X.sample	X.FusionName	JunctionReadCount	SpanningFragCount	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAF_left	FAF_right	J_FFPM	S_FFPM	annots	clnam	minFAF	maxFAF	sumFFPM	baseFilterPass	gtexcnt	tcgacnt	tcgaNormcnt	cclecnt	tcgaFcnt	pass	BroadID
T98G_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	59	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.746	0.1517	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.8977	TRUE	508	994	45	981	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	55	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6954	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.6954	TRUE	402	216	10	229	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	SETX--MED27	51	11	SETX	3360	chr9:135224639:-	MED27	45957	chr9:134769379:-	ONLY_REF_SPLICE	YES	16	69	0.79	0.47	0.6448	0.1391	SETX->chr9:135136743-135230372:-,senataxin,MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27	T98G_CENTRAL_NERVOUS_SYSTEM	0.47	0.79	0.7839	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	QKI--PACRG	47	20	QKI	2336	chr6:163836367:+	PACRG	44484	chr6:163735859:+	ONLY_REF_SPLICE	YES	80	1	0.46	0.99	0.5942	0.2529	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	T98G_CENTRAL_NERVOUS_SYSTEM	0.46	0.99	0.8471	TRUE	0	0	0	2	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	44	18	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	28	45	0.69	0.58	0.5563	0.2276	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	T98G_CENTRAL_NERVOUS_SYSTEM	0.58	0.69	0.7839	TRUE	181	1564	124	196	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	43	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	162	7	0.22	0.87	0.5437	0.0253	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	T98G_CENTRAL_NERVOUS_SYSTEM	0.22	0.87	0.569	TRUE	519	3926	326	965	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	GNAI1--KPNA7	39	12	GNAI1	2324	chr7:79764594:+	KPNA7	16497	chr7:98805112:-	INCL_NON_REF_SPLICE	YES	123	0	0.29	1	0.4931	0.1517	GNAI1->G_protein_subunit_alpha_i1,chr7:79763271-79848718:+,KPNA7->chr7:98771197-98805129:-,karyopherin_subunit_alpha_7	T98G_CENTRAL_NERVOUS_SYSTEM	0.29	1	0.6448	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	26	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.87	0.3287	0.0885	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	T98G_CENTRAL_NERVOUS_SYSTEM	0.87	1	0.4172	TRUE	458	1351	185	561	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	FAXC--COQ3	25	10	FAXC	4289	chr6:99781227:-	COQ3	28467	chr6:99819463:-	ONLY_REF_SPLICE	YES	14	27	0.71	0.56	0.3161	0.1264	LOCAL_REARRANGEMENT:-:[19338],FAXC->chr6:99719045-99797938:-,failed_axon_connections_homolog,COQ3->chr6:99817276-99842080:-,coenzyme_Q3,_methyltransferase	T98G_CENTRAL_NERVOUS_SYSTEM	0.56	0.71	0.4425	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	FRA10AC1--PRODH2	20	13	FRA10AC1	11253	chr10:95441237:-	PRODH2	26401	chr19:36298023:-	ONLY_REF_SPLICE	YES	20	0	0.62	1	0.2529	0.1644	FRA10AC1->chr10:95427640-95462329:-,fragile_site,_folic_acid_type,_rare,_fra(10)(q23.3)_or_fra(10)(q24.2)_candidate_1,PRODH2->chr19:36290890-36304201:-,proline_dehydrogenase_2	T98G_CENTRAL_NERVOUS_SYSTEM	0.62	1	0.4173	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	BAHD1--NRG4	20	11	BAHD1	2302	chr15:40733467:+	NRG4	21465	chr15:76303627:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2529	0.1391	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,NRG4->chr15:76228310-76352136:-,neuregulin_4	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.392	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	21	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2655	0.0126	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.2781	FALSE	462	80	0	856	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	QKI--PACRG	13	21	QKI	2336	chr6:163836367:+	PACRG	43367	chr6:163733811:+	ONLY_REF_SPLICE	YES	80	0	0.3	1	0.1644	0.2655	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	T98G_CENTRAL_NERVOUS_SYSTEM	0.3	1	0.4299	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	17	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2149	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.2149	FALSE	499	1288	110	792	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	16	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	42	1	0.31	0.2023	0.0379	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	T98G_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.2402	TRUE	465	1949	224	605	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	MIPEPP3--ABHD12	15	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1897	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.1897	TRUE	64	202	9	44	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	EDC3--CYP1A1	12	11	EDC3	7577	chr15:74967302:-	CYP1A1	20870	chr15:75015467:-	ONLY_REF_SPLICE	YES	49	2	0.32	0.92	0.1517	0.1391	LOCAL_REARRANGEMENT:-:[23250],EDC3->chr15:74922899-74988633:-,enhancer_of_mRNA_decapping_3,CYP1A1->Oncogene{Bushman},chr15:75011883-75017951:-,cytochrome_P450_family_1_subfamily_A_member_1	T98G_CENTRAL_NERVOUS_SYSTEM	0.32	0.92	0.2908	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	DOCK10--AC016717.1	12	9	DOCK10	1194	chr2:225906969:-	AC016717.1	61828	chr2:226563033:+	INCL_NON_REF_SPLICE	YES	56	0	0.27	1	0.1517	0.1138	DOCK10->chr2:225629807-225907162:-,dedicator_of_cytokinesis_10,AC016717.1->chr2:226562970-226563255:+	T98G_CENTRAL_NERVOUS_SYSTEM	0.27	1	0.2655	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	AC016831.7--CPA5	13	2	AC016831.7	4325	chr7:130600891:+	CPA5	14444	chr7:129999430:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1644	0.0253	AC016831.7->chr7:130538479-130613408:+,CPA5->carboxypeptidase_A5,chr7:129984630-130008571:+	T98G_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.1897	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	CTB-113P19.1--FTL	11	9	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1391	0.1138	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	T98G_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.2529	TRUE	0	2	0	13	2	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	10	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.92	1	0.1264	0.1644	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	T98G_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.2908	FALSE	515	4851	409	746	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	8	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.1011	0.1897	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T98G_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.2908	FALSE	499	1288	110	792	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	10	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	120	1	0.09	0.1264	0.0253	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	T98G_CENTRAL_NERVOUS_SYSTEM	0.09	1	0.1517	TRUE	347	1186	183	220	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	EDC3--CYP1A1	10	1	EDC3	7577	chr15:74967302:-	CYP1A1	21655	chr15:75014682:-	ONLY_REF_SPLICE	YES	49	8	0.18	0.58	0.1264	0.0126	LOCAL_REARRANGEMENT:-:[23250],EDC3->chr15:74922899-74988633:-,enhancer_of_mRNA_decapping_3,CYP1A1->Oncogene{Bushman},chr15:75011883-75017951:-,cytochrome_P450_family_1_subfamily_A_member_1	T98G_CENTRAL_NERVOUS_SYSTEM	0.18	0.58	0.139	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	7	13	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0885	0.1644	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.2529	FALSE	467	2173	244	435	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	EDC3--CYP1A1	7	11	EDC3	7577	chr15:74967302:-	CYP1A1	20873	chr15:75015464:-	ONLY_REF_SPLICE	YES	49	2	0.27	0.9	0.0885	0.1391	LOCAL_REARRANGEMENT:-:[23250],EDC3->chr15:74922899-74988633:-,enhancer_of_mRNA_decapping_3,CYP1A1->Oncogene{Bushman},chr15:75011883-75017951:-,cytochrome_P450_family_1_subfamily_A_member_1	T98G_CENTRAL_NERVOUS_SYSTEM	0.27	0.9	0.2276	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	LRRFIP1--RAB17	7	9	LRRFIP1	1165	chr2:238536383:+	RAB17	44051	chr2:238499617:-	ONLY_REF_SPLICE	YES	75	3	0.18	0.84	0.0885	0.1138	LOCAL_INVERSION:+:-:[25962],LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,RAB17->RAB17,_member_RAS_oncogene_family,chr2:238482965-238510257:-	T98G_CENTRAL_NERVOUS_SYSTEM	0.18	0.84	0.2023	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	BAHD1--NRG4	6	7	BAHD1	2302	chr15:40733467:+	NRG4	25780	chr15:76261565:-	ONLY_REF_SPLICE	YES	0	10	1	0.57	0.0759	0.0885	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,NRG4->chr15:76228310-76352136:-,neuregulin_4	T98G_CENTRAL_NERVOUS_SYSTEM	0.57	1	0.1644	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	CTB-113P19.1--FTL	4	12	CTB-113P19.1	4742	chr5:151066491:+	FTL	9972	chr19:49468589:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0506	0.1517	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	T98G_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.2023	TRUE	0	2	0	13	2	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	COL1A2--PTMA	6	2	COL1A2	14602	chr7:94041987:+	PTMA	37657	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	8485	4	0	0.67	0.0759	0.0253	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	T98G_CENTRAL_NERVOUS_SYSTEM	0	0.67	0.1012	TRUE	0	0	0	9	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	PFKL--MT-ND4L	6	2	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	867	0	0.01	1	0.0759	0.0253	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T98G_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.1012	FALSE	0	0	0	33	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	GALK2--SEMA6D	5	4	GALK2	10764	chr15:49509510:+	SEMA6D	36675	chr15:47893062:+	ONLY_REF_SPLICE	YES	32	0	0.22	1	0.0632	0.0506	GALK2->chr15:49447853-49660066:+,galactokinase_2,SEMA6D->chr15:47476298-48066420:+,semaphorin_6D	T98G_CENTRAL_NERVOUS_SYSTEM	0.22	1	0.1138	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	6	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0759	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0759	FALSE	499	1288	110	792	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	5	3	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	18	9	0.31	0.47	0.0632	0.0379	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	T98G_CENTRAL_NERVOUS_SYSTEM	0.31	0.47	0.1011	FALSE	59	21	0	114	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	5	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	32	8	0.2	0.5	0.0632	0.0379	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	T98G_CENTRAL_NERVOUS_SYSTEM	0.2	0.5	0.1011	FALSE	59	21	0	114	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	5	2	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	23	1	0.23	0.0632	0.0253	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	T98G_CENTRAL_NERVOUS_SYSTEM	0.23	1	0.0885	FALSE	141	264	50	91	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	5	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0632	0.0253	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0885	TRUE	477	1352	189	275	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	14	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.0253	0.177	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	T98G_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.2023	FALSE	407	2205	196	549	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	14	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	2	0	0.89	1	0.0253	0.177	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	T98G_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.2023	FALSE	275	511	55	178	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0.0632	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.1138	FALSE	499	1288	110	792	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	5	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0632	0.0126	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0758	TRUE	6	15	3	35	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	5	0	RP11-444D3.1	1258	chr12:24715267:-	SOX5	21326	chr12:23908658:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0632	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0632	TRUE	0	1	0	1	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	TTYH3--IGFBP5	5	0	TTYH3	14360	chr7:2701882:+	IGFBP5	26666	chr2:217539044:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,IGFBP5->Oncogene{Bushman},chr2:217536828-217560248:-,insulin_like_growth_factor_binding_protein_5	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	BAHD1--NRG4	2	11	BAHD1	2302	chr15:40733467:+	NRG4	19259	chr15:76328332:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0.1391	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,NRG4->chr15:76228310-76352136:-,neuregulin_4	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.1644	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	BAHD1--NRG4	4	3	BAHD1	2302	chr15:40733467:+	NRG4	26876	chr15:76254315:-	ONLY_REF_SPLICE	YES	0	11	1	0.39	0.0506	0.0379	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,NRG4->chr15:76228310-76352136:-,neuregulin_4	T98G_CENTRAL_NERVOUS_SYSTEM	0.39	1	0.0885	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	IGFBP4--NPM1	4	1	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	2468	0	0	1	0.0506	0.0126	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	T98G_CENTRAL_NERVOUS_SYSTEM	0	1	0.0632	FALSE	0	0	0	38	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	MOSPD2--REPS2	4	1	MOSPD2	1318	chrX:14891880:+	REPS2	33320	chrX:17080561:+	ONLY_REF_SPLICE	YES	56	2	0.08	0.71	0.0506	0.0126	GTEx_FI:{Whole_Blood=[count:4=pct:3.0],Blood=[count:2=pct:1.1]},GTEx_v2:{count=3;pct=0.03%;dist=Whole_Blood=3},{Klijn_CCL:Brain=1},MOSPD2->chrX:14891563-14940449:+,motile_sperm_domain_containing_2,REPS2->Oncogene{Bushman},RALBP1_associated_Eps_domain_containing_2,chrX:16964814-17171395:+	T98G_CENTRAL_NERVOUS_SYSTEM	0.08	0.71	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	4	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.45	1	0.0506	0.0126	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	T98G_CENTRAL_NERVOUS_SYSTEM	0.45	1	0.0632	FALSE	125	705	46	456	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	FRA10AC1--PRODH2	2	8	FRA10AC1	10133	chr10:95443813:-	PRODH2	26401	chr19:36298023:-	ONLY_REF_SPLICE	YES	30	0	0.25	1	0.0253	0.1011	FRA10AC1->chr10:95427640-95462329:-,fragile_site,_folic_acid_type,_rare,_fra(10)(q23.3)_or_fra(10)(q24.2)_candidate_1,PRODH2->chr19:36290890-36304201:-,proline_dehydrogenase_2	T98G_CENTRAL_NERVOUS_SYSTEM	0.25	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	4	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0506	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0506	TRUE	4	2	0	28	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	EDC3--CYP1A1	3	3	EDC3	7577	chr15:74967302:-	CYP1A1	21462	chr15:75014875:-	ONLY_REF_SPLICE	YES	49	6	0.11	0.5	0.0379	0.0379	LOCAL_REARRANGEMENT:-:[23250],EDC3->chr15:74922899-74988633:-,enhancer_of_mRNA_decapping_3,CYP1A1->Oncogene{Bushman},chr15:75011883-75017951:-,cytochrome_P450_family_1_subfamily_A_member_1	T98G_CENTRAL_NERVOUS_SYSTEM	0.11	0.5	0.0758	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	13	8	0.32	0.43	0.0379	0.0379	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	T98G_CENTRAL_NERVOUS_SYSTEM	0.32	0.43	0.0758	FALSE	59	21	0	114	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	3	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.31	1	0.0379	0.0253	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	T98G_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.0632	FALSE	164	806	69	479	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	0	MT-ND6	1026	chrM:14648:-	MT-TE	4541	chrM:14727:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	FALSE	499	1288	110	792	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RNF152--RP11-879F14.1	3	0	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0379	0	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	FALSE	275	472	65	43	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	1	6	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	29	45	0.19	0.13	0.0126	0.0759	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	T98G_CENTRAL_NERVOUS_SYSTEM	0.13	0.19	0.0885	TRUE	105	90	7	93	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	PDHX--CD44	2	2	PDHX	1987	chr11:34938362:+	CD44	37425	chr11:35236399:+	ONLY_REF_SPLICE	YES	133	2226	0.03	0	0.0253	0.0253	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	T98G_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0506	FALSE	0	1	0	9	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	EDC3--CYP1A1	2	1	EDC3	1413	chr15:74988221:-	CYP1A1	20870	chr15:75015467:-	ONLY_REF_SPLICE	NO	57	2	0.05	0.6	0.0253	0.0126	LOCAL_REARRANGEMENT:-:[23250],EDC3->chr15:74922899-74988633:-,enhancer_of_mRNA_decapping_3,CYP1A1->Oncogene{Bushman},chr15:75011883-75017951:-,cytochrome_P450_family_1_subfamily_A_member_1	T98G_CENTRAL_NERVOUS_SYSTEM	0.05	0.6	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	MTERF--SGCE	2	1	MTERF	1666	chr7:91509369:-	SGCE	21834	chr7:94232764:-	ONLY_REF_SPLICE	YES	17	422	0.15	0.01	0.0253	0.0126	MTERF->chr7:91321323-91510034:-,SGCE->chr7:94214542-94285521:-,sarcoglycan_epsilon	T98G_CENTRAL_NERVOUS_SYSTEM	0.01	0.15	0.0379	FALSE	0	0	0	1	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	2	0	CD44	1501	chr11:35160917:+	PDHX	40918	chr11:35006117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	2	0	7	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	GNAI1--KPNA7	2	0	GNAI1	2324	chr7:79764594:+	KPNA7	20818	chr7:98790724:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GNAI1->G_protein_subunit_alpha_i1,chr7:79763271-79848718:+,KPNA7->chr7:98771197-98805129:-,karyopherin_subunit_alpha_7	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	FALSE	292	1546	117	613	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	FALSE	7	44	2	41	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	PDGFD--DYNC2H1	2	0	PDGFD	1576	chr11:104034532:-	DYNC2H1	100944	chr11:103270391:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},PDGFD->chr11:103777914-104035107:-,platelet_derived_growth_factor_D,DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	1253	chr12:24715272:-	SOX5	21326	chr12:23908658:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	1	0	1	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RSRC2--CNOT2	2	0	RSRC2	1153	chr12:123011395:-	CNOT2	30925	chr12:70704675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	RSRC2->arginine/serine-rich_coiled-coil_2,chr12:122989190-123011547:-,CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	GALK2--SEMA6D	1	3	GALK2	10764	chr15:49509510:+	SEMA6D	41689	chr15:48051942:+	ONLY_REF_SPLICE	YES	32	5	0.11	0.44	0.0126	0.0379	GALK2->chr15:49447853-49660066:+,galactokinase_2,SEMA6D->chr15:47476298-48066420:+,semaphorin_6D	T98G_CENTRAL_NERVOUS_SYSTEM	0.11	0.44	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	PTPRK--ECHDC1	1	2	PTPRK	16110	chr6:128540067:-	ECHDC1	57086	chr6:127652175:-	ONLY_REF_SPLICE	YES	138	65	0.02	0.04	0.0126	0.0253	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,ECHDC1->chr6:127609855-127664754:-,ethylmalonyl-CoA_decarboxylase_1	T98G_CENTRAL_NERVOUS_SYSTEM	0.02	0.04	0.0379	TRUE	0	0	0	1	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	1	2	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	23	0.75	0.12	0.0126	0.0253	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	T98G_CENTRAL_NERVOUS_SYSTEM	0.12	0.75	0.0379	FALSE	49	120	16	70	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0126	0.0253	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	TRUE	274	363	69	150	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0126	0.0253	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	T98G_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	TRUE	160	277	29	98	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	AC072062.1--AC007405.4	1	1	AC072062.1	2321	chr2:215698829:+	AC007405.4	15576	chr2:171584298:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0126	0.0126	AC072062.1->chr2:215674953-215827998:+,AC007405.4->chr2:171579719-171627276:-	T98G_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	BAHD1--NRG4	1	1	BAHD1	2302	chr15:40733467:+	NRG4	28023	chr15:76251481:-	ONLY_REF_SPLICE	YES	0	17	1	0.11	0.0126	0.0126	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,NRG4->chr15:76228310-76352136:-,neuregulin_4	T98G_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	COL6A3--FUS	1	1	COL6A3	46833	chr2:238242093:-	FUS	64539	chr16:31199646:+	ONLY_REF_SPLICE	YES	3081	683	0	0	0.0126	0.0126	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	T98G_CENTRAL_NERVOUS_SYSTEM	0	0	0.0252	FALSE	0	1	0	1	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	DLD--COG5	1	1	DLD	2723	chr7:107533723:+	COG5	24286	chr7:107188777:-	ONLY_REF_SPLICE	YES	284	40	0.01	0.05	0.0126	0.0126	DLD->chr7:107531415-107572175:+,dihydrolipoamide_dehydrogenase,COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5	T98G_CENTRAL_NERVOUS_SYSTEM	0.01	0.05	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	MTERF--SGCE	1	1	MTERF	8669	chr7:91456729:-	SGCE	21834	chr7:94232764:-	ONLY_REF_SPLICE	YES	1	422	0.67	0	0.0126	0.0126	MTERF->chr7:91321323-91510034:-,SGCE->chr7:94214542-94285521:-,sarcoglycan_epsilon	T98G_CENTRAL_NERVOUS_SYSTEM	0	0.67	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	MTERF--SGCE	1	1	MTERF	2767	chr7:91506192:-	SGCE	21834	chr7:94232764:-	ONLY_REF_SPLICE	YES	27	422	0.07	0	0.0126	0.0126	MTERF->chr7:91321323-91510034:-,SGCE->chr7:94214542-94285521:-,sarcoglycan_epsilon	T98G_CENTRAL_NERVOUS_SYSTEM	0	0.07	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	MTERF--SGCE	1	1	MTERF	10890	chr7:91321323:-	SGCE	21834	chr7:94232764:-	ONLY_REF_SPLICE	NO	0	422	1	0	0.0126	0.0126	MTERF->chr7:91321323-91510034:-,SGCE->chr7:94214542-94285521:-,sarcoglycan_epsilon	T98G_CENTRAL_NERVOUS_SYSTEM	0	1	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	MTERF--SGCE	1	1	MTERF	9731	chr7:91322713:-	SGCE	21834	chr7:94232764:-	ONLY_REF_SPLICE	NO	0	422	1	0	0.0126	0.0126	MTERF->chr7:91321323-91510034:-,SGCE->chr7:94214542-94285521:-,sarcoglycan_epsilon	T98G_CENTRAL_NERVOUS_SYSTEM	0	1	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	RPA1--SLC43A2	1	1	RPA1	5340	chr17:1756483:+	SLC43A2	40400	chr17:1481617:-	ONLY_REF_SPLICE	NO	259	23	0.01	0.08	0.0126	0.0126	RPA1->chr17:1732996-1803376:+,replication_protein_A1,SLC43A2->chr17:1472561-1532180:-,solute_carrier_family_43_member_2	T98G_CENTRAL_NERVOUS_SYSTEM	0.01	0.08	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000571
T98G_CENTRAL_NERVOUS_SYSTEM	TXNRD1--NFYB	1	1	TXNRD1	11664	chr12:104682818:+	NFYB	36515	chr12:104529310:-	ONLY_REF_SPLICE	YES	1922	38	0	0.05	0.0126	0.0126	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:+:-:[77490],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	T98G_CENTRAL_NERVOUS_SYSTEM	0	0.05	0.0252	FALSE	0	0	0	6	0	FALSE	ACH-000571
CL34_LARGE_INTESTINE	MT-ATP6--MT-CO2	846	4	MT-ATP6	1408	chrM:8934:+	MT-CO2	5049	chrM:7953:+	INCL_NON_REF_SPLICE	YES	95	11	0.9	0.99	7.2161	0.0341	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CL34_LARGE_INTESTINE	0.9	0.99	7.2502	FALSE	59	21	0	114	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TN	154	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3136	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL34_LARGE_INTESTINE	1	1	1.3136	FALSE	369	2501	205	193	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	TIMM23B--LINC00843	83	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.708	0.1706	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CL34_LARGE_INTESTINE	0.99	1	0.8786	TRUE	508	994	45	981	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	19	216	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	10	1	0.96	1	0.1621	1.8424	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.96	1	2.0045	FALSE	344	826	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TC	65	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5544	0.0682	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CL34_LARGE_INTESTINE	1	1	0.6226	FALSE	462	80	0	856	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	ZNF654--HMGB2	61	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5203	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CL34_LARGE_INTESTINE	1	1	0.5203	TRUE	0	0	0	518	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	219	MT-ND4	1285	chrM:11044:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	26	1	0.9	1	0.0341	1.868	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.9	1	1.9021	FALSE	344	827	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	217	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	12	0	0.95	1	0.0341	1.8509	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.95	1	1.885	FALSE	344	826	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	210	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	8	1	0.96	1	0.0426	1.7912	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.96	1	1.8338	FALSE	344	826	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	49	28	MT-ND4	1214	chrM:10973:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	13	0	0.86	1	0.418	0.2388	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.86	1	0.6568	FALSE	344	826	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	8	160	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	1	0.98	0.99	0.0682	1.3647	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.98	0.99	1.4329	FALSE	344	821	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	TIMM23--RP11-464F9.1	46	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	187	3	0.21	0.94	0.3924	0.0341	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CL34_LARGE_INTESTINE	0.21	0.94	0.4265	TRUE	519	3926	326	965	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	39	28	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	13	0	0.84	1	0.3327	0.2388	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.84	1	0.5715	FALSE	344	826	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	157	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	6	0	0.96	1	0.0512	1.3392	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.96	1	1.3904	FALSE	344	826	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	151	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	14	0	0.92	1	0.0512	1.288	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.92	1	1.3392	FALSE	344	826	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	149	MT-ND4	1164	chrM:10923:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	NO	10	0	0.94	1	0.0341	1.2709	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.94	1	1.305	FALSE	344	826	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TN	16	96	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1365	0.8188	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL34_LARGE_INTESTINE	1	1	0.9553	FALSE	369	2501	205	193	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	NPM1P24--SET	36	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3071	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CL34_LARGE_INTESTINE	1	1	0.3071	TRUE	0	0	0	434	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TN	24	34	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2047	0.29	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL34_LARGE_INTESTINE	1	1	0.4947	FALSE	369	2501	205	193	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	17	57	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	11	16	0.87	0.82	0.145	0.4862	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.82	0.87	0.6312	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TN	16	61	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1365	0.5203	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL34_LARGE_INTESTINE	1	1	0.6568	FALSE	369	2501	205	193	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	88	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12	0	0.89	1	0.0426	0.7506	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.89	1	0.7932	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TN	18	31	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1535	0.2644	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL34_LARGE_INTESTINE	1	1	0.4179	FALSE	369	2501	205	193	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	7	73	MT-CO3	1138	chrM:9344:+	MT-ATP6	4905	chrM:8647:+	INCL_NON_REF_SPLICE	YES	11	17	0.88	0.82	0.0597	0.6227	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.82	0.88	0.6824	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ATP8--MT-CO1	25	0	MT-ATP8	1179	chrM:8544:+	MT-CO1	5382	chrM:7078:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2132	0	LOCAL_REARRANGEMENT:+:[921],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CL34_LARGE_INTESTINE	1	1	0.2132	FALSE	3	1	0	9	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TN	14	44	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1194	0.3753	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL34_LARGE_INTESTINE	1	1	0.4947	FALSE	369	2501	205	193	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	10	54	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	3	28	0.96	0.7	0.0853	0.4606	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.7	0.96	0.5459	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND6--MT-TE	23	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1962	0.0171	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL34_LARGE_INTESTINE	1	1	0.2133	FALSE	499	1288	110	792	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	80	MT-CO3	1234	chrM:9440:+	MT-ATP6	4943	chrM:8685:+	INCL_NON_REF_SPLICE	YES	14	35	0.86	0.7	0.0256	0.6824	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.7	0.86	0.708	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	11	45	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	10464	0	0.01	1	0.0938	0.3838	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.01	1	0.4776	FALSE	328	800	43	304	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ATP6--MT-CO2	21	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	110	51	0.19	0.33	0.1791	0.0341	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CL34_LARGE_INTESTINE	0.19	0.33	0.2132	FALSE	59	21	0	114	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	74	MT-CO3	1136	chrM:9342:+	MT-ATP6	4831	chrM:8573:+	INCL_NON_REF_SPLICE	YES	11	0	0.88	1	0.0256	0.6312	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.88	1	0.6568	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	6	60	MT-CO3	1637	chrM:9843:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	NO	3	8	0.96	0.89	0.0512	0.5118	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.89	0.96	0.563	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TN	21	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1791	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL34_LARGE_INTESTINE	1	1	0.1791	FALSE	369	2501	205	193	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	7	55	MT-CO3	1090	chrM:9296:+	MT-ATP6	5120	chrM:8862:+	INCL_NON_REF_SPLICE	YES	4	27	0.94	0.7	0.0597	0.4691	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.7	0.94	0.5288	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	TRA2A--DNAH11	18	11	TRA2A	3587	chr7:23561326:-	DNAH11	81469	chr7:21882162:+	ONLY_REF_SPLICE	YES	236	0	0.11	1	0.1535	0.0938	{Klijn_CCL:Colo-Rectal=1},TRA2A->chr7:23544399-23571660:-,transformer_2_alpha_homolog,DNAH11->chr7:21582833-21941457:+,dynein_axonemal_heavy_chain_11	CL34_LARGE_INTESTINE	0.11	1	0.2473	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	KIAA1549--RP11-61L23.2	19	4	KIAA1549	14118	chr7:138579088:-	RP11-61L23.2	38881	chr7:143510872:-	ONLY_REF_SPLICE	YES	7	4	0.77	0.85	0.1621	0.0341	KIAA1549->KIAA1549,Oncogene{Bushman},chr7:138516126-138666064:-,RP11-61L23.2->chr7:143339348-143534026:-	CL34_LARGE_INTESTINE	0.77	0.85	0.1962	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TC	18	8	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1535	0.0682	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CL34_LARGE_INTESTINE	1	1	0.2217	FALSE	462	80	0	856	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	9	42	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	10	0	0.84	1	0.0768	0.3582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.84	1	0.435	FALSE	344	826	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	54	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	6	8	0.91	0.88	0.0426	0.4606	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.88	0.91	0.5032	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	58	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0.4947	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	1	1	0.5288	FALSE	344	821	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	57	MT-CO3	1155	chrM:9361:+	MT-ATP6	5330	chrM:9072:+	INCL_NON_REF_SPLICE	YES	17	10	0.78	0.86	0.0341	0.4862	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.78	0.86	0.5203	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	61	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0.5203	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	1	1	0.5459	FALSE	344	821	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND6--MT-TE	17	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.145	0.0341	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL34_LARGE_INTESTINE	1	1	0.1791	FALSE	499	1288	110	792	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TN	18	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1535	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL34_LARGE_INTESTINE	1	1	0.1535	FALSE	369	2501	205	193	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	54	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	3	16	0.95	0.78	0.0341	0.4606	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.78	0.95	0.4947	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	58	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	20	12	0.75	0.84	0.0256	0.4947	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.75	0.84	0.5203	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	57	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	12	16	0.83	0.79	0.0256	0.4862	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.79	0.83	0.5118	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	57	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	11	93	0.85	0.39	0.0256	0.4862	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.39	0.85	0.5118	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	10	28	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	5961	0	0.01	1	0.0853	0.2388	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.01	1	0.3241	FALSE	344	827	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	55	MT-CO3	1075	chrM:9281:+	MT-ATP6	5166	chrM:8908:+	INCL_NON_REF_SPLICE	NO	3	81	0.95	0.42	0.0256	0.4691	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.42	0.95	0.4947	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	9	28	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	405	0	0.08	1	0.0768	0.2388	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.08	1	0.3156	FALSE	344	827	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	44	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	20	0	0.71	1	0.0426	0.3753	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.71	1	0.4179	FALSE	344	827	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	45	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	342	0	0.13	1	0.0341	0.3838	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.13	1	0.4179	FALSE	344	827	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TN	4	44	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0.3753	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL34_LARGE_INTESTINE	1	1	0.4094	FALSE	369	2501	205	193	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	NPM1P24--SET	15	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1279	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CL34_LARGE_INTESTINE	1	1	0.1279	TRUE	0	0	0	434	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	36	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.0426	0.3071	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.93	1	0.3497	FALSE	344	821	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	SAMD5--SASH1	14	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1194	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	CL34_LARGE_INTESTINE	1	1	0.1194	TRUE	53	396	64	110	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	43	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	4	3	0.92	0.94	0.0256	0.3668	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.92	0.94	0.3924	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	27	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	10	0	0.77	1	0.0597	0.2303	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.77	1	0.29	FALSE	344	826	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	27	MT-ND4	1114	chrM:10873:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6	0	0.85	1	0.0597	0.2303	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.85	1	0.29	FALSE	344	826	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	42	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	10	0	0.82	1	0.0256	0.3582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.82	1	0.3838	FALSE	344	826	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	9	16	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	27	0	0.48	1	0.0768	0.1365	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.48	1	0.2133	FALSE	344	827	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ATP6--MT-CO2	12	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	110	64	0.12	0.19	0.1024	0.0256	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CL34_LARGE_INTESTINE	0.12	0.19	0.128	FALSE	59	21	0	114	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TN	3	37	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0256	0.3156	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL34_LARGE_INTESTINE	1	1	0.3412	FALSE	369	2501	205	193	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	28	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	26	0	0.56	1	0.0426	0.2388	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.56	1	0.2814	FALSE	344	827	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	28	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	3834	0	0.01	1	0.0426	0.2388	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.01	1	0.2814	FALSE	344	827	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TN	12	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1024	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL34_LARGE_INTESTINE	1	1	0.1024	FALSE	369	2501	205	193	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	27	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10	0	0.76	1	0.0426	0.2303	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.76	1	0.2729	FALSE	344	826	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	NRIP1--AF127936.7	11	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.82	1	0.0938	0.0256	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CL34_LARGE_INTESTINE	0.82	1	0.1194	FALSE	292	1546	117	613	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	28	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	14	0	0.7	1	0.0341	0.2388	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.7	1	0.2729	FALSE	344	826	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	16	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	12	0	0.65	1	0.0512	0.1365	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.65	1	0.1877	FALSE	344	826	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TN	10	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0853	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL34_LARGE_INTESTINE	1	1	0.0853	FALSE	369	2501	205	193	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	RP11-120D5.1--MID1	10	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0853	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CL34_LARGE_INTESTINE	1	1	0.0853	FALSE	16	356	14	466	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	RP11-680G10.1--GSE1	10	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0853	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CL34_LARGE_INTESTINE	1	1	0.0853	TRUE	465	1949	224	605	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ATP6	5	18	MT-ND4	1773	chrM:11532:+	MT-ATP6	5320	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11927	0	0	1	0.0426	0.1535	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0	1	0.1961	FALSE	21	137	19	8	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	17	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	11	1	0.67	0.96	0.0426	0.145	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.67	0.96	0.1876	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	24	MT-CO3	1020	chrM:9226:+	MT-ATP6	5206	chrM:8948:+	INCL_NON_REF_SPLICE	YES	0	96	1	0.22	0.0256	0.2047	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.22	1	0.2303	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	24	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.87	0.0256	0.2047	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.87	1	0.2303	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ATP6--MT-CO2	8	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	102	49	0.1	0.18	0.0682	0.0256	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CL34_LARGE_INTESTINE	0.1	0.18	0.0938	FALSE	59	21	0	114	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	8	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0682	0.0256	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CL34_LARGE_INTESTINE	1	1	0.0938	FALSE	81	155	12	160	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	CCDC136--POLR2J2	8	2	CCDC136	16658	chr7:128455985:+	POLR2J2	25785	chr7:102306610:-	ONLY_REF_SPLICE	YES	0	120	1	0.08	0.0682	0.0171	CCDC136->chr7:128430811-128462186:+,coiled-coil_domain_containing_136,POLR2J2->chr7:102277474-102312076:-,chr7:102277496-102312088:-,polymerase_(RNA)_II_subunit_J2	CL34_LARGE_INTESTINE	0.08	1	0.0853	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ATP6	8	2	MT-ND4	1477	chrM:11236:+	MT-ATP6	5883	chrM:9031:+	INCL_NON_REF_SPLICE	NO	13201	6678	0	0	0.0682	0.0171	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0	0	0.0853	FALSE	21	137	19	8	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	8	1	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	11	0	0.45	1	0.0682	0.0085	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.45	1	0.0767	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	8	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	13	0	0.41	1	0.0682	0.0085	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.41	1	0.0767	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	5	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.92	0.0597	0.0426	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.92	1	0.1023	FALSE	344	821	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	16	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	5	0	0.8	1	0.0341	0.1365	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.8	1	0.1706	FALSE	344	826	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TC	5	12	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0.1024	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CL34_LARGE_INTESTINE	1	1	0.145	FALSE	462	80	0	856	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	14	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	6	1	0.75	0.95	0.0341	0.1194	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.75	0.95	0.1535	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	TPPP--BRD9	7	2	TPPP	1118	chr5:693393:-	BRD9	23088	chr5:880004:-	ONLY_REF_SPLICE	YES	2	49	0.82	0.16	0.0597	0.0171	GTEx_FI:{Colon=[count:8=pct:4.2],Blood_Vessel=[count:8=pct:2.2],Esophagus=[count:8=pct:2.0],Brain=[count:3=pct:0.5],Lung=[count:3=pct:1.8],Uterus=[count:2=pct:4.7],Adipose_Tissue=[count:2=pct:0.7],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Muscle=[count:1=pct:0.4],Skin=[count:1=pct:0.3],Thyroid=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Adipose_-_Subcutaneous=1},TPPP->chr5:660883-693510:-,tubulin_polymerization_promoting_protein,BRD9->bromodomain_containing_9,chr5:850406-892939:-	CL34_LARGE_INTESTINE	0.16	0.82	0.0768	TRUE	29	26	4	4	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ATP6--MT-CO2	6	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	110	38	0.09	0.22	0.0512	0.0426	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CL34_LARGE_INTESTINE	0.09	0.22	0.0938	FALSE	59	21	0	114	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND6--MT-TE	4	12	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0.1024	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL34_LARGE_INTESTINE	1	1	0.1365	FALSE	499	1288	110	792	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	HSP90AB1--MT-RNR2	6	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1882	0	0	1	0.0512	0.0171	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CL34_LARGE_INTESTINE	0	1	0.0683	FALSE	13	9	0	364	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO1--MT-ND1	6	2	MT-CO1	1324	chrM:6227:+	MT-ND1	5558	chrM:3322:+	INCL_NON_REF_SPLICE	NO	4949	0	0	1	0.0512	0.0171	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CL34_LARGE_INTESTINE	0	1	0.0683	FALSE	39	29	6	19	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0512	0.0085	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CL34_LARGE_INTESTINE	1	1	0.0597	FALSE	462	80	0	856	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	FAM84A--MT-CO3	6	0	FAM84A	2502	chr2:14774311:+	MT-CO3	16532	chrM:9412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0512	0	FAM84A->chr2:14772810-14790933:+,family_with_sequence_similarity_84_member_A,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CL34_LARGE_INTESTINE	1	1	0.0512	FALSE	0	0	0	3	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	REV3L--RPL28	6	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0512	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CL34_LARGE_INTESTINE	1	1	0.0512	TRUE	22	156	2	142	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	HSP90AB1--MT-RNR2	5	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1858	0	0	1	0.0426	0.0171	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CL34_LARGE_INTESTINE	0	1	0.0597	FALSE	13	9	0	364	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	PHF14--AMPH	5	2	PHF14	2074	chr7:11014572:+	AMPH	31127	chr7:38574611:-	ONLY_REF_SPLICE	YES	56	0	0.11	1	0.0426	0.0171	PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+,AMPH->amphiphysin,chr7:38423305-38671167:-	CL34_LARGE_INTESTINE	0.11	1	0.0597	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	MT-ATP6--MT-CO2	4	5	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	110	43	0.08	0.17	0.0341	0.0426	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CL34_LARGE_INTESTINE	0.08	0.17	0.0767	FALSE	59	21	0	114	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	1	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0426	0.0085	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.75	1	0.0511	FALSE	344	821	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO1--MT-ND1	5	0	MT-CO1	1653	chrM:6556:+	MT-ND1	6262	chrM:4026:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CL34_LARGE_INTESTINE	1	1	0.0426	FALSE	39	30	6	19	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO1--MT-ND1	4	4	MT-CO1	1577	chrM:6480:+	MT-ND1	5559	chrM:3323:+	INCL_NON_REF_SPLICE	YES	16625	0	0	1	0.0341	0.0341	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CL34_LARGE_INTESTINE	0	1	0.0682	FALSE	39	30	6	19	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	8	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	6	1	0.65	0.92	0.0256	0.0682	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.65	0.92	0.0938	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	1	1	0.0426	FALSE	344	821	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TN	5	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL34_LARGE_INTESTINE	1	1	0.0426	FALSE	369	2501	205	193	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TN	5	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL34_LARGE_INTESTINE	1	1	0.0426	FALSE	369	2501	205	193	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	PRKAR1B--DGKB	5	0	PRKAR1B	6154	chr7:750966:-	DGKB	49337	chr7:14385016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0426	0	PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta,DGKB->chr7:14184674-15014402:-,diacylglycerol_kinase_beta	CL34_LARGE_INTESTINE	1	1	0.0426	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	MT-TA--MT-TN	4	3	MT-TA	1033	chrM:5623:-	MT-TN	4092	chrM:5707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0.0256	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL34_LARGE_INTESTINE	1	1	0.0597	FALSE	369	2501	205	193	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ATP6	4	2	MT-ND4	1452	chrM:11211:+	MT-ATP6	5779	chrM:8927:+	INCL_NON_REF_SPLICE	YES	13507	8209	0	0	0.0341	0.0171	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0	0	0.0512	FALSE	21	137	19	8	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0341	0.0171	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CL34_LARGE_INTESTINE	0.86	0.86	0.0512	FALSE	515	4851	409	746	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO1--MT-ND1	3	5	MT-CO1	1653	chrM:6556:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	NO	19457	4543	0	0	0.0256	0.0426	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CL34_LARGE_INTESTINE	0	0	0.0682	FALSE	39	30	6	19	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	5	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	17	1	0.32	0.0256	0.0426	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0.32	1	0.0682	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	FTH1--ACTB	4	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	CL34_LARGE_INTESTINE	1	1	0.0341	TRUE	1	0	0	97	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	IGF2BP3--AC017060.1	4	0	IGF2BP3	5880	chr7:23458395:-	AC017060.1	32738	chr7:17523158:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	IGF2BP3->chr7:23349828-23510086:-,insulin_like_growth_factor_2_mRNA_binding_protein_3,AC017060.1->chr7:17503069-17598533:-	CL34_LARGE_INTESTINE	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ATP6	3	4	MT-ND4	1258	chrM:11017:+	MT-ATP6	5371	chrM:8519:+	INCL_NON_REF_SPLICE	YES	10714	0	0	1	0.0256	0.0341	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0	1	0.0597	FALSE	21	93	18	8	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ATP6	3	4	MT-ND4	1787	chrM:11546:+	MT-ATP6	5797	chrM:8945:+	INCL_NON_REF_SPLICE	YES	11781	7740	0	0	0.0256	0.0341	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0	0	0.0597	FALSE	21	137	19	8	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	NRIP1--AF127936.7	2	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.36	1	0.0171	0.0682	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CL34_LARGE_INTESTINE	0.36	1	0.0853	FALSE	164	806	69	479	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	3	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	69	49	0.08	0.11	0.0256	0.0256	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CL34_LARGE_INTESTINE	0.08	0.11	0.0512	FALSE	59	21	0	114	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ATP6	3	3	MT-ND4	1773	chrM:11532:+	MT-ATP6	5779	chrM:8927:+	INCL_NON_REF_SPLICE	YES	11927	8209	0	0	0.0256	0.0256	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0	0	0.0512	FALSE	21	137	19	8	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ATP6	3	3	MT-ND4	1213	chrM:10972:+	MT-ATP6	5324	chrM:8472:+	INCL_NON_REF_SPLICE	NO	10393	0	0	1	0.0256	0.0256	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0	1	0.0512	FALSE	21	91	18	8	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	53	41	0.09	0.11	0.0256	0.0171	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CL34_LARGE_INTESTINE	0.09	0.11	0.0427	FALSE	59	21	0	114	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ATP6	3	2	MT-ND4	1426	chrM:11185:+	MT-ATP6	5856	chrM:9004:+	INCL_NON_REF_SPLICE	NO	13260	6971	0	0	0.0256	0.0171	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0	0	0.0427	FALSE	21	137	19	8	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ATP6	3	2	MT-ND4	1436	chrM:11195:+	MT-ATP6	5773	chrM:8921:+	INCL_NON_REF_SPLICE	YES	13580	8566	0	0	0.0256	0.0171	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0	0	0.0427	FALSE	21	137	19	8	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ATP6	3	2	MT-ND4	1209	chrM:10968:+	MT-ATP6	5317	chrM:8465:+	INCL_NON_REF_SPLICE	NO	10430	0	0	1	0.0256	0.0171	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0	1	0.0427	FALSE	21	91	18	8	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ATP8--MT-CO1	3	1	MT-ATP8	1269	chrM:8634:+	MT-CO1	4850	chrM:6546:+	INCL_NON_REF_SPLICE	NO	0	19153	1	0	0.0256	0.0085	LOCAL_REARRANGEMENT:+:[921],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CL34_LARGE_INTESTINE	0	1	0.0341	FALSE	3	1	0	9	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ATP6	3	1	MT-ND4	1998	chrM:11757:+	MT-ATP6	5927	chrM:9075:+	INCL_NON_REF_SPLICE	NO	12328	5523	0	0	0.0256	0.0085	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	0	0	0.0341	FALSE	21	137	19	8	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	3	0	0.57	1	0.0256	0.0085	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	0.57	1	0.0341	FALSE	344	821	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	1	MT-ND4	1033	chrM:10792:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0256	0.0085	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL34_LARGE_INTESTINE	1	1	0.0341	FALSE	344	821	44	306	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	NRIP1--AF127936.7	2	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.28	1	0.0171	0.0426	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CL34_LARGE_INTESTINE	0.28	1	0.0597	FALSE	125	705	46	456	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	FTH1--ACTB	3	0	FTH1	1181	chr11:61734952:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	CL34_LARGE_INTESTINE	1	1	0.0256	TRUE	1	0	0	97	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	FTH1--ACTB	3	0	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	CL34_LARGE_INTESTINE	1	1	0.0256	TRUE	1	0	0	97	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL34_LARGE_INTESTINE	1	1	0.0256	FALSE	189	492	56	216	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0171	0.0171	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CL34_LARGE_INTESTINE	0.8	1	0.0342	FALSE	407	2205	196	549	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MACC1--VWC2	2	1	MACC1	4410	chr7:20210337:-	VWC2	26281	chr7:49951630:+	ONLY_REF_SPLICE	NO	40	0	0.07	1	0.0171	0.0085	MACC1->chr7:20174278-20257027:-,metastasis_associated_in_colon_cancer_1,VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2	CL34_LARGE_INTESTINE	0.07	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	FAM120B--PSMB1	2	0	FAM120B	3590	chr6:170615930:+	PSMB1	23731	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	CL34_LARGE_INTESTINE	1	1	0.0171	TRUE	0	2	0	5	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CL34_LARGE_INTESTINE	1	1	0.0171	TRUE	458	1351	185	561	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	SPATA6--AGBL4	2	0	SPATA6	6677	chr1:48877136:-	AGBL4	36830	chr1:49128913:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	LOCAL_REARRANGEMENT:-:[60682],SPATA6->chr1:48761044-48937845:-,spermatogenesis_associated_6,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	CL34_LARGE_INTESTINE	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	YWHAE--CRK	2	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	CL34_LARGE_INTESTINE	1	1	0.0171	TRUE	6	50	7	115	0	FALSE	ACH-000895
CL34_LARGE_INTESTINE	MRPS17--ANKMY2	1	2	MRPS17	6177	chr7:55991392:+	ANKMY2	17526	chr7:16666803:-	ONLY_REF_SPLICE	NO	0	57	1	0.05	0.0085	0.0171	MRPS17->chr7:55954970-56022932:+,chr7:56019512-56024192:+,mitochondrial_ribosomal_protein_S17,ANKMY2->ankyrin_repeat_and_MYND_domain_containing_2,chr7:16639401-16685442:-	CL34_LARGE_INTESTINE	0.05	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	MACC1--VWC2	1	1	MACC1	3342	chr7:20224612:-	VWC2	26281	chr7:49951630:+	ONLY_REF_SPLICE	YES	23	0	0.08	1	0.0085	0.0085	MACC1->chr7:20174278-20257027:-,metastasis_associated_in_colon_cancer_1,VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2	CL34_LARGE_INTESTINE	0.08	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000895
CL34_LARGE_INTESTINE	SMN2--SUGP2	1	1	SMN2	2320	chr5:69359313:+	SUGP2	32698	chr19:19101958:-	ONLY_REF_SPLICE	YES	362	46	0.01	0.04	0.0085	0.0085	SMN2->chr5:69345350-69374349:+,survival_of_motor_neuron_2,_centromeric,SUGP2->SURP_and_G-patch_domain_containing_2,chr19:19101697-19144832:-	CL34_LARGE_INTESTINE	0.01	0.04	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000895
NCIH209_LUNG	SH3BP4--AC093838.4	382	72	SH3BP4	1198	chr2:235860814:+	AC093838.4	34361	chr2:132277670:+	ONLY_REF_SPLICE	YES	32	103	0.93	0.82	3.9465	0.7438	SH3BP4->SH3_domain_binding_protein_4,chr2:235860617-235964358:+,AC093838.4->chr2:132250386-132279146:+	NCIH209_LUNG	0.82	0.93	4.6903	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	TIMM23B--LINC00843	133	53	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.374	0.5475	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH209_LUNG	1	1	1.9215	TRUE	508	994	45	981	0	FALSE	ACH-000290
NCIH209_LUNG	RP11-123O10.4--GRIP1	117	37	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.99	1.2087	0.3823	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH209_LUNG	0.99	1	1.591	FALSE	416	2512	207	587	0	FALSE	ACH-000290
NCIH209_LUNG	CREBBP--SLX4	96	100	CREBBP	3608	chr16:3900298:-	SLX4	52201	chr16:3646394:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.9918	1.0331	{Klijn_CCL:Lung=1},CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,SLX4->SLX4_structure-specific_endonuclease_subunit,chr16:3631182-3661599:-	NCIH209_LUNG	1	1	2.0249	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	TIMM23--RP11-464F9.1	77	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	315	10	0.2	0.89	0.7955	0.0413	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH209_LUNG	0.2	0.89	0.8368	TRUE	519	3926	326	965	0	FALSE	ACH-000290
NCIH209_LUNG	MSI2--TRIM37	53	21	MSI2	5660	chr17:55339553:+	TRIM37	58745	chr17:57153075:-	ONLY_REF_SPLICE	YES	251	65	0.23	0.53	0.5475	0.217	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37	NCIH209_LUNG	0.23	0.53	0.7645	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	ZNF654--HMGB2	58	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5992	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH209_LUNG	1	1	0.5992	TRUE	0	0	0	518	0	FALSE	ACH-000290
NCIH209_LUNG	WNK1--ERC1	52	20	WNK1	2732	chr12:863490:+	ERC1	64368	chr12:1345935:+	ONLY_REF_SPLICE	YES	88	30	0.45	0.71	0.5372	0.2066	{Klijn_CCL:Stomach=1,Kidney=1,Head-Neck=1},NEIGHBORS[79057],WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	NCIH209_LUNG	0.45	0.71	0.7438	FALSE	0	0	0	1	0	FALSE	ACH-000290
NCIH209_LUNG	SAMD1--NCL	35	0	SAMD1	2749	chr19:14200100:-	NCL	12973	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3616	0	SAMD1->chr19:14198652-14201848:-,sterile_alpha_motif_domain_containing_1,NCL->chr2:232318242-232348352:-,nucleolin	NCIH209_LUNG	1	1	0.3616	TRUE	0	0	0	3	0	TRUE	ACH-000290
NCIH209_LUNG	OR51S1--TP53I11	33	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3409	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH209_LUNG	1	1	0.3409	TRUE	402	216	10	229	0	FALSE	ACH-000290
NCIH209_LUNG	KIF1A--MT-ND4	31	3	KIF1A	46974	chr2:241659275:-	MT-ND4	56535	chrM:11226:+	INCL_NON_REF_SPLICE	YES	674	13060	0.05	0	0.3203	0.031	KIF1A->chr2:241653181-241759725:-,kinesin_family_member_1A,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH209_LUNG	0	0.05	0.3513	FALSE	0	0	0	1	0	FALSE	ACH-000290
NCIH209_LUNG	CTD-2008L17.1--RP11-456O19.2	23	30	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	11	0	0.83	1	0.2376	0.3099	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH209_LUNG	0.83	1	0.5475	FALSE	20	187	4	79	0	FALSE	ACH-000290
NCIH209_LUNG	MT-ND4--MT-ND4L	7	80	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	5	0	0.95	1	0.0723	0.8265	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH209_LUNG	0.95	1	0.8988	FALSE	344	826	44	306	0	FALSE	ACH-000290
NCIH209_LUNG	CTD-2008L17.1--RP11-456O19.2	22	14	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	11	5	0.77	0.88	0.2273	0.1446	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH209_LUNG	0.77	0.88	0.3719	FALSE	33	240	4	98	0	FALSE	ACH-000290
NCIH209_LUNG	MT-ND4--MT-ND4L	3	88	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	8	0	0.92	1	0.031	0.9091	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH209_LUNG	0.92	1	0.9401	FALSE	344	826	44	306	0	FALSE	ACH-000290
NCIH209_LUNG	MT-TA--MT-TC	22	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2273	0.031	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH209_LUNG	1	1	0.2583	FALSE	462	80	0	856	0	FALSE	ACH-000290
NCIH209_LUNG	MT-ND4--MT-ND4L	4	66	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	0	0.95	1	0.0413	0.6819	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH209_LUNG	0.95	1	0.7232	FALSE	344	821	44	306	0	FALSE	ACH-000290
NCIH209_LUNG	MT-ND4--MT-ND4L	3	57	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	9	0	0.87	1	0.031	0.5889	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH209_LUNG	0.87	1	0.6199	FALSE	344	826	44	306	0	FALSE	ACH-000290
NCIH209_LUNG	SCAI--PPP6C	13	15	SCAI	1874	chr9:127904912:-	PPP6C	36866	chr9:127933459:-	ONLY_REF_SPLICE	YES	37	367	0.43	0.07	0.1343	0.155	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_REARRANGEMENT:-:[3067],SCAI->chr9:127704887-127905785:-,suppressor_of_cancer_cell_invasion,PPP6C->chr9:127908852-127952218:-,protein_phosphatase_6_catalytic_subunit	NCIH209_LUNG	0.07	0.43	0.2893	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	MT-ND4--MT-ND4L	3	51	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	76	0	0.42	1	0.031	0.5269	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH209_LUNG	0.42	1	0.5579	FALSE	344	827	44	306	0	FALSE	ACH-000290
NCIH209_LUNG	RP11-123O10.4--GRIP1	3	38	RP11-123O10.4	2167	chr12:67285681:-	GRIP1	11081	chr12:66990707:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.031	0.3926	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH209_LUNG	0.98	1	0.4236	FALSE	0	5	0	12	0	FALSE	ACH-000290
NCIH209_LUNG	TRPC4AP--RP11-33I11.2	9	6	TRPC4AP	3504	chr20:33657099:-	RP11-33I11.2	24479	chr8:61721485:-	ONLY_REF_SPLICE	YES	153	0	0.09	1	0.093	0.062	TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,RP11-33I11.2->chr8:61721294-61722165:-	NCIH209_LUNG	0.09	1	0.155	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	CREBBP--SLX4	9	5	CREBBP	3608	chr16:3900298:-	SLX4	55137	chr16:3642866:-	ONLY_REF_SPLICE	YES	0	67	1	0.17	0.093	0.0517	{Klijn_CCL:Lung=1},CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,SLX4->SLX4_structure-specific_endonuclease_subunit,chr16:3631182-3661599:-	NCIH209_LUNG	0.17	1	0.1447	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	RP11-680G10.1--GSE1	8	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	39	1	0.29	0.0826	0.0826	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH209_LUNG	0.29	1	0.1652	TRUE	458	1351	185	561	0	FALSE	ACH-000290
NCIH209_LUNG	CASC9--RP11-300E4.2	8	5	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	22	0	0.37	1	0.0826	0.0517	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH209_LUNG	0.37	1	0.1343	TRUE	0	12	0	10	12	TRUE	ACH-000290
NCIH209_LUNG	GDAP1--RP11-758M4.1	6	13	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	224	2	0.08	0.9	0.062	0.1343	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH209_LUNG	0.08	0.9	0.1963	TRUE	7	28	0	43	0	FALSE	ACH-000290
NCIH209_LUNG	ZNF133--CSRP2BP	9	0	ZNF133	1128	chr20:18269248:+	CSRP2BP	16235	chr20:18122852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.093	0	GTEx&tcga_normals:1/3694=0.03%,ZNF133->chr20:18269121-18297640:+,zinc_finger_protein_133,CSRP2BP->Oncogene{Bushman},chr20:18118762-18169031:+	NCIH209_LUNG	1	1	0.093	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	RP11-123O10.4--GRIP1	4	19	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	5	1	0.82	0.0413	0.1963	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH209_LUNG	0.82	1	0.2376	FALSE	93	270	15	244	0	FALSE	ACH-000290
NCIH209_LUNG	RP11-120D5.1--MID1	7	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	12	0.81	0.52	0.0723	0.062	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH209_LUNG	0.52	0.81	0.1343	FALSE	16	356	14	466	0	FALSE	ACH-000290
NCIH209_LUNG	SAMD1--NCL	8	0	SAMD1	2749	chr19:14200100:-	NCL	12093	chr2:232326368:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0826	0	SAMD1->chr19:14198652-14201848:-,sterile_alpha_motif_domain_containing_1,NCL->chr2:232318242-232348352:-,nucleolin	NCIH209_LUNG	1	1	0.0826	TRUE	0	0	0	3	0	TRUE	ACH-000290
NCIH209_LUNG	MT-ND6--MT-TE	7	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0723	0.0207	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH209_LUNG	0.9	1	0.093	FALSE	499	1288	110	792	0	FALSE	ACH-000290
NCIH209_LUNG	RP11-680G10.1--GSE1	6	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	412	1	0.03	0.062	0.0517	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH209_LUNG	0.03	1	0.1137	TRUE	465	1949	224	605	0	FALSE	ACH-000290
NCIH209_LUNG	TRIM37--MSI2	6	5	TRIM37	24356	chr17:57105776:-	MSI2	36730	chr17:55334459:+	ONLY_REF_SPLICE	YES	97	16	0.1	0.41	0.062	0.0517	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2	NCIH209_LUNG	0.1	0.41	0.1137	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	SCAI--PPP6C	3	15	SCAI	1874	chr9:127904912:-	PPP6C	36045	chr9:127934280:-	ONLY_REF_SPLICE	YES	37	374	0.33	0.05	0.031	0.155	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_REARRANGEMENT:-:[3067],SCAI->chr9:127704887-127905785:-,suppressor_of_cancer_cell_invasion,PPP6C->chr9:127908852-127952218:-,protein_phosphatase_6_catalytic_subunit	NCIH209_LUNG	0.05	0.33	0.186	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	MT-ND6--MT-TE	6	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.062	0.0207	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH209_LUNG	0.89	1	0.0827	FALSE	499	1288	110	792	0	FALSE	ACH-000290
NCIH209_LUNG	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.062	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH209_LUNG	1	1	0.062	FALSE	13	9	0	364	0	FALSE	ACH-000290
NCIH209_LUNG	MT-ND6--MT-TE	4	7	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.73	1	0.0413	0.0723	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH209_LUNG	0.73	1	0.1136	FALSE	499	1288	110	792	0	FALSE	ACH-000290
NCIH209_LUNG	RP11-120D5.1--MID1	4	7	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	4	12	0.73	0.48	0.0413	0.0723	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH209_LUNG	0.48	0.73	0.1136	FALSE	0	9	0	55	0	FALSE	ACH-000290
NCIH209_LUNG	CASC9--RP11-300E4.2	4	6	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	28	0	0.26	1	0.0413	0.062	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH209_LUNG	0.26	1	0.1033	TRUE	0	23	0	19	23	TRUE	ACH-000290
NCIH209_LUNG	MT-ND6--MT-TE	5	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0517	0.0207	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH209_LUNG	0.88	1	0.0724	FALSE	499	1288	110	792	0	FALSE	ACH-000290
NCIH209_LUNG	XXbac-BPG252P9.9--TUBBP2	4	6	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	NO	4131	0	0	1	0.0413	0.062	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH209_LUNG	0	1	0.1033	FALSE	0	1	0	48	1	FALSE	ACH-000290
NCIH209_LUNG	MT-ND6--MT-TE	3	9	MT-ND6	1262	chrM:14412:-	MT-TE	4528	chrM:14740:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.031	0.093	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH209_LUNG	0.92	1	0.124	FALSE	499	1288	110	792	0	FALSE	ACH-000290
NCIH209_LUNG	MT-ND4--MT-ND4L	3	8	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	26	0	0.3	1	0.031	0.0826	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH209_LUNG	0.3	1	0.1136	FALSE	344	826	44	306	0	FALSE	ACH-000290
NCIH209_LUNG	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH209_LUNG	1	1	0.0517	TRUE	0	0	0	434	0	FALSE	ACH-000290
NCIH209_LUNG	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12568	chr4:174253271:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH209_LUNG	1	1	0.0517	TRUE	0	0	0	518	0	FALSE	ACH-000290
NCIH209_LUNG	MT-ND4--MT-ND4L	3	7	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	19	0	0.34	1	0.031	0.0723	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH209_LUNG	0.34	1	0.1033	FALSE	344	826	44	306	0	FALSE	ACH-000290
NCIH209_LUNG	PVRL3--CD96	4	2	PVRL3	2694	chr3:110791024:+	CD96	24930	chr3:111083360:+	ONLY_REF_SPLICE	YES	25	1	0.19	0.86	0.0413	0.0207	PROTCLUST,NEIGHBORS[17156],PVRL3->chr3:110788918-110994410:+,CD96->CD96_molecule,chr3:111011566-111384597:+	NCIH209_LUNG	0.19	0.86	0.062	FALSE	0	0	0	1	0	FALSE	ACH-000290
NCIH209_LUNG	XXbac-BPG252P9.9--TUBBP2	3	6	XXbac-BPG252P9.9	1259	chr6:30691396:-	TUBBP2	4811	chr13:41959282:-	INCL_NON_REF_SPLICE	NO	4523	0	0	1	0.031	0.062	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH209_LUNG	0	1	0.093	FALSE	0	1	0	48	1	FALSE	ACH-000290
NCIH209_LUNG	RP11-108K3.1--GLDN	3	5	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	1	0.89	0.89	0.031	0.0517	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH209_LUNG	0.89	0.89	0.0827	FALSE	0	19	0	46	0	FALSE	ACH-000290
NCIH209_LUNG	RP11-319G9.5--WWOX	4	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	47	1	0.1	0.0413	0.0103	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	NCIH209_LUNG	0.1	1	0.0516	FALSE	154	425	28	76	0	FALSE	ACH-000290
NCIH209_LUNG	RP11-444D3.1--SOX5	4	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	16	1	0.24	0.0413	0.0103	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH209_LUNG	0.24	1	0.0516	TRUE	477	1352	189	275	0	FALSE	ACH-000290
NCIH209_LUNG	XXbac-BPG252P9.9--TUBBP2	4	1	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	1708	0	0	1	0.0413	0.0103	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH209_LUNG	0	1	0.0516	FALSE	0	1	0	48	1	FALSE	ACH-000290
NCIH209_LUNG	CREBBP--SLX4	1	12	CREBBP	3608	chr16:3900298:-	SLX4	53990	chr16:3644600:-	ONLY_REF_SPLICE	YES	0	59	1	0.18	0.0103	0.124	{Klijn_CCL:Lung=1},CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,SLX4->SLX4_structure-specific_endonuclease_subunit,chr16:3631182-3661599:-	NCIH209_LUNG	0.18	1	0.1343	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	RP11-119F19.2--SFTPA2	4	0	RP11-119F19.2	1059	chr10:81526027:-	SFTPA2	9717	chr10:81319754:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	RP11-119F19.2->chr10:81422844-81526085:-,SFTPA2->chr10:81315608-81320153:-,surfactant_protein_A2	NCIH209_LUNG	1	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	RP11-96H19.1--RP11-446N19.1	4	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH209_LUNG	1	1	0.0413	FALSE	515	4851	409	746	0	FALSE	ACH-000290
NCIH209_LUNG	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1083	chr6:30691572:-	TUBBP2	4900	chr13:41959193:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH209_LUNG	1	1	0.0413	TRUE	0	1	0	48	1	FALSE	ACH-000290
NCIH209_LUNG	SLC25A32--RP11-318M2.2	3	3	SLC25A32	1406	chr8:104427012:-	RP11-318M2.2	13763	chr8:104298130:-	ONLY_REF_SPLICE	YES	86	9	0.07	0.4	0.031	0.031	NEIGHBORS[99863],SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,RP11-318M2.2->chr8:104169218-104311000:-	NCIH209_LUNG	0.07	0.4	0.062	FALSE	0	0	0	3	0	FALSE	ACH-000290
NCIH209_LUNG	RP11-120D5.1--MID1	2	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	3	5	0.73	0.62	0.0207	0.062	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH209_LUNG	0.62	0.73	0.0827	FALSE	0	23	1	67	0	FALSE	ACH-000290
NCIH209_LUNG	CALM3--MT-ATP8	3	1	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	477	0	0.01	1	0.031	0.0103	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH209_LUNG	0.01	1	0.0413	FALSE	12	0	0	26	0	FALSE	ACH-000290
NCIH209_LUNG	RP11-108K3.1--GLDN	2	5	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	1	1	0.88	0.88	0.0207	0.0517	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH209_LUNG	0.88	0.88	0.0724	FALSE	0	14	0	30	0	FALSE	ACH-000290
NCIH209_LUNG	TRPC4AP--CHD7	3	1	TRPC4AP	3504	chr20:33657099:-	CHD7	30083	chr8:61707545:+	ONLY_REF_SPLICE	YES	153	190	0.03	0.02	0.031	0.0103	TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH209_LUNG	0.02	0.03	0.0413	TRUE	0	0	0	1	0	FALSE	ACH-000290
NCIH209_LUNG	USP10--COTL1	3	1	USP10	1134	chr16:84733717:+	COTL1	26655	chr16:84623868:-	ONLY_REF_SPLICE	YES	34	1332	0.11	0	0.031	0.0103	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	NCIH209_LUNG	0	0.11	0.0413	FALSE	0	0	0	5	0	FALSE	ACH-000290
NCIH209_LUNG	FGF14-IT1--FGF14	3	0	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	NCIH209_LUNG	1	1	0.031	TRUE	71	201	23	28	0	FALSE	ACH-000290
NCIH209_LUNG	MSI2--TRIM37	1	8	MSI2	5660	chr17:55339553:+	TRIM37	60861	chr17:57148308:-	ONLY_REF_SPLICE	YES	251	89	0.03	0.09	0.0103	0.0826	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37	NCIH209_LUNG	0.03	0.09	0.0929	TRUE	0	0	0	1	0	FALSE	ACH-000290
NCIH209_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH209_LUNG	1	1	0.031	FALSE	499	1288	110	792	0	FALSE	ACH-000290
NCIH209_LUNG	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH209_LUNG	1	1	0.031	FALSE	462	80	0	856	0	FALSE	ACH-000290
NCIH209_LUNG	RP11-681L8.1--STPG2	3	0	RP11-681L8.1	1346	chr4:98554629:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH209_LUNG	1	1	0.031	TRUE	0	6	0	6	6	TRUE	ACH-000290
NCIH209_LUNG	SBF1--MT-ND4L	3	0	SBF1	8406	chr22:50900725:-	MT-ND4L	22936	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	SBF1->SET_binding_factor_1,chr22:50883429-50913454:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH209_LUNG	1	1	0.031	FALSE	0	0	0	1	0	FALSE	ACH-000290
NCIH209_LUNG	RP11-120D5.1--MID1	1	7	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	3	12	0.73	0.4	0.0103	0.0723	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH209_LUNG	0.4	0.73	0.0826	FALSE	2	31	0	60	0	FALSE	ACH-000290
NCIH209_LUNG	RP11-120D5.1--MID1	2	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	12	0.36	0.25	0.0207	0.0207	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH209_LUNG	0.25	0.36	0.0414	FALSE	0	48	1	163	0	FALSE	ACH-000290
NCIH209_LUNG	RP11-1L12.3--SLC5A12	1	6	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0103	0.062	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	NCIH209_LUNG	0.7	1	0.0723	TRUE	3	101	0	60	0	FALSE	ACH-000290
NCIH209_LUNG	SPATA6--GUCA2B	2	2	SPATA6	17065	chr1:48821342:-	GUCA2B	27025	chr1:42620351:+	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0207	0.0207	SPATA6->chr1:48761044-48937845:-,spermatogenesis_associated_6,GUCA2B->chr1:42619092-42621495:+,guanylate_cyclase_activator_2B	NCIH209_LUNG	0.18	1	0.0414	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	GDAP1--RP11-758M4.1	2	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	26767	chr8:75735503:+	ONLY_REF_SPLICE	NO	224	6	0.01	0.33	0.0207	0.0103	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH209_LUNG	0.01	0.33	0.031	FALSE	0	0	0	1	0	FALSE	ACH-000290
NCIH209_LUNG	ANXA7--SPIRE1	2	0	ANXA7	3333	chr10:75160561:-	SPIRE1	40300	chr18:12453137:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	ANXA7->annexin_A7,chr10:75134859-75173834:-,SPIRE1->chr18:12446511-12658133:-,spire_type_actin_nucleation_factor_1	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH209_LUNG	1	1	0.0207	TRUE	0	9	0	44	1	FALSE	ACH-000290
NCIH209_LUNG	EIF4A3--DSP	2	0	EIF4A3	3994	chr17:78115118:-	DSP	31441	chr6:7578012:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	EIF4A3->chr17:78109013-78120982:-,eukaryotic_translation_initiation_factor_4A3,DSP->chr6:7541808-7586950:+,desmoplakin	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	GOLPH3--SUB1	2	0	GOLPH3	1541	chr5:32173916:-	SUB1	22118	chr5:32599067:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3,SUB1->SUB1_homolog,_transcriptional_regulator,chr5:32531739-32604185:+	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	KHSRP--HMGN2	2	0	KHSRP	9953	chr19:6415152:-	HMGN2	16382	chr1:26800576:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	KHSRP->KH-type_splicing_regulatory_protein,chr19:6413359-6424805:-,HMGN2->chr1:26798941-26802463:+,high_mobility_group_nucleosomal_binding_domain_2	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH209_LUNG	1	1	0.0207	TRUE	3	14	2	43	0	FALSE	ACH-000290
NCIH209_LUNG	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH209_LUNG	1	1	0.0207	TRUE	145	312	16	51	0	FALSE	ACH-000290
NCIH209_LUNG	PRR4--SLC6A15	2	0	PRR4	3708	chr12:11199619:-	SLC6A15	27014	chr12:85286087:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),SLC6A15->chr12:85253492-85307394:-,solute_carrier_family_6_member_15	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	RP11-108K3.1--GLDN	1	4	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0103	0.0413	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH209_LUNG	0.83	1	0.0516	FALSE	0	14	0	30	0	FALSE	ACH-000290
NCIH209_LUNG	RP11-308B16.2--SLC30A9	2	0	RP11-308B16.2	2223	chr5:12571928:-	SLC30A9	25507	chr4:42088099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	RP11-308B16.2->chr5:12554002-12574749:-,SLC30A9->chr4:41992489-42092474:+,solute_carrier_family_30_member_9	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	TGOLN2--HNRNPA1	2	0	TGOLN2	1509	chr2:85555040:-	HNRNPA1	19778	chr12:54680446:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	TGOLN2->chr2:85545147-85555548:-,trans-golgi_network_protein_2,HNRNPA1->chr12:54673977-54680872:+,heterogeneous_nuclear_ribonucleoprotein_A1	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	TYMS--ZC3H13	2	0	TYMS	4286	chr18:662320:+	ZC3H13	26487	chr13:46554139:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	TYMS->chr18:657604-673578:+,thymidylate_synthetase,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	USP10--COTL1	2	0	USP10	1134	chr16:84733717:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	7	0	TRUE	ACH-000290
NCIH209_LUNG	USP10--COTL1	2	0	USP10	7066	chr16:84767109:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	5	0	TRUE	ACH-000290
NCIH209_LUNG	ZNF331--NARG2	2	0	ZNF331	2704	chr19:54025938:+	NARG2	46124	chr15:60715961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331,NARG2->chr15:60711808-60771359:-	NCIH209_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	RP11-108K3.1--GLDN	1	3	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	NO	1	0	0.8	1	0.0103	0.031	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH209_LUNG	0.8	1	0.0413	FALSE	1	20	0	46	0	FALSE	ACH-000290
NCIH209_LUNG	SLC25A32--RP11-318M2.2	1	2	SLC25A32	1406	chr8:104427012:-	RP11-318M2.2	25340	chr8:104178524:-	ONLY_REF_SPLICE	YES	86	1	0.03	0.75	0.0103	0.0207	NEIGHBORS[99863],SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,RP11-318M2.2->chr8:104169218-104311000:-	NCIH209_LUNG	0.03	0.75	0.031	FALSE	4	4	0	4	0	FALSE	ACH-000290
NCIH209_LUNG	SPATA6--GUCA2B	1	2	SPATA6	17017	chr1:48821390:-	GUCA2B	27025	chr1:42620351:+	ONLY_REF_SPLICE	NO	26	0	0.1	1	0.0103	0.0207	SPATA6->chr1:48761044-48937845:-,spermatogenesis_associated_6,GUCA2B->chr1:42619092-42621495:+,guanylate_cyclase_activator_2B	NCIH209_LUNG	0.1	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000290
NCIH209_LUNG	AGBL4--AGBL4-IT1	1	1	AGBL4	3399	chr1:50162985:-	AGBL4-IT1	30507	chr1:49840016:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0103	0.0103	NEIGHBORS_OVERLAP:-:-:[97884],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,AGBL4-IT1->AGBL4_intronic_transcript_1,chr1:49839873-49937757:-	NCIH209_LUNG	0.67	1	0.0206	FALSE	75	131	5	14	0	FALSE	ACH-000290
NCIH209_LUNG	DNAJC25--UGCG	1	1	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	136	37	0.01	0.05	0.0103	0.0103	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	NCIH209_LUNG	0.01	0.05	0.0206	FALSE	50	73	10	50	0	FALSE	ACH-000290
NCIH209_LUNG	EIF3H--RAD21	1	1	EIF3H	7051	chr8:117738255:-	RAD21	24431	chr8:117879000:-	ONLY_REF_SPLICE	YES	1139	70	0	0.03	0.0103	0.0103	LOCAL_REARRANGEMENT:-:[79010],EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-	NCIH209_LUNG	0	0.03	0.0206	FALSE	0	0	0	7	0	FALSE	ACH-000290
NCIH209_LUNG	GALNT9--NOC4L	1	1	GALNT9	2606	chr12:132862836:-	NOC4L	28001	chr12:132635526:+	ONLY_REF_SPLICE	NO	561	63	0	0.03	0.0103	0.0103	GTEx_FI:{Brain=[count:36=pct:5.5]},GTEx_v2:{count=51;pct=0.59%;dist=Brain_-_Cerebellum=14,Brain_-_Cerebellar_Hemisphere=12,Brain_-_Cortex=8,Brain_-_Frontal_Cortex_(BA9)=6,Brain_-_Hippocampus=4,Brain_-_Anterior_cingulate_cortex_(BA24)=4,Brain_-_Hypothalamus=1,Brain_-_Substantia_nigra=1,Brain_-_Amygdala=1},LOCAL_INVERSION:-:+:[43911],GALNT9->chr12:132680924-132905935:-,polypeptide_N-acetylgalactosaminyltransferase_9,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	NCIH209_LUNG	0	0.03	0.0206	FALSE	13	8	0	3	0	FALSE	ACH-000290
NCIH209_LUNG	KMT2C--RHEB	1	1	KMT2C	7421	chr7:152007051:-	RHEB	79165	chr7:151188100:-	ONLY_REF_SPLICE	YES	63	756	0.03	0	0.0103	0.0103	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,RHEB->Ras_homolog_enriched_in_brain,chr7:151163098-151217206:-	NCIH209_LUNG	0	0.03	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000290
NCIH209_LUNG	LINC01036--LINC01037	1	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0103	0.0103	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	NCIH209_LUNG	1	1	0.0206	FALSE	0	24	0	62	0	FALSE	ACH-000290
NCIH209_LUNG	NCALD--YWHAZ	1	1	NCALD	22535	chr8:102731480:-	YWHAZ	40070	chr8:101937267:-	ONLY_REF_SPLICE	YES	60	2193	0.03	0	0.0103	0.0103	NCALD->chr8:102698771-103137135:-,neurocalcin_delta,YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta	NCIH209_LUNG	0	0.03	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000290
NCIH209_LUNG	PTPN23--SMARCC1	1	1	PTPN23	1170	chr3:47422670:+	SMARCC1	16614	chr3:47814426:-	ONLY_REF_SPLICE	YES	40	185	0.05	0.01	0.0103	0.0103	PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23,SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-	NCIH209_LUNG	0.01	0.05	0.0206	FALSE	0	0	0	2	0	FALSE	ACH-000290
NCIH209_LUNG	R3HDM1--DARS	1	1	R3HDM1	1179	chr2:136289203:+	DARS	43642	chr2:136701050:-	ONLY_REF_SPLICE	YES	110	284	0.02	0.01	0.0103	0.0103	R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+,DARS->aspartyl-tRNA_synthetase,chr2:136664247-136743670:-	NCIH209_LUNG	0.01	0.02	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000290
NCIH209_LUNG	SECISBP2L--SLC33A1	1	1	SECISBP2L	5124	chr15:49325162:-	SLC33A1	31135	chr3:155560408:-	ONLY_REF_SPLICE	YES	36	62	0.05	0.03	0.0103	0.0103	SECISBP2L->SECIS_binding_protein_2_like,chr15:49280673-49338760:-,SLC33A1->chr3:155538813-155572218:-,solute_carrier_family_33_member_1	NCIH209_LUNG	0.03	0.05	0.0206	TRUE	0	0	0	1	0	FALSE	ACH-000290
NCIH209_LUNG	SP3--OLA1	1	1	SP3	2942	chr2:174828489:-	OLA1	22831	chr2:175094179:-	ONLY_REF_SPLICE	YES	108	479	0.02	0	0.0103	0.0103	SP3->Sp3_transcription_factor,chr2:174771187-174830430:-,OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-	NCIH209_LUNG	0	0.02	0.0206	FALSE	0	0	0	2	0	FALSE	ACH-000290
NCIH209_LUNG	TRPC4AP--CHD7	1	1	TRPC4AP	3504	chr20:33657099:-	CHD7	28652	chr8:61693559:+	ONLY_REF_SPLICE	NO	153	97	0.01	0.02	0.0103	0.0103	TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH209_LUNG	0.01	0.02	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000290
NCIH209_LUNG	TYMS--SET	1	1	TYMS	4286	chr18:662320:+	SET	17850	chr9:131453449:+	ONLY_REF_SPLICE	NO	974	598	0	0	0.0103	0.0103	TYMS->chr18:657604-673578:+,thymidylate_synthetase,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH209_LUNG	0	0	0.0206	FALSE	0	0	0	3	0	FALSE	ACH-000290
SUIT2_PANCREAS	TUBA1C--ENDOV	52	3	TUBA1C	7646	chr12:49658967:+	ENDOV	21205	chr17:78396006:+	ONLY_REF_SPLICE	YES	7	2	0.89	0.96	1.0804	0.0623	TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c,ENDOV->chr17:78388965-78411886:+,endonuclease_V	SUIT2_PANCREAS	0.89	0.96	1.1427	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	HNF4A--R3HDML	17	8	HNF4A	1154	chr20:42984493:+	R3HDML	26068	chr20:42979300:+	ONLY_REF_SPLICE	YES	12	3	0.68	0.89	0.3532	0.1662	LOCAL_REARRANGEMENT:+:[4465],HNF4A->chr20:42984340-43061485:+,hepatocyte_nuclear_factor_4_alpha,R3HDML->R3H_domain_containing_like,chr20:42965626-42979875:+	SUIT2_PANCREAS	0.68	0.89	0.5194	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	HNF4A--R3HDML	12	19	HNF4A	1154	chr20:42984493:+	R3HDML	23819	chr20:42972017:+	ONLY_REF_SPLICE	YES	12	0	0.72	1	0.2493	0.3947	LOCAL_REARRANGEMENT:+:[4465],HNF4A->chr20:42984340-43061485:+,hepatocyte_nuclear_factor_4_alpha,R3HDML->R3H_domain_containing_like,chr20:42965626-42979875:+	SUIT2_PANCREAS	0.72	1	0.644	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	HNF4A--R3HDML	12	15	HNF4A	1154	chr20:42984493:+	R3HDML	24952	chr20:42973903:+	ONLY_REF_SPLICE	YES	12	3	0.69	0.9	0.2493	0.3116	LOCAL_REARRANGEMENT:+:[4465],HNF4A->chr20:42984340-43061485:+,hepatocyte_nuclear_factor_4_alpha,R3HDML->R3H_domain_containing_like,chr20:42965626-42979875:+	SUIT2_PANCREAS	0.69	0.9	0.5609	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	MT-TA--MT-TC	9	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.187	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SUIT2_PANCREAS	1	1	0.187	FALSE	462	80	0	856	0	FALSE	ACH-000652
SUIT2_PANCREAS	PTGES3--SLC7A5	9	0	PTGES3	1359	chr12:57081801:-	SLC7A5	24761	chr16:87864905:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.187	0	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	SUIT2_PANCREAS	1	1	0.187	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	REV3L--TRERF1	6	0	REV3L	1966	chr6:111803953:-	TRERF1	50979	chr6:42330817:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1247	0	REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	SUIT2_PANCREAS	1	1	0.1247	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	MT-ND6--MT-TE	5	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.1039	0.0416	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUIT2_PANCREAS	0.88	1	0.1455	FALSE	499	1288	110	792	0	FALSE	ACH-000652
SUIT2_PANCREAS	TIMM23B--LINC00843	4	5	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0831	0.1039	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SUIT2_PANCREAS	1	1	0.187	TRUE	508	994	45	981	0	FALSE	ACH-000652
SUIT2_PANCREAS	ACTB--S100A11	4	0	ACTB	6689	chr7:5567959:-	S100A11	13102	chr1:152006250:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0831	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,S100A11->S100_calcium_binding_protein_A11,chr1:152004982-152020383:-	SUIT2_PANCREAS	1	1	0.0831	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	ROCK2--E2F6	3	1	ROCK2	4937	chr2:11426665:-	E2F6	40525	chr2:11597359:-	ONLY_REF_SPLICE	YES	6	8	0.4	0.33	0.0623	0.0208	LOCAL_REARRANGEMENT:-:[96045],ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,E2F6->E2F_transcription_factor_6,Oncogene{Bushman},chr2:11584501-11606297:-	SUIT2_PANCREAS	0.33	0.4	0.0831	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	ALDOA--TAPBP	3	0	ALDOA	7458	chr16:30077230:+	TAPBP	18464	chr6:33273135:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0623	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,TAPBP->TAP_binding_protein_(tapasin),chr6:33267471-33282164:-	SUIT2_PANCREAS	1	1	0.0623	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	CCAT1--CASC8	3	0	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0623	0	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SUIT2_PANCREAS	1	1	0.0623	TRUE	0	7	0	14	6	TRUE	ACH-000652
SUIT2_PANCREAS	FBL--ANP32B	3	0	FBL	2462	chr19:40331090:-	ANP32B	19926	chr9:100777676:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0623	0	FBL->chr19:40325098-40337054:-,fibrillarin,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	SUIT2_PANCREAS	1	1	0.0623	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	GALK2--PLEC	3	0	GALK2	19722	chr15:49584577:+	PLEC	60308	chr8:144994889:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0623	0	GALK2->chr15:49447853-49660066:+,galactokinase_2,PLEC->chr8:144989321-145050902:-,plectin	SUIT2_PANCREAS	1	1	0.0623	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	MARCH7--SSFA2	3	0	MARCH7	4468	chr2:160585686:+	SSFA2	43780	chr2:182794288:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0623	0	MARCH7->chr2:160569000-160627538:+,membrane_associated_ring-CH-type_finger_7,SSFA2->chr2:182756560-182795465:+,sperm_specific_antigen_2	SUIT2_PANCREAS	1	1	0.0623	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	MT-ND6--ARPC1B	3	0	MT-ND6	1367	chrM:14307:-	ARPC1B	11431	chr7:98985800:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0623	0	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+	SUIT2_PANCREAS	1	1	0.0623	FALSE	0	0	0	1	0	FALSE	ACH-000652
SUIT2_PANCREAS	SPTSSA--WDR81	3	0	SPTSSA	2317	chr14:34904455:-	WDR81	10701	chr17:1629565:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0623	0	SPTSSA->chr14:34901995-34931562:-,serine_palmitoyltransferase_small_subunit_A,WDR81->WD_repeat_domain_81,chr17:1619817-1641893:+	SUIT2_PANCREAS	1	1	0.0623	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	TUBA1C--ENDOV	2	3	TUBA1C	7646	chr12:49658967:+	ENDOV	20827	chr17:78395628:+	ONLY_REF_SPLICE	YES	7	2	0.42	0.71	0.0416	0.0623	TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c,ENDOV->chr17:78388965-78411886:+,endonuclease_V	SUIT2_PANCREAS	0.42	0.71	0.1039	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	CALU--C6orf62	2	0	CALU	3393	chr7:128388858:+	C6orf62	21514	chr6:24706490:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	CALU->calumenin,chr7:128379346-128411861:+,C6orf62->chr6:24705089-24721064:-,chromosome_6_open_reading_frame_62	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	DLGAP1-AS1--TGIF1	2	0	DLGAP1-AS1	1509	chr18:3594238:+	TGIF1	19646	chr18:3456352:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	DLGAP1-AS1->DLGAP1_antisense_RNA_1,chr18:3593730-3598350:+,TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	DPYD--DR1	2	0	DPYD	4686	chr1:98293670:-	DR1	39426	chr1:93826050:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,DR1->chr1:93811445-93835055:+,down-regulator_of_transcription_1	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	FBXW11--NPM1	2	0	FBXW11	1416	chr5:171433462:-	NPM1	29874	chr5:170818309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	GTEx_v2:{count=3;pct=0.03%;dist=Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Uterus=1},FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	G3BP1--CDKL3	2	0	G3BP1	1992	chr5:151151597:+	CDKL3	44665	chr5:133541822:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CDKL3->chr5:133541305-133706738:-,cyclin_dependent_kinase_like_3	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	GLG1--DYNC1LI2	2	0	GLG1	11811	chr16:74519694:-	DYNC1LI2	38486	chr16:66776571:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,DYNC1LI2->chr16:66754796-66785701:-,dynein_cytoplasmic_1_light_intermediate_chain_2	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	IP6K1--TACC3	2	0	IP6K1	1189	chr3:49823787:-	TACC3	28123	chr4:1746245:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	IP6K1->chr3:49761727-49823975:-,inositol_hexakisphosphate_kinase_1,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	KHDC1--PTGR1	2	0	KHDC1	2857	chr6:74001721:-	PTGR1	18387	chr9:114348445:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	KHDC1->KH_homology_domain_containing_1,chr6:73951037-74020088:-,PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	KLC1--CALM2	2	0	KLC1	13440	chr14:104145855:+	CALM2	30157	chr2:47397903:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	MATR3--CTNNA1	2	0	MATR3	9772	chr5:138629494:+	CTNNA1	42412	chr5:138117612:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	2	0	TRUE	ACH-000652
SUIT2_PANCREAS	PDE4D--ZFAND1	2	0	PDE4D	19661	chr5:59064073:-	ZFAND1	62690	chr8:82629523:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,ZFAND1->chr8:82613569-82645138:-,zinc_finger_AN1-type_containing_1	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	RAD23B--SRP14	2	0	RAD23B	8392	chr9:110081160:+	SRP14	20984	chr15:40328701:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	RAD23B->Oncogene{Bushman},RAD23_homolog_B,_nucleotide_excision_repair_protein,chr9:110045418-110094475:+,SRP14->chr15:40327940-40331389:-,signal_recognition_particle_14kDa	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	RNF114--BLMH	2	0	RNF114	2293	chr20:48558248:+	BLMH	23671	chr17:28576186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	RNF114->chr20:48552948-48570429:+,ring_finger_protein_114,BLMH->bleomycin_hydrolase,chr17:28575218-28619074:-	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	RPS6KB1--VMP1	2	0	RPS6KB1	4306	chr17:57987972:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	2	1	6	1	TRUE	ACH-000652
SUIT2_PANCREAS	SDHC--C18orf25	2	0	SDHC	6984	chr1:161310445:+	C18orf25	17761	chr18:43833663:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	SDHC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:161284047-161332984:+,succinate_dehydrogenase_complex_subunit_C,C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	SLC25A37--KAT6A	2	0	SLC25A37	1408	chr8:23386725:+	KAT6A	18643	chr8:41906820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	SLC25A37->chr8:23386318-23432976:+,solute_carrier_family_25_member_37,KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
SUIT2_PANCREAS	SUMF2--LARS	2	0	SUMF2	3658	chr7:56140804:+	LARS	28728	chr5:145524272:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2,LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase	SUIT2_PANCREAS	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000652
BCPAP_THYROID	AC104389.28--HBE1	245	0	AC104389.28	1084	chr11:5526799:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	2.3494	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	BCPAP_THYROID	1	1	2.3494	TRUE	0	16	0	53	13	FALSE	ACH-000456
BCPAP_THYROID	AARS--VAC14	76	3	AARS	3957	chr16:70310389:-	VAC14	33503	chr16:70778482:-	ONLY_REF_SPLICE	YES	224	43	0.26	0.65	0.7288	0.0288	AARS->alanyl-tRNA_synthetase,chr16:70286198-70323446:-,VAC14->Oncogene{Bushman},Vac14,_PIKFYVE_complex_component,chr16:70721342-70835064:-	BCPAP_THYROID	0.26	0.65	0.7576	TRUE	0	0	0	1	0	TRUE	ACH-000456
BCPAP_THYROID	KANSL1--ARL17B	71	22	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	22	19	0.81	0.83	0.6808	0.211	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	BCPAP_THYROID	0.81	0.83	0.8918	TRUE	181	1564	124	196	0	FALSE	ACH-000456
BCPAP_THYROID	TIMM23B--LINC00843	72	7	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.6904	0.0671	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BCPAP_THYROID	0.99	1	0.7575	TRUE	508	994	45	981	0	FALSE	ACH-000456
BCPAP_THYROID	RP11-307P5.1--SASH1	59	16	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	9	1	0.89	0.5658	0.1534	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	BCPAP_THYROID	0.89	1	0.7192	TRUE	0	2	0	37	2	FALSE	ACH-000456
BCPAP_THYROID	TIMM23--RP11-464F9.1	43	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4123	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BCPAP_THYROID	1	1	0.4123	TRUE	519	3926	326	965	0	FALSE	ACH-000456
BCPAP_THYROID	EEF2--FN1	33	1	EEF2	2532	chr19:3983936:-	FN1	13422	chr2:216300732:-	INCL_NON_REF_SPLICE	NO	5268	6	0.01	0.85	0.3164	0.0096	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.08%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BCPAP_THYROID	0.01	0.85	0.326	FALSE	0	0	0	2	0	FALSE	ACH-000456
BCPAP_THYROID	RP11-680G10.1--GSE1	28	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	12	1	0.71	0.2685	0.0192	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BCPAP_THYROID	0.71	1	0.2877	TRUE	465	1949	224	605	0	FALSE	ACH-000456
BCPAP_THYROID	RP11-96H19.1--RP11-446N19.1	22	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.93	1	0.211	0.0575	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BCPAP_THYROID	0.93	1	0.2685	FALSE	515	4851	409	746	0	FALSE	ACH-000456
BCPAP_THYROID	RP11-680G10.1--GSE1	22	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.211	0.0479	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BCPAP_THYROID	0.96	1	0.2589	TRUE	458	1351	185	561	0	FALSE	ACH-000456
BCPAP_THYROID	EEF2--FN1	23	0	EEF2	5784	chr19:3980684:-	FN1	49268	chr2:216243924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2206	0	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.08%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BCPAP_THYROID	1	1	0.2206	TRUE	0	0	0	1	0	TRUE	ACH-000456
BCPAP_THYROID	AC104389.28--HBE1	19	6	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	7	0	0.78	1	0.1822	0.0575	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	BCPAP_THYROID	0.78	1	0.2397	TRUE	0	48	0	65	48	FALSE	ACH-000456
BCPAP_THYROID	MT-ND6--MT-TE	16	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1534	0.0096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BCPAP_THYROID	1	1	0.163	FALSE	499	1288	110	792	0	FALSE	ACH-000456
BCPAP_THYROID	FN1--EEF2	14	4	FN1	12475	chr2:216285452:-	EEF2	59649	chr19:3980754:-	INCL_NON_REF_SPLICE	NO	8456	3340	0	0.01	0.1342	0.0384	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	BCPAP_THYROID	0	0.01	0.1726	FALSE	0	0	0	1	0	FALSE	ACH-000456
BCPAP_THYROID	RP11-466L17.1--RP11-90C4.1	15	0	RP11-466L17.1	2240	chr1:56080675:+	RP11-90C4.1	11159	chr1:56297937:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1438	0	NEIGHBORS[88805],RP11-466L17.1->chr1:56046710-56200675:+,RP11-90C4.1->chr1:56289480-56333921:+	BCPAP_THYROID	1	1	0.1438	FALSE	351	187	22	6	0	FALSE	ACH-000456
BCPAP_THYROID	CTD-2337A12.1--CAST	14	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1342	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	BCPAP_THYROID	1	1	0.1342	TRUE	347	1186	183	220	0	FALSE	ACH-000456
BCPAP_THYROID	AC104389.28--HBE1	13	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1247	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	BCPAP_THYROID	1	1	0.1247	TRUE	0	16	0	53	13	FALSE	ACH-000456
BCPAP_THYROID	NRIP1--AF127936.7	12	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	1	0.84	0.94	0.1151	0.0384	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BCPAP_THYROID	0.84	0.94	0.1535	FALSE	292	1546	117	613	0	FALSE	ACH-000456
BCPAP_THYROID	EEF2--FN1	8	7	EEF2	7087	chr19:3979381:-	FN1	13385	chr2:216300769:-	INCL_NON_REF_SPLICE	NO	3560	1	0	0.94	0.0767	0.0671	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.08%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BCPAP_THYROID	0	0.94	0.1438	FALSE	0	0	0	1	0	FALSE	ACH-000456
BCPAP_THYROID	EEF2--FN1	9	0	EEF2	6587	chr19:3979881:-	FN1	44407	chr2:216248787:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0863	0	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.08%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BCPAP_THYROID	1	1	0.0863	TRUE	0	0	0	1	0	TRUE	ACH-000456
BCPAP_THYROID	MT-ND6--MT-TE	6	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0.0863	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BCPAP_THYROID	1	1	0.1438	FALSE	499	1288	110	792	0	FALSE	ACH-000456
BCPAP_THYROID	RP11-444D3.1--SOX5	7	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0.0288	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	BCPAP_THYROID	1	1	0.0959	TRUE	477	1352	189	275	0	FALSE	ACH-000456
BCPAP_THYROID	MT-ND6--MT-TE	7	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0.0096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BCPAP_THYROID	1	1	0.0767	FALSE	499	1288	110	792	0	FALSE	ACH-000456
BCPAP_THYROID	EEF2--FN1	6	4	EEF2	8495	chr19:3977817:-	FN1	28365	chr2:216274704:-	INCL_NON_REF_SPLICE	NO	4473	6221	0	0	0.0575	0.0384	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.08%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BCPAP_THYROID	0	0	0.0959	FALSE	0	0	0	1	0	FALSE	ACH-000456
BCPAP_THYROID	EEF2--FN1	5	7	EEF2	7117	chr19:3979351:-	FN1	16925	chr2:216296636:-	INCL_NON_REF_SPLICE	YES	3839	6850	0	0	0.0479	0.0671	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.08%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BCPAP_THYROID	0	0	0.115	TRUE	0	0	0	1	0	FALSE	ACH-000456
BCPAP_THYROID	FN1--S100A6	6	3	FN1	12519	chr2:216285408:-	S100A6	55186	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	7929	4	0	0.69	0.0575	0.0288	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	BCPAP_THYROID	0	0.69	0.0863	FALSE	0	0	0	7	0	FALSE	ACH-000456
BCPAP_THYROID	CMTM8--CMTM7	6	2	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	26	36	0.24	0.18	0.0575	0.0192	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	BCPAP_THYROID	0.18	0.24	0.0767	FALSE	118	557	29	88	0	FALSE	ACH-000456
BCPAP_THYROID	RP1-34H18.1--NAV3	6	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0575	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	BCPAP_THYROID	1	1	0.0575	TRUE	254	575	65	124	0	FALSE	ACH-000456
BCPAP_THYROID	AC104389.28--HBE1	4	7	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	7	0	0.61	1	0.0384	0.0671	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	BCPAP_THYROID	0.61	1	0.1055	TRUE	0	35	0	55	35	FALSE	ACH-000456
BCPAP_THYROID	COL7A1--COL16A1	5	1	COL7A1	28265	chr3:48605143:-	COL16A1	52934	chr1:32148970:-	ONLY_REF_SPLICE	NO	385	94	0.02	0.06	0.0479	0.0096	HGNC_GENEFAM,PROTCLUST,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1,COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1	BCPAP_THYROID	0.02	0.06	0.0575	TRUE	0	0	0	1	0	FALSE	ACH-000456
BCPAP_THYROID	RP11-120D5.1--MID1	5	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	33	0.86	0.15	0.0479	0.0096	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	BCPAP_THYROID	0.15	0.86	0.0575	FALSE	16	356	14	466	0	FALSE	ACH-000456
BCPAP_THYROID	CCDC122--ENOX1	5	0	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0479	0	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	BCPAP_THYROID	1	1	0.0479	FALSE	39	52	2	34	0	FALSE	ACH-000456
BCPAP_THYROID	FN1--MT-ATP8	4	3	FN1	30132	chr2:216251516:-	MT-ATP8	55001	chrM:8431:+	INCL_NON_REF_SPLICE	NO	7751	0	0	1	0.0384	0.0288	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BCPAP_THYROID	0	1	0.0672	FALSE	0	5	0	4	0	FALSE	ACH-000456
BCPAP_THYROID	NRIP1--AF127936.7	3	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	71	1	0.12	0.91	0.0288	0.0671	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BCPAP_THYROID	0.12	0.91	0.0959	FALSE	164	806	69	479	0	FALSE	ACH-000456
BCPAP_THYROID	GNG10--UGCG	4	2	GNG10	2513	chr9:114429226:+	UGCG	9040	chr9:114676885:+	ONLY_REF_SPLICE	YES	210	309	0.03	0.02	0.0384	0.0192	GTEx_FI:{Brain=[count:10=pct:1.5],Blood=[count:7=pct:4.0],Adipose_Tissue=[count:5=pct:1.7],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Uterus=[count:1=pct:2.3],Esophagus=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6]},GNG10->G_protein_subunit_gamma_10,chr9:114423615-114432526:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	BCPAP_THYROID	0.02	0.03	0.0576	TRUE	28	83	9	3	0	FALSE	ACH-000456
BCPAP_THYROID	NRIP1--AF127936.7	3	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	42	1	0.18	0.9	0.0288	0.0575	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BCPAP_THYROID	0.18	0.9	0.0863	FALSE	125	705	46	456	0	FALSE	ACH-000456
BCPAP_THYROID	EEF2--FN1	3	4	EEF2	3531	chr19:3982937:-	FN1	13363	chr2:216300791:-	INCL_NON_REF_SPLICE	YES	3544	0	0	1	0.0288	0.0384	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.08%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BCPAP_THYROID	0	1	0.0672	FALSE	0	0	0	2	0	FALSE	ACH-000456
BCPAP_THYROID	FN1--S100A6	3	4	FN1	12528	chr2:216285399:-	S100A6	55195	chr1:153508461:-	INCL_NON_REF_SPLICE	YES	8277	4	0	0.64	0.0288	0.0384	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	BCPAP_THYROID	0	0.64	0.0672	FALSE	0	0	0	7	0	FALSE	ACH-000456
BCPAP_THYROID	FN1--S100A6	3	3	FN1	12522	chr2:216285405:-	S100A6	55189	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	7944	4	0	0.6	0.0288	0.0288	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	BCPAP_THYROID	0	0.6	0.0576	FALSE	0	0	0	7	0	FALSE	ACH-000456
BCPAP_THYROID	FN1--MT-ATP8	3	1	FN1	42562	chr2:216237070:-	MT-ATP8	55048	chrM:8478:+	INCL_NON_REF_SPLICE	YES	8752	239	0	0.02	0.0288	0.0096	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BCPAP_THYROID	0	0.02	0.0384	FALSE	0	2	0	3	0	FALSE	ACH-000456
BCPAP_THYROID	FN1--S100A6	3	1	FN1	20922	chr2:216269171:-	S100A6	55873	chr1:153507783:-	INCL_NON_REF_SPLICE	YES	6946	607	0	0.01	0.0288	0.0096	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	BCPAP_THYROID	0	0.01	0.0384	FALSE	0	0	0	1	0	FALSE	ACH-000456
BCPAP_THYROID	PRRG1--LANCL3	3	0	PRRG1	4586	chrX:37285253:+	LANCL3	17056	chrX:37514941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	PRRG1->chrX:37208528-37316548:+,proline_rich_and_Gla_domain_1,LANCL3->LanC_like_3,chrX:37430822-37543716:+	BCPAP_THYROID	1	1	0.0288	TRUE	1	2	0	5	2	TRUE	ACH-000456
BCPAP_THYROID	RCC1--SERINC2	3	0	RCC1	2175	chr1:28834672:+	SERINC2	30138	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	BCPAP_THYROID	1	1	0.0288	TRUE	0	24	0	2	11	TRUE	ACH-000456
BCPAP_THYROID	RP11-307P5.1--SASH1	2	4	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	16	9	0.27	0.4	0.0192	0.0384	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	BCPAP_THYROID	0.27	0.4	0.0576	TRUE	0	0	0	16	0	TRUE	ACH-000456
BCPAP_THYROID	RPS3--RPL22	3	0	RPS3	3900	chr11:75113429:+	RPL22	20119	chr1:6253006:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22	BCPAP_THYROID	1	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000456
BCPAP_THYROID	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0096	0.0671	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BCPAP_THYROID	1	1	0.0767	FALSE	467	2173	244	435	0	FALSE	ACH-000456
BCPAP_THYROID	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.78	1	0.0096	0.0575	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BCPAP_THYROID	0.78	1	0.0671	FALSE	407	2205	196	549	0	FALSE	ACH-000456
BCPAP_THYROID	DANCR--SERINC2	2	1	DANCR	1530	chr4:53579126:+	SERINC2	18554	chr1:31905814:+	ONLY_REF_SPLICE	YES	139	20	0.02	0.13	0.0192	0.0096	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	BCPAP_THYROID	0.02	0.13	0.0288	TRUE	0	9	0	3	2	TRUE	ACH-000456
BCPAP_THYROID	FN1--EEF2	1	5	FN1	32193	chr2:216248743:-	EEF2	62077	chr19:3978170:-	ONLY_REF_SPLICE	YES	8327	4125	0	0	0.0096	0.0479	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	BCPAP_THYROID	0	0	0.0575	FALSE	0	0	0	1	0	FALSE	ACH-000456
BCPAP_THYROID	RP4-565E6.1--HYDIN	2	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	2	1	0.6	0.0192	0.0096	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	BCPAP_THYROID	0.6	1	0.0288	TRUE	456	1387	91	133	0	FALSE	ACH-000456
BCPAP_THYROID	NRIP1--AF127936.7	2	0	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BCPAP_THYROID	1	1	0.0192	FALSE	8	57	1	47	0	FALSE	ACH-000456
BCPAP_THYROID	RP11-168O22.1--PCDH15	2	0	RP11-168O22.1	2183	chr10:57335410:-	PCDH15	9774	chr10:56926411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	BCPAP_THYROID	1	1	0.0192	TRUE	18	36	1	9	0	FALSE	ACH-000456
BCPAP_THYROID	RP11-307P5.1--SASH1	1	4	RP11-307P5.1	4371	chr6:148054947:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	88	9	0.05	0.36	0.0096	0.0384	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	BCPAP_THYROID	0.05	0.36	0.048	TRUE	0	0	0	11	0	TRUE	ACH-000456
BCPAP_THYROID	RP11-324C10.1--NLGN1	2	0	RP11-324C10.1	2141	chr3:172977603:+	NLGN1	14253	chr3:173322069:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	NEIGHBORS[59319],RP11-324C10.1->chr3:172871527-173054755:+,NLGN1->chr3:173114074-174004434:+,neuroligin_1	BCPAP_THYROID	1	1	0.0192	FALSE	0	4	0	4	0	FALSE	ACH-000456
BCPAP_THYROID	RPSAP52--HMGA2	2	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	BCPAP_THYROID	1	1	0.0192	FALSE	0	59	0	125	0	FALSE	ACH-000456
BCPAP_THYROID	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0096	0.0288	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	BCPAP_THYROID	1	1	0.0384	TRUE	274	363	69	150	0	FALSE	ACH-000456
BCPAP_THYROID	RP11-307P5.1--SASH1	1	2	RP11-307P5.1	6659	chr6:148268655:+	SASH1	15102	chr6:148761320:+	ONLY_REF_SPLICE	YES	0	44	1	0.06	0.0096	0.0192	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	BCPAP_THYROID	0.06	1	0.0288	TRUE	0	0	0	2	0	TRUE	ACH-000456
BCPAP_THYROID	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	21	1	0.12	0.0096	0.0192	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BCPAP_THYROID	0.12	1	0.0288	TRUE	64	13	3	59	0	FALSE	ACH-000456
BCPAP_THYROID	AARS--VAC14	1	1	AARS	3477	chr16:70310869:-	VAC14	33503	chr16:70778482:-	ONLY_REF_SPLICE	NO	233	43	0.01	0.04	0.0096	0.0096	AARS->alanyl-tRNA_synthetase,chr16:70286198-70323446:-,VAC14->Oncogene{Bushman},Vac14,_PIKFYVE_complex_component,chr16:70721342-70835064:-	BCPAP_THYROID	0.01	0.04	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000456
BCPAP_THYROID	COL8A1--CMSS1	1	1	COL8A1	12080	chr3:99463865:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	360	55	0.01	0.04	0.0096	0.0096	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	BCPAP_THYROID	0.01	0.04	0.0192	FALSE	4	4	0	17	0	FALSE	ACH-000456
BCPAP_THYROID	PPP1R12C--NOC4L	1	1	PPP1R12C	8950	chr19:55610152:-	NOC4L	24589	chr12:132635526:+	ONLY_REF_SPLICE	YES	44	23	0.04	0.08	0.0096	0.0096	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	BCPAP_THYROID	0.04	0.08	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000456
BCPAP_THYROID	RP11-324C10.1--NLGN1	1	1	RP11-324C10.1	2877	chr3:172978339:+	NLGN1	14253	chr3:173322069:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0096	0.0096	NEIGHBORS[59319],RP11-324C10.1->chr3:172871527-173054755:+,NLGN1->chr3:173114074-174004434:+,neuroligin_1	BCPAP_THYROID	1	1	0.0192	FALSE	0	4	0	4	0	FALSE	ACH-000456
HCC366_LUNG	RBM4--CCS	2076	867	RBM4	3939	chr11:66407594:+	CCS	17758	chr11:66366587:+	ONLY_REF_SPLICE	YES	780	177	0.79	0.94	24.0933	10.0621	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[10607],RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC366_LUNG	0.79	0.94	34.1554	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RBM4--CCS	310	993	RBM4	6699	chr11:66411611:+	CCS	17758	chr11:66366587:+	ONLY_REF_SPLICE	YES	428	177	0.75	0.88	3.5977	11.5244	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[10607],RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC366_LUNG	0.75	0.88	15.1221	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RBM4--CCS	11	998	RBM4	7302	chr11:66412214:+	CCS	17758	chr11:66366587:+	ONLY_REF_SPLICE	YES	410	177	0.71	0.85	0.1277	11.5824	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[10607],RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC366_LUNG	0.71	0.85	11.7101	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RBM4--CCS	3	907	RBM4	6587	chr11:66411499:+	CCS	17758	chr11:66366587:+	INCL_NON_REF_SPLICE	YES	414	177	0.69	0.84	0.0348	10.5263	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[10607],RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC366_LUNG	0.69	0.84	10.5611	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RBM4--CCS	5	869	RBM4	6087	chr11:66410999:+	CCS	17758	chr11:66366587:+	ONLY_REF_SPLICE	YES	770	177	0.53	0.83	0.058	10.0853	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[10607],RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC366_LUNG	0.53	0.83	10.1433	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RBM4--CCS	191	42	RBM4	1432	chr11:66384528:+	CCS	17758	chr11:66366587:+	ONLY_REF_SPLICE	YES	330	177	0.41	0.57	2.2167	0.4874	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[10607],RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC366_LUNG	0.41	0.57	2.7041	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RBM4--CCS	5	766	RBM4	3939	chr11:66407594:+	CCS	17766	chr11:66366595:+	INCL_NON_REF_SPLICE	YES	780	152	0.5	0.84	0.058	8.8899	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[10607],RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC366_LUNG	0.5	0.84	8.9479	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	TIMM23B--LINC00843	146	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.6944	0.383	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC366_LUNG	0.99	1	2.0774	TRUE	508	994	45	981	0	FALSE	ACH-000840
HCC366_LUNG	TIMM23--RP11-464F9.1	85	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	337	7	0.21	0.93	0.9865	0.0348	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC366_LUNG	0.21	0.93	1.0213	TRUE	519	3926	326	965	0	FALSE	ACH-000840
HCC366_LUNG	FLOT2--SEZ6	50	51	FLOT2	1154	chr17:27224544:-	SEZ6	19465	chr17:27287991:-	ONLY_REF_SPLICE	YES	137	0	0.42	1	0.5803	0.5919	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[57222],FLOT2->chr17:27206353-27224697:-,flotillin_2,SEZ6->chr17:27281919-27333458:-,seizure_related_6_homolog	HCC366_LUNG	0.42	1	1.1722	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	POU2F1--PLEKHO1	38	1	POU2F1	1130	chr1:167190195:+	PLEKHO1	49160	chr1:150128260:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.441	0.0116	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,PLEKHO1->chr1:150121373-150136916:+,pleckstrin_homology_domain_containing_O1	HCC366_LUNG	0.97	1	0.4526	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RP11-123O10.4--GRIP1	33	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.383	0.0928	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC366_LUNG	1	1	0.4758	FALSE	416	2512	207	587	0	FALSE	ACH-000840
HCC366_LUNG	KIF1C--MINK1	21	7	KIF1C	19321	chr17:4928446:+	MINK1	27941	chr17:4781612:+	INCL_NON_REF_SPLICE	YES	13	117	0.68	0.19	0.2437	0.0812	LOCAL_REARRANGEMENT:+:[99887],KIF1C->chr17:4901243-4931696:+,kinesin_family_member_1C,MINK1->chr17:4736683-4801356:+,misshapen_like_kinase_1	HCC366_LUNG	0.19	0.68	0.3249	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	NPM1P24--SET	22	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2553	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC366_LUNG	1	1	0.2553	TRUE	0	0	0	434	0	FALSE	ACH-000840
HCC366_LUNG	AP000525.9--LA16c-60G3.6	20	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	12	0	0.64	1	0.2321	0.0116	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HCC366_LUNG	0.64	1	0.2437	TRUE	0	42	0	133	42	FALSE	ACH-000840
HCC366_LUNG	MB21D2--FGF12	19	5	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	83	3	0.22	0.89	0.2205	0.058	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	HCC366_LUNG	0.22	0.89	0.2785	FALSE	0	17	0	46	0	FALSE	ACH-000840
HCC366_LUNG	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1973	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HCC366_LUNG	1	1	0.1973	TRUE	0	0	0	518	0	FALSE	ACH-000840
HCC366_LUNG	HIF1A-AS2--IMPG2	15	6	HIF1A-AS2	1213	chr14:62217603:-	IMPG2	17248	chr3:100972625:-	ONLY_REF_SPLICE	YES	6	0	0.78	1	0.1741	0.0696	HIF1A-AS2->HIF1A_antisense_RNA_2,chr14:62182276-62217815:-,IMPG2->chr3:100941390-101039404:-,interphotoreceptor_matrix_proteoglycan_2	HCC366_LUNG	0.78	1	0.2437	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	NRIP1--AF127936.7	15	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.85	1	0.1741	0.0232	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC366_LUNG	0.85	1	0.1973	FALSE	292	1546	117	613	0	FALSE	ACH-000840
HCC366_LUNG	TGFBI--FBXL21	14	6	TGFBI	2394	chr5:135369550:+	FBXL21	23605	chr5:135270044:+	ONLY_REF_SPLICE	YES	1850	1	0.01	0.95	0.1625	0.0696	LOCAL_REARRANGEMENT:+:[77304],TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced,FBXL21->F-box_and_leucine-rich_repeat_protein_21_(gene/pseudogene),chr5:135266006-135287280:+	HCC366_LUNG	0.01	0.95	0.2321	TRUE	0	0	0	1	0	FALSE	ACH-000840
HCC366_LUNG	FLOT2--SEZ6	5	34	FLOT2	1154	chr17:27224544:-	SEZ6	19519	chr17:27287937:-	INCL_NON_REF_SPLICE	YES	137	1	0.22	0.97	0.058	0.3946	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[57222],FLOT2->chr17:27206353-27224697:-,flotillin_2,SEZ6->chr17:27281919-27333458:-,seizure_related_6_homolog	HCC366_LUNG	0.22	0.97	0.4526	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	MT-TA--MT-TC	13	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1509	0.0116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC366_LUNG	1	1	0.1625	FALSE	462	80	0	856	0	FALSE	ACH-000840
HCC366_LUNG	FTH1--TUBB4B	13	0	FTH1	1217	chr11:61734916:-	TUBB4B	8320	chr9:140135809:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1509	0	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb	HCC366_LUNG	1	1	0.1509	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	FTH1--ACTB	10	2	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	5621	4	0	0.75	0.1161	0.0232	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HCC366_LUNG	0	0.75	0.1393	TRUE	1	0	0	97	0	FALSE	ACH-000840
HCC366_LUNG	FTH1--ACTB	9	3	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	6338	4	0	0.75	0.1045	0.0348	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HCC366_LUNG	0	0.75	0.1393	TRUE	1	0	0	97	0	FALSE	ACH-000840
HCC366_LUNG	NPM1P24--SET	9	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1045	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC366_LUNG	1	1	0.1045	TRUE	0	0	0	434	0	FALSE	ACH-000840
HCC366_LUNG	NRIP1--AF127936.7	7	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.67	1	0.0812	0.058	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC366_LUNG	0.67	1	0.1392	FALSE	125	705	46	456	0	FALSE	ACH-000840
HCC366_LUNG	RP11-34P13.13--ZDHHC11B	7	4	RP11-34P13.13	2242	chr1:172557:-	ZDHHC11B	23604	chr5:745413:-	ONLY_REF_SPLICE	YES	34	1	0.24	0.92	0.0812	0.0464	RP11-34P13.13->chr1:141474-173862:-,ZDHHC11B->chr5:710475-767067:-,zinc_finger_DHHC-type_containing_11B	HCC366_LUNG	0.24	0.92	0.1276	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	FTH1--ACTB	7	3	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	6714	4	0	0.71	0.0812	0.0348	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HCC366_LUNG	0	0.71	0.116	TRUE	1	0	0	97	0	FALSE	ACH-000840
HCC366_LUNG	FTH1--ACTB	7	2	FTH1	1222	chr11:61734911:-	ACTB	12534	chr7:5569289:-	INCL_NON_REF_SPLICE	YES	6163	209	0	0.04	0.0812	0.0232	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HCC366_LUNG	0	0.04	0.1044	TRUE	1	0	0	97	0	FALSE	ACH-000840
HCC366_LUNG	RP11-120D5.1--MID1	6	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	74	0.82	0.11	0.0696	0.0348	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC366_LUNG	0.11	0.82	0.1044	FALSE	16	356	14	466	0	FALSE	ACH-000840
HCC366_LUNG	CTD-2337A12.1--CAST	6	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	30	1	0.21	0.0696	0.0232	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HCC366_LUNG	0.21	1	0.0928	TRUE	347	1186	183	220	0	FALSE	ACH-000840
HCC366_LUNG	RP11-254I22.1--CTD-2337A12.1	6	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0696	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HCC366_LUNG	1	1	0.0696	TRUE	4	2	0	28	0	FALSE	ACH-000840
HCC366_LUNG	RP11-123O10.4--GRIP1	5	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.058	0.0348	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC366_LUNG	0.89	1	0.0928	FALSE	93	270	15	244	0	FALSE	ACH-000840
HCC366_LUNG	RP11-1319K7.1--RP11-1415C14.4	5	2	RP11-1319K7.1	9896	chr5:69400244:-	RP11-1415C14.4	22201	chr5:69438272:-	ONLY_REF_SPLICE	YES	10	13	0.41	0.35	0.058	0.0232	LOCAL_REARRANGEMENT:-:[11141],RP11-1319K7.1->chr5:69390202-69424261:-,RP11-1415C14.4->chr5:69435402-69503572:-	HCC366_LUNG	0.35	0.41	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RBM4--CCS	1	17	RBM4	6699	chr11:66411611:+	CCS	19131	chr11:66367960:+	ONLY_REF_SPLICE	YES	428	943	0.04	0.02	0.0116	0.1973	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[10607],RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC366_LUNG	0.02	0.04	0.2089	TRUE	0	0	0	1	0	FALSE	ACH-000840
HCC366_LUNG	SETD8--CDK2AP1	5	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.058	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	HCC366_LUNG	1	1	0.058	TRUE	0	0	0	18	0	TRUE	ACH-000840
HCC366_LUNG	SPAG17--C1orf194	4	3	SPAG17	37106	chr1:118537029:-	C1orf194	59384	chr1:109650659:-	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0464	0.0348	{Klijn_CCL:Lung=1},SPAG17->chr1:118496484-118727846:-,sperm_associated_antigen_17,C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194	HCC366_LUNG	0.64	1	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	PCAT1--RP11-382A18.2	4	2	PCAT1	5528	chr8:128026019:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0464	0.0232	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	HCC366_LUNG	1	1	0.0696	TRUE	0	2	0	1	2	TRUE	ACH-000840
HCC366_LUNG	YWHAE--CRK	4	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	2352	185	0	0.03	0.0464	0.0116	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	HCC366_LUNG	0	0.03	0.058	FALSE	6	50	7	115	0	FALSE	ACH-000840
HCC366_LUNG	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC366_LUNG	1	1	0.0464	FALSE	462	80	0	856	0	FALSE	ACH-000840
HCC366_LUNG	SLC16A5--AC111186.1	3	4	SLC16A5	6299	chr17:73094276:+	AC111186.1	14182	chr17:73070699:+	INCL_NON_REF_SPLICE	YES	19	0	0.27	1	0.0348	0.0464	LOCAL_REARRANGEMENT:+:[8178],SLC16A5->chr17:73083822-73102257:+,solute_carrier_family_16_member_5,AC111186.1->chr17:73070401-73075644:+	HCC366_LUNG	0.27	1	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	FTH1--ACTB	3	3	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	6349	4	0	0.6	0.0348	0.0348	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HCC366_LUNG	0	0.6	0.0696	FALSE	1	0	0	97	0	FALSE	ACH-000840
HCC366_LUNG	NRIP1--AF127936.7	2	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.47	1	0.0232	0.0812	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC366_LUNG	0.47	1	0.1044	FALSE	164	806	69	479	0	FALSE	ACH-000840
HCC366_LUNG	PAWR--RP1-78O14.1	3	3	PAWR	15902	chr12:79986391:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	124	0	0.05	1	0.0348	0.0348	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	HCC366_LUNG	0.05	1	0.0696	FALSE	3	4	0	12	0	FALSE	ACH-000840
HCC366_LUNG	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0.0348	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC366_LUNG	1	1	0.0696	FALSE	515	4851	409	746	0	FALSE	ACH-000840
HCC366_LUNG	JSRP1--RPS28	3	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0348	0.0232	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC366_LUNG	0.83	1	0.058	TRUE	0	1	0	84	1	FALSE	ACH-000840
HCC366_LUNG	MYH9--EIF3D	3	1	MYH9	7177	chr22:36723506:-	EIF3D	47062	chr22:36922178:-	ONLY_REF_SPLICE	YES	1059	38	0	0.1	0.0348	0.0116	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D	HCC366_LUNG	0	0.1	0.0464	FALSE	0	0	0	1	0	FALSE	ACH-000840
HCC366_LUNG	RP11-120D5.1--MID1	3	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	74	0.67	0.05	0.0348	0.0116	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC366_LUNG	0.05	0.67	0.0464	FALSE	0	48	1	163	0	FALSE	ACH-000840
HCC366_LUNG	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.44	0.0348	0.0116	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC366_LUNG	0.44	1	0.0464	TRUE	458	1351	185	561	0	FALSE	ACH-000840
HCC366_LUNG	SPAG17--C1orf194	3	1	SPAG17	37106	chr1:118537029:-	C1orf194	60299	chr1:109649744:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0348	0.0116	{Klijn_CCL:Lung=1},SPAG17->chr1:118496484-118727846:-,sperm_associated_antigen_17,C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194	HCC366_LUNG	0.5	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	C2orf61--CALM2	3	0	C2orf61	7327	chr2:47335527:-	CALM2	22283	chr2:47397903:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	LOCAL_REARRANGEMENT:-:[4704],C2orf61->chr2:47272677-47382517:-,chromosome_2_open_reading_frame_61,CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-	HCC366_LUNG	1	1	0.0348	TRUE	0	1	0	4	0	TRUE	ACH-000840
HCC366_LUNG	LGALS3BP--KRT18	3	0	LGALS3BP	4100	chr17:76972120:-	KRT18	11864	chr12:53342905:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,KRT18->chr12:53342655-53346685:+,keratin_18	HCC366_LUNG	1	1	0.0348	TRUE	0	0	0	9	0	TRUE	ACH-000840
HCC366_LUNG	POU2F1--PLEKHO1	3	0	POU2F1	1130	chr1:167190195:+	PLEKHO1	53828	chr1:150136392:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,PLEKHO1->chr1:150121373-150136916:+,pleckstrin_homology_domain_containing_O1	HCC366_LUNG	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	PSAP--ACTB	3	0	PSAP	6180	chr10:73587772:-	ACTB	22432	chr7:5567682:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	GTEx&tcga_normals:19/3694=0.51%,GTEx:0.05%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HCC366_LUNG	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RCC1--NVL	3	0	RCC1	2175	chr1:28834672:+	NVL	41053	chr1:224455835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	GTEx_v2:{count=4;pct=0.05%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=2},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,NVL->chr1:224415036-224518089:-,nuclear_VCP-like	HCC366_LUNG	1	1	0.0348	TRUE	0	1	0	1	0	TRUE	ACH-000840
HCC366_LUNG	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	HCC366_LUNG	1	1	0.0348	TRUE	22	156	2	142	0	FALSE	ACH-000840
HCC366_LUNG	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC366_LUNG	1	1	0.0348	TRUE	465	1949	224	605	0	FALSE	ACH-000840
HCC366_LUNG	TAF1--NONO	2	2	TAF1	20157	chrX:70618587:+	NONO	59408	chrX:70519792:+	ONLY_REF_SPLICE	YES	48	1163	0.08	0	0.0232	0.0232	LOCAL_REARRANGEMENT:+:[65096],TAF1->ArcherDX_panel,FoundationOne_panel,TATA-box_binding_protein_associated_factor_1,chrX:70586114-70752224:+,NONO->Oncogene{Bushman},chrX:70503042-70521018:+,non-POU_domain_containing,_octamer-binding	HCC366_LUNG	0	0.08	0.0464	FALSE	0	0	0	1	0	FALSE	ACH-000840
HCC366_LUNG	TGFBI--FBXL21	1	6	TGFBI	2394	chr5:135369550:+	FBXL21	23601	chr5:135270040:+	ONLY_REF_SPLICE	NO	1850	1	0	0.88	0.0116	0.0696	LOCAL_REARRANGEMENT:+:[77304],TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced,FBXL21->F-box_and_leucine-rich_repeat_protein_21_(gene/pseudogene),chr5:135266006-135287280:+	HCC366_LUNG	0	0.88	0.0812	FALSE	0	0	0	1	0	FALSE	ACH-000840
HCC366_LUNG	FLOT2--SEZ6	1	5	FLOT2	1154	chr17:27224544:-	SEZ6	20546	chr17:27286910:-	ONLY_REF_SPLICE	YES	137	40	0.04	0.13	0.0116	0.058	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[57222],FLOT2->chr17:27206353-27224697:-,flotillin_2,SEZ6->chr17:27281919-27333458:-,seizure_related_6_homolog	HCC366_LUNG	0.04	0.13	0.0696	TRUE	0	0	0	1	0	FALSE	ACH-000840
HCC366_LUNG	PICALM--SYTL2	2	1	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	478	22	0.01	0.12	0.0232	0.0116	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	HCC366_LUNG	0.01	0.12	0.0348	FALSE	4	2	0	20	0	FALSE	ACH-000840
HCC366_LUNG	POU2F1--PLEKHO1	2	1	POU2F1	5576	chr1:167288293:+	PLEKHO1	49160	chr1:150128260:+	ONLY_REF_SPLICE	YES	1	1	0.75	0.75	0.0232	0.0116	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,PLEKHO1->chr1:150121373-150136916:+,pleckstrin_homology_domain_containing_O1	HCC366_LUNG	0.75	0.75	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	RP11-1319K7.1--RP11-1415C14.4	2	1	RP11-1319K7.1	8728	chr5:69404135:-	RP11-1415C14.4	22201	chr5:69438272:-	ONLY_REF_SPLICE	YES	12	13	0.2	0.19	0.0232	0.0116	LOCAL_REARRANGEMENT:-:[11141],RP11-1319K7.1->chr5:69390202-69424261:-,RP11-1415C14.4->chr5:69435402-69503572:-	HCC366_LUNG	0.19	0.2	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	VTI1A--RP11-57H14.3	2	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	49	0	0.06	1	0.0232	0.0116	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HCC366_LUNG	0.06	1	0.0348	FALSE	272	151	14	158	0	FALSE	ACH-000840
HCC366_LUNG	AFAP1--ABLIM2	2	0	AFAP1	1271	chr4:7941383:-	ABLIM2	58657	chr4:7994654:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	HCC366_LUNG	1	1	0.0232	TRUE	0	0	0	2	0	TRUE	ACH-000840
HCC366_LUNG	AFAP1--ABLIM2	2	0	AFAP1	1271	chr4:7941383:-	ABLIM2	60984	chr4:7985071:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	HCC366_LUNG	1	1	0.0232	TRUE	0	1	0	3	1	TRUE	ACH-000840
HCC366_LUNG	CEBPG--PEPD	2	0	CEBPG	1566	chr19:33864801:+	PEPD	27769	chr19:33882385:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx_v2:{count=2;pct=0.02%;dist=Small_Intestine_-_Terminal_Ileum=1,Lung=1},LOCAL_INVERSION:+:-:[4264],CEBPG->CCAAT/enhancer_binding_protein_gamma,chr19:33864236-33873592:+,PEPD->chr19:33877856-34012700:-,peptidase_D	HCC366_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	ENO1--FLNA	2	0	ENO1	4225	chr1:8931950:-	FLNA	31922	chrX:153582095:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx&tcga_normals:2/3694=0.05%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,FLNA->chrX:153576892-153603006:-,filamin_A	HCC366_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	G3BP1--TNIP1	2	0	G3BP1	1992	chr5:151151597:+	TNIP1	33969	chr5:150443308:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,TNIP1->TNFAIP3_interacting_protein_1,chr5:150409506-150473138:-	HCC366_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	HIF1A--FOCAD	2	0	HIF1A	1327	chr14:62162557:+	FOCAD	72286	chr9:20976419:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,FOCAD->chr9:20658308-20995954:+,focadhesin	HCC366_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	IFT57--HNRNPD	2	0	IFT57	8220	chr3:107886640:-	HNRNPD	23320	chr4:83278048:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	IFT57->chr3:107879659-107941417:-,intraflagellar_transport_57,HNRNPD->Oncogene{Bushman},chr4:83273651-83295656:-,heterogeneous_nuclear_ribonucleoprotein_D	HCC366_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	OTUB1--COX8A	2	0	OTUB1	3602	chr11:63756224:+	COX8A	14254	chr11:63743697:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[9310],OTUB1->OTU_deubiquitinase,_ubiquitin_aldehyde_binding_1,chr11:63753325-63769283:+,COX8A->chr11:63742079-63744015:+,cytochrome_c_oxidase_subunit_8A	HCC366_LUNG	1	1	0.0232	TRUE	0	1	0	4	1	TRUE	ACH-000840
HCC366_LUNG	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HCC366_LUNG	1	1	0.0232	TRUE	0	2	1	13	0	FALSE	ACH-000840
HCC366_LUNG	PPFIA3--LIN7B	1	3	PPFIA3	17919	chr19:49649262:+	LIN7B	27206	chr19:49619520:+	ONLY_REF_SPLICE	YES	3	29	0.57	0.12	0.0116	0.0348	LOCAL_REARRANGEMENT:+:[929],PPFIA3->PTPRF_interacting_protein_alpha_3,chr19:49622646-49654283:+,LIN7B->chr19:49617581-49621717:+,lin-7_homolog_B,_crumbs_cell_polarity_complex_component	HCC366_LUNG	0.12	0.57	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000840
HCC366_LUNG	AFAP1--ABLIM2	1	2	AFAP1	1271	chr4:7941383:-	ABLIM2	53571	chr4:8010829:-	ONLY_REF_SPLICE	YES	397	2	0.01	0.6	0.0116	0.0232	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	HCC366_LUNG	0.01	0.6	0.0348	FALSE	0	1	0	2	1	FALSE	ACH-000840
HCC366_LUNG	FOSL1--DRAP1	1	2	FOSL1	1333	chr11:65667712:-	DRAP1	9128	chr11:65687251:+	ONLY_REF_SPLICE	YES	1047	1154	0	0	0.0116	0.0232	LOCAL_INVERSION:-:+:[18684],FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	HCC366_LUNG	0	0	0.0348	FALSE	0	0	0	6	0	FALSE	ACH-000840
HCC366_LUNG	ABCB7--UPRT	1	1	ABCB7	1628	chrX:74375940:-	UPRT	26096	chrX:74516177:+	ONLY_REF_SPLICE	YES	72	35	0.03	0.05	0.0116	0.0116	ABCB7->ATP_binding_cassette_subfamily_B_member_7,chrX:74273115-74376567:-,UPRT->chrX:74493920-74524435:+,uracil_phosphoribosyltransferase_homolog	HCC366_LUNG	0.03	0.05	0.0232	TRUE	0	0	0	2	0	FALSE	ACH-000840
HCC366_LUNG	C19orf25--DAZAP1	1	1	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	101	205	0.02	0.01	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	HCC366_LUNG	0.01	0.02	0.0232	FALSE	6	7	1	24	0	FALSE	ACH-000840
HCC366_LUNG	CD44--PDHX	1	1	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	NO	2758	117	0	0.02	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HCC366_LUNG	0	0.02	0.0232	FALSE	0	20	0	35	2	FALSE	ACH-000840
HCC366_LUNG	CUL4A--GOSR1	1	1	CUL4A	2851	chr13:113864402:+	GOSR1	29809	chr17:28808161:+	ONLY_REF_SPLICE	YES	136	3	0.01	0.4	0.0116	0.0116	CUL4A->chr13:113862552-113919399:+,cullin_4A,GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1	HCC366_LUNG	0.01	0.4	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000840
HCC366_LUNG	FAM20C--PRKAR1B	1	1	FAM20C	5852	chr7:208976:+	PRKAR1B	28324	chr7:647089:-	ONLY_REF_SPLICE	YES	126	120	0.02	0.02	0.0116	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cortex=1},{Klijn_CCL:Skin=1},FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	HCC366_LUNG	0.02	0.02	0.0232	TRUE	0	2	0	2	0	FALSE	ACH-000840
HCC366_LUNG	FOSL1--ACTG1	1	1	FOSL1	1333	chr11:65667712:-	ACTG1	11419	chr17:79479386:-	ONLY_REF_SPLICE	NO	1047	99	0	0.02	0.0116	0.0116	FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HCC366_LUNG	0	0.02	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000840
HCC366_LUNG	IRAK2--BRK1	1	1	IRAK2	2367	chr3:10219704:+	BRK1	19794	chr3:10167310:+	ONLY_REF_SPLICE	YES	99	625	0.02	0	0.0116	0.0116	LOCAL_REARRANGEMENT:+:[37675],IRAK2->Oncogene{Bushman},chr3:10206549-10285427:+,interleukin_1_receptor_associated_kinase_2,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	HCC366_LUNG	0	0.02	0.0232	FALSE	0	2	0	2	1	FALSE	ACH-000840
HCC366_LUNG	PAWR--RP1-78O14.1	1	1	PAWR	14819	chr12:79988109:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	177	0	0.01	1	0.0116	0.0116	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	HCC366_LUNG	0.01	1	0.0232	FALSE	0	4	0	4	0	FALSE	ACH-000840
HCC366_LUNG	PDHX--CD44	1	1	PDHX	1987	chr11:34938362:+	CD44	37425	chr11:35236399:+	ONLY_REF_SPLICE	NO	122	2653	0.02	0	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	HCC366_LUNG	0	0.02	0.0232	FALSE	0	1	0	9	0	FALSE	ACH-000840
HCC366_LUNG	PLEC--TUBB4B	1	1	PLEC	25438	chr8:145000952:-	TUBB4B	41353	chr9:140136948:+	ONLY_REF_SPLICE	NO	340	2117	0.01	0	0.0116	0.0116	PLEC->chr8:144989321-145050902:-,plectin,TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb	HCC366_LUNG	0	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000840
HCC366_LUNG	RP11-254I22.1--CTD-2337A12.1	1	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0.0116	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HCC366_LUNG	1	1	0.0232	TRUE	6	15	3	35	0	FALSE	ACH-000840
HCC366_LUNG	TRA2B--ZFAND6	1	1	TRA2B	1312	chr3:185655613:-	ZFAND6	32121	chr15:80412670:+	ONLY_REF_SPLICE	NO	539	148	0	0.01	0.0116	0.0116	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),ZFAND6->chr15:80351910-80430735:+,zinc_finger_AN1-type_containing_6	HCC366_LUNG	0	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000840
HCC366_LUNG	UVSSA--MAEA	1	1	UVSSA	7499	chr4:1349033:+	MAEA	26629	chr4:1305767:+	ONLY_REF_SPLICE	YES	28	37	0.07	0.05	0.0116	0.0116	GTEx_FI:{Blood=[count:5=pct:2.9],Skin=[count:4=pct:1.3],Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:1=pct:0.8],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[7119],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	HCC366_LUNG	0.05	0.07	0.0232	TRUE	2	0	0	5	0	FALSE	ACH-000840
HCC366_LUNG	VAPA--RAB31	1	1	VAPA	1334	chr18:9914332:+	RAB31	28565	chr18:9775275:+	ONLY_REF_SPLICE	YES	644	121	0	0.02	0.0116	0.0116	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Adrenal_Gland=1,Whole_Blood=1},{Klijn_CCL:Lung=1,Head-Neck=1},LOCAL_REARRANGEMENT:+:[51451],VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+	HCC366_LUNG	0	0.02	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000840
LN229_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	85	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9062	0.2665	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LN229_CENTRAL_NERVOUS_SYSTEM	0.99	1	1.1727	TRUE	508	994	45	981	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	DSN1--SOGA1	75	37	DSN1	3026	chr20:35399276:-	SOGA1	33047	chr20:35423002:-	ONLY_REF_SPLICE	YES	232	113	0.33	0.5	0.7996	0.3945	LOCAL_REARRANGEMENT:-:[3624],DSN1->DSN1_homolog,_MIS12_kinetochore_complex_component,chr20:35380194-35402221:-,SOGA1->chr20:35405845-35492089:-,suppressor_of_glucose,_autophagy_associated_1	LN229_CENTRAL_NERVOUS_SYSTEM	0.33	0.5	1.1941	TRUE	0	0	0	2	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	C16orf70--CBFB	64	30	C16orf70	3466	chr16:67159945:+	CBFB	26625	chr16:67132613:+	ONLY_REF_SPLICE	YES	48	278	0.66	0.25	0.6823	0.3198	{Klijn_CCL:Brain=1,Liver=1},LOCAL_REARRANGEMENT:+:[8900],C16orf70->chr16:67143861-67182442:+,chromosome_16_open_reading_frame_70,CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit	LN229_CENTRAL_NERVOUS_SYSTEM	0.25	0.66	1.0021	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	DSN1--SOGA1	48	10	DSN1	1157	chr20:35402065:-	SOGA1	33047	chr20:35423002:-	ONLY_REF_SPLICE	YES	57	113	0.5	0.34	0.5117	0.1066	LOCAL_REARRANGEMENT:-:[3624],DSN1->DSN1_homolog,_MIS12_kinetochore_complex_component,chr20:35380194-35402221:-,SOGA1->chr20:35405845-35492089:-,suppressor_of_glucose,_autophagy_associated_1	LN229_CENTRAL_NERVOUS_SYSTEM	0.34	0.5	0.6183	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	45	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	199	7	0.19	0.87	0.4797	0.0213	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.19	0.87	0.501	TRUE	519	3926	326	965	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	CDK12--KIF18B	28	9	CDK12	17299	chr17:37682569:+	KIF18B	43120	chr17:43006392:-	ONLY_REF_SPLICE	YES	37	171	0.5	0.18	0.2985	0.0959	CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12,KIF18B->chr17:43002077-43025082:-,kinesin_family_member_18B	LN229_CENTRAL_NERVOUS_SYSTEM	0.18	0.5	0.3944	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	PYGB--ENTPD6	24	15	PYGB	3534	chr20:25249843:+	ENTPD6	41430	chr20:25205841:+	ONLY_REF_SPLICE	YES	953	211	0.04	0.16	0.2559	0.1599	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[21340],PYGB->chr20:25228705-25278650:+,phosphorylase,_glycogen;_brain,ENTPD6->chr20:25176329-25207365:+,ectonucleoside_triphosphate_diphosphohydrolase_6_(putative)	LN229_CENTRAL_NERVOUS_SYSTEM	0.04	0.16	0.4158	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	PYGB--ENTPD6	23	17	PYGB	3534	chr20:25249843:+	ENTPD6	41387	chr20:25205798:+	ONLY_REF_SPLICE	YES	953	242	0.04	0.14	0.2452	0.1812	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[21340],PYGB->chr20:25228705-25278650:+,phosphorylase,_glycogen;_brain,ENTPD6->chr20:25176329-25207365:+,ectonucleoside_triphosphate_diphosphohydrolase_6_(putative)	LN229_CENTRAL_NERVOUS_SYSTEM	0.04	0.14	0.4264	TRUE	0	0	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	23	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2452	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.2452	TRUE	0	0	0	518	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	PAK1--NEAT1	19	0	PAK1	19665	chr11:77051763:-	NEAT1	36584	chr11:65195790:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2026	0	PAK1->Oncogene{Bushman},chr11:77032752-77185680:-,p21_(RAC1)_activated_kinase_1,NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding)	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.2026	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	CD59--FBXO3	12	26	CD59	8041	chr11:33738916:-	FBXO3	27528	chr11:33776046:-	ONLY_REF_SPLICE	YES	2631	54	0.01	0.41	0.1279	0.2772	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[4494],CD59->CD59_molecule,chr11:33719807-33757991:-,FBXO3->F-box_protein_3,chr11:33762485-33796089:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.01	0.41	0.4051	TRUE	0	1	0	1	1	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	CD59--FBXO3	11	22	CD59	8041	chr11:33738916:-	FBXO3	29918	chr11:33773153:-	ONLY_REF_SPLICE	YES	2631	63	0.01	0.34	0.1173	0.2345	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[4494],CD59->CD59_molecule,chr11:33719807-33757991:-,FBXO3->F-box_protein_3,chr11:33762485-33796089:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.01	0.34	0.3518	TRUE	0	1	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	13	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1386	0.0213	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.1599	FALSE	499	1288	110	792	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	11	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	79	48	0.2	0.29	0.1173	0.0959	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LN229_CENTRAL_NERVOUS_SYSTEM	0.2	0.29	0.2132	TRUE	267	562	48	632	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	12	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	11	1	0.59	0.1279	0.0426	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.59	1	0.1705	TRUE	477	1352	189	275	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	EIF4G3--RAB11FIP4	11	7	EIF4G3	6163	chr1:21437816:-	RAB11FIP4	62603	chr17:29844669:+	ONLY_REF_SPLICE	YES	7	0	0.72	1	0.1173	0.0746	EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3,RAB11FIP4->RAB11_family_interacting_protein_4,chr17:29718642-29865236:+	LN229_CENTRAL_NERVOUS_SYSTEM	0.72	1	0.1919	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	12	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1279	0.0107	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.1386	FALSE	416	2512	207	587	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	DSN1--SOGA1	9	12	DSN1	2474	chr20:35399828:-	SOGA1	33047	chr20:35423002:-	ONLY_REF_SPLICE	YES	221	113	0.09	0.16	0.0959	0.1279	LOCAL_REARRANGEMENT:-:[3624],DSN1->DSN1_homolog,_MIS12_kinetochore_complex_component,chr20:35380194-35402221:-,SOGA1->chr20:35405845-35492089:-,suppressor_of_glucose,_autophagy_associated_1	LN229_CENTRAL_NERVOUS_SYSTEM	0.09	0.16	0.2238	TRUE	0	0	0	2	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	9	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0959	0.0853	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN229_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.1812	FALSE	499	1288	110	792	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	VAC14--HYDIN	10	4	VAC14	1365	chr16:70834700:-	HYDIN	118532	chr16:70874136:-	ONLY_REF_SPLICE	YES	49	0	0.22	1	0.1066	0.0426	LOCAL_REARRANGEMENT:-:[6217],VAC14->Oncogene{Bushman},Vac14,_PIKFYVE_complex_component,chr16:70721342-70835064:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.22	1	0.1492	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	EIF4G3--RAB11FIP4	10	3	EIF4G3	1163	chr1:21503215:-	RAB11FIP4	62603	chr17:29844669:+	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.1066	0.032	EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3,RAB11FIP4->RAB11_family_interacting_protein_4,chr17:29718642-29865236:+	LN229_CENTRAL_NERVOUS_SYSTEM	0.87	1	0.1386	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	10	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1066	0.0107	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.1173	TRUE	458	1351	185	561	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	8	8	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	38	0.84	0.3	0.0853	0.0853	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.3	0.84	0.1706	FALSE	49	120	16	70	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	SPARC--RP11-54C4.1	9	2	SPARC	4762	chr5:151055693:-	RP11-54C4.1	19049	chr5:151145918:-	INCL_NON_REF_SPLICE	YES	3505	0	0	1	0.0959	0.0213	LOCAL_REARRANGEMENT:-:[78694],SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,RP11-54C4.1->chr5:151145420-151145939:-	LN229_CENTRAL_NERVOUS_SYSTEM	0	1	0.1172	TRUE	0	0	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	6	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	79	45	0.19	0.3	0.064	0.1386	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LN229_CENTRAL_NERVOUS_SYSTEM	0.19	0.3	0.2026	TRUE	267	562	48	632	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	LYPD1--NCKAP5	9	1	LYPD1	3871	chr2:133425973:-	NCKAP5	39136	chr2:133430878:-	ONLY_REF_SPLICE	YES	661	2	0.01	0.83	0.0959	0.0107	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[222],LYPD1->LY6/PLAUR_domain_containing_1,chr2:133402426-133429152:-,NCKAP5->NCK_associated_protein_5,chr2:133429374-134326034:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.01	0.83	0.1066	TRUE	0	0	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	9	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0959	0.0107	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN229_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.1066	FALSE	515	4851	409	746	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RSBN1L--RSBN1L-AS1	7	6	RSBN1L	1613	chr7:77326372:+	RSBN1L-AS1	19755	chr7:77314645:-	ONLY_REF_SPLICE	YES	50	33	0.21	0.28	0.0746	0.064	LOCAL_INVERSION:+:-:[178],RSBN1L->chr7:77325760-77412339:+,round_spermatid_basic_protein_1_like,RSBN1L-AS1->chr7:77286977-77325582:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.21	0.28	0.1386	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	DNM3--METTL13	7	3	DNM3	2411	chr1:171890961:+	METTL13	50465	chr1:171783015:+	ONLY_REF_SPLICE	YES	31	0	0.24	1	0.0746	0.032	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:+:[27458],DNM3->chr1:171810621-172387606:+,dynamin_3,METTL13->chr1:171750788-171783163:+,methyltransferase_like_13	LN229_CENTRAL_NERVOUS_SYSTEM	0.24	1	0.1066	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	7	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.59	1	0.0746	0.032	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.59	1	0.1066	FALSE	292	1546	117	613	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	6	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0.0533	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.1173	FALSE	462	80	0	856	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	6	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0.0533	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.1173	FALSE	462	80	0	856	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	7	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	18	1	0.31	0.0746	0.0107	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN229_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.0853	TRUE	465	1949	224	605	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	11	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0426	0.1173	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN229_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.1599	FALSE	499	1288	110	792	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	6	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0.0213	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0853	FALSE	499	1288	110	792	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	PKM--PPIA	5	6	PKM	16753	chr15:72494877:-	PPIA	23268	chr7:44836286:+	INCL_NON_REF_SPLICE	YES	5919	0	0	1	0.0533	0.064	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	LN229_CENTRAL_NERVOUS_SYSTEM	0	1	0.1173	TRUE	0	0	0	18	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	5	6	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	38	0.79	0.22	0.0533	0.064	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.22	0.79	0.1173	FALSE	141	264	50	91	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	MYH9--MT2A	6	1	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	909	3	0.01	0.7	0.064	0.0107	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	LN229_CENTRAL_NERVOUS_SYSTEM	0.01	0.7	0.0747	FALSE	0	0	0	24	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	NME7--RPRD2	6	1	NME7	16132	chr1:169204369:-	RPRD2	37672	chr1:150443037:+	ONLY_REF_SPLICE	YES	137	74	0.05	0.09	0.064	0.0107	NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2	LN229_CENTRAL_NERVOUS_SYSTEM	0.05	0.09	0.0747	TRUE	0	0	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RP11-498C9.2--GAPDH	6	0	RP11-498C9.2	1445	chr17:79801485:+	GAPDH	8196	chr12:6646518:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	RP11-498C9.2->chr17:79801041-79801834:+,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.064	TRUE	0	0	0	2	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	11	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.032	0.1173	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN229_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.1493	FALSE	499	1288	110	792	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	NUDT3--BRD2	5	2	NUDT3	1411	chr6:34360041:-	BRD2	20841	chr6:32939372:+	ONLY_REF_SPLICE	YES	81	23	0.08	0.23	0.0533	0.0213	NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3,BRD2->Oncogene{Bushman},bromodomain_containing_2,chr6:32936437-32949282:+	LN229_CENTRAL_NERVOUS_SYSTEM	0.08	0.23	0.0746	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	OXR1--AP006222.2	4	6	OXR1	4606	chr8:107531367:+	AP006222.2	41708	chr1:228776:-	ONLY_REF_SPLICE	YES	23	0	0.3	1	0.0426	0.064	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,AP006222.2->chr1:227615-267253:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.3	1	0.1066	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	C16orf70--CBFB	1	17	C16orf70	2382	chr16:67154097:+	CBFB	26625	chr16:67132613:+	ONLY_REF_SPLICE	YES	46	278	0.28	0.06	0.0107	0.1812	{Klijn_CCL:Brain=1,Liver=1},LOCAL_REARRANGEMENT:+:[8900],C16orf70->chr16:67143861-67182442:+,chromosome_16_open_reading_frame_70,CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit	LN229_CENTRAL_NERVOUS_SYSTEM	0.06	0.28	0.1919	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	SPAG1--POLR2K	5	1	SPAG1	1213	chr8:101170346:+	POLR2K	26625	chr8:101163575:+	ONLY_REF_SPLICE	YES	4	9	0.6	0.4	0.0533	0.0107	LOCAL_REARRANGEMENT:+:[3904],SPAG1->chr8:101170134-101271506:+,sperm_associated_antigen_1,POLR2K->chr8:101162812-101166230:+,polymerase_(RNA)_II_subunit_K	LN229_CENTRAL_NERVOUS_SYSTEM	0.4	0.6	0.064	TRUE	0	1	0	1	1	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	VDAC1--CTD-2410N18.5	5	1	VDAC1	1487	chr5:133340338:-	CTD-2410N18.5	16152	chr5:133509713:-	ONLY_REF_SPLICE	YES	140	9	0.04	0.4	0.0533	0.0107	VDAC1->chr5:133307606-133340824:-,voltage_dependent_anion_channel_1,CTD-2410N18.5->chr5:133502861-133561762:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.04	0.4	0.064	TRUE	0	0	0	6	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	5	0	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0533	FALSE	183	104	9	328	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.0746	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.1066	FALSE	499	1288	110	792	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	ELL--FKBP8	4	2	ELL	1207	chr19:18632731:-	FKBP8	25614	chr19:18644157:-	ONLY_REF_SPLICE	YES	33	449	0.15	0.01	0.0426	0.0213	GTEx_FI:{Esophagus=[count:1=pct:0.2],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[9624],ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.01	0.15	0.0639	FALSE	0	0	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	DPH6-AS1--RP11-684B21.1	4	1	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	10	0	0.33	1	0.0426	0.0107	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	LN229_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.0533	TRUE	17	119	17	33	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RAB2A--CHD7	4	0	RAB2A	1397	chr8:61429812:+	CHD7	20231	chr8:61653818:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0426	0	NEIGHBORS[55151],RAB2A->RAB2A,_member_RAS_oncogene_family,chr8:61429416-61536186:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0426	FALSE	0	2	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	SLC9A7--HCCAT5	4	0	SLC9A7	1351	chrX:46618140:-	HCCAT5	23043	chr16:73126980:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0426	0	SLC9A7->chrX:46464753-46618490:-,solute_carrier_family_9_member_A7,HCCAT5->chr16:73126248-73127673:+,hepatocellular_carcinoma_associated_transcript_5_(non-protein_coding)	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0426	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	AFG3L1P--TCF25	3	3	AFG3L1P	1180	chr16:90039173:+	TCF25	30080	chr16:89952256:+	ONLY_REF_SPLICE	YES	66	238	0.08	0.02	0.032	0.032	LOCAL_REARRANGEMENT:+:[61202],AFG3L1P->AFG3_like_matrix_AAA_peptidase_subunit_1,_pseudogene,chr16:90038994-90068569:+,TCF25->chr16:89940000-89977792:+,transcription_factor_25	LN229_CENTRAL_NERVOUS_SYSTEM	0.02	0.08	0.064	TRUE	0	0	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	CHD4--LPAR5	3	2	CHD4	6573	chr12:6708939:-	LPAR5	30438	chr12:6730630:-	ONLY_REF_SPLICE	YES	431	0	0.01	1	0.032	0.0213	LOCAL_REARRANGEMENT:-:[11359],CHD4->ArcherDX_panel,FoundationOne_panel,chr12:6679249-6716642:-,chromodomain_helicase_DNA_binding_protein_4,LPAR5->chr12:6728001-6745613:-,lysophosphatidic_acid_receptor_5	LN229_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0533	FALSE	0	0	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	FAM20C--AC093627.11	3	2	FAM20C	5852	chr7:208976:+	AC093627.11	18006	chr7:175664:+	ONLY_REF_SPLICE	YES	1708	2	0	0.71	0.032	0.0213	LOCAL_REARRANGEMENT:+:[16956],FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,AC093627.11->chr7:174920-176013:+	LN229_CENTRAL_NERVOUS_SYSTEM	0	0.71	0.0533	FALSE	0	0	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	LINC00511--SLC39A11	3	2	LINC00511	8867	chr17:70588342:-	SLC39A11	52513	chr17:70645407:-	ONLY_REF_SPLICE	YES	247	9	0.02	0.36	0.032	0.0213	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	LN229_CENTRAL_NERVOUS_SYSTEM	0.02	0.36	0.0533	TRUE	0	1	0	5	1	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.31	1	0.0213	0.064	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.0853	FALSE	125	705	46	456	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.032	FALSE	183	104	9	328	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.032	FALSE	183	104	9	328	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.032	FALSE	499	1288	110	792	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	NCOR2--UBC	3	0	NCOR2	3484	chr12:125002686:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.032	TRUE	7	26	3	12	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	12	1	0.33	0.0213	0.0426	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.0639	TRUE	160	277	29	98	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	11	1	0.31	0.0213	0.032	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.0533	TRUE	274	363	69	150	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	EIF4G3--FBXO42	2	2	EIF4G3	7239	chr1:21415631:-	FBXO42	63457	chr1:16580226:-	ONLY_REF_SPLICE	YES	38	27	0.1	0.13	0.0213	0.0213	EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3,FBXO42->F-box_protein_42,chr1:16573334-16678949:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.1	0.13	0.0426	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	1	6	RP11-141M1.3	8903	chr13:34013828:-	STARD13	19773	chr13:33850344:-	ONLY_REF_SPLICE	NO	3	52	0.7	0.12	0.0107	0.064	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.12	0.7	0.0747	FALSE	0	1	0	3	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0213	0.0213	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN229_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.0426	FALSE	407	2205	196	549	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	SLC25A20--SHISA5	2	2	SLC25A20	4586	chr3:48921430:-	SHISA5	18453	chr3:48520666:-	ONLY_REF_SPLICE	YES	41	110	0.09	0.04	0.0213	0.0213	SLC25A20->chr3:48894369-48936426:-,solute_carrier_family_25_member_20,SHISA5->chr3:48509197-48542259:-,shisa_family_member_5	LN229_CENTRAL_NERVOUS_SYSTEM	0.04	0.09	0.0426	TRUE	0	0	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	AGPS--HNRNPA3	2	1	AGPS	3587	chr2:178299145:+	HNRNPA3	31539	chr2:178080267:+	ONLY_REF_SPLICE	YES	88	518	0.03	0.01	0.0213	0.0107	AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+,HNRNPA3->Oncogene{Bushman},chr2:178077291-178088686:+,heterogeneous_nuclear_ribonucleoprotein_A3	LN229_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	ATP2B4--GPR161	2	1	ATP2B4	1659	chr1:203596347:+	GPR161	38778	chr1:168083787:-	ONLY_REF_SPLICE	YES	53	16	0.05	0.16	0.0213	0.0107	ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,GPR161->G_protein-coupled_receptor_161,Oncogene{Bushman},chr1:168053997-168106821:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.05	0.16	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	LAMB1--CTD-2537O9.1	2	1	LAMB1	4908	chr7:107635332:-	CTD-2537O9.1	40632	chr11:84511574:+	ONLY_REF_SPLICE	YES	517	0	0.01	1	0.0213	0.0107	LAMB1->chr7:107564244-107643700:-,laminin_subunit_beta_1,CTD-2537O9.1->chr11:84431869-84511744:+	LN229_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	1	5	RP11-141M1.3	5599	chr13:34098375:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	6	38	0.5	0.14	0.0107	0.0533	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.14	0.5	0.064	FALSE	9	22	2	16	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	SLC27A1--MVB12A	2	1	SLC27A1	2506	chr19:17581516:+	MVB12A	23807	chr19:17531122:+	ONLY_REF_SPLICE	YES	34	166	0.08	0.02	0.0213	0.0107	LOCAL_REARRANGEMENT:+:[35045],SLC27A1->Oncogene{Bushman},chr19:17579578-17616977:+,solute_carrier_family_27_member_1,MVB12A->chr19:17516531-17544533:+,multivesicular_body_subunit_12A	LN229_CENTRAL_NERVOUS_SYSTEM	0.02	0.08	0.032	TRUE	0	0	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	ATF7--ETV6	2	0	ATF7	1137	chr12:54020063:-	ETV6	37669	chr12:12043875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	GALK1--NME4	2	0	GALK1	5574	chr17:73754115:-	NME4	12124	chr16:448990:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GALK1->chr17:73747675-73761792:-,galactokinase_1,NME4->NME/NM23_nucleoside_diphosphate_kinase_4,chr16:446725-460367:+	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	KDM2A--MMP13	2	0	KDM2A	8041	chr11:66949363:+	MMP13	41132	chr11:102816478:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A,MMP13->chr11:102813724-102826463:-,matrix_metallopeptidase_13	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	MINOS1--CAPZB	2	0	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	2	7	0	21	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	MON1B--CPNE1	2	0	MON1B	1799	chr16:77225530:+	CPNE1	18324	chr20:34220845:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	MON1B->MON1_homolog_B,_secretory_trafficking_associated,chr16:77224732-77236302:+,CPNE1->chr20:34213953-34252878:-,copine_1	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	POLR3H--PMM1	2	0	POLR3H	2952	chr22:41936703:-	PMM1	23915	chr22:41973927:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_REARRANGEMENT:-:[32288],POLR3H->chr22:41921808-41940610:-,polymerase_(RNA)_III_subunit_H,PMM1->chr22:41972898-41985894:-,phosphomannomutase_1	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	SPARC--ATOX1	2	0	SPARC	4762	chr5:151055693:-	ATOX1	23120	chr5:151131340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_REARRANGEMENT:-:[55151],SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,ATOX1->antioxidant_1_copper_chaperone,chr5:151121877-151152093:-	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	SPARC--ATOX1	2	0	SPARC	10781	chr5:151047028:-	ATOX1	23120	chr5:151131340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_REARRANGEMENT:-:[55151],SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,ATOX1->antioxidant_1_copper_chaperone,chr5:151121877-151152093:-	LN229_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0107	0.0213	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN229_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.032	FALSE	275	511	55	178	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	VAPB--GNAS	1	2	VAPB	1396	chr20:56964573:+	GNAS	36861	chr20:57470667:+	ONLY_REF_SPLICE	YES	155	893	0.02	0	0.0107	0.0213	VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	LN229_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.032	FALSE	0	3	0	7	1	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	ATP2B4--GPR161	1	1	ATP2B4	1659	chr1:203596347:+	GPR161	39907	chr1:168074132:-	ONLY_REF_SPLICE	YES	53	20	0.04	0.09	0.0107	0.0107	ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,GPR161->G_protein-coupled_receptor_161,Oncogene{Bushman},chr1:168053997-168106821:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.04	0.09	0.0214	TRUE	0	0	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	COL11A1--CHMP1A	1	1	COL11A1	21765	chr1:103467481:-	CHMP1A	68318	chr16:89713739:-	ONLY_REF_SPLICE	YES	506	352	0	0.01	0.0107	0.0107	COL11A1->Oncogene{Bushman},chr1:103342023-103574052:-,collagen_type_XI_alpha_1,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	LN229_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	CUL1--EZH2	1	1	CUL1	2116	chr7:148396121:+	EZH2	26148	chr7:148544397:-	ONLY_REF_SPLICE	YES	147	57	0.01	0.03	0.0107	0.0107	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:+:-:[6347],CUL1->Oncogene{Bushman},chr7:148395006-148498128:+,cullin_1,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	LN229_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0214	FALSE	0	0	0	2	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	FAM20C--DAZAP1	1	1	FAM20C	5852	chr7:208976:+	DAZAP1	21512	chr19:1417499:+	ONLY_REF_SPLICE	YES	1708	220	0	0.01	0.0107	0.0107	FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	LN229_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0214	FALSE	0	0	0	3	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	SNHG5--PTTG1	1	1	SNHG5	1780	chr6:86387672:-	PTTG1	9687	chr5:159849309:+	ONLY_REF_SPLICE	YES	1091	99	0	0.02	0.0107	0.0107	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,PTTG1->Oncogene{Bushman},chr5:159848829-159855748:+,pituitary_tumor-transforming_1	LN229_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	SRFBP1--CTD-2410N18.5	1	1	SRFBP1	1108	chr5:121297763:+	CTD-2410N18.5	16170	chr5:133509713:-	ONLY_REF_SPLICE	YES	3	9	0.4	0.18	0.0107	0.0107	SRFBP1->chr5:121297656-121411265:+,serum_response_factor_binding_protein_1,CTD-2410N18.5->chr5:133502861-133561762:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.18	0.4	0.0214	TRUE	0	1	0	1	1	TRUE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	XPR1--ACBD6	1	1	XPR1	2319	chr1:180651547:+	ACBD6	34890	chr1:180283857:-	ONLY_REF_SPLICE	YES	54	175	0.04	0.01	0.0107	0.0107	GTEx_FI:{Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6],Brain=[count:1=pct:0.2]},GTEx_v2:{count=6;pct=0.07%;dist=Testis=2,Lung=1,Whole_Blood=1,Heart_-_Atrial_Appendage=1,Brain_-_Cortex=1},XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.01	0.04	0.0214	FALSE	0	2	1	1	2	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	XPR1--ACBD6	1	1	XPR1	3421	chr1:180756990:+	ACBD6	34890	chr1:180283857:-	ONLY_REF_SPLICE	NO	50	175	0.04	0.01	0.0107	0.0107	GTEx_FI:{Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6],Brain=[count:1=pct:0.2]},GTEx_v2:{count=6;pct=0.07%;dist=Testis=2,Lung=1,Whole_Blood=1,Heart_-_Atrial_Appendage=1,Brain_-_Cortex=1},XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.01	0.04	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000595
LN229_CENTRAL_NERVOUS_SYSTEM	ZNF736--CHMP1A	1	1	ZNF736	8361	chr7:63797360:+	CHMP1A	24290	chr16:89713739:-	ONLY_REF_SPLICE	NO	20	352	0.09	0.01	0.0107	0.0107	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adipose_Tissue=[count:2=pct:0.7],Breast=[count:2=pct:1.8],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=25;pct=0.29%;dist=Thyroid=4,Cells_-_Transformed_fibroblasts=3,Breast_-_Mammary_Tissue=2,Esophagus_-_Mucosa=2,Ovary=1,Pancreas=1,Lung=1,Vagina=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Colon_-_Sigmoid=1,Testis=1,Colon_-_Transverse=1},ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	LN229_CENTRAL_NERVOUS_SYSTEM	0.01	0.09	0.0214	FALSE	10	14	2	10	0	FALSE	ACH-000595
NCIH1623_LUNG	SUPT20H--RPLP1	191	37	SUPT20H	25747	chr13:37591382:-	RPLP1	34062	chr15:69745181:+	INCL_NON_REF_SPLICE	YES	37	0	0.86	1	1.5532	0.3009	SUPT20H->SPT20_homolog,_SAGA_complex_component,chr13:37583449-37633850:-,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	NCIH1623_LUNG	0.86	1	1.8541	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	PPP1R12A--RP1-78O14.1	152	40	PPP1R12A	1766	chr12:80328475:-	RP1-78O14.1	41348	chr12:79787705:-	ONLY_REF_SPLICE	YES	56	0	0.77	1	1.2361	0.3253	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,RP1-78O14.1->chr12:79734985-79897176:-	NCIH1623_LUNG	0.77	1	1.5614	TRUE	0	0	0	2	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	146	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.99	1	1.1873	0.0569	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.99	1	1.2442	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TC	142	11	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1548	0.0895	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1623_LUNG	1	1	1.2443	FALSE	462	80	0	856	0	FALSE	ACH-000744
NCIH1623_LUNG	NDUFS1--GPR1	116	29	NDUFS1	3677	chr2:207017143:-	GPR1	34934	chr2:207041999:-	ONLY_REF_SPLICE	YES	92	9	0.61	0.94	0.9433	0.2358	LOCAL_REARRANGEMENT:-:[15713],NDUFS1->NADH:ubiquinone_oxidoreductase_core_subunit_S1,chr2:206979541-207024327:-,GPR1->G_protein-coupled_receptor_1,chr2:207040040-207082771:-	NCIH1623_LUNG	0.61	0.94	1.1791	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	TIMM23B--LINC00843	108	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8783	0.2277	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1623_LUNG	0.99	1	1.106	TRUE	508	994	45	981	0	FALSE	ACH-000744
NCIH1623_LUNG	UNC119--PIGS	97	11	UNC119	6727	chr17:26873960:-	PIGS	19849	chr17:26881896:-	INCL_NON_REF_SPLICE	YES	10	88	0.92	0.55	0.7888	0.0895	LOCAL_REARRANGEMENT:-:[715],UNC119->chr17:26873725-26879686:-,unc-119_lipid_binding_chaperone,PIGS->chr17:26880401-26898890:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_S	NCIH1623_LUNG	0.55	0.92	0.8783	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	RBM47--APBB2	78	39	RBM47	3565	chr4:40546439:-	APBB2	46528	chr4:40832594:-	ONLY_REF_SPLICE	YES	105	11	0.53	0.91	0.6343	0.3172	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	NCIH1623_LUNG	0.53	0.91	0.9515	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	13	296	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	39	0	0.89	1	0.1057	2.4071	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.89	1	2.5128	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	10	301	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	55	0	0.85	1	0.0813	2.4478	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.85	1	2.5291	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	9	301	MT-ND4	1197	chrM:10956:+	MT-ND4L	5432	chrM:10523:+	INCL_NON_REF_SPLICE	YES	56	0	0.85	1	0.0732	2.4478	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.85	1	2.521	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	7	307	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	856	0	0.27	1	0.0569	2.4965	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.27	1	2.5534	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	4	314	MT-ND4	1937	chrM:11696:+	MT-ND4L	5386	chrM:10477:+	INCL_NON_REF_SPLICE	YES	21720	0	0.01	1	0.0325	2.5535	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.01	1	2.586	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	9	292	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	24	0	0.93	1	0.0732	2.3746	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.93	1	2.4478	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	8	296	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	38	0	0.89	1	0.0651	2.4071	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.89	1	2.4722	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	4	308	MT-ND4	1735	chrM:11494:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	6404	0	0.05	1	0.0325	2.5047	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.05	1	2.5372	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	5	302	MT-ND4	1222	chrM:10981:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	NO	64	0	0.83	1	0.0407	2.4559	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.83	1	2.4966	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	5	301	MT-ND4	1501	chrM:11260:+	MT-ND4L	5523	chrM:10614:+	INCL_NON_REF_SPLICE	YES	939	0	0.25	1	0.0407	2.4478	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.25	1	2.4885	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	5	301	MT-ND4	1754	chrM:11513:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	YES	7459	0	0.04	1	0.0407	2.4478	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.04	1	2.4885	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	6	295	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	24	0	0.93	1	0.0488	2.399	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.93	1	2.4478	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	4	301	MT-ND4	1451	chrM:11210:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	568	0	0.35	1	0.0325	2.4478	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.35	1	2.4803	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	GNB1--C1orf222	72	27	GNB1	8614	chr1:1747195:-	C1orf222	35633	chr1:1897965:-	ONLY_REF_SPLICE	YES	308	0	0.24	1	0.5855	0.2196	LOCAL_REARRANGEMENT:-:[30901],GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-,C1orf222->chr1:1853396-1935276:-	NCIH1623_LUNG	0.24	1	0.8051	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	303	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	62	0	0.83	1	0.0244	2.464	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.83	1	2.4884	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	4	299	MT-ND4	1299	chrM:11058:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	YES	138	0	0.69	1	0.0325	2.4315	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.69	1	2.464	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	4	298	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	46	0	0.87	1	0.0325	2.4234	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.87	1	2.4559	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	298	MT-ND4	1220	chrM:10979:+	MT-ND4L	5536	chrM:10627:+	INCL_NON_REF_SPLICE	YES	63	0	0.83	1	0.0244	2.4234	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.83	1	2.4478	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	297	MT-ND4	1170	chrM:10929:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	NO	45	0	0.87	1	0.0244	2.4152	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.87	1	2.4396	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	295	MT-ND4	1114	chrM:10873:+	MT-ND4L	5509	chrM:10600:+	INCL_NON_REF_SPLICE	YES	24	0	0.93	1	0.0244	2.399	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.93	1	2.4234	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	295	MT-ND4	1112	chrM:10871:+	MT-ND4L	5464	chrM:10555:+	INCL_NON_REF_SPLICE	YES	24	0	0.93	1	0.0244	2.399	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.93	1	2.4234	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	295	MT-ND4	1112	chrM:10871:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	24	0	0.93	1	0.0244	2.399	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.93	1	2.4234	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	293	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	36	0	0.89	1	0.0244	2.3827	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.89	1	2.4071	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	66	35	MT-ND4	1170	chrM:10929:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	45	1	0.69	0.99	0.5367	0.2846	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.69	0.99	0.8213	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	65	33	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.95	1	0.5286	0.2684	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.95	1	0.797	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TN	35	145	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2846	1.1792	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1623_LUNG	1	1	1.4638	FALSE	369	2501	205	193	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	6	260	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	21	0	0.93	1	0.0488	2.1143	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.93	1	2.1631	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	RPLP1--SUPT20H	66	15	RPLP1	1225	chr15:69745347:+	SUPT20H	34490	chr13:37586434:-	INCL_NON_REF_SPLICE	YES	3115	60	0.03	0.57	0.5367	0.122	RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,SUPT20H->SPT20_homolog,_SAGA_complex_component,chr13:37583449-37633850:-	NCIH1623_LUNG	0.03	0.57	0.6587	TRUE	0	0	0	1	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	260	MT-ND4	1081	chrM:10840:+	MT-ND4L	5526	chrM:10617:+	INCL_NON_REF_SPLICE	YES	19	0	0.93	1	0.0244	2.1143	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.93	1	2.1387	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	TIMM23--RP11-464F9.1	67	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	107	1	0.4	0.99	0.5448	0.0325	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1623_LUNG	0.4	0.99	0.5773	TRUE	519	3926	326	965	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	10	226	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	19	0	0.93	1	0.0813	1.8378	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.93	1	1.9191	FALSE	344	821	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	4	241	MT-ND4	1789	chrM:11548:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	9553	2	0.03	0.99	0.0325	1.9598	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.03	0.99	1.9923	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	8	214	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	24	2	0.9	0.99	0.0651	1.7403	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.9	0.99	1.8054	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TN	49	48	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3985	0.3903	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1623_LUNG	1	1	0.7888	FALSE	369	2501	205	193	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	57	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.4635	0.0651	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.97	1	0.5286	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	10	192	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	154	2	0.57	0.99	0.0813	1.5614	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.57	0.99	1.6427	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	5	209	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	24	2	0.9	0.99	0.0407	1.6996	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.9	0.99	1.7403	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	4	211	MT-ND4	1199	chrM:10958:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	56	2	0.79	0.99	0.0325	1.7159	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.79	0.99	1.7484	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	56	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	16720	4	0	0.93	0.4554	0.0081	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.93	0.4635	FALSE	230	193	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	4	199	MT-ND4	1062	chrM:10821:+	MT-ND4L	5516	chrM:10607:+	INCL_NON_REF_SPLICE	YES	16	0	0.93	1	0.0325	1.6183	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.93	1	1.6508	FALSE	344	821	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MYCBP2--N4BP2L2	49	12	MYCBP2	16359	chr13:77825286:-	N4BP2L2	113862	chr13:33018263:-	ONLY_REF_SPLICE	YES	4	7	0.94	0.9	0.3985	0.0976	{Klijn_CCL:Lung=1},MYCBP2->MYC_binding_protein_2,_E3_ubiquitin_protein_ligase,chr13:77618792-77901185:-,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	NCIH1623_LUNG	0.9	0.94	0.4961	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	192	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	141	2	0.58	0.99	0.0244	1.5614	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.58	0.99	1.5858	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TN	34	67	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2765	0.5448	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1623_LUNG	1	1	0.8213	FALSE	369	2501	205	193	0	FALSE	ACH-000744
NCIH1623_LUNG	RP11-123O10.4--GRIP1	46	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3741	0.0651	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1623_LUNG	1	1	0.4392	FALSE	416	2512	207	587	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	8	150	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	35	2	0.82	0.99	0.0651	1.2198	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.82	0.99	1.2849	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TN	3	170	MT-TA	1059	chrM:5597:-	MT-TN	4015	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	1.3825	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1623_LUNG	1	1	1.4069	FALSE	369	2501	205	193	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	163	MT-ND4	1170	chrM:10929:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	45	2	0.79	0.99	0.0244	1.3255	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.79	0.99	1.3499	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	40	2	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	12635	10427	0	0	0.3253	0.0163	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	0	0.3416	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	37	9	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22562	8	0	0.85	0.3009	0.0732	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.85	0.3741	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	UBXN7--DLG1	37	9	UBXN7	12632	chr3:196094899:-	DLG1	35559	chr3:196921460:-	ONLY_REF_SPLICE	YES	39	47	0.54	0.49	0.3009	0.0732	{Klijn_CCL:Lung=1},UBXN7->UBX_domain_protein_7,chr3:196074533-196159345:-,DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component	NCIH1623_LUNG	0.49	0.54	0.3741	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TN	15	96	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.122	0.7807	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1623_LUNG	1	1	0.9027	FALSE	369	2501	205	193	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TC--MT-TY	38	2	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.309	0.0163	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1623_LUNG	1	1	0.3253	FALSE	51	280	19	36	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TN	25	52	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2033	0.4229	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1623_LUNG	1	1	0.6262	FALSE	369	2501	205	193	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	11	107	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	9	11	0.93	0.91	0.0895	0.8701	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.91	0.93	0.9596	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	29	35	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12446	1	0.01	0.98	0.2358	0.2846	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.01	0.98	0.5204	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	8	116	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	16	81	0.89	0.6	0.0651	0.9433	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.6	0.89	1.0084	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	134	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	59	2	0.7	0.99	0.0244	1.0897	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.7	0.99	1.1141	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	4	126	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	5	0	0.96	1	0.0325	1.0246	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.96	1	1.0571	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	14	85	MT-ND4	1903	chrM:11662:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	YES	21170	1	0	0.99	0.1138	0.6912	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0	0.99	0.805	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	3	126	MT-CO3	1220	chrM:9426:+	MT-ATP6	4716	chrM:8458:+	INCL_NON_REF_SPLICE	NO	5	0	0.96	1	0.0244	1.0246	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.96	1	1.049	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	7	110	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	8	90	0.94	0.57	0.0569	0.8945	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.57	0.94	0.9514	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	25	35	MT-ND4	1447	chrM:11206:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	553	1	0.1	0.98	0.2033	0.2846	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.1	0.98	0.4879	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	18	62	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	17224	1	0	0.99	0.1464	0.5042	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0	0.99	0.6506	FALSE	328	800	43	304	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	33	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16731	8	0	0.81	0.2684	0.0081	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.81	0.2765	FALSE	230	198	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	3	117	MT-CO3	1283	chrM:9489:+	MT-ATP6	5119	chrM:8861:+	INCL_NON_REF_SPLICE	YES	11	23	0.92	0.84	0.0244	0.9515	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.84	0.92	0.9759	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	GRAMD4--GTSE1	31	4	GRAMD4	6846	chr22:47054204:+	GTSE1	27700	chr22:46704047:+	ONLY_REF_SPLICE	YES	12	72	0.74	0.33	0.2521	0.0325	{Klijn_CCL:Breast=1},GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+,GTSE1->G2_and_S-phase_expressed_1,chr22:46692638-46726707:+	NCIH1623_LUNG	0.33	0.74	0.2846	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	3	115	MT-CO3	1220	chrM:9426:+	MT-ATP6	5072	chrM:8814:+	INCL_NON_REF_SPLICE	YES	5	27	0.96	0.81	0.0244	0.9352	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.81	0.96	0.9596	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	4	109	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	15	12	0.88	0.9	0.0325	0.8864	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.88	0.9	0.9189	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	5	105	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	5	36	0.96	0.75	0.0407	0.8539	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.75	0.96	0.8946	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	5	105	MT-ND4	1112	chrM:10871:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	24	2	0.82	0.98	0.0407	0.8539	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.82	0.98	0.8946	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	3	107	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	9	11	0.92	0.91	0.0244	0.8701	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.91	0.92	0.8945	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	5	99	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	5	9	0.95	0.92	0.0407	0.8051	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.92	0.95	0.8458	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	3	105	MT-CO3	1159	chrM:9365:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	13	7	0.89	0.94	0.0244	0.8539	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.89	0.94	0.8783	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	105	MT-ND4	1038	chrM:10797:+	MT-ND4L	5511	chrM:10602:+	INCL_NON_REF_SPLICE	YES	11	0	0.91	1	0.0244	0.8539	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.91	1	0.8783	FALSE	344	821	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	CRKL--SNAP29	28	4	CRKL	3286	chr22:21288532:+	SNAP29	14689	chr22:21235337:+	ONLY_REF_SPLICE	YES	58	56	0.36	0.36	0.2277	0.0325	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[26208],CRKL->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:21271714-21308037:+,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog-like,SNAP29->chr22:21213271-21245506:+,synaptosome_associated_protein_29kDa	NCIH1623_LUNG	0.36	0.36	0.2602	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	12	67	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	8	0	0.91	1	0.0976	0.5448	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.91	1	0.6424	FALSE	344	821	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	17	47	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.93	1	0.1382	0.3822	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.93	1	0.5204	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	SRRM2-AS1--TCEB2	27	6	SRRM2-AS1	5671	chr16:2793553:-	TCEB2	16418	chr16:2822103:-	ONLY_REF_SPLICE	YES	1	284	0.97	0.1	0.2196	0.0488	LOCAL_REARRANGEMENT:-:[18814],SRRM2-AS1->SRRM2_antisense_RNA_1,chr16:2787077-2802601:-,TCEB2->chr16:2821415-2827298:-,transcription_elongation_factor_B_subunit_2	NCIH1623_LUNG	0.1	0.97	0.2684	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	19	35	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	767	1	0.07	0.98	0.1545	0.2846	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.07	0.98	0.4391	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	20	31	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.1626	0.2521	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.98	1	0.4147	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	6	85	MT-CO3	1061	chrM:9267:+	MT-ATP6	5343	chrM:9085:+	INCL_NON_REF_SPLICE	YES	2	4	0.98	0.96	0.0488	0.6912	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.96	0.98	0.74	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND1--MT-TL1	6	84	MT-ND1	1267	chrM:3573:+	MT-TL1	4931	chrM:3204:+	INCL_NON_REF_SPLICE	YES	18	0	0.83	1	0.0488	0.6831	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH1623_LUNG	0.83	1	0.7319	FALSE	210	95	5	49	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	26	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	9	0	0.75	1	0.2114	0.0081	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.75	1	0.2195	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TC	24	9	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1952	0.0732	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1623_LUNG	1	1	0.2684	FALSE	462	80	0	856	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TN	8	72	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0.5855	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1623_LUNG	1	1	0.6506	FALSE	369	2501	205	193	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TN	26	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2114	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1623_LUNG	1	1	0.2114	FALSE	369	2501	205	193	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	4	87	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	9	0	0.91	1	0.0325	0.7075	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.91	1	0.74	FALSE	344	821	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TC--MT-TY	6	79	MT-TC	1061	chrM:5766:-	MT-TY	4075	chrM:5883:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0.6424	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1623_LUNG	1	1	0.6912	FALSE	51	280	19	36	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	21	16	MT-ND4	2283	chrM:12042:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	73	73	0.34	0.34	0.1708	0.1301	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0.34	0.34	0.3009	FALSE	213	207	15	279	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TC	25	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2033	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1623_LUNG	1	1	0.2033	FALSE	462	80	0	856	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	84	MT-ND4	1028	chrM:10787:+	MT-ND4L	5504	chrM:10595:+	INCL_NON_REF_SPLICE	YES	9	0	0.91	1	0.0244	0.6831	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.91	1	0.7075	FALSE	344	821	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	15	35	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	61	1	0.45	0.98	0.122	0.2846	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.45	0.98	0.4066	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TN	8	60	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0.4879	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1623_LUNG	1	1	0.553	FALSE	369	2501	205	193	0	FALSE	ACH-000744
NCIH1623_LUNG	SCRN3--HYDIN	20	12	SCRN3	8341	chr2:175274953:+	HYDIN	51889	chr16:71026113:-	ONLY_REF_SPLICE	YES	35	0	0.48	1	0.1626	0.0976	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1623_LUNG	0.48	1	0.2602	TRUE	0	0	0	3	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	22	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1789	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	1	1	0.1789	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TN	22	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1789	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1623_LUNG	1	1	0.1789	FALSE	369	2501	205	193	0	FALSE	ACH-000744
NCIH1623_LUNG	LPCAT2--COQ9	19	10	LPCAT2	1355	chr16:55543264:+	COQ9	27172	chr16:57484952:+	ONLY_REF_SPLICE	YES	58	31	0.33	0.48	0.1545	0.0813	LPCAT2->chr16:55542910-55620582:+,lysophosphatidylcholine_acyltransferase_2,COQ9->chr16:57481337-57495187:+,coenzyme_Q9	NCIH1623_LUNG	0.33	0.48	0.2358	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	3	74	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	NO	5	1	0.94	0.99	0.0244	0.6018	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.94	0.99	0.6262	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	3	72	MT-CO3	1039	chrM:9245:+	MT-ATP6	5090	chrM:8832:+	INCL_NON_REF_SPLICE	YES	0	34	1	0.69	0.0244	0.5855	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.69	1	0.6099	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	4	68	MT-CO3	1036	chrM:9242:+	MT-ATP6	5156	chrM:8898:+	INCL_NON_REF_SPLICE	YES	0	74	1	0.49	0.0325	0.553	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.49	1	0.5855	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TN	21	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1708	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1623_LUNG	1	1	0.1708	FALSE	369	2501	205	193	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	14	27	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	52	0	0.44	1	0.1138	0.2196	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.44	1	0.3334	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	12	35	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8609	1	0.01	0.98	0.0976	0.2846	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.01	0.98	0.3822	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TL1--MT-RNR2	5	63	MT-TL1	1086	chrM:3315:+	MT-RNR2	5568	chrM:3163:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.97	0.0407	0.5123	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0.97	1	0.553	FALSE	7	521	16	32	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	5	62	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	8609	1	0.01	0.99	0.0407	0.5042	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.01	0.99	0.5449	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	NDUFS1--GPR1	16	17	NDUFS1	2585	chr2:207018342:-	GPR1	34934	chr2:207041999:-	ONLY_REF_SPLICE	YES	103	9	0.24	0.79	0.1301	0.1382	LOCAL_REARRANGEMENT:-:[15713],NDUFS1->NADH:ubiquinone_oxidoreductase_core_subunit_S1,chr2:206979541-207024327:-,GPR1->G_protein-coupled_receptor_1,chr2:207040040-207082771:-	NCIH1623_LUNG	0.24	0.79	0.2683	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	3	68	MT-CO3	1033	chrM:9239:+	MT-ATP6	4768	chrM:8510:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0.553	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	1	1	0.5774	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	11	35	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	59	1	0.44	0.98	0.0895	0.2846	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.44	0.98	0.3741	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	RP11-96H19.1--RP11-446N19.1	19	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.92	1	0.1545	0.0244	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1623_LUNG	0.92	1	0.1789	FALSE	515	4851	409	746	0	FALSE	ACH-000744
NCIH1623_LUNG	SCRN3--HYDIN	18	6	SCRN3	8341	chr2:175274953:+	HYDIN	53782	chr16:71022415:-	ONLY_REF_SPLICE	YES	35	1	0.41	0.96	0.1464	0.0488	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1623_LUNG	0.41	0.96	0.1952	TRUE	0	0	0	3	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	4	61	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	133	1	0.33	0.98	0.0325	0.4961	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.33	0.98	0.5286	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TN	19	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1545	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1623_LUNG	1	1	0.1545	FALSE	369	2501	205	193	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND1--MT-TL1	3	63	MT-ND1	1155	chrM:3461:+	MT-TL1	4983	chrM:3256:+	INCL_NON_REF_SPLICE	YES	17	0	0.8	1	0.0244	0.5123	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH1623_LUNG	0.8	1	0.5367	FALSE	210	95	5	49	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	7	47	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.93	1	0.0569	0.3822	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.93	1	0.4391	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND1--MT-TL1	4	58	MT-ND1	1094	chrM:3400:+	MT-TL1	4988	chrM:3261:+	INCL_NON_REF_SPLICE	YES	6	0	0.91	1	0.0325	0.4717	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH1623_LUNG	0.91	1	0.5042	FALSE	210	95	5	49	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	62	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	14174	1	0	0.98	0.0244	0.5042	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0	0.98	0.5286	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND1--MT-TL1	3	61	MT-ND1	1090	chrM:3396:+	MT-TL1	4984	chrM:3257:+	INCL_NON_REF_SPLICE	YES	6	0	0.91	1	0.0244	0.4961	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH1623_LUNG	0.91	1	0.5205	FALSE	210	95	5	49	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	60	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	43	1	0.59	0.98	0.0244	0.4879	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.59	0.98	0.5123	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TL1--MT-RNR2	18	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1464	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	1	1	0.1464	FALSE	7	521	16	32	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	10	29	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	9	2	0.81	0.95	0.0813	0.2358	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.81	0.95	0.3171	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	15	9	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	21973	0	0	1	0.122	0.0732	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.1952	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	NDUFS1--GPR1	16	5	NDUFS1	1263	chr2:207024065:-	GPR1	34934	chr2:207041999:-	ONLY_REF_SPLICE	YES	37	9	0.36	0.7	0.1301	0.0407	LOCAL_REARRANGEMENT:-:[15713],NDUFS1->NADH:ubiquinone_oxidoreductase_core_subunit_S1,chr2:206979541-207024327:-,GPR1->G_protein-coupled_receptor_1,chr2:207040040-207082771:-	NCIH1623_LUNG	0.36	0.7	0.1708	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	8	35	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	43	1	0.5	0.98	0.0651	0.2846	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.5	0.98	0.3497	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	6	42	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	15	2	0.76	0.96	0.0488	0.3415	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.76	0.96	0.3903	FALSE	344	821	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	14	9	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21745	73	0	0.24	0.1138	0.0732	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.24	0.187	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	12	16	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	133	0	0.17	1	0.0976	0.1301	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.17	1	0.2277	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	5	43	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.94	0.0407	0.3497	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.94	1	0.3904	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	4	47	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	22	1	0.7	0.98	0.0325	0.3822	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.7	0.98	0.4147	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	6	39	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	8	0	0.85	1	0.0488	0.3172	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.85	1	0.366	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	4	46	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.93	1	0.0325	0.3741	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.93	1	0.4066	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	VWA8--ARHGEF7	15	1	VWA8	18626	chr13:42361573:-	ARHGEF7	62756	chr13:111857636:+	ONLY_REF_SPLICE	YES	13	16	0.55	0.5	0.122	0.0081	VWA8->chr13:42140973-42535256:-,von_Willebrand_factor_A_domain_containing_8,ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+	NCIH1623_LUNG	0.5	0.55	0.1301	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	4	44	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	11	1	0.81	0.0325	0.3578	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.81	1	0.3903	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	5	40	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	49	1	0.48	0.98	0.0407	0.3253	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.48	0.98	0.366	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	RP11-96H19.1--RP11-446N19.1	13	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.1057	0.0569	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1623_LUNG	0.91	1	0.1626	FALSE	407	2205	196	549	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	14	2	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	12100	10385	0	0	0.1138	0.0163	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	0	0.1301	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	8	26	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	4	2	0.89	0.94	0.0651	0.2114	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.89	0.94	0.2765	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	SLC2A1--TSPAN1	14	2	SLC2A1	3563	chr1:43408897:-	TSPAN1	17439	chr1:46649863:+	ONLY_REF_SPLICE	YES	233	141	0.06	0.1	0.1138	0.0163	{Klijn_CCL:Lung=1},SLC2A1->chr1:43391052-43424530:-,solute_carrier_family_2_member_1,TSPAN1->Oncogene{Bushman},chr1:46640745-46651630:+,tetraspanin_1	NCIH1623_LUNG	0.06	0.1	0.1301	TRUE	0	0	0	1	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	5	37	MT-ND6	1199	chrM:14475:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.0407	0.3009	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.91	1	0.3416	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	14	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1138	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	1	1	0.1138	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	10	16	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3399	73	0.01	0.26	0.0813	0.1301	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0.01	0.26	0.2114	FALSE	216	209	16	281	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	9	20	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0732	0.1626	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.97	1	0.2358	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	5	33	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.0407	0.2684	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.9	1	0.3091	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	HSPBP1--GRK5	13	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1057	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH1623_LUNG	1	1	0.1057	TRUE	1	39	0	134	39	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	12	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19277	8	0	0.65	0.0976	0.0244	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.65	0.122	FALSE	231	205	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	PPP1R12A--RP1-78O14.1	3	38	PPP1R12A	1766	chr12:80328475:-	RP1-78O14.1	41351	chr12:79787702:-	INCL_NON_REF_SPLICE	YES	56	0	0.42	1	0.0244	0.309	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,RP1-78O14.1->chr12:79734985-79897176:-	NCIH1623_LUNG	0.42	1	0.3334	TRUE	0	0	0	2	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ND1--MT-TL1	7	21	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	11	0	0.72	1	0.0569	0.1708	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH1623_LUNG	0.72	1	0.2277	FALSE	210	95	5	49	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TC--MT-TY	4	32	MT-TC	1063	chrM:5764:-	MT-TY	4094	chrM:5864:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0.2602	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1623_LUNG	1	1	0.2927	FALSE	51	280	19	36	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	35	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	36	1	0.51	0.97	0.0244	0.2846	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.51	0.97	0.309	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	35	MT-ND4	1998	chrM:11757:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	21103	1	0	0.97	0.0244	0.2846	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0	0.97	0.309	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	35	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	113	1	0.25	0.97	0.0244	0.2846	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.25	0.97	0.309	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	35	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	126	1	0.23	0.97	0.0244	0.2846	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.23	0.97	0.309	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND1--MT-TL1	9	10	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	5	0	0.79	1	0.0732	0.0813	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH1623_LUNG	0.79	1	0.1545	FALSE	210	95	5	49	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	3	34	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	152	0	0.2	1	0.0244	0.2765	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.2	1	0.3009	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	11	1	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	12081	10414	0	0	0.0895	0.0081	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	0	0.0976	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	9	8	MT-ND4	1566	chrM:11325:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	24542	2	0	0.89	0.0732	0.0651	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.89	0.1383	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	7	16	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	59	0	0.28	1	0.0569	0.1301	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.28	1	0.187	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	10	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.93	0.0813	0.0325	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.93	1	0.1138	FALSE	344	821	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	3	31	MT-ND6	1053	chrM:14621:-	MT-TE	4526	chrM:14742:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0244	0.2521	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.94	1	0.2765	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	RP4-565E6.1--HYDIN	10	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.0813	0.0244	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1623_LUNG	0.87	1	0.1057	TRUE	456	1387	91	133	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	5	22	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1785	0	0.01	1	0.0407	0.1789	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0.01	1	0.2196	FALSE	216	209	16	281	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	5	22	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	7463	0	0	1	0.0407	0.1789	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.2196	FALSE	222	212	16	282	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	5	22	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0407	0.1789	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.93	1	0.2196	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	PAPL--EIF3K	10	2	PAPL	6474	chr19:39592177:+	EIF3K	14287	chr19:39110977:+	ONLY_REF_SPLICE	YES	0	685	1	0.02	0.0813	0.0163	PAPL->chr19:39574553-39602133:+,EIF3K->chr19:39109735-39127595:+,eukaryotic_translation_initiation_factor_3_subunit_K	NCIH1623_LUNG	0.02	1	0.0976	TRUE	0	0	0	1	0	FALSE	ACH-000744
NCIH1623_LUNG	SHANK3--PPP6R2	10	2	SHANK3	20268	chr22:51160865:+	PPP6R2	37643	chr22:50857778:+	ONLY_REF_SPLICE	YES	8	77	0.6	0.13	0.0813	0.0163	{Klijn_CCL:Lung=1},SHANK3->SH3_and_multiple_ankyrin_repeat_domains_3,chr22:51112843-51171726:+,PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2	NCIH1623_LUNG	0.13	0.6	0.0976	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	10	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16552	8	0	0.58	0.0813	0.0081	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.58	0.0894	FALSE	230	193	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	10	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16808	73	0	0.13	0.0813	0.0081	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.13	0.0894	FALSE	230	198	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	6	16	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	53	0	0.29	1	0.0488	0.1301	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.29	1	0.1789	FALSE	344	826	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	10	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0813	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	1	1	0.0813	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TL1--MT-RNR2	8	8	MT-TL1	1104	chrM:3333:+	MT-RNR2	5603	chrM:3198:+	INCL_NON_REF_SPLICE	NO	0	3	1	0.84	0.0651	0.0651	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0.84	1	0.1302	FALSE	7	521	16	32	0	FALSE	ACH-000744
NCIH1623_LUNG	GJB2--RP11-132M7.3	9	3	GJB2	2767	chr13:20763269:-	RP11-132M7.3	10077	chr6:85404628:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0732	0.0244	GJB2->chr13:20761609-20767037:-,gap_junction_protein_beta_2,RP11-132M7.3->chr6:85399143-85419252:+	NCIH1623_LUNG	1	1	0.0976	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	9	3	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	12635	0	0	1	0.0732	0.0244	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	1	0.0976	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	SLC2A1--TSPAN1	9	3	SLC2A1	3563	chr1:43408897:-	TSPAN1	15042	chr1:46646198:+	ONLY_REF_SPLICE	YES	233	1	0.05	0.92	0.0732	0.0244	{Klijn_CCL:Lung=1},SLC2A1->chr1:43391052-43424530:-,solute_carrier_family_2_member_1,TSPAN1->Oncogene{Bushman},chr1:46640745-46651630:+,tetraspanin_1	NCIH1623_LUNG	0.05	0.92	0.0976	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	CTD-2008L17.1--RP11-456O19.2	9	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	4	0	0.73	1	0.0732	0.0163	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1623_LUNG	0.73	1	0.0895	FALSE	33	240	4	98	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	9	2	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	11088	0	0	1	0.0732	0.0163	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	1	0.0895	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	4	22	MT-ND4	2301	chrM:12060:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	17	0	0.6	1	0.0325	0.1789	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0.6	1	0.2114	FALSE	209	205	15	279	0	FALSE	ACH-000744
NCIH1623_LUNG	ARNT--CDC42SE1	9	1	ARNT	1226	chr1:150849019:-	CDC42SE1	31000	chr1:151039810:-	ONLY_REF_SPLICE	YES	4	0	0.71	1	0.0732	0.0081	ARNT->Oncogene{Bushman},aryl_hydrocarbon_receptor_nuclear_translocator,chr1:150782181-150849244:-,CDC42SE1->CDC42_small_effector_1,chr1:151023447-151042801:-	NCIH1623_LUNG	0.71	1	0.0813	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	8	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	22842	0	0	1	0.0651	0.0407	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.1058	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	CSAD--RP11-1136G11.6	9	0	CSAD	8127	chr12:53563856:-	RP11-1136G11.6	19169	chr12:53548112:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0732	0	LOCAL_INVERSION:-:+:[3179],CSAD->chr12:53551447-53575135:-,cysteine_sulfinic_acid_decarboxylase,RP11-1136G11.6->chr12:53547056-53548268:+	NCIH1623_LUNG	1	1	0.0732	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	6	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20489	73	0	0.2	0.0488	0.0976	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.2	0.1464	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	9	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0732	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	1	1	0.0732	FALSE	344	821	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	9	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0732	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	1	1	0.0732	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	9	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0732	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	1	1	0.0732	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TC	5	16	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0.1301	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1623_LUNG	1	1	0.1708	FALSE	462	80	0	856	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TC--MT-TY	9	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0732	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1623_LUNG	1	1	0.0732	FALSE	51	280	19	36	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	6	11	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	22280	0	0	1	0.0488	0.0895	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.1383	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	TARS2--RPRD2	7	7	TARS2	2677	chr1:150461563:+	RPRD2	30616	chr1:150443037:+	ONLY_REF_SPLICE	YES	80	138	0.15	0.09	0.0569	0.0569	LOCAL_REARRANGEMENT:+:[10845],TARS2->chr1:150459887-150480078:+,threonyl-tRNA_synthetase_2,_mitochondrial_(putative),RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2	NCIH1623_LUNG	0.09	0.15	0.1138	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	8	2	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	10627	0	0	1	0.0651	0.0163	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	1	0.0814	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	6	10	MT-ND6	1029	chrM:14645:-	MT-TE	4495	chrM:14773:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0488	0.0813	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.94	1	0.1301	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	4	18	MT-ND6	1261	chrM:14413:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.0325	0.1464	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.81	1	0.1789	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TC	6	10	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0.0813	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1623_LUNG	1	1	0.1301	FALSE	462	80	0	856	0	FALSE	ACH-000744
NCIH1623_LUNG	RP11-123O10.4--GRIP1	6	10	RP11-123O10.4	2167	chr12:67285681:-	GRIP1	11081	chr12:66990707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0.0813	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1623_LUNG	1	1	0.1301	FALSE	0	5	0	12	0	FALSE	ACH-000744
NCIH1623_LUNG	ARNT--CDC42SE1	8	1	ARNT	1226	chr1:150849019:-	CDC42SE1	32203	chr1:151032249:-	ONLY_REF_SPLICE	YES	4	3	0.69	0.75	0.0651	0.0081	ARNT->Oncogene{Bushman},aryl_hydrocarbon_receptor_nuclear_translocator,chr1:150782181-150849244:-,CDC42SE1->CDC42_small_effector_1,chr1:151023447-151042801:-	NCIH1623_LUNG	0.69	0.75	0.0732	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	8	1	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	10	0	0.47	1	0.0651	0.0081	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.47	1	0.0732	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND1--MT-TL1	8	1	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	6	0	0.6	1	0.0651	0.0081	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH1623_LUNG	0.6	1	0.0732	FALSE	210	95	5	49	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	8	1	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0651	0.0081	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.82	1	0.0732	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	3	21	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	138	0	0.15	1	0.0244	0.1708	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	0.15	1	0.1952	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	SUPT20H--RPLP1	5	13	SUPT20H	24627	chr13:37593479:-	RPLP1	34062	chr15:69745181:+	INCL_NON_REF_SPLICE	YES	37	0	0.33	1	0.0407	0.1057	SUPT20H->SPT20_homolog,_SAGA_complex_component,chr13:37583449-37633850:-,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	NCIH1623_LUNG	0.33	1	0.1464	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	4	16	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5	8	0.8	0.71	0.0325	0.1301	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0.71	0.8	0.1626	FALSE	209	205	15	279	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	4	16	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	133	0	0.13	1	0.0325	0.1301	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.13	1	0.1626	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	8	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	1	1	0.0651	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TN	8	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1623_LUNG	1	1	0.0651	FALSE	369	2501	205	193	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	3	19	MT-ND4	2170	chrM:11929:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	11210	0	0	1	0.0244	0.1545	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.1789	FALSE	231	215	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	6	7	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	25573	73	0	0.15	0.0488	0.0569	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.15	0.1057	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	6	7	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	24653	73	0	0.15	0.0488	0.0569	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.15	0.1057	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	6	7	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	22365	1707	0	0.01	0.0488	0.0569	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.01	0.1057	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	6	6	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	22930	0	0	1	0.0488	0.0488	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.0976	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	7	2	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	17140	0	0	1	0.0569	0.0163	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.0732	FALSE	231	204	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TC	5	10	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0.0813	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1623_LUNG	1	1	0.122	FALSE	462	80	0	856	0	FALSE	ACH-000744
NCIH1623_LUNG	SCRN3--HYDIN	6	6	SCRN3	8341	chr2:175274953:+	HYDIN	52703	chr16:71025299:-	ONLY_REF_SPLICE	YES	35	0	0.26	1	0.0488	0.0488	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1623_LUNG	0.26	1	0.0976	TRUE	0	0	0	3	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	6	5	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	23127	73	0	0.13	0.0488	0.0407	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.13	0.0895	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	7	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	NO	16720	0	0	1	0.0569	0.0081	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.065	FALSE	230	193	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	5	9	MT-ND4	1779	chrM:11538:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22511	73	0	0.16	0.0407	0.0732	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.16	0.1139	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	DDX55--SNRNP35	7	0	DDX55	10363	chr12:124101150:+	SNRNP35	24316	chr12:123955639:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0569	0	DDX55->DEAD-box_helicase_55,chr12:124086624-124105488:+,SNRNP35->chr12:123942188-123957701:+,small_nuclear_ribonucleoprotein_U11/U12_subunit_35	NCIH1623_LUNG	1	1	0.0569	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	5	8	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	9	0	0.59	1	0.0407	0.0651	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.59	1	0.1058	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND1--MT-TL1	7	0	MT-ND1	1053	chrM:3359:+	MT-TL1	5016	chrM:3289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0569	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH1623_LUNG	1	1	0.0569	FALSE	210	95	5	49	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND3--MT-TG	7	0	MT-ND3	1026	chrM:10084:+	MT-TG	4396	chrM:10040:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0569	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	NCIH1623_LUNG	1	1	0.0569	FALSE	97	9	0	14	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	16	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	64	0	0.23	1	0.0244	0.1301	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.23	1	0.1545	FALSE	344	827	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	7	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0569	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	1	1	0.0569	FALSE	344	821	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TC	4	12	MT-TA	1063	chrM:5593:-	MT-TC	4102	chrM:5794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0.0976	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1623_LUNG	1	1	0.1301	FALSE	462	80	0	856	0	FALSE	ACH-000744
NCIH1623_LUNG	PCBP2--CSAD	6	4	PCBP2	21088	chr12:53873315:+	CSAD	36105	chr12:53555173:-	INCL_NON_REF_SPLICE	YES	598	37	0.02	0.21	0.0488	0.0325	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CSAD->chr12:53551447-53575135:-,cysteine_sulfinic_acid_decarboxylase	NCIH1623_LUNG	0.02	0.21	0.0813	TRUE	0	0	0	1	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	6	3	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	13	0	0.41	1	0.0488	0.0244	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.41	1	0.0732	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	6	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	21745	2055	0	0	0.0488	0.0244	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0	0.0732	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	5	7	MT-ND4	1528	chrM:11287:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	26493	8	0	0.6	0.0407	0.0569	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.6	0.0976	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	4	11	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	22627	0	0	1	0.0325	0.0895	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.122	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TC	4	11	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0.0895	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1623_LUNG	1	1	0.122	FALSE	462	80	0	856	0	FALSE	ACH-000744
NCIH1623_LUNG	RBM47--APBB2	2	19	RBM47	2480	chr4:40631413:-	APBB2	46528	chr4:40832594:-	ONLY_REF_SPLICE	YES	101	11	0.17	0.66	0.0163	0.1545	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	NCIH1623_LUNG	0.17	0.66	0.1708	TRUE	0	2	0	1	2	TRUE	ACH-000744
NCIH1623_LUNG	RP11-123O10.4--GRIP1	6	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0488	0.0244	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1623_LUNG	1	1	0.0732	FALSE	93	270	15	244	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	5	6	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	22450	0	0	1	0.0407	0.0488	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.0895	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	SLC2A1--TSPAN1	6	2	SLC2A1	3563	chr1:43408897:-	TSPAN1	15616	chr1:46646772:+	ONLY_REF_SPLICE	YES	233	128	0.03	0.06	0.0488	0.0163	{Klijn_CCL:Lung=1},SLC2A1->chr1:43391052-43424530:-,solute_carrier_family_2_member_1,TSPAN1->Oncogene{Bushman},chr1:46640745-46651630:+,tetraspanin_1	NCIH1623_LUNG	0.03	0.06	0.0651	TRUE	0	0	0	1	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	5	5	MT-ATP6	1555	chrM:9081:+	MT-RNR2	5408	chrM:2397:+	INCL_NON_REF_SPLICE	YES	3688	12873	0	0	0.0407	0.0407	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	0	0.0814	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	6	1	MT-ATP6	1110	chrM:8636:+	MT-RNR2	5247	chrM:2236:+	INCL_NON_REF_SPLICE	YES	10608	10484	0	0	0.0488	0.0081	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	0	0.0569	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	5	5	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	25217	901	0	0.01	0.0407	0.0407	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.01	0.0814	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TC	4	9	MT-TA	1051	chrM:5605:-	MT-TC	4078	chrM:5818:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0.0732	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1623_LUNG	1	1	0.1057	FALSE	462	80	0	856	0	FALSE	ACH-000744
NCIH1623_LUNG	PDLIM5--SMARCAD1	6	1	PDLIM5	6235	chr4:95445026:+	SMARCAD1	45514	chr4:95170805:+	ONLY_REF_SPLICE	YES	31	14	0.18	0.33	0.0488	0.0081	{Klijn_CCL:Lung=1},PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+,SMARCAD1->SWI/SNF-related,_matrix-associated_actin-dependent_regulator_of_chromatin,_subfamily_a,_containing_DEAD/H_box_1,chr4:95128762-95212443:+	NCIH1623_LUNG	0.18	0.33	0.0569	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	3	12	MT-ND4	1998	chrM:11757:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	21092	8	0	0.65	0.0244	0.0976	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.65	0.122	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	4	8	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	21939	948	0	0.01	0.0325	0.0651	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.01	0.0976	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	6	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	1	1	0.0488	FALSE	344	821	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	1	1	0.0488	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	1	1	0.0488	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TC--MT-TY	6	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1623_LUNG	1	1	0.0488	FALSE	51	280	19	36	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	4	7	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	NO	22419	1085	0	0.01	0.0325	0.0569	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.01	0.0894	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	5	2	MT-ATP6	1158	chrM:8684:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	13052	10486	0	0	0.0407	0.0163	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	0	0.057	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	22215	0	0	1	0.0244	0.0813	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.1057	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	21624	0	0	1	0.0244	0.0813	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.1057	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TC	4	6	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0.0488	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1623_LUNG	1	1	0.0813	FALSE	462	80	0	856	0	FALSE	ACH-000744
NCIH1623_LUNG	PAPL--EIF3K	5	2	PAPL	6474	chr19:39592177:+	EIF3K	13105	chr19:39109786:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0.0163	PAPL->chr19:39574553-39602133:+,EIF3K->chr19:39109735-39127595:+,eukaryotic_translation_initiation_factor_3_subunit_K	NCIH1623_LUNG	1	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	SCEL--FAM194B	5	2	SCEL	5137	chr13:78138034:+	FAM194B	44108	chr13:46142586:-	ONLY_REF_SPLICE	YES	12	0	0.37	1	0.0407	0.0163	SCEL->chr13:78109809-78219398:+,sciellin,FAM194B->chr13:46108657-46189874:-	NCIH1623_LUNG	0.37	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	9628	0	0	1	0.0407	0.0081	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	1	0.0488	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	12081	10385	0	0	0.0407	0.0081	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	0	0.0488	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	3	9	MT-ATP6	1548	chrM:9074:+	MT-RNR2	5251	chrM:2240:+	INCL_NON_REF_SPLICE	NO	4145	10435	0	0	0.0244	0.0732	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	0	0.0976	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	3	9	MT-ATP6	1516	chrM:9042:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	NO	6274	10266	0	0	0.0244	0.0732	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	0	0.0976	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	5	1	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	14	0	0.3	1	0.0407	0.0081	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.3	1	0.0488	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	5	1	MT-CO3	1032	chrM:9238:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.75	0.0407	0.0081	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.75	1	0.0488	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	4	5	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	22791	0	0	1	0.0325	0.0407	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.0732	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	3	9	MT-ND4	1759	chrM:11518:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	22047	0	0	1	0.0244	0.0732	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.0976	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TC--MT-TY	3	9	MT-TC	1065	chrM:5762:-	MT-TY	4101	chrM:5857:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0.0732	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1623_LUNG	1	1	0.0976	FALSE	51	280	19	36	0	FALSE	ACH-000744
NCIH1623_LUNG	NBEA--ALOX5AP	5	1	NBEA	35142	chr13:35782991:+	ALOX5AP	70038	chr13:31309688:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0407	0.0081	NBEA->chr13:35516424-36247159:+,neurobeachin,ALOX5AP->arachidonate_5-lipoxygenase_activating_protein,chr13:31309645-31338556:+	NCIH1623_LUNG	0.86	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1111	chrM:8637:+	MT-RNR2	5402	chrM:2391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	1	1	0.0407	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5571	chrM:8558:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	1	1	0.0407	FALSE	231	204	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	1	1	0.0407	FALSE	344	821	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	4	3	MT-ND4	1285	chrM:11044:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19367	8	0	0.47	0.0325	0.0244	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.47	0.0569	FALSE	231	205	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	23127	0	0	1	0.0244	0.0488	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.0732	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	16686	0	0	1	0.0325	0.0163	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.0488	FALSE	230	197	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	CPS1--AC007970.1	4	1	CPS1	26121	chr2:211481265:+	AC007970.1	57063	chr2:211325199:+	ONLY_REF_SPLICE	YES	1690	0	0	1	0.0325	0.0081	LOCAL_REARRANGEMENT:+:[8436],CPS1->carbamoyl-phosphate_synthase_1,chr2:211342406-211543831:+,AC007970.1->chr2:211189483-211333970:+	NCIH1623_LUNG	0	1	0.0406	FALSE	0	0	0	1	0	FALSE	ACH-000744
NCIH1623_LUNG	FTH1--ACTB	4	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	3200	15	0	0.25	0.0325	0.0081	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH1623_LUNG	0	0.25	0.0406	FALSE	1	0	0	97	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	4	1	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	15	0	0.25	1	0.0325	0.0081	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.25	1	0.0406	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	DBP--RASIP1	4	0	DBP	7447	chr19:49134249:-	RASIP1	12789	chr19:49242599:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:-:[83149],DBP->D-box_binding_PAR_bZIP_transcription_factor,chr19:49133287-49140695:-,RASIP1->Ras_interacting_protein_1,chr19:49223844-49243978:-	NCIH1623_LUNG	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	3	4	MT-ATP6	1555	chrM:9081:+	MT-RNR2	5445	chrM:2434:+	INCL_NON_REF_SPLICE	YES	3688	12514	0	0	0.0244	0.0325	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	0	0.0569	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	1	1	0.0325	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP8--MT-ND2	4	0	MT-ATP8	1070	chrM:8435:+	MT-ND2	4956	chrM:5218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:+:[2855],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1623_LUNG	1	1	0.0325	FALSE	26	2	1	4	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	1	1	0.0325	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	1	1	0.0325	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	20774	73	0	0.09	0.0244	0.0325	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.09	0.0569	FALSE	231	205	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	1	1	0.0325	FALSE	231	205	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	1	1	0.0325	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1027	chrM:14647:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1623_LUNG	1	1	0.0325	FALSE	499	1288	110	792	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TA--MT-TN	4	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1623_LUNG	1	1	0.0325	FALSE	369	2501	205	193	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-TC--MT-TY	4	0	MT-TC	1009	chrM:5818:-	MT-TY	4068	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1623_LUNG	1	1	0.0325	FALSE	51	280	19	36	0	FALSE	ACH-000744
NCIH1623_LUNG	MYCBP2--N4BP2L2	1	12	MYCBP2	16359	chr13:77825286:-	N4BP2L2	112740	chr13:33020617:-	ONLY_REF_SPLICE	YES	4	8	0.76	0.62	0.0081	0.0976	{Klijn_CCL:Lung=1},MYCBP2->MYC_binding_protein_2,_E3_ubiquitin_protein_ligase,chr13:77618792-77901185:-,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	NCIH1623_LUNG	0.62	0.76	0.1057	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	3	3	MT-CO3	1132	chrM:9338:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	7	0	0.46	1	0.0244	0.0244	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.46	1	0.0488	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-CO3--MT-ATP6	3	3	MT-CO3	1263	chrM:9469:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	9	0	0.4	1	0.0244	0.0244	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1623_LUNG	0.4	1	0.0488	FALSE	189	492	56	216	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1139	chrM:8665:+	MT-RNR2	4749	chrM:1738:+	INCL_NON_REF_SPLICE	YES	11886	0	0	1	0.0244	0.0163	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	1	0.0407	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1180	chrM:10939:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	14579	0	0	1	0.0244	0.0163	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.0407	FALSE	230	193	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1572	chrM:11331:+	MT-ATP8	5534	chrM:8521:+	INCL_NON_REF_SPLICE	NO	24038	2081	0	0	0.0244	0.0163	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0	0.0407	FALSE	231	217	16	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	NO	16720	0	0	1	0.0244	0.0163	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	1	0.0407	FALSE	230	193	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	GJB2--RP11-132M7.3	3	1	GJB2	2767	chr13:20763269:-	RP11-132M7.3	14955	chr6:85418986:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.8	0.0244	0.0081	GJB2->chr13:20761609-20767037:-,gap_junction_protein_beta_2,RP11-132M7.3->chr6:85399143-85419252:+	NCIH1623_LUNG	0.8	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1115	chrM:8641:+	MT-RNR2	5254	chrM:2243:+	INCL_NON_REF_SPLICE	NO	10627	10221	0	0	0.0244	0.0081	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	0	0.0325	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	10890	10502	0	0	0.0244	0.0081	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	0	0.0325	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1125	chrM:8651:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	10878	10385	0	0	0.0244	0.0081	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	0	0.0325	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1121	chrM:8647:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	YES	10892	10244	0	0	0.0244	0.0081	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	0	0	0.0325	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	16720	8	0	0.33	0.0244	0.0081	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	0	0.33	0.0325	FALSE	230	193	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	16	1	0.2	0.8	0.0244	0.0081	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	0.2	0.8	0.0325	FALSE	344	821	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	PDLIM5--SMARCAD1	3	1	PDLIM5	6235	chr4:95445026:+	SMARCAD1	43340	chr4:95162057:+	ONLY_REF_SPLICE	YES	31	21	0.11	0.16	0.0244	0.0081	{Klijn_CCL:Lung=1},PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+,SMARCAD1->SWI/SNF-related,_matrix-associated_actin-dependent_regulator_of_chromatin,_subfamily_a,_containing_DEAD/H_box_1,chr4:95128762-95212443:+	NCIH1623_LUNG	0.11	0.16	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	VWA8--ARHGEF7	3	1	VWA8	17519	chr13:42385361:-	ARHGEF7	62756	chr13:111857636:+	ONLY_REF_SPLICE	YES	11	16	0.27	0.2	0.0244	0.0081	VWA8->chr13:42140973-42535256:-,von_Willebrand_factor_A_domain_containing_8,ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+	NCIH1623_LUNG	0.2	0.27	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	HSPBP1--GRK5	3	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH1623_LUNG	1	1	0.0244	TRUE	1	39	0	134	39	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1068	chrM:8594:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	1	1	0.0244	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1158	chrM:8684:+	MT-RNR2	5773	chrM:2762:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	1	1	0.0244	FALSE	62	15	1	57	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1172	chrM:8698:+	MT-RNR2	5313	chrM:2302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1623_LUNG	1	1	0.0244	FALSE	63	17	1	58	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND3--MT-TG	3	0	MT-ND3	1063	chrM:10121:+	MT-TG	4390	chrM:10034:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	NCIH1623_LUNG	1	1	0.0244	FALSE	97	9	0	14	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND3--MT-TG	3	0	MT-ND3	1049	chrM:10107:+	MT-TG	4413	chrM:10057:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	NCIH1623_LUNG	1	1	0.0244	FALSE	97	9	0	14	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	1	1	0.0244	FALSE	231	204	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1164	chrM:10923:+	MT-ATP8	5455	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	1	1	0.0244	FALSE	230	193	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1114	chrM:10873:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	1	1	0.0244	FALSE	230	193	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1116	chrM:10875:+	MT-ATP8	5453	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1623_LUNG	1	1	0.0244	FALSE	230	193	14	283	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1019	chrM:10778:+	MT-ND4L	5617	chrM:10708:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	1	1	0.0244	FALSE	344	821	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1015	chrM:10774:+	MT-ND4L	5613	chrM:10704:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1623_LUNG	1	1	0.0244	FALSE	344	821	44	306	0	FALSE	ACH-000744
NCIH1623_LUNG	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0081	0.0651	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1623_LUNG	1	1	0.0732	FALSE	192	492	57	212	0	FALSE	ACH-000744
NCIH1623_LUNG	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0.0325	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1623_LUNG	1	1	0.0488	FALSE	467	2173	244	435	0	FALSE	ACH-000744
NCIH1623_LUNG	SLC7A5--MT-CO2	3	0	SLC7A5	12679	chr16:87865530:-	MT-CO2	17687	chrM:7692:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1623_LUNG	1	1	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000744
NCIH1623_LUNG	RBM47--APBB2	2	3	RBM47	1413	chr4:40632480:-	APBB2	46528	chr4:40832594:-	ONLY_REF_SPLICE	YES	16	11	0.24	0.31	0.0163	0.0244	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	NCIH1623_LUNG	0.24	0.31	0.0407	TRUE	0	2	0	1	2	TRUE	ACH-000744
NCIH1623_LUNG	CPQ--SDC2	2	1	CPQ	9826	chr8:97892233:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	19	602	0.14	0	0.0163	0.0081	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	NCIH1623_LUNG	0	0.14	0.0244	FALSE	2	35	6	7	0	FALSE	ACH-000744
NCIH1623_LUNG	EYA3--PTAFR	2	1	EYA3	3318	chr1:28374894:-	PTAFR	32185	chr1:28477570:-	ONLY_REF_SPLICE	YES	15	0	0.17	1	0.0163	0.0081	LOCAL_REARRANGEMENT:-:[58470],EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,PTAFR->chr1:28473677-28520447:-,platelet_activating_factor_receptor	NCIH1623_LUNG	0.17	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	MTG1--ADAM8	2	1	MTG1	7895	chr10:135216277:+	ADAM8	15071	chr10:135089091:-	ONLY_REF_SPLICE	YES	89	1	0.03	0.75	0.0163	0.0081	MTG1->chr10:135207598-135234811:+,mitochondrial_ribosome_associated_GTPase_1,ADAM8->ADAM_metallopeptidase_domain_8,chr10:135075907-135090372:-	NCIH1623_LUNG	0.03	0.75	0.0244	TRUE	0	0	0	1	0	FALSE	ACH-000744
NCIH1623_LUNG	PPP1R12A--PAWR	2	1	PPP1R12A	1766	chr12:80328475:-	PAWR	62613	chr12:79968847:-	ONLY_REF_SPLICE	YES	56	1	0.05	0.75	0.0163	0.0081	{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[82466],PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator	NCIH1623_LUNG	0.05	0.75	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000744
NCIH1623_LUNG	SLC39A14--POLR3D	2	1	SLC39A14	1160	chr8:22224921:+	POLR3D	24966	chr8:22105370:+	ONLY_REF_SPLICE	YES	73	52	0.04	0.05	0.0163	0.0081	SLC39A14->chr8:22224762-22291642:+,solute_carrier_family_39_member_14,POLR3D->chr8:22102617-22112113:+,polymerase_(RNA)_III_subunit_D	NCIH1623_LUNG	0.04	0.05	0.0244	TRUE	0	0	0	1	0	FALSE	ACH-000744
NCIH1623_LUNG	GRAMD4--GTSE1	2	0	GRAMD4	5725	chr22:47033857:+	GTSE1	27700	chr22:46704047:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	{Klijn_CCL:Breast=1},GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+,GTSE1->G2_and_S-phase_expressed_1,chr22:46692638-46726707:+	NCIH1623_LUNG	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	KIF2A--RFC5	2	0	KIF2A	22256	chr5:61677080:+	RFC5	35450	chr12:118456877:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	KIF2A->chr5:61601989-61833076:+,kinesin_heavy_chain_member_2A,RFC5->chr12:118451393-118470935:+,replication_factor_C_subunit_5	NCIH1623_LUNG	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1623_LUNG	1	1	0.0163	FALSE	25	145	6	90	0	FALSE	ACH-000744
NCIH1623_LUNG	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1623_LUNG	1	1	0.0163	FALSE	7	44	2	41	0	FALSE	ACH-000744
NCIH1623_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1623_LUNG	1	1	0.0163	FALSE	292	1546	117	613	0	FALSE	ACH-000744
NCIH1623_LUNG	PCBP2--CSAD	1	4	PCBP2	17760	chr12:53865591:+	CSAD	36105	chr12:53555173:-	ONLY_REF_SPLICE	NO	1053	37	0	0.12	0.0081	0.0325	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CSAD->chr12:53551447-53575135:-,cysteine_sulfinic_acid_decarboxylase	NCIH1623_LUNG	0	0.12	0.0406	FALSE	0	0	0	1	0	FALSE	ACH-000744
NCIH1623_LUNG	PPP1R12A--RP1-78O14.1	2	0	PPP1R12A	1766	chr12:80328475:-	RP1-78O14.1	43357	chr12:79735189:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,RP1-78O14.1->chr12:79734985-79897176:-	NCIH1623_LUNG	1	1	0.0163	TRUE	0	0	0	2	0	TRUE	ACH-000744
NCIH1623_LUNG	SCEL--FAM194B	2	0	SCEL	5137	chr13:78138034:+	FAM194B	45245	chr13:46137923:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	SCEL->chr13:78109809-78219398:+,sciellin,FAM194B->chr13:46108657-46189874:-	NCIH1623_LUNG	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	UVSSA--MAEA	2	0	UVSSA	1924	chr4:1341977:+	MAEA	26629	chr4:1305767:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	GTEx_FI:{Blood=[count:5=pct:2.9],Skin=[count:4=pct:1.3],Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:1=pct:0.8],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[7119],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	NCIH1623_LUNG	1	1	0.0163	TRUE	0	3	0	4	2	TRUE	ACH-000744
NCIH1623_LUNG	SLC39A14--POLR3D	1	3	SLC39A14	1160	chr8:22224921:+	POLR3D	23158	chr8:22102958:+	ONLY_REF_SPLICE	YES	73	1	0.05	0.8	0.0081	0.0244	SLC39A14->chr8:22224762-22291642:+,solute_carrier_family_39_member_14,POLR3D->chr8:22102617-22112113:+,polymerase_(RNA)_III_subunit_D	NCIH1623_LUNG	0.05	0.8	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	CTD-2008L17.1--RP11-456O19.2	1	2	CTD-2008L17.1	3828	chr18:53685010:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	NO	3	0	0.5	1	0.0081	0.0163	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1623_LUNG	0.5	1	0.0244	FALSE	0	9	1	3	0	FALSE	ACH-000744
NCIH1623_LUNG	SHANK3--PPP6R2	1	2	SHANK3	20268	chr22:51160865:+	PPP6R2	37640	chr22:50857775:+	ONLY_REF_SPLICE	YES	8	81	0.27	0.04	0.0081	0.0163	{Klijn_CCL:Lung=1},SHANK3->SH3_and_multiple_ankyrin_repeat_domains_3,chr22:51112843-51171726:+,PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2	NCIH1623_LUNG	0.04	0.27	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	CPQ--SDC2	1	1	CPQ	7410	chr8:97797558:+	SDC2	32248	chr8:97614623:+	ONLY_REF_SPLICE	NO	41	702	0.05	0	0.0081	0.0081	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	NCIH1623_LUNG	0	0.05	0.0162	FALSE	0	0	0	1	0	FALSE	ACH-000744
NCIH1623_LUNG	CPQ--SDC2	1	1	CPQ	1176	chr8:97657630:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	6	602	0.25	0	0.0081	0.0081	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	NCIH1623_LUNG	0	0.25	0.0162	FALSE	1	37	5	9	9	FALSE	ACH-000744
NCIH1623_LUNG	CUX1--COL26A1	1	1	CUX1	6304	chr7:101559505:+	COL26A1	60694	chr7:101090965:+	ONLY_REF_SPLICE	YES	73	5	0.03	0.29	0.0081	0.0081	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,COL26A1->chr7:101006101-101202304:+,collagen_type_XXVI_alpha_1	NCIH1623_LUNG	0.03	0.29	0.0162	TRUE	0	0	0	1	0	FALSE	ACH-000744
NCIH1623_LUNG	FAM76B--SFPQ	1	1	FAM76B	2911	chr11:95521663:-	SFPQ	29745	chr1:35643637:-	ONLY_REF_SPLICE	YES	36	176	0.05	0.01	0.0081	0.0081	FAM76B->chr11:95502106-95523573:-,family_with_sequence_similarity_76_member_B,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	NCIH1623_LUNG	0.01	0.05	0.0162	FALSE	0	0	0	1	0	FALSE	ACH-000744
NCIH1623_LUNG	MYCBP2--N4BP2L2	1	1	MYCBP2	16359	chr13:77825286:-	N4BP2L2	115440	chr13:33016685:-	ONLY_REF_SPLICE	YES	4	8	0.33	0.2	0.0081	0.0081	{Klijn_CCL:Lung=1},MYCBP2->MYC_binding_protein_2,_E3_ubiquitin_protein_ligase,chr13:77618792-77901185:-,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	NCIH1623_LUNG	0.2	0.33	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000744
NCIH1623_LUNG	NOC4L--FBRSL1	1	1	NOC4L	5448	chr12:132633440:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	32	42	0.06	0.05	0.0081	0.0081	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	NCIH1623_LUNG	0.05	0.06	0.0162	TRUE	4	9	0	12	0	FALSE	ACH-000744
NCIH1623_LUNG	NOC4L--FBRSL1	1	1	NOC4L	4659	chr12:132632651:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	34	42	0.06	0.05	0.0081	0.0081	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	NCIH1623_LUNG	0.05	0.06	0.0162	TRUE	4	9	0	12	0	FALSE	ACH-000744
NCIH1623_LUNG	RPL18--KHNYN	1	1	RPL18	3811	chr19:49119983:-	KHNYN	11646	chr14:24901928:+	ONLY_REF_SPLICE	YES	1809	72	0	0.03	0.0081	0.0081	RPL18->chr19:49118585-49122793:-,ribosomal_protein_L18,KHNYN->KH_and_NYN_domain_containing,chr14:24898492-24910540:+	NCIH1623_LUNG	0	0.03	0.0162	FALSE	0	0	0	1	0	FALSE	ACH-000744
JHOM2B_OVARY	TXNDC11--ZC3H7A	724	269	TXNDC11	4847	chr16:11824501:-	ZC3H7A	42680	chr16:11846688:-	ONLY_REF_SPLICE	YES	43	52	0.96	0.95	9.8372	3.655	LOCAL_REARRANGEMENT:-:[7708],TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	JHOM2B_OVARY	0.95	0.96	13.4922	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	PTPRK--RSPO3	402	156	PTPRK	1467	chr6:128841404:-	RSPO3	55573	chr6:127469793:+	ONLY_REF_SPLICE	YES	1	0	1	1	5.4621	2.1196	Cosmic{samples=69,mutations=5,papers=2},PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,RSPO3->Oncogene{Bushman},R-spondin_3,chr6:127439749-127518910:+	JHOM2B_OVARY	1	1	7.5817	TRUE	0	6	0	1	6	TRUE	ACH-000333
JHOM2B_OVARY	TXNDC11--ZC3H7A	53	63	TXNDC11	3717	chr16:11827838:-	ZC3H7A	42680	chr16:11846688:-	ONLY_REF_SPLICE	YES	72	52	0.62	0.69	0.7201	0.856	LOCAL_REARRANGEMENT:-:[7708],TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	JHOM2B_OVARY	0.62	0.69	1.5761	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	TIMM23B--LINC00843	63	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.856	0.2038	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHOM2B_OVARY	0.99	1	1.0598	TRUE	508	994	45	981	0	FALSE	ACH-000333
JHOM2B_OVARY	PTPRK--RSPO3	7	156	PTPRK	3807	chr6:128812877:-	RSPO3	55573	chr6:127469793:+	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.0951	2.1196	Cosmic{samples=69,mutations=5,papers=2},PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,RSPO3->Oncogene{Bushman},R-spondin_3,chr6:127439749-127518910:+	JHOM2B_OVARY	0.99	1	2.2147	TRUE	0	2	0	1	2	TRUE	ACH-000333
JHOM2B_OVARY	TIMM23--RP11-464F9.1	38	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	137	6	0.22	0.87	0.5163	0.0136	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JHOM2B_OVARY	0.22	0.87	0.5299	TRUE	519	3926	326	965	0	FALSE	ACH-000333
JHOM2B_OVARY	OR51S1--TP53I11	33	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4484	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	JHOM2B_OVARY	1	1	0.4484	TRUE	402	216	10	229	0	FALSE	ACH-000333
JHOM2B_OVARY	MT-ND6--MT-TE	30	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4076	0.0136	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOM2B_OVARY	1	1	0.4212	FALSE	499	1288	110	792	0	FALSE	ACH-000333
JHOM2B_OVARY	MT-TA--MT-TC	28	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3804	0.0679	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOM2B_OVARY	1	1	0.4483	FALSE	462	80	0	856	0	FALSE	ACH-000333
JHOM2B_OVARY	MT-TA--MT-TC	27	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3669	0.0679	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOM2B_OVARY	1	1	0.4348	FALSE	462	80	0	856	0	FALSE	ACH-000333
JHOM2B_OVARY	MT-ND6--MT-TE	22	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2989	0.231	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOM2B_OVARY	0.97	1	0.5299	FALSE	499	1288	110	792	0	FALSE	ACH-000333
JHOM2B_OVARY	BCAR3--ELTD1	21	13	BCAR3	21575	chr1:94041571:-	ELTD1	36185	chr1:79392776:-	ONLY_REF_SPLICE	YES	24	0	0.59	1	0.2853	0.1766	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,ELTD1->chr1:79355449-79472403:-	JHOM2B_OVARY	0.59	1	0.4619	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	TXNDC11--ZC3H7A	1	76	TXNDC11	4847	chr16:11824501:-	ZC3H7A	43844	chr16:11845362:-	ONLY_REF_SPLICE	YES	43	187	0.64	0.29	0.0136	1.0326	LOCAL_REARRANGEMENT:-:[7708],TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	JHOM2B_OVARY	0.29	0.64	1.0462	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	TXNDC11--ZC3H7A	9	33	TXNDC11	2619	chr16:11829873:-	ZC3H7A	42680	chr16:11846688:-	ONLY_REF_SPLICE	YES	124	52	0.25	0.45	0.1223	0.4484	LOCAL_REARRANGEMENT:-:[7708],TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	JHOM2B_OVARY	0.25	0.45	0.5707	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	PTPRK--RSPO3	7	38	PTPRK	1467	chr6:128841404:-	RSPO3	56765	chr6:127471571:+	ONLY_REF_SPLICE	YES	1	87	0.98	0.34	0.0951	0.5163	Cosmic{samples=69,mutations=5,papers=2},PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,RSPO3->Oncogene{Bushman},R-spondin_3,chr6:127439749-127518910:+	JHOM2B_OVARY	0.34	0.98	0.6114	TRUE	0	2	0	1	2	TRUE	ACH-000333
JHOM2B_OVARY	BCAR3--ELTD1	14	7	BCAR3	21575	chr1:94041571:-	ELTD1	37391	chr1:79387471:-	ONLY_REF_SPLICE	YES	24	1	0.47	0.95	0.1902	0.0951	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,ELTD1->chr1:79355449-79472403:-	JHOM2B_OVARY	0.47	0.95	0.2853	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	NRIP1--AF127936.7	13	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1766	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHOM2B_OVARY	1	1	0.1766	FALSE	292	1546	117	613	0	FALSE	ACH-000333
JHOM2B_OVARY	MT-ND6--MT-TE	11	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1495	0.0136	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOM2B_OVARY	1	1	0.1631	FALSE	499	1288	110	792	0	FALSE	ACH-000333
JHOM2B_OVARY	MT-ND6--MT-ND5	10	2	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1534	1	0.01	0.1359	0.0272	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	JHOM2B_OVARY	0.01	1	0.1631	FALSE	101	855	57	72	0	FALSE	ACH-000333
JHOM2B_OVARY	MT-ND6--MT-ND5	9	2	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	2343	1560	0	0.01	0.1223	0.0272	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	JHOM2B_OVARY	0	0.01	0.1495	FALSE	101	855	57	72	0	FALSE	ACH-000333
JHOM2B_OVARY	SAMD5--SASH1	9	2	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	12	4	0.48	0.73	0.1223	0.0272	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	JHOM2B_OVARY	0.48	0.73	0.1495	TRUE	53	396	64	110	0	FALSE	ACH-000333
JHOM2B_OVARY	MT-CO3--MT-ATP6	3	23	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	2	0.93	0.93	0.0408	0.3125	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHOM2B_OVARY	0.93	0.93	0.3533	FALSE	189	492	56	216	0	FALSE	ACH-000333
JHOM2B_OVARY	MT-ND6--MT-ND5	8	2	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	2818	1	0	0.1087	0.0272	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	JHOM2B_OVARY	0	1	0.1359	FALSE	101	855	57	72	0	FALSE	ACH-000333
JHOM2B_OVARY	RP11-680G10.1--GSE1	7	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0951	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHOM2B_OVARY	1	1	0.0951	TRUE	465	1949	224	605	0	FALSE	ACH-000333
JHOM2B_OVARY	NRIP1--AF127936.7	5	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.43	1	0.0679	0.0951	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHOM2B_OVARY	0.43	1	0.163	FALSE	164	806	69	479	0	FALSE	ACH-000333
JHOM2B_OVARY	TXNDC11--ZC3H7A	1	22	TXNDC11	3717	chr16:11827838:-	ZC3H7A	43844	chr16:11845362:-	ONLY_REF_SPLICE	YES	72	187	0.24	0.11	0.0136	0.2989	LOCAL_REARRANGEMENT:-:[7708],TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	JHOM2B_OVARY	0.11	0.24	0.3125	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	TXNDC11--ZC3H7A	6	0	TXNDC11	1402	chr16:11836333:-	ZC3H7A	42680	chr16:11846688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0815	0	LOCAL_REARRANGEMENT:-:[7708],TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	JHOM2B_OVARY	1	1	0.0815	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	MT-TA--MT-TC	4	4	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0.0543	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOM2B_OVARY	1	1	0.1086	FALSE	462	80	0	856	0	FALSE	ACH-000333
JHOM2B_OVARY	C15orf57--CBX3	4	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	46	37	0.13	0.16	0.0543	0.0408	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JHOM2B_OVARY	0.13	0.16	0.0951	TRUE	267	562	48	632	0	FALSE	ACH-000333
JHOM2B_OVARY	C15orf57--CBX3	3	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	46	37	0.18	0.21	0.0408	0.0951	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JHOM2B_OVARY	0.18	0.21	0.1359	TRUE	267	562	48	632	0	FALSE	ACH-000333
JHOM2B_OVARY	MT-CO3--MT-ATP6	3	6	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0408	0.0815	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHOM2B_OVARY	0.9	1	0.1223	FALSE	189	492	56	216	0	FALSE	ACH-000333
JHOM2B_OVARY	RP11-120D5.1--MID1	4	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	19	0.86	0.24	0.0543	0.0272	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHOM2B_OVARY	0.24	0.86	0.0815	FALSE	0	48	1	163	0	FALSE	ACH-000333
JHOM2B_OVARY	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHOM2B_OVARY	1	1	0.0543	FALSE	189	492	56	216	0	FALSE	ACH-000333
JHOM2B_OVARY	MT-ND6--MT-ND5	3	2	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	508	1	0.01	0.0408	0.0272	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	JHOM2B_OVARY	0.01	1	0.068	FALSE	101	855	57	72	0	FALSE	ACH-000333
JHOM2B_OVARY	MT-CO3--MT-ATP6	3	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHOM2B_OVARY	1	1	0.0408	FALSE	189	492	56	216	0	FALSE	ACH-000333
JHOM2B_OVARY	MT-CO3--MT-ATP6	3	0	MT-CO3	1158	chrM:9364:+	MT-ATP6	5461	chrM:9203:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHOM2B_OVARY	1	1	0.0408	FALSE	189	492	56	216	0	FALSE	ACH-000333
JHOM2B_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOM2B_OVARY	1	1	0.0408	FALSE	499	1288	110	792	0	FALSE	ACH-000333
JHOM2B_OVARY	BCAR3--ELTD1	1	6	BCAR3	20459	chr1:94047858:-	ELTD1	36185	chr1:79392776:-	ONLY_REF_SPLICE	NO	42	0	0.14	1	0.0136	0.0815	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,ELTD1->chr1:79355449-79472403:-	JHOM2B_OVARY	0.14	1	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	RP11-1L12.3--SLC5A12	2	2	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0.0272	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	JHOM2B_OVARY	1	1	0.0544	TRUE	3	101	0	60	0	FALSE	ACH-000333
JHOM2B_OVARY	ADAP1--NOC4L	2	0	ADAP1	9672	chr7:959605:-	NOC4L	25427	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_v2:{count=2;pct=0.02%;dist=Colon_-_Transverse=2},ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	JHOM2B_OVARY	1	1	0.0272	TRUE	0	2	0	3	1	TRUE	ACH-000333
JHOM2B_OVARY	BCAR3--ELTD1	1	4	BCAR3	20459	chr1:94047858:-	ELTD1	37391	chr1:79387471:-	ONLY_REF_SPLICE	NO	42	1	0.11	0.83	0.0136	0.0543	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,ELTD1->chr1:79355449-79472403:-	JHOM2B_OVARY	0.11	0.83	0.0679	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	CMTM8--CMTM7	2	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	JHOM2B_OVARY	1	1	0.0272	FALSE	118	557	29	88	0	FALSE	ACH-000333
JHOM2B_OVARY	GPHN--UBE2K	2	0	GPHN	5216	chr14:67147903:+	UBE2K	43058	chr4:39776454:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K	JHOM2B_OVARY	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	GRAMD3--ROCK2	2	0	GRAMD3	2583	chr5:125707259:+	ROCK2	39674	chr2:11359152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GRAMD3->GRAM_domain_containing_3,chr5:125695824-125832186:+,ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-	JHOM2B_OVARY	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000333
JHOM2B_OVARY	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0136	0.0543	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHOM2B_OVARY	0.83	1	0.0679	FALSE	407	2205	196	549	0	FALSE	ACH-000333
JHOM2B_OVARY	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0136	0.0543	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHOM2B_OVARY	0.83	1	0.0679	FALSE	515	4851	409	746	0	FALSE	ACH-000333
JHOM2B_OVARY	NRIP1--AF127936.7	1	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.25	1	0.0136	0.0408	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHOM2B_OVARY	0.25	1	0.0544	FALSE	125	705	46	456	0	FALSE	ACH-000333
JHOM2B_OVARY	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	19	1	0.14	0.0136	0.0272	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHOM2B_OVARY	0.14	1	0.0408	FALSE	16	356	14	466	0	FALSE	ACH-000333
JHOM2B_OVARY	FARS2--RP3-380B8.4	1	1	FARS2	9557	chr6:5613553:+	RP3-380B8.4	14405	chr6:5852296:+	ONLY_REF_SPLICE	YES	19	0	0.1	1	0.0136	0.0136	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	JHOM2B_OVARY	0.1	1	0.0272	FALSE	1	11	1	4	0	FALSE	ACH-000333
JHOM2B_OVARY	LDLRAD3--PRR5L	1	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	30278	chr11:36415396:+	ONLY_REF_SPLICE	NO	17	48	0.11	0.04	0.0136	0.0136	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	JHOM2B_OVARY	0.04	0.11	0.0272	FALSE	12	80	1	10	0	FALSE	ACH-000333
JHOM2B_OVARY	NOC4L--FBRSL1	1	1	NOC4L	4659	chr12:132632651:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	NO	32	40	0.06	0.05	0.0136	0.0136	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	JHOM2B_OVARY	0.05	0.06	0.0272	TRUE	4	9	0	12	0	FALSE	ACH-000333
JHOM2B_OVARY	POLE4--RP11-355F16.1	1	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	NO	200	0	0.01	1	0.0136	0.0136	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	JHOM2B_OVARY	0.01	1	0.0272	FALSE	5	7	0	37	0	FALSE	ACH-000333
HS936T_SKIN	ABR--VPS53	162	82	ABR	3401	chr17:1090094:-	VPS53	65367	chr17:505136:-	ONLY_REF_SPLICE	YES	25	38	0.91	0.87	1.8617	0.9423	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	HS936T_SKIN	0.87	0.91	2.804	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	ABR--VPS53	90	95	ABR	4609	chr17:1082961:-	VPS53	65367	chr17:505136:-	ONLY_REF_SPLICE	YES	38	38	0.83	0.83	1.0343	1.0917	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	HS936T_SKIN	0.83	0.83	2.126	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	TIMM23B--LINC00843	84	51	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9653	0.5861	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS936T_SKIN	0.99	1	1.5514	TRUE	508	994	45	981	0	FALSE	ACH-000801
HS936T_SKIN	TIMM23--RP11-464F9.1	48	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	453	2	0.11	0.97	0.5516	0.0919	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS936T_SKIN	0.11	0.97	0.6435	TRUE	519	3926	326	965	0	FALSE	ACH-000801
HS936T_SKIN	RP11-444D3.1--SOX5	33	19	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	20	1	0.72	0.3792	0.2183	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS936T_SKIN	0.72	1	0.5975	TRUE	477	1352	189	275	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND5--MT-ATP8	32	5	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3355	6	0.01	0.86	0.3677	0.0575	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0.01	0.86	0.4252	FALSE	43	37	8	105	0	FALSE	ACH-000801
HS936T_SKIN	ABR--VPS53	6	108	ABR	7895	chr17:1057103:-	VPS53	65367	chr17:505136:-	ONLY_REF_SPLICE	YES	24	38	0.83	0.75	0.069	1.2411	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	HS936T_SKIN	0.75	0.83	1.3101	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	ABR--VPS53	5	108	ABR	7928	chr17:1057070:-	VPS53	65367	chr17:505136:-	INCL_NON_REF_SPLICE	YES	24	38	0.82	0.75	0.0575	1.2411	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	HS936T_SKIN	0.75	0.82	1.2986	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	ABR--VPS53	3	107	ABR	7867	chr17:1057131:-	VPS53	65367	chr17:505136:-	INCL_NON_REF_SPLICE	YES	28	38	0.8	0.74	0.0345	1.2296	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	HS936T_SKIN	0.74	0.8	1.2641	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	ABR--VPS53	1	95	ABR	5752	chr17:1081211:-	VPS53	65367	chr17:505136:-	ONLY_REF_SPLICE	NO	40	38	0.71	0.72	0.0115	1.0917	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	HS936T_SKIN	0.71	0.72	1.1032	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	MT-ND5--MT-ATP8	19	3	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8904	79	0	0.22	0.2183	0.0345	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	0.22	0.2528	FALSE	43	37	8	105	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND5--MT-ATP8	16	13	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	12	0	0.71	1	0.1839	0.1494	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0.71	1	0.3333	FALSE	43	37	8	105	0	FALSE	ACH-000801
HS936T_SKIN	SLC39A11--LINC00511	14	21	SLC39A11	10819	chr17:70943891:-	LINC00511	39209	chr17:70427365:-	ONLY_REF_SPLICE	YES	1063	136	0.03	0.2	0.1609	0.2413	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	HS936T_SKIN	0.03	0.2	0.4022	FALSE	0	3	0	4	0	FALSE	ACH-000801
HS936T_SKIN	FXYD5--COX7B	18	2	FXYD5	6725	chr19:35651704:+	COX7B	13955	chrX:77155015:+	INCL_NON_REF_SPLICE	YES	4231	0	0	1	0.2069	0.023	FXYD5->FXYD_domain_containing_ion_transport_regulator_5,Oncogene{Bushman},chr19:35645633-35660786:+,COX7B->chrX:77154935-77162870:+,cytochrome_c_oxidase_subunit_7B	HS936T_SKIN	0	1	0.2299	TRUE	0	0	0	1	0	FALSE	ACH-000801
HS936T_SKIN	C15orf57--CBX3	14	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	75	72	0.26	0.27	0.1609	0.1379	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS936T_SKIN	0.26	0.27	0.2988	TRUE	267	562	48	632	0	FALSE	ACH-000801
HS936T_SKIN	MT-ATP6--MT-CO2	15	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	54	6	0.28	0.78	0.1724	0.069	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS936T_SKIN	0.28	0.78	0.2414	FALSE	59	21	0	114	0	FALSE	ACH-000801
HS936T_SKIN	NIPA2--POLA1	16	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1839	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	HS936T_SKIN	1	1	0.1839	TRUE	46	1352	75	139	0	FALSE	ACH-000801
HS936T_SKIN	SLC39A11--LINC00511	7	30	SLC39A11	12214	chr17:70845773:-	LINC00511	39209	chr17:70427365:-	ONLY_REF_SPLICE	YES	893	136	0.04	0.21	0.0804	0.3448	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	HS936T_SKIN	0.04	0.21	0.4252	FALSE	0	3	0	1	0	FALSE	ACH-000801
HS936T_SKIN	NIPBL--WDR70	12	9	NIPBL	1420	chr5:36877280:+	WDR70	54689	chr5:37379591:+	ONLY_REF_SPLICE	YES	11	11	0.66	0.66	0.1379	0.1034	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,WDR70->WD_repeat_domain_70,chr5:37379314-37753537:+	HS936T_SKIN	0.66	0.66	0.2413	TRUE	0	2	0	2	1	TRUE	ACH-000801
HS936T_SKIN	RP1-34H18.1--NAV3	13	4	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1494	0.046	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HS936T_SKIN	1	1	0.1954	TRUE	254	575	65	124	0	FALSE	ACH-000801
HS936T_SKIN	SLC39A11--LINC00511	6	30	SLC39A11	18406	chr17:70732789:-	LINC00511	39209	chr17:70427365:-	ONLY_REF_SPLICE	YES	814	136	0.04	0.21	0.069	0.3448	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	HS936T_SKIN	0.04	0.21	0.4138	FALSE	0	4	0	2	0	FALSE	ACH-000801
HS936T_SKIN	MT-ATP6--MT-CO2	9	9	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	54	5	0.25	0.78	0.1034	0.1034	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS936T_SKIN	0.25	0.78	0.2068	FALSE	59	21	0	114	0	FALSE	ACH-000801
HS936T_SKIN	SLC39A11--LINC00511	4	25	SLC39A11	11043	chr17:70943667:-	LINC00511	39209	chr17:70427365:-	ONLY_REF_SPLICE	YES	1143	136	0.02	0.18	0.046	0.2873	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	HS936T_SKIN	0.02	0.18	0.3333	FALSE	0	3	0	4	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND4--MT-CO2	7	10	MT-ND4	1496	chrM:11255:+	MT-CO2	5511	chrM:7718:+	INCL_NON_REF_SPLICE	YES	14881	7258	0	0	0.0804	0.1149	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS936T_SKIN	0	0	0.1953	FALSE	5	1	0	19	0	FALSE	ACH-000801
HS936T_SKIN	ABR--VPS53	7	9	ABR	3029	chr17:1090466:-	VPS53	65367	chr17:505136:-	INCL_NON_REF_SPLICE	YES	41	38	0.28	0.3	0.0804	0.1034	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	HS936T_SKIN	0.28	0.3	0.1838	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	RP11-123O10.4--GRIP1	9	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1034	0.0115	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HS936T_SKIN	1	1	0.1149	FALSE	416	2512	207	587	0	FALSE	ACH-000801
HS936T_SKIN	SLC39A11--LINC00511	4	21	SLC39A11	10840	chr17:70943870:-	LINC00511	39209	chr17:70427365:-	ONLY_REF_SPLICE	YES	1162	136	0.02	0.16	0.046	0.2413	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	HS936T_SKIN	0.02	0.16	0.2873	FALSE	0	3	0	4	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND5--MT-ATP8	5	16	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0.1839	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	1	1	0.2414	FALSE	43	37	8	105	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND4--MT-ATP8	5	13	MT-ND4	2176	chrM:11935:+	MT-ATP8	5382	chrM:8369:+	INCL_NON_REF_SPLICE	YES	5767	0	0	1	0.0575	0.1494	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	1	0.2069	FALSE	231	215	16	283	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND5--MT-ATP8	4	16	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0.1839	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	1	1	0.2299	FALSE	43	37	8	105	0	FALSE	ACH-000801
HS936T_SKIN	ABR--VPS53	1	26	ABR	4609	chr17:1082961:-	VPS53	69414	chr17:465985:-	ONLY_REF_SPLICE	YES	38	118	0.42	0.19	0.0115	0.2988	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	HS936T_SKIN	0.19	0.42	0.3103	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	MT-ATP6--MT-CO2	5	10	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	54	3	0.22	0.83	0.0575	0.1149	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS936T_SKIN	0.22	0.83	0.1724	FALSE	59	21	0	114	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND4--MT-ATP8	7	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10163	6	0	0.57	0.0804	0.0115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	0.57	0.0919	FALSE	230	198	14	283	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND4--MT-ATP8	7	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11935	6	0	0.57	0.0804	0.0115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	0.57	0.0919	FALSE	231	205	14	283	0	FALSE	ACH-000801
HS936T_SKIN	RP11-444D3.1--SOX5	2	21	RP11-444D3.1	9606	chr12:24366277:-	SOX5	13900	chr12:24102595:-	ONLY_REF_SPLICE	YES	0	9	1	0.72	0.023	0.2413	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS936T_SKIN	0.72	1	0.2643	TRUE	8	10	1	12	0	FALSE	ACH-000801
HS936T_SKIN	RP11-444D3.1--SOX5	3	17	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	20	1	0.5	0.0345	0.1954	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS936T_SKIN	0.5	1	0.2299	TRUE	274	363	69	150	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND4--MT-ATP8	4	12	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	12992	0	0	1	0.046	0.1379	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	1	0.1839	FALSE	231	217	16	283	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND5--MT-ATP8	5	8	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	12	528	0.52	0.02	0.0575	0.0919	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0.02	0.52	0.1494	FALSE	43	37	8	105	0	FALSE	ACH-000801
HS936T_SKIN	C15orf57--CBX3	4	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	71	72	0.17	0.17	0.046	0.1264	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS936T_SKIN	0.17	0.17	0.1724	TRUE	267	562	48	632	0	FALSE	ACH-000801
HS936T_SKIN	SLC39A11--LINC00511	2	19	SLC39A11	18406	chr17:70732789:-	LINC00511	40306	chr17:70424439:-	ONLY_REF_SPLICE	YES	814	147	0.03	0.12	0.023	0.2183	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	HS936T_SKIN	0.03	0.12	0.2413	FALSE	0	1	0	2	0	FALSE	ACH-000801
HS936T_SKIN	MT-ATP6--MT-CO2	4	10	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	54	3	0.21	0.82	0.046	0.1149	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS936T_SKIN	0.21	0.82	0.1609	FALSE	59	21	0	114	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND4--MT-ATP8	6	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	10681	1964	0	0	0.069	0.0115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	0	0.0805	FALSE	231	204	14	283	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND4--MT-ATP8	6	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	10076	3	0	0.7	0.069	0.0115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	0.7	0.0805	FALSE	230	193	14	283	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND5--MT-ATP8	3	13	MT-ND5	2749	chrM:14085:+	MT-ATP8	5896	chrM:8449:+	INCL_NON_REF_SPLICE	YES	4	0	0.8	1	0.0345	0.1494	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0.8	1	0.1839	FALSE	43	37	8	105	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND5--MT-ATP8	3	13	MT-ND5	2712	chrM:14048:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	27	0	0.37	1	0.0345	0.1494	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0.37	1	0.1839	FALSE	43	37	8	105	0	FALSE	ACH-000801
HS936T_SKIN	MT-ATP6--MT-CO2	6	0	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS936T_SKIN	1	1	0.069	FALSE	59	21	0	114	0	FALSE	ACH-000801
HS936T_SKIN	MT-ATP6--MT-CO2	5	4	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	53	5	0.15	0.64	0.0575	0.046	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS936T_SKIN	0.15	0.64	0.1035	FALSE	59	21	0	114	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND4--MT-ATP8	4	8	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13001	79	0	0.13	0.046	0.0919	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	0.13	0.1379	FALSE	231	217	16	283	0	FALSE	ACH-000801
HS936T_SKIN	SLC39A11--LINC00511	1	19	SLC39A11	12214	chr17:70845773:-	LINC00511	40306	chr17:70424439:-	ONLY_REF_SPLICE	YES	893	147	0.02	0.12	0.0115	0.2183	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	HS936T_SKIN	0.02	0.12	0.2298	FALSE	0	4	0	1	0	FALSE	ACH-000801
HS936T_SKIN	CALM3--MT-ND4L	5	2	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	730	0	0.01	1	0.0575	0.023	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS936T_SKIN	0.01	1	0.0805	FALSE	1	1	0	107	0	FALSE	ACH-000801
HS936T_SKIN	MT-ATP6--MT-CO2	3	10	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	55	3	0.19	0.81	0.0345	0.1149	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS936T_SKIN	0.19	0.81	0.1494	FALSE	59	21	0	114	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND4--MT-CO2	3	10	MT-ND4	1494	chrM:11253:+	MT-CO2	5509	chrM:7716:+	INCL_NON_REF_SPLICE	YES	14865	6575	0	0	0.0345	0.1149	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS936T_SKIN	0	0	0.1494	FALSE	5	1	0	19	0	FALSE	ACH-000801
HS936T_SKIN	PSAP--MT-ND4L	5	2	PSAP	11191	chr10:73578470:-	MT-ND4L	16468	chrM:10471:+	INCL_NON_REF_SPLICE	YES	5792	0	0	1	0.0575	0.023	PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS936T_SKIN	0	1	0.0805	FALSE	0	0	0	2	0	FALSE	ACH-000801
HS936T_SKIN	SLC39A11--LINC00511	2	14	SLC39A11	10840	chr17:70943870:-	LINC00511	40306	chr17:70424439:-	ONLY_REF_SPLICE	YES	1162	147	0.01	0.1	0.023	0.1609	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	HS936T_SKIN	0.01	0.1	0.1839	FALSE	0	2	0	3	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND4--MT-ATP8	3	9	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	13526	0	0	1	0.0345	0.1034	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	1	0.1379	FALSE	231	217	16	283	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND4--MT-ATP8	3	9	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	13672	0	0	1	0.0345	0.1034	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	1	0.1379	FALSE	231	217	16	283	0	FALSE	ACH-000801
HS936T_SKIN	MT-CO1--GDF15	5	0	MT-CO1	1598	chrM:6501:+	GDF15	8334	chr19:18496967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,GDF15->Oncogene{Bushman},chr19:18485541-18499986:+,growth_differentiation_factor_15	HS936T_SKIN	1	1	0.0575	FALSE	0	0	0	1	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND4--MT-ATP8	3	8	MT-ND4	1779	chrM:11538:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13824	79	0	0.12	0.0345	0.0919	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	0.12	0.1264	FALSE	231	217	16	283	0	FALSE	ACH-000801
HS936T_SKIN	SLC39A11--LINC00511	1	16	SLC39A11	11043	chr17:70943667:-	LINC00511	40306	chr17:70424439:-	ONLY_REF_SPLICE	YES	1143	147	0.01	0.1	0.0115	0.1839	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	HS936T_SKIN	0.01	0.1	0.1954	FALSE	0	2	0	3	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND4--MT-ATP8	3	7	MT-ND4	1645	chrM:11404:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	15434	79	0	0.11	0.0345	0.0804	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	0.11	0.1149	FALSE	231	217	16	283	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND4--MT-ATP8	3	6	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	16488	755	0	0.01	0.0345	0.069	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	0.01	0.1035	FALSE	231	217	16	283	0	FALSE	ACH-000801
HS936T_SKIN	SLC39A11--LINC00511	1	14	SLC39A11	10819	chr17:70943891:-	LINC00511	40306	chr17:70424439:-	ONLY_REF_SPLICE	NO	1063	147	0.01	0.09	0.0115	0.1609	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	HS936T_SKIN	0.01	0.09	0.1724	FALSE	0	2	0	3	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND4--MT-ATP8	3	5	MT-ND4	1531	chrM:11290:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	16841	1	0	0.89	0.0345	0.0575	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	0.89	0.092	FALSE	231	217	16	283	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND5--MT-ATP8	4	1	MT-ND5	1248	chrM:12584:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7834	6	0	0.45	0.046	0.0115	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	0.45	0.0575	FALSE	42	35	7	104	0	FALSE	ACH-000801
HS936T_SKIN	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.046	0.0115	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS936T_SKIN	0.71	1	0.0575	FALSE	292	1546	117	613	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND4--MT-ATP8	3	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	14894	0	0	1	0.0345	0.046	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	1	0.0805	FALSE	231	217	16	283	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND4--MT-ATP8	3	4	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	14925	0	0	1	0.0345	0.046	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	1	0.0805	FALSE	231	217	16	283	0	FALSE	ACH-000801
HS936T_SKIN	NOTCH2NL--SEC22B	4	0	NOTCH2NL	1318	chr1:145209436:+	SEC22B	21447	chr1:145109524:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.046	0	LOCAL_REARRANGEMENT:+:[92197],NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HS936T_SKIN	1	1	0.046	TRUE	0	1	0	1	0	TRUE	ACH-000801
HS936T_SKIN	RP4-565E6.1--HYDIN	3	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0.046	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS936T_SKIN	1	1	0.0805	TRUE	456	1387	91	133	0	FALSE	ACH-000801
HS936T_SKIN	NRIP1--AF127936.7	3	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.27	1	0.0345	0.0345	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS936T_SKIN	0.27	1	0.069	FALSE	164	806	69	479	0	FALSE	ACH-000801
HS936T_SKIN	MT-ND5--MT-ATP8	3	2	MT-ND5	1671	chrM:13007:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	3705	689	0	0.01	0.0345	0.023	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS936T_SKIN	0	0.01	0.0575	FALSE	42	36	7	104	0	FALSE	ACH-000801
HS936T_SKIN	SLC7A5--ACTG1	3	2	SLC7A5	8068	chr16:87871474:-	ACTG1	21178	chr17:79478603:-	INCL_NON_REF_SPLICE	YES	2367	13213	0	0	0.0345	0.023	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HS936T_SKIN	0	0	0.0575	FALSE	0	0	0	11	0	FALSE	ACH-000801
HS936T_SKIN	SLC39A11--LINC00511	1	9	SLC39A11	12214	chr17:70845773:-	LINC00511	45004	chr17:70400957:-	ONLY_REF_SPLICE	NO	893	121	0.01	0.08	0.0115	0.1034	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	HS936T_SKIN	0.01	0.08	0.1149	FALSE	0	0	0	2	0	FALSE	ACH-000801
HS936T_SKIN	MT-ATP6--MT-CO2	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS936T_SKIN	1	1	0.0345	FALSE	59	21	0	114	0	FALSE	ACH-000801
HS936T_SKIN	NRIP1--AF127936.7	2	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.38	1	0.023	0.0345	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS936T_SKIN	0.38	1	0.0575	FALSE	125	705	46	456	0	FALSE	ACH-000801
HS936T_SKIN	HNRNPA2B1--SFPQ	2	2	HNRNPA2B1	1958	chr7:26240192:-	SFPQ	27852	chr1:35643637:-	ONLY_REF_SPLICE	YES	3551	76	0	0.05	0.023	0.023	HGNC_GENEFAM,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	HS936T_SKIN	0	0.05	0.046	FALSE	1	1	0	1	1	FALSE	ACH-000801
HS936T_SKIN	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	208	0.67	0.02	0.023	0.023	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HS936T_SKIN	0.02	0.67	0.046	FALSE	16	356	14	466	0	FALSE	ACH-000801
HS936T_SKIN	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.023	0.0115	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS936T_SKIN	0.75	1	0.0345	FALSE	515	4851	409	746	0	FALSE	ACH-000801
HS936T_SKIN	ABHD2--AP3S2	2	0	ABHD2	2105	chr15:89631794:+	AP3S2	43418	chr15:90380954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	ABHD2->Oncogene{Bushman},abhydrolase_domain_containing_2,chr15:89630690-89745591:+,AP3S2->adaptor_related_protein_complex_3_sigma_2_subunit,chr15:90373831-90437574:-	HS936T_SKIN	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	GPR110--TNFRSF21	2	0	GPR110	7908	chr6:46988467:-	TNFRSF21	31544	chr6:47252168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	{Klijn_CCL:Stomach=1},GPR110->chr6:46965440-47010099:-,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	HS936T_SKIN	1	1	0.023	TRUE	0	0	0	2	0	TRUE	ACH-000801
HS936T_SKIN	MREG--CWF19L2	2	0	MREG	4859	chr2:216861029:-	CWF19L2	15676	chr11:107312348:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	MREG->chr2:216809213-216898819:-,melanoregulin,CWF19L2->CWF19-like_2,_cell_cycle_control_(S._pombe),chr11:107197071-107328572:-	HS936T_SKIN	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	MTMR12--BEAN1	2	0	MTMR12	1252	chr5:32312864:-	BEAN1	28030	chr16:66471498:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	MTMR12->chr5:32227100-32313115:-,myotubularin_related_protein_12,BEAN1->brain_expressed,_associated_with_NEDD4,_1,chr16:66461200-66527432:+	HS936T_SKIN	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	RAB9A--GPM6B	2	0	RAB9A	1164	chrX:13707407:+	GPM6B	14645	chrX:13803927:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	LOCAL_INVERSION:+:-:[60525],RAB9A->RAB9A,_member_RAS_oncogene_family,chrX:13707244-13728625:+,GPM6B->chrX:13789150-13956757:-,glycoprotein_M6B	HS936T_SKIN	1	1	0.023	TRUE	0	2	0	1	0	TRUE	ACH-000801
HS936T_SKIN	RP1-34H18.1--RP11-781A6.1	2	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	HS936T_SKIN	1	1	0.023	TRUE	94	160	11	37	0	FALSE	ACH-000801
HS936T_SKIN	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HS936T_SKIN	1	1	0.023	TRUE	53	396	64	110	0	FALSE	ACH-000801
HS936T_SKIN	SKP1--CTNNA1	2	0	SKP1	1184	chr5:133512546:-	CTNNA1	34546	chr5:138145727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	HS936T_SKIN	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	SLC39A11--LINC00511	2	0	SLC39A11	9695	chr17:70989030:-	LINC00511	39209	chr17:70427365:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	HS936T_SKIN	1	1	0.023	FALSE	0	0	0	3	0	FALSE	ACH-000801
HS936T_SKIN	SNHG16--CYGB	2	0	SNHG16	1092	chr17:74553939:+	CYGB	14411	chr17:74527773:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	LOCAL_INVERSION:+:-:[6591],SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,CYGB->chr17:74523438-74547257:-,cytoglobin	HS936T_SKIN	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000801
HS936T_SKIN	DNAJB11--EEF2	1	1	DNAJB11	2997	chr3:186288754:+	EEF2	20782	chr19:3983289:-	ONLY_REF_SPLICE	YES	631	4617	0	0	0.0115	0.0115	DNAJB11->DnaJ_heat_shock_protein_family_(Hsp40)_member_B11,chr3:186285192-186315061:+,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	HS936T_SKIN	0	0	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000801
HS936T_SKIN	GAK--APOA1BP	1	1	GAK	4885	chr4:906523:-	APOA1BP	41443	chr1:156562157:+	ONLY_REF_SPLICE	YES	376	1446	0.01	0	0.0115	0.0115	GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase,APOA1BP->chr1:156561554-156564091:+	HS936T_SKIN	0	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000801
HS936T_SKIN	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0115	0.0115	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS936T_SKIN	0.67	1	0.023	FALSE	407	2205	196	549	0	FALSE	ACH-000801
HS936T_SKIN	RPRD1A--PLEKHA2	1	1	RPRD1A	10586	chr18:33606863:-	PLEKHA2	26514	chr8:38801307:+	ONLY_REF_SPLICE	NO	98	98	0.02	0.02	0.0115	0.0115	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,PLEKHA2->Oncogene{Bushman},chr8:38758753-38831428:+,pleckstrin_homology_domain_containing_A2	HS936T_SKIN	0.02	0.02	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000801
HS936T_SKIN	SNCA--LGALS3	1	1	SNCA	5931	chr4:90743397:-	LGALS3	17135	chr14:55604763:+	ONLY_REF_SPLICE	YES	2033	127	0	0.02	0.0115	0.0115	SNCA->chr4:90645250-90759466:-,synuclein_alpha,LGALS3->Oncogene{Bushman},chr14:55590828-55612126:+,lectin,_galactoside_binding_soluble_3	HS936T_SKIN	0	0.02	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000801
HS936T_SKIN	TNFRSF19--MIPEP	1	1	TNFRSF19	5954	chr13:24167594:+	MIPEP	23399	chr13:24455926:-	ONLY_REF_SPLICE	YES	208	227	0.01	0.01	0.0115	0.0115	GTEx_v2:{count=8;pct=0.09%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Minor_Salivary_Gland=1,Esophagus_-_Mucosa=1},LOCAL_INVERSION:+:-:[54096],TNFRSF19->chr13:24144509-24250232:+,tumor_necrosis_factor_receptor_superfamily_member_19,MIPEP->chr13:24304328-24463558:-,mitochondrial_intermediate_peptidase	HS936T_SKIN	0.01	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000801
HS936T_SKIN	UBAP2L--C1orf43	1	1	UBAP2L	3350	chr1:154197689:+	C1orf43	34789	chr1:154187050:-	ONLY_REF_SPLICE	YES	688	2137	0	0	0.0115	0.0115	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Artery_-_Coronary=1},NEIGHBORS_OVERLAP:+:-:[449],UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like,C1orf43->chr1:154179182-154193104:-,chromosome_1_open_reading_frame_43	HS936T_SKIN	0	0	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000801
CAL120_BREAST	EIF3C--NMRAL1	267	98	EIF3C	6289	chr16:28726755:+	NMRAL1	21910	chr16:4531880:-	ONLY_REF_SPLICE	YES	635	0	0.36	1	3.3238	1.22	EIF3C->Oncogene{Bushman},chr16:28699879-28747051:+,eukaryotic_translation_initiation_factor_3_subunit_C,NMRAL1->NmrA-like_family_domain_containing_1,chr16:4511681-4545764:-	CAL120_BREAST	0.36	1	4.5438	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	PAGR1--CDH1	89	35	PAGR1	2329	chr16:29828613:+	CDH1	14392	chr16:68835573:+	ONLY_REF_SPLICE	YES	97	2	0.56	0.98	1.1079	0.4357	PAGR1->PAXIP1_associated_glutamate_rich_protein_1,chr16:29827285-29841948:+,chr16:29827832-29831438:+,CDH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cadherin_1,chr16:68771128-68869451:+	CAL120_BREAST	0.56	0.98	1.5436	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	TIMM23B--LINC00843	85	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0581	0.3735	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAL120_BREAST	1	1	1.4316	TRUE	508	994	45	981	0	FALSE	ACH-000212
CAL120_BREAST	POMK--HOOK3	70	40	POMK	2141	chr8:42952758:+	HOOK3	33936	chr8:42868194:+	ONLY_REF_SPLICE	YES	123	93	0.47	0.54	0.8714	0.4979	LOCAL_REARRANGEMENT:+:[62976],POMK->chr8:42948658-42978577:+,protein-O-mannose_kinase,HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3	CAL120_BREAST	0.47	0.54	1.3693	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	TBC1D31--NUP133	65	27	TBC1D31	9396	chr8:124105982:+	NUP133	47216	chr1:229613507:-	ONLY_REF_SPLICE	YES	53	43	0.63	0.68	0.8092	0.3361	TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+,NUP133->Oncogene{Bushman},chr1:229577045-229644103:-,nucleoporin_133kDa	CAL120_BREAST	0.63	0.68	1.1453	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	TIMM23--RP11-464F9.1	55	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	335	13	0.15	0.81	0.6847	0.0249	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAL120_BREAST	0.15	0.81	0.7096	TRUE	519	3926	326	965	0	FALSE	ACH-000212
CAL120_BREAST	MT-TA--MT-TC	51	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6349	0.0622	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL120_BREAST	1	1	0.6971	FALSE	462	80	0	856	0	FALSE	ACH-000212
CAL120_BREAST	FASN--LDHA	47	0	FASN	16505	chr17:80039488:-	LDHA	32493	chr11:18427025:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5851	0	GTEx&tcga_normals:1/3694=0.03%,FASN->chr17:80036214-80056208:-,fatty_acid_synthase,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	CAL120_BREAST	1	1	0.5851	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	QPCTL--MRPL4	41	18	QPCTL	2074	chr19:46196814:+	MRPL4	11466	chr19:10363073:+	ONLY_REF_SPLICE	YES	80	206	0.42	0.22	0.5104	0.2241	{Klijn_CCL:Breast=1},QPCTL->chr19:46195741-46207247:+,glutaminyl-peptide_cyclotransferase-like,MRPL4->chr19:10362577-10370721:+,mitochondrial_ribosomal_protein_L4	CAL120_BREAST	0.22	0.42	0.7345	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	CCDC88C--CATSPERB	32	16	CCDC88C	2107	chr14:91883082:-	CATSPERB	71858	chr14:92084080:-	ONLY_REF_SPLICE	YES	15	0	0.76	1	0.3984	0.1992	CCDC88C->chr14:91737667-91884188:-,coiled-coil_domain_containing_88C,CATSPERB->cation_channel_sperm_associated_auxiliary_subunit_beta,chr14:92047040-92247051:-	CAL120_BREAST	0.76	1	0.5976	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	SLC3A2--TAF6L	27	22	SLC3A2	1336	chr11:62623853:+	TAF6L	18452	chr11:62543243:+	ONLY_REF_SPLICE	YES	137	11	0.26	0.82	0.3361	0.2739	LOCAL_REARRANGEMENT:+:[68704],SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2,TAF6L->TATA-box_binding_protein_associated_factor_6_like,chr11:62538775-62554814:+	CAL120_BREAST	0.26	0.82	0.61	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	SNED1--DNAH7	28	6	SNED1	1213	chr2:241938467:+	DNAH7	119221	chr2:196621009:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3486	0.0747	{Klijn_CCL:Breast=1},SNED1->chr2:241938255-242034983:+,sushi,_nidogen_and_EGF_like_domains_1,DNAH7->chr2:196602427-196933536:-,dynein_axonemal_heavy_chain_7	CAL120_BREAST	1	1	0.4233	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	MYH9--PLEC	25	1	MYH9	34420	chr22:36685212:-	PLEC	71710	chr8:144998273:-	INCL_NON_REF_SPLICE	YES	528	154	0.05	0.14	0.3112	0.0124	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,PLEC->chr8:144989321-145050902:-,plectin	CAL120_BREAST	0.05	0.14	0.3236	TRUE	0	0	0	1	0	FALSE	ACH-000212
CAL120_BREAST	PCBP2--CDS2	25	0	PCBP2	21220	chr12:53873447:+	CDS2	47498	chr20:5177872:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3112	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	CAL120_BREAST	1	1	0.3112	TRUE	0	802	86	3	772	TRUE	ACH-000212
CAL120_BREAST	SFRP1--MT-ND4	23	0	SFRP1	5700	chr8:41122538:-	MT-ND4	12224	chrM:11226:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2863	0	SFRP1->chr8:41119481-41167016:-,secreted_frizzled-related_protein_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	CAL120_BREAST	1	1	0.2863	FALSE	0	0	0	1	0	FALSE	ACH-000212
CAL120_BREAST	PCBP2--CDS2	21	0	PCBP2	21228	chr12:53873455:+	CDS2	47507	chr20:5177881:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2614	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	CAL120_BREAST	1	1	0.2614	TRUE	0	802	86	3	772	TRUE	ACH-000212
CAL120_BREAST	LRIG3--MDM2	14	23	LRIG3	1523	chr12:59313781:-	MDM2	24502	chr12:69202988:+	ONLY_REF_SPLICE	YES	20	149	0.65	0.2	0.1743	0.2863	{Klijn_CCL:Breast=1},LRIG3->chr12:59265931-59314303:-,leucine-rich_repeats_and_immunoglobulin_like_domains_3,MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+	CAL120_BREAST	0.2	0.65	0.4606	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	RP11-123O10.4--GRIP1	16	14	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1992	0.1743	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAL120_BREAST	1	1	0.3735	FALSE	416	2512	207	587	0	FALSE	ACH-000212
CAL120_BREAST	CPSF6--RP11-426C22.5	13	12	CPSF6	1170	chr12:69633486:+	RP11-426C22.5	24414	chr16:29228802:+	ONLY_REF_SPLICE	YES	93	0	0.21	1	0.1618	0.1494	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,RP11-426C22.5->chr16:29127448-29229181:+	CAL120_BREAST	0.21	1	0.3112	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	STK32B--CTD-2081C10.1	14	4	STK32B	7761	chr4:5333120:+	CTD-2081C10.1	28919	chr5:53080974:-	ONLY_REF_SPLICE	YES	3	0	0.86	1	0.1743	0.0498	STK32B->chr4:5053169-5502725:+,serine/threonine_kinase_32B,CTD-2081C10.1->chr5:53072474-53115516:-	CAL120_BREAST	0.86	1	0.2241	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	MT-ND6--MT-TE	14	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1743	0.0249	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL120_BREAST	1	1	0.1992	FALSE	499	1288	110	792	0	FALSE	ACH-000212
CAL120_BREAST	MFSD7--ARL15	13	3	MFSD7	3910	chr4:680321:-	ARL15	18303	chr5:53182543:-	ONLY_REF_SPLICE	YES	0	29	1	0.36	0.1618	0.0373	MFSD7->chr4:675618-683230:-,major_facilitator_superfamily_domain_containing_7,ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-	CAL120_BREAST	0.36	1	0.1991	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	MT-ND6--MT-TE	12	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.1494	0.0747	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL120_BREAST	0.86	1	0.2241	FALSE	499	1288	110	792	0	FALSE	ACH-000212
CAL120_BREAST	MT-ND6--MT-TE	13	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1618	0.0249	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL120_BREAST	1	1	0.1867	FALSE	499	1288	110	792	0	FALSE	ACH-000212
CAL120_BREAST	ATF7--RP11-231C14.5	11	9	ATF7	2534	chr12:53994737:-	RP11-231C14.5	25520	chr16:29493806:+	ONLY_REF_SPLICE	YES	51	0	0.28	1	0.1369	0.112	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,RP11-231C14.5->chr16:29490200-29493912:+	CAL120_BREAST	0.28	1	0.2489	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	PRR14--ANKS3	10	11	PRR14	3692	chr16:30664729:+	ANKS3	20221	chr16:4755254:-	ONLY_REF_SPLICE	YES	67	27	0.24	0.44	0.1245	0.1369	PRR14->chr16:30662038-30667761:+,proline_rich_14,ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-	CAL120_BREAST	0.24	0.44	0.2614	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	EDARADD--CCDC26	10	8	EDARADD	9428	chr1:236631576:+	CCDC26	21822	chr8:130365226:-	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1245	0.0996	EDARADD->EDAR-associated_death_domain,chr1:236511562-236648214:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	CAL120_BREAST	0.95	1	0.2241	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	MT-TA--MT-TC	10	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1245	0.0498	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL120_BREAST	1	1	0.1743	FALSE	462	80	0	856	0	FALSE	ACH-000212
CAL120_BREAST	NIPA2--POLA1	11	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1369	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	CAL120_BREAST	1	1	0.1369	TRUE	46	1352	75	139	0	FALSE	ACH-000212
CAL120_BREAST	ZNRF3--CRYBB1	10	2	ZNRF3	1475	chr22:29280054:+	CRYBB1	23966	chr22:26997985:-	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.1245	0.0249	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,CRYBB1->chr22:26995242-27014052:-,crystallin_beta_B1	CAL120_BREAST	0.75	1	0.1494	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	PCAT1--RP11-382A18.2	8	6	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0996	0.0747	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	CAL120_BREAST	0.93	1	0.1743	TRUE	4	84	1	46	0	FALSE	ACH-000212
CAL120_BREAST	PRR16--CTD-2334D19.1	6	13	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	131	1	0.13	0.95	0.0747	0.1618	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CAL120_BREAST	0.13	0.95	0.2365	FALSE	21	45	1	60	0	FALSE	ACH-000212
CAL120_BREAST	PCBP2--CDS2	9	0	PCBP2	21225	chr12:53873452:+	CDS2	47503	chr20:5177877:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.112	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	CAL120_BREAST	1	1	0.112	TRUE	0	802	86	3	772	TRUE	ACH-000212
CAL120_BREAST	PRR16--CTD-2334D19.1	7	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	232	1	0.05	0.92	0.0871	0.0622	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CAL120_BREAST	0.05	0.92	0.1493	FALSE	56	216	12	147	0	FALSE	ACH-000212
CAL120_BREAST	PCBP2--CDS2	8	0	PCBP2	21228	chr12:53873455:+	CDS2	47508	chr20:5177882:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0996	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	CAL120_BREAST	1	1	0.0996	TRUE	0	802	86	3	772	TRUE	ACH-000212
CAL120_BREAST	RP11-680G10.1--GSE1	7	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	26	1	0.26	0.0871	0.0249	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAL120_BREAST	0.26	1	0.112	TRUE	465	1949	224	605	0	FALSE	ACH-000212
CAL120_BREAST	MT-TA--MT-TC	6	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0.0622	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL120_BREAST	1	1	0.1369	FALSE	462	80	0	856	0	FALSE	ACH-000212
CAL120_BREAST	CDC73--RP11-372E1.6	5	8	CDC73	11760	chr1:193121574:+	RP11-372E1.6	29397	chr3:142708857:+	ONLY_REF_SPLICE	YES	90	0	0.13	1	0.0622	0.0996	CDC73->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cell_division_cycle_73,chr1:193091147-193223031:+,RP11-372E1.6->chr3:142681796-142720401:+	CAL120_BREAST	0.13	1	0.1618	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	CDC73--RP11-372E1.6	6	4	CDC73	11760	chr1:193121574:+	RP11-372E1.6	30970	chr3:142712839:+	ONLY_REF_SPLICE	YES	90	2	0.1	0.83	0.0747	0.0498	CDC73->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cell_division_cycle_73,chr1:193091147-193223031:+,RP11-372E1.6->chr3:142681796-142720401:+	CAL120_BREAST	0.1	0.83	0.1245	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	CTC-301O7.4--ANKRD26P1	5	8	CTC-301O7.4	3141	chr19:49834874:-	ANKRD26P1	7575	chr16:46598211:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0622	0.0996	CTC-301O7.4->chr19:49834874-49843865:-,ANKRD26P1->ankyrin_repeat_domain_26_pseudogene_1,chr16:46503253-46603009:-	CAL120_BREAST	1	1	0.1618	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	PCBP2--CDS2	7	0	PCBP2	21229	chr12:53873456:+	CDS2	47506	chr20:5177880:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0871	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	CAL120_BREAST	1	1	0.0871	TRUE	0	802	86	3	772	TRUE	ACH-000212
CAL120_BREAST	PRR14--ANKS3	4	9	PRR14	3387	chr16:30664424:+	ANKS3	20221	chr16:4755254:-	ONLY_REF_SPLICE	YES	57	27	0.19	0.33	0.0498	0.112	PRR14->chr16:30662038-30667761:+,proline_rich_14,ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-	CAL120_BREAST	0.19	0.33	0.1618	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	MT-ND6--MT-TE	4	6	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.77	1	0.0498	0.0747	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL120_BREAST	0.77	1	0.1245	FALSE	499	1288	110	792	0	FALSE	ACH-000212
CAL120_BREAST	ZNF720--EEF2K	5	2	ZNF720	3917	chr16:31734674:+	EEF2K	21473	chr16:22236975:+	ONLY_REF_SPLICE	YES	22	29	0.24	0.19	0.0622	0.0249	ZNF720->chr16:31724550-31806190:+,zinc_finger_protein_720,EEF2K->chr16:22217603-22298554:+,eukaryotic_elongation_factor_2_kinase	CAL120_BREAST	0.19	0.24	0.0871	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	MT-ND6--MT-TE	3	8	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.79	1	0.0373	0.0996	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL120_BREAST	0.79	1	0.1369	FALSE	499	1288	110	792	0	FALSE	ACH-000212
CAL120_BREAST	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0622	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CAL120_BREAST	1	1	0.0622	TRUE	22	156	2	142	0	FALSE	ACH-000212
CAL120_BREAST	RP11-123O10.4--GRIP1	3	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0.0996	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAL120_BREAST	1	1	0.1369	FALSE	93	270	15	244	0	FALSE	ACH-000212
CAL120_BREAST	RP11-680G10.1--GSE1	4	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.41	0.0498	0.0373	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAL120_BREAST	0.41	1	0.0871	TRUE	458	1351	185	561	0	FALSE	ACH-000212
CAL120_BREAST	MT-ND6--MT-TE	4	2	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0498	0.0249	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL120_BREAST	1	1	0.0747	FALSE	499	1288	110	792	0	FALSE	ACH-000212
CAL120_BREAST	RP11-120D5.1--MID1	4	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	9	110	0.4	0.05	0.0498	0.0249	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CAL120_BREAST	0.05	0.4	0.0747	FALSE	16	356	14	466	0	FALSE	ACH-000212
CAL120_BREAST	BCL7C--MGRN1	4	1	BCL7C	4461	chr16:30900181:-	MGRN1	16527	chr16:4700366:+	ONLY_REF_SPLICE	YES	115	31	0.04	0.14	0.0498	0.0124	BCL7C->B-cell_CLL/lymphoma_7C,chr16:30844947-30906281:-,MGRN1->chr16:4666494-4740975:+,mahogunin_ring_finger_1	CAL120_BREAST	0.04	0.14	0.0622	TRUE	0	0	0	1	0	FALSE	ACH-000212
CAL120_BREAST	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0498	0.0124	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL120_BREAST	1	1	0.0622	FALSE	462	80	0	856	0	FALSE	ACH-000212
CAL120_BREAST	EIF3C--NMRAL1	3	4	EIF3C	6289	chr16:28726755:+	NMRAL1	25297	chr16:4524793:-	ONLY_REF_SPLICE	YES	635	2	0.01	0.78	0.0373	0.0498	EIF3C->Oncogene{Bushman},chr16:28699879-28747051:+,eukaryotic_translation_initiation_factor_3_subunit_C,NMRAL1->NmrA-like_family_domain_containing_1,chr16:4511681-4545764:-	CAL120_BREAST	0.01	0.78	0.0871	FALSE	0	0	0	1	0	FALSE	ACH-000212
CAL120_BREAST	COL8A1--CMSS1	3	3	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	256	155	0.02	0.04	0.0373	0.0373	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	CAL120_BREAST	0.02	0.04	0.0746	FALSE	76	19	3	26	0	FALSE	ACH-000212
CAL120_BREAST	MECP2--NSDHL	3	3	MECP2	3066	chrX:153357642:-	NSDHL	27175	chrX:152018809:+	ONLY_REF_SPLICE	YES	60	205	0.09	0.03	0.0373	0.0373	MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2,NSDHL->NAD(P)_dependent_steroid_dehydrogenase-like,chrX:151999511-152038273:+	CAL120_BREAST	0.03	0.09	0.0746	TRUE	0	0	0	1	0	FALSE	ACH-000212
CAL120_BREAST	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0.0373	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL120_BREAST	1	1	0.0746	FALSE	462	80	0	856	0	FALSE	ACH-000212
CAL120_BREAST	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0373	0.0373	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL120_BREAST	0.86	1	0.0746	FALSE	467	2173	244	435	0	FALSE	ACH-000212
CAL120_BREAST	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0.0373	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL120_BREAST	1	1	0.0746	FALSE	515	4851	409	746	0	FALSE	ACH-000212
CAL120_BREAST	SRGAP1--DBR1	3	2	SRGAP1	6435	chr12:64410792:+	DBR1	35408	chr3:137893759:-	INCL_NON_REF_SPLICE	YES	38	0	0.12	1	0.0373	0.0249	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,DBR1->chr3:137879854-137893791:-,debranching_RNA_lariats_1	CAL120_BREAST	0.12	1	0.0622	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	CDC42BPA--RP11-381I15.1	2	4	CDC42BPA	6900	chr1:227387258:-	RP11-381I15.1	55782	chr8:132142935:-	ONLY_REF_SPLICE	YES	27	0	0.18	1	0.0249	0.0498	CDC42BPA->CDC42_binding_protein_kinase_alpha,chr1:227177566-227506175:-,RP11-381I15.1->chr8:132142635-132157128:-	CAL120_BREAST	0.18	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	CTD-2152M20.2--GOLPH3	3	0	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	CAL120_BREAST	1	1	0.0373	TRUE	10	26	2	24	0	FALSE	ACH-000212
CAL120_BREAST	CTD-2337A12.1--CAST	3	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	CAL120_BREAST	1	1	0.0373	TRUE	347	1186	183	220	0	FALSE	ACH-000212
CAL120_BREAST	MT-ND1--MT-TL1	3	0	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	CAL120_BREAST	1	1	0.0373	FALSE	210	95	5	49	0	FALSE	ACH-000212
CAL120_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL120_BREAST	1	1	0.0373	FALSE	499	1288	110	792	0	FALSE	ACH-000212
CAL120_BREAST	PCBP2--CDS2	3	0	PCBP2	21228	chr12:53873455:+	CDS2	47509	chr20:5177883:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	CAL120_BREAST	1	1	0.0373	TRUE	0	802	86	3	772	TRUE	ACH-000212
CAL120_BREAST	CTC-301O7.4--MGRN1	2	3	CTC-301O7.4	3141	chr19:49834874:-	MGRN1	8484	chr16:4700366:+	ONLY_REF_SPLICE	YES	0	31	1	0.14	0.0249	0.0373	CTC-301O7.4->chr19:49834874-49843865:-,MGRN1->chr16:4666494-4740975:+,mahogunin_ring_finger_1	CAL120_BREAST	0.14	1	0.0622	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	FRS2--RP11-956E11.1	2	2	FRS2	1182	chr12:69864310:+	RP11-956E11.1	24927	chr12:69853297:+	ONLY_REF_SPLICE	YES	404	0	0.01	1	0.0249	0.0249	LOCAL_REARRANGEMENT:+:[9625],FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RP11-956E11.1->chr12:69843250-69854504:+	CAL120_BREAST	0.01	1	0.0498	FALSE	0	2	0	1	2	FALSE	ACH-000212
CAL120_BREAST	CTC-301O7.4--MGRN1	2	1	CTC-301O7.4	2704	chr19:49835311:-	MGRN1	8484	chr16:4700366:+	ONLY_REF_SPLICE	YES	12	31	0.2	0.09	0.0249	0.0124	CTC-301O7.4->chr19:49834874-49843865:-,MGRN1->chr16:4666494-4740975:+,mahogunin_ring_finger_1	CAL120_BREAST	0.09	0.2	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0.0124	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL120_BREAST	1	1	0.0373	FALSE	292	1546	117	613	0	FALSE	ACH-000212
CAL120_BREAST	TIMM23--RP11-464F9.1	2	1	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	480	13	0.01	0.19	0.0249	0.0124	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAL120_BREAST	0.01	0.19	0.0373	FALSE	5	8	0	33	0	FALSE	ACH-000212
CAL120_BREAST	ZNF536--SLC16A7	2	1	ZNF536	2454	chr19:30775048:+	SLC16A7	24735	chr12:60048933:+	ONLY_REF_SPLICE	YES	0	18	1	0.14	0.0249	0.0124	ZNF536->chr19:30719197-31204445:+,zinc_finger_protein_536,SLC16A7->chr12:59989848-60176395:+,solute_carrier_family_16_member_7	CAL120_BREAST	0.14	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	ADARB1--UBB	2	0	ADARB1	6441	chr21:46548488:+	UBB	34288	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	CAL120_BREAST	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	CDC42BPA--RP11-381I15.1	1	4	CDC42BPA	6900	chr1:227387258:-	RP11-381I15.1	55253	chr8:132143464:-	ONLY_REF_SPLICE	YES	27	0	0.16	1	0.0124	0.0498	CDC42BPA->CDC42_binding_protein_kinase_alpha,chr1:227177566-227506175:-,RP11-381I15.1->chr8:132142635-132157128:-	CAL120_BREAST	0.16	1	0.0622	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	CHKA--STAG1	1	4	CHKA	2767	chr11:67864486:-	STAG1	45454	chr3:136117671:-	ONLY_REF_SPLICE	YES	91	91	0.05	0.05	0.0124	0.0498	CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1	CAL120_BREAST	0.05	0.05	0.0622	TRUE	0	0	0	1	0	FALSE	ACH-000212
CAL120_BREAST	CTC-301O7.4--ANKRD26P1	1	4	CTC-301O7.4	2704	chr19:49835311:-	ANKRD26P1	7575	chr16:46598211:-	ONLY_REF_SPLICE	YES	12	0	0.29	1	0.0124	0.0498	CTC-301O7.4->chr19:49834874-49843865:-,ANKRD26P1->ankyrin_repeat_domain_26_pseudogene_1,chr16:46503253-46603009:-	CAL120_BREAST	0.29	1	0.0622	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	FGFR2--COL14A1	2	0	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	CAL120_BREAST	1	1	0.0249	TRUE	0	0	0	32	0	FALSE	ACH-000212
CAL120_BREAST	MB21D2--FGF12	2	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	CAL120_BREAST	1	1	0.0249	FALSE	0	17	0	46	0	FALSE	ACH-000212
CAL120_BREAST	MECP2--NSDHL	2	0	MECP2	1152	chrX:153363061:-	NSDHL	27175	chrX:152018809:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2,NSDHL->NAD(P)_dependent_steroid_dehydrogenase-like,chrX:151999511-152038273:+	CAL120_BREAST	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	PIEZO2--SLC23A2	2	0	PIEZO2	1064	chr18:11148524:-	SLC23A2	74793	chr20:4893624:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	PIEZO2->chr18:10666480-11148587:-,piezo_type_mechanosensitive_ion_channel_component_2,SLC23A2->chr20:4833002-4990939:-,solute_carrier_family_23_member_2	CAL120_BREAST	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	RP11-108K3.1--GLDN	2	0	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CAL120_BREAST	1	1	0.0249	FALSE	0	30	1	55	0	FALSE	ACH-000212
CAL120_BREAST	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0124	0.0498	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL120_BREAST	1	1	0.0622	FALSE	407	2205	196	549	0	FALSE	ACH-000212
CAL120_BREAST	SHFM1--ACN9	2	0	SHFM1	1204	chr7:96339000:-	ACN9	29383	chr7:96810324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,ACN9->chr7:96745902-96811075:+	CAL120_BREAST	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	TSPAN9--CYHR1	2	0	TSPAN9	3739	chr12:3310422:+	CYHR1	28011	chr8:145678843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	TSPAN9->chr12:3186521-3395730:+,tetraspanin_9,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	CAL120_BREAST	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	COL8A1--CMSS1	1	3	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	344	155	0.01	0.03	0.0124	0.0373	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	CAL120_BREAST	0.01	0.03	0.0497	FALSE	38	10	2	29	0	FALSE	ACH-000212
CAL120_BREAST	KCNMB4--MBD6	1	3	KCNMB4	2923	chr12:70794116:+	MBD6	19309	chr12:57921927:+	ONLY_REF_SPLICE	YES	43	19	0.09	0.17	0.0124	0.0373	KCNMB4->chr12:70760056-70828072:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_4,MBD6->chr12:57914493-57923931:+,methyl-CpG_binding_domain_protein_6	CAL120_BREAST	0.09	0.17	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	KCNMB4--MBD6	1	3	KCNMB4	2923	chr12:70794116:+	MBD6	19312	chr12:57921930:+	ONLY_REF_SPLICE	NO	43	18	0.09	0.18	0.0124	0.0373	KCNMB4->chr12:70760056-70828072:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_4,MBD6->chr12:57914493-57923931:+,methyl-CpG_binding_domain_protein_6	CAL120_BREAST	0.09	0.18	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	CRIM1--FEZ2	1	2	CRIM1	8239	chr2:36669878:+	FEZ2	33882	chr2:36818154:-	ONLY_REF_SPLICE	YES	791	225	0	0.01	0.0124	0.0249	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	CAL120_BREAST	0	0.01	0.0373	FALSE	0	1	0	3	0	FALSE	ACH-000212
CAL120_BREAST	DANCR--CTD-2354A18.1	1	2	DANCR	1530	chr4:53579126:+	CTD-2354A18.1	10188	chr18:70999700:+	ONLY_REF_SPLICE	YES	841	256	0	0.01	0.0124	0.0249	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,CTD-2354A18.1->chr18:70992176-71017113:+	CAL120_BREAST	0	0.01	0.0373	FALSE	0	0	0	5	0	FALSE	ACH-000212
CAL120_BREAST	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	6	110	0.33	0.03	0.0124	0.0249	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CAL120_BREAST	0.03	0.33	0.0373	FALSE	0	48	1	163	0	FALSE	ACH-000212
CAL120_BREAST	CCT2--ALDOA	1	1	CCT2	2011	chr12:69980124:+	ALDOA	25001	chr16:30079967:+	ONLY_REF_SPLICE	YES	5298	3045	0	0	0.0124	0.0124	CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	CAL120_BREAST	0	0	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000212
CAL120_BREAST	EXT1--SAMD12	1	1	EXT1	2769	chr8:119122324:-	SAMD12	31808	chr8:119209971:-	ONLY_REF_SPLICE	YES	259	11	0.01	0.15	0.0124	0.0124	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:-:[77606],EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	CAL120_BREAST	0.01	0.15	0.0248	FALSE	0	6	0	5	5	FALSE	ACH-000212
CAL120_BREAST	HP1BP3--EIF4G3	1	1	HP1BP3	1129	chr1:21113688:-	EIF4G3	30977	chr1:21377487:-	ONLY_REF_SPLICE	YES	68	46	0.03	0.04	0.0124	0.0124	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	CAL120_BREAST	0.03	0.04	0.0248	TRUE	0	0	0	3	0	FALSE	ACH-000212
CAL120_BREAST	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0124	0.0124	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL120_BREAST	0.33	1	0.0248	FALSE	125	705	46	456	0	FALSE	ACH-000212
CAL120_BREAST	RGS7--VSTM2B	1	1	RGS7	2460	chr1:241518999:-	VSTM2B	33555	chr19:30054753:+	ONLY_REF_SPLICE	YES	18	0	0.1	1	0.0124	0.0124	RGS7->chr1:240931554-241520530:-,regulator_of_G-protein_signaling_7,VSTM2B->V-set_and_transmembrane_domain_containing_2B,chr19:30017406-30055386:+	CAL120_BREAST	0.1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000212
CAL120_BREAST	TEAD2--ANKRD26P1	1	1	TEAD2	12657	chr19:49845695:-	ANKRD26P1	18934	chr16:46598211:-	ONLY_REF_SPLICE	YES	297	0	0.01	1	0.0124	0.0124	TEAD2->TEA_domain_transcription_factor_2,chr19:49843852-49865714:-,ANKRD26P1->ankyrin_repeat_domain_26_pseudogene_1,chr16:46503253-46603009:-	CAL120_BREAST	0.01	1	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000212
CAL120_BREAST	TTI1--MADD	1	1	TTI1	6795	chr20:36634599:-	MADD	37866	chr11:47330142:+	ONLY_REF_SPLICE	YES	70	67	0.03	0.03	0.0124	0.0124	TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-,MADD->MAP_kinase_activating_death_domain,chr11:47290712-47351582:+	CAL120_BREAST	0.03	0.03	0.0248	TRUE	0	0	0	1	0	FALSE	ACH-000212
CAL120_BREAST	ZNF536--SLC16A7	1	1	ZNF536	3543	chr19:30787150:+	SLC16A7	24735	chr12:60048933:+	ONLY_REF_SPLICE	YES	0	18	1	0.1	0.0124	0.0124	ZNF536->chr19:30719197-31204445:+,zinc_finger_protein_536,SLC16A7->chr12:59989848-60176395:+,solute_carrier_family_16_member_7	CAL120_BREAST	0.1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000212
WM2664_SKIN	AC104389.28--HBG1	7	0	AC104389.28	1084	chr11:5526799:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1494	0	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	WM2664_SKIN	1	1	0.1494	FALSE	0	1	0	13	0	FALSE	ACH-001239
WM2664_SKIN	TIMM23B--PARGP1	3	7	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.064	0.1494	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	WM2664_SKIN	1	1	0.2134	TRUE	393	2105	140	19	0	FALSE	ACH-001239
WM2664_SKIN	ABL2--HIVEP3	3	0	ABL2	1444	chr1:179198376:-	HIVEP3	34759	chr1:42314760:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.064	0	ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	2	0	TRUE	ACH-001239
WM2664_SKIN	ATP1A1--MFSD2A	3	0	ATP1A1	21957	chr1:116946538:+	MFSD2A	36422	chr1:40434077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	ATP1A1->ATPase_Na+/K+_transporting_subunit_alpha_1,chr1:116915290-116952883:+,MFSD2A->chr1:40420802-40435638:+,major_facilitator_superfamily_domain_containing_2A	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	CKAP5--CEP170P1	3	0	CKAP5	9930	chr11:46829623:-	CEP170P1	48263	chr4:119401579:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5,CEP170P1->centrosomal_protein_170_pseudogene_1,chr4:119388745-119476483:+	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	DNMT3B--GYPC	3	0	DNMT3B	6757	chr20:31375084:+	GYPC	35217	chr2:127453750:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	DNMT3B->DNA_(cytosine-5-)-methyltransferase_3_beta,chr20:31350191-31397162:+,GYPC->chr2:127413509-127454246:+,glycophorin_C_(Gerbich_blood_group)	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	IGFBP3--MT-ND2	3	0	IGFBP3	4690	chr7:45956197:-	MT-ND2	12068	chrM:4821:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	IGFBP3->Oncogene{Bushman},chr7:45951949-45961473:-,insulin_like_growth_factor_binding_protein_3,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	WM2664_SKIN	1	1	0.064	FALSE	0	0	0	1	0	FALSE	ACH-001239
WM2664_SKIN	MDM2--PLBD1	3	0	MDM2	6424	chr12:69210725:+	PLBD1	33893	chr12:14656888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.064	0	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,PLBD1->chr12:14656595-14721283:-,phospholipase_B_domain_containing_1	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	MT-ND6--MTPN	3	0	MT-ND6	1306	chrM:14368:-	MTPN	9580	chr7:135613063:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MTPN->chr7:135611509-135662101:-,myotrophin	WM2664_SKIN	1	1	0.064	FALSE	0	0	0	1	0	FALSE	ACH-001239
WM2664_SKIN	MYH10--EIF1	3	0	MYH10	43447	chr17:8379082:-	EIF1	48013	chr17:39845143:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	MYH10->chr17:8377523-8534079:-,myosin,_heavy_chain_10,_non-muscle,EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	PTMS--ITM2B	3	0	PTMS	4182	chr12:6879165:+	ITM2B	11747	chr13:48830443:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	PTMS->chr12:6874682-6880116:+,parathymosin,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	RPS12--MT-CO1	3	0	RPS12	1589	chr6:133136168:+	MT-CO1	8011	chrM:7026:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	RPS12->chr6:133135580-133138703:+,ribosomal_protein_S12,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	WM2664_SKIN	1	1	0.064	FALSE	0	0	0	1	0	FALSE	ACH-001239
WM2664_SKIN	SEPN1--UQCR11	3	0	SEPN1	13220	chr1:26144216:+	UQCR11	21013	chr19:1597776:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	SEPN1->chr1:26126667-26144713:+,selenoprotein_N,_1,UQCR11->chr19:1578338-1605444:-,chr19:1597171-1605480:-,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_XI	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	SH3BP1--CHCHD6	3	0	SH3BP1	13239	chr22:38046651:+	CHCHD6	22906	chr3:126445954:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	SH3BP1->SH3_domain_binding_protein_1,chr22:38030661-38062939:+,CHCHD6->chr3:126423063-126679249:+,coiled-coil-helix-coiled-coil-helix_domain_containing_6	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	UBE4B--CHRM3-AS2	2	4	UBE4B	32845	chr1:10231387:+	CHRM3-AS2	42832	chr1:239877564:-	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.0427	0.0853	UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,CHRM3-AS2->CHRM3_antisense_RNA_2,chr1:239866684-239893765:-	WM2664_SKIN	0.46	1	0.128	TRUE	0	0	0	2	0	TRUE	ACH-001239
WM2664_SKIN	USP36--CLASP1	3	0	USP36	26313	chr17:76792337:-	CLASP1	85383	chr2:122096858:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	USP36->chr17:76783463-76837523:-,ubiquitin_specific_peptidase_36,CLASP1->chr2:122095352-122407163:-,cytoplasmic_linker_associated_protein_1	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	WBP2--TGFB1	3	0	WBP2	8240	chr17:73843586:-	TGFB1	13754	chr19:41859109:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	WBP2->WW_domain_binding_protein_2,chr17:73841780-73852588:-,TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1	WM2664_SKIN	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	FOXJ3--PIGC	2	2	FOXJ3	11319	chr1:42664773:-	PIGC	25640	chr1:172411970:-	ONLY_REF_SPLICE	YES	4	5	0.5	0.44	0.0427	0.0427	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,PIGC->chr1:172339329-172413230:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_C	WM2664_SKIN	0.44	0.5	0.0854	TRUE	0	0	0	2	0	TRUE	ACH-001239
WM2664_SKIN	SLC20A1--CHN1	2	1	SLC20A1	1273	chr2:113403706:+	CHN1	29567	chr2:175677210:-	ONLY_REF_SPLICE	NO	27	1	0.1	0.75	0.0427	0.0213	SLC20A1->chr2:113403434-113421404:+,solute_carrier_family_20_member_1,CHN1->Oncogene{Bushman},chimerin_1,chr2:175664091-175870097:-	WM2664_SKIN	0.1	0.75	0.064	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	ADC--RNF19B	2	0	ADC	1405	chr1:33547109:+	RNF19B	19287	chr1:33415375:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	ADC->chr1:33546705-33586131:+,RNF19B->chr1:33402046-33430286:-,ring_finger_protein_19B	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	ATAD1--PFKFB4	2	0	ATAD1	10639	chr10:89527430:-	PFKFB4	29574	chr3:48577204:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	ATAD1->ATPase_family,_AAA_domain_containing_1,chr10:89511269-89601100:-,PFKFB4->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_4,chr3:48555117-48599448:-	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	BUB1B--INO80	2	0	BUB1B	22054	chr15:40509868:+	INO80	52141	chr15:41319934:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	BUB1B->BUB1_mitotic_checkpoint_serine/threonine_kinase_B,Oncogene{Bushman},chr15:40453224-40513337:+,INO80->INO80_complex_subunit,chr15:41271078-41408552:-	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	C1orf63--ZMYM4	2	0	C1orf63	8720	chr1:25594231:-	ZMYM4	31059	chr1:35852604:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	CSPG4--SYAP1	2	0	CSPG4	1181	chr15:76005009:-	SYAP1	19431	chrX:16753350:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	CSPG4->Oncogene{Bushman},chondroitin_sulfate_proteoglycan_4,chr15:75966663-76005189:-,SYAP1->chrX:16737755-16783459:+,synapse_associated_protein_1	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	EMC4--RNF215	2	0	EMC4	3848	chr15:34520047:+	RNF215	17401	chr22:30774131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	EMC4->ER_membrane_protein_complex_subunit_4,chr15:34517200-34522357:+,RNF215->chr22:30773835-30817760:-,ring_finger_protein_215	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	KLHL26--EIF3H	2	0	KLHL26	1173	chr19:18747947:+	EIF3H	24807	chr8:117661165:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	KLHL26->chr19:18747775-18781309:+,kelch_like_family_member_26,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	NEK7--RAB4A	2	0	NEK7	16360	chr1:198266370:+	RAB4A	24667	chr1:229422233:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	NEK7->NIMA_related_kinase_7,chr1:198126093-198291550:+,RAB4A->RAB4A,_member_RAS_oncogene_family,chr1:229406822-229441641:+	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	RAB40C--ASB9	2	0	RAB40C	2077	chr16:640433:+	ASB9	20182	chrX:15267057:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+,ASB9->ankyrin_repeat_and_SOCS_box_containing_9,chrX:15253410-15288589:-	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	RP11-712B9.2--PRCP	2	0	RP11-712B9.2	3662	chr11:94890967:+	PRCP	32061	chr11:82536164:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	RP11-712B9.2->chr11:94883703-94967268:+,PRCP->chr11:82534544-82681626:-,prolylcarboxypeptidase	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	SLC35E4--RBM39	2	0	SLC35E4	2418	chr22:31033056:+	RBM39	24373	chr20:34317449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	SLC35E4->chr22:31031639-31065003:+,solute_carrier_family_35_member_E4,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	SUMF1--ZMYM2	2	0	SUMF1	8817	chr3:4418014:-	ZMYM2	47807	chr13:20625573:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,ZMYM2->Oncogene{Bushman},chr13:20532810-20665968:+,zinc_finger_MYM-type_containing_2	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
WM2664_SKIN	TLE4--PTAR1	2	0	TLE4	9501	chr9:82227633:+	PTAR1	38985	chr9:72365866:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	TLE4->chr9:82186688-82341658:+,transducin_like_enhancer_of_split_4,PTAR1->chr9:72324438-72374875:-,protein_prenyltransferase_alpha_subunit_repeat_containing_1	WM2664_SKIN	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-001239
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	138	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.99	1	1.3522	0.049	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	0.99	1	1.4012	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	133	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3032	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	1.3032	FALSE	369	2501	205	193	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	122	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1954	0.098	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	1.2934	FALSE	462	80	0	856	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	333	MT-ND4	2290	chrM:12049:+	MT-ND4L	5392	chrM:10483:+	INCL_NON_REF_SPLICE	YES	48	0	0.88	1	0.0294	3.2629	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.88	1	3.2923	FALSE	268	700	35	287	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	316	MT-ND4	2305	chrM:12064:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	15	0	0.96	1	0.0588	3.0963	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.96	1	3.1551	FALSE	268	700	35	284	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	292	MT-ND4	1209	chrM:10968:+	MT-ND4L	5470	chrM:10561:+	INCL_NON_REF_SPLICE	YES	52	0	0.85	1	0.1176	2.8612	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.85	1	2.9788	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	310	MT-ND4	2320	chrM:12079:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	3	3	0.99	0.99	0.0588	3.0375	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.99	0.99	3.0963	FALSE	263	700	35	281	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	314	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	550	0	0.37	1	0.0392	3.0767	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.37	1	3.1159	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	294	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	51	0	0.86	1	0.0882	2.8808	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.86	1	2.969	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	11	285	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	34	2	0.9	0.99	0.1078	2.7926	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.9	0.99	2.9004	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	300	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	45	0	0.87	1	0.0686	2.9395	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.87	1	3.0081	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	304	MT-ND4	1724	chrM:11483:+	MT-ND4L	5482	chrM:10573:+	INCL_NON_REF_SPLICE	YES	5545	0	0.05	1	0.0588	2.9787	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.05	1	3.0375	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	292	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	54	1	0.85	1	0.0686	2.8612	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.85	1	2.9298	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	303	MT-ND4	1754	chrM:11513:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	YES	7130	3	0.04	0.99	0.0392	2.9689	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.04	0.99	3.0081	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	300	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	44	0	0.87	1	0.0294	2.9395	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.87	1	2.9689	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	287	MT-ND4	1164	chrM:10923:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	39	0	0.88	1	0.0588	2.8122	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.88	1	2.871	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	287	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	44	5	0.87	0.98	0.0588	2.8122	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.87	0.98	2.871	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	294	MT-ND4	1263	chrM:11022:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	66	1	0.82	1	0.0392	2.8808	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.82	1	2.92	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	297	MT-ND4	1197	chrM:10956:+	MT-ND4L	5432	chrM:10523:+	INCL_NON_REF_SPLICE	YES	57	0	0.84	1	0.0294	2.9101	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.84	1	2.9395	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	277	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	26	4	0.92	0.99	0.0686	2.7142	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.92	0.99	2.7828	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	284	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	34	3	0.89	0.99	0.049	2.7828	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.89	0.99	2.8318	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	281	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	32	3	0.9	0.99	0.049	2.7534	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.9	0.99	2.8024	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	284	MT-ND4	1149	chrM:10908:+	MT-ND4L	5493	chrM:10584:+	INCL_NON_REF_SPLICE	YES	34	2	0.89	0.99	0.0392	2.7828	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.89	0.99	2.822	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	280	MT-ND4	1122	chrM:10881:+	MT-ND4L	5515	chrM:10606:+	INCL_NON_REF_SPLICE	YES	28	5	0.91	0.98	0.0392	2.7436	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.91	0.98	2.7828	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	275	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	26	3	0.92	0.99	0.049	2.6946	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.92	0.99	2.7436	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	279	MT-ND4	1114	chrM:10873:+	MT-ND4L	5509	chrM:10600:+	INCL_NON_REF_SPLICE	NO	26	4	0.92	0.99	0.0294	2.7338	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.92	0.99	2.7632	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	277	MT-ND4	1112	chrM:10871:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	27	0	0.91	1	0.0294	2.7142	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.91	1	2.7436	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	211	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	19	5	0.92	0.98	0.147	2.0675	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.92	0.98	2.2145	FALSE	344	821	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	240	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	22	3	0.92	0.99	0.0588	2.3516	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.92	0.99	2.4104	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	62	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6075	0.1568	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.7643	TRUE	508	994	45	981	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	57	31	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	15	0	0.85	1	0.5585	0.3038	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	0.85	1	0.8623	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	61	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.5977	0.0098	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.98	1	0.6075	FALSE	344	821	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	233	MT-ND4	1789	chrM:11548:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	9385	3	0.02	0.99	0.0294	2.283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.02	0.99	2.3124	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	48	51	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12663	0	0.01	1	0.4703	0.4997	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.97	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	230	MT-ND4	1471	chrM:11230:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	401	3	0.37	0.99	0.0294	2.2536	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.37	0.99	2.283	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	56	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.5487	0.0686	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	0.97	1	0.6173	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	193	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	NO	52	2	0.79	0.99	0.0784	1.8911	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.79	0.99	1.9695	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	195	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	27	3	0.88	0.99	0.0686	1.9107	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.88	0.99	1.9793	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	197	MT-ND4	1466	chrM:11225:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	402	2	0.34	0.99	0.0588	1.9303	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.34	0.99	1.9891	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	34	75	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	18573	1	0.01	0.99	0.3331	0.7349	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.01	0.99	1.068	FALSE	328	800	43	304	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	190	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	26	2	0.88	0.99	0.0392	1.8617	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.88	0.99	1.9009	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	19	129	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1862	1.264	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	1.4502	FALSE	369	2501	205	193	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	188	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	94	1	0.67	0.99	0.0392	1.8421	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.67	0.99	1.8813	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	188	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	106	1	0.64	0.99	0.0392	1.8421	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.64	0.99	1.8813	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	142	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	39	1	0.8	0.99	0.098	1.3914	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.8	0.99	1.4894	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	140	MT-ND4	1144	chrM:10903:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	32	1	0.82	0.99	0.098	1.3718	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.82	0.99	1.4698	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	44	2	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4311	0.0196	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.4507	FALSE	51	280	19	36	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	146	MT-ND4	1294	chrM:11053:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	92	1	0.62	0.99	0.0294	1.4306	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.62	0.99	1.46	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	21	72	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	796	1	0.1	0.99	0.2058	0.7055	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.1	0.99	0.9113	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	16	91	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1568	0.8917	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	1.0485	FALSE	369	2501	205	193	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	28	42	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2744	0.4115	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.6859	FALSE	369	2501	205	193	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	100	MT-ND4	1209	chrM:10968:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	YES	52	1	0.68	0.99	0.0882	0.9798	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.68	0.99	1.068	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	34	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3331	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.3331	TRUE	519	3926	326	965	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	17	67	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1666	0.6565	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.8231	FALSE	369	2501	205	193	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	33	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3233	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.3233	FALSE	369	2501	205	193	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	95	MT-ND4	1117	chrM:10876:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	27	1	0.79	0.99	0.049	0.9309	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.79	0.99	0.9799	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	16	49	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	468	0	0.12	1	0.1568	0.4801	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.12	1	0.6369	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	11	68	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	76	1	0.51	0.99	0.1078	0.6663	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.51	0.99	0.7741	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	17	44	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1666	0.4311	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.5977	FALSE	369	2501	205	193	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	25	9	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.245	0.0882	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.3332	FALSE	462	80	0	856	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	48	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	52	0	0.55	1	0.147	0.4703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.55	1	0.6173	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	92	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	9	1	0.91	0.99	0.0294	0.9015	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.91	0.99	0.9309	FALSE	344	821	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	48	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	46	0	0.57	1	0.1372	0.4703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.57	1	0.6075	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	83	MT-ND4	1125	chrM:10884:+	MT-ND4L	5651	chrM:10742:+	INCL_NON_REF_SPLICE	YES	29	1	0.75	0.99	0.049	0.8133	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.75	0.99	0.8623	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	13	49	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	79	0	0.44	1	0.1274	0.4801	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.44	1	0.6075	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	68	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	52	1	0.59	0.99	0.0784	0.6663	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.59	0.99	0.7447	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	39	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	51	0	0.51	1	0.147	0.3821	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.51	1	0.5291	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	67	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	49	1	0.6	0.99	0.0784	0.6565	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.6	0.99	0.7349	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	79	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	7	2	0.92	0.98	0.049	0.7741	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.92	0.98	0.8231	FALSE	344	821	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	85	MT-ND4	1180	chrM:10939:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	NO	49	1	0.64	0.99	0.0294	0.8329	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.64	0.99	0.8623	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	74	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	14463	1	0.01	0.99	0.049	0.7251	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.01	0.99	0.7741	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	82	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	19	1	0.82	0.99	0.0294	0.8035	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.82	0.99	0.8329	FALSE	344	821	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	68	MT-ND4	1201	chrM:10960:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	59	1	0.55	0.99	0.049	0.6663	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.55	0.99	0.7153	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	11	44	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	16	0	0.77	1	0.1078	0.4311	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	0.77	1	0.5389	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	13	34	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.1274	0.3331	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.4605	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	48	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	78	0	0.42	1	0.0882	0.4703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.42	1	0.5585	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	24	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	87	0	0.31	1	0.147	0.2352	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.31	1	0.3822	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	21	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2058	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.2058	FALSE	462	80	0	856	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	17	13	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1666	0.1274	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.294	FALSE	462	80	0	856	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	68	MT-ND4	1209	chrM:10968:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	52	1	0.58	0.99	0.0294	0.6663	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.58	0.99	0.6957	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	67	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	39	1	0.64	0.99	0.0294	0.6565	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.64	0.99	0.6859	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	48	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	39	0	0.59	1	0.0686	0.4703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.59	1	0.5389	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	4	59	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0392	0.5781	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.6173	FALSE	369	2501	205	193	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	42	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	15	1	0.77	0.98	0.0686	0.4115	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.77	0.98	0.4801	FALSE	344	821	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	46	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	15	0	0.78	1	0.0588	0.4507	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	0.78	1	0.5095	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	46	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	15	0	0.78	1	0.0588	0.4507	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	0.78	1	0.5095	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	53	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	51	0	0.53	1	0.0392	0.5193	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.53	1	0.5585	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	48	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	32	0	0.62	1	0.049	0.4703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.62	1	0.5193	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	48	MT-ND4	1170	chrM:10929:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	42	0	0.56	1	0.049	0.4703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.56	1	0.5193	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	17	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1666	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.1666	FALSE	369	2501	205	193	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	50	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	896	0	0.06	1	0.0392	0.4899	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.06	1	0.5291	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	24	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	52	0	0.4	1	0.098	0.2352	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.3332	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	15	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.147	0.0392	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.1862	FALSE	416	2512	207	587	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	39	MT-ND4	1195	chrM:10954:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	52	0	0.46	1	0.0588	0.3821	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.46	1	0.4409	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	48	MT-ND4	1152	chrM:10911:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	34	0	0.6	1	0.0294	0.4703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.6	1	0.4997	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	7	32	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	166	0	0.19	1	0.0686	0.3136	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	0.19	1	0.3822	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	42	MT-ND4	1192	chrM:10951:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	51	0	0.47	1	0.0392	0.4115	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.47	1	0.4507	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	46	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	177	0	0.22	1	0.0294	0.4507	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	0.22	1	0.4801	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	14	0	MT-TC	1009	chrM:5818:-	MT-TY	4068	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1372	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.1372	FALSE	51	280	19	36	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	42	MT-ND4	1170	chrM:10929:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	42	0	0.52	1	0.0294	0.4115	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.52	1	0.4409	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	12	1	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1176	0.0098	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.1274	FALSE	369	2501	205	193	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	31	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	16	0	0.69	1	0.0392	0.3038	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	0.69	1	0.343	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	34	MT-ND4	1093	chrM:10852:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	23	0	0.62	1	0.0294	0.3331	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.62	1	0.3625	FALSE	344	826	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	11	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1078	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.1078	FALSE	51	280	19	36	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	23	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	87	0	0.24	1	0.049	0.2254	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.24	1	0.2744	FALSE	344	827	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	10	1	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.098	0.0098	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	0.92	1	0.1078	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	10	1	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.098	0.0098	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	0.85	1	0.1078	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	7	9	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0.0882	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.1568	FALSE	462	80	0	856	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	9	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0882	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0882	FALSE	369	2501	205	193	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0882	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0882	TRUE	0	0	0	434	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	6	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	13	1	0.5	0.93	0.0686	0.0588	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.5	0.93	0.1274	FALSE	344	821	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	8	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0784	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0784	FALSE	369	2501	205	193	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	ZFHX3--AC004158.2	8	0	ZFHX3	3793	chr16:73081651:-	AC004158.2	43012	chr16:72461356:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0784	0	ZFHX3->Oncogene{Bushman},chr16:72816784-73093597:-,zinc_finger_homeobox_3,AC004158.2->chr16:72459384-72698908:-	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	6	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	14	0	0.46	1	0.0588	0.0588	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.46	1	0.1176	FALSE	344	821	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	6	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.86	0.0588	0.0588	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR22_UPPER_AERODIGESTIVE_TRACT	0.86	1	0.1176	FALSE	344	821	44	306	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	5	10	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0.098	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.147	FALSE	462	80	0	856	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	5	9	MT-TA	1054	chrM:5602:-	MT-TC	4006	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0.0882	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.1372	FALSE	462	80	0	856	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	1	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0588	0.0098	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.0686	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0588	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0588	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0588	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0588	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	6	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0588	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0588	FALSE	51	280	19	36	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0588	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0588	TRUE	465	1949	224	605	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	5	2	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0.0196	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0686	FALSE	369	2501	205	193	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	1	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.049	0.0098	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	0.75	1	0.0588	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	5	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.049	FALSE	369	2501	205	193	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	5	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.049	FALSE	369	2501	205	193	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TW--MT-ND2	4	3	MT-TW	1004	chrM:5515:+	MT-ND2	4879	chrM:5280:+	INCL_NON_REF_SPLICE	YES	0	36	1	0.16	0.0392	0.0294	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	BICR22_UPPER_AERODIGESTIVE_TRACT	0.16	1	0.0686	FALSE	14	0	0	19	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	1	MT-ND6	1031	chrM:14643:-	MT-TE	4590	chrM:14678:-	INCL_NON_REF_SPLICE	NO	1	0	0.83	1	0.0392	0.0098	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	0.83	1	0.049	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0294	0.0392	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0686	FALSE	462	80	0	856	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0392	FALSE	292	1546	117	613	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	4	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0392	FALSE	515	4851	409	746	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	1	MT-ND6	1027	chrM:14647:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0294	0.0098	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0392	FALSE	499	1288	110	792	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	3	0	MT-TC	1030	chrM:5797:-	MT-TY	4098	chrM:5860:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0294	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0294	FALSE	51	280	19	36	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	3	0	MT-TC	1056	chrM:5771:-	MT-TY	4108	chrM:5850:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0294	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0294	FALSE	51	280	19	36	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	NCOR2--UBC	3	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0294	TRUE	145	312	16	51	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	MYH9--RBFOX2	2	1	MYH9	17767	chr22:36708094:-	RBFOX2	52730	chr22:36177793:-	ONLY_REF_SPLICE	YES	238	48	0.01	0.06	0.0196	0.0098	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,RBFOX2->RNA_binding_protein,_fox-1_homolog_2,chr22:36134783-36424473:-	BICR22_UPPER_AERODIGESTIVE_TRACT	0.01	0.06	0.0294	FALSE	0	0	0	1	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	NCOR2--UBC	2	1	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	46	86	0.06	0.03	0.0196	0.0098	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	BICR22_UPPER_AERODIGESTIVE_TRACT	0.03	0.06	0.0294	TRUE	52	148	13	33	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	IER2--B2M	2	0	IER2	1138	chr19:13261366:+	B2M	10533	chr15:45007621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	IER2->Oncogene{Bushman},chr19:13261229-13265722:+,immediate_early_response_2,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	BICR22_UPPER_AERODIGESTIVE_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	NCOR2--UBC	1	1	NCOR2	3484	chr12:125002686:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	6	86	0.25	0.02	0.0098	0.0098	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	BICR22_UPPER_AERODIGESTIVE_TRACT	0.02	0.25	0.0196	TRUE	7	26	3	12	0	FALSE	ACH-000794
BICR22_UPPER_AERODIGESTIVE_TRACT	ZMYM4--SFPQ	1	1	ZMYM4	3227	chr1:35791006:+	SFPQ	47595	chr1:35643637:-	ONLY_REF_SPLICE	NO	21	37	0.09	0.05	0.0098	0.0098	GTEx_FI:{Brain=[count:2=pct:0.3],Colon=[count:1=pct:0.5],Ovary=[count:1=pct:1.9]},LOCAL_INVERSION:+:-:[75819],ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	BICR22_UPPER_AERODIGESTIVE_TRACT	0.05	0.09	0.0196	TRUE	2	10	0	3	0	FALSE	ACH-000794
KPNYN_AUTONOMIC_GANGLIA	MAP3K10--C5AR1	115	41	MAP3K10	3151	chr19:40704462:+	C5AR1	20837	chr19:47823038:+	ONLY_REF_SPLICE	YES	15	1	0.91	0.99	1.6912	0.6029	MAP3K10->chr19:40697651-40721482:+,mitogen-activated_protein_kinase_kinase_kinase_10,C5AR1->chr19:47793280-47825323:+,complement_component_5a_receptor_1	KPNYN_AUTONOMIC_GANGLIA	0.91	0.99	2.2941	TRUE	0	0	0	1	0	TRUE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	ZNF654--HMGB2	117	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.7206	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KPNYN_AUTONOMIC_GANGLIA	1	1	1.7206	TRUE	0	0	0	518	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	102	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5	0.25	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KPNYN_AUTONOMIC_GANGLIA	1	1	1.75	TRUE	508	994	45	981	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	62	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	158	5	0.29	0.93	0.9118	0.0294	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KPNYN_AUTONOMIC_GANGLIA	0.29	0.93	0.9412	TRUE	519	3926	326	965	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	MT-TA--MT-TC	29	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4265	0.0294	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KPNYN_AUTONOMIC_GANGLIA	1	1	0.4559	FALSE	462	80	0	856	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	26	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.83	0.3823	0.1176	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KPNYN_AUTONOMIC_GANGLIA	0.83	1	0.4999	TRUE	458	1351	185	561	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	MAP3K10--C5AR1	14	43	MAP3K10	3151	chr19:40704462:+	C5AR1	19722	chr19:47819726:+	ONLY_REF_SPLICE	YES	15	0	0.79	1	0.2059	0.6323	MAP3K10->chr19:40697651-40721482:+,mitogen-activated_protein_kinase_kinase_kinase_10,C5AR1->chr19:47793280-47825323:+,complement_component_5a_receptor_1	KPNYN_AUTONOMIC_GANGLIA	0.79	1	0.8382	TRUE	0	0	0	1	0	TRUE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	16	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	58	1	0.28	0.2353	0.0882	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KPNYN_AUTONOMIC_GANGLIA	0.28	1	0.3235	TRUE	465	1949	224	605	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	PCDH15--RP11-168O22.1	15	2	PCDH15	1318	chr10:57387385:-	RP11-168O22.1	68273	chr10:57335471:-	ONLY_REF_SPLICE	YES	6	0	0.74	1	0.2206	0.0294	GTEx_FI:{Adrenal_Gland=[count:35=pct:41.2],Pituitary=[count:2=pct:3.8],Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3]},PCDH15->chr10:55562531-57387702:-,protocadherin-related_15,RP11-168O22.1->chr10:57007515-57356993:-	KPNYN_AUTONOMIC_GANGLIA	0.74	1	0.25	TRUE	32	58	0	7	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	11	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1618	0.1324	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPNYN_AUTONOMIC_GANGLIA	0.95	1	0.2942	FALSE	499	1288	110	792	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	AP003900.6--RP11-417J8.3	13	0	AP003900.6	1122	chr21:11169841:+	RP11-417J8.3	9877	chr1:142621001:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1912	0	AP003900.6->chr21:11169720-11184046:+,RP11-417J8.3->chr1:142618769-142729975:+	KPNYN_AUTONOMIC_GANGLIA	1	1	0.1912	TRUE	0	0	0	2	0	TRUE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	ZNF654--HMGB2	13	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1912	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KPNYN_AUTONOMIC_GANGLIA	1	1	0.1912	TRUE	0	0	0	518	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	RP11-123O10.4--GRIP1	11	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1618	0.0147	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KPNYN_AUTONOMIC_GANGLIA	1	1	0.1765	FALSE	416	2512	207	587	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1618	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KPNYN_AUTONOMIC_GANGLIA	1	1	0.1618	TRUE	0	0	0	434	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	10	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1471	0.0441	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPNYN_AUTONOMIC_GANGLIA	1	1	0.1912	FALSE	499	1288	110	792	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	IGKV2-40--IGKJ4	9	0	IGKV2-40	1300	chr2:89629887:-	IGKJ4	4319	chr2:89160430:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1324	0	GTEx_FI:{Thyroid=[count:2=pct:1.1],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3]},HGNC_GENEFAM,IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	KPNYN_AUTONOMIC_GANGLIA	1	1	0.1324	FALSE	7	34	0	4	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	8	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1176	0.0294	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPNYN_AUTONOMIC_GANGLIA	1	1	0.147	FALSE	499	1288	110	792	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	MT-TA--MT-TC	7	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1029	0.0294	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KPNYN_AUTONOMIC_GANGLIA	1	1	0.1323	FALSE	462	80	0	856	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1029	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KPNYN_AUTONOMIC_GANGLIA	1	1	0.1029	FALSE	462	80	0	856	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	MT-ND1--MT-RNR2	5	6	MT-ND1	1264	chrM:3570:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	113	0	0.09	1	0.0735	0.0882	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KPNYN_AUTONOMIC_GANGLIA	0.09	1	0.1617	FALSE	114	26	4	85	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	14	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0441	0.2059	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPNYN_AUTONOMIC_GANGLIA	0.94	1	0.25	FALSE	499	1288	110	792	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	AP003900.6--RP11-417J8.3	6	0	AP003900.6	3299	chr21:11174002:+	RP11-417J8.3	9877	chr1:142621001:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0882	0	AP003900.6->chr21:11169720-11184046:+,RP11-417J8.3->chr1:142618769-142729975:+	KPNYN_AUTONOMIC_GANGLIA	1	1	0.0882	TRUE	0	0	0	2	0	TRUE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	MT-ND1--MT-RNR2	4	6	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	113	7646	0.08	0	0.0588	0.0882	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KPNYN_AUTONOMIC_GANGLIA	0	0.08	0.147	FALSE	120	26	5	87	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	APP--MT-CO3	5	1	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	1116	9019	0.01	0	0.0735	0.0147	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	KPNYN_AUTONOMIC_GANGLIA	0	0.01	0.0882	FALSE	0	0	0	26	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	MT-ND1--MT-RNR2	3	9	MT-ND1	1435	chrM:3741:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	117	0	0.09	1	0.0441	0.1324	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KPNYN_AUTONOMIC_GANGLIA	0.09	1	0.1765	FALSE	114	26	4	85	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	4	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0588	0.0588	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KPNYN_AUTONOMIC_GANGLIA	1	1	0.1176	TRUE	477	1352	189	275	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	4	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.35	1	0.0588	0.0441	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KPNYN_AUTONOMIC_GANGLIA	0.35	1	0.1029	FALSE	164	806	69	479	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	4	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.43	1	0.0588	0.0294	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KPNYN_AUTONOMIC_GANGLIA	0.43	1	0.0882	FALSE	125	705	46	456	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0588	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KPNYN_AUTONOMIC_GANGLIA	1	1	0.0588	FALSE	292	1546	117	613	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	MAP3K10--C5AR1	2	6	MAP3K10	1970	chr19:40698620:+	C5AR1	20837	chr19:47823038:+	ONLY_REF_SPLICE	YES	46	1	0.15	0.89	0.0294	0.0882	MAP3K10->chr19:40697651-40721482:+,mitogen-activated_protein_kinase_kinase_kinase_10,C5AR1->chr19:47793280-47825323:+,complement_component_5a_receptor_1	KPNYN_AUTONOMIC_GANGLIA	0.15	0.89	0.1176	TRUE	0	0	0	1	0	TRUE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	6	0.8	0.4	0.0441	0.0147	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KPNYN_AUTONOMIC_GANGLIA	0.4	0.8	0.0588	FALSE	16	356	14	466	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KPNYN_AUTONOMIC_GANGLIA	1	1	0.0441	TRUE	0	0	0	434	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	3	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0441	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KPNYN_AUTONOMIC_GANGLIA	1	1	0.0441	TRUE	62	24	1	171	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	ZNF738--CHMP1A	3	0	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0441	0	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	KPNYN_AUTONOMIC_GANGLIA	1	1	0.0441	TRUE	1	20	1	28	3	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	KCNQ5-IT1--KCNQ5	2	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	KPNYN_AUTONOMIC_GANGLIA	1	1	0.0294	FALSE	1	11	0	34	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	RP11-657O9.1--ERC1	2	0	RP11-657O9.1	2719	chr3:135098104:-	ERC1	29089	chr12:1345935:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	RP11-657O9.1->chr3:135074909-135158730:-,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	KPNYN_AUTONOMIC_GANGLIA	1	1	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0147	0.0441	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KPNYN_AUTONOMIC_GANGLIA	1	1	0.0588	TRUE	274	363	69	150	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	1	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	20	0	0.13	1	0.0147	0.0294	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	KPNYN_AUTONOMIC_GANGLIA	0.13	1	0.0441	FALSE	56	216	12	147	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	CLASP2--STAC	1	1	CLASP2	12994	chr3:33686249:-	STAC	65710	chr3:36484856:+	ONLY_REF_SPLICE	NO	148	99	0.01	0.02	0.0147	0.0147	CLASP2->chr3:33537737-33759848:-,cytoplasmic_linker_associated_protein_2,STAC->SH3_and_cysteine_rich_domain,chr3:36421836-36589499:+	KPNYN_AUTONOMIC_GANGLIA	0.01	0.02	0.0294	FALSE	0	0	0	1	0	FALSE	ACH-000227
KPNYN_AUTONOMIC_GANGLIA	PCDH15--RP11-168O22.1	1	1	PCDH15	1318	chr10:57387385:-	RP11-168O22.1	70457	chr10:57007648:-	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0147	0.0147	GTEx_FI:{Adrenal_Gland=[count:35=pct:41.2],Pituitary=[count:2=pct:3.8],Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3]},PCDH15->chr10:55562531-57387702:-,protocadherin-related_15,RP11-168O22.1->chr10:57007515-57356993:-	KPNYN_AUTONOMIC_GANGLIA	0.25	1	0.0294	TRUE	24	53	0	5	0	FALSE	ACH-000227
NCIH661_LUNG	PLD3--BLVRB	76	65	PLD3	9800	chr19:40880527:+	BLVRB	20542	chr19:40957399:-	ONLY_REF_SPLICE	YES	318	197	0.31	0.42	1.0361	0.8861	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:+:-:[67350],PLD3->chr19:40854363-40886346:+,phospholipase_D_family_member_3,BLVRB->biliverdin_reductase_B,chr19:40953696-40971747:-	NCIH661_LUNG	0.31	0.42	1.9222	TRUE	0	1	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	MT-TA--MT-TC	33	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4499	0.0545	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH661_LUNG	1	1	0.5044	FALSE	462	80	0	856	0	FALSE	ACH-000853
NCIH661_LUNG	TIMM23B--LINC00843	25	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.3408	0.1772	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH661_LUNG	0.97	1	0.518	TRUE	508	994	45	981	0	FALSE	ACH-000853
NCIH661_LUNG	LARS2--KIF15	20	0	LARS2	1175	chr3:45430172:+	KIF15	53578	chr3:44867531:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2727	0	LARS2->chr3:45429998-45590913:+,leucyl-tRNA_synthetase_2,_mitochondrial,KIF15->chr3:44803209-44914868:+,kinesin_family_member_15	NCIH661_LUNG	1	1	0.2727	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	MT-ND6--MT-TE	19	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.259	0.0136	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH661_LUNG	1	1	0.2726	FALSE	499	1288	110	792	0	FALSE	ACH-000853
NCIH661_LUNG	PLXDC1--TAF13	19	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.259	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH661_LUNG	1	1	0.259	TRUE	7	10	0	216	0	FALSE	ACH-000853
NCIH661_LUNG	JAGN1--ARPC4	16	9	JAGN1	2476	chr3:9934710:+	ARPC4	8487	chr3:9839343:+	INCL_NON_REF_SPLICE	YES	114	32	0.18	0.44	0.2181	0.1227	LOCAL_REARRANGEMENT:+:[82828],JAGN1->chr3:9932238-9936033:+,jagunal_homolog_1,ARPC4->actin_related_protein_2/3_complex_subunit_4,chr3:9834179-9849410:+	NCIH661_LUNG	0.18	0.44	0.3408	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	TIMM23--RP11-464F9.1	16	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	130	4	0.12	0.81	0.2181	0.0136	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH661_LUNG	0.12	0.81	0.2317	TRUE	519	3926	326	965	0	FALSE	ACH-000853
NCIH661_LUNG	RP11-344E13.3--UBBP4	8	29	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	67	0	0.36	1	0.1091	0.3953	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	NCIH661_LUNG	0.36	1	0.5044	TRUE	23	13	0	54	0	FALSE	ACH-000853
NCIH661_LUNG	C15orf57--CBX3	11	15	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	19	39	0.58	0.4	0.15	0.2045	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH661_LUNG	0.4	0.58	0.3545	TRUE	267	562	48	632	0	FALSE	ACH-000853
NCIH661_LUNG	NDST3--USP53	13	5	NDST3	9423	chr4:119064839:+	USP53	34835	chr4:120166492:+	ONLY_REF_SPLICE	YES	4	30	0.82	0.38	0.1772	0.0682	NDST3->N-deacetylase/N-sulfotransferase_3,chr4:118954773-119179803:+,USP53->chr4:120133742-120216672:+,ubiquitin_specific_peptidase_53	NCIH661_LUNG	0.38	0.82	0.2454	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	MT-ND6--MT-TE	12	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.1636	0.1091	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH661_LUNG	0.91	1	0.2727	FALSE	499	1288	110	792	0	FALSE	ACH-000853
NCIH661_LUNG	PLD3--BLVRB	7	28	PLD3	8660	chr19:40877780:+	BLVRB	20542	chr19:40957399:-	ONLY_REF_SPLICE	YES	339	197	0.09	0.15	0.0954	0.3817	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:+:-:[67350],PLD3->chr19:40854363-40886346:+,phospholipase_D_family_member_3,BLVRB->biliverdin_reductase_B,chr19:40953696-40971747:-	NCIH661_LUNG	0.09	0.15	0.4771	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	MT-ND6--MT-TE	12	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1636	0.0136	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH661_LUNG	1	1	0.1772	FALSE	499	1288	110	792	0	FALSE	ACH-000853
NCIH661_LUNG	MT-CO1--COL3A1	11	0	MT-CO1	1605	chrM:6508:+	COL3A1	28798	chr2:189872273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.15	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	NCIH661_LUNG	1	1	0.15	FALSE	0	0	0	12	0	FALSE	ACH-000853
NCIH661_LUNG	OR51S1--TP53I11	10	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1363	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH661_LUNG	1	1	0.1363	TRUE	402	216	10	229	0	FALSE	ACH-000853
NCIH661_LUNG	DPH7--PTP4A3	8	0	DPH7	1297	chr9:140473091:-	PTP4A3	14726	chr8:142431487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1091	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:10=pct:2.7],Heart=[count:7=pct:2.8],Pituitary=[count:4=pct:7.7],Nerve=[count:2=pct:1.2],Esophagus=[count:2=pct:0.5],Colon=[count:2=pct:1.0],Lung=[count:2=pct:1.2],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Kidney=[count:1=pct:7.1],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},GTEx_v2:{count=46;pct=0.53%;dist=Artery_-_Tibial=9,Heart_-_Atrial_Appendage=9,Pituitary=6,Cells_-_EBV-transformed_lymphocytes=5,Artery_-_Aorta=3,Lung=2,Artery_-_Coronary=2,Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hypothalamus=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1,Testis=1},DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7,PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3	NCIH661_LUNG	1	1	0.1091	TRUE	29	213	5	17	0	FALSE	ACH-000853
NCIH661_LUNG	MT-ATP6--MT-CO1	8	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1091	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH661_LUNG	1	1	0.1091	FALSE	183	104	9	328	0	FALSE	ACH-000853
NCIH661_LUNG	ARL15--HMGN3	6	7	ARL15	1151	chr5:53606262:-	HMGN3	14603	chr6:79924739:-	ONLY_REF_SPLICE	YES	9	295	0.59	0.04	0.0818	0.0954	ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,HMGN3->chr6:79910962-79944406:-,high_mobility_group_nucleosomal_binding_domain_3	NCIH661_LUNG	0.04	0.59	0.1772	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	UBR2--RP11-415C15.2	7	2	UBR2	4789	chr6:42562042:+	RP11-415C15.2	57433	chr4:27278487:+	ONLY_REF_SPLICE	YES	28	0	0.24	1	0.0954	0.0273	NUCLCLUST,UBR2->chr6:42531800-42661242:+,ubiquitin_protein_ligase_E3_component_n-recognin_2,RP11-415C15.2->chr4:27219101-27283847:+	NCIH661_LUNG	0.24	1	0.1227	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	MT-CO2--MT-CO1	6	5	MT-CO2	1493	chrM:8078:+	MT-CO1	5625	chrM:6844:+	INCL_NON_REF_SPLICE	YES	2	8131	0.85	0	0.0818	0.0682	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH661_LUNG	0	0.85	0.15	FALSE	36	10	0	27	0	FALSE	ACH-000853
NCIH661_LUNG	MT-TA--MT-TC	6	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0818	0.0545	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH661_LUNG	1	1	0.1363	FALSE	462	80	0	856	0	FALSE	ACH-000853
NCIH661_LUNG	CALM3--MT-ND4L	6	2	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	808	0	0.01	1	0.0818	0.0273	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH661_LUNG	0.01	1	0.1091	FALSE	1	1	0	107	0	FALSE	ACH-000853
NCIH661_LUNG	MT-ND6--MT-TE	4	10	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0545	0.1363	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH661_LUNG	0.88	1	0.1908	FALSE	499	1288	110	792	0	FALSE	ACH-000853
NCIH661_LUNG	PRR16--CTD-2334D19.1	5	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	55	0	0.15	1	0.0682	0.0682	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH661_LUNG	0.15	1	0.1364	FALSE	56	216	12	147	0	FALSE	ACH-000853
NCIH661_LUNG	C15orf57--CBX3	3	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	18	39	0.45	0.28	0.0409	0.1636	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH661_LUNG	0.28	0.45	0.2045	TRUE	267	562	48	632	0	FALSE	ACH-000853
NCIH661_LUNG	PPAP2A--SLC38A9	5	3	PPAP2A	9211	chr5:54721015:-	SLC38A9	18584	chr5:54993820:-	INCL_NON_REF_SPLICE	YES	91	16	0.08	0.33	0.0682	0.0409	LOCAL_REARRANGEMENT:-:[90795],PPAP2A->chr5:54720682-54830878:-,SLC38A9->chr5:54921673-55069022:-,solute_carrier_family_38_member_9	NCIH661_LUNG	0.08	0.33	0.1091	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	MT-ATP6--MT-CO2	5	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	31	4	0.18	0.64	0.0682	0.0273	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH661_LUNG	0.18	0.64	0.0955	FALSE	59	21	0	114	0	FALSE	ACH-000853
NCIH661_LUNG	PLD3--BLVRB	3	9	PLD3	8660	chr19:40877780:+	BLVRB	21671	chr19:40953953:-	ONLY_REF_SPLICE	YES	339	150	0.03	0.07	0.0409	0.1227	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:+:-:[67350],PLD3->chr19:40854363-40886346:+,phospholipase_D_family_member_3,BLVRB->biliverdin_reductase_B,chr19:40953696-40971747:-	NCIH661_LUNG	0.03	0.07	0.1636	TRUE	0	1	0	1	0	FALSE	ACH-000853
NCIH661_LUNG	LIMS2--SAP130	4	4	LIMS2	9139	chr2:128411998:-	SAP130	41670	chr2:128703133:-	ONLY_REF_SPLICE	YES	23	54	0.26	0.13	0.0545	0.0545	LIMS2->LIM_zinc_finger_domain_containing_2,chr2:128395956-128439360:-,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	NCIH661_LUNG	0.13	0.26	0.109	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	NDST3--USP53	3	7	NDST3	9423	chr4:119064839:+	USP53	33149	chr4:120160373:+	ONLY_REF_SPLICE	YES	4	26	0.71	0.28	0.0409	0.0954	NDST3->N-deacetylase/N-sulfotransferase_3,chr4:118954773-119179803:+,USP53->chr4:120133742-120216672:+,ubiquitin_specific_peptidase_53	NCIH661_LUNG	0.28	0.71	0.1363	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	UHRF2--KDM4C	4	3	UHRF2	5854	chr9:6434173:+	KDM4C	45943	chr9:6980925:+	ONLY_REF_SPLICE	YES	11	6	0.39	0.54	0.0545	0.0409	UHRF2->Oncogene{Bushman},chr9:6413151-6507054:+,ubiquitin_like_with_PHD_and_ring_finger_domains_2,KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C	NCIH661_LUNG	0.39	0.54	0.0954	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	MT-CO2--MT-CO1	3	6	MT-CO2	1278	chrM:7863:+	MT-CO1	5338	chrM:6557:+	INCL_NON_REF_SPLICE	YES	7	20793	0.56	0	0.0409	0.0818	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH661_LUNG	0	0.56	0.1227	FALSE	36	10	0	27	0	FALSE	ACH-000853
NCIH661_LUNG	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	19	1	0.24	0.0545	0.0273	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH661_LUNG	0.24	1	0.0818	TRUE	458	1351	185	561	0	FALSE	ACH-000853
NCIH661_LUNG	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	50	1	0.09	0.0545	0.0136	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH661_LUNG	0.09	1	0.0681	TRUE	465	1949	224	605	0	FALSE	ACH-000853
NCIH661_LUNG	MT-ATP6--MT-CO1	3	4	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	1969	20794	0	0	0.0409	0.0545	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH661_LUNG	0	0	0.0954	FALSE	183	104	9	328	0	FALSE	ACH-000853
NCIH661_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0545	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH661_LUNG	1	1	0.0545	FALSE	499	1288	110	792	0	FALSE	ACH-000853
NCIH661_LUNG	PPAP2A--SLC38A9	3	4	PPAP2A	9253	chr5:54720973:-	SLC38A9	18584	chr5:54993820:-	INCL_NON_REF_SPLICE	YES	102	16	0.06	0.3	0.0409	0.0545	LOCAL_REARRANGEMENT:-:[90795],PPAP2A->chr5:54720682-54830878:-,SLC38A9->chr5:54921673-55069022:-,solute_carrier_family_38_member_9	NCIH661_LUNG	0.06	0.3	0.0954	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0409	0.0409	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH661_LUNG	0.86	1	0.0818	FALSE	407	2205	196	549	0	FALSE	ACH-000853
NCIH661_LUNG	MT-ATP6--MT-CO2	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	31	4	0.14	0.56	0.0409	0.0273	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH661_LUNG	0.14	0.56	0.0682	FALSE	59	21	0	114	0	FALSE	ACH-000853
NCIH661_LUNG	DDX27--AC007796.1	3	1	DDX27	16825	chr20:47859218:+	AC007796.1	24701	chr19:31908620:+	INCL_NON_REF_SPLICE	YES	89	0	0.04	1	0.0409	0.0136	DDX27->DEAD-box_helicase_27,chr20:47835884-47860614:+,AC007796.1->chr19:31839787-31908700:+	NCIH661_LUNG	0.04	1	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	GDAP1--RP11-758M4.1	3	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	17	1	0.19	0.8	0.0409	0.0136	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH661_LUNG	0.19	0.8	0.0545	TRUE	7	28	0	43	0	FALSE	ACH-000853
NCIH661_LUNG	MT-ATP6--MT-CO2	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	9	4	0.31	0.5	0.0409	0.0136	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH661_LUNG	0.31	0.5	0.0545	FALSE	59	21	0	114	0	FALSE	ACH-000853
NCIH661_LUNG	NRIP1--AF127936.7	3	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.29	1	0.0409	0.0136	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH661_LUNG	0.29	1	0.0545	FALSE	164	806	69	479	0	FALSE	ACH-000853
NCIH661_LUNG	CEP135--RP11-725D20.1	3	0	CEP135	13385	chr4:56837574:+	RP11-725D20.1	35970	chr4:60460197:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0409	0	CEP135->centrosomal_protein_135,chr4:56815037-56899529:+,RP11-725D20.1->chr4:60416860-60496042:-	NCIH661_LUNG	1	1	0.0409	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	COL11A1--IVNS1ABP	3	0	COL11A1	4969	chr1:103540174:-	IVNS1ABP	70014	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0409	0	{Klijn_CCL:Lung=1},COL11A1->Oncogene{Bushman},chr1:103342023-103574052:-,collagen_type_XI_alpha_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NCIH661_LUNG	1	1	0.0409	TRUE	0	0	0	3	0	TRUE	ACH-000853
NCIH661_LUNG	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH661_LUNG	1	1	0.0409	FALSE	462	80	0	856	0	FALSE	ACH-000853
NCIH661_LUNG	PVT1--SNTB1	3	0	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0409	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH661_LUNG	1	1	0.0409	TRUE	0	0	0	25	0	FALSE	ACH-000853
NCIH661_LUNG	VIM--RPLP2	3	0	VIM	2100	chr10:17271357:+	RPLP2	12525	chr11:809967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0	VIM->chr10:17270258-17279592:+,vimentin,RPLP2->chr11:809647-812880:+,ribosomal_protein_lateral_stalk_subunit_P2	NCIH661_LUNG	1	1	0.0409	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	DTNB--KLHL29	2	3	DTNB	14527	chr2:25799707:-	KLHL29	42238	chr2:23785022:+	ONLY_REF_SPLICE	YES	23	1	0.18	0.83	0.0273	0.0409	DTNB->chr2:25600067-25896503:-,dystrobrevin_beta,KLHL29->chr2:23608088-23931481:+,kelch_like_family_member_29	NCIH661_LUNG	0.18	0.83	0.0682	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	RP11-476K15.1--CTD-2015H3.2	2	2	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0273	0.0273	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCIH661_LUNG	0.19	1	0.0546	FALSE	0	46	0	73	0	FALSE	ACH-000853
NCIH661_LUNG	DDHD1--KIAA0586	2	1	DDHD1	8217	chr14:53558503:-	KIAA0586	62401	chr14:58979240:+	ONLY_REF_SPLICE	YES	21	17	0.12	0.15	0.0273	0.0136	DDHD1->DDHD_domain_containing_1,chr14:53510686-53620000:-,KIAA0586->KIAA0586,chr14:58894103-59015216:+	NCIH661_LUNG	0.12	0.15	0.0409	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	PRR16--CTD-2334D19.1	1	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	55	0	0.1	1	0.0136	0.0682	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH661_LUNG	0.1	1	0.0818	FALSE	1	13	0	24	0	FALSE	ACH-000853
NCIH661_LUNG	RP11-384J4.2--AKAP6	2	1	RP11-384J4.2	7775	chr14:27603244:+	AKAP6	37568	chr14:33204864:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0273	0.0136	RP11-384J4.2->chr14:27305934-27629626:+,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	NCIH661_LUNG	0.75	1	0.0409	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	AC006486.9--CIC	2	0	AC006486.9	1155	chr19:42759130:-	CIC	16389	chr19:42790923:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	GTEx_FI:{Lung=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Lung=1},LOCAL_INVERSION:-:+:[13405],AC006486.9->chr19:42738735-42759284:-,CIC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},capicua_transcriptional_repressor,chr19:42772689-42799949:+	NCIH661_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	HPCA--FGGY	2	0	HPCA	4027	chr1:33359230:+	FGGY	17281	chr1:59805630:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	HPCA->chr1:33351595-33364042:+,hippocalcin,FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+	NCIH661_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH661_LUNG	1	1	0.0273	FALSE	292	1546	117	613	0	FALSE	ACH-000853
NCIH661_LUNG	RP1-34H18.1--NAV3	2	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH661_LUNG	1	1	0.0273	TRUE	254	575	65	124	0	FALSE	ACH-000853
NCIH661_LUNG	TNIP2--RPL22	2	0	TNIP2	5696	chr4:2746114:-	RPL22	16493	chr1:6257816:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	TNIP2->TNFAIP3_interacting_protein_2,chr4:2743375-2758103:-,RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22	NCIH661_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	WDR45--GGNBP2	2	0	WDR45	1589	chrX:48957520:-	GGNBP2	22884	chr17:34934413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	WDR45->WD_repeat_domain_45,chrX:48929385-48958108:-,GGNBP2->chr17:34900737-34946278:+,gametogenetin_binding_protein_2	NCIH661_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	BTBD9--SSPN	1	2	BTBD9	10076	chr6:38545376:-	SSPN	33582	chr12:26377226:+	ONLY_REF_SPLICE	YES	6	1	0.33	0.75	0.0136	0.0273	BTBD9->BTB_domain_containing_9,chr6:38136227-38607924:-,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	NCIH661_LUNG	0.33	0.75	0.0409	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH661_LUNG	PLD3--BLVRB	1	2	PLD3	7024	chr19:40876144:+	BLVRB	21671	chr19:40953953:-	ONLY_REF_SPLICE	YES	349	150	0.01	0.02	0.0136	0.0273	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:+:-:[67350],PLD3->chr19:40854363-40886346:+,phospholipase_D_family_member_3,BLVRB->biliverdin_reductase_B,chr19:40953696-40971747:-	NCIH661_LUNG	0.01	0.02	0.0409	FALSE	0	0	0	1	0	FALSE	ACH-000853
NCIH661_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	1	0.75	0.75	0.0136	0.0273	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH661_LUNG	0.75	0.75	0.0409	FALSE	515	4851	409	746	0	FALSE	ACH-000853
NCIH661_LUNG	LPHN2--PKN2	1	1	LPHN2	11453	chr1:82302742:+	PKN2	49789	chr1:89250322:+	ONLY_REF_SPLICE	YES	139	76	0.01	0.03	0.0136	0.0136	LPHN2->Oncogene{Bushman},chr1:81771845-82458120:+,PKN2->chr1:89149905-89301938:+,protein_kinase_N2	NCIH661_LUNG	0.01	0.03	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000853
NCIH661_LUNG	PBX3--MAPKAP1	1	1	PBX3	2279	chr9:128510902:+	MAPKAP1	25785	chr9:128420078:-	ONLY_REF_SPLICE	NO	59	119	0.03	0.02	0.0136	0.0136	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	NCIH661_LUNG	0.02	0.03	0.0272	TRUE	0	0	0	3	0	FALSE	ACH-000853
NCIH661_LUNG	PLEKHA1--HELLS	1	1	PLEKHA1	7277	chr10:124157490:+	HELLS	41689	chr10:96336419:+	ONLY_REF_SPLICE	YES	30	34	0.06	0.06	0.0136	0.0136	PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1,HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific	NCIH661_LUNG	0.06	0.06	0.0272	TRUE	0	0	0	1	0	FALSE	ACH-000853
NCIH661_LUNG	UHRF2--KDM4C	1	1	UHRF2	3249	chr9:6421142:+	KDM4C	45943	chr9:6980925:+	ONLY_REF_SPLICE	YES	19	6	0.1	0.25	0.0136	0.0136	UHRF2->Oncogene{Bushman},chr9:6413151-6507054:+,ubiquitin_like_with_PHD_and_ring_finger_domains_2,KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C	NCIH661_LUNG	0.1	0.25	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000853
NCIH3255_LUNG	PLXNB2--DENND6B	573	16	PLXNB2	1075	chr22:50745982:-	DENND6B	24212	chr22:50757432:-	ONLY_REF_SPLICE	YES	30	21	0.95	0.97	4.6248	0.1291	LOCAL_REARRANGEMENT:-:[1403],PLXNB2->chr22:50713408-50746056:-,plexin_B2,DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-	NCIH3255_LUNG	0.95	0.97	4.7539	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	MT-TA--MT-TN	161	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2995	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH3255_LUNG	1	1	1.2995	FALSE	369	2501	205	193	0	FALSE	ACH-000109
NCIH3255_LUNG	EDEM1--ARL8B	145	36	EDEM1	1669	chr3:5229999:+	ARL8B	24923	chr3:5212188:+	ONLY_REF_SPLICE	YES	60	264	0.75	0.41	1.1703	0.2906	LOCAL_REARRANGEMENT:+:[6735],EDEM1->ER_degradation_enhancing_alpha-mannosidase_like_protein_1,chr3:5229331-5261642:+,ARL8B->ADP_ribosylation_factor_like_GTPase_8B,chr3:5163905-5222596:+	NCIH3255_LUNG	0.41	0.75	1.4609	TRUE	0	0	0	2	0	TRUE	ACH-000109
NCIH3255_LUNG	TIMM23B--LINC00843	131	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0573	0.1614	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH3255_LUNG	1	1	1.2187	TRUE	508	994	45	981	0	FALSE	ACH-000109
NCIH3255_LUNG	TMEM164--SH3BGRL	113	45	TMEM164	8254	chrX:109414748:+	SH3BGRL	21156	chrX:80532483:+	ONLY_REF_SPLICE	YES	105	4	0.6	0.98	0.912	0.3632	TMEM164->chrX:109245859-109425962:+,transmembrane_protein_164,SH3BGRL->SH3_domain_binding_glutamate_rich_protein_like,chrX:80457442-80554046:+	NCIH3255_LUNG	0.6	0.98	1.2752	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	PLXNB2--DENND6B	76	52	PLXNB2	2191	chr22:50739776:-	DENND6B	24212	chr22:50757432:-	ONLY_REF_SPLICE	YES	85	21	0.6	0.86	0.6134	0.4197	LOCAL_REARRANGEMENT:-:[1403],PLXNB2->chr22:50713408-50746056:-,plexin_B2,DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-	NCIH3255_LUNG	0.6	0.86	1.0331	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	TIMM23--RP11-464F9.1	88	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	137	0	0.4	1	0.7103	0.0323	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH3255_LUNG	0.4	1	0.7426	TRUE	519	3926	326	965	0	FALSE	ACH-000109
NCIH3255_LUNG	OR51S1--TP53I11	81	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6538	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH3255_LUNG	1	1	0.6538	TRUE	402	216	10	229	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-TA--MT-TC	71	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5731	0.0807	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH3255_LUNG	1	1	0.6538	FALSE	462	80	0	856	0	FALSE	ACH-000109
NCIH3255_LUNG	PHF12--MAPT	63	7	PHF12	1877	chr17:27277913:-	MAPT	44270	chr17:44068826:+	ONLY_REF_SPLICE	YES	11	1	0.86	0.99	0.5085	0.0565	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MAPT->chr17:43971748-44105700:+,microtubule_associated_protein_tau	NCIH3255_LUNG	0.86	0.99	0.565	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-CO1	64	1	MT-ND4	1205	chrM:10964:+	MT-CO1	5695	chrM:6220:+	INCL_NON_REF_SPLICE	YES	10114	15095	0.01	0	0.5166	0.0081	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	0	0.01	0.5247	FALSE	19	89	11	16	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND6--MT-TE	61	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4923	0.0242	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3255_LUNG	1	1	0.5165	FALSE	499	1288	110	792	0	FALSE	ACH-000109
NCIH3255_LUNG	SLC25A53--MCTS1	42	5	SLC25A53	1150	chrX:103401559:-	MCTS1	16331	chrX:119739262:+	ONLY_REF_SPLICE	YES	2	535	0.96	0.08	0.339	0.0404	SLC25A53->chrX:103343898-103401708:-,solute_carrier_family_25_member_53,MCTS1->chrX:119727865-119754929:+,malignant_T-cell_amplified_sequence_1	NCIH3255_LUNG	0.08	0.96	0.3794	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	RP11-59N23.1--CMAS	37	10	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	9	92	0.84	0.34	0.2986	0.0807	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH3255_LUNG	0.34	0.84	0.3793	TRUE	21	102	17	28	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-TA--MT-TN	14	98	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.113	0.791	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH3255_LUNG	1	1	0.904	FALSE	369	2501	205	193	0	FALSE	ACH-000109
NCIH3255_LUNG	TMEM164--SH3BGRL	24	50	TMEM164	9463	chrX:109416681:+	SH3BGRL	21156	chrX:80532483:+	ONLY_REF_SPLICE	YES	92	4	0.45	0.95	0.1937	0.4036	TMEM164->chrX:109245859-109425962:+,transmembrane_protein_164,SH3BGRL->SH3_domain_binding_glutamate_rich_protein_like,chrX:80457442-80554046:+	NCIH3255_LUNG	0.45	0.95	0.5973	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	DIP2B--PPHLN1	31	11	DIP2B	5613	chr12:51054102:+	PPHLN1	54056	chr12:42729685:+	ONLY_REF_SPLICE	YES	39	24	0.52	0.64	0.2502	0.0888	DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B,PPHLN1->chr12:42632249-42853517:+,periphilin_1	NCIH3255_LUNG	0.52	0.64	0.339	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-ND1	33	0	MT-ND4	1480	chrM:11239:+	MT-ND1	5862	chrM:3790:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2663	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH3255_LUNG	1	1	0.2663	FALSE	51	52	3	16	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-TA--MT-TN	31	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2502	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH3255_LUNG	1	1	0.2502	FALSE	369	2501	205	193	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND6--MT-TE	29	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2341	0.0242	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3255_LUNG	1	1	0.2583	FALSE	499	1288	110	792	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND6--MT-TE	23	19	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1856	0.1534	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3255_LUNG	1	1	0.339	FALSE	499	1288	110	792	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-TA--MT-TN	14	51	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.113	0.4116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH3255_LUNG	1	1	0.5246	FALSE	369	2501	205	193	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-TA--MT-TN	25	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2018	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH3255_LUNG	1	1	0.2018	FALSE	369	2501	205	193	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-TA--MT-TN	17	28	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1372	0.226	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH3255_LUNG	1	1	0.3632	FALSE	369	2501	205	193	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-TA--MT-TC	21	9	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1695	0.0726	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH3255_LUNG	1	1	0.2421	FALSE	462	80	0	856	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-TA--MT-TN	7	65	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0.5246	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH3255_LUNG	1	1	0.5811	FALSE	369	2501	205	193	0	FALSE	ACH-000109
NCIH3255_LUNG	RP11-123O10.4--GRIP1	21	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1695	0.0242	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH3255_LUNG	1	1	0.1937	FALSE	416	2512	207	587	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-CO1	20	5	MT-ND4	2344	chrM:12103:+	MT-CO1	6060	chrM:6585:+	INCL_NON_REF_SPLICE	NO	0	17569	1	0	0.1614	0.0404	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	0	1	0.2018	FALSE	19	91	11	16	0	FALSE	ACH-000109
NCIH3255_LUNG	PHF12--MAPT	18	9	PHF12	1877	chr17:27277913:-	MAPT	43242	chr17:44067414:+	INCL_NON_REF_SPLICE	YES	11	0	0.71	1	0.1453	0.0726	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MAPT->chr17:43971748-44105700:+,microtubule_associated_protein_tau	NCIH3255_LUNG	0.71	1	0.2179	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	PHF12--MAPT	17	11	PHF12	2280	chr17:27277510:-	MAPT	43075	chr17:44067247:+	INCL_NON_REF_SPLICE	YES	15	0	0.65	1	0.1372	0.0888	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MAPT->chr17:43971748-44105700:+,microtubule_associated_protein_tau	NCIH3255_LUNG	0.65	1	0.226	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	MT-CO3--MT-ATP6	5	53	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	NO	22	0	0.72	1	0.0404	0.4278	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH3255_LUNG	0.72	1	0.4682	FALSE	189	492	56	216	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-CO3--MT-ATP6	5	53	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	22	0	0.72	1	0.0404	0.4278	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH3255_LUNG	0.72	1	0.4682	FALSE	189	492	56	216	0	FALSE	ACH-000109
NCIH3255_LUNG	COL8A1--MT-ND4	18	0	COL8A1	17236	chr3:99515898:+	MT-ND4	22694	chrM:11045:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1453	0	COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH3255_LUNG	1	1	0.1453	FALSE	0	0	0	1	0	FALSE	ACH-000109
NCIH3255_LUNG	NRIP1--AF127936.7	17	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.9	1	0.1372	0.0161	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH3255_LUNG	0.9	1	0.1533	FALSE	292	1546	117	613	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-CO1	17	1	MT-ND4	1201	chrM:10960:+	MT-CO1	5811	chrM:6336:+	INCL_NON_REF_SPLICE	YES	10238	15506	0	0	0.1372	0.0081	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	0	0	0.1453	FALSE	19	89	11	16	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-TA--MT-TC	17	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1372	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH3255_LUNG	1	1	0.1372	FALSE	462	80	0	856	0	FALSE	ACH-000109
NCIH3255_LUNG	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1372	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH3255_LUNG	1	1	0.1372	TRUE	0	0	0	518	0	FALSE	ACH-000109
NCIH3255_LUNG	SLC25A53--MCTS1	15	7	SLC25A53	1150	chrX:103401559:-	MCTS1	12919	chrX:119727939:+	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.1211	0.0565	SLC25A53->chrX:103343898-103401708:-,solute_carrier_family_25_member_53,MCTS1->chrX:119727865-119754929:+,malignant_T-cell_amplified_sequence_1	NCIH3255_LUNG	0.92	1	0.1776	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	MT-TA--MT-TN	9	30	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0726	0.2421	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH3255_LUNG	1	1	0.3147	FALSE	369	2501	205	193	0	FALSE	ACH-000109
NCIH3255_LUNG	GOLIM4--PASD1	14	9	GOLIM4	1877	chr3:167812887:-	PASD1	22248	chrX:150769999:+	ONLY_REF_SPLICE	YES	62	3	0.27	0.88	0.113	0.0726	GOLIM4->chr3:167726465-167813763:-,golgi_integral_membrane_protein_4,PASD1->PAS_domain_containing_1,chrX:150732094-150845211:+	NCIH3255_LUNG	0.27	0.88	0.1856	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	PHF12--MAPT	13	10	PHF12	1877	chr17:27277913:-	MAPT	43173	chr17:44067345:+	INCL_NON_REF_SPLICE	YES	11	1	0.68	0.96	0.1049	0.0807	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MAPT->chr17:43971748-44105700:+,microtubule_associated_protein_tau	NCIH3255_LUNG	0.68	0.96	0.1856	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	MT-ND6--MT-TE	9	25	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0726	0.2018	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3255_LUNG	1	1	0.2744	FALSE	499	1288	110	792	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-CO3--MT-ATP6	4	44	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	21	8	0.7	0.86	0.0323	0.3551	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH3255_LUNG	0.7	0.86	0.3874	FALSE	189	492	56	216	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND6--MT-TE	10	19	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0807	0.1534	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3255_LUNG	0.97	1	0.2341	FALSE	499	1288	110	792	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-CO3--MT-ATP6	3	46	MT-CO3	1138	chrM:9344:+	MT-ATP6	4905	chrM:8647:+	INCL_NON_REF_SPLICE	YES	21	1	0.7	0.98	0.0242	0.3713	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH3255_LUNG	0.7	0.98	0.3955	FALSE	189	492	56	216	0	FALSE	ACH-000109
NCIH3255_LUNG	SIPA1L3--RRBP1	13	1	SIPA1L3	4162	chr19:38519796:+	RRBP1	41644	chr20:17641173:-	ONLY_REF_SPLICE	YES	29	515	0.33	0.03	0.1049	0.0081	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,RRBP1->chr20:17594323-17662940:-,ribosome_binding_protein_1	NCIH3255_LUNG	0.03	0.33	0.113	TRUE	0	0	0	1	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-CO1	13	0	MT-ND4	1998	chrM:11757:+	MT-CO1	6602	chrM:7127:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1049	0	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	1	1	0.1049	FALSE	19	92	11	16	0	FALSE	ACH-000109
NCIH3255_LUNG	RP11-96H19.1--RP11-446N19.1	11	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0888	0.0404	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH3255_LUNG	1	1	0.1292	FALSE	515	4851	409	746	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND6--MT-TE	7	18	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0.1453	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3255_LUNG	1	1	0.2018	FALSE	499	1288	110	792	0	FALSE	ACH-000109
NCIH3255_LUNG	HSP90AB1--MT-RNR2	11	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2375	0	0.01	1	0.0888	0.0081	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH3255_LUNG	0.01	1	0.0969	FALSE	13	9	0	364	0	FALSE	ACH-000109
NCIH3255_LUNG	HSP90AB1--MT-RNR2	10	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2368	0	0	1	0.0807	0.0081	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH3255_LUNG	0	1	0.0888	FALSE	13	9	0	364	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-TA--MT-TN	10	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0807	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH3255_LUNG	1	1	0.0807	FALSE	369	2501	205	193	0	FALSE	ACH-000109
NCIH3255_LUNG	CTD-2337A12.1--CAST	9	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	236	1	0.04	0.0726	0.0081	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH3255_LUNG	0.04	1	0.0807	TRUE	347	1186	183	220	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-TA--MT-TN	9	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0726	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH3255_LUNG	1	1	0.0726	FALSE	369	2501	205	193	0	FALSE	ACH-000109
NCIH3255_LUNG	RGP1--ZCCHC7	9	0	RGP1	8656	chr9:35756858:+	ZCCHC7	21795	chr9:37302185:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0726	0	RGP1->RGP1_homolog,_RAB6A_GEF_complex_partner_1,chr9:35749203-35758572:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	NCIH3255_LUNG	1	1	0.0726	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	RGP1--ZCCHC7	8	2	RGP1	8992	chr9:35757194:+	ZCCHC7	21795	chr9:37302185:+	INCL_NON_REF_SPLICE	YES	36	48	0.22	0.17	0.0646	0.0161	RGP1->RGP1_homolog,_RAB6A_GEF_complex_partner_1,chr9:35749203-35758572:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	NCIH3255_LUNG	0.17	0.22	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	RP11-96H19.1--RP11-446N19.1	7	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0565	0.0404	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH3255_LUNG	1	1	0.0969	FALSE	407	2205	196	549	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-TA--MT-TN	8	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH3255_LUNG	1	1	0.0646	FALSE	369	2501	205	193	0	FALSE	ACH-000109
NCIH3255_LUNG	CALM3--MT-ND4L	6	6	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	743	0	0.02	1	0.0484	0.0484	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH3255_LUNG	0.02	1	0.0968	FALSE	1	1	0	107	0	FALSE	ACH-000109
NCIH3255_LUNG	NRIP1--AF127936.7	6	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	19	0	0.39	1	0.0484	0.0484	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH3255_LUNG	0.39	1	0.0968	FALSE	164	806	69	479	0	FALSE	ACH-000109
NCIH3255_LUNG	RP11-112J3.16--ZCCHC7	7	1	RP11-112J3.16	1214	chr9:35772373:+	ZCCHC7	16377	chr9:37302185:+	ONLY_REF_SPLICE	YES	1	48	0.89	0.14	0.0565	0.0081	RP11-112J3.16->chr9:35772160-35790429:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	NCIH3255_LUNG	0.14	0.89	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	SIPA1L3--RRBP1	7	1	SIPA1L3	4162	chr19:38519796:+	RRBP1	40567	chr20:17660720:-	ONLY_REF_SPLICE	YES	29	532	0.22	0.01	0.0565	0.0081	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,RRBP1->chr20:17594323-17662940:-,ribosome_binding_protein_1	NCIH3255_LUNG	0.01	0.22	0.0646	FALSE	0	0	0	1	0	FALSE	ACH-000109
NCIH3255_LUNG	TMEM164--SH3BGRL	2	21	TMEM164	7153	chrX:109388104:+	SH3BGRL	21156	chrX:80532483:+	ONLY_REF_SPLICE	YES	154	4	0.13	0.85	0.0161	0.1695	TMEM164->chrX:109245859-109425962:+,transmembrane_protein_164,SH3BGRL->SH3_domain_binding_glutamate_rich_protein_like,chrX:80457442-80554046:+	NCIH3255_LUNG	0.13	0.85	0.1856	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH3255_LUNG	1	1	0.0565	TRUE	1	39	0	134	39	FALSE	ACH-000109
NCIH3255_LUNG	MT-CO3--MT-ATP6	7	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH3255_LUNG	1	1	0.0565	FALSE	189	492	56	216	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-TA--MT-TN	7	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH3255_LUNG	1	1	0.0565	FALSE	369	2501	205	193	0	FALSE	ACH-000109
NCIH3255_LUNG	NRIP1--AF127936.7	6	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.37	1	0.0484	0.0323	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH3255_LUNG	0.37	1	0.0807	FALSE	125	705	46	456	0	FALSE	ACH-000109
NCIH3255_LUNG	SLC1A5--MT-ND4L	7	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH3255_LUNG	1	1	0.0565	FALSE	0	0	0	189	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND6--MT-TE	3	15	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0.1211	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3255_LUNG	1	1	0.1453	FALSE	499	1288	110	792	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND6--MT-TE	4	11	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0323	0.0888	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3255_LUNG	0.94	1	0.1211	FALSE	499	1288	110	792	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-CO1	5	5	MT-ND4	1910	chrM:11669:+	MT-CO1	5892	chrM:6417:+	INCL_NON_REF_SPLICE	YES	12331	15141	0	0	0.0404	0.0404	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	0	0	0.0808	FALSE	19	92	11	16	0	FALSE	ACH-000109
NCIH3255_LUNG	RP11-1E3.1--RP11-455B3.1	6	1	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0.0081	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	NCIH3255_LUNG	1	1	0.0565	TRUE	13	49	2	38	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ATP6--MT-CO1	6	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	1	1	0.0484	FALSE	183	104	9	328	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-CO3--MT-ATP6	6	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH3255_LUNG	1	1	0.0484	FALSE	189	492	56	216	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-ND1	6	0	MT-ND4	1285	chrM:11044:+	MT-ND1	5862	chrM:3790:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH3255_LUNG	1	1	0.0484	FALSE	51	51	3	16	0	FALSE	ACH-000109
NCIH3255_LUNG	RP11-59N23.3--RP11-729I10.2	6	0	RP11-59N23.3	1459	chr12:21815705:+	RP11-729I10.2	7910	chr12:22022516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0484	0	NEIGHBORS[67178],RP11-59N23.3->chr12:21815247-21912966:+,RP11-729I10.2->chr12:21980144-22040891:+	NCIH3255_LUNG	1	1	0.0484	FALSE	0	2	0	5	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-CO3--MT-ATP6	5	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	21	0	0.28	1	0.0404	0.0242	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH3255_LUNG	0.28	1	0.0646	FALSE	189	492	56	216	0	FALSE	ACH-000109
NCIH3255_LUNG	WNT7B--CABIN1	5	3	WNT7B	6645	chr22:46326978:-	CABIN1	51771	chr22:24560368:+	ONLY_REF_SPLICE	YES	272	82	0.03	0.09	0.0404	0.0242	WNT7B->Wnt_family_member_7B,chr22:46316242-46373009:-,CABIN1->calcineurin_binding_protein_1,chr22:24407642-24574596:+	NCIH3255_LUNG	0.03	0.09	0.0646	TRUE	0	0	0	1	0	FALSE	ACH-000109
NCIH3255_LUNG	ARF3--SBF2	5	2	ARF3	7562	chr12:49332818:-	SBF2	49320	chr11:9861243:-	INCL_NON_REF_SPLICE	YES	430	18	0.02	0.28	0.0404	0.0161	ARF3->ADP_ribosylation_factor_3,chr12:49329506-49351334:-,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	NCIH3255_LUNG	0.02	0.28	0.0565	TRUE	0	0	0	1	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-CO1	4	6	MT-ND4	2122	chrM:11881:+	MT-CO1	5909	chrM:6434:+	INCL_NON_REF_SPLICE	NO	9229	15789	0	0	0.0323	0.0484	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	0	0	0.0807	FALSE	19	92	11	16	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-TA--MT-TC	3	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0.0807	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH3255_LUNG	1	1	0.1049	FALSE	462	80	0	856	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-CO3--MT-ATP6	4	5	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	23	0	0.28	1	0.0323	0.0404	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH3255_LUNG	0.28	1	0.0727	FALSE	189	492	56	216	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-CO1	5	1	MT-ND4	1217	chrM:10976:+	MT-CO1	5692	chrM:6217:+	INCL_NON_REF_SPLICE	YES	10158	15131	0	0	0.0404	0.0081	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	0	0	0.0485	FALSE	19	89	11	16	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-CO1	4	5	MT-ND4	2338	chrM:12097:+	MT-CO1	6072	chrM:6597:+	INCL_NON_REF_SPLICE	YES	0	17199	1	0	0.0323	0.0404	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	0	1	0.0727	FALSE	19	91	11	16	0	FALSE	ACH-000109
NCIH3255_LUNG	SLC25A53--MCTS1	5	1	SLC25A53	1150	chrX:103401559:-	MCTS1	18101	chrX:119742080:+	ONLY_REF_SPLICE	YES	2	281	0.75	0.02	0.0404	0.0081	SLC25A53->chrX:103343898-103401708:-,solute_carrier_family_25_member_53,MCTS1->chrX:119727865-119754929:+,malignant_T-cell_amplified_sequence_1	NCIH3255_LUNG	0.02	0.75	0.0485	TRUE	0	0	0	1	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ATP6--MT-CO1	5	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	1	1	0.0404	FALSE	183	104	9	328	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-CO1	5	0	MT-ND4	1521	chrM:11280:+	MT-CO1	6598	chrM:7123:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	1	1	0.0404	FALSE	19	92	11	16	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3255_LUNG	1	1	0.0404	FALSE	499	1288	110	792	0	FALSE	ACH-000109
NCIH3255_LUNG	RP11-155G15.2--RP11-1E3.1	5	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH3255_LUNG	1	1	0.0404	FALSE	46	201	11	112	0	FALSE	ACH-000109
NCIH3255_LUNG	RPSAP52--HMGA2	5	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	NCIH3255_LUNG	1	1	0.0404	FALSE	0	59	0	125	0	FALSE	ACH-000109
NCIH3255_LUNG	ZSWIM8--MT-ND4L	5	0	ZSWIM8	12235	chr10:75557564:+	MT-ND4L	19223	chrM:10470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	ZSWIM8->chr10:75545340-75561551:+,zinc_finger_SWIM-type_containing_8,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH3255_LUNG	1	1	0.0404	FALSE	0	0	0	3	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-CO1	4	3	MT-ND4	1773	chrM:11532:+	MT-CO1	5916	chrM:6441:+	INCL_NON_REF_SPLICE	YES	12203	15873	0	0	0.0323	0.0242	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	0	0	0.0565	FALSE	19	92	11	16	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ATP6--MT-CO1	4	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	7714	15735	0	0	0.0323	0.0081	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	0	0	0.0404	FALSE	183	104	9	328	0	FALSE	ACH-000109
NCIH3255_LUNG	AC068580.6--MT-ND1	4	0	AC068580.6	2075	chr11:1782652:+	MT-ND1	6155	chrM:3322:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	AC068580.6->chr11:1781578-1783716:+,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH3255_LUNG	1	1	0.0323	FALSE	0	0	0	3	0	FALSE	ACH-000109
NCIH3255_LUNG	COL8A1--MT-ND4	4	0	COL8A1	15946	chr3:99514608:+	MT-ND4	22586	chrM:10937:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH3255_LUNG	1	1	0.0323	FALSE	0	0	0	1	0	FALSE	ACH-000109
NCIH3255_LUNG	DNAH3--RAI2	4	0	DNAH3	11589	chr16:21136496:-	RAI2	78923	chrX:17855853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	DNAH3->chr16:20944433-21170762:-,dynein_axonemal_heavy_chain_3,RAI2->chrX:17818169-17879457:-,retinoic_acid_induced_2	NCIH3255_LUNG	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	1	1	0.0323	FALSE	183	104	9	328	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3255_LUNG	1	1	0.0323	FALSE	499	1288	110	792	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3255_LUNG	1	1	0.0323	FALSE	499	1288	110	792	0	FALSE	ACH-000109
NCIH3255_LUNG	RP11-120D5.1--MID1	3	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	33	1	0.17	0.0242	0.0323	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH3255_LUNG	0.17	1	0.0565	FALSE	16	356	14	466	0	FALSE	ACH-000109
NCIH3255_LUNG	SIPA1L3--ZNF420	4	0	SIPA1L3	1131	chr19:38397998:+	ZNF420	47135	chr19:37618030:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,ZNF420->chr19:37498759-37621216:+,zinc_finger_protein_420	NCIH3255_LUNG	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	FN1--MT-CO1	3	2	FN1	40366	chr2:216240068:-	MT-CO1	55473	chrM:6441:+	INCL_NON_REF_SPLICE	YES	2005	15872	0	0	0.0242	0.0161	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	0	0	0.0403	FALSE	0	0	0	1	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-CO1	3	2	MT-ND4	1500	chrM:11259:+	MT-CO1	5872	chrM:6397:+	INCL_NON_REF_SPLICE	YES	13483	15528	0	0	0.0242	0.0161	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	0	0	0.0403	FALSE	19	92	11	16	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-CO1	3	2	MT-ND4	1843	chrM:11602:+	MT-CO1	6015	chrM:6540:+	INCL_NON_REF_SPLICE	YES	12122	16864	0	0	0.0242	0.0161	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	0	0	0.0403	FALSE	19	92	11	16	0	FALSE	ACH-000109
NCIH3255_LUNG	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	72	1	0.05	0.0242	0.0081	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH3255_LUNG	0.05	1	0.0323	TRUE	465	1949	224	605	0	FALSE	ACH-000109
NCIH3255_LUNG	EFCAB11--RP11-944C7.1	3	0	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	NCIH3255_LUNG	1	1	0.0242	TRUE	31	91	1	18	0	FALSE	ACH-000109
NCIH3255_LUNG	FAP--IFIH1	3	0	FAP	3036	chr2:163099418:-	IFIH1	39878	chr2:163150178:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[21928],FAP->chr2:163027194-163101661:-,fibroblast_activation_protein_alpha,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	NCIH3255_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH3255_LUNG	1	1	0.0242	FALSE	189	492	56	216	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-CO1	3	0	MT-ND4	1245	chrM:11004:+	MT-CO1	6028	chrM:6553:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	1	1	0.0242	FALSE	19	89	11	16	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-CO1	3	0	MT-ND4	2234	chrM:11993:+	MT-CO1	6657	chrM:7182:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH3255_LUNG	1	1	0.0242	FALSE	19	91	11	16	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-ND1	3	0	MT-ND4	1243	chrM:11002:+	MT-ND1	5567	chrM:3495:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH3255_LUNG	1	1	0.0242	FALSE	51	51	3	16	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND4--MT-ND1	3	0	MT-ND4	1544	chrM:11303:+	MT-ND1	5413	chrM:3341:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH3255_LUNG	1	1	0.0242	FALSE	51	52	3	16	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3255_LUNG	1	1	0.0242	FALSE	499	1288	110	792	0	FALSE	ACH-000109
NCIH3255_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4584	chrM:14684:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3255_LUNG	1	1	0.0242	FALSE	499	1288	110	792	0	FALSE	ACH-000109
NCIH3255_LUNG	PLXNB2--DENND6B	1	8	PLXNB2	1075	chr22:50745982:-	DENND6B	25195	chr22:50756449:-	ONLY_REF_SPLICE	YES	30	33	0.23	0.21	0.0081	0.0646	LOCAL_REARRANGEMENT:-:[1403],PLXNB2->chr22:50713408-50746056:-,plexin_B2,DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-	NCIH3255_LUNG	0.21	0.23	0.0727	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	RP11-59N23.3--RP11-729I10.2	3	0	RP11-59N23.3	2631	chr12:21913019:+	RP11-729I10.2	7910	chr12:22022516:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0	NEIGHBORS[67178],RP11-59N23.3->chr12:21815247-21912966:+,RP11-729I10.2->chr12:21980144-22040891:+	NCIH3255_LUNG	1	1	0.0242	FALSE	0	0	0	3	0	FALSE	ACH-000109
NCIH3255_LUNG	LINC01014--KCNMB2	2	1	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0161	0.0081	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH3255_LUNG	0.75	1	0.0242	FALSE	12	33	18	33	0	FALSE	ACH-000109
NCIH3255_LUNG	LINC01014--KCNMB2	2	1	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0161	0.0081	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH3255_LUNG	0.75	1	0.0242	FALSE	11	60	26	37	0	FALSE	ACH-000109
NCIH3255_LUNG	MGST1--LMO3	2	1	MGST1	16905	chr12:16536538:+	LMO3	38371	chr12:16713472:-	ONLY_REF_SPLICE	YES	4	425	0.43	0.01	0.0161	0.0081	NEIGHBORS_OVERLAP:+:-:[60886],MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,LMO3->LIM_domain_only_3,Oncogene{Bushman},chr12:16701307-16763528:-	NCIH3255_LUNG	0.01	0.43	0.0242	FALSE	0	5	0	3	0	FALSE	ACH-000109
NCIH3255_LUNG	SLC25A53--MCTS1	2	1	SLC25A53	1150	chrX:103401559:-	MCTS1	17003	chrX:119739934:+	ONLY_REF_SPLICE	YES	2	281	0.6	0.01	0.0161	0.0081	SLC25A53->chrX:103343898-103401708:-,solute_carrier_family_25_member_53,MCTS1->chrX:119727865-119754929:+,malignant_T-cell_amplified_sequence_1	NCIH3255_LUNG	0.01	0.6	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000109
NCIH3255_LUNG	AC027119.1--AC026167.1	2	0	AC027119.1	1674	chr3:6005202:+	AC026167.1	6915	chr3:6400588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0161	0	NEIGHBORS[24364],AC027119.1->chr3:6004529-6165807:+,AC026167.1->chr3:6190171-6407572:+	NCIH3255_LUNG	1	1	0.0161	FALSE	1	37	1	9	0	FALSE	ACH-000109
NCIH3255_LUNG	FRYL--GNAS	2	0	FRYL	1245	chr4:48782095:-	GNAS	98781	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0161	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH3255_LUNG	1	1	0.0161	TRUE	0	1	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	PNISR--TTYH3	2	0	PNISR	5163	chr6:99860427:-	TTYH3	28181	chr7:2691821:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0161	0	PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-,TTYH3->chr7:2671585-2704436:+,tweety_family_member_3	NCIH3255_LUNG	1	1	0.0161	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	RP11-112J3.16--ZCCHC7	2	0	RP11-112J3.16	1214	chr9:35772373:+	ZCCHC7	17421	chr9:37304185:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0161	0	RP11-112J3.16->chr9:35772160-35790429:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	NCIH3255_LUNG	1	1	0.0161	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	RP11-1L12.3--SLC5A12	2	0	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0161	0	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	NCIH3255_LUNG	1	1	0.0161	TRUE	3	101	0	60	0	FALSE	ACH-000109
NCIH3255_LUNG	ASNA1--C19orf43	1	2	ASNA1	2520	chr19:12849472:+	C19orf43	10926	chr19:12842235:-	ONLY_REF_SPLICE	YES	212	265	0.01	0.01	0.0081	0.0161	LOCAL_INVERSION:+:-:[2364],ASNA1->arsA_arsenite_transporter,_ATP-binding,_homolog_1_(bacterial),chr19:12847953-12859137:+,C19orf43->chr19:12841454-12845589:-,chromosome_19_open_reading_frame_43	NCIH3255_LUNG	0.01	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000109
NCIH3255_LUNG	GOLIM4--PASD1	1	2	GOLIM4	1877	chr3:167812887:-	PASD1	25482	chrX:150789402:+	ONLY_REF_SPLICE	YES	62	6	0.05	0.33	0.0081	0.0161	GOLIM4->chr3:167726465-167813763:-,golgi_integral_membrane_protein_4,PASD1->PAS_domain_containing_1,chrX:150732094-150845211:+	NCIH3255_LUNG	0.05	0.33	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000109
NCIH3255_LUNG	RP11-59N23.1--CMAS	1	2	RP11-59N23.1	1106	chr12:21913019:+	CMAS	8339	chr12:22211501:+	ONLY_REF_SPLICE	YES	9	147	0.25	0.02	0.0081	0.0161	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH3255_LUNG	0.02	0.25	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000109
NCIH3255_LUNG	AC002066.1--AC073130.1	1	1	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0081	0.0081	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	NCIH3255_LUNG	0.67	1	0.0162	FALSE	0	3	0	33	0	FALSE	ACH-000109
NCIH3255_LUNG	AC002066.1--TES	1	1	AC002066.1	1112	chr7:116139408:-	TES	13999	chr7:115874588:+	ONLY_REF_SPLICE	YES	1	336	0.67	0.01	0.0081	0.0081	NEIGHBORS_OVERLAP:-:+:[20523],AC002066.1->chr7:115878314-116139519:-,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	NCIH3255_LUNG	0.01	0.67	0.0162	FALSE	0	2	0	3	0	FALSE	ACH-000109
NCIH3255_LUNG	CLDN12--SEC31A	1	1	CLDN12	4834	chr7:90034922:+	SEC31A	54691	chr4:83763634:-	ONLY_REF_SPLICE	YES	351	194	0.01	0.01	0.0081	0.0081	CLDN12->chr7:90013035-90142716:+,claudin_12,SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-	NCIH3255_LUNG	0.01	0.01	0.0162	FALSE	0	0	0	1	0	FALSE	ACH-000109
NCIH3255_LUNG	CSTB--MKI67	1	1	CSTB	1242	chr21:45196085:-	MKI67	10590	chr10:129917583:-	ONLY_REF_SPLICE	NO	348	104	0.01	0.02	0.0081	0.0081	CSTB->Oncogene{Bushman},chr21:45192393-45196326:-,cystatin_B,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	NCIH3255_LUNG	0.01	0.02	0.0162	FALSE	0	0	0	1	0	FALSE	ACH-000109
NCIH3255_LUNG	DDX5--SUGP2	1	1	DDX5	7190	chr17:62498128:-	SUGP2	25168	chr19:19112483:-	ONLY_REF_SPLICE	YES	989	73	0	0.03	0.0081	0.0081	DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-,SUGP2->SURP_and_G-patch_domain_containing_2,chr19:19101697-19144832:-	NCIH3255_LUNG	0	0.03	0.0162	FALSE	0	0	0	1	0	FALSE	ACH-000109
NCIH3255_LUNG	GOLIM4--PASD1	1	1	GOLIM4	1877	chr3:167812887:-	PASD1	30444	chrX:150828185:+	ONLY_REF_SPLICE	NO	62	10	0.03	0.17	0.0081	0.0081	GOLIM4->chr3:167726465-167813763:-,golgi_integral_membrane_protein_4,PASD1->PAS_domain_containing_1,chrX:150732094-150845211:+	NCIH3255_LUNG	0.03	0.17	0.0162	TRUE	0	0	0	1	0	FALSE	ACH-000109
NCIH3255_LUNG	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	17	2	0.11	0.5	0.0081	0.0081	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH3255_LUNG	0.11	0.5	0.0162	FALSE	7	44	2	41	0	FALSE	ACH-000109
NCIH3255_LUNG	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	19	2	0.1	0.5	0.0081	0.0081	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH3255_LUNG	0.1	0.5	0.0162	FALSE	8	57	1	47	0	FALSE	ACH-000109
NCIH3255_LUNG	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	0	33	1	0.06	0.0081	0.0081	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH3255_LUNG	0.06	1	0.0162	FALSE	0	48	1	163	0	FALSE	ACH-000109
NCIH3255_LUNG	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	0	1	1	0.67	0.0081	0.0081	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH3255_LUNG	0.67	1	0.0162	FALSE	93	270	15	244	0	FALSE	ACH-000109
NCIH3255_LUNG	TMEM164--SH3BGRL	1	1	TMEM164	2534	chrX:109247392:+	SH3BGRL	21156	chrX:80532483:+	ONLY_REF_SPLICE	YES	116	4	0.02	0.33	0.0081	0.0081	TMEM164->chrX:109245859-109425962:+,transmembrane_protein_164,SH3BGRL->SH3_domain_binding_glutamate_rich_protein_like,chrX:80457442-80554046:+	NCIH3255_LUNG	0.02	0.33	0.0162	TRUE	0	0	0	1	0	FALSE	ACH-000109
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF3--PBX1	1022	368	TCF3	13408	chr19:1619110:-	PBX1	46216	chr1:164761731:+	ONLY_REF_SPLICE	YES	405	0	0.77	1	17.0625	6.1439	Cosmic{samples=197,mutations=26,papers=2},Mitelman{ALL=2,BL=2},chimerdb_pubmed{childhood preBcell acute lymphoblastic leukemia(ALL),Bcell precursor acute lymphoblastic leukemia,preBcell acute lymphoblastic leukemia,acute lymphoblastoid leukemia (ALL),acute lymphoblastic leukemia,Acute leukemia,acute lymphoblastic leukemia (ALL),lymphoma,acute lymphoblastic leukaemias (ALL),CML, ALL,childhood preB acute lymphoblastic leukemia (ALL),severalleukaemia,pediatric preBcell leukemia,acute lymphoblastic eukemia/lymphoma,Acute lymphoblastic leukaemia(ALL),leukemia,preB acute lymphoblastic leukemia (ALL),pediatric preB cell leukemia,acute leukemia,acute lymphoblastic leukemias,preB acute lymphoblastoid leukemias (ALL),acute lymphoblastic leukaemia (ALL),preB acute lymphoblastic leukemia, acute lymphoblastic leukemia (ALL),Several human leukemias,preBcell acute lymphocytic leukemia, acute myeloid leukemia},TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	23.2064	TRUE	0	0	0	4	0	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	100	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6695	0.4508	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.1203	TRUE	508	994	45	981	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	76	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2688	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2688	TRUE	0	0	0	518	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-574K11.29	59	2	TIMM23	6952	chr10:51606988:-	RP11-574K11.29	13578	chr10:75473090:-	INCL_NON_REF_SPLICE	YES	131	3	0.32	0.95	0.985	0.0334	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-574K11.29->chr10:75463493-75473339:-	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.95	1.0184	TRUE	1	1	0	6	1	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	24	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4007	0.1002	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5009	FALSE	416	2512	207	587	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-565E6.1--HYDIN	16	5	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2671	0.0835	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3506	TRUE	456	1387	91	133	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.82	1	0.167	0.0668	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.2338	FALSE	499	1288	110	792	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.167	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.167	TRUE	0	0	0	434	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	8	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	51	0	0.16	1	0.1336	0.0334	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.167	FALSE	125	705	46	456	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1336	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1336	FALSE	499	1288	110	792	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1169	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1169	FALSE	499	1288	110	792	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	6	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.1002	0.0167	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.1169	FALSE	292	1546	117	613	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	6	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1002	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1002	FALSE	515	4851	409	746	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	32	4	0.26	0.73	0.0501	0.1336	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.73	0.1837	TRUE	267	562	48	632	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0501	0.0835	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1336	FALSE	499	1288	110	792	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0668	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0668	TRUE	0	0	0	434	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0668	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0668	TRUE	0	0	0	434	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	4	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0668	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0668	FALSE	46	201	11	112	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-644C3.1--RP11-71G7.1	4	0	RP11-644C3.1	2198	chr3:176571497:-	RP11-71G7.1	12960	chr3:176322474:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0668	0	NEIGHBORS[8409],RP11-644C3.1->chr3:176361729-176585626:-,RP11-71G7.1->chr3:176321931-176353320:-	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0668	FALSE	0	7	0	2	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	2	CCDC26	2447	chr8:130587128:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	20	0	0.2	1	0.0501	0.0334	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.0835	TRUE	0	3	0	7	3	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF3--PBX1	3	1	TCF3	10234	chr19:1622396:-	PBX1	46419	chr1:164761934:+	INCL_NON_REF_SPLICE	YES	422	225	0.01	0.02	0.0501	0.0167	Cosmic{samples=197,mutations=26,papers=2},Mitelman{ALL=2,BL=2},chimerdb_pubmed{childhood preBcell acute lymphoblastic leukemia(ALL),Bcell precursor acute lymphoblastic leukemia,preBcell acute lymphoblastic leukemia,acute lymphoblastoid leukemia (ALL),acute lymphoblastic leukemia,Acute leukemia,acute lymphoblastic leukemia (ALL),lymphoma,acute lymphoblastic leukaemias (ALL),CML, ALL,childhood preB acute lymphoblastic leukemia (ALL),severalleukaemia,pediatric preBcell leukemia,acute lymphoblastic eukemia/lymphoma,Acute lymphoblastic leukaemia(ALL),leukemia,preB acute lymphoblastic leukemia (ALL),pediatric preB cell leukemia,acute leukemia,acute lymphoblastic leukemias,preB acute lymphoblastoid leukemias (ALL),acute lymphoblastic leukaemia (ALL),preB acute lymphoblastic leukemia, acute lymphoblastic leukemia (ALL),Several human leukemias,preBcell acute lymphocytic leukemia, acute myeloid leukemia},TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0668	FALSE	0	0	0	4	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CRIM1--PTMA	3	0	CRIM1	11567	chr2:36706662:+	PTMA	31973	chr2:232573237:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0501	FALSE	499	1288	110	792	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	0	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0501	FALSE	0	9	0	55	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	3	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0501	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0501	TRUE	62	24	1	171	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0.0501	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0835	FALSE	192	492	57	212	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	2	2	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	20	0	0.17	1	0.0334	0.0334	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.0668	TRUE	0	2	0	11	2	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	84	0	0.05	1	0.0334	0.0334	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0668	FALSE	164	806	69	479	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MSL2--STAG1	2	0	MSL2	3270	chr3:135913814:-	STAG1	20633	chr3:136240259:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	YOSHIHARA_TCGA_num_samples[BRCA:1|OV:1],MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila),STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	1	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0.0668	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0835	FALSE	93	270	15	244	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0334	TRUE	477	1352	189	275	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC16A10--ZHX2	2	0	SLC16A10	1518	chr6:111409298:+	ZHX2	24092	chr8:123875716:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	SLC16A10->chr6:111408781-111552397:+,solute_carrier_family_16_member_10,ZHX2->chr8:123793633-123986750:+,zinc_fingers_and_homeoboxes_2	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	2	CCDC26	3495	chr8:130492889:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	19	0	0.14	1	0.0167	0.0334	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	2	CCDC26	3495	chr8:130492889:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	NO	19	0	0.14	1	0.0167	0.0334	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.0501	TRUE	0	1	0	1	1	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-565E6.1--HYDIN	1	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	4	1	0.43	0.0167	0.0334	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.0501	TRUE	84	87	4	41	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC019118.2--AC019118.3	1	1	AC019118.2	1732	chr2:3129067:-	AC019118.3	12025	chr2:3135938:-	ONLY_REF_SPLICE	NO	0	55	1	0.04	0.0167	0.0167	LOCAL_REARRANGEMENT:-:[5555],AC019118.2->chr2:2898820-3129798:-,AC019118.3->chr2:3135353-3149551:-	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--TCL6	1	1	CPSF6	11046	chr12:69656342:+	TCL6	21493	chr14:96118434:+	ONLY_REF_SPLICE	YES	155	238	0.01	0.01	0.0167	0.0167	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,TCL6->Oncogene{Bushman},T-cell_leukemia/lymphoma_6_(non-protein_coding),chr14:96116835-96146170:+	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0334	FALSE	0	0	0	1	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0167	0.0167	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0334	FALSE	467	2173	244	435	0	FALSE	ACH-000728
KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF3--PBX1	1	1	TCF3	4502	chr19:1646354:-	PBX1	46216	chr1:164761731:+	ONLY_REF_SPLICE	YES	493	0	0	1	0.0167	0.0167	Cosmic{samples=197,mutations=26,papers=2},Mitelman{ALL=2,BL=2},chimerdb_pubmed{childhood preBcell acute lymphoblastic leukemia(ALL),Bcell precursor acute lymphoblastic leukemia,preBcell acute lymphoblastic leukemia,acute lymphoblastoid leukemia (ALL),acute lymphoblastic leukemia,Acute leukemia,acute lymphoblastic leukemia (ALL),lymphoma,acute lymphoblastic leukaemias (ALL),CML, ALL,childhood preB acute lymphoblastic leukemia (ALL),severalleukaemia,pediatric preBcell leukemia,acute lymphoblastic eukemia/lymphoma,Acute lymphoblastic leukaemia(ALL),leukemia,preB acute lymphoblastic leukemia (ALL),pediatric preB cell leukemia,acute leukemia,acute lymphoblastic leukemias,preB acute lymphoblastoid leukemias (ALL),acute lymphoblastic leukaemia (ALL),preB acute lymphoblastic leukemia, acute lymphoblastic leukemia (ALL),Several human leukemias,preBcell acute lymphocytic leukemia, acute myeloid leukemia},TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	KASUMI2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0334	FALSE	0	0	0	1	0	FALSE	ACH-000728
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--AC096579.7	3262	2494	IGKV1-39	1519	chr2:89619386:-	AC096579.7	6204	chr2:89161437:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	36.5031	27.9089	GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	64.412	TRUE	11	156	9	1	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--AC096579.7	118	2494	IGKV1-39	1517	chr2:89619388:-	AC096579.7	6202	chr2:89161439:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3205	27.9089	GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	29.2294	TRUE	11	156	9	1	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--AC096579.7	89	2494	IGKV1-39	1518	chr2:89619387:-	AC096579.7	6203	chr2:89161438:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9959	27.9089	GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	28.9048	TRUE	11	156	9	1	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--AC096579.7	15	2494	IGKV1-39	1521	chr2:89619384:-	AC096579.7	6206	chr2:89161435:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1679	27.9089	GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	28.0768	TRUE	11	156	9	1	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--AC096579.7	4	2493	IGKV1-39	1516	chr2:89619389:-	AC096579.7	6201	chr2:89161440:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	27.8977	GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	27.9425	TRUE	11	156	9	1	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--AC096579.7	4	2493	IGKV1-39	1515	chr2:89619390:-	AC096579.7	6200	chr2:89161441:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	27.8977	GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	27.9425	TRUE	11	156	9	1	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--AC096579.7	3	2313	IGKV1-39	1517	chr2:89619388:-	AC096579.7	6215	chr2:89161426:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	25.8834	GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	25.917	TRUE	11	156	9	1	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--AC096579.7	3	2195	IGKV1-39	1530	chr2:89619375:-	AC096579.7	6223	chr2:89161418:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	24.5629	GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	24.5965	TRUE	11	156	9	1	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--AC096579.7	43	1937	IGKV1-39	1508	chr2:89619397:-	AC096579.7	6195	chr2:89161446:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4812	21.6758	GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	22.157	TRUE	11	156	9	1	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--AC096579.7	31	1937	IGKV1-39	1508	chr2:89619397:-	AC096579.7	6193	chr2:89161448:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3469	21.6758	GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	22.0227	TRUE	11	156	9	1	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--AC096579.7	33	544	IGKV1-39	1326	chr2:89619579:-	AC096579.7	7241	chr2:89157199:-	INCL_NON_REF_SPLICE	YES	921	9	0.39	0.98	0.3693	6.0876	GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.98	6.4569	TRUE	2	49	3	3	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--AC096579.7	4	550	IGKV1-39	1329	chr2:89619576:-	AC096579.7	7248	chr2:89157192:-	INCL_NON_REF_SPLICE	YES	913	12	0.38	0.98	0.0448	6.1547	GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.98	6.1995	TRUE	2	49	3	3	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--AC096579.7	3	541	IGKV1-39	1325	chr2:89619580:-	AC096579.7	7240	chr2:89157200:-	INCL_NON_REF_SPLICE	YES	933	9	0.37	0.98	0.0336	6.054	GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.98	6.0876	TRUE	2	49	3	3	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--AC096579.7	8	498	IGKV1-39	1313	chr2:89619592:-	AC096579.7	7244	chr2:89157196:-	INCL_NON_REF_SPLICE	YES	995	9	0.34	0.98	0.0895	5.5728	GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.98	5.6623	TRUE	2	49	3	3	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--PARGP1	92	17	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.0295	0.1902	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2197	TRUE	393	2105	140	19	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	74	6	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1581	1	0.05	0.8281	0.0671	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.8952	FALSE	101	855	57	72	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	55	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	264	12	0.17	0.82	0.6155	0.0112	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.82	0.6267	TRUE	519	3926	326	965	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	46	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5148	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5148	TRUE	0	0	0	518	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	35	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3917	0.056	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4477	FALSE	462	80	0	856	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	27	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3021	0.0224	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3245	FALSE	499	1288	110	792	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	18	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	111	17	0.23	0.67	0.2014	0.179	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.67	0.3804	TRUE	267	562	48	632	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	14	5	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	3	1537	0.86	0.01	0.1567	0.056	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.86	0.2127	FALSE	101	855	57	72	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	12	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	111	17	0.18	0.59	0.1343	0.1343	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.59	0.2686	TRUE	267	562	48	632	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.1231	0.1007	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.2238	FALSE	499	1288	110	792	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1231	0.0336	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1567	FALSE	499	1288	110	792	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1007	0.0336	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1343	FALSE	462	80	0	856	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	8	6	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	1543	1	0.01	0.0895	0.0671	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1566	FALSE	101	855	57	72	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	9	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1007	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1007	FALSE	101	855	57	72	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	7	7	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	2967	1	0	0.0783	0.0783	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1566	FALSE	101	855	57	72	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	0.1902	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.235	FALSE	499	1288	110	792	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0895	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0895	FALSE	462	80	0	856	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	15	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0448	0.1679	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.2127	FALSE	499	1288	110	792	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--AC096579.7	4	12	IGKV1-39	1102	chr2:89619803:-	AC096579.7	7244	chr2:89157196:-	ONLY_REF_SPLICE	YES	15	9	0.52	0.64	0.0448	0.1343	GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.64	0.1791	TRUE	2	49	3	3	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	6	3	MT-ND6	1412	chrM:14262:-	MT-ND5	6311	chrM:14122:+	INCL_NON_REF_SPLICE	YES	703	897	0.01	0.01	0.0671	0.0336	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.1007	FALSE	101	855	57	72	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	2	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	8441	15505	0	0	0.0671	0.0224	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0895	FALSE	183	104	9	328	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0.056	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.112	FALSE	462	80	0	856	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	6	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0671	TRUE	0	5	1	24	1	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	4	7	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	NO	0	2849	1	0	0.0448	0.0783	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1231	FALSE	101	855	57	72	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	5	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	1	0.88	0.88	0.056	0.0224	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.88	0.0784	TRUE	0	1	0	84	1	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	9957	0	0	1	0.056	0.0224	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0784	FALSE	182	97	9	327	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	8175	17299	0	0	0.056	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0672	FALSE	183	104	9	328	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	5	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	41	1069	0.13	0.01	0.056	0.0112	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.13	0.0672	FALSE	0	0	0	434	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	4	4	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	476	1	0.02	0.0448	0.0448	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0896	FALSE	101	855	57	72	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	7657	16027	0	0	0.0448	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.056	FALSE	183	104	9	328	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	4835	chrM:6057:+	INCL_NON_REF_SPLICE	YES	8002	8406	0	0	0.0448	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.056	FALSE	183	97	9	327	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	8212	15532	0	0	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0448	FALSE	183	104	9	328	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	41	1145	0.09	0	0.0336	0.0112	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0448	FALSE	0	0	0	434	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0336	0.0112	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0448	FALSE	515	4851	409	746	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LMOD3--ZRSR2	3	0	LMOD3	3866	chr3:69168286:-	ZRSR2	15148	chrX:15822265:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LMOD3->chr3:69156023-69172183:-,leiomodin_3,ZRSR2->chrX:15808595-15841383:+,zinc_finger_CCCH-type,_RNA_binding_motif_and_serine/arginine_rich_2	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1098	chrM:8624:+	MT-CO1	6183	chrM:7405:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0336	FALSE	183	103	9	328	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0336	FALSE	183	104	9	328	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCT2--NMT1	2	0	CCT2	2011	chr12:69980124:+	NMT1	18519	chr17:43159012:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+,NMT1->N-myristoyltransferase_1,Oncogene{Bushman},chr17:43128978-43186384:+	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUX1--CDC16	2	0	CUX1	15927	chr7:101758553:+	CDC16	61058	chr13:115004825:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	2	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0224	FALSE	1	11	0	34	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRPM7--SNRPN	2	0	TRPM7	1285	chr15:50978728:-	SNRPN	54514	chr15:25207261:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	TRPM7->chr15:50844670-50979012:-,transient_receptor_potential_cation_channel_subfamily_M_member_7,SNRPN->chr15:25068794-25223870:+,small_nuclear_ribonucleoprotein_polypeptide_N	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0112	0.0336	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0448	FALSE	467	2173	244	435	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD74--HERC1	1	1	CD74	3371	chr5:149785822:-	HERC1	35129	chr15:64008672:-	ONLY_REF_SPLICE	YES	8158	83	0	0.02	0.0112	0.0112	CD74->CD74_molecule,Oncogene{Bushman},chr5:149781200-149792492:-,HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000069
HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	24	1	0.08	0.0112	0.0112	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS611T_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0224	TRUE	347	1186	183	220	0	FALSE	ACH-000069
SF767_CERVIX	ATF7--CALCOCO1	115	15	ATF7	1137	chr12:54020063:-	CALCOCO1	26784	chr12:54119050:-	ONLY_REF_SPLICE	YES	6	9	0.96	0.94	1.2678	0.1654	LOCAL_REARRANGEMENT:-:[84704],ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,CALCOCO1->calcium_binding_and_coiled-coil_domain_1,chr12:54104903-54121529:-	SF767_CERVIX	0.94	0.96	1.4332	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	FLNB--SLMAP	93	95	FLNB	1457	chr3:57994583:+	SLMAP	87089	chr3:57908616:+	ONLY_REF_SPLICE	YES	81	136	0.7	0.58	1.0252	1.0473	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	SF767_CERVIX	0.58	0.7	2.0725	TRUE	0	1	0	1	1	TRUE	ACH-000490
SF767_CERVIX	TIMM23B--LINC00843	41	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.97	0.452	0.2205	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SF767_CERVIX	0.97	1	0.6725	TRUE	508	994	45	981	0	FALSE	ACH-000490
SF767_CERVIX	KRT5--MT-CO3	30	15	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	10817	23847	0	0	0.3307	0.1654	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SF767_CERVIX	0	0	0.4961	FALSE	0	0	0	18	0	FALSE	ACH-000490
SF767_CERVIX	FLNB--SLMAP	20	51	FLNB	1457	chr3:57994583:+	SLMAP	89670	chr3:57913023:+	ONLY_REF_SPLICE	YES	81	167	0.47	0.3	0.2205	0.5622	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	SF767_CERVIX	0.3	0.47	0.7827	TRUE	0	1	0	1	1	TRUE	ACH-000490
SF767_CERVIX	KANSL1--ARL17B	26	22	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	42	114	0.53	0.3	0.2866	0.2425	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SF767_CERVIX	0.3	0.53	0.5291	TRUE	181	1564	124	196	0	FALSE	ACH-000490
SF767_CERVIX	MT-TA--MT-TC	27	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2977	0.0331	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SF767_CERVIX	1	1	0.3308	FALSE	462	80	0	856	0	FALSE	ACH-000490
SF767_CERVIX	TIMM23--RP11-464F9.1	26	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	341	14	0.09	0.7	0.2866	0.0661	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SF767_CERVIX	0.09	0.7	0.3527	TRUE	519	3926	326	965	0	FALSE	ACH-000490
SF767_CERVIX	WI2-1896O14.1--RP11-353N4.1	20	18	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2205	0.1984	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	SF767_CERVIX	1	1	0.4189	TRUE	361	258	24	38	0	FALSE	ACH-000490
SF767_CERVIX	TET3--IL4R	23	2	TET3	1454	chr2:74230293:+	IL4R	27932	chr16:27341387:+	ONLY_REF_SPLICE	YES	0	10	1	0.71	0.2536	0.022	TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3,IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor	SF767_CERVIX	0.71	1	0.2756	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	ZNF654--HMGB2	23	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2536	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SF767_CERVIX	1	1	0.2536	TRUE	0	0	0	518	0	FALSE	ACH-000490
SF767_CERVIX	GRAMD2--HEXA	22	1	GRAMD2	1055	chr15:72490072:-	HEXA	26163	chr15:72648958:-	ONLY_REF_SPLICE	YES	0	188	1	0.11	0.2425	0.011	GRAMD2->GRAM_domain_containing_2,chr15:72452148-72490126:-,HEXA->chr15:72635775-72668817:-,hexosaminidase_subunit_alpha	SF767_CERVIX	0.11	1	0.2535	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	NPM1P24--SET	20	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2205	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SF767_CERVIX	1	1	0.2205	TRUE	0	0	0	434	0	FALSE	ACH-000490
SF767_CERVIX	TET3--IL4R	16	2	TET3	1454	chr2:74230293:+	IL4R	30170	chr16:27351507:+	ONLY_REF_SPLICE	YES	0	27	1	0.4	0.1764	0.022	TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3,IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor	SF767_CERVIX	0.4	1	0.1984	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	RP11-123O10.4--GRIP1	14	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1543	0.0441	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SF767_CERVIX	1	1	0.1984	FALSE	416	2512	207	587	0	FALSE	ACH-000490
SF767_CERVIX	FLNB--SLMAP	1	55	FLNB	1457	chr3:57994583:+	SLMAP	88224	chr3:57911572:+	ONLY_REF_SPLICE	YES	81	160	0.41	0.26	0.011	0.6063	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	SF767_CERVIX	0.26	0.41	0.6173	TRUE	0	1	0	1	1	TRUE	ACH-000490
SF767_CERVIX	TGFA--SBDSP1	10	17	TGFA	3064	chr2:70741991:-	SBDSP1	17268	chr7:72301272:+	ONLY_REF_SPLICE	YES	28	201	0.49	0.12	0.1102	0.1874	TGFA->Oncogene{Bushman},chr2:70674412-70781325:-,transforming_growth_factor_alpha,SBDSP1->Shwachman-Bodian-Diamond_syndrome_pseudogene_1,chr7:72300004-72307909:+	SF767_CERVIX	0.12	0.49	0.2976	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	TGFA--SBDSP1	9	16	TGFA	3064	chr2:70741991:-	SBDSP1	17327	chr7:72301331:+	INCL_NON_REF_SPLICE	YES	28	207	0.47	0.11	0.0992	0.1764	TGFA->Oncogene{Bushman},chr2:70674412-70781325:-,transforming_growth_factor_alpha,SBDSP1->Shwachman-Bodian-Diamond_syndrome_pseudogene_1,chr7:72300004-72307909:+	SF767_CERVIX	0.11	0.47	0.2756	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	ATF7--CALCOCO1	9	15	ATF7	1465	chr12:54019735:-	CALCOCO1	26784	chr12:54119050:-	ONLY_REF_SPLICE	YES	12	9	0.67	0.73	0.0992	0.1654	LOCAL_REARRANGEMENT:-:[84704],ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,CALCOCO1->calcium_binding_and_coiled-coil_domain_1,chr12:54104903-54121529:-	SF767_CERVIX	0.67	0.73	0.2646	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	MT-ATP6--MT-CO2	11	5	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	44	4	0.27	0.8	0.1213	0.0551	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF767_CERVIX	0.27	0.8	0.1764	FALSE	59	21	0	114	0	FALSE	ACH-000490
SF767_CERVIX	MT-ATP6--MT-CO2	10	7	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	307	11	0.05	0.61	0.1102	0.0772	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF767_CERVIX	0.05	0.61	0.1874	FALSE	59	21	0	114	0	FALSE	ACH-000490
SF767_CERVIX	MT-ATP6--MT-CO2	5	26	MT-ATP6	1408	chrM:8934:+	MT-CO2	4720	chrM:7624:+	INCL_NON_REF_SPLICE	NO	155	0	0.17	1	0.0551	0.2866	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF767_CERVIX	0.17	1	0.3417	FALSE	59	21	0	114	0	FALSE	ACH-000490
SF767_CERVIX	MARK2--RTN3	11	1	MARK2	1633	chr11:63607032:+	RTN3	33435	chr11:63517463:+	ONLY_REF_SPLICE	YES	38	758	0.24	0.02	0.1213	0.011	LOCAL_REARRANGEMENT:+:[79037],MARK2->chr11:63606400-63678491:+,microtubule_affinity_regulating_kinase_2,RTN3->chr11:63448918-63527363:+,reticulon_3	SF767_CERVIX	0.02	0.24	0.1323	TRUE	0	1	0	2	1	FALSE	ACH-000490
SF767_CERVIX	RP11-711M9.1--IL4R	1	40	RP11-711M9.1	1181	chr2:74213833:+	IL4R	9578	chr16:27341387:+	ONLY_REF_SPLICE	YES	0	10	1	0.8	0.011	0.441	RP11-711M9.1->chr2:74213653-74220867:+,IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor	SF767_CERVIX	0.8	1	0.452	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	SPG11--MRPL52	11	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1213	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	SF767_CERVIX	1	1	0.1213	TRUE	38	11	0	19	0	FALSE	ACH-000490
SF767_CERVIX	RP11-711M9.1--IL4R	3	31	RP11-711M9.1	1181	chr2:74213833:+	IL4R	11816	chr16:27351507:+	ONLY_REF_SPLICE	YES	0	27	1	0.56	0.0331	0.3417	RP11-711M9.1->chr2:74213653-74220867:+,IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor	SF767_CERVIX	0.56	1	0.3748	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	C15orf57--CBX3	7	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	98	80	0.14	0.17	0.0772	0.0992	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SF767_CERVIX	0.14	0.17	0.1764	TRUE	267	562	48	632	0	FALSE	ACH-000490
SF767_CERVIX	KIAA0100--FAM222B	7	9	KIAA0100	11378	chr17:26961535:-	FAM222B	35327	chr17:27093725:-	ONLY_REF_SPLICE	YES	107	24	0.13	0.4	0.0772	0.0992	KIAA0100->KIAA0100,chr17:26941458-26972472:-,FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B	SF767_CERVIX	0.13	0.4	0.1764	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	CALM3--MT-ND4L	8	4	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1701	0	0.01	1	0.0882	0.0441	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SF767_CERVIX	0.01	1	0.1323	FALSE	1	1	0	107	0	FALSE	ACH-000490
SF767_CERVIX	REV3L--RPL28	9	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0992	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	SF767_CERVIX	1	1	0.0992	TRUE	22	156	2	142	0	FALSE	ACH-000490
SF767_CERVIX	MT-TA--MT-TC	8	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0882	0.022	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SF767_CERVIX	1	1	0.1102	FALSE	462	80	0	856	0	FALSE	ACH-000490
SF767_CERVIX	TGFA--SBDSP1	5	14	TGFA	3064	chr2:70741991:-	SBDSP1	18178	chr7:72302182:+	ONLY_REF_SPLICE	YES	28	224	0.4	0.08	0.0551	0.1543	TGFA->Oncogene{Bushman},chr2:70674412-70781325:-,transforming_growth_factor_alpha,SBDSP1->Shwachman-Bodian-Diamond_syndrome_pseudogene_1,chr7:72300004-72307909:+	SF767_CERVIX	0.08	0.4	0.2094	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	GON4L--ARHGEF2	8	1	GON4L	3780	chr1:155823067:-	ARHGEF2	49694	chr1:155959142:-	ONLY_REF_SPLICE	YES	18	1	0.33	0.9	0.0882	0.011	LOCAL_REARRANGEMENT:-:[87439],GON4L->chr1:155719508-155829191:-,gon-4_like,ARHGEF2->Oncogene{Bushman},Rho/Rac_guanine_nucleotide_exchange_factor_2,chr1:155916630-155976861:-	SF767_CERVIX	0.33	0.9	0.0992	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	MT-ATP6--MT-CO2	5	12	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	81	3	0.17	0.85	0.0551	0.1323	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF767_CERVIX	0.17	0.85	0.1874	FALSE	59	21	0	114	0	FALSE	ACH-000490
SF767_CERVIX	MT-ATP6--MT-CO2	5	12	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	82	4	0.17	0.81	0.0551	0.1323	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF767_CERVIX	0.17	0.81	0.1874	FALSE	59	21	0	114	0	FALSE	ACH-000490
SF767_CERVIX	MT-TA--MT-TC	7	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0772	0.0331	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SF767_CERVIX	1	1	0.1103	FALSE	462	80	0	856	0	FALSE	ACH-000490
SF767_CERVIX	JUP--MT-CO3	7	2	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	2297	24401	0	0	0.0772	0.022	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SF767_CERVIX	0	0	0.0992	FALSE	0	0	0	33	0	FALSE	ACH-000490
SF767_CERVIX	KRT5--MT-CO3	4	14	KRT5	1489	chr12:52913983:-	MT-CO3	10505	chrM:9598:+	INCL_NON_REF_SPLICE	YES	11533	23778	0	0	0.0441	0.1543	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SF767_CERVIX	0	0	0.1984	FALSE	0	0	0	18	0	FALSE	ACH-000490
SF767_CERVIX	KRT5--MT-CO3	4	13	KRT5	1489	chr12:52913983:-	MT-CO3	10515	chrM:9608:+	INCL_NON_REF_SPLICE	YES	11533	24562	0	0	0.0441	0.1433	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SF767_CERVIX	0	0	0.1874	FALSE	0	0	0	18	0	FALSE	ACH-000490
SF767_CERVIX	MT-ATP6--MT-CO2	6	5	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	37	3	0.23	0.79	0.0661	0.0551	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF767_CERVIX	0.23	0.79	0.1212	FALSE	59	21	0	114	0	FALSE	ACH-000490
SF767_CERVIX	MT-ATP6--MT-CO2	4	12	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	81	3	0.16	0.84	0.0441	0.1323	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF767_CERVIX	0.16	0.84	0.1764	FALSE	59	21	0	114	0	FALSE	ACH-000490
SF767_CERVIX	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0661	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SF767_CERVIX	1	1	0.0661	TRUE	465	1949	224	605	0	FALSE	ACH-000490
SF767_CERVIX	JUP--MT-CO3	4	6	JUP	8242	chr17:39923795:-	MT-CO3	24128	chrM:9574:+	INCL_NON_REF_SPLICE	YES	2232	24255	0	0	0.0441	0.0661	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SF767_CERVIX	0	0	0.1102	FALSE	0	0	0	33	0	FALSE	ACH-000490
SF767_CERVIX	JUP--MT-CO3	3	10	JUP	15104	chr17:39911919:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	2056	24401	0.01	0	0.0331	0.1102	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SF767_CERVIX	0	0.01	0.1433	FALSE	0	0	0	2	0	FALSE	ACH-000490
SF767_CERVIX	KIAA0100--FAM222B	3	9	KIAA0100	11378	chr17:26961535:-	FAM222B	32780	chr17:27117443:-	ONLY_REF_SPLICE	YES	107	21	0.1	0.36	0.0331	0.0992	KIAA0100->KIAA0100,chr17:26941458-26972472:-,FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B	SF767_CERVIX	0.1	0.36	0.1323	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	MT-ATP6--MT-CO2	3	8	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	70	4	0.14	0.73	0.0331	0.0882	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF767_CERVIX	0.14	0.73	0.1213	FALSE	59	21	0	114	0	FALSE	ACH-000490
SF767_CERVIX	VDAC2--RPL26	5	0	VDAC2	1790	chr10:76970701:+	RPL26	15068	chr17:8286512:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	VDAC2->chr10:76969912-76991206:+,voltage_dependent_anion_channel_2,RPL26->Oncogene{Bushman},chr17:8280838-8286531:-,ribosomal_protein_L26	SF767_CERVIX	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	MARK2--RTN3	4	3	MARK2	7102	chr11:63656436:+	RTN3	33435	chr11:63517463:+	ONLY_REF_SPLICE	YES	40	758	0.15	0.01	0.0441	0.0331	LOCAL_REARRANGEMENT:+:[79037],MARK2->chr11:63606400-63678491:+,microtubule_affinity_regulating_kinase_2,RTN3->chr11:63448918-63527363:+,reticulon_3	SF767_CERVIX	0.01	0.15	0.0772	FALSE	0	0	0	1	0	FALSE	ACH-000490
SF767_CERVIX	MT-ATP6--MT-CO2	4	3	MT-ATP6	1138	chrM:8664:+	MT-CO2	4988	chrM:7892:+	INCL_NON_REF_SPLICE	YES	63	11	0.1	0.39	0.0441	0.0331	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF767_CERVIX	0.1	0.39	0.0772	FALSE	59	21	0	114	0	FALSE	ACH-000490
SF767_CERVIX	RP11-444D3.1--SOX5	4	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0441	0.0331	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SF767_CERVIX	1	1	0.0772	TRUE	477	1352	189	275	0	FALSE	ACH-000490
SF767_CERVIX	MT-ATP6--MT-CO2	4	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	37	11	0.14	0.35	0.0441	0.022	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF767_CERVIX	0.14	0.35	0.0661	FALSE	59	21	0	114	0	FALSE	ACH-000490
SF767_CERVIX	GRAMD2--HEXA	4	1	GRAMD2	1055	chr15:72490072:-	HEXA	21236	chr15:72654807:-	ONLY_REF_SPLICE	YES	0	192	1	0.03	0.0441	0.011	GRAMD2->GRAM_domain_containing_2,chr15:72452148-72490126:-,HEXA->chr15:72635775-72668817:-,hexosaminidase_subunit_alpha	SF767_CERVIX	0.03	1	0.0551	TRUE	0	0	0	1	0	FALSE	ACH-000490
SF767_CERVIX	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SF767_CERVIX	1	1	0.0441	FALSE	462	80	0	856	0	FALSE	ACH-000490
SF767_CERVIX	RP1-93I3.1--PLS3	4	0	RP1-93I3.1	1106	chrX:114796953:-	PLS3	11182	chrX:114844555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0441	0	NEIGHBORS_OVERLAP:-:+:[1557],RP1-93I3.1->chrX:114752490-114797058:-,PLS3->chrX:114795501-114885181:+,plastin_3	SF767_CERVIX	1	1	0.0441	FALSE	0	1	0	2	0	FALSE	ACH-000490
SF767_CERVIX	KRT5--EIF5A	3	3	KRT5	1746	chr12:52913726:-	EIF5A	10813	chr17:7211017:+	INCL_NON_REF_SPLICE	YES	17474	93	0	0.06	0.0331	0.0331	GTEx&tcga_normals:1/3694=0.03%,KRT5->chr12:52908359-52914471:-,keratin_5,EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A	SF767_CERVIX	0	0.06	0.0662	FALSE	0	0	0	1	0	FALSE	ACH-000490
SF767_CERVIX	SLC12A2--CTC-228N24.3	3	2	SLC12A2	7895	chr5:127471500:+	CTC-228N24.3	44123	chr5:127359990:-	ONLY_REF_SPLICE	YES	35	105	0.12	0.05	0.0331	0.022	GTEx_FI:{Small_Intestine=[count:1=pct:1.8],Skin=[count:1=pct:0.3]},LOCAL_INVERSION:+:-:[594],SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,CTC-228N24.3->chr5:127276118-127418864:-	SF767_CERVIX	0.05	0.12	0.0551	TRUE	0	0	0	1	0	FALSE	ACH-000490
SF767_CERVIX	EIF4G3--ECE1	2	5	EIF4G3	6163	chr1:21437816:-	ECE1	78007	chr1:21548335:-	ONLY_REF_SPLICE	YES	5	157	0.58	0.04	0.022	0.0551	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1],LOCAL_REARRANGEMENT:-:[40363],EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3,ECE1->chr1:21543740-21671997:-,endothelin_converting_enzyme_1	SF767_CERVIX	0.04	0.58	0.0771	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	RP11-624L4.1--RP11-265N7.1	3	1	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	25	1	0.14	0.8	0.0331	0.011	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	SF767_CERVIX	0.14	0.8	0.0441	FALSE	0	20	1	20	0	FALSE	ACH-000490
SF767_CERVIX	SLC1A5--MT-ND4L	3	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	659	0	0.01	1	0.0331	0.011	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SF767_CERVIX	0.01	1	0.0441	FALSE	0	0	0	189	0	FALSE	ACH-000490
SF767_CERVIX	BRI3BP--UBC	3	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0331	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	SF767_CERVIX	1	1	0.0331	TRUE	5	99	5	34	0	FALSE	ACH-000490
SF767_CERVIX	FTH1--ACTB	3	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SF767_CERVIX	1	1	0.0331	TRUE	1	0	0	97	0	FALSE	ACH-000490
SF767_CERVIX	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SF767_CERVIX	1	1	0.0331	TRUE	0	0	0	434	0	FALSE	ACH-000490
SF767_CERVIX	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SF767_CERVIX	1	1	0.0331	TRUE	0	1	0	48	1	FALSE	ACH-000490
SF767_CERVIX	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	113	1	0.03	0.022	0.022	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SF767_CERVIX	0.03	1	0.044	FALSE	16	356	14	466	0	FALSE	ACH-000490
SF767_CERVIX	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.022	0.022	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF767_CERVIX	0.8	1	0.044	FALSE	515	4851	409	746	0	FALSE	ACH-000490
SF767_CERVIX	RALY--LSM4	2	1	RALY	3636	chr20:32619410:+	LSM4	19037	chr19:18426875:-	ONLY_REF_SPLICE	YES	426	20	0.01	0.13	0.022	0.011	RALY->RALY_heterogeneous_nuclear_ribonucleoprotein,chr20:32581452-32696114:+,LSM4->LSM4_homolog,_U6_small_nuclear_RNA_and_mRNA_degradation_associated,chr19:18417040-18434084:-	SF767_CERVIX	0.01	0.13	0.033	FALSE	0	0	0	1	0	FALSE	ACH-000490
SF767_CERVIX	AHNAK--SMC4	2	0	AHNAK	5883	chr11:62302475:-	SMC4	44348	chr3:160138528:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-,SMC4->chr3:160117062-160152750:+,structural_maintenance_of_chromosomes_4	SF767_CERVIX	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	DAD1--TNPO3	2	0	DAD1	1239	chr14:23057937:-	TNPO3	10464	chr7:128658211:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	DAD1->chr14:23033805-23058175:-,defender_against_cell_death_1,TNPO3->chr7:128594948-128695198:-,transportin_3	SF767_CERVIX	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	HECTD1--NAA38	2	0	HECTD1	9983	chr14:31641067:-	NAA38	53517	chr7:117831966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,NAA38->N(alpha)-acetyltransferase_38,_NatC_auxiliary_subunit,chr7:117824086-117832878:+	SF767_CERVIX	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	RBMX--KRT4	2	0	RBMX	1168	chrX:135962756:-	KRT4	16341	chr12:53207900:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RBMX->RNA_binding_motif_protein,_X-linked,chrX:135930163-135962923:-,KRT4->chr12:53200333-53208335:-,keratin_4	SF767_CERVIX	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.011	0.0441	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF767_CERVIX	0.83	1	0.0551	FALSE	407	2205	196	549	0	FALSE	ACH-000490
SF767_CERVIX	TET2--PPA2	2	0	TET2	2105	chr4:106068136:+	PPA2	31604	chr4:106377902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1,Heart_-_Atrial_Appendage=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[89261],TET2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:106067032-106200973:+,tet_methylcytosine_dioxygenase_2,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	SF767_CERVIX	1	1	0.022	TRUE	0	3	0	2	1	TRUE	ACH-000490
SF767_CERVIX	USP32--APPBP2	2	0	USP32	3790	chr17:58469243:-	APPBP2	53938	chr17:58543820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],LOCAL_REARRANGEMENT:-:[20689],USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-	SF767_CERVIX	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	YWHAE--CRK	2	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SF767_CERVIX	1	1	0.022	TRUE	6	50	7	115	0	FALSE	ACH-000490
SF767_CERVIX	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0.0331	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SF767_CERVIX	1	1	0.0441	FALSE	93	270	15	244	0	FALSE	ACH-000490
SF767_CERVIX	EFNB2--ARGLU1	1	2	EFNB2	2556	chr13:107164877:-	ARGLU1	14927	chr13:107212005:-	ONLY_REF_SPLICE	YES	125	383	0.02	0.01	0.011	0.022	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[6559],EFNB2->chr13:107142079-107187462:-,ephrin_B2,ARGLU1->arginine_and_glutamate_rich_1,chr13:107194021-107220512:-	SF767_CERVIX	0.01	0.02	0.033	FALSE	0	0	0	2	0	FALSE	ACH-000490
SF767_CERVIX	RNF152--RP11-879F14.1	1	2	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	NO	10	0	0.23	1	0.011	0.022	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	SF767_CERVIX	0.23	1	0.033	FALSE	275	472	65	43	0	FALSE	ACH-000490
SF767_CERVIX	SERINC5--CTC-431G16.2	1	2	SERINC5	3166	chr5:79498705:-	CTC-431G16.2	25243	chr5:79099714:-	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.011	0.022	SERINC5->chr5:79407050-79551898:-,serine_incorporator_5,CTC-431G16.2->chr5:79070171-79112013:-	SF767_CERVIX	0.27	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000490
SF767_CERVIX	ACSL3--CUL3	1	1	ACSL3	1325	chr2:223725976:+	CUL3	32618	chr2:225422573:-	ONLY_REF_SPLICE	YES	252	46	0.01	0.04	0.011	0.011	ACSL3->Oncogene{Bushman},acyl-CoA_synthetase_long-chain_family_member_3,chr2:223725652-223809357:+,CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3	SF767_CERVIX	0.01	0.04	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000490
SF767_CERVIX	CYTH1--SAE1	1	1	CYTH1	9147	chr17:76704279:-	SAE1	41166	chr19:47712416:+	ONLY_REF_SPLICE	NO	113	647	0.02	0	0.011	0.011	CYTH1->chr17:76670130-76778379:-,cytohesin_1,SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+	SF767_CERVIX	0	0.02	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000490
SF767_CERVIX	DPH6-AS1--RP11-684B21.1	1	1	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.011	0.011	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	SF767_CERVIX	0.33	1	0.022	TRUE	17	119	17	33	0	FALSE	ACH-000490
SF767_CERVIX	EGFR--GS1-18A18.2	1	1	EGFR	1345	chr7:55087058:+	GS1-18A18.2	46786	chr7:54643986:-	ONLY_REF_SPLICE	YES	122	0	0.02	1	0.011	0.011	EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,GS1-18A18.2->chr7:54643745-54646487:-	SF767_CERVIX	0.02	1	0.022	TRUE	0	0	0	1	0	FALSE	ACH-000490
SF767_CERVIX	GGACT--PCCA	1	1	GGACT	3102	chr13:101236079:-	PCCA	34208	chr13:101020726:+	ONLY_REF_SPLICE	YES	24	108	0.08	0.02	0.011	0.011	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	SF767_CERVIX	0.02	0.08	0.022	TRUE	0	0	0	2	0	FALSE	ACH-000490
SF767_CERVIX	HELZ--SMURF2	1	1	HELZ	38385	chr17:65103285:-	SMURF2	68189	chr17:62553840:-	ONLY_REF_SPLICE	YES	93	100	0.02	0.02	0.011	0.011	HELZ->chr17:65066554-65242105:-,helicase_with_zinc_finger,SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-	SF767_CERVIX	0.02	0.02	0.022	TRUE	0	0	0	1	0	FALSE	ACH-000490
SF767_CERVIX	KAT6B--ADK	1	1	KAT6B	5638	chr10:76603236:+	ADK	38774	chr10:76153899:+	ONLY_REF_SPLICE	YES	38	1851	0.05	0	0.011	0.011	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:2],KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B,ADK->adenosine_kinase,chr10:75910960-76469061:+	SF767_CERVIX	0	0.05	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000490
SF767_CERVIX	MARK2--RTN3	1	1	MARK2	5684	chr11:63647700:+	RTN3	33435	chr11:63517463:+	ONLY_REF_SPLICE	YES	40	758	0.05	0	0.011	0.011	LOCAL_REARRANGEMENT:+:[79037],MARK2->chr11:63606400-63678491:+,microtubule_affinity_regulating_kinase_2,RTN3->chr11:63448918-63527363:+,reticulon_3	SF767_CERVIX	0	0.05	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000490
SF767_CERVIX	NELFA--NOC4L	1	1	NELFA	5759	chr4:2010477:-	NOC4L	27591	chr12:132635526:+	ONLY_REF_SPLICE	YES	177	46	0.01	0.04	0.011	0.011	NELFA->chr4:1984441-2043630:-,negative_elongation_factor_complex_member_A,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	SF767_CERVIX	0.01	0.04	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000490
SF767_CERVIX	PSPH--GBAS	1	1	PSPH	1467	chr7:56118831:-	GBAS	22080	chr7:56049903:+	ONLY_REF_SPLICE	YES	167	445	0.01	0	0.011	0.011	LOCAL_INVERSION:-:+:[10870],PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase,GBAS->chr7:56019486-56067874:+,glioblastoma_amplified_sequence	SF767_CERVIX	0	0.01	0.022	FALSE	0	0	0	3	0	FALSE	ACH-000490
SU8686_PANCREAS	PAK4--LEUTX	166	105	PAK4	6338	chr19:39660397:+	LEUTX	21269	chr19:40275167:+	ONLY_REF_SPLICE	YES	418	0	0.39	1	1.9628	1.2415	{Klijn_CCL:Pancreas=1},PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,LEUTX->chr19:40267235-40276775:+,leucine_twenty_homeobox	SU8686_PANCREAS	0.39	1	3.2043	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TN	123	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4543	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SU8686_PANCREAS	1	1	1.4543	FALSE	369	2501	205	193	0	FALSE	ACH-000114
SU8686_PANCREAS	RHPN2--CPNE8	106	40	RHPN2	2221	chr19:33535155:-	CPNE8	45125	chr12:39071356:-	ONLY_REF_SPLICE	YES	113	52	0.56	0.74	1.2533	0.473	{Klijn_CCL:Pancreas=1},RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2,CPNE8->chr12:39040624-39301232:-,copine_8	SU8686_PANCREAS	0.56	0.74	1.7263	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	MRPS10--DIP2B	111	0	MRPS10	1064	chr6:42185540:-	DIP2B	17509	chr12:51068257:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.3125	0	MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10,DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B	SU8686_PANCREAS	1	1	1.3125	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TC	98	15	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1587	0.1774	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SU8686_PANCREAS	1	1	1.3361	FALSE	462	80	0	856	0	FALSE	ACH-000114
SU8686_PANCREAS	FOCAD--CDKN2B-AS1	69	84	FOCAD	11757	chr9:20765072:+	CDKN2B-AS1	76156	chr9:22077678:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.8158	0.9932	FOCAD->chr9:20658308-20995954:+,focadhesin,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	SU8686_PANCREAS	1	1	1.809	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	PPL--SAA1	69	1	PPL	10800	chr16:4945352:-	SAA1	28759	chr11:18291260:+	INCL_NON_REF_SPLICE	YES	253	4499	0.22	0.02	0.8158	0.0118	GTEx&tcga_normals:17/3694=0.46%,GTEx_FI:{Liver=[count:7=pct:5.8]},PPL->chr16:4932508-5010742:-,periplakin,SAA1->chr11:18287721-18291524:+,serum_amyloid_A1	SU8686_PANCREAS	0.02	0.22	0.8276	TRUE	6	3	0	1	0	FALSE	ACH-000114
SU8686_PANCREAS	ZNF461--CLIP3	62	20	ZNF461	5143	chr19:37147350:-	CLIP3	20335	chr19:36510208:-	ONLY_REF_SPLICE	YES	26	14	0.76	0.85	0.7331	0.2365	ZNF461->chr19:37128094-37157755:-,zinc_finger_protein_461,CLIP3->CAP-Gly_domain_containing_linker_protein_3,chr19:36505562-36524245:-	SU8686_PANCREAS	0.76	0.85	0.9696	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	FOCAD--CDKN2B-AS1	36	71	FOCAD	11757	chr9:20765072:+	CDKN2B-AS1	77369	chr9:22092307:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4257	0.8395	FOCAD->chr9:20658308-20995954:+,focadhesin,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	SU8686_PANCREAS	1	1	1.2652	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	MT-ND6--MT-TE	50	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5912	0.0355	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SU8686_PANCREAS	1	1	0.6267	FALSE	499	1288	110	792	0	FALSE	ACH-000114
SU8686_PANCREAS	TEAD4--AMN1	44	26	TEAD4	1711	chr12:3069206:+	AMN1	20374	chr12:31862359:-	ONLY_REF_SPLICE	YES	37	29	0.65	0.71	0.5203	0.3074	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-	SU8686_PANCREAS	0.65	0.71	0.8277	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	FOCAD--CDKN2B-AS1	38	48	FOCAD	11757	chr9:20765072:+	CDKN2B-AS1	78531	chr9:22096371:+	ONLY_REF_SPLICE	YES	0	5	1	0.95	0.4493	0.5675	FOCAD->chr9:20658308-20995954:+,focadhesin,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	SU8686_PANCREAS	0.95	1	1.0168	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TN	23	101	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2719	1.1942	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SU8686_PANCREAS	1	1	1.4661	FALSE	369	2501	205	193	0	FALSE	ACH-000114
SU8686_PANCREAS	EGLN2--C12orf60	38	29	EGLN2	3420	chr19:41307320:+	C12orf60	19705	chr12:15056941:+	ONLY_REF_SPLICE	YES	882	4	0.07	0.94	0.4493	0.3429	EGLN2->chr19:41304901-41314338:+,egl-9_family_hypoxia_inducible_factor_2,C12orf60->chr12:14956506-15059520:+,chromosome_12_open_reading_frame_60	SU8686_PANCREAS	0.07	0.94	0.7922	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	TIMM23B--LINC00843	42	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4966	0.1301	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SU8686_PANCREAS	1	1	0.6267	TRUE	508	994	45	981	0	FALSE	ACH-000114
SU8686_PANCREAS	AL589743.1--RP11-536C10.17	36	4	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	9	0	0.82	1	0.4257	0.0473	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	SU8686_PANCREAS	0.82	1	0.473	TRUE	0	33	0	45	33	FALSE	ACH-000114
SU8686_PANCREAS	AP000525.9--LA16c-60G3.6	36	4	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	9	0	0.82	1	0.4257	0.0473	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SU8686_PANCREAS	0.82	1	0.473	TRUE	0	42	0	133	42	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND6--MT-TE	29	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3429	0.1537	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SU8686_PANCREAS	1	1	0.4966	FALSE	499	1288	110	792	0	FALSE	ACH-000114
SU8686_PANCREAS	OR51S1--TP53I11	32	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3784	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SU8686_PANCREAS	1	1	0.3784	TRUE	402	216	10	229	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TN	14	68	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1655	0.804	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SU8686_PANCREAS	1	1	0.9695	FALSE	369	2501	205	193	0	FALSE	ACH-000114
SU8686_PANCREAS	FOCAD--CDKN2B-AS1	26	19	FOCAD	11757	chr9:20765072:+	CDKN2B-AS1	80524	chr9:22112319:+	ONLY_REF_SPLICE	YES	0	21	1	0.68	0.3074	0.2247	FOCAD->chr9:20658308-20995954:+,focadhesin,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	SU8686_PANCREAS	0.68	1	0.5321	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TC	23	16	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2719	0.1892	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SU8686_PANCREAS	1	1	0.4611	FALSE	462	80	0	856	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TN	19	31	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2247	0.3665	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SU8686_PANCREAS	1	1	0.5912	FALSE	369	2501	205	193	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TN	23	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2719	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SU8686_PANCREAS	1	1	0.2719	FALSE	369	2501	205	193	0	FALSE	ACH-000114
SU8686_PANCREAS	TIMM23--RP11-464F9.1	22	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	75	4	0.24	0.86	0.2601	0.0236	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SU8686_PANCREAS	0.24	0.86	0.2837	TRUE	519	3926	326	965	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND6--MT-TE	21	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2483	0.0236	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SU8686_PANCREAS	1	1	0.2719	FALSE	499	1288	110	792	0	FALSE	ACH-000114
SU8686_PANCREAS	TEAD4--AMN1	18	14	TEAD4	1711	chr12:3069206:+	AMN1	22230	chr12:31854941:-	ONLY_REF_SPLICE	YES	37	72	0.46	0.31	0.2128	0.1655	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-	SU8686_PANCREAS	0.31	0.46	0.3783	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	MT-CO3--MT-ATP6	5	61	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	4	6	0.94	0.92	0.0591	0.7213	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SU8686_PANCREAS	0.92	0.94	0.7804	FALSE	189	492	56	216	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-CO3--MT-ATP6	5	60	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	6	0.97	0.92	0.0591	0.7094	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SU8686_PANCREAS	0.92	0.97	0.7685	FALSE	189	492	56	216	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	20	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2365	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	1	1	0.2365	FALSE	230	193	14	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TN	20	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2365	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SU8686_PANCREAS	1	1	0.2365	FALSE	369	2501	205	193	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-CO3--MT-ATP6	4	63	MT-CO3	1205	chrM:9411:+	MT-ATP6	5179	chrM:8921:+	INCL_NON_REF_SPLICE	YES	4	71	0.94	0.49	0.0473	0.7449	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SU8686_PANCREAS	0.49	0.94	0.7922	FALSE	189	492	56	216	0	FALSE	ACH-000114
SU8686_PANCREAS	RP11-96H19.1--RP11-446N19.1	17	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.201	0.1301	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SU8686_PANCREAS	0.97	1	0.3311	FALSE	515	4851	409	746	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-CO3--MT-ATP6	3	64	MT-CO3	1533	chrM:9739:+	MT-ATP6	5050	chrM:8792:+	INCL_NON_REF_SPLICE	YES	3	11	0.96	0.86	0.0355	0.7567	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SU8686_PANCREAS	0.86	0.96	0.7922	FALSE	189	492	56	216	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-CO3--MT-ATP6	3	62	MT-CO3	1450	chrM:9656:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	4	5	0.94	0.93	0.0355	0.7331	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SU8686_PANCREAS	0.93	0.94	0.7686	FALSE	189	492	56	216	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-CO3--MT-ATP6	3	61	MT-CO3	1314	chrM:9520:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	3	4	0.96	0.94	0.0355	0.7213	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SU8686_PANCREAS	0.94	0.96	0.7568	FALSE	189	492	56	216	0	FALSE	ACH-000114
SU8686_PANCREAS	NR1H2--CYP2A7	18	1	NR1H2	2218	chr19:50841333:+	CYP2A7	21216	chr19:41382492:-	INCL_NON_REF_SPLICE	YES	0	2	1	0.9	0.2128	0.0118	NR1H2->chr19:50832910-50886239:+,nuclear_receptor_subfamily_1_group_H_member_2,CYP2A7->chr19:41381344-41388657:-,cytochrome_P450_family_2_subfamily_A_member_7	SU8686_PANCREAS	0.9	1	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	RP11-123O10.4--GRIP1	17	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.201	0.0473	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SU8686_PANCREAS	1	1	0.2483	FALSE	416	2512	207	587	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TN	5	51	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0.603	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SU8686_PANCREAS	1	1	0.6621	FALSE	369	2501	205	193	0	FALSE	ACH-000114
SU8686_PANCREAS	NRIP1--AF127936.7	17	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.201	0.0118	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SU8686_PANCREAS	0.95	1	0.2128	FALSE	292	1546	117	613	0	FALSE	ACH-000114
SU8686_PANCREAS	EGLN2--C12orf60	9	32	EGLN2	8555	chr19:41313179:+	C12orf60	19705	chr12:15056941:+	ONLY_REF_SPLICE	YES	752	4	0.05	0.91	0.1064	0.3784	EGLN2->chr19:41304901-41314338:+,egl-9_family_hypoxia_inducible_factor_2,C12orf60->chr12:14956506-15059520:+,chromosome_12_open_reading_frame_60	SU8686_PANCREAS	0.05	0.91	0.4848	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	PAK4--FCGBP	16	1	PAK4	8431	chr19:39664650:+	FCGBP	54557	chr19:40370532:-	ONLY_REF_SPLICE	YES	328	175	0.05	0.09	0.1892	0.0118	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,FCGBP->Fc_fragment_of_IgG_binding_protein,chr19:40353963-40440533:-	SU8686_PANCREAS	0.05	0.09	0.201	TRUE	0	0	0	1	0	FALSE	ACH-000114
SU8686_PANCREAS	EGLN2--C12orf60	7	33	EGLN2	8555	chr19:41313179:+	C12orf60	17490	chr12:15052103:+	ONLY_REF_SPLICE	YES	752	3	0.05	0.93	0.0828	0.3902	EGLN2->chr19:41304901-41314338:+,egl-9_family_hypoxia_inducible_factor_2,C12orf60->chr12:14956506-15059520:+,chromosome_12_open_reading_frame_60	SU8686_PANCREAS	0.05	0.93	0.473	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	PAK4--FCGBP	15	1	PAK4	8431	chr19:39664650:+	FCGBP	44011	chr19:40386783:-	ONLY_REF_SPLICE	YES	328	161	0.05	0.09	0.1774	0.0118	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,FCGBP->Fc_fragment_of_IgG_binding_protein,chr19:40353963-40440533:-	SU8686_PANCREAS	0.05	0.09	0.1892	TRUE	0	0	0	1	0	FALSE	ACH-000114
SU8686_PANCREAS	PAK4--FCGBP	15	1	PAK4	8431	chr19:39664650:+	FCGBP	34168	chr19:40402471:-	ONLY_REF_SPLICE	YES	328	13	0.05	0.55	0.1774	0.0118	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,FCGBP->Fc_fragment_of_IgG_binding_protein,chr19:40353963-40440533:-	SU8686_PANCREAS	0.05	0.55	0.1892	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	TEAD4--AMN1	8	28	TEAD4	1711	chr12:3069206:+	AMN1	18863	chr12:31867885:-	ONLY_REF_SPLICE	YES	37	26	0.49	0.58	0.0946	0.3311	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-	SU8686_PANCREAS	0.49	0.58	0.4257	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	FOCAD--CDKN2B-AS1	9	23	FOCAD	11757	chr9:20765072:+	CDKN2B-AS1	79417	chr9:22097257:+	ONLY_REF_SPLICE	YES	0	21	1	0.6	0.1064	0.2719	FOCAD->chr9:20658308-20995954:+,focadhesin,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	SU8686_PANCREAS	0.6	1	0.3783	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TN	7	31	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0828	0.3665	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SU8686_PANCREAS	1	1	0.4493	FALSE	369	2501	205	193	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	13	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1537	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	1	1	0.1537	FALSE	230	198	14	283	0	FALSE	ACH-000114
SU8686_PANCREAS	KIF21A--ASUN	12	3	KIF21A	1464	chr12:39836729:-	ASUN	43519	chr12:27089747:-	ONLY_REF_SPLICE	YES	13	104	0.54	0.13	0.1419	0.0355	KIF21A->chr12:39687030-39837192:-,kinesin_family_member_21A,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	SU8686_PANCREAS	0.13	0.54	0.1774	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	MT-ND6--MT-TE	7	23	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0828	0.2719	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SU8686_PANCREAS	1	1	0.3547	FALSE	499	1288	110	792	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND6--MT-TE	4	35	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0.4138	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SU8686_PANCREAS	1	1	0.4611	FALSE	499	1288	110	792	0	FALSE	ACH-000114
SU8686_PANCREAS	RGP1--ACO1	12	0	RGP1	8656	chr9:35756858:+	ACO1	18981	chr9:32418126:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1419	0	RGP1->RGP1_homolog,_RAB6A_GEF_complex_partner_1,chr9:35749203-35758572:+,ACO1->aconitase_1,chr9:32384618-32454767:+	SU8686_PANCREAS	1	1	0.1419	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	RP6-114E22.1--RGS6	11	4	RP6-114E22.1	1131	chr14:72315453:+	RGS6	7262	chr14:72431489:+	ONLY_REF_SPLICE	YES	8	0	0.65	1	0.1301	0.0473	NEIGHBORS[24009],RP6-114E22.1->chr14:72315323-72375147:+,RGS6->chr14:72399156-73030654:+,regulator_of_G-protein_signaling_6	SU8686_PANCREAS	0.65	1	0.1774	FALSE	0	1	0	2	0	FALSE	ACH-000114
SU8686_PANCREAS	CCDC122--ENOX1	9	9	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	12	0	0.6	1	0.1064	0.1064	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	SU8686_PANCREAS	0.6	1	0.2128	FALSE	39	52	2	34	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-CO3--MT-ATP6	11	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.1301	0.0118	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SU8686_PANCREAS	0.92	1	0.1419	FALSE	189	492	56	216	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TC	7	17	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0828	0.201	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SU8686_PANCREAS	1	1	0.2838	FALSE	462	80	0	856	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	10	2	MT-ND4	1531	chrM:11290:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	32832	13	0	0.48	0.1182	0.0236	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	0.48	0.1418	FALSE	231	217	16	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TC	10	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1182	0.0118	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SU8686_PANCREAS	1	1	0.13	FALSE	462	80	0	856	0	FALSE	ACH-000114
SU8686_PANCREAS	RGP1--ACO1	10	1	RGP1	8992	chr9:35757194:+	ACO1	18981	chr9:32418126:+	INCL_NON_REF_SPLICE	YES	16	25	0.41	0.31	0.1182	0.0118	RGP1->RGP1_homolog,_RAB6A_GEF_complex_partner_1,chr9:35749203-35758572:+,ACO1->aconitase_1,chr9:32384618-32454767:+	SU8686_PANCREAS	0.31	0.41	0.13	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	ACTR3C--RP11-728K20.1	8	8	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	14	0	0.53	1	0.0946	0.0946	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	SU8686_PANCREAS	0.53	1	0.1892	TRUE	0	5	0	16	1	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND6--MT-TE	5	20	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0.2365	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SU8686_PANCREAS	1	1	0.2956	FALSE	499	1288	110	792	0	FALSE	ACH-000114
SU8686_PANCREAS	TEAD4--AMN1	3	28	TEAD4	1711	chr12:3069206:+	AMN1	19183	chr12:31867565:-	ONLY_REF_SPLICE	YES	37	26	0.46	0.54	0.0355	0.3311	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-	SU8686_PANCREAS	0.46	0.54	0.3666	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	EGLN2--C12orf60	2	29	EGLN2	4516	chr19:41309140:+	C12orf60	19705	chr12:15056941:+	ONLY_REF_SPLICE	YES	962	4	0.03	0.89	0.0236	0.3429	EGLN2->chr19:41304901-41314338:+,egl-9_family_hypoxia_inducible_factor_2,C12orf60->chr12:14956506-15059520:+,chromosome_12_open_reading_frame_60	SU8686_PANCREAS	0.03	0.89	0.3665	TRUE	0	0	0	1	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND3--MT-ATP8	9	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1064	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	1	1	0.1064	FALSE	351	233	23	137	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TN	9	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1064	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SU8686_PANCREAS	1	1	0.1064	FALSE	369	2501	205	193	0	FALSE	ACH-000114
SU8686_PANCREAS	RP11-353N4.6--SEC22B	8	4	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	64	353	0.16	0.03	0.0946	0.0473	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SU8686_PANCREAS	0.03	0.16	0.1419	TRUE	49	42	7	43	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	8	3	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	31634	61	0	0.15	0.0946	0.0355	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	0.15	0.1301	FALSE	231	217	16	283	0	FALSE	ACH-000114
SU8686_PANCREAS	CYB5R3--CABIN1	8	2	CYB5R3	10445	chr22:43023310:-	CABIN1	19189	chr22:24431892:+	ONLY_REF_SPLICE	YES	386	10	0.03	0.5	0.0946	0.0236	CYB5R3->chr22:43013846-43045574:-,cytochrome_b5_reductase_3,CABIN1->calcineurin_binding_protein_1,chr22:24407642-24574596:+	SU8686_PANCREAS	0.03	0.5	0.1182	TRUE	0	0	0	1	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND6--MT-TE	3	22	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.2601	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SU8686_PANCREAS	1	1	0.2956	FALSE	499	1288	110	792	0	FALSE	ACH-000114
SU8686_PANCREAS	RP6-114E22.1--RGS6	7	6	RP6-114E22.1	2401	chr14:72375151:+	RGS6	7262	chr14:72431489:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0828	0.0709	NEIGHBORS[24009],RP6-114E22.1->chr14:72315323-72375147:+,RGS6->chr14:72399156-73030654:+,regulator_of_G-protein_signaling_6	SU8686_PANCREAS	1	1	0.1537	FALSE	0	1	0	2	0	FALSE	ACH-000114
SU8686_PANCREAS	TEAD4--AMN1	1	30	TEAD4	2024	chr12:3069519:+	AMN1	20374	chr12:31862359:-	ONLY_REF_SPLICE	NO	36	29	0.46	0.52	0.0118	0.3547	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-	SU8686_PANCREAS	0.46	0.52	0.3665	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	EGLN2--C12orf60	1	29	EGLN2	7955	chr19:41312579:+	C12orf60	19705	chr12:15056941:+	ONLY_REF_SPLICE	YES	736	4	0.04	0.88	0.0118	0.3429	EGLN2->chr19:41304901-41314338:+,egl-9_family_hypoxia_inducible_factor_2,C12orf60->chr12:14956506-15059520:+,chromosome_12_open_reading_frame_60	SU8686_PANCREAS	0.04	0.88	0.3547	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	MT-CO3--MT-ATP6	3	21	MT-CO3	1114	chrM:9320:+	MT-ATP6	5410	chrM:9152:+	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0355	0.2483	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SU8686_PANCREAS	0.92	1	0.2838	FALSE	189	492	56	216	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	8	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	28258	2	0	0.82	0.0946	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	0.82	0.1064	FALSE	231	205	14	283	0	FALSE	ACH-000114
SU8686_PANCREAS	AC104534.3--NUMBL	7	3	AC104534.3	5154	chr19:39321718:-	NUMBL	15652	chr19:41188873:-	ONLY_REF_SPLICE	YES	192	114	0.05	0.08	0.0828	0.0355	AC104534.3->chr19:39308111-39330818:-,NUMBL->NUMB_like,_endocytic_adaptor_protein,chr19:41172596-41196877:-	SU8686_PANCREAS	0.05	0.08	0.1183	TRUE	0	0	0	1	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND1--MT-TL1	5	11	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0591	0.1301	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SU8686_PANCREAS	0.89	1	0.1892	FALSE	210	95	5	49	0	FALSE	ACH-000114
SU8686_PANCREAS	TEAD4--AMN1	1	26	TEAD4	1867	chr12:3069362:+	AMN1	20374	chr12:31862359:-	ONLY_REF_SPLICE	YES	35	29	0.44	0.48	0.0118	0.3074	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-	SU8686_PANCREAS	0.44	0.48	0.3192	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TC	3	16	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.1892	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SU8686_PANCREAS	1	1	0.2247	FALSE	462	80	0	856	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TC	3	16	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.1892	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SU8686_PANCREAS	1	1	0.2247	FALSE	462	80	0	856	0	FALSE	ACH-000114
SU8686_PANCREAS	NR1H2--CYP2A7	7	0	NR1H2	2218	chr19:50841333:+	CYP2A7	21929	chr19:41381779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0828	0	NR1H2->chr19:50832910-50886239:+,nuclear_receptor_subfamily_1_group_H_member_2,CYP2A7->chr19:41381344-41388657:-,cytochrome_P450_family_2_subfamily_A_member_7	SU8686_PANCREAS	1	1	0.0828	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	RP11-96H19.1--RP11-446N19.1	4	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0473	0.1419	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SU8686_PANCREAS	0.94	1	0.1892	FALSE	407	2205	196	549	0	FALSE	ACH-000114
SU8686_PANCREAS	NRIP1--AF127936.7	6	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.39	1	0.0709	0.0355	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SU8686_PANCREAS	0.39	1	0.1064	FALSE	164	806	69	479	0	FALSE	ACH-000114
SU8686_PANCREAS	PPFIBP1--ABCC9	6	3	PPFIBP1	1935	chr12:27677298:+	ABCC9	42417	chr12:22093759:-	ONLY_REF_SPLICE	YES	54	0	0.14	1	0.0709	0.0355	PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,ABCC9->ATP_binding_cassette_subfamily_C_member_9,chr12:21950335-22094336:-	SU8686_PANCREAS	0.14	1	0.1064	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	MT-ND6--MT-TE	3	14	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.1655	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SU8686_PANCREAS	1	1	0.201	FALSE	499	1288	110	792	0	FALSE	ACH-000114
SU8686_PANCREAS	SLC1A5--MT-ND4L	6	2	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	743	0	0.01	1	0.0709	0.0236	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SU8686_PANCREAS	0.01	1	0.0945	FALSE	0	0	0	189	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-CO3--MT-ATP6	3	13	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0355	0.1537	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SU8686_PANCREAS	0.89	1	0.1892	FALSE	189	492	56	216	0	FALSE	ACH-000114
SU8686_PANCREAS	NRIP1--AF127936.7	6	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.5	1	0.0709	0.0118	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SU8686_PANCREAS	0.5	1	0.0827	FALSE	125	705	46	456	0	FALSE	ACH-000114
SU8686_PANCREAS	EGLN2--NAPSB	5	4	EGLN2	3420	chr19:41307320:+	NAPSB	13810	chr19:50840932:-	ONLY_REF_SPLICE	YES	881	0	0.01	1	0.0591	0.0473	EGLN2->chr19:41304901-41314338:+,egl-9_family_hypoxia_inducible_factor_2,NAPSB->chr19:50837053-50848024:-,napsin_B_aspartic_peptidase,_pseudogene	SU8686_PANCREAS	0.01	1	0.1064	TRUE	0	0	0	1	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-CO3--MT-ATP6	5	4	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.0591	0.0473	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SU8686_PANCREAS	0.69	1	0.1064	FALSE	189	492	56	216	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TN	6	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0709	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SU8686_PANCREAS	1	1	0.0709	FALSE	369	2501	205	193	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TN	6	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0709	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SU8686_PANCREAS	1	1	0.0709	FALSE	369	2501	205	193	0	FALSE	ACH-000114
SU8686_PANCREAS	RP11-96H19.1--RP11-446N19.1	3	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0355	0.1419	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SU8686_PANCREAS	0.94	1	0.1774	FALSE	467	2173	244	435	0	FALSE	ACH-000114
SU8686_PANCREAS	ETNK1--RP11-125O5.2	4	7	ETNK1	3386	chr12:22796956:+	RP11-125O5.2	26268	chr12:21279052:+	ONLY_REF_SPLICE	YES	150	0	0.07	1	0.0473	0.0828	ETNK1->chr12:22778009-22843599:+,ethanolamine_kinase_1,RP11-125O5.2->chr12:21200113-21329829:+	SU8686_PANCREAS	0.07	1	0.1301	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	4	7	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	24545	61	0	0.15	0.0473	0.0828	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	0.15	0.1301	FALSE	231	217	16	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	5	3	MT-ND4	1741	chrM:11500:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	28572	2	0	0.8	0.0591	0.0355	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	0.8	0.0946	FALSE	231	217	16	283	0	FALSE	ACH-000114
SU8686_PANCREAS	ZNF473--SPTBN4	2	15	ZNF473	1409	chr19:50529379:+	SPTBN4	20772	chr19:40995982:+	ONLY_REF_SPLICE	YES	56	2	0.23	0.89	0.0236	0.1774	ZNF473->chr19:50528971-50556671:+,zinc_finger_protein_473,SPTBN4->chr19:40972148-41082370:+,spectrin_beta,_non-erythrocytic_4	SU8686_PANCREAS	0.23	0.89	0.201	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	KIF21A--ASUN	5	2	KIF21A	1464	chr12:39836729:-	ASUN	45981	chr12:27081838:-	ONLY_REF_SPLICE	YES	13	56	0.35	0.11	0.0591	0.0236	KIF21A->chr12:39687030-39837192:-,kinesin_family_member_21A,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	SU8686_PANCREAS	0.11	0.35	0.0827	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	MT-CO3--MT-ATP6	4	6	MT-CO3	1006	chrM:9212:+	MT-ATP6	4736	chrM:8478:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0.0709	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SU8686_PANCREAS	1	1	0.1182	FALSE	189	492	56	216	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TC	3	10	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.1182	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SU8686_PANCREAS	1	1	0.1537	FALSE	462	80	0	856	0	FALSE	ACH-000114
SU8686_PANCREAS	RHPN2--CPNE8	1	18	RHPN2	2221	chr19:33535155:-	CPNE8	47479	chr12:39064604:-	ONLY_REF_SPLICE	YES	113	74	0.14	0.2	0.0118	0.2128	{Klijn_CCL:Pancreas=1},RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2,CPNE8->chr12:39040624-39301232:-,copine_8	SU8686_PANCREAS	0.14	0.2	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	MT-ND1--MT-TL1	4	5	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0473	0.0591	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SU8686_PANCREAS	0.9	1	0.1064	FALSE	210	95	5	49	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	5	1	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	29897	0	0	1	0.0591	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	1	0.0709	FALSE	231	217	16	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	3	9	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	3	0	0.8	1	0.0355	0.1064	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0.8	1	0.1419	FALSE	209	205	15	279	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	4	5	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	28267	0	0	1	0.0473	0.0591	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	1	0.1064	FALSE	231	217	16	283	0	FALSE	ACH-000114
SU8686_PANCREAS	RP1-34H18.1--NAV3	5	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	2	1	0.75	0.0591	0.0118	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SU8686_PANCREAS	0.75	1	0.0709	TRUE	254	575	65	124	0	FALSE	ACH-000114
SU8686_PANCREAS	RP11-114H23.1--RP11-114H23.2	3	9	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	5	0	0.71	1	0.0355	0.1064	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SU8686_PANCREAS	0.71	1	0.1419	FALSE	81	155	12	160	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	5	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	1	1	0.0591	FALSE	230	193	14	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	5	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	1	1	0.0591	FALSE	231	204	14	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND5--MT-ND6	3	8	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	5381	1	0	0.0355	0.0946	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SU8686_PANCREAS	0	1	0.1301	FALSE	26	124	4	93	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SU8686_PANCREAS	1	1	0.0591	FALSE	499	1288	110	792	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TN	5	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SU8686_PANCREAS	1	1	0.0591	FALSE	369	2501	205	193	0	FALSE	ACH-000114
SU8686_PANCREAS	TEAD4--AMN1	1	16	TEAD4	2024	chr12:3069519:+	AMN1	22230	chr12:31854941:-	ONLY_REF_SPLICE	YES	36	72	0.32	0.19	0.0118	0.1892	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-	SU8686_PANCREAS	0.19	0.32	0.201	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	3	7	MT-ND4	2050	chrM:11809:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22626	13	0	0.43	0.0355	0.0828	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	0.43	0.1183	FALSE	231	215	16	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	4	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	29069	13	0	0.35	0.0473	0.0355	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	0.35	0.0828	FALSE	231	217	16	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	4	2	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	NO	28966	931	0	0.01	0.0473	0.0236	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	0.01	0.0709	FALSE	231	217	16	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	4	2	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	28618	1495	0	0	0.0473	0.0236	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	0	0.0709	FALSE	231	217	16	283	0	FALSE	ACH-000114
SU8686_PANCREAS	RP6-114E22.1--RGS6	3	6	RP6-114E22.1	2397	chr14:72375147:+	RGS6	7262	chr14:72431489:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0.0709	NEIGHBORS[24009],RP6-114E22.1->chr14:72315323-72375147:+,RGS6->chr14:72399156-73030654:+,regulator_of_G-protein_signaling_6	SU8686_PANCREAS	1	1	0.1064	FALSE	0	1	0	2	0	FALSE	ACH-000114
SU8686_PANCREAS	SLC1A5--MT-ND4L	4	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	730	0	0.01	1	0.0473	0.0236	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SU8686_PANCREAS	0.01	1	0.0709	FALSE	0	0	0	189	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	4	1	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	30746	61	0	0.08	0.0473	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	0.08	0.0591	FALSE	231	217	16	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	3	5	MT-ND4	2288	chrM:12047:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	45	528	0.15	0.01	0.0355	0.0591	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0.01	0.15	0.0946	FALSE	213	207	15	279	0	FALSE	ACH-000114
SU8686_PANCREAS	RP11-141M1.3--STARD13	4	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	9	0.83	0.36	0.0473	0.0118	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SU8686_PANCREAS	0.36	0.83	0.0591	FALSE	141	264	50	91	0	FALSE	ACH-000114
SU8686_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	13	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.93	1	0.0118	0.1537	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SU8686_PANCREAS	0.93	1	0.1655	FALSE	192	492	57	212	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	3	4	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	28807	0	0	1	0.0355	0.0473	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	1	0.0828	FALSE	231	217	16	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	3	4	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	28689	1	0	0.88	0.0355	0.0473	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	0.88	0.0828	FALSE	231	217	16	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SU8686_PANCREAS	1	1	0.0473	FALSE	499	1288	110	792	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SU8686_PANCREAS	1	1	0.0473	FALSE	369	2501	205	193	0	FALSE	ACH-000114
SU8686_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	1	0	0.93	1	0.0118	0.1419	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SU8686_PANCREAS	0.93	1	0.1537	FALSE	275	511	55	178	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	3	3	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	26888	797	0	0.01	0.0355	0.0355	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	0.01	0.071	FALSE	231	217	16	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	30912	0	0	1	0.0355	0.0236	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	1	0.0591	FALSE	231	217	16	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1528	chrM:11287:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	NO	32879	1	0	0.83	0.0355	0.0236	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	0.83	0.0591	FALSE	231	217	16	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1565	chrM:11324:+	MT-ATP8	5527	chrM:8514:+	INCL_NON_REF_SPLICE	YES	31555	1839	0	0	0.0355	0.0236	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	0	0.0591	FALSE	231	217	16	283	0	FALSE	ACH-000114
SU8686_PANCREAS	DNAJC25--UGCG	2	5	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	29	39	0.19	0.15	0.0236	0.0591	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	SU8686_PANCREAS	0.15	0.19	0.0827	TRUE	50	73	10	50	0	FALSE	ACH-000114
SU8686_PANCREAS	ETNK1--RP11-125O5.2	3	1	ETNK1	3386	chr12:22796956:+	RP11-125O5.2	28522	chr12:21294448:+	ONLY_REF_SPLICE	YES	150	0	0.03	1	0.0355	0.0118	ETNK1->chr12:22778009-22843599:+,ethanolamine_kinase_1,RP11-125O5.2->chr12:21200113-21329829:+	SU8686_PANCREAS	0.03	1	0.0473	TRUE	0	0	0	1	0	FALSE	ACH-000114
SU8686_PANCREAS	FSIP1--RP11-624L4.1	3	1	FSIP1	15133	chr15:39893050:-	RP11-624L4.1	27601	chr15:39363809:-	INCL_NON_REF_SPLICE	YES	4	0	0.5	1	0.0355	0.0118	GTEx_FI:{Breast=[count:2=pct:1.8],Brain=[count:1=pct:0.2]},FSIP1->chr15:39892232-40075031:-,fibrous_sheath_interacting_protein_1,RP11-624L4.1->chr15:39157523-39719396:-	SU8686_PANCREAS	0.5	1	0.0473	TRUE	3	181	3	5	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	3	1	MT-ND4	1311	chrM:11070:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	29350	0	0	1	0.0355	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	1	0.0473	FALSE	231	205	14	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	3	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	28258	61	0	0.06	0.0355	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	0	0.06	0.0473	FALSE	231	205	14	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MYH14--CTB-60E11.9	3	1	MYH14	11634	chr19:50735327:+	CTB-60E11.9	52658	chr19:40024974:+	ONLY_REF_SPLICE	YES	352	0	0.01	1	0.0355	0.0118	MYH14->chr19:50691443-50813802:+,myosin,_heavy_chain_14,_non-muscle,CTB-60E11.9->chr19:40023052-40025062:+	SU8686_PANCREAS	0.01	1	0.0473	FALSE	0	0	0	1	0	FALSE	ACH-000114
SU8686_PANCREAS	RP11-141M1.3--STARD13	3	1	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	9	0.57	0.31	0.0355	0.0118	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SU8686_PANCREAS	0.31	0.57	0.0473	FALSE	49	120	16	70	0	FALSE	ACH-000114
SU8686_PANCREAS	RP11-444D3.1--SOX5	3	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0.0118	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SU8686_PANCREAS	1	1	0.0473	TRUE	477	1352	189	275	0	FALSE	ACH-000114
SU8686_PANCREAS	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	16	1	0.2	0.0355	0.0118	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SU8686_PANCREAS	0.2	1	0.0473	TRUE	465	1949	224	605	0	FALSE	ACH-000114
SU8686_PANCREAS	XKR9--RP11-326E22.1	3	1	XKR9	8344	chr8:71619388:+	RP11-326E22.1	21087	chr8:72111375:+	ONLY_REF_SPLICE	YES	33	0	0.11	1	0.0355	0.0118	GTEx_FI:{Brain=[count:4=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Liver=[count:1=pct:0.8]},XKR9->XK_related_9,chr8:71581600-71702606:+,RP11-326E22.1->chr8:72067692-72116458:+	SU8686_PANCREAS	0.11	1	0.0473	TRUE	5	29	0	13	0	FALSE	ACH-000114
SU8686_PANCREAS	FTH1--CSTB	3	0	FTH1	1226	chr11:61734907:-	CSTB	8340	chr21:45196162:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Esophagus=[count:2=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Esophagus_-_Mucosa=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,CSTB->Oncogene{Bushman},chr21:45192393-45196326:-,cystatin_B	SU8686_PANCREAS	1	1	0.0355	TRUE	1	0	0	2	0	TRUE	ACH-000114
SU8686_PANCREAS	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SU8686_PANCREAS	1	1	0.0355	FALSE	189	492	56	216	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SU8686_PANCREAS	1	1	0.0355	FALSE	189	492	56	216	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND3--MT-ATP8	3	0	MT-ND3	1060	chrM:10118:+	MT-ATP8	4489	chrM:8508:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	1	1	0.0355	FALSE	351	233	23	137	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	3	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	1	1	0.0355	FALSE	230	198	14	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	3	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	1	1	0.0355	FALSE	230	193	14	283	0	FALSE	ACH-000114
SU8686_PANCREAS	MT-ND4--MT-ATP8	3	0	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SU8686_PANCREAS	1	1	0.0355	FALSE	230	197	14	283	0	FALSE	ACH-000114
SU8686_PANCREAS	TXN--UBB	3	0	TXN	4211	chr9:113007058:-	UBB	9283	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0	TXN->Oncogene{Bushman},chr9:113006091-113018920:-,thioredoxin,UBB->chr17:16284112-16286059:+,ubiquitin_B	SU8686_PANCREAS	1	1	0.0355	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	ETNK1--RP11-125O5.2	1	7	ETNK1	3386	chr12:22796956:+	RP11-125O5.2	26258	chr12:21279042:+	ONLY_REF_SPLICE	YES	150	0	0.05	1	0.0118	0.0828	ETNK1->chr12:22778009-22843599:+,ethanolamine_kinase_1,RP11-125O5.2->chr12:21200113-21329829:+	SU8686_PANCREAS	0.05	1	0.0946	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	ZNF461--CLIP3	2	3	ZNF461	5143	chr19:37147350:-	CLIP3	21650	chr19:36508893:-	ONLY_REF_SPLICE	YES	26	21	0.16	0.19	0.0236	0.0355	ZNF461->chr19:37128094-37157755:-,zinc_finger_protein_461,CLIP3->CAP-Gly_domain_containing_linker_protein_3,chr19:36505562-36524245:-	SU8686_PANCREAS	0.16	0.19	0.0591	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	ACTR3C--RP11-728K20.1	2	2	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	19906	chr7:149588390:-	ONLY_REF_SPLICE	YES	14	0	0.22	1	0.0236	0.0236	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	SU8686_PANCREAS	0.22	1	0.0472	TRUE	3	46	4	12	0	FALSE	ACH-000114
SU8686_PANCREAS	NR1H2--CYP2A7	2	2	NR1H2	2218	chr19:50841333:+	CYP2A7	16199	chr19:41387656:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0.0236	NR1H2->chr19:50832910-50886239:+,nuclear_receptor_subfamily_1_group_H_member_2,CYP2A7->chr19:41381344-41388657:-,cytochrome_P450_family_2_subfamily_A_member_7	SU8686_PANCREAS	1	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	PPFIBP1--ABCC9	2	2	PPFIBP1	1935	chr12:27677298:+	ABCC9	44593	chr12:22089628:-	ONLY_REF_SPLICE	NO	54	0	0.07	1	0.0236	0.0236	PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,ABCC9->ATP_binding_cassette_subfamily_C_member_9,chr12:21950335-22094336:-	SU8686_PANCREAS	0.07	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	RP11-123O10.4--GRIP1	2	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0.0236	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SU8686_PANCREAS	1	1	0.0472	FALSE	93	270	15	244	0	FALSE	ACH-000114
SU8686_PANCREAS	RP6-114E22.1--RGS6	2	2	RP6-114E22.1	2397	chr14:72375147:+	RGS6	8366	chr14:72818803:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0236	0.0236	NEIGHBORS[24009],RP6-114E22.1->chr14:72315323-72375147:+,RGS6->chr14:72399156-73030654:+,regulator_of_G-protein_signaling_6	SU8686_PANCREAS	0.8	1	0.0472	FALSE	0	3	0	2	0	FALSE	ACH-000114
SU8686_PANCREAS	AC024084.1--AC009784.3	2	1	AC024084.1	3174	chr7:135743253:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0236	0.0118	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	SU8686_PANCREAS	0.75	1	0.0354	FALSE	2	5	0	14	0	FALSE	ACH-000114
SU8686_PANCREAS	FGF14-IT1--FGF14	2	1	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0.0118	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	SU8686_PANCREAS	1	1	0.0354	TRUE	71	201	23	28	0	FALSE	ACH-000114
SU8686_PANCREAS	MYH14--CTB-60E11.9	2	1	MYH14	11634	chr19:50735327:+	CTB-60E11.9	51537	chr19:40023756:+	ONLY_REF_SPLICE	YES	352	0	0.01	1	0.0236	0.0118	MYH14->chr19:50691443-50813802:+,myosin,_heavy_chain_14,_non-muscle,CTB-60E11.9->chr19:40023052-40025062:+	SU8686_PANCREAS	0.01	1	0.0354	FALSE	0	0	0	1	0	FALSE	ACH-000114
SU8686_PANCREAS	ZNF473--SPTBN4	1	5	ZNF473	1409	chr19:50529379:+	SPTBN4	21946	chr19:40998870:+	ONLY_REF_SPLICE	NO	56	10	0.1	0.38	0.0118	0.0591	ZNF473->chr19:50528971-50556671:+,zinc_finger_protein_473,SPTBN4->chr19:40972148-41082370:+,spectrin_beta,_non-erythrocytic_4	SU8686_PANCREAS	0.1	0.38	0.0709	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	AC104534.3--NUMBL	1	4	AC104534.3	5154	chr19:39321718:-	NUMBL	15578	chr19:41188947:-	ONLY_REF_SPLICE	YES	192	117	0.03	0.04	0.0118	0.0473	AC104534.3->chr19:39308111-39330818:-,NUMBL->NUMB_like,_endocytic_adaptor_protein,chr19:41172596-41196877:-	SU8686_PANCREAS	0.03	0.04	0.0591	TRUE	0	0	0	1	0	FALSE	ACH-000114
SU8686_PANCREAS	AP2M1--TMEM181	2	0	AP2M1	6526	chr3:183898669:+	TMEM181	14167	chr6:158994452:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	AP2M1->adaptor_related_protein_complex_2_mu_1_subunit,chr3:183892477-183901879:+,TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181	SU8686_PANCREAS	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	DBNL--NPC1L1	2	0	DBNL	1181	chr7:44084419:+	NPC1L1	22986	chr7:44579941:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	DBNL->chr7:44084239-44109055:+,drebrin_like,NPC1L1->NPC1_like_intracellular_cholesterol_transporter_1,chr7:44552134-44580914:-	SU8686_PANCREAS	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	HSPE1--IFRD1	2	0	HSPE1	2245	chr2:198365962:+	IFRD1	18959	chr7:112101921:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	HSPE1->chr2:198364718-198368181:+,heat_shock_protein_family_E_(Hsp10)_member_1,IFRD1->chr7:112063023-112121072:+,interferon_related_developmental_regulator_1	SU8686_PANCREAS	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	RP11-353N4.6--SEC22B	1	4	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	NO	68	353	0.07	0.01	0.0118	0.0473	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SU8686_PANCREAS	0.01	0.07	0.0591	FALSE	49	42	7	43	0	FALSE	ACH-000114
SU8686_PANCREAS	ZNF461--CLIP3	1	3	ZNF461	1164	chr19:37157592:-	CLIP3	20335	chr19:36510208:-	ONLY_REF_SPLICE	YES	49	14	0.08	0.22	0.0118	0.0355	ZNF461->chr19:37128094-37157755:-,zinc_finger_protein_461,CLIP3->CAP-Gly_domain_containing_linker_protein_3,chr19:36505562-36524245:-	SU8686_PANCREAS	0.08	0.22	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	TEAD4--AMN1	1	2	TEAD4	1152	chr12:3068647:+	AMN1	18863	chr12:31867885:-	ONLY_REF_SPLICE	YES	15	26	0.17	0.1	0.0118	0.0236	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-	SU8686_PANCREAS	0.1	0.17	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	AC024084.1--AC009784.3	1	1	AC024084.1	2134	chr7:135715781:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	NO	0	5	1	0.29	0.0118	0.0118	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	SU8686_PANCREAS	0.29	1	0.0236	FALSE	0	3	0	12	0	FALSE	ACH-000114
SU8686_PANCREAS	AC024084.1--AC009784.3	1	1	AC024084.1	2134	chr7:135715781:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0118	0.0118	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	SU8686_PANCREAS	0.67	1	0.0236	FALSE	1	6	0	14	0	FALSE	ACH-000114
SU8686_PANCREAS	AC024084.1--AC009784.3	1	1	AC024084.1	3174	chr7:135743253:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	YES	0	5	1	0.29	0.0118	0.0118	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	SU8686_PANCREAS	0.29	1	0.0236	FALSE	0	2	0	6	0	FALSE	ACH-000114
SU8686_PANCREAS	FSIP1--RP11-624L4.1	1	1	FSIP1	15137	chr15:39893046:-	RP11-624L4.1	27601	chr15:39363809:-	ONLY_REF_SPLICE	NO	4	0	0.33	1	0.0118	0.0118	GTEx_FI:{Breast=[count:2=pct:1.8],Brain=[count:1=pct:0.2]},FSIP1->chr15:39892232-40075031:-,fibrous_sheath_interacting_protein_1,RP11-624L4.1->chr15:39157523-39719396:-	SU8686_PANCREAS	0.33	1	0.0236	TRUE	3	181	3	5	0	FALSE	ACH-000114
SU8686_PANCREAS	KCNC3--LTBP4	1	1	KCNC3	6512	chr19:50823850:-	LTBP4	27927	chr19:41116438:+	ONLY_REF_SPLICE	YES	107	1141	0.02	0	0.0118	0.0118	KCNC3->chr19:50815194-50836772:-,potassium_voltage-gated_channel_subfamily_C_member_3,LTBP4->chr19:41098789-41135725:+,latent_transforming_growth_factor_beta_binding_protein_4	SU8686_PANCREAS	0	0.02	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000114
SU8686_PANCREAS	NR1H2--CYP2A7	1	1	NR1H2	2218	chr19:50841333:+	CYP2A7	19810	chr19:41383898:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0118	0.0118	NR1H2->chr19:50832910-50886239:+,nuclear_receptor_subfamily_1_group_H_member_2,CYP2A7->chr19:41381344-41388657:-,cytochrome_P450_family_2_subfamily_A_member_7	SU8686_PANCREAS	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000114
SU8686_PANCREAS	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	8	1	0.2	0.0118	0.0118	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SU8686_PANCREAS	0.2	1	0.0236	TRUE	458	1351	185	561	0	FALSE	ACH-000114
SU8686_PANCREAS	TXNRD1--CHST11	1	1	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	NO	1445	15	0	0.12	0.0118	0.0118	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	SU8686_PANCREAS	0	0.12	0.0236	FALSE	0	2	1	13	2	FALSE	ACH-000114
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--IGH@	3684	0	MIR142	1039	chr17:56409831:-	IGH@	113632	chr14:106209407:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	40.1886	0	MIR142->chr17:56408245-56409869:-,microRNA_142,IGH@->Oncogene{Bushman}	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	40.1886	TRUE	0	1	0	3	1	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS15--DAZAP1	612	69	RPS15	1534	chr19:1438891:+	DAZAP1	13820	chr19:1422347:+	ONLY_REF_SPLICE	YES	123	295	0.85	0.7	6.6763	0.7527	LOCAL_REARRANGEMENT:+:[2639],RPS15->chr19:1438358-1440583:+,ribosomal_protein_S15,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.85	7.429	TRUE	0	0	0	2	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4I1--CTC-326K19.6	472	171	IL4I1	2336	chr19:50430951:-	CTC-326K19.6	16400	chr19:50413141:-	ONLY_REF_SPLICE	YES	0	0	1	1	5.149	1.8654	NEIGHBORS_OVERLAP:-:-:[20038],IL4I1->chr19:50392911-50432796:-,interleukin_4_induced_1,CTC-326K19.6->chr19:50412758-50461648:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	7.0144	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EFNA4--RUSC1	233	71	EFNA4	2917	chr1:155039916:+	RUSC1	11568	chr1:155294636:+	ONLY_REF_SPLICE	YES	33	8	0.9	0.97	2.5418	0.7745	{Klijn_CCL:Lymphoid=1},EFNA4->chr1:155036207-155042029:+,ephrin_A4,RUSC1->RUN_and_SH3_domain_containing_1,chr1:155290687-155300905:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.97	3.3163	TRUE	0	0	0	2	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	174	109	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	19	0	0.94	1	1.8982	1.1891	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	3.0873	TRUE	0	48	0	65	48	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4I1--CTC-326K19.6	181	80	IL4I1	1214	chr19:50432583:-	CTC-326K19.6	16400	chr19:50413141:-	ONLY_REF_SPLICE	YES	34	0	0.88	1	1.9745	0.8727	NEIGHBORS_OVERLAP:-:-:[20038],IL4I1->chr19:50392911-50432796:-,interleukin_4_induced_1,CTC-326K19.6->chr19:50412758-50461648:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	2.8472	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFYVE28--POLN	125	30	ZFYVE28	5035	chr4:2355660:-	POLN	51223	chr4:2097660:-	ONLY_REF_SPLICE	YES	16	2	0.91	0.99	1.3636	0.3273	NEIGHBORS[27461],ZFYVE28->chr4:2271309-2420390:-,zinc_finger_FYVE-type_containing_28,POLN->chr4:2073645-2243848:-,polymerase_(DNA)_nu	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.99	1.6909	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	117	15	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	4	0	0.97	1	1.2763	0.1636	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	1.4399	TRUE	0	3	0	38	3	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	100	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0909	0.2836	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.3745	TRUE	508	994	45	981	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4I1--CTC-326K19.6	45	181	IL4I1	8388	chr19:50397525:-	CTC-326K19.6	16400	chr19:50413141:-	ONLY_REF_SPLICE	YES	34	0	0.87	1	0.4909	1.9745	NEIGHBORS_OVERLAP:-:-:[20038],IL4I1->chr19:50392911-50432796:-,interleukin_4_induced_1,CTC-326K19.6->chr19:50412758-50461648:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	2.4654	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KDM4B--UHRF1	90	0	KDM4B	1117	chr19:4969241:+	UHRF1	52451	chr19:4960668:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.9818	0	YOSHIHARA_TCGA_num_samples[BRCA:2],LOCAL_REARRANGEMENT:+:[6960],KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9818	TRUE	0	1	0	1	1	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	METTL16--SMG6	80	12	METTL16	1133	chr17:2415053:-	SMG6	33391	chr17:2187029:-	ONLY_REF_SPLICE	YES	5	10	0.95	0.9	0.8727	0.1309	GTEx&tcga_normals:1/3694=0.03%,METTL16->chr17:2308856-2415185:-,methyltransferase_like_16,SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.95	1.0036	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	73	7	MT-ND4	1947	chrM:11706:+	MT-RNR2	5392	chrM:1684:+	INCL_NON_REF_SPLICE	NO	16223	0	0	1	0.7964	0.0764	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.8728	FALSE	13	19	3	21	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-344E13.3--UBBP4	47	70	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	0.5127	0.7636	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.2763	TRUE	23	13	0	54	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	64	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6982	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6982	FALSE	369	2501	205	193	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	57	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	134	6	0.3	0.91	0.6218	0.0109	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.91	0.6327	TRUE	519	3926	326	965	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	20	114	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	19	0	0.88	1	0.2182	1.2436	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	1.4618	TRUE	0	35	0	55	35	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	46	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5018	0.0327	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5345	FALSE	462	80	0	856	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	37	32	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	97	13	0.42	0.84	0.4036	0.3491	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.84	0.7527	TRUE	267	562	48	632	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP128--DIO2	39	15	CEP128	34944	chr14:80971255:-	DIO2	47013	chr14:80744862:-	ONLY_REF_SPLICE	YES	124	0	0.3	1	0.4254	0.1636	NEIGHBORS[89230],CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,DIO2->Oncogene{Bushman},chr14:80663873-80854100:-,deiodinase,_iodothyronine,_type_II	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.589	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	33	33	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	4	0	0.94	1	0.36	0.36	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.72	TRUE	0	5	0	45	5	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-CO1	37	1	MT-ND4	1359	chrM:11118:+	MT-CO1	6032	chrM:6557:+	INCL_NON_REF_SPLICE	YES	17739	23232	0	0	0.4036	0.0109	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.4145	FALSE	19	92	11	16	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLSCR1--BFSP2-AS1	33	8	PLSCR1	1398	chr3:146262254:-	BFSP2-AS1	18198	chr3:133174307:-	ONLY_REF_SPLICE	YES	56	0	0.42	1	0.36	0.0873	PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1,BFSP2-AS1->BFSP2_antisense_RNA_1,chr3:133148113-133174620:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.4473	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OTUD5--MT-ND4L	32	10	OTUD5	9682	chrX:48780079:-	MT-ND4L	13458	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1322	0	0.03	1	0.3491	0.1091	OTUD5->OTU_deubiquitinase_5,chrX:48779305-48815648:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.4582	FALSE	0	0	0	6	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XPO6--NPIPB6	30	7	XPO6	1555	chr16:28222687:-	NPIPB6	42648	chr16:28356074:-	ONLY_REF_SPLICE	YES	79	8	0.32	0.82	0.3273	0.0764	XPO6->chr16:28109300-28223241:-,exportin_6,NPIPB6->chr16:28353876-28374829:-,nuclear_pore_complex_interacting_protein_family_member_B6	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.82	0.4037	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCAF7--TANC2	27	6	DCAF7	1355	chr17:61628176:+	TANC2	39146	chr17:61457079:+	ONLY_REF_SPLICE	YES	216	3	0.13	0.92	0.2945	0.0655	DCAF7->DDB1_and_CUL4_associated_factor_7,chr17:61627822-61671639:+,TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.92	0.36	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NEMF--RP11-305L7.3	27	4	NEMF	21774	chr14:50269171:-	RP11-305L7.3	37791	chr9:93881842:-	ONLY_REF_SPLICE	YES	67	0	0.32	1	0.2945	0.0436	NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,RP11-305L7.3->chr9:93881420-93925369:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.3381	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUMF1--AC018816.3	26	8	SUMF1	7757	chr3:4452549:-	AC018816.3	32665	chr3:4898429:-	INCL_NON_REF_SPLICE	YES	34	0	0.5	1	0.2836	0.0873	SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,AC018816.3->chr3:4855978-4928977:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.3709	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	21	25	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	90	17	0.34	0.73	0.2291	0.2727	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.73	0.5018	TRUE	267	562	48	632	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4I1--CTC-326K19.6	20	26	IL4I1	1190	chr19:50432607:-	CTC-326K19.6	16400	chr19:50413141:-	INCL_NON_REF_SPLICE	YES	125	0	0.27	1	0.2182	0.2836	NEIGHBORS_OVERLAP:-:-:[20038],IL4I1->chr19:50392911-50432796:-,interleukin_4_induced_1,CTC-326K19.6->chr19:50412758-50461648:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.5018	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	12	58	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1309	0.6327	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7636	FALSE	369	2501	205	193	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC016629.3--LINC01054	23	12	AC016629.3	2367	chr19:59109073:-	LINC01054	8235	chr13:115096253:-	ONLY_REF_SPLICE	YES	2	10	0.95	0.78	0.2509	0.1309	AC016629.3->chr19:59105263-59110722:-,LINC01054->chr13:115095034-115099423:-,long_intergenic_non-protein_coding_RNA_1054	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.95	0.3818	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	25	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	11	0	0.72	1	0.2727	0.0436	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	1	0.3163	FALSE	33	240	4	98	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	19	13	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2073	0.1418	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3491	TRUE	0	2	0	37	2	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	21	2	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	15889	1507	0	0.02	0.2291	0.0218	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.2509	FALSE	231	217	16	283	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4I1--CTC-326K19.6	21	1	IL4I1	1123	chr19:50432674:-	CTC-326K19.6	16400	chr19:50413141:-	ONLY_REF_SPLICE	YES	22	0	0.5	1	0.2291	0.0109	NEIGHBORS_OVERLAP:-:-:[20038],IL4I1->chr19:50392911-50432796:-,interleukin_4_induced_1,CTC-326K19.6->chr19:50412758-50461648:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.24	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	9	47	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0982	0.5127	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6109	FALSE	369	2501	205	193	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	12	34	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1309	0.3709	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5018	FALSE	369	2501	205	193	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	20	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2182	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2182	FALSE	499	1288	110	792	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	20	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2182	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2182	FALSE	369	2501	205	193	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	18	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.1964	0.0545	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.2509	FALSE	499	1288	110	792	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ2A--PRIM1	15	12	BAZ2A	3376	chr12:57023909:-	PRIM1	27855	chr12:57144979:-	ONLY_REF_SPLICE	YES	102	49	0.21	0.36	0.1636	0.1309	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[94780],BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,PRIM1->chr12:57125380-57146157:-,primase_(DNA)_subunit_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.36	0.2945	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	17	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1855	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1855	FALSE	369	2501	205	193	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL672183.2--CDC16	14	9	AL672183.2	1369	chr1:249231148:+	CDC16	22080	chr13:115037659:+	INCL_NON_REF_SPLICE	YES	0	135	1	0.15	0.1527	0.0982	AL672183.2->chr1:249230780-249231242:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.2509	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ2A--PRIM1	14	6	BAZ2A	2725	chr12:57024560:-	PRIM1	27855	chr12:57144979:-	ONLY_REF_SPLICE	YES	50	49	0.29	0.29	0.1527	0.0655	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[94780],BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,PRIM1->chr12:57125380-57146157:-,primase_(DNA)_subunit_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.29	0.2182	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	11	18	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.12	0.1964	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3164	FALSE	369	2501	205	193	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--IGH@	15	0	MIR142	1039	chr17:56409831:-	IGH@	113831	chr14:106209208:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1636	0	MIR142->chr17:56408245-56409869:-,microRNA_142,IGH@->Oncogene{Bushman}	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1636	TRUE	0	1	0	3	1	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	35	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0655	0.3818	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4473	FALSE	369	2501	205	193	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	14	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1527	0.0218	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1745	FALSE	416	2512	207	587	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAWR--RP11-390N6.1	11	12	PAWR	9188	chr12:80007355:-	RP11-390N6.1	29911	chr12:79370449:-	ONLY_REF_SPLICE	YES	24	1	0.49	0.96	0.12	0.1309	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP11-390N6.1->chr12:79354038-79439424:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.96	0.2509	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PXK--FLNB	12	5	PXK	1211	chr3:58318817:+	FLNB	58462	chr3:58128377:+	ONLY_REF_SPLICE	YES	76	0	0.18	1	0.1309	0.0545	PXK->PX_domain_containing_serine/threonine_kinase_like,chr3:58318607-58411748:+,FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.1854	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIK3C3--LINC00907	11	8	PIK3C3	9095	chr18:39570518:+	LINC00907	52895	chr18:39915049:+	ONLY_REF_SPLICE	YES	47	3	0.29	0.86	0.12	0.0873	NEIGHBORS[71453],PIK3C3->chr18:39535171-39667794:+,phosphatidylinositol_3-kinase_catalytic_subunit_type_3,LINC00907->chr18:39739247-40271387:+,long_intergenic_non-protein_coding_RNA_907	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.86	0.2073	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	12	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1309	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1309	FALSE	230	193	14	283	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.12	0.0436	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1636	FALSE	499	1288	110	792	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	32	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0.3491	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3927	FALSE	369	2501	205	193	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLSCR1--BFSP2-AS1	11	4	PLSCR1	1398	chr3:146262254:-	BFSP2-AS1	19333	chr3:133167739:-	ONLY_REF_SPLICE	YES	56	0	0.21	1	0.12	0.0436	PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1,BFSP2-AS1->BFSP2_antisense_RNA_1,chr3:133148113-133174620:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.1636	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	11	2	MT-ND4	1303	chrM:11062:+	MT-RNR2	5933	chrM:2225:+	INCL_NON_REF_SPLICE	YES	16561	9296	0	0	0.12	0.0218	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1418	FALSE	13	19	3	21	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	11	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.12	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.12	FALSE	13	9	0	364	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ2A--PRIM1	9	6	BAZ2A	1635	chr12:57029966:-	PRIM1	27855	chr12:57144979:-	ONLY_REF_SPLICE	YES	51	49	0.23	0.23	0.0982	0.0655	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[94780],BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,PRIM1->chr12:57125380-57146157:-,primase_(DNA)_subunit_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.23	0.1637	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-114H21.2--CTB-1I21.1	5	21	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	17	0	0.6	1	0.0545	0.2291	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.2836	TRUE	0	2	0	12	2	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1091	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1091	FALSE	499	1288	110	792	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XPO6--NPIPB6	8	7	XPO6	2691	chr16:28220308:-	NPIPB6	42648	chr16:28356074:-	ONLY_REF_SPLICE	YES	120	8	0.11	0.65	0.0873	0.0764	XPO6->chr16:28109300-28223241:-,exportin_6,NPIPB6->chr16:28353876-28374829:-,nuclear_pore_complex_interacting_protein_family_member_B6	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.65	0.1637	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-CO1	6	14	MT-ND4	2122	chrM:11881:+	MT-CO1	5909	chrM:6434:+	INCL_NON_REF_SPLICE	NO	10494	21358	0	0	0.0655	0.1527	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.2182	FALSE	19	92	11	16	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-CO1	7	10	MT-ND4	2344	chrM:12103:+	MT-CO1	6060	chrM:6585:+	INCL_NON_REF_SPLICE	NO	0	23239	1	0	0.0764	0.1091	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1855	FALSE	19	91	11	16	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	22	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0.24	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2836	FALSE	369	2501	205	193	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-CO1	7	9	MT-ND4	1773	chrM:11532:+	MT-CO1	5916	chrM:6441:+	INCL_NON_REF_SPLICE	YES	15803	21523	0	0	0.0764	0.0982	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1746	FALSE	19	92	11	16	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	8	4	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	4	1	0.75	0.92	0.0873	0.0436	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.92	0.1309	TRUE	0	1	0	26	1	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	9	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0982	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0982	TRUE	0	0	0	100	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0982	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0982	FALSE	13	9	0	364	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	9	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0982	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0982	FALSE	230	198	14	283	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-662B19.2--WDR37	9	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0982	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0982	TRUE	31	42	1	25	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	8	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0873	0.0327	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.12	FALSE	462	80	0	856	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDF4--MT-ND4L	7	6	SDF4	2246	chr1:1164221:-	MT-ND4L	13838	chrM:10471:+	INCL_NON_REF_SPLICE	YES	701	0	0.02	1	0.0764	0.0655	SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.1419	FALSE	0	0	0	7	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	8	1	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	9	0	0.5	1	0.0873	0.0109	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0982	TRUE	0	16	0	53	13	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SENP7--RPL24	7	5	SENP7	3297	chr3:101212717:-	RPL24	32195	chr3:101405401:-	ONLY_REF_SPLICE	YES	16	28	0.43	0.3	0.0764	0.0545	SENP7->SUMO1/sentrin_specific_peptidase_7,chr3:101043049-101232085:-,RPL24->chr3:101399935-101405626:-,ribosomal_protein_L24	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.43	0.1309	TRUE	0	0	0	2	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP128--DIO2	6	7	CEP128	34944	chr14:80971255:-	DIO2	51679	chr14:80677868:-	ONLY_REF_SPLICE	YES	124	42	0.09	0.24	0.0655	0.0764	NEIGHBORS[89230],CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,DIO2->Oncogene{Bushman},chr14:80663873-80854100:-,deiodinase,_iodothyronine,_type_II	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.24	0.1419	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	6	6	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	11	0	0.52	1	0.0655	0.0655	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	1	0.131	FALSE	20	187	4	79	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDF4--MT-ND4L	6	6	SDF4	2252	chr1:1164215:-	MT-ND4L	13838	chrM:10471:+	INCL_NON_REF_SPLICE	YES	695	0	0.02	1	0.0655	0.0655	SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.131	FALSE	0	0	0	7	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFYVE28--POLN	7	2	ZFYVE28	1379	chr4:2420012:-	POLN	51223	chr4:2097660:-	ONLY_REF_SPLICE	YES	1	2	0.9	0.82	0.0764	0.0218	NEIGHBORS[27461],ZFYVE28->chr4:2271309-2420390:-,zinc_finger_FYVE-type_containing_28,POLN->chr4:2073645-2243848:-,polymerase_(DNA)_nu	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.9	0.0982	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP128--DIO2	3	17	CEP128	34944	chr14:80971255:-	DIO2	45902	chr14:80779922:-	ONLY_REF_SPLICE	YES	124	0	0.14	1	0.0327	0.1855	NEIGHBORS[89230],CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,DIO2->Oncogene{Bushman},chr14:80663873-80854100:-,deiodinase,_iodothyronine,_type_II	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.2182	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUMF1--AC018816.3	7	1	SUMF1	7757	chr3:4452549:-	AC018816.3	34147	chr3:4872702:-	ONLY_REF_SPLICE	YES	34	4	0.19	0.67	0.0764	0.0109	SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,AC018816.3->chr3:4855978-4928977:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.67	0.0873	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR4--KCNJ6	6	4	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	10	0	0.5	1	0.0655	0.0436	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.1091	FALSE	0	24	0	27	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-CO1	3	15	MT-ND4	1910	chrM:11669:+	MT-CO1	5892	chrM:6417:+	INCL_NON_REF_SPLICE	YES	15730	20783	0	0	0.0327	0.1636	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1963	FALSE	19	92	11	16	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM50B--DONSON	6	3	TMEM50B	12231	chr21:34821089:-	DONSON	34319	chr21:34932013:-	ONLY_REF_SPLICE	YES	39	15	0.19	0.38	0.0655	0.0327	LOCAL_REARRANGEMENT:-:[79530],TMEM50B->chr21:34804792-34852318:-,transmembrane_protein_50B,DONSON->chr21:34931848-34961014:-,downstream_neighbor_of_SON	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.38	0.0982	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	6	2	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	4	15	0.67	0.35	0.0655	0.0218	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.67	0.0873	TRUE	0	1	0	21	1	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--IGH@	6	2	MIR142	1214	chr17:56409656:-	IGH@	113632	chr14:106209407:-	INCL_NON_REF_SPLICE	YES	312	139	0.03	0.05	0.0655	0.0218	MIR142->chr17:56408245-56409869:-,microRNA_142,IGH@->Oncogene{Bushman}	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.05	0.0873	TRUE	0	1	0	3	1	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	2	17	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	5	0	0.79	1	0.0218	0.1855	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	0.2073	TRUE	0	0	0	21	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	5	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0545	0.0545	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.109	FALSE	499	1288	110	792	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-114H21.2--CTB-1I21.1	1	21	RP11-114H21.2	2303	chr5:135840382:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	18	0	0.55	1	0.0109	0.2291	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.24	TRUE	0	0	0	4	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0655	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0655	FALSE	183	104	9	328	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0655	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0655	FALSE	462	80	0	856	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-498C9.2--GAPDH	6	0	RP11-498C9.2	1445	chr17:79801485:+	GAPDH	8196	chr12:6646518:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0655	0	RP11-498C9.2->chr17:79801041-79801834:+,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0655	TRUE	0	0	0	2	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRDMT1--ST8SIA6	6	0	TRDMT1	1484	chr10:17243570:-	ST8SIA6	29007	chr10:17432619:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0655	0	TRDMT1->chr10:17184253-17244053:-,tRNA_aspartic_acid_methyltransferase_1,ST8SIA6->ST8_alpha-N-acetyl-neuraminide_alpha-2,8-sialyltransferase_6,chr10:17360382-17496329:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0655	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	7	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4700	26	0	0.3	0.0436	0.0764	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.3	0.12	FALSE	218	210	16	281	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15807	1	0	0.89	0.0545	0.0327	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.89	0.0872	FALSE	231	217	16	283	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	4	7	MT-ND4	1923	chrM:11682:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	15762	0	0	1	0.0436	0.0764	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.12	FALSE	13	19	3	21	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATF2--CHN1	4	6	ATF2	17534	chr2:175945388:-	CHN1	26246	chr2:175816930:-	ONLY_REF_SPLICE	YES	42	3	0.19	0.77	0.0436	0.0655	NEIGHBORS[66881],ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-,CHN1->Oncogene{Bushman},chimerin_1,chr2:175664091-175870097:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.77	0.1091	FALSE	0	0	0	7	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIK3C3--LINC00907	3	10	PIK3C3	9095	chr18:39570518:+	LINC00907	51242	chr18:39869452:+	INCL_NON_REF_SPLICE	YES	47	1	0.22	0.93	0.0327	0.1091	NEIGHBORS[71453],PIK3C3->chr18:39535171-39667794:+,phosphatidylinositol_3-kinase_catalytic_subunit_type_3,LINC00907->chr18:39739247-40271387:+,long_intergenic_non-protein_coding_RNA_907	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.93	0.1418	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIK3C3--LINC00907	3	10	PIK3C3	9095	chr18:39570518:+	LINC00907	51259	chr18:39869469:+	ONLY_REF_SPLICE	YES	47	1	0.22	0.93	0.0327	0.1091	NEIGHBORS[71453],PIK3C3->chr18:39535171-39667794:+,phosphatidylinositol_3-kinase_catalytic_subunit_type_3,LINC00907->chr18:39739247-40271387:+,long_intergenic_non-protein_coding_RNA_907	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.93	0.1418	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CANX--HLA-C	5	1	CANX	14586	chr5:179147493:+	HLA-C	25867	chr6:31239090:-	INCL_NON_REF_SPLICE	YES	1138	9864	0.01	0	0.0545	0.0109	CANX->calnexin,chr5:179105629-179157926:+,HLA-C->chr6:31236526-31239907:-,major_histocompatibility_complex,_class_I,_C	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0654	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-CO1	3	9	MT-ND4	2338	chrM:12097:+	MT-CO1	6072	chrM:6597:+	INCL_NON_REF_SPLICE	YES	0	22603	1	0	0.0327	0.0982	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1309	FALSE	19	91	11	16	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	5	1	MT-ND4	1209	chrM:10968:+	MT-RNR2	5415	chrM:1707:+	INCL_NON_REF_SPLICE	NO	12517	0	0	1	0.0545	0.0109	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0654	FALSE	13	19	3	21	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	4	5	MT-ND4	1510	chrM:11269:+	MT-RNR2	5386	chrM:1678:+	INCL_NON_REF_SPLICE	YES	17457	0	0	1	0.0436	0.0545	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0981	FALSE	13	19	3	21	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	2	12	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	4	1	0.78	0.93	0.0218	0.1309	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.93	0.1527	TRUE	0	1	0	20	1	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP128--DIO2	4	4	CEP128	34944	chr14:80971255:-	DIO2	54691	chr14:80669631:-	ONLY_REF_SPLICE	YES	124	66	0.06	0.11	0.0436	0.0436	NEIGHBORS[89230],CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,DIO2->Oncogene{Bushman},chr14:80663873-80854100:-,deiodinase,_iodothyronine,_type_II	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.11	0.0872	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP97--FAM172BP	5	0	CEP97	1795	chr3:101443563:+	FAM172BP	24005	chr3:101240726:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0545	0	CEP97->centrosomal_protein_97,chr3:101442769-101489406:+,FAM172BP->chr3:101237711-101242731:+,family_with_sequence_similarity_172_member_B,_pseudogene	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--IGH@	5	0	MIR142	1039	chr17:56409831:-	IGH@	114480	chr14:106208559:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0545	0	MIR142->chr17:56408245-56409869:-,microRNA_142,IGH@->Oncogene{Bushman}	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0545	TRUE	0	1	0	3	1	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	4	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	15830	0	0	1	0.0436	0.0436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0872	FALSE	231	217	16	283	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	8	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1289	0	0.01	1	0.0327	0.0873	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.12	FALSE	216	209	16	281	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	4	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	15790	0	0	1	0.0436	0.0436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0872	FALSE	231	217	16	283	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	5	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0545	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0545	FALSE	369	2501	205	193	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RDH13--PPP6R1	5	0	RDH13	13227	chr19:55558755:-	PPP6R1	26396	chr19:55758477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0545	0	RDH13->chr19:55550476-55582659:-,retinol_dehydrogenase_13_(all-trans/9-cis),PPP6R1->chr19:55741148-55770363:-,protein_phosphatase_6_regulatory_subunit_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000350.4--PKM	4	3	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	15	1	0.32	0.0436	0.0327	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.0763	TRUE	0	0	0	14	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-CO1	3	7	MT-ND4	1843	chrM:11602:+	MT-CO1	6015	chrM:6540:+	INCL_NON_REF_SPLICE	YES	15862	22586	0	0	0.0327	0.0764	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1091	FALSE	19	92	11	16	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	3	7	MT-ND4	1824	chrM:11583:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	15369	0	0	1	0.0327	0.0764	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1091	FALSE	13	19	3	21	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOP2--CHD4	4	3	NOP2	6907	chr12:6671050:-	CHD4	36828	chr12:6680198:-	ONLY_REF_SPLICE	YES	191	405	0.04	0.02	0.0436	0.0327	LOCAL_REARRANGEMENT:-:[1392],NOP2->NOP2_nucleolar_protein,chr12:6666029-6677857:-,CHD4->ArcherDX_panel,FoundationOne_panel,chr12:6679249-6716642:-,chromodomain_helicase_DNA_binding_protein_4	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0763	TRUE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAWR--RP11-390N6.1	3	7	PAWR	9188	chr12:80007355:-	RP11-390N6.1	30988	chr12:79354494:-	ONLY_REF_SPLICE	YES	24	0	0.29	1	0.0327	0.0764	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP11-390N6.1->chr12:79354038-79439424:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.1091	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR20--TECPR2	4	3	WDR20	1670	chr14:102606509:+	TECPR2	25600	chr14:102842987:+	ONLY_REF_SPLICE	YES	39	5	0.15	0.58	0.0436	0.0327	WDR20->WD_repeat_domain_20,chr14:102605840-102691184:+,TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.58	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL672183.2--CDC16	4	2	AL672183.2	1369	chr1:249231148:+	CDC16	22174	chr13:115037753:+	INCL_NON_REF_SPLICE	YES	0	89	1	0.06	0.0436	0.0218	AL672183.2->chr1:249230780-249231242:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0654	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	3	6	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	4	15	0.69	0.38	0.0327	0.0655	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.69	0.0982	TRUE	0	1	0	24	1	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	6	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	11210	0	0	1	0.0327	0.0655	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0982	FALSE	182	97	9	327	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-59N23.1--CMAS	4	2	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	10	69	0.38	0.08	0.0436	0.0218	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.38	0.0654	TRUE	21	102	17	28	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	4	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	31	0	0.16	1	0.0436	0.0218	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.0654	FALSE	272	151	14	158	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBX5--ZNF385A	4	1	CBX5	1095	chr12:54673792:-	ZNF385A	23995	chr12:54778348:-	ONLY_REF_SPLICE	YES	43	2	0.1	0.71	0.0436	0.0109	LOCAL_REARRANGEMENT:-:[89031],CBX5->chr12:54624724-54673886:-,chromobox_5,ZNF385A->chr12:54762917-54785082:-,zinc_finger_protein_385A	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.71	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP128--DIO2	1	13	CEP128	34944	chr14:80971255:-	DIO2	49260	chr14:80683080:-	ONLY_REF_SPLICE	NO	124	1	0.1	0.93	0.0109	0.1418	NEIGHBORS[89230],CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,DIO2->Oncogene{Bushman},chr14:80663873-80854100:-,deiodinase,_iodothyronine,_type_II	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.93	0.1527	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM46C--WDR3	4	1	FAM46C	1220	chr1:118148775:+	WDR3	11957	chr1:118475911:+	ONLY_REF_SPLICE	YES	16	47	0.24	0.1	0.0436	0.0109	FAM46C->ArcherDX_panel,FoundationOne_panel,chr1:118148556-118170994:+,family_with_sequence_similarity_46_member_C,WDR3->WD_repeat_domain_3,chr1:118472343-118509165:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.24	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HLA-C--MT-ND1	4	1	HLA-C	1507	chr6:31239401:-	MT-ND1	7513	chrM:3437:+	INCL_NON_REF_SPLICE	YES	8426	3484	0	0	0.0436	0.0109	HLA-C->chr6:31236526-31239907:-,major_histocompatibility_complex,_class_I,_C,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0545	FALSE	0	0	0	3	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	5	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	16241	0	0	1	0.0327	0.0545	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0872	FALSE	231	217	16	283	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CFDP1--ADIPOR2	3	4	CFDP1	5421	chr16:75445723:-	ADIPOR2	24521	chr12:1863424:+	ONLY_REF_SPLICE	YES	97	16	0.07	0.3	0.0327	0.0436	CFDP1->chr16:75327596-75467383:-,craniofacial_development_protein_1,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.3	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COL6A3--HLA-B	4	0	COL6A3	16455	chr2:238277347:-	HLA-B	57935	chr6:31324524:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3,HLA-B->chr6:31321649-31324965:-,major_histocompatibility_complex,_class_I,_B	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--IGH@	4	0	MIR142	1039	chr17:56409831:-	IGH@	113828	chr14:106209211:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	MIR142->chr17:56408245-56409869:-,microRNA_142,IGH@->Oncogene{Bushman}	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	TRUE	0	1	0	3	1	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	FALSE	183	104	9	328	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	15894	426	0	0.02	0.0327	0.0436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0763	FALSE	231	217	16	283	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	3	0.78	0.7	0.0327	0.0436	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.78	0.0763	FALSE	16	356	14	466	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR20--TECPR2	4	0	WDR20	1485	chr14:102606324:+	TECPR2	25600	chr14:102842987:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	WDR20->WD_repeat_domain_20,chr14:102605840-102691184:+,TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	3	MT-ATP6	1121	chrM:8647:+	MT-CO1	4698	chrM:5920:+	INCL_NON_REF_SPLICE	YES	9392	0	0	1	0.0327	0.0327	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0654	FALSE	182	97	9	327	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	3	MT-ND4	1824	chrM:11583:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15376	1	0	0.86	0.0327	0.0327	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.86	0.0654	FALSE	231	217	16	283	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15412	26	0	0.19	0.0327	0.0327	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.19	0.0654	FALSE	231	217	16	283	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-CO1	3	3	MT-ND4	1285	chrM:11044:+	MT-CO1	5695	chrM:6220:+	INCL_NON_REF_SPLICE	YES	15040	18912	0	0	0.0327	0.0327	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0654	FALSE	19	89	11	16	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLSCR1--BFSP2-AS1	3	3	PLSCR1	1398	chr3:146262254:-	BFSP2-AS1	20448	chr3:133164419:-	ONLY_REF_SPLICE	YES	56	2	0.1	0.75	0.0327	0.0327	PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1,BFSP2-AS1->BFSP2_antisense_RNA_1,chr3:133148113-133174620:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.75	0.0654	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ2A--PRIM1	2	6	BAZ2A	3376	chr12:57023909:-	PRIM1	29013	chr12:57140816:-	ONLY_REF_SPLICE	YES	102	43	0.07	0.16	0.0218	0.0655	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[94780],BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,PRIM1->chr12:57125380-57146157:-,primase_(DNA)_subunit_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.16	0.0873	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-640M9.1--SEC22B	2	6	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	25754	chr1:145103908:+	ONLY_REF_SPLICE	YES	37	382	0.18	0.02	0.0218	0.0655	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.18	0.0873	TRUE	14	18	7	11	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--IGH@	3	1	MIR142	1039	chr17:56409831:-	IGH@	110327	chr14:106237742:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.0109	MIR142->chr17:56408245-56409869:-,microRNA_142,IGH@->Oncogene{Bushman}	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-CO1	3	1	MT-ND4	1234	chrM:10993:+	MT-CO1	6016	chrM:6541:+	INCL_NON_REF_SPLICE	YES	12740	22704	0	0	0.0327	0.0109	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0436	FALSE	19	89	11	16	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	3	1	MT-ND4	1212	chrM:10971:+	MT-RNR2	5959	chrM:2251:+	INCL_NON_REF_SPLICE	NO	12511	8776	0	0	0.0327	0.0109	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0436	FALSE	13	19	3	21	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1L12.3--SLC5A12	3	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0327	0.0109	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0436	TRUE	3	101	0	60	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	3	0	AC104389.28	1093	chr11:5526790:-	HBE1	13750	chr11:5291386:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	TRUE	0	16	0	53	13	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	3	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	TRUE	347	1186	183	220	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HLA-C--CALCOCO2	3	0	HLA-C	4128	chr6:31236780:-	CALCOCO2	7420	chr17:46908387:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	HLA-C->chr6:31236526-31239907:-,major_histocompatibility_complex,_class_I,_C,CALCOCO2->calcium_binding_and_coiled-coil_domain_2,chr17:46908350-46943884:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--IGH@	3	0	MIR142	1039	chr17:56409831:-	IGH@	122546	chr14:106111126:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	MIR142->chr17:56408245-56409869:-,microRNA_142,IGH@->Oncogene{Bushman}	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5332	chrM:6554:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	FALSE	183	104	9	328	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	FALSE	499	1288	110	792	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	3	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	FALSE	369	2501	205	193	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRDX2--MT-ND4L	3	0	PRDX2	4517	chr19:12907789:-	MT-ND4L	7674	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	PRDX2->chr19:12907634-12912694:-,peroxiredoxin_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-59N23.3--RP11-729I10.2	3	0	RP11-59N23.3	1459	chr12:21815705:+	RP11-729I10.2	7910	chr12:22022516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	NEIGHBORS[67178],RP11-59N23.3->chr12:21815247-21912966:+,RP11-729I10.2->chr12:21980144-22040891:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	FALSE	0	2	0	5	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRDMT1--ST8SIA6	3	0	TRDMT1	1484	chr10:17243570:-	ST8SIA6	27908	chr10:17495656:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	TRDMT1->chr10:17184253-17244053:-,tRNA_aspartic_acid_methyltransferase_1,ST8SIA6->ST8_alpha-N-acetyl-neuraminide_alpha-2,8-sialyltransferase_6,chr10:17360382-17496329:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXL13--RASA4B	2	3	FBXL13	12910	chr7:102603980:-	RASA4B	48065	chr7:102125606:-	ONLY_REF_SPLICE	YES	3	410	0.62	0.01	0.0218	0.0327	FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-,RASA4B->RAS_p21_protein_activator_4B,chr7:102122892-102158228:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.62	0.0545	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0.0327	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0545	FALSE	515	4851	409	746	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP210--IQSEC1	2	1	NUP210	21089	chr3:13393379:-	IQSEC1	51038	chr3:12983365:-	ONLY_REF_SPLICE	YES	354	0	0.01	1	0.0218	0.0109	NUP210->chr3:13357737-13461809:-,nucleoporin_210kDa,IQSEC1->IQ_motif_and_Sec7_domain_1,chr3:12938719-13114617:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0327	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIK3C3--LINC00907	2	1	PIK3C3	9095	chr18:39570518:+	LINC00907	57544	chr18:40013015:+	ONLY_REF_SPLICE	YES	47	13	0.06	0.19	0.0218	0.0109	NEIGHBORS[71453],PIK3C3->chr18:39535171-39667794:+,phosphatidylinositol_3-kinase_catalytic_subunit_type_3,LINC00907->chr18:39739247-40271387:+,long_intergenic_non-protein_coding_RNA_907	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.19	0.0327	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIK3C3--LINC00907	2	1	PIK3C3	9095	chr18:39570518:+	LINC00907	58870	chr18:40033897:+	ONLY_REF_SPLICE	YES	47	12	0.06	0.2	0.0218	0.0109	NEIGHBORS[71453],PIK3C3->chr18:39535171-39667794:+,phosphatidylinositol_3-kinase_catalytic_subunit_type_3,LINC00907->chr18:39739247-40271387:+,long_intergenic_non-protein_coding_RNA_907	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.2	0.0327	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	2	1	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0218	0.0109	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0327	TRUE	0	0	0	16	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM50B--DONSON	1	5	TMEM50B	13354	chr21:34819325:-	DONSON	34319	chr21:34932013:-	ONLY_REF_SPLICE	YES	57	15	0.1	0.29	0.0109	0.0545	LOCAL_REARRANGEMENT:-:[79530],TMEM50B->chr21:34804792-34852318:-,transmembrane_protein_50B,DONSON->chr21:34931848-34961014:-,downstream_neighbor_of_SON	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.29	0.0654	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CFDP1--ADIPOR2	1	4	CFDP1	5421	chr16:75445723:-	ADIPOR2	22092	chr12:1812052:+	ONLY_REF_SPLICE	YES	97	19	0.05	0.21	0.0109	0.0436	CFDP1->chr16:75327596-75467383:-,craniofacial_development_protein_1,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.21	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGF14-IT1--FGF14	2	0	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0218	TRUE	71	201	23	28	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GALNT18--GNAS	2	0	GALNT18	1647	chr11:11642906:-	GNAS	34617	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GALNT18->chr11:11292423-11643552:-,polypeptide_N-acetylgalactosaminyltransferase_18,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--ERBB4	2	0	IKZF2	5217	chr2:214012432:-	ERBB4	30646	chr2:212989628:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0218	TRUE	0	1	0	2	1	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRDM1--LRBA	2	0	PRDM1	6630	chr6:106547427:+	LRBA	46081	chr4:151753128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	PRDM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},PR_domain_1,chr6:106534195-106557814:+,LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-59N23.3--RP11-729I10.2	2	0	RP11-59N23.3	1459	chr12:21815705:+	RP11-729I10.2	6794	chr12:21984013:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	NEIGHBORS[67178],RP11-59N23.3->chr12:21815247-21912966:+,RP11-729I10.2->chr12:21980144-22040891:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0218	FALSE	0	2	0	3	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	2	0	STX18-AS1	2665	chr4:4546634:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0218	TRUE	3	17	0	6	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	24436	chr10:114650725:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0218	FALSE	21	3	0	16	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR20--TECPR2	2	0	WDR20	1670	chr14:102606509:+	TECPR2	26891	chr14:102873675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	WDR20->WD_repeat_domain_20,chr14:102605840-102691184:+,TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR20--TECPR2	2	0	WDR20	1485	chr14:102606324:+	TECPR2	26891	chr14:102873675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	WDR20->WD_repeat_domain_20,chr14:102605840-102691184:+,TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATF2--CHN1	1	3	ATF2	2432	chr2:176015788:-	CHN1	34087	chr2:175711685:-	ONLY_REF_SPLICE	YES	77	10	0.05	0.29	0.0109	0.0327	NEIGHBORS[66881],ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-,CHN1->Oncogene{Bushman},chimerin_1,chr2:175664091-175870097:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.29	0.0436	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-640M9.1--SEC22B	1	3	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	NO	37	330	0.1	0.01	0.0109	0.0327	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.1	0.0436	FALSE	20	16	6	14	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0109	0.0327	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0436	FALSE	467	2173	244	435	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RDH13--PPP6R1	1	1	RDH13	13509	chr19:55558473:-	PPP6R1	26396	chr19:55758477:-	ONLY_REF_SPLICE	YES	47	6	0.04	0.25	0.0109	0.0109	RDH13->chr19:55550476-55582659:-,retinol_dehydrogenase_13_(all-trans/9-cis),PPP6R1->chr19:55741148-55770363:-,protein_phosphatase_6_regulatory_subunit_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.25	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	1	1	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	NO	21	49	0.09	0.04	0.0109	0.0109	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.09	0.0218	TRUE	4	3	0	21	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	1	1	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0109	0.0109	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.0218	TRUE	37	101	7	40	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TFRC--NPLOC4	1	1	TFRC	19706	chr3:195780289:-	NPLOC4	30472	chr17:79596831:-	ONLY_REF_SPLICE	YES	19383	25	0	0.07	0.0109	0.0109	TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor,NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000697
A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TYW1B--CALN1	1	1	TYW1B	15056	chr7:72081657:-	CALN1	27073	chr7:71743795:-	ONLY_REF_SPLICE	YES	17	13	0.11	0.13	0.0109	0.0109	TYW1B->chr7:72023729-72298777:-,tRNA-yW_synthesizing_protein_1_homolog_B,CALN1->calneuron_1,chr7:71244476-71912136:-	A3KAW_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.13	0.0218	TRUE	1	3	0	1	3	TRUE	ACH-000697
LC1F_LUNG	ADNP2--PLIN3	249	77	ADNP2	3112	chr18:77875533:+	PLIN3	14757	chr19:4867669:-	INCL_NON_REF_SPLICE	YES	13	0	0.96	1	3.3514	1.0364	ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+,PLIN3->chr19:4838353-4867780:-,perilipin_3	LC1F_LUNG	0.96	1	4.3878	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	XRCC4--C7orf10	100	31	XRCC4	3492	chr5:82407022:+	C7orf10	34349	chr7:40789033:+	ONLY_REF_SPLICE	YES	26	2	0.83	0.98	1.3459	0.4172	XRCC4->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_4,chr5:82373317-82649606:+,C7orf10->chr7:40174575-40900362:+	LC1F_LUNG	0.83	0.98	1.7631	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	PCYT1A--RBFOX1	82	23	PCYT1A	8116	chr3:195974238:-	RBFOX1	26948	chr16:6704604:+	ONLY_REF_SPLICE	YES	206	0	0.34	1	1.1037	0.3096	PCYT1A->chr3:195941093-196014828:-,phosphate_cytidylyltransferase_1,_choline,_alpha,RBFOX1->RNA_binding_protein,_fox-1_homolog_1,chr16:6069095-7763340:+	LC1F_LUNG	0.34	1	1.4133	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	TIMM23B--LINC00843	81	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0902	0.2288	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LC1F_LUNG	1	1	1.319	TRUE	508	994	45	981	0	FALSE	ACH-000705
LC1F_LUNG	CACNA2D1--SEMA3E	61	12	CACNA2D1	4816	chr7:81964451:-	SEMA3E	55743	chr7:83098618:-	ONLY_REF_SPLICE	YES	8	0	0.9	1	0.821	0.1615	CACNA2D1->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_1,chr7:81575760-82073114:-,SEMA3E->chr7:82993222-83278326:-,semaphorin_3E	LC1F_LUNG	0.9	1	0.9825	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	TIMM23--RP11-464F9.1	58	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	141	0	0.31	1	0.7806	0.0538	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LC1F_LUNG	0.31	1	0.8344	TRUE	519	3926	326	965	0	FALSE	ACH-000705
LC1F_LUNG	STON2--RP11-299L17.3	48	15	STON2	2681	chr14:81893446:-	RP11-299L17.3	23146	chr14:81908786:-	ONLY_REF_SPLICE	YES	12	0	0.84	1	0.646	0.2019	LOCAL_REARRANGEMENT:-:[5522],STON2->chr14:81727000-81902809:-,stonin_2,RP11-299L17.3->chr14:81908331-81916501:-	LC1F_LUNG	0.84	1	0.8479	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	MT-ND6--MT-TE	44	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5922	0.0942	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LC1F_LUNG	1	1	0.6864	FALSE	499	1288	110	792	0	FALSE	ACH-000705
LC1F_LUNG	MT-TA--MT-TC	44	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5922	0.0538	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LC1F_LUNG	1	1	0.646	FALSE	462	80	0	856	0	FALSE	ACH-000705
LC1F_LUNG	TBL1XR1--YEATS2	32	3	TBL1XR1	1353	chr3:176914909:-	YEATS2	49609	chr3:183490093:+	ONLY_REF_SPLICE	YES	12	62	0.74	0.36	0.4307	0.0404	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+	LC1F_LUNG	0.36	0.74	0.4711	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	30	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4038	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	1	1	0.4038	FALSE	230	193	14	283	0	FALSE	ACH-000705
LC1F_LUNG	TBL1XR1--YEATS2	25	1	TBL1XR1	1353	chr3:176914909:-	YEATS2	50868	chr3:183491421:+	ONLY_REF_SPLICE	YES	12	89	0.68	0.23	0.3365	0.0135	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+	LC1F_LUNG	0.23	0.68	0.35	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	ADNP2--PLIN3	3	77	ADNP2	3122	chr18:77875543:+	PLIN3	14757	chr19:4867669:-	INCL_NON_REF_SPLICE	YES	13	0	0.86	1	0.0404	1.0364	ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+,PLIN3->chr19:4838353-4867780:-,perilipin_3	LC1F_LUNG	0.86	1	1.0768	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	ANKRD11--TMA7	20	8	ANKRD11	25630	chr16:89350589:-	TMA7	38242	chr3:48481664:+	INCL_NON_REF_SPLICE	YES	23	0	0.55	1	0.2692	0.1077	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,TMA7->chr3:48481667-48485616:+,translation_machinery_associated_7_homolog	LC1F_LUNG	0.55	1	0.3769	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	AP000525.9--LA16c-60G3.6	20	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	13	0	0.63	1	0.2692	0.0269	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	LC1F_LUNG	0.63	1	0.2961	TRUE	0	42	0	133	42	FALSE	ACH-000705
LC1F_LUNG	C15orf57--CBX3	17	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	37	32	0.39	0.43	0.2288	0.0942	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LC1F_LUNG	0.39	0.43	0.323	TRUE	267	562	48	632	0	FALSE	ACH-000705
LC1F_LUNG	RP11-444D3.1--SOX5	17	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2288	0.0808	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LC1F_LUNG	1	1	0.3096	TRUE	477	1352	189	275	0	FALSE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-RNR2	17	4	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	12151	0	0	1	0.2288	0.0538	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	1	0.2826	FALSE	63	17	1	58	0	FALSE	ACH-000705
LC1F_LUNG	PANX2--MOV10L1	17	4	PANX2	1226	chr22:50609385:+	MOV10L1	33277	chr22:50591474:+	ONLY_REF_SPLICE	YES	76	3	0.22	0.88	0.2288	0.0538	LOCAL_REARRANGEMENT:+:[9041],PANX2->chr22:50609160-50618723:+,pannexin_2,MOV10L1->Mov10_RISC_complex_RNA_helicase_like_1,chr22:50528308-50600119:+	LC1F_LUNG	0.22	0.88	0.2826	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	MT-ND5--MT-ATP8	16	2	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3601	8	0	0.69	0.2153	0.0269	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	0.69	0.2422	FALSE	43	37	8	105	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	16	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2153	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	1	1	0.2153	FALSE	230	198	14	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND6--MT-TE	12	16	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1615	0.2153	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LC1F_LUNG	1	1	0.3768	FALSE	499	1288	110	792	0	FALSE	ACH-000705
LC1F_LUNG	STON2--SEL1L	14	6	STON2	1145	chr14:81902665:-	SEL1L	23064	chr14:81994082:-	ONLY_REF_SPLICE	YES	22	97	0.48	0.17	0.1884	0.0808	LOCAL_REARRANGEMENT:-:[35084],STON2->chr14:81727000-81902809:-,stonin_2,SEL1L->Oncogene{Bushman},SEL1L_ERAD_E3_ligase_adaptor_subunit,chr14:81937893-82000205:-	LC1F_LUNG	0.17	0.48	0.2692	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	PSPC1--ZMYM5	13	9	PSPC1	5212	chr13:20325411:-	ZMYM5	22844	chr13:20411961:-	ONLY_REF_SPLICE	YES	178	29	0.11	0.43	0.175	0.1211	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_REARRANGEMENT:-:[40480],PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,ZMYM5->chr13:20397622-20437776:-,zinc_finger_MYM-type_containing_5	LC1F_LUNG	0.11	0.43	0.2961	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	15	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2019	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	1	1	0.2019	FALSE	230	193	14	283	0	FALSE	ACH-000705
LC1F_LUNG	ROCK2--LINC00276	13	6	ROCK2	4937	chr2:11426665:-	LINC00276	39175	chr2:14457227:-	ONLY_REF_SPLICE	YES	23	0	0.45	1	0.175	0.0808	ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,LINC00276->chr2:13850656-14541087:-,long_intergenic_non-protein_coding_RNA_276	LC1F_LUNG	0.45	1	0.2558	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	STON2--SEL1L	12	10	STON2	2681	chr14:81893446:-	SEL1L	23064	chr14:81994082:-	ONLY_REF_SPLICE	YES	12	97	0.65	0.18	0.1615	0.1346	LOCAL_REARRANGEMENT:-:[35084],STON2->chr14:81727000-81902809:-,stonin_2,SEL1L->Oncogene{Bushman},SEL1L_ERAD_E3_ligase_adaptor_subunit,chr14:81937893-82000205:-	LC1F_LUNG	0.18	0.65	0.2961	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-RNR2	13	3	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	11723	13381	0	0	0.175	0.0404	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	0	0.2154	FALSE	63	17	1	58	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND5--MT-ATP8	12	7	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1615	0.0942	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	1	1	0.2557	FALSE	43	37	8	105	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND6--MT-TE	10	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.1346	0.2019	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LC1F_LUNG	0.89	1	0.3365	FALSE	499	1288	110	792	0	FALSE	ACH-000705
LC1F_LUNG	ADNP2--PLIN3	3	42	ADNP2	3046	chr18:77875467:+	PLIN3	14757	chr19:4867669:-	INCL_NON_REF_SPLICE	YES	9	0	0.83	1	0.0404	0.5653	ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+,PLIN3->chr19:4838353-4867780:-,perilipin_3	LC1F_LUNG	0.83	1	0.6057	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	BRAF--RP5-968D22.1	9	14	BRAF	9508	chr7:140494108:-	RP5-968D22.1	35382	chr1:168376556:-	INCL_NON_REF_SPLICE	YES	46	0	0.33	1	0.1211	0.1884	BRAF->ArcherDX_panel,B-Raf_proto-oncogene,_serine/threonine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:140419127-140624564:-,RP5-968D22.1->chr1:168370067-168391894:-	LC1F_LUNG	0.33	1	0.3095	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	HSP90AB1--MT-RNR2	12	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2852	0	0	1	0.1615	0.0135	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	1	0.175	FALSE	13	9	0	364	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND6--MT-TE	6	25	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0808	0.3365	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LC1F_LUNG	0.91	1	0.4173	FALSE	499	1288	110	792	0	FALSE	ACH-000705
LC1F_LUNG	RP11-37B2.1--TMEM55A	11	4	RP11-37B2.1	1683	chr8:90769273:-	TMEM55A	27698	chr8:92008972:-	ONLY_REF_SPLICE	YES	1	30	0.94	0.33	0.1481	0.0538	RP11-37B2.1->chr8:90621638-90769955:-,TMEM55A->chr8:92006024-92053292:-,transmembrane_protein_55A	LC1F_LUNG	0.33	0.94	0.2019	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-RNR2	11	3	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	12151	13805	0	0	0.1481	0.0404	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	0	0.1885	FALSE	63	17	1	58	0	FALSE	ACH-000705
LC1F_LUNG	C15orf57--CBX3	10	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	35	33	0.3	0.31	0.1346	0.0673	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LC1F_LUNG	0.3	0.31	0.2019	TRUE	267	562	48	632	0	FALSE	ACH-000705
LC1F_LUNG	MT-TA--MT-TC	10	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1346	0.0538	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LC1F_LUNG	1	1	0.1884	FALSE	462	80	0	856	0	FALSE	ACH-000705
LC1F_LUNG	PSPC1--ZMYM5	8	12	PSPC1	5212	chr13:20325411:-	ZMYM5	21680	chr13:20413125:-	ONLY_REF_SPLICE	YES	178	20	0.1	0.5	0.1077	0.1615	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_REARRANGEMENT:-:[40480],PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,ZMYM5->chr13:20397622-20437776:-,zinc_finger_MYM-type_containing_5	LC1F_LUNG	0.1	0.5	0.2692	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-RNR2	10	3	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	11711	13437	0	0	0.1346	0.0404	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	0	0.175	FALSE	63	17	1	58	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	10	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	16656	1	0	0.92	0.1346	0.0135	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	0.92	0.1481	FALSE	231	205	14	283	0	FALSE	ACH-000705
LC1F_LUNG	XRCC4--C7orf10	2	32	XRCC4	3492	chr5:82407022:+	C7orf10	33271	chr7:40723655:+	ONLY_REF_SPLICE	YES	26	2	0.57	0.94	0.0269	0.4307	XRCC4->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_4,chr5:82373317-82649606:+,C7orf10->chr7:40174575-40900362:+	LC1F_LUNG	0.57	0.94	0.4576	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	MT-ND6--MT-TE	8	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1077	0.0942	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LC1F_LUNG	1	1	0.2019	FALSE	499	1288	110	792	0	FALSE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-CO1	9	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12612	18424	0	0	0.1211	0.0269	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LC1F_LUNG	0	0	0.148	FALSE	183	104	9	328	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND5--MT-ATP8	9	2	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	NO	0	463	1	0.02	0.1211	0.0269	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0.02	1	0.148	FALSE	43	37	8	105	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-RNR2	9	1	MT-ND4	1209	chrM:10968:+	MT-RNR2	5415	chrM:1707:+	INCL_NON_REF_SPLICE	YES	13203	0	0	1	0.1211	0.0135	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	1	0.1346	FALSE	13	19	3	21	0	FALSE	ACH-000705
LC1F_LUNG	PPP2CB--TEX15	9	1	PPP2CB	11885	chr8:30643727:-	TEX15	33911	chr8:30697480:-	ONLY_REF_SPLICE	YES	66	4	0.13	0.71	0.1211	0.0135	LOCAL_REARRANGEMENT:-:[17230],PPP2CB->chr8:30631973-30671830:-,protein_phosphatase_2_catalytic_subunit_beta,TEX15->chr8:30689060-30748122:-,testis_expressed_15	LC1F_LUNG	0.13	0.71	0.1346	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	RP11-123O10.4--GRIP1	9	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1211	0.0135	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LC1F_LUNG	1	1	0.1346	FALSE	416	2512	207	587	0	FALSE	ACH-000705
LC1F_LUNG	RP11-385J1.2--KCNMB2	8	5	RP11-385J1.2	1917	chr3:178577277:-	KCNMB2	24210	chr3:178543376:+	ONLY_REF_SPLICE	YES	38	0	0.25	1	0.1077	0.0673	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	LC1F_LUNG	0.25	1	0.175	TRUE	0	0	0	2	0	TRUE	ACH-000705
LC1F_LUNG	MT-ND4--MT-RNR2	7	8	MT-ND4	1754	chrM:11513:+	MT-RNR2	5925	chrM:2217:+	INCL_NON_REF_SPLICE	YES	15886	14077	0	0	0.0942	0.1077	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	0	0.2019	FALSE	13	19	3	21	0	FALSE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-RNR2	8	3	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	NO	10230	0	0	1	0.1077	0.0404	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	1	0.1481	FALSE	63	17	1	58	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	8	2	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	16147	1442	0	0.01	0.1077	0.0269	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	0.01	0.1346	FALSE	231	217	16	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND5--MT-ATP8	8	1	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5282	51	0	0.15	0.1077	0.0135	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	0.15	0.1212	FALSE	43	37	8	105	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	8	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1077	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	1	1	0.1077	FALSE	231	205	14	283	0	FALSE	ACH-000705
LC1F_LUNG	BRAF--RP5-968D22.1	6	7	BRAF	9508	chr7:140494108:-	RP5-968D22.1	36462	chr1:168371581:-	ONLY_REF_SPLICE	YES	46	1	0.22	0.93	0.0808	0.0942	BRAF->ArcherDX_panel,B-Raf_proto-oncogene,_serine/threonine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:140419127-140624564:-,RP5-968D22.1->chr1:168370067-168391894:-	LC1F_LUNG	0.22	0.93	0.175	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	ERGIC1--GPR98	7	2	ERGIC1	1159	chr5:172261436:+	GPR98	131732	chr5:90281161:+	ONLY_REF_SPLICE	YES	5	13	0.64	0.41	0.0942	0.0269	ERGIC1->chr5:172261278-172379688:+,endoplasmic_reticulum-golgi_intermediate_compartment_1,GPR98->chr5:89825161-90460038:+	LC1F_LUNG	0.41	0.64	0.1211	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	MT-ND4--MT-RNR2	5	10	MT-ND4	1843	chrM:11602:+	MT-RNR2	5709	chrM:2001:+	INCL_NON_REF_SPLICE	NO	16046	12250	0	0	0.0673	0.1346	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	0	0.2019	FALSE	13	19	3	21	0	FALSE	ACH-000705
LC1F_LUNG	HSP90AB1--MT-RNR2	7	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2832	0	0	1	0.0942	0.0135	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	1	0.1077	FALSE	13	9	0	364	0	FALSE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-CO1	7	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10569	18585	0	0	0.0942	0.0135	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LC1F_LUNG	0	0	0.1077	FALSE	183	104	9	328	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND5--MT-ND6	7	1	MT-ND5	2823	chrM:14159:+	MT-ND6	6285	chrM:14201:-	INCL_NON_REF_SPLICE	YES	0	1427	1	0.01	0.0942	0.0135	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	LC1F_LUNG	0.01	1	0.1077	FALSE	26	124	4	93	0	FALSE	ACH-000705
LC1F_LUNG	TBL1XR1--YEATS2	7	1	TBL1XR1	2134	chr3:176914128:-	YEATS2	50868	chr3:183491421:+	ONLY_REF_SPLICE	YES	16	89	0.33	0.08	0.0942	0.0135	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+	LC1F_LUNG	0.08	0.33	0.1077	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	6	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15615	50	0	0.15	0.0808	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	0.15	0.1212	FALSE	231	217	16	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-RNR2	3	15	MT-ND4	2338	chrM:12097:+	MT-RNR2	5386	chrM:1678:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0.2019	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	1	1	0.2423	FALSE	13	18	3	21	0	FALSE	ACH-000705
LC1F_LUNG	PCYT1A--RBFOX1	6	3	PCYT1A	6159	chr3:195984659:-	RBFOX1	26948	chr16:6704604:+	ONLY_REF_SPLICE	YES	251	0	0.03	1	0.0808	0.0404	PCYT1A->chr3:195941093-196014828:-,phosphate_cytidylyltransferase_1,_choline,_alpha,RBFOX1->RNA_binding_protein,_fox-1_homolog_1,chr16:6069095-7763340:+	LC1F_LUNG	0.03	1	0.1212	TRUE	0	0	0	1	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-RNR2	3	14	MT-ND4	2053	chrM:11812:+	MT-RNR2	5402	chrM:1694:+	INCL_NON_REF_SPLICE	YES	13767	0	0	1	0.0404	0.1884	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	1	0.2288	FALSE	13	19	3	21	0	FALSE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-CO1	6	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10174	18424	0	0	0.0808	0.0135	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LC1F_LUNG	0	0	0.0943	FALSE	183	104	9	328	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	6	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16192	7	0	0.5	0.0808	0.0135	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	0.5	0.0943	FALSE	231	217	16	283	0	FALSE	ACH-000705
LC1F_LUNG	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.44	0.0808	0.0135	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LC1F_LUNG	0.44	1	0.0943	TRUE	458	1351	185	561	0	FALSE	ACH-000705
LC1F_LUNG	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	23	1	0.23	0.0808	0.0135	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LC1F_LUNG	0.23	1	0.0943	TRUE	465	1949	224	605	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	4	8	MT-ND4	2214	chrM:11973:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	5082	0	0	1	0.0538	0.1077	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	1	0.1615	FALSE	222	211	16	282	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0808	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LC1F_LUNG	1	1	0.0808	FALSE	499	1288	110	792	0	FALSE	ACH-000705
LC1F_LUNG	RP11-120D5.1--MID1	6	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0808	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LC1F_LUNG	1	1	0.0808	FALSE	16	356	14	466	0	FALSE	ACH-000705
LC1F_LUNG	RP11-444D3.1--SOX5	4	8	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0538	0.1077	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LC1F_LUNG	1	1	0.1615	TRUE	160	277	29	98	0	FALSE	ACH-000705
LC1F_LUNG	WIPF2--CASC3	5	4	WIPF2	3370	chr17:38412774:+	CASC3	22180	chr17:38318006:+	ONLY_REF_SPLICE	YES	111	106	0.07	0.08	0.0673	0.0538	LOCAL_REARRANGEMENT:+:[47120],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	LC1F_LUNG	0.07	0.08	0.1211	TRUE	0	0	0	1	0	FALSE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-RNR2	5	3	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	10666	13812	0	0	0.0673	0.0404	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	0	0.1077	FALSE	63	17	1	58	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	5	3	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14737	50	0	0.14	0.0673	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	0.14	0.1077	FALSE	231	217	16	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	5	3	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	16033	0	0	1	0.0673	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	1	0.1077	FALSE	231	217	16	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	5	3	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	14737	161	0	0.05	0.0673	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	0.05	0.1077	FALSE	231	217	16	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-RNR2	5	2	MT-ATP6	1121	chrM:8647:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	YES	10594	13381	0	0	0.0673	0.0269	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	0	0.0942	FALSE	63	17	1	58	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	4	6	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2577	50	0	0.17	0.0538	0.0808	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	0.17	0.1346	FALSE	216	209	16	281	0	FALSE	ACH-000705
LC1F_LUNG	PAK4--MT-ND4L	5	2	PAK4	12918	chr19:39669187:+	MT-ND4L	20189	chrM:10471:+	INCL_NON_REF_SPLICE	YES	122	0	0.05	1	0.0673	0.0269	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LC1F_LUNG	0.05	1	0.0942	FALSE	0	0	0	7	0	FALSE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-RNR2	3	9	MT-ATP6	1516	chrM:9042:+	MT-RNR2	4710	chrM:1699:+	INCL_NON_REF_SPLICE	NO	6040	0	0	1	0.0404	0.1211	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	1	0.1615	FALSE	63	17	1	58	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-RNR2	5	1	MT-ND4	1264	chrM:11023:+	MT-RNR2	5984	chrM:2276:+	INCL_NON_REF_SPLICE	YES	14670	13218	0	0	0.0673	0.0135	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	0	0.0808	FALSE	13	19	3	21	0	FALSE	ACH-000705
LC1F_LUNG	ROCK2--LINC00276	5	1	ROCK2	4937	chr2:11426665:-	LINC00276	45562	chr2:13981739:-	ONLY_REF_SPLICE	YES	23	0	0.21	1	0.0673	0.0135	ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,LINC00276->chr2:13850656-14541087:-,long_intergenic_non-protein_coding_RNA_276	LC1F_LUNG	0.21	1	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	2255	chrM:12014:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	2165	0	0.01	1	0.0404	0.1077	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0.01	1	0.1481	FALSE	216	209	16	281	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND5--MT-ND6	4	4	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0.0538	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	LC1F_LUNG	1	1	0.1076	FALSE	26	124	4	93	0	FALSE	ACH-000705
LC1F_LUNG	RP11-662B19.2--WDR37	5	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0673	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	LC1F_LUNG	1	1	0.0673	TRUE	31	42	1	25	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	4	3	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14265	50	0	0.12	0.0538	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	0.12	0.0942	FALSE	231	215	16	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND5--MT-ND6	4	3	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	3216	1	0	0.0538	0.0404	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	LC1F_LUNG	0	1	0.0942	FALSE	26	124	4	93	0	FALSE	ACH-000705
LC1F_LUNG	PCYT1A--RBFOX1	3	7	PCYT1A	7276	chr3:195975078:-	RBFOX1	26948	chr16:6704604:+	ONLY_REF_SPLICE	YES	175	0	0.05	1	0.0404	0.0942	PCYT1A->chr3:195941093-196014828:-,phosphate_cytidylyltransferase_1,_choline,_alpha,RBFOX1->RNA_binding_protein,_fox-1_homolog_1,chr16:6069095-7763340:+	LC1F_LUNG	0.05	1	0.1346	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	PSPC1--ZMYM5	4	3	PSPC1	5212	chr13:20325411:-	ZMYM5	24213	chr13:20409829:-	ONLY_REF_SPLICE	YES	178	8	0.04	0.47	0.0538	0.0404	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_REARRANGEMENT:-:[40480],PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,ZMYM5->chr13:20397622-20437776:-,zinc_finger_MYM-type_containing_5	LC1F_LUNG	0.04	0.47	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-CO1	4	2	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	11433	0	0	1	0.0538	0.0269	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LC1F_LUNG	0	1	0.0807	FALSE	182	97	9	327	0	FALSE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-RNR2	3	6	MT-ATP6	1516	chrM:9042:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	NO	6040	13648	0	0	0.0404	0.0808	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	0	0.1212	FALSE	63	17	1	58	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	15615	1818	0	0	0.0538	0.0269	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	0	0.0807	FALSE	231	217	16	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	15851	741	0	0.01	0.0538	0.0269	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	0.01	0.0807	FALSE	231	217	16	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	17122	0	0	1	0.0538	0.0269	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	1	0.0807	FALSE	231	217	16	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-RNR2	3	6	MT-ND4	1510	chrM:11269:+	MT-RNR2	5386	chrM:1678:+	INCL_NON_REF_SPLICE	YES	17924	0	0	1	0.0404	0.0808	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	1	0.1212	FALSE	13	19	3	21	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND5--MT-ATP8	4	2	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2	8	0.75	0.43	0.0538	0.0269	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0.43	0.75	0.0807	FALSE	43	37	8	105	0	FALSE	ACH-000705
LC1F_LUNG	YWHAE--CRK	4	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1536	105	0	0.05	0.0538	0.0269	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	LC1F_LUNG	0	0.05	0.0807	FALSE	6	50	7	115	0	FALSE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	10563	16193	0	0	0.0538	0.0135	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LC1F_LUNG	0	0	0.0673	FALSE	183	104	9	328	0	FALSE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-CO1	4	1	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	12013	16824	0	0	0.0538	0.0135	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LC1F_LUNG	0	0	0.0673	FALSE	183	104	9	328	0	FALSE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-RNR2	3	5	MT-ATP6	1530	chrM:9056:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	5086	13812	0	0	0.0404	0.0673	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	0	0.1077	FALSE	63	17	1	58	0	FALSE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-RNR2	3	5	MT-ATP6	1279	chrM:8805:+	MT-RNR2	4745	chrM:1734:+	INCL_NON_REF_SPLICE	YES	16465	0	0	1	0.0404	0.0673	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	1	0.1077	FALSE	63	17	1	58	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	4	1	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	NO	15891	0	0	1	0.0538	0.0135	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	1	0.0673	FALSE	231	217	16	283	0	FALSE	ACH-000705
LC1F_LUNG	RP11-385J1.2--KCNMB2	3	5	RP11-385J1.2	2989	chr3:178559333:-	KCNMB2	24210	chr3:178543376:+	ONLY_REF_SPLICE	YES	39	0	0.17	1	0.0404	0.0673	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	LC1F_LUNG	0.17	1	0.1077	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	RP11-444D3.1--SOX5	2	9	RP11-444D3.1	9606	chr12:24366277:-	SOX5	13900	chr12:24102595:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0.1211	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LC1F_LUNG	1	1	0.148	TRUE	8	10	1	12	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	1	1	0.0538	FALSE	231	205	14	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	1	1	0.0538	FALSE	231	204	14	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	1	1	0.0538	FALSE	230	193	14	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	15974	0	0	1	0.0404	0.0538	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	1	0.0942	FALSE	231	217	16	283	0	FALSE	ACH-000705
LC1F_LUNG	NEK6--AFP	4	0	NEK6	1480	chr9:127020364:+	AFP	38419	chr4:74320953:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0538	0	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,AFP->alpha_fetoprotein,chr4:74296855-74321891:+	LC1F_LUNG	1	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	RP11-96H19.1--RP11-446N19.1	4	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0538	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LC1F_LUNG	1	1	0.0538	FALSE	515	4851	409	746	0	FALSE	ACH-000705
LC1F_LUNG	ITSN1--EVA1C	3	3	ITSN1	24684	chr21:35169912:+	EVA1C	75078	chr21:33840004:+	ONLY_REF_SPLICE	YES	11	26	0.35	0.19	0.0404	0.0404	ITSN1->chr21:35014706-35272165:+,intersectin_1,EVA1C->chr21:33784314-33887707:+,eva-1_homolog_C_(C._elegans)	LC1F_LUNG	0.19	0.35	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-CO1	3	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3317	18803	0	0	0.0404	0.0404	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LC1F_LUNG	0	0	0.0808	FALSE	183	104	9	328	0	FALSE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1555	chrM:9081:+	MT-RNR2	5408	chrM:2397:+	INCL_NON_REF_SPLICE	YES	3318	15337	0	0	0.0404	0.0404	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	0	0.0808	FALSE	63	17	1	58	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	7516	462	0	0.01	0.0404	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	0.01	0.0808	FALSE	231	215	16	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0.0404	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LC1F_LUNG	1	1	0.0808	FALSE	462	80	0	856	0	FALSE	ACH-000705
LC1F_LUNG	MIR205HG--C9orf3	3	2	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	68	174	0.07	0.03	0.0404	0.0269	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	LC1F_LUNG	0.03	0.07	0.0673	TRUE	86	303	14	25	0	FALSE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	9226	0	0	1	0.0404	0.0269	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	1	0.0673	FALSE	63	17	1	58	0	FALSE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	10565	13782	0	0	0.0404	0.0269	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	0	0.0673	FALSE	63	17	1	58	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-RNR2	3	2	MT-ND4	1253	chrM:11012:+	MT-RNR2	5441	chrM:1733:+	INCL_NON_REF_SPLICE	YES	13715	0	0	1	0.0404	0.0269	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	1	0.0673	FALSE	13	19	3	21	0	FALSE	ACH-000705
LC1F_LUNG	RP11-444D3.1--SOX5	2	6	RP11-444D3.1	8531	chr12:24430150:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0.0808	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LC1F_LUNG	1	1	0.1077	TRUE	13	17	1	13	0	FALSE	ACH-000705
LC1F_LUNG	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7241	chr6:44221064:+	MT-RNR2	10807	chrM:1680:+	INCL_NON_REF_SPLICE	YES	2842	0	0	1	0.0404	0.0135	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	1	0.0539	FALSE	13	9	0	364	0	FALSE	ACH-000705
LC1F_LUNG	ITSN1--EVA1C	2	5	ITSN1	24684	chr21:35169912:+	EVA1C	72757	chr21:33825620:+	ONLY_REF_SPLICE	YES	11	11	0.39	0.39	0.0269	0.0673	ITSN1->chr21:35014706-35272165:+,intersectin_1,EVA1C->chr21:33784314-33887707:+,eva-1_homolog_C_(C._elegans)	LC1F_LUNG	0.39	0.39	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	10437	17989	0	0	0.0404	0.0135	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LC1F_LUNG	0	0	0.0539	FALSE	183	104	9	328	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17122	0	0	1	0.0404	0.0135	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	1	0.0539	FALSE	231	217	16	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-RNR2	3	1	MT-ND4	1245	chrM:11004:+	MT-RNR2	5925	chrM:2217:+	INCL_NON_REF_SPLICE	YES	13395	14077	0	0	0.0404	0.0135	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	0	0	0.0539	FALSE	13	19	3	21	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND5--MT-ATP8	3	1	MT-ND5	1969	chrM:13305:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4581	463	0	0.01	0.0404	0.0135	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	0	0.01	0.0539	FALSE	43	37	8	105	0	FALSE	ACH-000705
LC1F_LUNG	RP11-444D3.1--SOX5	2	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0.0673	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LC1F_LUNG	1	1	0.0942	TRUE	274	363	69	150	0	FALSE	ACH-000705
LC1F_LUNG	IGF2BP2--LPP	3	0	IGF2BP2	2393	chr3:185540941:-	LPP	43531	chr3:188326949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+	LC1F_LUNG	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	LINC00276--AC011897.2	3	0	LINC00276	8559	chr2:13981689:-	AC011897.2	13849	chr2:14756552:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	LINC00276->chr2:13850656-14541087:-,long_intergenic_non-protein_coding_RNA_276,AC011897.2->chr2:14756552-14770316:+	LC1F_LUNG	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	1	1	0.0404	FALSE	231	204	14	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	1	1	0.0404	FALSE	230	198	14	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LC1F_LUNG	1	1	0.0404	FALSE	231	217	16	283	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-RNR2	3	0	MT-ND4	1222	chrM:10981:+	MT-RNR2	5968	chrM:2260:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	1	1	0.0404	FALSE	13	19	3	21	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND4--MT-RNR2	3	0	MT-ND4	1209	chrM:10968:+	MT-RNR2	5956	chrM:2248:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LC1F_LUNG	1	1	0.0404	FALSE	13	19	3	21	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND5--MT-ND6	3	0	MT-ND5	2863	chrM:14199:+	MT-ND6	6325	chrM:14161:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	LC1F_LUNG	1	1	0.0404	FALSE	26	124	4	93	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LC1F_LUNG	1	1	0.0404	FALSE	499	1288	110	792	0	FALSE	ACH-000705
LC1F_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LC1F_LUNG	1	1	0.0404	FALSE	499	1288	110	792	0	FALSE	ACH-000705
LC1F_LUNG	STON2--RP11-299L17.3	1	7	STON2	1145	chr14:81902665:-	RP11-299L17.3	23146	chr14:81908786:-	ONLY_REF_SPLICE	YES	22	0	0.27	1	0.0135	0.0942	LOCAL_REARRANGEMENT:-:[5522],STON2->chr14:81727000-81902809:-,stonin_2,RP11-299L17.3->chr14:81908331-81916501:-	LC1F_LUNG	0.27	1	0.1077	TRUE	0	0	0	2	0	TRUE	ACH-000705
LC1F_LUNG	TBL1XR1--YEATS2	2	3	TBL1XR1	2134	chr3:176914128:-	YEATS2	49609	chr3:183490093:+	ONLY_REF_SPLICE	YES	16	62	0.24	0.07	0.0269	0.0404	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+	LC1F_LUNG	0.07	0.24	0.0673	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	RP11-1L12.3--SLC5A12	2	2	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0269	0.0269	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	LC1F_LUNG	0.57	1	0.0538	TRUE	3	101	0	60	0	FALSE	ACH-000705
LC1F_LUNG	ITSN1--EVA1C	1	5	ITSN1	24684	chr21:35169912:+	EVA1C	70496	chr21:33805459:+	ONLY_REF_SPLICE	YES	11	12	0.35	0.33	0.0135	0.0673	ITSN1->chr21:35014706-35272165:+,intersectin_1,EVA1C->chr21:33784314-33887707:+,eva-1_homolog_C_(C._elegans)	LC1F_LUNG	0.33	0.35	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	LRP1B--FYB	2	1	LRP1B	5706	chr2:142237965:-	FYB	118227	chr5:39153706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0.0135	LRP1B->ArcherDX_panel,FoundationOne_panel,LDL_receptor_related_protein_1B,chr2:140988992-142889270:-,FYB->FYN_binding_protein,chr5:39105338-39274630:-	LC1F_LUNG	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	NEK6--AFP	2	1	NEK6	1756	chr9:127020640:+	AFP	38419	chr4:74320953:+	ONLY_REF_SPLICE	NO	0	2	1	0.6	0.0269	0.0135	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,AFP->alpha_fetoprotein,chr4:74296855-74321891:+	LC1F_LUNG	0.6	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	RNF19A--PABPC1	2	1	RNF19A	10512	chr8:101287181:-	PABPC1	26797	chr8:101727829:-	ONLY_REF_SPLICE	YES	40	2122	0.07	0	0.0269	0.0135	RNF19A->chr8:101269288-101348446:-,ring_finger_protein_19A,_RBR_E3_ubiquitin_protein_ligase,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	LC1F_LUNG	0	0.07	0.0404	FALSE	0	0	0	1	0	FALSE	ACH-000705
LC1F_LUNG	SCARB1--UBC	2	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	LC1F_LUNG	1	1	0.0269	TRUE	55	66	6	101	0	FALSE	ACH-000705
LC1F_LUNG	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LC1F_LUNG	1	1	0.0269	TRUE	62	24	1	171	0	FALSE	ACH-000705
LC1F_LUNG	ERGIC1--GPR98	1	2	ERGIC1	1159	chr5:172261436:+	GPR98	132911	chr5:90368264:+	ONLY_REF_SPLICE	YES	5	30	0.38	0.09	0.0135	0.0269	ERGIC1->chr5:172261278-172379688:+,endoplasmic_reticulum-golgi_intermediate_compartment_1,GPR98->chr5:89825161-90460038:+	LC1F_LUNG	0.09	0.38	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	ABCC5--TNFAIP2	1	1	ABCC5	2849	chr3:183732052:-	TNFAIP2	49286	chr14:103599087:+	ONLY_REF_SPLICE	YES	281	84	0.01	0.02	0.0135	0.0135	ABCC5->ATP_binding_cassette_subfamily_C_member_5,chr3:183637722-183735803:-,TNFAIP2->TNF_alpha_induced_protein_2,chr14:103589779-103603776:+	LC1F_LUNG	0.01	0.02	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000705
LC1F_LUNG	AUTS2--CERS6	1	1	AUTS2	5415	chr7:69364484:+	CERS6	48959	chr2:169626020:+	ONLY_REF_SPLICE	NO	6	62	0.25	0.03	0.0135	0.0135	AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+,CERS6->ceramide_synthase_6,chr2:169312372-169631644:+	LC1F_LUNG	0.03	0.25	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000705
LC1F_LUNG	CMSS1--TBC1D23	1	1	CMSS1	1210	chr3:99536887:+	TBC1D23	26407	chr3:99998493:+	ONLY_REF_SPLICE	YES	231	2	0.01	0.5	0.0135	0.0135	NEIGHBORS[82397],CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast),TBC1D23->TBC1_domain_family_member_23,chr3:99979844-100044095:+	LC1F_LUNG	0.01	0.5	0.027	FALSE	0	2	0	2	0	FALSE	ACH-000705
LC1F_LUNG	FAM160A1--PET112	1	1	FAM160A1	3441	chr4:152375960:+	PET112	31592	chr4:152640690:-	ONLY_REF_SPLICE	YES	9	62	0.18	0.03	0.0135	0.0135	LOCAL_INVERSION:+:-:[6872],FAM160A1->chr4:152330368-152584784:+,family_with_sequence_similarity_160_member_A1,PET112->chr4:152591656-152682175:-	LC1F_LUNG	0.03	0.18	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000705
LC1F_LUNG	LPP--TBL1XR1	1	1	LPP	13531	chr3:188242575:+	TBL1XR1	58299	chr3:176816329:-	ONLY_REF_SPLICE	YES	29	34	0.06	0.06	0.0135	0.0135	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1	LC1F_LUNG	0.06	0.06	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000705
LC1F_LUNG	MIR205HG--C9orf3	1	1	MIR205HG	2657	chr1:209603821:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	103	174	0.02	0.01	0.0135	0.0135	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	LC1F_LUNG	0.01	0.02	0.027	FALSE	7	55	2	6	0	FALSE	ACH-000705
LC1F_LUNG	RCC1--XPO1	1	1	RCC1	2916	chr1:28835413:+	XPO1	44405	chr2:61708416:-	ONLY_REF_SPLICE	NO	11	490	0.15	0	0.0135	0.0135	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	LC1F_LUNG	0	0.15	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000705
LC1F_LUNG	RP11-385J1.2--KCNMB2	1	1	RP11-385J1.2	1112	chr3:178578082:-	KCNMB2	24210	chr3:178543376:+	ONLY_REF_SPLICE	YES	10	0	0.17	1	0.0135	0.0135	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	LC1F_LUNG	0.17	1	0.027	TRUE	0	0	0	2	0	TRUE	ACH-000705
LC1F_LUNG	SLCO5A1--RP11-321L2.2	1	1	SLCO5A1	4298	chr8:70744002:-	RP11-321L2.2	24348	chr9:23895604:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0135	0.0135	SLCO5A1->chr8:70579282-70747299:-,solute_carrier_organic_anion_transporter_family_member_5A1,RP11-321L2.2->chr9:23894988-23898052:-	LC1F_LUNG	0.67	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	ST7L--FSCN3	1	1	ST7L	6176	chr1:113153463:-	FSCN3	37633	chr7:127240248:+	ONLY_REF_SPLICE	YES	27	0	0.07	1	0.0135	0.0135	ST7L->chr1:113066140-113163447:-,suppression_of_tumorigenicity_7_like,FSCN3->chr7:127231463-127242198:+,fascin_actin-bundling_protein_3	LC1F_LUNG	0.07	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000705
LC1F_LUNG	TRAPPC12--TSSC1	1	1	TRAPPC12	3253	chr2:3392441:+	TSSC1	34011	chr2:3341920:-	ONLY_REF_SPLICE	YES	45	135	0.04	0.01	0.0135	0.0135	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[1793],TRAPPC12->chr2:3383446-3488865:+,trafficking_protein_particle_complex_12,TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1	LC1F_LUNG	0.01	0.04	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000705
TC71_BONE	EWSR1--FLI1	298	139	EWSR1	11554	chr22:29683123:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	402	0	0.52	1	3.5247	1.6441	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	TC71_BONE	0.52	1	5.1688	TRUE	0	0	0	6	0	TRUE	ACH-000424
TC71_BONE	KANSL1--ARL17B	116	45	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	37	81	0.81	0.67	1.372	0.5323	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	TC71_BONE	0.67	0.81	1.9043	TRUE	181	1564	124	196	0	FALSE	ACH-000424
TC71_BONE	TIMM23B--LINC00843	113	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3366	0.343	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TC71_BONE	1	1	1.6796	TRUE	508	994	45	981	0	FALSE	ACH-000424
TC71_BONE	LINC00355--DNAJC3	74	49	LINC00355	1770	chr13:64649375:-	DNAJC3	15327	chr13:96409898:+	ONLY_REF_SPLICE	YES	56	15	0.69	0.89	0.8753	0.5796	LINC00355->chr13:64560504-64650144:-,long_intergenic_non-protein_coding_RNA_355,DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+	TC71_BONE	0.69	0.89	1.4549	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	LINC00355--DNAJC3	65	60	LINC00355	2961	chr13:64608480:-	DNAJC3	15327	chr13:96409898:+	ONLY_REF_SPLICE	YES	30	15	0.81	0.89	0.7688	0.7097	LINC00355->chr13:64560504-64650144:-,long_intergenic_non-protein_coding_RNA_355,DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+	TC71_BONE	0.81	0.89	1.4785	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	TIMM23--RP11-464F9.1	59	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	348	3	0.15	0.95	0.6978	0.0355	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TC71_BONE	0.15	0.95	0.7333	TRUE	519	3926	326	965	0	FALSE	ACH-000424
TC71_BONE	CTD-2020K17.1--MRPL13	43	20	CTD-2020K17.1	2955	chr17:43297635:-	MRPL13	13942	chr8:121432178:-	ONLY_REF_SPLICE	YES	22	1286	0.74	0.05	0.5086	0.2366	CTD-2020K17.1->chr17:43268298-43299589:-,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	TC71_BONE	0.05	0.74	0.7452	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	MRPL13--MTBP	39	3	MRPL13	5821	chr8:121432092:-	MTBP	37830	chr8:121528165:+	ONLY_REF_SPLICE	YES	1264	58	0.03	0.42	0.4613	0.0355	NEIGHBORS_OVERLAP:-:+:[2],MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13,MTBP->MDM2_binding_protein,chr8:121457640-121554373:+	TC71_BONE	0.03	0.42	0.4968	FALSE	0	0	0	1	0	FALSE	ACH-000424
TC71_BONE	ZNF654--HMGB2	39	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4613	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TC71_BONE	1	1	0.4613	TRUE	0	0	0	518	0	FALSE	ACH-000424
TC71_BONE	ACACB--FBXO21	29	8	ACACB	48424	chr12:109694041:+	FBXO21	70585	chr12:117603422:-	ONLY_REF_SPLICE	YES	11	36	0.77	0.51	0.343	0.0946	{Klijn_CCL:Sarcomatoid=1},ACACB->acetyl-CoA_carboxylase_beta,chr12:109554400-109706031:+,FBXO21->F-box_protein_21,chr12:117581146-117628336:-	TC71_BONE	0.51	0.77	0.4376	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	RP11-152P17.2--RP11-649G15.2	26	20	RP11-152P17.2	3511	chr8:106939879:-	RP11-649G15.2	17753	chr8:107535061:-	ONLY_REF_SPLICE	YES	40	0	0.53	1	0.3075	0.2366	RP11-152P17.2->chr8:106792474-107072752:-,RP11-649G15.2->chr8:107532702-107669776:-	TC71_BONE	0.53	1	0.5441	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	NPM1P24--SET	30	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3548	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TC71_BONE	1	1	0.3548	TRUE	0	0	0	434	0	FALSE	ACH-000424
TC71_BONE	RP11-680G10.1--GSE1	28	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	23	1	0.58	0.3312	0.0473	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TC71_BONE	0.58	1	0.3785	TRUE	465	1949	224	605	0	FALSE	ACH-000424
TC71_BONE	CTD-2020K17.1--MRPL13	14	27	CTD-2020K17.1	4275	chr17:43296315:-	MRPL13	13942	chr8:121432178:-	INCL_NON_REF_SPLICE	YES	4	1286	0.91	0.03	0.1656	0.3194	CTD-2020K17.1->chr17:43268298-43299589:-,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	TC71_BONE	0.03	0.91	0.485	TRUE	0	0	0	1	0	FALSE	ACH-000424
TC71_BONE	RP11-680G10.1--GSE1	19	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.71	0.2247	0.071	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TC71_BONE	0.71	1	0.2957	TRUE	458	1351	185	561	0	FALSE	ACH-000424
TC71_BONE	EWSR1--FLI1	1	74	EWSR1	11554	chr22:29683123:+	FLI1	39468	chr11:128677075:+	ONLY_REF_SPLICE	YES	402	3	0.16	0.96	0.0118	0.8753	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	TC71_BONE	0.16	0.96	0.8871	TRUE	0	0	0	4	0	TRUE	ACH-000424
TC71_BONE	SMG5--CCT3	17	9	SMG5	15322	chr1:156228796:-	CCT3	28468	chr1:156304709:-	ONLY_REF_SPLICE	YES	191	2030	0.12	0.01	0.2011	0.1065	{Klijn_CCL:Sarcomatoid=1},LOCAL_REARRANGEMENT:-:[26139],SMG5->SMG5_nonsense_mediated_mRNA_decay_factor,chr1:156219015-156252620:-,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	TC71_BONE	0.01	0.12	0.3076	TRUE	0	0	0	1	0	FALSE	ACH-000424
TC71_BONE	C15orf57--CBX3	12	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	33	26	0.43	0.49	0.1419	0.1538	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TC71_BONE	0.43	0.49	0.2957	TRUE	267	562	48	632	0	FALSE	ACH-000424
TC71_BONE	SMG5--CCT3	13	9	SMG5	15322	chr1:156228796:-	CCT3	27498	chr1:156305679:-	ONLY_REF_SPLICE	YES	191	585	0.1	0.04	0.1538	0.1065	{Klijn_CCL:Sarcomatoid=1},LOCAL_REARRANGEMENT:-:[26139],SMG5->SMG5_nonsense_mediated_mRNA_decay_factor,chr1:156219015-156252620:-,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	TC71_BONE	0.04	0.1	0.2603	TRUE	0	0	0	1	0	FALSE	ACH-000424
TC71_BONE	HSP90AB1--MT-RNR2	15	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1774	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TC71_BONE	1	1	0.1774	FALSE	13	9	0	364	0	FALSE	ACH-000424
TC71_BONE	RP11-152P17.2--RP11-649G15.2	13	8	RP11-152P17.2	1144	chr8:107072609:-	RP11-649G15.2	17753	chr8:107535061:-	ONLY_REF_SPLICE	YES	24	0	0.47	1	0.1538	0.0946	RP11-152P17.2->chr8:106792474-107072752:-,RP11-649G15.2->chr8:107532702-107669776:-	TC71_BONE	0.47	1	0.2484	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	EWSR1--FLI1	1	48	EWSR1	11554	chr22:29683123:+	FLI1	40528	chr11:128679052:+	ONLY_REF_SPLICE	YES	402	34	0.11	0.59	0.0118	0.5677	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	TC71_BONE	0.11	0.59	0.5795	TRUE	0	0	0	5	0	TRUE	ACH-000424
TC71_BONE	YES1--RP11-672L10.3	11	8	YES1	1433	chr18:812115:-	RP11-672L10.3	21545	chr18:894696:-	ONLY_REF_SPLICE	YES	106	0	0.15	1	0.1301	0.0946	LOCAL_REARRANGEMENT:-:[81889],YES1->Oncogene{Bushman},YES_proto-oncogene_1,_Src_family_tyrosine_kinase,chr18:721588-812547:-,RP11-672L10.3->chr18:894436-907681:-	TC71_BONE	0.15	1	0.2247	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	PTBP2--ELAVL4	11	5	PTBP2	5162	chr1:97217056:+	ELAVL4	36655	chr1:50642761:+	ONLY_REF_SPLICE	YES	49	1	0.25	0.94	0.1301	0.0591	HGNC_GENEFAM,PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,ELAVL4->ELAV_like_neuron-specific_RNA_binding_protein_4,chr1:50513686-50669458:+	TC71_BONE	0.25	0.94	0.1892	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	MTSS1--KB-1562D12.1	9	1	MTSS1	4065	chr8:125711767:-	KB-1562D12.1	30827	chr8:102473845:-	ONLY_REF_SPLICE	YES	41	0	0.2	1	0.1065	0.0118	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,KB-1562D12.1->chr8:102473405-102504727:-	TC71_BONE	0.2	1	0.1183	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	TBL1XR1--RP11-708B6.2	9	1	TBL1XR1	5415	chr3:176816254:-	RP11-708B6.2	34615	chr11:109383451:-	ONLY_REF_SPLICE	YES	24	0	0.29	1	0.1065	0.0118	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-708B6.2->chr11:109225812-109454633:-	TC71_BONE	0.29	1	0.1183	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	AL136376.1--RPS28	9	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1065	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	TC71_BONE	1	1	0.1065	TRUE	0	0	0	12	0	TRUE	ACH-000424
TC71_BONE	DNAJC3--LINC00355	8	3	DNAJC3	4510	chr13:96377506:+	LINC00355	23085	chr13:64576542:-	ONLY_REF_SPLICE	YES	16	12	0.41	0.48	0.0946	0.0355	DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+,LINC00355->chr13:64560504-64650144:-,long_intergenic_non-protein_coding_RNA_355	TC71_BONE	0.41	0.48	0.1301	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	C15orf57--CBX3	7	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	32	28	0.29	0.32	0.0828	0.071	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TC71_BONE	0.29	0.32	0.1538	TRUE	267	562	48	632	0	FALSE	ACH-000424
TC71_BONE	HSP90AB1--MT-RNR2	8	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3411	0	0	1	0.0946	0.0118	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TC71_BONE	0	1	0.1064	FALSE	13	9	0	364	0	FALSE	ACH-000424
TC71_BONE	DNAJC3--LINC00355	6	8	DNAJC3	4510	chr13:96377506:+	LINC00355	22026	chr13:64577601:-	INCL_NON_REF_SPLICE	YES	16	28	0.47	0.33	0.071	0.0946	DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+,LINC00355->chr13:64560504-64650144:-,long_intergenic_non-protein_coding_RNA_355	TC71_BONE	0.33	0.47	0.1656	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	RP11-123O10.4--GRIP1	8	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0946	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TC71_BONE	1	1	0.0946	FALSE	416	2512	207	587	0	FALSE	ACH-000424
TC71_BONE	RP11-152P17.2--RP11-649G15.2	2	20	RP11-152P17.2	3520	chr8:106939870:-	RP11-649G15.2	17753	chr8:107535061:-	ONLY_REF_SPLICE	YES	41	0	0.35	1	0.0237	0.2366	RP11-152P17.2->chr8:106792474-107072752:-,RP11-649G15.2->chr8:107532702-107669776:-	TC71_BONE	0.35	1	0.2603	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	MAP1LC3B--MCHR1	6	3	MAP1LC3B	4437	chr16:87426073:+	MCHR1	15966	chr22:41076953:+	ONLY_REF_SPLICE	YES	52	3	0.15	0.75	0.071	0.0355	MAP1LC3B->chr16:87417601-87438385:+,microtubule_associated_protein_1_light_chain_3_beta,MCHR1->chr22:41074754-41078818:+,melanin_concentrating_hormone_receptor_1	TC71_BONE	0.15	0.75	0.1065	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	JSRP1--RPS28	6	1	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.071	0.0118	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	TC71_BONE	1	1	0.0828	TRUE	0	1	0	84	1	FALSE	ACH-000424
TC71_BONE	CRELD2--FBLN1	6	0	CRELD2	5500	chr22:50316355:+	FBLN1	26820	chr22:45938035:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.071	0	CRELD2->chr22:50311815-50321188:+,cysteine_rich_with_EGF_like_domains_2,FBLN1->Oncogene{Bushman},chr22:45898118-45997015:+,fibulin_1	TC71_BONE	1	1	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	DNAJC3--LINC00355	4	8	DNAJC3	4510	chr13:96377506:+	LINC00355	22029	chr13:64577598:-	ONLY_REF_SPLICE	YES	16	26	0.43	0.32	0.0473	0.0946	DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+,LINC00355->chr13:64560504-64650144:-,long_intergenic_non-protein_coding_RNA_355	TC71_BONE	0.32	0.43	0.1419	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	RCC1--NFYB	6	0	RCC1	2175	chr1:28834672:+	NFYB	20792	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.071	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	TC71_BONE	1	1	0.071	TRUE	0	0	0	2	0	TRUE	ACH-000424
TC71_BONE	UBE2B--RP11-950K24.2	6	0	UBE2B	1461	chr5:133707330:+	RP11-950K24.2	13894	chr5:118463913:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.071	0	UBE2B->chr5:133706870-133727683:+,ubiquitin_conjugating_enzyme_E2_B,RP11-950K24.2->chr5:118462477-118464139:-	TC71_BONE	1	1	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	LINC01036--LINC01037	5	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0591	0.0118	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	TC71_BONE	1	1	0.0709	FALSE	0	24	0	62	0	FALSE	ACH-000424
TC71_BONE	ZHX2--RP11-96B2.1	5	1	ZHX2	1553	chr8:123794185:+	RP11-96B2.1	12906	chr8:123499705:-	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0591	0.0118	ZHX2->chr8:123793633-123986750:+,zinc_fingers_and_homeoboxes_2,RP11-96B2.1->chr8:123497754-123502054:-	TC71_BONE	0.75	1	0.0709	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	LINC00355--DNAJC3	2	12	LINC00355	1770	chr13:64649375:-	DNAJC3	16480	chr13:96412294:+	ONLY_REF_SPLICE	YES	56	44	0.2	0.24	0.0237	0.1419	LINC00355->chr13:64560504-64650144:-,long_intergenic_non-protein_coding_RNA_355,DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+	TC71_BONE	0.2	0.24	0.1656	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	MT-ATP6--MT-CO1	4	2	MT-ATP6	1244	chrM:8770:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	11167	13566	0	0	0.0473	0.0237	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TC71_BONE	0	0	0.071	FALSE	183	104	9	328	0	FALSE	ACH-000424
TC71_BONE	JSRP1--RPS28	4	1	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0.0118	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	TC71_BONE	1	1	0.0591	TRUE	0	1	0	84	1	FALSE	ACH-000424
TC71_BONE	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	28	1279	0.15	0	0.0473	0.0118	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TC71_BONE	0	0.15	0.0591	FALSE	0	0	0	434	0	FALSE	ACH-000424
TC71_BONE	TRPS1--CSMD3	4	1	TRPS1	17076	chr8:116430558:-	CSMD3	39402	chr8:114111192:-	ONLY_REF_SPLICE	YES	1	7	0.83	0.42	0.0473	0.0118	TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,CSMD3->CUB_and_Sushi_multiple_domains_3,Oncogene{Bushman},chr8:113235157-114449328:-	TC71_BONE	0.42	0.83	0.0591	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	AC027119.1--AC026167.1	3	4	AC027119.1	2872	chr3:6165860:+	AC026167.1	6915	chr3:6400588:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.0473	NEIGHBORS[24364],AC027119.1->chr3:6004529-6165807:+,AC026167.1->chr3:6190171-6407572:+	TC71_BONE	1	1	0.0828	FALSE	0	0	0	2	0	FALSE	ACH-000424
TC71_BONE	ANP32B--SEPT7	4	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	TC71_BONE	1	1	0.0473	TRUE	1	1	0	18	1	TRUE	ACH-000424
TC71_BONE	BSG--PTBP1	4	0	BSG	2405	chr19:572701:+	PTBP1	15804	chr19:799413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0473	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	TC71_BONE	1	1	0.0473	TRUE	0	0	0	2	0	TRUE	ACH-000424
TC71_BONE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TC71_BONE	1	1	0.0473	FALSE	183	104	9	328	0	FALSE	ACH-000424
TC71_BONE	RP13-16H11.2--GNAS	4	0	RP13-16H11.2	2132	chr10:26957336:-	GNAS	22156	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0473	0	RP13-16H11.2->chr10:26953135-26965088:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TC71_BONE	1	1	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	UBQLN1--SLC28A3	4	0	UBQLN1	7108	chr9:86292642:-	SLC28A3	35999	chr9:86894988:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0473	0	UBQLN1->chr9:86274878-86323118:-,ubiquilin_1,SLC28A3->chr9:86890372-86955672:-,solute_carrier_family_28_member_3	TC71_BONE	1	1	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	KANSL1--ARL17B	1	11	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	37	66	0.24	0.15	0.0118	0.1301	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	TC71_BONE	0.15	0.24	0.1419	TRUE	20	16	0	28	0	FALSE	ACH-000424
TC71_BONE	LINC00355--DNAJC3	3	1	LINC00355	1770	chr13:64649375:-	DNAJC3	19550	chr13:96438193:+	ONLY_REF_SPLICE	YES	56	77	0.07	0.05	0.0355	0.0118	LINC00355->chr13:64560504-64650144:-,long_intergenic_non-protein_coding_RNA_355,DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+	TC71_BONE	0.05	0.07	0.0473	TRUE	0	0	0	1	0	FALSE	ACH-000424
TC71_BONE	AL136376.1--RPS28	3	0	AL136376.1	2362	chr1:116915870:-	RPS28	5709	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	TC71_BONE	1	1	0.0355	TRUE	0	0	0	12	0	TRUE	ACH-000424
TC71_BONE	APP--MT-ND2	3	0	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TC71_BONE	1	1	0.0355	FALSE	0	1	0	51	0	FALSE	ACH-000424
TC71_BONE	LINC00355--DNAJC3	2	4	LINC00355	1770	chr13:64649375:-	DNAJC3	18239	chr13:96415897:+	ONLY_REF_SPLICE	YES	56	91	0.1	0.06	0.0237	0.0473	LINC00355->chr13:64560504-64650144:-,long_intergenic_non-protein_coding_RNA_355,DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+	TC71_BONE	0.06	0.1	0.071	TRUE	0	0	0	1	0	FALSE	ACH-000424
TC71_BONE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TC71_BONE	1	1	0.0355	FALSE	183	104	9	328	0	FALSE	ACH-000424
TC71_BONE	PABPC1--RPS28	3	0	PABPC1	2022	chr8:101734016:-	RPS28	18700	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	TC71_BONE	1	1	0.0355	TRUE	0	0	0	6	0	TRUE	ACH-000424
TC71_BONE	RERE--MT-ND4	3	0	RERE	34132	chr1:8416251:-	MT-ND4	41393	chrM:11226:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	TC71_BONE	1	1	0.0355	FALSE	1	0	0	5	0	FALSE	ACH-000424
TC71_BONE	AC027119.1--AC026167.1	2	3	AC027119.1	1674	chr3:6005202:+	AC026167.1	6915	chr3:6400588:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0237	0.0355	NEIGHBORS[24364],AC027119.1->chr3:6004529-6165807:+,AC026167.1->chr3:6190171-6407572:+	TC71_BONE	0.71	1	0.0592	FALSE	1	37	1	9	0	FALSE	ACH-000424
TC71_BONE	SMG5--CCT3	2	3	SMG5	15322	chr1:156228796:-	CCT3	29674	chr1:156303434:-	ONLY_REF_SPLICE	YES	191	1726	0.03	0	0.0237	0.0355	{Klijn_CCL:Sarcomatoid=1},LOCAL_REARRANGEMENT:-:[26139],SMG5->SMG5_nonsense_mediated_mRNA_decay_factor,chr1:156219015-156252620:-,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	TC71_BONE	0	0.03	0.0592	FALSE	0	0	0	1	0	FALSE	ACH-000424
TC71_BONE	CPSF6--NR0B1	2	1	CPSF6	11046	chr12:69656342:+	NR0B1	23329	chrX:30322940:-	ONLY_REF_SPLICE	YES	205	246	0.01	0.01	0.0237	0.0118	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,NR0B1->chrX:30322323-30327715:-,nuclear_receptor_subfamily_0_group_B_member_1	TC71_BONE	0.01	0.01	0.0355	FALSE	0	1	0	8	0	FALSE	ACH-000424
TC71_BONE	CSMD3--MTBP	2	1	CSMD3	28553	chr8:113668383:-	MTBP	96197	chr8:121463243:+	ONLY_REF_SPLICE	YES	0	230	1	0.01	0.0237	0.0118	CSMD3->CUB_and_Sushi_multiple_domains_3,Oncogene{Bushman},chr8:113235157-114449328:-,MTBP->MDM2_binding_protein,chr8:121457640-121554373:+	TC71_BONE	0.01	1	0.0355	FALSE	0	0	0	1	0	FALSE	ACH-000424
TC71_BONE	FGF14-IT1--FGF14	2	1	FGF14-IT1	3717	chr13:103018795:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0237	0.0118	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	TC71_BONE	0.75	1	0.0355	TRUE	80	58	2	10	0	FALSE	ACH-000424
TC71_BONE	TBL1XR1--RP11-708B6.2	2	1	TBL1XR1	4339	chr3:176849151:-	RP11-708B6.2	34615	chr11:109383451:-	ONLY_REF_SPLICE	YES	20	0	0.13	1	0.0237	0.0118	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-708B6.2->chr11:109225812-109454633:-	TC71_BONE	0.13	1	0.0355	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	AC016907.3--ALK	2	0	AC016907.3	7645	chr2:30342634:-	ALK	15793	chr2:29940563:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_FI:{Brain=[count:14=pct:2.1],Testis=[count:6=pct:5.7],Adrenal_Gland=[count:1=pct:1.2],Nerve=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Prostate=[count:1=pct:1.6]},AC016907.3->chr2:30273932-30366670:-,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	TC71_BONE	1	1	0.0237	TRUE	22	9	2	3	0	FALSE	ACH-000424
TC71_BONE	CTD-2017D11.1--URI1	2	0	CTD-2017D11.1	2273	chr19:24229081:+	URI1	20745	chr19:30476130:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	CTD-2017D11.1->chr19:24216247-24249711:+,URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+	TC71_BONE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	FAM69A--SCP2	2	0	FAM69A	1125	chr1:93426933:-	SCP2	16139	chr1:53427175:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	FAM69A->chr1:93307724-93427057:-,family_with_sequence_similarity_69_member_A,SCP2->chr1:53392901-53517375:+,sterol_carrier_protein_2	TC71_BONE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	RCC1--HNRNPR	2	0	RCC1	2175	chr1:28834672:+	HNRNPR	20007	chr1:23667510:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R	TC71_BONE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	STARD13--LHFP	2	0	STARD13	6682	chr13:33779956:-	LHFP	34887	chr13:39952663:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-,LHFP->Oncogene{Bushman},chr13:39917029-40177665:-,lipoma_HMGIC_fusion_partner	TC71_BONE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	TC71_BONE	1	1	0.0237	FALSE	28	14	1	23	0	FALSE	ACH-000424
TC71_BONE	YWHAE--CRK	2	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	TC71_BONE	1	1	0.0237	TRUE	6	50	7	115	0	FALSE	ACH-000424
TC71_BONE	DNAJC3--LINC00355	1	3	DNAJC3	4510	chr13:96377506:+	LINC00355	24110	chr13:64564333:-	ONLY_REF_SPLICE	YES	16	9	0.2	0.31	0.0118	0.0355	DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+,LINC00355->chr13:64560504-64650144:-,long_intergenic_non-protein_coding_RNA_355	TC71_BONE	0.2	0.31	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	AC027119.1--AC026167.1	1	2	AC027119.1	1674	chr3:6005202:+	AC026167.1	7962	chr3:6407416:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0118	0.0237	NEIGHBORS[24364],AC027119.1->chr3:6004529-6165807:+,AC026167.1->chr3:6190171-6407572:+	TC71_BONE	0.6	1	0.0355	FALSE	0	10	0	3	0	FALSE	ACH-000424
TC71_BONE	DNAJC24--ARL14EP	1	2	DNAJC24	2020	chr11:31392406:+	ARL14EP	25368	chr11:30352433:+	ONLY_REF_SPLICE	YES	94	25	0.03	0.11	0.0118	0.0237	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,ARL14EP->ADP_ribosylation_factor_like_GTPase_14_effector_protein,chr11:30344598-30359774:+	TC71_BONE	0.03	0.11	0.0355	TRUE	0	1	0	2	1	FALSE	ACH-000424
TC71_BONE	DSCR4--KCNJ6	1	2	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0118	0.0237	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	TC71_BONE	0.75	1	0.0355	FALSE	0	24	0	27	0	FALSE	ACH-000424
TC71_BONE	TAF2--FER1L6	1	2	TAF2	12435	chr8:120803564:-	FER1L6	36896	chr8:124968232:+	ONLY_REF_SPLICE	YES	115	0	0.03	1	0.0118	0.0237	TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-,FER1L6->chr8:124864227-125132302:+,fer-1_like_family_member_6	TC71_BONE	0.03	1	0.0355	TRUE	0	0	0	1	0	FALSE	ACH-000424
TC71_BONE	TAF2--FER1L6	1	2	TAF2	10884	chr8:120805606:-	FER1L6	36896	chr8:124968232:+	ONLY_REF_SPLICE	NO	109	0	0.03	1	0.0118	0.0237	TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-,FER1L6->chr8:124864227-125132302:+,fer-1_like_family_member_6	TC71_BONE	0.03	1	0.0355	TRUE	0	0	0	1	0	FALSE	ACH-000424
TC71_BONE	CPSF6--AKAP7	1	1	CPSF6	11046	chr12:69656342:+	AKAP7	35880	chr6:131603539:+	ONLY_REF_SPLICE	NO	205	179	0.01	0.01	0.0118	0.0118	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,AKAP7->A-kinase_anchoring_protein_7,chr6:131456806-131604675:+	TC71_BONE	0.01	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000424
TC71_BONE	CPSF6--RAD51C	1	1	CPSF6	11046	chr12:69656342:+	RAD51C	22133	chr17:56772292:+	ONLY_REF_SPLICE	NO	205	193	0.01	0.01	0.0118	0.0118	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+	TC71_BONE	0.01	0.01	0.0236	FALSE	0	1	0	1	0	FALSE	ACH-000424
TC71_BONE	FGF14-IT1--FGF14	1	1	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0118	0.0118	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	TC71_BONE	0.67	1	0.0236	TRUE	71	201	23	28	0	FALSE	ACH-000424
TC71_BONE	HEATR3--SLMAP	1	1	HEATR3	4419	chr16:50104201:+	SLMAP	52150	chr3:57911572:+	ONLY_REF_SPLICE	YES	62	23	0.03	0.08	0.0118	0.0118	HEATR3->HEAT_repeat_containing_3,chr16:50099852-50140298:+,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	TC71_BONE	0.03	0.08	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000424
TC71_BONE	LINC01036--LINC01037	1	1	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0118	0.0118	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	TC71_BONE	1	1	0.0236	FALSE	0	26	0	50	0	FALSE	ACH-000424
TC71_BONE	MRVI1-AS1--RNF141	1	1	MRVI1-AS1	1271	chr11:10563089:+	RNF141	12338	chr11:10555752:-	ONLY_REF_SPLICE	YES	10	19	0.17	0.1	0.0118	0.0118	LOCAL_INVERSION:+:-:[42],MRVI1-AS1->MRVI1_antisense_RNA_1,chr11:10562819-10621479:+,RNF141->chr11:10533225-10562777:-,ring_finger_protein_141	TC71_BONE	0.1	0.17	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	NET1--HFM1	1	1	NET1	1270	chr10:5454783:+	HFM1	45990	chr1:91733412:-	ONLY_REF_SPLICE	YES	62	0	0.03	1	0.0118	0.0118	NET1->Oncogene{Bushman},chr10:5454514-5500426:+,neuroepithelial_cell_transforming_1,HFM1->HFM1,_ATP-dependent_DNA_helicase_homolog,chr1:91726323-91870426:-	TC71_BONE	0.03	1	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000424
TC71_BONE	PVT1--MYC	1	1	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	139	540	0.01	0	0.0118	0.0118	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	TC71_BONE	0	0.01	0.0236	FALSE	3	14	0	24	0	FALSE	ACH-000424
TC71_BONE	TBL1XR1--RP11-708B6.2	1	1	TBL1XR1	1353	chr3:176914909:-	RP11-708B6.2	34615	chr11:109383451:-	ONLY_REF_SPLICE	YES	9	0	0.18	1	0.0118	0.0118	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-708B6.2->chr11:109225812-109454633:-	TC71_BONE	0.18	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	TBL1XR1--RP11-708B6.2	1	1	TBL1XR1	8641	chr3:176797615:-	RP11-708B6.2	34615	chr11:109383451:-	ONLY_REF_SPLICE	YES	31	0	0.06	1	0.0118	0.0118	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-708B6.2->chr11:109225812-109454633:-	TC71_BONE	0.06	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	YES1--RP11-672L10.3	1	1	YES1	1163	chr18:812385:-	RP11-672L10.3	21545	chr18:894696:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0118	0.0118	LOCAL_REARRANGEMENT:-:[81889],YES1->Oncogene{Bushman},YES_proto-oncogene_1,_Src_family_tyrosine_kinase,chr18:721588-812547:-,RP11-672L10.3->chr18:894436-907681:-	TC71_BONE	0.67	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000424
TC71_BONE	ZC3H13--LCP1	1	1	ZC3H13	1828	chr13:46626067:-	LCP1	52003	chr13:46708385:-	ONLY_REF_SPLICE	YES	249	9	0.01	0.18	0.0118	0.0118	LOCAL_REARRANGEMENT:-:[73161],ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13,LCP1->Oncogene{Bushman},chr13:46700055-46786006:-,lymphocyte_cytosolic_protein_1	TC71_BONE	0.01	0.18	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000424
TC71_BONE	ZNF584--BCAT2	1	1	ZNF584	1159	chr19:58913029:+	BCAT2	14447	chr19:49303554:-	ONLY_REF_SPLICE	NO	0	95	1	0.02	0.0118	0.0118	ZNF584->chr19:58912871-58929694:+,zinc_finger_protein_584,BCAT2->branched_chain_amino_acid_transaminase_2,chr19:49298319-49314286:-	TC71_BONE	0.02	1	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000424
BICR31_UPPER_AERODIGESTIVE_TRACT	PACSIN2--ST13	604	124	PACSIN2	1125	chr22:43411027:-	ST13	29753	chr22:41246884:-	ONLY_REF_SPLICE	YES	64	579	0.92	0.56	5.3404	1.0964	PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	BICR31_UPPER_AERODIGESTIVE_TRACT	0.56	0.92	6.4368	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	NPC1--RP11-449H11.1	322	100	NPC1	7653	chr18:21141324:-	RP11-449H11.1	39439	chr16:25098044:-	ONLY_REF_SPLICE	YES	187	3	0.69	0.99	2.847	0.8842	NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-,RP11-449H11.1->chr16:25096913-25122876:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0.69	0.99	3.7312	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MPZL3--MPZL2	135	21	MPZL3	1129	chr11:118122937:-	MPZL2	14404	chr11:118133812:-	ONLY_REF_SPLICE	YES	11	353	0.93	0.31	1.1936	0.1857	GTEx&tcga_normals:5/3694=0.14%,HGNC_GENEFAM,PROTCLUST,{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[1053],MPZL3->chr11:118097409-118123065:-,myelin_protein_zero_like_3,MPZL2->chr11:118124118-118135251:-,myelin_protein_zero_like_2	BICR31_UPPER_AERODIGESTIVE_TRACT	0.31	0.93	1.3793	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	NPC1--RP11-449H11.1	69	12	NPC1	7653	chr18:21141324:-	RP11-449H11.1	40390	chr16:25097093:-	ONLY_REF_SPLICE	YES	187	2	0.3	0.98	0.6101	0.1061	NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-,RP11-449H11.1->chr16:25096913-25122876:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0.3	0.98	0.7162	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	64	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.5659	0.1592	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BICR31_UPPER_AERODIGESTIVE_TRACT	0.99	1	0.7251	TRUE	508	994	45	981	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	57	19	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	19	16	0.8	0.83	0.504	0.168	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0.8	0.83	0.672	TRUE	181	1564	124	196	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	153	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	11	0	0.94	1	0.0796	1.3528	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR31_UPPER_AERODIGESTIVE_TRACT	0.94	1	1.4324	FALSE	344	826	44	306	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	42	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3714	0.0442	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.4156	FALSE	499	1288	110	792	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	153	MT-ND4	1285	chrM:11044:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	13	0	0.92	1	0.0265	1.3528	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR31_UPPER_AERODIGESTIVE_TRACT	0.92	1	1.3793	FALSE	344	827	44	306	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	152	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	7	0	0.96	1	0.0265	1.3439	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR31_UPPER_AERODIGESTIVE_TRACT	0.96	1	1.3704	FALSE	344	826	44	306	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	13	100	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	3672	0	0.03	1	0.1149	0.8842	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR31_UPPER_AERODIGESTIVE_TRACT	0.03	1	0.9991	FALSE	344	827	44	306	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	37	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3271	0.0265	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.3536	FALSE	462	80	0	856	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	UNK--ITGB4	34	8	UNK	1385	chr17:73781065:+	ITGB4	46134	chr17:73750657:+	ONLY_REF_SPLICE	YES	49	374	0.46	0.1	0.3006	0.0707	LOCAL_REARRANGEMENT:+:[26782],UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	BICR31_UPPER_AERODIGESTIVE_TRACT	0.1	0.46	0.3713	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	34	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	156	2	0.19	0.95	0.3006	0.0177	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0.19	0.95	0.3183	TRUE	519	3926	326	965	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	110	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	NO	1	1	0.99	0.99	0.0442	0.9726	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR31_UPPER_AERODIGESTIVE_TRACT	0.99	0.99	1.0168	FALSE	344	821	44	306	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	29	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	34	1	0.52	0.2564	0.0707	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.52	1	0.3271	TRUE	465	1949	224	605	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	ALDOA--KRT17	30	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2653	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.2653	TRUE	0	0	0	10	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	23	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2034	0.0619	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.2653	FALSE	499	1288	110	792	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	23	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2034	0.0354	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.2388	FALSE	416	2512	207	587	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	35	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	9042	0	0.01	1	0.1326	0.3095	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR31_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.4421	FALSE	328	800	43	304	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RAD18--FANCD2	23	3	RAD18	2521	chr3:9000604:-	FANCD2	48892	chr3:10114937:+	ONLY_REF_SPLICE	YES	134	235	0.16	0.1	0.2034	0.0265	{Klijn_CCL:Head-Neck=1},RAD18->RAD18,_E3_ubiquitin_protein_ligase,chr3:8817088-9005457:-,FANCD2->ArcherDX_panel,Fanconi_anemia_complementation_group_D2,FoundationOne_panel,Oncogene{Bushman},chr3:10068098-10143614:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.1	0.16	0.2299	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	PACSIN2--ST13	8	62	PACSIN2	1125	chr22:43411027:-	ST13	30811	chr22:41244373:-	ONLY_REF_SPLICE	YES	64	495	0.52	0.12	0.0707	0.5482	PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	BICR31_UPPER_AERODIGESTIVE_TRACT	0.12	0.52	0.6189	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	76	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	11	0	0.88	1	0.0354	0.672	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR31_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.7074	FALSE	344	826	44	306	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP5-1110E20.1--KRT20	23	0	RP5-1110E20.1	1061	chr17:39007112:+	KRT20	7883	chr17:39037022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2034	0	LOCAL_INVERSION:+:-:[12659],RP5-1110E20.1->chr17:39007052-39019534:+,KRT20->chr17:39032193-39041479:-,keratin_20	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.2034	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	17	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	6	0	0.85	1	0.1503	0.1503	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR31_UPPER_AERODIGESTIVE_TRACT	0.85	1	0.3006	FALSE	499	1288	110	792	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	18	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	20	1	0.57	0.1592	0.0707	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.57	1	0.2299	TRUE	458	1351	185	561	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	20	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	167	0	0.16	1	0.1061	0.1768	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR31_UPPER_AERODIGESTIVE_TRACT	0.16	1	0.2829	FALSE	344	827	44	306	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	46	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.0354	0.4067	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR31_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.4421	FALSE	344	821	44	306	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MPZL3--MPZL2	10	21	MPZL3	1129	chr11:118122937:-	MPZL2	13178	chr11:118135038:-	INCL_NON_REF_SPLICE	YES	11	11	0.74	0.74	0.0884	0.1857	GTEx&tcga_normals:5/3694=0.14%,HGNC_GENEFAM,PROTCLUST,{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[1053],MPZL3->chr11:118097409-118123065:-,myelin_protein_zero_like_3,MPZL2->chr11:118124118-118135251:-,myelin_protein_zero_like_2	BICR31_UPPER_AERODIGESTIVE_TRACT	0.74	0.74	0.2741	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	35	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	296	0	0.12	1	0.0442	0.3095	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR31_UPPER_AERODIGESTIVE_TRACT	0.12	1	0.3537	FALSE	344	827	44	306	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	PACSIN2--ST13	6	30	PACSIN2	1125	chr22:43411027:-	ST13	31887	chr22:41240913:-	ONLY_REF_SPLICE	YES	64	413	0.36	0.08	0.0531	0.2653	PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	BICR31_UPPER_AERODIGESTIVE_TRACT	0.08	0.36	0.3184	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	35	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	11	0	0.78	1	0.0354	0.3095	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR31_UPPER_AERODIGESTIVE_TRACT	0.78	1	0.3449	FALSE	344	826	44	306	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	18	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	12	0	0.68	1	0.0707	0.1592	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR31_UPPER_AERODIGESTIVE_TRACT	0.68	1	0.2299	FALSE	344	826	44	306	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	12	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1061	0.0177	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.1238	FALSE	462	80	0	856	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	12	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	4835	chrM:6057:+	INCL_NON_REF_SPLICE	YES	8211	8897	0	0	0.1061	0.0088	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0	0.1149	FALSE	183	97	9	327	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-CO1--KRT6A	12	0	MT-CO1	1591	chrM:6494:+	KRT6A	5561	chr12:52887023:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1061	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.1061	FALSE	7	19	2	8	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	8	15	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0707	0.1326	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.2033	FALSE	499	1288	110	792	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	OSBPL1A--ROCK1	10	4	OSBPL1A	2434	chr18:21957377:-	ROCK1	64768	chr18:18559965:-	ONLY_REF_SPLICE	YES	60	44	0.19	0.24	0.0884	0.0354	OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A,ROCK1->Rho_associated_coiled-coil_containing_protein_kinase_1,chr18:18526867-18691812:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0.19	0.24	0.1238	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	9	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	35	25	0.3	0.38	0.0796	0.0531	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BICR31_UPPER_AERODIGESTIVE_TRACT	0.3	0.38	0.1327	TRUE	267	562	48	632	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	CHEK2--OCIAD2	10	2	CHEK2	10866	chr22:29120609:-	OCIAD2	29656	chr4:48901927:-	INCL_NON_REF_SPLICE	YES	40	598	0.23	0.02	0.0884	0.0177	CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,OCIAD2->OCIA_domain_containing_2,chr4:48887036-48908954:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0.02	0.23	0.1061	TRUE	0	0	0	1	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	IGFBP7--KRT17	10	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0884	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0884	TRUE	0	0	0	9	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-CO1--KRT6A	10	0	MT-CO1	1575	chrM:6478:+	KRT6A	5543	chr12:52887041:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0884	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0884	FALSE	7	19	2	8	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	ARMC9--LRRFIP1	9	3	ARMC9	25522	chr2:232160966:+	LRRFIP1	43619	chr2:238617187:+	ONLY_REF_SPLICE	YES	6	47	0.67	0.2	0.0796	0.0265	{Klijn_CCL:Head-Neck=1},ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1	BICR31_UPPER_AERODIGESTIVE_TRACT	0.2	0.67	0.1061	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	27	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.0265	0.2387	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR31_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.2652	FALSE	499	1288	110	792	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP11-603B24.1--HERC2P3	8	7	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0707	0.0619	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.1326	TRUE	27	10	1	20	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	PACSIN2--ST13	6	14	PACSIN2	1125	chr22:43411027:-	ST13	32958	chr22:41236696:-	ONLY_REF_SPLICE	YES	64	586	0.24	0.03	0.0531	0.1238	PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	BICR31_UPPER_AERODIGESTIVE_TRACT	0.03	0.24	0.1769	TRUE	0	0	0	1	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	CHEK2--OCIAD2	9	1	CHEK2	10510	chr22:29120965:-	OCIAD2	30738	chr4:48899874:-	ONLY_REF_SPLICE	YES	34	463	0.23	0.02	0.0796	0.0088	CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,OCIAD2->OCIA_domain_containing_2,chr4:48887036-48908954:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0.02	0.23	0.0884	TRUE	0	0	0	1	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RPL3--KRT17	9	1	RPL3	3847	chr22:39713548:-	KRT17	11639	chr17:39780814:-	INCL_NON_REF_SPLICE	YES	2699	6	0	0.62	0.0796	0.0088	GTEx&tcga_normals:2/3694=0.05%,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3,KRT17->chr17:39775689-39781094:-,keratin_17	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0.62	0.0884	FALSE	0	0	0	2	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	20	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	11	0	0.69	1	0.0354	0.1768	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR31_UPPER_AERODIGESTIVE_TRACT	0.69	1	0.2122	FALSE	344	827	44	306	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	DYNC2H1--SLC36A4	8	1	DYNC2H1	87977	chr11:103306760:+	SLC36A4	98195	chr11:92918980:-	ONLY_REF_SPLICE	YES	9	40	0.5	0.18	0.0707	0.0088	DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1,SLC36A4->chr11:92877341-92931130:-,solute_carrier_family_36_member_4	BICR31_UPPER_AERODIGESTIVE_TRACT	0.18	0.5	0.0795	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	8	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8474	19182	0	0	0.0707	0.0088	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0	0.0795	FALSE	183	104	9	328	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	7	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.92	0.86	0.0619	0.0442	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.86	0.92	0.1061	FALSE	515	4851	409	746	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP3-449O17.1--SHANK3	7	5	RP3-449O17.1	10530	chr22:38757404:-	SHANK3	24164	chr22:51117197:+	ONLY_REF_SPLICE	YES	4	5	0.75	0.71	0.0619	0.0442	RP3-449O17.1->chr22:38731767-38794934:-,SHANK3->SH3_and_multiple_ankyrin_repeat_domains_3,chr22:51112843-51171726:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.71	0.75	0.1061	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	ALDOA--MT-ND4	8	0	ALDOA	9161	chr16:30078933:+	MT-ND4	15475	chrM:11228:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0707	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0707	FALSE	0	0	0	6	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	19	MT-ND6	1199	chrM:14475:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	7	0	0.76	1	0.0265	0.168	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR31_UPPER_AERODIGESTIVE_TRACT	0.76	1	0.1945	FALSE	499	1288	110	792	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP3-449O17.1--SHANK3	7	3	RP3-449O17.1	5950	chr22:38776375:-	SHANK3	24164	chr22:51117197:+	ONLY_REF_SPLICE	YES	22	5	0.31	0.67	0.0619	0.0265	RP3-449O17.1->chr22:38731767-38794934:-,SHANK3->SH3_and_multiple_ankyrin_repeat_domains_3,chr22:51112843-51171726:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.31	0.67	0.0884	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	7	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	31	25	0.23	0.26	0.0619	0.0177	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BICR31_UPPER_AERODIGESTIVE_TRACT	0.23	0.26	0.0796	TRUE	267	562	48	632	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	7	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0.0088	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0707	FALSE	462	80	0	856	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	SHANK2--RP11-501O2.5	7	1	SHANK2	23844	chr11:70742606:-	RP11-501O2.5	63802	chr3:148006722:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0619	0.0088	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,RP11-501O2.5->chr3:147998678-148117743:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.0707	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	15	MT-ND4	1016	chrM:10775:+	MT-ND4L	5463	chrM:10554:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0265	0.1326	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.1591	FALSE	344	821	44	306	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	EIF3C--MT-ND1	6	1	EIF3C	13678	chr16:28738457:+	MT-ND1	20848	chrM:3494:+	INCL_NON_REF_SPLICE	YES	656	5976	0.01	0	0.0531	0.0088	EIF3C->Oncogene{Bushman},chr16:28699879-28747051:+,eukaryotic_translation_initiation_factor_3_subunit_C,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0619	FALSE	0	0	0	1	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	6	1	MT-ATP6	1153	chrM:8679:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	NO	9811	13609	0	0	0.0531	0.0088	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0	0.0619	FALSE	183	104	9	328	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	6	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10301	19182	0	0	0.0531	0.0088	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0	0.0619	FALSE	183	104	9	328	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	9	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	10841	0	0	1	0.0354	0.0796	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR31_UPPER_AERODIGESTIVE_TRACT	0	1	0.115	FALSE	231	217	16	283	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0531	FALSE	499	1288	110	792	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11310	0	0	1	0.0442	0.0265	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR31_UPPER_AERODIGESTIVE_TRACT	0	1	0.0707	FALSE	231	217	16	283	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	7	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10194	74	0	0.13	0.0354	0.0619	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0.13	0.0973	FALSE	231	217	16	283	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	11	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	3	0	0.82	1	0.0265	0.0973	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR31_UPPER_AERODIGESTIVE_TRACT	0.82	1	0.1238	FALSE	344	826	44	306	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0.0619	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0973	FALSE	462	80	0	856	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	APP--MT-ND2	5	1	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	1147	5938	0.01	0	0.0442	0.0088	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.053	FALSE	0	1	0	51	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	5	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	8358	18793	0	0	0.0442	0.0088	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0	0.053	FALSE	183	104	9	328	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	5	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	10187	33	0	0.21	0.0354	0.0442	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0.21	0.0796	FALSE	231	217	16	283	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RPL3--KRT17	5	1	RPL3	3865	chr22:39713530:-	KRT17	11656	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	2731	9	0	0.4	0.0442	0.0088	GTEx&tcga_normals:2/3694=0.05%,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3,KRT17->chr17:39775689-39781094:-,keratin_17	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0.4	0.053	FALSE	0	0	0	2	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	8	MT-ND4	2338	chrM:12097:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	33	1	0.25	0.0265	0.0707	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR31_UPPER_AERODIGESTIVE_TRACT	0.25	1	0.0972	FALSE	209	205	15	279	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	8	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1	33	0.92	0.25	0.0265	0.0707	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR31_UPPER_AERODIGESTIVE_TRACT	0.25	0.92	0.0972	FALSE	209	205	15	279	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0442	FALSE	499	1288	110	792	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	7	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9849	74	0	0.12	0.0265	0.0619	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0.12	0.0884	FALSE	231	215	16	283	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	7	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	10197	0	0	1	0.0265	0.0619	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR31_UPPER_AERODIGESTIVE_TRACT	0	1	0.0884	FALSE	231	217	16	283	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	CEP192--CLUL1	4	2	CEP192	38749	chr18:13100511:+	CLUL1	52321	chr18:606978:+	ONLY_REF_SPLICE	YES	18	1	0.25	0.86	0.0354	0.0177	CEP192->centrosomal_protein_192,chr18:12991361-13125051:+,CLUL1->chr18:596988-650334:+,clusterin_like_1	BICR31_UPPER_AERODIGESTIVE_TRACT	0.25	0.86	0.0531	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	4	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0354	0.0177	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0.86	1	0.0531	FALSE	292	1546	117	613	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	4	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	14	0	0.3	1	0.0354	0.0177	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0.3	1	0.0531	FALSE	164	806	69	479	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0265	0.0531	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.9	1	0.0796	FALSE	407	2205	196	549	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9835	74	0	0.1	0.0265	0.0442	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0.1	0.0707	FALSE	231	217	16	283	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	CTD-2008L17.1--RP11-456O19.2	4	0	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0354	FALSE	33	240	4	98	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	IGFBP7--KRT17	4	0	IGFBP7	1116	chr4:57976436:-	KRT17	10574	chr17:39780796:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0354	TRUE	0	0	0	9	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-CO1--KRT6A	4	0	MT-CO1	1597	chrM:6500:+	KRT6A	5569	chr12:52887015:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0354	FALSE	7	19	2	8	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	4	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0354	FALSE	351	233	23	137	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0354	FALSE	499	1288	110	792	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	SCARB1--UBC	4	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0354	TRUE	55	66	6	101	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	DSTN--SPRR2E	3	3	DSTN	1349	chr20:17550856:+	SPRR2E	14141	chr1:153066246:-	ONLY_REF_SPLICE	YES	432	0	0.01	1	0.0265	0.0265	DSTN->chr20:17550508-17590564:+,destrin,_actin_depolymerizing_factor,SPRR2E->chr1:153065611-153078660:-,small_proline_rich_protein_2E	BICR31_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.053	FALSE	0	0	0	1	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	JUP--MT-CO3	3	3	JUP	8242	chr17:39923795:-	MT-CO3	24128	chrM:9574:+	INCL_NON_REF_SPLICE	YES	1446	13579	0	0	0.0265	0.0265	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0	0.053	FALSE	0	0	0	33	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	JUP--MT-CO3	3	3	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	1532	13998	0	0	0.0265	0.0265	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0	0.053	FALSE	0	0	0	33	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP11-141M1.3--STARD13	3	3	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	34	1	0.15	0.0265	0.0265	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0.15	1	0.053	FALSE	141	264	50	91	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	2	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0.0619	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0796	FALSE	192	492	57	212	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	APP--MT-ND2	3	2	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	1278	4504	0	0	0.0265	0.0177	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0	0.0442	FALSE	0	1	0	51	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	11306	0	0	1	0.0265	0.0177	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR31_UPPER_AERODIGESTIVE_TRACT	0	1	0.0442	FALSE	231	217	16	283	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	SLC16A12--LIPA	3	1	SLC16A12	5062	chr10:91222136:-	LIPA	29664	chr10:91007406:-	ONLY_REF_SPLICE	YES	15	108	0.21	0.04	0.0265	0.0088	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	BICR31_UPPER_AERODIGESTIVE_TRACT	0.04	0.21	0.0353	FALSE	12	128	21	13	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0265	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0265	FALSE	230	193	14	283	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	0	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0265	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0265	FALSE	230	197	14	283	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0265	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0265	FALSE	344	821	44	306	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0265	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0265	FALSE	499	1288	110	792	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	POLRMT--MT-ATP6	3	0	POLRMT	9378	chr19:621275:-	MT-ATP6	16479	chrM:8575:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0265	0	POLRMT->chr19:617223-633597:-,polymerase_(RNA)_mitochondrial,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0265	FALSE	0	0	0	1	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	UNK--ITGB4	1	8	UNK	2645	chr17:73788100:+	ITGB4	46134	chr17:73750657:+	ONLY_REF_SPLICE	YES	38	374	0.19	0.02	0.0088	0.0707	LOCAL_REARRANGEMENT:+:[26782],UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	BICR31_UPPER_AERODIGESTIVE_TRACT	0.02	0.19	0.0795	TRUE	0	0	0	1	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	CTD-2008L17.1--RP11-456O19.2	2	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0177	0.0265	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.56	1	0.0442	FALSE	20	187	4	79	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.24	1	0.0177	0.0177	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0.24	1	0.0354	FALSE	125	705	46	456	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	ZNF44--PSPC1	2	2	ZNF44	5673	chr19:12385788:-	PSPC1	36692	chr13:20251963:-	ONLY_REF_SPLICE	YES	11	13	0.27	0.24	0.0177	0.0177	ZNF44->chr19:12335501-12405702:-,zinc_finger_protein_44,PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	BICR31_UPPER_AERODIGESTIVE_TRACT	0.24	0.27	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	CMTM8--CMTM7	2	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	18	13	0.14	0.19	0.0177	0.0088	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.14	0.19	0.0265	FALSE	118	557	29	88	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP11-155G15.2--RP11-1E3.1	2	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0.0088	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0265	FALSE	46	201	11	112	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	EPS8L2--CHID1	2	0	EPS8L2	6547	chr11:710486:+	CHID1	23096	chr11:904859:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	EPS8L2->EPS8_like_2,chr11:694438-727727:+,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP11-141M1.3--STARD13	1	3	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	34	1	0.11	0.0088	0.0265	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.0353	FALSE	49	120	16	70	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP3-449O17.1--SHANK3	1	3	RP3-449O17.1	7229	chr22:38765991:-	SHANK3	24164	chr22:51117197:+	ONLY_REF_SPLICE	NO	23	5	0.15	0.44	0.0088	0.0265	RP3-449O17.1->chr22:38731767-38794934:-,SHANK3->SH3_and_multiple_ankyrin_repeat_domains_3,chr22:51112843-51171726:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.15	0.44	0.0353	TRUE	0	0	0	1	0	TRUE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	1	2	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	21	16	0.12	0.16	0.0088	0.0177	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0.12	0.16	0.0265	TRUE	105	90	7	93	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	MPZL3--MPZL2	1	2	MPZL3	1129	chr11:118122937:-	MPZL2	14853	chr11:118133363:-	ONLY_REF_SPLICE	YES	11	385	0.21	0.01	0.0088	0.0177	GTEx&tcga_normals:5/3694=0.14%,HGNC_GENEFAM,PROTCLUST,{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[1053],MPZL3->chr11:118097409-118123065:-,myelin_protein_zero_like_3,MPZL2->chr11:118124118-118135251:-,myelin_protein_zero_like_2	BICR31_UPPER_AERODIGESTIVE_TRACT	0.01	0.21	0.0265	FALSE	0	0	0	1	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	75	1	0.04	0.0088	0.0177	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.04	1	0.0265	TRUE	64	13	3	59	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	ATP5I--GAK	1	1	ATP5I	2036	chr4:667092:-	GAK	11858	chr4:898562:-	ONLY_REF_SPLICE	YES	16	100	0.11	0.02	0.0088	0.0088	ATP5I->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_E,chr4:666225-668127:-,GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase	BICR31_UPPER_AERODIGESTIVE_TRACT	0.02	0.11	0.0176	TRUE	0	0	0	1	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	CCDC122--ENOX1	1	1	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	48	2	0.04	0.5	0.0088	0.0088	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	BICR31_UPPER_AERODIGESTIVE_TRACT	0.04	0.5	0.0176	FALSE	39	52	2	34	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	CHEK2--OCIAD2	1	1	CHEK2	10510	chr22:29120965:-	OCIAD2	32442	chr4:48896070:-	ONLY_REF_SPLICE	YES	34	390	0.06	0.01	0.0088	0.0088	CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,OCIAD2->OCIA_domain_containing_2,chr4:48887036-48908954:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0.01	0.06	0.0176	FALSE	0	0	0	1	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	CLIC1--RPL7	1	1	CLIC1	4985	chr6:31701613:-	RPL7	14663	chr8:74203896:-	ONLY_REF_SPLICE	NO	1455	2635	0	0	0.0088	0.0088	CLIC1->chloride_intracellular_channel_1,chr6:31698358-31707540:-,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0	0.0176	FALSE	0	0	0	12	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	ICAM5--CHMP1A	1	1	ICAM5	6632	chr19:10406288:+	CHMP1A	15576	chr16:89713739:-	ONLY_REF_SPLICE	YES	1	471	0.67	0	0.0088	0.0088	ICAM5->Oncogene{Bushman},chr19:10400657-10407454:+,intercellular_adhesion_molecule_5,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	BICR31_UPPER_AERODIGESTIVE_TRACT	0	0.67	0.0176	FALSE	0	0	0	1	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	RP11-155G15.2--RP11-1E3.1	1	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	7991	chr5:96856933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0088	0.0088	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	BICR31_UPPER_AERODIGESTIVE_TRACT	1	1	0.0176	FALSE	0	1	1	12	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	SLC16A12--LIPA	1	1	SLC16A12	5062	chr10:91222136:-	LIPA	21774	chr10:91095291:-	ONLY_REF_SPLICE	YES	15	6	0.12	0.25	0.0088	0.0088	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	BICR31_UPPER_AERODIGESTIVE_TRACT	0.12	0.25	0.0176	FALSE	0	2	0	2	0	FALSE	ACH-000228
BICR31_UPPER_AERODIGESTIVE_TRACT	XKR9--RP11-326E22.1	1	1	XKR9	8344	chr8:71619388:+	RP11-326E22.1	21087	chr8:72111375:+	ONLY_REF_SPLICE	YES	17	0	0.11	1	0.0088	0.0088	GTEx_FI:{Brain=[count:4=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Liver=[count:1=pct:0.8]},XKR9->XK_related_9,chr8:71581600-71702606:+,RP11-326E22.1->chr8:72067692-72116458:+	BICR31_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.0176	TRUE	5	29	0	13	0	FALSE	ACH-000228
D341MED_CENTRAL_NERVOUS_SYSTEM	RP11-408A13.2--NFIB	226	73	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	43	1	0.87	2.4832	0.8021	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	D341MED_CENTRAL_NERVOUS_SYSTEM	0.87	1	3.2853	TRUE	0	14	0	20	14	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	107	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1757	0.2198	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	1.3955	TRUE	508	994	45	981	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	48	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	103	11	0.32	0.82	0.5274	0.011	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	D341MED_CENTRAL_NERVOUS_SYSTEM	0.32	0.82	0.5384	TRUE	519	3926	326	965	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	35	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3846	0.044	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.4286	FALSE	462	80	0	856	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	27	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.8	0.2967	0.011	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	D341MED_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.3077	TRUE	458	1351	185	561	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	26	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2857	0.044	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	D341MED_CENTRAL_NERVOUS_SYSTEM	0.97	1	0.3297	FALSE	499	1288	110	792	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	17	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1868	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.1868	FALSE	13	9	0	364	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	12	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.1319	0.1648	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	D341MED_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.2967	FALSE	499	1288	110	792	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	12	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1319	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.1319	FALSE	13	9	0	364	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	MT-TL1--MT-RNR2	3	35	MT-TL1	1054	chrM:3283:+	MT-RNR2	5282	chrM:2877:+	INCL_NON_REF_SPLICE	YES	0	13	1	0.75	0.033	0.3846	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	D341MED_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.4176	FALSE	7	521	16	32	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	11	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1209	0.033	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.1539	FALSE	416	2512	207	587	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1209	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.1209	TRUE	0	0	0	434	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	EEF2--RPS28	10	3	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	5499	0	0	1	0.1099	0.033	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	D341MED_CENTRAL_NERVOUS_SYSTEM	0	1	0.1429	TRUE	0	0	0	100	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	10	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1099	0.033	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.1429	FALSE	462	80	0	856	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	10	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1099	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.1099	TRUE	465	1949	224	605	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	EEF2--RPS28	8	5	EEF2	8863	chr19:3977449:-	RPS28	13639	chr19:8386422:+	INCL_NON_REF_SPLICE	YES	5143	0	0	1	0.0879	0.0549	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	D341MED_CENTRAL_NERVOUS_SYSTEM	0	1	0.1428	TRUE	0	0	0	100	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	8	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0879	0.044	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	D341MED_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.1319	FALSE	499	1288	110	792	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	5	16	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.0549	0.1758	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	D341MED_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.2307	FALSE	499	1288	110	792	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	REV3L--RPL28	9	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0989	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0989	TRUE	22	156	2	142	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	MT-ND1--MT-TL1	6	10	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0659	0.1099	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	D341MED_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.1758	FALSE	210	95	5	49	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	EIF1--RPS28	8	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0879	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0879	TRUE	0	0	0	81	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	5	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0549	0.1209	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	D341MED_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.1758	FALSE	499	1288	110	792	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	19	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.033	0.2088	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	D341MED_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.2418	FALSE	499	1288	110	792	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	MT-ND1--MT-TL1	3	18	MT-ND1	1341	chrM:3647:+	MT-TL1	5012	chrM:3285:+	INCL_NON_REF_SPLICE	YES	9	0	0.7	1	0.033	0.1978	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	D341MED_CENTRAL_NERVOUS_SYSTEM	0.7	1	0.2308	FALSE	210	95	5	49	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	MT-TL1--MT-RNR2	7	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0769	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0769	FALSE	7	521	16	32	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	HKR1--AC074286.1	6	0	HKR1	6449	chr19:37815167:+	AC074286.1	32222	chr2:178186965:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0659	0	HKR1->HKR1,_GLI-Kruppel_zinc_finger_family_member,Oncogene{Bushman},chr19:37803739-37860267:+,AC074286.1->chr2:178148236-178257419:-	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0659	TRUE	0	3	0	2	3	TRUE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	MT-ND1--MT-TL1	3	11	MT-ND1	1263	chrM:3569:+	MT-TL1	5019	chrM:3292:+	INCL_NON_REF_SPLICE	YES	4	0	0.78	1	0.033	0.1209	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	D341MED_CENTRAL_NERVOUS_SYSTEM	0.78	1	0.1539	FALSE	210	95	5	49	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	RPL3--EEF2	5	3	RPL3	5720	chr22:39711525:-	EEF2	12529	chr19:3984297:-	INCL_NON_REF_SPLICE	NO	6678	3183	0	0	0.0549	0.033	GTEx&tcga_normals:6/3694=0.16%,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	D341MED_CENTRAL_NERVOUS_SYSTEM	0	0	0.0879	FALSE	0	0	0	1	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	MT-ND1--MT-TL1	3	10	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	5	0	0.72	1	0.033	0.1099	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	D341MED_CENTRAL_NERVOUS_SYSTEM	0.72	1	0.1429	FALSE	210	95	5	49	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	PSAP--EEF2	5	1	PSAP	8550	chr10:73581651:-	EEF2	25206	chr19:3976572:-	INCL_NON_REF_SPLICE	YES	575	4930	0.01	0	0.0549	0.011	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.05%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	D341MED_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0659	FALSE	0	0	0	2	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0549	FALSE	462	80	0	856	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	ZFAT--TMEM71	4	2	ZFAT	7027	chr8:135649704:-	TMEM71	34511	chr8:133771161:-	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.044	0.022	ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing,TMEM71->chr8:133697253-133772958:-,transmembrane_protein_71	D341MED_CENTRAL_NERVOUS_SYSTEM	0.55	1	0.066	TRUE	0	0	0	1	0	TRUE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	5	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.033	0.0549	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	D341MED_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.0879	FALSE	499	1288	110	792	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	TMEM244--ARHGAP18	3	4	TMEM244	3552	chr6:130164675:-	ARHGAP18	10024	chr6:129963163:-	ONLY_REF_SPLICE	YES	137	2	0.05	0.78	0.033	0.044	GTEx_FI:{Brain=[count:4=pct:0.6]},TMEM244->chr6:130152389-130182692:-,transmembrane_protein_244,ARHGAP18->Rho_GTPase_activating_protein_18,chr6:129897277-130031370:-	D341MED_CENTRAL_NERVOUS_SYSTEM	0.05	0.78	0.077	TRUE	0	1	0	1	1	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	3	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0.022	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.055	FALSE	16	356	14	466	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	RPL3--EEF2	3	1	RPL3	3820	chr22:39713575:-	EEF2	16810	chr19:3980016:-	INCL_NON_REF_SPLICE	YES	5392	4227	0	0	0.033	0.011	GTEx&tcga_normals:6/3694=0.16%,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	D341MED_CENTRAL_NERVOUS_SYSTEM	0	0	0.044	FALSE	0	0	0	3	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.033	FALSE	499	1288	110	792	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	PHF20L1--CHMP1A	3	0	PHF20L1	21076	chr8:133829790:+	CHMP1A	44993	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Lung=1,Thyroid=1,Whole_Blood=1},PHF20L1->PHD_finger_protein_20-like_1,chr8:133787618-133861052:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	ZFAT--TMEM71	2	2	ZFAT	7027	chr8:135649704:-	TMEM71	37193	chr8:133764243:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.022	0.022	ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing,TMEM71->chr8:133697253-133772958:-,transmembrane_protein_71	D341MED_CENTRAL_NERVOUS_SYSTEM	0.44	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	ZFAT--TMEM71	2	2	ZFAT	7027	chr8:135649704:-	TMEM71	36132	chr8:133769540:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.022	0.022	ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing,TMEM71->chr8:133697253-133772958:-,transmembrane_protein_71	D341MED_CENTRAL_NERVOUS_SYSTEM	0.44	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	DPF2--EIF3L	2	0	DPF2	2854	chr11:65108544:+	EIF3L	23116	chr22:38266183:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	DPF2->chr11:65101225-65120720:+,double_PHD_fingers_2,EIF3L->chr22:38244875-38285414:+,eukaryotic_translation_initiation_factor_3_subunit_L	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.022	TRUE	53	396	64	110	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	D341MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.022	TRUE	62	24	1	171	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	FAM155B--EDA	1	3	FAM155B	1903	chrX:68725986:+	EDA	20199	chrX:69176877:+	ONLY_REF_SPLICE	YES	19	8	0.17	0.33	0.011	0.033	NEIGHBORS[83560],FAM155B->chrX:68725084-68752351:+,family_with_sequence_similarity_155_member_B,EDA->chrX:68835911-69259319:+,ectodysplasin_A	D341MED_CENTRAL_NERVOUS_SYSTEM	0.17	0.33	0.044	FALSE	6	5	0	3	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	AP001432.14--TTC3	1	1	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	11	185	0.15	0.01	0.011	0.011	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	D341MED_CENTRAL_NERVOUS_SYSTEM	0.01	0.15	0.022	FALSE	0	0	0	15	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	CTC-786C10.1--GSE1	1	1	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	NO	0	183	1	0.01	0.011	0.011	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	D341MED_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.022	FALSE	2	3	0	21	0	FALSE	ACH-000095
D341MED_CENTRAL_NERVOUS_SYSTEM	TMEM244--ARHGAP18	1	1	TMEM244	1392	chr6:130182301:-	ARHGAP18	10024	chr6:129963163:-	ONLY_REF_SPLICE	NO	38	2	0.05	0.5	0.011	0.011	GTEx_FI:{Brain=[count:4=pct:0.6]},TMEM244->chr6:130152389-130182692:-,transmembrane_protein_244,ARHGAP18->Rho_GTPase_activating_protein_18,chr6:129897277-130031370:-	D341MED_CENTRAL_NERVOUS_SYSTEM	0.05	0.5	0.022	TRUE	3	2	2	2	0	FALSE	ACH-000095
NCIH1299_LUNG	LNPEP--CAST	261	44	LNPEP	1781	chr5:96271878:+	CAST	69709	chr5:96097978:+	ONLY_REF_SPLICE	YES	17	337	0.95	0.48	2.989	0.5039	GTEx_v2:{count=1;pct=0.01%;dist=Minor_Salivary_Gland=1},LNPEP->Oncogene{Bushman},chr5:96271098-96373219:+,leucyl/cystinyl_aminopeptidase,CAST->calpastatin,chr5:95860971-96115299:+	NCIH1299_LUNG	0.48	0.95	3.4929	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	IPO7--MYH9	131	100	IPO7	23232	chr11:9462208:+	MYH9	58858	chr22:36693060:-	ONLY_REF_SPLICE	YES	429	666	0.35	0.26	1.5002	1.1452	{Klijn_CCL:Lung=1},IPO7->chr11:9406169-9469673:+,importin_7,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	NCIH1299_LUNG	0.26	0.35	2.6454	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	TIMM23B--LINC00843	87	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9963	0.3665	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1299_LUNG	0.99	1	1.3628	TRUE	508	994	45	981	0	FALSE	ACH-000510
NCIH1299_LUNG	FAM171A2--MYL4	81	51	FAM171A2	2833	chr17:42436947:-	MYL4	14627	chr17:45297270:+	ONLY_REF_SPLICE	YES	37	0	0.78	1	0.9276	0.584	{Klijn_CCL:Lung=1},FAM171A2->chr17:42430583-42441243:-,family_with_sequence_similarity_171_member_A2,MYL4->chr17:45277812-45301045:+,myosin_light_chain_4	NCIH1299_LUNG	0.78	1	1.5116	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	TSPAN4--RPLP2	75	54	TSPAN4	6469	chr11:850367:+	RPLP2	18178	chr11:812535:+	ONLY_REF_SPLICE	YES	527	2684	0.2	0.05	0.8589	0.6184	LOCAL_REARRANGEMENT:+:[29928],TSPAN4->chr11:842808-867116:+,tetraspanin_4,RPLP2->chr11:809647-812880:+,ribosomal_protein_lateral_stalk_subunit_P2	NCIH1299_LUNG	0.05	0.2	1.4773	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	CIZ1--SPTAN1	74	25	CIZ1	13699	chr9:130931331:-	SPTAN1	25424	chr9:131339102:+	ONLY_REF_SPLICE	YES	272	197	0.27	0.33	0.8474	0.2863	{Klijn_CCL:Lung=1},CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-,SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1	NCIH1299_LUNG	0.27	0.33	1.1337	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	FRYL--GABRA4	61	30	FRYL	1245	chr4:48782095:-	GABRA4	91878	chr4:46930772:-	ONLY_REF_SPLICE	YES	30	0	0.75	1	0.6986	0.3436	FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,GABRA4->chr4:46920917-46996424:-,gamma-aminobutyric_acid_type_A_receptor_alpha4_subunit	NCIH1299_LUNG	0.75	1	1.0422	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	FAM171A2--MYL4	44	71	FAM171A2	4626	chr17:42433798:-	MYL4	14627	chr17:45297270:+	ONLY_REF_SPLICE	YES	27	0	0.81	1	0.5039	0.8131	{Klijn_CCL:Lung=1},FAM171A2->chr17:42430583-42441243:-,family_with_sequence_similarity_171_member_A2,MYL4->chr17:45277812-45301045:+,myosin_light_chain_4	NCIH1299_LUNG	0.81	1	1.317	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	TIMM23--RP11-464F9.1	61	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	299	7	0.17	0.9	0.6986	0.0229	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1299_LUNG	0.17	0.9	0.7215	TRUE	519	3926	326	965	0	FALSE	ACH-000510
NCIH1299_LUNG	C15orf57--CBX3	45	31	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	45	38	0.63	0.67	0.5153	0.355	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1299_LUNG	0.63	0.67	0.8703	TRUE	267	562	48	632	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-TA--MT-TC	45	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5153	0.0802	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1299_LUNG	1	1	0.5955	FALSE	462	80	0	856	0	FALSE	ACH-000510
NCIH1299_LUNG	PLCL2--ITPR1	22	19	PLCL2	2852	chr3:16926865:+	ITPR1	57817	chr3:4752009:+	ONLY_REF_SPLICE	YES	4	8	0.91	0.84	0.2519	0.2176	PLCL2->chr3:16844159-17132086:+,phospholipase_C_like_2,ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1	NCIH1299_LUNG	0.84	0.91	0.4695	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	LNPEP--CAST	14	22	LNPEP	1781	chr5:96271878:+	CAST	70808	chr5:96100925:+	ONLY_REF_SPLICE	YES	17	382	0.68	0.09	0.1603	0.2519	GTEx_v2:{count=1;pct=0.01%;dist=Minor_Salivary_Gland=1},LNPEP->Oncogene{Bushman},chr5:96271098-96373219:+,leucyl/cystinyl_aminopeptidase,CAST->calpastatin,chr5:95860971-96115299:+	NCIH1299_LUNG	0.09	0.68	0.4122	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	SLC30A7--RP4-549L20.3	16	12	SLC30A7	10458	chr1:101431474:+	RP4-549L20.3	22825	chr1:101360524:+	INCL_NON_REF_SPLICE	YES	16	0	0.64	1	0.1832	0.1374	LOCAL_REARRANGEMENT:+:[720],SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7,RP4-549L20.3->chr1:101360484-101360912:+	NCIH1299_LUNG	0.64	1	0.3206	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	MT-ND6--MT-TE	14	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.1603	0.0802	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1299_LUNG	0.88	1	0.2405	FALSE	499	1288	110	792	0	FALSE	ACH-000510
NCIH1299_LUNG	FCGRT--RPL13A	14	6	FCGRT	4317	chr19:50017743:+	RPL13A	15094	chr19:49993107:+	ONLY_REF_SPLICE	YES	86	0	0.19	1	0.1603	0.0687	LOCAL_REARRANGEMENT:+:[14508],FCGRT->Fc_fragment_of_IgG_receptor_and_transporter,chr19:50010073-50029590:+,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	NCIH1299_LUNG	0.19	1	0.229	TRUE	0	1	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	C15orf57--CBX3	9	22	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	45	40	0.41	0.44	0.1031	0.2519	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1299_LUNG	0.41	0.44	0.355	TRUE	267	562	48	632	0	FALSE	ACH-000510
NCIH1299_LUNG	FAM171A2--MYL4	14	1	FAM171A2	1279	chr17:42440965:-	MYL4	14627	chr17:45297270:+	ONLY_REF_SPLICE	YES	8	0	0.65	1	0.1603	0.0115	{Klijn_CCL:Lung=1},FAM171A2->chr17:42430583-42441243:-,family_with_sequence_similarity_171_member_A2,MYL4->chr17:45277812-45301045:+,myosin_light_chain_4	NCIH1299_LUNG	0.65	1	0.1718	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-CO1	13	3	MT-ND4	1201	chrM:10960:+	MT-CO1	5811	chrM:6336:+	INCL_NON_REF_SPLICE	YES	14849	24174	0	0	0.1489	0.0344	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1299_LUNG	0	0	0.1833	FALSE	19	89	11	16	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-CO1	7	25	MT-ND4	1773	chrM:11532:+	MT-CO1	5916	chrM:6441:+	INCL_NON_REF_SPLICE	YES	19899	24265	0	0	0.0802	0.2863	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1299_LUNG	0	0	0.3665	FALSE	19	92	11	16	0	FALSE	ACH-000510
NCIH1299_LUNG	ARID2--KCTD16	12	4	ARID2	2571	chr12:46125097:+	KCTD16	36471	chr5:143585952:+	ONLY_REF_SPLICE	YES	46	0	0.26	1	0.1374	0.0458	ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,KCTD16->chr5:143550396-143865249:+,potassium_channel_tetramerization_domain_containing_16	NCIH1299_LUNG	0.26	1	0.1832	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	MT-ND6--MT-TE	12	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1374	0.0115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1299_LUNG	1	1	0.1489	FALSE	499	1288	110	792	0	FALSE	ACH-000510
NCIH1299_LUNG	BDNF--LGR4	11	3	BDNF	6018	chr11:27721711:-	LGR4	19122	chr11:27434407:-	ONLY_REF_SPLICE	YES	26	1	0.35	0.93	0.126	0.0344	BDNF->brain-derived_neurotrophic_factor,chr11:27676440-27743605:-,LGR4->chr11:27387508-27494322:-,leucine-rich_repeat_containing_G_protein-coupled_receptor_4	NCIH1299_LUNG	0.35	0.93	0.1604	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	MT-ND6--MT-TE	11	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.126	0.0115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1299_LUNG	1	1	0.1375	FALSE	499	1288	110	792	0	FALSE	ACH-000510
NCIH1299_LUNG	RP11-603B24.1--HERC2P3	9	8	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	26	1	0.4	0.1031	0.0916	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	NCIH1299_LUNG	0.4	1	0.1947	TRUE	27	10	1	20	0	FALSE	ACH-000510
NCIH1299_LUNG	BDNF--LGR4	10	2	BDNF	4885	chr11:27722844:-	LGR4	19122	chr11:27434407:-	ONLY_REF_SPLICE	YES	12	1	0.5	0.92	0.1145	0.0229	BDNF->brain-derived_neurotrophic_factor,chr11:27676440-27743605:-,LGR4->chr11:27387508-27494322:-,leucine-rich_repeat_containing_G_protein-coupled_receptor_4	NCIH1299_LUNG	0.5	0.92	0.1374	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-CO1	4	25	MT-ND4	1776	chrM:11535:+	MT-CO1	5922	chrM:6447:+	INCL_NON_REF_SPLICE	YES	19950	24183	0	0	0.0458	0.2863	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1299_LUNG	0	0	0.3321	FALSE	19	92	11	16	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-CO3--MT-ATP6	3	28	MT-CO3	1205	chrM:9411:+	MT-ATP6	4743	chrM:8485:+	INCL_NON_REF_SPLICE	YES	6	0	0.84	1	0.0344	0.3207	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1299_LUNG	0.84	1	0.3551	FALSE	189	492	56	216	0	FALSE	ACH-000510
NCIH1299_LUNG	C15orf57--CBX3	4	23	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	45	38	0.38	0.42	0.0458	0.2634	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1299_LUNG	0.38	0.42	0.3092	TRUE	267	562	48	632	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ATP6--MT-CO1	9	3	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	9388	25444	0	0	0.1031	0.0344	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1299_LUNG	0	0	0.1375	FALSE	183	104	9	328	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	9	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17545	6	0	0.65	0.1031	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	0.65	0.126	FALSE	231	205	14	283	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	6	13	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6024	39	0	0.33	0.0687	0.1489	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	0.33	0.2176	FALSE	218	210	16	281	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ATP6--MT-CO1	6	11	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3482	26961	0	0	0.0687	0.126	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1299_LUNG	0	0	0.1947	FALSE	183	104	9	328	0	FALSE	ACH-000510
NCIH1299_LUNG	LNPEP--CAST	3	22	LNPEP	1781	chr5:96271878:+	CAST	70811	chr5:96100928:+	ONLY_REF_SPLICE	YES	17	378	0.6	0.06	0.0344	0.2519	GTEx_v2:{count=1;pct=0.01%;dist=Minor_Salivary_Gland=1},LNPEP->Oncogene{Bushman},chr5:96271098-96373219:+,leucyl/cystinyl_aminopeptidase,CAST->calpastatin,chr5:95860971-96115299:+	NCIH1299_LUNG	0.06	0.6	0.2863	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	8	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15463	6	0	0.62	0.0916	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	0.62	0.1145	FALSE	230	198	14	283	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	6	10	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18912	39	0	0.29	0.0687	0.1145	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	0.29	0.1832	FALSE	231	217	16	283	0	FALSE	ACH-000510
NCIH1299_LUNG	RP11-96H19.1--RP11-446N19.1	8	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0916	0.0229	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1299_LUNG	0.91	1	0.1145	FALSE	515	4851	409	746	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-CO3--MT-ATP6	3	21	MT-CO3	1136	chrM:9342:+	MT-ATP6	4831	chrM:8573:+	INCL_NON_REF_SPLICE	YES	5	0	0.83	1	0.0344	0.2405	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1299_LUNG	0.83	1	0.2749	FALSE	189	492	56	216	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-CO3--MT-ATP6	8	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.0916	0.0115	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1299_LUNG	0.69	1	0.1031	FALSE	189	492	56	216	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	6	9	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19899	6	0	0.71	0.0687	0.1031	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	0.71	0.1718	FALSE	231	217	16	283	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	5	12	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	19587	0	0	1	0.0573	0.1374	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	1	0.1947	FALSE	231	217	16	283	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	6	8	MT-ND4	1528	chrM:11287:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22516	6	0	0.7	0.0687	0.0916	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	0.7	0.1603	FALSE	231	217	16	283	0	FALSE	ACH-000510
NCIH1299_LUNG	PPP4R1--CTD-2078B5.2	7	4	PPP4R1	2015	chr18:9614224:-	CTD-2078B5.2	30696	chr5:39521621:+	ONLY_REF_SPLICE	YES	94	0	0.1	1	0.0802	0.0458	PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,CTD-2078B5.2->chr5:39520533-39524810:+	NCIH1299_LUNG	0.1	1	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	PVT1--SNTB1	8	0	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0916	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH1299_LUNG	1	1	0.0916	TRUE	0	0	0	25	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-CO3--MT-ATP6	3	18	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	4	0.95	0.84	0.0344	0.2061	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1299_LUNG	0.84	0.95	0.2405	FALSE	189	492	56	216	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	7	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15313	3	0	0.75	0.0802	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	0.75	0.1031	FALSE	230	193	14	283	0	FALSE	ACH-000510
NCIH1299_LUNG	CIZ1--SPTAN1	2	21	CIZ1	13675	chr9:130931355:-	SPTAN1	25424	chr9:131339102:+	ONLY_REF_SPLICE	YES	241	197	0.09	0.1	0.0229	0.2405	{Klijn_CCL:Lung=1},CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-,SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1	NCIH1299_LUNG	0.09	0.1	0.2634	TRUE	0	0	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-CO3--MT-ATP6	3	17	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	1	0.95	0.95	0.0344	0.1947	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1299_LUNG	0.95	0.95	0.2291	FALSE	189	492	56	216	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	4	13	MT-ND4	2326	chrM:12085:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	6	60	0.74	0.22	0.0458	0.1489	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0.22	0.74	0.1947	FALSE	209	205	15	279	0	FALSE	ACH-000510
NCIH1299_LUNG	CAPRIN2--RASSF8	5	8	CAPRIN2	5280	chr12:30893954:-	RASSF8	30075	chr12:26147970:+	ONLY_REF_SPLICE	YES	118	0	0.1	1	0.0573	0.0916	CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-,RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+	NCIH1299_LUNG	0.1	1	0.1489	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	5	8	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22324	39	0	0.25	0.0573	0.0916	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	0.25	0.1489	FALSE	231	217	16	283	0	FALSE	ACH-000510
NCIH1299_LUNG	NPEPPS--LUZP4	7	0	NPEPPS	3699	chr17:45623359:+	LUZP4	36689	chrX:114536557:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0802	0	NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+,LUZP4->chrX:114524293-114542121:+,leucine_zipper_protein_4	NCIH1299_LUNG	1	1	0.0802	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	RP11-123O10.4--GRIP1	7	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0802	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1299_LUNG	1	1	0.0802	FALSE	416	2512	207	587	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND5--MT-ND6	6	3	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	3244	1	0	0.0687	0.0344	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH1299_LUNG	0	1	0.1031	FALSE	26	124	4	93	0	FALSE	ACH-000510
NCIH1299_LUNG	ASAP1--FAM49B	6	2	ASAP1	7774	chr8:131370263:-	FAM49B	54419	chr8:130916831:-	ONLY_REF_SPLICE	YES	98	434	0.08	0.02	0.0687	0.0229	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	NCIH1299_LUNG	0.02	0.08	0.0916	FALSE	0	1	0	2	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ATP6--MT-CO1	5	6	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12061	26041	0	0	0.0573	0.0687	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1299_LUNG	0	0	0.126	FALSE	183	104	9	328	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	3	14	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18851	0	0	1	0.0344	0.1603	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	1	0.1947	FALSE	231	217	16	283	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-CO1	3	13	MT-ND4	1467	chrM:11226:+	MT-CO1	5695	chrM:6220:+	INCL_NON_REF_SPLICE	YES	20583	21968	0	0	0.0344	0.1489	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1299_LUNG	0	0	0.1833	FALSE	19	92	11	16	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ATP6--MT-CO1	3	12	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	12061	0	0	1	0.0344	0.1374	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1299_LUNG	0	1	0.1718	FALSE	182	97	9	327	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	3	11	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	19499	0	0	1	0.0344	0.126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	1	0.1604	FALSE	231	217	16	283	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND6--MT-TE	5	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0573	0.0344	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1299_LUNG	1	1	0.0917	FALSE	499	1288	110	792	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-TA--MT-TC	4	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0.0802	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1299_LUNG	1	1	0.126	FALSE	462	80	0	856	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	19343	0	0	1	0.0573	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	1	0.0802	FALSE	231	205	14	283	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	19145	0	0	1	0.0344	0.1145	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	1	0.1489	FALSE	231	217	16	283	0	FALSE	ACH-000510
NCIH1299_LUNG	POLR2E--LPPR3	5	2	POLR2E	2696	chr19:1093903:-	LPPR3	12928	chr19:821585:-	ONLY_REF_SPLICE	YES	667	4	0.01	0.64	0.0573	0.0229	POLR2E->chr19:1086594-1095598:-,polymerase_(RNA)_II_subunit_E,LPPR3->chr19:812518-821967:-	NCIH1299_LUNG	0.01	0.64	0.0802	FALSE	0	0	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	RP11-634B7.4--TRIM58	5	2	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	12	0.88	0.37	0.0573	0.0229	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	NCIH1299_LUNG	0.37	0.88	0.0802	TRUE	158	633	76	73	0	FALSE	ACH-000510
NCIH1299_LUNG	CTD-2337A12.1--CAST	5	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	25	1	0.19	0.0573	0.0115	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH1299_LUNG	0.19	1	0.0688	TRUE	347	1186	183	220	0	FALSE	ACH-000510
NCIH1299_LUNG	EXD3--EHMT1	5	1	EXD3	1149	chr9:140317566:-	EHMT1	36349	chr9:140605419:+	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0573	0.0115	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1},EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1	NCIH1299_LUNG	0.75	1	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	3	9	MT-ND4	1779	chrM:11538:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19892	6	0	0.67	0.0344	0.1031	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	0.67	0.1375	FALSE	231	217	16	283	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	3	9	MT-ND4	1528	chrM:11287:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	NO	22516	0	0	1	0.0344	0.1031	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	1	0.1375	FALSE	231	217	16	283	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-TA--MT-TC	5	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0573	0.0115	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1299_LUNG	1	1	0.0688	FALSE	462	80	0	856	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0573	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	1	1	0.0573	FALSE	351	233	23	137	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1531	chrM:11290:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	22471	3	0	0.79	0.0344	0.0916	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	0.79	0.126	FALSE	231	217	16	283	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ATP6--MT-CO1	4	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9404	26467	0	0	0.0458	0.0344	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1299_LUNG	0	0	0.0802	FALSE	183	104	9	328	0	FALSE	ACH-000510
NCIH1299_LUNG	CPVL--JAZF1	4	2	CPVL	8001	chr7:29160509:-	JAZF1	28211	chr7:28031600:-	ONLY_REF_SPLICE	YES	156	7	0.04	0.46	0.0458	0.0229	{Klijn_CCL:Lung=1},CPVL->carboxypeptidase,_vitellogenic_like,chr7:29034847-29235067:-,JAZF1->JAZF_zinc_finger_1,Oncogene{Bushman},chr7:27870192-28220362:-	NCIH1299_LUNG	0.04	0.46	0.0687	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	LAMC3--URM1	4	2	LAMC3	5109	chr9:133911719:+	URM1	36822	chr9:131150095:+	ONLY_REF_SPLICE	YES	28	205	0.18	0.03	0.0458	0.0229	LAMC3->chr9:133884469-133969860:+,laminin_subunit_gamma_3,URM1->chr9:131133598-131153015:+,ubiquitin_related_modifier_1	NCIH1299_LUNG	0.03	0.18	0.0687	TRUE	0	0	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	19833	0	0	1	0.0458	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	1	0.0687	FALSE	231	217	16	283	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-TA--MT-TC	4	2	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0.0229	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1299_LUNG	1	1	0.0687	FALSE	462	80	0	856	0	FALSE	ACH-000510
NCIH1299_LUNG	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0458	0.0229	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1299_LUNG	0.86	1	0.0687	FALSE	407	2205	196	549	0	FALSE	ACH-000510
NCIH1299_LUNG	RP11-680G10.1--GSE1	3	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	61	1	0.12	0.0344	0.0573	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1299_LUNG	0.12	1	0.0917	TRUE	458	1351	185	561	0	FALSE	ACH-000510
NCIH1299_LUNG	AP000525.9--LA16c-60G3.6	4	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH1299_LUNG	1	1	0.0458	TRUE	0	42	0	133	42	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1299_LUNG	1	1	0.0458	FALSE	499	1288	110	792	0	FALSE	ACH-000510
NCIH1299_LUNG	RP11-120D5.1--MID1	4	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1299_LUNG	1	1	0.0458	FALSE	0	48	1	163	0	FALSE	ACH-000510
NCIH1299_LUNG	RP11-476K15.1--CTD-2015H3.2	4	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCIH1299_LUNG	1	1	0.0458	FALSE	0	46	0	73	0	FALSE	ACH-000510
NCIH1299_LUNG	PBX3--AIF1L	3	3	PBX3	2279	chr9:128510902:+	AIF1L	31900	chr9:133995622:+	ONLY_REF_SPLICE	YES	202	5	0.03	0.55	0.0344	0.0344	PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,AIF1L->allograft_inflammatory_factor_1_like,chr9:133971863-133998539:+	NCIH1299_LUNG	0.03	0.55	0.0688	TRUE	0	0	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	CAPRIN2--RASSF8	3	2	CAPRIN2	5280	chr12:30893954:-	RASSF8	36062	chr12:26208169:+	ONLY_REF_SPLICE	YES	118	9	0.04	0.36	0.0344	0.0229	CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-,RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+	NCIH1299_LUNG	0.04	0.36	0.0573	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	MT-CO3--MT-ATP6	3	2	MT-CO3	1123	chrM:9329:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	YES	5	2	0.5	0.71	0.0344	0.0229	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1299_LUNG	0.5	0.71	0.0573	FALSE	189	492	56	216	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15492	3	0	0.62	0.0344	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	0.62	0.0573	FALSE	230	198	14	283	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19833	0	0	1	0.0344	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	1	0.0573	FALSE	231	217	16	283	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	21224	0	0	1	0.0344	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1299_LUNG	0	1	0.0573	FALSE	231	216	16	283	0	FALSE	ACH-000510
NCIH1299_LUNG	MT-ND4--MT-CO1	3	2	MT-ND4	1234	chrM:10993:+	MT-CO1	6016	chrM:6541:+	INCL_NON_REF_SPLICE	YES	15399	25408	0	0	0.0344	0.0229	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1299_LUNG	0	0	0.0573	FALSE	19	89	11	16	0	FALSE	ACH-000510
NCIH1299_LUNG	RAB28--ASTN2	3	2	RAB28	3476	chr4:13475942:-	ASTN2	24723	chr9:119739064:-	ONLY_REF_SPLICE	YES	75	0	0.06	1	0.0344	0.0229	RAB28->RAB28,_member_RAS_oncogene_family,chr4:13362978-13485989:-,ASTN2->Oncogene{Bushman},astrotactin_2,chr9:119187504-120177348:-	NCIH1299_LUNG	0.06	1	0.0573	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	97	1	0.05	0.0344	0.0229	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1299_LUNG	0.05	1	0.0573	TRUE	465	1949	224	605	0	FALSE	ACH-000510
NCIH1299_LUNG	CAPRIN2--RASSF8	2	5	CAPRIN2	5280	chr12:30893954:-	RASSF8	32255	chr12:26173078:+	ONLY_REF_SPLICE	YES	118	11	0.06	0.39	0.0229	0.0573	CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-,RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+	NCIH1299_LUNG	0.06	0.39	0.0802	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	KCTD8--SULT1E1	3	1	KCTD8	2245	chr4:44449580:-	SULT1E1	17198	chr4:70707824:-	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0344	0.0115	KCTD8->chr4:44175926-44450824:-,potassium_channel_tetramerization_domain_containing_8,SULT1E1->chr4:70676498-70725870:-,sulfotransferase_family_1E_member_1	NCIH1299_LUNG	0.8	1	0.0459	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	PBX3--MAPKAP1	3	1	PBX3	2279	chr9:128510902:+	MAPKAP1	31403	chr9:128348006:-	ONLY_REF_SPLICE	YES	202	847	0.02	0	0.0344	0.0115	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	NCIH1299_LUNG	0	0.02	0.0459	FALSE	0	2	0	5	0	FALSE	ACH-000510
NCIH1299_LUNG	PBX3--MAPKAP1	3	1	PBX3	2279	chr9:128510902:+	MAPKAP1	33948	chr9:128322088:-	ONLY_REF_SPLICE	YES	202	713	0.02	0.01	0.0344	0.0115	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	NCIH1299_LUNG	0.01	0.02	0.0459	FALSE	0	0	0	4	0	FALSE	ACH-000510
NCIH1299_LUNG	FAF1--GBP5	3	0	FAF1	1497	chr1:51425439:-	GBP5	40092	chr1:89728084:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0344	0	FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,GBP5->chr1:89724633-89738544:-,guanylate_binding_protein_5	NCIH1299_LUNG	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	IST1--NFE2L2	3	0	IST1	7895	chr16:71929492:+	NFE2L2	33358	chr2:178098999:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0344	0	IST1->IST1,_ESCRT-III_associated_factor,chr16:71879899-71962913:+,NFE2L2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:178092323-178257425:-,nuclear_factor,_erythroid_2_like_2	NCIH1299_LUNG	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1299_LUNG	1	1	0.0344	FALSE	499	1288	110	792	0	FALSE	ACH-000510
NCIH1299_LUNG	MYL6--EEF1D	3	0	MYL6	2462	chr12:56553406:+	EEF1D	20463	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0344	0	GTEx&tcga_normals:1/3694=0.03%,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	NCIH1299_LUNG	1	1	0.0344	TRUE	0	0	0	2	0	TRUE	ACH-000510
NCIH1299_LUNG	DSCR4--KCNJ6	2	2	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	6	0	0.4	1	0.0229	0.0229	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	NCIH1299_LUNG	0.4	1	0.0458	FALSE	0	24	0	27	0	FALSE	ACH-000510
NCIH1299_LUNG	ARID2--KCTD16	2	1	ARID2	2571	chr12:46125097:+	KCTD16	38629	chr5:143853223:+	ONLY_REF_SPLICE	YES	46	7	0.06	0.3	0.0229	0.0115	ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,KCTD16->chr5:143550396-143865249:+,potassium_channel_tetramerization_domain_containing_16	NCIH1299_LUNG	0.06	0.3	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	GCDH--POLR2E	2	1	GCDH	6681	chr19:13008677:+	POLR2E	16927	chr19:1091906:-	ONLY_REF_SPLICE	YES	33	653	0.08	0	0.0229	0.0115	GCDH->chr19:13001840-13025021:+,glutaryl-CoA_dehydrogenase,POLR2E->chr19:1086594-1095598:-,polymerase_(RNA)_II_subunit_E	NCIH1299_LUNG	0	0.08	0.0344	FALSE	0	0	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	KCTD8--SULT1E1	2	1	KCTD8	2245	chr4:44449580:-	SULT1E1	14922	chr4:70713510:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0.0115	KCTD8->chr4:44175926-44450824:-,potassium_channel_tetramerization_domain_containing_8,SULT1E1->chr4:70676498-70725870:-,sulfotransferase_family_1E_member_1	NCIH1299_LUNG	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	SPOP--TEX28	1	5	SPOP	1302	chr17:47755295:-	TEX28	24600	chrX:153520558:-	ONLY_REF_SPLICE	YES	76	0	0.07	1	0.0115	0.0573	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,TEX28->chrX:153498930-153523796:-,testis_expressed_28	NCIH1299_LUNG	0.07	1	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	SPOP--TEX28	1	5	SPOP	2424	chr17:47753257:-	TEX28	24600	chrX:153520558:-	ONLY_REF_SPLICE	YES	97	0	0.06	1	0.0115	0.0573	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,TEX28->chrX:153498930-153523796:-,testis_expressed_28	NCIH1299_LUNG	0.06	1	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	ACTR3--TTL	2	0	ACTR3	1364	chr2:114647900:+	TTL	35783	chr2:113286258:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	ACTR3->ARP3_actin-related_protein_3_homolog_(yeast),chr2:114647537-114720173:+,TTL->Oncogene{Bushman},chr2:113239731-113299316:+,tubulin_tyrosine_ligase	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	BDH1--DLG1	2	0	BDH1	2411	chr3:197282652:-	DLG1	36820	chr3:196869639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx&tcga_normals:1/3694=0.03%,BDH1->3-hydroxybutyrate_dehydrogenase,_type_1,chr3:197236654-197300194:-,DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	C8orf44--KDM1A	2	0	C8orf44	1087	chr8:67579936:+	KDM1A	32120	chr1:23409672:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	C8orf44->chr8:67579850-67597799:+,chromosome_8_open_reading_frame_44,KDM1A->chr1:23345941-23410182:+,lysine_demethylase_1A	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	CAPRIN2--RASSF8	1	4	CAPRIN2	4193	chr12:30904005:-	RASSF8	30075	chr12:26147970:+	ONLY_REF_SPLICE	NO	125	0	0.04	1	0.0115	0.0458	CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-,RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+	NCIH1299_LUNG	0.04	1	0.0573	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	CKAP5--MTCH2	2	0	CKAP5	9972	chr11:46829581:-	MTCH2	56997	chr11:47640471:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	FAF1--GBP5	2	0	FAF1	1497	chr1:51425439:-	GBP5	39708	chr1:89728468:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,GBP5->chr1:89724633-89738544:-,guanylate_binding_protein_5	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	LINC00472--RP4-583P15.15	2	0	LINC00472	1704	chr6:72129769:-	RP4-583P15.15	13505	chr20:62364571:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LINC00472->chr6:72054047-72130472:-,long_intergenic_non-protein_coding_RNA_472,RP4-583P15.15->chr20:62340216-62370456:+	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	LSM7--C21orf58	2	0	LSM7	1234	chr19:2328386:-	C21orf58	17160	chr21:47731481:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LSM7->LSM7_homolog,_U6_small_nuclear_RNA_and_mRNA_degradation_associated,chr19:2321516-2328619:-,C21orf58->chr21:47720095-47743789:-,chromosome_21_open_reading_frame_58	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	LUC7L2--TRIM24	2	0	LUC7L2	5589	chr7:139086993:+	TRIM24	24075	chr7:138223402:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+,TRIM24->Oncogene{Bushman},chr7:138145079-138274738:+,tripartite_motif_containing_24	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	MPP5--CRNDE	2	0	MPP5	18705	chr14:67790529:+	CRNDE	29005	chr16:54957562:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5,CRNDE->chr16:54952775-54963101:-,colorectal_neoplasia_differentially_expressed_(non-protein_coding)	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	RBM6--FAM192A	2	0	RBM6	3185	chr3:50000118:+	FAM192A	39832	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	RHNO1--DHDDS	2	0	RHNO1	2025	chr12:2986448:+	DHDDS	11322	chr1:26759382:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	RHNO1->RAD9-HUS1-RAD1_interacting_nuclear_orphan_1,chr12:2985424-2998626:+,DHDDS->chr1:26758773-26797785:+,dehydrodolichyl_diphosphate_synthase_subunit	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	RP11-548L20.1--RP11-79E3.3	2	0	RP11-548L20.1	2265	chr4:34260709:-	RP11-79E3.3	12416	chr4:33949146:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	NEIGHBORS[81001],RP11-548L20.1->chr4:34122516-34271369:-,RP11-79E3.3->chr4:33777969-34041515:-	NCIH1299_LUNG	1	1	0.0229	FALSE	2	10	2	7	0	FALSE	ACH-000510
NCIH1299_LUNG	TSPAN17--G3BP1	2	0	TSPAN17	1316	chr5:176074703:+	G3BP1	15337	chr5:151166133:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	TSPAN17->chr5:176074388-176086058:+,tetraspanin_17,G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+	NCIH1299_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	BDNF--LGR4	1	3	BDNF	6000	chr11:27721729:-	LGR4	19122	chr11:27434407:-	ONLY_REF_SPLICE	YES	19	1	0.17	0.8	0.0115	0.0344	BDNF->brain-derived_neurotrophic_factor,chr11:27676440-27743605:-,LGR4->chr11:27387508-27494322:-,leucine-rich_repeat_containing_G_protein-coupled_receptor_4	NCIH1299_LUNG	0.17	0.8	0.0459	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	UHRF1BP1L--ANKS1B	1	3	UHRF1BP1L	3566	chr12:100502164:-	ANKS1B	35926	chr12:100200478:-	ONLY_REF_SPLICE	NO	26	1	0.13	0.8	0.0115	0.0344	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[43801],UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	NCIH1299_LUNG	0.13	0.8	0.0459	FALSE	0	0	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	ASAP1--FAM49B	1	2	ASAP1	3357	chr8:131414131:-	FAM49B	54419	chr8:130916831:-	ONLY_REF_SPLICE	NO	75	434	0.04	0.01	0.0115	0.0229	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	NCIH1299_LUNG	0.01	0.04	0.0344	FALSE	0	0	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	IPPK--IARS	1	2	IPPK	12116	chr9:95396668:-	IARS	29411	chr9:95036803:-	ONLY_REF_SPLICE	NO	47	332	0.06	0.01	0.0115	0.0229	IPPK->chr9:95375466-95432547:-,inositol-pentakisphosphate_2-kinase,IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase	NCIH1299_LUNG	0.01	0.06	0.0344	FALSE	0	0	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	SPOP--TEX28	1	2	SPOP	1302	chr17:47755295:-	TEX28	26790	chrX:153516762:-	ONLY_REF_SPLICE	YES	76	0	0.04	1	0.0115	0.0229	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,TEX28->chrX:153498930-153523796:-,testis_expressed_28	NCIH1299_LUNG	0.04	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000510
NCIH1299_LUNG	ASAP1--FAM49B	1	1	ASAP1	7774	chr8:131370263:-	FAM49B	55506	chr8:130915596:-	ONLY_REF_SPLICE	YES	98	332	0.02	0.01	0.0115	0.0115	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	NCIH1299_LUNG	0.01	0.02	0.023	FALSE	0	0	0	2	0	FALSE	ACH-000510
NCIH1299_LUNG	AXL--PABPC1	1	1	AXL	10946	chr19:41749612:+	PABPC1	24081	chr8:101734117:-	ONLY_REF_SPLICE	YES	621	822	0	0	0.0115	0.0115	AXL->AXL_receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:41725108-41767671:+,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	NCIH1299_LUNG	0	0	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	BCL2L13--ATP6V1E1	1	1	BCL2L13	5215	chr22:18166087:+	ATP6V1E1	27041	chr22:18082861:-	ONLY_REF_SPLICE	NO	127	299	0.02	0.01	0.0115	0.0115	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},LOCAL_INVERSION:+:-:[37],BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,ATP6V1E1->ATPase_H+_transporting_V1_subunit_E1,chr22:18074902-18111584:-	NCIH1299_LUNG	0.01	0.02	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	CCDC43--BCAR1	1	1	CCDC43	1230	chr17:42766918:-	BCAR1	23623	chr16:75276988:-	ONLY_REF_SPLICE	YES	84	28	0.02	0.07	0.0115	0.0115	CCDC43->chr17:42750437-42767147:-,coiled-coil_domain_containing_43,BCAR1->BCAR1,_Cas_family_scaffolding_protein,chr16:75262928-75301951:-	NCIH1299_LUNG	0.02	0.07	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	DHX15--PPARGC1A	1	1	DHX15	20362	chr4:24531224:-	PPARGC1A	29600	chr4:23886554:-	ONLY_REF_SPLICE	YES	431	0	0	1	0.0115	0.0115	DHX15->DEAH-box_helicase_15,chr4:24519064-24586173:-,PPARGC1A->PPARG_coactivator_1_alpha,chr4:23756664-23905712:-	NCIH1299_LUNG	0	1	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	GLRX3--MYO10	1	1	GLRX3	2223	chr10:131943583:+	MYO10	40956	chr5:16711354:-	ONLY_REF_SPLICE	NO	665	101	0	0.02	0.0115	0.0115	GLRX3->chr10:131934663-131982785:+,glutaredoxin_3,MYO10->chr5:16665395-16936372:-,myosin_X	NCIH1299_LUNG	0	0.02	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	HNRNPA2B1--HEATR2	1	1	HNRNPA2B1	1958	chr7:26240192:-	HEATR2	26610	chr7:810108:+	ONLY_REF_SPLICE	YES	2200	226	0	0.01	0.0115	0.0115	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,HEATR2->chr7:766338-829190:+	NCIH1299_LUNG	0	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	LYRM4--RPP40	1	1	LYRM4	1292	chr6:5260881:-	RPP40	24922	chr6:5002479:-	ONLY_REF_SPLICE	YES	58	141	0.03	0.01	0.0115	0.0115	NEIGHBORS[98530],LYRM4->LYR_motif_containing_4,chr6:5102827-5261172:-,RPP40->chr6:4994966-5004297:-,ribonuclease_P/MRP_subunit_p40	NCIH1299_LUNG	0.01	0.03	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	MTAP--CDKN2A	1	1	MTAP	12211	chr9:21859424:+	CDKN2A	29087	chr9:21971207:-	ONLY_REF_SPLICE	YES	115	746	0.02	0	0.0115	0.0115	LOCAL_INVERSION:+:-:[36105],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A	NCIH1299_LUNG	0	0.02	0.023	FALSE	0	1	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	PARPBP--CCDC53	1	1	PARPBP	2470	chr12:102517819:+	CCDC53	27885	chr12:102439897:-	ONLY_REF_SPLICE	NO	83	100	0.02	0.02	0.0115	0.0115	LOCAL_INVERSION:+:-:[58029],PARPBP->PARP1_binding_protein,chr12:102513956-102591298:+,CCDC53->chr12:102406705-102455927:-,coiled-coil_domain_containing_53	NCIH1299_LUNG	0.02	0.02	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	PBX3--MAPKAP1	1	1	PBX3	2279	chr9:128510902:+	MAPKAP1	39526	chr9:128246862:-	ONLY_REF_SPLICE	YES	202	635	0.01	0	0.0115	0.0115	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	NCIH1299_LUNG	0	0.01	0.023	FALSE	0	0	0	2	0	FALSE	ACH-000510
NCIH1299_LUNG	PBX3--MAPKAP1	1	1	PBX3	2279	chr9:128510902:+	MAPKAP1	25785	chr9:128420078:-	ONLY_REF_SPLICE	YES	202	759	0.01	0	0.0115	0.0115	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	NCIH1299_LUNG	0	0.01	0.023	FALSE	0	0	0	3	0	FALSE	ACH-000510
NCIH1299_LUNG	SYNCRIP--EEF1A1	1	1	SYNCRIP	1996	chr6:86352515:-	EEF1A1	23586	chr6:74229779:-	ONLY_REF_SPLICE	YES	501	256	0	0.01	0.0115	0.0115	SYNCRIP->chr6:86318053-86353510:-,synaptotagmin_binding_cytoplasmic_RNA_interacting_protein,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	NCIH1299_LUNG	0	0.01	0.023	FALSE	1	0	0	1	0	FALSE	ACH-000510
NCIH1299_LUNG	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0.0115	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1299_LUNG	1	1	0.023	TRUE	62	24	1	171	0	FALSE	ACH-000510
NCIH1299_LUNG	TPM4--MFSD10	1	1	TPM4	3954	chr19:16187507:+	MFSD10	21655	chr4:2935671:-	ONLY_REF_SPLICE	YES	936	55	0	0.04	0.0115	0.0115	TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4,MFSD10->chr4:2932288-2936586:-,major_facilitator_superfamily_domain_containing_10	NCIH1299_LUNG	0	0.04	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000510
CAL51_BREAST	TIMM23B--LINC00843	81	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.9986	0.3452	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAL51_BREAST	0.98	1	1.3438	TRUE	508	994	45	981	0	FALSE	ACH-000856
CAL51_BREAST	MT-TA--MT-TC	55	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6781	0.0616	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL51_BREAST	1	1	0.7397	FALSE	462	80	0	856	0	FALSE	ACH-000856
CAL51_BREAST	TIMM23--RP11-464F9.1	42	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	256	9	0.15	0.84	0.5178	0.0493	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAL51_BREAST	0.15	0.84	0.5671	TRUE	519	3926	326	965	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND4--MT-ND4L	16	62	MT-ND4	1093	chrM:10852:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.1973	0.7644	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL51_BREAST	0.97	1	0.9617	FALSE	344	826	44	306	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND4--MT-ND4L	8	74	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	8	0	0.91	1	0.0986	0.9123	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL51_BREAST	0.91	1	1.0109	FALSE	344	826	44	306	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND4--MT-ND4L	3	76	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	12	0	0.87	1	0.037	0.937	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL51_BREAST	0.87	1	0.974	FALSE	344	826	44	306	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND4--MT-ND4L	8	54	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0986	0.6658	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL51_BREAST	0.97	1	0.7644	FALSE	344	821	44	306	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND6--MT-TE	21	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2589	0.0123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL51_BREAST	1	1	0.2712	FALSE	499	1288	110	792	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND4--MT-ND4L	4	52	MT-ND4	1205	chrM:10964:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	16	0	0.78	1	0.0493	0.6411	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL51_BREAST	0.78	1	0.6904	FALSE	344	826	44	306	0	FALSE	ACH-000856
CAL51_BREAST	MT-TA--MT-TC	15	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1849	0.0616	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL51_BREAST	1	1	0.2465	FALSE	462	80	0	856	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND4--MT-ND4L	3	45	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	56	0	0.46	1	0.037	0.5548	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL51_BREAST	0.46	1	0.5918	FALSE	344	827	44	306	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND6--MT-TE	13	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.85	1	0.1603	0.0493	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL51_BREAST	0.85	1	0.2096	FALSE	499	1288	110	792	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND6--MT-TE	13	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1603	0.0123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL51_BREAST	1	1	0.1726	FALSE	499	1288	110	792	0	FALSE	ACH-000856
CAL51_BREAST	ZNF654--HMGB2	13	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1603	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CAL51_BREAST	1	1	0.1603	TRUE	0	0	0	518	0	FALSE	ACH-000856
CAL51_BREAST	C15orf57--CBX3	9	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	53	78	0.3	0.23	0.111	0.1726	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CAL51_BREAST	0.23	0.3	0.2836	TRUE	267	562	48	632	0	FALSE	ACH-000856
CAL51_BREAST	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.111	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL51_BREAST	1	1	0.111	FALSE	462	80	0	856	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND4--MT-ND4L	5	12	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8771	0	0	1	0.0616	0.1479	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL51_BREAST	0	1	0.2095	FALSE	328	800	43	304	0	FALSE	ACH-000856
CAL51_BREAST	RP11-444D3.1--SOX5	7	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	7	1	0.61	0.0863	0.0493	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CAL51_BREAST	0.61	1	0.1356	TRUE	477	1352	189	275	0	FALSE	ACH-000856
CAL51_BREAST	MT-ATP6--MT-CO1	6	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	10923	0	0	1	0.074	0.037	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL51_BREAST	0	1	0.111	FALSE	182	97	9	327	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND4--MT-ND4L	5	7	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6255	0	0	1	0.0616	0.0863	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL51_BREAST	0	1	0.1479	FALSE	344	827	44	306	0	FALSE	ACH-000856
CAL51_BREAST	MT-CO3--MT-ATP6	3	14	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	1	4	0.94	0.81	0.037	0.1726	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAL51_BREAST	0.81	0.94	0.2096	FALSE	189	492	56	216	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND6--MT-TE	5	6	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.79	1	0.0616	0.074	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL51_BREAST	0.79	1	0.1356	FALSE	499	1288	110	792	0	FALSE	ACH-000856
CAL51_BREAST	ACTN4--MT-CO1	6	1	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	780	23019	0.01	0	0.074	0.0123	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL51_BREAST	0	0.01	0.0863	FALSE	0	0	0	30	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND6--MT-TE	5	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0.0616	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL51_BREAST	1	1	0.1232	FALSE	499	1288	110	792	0	FALSE	ACH-000856
CAL51_BREAST	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL51_BREAST	1	1	0.074	FALSE	183	104	9	328	0	FALSE	ACH-000856
CAL51_BREAST	MT-ATP6--MT-CO1	6	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL51_BREAST	1	1	0.074	FALSE	183	104	9	328	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND4--MT-ND4L	5	3	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	40	0	0.17	1	0.0616	0.037	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL51_BREAST	0.17	1	0.0986	FALSE	344	827	44	306	0	FALSE	ACH-000856
CAL51_BREAST	C15orf57--CBX3	3	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	51	81	0.19	0.13	0.037	0.111	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CAL51_BREAST	0.13	0.19	0.148	TRUE	267	562	48	632	0	FALSE	ACH-000856
CAL51_BREAST	MT-ATP6--MT-CO1	3	9	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2851	23795	0	0	0.037	0.111	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL51_BREAST	0	0	0.148	FALSE	183	104	9	328	0	FALSE	ACH-000856
CAL51_BREAST	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL51_BREAST	1	1	0.0616	FALSE	0	0	0	189	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND4--MT-ND4L	3	7	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	9	0	0.53	1	0.037	0.0863	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL51_BREAST	0.53	1	0.1233	FALSE	344	826	44	306	0	FALSE	ACH-000856
CAL51_BREAST	MT-CO3--MT-ATP6	3	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.037	0.074	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAL51_BREAST	0.82	1	0.111	FALSE	189	492	56	216	0	FALSE	ACH-000856
CAL51_BREAST	RP11-120D5.1--MID1	4	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	5	0.6	0.55	0.0493	0.0247	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CAL51_BREAST	0.55	0.6	0.074	FALSE	16	356	14	466	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND4--MT-ND4L	3	5	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0.0616	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL51_BREAST	1	1	0.0986	FALSE	344	821	44	306	0	FALSE	ACH-000856
CAL51_BREAST	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.45	0.0493	0.0123	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAL51_BREAST	0.45	1	0.0616	TRUE	458	1351	185	561	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND6--MT-TE	3	4	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.64	1	0.037	0.0493	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL51_BREAST	0.64	1	0.0863	FALSE	499	1288	110	792	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL51_BREAST	1	1	0.0493	FALSE	499	1288	110	792	0	FALSE	ACH-000856
CAL51_BREAST	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.037	0.0493	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL51_BREAST	0.88	1	0.0863	FALSE	515	4851	409	746	0	FALSE	ACH-000856
CAL51_BREAST	MT-ATP6--MT-CO1	3	1	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	10307	21191	0	0	0.037	0.0123	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL51_BREAST	0	0	0.0493	FALSE	183	104	9	328	0	FALSE	ACH-000856
CAL51_BREAST	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.037	0.0123	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL51_BREAST	0.8	1	0.0493	FALSE	292	1546	117	613	0	FALSE	ACH-000856
CAL51_BREAST	CALM3--MT-ND4L	3	0	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL51_BREAST	1	1	0.037	FALSE	1	1	0	107	0	FALSE	ACH-000856
CAL51_BREAST	KANSL1--LRRC37A	3	0	KANSL1	7536	chr17:44248221:-	LRRC37A	37753	chr17:44377160:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	CAL51_BREAST	1	1	0.037	TRUE	5	10	0	8	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL51_BREAST	1	1	0.037	FALSE	499	1288	110	792	0	FALSE	ACH-000856
CAL51_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL51_BREAST	1	1	0.037	FALSE	499	1288	110	792	0	FALSE	ACH-000856
CAL51_BREAST	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0.0986	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL51_BREAST	1	1	0.1109	FALSE	192	492	57	212	0	FALSE	ACH-000856
CAL51_BREAST	STX18-AS1--MSX1	2	1	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	8	804	0.27	0	0.0247	0.0123	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	CAL51_BREAST	0	0.27	0.037	FALSE	37	101	7	40	0	FALSE	ACH-000856
CAL51_BREAST	C17orf75--NME2	2	0	C17orf75	7662	chr17:30661794:-	NME2	20048	chr17:49244188:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	C17orf75->chr17:30651584-30677042:-,chromosome_17_open_reading_frame_75,NME2->NME/NM23_nucleoside_diphosphate_kinase_2,chr17:49230951-49249105:+	CAL51_BREAST	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000856
CAL51_BREAST	COL4A2--PHGDH	2	0	COL4A2	22951	chr13:111114731:+	PHGDH	55874	chr1:120263793:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2,PHGDH->chr1:120202421-120286838:+,phosphoglycerate_dehydrogenase	CAL51_BREAST	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000856
CAL51_BREAST	KIAA1524--IFT122	2	0	KIAA1524	1371	chr3:108308121:-	IFT122	49321	chr3:129214289:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	KIAA1524->KIAA1524,Oncogene{Bushman},chr3:108268716-108308491:-,IFT122->chr3:129158968-129239198:+,intraflagellar_transport_122	CAL51_BREAST	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000856
CAL51_BREAST	NRIP1--AF127936.7	1	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	46	0	0.1	1	0.0123	0.0493	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL51_BREAST	0.1	1	0.0616	FALSE	164	806	69	479	0	FALSE	ACH-000856
CAL51_BREAST	PLBD1--SCAF11	2	0	PLBD1	6045	chr12:14693698:-	SCAF11	26783	chr12:46345510:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	PLBD1->chr12:14656595-14721283:-,phospholipase_B_domain_containing_1,SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-	CAL51_BREAST	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000856
CAL51_BREAST	SIPA1L3--ZNF682	2	0	SIPA1L3	16017	chr19:38610522:+	ZNF682	40633	chr19:20141922:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,ZNF682->chr19:20107867-20150315:-,zinc_finger_protein_682	CAL51_BREAST	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000856
CAL51_BREAST	TIA1--LIG3	2	0	TIA1	7882	chr2:70451686:-	LIG3	25447	chr17:33317982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	TIA1->TIA1_cytotoxic_granule-associated_RNA_binding_protein,chr2:70436576-70475792:-,LIG3->DNA_ligase_3,chr17:33307513-33332083:+	CAL51_BREAST	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000856
CAL51_BREAST	UBR5--EIF3E	2	0	UBR5	1669	chr8:103424401:-	EIF3E	72291	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	CAL51_BREAST	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000856
CAL51_BREAST	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	7	1	0.36	0.0123	0.037	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CAL51_BREAST	0.36	1	0.0493	TRUE	274	363	69	150	0	FALSE	ACH-000856
CAL51_BREAST	NRIP1--AF127936.7	1	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	39	0	0.07	1	0.0123	0.0247	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL51_BREAST	0.07	1	0.037	FALSE	125	705	46	456	0	FALSE	ACH-000856
CAL51_BREAST	RB1--ITM2B	1	2	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	NO	54	1212	0.05	0	0.0123	0.0247	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	CAL51_BREAST	0	0.05	0.037	FALSE	53	73	8	19	0	FALSE	ACH-000856
CAL51_BREAST	RP11-120D5.1--MID1	1	2	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	0	5	1	0.38	0.0123	0.0247	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CAL51_BREAST	0.38	1	0.037	FALSE	2	31	0	60	0	FALSE	ACH-000856
CAL51_BREAST	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0.0247	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAL51_BREAST	1	1	0.037	FALSE	416	2512	207	587	0	FALSE	ACH-000856
CAL51_BREAST	CPSF6--C9orf3	1	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	235	55	0.01	0.04	0.0123	0.0123	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CAL51_BREAST	0.01	0.04	0.0246	FALSE	53	99	2	44	0	FALSE	ACH-000856
CAL51_BREAST	DEK--LMNB1	1	1	DEK	9509	chr6:18236683:-	LMNB1	18925	chr5:126141263:+	ONLY_REF_SPLICE	YES	684	525	0	0	0.0123	0.0123	DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-,LMNB1->chr5:126112315-126172712:+,lamin_B1	CAL51_BREAST	0	0	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000856
CAL51_BREAST	DLEU2--TRIM13	1	1	DLEU2	6919	chr13:50623720:-	TRIM13	18719	chr13:50586071:+	ONLY_REF_SPLICE	YES	40	90	0.05	0.02	0.0123	0.0123	LOCAL_INVERSION:-:+:[6652],DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),TRIM13->chr13:50570024-50594617:+,tripartite_motif_containing_13	CAL51_BREAST	0.02	0.05	0.0246	TRUE	0	0	0	1	0	FALSE	ACH-000856
CAL51_BREAST	HMGA2--LEMD3	1	1	HMGA2	5315	chr12:66232349:+	LEMD3	32866	chr12:65632282:+	ONLY_REF_SPLICE	NO	1219	79	0	0.02	0.0123	0.0123	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+	CAL51_BREAST	0	0.02	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000856
CAL51_BREAST	R3HDM1--UBXN4	1	1	R3HDM1	1179	chr2:136289203:+	UBXN4	40026	chr2:136505837:+	ONLY_REF_SPLICE	YES	67	275	0.03	0.01	0.0123	0.0123	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[16349],R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+,UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+	CAL51_BREAST	0.01	0.03	0.0246	FALSE	0	0	0	4	0	FALSE	ACH-000856
CAL51_BREAST	RP1-315G1.3--MIF4GD	1	1	RP1-315G1.3	1153	chrX:123095039:-	MIF4GD	6309	chr17:73266326:-	ONLY_REF_SPLICE	YES	1	19	0.67	0.1	0.0123	0.0123	RP1-315G1.3->chrX:123093083-123095191:-,MIF4GD->MIF4G_domain_containing,chr17:73262309-73267308:-	CAL51_BREAST	0.1	0.67	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000856
CAL51_BREAST	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	7	1	0.22	0.0123	0.0123	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	CAL51_BREAST	0.22	1	0.0246	FALSE	141	264	50	91	0	FALSE	ACH-000856
CAL51_BREAST	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	5	1483	0.29	0	0.0123	0.0123	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	CAL51_BREAST	0	0.29	0.0246	FALSE	0	59	0	125	0	FALSE	ACH-000856
CAL51_BREAST	SSH2--GIT1	1	1	SSH2	1339	chr17:28256956:-	GIT1	38200	chr17:27910634:-	ONLY_REF_SPLICE	NO	13	13	0.13	0.13	0.0123	0.0123	NEIGHBORS[31884],SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,GIT1->GIT_ArfGAP_1,chr17:27900487-27921072:-	CAL51_BREAST	0.13	0.13	0.0246	FALSE	0	0	0	2	0	FALSE	ACH-000856
SNU16_STOMACH	PVT1--SLC1A2	357	401	PVT1	18060	chr8:129022690:+	SLC1A2	32841	chr11:35339063:-	ONLY_REF_SPLICE	YES	58	6	0.93	0.99	4.2764	4.8035	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SNU16_STOMACH	0.93	0.99	9.0799	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	RP11-89K10.1--POU5F1B	329	52	RP11-89K10.1	1057	chr8:127570176:+	POU5F1B	14002	chr8:128427133:+	INCL_NON_REF_SPLICE	YES	9	13	0.98	0.97	3.941	0.6229	RP11-89K10.1->chr8:127570120-127725660:+,POU5F1B->POU_class_5_homeobox_1B,chr8:128426535-128432311:+	SNU16_STOMACH	0.97	0.98	4.5639	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	RP11-89K10.1--RP11-382A18.2	246	50	RP11-89K10.1	1057	chr8:127570176:+	RP11-382A18.2	13411	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	9	0	0.97	1	2.9468	0.5989	RP11-89K10.1->chr8:127570120-127725660:+,RP11-382A18.2->chr8:128351519-128404876:+	SNU16_STOMACH	0.97	1	3.5457	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	PVT1--SLC1A2	29	414	PVT1	18060	chr8:129022690:+	SLC1A2	31722	chr11:35344226:-	ONLY_REF_SPLICE	YES	58	0	0.88	1	0.3474	4.9592	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SNU16_STOMACH	0.88	1	5.3066	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	FGFR2--PPAPDC1A	83	111	FGFR2	24997	chr10:123256046:-	PPAPDC1A	38144	chr10:122263330:+	ONLY_REF_SPLICE	YES	6694	0	0.03	1	0.9942	1.3296	FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,PPAPDC1A->chr10:122216466-122349367:+	SNU16_STOMACH	0.03	1	2.3238	TRUE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	PVT1--SLC1A2	34	182	PVT1	17334	chr8:129021964:+	SLC1A2	32841	chr11:35339063:-	ONLY_REF_SPLICE	YES	111	6	0.66	0.97	0.4073	2.1801	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SNU16_STOMACH	0.66	0.97	2.5874	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	TIMM23B--LINC00843	68	41	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8146	0.4911	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU16_STOMACH	1	1	1.3057	TRUE	508	994	45	981	0	FALSE	ACH-000581
SNU16_STOMACH	MT-TA--MT-TC	65	13	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7786	0.1557	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU16_STOMACH	1	1	0.9343	FALSE	462	80	0	856	0	FALSE	ACH-000581
SNU16_STOMACH	PVT1--SLC1A2	42	76	PVT1	13955	chr8:129001537:+	SLC1A2	32841	chr11:35339063:-	ONLY_REF_SPLICE	YES	190	6	0.38	0.95	0.5031	0.9104	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SNU16_STOMACH	0.38	0.95	1.4135	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	CMIP--DYNLRB2	43	40	CMIP	23470	chr16:81733406:+	DYNLRB2	37029	chr16:80577173:+	ONLY_REF_SPLICE	YES	197	0	0.3	1	0.5151	0.4791	{Klijn_CCL:Stomach=1},CMIP->c-Maf_inducing_protein,chr16:81478775-81745367:+,DYNLRB2->chr16:80574631-80584657:+,dynein_light_chain_roadblock-type_2	SNU16_STOMACH	0.3	1	0.9942	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	TIMM23--RP11-464F9.1	45	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	298	16	0.14	0.75	0.539	0.0359	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU16_STOMACH	0.14	0.75	0.5749	TRUE	519	3926	326	965	0	FALSE	ACH-000581
SNU16_STOMACH	ZNF654--HMGB2	36	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4312	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU16_STOMACH	1	1	0.4312	TRUE	0	0	0	518	0	FALSE	ACH-000581
SNU16_STOMACH	NPM1P24--SET	23	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2755	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU16_STOMACH	1	1	0.2755	TRUE	0	0	0	434	0	FALSE	ACH-000581
SNU16_STOMACH	MT-CO3--MT-ATP6	15	29	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	4	0.9	0.92	0.1797	0.3474	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU16_STOMACH	0.9	0.92	0.5271	FALSE	189	492	56	216	0	FALSE	ACH-000581
SNU16_STOMACH	PVT1--SLC1A2	3	77	PVT1	13955	chr8:129001537:+	SLC1A2	31722	chr11:35344226:-	ONLY_REF_SPLICE	YES	190	0	0.3	1	0.0359	0.9224	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SNU16_STOMACH	0.3	1	0.9583	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	CSNK2A2--RP11-679B19.2	16	17	CSNK2A2	6669	chr16:58208355:-	RP11-679B19.2	22425	chr16:79246798:-	ONLY_REF_SPLICE	YES	183	2	0.15	0.94	0.1917	0.2036	CSNK2A2->casein_kinase_2_alpha_2,chr16:58191811-58231824:-,RP11-679B19.2->chr16:79246608-79263350:-	SNU16_STOMACH	0.15	0.94	0.3953	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	OR51S1--TP53I11	20	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2396	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU16_STOMACH	1	1	0.2396	TRUE	402	216	10	229	0	FALSE	ACH-000581
SNU16_STOMACH	MT-CO3--MT-ATP6	3	42	MT-CO3	1213	chrM:9419:+	MT-ATP6	4742	chrM:8484:+	INCL_NON_REF_SPLICE	YES	11	0	0.8	1	0.0359	0.5031	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU16_STOMACH	0.8	1	0.539	FALSE	189	492	56	216	0	FALSE	ACH-000581
SNU16_STOMACH	HSPBP1--GRK5	13	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1557	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU16_STOMACH	1	1	0.1557	TRUE	1	39	0	134	39	FALSE	ACH-000581
SNU16_STOMACH	MT-CO3--MT-ATP6	5	31	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	11	4	0.77	0.9	0.0599	0.3713	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU16_STOMACH	0.77	0.9	0.4312	FALSE	189	492	56	216	0	FALSE	ACH-000581
SNU16_STOMACH	PRR5L--AC015922.5	12	3	PRR5L	19160	chr11:36424928:+	AC015922.5	38221	chr17:15753738:+	ONLY_REF_SPLICE	YES	245	0	0.06	1	0.1437	0.0359	PRR5L->chr11:36317838-36486754:+,proline_rich_5_like,AC015922.5->chr17:15732683-15767467:+	SNU16_STOMACH	0.06	1	0.1796	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	SLC1A5--MT-ND4L	11	4	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1848	0	0.01	1	0.1318	0.0479	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU16_STOMACH	0.01	1	0.1797	FALSE	0	0	0	189	0	FALSE	ACH-000581
SNU16_STOMACH	MT-CO3--MT-ATP6	6	23	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	2	0.97	0.94	0.0719	0.2755	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU16_STOMACH	0.94	0.97	0.3474	FALSE	189	492	56	216	0	FALSE	ACH-000581
SNU16_STOMACH	MT-CO3--MT-ATP6	3	34	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	4	34	0.9	0.52	0.0359	0.4073	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU16_STOMACH	0.52	0.9	0.4432	FALSE	189	492	56	216	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	6	20	CD44	1501	chr11:35160917:+	PDHX	38371	chr11:34991686:+	ONLY_REF_SPLICE	YES	10283	5466	0	0	0.0719	0.2396	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0	0.3115	TRUE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	FTH1--ACTG1	11	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1318	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SNU16_STOMACH	1	1	0.1318	TRUE	0	0	0	64	0	FALSE	ACH-000581
SNU16_STOMACH	MT-CO3--MT-ATP6	5	23	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	21	0.97	0.57	0.0599	0.2755	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU16_STOMACH	0.57	0.97	0.3354	FALSE	189	492	56	216	0	FALSE	ACH-000581
SNU16_STOMACH	MT-TA--MT-TC	7	14	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0.1677	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU16_STOMACH	1	1	0.2516	FALSE	462	80	0	856	0	FALSE	ACH-000581
SNU16_STOMACH	MT-TA--MT-TC	6	17	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0.2036	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU16_STOMACH	1	1	0.2755	FALSE	462	80	0	856	0	FALSE	ACH-000581
SNU16_STOMACH	SCARB1--UBC	10	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	237	38	0.04	0.22	0.1198	0.012	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU16_STOMACH	0.04	0.22	0.1318	TRUE	55	66	6	101	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	3	28	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	10283	4671	0	0.01	0.0359	0.3354	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0.01	0.3713	TRUE	0	7	0	19	1	FALSE	ACH-000581
SNU16_STOMACH	MT-CO3--MT-ATP6	5	20	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	3	0.96	0.89	0.0599	0.2396	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU16_STOMACH	0.89	0.96	0.2995	FALSE	189	492	56	216	0	FALSE	ACH-000581
SNU16_STOMACH	NRIP1--AF127936.7	9	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.1078	0.012	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU16_STOMACH	0.77	1	0.1198	FALSE	292	1546	117	613	0	FALSE	ACH-000581
SNU16_STOMACH	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1078	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU16_STOMACH	1	1	0.1078	TRUE	0	0	0	434	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	1	29	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	13337	4671	0	0.01	0.012	0.3474	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0.01	0.3594	TRUE	0	20	0	35	2	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	3	21	CD44	1501	chr11:35160917:+	PDHX	37196	chr11:34988187:+	ONLY_REF_SPLICE	YES	10283	5017	0	0	0.0359	0.2516	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0	0.2875	TRUE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	1	28	CD44	4202	chr11:35201954:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	13011	4671	0	0.01	0.012	0.3354	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0.01	0.3474	TRUE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	MT-CO3--MT-ATP6	7	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	6	0	0.6	1	0.0839	0.024	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU16_STOMACH	0.6	1	0.1079	FALSE	189	492	56	216	0	FALSE	ACH-000581
SNU16_STOMACH	RP11-96H19.1--RP11-446N19.1	5	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0599	0.1198	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU16_STOMACH	0.88	1	0.1797	FALSE	515	4851	409	746	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	1	25	CD44	1501	chr11:35160917:+	PDHX	33796	chr11:34969053:+	ONLY_REF_SPLICE	YES	10283	5469	0	0	0.012	0.2995	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0	0.3115	TRUE	0	1	0	5	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	1	25	CD44	5271	chr11:35208447:+	PDHX	33796	chr11:34969053:+	ONLY_REF_SPLICE	NO	12465	5469	0	0	0.012	0.2995	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0	0.3115	TRUE	0	0	0	2	0	FALSE	ACH-000581
SNU16_STOMACH	EIF1--RPL5	7	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	SNU16_STOMACH	1	1	0.0839	TRUE	0	0	0	39	0	FALSE	ACH-000581
SNU16_STOMACH	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU16_STOMACH	1	1	0.0839	FALSE	462	80	0	856	0	FALSE	ACH-000581
SNU16_STOMACH	NPM1P4--NCL	7	0	NPM1P4	1488	chr13:28270854:-	NCL	10591	chr2:232325485:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	SNU16_STOMACH	1	1	0.0839	TRUE	0	0	0	3	0	TRUE	ACH-000581
SNU16_STOMACH	C15orf57--CBX3	5	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	113	41	0.09	0.21	0.0599	0.0719	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU16_STOMACH	0.09	0.21	0.1318	TRUE	267	562	48	632	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	1	22	CD44	21865	chr11:35243279:+	PDHX	37196	chr11:34988187:+	ONLY_REF_SPLICE	YES	14738	5017	0	0	0.012	0.2635	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0	0.2755	TRUE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	5	6	CD44	1501	chr11:35160917:+	PDHX	45504	chr11:35041755:+	ONLY_REF_SPLICE	YES	10283	98	0	0.1	0.0599	0.0719	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0.1	0.1318	TRUE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	APIP--RP11-103H7.3	6	1	APIP	1272	chr11:34937775:-	RP11-103H7.3	19463	chr8:127533145:+	ONLY_REF_SPLICE	YES	5167	0	0	1	0.0719	0.012	APIP->APAF1_interacting_protein,chr11:34874641-34938046:-,RP11-103H7.3->chr8:127530943-127534596:+	SNU16_STOMACH	0	1	0.0839	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	1	21	CD44	6502	chr11:35211612:+	PDHX	37196	chr11:34988187:+	ONLY_REF_SPLICE	NO	13337	5017	0	0	0.012	0.2516	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0	0.2636	TRUE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	1	21	CD44	1501	chr11:35160917:+	PDHX	36097	chr11:34981967:+	ONLY_REF_SPLICE	NO	10283	4144	0	0.01	0.012	0.2516	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0.01	0.2636	TRUE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	MT-CO3--MT-ATP6	4	9	MT-CO3	1020	chrM:9226:+	MT-ATP6	5076	chrM:8818:+	INCL_NON_REF_SPLICE	YES	0	13	1	0.5	0.0479	0.1078	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU16_STOMACH	0.5	1	0.1557	FALSE	189	492	56	216	0	FALSE	ACH-000581
SNU16_STOMACH	MT-CO3--MT-ATP6	5	5	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0599	0.0599	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU16_STOMACH	0.91	1	0.1198	FALSE	189	492	56	216	0	FALSE	ACH-000581
SNU16_STOMACH	MT-TA--MT-TY	6	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU16_STOMACH	1	1	0.0719	FALSE	13	214	14	42	0	FALSE	ACH-000581
SNU16_STOMACH	NPM1P4--NCL	6	0	NPM1P4	1484	chr13:28270858:-	NCL	10584	chr2:232325492:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	SNU16_STOMACH	1	1	0.0719	TRUE	0	0	0	3	0	TRUE	ACH-000581
SNU16_STOMACH	TPD52L2--RTEL1	4	7	TPD52L2	4497	chr20:62507228:+	RTEL1	29431	chr20:62316876:+	ONLY_REF_SPLICE	YES	564	36	0.02	0.23	0.0479	0.0839	TPD52L2->chr20:62496596-62522898:+,tumor_protein_D52_like_2,RTEL1->chr20:62289163-62328416:+,regulator_of_telomere_elongation_helicase_1	SNU16_STOMACH	0.02	0.23	0.1318	TRUE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	TRIM44--RP11-159D8.1	5	3	TRIM44	6427	chr11:35756993:+	RP11-159D8.1	13399	chr11:37972291:+	ONLY_REF_SPLICE	YES	404	0	0.02	1	0.0599	0.0359	TRIM44->chr11:35684353-35829775:+,tripartite_motif_containing_44,RP11-159D8.1->chr11:37960151-37976213:+	SNU16_STOMACH	0.02	1	0.0958	TRUE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	4	6	CD44	4202	chr11:35201954:+	PDHX	45504	chr11:35041755:+	ONLY_REF_SPLICE	YES	13011	98	0	0.09	0.0479	0.0719	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0.09	0.1198	TRUE	0	1	0	1	1	FALSE	ACH-000581
SNU16_STOMACH	FGFR2--PPAPDC1A	4	6	FGFR2	10266	chr10:123298106:-	PPAPDC1A	46691	chr10:122348815:+	ONLY_REF_SPLICE	YES	5740	155	0	0.06	0.0479	0.0719	FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,PPAPDC1A->chr10:122216466-122349367:+	SNU16_STOMACH	0	0.06	0.1198	TRUE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	TMEM54--MT-CO2	5	2	TMEM54	2326	chr1:33363811:-	MT-CO2	8517	chrM:7597:+	INCL_NON_REF_SPLICE	YES	1626	0	0	1	0.0599	0.024	TMEM54->chr1:33360195-33367039:-,transmembrane_protein_54,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU16_STOMACH	0	1	0.0839	FALSE	0	0	0	10	0	FALSE	ACH-000581
SNU16_STOMACH	EEF2--RPS28	5	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	8707	0	0	1	0.0599	0.012	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SNU16_STOMACH	0	1	0.0719	FALSE	0	0	0	100	0	FALSE	ACH-000581
SNU16_STOMACH	FGFR2--PPAPDC1A	1	16	FGFR2	24997	chr10:123256046:-	PPAPDC1A	42533	chr10:122334643:+	ONLY_REF_SPLICE	NO	6694	127	0	0.12	0.012	0.1917	FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,PPAPDC1A->chr10:122216466-122349367:+	SNU16_STOMACH	0	0.12	0.2037	TRUE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	1	14	CD44	5271	chr11:35208447:+	PDHX	39859	chr11:34999671:+	ONLY_REF_SPLICE	NO	12465	4853	0	0	0.012	0.1677	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0	0.1797	TRUE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	1	14	CD44	6502	chr11:35211612:+	PDHX	39859	chr11:34999671:+	ONLY_REF_SPLICE	NO	13337	4853	0	0	0.012	0.1677	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0	0.1797	TRUE	0	0	0	3	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	1	14	CD44	1501	chr11:35160917:+	PDHX	40918	chr11:35006117:+	ONLY_REF_SPLICE	YES	10283	4696	0	0	0.012	0.1677	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0	0.1797	TRUE	0	2	0	7	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	1	14	CD44	1501	chr11:35160917:+	PDHX	39859	chr11:34999671:+	ONLY_REF_SPLICE	YES	10283	4853	0	0	0.012	0.1677	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0	0.1797	TRUE	0	0	0	3	0	FALSE	ACH-000581
SNU16_STOMACH	MT-CO3--MT-ATP6	3	6	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0359	0.0719	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU16_STOMACH	0.9	1	0.1078	FALSE	189	492	56	216	0	FALSE	ACH-000581
SNU16_STOMACH	EEF2--AP3D1	4	1	EEF2	7086	chr19:3979382:-	AP3D1	21616	chr19:2129338:-	INCL_NON_REF_SPLICE	NO	10193	437	0	0.01	0.0479	0.012	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	SNU16_STOMACH	0	0.01	0.0599	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	YWHAZ--HRSP12	3	5	YWHAZ	5288	chr8:101960824:-	HRSP12	22317	chr8:99120979:-	ONLY_REF_SPLICE	YES	4833	226	0	0.03	0.0359	0.0599	{Klijn_CCL:Stomach=1},YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta,HRSP12->chr8:99114572-99129469:-	SNU16_STOMACH	0	0.03	0.0958	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	NADK--MT-CO2	4	0	NADK	12483	chr1:1685564:-	MT-CO2	18445	chrM:7654:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	NADK->NAD_kinase,chr1:1682671-1711896:-,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU16_STOMACH	1	1	0.0479	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	WTAPP1--RUVBL1	4	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0479	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	SNU16_STOMACH	1	1	0.0479	TRUE	9	252	6	66	0	FALSE	ACH-000581
SNU16_STOMACH	MT-TA--MT-TY	3	3	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0.0359	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU16_STOMACH	1	1	0.0718	FALSE	13	214	14	42	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	1	10	CD44	1501	chr11:35160917:+	PDHX	42230	chr11:35013862:+	ONLY_REF_SPLICE	YES	10283	4899	0	0	0.012	0.1198	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0	0.1318	TRUE	0	0	0	3	0	FALSE	ACH-000581
SNU16_STOMACH	MT-TA--MT-TY	3	2	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0.024	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU16_STOMACH	1	1	0.0599	FALSE	13	214	14	42	0	FALSE	ACH-000581
SNU16_STOMACH	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.012	0.1198	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU16_STOMACH	1	1	0.1318	FALSE	467	2173	244	435	0	FALSE	ACH-000581
SNU16_STOMACH	XPO5--SUPT3H	3	2	XPO5	13816	chr6:43523573:-	SUPT3H	50415	chr6:44797594:-	ONLY_REF_SPLICE	YES	201	4	0.02	0.56	0.0359	0.024	XPO5->chr6:43490072-43543812:-,exportin_5,SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-	SNU16_STOMACH	0.02	0.56	0.0599	TRUE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	ZC3H12D--UST	3	1	ZC3H12D	4889	chr6:149782967:-	UST	17858	chr6:149208122:+	ONLY_REF_SPLICE	YES	0	8	1	0.33	0.0359	0.012	{Klijn_CCL:Stomach=1},ZC3H12D->chr6:149768794-149806197:-,zinc_finger_CCCH-type_containing_12D,UST->chr6:149068464-149398126:+,uronyl_2-sulfotransferase	SNU16_STOMACH	0.33	1	0.0479	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	FGFR2--PPAPDC1A	1	8	FGFR2	29001	chr10:123243212:-	PPAPDC1A	46691	chr10:122348815:+	ONLY_REF_SPLICE	YES	8176	155	0	0.05	0.012	0.0958	FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,PPAPDC1A->chr10:122216466-122349367:+	SNU16_STOMACH	0	0.05	0.1078	TRUE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	FTH1--ACTG1	3	0	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SNU16_STOMACH	1	1	0.0359	TRUE	0	0	0	64	0	FALSE	ACH-000581
SNU16_STOMACH	HSPBP1--GRK5	3	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU16_STOMACH	1	1	0.0359	TRUE	1	39	0	134	39	FALSE	ACH-000581
SNU16_STOMACH	IRX5--CDYL2	3	0	IRX5	3995	chr16:54967768:+	CDYL2	9836	chr16:80719026:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	IRX5->chr16:54964774-54968397:+,iroquois_homeobox_5,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	SNU16_STOMACH	1	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU16_STOMACH	1	1	0.0359	FALSE	189	492	56	216	0	FALSE	ACH-000581
SNU16_STOMACH	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU16_STOMACH	1	1	0.0359	FALSE	189	492	56	216	0	FALSE	ACH-000581
SNU16_STOMACH	NPM1P4--NCL	3	0	NPM1P4	1488	chr13:28270854:-	NCL	9681	chr2:232326395:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	SNU16_STOMACH	1	1	0.0359	TRUE	0	0	0	3	0	TRUE	ACH-000581
SNU16_STOMACH	SLC1A5--MT-ND4L	3	0	SLC1A5	6504	chr19:47281994:-	MT-ND4L	12948	chrM:10555:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU16_STOMACH	1	1	0.0359	FALSE	0	0	0	189	0	FALSE	ACH-000581
SNU16_STOMACH	YWHAZ--HRSP12	2	4	YWHAZ	5288	chr8:101960824:-	HRSP12	23728	chr8:99118554:-	ONLY_REF_SPLICE	YES	4833	217	0	0.03	0.024	0.0479	{Klijn_CCL:Stomach=1},YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta,HRSP12->chr8:99114572-99129469:-	SNU16_STOMACH	0	0.03	0.0719	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	FGFR2--PPAPDC1A	1	7	FGFR2	9142	chr10:123310804:-	PPAPDC1A	42533	chr10:122334643:+	ONLY_REF_SPLICE	NO	4860	127	0	0.06	0.012	0.0839	FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,PPAPDC1A->chr10:122216466-122349367:+	SNU16_STOMACH	0	0.06	0.0959	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	FGFR2--PPAPDC1A	1	7	FGFR2	9142	chr10:123310804:-	PPAPDC1A	38144	chr10:122263330:+	ONLY_REF_SPLICE	YES	4860	0	0	1	0.012	0.0839	FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,PPAPDC1A->chr10:122216466-122349367:+	SNU16_STOMACH	0	1	0.0959	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	FGFR2--PPAPDC1A	1	7	FGFR2	10266	chr10:123298106:-	PPAPDC1A	43704	chr10:122340410:+	ONLY_REF_SPLICE	YES	5740	205	0	0.04	0.012	0.0839	FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,PPAPDC1A->chr10:122216466-122349367:+	SNU16_STOMACH	0	0.04	0.0959	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	1	6	CD44	6502	chr11:35211612:+	PDHX	45504	chr11:35041755:+	ONLY_REF_SPLICE	YES	13337	98	0	0.07	0.012	0.0719	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0.07	0.0839	FALSE	0	0	0	2	0	FALSE	ACH-000581
SNU16_STOMACH	CD44--PDHX	1	6	CD44	16863	chr11:35231601:+	PDHX	45504	chr11:35041755:+	ONLY_REF_SPLICE	NO	14226	98	0	0.07	0.012	0.0719	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU16_STOMACH	0	0.07	0.0839	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	XPO5--SUPT3H	2	2	XPO5	13816	chr6:43523573:-	SUPT3H	50396	chr6:44797613:-	ONLY_REF_SPLICE	YES	201	6	0.02	0.4	0.024	0.024	XPO5->chr6:43490072-43543812:-,exportin_5,SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-	SNU16_STOMACH	0.02	0.4	0.048	TRUE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	COPS2--GALK2	2	1	COPS2	1137	chr15:49447722:-	GALK2	37856	chr15:49584524:+	ONLY_REF_SPLICE	YES	4	123	0.43	0.02	0.024	0.012	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Brain_-_Frontal_Cortex_(BA9)=1,Esophagus_-_Gastroesophageal_Junction=1},NEIGHBORS_OVERLAP:-:+:[5],COPS2->COP9_signalosome_subunit_2,Oncogene{Bushman},chr15:49398268-49447858:-,GALK2->chr15:49447853-49660066:+,galactokinase_2	SNU16_STOMACH	0.02	0.43	0.036	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	COPS2--GALK2	2	1	COPS2	1137	chr15:49447722:-	GALK2	39928	chr15:49611169:+	ONLY_REF_SPLICE	YES	4	135	0.43	0.02	0.024	0.012	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Brain_-_Frontal_Cortex_(BA9)=1,Esophagus_-_Gastroesophageal_Junction=1},NEIGHBORS_OVERLAP:-:+:[5],COPS2->COP9_signalosome_subunit_2,Oncogene{Bushman},chr15:49398268-49447858:-,GALK2->chr15:49447853-49660066:+,galactokinase_2	SNU16_STOMACH	0.02	0.43	0.036	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	NCOR2--UBC	2	1	NCOR2	21671	chr12:124882665:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	225	38	0.01	0.07	0.024	0.012	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU16_STOMACH	0.01	0.07	0.036	FALSE	30	26	0	16	0	FALSE	ACH-000581
SNU16_STOMACH	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	18	0	0.14	1	0.024	0.012	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU16_STOMACH	0.14	1	0.036	FALSE	164	806	69	479	0	FALSE	ACH-000581
SNU16_STOMACH	BLCAP--TGIF2	2	0	BLCAP	1139	chr20:36156195:-	TGIF2	18097	chr20:35207144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	BLCAP->Oncogene{Bushman},bladder_cancer_associated_protein,chr20:36120874-36156333:-,TGIF2->TGFB_induced_factor_homeobox_2,chr20:35201891-35222353:+	SNU16_STOMACH	1	1	0.024	TRUE	0	2	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	SNU16_STOMACH	1	1	0.024	TRUE	2	8	0	24	0	FALSE	ACH-000581
SNU16_STOMACH	ELMOD3--WBSCR22	2	0	ELMOD3	1777	chr2:85582293:+	WBSCR22	22038	chr7:73100966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	ELMOD3->ELMO_domain_containing_3,chr2:85581517-85618875:+,WBSCR22->Williams-Beuren_syndrome_chromosome_region_22,chr7:73097355-73119491:+	SNU16_STOMACH	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	EXPH5--GNAS	2	0	EXPH5	1321	chr11:108464145:-	GNAS	38571	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	EXPH5->chr11:108376158-108464465:-,exophilin_5,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNU16_STOMACH	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	FAM122B--NDUFB2	2	0	FAM122B	8335	chrX:133915851:-	NDUFB2	22114	chr7:140402666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	FAM122B->chrX:133903596-133931262:-,family_with_sequence_similarity_122B,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	SNU16_STOMACH	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000581
SNU16_STOMACH	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SNU16_STOMACH	1	1	0.024	TRUE	53	396	64	110	0	FALSE	ACH-000581
SNU16_STOMACH	XKR9--LACTB2	2	0	XKR9	1174	chr8:71581773:+	LACTB2	20001	chr8:71556478:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	LOCAL_INVERSION:+:-:[191],XKR9->XK_related_9,chr8:71581600-71702606:+,LACTB2->chr8:71547553-71581409:-,lactamase_beta_2	SNU16_STOMACH	1	1	0.024	TRUE	0	11	0	8	7	TRUE	ACH-000581
SNU16_STOMACH	SPECC1--PRR5L	1	3	SPECC1	13468	chr17:20059549:+	PRR5L	52500	chr11:36415396:+	ONLY_REF_SPLICE	YES	8	189	0.33	0.02	0.012	0.0359	SPECC1->Oncogene{Bushman},chr17:19912657-20222339:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	SNU16_STOMACH	0.02	0.33	0.0479	TRUE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	FGFR2--PPAPDC1A	1	2	FGFR2	7794	chr10:123324016:-	PPAPDC1A	46691	chr10:122348815:+	ONLY_REF_SPLICE	YES	8250	155	0	0.02	0.012	0.024	FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,PPAPDC1A->chr10:122216466-122349367:+	SNU16_STOMACH	0	0.02	0.036	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	FGFR2--PPAPDC1A	1	2	FGFR2	4111	chr10:123353223:-	PPAPDC1A	38144	chr10:122263330:+	ONLY_REF_SPLICE	YES	8468	0	0	1	0.012	0.024	FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,PPAPDC1A->chr10:122216466-122349367:+	SNU16_STOMACH	0	1	0.036	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.012	0.024	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU16_STOMACH	1	1	0.036	TRUE	62	24	1	171	0	FALSE	ACH-000581
SNU16_STOMACH	APIP--RP11-103H7.3	1	1	APIP	8112	chr11:34904223:-	RP11-103H7.3	19463	chr8:127533145:+	ONLY_REF_SPLICE	YES	3263	0	0	1	0.012	0.012	APIP->APAF1_interacting_protein,chr11:34874641-34938046:-,RP11-103H7.3->chr8:127530943-127534596:+	SNU16_STOMACH	0	1	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	ARHGEF38--PPA2	1	1	ARHGEF38	1342	chr4:106474118:+	PPA2	32366	chr4:106377902:-	ONLY_REF_SPLICE	NO	29	597	0.06	0	0.012	0.012	GTEx_v2:{count=2;pct=0.02%;dist=Small_Intestine_-_Terminal_Ileum=1,Pancreas=1},LOCAL_INVERSION:+:-:[78539],ARHGEF38->Rho_guanine_nucleotide_exchange_factor_38,chr4:106473777-106629250:+,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	SNU16_STOMACH	0	0.06	0.024	FALSE	0	4	1	2	0	FALSE	ACH-000581
SNU16_STOMACH	ATR--U2SURP	1	1	ATR	3414	chr3:142284963:-	U2SURP	75627	chr3:142751626:+	ONLY_REF_SPLICE	YES	27	219	0.07	0.01	0.012	0.012	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Vagina=1},ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	SNU16_STOMACH	0.01	0.07	0.024	FALSE	0	10	0	10	7	FALSE	ACH-000581
SNU16_STOMACH	COPS2--GALK2	1	1	COPS2	1137	chr15:49447722:-	GALK2	33365	chr15:49528048:+	ONLY_REF_SPLICE	YES	4	158	0.33	0.01	0.012	0.012	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Brain_-_Frontal_Cortex_(BA9)=1,Esophagus_-_Gastroesophageal_Junction=1},NEIGHBORS_OVERLAP:-:+:[5],COPS2->COP9_signalosome_subunit_2,Oncogene{Bushman},chr15:49398268-49447858:-,GALK2->chr15:49447853-49660066:+,galactokinase_2	SNU16_STOMACH	0.01	0.33	0.024	FALSE	0	2	0	2	0	FALSE	ACH-000581
SNU16_STOMACH	DNAJC24--IMMP1L	1	1	DNAJC24	2020	chr11:31392406:+	IMMP1L	34941	chr11:31455117:-	ONLY_REF_SPLICE	NO	129	22	0.02	0.08	0.012	0.012	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Nerve_-_Tibial=2,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Pancreas=1},LOCAL_INVERSION:+:-:[552],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	SNU16_STOMACH	0.02	0.08	0.024	TRUE	0	4	0	9	1	FALSE	ACH-000581
SNU16_STOMACH	EEF2--AP3D1	1	1	EEF2	6662	chr19:3979806:-	AP3D1	23916	chr19:2123878:-	ONLY_REF_SPLICE	YES	9986	417	0	0	0.012	0.012	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	SNU16_STOMACH	0	0	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	GNGT1--AC002076.10	1	1	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.012	0.012	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	SNU16_STOMACH	0.67	1	0.024	FALSE	0	28	0	37	0	FALSE	ACH-000581
SNU16_STOMACH	NCOR2--TBC1D9B	1	1	NCOR2	30035	chr12:124846672:-	TBC1D9B	69781	chr5:179306789:-	ONLY_REF_SPLICE	YES	166	154	0.01	0.01	0.012	0.012	NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,TBC1D9B->TBC1_domain_family_member_9B,chr5:179289066-179334859:-	SNU16_STOMACH	0.01	0.01	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	PSPH--GBAS	1	1	PSPH	1467	chr7:56118831:-	GBAS	17996	chr7:56045819:+	ONLY_REF_SPLICE	YES	109	131	0.02	0.02	0.012	0.012	LOCAL_INVERSION:-:+:[10870],PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase,GBAS->chr7:56019486-56067874:+,glioblastoma_amplified_sequence	SNU16_STOMACH	0.02	0.02	0.024	TRUE	0	1	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	PVT1--SLC1A2	1	1	PVT1	1202	chr8:128806980:+	SLC1A2	39915	chr11:35308498:-	ONLY_REF_SPLICE	NO	1202	631	0	0	0.012	0.012	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SNU16_STOMACH	0	0	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	STAG2--CNOT10	1	1	STAG2	8693	chrX:123159768:+	CNOT10	65678	chr3:32800950:+	ONLY_REF_SPLICE	YES	256	222	0.01	0.01	0.012	0.012	STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,CNOT10->CCR4-NOT_transcription_complex_subunit_10,chr3:32726637-32815367:+	SNU16_STOMACH	0.01	0.01	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	WDR34--SPTAN1	1	1	WDR34	2496	chr9:131402970:-	SPTAN1	32669	chr9:131362359:+	ONLY_REF_SPLICE	NO	858	299	0	0.01	0.012	0.012	NEIGHBORS_OVERLAP:-:+:[1],WDR34->WD_repeat_domain_34,chr9:131395940-131419066:-,SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1	SNU16_STOMACH	0	0.01	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000581
SNU16_STOMACH	ZSWIM7--WDR11	1	1	ZSWIM7	5098	chr17:15890114:-	WDR11	32736	chr10:122646201:+	ONLY_REF_SPLICE	YES	113	6674	0.02	0	0.012	0.012	ZSWIM7->chr17:15879874-15903031:-,zinc_finger_SWIM-type_containing_7,WDR11->Oncogene{Bushman},WD_repeat_domain_11,chr10:122610687-122669036:+	SNU16_STOMACH	0	0.02	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000581
59M_OVARY	RB1CC1--CTD-3025N20.2	348	100	RB1CC1	2687	chr8:53626635:-	CTD-3025N20.2	31484	chr8:66447099:-	ONLY_REF_SPLICE	YES	35	0	0.93	1	3.9972	1.1486	RB1CC1->Oncogene{Bushman},RB1_inducible_coiled-coil_1,chr8:53535016-53658403:-,CTD-3025N20.2->chr8:66439243-66475015:-	59M_OVARY	0.93	1	5.1458	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	AP003900.6--AC011718.2	218	37	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	1	0	1	1	2.504	0.425	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	59M_OVARY	1	1	2.929	TRUE	0	3	0	38	3	FALSE	ACH-000520
59M_OVARY	SPIDR--FAM49B	103	68	SPIDR	7740	chr8:48206619:+	FAM49B	55678	chr8:130867993:-	ONLY_REF_SPLICE	YES	75	195	0.7	0.47	1.1831	0.7811	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	59M_OVARY	0.47	0.7	1.9642	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	TIMM23B--LINC00843	110	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2635	0.3216	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	59M_OVARY	1	1	1.5851	TRUE	508	994	45	981	0	FALSE	ACH-000520
59M_OVARY	FAM60A--DENND5B	81	8	FAM60A	2035	chr12:31478958:-	DENND5B	40679	chr12:31555577:-	ONLY_REF_SPLICE	YES	54	26	0.62	0.77	0.9304	0.0919	LOCAL_REARRANGEMENT:-:[55165],FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,DENND5B->DENN_domain_containing_5B,chr12:31535157-31744031:-	59M_OVARY	0.62	0.77	1.0223	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	SPIDR--FAM49B	74	33	SPIDR	6576	chr8:48203726:+	FAM49B	55678	chr8:130867993:-	ONLY_REF_SPLICE	YES	73	195	0.59	0.35	0.85	0.379	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	59M_OVARY	0.35	0.59	1.229	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	TIMM23--RP11-464F9.1	72	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	406	6	0.16	0.93	0.827	0.0804	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	59M_OVARY	0.16	0.93	0.9074	TRUE	519	3926	326	965	0	FALSE	ACH-000520
59M_OVARY	ARID1A--ATPIF1	56	7	ARID1A	2508	chr1:27024031:+	ATPIF1	29461	chr1:28573100:+	ONLY_REF_SPLICE	YES	5	0	0.93	1	0.6432	0.0804	ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,ATPIF1->ATPase_inhibitory_factor_1,chr1:28562620-28573417:+	59M_OVARY	0.93	1	0.7236	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	RP11-680G10.1--GSE1	39	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	47	1	0.46	0.448	0.0115	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	59M_OVARY	0.46	1	0.4595	TRUE	465	1949	224	605	0	FALSE	ACH-000520
59M_OVARY	HNRNPR--TCEA3	35	7	HNRNPR	8792	chr1:23644976:-	TCEA3	31793	chr1:23713912:-	ONLY_REF_SPLICE	YES	410	18	0.09	0.7	0.402	0.0804	LOCAL_REARRANGEMENT:-:[36725],HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,TCEA3->chr1:23707554-23751233:-,transcription_elongation_factor_A3	59M_OVARY	0.09	0.7	0.4824	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	FTH1--ACTG1	34	5	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	7480	0	0.01	1	0.3905	0.0574	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	59M_OVARY	0.01	1	0.4479	TRUE	0	0	0	64	0	FALSE	ACH-000520
59M_OVARY	MT-TA--MT-TC	32	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3676	0.0345	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	59M_OVARY	1	1	0.4021	FALSE	462	80	0	856	0	FALSE	ACH-000520
59M_OVARY	ZNF654--HMGB2	27	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3101	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	59M_OVARY	1	1	0.3101	TRUE	0	0	0	518	0	FALSE	ACH-000520
59M_OVARY	FTH1--ACTG1	25	4	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	7346	0	0	1	0.2872	0.0459	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	59M_OVARY	0	1	0.3331	TRUE	0	0	0	64	0	FALSE	ACH-000520
59M_OVARY	ARID3A--TMEM259	23	8	ARID3A	6959	chr19:960164:+	TMEM259	22250	chr19:1014472:-	ONLY_REF_SPLICE	YES	3	47	0.91	0.4	0.2642	0.0919	LOCAL_INVERSION:+:-:[33708],ARID3A->AT-rich_interaction_domain_3A,chr19:925781-975939:+,TMEM259->chr19:1009647-1021117:-,transmembrane_protein_259	59M_OVARY	0.4	0.91	0.3561	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	AP003900.6--AC011718.2	20	18	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.2297	0.2068	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	59M_OVARY	0.97	1	0.4365	TRUE	0	1	0	26	1	FALSE	ACH-000520
59M_OVARY	MT-ATP6--MT-CO1	24	0	MT-ATP6	1018	chrM:8544:+	MT-CO1	5856	chrM:7078:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2757	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	59M_OVARY	1	1	0.2757	FALSE	183	104	9	328	0	FALSE	ACH-000520
59M_OVARY	AP003900.6--AC011718.2	20	11	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	1	10	0.97	0.76	0.2297	0.1263	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	59M_OVARY	0.76	0.97	0.356	TRUE	0	1	0	21	1	FALSE	ACH-000520
59M_OVARY	MT-ND6--MT-TE	20	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.2297	0.0115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	59M_OVARY	0.95	1	0.2412	FALSE	499	1288	110	792	0	FALSE	ACH-000520
59M_OVARY	RP11-680G10.1--GSE1	19	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	22	1	0.52	0.2182	0.0574	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	59M_OVARY	0.52	1	0.2756	TRUE	458	1351	185	561	0	FALSE	ACH-000520
59M_OVARY	YWHAE--PITPNA	18	4	YWHAE	1332	chr17:1303341:-	PITPNA	27439	chr17:1424939:-	ONLY_REF_SPLICE	YES	1782	130	0.01	0.14	0.2068	0.0459	{Klijn_CCL:Lung=1},YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,PITPNA->chr17:1421012-1466110:-,phosphatidylinositol_transfer_protein_alpha	59M_OVARY	0.01	0.14	0.2527	TRUE	0	2	0	1	2	TRUE	ACH-000520
59M_OVARY	AP003900.6--AC011718.2	8	40	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	6	0	0.89	1	0.0919	0.4595	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	59M_OVARY	0.89	1	0.5514	TRUE	0	5	0	45	5	FALSE	ACH-000520
59M_OVARY	MT-ND6--MT-TE	13	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1493	0.0574	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	59M_OVARY	0.95	1	0.2067	FALSE	499	1288	110	792	0	FALSE	ACH-000520
59M_OVARY	MT-ND6--MT-TE	13	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1493	0.0115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	59M_OVARY	0.93	1	0.1608	FALSE	499	1288	110	792	0	FALSE	ACH-000520
59M_OVARY	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1263	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	59M_OVARY	1	1	0.1263	TRUE	0	0	0	434	0	FALSE	ACH-000520
59M_OVARY	VIM--FTH1	11	0	VIM	2124	chr10:17271381:+	FTH1	12402	chr11:61734935:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1263	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	59M_OVARY	1	1	0.1263	TRUE	0	0	0	6	0	TRUE	ACH-000520
59M_OVARY	CDK8--LATS2	9	7	CDK8	4959	chr13:26928017:+	LATS2	20501	chr13:21620369:-	ONLY_REF_SPLICE	YES	31	6	0.34	0.73	0.1034	0.0804	PROTCLUST,CDK8->ArcherDX_panel,FoundationOne_panel,chr13:26828276-26979375:+,cyclin-dependent_kinase_8,LATS2->Oncogene{Bushman},chr13:21547171-21635686:-,large_tumor_suppressor_kinase_2	59M_OVARY	0.34	0.73	0.1838	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	CAPZB--FTH1	9	0	CAPZB	1113	chr1:19811954:-	FTH1	19341	chr11:61734932:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1034	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	59M_OVARY	1	1	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	MT-TA--MT-TC	8	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0919	0.0345	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	59M_OVARY	1	1	0.1264	FALSE	462	80	0	856	0	FALSE	ACH-000520
59M_OVARY	RAI1--NOL4	8	2	RAI1	1321	chr17:17585107:+	NOL4	28644	chr18:31709984:-	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0919	0.023	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,NOL4->chr18:31431064-31804916:-,nucleolar_protein_4	59M_OVARY	0.91	1	0.1149	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	RIPK2--LINC00534	8	2	RIPK2	10962	chr8:90796367:+	LINC00534	19059	chr8:91258408:+	ONLY_REF_SPLICE	YES	153	0	0.06	1	0.0919	0.023	RIPK2->chr8:90769975-90803291:+,receptor_interacting_serine/threonine_kinase_2,LINC00534->chr8:91233716-91581546:+,long_intergenic_non-protein_coding_RNA_534	59M_OVARY	0.06	1	0.1149	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	RP11-123O10.4--GRIP1	8	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0919	0.0115	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	59M_OVARY	1	1	0.1034	FALSE	416	2512	207	587	0	FALSE	ACH-000520
59M_OVARY	VIM--RPS18	7	4	VIM	2166	chr10:17271423:+	RPS18	12822	chr6:33240404:+	INCL_NON_REF_SPLICE	YES	8587	60	0	0.15	0.0804	0.0459	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},VIM->chr10:17270258-17279592:+,vimentin,RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18	59M_OVARY	0	0.15	0.1263	TRUE	0	0	0	2	0	FALSE	ACH-000520
59M_OVARY	AP003900.6--AC011718.2	2	21	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	6	0	0.79	1	0.023	0.2412	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	59M_OVARY	0.79	1	0.2642	TRUE	0	1	0	20	1	FALSE	ACH-000520
59M_OVARY	SPIDR--FAM49B	3	17	SPIDR	7740	chr8:48206619:+	FAM49B	56843	chr8:130866589:-	ONLY_REF_SPLICE	YES	75	200	0.21	0.09	0.0345	0.1953	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	59M_OVARY	0.09	0.21	0.2298	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	EIF1--PPIA	7	0	EIF1	1107	chr17:39845243:+	PPIA	7809	chr7:44836303:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0804	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	59M_OVARY	1	1	0.0804	TRUE	0	0	0	7	0	TRUE	ACH-000520
59M_OVARY	FTH1--ACTG1	6	3	FTH1	1258	chr11:61734875:-	ACTG1	11019	chr17:79479357:-	INCL_NON_REF_SPLICE	YES	8902	176	0	0.05	0.0689	0.0345	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	59M_OVARY	0	0.05	0.1034	TRUE	0	0	0	64	0	FALSE	ACH-000520
59M_OVARY	MT-ATP6--MT-CO1	5	7	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3042	24622	0	0	0.0574	0.0804	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	59M_OVARY	0	0	0.1378	FALSE	183	104	9	328	0	FALSE	ACH-000520
59M_OVARY	NRIP1--AF127936.7	6	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0689	0.0345	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	59M_OVARY	0.82	1	0.1034	FALSE	292	1546	117	613	0	FALSE	ACH-000520
59M_OVARY	CTD-2008L17.1--RP11-456O19.2	6	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	3	0	0.73	1	0.0689	0.023	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	59M_OVARY	0.73	1	0.0919	FALSE	33	240	4	98	0	FALSE	ACH-000520
59M_OVARY	EDF1--NPDC1	5	5	EDF1	3072	chr9:139757358:-	NPDC1	10409	chr9:139935639:-	ONLY_REF_SPLICE	YES	491	71	0.02	0.12	0.0574	0.0574	{Klijn_CCL:Lung=1,Cervix=1,Pancreas=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,NPDC1->chr9:139933922-139940655:-,neural_proliferation,_differentiation_and_control,_1	59M_OVARY	0.02	0.12	0.1148	TRUE	0	0	0	5	0	FALSE	ACH-000520
59M_OVARY	MT-ATP6--MT-CO1	6	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	8838	23943	0	0	0.0689	0.0115	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	59M_OVARY	0	0	0.0804	FALSE	183	104	9	328	0	FALSE	ACH-000520
59M_OVARY	RP11-640M9.1--SEC22B	6	1	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	25754	chr1:145103908:+	ONLY_REF_SPLICE	YES	20	695	0.26	0.01	0.0689	0.0115	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	59M_OVARY	0.01	0.26	0.0804	FALSE	14	18	7	11	0	FALSE	ACH-000520
59M_OVARY	FTH1--ACTG1	6	0	FTH1	1187	chr11:61734946:-	ACTG1	10556	chr17:79479820:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	59M_OVARY	1	1	0.0689	TRUE	0	0	0	64	0	FALSE	ACH-000520
59M_OVARY	RP11-96H19.1--RP11-446N19.1	5	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0574	0.0459	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	59M_OVARY	1	1	0.1033	FALSE	515	4851	409	746	0	FALSE	ACH-000520
59M_OVARY	FTH1--ACTG1	4	7	FTH1	1235	chr11:61734898:-	ACTG1	10564	chr17:79479812:-	INCL_NON_REF_SPLICE	YES	7806	0	0	1	0.0459	0.0804	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	59M_OVARY	0	1	0.1263	TRUE	0	0	0	64	0	FALSE	ACH-000520
59M_OVARY	RCC1--FAM192A	5	0	RCC1	2175	chr1:28834672:+	FAM192A	24869	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0574	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	59M_OVARY	1	1	0.0574	TRUE	0	3	0	3	0	TRUE	ACH-000520
59M_OVARY	RP11-634B7.4--TRIM58	4	4	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	46	0.89	0.15	0.0459	0.0459	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	59M_OVARY	0.15	0.89	0.0918	TRUE	158	633	76	73	0	FALSE	ACH-000520
59M_OVARY	EIF3B--MAD1L1	4	2	EIF3B	15726	chr7:2416710:+	MAD1L1	60993	chr7:1855864:-	ONLY_REF_SPLICE	YES	509	182	0.01	0.03	0.0459	0.023	EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	59M_OVARY	0.01	0.03	0.0689	FALSE	0	6	0	3	1	FALSE	ACH-000520
59M_OVARY	EDF1--NPDC1	3	5	EDF1	3072	chr9:139757358:-	NPDC1	9205	chr9:139937525:-	ONLY_REF_SPLICE	YES	491	4	0.02	0.67	0.0345	0.0574	{Klijn_CCL:Lung=1,Cervix=1,Pancreas=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,NPDC1->chr9:139933922-139940655:-,neural_proliferation,_differentiation_and_control,_1	59M_OVARY	0.02	0.67	0.0919	TRUE	0	0	0	1	0	FALSE	ACH-000520
59M_OVARY	MT-ATP6--MT-CO1	4	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8974	24341	0	0	0.0459	0.0115	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	59M_OVARY	0	0	0.0574	FALSE	183	104	9	328	0	FALSE	ACH-000520
59M_OVARY	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	8900	22169	0	0	0.0459	0.0115	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	59M_OVARY	0	0	0.0574	FALSE	183	104	9	328	0	FALSE	ACH-000520
59M_OVARY	NRIP1--AF127936.7	3	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.32	1	0.0345	0.0574	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	59M_OVARY	0.32	1	0.0919	FALSE	164	806	69	479	0	FALSE	ACH-000520
59M_OVARY	VIM--FTH1	4	1	VIM	2175	chr10:17271432:+	FTH1	12485	chr11:61734852:-	INCL_NON_REF_SPLICE	YES	9047	10818	0	0	0.0459	0.0115	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	59M_OVARY	0	0	0.0574	FALSE	0	0	0	6	0	FALSE	ACH-000520
59M_OVARY	IGFBP4--NPM1	4	0	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	59M_OVARY	1	1	0.0459	TRUE	0	0	0	38	0	FALSE	ACH-000520
59M_OVARY	JSRP1--SUMO2	4	0	JSRP1	1202	chr19:2269557:-	SUMO2	10431	chr17:73179054:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	59M_OVARY	1	1	0.0459	TRUE	0	0	0	2	0	TRUE	ACH-000520
59M_OVARY	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	59M_OVARY	1	1	0.0459	TRUE	0	0	0	434	0	FALSE	ACH-000520
59M_OVARY	YWHAE--INPP5K	4	0	YWHAE	1332	chr17:1303341:-	INPP5K	16682	chr17:1417273:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0459	0	LOCAL_REARRANGEMENT:-:[94193],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,INPP5K->Oncogene{Bushman},chr17:1397865-1420182:-,inositol_polyphosphate-5-phosphatase_K	59M_OVARY	1	1	0.0459	TRUE	0	1	0	1	1	TRUE	ACH-000520
59M_OVARY	ZNF654--HMGB2	4	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	59M_OVARY	1	1	0.0459	TRUE	0	0	0	518	0	FALSE	ACH-000520
59M_OVARY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	10352	23347	0	0	0.0345	0.0115	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	59M_OVARY	0	0	0.046	FALSE	183	104	9	328	0	FALSE	ACH-000520
59M_OVARY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1130	chrM:8656:+	MT-CO1	5092	chrM:6314:+	INCL_NON_REF_SPLICE	YES	9065	23842	0	0	0.0345	0.0115	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	59M_OVARY	0	0	0.046	FALSE	183	104	9	328	0	FALSE	ACH-000520
59M_OVARY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5332	chrM:6554:+	INCL_NON_REF_SPLICE	YES	8974	24498	0	0	0.0345	0.0115	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	59M_OVARY	0	0	0.046	FALSE	183	104	9	328	0	FALSE	ACH-000520
59M_OVARY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8900	24322	0	0	0.0345	0.0115	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	59M_OVARY	0	0	0.046	FALSE	183	104	9	328	0	FALSE	ACH-000520
59M_OVARY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11009	24322	0	0	0.0345	0.0115	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	59M_OVARY	0	0	0.046	FALSE	183	104	9	328	0	FALSE	ACH-000520
59M_OVARY	RP11-640M9.1--SEC22B	3	1	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	YES	20	609	0.17	0.01	0.0345	0.0115	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	59M_OVARY	0.01	0.17	0.046	FALSE	20	16	6	14	0	FALSE	ACH-000520
59M_OVARY	SLC1A5--MT-ND4L	3	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	578	0	0.01	1	0.0345	0.0115	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	59M_OVARY	0.01	1	0.046	FALSE	0	0	0	189	0	FALSE	ACH-000520
59M_OVARY	VIM--FTH1	3	1	VIM	2162	chr10:17271419:+	FTH1	12343	chr11:61734994:-	INCL_NON_REF_SPLICE	YES	8240	66	0	0.06	0.0345	0.0115	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	59M_OVARY	0	0.06	0.046	FALSE	0	0	0	6	0	FALSE	ACH-000520
59M_OVARY	VTI1A--RP11-57H14.3	3	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	46	0	0.08	1	0.0345	0.0115	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	59M_OVARY	0.08	1	0.046	FALSE	272	151	14	158	0	FALSE	ACH-000520
59M_OVARY	EIF1--RPL5	3	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	59M_OVARY	1	1	0.0345	TRUE	0	0	0	39	0	FALSE	ACH-000520
59M_OVARY	GOLGA7--GAPDH	3	0	GOLGA7	7138	chr8:41367163:+	GAPDH	15187	chr12:6646829:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	GOLGA7->chr8:41347915-41368499:+,golgin_A7,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	59M_OVARY	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	HNRNPR--TCEA3	3	0	HNRNPR	5264	chr1:23660011:-	TCEA3	31793	chr1:23713912:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:-:[36725],HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,TCEA3->chr1:23707554-23751233:-,transcription_elongation_factor_A3	59M_OVARY	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	MT-ND4--MT-ND1	3	0	MT-ND4	1538	chrM:11297:+	MT-ND1	5585	chrM:3513:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	59M_OVARY	1	1	0.0345	FALSE	51	52	3	16	0	FALSE	ACH-000520
59M_OVARY	RPLP0--SUN2	3	0	RPLP0	2885	chr12:120637154:-	SUN2	14731	chr22:39146960:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0,SUN2->Sad1_and_UNC84_domain_containing_2,chr22:39130730-39190148:-	59M_OVARY	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	SPIDR--FAM49B	1	8	SPIDR	4404	chr8:48192605:+	FAM49B	55678	chr8:130867993:-	ONLY_REF_SPLICE	NO	90	195	0.09	0.04	0.0115	0.0919	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	59M_OVARY	0.04	0.09	0.1034	TRUE	0	0	0	1	0	FALSE	ACH-000520
59M_OVARY	VIM--FTH1	3	0	VIM	2101	chr10:17271358:+	FTH1	12344	chr11:61734993:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	59M_OVARY	1	1	0.0345	TRUE	0	0	0	6	0	TRUE	ACH-000520
59M_OVARY	VIM--FTH1	3	0	VIM	2128	chr10:17271385:+	FTH1	12415	chr11:61734922:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	59M_OVARY	1	1	0.0345	TRUE	0	0	0	6	0	TRUE	ACH-000520
59M_OVARY	BOP1--EEF1D	2	1	BOP1	4671	chr8:145500212:-	EEF1D	29535	chr8:144663498:-	ONLY_REF_SPLICE	YES	243	2344	0.01	0	0.023	0.0115	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	59M_OVARY	0	0.01	0.0345	FALSE	0	0	0	4	0	FALSE	ACH-000520
59M_OVARY	C7orf50--MAD1L1	2	1	C7orf50	3078	chr7:1166893:-	MAD1L1	55558	chr7:1855864:-	ONLY_REF_SPLICE	YES	230	182	0.01	0.02	0.023	0.0115	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	59M_OVARY	0.01	0.02	0.0345	FALSE	0	4	0	5	2	FALSE	ACH-000520
59M_OVARY	C7orf50--MAD1L1	2	1	C7orf50	12142	chr7:1040106:-	MAD1L1	55558	chr7:1855864:-	ONLY_REF_SPLICE	YES	348	182	0.01	0.02	0.023	0.0115	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	59M_OVARY	0.01	0.02	0.0345	FALSE	0	2	0	4	0	FALSE	ACH-000520
59M_OVARY	SCRIB--EEF1D	2	1	SCRIB	5901	chr8:144892649:-	EEF1D	37479	chr8:144663498:-	ONLY_REF_SPLICE	YES	141	2344	0.02	0	0.023	0.0115	SCRIB->chr8:144873090-144897549:-,scribbled_planar_cell_polarity_protein,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	59M_OVARY	0	0.02	0.0345	FALSE	0	0	0	1	0	FALSE	ACH-000520
59M_OVARY	EDF1--SLC16A3	2	0	EDF1	3072	chr9:139757358:-	SLC16A3	14119	chr17:80193859:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3	59M_OVARY	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	EIF3B--MAD1L1	2	0	EIF3B	11446	chr7:2412430:+	MAD1L1	60993	chr7:1855864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	59M_OVARY	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	EIF3B--MAD1L1	1	4	EIF3B	15726	chr7:2416710:+	MAD1L1	50054	chr7:2041756:-	ONLY_REF_SPLICE	YES	509	46	0.01	0.1	0.0115	0.0459	EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	59M_OVARY	0.01	0.1	0.0574	FALSE	0	13	0	3	1	FALSE	ACH-000520
59M_OVARY	GALNS--ANKRD11	2	0	GALNS	1213	chr16:88923166:-	ANKRD11	54883	chr16:89341599:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GALNS->Oncogene{Bushman},chr16:88880142-88923378:-,galactosamine_(N-acetyl)-6-sulfatase,ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-	59M_OVARY	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	GAS6-AS1--TFDP1	2	0	GAS6-AS1	1062	chr13:114518664:+	TFDP1	11094	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	59M_OVARY	1	1	0.023	TRUE	0	0	0	4	0	TRUE	ACH-000520
59M_OVARY	RCC1--KRT8	2	0	RCC1	2175	chr1:28834672:+	KRT8	26658	chr12:53295856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,KRT8->chr12:53290977-53343738:-,keratin_8	59M_OVARY	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0.0459	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	59M_OVARY	1	1	0.0574	FALSE	192	492	57	212	0	FALSE	ACH-000520
59M_OVARY	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0115	0.0459	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	59M_OVARY	1	1	0.0574	FALSE	407	2205	196	549	0	FALSE	ACH-000520
59M_OVARY	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0115	0.0459	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	59M_OVARY	1	1	0.0574	FALSE	467	2173	244	435	0	FALSE	ACH-000520
59M_OVARY	SLC7A5--GSE1	2	0	SLC7A5	8091	chr16:87871451:-	GSE1	22365	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	59M_OVARY	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	TSSC2--SPCS3	2	0	TSSC2	2907	chr11:3405514:+	SPCS3	20534	chr4:177243321:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	TSSC2->chr11:3402191-3430208:+,tumor_suppressing_subtransferable_candidate_2_pseudogene,SPCS3->chr4:177241115-177253396:+,signal_peptidase_complex_subunit_3	59M_OVARY	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	TYMP--MYH9	2	0	TYMP	1153	chr22:50968333:-	MYH9	28693	chr22:36701148:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	TYMP->Oncogene{Bushman},chr22:50964181-50968485:-,thymidine_phosphorylase,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	59M_OVARY	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	WDR45B--CSNK1D	2	0	WDR45B	2355	chr17:80601825:-	CSNK1D	21664	chr17:80223672:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	WDR45B->WD_repeat_domain_45B,chr17:80572438-80606429:-,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	59M_OVARY	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	WTAPP1--RUVBL1	2	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	59M_OVARY	1	1	0.023	TRUE	9	252	6	66	0	FALSE	ACH-000520
59M_OVARY	CTD-2337A12.1--CAST	1	3	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	32	1	0.11	0.0115	0.0345	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	59M_OVARY	0.11	1	0.046	TRUE	347	1186	183	220	0	FALSE	ACH-000520
59M_OVARY	HNRNPR--TCEA3	1	3	HNRNPR	8792	chr1:23644976:-	TCEA3	32940	chr1:23710910:-	ONLY_REF_SPLICE	NO	410	15	0.01	0.21	0.0115	0.0345	LOCAL_REARRANGEMENT:-:[36725],HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,TCEA3->chr1:23707554-23751233:-,transcription_elongation_factor_A3	59M_OVARY	0.01	0.21	0.046	FALSE	0	0	0	1	0	FALSE	ACH-000520
59M_OVARY	RAI1--NOL4	1	2	RAI1	3231	chr17:17587017:+	NOL4	28644	chr18:31709984:-	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0115	0.023	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,NOL4->chr18:31431064-31804916:-,nucleolar_protein_4	59M_OVARY	0.75	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	RIPK2--LINC00534	1	2	RIPK2	10962	chr8:90796367:+	LINC00534	17959	chr8:91233875:+	ONLY_REF_SPLICE	NO	153	0	0.02	1	0.0115	0.023	RIPK2->chr8:90769975-90803291:+,receptor_interacting_serine/threonine_kinase_2,LINC00534->chr8:91233716-91581546:+,long_intergenic_non-protein_coding_RNA_534	59M_OVARY	0.02	1	0.0345	TRUE	0	0	0	1	0	FALSE	ACH-000520
59M_OVARY	BOP1--EEF1D	1	1	BOP1	4671	chr8:145500212:-	EEF1D	30136	chr8:144662897:-	ONLY_REF_SPLICE	YES	243	2343	0.01	0	0.0115	0.0115	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	59M_OVARY	0	0.01	0.023	FALSE	0	0	0	4	0	FALSE	ACH-000520
59M_OVARY	C7orf50--EEF1D	1	1	C7orf50	3078	chr7:1166893:-	EEF1D	28091	chr8:144669019:-	ONLY_REF_SPLICE	YES	230	143	0.01	0.01	0.0115	0.0115	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	59M_OVARY	0.01	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000520
59M_OVARY	C7orf50--MAD1L1	1	1	C7orf50	11060	chr7:1049586:-	MAD1L1	42333	chr7:2108973:-	ONLY_REF_SPLICE	YES	367	53	0.01	0.04	0.0115	0.0115	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	59M_OVARY	0.01	0.04	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000520
59M_OVARY	CCNYL1--CCAR2	1	1	CCNYL1	1577	chr2:208576840:+	CCAR2	20976	chr8:22463249:+	ONLY_REF_SPLICE	YES	67	31	0.03	0.06	0.0115	0.0115	CCNYL1->chr2:208576264-208626563:+,cyclin_Y_like_1,CCAR2->cell_cycle_and_apoptosis_regulator_2,chr8:22462145-22479027:+	59M_OVARY	0.03	0.06	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000520
59M_OVARY	CDH13--RP11-22H5.2	1	1	CDH13	3588	chr16:82673070:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	233	0	0.01	1	0.0115	0.0115	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	59M_OVARY	0.01	1	0.023	FALSE	0	2	0	10	0	FALSE	ACH-000520
59M_OVARY	CDH13--RP11-22H5.2	1	1	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	158	0	0.01	1	0.0115	0.0115	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	59M_OVARY	0.01	1	0.023	FALSE	14	31	0	36	0	FALSE	ACH-000520
59M_OVARY	EDF1--SURF4	1	1	EDF1	2690	chr9:139757740:-	SURF4	8136	chr9:136234321:-	ONLY_REF_SPLICE	NO	738	686	0	0	0.0115	0.0115	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,SURF4->chr9:136228325-136242970:-,surfeit_4	59M_OVARY	0	0	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000520
59M_OVARY	EDF1--SURF4	1	1	EDF1	2690	chr9:139757740:-	SURF4	9553	chr9:136232904:-	ONLY_REF_SPLICE	YES	738	431	0	0	0.0115	0.0115	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,SURF4->chr9:136228325-136242970:-,surfeit_4	59M_OVARY	0	0	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000520
59M_OVARY	GAS5--CYHR1	1	1	GAS5	5208	chr1:173833813:-	CYHR1	17847	chr8:145678843:-	ONLY_REF_SPLICE	YES	2404	27	0	0.07	0.0115	0.0115	GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding),CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	59M_OVARY	0	0.07	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000520
59M_OVARY	HNRNPR--TCEA3	1	1	HNRNPR	7577	chr1:23648021:-	TCEA3	31793	chr1:23713912:-	ONLY_REF_SPLICE	YES	534	18	0	0.1	0.0115	0.0115	LOCAL_REARRANGEMENT:-:[36725],HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,TCEA3->chr1:23707554-23751233:-,transcription_elongation_factor_A3	59M_OVARY	0	0.1	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000520
59M_OVARY	HP1BP3--CAPZB	1	1	HP1BP3	1129	chr1:21113688:-	CAPZB	26857	chr1:19746244:-	ONLY_REF_SPLICE	YES	51	117	0.04	0.02	0.0115	0.0115	GTEx_FI:{Small_Intestine=[count:1=pct:1.8],Blood=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	59M_OVARY	0.02	0.04	0.023	TRUE	3	0	0	4	0	FALSE	ACH-000520
59M_OVARY	LRRN1--SETMAR	1	1	LRRN1	1483	chr3:3841603:+	SETMAR	13003	chr3:4354582:+	ONLY_REF_SPLICE	YES	0	8	1	0.2	0.0115	0.0115	LRRN1->chr3:3841121-3889387:+,leucine_rich_repeat_neuronal_1,SETMAR->SET_domain_and_mariner_transposase_fusion_gene,chr3:4344988-4359251:+	59M_OVARY	0.2	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000520
59M_OVARY	MTCH2--CHST1	1	1	MTCH2	11250	chr11:47644253:-	CHST1	18301	chr11:45674156:-	ONLY_REF_SPLICE	YES	264	0	0.01	1	0.0115	0.0115	MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2,CHST1->carbohydrate_sulfotransferase_1,chr11:45670427-45687172:-	59M_OVARY	0.01	1	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000520
59M_OVARY	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0.0115	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	59M_OVARY	1	1	0.023	FALSE	93	270	15	244	0	FALSE	ACH-000520
59M_OVARY	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0115	0.0115	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	59M_OVARY	1	1	0.023	TRUE	160	277	29	98	0	FALSE	ACH-000520
59M_OVARY	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0.0115	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	59M_OVARY	1	1	0.023	TRUE	477	1352	189	275	0	FALSE	ACH-000520
59M_OVARY	SCRIB--EEF1D	1	1	SCRIB	7771	chr8:144890779:-	EEF1D	37479	chr8:144663498:-	ONLY_REF_SPLICE	NO	62	2344	0.03	0	0.0115	0.0115	SCRIB->chr8:144873090-144897549:-,scribbled_planar_cell_polarity_protein,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	59M_OVARY	0	0.03	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000520
59M_OVARY	TMEM123--BIRC2	1	1	TMEM123	5695	chr11:102319543:-	BIRC2	22451	chr11:102248227:+	ONLY_REF_SPLICE	NO	597	128	0	0.02	0.0115	0.0115	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},{Klijn_CCL:Brain=1},LOCAL_INVERSION:-:+:[17662],TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	59M_OVARY	0	0.02	0.023	FALSE	1	3	0	8	0	FALSE	ACH-000520
SNU201_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	42	7	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5509	0.0918	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.6427	TRUE	508	994	45	981	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	33	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4328	0.0131	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.4459	FALSE	462	80	0	856	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	30	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	161	1	0.17	0.97	0.3935	0.0262	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU201_CENTRAL_NERVOUS_SYSTEM	0.17	0.97	0.4197	TRUE	519	3926	326	965	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	COL1A2--COL4A2	17	3	COL1A2	18296	chr7:94045815:+	COL4A2	44173	chr13:111082748:+	ONLY_REF_SPLICE	YES	7137	319	0	0.06	0.223	0.0393	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	SNU201_CENTRAL_NERVOUS_SYSTEM	0	0.06	0.2623	TRUE	0	0	0	2	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	RP4-565E6.1--HYDIN	12	7	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	4	1	0.83	0.1574	0.0918	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SNU201_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.2492	TRUE	456	1387	91	133	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	13	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	17	1	0.47	0.1705	0.0262	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU201_CENTRAL_NERVOUS_SYSTEM	0.47	1	0.1967	TRUE	458	1351	185	561	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	11	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	124	1	0.09	0.1443	0.0262	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU201_CENTRAL_NERVOUS_SYSTEM	0.09	1	0.1705	TRUE	347	1186	183	220	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	11	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1443	0.0262	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU201_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.1705	FALSE	499	1288	110	792	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	10	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.1312	0.0787	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU201_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.2099	FALSE	499	1288	110	792	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	10	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1312	0.0393	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.1705	FALSE	292	1546	117	613	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	10	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1312	0.0131	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.1443	FALSE	462	80	0	856	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	9	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	43	1	0.19	0.118	0.0131	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU201_CENTRAL_NERVOUS_SYSTEM	0.19	1	0.1311	TRUE	465	1949	224	605	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	7	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.48	1	0.0918	0.0393	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU201_CENTRAL_NERVOUS_SYSTEM	0.48	1	0.1311	FALSE	125	705	46	456	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	7	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0918	0.0262	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU201_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.118	FALSE	499	1288	110	792	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	SAMD5--SASH1	7	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0918	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0918	TRUE	53	396	64	110	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	6	3	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	343	198	0.03	0.04	0.0787	0.0393	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SNU201_CENTRAL_NERVOUS_SYSTEM	0.03	0.04	0.118	FALSE	76	19	3	26	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0525	0.118	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU201_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.1705	FALSE	499	1288	110	792	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	VIM--TMSB4X	6	1	VIM	2162	chr10:17271419:+	TMSB4X	13357	chrX:12994379:+	INCL_NON_REF_SPLICE	YES	6459	95	0	0.07	0.0787	0.0131	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SNU201_CENTRAL_NERVOUS_SYSTEM	0	0.07	0.0918	FALSE	0	0	0	15	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	5	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	28	1	0.22	0.0656	0.0393	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU201_CENTRAL_NERVOUS_SYSTEM	0.22	1	0.1049	FALSE	16	356	14	466	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	VIM--TMSB4X	5	1	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	5343	87	0	0.06	0.0656	0.0131	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SNU201_CENTRAL_NERVOUS_SYSTEM	0	0.06	0.0787	FALSE	0	0	0	15	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	CPSF6--C9orf3	5	0	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0656	0	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0656	TRUE	53	99	2	44	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0656	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0656	FALSE	499	1288	110	792	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0525	0.0393	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU201_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.0918	FALSE	515	4851	409	746	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	RP11-334E6.12--MT2A	4	2	RP11-334E6.12	2039	chr11:119289699:+	MT2A	5557	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	218	1	0.03	0.86	0.0525	0.0262	RP11-334E6.12->chr11:119288661-119289824:+,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SNU201_CENTRAL_NERVOUS_SYSTEM	0.03	0.86	0.0787	TRUE	0	0	0	7	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	4	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	6	1	0.5	0.0525	0.0262	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU201_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0787	TRUE	477	1352	189	275	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	LAMP1--PKM	4	0	LAMP1	10141	chr13:113976769:+	PKM	15012	chr15:72523512:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0525	0	LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0525	TRUE	0	0	0	3	0	TRUE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	VIM-AS1--ACADVL	4	0	VIM-AS1	1583	chr10:17271402:-	ACADVL	16012	chr17:7127648:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0525	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,ACADVL->acyl-CoA_dehydrogenase,_very_long_chain,chr17:7120444-7128592:+	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0.0262	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0655	FALSE	462	80	0	856	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	COL1A2--COL4A2	3	1	COL1A2	18261	chr7:94045780:+	COL4A2	54312	chr13:111102757:+	INCL_NON_REF_SPLICE	YES	6983	371	0	0.01	0.0393	0.0131	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	SNU201_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0524	FALSE	0	0	0	1	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	3	1	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0.0131	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0524	FALSE	462	80	0	856	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	3	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0393	0.0131	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0524	TRUE	254	575	65	124	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.38	1	0.0262	0.0525	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU201_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.0787	FALSE	164	806	69	479	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	VIM--ACTB	3	0	VIM	2136	chr10:17271393:+	ACTB	15629	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0393	TRUE	0	0	0	9	0	TRUE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	2	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	28	0.8	0.12	0.0262	0.0262	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU201_CENTRAL_NERVOUS_SYSTEM	0.12	0.8	0.0524	FALSE	0	48	1	163	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	ARHGAP19--RP11-298J20.4	2	0	ARHGAP19	1085	chr10:99052329:-	RP11-298J20.4	24008	chr10:126631026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	ARHGAP19->Rho_GTPase_activating_protein_19,chr10:98978996-99052413:-,RP11-298J20.4->chr10:126605712-126631450:+	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	C20orf112--ASXL1	2	0	C20orf112	16174	chr20:31062404:-	ASXL1	33870	chr20:30954187:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	LOCAL_INVERSION:-:+:[3740],C20orf112->chr20:31030862-31172876:-,ASXL1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},additional_sex_combs_like_1,_transcriptional_regulator,chr20:30946155-31027122:+	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	CBX5--ERI3	2	0	CBX5	1095	chr12:54673792:-	ERI3	26777	chr1:44785416:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	CBX5->chr12:54624724-54673886:-,chromobox_5,ERI3->ERI1_exoribonuclease_family_member_3,chr1:44686742-44820932:-	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	CDH2--DDX27	2	0	CDH2	9588	chr18:25591810:-	DDX27	31061	chr20:47841650:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	CDH2->cadherin_2,chr18:25530930-25757410:-,DDX27->DEAD-box_helicase_27,chr20:47835884-47860614:+	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	MRPS22--SMARCA2	2	0	MRPS22	6545	chr3:139000677:+	SMARCA2	35404	chr9:2070418:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	MRPS22->chr3:138724648-139076065:+,mitochondrial_ribosomal_protein_S22,SMARCA2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_2,chr9:2015342-2193624:+	SNU201_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	0	14	1	0.22	0.0131	0.0393	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU201_CENTRAL_NERVOUS_SYSTEM	0.22	1	0.0524	FALSE	0	23	1	67	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	6	1	0.33	0.0131	0.0262	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU201_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.0393	TRUE	274	363	69	150	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	1	1	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	1580	57	0	0.03	0.0131	0.0131	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU201_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0262	FALSE	0	20	0	35	2	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	COL1A2--COL4A2	1	1	COL1A2	13081	chr7:94040466:+	COL4A2	44317	chr13:111082892:+	ONLY_REF_SPLICE	NO	7510	343	0	0.01	0.0131	0.0131	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	SNU201_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	DANCR--PBX1	1	1	DANCR	1530	chr4:53579126:+	PBX1	31421	chr1:164761731:+	ONLY_REF_SPLICE	YES	271	88	0.01	0.02	0.0131	0.0131	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	SNU201_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	NRP1--PARD3	1	1	NRP1	4012	chr10:33619636:-	PARD3	64705	chr10:34420511:-	ONLY_REF_SPLICE	YES	378	16	0.01	0.11	0.0131	0.0131	GTEx_FI:{Nerve=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Kidney=[count:1=pct:7.1],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Kidney_-_Cortex=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Lung=1},NRP1->chr10:33466420-33625190:-,neuropilin_1,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	SNU201_CENTRAL_NERVOUS_SYSTEM	0.01	0.11	0.0262	FALSE	0	3	0	3	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	SCARB1--UBC	1	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	35	46	0.05	0.04	0.0131	0.0131	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU201_CENTRAL_NERVOUS_SYSTEM	0.04	0.05	0.0262	TRUE	55	66	6	101	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	TOX--SDCBP	1	1	TOX	3632	chr8:59851861:-	SDCBP	19361	chr8:59477578:+	ONLY_REF_SPLICE	NO	313	11	0.01	0.15	0.0131	0.0131	TOX->chr8:59717977-60031767:-,thymocyte_selection_associated_high_mobility_group_box,SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein	SNU201_CENTRAL_NERVOUS_SYSTEM	0.01	0.15	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	VCAN--EDIL3	1	1	VCAN	6707	chr5:82808215:+	EDIL3	36876	chr5:83433172:-	ONLY_REF_SPLICE	YES	172	1044	0.01	0	0.0131	0.0131	VCAN->Oncogene{Bushman},chr5:82767284-82878122:+,versican,EDIL3->EGF_like_repeats_and_discoidin_domains_3,chr5:83236373-83680611:-	SNU201_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000623
SNU201_CENTRAL_NERVOUS_SYSTEM	YWHAE--RP11-390P2.4	1	1	YWHAE	1332	chr17:1303341:-	RP11-390P2.4	15364	chr6:139015530:+	ONLY_REF_SPLICE	NO	1933	2	0	0.5	0.0131	0.0131	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,RP11-390P2.4->chr6:139013685-139018425:+	SNU201_CENTRAL_NERVOUS_SYSTEM	0	0.5	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000623
NCIH2087_LUNG	TBC1D32--STK31	216	33	TBC1D32	27616	chr6:121484116:-	STK31	69972	chr7:23826127:+	ONLY_REF_SPLICE	YES	6	7	0.98	0.97	1.95	0.2979	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,STK31->chr7:23749786-23872132:+,serine/threonine_kinase_31	NCIH2087_LUNG	0.97	0.98	2.2479	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	TIMM23B--LINC00843	179	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	1.616	0.307	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2087_LUNG	1	1	1.923	TRUE	508	994	45	981	0	FALSE	ACH-000841
NCIH2087_LUNG	TIMM23--RP11-464F9.1	99	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	126	5	0.45	0.95	0.8938	0.0271	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2087_LUNG	0.45	0.95	0.9209	TRUE	519	3926	326	965	0	FALSE	ACH-000841
NCIH2087_LUNG	POLB--PLAT	86	14	POLB	1232	chr8:42196203:+	PLAT	23527	chr8:42050729:-	ONLY_REF_SPLICE	YES	214	50	0.32	0.67	0.7764	0.1264	POLB->chr8:42195972-42229326:+,polymerase_(DNA)_beta,PLAT->chr8:42032236-42065242:-,plasminogen_activator,_tissue_type	NCIH2087_LUNG	0.32	0.67	0.9028	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	ATAD2--ANXA13	61	14	ATAD2	1103	chr8:124428488:-	ANXA13	41697	chr8:124714976:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.5507	0.1264	ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-,ANXA13->annexin_A13,chr8:124693034-124749647:-	NCIH2087_LUNG	0.99	1	0.6771	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	RP11-503C24.1--MLLT4	59	4	RP11-503C24.1	1331	chr6:168595368:+	MLLT4	31716	chr6:168343809:+	ONLY_REF_SPLICE	YES	0	93	1	0.4	0.5327	0.0361	GTEx_FI:{Colon=[count:1=pct:0.5],Testis=[count:1=pct:1.0]},RP11-503C24.1->chr6:168595038-168605181:+,MLLT4->Oncogene{Bushman},chr6:168227602-168372703:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_4	NCIH2087_LUNG	0.4	1	0.5688	TRUE	2	10	1	3	0	FALSE	ACH-000841
NCIH2087_LUNG	TPX2--DEFB123	43	29	TPX2	11582	chr20:30366787:+	DEFB123	26070	chr20:30037832:+	ONLY_REF_SPLICE	YES	334	0	0.18	1	0.3882	0.2618	TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,DEFB123->chr20:30028322-30038060:+,defensin_beta_123	NCIH2087_LUNG	0.18	1	0.65	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	MT-ND6--MT-TE	38	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3431	0.0271	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2087_LUNG	1	1	0.3702	FALSE	499	1288	110	792	0	FALSE	ACH-000841
NCIH2087_LUNG	ADCY9--PTMA	38	0	ADCY9	3210	chr16:4163977:-	PTMA	31554	chr2:232576640:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3431	0	GTEx&tcga_normals:1/3694=0.03%,ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH2087_LUNG	1	1	0.3431	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	TBC1D32--STK31	32	10	TBC1D32	27616	chr6:121484116:-	STK31	70302	chr7:23826457:+	ONLY_REF_SPLICE	YES	6	10	0.88	0.81	0.2889	0.0903	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,STK31->chr7:23749786-23872132:+,serine/threonine_kinase_31	NCIH2087_LUNG	0.81	0.88	0.3792	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	TNK2--XXYLT1	32	7	TNK2	2752	chr3:195635356:-	XXYLT1	42384	chr3:194877310:-	ONLY_REF_SPLICE	YES	27	7	0.59	0.85	0.2889	0.0632	TNK2->chr3:195590235-195638816:-,tyrosine_kinase_non_receptor_2,XXYLT1->Oncogene{Bushman},chr3:194789008-194991896:-,xyloside_xylosyltransferase_1	NCIH2087_LUNG	0.59	0.85	0.3521	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	MT-TA--MT-TC	30	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2708	0.0542	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2087_LUNG	1	1	0.325	FALSE	462	80	0	856	0	FALSE	ACH-000841
NCIH2087_LUNG	KDM4C--TPD52L3	29	7	KDM4C	12172	chr9:6893232:+	TPD52L3	45773	chr9:6330182:+	ONLY_REF_SPLICE	YES	9	0	0.8	1	0.2618	0.0632	KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,TPD52L3->chr9:6328349-6331900:+,tumor_protein_D52-like_3	NCIH2087_LUNG	0.8	1	0.325	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	PRKD2--ZNF28	26	8	PRKD2	17443	chr19:47184907:-	ZNF28	29131	chr19:53311386:-	ONLY_REF_SPLICE	YES	18	4	0.65	0.89	0.2347	0.0722	PRKD2->chr19:47177532-47220384:-,protein_kinase_D2,ZNF28->chr19:53300662-53360853:-,zinc_finger_protein_28	NCIH2087_LUNG	0.65	0.89	0.3069	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	ZNF654--HMGB2	27	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2438	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2087_LUNG	1	1	0.2438	TRUE	0	0	0	518	0	FALSE	ACH-000841
NCIH2087_LUNG	CD22--GAPDHS	24	2	CD22	2739	chr19:35820133:+	GAPDHS	19261	chr19:36027715:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.2167	0.0181	CD22->CD22_molecule,chr19:35810164-35838258:+,GAPDHS->chr19:36024314-36036218:+,glyceraldehyde-3-phosphate_dehydrogenase,_spermatogenic	NCIH2087_LUNG	0.96	1	0.2348	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	RP11-680G10.1--GSE1	23	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	53	1	0.32	0.2076	0.0181	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2087_LUNG	0.32	1	0.2257	TRUE	465	1949	224	605	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-CO3--MT-ATP6	3	75	MT-CO3	1459	chrM:9665:+	MT-ATP6	4899	chrM:8641:+	INCL_NON_REF_SPLICE	YES	4	0	0.95	1	0.0271	0.6771	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2087_LUNG	0.95	1	0.7042	FALSE	189	492	56	216	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-CO3--MT-ATP6	4	70	MT-CO3	1220	chrM:9426:+	MT-ATP6	4919	chrM:8661:+	INCL_NON_REF_SPLICE	YES	6	24	0.93	0.76	0.0361	0.632	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2087_LUNG	0.76	0.93	0.6681	FALSE	189	492	56	216	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-CO3--MT-ATP6	5	63	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	7	9	0.91	0.88	0.0451	0.5688	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2087_LUNG	0.88	0.91	0.6139	FALSE	189	492	56	216	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-CO3--MT-ATP6	3	65	MT-CO3	1205	chrM:9411:+	MT-ATP6	5179	chrM:8921:+	INCL_NON_REF_SPLICE	YES	7	60	0.91	0.53	0.0271	0.5868	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2087_LUNG	0.53	0.91	0.6139	FALSE	189	492	56	216	0	FALSE	ACH-000841
NCIH2087_LUNG	MET--CFTR	18	2	MET	5556	chr7:116364303:+	CFTR	56006	chr7:117251635:+	ONLY_REF_SPLICE	YES	432	0	0.04	1	0.1625	0.0181	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CFTR->chr7:117105838-117356025:+,cystic_fibrosis_transmembrane_conductance_regulator	NCIH2087_LUNG	0.04	1	0.1806	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	ASAP1--TRPS1	17	3	ASAP1	24018	chr8:131164982:-	TRPS1	48690	chr8:116713299:-	ONLY_REF_SPLICE	YES	29	0	0.41	1	0.1535	0.0271	ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1	NCIH2087_LUNG	0.41	1	0.1806	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	MAP3K10--RP11-810K23.10	15	4	MAP3K10	3151	chr19:40704462:+	RP11-810K23.10	14163	chr15:21099104:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.1354	0.0361	MAP3K10->chr19:40697651-40721482:+,mitogen-activated_protein_kinase_kinase_kinase_10,RP11-810K23.10->chr15:21098712-21099309:-	NCIH2087_LUNG	0.86	1	0.1715	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	MT-CO3--MT-ATP6	3	51	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0271	0.4604	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2087_LUNG	0.98	1	0.4875	FALSE	189	492	56	216	0	FALSE	ACH-000841
NCIH2087_LUNG	HSP90AB1--MT-RNR2	15	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2185	0	0.01	1	0.1354	0.009	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2087_LUNG	0.01	1	0.1444	FALSE	13	9	0	364	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND6--MT-TE	12	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1083	0.1083	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2087_LUNG	1	1	0.2166	FALSE	499	1288	110	792	0	FALSE	ACH-000841
NCIH2087_LUNG	HSP90AB1--MT-RNR2	14	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2230	0	0.01	1	0.1264	0.009	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2087_LUNG	0.01	1	0.1354	FALSE	13	9	0	364	0	FALSE	ACH-000841
NCIH2087_LUNG	HSPBP1--GRK5	14	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1264	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH2087_LUNG	1	1	0.1264	TRUE	1	39	0	134	39	FALSE	ACH-000841
NCIH2087_LUNG	NRIP1--AF127936.7	13	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1174	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2087_LUNG	1	1	0.1174	FALSE	292	1546	117	613	0	FALSE	ACH-000841
NCIH2087_LUNG	POLB--PLAT	9	15	POLB	1616	chr8:42196587:+	PLAT	23527	chr8:42050729:-	ONLY_REF_SPLICE	YES	245	50	0.09	0.32	0.0813	0.1354	POLB->chr8:42195972-42229326:+,polymerase_(DNA)_beta,PLAT->chr8:42032236-42065242:-,plasminogen_activator,_tissue_type	NCIH2087_LUNG	0.09	0.32	0.2167	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	RP4-565E6.1--HYDIN	11	5	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	3	1	0.84	0.0993	0.0451	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH2087_LUNG	0.84	1	0.1444	TRUE	456	1387	91	133	0	FALSE	ACH-000841
NCIH2087_LUNG	TNK2--XXYLT1	9	11	TNK2	2752	chr3:195635356:-	XXYLT1	40036	chr3:194901244:-	ONLY_REF_SPLICE	YES	27	6	0.43	0.77	0.0813	0.0993	TNK2->chr3:195590235-195638816:-,tyrosine_kinase_non_receptor_2,XXYLT1->Oncogene{Bushman},chr3:194789008-194991896:-,xyloside_xylosyltransferase_1	NCIH2087_LUNG	0.43	0.77	0.1806	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	MT-ND6--MT-ND5	10	3	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	1920	1	0.01	0.0903	0.0271	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH2087_LUNG	0.01	1	0.1174	FALSE	101	855	57	72	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-CO3--MT-ATP6	6	17	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0542	0.1535	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2087_LUNG	0.96	1	0.2077	FALSE	189	492	56	216	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND6--MT-TE	4	21	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0.1896	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2087_LUNG	1	1	0.2257	FALSE	499	1288	110	792	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND6--MT-TE	8	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0.0451	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2087_LUNG	1	1	0.1173	FALSE	499	1288	110	792	0	FALSE	ACH-000841
NCIH2087_LUNG	NCOR2--UBC	9	1	NCOR2	11484	chr12:124934361:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	55	46	0.15	0.18	0.0813	0.009	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH2087_LUNG	0.15	0.18	0.0903	TRUE	12	15	2	11	0	FALSE	ACH-000841
NCIH2087_LUNG	CD22--GAPDHS	9	0	CD22	2739	chr19:35820133:+	GAPDHS	20439	chr19:36029209:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0813	0	CD22->CD22_molecule,chr19:35810164-35838258:+,GAPDHS->chr19:36024314-36036218:+,glyceraldehyde-3-phosphate_dehydrogenase,_spermatogenic	NCIH2087_LUNG	1	1	0.0813	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	MT-CO3--MT-ATP6	3	24	MT-CO3	1020	chrM:9226:+	MT-ATP6	4929	chrM:8671:+	INCL_NON_REF_SPLICE	YES	0	24	1	0.53	0.0271	0.2167	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2087_LUNG	0.53	1	0.2438	FALSE	189	492	56	216	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-CO3--MT-ATP6	9	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0813	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2087_LUNG	1	1	0.0813	FALSE	189	492	56	216	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-CO3--MT-ATP6	3	24	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0.2167	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2087_LUNG	1	1	0.2438	FALSE	189	492	56	216	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-TA--MT-TC	8	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0.0361	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2087_LUNG	1	1	0.1083	FALSE	462	80	0	856	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-CO3--MT-ATP6	8	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.0722	0.009	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2087_LUNG	0.69	1	0.0812	FALSE	189	492	56	216	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND6--MT-TE	3	21	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0.1896	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2087_LUNG	1	1	0.2167	FALSE	499	1288	110	792	0	FALSE	ACH-000841
NCIH2087_LUNG	ADCY9--PTMA	8	0	ADCY9	3210	chr16:4163977:-	PTMA	31563	chr2:232576649:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0	GTEx&tcga_normals:1/3694=0.03%,ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH2087_LUNG	1	1	0.0722	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	MT-ATP6--MT-RNR2	8	0	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2087_LUNG	1	1	0.0722	FALSE	63	17	1	58	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND6--MT-TE	5	12	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0.1083	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2087_LUNG	1	1	0.1534	FALSE	499	1288	110	792	0	FALSE	ACH-000841
NCIH2087_LUNG	C15orf57--CBX3	7	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	20	34	0.31	0.21	0.0632	0.0181	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2087_LUNG	0.21	0.31	0.0813	TRUE	267	562	48	632	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND4--MT-ATP8	6	4	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	8752	0	0	1	0.0542	0.0361	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2087_LUNG	0	1	0.0903	FALSE	231	217	16	283	0	FALSE	ACH-000841
NCIH2087_LUNG	RP11-680G10.1--GSE1	6	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	26	1	0.28	0.0542	0.0361	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2087_LUNG	0.28	1	0.0903	TRUE	458	1351	185	561	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-CO3--MT-ATP6	5	7	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	5	0	0.71	1	0.0451	0.0632	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2087_LUNG	0.71	1	0.1083	FALSE	189	492	56	216	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND4--MT-ATP8	6	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	9125	5	0	0.64	0.0542	0.0271	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2087_LUNG	0	0.64	0.0813	FALSE	231	217	16	283	0	FALSE	ACH-000841
NCIH2087_LUNG	RP11-114H23.1--RP11-114H23.2	5	5	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0451	0.0451	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH2087_LUNG	1	1	0.0902	FALSE	81	155	12	160	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ATP6--MT-CO1	6	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2087_LUNG	1	1	0.0542	FALSE	183	104	9	328	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ATP6--MT-RNR2	6	0	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2087_LUNG	1	1	0.0542	FALSE	63	17	1	58	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-CO3--MT-ATP6	6	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2087_LUNG	1	1	0.0542	FALSE	189	492	56	216	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-CO3--MT-ATP6	6	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2087_LUNG	1	1	0.0542	FALSE	189	492	56	216	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND4--MT-ATP8	6	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2087_LUNG	1	1	0.0542	FALSE	231	204	14	283	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND4--MT-ATP8	6	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2087_LUNG	1	1	0.0542	FALSE	231	205	14	283	0	FALSE	ACH-000841
NCIH2087_LUNG	NPM1P24--SET	6	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2087_LUNG	1	1	0.0542	TRUE	0	0	0	434	0	FALSE	ACH-000841
NCIH2087_LUNG	C15orf57--CBX3	5	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	18	34	0.28	0.17	0.0451	0.0181	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2087_LUNG	0.17	0.28	0.0632	TRUE	267	562	48	632	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	NO	6472	0	0	1	0.0451	0.009	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2087_LUNG	0	1	0.0541	FALSE	63	17	1	58	0	FALSE	ACH-000841
NCIH2087_LUNG	MITF--ROBO2	5	0	MITF	18495	chr3:70005653:+	ROBO2	34161	chr3:77526565:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	MITF->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:69788586-70017488:+,microphthalmia-associated_transcription_factor,ROBO2->chr3:75955846-77699115:+,roundabout_guidance_receptor_2	NCIH2087_LUNG	1	1	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2087_LUNG	1	1	0.0451	FALSE	230	198	14	283	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND6--MT-ND5	5	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH2087_LUNG	1	1	0.0451	FALSE	101	855	57	72	0	FALSE	ACH-000841
NCIH2087_LUNG	PANX1--CCDC67	5	0	PANX1	2706	chr11:93886796:+	CCDC67	23830	chr11:93127625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0451	0	PANX1->chr11:93862094-93915138:+,pannexin_1,CCDC67->chr11:93063137-93171653:+,coiled-coil_domain_containing_67	NCIH2087_LUNG	1	1	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	GEMIN7--CLPTM1	4	2	GEMIN7	1835	chr19:45583287:+	CLPTM1	14097	chr19:45480600:+	ONLY_REF_SPLICE	YES	32	87	0.16	0.06	0.0361	0.0181	LOCAL_REARRANGEMENT:+:[85854],GEMIN7->chr19:45582453-45594782:+,gem_nuclear_organelle_associated_protein_7,CLPTM1->chr19:45457842-45496599:+,cleft_lip_and_palate_associated_transmembrane_protein_1	NCIH2087_LUNG	0.06	0.16	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	MT-ATP6--MT-CO1	3	6	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	4062	11693	0	0	0.0271	0.0542	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2087_LUNG	0	0	0.0813	FALSE	183	104	9	328	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	9413	0	0	1	0.0271	0.0542	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2087_LUNG	0	1	0.0813	FALSE	231	217	16	283	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9231	41	0	0.18	0.0271	0.0542	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2087_LUNG	0	0.18	0.0813	FALSE	231	215	16	283	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	9403	0	0	1	0.0271	0.0542	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2087_LUNG	0	1	0.0813	FALSE	231	217	16	283	0	FALSE	ACH-000841
NCIH2087_LUNG	RP11-120D5.1--MID1	4	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	40	0.86	0.13	0.0361	0.0181	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2087_LUNG	0.13	0.86	0.0542	FALSE	16	356	14	466	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1139	chrM:8665:+	MT-RNR2	4749	chrM:1738:+	INCL_NON_REF_SPLICE	YES	7289	0	0	1	0.0361	0.009	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2087_LUNG	0	1	0.0451	FALSE	63	17	1	58	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9397	41	0	0.16	0.0271	0.0451	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2087_LUNG	0	0.16	0.0722	FALSE	231	217	16	283	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND4--MT-ATP8	4	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	8826	1771	0	0	0.0361	0.009	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2087_LUNG	0	0	0.0451	FALSE	231	217	16	283	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2087_LUNG	1	1	0.0361	FALSE	183	104	9	328	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1121	chrM:8647:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2087_LUNG	1	1	0.0361	FALSE	63	17	1	58	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2087_LUNG	1	1	0.0361	FALSE	462	80	0	856	0	FALSE	ACH-000841
NCIH2087_LUNG	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0271	0.0361	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2087_LUNG	0.7	1	0.0632	FALSE	275	511	55	178	0	FALSE	ACH-000841
NCIH2087_LUNG	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.88	0.88	0.0271	0.0361	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2087_LUNG	0.88	0.88	0.0632	FALSE	467	2173	244	435	0	FALSE	ACH-000841
NCIH2087_LUNG	RPSAP52--HMGA2	4	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0361	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	NCIH2087_LUNG	1	1	0.0361	FALSE	0	59	0	125	0	FALSE	ACH-000841
NCIH2087_LUNG	TBC1D32--STK31	4	0	TBC1D32	27531	chr6:121484201:-	STK31	69972	chr7:23826127:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,STK31->chr7:23749786-23872132:+,serine/threonine_kinase_31	NCIH2087_LUNG	1	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	9202	1417	0	0	0.0271	0.0271	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2087_LUNG	0	0	0.0542	FALSE	231	217	16	283	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1531	chrM:11290:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12035	5	0	0.55	0.0271	0.0271	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2087_LUNG	0	0.55	0.0542	FALSE	231	217	16	283	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND6--MT-ND5	3	3	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	1865	1	0	0.0271	0.0271	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH2087_LUNG	0	1	0.0542	FALSE	101	855	57	72	0	FALSE	ACH-000841
NCIH2087_LUNG	ABI1--RP11-362K2.2	3	2	ABI1	3560	chr10:27112067:-	RP11-362K2.2	19948	chr12:58937907:+	ONLY_REF_SPLICE	YES	225	0	0.02	1	0.0271	0.0181	ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,RP11-362K2.2->chr12:58937907-59206842:+	NCIH2087_LUNG	0.02	1	0.0452	TRUE	0	0	0	1	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7929	12613	0	0	0.0271	0.0181	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2087_LUNG	0	0	0.0452	FALSE	183	104	9	328	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-CO3--MT-ATP6	3	2	MT-CO3	1068	chrM:9274:+	MT-ATP6	5439	chrM:9181:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0271	0.0181	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2087_LUNG	0.83	1	0.0452	FALSE	189	492	56	216	0	FALSE	ACH-000841
NCIH2087_LUNG	ARFRP1--EEF1D	3	1	ARFRP1	2669	chr20:62337709:-	EEF1D	29253	chr8:144663498:-	ONLY_REF_SPLICE	YES	72	1585	0.05	0	0.0271	0.009	ARFRP1->ADP_ribosylation_factor_related_protein_1,ArcherDX_panel,FoundationOne_panel,chr20:62329996-62339377:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	NCIH2087_LUNG	0	0.05	0.0361	FALSE	0	0	0	2	0	FALSE	ACH-000841
NCIH2087_LUNG	MAP3K10--RP11-810K23.10	3	1	MAP3K10	1970	chr19:40698620:+	RP11-810K23.10	14163	chr15:21099104:-	INCL_NON_REF_SPLICE	YES	12	0	0.25	1	0.0271	0.009	MAP3K10->chr19:40697651-40721482:+,mitogen-activated_protein_kinase_kinase_kinase_10,RP11-810K23.10->chr15:21098712-21099309:-	NCIH2087_LUNG	0.25	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10222	41	0	0.09	0.0271	0.009	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2087_LUNG	0	0.09	0.0361	FALSE	231	205	14	283	0	FALSE	ACH-000841
NCIH2087_LUNG	ADCY9--PTMA	3	0	ADCY9	3204	chr16:4163983:-	PTMA	31563	chr2:232576649:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx&tcga_normals:1/3694=0.03%,ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH2087_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	APP--MT-ND2	3	0	APP	11619	chr21:27394230:-	MT-ND2	32998	chrM:5292:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH2087_LUNG	1	1	0.0271	FALSE	0	1	0	51	0	FALSE	ACH-000841
NCIH2087_LUNG	EIF3B--MAD1L1	3	0	EIF3B	15726	chr7:2416710:+	MAD1L1	60993	chr7:1855864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	NCIH2087_LUNG	1	1	0.0271	TRUE	0	6	0	3	1	TRUE	ACH-000841
NCIH2087_LUNG	EREG--RPS28	3	0	EREG	1117	chr4:75230976:+	RPS28	13469	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	EREG->chr4:75230860-75254468:+,epiregulin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH2087_LUNG	1	1	0.0271	TRUE	0	0	0	3	0	TRUE	ACH-000841
NCIH2087_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1133	chrM:8659:+	MT-CO1	5176	chrM:6398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2087_LUNG	1	1	0.0271	FALSE	183	104	9	328	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1162	chrM:8688:+	MT-RNR2	5248	chrM:2237:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2087_LUNG	1	1	0.0271	FALSE	63	17	1	58	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1143	chrM:8669:+	MT-RNR2	5257	chrM:2246:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2087_LUNG	1	1	0.0271	FALSE	63	17	1	58	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2087_LUNG	1	1	0.0271	FALSE	63	17	1	58	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2087_LUNG	1	1	0.0271	FALSE	231	204	14	283	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1046	chrM:14628:-	MT-TE	4575	chrM:14693:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2087_LUNG	1	1	0.0271	FALSE	499	1288	110	792	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2087_LUNG	1	1	0.0271	FALSE	499	1288	110	792	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2087_LUNG	1	1	0.0271	FALSE	499	1288	110	792	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2087_LUNG	1	1	0.0271	FALSE	499	1288	110	792	0	FALSE	ACH-000841
NCIH2087_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2087_LUNG	1	1	0.0271	FALSE	499	1288	110	792	0	FALSE	ACH-000841
NCIH2087_LUNG	RP11-15B17.1--MT-ATP8	3	0	RP11-15B17.1	1238	chr4:100871400:+	MT-ATP8	12279	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	RP11-15B17.1->chr4:100871163-101116256:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2087_LUNG	1	1	0.0271	FALSE	0	0	0	5	0	FALSE	ACH-000841
NCIH2087_LUNG	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0181	0.0361	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2087_LUNG	0.86	1	0.0542	FALSE	76	45	6	15	0	FALSE	ACH-000841
NCIH2087_LUNG	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	1	0.67	0.86	0.0181	0.0361	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2087_LUNG	0.67	0.86	0.0542	FALSE	515	4851	409	746	0	FALSE	ACH-000841
NCIH2087_LUNG	NRIP1--AF127936.7	1	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	25	0	0.22	1	0.009	0.0542	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2087_LUNG	0.22	1	0.0632	FALSE	164	806	69	479	0	FALSE	ACH-000841
NCIH2087_LUNG	AC131097.3--AC093642.5	2	1	AC131097.3	2273	chr2:242824786:+	AC093642.5	12811	chr2:243056790:+	ONLY_REF_SPLICE	YES	0	3	1	0.5	0.0181	0.009	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	NCIH2087_LUNG	0.5	1	0.0271	FALSE	2	37	1	16	0	FALSE	ACH-000841
NCIH2087_LUNG	AC131097.3--AC093642.5	2	1	AC131097.3	2273	chr2:242824786:+	AC093642.5	11670	chr2:243037038:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0.009	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	NCIH2087_LUNG	1	1	0.0271	FALSE	3	20	2	16	0	FALSE	ACH-000841
NCIH2087_LUNG	EIF3B--MAD1L1	2	1	EIF3B	15726	chr7:2416710:+	MAD1L1	50054	chr7:2041756:-	ONLY_REF_SPLICE	YES	613	68	0	0.04	0.0181	0.009	EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	NCIH2087_LUNG	0	0.04	0.0271	FALSE	0	13	0	3	1	FALSE	ACH-000841
NCIH2087_LUNG	PRKD2--ZNF28	2	1	PRKD2	17443	chr19:47184907:-	ZNF28	32266	chr19:53304955:-	ONLY_REF_SPLICE	YES	18	14	0.14	0.18	0.0181	0.009	PRKD2->chr19:47177532-47220384:-,protein_kinase_D2,ZNF28->chr19:53300662-53360853:-,zinc_finger_protein_28	NCIH2087_LUNG	0.14	0.18	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	RP11-114H23.1--RP11-114H23.2	2	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	0	2	1	0.6	0.0181	0.009	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH2087_LUNG	0.6	1	0.0271	FALSE	81	155	12	160	0	FALSE	ACH-000841
NCIH2087_LUNG	C7orf50--EIF3B	2	0	C7orf50	12142	chr7:1040106:-	EIF3B	33301	chr7:2418324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	NCIH2087_LUNG	1	1	0.0181	TRUE	0	1	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	GEMIN7--CLPTM1	2	0	GEMIN7	1183	chr19:45582635:+	CLPTM1	14097	chr19:45480600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_REARRANGEMENT:+:[85854],GEMIN7->chr19:45582453-45594782:+,gem_nuclear_organelle_associated_protein_7,CLPTM1->chr19:45457842-45496599:+,cleft_lip_and_palate_associated_transmembrane_protein_1	NCIH2087_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2087_LUNG	1	1	0.0181	FALSE	125	705	46	456	0	FALSE	ACH-000841
NCIH2087_LUNG	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.83	1	0.009	0.0361	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2087_LUNG	0.83	1	0.0451	FALSE	192	492	57	212	0	FALSE	ACH-000841
NCIH2087_LUNG	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	3	0	0.62	1	0.009	0.0361	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2087_LUNG	0.62	1	0.0451	FALSE	407	2205	196	549	0	FALSE	ACH-000841
NCIH2087_LUNG	ASAP1--TRPS1	1	1	ASAP1	24018	chr8:131164982:-	TRPS1	54643	chr8:116635985:-	ONLY_REF_SPLICE	YES	29	10	0.06	0.17	0.009	0.009	ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1	NCIH2087_LUNG	0.06	0.17	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000841
NCIH2087_LUNG	ATP11A--CUL4A	1	1	ATP11A	34653	chr13:113530255:+	CUL4A	67191	chr13:113917801:+	ONLY_REF_SPLICE	NO	102	81	0.02	0.02	0.009	0.009	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,CUL4A->chr13:113862552-113919399:+,cullin_4A	NCIH2087_LUNG	0.02	0.02	0.018	TRUE	0	7	0	5	3	TRUE	ACH-000841
NCIH2087_LUNG	CAPN15--NOC4L	1	1	CAPN15	2366	chr16:583998:+	NOC4L	24151	chr12:132635526:+	ONLY_REF_SPLICE	NO	6	70	0.25	0.03	0.009	0.009	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},CAPN15->calpain_15,chr16:577717-604636:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	NCIH2087_LUNG	0.03	0.25	0.018	TRUE	0	6	0	4	3	TRUE	ACH-000841
NCIH2087_LUNG	CD63--NDUFS8	1	1	CD63	4008	chr12:56120484:-	NDUFS8	9921	chr11:67799619:+	ONLY_REF_SPLICE	YES	1402	55	0	0.04	0.009	0.009	CD63->CD63_molecule,chr12:56119107-56123491:-,NDUFS8->NADH:ubiquinone_oxidoreductase_core_subunit_S8,chr11:67798084-67804111:+	NCIH2087_LUNG	0	0.04	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000841
NCIH2087_LUNG	DDX17--PHLDB1	1	1	DDX17	15626	chr22:38883884:-	PHLDB1	51296	chr11:118518646:+	ONLY_REF_SPLICE	YES	197	62	0.01	0.03	0.009	0.009	DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-,PHLDB1->chr11:118477155-118528741:+,pleckstrin_homology_like_domain_family_B_member_1	NCIH2087_LUNG	0.01	0.03	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000841
NCIH2087_LUNG	MAF1--EEF1D	1	1	MAF1	3465	chr8:145161866:+	EEF1D	18240	chr8:144669022:-	ONLY_REF_SPLICE	YES	152	180	0.01	0.01	0.009	0.009	MAF1->MAF1_homolog,_negative_regulator_of_RNA_polymerase_III,chr8:145159402-145162514:+,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	NCIH2087_LUNG	0.01	0.01	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000841
NCIH2087_LUNG	MAF1--EEF1D	1	1	MAF1	3465	chr8:145161866:+	EEF1D	22984	chr8:144663498:-	ONLY_REF_SPLICE	YES	152	1585	0.01	0	0.009	0.009	MAF1->MAF1_homolog,_negative_regulator_of_RNA_polymerase_III,chr8:145159402-145162514:+,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	NCIH2087_LUNG	0	0.01	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000841
NCIH2087_LUNG	MITF--ROBO2	1	1	MITF	18523	chr3:70005681:+	ROBO2	34161	chr3:77526565:+	ONLY_REF_SPLICE	YES	74	0	0.03	1	0.009	0.009	MITF->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:69788586-70017488:+,microphthalmia-associated_transcription_factor,ROBO2->chr3:75955846-77699115:+,roundabout_guidance_receptor_2	NCIH2087_LUNG	0.03	1	0.018	TRUE	0	0	0	1	0	FALSE	ACH-000841
NCIH2087_LUNG	RP4-565E6.1--HYDIN	1	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	4	1	0.33	0.009	0.009	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH2087_LUNG	0.33	1	0.018	TRUE	84	87	4	41	0	FALSE	ACH-000841
NCIH2087_LUNG	SLC12A7--CLPTM1L	1	1	SLC12A7	20017	chr5:1060459:-	CLPTM1L	33597	chr5:1335289:-	ONLY_REF_SPLICE	NO	115	427	0.02	0	0.009	0.009	SLC12A7->chr5:1050499-1112150:-,solute_carrier_family_12_member_7,CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-	NCIH2087_LUNG	0	0.02	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000841
NCIH2087_LUNG	TNK2--XXYLT1	1	1	TNK2	2752	chr3:195635356:-	XXYLT1	49595	chr3:194790840:-	ONLY_REF_SPLICE	YES	27	15	0.07	0.12	0.009	0.009	TNK2->chr3:195590235-195638816:-,tyrosine_kinase_non_receptor_2,XXYLT1->Oncogene{Bushman},chr3:194789008-194991896:-,xyloside_xylosyltransferase_1	NCIH2087_LUNG	0.07	0.12	0.018	TRUE	0	0	0	1	0	FALSE	ACH-000841
JIMT1_BREAST	FLNB--SLMAP	659	188	FLNB	5340	chr3:58067503:+	SLMAP	80335	chr3:57893611:+	ONLY_REF_SPLICE	YES	843	211	0.5	0.8	9.0624	2.5853	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	JIMT1_BREAST	0.5	0.8	11.6477	TRUE	0	1	0	1	1	TRUE	ACH-000711
JIMT1_BREAST	FLNB--SLMAP	343	411	FLNB	20843	chr3:58107230:+	SLMAP	64698	chr3:57843460:+	ONLY_REF_SPLICE	YES	720	73	0.51	0.91	4.7169	5.652	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	JIMT1_BREAST	0.51	0.91	10.3689	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	PIEZO1--CBFA2T3	271	68	PIEZO1	2407	chr16:88815792:-	CBFA2T3	34265	chr16:88968064:-	ONLY_REF_SPLICE	YES	58	1	0.85	1	3.7267	0.9351	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[89647],PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1,CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-	JIMT1_BREAST	0.85	1	4.6618	TRUE	0	1	0	1	1	TRUE	ACH-000711
JIMT1_BREAST	VPS53--GPC5	199	88	VPS53	7511	chr17:600658:-	GPC5	64384	chr13:93518535:+	ONLY_REF_SPLICE	YES	19	0	0.94	1	2.7366	1.2102	VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	JIMT1_BREAST	0.94	1	3.9468	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	GTF2B--MUTYH	116	97	GTF2B	3250	chr1:89352944:-	MUTYH	16587	chr1:45799233:-	ONLY_REF_SPLICE	YES	235	58	0.48	0.79	1.5952	1.3339	{Klijn_CCL:Breast=1},GTF2B->chr1:89318615-89357627:-,general_transcription_factor_IIB,MUTYH->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:45794835-45806142:-,mutY_DNA_glycosylase	JIMT1_BREAST	0.48	0.79	2.9291	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ATP13A3--TMEM44	94	26	ATP13A3	4612	chr3:194206523:-	TMEM44	45833	chr3:194344039:-	ONLY_REF_SPLICE	YES	13	28	0.9	0.81	1.2927	0.3575	LOCAL_REARRANGEMENT:-:[89309],ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,TMEM44->chr3:194308402-194354418:-,transmembrane_protein_44	JIMT1_BREAST	0.81	0.9	1.6502	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	TET3--AOX1	94	13	TET3	1454	chr2:74230293:+	AOX1	40074	chr2:201480694:+	ONLY_REF_SPLICE	YES	0	3	1	0.97	1.2927	0.1788	TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3,AOX1->aldehyde_oxidase_1,chr2:201450591-201541787:+	JIMT1_BREAST	0.97	1	1.4715	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	TIMM23B--LINC00843	89	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2239	0.3438	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JIMT1_BREAST	1	1	1.5677	TRUE	508	994	45	981	0	FALSE	ACH-000711
JIMT1_BREAST	NANS--ANP32B	83	25	NANS	2418	chr9:100823279:+	ANP32B	20683	chr9:100773553:+	ONLY_REF_SPLICE	YES	478	1236	0.18	0.08	1.1414	0.3438	LOCAL_REARRANGEMENT:+:[40796],NANS->N-acetylneuraminate_synthase,chr9:100819021-100845357:+,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	JIMT1_BREAST	0.08	0.18	1.4852	TRUE	0	0	0	2	0	TRUE	ACH-000711
JIMT1_BREAST	ZMYM2--PRIM2	83	19	ZMYM2	8810	chr13:20580726:+	PRIM2	46806	chr6:57244699:+	ONLY_REF_SPLICE	YES	0	53	1	0.66	1.1414	0.2613	ZMYM2->Oncogene{Bushman},chr13:20532810-20665968:+,zinc_finger_MYM-type_containing_2,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	JIMT1_BREAST	0.66	1	1.4027	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	IVD--KNSTRN	56	18	IVD	9727	chr15:40708561:+	KNSTRN	24045	chr15:40678563:+	ONLY_REF_SPLICE	YES	53	202	0.58	0.27	0.7701	0.2475	LOCAL_REARRANGEMENT:+:[11239],IVD->chr15:40697686-40728146:+,isovaleryl-CoA_dehydrogenase,KNSTRN->chr15:40674922-40686447:+,kinetochore-localized_astrin/SPAG5_binding_protein	JIMT1_BREAST	0.27	0.58	1.0176	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	USP47--RP11-531H8.2	47	36	USP47	1802	chr11:11863771:+	RP11-531H8.2	39503	chr11:15593946:-	ONLY_REF_SPLICE	YES	16	0	0.84	1	0.6463	0.4951	USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,RP11-531H8.2->chr11:15593569-15643937:-	JIMT1_BREAST	0.84	1	1.1414	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	TIMM23--RP11-464F9.1	55	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.7563	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JIMT1_BREAST	1	1	0.7563	TRUE	519	3926	326	965	0	FALSE	ACH-000711
JIMT1_BREAST	SMIM4--STAB1	43	35	SMIM4	3037	chr3:52570789:+	STAB1	21355	chr3:52545666:+	ONLY_REF_SPLICE	YES	83	0	0.48	1	0.5913	0.4813	LOCAL_REARRANGEMENT:+:[9518],SMIM4->chr3:52568029-52613253:+,small_integral_membrane_protein_4,STAB1->chr3:52529354-52558511:+,stabilin_1	JIMT1_BREAST	0.48	1	1.0726	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	FLNB--SLMAP	28	88	FLNB	5340	chr3:58067503:+	SLMAP	81458	chr3:57894803:+	ONLY_REF_SPLICE	YES	843	342	0.12	0.25	0.385	1.2102	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	JIMT1_BREAST	0.12	0.25	1.5952	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	DEDD--RP3-518E13.2	46	11	DEDD	2874	chr1:161100605:-	RP3-518E13.2	11623	chr1:175290118:+	ONLY_REF_SPLICE	YES	64	0	0.47	1	0.6326	0.1513	DEDD->chr1:161090764-161102478:-,death_effector_domain_containing,RP3-518E13.2->chr1:175276354-175304595:+	JIMT1_BREAST	0.47	1	0.7839	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	SRC--RPN2	46	10	SRC	9178	chr20:36022680:+	RPN2	38639	chr20:35862423:+	ONLY_REF_SPLICE	YES	138	969	0.29	0.05	0.6326	0.1375	SRC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,SRC_proto-oncogene,_non-receptor_tyrosine_kinase,chr20:35973088-36034453:+,RPN2->chr20:35806813-35870022:+,ribophorin_II	JIMT1_BREAST	0.05	0.29	0.7701	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	FLNB--SLMAP	1	188	FLNB	5340	chr3:58067503:+	SLMAP	71262	chr3:57875768:+	ONLY_REF_SPLICE	NO	843	261	0.18	0.42	0.0138	2.5853	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	JIMT1_BREAST	0.18	0.42	2.5991	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	GTF2B--MUTYH	16	105	GTF2B	3250	chr1:89352944:-	MUTYH	16554	chr1:45799266:-	ONLY_REF_SPLICE	YES	235	59	0.34	0.67	0.22	1.4439	{Klijn_CCL:Breast=1},GTF2B->chr1:89318615-89357627:-,general_transcription_factor_IIB,MUTYH->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:45794835-45806142:-,mutY_DNA_glycosylase	JIMT1_BREAST	0.34	0.67	1.6639	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	GTF2B--MUTYH	17	100	GTF2B	3250	chr1:89352944:-	MUTYH	16584	chr1:45799236:-	ONLY_REF_SPLICE	YES	235	62	0.33	0.65	0.2338	1.3752	{Klijn_CCL:Breast=1},GTF2B->chr1:89318615-89357627:-,general_transcription_factor_IIB,MUTYH->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:45794835-45806142:-,mutY_DNA_glycosylase	JIMT1_BREAST	0.33	0.65	1.609	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ATP13A3--TMEM44	34	21	ATP13A3	4612	chr3:194206523:-	TMEM44	48103	chr3:194337998:-	ONLY_REF_SPLICE	YES	13	52	0.81	0.51	0.4676	0.2888	LOCAL_REARRANGEMENT:-:[89309],ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,TMEM44->chr3:194308402-194354418:-,transmembrane_protein_44	JIMT1_BREAST	0.51	0.81	0.7564	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	RP11-401O9.4--CTC-297N7.11	35	1	RP11-401O9.4	1094	chr17:10195230:+	CTC-297N7.11	12282	chr17:10511671:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4813	0.0138	NEIGHBORS[65218],RP11-401O9.4->chr17:10195137-10221243:+,CTC-297N7.11->chr17:10286461-10527203:+	JIMT1_BREAST	1	1	0.4951	FALSE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	RP11-680G10.1--GSE1	34	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	36	1	0.52	0.4676	0.0688	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JIMT1_BREAST	0.52	1	0.5364	TRUE	465	1949	224	605	0	FALSE	ACH-000711
JIMT1_BREAST	KANSL1--ARL17B	29	14	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	13	23	0.77	0.65	0.3988	0.1925	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	JIMT1_BREAST	0.65	0.77	0.5913	TRUE	181	1564	124	196	0	FALSE	ACH-000711
JIMT1_BREAST	BTBD10--TERT	31	5	BTBD10	1206	chr11:13484639:-	TERT	20933	chr5:1282739:-	ONLY_REF_SPLICE	YES	110	1	0.25	0.97	0.4263	0.0688	BTBD10->BTB_domain_containing_10,chr11:13409548-13484844:-,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	JIMT1_BREAST	0.25	0.97	0.4951	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ATP13A3--TMEM44	28	13	ATP13A3	4612	chr3:194206523:-	TMEM44	48481	chr3:194337620:-	ONLY_REF_SPLICE	YES	13	180	0.76	0.19	0.385	0.1788	LOCAL_REARRANGEMENT:-:[89309],ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,TMEM44->chr3:194308402-194354418:-,transmembrane_protein_44	JIMT1_BREAST	0.19	0.76	0.5638	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	GTF2B--MUTYH	17	52	GTF2B	3250	chr1:89352944:-	MUTYH	16651	chr1:45799169:-	ONLY_REF_SPLICE	YES	235	38	0.23	0.64	0.2338	0.7151	{Klijn_CCL:Breast=1},GTF2B->chr1:89318615-89357627:-,general_transcription_factor_IIB,MUTYH->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:45794835-45806142:-,mutY_DNA_glycosylase	JIMT1_BREAST	0.23	0.64	0.9489	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	MT-ND6--MT-TE	27	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3713	0.0413	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JIMT1_BREAST	1	1	0.4126	FALSE	499	1288	110	792	0	FALSE	ACH-000711
JIMT1_BREAST	MT-ND6--MT-TE	27	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3713	0.0413	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JIMT1_BREAST	1	1	0.4126	FALSE	499	1288	110	792	0	FALSE	ACH-000711
JIMT1_BREAST	KIAA2018--DDHD2	24	10	KIAA2018	1277	chr3:113415217:-	DDHD2	26474	chr8:38090505:+	ONLY_REF_SPLICE	YES	7	209	0.83	0.14	0.33	0.1375	KIAA2018->chr3:113367232-113415493:-,DDHD2->DDHD_domain_containing_2,chr8:38082736-38133076:+	JIMT1_BREAST	0.14	0.83	0.4675	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	FLVCR2--BATF	24	9	FLVCR2	2025	chr14:76045984:+	BATF	22657	chr14:76012805:+	ONLY_REF_SPLICE	YES	5	35	0.87	0.49	0.33	0.1238	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[31602],FLVCR2->chr14:76044960-76129557:+,feline_leukemia_virus_subgroup_C_cellular_receptor_family_member_2,BATF->Oncogene{Bushman},basic_leucine_zipper_ATF-like_transcription_factor,chr14:75988768-76013358:+	JIMT1_BREAST	0.49	0.87	0.4538	TRUE	0	1	0	1	1	TRUE	ACH-000711
JIMT1_BREAST	CAMSAP2--RP11-16L9.3	22	9	CAMSAP2	9868	chr1:200813997:+	RP11-16L9.3	26657	chr1:198977697:-	ONLY_REF_SPLICE	YES	41	0	0.43	1	0.3025	0.1238	CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+,RP11-16L9.3->chr1:198975169-198990166:-	JIMT1_BREAST	0.43	1	0.4263	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	TBC1D8--MIR4435-1HG	21	10	TBC1D8	17689	chr2:101650006:-	MIR4435-1HG	39279	chr2:112187197:-	ONLY_REF_SPLICE	YES	38	624	0.45	0.05	0.2888	0.1375	TBC1D8->TBC1_domain_family_member_8,chr2:101624079-101869328:-,MIR4435-1HG->chr2:111953927-112252677:-	JIMT1_BREAST	0.05	0.45	0.4263	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	NEURL--PDCD11	22	1	NEURL	2676	chr10:105315170:+	PDCD11	37646	chr10:105191886:+	ONLY_REF_SPLICE	YES	61	38	0.27	0.38	0.3025	0.0138	LOCAL_REARRANGEMENT:+:[47687],NEURL->chr10:105253736-105352309:+,PDCD11->chr10:105156405-105206049:+,programmed_cell_death_11	JIMT1_BREAST	0.27	0.38	0.3163	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	NETO2--ITFG1	17	19	NETO2	8115	chr16:47120137:-	ITFG1	45598	chr16:47192901:-	ONLY_REF_SPLICE	YES	151	66	0.19	0.35	0.2338	0.2613	GTEx_FI:{Brain=[count:3=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Amygdala=1},LOCAL_REARRANGEMENT:-:[10390],NETO2->chr16:47111614-47177908:-,neuropilin_and_tolloid_like_2,ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1	JIMT1_BREAST	0.19	0.35	0.4951	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	PIEZO1--CBFA2T3	18	14	PIEZO1	1311	chr16:88851309:-	CBFA2T3	34265	chr16:88968064:-	ONLY_REF_SPLICE	YES	24	1	0.57	0.97	0.2475	0.1925	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[89647],PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1,CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-	JIMT1_BREAST	0.57	0.97	0.44	TRUE	0	1	0	1	1	TRUE	ACH-000711
JIMT1_BREAST	TRIM5--RP11-222N13.1	17	15	TRIM5	2219	chr11:5958631:-	RP11-222N13.1	22310	chr11:15944830:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2338	0.2063	TRIM5->chr11:5684425-5959849:-,tripartite_motif_containing_5,RP11-222N13.1->chr11:15932503-15948989:+	JIMT1_BREAST	1	1	0.4401	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	TRIM5--RP11-222N13.1	18	10	TRIM5	2219	chr11:5958631:-	RP11-222N13.1	23409	chr11:15948778:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.2475	0.1375	TRIM5->chr11:5684425-5959849:-,tripartite_motif_containing_5,RP11-222N13.1->chr11:15932503-15948989:+	JIMT1_BREAST	0.97	1	0.385	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	MT-TA--MT-TC	18	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2475	0.0688	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JIMT1_BREAST	1	1	0.3163	FALSE	462	80	0	856	0	FALSE	ACH-000711
JIMT1_BREAST	ATP13A3--TMEM44	17	5	ATP13A3	4612	chr3:194206523:-	TMEM44	50804	chr3:194331749:-	ONLY_REF_SPLICE	YES	13	178	0.63	0.11	0.2338	0.0688	LOCAL_REARRANGEMENT:-:[89309],ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,TMEM44->chr3:194308402-194354418:-,transmembrane_protein_44	JIMT1_BREAST	0.11	0.63	0.3026	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	RP11-123O10.4--GRIP1	16	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.22	0.0825	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JIMT1_BREAST	1	1	0.3025	FALSE	416	2512	207	587	0	FALSE	ACH-000711
JIMT1_BREAST	SMIM4--STAB1	5	46	SMIM4	3170	chr3:52570922:+	STAB1	21355	chr3:52545666:+	ONLY_REF_SPLICE	YES	22	0	0.7	1	0.0688	0.6326	LOCAL_REARRANGEMENT:+:[9518],SMIM4->chr3:52568029-52613253:+,small_integral_membrane_protein_4,STAB1->chr3:52529354-52558511:+,stabilin_1	JIMT1_BREAST	0.7	1	0.7014	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	FBLN2--MT-CO1	16	1	FBLN2	10496	chr3:13655634:+	MT-CO1	26175	chrM:5916:+	INCL_NON_REF_SPLICE	YES	438	0	0.04	1	0.22	0.0138	FBLN2->chr3:13573824-13679922:+,fibulin_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JIMT1_BREAST	0.04	1	0.2338	FALSE	0	0	0	7	0	FALSE	ACH-000711
JIMT1_BREAST	FBLN2--MT-CO1	16	0	FBLN2	12460	chr3:13660509:+	MT-CO1	26700	chrM:6441:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.22	0	FBLN2->chr3:13573824-13679922:+,fibulin_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JIMT1_BREAST	1	1	0.22	FALSE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	GBP2--FGGY	14	5	GBP2	7520	chr1:89585777:-	FGGY	33477	chr1:59922633:+	INCL_NON_REF_SPLICE	YES	39	36	0.33	0.35	0.1925	0.0688	GBP2->chr1:89571815-89616139:-,guanylate_binding_protein_2,FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+	JIMT1_BREAST	0.33	0.35	0.2613	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ZNF654--HMGB2	15	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2063	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JIMT1_BREAST	1	1	0.2063	TRUE	0	0	0	518	0	FALSE	ACH-000711
JIMT1_BREAST	C9--LINC00604	13	6	C9	1065	chr5:39424906:-	LINC00604	19801	chr5:40267458:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1788	0.0825	C9->chr5:39284364-39424970:-,complement_component_9,LINC00604->chr5:40260759-40267759:+,long_intergenic_non-protein_coding_RNA_604	JIMT1_BREAST	1	1	0.2613	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	MT-ND6--MT-TE	11	14	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.1513	0.1925	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JIMT1_BREAST	0.93	1	0.3438	FALSE	499	1288	110	792	0	FALSE	ACH-000711
JIMT1_BREAST	NETO2--ITFG1	11	11	NETO2	7001	chr16:47143394:-	ITFG1	45598	chr16:47192901:-	ONLY_REF_SPLICE	YES	139	66	0.14	0.25	0.1513	0.1513	GTEx_FI:{Brain=[count:3=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Amygdala=1},LOCAL_REARRANGEMENT:-:[10390],NETO2->chr16:47111614-47177908:-,neuropilin_and_tolloid_like_2,ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1	JIMT1_BREAST	0.14	0.25	0.3026	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	MT-ND6--MT-TE	9	17	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.1238	0.2338	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JIMT1_BREAST	0.93	1	0.3576	FALSE	499	1288	110	792	0	FALSE	ACH-000711
JIMT1_BREAST	NRIP1--AF127936.7	13	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	3	0.7	0.82	0.1788	0.0138	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JIMT1_BREAST	0.7	0.82	0.1926	FALSE	292	1546	117	613	0	FALSE	ACH-000711
JIMT1_BREAST	NRIP1--AF127936.7	10	10	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	37	3	0.35	0.87	0.1375	0.1375	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JIMT1_BREAST	0.35	0.87	0.275	FALSE	164	806	69	479	0	FALSE	ACH-000711
JIMT1_BREAST	TRIM5--RP11-222N13.1	7	21	TRIM5	2219	chr11:5958631:-	RP11-222N13.1	21207	chr11:15933328:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0963	0.2888	TRIM5->chr11:5684425-5959849:-,tripartite_motif_containing_5,RP11-222N13.1->chr11:15932503-15948989:+	JIMT1_BREAST	1	1	0.3851	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	USP47--RP11-531H8.2	3	35	USP47	1802	chr11:11863771:+	RP11-531H8.2	39507	chr11:15593942:-	INCL_NON_REF_SPLICE	YES	16	0	0.7	1	0.0413	0.4813	USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,RP11-531H8.2->chr11:15593569-15643937:-	JIMT1_BREAST	0.7	1	0.5226	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	MT-ATP6--MT-CO1	11	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1513	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JIMT1_BREAST	1	1	0.1513	FALSE	183	104	9	328	0	FALSE	ACH-000711
JIMT1_BREAST	TRIM5--RP11-222N13.1	6	20	TRIM5	2219	chr11:5958631:-	RP11-222N13.1	21211	chr11:15933332:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0825	0.275	TRIM5->chr11:5684425-5959849:-,tripartite_motif_containing_5,RP11-222N13.1->chr11:15932503-15948989:+	JIMT1_BREAST	1	1	0.3575	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ATP13A3--TMEM44	5	21	ATP13A3	4612	chr3:194206523:-	TMEM44	48082	chr3:194338019:-	INCL_NON_REF_SPLICE	YES	13	54	0.67	0.33	0.0688	0.2888	LOCAL_REARRANGEMENT:-:[89309],ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,TMEM44->chr3:194308402-194354418:-,transmembrane_protein_44	JIMT1_BREAST	0.33	0.67	0.3576	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	TESK2--GTF2B	10	0	TESK2	3779	chr1:45887397:-	GTF2B	18589	chr1:89353050:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1375	0	TESK2->chr1:45809555-45956872:-,testis-specific_kinase_2,GTF2B->chr1:89318615-89357627:-,general_transcription_factor_IIB	JIMT1_BREAST	1	1	0.1375	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	VPS53--GPC5	1	34	VPS53	3923	chr17:613773:-	GPC5	64384	chr13:93518535:+	ONLY_REF_SPLICE	YES	105	0	0.25	1	0.0138	0.4676	VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	JIMT1_BREAST	0.25	1	0.4814	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1238	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JIMT1_BREAST	1	1	0.1238	FALSE	13	9	0	364	0	FALSE	ACH-000711
JIMT1_BREAST	NIPA2--POLA1	9	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1238	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	JIMT1_BREAST	1	1	0.1238	TRUE	46	1352	75	139	0	FALSE	ACH-000711
JIMT1_BREAST	SMIM4--STAB1	1	31	SMIM4	3170	chr3:52570922:+	STAB1	22046	chr3:52546357:+	ONLY_REF_SPLICE	NO	22	9	0.59	0.78	0.0138	0.4263	LOCAL_REARRANGEMENT:+:[9518],SMIM4->chr3:52568029-52613253:+,small_integral_membrane_protein_4,STAB1->chr3:52529354-52558511:+,stabilin_1	JIMT1_BREAST	0.59	0.78	0.4401	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ZNF510--HIATL2	7	7	ZNF510	3853	chr9:99537070:-	HIATL2	21794	chr9:99696197:-	ONLY_REF_SPLICE	YES	27	27	0.34	0.34	0.0963	0.0963	ZNF510->chr9:99518147-99540411:-,zinc_finger_protein_510,HIATL2->chr9:99660348-99775862:-	JIMT1_BREAST	0.34	0.34	0.1926	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	MT-ND6--MT-TE	6	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0825	0.1238	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JIMT1_BREAST	1	1	0.2063	FALSE	499	1288	110	792	0	FALSE	ACH-000711
JIMT1_BREAST	NPM1P24--SET	8	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	16	1192	0.36	0.01	0.11	0.0138	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JIMT1_BREAST	0.01	0.36	0.1238	TRUE	0	0	0	434	0	FALSE	ACH-000711
JIMT1_BREAST	NRIP1--AF127936.7	7	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	35	3	0.26	0.8	0.0963	0.0688	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JIMT1_BREAST	0.26	0.8	0.1651	FALSE	125	705	46	456	0	FALSE	ACH-000711
JIMT1_BREAST	RP11-114H23.1--RP11-114H23.2	7	5	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0963	0.0688	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	JIMT1_BREAST	0.92	1	0.1651	FALSE	81	155	12	160	0	FALSE	ACH-000711
JIMT1_BREAST	RP11-401O9.4--CTC-297N7.11	8	1	RP11-401O9.4	1094	chr17:10195230:+	CTC-297N7.11	7679	chr17:10470854:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.11	0.0138	NEIGHBORS[65218],RP11-401O9.4->chr17:10195137-10221243:+,CTC-297N7.11->chr17:10286461-10527203:+	JIMT1_BREAST	1	1	0.1238	FALSE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	GTF2B--MUTYH	5	11	GTF2B	3250	chr1:89352944:-	MUTYH	17314	chr1:45798506:-	ONLY_REF_SPLICE	YES	235	129	0.06	0.11	0.0688	0.1513	{Klijn_CCL:Breast=1},GTF2B->chr1:89318615-89357627:-,general_transcription_factor_IIB,MUTYH->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:45794835-45806142:-,mutY_DNA_glycosylase	JIMT1_BREAST	0.06	0.11	0.2201	TRUE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	SMIM4--STAB1	3	19	SMIM4	3170	chr3:52570922:+	STAB1	22301	chr3:52546612:+	ONLY_REF_SPLICE	YES	22	14	0.5	0.61	0.0413	0.2613	LOCAL_REARRANGEMENT:+:[9518],SMIM4->chr3:52568029-52613253:+,small_integral_membrane_protein_4,STAB1->chr3:52529354-52558511:+,stabilin_1	JIMT1_BREAST	0.5	0.61	0.3026	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ITGA3--KAT7	7	2	ITGA3	17255	chr17:48158772:+	KAT7	43205	chr17:47904763:+	ONLY_REF_SPLICE	YES	1192	80	0.01	0.1	0.0963	0.0275	ITGA3->chr17:48133332-48167845:+,integrin_subunit_alpha_3,KAT7->chr17:47865917-47906458:+,lysine_acetyltransferase_7	JIMT1_BREAST	0.01	0.1	0.1238	TRUE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	CALM3--MT-ND4L	7	1	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1329	0	0.01	1	0.0963	0.0138	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JIMT1_BREAST	0.01	1	0.1101	FALSE	1	1	0	107	0	FALSE	ACH-000711
JIMT1_BREAST	MT-TA--MT-TC	6	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0825	0.0688	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JIMT1_BREAST	1	1	0.1513	FALSE	462	80	0	856	0	FALSE	ACH-000711
JIMT1_BREAST	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0963	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JIMT1_BREAST	1	1	0.0963	FALSE	13	9	0	364	0	FALSE	ACH-000711
JIMT1_BREAST	NCOR2--UBC	7	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0963	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	JIMT1_BREAST	1	1	0.0963	TRUE	145	312	16	51	0	FALSE	ACH-000711
JIMT1_BREAST	SLC1A5--MT-ND4L	7	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0963	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JIMT1_BREAST	1	1	0.0963	FALSE	0	0	0	189	0	FALSE	ACH-000711
JIMT1_BREAST	PIEZO1--CBFA2T3	2	19	PIEZO1	2407	chr16:88815792:-	CBFA2T3	36493	chr16:88958893:-	ONLY_REF_SPLICE	YES	58	157	0.27	0.12	0.0275	0.2613	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[89647],PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1,CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-	JIMT1_BREAST	0.12	0.27	0.2888	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	C15orf57--CBX3	5	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	59	34	0.16	0.24	0.0688	0.0825	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JIMT1_BREAST	0.16	0.24	0.1513	TRUE	267	562	48	632	0	FALSE	ACH-000711
JIMT1_BREAST	PITPNC1--NCK2	6	2	PITPNC1	1744	chr17:65374318:+	NCK2	25285	chr2:106432887:+	ONLY_REF_SPLICE	YES	3	0	0.73	1	0.0825	0.0275	PITPNC1->chr17:65373575-65693372:+,phosphatidylinositol_transfer_protein,_cytoplasmic_1,NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+	JIMT1_BREAST	0.73	1	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	IVD--KNSTRN	1	21	IVD	9727	chr15:40708561:+	KNSTRN	22579	chr15:40676658:+	ONLY_REF_SPLICE	YES	53	204	0.29	0.1	0.0138	0.2888	LOCAL_REARRANGEMENT:+:[11239],IVD->chr15:40697686-40728146:+,isovaleryl-CoA_dehydrogenase,KNSTRN->chr15:40674922-40686447:+,kinetochore-localized_astrin/SPAG5_binding_protein	JIMT1_BREAST	0.1	0.29	0.3026	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	MT-ATP6--MT-CO1	6	0	MT-ATP6	1153	chrM:8679:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0825	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JIMT1_BREAST	1	1	0.0825	FALSE	183	104	9	328	0	FALSE	ACH-000711
JIMT1_BREAST	MT-ND3--MT-ATP8	6	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0825	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JIMT1_BREAST	1	1	0.0825	FALSE	351	233	23	137	0	FALSE	ACH-000711
JIMT1_BREAST	RP11-96H19.1--RP11-446N19.1	6	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0825	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JIMT1_BREAST	1	1	0.0825	FALSE	515	4851	409	746	0	FALSE	ACH-000711
JIMT1_BREAST	ANP32B--SEPT7	5	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0688	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	JIMT1_BREAST	1	1	0.0688	TRUE	1	1	0	18	1	TRUE	ACH-000711
JIMT1_BREAST	DLGAP4--AAR2	5	0	DLGAP4	2412	chr20:34995678:+	AAR2	32500	chr20:34843500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0688	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Brain_-_Frontal_Cortex_(BA9)=1},LOCAL_REARRANGEMENT:+:[35418],DLGAP4->chr20:34894258-35157040:+,discs_large_homolog_associated_protein_4,AAR2->AAR2_splicing_factor_homolog,chr20:34824381-34858840:+	JIMT1_BREAST	1	1	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	BTBD10--TERT	3	7	BTBD10	1206	chr11:13484639:-	TERT	18193	chr5:1294781:-	ONLY_REF_SPLICE	YES	110	0	0.08	1	0.0413	0.0963	BTBD10->BTB_domain_containing_10,chr11:13409548-13484844:-,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	JIMT1_BREAST	0.08	1	0.1376	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	IVD--KNSTRN	1	14	IVD	9727	chr15:40708561:+	KNSTRN	24088	chr15:40678606:+	ONLY_REF_SPLICE	YES	53	183	0.22	0.08	0.0138	0.1925	LOCAL_REARRANGEMENT:+:[11239],IVD->chr15:40697686-40728146:+,isovaleryl-CoA_dehydrogenase,KNSTRN->chr15:40674922-40686447:+,kinetochore-localized_astrin/SPAG5_binding_protein	JIMT1_BREAST	0.08	0.22	0.2063	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	RP11-476K15.1--CTD-2015H3.2	4	2	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	11	0	0.35	1	0.055	0.0275	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	JIMT1_BREAST	0.35	1	0.0825	FALSE	0	46	0	73	0	FALSE	ACH-000711
JIMT1_BREAST	MT-TA--MT-TC	4	1	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0.0138	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JIMT1_BREAST	1	1	0.0688	FALSE	462	80	0	856	0	FALSE	ACH-000711
JIMT1_BREAST	NEURL--PDCD11	4	1	NEURL	3840	chr10:105318005:+	PDCD11	37646	chr10:105191886:+	ONLY_REF_SPLICE	YES	101	38	0.05	0.12	0.055	0.0138	LOCAL_REARRANGEMENT:+:[47687],NEURL->chr10:105253736-105352309:+,PDCD11->chr10:105156405-105206049:+,programmed_cell_death_11	JIMT1_BREAST	0.05	0.12	0.0688	TRUE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	ATP13A3--TMEM44	1	12	ATP13A3	4612	chr3:194206523:-	TMEM44	48785	chr3:194337316:-	ONLY_REF_SPLICE	NO	13	203	0.5	0.06	0.0138	0.165	LOCAL_REARRANGEMENT:-:[89309],ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,TMEM44->chr3:194308402-194354418:-,transmembrane_protein_44	JIMT1_BREAST	0.06	0.5	0.1788	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	HSP90AB1--MT-RNR2	4	0	HSP90AB1	3428	chr6:44217251:+	MT-RNR2	11840	chrM:2713:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JIMT1_BREAST	1	1	0.055	FALSE	0	0	0	11	0	FALSE	ACH-000711
JIMT1_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JIMT1_BREAST	1	1	0.055	FALSE	499	1288	110	792	0	FALSE	ACH-000711
JIMT1_BREAST	MTFR1--PTDSS1	4	0	MTFR1	1051	chr8:66557019:+	PTDSS1	23260	chr8:97285527:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.055	0	MTFR1->chr8:66556969-66683496:+,mitochondrial_fission_regulator_1,PTDSS1->chr8:97273943-97349223:+,phosphatidylserine_synthase_1	JIMT1_BREAST	1	1	0.055	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	RP11-114H23.1--RP11-114H23.2	3	4	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0413	0.055	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	JIMT1_BREAST	0.88	1	0.0963	FALSE	81	155	12	160	0	FALSE	ACH-000711
JIMT1_BREAST	SMARCA4--C19orf38	3	4	SMARCA4	1253	chr19:11071850:+	C19orf38	53655	chr19:10973846:+	ONLY_REF_SPLICE	YES	50	2	0.12	0.78	0.0413	0.055	LOCAL_REARRANGEMENT:+:[91132],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	JIMT1_BREAST	0.12	0.78	0.0963	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	NR2F1-AS1--CTD-2275D24.3	3	3	NR2F1-AS1	8930	chr5:92889467:-	CTD-2275D24.3	25519	chr5:73624110:-	ONLY_REF_SPLICE	YES	25	0	0.19	1	0.0413	0.0413	NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-,CTD-2275D24.3->chr5:73623820-73630591:-	JIMT1_BREAST	0.19	1	0.0826	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	RP11-120D5.1--MID1	3	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	2	0.67	0.75	0.0413	0.0413	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JIMT1_BREAST	0.67	0.75	0.0826	FALSE	16	356	14	466	0	FALSE	ACH-000711
JIMT1_BREAST	L1CAM--GUCA2B	3	2	L1CAM	6618	chrX:153141216:-	GUCA2B	23600	chr1:42620351:+	ONLY_REF_SPLICE	YES	427	0	0.01	1	0.0413	0.0275	L1CAM->L1_cell_adhesion_molecule,Oncogene{Bushman},chrX:153126969-153174677:-,GUCA2B->chr1:42619092-42621495:+,guanylate_cyclase_activator_2B	JIMT1_BREAST	0.01	1	0.0688	FALSE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	RP11-476K15.1--CTD-2015H3.2	3	2	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	11	0	0.31	1	0.0413	0.0275	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	JIMT1_BREAST	0.31	1	0.0688	FALSE	0	46	0	73	0	FALSE	ACH-000711
JIMT1_BREAST	RP11-680G10.1--GSE1	2	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	26	1	0.24	0.0275	0.0825	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JIMT1_BREAST	0.24	1	0.11	TRUE	458	1351	185	561	0	FALSE	ACH-000711
JIMT1_BREAST	SMARCA4--C19orf38	3	2	SMARCA4	1253	chr19:11071850:+	C19orf38	54693	chr19:10979894:+	ONLY_REF_SPLICE	YES	50	1	0.09	0.83	0.0413	0.0275	LOCAL_REARRANGEMENT:+:[91132],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	JIMT1_BREAST	0.09	0.83	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	FLVCR2--BATF	3	1	FLVCR2	1593	chr14:76045552:+	BATF	22657	chr14:76012805:+	INCL_NON_REF_SPLICE	YES	16	35	0.2	0.1	0.0413	0.0138	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[31602],FLVCR2->chr14:76044960-76129557:+,feline_leukemia_virus_subgroup_C_cellular_receptor_family_member_2,BATF->Oncogene{Bushman},basic_leucine_zipper_ATF-like_transcription_factor,chr14:75988768-76013358:+	JIMT1_BREAST	0.1	0.2	0.0551	TRUE	0	1	0	1	1	TRUE	ACH-000711
JIMT1_BREAST	ANKRD36--FAM178B	3	0	ANKRD36	2895	chr2:97784254:+	FAM178B	75918	chr2:97613639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	{Klijn_CCL:Breast=1},LOCAL_INVERSION:+:-:[95058],ANKRD36->ankyrin_repeat_domain_36,chr2:97779233-97930258:+,FAM178B->chr2:97541620-97684175:-,family_with_sequence_similarity_178_member_B	JIMT1_BREAST	1	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ATP13A3--TMEM44	3	0	ATP13A3	4612	chr3:194206523:-	TMEM44	56741	chr3:194309368:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	LOCAL_REARRANGEMENT:-:[89309],ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,TMEM44->chr3:194308402-194354418:-,transmembrane_protein_44	JIMT1_BREAST	1	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	FAM222B--CRTC1	3	0	FAM222B	2441	chr17:27169700:-	CRTC1	24069	chr19:18860591:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+	JIMT1_BREAST	1	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	FLNB--RP11-755B10.2	3	0	FLNB	1457	chr3:57994583:+	RP11-755B10.2	58046	chr3:57640351:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,RP11-755B10.2->chr3:57614537-57640645:+	JIMT1_BREAST	1	1	0.0413	TRUE	0	1	0	1	1	TRUE	ACH-000711
JIMT1_BREAST	GTF2B--MUTYH	3	0	GTF2B	3250	chr1:89352944:-	MUTYH	20711	chr1:45795109:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	{Klijn_CCL:Breast=1},GTF2B->chr1:89318615-89357627:-,general_transcription_factor_IIB,MUTYH->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:45794835-45806142:-,mutY_DNA_glycosylase	JIMT1_BREAST	1	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ITCH--ASIP	3	0	ITCH	3377	chr20:32981687:+	ASIP	35434	chr20:32848171:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1|LUAD:1|LUSC:1|OV:1],LOCAL_REARRANGEMENT:+:[93891],ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,ASIP->agouti_signaling_protein,chr20:32782375-32857150:+	JIMT1_BREAST	1	1	0.0413	TRUE	0	3	0	2	3	TRUE	ACH-000711
JIMT1_BREAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JIMT1_BREAST	1	1	0.0413	FALSE	183	104	9	328	0	FALSE	ACH-000711
JIMT1_BREAST	NETO2--ITFG1	2	4	NETO2	7001	chr16:47143394:-	ITFG1	46716	chr16:47189689:-	ONLY_REF_SPLICE	YES	139	71	0.04	0.08	0.0275	0.055	GTEx_FI:{Brain=[count:3=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Amygdala=1},LOCAL_REARRANGEMENT:-:[10390],NETO2->chr16:47111614-47177908:-,neuropilin_and_tolloid_like_2,ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1	JIMT1_BREAST	0.04	0.08	0.0825	TRUE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	PRR16--CTD-2334D19.1	3	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	JIMT1_BREAST	1	1	0.0413	FALSE	56	216	12	147	0	FALSE	ACH-000711
JIMT1_BREAST	SBF2--RNF141	3	0	SBF2	1193	chr11:10315562:-	RNF141	72891	chr11:10536613:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	SBF2->SET_binding_factor_2,chr11:9800214-10315754:-,RNF141->chr11:10533225-10562777:-,ring_finger_protein_141	JIMT1_BREAST	1	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	TIMP3--MT-ND4	3	0	TIMP3	5621	chr22:33255392:+	MT-ND4	12727	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	JIMT1_BREAST	1	1	0.0413	FALSE	0	0	0	10	0	FALSE	ACH-000711
JIMT1_BREAST	NETO2--ITFG1	1	7	NETO2	6953	chr16:47143442:-	ITFG1	45598	chr16:47192901:-	ONLY_REF_SPLICE	NO	119	66	0.06	0.11	0.0138	0.0963	GTEx_FI:{Brain=[count:3=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Amygdala=1},LOCAL_REARRANGEMENT:-:[10390],NETO2->chr16:47111614-47177908:-,neuropilin_and_tolloid_like_2,ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1	JIMT1_BREAST	0.06	0.11	0.1101	TRUE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	ATP13A3--TMEM44	2	2	ATP13A3	4612	chr3:194206523:-	TMEM44	51909	chr3:194325174:-	ONLY_REF_SPLICE	YES	13	290	0.24	0.01	0.0275	0.0275	LOCAL_REARRANGEMENT:-:[89309],ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,TMEM44->chr3:194308402-194354418:-,transmembrane_protein_44	JIMT1_BREAST	0.01	0.24	0.055	FALSE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	BTBD10--TERT	1	6	BTBD10	1198	chr11:13484647:-	TERT	18193	chr5:1294781:-	ONLY_REF_SPLICE	YES	80	0	0.08	1	0.0138	0.0825	BTBD10->BTB_domain_containing_10,chr11:13409548-13484844:-,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	JIMT1_BREAST	0.08	1	0.0963	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	IVD--KNSTRN	1	6	IVD	9727	chr15:40708561:+	KNSTRN	26242	chr15:40681707:+	ONLY_REF_SPLICE	NO	53	233	0.12	0.03	0.0138	0.0825	LOCAL_REARRANGEMENT:+:[11239],IVD->chr15:40697686-40728146:+,isovaleryl-CoA_dehydrogenase,KNSTRN->chr15:40674922-40686447:+,kinetochore-localized_astrin/SPAG5_binding_protein	JIMT1_BREAST	0.03	0.12	0.0963	TRUE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	LTBP2--AC007956.1	2	2	LTBP2	9782	chr14:75016566:-	AC007956.1	39182	chr14:75159031:-	ONLY_REF_SPLICE	YES	115	50	0.03	0.07	0.0275	0.0275	LOCAL_REARRANGEMENT:-:[79573],LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2,AC007956.1->chr14:75158879-75179800:-	JIMT1_BREAST	0.03	0.07	0.055	TRUE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	AC027119.1--AC026167.1	2	1	AC027119.1	1674	chr3:6005202:+	AC026167.1	6915	chr3:6400588:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0275	0.0138	NEIGHBORS[24364],AC027119.1->chr3:6004529-6165807:+,AC026167.1->chr3:6190171-6407572:+	JIMT1_BREAST	0.75	1	0.0413	FALSE	1	37	1	9	0	FALSE	ACH-000711
JIMT1_BREAST	BTBD10--TERT	1	5	BTBD10	1198	chr11:13484647:-	TERT	20933	chr5:1282739:-	ONLY_REF_SPLICE	YES	80	1	0.07	0.86	0.0138	0.0688	BTBD10->BTB_domain_containing_10,chr11:13409548-13484844:-,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	JIMT1_BREAST	0.07	0.86	0.0826	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	FAM222B--CRTC1	2	1	FAM222B	4726	chr17:27139227:-	CRTC1	24069	chr19:18860591:+	ONLY_REF_SPLICE	YES	18	13	0.14	0.19	0.0275	0.0138	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+	JIMT1_BREAST	0.14	0.19	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	ITCH--ASIP	2	1	ITCH	15725	chr20:33045279:+	ASIP	35434	chr20:32848171:+	ONLY_REF_SPLICE	YES	306	0	0.01	1	0.0275	0.0138	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1|LUAD:1|LUSC:1|OV:1],LOCAL_REARRANGEMENT:+:[93891],ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,ASIP->agouti_signaling_protein,chr20:32782375-32857150:+	JIMT1_BREAST	0.01	1	0.0413	FALSE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	IVD--KNSTRN	2	1	IVD	6679	chr15:40705286:+	KNSTRN	24045	chr15:40678563:+	ONLY_REF_SPLICE	YES	70	202	0.04	0.01	0.0275	0.0138	LOCAL_REARRANGEMENT:+:[11239],IVD->chr15:40697686-40728146:+,isovaleryl-CoA_dehydrogenase,KNSTRN->chr15:40674922-40686447:+,kinetochore-localized_astrin/SPAG5_binding_protein	JIMT1_BREAST	0.01	0.04	0.0413	FALSE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	BRI3BP--UBC	2	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	JIMT1_BREAST	1	1	0.0275	TRUE	5	99	5	34	0	FALSE	ACH-000711
JIMT1_BREAST	CFL1--VARS2	2	0	CFL1	4089	chr11:65625568:-	VARS2	22514	chr6:30882587:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	CFL1->chr11:65590493-65629497:-,cofilin_1,VARS2->chr6:30876019-30894236:+,valyl-tRNA_synthetase_2,_mitochondrial	JIMT1_BREAST	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	DLGAP4--AAR2	2	0	DLGAP4	1177	chr20:34894434:+	AAR2	29465	chr20:34827743:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Brain_-_Frontal_Cortex_(BA9)=1},LOCAL_REARRANGEMENT:+:[35418],DLGAP4->chr20:34894258-35157040:+,discs_large_homolog_associated_protein_4,AAR2->AAR2_splicing_factor_homolog,chr20:34824381-34858840:+	JIMT1_BREAST	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	IVD--KNSTRN	1	4	IVD	8847	chr15:40707681:+	KNSTRN	24045	chr15:40678563:+	ONLY_REF_SPLICE	YES	66	202	0.07	0.02	0.0138	0.055	LOCAL_REARRANGEMENT:+:[11239],IVD->chr15:40697686-40728146:+,isovaleryl-CoA_dehydrogenase,KNSTRN->chr15:40674922-40686447:+,kinetochore-localized_astrin/SPAG5_binding_protein	JIMT1_BREAST	0.02	0.07	0.0688	TRUE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	KIAA1671--SGSM1	2	0	KIAA1671	1043	chr22:25348739:+	SGSM1	49106	chr22:25280020:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[25152],KIAA1671->KIAA1671,chr22:25348697-25593415:+,SGSM1->chr22:25202236-25323545:+,small_G_protein_signaling_modulator_1	JIMT1_BREAST	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	RP11-3B12.1--TNPO2	2	0	RP11-3B12.1	5854	chr7:124660467:+	TNPO2	32947	chr19:12826352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	RP11-3B12.1->chr7:124569927-124819369:+,TNPO2->chr19:12810008-12834825:-,transportin_2	JIMT1_BREAST	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	RP11-120D5.1--MID1	1	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	3	3	0.57	0.57	0.0138	0.0413	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JIMT1_BREAST	0.57	0.57	0.0551	FALSE	0	23	1	67	0	FALSE	ACH-000711
JIMT1_BREAST	AHNAK--EEF1G	1	2	AHNAK	26081	chr11:62259204:-	EEF1G	37735	chr11:62327309:-	ONLY_REF_SPLICE	YES	139	1910	0.02	0	0.0138	0.0275	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[3366],AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-,EEF1G->chr11:62327073-62342401:-,eukaryotic_translation_elongation_factor_1_gamma	JIMT1_BREAST	0	0.02	0.0413	FALSE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	FAM222B--CRTC1	1	2	FAM222B	4726	chr17:27139227:-	CRTC1	21869	chr19:18856633:+	ONLY_REF_SPLICE	NO	18	16	0.14	0.16	0.0138	0.0275	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+	JIMT1_BREAST	0.14	0.16	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	NANS--ANP32B	1	2	NANS	1202	chr9:100819222:+	ANP32B	20683	chr9:100773553:+	ONLY_REF_SPLICE	NO	436	1236	0.01	0	0.0138	0.0275	LOCAL_REARRANGEMENT:+:[40796],NANS->N-acetylneuraminate_synthase,chr9:100819021-100845357:+,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	JIMT1_BREAST	0	0.01	0.0413	FALSE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	ABCC8--MICALCL	1	1	ABCC8	3538	chr11:17491648:-	MICALCL	39014	chr11:12302480:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0138	0.0138	ABCC8->ATP_binding_cassette_subfamily_C_member_8,chr11:17414432-17498449:-,MICALCL->MICAL_C-terminal_like,chr11:12297627-12380691:+	JIMT1_BREAST	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	225	1	0.01	0.0138	0.0138	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	JIMT1_BREAST	0.01	1	0.0276	FALSE	347	1186	183	220	0	FALSE	ACH-000711
JIMT1_BREAST	DROSHA--RP11-100M12.3	1	1	DROSHA	13103	chr5:31495393:-	RP11-100M12.3	47586	chr15:27782266:-	ONLY_REF_SPLICE	YES	55	0	0.04	1	0.0138	0.0138	DROSHA->chr5:31400604-31532303:-,drosha_ribonuclease_III,RP11-100M12.3->chr15:27728181-27787137:-	JIMT1_BREAST	0.04	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	FLNB--SLMAP	1	1	FLNB	32206	chr3:58124256:+	SLMAP	88224	chr3:57911572:+	ONLY_REF_SPLICE	YES	665	450	0	0	0.0138	0.0138	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	JIMT1_BREAST	0	0	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	LTBP2--AC007956.1	1	1	LTBP2	8679	chr14:75017767:-	AC007956.1	39182	chr14:75159031:-	ONLY_REF_SPLICE	YES	128	50	0.02	0.04	0.0138	0.0138	LOCAL_REARRANGEMENT:-:[79573],LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2,AC007956.1->chr14:75158879-75179800:-	JIMT1_BREAST	0.02	0.04	0.0276	TRUE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	MIR205HG--EIF3E	1	1	MIR205HG	1589	chr1:209602753:+	EIF3E	23184	chr8:109241424:-	ONLY_REF_SPLICE	NO	384	631	0.01	0	0.0138	0.0138	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	JIMT1_BREAST	0	0.01	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	RP11-401O9.4--CTC-297N7.11	1	1	RP11-401O9.4	1094	chr17:10195230:+	CTC-297N7.11	12073	chr17:10511462:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0138	0.0138	NEIGHBORS[65218],RP11-401O9.4->chr17:10195137-10221243:+,CTC-297N7.11->chr17:10286461-10527203:+	JIMT1_BREAST	1	1	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0138	0.0138	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JIMT1_BREAST	0.5	1	0.0276	FALSE	407	2205	196	549	0	FALSE	ACH-000711
JIMT1_BREAST	RRAS2--COPB1	1	1	RRAS2	2538	chr11:14380309:-	COPB1	32894	chr11:14491109:-	ONLY_REF_SPLICE	YES	106	478	0.02	0	0.0138	0.0138	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[78934],RRAS2->Oncogene{Bushman},chr11:14299472-14386052:-,related_RAS_viral_(r-ras)_oncogene_homolog_2,COPB1->chr11:14464986-14521573:-,coatomer_protein_complex_subunit_beta_1	JIMT1_BREAST	0	0.02	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000711
JIMT1_BREAST	SFMBT1--CACNA1D	1	1	SFMBT1	1935	chr3:53079832:-	CACNA1D	57846	chr3:53777038:+	ONLY_REF_SPLICE	NO	18	13	0.1	0.13	0.0138	0.0138	SFMBT1->Scm-like_with_four_mbt_domains_1,chr3:52937588-53080766:-,CACNA1D->calcium_voltage-gated_channel_subunit_alpha1_D,chr3:53528683-53847760:+	JIMT1_BREAST	0.1	0.13	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000711
JIMT1_BREAST	TGFB1--P2RY11	1	1	TGFB1	7020	chr19:41838033:-	P2RY11	15878	chr19:10224309:+	ONLY_REF_SPLICE	YES	7	0	0.22	1	0.0138	0.0138	TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1,P2RY11->chr19:10222214-10226048:+,purinergic_receptor_P2Y11	JIMT1_BREAST	0.22	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000711
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	467	0	RPL14	4483	chr3:40503515:+	AC005540.3	8966	chr2:191745649:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.0088	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	2.0088	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	TIMM23B--LINC00843	220	106	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.98	0.9463	0.456	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHUEM1_ENDOMETRIUM	0.98	1	1.4023	TRUE	508	994	45	981	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	TIMM23--RP11-464F9.1	142	20	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	1040	10	0.13	0.94	0.6108	0.086	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JHUEM1_ENDOMETRIUM	0.13	0.94	0.6968	TRUE	519	3926	326	965	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	121	0	RPL14	4486	chr3:40503518:+	AC005540.3	8972	chr2:191745643:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5205	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.5205	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	117	1	MT-ND4	1151	chrM:10910:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	NO	17971	426	0.01	0.22	0.5033	0.0043	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0.01	0.22	0.5076	FALSE	230	193	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	PLXDC1--TAF13	108	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4646	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	JHUEM1_ENDOMETRIUM	1	1	0.4646	TRUE	7	10	0	216	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	83	0	RPL14	4492	chr3:40503524:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.357	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.357	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	73	0	RPL14	4486	chr3:40503518:+	AC005540.3	8975	chr2:191745640:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.314	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.314	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	70	0	RPL14	4489	chr3:40503521:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3011	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.3011	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	69	1	MT-ND4	1152	chrM:10911:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	18001	12	0	0.85	0.2968	0.0043	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.85	0.3011	FALSE	230	193	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	69	0	RPL14	4488	chr3:40503520:+	AC005540.3	8971	chr2:191745644:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2968	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.2968	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	68	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	23872	15	0	0.82	0.2925	0.0086	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.82	0.3011	FALSE	230	193	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	67	2	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	17971	0	0	1	0.2882	0.0086	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.2968	FALSE	230	193	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-TA--MT-TC	60	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2581	0.0258	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM1_ENDOMETRIUM	1	1	0.2839	FALSE	462	80	0	856	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	OR51S1--TP53I11	57	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2452	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	JHUEM1_ENDOMETRIUM	1	1	0.2452	TRUE	402	216	10	229	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	54	0	RPL14	4488	chr3:40503520:+	AC005540.3	8974	chr2:191745641:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2323	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.2323	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	25	81	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	7	0	0.94	1	0.1075	0.3484	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0.94	1	0.4559	FALSE	209	205	15	279	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	3	163	MT-ND4	1793	chrM:11552:+	MT-ND4L	5383	chrM:10474:+	INCL_NON_REF_SPLICE	YES	19661	0	0.01	1	0.0129	0.7011	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.01	1	0.714	FALSE	344	827	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	43	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	24082	20	0	0.69	0.185	0.0086	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.69	0.1936	FALSE	230	198	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	4	157	MT-ND4	1539	chrM:11298:+	MT-ND4L	5419	chrM:10510:+	INCL_NON_REF_SPLICE	YES	4872	0	0.03	1	0.0172	0.6753	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.03	1	0.6925	FALSE	344	827	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	3	152	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	3275	0	0.05	1	0.0129	0.6538	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.05	1	0.6667	FALSE	344	827	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	6	135	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	127	0	0.53	1	0.0258	0.5807	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.53	1	0.6065	FALSE	344	826	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	3	143	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	3562	0	0.04	1	0.0129	0.6151	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.04	1	0.628	FALSE	344	827	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	4	138	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	264	0	0.35	1	0.0172	0.5936	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.35	1	0.6108	FALSE	344	827	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	NPM1P24--SET	38	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1635	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JHUEM1_ENDOMETRIUM	1	1	0.1635	TRUE	0	0	0	434	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	ZNF654--HMGB2	38	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1635	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JHUEM1_ENDOMETRIUM	1	1	0.1635	TRUE	0	0	0	518	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	3	138	MT-ND4	1249	chrM:11008:+	MT-ND4L	5413	chrM:10504:+	INCL_NON_REF_SPLICE	YES	343	0	0.29	1	0.0129	0.5936	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.29	1	0.6065	FALSE	344	827	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	3	138	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	259	0	0.35	1	0.0129	0.5936	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.35	1	0.6065	FALSE	344	827	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	YWHAB--PKIG	32	22	YWHAB	4370	chr20:43530474:+	PKIG	21061	chr20:43243175:+	ONLY_REF_SPLICE	YES	3153	381	0.02	0.12	0.1376	0.0946	YWHAB->chr20:43514317-43537173:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_beta,PKIG->Oncogene{Bushman},chr20:43160426-43252888:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_gamma	JHUEM1_ENDOMETRIUM	0.02	0.12	0.2322	TRUE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	37	0	RPL14	4495	chr3:40503527:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1592	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.1592	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	3	132	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	179	0	0.43	1	0.0129	0.5678	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.43	1	0.5807	FALSE	344	826	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	27	26	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	36522	20	0	0.73	0.1161	0.1118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.73	0.2279	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	6	110	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	40	0	0.74	1	0.0258	0.4732	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.74	1	0.499	FALSE	344	826	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	DHX34--SAE1	33	0	DHX34	1072	chr19:47852609:+	SAE1	35712	chr19:47712416:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1419	0	DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+,SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+	JHUEM1_ENDOMETRIUM	1	1	0.1419	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	22	43	MT-ND4	1447	chrM:11206:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	YES	2240	0	0.03	1	0.0946	0.185	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.03	1	0.2796	FALSE	344	827	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	A1CF--CASC3	32	0	A1CF	22715	chr10:52561146:-	CASC3	27763	chr17:38296641:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1376	0	A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	JHUEM1_ENDOMETRIUM	1	1	0.1376	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	31	0	RPL14	4498	chr3:40503530:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1333	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.1333	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	19	47	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	30149	147	0	0.31	0.0817	0.2022	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.31	0.2839	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	21	36	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	36403	0	0	1	0.0903	0.1549	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.2452	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	29	0	RPL14	4488	chr3:40503520:+	AC005540.3	8977	chr2:191745638:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1247	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.1247	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	FAM65B--CMAHP	24	18	FAM65B	5965	chr6:24875919:-	CMAHP	48079	chr6:25097429:-	ONLY_REF_SPLICE	YES	19	12	0.69	0.78	0.1032	0.0774	LOCAL_REARRANGEMENT:-:[39310],FAM65B->chr6:24797601-25042238:-,family_with_sequence_similarity_65_member_B,CMAHP->chr6:25081548-25166793:-,cytidine_monophospho-N-acetylneuraminic_acid_hydroxylase,_pseudogene	JHUEM1_ENDOMETRIUM	0.69	0.78	0.1806	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	6	90	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	32	0	0.75	1	0.0258	0.3871	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.75	1	0.4129	FALSE	344	821	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	A1CF--CASC3	28	0	A1CF	22715	chr10:52561146:-	CASC3	27761	chr17:38296639:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1204	0	A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	JHUEM1_ENDOMETRIUM	1	1	0.1204	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	FAM65B--CMAHP	16	43	FAM65B	5965	chr6:24875919:-	CMAHP	46361	chr6:25106757:-	ONLY_REF_SPLICE	YES	19	5	0.76	0.92	0.0688	0.185	LOCAL_REARRANGEMENT:-:[39310],FAM65B->chr6:24797601-25042238:-,family_with_sequence_similarity_65_member_B,CMAHP->chr6:25081548-25166793:-,cytidine_monophospho-N-acetylneuraminic_acid_hydroxylase,_pseudogene	JHUEM1_ENDOMETRIUM	0.76	0.92	0.2538	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	13	55	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	33777	0	0	1	0.0559	0.2366	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.2925	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	19	31	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	34931	147	0	0.25	0.0817	0.1333	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.25	0.215	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	C15orf57--CBX3	18	32	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	395	160	0.11	0.24	0.0774	0.1376	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JHUEM1_ENDOMETRIUM	0.11	0.24	0.215	TRUE	267	562	48	632	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	3	88	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	250	0	0.27	1	0.0129	0.3785	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.27	1	0.3914	FALSE	344	826	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	5	79	MT-ND4	1503	chrM:11262:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	3562	0	0.02	1	0.0215	0.3398	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.02	1	0.3613	FALSE	344	827	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	3	85	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	554	0	0.14	1	0.0129	0.3656	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.14	1	0.3785	FALSE	344	827	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	10	56	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	32190	0	0	1	0.043	0.2409	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.2839	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	C15orf57--CBX3	17	24	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	383	164	0.1	0.2	0.0731	0.1032	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JHUEM1_ENDOMETRIUM	0.1	0.2	0.1763	TRUE	267	562	48	632	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND6--MT-TE	23	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0989	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM1_ENDOMETRIUM	1	1	0.0989	FALSE	499	1288	110	792	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	79	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	56	0	0.59	1	0.0129	0.3398	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0.59	1	0.3527	FALSE	213	207	15	279	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	22	0	RPL14	4501	chr3:40503533:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0946	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.0946	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	FAM65B--CMAHP	11	42	FAM65B	5965	chr6:24875919:-	CMAHP	46364	chr6:25106754:-	INCL_NON_REF_SPLICE	YES	19	5	0.74	0.91	0.0473	0.1807	LOCAL_REARRANGEMENT:-:[39310],FAM65B->chr6:24797601-25042238:-,family_with_sequence_similarity_65_member_B,CMAHP->chr6:25081548-25166793:-,cytidine_monophospho-N-acetylneuraminic_acid_hydroxylase,_pseudogene	JHUEM1_ENDOMETRIUM	0.74	0.91	0.228	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	16	22	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	36900	0	0	1	0.0688	0.0946	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.1634	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RP11-123O10.4--GRIP1	19	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0817	0.0387	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHUEM1_ENDOMETRIUM	1	1	0.1204	FALSE	416	2512	207	587	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	11	39	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	35972	0	0	1	0.0473	0.1678	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.2151	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	7	54	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	33973	0	0	1	0.0301	0.2323	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.2624	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	15	22	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	11	8	0.77	0.82	0.0645	0.0946	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHUEM1_ENDOMETRIUM	0.77	0.82	0.1591	FALSE	515	4851	409	746	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	NRIP1--AF127936.7	20	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.62	1	0.086	0.0043	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHUEM1_ENDOMETRIUM	0.62	1	0.0903	FALSE	292	1546	117	613	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	7	52	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	34496	0	0	1	0.0301	0.2237	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.2538	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	14	24	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	8	0.93	0.83	0.0602	0.1032	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHUEM1_ENDOMETRIUM	0.83	0.93	0.1634	FALSE	467	2173	244	435	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	20	0	RPL14	4485	chr3:40503517:+	AC005540.3	8959	chr2:191745656:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.086	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.086	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	11	35	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	36085	0	0	1	0.0473	0.1506	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.1979	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	6	55	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	33849	0	0	1	0.0258	0.2366	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.2624	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	5	58	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4387	147	0.01	0.3	0.0215	0.2495	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0.01	0.3	0.271	FALSE	216	209	16	281	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	NPM1P24--SET	19	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0817	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JHUEM1_ENDOMETRIUM	1	1	0.0817	TRUE	0	0	0	434	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	5	54	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	33623	0	0	1	0.0215	0.2323	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.2538	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	62	MT-ND4	2250	chrM:12009:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	4387	15	0.01	0.81	0.0129	0.2667	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0.01	0.81	0.2796	FALSE	216	209	16	281	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	55	MT-ND4	1952	chrM:11711:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	33623	0	0	1	0.0172	0.2366	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.2538	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	12	22	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	36913	0	0	1	0.0516	0.0946	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.1462	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	6	46	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	30149	344	0	0.13	0.0258	0.1979	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.13	0.2237	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	57	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	31891	0	0	1	0.0129	0.2452	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.2581	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	17	0	RPL14	4504	chr3:40503536:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0731	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.0731	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	55	MT-ND4	2212	chrM:11971:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9292	20	0.01	0.74	0.0129	0.2366	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0.01	0.74	0.2495	FALSE	222	212	16	282	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	54	MT-ND4	2149	chrM:11908:+	MT-ATP8	5476	chrM:8463:+	INCL_NON_REF_SPLICE	YES	17673	12	0	0.83	0.0129	0.2323	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.83	0.2452	FALSE	231	215	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	49	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	28937	147	0	0.27	0.0172	0.2108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.27	0.228	FALSE	231	215	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	16	0	RPL14	4487	chr3:40503519:+	AC005540.3	8967	chr2:191745648:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0688	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.0688	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	51	MT-ND4	1988	chrM:11747:+	MT-ATP8	5470	chrM:8457:+	INCL_NON_REF_SPLICE	YES	31664	0	0	1	0.0129	0.2194	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.2323	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	8	31	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	11	0	0.78	1	0.0344	0.1333	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHUEM1_ENDOMETRIUM	0.78	1	0.1677	FALSE	407	2205	196	549	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	7	34	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	34520	1066	0	0.04	0.0301	0.1462	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.04	0.1763	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND6--MT-TE	14	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	8	0	0.71	1	0.0602	0.0258	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM1_ENDOMETRIUM	0.71	1	0.086	FALSE	499	1288	110	792	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	49	MT-ND4	2122	chrM:11881:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	20792	20	0	0.72	0.0129	0.2108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.72	0.2237	FALSE	231	215	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	A1CF--CASC3	15	0	A1CF	22715	chr10:52561146:-	CASC3	27765	chr17:38296643:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0645	0	A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	JHUEM1_ENDOMETRIUM	1	1	0.0645	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	9	24	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	35847	1850	0	0.02	0.0387	0.1032	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.02	0.1419	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	15	0	RPL14	4507	chr3:40503539:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0645	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.0645	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	CAPN1--SPDYC	11	11	CAPN1	7959	chr11:64956217:+	SPDYC	22040	chr11:64939414:+	ONLY_REF_SPLICE	YES	2147	1	0.01	0.96	0.0473	0.0473	LOCAL_REARRANGEMENT:+:[7322],CAPN1->calpain_1,chr11:64948037-64979477:+,SPDYC->chr11:64937625-64940715:+,speedy/RINGO_cell_cycle_regulator_family_member_C	JHUEM1_ENDOMETRIUM	0.01	0.96	0.0946	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	5	34	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	35648	0	0	1	0.0215	0.1462	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.1677	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	37	MT-ND4	1812	chrM:11571:+	MT-ATP8	5458	chrM:8445:+	INCL_NON_REF_SPLICE	YES	35741	0	0	1	0.0172	0.1592	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.1764	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	13	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	26277	2138	0	0.01	0.0559	0.0043	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.01	0.0602	FALSE	231	204	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	FAM65B--CMAHP	4	36	FAM65B	5965	chr6:24875919:-	CMAHP	46396	chr6:25106722:-	ONLY_REF_SPLICE	YES	19	5	0.68	0.89	0.0172	0.1549	LOCAL_REARRANGEMENT:-:[39310],FAM65B->chr6:24797601-25042238:-,family_with_sequence_similarity_65_member_B,CMAHP->chr6:25081548-25166793:-,cytidine_monophospho-N-acetylneuraminic_acid_hydroxylase,_pseudogene	JHUEM1_ENDOMETRIUM	0.68	0.89	0.1721	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	36	MT-ND4	1788	chrM:11547:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	36164	0	0	1	0.0172	0.1549	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.1721	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND6--MT-TE	13	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0559	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM1_ENDOMETRIUM	1	1	0.0559	FALSE	499	1288	110	792	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	8	19	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	34931	2121	0	0.01	0.0344	0.0817	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.01	0.1161	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	5	31	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	35963	0	0	1	0.0215	0.1333	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.1548	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	6	26	MT-ND4	1783	chrM:11542:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	36451	147	0	0.18	0.0258	0.1118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.18	0.1376	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-TA--MT-TC	11	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0.0258	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM1_ENDOMETRIUM	1	1	0.0731	FALSE	462	80	0	856	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	8	17	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	23167	0	0	1	0.0344	0.0731	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0	1	0.1075	FALSE	344	827	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	8	17	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	258	0	0.09	1	0.0344	0.0731	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.09	1	0.1075	FALSE	344	826	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	7	20	MT-ND4	1540	chrM:11299:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	40465	147	0	0.16	0.0301	0.086	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.16	0.1161	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	36	MT-ND4	1754	chrM:11513:+	MT-ATP8	5382	chrM:8369:+	INCL_NON_REF_SPLICE	YES	36085	0	0	1	0.0129	0.1549	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.1678	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	36	MT-ND4	1774	chrM:11533:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	36494	0	0	1	0.0129	0.1549	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.1678	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	12	0	RPL14	4486	chr3:40503518:+	AC005540.3	8978	chr2:191745637:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.0516	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	31	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	36244	0	0	1	0.0172	0.1333	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.1505	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	10	6	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	33291	1850	0	0.01	0.043	0.0258	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.01	0.0688	FALSE	231	205	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	7	18	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	40171	1002	0	0.02	0.0301	0.0774	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.02	0.1075	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	3	34	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.93	1	0.0129	0.1462	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHUEM1_ENDOMETRIUM	0.93	1	0.1591	FALSE	192	492	57	212	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	NRIP1--AF127936.7	10	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	33	0	0.3	1	0.043	0.0172	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHUEM1_ENDOMETRIUM	0.3	1	0.0602	FALSE	125	705	46	456	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	10	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	28846	20	0	0.39	0.043	0.0129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.39	0.0559	FALSE	231	205	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	30	MT-ND4	1824	chrM:11583:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	34916	20	0	0.62	0.0129	0.129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.62	0.1419	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	5	22	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	37116	0	0	1	0.0215	0.0946	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.1161	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	3	30	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	187	0	0.15	1	0.0129	0.129	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.15	1	0.1419	FALSE	344	826	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	23	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	YES	36522	1133	0	0.02	0.0172	0.0989	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.02	0.1161	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	CLIP1--RSRC2	9	2	CLIP1	1112	chr12:122907068:-	RSRC2	46173	chr12:123006846:-	ONLY_REF_SPLICE	YES	50	417	0.18	0.03	0.0387	0.0086	LOCAL_REARRANGEMENT:-:[82011],CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-,RSRC2->arginine/serine-rich_coiled-coil_2,chr12:122989190-123011547:-	JHUEM1_ENDOMETRIUM	0.03	0.18	0.0473	TRUE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	7	10	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	31641	0	0	1	0.0301	0.043	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.0731	FALSE	231	205	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	21	MT-ND4	1531	chrM:11290:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	40681	12	0	0.68	0.0172	0.0903	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.68	0.1075	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	A1CF--CASC3	9	0	A1CF	22715	chr10:52561146:-	CASC3	27701	chr17:38296579:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	JHUEM1_ENDOMETRIUM	1	1	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	CAPN1--SPDYC	6	12	CAPN1	7959	chr11:64956217:+	SPDYC	21424	chr11:64938798:+	ONLY_REF_SPLICE	YES	2147	0	0.01	1	0.0258	0.0516	LOCAL_REARRANGEMENT:+:[7322],CAPN1->calpain_1,chr11:64948037-64979477:+,SPDYC->chr11:64937625-64940715:+,speedy/RINGO_cell_cycle_regulator_family_member_C	JHUEM1_ENDOMETRIUM	0.01	1	0.0774	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	20	MT-ND4	1452	chrM:11211:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	37393	0	0	1	0.0172	0.086	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.1032	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	TMEM205--RPS28	8	3	TMEM205	3471	chr19:11453607:-	RPS28	6969	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	960	0	0.01	1	0.0344	0.0129	TMEM205->chr19:11453452-11457194:-,transmembrane_protein_205,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JHUEM1_ENDOMETRIUM	0.01	1	0.0473	FALSE	0	1	0	3	1	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	8	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	23872	20	0	0.33	0.0344	0.0086	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.33	0.043	FALSE	230	193	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	21	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	39604	147	0	0.14	0.0129	0.0903	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.14	0.1032	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	17	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	37860	147	0	0.12	0.0172	0.0731	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.12	0.0903	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	8	1	RPL14	4510	chr3:40503542:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	5095	8	0	0.53	0.0344	0.0043	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	0	0.53	0.0387	FALSE	1	3	0	5	3	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	15	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	37595	15	0	0.56	0.0172	0.0645	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.56	0.0817	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	19	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	37448	0	0	1	0.0129	0.0817	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.0946	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND6--MT-TE	7	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0.0129	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM1_ENDOMETRIUM	1	1	0.043	FALSE	499	1288	110	792	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	7	2	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13325	0	0	1	0.0301	0.0086	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.0387	FALSE	230	193	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	14	MT-ND4	1572	chrM:11331:+	MT-ATP8	5534	chrM:8521:+	INCL_NON_REF_SPLICE	YES	38774	2130	0	0.01	0.0172	0.0602	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.01	0.0774	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	4	14	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	207	0	0.08	1	0.0172	0.0602	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.08	1	0.0774	FALSE	344	826	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	NRIP1--AF127936.7	6	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	46	0	0.21	1	0.0258	0.0258	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHUEM1_ENDOMETRIUM	0.21	1	0.0516	FALSE	164	806	69	479	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPS6--B2M	7	2	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	12834	0	0	1	0.0301	0.0086	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	JHUEM1_ENDOMETRIUM	0	1	0.0387	FALSE	0	0	0	28	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	17	MT-ND4	1510	chrM:11269:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	38544	20	0	0.5	0.0129	0.0731	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.5	0.086	FALSE	231	217	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	3	17	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	4643	0	0	1	0.0129	0.0731	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0	1	0.086	FALSE	344	827	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RP11-973F15.1--RP11-96B2.1	6	5	RP11-973F15.1	3763	chr8:123682599:-	RP11-96B2.1	7930	chr8:123499705:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0.0215	RP11-973F15.1->chr8:123682624-123706345:-,RP11-96B2.1->chr8:123497754-123502054:-	JHUEM1_ENDOMETRIUM	1	1	0.0473	TRUE	0	2	0	4	2	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	7	1	RPL14	4513	chr3:40503545:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	5138	8	0	0.5	0.0301	0.0043	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	0	0.5	0.0344	FALSE	1	3	0	5	3	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	7	1	RPL14	4516	chr3:40503548:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	5067	8	0	0.5	0.0301	0.0043	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	0	0.5	0.0344	FALSE	1	3	0	5	3	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	A1CF--CASC3	7	0	A1CF	22715	chr10:52561146:-	CASC3	27759	chr17:38296637:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	JHUEM1_ENDOMETRIUM	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	EIF1--RPS28	7	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JHUEM1_ENDOMETRIUM	1	1	0.0301	TRUE	0	0	0	81	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	CLIP1--RSRC2	6	2	CLIP1	1112	chr12:122907068:-	RSRC2	42884	chr12:123011548:-	INCL_NON_REF_SPLICE	YES	50	0	0.14	1	0.0258	0.0086	LOCAL_REARRANGEMENT:-:[82011],CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-,RSRC2->arginine/serine-rich_coiled-coil_2,chr12:122989190-123011547:-	JHUEM1_ENDOMETRIUM	0.14	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	6	2	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	12611	0	0	1	0.0258	0.0086	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.0344	FALSE	230	193	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	14	MT-ND4	1369	chrM:11128:+	MT-ATP8	5409	chrM:8396:+	INCL_NON_REF_SPLICE	YES	36122	0	0	1	0.0129	0.0602	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.0731	FALSE	231	216	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-TA--MT-TC	6	2	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0.0086	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM1_ENDOMETRIUM	1	1	0.0344	FALSE	462	80	0	856	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	A1CF--CASC3	6	0	A1CF	22715	chr10:52561146:-	CASC3	27767	chr17:38296645:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0	A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	JHUEM1_ENDOMETRIUM	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	FTH1--ACTB	6	0	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	JHUEM1_ENDOMETRIUM	1	1	0.0258	TRUE	1	0	0	97	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	5	4	MT-ND4	2016	chrM:11775:+	MT-ATP8	5580	chrM:8567:+	INCL_NON_REF_SPLICE	YES	29019	285	0	0.03	0.0215	0.0172	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.03	0.0387	FALSE	231	216	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND6--MT-TE	4	8	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	8	0	0.6	1	0.0172	0.0344	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM1_ENDOMETRIUM	0.6	1	0.0516	FALSE	499	1288	110	792	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	NPLOC4--OXLD1	4	8	NPLOC4	11048	chr17:79573717:-	OXLD1	35755	chr17:79632614:-	ONLY_REF_SPLICE	YES	562	225	0.02	0.05	0.0172	0.0344	LOCAL_REARRANGEMENT:-:[16571],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,OXLD1->chr17:79632066-79633665:-,oxidoreductase_like_domain_containing_1	JHUEM1_ENDOMETRIUM	0.02	0.05	0.0516	TRUE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	NPM1P24--SET	6	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JHUEM1_ENDOMETRIUM	1	1	0.0258	TRUE	0	0	0	434	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	5	3	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	YES	24926	0	0	1	0.0215	0.0129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.0344	FALSE	231	204	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	11	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	35469	2	0	0.88	0.0129	0.0473	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.88	0.0602	FALSE	231	216	16	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND6--MT-TE	5	3	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0215	0.0129	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM1_ENDOMETRIUM	1	1	0.0344	FALSE	499	1288	110	792	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	5	2	MT-ND4	1263	chrM:11022:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	27501	5	0	0.58	0.0215	0.0086	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.58	0.0301	FALSE	231	205	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	5	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	24122	147	0	0.05	0.0215	0.0086	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.05	0.0301	FALSE	230	198	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND6--MT-TE	5	2	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0215	0.0086	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM1_ENDOMETRIUM	1	1	0.0301	FALSE	499	1288	110	792	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-TA--MT-TC	4	6	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0172	0.0258	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM1_ENDOMETRIUM	1	1	0.043	FALSE	462	80	0	856	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND6--MT-TE	4	5	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	3	0	0.75	1	0.0172	0.0215	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM1_ENDOMETRIUM	0.75	1	0.0387	FALSE	499	1288	110	792	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	5	1	RPL14	4519	chr3:40503551:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	5067	8	0	0.43	0.0215	0.0043	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	0	0.43	0.0258	FALSE	1	3	0	5	3	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	EIF1--RPS28	5	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0215	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JHUEM1_ENDOMETRIUM	1	1	0.0215	TRUE	0	0	0	81	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-TA--MT-TC	3	8	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0129	0.0344	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM1_ENDOMETRIUM	1	1	0.0473	FALSE	462	80	0	856	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-TA--MT-TC	3	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0129	0.0344	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM1_ENDOMETRIUM	1	1	0.0473	FALSE	462	80	0	856	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-TA--MT-TY	5	0	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0215	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	JHUEM1_ENDOMETRIUM	1	1	0.0215	FALSE	13	214	14	42	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	JUP--MT-CO3	4	3	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	2090	28426	0	0	0.0172	0.0129	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	JHUEM1_ENDOMETRIUM	0	0	0.0301	FALSE	0	0	0	33	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	3	MT-ND4	1200	chrM:10959:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	NO	23282	0	0	1	0.0172	0.0129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.0301	FALSE	230	193	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	FTH1--ACTB	4	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	11958	3	0	0.67	0.0172	0.0086	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	JHUEM1_ENDOMETRIUM	0	0.67	0.0258	FALSE	1	0	0	97	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	2	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	25252	653	0	0.01	0.0172	0.0086	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.01	0.0258	FALSE	231	204	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	2	MT-ND4	1244	chrM:11003:+	MT-ATP8	5476	chrM:8463:+	INCL_NON_REF_SPLICE	YES	25218	12	0	0.33	0.0172	0.0086	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.33	0.0258	FALSE	231	204	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	6	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	31483	147	0	0.06	0.0129	0.0258	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.06	0.0387	FALSE	231	205	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND6--MT-TE	3	6	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.75	1	0.0129	0.0258	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM1_ENDOMETRIUM	0.75	1	0.0387	FALSE	499	1288	110	792	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	ALDOA--MT-CO3	4	1	ALDOA	8825	chr16:30078597:+	MT-CO3	15052	chrM:9252:+	INCL_NON_REF_SPLICE	YES	10027	0	0	1	0.0172	0.0043	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	JHUEM1_ENDOMETRIUM	0	1	0.0215	FALSE	0	0	0	5	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	ANO7--FARP2	4	1	ANO7	20467	chr2:242157796:+	FARP2	51409	chr2:242396162:+	ONLY_REF_SPLICE	YES	24	44	0.17	0.1	0.0172	0.0043	ANO7->anoctamin_7,chr2:242127924-242164792:+,FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+	JHUEM1_ENDOMETRIUM	0.1	0.17	0.0215	TRUE	0	0	0	2	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	FAM65B--CMAHP	1	13	FAM65B	3433	chr6:24911046:-	CMAHP	43833	chr6:25110331:-	ONLY_REF_SPLICE	YES	20	4	0.41	0.78	0.0043	0.0559	LOCAL_REARRANGEMENT:-:[39310],FAM65B->chr6:24797601-25042238:-,family_with_sequence_similarity_65_member_B,CMAHP->chr6:25081548-25166793:-,cytidine_monophospho-N-acetylneuraminic_acid_hydroxylase,_pseudogene	JHUEM1_ENDOMETRIUM	0.41	0.78	0.0602	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	LAPTM4B--CLDN4	4	1	LAPTM4B	3084	chr8:98817612:+	CLDN4	17526	chr7:73245327:+	INCL_NON_REF_SPLICE	YES	3905	195	0	0.03	0.0172	0.0043	LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta,CLDN4->Oncogene{Bushman},chr7:73213872-73247014:+,claudin_4	JHUEM1_ENDOMETRIUM	0	0.03	0.0215	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	1	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	24993	611	0	0.01	0.0172	0.0043	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.01	0.0215	FALSE	231	204	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	1	MT-ND4	1170	chrM:10929:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	19765	15	0	0.25	0.0172	0.0043	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.25	0.0215	FALSE	230	193	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	1	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	28346	2038	0	0	0.0172	0.0043	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0	0.0215	FALSE	231	205	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	3	5	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	48	0	0.14	1	0.0129	0.0215	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.14	1	0.0344	FALSE	344	826	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ND4L	3	5	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	528	0	0.01	1	0.0129	0.0215	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM1_ENDOMETRIUM	0.01	1	0.0344	FALSE	344	827	44	306	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL18--TMSB4X	4	1	RPL18	3813	chr19:49119981:-	TMSB4X	8221	chrX:12993238:+	INCL_NON_REF_SPLICE	YES	7743	0	0	1	0.0172	0.0043	RPL18->chr19:49118585-49122793:-,ribosomal_protein_L18,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	JHUEM1_ENDOMETRIUM	0	1	0.0215	FALSE	0	0	0	4	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	ANXA2--NARG2	4	0	ANXA2	11842	chr15:60678227:-	NARG2	54294	chr15:60728426:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	JHUEM1_ENDOMETRIUM	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	4	0	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0172	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	1	1	0.0172	FALSE	230	191	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0172	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM1_ENDOMETRIUM	1	1	0.0172	FALSE	462	80	0	856	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-TA--MT-TY	4	0	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0172	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	JHUEM1_ENDOMETRIUM	1	1	0.0172	FALSE	13	214	14	42	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-TA--MT-TY	4	0	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0172	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	JHUEM1_ENDOMETRIUM	1	1	0.0172	FALSE	13	214	14	42	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0172	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JHUEM1_ENDOMETRIUM	1	1	0.0172	TRUE	0	0	0	434	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	PRDX5--CALR	4	0	PRDX5	1254	chr11:64085813:+	CALR	7409	chr19:13049423:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0172	0	PRDX5->chr11:64085560-64089283:+,peroxiredoxin_5,CALR->calreticulin,chr19:13049392-13055303:+	JHUEM1_ENDOMETRIUM	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	3	MT-ND4	1262	chrM:11021:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	27458	0	0	1	0.0129	0.0129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.0258	FALSE	231	205	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	3	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	25252	0	0	1	0.0129	0.0129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.0258	FALSE	231	204	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	ALDOA--MT-CO3	3	2	ALDOA	10463	chr16:30080235:+	MT-CO3	15072	chrM:9272:+	INCL_NON_REF_SPLICE	YES	10224	2	0	0.71	0.0129	0.0086	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	JHUEM1_ENDOMETRIUM	0	0.71	0.0215	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	C6orf99--EZR-AS1	3	2	C6orf99	3588	chr6:159316372:+	EZR-AS1	9132	chr6:159239114:+	INCL_NON_REF_SPLICE	YES	48	0	0.09	1	0.0129	0.0086	LOCAL_REARRANGEMENT:+:[49346],C6orf99->chr6:159290971-159331385:+,chromosome_6_open_reading_frame_99,EZR-AS1->EZR_antisense_RNA_1,chr6:159239043-159241625:+	JHUEM1_ENDOMETRIUM	0.09	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	EZR--RSPH3	3	2	EZR	2248	chr6:159239114:-	RSPH3	22401	chr6:159404839:-	ONLY_REF_SPLICE	YES	6339	83	0	0.06	0.0129	0.0086	EZR->chr6:159186773-159240444:-,ezrin,RSPH3->chr6:159393903-159421219:-,radial_spoke_3_homolog	JHUEM1_ENDOMETRIUM	0	0.06	0.0215	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	2	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	23765	20	0	0.2	0.0129	0.0086	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.2	0.0215	FALSE	230	193	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	2	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	NO	24309	202	0	0.02	0.0129	0.0086	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.02	0.0215	FALSE	231	204	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	2	MT-ND4	1129	chrM:10888:+	MT-ATP8	5468	chrM:8455:+	INCL_NON_REF_SPLICE	YES	15525	0	0	1	0.0129	0.0086	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	1	0.0215	FALSE	230	193	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL18--TMSB4X	3	2	RPL18	4351	chr19:49119443:-	TMSB4X	8235	chrX:12993252:+	INCL_NON_REF_SPLICE	YES	6621	0	0	1	0.0129	0.0086	RPL18->chr19:49118585-49122793:-,ribosomal_protein_L18,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	JHUEM1_ENDOMETRIUM	0	1	0.0215	FALSE	0	0	0	4	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	1	MT-ND4	1152	chrM:10911:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	NO	18001	728	0	0.01	0.0129	0.0043	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.01	0.0172	FALSE	230	193	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	1	MT-ND4	1253	chrM:11012:+	MT-ATP8	5527	chrM:8514:+	INCL_NON_REF_SPLICE	YES	25821	2161	0	0	0.0129	0.0043	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0	0.0172	FALSE	231	204	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-ND4--MT-ATP8	3	1	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16924	147	0	0.03	0.0129	0.0043	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM1_ENDOMETRIUM	0	0.03	0.0172	FALSE	230	193	14	283	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RBM6--ZCWPW1	3	1	RBM6	1219	chr3:49977658:+	ZCWPW1	35266	chr7:100022759:-	ONLY_REF_SPLICE	YES	136	6	0.03	0.4	0.0129	0.0043	RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,ZCWPW1->chr7:99998449-100026615:-,zinc_finger_CW-type_and_PWWP_domain_containing_1	JHUEM1_ENDOMETRIUM	0.03	0.4	0.0172	TRUE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	A1CF--CASC3	3	0	A1CF	22715	chr10:52561146:-	CASC3	27711	chr17:38296589:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0129	0	A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	JHUEM1_ENDOMETRIUM	1	1	0.0129	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	A1CF--CASC3	3	0	A1CF	22715	chr10:52561146:-	CASC3	27717	chr17:38296595:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0129	0	A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	JHUEM1_ENDOMETRIUM	1	1	0.0129	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	C17orf76-AS1--HMGB1	3	0	C17orf76-AS1	1593	chr17:16342728:+	HMGB1	17950	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0	C17orf76-AS1->chr17:16342136-16381992:+,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	JHUEM1_ENDOMETRIUM	1	1	0.0129	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	CMTM8--CMTM7	3	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	JHUEM1_ENDOMETRIUM	1	1	0.0129	FALSE	118	557	29	88	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	MT-TA--MT-TY	3	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0129	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	JHUEM1_ENDOMETRIUM	1	1	0.0129	FALSE	13	214	14	42	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	OTUB1--COX8A	3	0	OTUB1	3602	chr11:63756224:+	COX8A	14254	chr11:63743697:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[9310],OTUB1->OTU_deubiquitinase,_ubiquitin_aldehyde_binding_1,chr11:63753325-63769283:+,COX8A->chr11:63742079-63744015:+,cytochrome_c_oxidase_subunit_8A	JHUEM1_ENDOMETRIUM	1	1	0.0129	TRUE	0	1	0	4	1	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	PAX8--ACTB	3	0	PAX8	13682	chr2:113977825:-	ACTB	25763	chr7:5568336:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0129	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,PAX8->Oncogene{Bushman},chr2:113973574-114036527:-,paired_box_8,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	JHUEM1_ENDOMETRIUM	1	1	0.0129	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPL14--AC005540.3	3	0	RPL14	4482	chr3:40503514:+	AC005540.3	8965	chr2:191745650:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0129	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JHUEM1_ENDOMETRIUM	1	1	0.0129	TRUE	1	3	0	5	3	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	ZNF331--ATG4D	3	0	ZNF331	6509	chr19:54041550:+	ATG4D	25859	chr19:10662721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0	ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331,ATG4D->autophagy_related_4D_cysteine_peptidase,chr19:10654571-10664094:+	JHUEM1_ENDOMETRIUM	1	1	0.0129	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	AC074212.6--STXBP1	2	3	AC074212.6	3030	chr19:46274933:+	STXBP1	26479	chr9:130444685:+	ONLY_REF_SPLICE	YES	24	237	0.17	0.02	0.0086	0.0129	AC074212.6->chr19:46271054-46275762:+,STXBP1->chr9:130374544-130457460:+,syntaxin_binding_protein_1	JHUEM1_ENDOMETRIUM	0.02	0.17	0.0215	TRUE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	FAM65B--CMAHP	1	7	FAM65B	2283	chr6:24936066:-	CMAHP	44355	chr6:25109809:-	ONLY_REF_SPLICE	YES	7	7	0.53	0.53	0.0043	0.0301	LOCAL_REARRANGEMENT:-:[39310],FAM65B->chr6:24797601-25042238:-,family_with_sequence_similarity_65_member_B,CMAHP->chr6:25081548-25166793:-,cytidine_monophospho-N-acetylneuraminic_acid_hydroxylase,_pseudogene	JHUEM1_ENDOMETRIUM	0.53	0.53	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	PRIM2--ZNF451	2	2	PRIM2	16101	chr6:57398317:+	ZNF451	47721	chr6:57006100:+	ONLY_REF_SPLICE	YES	112	93	0.03	0.04	0.0086	0.0086	PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2,ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451	JHUEM1_ENDOMETRIUM	0.03	0.04	0.0172	TRUE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	7	28	0.36	0.12	0.0086	0.0086	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHUEM1_ENDOMETRIUM	0.12	0.36	0.0172	FALSE	16	356	14	466	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RP11-120D5.1--MID1	2	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	28	0.36	0.12	0.0086	0.0086	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHUEM1_ENDOMETRIUM	0.12	0.36	0.0172	FALSE	0	48	1	163	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RP11-384J4.2--NOVA1-AS1	2	1	RP11-384J4.2	2280	chr14:27312862:+	NOVA1-AS1	20652	chr14:27267120:+	ONLY_REF_SPLICE	YES	4	3	0.43	0.5	0.0086	0.0043	LOCAL_REARRANGEMENT:+:[30261],RP11-384J4.2->chr14:27305934-27629626:+,NOVA1-AS1->NOVA1_antisense_RNA_1_(head_to_head),chr14:27067618-27275673:+	JHUEM1_ENDOMETRIUM	0.43	0.5	0.0129	TRUE	0	0	0	2	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RPSAP52--HMGA2	2	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	2	553	0.6	0.01	0.0086	0.0043	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	JHUEM1_ENDOMETRIUM	0.01	0.6	0.0129	FALSE	0	59	0	125	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	ACACA--HNRNPH1	2	0	ACACA	10478	chr17:35715942:-	HNRNPH1	89153	chr5:179044111:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	BSG--GZMM	2	0	BSG	2405	chr19:572701:+	GZMM	14559	chr19:547280:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[21378],BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,GZMM->chr19:544034-549919:+,granzyme_M	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	5	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	CXXC1--SP1	2	0	CXXC1	1718	chr18:47813957:-	SP1	11446	chr12:53775443:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	CXXC1->CXXC_finger_protein_1,chr18:47808713-47814674:-,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	ERBB4--SP1	2	0	ERBB4	1393	chr2:213403173:-	SP1	47560	chr12:53775443:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	EXPH5--KANSL1L	2	0	EXPH5	1321	chr11:108464145:-	KANSL1L	25588	chr2:211019335:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	EXPH5->chr11:108376158-108464465:-,exophilin_5,KANSL1L->KAT8_regulatory_NSL_complex_subunit_1_like,chr2:210886147-211036107:-	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	EZR--RSPH3	2	0	EZR	2248	chr6:159239114:-	RSPH3	25887	chr6:159399378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	EZR->chr6:159186773-159240444:-,ezrin,RSPH3->chr6:159393903-159421219:-,radial_spoke_3_homolog	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	3	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	HEATR5B--GSK3B	2	0	HEATR5B	2054	chr2:37310432:-	GSK3B	50627	chr3:119635021:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	HEATR5B->HEAT_repeat_containing_5B,chr2:37195526-37311485:-,GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	KPNA1--GSK3B	2	0	KPNA1	2682	chr3:122215284:-	GSK3B	29305	chr3:119666198:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1,GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MFGE8--ACOX3	2	0	MFGE8	1165	chr15:89456478:-	ACOX3	23339	chr4:8401379:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	MFGE8->chr15:89441916-89456642:-,milk_fat_globule-EGF_factor_8_protein,ACOX3->acyl-CoA_oxidase_3,_pristanoyl,chr4:8368009-8442450:-	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	MSMO1--LTV1	2	0	MSMO1	1142	chr4:166248916:+	LTV1	19953	chr6:144184223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	MSMO1->chr4:166248775-166264312:+,methylsterol_monooxygenase_1,LTV1->LTV1_ribosome_biogenesis_factor,chr6:144164481-144184949:+	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	PCBD2--AACS	2	0	PCBD2	1318	chr5:134240913:+	AACS	45718	chr12:125612707:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	PCBD2->chr5:134240596-134343649:+,pterin-4_alpha-carbinolamine_dehydratase_2,AACS->acetoacetyl-CoA_synthetase,chr12:125549925-125627873:+	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	PDIA5--CCDC14	2	0	PDIA5	18758	chr3:122928246:+	CCDC14	33371	chr3:123667979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	PDIA5->chr3:122785909-122944074:+,protein_disulfide_isomerase_family_A_member_5,CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	PHACTR4--SESN2	2	0	PHACTR4	2277	chr1:28733974:+	SESN2	28247	chr1:28595694:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	LOCAL_REARRANGEMENT:+:[87112],PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4,SESN2->chr1:28586038-28609002:+,sestrin_2	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	PIGF--MYO10	2	0	PIGF	6652	chr2:46819614:-	MYO10	33581	chr5:16755017:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	PIGF->chr2:46808076-46844258:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_F,MYO10->chr5:16665395-16936372:-,myosin_X	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	PLGRKT--FAM204A	2	0	PLGRKT	2310	chr9:5436569:-	FAM204A	16101	chr10:120085755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	PLGRKT->chr9:5357973-5437878:-,plasminogen_receptor_with_a_C-terminal_lysine,FAM204A->chr10:120065401-120101840:-,family_with_sequence_similarity_204_member_A	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	1	0	17	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	SLC39A9--TBC1D5	2	0	SLC39A9	3560	chr14:69890919:+	TBC1D5	59241	chr3:17255862:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	SLC39A9->chr14:69864732-69929105:+,solute_carrier_family_39_member_9,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	SPATC1L--FAM207A	2	0	SPATC1L	1121	chr21:47604270:-	FAM207A	12635	chr21:46380015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	SPATC1L->chr21:47581062-47604390:-,spermatogenesis_and_centriole_associated_1-like,FAM207A->chr21:46359925-46396904:+,family_with_sequence_similarity_207_member_A	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	TPCN2--TOLLIP	2	0	TPCN2	1210	chr11:68816574:+	TOLLIP	38613	chr11:1298483:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0	TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,TOLLIP->chr11:1295601-1330884:-,toll_interacting_protein	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	RP11-384J4.2--NOVA1-AS1	1	3	RP11-384J4.2	2280	chr14:27312862:+	NOVA1-AS1	13057	chr14:27106401:+	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0043	0.0129	LOCAL_REARRANGEMENT:+:[30261],RP11-384J4.2->chr14:27305934-27629626:+,NOVA1-AS1->NOVA1_antisense_RNA_1_(head_to_head),chr14:27067618-27275673:+	JHUEM1_ENDOMETRIUM	0.5	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000928
JHUEM1_ENDOMETRIUM	CYTH3--FAM220A	1	2	CYTH3	1171	chr7:6312105:-	FAM220A	22473	chr7:6370866:-	ONLY_REF_SPLICE	YES	548	98	0.01	0.03	0.0043	0.0086	LOCAL_REARRANGEMENT:-:[56765],CYTH3->chr7:6201407-6312275:-,cytohesin_3,FAM220A->chr7:6369040-6388612:-,family_with_sequence_similarity_220_member_A	JHUEM1_ENDOMETRIUM	0.01	0.03	0.0129	FALSE	0	1	0	2	1	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	ANXA2--NARG2	1	1	ANXA2	27937	chr15:60641274:-	NARG2	48568	chr15:60734744:-	ONLY_REF_SPLICE	NO	11971	173	0	0.01	0.0043	0.0043	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	JHUEM1_ENDOMETRIUM	0	0.01	0.0086	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	CBX5--PHF20	1	1	CBX5	1095	chr12:54673792:-	PHF20	25195	chr20:34389413:+	ONLY_REF_SPLICE	YES	145	2	0.01	0.5	0.0043	0.0043	CBX5->chr12:54624724-54673886:-,chromobox_5,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	JHUEM1_ENDOMETRIUM	0.01	0.5	0.0086	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	CMTM8--CMTM7	1	1	CMTM8	3732	chr3:32409480:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	145	414	0.01	0	0.0043	0.0043	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	JHUEM1_ENDOMETRIUM	0	0.01	0.0086	FALSE	3	14	0	5	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	CTNND1--ZDHHC5	1	1	CTNND1	2585	chr11:57529518:+	ZDHHC5	35329	chr11:57449894:+	ONLY_REF_SPLICE	YES	1009	730	0	0	0.0043	0.0043	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},YOSHIHARA_TCGA_num_samples[LUAD:2],LOCAL_REARRANGEMENT:+:[52056],CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,ZDHHC5->chr11:57435219-57468659:+,zinc_finger_DHHC-type_containing_5	JHUEM1_ENDOMETRIUM	0	0	0.0086	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	DTYMK--ATG4B	1	1	DTYMK	1338	chr2:242626069:-	ATG4B	21075	chr2:242606060:+	ONLY_REF_SPLICE	YES	917	694	0	0	0.0043	0.0043	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[1885],DTYMK->chr2:242615157-242626406:-,deoxythymidylate_kinase,ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+	JHUEM1_ENDOMETRIUM	0	0	0.0086	FALSE	0	0	0	5	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	EIF2AK2--TOP2A	1	1	EIF2AK2	12755	chr2:37349649:-	TOP2A	30573	chr17:38572320:-	ONLY_REF_SPLICE	YES	265	824	0.01	0	0.0043	0.0043	EIF2AK2->Oncogene{Bushman},chr2:37326353-37384208:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_2,TOP2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38544768-38574202:-,topoisomerase_(DNA)_II_alpha	JHUEM1_ENDOMETRIUM	0	0.01	0.0086	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	EZR--OSTCP1	1	1	EZR	2248	chr6:159239114:-	OSTCP1	18679	chr6:159278403:-	ONLY_REF_SPLICE	YES	6339	0	0	1	0.0043	0.0043	LOCAL_REARRANGEMENT:-:[21705],EZR->chr6:159186773-159240444:-,ezrin,OSTCP1->chr6:159262149-159278664:-,oligosaccharyltransferase_complex_subunit_pseudogene_1	JHUEM1_ENDOMETRIUM	0	1	0.0086	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	H2AFV--GNAS	1	1	H2AFV	4437	chr7:44875128:-	GNAS	28948	chr20:57470667:+	ONLY_REF_SPLICE	YES	2775	1916	0	0	0.0043	0.0043	H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	JHUEM1_ENDOMETRIUM	0	0	0.0086	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	HNRNPA2B1--IVNS1ABP	1	1	HNRNPA2B1	1958	chr7:26240192:-	IVNS1ABP	21060	chr1:185274775:-	ONLY_REF_SPLICE	YES	5642	592	0	0	0.0043	0.0043	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	JHUEM1_ENDOMETRIUM	0	0	0.0086	FALSE	0	0	0	4	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	ITGB1BP1--CPSF3	1	1	ITGB1BP1	5560	chr2:9554307:-	CPSF3	24975	chr2:9580620:+	ONLY_REF_SPLICE	YES	601	472	0	0	0.0043	0.0043	LOCAL_INVERSION:-:+:[21],ITGB1BP1->chr2:9543604-9563676:-,integrin_subunit_beta_1_binding_protein_1,CPSF3->chr2:9563697-9613230:+,cleavage_and_polyadenylation_specific_factor_3	JHUEM1_ENDOMETRIUM	0	0	0.0086	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	KRI1--KPNA3	1	1	KRI1	6588	chr19:10670035:-	KPNA3	16026	chr13:50321129:-	ONLY_REF_SPLICE	YES	249	372	0.01	0.01	0.0043	0.0043	KRI1->KRI1_homolog,chr19:10663761-10676713:-,KPNA3->chr13:50273447-50367057:-,karyopherin_subunit_alpha_3	JHUEM1_ENDOMETRIUM	0.01	0.01	0.0086	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	PDCD11--NT5C2	1	1	PDCD11	2196	chr10:105158285:+	NT5C2	57356	chr10:104850753:-	ONLY_REF_SPLICE	YES	277	1067	0.01	0	0.0043	0.0043	PDCD11->chr10:105156405-105206049:+,programmed_cell_death_11,NT5C2->5'-nucleotidase,_cytosolic_II,chr10:104845940-104953056:-	JHUEM1_ENDOMETRIUM	0	0.01	0.0086	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	PHACTR4--SFPQ	1	1	PHACTR4	2277	chr1:28733974:+	SFPQ	40101	chr1:35643637:-	ONLY_REF_SPLICE	YES	173	250	0.01	0.01	0.0043	0.0043	PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	JHUEM1_ENDOMETRIUM	0.01	0.01	0.0086	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	PROSC--DAP3	1	1	PROSC	2996	chr8:37623873:+	DAP3	27888	chr1:155708400:+	ONLY_REF_SPLICE	YES	663	55	0	0.04	0.0043	0.0043	GTEx_FI:{Muscle=[count:1=pct:0.4],Vagina=[count:1=pct:1.8]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Vagina=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),DAP3->chr1:155657751-155708801:+,death_associated_protein_3	JHUEM1_ENDOMETRIUM	0	0.04	0.0086	FALSE	2	0	0	4	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	PROSC--SRPK1	1	1	PROSC	2996	chr8:37623873:+	SRPK1	24527	chr6:35837678:-	ONLY_REF_SPLICE	YES	663	349	0	0.01	0.0043	0.0043	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-	JHUEM1_ENDOMETRIUM	0	0.01	0.0086	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	PRSS23--TMEM135	1	1	PRSS23	8412	chr11:86534635:+	TMEM135	33802	chr11:87006824:+	ONLY_REF_SPLICE	NO	33	204	0.06	0.01	0.0043	0.0043	NEIGHBORS[84934],PRSS23->chr11:86502101-86663952:+,protease,_serine_23,TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135	JHUEM1_ENDOMETRIUM	0.01	0.06	0.0086	FALSE	0	0	0	2	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RAB1A--XPO1	1	1	RAB1A	1214	chr2:65357027:-	XPO1	17984	chr2:61761038:-	ONLY_REF_SPLICE	YES	3607	671	0	0	0.0043	0.0043	Mitelman{DLBL=1},RAB1A->Oncogene{Bushman},RAB1A,_member_RAS_oncogene_family,chr2:65297835-65357240:-,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	JHUEM1_ENDOMETRIUM	0	0	0.0086	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	RPN2--AP000304.12	1	1	RPN2	3154	chr20:35812776:+	AP000304.12	25753	chr21:35281515:-	ONLY_REF_SPLICE	NO	3565	0	0	1	0.0043	0.0043	RPN2->chr20:35806813-35870022:+,ribophorin_II,AP000304.12->chr21:34956993-35284635:-	JHUEM1_ENDOMETRIUM	0	1	0.0086	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	SALL1--CXADR	1	1	SALL1	1202	chr16:51185077:-	CXADR	15020	chr21:18919345:+	ONLY_REF_SPLICE	YES	49	1309	0.04	0	0.0043	0.0043	SALL1->chr16:51169886-51185278:-,spalt-like_transcription_factor_1,CXADR->chr21:18884700-18965897:+,coxsackie_virus_and_adenovirus_receptor	JHUEM1_ENDOMETRIUM	0	0.04	0.0086	FALSE	0	0	0	1	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0043	0.0043	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHUEM1_ENDOMETRIUM	1	1	0.0086	TRUE	62	24	1	171	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	USO1--G3BP2	1	1	USO1	1293	chr4:76650069:+	G3BP2	34605	chr4:76587233:-	ONLY_REF_SPLICE	YES	210	1623	0.01	0	0.0043	0.0043	LOCAL_INVERSION:+:-:[68],USO1->USO1_vesicle_transport_factor,chr4:76649777-76735382:+,G3BP2->G3BP_stress_granule_assembly_factor_2,chr4:76567966-76649709:-	JHUEM1_ENDOMETRIUM	0	0.01	0.0086	FALSE	0	0	0	3	0	FALSE	ACH-000928
JHUEM1_ENDOMETRIUM	USP42--CYTH3	1	1	USP42	4177	chr7:6155154:+	CYTH3	28940	chr7:6230162:-	ONLY_REF_SPLICE	YES	83	672	0.02	0	0.0043	0.0043	LOCAL_INVERSION:+:-:[212],USP42->chr7:6144515-6201195:+,ubiquitin_specific_peptidase_42,CYTH3->chr7:6201407-6312275:-,cytohesin_3	JHUEM1_ENDOMETRIUM	0	0.02	0.0086	FALSE	0	0	0	1	0	FALSE	ACH-000928
MG63_BONE	DNER--ELL2	298	172	DNER	6135	chr2:230450574:-	ELL2	26965	chr5:95242486:-	ONLY_REF_SPLICE	YES	307	255	0.6	0.65	4.2651	2.4617	{Klijn_CCL:Sarcomatoid=1},DNER->chr2:230222345-230579274:-,delta/notch_like_EGF_repeat_containing,ELL2->chr5:95220802-95297775:-,elongation_factor_for_RNA_polymerase_II_2	MG63_BONE	0.6	0.65	6.7268	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	TP53--VAV1	244	33	TP53	1162	chr17:7590695:-	VAV1	36472	chr19:6857065:+	ONLY_REF_SPLICE	YES	0	0	1	1	3.4922	0.4723	TP53->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr17:7565097-7590856:-,tumor_protein_p53,VAV1->Oncogene{Bushman},chr19:6772725-6857377:+,vav_guanine_nucleotide_exchange_factor_1	MG63_BONE	1	1	3.9645	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MTAP--BNC2	116	72	MTAP	9899	chr9:21854869:+	BNC2	32978	chr9:16437522:-	ONLY_REF_SPLICE	YES	0	10	1	0.95	1.6602	1.0305	{Klijn_CCL:Sarcomatoid=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,BNC2->basonuclin_2,chr9:16409501-16870841:-	MG63_BONE	0.95	1	2.6907	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	ELL2--TRIP12	109	51	ELL2	2545	chr5:95278706:-	TRIP12	62537	chr2:230634041:-	ONLY_REF_SPLICE	YES	320	168	0.33	0.49	1.5601	0.7299	{Klijn_CCL:Sarcomatoid=1},ELL2->chr5:95220802-95297775:-,elongation_factor_for_RNA_polymerase_II_2,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	MG63_BONE	0.33	0.49	2.29	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	TFG--GPR128	104	45	TFG	5019	chr3:100438902:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	301	0	0.33	1	1.4885	0.6441	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	MG63_BONE	0.33	1	2.1326	TRUE	12	123	7	17	0	FALSE	ACH-000359
MG63_BONE	TIMM23B--LINC00843	77	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1021	0.2433	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MG63_BONE	0.99	1	1.3454	TRUE	508	994	45	981	0	FALSE	ACH-000359
MG63_BONE	TP53--EMR1	72	19	TP53	1162	chr17:7590695:-	EMR1	16174	chr19:6890492:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.0305	0.2719	TP53->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr17:7565097-7590856:-,tumor_protein_p53,EMR1->chr19:6887577-6940470:+	MG63_BONE	1	1	1.3024	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	EXT1--RP11-94A24.1	70	23	EXT1	2769	chr8:119122324:-	RP11-94A24.1	24457	chr8:123429261:-	ONLY_REF_SPLICE	YES	753	1	0.11	0.99	1.0019	0.3292	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,RP11-94A24.1->chr8:123426571-123440790:-	MG63_BONE	0.11	0.99	1.3311	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	ELL2--TRIP12	49	73	ELL2	4915	chr5:95249475:-	TRIP12	62537	chr2:230634041:-	ONLY_REF_SPLICE	YES	252	168	0.33	0.42	0.7013	1.0448	{Klijn_CCL:Sarcomatoid=1},ELL2->chr5:95220802-95297775:-,elongation_factor_for_RNA_polymerase_II_2,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	MG63_BONE	0.33	0.42	1.7461	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	EXT1--RP11-96B2.1	52	8	EXT1	2769	chr8:119122324:-	RP11-96B2.1	24517	chr8:123499705:-	ONLY_REF_SPLICE	YES	753	0	0.07	1	0.7442	0.1145	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,RP11-96B2.1->chr8:123497754-123502054:-	MG63_BONE	0.07	1	0.8587	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	ST3GAL1--RP11-946L20.2	45	15	ST3GAL1	5010	chr8:134558017:-	RP11-946L20.2	28672	chr8:112017878:-	ONLY_REF_SPLICE	YES	123	0	0.33	1	0.6441	0.2147	ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,RP11-946L20.2->chr8:111949919-112039662:-	MG63_BONE	0.33	1	0.8588	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	DNER--ELL2	4	172	DNER	7269	chr2:230444927:-	ELL2	26965	chr5:95242486:-	INCL_NON_REF_SPLICE	YES	324	255	0.35	0.41	0.0572	2.4617	{Klijn_CCL:Sarcomatoid=1},DNER->chr2:230222345-230579274:-,delta/notch_like_EGF_repeat_containing,ELL2->chr5:95220802-95297775:-,elongation_factor_for_RNA_polymerase_II_2	MG63_BONE	0.35	0.41	2.5189	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	TIMM23--RP11-464F9.1	43	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	211	1	0.18	0.98	0.6154	0.0286	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MG63_BONE	0.18	0.98	0.644	TRUE	519	3926	326	965	0	FALSE	ACH-000359
MG63_BONE	ELL2--TRIP12	24	73	ELL2	4911	chr5:95249479:-	TRIP12	62537	chr2:230634041:-	INCL_NON_REF_SPLICE	YES	222	168	0.3	0.37	0.3435	1.0448	{Klijn_CCL:Sarcomatoid=1},ELL2->chr5:95220802-95297775:-,elongation_factor_for_RNA_polymerase_II_2,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	MG63_BONE	0.3	0.37	1.3883	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	CLIP4--EPHB4	33	17	CLIP4	15063	chr2:29375694:+	EPHB4	36359	chr7:100417918:-	ONLY_REF_SPLICE	YES	22	32	0.69	0.61	0.4723	0.2433	{Klijn_CCL:Sarcomatoid=1},CLIP4->CAP-Gly_domain_containing_linker_protein_family_member_4,chr2:29320571-29412509:+,EPHB4->EPH_receptor_B4,chr7:100400187-100425121:-	MG63_BONE	0.61	0.69	0.7156	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MTAP--BNC2	16	73	MTAP	9899	chr9:21854869:+	BNC2	32957	chr9:16437543:-	INCL_NON_REF_SPLICE	YES	0	10	1	0.9	0.229	1.0448	{Klijn_CCL:Sarcomatoid=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,BNC2->basonuclin_2,chr9:16409501-16870841:-	MG63_BONE	0.9	1	1.2738	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	OR51S1--TP53I11	32	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.458	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	MG63_BONE	1	1	0.458	TRUE	402	216	10	229	0	FALSE	ACH-000359
MG63_BONE	MT-TA--MT-TC	30	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4294	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MG63_BONE	1	1	0.4294	FALSE	462	80	0	856	0	FALSE	ACH-000359
MG63_BONE	PLXDC1--TAF13	30	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4294	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	MG63_BONE	1	1	0.4294	TRUE	7	10	0	216	0	FALSE	ACH-000359
MG63_BONE	STX2--GCNT2	26	14	STX2	9724	chr12:131283070:-	GCNT2	19070	chr6:10509320:+	ONLY_REF_SPLICE	YES	50	0	0.44	1	0.3721	0.2004	STX2->chr12:131274145-131323811:-,syntaxin_2,GCNT2->chr6:10492456-10629601:+,glucosaminyl_(N-acetyl)_transferase_2,_I-branching_enzyme_(I_blood_group)	MG63_BONE	0.44	1	0.5725	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	RP11-680G10.1--GSE1	27	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.88	0.3864	0.1288	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MG63_BONE	0.88	1	0.5152	TRUE	458	1351	185	561	0	FALSE	ACH-000359
MG63_BONE	MTAP--BNC2	11	72	MTAP	9899	chr9:21854869:+	BNC2	32965	chr9:16437535:-	INCL_NON_REF_SPLICE	YES	0	10	1	0.89	0.1574	1.0305	{Klijn_CCL:Sarcomatoid=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,BNC2->basonuclin_2,chr9:16409501-16870841:-	MG63_BONE	0.89	1	1.1879	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	HSP90AB1--MT-RNR2	26	4	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	9496	0	0	1	0.3721	0.0572	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MG63_BONE	0	1	0.4293	FALSE	13	9	0	364	0	FALSE	ACH-000359
MG63_BONE	EXT1--ZDHHC21	18	8	EXT1	2769	chr8:119122324:-	ZDHHC21	34680	chr9:14619680:-	ONLY_REF_SPLICE	YES	753	288	0.03	0.08	0.2576	0.1145	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,ZDHHC21->chr9:14611069-14693469:-,zinc_finger_DHHC-type_containing_21	MG63_BONE	0.03	0.08	0.3721	TRUE	0	0	0	1	0	FALSE	ACH-000359
MG63_BONE	MT-ND6--MT-TE	18	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2576	0.0286	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MG63_BONE	1	1	0.2862	FALSE	499	1288	110	792	0	FALSE	ACH-000359
MG63_BONE	HSPBP1--ZSWIM6	18	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2576	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	MG63_BONE	1	1	0.2576	TRUE	47	32	1	28	0	FALSE	ACH-000359
MG63_BONE	MT-ND6--MT-TE	15	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.2147	0.1574	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MG63_BONE	0.93	1	0.3721	FALSE	499	1288	110	792	0	FALSE	ACH-000359
MG63_BONE	RP11-680G10.1--GSE1	17	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	24	1	0.45	0.2433	0.0429	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MG63_BONE	0.45	1	0.2862	TRUE	465	1949	224	605	0	FALSE	ACH-000359
MG63_BONE	RP11-96H19.1--RP11-446N19.1	16	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.229	0.0716	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MG63_BONE	0.91	1	0.3006	FALSE	515	4851	409	746	0	FALSE	ACH-000359
MG63_BONE	TRAPPC9--COL22A1	16	3	TRAPPC9	9369	chr8:141407719:-	COL22A1	129703	chr8:139617012:-	ONLY_REF_SPLICE	YES	16	0	0.54	1	0.229	0.0429	{Klijn_CCL:Sarcomatoid=1},TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,COL22A1->chr8:139600478-139926249:-,collagen_type_XXII_alpha_1	MG63_BONE	0.54	1	0.2719	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	ELL2--TRIP12	3	54	ELL2	3751	chr5:95255128:-	TRIP12	62537	chr2:230634041:-	ONLY_REF_SPLICE	YES	279	168	0.17	0.25	0.0429	0.7729	{Klijn_CCL:Sarcomatoid=1},ELL2->chr5:95220802-95297775:-,elongation_factor_for_RNA_polymerase_II_2,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	MG63_BONE	0.17	0.25	0.8158	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	HSP90AB1--MT-RNR2	13	5	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	9566	0	0	1	0.1861	0.0716	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MG63_BONE	0	1	0.2577	FALSE	13	9	0	364	0	FALSE	ACH-000359
MG63_BONE	MROH1--PLEC	11	4	MROH1	18307	chr8:145278133:+	PLEC	42282	chr8:145049543:-	ONLY_REF_SPLICE	YES	3	0	0.83	1	0.1574	0.0572	MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1,PLEC->chr8:144989321-145050902:-,plectin	MG63_BONE	0.83	1	0.2146	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MT-ND6--MT-TE	10	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1431	0.0286	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MG63_BONE	1	1	0.1717	FALSE	499	1288	110	792	0	FALSE	ACH-000359
MG63_BONE	CTD-2337A12.1--CAST	10	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1431	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	MG63_BONE	1	1	0.1431	TRUE	347	1186	183	220	0	FALSE	ACH-000359
MG63_BONE	RP11-266K4.9--FAM66C	9	3	RP11-266K4.9	1585	chr12:8388595:+	FAM66C	19040	chr12:8368402:+	ONLY_REF_SPLICE	YES	9	0	0.57	1	0.1288	0.0429	GTEx_FI:{Brain=[count:45=pct:6.8],Esophagus=[count:2=pct:0.5],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Colon=[count:2=pct:1.0],Uterus=[count:1=pct:2.3],Pituitary=[count:1=pct:1.9],Testis=[count:1=pct:1.0]},LOCAL_REARRANGEMENT:+:[19264],RP11-266K4.9->chr12:8388011-8395160:+,FAM66C->chr12:8332805-8368747:+,family_with_sequence_similarity_66_member_C	MG63_BONE	0.57	1	0.1717	TRUE	33	15	0	5	0	FALSE	ACH-000359
MG63_BONE	SAMD5--SASH1	9	2	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	11	3	0.5	0.79	0.1288	0.0286	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	MG63_BONE	0.5	0.79	0.1574	TRUE	53	396	64	110	0	FALSE	ACH-000359
MG63_BONE	C15orf57--CBX3	6	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	14	20	0.53	0.44	0.0859	0.1431	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MG63_BONE	0.44	0.53	0.229	TRUE	267	562	48	632	0	FALSE	ACH-000359
MG63_BONE	MROH1--PARP10	7	6	MROH1	18307	chr8:145278133:+	PARP10	51096	chr8:145052249:-	ONLY_REF_SPLICE	YES	3	12	0.81	0.52	0.1002	0.0859	MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1,PARP10->chr8:145051321-145086940:-,poly(ADP-ribose)_polymerase_family_member_10	MG63_BONE	0.52	0.81	0.1861	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	C15orf57--CBX3	6	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	14	20	0.5	0.41	0.0859	0.1145	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MG63_BONE	0.41	0.5	0.2004	TRUE	267	562	48	632	0	FALSE	ACH-000359
MG63_BONE	STX2--GCNT2	6	5	STX2	9724	chr12:131283070:-	GCNT2	21562	chr6:10527707:+	ONLY_REF_SPLICE	YES	50	0	0.18	1	0.0859	0.0716	STX2->chr12:131274145-131323811:-,syntaxin_2,GCNT2->chr6:10492456-10629601:+,glucosaminyl_(N-acetyl)_transferase_2,_I-branching_enzyme_(I_blood_group)	MG63_BONE	0.18	1	0.1575	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	CMBL--SEMA5A	6	3	CMBL	1402	chr5:10307737:-	SEMA5A	17448	chr5:9337924:-	ONLY_REF_SPLICE	YES	157	13	0.05	0.41	0.0859	0.0429	CMBL->carboxymethylenebutenolidase_homolog_(Pseudomonas),chr5:10275987-10308138:-,SEMA5A->chr5:9035138-9546187:-,semaphorin_5A	MG63_BONE	0.05	0.41	0.1288	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MT-ND6--MT-TE	4	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0572	0.1574	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MG63_BONE	1	1	0.2146	FALSE	499	1288	110	792	0	FALSE	ACH-000359
MG63_BONE	MTAP--BNC2	4	11	MTAP	8659	chr9:21838009:+	BNC2	32978	chr9:16437522:-	ONLY_REF_SPLICE	YES	114	10	0.12	0.6	0.0572	0.1574	{Klijn_CCL:Sarcomatoid=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,BNC2->basonuclin_2,chr9:16409501-16870841:-	MG63_BONE	0.12	0.6	0.2146	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	RP11-120D5.1--MID1	5	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	37	0.58	0.16	0.0716	0.0286	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MG63_BONE	0.16	0.58	0.1002	FALSE	16	356	14	466	0	FALSE	ACH-000359
MG63_BONE	COL1A1--NPM1	5	1	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	1409	2	0	0.75	0.0716	0.0143	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	MG63_BONE	0	0.75	0.0859	FALSE	0	0	0	31	0	FALSE	ACH-000359
MG63_BONE	MT-ND6--MT-TE	3	9	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0.1288	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MG63_BONE	1	1	0.1717	FALSE	499	1288	110	792	0	FALSE	ACH-000359
MG63_BONE	RP11-96H19.1--RP11-446N19.1	4	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0572	0.0716	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MG63_BONE	0.9	1	0.1288	FALSE	467	2173	244	435	0	FALSE	ACH-000359
MG63_BONE	EXT1--RP11-94A24.1	4	4	EXT1	2769	chr8:119122324:-	RP11-94A24.1	25655	chr8:123426794:-	ONLY_REF_SPLICE	YES	753	7	0.01	0.53	0.0572	0.0572	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,RP11-94A24.1->chr8:123426571-123440790:-	MG63_BONE	0.01	0.53	0.1144	TRUE	0	0	0	1	0	FALSE	ACH-000359
MG63_BONE	RP11-96H19.1--RP11-446N19.1	3	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0429	0.1002	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MG63_BONE	0.83	1	0.1431	FALSE	407	2205	196	549	0	FALSE	ACH-000359
MG63_BONE	RP4-565E6.1--HYDIN	4	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0572	0.0429	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	MG63_BONE	1	1	0.1001	TRUE	456	1387	91	133	0	FALSE	ACH-000359
MG63_BONE	LYRM4--PSIP1	4	2	LYRM4	4789	chr6:5216851:-	PSIP1	25347	chr9:15506635:-	ONLY_REF_SPLICE	YES	82	300	0.07	0.02	0.0572	0.0286	{Klijn_CCL:Sarcomatoid=1},LYRM4->LYR_motif_containing_4,chr6:5102827-5261172:-,PSIP1->Oncogene{Bushman},PC4_and_SFRS1_interacting_protein_1,chr9:15464064-15511017:-	MG63_BONE	0.02	0.07	0.0858	TRUE	0	0	0	1	0	FALSE	ACH-000359
MG63_BONE	FBXW11--RUFY1	4	1	FBXW11	1416	chr5:171433462:-	RUFY1	29525	chr5:178987026:+	ONLY_REF_SPLICE	YES	60	7	0.08	0.42	0.0572	0.0143	FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,RUFY1->RUN_and_FYVE_domain_containing_1,chr5:178977559-179037027:+	MG63_BONE	0.08	0.42	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	SMAP1--RECK	4	1	SMAP1	1366	chr6:71377844:+	RECK	37791	chr9:36102091:+	ONLY_REF_SPLICE	YES	12	127	0.29	0.04	0.0572	0.0143	SMAP1->Oncogene{Bushman},chr6:71377479-71571718:+,small_ArfGAP_1,RECK->chr9:36036430-36124448:+,reversion_inducing_cysteine_rich_protein_with_kazal_motifs	MG63_BONE	0.04	0.29	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	CTGF--RPS28	4	0	CTGF	1152	chr6:132272362:-	RPS28	7541	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0572	0	GTEx&tcga_normals:1/3694=0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MG63_BONE	1	1	0.0572	TRUE	0	0	0	5	0	TRUE	ACH-000359
MG63_BONE	JARID2--RP11-30J20.1	4	0	JARID2	6950	chr6:15452406:+	RP11-30J20.1	42732	chr8:137997081:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0572	0	JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,RP11-30J20.1->chr8:137543041-137997178:+	MG63_BONE	1	1	0.0572	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0572	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MG63_BONE	1	1	0.0572	FALSE	462	80	0	856	0	FALSE	ACH-000359
MG63_BONE	STX2--GCNT2	4	0	STX2	9724	chr12:131283070:-	GCNT2	31288	chr6:10621584:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0572	0	STX2->chr12:131274145-131323811:-,syntaxin_2,GCNT2->chr6:10492456-10629601:+,glucosaminyl_(N-acetyl)_transferase_2,_I-branching_enzyme_(I_blood_group)	MG63_BONE	1	1	0.0572	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	WTAPP1--RUVBL1	4	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0572	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	MG63_BONE	1	1	0.0572	TRUE	9	252	6	66	0	FALSE	ACH-000359
MG63_BONE	MTAP--BNC2	3	3	MTAP	9899	chr9:21854869:+	BNC2	46906	chr9:16413025:-	INCL_NON_REF_SPLICE	YES	0	95	1	0.06	0.0429	0.0429	{Klijn_CCL:Sarcomatoid=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,BNC2->basonuclin_2,chr9:16409501-16870841:-	MG63_BONE	0.06	1	0.0858	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	SCUBE3--RP11-489O18.1	3	2	SCUBE3	15527	chr6:35214062:+	RP11-489O18.1	25308	chr8:139085144:+	ONLY_REF_SPLICE	YES	118	0	0.04	1	0.0429	0.0286	SCUBE3->chr6:35182190-35220856:+,signal_peptide,_CUB_domain_and_EGF_like_domain_containing_3,RP11-489O18.1->chr8:139075511-139085483:+	MG63_BONE	0.04	1	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	SMAP1--RECK	3	2	SMAP1	1366	chr6:71377844:+	RECK	36578	chr9:36100328:+	ONLY_REF_SPLICE	NO	12	137	0.29	0.04	0.0429	0.0286	SMAP1->Oncogene{Bushman},chr6:71377479-71571718:+,small_ArfGAP_1,RECK->chr9:36036430-36124448:+,reversion_inducing_cysteine_rich_protein_with_kazal_motifs	MG63_BONE	0.04	0.29	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	ST3GAL1--RP11-946L20.2	3	1	ST3GAL1	5010	chr8:134558017:-	RP11-946L20.2	30661	chr8:112015679:-	ONLY_REF_SPLICE	YES	123	0	0.03	1	0.0429	0.0143	ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,RP11-946L20.2->chr8:111949919-112039662:-	MG63_BONE	0.03	1	0.0572	TRUE	0	0	0	1	0	FALSE	ACH-000359
MG63_BONE	CTC-340A15.2--CTC-535M15.2	3	0	CTC-340A15.2	1501	chr5:163724202:+	CTC-535M15.2	32673	chr5:165204982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0429	0	CTC-340A15.2->chr5:163723702-164598649:+,CTC-535M15.2->chr5:164776036-165205694:+	MG63_BONE	1	1	0.0429	TRUE	0	0	0	3	0	TRUE	ACH-000359
MG63_BONE	POLE--ANKLE2	3	0	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0429	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	MG63_BONE	1	1	0.0429	TRUE	0	0	0	11	0	TRUE	ACH-000359
MG63_BONE	ST3GAL1--RP11-946L20.2	1	7	ST3GAL1	1248	chr8:134583936:-	RP11-946L20.2	28672	chr8:112017878:-	ONLY_REF_SPLICE	YES	187	0	0.04	1	0.0143	0.1002	ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,RP11-946L20.2->chr8:111949919-112039662:-	MG63_BONE	0.04	1	0.1145	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	CNTLN--PCAT1	2	1	CNTLN	20028	chr9:17342442:+	PCAT1	44298	chr8:128018800:+	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0286	0.0143	CNTLN->centlein,chr9:17134980-17503921:+,PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding)	MG63_BONE	0.3	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MTAP--BNC2	1	5	MTAP	9899	chr9:21854869:+	BNC2	39250	chr9:16421293:-	ONLY_REF_SPLICE	YES	0	275	1	0.02	0.0143	0.0716	{Klijn_CCL:Sarcomatoid=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,BNC2->basonuclin_2,chr9:16409501-16870841:-	MG63_BONE	0.02	1	0.0859	TRUE	0	0	0	1	0	FALSE	ACH-000359
MG63_BONE	ZDHHC21--RP11-125M16.1	2	1	ZDHHC21	11354	chr9:14639894:-	RP11-125M16.1	25268	chr6:12583739:-	ONLY_REF_SPLICE	YES	283	0	0.01	1	0.0286	0.0143	ZDHHC21->chr9:14611069-14693469:-,zinc_finger_DHHC-type_containing_21,RP11-125M16.1->chr6:12583147-12585636:-	MG63_BONE	0.01	1	0.0429	FALSE	0	0	0	1	0	FALSE	ACH-000359
MG63_BONE	ARMC6--CTC-429P9.4	2	0	ARMC6	1356	chr19:19144739:+	CTC-429P9.4	20734	chr19:16758072:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+,CTC-429P9.4->chr19:16688453-16770926:-	MG63_BONE	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	ATP8A1--UNC13B	1	4	ATP8A1	17063	chr4:42576636:-	UNC13B	63174	chr9:35370315:+	ONLY_REF_SPLICE	NO	0	14	1	0.26	0.0143	0.0572	ATP8A1->ATPase_phospholipid_transporting_8A1,chr4:42410390-42659122:-,UNC13B->chr9:35161999-35405335:+,unc-13_homolog_B_(C._elegans)	MG63_BONE	0.26	1	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	ATP8A1--UNC13B	1	4	ATP8A1	17063	chr4:42576636:-	UNC13B	62127	chr9:35366944:+	ONLY_REF_SPLICE	NO	0	16	1	0.24	0.0143	0.0572	ATP8A1->ATPase_phospholipid_transporting_8A1,chr4:42410390-42659122:-,UNC13B->chr9:35161999-35405335:+,unc-13_homolog_B_(C._elegans)	MG63_BONE	0.24	1	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	KAT8--RP11-196G11.1	2	0	KAT8	8035	chr16:31139460:+	RP11-196G11.1	15923	chr16:31102663:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	LOCAL_INVERSION:+:-:[20798],KAT8->chr16:31127075-31142714:+,lysine_acetyltransferase_8,RP11-196G11.1->chr16:31094760-31106277:-	MG63_BONE	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MROH1--PARP10	1	4	MROH1	18307	chr8:145278133:+	PARP10	51347	chr8:145051998:-	ONLY_REF_SPLICE	YES	3	28	0.62	0.15	0.0143	0.0572	MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1,PARP10->chr8:145051321-145086940:-,poly(ADP-ribose)_polymerase_family_member_10	MG63_BONE	0.15	0.62	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MTAP--BNC2	1	4	MTAP	7556	chr9:21818201:+	BNC2	32978	chr9:16437522:-	ONLY_REF_SPLICE	YES	127	10	0.04	0.33	0.0143	0.0572	{Klijn_CCL:Sarcomatoid=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,BNC2->basonuclin_2,chr9:16409501-16870841:-	MG63_BONE	0.04	0.33	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MTAP--MIR31HG	2	0	MTAP	8659	chr9:21838009:+	MIR31HG	25739	chr9:21455943:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,MIR31HG->MIR31_host_gene,chr9:21455641-21559668:-	MG63_BONE	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	SCFD2--FIP1L1	2	0	SCFD2	4269	chr4:54179803:-	FIP1L1	22651	chr4:54265897:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	GTEx_FI:{Pancreas=[count:1=pct:0.6],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=6;pct=0.07%;dist=Ovary=1,Prostate=1,Liver=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[11568],SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	MG63_BONE	1	1	0.0286	TRUE	0	0	0	2	0	TRUE	ACH-000359
MG63_BONE	CMBL--SEMA5A	1	3	CMBL	1512	chr5:10307627:-	SEMA5A	17448	chr5:9337924:-	ONLY_REF_SPLICE	NO	166	13	0.02	0.24	0.0143	0.0429	CMBL->carboxymethylenebutenolidase_homolog_(Pseudomonas),chr5:10275987-10308138:-,SEMA5A->chr5:9035138-9546187:-,semaphorin_5A	MG63_BONE	0.02	0.24	0.0572	TRUE	0	0	0	1	0	FALSE	ACH-000359
MG63_BONE	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	5	10	0.38	0.23	0.0143	0.0286	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MG63_BONE	0.23	0.38	0.0429	FALSE	0	23	1	67	0	FALSE	ACH-000359
MG63_BONE	SCFD2--FIP1L1	1	2	SCFD2	6695	chr4:54011500:-	FIP1L1	32432	chr4:54324820:+	ONLY_REF_SPLICE	YES	208	594	0.01	0.01	0.0143	0.0286	GTEx_FI:{Pancreas=[count:1=pct:0.6],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=6;pct=0.07%;dist=Ovary=1,Prostate=1,Liver=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[11568],SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	MG63_BONE	0.01	0.01	0.0429	FALSE	0	0	0	1	0	FALSE	ACH-000359
MG63_BONE	TM9SF2--CLYBL	1	2	TM9SF2	18522	chr13:100207901:+	CLYBL	26104	chr13:100425078:+	ONLY_REF_SPLICE	YES	197	0	0.01	1	0.0143	0.0286	NEIGHBORS[42659],TM9SF2->chr13:100153671-100216260:+,transmembrane_9_superfamily_member_2,CLYBL->chr13:100258919-100549387:+,citrate_lyase_beta_like	MG63_BONE	0.01	1	0.0429	FALSE	0	0	0	2	0	FALSE	ACH-000359
MG63_BONE	C14orf37--PSMA3	1	1	C14orf37	2258	chr14:58758353:-	PSMA3	29605	chr14:58734192:+	ONLY_REF_SPLICE	YES	0	197	1	0.01	0.0143	0.0143	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	MG63_BONE	0.01	1	0.0286	FALSE	0	1	0	2	0	FALSE	ACH-000359
MG63_BONE	CLIP4--EPHB4	1	1	CLIP4	15063	chr2:29375694:+	EPHB4	38011	chr7:100416266:-	ONLY_REF_SPLICE	YES	22	61	0.08	0.03	0.0143	0.0143	{Klijn_CCL:Sarcomatoid=1},CLIP4->CAP-Gly_domain_containing_linker_protein_family_member_4,chr2:29320571-29412509:+,EPHB4->EPH_receptor_B4,chr7:100400187-100425121:-	MG63_BONE	0.03	0.08	0.0286	TRUE	0	0	0	1	0	FALSE	ACH-000359
MG63_BONE	FBN1--GNAS	1	1	FBN1	10235	chr15:48888480:-	GNAS	90324	chr20:57470667:+	ONLY_REF_SPLICE	NO	190	573	0.01	0	0.0143	0.0143	FBN1->chr15:48700503-48938046:-,fibrillin_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	MG63_BONE	0	0.01	0.0286	FALSE	0	0	0	1	0	FALSE	ACH-000359
MG63_BONE	LINC00578--TBL1XR1	1	1	LINC00578	1190	chr3:177159898:+	TBL1XR1	14574	chr3:176816329:-	ONLY_REF_SPLICE	YES	7	21	0.22	0.09	0.0143	0.0143	LINC00578->chr3:177159709-177470093:+,long_intergenic_non-protein_coding_RNA_578,TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1	MG63_BONE	0.09	0.22	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000359
MG63_BONE	MYO10--BASP1	1	1	MYO10	1476	chr5:16935897:-	BASP1	57021	chr5:17275317:+	ONLY_REF_SPLICE	YES	292	814	0.01	0	0.0143	0.0143	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},MYO10->chr5:16665395-16936372:-,myosin_X,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	MG63_BONE	0	0.01	0.0286	FALSE	0	0	0	3	0	FALSE	ACH-000359
MG63_BONE	PDHX--CD44	1	1	PDHX	8791	chr11:34991833:+	CD44	37425	chr11:35236399:+	ONLY_REF_SPLICE	YES	114	2032	0.02	0	0.0143	0.0143	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	MG63_BONE	0	0.02	0.0286	FALSE	0	0	0	1	0	FALSE	ACH-000359
MG63_BONE	SCFD2--FIP1L1	1	1	SCFD2	5445	chr4:54139993:-	FIP1L1	31107	chr4:54319087:+	ONLY_REF_SPLICE	YES	296	695	0.01	0	0.0143	0.0143	GTEx_FI:{Pancreas=[count:1=pct:0.6],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=6;pct=0.07%;dist=Ovary=1,Prostate=1,Liver=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[11568],SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	MG63_BONE	0	0.01	0.0286	FALSE	0	1	0	1	1	FALSE	ACH-000359
MG63_BONE	TPM2--ACTG1	1	1	TPM2	4592	chr9:35685061:-	ACTG1	14213	chr17:79478652:-	ONLY_REF_SPLICE	NO	3039	6905	0	0	0.0143	0.0143	GTEx&tcga_normals:114/3694=3.09%,GTEx:2.09%,GTEx_FI:{Blood_Vessel=[count:158=pct:42.8],Esophagus=[count:132=pct:32.6],Colon=[count:59=pct:30.9],Heart=[count:15=pct:6.0],Prostate=[count:9=pct:14.8],Stomach=[count:8=pct:9.0],Adipose_Tissue=[count:6=pct:2.0],Uterus=[count:4=pct:9.3],Small_Intestine=[count:3=pct:5.5],Vagina=[count:3=pct:5.5],Bladder=[count:2=pct:22.2],Lung=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Breast=[count:1=pct:0.9],_not_provided_=[count:1=pct:100.0],Fallopian_Tube=[count:1=pct:16.7],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=484;pct=5.59%;dist=Artery_-_Tibial=130,Esophagus_-_Muscularis=91,Esophagus_-_Gastroesophageal_Junction=56,Colon_-_Sigmoid=48,Artery_-_Coronary=29,Artery_-_Aorta=28,Colon_-_Transverse=23,Stomach=15,Adipose_-_Subcutaneous=13,Prostate=10,Uterus=8,Esophagus_-_Mucosa=6,Small_Intestine_-_Terminal_Ileum=5,Heart_-_Left_Ventricle=5,Heart_-_Atrial_Appendage=5,Breast_-_Mammary_Tissue=2,Vagina=2,Bladder=2,Ovary=1,Lung=1,Adipose_-_Visceral_(Omentum)=1,Muscle_-_Skeletal=1,Cells_-_Transformed_fibroblasts=1,Fallopian_Tube=1},TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),ACTG1->actin_gamma_1,chr17:79476997-79490873:-	MG63_BONE	0	0	0.0286	FALSE	237	57	25	9	0	FALSE	ACH-000359
NCIH2073_LUNG	PTK2--WI2-1896O14.1	542	134	PTK2	15654	chr8:141874411:-	WI2-1896O14.1	65308	chr1:144679969:-	ONLY_REF_SPLICE	YES	156	0	0.81	1	5.2379	1.295	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,WI2-1896O14.1->chr1:144676874-144679969:-	NCIH2073_LUNG	0.81	1	6.5329	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	WI2-1896O14.1--RP11-353N4.1	275	60	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	3	1	0.99	2.6576	0.5798	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	NCIH2073_LUNG	0.99	1	3.2374	TRUE	361	258	24	38	0	FALSE	ACH-000590
NCIH2073_LUNG	ASPH--SPIDR	248	56	ASPH	1328	chr8:62626828:-	SPIDR	71288	chr8:48586363:+	ONLY_REF_SPLICE	YES	511	53	0.37	0.85	2.3967	0.5412	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair	NCIH2073_LUNG	0.37	0.85	2.9379	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PAXIP1--DPP6	201	76	PAXIP1	5140	chr7:154790360:-	DPP6	37842	chr7:154143299:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.9425	0.7345	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[49402],PAXIP1->PAX_interacting_protein_1,chr7:154735397-154794794:-,DPP6->chr7:153584182-154685995:+,dipeptidyl_peptidase_like_6	NCIH2073_LUNG	1	1	2.677	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TN	195	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.8845	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2073_LUNG	1	1	1.8845	FALSE	369	2501	205	193	0	FALSE	ACH-000590
NCIH2073_LUNG	SNX8--MAD1L1	138	13	SNX8	3400	chr7:2353963:-	MAD1L1	61693	chr7:1855864:-	ONLY_REF_SPLICE	YES	7	26	0.96	0.85	1.3336	0.1256	NEIGHBORS[18527],SNX8->chr7:2291405-2393953:-,sorting_nexin_8,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	NCIH2073_LUNG	0.85	0.96	1.4592	FALSE	0	0	0	6	0	FALSE	ACH-000590
NCIH2073_LUNG	TIMM23B--LINC00843	100	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9664	0.2029	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2073_LUNG	1	1	1.1693	TRUE	508	994	45	981	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	100	10	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.9664	0.0966	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	0.98	1	1.063	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TC	91	11	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8794	0.1063	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2073_LUNG	1	1	0.9857	FALSE	462	80	0	856	0	FALSE	ACH-000590
NCIH2073_LUNG	AP3D1--R3HCC1L	77	39	AP3D1	5142	chr19:2137010:-	R3HCC1L	38982	chr10:99991269:+	ONLY_REF_SPLICE	YES	92	5	0.56	0.96	0.7441	0.3769	AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+	NCIH2073_LUNG	0.56	0.96	1.121	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	WI2-1896O14.1--RP11-353N4.1	65	73	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	5570	chr1:149591759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6282	0.7055	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	NCIH2073_LUNG	1	1	1.3337	TRUE	361	258	24	38	0	FALSE	ACH-000590
NCIH2073_LUNG	UBQLN1--SHC3	75	26	UBQLN1	3972	chr9:86297866:-	SHC3	33129	chr9:91628490:-	ONLY_REF_SPLICE	YES	266	1	0.28	0.99	0.7248	0.2513	{Klijn_CCL:Lung=1},UBQLN1->chr9:86274878-86323118:-,ubiquilin_1,SHC3->SHC_(Src_homology_2_domain_containing)_transforming_protein_3,chr9:91628060-91793682:-	NCIH2073_LUNG	0.28	0.99	0.9761	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	TIMM23--RP11-464F9.1	60	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	117	2	0.34	0.97	0.5798	0.0097	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2073_LUNG	0.34	0.97	0.5895	TRUE	519	3926	326	965	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	57	11	MTND4P12	1966	chr5:134262761:-	MT-ATP8	5439	chrM:8427:+	INCL_NON_REF_SPLICE	YES	81	0	0.46	1	0.5508	0.1063	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.46	1	0.6571	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TN	20	124	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1933	1.1983	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2073_LUNG	1	1	1.3916	FALSE	369	2501	205	193	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	51	0	MTND4P12	1216	chr5:134263511:-	MT-ATP8	5480	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4929	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	1	1	0.4929	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	43	11	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.4156	0.1063	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	0.96	1	0.5219	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	32	33	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	7	0	0.9	1	0.3092	0.3189	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	0.9	1	0.6281	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	FGD4--RP1-27K12.4	39	3	FGD4	1431	chr12:32552893:+	RP1-27K12.4	38977	chr6:53370952:+	ONLY_REF_SPLICE	YES	4	0	0.91	1	0.3769	0.029	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,RP1-27K12.4->chr6:53367983-53371717:+	NCIH2073_LUNG	0.91	1	0.4059	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TC	36	11	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3479	0.1063	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2073_LUNG	1	1	0.4542	FALSE	462	80	0	856	0	FALSE	ACH-000590
NCIH2073_LUNG	KIRREL--MPTX1	36	5	KIRREL	1456	chr1:157963518:+	MPTX1	21261	chr1:159246297:+	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.3479	0.0483	KIRREL->chr1:157963063-158070052:+,kin_of_IRRE_like_(Drosophila),MPTX1->chr1:159246293-159247282:+,mucosal_pentraxin_1_(pseudogene)	NCIH2073_LUNG	0.93	1	0.3962	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TN	26	39	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2513	0.3769	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2073_LUNG	1	1	0.6282	FALSE	369	2501	205	193	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	33	11	MTND4P12	1994	chr5:134262733:-	MT-ATP8	5469	chrM:8457:+	INCL_NON_REF_SPLICE	YES	118	0	0.27	1	0.3189	0.1063	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.27	1	0.4252	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	CAND1--C12orf56	32	5	CAND1	13431	chr12:67700377:+	C12orf56	32493	chr12:64712760:-	ONLY_REF_SPLICE	YES	186	3	0.17	0.93	0.3092	0.0483	CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1,C12orf56->chr12:64660217-64784972:-,chromosome_12_open_reading_frame_56	NCIH2073_LUNG	0.17	0.93	0.3575	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TN	3	119	MT-TA	1055	chrM:5601:-	MT-TN	3986	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.029	1.15	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2073_LUNG	1	1	1.179	FALSE	369	2501	205	193	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TN	18	57	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.174	0.5508	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2073_LUNG	1	1	0.7248	FALSE	369	2501	205	193	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TN	11	81	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1063	0.7828	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2073_LUNG	1	1	0.8891	FALSE	369	2501	205	193	0	FALSE	ACH-000590
NCIH2073_LUNG	ZNF654--HMGB2	27	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2609	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2073_LUNG	1	1	0.2609	TRUE	0	0	0	518	0	FALSE	ACH-000590
NCIH2073_LUNG	RP11-123O10.4--GRIP1	26	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2513	0.0193	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2073_LUNG	1	1	0.2706	FALSE	416	2512	207	587	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND3--MT-ATP8	26	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2513	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	1	1	0.2513	FALSE	351	233	23	137	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TN	26	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2513	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2073_LUNG	1	1	0.2513	FALSE	369	2501	205	193	0	FALSE	ACH-000590
NCIH2073_LUNG	PDE4D--RP11-479O16.1	23	9	PDE4D	26151	chr5:58571164:-	RP11-479O16.1	58465	chr5:58112961:-	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.2223	0.087	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-479O16.1->chr5:58037408-58112926:-	NCIH2073_LUNG	0.89	1	0.3093	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	LRRC1--CA10	23	8	LRRC1	1919	chr6:53660213:+	CA10	32543	chr17:49731097:-	ONLY_REF_SPLICE	YES	7	0	0.82	1	0.2223	0.0773	{Klijn_CCL:Lung=1},LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1,CA10->carbonic_anhydrase_10,chr17:49707674-50237377:-	NCIH2073_LUNG	0.82	1	0.2996	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	23	3	MTND4P12	1754	chr5:134262973:-	MT-ATP8	5448	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18	0	0.59	1	0.2223	0.029	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.59	1	0.2513	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MPP6--PHF14	23	1	MPP6	1326	chr7:24613212:+	PHF14	44141	chr7:11101418:+	ONLY_REF_SPLICE	YES	0	53	1	0.31	0.2223	0.0097	MPP6->chr7:24612887-24733812:+,membrane_palmitoylated_protein_6,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH2073_LUNG	0.31	1	0.232	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	20	12	MTND4P12	1974	chr5:134262753:-	MT-ATP8	5447	chrM:8435:+	INCL_NON_REF_SPLICE	YES	95	0	0.25	1	0.1933	0.116	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.25	1	0.3093	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TN	11	45	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1063	0.4349	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2073_LUNG	1	1	0.5412	FALSE	369	2501	205	193	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	20	9	MTND4P12	1943	chr5:134262784:-	MT-ATP8	5409	chrM:8397:+	INCL_NON_REF_SPLICE	YES	93	0	0.24	1	0.1933	0.087	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.24	1	0.2803	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	18	13	MTND4P12	1989	chr5:134262738:-	MT-ATP8	5464	chrM:8452:+	INCL_NON_REF_SPLICE	YES	112	0	0.22	1	0.174	0.1256	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.22	1	0.2996	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	RP11-96H19.1--RP11-446N19.1	19	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.1836	0.0676	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2073_LUNG	0.96	1	0.2512	FALSE	407	2205	196	549	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TN	7	51	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0676	0.4929	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2073_LUNG	1	1	0.5605	FALSE	369	2501	205	193	0	FALSE	ACH-000590
NCIH2073_LUNG	TSPAN31--RPS11P6	17	10	TSPAN31	1189	chr12:58131984:+	RPS11P6	16220	chr12:64782813:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1643	0.0966	TSPAN31->chr12:58131796-58143994:+,tetraspanin_31,RPS11P6->chr12:64616117-64790845:+,ribosomal_protein_S11_pseudogene_6	NCIH2073_LUNG	1	1	0.2609	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	KMT2C--AC008060.7	18	2	KMT2C	1380	chr7:152132711:-	AC008060.7	76083	chr7:155187741:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.174	0.0193	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,AC008060.7->chr7:155174771-155189051:+	NCIH2073_LUNG	1	1	0.1933	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	6	50	MT-ND6	1196	chrM:14478:-	MT-TE	4557	chrM:14711:-	INCL_NON_REF_SPLICE	YES	7	0	0.89	1	0.058	0.4832	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	0.89	1	0.5412	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	5	54	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	9	0	0.87	1	0.0483	0.5219	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	0.87	1	0.5702	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	CTDSP2--RP11-542B15.1	18	0	CTDSP2	1368	chr12:58240155:-	RP11-542B15.1	18126	chr12:67959294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.174	0	CTDSP2->CTD_small_phosphatase_2,chr12:58213710-58240522:-,RP11-542B15.1->chr12:67913609-67960906:+	NCIH2073_LUNG	1	1	0.174	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PCMTD1--RP1-214M20.2	17	4	PCMTD1	7395	chr8:52758221:-	RP1-214M20.2	24433	chr6:52810263:-	ONLY_REF_SPLICE	YES	21	0	0.5	1	0.1643	0.0387	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,RP1-214M20.2->chr6:52804524-52822319:-	NCIH2073_LUNG	0.5	1	0.203	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	SLC1A5--MT-ND4L	18	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.174	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2073_LUNG	1	1	0.174	FALSE	0	0	0	189	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	8	38	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.0773	0.3672	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	0.96	1	0.4445	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TC	17	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1643	0.0193	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2073_LUNG	1	1	0.1836	FALSE	462	80	0	856	0	FALSE	ACH-000590
NCIH2073_LUNG	KANSL1--ARL17B	16	4	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	14	9	0.59	0.69	0.1546	0.0387	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH2073_LUNG	0.59	0.69	0.1933	TRUE	181	1564	124	196	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	3	54	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	7	0	0.89	1	0.029	0.5219	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	0.89	1	0.5509	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	3	54	MT-ND6	1153	chrM:14521:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.029	0.5219	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	0.97	1	0.5509	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	4	50	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	7	0	0.89	1	0.0387	0.4832	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	0.89	1	0.5219	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	10	24	MTND4P12	2210	chr5:134262517:-	MT-ATP8	5419	chrM:8407:+	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0966	0.2319	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.94	1	0.3285	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	14	5	MTND4P12	1794	chr5:134262933:-	MT-ATP8	5440	chrM:8428:+	INCL_NON_REF_SPLICE	YES	25	0	0.43	1	0.1353	0.0483	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.43	1	0.1836	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TN	15	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.145	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2073_LUNG	1	1	0.145	FALSE	369	2501	205	193	0	FALSE	ACH-000590
NCIH2073_LUNG	PRIM1--RP11-110A12.2	13	6	PRIM1	9806	chr12:57132218:-	RP11-110A12.2	19328	chr12:55828915:-	ONLY_REF_SPLICE	YES	28	0	0.4	1	0.1256	0.058	PRIM1->chr12:57125380-57146157:-,primase_(DNA)_subunit_1,RP11-110A12.2->chr12:55828521-55979255:-	NCIH2073_LUNG	0.4	1	0.1836	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	RP11-123O10.4--RP11-314D7.1	13	3	RP11-123O10.4	1113	chr12:67462830:-	RP11-314D7.1	5197	chr12:73537634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1256	0.029	RP11-123O10.4->chr12:67285656-67462942:-,RP11-314D7.1->chr12:73509737-73537638:-	NCIH2073_LUNG	1	1	0.1546	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	11	10	MTND4P12	2003	chr5:134262724:-	MT-ATP8	5478	chrM:8466:+	INCL_NON_REF_SPLICE	YES	140	8	0.13	0.72	0.1063	0.0966	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.13	0.72	0.2029	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	LINC00511--RP11-264B14.1	13	1	LINC00511	8867	chr17:70588342:-	RP11-264B14.1	34056	chr17:59112135:-	ONLY_REF_SPLICE	YES	8	1	0.64	0.93	0.1256	0.0097	LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,RP11-264B14.1->chr17:59111997-59147483:-	NCIH2073_LUNG	0.64	0.93	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	6	29	MTND4P12	2240	chr5:134262487:-	MT-ATP8	5446	chrM:8434:+	INCL_NON_REF_SPLICE	YES	13	0	0.73	1	0.058	0.2803	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.73	1	0.3383	FALSE	19	16	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	5	31	MTND4P12	2282	chr5:134262445:-	MT-ATP8	5440	chrM:8428:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0483	0.2996	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.95	1	0.3479	FALSE	18	16	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	12	2	MTND4P12	1767	chr5:134262960:-	MT-ATP8	5500	chrM:8488:+	INCL_NON_REF_SPLICE	YES	20	1119	0.41	0.01	0.116	0.0193	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.01	0.41	0.1353	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	3	37	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.029	0.3576	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	0.98	1	0.3866	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	SDF4--MT-ND4L	11	4	SDF4	2252	chr1:1164215:-	MT-ND4L	13838	chrM:10471:+	INCL_NON_REF_SPLICE	YES	563	0	0.03	1	0.1063	0.0387	SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2073_LUNG	0.03	1	0.145	FALSE	0	0	0	7	0	FALSE	ACH-000590
NCIH2073_LUNG	PTK2--WI2-1896O14.1	10	7	PTK2	12741	chr8:141900764:-	WI2-1896O14.1	65308	chr1:144679969:-	INCL_NON_REF_SPLICE	YES	236	0	0.07	1	0.0966	0.0676	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,WI2-1896O14.1->chr1:144676874-144679969:-	NCIH2073_LUNG	0.07	1	0.1642	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	3	33	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	7	0	0.84	1	0.029	0.3189	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	0.84	1	0.3479	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	7	16	MTND4P12	2182	chr5:134262545:-	MT-ATP8	5488	chrM:8476:+	INCL_NON_REF_SPLICE	YES	3	287	0.88	0.07	0.0676	0.1546	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.07	0.88	0.2222	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	R3HCC1L--PLEKHJ1	10	4	R3HCC1L	7543	chr10:99969656:+	PLEKHJ1	22844	chr19:2230611:-	ONLY_REF_SPLICE	YES	4	3	0.78	0.82	0.0966	0.0387	R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+,PLEKHJ1->chr19:2230002-2237703:-,pleckstrin_homology_domain_containing_J1	NCIH2073_LUNG	0.78	0.82	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	4	27	MTND4P12	2228	chr5:134262499:-	MT-ATP8	5436	chrM:8424:+	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.0387	0.2609	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.89	1	0.2996	FALSE	19	16	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	5	23	MTND4P12	2320	chr5:134262407:-	MT-ATP8	5480	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	12	1	0.7	0.0483	0.2223	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.7	1	0.2706	FALSE	18	16	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	5	22	MTND4P12	2157	chr5:134262570:-	MT-ATP8	5426	chrM:8414:+	INCL_NON_REF_SPLICE	YES	4	0	0.87	1	0.0483	0.2126	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.87	1	0.2609	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	8	9	MTND4P12	1948	chr5:134262779:-	MT-ATP8	5444	chrM:8432:+	INCL_NON_REF_SPLICE	YES	101	0	0.14	1	0.0773	0.087	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.14	1	0.1643	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	10	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0966	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	1	1	0.0966	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	8	8	MTND4P12	2007	chr5:134262720:-	MT-ATP8	5486	chrM:8474:+	INCL_NON_REF_SPLICE	YES	171	193	0.09	0.08	0.0773	0.0773	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.08	0.09	0.1546	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	5	20	MTND4P12	2217	chr5:134262510:-	MT-ATP8	5484	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2	119	0.93	0.17	0.0483	0.1933	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.17	0.93	0.2416	FALSE	19	16	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	LINC00265--HDAC9	9	3	LINC00265	1413	chr7:39773643:+	HDAC9	49626	chr7:18788628:+	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.087	0.029	LINC00265->chr7:39773231-39832691:+,long_intergenic_non-protein_coding_RNA_265,HDAC9->chr7:18126572-19042039:+,histone_deacetylase_9	NCIH2073_LUNG	0.92	1	0.116	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	AP3D1--R3HCC1L	8	6	AP3D1	3534	chr19:2138618:-	R3HCC1L	38982	chr10:99991269:+	ONLY_REF_SPLICE	YES	59	5	0.19	0.74	0.0773	0.058	AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+	NCIH2073_LUNG	0.19	0.74	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	AP3D1--R3HCC1L	5	18	AP3D1	4426	chr19:2137726:-	R3HCC1L	38982	chr10:99991269:+	ONLY_REF_SPLICE	YES	151	5	0.13	0.82	0.0483	0.174	AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+	NCIH2073_LUNG	0.13	0.82	0.2223	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MT-ND3--MT-ATP8	9	2	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	106	13	0.09	0.46	0.087	0.0193	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.09	0.46	0.1063	FALSE	351	233	23	137	0	FALSE	ACH-000590
NCIH2073_LUNG	AES--MTATP6P1	9	1	AES	2887	chr19:3061219:-	MTATP6P1	12247	chr1:569327:+	INCL_NON_REF_SPLICE	YES	132	4212	0.07	0	0.087	0.0097	AES->amino-terminal_enhancer_of_split,chr19:3052908-3063105:-,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH2073_LUNG	0	0.07	0.0967	FALSE	0	0	0	3	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	5	17	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0483	0.1643	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	0.92	1	0.2126	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	4	21	MTND4P12	2250	chr5:134262477:-	MT-ATP8	5484	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15	119	0.62	0.17	0.0387	0.2029	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.17	0.62	0.2416	FALSE	19	16	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	TLE1--LYRM5	9	1	TLE1	4193	chr9:84300591:-	LYRM5	28017	chr12:25356854:+	ONLY_REF_SPLICE	YES	15	7	0.4	0.59	0.087	0.0097	TLE1->chr9:84198598-84304220:-,transducin_like_enhancer_of_split_1,LYRM5->LYR_motif_containing_5,chr12:25348150-25362579:+	NCIH2073_LUNG	0.4	0.59	0.0967	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	XRCC6BP1--RP11-629N8.3	9	1	XRCC6BP1	6790	chr12:58347472:+	RP11-629N8.3	13715	chr12:65172851:+	ONLY_REF_SPLICE	YES	24	0	0.29	1	0.087	0.0097	XRCC6BP1->chr12:58335324-58351052:+,RP11-629N8.3->chr12:65153301-65173098:+	NCIH2073_LUNG	0.29	1	0.0967	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	9	0	MTND4P12	1212	chr5:134263515:-	MT-ATP8	5425	chrM:8413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.087	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	1	1	0.087	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	3	24	MTND4P12	2214	chr5:134262513:-	MT-ATP8	5423	chrM:8411:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.029	0.2319	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.96	1	0.2609	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	NRIP1--AF127936.7	9	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.087	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2073_LUNG	1	1	0.087	FALSE	292	1546	117	613	0	FALSE	ACH-000590
NCIH2073_LUNG	UBQLN1--SHC3	9	0	UBQLN1	1704	chr9:86322415:-	SHC3	33129	chr9:91628490:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.087	0	{Klijn_CCL:Lung=1},UBQLN1->chr9:86274878-86323118:-,ubiquilin_1,SHC3->SHC_(Src_homology_2_domain_containing)_transforming_protein_3,chr9:91628060-91793682:-	NCIH2073_LUNG	1	1	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	3	22	MTND4P12	2153	chr5:134262574:-	MT-ATP8	5422	chrM:8410:+	INCL_NON_REF_SPLICE	YES	5	0	0.83	1	0.029	0.2126	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.83	1	0.2416	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	3	22	MTND4P12	2183	chr5:134262544:-	MT-ATP8	5445	chrM:8433:+	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.029	0.2126	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.89	1	0.2416	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	4	18	MTND4P12	2179	chr5:134262548:-	MT-ATP8	5480	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2	12	0.92	0.65	0.0387	0.174	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.65	0.92	0.2127	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	LINC00511--RP11-264B14.1	8	1	LINC00511	8867	chr17:70588342:-	RP11-264B14.1	32884	chr17:59113745:-	ONLY_REF_SPLICE	YES	8	0	0.53	1	0.0773	0.0097	LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,RP11-264B14.1->chr17:59111997-59147483:-	NCIH2073_LUNG	0.53	1	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	8	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0773	0.0097	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	1	1	0.087	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	3	21	MTND4P12	2172	chr5:134262555:-	MT-ATP8	5433	chrM:8421:+	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.029	0.2029	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.92	1	0.2319	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	PDE4D--RP11-479O16.1	8	1	PDE4D	19661	chr5:59064073:-	RP11-479O16.1	58465	chr5:58112961:-	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.0773	0.0097	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-479O16.1->chr5:58037408-58112926:-	NCIH2073_LUNG	0.69	1	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TN	8	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0773	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2073_LUNG	1	1	0.0773	FALSE	369	2501	205	193	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	6	8	MTND4P12	1992	chr5:134262735:-	MT-ATP8	5488	chrM:8476:+	INCL_NON_REF_SPLICE	YES	116	287	0.11	0.05	0.058	0.0773	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.05	0.11	0.1353	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	5	11	MTND4P12	1960	chr5:134262767:-	MT-ATP8	5429	chrM:8417:+	INCL_NON_REF_SPLICE	YES	79	0	0.17	1	0.0483	0.1063	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.17	1	0.1546	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	RP11-96H19.1--RP11-446N19.1	7	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	3	0.91	0.77	0.0676	0.029	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2073_LUNG	0.77	0.91	0.0966	FALSE	515	4851	409	746	0	FALSE	ACH-000590
NCIH2073_LUNG	MACROD1--ROM1	7	2	MACROD1	3565	chr11:63918711:-	ROM1	16418	chr11:62381730:+	ONLY_REF_SPLICE	YES	9	1	0.5	0.9	0.0676	0.0193	MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-,ROM1->chr11:62379194-62382592:+,retinal_outer_segment_membrane_protein_1	NCIH2073_LUNG	0.5	0.9	0.0869	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	4	14	MTND4P12	1999	chr5:134262728:-	MT-ATP8	5392	chrM:8380:+	INCL_NON_REF_SPLICE	YES	135	0	0.12	1	0.0387	0.1353	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.12	1	0.174	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	5	9	MTND4P12	1944	chr5:134262783:-	MT-ATP8	5410	chrM:8398:+	INCL_NON_REF_SPLICE	YES	94	0	0.13	1	0.0483	0.087	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.13	1	0.1353	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	PTK2--WI2-1896O14.1	5	9	PTK2	12782	chr8:141900723:-	WI2-1896O14.1	65308	chr1:144679969:-	INCL_NON_REF_SPLICE	YES	245	0	0.05	1	0.0483	0.087	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,WI2-1896O14.1->chr1:144676874-144679969:-	NCIH2073_LUNG	0.05	1	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	AC019221.4--LINGO2	7	0	AC019221.4	1101	chr2:234263320:+	LINGO2	7629	chr9:28670278:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0676	0	AC019221.4->chr2:234263220-234301045:+,LINGO2->chr9:27948076-28670283:-,leucine_rich_repeat_and_Ig_domain_containing_2	NCIH2073_LUNG	1	1	0.0676	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MT-ND3--MT-ATP8	7	0	MT-ND3	1055	chrM:10113:+	MT-ATP8	4411	chrM:8430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0676	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	1	1	0.0676	FALSE	351	233	23	137	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	6	4	MTND4P12	1828	chr5:134262899:-	MT-ATP8	5484	chrM:8472:+	INCL_NON_REF_SPLICE	YES	29	119	0.26	0.08	0.058	0.0387	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.08	0.26	0.0967	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	NRIP1--AF127936.7	7	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0676	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2073_LUNG	1	1	0.0676	FALSE	125	705	46	456	0	FALSE	ACH-000590
NCIH2073_LUNG	RP11-123O10.4--RP11-314D7.1	7	0	RP11-123O10.4	1113	chr12:67462830:-	RP11-314D7.1	6300	chr12:73522941:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0676	0	RP11-123O10.4->chr12:67285656-67462942:-,RP11-314D7.1->chr12:73509737-73537638:-	NCIH2073_LUNG	1	1	0.0676	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	CLIC5--PXDNL	6	2	CLIC5	7603	chr6:45909284:-	PXDNL	28950	chr8:52412330:-	ONLY_REF_SPLICE	YES	5	0	0.62	1	0.058	0.0193	CLIC5->chloride_intracellular_channel_5,chr6:45868045-46048132:-,PXDNL->chr8:52232138-52722005:-,peroxidasin_like	NCIH2073_LUNG	0.62	1	0.0773	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	4	10	MTND4P12	1984	chr5:134262743:-	MT-ATP8	5480	chrM:8468:+	INCL_NON_REF_SPLICE	YES	99	12	0.12	0.54	0.0387	0.0966	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.12	0.54	0.1353	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	6	2	MTND4P12	1773	chr5:134262954:-	MT-ATP8	5480	chrM:8468:+	INCL_NON_REF_SPLICE	YES	20	12	0.29	0.4	0.058	0.0193	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.29	0.4	0.0773	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	5	6	MTND4P12	1967	chr5:134262760:-	MT-ATP8	5487	chrM:8475:+	INCL_NON_REF_SPLICE	YES	90	192	0.11	0.05	0.0483	0.058	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.05	0.11	0.1063	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MPP6--PHF14	6	1	MPP6	1326	chr7:24613212:+	PHF14	51409	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	31	1	0.18	0.058	0.0097	MPP6->chr7:24612887-24733812:+,membrane_palmitoylated_protein_6,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH2073_LUNG	0.18	1	0.0677	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	4	9	MTND4P12	1901	chr5:134262826:-	MT-ATP8	5439	chrM:8427:+	INCL_NON_REF_SPLICE	YES	72	0	0.15	1	0.0387	0.087	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.15	1	0.1257	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	1	1	0.058	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	1	1	0.058	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TC	3	12	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0.116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2073_LUNG	1	1	0.145	FALSE	462	80	0	856	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TY	6	0	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH2073_LUNG	1	1	0.058	FALSE	13	214	14	42	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	6	0	MTND4P12	1317	chr5:134263410:-	MT-ATP8	5513	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	1	1	0.058	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	4	8	MTND4P12	1984	chr5:134262743:-	MT-ATP8	5499	chrM:8487:+	INCL_NON_REF_SPLICE	YES	99	1043	0.11	0.01	0.0387	0.0773	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.01	0.11	0.116	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	PTK2--WI2-1896O14.1	2	16	PTK2	12863	chr8:141900642:-	WI2-1896O14.1	65308	chr1:144679969:-	ONLY_REF_SPLICE	YES	246	0	0.07	1	0.0193	0.1546	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,WI2-1896O14.1->chr1:144676874-144679969:-	NCIH2073_LUNG	0.07	1	0.1739	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PTK2--WI2-1896O14.1	5	3	PTK2	2098	chr8:142011218:-	WI2-1896O14.1	65307	chr1:144679970:-	INCL_NON_REF_SPLICE	YES	244	0	0.03	1	0.0483	0.029	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,WI2-1896O14.1->chr1:144676874-144679969:-	NCIH2073_LUNG	0.03	1	0.0773	TRUE	0	0	0	1	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TC	3	10	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0.0966	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2073_LUNG	1	1	0.1256	FALSE	462	80	0	856	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND3--MT-ATP8	5	1	MT-ND3	1249	chrM:10307:+	MT-ATP8	4495	chrM:8514:+	INCL_NON_REF_SPLICE	YES	106	2091	0.05	0	0.0483	0.0097	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0	0.05	0.058	FALSE	351	233	23	137	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	5	1	MTND4P12	1755	chr5:134262972:-	MT-ATP8	5486	chrM:8474:+	INCL_NON_REF_SPLICE	YES	18	193	0.25	0.03	0.0483	0.0097	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.03	0.25	0.058	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	5	1	MTND4P12	1747	chr5:134262980:-	MT-ATP8	5441	chrM:8429:+	INCL_NON_REF_SPLICE	YES	15	0	0.29	1	0.0483	0.0097	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.29	1	0.058	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TY	5	0	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH2073_LUNG	1	1	0.0483	FALSE	13	214	14	42	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	3	8	MTND4P12	1875	chr5:134262852:-	MT-ATP8	5449	chrM:8437:+	INCL_NON_REF_SPLICE	YES	67	0	0.14	1	0.029	0.0773	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.14	1	0.1063	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	5	0	MTND4P12	1380	chr5:134263347:-	MT-ATP8	5419	chrM:8407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	1	1	0.0483	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND3--MT-ATP8	4	3	MT-ND3	1249	chrM:10307:+	MT-ATP8	4427	chrM:8446:+	INCL_NON_REF_SPLICE	YES	106	0	0.06	1	0.0387	0.029	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.06	1	0.0677	FALSE	351	233	23	137	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND3--MT-ATP8	4	3	MT-ND3	1290	chrM:10348:+	MT-ATP8	4418	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0387	0.029	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.88	1	0.0677	FALSE	351	233	23	137	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	3	7	MTND4P12	1875	chr5:134262852:-	MT-ATP8	5476	chrM:8464:+	INCL_NON_REF_SPLICE	YES	67	5	0.13	0.67	0.029	0.0676	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.13	0.67	0.0966	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MPP6--PHF14	4	1	MPP6	1326	chr7:24613212:+	PHF14	44314	chr7:11101591:+	ONLY_REF_SPLICE	YES	0	50	1	0.09	0.0387	0.0097	MPP6->chr7:24612887-24733812:+,membrane_palmitoylated_protein_6,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH2073_LUNG	0.09	1	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	4	1	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.0387	0.0097	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	0.71	1	0.0484	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2073_LUNG	1	1	0.0387	FALSE	499	1288	110	792	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TN	4	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2073_LUNG	1	1	0.0387	FALSE	369	2501	205	193	0	FALSE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TY	4	0	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH2073_LUNG	1	1	0.0387	FALSE	13	214	14	42	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	4	0	MTND4P12	1738	chr5:134262989:-	MT-ATP8	5432	chrM:8420:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	1	1	0.0387	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MPP6--PHF14	3	3	MPP6	2011	chr7:24613897:+	PHF14	44141	chr7:11101418:+	ONLY_REF_SPLICE	YES	1	53	0.86	0.1	0.029	0.029	MPP6->chr7:24612887-24733812:+,membrane_palmitoylated_protein_6,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH2073_LUNG	0.1	0.86	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	3	3	MTND4P12	1753	chr5:134262974:-	MT-ATP8	5448	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18	0	0.25	1	0.029	0.029	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.25	1	0.058	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	3	3	MTND4P12	1762	chr5:134262965:-	MT-ATP8	5464	chrM:8452:+	INCL_NON_REF_SPLICE	YES	18	0	0.25	1	0.029	0.029	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.25	1	0.058	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	FCHSD2--SLC22A20	3	2	FCHSD2	4185	chr11:72794740:-	SLC22A20	37531	chr11:65003880:+	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.029	0.0193	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,SLC22A20->chr11:64981311-65010228:+,solute_carrier_family_22_member_20	NCIH2073_LUNG	0.36	1	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MT-ND3--MT-ATP8	3	2	MT-ND3	1293	chrM:10351:+	MT-ATP8	4465	chrM:8484:+	INCL_NON_REF_SPLICE	YES	1	863	0.83	0.01	0.029	0.0193	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.01	0.83	0.0483	FALSE	351	233	23	137	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	3	2	MTND4P12	1759	chr5:134262968:-	MT-ATP8	5468	chrM:8456:+	INCL_NON_REF_SPLICE	YES	18	0	0.22	1	0.029	0.0193	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	0.22	1	0.0483	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	PTK2--WI2-1896O14.1	3	1	PTK2	2086	chr8:142011230:-	WI2-1896O14.1	65308	chr1:144679969:-	INCL_NON_REF_SPLICE	YES	115	0	0.03	1	0.029	0.0097	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,WI2-1896O14.1->chr1:144676874-144679969:-	NCIH2073_LUNG	0.03	1	0.0387	TRUE	0	0	0	1	0	FALSE	ACH-000590
NCIH2073_LUNG	CAND1--C12orf56	3	0	CAND1	12146	chr12:67699092:+	C12orf56	32493	chr12:64712760:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1,C12orf56->chr12:64660217-64784972:-,chromosome_12_open_reading_frame_56	NCIH2073_LUNG	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	FGD4--RP1-27K12.4	3	0	FGD4	1431	chr12:32552893:+	RP1-27K12.4	39151	chr6:53371126:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,RP1-27K12.4->chr6:53367983-53371717:+	NCIH2073_LUNG	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	FGD4--RP1-27K12.4	3	0	FGD4	1431	chr12:32552893:+	RP1-27K12.4	39621	chr6:53371596:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,RP1-27K12.4->chr6:53367983-53371717:+	NCIH2073_LUNG	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MT-TA--MT-TY	3	0	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH2073_LUNG	1	1	0.029	FALSE	13	214	14	42	0	FALSE	ACH-000590
NCIH2073_LUNG	MTND4P12--MT-ATP8	3	0	MTND4P12	1470	chr5:134263257:-	MT-ATP8	5428	chrM:8416:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2073_LUNG	1	1	0.029	FALSE	19	17	1	5	0	FALSE	ACH-000590
NCIH2073_LUNG	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2073_LUNG	1	1	0.029	FALSE	25	145	6	90	0	FALSE	ACH-000590
NCIH2073_LUNG	PDE4D--RP11-479O16.1	3	0	PDE4D	19661	chr5:59064073:-	RP11-479O16.1	62765	chr5:58037827:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-479O16.1->chr5:58037408-58112926:-	NCIH2073_LUNG	1	1	0.029	TRUE	0	1	0	1	1	TRUE	ACH-000590
NCIH2073_LUNG	R3HCC1L--PLEKHJ1	2	4	R3HCC1L	8585	chr10:99971105:+	PLEKHJ1	22844	chr19:2230611:-	ONLY_REF_SPLICE	YES	5	3	0.55	0.67	0.0193	0.0387	R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+,PLEKHJ1->chr19:2230002-2237703:-,pleckstrin_homology_domain_containing_J1	NCIH2073_LUNG	0.55	0.67	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	RP11-123O10.4--GRIP1	3	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2073_LUNG	1	1	0.029	FALSE	93	270	15	244	0	FALSE	ACH-000590
NCIH2073_LUNG	TBC1D30--RP11-314D7.2	3	0	TBC1D30	2643	chr12:65179825:+	RP11-314D7.2	29184	chr12:73556974:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	TBC1D30->TBC1_domain_family_member_30,chr12:65174589-65274812:+,RP11-314D7.2->chr12:73552970-73602097:+	NCIH2073_LUNG	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PDE4D--RP11-479O16.1	2	3	PDE4D	26151	chr5:58571164:-	RP11-479O16.1	62765	chr5:58037827:-	ONLY_REF_SPLICE	YES	4	3	0.56	0.62	0.0193	0.029	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-479O16.1->chr5:58037408-58112926:-	NCIH2073_LUNG	0.56	0.62	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0097	0.0676	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2073_LUNG	1	1	0.0773	FALSE	192	492	57	212	0	FALSE	ACH-000590
NCIH2073_LUNG	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	48	0.75	0.06	0.0193	0.0097	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2073_LUNG	0.06	0.75	0.029	FALSE	16	356	14	466	0	FALSE	ACH-000590
NCIH2073_LUNG	SKAP2--AOAH	2	1	SKAP2	9876	chr7:26883649:-	AOAH	28807	chr7:36726399:-	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0193	0.0097	SKAP2->chr7:26706681-27034858:-,src_kinase_associated_phosphoprotein_2,AOAH->acyloxyacyl_hydrolase,chr7:36552456-36764154:-	NCIH2073_LUNG	0.27	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	DPY19L1P1--ITSN2	2	0	DPY19L1P1	5676	chr7:32763125:-	ITSN2	63353	chr2:24443935:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	DPY19L1P1->DPY19L1_pseudogene_1,chr7:32620561-32801399:-,ITSN2->chr2:24425733-24583583:-,intersectin_2	NCIH2073_LUNG	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	MEX3C--RP11-267C16.1	2	0	MEX3C	2797	chr18:48722937:-	RP11-267C16.1	25359	chr18:49086963:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	MEX3C->chr18:48700920-48744674:-,mex-3_RNA_binding_family_member_C,RP11-267C16.1->chr18:48872619-49088939:+	NCIH2073_LUNG	1	1	0.0193	TRUE	0	1	0	1	1	TRUE	ACH-000590
NCIH2073_LUNG	MKLN1-AS1--EXOC6B	2	0	MKLN1-AS1	3457	chr7:130792479:-	EXOC6B	20507	chr2:72968598:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	MKLN1-AS1->chr7:130626519-130794935:-,EXOC6B->chr2:72403113-73053170:-,exocyst_complex_component_6B	NCIH2073_LUNG	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PDE4D--RP11-479O16.1	1	4	PDE4D	26151	chr5:58571164:-	RP11-479O16.1	60623	chr5:58110572:-	ONLY_REF_SPLICE	YES	4	1	0.56	0.83	0.0097	0.0387	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-479O16.1->chr5:58037408-58112926:-	NCIH2073_LUNG	0.56	0.83	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	TMEM67--C10orf76	2	0	TMEM67	4381	chr8:94770804:+	C10orf76	53491	chr10:103755112:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	TMEM67->chr8:94767072-94831462:+,transmembrane_protein_67,C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76	NCIH2073_LUNG	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	PTK2--WI2-1896O14.1	1	3	PTK2	2092	chr8:142011224:-	WI2-1896O14.1	65308	chr1:144679969:-	ONLY_REF_SPLICE	YES	157	0	0.02	1	0.0097	0.029	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,WI2-1896O14.1->chr1:144676874-144679969:-	NCIH2073_LUNG	0.02	1	0.0387	TRUE	0	0	0	1	0	FALSE	ACH-000590
NCIH2073_LUNG	MPP6--PHF14	1	2	MPP6	2011	chr7:24613897:+	PHF14	44314	chr7:11101591:+	ONLY_REF_SPLICE	YES	1	50	0.75	0.06	0.0097	0.0193	MPP6->chr7:24612887-24733812:+,membrane_palmitoylated_protein_6,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH2073_LUNG	0.06	0.75	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	AP3D1--R3HCC1L	1	1	AP3D1	2438	chr19:2151238:-	R3HCC1L	38982	chr10:99991269:+	ONLY_REF_SPLICE	YES	16	5	0.11	0.29	0.0097	0.0097	AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+	NCIH2073_LUNG	0.11	0.29	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	CAND1--C12orf56	1	1	CAND1	13431	chr12:67700377:+	C12orf56	33899	chr12:64706532:-	ONLY_REF_SPLICE	NO	186	8	0.01	0.2	0.0097	0.0097	CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1,C12orf56->chr12:64660217-64784972:-,chromosome_12_open_reading_frame_56	NCIH2073_LUNG	0.01	0.2	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000590
NCIH2073_LUNG	CTNNA1--ME2	1	1	CTNNA1	17161	chr5:138163407:+	ME2	42309	chr18:48422179:+	ONLY_REF_SPLICE	YES	744	14	0	0.12	0.0097	0.0097	CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,ME2->chr18:48405419-48474691:+,malic_enzyme_2	NCIH2073_LUNG	0	0.12	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000590
NCIH2073_LUNG	PDE4D--RP11-479O16.1	1	1	PDE4D	19661	chr5:59064073:-	RP11-479O16.1	60623	chr5:58110572:-	ONLY_REF_SPLICE	YES	4	1	0.33	0.67	0.0097	0.0097	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-479O16.1->chr5:58037408-58112926:-	NCIH2073_LUNG	0.33	0.67	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	POLR2A--SF3B2	1	1	POLR2A	10343	chr17:7407110:+	SF3B2	28943	chr11:65826672:+	ONLY_REF_SPLICE	YES	102	225	0.02	0.01	0.0097	0.0097	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,SF3B2->chr11:65818200-65836779:+,splicing_factor_3b_subunit_2	NCIH2073_LUNG	0.01	0.02	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000590
NCIH2073_LUNG	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0097	0.0097	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH2073_LUNG	1	1	0.0194	FALSE	81	155	12	160	0	FALSE	ACH-000590
NCIH2073_LUNG	VPS41--ABCA13	1	1	VPS41	24673	chr7:38797954:-	ABCA13	97661	chr7:48494634:+	ONLY_REF_SPLICE	YES	26	0	0.07	1	0.0097	0.0097	VPS41->VPS41,_HOPS_complex_subunit,chr7:38762563-38971994:-,ABCA13->ATP_binding_cassette_subfamily_A_member_13,chr7:48211055-48687092:+	NCIH2073_LUNG	0.07	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	XRCC6BP1--TBC1D30	1	1	XRCC6BP1	6790	chr12:58347472:+	TBC1D30	12852	chr12:65179661:+	ONLY_REF_SPLICE	YES	24	7	0.08	0.22	0.0097	0.0097	XRCC6BP1->chr12:58335324-58351052:+,TBC1D30->TBC1_domain_family_member_30,chr12:65174589-65274812:+	NCIH2073_LUNG	0.08	0.22	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000590
NCIH2073_LUNG	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	901	17	0	0.11	0.0097	0.0097	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NCIH2073_LUNG	0	0.11	0.0194	FALSE	6	50	7	115	0	FALSE	ACH-000590
YD10B_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	25	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4644	0.0557	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.5201	FALSE	462	80	0	856	0	FALSE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	PKM--HEXA	12	5	PKM	8848	chr15:72509750:-	HEXA	34723	chr15:72645519:-	ONLY_REF_SPLICE	YES	581	19	0.03	0.47	0.2229	0.0929	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,HEXA->chr15:72635775-72668817:-,hexosaminidase_subunit_alpha	YD10B_UPPER_AERODIGESTIVE_TRACT	0.03	0.47	0.3158	TRUE	0	0	0	1	0	FALSE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	TMC6--TK1	9	4	TMC6	6237	chr17:76121807:-	TK1	22209	chr17:76183302:-	INCL_NON_REF_SPLICE	YES	8	0	0.62	1	0.1672	0.0743	LOCAL_REARRANGEMENT:-:[41672],TMC6->chr17:76106539-76128488:-,transmembrane_channel_like_6,TK1->Oncogene{Bushman},chr17:76170160-76183314:-,thymidine_kinase_1	YD10B_UPPER_AERODIGESTIVE_TRACT	0.62	1	0.2415	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0743	FALSE	499	1288	110	792	0	FALSE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0743	FALSE	462	80	0	856	0	FALSE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	SMARCA4--TM9SF2	4	0	SMARCA4	33650	chr19:11144108:+	TM9SF2	46782	chr13:100153752:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,TM9SF2->chr13:100153671-100216260:+,transmembrane_9_superfamily_member_2	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0.0557	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.1114	FALSE	462	80	0	856	0	FALSE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0.0557	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.1114	FALSE	462	80	0	856	0	FALSE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	AEBP2--UNK	3	0	AEBP2	12885	chr12:19672865:+	UNK	22367	chr17:73790088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	COL7A1--SF3B3	3	0	COL7A1	9223	chr3:48624478:-	SF3B3	63137	chr16:70605032:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1,SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	CREB3--FAM192A	3	0	CREB3	4583	chr9:35736537:+	FAM192A	19196	chr16:57188104:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	CREB3->cAMP_responsive_element_binding_protein_3,chr9:35732332-35737001:+,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	EIF3A--EML4	3	0	EIF3A	15081	chr10:120809396:-	EML4	30400	chr2:42488277:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	EIF3A->Oncogene{Bushman},chr10:120794356-120840316:-,eukaryotic_translation_initiation_factor_3_subunit_A,EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	LDHB--HNRNPH1	3	0	LDHB	5269	chr12:21807502:-	HNRNPH1	26593	chr5:179043145:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	LDHB->chr12:21788276-21910791:-,lactate_dehydrogenase_B,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	FALSE	499	1288	110	792	0	FALSE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	MT-TA--SLC25A3	3	0	MT-TA	1056	chrM:5600:-	SLC25A3	6253	chr12:98989552:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,SLC25A3->chr12:98987369-98995946:+,solute_carrier_family_25_member_3	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	FALSE	0	0	0	1	0	FALSE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	MT2A--TMOD3	3	0	MT2A	2181	chr16:56643291:+	TMOD3	20748	chr15:52203211:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	MT2A->chr16:56642111-56643409:+,metallothionein_2A,TMOD3->chr15:52121825-52239492:+,tropomodulin_3	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	NUP62--BHLHE40	3	0	NUP62	11243	chr19:50410554:-	BHLHE40	18389	chr3:5024699:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	NUP62->chr19:50410082-50433020:-,nucleoporin_62kDa,BHLHE40->basic_helix-loop-helix_family_member_e40,chr3:5020801-5027008:+	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	PGD--AGFG1	3	0	PGD	13685	chr1:10480140:+	AGFG1	33973	chr2:228419237:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	PGD->chr1:10458649-10480201:+,phosphogluconate_dehydrogenase,AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	PIGQ--FGFBP1	3	0	PIGQ	6873	chr16:624349:+	FGFBP1	19998	chr4:15939949:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	PIGQ->chr16:616995-634136:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_Q,FGFBP1->chr4:15937192-15940363:-,fibroblast_growth_factor_binding_protein_1	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	SGK1--SLC52A2	3	0	SGK1	20002	chr6:134491021:-	SLC52A2	28332	chr8:145584047:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	SGK1->chr6:134490384-134639250:-,serum/glucocorticoid_regulated_kinase_1,SLC52A2->chr8:145577795-145584932:+,solute_carrier_family_52_member_2	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	SLC8A1--MYO1B	3	0	SLC8A1	7913	chr2:40656421:-	MYO1B	69894	chr2:192266537:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	SLC8A1->chr2:40324410-40838193:-,solute_carrier_family_8_member_A1,MYO1B->chr2:192109911-192290115:+,myosin_IB	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	TBC1D10B--TRA2B	3	0	TBC1D10B	10011	chr16:30368632:-	TRA2B	23708	chr3:185642420:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	TBC1D10B->TBC1_domain_family_member_10B,chr16:30368423-30381585:-,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	AC004980.7--PRDM10	2	0	AC004980.7	2605	chr7:76180839:+	PRDM10	12225	chr11:129830977:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	AC004980.7->chr7:76178677-76257299:+,PRDM10->PR_domain_10,chr11:129769601-129872730:-	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	C7orf50--SUN1	2	0	C7orf50	3078	chr7:1166893:-	SUN1	41103	chr7:908986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	2	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	C9orf3--MKI67	2	0	C9orf3	20609	chr9:97730083:+	MKI67	44370	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	CASP10--NOP58	2	0	CASP10	12932	chr2:202074285:+	NOP58	23756	chr2:203139836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	CASP10->caspase_10,chr2:202047604-202094129:+,NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	EFEMP1--WDPCP	2	0	EFEMP1	2780	chr2:56149495:-	WDPCP	28202	chr2:63711797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	EFEMP1->EGF_containing_fibulin-like_extracellular_matrix_protein_1,chr2:56093102-56151274:-,WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	ELK1--KCMF1	2	0	ELK1	6550	chrX:47497150:-	KCMF1	20920	chr2:85280271:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	ELK1->ELK1,_ETS_transcription_factor,Oncogene{Bushman},chrX:47494920-47510003:-,KCMF1->Oncogene{Bushman},chr2:85198216-85286595:+,potassium_channel_modulatory_factor_1	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	GLI3--OGDH	2	0	GLI3	8007	chr7:42187825:-	OGDH	32567	chr7:44663916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	GLI3->GLI_family_zinc_finger_3,Oncogene{Bushman},chr7:42000548-42277469:-,OGDH->chr7:44646171-44748665:+,oxoglutarate_dehydrogenase	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	INADL--SH3RF2	2	0	INADL	7061	chr1:62241006:+	SH3RF2	62241	chr5:145317386:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	INADL->Oncogene{Bushman},chr1:62208149-62629592:+,SH3RF2->SH3_domain_containing_ring_finger_2,chr5:145316142-145461354:+	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	LMNA--OBSCN	2	0	LMNA	8776	chr1:156085065:+	OBSCN	26186	chr1:228401142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	LMNA->chr1:156052364-156109880:+,lamin_A/C,OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	NDE1--CNTROB	2	0	NDE1	3608	chr16:15744151:+	CNTROB	30122	chr17:7839684:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	NDE1->chr16:15737124-15820210:+,nudE_neurodevelopment_protein_1,CNTROB->centrobin,_centriole_duplication_and_spindle_assembly_protein,chr17:7835419-7853236:+	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	NDRG1--RNH1	2	0	NDRG1	10086	chr8:134276790:-	RNH1	36682	chr11:502249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	NDRG1->N-myc_downstream_regulated_1,Oncogene{Bushman},chr8:134249414-134314265:-,RNH1->chr11:494512-507300:-,ribonuclease/angiogenin_inhibitor_1	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	SMIM11--CEP170	2	0	SMIM11	3956	chr21:35757942:+	CEP170	18418	chr1:243388623:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	SMIM11->chr21:35747779-35780164:+,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	TARS--MPHOSPH8	2	0	TARS	5801	chr5:33448837:+	MPHOSPH8	38777	chr13:20245346:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	TARS->chr5:33440802-33469644:+,threonyl-tRNA_synthetase,MPHOSPH8->M-phase_phosphoprotein_8,chr13:20207788-20247599:+	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	UBL7-AS1--TPM1	2	0	UBL7-AS1	4164	chr15:74771619:+	TPM1	15309	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	UBL7-AS1->UBL7_antisense_RNA_1_(head_to_head),chr15:74753606-74773643:+,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	YD10B_UPPER_AERODIGESTIVE_TRACT	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
YD10B_UPPER_AERODIGESTIVE_TRACT	RAP2A--COL4A1	1	1	RAP2A	1563	chr13:98087038:+	COL4A1	51151	chr13:110807744:-	ONLY_REF_SPLICE	YES	7	4	0.22	0.33	0.0186	0.0186	RAP2A->Oncogene{Bushman},RAP2A,_member_of_RAS_oncogene_family,chr13:98086476-98121382:+,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	YD10B_UPPER_AERODIGESTIVE_TRACT	0.22	0.33	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000723
COLO783_SKIN	RP11-444D3.1--SOX5	78	35	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	18	1	0.86	0.8902	0.3995	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	COLO783_SKIN	0.86	1	1.2897	TRUE	477	1352	189	275	0	FALSE	ACH-000812
COLO783_SKIN	TIMM23B--LINC00843	69	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7875	0.3766	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COLO783_SKIN	0.99	1	1.1641	TRUE	508	994	45	981	0	FALSE	ACH-000812
COLO783_SKIN	MT-TA--MT-TC	58	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6619	0.0571	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO783_SKIN	1	1	0.719	FALSE	462	80	0	856	0	FALSE	ACH-000812
COLO783_SKIN	TIMM23--RP11-464F9.1	42	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	203	1	0.18	0.98	0.4793	0.0342	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	COLO783_SKIN	0.18	0.98	0.5135	TRUE	519	3926	326	965	0	FALSE	ACH-000812
COLO783_SKIN	MSRA--PVT1	35	22	MSRA	1391	chr8:9912168:+	PVT1	41883	chr8:129108764:+	ONLY_REF_SPLICE	YES	6	34	0.9	0.63	0.3995	0.2511	MSRA->chr8:9911778-10286401:+,methionine_sulfoxide_reductase_A,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	COLO783_SKIN	0.63	0.9	0.6506	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	NCOA3--EYA2	27	42	NCOA3	1163	chr20:46130763:+	EYA2	46927	chr20:45808446:+	ONLY_REF_SPLICE	YES	29	0	0.7	1	0.3081	0.4793	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	COLO783_SKIN	0.7	1	0.7874	TRUE	0	0	0	2	0	TRUE	ACH-000812
COLO783_SKIN	MSRA--PVT1	30	26	MSRA	1391	chr8:9912168:+	PVT1	39585	chr8:129082406:+	ONLY_REF_SPLICE	YES	6	41	0.9	0.58	0.3424	0.2967	MSRA->chr8:9911778-10286401:+,methionine_sulfoxide_reductase_A,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	COLO783_SKIN	0.58	0.9	0.6391	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	MT-ND6--MT-TE	35	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3995	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO783_SKIN	1	1	0.3995	FALSE	499	1288	110	792	0	FALSE	ACH-000812
COLO783_SKIN	FANCL--FAM110C	29	11	FANCL	1155	chr2:58468353:-	FAM110C	22301	chr2:41627:-	ONLY_REF_SPLICE	YES	52	0	0.43	1	0.331	0.1255	FANCL->ArcherDX_panel,Fanconi_anemia_complementation_group_L,FoundationOne_panel,chr2:58386378-58468507:-,FAM110C->chr2:38814-46870:-,family_with_sequence_similarity_110_member_C	COLO783_SKIN	0.43	1	0.4565	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	RP11-444D3.1--SOX5	17	38	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	22	1	0.71	0.194	0.4337	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	COLO783_SKIN	0.71	1	0.6277	TRUE	160	277	29	98	0	FALSE	ACH-000812
COLO783_SKIN	GAB2--NARS2	21	11	GAB2	6290	chr11:77991647:-	NARS2	34308	chr11:78180359:-	ONLY_REF_SPLICE	YES	62	106	0.34	0.23	0.2397	0.1255	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[17613],GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	COLO783_SKIN	0.23	0.34	0.3652	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	KANSL1--ARL17B	21	9	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	19	38	0.61	0.44	0.2397	0.1027	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	COLO783_SKIN	0.44	0.61	0.3424	TRUE	181	1564	124	196	0	FALSE	ACH-000812
COLO783_SKIN	RP11-403B2.7--RP11-403B2.6	12	39	RP11-403B2.7	1254	chr15:20961259:-	RP11-403B2.6	7754	chr15:20965236:-	ONLY_REF_SPLICE	YES	2	0	0.96	1	0.137	0.4451	GTEx_FI:{Brain=[count:17=pct:2.6],Esophagus=[count:15=pct:3.7],Blood_Vessel=[count:8=pct:2.2],Skin=[count:7=pct:2.2],Thyroid=[count:5=pct:2.8],Prostate=[count:4=pct:6.6],Lung=[count:4=pct:2.4],Heart=[count:3=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Blood=[count:2=pct:1.1],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},LOCAL_REARRANGEMENT:-:[3128],RP11-403B2.7->chr15:20935076-20961512:-,RP11-403B2.6->chr15:20964640-20980123:-	COLO783_SKIN	0.96	1	0.5821	TRUE	22	66	5	11	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND4--MT-ND4L	5	58	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	NO	6	0	0.91	1	0.0571	0.6619	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO783_SKIN	0.91	1	0.719	FALSE	344	826	44	306	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND6--MT-TE	17	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.83	1	0.194	0.0799	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO783_SKIN	0.83	1	0.2739	FALSE	499	1288	110	792	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND4--MT-ND4L	4	57	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0457	0.6505	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO783_SKIN	0.97	1	0.6962	FALSE	344	826	44	306	0	FALSE	ACH-000812
COLO783_SKIN	NIPA2--POLA1	18	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2054	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	COLO783_SKIN	1	1	0.2054	TRUE	46	1352	75	139	0	FALSE	ACH-000812
COLO783_SKIN	RP11-123O10.4--GRIP1	17	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	3	1	0.86	0.194	0.0228	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO783_SKIN	0.86	1	0.2168	FALSE	416	2512	207	587	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND4--MT-ND4L	8	34	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	47	0	0.47	1	0.0913	0.388	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO783_SKIN	0.47	1	0.4793	FALSE	344	827	44	306	0	FALSE	ACH-000812
COLO783_SKIN	MT-TC--MT-TY	16	1	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1826	0.0114	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	COLO783_SKIN	1	1	0.194	FALSE	51	280	19	36	0	FALSE	ACH-000812
COLO783_SKIN	NRIP1--AF127936.7	14	7	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.84	1	0.1598	0.0799	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO783_SKIN	0.84	1	0.2397	FALSE	292	1546	117	613	0	FALSE	ACH-000812
COLO783_SKIN	RP1-34H18.1--NAV3	13	9	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1484	0.1027	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	COLO783_SKIN	1	1	0.2511	TRUE	254	575	65	124	0	FALSE	ACH-000812
COLO783_SKIN	TULP4--RP1-249F5.3	14	5	TULP4	15371	chr6:158919844:+	RP1-249F5.3	28124	chr6:160320218:+	ONLY_REF_SPLICE	YES	9	0	0.68	1	0.1598	0.0571	TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP1-249F5.3->chr6:160320218-160323542:+	COLO783_SKIN	0.68	1	0.2169	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	MT-ND6--MT-TE	14	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1598	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO783_SKIN	1	1	0.1598	FALSE	499	1288	110	792	0	FALSE	ACH-000812
COLO783_SKIN	MT-TA--MT-TC	12	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.137	0.0571	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO783_SKIN	1	1	0.1941	FALSE	462	80	0	856	0	FALSE	ACH-000812
COLO783_SKIN	RP11-444D3.1--SOX5	7	23	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	18	1	0.62	0.0799	0.2625	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	COLO783_SKIN	0.62	1	0.3424	TRUE	274	363	69	150	0	FALSE	ACH-000812
COLO783_SKIN	FGFR2--COL14A1	12	2	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.137	0.0228	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	COLO783_SKIN	0.88	1	0.1598	TRUE	0	0	0	32	0	FALSE	ACH-000812
COLO783_SKIN	NCOA3--EYA2	5	28	NCOA3	1163	chr20:46130763:+	EYA2	47944	chr20:45809463:+	ONLY_REF_SPLICE	YES	29	9	0.53	0.79	0.0571	0.3196	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	COLO783_SKIN	0.53	0.79	0.3767	TRUE	0	0	0	2	0	TRUE	ACH-000812
COLO783_SKIN	RP11-680G10.1--GSE1	11	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1255	0.0228	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COLO783_SKIN	1	1	0.1483	TRUE	458	1351	185	561	0	FALSE	ACH-000812
COLO783_SKIN	NRIP1--AF127936.7	8	10	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	25	0	0.42	1	0.0913	0.1141	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO783_SKIN	0.42	1	0.2054	FALSE	125	705	46	456	0	FALSE	ACH-000812
COLO783_SKIN	PLEKHM2--KAZN	9	3	PLEKHM2	2867	chr1:16043311:+	KAZN	26420	chr1:15361245:+	ONLY_REF_SPLICE	YES	194	57	0.06	0.17	0.1027	0.0342	PLEKHM2->chr1:16010827-16061264:+,pleckstrin_homology_and_RUN_domain_containing_M2,KAZN->chr1:14925200-15444539:+,kazrin,_periplakin_interacting_protein	COLO783_SKIN	0.06	0.17	0.1369	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	CDKN3--RP11-314P15.2	9	2	CDKN3	3373	chr14:54868297:+	RP11-314P15.2	15462	chr14:26595421:-	ONLY_REF_SPLICE	YES	689	0	0.02	1	0.1027	0.0228	CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3,RP11-314P15.2->chr14:26305064-26612511:-	COLO783_SKIN	0.02	1	0.1255	TRUE	0	0	0	1	0	FALSE	ACH-000812
COLO783_SKIN	MSRA--PVT1	3	26	MSRA	1391	chr8:9912168:+	PVT1	36568	chr8:129021836:+	ONLY_REF_SPLICE	YES	6	38	0.83	0.43	0.0342	0.2967	MSRA->chr8:9911778-10286401:+,methionine_sulfoxide_reductase_A,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	COLO783_SKIN	0.43	0.83	0.3309	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	PVT1--RP11-667F9.2	8	6	PVT1	10746	chr8:128951922:+	RP11-667F9.2	28754	chr7:64928286:+	ONLY_REF_SPLICE	YES	58	0	0.19	1	0.0913	0.0685	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-667F9.2->chr7:64927984-64928351:+	COLO783_SKIN	0.19	1	0.1598	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2301	0	0	1	0.1027	0.0114	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO783_SKIN	0	1	0.1141	FALSE	13	9	0	364	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND4--MT-ATP8	8	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	10413	2	0	0.82	0.0913	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO783_SKIN	0	0.82	0.1027	FALSE	230	193	14	283	0	FALSE	ACH-000812
COLO783_SKIN	C15orf57--CBX3	6	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	45	58	0.24	0.19	0.0685	0.0913	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COLO783_SKIN	0.19	0.24	0.1598	TRUE	267	562	48	632	0	FALSE	ACH-000812
COLO783_SKIN	C15orf57--CBX3	6	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	45	59	0.22	0.18	0.0685	0.0799	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COLO783_SKIN	0.18	0.22	0.1484	TRUE	267	562	48	632	0	FALSE	ACH-000812
COLO783_SKIN	MT-ATP6--MT-CO1	7	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0799	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO783_SKIN	1	1	0.0799	FALSE	183	104	9	328	0	FALSE	ACH-000812
COLO783_SKIN	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0799	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO783_SKIN	1	1	0.0799	FALSE	462	80	0	856	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND1--MT-RNR2	3	15	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4	0	0.82	1	0.0342	0.1712	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO783_SKIN	0.82	1	0.2054	FALSE	114	26	4	85	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND4--MT-ATP8	6	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12153	8	0	0.5	0.0685	0.0228	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO783_SKIN	0	0.5	0.0913	FALSE	231	205	14	283	0	FALSE	ACH-000812
COLO783_SKIN	MSRA--PVT1	1	21	MSRA	1391	chr8:9912168:+	PVT1	41886	chr8:129108767:+	ONLY_REF_SPLICE	YES	6	34	0.79	0.39	0.0114	0.2397	MSRA->chr8:9911778-10286401:+,methionine_sulfoxide_reductase_A,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	COLO783_SKIN	0.39	0.79	0.2511	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	MT-ND6--MT-TE	4	9	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.76	1	0.0457	0.1027	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO783_SKIN	0.76	1	0.1484	FALSE	499	1288	110	792	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND4--MT-ND4L	3	11	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	6	0	0.7	1	0.0342	0.1255	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO783_SKIN	0.7	1	0.1597	FALSE	344	826	44	306	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND4--MT-ND4L	3	11	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	1	1	0.93	0.93	0.0342	0.1255	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO783_SKIN	0.93	0.93	0.1597	FALSE	344	821	44	306	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND6--MT-TE	4	7	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0457	0.0799	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO783_SKIN	0.85	1	0.1256	FALSE	499	1288	110	792	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND4--MT-ND4L	4	6	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	292	0	0.03	1	0.0457	0.0685	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO783_SKIN	0.03	1	0.1142	FALSE	344	827	44	306	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND4--MT-ATP8	4	5	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	12819	0	0	1	0.0457	0.0571	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO783_SKIN	0	1	0.1028	FALSE	231	217	16	283	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND6--MT-TE	3	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.71	1	0.0342	0.1027	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO783_SKIN	0.71	1	0.1369	FALSE	499	1288	110	792	0	FALSE	ACH-000812
COLO783_SKIN	C7orf63--AC002127.4	5	0	C7orf63	2431	chr7:89884796:+	AC002127.4	35122	chr7:88371331:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0571	0	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},C7orf63->chr7:89874488-89940377:+,AC002127.4->chr7:88339945-88386039:+	COLO783_SKIN	1	1	0.0571	TRUE	1	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	MT-ND4--MT-ATP8	3	7	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	13201	0	0	1	0.0342	0.0799	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO783_SKIN	0	1	0.1141	FALSE	231	217	16	283	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND4--MT-ATP8	4	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12784	8	0	0.47	0.0457	0.0342	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO783_SKIN	0	0.47	0.0799	FALSE	231	217	16	283	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND4--MT-ND4L	4	3	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	11	0	0.39	1	0.0457	0.0342	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO783_SKIN	0.39	1	0.0799	FALSE	344	826	44	306	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND4--MT-ATP8	4	2	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	12966	0	0	1	0.0457	0.0228	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO783_SKIN	0	1	0.0685	FALSE	231	217	16	283	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND6--MT-TE	3	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.0571	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO783_SKIN	1	1	0.0913	FALSE	499	1288	110	792	0	FALSE	ACH-000812
COLO783_SKIN	MT-TA--MT-TC	3	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.0571	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO783_SKIN	1	1	0.0913	FALSE	462	80	0	856	0	FALSE	ACH-000812
COLO783_SKIN	C7orf63--AC002127.4	4	0	C7orf63	1371	chr7:89874858:+	AC002127.4	35122	chr7:88371331:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0457	0	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},C7orf63->chr7:89874488-89940377:+,AC002127.4->chr7:88339945-88386039:+	COLO783_SKIN	1	1	0.0457	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	MDGA2--MTA1	3	4	MDGA2	20956	chr14:47351247:-	MTA1	35744	chr14:105905009:+	ONLY_REF_SPLICE	YES	16	1	0.3	0.88	0.0342	0.0457	MDGA2->MAM_domain_containing_glycosylphosphatidylinositol_anchor_2,chr14:47308826-48144157:-,chr14:47311134-48143999:-,MTA1->Oncogene{Bushman},chr14:105886159-105937066:+,metastasis_associated_1	COLO783_SKIN	0.3	0.88	0.0799	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO783_SKIN	1	1	0.0457	FALSE	499	1288	110	792	0	FALSE	ACH-000812
COLO783_SKIN	NCOA3--EYA2	2	8	NCOA3	1163	chr20:46130763:+	EYA2	49066	chr20:45811939:+	ONLY_REF_SPLICE	YES	29	19	0.26	0.34	0.0228	0.0913	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	COLO783_SKIN	0.26	0.34	0.1141	TRUE	0	0	0	2	0	TRUE	ACH-000812
COLO783_SKIN	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0457	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COLO783_SKIN	1	1	0.0457	TRUE	465	1949	224	605	0	FALSE	ACH-000812
COLO783_SKIN	MT-ATP6--MT-CO1	3	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3167	19001	0	0	0.0342	0.0342	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO783_SKIN	0	0	0.0684	FALSE	183	104	9	328	0	FALSE	ACH-000812
COLO783_SKIN	PVT1--RP11-667F9.2	3	3	PVT1	8346	chr8:128903244:+	RP11-667F9.2	28754	chr7:64928286:+	ONLY_REF_SPLICE	YES	72	0	0.08	1	0.0342	0.0342	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-667F9.2->chr7:64927984-64928351:+	COLO783_SKIN	0.08	1	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	MT-ND4--MT-ATP8	3	2	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	13600	0	0	1	0.0342	0.0228	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO783_SKIN	0	1	0.057	FALSE	231	217	16	283	0	FALSE	ACH-000812
COLO783_SKIN	NRIP1--AF127936.7	1	10	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	33	0	0.25	1	0.0114	0.1141	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO783_SKIN	0.25	1	0.1255	FALSE	164	806	69	479	0	FALSE	ACH-000812
COLO783_SKIN	PVT1--RP11-667F9.2	2	6	PVT1	12825	chr8:128996450:+	RP11-667F9.2	28754	chr7:64928286:+	ONLY_REF_SPLICE	YES	57	0	0.12	1	0.0228	0.0685	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-667F9.2->chr7:64927984-64928351:+	COLO783_SKIN	0.12	1	0.0913	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	MT-ND4--MT-ATP8	3	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10395	8	0	0.33	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO783_SKIN	0	0.33	0.0456	FALSE	230	198	14	283	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND4--MT-ATP8	3	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10413	8	0	0.33	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO783_SKIN	0	0.33	0.0456	FALSE	230	193	14	283	0	FALSE	ACH-000812
COLO783_SKIN	MT-ND4--MT-ATP8	3	1	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7674	51	0	0.07	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO783_SKIN	0	0.07	0.0456	FALSE	230	193	14	283	0	FALSE	ACH-000812
COLO783_SKIN	TYR--MXI1	3	1	TYR	3538	chr11:88924586:+	MXI1	17518	chr10:111987947:+	ONLY_REF_SPLICE	YES	1339	149	0	0.03	0.0342	0.0114	TYR->chr11:88910620-89028927:+,tyrosinase,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	COLO783_SKIN	0	0.03	0.0456	FALSE	0	4	0	4	0	FALSE	ACH-000812
COLO783_SKIN	AC040977.1--RCAN1	3	0	AC040977.1	2812	chr17:6915944:-	RCAN1	17281	chr21:35890265:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	AC040977.1->chr17:6915928-6917755:-,RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1	COLO783_SKIN	1	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	TANGO2--CECR1	2	4	TANGO2	14823	chr22:20050965:+	CECR1	31458	chr22:17669337:-	ONLY_REF_SPLICE	YES	141	4	0.04	0.6	0.0228	0.0457	TANGO2->chr22:20004537-20053449:+,transport_and_golgi_organization_2_homolog,CECR1->cat_eye_syndrome_chromosome_region,_candidate_1,chr22:17660194-17702879:-	COLO783_SKIN	0.04	0.6	0.0685	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	TANGO2--CECR1	2	3	TANGO2	11861	chr22:20043536:+	CECR1	31458	chr22:17669337:-	ONLY_REF_SPLICE	NO	191	4	0.03	0.56	0.0228	0.0342	TANGO2->chr22:20004537-20053449:+,transport_and_golgi_organization_2_homolog,CECR1->cat_eye_syndrome_chromosome_region,_candidate_1,chr22:17660194-17702879:-	COLO783_SKIN	0.03	0.56	0.057	TRUE	0	0	0	1	0	FALSE	ACH-000812
COLO783_SKIN	CALD1--BPGM	2	1	CALD1	3555	chr7:134464500:+	BPGM	37504	chr7:134343100:+	ONLY_REF_SPLICE	YES	60	73	0.05	0.04	0.0228	0.0114	LOCAL_REARRANGEMENT:+:[64438],CALD1->caldesmon_1,chr7:134429003-134655479:+,BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+	COLO783_SKIN	0.04	0.05	0.0342	TRUE	0	0	0	1	0	FALSE	ACH-000812
COLO783_SKIN	STK4--YWHAB	2	1	STK4	14482	chr20:43629994:+	YWHAB	28745	chr20:43530172:+	ONLY_REF_SPLICE	YES	105	1009	0.03	0	0.0228	0.0114	GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[57942],STK4->Oncogene{Bushman},chr20:43595115-43708600:+,serine/threonine_kinase_4,YWHAB->chr20:43514317-43537173:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_beta	COLO783_SKIN	0	0.03	0.0342	FALSE	0	0	0	2	0	FALSE	ACH-000812
COLO783_SKIN	ATAD3B--MRPL20	2	0	ATAD3B	14283	chr1:1426051:+	MRPL20	22075	chr1:1341266:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	LOCAL_INVERSION:+:-:[64450],ATAD3B->ATPase_family,_AAA_domain_containing_3B,chr1:1407143-1433228:+,MRPL20->chr1:1337288-1342693:-,mitochondrial_ribosomal_protein_L20	COLO783_SKIN	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	KIAA0930--SNX6	2	0	KIAA0930	12969	chr22:45598871:-	SNX6	28156	chr14:35078948:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	KIAA0930->KIAA0930,chr22:45586219-45636650:-,SNX6->chr14:35030300-35099389:-,sorting_nexin_6	COLO783_SKIN	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	MCM4--HARS2	2	0	MCM4	10146	chr8:48883436:+	HARS2	24466	chr5:140076106:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4,HARS2->chr5:140071011-140078889:+,histidyl-tRNA_synthetase_2,_mitochondrial	COLO783_SKIN	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	NDC80--HIF1A	2	0	NDC80	4483	chr18:2577356:+	HIF1A	39781	chr14:62211423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_FI:{Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Cells_-_Transformed_fibroblasts=4,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Lung=1,Artery_-_Coronary=1,Esophagus_-_Muscularis=1},NDC80->NDC80_kinetochore_complex_component,chr18:2571510-2616634:+,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	COLO783_SKIN	1	1	0.0228	TRUE	2	27	1	8	0	FALSE	ACH-000812
COLO783_SKIN	PTPRF--STAG2	2	0	PTPRF	14508	chr1:44054671:+	STAG2	73707	chrX:123227868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F,STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2	COLO783_SKIN	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO783_SKIN	1	1	0.0228	FALSE	93	270	15	244	0	FALSE	ACH-000812
COLO783_SKIN	RPSAP52--HMGA2	2	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	COLO783_SKIN	1	1	0.0228	FALSE	0	59	0	125	0	FALSE	ACH-000812
COLO783_SKIN	XRCC5--AC122136.2	2	0	XRCC5	20768	chr2:217026771:+	AC122136.2	30673	chr2:216734987:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,AC122136.2->chr2:216734646-216735241:+	COLO783_SKIN	1	1	0.0228	TRUE	0	1	0	1	0	TRUE	ACH-000812
COLO783_SKIN	NRIP1--AF127936.7	1	2	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	4	9	0.43	0.25	0.0114	0.0228	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO783_SKIN	0.25	0.43	0.0342	FALSE	25	145	6	90	0	FALSE	ACH-000812
COLO783_SKIN	PTK2B--EXTL3	1	2	PTK2B	10948	chr8:27255305:+	EXTL3	50028	chr8:28570974:+	ONLY_REF_SPLICE	YES	10	63	0.23	0.05	0.0114	0.0228	PTK2B->chr8:27168999-27316903:+,protein_tyrosine_kinase_2_beta,EXTL3->chr8:28457986-28613116:+,exostosin_like_glycosyltransferase_3	COLO783_SKIN	0.05	0.23	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	C7orf63--AC002127.4	1	1	C7orf63	2431	chr7:89884796:+	AC002127.4	34032	chr7:88362879:+	ONLY_REF_SPLICE	NO	5	0	0.29	1	0.0114	0.0114	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},C7orf63->chr7:89874488-89940377:+,AC002127.4->chr7:88339945-88386039:+	COLO783_SKIN	0.29	1	0.0228	TRUE	1	0	0	1	0	TRUE	ACH-000812
COLO783_SKIN	CALD1--BPGM	1	1	CALD1	10797	chr7:134576424:+	BPGM	39851	chr7:134346199:+	ONLY_REF_SPLICE	YES	1116	68	0	0.03	0.0114	0.0114	LOCAL_REARRANGEMENT:+:[64438],CALD1->caldesmon_1,chr7:134429003-134655479:+,BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+	COLO783_SKIN	0	0.03	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000812
COLO783_SKIN	G3BP1--CTB-113P19.4	1	1	G3BP1	3768	chr5:151166276:+	CTB-113P19.4	27827	chr5:151033595:+	ONLY_REF_SPLICE	YES	1255	0	0	1	0.0114	0.0114	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-113P19.4->chr5:151031836-151035010:+	COLO783_SKIN	0	1	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000812
COLO783_SKIN	PLEKHM2--KAZN	1	1	PLEKHM2	2394	chr1:16042838:+	KAZN	26420	chr1:15361245:+	ONLY_REF_SPLICE	YES	162	57	0.01	0.03	0.0114	0.0114	PLEKHM2->chr1:16010827-16061264:+,pleckstrin_homology_and_RUN_domain_containing_M2,KAZN->chr1:14925200-15444539:+,kazrin,_periplakin_interacting_protein	COLO783_SKIN	0.01	0.03	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000812
COLO783_SKIN	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	171	0.5	0.01	0.0114	0.0114	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	COLO783_SKIN	0.01	0.5	0.0228	FALSE	16	356	14	466	0	FALSE	ACH-000812
COLO783_SKIN	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	171	0.33	0.01	0.0114	0.0114	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	COLO783_SKIN	0.01	0.33	0.0228	FALSE	0	48	1	163	0	FALSE	ACH-000812
HOP92_LUNG	EXD3--DPH7	72	3	EXD3	1149	chr9:140317566:-	DPH7	36504	chr9:140470619:-	ONLY_REF_SPLICE	YES	3	56	0.96	0.57	0.8473	0.0353	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7	HOP92_LUNG	0.57	0.96	0.8826	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	TIMM23B--LINC00843	53	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6237	0.2236	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HOP92_LUNG	1	1	0.8473	TRUE	508	994	45	981	0	FALSE	ACH-000825
HOP92_LUNG	PTK2--TRAPPC9	35	18	PTK2	19872	chr8:141828376:-	TRAPPC9	126704	chr8:140744445:-	ONLY_REF_SPLICE	YES	102	33	0.34	0.62	0.4119	0.2118	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	HOP92_LUNG	0.34	0.62	0.6237	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	MT-TA--MT-TC	33	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3883	0.0588	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HOP92_LUNG	1	1	0.4471	FALSE	462	80	0	856	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	33	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	14786	6	0	0.85	0.3883	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.85	0.4001	FALSE	230	193	14	283	0	FALSE	ACH-000825
HOP92_LUNG	TIMM23--RP11-464F9.1	29	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	201	7	0.13	0.82	0.3413	0.0235	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HOP92_LUNG	0.13	0.82	0.3648	TRUE	519	3926	326	965	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND3--MT-ATP8	19	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2236	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	1	1	0.2236	FALSE	351	233	23	137	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	16	7	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	7767	554	0	0.04	0.1883	0.0824	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.04	0.2707	FALSE	231	215	16	283	0	FALSE	ACH-000825
HOP92_LUNG	EXD3--DPH7	17	0	EXD3	1149	chr9:140317566:-	DPH7	39804	chr9:140459606:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2001	0	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7	HOP92_LUNG	1	1	0.2001	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	HSD17B11--SPARCL1	16	3	HSD17B11	1526	chr4:88312013:-	SPARCL1	20117	chr4:88420737:-	ONLY_REF_SPLICE	YES	213	0	0.08	1	0.1883	0.0353	LOCAL_REARRANGEMENT:-:[81949],HSD17B11->chr4:88257762-88312538:-,hydroxysteroid_(17-beta)_dehydrogenase_11,SPARCL1->SPARC_like_1,chr4:88394487-88452213:-	HOP92_LUNG	0.08	1	0.2236	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	13	6	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17816	8	0	0.7	0.153	0.0706	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.7	0.2236	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	13	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14937	8	0	0.64	0.153	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.64	0.1648	FALSE	230	198	14	283	0	FALSE	ACH-000825
HOP92_LUNG	ZNF654--HMGB2	12	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1412	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HOP92_LUNG	1	1	0.1412	TRUE	0	0	0	518	0	FALSE	ACH-000825
HOP92_LUNG	DNM2--SMARCA4	9	8	DNM2	4114	chr19:10870487:+	SMARCA4	46540	chr19:11094800:+	ONLY_REF_SPLICE	YES	175	114	0.09	0.13	0.1059	0.0941	DNM2->chr19:10828755-10944164:+,dynamin_2,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	HOP92_LUNG	0.09	0.13	0.2	TRUE	0	1	0	1	1	TRUE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	10	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14786	8	0	0.58	0.1177	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.58	0.1295	FALSE	230	193	14	283	0	FALSE	ACH-000825
HOP92_LUNG	RP11-680G10.1--GSE1	9	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.88	0.1059	0.0588	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HOP92_LUNG	0.88	1	0.1647	TRUE	458	1351	185	561	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND6--MT-TE	10	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1177	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HOP92_LUNG	1	1	0.1177	FALSE	499	1288	110	792	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND6--MT-TE	6	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0706	0.1177	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HOP92_LUNG	0.89	1	0.1883	FALSE	499	1288	110	792	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	7	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19623	0	0	1	0.0824	0.0588	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	1	0.1412	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	7	5	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	17445	1562	0	0.01	0.0824	0.0588	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.01	0.1412	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	RP11-96H19.1--RP11-446N19.1	7	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.92	0.92	0.0824	0.0588	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HOP92_LUNG	0.92	0.92	0.1412	FALSE	515	4851	409	746	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	6	8	MT-ND4	2283	chrM:12042:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	38	56	0.27	0.2	0.0706	0.0941	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0.2	0.27	0.1647	FALSE	213	207	15	279	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	7	3	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	19122	0	0	1	0.0824	0.0353	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	1	0.1177	FALSE	231	205	14	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	7	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17534	8	0	0.56	0.0824	0.0353	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.56	0.1177	FALSE	231	205	14	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	6	5	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	17816	901	0	0.01	0.0706	0.0588	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.01	0.1294	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	RP11-307P5.1--SASH1	7	1	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	9	1	0.47	0.0824	0.0118	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HOP92_LUNG	0.47	1	0.0942	TRUE	0	2	0	37	2	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	5	8	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15377	56	0	0.19	0.0588	0.0941	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.19	0.1529	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	VIM--TMSB4X	7	0	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0824	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HOP92_LUNG	1	1	0.0824	TRUE	0	0	0	15	0	TRUE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	5	6	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16623	56	0	0.16	0.0588	0.0706	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.16	0.1294	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-TA--MT-TC	5	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0588	0.0706	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HOP92_LUNG	1	1	0.1294	FALSE	462	80	0	856	0	FALSE	ACH-000825
HOP92_LUNG	ZNF444--TSGA10	6	2	ZNF444	13634	chr19:56671381:+	TSGA10	38867	chr2:99681587:-	INCL_NON_REF_SPLICE	YES	16	0	0.33	1	0.0706	0.0235	ZNF444->chr19:56643968-56672262:+,zinc_finger_protein_444,TSGA10->chr2:99613724-99771427:-,testis_specific_10	HOP92_LUNG	0.33	1	0.0941	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	RP11-353N4.6--SEC22B	6	1	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	71	191	0.09	0.04	0.0706	0.0118	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HOP92_LUNG	0.04	0.09	0.0824	TRUE	49	42	7	43	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	5	4	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	20842	554	0	0.02	0.0588	0.0471	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.02	0.1059	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND6--MT-TE	3	12	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0353	0.1412	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HOP92_LUNG	0.88	1	0.1765	FALSE	499	1288	110	792	0	FALSE	ACH-000825
HOP92_LUNG	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0706	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HOP92_LUNG	1	1	0.0706	FALSE	462	80	0	856	0	FALSE	ACH-000825
HOP92_LUNG	EXD3--DPH7	5	3	EXD3	1149	chr9:140317566:-	DPH7	36269	chr9:140470854:-	ONLY_REF_SPLICE	YES	3	54	0.73	0.13	0.0588	0.0353	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7	HOP92_LUNG	0.13	0.73	0.0941	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	4	7	MT-ND4	2098	chrM:11857:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	NO	12236	554	0	0.02	0.0471	0.0824	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.02	0.1295	FALSE	231	215	16	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	4	6	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	17749	0	0	1	0.0471	0.0706	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	1	0.1177	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	4	6	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	17355	0	0	1	0.0471	0.0706	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	1	0.1177	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-TA--MT-TC	4	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0.0706	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HOP92_LUNG	1	1	0.1177	FALSE	462	80	0	856	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	5	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	14927	56	0	0.1	0.0588	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.1	0.0706	FALSE	230	198	14	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	4	5	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	17682	972	0	0.01	0.0471	0.0588	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.01	0.1059	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	3	9	MT-ND4	2250	chrM:12009:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	NO	2591	0	0	1	0.0353	0.1059	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	1	0.1412	FALSE	216	209	16	281	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	4	5	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20258	56	0	0.14	0.0471	0.0588	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.14	0.1059	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	5	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	15435	0	0	1	0.0588	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	1	0.0706	FALSE	231	204	14	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	2122	chrM:11881:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11184	8	0	0.58	0.0353	0.0941	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.58	0.1294	FALSE	231	215	16	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0588	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HOP92_LUNG	1	1	0.0588	FALSE	499	1288	110	792	0	FALSE	ACH-000825
HOP92_LUNG	RP11-466I1.1--EIF3M	5	0	RP11-466I1.1	2424	chr11:29233312:+	EIF3M	9189	chr11:32608558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0588	0	RP11-466I1.1->chr11:29181503-29288281:+,EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M	HOP92_LUNG	1	1	0.0588	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	16784	0	0	1	0.0353	0.0824	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	1	0.1177	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	CTD-2337A12.1--CAST	4	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	116	1	0.05	0.0471	0.0235	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HOP92_LUNG	0.05	1	0.0706	TRUE	347	1186	183	220	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1566	chrM:11325:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	20439	56	0	0.14	0.0353	0.0706	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.14	0.1059	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	16580	1871	0	0	0.0471	0.0235	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0	0.0706	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	17573	0	0	1	0.0353	0.0706	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	1	0.1059	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1534	chrM:11293:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	21393	0	0	1	0.0353	0.0706	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	1	0.1059	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	RP11-120D5.1--MID1	4	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	105	0.55	0.05	0.0471	0.0235	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HOP92_LUNG	0.05	0.55	0.0706	FALSE	16	356	14	466	0	FALSE	ACH-000825
HOP92_LUNG	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	28	1	0.18	0.0471	0.0235	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HOP92_LUNG	0.18	1	0.0706	TRUE	465	1949	224	605	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	19636	0	0	1	0.0353	0.0588	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	1	0.0941	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	16833	843	0	0.01	0.0353	0.0588	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.01	0.0941	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	4	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14572	8	0	0.38	0.0471	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.38	0.0589	FALSE	230	193	14	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	21087	791	0	0.01	0.0353	0.0588	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.01	0.0941	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	19549	0	0	1	0.0353	0.0588	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	1	0.0941	FALSE	231	217	16	283	0	FALSE	ACH-000825
HOP92_LUNG	ATP6V0C--MT-CO2	4	0	ATP6V0C	2901	chr16:2569372:+	MT-CO2	6980	chrM:7817:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	ATP6V0C->ATPase_H+_transporting_V0_subunit_c,chr16:2563871-2570219:+,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HOP92_LUNG	1	1	0.0471	FALSE	0	0	0	9	0	FALSE	ACH-000825
HOP92_LUNG	DNM2--SMARCA4	2	8	DNM2	4114	chr19:10870487:+	SMARCA4	46537	chr19:11094797:+	ONLY_REF_SPLICE	YES	175	118	0.05	0.08	0.0235	0.0941	DNM2->chr19:10828755-10944164:+,dynamin_2,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	HOP92_LUNG	0.05	0.08	0.1176	TRUE	0	1	0	1	1	FALSE	ACH-000825
HOP92_LUNG	MT-ND3--MT-CO2	4	0	MT-ND3	1059	chrM:10117:+	MT-CO2	4502	chrM:7741:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	LOCAL_REARRANGEMENT:+:[1790],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HOP92_LUNG	1	1	0.0471	FALSE	0	23	1	2	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	1	1	0.0471	FALSE	230	193	14	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1164	chrM:10923:+	MT-ATP8	5578	chrM:8565:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	1	1	0.0471	FALSE	230	193	14	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND6--MT-TE	3	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0.0471	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HOP92_LUNG	1	1	0.0824	FALSE	499	1288	110	792	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HOP92_LUNG	1	1	0.0471	FALSE	499	1288	110	792	0	FALSE	ACH-000825
HOP92_LUNG	VIM--TMSB4X	4	0	VIM	2162	chr10:17271419:+	TMSB4X	13357	chrX:12994379:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HOP92_LUNG	1	1	0.0471	TRUE	0	0	0	15	0	TRUE	ACH-000825
HOP92_LUNG	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0235	0.0706	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HOP92_LUNG	0.89	1	0.0941	FALSE	467	2173	244	435	0	FALSE	ACH-000825
HOP92_LUNG	DNM2--SMARCA4	1	9	DNM2	4114	chr19:10870487:+	SMARCA4	44820	chr19:11091453:+	ONLY_REF_SPLICE	YES	175	124	0.05	0.07	0.0118	0.1059	DNM2->chr19:10828755-10944164:+,dynamin_2,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	HOP92_LUNG	0.05	0.07	0.1177	TRUE	0	1	0	1	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND3--MT-ATP8	3	1	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	82	8	0.05	0.33	0.0353	0.0118	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0.05	0.33	0.0471	FALSE	351	233	23	137	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	15428	0	0	1	0.0353	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	1	0.0471	FALSE	231	204	14	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14937	56	0	0.07	0.0353	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0.07	0.0471	FALSE	230	198	14	283	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	16003	1915	0	0	0.0353	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	0	0	0.0471	FALSE	231	204	14	283	0	FALSE	ACH-000825
HOP92_LUNG	RP11-123O10.4--GRIP1	3	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	9	1	0.31	0.0353	0.0118	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HOP92_LUNG	0.31	1	0.0471	FALSE	416	2512	207	587	0	FALSE	ACH-000825
HOP92_LUNG	SERPINE1--MT-ND4	3	1	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	1915	19125	0	0	0.0353	0.0118	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HOP92_LUNG	0	0	0.0471	FALSE	1	0	0	29	0	FALSE	ACH-000825
HOP92_LUNG	EIF1--RPS28	3	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HOP92_LUNG	1	1	0.0353	TRUE	0	0	0	81	0	FALSE	ACH-000825
HOP92_LUNG	EIF1--RPS28	3	0	EIF1	1089	chr17:39845225:+	RPS28	8128	chr19:8386385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HOP92_LUNG	1	1	0.0353	TRUE	0	0	0	81	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND3--MT-ATP8	3	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4495	chrM:8514:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	1	1	0.0353	FALSE	351	233	23	137	0	FALSE	ACH-000825
HOP92_LUNG	MT-ND3--MT-ATP8	3	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP92_LUNG	1	1	0.0353	FALSE	351	233	23	137	0	FALSE	ACH-000825
HOP92_LUNG	RPSAP52--HMGA2	3	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0353	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HOP92_LUNG	1	1	0.0353	FALSE	0	59	0	125	0	FALSE	ACH-000825
HOP92_LUNG	INPP4B--RXFP1	2	3	INPP4B	37503	chr4:143114240:-	RXFP1	67559	chr4:159493850:+	ONLY_REF_SPLICE	YES	23	0	0.18	1	0.0235	0.0353	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	HOP92_LUNG	0.18	1	0.0588	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	SLC16A12--LIPA	2	3	SLC16A12	5062	chr10:91222136:-	LIPA	18335	chr10:91172679:-	ONLY_REF_SPLICE	YES	16	0	0.24	1	0.0235	0.0353	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	HOP92_LUNG	0.24	1	0.0588	FALSE	0	24	3	7	0	FALSE	ACH-000825
HOP92_LUNG	SLC16A12--LIPA	2	3	SLC16A12	5062	chr10:91222136:-	LIPA	29664	chr10:91007406:-	ONLY_REF_SPLICE	YES	16	145	0.24	0.03	0.0235	0.0353	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	HOP92_LUNG	0.03	0.24	0.0588	FALSE	12	128	21	13	0	FALSE	ACH-000825
HOP92_LUNG	SLC16A12--LIPA	2	3	SLC16A12	5062	chr10:91222136:-	LIPA	22973	chr10:91074416:-	ONLY_REF_SPLICE	YES	16	12	0.24	0.29	0.0235	0.0353	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	HOP92_LUNG	0.24	0.29	0.0588	FALSE	1	78	7	7	0	FALSE	ACH-000825
HOP92_LUNG	GALNT9--NOC4L	2	1	GALNT9	2606	chr12:132862836:-	NOC4L	28278	chr12:132635803:+	ONLY_REF_SPLICE	YES	18	43	0.14	0.07	0.0235	0.0118	GTEx_FI:{Brain=[count:36=pct:5.5]},GTEx_v2:{count=51;pct=0.59%;dist=Brain_-_Cerebellum=14,Brain_-_Cerebellar_Hemisphere=12,Brain_-_Cortex=8,Brain_-_Frontal_Cortex_(BA9)=6,Brain_-_Hippocampus=4,Brain_-_Anterior_cingulate_cortex_(BA24)=4,Brain_-_Hypothalamus=1,Brain_-_Substantia_nigra=1,Brain_-_Amygdala=1},LOCAL_INVERSION:-:+:[43911],GALNT9->chr12:132680924-132905935:-,polypeptide_N-acetylgalactosaminyltransferase_9,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	HOP92_LUNG	0.07	0.14	0.0353	TRUE	13	8	0	3	0	FALSE	ACH-000825
HOP92_LUNG	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.33	1	0.0235	0.0118	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HOP92_LUNG	0.33	1	0.0353	FALSE	164	806	69	479	0	FALSE	ACH-000825
HOP92_LUNG	RP11-120D5.1--MID1	2	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	105	0.43	0.03	0.0235	0.0118	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HOP92_LUNG	0.03	0.43	0.0353	FALSE	0	48	1	163	0	FALSE	ACH-000825
HOP92_LUNG	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	1	0	0.86	1	0.0118	0.0588	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HOP92_LUNG	0.86	1	0.0706	FALSE	275	511	55	178	0	FALSE	ACH-000825
HOP92_LUNG	TROVE2--LINC01031	2	1	TROVE2	6697	chr1:193046180:+	LINC01031	23715	chr1:193334778:+	ONLY_REF_SPLICE	NO	15	0	0.17	1	0.0235	0.0118	TROVE2->TROVE_domain_family_member_2,chr1:193028552-193060907:+,LINC01031->chr1:193273875-193335083:+,long_intergenic_non-protein_coding_RNA_1031	HOP92_LUNG	0.17	1	0.0353	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	CTD-2066L21.3--ZFR	2	0	CTD-2066L21.3	4766	chr5:33023181:-	ZFR	29374	chr5:32364381:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	CTD-2066L21.3->chr5:32925745-33298016:-,ZFR->chr5:32354456-32444867:-,zinc_finger_RNA_binding_protein	HOP92_LUNG	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	INPP4B--RXFP1	1	4	INPP4B	37503	chr4:143114240:-	RXFP1	65870	chr4:159464870:+	ONLY_REF_SPLICE	NO	23	0	0.18	1	0.0118	0.0471	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	HOP92_LUNG	0.18	1	0.0589	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HOP92_LUNG	1	1	0.0235	FALSE	292	1546	117	613	0	FALSE	ACH-000825
HOP92_LUNG	NUBPL--CHRM2	2	0	NUBPL	12822	chr14:32142780:+	CHRM2	34025	chr7:136635750:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like,CHRM2->cholinergic_receptor_muscarinic_2,chr7:136553416-136705002:+	HOP92_LUNG	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	RP11-120D5.1--MID1	1	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	5	54	0.5	0.08	0.0118	0.0471	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HOP92_LUNG	0.08	0.5	0.0589	FALSE	0	23	1	67	0	FALSE	ACH-000825
HOP92_LUNG	SCML1--MAOA	2	0	SCML1	4745	chrX:17764218:+	MAOA	15824	chrX:43542761:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	SCML1->chrX:17755588-17773105:+,sex_comb_on_midleg-like_1_(Drosophila),MAOA->chrX:43515467-43606068:+,monoamine_oxidase_A	HOP92_LUNG	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	TULP4--RP11-732M18.3	2	0	TULP4	2609	chr6:158735300:+	RP11-732M18.3	28124	chr6:158703295:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	HOP92_LUNG	1	1	0.0235	TRUE	121	131	5	12	0	FALSE	ACH-000825
HOP92_LUNG	HSD17B11--SPARCL1	1	3	HSD17B11	1526	chr4:88312013:-	SPARCL1	17039	chr4:88450253:-	ONLY_REF_SPLICE	NO	213	0	0.02	1	0.0118	0.0353	LOCAL_REARRANGEMENT:-:[81949],HSD17B11->chr4:88257762-88312538:-,hydroxysteroid_(17-beta)_dehydrogenase_11,SPARCL1->SPARC_like_1,chr4:88394487-88452213:-	HOP92_LUNG	0.02	1	0.0471	TRUE	0	0	0	1	0	FALSE	ACH-000825
HOP92_LUNG	GXYLT1--TINAG	1	2	GXYLT1	4845	chr12:42503368:-	TINAG	28683	chr6:54245324:+	ONLY_REF_SPLICE	YES	30	0	0.09	1	0.0118	0.0235	GXYLT1->chr12:42475647-42538681:-,glucoside_xylosyltransferase_1,TINAG->chr6:54172657-54254950:+,tubulointerstitial_nephritis_antigen	HOP92_LUNG	0.09	1	0.0353	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	SFI1--CTA-221G9.11	1	2	SFI1	10500	chr22:31946334:+	CTA-221G9.11	45061	chr22:25498885:-	ONLY_REF_SPLICE	YES	24	0	0.11	1	0.0118	0.0235	SFI1->SFI1_centrin_binding_protein,chr22:31884674-32014572:+,CTA-221G9.11->chr22:25498407-25508659:-	HOP92_LUNG	0.11	1	0.0353	TRUE	0	0	0	1	0	TRUE	ACH-000825
HOP92_LUNG	CTD-2152M20.2--GOLPH3	1	1	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	61	1	0.03	0.0118	0.0118	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	HOP92_LUNG	0.03	1	0.0236	TRUE	10	26	2	24	0	FALSE	ACH-000825
HOP92_LUNG	DNAJC25--UGCG	1	1	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	123	336	0.02	0.01	0.0118	0.0118	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	HOP92_LUNG	0.01	0.02	0.0236	FALSE	50	73	10	50	0	FALSE	ACH-000825
HOP92_LUNG	GALNT9--NOC4L	1	1	GALNT9	2606	chr12:132862836:-	NOC4L	28001	chr12:132635526:+	ONLY_REF_SPLICE	NO	18	41	0.1	0.05	0.0118	0.0118	GTEx_FI:{Brain=[count:36=pct:5.5]},GTEx_v2:{count=51;pct=0.59%;dist=Brain_-_Cerebellum=14,Brain_-_Cerebellar_Hemisphere=12,Brain_-_Cortex=8,Brain_-_Frontal_Cortex_(BA9)=6,Brain_-_Hippocampus=4,Brain_-_Anterior_cingulate_cortex_(BA24)=4,Brain_-_Hypothalamus=1,Brain_-_Substantia_nigra=1,Brain_-_Amygdala=1},LOCAL_INVERSION:-:+:[43911],GALNT9->chr12:132680924-132905935:-,polypeptide_N-acetylgalactosaminyltransferase_9,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	HOP92_LUNG	0.05	0.1	0.0236	TRUE	13	8	0	3	0	FALSE	ACH-000825
HOP92_LUNG	PHLDB2--PVRL3	1	1	PHLDB2	1207	chr3:111451550:+	PVRL3	54287	chr3:110863746:+	ONLY_REF_SPLICE	YES	69	29	0.03	0.06	0.0118	0.0118	PHLDB2->chr3:111451344-111695364:+,pleckstrin_homology_like_domain_family_B_member_2,PVRL3->chr3:110788918-110994410:+	HOP92_LUNG	0.03	0.06	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000825
HOP92_LUNG	PTPRF--RPLP0	1	1	PTPRF	29072	chr1:44083239:+	RPLP0	38315	chr12:120638900:-	ONLY_REF_SPLICE	NO	350	0	0.01	1	0.0118	0.0118	PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F,RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0	HOP92_LUNG	0.01	1	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000825
HOP92_LUNG	RPL30--LAPTM4B	1	1	RPL30	2527	chr8:99057171:-	LAPTM4B	17876	chr8:98863625:+	ONLY_REF_SPLICE	NO	3004	800	0	0	0.0118	0.0118	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	HOP92_LUNG	0	0	0.0236	FALSE	0	1	0	5	0	FALSE	ACH-000825
HOP92_LUNG	SIPA1L3--SPINT2	1	1	SIPA1L3	4162	chr19:38519796:+	SPINT2	42588	chr19:38774267:+	ONLY_REF_SPLICE	YES	31	6	0.06	0.25	0.0118	0.0118	NEIGHBORS[35663],SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2	HOP92_LUNG	0.06	0.25	0.0236	FALSE	0	1	0	2	0	FALSE	ACH-000825
RCM1_LARGE_INTESTINE	MT-TA--MT-TN	214	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.1062	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RCM1_LARGE_INTESTINE	1	1	2.1062	FALSE	369	2501	205	193	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TC	143	37	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4074	0.3642	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RCM1_LARGE_INTESTINE	1	1	1.7716	FALSE	462	80	0	856	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	TIMM23B--LINC00843	90	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8858	0.1772	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RCM1_LARGE_INTESTINE	1	1	1.063	TRUE	508	994	45	981	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TN	41	117	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4035	1.1515	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RCM1_LARGE_INTESTINE	1	1	1.555	FALSE	369	2501	205	193	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	TIMM23--RP11-464F9.1	55	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	94	8	0.37	0.88	0.5413	0.0098	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RCM1_LARGE_INTESTINE	0.37	0.88	0.5511	TRUE	519	3926	326	965	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND6--MT-TE	50	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4921	0.0197	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCM1_LARGE_INTESTINE	1	1	0.5118	FALSE	499	1288	110	792	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TN	25	83	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2461	0.8169	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RCM1_LARGE_INTESTINE	1	1	1.063	FALSE	369	2501	205	193	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TN	35	28	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3445	0.2756	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RCM1_LARGE_INTESTINE	1	1	0.6201	FALSE	369	2501	205	193	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	ZNF654--HMGB2	42	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4134	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RCM1_LARGE_INTESTINE	1	1	0.4134	TRUE	0	0	0	518	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	18	93	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	6	11	0.95	0.91	0.1772	0.9153	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.91	0.95	1.0925	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	14	101	MT-CO3	1666	chrM:9872:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	11	0.99	0.91	0.1378	0.9941	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.91	0.99	1.1319	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MBNL2--RP11-248E9.5	35	8	MBNL2	3876	chr13:97928663:+	RP11-248E9.5	18279	chr12:88189512:+	INCL_NON_REF_SPLICE	YES	107	0	0.29	1	0.3445	0.0787	MBNL2->chr13:97873688-98046374:+,muscleblind_like_splicing_regulator_2,RP11-248E9.5->chr12:88189510-88195805:+	RCM1_LARGE_INTESTINE	0.29	1	0.4232	TRUE	0	0	0	1	0	TRUE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND5--MT-ATP8	29	8	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5042	14	0.01	0.73	0.2854	0.0787	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0.01	0.73	0.3641	FALSE	43	37	8	105	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	107	MT-CO3	1222	chrM:9428:+	MT-ATP6	4744	chrM:8486:+	INCL_NON_REF_SPLICE	YES	13	0	0.89	1	0.0295	1.0531	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.89	1	1.0826	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	107	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	13	0	0.89	1	0.0295	1.0531	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.89	1	1.0826	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	7	91	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	4	3	0.96	0.97	0.0689	0.8956	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.96	0.97	0.9645	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TN	14	58	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1378	0.5708	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RCM1_LARGE_INTESTINE	1	1	0.7086	FALSE	369	2501	205	193	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TC	20	32	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1968	0.3149	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RCM1_LARGE_INTESTINE	1	1	0.5117	FALSE	462	80	0	856	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	98	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	17	13	0.86	0.89	0.0295	0.9645	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.86	0.89	0.994	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND6--MT-TE	25	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.2461	0.0984	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCM1_LARGE_INTESTINE	0.92	1	0.3445	FALSE	499	1288	110	792	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TN	17	42	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1673	0.4134	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RCM1_LARGE_INTESTINE	1	1	0.5807	FALSE	369	2501	205	193	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	97	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	17	7	0.85	0.93	0.0295	0.9547	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.85	0.93	0.9842	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND5--MT-ATP8	23	15	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	6	3	0.86	0.93	0.2264	0.1476	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0.86	0.93	0.374	FALSE	43	37	8	105	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	90	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	78	0.99	0.55	0.0394	0.8858	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.55	0.99	0.9252	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TN	26	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2559	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RCM1_LARGE_INTESTINE	1	1	0.2559	FALSE	369	2501	205	193	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	90	MT-CO3	1090	chrM:9296:+	MT-ATP6	5050	chrM:8792:+	INCL_NON_REF_SPLICE	YES	1	81	0.99	0.53	0.0295	0.8858	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.53	0.99	0.9153	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	SLC1A5--MT-ND4L	25	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2461	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RCM1_LARGE_INTESTINE	1	1	0.2461	FALSE	0	0	0	189	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	6	72	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	1	1	0.99	0.99	0.0591	0.7086	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.99	0.99	0.7677	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	23	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	16116	11	0	0.69	0.2264	0.0098	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.69	0.2362	FALSE	230	193	14	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	73	MT-CO3	1147	chrM:9353:+	MT-ATP6	5385	chrM:9127:+	INCL_NON_REF_SPLICE	YES	8	1	0.9	0.99	0.0295	0.7185	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.9	0.99	0.748	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	19	8	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19775	16	0	0.63	0.187	0.0787	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.63	0.2657	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TN	21	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2067	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RCM1_LARGE_INTESTINE	1	1	0.2067	FALSE	369	2501	205	193	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TN	8	51	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0787	0.502	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RCM1_LARGE_INTESTINE	1	1	0.5807	FALSE	369	2501	205	193	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND5--MT-ATP8	19	5	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6671	42	0	0.36	0.187	0.0492	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.36	0.2362	FALSE	43	37	8	105	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MID1--YIPF6	16	15	MID1	7932	chrX:10534928:-	YIPF6	27545	chrX:67731691:+	ONLY_REF_SPLICE	YES	6	33	0.84	0.48	0.1575	0.1476	{Klijn_CCL:Colo-Rectal=1},MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+	RCM1_LARGE_INTESTINE	0.48	0.84	0.3051	TRUE	0	0	0	1	0	TRUE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND6--MT-TE	18	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1772	0.0394	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCM1_LARGE_INTESTINE	1	1	0.2166	FALSE	499	1288	110	792	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND6--MT-TE	15	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1476	0.0984	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCM1_LARGE_INTESTINE	1	1	0.246	FALSE	499	1288	110	792	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND5--MT-ATP8	13	17	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.86	0.1279	0.1673	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0.86	1	0.2952	FALSE	43	37	8	105	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	16	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16021	16	0	0.52	0.1575	0.0098	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.52	0.1673	FALSE	230	198	14	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TN	16	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1575	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RCM1_LARGE_INTESTINE	1	1	0.1575	FALSE	369	2501	205	193	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	51	MT-CO3	1033	chrM:9239:+	MT-ATP6	4768	chrM:8510:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0.502	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	1	1	0.5315	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	15	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18419	16	0	0.53	0.1476	0.0295	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.53	0.1771	FALSE	231	205	14	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	40	MT-CO3	1020	chrM:9226:+	MT-ATP6	5206	chrM:8948:+	INCL_NON_REF_SPLICE	YES	0	73	1	0.38	0.0492	0.3937	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.38	1	0.4429	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	C15orf57--CBX3	12	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	45	20	0.33	0.52	0.1181	0.0984	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RCM1_LARGE_INTESTINE	0.33	0.52	0.2165	TRUE	267	562	48	632	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TC	3	46	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0.4527	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RCM1_LARGE_INTESTINE	1	1	0.4822	FALSE	462	80	0	856	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TC	13	4	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1279	0.0394	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RCM1_LARGE_INTESTINE	1	1	0.1673	FALSE	462	80	0	856	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TN	14	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1378	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RCM1_LARGE_INTESTINE	1	1	0.1378	FALSE	369	2501	205	193	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	42	MT-CO3	1023	chrM:9229:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	NO	0	20	1	0.69	0.0295	0.4134	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.69	1	0.4429	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	40	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	11	1	0.8	0.0295	0.3937	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.8	1	0.4232	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	31	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	1	0.95	0.97	0.0492	0.3051	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.95	0.97	0.3543	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TC	3	39	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0.3838	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RCM1_LARGE_INTESTINE	1	1	0.4133	FALSE	462	80	0	856	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	36	MT-CO3	1092	chrM:9298:+	MT-ATP6	5414	chrM:9156:+	INCL_NON_REF_SPLICE	YES	1	1	0.97	0.97	0.0295	0.3543	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.97	0.97	0.3838	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TC	4	32	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.3149	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RCM1_LARGE_INTESTINE	1	1	0.3543	FALSE	462	80	0	856	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	VTI1A--RP11-57H14.3	12	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1181	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	RCM1_LARGE_INTESTINE	1	1	0.1181	FALSE	272	151	14	158	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	11	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	8	1	0.64	0.93	0.1083	0.0295	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.64	0.93	0.1378	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	11	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1083	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	1	1	0.1083	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	RP3-368A4.5--FTX	8	12	RP3-368A4.5	1216	chrX:73461768:-	FTX	20752	chrX:73251675:-	ONLY_REF_SPLICE	YES	47	10	0.3	0.67	0.0787	0.1181	NEIGHBORS_OVERLAP:-:-:[41919],RP3-368A4.5->chrX:73420064-73461983:-,FTX->FTX_transcript,_XIST_regulator_(non-protein_coding),chrX:73183790-73513409:-	RCM1_LARGE_INTESTINE	0.3	0.67	0.1968	FALSE	0	4	0	2	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	7	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19558	4	0	0.8	0.0886	0.0689	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.8	0.1575	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	10	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	19757	0	0	1	0.0787	0.0984	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	1	0.1771	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	APC--KCNN2	10	1	APC	19284	chr5:112164669:+	KCNN2	41045	chr5:113798746:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0984	0.0098	{Klijn_CCL:Colo-Rectal=1},APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,KCNN2->chr5:113696642-113832337:+,potassium_calcium-activated_channel_subfamily_N_member_2	RCM1_LARGE_INTESTINE	1	1	0.1082	TRUE	0	0	0	1	0	TRUE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	13	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3232	44	0.01	0.31	0.0689	0.1279	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0.01	0.31	0.1968	FALSE	216	209	16	281	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	10	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0984	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	1	1	0.0984	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	APC--KCNN2	9	3	APC	21481	chr5:112170862:+	KCNN2	41045	chr5:113798746:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0886	0.0295	{Klijn_CCL:Colo-Rectal=1},APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,KCNN2->chr5:113696642-113832337:+,potassium_calcium-activated_channel_subfamily_N_member_2	RCM1_LARGE_INTESTINE	0.92	1	0.1181	TRUE	0	0	0	1	0	TRUE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16198	44	0	0.19	0.0886	0.0098	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.19	0.0984	FALSE	230	198	14	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	17	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	19650	0	0	1	0.0492	0.1673	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	1	0.2165	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND6--MT-TE	6	13	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.0591	0.1279	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCM1_LARGE_INTESTINE	0.86	1	0.187	FALSE	499	1288	110	792	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	SCARB1--UBC	9	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	142	118	0.07	0.08	0.0886	0.0098	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	RCM1_LARGE_INTESTINE	0.07	0.08	0.0984	TRUE	55	66	6	101	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	24	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	4	1	0.87	0.96	0.0295	0.2362	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.87	0.96	0.2657	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	12	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	19520	0	0	1	0.0591	0.1181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	1	0.1772	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	16	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	1	1	0.95	0.95	0.0492	0.1575	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0.95	0.95	0.2067	FALSE	209	205	15	279	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	RP11-120D5.1--MID1	8	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	11	0.62	0.48	0.0787	0.0197	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RCM1_LARGE_INTESTINE	0.48	0.62	0.0984	FALSE	16	356	14	466	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	13	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	6	1	0.75	0.95	0.0492	0.1279	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.75	0.95	0.1771	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	13	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18375	44	0	0.29	0.0492	0.1279	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.29	0.1771	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND5--MT-ATP8	5	13	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	4325	3	0	0.86	0.0492	0.1279	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.86	0.1771	FALSE	43	37	8	105	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	NRIP1--AF127936.7	8	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0787	0.0098	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RCM1_LARGE_INTESTINE	0.9	1	0.0885	FALSE	292	1546	117	613	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	SLC1A5--MT-ND4L	8	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1602	0	0.01	1	0.0787	0.0098	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RCM1_LARGE_INTESTINE	0.01	1	0.0885	FALSE	0	0	0	189	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	10	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	19583	8	0	0.65	0.0492	0.0984	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.65	0.1476	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	RP3-368A4.5--FTX	4	14	RP3-368A4.5	1216	chrX:73461768:-	FTX	19525	chrX:73289419:-	ONLY_REF_SPLICE	NO	47	10	0.28	0.64	0.0394	0.1378	NEIGHBORS_OVERLAP:-:-:[41919],RP3-368A4.5->chrX:73420064-73461983:-,FTX->FTX_transcript,_XIST_regulator_(non-protein_coding),chrX:73183790-73513409:-	RCM1_LARGE_INTESTINE	0.28	0.64	0.1772	FALSE	0	3	0	2	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	13	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17878	44	0	0.28	0.0394	0.1279	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.28	0.1673	FALSE	231	215	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	13	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1	16	0.94	0.52	0.0394	0.1279	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0.52	0.94	0.1673	FALSE	209	205	15	279	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	13	MT-ND4	1818	chrM:11577:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	19386	0	0	1	0.0394	0.1279	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	1	0.1673	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND5--MT-ATP8	4	13	MT-ND5	2247	chrM:13583:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	5026	5	0	0.77	0.0394	0.1279	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.77	0.1673	FALSE	43	37	8	105	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	AC104389.28--HBG1	6	4	AC104389.28	3440	chr11:5367003:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	15	0	0.4	1	0.0591	0.0394	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	RCM1_LARGE_INTESTINE	0.4	1	0.0985	FALSE	0	0	0	7	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	8	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	13	1	0.5	0.93	0.0492	0.0787	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.5	0.93	0.1279	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	4	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	20061	8	0	0.56	0.0591	0.0394	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.56	0.0985	FALSE	231	205	14	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	7	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	6	1	0.67	0.92	0.0492	0.0689	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCM1_LARGE_INTESTINE	0.67	0.92	0.1181	FALSE	189	492	56	216	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	19775	745	0	0.02	0.0492	0.0689	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.02	0.1181	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	15	MT-ND4	2295	chrM:12054:+	MT-ATP8	5453	chrM:8440:+	INCL_NON_REF_SPLICE	YES	13	5	0.58	0.78	0.0295	0.1476	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0.58	0.78	0.1771	FALSE	213	207	15	279	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	7	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	23217	44	0	0.21	0.0492	0.0689	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.21	0.1181	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	7	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	19627	1397	0	0.01	0.0492	0.0689	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.01	0.1181	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	ITGB4--MT-ND4L	6	2	ITGB4	15946	chr17:73738716:+	MT-ND4L	31012	chrM:10471:+	INCL_NON_REF_SPLICE	YES	848	0	0.01	1	0.0591	0.0197	ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RCM1_LARGE_INTESTINE	0.01	1	0.0788	FALSE	0	0	0	2	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	10	MT-ND4	1812	chrM:11571:+	MT-ATP8	5458	chrM:8445:+	INCL_NON_REF_SPLICE	YES	19653	7	0	0.67	0.0394	0.0984	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.67	0.1378	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	6	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	21026	4	0	0.73	0.0492	0.0591	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.73	0.1083	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND6--MT-TE	4	10	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.82	1	0.0394	0.0984	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCM1_LARGE_INTESTINE	0.82	1	0.1378	FALSE	499	1288	110	792	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	13	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	19923	3	0	0.84	0.0295	0.1279	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.84	0.1574	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	13	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19802	4	0	0.8	0.0295	0.1279	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.8	0.1574	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	17148	1707	0	0	0.0591	0.0098	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0	0.0689	FALSE	231	204	14	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	13	MT-ND4	1998	chrM:11757:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18959	16	0	0.5	0.0295	0.1279	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.5	0.1574	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	13	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6258	44	0	0.27	0.0295	0.1279	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.27	0.1574	FALSE	218	210	16	281	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	AC104389.28--HBG1	6	0	AC104389.28	1084	chr11:5526799:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0591	0	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	RCM1_LARGE_INTESTINE	1	1	0.0591	FALSE	0	1	0	13	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	C15orf57--CBX3	5	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	43	21	0.17	0.3	0.0492	0.0394	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RCM1_LARGE_INTESTINE	0.17	0.3	0.0886	TRUE	267	562	48	632	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND5--MT-ATP8	4	8	MT-ND5	2449	chrM:13785:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3935	42	0	0.22	0.0394	0.0787	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.22	0.1181	FALSE	43	37	8	105	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	6	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	21113	3	0	0.77	0.0394	0.0591	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.77	0.0985	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	10	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	19650	693	0	0.02	0.0295	0.0984	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.02	0.1279	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	10	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	NO	4340	6	0	0.68	0.0295	0.0984	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.68	0.1279	FALSE	43	37	8	105	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	ARHGAP21--LY96	5	1	ARHGAP21	27045	chr10:24878200:-	LY96	36966	chr8:74939024:+	ONLY_REF_SPLICE	YES	58	0	0.09	1	0.0492	0.0098	ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,LY96->chr8:74903587-74941322:+,lymphocyte_antigen_96	RCM1_LARGE_INTESTINE	0.09	1	0.059	TRUE	0	0	0	1	0	TRUE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	9	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	NO	19609	3	0	0.8	0.0295	0.0886	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.8	0.1181	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	9	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19135	44	0	0.21	0.0295	0.0886	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.21	0.1181	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND6--MT-TE	3	9	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0295	0.0886	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCM1_LARGE_INTESTINE	1	1	0.1181	FALSE	499	1288	110	792	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND6--MT-TE	5	1	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0492	0.0098	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCM1_LARGE_INTESTINE	1	1	0.059	FALSE	499	1288	110	792	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	8	MT-ND4	1469	chrM:11228:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	21419	0	0	1	0.0295	0.0787	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	1	0.1082	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	7	MT-ND4	1369	chrM:11128:+	MT-ATP8	5409	chrM:8396:+	INCL_NON_REF_SPLICE	YES	22070	0	0	1	0.0295	0.0689	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	1	0.0984	FALSE	231	216	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	7	MT-ND4	1762	chrM:11521:+	MT-ATP8	5456	chrM:8443:+	INCL_NON_REF_SPLICE	YES	19621	6	0	0.62	0.0295	0.0689	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.62	0.0984	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	7	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	5551	6	0	0.62	0.0295	0.0689	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.62	0.0984	FALSE	43	37	8	105	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0394	0.0295	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RCM1_LARGE_INTESTINE	0.88	1	0.0689	FALSE	515	4851	409	746	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	6	MT-ND4	1477	chrM:11236:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	21204	16	0	0.36	0.0295	0.0591	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.36	0.0886	FALSE	231	217	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MID1--YIPF6	3	5	MID1	7818	chrX:10535042:-	YIPF6	27545	chrX:67731691:+	INCL_NON_REF_SPLICE	YES	11	33	0.42	0.2	0.0295	0.0492	{Klijn_CCL:Colo-Rectal=1},MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+	RCM1_LARGE_INTESTINE	0.2	0.42	0.0787	TRUE	0	0	0	1	0	TRUE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16116	16	0	0.24	0.0394	0.0098	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.24	0.0492	FALSE	230	193	14	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	1	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	9814	4	0	0.56	0.0394	0.0098	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.56	0.0492	FALSE	230	193	14	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	19	1	0.21	0.0394	0.0098	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RCM1_LARGE_INTESTINE	0.21	1	0.0492	TRUE	465	1949	224	605	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0295	0.0492	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RCM1_LARGE_INTESTINE	0.89	1	0.0787	FALSE	407	2205	196	549	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	4	MT-ND4	1342	chrM:11101:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21559	44	0	0.14	0.0295	0.0394	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.14	0.0689	FALSE	231	215	16	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	4	MT-ND5	2220	chrM:13556:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	5114	609	0	0.01	0.0295	0.0394	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.01	0.0689	FALSE	43	37	8	105	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	4	MT-ND5	1789	chrM:13125:+	MT-ATP8	5881	chrM:8434:+	INCL_NON_REF_SPLICE	YES	5255	3	0	0.7	0.0295	0.0394	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.7	0.0689	FALSE	43	37	8	105	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RCM1_LARGE_INTESTINE	1	1	0.0394	FALSE	369	2501	205	193	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RCM1_LARGE_INTESTINE	1	1	0.0394	FALSE	369	2501	205	193	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	RP11-1L12.3--SLC5A12	4	0	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0394	0	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	RCM1_LARGE_INTESTINE	1	1	0.0394	TRUE	3	101	0	60	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	RP11-296I10.6--AARS	4	0	RP11-296I10.6	2271	chr16:70277530:-	AARS	24366	chr16:70305875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_REARRANGEMENT:-:[6679],RP11-296I10.6->chr16:70253477-70279519:-,AARS->alanyl-tRNA_synthetase,chr16:70286198-70323446:-	RCM1_LARGE_INTESTINE	1	1	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	3	MT-ND5	1969	chrM:13305:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	6082	448	0	0.01	0.0295	0.0295	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.01	0.059	FALSE	43	37	8	105	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND6--MT-TE	3	2	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0.0197	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCM1_LARGE_INTESTINE	1	1	0.0492	FALSE	499	1288	110	792	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0.0591	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RCM1_LARGE_INTESTINE	1	1	0.0788	FALSE	467	2173	244	435	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	FTH1--ACTB	3	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	6532	0	0	1	0.0295	0.0098	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	RCM1_LARGE_INTESTINE	0	1	0.0393	FALSE	1	0	0	97	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	9301	3	0	0.57	0.0295	0.0098	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.57	0.0393	FALSE	230	193	14	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1093	chrM:10852:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	YES	8428	745	0	0.01	0.0295	0.0098	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.01	0.0393	FALSE	230	193	14	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1268	chrM:11027:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	18454	11	0	0.27	0.0295	0.0098	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.27	0.0393	FALSE	231	205	14	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15961	16	0	0.2	0.0295	0.0098	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.2	0.0393	FALSE	230	193	14	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	NO	16131	55	0	0.07	0.0295	0.0098	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.07	0.0393	FALSE	231	204	14	283	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	1	MT-ND5	1602	chrM:12938:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	6708	609	0	0.01	0.0295	0.0098	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.01	0.0393	FALSE	42	36	7	104	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	1	MT-ND5	1671	chrM:13007:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	6026	609	0	0.01	0.0295	0.0098	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCM1_LARGE_INTESTINE	0	0.01	0.0393	FALSE	42	36	7	104	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	NRIP1--AF127936.7	3	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.25	1	0.0295	0.0098	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RCM1_LARGE_INTESTINE	0.25	1	0.0393	FALSE	164	806	69	479	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	ADAP1--SUN1	3	0	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	RCM1_LARGE_INTESTINE	1	1	0.0295	TRUE	16	22	0	27	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCM1_LARGE_INTESTINE	1	1	0.0295	FALSE	499	1288	110	792	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	NCOR2--UBC	3	0	NCOR2	30035	chr12:124846672:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	RCM1_LARGE_INTESTINE	1	1	0.0295	TRUE	4	3	1	2	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MID1--YIPF6	2	3	MID1	7932	chrX:10534928:-	YIPF6	28674	chrX:67733169:+	ONLY_REF_SPLICE	YES	6	272	0.45	0.02	0.0197	0.0295	{Klijn_CCL:Colo-Rectal=1},MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+	RCM1_LARGE_INTESTINE	0.02	0.45	0.0492	TRUE	0	0	0	1	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	ADAP1--NOC4L	2	1	ADAP1	9672	chr7:959605:-	NOC4L	25427	chr12:132635526:+	ONLY_REF_SPLICE	YES	501	43	0.01	0.07	0.0197	0.0098	GTEx_v2:{count=2;pct=0.02%;dist=Colon_-_Transverse=2},ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	RCM1_LARGE_INTESTINE	0.01	0.07	0.0295	FALSE	0	2	0	3	1	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MID1--YIPF6	2	0	MID1	3721	chrX:10588330:-	YIPF6	27545	chrX:67731691:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	{Klijn_CCL:Colo-Rectal=1},MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+	RCM1_LARGE_INTESTINE	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000565
RCM1_LARGE_INTESTINE	PCMTD2--FIP1L1	2	0	PCMTD2	8241	chr20:62896782:+	FIP1L1	24782	chr4:54249940:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	PCMTD2->chr20:62887094-62926855:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_2,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	RCM1_LARGE_INTESTINE	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000565
RCM1_LARGE_INTESTINE	RP13-188A5.1--KLF8	2	0	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	RCM1_LARGE_INTESTINE	1	1	0.0197	TRUE	10	78	6	20	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	TIMM23--RP11-464F9.1	2	0	TIMM23	4782	chr10:51612904:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RCM1_LARGE_INTESTINE	1	1	0.0197	TRUE	4	2	0	9	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	DIS3L--AAGAB	1	1	DIS3L	2925	chr15:66587479:+	AAGAB	25751	chr15:67529158:-	ONLY_REF_SPLICE	YES	31	36	0.06	0.05	0.0098	0.0098	DIS3L->DIS3_like_exosome_3'-5'_exoribonuclease,chr15:66585555-66626236:+,AAGAB->alpha-_and_gamma-adaptin_binding_protein,chr15:67493371-67547533:-	RCM1_LARGE_INTESTINE	0.05	0.06	0.0196	TRUE	0	0	0	1	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	MBNL2--RP11-248E9.6	1	1	MBNL2	3876	chr13:97928663:+	RP11-248E9.6	18903	chr12:88210889:+	ONLY_REF_SPLICE	YES	107	0	0.02	1	0.0098	0.0098	MBNL2->chr13:97873688-98046374:+,muscleblind_like_splicing_regulator_2,RP11-248E9.6->chr12:88210263-88211608:+	RCM1_LARGE_INTESTINE	0.02	1	0.0196	TRUE	0	0	0	1	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	PPP1R12A--PAWR	1	1	PPP1R12A	6275	chr12:80239082:-	PAWR	51540	chr12:79990438:-	ONLY_REF_SPLICE	YES	34	119	0.06	0.02	0.0098	0.0098	{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[82466],PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator	RCM1_LARGE_INTESTINE	0.02	0.06	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	PTPRK--THEMIS	1	1	PTPRK	1467	chr6:128841404:-	THEMIS	61436	chr6:128040968:-	ONLY_REF_SPLICE	NO	46	0	0.04	1	0.0098	0.0098	{Klijn_CCL:Lung=1},NEIGHBORS[50148],PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,THEMIS->chr6:128029217-128239776:-,thymocyte_selection_associated	RCM1_LARGE_INTESTINE	0.04	1	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0098	0.0098	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	RCM1_LARGE_INTESTINE	1	1	0.0196	FALSE	81	155	12	160	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	6	1	0.25	0.0098	0.0098	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RCM1_LARGE_INTESTINE	0.25	1	0.0196	TRUE	458	1351	185	561	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	54	1	0.04	0.0098	0.0098	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RCM1_LARGE_INTESTINE	0.04	1	0.0196	TRUE	64	13	3	59	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	UBAP1--EEF1D	1	1	UBAP1	1236	chr9:34179238:+	EEF1D	25945	chr8:144669022:-	ONLY_REF_SPLICE	YES	64	141	0.03	0.01	0.0098	0.0098	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	RCM1_LARGE_INTESTINE	0.01	0.03	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000565
RCM1_LARGE_INTESTINE	WDSUB1--PCMTD2	1	1	WDSUB1	4047	chr2:160136272:-	PCMTD2	21456	chr20:62895782:+	ONLY_REF_SPLICE	NO	15	209	0.12	0.01	0.0098	0.0098	WDSUB1->WD_repeat,_sterile_alpha_motif_and_U-box_domain_containing_1,chr2:160092304-160143310:-,PCMTD2->chr20:62887094-62926855:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_2	RCM1_LARGE_INTESTINE	0.01	0.12	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000565
HCC2429_LUNG	BRD4--NUTM1	300	327	BRD4	15381	chr19:15364963:-	NUTM1	33170	chr15:34640170:+	ONLY_REF_SPLICE	YES	54	7	0.92	0.99	1.8118	1.9749	Cosmic{samples=174,mutations=19,papers=13},BRD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},bromodomain_containing_4,chr19:15347647-15443356:-,NUTM1->NUT_midline_carcinoma_family_member_1,Oncogene{Bushman},chr15:34635516-34649938:+	HCC2429_LUNG	0.92	0.99	3.7867	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	KANSL1--ARL17B	142	97	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	78	150	0.75	0.61	0.8576	0.5858	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC2429_LUNG	0.61	0.75	1.4434	TRUE	181	1564	124	196	0	FALSE	ACH-000143
HCC2429_LUNG	TIMM23B--LINC00843	141	52	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8516	0.314	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC2429_LUNG	1	1	1.1656	TRUE	508	994	45	981	0	FALSE	ACH-000143
HCC2429_LUNG	METTL2B--RP11-155G14.6	135	74	METTL2B	1147	chr7:128116929:+	RP11-155G14.6	21665	chr7:128106617:+	ONLY_REF_SPLICE	YES	147	0	0.59	1	0.8153	0.4469	LOCAL_REARRANGEMENT:+:[7532],METTL2B->chr7:128116783-128146656:+,methyltransferase_like_2B,RP11-155G14.6->chr7:128095991-128109251:+	HCC2429_LUNG	0.59	1	1.2622	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	MT-TA--MT-TN	132	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7972	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2429_LUNG	1	1	0.7972	FALSE	369	2501	205	193	0	FALSE	ACH-000143
HCC2429_LUNG	BRD4--NUTM1	19	353	BRD4	15381	chr19:15364963:-	NUTM1	32076	chr15:34638143:+	ONLY_REF_SPLICE	YES	54	0	0.87	1	0.1147	2.1319	Cosmic{samples=174,mutations=19,papers=13},BRD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},bromodomain_containing_4,chr19:15347647-15443356:-,NUTM1->NUT_midline_carcinoma_family_member_1,Oncogene{Bushman},chr15:34635516-34649938:+	HCC2429_LUNG	0.87	1	2.2466	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	TIMM23--RP11-464F9.1	88	10	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	936	10	0.09	0.91	0.5315	0.0604	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC2429_LUNG	0.09	0.91	0.5919	TRUE	519	3926	326	965	0	FALSE	ACH-000143
HCC2429_LUNG	MT-TA--MT-TC	85	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5133	0.0544	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2429_LUNG	1	1	0.5677	FALSE	462	80	0	856	0	FALSE	ACH-000143
HCC2429_LUNG	ZNF654--HMGB2	75	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.453	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HCC2429_LUNG	1	1	0.453	TRUE	0	0	0	518	0	FALSE	ACH-000143
HCC2429_LUNG	HOXA3--C7orf31	53	53	HOXA3	3622	chr7:27166505:-	C7orf31	24039	chr7:25182433:-	ONLY_REF_SPLICE	YES	0	2	1	0.98	0.3201	0.3201	HOXA3->Oncogene{Bushman},chr7:27145803-27192200:-,homeobox_A3,C7orf31->chr7:25174316-25219975:-,chromosome_7_open_reading_frame_31	HCC2429_LUNG	0.98	1	0.6402	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	YWHAG--DTX2P1	54	28	YWHAG	1310	chr7:75988039:-	DTX2P1	25032	chr7:76669268:+	ONLY_REF_SPLICE	YES	1390	140	0.06	0.37	0.3261	0.1691	YWHAG->chr7:75956116-75988348:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_gamma,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	HCC2429_LUNG	0.06	0.37	0.4952	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	50	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	22210	5	0	0.91	0.302	0.0121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.91	0.3141	FALSE	230	193	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	PLXDC1--TAF13	40	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2416	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCC2429_LUNG	1	1	0.2416	TRUE	7	10	0	216	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	4	138	MT-ND4	1793	chrM:11552:+	MT-ND4L	5383	chrM:10474:+	INCL_NON_REF_SPLICE	YES	16088	0	0.01	1	0.0242	0.8334	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.01	1	0.8576	FALSE	344	827	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	YWHAG--DTX2P1	26	50	YWHAG	1310	chr7:75988039:-	DTX2P1	19368	chr7:76641197:+	ONLY_REF_SPLICE	YES	1390	180	0.05	0.3	0.157	0.302	YWHAG->chr7:75956116-75988348:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_gamma,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	HCC2429_LUNG	0.05	0.3	0.459	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	ATG10--SSBP2	38	0	ATG10	3326	chr5:81272060:+	SSBP2	48359	chr5:80711516:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2295	0	ATG10->autophagy_related_10,chr5:81267844-81572676:+,SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2	HCC2429_LUNG	1	1	0.2295	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	MT-TA--MT-TN	24	54	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1449	0.3261	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2429_LUNG	1	1	0.471	FALSE	369	2501	205	193	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	3	128	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	2920	1	0.04	0.99	0.0181	0.773	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.04	0.99	0.7911	FALSE	344	827	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	3	128	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	190	0	0.41	1	0.0181	0.773	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.41	1	0.7911	FALSE	344	827	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	6	115	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	51	1	0.7	0.99	0.0362	0.6945	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.7	0.99	0.7307	FALSE	344	826	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	3	126	MT-ND4	1180	chrM:10939:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	136	0	0.49	1	0.0181	0.761	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.49	1	0.7791	FALSE	344	826	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	3	124	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	95	0	0.57	1	0.0181	0.7489	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.57	1	0.767	FALSE	344	826	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	31	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22446	13	0	0.72	0.1872	0.0121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.72	0.1993	FALSE	230	198	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	7	79	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	32	1	0.73	0.99	0.0423	0.4771	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.73	0.99	0.5194	FALSE	344	821	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	4	89	MT-ND4	1475	chrM:11234:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	2285	0	0.04	1	0.0242	0.5375	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.04	1	0.5617	FALSE	344	827	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	25	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22210	13	0	0.68	0.151	0.0121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.68	0.1631	FALSE	230	193	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	NPM1P24--SET	25	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.151	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2429_LUNG	1	1	0.151	TRUE	0	0	0	434	0	FALSE	ACH-000143
HCC2429_LUNG	NIPA2--POLA1	23	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1389	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	HCC2429_LUNG	1	1	0.1389	TRUE	46	1352	75	139	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	17	23	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	28988	129	0	0.24	0.1027	0.1389	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.24	0.2416	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	HSP90AB1--MT-RNR2	21	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1268	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC2429_LUNG	1	1	0.1268	FALSE	13	9	0	364	0	FALSE	ACH-000143
HCC2429_LUNG	YWHAG--DTX2P1	12	36	YWHAG	1310	chr7:75988039:-	DTX2P1	23868	chr7:76652911:+	ONLY_REF_SPLICE	YES	1390	159	0.03	0.23	0.0725	0.2174	YWHAG->chr7:75956116-75988348:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_gamma,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	HCC2429_LUNG	0.03	0.23	0.2899	TRUE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	RASSF6--RP11-447E20.1	18	5	RASSF6	1344	chr4:74486005:-	RP11-447E20.1	20487	chr4:74643447:-	INCL_NON_REF_SPLICE	YES	829	34	0.03	0.4	0.1087	0.0302	RASSF6->Oncogene{Bushman},Ras_association_domain_family_member_6,chr4:74437267-74486348:-,RP11-447E20.1->chr4:74643353-74643777:-	HCC2429_LUNG	0.03	0.4	0.1389	TRUE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	17	6	MT-ND4	1310	chrM:11069:+	MT-ATP8	5529	chrM:8516:+	INCL_NON_REF_SPLICE	NO	30517	2174	0	0.01	0.1027	0.0362	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.01	0.1389	FALSE	231	205	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-TA--MT-TC	16	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0966	0.0483	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2429_LUNG	1	1	0.1449	FALSE	462	80	0	856	0	FALSE	ACH-000143
HCC2429_LUNG	MT-TA--MT-TN	8	40	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0.2416	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2429_LUNG	1	1	0.2899	FALSE	369	2501	205	193	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND6--MT-TE	17	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1027	0.0181	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2429_LUNG	1	1	0.1208	FALSE	499	1288	110	792	0	FALSE	ACH-000143
HCC2429_LUNG	C1orf194--UQCR10	16	4	C1orf194	3284	chr1:109650635:-	UQCR10	8361	chr22:30163372:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0966	0.0242	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.41%,GTEx_FI:{Testis=[count:16=pct:15.2],Pituitary=[count:4=pct:7.7],Lung=[count:4=pct:2.4],Brain=[count:3=pct:0.5],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Fallopian_Tube=[count:1=pct:16.7],Thyroid=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=13;pct=0.15%;dist=Testis=12,Adipose_-_Subcutaneous=1},C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	HCC2429_LUNG	0.95	1	0.1208	TRUE	26	6	0	14	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	9	31	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	24786	129	0	0.24	0.0544	0.1872	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.24	0.2416	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	YWHAG--DTX2P1	5	46	YWHAG	1310	chr7:75988039:-	DTX2P1	22779	chr7:76648226:+	ONLY_REF_SPLICE	YES	1390	170	0.04	0.23	0.0302	0.2778	YWHAG->chr7:75956116-75988348:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_gamma,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	HCC2429_LUNG	0.04	0.23	0.308	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	15	5	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	26454	13	0	0.61	0.0906	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.61	0.1208	FALSE	231	205	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	C15orf57--CBX3	12	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	74	79	0.27	0.26	0.0725	0.0966	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC2429_LUNG	0.26	0.27	0.1691	TRUE	267	562	48	632	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	6	39	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	26543	0	0	1	0.0362	0.2355	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.2717	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	9	27	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	30637	0	0	1	0.0544	0.1631	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.2175	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	8	31	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	24786	320	0	0.11	0.0483	0.1872	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.11	0.2355	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	7	33	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3763	129	0.01	0.24	0.0423	0.1993	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0.01	0.24	0.2416	FALSE	216	209	16	281	0	FALSE	ACH-000143
HCC2429_LUNG	MT-TA--MT-TC	11	15	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0.0906	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2429_LUNG	1	1	0.157	FALSE	462	80	0	856	0	FALSE	ACH-000143
HCC2429_LUNG	SLC4A10--PSMD14	10	19	SLC4A10	7170	chr2:162481076:+	PSMD14	62552	chr2:162265348:+	ONLY_REF_SPLICE	YES	981	2021	0.03	0.01	0.0604	0.1147	LOCAL_REARRANGEMENT:+:[12615],SLC4A10->chr2:162280843-162841792:+,solute_carrier_family_4_member_10,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	HCC2429_LUNG	0.01	0.03	0.1751	TRUE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	EEF2--RPS28	14	2	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	9737	0	0	1	0.0846	0.0121	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC2429_LUNG	0	1	0.0967	FALSE	0	0	0	100	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	46	MT-ND4	2258	chrM:12017:+	MT-ATP8	5406	chrM:8393:+	INCL_NON_REF_SPLICE	YES	2615	0	0.02	1	0.0181	0.2778	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0.02	1	0.2959	FALSE	216	209	16	281	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	8	26	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	29834	0	0	1	0.0483	0.157	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.2053	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	10	17	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2399	0	0.01	1	0.0604	0.1027	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.01	1	0.1631	FALSE	344	827	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	ARMC9--NCL	14	0	ARMC9	25522	chr2:232160966:+	NCL	44782	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0846	0	LOCAL_INVERSION:+:-:[78694],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,NCL->chr2:232318242-232348352:-,nucleolin	HCC2429_LUNG	1	1	0.0846	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	3	44	MT-ND4	1269	chrM:11028:+	MT-ND4L	5644	chrM:10735:+	INCL_NON_REF_SPLICE	YES	343	0	0.12	1	0.0181	0.2657	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.12	1	0.2838	FALSE	344	827	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	4	39	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	27852	0	0	1	0.0242	0.2355	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.2597	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	YWHAG--DTX2P1	1	50	YWHAG	1310	chr7:75988039:-	DTX2P1	21595	chr7:76644989:+	ONLY_REF_SPLICE	NO	1390	171	0.04	0.23	0.006	0.302	YWHAG->chr7:75956116-75988348:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_gamma,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	HCC2429_LUNG	0.04	0.23	0.308	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	MT-ND6--MT-TE	12	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0725	0.0242	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2429_LUNG	1	1	0.0967	FALSE	499	1288	110	792	0	FALSE	ACH-000143
HCC2429_LUNG	MT-TA--MT-TN	5	32	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.1933	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2429_LUNG	1	1	0.2235	FALSE	369	2501	205	193	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	39	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	28077	0	0	1	0.0181	0.2355	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.2536	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	39	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	26313	0	0	1	0.0181	0.2355	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.2536	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	7	23	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	30271	1802	0	0.02	0.0423	0.1389	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.02	0.1812	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	5	31	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	19935	0	0	1	0.0302	0.1872	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0	1	0.2174	FALSE	328	800	43	304	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	3	38	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	32	0	0.56	1	0.0181	0.2295	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.56	1	0.2476	FALSE	344	821	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND5--MT-ND6	8	18	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0.1087	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HCC2429_LUNG	1	1	0.157	FALSE	26	124	4	93	0	FALSE	ACH-000143
HCC2429_LUNG	MT-TA--MT-TN	5	30	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.1812	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2429_LUNG	1	1	0.2114	FALSE	369	2501	205	193	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	37	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	28362	0	0	1	0.0181	0.2235	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.2416	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	C15orf57--CBX3	9	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	70	83	0.23	0.2	0.0544	0.0725	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC2429_LUNG	0.2	0.23	0.1269	TRUE	267	562	48	632	0	FALSE	ACH-000143
HCC2429_LUNG	NPM1P24--SET	11	3	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	114	4092	0.11	0	0.0664	0.0181	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2429_LUNG	0	0.11	0.0845	FALSE	0	0	0	434	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	7	18	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	33211	0	0	1	0.0423	0.1087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.151	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND5--MT-ND6	8	14	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	2	6371	0.92	0	0.0483	0.0846	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HCC2429_LUNG	0	0.92	0.1329	FALSE	26	124	4	93	0	FALSE	ACH-000143
HCC2429_LUNG	METTL2B--RP11-155G14.6	1	41	METTL2B	1147	chr7:128116929:+	RP11-155G14.6	22788	chr7:128108899:+	ONLY_REF_SPLICE	YES	147	31	0.22	0.58	0.006	0.2476	LOCAL_REARRANGEMENT:+:[7532],METTL2B->chr7:128116783-128146656:+,methyltransferase_like_2B,RP11-155G14.6->chr7:128095991-128109251:+	HCC2429_LUNG	0.22	0.58	0.2536	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	3	33	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	9	0	0.8	1	0.0181	0.1993	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.8	1	0.2174	FALSE	344	821	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	SLC4A10--PSMD14	10	5	SLC4A10	4571	chr2:162477488:+	PSMD14	62552	chr2:162265348:+	ONLY_REF_SPLICE	YES	249	2021	0.06	0.01	0.0604	0.0302	LOCAL_REARRANGEMENT:+:[12615],SLC4A10->chr2:162280843-162841792:+,solute_carrier_family_4_member_10,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	HCC2429_LUNG	0.01	0.06	0.0906	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	3	32	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	7	0	0.83	1	0.0181	0.1933	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.83	1	0.2114	FALSE	344	821	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	7	16	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	190	0	0.11	1	0.0423	0.0966	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.11	1	0.1389	FALSE	344	826	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	MT-TA--MT-TN	4	28	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0.1691	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2429_LUNG	1	1	0.1933	FALSE	369	2501	205	193	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	5	23	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	31241	13	0	0.68	0.0302	0.1389	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.68	0.1691	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	RASSF6--RP11-447E20.1	10	3	RASSF6	1193	chr4:74486156:-	RP11-447E20.1	20487	chr4:74643447:-	INCL_NON_REF_SPLICE	YES	330	34	0.04	0.28	0.0604	0.0181	RASSF6->Oncogene{Bushman},Ras_association_domain_family_member_6,chr4:74437267-74486348:-,RP11-447E20.1->chr4:74643353-74643777:-	HCC2429_LUNG	0.04	0.28	0.0785	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	KANSL1--ARL17B	3	30	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	102	150	0.24	0.18	0.0181	0.1812	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC2429_LUNG	0.18	0.24	0.1993	TRUE	105	90	7	93	0	FALSE	ACH-000143
HCC2429_LUNG	RP11-603B24.1--HERC2P3	9	6	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	14	1	0.52	0.0544	0.0362	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	HCC2429_LUNG	0.52	1	0.0906	TRUE	27	10	1	20	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	29	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	31152	0	0	1	0.0181	0.1751	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.1932	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	29	MT-ND4	1776	chrM:11535:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	NO	31084	0	0	1	0.0181	0.1751	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.1932	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	HSP90AB1--MT-RNR2	10	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC2429_LUNG	1	1	0.0604	FALSE	13	9	0	364	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	28	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	30553	0	0	1	0.0181	0.1691	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.1872	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	5	19	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	28988	2209	0	0.01	0.0302	0.1147	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.01	0.1449	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	5	18	MT-ND4	1478	chrM:11237:+	MT-ATP8	5425	chrM:8412:+	INCL_NON_REF_SPLICE	YES	33326	0	0	1	0.0302	0.1087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.1389	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	5	17	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	33190	0	0	1	0.0302	0.1027	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.1329	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	5	17	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	33211	0	0	1	0.0302	0.1027	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.1329	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND6--MT-TE	6	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0.0785	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2429_LUNG	1	1	0.1147	FALSE	499	1288	110	792	0	FALSE	ACH-000143
HCC2429_LUNG	MT-TA--MT-TN	5	17	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.1027	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2429_LUNG	1	1	0.1329	FALSE	369	2501	205	193	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	5	16	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	36043	943	0	0.02	0.0302	0.0966	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.02	0.1268	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-TA--MT-TN	9	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2429_LUNG	1	1	0.0544	FALSE	369	2501	205	193	0	FALSE	ACH-000143
HCC2429_LUNG	KANSL1--ARL17B	1	29	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	78	110	0.28	0.21	0.006	0.1751	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC2429_LUNG	0.21	0.28	0.1811	TRUE	20	16	0	28	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND5--MT-ND6	4	17	MT-ND5	2761	chrM:14097:+	MT-ND6	6169	chrM:14317:-	INCL_NON_REF_SPLICE	YES	0	6457	1	0	0.0242	0.1027	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HCC2429_LUNG	0	1	0.1269	FALSE	26	124	4	93	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND6--MT-TE	6	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	59	0	0.2	1	0.0362	0.0544	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2429_LUNG	0.2	1	0.0906	FALSE	499	1288	110	792	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND6--MT-TE	5	13	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.0785	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2429_LUNG	1	1	0.1087	FALSE	499	1288	110	792	0	FALSE	ACH-000143
HCC2429_LUNG	SLC4A10--PSMD14	6	9	SLC4A10	6812	chr2:162480718:+	PSMD14	62552	chr2:162265348:+	ONLY_REF_SPLICE	YES	438	2021	0.03	0.01	0.0362	0.0544	LOCAL_REARRANGEMENT:+:[12615],SLC4A10->chr2:162280843-162841792:+,solute_carrier_family_4_member_10,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	HCC2429_LUNG	0.01	0.03	0.0906	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	7	3	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	24141	2202	0	0	0.0423	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0	0.0604	FALSE	231	204	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	18	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	33466	0	0	1	0.0181	0.1087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.1268	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	18	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	34058	0	0	1	0.0181	0.1087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.1268	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND6--MT-TE	4	14	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	58	0	0.24	1	0.0242	0.0846	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2429_LUNG	0.24	1	0.1088	FALSE	499	1288	110	792	0	FALSE	ACH-000143
HCC2429_LUNG	RP11-408A13.2--NFIB	6	6	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	294	1	0.04	0.0362	0.0362	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	HCC2429_LUNG	0.04	1	0.0724	TRUE	0	14	0	20	14	FALSE	ACH-000143
HCC2429_LUNG	RP11-680G10.1--GSE1	7	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	143	1	0.06	0.0423	0.0121	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC2429_LUNG	0.06	1	0.0544	TRUE	465	1949	224	605	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	17	MT-ND4	1645	chrM:11404:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	34128	129	0	0.13	0.0181	0.1027	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.13	0.1208	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND6--MT-TE	4	13	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0.0785	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2429_LUNG	1	1	0.1027	FALSE	499	1288	110	792	0	FALSE	ACH-000143
HCC2429_LUNG	MT-TA--MT-TN	4	13	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0.0785	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2429_LUNG	1	1	0.1027	FALSE	369	2501	205	193	0	FALSE	ACH-000143
HCC2429_LUNG	CCAT1--CASC11	5	8	CCAT1	1279	chr8:128231055:-	CASC11	11226	chr8:128715488:-	ONLY_REF_SPLICE	YES	313	1	0.04	0.93	0.0302	0.0483	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	HCC2429_LUNG	0.04	0.93	0.0785	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	5	8	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	413	0	0.03	1	0.0302	0.0483	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.03	1	0.0785	FALSE	344	827	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	3	16	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	183	0	0.09	1	0.0181	0.0966	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.09	1	0.1147	FALSE	344	826	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	3	16	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	375	0	0.05	1	0.0181	0.0966	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.05	1	0.1147	FALSE	344	827	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ND4L	5	8	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	413	0	0.03	1	0.0302	0.0483	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2429_LUNG	0.03	1	0.0785	FALSE	344	827	44	306	0	FALSE	ACH-000143
HCC2429_LUNG	BMP4--RPS19	6	3	BMP4	8572	chr14:54416954:-	RPS19	12410	chr19:42364325:+	INCL_NON_REF_SPLICE	YES	1307	9	0.01	0.5	0.0362	0.0181	BMP4->bone_morphogenetic_protein_4,chr14:54416454-54425479:-,RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19	HCC2429_LUNG	0.01	0.5	0.0543	FALSE	0	0	0	5	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	15	MT-ND4	1540	chrM:11299:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	36458	129	0	0.12	0.0181	0.0906	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.12	0.1087	FALSE	231	217	16	283	0	FALSE	ACH-000143
HCC2429_LUNG	RP11-680G10.1--GSE1	6	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	66	1	0.12	0.0362	0.0181	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC2429_LUNG	0.12	1	0.0543	TRUE	458	1351	185	561	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	6	2	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	22558	188	0	0.04	0.0362	0.0121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.04	0.0483	FALSE	231	204	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	C15orf57--CBX3	3	13	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	70	81	0.19	0.16	0.0181	0.0785	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC2429_LUNG	0.16	0.19	0.0966	TRUE	267	562	48	632	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	4	9	MT-ND4	1311	chrM:11070:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	30724	3	0	0.81	0.0242	0.0544	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.81	0.0786	FALSE	231	205	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	SLC4A10--AC008063.2	4	9	SLC4A10	7170	chr2:162481076:+	AC008063.2	46261	chr2:162929922:+	ONLY_REF_SPLICE	YES	981	3	0.01	0.81	0.0242	0.0544	NEIGHBORS[87974],SLC4A10->chr2:162280843-162841792:+,solute_carrier_family_4_member_10,AC008063.2->chr2:162929766-162931679:+	HCC2429_LUNG	0.01	0.81	0.0786	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	ARMC9--NCL	6	0	ARMC9	25522	chr2:232160966:+	NCL	44800	chr2:232325470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	LOCAL_INVERSION:+:-:[78694],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,NCL->chr2:232318242-232348352:-,nucleolin	HCC2429_LUNG	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	4	8	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	30841	1802	0	0.01	0.0242	0.0483	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.01	0.0725	FALSE	231	205	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND6--RPL13AP5	6	0	MT-ND6	1333	chrM:14341:-	RPL13AP5	4622	chr10:98510141:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,RPL13AP5->chr10:98510045-98510675:+,ribosomal_protein_L13a_pseudogene_5	HCC2429_LUNG	1	1	0.0362	FALSE	1	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	REV3L--RPL28	6	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	HCC2429_LUNG	1	1	0.0362	TRUE	22	156	2	142	0	FALSE	ACH-000143
HCC2429_LUNG	SLC4A10--PSMD14	1	20	SLC4A10	7170	chr2:162481076:+	PSMD14	57934	chr2:162241975:+	ONLY_REF_SPLICE	NO	981	3463	0.02	0.01	0.006	0.1208	LOCAL_REARRANGEMENT:+:[12615],SLC4A10->chr2:162280843-162841792:+,solute_carrier_family_4_member_10,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	HCC2429_LUNG	0.01	0.02	0.1268	TRUE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	NPM1P24--SET	5	3	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	114	4081	0.07	0	0.0302	0.0181	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2429_LUNG	0	0.07	0.0483	FALSE	0	0	0	434	0	FALSE	ACH-000143
HCC2429_LUNG	SLC4A10--PSMD14	1	19	SLC4A10	7170	chr2:162481076:+	PSMD14	59042	chr2:162247615:+	ONLY_REF_SPLICE	YES	981	3231	0.02	0.01	0.006	0.1147	LOCAL_REARRANGEMENT:+:[12615],SLC4A10->chr2:162280843-162841792:+,solute_carrier_family_4_member_10,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	HCC2429_LUNG	0.01	0.02	0.1207	TRUE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22400	129	0	0.05	0.0302	0.0121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.05	0.0423	FALSE	230	198	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	9	MT-ND4	1314	chrM:11073:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	NO	30658	0	0	1	0.0181	0.0544	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.0725	FALSE	231	205	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-TA--MT-TC	5	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.006	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2429_LUNG	1	1	0.0362	FALSE	462	80	0	856	0	FALSE	ACH-000143
HCC2429_LUNG	NPM1P24--SET	5	1	NPM1P24	1533	chr10:74677760:-	SET	12307	chr9:131456202:+	INCL_NON_REF_SPLICE	NO	114	4110	0.05	0	0.0302	0.006	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2429_LUNG	0	0.05	0.0362	FALSE	0	0	0	434	0	FALSE	ACH-000143
HCC2429_LUNG	NPM1P24--SET	5	1	NPM1P24	1533	chr10:74677760:-	SET	12301	chr9:131456196:+	INCL_NON_REF_SPLICE	NO	114	4175	0.05	0	0.0302	0.006	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2429_LUNG	0	0.05	0.0362	FALSE	0	0	0	434	0	FALSE	ACH-000143
HCC2429_LUNG	FTH1--ACTG1	5	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HCC2429_LUNG	1	1	0.0302	TRUE	0	0	0	64	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	1311	chrM:11070:+	MT-ATP8	5527	chrM:8514:+	INCL_NON_REF_SPLICE	NO	30724	2142	0	0	0.0181	0.0423	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0	0.0604	FALSE	231	205	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	4	3	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	23311	0	0	1	0.0242	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.0423	FALSE	231	204	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	NPM1P24--SET	4	3	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	114	4152	0.06	0	0.0242	0.0181	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2429_LUNG	0	0.06	0.0423	FALSE	0	0	0	434	0	FALSE	ACH-000143
HCC2429_LUNG	ARL15--NDUFS4	4	2	ARL15	1151	chr5:53606262:-	NDUFS4	19173	chr5:52954381:+	ONLY_REF_SPLICE	YES	125	2040	0.05	0	0.0242	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	HCC2429_LUNG	0	0.05	0.0363	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	22575	670	0	0.01	0.0242	0.0121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.01	0.0363	FALSE	231	204	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-TA--MT-TC	3	6	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0181	0.0362	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2429_LUNG	1	1	0.0543	FALSE	462	80	0	856	0	FALSE	ACH-000143
HCC2429_LUNG	XXbac-BPG252P9.9--TUBBP2	4	2	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	NO	4581	0	0	1	0.0242	0.0121	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HCC2429_LUNG	0	1	0.0363	FALSE	0	1	0	48	1	FALSE	ACH-000143
HCC2429_LUNG	RASSF6--RP11-447E20.1	3	5	RASSF6	3489	chr4:74477448:-	RP11-447E20.1	20487	chr4:74643447:-	INCL_NON_REF_SPLICE	YES	882	34	0.01	0.19	0.0181	0.0302	RASSF6->Oncogene{Bushman},Ras_association_domain_family_member_6,chr4:74437267-74486348:-,RP11-447E20.1->chr4:74643353-74643777:-	HCC2429_LUNG	0.01	0.19	0.0483	FALSE	0	1	0	2	1	FALSE	ACH-000143
HCC2429_LUNG	XXbac-BPG252P9.9--TUBBP2	4	1	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	1869	0	0	1	0.0242	0.006	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HCC2429_LUNG	0	1	0.0302	FALSE	0	1	0	48	1	FALSE	ACH-000143
HCC2429_LUNG	ETV1--DGKB	4	0	ETV1	11702	chr7:13978742:-	DGKB	59557	chr7:14217776:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	ETV1->ArcherDX_panel,ETS_variant_1,FoundationOne_panel,Oncogene{Bushman},chr7:13930853-14031050:-,DGKB->chr7:14184674-15014402:-,diacylglycerol_kinase_beta	HCC2429_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	1	1	0.0242	FALSE	230	191	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2429_LUNG	1	1	0.0242	FALSE	369	2501	205	193	0	FALSE	ACH-000143
HCC2429_LUNG	MT-TA--MT-TN	4	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2429_LUNG	1	1	0.0242	FALSE	369	2501	205	193	0	FALSE	ACH-000143
HCC2429_LUNG	ARL15--NDUFS4	2	7	ARL15	5950	chr5:53409032:-	NDUFS4	18000	chr5:52942063:+	ONLY_REF_SPLICE	YES	233	2695	0.04	0	0.0121	0.0423	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	HCC2429_LUNG	0	0.04	0.0544	FALSE	5	61	2	9	0	FALSE	ACH-000143
HCC2429_LUNG	HOXA3--C7orf31	1	11	HOXA3	2437	chr7:27179702:-	C7orf31	24039	chr7:25182433:-	ONLY_REF_SPLICE	NO	6	2	0.67	0.86	0.006	0.0664	HOXA3->Oncogene{Bushman},chr7:27145803-27192200:-,homeobox_A3,C7orf31->chr7:25174316-25219975:-,chromosome_7_open_reading_frame_31	HCC2429_LUNG	0.67	0.86	0.0724	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1261	chrM:11020:+	MT-ATP8	5407	chrM:8394:+	INCL_NON_REF_SPLICE	YES	24933	0	0	1	0.0181	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.0362	FALSE	231	205	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1262	chrM:11021:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	25271	0	0	1	0.0181	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.0362	FALSE	231	205	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	NPM1P24--SET	3	3	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	114	4424	0.05	0	0.0181	0.0181	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2429_LUNG	0	0.05	0.0362	FALSE	0	0	0	434	0	FALSE	ACH-000143
HCC2429_LUNG	AK2--MT-CO3	3	2	AK2	13236	chr1:33476397:-	MT-CO3	19408	chrM:9566:+	INCL_NON_REF_SPLICE	NO	182	22464	0.03	0	0.0181	0.0121	AK2->adenylate_kinase_2,chr1:33473585-33546597:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HCC2429_LUNG	0	0.03	0.0302	FALSE	0	0	0	2	0	FALSE	ACH-000143
HCC2429_LUNG	CCAT1--CASC11	1	10	CCAT1	1279	chr8:128231055:-	CASC11	10004	chr8:128728414:-	ONLY_REF_SPLICE	YES	313	0	0.03	1	0.006	0.0604	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	HCC2429_LUNG	0.03	1	0.0664	TRUE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	26119	2124	0	0	0.0181	0.0121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0	0.0302	FALSE	231	205	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	SLC4A10--PSMD14	1	10	SLC4A10	6812	chr2:162480718:+	PSMD14	57934	chr2:162241975:+	ONLY_REF_SPLICE	YES	438	3463	0.02	0	0.006	0.0604	LOCAL_REARRANGEMENT:+:[12615],SLC4A10->chr2:162280843-162841792:+,solute_carrier_family_4_member_10,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	HCC2429_LUNG	0	0.02	0.0664	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	ARL15--NDUFS4	2	5	ARL15	1151	chr5:53606262:-	NDUFS4	18000	chr5:52942063:+	ONLY_REF_SPLICE	YES	125	2695	0.05	0	0.0121	0.0302	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	HCC2429_LUNG	0	0.05	0.0423	FALSE	0	13	0	1	3	FALSE	ACH-000143
HCC2429_LUNG	MIR205HG--HOXC5	3	1	MIR205HG	4006	chr1:209605170:+	HOXC5	9445	chr12:54428062:+	ONLY_REF_SPLICE	YES	356	31	0.01	0.11	0.0181	0.006	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,HOXC5->chr12:54426637-54429142:+,homeobox_C5	HCC2429_LUNG	0.01	0.11	0.0241	FALSE	0	6	0	2	1	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	NO	12907	670	0	0.01	0.0181	0.006	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	0.01	0.0241	FALSE	230	193	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1195	chrM:10954:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	NO	20498	0	0	1	0.0181	0.006	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	0	1	0.0241	FALSE	230	193	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	RPLP1--RPL4	3	1	RPLP1	1172	chr15:69745294:+	RPL4	10196	chr15:66797146:-	INCL_NON_REF_SPLICE	YES	5016	0	0	1	0.0181	0.006	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,RPL4->chr15:66790355-66816870:-,ribosomal_protein_L4	HCC2429_LUNG	0	1	0.0241	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	SSBP2--ATG10	3	1	SSBP2	28110	chr5:80711517:-	ATG10	36114	chr5:81272061:+	INCL_NON_REF_SPLICE	NO	205	0	0.02	1	0.0181	0.006	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=5;pct=0.06%;dist=Thyroid=1,Esophagus_-_Mucosa=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,ATG10->autophagy_related_10,chr5:81267844-81572676:+	HCC2429_LUNG	0.02	1	0.0241	TRUE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	ARMC9--NCL	3	0	ARMC9	25526	chr2:232160970:+	NCL	44798	chr2:232325472:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_INVERSION:+:-:[78694],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,NCL->chr2:232318242-232348352:-,nucleolin	HCC2429_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	ARMC9--NCL	3	0	ARMC9	25522	chr2:232160966:+	NCL	43896	chr2:232326374:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_INVERSION:+:-:[78694],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,NCL->chr2:232318242-232348352:-,nucleolin	HCC2429_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	DCN--XPO1	3	0	DCN	14826	chr12:91550867:-	XPO1	45824	chr2:61711168:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0181	0	DCN->chr12:91539025-91576900:-,decorin,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	HCC2429_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	EEF2--EIF3H	3	0	EEF2	3243	chr19:3983225:-	EIF3H	15911	chr8:117768017:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0181	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	HCC2429_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	HERC4--MT-ND5	3	0	HERC4	1079	chr10:69835027:-	MT-ND5	44093	chrM:12489:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0181	0	HERC4->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_4,chr10:69681665-69835105:-,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HCC2429_LUNG	1	1	0.0181	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1036	chrM:10795:+	MT-ATP8	5422	chrM:8409:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2429_LUNG	1	1	0.0181	FALSE	230	191	14	283	0	FALSE	ACH-000143
HCC2429_LUNG	MT-TA--MT-TN	3	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0181	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2429_LUNG	1	1	0.0181	FALSE	369	2501	205	193	0	FALSE	ACH-000143
HCC2429_LUNG	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1027	chr6:30691628:-	TUBBP2	4927	chr13:41959166:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0181	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HCC2429_LUNG	1	1	0.0181	TRUE	0	1	0	48	1	FALSE	ACH-000143
HCC2429_LUNG	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0181	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HCC2429_LUNG	1	1	0.0181	TRUE	0	1	0	48	1	FALSE	ACH-000143
HCC2429_LUNG	HOXA-AS2--BRD4	1	7	HOXA-AS2	10303	chr7:27164229:+	BRD4	32628	chr19:15360101:-	ONLY_REF_SPLICE	NO	0	44	1	0.15	0.006	0.0423	HOXA-AS2->HOXA_cluster_antisense_RNA_2,chr7:27147396-27173921:+,BRD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},bromodomain_containing_4,chr19:15347647-15443356:-	HCC2429_LUNG	0.15	1	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	C7orf31--NOP10	2	2	C7orf31	7732	chr7:25191215:-	NOP10	16473	chr15:34634309:-	ONLY_REF_SPLICE	YES	2	699	0.67	0.01	0.0121	0.0121	C7orf31->chr7:25174316-25219975:-,chromosome_7_open_reading_frame_31,NOP10->NOP10_ribonucleoprotein,chr15:34633917-34635378:-	HCC2429_LUNG	0.01	0.67	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	SLC4A10--PSMD14	1	6	SLC4A10	4571	chr2:162477488:+	PSMD14	50188	chr2:162223989:+	ONLY_REF_SPLICE	YES	249	2421	0.03	0	0.006	0.0362	LOCAL_REARRANGEMENT:+:[12615],SLC4A10->chr2:162280843-162841792:+,solute_carrier_family_4_member_10,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	HCC2429_LUNG	0	0.03	0.0422	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	CCAT1--CASC11	2	1	CCAT1	1279	chr8:128231055:-	CASC11	14729	chr8:128701668:-	ONLY_REF_SPLICE	YES	313	0	0.01	1	0.0121	0.006	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	HCC2429_LUNG	0.01	1	0.0181	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	ADD3--XPNPEP1	2	0	ADD3	3765	chr10:111768057:+	XPNPEP1	36843	chr10:111648353:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	LOCAL_INVERSION:+:-:[72815],ADD3->Oncogene{Bushman},adducin_3,chr10:111756126-111895323:+,XPNPEP1->X-prolyl_aminopeptidase_(aminopeptidase_P)_1,_soluble,chr10:111624524-111683311:-	HCC2429_LUNG	1	1	0.0121	TRUE	0	1	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	AKT3--MARK3	2	0	AKT3	25845	chr1:243708812:-	MARK3	52114	chr14:103934418:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	PROTCLUST,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	CPSF4--ATP5J2	2	0	CPSF4	1264	chr7:99036808:+	ATP5J2	16527	chr7:99057816:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	NEIGHBORS_OVERLAP:+:-:[8896],CPSF4->chr7:99036545-99054994:+,cleavage_and_polyadenylation_specific_factor_4,ATP5J2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_F2,chr7:99046098-99063954:-	HCC2429_LUNG	1	1	0.0121	FALSE	0	1	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	11	0	TRUE	ACH-000143
HCC2429_LUNG	FGD6--UBE2E1	2	0	FGD6	20975	chr12:95485483:-	UBE2E1	43396	chr3:23932000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	FGD6->FYVE,_RhoGEF_and_PH_domain_containing_6,chr12:95470525-95611258:-,UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	GLTSCR2--DHX34	2	0	GLTSCR2	1262	chr19:48249040:+	DHX34	29491	chr19:47885237:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:2=pct:3.8],Breast=[count:2=pct:1.8],Cervix_Uteri=[count:1=pct:12.5],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=4;pct=0.05%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hippocampus=1,Whole_Blood=1,Spleen=1},GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+	HCC2429_LUNG	1	1	0.0121	TRUE	14	43	2	13	0	FALSE	ACH-000143
HCC2429_LUNG	GPC5--DNM3OS	2	0	GPC5	10063	chr13:92797242:+	DNM3OS	15377	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	MNT--CPSF7	2	0	MNT	1479	chr17:2303934:-	CPSF7	19347	chr11:61196762:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	MNT->MAX_network_transcriptional_repressor,chr17:2287354-2304412:-,CPSF7->chr11:61170121-61197503:-,cleavage_and_polyadenylation_specific_factor_7	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	MYL6--EEF1D	2	0	MYL6	2462	chr12:56553406:+	EEF1D	20463	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	GTEx&tcga_normals:1/3694=0.03%,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	2	0	TRUE	ACH-000143
HCC2429_LUNG	RBM23--MRPL52	2	0	RBM23	6943	chr14:23378692:-	MRPL52	21923	chr14:23303381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_INVERSION:-:+:[65608],RBM23->RNA_binding_motif_protein_23,chr14:23369854-23388393:-,MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	HCC2429_LUNG	1	1	0.0121	TRUE	0	1	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	RPL31--EIF3H	2	0	RPL31	5008	chr2:101622533:+	EIF3H	27828	chr8:117658842:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	RPL31->chr2:101618177-101640494:+,ribosomal_protein_L31,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	SERPINB13--DENND4C	2	0	SERPINB13	7613	chr18:61262418:+	DENND4C	19721	chr9:19288594:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	SERPINB13->chr18:61254223-61271873:+,serpin_family_B_member_13,DENND4C->DENN_domain_containing_4C,chr9:19230433-19374139:+	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	SETD5--RAD18	2	0	SETD5	1363	chr3:9439661:+	RAD18	46818	chr3:8954056:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	SETD5->SET_domain_containing_5,chr3:9439299-9520924:+,RAD18->RAD18,_E3_ubiquitin_protein_ligase,chr3:8817088-9005457:-	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	SLC25A12--CBS	2	0	SLC25A12	5477	chr2:172749715:-	CBS	33173	chr21:44493451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	SLC25A12->chr2:172640880-172864766:-,solute_carrier_family_25_member_12,CBS->chr21:44473301-44497053:-,cystathionine-beta-synthase	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	SSBP2--ATG10	2	0	SSBP2	1817	chr5:81046800:-	ATG10	42422	chr5:81460218:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=5;pct=0.06%;dist=Thyroid=1,Esophagus_-_Mucosa=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,ATG10->autophagy_related_10,chr5:81267844-81572676:+	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	ZNF8--RAB10	2	0	ZNF8	1197	chr19:58790513:+	RAB10	10239	chr2:26321531:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0	ZNF8->chr19:58790317-58807254:+,chr19:58790318-58807254:+,zinc_finger_protein_8,RAB10->RAB10,_member_RAS_oncogene_family,chr2:26256976-26360323:+	HCC2429_LUNG	1	1	0.0121	TRUE	0	0	0	1	0	TRUE	ACH-000143
HCC2429_LUNG	ARL15--NDUFS4	1	2	ARL15	3492	chr5:53467614:-	NDUFS4	20412	chr5:52978948:+	ONLY_REF_SPLICE	YES	197	1251	0.01	0	0.006	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	HCC2429_LUNG	0	0.01	0.0181	FALSE	0	0	0	2	0	FALSE	ACH-000143
HCC2429_LUNG	ARL15--NDUFS4	1	2	ARL15	3492	chr5:53467614:-	NDUFS4	19173	chr5:52954381:+	ONLY_REF_SPLICE	YES	197	2040	0.01	0	0.006	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	HCC2429_LUNG	0	0.01	0.0181	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	PROSC--CHMP1A	1	2	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	865	767	0	0	0.006	0.0121	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HCC2429_LUNG	0	0	0.0181	FALSE	13	55	3	29	0	FALSE	ACH-000143
HCC2429_LUNG	RP11-444A22.1--AC007131.2	1	2	RP11-444A22.1	3433	chr2:59739144:-	AC007131.2	21493	chr2:59468238:-	ONLY_REF_SPLICE	NO	0	4	1	0.43	0.006	0.0121	GTEx_FI:{Testis=[count:11=pct:10.5]},RP11-444A22.1->chr2:59445815-60327335:-,AC007131.2->chr2:59465851-59960531:-	HCC2429_LUNG	0.43	1	0.0181	TRUE	3	3	1	1	0	FALSE	ACH-000143
HCC2429_LUNG	AC005307.3--AC005616.1	1	1	AC005307.3	5855	chr19:29212861:-	AC005616.1	22332	chr19:28983930:-	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.006	0.006	AC005307.3->chr19:28926295-29218684:-,AC005616.1->chr19:28982771-29123635:-	HCC2429_LUNG	0.4	1	0.012	TRUE	0	2	0	3	2	TRUE	ACH-000143
HCC2429_LUNG	ASAP3--SLMO1	1	1	ASAP3	7824	chr1:23768679:-	SLMO1	26838	chr18:12421539:+	ONLY_REF_SPLICE	NO	175	75	0.01	0.03	0.006	0.006	ASAP3->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_3,chr1:23755056-23811061:-,SLMO1->chr18:12407895-12432237:+	HCC2429_LUNG	0.01	0.03	0.012	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	ATG10--SSBP2	1	1	ATG10	9773	chr5:81460356:+	SSBP2	24438	chr5:80946158:-	ONLY_REF_SPLICE	NO	246	832	0.01	0	0.006	0.006	ATG10->autophagy_related_10,chr5:81267844-81572676:+,SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2	HCC2429_LUNG	0	0.01	0.012	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	BCAS3--KNTC1	1	1	BCAS3	17446	chr17:58967132:+	KNTC1	105230	chr12:123093931:+	ONLY_REF_SPLICE	YES	319	245	0.01	0.01	0.006	0.006	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,KNTC1->chr12:123011793-123110943:+,kinetochore_associated_1	HCC2429_LUNG	0.01	0.01	0.012	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	CEP170--AKT3	1	1	CEP170	1309	chr1:243418342:-	AKT3	38804	chr1:244006584:-	ONLY_REF_SPLICE	NO	342	15	0.01	0.12	0.006	0.006	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3	HCC2429_LUNG	0.01	0.12	0.012	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	CNN2--PPP1R12C	1	1	CNN2	4331	chr19:1032695:+	PPP1R12C	21239	chr19:55607703:-	ONLY_REF_SPLICE	YES	1092	288	0	0.01	0.006	0.006	GTEx&tcga_normals:21/3694=0.57%,GTEx:0.19%,GTEx_FI:{Blood_Vessel=[count:54=pct:14.6],Esophagus=[count:40=pct:9.9],Colon=[count:27=pct:14.1],Stomach=[count:6=pct:6.7],Skin=[count:4=pct:1.3],Breast=[count:4=pct:3.6],Prostate=[count:3=pct:4.9],Spleen=[count:3=pct:2.7],Small_Intestine=[count:2=pct:3.6],Fallopian_Tube=[count:1=pct:16.7],Thyroid=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},GTEx_v2:{count=203;pct=2.35%;dist=Esophagus_-_Muscularis=42,Artery_-_Tibial=39,Colon_-_Sigmoid=21,Esophagus_-_Gastroesophageal_Junction=17,Artery_-_Aorta=13,Artery_-_Coronary=12,Colon_-_Transverse=9,Cells_-_Transformed_fibroblasts=7,Stomach=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Adipose_-_Subcutaneous=6,Breast_-_Mammary_Tissue=4,Nerve_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=2,Thyroid=2,Uterus=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Ovary=1,Pancreas=1,Lung=1,Vagina=1,Prostate=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Spleen=1,Bladder=1},CNN2->calponin_2,chr19:1026298-1039068:+,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	HCC2429_LUNG	0	0.01	0.012	FALSE	98	3	5	3	0	FALSE	ACH-000143
HCC2429_LUNG	FARP2--CMPK1	1	1	FARP2	2877	chr2:242312705:+	CMPK1	48645	chr1:47834141:+	ONLY_REF_SPLICE	YES	113	798	0.02	0	0.006	0.006	FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+,CMPK1->chr1:47799469-47844511:+,cytidine/uridine_monophosphate_kinase_1	HCC2429_LUNG	0	0.02	0.012	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	HNRNPA2B1--DAZAP1	1	1	HNRNPA2B1	6683	chr7:26235467:-	DAZAP1	23256	chr19:1425877:+	ONLY_REF_SPLICE	NO	6333	772	0	0	0.006	0.006	HGNC_GENEFAM,PROTCLUST,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	HCC2429_LUNG	0	0	0.012	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	KANSL1--ARL17B	1	1	KANSL1	9741	chr17:44171926:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	NO	78	4	0.03	0.33	0.006	0.006	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC2429_LUNG	0.03	0.33	0.012	TRUE	51	25	1	17	0	FALSE	ACH-000143
HCC2429_LUNG	MPPED1--ZNF131	1	1	MPPED1	9435	chr22:43870841:+	ZNF131	28476	chr5:43122146:+	ONLY_REF_SPLICE	NO	291	226	0.01	0.01	0.006	0.006	MPPED1->chr22:43807202-43903728:+,metallophosphoesterase_domain_containing_1,ZNF131->chr5:43065278-43192123:+,zinc_finger_protein_131	HCC2429_LUNG	0.01	0.01	0.012	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	PSPH--GBAS	1	1	PSPH	1467	chr7:56118831:-	GBAS	22080	chr7:56049903:+	ONLY_REF_SPLICE	YES	202	485	0.01	0	0.006	0.006	LOCAL_INVERSION:-:+:[10870],PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase,GBAS->chr7:56019486-56067874:+,glioblastoma_amplified_sequence	HCC2429_LUNG	0	0.01	0.012	FALSE	0	0	0	3	0	FALSE	ACH-000143
HCC2429_LUNG	RBFA--TXNL4A	1	1	RBFA	7178	chr18:77802219:+	TXNL4A	21356	chr18:77737701:-	ONLY_REF_SPLICE	YES	335	904	0.01	0	0.006	0.006	LOCAL_INVERSION:+:-:[409],RBFA->chr18:77794358-77806397:+,ribosome_binding_factor_A_(putative),TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A	HCC2429_LUNG	0	0.01	0.012	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	RP11-148L24.1--FBXO8	1	1	RP11-148L24.1	2706	chr4:175041048:-	FBXO8	13800	chr4:175184251:-	ONLY_REF_SPLICE	NO	69	521	0.03	0	0.006	0.006	LOCAL_REARRANGEMENT:-:[16260],RP11-148L24.1->chr4:175015811-175141549:-,FBXO8->F-box_protein_8,chr4:175157809-175205415:-	HCC2429_LUNG	0	0.03	0.012	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	RP11-255H23.2--IFT74	1	1	RP11-255H23.2	1191	chr19:23945936:+	IFT74	21975	chr9:27009018:+	ONLY_REF_SPLICE	YES	22	79	0.08	0.02	0.006	0.006	RP11-255H23.2->chr19:23945746-24016116:+,IFT74->chr9:26947037-27062928:+,intraflagellar_transport_74	HCC2429_LUNG	0.02	0.08	0.012	TRUE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	SLC25A12--HAT1	1	1	SLC25A12	5477	chr2:172749715:-	HAT1	39676	chr2:172841096:+	ONLY_REF_SPLICE	NO	21	1350	0.09	0	0.006	0.006	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Brain_-_Cerebellar_Hemisphere=1},NEIGHBORS_OVERLAP:-:+:[69641],SLC25A12->chr2:172640880-172864766:-,solute_carrier_family_25_member_12,HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1	HCC2429_LUNG	0	0.09	0.012	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	SMC5--EEF1D	1	1	SMC5	1243	chr9:72874179:+	EEF1D	40945	chr8:144669022:-	ONLY_REF_SPLICE	YES	234	950	0.01	0	0.006	0.006	SMC5->chr9:72873937-72969804:+,structural_maintenance_of_chromosomes_5,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HCC2429_LUNG	0	0.01	0.012	FALSE	0	0	0	1	0	FALSE	ACH-000143
HCC2429_LUNG	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.006	0.006	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC2429_LUNG	0.67	1	0.012	TRUE	62	24	1	171	0	FALSE	ACH-000143
HCC2429_LUNG	TP63--TPRG1	1	1	TP63	4502	chr3:189507631:+	TPRG1	55724	chr3:189038415:+	ONLY_REF_SPLICE	YES	498	314	0	0.01	0.006	0.006	TP63->chr3:189349205-189615068:+,tumor_protein_p63,TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1	HCC2429_LUNG	0	0.01	0.012	FALSE	0	4	0	3	0	FALSE	ACH-000143
HCC2429_LUNG	TP63--TPRG1	1	1	TP63	12987	chr3:189590784:+	TPRG1	49449	chr3:188956522:+	ONLY_REF_SPLICE	YES	1526	1	0	0.67	0.006	0.006	TP63->chr3:189349205-189615068:+,tumor_protein_p63,TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1	HCC2429_LUNG	0	0.67	0.012	FALSE	0	1	0	1	1	FALSE	ACH-000143
SF172_CENTRAL_NERVOUS_SYSTEM	NBEAL2--COMT	129	34	NBEAL2	1230	chr3:47021402:+	COMT	28264	chr22:19948722:+	ONLY_REF_SPLICE	YES	0	169	1	0.49	1.4155	0.3731	NBEAL2->chr3:47021173-47051193:+,neurobeachin_like_2,COMT->catechol-O-methyltransferase,chr22:19929130-19957498:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.49	1	1.7886	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	73	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.801	0.2743	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	1.0753	TRUE	508	994	45	981	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	SMARCC1--DHX30	53	63	SMARCC1	2624	chr3:47814307:-	DHX30	53594	chr3:47882367:+	ONLY_REF_SPLICE	YES	83	182	0.58	0.39	0.5815	0.6913	LOCAL_INVERSION:-:+:[20803],SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,DHX30->DEAH-box_helicase_30,chr3:47844399-47891685:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.39	0.58	1.2728	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	51	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5596	0.0439	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.6035	FALSE	462	80	0	856	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	UBE2R2--ACO1	48	15	UBE2R2	1368	chr9:33817932:+	ACO1	14260	chr9:32405483:+	ONLY_REF_SPLICE	YES	103	14	0.38	0.82	0.5267	0.1646	UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2,ACO1->aconitase_1,chr9:32384618-32454767:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.38	0.82	0.6913	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	LINC00152--AC093616.4	42	38	LINC00152	14196	chr2:87906288:+	AC093616.4	17233	chr2:88000503:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4608	0.417	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.8778	FALSE	0	0	0	14	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	40	23	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5	0	0.93	1	0.4389	0.2524	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.6913	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	TRUB2--RP11-1157N2__B.2	38	31	TRUB2	2144	chr9:131083878:-	RP11-1157N2__B.2	13380	chr18:14816475:-	INCL_NON_REF_SPLICE	YES	256	3	0.21	0.96	0.417	0.3402	TRUB2->TruB_pseudouridine_synthase_family_member_2,chr9:131071382-131085021:-,RP11-1157N2__B.2->chr18:14816150-14825248:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.21	0.96	0.7572	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	45	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	443	8	0.09	0.85	0.4938	0.011	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.09	0.85	0.5048	TRUE	519	3926	326	965	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	40	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4389	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.4389	TRUE	0	0	0	518	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	36	12	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5375	9	0.01	0.84	0.395	0.1317	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0.01	0.84	0.5267	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	INPP5B--SF3A3	28	11	INPP5B	29411	chr1:38329984:-	SF3A3	48547	chr1:38425847:-	ONLY_REF_SPLICE	YES	11	448	0.78	0.08	0.3072	0.1207	LOCAL_REARRANGEMENT:-:[9918],INPP5B->chr1:38326369-38412729:-,inositol_polyphosphate-5-phosphatase_B,SF3A3->chr1:38422647-38456593:-,splicing_factor_3a_subunit_3	SF172_CENTRAL_NERVOUS_SYSTEM	0.08	0.78	0.4279	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	PPP2R5E--CACFD1	21	12	PPP2R5E	2760	chr14:64006247:-	CACFD1	28563	chr9:136328605:+	ONLY_REF_SPLICE	YES	122	18	0.21	0.65	0.2304	0.1317	PPP2R5E->chr14:63838075-64010092:-,protein_phosphatase_2_regulatory_subunit_B',_epsilon,CACFD1->calcium_channel_flower_domain_containing_1,chr9:136325089-136335970:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.21	0.65	0.3621	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	19	9	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	126	4	0.18	0.88	0.2085	0.0988	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF172_CENTRAL_NERVOUS_SYSTEM	0.18	0.88	0.3073	FALSE	59	21	0	114	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	TRUB2--RP11-1157N2__B.2	12	33	TRUB2	2144	chr9:131083878:-	RP11-1157N2__B.2	13219	chr18:14816636:-	ONLY_REF_SPLICE	YES	256	0	0.15	1	0.1317	0.3621	TRUB2->TruB_pseudouridine_synthase_family_member_2,chr9:131071382-131085021:-,RP11-1157N2__B.2->chr18:14816150-14825248:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.4938	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	19	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2085	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.2085	TRUE	0	0	0	434	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	13	23	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	113	145	0.24	0.2	0.1426	0.2524	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SF172_CENTRAL_NERVOUS_SYSTEM	0.2	0.24	0.395	TRUE	267	562	48	632	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	12	26	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1317	0.2853	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.417	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	RP11-114H23.1--RP11-114H23.2	14	16	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	3	0	0.91	1	0.1536	0.1756	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.3292	FALSE	81	155	12	160	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	TNRC18--LDLR	18	0	TNRC18	27314	chr7:5365072:-	LDLR	63573	chr19:11243399:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1975	0	GTEx_FI:{Adrenal_Gland=[count:2=pct:2.4]},TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.1975	TRUE	1	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	16	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1756	0.0549	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.2305	FALSE	499	1288	110	792	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	TNRC18--LDLR	15	0	TNRC18	27328	chr7:5365058:-	LDLR	63586	chr19:11243412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1646	0	GTEx_FI:{Adrenal_Gland=[count:2=pct:2.4]},TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.1646	TRUE	1	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	14	2	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	8298	4	0	0.8	0.1536	0.0219	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0	0.8	0.1755	FALSE	41	30	6	102	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	TXNRD2--IGLV1-62	14	2	TXNRD2	13999	chr22:19882930:-	IGLV1-62	26596	chr22:22441127:+	ONLY_REF_SPLICE	YES	188	1	0.08	0.94	0.1536	0.0219	TXNRD2->chr22:19863040-19929341:-,thioredoxin_reductase_2,IGLV1-62->chr22:22440972-22441521:+,immunoglobulin_lambda_variable_1-62_(pseudogene)	SF172_CENTRAL_NERVOUS_SYSTEM	0.08	0.94	0.1755	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	12	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.83	1	0.1317	0.0878	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SF172_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.2195	FALSE	499	1288	110	792	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	PTBP3--SUSD1	11	12	PTBP3	1198	chr9:115095750:-	SUSD1	44040	chr9:114814718:-	ONLY_REF_SPLICE	YES	180	17	0.11	0.57	0.1207	0.1317	NEIGHBORS[43027],PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,SUSD1->chr9:114803065-114937688:-,sushi_domain_containing_1	SF172_CENTRAL_NERVOUS_SYSTEM	0.11	0.57	0.2524	FALSE	0	0	0	1	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	13	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	119	3	0.12	0.84	0.1426	0.0329	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF172_CENTRAL_NERVOUS_SYSTEM	0.12	0.84	0.1755	FALSE	59	21	0	114	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	AP000525.9--LA16c-60G3.6	12	5	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	18	0	0.49	1	0.1317	0.0549	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.49	1	0.1866	TRUE	0	42	0	133	42	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	10	13	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	7576	0	0	1	0.1097	0.1426	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0	1	0.2523	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	11	8	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7753	143	0	0.12	0.1207	0.0878	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0	0.12	0.2085	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	10	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.84	1	0.1097	0.1207	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.84	1	0.2304	FALSE	407	2205	196	549	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	11	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1207	0.0658	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.1865	FALSE	462	80	0	856	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND6	10	6	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	2	4973	0.89	0	0.1097	0.0658	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SF172_CENTRAL_NERVOUS_SYSTEM	0	0.89	0.1755	FALSE	26	124	4	93	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	4	26	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0.2853	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.3292	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	9	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0988	0.0658	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.1646	FALSE	499	1288	110	792	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND6	8	9	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0878	0.0988	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.1866	FALSE	26	124	4	93	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	SLC39A11--LINC00511	9	5	SLC39A11	18406	chr17:70732789:-	LINC00511	39209	chr17:70427365:-	ONLY_REF_SPLICE	YES	15	19	0.48	0.42	0.0988	0.0549	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	SF172_CENTRAL_NERVOUS_SYSTEM	0.42	0.48	0.1537	FALSE	0	4	0	2	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	3	28	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0329	0.3072	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.3401	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	SMARCC1--DHX30	3	27	SMARCC1	1504	chr3:47823093:-	DHX30	53594	chr3:47882367:+	ONLY_REF_SPLICE	YES	103	182	0.23	0.14	0.0329	0.2963	LOCAL_INVERSION:-:+:[20803],SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,DHX30->DEAH-box_helicase_30,chr3:47844399-47891685:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.14	0.23	0.3292	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	CTTNBP2NL--C12orf80	3	25	CTTNBP2NL	5077	chr1:112958886:+	C12orf80	22445	chr12:52599963:-	ONLY_REF_SPLICE	YES	55	13	0.34	0.68	0.0329	0.2743	CTTNBP2NL->CTTNBP2_N-terminal_like,chr1:112938803-113006078:+,C12orf80->chr12:52599368-52604639:-,chromosome_12_open_reading_frame_80	SF172_CENTRAL_NERVOUS_SYSTEM	0.34	0.68	0.3072	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	5	16	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	112	147	0.16	0.12	0.0549	0.1756	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SF172_CENTRAL_NERVOUS_SYSTEM	0.12	0.16	0.2305	TRUE	267	562	48	632	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	4	19	MT-ND5	2712	chrM:14048:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	YES	14	4	0.62	0.85	0.0439	0.2085	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0.62	0.85	0.2524	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	4	18	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8	9	0.73	0.71	0.0439	0.1975	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0.71	0.73	0.2414	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	3	22	MT-ND5	2644	chrM:13980:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	2537	0	0.01	1	0.0329	0.2414	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.2743	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	4	17	MT-ND5	2687	chrM:14023:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	905	9	0.02	0.7	0.0439	0.1865	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0.02	0.7	0.2304	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	3	21	MT-ND5	2873	chrM:14209:+	MT-ATP8	5910	chrM:8463:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.86	0.0329	0.2304	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.2633	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0.1865	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.2304	FALSE	499	1288	110	792	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	CTTNBP2NL--C12orf80	1	28	CTTNBP2NL	5077	chr1:112958886:+	C12orf80	21981	chr12:52600427:-	ONLY_REF_SPLICE	YES	55	4	0.35	0.88	0.011	0.3072	CTTNBP2NL->CTTNBP2_N-terminal_like,chr1:112938803-113006078:+,C12orf80->chr12:52599368-52604639:-,chromosome_12_open_reading_frame_80	SF172_CENTRAL_NERVOUS_SYSTEM	0.35	0.88	0.3182	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	ZNF350--DCP1A	8	0	ZNF350	1087	chr19:52490023:-	DCP1A	22905	chr3:53326857:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0878	0	ZNF350->chr19:52467596-52490109:-,zinc_finger_protein_350,DCP1A->chr3:53317447-53381654:-,decapping_mRNA_1A	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0878	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	7	3	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	101	3	0.09	0.77	0.0768	0.0329	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF172_CENTRAL_NERVOUS_SYSTEM	0.09	0.77	0.1097	FALSE	59	21	0	114	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	4	15	MT-ATP6	1408	chrM:8934:+	MT-CO2	4720	chrM:7624:+	INCL_NON_REF_SPLICE	NO	102	0	0.16	1	0.0439	0.1646	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF172_CENTRAL_NERVOUS_SYSTEM	0.16	1	0.2085	FALSE	59	21	0	114	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	6	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0658	0.0768	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.1426	FALSE	462	80	0	856	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	TRUB2--RP11-1157N2__B.2	4	15	TRUB2	1443	chr9:131084579:-	RP11-1157N2__B.2	13380	chr18:14816475:-	INCL_NON_REF_SPLICE	YES	154	3	0.11	0.86	0.0439	0.1646	TRUB2->TruB_pseudouridine_synthase_family_member_2,chr9:131071382-131085021:-,RP11-1157N2__B.2->chr18:14816150-14825248:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.11	0.86	0.2085	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	3	18	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8	143	0.72	0.13	0.0329	0.1975	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0.13	0.72	0.2304	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	LINC00152--AC093616.4	3	15	LINC00152	1278	chr2:87755164:+	AC093616.4	17233	chr2:88000503:+	ONLY_REF_SPLICE	YES	950	0	0.02	1	0.0329	0.1646	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.1975	FALSE	0	0	0	11	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	3	14	MT-ND5	2641	chrM:13977:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	2714	1084	0.01	0.02	0.0329	0.1536	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.1865	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	4	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.0439	0.1097	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.1536	FALSE	467	2173	244	435	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	4	9	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	126	3	0.09	0.81	0.0439	0.0988	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF172_CENTRAL_NERVOUS_SYSTEM	0.09	0.81	0.1427	FALSE	59	21	0	114	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	4	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	1	0.76	0.93	0.0439	0.0988	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.76	0.93	0.1427	FALSE	515	4851	409	746	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	5	4	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	12384	3	0	0.75	0.0549	0.0439	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SF172_CENTRAL_NERVOUS_SYSTEM	0	0.75	0.0988	FALSE	1	0	0	97	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	3	12	MT-ND5	2449	chrM:13785:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4303	143	0	0.09	0.0329	0.1317	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0	0.09	0.1646	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	5	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	58	3	0.12	0.73	0.0549	0.0329	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF172_CENTRAL_NERVOUS_SYSTEM	0.12	0.73	0.0878	FALSE	59	21	0	114	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	4	6	MT-ND5	1846	chrM:13182:+	MT-ATP8	5879	chrM:8432:+	INCL_NON_REF_SPLICE	YES	6297	0	0	1	0.0439	0.0658	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0	1	0.1097	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	5	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.44	1	0.0549	0.0219	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.44	1	0.0768	FALSE	125	705	46	456	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	5	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	27	1	0.21	0.0549	0.0219	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.21	1	0.0768	TRUE	465	1949	224	605	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	SLC39A11--LINC00511	5	2	SLC39A11	18406	chr17:70732789:-	LINC00511	40306	chr17:70424439:-	ONLY_REF_SPLICE	YES	15	17	0.32	0.29	0.0549	0.0219	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	SF172_CENTRAL_NERVOUS_SYSTEM	0.29	0.32	0.0768	FALSE	0	1	0	2	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	ROCK2--AC099344.2	4	5	ROCK2	2753	chr2:11484122:-	AC099344.2	39593	chr2:11498162:-	ONLY_REF_SPLICE	YES	17	1	0.35	0.9	0.0439	0.0549	LOCAL_REARRANGEMENT:-:[9185],ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,AC099344.2->chr2:11497641-11505762:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.35	0.9	0.0988	TRUE	0	0	0	2	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	TGM2--KRT8	4	5	TGM2	18623	chr20:36758603:-	KRT8	28744	chr12:53298552:-	INCL_NON_REF_SPLICE	YES	4687	14811	0	0	0.0439	0.0549	TGM2->chr20:36756863-36794980:-,transglutaminase_2,KRT8->chr12:53290977-53343738:-,keratin_8	SF172_CENTRAL_NERVOUS_SYSTEM	0	0	0.0988	FALSE	0	0	0	1	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	GPHN--EGLN3	4	4	GPHN	19568	chr14:67490392:+	EGLN3	57627	chr14:34400421:-	ONLY_REF_SPLICE	YES	31	1	0.21	0.89	0.0439	0.0439	GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,EGLN3->chr14:34393437-34931980:-,egl-9_family_hypoxia_inducible_factor_3	SF172_CENTRAL_NERVOUS_SYSTEM	0.21	0.89	0.0878	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	5	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0549	FALSE	59	21	0	114	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0549	TRUE	0	0	0	434	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	RP11-114H23.1--RP11-114H23.2	1	16	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	NO	3	0	0.85	1	0.011	0.1756	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.85	1	0.1866	FALSE	5	9	0	20	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	ZNF615--NLRP9	5	0	ZNF615	1090	chr19:52511394:-	NLRP9	19343	chr19:56235510:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0549	0	ZNF615->chr19:52494585-52511483:-,zinc_finger_protein_615,NLRP9->NLR_family,_pyrin_domain_containing_9,chr19:56219798-56249768:-	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0549	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	ZNF615--NLRP9	5	0	ZNF615	1090	chr19:52511394:-	NLRP9	14274	chr19:56249815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	ZNF615->chr19:52494585-52511483:-,zinc_finger_protein_615,NLRP9->NLR_family,_pyrin_domain_containing_9,chr19:56219798-56249768:-	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0549	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	4	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	58	3	0.11	0.7	0.0439	0.0329	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF172_CENTRAL_NERVOUS_SYSTEM	0.11	0.7	0.0768	FALSE	59	21	0	114	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	3	7	MT-ND5	1770	chrM:13106:+	MT-ATP8	5861	chrM:8414:+	INCL_NON_REF_SPLICE	YES	5070	0	0	1	0.0329	0.0768	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0	1	0.1097	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	3	7	MT-ND5	1733	chrM:13069:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	5110	0	0	1	0.0329	0.0768	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0	1	0.1097	FALSE	43	37	8	105	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MYH9--MT2A	4	3	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	787	8	0.01	0.47	0.0439	0.0329	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SF172_CENTRAL_NERVOUS_SYSTEM	0.01	0.47	0.0768	FALSE	0	0	0	24	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0439	0.011	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0549	FALSE	292	1546	117	613	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0439	FALSE	499	1288	110	792	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0439	TRUE	0	0	0	434	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	SDF4--CPSF3L	4	0	SDF4	1140	chr1:1167272:-	CPSF3L	22389	chr1:1250998:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0439	0	LOCAL_REARRANGEMENT:-:[79554],SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,CPSF3L->chr1:1246965-1260071:-,cleavage_and_polyadenylation_specific_factor_3-like	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0439	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	AC002066.1--AC073130.1	2	7	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	15	0	0.38	1	0.0219	0.0768	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.0987	FALSE	0	1	1	30	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	3	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	108	3	0.05	0.67	0.0329	0.0329	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF172_CENTRAL_NERVOUS_SYSTEM	0.05	0.67	0.0658	FALSE	59	21	0	114	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	3	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	99	3	0.06	0.67	0.0329	0.0329	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF172_CENTRAL_NERVOUS_SYSTEM	0.06	0.67	0.0658	FALSE	59	21	0	114	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	3	MT-ATP6	1135	chrM:8661:+	MT-CO2	4824	chrM:7728:+	INCL_NON_REF_SPLICE	YES	115	3	0.05	0.67	0.0329	0.0329	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF172_CENTRAL_NERVOUS_SYSTEM	0.05	0.67	0.0658	FALSE	59	21	0	114	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	3	MT-ATP6	1169	chrM:8695:+	MT-CO2	4981	chrM:7885:+	INCL_NON_REF_SPLICE	YES	133	6	0.04	0.5	0.0329	0.0329	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF172_CENTRAL_NERVOUS_SYSTEM	0.04	0.5	0.0658	FALSE	59	21	0	114	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	3	3	MT-ND5	1645	chrM:12981:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	6288	1084	0	0.01	0.0329	0.0329	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF172_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0658	FALSE	42	36	7	104	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	FTH1--CSTB	3	2	FTH1	1226	chr11:61734907:-	CSTB	8340	chr21:45196162:-	INCL_NON_REF_SPLICE	YES	12242	92	0	0.05	0.0329	0.0219	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Esophagus=[count:2=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Esophagus_-_Mucosa=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,CSTB->Oncogene{Bushman},chr21:45192393-45196326:-,cystatin_B	SF172_CENTRAL_NERVOUS_SYSTEM	0	0.05	0.0548	FALSE	1	0	0	2	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MB21D2--FGF12	3	2	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	69	0	0.07	1	0.0329	0.0219	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	SF172_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.0548	FALSE	0	17	0	46	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	3	2	XXbac-BPG252P9.9	1179	chr6:30691476:-	TUBBP2	4914	chr13:41959179:-	INCL_NON_REF_SPLICE	YES	4045	0	0	1	0.0329	0.0219	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SF172_CENTRAL_NERVOUS_SYSTEM	0	1	0.0548	FALSE	0	1	0	48	1	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	3	2	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	NO	4025	0	0	1	0.0329	0.0219	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SF172_CENTRAL_NERVOUS_SYSTEM	0	1	0.0548	FALSE	0	1	0	48	1	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	AP000525.9--LA16c-60G3.6	3	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	18	0	0.18	1	0.0329	0.011	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.18	1	0.0439	TRUE	0	5	0	18	5	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	3	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	169	1	0.02	0.0329	0.011	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0439	TRUE	347	1186	183	220	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	SERF2--CTD-2192J16.22	3	1	SERF2	6109	chr15:44085993:+	CTD-2192J16.22	19016	chr19:12754774:-	INCL_NON_REF_SPLICE	YES	1750	0	0	1	0.0329	0.011	SERF2->chr15:44069285-44094787:+,small_EDRK-rich_factor_2,CTD-2192J16.22->chr19:12754645-12759211:-	SF172_CENTRAL_NERVOUS_SYSTEM	0	1	0.0439	FALSE	0	0	0	2	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	CTTNBP2NL--LINC00592	2	2	CTTNBP2NL	5077	chr1:112958886:+	LINC00592	22703	chr12:52617230:+	ONLY_REF_SPLICE	YES	55	0	0.07	1	0.0219	0.0219	CTTNBP2NL->CTTNBP2_N-terminal_like,chr1:112938803-113006078:+,LINC00592->chr12:52604714-52617588:+,long_intergenic_non-protein_coding_RNA_592	SF172_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.31	1	0.0219	0.0219	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.0438	FALSE	164	806	69	479	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	AC002066.1--AC073130.1	1	5	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	NO	12	0	0.33	1	0.011	0.0549	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.0659	FALSE	0	3	0	33	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	CTC-228N24.2--CTC-228N24.3	2	1	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	0	44	1	0.06	0.0219	0.011	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0329	TRUE	0	1	0	12	1	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	DHX30--RP11-875H7.5	1	5	DHX30	13411	chr3:47870624:+	RP11-875H7.5	29083	chr3:55531505:-	ONLY_REF_SPLICE	NO	181	0	0.03	1	0.011	0.0549	DHX30->DEAH-box_helicase_30,chr3:47844399-47891685:+,RP11-875H7.5->chr3:55527858-55539289:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0659	TRUE	0	0	0	1	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	FOXN2--HNRNPH3	2	0	FOXN2	1178	chr2:48541953:+	HNRNPH3	17937	chr10:70096956:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	FOXN2->chr2:48541776-48606433:+,forkhead_box_N2,HNRNPH3->chr10:70090931-70102948:+,heterogeneous_nuclear_ribonucleoprotein_H3	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	GPHN--EGLN3	2	0	GPHN	15291	chr14:67391009:+	EGLN3	57627	chr14:34400421:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,EGLN3->chr14:34393437-34931980:-,egl-9_family_hypoxia_inducible_factor_3	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	HIF1A--GET4	2	0	HIF1A	1327	chr14:62162557:+	GET4	27825	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	HNRNPH1--HNRNPAB	2	0	HNRNPH1	3968	chr5:179050596:-	HNRNPAB	17721	chr5:177632843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	HGNC_GENEFAM,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),HNRNPAB->chr5:177631508-177638164:+,heterogeneous_nuclear_ribonucleoprotein_A/B	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	MYCBP2--FUS	2	0	MYCBP2	18252	chr13:77817194:-	FUS	103848	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	MYCBP2->MYC_binding_protein_2,_E3_ubiquitin_protein_ligase,chr13:77618792-77901185:-,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	PARPBP--HMGA2	2	0	PARPBP	1109	chr12:102514064:+	HMGA2	26561	chr12:66232299:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	PARPBP->PARP1_binding_protein,chr12:102513956-102591298:+,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	PECR--XRCC5	2	0	PECR	2338	chr2:216946341:-	XRCC5	39013	chr2:217054948:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	LOCAL_INVERSION:-:+:[24509],PECR->chr2:216861052-216947678:-,peroxisomal_trans-2-enoyl-CoA_reductase,XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	POT1--HSBP1L1	2	0	POT1	2169	chr7:124568869:-	HSBP1L1	32872	chr18:77730440:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	POT1->chr7:124462440-124570037:-,protection_of_telomeres_1,HSBP1L1->chr18:77724561-77730822:+,heat_shock_factor_binding_protein_1-like_1	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	RP11-463D19.2--TCEB1	2	0	RP11-463D19.2	1047	chr8:74791043:-	TCEB1	16412	chr8:74872053:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	LOCAL_REARRANGEMENT:-:[60315],RP11-463D19.2->chr8:74600926-74791089:-,TCEB1->chr8:74851404-74884522:-,transcription_elongation_factor_B_subunit_1	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	1	0	0	2	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	RPL37A--XRCC5	2	0	RPL37A	2843	chr2:217364754:+	XRCC5	32563	chr2:217024791:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	GTEx&tcga_normals:1/3694=0.03%,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a,XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	2	0	1	1	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	RPL39L--EPHA6	2	0	RPL39L	4679	chr3:186845787:-	EPHA6	10489	chr3:96585669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	RPL39L->chr3:186838736-186898696:-,ribosomal_protein_L39_like,EPHA6->EPH_receptor_A6,chr3:96533425-97471304:+	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	SMEK2--ERBB2	2	0	SMEK2	6792	chr2:55831114:-	ERBB2	48952	chr17:37880979:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	SMEK2->chr2:55774428-55846015:-,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	ZNF37BP--GTF2I	2	0	ZNF37BP	4387	chr10:43020988:-	GTF2I	20212	chr7:74103458:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	ZNF37BP->chr10:43008958-43048270:-,zinc_finger_protein_37B,_pseudogene,GTF2I->chr7:74071994-74175026:+,general_transcription_factor_IIi	SF172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	1	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	14	1	0.22	0.011	0.0329	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.22	1	0.0439	TRUE	458	1351	185	561	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	INPP5B--SF3A3	1	2	INPP5B	26179	chr1:38334173:-	SF3A3	49603	chr1:38423935:-	ONLY_REF_SPLICE	YES	33	336	0.08	0.01	0.011	0.0219	LOCAL_REARRANGEMENT:-:[9918],INPP5B->chr1:38326369-38412729:-,inositol_polyphosphate-5-phosphatase_B,SF3A3->chr1:38422647-38456593:-,splicing_factor_3a_subunit_3	SF172_CENTRAL_NERVOUS_SYSTEM	0.01	0.08	0.0329	FALSE	0	0	0	1	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	ASAP1--GNAS	1	1	ASAP1	3357	chr8:131414131:-	GNAS	63485	chr20:57470667:+	ONLY_REF_SPLICE	NO	110	753	0.02	0	0.011	0.011	ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SF172_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	ATF6B--RP1-150O5.3	1	1	ATF6B	4790	chr6:32088548:-	RP1-150O5.3	15480	chr1:23875934:-	ONLY_REF_SPLICE	NO	205	0	0.01	1	0.011	0.011	ATF6B->activating_transcription_factor_6_beta,chr6:32065953-32096030:-,RP1-150O5.3->chr1:23875630-23877406:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	DEPDC1B--PSMB1	1	1	DEPDC1B	4088	chr5:59982789:-	PSMB1	22460	chr6:170858201:-	ONLY_REF_SPLICE	NO	327	2767	0.01	0	0.011	0.011	DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	SF172_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	LOXL2--TULP3	1	1	LOXL2	9046	chr8:23198505:-	TULP3	29101	chr12:3018695:+	ONLY_REF_SPLICE	YES	170	10	0.01	0.17	0.011	0.011	LOXL2->Oncogene{Bushman},chr8:23154702-23282841:-,lysyl_oxidase_like_2,TULP3->chr12:2986389-3050306:+,tubby_like_protein_3	SF172_CENTRAL_NERVOUS_SYSTEM	0.01	0.17	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	LSG1--GLYCTK	1	1	LSG1	2722	chr3:194390738:-	GLYCTK	22892	chr3:52324976:+	ONLY_REF_SPLICE	YES	225	24	0.01	0.08	0.011	0.011	LSG1->chr3:194361517-194393206:-,large_60S_subunit_nuclear_export_GTPase_1,GLYCTK->chr3:52321105-52329272:+,glycerate_kinase	SF172_CENTRAL_NERVOUS_SYSTEM	0.01	0.08	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	NT5DC4--RP11-286N22.8	1	1	NT5DC4	7877	chr2:113487281:+	RP11-286N22.8	17037	chr11:61205097:+	ONLY_REF_SPLICE	NO	215	21	0.01	0.09	0.011	0.011	NT5DC4->5'-nucleotidase_domain_containing_4,chr2:113479063-113500456:+,RP11-286N22.8->chr11:61196692-61253294:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.01	0.09	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	PRRC2C--ANKLE2	1	1	PRRC2C	10380	chr1:171491398:+	ANKLE2	53233	chr12:133331719:-	ONLY_REF_SPLICE	NO	44	94	0.04	0.02	0.011	0.011	PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	SF172_CENTRAL_NERVOUS_SYSTEM	0.02	0.04	0.022	TRUE	0	0	0	1	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	THBS1--GNAS	1	1	THBS1	1150	chr15:39873429:+	GNAS	38178	chr20:57470667:+	ONLY_REF_SPLICE	YES	369	753	0.01	0	0.011	0.011	THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SF172_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	TXNRD1--NFYB	1	1	TXNRD1	11664	chr12:104682818:+	NFYB	36515	chr12:104529310:-	ONLY_REF_SPLICE	YES	2194	60	0	0.03	0.011	0.011	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:+:-:[77490],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	SF172_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.022	FALSE	0	0	0	6	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	UGGT2--DNAJC3	1	1	UGGT2	16543	chr13:96622366:-	DNAJC3	53204	chr13:96409898:+	ONLY_REF_SPLICE	YES	30	87	0.06	0.02	0.011	0.011	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Thyroid=1,Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:-:+:[6591],UGGT2->UDP-glucose_glycoprotein_glucosyltransferase_2,chr13:96453834-96705736:-,DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+	SF172_CENTRAL_NERVOUS_SYSTEM	0.02	0.06	0.022	TRUE	0	0	0	1	0	FALSE	ACH-000887
SF172_CENTRAL_NERVOUS_SYSTEM	ZCCHC10--HSPA4	1	1	ZCCHC10	5614	chr5:132342451:-	HSPA4	13947	chr5:132400672:+	ONLY_REF_SPLICE	NO	117	651	0.02	0	0.011	0.011	LOCAL_INVERSION:-:+:[25358],ZCCHC10->chr5:132332677-132362296:-,zinc_finger_CCHC-type_containing_10,HSPA4->chr5:132387654-132442141:+,heat_shock_protein_family_A_(Hsp70)_member_4	SF172_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000887
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	132	41	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4877	0.4621	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	1.9498	TRUE	508	994	45	981	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	59	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	350	8	0.15	0.89	0.665	0.0564	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.15	0.89	0.7214	TRUE	519	3926	326	965	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	39	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4395	0.0451	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.4846	FALSE	462	80	0	856	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	COL1A1--FN1	5	110	COL1A1	16937	chr17:48262838:-	FN1	29198	chr2:216289960:-	INCL_NON_REF_SPLICE	YES	1680	10529	0.06	0.01	0.0564	1.2397	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.01	0.06	1.2961	TRUE	0	0	0	1	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	29	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3268	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.3268	TRUE	7	10	0	216	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	24	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8510	23280	0	0	0.2705	0.0113	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.2818	FALSE	183	104	9	328	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	18	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	25	1	0.48	0.2029	0.0564	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.48	1	0.2593	TRUE	465	1949	224	605	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	COL1A1--FN1	4	60	COL1A1	15650	chr17:48264125:-	FN1	58080	chr2:216243979:-	INCL_NON_REF_SPLICE	YES	5771	15947	0.01	0	0.0451	0.6762	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.7213	TRUE	0	0	0	18	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	17	1	FTH1	1222	chr11:61734911:-	ACTB	12534	chr7:5569289:-	INCL_NON_REF_SPLICE	YES	3990	141	0	0.11	0.1916	0.0113	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0.11	0.2029	TRUE	1	0	0	97	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	PDE6B--PPP2R2D	17	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1916	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.1916	TRUE	7	65	3	22	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	SOCS4--TERT	7	23	SOCS4	1467	chr14:55494414:+	TERT	13836	chr5:1294547:-	INCL_NON_REF_SPLICE	YES	88	920	0.25	0.03	0.0789	0.2592	SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.03	0.25	0.3381	TRUE	0	0	0	1	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	SOCS4--TERT	9	13	SOCS4	1467	chr14:55494414:+	TERT	25976	chr5:1260682:-	INCL_NON_REF_SPLICE	YES	88	1197	0.2	0.02	0.1014	0.1465	SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.02	0.2	0.2479	TRUE	0	0	0	1	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	12	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1352	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.1352	FALSE	63	17	1	58	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	SOCS4--TERT	5	27	SOCS4	1467	chr14:55494414:+	TERT	13611	chr5:1294772:-	INCL_NON_REF_SPLICE	YES	88	221	0.27	0.13	0.0564	0.3043	SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.13	0.27	0.3607	TRUE	0	0	0	1	0	TRUE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	10	4	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	9863	0	0	1	0.1127	0.0451	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	1	0.1578	FALSE	63	17	1	58	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-CO1	9	4	MT-CO3	1220	chrM:9426:+	MT-CO1	5438	chrM:6557:+	INCL_NON_REF_SPLICE	YES	9614	23695	0	0	0.1014	0.0451	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1762],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.1465	FALSE	4	27	0	4	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MYH9--MT2A	8	8	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	2031	14	0.01	0.53	0.0902	0.0902	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.01	0.53	0.1804	TRUE	0	0	0	24	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2591	0	0	1	0.1014	0.0113	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	1	0.1127	FALSE	13	9	0	364	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	9	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	8429	22452	0	0	0.1014	0.0113	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.1127	FALSE	183	104	9	328	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	8	4	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	147	0	0.08	1	0.0902	0.0451	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.1353	FALSE	56	216	12	147	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	7	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.82	0.0789	0.0789	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.82	1	0.1578	TRUE	458	1351	185	561	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	8	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	4038	3	0	0.77	0.0902	0.0225	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0.77	0.1127	TRUE	1	0	0	97	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-CO1--MT-ND1	7	6	MT-CO1	1653	chrM:6556:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	23564	6612	0	0	0.0789	0.0676	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.1465	FALSE	39	30	6	19	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	8	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	0	0.67	1	0.0902	0.0225	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.1127	FALSE	515	4851	409	746	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	DBN1--MT-ATP8	8	1	DBN1	10885	chr5:176885413:-	MT-ATP8	15811	chrM:8487:+	INCL_NON_REF_SPLICE	YES	672	772	0.01	0.01	0.0902	0.0113	DBN1->Oncogene{Bushman},chr5:176883609-176901402:-,drebrin_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.1015	FALSE	0	0	0	1	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	8	1	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	YES	4273	17939	0	0	0.0902	0.0113	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.1015	FALSE	183	104	9	328	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	VIM--TMSB4X	8	1	VIM	2162	chr10:17271419:+	TMSB4X	13357	chrX:12994379:+	INCL_NON_REF_SPLICE	YES	9400	77	0	0.1	0.0902	0.0113	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0.1	0.1015	TRUE	0	0	0	15	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	SOCS4--TERT	8	0	SOCS4	1467	chr14:55494414:+	TERT	29148	chr5:1254510:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0902	0	SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0902	TRUE	0	0	0	1	0	TRUE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	COL1A1--FN1	4	15	COL1A1	7831	chr17:48271944:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	5643	18427	0	0	0.0451	0.1691	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.2142	TRUE	0	0	0	14	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-CO1--MT-ND1	7	2	MT-CO1	1324	chrM:6227:+	MT-ND1	5558	chrM:3322:+	INCL_NON_REF_SPLICE	YES	19952	0	0	1	0.0789	0.0225	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	1	0.1014	FALSE	39	29	6	19	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	SOCS4--TERT	3	18	SOCS4	1467	chr14:55494414:+	TERT	20287	chr5:1272344:-	INCL_NON_REF_SPLICE	YES	88	2218	0.19	0.01	0.0338	0.2029	SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.01	0.19	0.2367	TRUE	0	0	0	1	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	7	0	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0789	FALSE	63	17	1	58	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	6	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0676	0.0451	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.1127	FALSE	462	80	0	856	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	VIM--MT-ATP8	7	0	VIM	2188	chr10:17271445:+	MT-ATP8	12272	chrM:8433:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0	VIM->chr10:17270258-17279592:+,vimentin,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0789	FALSE	0	0	0	2	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	EEF2--MT2A	5	7	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	2277	14	0.01	0.46	0.0564	0.0789	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.01	0.46	0.1353	TRUE	1	0	0	19	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	6	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0676	0.0225	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.0901	FALSE	292	1546	117	613	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MYH9--MT2A	4	9	MYH9	40281	chr22:36678639:-	MT2A	45018	chr16:56642535:+	INCL_NON_REF_SPLICE	YES	2046	13	0.01	0.5	0.0451	0.1014	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.01	0.5	0.1465	TRUE	0	0	0	24	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	ANPEP--MT-ND4L	5	4	ANPEP	16060	chr15:90328379:-	MT-ND4L	19321	chrM:10471:+	INCL_NON_REF_SPLICE	YES	595	0	0.01	1	0.0564	0.0451	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.1015	FALSE	0	1	0	16	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	REV3L--RPL28	6	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0676	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0676	TRUE	22	156	2	142	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	5	3	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	9507	5242	0	0	0.0564	0.0338	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.0902	FALSE	63	17	1	58	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-CO1--MT-ND1	5	3	MT-CO1	1577	chrM:6480:+	MT-ND1	5559	chrM:3323:+	INCL_NON_REF_SPLICE	YES	20195	0	0	1	0.0564	0.0338	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	1	0.0902	FALSE	39	30	6	19	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	FBLN1--MTND2P28	5	2	FBLN1	25922	chr22:45970499:+	MTND2P28	33117	chr1:565050:+	INCL_NON_REF_SPLICE	YES	1058	0	0.01	1	0.0564	0.0225	FBLN1->Oncogene{Bushman},chr22:45898118-45997015:+,fibulin_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0789	FALSE	0	0	0	2	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	FN1--MT-ND5	5	2	FN1	14729	chr2:216279628:-	MT-ND5	55653	chrM:13054:+	INCL_NON_REF_SPLICE	YES	13952	4019	0	0	0.0564	0.0225	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.0789	FALSE	0	0	0	2	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	8547	0	0	1	0.0564	0.0113	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	1	0.0677	FALSE	63	17	1	58	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-CO1--MT-ND1	4	5	MT-CO1	1653	chrM:6556:+	MT-ND1	5761	chrM:3525:+	INCL_NON_REF_SPLICE	YES	23564	6738	0	0	0.0451	0.0564	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.1015	FALSE	39	30	6	19	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	4	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0.0564	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.1015	FALSE	462	80	0	856	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	5	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0564	0.0113	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0677	FALSE	416	2512	207	587	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	RP11-155G15.2--RP11-1E3.1	5	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0564	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0564	FALSE	46	201	11	112	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	VIM--MT-ATP8	5	0	VIM	2101	chr10:17271358:+	MT-ATP8	12320	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0564	0	VIM->chr10:17270258-17279592:+,vimentin,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0564	FALSE	0	0	0	2	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	5	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0564	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0564	TRUE	0	1	0	48	1	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-CO1--MT-ND1	3	7	MT-CO1	1642	chrM:6545:+	MT-ND1	5558	chrM:3322:+	INCL_NON_REF_SPLICE	YES	22696	0	0	1	0.0338	0.0789	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	1	0.1127	FALSE	39	30	6	19	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	6	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2744	23695	0	0	0.0338	0.0676	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.1014	FALSE	183	104	9	328	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	FBN1--LTBP2	4	1	FBN1	50981	chr15:48737573:-	LTBP2	93127	chr14:74983644:-	ONLY_REF_SPLICE	NO	1173	1214	0	0	0.0451	0.0113	PROTCLUST,FBN1->chr15:48700503-48938046:-,fibrillin_1,LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.0564	FALSE	0	0	0	1	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-CO1--MT-ND1	4	1	MT-CO1	1585	chrM:6488:+	MT-ND1	6056	chrM:3820:+	INCL_NON_REF_SPLICE	YES	19642	8010	0	0	0.0451	0.0113	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.0564	FALSE	39	30	6	19	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	CTGF--ACTB	3	4	CTGF	1204	chr6:132272310:-	ACTB	10614	chr7:5570232:-	INCL_NON_REF_SPLICE	YES	16	3	0.3	0.7	0.0338	0.0451	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.3	0.7	0.0789	TRUE	0	0	0	9	0	TRUE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	3	4	MT-ATP6	1200	chrM:8726:+	MT-RNR2	4726	chrM:1715:+	INCL_NON_REF_SPLICE	YES	12197	0	0	1	0.0338	0.0451	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	1	0.0789	FALSE	63	17	1	58	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	3	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0.0451	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0789	TRUE	477	1352	189	275	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	RP4-565E6.1--HYDIN	4	0	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0451	0	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0451	TRUE	456	1387	91	133	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	VIM--MT-ATP8	4	0	VIM	2168	chr10:17271425:+	MT-ATP8	12326	chrM:8487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	VIM->chr10:17270258-17279592:+,vimentin,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0451	FALSE	0	0	0	2	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	VIM--TAGLN2	4	0	VIM	2147	chr10:17271404:+	TAGLN2	15516	chr1:159890313:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	VIM->chr10:17270258-17279592:+,vimentin,TAGLN2->chr1:159887897-159895522:-,transgelin_2	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0451	TRUE	0	0	0	2	0	TRUE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	3	3	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	147	1	0.04	0.0338	0.0338	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0676	TRUE	347	1186	183	220	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-CO1--MT-ND1	3	3	MT-CO1	1585	chrM:6488:+	MT-ND1	5567	chrM:3331:+	INCL_NON_REF_SPLICE	YES	19642	0	0	1	0.0338	0.0338	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	1	0.0676	FALSE	39	30	6	19	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	3	2	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	4042	2	0	0.71	0.0338	0.0225	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0.71	0.0563	FALSE	1	0	0	97	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1158	chrM:8684:+	MT-RNR2	5294	chrM:2283:+	INCL_NON_REF_SPLICE	YES	10360	5583	0	0	0.0338	0.0225	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.0563	FALSE	63	17	1	58	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-CO2--MT-ND2	3	2	MT-CO2	1274	chrM:7859:+	MT-ND2	4917	chrM:4702:+	INCL_NON_REF_SPLICE	YES	14789	8373	0	0	0.0338	0.0225	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.0563	FALSE	105	46	5	21	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	DBN1--MT-ATP8	3	1	DBN1	10170	chr5:176886128:-	MT-ATP8	15784	chrM:8460:+	INCL_NON_REF_SPLICE	YES	890	1	0	0.8	0.0338	0.0113	DBN1->Oncogene{Bushman},chr5:176883609-176901402:-,drebrin_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0.8	0.0451	FALSE	0	0	0	1	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	3	1	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	3782	1	0	0.8	0.0338	0.0113	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0.8	0.0451	FALSE	1	0	0	97	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8530	22949	0	0	0.0338	0.0113	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.0451	FALSE	183	104	9	328	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-CO2--MT-ND2	3	1	MT-CO2	1238	chrM:7823:+	MT-ND2	5364	chrM:5149:+	INCL_NON_REF_SPLICE	YES	14726	7043	0	0	0.0338	0.0113	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.0451	FALSE	105	46	5	21	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-CO2--MT-ND2	3	1	MT-CO2	1280	chrM:7865:+	MT-ND2	5408	chrM:5193:+	INCL_NON_REF_SPLICE	YES	14967	6621	0	0	0.0338	0.0113	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.0451	FALSE	105	46	5	21	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	3	1	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0.0113	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0451	FALSE	462	80	0	856	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	VASN--MT2A	3	1	VASN	3839	chr16:4432562:+	MT2A	8192	chr16:56642496:+	INCL_NON_REF_SPLICE	YES	176	16	0.02	0.2	0.0338	0.0113	VASN->chr16:4421849-4433529:+,vasorin,MT2A->chr16:56642111-56643409:+,metallothionein_2A	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.02	0.2	0.0451	TRUE	0	0	0	1	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0338	FALSE	63	17	1	58	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0338	FALSE	63	17	1	58	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-CO2--MT-ND2	3	0	MT-CO2	1301	chrM:7886:+	MT-ND2	5531	chrM:5316:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0338	FALSE	105	46	5	21	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-CO2--MT-ND2	3	0	MT-CO2	1276	chrM:7861:+	MT-ND2	5541	chrM:5326:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0338	FALSE	105	46	5	21	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0338	FALSE	462	80	0	856	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0338	TRUE	0	0	0	434	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	VIM--MT-ATP8	3	0	VIM	2154	chr10:17271411:+	MT-ATP8	12311	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	VIM->chr10:17270258-17279592:+,vimentin,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0338	FALSE	0	0	0	2	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	VIM--MT-ATP8	3	0	VIM	2193	chr10:17271450:+	MT-ATP8	12307	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	VIM->chr10:17270258-17279592:+,vimentin,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0338	FALSE	0	0	0	2	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1179	chr6:30691476:-	TUBBP2	4914	chr13:41959179:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0338	TRUE	0	1	0	48	1	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.24	1	0.0225	0.0338	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.24	1	0.0563	FALSE	125	705	46	456	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	COL1A2--FLNA	1	5	COL1A2	27456	chr7:94054975:+	FLNA	41481	chrX:153593625:-	ONLY_REF_SPLICE	NO	4752	1523	0	0	0.0113	0.0564	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.19%,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,FLNA->chrX:153576892-153603006:-,filamin_A	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.0677	FALSE	0	0	0	1	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	C17orf76-AS1--ANXA2	2	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	10	0	TRUE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	24	0	0.14	1	0.0113	0.0338	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.0451	FALSE	164	806	69	479	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MYH9--COL6A2	1	2	MYH9	36463	chr22:36682764:-	COL6A2	50442	chr21:47535923:+	ONLY_REF_SPLICE	YES	3581	3499	0	0	0.0113	0.0225	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.03%,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.0338	FALSE	0	0	0	1	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.38	1	0.0113	0.0225	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.0338	FALSE	407	2205	196	549	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	ACTN4--PTTG1IP	1	1	ACTN4	11679	chr19:39207956:+	PTTG1IP	29867	chr21:46281186:-	ONLY_REF_SPLICE	NO	2411	2531	0	0	0.0113	0.0113	GTEx&tcga_normals:1/3694=0.03%,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,PTTG1IP->Oncogene{Bushman},chr21:46269500-46293752:-,pituitary_tumor-transforming_1_interacting_protein	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	CALD1--BPGM	1	1	CALD1	6757	chr7:134528722:+	BPGM	41513	chr7:134363605:+	ONLY_REF_SPLICE	YES	2051	260	0	0.01	0.0113	0.0113	LOCAL_REARRANGEMENT:+:[64438],CALD1->caldesmon_1,chr7:134429003-134655479:+,BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	1	1	COL8A1	12080	chr3:99463865:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	601	249	0	0.01	0.0113	0.0113	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0226	FALSE	4	4	0	17	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	MAP4K4--RFX8	1	1	MAP4K4	2689	chr2:102315000:+	RFX8	46389	chr2:102068908:-	ONLY_REF_SPLICE	YES	232	75	0.01	0.03	0.0113	0.0113	MAP4K4->chr2:102313312-102511149:+,mitogen-activated_protein_kinase_kinase_kinase_kinase_4,RFX8->RFX_family_member_8,_lacking_RFX_DNA_binding_domain,chr2:102013823-102091165:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0113	0.0113	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0226	TRUE	13	17	1	13	0	FALSE	ACH-001142
NHAHTDD_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0113	0.0113	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NHAHTDD_CENTRAL_NERVOUS_SYSTEM	1	1	0.0226	TRUE	274	363	69	150	0	FALSE	ACH-001142
HEC265_ENDOMETRIUM	HMGCR--ANKDD1B	426	174	HMGCR	11764	chr5:74647427:+	ANKDD1B	36202	chr5:74966804:+	ONLY_REF_SPLICE	YES	93	10	0.87	0.98	4.6033	1.8802	HMGCR->3-hydroxy-3-methylglutaryl-CoA_reductase,Oncogene{Bushman},chr5:74632154-74657929:+,ANKDD1B->ankyrin_repeat_and_death_domain_containing_1B,chr5:74907284-74967671:+	HEC265_ENDOMETRIUM	0.87	0.98	6.4835	TRUE	0	0	0	1	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	MT-TA--MT-TN	147	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5885	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC265_ENDOMETRIUM	1	1	1.5885	FALSE	369	2501	205	193	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	TIMM23B--LINC00843	133	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.4372	0.3134	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HEC265_ENDOMETRIUM	0.99	1	1.7506	TRUE	508	994	45	981	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	HMGCR--ANKDD1B	45	195	HMGCR	11764	chr5:74647427:+	ANKDD1B	35070	chr5:74965077:+	ONLY_REF_SPLICE	YES	93	0	0.72	1	0.4863	2.1071	HMGCR->3-hydroxy-3-methylglutaryl-CoA_reductase,Oncogene{Bushman},chr5:74632154-74657929:+,ANKDD1B->ankyrin_repeat_and_death_domain_containing_1B,chr5:74907284-74967671:+	HEC265_ENDOMETRIUM	0.72	1	2.5934	TRUE	0	0	0	1	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	TIMM23--RP11-464F9.1	79	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	251	2	0.25	0.98	0.8537	0.0432	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HEC265_ENDOMETRIUM	0.25	0.98	0.8969	TRUE	519	3926	326	965	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-TA--MT-TC	77	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.832	0.0864	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC265_ENDOMETRIUM	1	1	0.9184	FALSE	462	80	0	856	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	13	145	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	7	0	0.96	1	0.1405	1.5668	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	0.96	1	1.7073	FALSE	344	821	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	7	150	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	16	0	0.91	1	0.0756	1.6209	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	0.91	1	1.6965	FALSE	344	826	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND6--MT-TE	40	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4322	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC265_ENDOMETRIUM	1	1	0.4322	FALSE	499	1288	110	792	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-TA--MT-TN	16	90	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1729	0.9725	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC265_ENDOMETRIUM	1	1	1.1454	FALSE	369	2501	205	193	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	29	15	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19303	2	0	0.96	0.3134	0.1621	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.96	0.4755	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	18	51	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	15003	0	0	1	0.1945	0.5511	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	0	1	0.7456	FALSE	328	800	43	304	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	28	5	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15395	0	0	1	0.3026	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.3566	FALSE	230	193	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-TA--MT-TN	12	68	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1297	0.7348	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC265_ENDOMETRIUM	1	1	0.8645	FALSE	369	2501	205	193	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-TA--MT-TN	23	24	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2485	0.2593	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC265_ENDOMETRIUM	1	1	0.5078	FALSE	369	2501	205	193	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-TA--MT-TN	13	48	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1405	0.5187	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC265_ENDOMETRIUM	1	1	0.6592	FALSE	369	2501	205	193	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND6--MT-TE	21	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.2269	0.0432	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC265_ENDOMETRIUM	0.93	1	0.2701	FALSE	499	1288	110	792	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO2	20	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	120	3	0.18	0.9	0.2161	0.0648	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC265_ENDOMETRIUM	0.18	0.9	0.2809	FALSE	59	21	0	114	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	C15orf57--CBX3	16	19	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	38	17	0.48	0.67	0.1729	0.2053	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEC265_ENDOMETRIUM	0.48	0.67	0.3782	TRUE	267	562	48	632	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND6--MT-TE	20	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2161	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC265_ENDOMETRIUM	1	1	0.2161	FALSE	499	1288	110	792	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	14	21	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17845	44	0	0.44	0.1513	0.2269	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.44	0.3782	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	15	17	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	19198	0	0	1	0.1621	0.1837	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.3458	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	12	28	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.1297	0.3026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0.98	1	0.4323	FALSE	209	205	15	279	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO1	18	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	9461	28066	0	0	0.1945	0.0108	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	0	0.2053	FALSE	183	104	9	328	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	17	5	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15444	2	0	0.92	0.1837	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.92	0.2377	FALSE	230	198	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	C15orf57--CBX3	14	15	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	37	17	0.44	0.63	0.1513	0.1621	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEC265_ENDOMETRIUM	0.44	0.63	0.3134	TRUE	267	562	48	632	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-TA--MT-TN	9	35	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0973	0.3782	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC265_ENDOMETRIUM	1	1	0.4755	FALSE	369	2501	205	193	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	13	17	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18512	44	0	0.41	0.1405	0.1837	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.41	0.3242	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	13	16	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19015	0	0	1	0.1405	0.1729	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.3134	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	5	48	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	37	0	0.59	1	0.054	0.5187	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	0.59	1	0.5727	FALSE	344	826	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-TA--MT-TN	6	44	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0648	0.4755	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC265_ENDOMETRIUM	1	1	0.5403	FALSE	369	2501	205	193	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	9	31	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	55	0	0.42	1	0.0973	0.335	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	0.42	1	0.4323	FALSE	344	826	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MYEOV--SLC35A5	14	9	MYEOV	8645	chr11:69156446:+	SLC35A5	15199	chr3:112282232:+	ONLY_REF_SPLICE	YES	9	29	0.72	0.44	0.1513	0.0973	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,SLC35A5->chr3:112280556-112304424:+,solute_carrier_family_35_member_A5	HEC265_ENDOMETRIUM	0.44	0.72	0.2486	TRUE	0	0	0	1	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	MT-TA--MT-TC	16	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1729	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC265_ENDOMETRIUM	1	1	0.1729	FALSE	462	80	0	856	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	13	11	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20416	0	0	1	0.1405	0.1189	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.2594	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	3	51	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	8226	0	0.01	1	0.0324	0.5511	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	0.01	1	0.5835	FALSE	344	827	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	14	5	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15554	44	0	0.3	0.1513	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.3	0.2053	FALSE	230	198	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO2	14	4	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	124	4	0.13	0.82	0.1513	0.0432	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC265_ENDOMETRIUM	0.13	0.82	0.1945	FALSE	59	21	0	114	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	3	48	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	117	0	0.3	1	0.0324	0.5187	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	0.3	1	0.5511	FALSE	344	827	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	7	32	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	883	0	0.04	1	0.0756	0.3458	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	0.04	1	0.4214	FALSE	344	827	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-CO1--MT-ND1	14	3	MT-CO1	1699	chrM:6602:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	28417	8489	0	0	0.1513	0.0324	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HEC265_ENDOMETRIUM	0	0	0.1837	FALSE	39	30	6	19	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-TA--MT-TN	14	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1513	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC265_ENDOMETRIUM	1	1	0.1513	FALSE	369	2501	205	193	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	3	40	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	5	0	0.9	1	0.0324	0.4322	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	0.9	1	0.4646	FALSE	344	821	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO1	12	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9612	28572	0	0	0.1297	0.0324	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	0	0.1621	FALSE	183	104	9	328	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	6	26	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	17401	0	0	1	0.0648	0.281	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.3458	FALSE	231	215	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO2	11	4	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	115	3	0.12	0.83	0.1189	0.0432	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC265_ENDOMETRIUM	0.12	0.83	0.1621	FALSE	59	21	0	114	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-TA--MT-TN	12	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1297	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC265_ENDOMETRIUM	1	1	0.1297	FALSE	369	2501	205	193	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-CO1--MT-ND1	11	3	MT-CO1	1585	chrM:6488:+	MT-ND1	5558	chrM:3322:+	INCL_NON_REF_SPLICE	YES	24542	0	0	1	0.1189	0.0324	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HEC265_ENDOMETRIUM	0	1	0.1513	FALSE	39	30	6	19	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	5	26	MT-ND4	2197	chrM:11956:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	7620	0	0	1	0.054	0.281	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.335	FALSE	231	215	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	10	5	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15270	2	0	0.88	0.1081	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.88	0.1621	FALSE	230	193	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	RP11-680G10.1--GSE1	11	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	43	1	0.22	0.1189	0.0108	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEC265_ENDOMETRIUM	0.22	1	0.1297	TRUE	465	1949	224	605	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	3	32	MT-ND4	1998	chrM:11757:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	18448	0	0	1	0.0324	0.3458	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	0	1	0.3782	FALSE	344	827	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	4	27	MT-ND4	2226	chrM:11985:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	5169	0	0.01	1	0.0432	0.2918	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0.01	1	0.335	FALSE	216	209	16	281	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	9	7	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18022	2	0	0.89	0.0973	0.0756	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.89	0.1729	FALSE	231	205	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	7	15	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	18854	0	0	1	0.0756	0.1621	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.2377	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	3	31	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	53	0	0.39	1	0.0324	0.335	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	0.39	1	0.3674	FALSE	344	826	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	6	18	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	19076	0	0	1	0.0648	0.1945	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.2593	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	3	28	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	46	0	0.4	1	0.0324	0.3026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0.4	1	0.335	FALSE	213	207	15	279	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-TA--MT-TC	8	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0864	0.0756	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC265_ENDOMETRIUM	1	1	0.162	FALSE	462	80	0	856	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	8	5	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	16177	0	0	1	0.0864	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.1404	FALSE	231	204	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	3	25	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	NO	43	0	0.39	1	0.0324	0.2701	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	0.39	1	0.3025	FALSE	344	826	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	6	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	140	0	0.12	1	0.0648	0.1405	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	0.12	1	0.2053	FALSE	344	827	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	HSPBP1--GRK5	9	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0973	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HEC265_ENDOMETRIUM	1	1	0.0973	TRUE	1	39	0	134	39	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO2	8	4	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	114	3	0.1	0.8	0.0864	0.0432	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC265_ENDOMETRIUM	0.1	0.8	0.1296	FALSE	59	21	0	114	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	RP11-123O10.4--GRIP1	9	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0973	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HEC265_ENDOMETRIUM	1	1	0.0973	FALSE	416	2512	207	587	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO1	7	7	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	12244	0	0	1	0.0756	0.0756	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	1	0.1512	FALSE	182	97	9	327	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO2	7	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	120	4	0.1	0.76	0.0756	0.0648	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC265_ENDOMETRIUM	0.1	0.76	0.1404	FALSE	59	21	0	114	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	3	22	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	18551	0	0	1	0.0324	0.2377	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.2701	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	4	18	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	19006	0	0	1	0.0432	0.1945	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.2377	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO1	7	5	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	11389	25964	0	0	0.0756	0.054	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	0	0.1296	FALSE	183	104	9	328	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	7	5	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	15763	472	0	0.02	0.0756	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.02	0.1296	FALSE	231	204	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	5	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	44	0	0.29	1	0.054	0.1405	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	0.29	1	0.1945	FALSE	344	826	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO2	7	4	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	117	4	0.09	0.73	0.0756	0.0432	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC265_ENDOMETRIUM	0.09	0.73	0.1188	FALSE	59	21	0	114	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO2	7	4	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	115	3	0.09	0.79	0.0756	0.0432	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC265_ENDOMETRIUM	0.09	0.79	0.1188	FALSE	59	21	0	114	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-CO3--MT-CO1	7	4	MT-CO3	1220	chrM:9426:+	MT-CO1	5438	chrM:6557:+	INCL_NON_REF_SPLICE	YES	15738	28879	0	0	0.0756	0.0432	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1762],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	0	0.1188	FALSE	4	27	0	4	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND6--MT-TE	5	11	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0.1189	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC265_ENDOMETRIUM	1	1	0.1729	FALSE	499	1288	110	792	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO1	7	2	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	8794	23153	0	0	0.0756	0.0216	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	0	0.0972	FALSE	183	104	9	328	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	6	6	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	YES	16016	0	0	1	0.0648	0.0648	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.1296	FALSE	231	204	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	6	5	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15395	2	0	0.85	0.0648	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.85	0.1188	FALSE	230	193	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND6--MT-TE	6	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0648	0.054	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC265_ENDOMETRIUM	1	1	0.1188	FALSE	499	1288	110	792	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	4	12	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	19303	802	0	0.02	0.0432	0.1297	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.02	0.1729	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	4	12	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	NO	19202	874	0	0.02	0.0432	0.1297	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.02	0.1729	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND6--MT-TE	6	4	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0648	0.0432	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC265_ENDOMETRIUM	0.83	1	0.108	FALSE	499	1288	110	792	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO1	6	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12244	28479	0	0	0.0648	0.0324	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	0	0.0972	FALSE	183	104	9	328	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-CO1--MT-ND1	6	3	MT-CO1	1324	chrM:6227:+	MT-ND1	5558	chrM:3322:+	INCL_NON_REF_SPLICE	NO	8447	0	0	1	0.0648	0.0324	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HEC265_ENDOMETRIUM	0	1	0.0972	FALSE	39	29	6	19	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MYEOV--SLC35A5	6	3	MYEOV	8645	chr11:69156446:+	SLC35A5	19512	chr3:112292736:+	ONLY_REF_SPLICE	YES	9	39	0.5	0.19	0.0648	0.0324	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,SLC35A5->chr3:112280556-112304424:+,solute_carrier_family_35_member_A5	HEC265_ENDOMETRIUM	0.19	0.5	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO1	3	14	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	2111	16922	0.01	0	0.0324	0.1513	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	0.01	0.1837	FALSE	183	104	9	328	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO1	3	14	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	NO	6589	25902	0	0	0.0324	0.1513	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	0	0.1837	FALSE	183	104	9	328	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	3	14	MT-ND4	1773	chrM:11532:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19303	44	0	0.28	0.0324	0.1513	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.28	0.1837	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	RP11-120D5.1--MID1	6	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	22	1	0.27	0.0648	0.0216	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEC265_ENDOMETRIUM	0.27	1	0.0864	FALSE	16	356	14	466	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO1	6	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9233	28479	0	0	0.0648	0.0108	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	0	0.0756	FALSE	183	104	9	328	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO2	6	1	MT-ATP6	1123	chrM:8649:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	117	6	0.06	0.54	0.0648	0.0108	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC265_ENDOMETRIUM	0.06	0.54	0.0756	FALSE	59	21	0	114	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	4	9	MT-ND4	1452	chrM:11211:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	20734	2	0	0.87	0.0432	0.0973	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.87	0.1405	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	6	1	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	9439	0	0	1	0.0648	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.0756	FALSE	230	193	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	3	13	MT-ND4	1540	chrM:11299:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22453	44	0	0.27	0.0324	0.1405	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.27	0.1729	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	3	13	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	52	0	0.24	1	0.0324	0.1405	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	0.24	1	0.1729	FALSE	344	826	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	15	1	0.32	0.0648	0.0108	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEC265_ENDOMETRIUM	0.32	1	0.0756	TRUE	458	1351	185	561	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO1	3	12	MT-ATP6	1313	chrM:8839:+	MT-CO1	5211	chrM:6433:+	INCL_NON_REF_SPLICE	YES	16079	25767	0	0	0.0324	0.1297	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	0	0.1621	FALSE	183	104	9	328	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	4	8	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	20775	0	0	1	0.0432	0.0864	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.1296	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	3	12	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	19039	1473	0	0.01	0.0324	0.1297	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.01	0.1621	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0648	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC265_ENDOMETRIUM	1	1	0.0648	FALSE	292	1546	117	613	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO1	4	7	MT-ATP6	1153	chrM:8679:+	MT-CO1	4732	chrM:5954:+	INCL_NON_REF_SPLICE	YES	11640	0	0	1	0.0432	0.0756	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	1	0.1188	FALSE	182	97	9	327	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-CO1--MT-ND1	5	3	MT-CO1	1210	chrM:6113:+	MT-ND1	5543	chrM:3307:+	INCL_NON_REF_SPLICE	YES	4006	0	0	1	0.054	0.0324	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HEC265_ENDOMETRIUM	0	1	0.0864	FALSE	38	29	6	19	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-CO3--MT-CO1	5	3	MT-CO3	1144	chrM:9350:+	MT-CO1	5476	chrM:6595:+	INCL_NON_REF_SPLICE	YES	10216	28744	0	0	0.054	0.0324	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1762],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	0	0.0864	FALSE	4	27	0	4	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-CO3--MT-CO1	4	7	MT-CO3	1450	chrM:9656:+	MT-CO1	5315	chrM:6434:+	INCL_NON_REF_SPLICE	YES	18709	25585	0	0	0.0432	0.0756	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1762],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	0	0.1188	FALSE	4	27	0	4	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	4	7	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	20255	1473	0	0.01	0.0432	0.0756	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.01	0.1188	FALSE	231	205	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	3	10	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	20385	0	0	1	0.0324	0.1081	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.1405	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	5	2	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.054	0.0216	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	0.7	1	0.0756	FALSE	344	821	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.054	0.0216	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC265_ENDOMETRIUM	0.88	1	0.0756	FALSE	515	4851	409	746	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO2	5	1	MT-ATP6	1072	chrM:8598:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	70	6	0.08	0.5	0.054	0.0108	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC265_ENDOMETRIUM	0.08	0.5	0.0648	FALSE	59	21	0	114	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	5	1	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	10033	472	0	0.01	0.054	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.01	0.0648	FALSE	230	193	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	4	5	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	15444	44	0	0.17	0.0432	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.17	0.0972	FALSE	230	198	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	4	5	MT-ND4	1213	chrM:10972:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15554	0	0	1	0.0432	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.0972	FALSE	230	198	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	4	5	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	15618	68	0	0.12	0.0432	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.12	0.0972	FALSE	231	204	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	NRIP1--AF127936.7	5	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.054	0.0108	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC265_ENDOMETRIUM	0.46	1	0.0648	FALSE	125	705	46	456	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO1	3	8	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3782	28913	0	0	0.0324	0.0864	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	0	0.1188	FALSE	183	104	9	328	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO2	4	4	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	115	3	0.07	0.73	0.0432	0.0432	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC265_ENDOMETRIUM	0.07	0.73	0.0864	FALSE	59	21	0	114	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO2	4	4	MT-ATP6	1157	chrM:8683:+	MT-CO2	4969	chrM:7873:+	INCL_NON_REF_SPLICE	YES	120	3	0.06	0.73	0.0432	0.0432	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC265_ENDOMETRIUM	0.06	0.73	0.0864	FALSE	59	21	0	114	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-CO3--MT-CO1	5	0	MT-CO3	1031	chrM:9237:+	MT-CO1	5296	chrM:6415:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1762],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	1	1	0.054	FALSE	4	27	0	4	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	3	8	MT-ND4	1359	chrM:11118:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	20442	0	0	1	0.0324	0.0864	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.1188	FALSE	231	216	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	3	8	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20685	44	0	0.2	0.0324	0.0864	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.2	0.1188	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-TA--MT-TC	3	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0.0864	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC265_ENDOMETRIUM	1	1	0.1188	FALSE	462	80	0	856	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-TA--MT-TN	5	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC265_ENDOMETRIUM	1	1	0.054	FALSE	369	2501	205	193	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	SLC7A5--ACTG1	5	0	SLC7A5	8068	chr16:87871474:-	ACTG1	21178	chr17:79478603:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HEC265_ENDOMETRIUM	1	1	0.054	TRUE	0	0	0	11	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO1	3	7	MT-ATP6	1174	chrM:8700:+	MT-CO1	5204	chrM:6426:+	INCL_NON_REF_SPLICE	YES	13127	25274	0	0	0.0324	0.0756	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	0	0.108	FALSE	183	104	9	328	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	3	7	MT-ND4	1321	chrM:11080:+	MT-ATP8	5508	chrM:8495:+	INCL_NON_REF_SPLICE	YES	19880	1211	0	0.01	0.0324	0.0756	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.01	0.108	FALSE	231	211	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	3	7	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	19132	1668	0	0.01	0.0324	0.0756	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.01	0.108	FALSE	231	217	16	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MYEOV--SLC35A5	3	7	MYEOV	8645	chr11:69156446:+	SLC35A5	17181	chr3:112288018:+	ONLY_REF_SPLICE	YES	9	49	0.53	0.17	0.0324	0.0756	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,SLC35A5->chr3:112280556-112304424:+,solute_carrier_family_35_member_A5	HEC265_ENDOMETRIUM	0.17	0.53	0.108	TRUE	0	0	0	1	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	APP--MT-CO3	4	2	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	1750	14185	0	0	0.0432	0.0216	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HEC265_ENDOMETRIUM	0	0	0.0648	FALSE	0	0	0	26	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO1	4	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	9442	25232	0	0	0.0432	0.0216	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	0	0.0648	FALSE	183	104	9	328	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO2	3	6	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	122	3	0.07	0.75	0.0324	0.0648	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC265_ENDOMETRIUM	0.07	0.75	0.0972	FALSE	59	21	0	114	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO2	3	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	120	3	0.07	0.75	0.0324	0.0648	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC265_ENDOMETRIUM	0.07	0.75	0.0972	FALSE	59	21	0	114	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	4	2	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	16173	538	0	0.01	0.0432	0.0216	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.01	0.0648	FALSE	231	204	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	4	2	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	5	0	0.55	1	0.0432	0.0216	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	0.55	1	0.0648	FALSE	344	821	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO1	3	5	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	12100	25847	0	0	0.0324	0.054	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	0	0	0.0864	FALSE	183	104	9	328	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	3	5	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	16177	420	0	0.02	0.0324	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	0.02	0.0864	FALSE	231	204	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ATP8	4	1	MT-ND4	1129	chrM:10888:+	MT-ATP8	5468	chrM:8455:+	INCL_NON_REF_SPLICE	YES	10907	0	0	1	0.0432	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC265_ENDOMETRIUM	0	1	0.054	FALSE	230	193	14	283	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-TA--MT-TC	3	5	MT-TA	1063	chrM:5593:-	MT-TC	4102	chrM:5794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0.054	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC265_ENDOMETRIUM	1	1	0.0864	FALSE	462	80	0	856	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	RPSAP52--HMGA2	4	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	10	182	0.33	0.03	0.0432	0.0108	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HEC265_ENDOMETRIUM	0.03	0.33	0.054	FALSE	0	59	0	125	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO2	3	4	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	123	3	0.05	0.7	0.0324	0.0432	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC265_ENDOMETRIUM	0.05	0.7	0.0756	FALSE	59	21	0	114	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	3	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0.0432	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	1	1	0.0756	FALSE	344	821	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND6--MT-TE	4	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC265_ENDOMETRIUM	1	1	0.0432	FALSE	499	1288	110	792	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC265_ENDOMETRIUM	1	1	0.0432	FALSE	499	1288	110	792	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-TA--MT-TN	4	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC265_ENDOMETRIUM	1	1	0.0432	FALSE	369	2501	205	193	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	SAMD5--SASH1	4	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HEC265_ENDOMETRIUM	1	1	0.0432	TRUE	53	396	64	110	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-CO1--MT-ND1	3	3	MT-CO1	1577	chrM:6480:+	MT-ND1	5559	chrM:3323:+	INCL_NON_REF_SPLICE	YES	25019	0	0	1	0.0324	0.0324	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HEC265_ENDOMETRIUM	0	1	0.0648	FALSE	39	30	6	19	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	AC005540.3--LDHA	3	2	AC005540.3	2138	chr2:191745648:-	LDHA	5439	chr11:18416110:+	INCL_NON_REF_SPLICE	YES	5	2	0.5	0.71	0.0324	0.0216	AC005540.3->chr2:191745523-191746785:-,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	HEC265_ENDOMETRIUM	0.5	0.71	0.054	TRUE	0	0	0	3	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO2	3	2	MT-ATP6	1089	chrM:8615:+	MT-CO2	4955	chrM:7859:+	INCL_NON_REF_SPLICE	YES	111	3	0.04	0.62	0.0324	0.0216	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC265_ENDOMETRIUM	0.04	0.62	0.054	FALSE	59	21	0	114	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-CO1--MT-ND1	3	2	MT-CO1	1699	chrM:6602:+	MT-ND1	6048	chrM:3812:+	INCL_NON_REF_SPLICE	NO	28417	11221	0	0	0.0324	0.0216	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HEC265_ENDOMETRIUM	0	0	0.054	FALSE	39	30	6	19	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	NRIP1--AF127936.7	3	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.23	1	0.0324	0.0216	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC265_ENDOMETRIUM	0.23	1	0.054	FALSE	164	806	69	479	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	RP11-120D5.1--MID1	3	2	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	22	1	0.19	0.0324	0.0216	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEC265_ENDOMETRIUM	0.19	1	0.054	FALSE	2	31	0	60	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	APP--MT-ND2	3	0	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HEC265_ENDOMETRIUM	1	1	0.0324	FALSE	0	1	0	51	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	APP--MT-ND2	3	0	APP	11619	chr21:27394230:-	MT-ND2	32998	chrM:5292:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HEC265_ENDOMETRIUM	1	1	0.0324	FALSE	0	1	0	51	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	C14orf37--PSMA3	3	0	C14orf37	2258	chr14:58758353:-	PSMA3	28539	chr14:58730423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	HEC265_ENDOMETRIUM	1	1	0.0324	FALSE	0	1	0	4	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO1	3	0	MT-ATP6	1555	chrM:9081:+	MT-CO1	5956	chrM:7178:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	1	1	0.0324	FALSE	183	104	9	328	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ATP6--MT-CO1	3	0	MT-ATP6	1564	chrM:9090:+	MT-CO1	5965	chrM:7187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC265_ENDOMETRIUM	1	1	0.0324	FALSE	183	104	9	328	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC265_ENDOMETRIUM	1	1	0.0324	FALSE	344	821	44	306	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC265_ENDOMETRIUM	1	1	0.0324	FALSE	499	1288	110	792	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC265_ENDOMETRIUM	1	1	0.0324	FALSE	499	1288	110	792	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0216	0.0432	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC265_ENDOMETRIUM	0.86	1	0.0648	FALSE	467	2173	244	435	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	EIF1AX--RP11-108M9.2	2	0	EIF1AX	1220	chrX:20159743:-	RP11-108M9.2	17074	chr1:17185544:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_FI:{Skin=[count:3=pct:1.0],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6]},EIF1AX->Oncogene{Bushman},chrX:20142636-20159962:-,eukaryotic_translation_initiation_factor_1A,_X-linked,RP11-108M9.2->chr1:17181902-17185779:+	HEC265_ENDOMETRIUM	1	1	0.0216	TRUE	7	7	1	1	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	HIAT1--DCTD	2	0	HIAT1	1220	chr1:100503872:+	DCTD	19582	chr4:183836728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	HIAT1->chr1:100503653-100548933:+,DCTD->chr4:183811213-183839089:-,dCMP_deaminase	HEC265_ENDOMETRIUM	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	LMCD1--LAMC1	2	0	LMCD1	1274	chr3:8543666:+	LAMC1	16301	chr1:183072463:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LMCD1->LIM_and_cysteine_rich_domains_1,chr3:8543393-8609805:+,LAMC1->chr1:182992595-183114727:+,laminin_subunit_gamma_1	HEC265_ENDOMETRIUM	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	PEAK1--TSPAN3	2	0	PEAK1	1139	chr15:77712348:-	TSPAN3	35139	chr15:77348597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	NEIGHBORS[24145],PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1,TSPAN3->chr15:77336359-77376326:-,tetraspanin_3	HEC265_ENDOMETRIUM	1	1	0.0216	FALSE	0	0	0	2	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	POLE4--RP11-355F16.1	2	0	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	HEC265_ENDOMETRIUM	1	1	0.0216	TRUE	5	7	0	37	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	XRCC5--APLP2	2	0	XRCC5	2602	chr2:216974180:+	APLP2	35798	chr11:129979324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	HEC265_ENDOMETRIUM	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000946
HEC265_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0108	0.0216	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC265_ENDOMETRIUM	0.75	1	0.0324	FALSE	407	2205	196	549	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0108	0.0216	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HEC265_ENDOMETRIUM	1	1	0.0324	TRUE	62	24	1	171	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	ASPH--TXNRD1	1	1	ASPH	8053	chr8:62593527:-	TXNRD1	66799	chr12:104712691:+	ONLY_REF_SPLICE	YES	2268	1937	0	0	0.0108	0.0108	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	HEC265_ENDOMETRIUM	0	0	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	BNIP2--ANXA2	1	1	BNIP2	1400	chr15:59981334:-	ANXA2	37731	chr15:60656722:-	ONLY_REF_SPLICE	YES	79	3335	0.02	0	0.0108	0.0108	BNIP2->BCL2/adenovirus_E1B_19kDa_interacting_protein_2,chr15:59951345-59981733:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	HEC265_ENDOMETRIUM	0	0.02	0.0216	FALSE	0	2	0	6	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	UVSSA--CTBP1	1	1	UVSSA	7499	chr4:1349033:+	CTBP1	24040	chr4:1235307:-	ONLY_REF_SPLICE	YES	30	45	0.06	0.04	0.0108	0.0108	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HEC265_ENDOMETRIUM	0.04	0.06	0.0216	TRUE	23	5	0	14	0	FALSE	ACH-000946
HEC265_ENDOMETRIUM	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	1692	114	0	0.02	0.0108	0.0108	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	HEC265_ENDOMETRIUM	0	0.02	0.0216	FALSE	6	50	7	115	0	FALSE	ACH-000946
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	114	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0036	0.1321	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1357	TRUE	508	994	45	981	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	71	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	90	7	0.44	0.91	0.625	0.0088	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.91	0.6338	TRUE	519	3926	326	965	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	55	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4842	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4842	TRUE	0	0	0	518	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TFG--GPR128	37	12	TFG	5019	chr3:100438902:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	44	0	0.53	1	0.3257	0.1056	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	1	0.4313	TRUE	12	123	7	17	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	26	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2289	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2289	TRUE	0	0	0	434	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	23	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2025	0.0352	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.2377	FALSE	499	1288	110	792	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	17	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1497	0.0352	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1849	FALSE	416	2512	207	587	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	17	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1259	0	0.01	1	0.1497	0.0176	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1673	FALSE	13	9	0	364	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4L--MT-RNR2	17	1	MT-ND4L	1159	chrM:10628:+	MT-RNR2	4852	chrM:2225:+	INCL_NON_REF_SPLICE	YES	810	6823	0.02	0	0.1497	0.0088	LOCAL_REARRANGEMENT:+:[7241],MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.1585	FALSE	17	32	5	7	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	14	0	ZNF654	1688	chr3:88188941:+	HMGB2	12544	chr4:174253295:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1232	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1232	TRUE	0	0	0	518	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.088	0.044	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.132	FALSE	499	1288	110	792	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0968	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0968	FALSE	499	1288	110	792	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.0704	0.088	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.1584	FALSE	499	1288	110	792	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	8	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1258	0	0.01	1	0.0704	0.0176	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.088	FALSE	13	9	0	364	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	7	2	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	12	267	0.43	0.03	0.0616	0.0176	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.43	0.0792	FALSE	0	1	0	18	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	7	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0616	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0616	FALSE	16	356	14	466	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-RNR2	6	3	MT-ND5	2813	chrM:14149:+	MT-RNR2	6390	chrM:2248:+	INCL_NON_REF_SPLICE	YES	0	6536	1	0	0.0528	0.0264	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0792	FALSE	4	13	1	9	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	4	10	AC104820.2	16783	chr2:182227645:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	NO	2	209	0.88	0.06	0.0352	0.088	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.88	0.1232	FALSE	0	0	0	16	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0264	0.1144	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1408	FALSE	499	1288	110	792	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	1	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.044	0.0088	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0528	FALSE	499	1288	110	792	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-503C24.1--MLLT4	5	0	RP11-503C24.1	1331	chr6:168595368:+	MLLT4	31716	chr6:168343809:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.044	0	GTEx_FI:{Colon=[count:1=pct:0.5],Testis=[count:1=pct:1.0]},RP11-503C24.1->chr6:168595038-168605181:+,MLLT4->Oncogene{Bushman},chr6:168227602-168372703:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_4	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.044	TRUE	2	10	1	3	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-RNR2	3	6	MT-ND5	2641	chrM:13977:+	MT-RNR2	5820	chrM:1678:+	INCL_NON_REF_SPLICE	YES	1146	0	0.01	1	0.0264	0.0528	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0792	FALSE	4	13	1	9	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-RNR2	3	6	MT-ND5	2656	chrM:13992:+	MT-RNR2	5841	chrM:1699:+	INCL_NON_REF_SPLICE	YES	1030	0	0.01	1	0.0264	0.0528	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0792	FALSE	4	13	1	9	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	3	5	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	2	267	0.8	0.03	0.0264	0.044	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.8	0.0704	FALSE	0	0	0	19	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-RNR2	4	1	MT-ND5	2730	chrM:14066:+	MT-RNR2	6425	chrM:2283:+	INCL_NON_REF_SPLICE	YES	3	7059	0.62	0	0.0352	0.0088	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.62	0.044	FALSE	4	13	1	9	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-RNR2	4	1	MT-ND5	1627	chrM:12963:+	MT-RNR2	5825	chrM:1683:+	INCL_NON_REF_SPLICE	YES	1901	0	0	1	0.0352	0.0088	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.044	FALSE	3	12	1	7	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4L--MT-RNR2	3	3	MT-ND4L	1299	chrM:10768:+	MT-RNR2	4305	chrM:1678:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0.0264	LOCAL_REARRANGEMENT:+:[7241],MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0528	FALSE	17	32	5	7	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	3	2	AC104820.2	6557	chr2:182091266:+	ITGA4	25155	chr2:182339687:+	INCL_NON_REF_SPLICE	YES	20	267	0.2	0.02	0.0264	0.0176	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.2	0.044	FALSE	0	1	0	18	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-RNR2	3	2	MT-ND5	1735	chrM:13071:+	MT-RNR2	5832	chrM:1690:+	INCL_NON_REF_SPLICE	YES	1425	0	0	1	0.0264	0.0176	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.044	FALSE	3	14	1	9	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VPS53--PPM1E	3	2	VPS53	23305	chr17:505035:-	PPM1E	55914	chr17:57033010:+	ONLY_REF_SPLICE	YES	12	1	0.29	0.83	0.0264	0.0176	VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.83	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001347.6--ANKRD20A11P	3	1	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	18278	chr21:15330506:-	ONLY_REF_SPLICE	YES	10	1	0.29	0.8	0.0264	0.0088	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.8	0.0352	TRUE	0	0	0	3	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0264	TRUE	22	156	2	142	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	2	3	AC104820.2	7753	chr2:182103177:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	21	267	0.19	0.02	0.0176	0.0264	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.19	0.044	FALSE	0	0	0	3	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAG2--LMO2	2	2	STAG2	2224	chrX:123095285:+	LMO2	49502	chr11:33891533:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0.0176	STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,LMO2->LIM_domain_only_2,Oncogene{Bushman},chr11:33880122-33913836:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001347.6--ANKRD20A11P	2	1	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	19348	chr21:15326471:-	ONLY_REF_SPLICE	YES	10	1	0.23	0.75	0.0176	0.0088	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.75	0.0264	TRUE	0	1	0	3	1	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MARK4--CREBBP	2	1	MARK4	8667	chr19:45774966:+	CREBBP	29448	chr16:3843627:-	ONLY_REF_SPLICE	YES	15	37	0.17	0.07	0.0176	0.0088	MARK4->Oncogene{Bushman},chr19:45582546-45808541:+,microtubule_affinity_regulating_kinase_4,CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.17	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0.0088	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0264	FALSE	164	806	69	479	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0.0088	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0264	FALSE	292	1546	117	613	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--GDI2	2	0	FAM208B	7463	chr10:5756170:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0176	TRUE	0	0	0	11	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEGF9--CDK5RAP2	2	0	MEGF9	1713	chr9:123476036:-	CDK5RAP2	49019	chr9:123185019:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	NEIGHBORS[20643],MEGF9->chr9:123363091-123476748:-,multiple_EGF_like_domains_9,CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0176	FALSE	0	1	0	1	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRK--SOBP	2	0	PTPRK	1467	chr6:128841404:-	SOBP	64790	chr6:107979411:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,SOBP->chr6:107811162-107981357:+,sine_oculis_binding_protein_homolog	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAG2--LMO2	1	4	STAG2	2645	chrX:123095706:+	LMO2	47896	chr11:33903433:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0088	0.0352	STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,LMO2->LIM_domain_only_2,Oncogene{Bushman},chr11:33880122-33913836:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC15--SET	2	0	TXNDC15	1728	chr5:134210220:+	SET	18660	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	TXNDC15->chr5:134209493-134237215:+,thioredoxin_domain_containing_15,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001347.6--ANKRD20A11P	1	2	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	13921	chr21:15342431:-	ONLY_REF_SPLICE	NO	10	2	0.23	0.6	0.0088	0.0176	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.6	0.0264	TRUE	0	1	0	4	1	TRUE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR2--DHX34	1	1	GLTSCR2	1262	chr19:48249040:+	DHX34	29491	chr19:47885237:+	ONLY_REF_SPLICE	NO	921	13	0	0.13	0.0088	0.0088	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:2=pct:3.8],Breast=[count:2=pct:1.8],Cervix_Uteri=[count:1=pct:12.5],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=4;pct=0.05%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hippocampus=1,Whole_Blood=1,Spleen=1},GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.13	0.0176	FALSE	14	43	2	13	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	1	1	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	NO	32	57	0.06	0.03	0.0088	0.0088	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.06	0.0176	TRUE	4	3	0	21	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0088	0.0088	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0176	TRUE	62	24	1	171	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	22	0	0.08	1	0.0088	0.0088	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0176	FALSE	272	151	14	158	0	FALSE	ACH-000795
MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWOX--RP11-319G9.5	1	1	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	15	0	0.12	1	0.0088	0.0088	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.0176	FALSE	33	33	2	19	0	FALSE	ACH-000795
NCIH322_LUNG	MT-ND4--MT-ND4L	5889	58	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	63	0	0.99	1	61.9296	0.6099	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.99	1	62.5395	FALSE	344	827	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	UQCC1--PHF20	245	133	UQCC1	4118	chr20:33981895:-	PHF20	46764	chr20:34505406:+	ONLY_REF_SPLICE	YES	210	119	0.64	0.76	2.5765	1.3986	UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	NCIH322_LUNG	0.64	0.76	3.9751	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	TIMM23B--LINC00843	102	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0726	0.2734	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH322_LUNG	0.99	1	1.346	TRUE	508	994	45	981	0	FALSE	ACH-000837
NCIH322_LUNG	NDUFS4--GZMA	96	45	NDUFS4	1128	chr5:52856590:+	GZMA	12280	chr5:54401302:+	ONLY_REF_SPLICE	YES	116	0	0.55	1	1.0096	0.4732	NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+,GZMA->chr5:54398476-54406080:+,granzyme_A	NCIH322_LUNG	0.55	1	1.4828	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	ATP5J2--CUX1	83	2	ATP5J2	1203	chr7:99063752:-	CUX1	19487	chr7:101713619:+	ONLY_REF_SPLICE	YES	0	27	1	0.76	0.8728	0.021	ATP5J2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_F2,chr7:99046098-99063954:-,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	NCIH322_LUNG	0.76	1	0.8938	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	EFHD2--FHAD1	79	13	EFHD2	1385	chr1:15736775:+	FHAD1	58071	chr1:15723793:+	ONLY_REF_SPLICE	YES	70	1	0.57	0.99	0.8308	0.1367	LOCAL_REARRANGEMENT:+:[9612],EFHD2->EF-hand_domain_family_member_D2,chr1:15736391-15756839:+,FHAD1->chr1:15573768-15726779:+,forkhead-associated_(FHA)_phosphopeptide_binding_domain_1	NCIH322_LUNG	0.57	0.99	0.9675	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	11	247	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	28	0	0.9	1	0.1157	2.5975	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.9	1	2.7132	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	70	4	MT-ND5	2641	chrM:13977:+	MT-ND4	6579	chrM:11526:+	INCL_NON_REF_SPLICE	YES	2593	10109	0.03	0.01	0.7361	0.0421	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0.01	0.03	0.7782	FALSE	47	27	1	24	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	7	251	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	36	0	0.88	1	0.0736	2.6396	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.88	1	2.7132	FALSE	344	827	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	7	248	MT-ND4	1220	chrM:10979:+	MT-ND4L	5536	chrM:10627:+	INCL_NON_REF_SPLICE	YES	37	1	0.87	1	0.0736	2.608	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.87	1	2.6816	FALSE	344	827	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	ATP5J2--CUX1	67	2	ATP5J2	1221	chr7:99063734:-	CUX1	19487	chr7:101713619:+	ONLY_REF_SPLICE	YES	0	27	1	0.72	0.7046	0.021	ATP5J2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_F2,chr7:99046098-99063954:-,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	NCIH322_LUNG	0.72	1	0.7256	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	4	250	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	37	0	0.87	1	0.0421	2.629	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.87	1	2.6711	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	3	252	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	653	2	0.28	0.99	0.0315	2.6501	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.28	0.99	2.6816	FALSE	344	827	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	3	250	MT-ND4	1263	chrM:11022:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	62	0	0.8	1	0.0315	2.629	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.8	1	2.6605	FALSE	344	827	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	3	248	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	37	2	0.87	0.99	0.0315	2.608	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.87	0.99	2.6395	FALSE	344	827	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	PTPRJ--C11orf54	59	23	PTPRJ	5874	chr11:48134535:+	C11orf54	40996	chr11:93488376:+	ONLY_REF_SPLICE	YES	36	14	0.69	0.85	0.6205	0.2419	PTPRJ->Oncogene{Bushman},chr11:48002113-48189670:+,protein_tyrosine_phosphatase,_receptor_type_J,C11orf54->chr11:93474757-93497915:+,chromosome_11_open_reading_frame_54	NCIH322_LUNG	0.69	0.85	0.8624	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	3	246	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	28	1	0.9	1	0.0315	2.587	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.9	1	2.6185	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	4	242	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	17	2	0.94	0.99	0.0421	2.5449	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.94	0.99	2.587	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	4	239	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	15	1	0.94	1	0.0421	2.5134	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.94	1	2.5555	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	AMBRA1--DLG2	53	41	AMBRA1	1298	chr11:46615378:-	DLG2	76733	chr11:83195271:-	ONLY_REF_SPLICE	YES	19	0	0.83	1	0.5574	0.4312	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	NCIH322_LUNG	0.83	1	0.9886	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-TA--MT-TC	60	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.631	0.0631	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH322_LUNG	1	1	0.6941	FALSE	462	80	0	856	0	FALSE	ACH-000837
NCIH322_LUNG	TIMM23--RP11-464F9.1	60	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	178	1	0.26	0.98	0.631	0.0315	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH322_LUNG	0.26	0.98	0.6625	TRUE	519	3926	326	965	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	51	34	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	35	0	0.71	1	0.5363	0.3575	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.71	1	0.8938	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	13	176	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	12	2	0.94	0.99	0.1367	1.8508	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.94	0.99	1.9875	FALSE	344	821	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	4	207	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	10	1	0.95	1	0.0421	2.1768	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.95	1	2.2189	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ATP8	53	9	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4775	5	0.01	0.93	0.5574	0.0946	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH322_LUNG	0.01	0.93	0.652	FALSE	43	37	8	105	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	50	1	MT-ND5	2680	chrM:14016:+	MT-ND4	6806	chrM:11753:+	INCL_NON_REF_SPLICE	YES	1298	1468	0.04	0.03	0.5258	0.0105	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0.03	0.04	0.5363	FALSE	47	27	1	24	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	4	180	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	15	1	0.92	0.99	0.0421	1.8929	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.92	0.99	1.935	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND6--MT-TE	47	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4943	0.0526	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH322_LUNG	1	1	0.5469	FALSE	499	1288	110	792	0	FALSE	ACH-000837
NCIH322_LUNG	EXD3--RP11-98L5.2	41	24	EXD3	2255	chr9:140289755:-	RP11-98L5.2	34963	chr9:138469196:+	ONLY_REF_SPLICE	YES	38	0	0.63	1	0.4312	0.2524	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,RP11-98L5.2->chr9:138466781-138478958:+	NCIH322_LUNG	0.63	1	0.6836	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	AFMID--SYNGR2	43	14	AFMID	2467	chr17:76187141:+	SYNGR2	16505	chr17:76166898:+	ONLY_REF_SPLICE	YES	45	410	0.56	0.12	0.4522	0.1472	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[13790],AFMID->arylformamidase,chr17:76183398-76203782:+,SYNGR2->chr17:76164639-76169608:+,synaptogyrin_2	NCIH322_LUNG	0.12	0.56	0.5994	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	16	109	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	6	12	0.95	0.91	0.1683	1.1463	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.91	0.95	1.3146	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	5	147	MT-ND4	1170	chrM:10929:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	34	1	0.82	0.99	0.0526	1.5459	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.82	0.99	1.5985	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	NDUFS4--GZMA	36	19	NDUFS4	1128	chr5:52856590:+	GZMA	13425	chr5:54403622:+	ONLY_REF_SPLICE	YES	116	13	0.32	0.81	0.3786	0.1998	NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+,GZMA->chr5:54398476-54406080:+,granzyme_A	NCIH322_LUNG	0.32	0.81	0.5784	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	3	150	MT-ND4	1060	chrM:10819:+	MT-ND4L	5532	chrM:10623:+	INCL_NON_REF_SPLICE	YES	8	1	0.95	0.99	0.0315	1.5774	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.95	0.99	1.6089	FALSE	344	821	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	25	59	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	827	0	0.09	1	0.2629	0.6205	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.09	1	0.8834	FALSE	344	827	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	39	1	MT-ND5	2509	chrM:13845:+	MT-ND4	7031	chrM:11978:+	INCL_NON_REF_SPLICE	YES	4237	49	0.01	0.45	0.4101	0.0105	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0.01	0.45	0.4206	FALSE	45	28	1	23	0	FALSE	ACH-000837
NCIH322_LUNG	UQCC1--PHF20	5	133	UQCC1	5160	chr20:33980039:-	PHF20	46764	chr20:34505406:+	ONLY_REF_SPLICE	YES	250	119	0.36	0.54	0.0526	1.3986	UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	NCIH322_LUNG	0.36	0.54	1.4512	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	SHANK3--RP5-1119A7.14	34	10	SHANK3	6898	chr22:51123079:+	RP5-1119A7.14	29036	chr22:36841654:-	ONLY_REF_SPLICE	YES	6	0	0.88	1	0.3575	0.1052	SHANK3->SH3_and_multiple_ankyrin_repeat_domains_3,chr22:51112843-51171726:+,RP5-1119A7.14->chr22:36841445-36850991:-	NCIH322_LUNG	0.88	1	0.4627	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	UQCC1--PHF20	3	133	UQCC1	4118	chr20:33981895:-	PHF20	46766	chr20:34505408:+	INCL_NON_REF_SPLICE	YES	210	117	0.39	0.54	0.0315	1.3986	UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	NCIH322_LUNG	0.39	0.54	1.4301	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	5	120	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	7	68	0.95	0.65	0.0526	1.2619	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.65	0.95	1.3145	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	6	115	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	11	13	0.92	0.9	0.0631	1.2094	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.9	0.92	1.2725	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	7	110	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	6	12	0.95	0.91	0.0736	1.1568	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.91	0.95	1.2304	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND6--MT-TE	29	22	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.305	0.2314	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH322_LUNG	0.89	1	0.5364	FALSE	499	1288	110	792	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	3	125	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	32	1	0.8	0.99	0.0315	1.3145	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.8	0.99	1.346	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	4	120	MT-CO3	1220	chrM:9426:+	MT-ATP6	5072	chrM:8814:+	INCL_NON_REF_SPLICE	YES	8	21	0.94	0.86	0.0421	1.2619	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.86	0.94	1.304	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	18	60	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	15090	0	0.01	1	0.1893	0.631	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.01	1	0.8203	FALSE	328	800	43	304	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	4	112	MT-CO3	1113	chrM:9319:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0421	1.1778	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.98	1	1.2199	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	4	111	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	6	76	0.95	0.6	0.0421	1.1673	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.6	0.95	1.2094	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	3	114	MT-CO3	1144	chrM:9350:+	MT-ATP6	5171	chrM:8913:+	INCL_NON_REF_SPLICE	YES	6	73	0.95	0.62	0.0315	1.1988	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.62	0.95	1.2303	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	3	114	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	11	11	0.91	0.91	0.0315	1.1988	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.91	0.91	1.2303	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	3	112	MT-CO3	1153	chrM:9359:+	MT-ATP6	5249	chrM:8991:+	INCL_NON_REF_SPLICE	YES	8	12	0.93	0.91	0.0315	1.1778	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.91	0.93	1.2093	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	4	106	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	3	10	0.97	0.92	0.0421	1.1147	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.92	0.97	1.1568	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO2--MT-CO1	28	5	MT-CO2	1249	chrM:7834:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9	26130	0.79	0	0.2945	0.0526	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH322_LUNG	0	0.79	0.3471	FALSE	36	10	0	27	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	4	100	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	3	11	0.97	0.9	0.0421	1.0516	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.9	0.97	1.0937	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	3	102	MT-CO3	1089	chrM:9295:+	MT-ATP6	5156	chrM:8898:+	INCL_NON_REF_SPLICE	YES	3	62	0.97	0.63	0.0315	1.0726	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.63	0.97	1.1041	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND6--MT-TE	25	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2629	0.0526	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH322_LUNG	1	1	0.3155	FALSE	499	1288	110	792	0	FALSE	ACH-000837
NCIH322_LUNG	RP11-123O10.4--GRIP1	25	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2629	0.0421	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH322_LUNG	1	1	0.305	FALSE	416	2512	207	587	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	15	43	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	6	4	0.91	0.94	0.1577	0.4522	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.91	0.94	0.6099	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	17	34	MT-ND4	1213	chrM:10972:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	37	0	0.58	1	0.1788	0.3575	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.58	1	0.5363	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	3	80	MT-CO3	1060	chrM:9266:+	MT-ATP6	5311	chrM:9053:+	INCL_NON_REF_SPLICE	YES	0	11	1	0.88	0.0315	0.8413	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.88	1	0.8728	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	UQCC1--RPN2	21	8	UQCC1	17031	chr20:33902491:-	RPN2	35241	chr20:35842163:+	ONLY_REF_SPLICE	YES	60	1346	0.33	0.02	0.2208	0.0841	UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,RPN2->chr20:35806813-35870022:+,ribophorin_II	NCIH322_LUNG	0.02	0.33	0.3049	TRUE	0	0	0	1	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	4	72	MT-ND4	1125	chrM:10884:+	MT-ND4L	5651	chrM:10742:+	INCL_NON_REF_SPLICE	YES	21	1	0.78	0.99	0.0421	0.7572	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.78	0.99	0.7993	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	11	41	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	4	4	0.93	0.93	0.1157	0.4312	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.93	0.93	0.5469	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	AMBRA1--DLG2	14	28	AMBRA1	1298	chr11:46615378:-	DLG2	79987	chr11:83183820:-	ONLY_REF_SPLICE	YES	19	9	0.69	0.82	0.1472	0.2945	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	NCIH322_LUNG	0.69	0.82	0.4417	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ATP8	19	6	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7409	47	0	0.35	0.1998	0.0631	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH322_LUNG	0	0.35	0.2629	FALSE	43	37	8	105	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO2--MT-CO1	17	10	MT-CO2	1282	chrM:7867:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	10	24489	0.73	0	0.1788	0.1052	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH322_LUNG	0	0.73	0.284	FALSE	36	10	0	27	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	5	58	MT-ND5	2813	chrM:14149:+	MT-ND4	5957	chrM:10904:+	INCL_NON_REF_SPLICE	YES	0	5066	1	0.01	0.0526	0.6099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0.01	1	0.6625	FALSE	29	25	1	23	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	10	38	MT-ND5	2667	chrM:14003:+	MT-ND4	6019	chrM:10966:+	INCL_NON_REF_SPLICE	NO	1872	11005	0.03	0	0.1052	0.3996	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0	0.03	0.5048	FALSE	29	25	1	23	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	3	64	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	3	0	0.96	1	0.0315	0.673	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.96	1	0.7045	FALSE	344	821	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	10	34	MT-ND4	1452	chrM:11211:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	393	0	0.1	1	0.1052	0.3575	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.1	1	0.4627	FALSE	344	827	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	4	58	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	33	0	0.65	1	0.0421	0.6099	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.65	1	0.652	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ATP8	15	14	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.1577	0.1472	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH322_LUNG	0.88	1	0.3049	FALSE	43	37	8	105	0	FALSE	ACH-000837
NCIH322_LUNG	SLAIN2--TMEM255B	16	10	SLAIN2	1807	chr4:48344145:+	TMEM255B	20317	chr13:114469088:+	ONLY_REF_SPLICE	YES	31	0	0.46	1	0.1683	0.1052	SLAIN2->SLAIN_motif_family_member_2,chr4:48343339-48428229:+,TMEM255B->chr13:114462216-114514926:+,transmembrane_protein_255B	NCIH322_LUNG	0.46	1	0.2735	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	16	9	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	6	1	0.81	0.96	0.1683	0.0946	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.81	0.96	0.2629	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	3	59	MT-CO3	1039	chrM:9245:+	MT-ATP6	5321	chrM:9063:+	INCL_NON_REF_SPLICE	YES	0	11	1	0.85	0.0315	0.6205	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.85	1	0.652	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	AMBRA1--DLG2	16	6	AMBRA1	1194	chr11:46615482:-	DLG2	76733	chr11:83195271:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1683	0.0631	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	NCIH322_LUNG	0.96	1	0.2314	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	3	58	MT-CO3	1033	chrM:9239:+	MT-ATP6	4768	chrM:8510:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0.6099	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	1	1	0.6414	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	3	58	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	76	0	0.45	1	0.0315	0.6099	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.45	1	0.6414	FALSE	344	827	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	3	58	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	32	0	0.66	1	0.0315	0.6099	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.66	1	0.6414	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	4	53	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	3	1	0.95	0.98	0.0421	0.5574	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.95	0.98	0.5995	FALSE	344	821	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	16	5	MT-ND5	1408	chrM:12744:+	MT-ND4	6189	chrM:11136:+	INCL_NON_REF_SPLICE	YES	366	19742	0.05	0	0.1683	0.0526	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0	0.05	0.2209	FALSE	18	23	1	20	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	3	56	MT-CO3	1126	chrM:9332:+	MT-ATP6	5405	chrM:9147:+	INCL_NON_REF_SPLICE	YES	6	4	0.91	0.94	0.0315	0.5889	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.91	0.94	0.6204	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	3	56	MT-CO3	1032	chrM:9238:+	MT-ATP6	5217	chrM:8959:+	INCL_NON_REF_SPLICE	YES	0	67	1	0.47	0.0315	0.5889	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.47	1	0.6204	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-TA--MT-TC	15	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1577	0.0631	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH322_LUNG	1	1	0.2208	FALSE	462	80	0	856	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	12	17	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	76	0	0.28	1	0.1262	0.1788	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.28	1	0.305	FALSE	344	827	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND6--MT-TE	4	48	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0.5048	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH322_LUNG	1	1	0.5469	FALSE	499	1288	110	792	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	9	27	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	31	0	0.54	1	0.0946	0.2839	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.54	1	0.3785	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	3	51	MT-ND5	2721	chrM:14057:+	MT-ND4	5917	chrM:10864:+	INCL_NON_REF_SPLICE	YES	8	498	0.87	0.1	0.0315	0.5363	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0.1	0.87	0.5678	FALSE	29	25	1	23	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	7	34	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	500	0	0.08	1	0.0736	0.3575	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.08	1	0.4311	FALSE	344	827	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	RP11-403B2.7--RP11-403B2.6	10	22	RP11-403B2.7	1254	chr15:20961259:-	RP11-403B2.6	7754	chr15:20965236:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.1052	0.2314	GTEx_FI:{Brain=[count:17=pct:2.6],Esophagus=[count:15=pct:3.7],Blood_Vessel=[count:8=pct:2.2],Skin=[count:7=pct:2.2],Thyroid=[count:5=pct:2.8],Prostate=[count:4=pct:6.6],Lung=[count:4=pct:2.4],Heart=[count:3=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Blood=[count:2=pct:1.1],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},LOCAL_REARRANGEMENT:-:[3128],RP11-403B2.7->chr15:20935076-20961512:-,RP11-403B2.6->chr15:20964640-20980123:-	NCIH322_LUNG	0.97	1	0.3366	TRUE	22	66	5	11	0	FALSE	ACH-000837
NCIH322_LUNG	WWTR1--RP11-114H23.2	12	13	WWTR1	15384	chr3:149260122:-	RP11-114H23.2	28550	chr12:76088755:-	ONLY_REF_SPLICE	YES	142	0	0.15	1	0.1262	0.1367	WWTR1->WW_domain_containing_transcription_regulator_1,chr3:149235022-149454501:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH322_LUNG	0.15	1	0.2629	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	PTPRJ--C11orf54	14	4	PTPRJ	5874	chr11:48134535:+	C11orf54	42180	chr11:93490482:+	ONLY_REF_SPLICE	YES	36	37	0.33	0.33	0.1472	0.0421	PTPRJ->Oncogene{Bushman},chr11:48002113-48189670:+,protein_tyrosine_phosphatase,_receptor_type_J,C11orf54->chr11:93474757-93497915:+,chromosome_11_open_reading_frame_54	NCIH322_LUNG	0.33	0.33	0.1893	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	9	21	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	6	3	0.83	0.91	0.0946	0.2208	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.83	0.91	0.3154	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND6--MT-TE	7	29	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	6	0	0.86	1	0.0736	0.305	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH322_LUNG	0.86	1	0.3786	FALSE	499	1288	110	792	0	FALSE	ACH-000837
NCIH322_LUNG	MYH9--SHANK3	12	9	MYH9	1212	chr22:36783852:-	SHANK3	45227	chr22:51113476:+	ONLY_REF_SPLICE	YES	481	0	0.04	1	0.1262	0.0946	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,SHANK3->SH3_and_multiple_ankyrin_repeat_domains_3,chr22:51112843-51171726:+	NCIH322_LUNG	0.04	1	0.2208	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	NPM1P24--SET	14	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1472	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH322_LUNG	1	1	0.1472	TRUE	0	0	0	434	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	4	39	MT-ND5	2764	chrM:14100:+	MT-ND4	6098	chrM:11045:+	INCL_NON_REF_SPLICE	YES	0	15276	1	0	0.0421	0.4101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0	1	0.4522	FALSE	47	27	1	23	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	5	34	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	37	0	0.51	1	0.0526	0.3575	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.51	1	0.4101	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	RP11-6N13.1--CTD-2374C24.1	12	6	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1262	0.0631	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH322_LUNG	1	1	0.1893	TRUE	5	4	0	46	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	3	41	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	11	1	0.8	0.0315	0.4312	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.8	1	0.4627	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	4	37	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	30	0	0.58	1	0.0421	0.3891	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.58	1	0.4312	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	4	37	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	8	1	0.84	0.98	0.0421	0.3891	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.84	0.98	0.4312	FALSE	344	821	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	7	25	MT-ND5	2455	chrM:13791:+	MT-ND4	6098	chrM:11045:+	INCL_NON_REF_SPLICE	YES	3711	15276	0.01	0	0.0736	0.2629	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0	0.01	0.3365	FALSE	47	28	1	23	0	FALSE	ACH-000837
NCIH322_LUNG	TMEM156--LIMCH1	11	6	TMEM156	1697	chr4:39033846:-	LIMCH1	24161	chr4:41600937:+	ONLY_REF_SPLICE	YES	195	2	0.08	0.89	0.1157	0.0631	TMEM156->chr4:38968365-39034542:-,transmembrane_protein_156,LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+	NCIH322_LUNG	0.08	0.89	0.1788	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	AP000525.9--LA16c-60G3.6	12	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1262	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH322_LUNG	1	1	0.1262	TRUE	0	42	0	133	42	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	4	32	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	3	4	0.92	0.9	0.0421	0.3365	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.9	0.92	0.3786	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND6--MT-TE	5	28	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.87	1	0.0526	0.2945	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH322_LUNG	0.87	1	0.3471	FALSE	499	1288	110	792	0	FALSE	ACH-000837
NCIH322_LUNG	MT-TA--MT-TC	12	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1262	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH322_LUNG	1	1	0.1262	FALSE	462	80	0	856	0	FALSE	ACH-000837
NCIH322_LUNG	ZNF654--HMGB2	12	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1262	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH322_LUNG	1	1	0.1262	TRUE	0	0	0	518	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	8	15	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	9	3	0.72	0.88	0.0841	0.1577	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.72	0.88	0.2418	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ATP8	8	15	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0841	0.1577	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH322_LUNG	1	1	0.2418	FALSE	43	37	8	105	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	3	34	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	71	0	0.34	1	0.0315	0.3575	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.34	1	0.389	FALSE	344	827	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	3	34	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	32	0	0.54	1	0.0315	0.3575	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.54	1	0.389	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	AMBRA1--DLG2	10	5	AMBRA1	1194	chr11:46615482:-	DLG2	79987	chr11:83183820:-	INCL_NON_REF_SPLICE	YES	1	9	0.94	0.62	0.1052	0.0526	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	NCIH322_LUNG	0.62	0.94	0.1578	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	7	17	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	40	0	0.38	1	0.0736	0.1788	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.38	1	0.2524	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	C15orf57--CBX3	8	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	51	62	0.28	0.24	0.0841	0.1262	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH322_LUNG	0.24	0.28	0.2103	TRUE	267	562	48	632	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	3	31	MT-ND4	1170	chrM:10929:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	34	0	0.5	1	0.0315	0.326	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.5	1	0.3575	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	3	31	MT-ND5	2707	chrM:14043:+	MT-ND4	6119	chrM:11066:+	INCL_NON_REF_SPLICE	YES	218	17123	0.13	0	0.0315	0.326	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0	0.13	0.3575	FALSE	47	27	1	24	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO2--MT-CO1	6	18	MT-CO2	1443	chrM:8028:+	MT-CO1	5365	chrM:6584:+	INCL_NON_REF_SPLICE	YES	17	26628	0.59	0	0.0631	0.1893	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH322_LUNG	0	0.59	0.2524	FALSE	36	10	0	27	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	6	17	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	33	0	0.41	1	0.0631	0.1788	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.41	1	0.2419	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	4	25	MT-ND5	2251	chrM:13587:+	MT-ND4	6022	chrM:10969:+	INCL_NON_REF_SPLICE	YES	4703	11144	0.01	0	0.0421	0.2629	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0	0.01	0.305	FALSE	30	27	1	23	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	4	25	MT-ND5	2730	chrM:14066:+	MT-ND4	6199	chrM:11146:+	INCL_NON_REF_SPLICE	YES	4	19678	0.88	0	0.0421	0.2629	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0	0.88	0.305	FALSE	47	27	1	24	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	10	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1052	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	1	1	0.1052	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	3	28	MT-ND5	2697	chrM:14033:+	MT-ND4	6140	chrM:11087:+	INCL_NON_REF_SPLICE	YES	702	17869	0.04	0	0.0315	0.2945	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0	0.04	0.326	FALSE	47	27	1	24	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	5	20	MT-ND5	2247	chrM:13583:+	MT-ND4	6120	chrM:11067:+	INCL_NON_REF_SPLICE	NO	4767	17229	0.01	0	0.0526	0.2103	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0	0.01	0.2629	FALSE	47	29	1	24	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND6--MT-TE	5	20	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0.2103	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH322_LUNG	1	1	0.2629	FALSE	499	1288	110	792	0	FALSE	ACH-000837
NCIH322_LUNG	RP11-519G16.3--SNX1	9	4	RP11-519G16.3	2548	chr15:45742488:+	SNX1	22677	chr15:64415702:+	ONLY_REF_SPLICE	YES	1	77	0.93	0.14	0.0946	0.0421	RP11-519G16.3->chr15:45740625-45805965:+,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	NCIH322_LUNG	0.14	0.93	0.1367	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	3	27	MT-ND4	1195	chrM:10954:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	NO	33	0	0.48	1	0.0315	0.2839	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.48	1	0.3154	FALSE	344	826	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	3	27	MT-ND4	1287	chrM:11046:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	72	0	0.29	1	0.0315	0.2839	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.29	1	0.3154	FALSE	344	827	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	5	19	MT-ND5	2309	chrM:13645:+	MT-ND4	6192	chrM:11139:+	INCL_NON_REF_SPLICE	YES	3893	19619	0.01	0	0.0526	0.1998	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0	0.01	0.2524	FALSE	47	29	1	24	0	FALSE	ACH-000837
NCIH322_LUNG	SLAIN2--TMEM255B	9	2	SLAIN2	1807	chr4:48344145:+	TMEM255B	31131	chr13:114514709:+	ONLY_REF_SPLICE	YES	31	9	0.26	0.55	0.0946	0.021	SLAIN2->SLAIN_motif_family_member_2,chr4:48343339-48428229:+,TMEM255B->chr13:114462216-114514926:+,transmembrane_protein_255B	NCIH322_LUNG	0.26	0.55	0.1156	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	UQCC1--RPN2	8	5	UQCC1	12228	chr20:33934967:-	RPN2	36347	chr20:35852281:+	ONLY_REF_SPLICE	YES	96	1433	0.12	0.01	0.0841	0.0526	UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,RPN2->chr20:35806813-35870022:+,ribophorin_II	NCIH322_LUNG	0.01	0.12	0.1367	TRUE	0	0	0	1	0	FALSE	ACH-000837
NCIH322_LUNG	ZSCAN25--CUX1	9	1	ZSCAN25	7701	chr7:99221803:+	CUX1	20416	chr7:101559395:+	ONLY_REF_SPLICE	YES	17	4	0.37	0.71	0.0946	0.0105	ZSCAN25->chr7:99214569-99230030:+,zinc_finger_and_SCAN_domain_containing_25,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	NCIH322_LUNG	0.37	0.71	0.1051	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	9	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0946	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	1	1	0.0946	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	ANKIB1--ASB4	8	3	ANKIB1	1286	chr7:91875833:+	ASB4	33363	chr7:95125070:+	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.0841	0.0315	HGNC_GENEFAM,ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+,ASB4->ankyrin_repeat_and_SOCS_box_containing_4,chr7:95107756-95169544:+	NCIH322_LUNG	0.79	1	0.1156	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-CO2--MT-CO1	3	23	MT-CO2	1547	chrM:8132:+	MT-CO1	5229	chrM:6448:+	INCL_NON_REF_SPLICE	YES	4	24693	0.87	0	0.0315	0.2419	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH322_LUNG	0	0.87	0.2734	FALSE	36	10	0	27	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND6--MT-TE	3	23	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0.2419	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH322_LUNG	1	1	0.2734	FALSE	499	1288	110	792	0	FALSE	ACH-000837
NCIH322_LUNG	SLAIN2--TMEM255B	7	6	SLAIN2	1807	chr4:48344145:+	TMEM255B	24140	chr13:114498121:+	ONLY_REF_SPLICE	YES	31	2	0.3	0.87	0.0736	0.0631	SLAIN2->SLAIN_motif_family_member_2,chr4:48343339-48428229:+,TMEM255B->chr13:114462216-114514926:+,transmembrane_protein_255B	NCIH322_LUNG	0.3	0.87	0.1367	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	SLC7A5--MT-ND4L	8	2	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1624	0	0.01	1	0.0841	0.021	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.01	1	0.1051	FALSE	0	0	0	23	0	FALSE	ACH-000837
NCIH322_LUNG	ZNF592--AUTS2	8	2	ZNF592	12424	chr15:85345718:+	AUTS2	23568	chr7:69364272:+	INCL_NON_REF_SPLICE	YES	81	1	0.11	0.91	0.0841	0.021	{Klijn_CCL:Lung=1},ZNF592->chr15:85291866-85349659:+,zinc_finger_protein_592,AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+	NCIH322_LUNG	0.11	0.91	0.1051	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	8	1	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	7	0	0.56	1	0.0841	0.0105	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.56	1	0.0946	FALSE	344	821	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	8	1	MT-ND5	2730	chrM:14066:+	MT-ND4	7048	chrM:11995:+	INCL_NON_REF_SPLICE	YES	4	33	0.69	0.21	0.0841	0.0105	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0.21	0.69	0.0946	FALSE	45	27	1	23	0	FALSE	ACH-000837
NCIH322_LUNG	RP11-96H19.1--RP11-446N19.1	8	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0841	0.0105	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH322_LUNG	1	1	0.0946	FALSE	515	4851	409	746	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	8	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0841	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	1	1	0.0841	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND1--MT-TL1	5	12	MT-ND1	1341	chrM:3647:+	MT-TL1	5012	chrM:3285:+	INCL_NON_REF_SPLICE	YES	40	0	0.3	1	0.0526	0.1262	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH322_LUNG	0.3	1	0.1788	FALSE	210	95	5	49	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	8	0	MT-ND4	1019	chrM:10778:+	MT-ND4L	5617	chrM:10708:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0841	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	1	1	0.0841	FALSE	344	821	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	4	15	MT-CO3	1132	chrM:9338:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	6	3	0.76	0.86	0.0421	0.1577	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.76	0.86	0.1998	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	7	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.83	0.0736	0.0315	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.83	1	0.1051	FALSE	344	821	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	NRIP1--AF127936.7	7	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.67	1	0.0736	0.0315	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH322_LUNG	0.67	1	0.1051	FALSE	125	705	46	456	0	FALSE	ACH-000837
NCIH322_LUNG	C15orf57--CBX3	5	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	49	62	0.23	0.19	0.0526	0.1052	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH322_LUNG	0.19	0.23	0.1578	TRUE	267	562	48	632	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ATP8	5	10	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	5368	0	0	1	0.0526	0.1052	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH322_LUNG	0	1	0.1578	FALSE	43	37	8	105	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ATP8	4	14	MT-ND5	2644	chrM:13980:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	2451	0	0.01	1	0.0421	0.1472	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH322_LUNG	0.01	1	0.1893	FALSE	43	37	8	105	0	FALSE	ACH-000837
NCIH322_LUNG	UQCC1--RPN2	6	6	UQCC1	17031	chr20:33902491:-	RPN2	36347	chr20:35852281:+	ONLY_REF_SPLICE	YES	60	1433	0.17	0.01	0.0631	0.0631	UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,RPN2->chr20:35806813-35870022:+,ribophorin_II	NCIH322_LUNG	0.01	0.17	0.1262	TRUE	0	0	0	1	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO2--MT-CO1	6	5	MT-CO2	1231	chrM:7816:+	MT-CO1	5348	chrM:6567:+	INCL_NON_REF_SPLICE	YES	8	25799	0.58	0	0.0631	0.0526	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH322_LUNG	0	0.58	0.1157	FALSE	36	10	0	27	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND1--MT-TL1	5	9	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0.0946	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH322_LUNG	1	1	0.1472	FALSE	210	95	5	49	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	3	17	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	76	0	0.21	1	0.0315	0.1788	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.21	1	0.2103	FALSE	344	827	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	5	9	MT-ND5	2794	chrM:14130:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	0	10917	1	0	0.0526	0.0946	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0	1	0.1472	FALSE	47	27	1	24	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO2--MT-CO1	4	12	MT-CO2	1359	chrM:7944:+	MT-CO1	5335	chrM:6554:+	INCL_NON_REF_SPLICE	YES	8	26224	0.67	0	0.0421	0.1262	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH322_LUNG	0	0.67	0.1683	FALSE	36	10	0	27	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0736	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH322_LUNG	1	1	0.0736	FALSE	499	1288	110	792	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND6--MT-TE	7	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0736	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH322_LUNG	1	1	0.0736	FALSE	499	1288	110	792	0	FALSE	ACH-000837
NCIH322_LUNG	RP11-519G16.3--SNX1	6	4	RP11-519G16.3	4713	chr15:45752767:+	SNX1	22677	chr15:64415702:+	ONLY_REF_SPLICE	YES	2	77	0.83	0.11	0.0631	0.0421	RP11-519G16.3->chr15:45740625-45805965:+,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	NCIH322_LUNG	0.11	0.83	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	RP11-96H19.1--RP11-446N19.1	6	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0631	0.0421	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH322_LUNG	0.91	1	0.1052	FALSE	467	2173	244	435	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO2--MT-CO1	4	11	MT-CO2	1320	chrM:7905:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10	26130	0.6	0	0.0421	0.1157	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH322_LUNG	0	0.6	0.1578	FALSE	36	10	0	27	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	5	7	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	9	1	0.57	0.92	0.0526	0.0736	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.57	0.92	0.1262	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-TA--MT-TC	5	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0.0736	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH322_LUNG	1	1	0.1262	FALSE	462	80	0	856	0	FALSE	ACH-000837
NCIH322_LUNG	VAC14--HYDIN	6	3	VAC14	1365	chr16:70834700:-	HYDIN	106888	chr16:70902691:-	ONLY_REF_SPLICE	YES	24	0	0.27	1	0.0631	0.0315	LOCAL_REARRANGEMENT:-:[6217],VAC14->Oncogene{Bushman},Vac14,_PIKFYVE_complex_component,chr16:70721342-70835064:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH322_LUNG	0.27	1	0.0946	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	6	2	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	8	1	0.5	0.89	0.0631	0.021	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.5	0.89	0.0841	FALSE	344	821	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ATP8	3	14	MT-ND5	2648	chrM:13984:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	2240	0	0.01	1	0.0315	0.1472	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH322_LUNG	0.01	1	0.1787	FALSE	43	37	8	105	0	FALSE	ACH-000837
NCIH322_LUNG	MT-TA--MT-TY	6	2	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0631	0.021	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH322_LUNG	1	1	0.0841	FALSE	13	214	14	42	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO2--MT-CO1	5	5	MT-CO2	1222	chrM:7807:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7	26130	0.59	0	0.0526	0.0526	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH322_LUNG	0	0.59	0.1052	FALSE	36	10	0	27	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	6	1	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	7	1	0.5	0.88	0.0631	0.0105	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	0.5	0.88	0.0736	FALSE	344	821	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO2--MT-CO1	4	8	MT-CO2	1231	chrM:7816:+	MT-CO1	5001	chrM:6220:+	INCL_NON_REF_SPLICE	YES	8	22228	0.6	0	0.0421	0.0841	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH322_LUNG	0	0.6	0.1262	FALSE	36	10	0	27	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO2--MT-CO1	3	12	MT-CO2	1493	chrM:8078:+	MT-CO1	5625	chrM:6844:+	INCL_NON_REF_SPLICE	YES	8	10074	0.65	0	0.0315	0.1262	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH322_LUNG	0	0.65	0.1577	FALSE	36	10	0	27	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO2--MT-CO1	3	12	MT-CO2	1366	chrM:7951:+	MT-CO1	5341	chrM:6560:+	INCL_NON_REF_SPLICE	YES	10	26170	0.6	0	0.0315	0.1262	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH322_LUNG	0	0.6	0.1577	FALSE	36	10	0	27	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO3--MT-ATP6	5	3	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	8	0	0.5	1	0.0526	0.0315	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH322_LUNG	0.5	1	0.0841	FALSE	189	492	56	216	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND6	4	7	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	3960	1	0	0.0421	0.0736	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH322_LUNG	0	1	0.1157	FALSE	26	124	4	93	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ATP8	3	10	MT-ND5	2167	chrM:13503:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	6009	0	0	1	0.0315	0.1052	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH322_LUNG	0	1	0.1367	FALSE	43	37	8	105	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND6	3	10	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0.1052	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH322_LUNG	1	1	0.1367	FALSE	26	124	4	93	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO2--MT-CO1	5	1	MT-CO2	1367	chrM:7952:+	MT-CO1	5874	chrM:7093:+	INCL_NON_REF_SPLICE	YES	10	1013	0.38	0.01	0.0526	0.0105	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH322_LUNG	0.01	0.38	0.0631	FALSE	36	10	0	27	0	FALSE	ACH-000837
NCIH322_LUNG	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0.0105	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH322_LUNG	1	1	0.0631	FALSE	292	1546	117	613	0	FALSE	ACH-000837
NCIH322_LUNG	RP11-519G16.3--SNX1	5	1	RP11-519G16.3	1375	chr15:45740999:+	SNX1	22677	chr15:64415702:+	ONLY_REF_SPLICE	YES	0	77	1	0.07	0.0526	0.0105	RP11-519G16.3->chr15:45740625-45805965:+,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	NCIH322_LUNG	0.07	1	0.0631	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	AFMID--SYNGR2	5	0	AFMID	1117	chr17:76183514:+	SYNGR2	16505	chr17:76166898:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[13790],AFMID->arylformamidase,chr17:76183398-76203782:+,SYNGR2->chr17:76164639-76169608:+,synaptogyrin_2	NCIH322_LUNG	1	1	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	APP--MT-ND2	5	0	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH322_LUNG	1	1	0.0526	FALSE	0	1	0	51	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO2--MT-CO1	3	8	MT-CO2	1286	chrM:7871:+	MT-CO1	5166	chrM:6385:+	INCL_NON_REF_SPLICE	YES	10	24877	0.52	0	0.0315	0.0841	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH322_LUNG	0	0.52	0.1156	FALSE	36	10	0	27	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	1	1	0.0526	FALSE	344	821	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ATP8	3	8	MT-ND5	2303	chrM:13639:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3800	47	0	0.19	0.0315	0.0841	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH322_LUNG	0	0.19	0.1156	FALSE	43	37	8	105	0	FALSE	ACH-000837
NCIH322_LUNG	MT-TA--MT-TY	5	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH322_LUNG	1	1	0.0526	FALSE	13	214	14	42	0	FALSE	ACH-000837
NCIH322_LUNG	TMEM156--LIMCH1	5	0	TMEM156	1281	chr4:39034262:-	LIMCH1	24161	chr4:41600937:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0	TMEM156->chr4:38968365-39034542:-,transmembrane_protein_156,LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+	NCIH322_LUNG	1	1	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-CO2--MT-CO1	3	7	MT-CO2	1282	chrM:7867:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10	26130	0.5	0	0.0315	0.0736	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH322_LUNG	0	0.5	0.1051	FALSE	36	10	0	27	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	3	7	MT-ND5	1664	chrM:13000:+	MT-ND4	6153	chrM:11100:+	INCL_NON_REF_SPLICE	YES	3915	18473	0	0	0.0315	0.0736	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0	0	0.1051	FALSE	45	27	1	22	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	4	3	MT-ND5	2470	chrM:13806:+	MT-ND4	6656	chrM:11603:+	INCL_NON_REF_SPLICE	YES	4141	5398	0	0	0.0421	0.0315	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0	0	0.0736	FALSE	47	28	1	24	0	FALSE	ACH-000837
NCIH322_LUNG	MT-TA--MT-TY	4	3	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0.0315	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH322_LUNG	1	1	0.0736	FALSE	13	214	14	42	0	FALSE	ACH-000837
NCIH322_LUNG	SLAIN2--TMEM255B	4	3	SLAIN2	1807	chr4:48344145:+	TMEM255B	25230	chr13:114502312:+	ONLY_REF_SPLICE	YES	31	3	0.18	0.7	0.0421	0.0315	SLAIN2->SLAIN_motif_family_member_2,chr4:48343339-48428229:+,TMEM255B->chr13:114462216-114514926:+,transmembrane_protein_255B	NCIH322_LUNG	0.18	0.7	0.0736	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	NDUFS4--GZMA	3	6	NDUFS4	1128	chr5:52856590:+	GZMA	13756	chr5:54403953:+	ONLY_REF_SPLICE	YES	116	27	0.07	0.25	0.0315	0.0631	NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+,GZMA->chr5:54398476-54406080:+,granzyme_A	NCIH322_LUNG	0.07	0.25	0.0946	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	NRIP1--AF127936.7	3	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.47	1	0.0315	0.0631	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH322_LUNG	0.47	1	0.0946	FALSE	164	806	69	479	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO2--MT-CO1	3	5	MT-CO2	1216	chrM:7801:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7	26130	0.53	0	0.0315	0.0526	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH322_LUNG	0	0.53	0.0841	FALSE	36	10	0	27	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO2--MT-CO1	3	5	MT-CO2	1256	chrM:7841:+	MT-CO1	5313	chrM:6532:+	INCL_NON_REF_SPLICE	YES	9	24367	0.47	0	0.0315	0.0526	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH322_LUNG	0	0.47	0.0841	FALSE	36	10	0	27	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ATP8	3	5	MT-ND5	2099	chrM:13435:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7340	47	0	0.15	0.0315	0.0526	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH322_LUNG	0	0.15	0.0841	FALSE	43	37	8	105	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	4	1	MT-ND5	2730	chrM:14066:+	MT-ND4	7072	chrM:12019:+	INCL_NON_REF_SPLICE	YES	4	12	0.56	0.29	0.0421	0.0105	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	0.29	0.56	0.0526	FALSE	45	27	1	23	0	FALSE	ACH-000837
NCIH322_LUNG	TOP1--BCKDK	4	1	TOP1	13710	chr20:39729993:+	BCKDK	27051	chr16:31119128:+	ONLY_REF_SPLICE	YES	359	0	0.01	1	0.0421	0.0105	TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I,BCKDK->branched_chain_ketoacid_dehydrogenase_kinase,chr16:31117428-31124110:+	NCIH322_LUNG	0.01	1	0.0526	FALSE	0	0	0	1	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO2--SCAND1	4	0	MT-CO2	1234	chrM:7819:+	SCAND1	7292	chr20:34542028:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,SCAND1->SCAN_domain_containing_1,chr20:34541539-34547394:-	NCIH322_LUNG	1	1	0.0421	FALSE	0	0	0	1	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	1	1	0.0421	FALSE	344	821	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	4	0	MT-ND5	1146	chrM:12482:+	MT-ND4	6992	chrM:11939:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	1	1	0.0421	FALSE	11	15	1	14	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH322_LUNG	1	1	0.0421	FALSE	499	1288	110	792	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH322_LUNG	1	1	0.0421	FALSE	499	1288	110	792	0	FALSE	ACH-000837
NCIH322_LUNG	AMBRA1--DLG2	1	11	AMBRA1	1298	chr11:46615378:-	DLG2	81037	chr11:83182770:-	ONLY_REF_SPLICE	YES	19	15	0.39	0.44	0.0105	0.1157	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	NCIH322_LUNG	0.39	0.44	0.1262	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ATP8	3	3	MT-ND5	1696	chrM:13032:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4963	47	0	0.11	0.0315	0.0315	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH322_LUNG	0	0.11	0.063	FALSE	42	36	7	104	0	FALSE	ACH-000837
NCIH322_LUNG	MT-TA--MT-TY	3	3	MT-TA	1053	chrM:5603:-	MT-TY	4088	chrM:5873:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0.0315	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH322_LUNG	1	1	0.063	FALSE	13	214	14	42	0	FALSE	ACH-000837
NCIH322_LUNG	MT-TA--MT-TY	3	3	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0.0315	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH322_LUNG	1	1	0.063	FALSE	13	214	14	42	0	FALSE	ACH-000837
NCIH322_LUNG	MT-TA--MT-TY	3	2	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0.021	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH322_LUNG	1	1	0.0525	FALSE	13	214	14	42	0	FALSE	ACH-000837
NCIH322_LUNG	MT-CO2--MT-CO1	3	1	MT-CO2	1320	chrM:7905:+	MT-CO1	5908	chrM:7127:+	INCL_NON_REF_SPLICE	YES	10	668	0.29	0.01	0.0315	0.0105	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH322_LUNG	0.01	0.29	0.042	FALSE	36	10	0	27	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ATP8	3	1	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7545	47	0	0.08	0.0315	0.0105	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH322_LUNG	0	0.08	0.042	FALSE	41	30	6	102	0	FALSE	ACH-000837
NCIH322_LUNG	RP11-6N13.1--CTD-2374C24.1	2	5	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.021	0.0526	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH322_LUNG	0.88	1	0.0736	TRUE	1	1	0	17	1	FALSE	ACH-000837
NCIH322_LUNG	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0.0105	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH322_LUNG	1	1	0.042	FALSE	407	2205	196	549	0	FALSE	ACH-000837
NCIH322_LUNG	GUCY1A2--PIWIL4	3	0	GUCY1A2	9368	chr11:106647165:-	PIWIL4	33467	chr11:94301896:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0	GUCY1A2->Oncogene{Bushman},chr11:106544738-106889250:-,guanylate_cyclase_1,_soluble,_alpha_2,PIWIL4->chr11:94277006-94354587:+,piwi_like_RNA-mediated_gene_silencing_4	NCIH322_LUNG	1	1	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH322_LUNG	1	1	0.0315	FALSE	344	821	44	306	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ATP8	3	0	MT-ND5	1055	chrM:12391:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH322_LUNG	1	1	0.0315	FALSE	34	25	3	77	0	FALSE	ACH-000837
NCIH322_LUNG	MT-ND5--MT-ND4	3	0	MT-ND5	2341	chrM:13677:+	MT-ND4	7094	chrM:12041:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH322_LUNG	1	1	0.0315	FALSE	45	28	1	23	0	FALSE	ACH-000837
NCIH322_LUNG	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH322_LUNG	1	1	0.0315	TRUE	0	0	0	434	0	FALSE	ACH-000837
NCIH322_LUNG	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH322_LUNG	1	1	0.0315	TRUE	0	0	0	434	0	FALSE	ACH-000837
NCIH322_LUNG	PDZD8--CACUL1	3	0	PDZD8	3235	chr10:119100491:-	CACUL1	33738	chr10:120433972:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0	PDZD8->PDZ_domain_containing_8,chr10:119040000-119134978:-,CACUL1->CDK2_associated_cullin_domain_1,chr10:120433679-120514761:-	NCIH322_LUNG	1	1	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	PTK2--SLC45A4	3	0	PTK2	15654	chr8:141874411:-	SLC45A4	66518	chr8:142264728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4	NCIH322_LUNG	1	1	0.0315	TRUE	0	1	0	1	1	TRUE	ACH-000837
NCIH322_LUNG	RP11-519G16.3--SNX1	2	2	RP11-519G16.3	2548	chr15:45742488:+	SNX1	23721	chr15:64418278:+	ONLY_REF_SPLICE	YES	1	84	0.8	0.05	0.021	0.021	RP11-519G16.3->chr15:45740625-45805965:+,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	NCIH322_LUNG	0.05	0.8	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	RP11-519G16.3--SNX1	2	2	RP11-519G16.3	4713	chr15:45752767:+	SNX1	23721	chr15:64418278:+	ONLY_REF_SPLICE	YES	2	84	0.67	0.05	0.021	0.021	RP11-519G16.3->chr15:45740625-45805965:+,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	NCIH322_LUNG	0.05	0.67	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	POP1--HRSP12	2	1	POP1	7619	chr8:99146887:+	HRSP12	24455	chr8:99120979:-	ONLY_REF_SPLICE	YES	54	147	0.05	0.02	0.021	0.0105	LOCAL_INVERSION:+:-:[56],POP1->POP1_homolog,_ribonuclease_P/MRP_subunit,chr8:99129525-99172062:+,HRSP12->chr8:99114572-99129469:-	NCIH322_LUNG	0.02	0.05	0.0315	TRUE	0	0	0	1	0	FALSE	ACH-000837
NCIH322_LUNG	RP11-6N13.1--CTD-2374C24.1	1	5	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0105	0.0526	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH322_LUNG	1	1	0.0631	TRUE	5	12	0	42	0	FALSE	ACH-000837
NCIH322_LUNG	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0105	0.0526	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH322_LUNG	0.86	1	0.0631	FALSE	192	492	57	212	0	FALSE	ACH-000837
NCIH322_LUNG	VTI1A--RP11-57H14.3	2	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	35	0	0.08	1	0.021	0.0105	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH322_LUNG	0.08	1	0.0315	FALSE	272	151	14	158	0	FALSE	ACH-000837
NCIH322_LUNG	WWTR1--RP11-114H23.1	2	1	WWTR1	15384	chr3:149260122:-	RP11-114H23.1	28735	chr12:76171310:-	ONLY_REF_SPLICE	YES	142	0	0.02	1	0.021	0.0105	WWTR1->WW_domain_containing_transcription_regulator_1,chr3:149235022-149454501:-,RP11-114H23.1->chr12:75956982-76377795:-	NCIH322_LUNG	0.02	1	0.0315	TRUE	0	0	0	1	0	FALSE	ACH-000837
NCIH322_LUNG	CUX1--PTCD1	2	0	CUX1	10206	chr7:101671425:+	PTCD1	61728	chr7:99032891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,PTCD1->chr7:99014362-99063787:-,pentatricopeptide_repeat_domain_1	NCIH322_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	REL--UNKL	2	0	REL	4714	chr2:61128218:+	UNKL	43089	chr16:1421612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	REL->Oncogene{Bushman},REL_proto-oncogene,_NF-kB_subunit,chr2:61108656-61158745:+,UNKL->chr16:1413206-1464752:-,unkempt_family_like_zinc_finger	NCIH322_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	RP11-357C3.3--ARHGEF9	2	0	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	27535	chrX:62898452:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	NCIH322_LUNG	1	1	0.021	TRUE	0	2	0	6	0	TRUE	ACH-000837
NCIH322_LUNG	RPL39L--PKP2	2	0	RPL39L	3615	chr3:186857001:-	PKP2	22834	chr12:32955490:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	RPL39L->chr3:186838736-186898696:-,ribosomal_protein_L39_like,PKP2->chr12:32943679-33049774:-,plakophilin_2	NCIH322_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	TES--PAGE1	2	0	TES	1242	chr7:115850788:+	PAGE1	15453	chrX:49458804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,PAGE1->PAGE_family_member_1,chrX:49452053-49460596:-	NCIH322_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	ZNF592--AUTS2	2	0	ZNF592	8867	chr15:85341276:+	AUTS2	23568	chr7:69364272:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	{Klijn_CCL:Lung=1},ZNF592->chr15:85291866-85349659:+,zinc_finger_protein_592,AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+	NCIH322_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	UQCC1--RPN2	1	3	UQCC1	11119	chr20:33954360:-	RPN2	35241	chr20:35842163:+	ONLY_REF_SPLICE	NO	221	1346	0.02	0	0.0105	0.0315	UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,RPN2->chr20:35806813-35870022:+,ribophorin_II	NCIH322_LUNG	0	0.02	0.042	FALSE	0	0	0	1	0	FALSE	ACH-000837
NCIH322_LUNG	AMBRA1--DLG2	1	2	AMBRA1	1298	chr11:46615378:-	DLG2	83312	chr11:83177860:-	ONLY_REF_SPLICE	NO	19	28	0.14	0.1	0.0105	0.021	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	NCIH322_LUNG	0.1	0.14	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	WWTR1--RP11-114H23.2	1	2	WWTR1	15384	chr3:149260122:-	RP11-114H23.2	28755	chr12:76088550:-	ONLY_REF_SPLICE	YES	142	8	0.02	0.27	0.0105	0.021	WWTR1->WW_domain_containing_transcription_regulator_1,chr3:149235022-149454501:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH322_LUNG	0.02	0.27	0.0315	TRUE	0	0	0	1	0	FALSE	ACH-000837
NCIH322_LUNG	KDM4B--SH3GL1	1	1	KDM4B	28507	chr19:5144913:+	SH3GL1	41139	chr19:4366991:-	ONLY_REF_SPLICE	YES	11	54	0.15	0.04	0.0105	0.0105	KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,SH3GL1->Oncogene{Bushman},SH3_domain_containing_GRB2_like_1,chr19:4360367-4400544:-	NCIH322_LUNG	0.04	0.15	0.021	TRUE	1	0	0	1	0	TRUE	ACH-000837
NCIH322_LUNG	LTBP1--BAZ1B	1	1	LTBP1	5386	chr2:33335818:+	BAZ1B	48584	chr7:72913028:-	ONLY_REF_SPLICE	YES	37	234	0.05	0.01	0.0105	0.0105	LTBP1->chr2:33172039-33624576:+,latent_transforming_growth_factor_beta_binding_protein_1,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	NCIH322_LUNG	0.01	0.05	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000837
NCIH322_LUNG	MYH9--SHANK3	1	1	MYH9	1212	chr22:36783852:-	SHANK3	46431	chr22:51115050:+	ONLY_REF_SPLICE	YES	481	7	0	0.22	0.0105	0.0105	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,SHANK3->SH3_and_multiple_ankyrin_repeat_domains_3,chr22:51112843-51171726:+	NCIH322_LUNG	0	0.22	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000837
NCIH322_LUNG	POLA2--PSMG3	1	1	POLA2	16555	chr11:65063461:+	PSMG3	25113	chr7:1608996:-	ONLY_REF_SPLICE	YES	123	65	0.02	0.03	0.0105	0.0105	POLA2->chr11:65029233-65073060:+,polymerase_(DNA)_alpha_2,_accessory_subunit,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	NCIH322_LUNG	0.02	0.03	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000837
NCIH322_LUNG	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0105	0.0105	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH322_LUNG	1	1	0.021	FALSE	93	270	15	244	0	FALSE	ACH-000837
NCIH322_LUNG	SAMD12--RNF139	1	1	SAMD12	2373	chr8:119592954:-	RNF139	23373	chr8:125498072:+	ONLY_REF_SPLICE	YES	17	69	0.11	0.03	0.0105	0.0105	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,RNF139->Oncogene{Bushman},chr8:125486979-125500155:+,ring_finger_protein_139	NCIH322_LUNG	0.03	0.11	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000837
NCIH322_LUNG	VPS13B--STK3	1	1	VPS13B	22917	chr8:100287482:+	STK3	103237	chr8:99608397:-	ONLY_REF_SPLICE	YES	10	212	0.17	0.01	0.0105	0.0105	GTEx&tcga_normals:3/3694=0.08%,GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Whole_Blood=1},LOCAL_INVERSION:+:-:[70439],VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast),STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3	NCIH322_LUNG	0.01	0.17	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000837
NCIH322_LUNG	WWTR1--RP11-114H23.1	1	1	WWTR1	15384	chr3:149260122:-	RP11-114H23.1	33385	chr12:76025094:-	ONLY_REF_SPLICE	YES	142	1	0.01	0.67	0.0105	0.0105	WWTR1->WW_domain_containing_transcription_regulator_1,chr3:149235022-149454501:-,RP11-114H23.1->chr12:75956982-76377795:-	NCIH322_LUNG	0.01	0.67	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000837
NCIH322_LUNG	ZNF592--AUTS2	1	1	ZNF592	10799	chr15:85343208:+	AUTS2	23568	chr7:69364272:+	ONLY_REF_SPLICE	YES	104	1	0.02	0.67	0.0105	0.0105	{Klijn_CCL:Lung=1},ZNF592->chr15:85291866-85349659:+,zinc_finger_protein_592,AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+	NCIH322_LUNG	0.02	0.67	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000837
SNU1041_UPPER_AERODIGESTIVE_TRACT	VCL--ZSWIM8	231	157	VCL	1262	chr10:75758133:+	ZSWIM8	37448	chr10:75553905:+	ONLY_REF_SPLICE	YES	267	51	0.59	0.88	2.2399	1.5223	VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ZSWIM8->chr10:75545340-75561551:+,zinc_finger_SWIM-type_containing_8	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.59	0.88	3.7622	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	TMEM230--SDC4	213	110	TMEM230	5015	chr20:5086834:-	SDC4	11208	chr20:43964560:-	ONLY_REF_SPLICE	YES	331	65	0.49	0.83	2.0653	1.0666	TMEM230->chr20:5080486-5093749:-,transmembrane_protein_230,SDC4->Oncogene{Bushman},chr20:43953928-43977064:-,syndecan_4	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.49	0.83	3.1319	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	89	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.863	0.2327	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	1.0957	TRUE	508	994	45	981	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	POU2F1--RPLP0	71	3	POU2F1	1132	chr1:167190197:+	RPLP0	45302	chr12:120636713:-	INCL_NON_REF_SPLICE	YES	3	6318	0.96	0.01	0.6884	0.0291	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.01	0.96	0.7175	TRUE	0	0	0	1	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	195	MT-ND4	1747	chrM:11506:+	MT-ND4L	5523	chrM:10614:+	INCL_NON_REF_SPLICE	YES	3467	1	0.05	0.99	0.0291	1.8908	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.05	0.99	1.9199	FALSE	344	827	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	187	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	13	1	0.94	0.99	0.0291	1.8132	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.94	0.99	1.8423	FALSE	344	826	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	47	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	203	2	0.19	0.96	0.4557	0.0194	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.19	0.96	0.4751	TRUE	519	3926	326	965	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	138	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	8	1	0.95	0.99	0.0679	1.3381	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.95	0.99	1.406	FALSE	344	821	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	139	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	12	0	0.92	1	0.0485	1.3478	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.92	1	1.3963	FALSE	344	826	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	137	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	37	0	0.79	1	0.0291	1.3284	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.79	1	1.3575	FALSE	344	827	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	OR51S1--TP53I11	36	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3491	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.3491	TRUE	402	216	10	229	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	32	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3103	0.0388	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.3491	FALSE	462	80	0	856	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	KLHL2--SLC7A11	31	7	KLHL2	10117	chr4:166184515:+	SLC7A11	25832	chr4:139163211:-	INCL_NON_REF_SPLICE	YES	77	63	0.33	0.38	0.3006	0.0679	KLHL2->chr4:166128770-166244308:+,kelch_like_family_member_2,SLC7A11->chr4:139085251-139163503:-,solute_carrier_family_7_member_11	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.33	0.38	0.3685	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	16	33	MT-CO3	1123	chrM:9329:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.1551	0.32	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.92	1	0.4751	FALSE	189	492	56	216	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	TMEM230--SDC4	12	49	TMEM230	3718	chr20:5089978:-	SDC4	11208	chr20:43964560:-	ONLY_REF_SPLICE	YES	415	65	0.13	0.48	0.1164	0.4751	TMEM230->chr20:5080486-5093749:-,transmembrane_protein_230,SDC4->Oncogene{Bushman},chr20:43953928-43977064:-,syndecan_4	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.13	0.48	0.5915	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	23	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.223	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.223	FALSE	499	1288	110	792	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	RAPGEF2--NAF1	20	7	RAPGEF2	1054	chr4:160025383:+	NAF1	46554	chr4:164085543:-	ONLY_REF_SPLICE	YES	2	17	0.93	0.61	0.1939	0.0679	RAPGEF2->Rap_guanine_nucleotide_exchange_factor_2,chr4:160025330-160281321:+,NAF1->chr4:164031225-164088073:-,nuclear_assembly_factor_1_ribonucleoprotein	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.61	0.93	0.2618	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	17	16	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.1648	0.1551	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.94	1	0.3199	FALSE	407	2205	196	549	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	26	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6505	0	0.01	1	0.1358	0.2521	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.3879	FALSE	344	827	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	18	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	7	0.93	0.8	0.1745	0.097	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.8	0.93	0.2715	FALSE	515	4851	409	746	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	CTD-2008L17.1--RP11-456O19.2	17	8	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	3	0	0.89	1	0.1648	0.0776	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.89	1	0.2424	FALSE	33	240	4	98	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	TSPAN2--NGF	17	6	TSPAN2	2240	chr1:115615526:-	NGF	15521	chr1:115836371:-	ONLY_REF_SPLICE	YES	10	0	0.7	1	0.1648	0.0582	TSPAN2->chr1:115590632-115632121:-,tetraspanin_2,NGF->chr1:115828539-115880857:-,nerve_growth_factor	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.7	1	0.223	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	41	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	438	0	0.1	1	0.0679	0.3976	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.1	1	0.4655	FALSE	344	827	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	8	33	MT-CO3	1322	chrM:9528:+	MT-ATP6	5065	chrM:8807:+	INCL_NON_REF_SPLICE	NO	10	87	0.8	0.32	0.0776	0.32	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.32	0.8	0.3976	FALSE	189	492	56	216	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	16	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1551	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.1551	FALSE	416	2512	207	587	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	15	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1454	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.1454	FALSE	230	198	14	283	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	14	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1358	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.1358	TRUE	465	1949	224	605	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	6	31	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	6	6	0.86	0.86	0.0582	0.3006	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.86	0.86	0.3588	FALSE	189	492	56	216	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	43	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.0291	0.4169	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.94	1	0.446	FALSE	344	821	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	HSP90AB1--MT-RNR2	13	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2656	0	0.01	1	0.1261	0.0194	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.1455	FALSE	13	9	0	364	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	26	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	255	0	0.11	1	0.0679	0.2521	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.32	FALSE	344	827	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	41	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	17	0	0.72	1	0.0291	0.3976	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.72	1	0.4267	FALSE	344	826	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	9	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	27	30	0.46	0.43	0.0873	0.1358	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.43	0.46	0.2231	TRUE	267	562	48	632	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-RNR2--MT-TV	8	17	MT-RNR2	1060	chrM:1730:+	MT-TV	5583	chrM:1625:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0776	0.1648	LOCAL_REARRANGEMENT:+:[1],MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA,MT-TV->chrM:1602-1670:+,mitochondrially_encoded_tRNA_valine	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.2424	FALSE	56	134	3	5	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	9	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	7	1	0.75	0.0873	0.1164	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.75	1	0.2037	FALSE	467	2173	244	435	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	35	MT-CO3	1222	chrM:9428:+	MT-ATP6	4743	chrM:8485:+	INCL_NON_REF_SPLICE	NO	10	0	0.79	1	0.0291	0.3394	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.79	1	0.3685	FALSE	189	492	56	216	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	11	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12223	5	0	0.74	0.1067	0.0291	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0.74	0.1358	FALSE	231	217	16	283	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	7	18	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0679	0.1745	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.2424	FALSE	192	492	57	212	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	27	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	6	0	0.84	1	0.0388	0.2618	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.84	1	0.3006	FALSE	344	821	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-CO1	9	5	MT-ND4	1773	chrM:11532:+	MT-CO1	5916	chrM:6441:+	INCL_NON_REF_SPLICE	YES	12221	17277	0	0	0.0873	0.0485	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0	0.1358	FALSE	19	92	11	16	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	10	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.097	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.097	FALSE	230	193	14	283	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	12	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	36	0	0.35	1	0.0679	0.1164	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.35	1	0.1843	FALSE	344	827	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	22	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	4	4	0.87	0.87	0.0388	0.2133	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.87	0.87	0.2521	FALSE	189	492	56	216	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	9	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10202	18942	0	0	0.0873	0.0097	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0	0.097	FALSE	183	104	9	328	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	20	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	5	0.96	0.83	0.0388	0.1939	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.83	0.96	0.2327	FALSE	189	492	56	216	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	TMEM230--SDC4	2	27	TMEM230	5015	chr20:5086834:-	SDC4	12347	chr20:43961709:-	ONLY_REF_SPLICE	YES	331	420	0.08	0.06	0.0194	0.2618	TMEM230->chr20:5080486-5093749:-,transmembrane_protein_230,SDC4->Oncogene{Bushman},chr20:43953928-43977064:-,syndecan_4	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.06	0.08	0.2812	TRUE	0	0	0	1	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	21	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	NO	16	0	0.6	1	0.0291	0.2036	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.6	1	0.2327	FALSE	344	826	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	7	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.71	1	0.0679	0.0485	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.71	1	0.1164	FALSE	499	1288	110	792	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MET--AC139100.2	7	4	MET	25353	chr7:116436464:+	AC139100.2	37683	chr18:77933763:+	INCL_NON_REF_SPLICE	YES	96	0	0.1	1	0.0679	0.0388	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,AC139100.2->chr18:77905807-77936315:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.1	1	0.1067	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	12	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0.1164	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.1649	FALSE	344	821	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	KLHL2--SLC7A11	6	7	KLHL2	10113	chr4:166184511:+	SLC7A11	25832	chr4:139163211:-	INCL_NON_REF_SPLICE	YES	67	63	0.16	0.17	0.0582	0.0679	KLHL2->chr4:166128770-166244308:+,kelch_like_family_member_2,SLC7A11->chr4:139085251-139163503:-,solute_carrier_family_7_member_11	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.16	0.17	0.1261	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MET--AC139100.2	7	3	MET	24985	chr7:116436096:+	AC139100.2	37659	chr18:77933739:+	INCL_NON_REF_SPLICE	YES	167	0	0.06	1	0.0679	0.0291	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,AC139100.2->chr18:77905807-77936315:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.06	1	0.097	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	6	6	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	4	2	0.75	0.86	0.0582	0.0582	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.75	0.86	0.1164	FALSE	189	492	56	216	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	7	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	6	0	0.57	1	0.0679	0.0097	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.57	1	0.0776	FALSE	189	492	56	216	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	6	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0582	0.0388	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.097	FALSE	462	80	0	856	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	5	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	27	35	0.31	0.26	0.0485	0.0679	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.26	0.31	0.1164	TRUE	267	562	48	632	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	FTH1--ACTB	6	3	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	4953	2	0	0.82	0.0582	0.0291	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0.82	0.0873	FALSE	1	0	0	97	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	FTH1--ACTB	6	2	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	4354	2	0	0.8	0.0582	0.0194	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0.8	0.0776	FALSE	1	0	0	97	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	6	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	12280	1	0	0.92	0.0485	0.0582	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0.92	0.1067	FALSE	231	217	16	283	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	4	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	12996	1	0	0.9	0.0485	0.0388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0.9	0.0873	FALSE	231	217	16	283	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	12	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	17	0	0.47	1	0.0291	0.1164	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.47	1	0.1455	FALSE	344	826	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	5	4	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0.0388	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0873	FALSE	462	80	0	856	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.0776	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.1164	FALSE	462	80	0	856	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	2	16	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.9	1	0.0194	0.1551	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.9	1	0.1745	FALSE	275	511	55	178	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	2	MT-ND4	1452	chrM:11211:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13437	5	0	0.58	0.0485	0.0194	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0.58	0.0679	FALSE	231	217	16	283	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-CO1	3	10	MT-ND4	2203	chrM:11962:+	MT-CO1	5550	chrM:6075:+	INCL_NON_REF_SPLICE	YES	5230	9710	0	0	0.0291	0.097	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0	0.1261	FALSE	19	92	10	16	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	RAPGEF2--NAF1	5	2	RAPGEF2	1054	chr4:160025383:+	NAF1	50093	chr4:164069586:-	ONLY_REF_SPLICE	YES	2	22	0.78	0.24	0.0485	0.0194	RAPGEF2->Rap_guanine_nucleotide_exchange_factor_2,chr4:160025330-160281321:+,NAF1->chr4:164031225-164088073:-,nuclear_assembly_factor_1_ribonucleoprotein	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.24	0.78	0.0679	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	5	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12250	18761	0	0	0.0485	0.0097	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0	0.0582	FALSE	183	104	9	328	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	1	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0485	0.0097	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.6	1	0.0582	FALSE	344	821	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.0485	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0873	FALSE	499	1288	110	792	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	8	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	42	1	0.21	0.92	0.0291	0.0776	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.21	0.92	0.1067	FALSE	213	207	15	279	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	8	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	12073	0	0	1	0.0291	0.0776	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	1	0.1067	FALSE	231	215	16	283	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	4	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2359	29	0	0.22	0.0388	0.0388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0.22	0.0776	FALSE	216	209	16	281	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-CO3	4	4	MT-ND5	2744	chrM:14080:+	MT-CO3	6045	chrM:9439:+	INCL_NON_REF_SPLICE	YES	0	12525	1	0	0.0388	0.0388	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	1	0.0776	FALSE	0	15	2	17	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-CO3	4	4	MT-ND5	2591	chrM:13927:+	MT-CO3	6171	chrM:9565:+	INCL_NON_REF_SPLICE	YES	2258	14700	0	0	0.0388	0.0388	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0	0.0776	FALSE	0	15	2	18	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	FTH1--ACTB	4	3	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	5198	2	0	0.78	0.0388	0.0291	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0.78	0.0679	FALSE	1	0	0	97	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	3	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.0291	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0679	FALSE	462	80	0	856	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	POU2F1--RPLP0	4	3	POU2F1	1130	chr1:167190195:+	RPLP0	45311	chr12:120636704:-	INCL_NON_REF_SPLICE	YES	0	6023	1	0	0.0388	0.0291	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	1	0.0679	FALSE	0	0	0	1	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	BRI3BP--UBC	4	2	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	16	58	0.27	0.09	0.0388	0.0194	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.09	0.27	0.0582	TRUE	5	99	5	34	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-CO1	3	6	MT-ND4	2320	chrM:12079:+	MT-CO1	6029	chrM:6554:+	INCL_NON_REF_SPLICE	YES	2	19116	0.82	0	0.0291	0.0582	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0.82	0.0873	FALSE	19	91	11	16	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0388	0.0194	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0582	FALSE	344	821	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	TMEM230--SDC4	3	6	TMEM230	1143	chr20:5093607:-	SDC4	11208	chr20:43964560:-	ONLY_REF_SPLICE	YES	90	65	0.09	0.12	0.0291	0.0582	TMEM230->chr20:5080486-5093749:-,transmembrane_protein_230,SDC4->Oncogene{Bushman},chr20:43953928-43977064:-,syndecan_4	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.09	0.12	0.0873	TRUE	0	0	0	1	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	KRT5--MT-CO3	4	1	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	2156	14081	0	0	0.0388	0.0097	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0	0.0485	FALSE	0	0	0	18	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MIR205HG--C9orf3	4	1	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	589	353	0.01	0.01	0.0388	0.0097	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.01	0.01	0.0485	FALSE	86	303	14	25	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10206	18761	0	0	0.0388	0.0097	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0	0.0485	FALSE	183	104	9	328	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	4	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	10291	18386	0	0	0.0388	0.0097	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0	0.0485	FALSE	183	104	9	328	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	1	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.0388	0.0097	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.56	1	0.0485	FALSE	189	492	56	216	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	1	MT-CO3	1158	chrM:9364:+	MT-ATP6	5461	chrM:9203:+	INCL_NON_REF_SPLICE	NO	10	0	0.33	1	0.0388	0.0097	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.33	1	0.0485	FALSE	189	492	56	216	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	6	0	0.45	1	0.0388	0.0097	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.45	1	0.0485	FALSE	344	821	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	5	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	4	0	0.67	1	0.0291	0.0485	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.67	1	0.0776	FALSE	499	1288	110	792	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	4	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.0388	0.0097	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.62	1	0.0485	FALSE	164	806	69	479	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	YWHAE--CRK	4	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1732	113	0	0.04	0.0388	0.0097	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0.04	0.0485	FALSE	6	50	7	115	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	C20orf27--MT-ND4L	4	0	C20orf27	7217	chr20:3734540:-	MT-ND4L	10604	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	C20orf27->chr20:3734155-3749034:-,chromosome_20_open_reading_frame_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0388	FALSE	0	0	0	6	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	CALM3--MT-ND4L	4	0	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0388	FALSE	1	1	0	107	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	IGFBP7--KRT17	4	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0388	TRUE	0	0	0	9	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0388	FALSE	344	821	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0388	FALSE	344	821	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-CO3	3	4	MT-ND5	2730	chrM:14066:+	MT-CO3	6178	chrM:9572:+	INCL_NON_REF_SPLICE	YES	1	14472	0.88	0	0.0291	0.0388	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0.88	0.0679	FALSE	0	15	2	17	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0388	FALSE	499	1288	110	792	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0388	FALSE	499	1288	110	792	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	NCOR2--UBC	4	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0388	TRUE	145	312	16	51	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0388	TRUE	458	1351	185	561	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	SCARB1--UBC	4	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0388	TRUE	55	66	6	101	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-CO1	3	3	MT-ND4	1409	chrM:11168:+	MT-CO1	5512	chrM:6037:+	INCL_NON_REF_SPLICE	NO	13744	5648	0	0	0.0291	0.0291	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0	0.0582	FALSE	19	92	10	16	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-CO3	3	3	MT-ND5	2607	chrM:13943:+	MT-CO3	6185	chrM:9579:+	INCL_NON_REF_SPLICE	YES	2038	14336	0	0	0.0291	0.0291	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0	0.0582	FALSE	0	15	2	18	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	2	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3433	19253	0	0	0.0291	0.0194	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0	0.0485	FALSE	183	104	9	328	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	IGFBP7--KRT17	3	1	IGFBP7	1160	chr4:57976392:-	KRT17	10557	chr17:39780813:-	INCL_NON_REF_SPLICE	NO	0	5	1	0.44	0.0291	0.0097	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.44	1	0.0388	TRUE	0	0	0	9	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	1	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	10	0	0.29	1	0.0291	0.0097	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.29	1	0.0388	FALSE	189	492	56	216	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	1	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0291	0.0097	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.0388	FALSE	189	492	56	216	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	11400	5	0	0.44	0.0291	0.0097	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0.44	0.0388	FALSE	231	205	14	283	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	1	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	12605	1	0	0.8	0.0291	0.0097	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0.8	0.0388	FALSE	231	205	14	283	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	NDUFA4--PHF14	3	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	825	31	0	0.11	0.0291	0.0097	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0.11	0.0388	FALSE	19	32	3	60	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0291	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0291	FALSE	189	492	56	216	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0291	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0291	FALSE	344	821	44	306	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0291	FALSE	292	1546	117	613	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	3	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0291	FALSE	125	705	46	456	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	TMEM230--SDC4	1	8	TMEM230	3718	chr20:5089978:-	SDC4	12347	chr20:43961709:-	ONLY_REF_SPLICE	YES	415	420	0.02	0.02	0.0097	0.0776	TMEM230->chr20:5080486-5093749:-,transmembrane_protein_230,SDC4->Oncogene{Bushman},chr20:43953928-43977064:-,syndecan_4	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.02	0.02	0.0873	TRUE	0	0	0	1	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	AAMP--ARPC2	2	0	AAMP	1876	chr2:219134105:-	ARPC2	22279	chr2:219114087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	{Klijn_CCL:Ovary=1},LOCAL_INVERSION:-:+:[9771],AAMP->angio_associated_migratory_cell_protein,chr2:219128850-219134980:-,ARPC2->actin_related_protein_2/3_complex_subunit_2,chr2:219081817-219119079:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	ATF2--RPL30	2	0	ATF2	1333	chr2:176032778:-	RPL30	25840	chr8:99057627:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	ATXN10--DCUN1D5	2	0	ATXN10	8664	chr22:46114373:+	DCUN1D5	30402	chr11:102937296:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	ATXN10->ataxin_10,chr22:46067678-46241187:+,DCUN1D5->chr11:102932805-102962944:-,defective_in_cullin_neddylation_1_domain_containing_5	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	C7orf50--SUN1	2	0	C7orf50	3078	chr7:1166893:-	SUN1	21146	chr7:872142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0194	TRUE	0	1	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	CARKD--ANKRD10	2	0	CARKD	1114	chr13:111267994:+	ANKRD10	17019	chr13:111563117:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	CARKD->chr13:111267881-111292340:+,ANKRD10->ankyrin_repeat_domain_10,chr13:111530887-111567416:-	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	NCOR2--UBC	2	0	NCOR2	2329	chr12:125020111:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0194	TRUE	48	117	12	14	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0194	FALSE	16	356	14	466	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0194	TRUE	53	396	64	110	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	TMEM123--BIRC2	2	0	TMEM123	5695	chr11:102319543:-	BIRC2	22451	chr11:102248227:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},{Klijn_CCL:Brain=1},LOCAL_INVERSION:-:+:[17662],TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	1	1	0.0194	TRUE	1	3	0	8	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	CCND1--TPCN2	1	2	CCND1	2641	chr11:69458014:+	TPCN2	15755	chr11:68825046:+	ONLY_REF_SPLICE	NO	2761	66	0	0.04	0.0097	0.0194	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0.04	0.0291	FALSE	0	0	0	1	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	CPSF6--C9orf3	1	2	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	NO	129	353	0.02	0.01	0.0097	0.0194	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.0291	FALSE	53	99	2	44	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	TSPAN2--NGF	1	2	TSPAN2	2240	chr1:115615526:-	NGF	16645	chr1:115829428:-	ONLY_REF_SPLICE	YES	10	22	0.23	0.12	0.0097	0.0194	TSPAN2->chr1:115590632-115632121:-,tetraspanin_2,NGF->chr1:115828539-115880857:-,nerve_growth_factor	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.12	0.23	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	ADAM9--BIRC2	1	1	ADAM9	1292	chr8:38854679:+	BIRC2	34471	chr11:102221575:+	ONLY_REF_SPLICE	YES	611	788	0	0	0.0097	0.0097	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	CCND1--CTTN	1	1	CCND1	1425	chr11:69456279:+	CTTN	21750	chr11:70265852:+	ONLY_REF_SPLICE	NO	2516	2320	0	0	0.0097	0.0097	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	CD44--PDHX	1	1	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	339	90	0.01	0.02	0.0097	0.0097	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.0194	FALSE	0	20	0	35	2	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	KLHL2--SLC7A11	1	1	KLHL2	1285	chr4:166129054:+	SLC7A11	33735	chr4:139104459:-	ONLY_REF_SPLICE	YES	13	41	0.13	0.05	0.0097	0.0097	KLHL2->chr4:166128770-166244308:+,kelch_like_family_member_2,SLC7A11->chr4:139085251-139163503:-,solute_carrier_family_7_member_11	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.05	0.13	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	KLHL2--SLC7A11	1	1	KLHL2	10113	chr4:166184511:+	SLC7A11	33735	chr4:139104459:-	ONLY_REF_SPLICE	NO	67	41	0.03	0.05	0.0097	0.0097	KLHL2->chr4:166128770-166244308:+,kelch_like_family_member_2,SLC7A11->chr4:139085251-139163503:-,solute_carrier_family_7_member_11	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.03	0.05	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	MB21D2--FGF12	1	1	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	16	1	0.11	0.67	0.0097	0.0097	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.11	0.67	0.0194	FALSE	0	17	0	46	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	PINX1--RP1L1	1	1	PINX1	6234	chr8:10683662:-	RP1L1	17312	chr8:10480730:-	ONLY_REF_SPLICE	YES	41	0	0.05	1	0.0097	0.0097	NEIGHBORS[52776],PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.05	1	0.0194	FALSE	1	8	0	15	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	RP11-624L4.1--RP11-265N7.1	1	1	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	9	0	0.18	1	0.0097	0.0097	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	SNU1041_UPPER_AERODIGESTIVE_TRACT	0.18	1	0.0194	FALSE	0	20	1	20	0	FALSE	ACH-000618
SNU1041_UPPER_AERODIGESTIVE_TRACT	TMEM123--BIRC2	1	1	TMEM123	5695	chr11:102319543:-	BIRC2	21208	chr11:102239037:+	ONLY_REF_SPLICE	YES	3700	774	0	0	0.0097	0.0097	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},{Klijn_CCL:Brain=1},LOCAL_INVERSION:-:+:[17662],TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	SNU1041_UPPER_AERODIGESTIVE_TRACT	0	0	0.0194	FALSE	0	1	0	1	0	FALSE	ACH-000618
HT1197_URINARY_TRACT	NPEPPS--C8orf46	438	349	NPEPPS	2614	chr17:45608921:+	C8orf46	46602	chr8:67417610:+	ONLY_REF_SPLICE	YES	618	1	0.56	1	4.9955	3.9804	NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+,C8orf46->chr8:67372238-67430759:+,chromosome_8_open_reading_frame_46	HT1197_URINARY_TRACT	0.56	1	8.9759	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	LINC00152--AC093616.4	63	40	LINC00152	14196	chr2:87906288:+	AC093616.4	17233	chr2:88000503:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7185	0.4562	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	HT1197_URINARY_TRACT	1	1	1.1747	FALSE	0	0	0	14	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	TIMM23B--LINC00843	62	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7071	0.365	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HT1197_URINARY_TRACT	1	1	1.0721	TRUE	508	994	45	981	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	NR2C1--FGD6	46	37	NR2C1	1324	chr12:95467156:-	FGD6	36559	chr12:95507477:-	ONLY_REF_SPLICE	YES	71	79	0.54	0.51	0.5246	0.422	LOCAL_REARRANGEMENT:-:[3046],NR2C1->chr12:95414005-95467479:-,nuclear_receptor_subfamily_2_group_C_member_1,FGD6->FYVE,_RhoGEF_and_PH_domain_containing_6,chr12:95470525-95611258:-	HT1197_URINARY_TRACT	0.51	0.54	0.9466	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	TIMM23--RP11-464F9.1	38	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	174	4	0.19	0.91	0.4334	0.0228	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HT1197_URINARY_TRACT	0.19	0.91	0.4562	TRUE	519	3926	326	965	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	CTD-2410N18.5--CDKL3	1	139	CTD-2410N18.5	1312	chr5:133561451:-	CDKL3	11624	chr5:133657594:-	ONLY_REF_SPLICE	NO	1	1	0.99	0.99	0.0114	1.5853	NEIGHBORS_OVERLAP:-:-:[20457],CTD-2410N18.5->chr5:133502861-133561762:-,CDKL3->chr5:133541305-133706738:-,cyclin_dependent_kinase_like_3	HT1197_URINARY_TRACT	0.99	0.99	1.5967	FALSE	0	0	0	1	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	CTD-2410N18.5--CDKL3	1	136	CTD-2410N18.5	1312	chr5:133561451:-	CDKL3	12737	chr5:133655188:-	ONLY_REF_SPLICE	YES	1	4	0.99	0.97	0.0114	1.5511	NEIGHBORS_OVERLAP:-:-:[20457],CTD-2410N18.5->chr5:133502861-133561762:-,CDKL3->chr5:133541305-133706738:-,cyclin_dependent_kinase_like_3	HT1197_URINARY_TRACT	0.97	0.99	1.5625	FALSE	0	0	0	1	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	CTD-2410N18.5--CDKL3	1	133	CTD-2410N18.5	1312	chr5:133561451:-	CDKL3	18114	chr5:133640258:-	ONLY_REF_SPLICE	NO	1	5	0.99	0.96	0.0114	1.5169	NEIGHBORS_OVERLAP:-:-:[20457],CTD-2410N18.5->chr5:133502861-133561762:-,CDKL3->chr5:133541305-133706738:-,cyclin_dependent_kinase_like_3	HT1197_URINARY_TRACT	0.96	0.99	1.5283	FALSE	0	0	0	1	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	MT-ND6--MT-TE	29	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3308	0.0228	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT1197_URINARY_TRACT	1	1	0.3536	FALSE	499	1288	110	792	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	NPEPPS--C8orf46	1	101	NPEPPS	2614	chr17:45608921:+	C8orf46	47756	chr8:67422331:+	ONLY_REF_SPLICE	YES	618	81	0.14	0.56	0.0114	1.1519	NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+,C8orf46->chr8:67372238-67430759:+,chromosome_8_open_reading_frame_46	HT1197_URINARY_TRACT	0.14	0.56	1.1633	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	PRKAR2A--SLC25A20	24	8	PRKAR2A	1512	chr3:48884768:-	SLC25A20	28062	chr3:48896064:-	ONLY_REF_SPLICE	YES	13	17	0.71	0.65	0.2737	0.0912	LOCAL_REARRANGEMENT:-:[9090],PRKAR2A->chr3:48782030-48885279:-,protein_kinase_cAMP-dependent_type_II_regulatory_subunit_alpha,SLC25A20->chr3:48894369-48936426:-,solute_carrier_family_25_member_20	HT1197_URINARY_TRACT	0.65	0.71	0.3649	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	CDK11A--NADK	22	12	CDK11A	3732	chr1:1653035:-	NADK	20724	chr1:1696885:-	ONLY_REF_SPLICE	YES	200	49	0.15	0.41	0.2509	0.1369	LOCAL_REARRANGEMENT:-:[26905],CDK11A->Oncogene{Bushman},chr1:1634169-1655766:-,cyclin-dependent_kinase_11A,NADK->NAD_kinase,chr1:1682671-1711896:-	HT1197_URINARY_TRACT	0.15	0.41	0.3878	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	CTA-211A9.5--RBX1	22	12	CTA-211A9.5	2377	chr22:27089799:+	RBX1	25786	chr22:41368480:+	ONLY_REF_SPLICE	YES	11	124	0.76	0.22	0.2509	0.1369	CTA-211A9.5->chr22:27068730-27176170:+,RBX1->Oncogene{Bushman},chr22:41347351-41369313:+,ring-box_1	HT1197_URINARY_TRACT	0.22	0.76	0.3878	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	DLC1--PIWIL2	20	15	DLC1	10024	chr8:13133771:-	PIWIL2	55256	chr8:22210472:+	ONLY_REF_SPLICE	YES	15	2	0.7	0.95	0.2281	0.1711	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,PIWIL2->chr8:22132810-22215076:+,piwi_like_RNA-mediated_gene_silencing_2	HT1197_URINARY_TRACT	0.7	0.95	0.3992	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	PIP4K2B--FBXO47	19	12	PIP4K2B	1861	chr17:36955519:-	FBXO47	26341	chr17:37101389:-	ONLY_REF_SPLICE	YES	52	0	0.37	1	0.2167	0.1369	PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta,FBXO47->F-box_protein_47,chr17:37092685-37123655:-	HT1197_URINARY_TRACT	0.37	1	0.3536	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	YTHDF2--RP11-295P22.2	14	9	YTHDF2	7260	chr1:29070498:+	RP11-295P22.2	12286	chrY:13629735:-	INCL_NON_REF_SPLICE	YES	150	0	0.13	1	0.1597	0.1026	YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+,RP11-295P22.2->chrY:13629403-13629913:-	HT1197_URINARY_TRACT	0.13	1	0.2623	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	RP11-114H23.1--RP11-114H23.2	12	16	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.93	1	0.1369	0.1825	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HT1197_URINARY_TRACT	0.93	1	0.3194	FALSE	81	155	12	160	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	CTA-211A9.5--RBX1	12	15	CTA-211A9.5	3556	chr22:27107971:+	RBX1	25786	chr22:41368480:+	ONLY_REF_SPLICE	YES	5	124	0.84	0.18	0.1369	0.1711	CTA-211A9.5->chr22:27068730-27176170:+,RBX1->Oncogene{Bushman},chr22:41347351-41369313:+,ring-box_1	HT1197_URINARY_TRACT	0.18	0.84	0.308	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	MT-ND6--MT-TE	13	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1483	0.057	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT1197_URINARY_TRACT	1	1	0.2053	FALSE	499	1288	110	792	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	RP11-680G10.1--GSE1	11	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	20	1	0.46	0.1255	0.0684	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HT1197_URINARY_TRACT	0.46	1	0.1939	TRUE	465	1949	224	605	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	FAM222B--B4GALT4	8	17	FAM222B	8446	chr17:27093604:-	B4GALT4	19596	chr3:118955917:-	ONLY_REF_SPLICE	YES	11	41	0.69	0.38	0.0912	0.1939	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,B4GALT4->beta-1,4-galactosyltransferase_4,chr3:118930579-118959950:-	HT1197_URINARY_TRACT	0.38	0.69	0.2851	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	AC104389.28--HBE1	8	13	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	12	0	0.64	1	0.0912	0.1483	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HT1197_URINARY_TRACT	0.64	1	0.2395	TRUE	0	35	0	55	35	FALSE	ACH-000547
HT1197_URINARY_TRACT	AC104389.28--HBE1	8	12	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	12	1	0.62	0.95	0.0912	0.1369	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HT1197_URINARY_TRACT	0.62	0.95	0.2281	TRUE	0	48	0	65	48	FALSE	ACH-000547
HT1197_URINARY_TRACT	C15orf57--CBX3	8	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	15	14	0.52	0.53	0.0912	0.0912	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HT1197_URINARY_TRACT	0.52	0.53	0.1824	TRUE	267	562	48	632	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	DLC1--PIWIL2	10	0	DLC1	9591	chr8:13134204:-	PIWIL2	55256	chr8:22210472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1141	0	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,PIWIL2->chr8:22132810-22215076:+,piwi_like_RNA-mediated_gene_silencing_2	HT1197_URINARY_TRACT	1	1	0.1141	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	7	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.9	0.95	0.0798	0.1255	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HT1197_URINARY_TRACT	0.9	0.95	0.2053	FALSE	515	4851	409	746	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	PBX1--COPA	9	2	PBX1	4894	chr1:164532548:+	COPA	52147	chr1:160310084:-	ONLY_REF_SPLICE	YES	6	249	0.65	0.04	0.1026	0.0228	PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1,COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha	HT1197_URINARY_TRACT	0.04	0.65	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	NRIP1--AF127936.7	9	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.1026	0.0114	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HT1197_URINARY_TRACT	0.91	1	0.114	FALSE	292	1546	117	613	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0912	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HT1197_URINARY_TRACT	1	1	0.0912	FALSE	13	9	0	364	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	PLCG1--TOP1	8	0	PLCG1	1076	chr20:39765675:+	TOP1	35196	chr20:39729849:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0912	0	LOCAL_REARRANGEMENT:+:[12473],PLCG1->chr20:39765600-39811629:+,phospholipase_C_gamma_1,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	HT1197_URINARY_TRACT	1	1	0.0912	TRUE	0	0	0	3	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	AP000525.9--LA16c-60G3.6	7	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	17	0	0.35	1	0.0798	0.0228	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HT1197_URINARY_TRACT	0.35	1	0.1026	TRUE	0	42	0	133	42	FALSE	ACH-000547
HT1197_URINARY_TRACT	XXbac-BPG252P9.9--IFI27	6	6	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	2156	3	0.01	0.8	0.0684	0.0684	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	HT1197_URINARY_TRACT	0.01	0.8	0.1368	TRUE	0	2	0	13	2	TRUE	ACH-000547
HT1197_URINARY_TRACT	RP11-114H23.1--RP11-114H23.2	4	12	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0456	0.1369	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HT1197_URINARY_TRACT	0.89	1	0.1825	FALSE	81	155	12	160	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	DLC1--PIWIL2	3	15	DLC1	10024	chr8:13133771:-	PIWIL2	53990	chr8:22175683:+	ONLY_REF_SPLICE	YES	15	0	0.55	1	0.0342	0.1711	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,PIWIL2->chr8:22132810-22215076:+,piwi_like_RNA-mediated_gene_silencing_2	HT1197_URINARY_TRACT	0.55	1	0.2053	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	PCNX--RAD51B	5	6	PCNX	7996	chr14:71435827:+	RAD51B	73817	chr14:68758601:+	ONLY_REF_SPLICE	YES	57	9	0.16	0.55	0.057	0.0684	PCNX->chr14:71374122-71582099:+,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	HT1197_URINARY_TRACT	0.16	0.55	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	NBAS--AC113608.1	5	5	NBAS	9359	chr2:15674667:-	AC113608.1	64055	chr2:15942214:-	ONLY_REF_SPLICE	YES	27	0	0.27	1	0.057	0.057	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC113608.1->chr2:15941871-15951001:-	HT1197_URINARY_TRACT	0.27	1	0.114	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	CDC42EP2--BSCL2	6	0	CDC42EP2	1137	chr11:65082425:+	BSCL2	10974	chr11:62474796:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0684	0	CDC42EP2->CDC42_effector_protein_2,chr11:65082289-65089900:+,BSCL2->Berardinelli-Seip_congenital_lipodystrophy_2_(seipin),chr11:62457747-62477317:-	HT1197_URINARY_TRACT	1	1	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	3	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0342	0.1369	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HT1197_URINARY_TRACT	0.88	1	0.1711	FALSE	407	2205	196	549	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	FN1--KRT18	3	11	FN1	40497	chr2:216239937:-	KRT18	55537	chr12:53343256:+	INCL_NON_REF_SPLICE	YES	7578	13343	0	0	0.0342	0.1255	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,KRT18->chr12:53342655-53346685:+,keratin_18	HT1197_URINARY_TRACT	0	0	0.1597	TRUE	0	0	0	1	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	MT-ND6--MT-TE	4	7	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0.0798	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT1197_URINARY_TRACT	1	1	0.1254	FALSE	499	1288	110	792	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	MT-ND6--MT-TE	4	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0.0798	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT1197_URINARY_TRACT	1	1	0.1254	FALSE	499	1288	110	792	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	PROSER2-AS1--UPF2	5	3	PROSER2-AS1	3754	chr10:11916667:-	UPF2	19466	chr10:12046726:-	ONLY_REF_SPLICE	YES	0	51	1	0.14	0.057	0.0342	LOCAL_REARRANGEMENT:-:[25322],PROSER2-AS1->PROSER2_antisense_RNA_1,chr10:11891612-11936699:-,UPF2->UPF2_regulator_of_nonsense_transcripts_homolog_(yeast),chr10:11962021-12085169:-	HT1197_URINARY_TRACT	0.14	1	0.0912	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	DLC1--SLC39A14	5	2	DLC1	10024	chr8:13133771:-	SLC39A14	40179	chr8:22262209:+	ONLY_REF_SPLICE	YES	15	92	0.32	0.07	0.057	0.0228	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,SLC39A14->chr8:22224762-22291642:+,solute_carrier_family_39_member_14	HT1197_URINARY_TRACT	0.07	0.32	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	MT-ND6--MT-TE	5	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0.0228	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT1197_URINARY_TRACT	1	1	0.0798	FALSE	499	1288	110	792	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	KRT7--MT-ND4L	4	5	KRT7	5533	chr12:52632512:+	MT-ND4L	17380	chrM:10470:+	INCL_NON_REF_SPLICE	YES	8554	0	0	1	0.0456	0.057	KRT7->chr12:52626304-52645970:+,keratin_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HT1197_URINARY_TRACT	0	1	0.1026	FALSE	0	0	0	2	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	RP11-123O10.4--GRIP1	5	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0.0114	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HT1197_URINARY_TRACT	1	1	0.0684	FALSE	416	2512	207	587	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	C15orf57--CBX3	4	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	16	14	0.33	0.36	0.0456	0.0456	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HT1197_URINARY_TRACT	0.33	0.36	0.0912	TRUE	267	562	48	632	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	ZC3H3--MROH6	3	7	ZC3H3	4593	chr8:144618427:-	MROH6	19460	chr8:144653164:-	ONLY_REF_SPLICE	YES	26	1	0.28	0.91	0.0342	0.0798	LOCAL_REARRANGEMENT:-:[24734],ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,MROH6->chr8:144648357-144655141:-,maestro_heat_like_repeat_family_member_6	HT1197_URINARY_TRACT	0.28	0.91	0.114	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	FAM222B--B4GALT4	3	5	FAM222B	8446	chr17:27093604:-	B4GALT4	24259	chr3:118949091:-	ONLY_REF_SPLICE	YES	11	408	0.42	0.02	0.0342	0.057	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,B4GALT4->beta-1,4-galactosyltransferase_4,chr3:118930579-118959950:-	HT1197_URINARY_TRACT	0.02	0.42	0.0912	TRUE	0	0	0	1	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	KRT8--AHNAK	4	1	KRT8	6339	chr12:53298594:-	AHNAK	30525	chr11:62293493:-	INCL_NON_REF_SPLICE	NO	14230	678	0	0.01	0.0456	0.0114	KRT8->chr12:53290977-53343738:-,keratin_8,AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-	HT1197_URINARY_TRACT	0	0.01	0.057	FALSE	0	0	0	1	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HT1197_URINARY_TRACT	1	1	0.0456	FALSE	13	9	0	364	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	DLC1--PIWIL2	3	3	DLC1	10024	chr8:13133771:-	PIWIL2	57588	chr8:22212862:+	ONLY_REF_SPLICE	YES	15	27	0.29	0.18	0.0342	0.0342	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,PIWIL2->chr8:22132810-22215076:+,piwi_like_RNA-mediated_gene_silencing_2	HT1197_URINARY_TRACT	0.18	0.29	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	RP11-680G10.1--GSE1	2	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	20	1	0.31	0.0228	0.0798	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HT1197_URINARY_TRACT	0.31	1	0.1026	TRUE	458	1351	185	561	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	NRIP1--AF127936.7	3	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	21	0	0.19	1	0.0342	0.0228	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HT1197_URINARY_TRACT	0.19	1	0.057	FALSE	164	806	69	479	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.16	1	0.0342	0.0228	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HT1197_URINARY_TRACT	0.16	1	0.057	FALSE	125	705	46	456	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	AC104389.28--HBE1	3	1	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	4	1	0.5	0.8	0.0342	0.0114	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HT1197_URINARY_TRACT	0.5	0.8	0.0456	TRUE	0	16	0	53	13	FALSE	ACH-000547
HT1197_URINARY_TRACT	FGFR2--COL14A1	3	1	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	35	0	0.1	1	0.0342	0.0114	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	HT1197_URINARY_TRACT	0.1	1	0.0456	TRUE	0	0	0	32	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	LINC00152--AC093616.4	1	9	LINC00152	1278	chr2:87755164:+	AC093616.4	17233	chr2:88000503:+	ONLY_REF_SPLICE	YES	576	0	0.02	1	0.0114	0.1026	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	HT1197_URINARY_TRACT	0.02	1	0.114	FALSE	0	0	0	11	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	FDFT1--MTATP6P1	3	0	FDFT1	3060	chr8:11660368:+	MTATP6P1	17106	chr1:569393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HT1197_URINARY_TRACT	1	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	SLC1A5--MT-ND4L	3	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HT1197_URINARY_TRACT	1	1	0.0342	FALSE	0	0	0	189	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	AC104389.28--HBE1	2	1	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0228	0.0114	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HT1197_URINARY_TRACT	0.43	1	0.0342	TRUE	0	11	0	26	8	FALSE	ACH-000547
HT1197_URINARY_TRACT	ACKR2--HIGD1A	2	1	ACKR2	3259	chr3:42851024:+	HIGD1A	23482	chr3:42827654:-	ONLY_REF_SPLICE	YES	1	730	0.75	0	0.0228	0.0114	LOCAL_INVERSION:+:-:[221],ACKR2->atypical_chemokine_receptor_2,chr3:42846244-42929466:+,HIGD1A->HIG1_hypoxia_inducible_domain_family_member_1A,chr3:42798669-42846023:-	HT1197_URINARY_TRACT	0	0.75	0.0342	FALSE	0	0	0	1	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	CTA-211A9.5--RBX1	1	5	CTA-211A9.5	1221	chr22:27068950:+	RBX1	25786	chr22:41368480:+	ONLY_REF_SPLICE	YES	14	124	0.3	0.05	0.0114	0.057	CTA-211A9.5->chr22:27068730-27176170:+,RBX1->Oncogene{Bushman},chr22:41347351-41369313:+,ring-box_1	HT1197_URINARY_TRACT	0.05	0.3	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	DSCR4--KCNJ6	2	1	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	18	0	0.14	1	0.0228	0.0114	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	HT1197_URINARY_TRACT	0.14	1	0.0342	FALSE	0	24	0	27	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	VRK2--CHMP1A	2	1	VRK2	16257	chr2:58316858:+	CHMP1A	32295	chr16:89713739:-	ONLY_REF_SPLICE	NO	40	385	0.07	0.01	0.0228	0.0114	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1},VRK2->chr2:58134786-58387055:+,vaccinia_related_kinase_2,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HT1197_URINARY_TRACT	0.01	0.07	0.0342	FALSE	0	1	0	2	1	FALSE	ACH-000547
HT1197_URINARY_TRACT	CTD-2410N18.5--AP3B1	2	0	CTD-2410N18.5	1312	chr5:133561451:-	AP3B1	28878	chr5:77396849:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	CTD-2410N18.5->chr5:133502861-133561762:-,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	HT1197_URINARY_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	DNMT1--PPP1R12C	2	0	DNMT1	18956	chr19:10270334:-	PPP1R12C	48570	chr19:55614936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	HT1197_URINARY_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	FIBCD1--WWC1	2	0	FIBCD1	8846	chr9:133780621:-	WWC1	18562	chr5:167812216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	FIBCD1->chr9:133777825-133814673:-,fibrinogen_C_domain_containing_1,WWC1->WW_and_C2_domain_containing_1,chr5:167718656-167899308:+	HT1197_URINARY_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	FNDC3B--ALS2CR12	2	0	FNDC3B	39126	chr3:172098883:+	ALS2CR12	57275	chr2:202173973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,ALS2CR12->amyotrophic_lateral_sclerosis_2_chromosome_region_candidate_12,chr2:202152994-202222121:-	HT1197_URINARY_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	GAS5--NOP56	2	0	GAS5	4026	chr1:173834995:-	NOP56	13613	chr20:2637420:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding),NOP56->NOP56_ribonucleoprotein,chr20:2632791-2639039:+	HT1197_URINARY_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	LRRFIP1--AGAP1	2	0	LRRFIP1	25426	chr2:238668848:+	AGAP1	64329	chr2:236945205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+	HT1197_URINARY_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	PCF11--CHMP1A	2	0	PCF11	1644	chr11:82868673:+	CHMP1A	28491	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	PCF11->PCF11_cleavage_and_polyadenylation_factor_subunit,chr11:82868030-82898493:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HT1197_URINARY_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	SCARB1--UBC	2	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	HT1197_URINARY_TRACT	1	1	0.0228	TRUE	55	66	6	101	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	SRP54--C7orf26	2	0	SRP54	15557	chr14:35488280:+	C7orf26	26754	chr7:6639460:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	SRP54->chr14:35451163-35498773:+,signal_recognition_particle_54kDa,C7orf26->chr7:6629648-6648357:+,chromosome_7_open_reading_frame_26	HT1197_URINARY_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	ANKS1A--RP11-444E17.6	1	2	ANKS1A	11307	chr6:34985836:+	RP11-444E17.6	33095	chr6:44320463:+	ONLY_REF_SPLICE	YES	39	0	0.07	1	0.0114	0.0228	ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+,RP11-444E17.6->chr6:44240931-44346694:+	HT1197_URINARY_TRACT	0.07	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0114	0.0228	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HT1197_URINARY_TRACT	1	1	0.0342	FALSE	9	21	5	22	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	RP11-820L6.1--RP11-166D19.1	1	2	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0114	0.0228	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HT1197_URINARY_TRACT	1	1	0.0342	FALSE	65	26	15	9	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	ABCA4--ARHGAP29	1	1	ABCA4	42775	chr1:94480099:-	ARHGAP29	88613	chr1:94616071:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0114	0.0114	LOCAL_REARRANGEMENT:-:[27856],ABCA4->ATP_binding_cassette_subfamily_A_member_4,chr1:94458393-94586688:-,ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-	HT1197_URINARY_TRACT	0.2	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	ACKR2--HIGD1A	1	1	ACKR2	3259	chr3:42851024:+	HIGD1A	22363	chr3:42835767:-	ONLY_REF_SPLICE	YES	1	7	0.67	0.22	0.0114	0.0114	LOCAL_INVERSION:+:-:[221],ACKR2->atypical_chemokine_receptor_2,chr3:42846244-42929466:+,HIGD1A->HIG1_hypoxia_inducible_domain_family_member_1A,chr3:42798669-42846023:-	HT1197_URINARY_TRACT	0.22	0.67	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000547
HT1197_URINARY_TRACT	CCT2--PCBP2	1	1	CCT2	2011	chr12:69980124:+	PCBP2	25434	chr12:53854799:+	ONLY_REF_SPLICE	NO	717	833	0	0	0.0114	0.0114	CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2	HT1197_URINARY_TRACT	0	0	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	MAP4K4--MRPS9	1	1	MAP4K4	2689	chr2:102315000:+	MRPS9	45008	chr2:105665629:+	ONLY_REF_SPLICE	YES	141	113	0.01	0.02	0.0114	0.0114	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Left_Ventricle=1},MAP4K4->chr2:102313312-102511149:+,mitogen-activated_protein_kinase_kinase_kinase_kinase_4,MRPS9->chr2:105654441-105716418:+,mitochondrial_ribosomal_protein_S9	HT1197_URINARY_TRACT	0.01	0.02	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	RAP1GDS1--IRF2BP2	1	1	RAP1GDS1	9352	chr4:99313231:+	IRF2BP2	27576	chr1:234743598:-	ONLY_REF_SPLICE	NO	10	88	0.17	0.02	0.0114	0.0114	RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	HT1197_URINARY_TRACT	0.02	0.17	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	37	1	0.05	0.0114	0.0114	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HT1197_URINARY_TRACT	0.05	1	0.0228	TRUE	64	13	3	59	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	TINAGL1--IFI6	1	1	TINAGL1	9159	chr1:32051477:+	IFI6	15067	chr1:27995857:-	ONLY_REF_SPLICE	YES	1642	23	0	0.08	0.0114	0.0114	TINAGL1->chr1:32042116-32053288:+,tubulointerstitial_nephritis_antigen_like_1,IFI6->chr1:27992572-27998729:-,interferon_alpha_inducible_protein_6	HT1197_URINARY_TRACT	0	0.08	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	TNFAIP8--HSD17B4	1	1	TNFAIP8	6599	chr5:118691816:+	HSD17B4	19973	chr5:118792010:+	ONLY_REF_SPLICE	YES	201	149	0.01	0.01	0.0114	0.0114	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	HT1197_URINARY_TRACT	0.01	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000547
HT1197_URINARY_TRACT	TYMS--SNX5	1	1	TYMS	4286	chr18:662320:+	SNX5	16350	chr20:17941969:-	ONLY_REF_SPLICE	NO	462	907	0	0	0.0114	0.0114	TYMS->chr18:657604-673578:+,thymidylate_synthetase,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	HT1197_URINARY_TRACT	0	0	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000547
KMRC3_KIDNEY	TIMM23B--LINC00843	56	10	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7862	0.1404	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMRC3_KIDNEY	1	1	0.9266	TRUE	508	994	45	981	0	FALSE	ACH-000313
KMRC3_KIDNEY	MT-TA--MT-TC	32	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4492	0.0281	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMRC3_KIDNEY	1	1	0.4773	FALSE	462	80	0	856	0	FALSE	ACH-000313
KMRC3_KIDNEY	TIMM23--RP11-464F9.1	26	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.365	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KMRC3_KIDNEY	1	1	0.365	TRUE	519	3926	326	965	0	FALSE	ACH-000313
KMRC3_KIDNEY	MIPEPP3--ABHD12	22	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3089	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	KMRC3_KIDNEY	1	1	0.3089	TRUE	64	202	9	44	0	FALSE	ACH-000313
KMRC3_KIDNEY	MT-ND6--MT-TE	11	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.8	1	0.1544	0.1263	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC3_KIDNEY	0.8	1	0.2807	FALSE	499	1288	110	792	0	FALSE	ACH-000313
KMRC3_KIDNEY	MT-ND6--MT-TE	11	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1544	0.014	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC3_KIDNEY	1	1	0.1684	FALSE	499	1288	110	792	0	FALSE	ACH-000313
KMRC3_KIDNEY	GEMIN7--RELB	9	8	GEMIN7	1835	chr19:45583287:+	RELB	14588	chr19:45525311:+	ONLY_REF_SPLICE	YES	34	11	0.33	0.61	0.1263	0.1123	LOCAL_REARRANGEMENT:+:[41001],GEMIN7->chr19:45582453-45594782:+,gem_nuclear_organelle_associated_protein_7,RELB->Oncogene{Bushman},RELB_proto-oncogene,_NF-kB_subunit,chr19:45504688-45541452:+	KMRC3_KIDNEY	0.33	0.61	0.2386	TRUE	0	0	0	1	0	TRUE	ACH-000313
KMRC3_KIDNEY	MT-ND6--MT-TE	10	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1404	0.014	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC3_KIDNEY	1	1	0.1544	FALSE	499	1288	110	792	0	FALSE	ACH-000313
KMRC3_KIDNEY	NRIP1--AF127936.7	10	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.69	1	0.1404	0.014	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMRC3_KIDNEY	0.69	1	0.1544	FALSE	292	1546	117	613	0	FALSE	ACH-000313
KMRC3_KIDNEY	IGFBP7--MT-ND4L	7	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0983	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMRC3_KIDNEY	1	1	0.0983	FALSE	1	0	0	30	0	FALSE	ACH-000313
KMRC3_KIDNEY	COL8A1--CMSS1	5	6	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	456	102	0.02	0.1	0.0702	0.0842	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	KMRC3_KIDNEY	0.02	0.1	0.1544	FALSE	76	19	3	26	0	FALSE	ACH-000313
KMRC3_KIDNEY	RP11-123O10.4--GRIP1	5	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0702	0.0281	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KMRC3_KIDNEY	1	1	0.0983	FALSE	416	2512	207	587	0	FALSE	ACH-000313
KMRC3_KIDNEY	MT-TA--MT-TC	4	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0.014	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMRC3_KIDNEY	1	1	0.0702	FALSE	462	80	0	856	0	FALSE	ACH-000313
KMRC3_KIDNEY	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC3_KIDNEY	1	1	0.0562	FALSE	499	1288	110	792	0	FALSE	ACH-000313
KMRC3_KIDNEY	APP--MT-ND2	3	1	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	1999	2627	0	0	0.0421	0.014	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KMRC3_KIDNEY	0	0	0.0561	FALSE	0	1	0	51	0	FALSE	ACH-000313
KMRC3_KIDNEY	C15orf57--CBX3	3	1	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	38	13	0.1	0.24	0.0421	0.014	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMRC3_KIDNEY	0.1	0.24	0.0561	TRUE	267	562	48	632	0	FALSE	ACH-000313
KMRC3_KIDNEY	C15orf57--CBX3	3	1	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	40	12	0.09	0.25	0.0421	0.014	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMRC3_KIDNEY	0.09	0.25	0.0561	TRUE	267	562	48	632	0	FALSE	ACH-000313
KMRC3_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC3_KIDNEY	1	1	0.0421	FALSE	499	1288	110	792	0	FALSE	ACH-000313
KMRC3_KIDNEY	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMRC3_KIDNEY	1	1	0.0421	FALSE	462	80	0	856	0	FALSE	ACH-000313
KMRC3_KIDNEY	COL8A1--CMSS1	2	1	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	486	102	0.01	0.03	0.0281	0.014	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	KMRC3_KIDNEY	0.01	0.03	0.0421	FALSE	38	10	2	29	0	FALSE	ACH-000313
KMRC3_KIDNEY	TPM1--OBSCN	2	0	TPM1	2200	chr15:63336030:+	OBSCN	23921	chr1:228401142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	GTEx&tcga_normals:1/3694=0.03%,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha),OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF	KMRC3_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000313
KMRC3_KIDNEY	CRIM1--FEZ2	1	3	CRIM1	18863	chr2:36749456:+	FEZ2	38223	chr2:36806008:-	ONLY_REF_SPLICE	YES	1118	152	0	0.03	0.014	0.0421	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	KMRC3_KIDNEY	0	0.03	0.0561	FALSE	0	0	0	2	0	FALSE	ACH-000313
KMRC3_KIDNEY	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	7	4	0.22	0.33	0.014	0.014	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	KMRC3_KIDNEY	0.22	0.33	0.028	FALSE	118	557	29	88	0	FALSE	ACH-000313
KMRC3_KIDNEY	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	27	0	0.07	1	0.014	0.014	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMRC3_KIDNEY	0.07	1	0.028	FALSE	164	806	69	479	0	FALSE	ACH-000313
KMRC3_KIDNEY	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.014	0.014	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KMRC3_KIDNEY	1	1	0.028	FALSE	93	270	15	244	0	FALSE	ACH-000313
KMRC3_KIDNEY	RP11-357C3.3--ARHGEF9	1	1	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	27535	chrX:62898452:-	ONLY_REF_SPLICE	NO	41	14	0.05	0.12	0.014	0.014	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	KMRC3_KIDNEY	0.05	0.12	0.028	TRUE	0	2	0	6	0	FALSE	ACH-000313
KYSE140_OESOPHAGUS	WDR43--TRIM54	149	189	WDR43	1281	chr2:29117789:+	TRIM54	29769	chr2:27527827:+	ONLY_REF_SPLICE	YES	83	5	0.8	0.99	2.0246	2.5681	{Klijn_CCL:Head-Neck=1},WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+,TRIM54->chr2:27505260-27530307:+,tripartite_motif_containing_54	KYSE140_OESOPHAGUS	0.8	0.99	4.5927	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MIER3--CDC20B	145	53	MIER3	13291	chr5:56226491:-	CDC20B	30752	chr5:54429356:-	ONLY_REF_SPLICE	YES	7	0	0.97	1	1.9702	0.7202	{Klijn_CCL:Head-Neck=1},MIER3->MIER_family_member_3,chr5:56215429-56267502:-,CDC20B->cell_division_cycle_20B,chr5:54408799-54469005:-	KYSE140_OESOPHAGUS	0.97	1	2.6904	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	WDR43--TRIM54	112	129	WDR43	1281	chr2:29117789:+	TRIM54	30394	chr2:27528452:+	ONLY_REF_SPLICE	YES	83	21	0.74	0.92	1.5218	1.7528	{Klijn_CCL:Head-Neck=1},WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+,TRIM54->chr2:27505260-27530307:+,tripartite_motif_containing_54	KYSE140_OESOPHAGUS	0.74	0.92	3.2746	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	TIMM23B--LINC00843	94	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2773	0.2853	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KYSE140_OESOPHAGUS	1	1	1.5626	TRUE	508	994	45	981	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	AC069277.2--AC026167.1	69	38	AC069277.2	1468	chr3:6532633:+	AC026167.1	18180	chr3:6400588:+	ONLY_REF_SPLICE	YES	6	0	0.95	1	0.9376	0.5163	AC069277.2->chr3:6532166-6777816:+,AC026167.1->chr3:6190171-6407572:+	KYSE140_OESOPHAGUS	0.95	1	1.4539	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	BOD1--RP11-1145L24.1	71	17	BOD1	3736	chr5:173040134:-	RP11-1145L24.1	9993	chr8:73793946:-	INCL_NON_REF_SPLICE	YES	67	0	0.57	1	0.9647	0.231	BOD1->biorientation_of_chromosomes_in_cell_division_1,chr5:173034517-173043663:-,RP11-1145L24.1->chr8:73787094-73793975:-	KYSE140_OESOPHAGUS	0.57	1	1.1957	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	TIMM23--RP11-464F9.1	51	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	238	6	0.18	0.9	0.693	0.0272	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KYSE140_OESOPHAGUS	0.18	0.9	0.7202	TRUE	519	3926	326	965	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	3	146	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	48	1	0.76	0.99	0.0408	1.9838	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	0.76	0.99	2.0246	FALSE	344	827	44	306	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	3	145	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	32	0	0.82	1	0.0408	1.9702	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	0.82	1	2.011	FALSE	344	826	44	306	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	4	141	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	12	0	0.92	1	0.0544	1.9159	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	0.92	1	1.9703	FALSE	344	826	44	306	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	3	144	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	21	0	0.88	1	0.0408	1.9567	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	0.88	1	1.9975	FALSE	344	826	44	306	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	TESK2--PRDX1	35	16	TESK2	1349	chr1:45956524:-	PRDX1	18885	chr1:45984726:-	ONLY_REF_SPLICE	YES	6	47	0.89	0.52	0.4756	0.2174	LOCAL_REARRANGEMENT:-:[19836],TESK2->chr1:45809555-45956872:-,testis-specific_kinase_2,PRDX1->Oncogene{Bushman},chr1:45976708-45988719:-,peroxiredoxin_1	KYSE140_OESOPHAGUS	0.52	0.89	0.693	TRUE	0	1	0	1	1	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	3	143	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	19	0	0.88	1	0.0408	1.9431	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	0.88	1	1.9839	FALSE	344	826	44	306	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	AC069277.2--AC026167.1	28	37	AC069277.2	1464	chr3:6532629:+	AC026167.1	18180	chr3:6400588:+	ONLY_REF_SPLICE	YES	5	0	0.93	1	0.3805	0.5028	AC069277.2->chr3:6532166-6777816:+,AC026167.1->chr3:6190171-6407572:+	KYSE140_OESOPHAGUS	0.93	1	0.8833	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	RP11-1145L24.1--CTB-33O18.1	35	4	RP11-1145L24.1	1246	chr8:73793730:-	CTB-33O18.1	7659	chr5:172999884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4756	0.0544	RP11-1145L24.1->chr8:73787094-73793975:-,CTB-33O18.1->chr5:172989481-173000202:+	KYSE140_OESOPHAGUS	1	1	0.53	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	AC069277.2--AC026167.1	31	6	AC069277.2	1194	chr3:6532359:+	AC026167.1	18180	chr3:6400588:+	ONLY_REF_SPLICE	YES	2	0	0.95	1	0.4212	0.0815	AC069277.2->chr3:6532166-6777816:+,AC026167.1->chr3:6190171-6407572:+	KYSE140_OESOPHAGUS	0.95	1	0.5027	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	21	41	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	14123	0	0	1	0.2853	0.5571	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	0	1	0.8424	FALSE	328	800	43	304	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	HCG18--ERP29	18	47	HCG18	3356	chr6:30282046:-	ERP29	23057	chr12:112451258:+	INCL_NON_REF_SPLICE	YES	20	0	0.76	1	0.2446	0.6386	HCG18->HLA_complex_group_18_(non-protein_coding),chr6:30255174-30294927:-,ERP29->chr12:112451120-112461255:+,endoplasmic_reticulum_protein_29	KYSE140_OESOPHAGUS	0.76	1	0.8832	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	HCG18--ERP29	22	28	HCG18	2142	chr6:30293786:-	ERP29	23057	chr12:112451258:+	INCL_NON_REF_SPLICE	YES	18	0	0.74	1	0.2989	0.3805	HCG18->HLA_complex_group_18_(non-protein_coding),chr6:30255174-30294927:-,ERP29->chr12:112451120-112461255:+,endoplasmic_reticulum_protein_29	KYSE140_OESOPHAGUS	0.74	1	0.6794	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	3	104	MT-ND4	1466	chrM:11225:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	704	0	0.13	1	0.0408	1.4131	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	0.13	1	1.4539	FALSE	344	827	44	306	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	3	104	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	87	0	0.55	1	0.0408	1.4131	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	0.55	1	1.4539	FALSE	344	827	44	306	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	3	97	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	110	0	0.48	1	0.0408	1.318	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	0.48	1	1.3588	FALSE	344	827	44	306	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	PVT1--KB-1410C5.2	21	12	PVT1	1202	chr8:128806980:+	KB-1410C5.2	28973	chr8:102274610:-	ONLY_REF_SPLICE	YES	32	0	0.51	1	0.2853	0.1631	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,KB-1410C5.2->chr8:102273769-102275131:-	KYSE140_OESOPHAGUS	0.51	1	0.4484	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND6--MT-TE	23	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3125	0.0408	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE140_OESOPHAGUS	1	1	0.3533	FALSE	499	1288	110	792	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-TA--MT-TC	23	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3125	0.0408	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE140_OESOPHAGUS	1	1	0.3533	FALSE	462	80	0	856	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	HCG18--ERP29	16	10	HCG18	1797	chr6:30294131:-	ERP29	23057	chr12:112451258:+	INCL_NON_REF_SPLICE	YES	15	0	0.63	1	0.2174	0.1359	HCG18->HLA_complex_group_18_(non-protein_coding),chr6:30255174-30294927:-,ERP29->chr12:112451120-112461255:+,endoplasmic_reticulum_protein_29	KYSE140_OESOPHAGUS	0.63	1	0.3533	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MT-ATP6--MT-CO1	18	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	15761	35537	0	0	0.2446	0.0272	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE140_OESOPHAGUS	0	0	0.2718	FALSE	183	104	9	328	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	9	38	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	29	0	0.62	1	0.1223	0.5163	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	0.62	1	0.6386	FALSE	344	826	44	306	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	BOD1--RP11-1145L24.1	13	18	BOD1	3736	chr5:173040134:-	RP11-1145L24.1	9989	chr8:73793950:-	INCL_NON_REF_SPLICE	YES	67	0	0.32	1	0.1766	0.2446	BOD1->biorientation_of_chromosomes_in_cell_division_1,chr5:173034517-173043663:-,RP11-1145L24.1->chr8:73787094-73793975:-	KYSE140_OESOPHAGUS	0.32	1	0.4212	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MB21D2--ATP13A4	16	6	MB21D2	1532	chr3:192635419:-	ATP13A4	42653	chr3:193125182:-	ONLY_REF_SPLICE	YES	21	0	0.51	1	0.2174	0.0815	MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,ATP13A4->ATPase_13A4,chr3:193119866-193310900:-	KYSE140_OESOPHAGUS	0.51	1	0.2989	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	3	55	MT-ND4	1201	chrM:10960:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	NO	40	0	0.59	1	0.0408	0.7473	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	0.59	1	0.7881	FALSE	344	826	44	306	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND6--MT-TE	11	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1495	0.1495	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE140_OESOPHAGUS	1	1	0.299	FALSE	499	1288	110	792	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ATP6--MT-CO1	13	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	13235	35783	0	0	0.1766	0.0136	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE140_OESOPHAGUS	0	0	0.1902	FALSE	183	104	9	328	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	3	41	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0408	0.5571	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	0.98	1	0.5979	FALSE	344	821	44	306	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	13	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1766	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	1	1	0.1766	FALSE	230	198	14	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	13	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1766	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	1	1	0.1766	FALSE	230	193	14	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	3	40	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1229	0	0.03	1	0.0408	0.5435	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	0.03	1	0.5843	FALSE	344	827	44	306	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	12	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	4	0	0.79	1	0.1631	0.0408	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KYSE140_OESOPHAGUS	0.79	1	0.2039	FALSE	33	240	4	98	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	CERK--RP11-513G11.4	12	1	CERK	4535	chr22:47115983:-	RP11-513G11.4	23961	chr3:193922755:-	ONLY_REF_SPLICE	YES	57	0	0.19	1	0.1631	0.0136	CERK->ceramide_kinase,chr22:47080308-47134158:-,RP11-513G11.4->chr3:193920805-193967942:-	KYSE140_OESOPHAGUS	0.19	1	0.1767	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	HSPBP1--GRK5	11	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1495	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KYSE140_OESOPHAGUS	1	1	0.1495	TRUE	1	39	0	134	39	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ATP6--MT-CO1	11	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1495	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE140_OESOPHAGUS	1	1	0.1495	FALSE	183	104	9	328	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	10	4	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	20496	0	0	1	0.1359	0.0544	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0	1	0.1903	FALSE	231	217	16	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	RP11-680G10.1--GSE1	9	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.58	0.1223	0.0679	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE140_OESOPHAGUS	0.58	1	0.1902	TRUE	458	1351	185	561	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	3	24	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	45	0	0.38	1	0.0408	0.3261	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	0.38	1	0.3669	FALSE	344	826	44	306	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	6	12	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	35	0	0.34	1	0.0815	0.1631	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	0.34	1	0.2446	FALSE	344	826	44	306	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	6	12	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	85	0	0.17	1	0.0815	0.1631	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	0.17	1	0.2446	FALSE	344	827	44	306	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	HCG18--ERP29	4	19	HCG18	2000	chr6:30293928:-	ERP29	23057	chr12:112451258:+	INCL_NON_REF_SPLICE	YES	20	0	0.53	1	0.0544	0.2582	HCG18->HLA_complex_group_18_(non-protein_coding),chr6:30255174-30294927:-,ERP29->chr12:112451120-112461255:+,endoplasmic_reticulum_protein_29	KYSE140_OESOPHAGUS	0.53	1	0.3126	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MKL1--CLDN1	7	7	MKL1	1225	chr22:41032482:-	CLDN1	24936	chr3:190030825:-	ONLY_REF_SPLICE	YES	38	4	0.27	0.78	0.0951	0.0951	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,CLDN1->chr3:190023490-190040264:-,claudin_1	KYSE140_OESOPHAGUS	0.27	0.78	0.1902	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	PUS7L--DAPK1	8	2	PUS7L	5811	chr12:44139849:-	DAPK1	19549	chr9:90121735:+	ONLY_REF_SPLICE	YES	18	48	0.36	0.17	0.1087	0.0272	PUS7L->chr12:44122410-44152620:-,pseudouridylate_synthase_7_like,DAPK1->Oncogene{Bushman},chr9:90112143-90323548:+,death_associated_protein_kinase_1	KYSE140_OESOPHAGUS	0.17	0.36	0.1359	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	PVT1--ZNF706	7	6	PVT1	1202	chr8:128806980:+	ZNF706	32902	chr8:102213971:-	ONLY_REF_SPLICE	YES	32	411	0.29	0.03	0.0951	0.0815	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706	KYSE140_OESOPHAGUS	0.03	0.29	0.1766	TRUE	0	0	0	1	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	XPNPEP3--EP300	7	4	XPNPEP3	6403	chr22:41266143:+	EP300	56776	chr22:41562603:+	ONLY_REF_SPLICE	YES	32	70	0.26	0.14	0.0951	0.0544	XPNPEP3->X-prolyl_aminopeptidase_3,_mitochondrial,chr22:41253081-41363838:+,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	KYSE140_OESOPHAGUS	0.14	0.26	0.1495	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MIER3--CDC20B	1	27	MIER3	13291	chr5:56226491:-	CDC20B	31869	chr5:54424445:-	ONLY_REF_SPLICE	NO	7	24	0.8	0.54	0.0136	0.3669	{Klijn_CCL:Head-Neck=1},MIER3->MIER_family_member_3,chr5:56215429-56267502:-,CDC20B->cell_division_cycle_20B,chr5:54408799-54469005:-	KYSE140_OESOPHAGUS	0.54	0.8	0.3805	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	AC069277.2--AC026167.1	2	22	AC069277.2	1464	chr3:6532629:+	AC026167.1	19227	chr3:6407416:+	ONLY_REF_SPLICE	YES	5	1	0.83	0.96	0.0272	0.2989	AC069277.2->chr3:6532166-6777816:+,AC026167.1->chr3:6190171-6407572:+	KYSE140_OESOPHAGUS	0.83	0.96	0.3261	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	AC108142.1--RP11-665C14.2	7	2	AC108142.1	7418	chr4:183002909:-	RP11-665C14.2	19713	chr4:182182721:-	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.0951	0.0272	AC108142.1->chr4:182795591-183066402:-,RP11-665C14.2->chr4:182182314-182186182:-	KYSE140_OESOPHAGUS	0.75	1	0.1223	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	FSTL4--CPQ	7	2	FSTL4	3474	chr5:132919235:-	CPQ	45683	chr8:98155248:+	INCL_NON_REF_SPLICE	YES	11	0	0.45	1	0.0951	0.0272	FSTL4->chr5:132532147-132948255:-,follistatin_like_4,CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+	KYSE140_OESOPHAGUS	0.45	1	0.1223	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	6	6	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2862	51	0	0.19	0.0815	0.0815	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0	0.19	0.163	FALSE	216	209	16	281	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	6	6	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	18115	0	0	1	0.0815	0.0815	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0	1	0.163	FALSE	231	217	16	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	BOD1--RP11-1145L24.1	3	17	BOD1	3740	chr5:173040130:-	RP11-1145L24.1	9993	chr8:73793946:-	INCL_NON_REF_SPLICE	YES	67	0	0.23	1	0.0408	0.231	BOD1->biorientation_of_chromosomes_in_cell_division_1,chr5:173034517-173043663:-,RP11-1145L24.1->chr8:73787094-73793975:-	KYSE140_OESOPHAGUS	0.23	1	0.2718	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	7	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0951	0.0136	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE140_OESOPHAGUS	0.89	1	0.1087	FALSE	515	4851	409	746	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-CO2--MT-ND2	7	0	MT-CO2	1320	chrM:7905:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0951	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KYSE140_OESOPHAGUS	1	1	0.0951	FALSE	105	46	5	21	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	5	8	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18236	0	0	1	0.0679	0.1087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0	1	0.1766	FALSE	231	217	16	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND6--MT-TE	3	16	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0.2174	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE140_OESOPHAGUS	1	1	0.2582	FALSE	499	1288	110	792	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	RP11-680G10.1--GSE1	6	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	28	1	0.26	0.0815	0.0544	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE140_OESOPHAGUS	0.26	1	0.1359	TRUE	465	1949	224	605	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ATP6--MT-CO1	6	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4133	36117	0	0	0.0815	0.0408	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE140_OESOPHAGUS	0	0	0.1223	FALSE	183	104	9	328	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND6--MT-TE	6	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0.0408	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE140_OESOPHAGUS	1	1	0.1223	FALSE	499	1288	110	792	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0.0408	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE140_OESOPHAGUS	1	1	0.1223	FALSE	462	80	0	856	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	5	6	MT-ND4	2283	chrM:12042:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	33	51	0.25	0.18	0.0679	0.0815	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0.18	0.25	0.1494	FALSE	213	207	15	279	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	PHF21B--ATP13A4-AS1	5	6	PHF21B	2455	chr22:45404426:-	ATP13A4-AS1	27493	chr3:193272559:+	ONLY_REF_SPLICE	YES	4	0	0.73	1	0.0679	0.0815	PHF21B->PHD_finger_protein_21B,chr22:45277042-45405880:-,ATP13A4-AS1->ATP13A4_antisense_RNA_1,chr3:193271002-193272877:+	KYSE140_OESOPHAGUS	0.73	1	0.1494	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	RALGAPA1--G2E3	6	2	RALGAPA1	41684	chr14:36121011:-	G2E3	66428	chr14:31050282:+	ONLY_REF_SPLICE	YES	36	48	0.18	0.14	0.0815	0.0272	RALGAPA1->Ral_GTPase_activating_protein_catalytic_alpha_subunit_1,chr14:36007558-36278510:-,G2E3->G2/M-phase_specific_E3_ubiquitin_protein_ligase,chr14:31028329-31089269:+	KYSE140_OESOPHAGUS	0.14	0.18	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	TNRC6B--ARHGAP8	4	9	TNRC6B	1182	chr22:40441002:+	ARHGAP8	49703	chr22:45121124:+	ONLY_REF_SPLICE	YES	5	16	0.72	0.45	0.0544	0.1223	TNRC6B->chr22:40440821-40731812:+,trinucleotide_repeat_containing_6B,ARHGAP8->Rho_GTPase_activating_protein_8,chr22:45098355-45258665:+	KYSE140_OESOPHAGUS	0.45	0.72	0.1767	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	DOCK1--PPP1R13B	6	0	DOCK1	57420	chr10:129249877:+	PPP1R13B	64170	chr14:104263855:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,PPP1R13B->chr14:104200089-104313927:-,protein_phosphatase_1_regulatory_subunit_13B	KYSE140_OESOPHAGUS	1	1	0.0815	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	6	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	1	1	0.0815	FALSE	344	821	44	306	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	BOD1--CTB-33O18.1	2	15	BOD1	3736	chr5:173040134:-	CTB-33O18.1	12031	chr5:172999884:+	ONLY_REF_SPLICE	YES	67	0	0.2	1	0.0272	0.2038	LOCAL_INVERSION:-:+:[34315],BOD1->biorientation_of_chromosomes_in_cell_division_1,chr5:173034517-173043663:-,CTB-33O18.1->chr5:172989481-173000202:+	KYSE140_OESOPHAGUS	0.2	1	0.231	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MB21D2--ATP13A4	4	7	MB21D2	1532	chr3:192635419:-	ATP13A4	41564	chr3:193128859:-	ONLY_REF_SPLICE	YES	21	0	0.34	1	0.0544	0.0951	MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,ATP13A4->ATPase_13A4,chr3:193119866-193310900:-	KYSE140_OESOPHAGUS	0.34	1	0.1495	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MT-ATP6--MT-CO1	5	2	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	15631	32951	0	0	0.0679	0.0272	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE140_OESOPHAGUS	0	0	0.0951	FALSE	183	104	9	328	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	PHF21B--ATP13A4-AS1	4	6	PHF21B	8156	chr22:45362895:-	ATP13A4-AS1	27493	chr3:193272559:+	ONLY_REF_SPLICE	YES	5	0	0.67	1	0.0544	0.0815	PHF21B->PHD_finger_protein_21B,chr22:45277042-45405880:-,ATP13A4-AS1->ATP13A4_antisense_RNA_1,chr3:193271002-193272877:+	KYSE140_OESOPHAGUS	0.67	1	0.1359	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	4	5	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18093	0	0	1	0.0544	0.0679	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0	1	0.1223	FALSE	231	217	16	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	4	5	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	8516	545	0	0.02	0.0544	0.0679	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0	0.02	0.1223	FALSE	231	215	16	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ATP6--MT-CO1	5	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE140_OESOPHAGUS	1	1	0.0679	FALSE	183	104	9	328	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ATP6--MT-CO1	5	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE140_OESOPHAGUS	1	1	0.0679	FALSE	183	104	9	328	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ATP6--MT-CO1	5	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE140_OESOPHAGUS	1	1	0.0679	FALSE	183	104	9	328	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-CO2--MT-ND2	5	0	MT-CO2	1240	chrM:7825:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KYSE140_OESOPHAGUS	1	1	0.0679	FALSE	105	46	5	21	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	4	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19496	0	0	1	0.0544	0.0544	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0	1	0.1088	FALSE	231	217	16	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	4	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17607	51	0	0.14	0.0544	0.0544	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0	0.14	0.1088	FALSE	231	217	16	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	4	4	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	20219	0	0	1	0.0544	0.0544	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0	1	0.1088	FALSE	231	217	16	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE140_OESOPHAGUS	1	1	0.0679	FALSE	499	1288	110	792	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ND4L	4	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0.0408	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE140_OESOPHAGUS	1	1	0.0952	FALSE	344	821	44	306	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	3	6	MT-ND4	1833	chrM:11592:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	17545	0	0	1	0.0408	0.0815	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0	1	0.1223	FALSE	231	217	16	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	3	6	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	18242	0	0	1	0.0408	0.0815	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0	1	0.1223	FALSE	231	217	16	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ATP6--MT-CO1	3	5	MT-ATP6	1568	chrM:9094:+	MT-CO1	5184	chrM:6406:+	INCL_NON_REF_SPLICE	YES	1814	32364	0	0	0.0408	0.0679	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE140_OESOPHAGUS	0	0	0.1087	FALSE	183	104	9	328	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-CO2--MT-ND2	4	1	MT-CO2	1493	chrM:8078:+	MT-ND2	5517	chrM:5302:+	INCL_NON_REF_SPLICE	YES	11335	6805	0	0	0.0544	0.0136	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KYSE140_OESOPHAGUS	0	0	0.068	FALSE	105	46	5	21	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	3	5	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16917	51	0	0.14	0.0408	0.0679	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0	0.14	0.1087	FALSE	231	217	16	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	3	5	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	18409	8	0	0.5	0.0408	0.0679	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0	0.5	0.1087	FALSE	231	217	16	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MTND4P12--MT-CO1	4	1	MTND4P12	1217	chr5:134263510:-	MT-CO1	5691	chrM:6217:+	INCL_NON_REF_SPLICE	YES	1	27289	0.83	0	0.0544	0.0136	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE140_OESOPHAGUS	0	0.83	0.068	FALSE	10	0	0	6	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	PVT1--KB-1410C5.2	1	13	PVT1	2520	chr8:128808317:+	KB-1410C5.2	28973	chr8:102274610:-	ONLY_REF_SPLICE	YES	32	0	0.3	1	0.0136	0.1766	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,KB-1410C5.2->chr8:102273769-102275131:-	KYSE140_OESOPHAGUS	0.3	1	0.1902	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0544	0.0136	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE140_OESOPHAGUS	0.83	1	0.068	FALSE	407	2205	196	549	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	TNRC6B--ARHGAP8	4	1	TNRC6B	1182	chr22:40441002:+	ARHGAP8	59235	chr22:45182337:+	ONLY_REF_SPLICE	YES	5	5	0.5	0.5	0.0544	0.0136	TNRC6B->chr22:40440821-40731812:+,trinucleotide_repeat_containing_6B,ARHGAP8->Rho_GTPase_activating_protein_8,chr22:45098355-45258665:+	KYSE140_OESOPHAGUS	0.5	0.5	0.068	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	ZC3H7B--EFCAB6	4	1	ZC3H7B	6962	chr22:41728231:+	EFCAB6	34081	chr22:44178205:-	ONLY_REF_SPLICE	YES	66	3	0.07	0.62	0.0544	0.0136	ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,EFCAB6->EF-hand_calcium_binding_domain_6,chr22:43924624-44208217:-	KYSE140_OESOPHAGUS	0.07	0.62	0.068	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	3	4	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	19501	0	0	1	0.0408	0.0544	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0	1	0.0952	FALSE	231	217	16	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	3	4	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	18252	1618	0	0	0.0408	0.0544	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0	0	0.0952	FALSE	231	217	16	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	3	4	MT-ND4	1566	chrM:11325:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	20776	2	0	0.78	0.0408	0.0544	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0	0.78	0.0952	FALSE	231	217	16	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND6--MT-TE	3	4	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0.0544	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE140_OESOPHAGUS	1	1	0.0952	FALSE	499	1288	110	792	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	XPNPEP3--EP300	3	4	XPNPEP3	5379	chr22:41265119:+	EP300	56776	chr22:41562603:+	ONLY_REF_SPLICE	YES	27	70	0.21	0.09	0.0408	0.0544	XPNPEP3->X-prolyl_aminopeptidase_3,_mitochondrial,chr22:41253081-41363838:+,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	KYSE140_OESOPHAGUS	0.09	0.21	0.0952	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MT-ATP6--MT-CO1	3	2	MT-ATP6	1139	chrM:8665:+	MT-CO1	5217	chrM:6439:+	INCL_NON_REF_SPLICE	YES	14344	32794	0	0	0.0408	0.0272	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE140_OESOPHAGUS	0	0	0.068	FALSE	183	104	9	328	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	3	2	MT-ND4	1285	chrM:11044:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	17464	0	0	1	0.0408	0.0272	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	0	1	0.068	FALSE	231	205	14	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	PHF21B--ATP13A4-AS1	2	6	PHF21B	6999	chr22:45364875:-	ATP13A4-AS1	27493	chr3:193272559:+	ONLY_REF_SPLICE	YES	5	0	0.62	1	0.0272	0.0815	PHF21B->PHD_finger_protein_21B,chr22:45277042-45405880:-,ATP13A4-AS1->ATP13A4_antisense_RNA_1,chr3:193271002-193272877:+	KYSE140_OESOPHAGUS	0.62	1	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0408	0.0272	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE140_OESOPHAGUS	0.83	1	0.068	FALSE	192	492	57	212	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	AC069277.2--AC026167.1	2	5	AC069277.2	1194	chr3:6532359:+	AC026167.1	19227	chr3:6407416:+	ONLY_REF_SPLICE	YES	2	1	0.78	0.88	0.0272	0.0679	AC069277.2->chr3:6532166-6777816:+,AC026167.1->chr3:6190171-6407572:+	KYSE140_OESOPHAGUS	0.78	0.88	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	CASC9--RP11-300E4.2	3	1	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	21	0	0.16	1	0.0408	0.0136	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	KYSE140_OESOPHAGUS	0.16	1	0.0544	TRUE	0	23	0	19	23	TRUE	ACH-000823
KYSE140_OESOPHAGUS	CCAT1--CASC8	3	1	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	50	0	0.07	1	0.0408	0.0136	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	KYSE140_OESOPHAGUS	0.07	1	0.0544	TRUE	0	7	0	14	6	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MT-CO1--KRT6A	3	1	MT-CO1	1591	chrM:6494:+	KRT6A	5561	chr12:52887023:-	INCL_NON_REF_SPLICE	YES	31437	0	0	1	0.0408	0.0136	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	KYSE140_OESOPHAGUS	0	1	0.0544	FALSE	7	19	2	8	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MTAP--CDKN2B-AS1	2	5	MTAP	12211	chr9:21859424:+	CDKN2B-AS1	36403	chr9:22077678:+	ONLY_REF_SPLICE	YES	257	0	0.03	1	0.0272	0.0679	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	KYSE140_OESOPHAGUS	0.03	1	0.0951	FALSE	0	1	1	2	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MTMR4--MRPS23	3	1	MTMR4	3849	chr17:56591724:-	MRPS23	24005	chr17:55926771:-	ONLY_REF_SPLICE	YES	6	13	0.4	0.24	0.0408	0.0136	MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4,MRPS23->chr17:55916842-55927417:-,mitochondrial_ribosomal_protein_S23	KYSE140_OESOPHAGUS	0.24	0.4	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MT-CO2--MT-ND2	3	0	MT-CO2	1301	chrM:7886:+	MT-ND2	5531	chrM:5316:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KYSE140_OESOPHAGUS	1	1	0.0408	FALSE	105	46	5	21	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	1	1	0.0408	FALSE	231	204	14	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND4--MT-ATP8	3	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE140_OESOPHAGUS	1	1	0.0408	FALSE	231	204	14	283	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE140_OESOPHAGUS	1	1	0.0408	FALSE	499	1288	110	792	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE140_OESOPHAGUS	1	1	0.0408	FALSE	292	1546	117	613	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	RP11-108K3.1--GLDN	3	0	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	KYSE140_OESOPHAGUS	1	1	0.0408	FALSE	0	30	1	55	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	BOD1--CTB-33O18.1	2	2	BOD1	1461	chr5:173043203:-	CTB-33O18.1	12031	chr5:172999884:+	ONLY_REF_SPLICE	YES	56	0	0.07	1	0.0272	0.0272	LOCAL_INVERSION:-:+:[34315],BOD1->biorientation_of_chromosomes_in_cell_division_1,chr5:173034517-173043663:-,CTB-33O18.1->chr5:172989481-173000202:+	KYSE140_OESOPHAGUS	0.07	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	PVT1--ZNF706	1	6	PVT1	2457	chr8:128808254:+	ZNF706	32902	chr8:102213971:-	ONLY_REF_SPLICE	YES	35	411	0.17	0.02	0.0136	0.0815	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706	KYSE140_OESOPHAGUS	0.02	0.17	0.0951	TRUE	0	0	0	1	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	DTNB--NBAS	2	1	DTNB	15974	chr2:25754342:-	NBAS	50097	chr2:15629146:-	ONLY_REF_SPLICE	YES	23	11	0.12	0.21	0.0272	0.0136	DTNB->chr2:25600067-25896503:-,dystrobrevin_beta,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence	KYSE140_OESOPHAGUS	0.12	0.21	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	PUS7L--DAPK1	2	1	PUS7L	5811	chr12:44139849:-	DAPK1	20732	chr9:90219869:+	ONLY_REF_SPLICE	NO	18	39	0.14	0.07	0.0272	0.0136	PUS7L->chr12:44122410-44152620:-,pseudouridylate_synthase_7_like,DAPK1->Oncogene{Bushman},chr9:90112143-90323548:+,death_associated_protein_kinase_1	KYSE140_OESOPHAGUS	0.07	0.14	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0272	0.0136	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE140_OESOPHAGUS	0.75	1	0.0408	FALSE	467	2173	244	435	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	AC002066.1--AC073130.1	2	0	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	KYSE140_OESOPHAGUS	1	1	0.0272	FALSE	0	3	0	33	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	1	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0136	0.0544	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KYSE140_OESOPHAGUS	0.56	1	0.068	FALSE	20	187	4	79	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	EIF2A--TM4SF1-AS1	2	0	EIF2A	11979	chr3:150290316:+	TM4SF1-AS1	21981	chr3:149104155:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	EIF2A->chr3:150264465-150302029:+,eukaryotic_translation_initiation_factor_2A,TM4SF1-AS1->TM4SF1_antisense_RNA_1,chr3:149095565-149104370:+	KYSE140_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	NUPL2--DAP3	2	0	NUPL2	3987	chr7:23226765:+	DAP3	30023	chr1:155708400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	KYSE140_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	2	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	RP11-545D19.1--DMD	2	0	RP11-545D19.1	1357	chrX:34433298:-	DMD	13428	chrX:33038317:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	RP11-545D19.1->chrX:34224842-34433654:-,DMD->chrX:31115794-33357558:-,dystrophin	KYSE140_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KYSE140_OESOPHAGUS	1	1	0.0272	TRUE	5	8	0	33	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	TRRAP--ABHD10	2	0	TRRAP	60033	chr7:98586589:+	ABHD10	77519	chr3:111705761:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	TRRAP->chr7:98475556-98610866:+,transformation/transcription_domain_associated_protein,ABHD10->abhydrolase_domain_containing_10,chr3:111697857-111712210:+	KYSE140_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	ZFAND3--TBC1D22B	2	0	ZFAND3	1518	chr6:37787792:+	TBC1D22B	19593	chr6:37247080:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3,TBC1D22B->TBC1_domain_family_member_22B,chr6:37225548-37300746:+	KYSE140_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MB21D2--ATP13A4	1	3	MB21D2	1532	chr3:192635419:-	ATP13A4	44877	chr3:193120653:-	ONLY_REF_SPLICE	YES	21	0	0.16	1	0.0136	0.0408	MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,ATP13A4->ATPase_13A4,chr3:193119866-193310900:-	KYSE140_OESOPHAGUS	0.16	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MTAP--CDKN2B-AS1	1	3	MTAP	9899	chr9:21854869:+	CDKN2B-AS1	37616	chr9:22092307:+	ONLY_REF_SPLICE	YES	200	0	0.02	1	0.0136	0.0408	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	KYSE140_OESOPHAGUS	0.02	1	0.0544	FALSE	0	1	0	2	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	RALGAPA1--G2E3	1	3	RALGAPA1	41684	chr14:36121011:-	G2E3	66216	chr14:31050070:+	ONLY_REF_SPLICE	YES	36	51	0.1	0.07	0.0136	0.0408	RALGAPA1->Ral_GTPase_activating_protein_catalytic_alpha_subunit_1,chr14:36007558-36278510:-,G2E3->G2/M-phase_specific_E3_ubiquitin_protein_ligase,chr14:31028329-31089269:+	KYSE140_OESOPHAGUS	0.07	0.1	0.0544	TRUE	0	0	0	1	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MTAP--CDKN2B-AS1	1	2	MTAP	9899	chr9:21854869:+	CDKN2B-AS1	38778	chr9:22096371:+	ONLY_REF_SPLICE	YES	200	0	0.01	1	0.0136	0.0272	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	KYSE140_OESOPHAGUS	0.01	1	0.0408	FALSE	0	0	0	3	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0136	0.0272	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE140_OESOPHAGUS	0.75	1	0.0408	FALSE	275	511	55	178	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	KIAA0391--FAM177A1	1	1	KIAA0391	8895	chr14:35739802:+	FAM177A1	26669	chr14:35522484:+	ONLY_REF_SPLICE	YES	212	293	0.01	0.01	0.0136	0.0136	LOCAL_INVERSION:+,chr14:+:[8716],KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+,FAM177A1->chr14:35514113-35582336:+,family_with_sequence_similarity_177_member_A1	KYSE140_OESOPHAGUS	0.01	0.01	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MANBA--TIFA	1	1	MANBA	9780	chr4:103610731:-	TIFA	30438	chr4:113199590:-	ONLY_REF_SPLICE	YES	11	16	0.15	0.11	0.0136	0.0136	MANBA->chr4:103552660-103682151:-,mannosidase_beta,TIFA->TRAF_interacting_protein_with_forkhead_associated_domain,chr4:113195698-113207059:-	KYSE140_OESOPHAGUS	0.11	0.15	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000823
KYSE140_OESOPHAGUS	MTAP--CDKN2B-AS1	1	1	MTAP	9899	chr9:21854869:+	CDKN2B-AS1	39664	chr9:22097257:+	ONLY_REF_SPLICE	YES	200	0	0.01	1	0.0136	0.0136	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	KYSE140_OESOPHAGUS	0.01	1	0.0272	FALSE	0	0	0	3	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	MTAP--CDKN2B-AS1	1	1	MTAP	9899	chr9:21854869:+	CDKN2B-AS1	44105	chr9:22120199:+	ONLY_REF_SPLICE	YES	200	6	0.01	0.25	0.0136	0.0136	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	KYSE140_OESOPHAGUS	0.01	0.25	0.0272	FALSE	0	1	1	2	0	FALSE	ACH-000823
KYSE140_OESOPHAGUS	ZDHHC17--ANKLE2	1	1	ZDHHC17	1742	chr12:77158109:+	ANKLE2	39612	chr12:133331719:-	ONLY_REF_SPLICE	NO	1	34	0.67	0.06	0.0136	0.0136	HGNC_GENEFAM,ZDHHC17->chr12:77157368-77247476:+,zinc_finger_DHHC-type_containing_17,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	KYSE140_OESOPHAGUS	0.06	0.67	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000823
SNU175_LARGE_INTESTINE	SLC38A2--PTMA	112	0	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3222	0	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SNU175_LARGE_INTESTINE	1	1	1.3222	TRUE	0	0	0	10	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	HSPBP1--ZSWIM6	101	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1924	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	SNU175_LARGE_INTESTINE	1	1	1.1924	TRUE	47	32	1	28	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	ZNF654--HMGB2	57	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6729	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU175_LARGE_INTESTINE	1	1	0.6729	TRUE	0	0	0	518	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	TIMM23B--LINC00843	42	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.4958	0.366	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU175_LARGE_INTESTINE	0.99	1	0.8618	TRUE	508	994	45	981	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	PLXDC1--TAF13	34	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4014	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SNU175_LARGE_INTESTINE	1	1	0.4014	TRUE	7	10	0	216	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-TA--MT-TC	28	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3306	0.059	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU175_LARGE_INTESTINE	1	1	0.3896	FALSE	462	80	0	856	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	SLC12A2--RAD51	28	4	SLC12A2	33584	chr5:127523981:+	RAD51	41883	chr15:40993985:+	INCL_NON_REF_SPLICE	YES	495	158	0.06	0.17	0.3306	0.0472	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,RAD51->ArcherDX_panel,FoundationOne_panel,RAD51_recombinase,chr15:40986972-41024354:+	SNU175_LARGE_INTESTINE	0.06	0.17	0.3778	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	RP11-123O10.4--GRIP1	24	10	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2833	0.1181	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU175_LARGE_INTESTINE	1	1	0.4014	FALSE	416	2512	207	587	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	SLC12A2--RAD51	20	4	SLC12A2	33584	chr5:127523981:+	RAD51	41882	chr15:40993984:+	INCL_NON_REF_SPLICE	YES	495	158	0.05	0.13	0.2361	0.0472	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,RAD51->ArcherDX_panel,FoundationOne_panel,RAD51_recombinase,chr15:40986972-41024354:+	SNU175_LARGE_INTESTINE	0.05	0.13	0.2833	TRUE	0	0	0	1	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	NIPA2--POLA1	19	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2243	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SNU175_LARGE_INTESTINE	1	1	0.2243	TRUE	46	1352	75	139	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	TIMM23--RP11-464F9.1	17	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	340	11	0.05	0.63	0.2007	0.0236	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU175_LARGE_INTESTINE	0.05	0.63	0.2243	TRUE	519	3926	326	965	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	15	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10966	8	0	0.67	0.1771	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	0.67	0.1889	FALSE	230	198	14	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	8	27	PPP1R16A	1554	chr8:145703905:+	FOXH1	14452	chr8:145701168:-	INCL_NON_REF_SPLICE	YES	78	24	0.31	0.59	0.0944	0.3188	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.31	0.59	0.4132	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	6	34	PPP1R16A	1714	chr8:145704065:+	FOXH1	14263	chr8:145701357:-	INCL_NON_REF_SPLICE	YES	86	9	0.32	0.82	0.0708	0.4014	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.32	0.82	0.4722	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	TULP4--SRP72P2	12	7	TULP4	6081	chr6:158870208:+	SRP72P2	30848	chr6:158658622:-	INCL_NON_REF_SPLICE	YES	17	4	0.53	0.83	0.1417	0.0826	LOCAL_INVERSION:+:-:[69863],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,SRP72P2->chr6:158658368-158663829:-,signal_recognition_particle_72kDa_pseudogene_2	SNU175_LARGE_INTESTINE	0.53	0.83	0.2243	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	5	30	PPP1R16A	1585	chr8:145703936:+	FOXH1	14452	chr8:145701168:-	INCL_NON_REF_SPLICE	YES	84	24	0.29	0.59	0.059	0.3542	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.29	0.59	0.4132	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	CALM3--MT-ND4L	11	5	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2174	0	0.01	1	0.1299	0.059	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU175_LARGE_INTESTINE	0.01	1	0.1889	FALSE	1	1	0	107	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	C15orf57--CBX3	8	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	50	106	0.31	0.17	0.0944	0.1653	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU175_LARGE_INTESTINE	0.17	0.31	0.2597	TRUE	267	562	48	632	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	4	30	PPP1R16A	1554	chr8:145703905:+	FOXH1	14263	chr8:145701357:-	INCL_NON_REF_SPLICE	YES	78	9	0.3	0.79	0.0472	0.3542	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.3	0.79	0.4014	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	SLC12A2--RAD51	8	4	SLC12A2	33584	chr5:127523981:+	RAD51	41881	chr15:40993983:+	INCL_NON_REF_SPLICE	YES	495	158	0.02	0.07	0.0944	0.0472	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,RAD51->ArcherDX_panel,FoundationOne_panel,RAD51_recombinase,chr15:40986972-41024354:+	SNU175_LARGE_INTESTINE	0.02	0.07	0.1416	TRUE	0	0	0	1	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	SLC12A2--RAD51	8	4	SLC12A2	33584	chr5:127523981:+	RAD51	41884	chr15:40993986:+	INCL_NON_REF_SPLICE	YES	495	158	0.02	0.07	0.0944	0.0472	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,RAD51->ArcherDX_panel,FoundationOne_panel,RAD51_recombinase,chr15:40986972-41024354:+	SNU175_LARGE_INTESTINE	0.02	0.07	0.1416	TRUE	0	0	0	1	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	RP11-120D5.1--MID1	8	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	17	0.73	0.39	0.0944	0.0354	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU175_LARGE_INTESTINE	0.39	0.73	0.1298	FALSE	16	356	14	466	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	7	6	PPP1R16A	1159	chr8:145703510:+	FOXH1	14976	chr8:145700644:-	ONLY_REF_SPLICE	YES	15	27	0.46	0.33	0.0826	0.0708	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.33	0.46	0.1534	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	10871	5	0	0.64	0.0944	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	0.64	0.1062	FALSE	230	193	14	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0944	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU175_LARGE_INTESTINE	1	1	0.0944	FALSE	462	80	0	856	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	4	16	PPP1R16A	1585	chr8:145703936:+	FOXH1	14976	chr8:145700644:-	INCL_NON_REF_SPLICE	YES	84	27	0.19	0.43	0.0472	0.1889	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.19	0.43	0.2361	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	6	6	PPP1R16A	1159	chr8:145703510:+	FOXH1	15014	chr8:145700606:-	ONLY_REF_SPLICE	YES	15	28	0.44	0.3	0.0708	0.0708	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.3	0.44	0.1416	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	5	MT-ND4	1540	chrM:11299:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18392	60	0	0.15	0.0708	0.059	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	0.15	0.1298	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	5	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.059	0.1063	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU175_LARGE_INTESTINE	0.93	1	0.1653	FALSE	515	4851	409	746	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ATP6--MT-CO1	7	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0826	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU175_LARGE_INTESTINE	1	1	0.0826	FALSE	183	104	9	328	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-TA--MT-TC	6	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0708	0.0472	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU175_LARGE_INTESTINE	1	1	0.118	FALSE	462	80	0	856	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	C15orf57--CBX3	4	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	48	108	0.24	0.12	0.0472	0.1299	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU175_LARGE_INTESTINE	0.12	0.24	0.1771	TRUE	267	562	48	632	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	SLC1A5--MT-ND4L	6	3	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1404	0	0.01	1	0.0708	0.0354	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU175_LARGE_INTESTINE	0.01	1	0.1062	FALSE	0	0	0	189	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3486	0	0	1	0.0708	0.0118	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU175_LARGE_INTESTINE	0	1	0.0826	FALSE	13	9	0	364	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	TYMS--SEPT9	6	1	TYMS	4286	chr18:662320:+	SEPT9	45878	chr17:75483506:+	ONLY_REF_SPLICE	YES	331	181	0.02	0.04	0.0708	0.0118	{Klijn_CCL:Lung=1,Urinary_Bladder=1},TYMS->chr18:657604-673578:+,thymidylate_synthetase,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	SNU175_LARGE_INTESTINE	0.02	0.04	0.0826	TRUE	0	9	0	5	1	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	8	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13959	60	0	0.17	0.0472	0.0944	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	0.17	0.1416	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	12	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	14156	0	0	1	0.0354	0.1417	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.1771	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	7	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	14182	0	0	1	0.0472	0.0826	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.1298	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	11	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	14415	0	0	1	0.0354	0.1299	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.1653	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND1--MT-RNR2	5	2	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	40	0	0.15	1	0.059	0.0236	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU175_LARGE_INTESTINE	0.15	1	0.0826	FALSE	114	26	4	85	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	10	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	14246	0	0	1	0.0354	0.1181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.1535	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	TULP4--SRP72P2	4	6	TULP4	6023	chr6:158870150:+	SRP72P2	30799	chr6:158658671:-	INCL_NON_REF_SPLICE	YES	25	7	0.29	0.59	0.0472	0.0708	LOCAL_INVERSION:+:-:[69863],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,SRP72P2->chr6:158658368-158663829:-,signal_recognition_particle_72kDa_pseudogene_2	SNU175_LARGE_INTESTINE	0.29	0.59	0.118	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	MT-CO3--MT-ATP8	5	1	MT-CO3	1075	chrM:9281:+	MT-ATP8	4817	chrM:8398:+	INCL_NON_REF_SPLICE	YES	368	0	0.02	1	0.059	0.0118	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0.02	1	0.0708	FALSE	16	100	1	11	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	1	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	5405	0	0	1	0.059	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.0708	FALSE	230	193	14	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	9	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	14147	0	0	1	0.0354	0.1063	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.1417	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	1	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	YES	11299	0	0	1	0.059	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.0708	FALSE	231	204	14	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10871	8	0	0.43	0.059	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	0.43	0.0708	FALSE	230	193	14	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13142	8	0	0.43	0.059	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	0.43	0.0708	FALSE	231	205	14	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	9	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	12300	178	0	0.06	0.0354	0.1063	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	0.06	0.1417	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	8	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	14393	0	0	1	0.0354	0.0944	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.1298	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.059	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU175_LARGE_INTESTINE	1	1	0.059	FALSE	292	1546	117	613	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	1	16	PPP1R16A	1554	chr8:145703905:+	FOXH1	15014	chr8:145700606:-	ONLY_REF_SPLICE	YES	78	28	0.18	0.38	0.0118	0.1889	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.18	0.38	0.2007	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	PPP1R16A--FOXH1	1	16	PPP1R16A	1554	chr8:145703905:+	FOXH1	14976	chr8:145700644:-	ONLY_REF_SPLICE	NO	78	27	0.18	0.39	0.0118	0.1889	LOCAL_INVERSION:+:-:[1634],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	SNU175_LARGE_INTESTINE	0.18	0.39	0.2007	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	SLC12A2--RAD51	4	4	SLC12A2	33584	chr5:127523981:+	RAD51	41880	chr15:40993982:+	INCL_NON_REF_SPLICE	YES	495	158	0.02	0.05	0.0472	0.0472	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,RAD51->ArcherDX_panel,FoundationOne_panel,RAD51_recombinase,chr15:40986972-41024354:+	SNU175_LARGE_INTESTINE	0.02	0.05	0.0944	TRUE	0	0	0	1	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-CO3--MT-ATP8	4	3	MT-CO3	1550	chrM:9756:+	MT-ATP8	4891	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12801	0	0	1	0.0472	0.0354	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.0826	FALSE	16	100	1	11	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	7	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	16309	0	0	1	0.0354	0.0826	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.118	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	3	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	18099	675	0	0.01	0.0472	0.0354	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	0.01	0.0826	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	7	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	16309	0	0	1	0.0354	0.0826	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.118	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-TA--MT-TC	3	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0.0826	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU175_LARGE_INTESTINE	1	1	0.118	FALSE	462	80	0	856	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	PFKL--MT-ND4L	4	3	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	605	0	0.01	1	0.0472	0.0354	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU175_LARGE_INTESTINE	0.01	1	0.0826	FALSE	0	0	0	33	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-CO2--MT-CO1	3	6	MT-CO2	1334	chrM:7919:+	MT-CO1	5308	chrM:6527:+	INCL_NON_REF_SPLICE	YES	4	22597	0.69	0	0.0354	0.0708	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU175_LARGE_INTESTINE	0	0.69	0.1062	FALSE	36	10	0	27	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	6	MT-ND4	1469	chrM:11228:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	16614	0	0	1	0.0354	0.0708	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.1062	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	6	MT-ND4	1486	chrM:11245:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	16346	0	0	1	0.0354	0.0708	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.1062	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	C17orf76-AS1--SEPT9	4	1	C17orf76-AS1	1593	chr17:16342728:+	SEPT9	45890	chr17:75483506:+	ONLY_REF_SPLICE	YES	212	181	0.02	0.03	0.0472	0.0118	C17orf76-AS1->chr17:16342136-16381992:+,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	SNU175_LARGE_INTESTINE	0.02	0.03	0.059	TRUE	0	3	0	6	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	EIF1--RPS28	4	1	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	9	0	0.36	1	0.0472	0.0118	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SNU175_LARGE_INTESTINE	0.36	1	0.059	TRUE	0	0	0	81	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	16364	0	0	1	0.0354	0.059	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.0944	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	1	MT-ND4	1294	chrM:11053:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	14248	3	0	0.62	0.0472	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	0.62	0.059	FALSE	231	205	14	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	5	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	14418	8	0	0.5	0.0354	0.059	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	0.5	0.0944	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	13959	1706	0	0	0.0354	0.059	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	0	0.0944	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-TA--MT-TC	3	5	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0.059	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU175_LARGE_INTESTINE	1	1	0.0944	FALSE	462	80	0	856	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	EEF2--RPLP1	3	4	EEF2	9763	chr19:3976549:-	RPLP1	13293	chr15:69745157:+	INCL_NON_REF_SPLICE	YES	5460	0	0	1	0.0354	0.0472	GTEx&tcga_normals:2/3694=0.05%,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	SNU175_LARGE_INTESTINE	0	1	0.0826	FALSE	0	0	0	3	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	RCC1--ICA1	4	0	RCC1	2175	chr1:28834672:+	ICA1	32692	chr7:8183602:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0472	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ICA1->chr7:8152814-8302317:-,islet_cell_autoantigen_1	SNU175_LARGE_INTESTINE	1	1	0.0472	TRUE	0	6	0	3	2	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	TMEM54--MT-CO2	4	0	TMEM54	2326	chr1:33363811:-	MT-CO2	8517	chrM:7597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	TMEM54->chr1:33360195-33367039:-,transmembrane_protein_54,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU175_LARGE_INTESTINE	1	1	0.0472	FALSE	0	0	0	10	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	17267	5	0	0.55	0.0354	0.0354	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	0.55	0.0708	FALSE	231	217	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1369	chrM:11128:+	MT-ATP8	5476	chrM:8463:+	INCL_NON_REF_SPLICE	YES	17431	3	0	0.67	0.0354	0.0354	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	0.67	0.0708	FALSE	231	216	16	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3463	25543	0	0	0.0354	0.0236	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU175_LARGE_INTESTINE	0	0	0.059	FALSE	183	104	9	328	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-CO2--MT-CO1	3	2	MT-CO2	1396	chrM:7981:+	MT-CO1	5894	chrM:7113:+	INCL_NON_REF_SPLICE	YES	1	1583	0.83	0	0.0354	0.0236	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU175_LARGE_INTESTINE	0	0.83	0.059	FALSE	36	10	0	27	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	EIF1--RPS28	3	1	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	115	0	0.03	1	0.0354	0.0118	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SNU175_LARGE_INTESTINE	0.03	1	0.0472	TRUE	0	0	0	81	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	10850	21769	0	0	0.0354	0.0118	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU175_LARGE_INTESTINE	0	0	0.0472	FALSE	183	104	9	328	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-CO3--MT-ATP8	3	1	MT-CO3	1105	chrM:9311:+	MT-ATP8	4840	chrM:8421:+	INCL_NON_REF_SPLICE	YES	559	0	0.01	1	0.0354	0.0118	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0.01	1	0.0472	FALSE	16	100	1	11	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-CO3--MT-ATP8	3	1	MT-CO3	1138	chrM:9344:+	MT-ATP8	4906	chrM:8487:+	INCL_NON_REF_SPLICE	YES	5552	0	0	1	0.0354	0.0118	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.0472	FALSE	16	100	1	11	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-CO3--MT-ATP8	3	1	MT-CO3	1124	chrM:9330:+	MT-ATP8	4846	chrM:8427:+	INCL_NON_REF_SPLICE	YES	3411	0	0	1	0.0354	0.0118	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.0472	FALSE	16	100	1	11	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1244	chrM:11003:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	11316	675	0	0.01	0.0354	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	0.01	0.0472	FALSE	231	204	14	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	11373	0	0	1	0.0354	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.0472	FALSE	231	204	14	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	11390	0	0	1	0.0354	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU175_LARGE_INTESTINE	0	1	0.0472	FALSE	231	204	14	283	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0118	0.1063	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU175_LARGE_INTESTINE	1	1	0.1181	FALSE	407	2205	196	549	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	EIF1--RPL5	3	0	EIF1	1103	chr17:39845239:+	RPL5	7818	chr1:93297615:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	SNU175_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	39	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	EIF1--RPS28	3	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SNU175_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	81	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU175_LARGE_INTESTINE	1	1	0.0354	FALSE	183	104	9	328	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5332	chrM:6554:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU175_LARGE_INTESTINE	1	1	0.0354	FALSE	183	104	9	328	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	TNRC18--MT-CO3	3	0	TNRC18	14190	chr7:5413935:-	MT-CO3	41985	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU175_LARGE_INTESTINE	1	1	0.0354	FALSE	0	0	0	1	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	RP11-120D5.1--MID1	2	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	17	0.44	0.19	0.0236	0.0236	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU175_LARGE_INTESTINE	0.19	0.44	0.0472	FALSE	0	48	1	163	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	RP11-108K3.1--GLDN	2	1	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0.0118	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU175_LARGE_INTESTINE	1	1	0.0354	FALSE	0	19	0	46	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	ADK--PHF23	2	0	ADK	1142	chr10:75911101:+	PHF23	22033	chr17:7140979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ADK->adenosine_kinase,chr10:75910960-76469061:+,PHF23->PHD_finger_protein_23,chr17:7138347-7143041:-	SNU175_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	ANKMY2--AGR2	2	0	ANKMY2	5495	chr7:16664608:-	AGR2	25764	chr7:16834643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ANKMY2->ankyrin_repeat_and_MYND_domain_containing_2,chr7:16639401-16685442:-,AGR2->anterior_gradient_2,_protein_disulphide_isomerase_family_member,chr7:16831435-16873057:-	SNU175_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	HUWE1--USP9X	2	0	HUWE1	41334	chrX:53607791:-	USP9X	115078	chrX:41073821:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,USP9X->chrX:40944888-41095832:+,ubiquitin_specific_peptidase_9,_X-linked	SNU175_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU175_LARGE_INTESTINE	1	1	0.0236	FALSE	125	705	46	456	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	RP11-108K3.1--GLDN	2	0	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU175_LARGE_INTESTINE	1	1	0.0236	FALSE	0	30	1	55	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	SSR1--SNRNP48	2	0	SSR1	5569	chr6:7303783:-	SNRNP48	35197	chr6:7609058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	SSR1->chr6:7268539-7347679:-,signal_sequence_receptor,_alpha,SNRNP48->chr6:7590432-7612200:+,small_nuclear_ribonucleoprotein_U11/U12_subunit_48	SNU175_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000989
SNU175_LARGE_INTESTINE	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU175_LARGE_INTESTINE	1	1	0.0236	TRUE	62	24	1	171	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	YWHAZ--ZNF706	2	0	YWHAZ	2460	chr8:101964157:-	ZNF706	24352	chr8:102213971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_FI:{Skin=[count:2=pct:0.6],Blood=[count:2=pct:1.1],Esophagus=[count:1=pct:0.2],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta,ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706	SNU175_LARGE_INTESTINE	1	1	0.0236	TRUE	5	5	0	7	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	RP11-120D5.1--MID1	1	3	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	5	17	0.44	0.19	0.0118	0.0354	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU175_LARGE_INTESTINE	0.19	0.44	0.0472	FALSE	2	31	0	60	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	RP11-1L12.3--SLC5A12	1	3	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0118	0.0354	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	SNU175_LARGE_INTESTINE	0.57	1	0.0472	TRUE	3	101	0	60	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	TIMM23--RP11-464F9.1	1	2	TIMM23	5841	chr10:51610393:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	387	11	0.01	0.21	0.0118	0.0236	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU175_LARGE_INTESTINE	0.01	0.21	0.0354	FALSE	1	12	0	11	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	C14orf37--PSMA3	1	1	C14orf37	2258	chr14:58758353:-	PSMA3	24451	chr14:58718837:+	ONLY_REF_SPLICE	NO	0	730	1	0	0.0118	0.0118	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	SNU175_LARGE_INTESTINE	0	1	0.0236	FALSE	1	3	0	9	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	CCDC91--KLHL42	1	1	CCDC91	18961	chr12:28460682:+	KLHL42	38573	chr12:27944641:+	ONLY_REF_SPLICE	YES	57	84	0.03	0.02	0.0118	0.0118	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,KLHL42->chr12:27932953-27955973:+,kelch_like_family_member_42	SNU175_LARGE_INTESTINE	0.02	0.03	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	CHCHD3--EXOC4	1	1	CHCHD3	1232	chr7:132766617:-	EXOC4	27342	chr7:133041084:+	ONLY_REF_SPLICE	YES	656	145	0	0.01	0.0118	0.0118	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	SNU175_LARGE_INTESTINE	0	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	GGACT--PCCA	1	1	GGACT	3102	chr13:101236079:-	PCCA	40151	chr13:101179929:+	ONLY_REF_SPLICE	YES	78	122	0.03	0.02	0.0118	0.0118	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	SNU175_LARGE_INTESTINE	0.02	0.03	0.0236	TRUE	7	15	0	10	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	GRTP1--TMCO3	1	1	GRTP1	6419	chr13:113999178:-	TMCO3	19843	chr13:114164553:+	ONLY_REF_SPLICE	YES	80	320	0.02	0.01	0.0118	0.0118	GRTP1->chr13:113978505-114018446:-,growth_hormone_regulated_TBC_protein_1,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	SNU175_LARGE_INTESTINE	0.01	0.02	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	MIR3916--PIWIL4	1	1	MIR3916	1166	chr1:247373993:-	PIWIL4	18302	chr11:94316614:+	ONLY_REF_SPLICE	YES	77	10	0.03	0.17	0.0118	0.0118	MIR3916->chr1:247353153-247374158:-,chr1:247365269-247365362:-,microRNA_3916,PIWIL4->chr11:94277006-94354587:+,piwi_like_RNA-mediated_gene_silencing_4	SNU175_LARGE_INTESTINE	0.03	0.17	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	PSPH--CCT6A	1	1	PSPH	5746	chr7:56099622:-	CCT6A	18220	chr7:56123317:+	ONLY_REF_SPLICE	YES	219	1431	0.01	0	0.0118	0.0118	LOCAL_INVERSION:-:+:[26],PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	SNU175_LARGE_INTESTINE	0	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	PSPH--GBAS	1	1	PSPH	2581	chr7:56110841:-	GBAS	23151	chr7:56051421:+	ONLY_REF_SPLICE	YES	165	422	0.01	0	0.0118	0.0118	LOCAL_INVERSION:-:+:[10870],PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase,GBAS->chr7:56019486-56067874:+,glioblastoma_amplified_sequence	SNU175_LARGE_INTESTINE	0	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	SCNN1A--STARD10	1	1	SCNN1A	10091	chr12:6463604:-	STARD10	25406	chr11:72470426:-	ONLY_REF_SPLICE	YES	698	908	0	0	0.0118	0.0118	SCNN1A->chr12:6456009-6486896:-,sodium_channel_epithelial_1_alpha_subunit,STARD10->StAR_related_lipid_transfer_domain_containing_10,chr11:72465774-72504726:-	SNU175_LARGE_INTESTINE	0	0	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000989
SNU175_LARGE_INTESTINE	SPAG5-AS1--SDF2	1	1	SPAG5-AS1	2066	chr17:26926873:+	SDF2	15622	chr17:26982501:-	ONLY_REF_SPLICE	YES	1	169	0.67	0.01	0.0118	0.0118	LOCAL_INVERSION:+:-:[30981],SPAG5-AS1->SPAG5_antisense_RNA_1,chr17:26925808-26944393:+,SDF2->chr17:26975374-26989207:-,stromal_cell_derived_factor_2	SNU175_LARGE_INTESTINE	0.01	0.67	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000989
HS746T_STOMACH	TIMM23B--LINC00843	107	60	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0772	0.604	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS746T_STOMACH	1	1	1.6812	TRUE	508	994	45	981	0	FALSE	ACH-000616
HS746T_STOMACH	GLIS3--RP11-475I24.1	62	62	GLIS3	8603	chr9:4286038:-	RP11-475I24.1	37503	chr9:44345689:-	ONLY_REF_SPLICE	YES	46	0	0.73	1	0.6242	0.6242	GLIS3->GLIS_family_zinc_finger_3,chr9:3824127-4348392:-,RP11-475I24.1->chr9:44343366-44345689:-	HS746T_STOMACH	0.73	1	1.2484	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	TIMM23--RP11-464F9.1	60	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	385	12	0.14	0.84	0.604	0.0503	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS746T_STOMACH	0.14	0.84	0.6543	TRUE	519	3926	326	965	0	FALSE	ACH-000616
HS746T_STOMACH	ST7--GS1-124K5.12	23	46	ST7	1454	chr7:116593745:+	GS1-124K5.12	44028	chr7:66019824:-	ONLY_REF_SPLICE	YES	992	113	0.07	0.38	0.2315	0.4631	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,GS1-124K5.12->chr7:66010634-66057373:-	HS746T_STOMACH	0.07	0.38	0.6946	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	SLC30A7--UROC1	28	17	SLC30A7	8217	chr1:101387397:+	UROC1	35043	chr3:126214951:-	ONLY_REF_SPLICE	YES	75	0	0.38	1	0.2819	0.1711	{Klijn_CCL:Stomach=1},SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7,UROC1->chr3:126200124-126236616:-,urocanate_hydratase_1	HS746T_STOMACH	0.38	1	0.453	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	IGSF3--GGT1	28	16	IGSF3	13001	chr1:117131316:-	GGT1	26899	chr22:25003921:+	ONLY_REF_SPLICE	YES	2	7	0.96	0.86	0.2819	0.1611	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	HS746T_STOMACH	0.86	0.96	0.443	TRUE	1	1	0	8	1	TRUE	ACH-000616
HS746T_STOMACH	GPC6--GPC5	24	27	GPC6	2934	chr13:94197674:+	GPC5	28531	chr13:93518535:+	ONLY_REF_SPLICE	YES	96	0	0.35	1	0.2416	0.2718	HGNC_GENEFAM,PROTCLUST,YOSHIHARA_TCGA_num_samples[HNSC:1|KIRC:1],GPC6->chr13:93879095-95059655:+,glypican_6,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	HS746T_STOMACH	0.35	1	0.5134	TRUE	0	1	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	XYLB--GOLGA4	21	28	XYLB	17429	chr3:38420833:+	GOLGA4	63408	chr3:37402734:+	ONLY_REF_SPLICE	YES	26	297	0.65	0.14	0.2114	0.2819	XYLB->chr3:38388251-38462839:+,xylulokinase_homolog_(H._influenzae),GOLGA4->chr3:37284668-37408242:+,golgin_A4	HS746T_STOMACH	0.14	0.65	0.4933	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	PLXDC1--TAF13	27	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2718	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS746T_STOMACH	1	1	0.2718	TRUE	7	10	0	216	0	FALSE	ACH-000616
HS746T_STOMACH	CLASP1--NRCAM	22	19	CLASP1	2696	chr2:122363277:-	NRCAM	62910	chr7:107953175:-	ONLY_REF_SPLICE	YES	62	16	0.4	0.72	0.2215	0.1913	CLASP1->chr2:122095352-122407163:-,cytoplasmic_linker_associated_protein_1,NRCAM->Oncogene{Bushman},chr7:107788068-108097161:-,neuronal_cell_adhesion_molecule	HS746T_STOMACH	0.4	0.72	0.4128	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	GLIS3--RP11-475I24.1	20	20	GLIS3	6080	chr9:4299421:-	RP11-475I24.1	37503	chr9:44345689:-	ONLY_REF_SPLICE	YES	60	0	0.4	1	0.2013	0.2013	GLIS3->GLIS_family_zinc_finger_3,chr9:3824127-4348392:-,RP11-475I24.1->chr9:44343366-44345689:-	HS746T_STOMACH	0.4	1	0.4026	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	BIRC6--ITGA9	19	15	BIRC6	24030	chr2:32673996:+	ITGA9	99672	chr3:37567517:+	ONLY_REF_SPLICE	YES	48	0	0.41	1	0.1913	0.151	BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,ITGA9->Oncogene{Bushman},chr3:37493606-37865005:+,integrin_subunit_alpha_9	HS746T_STOMACH	0.41	1	0.3423	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	PXN--PLA2G1B	16	25	PXN	1155	chr12:120703420:-	PLA2G1B	24329	chr12:120763823:-	ONLY_REF_SPLICE	YES	120	0	0.25	1	0.1611	0.2517	{Klijn_CCL:Stomach=1,Lung=1},LOCAL_REARRANGEMENT:-:[56340],PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,PLA2G1B->chr12:120759914-120765592:-,phospholipase_A2_group_IB	HS746T_STOMACH	0.25	1	0.4128	TRUE	0	2	0	2	2	TRUE	ACH-000616
HS746T_STOMACH	ZNF654--HMGB2	20	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2013	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HS746T_STOMACH	1	1	0.2013	TRUE	0	0	0	518	0	FALSE	ACH-000616
HS746T_STOMACH	XYLB--GOLGA4	13	22	XYLB	17429	chr3:38420833:+	GOLGA4	64471	chr3:37407571:+	ONLY_REF_SPLICE	YES	26	303	0.57	0.1	0.1309	0.2215	XYLB->chr3:38388251-38462839:+,xylulokinase_homolog_(H._influenzae),GOLGA4->chr3:37284668-37408242:+,golgin_A4	HS746T_STOMACH	0.1	0.57	0.3524	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	ZBTB40--ZMYM4	15	14	ZBTB40	1154	chr1:22778497:+	ZMYM4	29791	chr1:35790961:+	ONLY_REF_SPLICE	YES	23	36	0.56	0.45	0.151	0.1409	ZBTB40->chr1:22778344-22857650:+,zinc_finger_and_BTB_domain_containing_40,ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4	HS746T_STOMACH	0.45	0.56	0.2919	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	PARD3--RP11-297A16.2	17	5	PARD3	1450	chr10:35103804:-	RP11-297A16.2	41752	chr10:35389988:-	ONLY_REF_SPLICE	YES	33	0	0.4	1	0.1711	0.0503	PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,RP11-297A16.2->chr10:35386934-35415948:-	HS746T_STOMACH	0.4	1	0.2214	TRUE	0	3	0	1	3	TRUE	ACH-000616
HS746T_STOMACH	PDE6B--PPP2R2D	18	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1812	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	HS746T_STOMACH	1	1	0.1812	TRUE	7	65	3	22	0	FALSE	ACH-000616
HS746T_STOMACH	C15orf57--CBX3	13	18	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	83	86	0.27	0.26	0.1309	0.1812	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS746T_STOMACH	0.26	0.27	0.3121	TRUE	267	562	48	632	0	FALSE	ACH-000616
HS746T_STOMACH	EPHB2--TMEM39B	16	0	EPHB2	1205	chr1:23037536:+	TMEM39B	29462	chr1:32540552:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1611	0	EPHB2->EPH_receptor_B2,chr1:23037332-23241818:+,TMEM39B->chr1:32537632-32568467:+,transmembrane_protein_39B	HS746T_STOMACH	1	1	0.1611	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	MT-ND6--MT-TE	16	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1611	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS746T_STOMACH	1	1	0.1611	FALSE	499	1288	110	792	0	FALSE	ACH-000616
HS746T_STOMACH	CHST11--SYK	12	13	CHST11	5138	chr12:104995769:+	SYK	16838	chr9:93606140:+	ONLY_REF_SPLICE	YES	42	0	0.37	1	0.1208	0.1309	CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase	HS746T_STOMACH	0.37	1	0.2517	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	LPAR1--SUSD1	15	0	LPAR1	1535	chr9:113800447:-	SUSD1	32863	chr9:114814718:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.151	0	LPAR1->Oncogene{Bushman},chr9:113635543-113800981:-,lysophosphatidic_acid_receptor_1,SUSD1->chr9:114803065-114937688:-,sushi_domain_containing_1	HS746T_STOMACH	1	1	0.151	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	MT-ND6--MT-TE	14	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1409	0.0101	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS746T_STOMACH	1	1	0.151	FALSE	499	1288	110	792	0	FALSE	ACH-000616
HS746T_STOMACH	CTB-30L5.1--SLC26A3	13	4	CTB-30L5.1	1155	chr7:106239200:-	SLC26A3	15832	chr7:107420208:-	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.1309	0.0403	CTB-30L5.1->chr7:106211393-106239354:-,SLC26A3->chr7:107405912-107443670:-,solute_carrier_family_26_member_3	HS746T_STOMACH	0.94	1	0.1712	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	MT-TA--MT-TC	12	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1208	0.0101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS746T_STOMACH	1	1	0.1309	FALSE	462	80	0	856	0	FALSE	ACH-000616
HS746T_STOMACH	MT-CO3--MT-ATP6	8	12	MT-CO3	1666	chrM:9872:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.87	0.0805	0.1208	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS746T_STOMACH	0.87	1	0.2013	FALSE	189	492	56	216	0	FALSE	ACH-000616
HS746T_STOMACH	MT-ND6--MT-TE	10	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1007	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS746T_STOMACH	1	1	0.1007	FALSE	499	1288	110	792	0	FALSE	ACH-000616
HS746T_STOMACH	NRIP1--AF127936.7	8	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.0805	0.0403	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS746T_STOMACH	0.8	1	0.1208	FALSE	292	1546	117	613	0	FALSE	ACH-000616
HS746T_STOMACH	RP11-680G10.1--GSE1	8	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0805	0.0302	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS746T_STOMACH	0.92	1	0.1107	TRUE	458	1351	185	561	0	FALSE	ACH-000616
HS746T_STOMACH	PSMB2--CELF4	7	6	PSMB2	1503	chr1:36106943:-	CELF4	13384	chr18:35109151:-	ONLY_REF_SPLICE	YES	2333	0	0.01	1	0.0705	0.0604	PSMB2->chr1:36067185-36107445:-,proteasome_subunit_beta_2,CELF4->CUGBP,_Elav-like_family_member_4,chr18:34823010-35146000:-	HS746T_STOMACH	0.01	1	0.1309	TRUE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	C15orf57--CBX3	5	13	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	79	88	0.19	0.17	0.0503	0.1309	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS746T_STOMACH	0.17	0.19	0.1812	TRUE	267	562	48	632	0	FALSE	ACH-000616
HS746T_STOMACH	CUX1--AC016700.2	7	4	CUX1	18624	chr7:101801888:+	AC016700.2	59392	chr2:70321066:+	ONLY_REF_SPLICE	YES	188	0	0.06	1	0.0705	0.0403	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,AC016700.2->chr2:70316853-70323232:+	HS746T_STOMACH	0.06	1	0.1108	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	MT-CO3--MT-ATP6	7	4	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	7	0	0.61	1	0.0705	0.0403	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS746T_STOMACH	0.61	1	0.1108	FALSE	189	492	56	216	0	FALSE	ACH-000616
HS746T_STOMACH	NRIP1--AF127936.7	4	16	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	67	0	0.23	1	0.0403	0.1611	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS746T_STOMACH	0.23	1	0.2014	FALSE	164	806	69	479	0	FALSE	ACH-000616
HS746T_STOMACH	ZFP62--SIMC1	6	6	ZFP62	3439	chr5:180278381:-	SIMC1	27372	chr5:175772186:+	ONLY_REF_SPLICE	YES	54	66	0.18	0.15	0.0604	0.0604	ZFP62->ZFP62_zinc_finger_protein,chr5:180274611-180288286:-,SIMC1->SUMO_interacting_motifs_containing_1,chr5:175665365-175772994:+	HS746T_STOMACH	0.15	0.18	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	IGSF3--GGT1	4	13	IGSF3	13000	chr1:117131317:-	GGT1	26901	chr22:25003923:+	INCL_NON_REF_SPLICE	YES	2	6	0.89	0.74	0.0403	0.1309	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	HS746T_STOMACH	0.74	0.89	0.1712	TRUE	1	1	0	8	1	TRUE	ACH-000616
HS746T_STOMACH	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0705	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS746T_STOMACH	1	1	0.0705	FALSE	462	80	0	856	0	FALSE	ACH-000616
HS746T_STOMACH	RP11-120D5.1--MID1	6	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	182	0.6	0.05	0.0604	0.0302	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HS746T_STOMACH	0.05	0.6	0.0906	FALSE	16	356	14	466	0	FALSE	ACH-000616
HS746T_STOMACH	ZFP62--SIMC1	4	10	ZFP62	3439	chr5:180278381:-	SIMC1	26287	chr5:175764065:+	ONLY_REF_SPLICE	YES	54	77	0.21	0.15	0.0403	0.1007	ZFP62->ZFP62_zinc_finger_protein,chr5:180274611-180288286:-,SIMC1->SUMO_interacting_motifs_containing_1,chr5:175665365-175772994:+	HS746T_STOMACH	0.15	0.21	0.141	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	RP11-96H19.1--RP11-446N19.1	5	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	1	0.67	0.91	0.0503	0.0503	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS746T_STOMACH	0.67	0.91	0.1006	FALSE	515	4851	409	746	0	FALSE	ACH-000616
HS746T_STOMACH	XYLB--GOLGA4	2	17	XYLB	16332	chr3:38418482:+	GOLGA4	63408	chr3:37402734:+	ONLY_REF_SPLICE	YES	27	297	0.41	0.06	0.0201	0.1711	XYLB->chr3:38388251-38462839:+,xylulokinase_homolog_(H._influenzae),GOLGA4->chr3:37284668-37408242:+,golgin_A4	HS746T_STOMACH	0.06	0.41	0.1912	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	AC073130.3--CAV2	6	0	AC073130.3	1065	chr7:115967886:-	CAV2	13668	chr7:115959695:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0604	0	NUCLCLUST,NEIGHBORS_OVERLAP:-:+:[40516],AC073130.3->chr7:115877983-115967950:-,CAV2->caveolin_2,chr7:115927434-116148595:+	HS746T_STOMACH	1	1	0.0604	FALSE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	PRR16--CTD-2334D19.1	4	8	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	69	0	0.15	1	0.0403	0.0805	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS746T_STOMACH	0.15	1	0.1208	FALSE	56	216	12	147	0	FALSE	ACH-000616
HS746T_STOMACH	XYLB--GOLGA4	3	12	XYLB	16332	chr3:38418482:+	GOLGA4	64471	chr3:37407571:+	ONLY_REF_SPLICE	YES	27	303	0.36	0.05	0.0302	0.1208	XYLB->chr3:38388251-38462839:+,xylulokinase_homolog_(H._influenzae),GOLGA4->chr3:37284668-37408242:+,golgin_A4	HS746T_STOMACH	0.05	0.36	0.151	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	CTD-2337A12.1--CAST	5	3	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	72	1	0.1	0.0503	0.0302	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS746T_STOMACH	0.1	1	0.0805	TRUE	347	1186	183	220	0	FALSE	ACH-000616
HS746T_STOMACH	EDEM2--PTPRT	4	6	EDEM2	2221	chr20:33859808:-	PTPRT	31626	chr20:41101202:-	ONLY_REF_SPLICE	YES	14	0	0.42	1	0.0403	0.0604	EDEM2->ER_degradation_enhancing_alpha-mannosidase_like_protein_2,chr20:33703167-33865928:-,PTPRT->Oncogene{Bushman},chr20:40701392-41818610:-,protein_tyrosine_phosphatase,_receptor_type_T	HS746T_STOMACH	0.42	1	0.1007	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	MT-CO3--MT-ATP6	3	10	MT-CO3	1153	chrM:9359:+	MT-ATP6	5072	chrM:8814:+	INCL_NON_REF_SPLICE	NO	6	15	0.68	0.46	0.0302	0.1007	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS746T_STOMACH	0.46	0.68	0.1309	FALSE	189	492	56	216	0	FALSE	ACH-000616
HS746T_STOMACH	SLC30A7--UROC1	1	18	SLC30A7	10458	chr1:101431474:+	UROC1	35043	chr3:126214951:-	ONLY_REF_SPLICE	YES	60	0	0.24	1	0.0101	0.1812	{Klijn_CCL:Stomach=1},SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7,UROC1->chr3:126200124-126236616:-,urocanate_hydratase_1	HS746T_STOMACH	0.24	1	0.1913	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	AGO3--PPP6R3	3	9	AGO3	25372	chr1:36524539:+	PPP6R3	43045	chr11:68272613:+	INCL_NON_REF_SPLICE	YES	31	56	0.28	0.18	0.0302	0.0906	AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+,PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3	HS746T_STOMACH	0.18	0.28	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	BIRC6--ITGA9	4	5	BIRC6	22896	chr2:32670736:+	ITGA9	100718	chr3:37574805:+	ONLY_REF_SPLICE	YES	62	0	0.13	1	0.0403	0.0503	BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,ITGA9->Oncogene{Bushman},chr3:37493606-37865005:+,integrin_subunit_alpha_9	HS746T_STOMACH	0.13	1	0.0906	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	MT-ND6--MT-TE	5	1	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0.0101	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS746T_STOMACH	1	1	0.0604	FALSE	499	1288	110	792	0	FALSE	ACH-000616
HS746T_STOMACH	NRIP1--AF127936.7	3	9	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	29	0	0.29	1	0.0302	0.0906	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS746T_STOMACH	0.29	1	0.1208	FALSE	125	705	46	456	0	FALSE	ACH-000616
HS746T_STOMACH	RP11-96H19.1--RP11-446N19.1	4	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.64	1	0.0403	0.0503	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS746T_STOMACH	0.64	1	0.0906	FALSE	407	2205	196	549	0	FALSE	ACH-000616
HS746T_STOMACH	AC073130.3--CAV2	5	0	AC073130.3	1065	chr7:115967886:-	CAV2	12589	chr7:115956486:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0503	0	NUCLCLUST,NEIGHBORS_OVERLAP:-:+:[40516],AC073130.3->chr7:115877983-115967950:-,CAV2->caveolin_2,chr7:115927434-116148595:+	HS746T_STOMACH	1	1	0.0503	FALSE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	HSP90B1--VN2R1P	5	0	HSP90B1	8016	chr12:104333369:+	VN2R1P	18150	chr3:155737499:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	HSP90B1->Oncogene{Bushman},chr12:104323885-104347423:+,heat_shock_protein_90kDa_beta_family_member_1,VN2R1P->chr3:155737435-155755475:+,vomeronasal_2_receptor_1_pseudogene	HS746T_STOMACH	1	1	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	BIRC6--ITGA9	2	11	BIRC6	24030	chr2:32673996:+	ITGA9	100718	chr3:37574805:+	ONLY_REF_SPLICE	NO	48	0	0.21	1	0.0201	0.1107	BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,ITGA9->Oncogene{Bushman},chr3:37493606-37865005:+,integrin_subunit_alpha_9	HS746T_STOMACH	0.21	1	0.1308	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	MT-CO3--MT-ATP6	3	7	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.83	0.0302	0.0705	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS746T_STOMACH	0.83	1	0.1007	FALSE	189	492	56	216	0	FALSE	ACH-000616
HS746T_STOMACH	CENPP--ASZ1	3	6	CENPP	13722	chr9:95378345:+	ASZ1	25716	chr7:117025863:-	INCL_NON_REF_SPLICE	YES	17	0	0.35	1	0.0302	0.0604	CENPP->centromere_protein_P,chr9:95087766-95382815:+,ASZ1->ankyrin_repeat,_SAM_and_basic_leucine_zipper_domain_containing_1,chr7:117003276-117068177:-	HS746T_STOMACH	0.35	1	0.0906	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	MT-CO3--MT-ATP6	4	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.55	1	0.0403	0.0201	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS746T_STOMACH	0.55	1	0.0604	FALSE	189	492	56	216	0	FALSE	ACH-000616
HS746T_STOMACH	NEK10--CCBE1	4	1	NEK10	17124	chr3:27343187:-	CCBE1	54726	chr18:57134123:-	ONLY_REF_SPLICE	YES	8	430	0.38	0.01	0.0403	0.0101	NEK10->NIMA_related_kinase_10,chr3:27151576-27410951:-,CCBE1->chr18:57098172-57364612:-,collagen_and_calcium_binding_EGF_domains_1	HS746T_STOMACH	0.01	0.38	0.0504	FALSE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	RP11-353N4.6--SEC22B	4	1	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	74	790	0.06	0.01	0.0403	0.0101	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HS746T_STOMACH	0.01	0.06	0.0504	FALSE	49	42	7	43	0	FALSE	ACH-000616
HS746T_STOMACH	AC002066.1--SYK	3	4	AC002066.1	1112	chr7:116139408:-	SYK	13879	chr9:93606140:+	ONLY_REF_SPLICE	YES	36	0	0.16	1	0.0302	0.0403	AC002066.1->chr7:115878314-116139519:-,SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase	HS746T_STOMACH	0.16	1	0.0705	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	HSP90B1--VN2R1P	4	0	HSP90B1	6912	chr12:104332216:+	VN2R1P	18151	chr3:155737500:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	HSP90B1->Oncogene{Bushman},chr12:104323885-104347423:+,heat_shock_protein_90kDa_beta_family_member_1,VN2R1P->chr3:155737435-155755475:+,vomeronasal_2_receptor_1_pseudogene	HS746T_STOMACH	1	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS746T_STOMACH	1	1	0.0403	FALSE	189	492	56	216	0	FALSE	ACH-000616
HS746T_STOMACH	LPAR1--SUSD1	3	3	LPAR1	1861	chr9:113800121:-	SUSD1	32863	chr9:114814718:-	ONLY_REF_SPLICE	YES	0	42	1	0.12	0.0302	0.0302	LPAR1->Oncogene{Bushman},chr9:113635543-113800981:-,lysophosphatidic_acid_receptor_1,SUSD1->chr9:114803065-114937688:-,sushi_domain_containing_1	HS746T_STOMACH	0.12	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	RP1-34H18.1--NAV3	3	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	3	1	0.62	0.0302	0.0201	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HS746T_STOMACH	0.62	1	0.0503	TRUE	254	575	65	124	0	FALSE	ACH-000616
HS746T_STOMACH	RP11-123O10.4--GRIP1	3	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0.0201	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HS746T_STOMACH	1	1	0.0503	FALSE	416	2512	207	587	0	FALSE	ACH-000616
HS746T_STOMACH	CTB-111H14.1--SLC26A3	2	5	CTB-111H14.1	6591	chr7:106250843:-	SLC26A3	28309	chr7:107420208:-	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.0201	0.0503	CTB-111H14.1->chr7:106012697-106410653:-,SLC26A3->chr7:107405912-107443670:-,solute_carrier_family_26_member_3	HS746T_STOMACH	0.88	1	0.0704	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	DGCR2--RP11-418J17.1	3	1	DGCR2	1327	chr22:19109641:-	RP11-418J17.1	31549	chr1:119805525:+	ONLY_REF_SPLICE	YES	209	0	0.02	1	0.0302	0.0101	DGCR2->DiGeorge_syndrome_critical_region_gene_2,chr22:19023795-19109967:-,RP11-418J17.1->chr1:119683019-119818596:+	HS746T_STOMACH	0.02	1	0.0403	TRUE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	MT-ND6--MT-TE	3	1	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.0101	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS746T_STOMACH	1	1	0.0403	FALSE	499	1288	110	792	0	FALSE	ACH-000616
HS746T_STOMACH	RP11-444D3.1--SOX5	3	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0.0101	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS746T_STOMACH	1	1	0.0403	TRUE	477	1352	189	275	0	FALSE	ACH-000616
HS746T_STOMACH	CENPP--ASZ1	2	4	CENPP	6079	chr9:95142141:+	ASZ1	25716	chr7:117025863:-	ONLY_REF_SPLICE	YES	248	0	0.02	1	0.0201	0.0403	CENPP->centromere_protein_P,chr9:95087766-95382815:+,ASZ1->ankyrin_repeat,_SAM_and_basic_leucine_zipper_domain_containing_1,chr7:117003276-117068177:-	HS746T_STOMACH	0.02	1	0.0604	TRUE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	CENPP--ASZ1	2	4	CENPP	6079	chr9:95142141:+	ASZ1	26665	chr7:117024914:-	ONLY_REF_SPLICE	NO	248	1	0.02	0.86	0.0201	0.0403	CENPP->centromere_protein_P,chr9:95087766-95382815:+,ASZ1->ankyrin_repeat,_SAM_and_basic_leucine_zipper_domain_containing_1,chr7:117003276-117068177:-	HS746T_STOMACH	0.02	0.86	0.0604	TRUE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	NDUFA4--PHF14	3	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HS746T_STOMACH	1	1	0.0302	TRUE	19	32	3	60	0	FALSE	ACH-000616
HS746T_STOMACH	PPFIBP1--SMCO2	3	0	PPFIBP1	4200	chr12:27731172:+	SMCO2	45492	chr12:27627719:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	HS746T_STOMACH	1	1	0.0302	TRUE	0	1	0	5	1	TRUE	ACH-000616
HS746T_STOMACH	RP11-307P5.1--SASH1	3	0	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HS746T_STOMACH	1	1	0.0302	TRUE	0	2	0	37	2	FALSE	ACH-000616
HS746T_STOMACH	BIRC6--ITGA9	1	7	BIRC6	22896	chr2:32670736:+	ITGA9	99672	chr3:37567517:+	ONLY_REF_SPLICE	YES	62	0	0.11	1	0.0101	0.0705	BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,ITGA9->Oncogene{Bushman},chr3:37493606-37865005:+,integrin_subunit_alpha_9	HS746T_STOMACH	0.11	1	0.0806	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	ZNF101--CTC-260F20.3	2	3	ZNF101	1171	chr19:19779775:+	CTC-260F20.3	14796	chr19:19636991:+	ONLY_REF_SPLICE	YES	52	178	0.09	0.03	0.0201	0.0302	ZNF101->chr19:19779605-19794318:+,zinc_finger_protein_101,CTC-260F20.3->chr19:19627036-19646885:+	HS746T_STOMACH	0.03	0.09	0.0503	TRUE	0	1	0	1	1	FALSE	ACH-000616
HS746T_STOMACH	GPC6--GPC5	1	6	GPC6	1775	chr13:93879869:+	GPC5	28531	chr13:93518535:+	ONLY_REF_SPLICE	YES	93	0	0.07	1	0.0101	0.0604	HGNC_GENEFAM,PROTCLUST,YOSHIHARA_TCGA_num_samples[HNSC:1|KIRC:1],GPC6->chr13:93879095-95059655:+,glypican_6,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	HS746T_STOMACH	0.07	1	0.0705	TRUE	0	3	0	3	3	TRUE	ACH-000616
HS746T_STOMACH	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	3	0	0.7	1	0.0101	0.0604	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS746T_STOMACH	0.7	1	0.0705	FALSE	192	492	57	212	0	FALSE	ACH-000616
HS746T_STOMACH	TPST1--GS1-124K5.4	2	2	TPST1	8006	chr7:65821858:+	GS1-124K5.4	15884	chr7:65960242:+	ONLY_REF_SPLICE	YES	252	31	0.02	0.11	0.0201	0.0201	NEIGHBORS[73163],TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,GS1-124K5.4->chr7:65958693-65960461:+	HS746T_STOMACH	0.02	0.11	0.0402	FALSE	5	53	0	3	0	FALSE	ACH-000616
HS746T_STOMACH	CRYBG3--UBE2E2	2	1	CRYBG3	3814	chr3:97583491:+	UBE2E2	36250	chr3:23250183:+	ONLY_REF_SPLICE	YES	76	140	0.04	0.02	0.0201	0.0101	CRYBG3->chr3:97540884-97594132:+,chr3:97595819-97663810:+,crystallin_beta-gamma_domain_containing_3,UBE2E2->chr3:23244511-23633284:+,ubiquitin_conjugating_enzyme_E2_E2	HS746T_STOMACH	0.02	0.04	0.0302	TRUE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	RP11-353N4.6--SEC22B	1	5	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	NO	70	790	0.08	0.01	0.0101	0.0503	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HS746T_STOMACH	0.01	0.08	0.0604	FALSE	49	42	7	43	0	FALSE	ACH-000616
HS746T_STOMACH	TPST1--GS1-124K5.4	2	1	TPST1	5907	chr7:65751696:+	GS1-124K5.4	15884	chr7:65960242:+	ONLY_REF_SPLICE	YES	338	31	0.01	0.09	0.0201	0.0101	NEIGHBORS[73163],TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,GS1-124K5.4->chr7:65958693-65960461:+	HS746T_STOMACH	0.01	0.09	0.0302	FALSE	17	126	3	8	0	FALSE	ACH-000616
HS746T_STOMACH	AC073130.3--CAV2	2	0	AC073130.3	1065	chr7:115967886:-	CAV2	14787	chr7:115962856:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NUCLCLUST,NEIGHBORS_OVERLAP:-:+:[40516],AC073130.3->chr7:115877983-115967950:-,CAV2->caveolin_2,chr7:115927434-116148595:+	HS746T_STOMACH	1	1	0.0201	FALSE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	AC073130.3--TES	2	0	AC073130.3	1065	chr7:115967886:-	TES	16862	chr7:115897348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NEIGHBORS_OVERLAP:-:+:[20854],AC073130.3->chr7:115877983-115967950:-,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	HS746T_STOMACH	1	1	0.0201	FALSE	0	1	0	2	0	FALSE	ACH-000616
HS746T_STOMACH	AC093616.4--KDM3A	2	0	AC093616.4	14971	chr2:88037624:+	KDM3A	29064	chr2:86691176:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	AC093616.4->chr2:88000503-88038766:+,KDM3A->Oncogene{Bushman},chr2:86667770-86719839:+,lysine_demethylase_3A	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	APPBP2--TRAF3	2	0	APPBP2	17701	chr17:58531663:-	TRAF3	41973	chr14:103369592:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-,TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	C17orf76-AS1--TM9SF4	2	0	C17orf76-AS1	1593	chr17:16342728:+	TM9SF4	23690	chr20:30738425:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	C17orf76-AS1->chr17:16342136-16381992:+,TM9SF4->chr20:30697309-30755061:+,transmembrane_9_superfamily_member_4	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	CLASP1--NRCAM	2	0	CLASP1	1216	chr2:122406948:-	NRCAM	62910	chr7:107953175:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CLASP1->chr2:122095352-122407163:-,cytoplasmic_linker_associated_protein_1,NRCAM->Oncogene{Bushman},chr7:107788068-108097161:-,neuronal_cell_adhesion_molecule	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	CUX1--AC016700.2	1	4	CUX1	15927	chr7:101758553:+	AC016700.2	59392	chr2:70321066:+	ONLY_REF_SPLICE	NO	207	0	0.02	1	0.0101	0.0403	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,AC016700.2->chr2:70316853-70323232:+	HS746T_STOMACH	0.02	1	0.0504	TRUE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	DIAPH1--ETFA	2	0	DIAPH1	6381	chr5:140961879:-	ETFA	48345	chr15:76518270:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	DIAPH1->chr5:140894583-140998622:-,diaphanous_related_formin_1,ETFA->chr15:76507696-76603813:-,electron_transfer_flavoprotein_alpha_subunit	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	ECM1--CAPRIN2	2	0	ECM1	5729	chr1:150485288:+	CAPRIN2	11099	chr12:30906493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	ECM1->Oncogene{Bushman},chr1:150480538-150486265:+,extracellular_matrix_protein_1,CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	EMC4--TRRAP	2	0	EMC4	1660	chr15:34517859:+	TRRAP	18282	chr7:98497045:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	EMC4->ER_membrane_protein_complex_subunit_4,chr15:34517200-34522357:+,TRRAP->chr7:98475556-98610866:+,transformation/transcription_domain_associated_protein	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	FBRS--HDAC10	2	0	FBRS	11437	chr16:30680300:+	HDAC10	19386	chr22:50686721:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	FBRS->chr16:30669752-30682135:+,fibrosin,HDAC10->chr22:50683612-50689834:-,histone_deacetylase_10	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	FIGN--MTX2	2	0	FIGN	2110	chr2:164591413:-	MTX2	18733	chr2:177161588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	FIGN->chr2:164449906-164592522:-,fidgetin,MTX2->chr2:177134123-177202753:+,metaxin_2	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	FTX--RLIM	2	0	FTX	6478	chrX:73500229:-	RLIM	22362	chrX:73815835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	FTX->FTX_transcript,_XIST_regulator_(non-protein_coding),chrX:73183790-73513409:-,RLIM->chrX:73805052-73834452:-,ring_finger_protein,_LIM_domain_interacting	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	GMDS-AS1--KIAA1045	2	0	GMDS-AS1	3357	chr6:2263918:+	KIAA1045	36617	chr9:34976532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GMDS-AS1->GMDS_antisense_RNA_1_(head_to_head),chr6:2245982-2482256:+,KIAA1045->chr9:34957484-34982541:+	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	HMMR--NUDCD2	2	0	HMMR	1536	chr5:162887744:+	NUDCD2	22148	chr5:162884616:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	LOCAL_INVERSION:+:-:[63],HMMR->chr5:162887209-162918947:+,hyaluronan_mediated_motility_receptor,NUDCD2->NudC_domain_containing_2,chr5:162873532-162887146:-	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	IFFO1--AP2B1	2	0	IFFO1	6653	chr12:6657231:-	AP2B1	18893	chr17:33925249:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	IFFO1->chr12:6647541-6665239:-,intermediate_filament_family_orphan_1,AP2B1->adaptor_related_protein_complex_2_beta_1_subunit,chr17:33905065-34053436:+	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	JKAMP--PCNXL4	2	0	JKAMP	1151	chr14:59951311:+	PCNXL4	20900	chr14:60582437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	JKAMP->JNK1/MAPK8-associated_membrane_protein,chr14:59951161-59972128:+,PCNXL4->chr14:60558629-60635851:+	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	KANSL1--LRRC37A	1	4	KANSL1	7536	chr17:44248221:-	LRRC37A	37753	chr17:44377160:+	ONLY_REF_SPLICE	YES	58	16	0.08	0.24	0.0101	0.0403	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	HS746T_STOMACH	0.08	0.24	0.0504	TRUE	5	10	0	8	0	FALSE	ACH-000616
HS746T_STOMACH	LRRFIP1--FAM126A	2	0	LRRFIP1	25426	chr2:238668848:+	FAM126A	55100	chr7:22985782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,FAM126A->chr7:22980878-23053749:-,family_with_sequence_similarity_126_member_A	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	MET--CAV1	1	4	MET	4452	chr7:116340338:+	CAV1	33564	chr7:116199000:+	ONLY_REF_SPLICE	YES	5236	16249	0	0	0.0101	0.0403	{Klijn_CCL:Head-Neck=1},MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	HS746T_STOMACH	0	0	0.0504	FALSE	0	1	0	3	1	FALSE	ACH-000616
HS746T_STOMACH	MET--CAV1	1	4	MET	7346	chr7:116371913:+	CAV1	33564	chr7:116199000:+	ONLY_REF_SPLICE	YES	4640	16249	0	0	0.0101	0.0403	{Klijn_CCL:Head-Neck=1},MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	HS746T_STOMACH	0	0	0.0504	FALSE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	MTFR1L--UBE2I	2	0	MTFR1L	2337	chr1:26146520:+	UBE2I	20779	chr16:1362348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	MTFR1L->chr1:26145131-26159432:+,mitochondrial_fission_regulator_1_like,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HS746T_STOMACH	1	1	0.0201	TRUE	145	312	16	51	0	FALSE	ACH-000616
HS746T_STOMACH	NQO2--RPL17	2	0	NQO2	9651	chr6:3006793:+	RPL17	19776	chr18:47017954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+,RPL17->chr18:47014851-47018906:-,ribosomal_protein_L17	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	NRIP1--TIAM1	2	0	NRIP1	3459	chr21:16386665:-	TIAM1	22544	chr21:32639299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	PAPSS2--ANK3	2	0	PAPSS2	11954	chr10:89503398:+	ANK3	26720	chr10:62039397:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	PAPSS2->3'-phosphoadenosine_5'-phosphosulfate_synthase_2,chr10:89419370-89507462:+,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	PLA2G4B--POLDIP2	2	0	PLA2G4B	9498	chr15:42134789:+	POLDIP2	23043	chr17:26678826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	PLA2G4B->chr15:42120283-42140345:+,phospholipase_A2_group_IVB,POLDIP2->chr17:26673659-26684545:-,polymerase_(DNA)_delta_interacting_protein_2	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	PRPF40A--DYNLT1	2	0	PRPF40A	5065	chr2:153551056:-	DYNLT1	34120	chr6:159062392:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	PRPF40A->chr2:153508107-153574511:-,pre-mRNA_processing_factor_40_homolog_A,DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	RP11-66B24.2--RP11-464F9.1	2	0	RP11-66B24.2	3613	chr15:101395553:+	RP11-464F9.1	22388	chr10:75457478:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	RP11-66B24.2->chr15:101389766-101402376:+,RP11-464F9.1->chr10:75434053-75490272:-	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	SACM1L--KLC1	2	0	SACM1L	12787	chr3:45765035:+	KLC1	43827	chr14:104158696:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	SACM1L->SAC1_suppressor_of_actin_mutations_1-like_(yeast),chr3:45730548-45786916:+,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	SLK--PHF14	2	0	SLK	4396	chr10:105752891:+	PHF14	50022	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	SLK->STE20_like_kinase,chr10:105726959-105788991:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	SMYD3--SCCPDH	2	0	SMYD3	8315	chr1:246490503:-	SCCPDH	37086	chr1:246903474:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,SCCPDH->chr1:246887349-246931439:+,saccharopine_dehydrogenase_(putative)	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	STIL--ATPAF1	2	0	STIL	1112	chr1:47779708:-	ATPAF1	37261	chr1:47110928:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	STIL->Oncogene{Bushman},SCL/TAL1_interrupting_locus,chr1:47715811-47779819:-,ATPAF1->ATP_synthase_mitochondrial_F1_complex_assembly_factor_1,chr1:47098409-47139539:-	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	TRAF3IP2-AS1--TPRKB	2	0	TRAF3IP2-AS1	2351	chr6:111806064:+	TPRKB	18588	chr2:73959827:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	TRAF3IP2-AS1->TRAF3IP2_antisense_RNA_1,chr6:111804714-111919505:+,TPRKB->TP53RK_binding_protein,chr2:73956231-73964527:-	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	TSPAN13--VTI1A	2	0	TSPAN13	1496	chr7:16793655:+	VTI1A	19212	chr10:114286846:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	TSPAN13->chr7:16793160-16824161:+,tetraspanin_13,VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A	HS746T_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	AC002066.1--CAV1	1	3	AC002066.1	1112	chr7:116139408:-	CAV1	14768	chr7:116199000:+	ONLY_REF_SPLICE	YES	36	16249	0.1	0	0.0101	0.0302	LOCAL_INVERSION:-:+:[25320],AC002066.1->chr7:115878314-116139519:-,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	HS746T_STOMACH	0	0.1	0.0403	FALSE	0	0	1	6	0	FALSE	ACH-000616
HS746T_STOMACH	CTD-2337A12.1--CAST	1	3	CTD-2337A12.1	7488	chr5:95966789:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	72	1	0.05	0.0101	0.0302	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS746T_STOMACH	0.05	1	0.0403	TRUE	18	50	10	12	0	FALSE	ACH-000616
HS746T_STOMACH	NCOR2--UBC	1	3	NCOR2	2329	chr12:125020111:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	5	101	0.44	0.04	0.0101	0.0302	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HS746T_STOMACH	0.04	0.44	0.0403	TRUE	48	117	12	14	0	FALSE	ACH-000616
HS746T_STOMACH	NCOR2--UBC	1	3	NCOR2	21671	chr12:124882665:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	148	101	0.03	0.04	0.0101	0.0302	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HS746T_STOMACH	0.03	0.04	0.0403	TRUE	30	26	0	16	0	FALSE	ACH-000616
HS746T_STOMACH	NCOR2--UBC	1	3	NCOR2	16123	chr12:124911168:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	117	101	0.03	0.04	0.0101	0.0302	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HS746T_STOMACH	0.03	0.04	0.0403	TRUE	0	1	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	19658	chr21:16210144:-	ONLY_REF_SPLICE	YES	67	9	0.06	0.31	0.0101	0.0302	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS746T_STOMACH	0.06	0.31	0.0403	FALSE	0	2	1	3	0	FALSE	ACH-000616
HS746T_STOMACH	VTI1A--RP11-57H14.3	1	3	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	260	0	0.02	1	0.0101	0.0302	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HS746T_STOMACH	0.02	1	0.0403	FALSE	272	151	14	158	0	FALSE	ACH-000616
HS746T_STOMACH	AGO3--PPP6R3	1	2	AGO3	21579	chr1:36520746:+	PPP6R3	43045	chr11:68272613:+	ONLY_REF_SPLICE	NO	44	56	0.06	0.05	0.0101	0.0201	AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+,PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3	HS746T_STOMACH	0.05	0.06	0.0302	TRUE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	AGO3--PPP6R3	1	2	AGO3	20379	chr1:36509149:+	PPP6R3	43045	chr11:68272613:+	ONLY_REF_SPLICE	YES	85	56	0.03	0.05	0.0101	0.0201	AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+,PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3	HS746T_STOMACH	0.03	0.05	0.0302	TRUE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	CHST11--SYK	1	2	CHST11	2941	chr12:104851292:+	SYK	16838	chr9:93606140:+	ONLY_REF_SPLICE	YES	49	0	0.06	1	0.0101	0.0201	CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase	HS746T_STOMACH	0.06	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	KANSL1--LRRC37A	1	2	KANSL1	8599	chr17:44230270:-	LRRC37A	41698	chr17:44399688:+	ONLY_REF_SPLICE	YES	64	40	0.04	0.07	0.0101	0.0201	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	HS746T_STOMACH	0.04	0.07	0.0302	TRUE	2	2	0	6	0	FALSE	ACH-000616
HS746T_STOMACH	MANBA--UBE2D3	1	2	MANBA	9780	chr4:103610731:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	YES	53	553	0.05	0.01	0.0101	0.0201	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	HS746T_STOMACH	0.01	0.05	0.0302	FALSE	6	5	0	8	0	FALSE	ACH-000616
HS746T_STOMACH	PLXDC2--AC096559.1	1	2	PLXDC2	1953	chr10:20106120:+	AC096559.1	43392	chr2:12698332:+	ONLY_REF_SPLICE	YES	23	0	0.12	1	0.0101	0.0201	PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2,AC096559.1->chr2:11988748-12718474:+	HS746T_STOMACH	0.12	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	SLC30A7--UROC1	1	2	SLC30A7	7081	chr1:101383683:+	UROC1	35043	chr3:126214951:-	ONLY_REF_SPLICE	NO	66	0	0.04	1	0.0101	0.0201	{Klijn_CCL:Stomach=1},SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7,UROC1->chr3:126200124-126236616:-,urocanate_hydratase_1	HS746T_STOMACH	0.04	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000616
HS746T_STOMACH	ACTN1--RAD51B	1	1	ACTN1	1489	chr14:69445669:-	RAD51B	53488	chr14:68934889:+	ONLY_REF_SPLICE	YES	1343	29	0	0.06	0.0101	0.0101	ACTN1->actinin_alpha_1,chr14:69340860-69446157:-,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	HS746T_STOMACH	0	0.06	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	AGO3--PPP6R3	1	1	AGO3	21579	chr1:36520746:+	PPP6R3	45311	chr11:68286969:+	ONLY_REF_SPLICE	NO	44	99	0.04	0.02	0.0101	0.0101	AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+,PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3	HS746T_STOMACH	0.02	0.04	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	C3orf55--RSRC1	1	1	C3orf55	2375	chr3:157271129:+	RSRC1	18721	chr3:157839892:+	ONLY_REF_SPLICE	YES	101	57	0.02	0.03	0.0101	0.0101	C3orf55->chr3:157261035-157395538:+,RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+	HS746T_STOMACH	0.02	0.03	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	CAV1--MET	1	1	CAV1	2905	chr7:116166743:+	MET	18891	chr7:116395409:+	ONLY_REF_SPLICE	YES	16060	4119	0	0	0.0101	0.0101	CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HS746T_STOMACH	0	0	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	DDX10--ATM	1	1	DDX10	20214	chr11:108722936:+	ATM	91031	chr11:108199748:+	ONLY_REF_SPLICE	YES	120	140	0.02	0.01	0.0101	0.0101	DDX10->DEAD-box_helicase_10,Oncogene{Bushman},chr11:108535752-108811657:+,ATM->ATM_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:108093211-108239829:+	HS746T_STOMACH	0.01	0.02	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	DST--ZNF451	1	1	DST	1844	chr6:56818583:-	ZNF451	153461	chr6:57011888:+	ONLY_REF_SPLICE	YES	51	290	0.04	0.01	0.0101	0.0101	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451	HS746T_STOMACH	0.01	0.04	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	DST--ZNF451	1	1	DST	4600	chr6:56716195:-	ZNF451	153461	chr6:57011888:+	ONLY_REF_SPLICE	YES	75	290	0.03	0.01	0.0101	0.0101	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451	HS746T_STOMACH	0.01	0.03	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	LHFPL2--TBCA	1	1	LHFPL2	7033	chr5:77928087:-	TBCA	30719	chr5:76989177:-	ONLY_REF_SPLICE	NO	112	1015	0.02	0	0.0101	0.0101	LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	HS746T_STOMACH	0	0.02	0.0202	FALSE	0	0	0	2	0	FALSE	ACH-000616
HS746T_STOMACH	LYRM4--RPP40	1	1	LYRM4	4789	chr6:5216851:-	RPP40	24922	chr6:5002479:-	ONLY_REF_SPLICE	NO	316	114	0.01	0.02	0.0101	0.0101	NEIGHBORS[98530],LYRM4->LYR_motif_containing_4,chr6:5102827-5261172:-,RPP40->chr6:4994966-5004297:-,ribonuclease_P/MRP_subunit_p40	HS746T_STOMACH	0.01	0.02	0.0202	FALSE	0	3	0	5	0	FALSE	ACH-000616
HS746T_STOMACH	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	3	6	0.4	0.25	0.0101	0.0101	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS746T_STOMACH	0.25	0.4	0.0202	FALSE	25	145	6	90	0	FALSE	ACH-000616
HS746T_STOMACH	PBX3--MAPKAP1	1	1	PBX3	2279	chr9:128510902:+	MAPKAP1	33948	chr9:128322088:-	ONLY_REF_SPLICE	YES	506	1240	0	0	0.0101	0.0101	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	HS746T_STOMACH	0	0	0.0202	FALSE	0	0	0	4	0	FALSE	ACH-000616
HS746T_STOMACH	PBX3--MAPKAP1	1	1	PBX3	2279	chr9:128510902:+	MAPKAP1	31403	chr9:128348006:-	ONLY_REF_SPLICE	YES	506	1279	0	0	0.0101	0.0101	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	HS746T_STOMACH	0	0	0.0202	FALSE	0	2	0	5	0	FALSE	ACH-000616
HS746T_STOMACH	PICALM--SYTL2	1	1	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	1127	13	0	0.13	0.0101	0.0101	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	HS746T_STOMACH	0	0.13	0.0202	FALSE	4	2	0	20	0	FALSE	ACH-000616
HS746T_STOMACH	PRIM2--ZNF451	1	1	PRIM2	19427	chr6:57472441:+	ZNF451	49515	chr6:57011888:+	ONLY_REF_SPLICE	YES	370	290	0.01	0.01	0.0101	0.0101	PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2,ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451	HS746T_STOMACH	0.01	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	PRIM2--ZNF451	1	1	PRIM2	19427	chr6:57472441:+	ZNF451	57781	chr6:57033221:+	ONLY_REF_SPLICE	YES	370	283	0.01	0.01	0.0101	0.0101	PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2,ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451	HS746T_STOMACH	0.01	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	RP11-20I20.2--TACC3	1	1	RP11-20I20.2	1114	chr4:1107540:+	TACC3	11126	chr4:1732614:+	ONLY_REF_SPLICE	YES	1	515	0.67	0	0.0101	0.0101	RP11-20I20.2->chr4:1107427-1126765:+,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	HS746T_STOMACH	0	0.67	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	RP11-353N4.6--SEC22B	1	1	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	NO	74	850	0.03	0	0.0101	0.0101	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HS746T_STOMACH	0	0.03	0.0202	FALSE	33	36	9	21	0	FALSE	ACH-000616
HS746T_STOMACH	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0101	0.0101	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS746T_STOMACH	1	1	0.0202	TRUE	160	277	29	98	0	FALSE	ACH-000616
HS746T_STOMACH	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0101	0.0101	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS746T_STOMACH	1	1	0.0202	TRUE	13	17	1	13	0	FALSE	ACH-000616
HS746T_STOMACH	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	37	1	0.05	0.0101	0.0101	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS746T_STOMACH	0.05	1	0.0202	TRUE	64	13	3	59	0	FALSE	ACH-000616
HS746T_STOMACH	SNX29--GSPT1	1	1	SNX29	5452	chr16:12121301:+	GSPT1	43359	chr16:11991892:-	ONLY_REF_SPLICE	YES	54	183	0.04	0.01	0.0101	0.0101	GTEx_v2:{count=2;pct=0.02%;dist=Ovary=1,Brain_-_Spinal_cord_(cervical_c-1)=1},LOCAL_INVERSION:+:-:[60655],SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,GSPT1->G1_to_S_phase_transition_1,Oncogene{Bushman},chr16:11961985-12009939:-	HS746T_STOMACH	0.01	0.04	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000616
HS746T_STOMACH	TFG--TMEM45A	1	1	TFG	3935	chr3:100432713:+	TMEM45A	29377	chr3:100295769:+	ONLY_REF_SPLICE	NO	651	299	0	0.01	0.0101	0.0101	TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,TMEM45A->chr3:100211463-100296288:+,transmembrane_protein_45A	HS746T_STOMACH	0	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000616
KU1919_URINARY_TRACT	SMCO4--MS4A12	136	26	SMCO4	1233	chr11:93276442:-	MS4A12	15341	chr11:60274201:+	ONLY_REF_SPLICE	YES	3	0	0.98	1	2.0449	0.3909	SMCO4->chr11:93211638-93276674:-,single-pass_membrane_protein_with_coiled-coil_domains_4,MS4A12->chr11:60260251-60274903:+,membrane_spanning_4-domains_A12	KU1919_URINARY_TRACT	0.98	1	2.4358	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	TIMM23B--LINC00843	58	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8721	0.1654	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KU1919_URINARY_TRACT	0.99	1	1.0375	TRUE	508	994	45	981	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MKLN1-AS1--ABCA13	55	9	MKLN1-AS1	13605	chr7:130630479:-	ABCA13	85870	chr7:48559637:+	ONLY_REF_SPLICE	YES	3	3	0.96	0.96	0.827	0.1353	MKLN1-AS1->chr7:130626519-130794935:-,ABCA13->ATP_binding_cassette_subfamily_A_member_13,chr7:48211055-48687092:+	KU1919_URINARY_TRACT	0.96	0.96	0.9623	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	7	189	MT-ND4	1783	chrM:11542:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	9592	0	0.02	1	0.1053	2.8418	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.02	1	2.9471	FALSE	344	827	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-TA--MT-TC	50	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7518	0.0902	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KU1919_URINARY_TRACT	1	1	0.842	FALSE	462	80	0	856	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	4	183	MT-ND4	1246	chrM:11005:+	MT-ND4L	5422	chrM:10513:+	INCL_NON_REF_SPLICE	YES	76	0	0.71	1	0.0601	2.7516	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.71	1	2.8117	FALSE	344	827	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	4	183	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	41	0	0.82	1	0.0601	2.7516	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.82	1	2.8117	FALSE	344	826	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	3	183	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	39	0	0.83	1	0.0451	2.7516	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.83	1	2.7967	FALSE	344	826	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND6--MT-TE	48	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7217	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KU1919_URINARY_TRACT	1	1	0.7217	FALSE	499	1288	110	792	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	RP11-114H23.1--RP11-114H23.2	39	23	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	3	6	0.95	0.91	0.5864	0.3458	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	KU1919_URINARY_TRACT	0.91	0.95	0.9322	FALSE	81	155	12	160	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	10	131	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	2	0.97	0.99	0.1504	1.9697	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.97	0.99	2.1201	FALSE	344	821	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	TBC1D32--LINC00511	37	14	TBC1D32	27616	chr6:121484116:-	LINC00511	47546	chr17:70634989:-	ONLY_REF_SPLICE	YES	8	0	0.86	1	0.5563	0.2105	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	KU1919_URINARY_TRACT	0.86	1	0.7668	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	32	27	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1612	0	0.04	1	0.4812	0.406	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.04	1	0.8872	FALSE	344	827	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	4	133	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	13	0	0.91	1	0.0601	1.9998	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.91	1	2.0599	FALSE	344	826	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	26	43	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	15652	0	0	1	0.3909	0.6466	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0	1	1.0375	FALSE	328	800	43	304	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	4	130	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	117	0	0.53	1	0.0601	1.9547	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.53	1	2.0148	FALSE	344	827	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	TIMM23--RP11-464F9.1	36	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	128	6	0.22	0.86	0.5413	0.015	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KU1919_URINARY_TRACT	0.22	0.86	0.5563	TRUE	519	3926	326	965	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	4	125	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	144	0	0.47	1	0.0601	1.8795	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.47	1	1.9396	FALSE	344	827	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MCUR1--SRSF10	32	0	MCUR1	11892	chr6:13790712:-	SRSF10	27160	chr1:24296868:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4812	0	MCUR1->chr6:13786789-13814800:-,mitochondrial_calcium_uniporter_regulator_1,SRSF10->chr1:24291294-24307417:-,serine/arginine-rich_splicing_factor_10	KU1919_URINARY_TRACT	1	1	0.4812	TRUE	1	0	0	3	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-ND2	29	0	MT-ATP6	1221	chrM:8747:+	MT-ND2	5581	chrM:5369:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.436	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KU1919_URINARY_TRACT	1	1	0.436	FALSE	177	96	13	17	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	ZNF654--HMGB2	29	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.436	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KU1919_URINARY_TRACT	1	1	0.436	TRUE	0	0	0	518	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	PLXDC1--TAF13	24	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3609	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	KU1919_URINARY_TRACT	1	1	0.3609	TRUE	7	10	0	216	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	RP11-680G10.1--GSE1	23	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	12	1	0.68	0.3458	0.0451	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KU1919_URINARY_TRACT	0.68	1	0.3909	TRUE	465	1949	224	605	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	ARHGAP10--RP11-752L20.5	14	7	ARHGAP10	2624	chr4:148744108:+	RP11-752L20.5	37811	chr4:148493833:+	ONLY_REF_SPLICE	YES	26	0	0.45	1	0.2105	0.1053	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,RP11-752L20.5->chr4:148488758-148515739:+	KU1919_URINARY_TRACT	0.45	1	0.3158	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	TBC1D32--GPT2	15	2	TBC1D32	27616	chr6:121484116:-	GPT2	48644	chr16:46931560:+	ONLY_REF_SPLICE	YES	8	29	0.68	0.37	0.2255	0.0301	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,GPT2->chr16:46918290-46965209:+,glutamic_pyruvate_transaminase_(alanine_aminotransferase)_2	KU1919_URINARY_TRACT	0.37	0.68	0.2556	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	MT-ND6--MT-TE	14	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.2105	0.0752	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KU1919_URINARY_TRACT	0.9	1	0.2857	FALSE	499	1288	110	792	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	7	27	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1653	0	0.02	1	0.1053	0.406	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.02	1	0.5113	FALSE	344	827	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	RASSF3--COLEC12	13	3	RASSF3	1231	chr12:65004523:+	COLEC12	24138	chr18:320064:-	ONLY_REF_SPLICE	YES	5	0	0.76	1	0.1955	0.0451	RASSF3->Ras_association_domain_family_member_3,chr12:65004293-65091347:+,COLEC12->chr18:319361-500722:-,collectin_subfamily_member_12	KU1919_URINARY_TRACT	0.76	1	0.2406	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	3	42	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	107	0	0.3	1	0.0451	0.6315	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.3	1	0.6766	FALSE	344	827	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	3	42	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	40	0	0.53	1	0.0451	0.6315	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.53	1	0.6766	FALSE	344	826	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND6--MT-TE	13	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1955	0.015	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KU1919_URINARY_TRACT	1	1	0.2105	FALSE	499	1288	110	792	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	10	12	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	116	0	0.16	1	0.1504	0.1804	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.16	1	0.3308	FALSE	344	827	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	6	23	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	39	0	0.43	1	0.0902	0.3458	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.43	1	0.436	FALSE	344	826	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	5	27	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	51	0	0.39	1	0.0752	0.406	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.39	1	0.4812	FALSE	344	826	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	THOC1--RASSF3	10	6	THOC1	17988	chr18:223440:-	RASSF3	27362	chr12:65078567:+	ONLY_REF_SPLICE	YES	38	7	0.3	0.7	0.1504	0.0902	THOC1->THO_complex_1,chr18:214520-268050:-,RASSF3->Ras_association_domain_family_member_3,chr12:65004293-65091347:+	KU1919_URINARY_TRACT	0.3	0.7	0.2406	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-CO1	11	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	14203	34742	0	0	0.1654	0.015	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KU1919_URINARY_TRACT	0	0	0.1804	FALSE	183	104	9	328	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	3	33	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0451	0.4962	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.92	1	0.5413	FALSE	344	821	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	9	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.1353	0.1203	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KU1919_URINARY_TRACT	0.89	1	0.2556	FALSE	515	4851	409	746	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND6--MT-TE	9	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1353	0.1053	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KU1919_URINARY_TRACT	1	1	0.2406	FALSE	499	1288	110	792	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-CO1	10	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	17137	35243	0	0	0.1504	0.015	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KU1919_URINARY_TRACT	0	0	0.1654	FALSE	183	104	9	328	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	RP11-114H23.1--RP11-114H23.2	4	24	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	6	0.93	0.82	0.0601	0.3609	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	KU1919_URINARY_TRACT	0.82	0.93	0.421	FALSE	5	9	0	20	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	C15orf57--CBX3	8	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	30	28	0.33	0.35	0.1203	0.1053	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KU1919_URINARY_TRACT	0.33	0.35	0.2256	TRUE	267	562	48	632	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	RP11-680G10.1--GSE1	8	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.55	0.1203	0.0451	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KU1919_URINARY_TRACT	0.55	1	0.1654	TRUE	458	1351	185	561	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	RP11-123O10.4--GRIP1	8	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1203	0.0301	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KU1919_URINARY_TRACT	1	1	0.1504	FALSE	416	2512	207	587	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND6--MT-TE	6	7	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.0902	0.1053	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KU1919_URINARY_TRACT	0.87	1	0.1955	FALSE	499	1288	110	792	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	7	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.9	0.1053	0.0301	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.9	1	0.1354	FALSE	344	821	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-CO1	6	5	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4310	35644	0	0	0.0902	0.0752	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KU1919_URINARY_TRACT	0	0	0.1654	FALSE	183	104	9	328	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	4	12	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	56	0	0.22	1	0.0601	0.1804	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.22	1	0.2405	FALSE	344	827	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	4	12	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	40	0	0.29	1	0.0601	0.1804	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.29	1	0.2405	FALSE	344	826	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-CO1	6	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	14484	35387	0	0	0.0902	0.015	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KU1919_URINARY_TRACT	0	0	0.1052	FALSE	183	104	9	328	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0902	0.015	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KU1919_URINARY_TRACT	1	1	0.1052	FALSE	462	80	0	856	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-CO1	4	8	MT-ATP6	1477	chrM:9003:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	10834	31604	0	0	0.0601	0.1203	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KU1919_URINARY_TRACT	0	0	0.1804	FALSE	183	104	9	328	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	4	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0601	0.1203	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KU1919_URINARY_TRACT	0.92	1	0.1804	FALSE	467	2173	244	435	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	SHANK2--RPL26L1	6	0	SHANK2	30935	chr11:70544793:-	RPL26L1	63719	chr5:172386868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0902	0	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,RPL26L1->chr5:172385732-172396774:+,ribosomal_protein_L26_like_1	KU1919_URINARY_TRACT	1	1	0.0902	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	3	11	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	1	1	0.93	0.93	0.0451	0.1654	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.93	0.93	0.2105	FALSE	344	821	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND6--MT-TE	3	11	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0.1654	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KU1919_URINARY_TRACT	1	1	0.2105	FALSE	499	1288	110	792	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-TA--MT-TC	4	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0601	0.0902	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KU1919_URINARY_TRACT	1	1	0.1503	FALSE	462	80	0	856	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MKLN1-AS1--ABCA13	4	5	MKLN1-AS1	13605	chr7:130630479:-	ABCA13	85940	chr7:48559707:+	INCL_NON_REF_SPLICE	YES	3	3	0.75	0.75	0.0601	0.0752	MKLN1-AS1->chr7:130626519-130794935:-,ABCA13->ATP_binding_cassette_subfamily_A_member_13,chr7:48211055-48687092:+	KU1919_URINARY_TRACT	0.75	0.75	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-CO1	5	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	13350	32633	0	0	0.0752	0.015	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KU1919_URINARY_TRACT	0	0	0.0902	FALSE	183	104	9	328	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-CO1	5	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	4992	chrM:6214:+	INCL_NON_REF_SPLICE	NO	17137	27697	0	0	0.0752	0.015	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KU1919_URINARY_TRACT	0	0	0.0902	FALSE	183	104	9	328	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	SIRT3--SIGIRR	3	7	SIRT3	5161	chr11:230452:-	SIGIRR	18301	chr11:410027:-	ONLY_REF_SPLICE	YES	14	26	0.42	0.28	0.0451	0.1053	SIRT3->chr11:215458-236931:-,sirtuin_3,SIGIRR->chr11:405716-417455:-,single_immunoglobulin_and_toll-interleukin_1_receptor_(TIR)_domain	KU1919_URINARY_TRACT	0.28	0.42	0.1504	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	SLC9A7--CXorf31	4	2	SLC9A7	1351	chrX:46618140:-	CXorf31	23411	chrX:46754016:-	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.0601	0.0301	SLC9A7->chrX:46464753-46618490:-,solute_carrier_family_9_member_A7,CXorf31->chrX:46746852-46759138:-	KU1919_URINARY_TRACT	0.3	1	0.0902	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-CO1	3	5	MT-ATP6	1199	chrM:8725:+	MT-CO1	4987	chrM:6209:+	INCL_NON_REF_SPLICE	NO	19715	27878	0	0	0.0451	0.0752	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KU1919_URINARY_TRACT	0	0	0.1203	FALSE	183	104	9	328	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-CO1	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13833	35243	0	0	0.0601	0.015	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KU1919_URINARY_TRACT	0	0	0.0751	FALSE	183	104	9	328	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	14386	32180	0	0	0.0601	0.015	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KU1919_URINARY_TRACT	0	0	0.0751	FALSE	183	104	9	328	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-CO1	3	5	MT-ATP6	1297	chrM:8823:+	MT-CO1	5190	chrM:6412:+	INCL_NON_REF_SPLICE	YES	22026	32392	0	0	0.0451	0.0752	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KU1919_URINARY_TRACT	0	0	0.1203	FALSE	183	104	9	328	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	14386	35243	0	0	0.0601	0.015	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KU1919_URINARY_TRACT	0	0	0.0751	FALSE	183	104	9	328	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	FOSL1--DRAP1	4	0	FOSL1	1333	chr11:65667712:-	DRAP1	9128	chr11:65687251:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0601	0	LOCAL_INVERSION:-:+:[18684],FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	KU1919_URINARY_TRACT	1	1	0.0601	TRUE	0	0	0	6	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0601	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KU1919_URINARY_TRACT	1	1	0.0601	FALSE	499	1288	110	792	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.015	0.1804	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KU1919_URINARY_TRACT	0.87	1	0.1954	FALSE	275	511	55	178	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	3	3	MT-ND4	1031	chrM:10790:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0451	0.0451	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.86	1	0.0902	FALSE	344	821	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.015	0.1654	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KU1919_URINARY_TRACT	0.86	1	0.1804	FALSE	407	2205	196	549	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	CPT1A--TPCN2	3	2	CPT1A	18162	chr11:68548108:-	TPCN2	33909	chr11:68822189:+	ONLY_REF_SPLICE	YES	149	126	0.03	0.04	0.0451	0.0301	CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-,TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2	KU1919_URINARY_TRACT	0.03	0.04	0.0752	TRUE	0	0	0	1	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	SLC9A7--CXorf31	3	2	SLC9A7	1351	chrX:46618140:-	CXorf31	24469	chrX:46749814:-	ONLY_REF_SPLICE	NO	14	0	0.26	1	0.0451	0.0301	SLC9A7->chrX:46464753-46618490:-,solute_carrier_family_9_member_A7,CXorf31->chrX:46746852-46759138:-	KU1919_URINARY_TRACT	0.26	1	0.0752	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	CALM3--MT-ND4L	3	1	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1106	0	0	1	0.0451	0.015	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0	1	0.0601	FALSE	1	1	0	107	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	17137	0	0	1	0.0451	0.015	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KU1919_URINARY_TRACT	0	1	0.0601	FALSE	182	97	9	327	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-CO1	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	13833	32918	0	0	0.0451	0.015	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KU1919_URINARY_TRACT	0	0	0.0601	FALSE	183	104	9	328	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	3	1	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0451	0.015	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.8	1	0.0601	FALSE	344	821	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND4--MT-ND4L	3	1	MT-ND4	1056	chrM:10815:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	NO	3	0	0.57	1	0.0451	0.015	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KU1919_URINARY_TRACT	0.57	1	0.0601	FALSE	344	821	44	306	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	15	0.67	0.21	0.0451	0.015	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KU1919_URINARY_TRACT	0.21	0.67	0.0601	FALSE	16	356	14	466	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-ND2	3	0	MT-ATP6	1123	chrM:8649:+	MT-ND2	5567	chrM:5355:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KU1919_URINARY_TRACT	1	1	0.0451	FALSE	177	96	13	17	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-ND2	3	0	MT-ATP6	1082	chrM:8608:+	MT-ND2	5507	chrM:5295:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KU1919_URINARY_TRACT	1	1	0.0451	FALSE	177	96	13	17	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ATP6--MT-ND2	3	0	MT-ATP6	1098	chrM:8624:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KU1919_URINARY_TRACT	1	1	0.0451	FALSE	177	96	13	17	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KU1919_URINARY_TRACT	1	1	0.0451	FALSE	499	1288	110	792	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	RPSAP52--HMGA2	3	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0451	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	KU1919_URINARY_TRACT	1	1	0.0451	FALSE	0	59	0	125	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	CPT1A--TPCN2	2	1	CPT1A	18162	chr11:68548108:-	TPCN2	35541	chr11:68825046:+	ONLY_REF_SPLICE	YES	149	146	0.02	0.02	0.0301	0.015	CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-,TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2	KU1919_URINARY_TRACT	0.02	0.02	0.0451	TRUE	0	0	0	1	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	ARSG--PPA2	2	0	ARSG	18733	chr17:66397591:+	PPA2	38439	chr4:106320321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	ARSG->arylsulfatase_G,chr17:66255323-66418872:+,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	KU1919_URINARY_TRACT	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	ATXN1--EIF4A2	2	0	ATXN1	15061	chr6:16522858:-	EIF4A2	38500	chr3:186506099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	ATXN1->ataxin_1,chr6:16299343-16761722:-,EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2	KU1919_URINARY_TRACT	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	CHSY1--SDCCAG8	2	0	CHSY1	4362	chr15:101775287:-	SDCCAG8	20567	chr1:243449574:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	CHSY1->chondroitin_sulfate_synthase_1,chr15:101715928-101792137:-,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	KU1919_URINARY_TRACT	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	CYB5RL--YPEL3	2	0	CYB5RL	4286	chr1:54656421:-	YPEL3	22367	chr16:30104120:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	CYB5RL->chr1:54638009-54665709:-,cytochrome_b5_reductase_like,YPEL3->chr16:30103635-30108236:-,yippee_like_3	KU1919_URINARY_TRACT	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	MBD2--CTD-2171N6.1	2	0	MBD2	1771	chr18:51750388:-	CTD-2171N6.1	19159	chr18:52784314:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2,CTD-2171N6.1->chr18:52773135-52791537:-	KU1919_URINARY_TRACT	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	RCC1--RHOA	2	0	RCC1	2175	chr1:28834672:+	RHOA	22152	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	KU1919_URINARY_TRACT	1	1	0.0301	TRUE	0	1	0	6	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	SEPT9--ADAT1	2	0	SEPT9	1986	chr17:75277636:+	ADAT1	47076	chr16:75656362:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,ADAT1->adenosine_deaminase,_tRNA_specific_1,chr16:75630879-75657198:-	KU1919_URINARY_TRACT	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KU1919_URINARY_TRACT	1	1	0.0301	TRUE	5	8	0	33	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	MKLN1-AS1--ABCA13	1	3	MKLN1-AS1	11360	chr7:130668812:-	ABCA13	85870	chr7:48559637:+	ONLY_REF_SPLICE	YES	3	3	0.57	0.57	0.015	0.0451	MKLN1-AS1->chr7:130626519-130794935:-,ABCA13->ATP_binding_cassette_subfamily_A_member_13,chr7:48211055-48687092:+	KU1919_URINARY_TRACT	0.57	0.57	0.0601	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	CPT1A--TPCN2	1	2	CPT1A	18162	chr11:68548108:-	TPCN2	34363	chr11:68822643:+	ONLY_REF_SPLICE	NO	149	121	0.02	0.02	0.015	0.0301	CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-,TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2	KU1919_URINARY_TRACT	0.02	0.02	0.0451	TRUE	0	0	0	1	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	PDGFB--SCUBE1	1	2	PDGFB	5199	chr22:39631783:-	SCUBE1	39576	chr22:43608598:-	ONLY_REF_SPLICE	NO	5	5	0.38	0.38	0.015	0.0301	PDGFB->Oncogene{Bushman},chr22:39619364-39640756:-,platelet_derived_growth_factor_subunit_B,SCUBE1->chr22:43593289-43739394:-,signal_peptide,_CUB_domain_and_EGF_like_domain_containing_1	KU1919_URINARY_TRACT	0.38	0.38	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	PNPLA3--KIAA1644	1	2	PNPLA3	3895	chr22:44324769:+	KIAA1644	18948	chr22:44696857:-	ONLY_REF_SPLICE	NO	8	0	0.27	1	0.015	0.0301	PNPLA3->chr22:44319619-44360368:+,patatin_like_phospholipase_domain_containing_3,KIAA1644->KIAA1644,chr22:44639547-44708731:-	KU1919_URINARY_TRACT	0.27	1	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000486
KU1919_URINARY_TRACT	C19orf25--DAZAP1	1	1	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	29	164	0.06	0.01	0.015	0.015	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	KU1919_URINARY_TRACT	0.01	0.06	0.03	FALSE	6	7	1	24	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	PHF20L1--CHMP1A	1	1	PHF20L1	6402	chr8:133811418:+	CHMP1A	44993	chr16:89713739:-	ONLY_REF_SPLICE	YES	51	314	0.04	0.01	0.015	0.015	GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Lung=1,Thyroid=1,Whole_Blood=1},PHF20L1->PHD_finger_protein_20-like_1,chr8:133787618-133861052:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	KU1919_URINARY_TRACT	0.01	0.04	0.03	FALSE	1	0	0	1	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	2	3	0.5	0.4	0.015	0.015	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KU1919_URINARY_TRACT	0.4	0.5	0.03	FALSE	0	23	1	67	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	RP11-634B7.4--TRIM58	1	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.015	0.015	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	KU1919_URINARY_TRACT	1	1	0.03	TRUE	158	633	76	73	0	FALSE	ACH-000486
KU1919_URINARY_TRACT	ZDHHC17--CSRP2	1	1	ZDHHC17	3354	chr12:77162981:+	CSRP2	33980	chr12:77260041:-	ONLY_REF_SPLICE	YES	12	2	0.14	0.5	0.015	0.015	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_INVERSION:+:-:[5019],ZDHHC17->chr12:77157368-77247476:+,zinc_finger_DHHC-type_containing_17,CSRP2->chr12:77252495-77272840:-,cysteine_and_glycine_rich_protein_2	KU1919_URINARY_TRACT	0.14	0.5	0.03	TRUE	0	0	0	1	0	TRUE	ACH-000486
NCIH1155_LUNG	TIMM23B--LINC00843	211	54	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	2.1069	0.5392	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1155_LUNG	1	1	2.6461	TRUE	508	994	45	981	0	FALSE	ACH-000980
NCIH1155_LUNG	OR51S1--TP53I11	159	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5877	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH1155_LUNG	1	1	1.5877	TRUE	402	216	10	229	0	FALSE	ACH-000980
NCIH1155_LUNG	TIMM23--RP11-464F9.1	123	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	245	7	0.34	0.95	1.2282	0.0499	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1155_LUNG	0.34	0.95	1.2781	TRUE	519	3926	326	965	0	FALSE	ACH-000980
NCIH1155_LUNG	RP11-408A13.2--NFIB	62	13	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	27	1	0.74	0.6191	0.1298	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	NCIH1155_LUNG	0.74	1	0.7489	TRUE	0	14	0	20	14	FALSE	ACH-000980
NCIH1155_LUNG	ZNF654--HMGB2	57	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5692	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1155_LUNG	1	1	0.5692	TRUE	0	0	0	518	0	FALSE	ACH-000980
NCIH1155_LUNG	RP11-680G10.1--GSE1	46	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	1	8	0.98	0.87	0.4593	0.0899	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1155_LUNG	0.87	0.98	0.5492	TRUE	458	1351	185	561	0	FALSE	ACH-000980
NCIH1155_LUNG	AP000525.9--LA16c-60G3.6	26	4	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	7	0	0.81	1	0.2596	0.0399	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH1155_LUNG	0.81	1	0.2995	TRUE	0	42	0	133	42	FALSE	ACH-000980
NCIH1155_LUNG	RP11-680G10.1--GSE1	26	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	1	105	0.97	0.22	0.2596	0.0399	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1155_LUNG	0.22	0.97	0.2995	TRUE	465	1949	224	605	0	FALSE	ACH-000980
NCIH1155_LUNG	NPM1P24--SET	26	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	23	800	0.54	0.03	0.2596	0.01	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1155_LUNG	0.03	0.54	0.2696	TRUE	0	0	0	434	0	FALSE	ACH-000980
NCIH1155_LUNG	AL589743.1--RP11-536C10.17	24	4	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	7	0	0.8	1	0.2397	0.0399	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	NCIH1155_LUNG	0.8	1	0.2796	TRUE	0	33	0	45	33	FALSE	ACH-000980
NCIH1155_LUNG	NIPA2--POLA1	23	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2297	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	NCIH1155_LUNG	1	1	0.2297	TRUE	46	1352	75	139	0	FALSE	ACH-000980
NCIH1155_LUNG	NPM1P24--SET	22	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	23	928	0.5	0.02	0.2197	0.01	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1155_LUNG	0.02	0.5	0.2297	TRUE	0	0	0	434	0	FALSE	ACH-000980
NCIH1155_LUNG	NPM1P24--SET	9	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	NO	23	1022	0.3	0.01	0.0899	0.01	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1155_LUNG	0.01	0.3	0.0999	FALSE	0	0	0	434	0	FALSE	ACH-000980
NCIH1155_LUNG	RP11-123O10.4--GRIP1	9	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0899	0.01	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1155_LUNG	1	1	0.0999	FALSE	416	2512	207	587	0	FALSE	ACH-000980
NCIH1155_LUNG	AL589743.1--RP11-536C10.17	4	4	AL589743.1	9393	chr14:19680685:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	118	0	0.06	1	0.0399	0.0399	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	NCIH1155_LUNG	0.06	1	0.0798	TRUE	0	8	0	6	8	TRUE	ACH-000980
NCIH1155_LUNG	AP000525.9--LA16c-60G3.6	4	4	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	44	0	0.15	1	0.0399	0.0399	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH1155_LUNG	0.15	1	0.0798	TRUE	0	8	0	10	8	TRUE	ACH-000980
NCIH1155_LUNG	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1155_LUNG	1	1	0.0399	FALSE	292	1546	117	613	0	FALSE	ACH-000980
NCIH1155_LUNG	TMLHE--CMC4	4	0	TMLHE	2332	chrX:154842453:-	CMC4	18768	chrX:154292308:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,CMC4->C-x(9)-C_motif_containing_4,chrX:154289897-154299637:-	NCIH1155_LUNG	1	1	0.0399	TRUE	1	2	0	1	0	TRUE	ACH-000980
NCIH1155_LUNG	JSRP1--RPS28	3	2	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.03	0.02	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH1155_LUNG	1	1	0.05	TRUE	0	1	0	84	1	FALSE	ACH-000980
NCIH1155_LUNG	JSRP1--RPS28	3	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.03	0.02	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH1155_LUNG	1	1	0.05	TRUE	0	1	0	84	1	FALSE	ACH-000980
NCIH1155_LUNG	SF1--FUS	3	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	241	668	0.02	0.01	0.03	0.01	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH1155_LUNG	0.01	0.02	0.04	FALSE	5	20	0	32	0	FALSE	ACH-000980
NCIH1155_LUNG	FTH1--ACTB	3	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.03	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH1155_LUNG	1	1	0.03	TRUE	1	0	0	97	0	FALSE	ACH-000980
NCIH1155_LUNG	FTH1--ACTB	3	0	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.03	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH1155_LUNG	1	1	0.03	TRUE	1	0	0	97	0	FALSE	ACH-000980
NCIH1155_LUNG	RP11-120D5.1--MID1	3	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.03	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1155_LUNG	1	1	0.03	FALSE	16	356	14	466	0	FALSE	ACH-000980
NCIH1155_LUNG	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0.01	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1155_LUNG	1	1	0.03	FALSE	93	270	15	244	0	FALSE	ACH-000980
NCIH1155_LUNG	DNAJC24--IMMP1L	2	0	DNAJC24	2020	chr11:31392406:+	IMMP1L	34941	chr11:31455117:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Nerve_-_Tibial=2,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Pancreas=1},LOCAL_INVERSION:+:-:[552],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	NCIH1155_LUNG	1	1	0.02	TRUE	0	4	0	9	1	TRUE	ACH-000980
NCIH1155_LUNG	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH1155_LUNG	1	1	0.02	TRUE	0	9	0	44	1	FALSE	ACH-000980
NCIH1155_LUNG	EXD3--RABL6	2	0	EXD3	1149	chr9:140317566:-	RABL6	36936	chr9:139717977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+	NCIH1155_LUNG	1	1	0.02	TRUE	1	0	0	3	0	TRUE	ACH-000980
NCIH1155_LUNG	HNRNPA2B1--NDUFS6	2	0	HNRNPA2B1	1958	chr7:26240192:-	NDUFS6	16562	chr5:1814453:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,NDUFS6->NADH:ubiquinone_oxidoreductase_subunit_S6,chr5:1801514-1816719:+	NCIH1155_LUNG	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000980
NCIH1155_LUNG	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH1155_LUNG	1	1	0.02	TRUE	145	312	16	51	0	FALSE	ACH-000980
NCIH1155_LUNG	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1155_LUNG	1	1	0.02	FALSE	125	705	46	456	0	FALSE	ACH-000980
NCIH1155_LUNG	PPP1R12C--TNK2	2	0	PPP1R12C	8950	chr19:55610152:-	TNK2	27085	chr3:195615477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6]},GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Whole_Blood=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,TNK2->chr3:195590235-195638816:-,tyrosine_kinase_non_receptor_2	NCIH1155_LUNG	1	1	0.02	TRUE	2	0	0	2	0	FALSE	ACH-000980
NCIH1155_LUNG	VWDE--PHF14	2	0	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1155_LUNG	1	1	0.02	TRUE	0	6	0	17	2	TRUE	ACH-000980
NCIH1155_LUNG	ADSS--SCCPDH	1	1	ADSS	3444	chr1:244600127:-	SCCPDH	23485	chr1:246907378:+	ONLY_REF_SPLICE	YES	79	91	0.02	0.02	0.01	0.01	ADSS->adenylosuccinate_synthase,chr1:244571796-244615436:-,SCCPDH->chr1:246887349-246931439:+,saccharopine_dehydrogenase_(putative)	NCIH1155_LUNG	0.02	0.02	0.02	TRUE	0	0	0	1	0	FALSE	ACH-000980
NCIH1155_LUNG	CDKN3--KTN1	1	1	CDKN3	3373	chr14:54868297:+	KTN1	18771	chr14:56078737:+	ONLY_REF_SPLICE	YES	294	34	0.01	0.06	0.01	0.01	CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3,KTN1->Oncogene{Bushman},chr14:56025790-56168244:+,kinectin_1	NCIH1155_LUNG	0.01	0.06	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000980
NCIH1155_LUNG	EBF3--ATP6AP2	1	1	EBF3	4814	chr10:131755522:-	ATP6AP2	22778	chrX:40448238:+	ONLY_REF_SPLICE	NO	97	331	0.02	0.01	0.01	0.01	EBF3->chr10:131633547-131762105:-,early_B-cell_factor_3,ATP6AP2->ATPase_H+_transporting_accessory_protein_2,chrX:40440146-40465889:+	NCIH1155_LUNG	0.01	0.02	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000980
NCIH1155_LUNG	HS2ST1--SEP15	1	1	HS2ST1	1513	chr1:87380843:+	SEP15	26013	chr1:87369131:-	ONLY_REF_SPLICE	YES	70	41	0.03	0.05	0.01	0.01	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	NCIH1155_LUNG	0.03	0.05	0.02	TRUE	0	2	0	9	0	FALSE	ACH-000980
NCIH1155_LUNG	LINC00299--AC007464.1	1	1	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.01	0.01	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	NCIH1155_LUNG	0.67	1	0.02	TRUE	67	49	0	25	0	FALSE	ACH-000980
NCIH1155_LUNG	LINC00299--AC007464.1	1	1	LINC00299	17125	chr2:8200478:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.01	0.01	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	NCIH1155_LUNG	1	1	0.02	TRUE	20	19	0	15	0	FALSE	ACH-000980
NCIH1155_LUNG	NDUFA4--PHF14	1	1	NDUFA4	1241	chr7:10979643:-	PHF14	12995	chr7:11030330:+	ONLY_REF_SPLICE	YES	1170	222	0	0.01	0.01	0.01	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1155_LUNG	0	0.01	0.02	FALSE	1	0	0	3	0	FALSE	ACH-000980
NCIH1155_LUNG	NDUFA4--PHF14	1	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	NO	1170	127	0	0.02	0.01	0.01	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1155_LUNG	0	0.02	0.02	FALSE	19	32	3	60	0	FALSE	ACH-000980
NCIH1155_LUNG	RALGAPA2--XRN2	1	1	RALGAPA2	3278	chr20:20656880:-	XRN2	55011	chr20:21306917:+	ONLY_REF_SPLICE	YES	14	261	0.12	0.01	0.01	0.01	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood=[count:2=pct:1.1],Lung=[count:1=pct:0.6]},GTEx_v2:{count=7;pct=0.08%;dist=Thyroid=2,Skin_-_Sun_Exposed_(Lower_leg)=2,Whole_Blood=2,Breast_-_Mammary_Tissue=1},RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-,XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+	NCIH1155_LUNG	0.01	0.12	0.02	FALSE	0	0	0	2	0	FALSE	ACH-000980
NCIH1155_LUNG	RPS20--GNAS	1	1	RPS20	1451	chr8:56986619:-	GNAS	24768	chr20:57470667:+	ONLY_REF_SPLICE	YES	2411	687	0	0	0.01	0.01	RPS20->chr8:56979854-56987069:-,ribosomal_protein_S20,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1155_LUNG	0	0	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000980
NCIH1155_LUNG	SNX2--RBM27	1	1	SNX2	1216	chr5:122110906:+	RBM27	23258	chr5:145608509:+	ONLY_REF_SPLICE	YES	133	32	0.01	0.06	0.01	0.01	SNX2->chr5:122110691-122165803:+,sorting_nexin_2,RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+	NCIH1155_LUNG	0.01	0.06	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000980
769P_KIDNEY	IGSF3--GGT1	92	29	IGSF3	13001	chr1:117131316:-	GGT1	26899	chr22:25003921:+	ONLY_REF_SPLICE	YES	47	180	0.72	0.4	1.1243	0.3544	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	769P_KIDNEY	0.4	0.72	1.4787	TRUE	1	1	0	8	1	TRUE	ACH-000411
769P_KIDNEY	TIMM23B--LINC00843	90	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0999	0.1467	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	769P_KIDNEY	1	1	1.2466	TRUE	508	994	45	981	0	FALSE	ACH-000411
769P_KIDNEY	RNF115--TRNAU1AP	78	18	RNF115	1306	chr1:145611341:+	TRNAU1AP	29338	chr1:28897688:+	ONLY_REF_SPLICE	YES	12	29	0.89	0.77	0.9533	0.22	{Klijn_CCL:Kidney=1},RNF115->chr1:145611036-145696218:+,ring_finger_protein_115,TRNAU1AP->chr1:28879597-28905051:+,tRNA_selenocysteine_1_associated_protein_1	769P_KIDNEY	0.77	0.89	1.1733	TRUE	0	0	0	1	0	TRUE	ACH-000411
769P_KIDNEY	TIMM23--RP11-464F9.1	54	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	319	5	0.15	0.92	0.6599	0.0367	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	769P_KIDNEY	0.15	0.92	0.6966	TRUE	519	3926	326	965	0	FALSE	ACH-000411
769P_KIDNEY	MT-ND4--MT-ND4L	3	150	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	17	0	0.9	1	0.0367	1.8332	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	769P_KIDNEY	0.9	1	1.8699	FALSE	344	826	44	306	0	FALSE	ACH-000411
769P_KIDNEY	MT-TA--MT-TC	29	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3544	0.0855	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	769P_KIDNEY	1	1	0.4399	FALSE	462	80	0	856	0	FALSE	ACH-000411
769P_KIDNEY	HSP90AB1--MT-RNR2	25	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3351	0	0.01	1	0.3055	0.0244	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	769P_KIDNEY	0.01	1	0.3299	FALSE	13	9	0	364	0	FALSE	ACH-000411
769P_KIDNEY	ZNF654--HMGB2	25	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3055	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	769P_KIDNEY	1	1	0.3055	TRUE	0	0	0	518	0	FALSE	ACH-000411
769P_KIDNEY	MT-ND6--MT-TE	23	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2811	0.0122	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	769P_KIDNEY	1	1	0.2933	FALSE	499	1288	110	792	0	FALSE	ACH-000411
769P_KIDNEY	RNF115--TRNAU1AP	22	5	RNF115	1306	chr1:145611341:+	TRNAU1AP	30029	chr1:28898379:+	ONLY_REF_SPLICE	YES	12	38	0.69	0.42	0.2689	0.0611	{Klijn_CCL:Kidney=1},RNF115->chr1:145611036-145696218:+,ring_finger_protein_115,TRNAU1AP->chr1:28879597-28905051:+,tRNA_selenocysteine_1_associated_protein_1	769P_KIDNEY	0.42	0.69	0.33	TRUE	0	0	0	1	0	TRUE	ACH-000411
769P_KIDNEY	HSP90AB1--MT-RNR2	17	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3373	0	0.01	1	0.2078	0.0244	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	769P_KIDNEY	0.01	1	0.2322	FALSE	13	9	0	364	0	FALSE	ACH-000411
769P_KIDNEY	IGSF3--GGT1	9	27	IGSF3	13000	chr1:117131317:-	GGT1	26901	chr22:25003923:+	INCL_NON_REF_SPLICE	YES	47	179	0.43	0.17	0.11	0.33	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	769P_KIDNEY	0.17	0.43	0.44	TRUE	1	1	0	8	1	TRUE	ACH-000411
769P_KIDNEY	MT-ND6--MT-TE	15	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1833	0.0122	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	769P_KIDNEY	1	1	0.1955	FALSE	499	1288	110	792	0	FALSE	ACH-000411
769P_KIDNEY	MT-ND4--MT-ND4L	8	23	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	886	0	0.03	1	0.0978	0.2811	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	769P_KIDNEY	0.03	1	0.3789	FALSE	344	827	44	306	0	FALSE	ACH-000411
769P_KIDNEY	MT-ND4--MT-ND4L	5	34	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	25	0	0.61	1	0.0611	0.4155	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	769P_KIDNEY	0.61	1	0.4766	FALSE	344	826	44	306	0	FALSE	ACH-000411
769P_KIDNEY	MT-ND4--MT-ND4L	5	34	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	794	0	0.05	1	0.0611	0.4155	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	769P_KIDNEY	0.05	1	0.4766	FALSE	344	827	44	306	0	FALSE	ACH-000411
769P_KIDNEY	C15orf57--CBX3	8	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	45	43	0.27	0.28	0.0978	0.11	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	769P_KIDNEY	0.27	0.28	0.2078	TRUE	267	562	48	632	0	FALSE	ACH-000411
769P_KIDNEY	MT-CO3--MT-ATP6	3	27	MT-CO3	1220	chrM:9426:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	4	0.88	0.88	0.0367	0.33	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	769P_KIDNEY	0.88	0.88	0.3667	FALSE	189	492	56	216	0	FALSE	ACH-000411
769P_KIDNEY	RP11-123O10.4--GRIP1	9	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.11	0.0367	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	769P_KIDNEY	1	1	0.1467	FALSE	416	2512	207	587	0	FALSE	ACH-000411
769P_KIDNEY	MT-CO3--MT-ATP6	3	23	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.96	0.0367	0.2811	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	769P_KIDNEY	0.96	1	0.3178	FALSE	189	492	56	216	0	FALSE	ACH-000411
769P_KIDNEY	MT-ND4--MT-ND4L	3	21	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	27	0	0.47	1	0.0367	0.2566	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	769P_KIDNEY	0.47	1	0.2933	FALSE	344	826	44	306	0	FALSE	ACH-000411
769P_KIDNEY	MT-ND6--MT-TE	4	15	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0489	0.1833	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	769P_KIDNEY	0.95	1	0.2322	FALSE	499	1288	110	792	0	FALSE	ACH-000411
769P_KIDNEY	MT-ND6--MT-TE	4	14	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0489	0.1711	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	769P_KIDNEY	0.95	1	0.22	FALSE	499	1288	110	792	0	FALSE	ACH-000411
769P_KIDNEY	CCND1--MT-ND1	7	1	CCND1	1290	chr11:69456144:+	MT-ND1	12240	chrM:3322:+	INCL_NON_REF_SPLICE	YES	938	0	0.01	1	0.0855	0.0122	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	769P_KIDNEY	0.01	1	0.0977	FALSE	0	0	0	5	0	FALSE	ACH-000411
769P_KIDNEY	MT-TA--MT-TC	5	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0.0978	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	769P_KIDNEY	1	1	0.1589	FALSE	462	80	0	856	0	FALSE	ACH-000411
769P_KIDNEY	TAGLN2--MT-ND5	7	0	TAGLN2	6046	chr1:159888579:-	MT-ND5	10456	chrM:13064:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0855	0	TAGLN2->chr1:159887897-159895522:-,transgelin_2,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	769P_KIDNEY	1	1	0.0855	FALSE	0	0	0	9	0	FALSE	ACH-000411
769P_KIDNEY	MT-ND6--MT-TE	4	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0.1222	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	769P_KIDNEY	1	1	0.1711	FALSE	499	1288	110	792	0	FALSE	ACH-000411
769P_KIDNEY	AC002066.1--AC073130.1	6	1	AC002066.1	3291	chr7:116105243:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0733	0.0122	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	769P_KIDNEY	0.7	1	0.0855	FALSE	0	0	0	2	0	FALSE	ACH-000411
769P_KIDNEY	C15orf57--CBX3	5	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	42	46	0.18	0.16	0.0611	0.0489	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	769P_KIDNEY	0.16	0.18	0.11	TRUE	267	562	48	632	0	FALSE	ACH-000411
769P_KIDNEY	MT-TA--MT-TC	5	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0.0122	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	769P_KIDNEY	1	1	0.0733	FALSE	462	80	0	856	0	FALSE	ACH-000411
769P_KIDNEY	RP11-96H19.1--RP11-446N19.1	5	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0611	0.0122	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	769P_KIDNEY	1	1	0.0733	FALSE	515	4851	409	746	0	FALSE	ACH-000411
769P_KIDNEY	MT-ATP6--MT-CO1	5	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	769P_KIDNEY	1	1	0.0611	FALSE	183	104	9	328	0	FALSE	ACH-000411
769P_KIDNEY	MT-ATP6--MT-CO1	5	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	769P_KIDNEY	1	1	0.0611	FALSE	183	104	9	328	0	FALSE	ACH-000411
769P_KIDNEY	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	769P_KIDNEY	1	1	0.0611	FALSE	0	0	0	189	0	FALSE	ACH-000411
769P_KIDNEY	SPP1--MT-ATP6	5	0	SPP1	6793	chr4:88903711:+	MT-ATP6	10956	chrM:8838:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0	SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	769P_KIDNEY	1	1	0.0611	FALSE	0	0	0	2	0	FALSE	ACH-000411
769P_KIDNEY	MT-TA--MT-TC	3	7	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0.0855	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	769P_KIDNEY	1	1	0.1222	FALSE	462	80	0	856	0	FALSE	ACH-000411
769P_KIDNEY	MT-CO3--MT-ATP6	3	5	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0367	0.0611	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	769P_KIDNEY	0.8	1	0.0978	FALSE	189	492	56	216	0	FALSE	ACH-000411
769P_KIDNEY	MT-ND4--MT-ND4L	4	1	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0.0122	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	769P_KIDNEY	1	1	0.0611	FALSE	344	821	44	306	0	FALSE	ACH-000411
769P_KIDNEY	RPLP1--KIF23	4	1	RPLP1	1938	chr15:69746060:+	KIF23	26408	chr15:69739210:+	ONLY_REF_SPLICE	YES	3473	171	0	0.03	0.0489	0.0122	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[4359],RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,KIF23->chr15:69706585-69740764:+,kinesin_family_member_23	769P_KIDNEY	0	0.03	0.0611	FALSE	0	0	0	1	0	FALSE	ACH-000411
769P_KIDNEY	FTH1--ACTG1	4	0	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	769P_KIDNEY	1	1	0.0489	TRUE	0	0	0	64	0	FALSE	ACH-000411
769P_KIDNEY	MT-ATP6--MT-CO1	4	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	769P_KIDNEY	1	1	0.0489	FALSE	183	104	9	328	0	FALSE	ACH-000411
769P_KIDNEY	MT-ATP6--MT-CO1	4	0	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	769P_KIDNEY	1	1	0.0489	FALSE	183	104	9	328	0	FALSE	ACH-000411
769P_KIDNEY	MT-ATP6--MT-CO1	4	0	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	769P_KIDNEY	1	1	0.0489	FALSE	183	104	9	328	0	FALSE	ACH-000411
769P_KIDNEY	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	769P_KIDNEY	1	1	0.0489	TRUE	0	0	0	434	0	FALSE	ACH-000411
769P_KIDNEY	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	769P_KIDNEY	1	1	0.0489	TRUE	0	0	0	434	0	FALSE	ACH-000411
769P_KIDNEY	SAMD5--SASH1	4	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0489	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	769P_KIDNEY	1	1	0.0489	TRUE	53	396	64	110	0	FALSE	ACH-000411
769P_KIDNEY	HSP90AB1--MT-RNR2	3	2	HSP90AB1	7417	chr6:44221240:+	MT-RNR2	10867	chrM:1740:+	INCL_NON_REF_SPLICE	YES	3197	0	0	1	0.0367	0.0244	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	769P_KIDNEY	0	1	0.0611	FALSE	13	9	0	364	0	FALSE	ACH-000411
769P_KIDNEY	MT-ATP6--MT-CO1	3	2	MT-ATP6	1436	chrM:8962:+	MT-CO1	5163	chrM:6385:+	INCL_NON_REF_SPLICE	YES	9498	17681	0	0	0.0367	0.0244	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	769P_KIDNEY	0	0	0.0611	FALSE	183	104	9	328	0	FALSE	ACH-000411
769P_KIDNEY	MT-ND4--MT-ND4L	3	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	3	0	0.57	1	0.0367	0.0122	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	769P_KIDNEY	0.57	1	0.0489	FALSE	344	821	44	306	0	FALSE	ACH-000411
769P_KIDNEY	ELOVL5--GCM1	2	4	ELOVL5	1333	chr6:53213615:-	GCM1	20455	chr6:53010566:-	ONLY_REF_SPLICE	YES	168	0	0.03	1	0.0244	0.0489	ELOVL5->ELOVL_fatty_acid_elongase_5,Oncogene{Bushman},chr6:53132196-53213947:-,GCM1->chr6:52991762-53013627:-,glial_cells_missing_homolog_1	769P_KIDNEY	0.03	1	0.0733	TRUE	0	1	0	1	1	FALSE	ACH-000411
769P_KIDNEY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1153	chrM:8679:+	MT-CO1	4732	chrM:5954:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	769P_KIDNEY	1	1	0.0367	FALSE	182	97	9	327	0	FALSE	ACH-000411
769P_KIDNEY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	769P_KIDNEY	1	1	0.0367	FALSE	183	104	9	328	0	FALSE	ACH-000411
769P_KIDNEY	MT-CO3--MT-ATP6	3	0	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	769P_KIDNEY	1	1	0.0367	FALSE	189	492	56	216	0	FALSE	ACH-000411
769P_KIDNEY	PSAP--EEF2	3	0	PSAP	8550	chr10:73581651:-	EEF2	25206	chr19:3976572:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.05%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	769P_KIDNEY	1	1	0.0367	TRUE	0	0	0	2	0	TRUE	ACH-000411
769P_KIDNEY	RNF115--TRNAU1AP	2	4	RNF115	1306	chr1:145611341:+	TRNAU1AP	32193	chr1:28904012:+	ONLY_REF_SPLICE	YES	12	35	0.33	0.15	0.0244	0.0489	{Klijn_CCL:Kidney=1},RNF115->chr1:145611036-145696218:+,ring_finger_protein_115,TRNAU1AP->chr1:28879597-28905051:+,tRNA_selenocysteine_1_associated_protein_1	769P_KIDNEY	0.15	0.33	0.0733	TRUE	0	0	0	1	0	TRUE	ACH-000411
769P_KIDNEY	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	44	1	0.06	0.0244	0.0122	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	769P_KIDNEY	0.06	1	0.0366	TRUE	465	1949	224	605	0	FALSE	ACH-000411
769P_KIDNEY	SLC2A13--AC079630.2	2	1	SLC2A13	11825	chr12:40223905:-	AC079630.2	25253	chr12:40561050:+	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0244	0.0122	LOCAL_INVERSION:-:+:[50150],SLC2A13->chr12:40148823-40499891:-,solute_carrier_family_2_member_13,AC079630.2->chr12:40550041-40561509:+	769P_KIDNEY	0.43	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000411
769P_KIDNEY	CTDSPL2--CASC4	2	0	CTDSPL2	1539	chr15:44719970:+	CASC4	38385	chr15:44671888:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	LOCAL_REARRANGEMENT:+:[11476],CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+	769P_KIDNEY	1	1	0.0244	TRUE	0	0	0	4	0	TRUE	ACH-000411
769P_KIDNEY	AC002066.1--AC073130.1	1	1	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	NO	2	0	0.5	1	0.0122	0.0122	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	769P_KIDNEY	0.5	1	0.0244	FALSE	0	1	1	30	0	FALSE	ACH-000411
769P_KIDNEY	AC002066.1--AC073130.1	1	1	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0122	0.0122	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	769P_KIDNEY	0.67	1	0.0244	FALSE	0	3	0	33	0	FALSE	ACH-000411
769P_KIDNEY	RAD23A--CALR	1	1	RAD23A	3727	chr19:13060222:+	CALR	12809	chr19:13054351:+	ONLY_REF_SPLICE	YES	378	1888	0.01	0	0.0122	0.0122	LOCAL_REARRANGEMENT:+:[1366],RAD23A->Oncogene{Bushman},RAD23_homolog_A,_nucleotide_excision_repair_protein,chr19:13056669-13064456:+,CALR->calreticulin,chr19:13049392-13055303:+	769P_KIDNEY	0	0.01	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000411
769P_KIDNEY	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	0	3	1	0.4	0.0122	0.0122	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	769P_KIDNEY	0.4	1	0.0244	FALSE	0	23	1	67	0	FALSE	ACH-000411
769P_KIDNEY	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	0	9	1	0.18	0.0122	0.0122	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	769P_KIDNEY	0.18	1	0.0244	FALSE	16	356	14	466	0	FALSE	ACH-000411
769P_KIDNEY	RPLP1--KIF23	1	1	RPLP1	1938	chr15:69746060:+	KIF23	16465	chr15:69721450:+	ONLY_REF_SPLICE	YES	3473	96	0	0.02	0.0122	0.0122	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[4359],RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,KIF23->chr15:69706585-69740764:+,kinesin_family_member_23	769P_KIDNEY	0	0.02	0.0244	FALSE	0	0	0	5	0	FALSE	ACH-000411
769P_KIDNEY	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	469	1	0	0.0122	0.0122	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	769P_KIDNEY	0	1	0.0244	FALSE	0	59	0	125	0	FALSE	ACH-000411
769P_KIDNEY	RRAGB--RP13-188A5.1	1	1	RRAGB	12090	chrX:55783764:+	RP13-188A5.1	18212	chrX:56041278:+	ONLY_REF_SPLICE	NO	17	0	0.11	1	0.0122	0.0122	GTEx_FI:{Esophagus=[count:5=pct:1.2],Lung=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9]},RRAGB->Ras_related_GTP_binding_B,chrX:55744172-55785207:+,RP13-188A5.1->chrX:55934556-56041606:+	769P_KIDNEY	0.11	1	0.0244	TRUE	11	9	2	1	0	FALSE	ACH-000411
769P_KIDNEY	SQSTM1--CANX	1	1	SQSTM1	4149	chr5:179238682:+	CANX	26812	chr5:179132680:+	ONLY_REF_SPLICE	YES	111	771	0.02	0	0.0122	0.0122	GTEx_v2:{count=1;pct=0.01%;dist=Minor_Salivary_Gland=1},LOCAL_REARRANGEMENT:+:[75462],SQSTM1->chr5:179233388-179265078:+,sequestosome_1,CANX->calnexin,chr5:179105629-179157926:+	769P_KIDNEY	0	0.02	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000411
769P_KIDNEY	TANK--PSMD14	1	1	TANK	2346	chr2:162016997:+	PSMD14	27441	chr2:162223989:+	ONLY_REF_SPLICE	YES	76	510	0.03	0	0.0122	0.0122	NEIGHBORS[71817],TANK->TRAF_family_member_associated_NFKB_activator,chr2:161993419-162092732:+,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	769P_KIDNEY	0	0.03	0.0244	FALSE	0	1	0	2	0	FALSE	ACH-000411
NCIH2452_PLEURA	TIMM23B--LINC00843	103	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0451	0.2537	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2452_PLEURA	1	1	1.2988	TRUE	508	994	45	981	0	FALSE	ACH-000092
NCIH2452_PLEURA	TIMM23--RP11-464F9.1	70	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	410	10	0.15	0.88	0.7103	0.0101	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2452_PLEURA	0.15	0.88	0.7204	TRUE	519	3926	326	965	0	FALSE	ACH-000092
NCIH2452_PLEURA	TAF15--MPP2	41	28	TAF15	4646	chr17:34144759:+	MPP2	26279	chr17:41981861:-	ONLY_REF_SPLICE	YES	239	0	0.22	1	0.416	0.2841	TAF15->Oncogene{Bushman},TATA-box_binding_protein_associated_factor_15,chr17:34136459-34191619:+,MPP2->chr17:41952725-41987068:-,membrane_palmitoylated_protein_2	NCIH2452_PLEURA	0.22	1	0.7001	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	EOGT--LRRC3B	31	21	EOGT	9032	chr3:69050759:-	LRRC3B	28181	chr3:26751004:+	ONLY_REF_SPLICE	YES	15	0	0.78	1	0.3145	0.2131	EOGT->EGF_domain_specific_O-linked_N-acetylglucosamine_transferase,chr3:69024365-69063112:-,LRRC3B->chr3:26664297-26752267:+,leucine_rich_repeat_containing_3B	NCIH2452_PLEURA	0.78	1	0.5276	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	MT-TA--MT-TC	33	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3348	0.071	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2452_PLEURA	1	1	0.4058	FALSE	462	80	0	856	0	FALSE	ACH-000092
NCIH2452_PLEURA	SENP5--NCBP2	26	25	SENP5	12675	chr3:196657771:+	NCBP2	19540	chr3:196669418:-	INCL_NON_REF_SPLICE	YES	27	0	0.65	1	0.2638	0.2537	LOCAL_INVERSION:+:-:[688],SENP5->SUMO1/sentrin_specific_peptidase_5,chr3:196594727-196661585:+,NCBP2->chr3:196662273-196669468:-,nuclear_cap_binding_protein_subunit_2	NCIH2452_PLEURA	0.65	1	0.5175	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	EOGT--LRRC3B	21	30	EOGT	9032	chr3:69050759:-	LRRC3B	27109	chr3:26742716:+	ONLY_REF_SPLICE	YES	15	0	0.77	1	0.2131	0.3044	EOGT->EGF_domain_specific_O-linked_N-acetylglucosamine_transferase,chr3:69024365-69063112:-,LRRC3B->chr3:26664297-26752267:+,leucine_rich_repeat_containing_3B	NCIH2452_PLEURA	0.77	1	0.5175	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	MT-ND6--MT-TE	27	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.274	0.0101	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2452_PLEURA	1	1	0.2841	FALSE	499	1288	110	792	0	FALSE	ACH-000092
NCIH2452_PLEURA	HOOK3--ADAM32	22	20	HOOK3	2343	chr8:42761401:+	ADAM32	66272	chr8:39103602:+	ONLY_REF_SPLICE	YES	18	8	0.7	0.84	0.2232	0.2029	HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3,ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+	NCIH2452_PLEURA	0.7	0.84	0.4261	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	EOGT--LRRC3B	19	16	EOGT	7925	chr3:69053529:-	LRRC3B	28181	chr3:26751004:+	ONLY_REF_SPLICE	YES	15	0	0.7	1	0.1928	0.1623	EOGT->EGF_domain_specific_O-linked_N-acetylglucosamine_transferase,chr3:69024365-69063112:-,LRRC3B->chr3:26664297-26752267:+,leucine_rich_repeat_containing_3B	NCIH2452_PLEURA	0.7	1	0.3551	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	MT-ND6--MT-TE	19	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1928	0.0913	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2452_PLEURA	0.97	1	0.2841	FALSE	499	1288	110	792	0	FALSE	ACH-000092
NCIH2452_PLEURA	RP11-680G10.1--GSE1	17	11	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.74	0.1725	0.1116	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2452_PLEURA	0.74	1	0.2841	TRUE	458	1351	185	561	0	FALSE	ACH-000092
NCIH2452_PLEURA	SENP5--NCBP2	8	35	SENP5	14310	chr3:196659406:+	NCBP2	19540	chr3:196669418:-	INCL_NON_REF_SPLICE	YES	59	0	0.42	1	0.0812	0.3551	LOCAL_INVERSION:+:-:[688],SENP5->SUMO1/sentrin_specific_peptidase_5,chr3:196594727-196661585:+,NCBP2->chr3:196662273-196669468:-,nuclear_cap_binding_protein_subunit_2	NCIH2452_PLEURA	0.42	1	0.4363	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	NRIP1--AF127936.7	15	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.64	1	0.1522	0.0304	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2452_PLEURA	0.64	1	0.1826	FALSE	292	1546	117	613	0	FALSE	ACH-000092
NCIH2452_PLEURA	SENP5--NCBP2	6	39	SENP5	15556	chr3:196660652:+	NCBP2	19533	chr3:196669425:-	INCL_NON_REF_SPLICE	YES	25	0	0.64	1	0.0609	0.3957	LOCAL_INVERSION:+:-:[688],SENP5->SUMO1/sentrin_specific_peptidase_5,chr3:196594727-196661585:+,NCBP2->chr3:196662273-196669468:-,nuclear_cap_binding_protein_subunit_2	NCIH2452_PLEURA	0.64	1	0.4566	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	C15orf57--CBX3	13	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	60	50	0.26	0.3	0.1319	0.0812	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2452_PLEURA	0.26	0.3	0.2131	TRUE	267	562	48	632	0	FALSE	ACH-000092
NCIH2452_PLEURA	USP32--TANC2	13	4	USP32	4918	chr17:58422842:-	TANC2	68482	chr17:61457079:+	ONLY_REF_SPLICE	YES	104	5	0.14	0.77	0.1319	0.0406	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2	NCIH2452_PLEURA	0.14	0.77	0.1725	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	HOOK3--ADAM32	7	25	HOOK3	2343	chr8:42761401:+	ADAM32	63979	chr8:39089546:+	ONLY_REF_SPLICE	YES	18	3	0.64	0.91	0.071	0.2537	HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3,ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+	NCIH2452_PLEURA	0.64	0.91	0.3247	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	RP11-123O10.4--GRIP1	12	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1218	0.0507	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2452_PLEURA	1	1	0.1725	FALSE	416	2512	207	587	0	FALSE	ACH-000092
NCIH2452_PLEURA	MT-ND6--MT-TE	12	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1218	0.0101	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2452_PLEURA	1	1	0.1319	FALSE	499	1288	110	792	0	FALSE	ACH-000092
NCIH2452_PLEURA	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1116	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2452_PLEURA	1	1	0.1116	TRUE	0	0	0	434	0	FALSE	ACH-000092
NCIH2452_PLEURA	ASB16-AS1--LRRC46	8	10	ASB16-AS1	2317	chr17:42260298:-	LRRC46	14188	chr17:45914116:+	ONLY_REF_SPLICE	YES	32	3	0.36	0.86	0.0812	0.1015	ASB16-AS1->ASB16_antisense_RNA_1,chr17:42253341-42264085:-,LRRC46->chr17:45908993-45915079:+,leucine_rich_repeat_containing_46	NCIH2452_PLEURA	0.36	0.86	0.1827	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	SENP5--NCBP2	3	27	SENP5	12743	chr3:196657839:+	NCBP2	19540	chr3:196669418:-	INCL_NON_REF_SPLICE	YES	31	0	0.49	1	0.0304	0.274	LOCAL_INVERSION:+:-:[688],SENP5->SUMO1/sentrin_specific_peptidase_5,chr3:196594727-196661585:+,NCBP2->chr3:196662273-196669468:-,nuclear_cap_binding_protein_subunit_2	NCIH2452_PLEURA	0.49	1	0.3044	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	RP11-680G10.1--GSE1	8	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	64	1	0.18	0.0812	0.0609	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2452_PLEURA	0.18	1	0.1421	TRUE	465	1949	224	605	0	FALSE	ACH-000092
NCIH2452_PLEURA	EOGT--LRRC3B	4	21	EOGT	7925	chr3:69053529:-	LRRC3B	27109	chr3:26742716:+	ONLY_REF_SPLICE	YES	15	0	0.62	1	0.0406	0.2131	EOGT->EGF_domain_specific_O-linked_N-acetylglucosamine_transferase,chr3:69024365-69063112:-,LRRC3B->chr3:26664297-26752267:+,leucine_rich_repeat_containing_3B	NCIH2452_PLEURA	0.62	1	0.2537	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	MT-TA--MT-TC	7	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.071	0.071	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2452_PLEURA	1	1	0.142	FALSE	462	80	0	856	0	FALSE	ACH-000092
NCIH2452_PLEURA	CDH13--RP11-22H5.2	8	2	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	114	0	0.08	1	0.0812	0.0203	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH2452_PLEURA	0.08	1	0.1015	FALSE	14	31	0	36	0	FALSE	ACH-000092
NCIH2452_PLEURA	HOOK3--ADAM32	3	22	HOOK3	2343	chr8:42761401:+	ADAM32	65088	chr8:39091418:+	ONLY_REF_SPLICE	YES	18	5	0.58	0.83	0.0304	0.2232	HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3,ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+	NCIH2452_PLEURA	0.58	0.83	0.2536	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	GMDS--C17orf61-PLSCR3	7	1	GMDS	10931	chr6:1930337:-	C17orf61-PLSCR3	24210	chr17:7298409:-	ONLY_REF_SPLICE	YES	17	5	0.32	0.62	0.071	0.0101	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,C17orf61-PLSCR3->chr17:7293053-7307416:-	NCIH2452_PLEURA	0.32	0.62	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	MT-ND6--MT-TE	4	10	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0406	0.1015	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2452_PLEURA	0.93	1	0.1421	FALSE	499	1288	110	792	0	FALSE	ACH-000092
NCIH2452_PLEURA	TAF15--MPP2	6	2	TAF15	1122	chr17:34136580:+	MPP2	29437	chr17:41975748:-	ONLY_REF_SPLICE	YES	22	4	0.27	0.67	0.0609	0.0203	TAF15->Oncogene{Bushman},TATA-box_binding_protein_associated_factor_15,chr17:34136459-34191619:+,MPP2->chr17:41952725-41987068:-,membrane_palmitoylated_protein_2	NCIH2452_PLEURA	0.27	0.67	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	TBC1D31--KCNB2	5	5	TBC1D31	10556	chr8:124109681:+	KCNB2	35435	chr8:73479877:+	ONLY_REF_SPLICE	YES	17	0	0.37	1	0.0507	0.0507	TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+,KCNB2->chr8:73449626-73850584:+,potassium_voltage-gated_channel_subfamily_B_member_2	NCIH2452_PLEURA	0.37	1	0.1014	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	ASB16-AS1--LRRC46	5	4	ASB16-AS1	1153	chr17:42263933:-	LRRC46	14188	chr17:45914116:+	ONLY_REF_SPLICE	YES	39	3	0.19	0.75	0.0507	0.0406	ASB16-AS1->ASB16_antisense_RNA_1,chr17:42253341-42264085:-,LRRC46->chr17:45908993-45915079:+,leucine_rich_repeat_containing_46	NCIH2452_PLEURA	0.19	0.75	0.0913	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2452_PLEURA	1	1	0.0609	FALSE	462	80	0	856	0	FALSE	ACH-000092
NCIH2452_PLEURA	SCARB1--UBC	6	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0609	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH2452_PLEURA	1	1	0.0609	TRUE	55	66	6	101	0	FALSE	ACH-000092
NCIH2452_PLEURA	CDH13--RP11-22H5.2	5	2	CDH13	5791	chr16:82738771:+	RP11-22H5.2	41963	chr16:82862870:+	INCL_NON_REF_SPLICE	YES	143	0	0.05	1	0.0507	0.0203	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH2452_PLEURA	0.05	1	0.071	FALSE	0	1	0	4	0	FALSE	ACH-000092
NCIH2452_PLEURA	SENP5--NCBP2	3	10	SENP5	12743	chr3:196657839:+	NCBP2	21601	chr3:196666303:-	INCL_NON_REF_SPLICE	YES	31	253	0.3	0.05	0.0304	0.1015	LOCAL_INVERSION:+:-:[688],SENP5->SUMO1/sentrin_specific_peptidase_5,chr3:196594727-196661585:+,NCBP2->chr3:196662273-196669468:-,nuclear_cap_binding_protein_subunit_2	NCIH2452_PLEURA	0.05	0.3	0.1319	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	NRIP1--AF127936.7	3	9	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	33	0	0.27	1	0.0304	0.0913	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2452_PLEURA	0.27	1	0.1217	FALSE	164	806	69	479	0	FALSE	ACH-000092
NCIH2452_PLEURA	CDH13--RP11-22H5.2	4	4	CDH13	8102	chr16:82756714:+	RP11-22H5.2	41963	chr16:82862870:+	INCL_NON_REF_SPLICE	YES	150	0	0.05	1	0.0406	0.0406	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH2452_PLEURA	0.05	1	0.0812	FALSE	0	0	0	3	0	FALSE	ACH-000092
NCIH2452_PLEURA	DPH6-AS1--NRG4	5	0	DPH6-AS1	1279	chr15:35838674:+	NRG4	25328	chr15:76235995:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0507	0	DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,NRG4->chr15:76228310-76352136:-,neuregulin_4	NCIH2452_PLEURA	1	1	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2452_PLEURA	1	1	0.0507	FALSE	499	1288	110	792	0	FALSE	ACH-000092
NCIH2452_PLEURA	YWHAE--CRK	4	4	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	2765	265	0	0.03	0.0406	0.0406	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NCIH2452_PLEURA	0	0.03	0.0812	FALSE	6	50	7	115	0	FALSE	ACH-000092
NCIH2452_PLEURA	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.88	0.88	0.0406	0.0304	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2452_PLEURA	0.88	0.88	0.071	FALSE	515	4851	409	746	0	FALSE	ACH-000092
NCIH2452_PLEURA	HK1--KIAA1279	4	2	HK1	29460	chr10:71154861:+	KIAA1279	37115	chr10:70760180:+	ONLY_REF_SPLICE	YES	784	136	0.01	0.04	0.0406	0.0203	HK1->chr10:71029740-71161638:+,hexokinase_1,KIAA1279->chr10:70748487-70776738:+	NCIH2452_PLEURA	0.01	0.04	0.0609	FALSE	0	0	0	1	0	FALSE	ACH-000092
NCIH2452_PLEURA	NRIP1--AF127936.7	3	4	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	33	5	0.17	0.58	0.0304	0.0406	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2452_PLEURA	0.17	0.58	0.071	FALSE	8	57	1	47	0	FALSE	ACH-000092
NCIH2452_PLEURA	SNX11--CABLES1	3	4	SNX11	5977	chr17:46190763:+	CABLES1	28506	chr18:20832924:+	ONLY_REF_SPLICE	YES	139	30	0.05	0.19	0.0304	0.0406	SNX11->chr17:46180719-46200436:+,sorting_nexin_11,CABLES1->Cdk5_and_Abl_enzyme_substrate_1,chr18:20714528-20840431:+	NCIH2452_PLEURA	0.05	0.19	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	TAF15--MPP2	3	3	TAF15	4646	chr17:34144759:+	MPP2	31374	chr17:41960723:-	ONLY_REF_SPLICE	YES	239	13	0.02	0.32	0.0304	0.0304	TAF15->Oncogene{Bushman},TATA-box_binding_protein_associated_factor_15,chr17:34136459-34191619:+,MPP2->chr17:41952725-41987068:-,membrane_palmitoylated_protein_2	NCIH2452_PLEURA	0.02	0.32	0.0608	TRUE	0	0	0	1	0	FALSE	ACH-000092
NCIH2452_PLEURA	SENP5--NCBP2	1	10	SENP5	12675	chr3:196657771:+	NCBP2	21601	chr3:196666303:-	ONLY_REF_SPLICE	YES	27	253	0.29	0.04	0.0101	0.1015	LOCAL_INVERSION:+:-:[688],SENP5->SUMO1/sentrin_specific_peptidase_5,chr3:196594727-196661585:+,NCBP2->chr3:196662273-196669468:-,nuclear_cap_binding_protein_subunit_2	NCIH2452_PLEURA	0.04	0.29	0.1116	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	HLA-B--MDK	3	0	HLA-B	2871	chr6:31323095:-	MDK	10137	chr11:46405125:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	HLA-B->chr6:31321649-31324965:-,major_histocompatibility_complex,_class_I,_B,MDK->Oncogene{Bushman},chr11:46402306-46405375:+,midkine_(neurite_growth-promoting_factor_2)	NCIH2452_PLEURA	1	1	0.0304	FALSE	0	0	0	1	0	FALSE	ACH-000092
NCIH2452_PLEURA	NAP1L4--NUP98	3	0	NAP1L4	1124	chr11:3013484:-	NUP98	39193	chr11:3774638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	NAP1L4->chr11:2965667-3013607:-,nucleosome_assembly_protein_1_like_4,NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa	NCIH2452_PLEURA	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	RP11-275N1.1--NEBL	3	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	NCIH2452_PLEURA	1	1	0.0304	TRUE	0	0	0	21	0	FALSE	ACH-000092
NCIH2452_PLEURA	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0203	0.0406	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2452_PLEURA	0.86	1	0.0609	FALSE	407	2205	196	549	0	FALSE	ACH-000092
NCIH2452_PLEURA	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0203	0.0406	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2452_PLEURA	0.86	0.86	0.0609	FALSE	467	2173	244	435	0	FALSE	ACH-000092
NCIH2452_PLEURA	VIM--CALR	3	0	VIM	2412	chr10:17271669:+	CALR	12764	chr19:13049951:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	VIM->chr10:17270258-17279592:+,vimentin,CALR->calreticulin,chr19:13049392-13055303:+	NCIH2452_PLEURA	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	YIPF6--BAZ1B	3	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	NCIH2452_PLEURA	1	1	0.0304	TRUE	1	23	1	24	8	FALSE	ACH-000092
NCIH2452_PLEURA	HOOK3--ADAM32	1	7	HOOK3	2343	chr8:42761401:+	ADAM32	67356	chr8:39111933:+	ONLY_REF_SPLICE	YES	18	9	0.31	0.47	0.0101	0.071	HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3,ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+	NCIH2452_PLEURA	0.31	0.47	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	NRIP1--AF127936.7	1	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	23	0	0.23	1	0.0101	0.0609	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2452_PLEURA	0.23	1	0.071	FALSE	125	705	46	456	0	FALSE	ACH-000092
NCIH2452_PLEURA	SEPT11--CCNI	2	2	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	74	185	0.05	0.02	0.0203	0.0203	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	NCIH2452_PLEURA	0.02	0.05	0.0406	TRUE	0	1	0	17	0	FALSE	ACH-000092
NCIH2452_PLEURA	CANX--HMGB3P22	2	1	CANX	11365	chr5:179137066:+	HMGB3P22	26412	chr5:179121307:+	ONLY_REF_SPLICE	YES	2219	0	0	1	0.0203	0.0101	NEIGHBORS_OVERLAP:+:+:[15749],CANX->calnexin,chr5:179105629-179157926:+,HMGB3P22->chr5:179106033-179121782:+,high_mobility_group_box_3_pseudogene_22	NCIH2452_PLEURA	0	1	0.0304	FALSE	0	1	0	1	0	FALSE	ACH-000092
NCIH2452_PLEURA	GMDS--C17orf61-PLSCR3	2	1	GMDS	8873	chr6:1960101:-	C17orf61-PLSCR3	24210	chr17:7298409:-	ONLY_REF_SPLICE	YES	14	5	0.18	0.38	0.0203	0.0101	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,C17orf61-PLSCR3->chr17:7293053-7307416:-	NCIH2452_PLEURA	0.18	0.38	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	HOOK3--ADAM32	2	1	HOOK3	2343	chr8:42761401:+	ADAM32	69617	chr8:39128395:+	ONLY_REF_SPLICE	YES	18	9	0.14	0.25	0.0203	0.0101	HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3,ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+	NCIH2452_PLEURA	0.14	0.25	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0101	0.0507	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2452_PLEURA	0.86	1	0.0608	FALSE	192	492	57	212	0	FALSE	ACH-000092
NCIH2452_PLEURA	WRN--PPP2CB	2	1	WRN	2345	chr8:30916059:+	PPP2CB	43452	chr8:30657271:-	ONLY_REF_SPLICE	YES	47	665	0.06	0	0.0203	0.0101	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1},WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+,PPP2CB->chr8:30631973-30671830:-,protein_phosphatase_2_catalytic_subunit_beta	NCIH2452_PLEURA	0	0.06	0.0304	FALSE	0	0	0	1	0	FALSE	ACH-000092
NCIH2452_PLEURA	APBB2--UBP1	2	0	APBB2	2423	chr4:41216422:-	UBP1	42862	chr3:33467233:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-,UBP1->chr3:33429828-33482863:-,upstream_binding_protein_1_(LBP-1a)	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	ASPH--CLINT1	2	0	ASPH	35331	chr8:62475303:-	CLINT1	62321	chr5:157216575:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,CLINT1->chr5:157212751-157286183:-,clathrin_interactor_1	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	CAMK2D--RP11-499E18.1	2	0	CAMK2D	5636	chr4:114582869:-	RP11-499E18.1	36959	chr4:103340516:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CAMK2D->Oncogene{Bushman},calcium/calmodulin_dependent_protein_kinase_II_delta,chr4:114372188-114683083:-,RP11-499E18.1->chr4:103339759-103371167:-	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	CANX--HMGB3P22	2	0	CANX	1150	chr5:179105778:+	HMGB3P22	26412	chr5:179121307:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	NEIGHBORS_OVERLAP:+:+:[15749],CANX->calnexin,chr5:179105629-179157926:+,HMGB3P22->chr5:179106033-179121782:+,high_mobility_group_box_3_pseudogene_22	NCIH2452_PLEURA	1	1	0.0203	FALSE	0	0	0	1	0	FALSE	ACH-000092
NCIH2452_PLEURA	CNIH3--DEGS1	2	0	CNIH3	3913	chr1:224703578:+	DEGS1	34185	chr1:224380034:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CNIH3->chr1:224622362-224928251:+,cornichon_family_AMPA_receptor_auxiliary_protein_3,DEGS1->chr1:224363458-224381143:+,delta(4)-desaturase,_sphingolipid_1	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	CTBP2--RP11-298J20.4	2	0	CTBP2	11531	chr10:126727566:-	RP11-298J20.4	28824	chr10:126631026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_INVERSION:-:+:[44971],CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-,RP11-298J20.4->chr10:126605712-126631450:+	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	ENTPD4--UVSSA	2	0	ENTPD4	18819	chr8:23261467:-	UVSSA	25074	chr4:1341878:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ENTPD4->chr8:23243296-23315208:-,ectonucleoside_triphosphate_diphosphohydrolase_4,UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	FGFRL1--GAK	2	0	FGFRL1	3629	chr4:1006352:+	GAK	18109	chr4:898567:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_INVERSION:+:-:[77563],FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	HDAC2--NT5DC1	2	0	HDAC2	2607	chr6:114292021:-	NT5DC1	44678	chr6:116565072:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	HDAC2->Oncogene{Bushman},chr6:114254192-114332472:-,histone_deacetylase_2,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	HNRNPA2B1--SHARPIN	2	0	HNRNPA2B1	1958	chr7:26240192:-	SHARPIN	17874	chr8:145158128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,SHARPIN->SHANK_associated_RH_domain_interactor,chr8:145153536-145163027:-	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	MAML2--CEP57	2	0	MAML2	2798	chr11:96074547:-	CEP57	19069	chr11:95532396:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=3;pct=0.03%;dist=Ovary=1,Thyroid=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Urinary_Bladder=1},MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,CEP57->centrosomal_protein_57,chr11:95523129-95565857:+	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	1	0	3	1	TRUE	ACH-000092
NCIH2452_PLEURA	PPP4R1--NDUFV2	2	0	PPP4R1	9044	chr18:9588087:-	NDUFV2	33465	chr18:9117836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	PRR14L--YWHAH	2	0	PRR14L	1148	chr22:32145979:-	YWHAH	28929	chr22:32352126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	PRR14L->chr22:32072242-32146126:-,proline_rich_14_like,YWHAH->chr22:32340447-32353590:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_eta	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	1	0	2	0	TRUE	ACH-000092
NCIH2452_PLEURA	RCC1--TAF6	2	0	RCC1	2175	chr1:28834672:+	TAF6	22734	chr7:99711891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TAF6->TATA-box_binding_protein_associated_factor_6,chr7:99704693-99717464:-	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	1	0	1	1	TRUE	ACH-000092
NCIH2452_PLEURA	SREBF2--SH3PXD2A	2	0	SREBF2	12729	chr22:42281015:+	SH3PXD2A	40493	chr10:105420872:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,SH3PXD2A->SH3_and_PX_domains_2A,chr10:105348285-105615301:-	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	TAF15--MPP2	2	0	TAF15	1122	chr17:34136580:+	MPP2	31374	chr17:41960723:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	TAF15->Oncogene{Bushman},TATA-box_binding_protein_associated_factor_15,chr17:34136459-34191619:+,MPP2->chr17:41952725-41987068:-,membrane_palmitoylated_protein_2	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	WDR35--TUBGCP5	2	0	WDR35	1967	chr2:20188926:-	TUBGCP5	36744	chr15:22835916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	WDR35->WD_repeat_domain_35,chr2:20110021-20189892:-,TUBGCP5->chr15:22833395-22873892:+,tubulin_gamma_complex_associated_protein_5	NCIH2452_PLEURA	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	CDH13--RP11-22H5.2	1	3	CDH13	7013	chr16:82753080:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	146	0	0.03	1	0.0101	0.0304	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH2452_PLEURA	0.03	1	0.0405	FALSE	1	1	0	8	0	FALSE	ACH-000092
NCIH2452_PLEURA	RP11-275N1.1--NEBL	1	3	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	1	12	0.8	0.25	0.0101	0.0304	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	NCIH2452_PLEURA	0.25	0.8	0.0405	TRUE	0	2	0	25	2	FALSE	ACH-000092
NCIH2452_PLEURA	CDH13--RP11-22H5.2	1	2	CDH13	2482	chr16:82671372:+	RP11-22H5.2	37471	chr16:82856817:+	ONLY_REF_SPLICE	YES	136	0	0.02	1	0.0101	0.0203	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH2452_PLEURA	0.02	1	0.0304	FALSE	0	1	0	2	0	FALSE	ACH-000092
NCIH2452_PLEURA	CDH13--RP11-22H5.2	1	2	CDH13	1335	chr16:82660742:+	RP11-22H5.2	37471	chr16:82856817:+	ONLY_REF_SPLICE	YES	114	0	0.03	1	0.0101	0.0203	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH2452_PLEURA	0.03	1	0.0304	FALSE	0	1	0	7	0	FALSE	ACH-000092
NCIH2452_PLEURA	CDH13--RP11-22H5.2	1	2	CDH13	2482	chr16:82671372:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	136	0	0.02	1	0.0101	0.0203	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH2452_PLEURA	0.02	1	0.0304	FALSE	0	5	0	7	0	FALSE	ACH-000092
NCIH2452_PLEURA	EOGT--LRRC3B	1	2	EOGT	6068	chr3:69056864:-	LRRC3B	28181	chr3:26751004:+	ONLY_REF_SPLICE	NO	49	0	0.06	1	0.0101	0.0203	EOGT->EGF_domain_specific_O-linked_N-acetylglucosamine_transferase,chr3:69024365-69063112:-,LRRC3B->chr3:26664297-26752267:+,leucine_rich_repeat_containing_3B	NCIH2452_PLEURA	0.06	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	NRIP1--AF127936.7	1	2	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	10	5	0.23	0.38	0.0101	0.0203	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2452_PLEURA	0.23	0.38	0.0304	FALSE	25	145	6	90	0	FALSE	ACH-000092
NCIH2452_PLEURA	ATP6V0E1--ERGIC1	1	1	ATP6V0E1	1208	chr5:172410967:+	ERGIC1	34747	chr5:172377712:+	ONLY_REF_SPLICE	YES	1521	589	0	0	0.0101	0.0101	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[31072],ATP6V0E1->ATPase_H+_transporting_V0_subunit_e1,chr5:172410760-172462448:+,ERGIC1->chr5:172261278-172379688:+,endoplasmic_reticulum-golgi_intermediate_compartment_1	NCIH2452_PLEURA	0	0	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000092
NCIH2452_PLEURA	C19orf10--CHAF1A	1	1	C19orf10	2312	chr19:4668607:-	CHAF1A	20592	chr19:4430546:+	ONLY_REF_SPLICE	YES	1151	156	0	0.01	0.0101	0.0101	C19orf10->chr19:4641386-4670382:-,CHAF1A->chr19:4402659-4445015:+,chromatin_assembly_factor_1_subunit_A	NCIH2452_PLEURA	0	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000092
NCIH2452_PLEURA	CBLB--ALCAM	1	1	CBLB	5397	chr3:105495240:-	ALCAM	55777	chr3:105290696:+	ONLY_REF_SPLICE	YES	24	710	0.08	0	0.0101	0.0101	GTEx_v2:{count=1;pct=0.01%;dist=Bladder=1},LOCAL_INVERSION:-:+:[78561],CBLB->Cbl_proto-oncogene_B,Oncogene{Bushman},chr3:105374305-105588396:-,ALCAM->activated_leukocyte_cell_adhesion_molecule,chr3:105085753-105295744:+	NCIH2452_PLEURA	0	0.08	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000092
NCIH2452_PLEURA	CLIC4--MKI67	1	1	CLIC4	1269	chr1:25072116:+	MKI67	17326	chr10:129917583:-	ONLY_REF_SPLICE	YES	1948	213	0	0.01	0.0101	0.0101	CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	NCIH2452_PLEURA	0	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000092
NCIH2452_PLEURA	CNPY2--TRAFD1	1	1	CNPY2	2486	chr12:56708635:-	TRAFD1	11582	chr12:112568315:+	ONLY_REF_SPLICE	YES	416	68	0	0.03	0.0101	0.0101	CNPY2->canopy_FGF_signaling_regulator_2,chr12:56703626-56710120:-,TRAFD1->TRAF-type_zinc_finger_domain_containing_1,chr12:112563305-112591407:+	NCIH2452_PLEURA	0	0.03	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000092
NCIH2452_PLEURA	CTC-513N18.7--RP11-396F22.1	1	1	CTC-513N18.7	2862	chr19:20828490:-	RP11-396F22.1	9265	chr12:39303112:+	ONLY_REF_SPLICE	YES	0	6	1	0.25	0.0101	0.0101	CTC-513N18.7->chr19:20736598-20844389:-,RP11-396F22.1->chr12:39300253-39303394:+	NCIH2452_PLEURA	0.25	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	CTNND1--CACNA1S	1	1	CTNND1	2585	chr11:57529518:+	CACNA1S	63529	chr1:201013584:-	ONLY_REF_SPLICE	NO	318	0	0.01	1	0.0101	0.0101	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,CACNA1S->calcium_voltage-gated_channel_subunit_alpha1_S,chr1:201008642-201081694:-	NCIH2452_PLEURA	0.01	1	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000092
NCIH2452_PLEURA	DST--PRIM2	1	1	DST	9815	chr6:56600026:-	PRIM2	136069	chr6:57244699:+	ONLY_REF_SPLICE	YES	109	86	0.02	0.02	0.0101	0.0101	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Heart_-_Left_Ventricle=1},DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	NCIH2452_PLEURA	0.02	0.02	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000092
NCIH2452_PLEURA	ENO1--CANX	1	1	ENO1	5664	chr1:8930511:-	CANX	32859	chr5:179151658:+	ONLY_REF_SPLICE	YES	6436	3489	0	0	0.0101	0.0101	GTEx&tcga_normals:1/3694=0.03%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,CANX->calnexin,chr5:179105629-179157926:+	NCIH2452_PLEURA	0	0	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000092
NCIH2452_PLEURA	FGFRL1--CTBP1	1	1	FGFRL1	3629	chr4:1006352:+	CTBP1	23077	chr4:1222131:-	ONLY_REF_SPLICE	YES	36	442	0.05	0	0.0101	0.0101	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH2452_PLEURA	0	0.05	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000092
NCIH2452_PLEURA	HOOK3--ADAM32	1	1	HOOK3	2343	chr8:42761401:+	ADAM32	74204	chr8:39141105:+	ONLY_REF_SPLICE	YES	18	11	0.1	0.15	0.0101	0.0101	HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3,ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+	NCIH2452_PLEURA	0.1	0.15	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000092
NCIH2452_PLEURA	MRC2--PLXDC1	1	1	MRC2	6866	chr17:60749513:+	PLXDC1	40822	chr17:37243955:-	ONLY_REF_SPLICE	YES	515	0	0	1	0.0101	0.0101	MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2,PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1	NCIH2452_PLEURA	0	1	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000092
NCIH2452_PLEURA	NAMPT--BAIAP2L1	1	1	NAMPT	4136	chr7:105917469:-	BAIAP2L1	37593	chr7:97923423:-	ONLY_REF_SPLICE	YES	1017	146	0	0.01	0.0101	0.0101	NAMPT->chr7:105888731-105926772:-,nicotinamide_phosphoribosyltransferase,BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-	NCIH2452_PLEURA	0	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000092
NCIH2452_PLEURA	RALY--EIF2S2	1	1	RALY	3636	chr20:32619410:+	EIF2S2	18823	chr20:32693351:-	ONLY_REF_SPLICE	YES	452	918	0	0	0.0101	0.0101	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},NEIGHBORS_OVERLAP:+:-:[20010],RALY->RALY_heterogeneous_nuclear_ribonucleoprotein,chr20:32581452-32696114:+,EIF2S2->chr20:32676104-32700138:-,eukaryotic_translation_initiation_factor_2_subunit_beta	NCIH2452_PLEURA	0	0	0.0202	FALSE	0	1	0	5	0	FALSE	ACH-000092
NCIH2452_PLEURA	RP11-818F20.5--TXNRD1	1	1	RP11-818F20.5	1439	chr12:104674062:-	TXNRD1	20321	chr12:104705068:+	ONLY_REF_SPLICE	YES	149	3591	0.01	0	0.0101	0.0101	NEIGHBORS_OVERLAP:-:+:[18408],RP11-818F20.5->chr12:104656092-104674500:-,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	NCIH2452_PLEURA	0	0.01	0.0202	FALSE	0	0	0	3	0	FALSE	ACH-000092
NCIH2452_PLEURA	RSPRY1--FAM192A	1	1	RSPRY1	1315	chr16:57220363:+	FAM192A	29396	chr16:57207781:-	ONLY_REF_SPLICE	NO	52	212	0.04	0.01	0.0101	0.0101	LOCAL_INVERSION:+:-:[21],RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	NCIH2452_PLEURA	0.01	0.04	0.0202	FALSE	0	0	0	2	0	FALSE	ACH-000092
NCIH2452_PLEURA	RSPRY1--FAM192A	1	1	RSPRY1	1649	chr16:57220697:+	FAM192A	29396	chr16:57207781:-	ONLY_REF_SPLICE	YES	122	212	0.02	0.01	0.0101	0.0101	LOCAL_INVERSION:+:-:[21],RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	NCIH2452_PLEURA	0.01	0.02	0.0202	FALSE	0	0	0	2	0	FALSE	ACH-000092
NCIH2452_PLEURA	SF1--FUS	1	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	348	1043	0.01	0	0.0101	0.0101	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH2452_PLEURA	0	0.01	0.0202	FALSE	5	20	0	32	0	FALSE	ACH-000092
ONCODG1_OVARY	ABCD3--RP11-148B18.3	465	193	ABCD3	1212	chr1:94884144:+	RP11-148B18.3	30348	chr1:94798865:+	INCL_NON_REF_SPLICE	YES	66	0	0.91	1	4.0502	1.681	LOCAL_REARRANGEMENT:+:[83529],ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+,RP11-148B18.3->chr1:94798823-94800404:+	ONCODG1_OVARY	0.91	1	5.7312	TRUE	0	2	0	2	2	TRUE	ACH-000013
ONCODG1_OVARY	SLC25A44--DAP3	404	85	SLC25A44	1159	chr1:156164038:+	DAP3	17521	chr1:155679564:+	ONLY_REF_SPLICE	YES	33	51	0.94	0.91	3.5189	0.7404	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	ONCODG1_OVARY	0.91	0.94	4.2593	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	GAPVD1--RABEPK	332	121	GAPVD1	1166	chr9:128024238:+	RABEPK	51440	chr9:127990189:+	ONLY_REF_SPLICE	YES	38	86	0.92	0.84	2.8917	1.0539	LOCAL_REARRANGEMENT:+:[27636],GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,RABEPK->Rab9_effector_protein_with_kelch_motifs,chr9:127962821-127996437:+	ONCODG1_OVARY	0.84	0.92	3.9456	TRUE	0	1	0	1	1	TRUE	ACH-000013
ONCODG1_OVARY	MBP--RP11-723G8.2	270	72	MBP	10678	chr18:74778254:-	RP11-723G8.2	43134	chr18:69400083:-	ONLY_REF_SPLICE	YES	40	0	0.9	1	2.3517	0.6271	MBP->chr18:74690783-74845639:-,myelin_basic_protein,RP11-723G8.2->chr18:69399851-69455364:-	ONCODG1_OVARY	0.9	1	2.9788	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	CNN2--ARID3A	226	54	CNN2	4331	chr19:1032695:+	ARID3A	17446	chr19:960092:+	ONLY_REF_SPLICE	YES	578	9	0.33	0.97	1.9685	0.4703	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:+:[50359],CNN2->calponin_2,chr19:1026298-1039068:+,ARID3A->AT-rich_interaction_domain_3A,chr19:925781-975939:+	ONCODG1_OVARY	0.33	0.97	2.4388	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	FCHSD2--FAM168A	218	50	FCHSD2	16460	chr11:72598515:-	FAM168A	29774	chr11:73179537:-	ONLY_REF_SPLICE	YES	41	54	0.87	0.83	1.8988	0.4355	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A	ONCODG1_OVARY	0.83	0.87	2.3343	TRUE	0	1	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	TIMM23B--LINC00843	208	36	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.99	1.8117	0.3136	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ONCODG1_OVARY	0.99	1	2.1253	TRUE	508	994	45	981	0	FALSE	ACH-000013
ONCODG1_OVARY	CLIC4--SRRM1	170	72	CLIC4	1269	chr1:25072116:+	SRRM1	34974	chr1:24995614:+	ONLY_REF_SPLICE	YES	275	81	0.47	0.75	1.4807	0.6271	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[72090],CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	ONCODG1_OVARY	0.47	0.75	2.1078	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	GAPVD1--RABEPK	131	141	GAPVD1	3365	chr9:128031263:+	RABEPK	51440	chr9:127990189:+	ONLY_REF_SPLICE	YES	36	86	0.88	0.76	1.141	1.2281	LOCAL_REARRANGEMENT:+:[27636],GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,RABEPK->Rab9_effector_protein_with_kelch_motifs,chr9:127962821-127996437:+	ONCODG1_OVARY	0.76	0.88	2.3691	TRUE	0	1	0	1	1	TRUE	ACH-000013
ONCODG1_OVARY	KANSL1--ARL17B	148	26	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	18	16	0.91	0.92	1.2891	0.2265	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	ONCODG1_OVARY	0.91	0.92	1.5156	TRUE	181	1564	124	196	0	FALSE	ACH-000013
ONCODG1_OVARY	STARD10--FCHSD2	138	27	STARD10	6569	chr11:72492020:-	FCHSD2	27315	chr11:72613683:-	ONLY_REF_SPLICE	YES	75	57	0.69	0.74	1.202	0.2352	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[43064],STARD10->StAR_related_lipid_transfer_domain_containing_10,chr11:72465774-72504726:-,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	ONCODG1_OVARY	0.69	0.74	1.4372	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	SLC38A1--COL2A1	124	19	SLC38A1	8733	chr12:46622936:-	COL2A1	51378	chr12:48373845:-	ONLY_REF_SPLICE	YES	281	1	0.34	0.99	1.08	0.1655	SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1,COL2A1->chr12:48366748-48398269:-,collagen_type_II_alpha_1	ONCODG1_OVARY	0.34	0.99	1.2455	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	CCDC6--ANK3	122	23	CCDC6	1535	chr10:61665880:-	ANK3	50361	chr10:61898845:-	ONLY_REF_SPLICE	YES	88	34	0.62	0.81	1.0626	0.2003	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	ONCODG1_OVARY	0.62	0.81	1.2629	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	TIMM23--RP11-464F9.1	121	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.0539	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ONCODG1_OVARY	1	1	1.0539	TRUE	519	3926	326	965	0	FALSE	ACH-000013
ONCODG1_OVARY	RAPGEF3--HDAC7	113	20	RAPGEF3	16058	chr12:48134698:-	HDAC7	39387	chr12:48185091:-	ONLY_REF_SPLICE	YES	175	208	0.43	0.39	0.9842	0.1742	LOCAL_REARRANGEMENT:-:[11682],RAPGEF3->Rap_guanine_nucleotide_exchange_factor_3,chr12:48128455-48164823:-,HDAC7->chr12:48176505-48226915:-,histone_deacetylase_7	ONCODG1_OVARY	0.39	0.43	1.1584	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	C1orf186--RP11-38J22.6	78	66	C1orf186	2783	chr1:206284908:-	RP11-38J22.6	18329	chr1:206288349:-	ONLY_REF_SPLICE	YES	473	1	0.23	0.99	0.6794	0.5749	NEIGHBORS_OVERLAP:-:-:[491],C1orf186->chr1:206238872-206288647:-,chromosome_1_open_reading_frame_186,RP11-38J22.6->chr1:206288156-206306131:-	ONCODG1_OVARY	0.23	0.99	1.2543	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	TSC2--MAPK8IP3	91	1	TSC2	1601	chr16:2098066:+	MAPK8IP3	49511	chr16:1808149:+	ONLY_REF_SPLICE	YES	0	16	1	0.85	0.7926	0.0087	TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2,MAPK8IP3->chr16:1756184-1820318:+,mitogen-activated_protein_kinase_8_interacting_protein_3	ONCODG1_OVARY	0.85	1	0.8013	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	EWSR1--ZNRF3	80	26	EWSR1	4997	chr22:29669853:+	ZNRF3	27691	chr22:29383064:+	ONLY_REF_SPLICE	YES	394	2	0.21	0.98	0.6968	0.2265	EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3	ONCODG1_OVARY	0.21	0.98	0.9233	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	HDAC7--VDR	81	15	HDAC7	8457	chr12:48191891:-	VDR	32992	chr12:48258960:-	ONLY_REF_SPLICE	YES	204	7	0.32	0.93	0.7055	0.1307	LOCAL_REARRANGEMENT:-:[8405],HDAC7->chr12:48176505-48226915:-,histone_deacetylase_7,VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor	ONCODG1_OVARY	0.32	0.93	0.8362	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	37	190	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	6936	0	0.03	1	0.3223	1.6549	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.03	1	1.9772	FALSE	344	827	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	SAMD8--DUSP13	77	26	SAMD8	5140	chr10:76924498:+	DUSP13	23551	chr10:76857643:-	ONLY_REF_SPLICE	YES	131	17	0.44	0.86	0.6707	0.2265	{Klijn_CCL:Ovary=1},NEIGHBORS_OVERLAP:+:-:[9635],SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,DUSP13->chr10:76854192-76868979:-,dual_specificity_phosphatase_13	ONCODG1_OVARY	0.44	0.86	0.8972	FALSE	0	0	0	2	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	7	266	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	23	0	0.92	1	0.061	2.3169	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.92	1	2.3779	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	5	269	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	149	0	0.65	1	0.0436	2.343	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.65	1	2.3866	FALSE	344	827	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	5	268	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	NO	171	0	0.61	1	0.0436	2.3343	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.61	1	2.3779	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	7	260	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	15	0	0.95	1	0.061	2.2646	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.95	1	2.3256	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	5	267	MT-ND4	1170	chrM:10929:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	YES	25	0	0.92	1	0.0436	2.3256	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.92	1	2.3692	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	3	273	MT-ND4	1699	chrM:11458:+	MT-ND4L	5509	chrM:10600:+	INCL_NON_REF_SPLICE	YES	3782	0	0.07	1	0.0261	2.3779	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.07	1	2.404	FALSE	344	827	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	4	269	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	171	0	0.61	1	0.0348	2.343	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.61	1	2.3778	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	3	273	MT-ND4	1747	chrM:11506:+	MT-ND4L	5523	chrM:10614:+	INCL_NON_REF_SPLICE	YES	5271	0	0.05	1	0.0261	2.3779	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.05	1	2.404	FALSE	344	827	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	3	271	MT-ND4	1531	chrM:11290:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	964	0	0.22	1	0.0261	2.3604	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.22	1	2.3865	FALSE	344	827	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	NUP98--BEAN1	60	42	NUP98	1393	chr11:3818630:-	BEAN1	50933	chr16:66511463:+	ONLY_REF_SPLICE	YES	64	3	0.61	0.97	0.5226	0.3658	NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,BEAN1->brain_expressed,_associated_with_NEDD4,_1,chr16:66461200-66527432:+	ONCODG1_OVARY	0.61	0.97	0.8884	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	3	267	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	NO	27	0	0.91	1	0.0261	2.3256	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.91	1	2.3517	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	3	264	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	21	0	0.93	1	0.0261	2.2995	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.93	1	2.3256	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	AP000769.1--FRMD8	65	1	AP000769.1	1075	chr11:65222802:+	FRMD8	11705	chr11:65167207:+	ONLY_REF_SPLICE	YES	0	21	1	0.76	0.5662	0.0087	LOCAL_REARRANGEMENT:+:[41732],AP000769.1->chr11:65222728-65234028:+,FRMD8->FERM_domain_containing_8,Oncogene{Bushman},chr11:65154070-65180996:+	ONCODG1_OVARY	0.76	1	0.5749	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	51	34	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.4442	0.2961	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.97	1	0.7403	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	3	225	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	13	0	0.95	1	0.0261	1.9598	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.95	1	1.9859	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	AGO2--PTK2	57	1	AGO2	1135	chr8:141645584:-	PTK2	81792	chr8:141678523:-	ONLY_REF_SPLICE	YES	0	129	1	0.31	0.4965	0.0087	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[22281],AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	ONCODG1_OVARY	0.31	1	0.5052	TRUE	0	2	0	1	2	TRUE	ACH-000013
ONCODG1_OVARY	GAPVD1--RABEPK	26	121	GAPVD1	1167	chr9:128024239:+	RABEPK	51439	chr9:127990188:+	INCL_NON_REF_SPLICE	YES	40	100	0.79	0.6	0.2265	1.0539	LOCAL_REARRANGEMENT:+:[27636],GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,RABEPK->Rab9_effector_protein_with_kelch_motifs,chr9:127962821-127996437:+	ONCODG1_OVARY	0.6	0.79	1.2804	TRUE	0	1	0	1	1	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	7	192	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	11	0	0.95	1	0.061	1.6723	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.95	1	1.7333	FALSE	344	821	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	OR51S1--TP53I11	55	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4791	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	ONCODG1_OVARY	1	1	0.4791	TRUE	402	216	10	229	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	5	198	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	15	0	0.93	1	0.0436	1.7246	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.93	1	1.7682	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	SAMD8--DUSP13	50	16	SAMD8	5140	chr10:76924498:+	DUSP13	24725	chr10:76855553:-	ONLY_REF_SPLICE	YES	131	44	0.34	0.6	0.4355	0.1394	{Klijn_CCL:Ovary=1},NEIGHBORS_OVERLAP:+:-:[9635],SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,DUSP13->chr10:76854192-76868979:-,dual_specificity_phosphatase_13	ONCODG1_OVARY	0.34	0.6	0.5749	FALSE	0	0	0	2	0	FALSE	ACH-000013
ONCODG1_OVARY	SDC4--KIF24	50	10	SDC4	3286	chr20:43961663:-	KIF24	11709	chr9:34311369:-	ONLY_REF_SPLICE	YES	182	3	0.25	0.95	0.4355	0.0871	SDC4->Oncogene{Bushman},chr20:43953928-43977064:-,syndecan_4,KIF24->chr9:34252379-34329198:-,kinesin_family_member_24	ONCODG1_OVARY	0.25	0.95	0.5226	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	6	181	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	142	0	0.57	1	0.0523	1.5765	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.57	1	1.6288	FALSE	344	827	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	SLC25A44--DAP3	28	87	SLC25A44	1159	chr1:156164038:+	DAP3	16781	chr1:155678824:+	ONLY_REF_SPLICE	YES	33	37	0.78	0.76	0.2439	0.7578	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	ONCODG1_OVARY	0.76	0.78	1.0017	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	3	186	MT-ND4	1164	chrM:10923:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	23	0	0.89	1	0.0261	1.6201	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.89	1	1.6462	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	47	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	14133	5	0	0.91	0.4094	0.0174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.91	0.4268	FALSE	230	193	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	C18orf25--HAUS1	40	28	C18orf25	1778	chr18:43754296:+	HAUS1	19434	chr18:43698147:+	ONLY_REF_SPLICE	YES	71	82	0.49	0.45	0.3484	0.2439	LOCAL_REARRANGEMENT:+:[45220],C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+	ONCODG1_OVARY	0.45	0.49	0.5923	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	BOP1--DGAT1	44	7	BOP1	2339	chr8:145512776:-	DGAT1	18186	chr8:145540772:-	ONLY_REF_SPLICE	YES	81	30	0.39	0.63	0.3832	0.061	LOCAL_REARRANGEMENT:-:[24872],BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,DGAT1->chr8:145539954-145550573:-,diacylglycerol_O-acyltransferase_1	ONCODG1_OVARY	0.39	0.63	0.4442	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	SAMD8--DUSP13	32	38	SAMD8	5140	chr10:76924498:+	DUSP13	19755	chr10:76863855:-	ONLY_REF_SPLICE	YES	131	13	0.35	0.84	0.2787	0.331	{Klijn_CCL:Ovary=1},NEIGHBORS_OVERLAP:+:-:[9635],SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,DUSP13->chr10:76854192-76868979:-,dual_specificity_phosphatase_13	ONCODG1_OVARY	0.35	0.84	0.6097	FALSE	0	0	0	2	0	FALSE	ACH-000013
ONCODG1_OVARY	SVIL--MPP7	36	22	SVIL	5350	chr10:29946898:-	MPP7	72068	chr10:28378770:-	ONLY_REF_SPLICE	YES	10	18	0.85	0.76	0.3136	0.1916	SVIL->chr10:29746267-30025710:-,supervillin,MPP7->chr10:28339922-28623415:-,membrane_palmitoylated_protein_7	ONCODG1_OVARY	0.76	0.85	0.5052	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	37	14	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1760	7	0.03	0.88	0.3223	0.1219	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.03	0.88	0.4442	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	MSI2--RNF123	38	8	MSI2	25423	chr17:55674311:+	RNF123	52083	chr3:49734576:+	ONLY_REF_SPLICE	YES	99	39	0.32	0.54	0.331	0.0697	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,RNF123->chr3:49726932-49758962:+,ring_finger_protein_123	ONCODG1_OVARY	0.32	0.54	0.4007	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	23	64	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	13490	0	0.01	1	0.2003	0.5574	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.01	1	0.7577	FALSE	328	800	43	304	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	4	134	MT-ND4	1144	chrM:10903:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	21	0	0.87	1	0.0348	1.1672	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.87	1	1.202	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	RP11-123O10.4--GRIP1	36	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3136	0.0523	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ONCODG1_OVARY	1	1	0.3659	FALSE	416	2512	207	587	0	FALSE	ACH-000013
ONCODG1_OVARY	CACHD1--ROR1	35	9	CACHD1	28978	chr1:65145439:+	ROR1	41024	chr1:64516358:+	ONLY_REF_SPLICE	YES	16	2	0.73	0.96	0.3049	0.0784	{Klijn_CCL:Breast=1,Ovary=1},CACHD1->cache_domain_containing_1,chr1:64936428-65158741:+,ROR1->chr1:64239693-64647181:+,receptor_tyrosine_kinase-like_orphan_receptor_1	ONCODG1_OVARY	0.73	0.96	0.3833	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	4	133	MT-ND4	1756	chrM:11515:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	5635	0	0.02	1	0.0348	1.1584	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.02	1	1.1932	FALSE	344	827	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	C18orf25--HAUS1	34	12	C18orf25	1160	chr18:43753678:+	HAUS1	19434	chr18:43698147:+	ONLY_REF_SPLICE	YES	27	82	0.63	0.36	0.2961	0.1045	LOCAL_REARRANGEMENT:+:[45220],C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+	ONCODG1_OVARY	0.36	0.63	0.4006	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	GAPVD1--RABEPK	5	126	GAPVD1	2316	chr9:128025979:+	RABEPK	51440	chr9:127990189:+	ONLY_REF_SPLICE	YES	37	86	0.78	0.6	0.0436	1.0975	LOCAL_REARRANGEMENT:+:[27636],GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,RABEPK->Rab9_effector_protein_with_kelch_motifs,chr9:127962821-127996437:+	ONCODG1_OVARY	0.6	0.78	1.1411	TRUE	0	1	0	1	1	TRUE	ACH-000013
ONCODG1_OVARY	ITSN2--OTOF	34	4	ITSN2	2475	chr2:24550921:-	OTOF	57921	chr2:26739467:-	ONLY_REF_SPLICE	YES	3	0	0.93	1	0.2961	0.0348	ITSN2->chr2:24425733-24583583:-,intersectin_2,OTOF->Oncogene{Bushman},chr2:26680071-26781566:-,otoferlin	ONCODG1_OVARY	0.93	1	0.3309	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	ZNF654--HMGB2	35	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3049	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	ONCODG1_OVARY	1	1	0.3049	TRUE	0	0	0	518	0	FALSE	ACH-000013
ONCODG1_OVARY	SPEN--NEU1	33	5	SPEN	24484	chr1:16265371:+	NEU1	30525	chr6:31829227:-	ONLY_REF_SPLICE	YES	89	58	0.3	0.4	0.2874	0.0436	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,NEU1->chr6:31825436-31830683:-,neuraminidase_1_(lysosomal_sialidase)	ONCODG1_OVARY	0.3	0.4	0.331	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	SAMD8--DUSP13	27	28	SAMD8	5140	chr10:76924498:+	DUSP13	20959	chr10:76861719:-	ONLY_REF_SPLICE	YES	131	20	0.3	0.73	0.2352	0.2439	{Klijn_CCL:Ovary=1},NEIGHBORS_OVERLAP:+:-:[9635],SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,DUSP13->chr10:76854192-76868979:-,dual_specificity_phosphatase_13	ONCODG1_OVARY	0.3	0.73	0.4791	FALSE	0	0	0	2	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	29	15	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17556	7	0	0.86	0.2526	0.1307	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.86	0.3833	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	NPM1P24--SET	32	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2787	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ONCODG1_OVARY	1	1	0.2787	TRUE	0	0	0	434	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	28	11	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4346	66	0.01	0.37	0.2439	0.0958	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.01	0.37	0.3397	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	FBXO34--CDKN3	28	10	FBXO34	1235	chr14:55738255:+	CDKN3	14353	chr14:54866612:+	ONLY_REF_SPLICE	YES	0	20	1	0.66	0.2439	0.0871	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3	ONCODG1_OVARY	0.66	1	0.331	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	21	35	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1829	0.3049	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	1	1	0.4878	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	C1orf186--RP11-38J22.6	19	37	C1orf186	1543	chr1:206288105:-	RP11-38J22.6	18329	chr1:206288349:-	ONLY_REF_SPLICE	YES	471	1	0.11	0.98	0.1655	0.3223	NEIGHBORS_OVERLAP:-:-:[491],C1orf186->chr1:206238872-206288647:-,chromosome_1_open_reading_frame_186,RP11-38J22.6->chr1:206288156-206306131:-	ONCODG1_OVARY	0.11	0.98	0.4878	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	4	86	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	14	0	0.87	1	0.0348	0.7491	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.87	1	0.7839	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	ZNF580--SSC5D	25	2	ZNF580	1100	chr19:56146481:+	SSC5D	10166	chr19:56001665:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2178	0.0174	ZNF580->chr19:56146382-56154835:+,zinc_finger_protein_580,SSC5D->chr19:55999771-56030465:+,scavenger_receptor_cysteine_rich_family_member_with_5_domains	ONCODG1_OVARY	0.96	1	0.2352	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND6--MT-TE	24	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.209	0.0436	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ONCODG1_OVARY	1	1	0.2526	FALSE	499	1288	110	792	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	9	63	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	832	0	0.08	1	0.0784	0.5487	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.08	1	0.6271	FALSE	344	827	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	RAB11FIP4--NF1	24	2	RAB11FIP4	6818	chr17:29815290:+	NF1	32870	chr17:29483001:+	ONLY_REF_SPLICE	YES	9	26	0.74	0.5	0.209	0.0174	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[9508],RAB11FIP4->RAB11_family_interacting_protein_4,chr17:29718642-29865236:+,NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1	ONCODG1_OVARY	0.5	0.74	0.2264	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	RP11-973F15.1--RP11-94A24.1	23	6	RP11-973F15.1	3763	chr8:123682599:-	RP11-94A24.1	7870	chr8:123429261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2003	0.0523	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	ONCODG1_OVARY	1	1	0.2526	TRUE	0	2	0	7	2	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	19	19	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	3	599	0.93	0.06	0.1655	0.1655	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.06	0.93	0.331	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	ZBTB17--SLC22A15	22	4	ZBTB17	2237	chr1:16299534:-	SLC22A15	15148	chr1:116534652:+	ONLY_REF_SPLICE	YES	68	2	0.28	0.93	0.1916	0.0348	ZBTB17->chr1:16268364-16302627:-,zinc_finger_and_BTB_domain_containing_17,SLC22A15->chr1:116519119-116612675:+,solute_carrier_family_22_member_15	ONCODG1_OVARY	0.28	0.93	0.2264	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	13	38	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	515	0	0.09	1	0.1132	0.331	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.09	1	0.4442	FALSE	344	827	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	SAMD8--DUSP13	12	42	SAMD8	5140	chr10:76924498:+	DUSP13	17329	chr10:76867967:-	ONLY_REF_SPLICE	YES	131	7	0.29	0.89	0.1045	0.3658	{Klijn_CCL:Ovary=1},NEIGHBORS_OVERLAP:+:-:[9635],SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,DUSP13->chr10:76854192-76868979:-,dual_specificity_phosphatase_13	ONCODG1_OVARY	0.29	0.89	0.4703	FALSE	0	0	0	2	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	3	77	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	11	0	0.88	1	0.0261	0.6707	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.88	1	0.6968	FALSE	344	821	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	C1orf186--RP11-38J22.6	1	84	C1orf186	2783	chr1:206284908:-	RP11-38J22.6	17180	chr1:206289515:-	ONLY_REF_SPLICE	YES	473	0	0.15	1	0.0087	0.7316	NEIGHBORS_OVERLAP:-:-:[491],C1orf186->chr1:206238872-206288647:-,chromosome_1_open_reading_frame_186,RP11-38J22.6->chr1:206288156-206306131:-	ONCODG1_OVARY	0.15	1	0.7403	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	C1orf186--RP11-38J22.6	3	72	C1orf186	2783	chr1:206284908:-	RP11-38J22.6	18280	chr1:206288398:-	INCL_NON_REF_SPLICE	YES	473	1	0.14	0.99	0.0261	0.6271	NEIGHBORS_OVERLAP:-:-:[491],C1orf186->chr1:206238872-206288647:-,chromosome_1_open_reading_frame_186,RP11-38J22.6->chr1:206288156-206306131:-	ONCODG1_OVARY	0.14	0.99	0.6532	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	SPEN--NEU1	20	3	SPEN	23614	chr1:16264501:+	NEU1	30525	chr6:31829227:-	ONLY_REF_SPLICE	YES	50	58	0.32	0.28	0.1742	0.0261	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,NEU1->chr6:31825436-31830683:-,neuraminidase_1_(lysosomal_sialidase)	ONCODG1_OVARY	0.28	0.32	0.2003	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	10	42	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	8	0	0.87	1	0.0871	0.3658	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.87	1	0.4529	FALSE	344	821	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	11	37	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	150	0	0.24	1	0.0958	0.3223	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.24	1	0.4181	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	SPOCK2--MT-ND4L	16	17	SPOCK2	14318	chr10:73820619:-	MT-ND4L	19146	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2914	0	0.01	1	0.1394	0.1481	SPOCK2->chr10:73818793-73848790:-,sparc/osteonectin,_cwcv_and_kazal-like_domains_proteoglycan_(testican)_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.01	1	0.2875	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	PLXDC1--TAF13	20	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1742	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	ONCODG1_OVARY	1	1	0.1742	TRUE	7	10	0	216	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	5	59	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	23	0	0.74	1	0.0436	0.5139	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.74	1	0.5575	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	5	59	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	29	0	0.69	1	0.0436	0.5139	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.69	1	0.5575	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	GIGYF2--EIF4E2	17	10	GIGYF2	35151	chr2:233675579:+	EIF4E2	68619	chr2:233438703:+	INCL_NON_REF_SPLICE	YES	36	35	0.43	0.44	0.1481	0.0871	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,EIF4E2->chr2:233414762-233448354:+,eukaryotic_translation_initiation_factor_4E_family_member_2	ONCODG1_OVARY	0.43	0.44	0.2352	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	SAMD8--DUSP13	10	38	SAMD8	5140	chr10:76924498:+	DUSP13	18547	chr10:76865626:-	ONLY_REF_SPLICE	YES	131	11	0.27	0.81	0.0871	0.331	{Klijn_CCL:Ovary=1},NEIGHBORS_OVERLAP:+:-:[9635],SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,DUSP13->chr10:76854192-76868979:-,dual_specificity_phosphatase_13	ONCODG1_OVARY	0.27	0.81	0.4181	FALSE	0	0	0	2	0	FALSE	ACH-000013
ONCODG1_OVARY	WNK2--FGD3	19	2	WNK2	19520	chr9:96031028:+	FGD3	45709	chr9:95765207:+	ONLY_REF_SPLICE	YES	25	2	0.46	0.91	0.1655	0.0174	WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+,FGD3->FYVE,_RhoGEF_and_PH_domain_containing_3,chr9:95709733-95798518:+	ONCODG1_OVARY	0.46	0.91	0.1829	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	RP11-973F15.1--RP11-96B2.1	18	4	RP11-973F15.1	3763	chr8:123682599:-	RP11-96B2.1	7930	chr8:123499705:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1568	0.0348	RP11-973F15.1->chr8:123682624-123706345:-,RP11-96B2.1->chr8:123497754-123502054:-	ONCODG1_OVARY	1	1	0.1916	TRUE	0	2	0	4	2	TRUE	ACH-000013
ONCODG1_OVARY	UBN1--UBALD1	18	4	UBN1	8794	chr16:4911103:+	UBALD1	26627	chr16:4660556:-	ONLY_REF_SPLICE	YES	22	27	0.5	0.45	0.1568	0.0348	UBN1->chr16:4896666-4932361:+,ubinuclein_1,UBALD1->UBA_like_domain_containing_1,chr16:4658884-4665028:-	ONCODG1_OVARY	0.45	0.5	0.1916	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	ZNF580--SSC5D	16	12	ZNF580	1697	chr19:56147078:+	SSC5D	10166	chr19:56001665:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1394	0.1045	ZNF580->chr19:56146382-56154835:+,zinc_finger_protein_580,SSC5D->chr19:55999771-56030465:+,scavenger_receptor_cysteine_rich_family_member_with_5_domains	ONCODG1_OVARY	1	1	0.2439	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	C1orf186--RP11-38J22.6	5	55	C1orf186	1543	chr1:206288105:-	RP11-38J22.6	17180	chr1:206289515:-	ONLY_REF_SPLICE	YES	471	0	0.11	1	0.0436	0.4791	NEIGHBORS_OVERLAP:-:-:[491],C1orf186->chr1:206238872-206288647:-,chromosome_1_open_reading_frame_186,RP11-38J22.6->chr1:206288156-206306131:-	ONCODG1_OVARY	0.11	1	0.5227	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	AP000525.9--LA16c-60G3.6	18	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	16	0	0.56	1	0.1568	0.0174	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	ONCODG1_OVARY	0.56	1	0.1742	TRUE	0	42	0	133	42	FALSE	ACH-000013
ONCODG1_OVARY	NCAPD3--AP005135.2	17	6	NCAPD3	24410	chr11:134038812:-	AP005135.2	39870	chr11:134931841:-	ONLY_REF_SPLICE	YES	35	0	0.4	1	0.1481	0.0523	NCAPD3->chr11:134020014-134095348:-,non-SMC_condensin_II_complex_subunit_D3,AP005135.2->chr11:134931675-134945793:-	ONCODG1_OVARY	0.4	1	0.2004	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	7	44	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	14	0	0.78	1	0.061	0.3832	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.78	1	0.4442	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	3	59	MT-ND4	1144	chrM:10903:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	21	0	0.75	1	0.0261	0.5139	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.75	1	0.54	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	RARG--AAAS	17	3	RARG	5372	chr12:53621146:-	AAAS	18449	chr12:53714476:-	ONLY_REF_SPLICE	YES	55	98	0.27	0.17	0.1481	0.0261	LOCAL_REARRANGEMENT:-:[74476],RARG->Oncogene{Bushman},chr12:53604354-53626764:-,retinoic_acid_receptor_gamma,AAAS->aladin_WD_repeat_nucleoporin,chr12:53701240-53718648:-	ONCODG1_OVARY	0.17	0.27	0.1742	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	8	38	MT-ND4	1452	chrM:11211:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	359	0	0.11	1	0.0697	0.331	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.11	1	0.4007	FALSE	344	827	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	12	20	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	136	0	0.19	1	0.1045	0.1742	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.19	1	0.2787	FALSE	344	827	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	16	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14079	7	0	0.72	0.1394	0.0174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.72	0.1568	FALSE	230	198	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	12	18	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16804	66	0	0.31	0.1045	0.1568	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.31	0.2613	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	7	38	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	15058	0	0	1	0.061	0.331	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0	1	0.392	FALSE	343	822	44	305	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	4	50	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.0348	0.4355	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.95	1	0.4703	FALSE	344	821	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	C1orf186--RP11-38J22.6	2	57	C1orf186	1543	chr1:206288105:-	RP11-38J22.6	14621	chr1:206299802:-	ONLY_REF_SPLICE	YES	471	0	0.11	1	0.0174	0.4965	NEIGHBORS_OVERLAP:-:-:[491],C1orf186->chr1:206238872-206288647:-,chromosome_1_open_reading_frame_186,RP11-38J22.6->chr1:206288156-206306131:-	ONCODG1_OVARY	0.11	1	0.5139	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	10	25	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2878	66	0.01	0.35	0.0871	0.2178	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.01	0.35	0.3049	FALSE	216	209	16	281	0	FALSE	ACH-000013
ONCODG1_OVARY	EFNA2--OR7G2	16	0	EFNA2	1155	chr19:1286307:+	OR7G2	9191	chr19:9213935:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1394	0	EFNA2->chr19:1286153-1301430:+,ephrin_A2,OR7G2->chr19:9212945-9213982:-,olfactory_receptor_family_7_subfamily_G_member_2	ONCODG1_OVARY	1	1	0.1394	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	8	30	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	171	0	0.18	1	0.0697	0.2613	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.18	1	0.331	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	RP11-96H19.1--RP11-446N19.1	15	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.85	1	0.1307	0.0174	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ONCODG1_OVARY	0.85	1	0.1481	FALSE	515	4851	409	746	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	9	24	MT-ND4	1818	chrM:11577:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	16888	0	0	1	0.0784	0.209	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.2874	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	SLC25A44--DAP3	3	47	SLC25A44	1159	chr1:156164038:+	DAP3	18573	chr1:155686797:+	ONLY_REF_SPLICE	YES	33	224	0.6	0.18	0.0261	0.4094	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	ONCODG1_OVARY	0.18	0.6	0.4355	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	4	42	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0.3658	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	1	1	0.4006	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	TEX2--PRICKLE2	14	2	TEX2	8557	chr17:62289934:-	PRICKLE2	31716	chr3:64184643:-	ONLY_REF_SPLICE	YES	33	1	0.33	0.94	0.1219	0.0174	TEX2->chr17:62224587-62340661:-,testis_expressed_2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	ONCODG1_OVARY	0.33	0.94	0.1393	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	13	5	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16116	7	0	0.72	0.1132	0.0436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.72	0.1568	FALSE	231	205	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	5	37	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	156	0	0.21	1	0.0436	0.3223	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.21	1	0.3659	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	4	41	MT-ND5	2792	chrM:14128:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0.3571	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	1	1	0.3919	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	4	41	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0.3571	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	1	1	0.3919	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	9	20	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	2	1	0.94	0.97	0.0784	0.1742	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.94	0.97	0.2526	FALSE	344	821	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	6	32	MT-ND5	2644	chrM:13980:+	MT-ATP8	5855	chrM:8408:+	INCL_NON_REF_SPLICE	YES	1264	0	0.03	1	0.0523	0.2787	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.03	1	0.331	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	9	20	MT-ND5	2641	chrM:13977:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1325	7	0.02	0.81	0.0784	0.1742	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.02	0.81	0.2526	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	10	16	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	4222	0	0.01	1	0.0871	0.1394	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.01	1	0.2265	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	11	11	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18448	0	0	1	0.0958	0.0958	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.1916	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	RP11-680G10.1--GSE1	13	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	13	1	0.55	0.1132	0.0261	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ONCODG1_OVARY	0.55	1	0.1393	TRUE	465	1949	224	605	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	5	33	MT-ND4	2214	chrM:11973:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	5821	0	0.01	1	0.0436	0.2874	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.01	1	0.331	FALSE	222	211	16	282	0	FALSE	ACH-000013
ONCODG1_OVARY	PPFIBP1--SMCO2	13	1	PPFIBP1	1935	chr12:27677298:+	SMCO2	45492	chr12:27627719:+	ONLY_REF_SPLICE	YES	367	0	0.04	1	0.1132	0.0087	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	ONCODG1_OVARY	0.04	1	0.1219	TRUE	0	2	0	3	1	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	4	36	MT-ND4	2324	chrM:12083:+	MT-ATP8	5419	chrM:8406:+	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.0348	0.3136	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.93	1	0.3484	FALSE	209	205	15	279	0	FALSE	ACH-000013
ONCODG1_OVARY	PEF1--RP1-197B17.3	13	0	PEF1	1056	chr1:32110442:-	RP1-197B17.3	15308	chr12:48122670:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1132	0	PEF1->chr1:32095463-32110497:-,penta-EF-hand_domain_containing_1,RP1-197B17.3->chr12:48099868-48136077:+	ONCODG1_OVARY	1	1	0.1132	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	10	11	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	18787	0	0	1	0.0871	0.0958	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.1829	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	BMP7--ZBP1	12	2	BMP7	7812	chr20:55777531:-	ZBP1	24352	chr20:56190636:-	ONLY_REF_SPLICE	YES	462	10	0.03	0.58	0.1045	0.0174	BMP7->bone_morphogenetic_protein_7,chr20:55743804-55841685:-,ZBP1->Z-DNA_binding_protein_1,chr20:56178902-56195632:-	ONCODG1_OVARY	0.03	0.58	0.1219	TRUE	0	0	0	2	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	8	18	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	16968	941	0	0.03	0.0697	0.1568	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.03	0.2265	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	4	33	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	15593	0	0	1	0.0348	0.2874	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.3222	FALSE	231	215	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND6--MT-TE	4	33	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0.2874	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ONCODG1_OVARY	1	1	0.3222	FALSE	499	1288	110	792	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	9	12	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	18662	0	0	1	0.0784	0.1045	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.1829	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	RP11-534L20.5--EPHA2	11	4	RP11-534L20.5	1422	chr1:206677702:+	EPHA2	18460	chr1:16451485:-	INCL_NON_REF_SPLICE	YES	0	395	1	0.04	0.0958	0.0348	RP11-534L20.5->chr1:206677281-206677789:+,EPHA2->EPH_receptor_A2,Oncogene{Bushman},chr1:16450832-16482582:-	ONCODG1_OVARY	0.04	1	0.1306	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	35	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	NO	52	0	0.42	1	0.0261	0.3049	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.42	1	0.331	FALSE	213	207	15	279	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	4	31	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	16198	0	0	1	0.0348	0.27	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.3048	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	3	35	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0.3049	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	1	1	0.331	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	11	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14079	66	0	0.16	0.0958	0.0174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.16	0.1132	FALSE	230	198	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	34	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1520	0	0.02	1	0.0261	0.2961	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.02	1	0.3222	FALSE	216	209	16	281	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	11	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14192	66	0	0.16	0.0958	0.0174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.16	0.1132	FALSE	230	198	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND6--MT-TE	9	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0784	0.0871	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ONCODG1_OVARY	0.95	1	0.1655	FALSE	499	1288	110	792	0	FALSE	ACH-000013
ONCODG1_OVARY	TSPAN9--TEAD4	11	2	TSPAN9	2166	chr12:3192885:+	TEAD4	21172	chr12:3103904:+	ONLY_REF_SPLICE	YES	36	67	0.27	0.16	0.0958	0.0174	LOCAL_REARRANGEMENT:+:[36682],TSPAN9->chr12:3186521-3395730:+,tetraspanin_9,TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+	ONCODG1_OVARY	0.16	0.27	0.1132	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	3	33	MT-ND5	2749	chrM:14085:+	MT-ATP8	5896	chrM:8449:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0.2874	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	1	1	0.3135	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	3	33	MT-ND5	2642	chrM:13978:+	MT-ATP8	5814	chrM:8367:+	INCL_NON_REF_SPLICE	YES	1311	0	0.03	1	0.0261	0.2874	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.03	1	0.3135	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND3--MT-ATP8	11	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0958	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	1	1	0.0958	FALSE	351	233	23	137	0	FALSE	ACH-000013
ONCODG1_OVARY	STARD10--FCHSD2	9	8	STARD10	6482	chr11:72492107:-	FCHSD2	27315	chr11:72613683:-	ONLY_REF_SPLICE	YES	49	57	0.26	0.23	0.0784	0.0697	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[43064],STARD10->StAR_related_lipid_transfer_domain_containing_10,chr11:72465774-72504726:-,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	ONCODG1_OVARY	0.23	0.26	0.1481	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	AP000769.1--FRMD8	10	3	AP000769.1	1325	chr11:65223052:+	FRMD8	11705	chr11:65167207:+	ONLY_REF_SPLICE	YES	1	21	0.93	0.38	0.0871	0.0261	LOCAL_REARRANGEMENT:+:[41732],AP000769.1->chr11:65222728-65234028:+,FRMD8->FERM_domain_containing_8,Oncogene{Bushman},chr11:65154070-65180996:+	ONCODG1_OVARY	0.38	0.93	0.1132	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	5	23	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4	7	0.88	0.8	0.0436	0.2003	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.8	0.88	0.2439	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	NDUFC2--MT-ND2	10	3	NDUFC2	1530	chr11:77790736:-	MT-ND2	9410	chrM:5227:+	INCL_NON_REF_SPLICE	YES	3554	10842	0	0	0.0871	0.0261	HGNC_GENEFAM,NDUFC2->NADH:ubiquinone_oxidoreductase_subunit_C2,chr11:77779350-77791265:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	ONCODG1_OVARY	0	0	0.1132	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	NT5C2--PCGF6	10	3	NT5C2	3325	chr10:104934615:-	PCGF6	37447	chr10:105063718:-	ONLY_REF_SPLICE	YES	98	32	0.12	0.29	0.0871	0.0261	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},NT5C2->5'-nucleotidase,_cytosolic_II,chr10:104845940-104953056:-,PCGF6->chr10:105062553-105110891:-,polycomb_group_ring_finger_6	ONCODG1_OVARY	0.12	0.29	0.1132	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MRPL12--OGFOD3	10	2	MRPL12	3668	chr17:79674243:+	OGFOD3	13844	chr17:80361966:-	INCL_NON_REF_SPLICE	YES	354	92	0.03	0.12	0.0871	0.0174	MRPL12->chr17:79670387-79674556:+,mitochondrial_ribosomal_protein_L12,OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-	ONCODG1_OVARY	0.03	0.12	0.1045	TRUE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	UBE2O--RHBDF2	10	2	UBE2O	1482	chr17:74448807:-	RHBDF2	21121	chr17:74483991:-	ONLY_REF_SPLICE	YES	3	27	0.8	0.31	0.0871	0.0174	LOCAL_REARRANGEMENT:-:[17685],UBE2O->chr17:74385532-74449288:-,ubiquitin_conjugating_enzyme_E2_O,RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila)	ONCODG1_OVARY	0.31	0.8	0.1045	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MED9--C17orf76-AS1	10	1	MED9	1280	chr17:17380579:+	C17orf76-AS1	16655	chr17:16373616:+	ONLY_REF_SPLICE	YES	76	14	0.13	0.44	0.0871	0.0087	MED9->chr17:17380300-17396540:+,mediator_complex_subunit_9,C17orf76-AS1->chr17:16342136-16381992:+	ONCODG1_OVARY	0.13	0.44	0.0958	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	4	24	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15909	66	0	0.3	0.0348	0.209	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.3	0.2438	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	9	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.93	0.0784	0.0348	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.93	1	0.1132	FALSE	344	821	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0871	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ONCODG1_OVARY	1	1	0.0871	TRUE	0	0	0	434	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	27	MT-ND4	1903	chrM:11662:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	NO	16843	0	0	1	0.0261	0.2352	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.2613	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	4	23	MT-ND5	2247	chrM:13583:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	1756	0	0.02	1	0.0348	0.2003	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.02	1	0.2351	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	NCAPD3--AP005135.2	8	7	NCAPD3	24410	chr11:134038812:-	AP005135.2	38612	chr11:134944265:-	ONLY_REF_SPLICE	YES	35	0	0.3	1	0.0697	0.061	NCAPD3->chr11:134020014-134095348:-,non-SMC_condensin_II_complex_subunit_D3,AP005135.2->chr11:134931675-134945793:-	ONCODG1_OVARY	0.3	1	0.1307	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	CNN2--ARID3A	1	34	CNN2	4298	chr19:1032662:+	ARID3A	17446	chr19:960092:+	ONLY_REF_SPLICE	NO	552	9	0.06	0.8	0.0087	0.2961	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:+:[50359],CNN2->calponin_2,chr19:1026298-1039068:+,ARID3A->AT-rich_interaction_domain_3A,chr19:925781-975939:+	ONCODG1_OVARY	0.06	0.8	0.3048	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	FAR2--MKX	9	2	FAR2	14495	chr12:29464883:+	MKX	32060	chr10:27964483:-	ONLY_REF_SPLICE	YES	25	3	0.31	0.79	0.0784	0.0174	{Klijn_CCL:Ovary=1},FAR2->chr12:29302036-29493913:+,fatty_acyl-CoA_reductase_2,MKX->chr10:27961804-28034989:-,mohawk_homeobox	ONCODG1_OVARY	0.31	0.79	0.0958	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	4	22	MT-ND5	2290	chrM:13626:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1372	0	0.02	1	0.0348	0.1916	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.02	1	0.2264	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	3	26	MT-ND5	2509	chrM:13845:+	MT-ATP8	5817	chrM:8370:+	INCL_NON_REF_SPLICE	YES	1466	0	0.02	1	0.0261	0.2265	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.02	1	0.2526	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	PSMA7--LAMA5	9	2	PSMA7	3093	chr20:60715874:-	LAMA5	40377	chr20:60892834:-	ONLY_REF_SPLICE	YES	1127	340	0.01	0.03	0.0784	0.0174	PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7,LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5	ONCODG1_OVARY	0.01	0.03	0.0958	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	FBXO34--CDKN3	7	9	FBXO34	1235	chr14:55738255:+	CDKN3	15436	chr14:54868242:+	ONLY_REF_SPLICE	YES	0	207	1	0.07	0.061	0.0784	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3	ONCODG1_OVARY	0.07	1	0.1394	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	9	0	MT-ND4	1003	chrM:10762:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0784	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	1	1	0.0784	FALSE	230	189	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	6	12	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	18222	0	0	1	0.0523	0.1045	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.1568	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	THAP4--AC114730.8	9	0	THAP4	1509	chr2:242576356:-	AC114730.8	15641	chr2:242674219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0784	0	LOCAL_REARRANGEMENT:-:[97266],THAP4->THAP_domain_containing_4,chr2:242523820-242576864:-,AC114730.8->chr2:242674130-242674913:-	ONCODG1_OVARY	1	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	ZFX--MAP7D2	9	0	ZFX	1622	chrX:24167911:+	MAP7D2	25787	chrX:20082923:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0784	0	ZFX->chrX:24167290-24234372:+,zinc_finger_protein,_X-linked,MAP7D2->MAP7_domain_containing_2,chrX:20024831-20135035:-	ONCODG1_OVARY	1	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	GAPVD1--RABEPK	4	19	GAPVD1	3365	chr9:128031263:+	RABEPK	52590	chr9:127994875:+	ONLY_REF_SPLICE	YES	36	108	0.39	0.18	0.0348	0.1655	LOCAL_REARRANGEMENT:+:[27636],GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,RABEPK->Rab9_effector_protein_with_kelch_motifs,chr9:127962821-127996437:+	ONCODG1_OVARY	0.18	0.39	0.2003	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	23	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	15909	224	0	0.1	0.0261	0.2003	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.1	0.2264	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	FBXO34--CDKN3	6	10	FBXO34	1235	chr14:55738255:+	CDKN3	14358	chr14:54866617:+	INCL_NON_REF_SPLICE	YES	0	20	1	0.44	0.0523	0.0871	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3	ONCODG1_OVARY	0.44	1	0.1394	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND3--MT-ATP8	8	2	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	60	7	0.14	0.59	0.0697	0.0174	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.14	0.59	0.0871	FALSE	351	233	23	137	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	8	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14133	7	0	0.59	0.0697	0.0174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.59	0.0871	FALSE	230	193	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	5	14	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	17402	1705	0	0.01	0.0436	0.1219	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.01	0.1655	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	3	22	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4	66	0.86	0.27	0.0261	0.1916	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.27	0.86	0.2177	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	CTD-2215E18.1--LNPEP	8	1	CTD-2215E18.1	3466	chr5:96438798:+	LNPEP	22633	chr5:96341777:+	ONLY_REF_SPLICE	YES	1	46	0.9	0.16	0.0697	0.0087	LOCAL_REARRANGEMENT:+:[51560],CTD-2215E18.1->chr5:96424779-96519354:+,LNPEP->Oncogene{Bushman},chr5:96271098-96373219:+,leucyl/cystinyl_aminopeptidase	ONCODG1_OVARY	0.16	0.9	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	21	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	17557	0	0	1	0.0261	0.1829	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.209	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	RAB11FIP4--NF1	8	1	RAB11FIP4	4466	chr17:29761140:+	NF1	32870	chr17:29483001:+	ONLY_REF_SPLICE	YES	4	26	0.69	0.26	0.0697	0.0087	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[9508],RAB11FIP4->RAB11_family_interacting_protein_4,chr17:29718642-29865236:+,NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1	ONCODG1_OVARY	0.26	0.69	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	C18orf25--HAUS1	1	28	C18orf25	3563	chr18:43796561:+	HAUS1	19434	chr18:43698147:+	ONLY_REF_SPLICE	NO	104	82	0.22	0.26	0.0087	0.2439	LOCAL_REARRANGEMENT:+:[45220],C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+	ONCODG1_OVARY	0.22	0.26	0.2526	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	CNNM2--GBF1	8	0	CNNM2	2809	chr10:104679858:+	GBF1	52141	chr10:104139278:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0697	0	CNNM2->chr10:104678050-104849978:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_2,GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1	ONCODG1_OVARY	1	1	0.0697	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	FCHSD2--FAM168A	2	24	FCHSD2	16460	chr11:72598515:-	FAM168A	30862	chr11:73141815:-	ONLY_REF_SPLICE	YES	41	41	0.39	0.39	0.0174	0.209	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A	ONCODG1_OVARY	0.39	0.39	0.2264	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-CO1--MT-ND1	7	4	MT-CO1	1653	chrM:6556:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	19518	7009	0	0	0.061	0.0348	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	ONCODG1_OVARY	0	0	0.0958	FALSE	39	30	6	19	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-CO1--MT-ND1	8	0	MT-CO1	1324	chrM:6227:+	MT-ND1	5558	chrM:3322:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0697	0	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	ONCODG1_OVARY	1	1	0.0697	FALSE	39	29	6	19	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	5	12	MT-ND4	1566	chrM:11325:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	NO	19818	599	0	0.03	0.0436	0.1045	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.03	0.1481	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	20	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	16886	0	0	1	0.0261	0.1742	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.2003	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	20	MT-ND4	1903	chrM:11662:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	NO	16843	224	0	0.09	0.0261	0.1742	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.09	0.2003	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	3	20	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	168	0	0.12	1	0.0261	0.1742	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	0.12	1	0.2003	FALSE	344	826	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	4	16	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	2243	0	0.01	1	0.0348	0.1394	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.01	1	0.1742	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	SRP68--ST6GALNAC1	8	0	SRP68	7069	chr17:74056389:-	ST6GALNAC1	25820	chr17:74633818:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0697	0	SRP68->chr17:74035184-74068734:-,signal_recognition_particle_68,ST6GALNAC1->Oncogene{Bushman},ST6_N-acetylgalactosaminide_alpha-2,6-sialyltransferase_1,chr17:74620843-74639920:-	ONCODG1_OVARY	1	1	0.0697	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	C18orf25--HAUS1	6	7	C18orf25	1778	chr18:43754296:+	HAUS1	20728	chr18:43699892:+	ONLY_REF_SPLICE	YES	71	67	0.15	0.16	0.0523	0.061	LOCAL_REARRANGEMENT:+:[45220],C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+	ONCODG1_OVARY	0.15	0.16	0.1133	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-CO1--MT-ND1	7	3	MT-CO1	1577	chrM:6480:+	MT-ND1	5559	chrM:3323:+	INCL_NON_REF_SPLICE	YES	17162	0	0	1	0.061	0.0261	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	ONCODG1_OVARY	0	1	0.0871	FALSE	39	30	6	19	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	7	3	MT-ND5	1248	chrM:12584:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4023	7	0	0.59	0.061	0.0261	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.59	0.0871	FALSE	42	35	7	104	0	FALSE	ACH-000013
ONCODG1_OVARY	STARD10--FCHSD2	5	11	STARD10	6569	chr11:72492020:-	FCHSD2	29483	chr11:72600990:-	ONLY_REF_SPLICE	YES	75	48	0.18	0.25	0.0436	0.0958	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[43064],STARD10->StAR_related_lipid_transfer_domain_containing_10,chr11:72465774-72504726:-,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	ONCODG1_OVARY	0.18	0.25	0.1394	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	DENND4B--JTB	7	2	DENND4B	17251	chr1:153902744:-	JTB	23872	chr1:153947311:-	INCL_NON_REF_SPLICE	YES	50	322	0.15	0.03	0.061	0.0174	LOCAL_REARRANGEMENT:-:[27573],DENND4B->DENN_domain_containing_4B,chr1:153901977-153919172:-,JTB->chr1:153946745-153950164:-,jumping_translocation_breakpoint	ONCODG1_OVARY	0.03	0.15	0.0784	TRUE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	3	18	MT-ND5	2807	chrM:14143:+	MT-ATP8	5935	chrM:8488:+	INCL_NON_REF_SPLICE	YES	0	1081	1	0.02	0.0261	0.1568	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.02	1	0.1829	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	4	13	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	17556	1007	0	0.02	0.0348	0.1132	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.02	0.148	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	4	13	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	NO	17486	1081	0	0.02	0.0348	0.1132	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.02	0.148	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND6--MT-TE	6	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0523	0.0436	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ONCODG1_OVARY	1	1	0.0959	FALSE	499	1288	110	792	0	FALSE	ACH-000013
ONCODG1_OVARY	TSC2--MAPK8IP3	7	1	TSC2	1601	chr16:2098066:+	MAPK8IP3	51321	chr16:1809959:+	ONLY_REF_SPLICE	YES	0	16	1	0.33	0.061	0.0087	TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2,MAPK8IP3->chr16:1756184-1820318:+,mitogen-activated_protein_kinase_8_interacting_protein_3	ONCODG1_OVARY	0.33	1	0.0697	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	GAPVD1--RABEPK	3	16	GAPVD1	1166	chr9:128024238:+	RABEPK	52590	chr9:127994875:+	ONLY_REF_SPLICE	YES	38	108	0.33	0.15	0.0261	0.1394	LOCAL_REARRANGEMENT:+:[27636],GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,RABEPK->Rab9_effector_protein_with_kelch_motifs,chr9:127962821-127996437:+	ONCODG1_OVARY	0.15	0.33	0.1655	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	7	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	1	1	0.061	FALSE	344	821	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	7	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	1	1	0.061	FALSE	344	821	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	3	16	MT-ND5	2641	chrM:13977:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	1325	1007	0.01	0.02	0.0261	0.1394	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.01	0.02	0.1655	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	RP11-444D3.1--SOX5	7	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.061	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	ONCODG1_OVARY	1	1	0.061	TRUE	477	1352	189	275	0	FALSE	ACH-000013
ONCODG1_OVARY	RP11-476K15.1--CTD-2015H3.2	6	4	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0523	0.0348	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	ONCODG1_OVARY	0.91	1	0.0871	FALSE	0	46	0	73	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	15	MT-ND4	1779	chrM:11538:+	MT-ATP8	5480	chrM:8467:+	INCL_NON_REF_SPLICE	YES	17450	6	0	0.75	0.0261	0.1307	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.75	0.1568	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	3	15	MT-ND5	2449	chrM:13785:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1140	66	0.02	0.21	0.0261	0.1307	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.02	0.21	0.1568	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND6--MT-TE	3	15	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0.1307	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ONCODG1_OVARY	1	1	0.1568	FALSE	499	1288	110	792	0	FALSE	ACH-000013
ONCODG1_OVARY	NCAPD3--AP005135.2	6	3	NCAPD3	23272	chr11:134046202:-	AP005135.2	39870	chr11:134931841:-	ONLY_REF_SPLICE	YES	28	0	0.24	1	0.0523	0.0261	NCAPD3->chr11:134020014-134095348:-,non-SMC_condensin_II_complex_subunit_D3,AP005135.2->chr11:134931675-134945793:-	ONCODG1_OVARY	0.24	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	ATP6V0D2--CTA-392E5.1	6	2	ATP6V0D2	6195	chr8:87111337:+	CTA-392E5.1	21642	chr8:86920542:+	ONLY_REF_SPLICE	YES	19	28	0.3	0.22	0.0523	0.0174	LOCAL_REARRANGEMENT:+:[36240],ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+,CTA-392E5.1->chr8:86851934-86963312:+	ONCODG1_OVARY	0.22	0.3	0.0697	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	BCS1L--POLR1A	6	2	BCS1L	4916	chr2:219527402:+	POLR1A	20491	chr2:86297395:-	ONLY_REF_SPLICE	YES	56	23	0.12	0.26	0.0523	0.0174	BCS1L->BCS1_homolog,_ubiquinol-cytochrome_c_reductase_complex_chaperone,chr2:219523487-219528166:+,POLR1A->chr2:86247339-86333278:-,polymerase_(RNA)_I_subunit_A	ONCODG1_OVARY	0.12	0.26	0.0697	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	6	2	MT-ND4	1164	chrM:10923:+	MT-ATP8	5389	chrM:8376:+	INCL_NON_REF_SPLICE	YES	11670	0	0	1	0.0523	0.0174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.0697	FALSE	230	193	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	5	6	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	16784	2053	0	0.01	0.0436	0.0523	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.01	0.0959	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	AFAP1--ABLIM2	6	1	AFAP1	1271	chr4:7941383:-	ABLIM2	60984	chr4:7985071:-	ONLY_REF_SPLICE	YES	45	2	0.13	0.78	0.0523	0.0087	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	ONCODG1_OVARY	0.13	0.78	0.061	TRUE	0	1	0	3	1	TRUE	ACH-000013
ONCODG1_OVARY	AFAP1--ABLIM2	6	1	AFAP1	1271	chr4:7941383:-	ABLIM2	59719	chr4:7986620:-	ONLY_REF_SPLICE	YES	45	3	0.13	0.7	0.0523	0.0087	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	ONCODG1_OVARY	0.13	0.7	0.061	TRUE	0	1	0	2	1	TRUE	ACH-000013
ONCODG1_OVARY	FCHSD2--FAM168A	1	21	FCHSD2	15354	chr11:72600874:-	FAM168A	29774	chr11:73179537:-	ONLY_REF_SPLICE	NO	42	54	0.34	0.29	0.0087	0.1829	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A	ONCODG1_OVARY	0.29	0.34	0.1916	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	INTS4--GAB2	6	1	INTS4	30020	chr11:77590034:-	GAB2	44770	chr11:77934722:-	INCL_NON_REF_SPLICE	YES	168	40	0.04	0.15	0.0523	0.0087	Cosmic{samples=2,mutations=2,papers=1},Mitelman{CA_ad=1},INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	ONCODG1_OVARY	0.04	0.15	0.061	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	KMT2E--LHFPL3	6	1	KMT2E	14975	chr7:104719410:+	LHFPL3	39671	chr7:104546634:+	ONLY_REF_SPLICE	YES	29	0	0.19	1	0.0523	0.0087	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,LHFPL3->chr7:103969104-104549001:+,lipoma_HMGIC_fusion_partner-like_3	ONCODG1_OVARY	0.19	1	0.061	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	5	5	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	18093	1705	0	0.01	0.0436	0.0436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.01	0.0872	FALSE	231	205	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	6	1	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	14608	598	0	0.01	0.0523	0.0087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.01	0.061	FALSE	231	204	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	RBM38--RP4-813D12.3	6	1	RBM38	2371	chr20:55967833:+	RP4-813D12.3	13625	chr20:55857627:+	INCL_NON_REF_SPLICE	YES	303	17	0.02	0.29	0.0523	0.0087	RBM38->RNA_binding_motif_protein_38,chr20:55966463-55984389:+,RP4-813D12.3->chr20:55841853-55858054:+	ONCODG1_OVARY	0.02	0.29	0.061	TRUE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	SPOCK2--MTND2P28	6	1	SPOCK2	12874	chr10:73822063:-	MTND2P28	19152	chr1:565027:+	INCL_NON_REF_SPLICE	YES	1237	0	0.01	1	0.0523	0.0087	SPOCK2->chr10:73818793-73848790:-,sparc/osteonectin,_cwcv_and_kazal-like_domains_proteoglycan_(testican)_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	ONCODG1_OVARY	0.01	1	0.061	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	MICU3--MSR1	6	0	MICU3	8118	chr8:16944544:+	MSR1	25828	chr8:16369419:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0523	0	MICU3->chr8:16884747-16980153:+,mitochondrial_calcium_uptake_family_member_3,MSR1->chr8:15965387-16424999:-,macrophage_scavenger_receptor_1	ONCODG1_OVARY	1	1	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	4	8	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17465	0	0	1	0.0348	0.0697	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.1045	FALSE	231	205	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	12	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	18448	0	0	1	0.0261	0.1045	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.1306	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	12	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	18488	0	0	1	0.0261	0.1045	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.1306	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	12	MT-ND4	1534	chrM:11293:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	20679	224	0	0.06	0.0261	0.1045	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.06	0.1306	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	4	7	MT-ND4	1475	chrM:11234:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	18364	530	0	0.02	0.0348	0.061	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.02	0.0958	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	11	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	20332	880	0	0.02	0.0261	0.0958	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.02	0.1219	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	5	2	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	13958	7	0	0.5	0.0436	0.0174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.5	0.061	FALSE	230	193	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	4	6	MT-ND4	1390	chrM:11149:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	18814	880	0	0.01	0.0348	0.0523	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.01	0.0871	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND6--MT-TE	3	10	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0261	0.0871	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ONCODG1_OVARY	0.93	1	0.1132	FALSE	499	1288	110	792	0	FALSE	ACH-000013
ONCODG1_OVARY	RP1-90G24.10--SLC5A1	5	2	RP1-90G24.10	2274	chr22:32603263:+	SLC5A1	21166	chr22:32498009:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0436	0.0174	LOCAL_REARRANGEMENT:+:[92086],RP1-90G24.10->chr22:32601102-32665653:+,SLC5A1->chr22:32439019-32509016:+,solute_carrier_family_5_member_1	ONCODG1_OVARY	0.88	1	0.061	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	AC007956.1--JDP2	4	5	AC007956.1	1165	chr14:75179636:-	JDP2	9506	chr14:75904601:+	ONLY_REF_SPLICE	YES	35	16	0.2	0.36	0.0348	0.0436	AC007956.1->chr14:75158879-75179800:-,JDP2->Jun_dimerization_protein_2,Oncogene{Bushman},chr14:75894419-75940814:+	ONCODG1_OVARY	0.2	0.36	0.0784	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	5	1	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	9512	599	0	0.01	0.0436	0.0087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.01	0.0523	FALSE	230	193	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	9	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	18734	5	0	0.71	0.0261	0.0784	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.71	0.1045	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	5	1	MT-ND4	1010	chrM:10769:+	MT-ATP8	5509	chrM:8496:+	INCL_NON_REF_SPLICE	YES	700	1509	0.01	0	0.0436	0.0087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.01	0.0523	FALSE	230	190	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	9	MT-ND4	1447	chrM:11206:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18734	7	0	0.63	0.0261	0.0784	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.63	0.1045	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	4	5	MT-ND5	1308	chrM:12644:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	4102	0	0	1	0.0348	0.0436	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.0784	FALSE	42	35	7	104	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	3	9	MT-ND5	1604	chrM:12940:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	2303	0	0.01	1	0.0261	0.0784	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0.01	1	0.1045	FALSE	42	36	7	104	0	FALSE	ACH-000013
ONCODG1_OVARY	MYO9A--ZYG11B	5	1	MYO9A	25897	chr15:72226011:-	ZYG11B	71221	chr1:53245525:+	ONLY_REF_SPLICE	YES	9	19	0.4	0.24	0.0436	0.0087	{Klijn_CCL:Ovary=1},MYO9A->chr15:72114632-72410918:-,myosin_IXA,ZYG11B->chr1:53192126-53293014:+,zyg-11_family_member_B,_cell_cycle_regulator	ONCODG1_OVARY	0.24	0.4	0.0523	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	IL1RAPL2--TCEAL3	5	0	IL1RAPL2	1737	chrX:103811732:+	TCEAL3	19300	chrX:102863532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	IL1RAPL2->chrX:103810996-105011822:+,interleukin_1_receptor_accessory_protein_like_2,TCEAL3->chrX:102862379-102884618:+,transcription_elongation_factor_A_like_3	ONCODG1_OVARY	1	1	0.0436	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	INTS4--GAB2	4	4	INTS4	30163	chr11:77589891:-	GAB2	44770	chr11:77934722:-	INCL_NON_REF_SPLICE	YES	28	40	0.22	0.17	0.0348	0.0348	Cosmic{samples=2,mutations=2,papers=1},Mitelman{CA_ad=1},INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	ONCODG1_OVARY	0.17	0.22	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	KLHL35--GDPD5	5	0	KLHL35	6726	chr11:75134736:-	GDPD5	23782	chr11:75173934:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[4011],KLHL35->chr11:75133438-75141674:-,kelch_like_family_member_35,GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5	ONCODG1_OVARY	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND3--MT-ATP8	5	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	1	1	0.0436	FALSE	351	233	23	137	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	5	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	1	1	0.0436	FALSE	344	821	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	3	8	MT-ND5	1969	chrM:13305:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	3203	599	0	0.02	0.0261	0.0697	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.02	0.0958	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	PGS1--AC061992.2	4	4	PGS1	13022	chr17:76415806:+	AC061992.2	22551	chr17:76340046:+	ONLY_REF_SPLICE	YES	211	2	0.04	0.8	0.0348	0.0348	LOCAL_REARRANGEMENT:+:[30842],PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1,AC061992.2->chr17:76311810-76343879:+	ONCODG1_OVARY	0.04	0.8	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	HDAC7--VDR	1	15	HDAC7	16871	chr12:48183306:-	VDR	30611	chr12:48276557:-	ONLY_REF_SPLICE	YES	517	4	0.03	0.8	0.0087	0.1307	LOCAL_REARRANGEMENT:-:[8405],HDAC7->chr12:48176505-48226915:-,histone_deacetylase_7,VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor	ONCODG1_OVARY	0.03	0.8	0.1394	TRUE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	HDAC7--VDR	1	15	HDAC7	18682	chr12:48181495:-	VDR	32992	chr12:48258960:-	ONLY_REF_SPLICE	YES	311	7	0.05	0.7	0.0087	0.1307	LOCAL_REARRANGEMENT:-:[8405],HDAC7->chr12:48176505-48226915:-,histone_deacetylase_7,VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor	ONCODG1_OVARY	0.05	0.7	0.1394	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	AFAP1--ABLIM2	4	2	AFAP1	1271	chr4:7941383:-	ABLIM2	58657	chr4:7994654:-	ONLY_REF_SPLICE	YES	45	1	0.12	0.86	0.0348	0.0174	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	ONCODG1_OVARY	0.12	0.86	0.0522	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	ATP6V0D2--CTA-392E5.1	4	2	ATP6V0D2	7367	chr8:87126109:+	CTA-392E5.1	21642	chr8:86920542:+	ONLY_REF_SPLICE	YES	17	28	0.26	0.18	0.0348	0.0174	LOCAL_REARRANGEMENT:+:[36240],ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+,CTA-392E5.1->chr8:86851934-86963312:+	ONCODG1_OVARY	0.18	0.26	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	FBXO34--CDKN3	3	6	FBXO34	1235	chr14:55738255:+	CDKN3	16673	chr14:54875463:+	ONLY_REF_SPLICE	YES	0	185	1	0.05	0.0261	0.0523	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3	ONCODG1_OVARY	0.05	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	6	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	19152	599	0	0.01	0.0261	0.0523	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.01	0.0784	FALSE	231	217	16	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	4	2	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	14325	0	0	1	0.0348	0.0174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.0522	FALSE	231	204	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	3	6	MT-ND5	2070	chrM:13406:+	MT-ATP8	5945	chrM:8498:+	INCL_NON_REF_SPLICE	YES	3761	1581	0	0.01	0.0261	0.0523	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.01	0.0784	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	3	6	MT-ND5	1383	chrM:12719:+	MT-ATP8	5887	chrM:8440:+	INCL_NON_REF_SPLICE	YES	4145	0	0	1	0.0261	0.0523	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.0784	FALSE	42	36	7	104	0	FALSE	ACH-000013
ONCODG1_OVARY	RP11-973F15.1--RP11-96B2.1	4	2	RP11-973F15.1	1226	chr8:123706120:-	RP11-96B2.1	7930	chr8:123499705:-	ONLY_REF_SPLICE	YES	60	0	0.09	1	0.0348	0.0174	RP11-973F15.1->chr8:123682624-123706345:-,RP11-96B2.1->chr8:123497754-123502054:-	ONCODG1_OVARY	0.09	1	0.0522	TRUE	0	8	0	3	8	TRUE	ACH-000013
ONCODG1_OVARY	MT-CO1--MT-ND1	3	5	MT-CO1	1699	chrM:6602:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	NO	18785	7009	0	0	0.0261	0.0436	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	ONCODG1_OVARY	0	0	0.0697	FALSE	39	30	6	19	0	FALSE	ACH-000013
ONCODG1_OVARY	RBM47--APBB2	3	5	RBM47	2480	chr4:40631413:-	APBB2	40544	chr4:40895428:-	ONLY_REF_SPLICE	YES	27	17	0.23	0.32	0.0261	0.0436	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	ONCODG1_OVARY	0.23	0.32	0.0697	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	RP11-17A1.3--GAS2	4	1	RP11-17A1.3	3526	chr11:22859910:+	GAS2	25948	chr11:22833344:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0348	0.0087	LOCAL_REARRANGEMENT:+:[16325],RP11-17A1.3->chr11:22850926-22966939:+,GAS2->chr11:22647188-22834601:+,growth_arrest_specific_2	ONCODG1_OVARY	0.83	1	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	ADRM1--OSBPL2	4	0	ADRM1	1957	chr20:60878105:+	OSBPL2	21595	chr20:60859102:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	LOCAL_REARRANGEMENT:+:[5881],ADRM1->adhesion_regulating_molecule_1,chr20:60877149-60883918:+,OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2	ONCODG1_OVARY	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	ANXA2--NARG2	3	4	ANXA2	15528	chr15:60674541:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	YES	3912	87	0	0.07	0.0261	0.0348	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	ONCODG1_OVARY	0	0.07	0.0609	FALSE	0	2	0	3	2	FALSE	ACH-000013
ONCODG1_OVARY	ARL16--SLC25A10	4	0	ARL16	1389	chr17:79650566:-	SLC25A10	12649	chr17:79681983:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	LOCAL_INVERSION:-:+,chr17:[19447],ARL16->ADP_ribosylation_factor_like_GTPase_16,chr17:79648204-79650954:-,SLC25A10->chr17:79670401-79687569:+,chr17:79670404-79688042:+,solute_carrier_family_25_member_10	ONCODG1_OVARY	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	DEDD2--PAFAH1B3	3	4	DEDD2	6504	chr19:42713852:-	PAFAH1B3	16791	chr19:42804439:-	ONLY_REF_SPLICE	YES	16	114	0.3	0.06	0.0261	0.0348	LOCAL_REARRANGEMENT:-:[76893],DEDD2->chr19:42702750-42724292:-,death_effector_domain_containing_2,PAFAH1B3->chr19:42801185-42807698:-,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_3	ONCODG1_OVARY	0.06	0.3	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	GATS--PILRB	4	0	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	ONCODG1_OVARY	1	1	0.0348	TRUE	57	41	2	35	0	FALSE	ACH-000013
ONCODG1_OVARY	MED21--STK38L	4	0	MED21	7744	chr12:27199165:+	STK38L	18653	chr12:27450643:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	MED21->chr12:27175479-27219276:+,mediator_complex_subunit_21,STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like	ONCODG1_OVARY	1	1	0.0348	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-CO1--MT-ND1	3	4	MT-CO1	1703	chrM:6606:+	MT-ND1	6057	chrM:3821:+	INCL_NON_REF_SPLICE	NO	18538	9075	0	0	0.0261	0.0348	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	ONCODG1_OVARY	0	0	0.0609	FALSE	39	30	6	19	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-CO1--MT-ND1	3	4	MT-CO1	1653	chrM:6556:+	MT-ND1	5761	chrM:3525:+	INCL_NON_REF_SPLICE	NO	19518	7220	0	0	0.0261	0.0348	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	ONCODG1_OVARY	0	0	0.0609	FALSE	39	30	6	19	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ND4L	4	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONCODG1_OVARY	1	1	0.0348	FALSE	344	821	44	306	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ONCODG1_OVARY	1	1	0.0348	FALSE	499	1288	110	792	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-CO1--MT-ND1	3	3	MT-CO1	1653	chrM:6556:+	MT-ND1	6262	chrM:4026:+	INCL_NON_REF_SPLICE	YES	19518	4590	0	0	0.0261	0.0261	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	ONCODG1_OVARY	0	0	0.0522	FALSE	39	30	6	19	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND3--MT-ATP8	3	3	MT-ND3	1290	chrM:10348:+	MT-ATP8	4418	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0.0261	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	1	1	0.0522	FALSE	351	233	23	137	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	3	MT-ND4	1217	chrM:10976:+	MT-ATP8	5425	chrM:8412:+	INCL_NON_REF_SPLICE	YES	14040	0	0	1	0.0261	0.0261	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.0522	FALSE	230	198	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	3	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	NO	14111	0	0	1	0.0261	0.0261	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.0522	FALSE	230	197	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND5--MT-ATP8	3	3	MT-ND5	1854	chrM:13190:+	MT-ATP8	5985	chrM:8538:+	INCL_NON_REF_SPLICE	YES	2888	1825	0	0	0.0261	0.0261	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0	0.0522	FALSE	43	37	8	105	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-TL1--MT-RNR2	3	3	MT-TL1	1104	chrM:3333:+	MT-RNR2	5603	chrM:3198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0.0261	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ONCODG1_OVARY	1	1	0.0522	FALSE	7	521	16	32	0	FALSE	ACH-000013
ONCODG1_OVARY	PPFIBP1--SMCO2	3	3	PPFIBP1	4200	chr12:27731172:+	SMCO2	45492	chr12:27627719:+	ONLY_REF_SPLICE	YES	412	0	0.01	1	0.0261	0.0261	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	ONCODG1_OVARY	0.01	1	0.0522	FALSE	0	1	0	5	1	FALSE	ACH-000013
ONCODG1_OVARY	FAR2--MKX	3	2	FAR2	14495	chr12:29464883:+	MKX	31026	chr10:28007525:-	ONLY_REF_SPLICE	YES	25	5	0.17	0.5	0.0261	0.0174	{Klijn_CCL:Ovary=1},FAR2->chr12:29302036-29493913:+,fatty_acyl-CoA_reductase_2,MKX->chr10:27961804-28034989:-,mohawk_homeobox	ONCODG1_OVARY	0.17	0.5	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1110	chrM:10869:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	8872	0	0	1	0.0261	0.0174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	1	0.0435	FALSE	230	193	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	PSMA7--LAMA5	3	2	PSMA7	4059	chr20:60714908:-	LAMA5	28490	chr20:60904849:-	INCL_NON_REF_SPLICE	NO	1040	228	0	0.02	0.0261	0.0174	PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7,LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5	ONCODG1_OVARY	0	0.02	0.0435	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	RBM38--RP4-813D12.3	3	2	RBM38	2371	chr20:55967833:+	RP4-813D12.3	13297	chr20:55857299:+	ONLY_REF_SPLICE	YES	303	7	0.02	0.42	0.0261	0.0174	RBM38->RNA_binding_motif_protein_38,chr20:55966463-55984389:+,RP4-813D12.3->chr20:55841853-55858054:+	ONCODG1_OVARY	0.02	0.42	0.0435	TRUE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	SLC3A2--SCGB1A1	3	2	SLC3A2	3261	chr11:62639141:+	SCGB1A1	19773	chr11:62189693:+	ONLY_REF_SPLICE	YES	114	0	0.04	1	0.0261	0.0174	SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2,SCGB1A1->chr11:62172575-62190667:+,secretoglobin_family_1A_member_1	ONCODG1_OVARY	0.04	1	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	ANXA2--NARG2	2	5	ANXA2	26813	chr15:60643392:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	YES	4537	87	0	0.07	0.0174	0.0436	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	ONCODG1_OVARY	0	0.07	0.061	FALSE	0	0	0	2	0	FALSE	ACH-000013
ONCODG1_OVARY	ARHGAP29--RP11-148B18.4	3	1	ARHGAP29	2276	chr1:94702971:-	RP11-148B18.4	37288	chr1:94790031:-	INCL_NON_REF_SPLICE	YES	99	0	0.04	1	0.0261	0.0087	LOCAL_REARRANGEMENT:-:[43411],ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-,RP11-148B18.4->chr1:94784035-94790125:-	ONCODG1_OVARY	0.04	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1253	chrM:11012:+	MT-ATP8	5527	chrM:8514:+	INCL_NON_REF_SPLICE	YES	14522	2029	0	0	0.0261	0.0087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0	0.0348	FALSE	231	204	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1164	chrM:10923:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	11670	599	0	0.01	0.0261	0.0087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.01	0.0348	FALSE	230	193	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	NO	14273	599	0	0.01	0.0261	0.0087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONCODG1_OVARY	0	0.01	0.0348	FALSE	231	204	14	283	0	FALSE	ACH-000013
ONCODG1_OVARY	SHISA5--SLC25A20	3	1	SHISA5	6046	chr3:48520586:-	SLC25A20	20567	chr3:48900092:-	ONLY_REF_SPLICE	YES	90	31	0.04	0.11	0.0261	0.0087	SHISA5->chr3:48509197-48542259:-,shisa_family_member_5,SLC25A20->chr3:48894369-48936426:-,solute_carrier_family_25_member_20	ONCODG1_OVARY	0.04	0.11	0.0348	TRUE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	AC005592.2--RNF14	2	4	AC005592.2	3506	chr5:141733148:+	RNF14	25817	chr5:141362945:+	ONLY_REF_SPLICE	YES	2	77	0.75	0.07	0.0174	0.0348	AC005592.2->chr5:141704858-142051566:+,RNF14->chr5:141337893-141369856:+,ring_finger_protein_14	ONCODG1_OVARY	0.07	0.75	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	C18orf25--HAUS1	3	0	C18orf25	1160	chr18:43753678:+	HAUS1	21863	chr18:43702433:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	LOCAL_REARRANGEMENT:+:[45220],C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	CCDC6--ANK3	2	4	CCDC6	1535	chr10:61665880:-	ANK3	53035	chr10:61874089:-	ONLY_REF_SPLICE	YES	88	67	0.06	0.08	0.0174	0.0348	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	ONCODG1_OVARY	0.06	0.08	0.0522	TRUE	0	0	0	2	0	FALSE	ACH-000013
ONCODG1_OVARY	CNN3--ALG14	3	0	CNN3	1441	chr1:95392394:-	ALG14	17538	chr1:95492816:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	LOCAL_REARRANGEMENT:-:[47129],CNN3->calponin_3,chr1:95362507-95392834:-,ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-	ONCODG1_OVARY	1	1	0.0261	TRUE	0	1	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	CNNM2--GBF1	3	0	CNNM2	2809	chr10:104679858:+	GBF1	52473	chr10:104139610:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	CNNM2->chr10:104678050-104849978:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_2,GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	DEDD2--PAFAH1B3	3	0	DEDD2	6504	chr19:42713852:-	PAFAH1B3	18162	chr19:42801517:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	LOCAL_REARRANGEMENT:-:[76893],DEDD2->chr19:42702750-42724292:-,death_effector_domain_containing_2,PAFAH1B3->chr19:42801185-42807698:-,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_3	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	EPHA2--ARHGEF19	3	0	EPHA2	3978	chr1:16474873:-	ARHGEF19	21586	chr1:16533705:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[41767],EPHA2->EPH_receptor_A2,Oncogene{Bushman},chr1:16450832-16482582:-,ARHGEF19->Rho_guanine_nucleotide_exchange_factor_19,chr1:16524349-16539104:-	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	KLHL35--GDPD5	3	0	KLHL35	7730	chr11:75133732:-	GDPD5	23782	chr11:75173934:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[4011],KLHL35->chr11:75133438-75141674:-,kelch_like_family_member_35,GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	LINC00635--BBX	3	0	LINC00635	16215	chr3:107567753:-	BBX	49417	chr3:107491475:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	LOCAL_INVERSION:-:+:[28904],LINC00635->chr3:107559075-107600847:-,long_intergenic_non-protein_coding_RNA_635,BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MAP4--CDC25A	3	0	MAP4	1507	chr3:48130263:-	CDC25A	49456	chr3:48209434:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[67867],MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,CDC25A->Oncogene{Bushman},cell_division_cycle_25A,chr3:48198636-48229892:-	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MED21--STK38L	3	0	MED21	7744	chr12:27199165:+	STK38L	17973	chr12:27449963:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	MED21->chr12:27175479-27219276:+,mediator_complex_subunit_21,STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	NF1--UTP6	3	0	NF1	39979	chr17:29592357:+	UTP6	79090	chr17:30226749:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,UTP6->UTP6,_small_subunit_processome_component,chr17:30187923-30228784:-	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	PSAP--SPATA32	3	0	PSAP	10167	chr10:73579494:-	SPATA32	21447	chr17:43332802:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,SPATA32->chr17:43331760-43339479:-,spermatogenesis_associated_32	ONCODG1_OVARY	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	RP11-476K15.1--CTD-2015H3.2	2	4	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0174	0.0348	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	ONCODG1_OVARY	0.86	1	0.0522	FALSE	0	46	0	73	0	FALSE	ACH-000013
ONCODG1_OVARY	RPSAP52--HMGA2	3	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	ONCODG1_OVARY	1	1	0.0261	FALSE	0	59	0	125	0	FALSE	ACH-000013
ONCODG1_OVARY	AC007956.1--JDP2	1	7	AC007956.1	2258	chr14:75165467:-	JDP2	9506	chr14:75904601:+	ONLY_REF_SPLICE	YES	39	16	0.17	0.33	0.0087	0.061	AC007956.1->chr14:75158879-75179800:-,JDP2->Jun_dimerization_protein_2,Oncogene{Bushman},chr14:75894419-75940814:+	ONCODG1_OVARY	0.17	0.33	0.0697	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	C18orf25--HAUS1	2	3	C18orf25	1160	chr18:43753678:+	HAUS1	20728	chr18:43699892:+	ONLY_REF_SPLICE	YES	27	67	0.16	0.07	0.0174	0.0261	LOCAL_REARRANGEMENT:+:[45220],C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+	ONCODG1_OVARY	0.07	0.16	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	HDAC7--VDR	1	7	HDAC7	20634	chr12:48179535:-	VDR	34123	chr12:48251471:-	ONLY_REF_SPLICE	YES	387	9	0.02	0.47	0.0087	0.061	LOCAL_REARRANGEMENT:-:[8405],HDAC7->chr12:48176505-48226915:-,histone_deacetylase_7,VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor	ONCODG1_OVARY	0.02	0.47	0.0697	TRUE	0	1	0	1	1	FALSE	ACH-000013
ONCODG1_OVARY	KLHDC10--RP11-306G20.1	2	3	KLHDC10	1300	chr7:129710649:+	RP11-306G20.1	23943	chr7:129648716:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0174	0.0261	LOCAL_REARRANGEMENT:+:[43959],KLHDC10->chr7:129710350-129775560:+,kelch_domain_containing_10,RP11-306G20.1->chr7:129593074-129666391:+	ONCODG1_OVARY	0.83	1	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	RP11-680G10.1--GSE1	2	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	13	1	0.28	0.0174	0.0261	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ONCODG1_OVARY	0.28	1	0.0435	TRUE	458	1351	185	561	0	FALSE	ACH-000013
ONCODG1_OVARY	RP11-973F15.1--RP11-94A24.1	2	3	RP11-973F15.1	2854	chr8:123683508:-	RP11-94A24.1	7870	chr8:123429261:-	ONLY_REF_SPLICE	YES	29	0	0.15	1	0.0174	0.0261	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	ONCODG1_OVARY	0.15	1	0.0435	TRUE	0	2	0	7	2	TRUE	ACH-000013
ONCODG1_OVARY	SLC27A1--CTD-2521M24.9	2	3	SLC27A1	2506	chr19:17581516:+	CTD-2521M24.9	20174	chr19:17516886:+	ONLY_REF_SPLICE	YES	8	4	0.38	0.56	0.0174	0.0261	LOCAL_REARRANGEMENT:+:[49865],SLC27A1->Oncogene{Bushman},chr19:17579578-17616977:+,solute_carrier_family_27_member_1,CTD-2521M24.9->chr19:17516503-17529713:+	ONCODG1_OVARY	0.38	0.56	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	CMTM8--CMTM7	2	2	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	40	65	0.09	0.06	0.0174	0.0174	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	ONCODG1_OVARY	0.06	0.09	0.0348	FALSE	118	557	29	88	0	FALSE	ACH-000013
ONCODG1_OVARY	EDC4--TSNAXIP1	2	2	EDC4	1321	chr16:67907246:+	TSNAXIP1	16221	chr16:67848205:+	ONLY_REF_SPLICE	NO	14	2	0.22	0.67	0.0174	0.0174	LOCAL_REARRANGEMENT:+:[40875],EDC4->chr16:67906926-67918406:+,enhancer_of_mRNA_decapping_4,TSNAXIP1->chr16:67840668-67866051:+,translin_associated_factor_X_interacting_protein_1	ONCODG1_OVARY	0.22	0.67	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	RP1-90G24.10--SLC5A1	2	2	RP1-90G24.10	2274	chr22:32603263:+	SLC5A1	19997	chr22:32495170:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0174	0.0174	LOCAL_REARRANGEMENT:+:[92086],RP1-90G24.10->chr22:32601102-32665653:+,SLC5A1->chr22:32439019-32509016:+,solute_carrier_family_5_member_1	ONCODG1_OVARY	0.8	1	0.0348	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0174	0.0174	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ONCODG1_OVARY	0.57	1	0.0348	FALSE	407	2205	196	549	0	FALSE	ACH-000013
ONCODG1_OVARY	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	0	0.8	1	0.0174	0.0174	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ONCODG1_OVARY	0.8	1	0.0348	FALSE	467	2173	244	435	0	FALSE	ACH-000013
ONCODG1_OVARY	SVIL--MPP7	1	6	SVIL	5350	chr10:29946898:-	MPP7	73239	chr10:28358781:-	ONLY_REF_SPLICE	YES	10	19	0.41	0.27	0.0087	0.0523	SVIL->chr10:29746267-30025710:-,supervillin,MPP7->chr10:28339922-28623415:-,membrane_palmitoylated_protein_7	ONCODG1_OVARY	0.27	0.41	0.061	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	UBE2O--RHBDF2	2	2	UBE2O	1482	chr17:74448807:-	RHBDF2	20898	chr17:74484214:-	ONLY_REF_SPLICE	YES	3	11	0.57	0.27	0.0174	0.0174	LOCAL_REARRANGEMENT:-:[17685],UBE2O->chr17:74385532-74449288:-,ubiquitin_conjugating_enzyme_E2_O,RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila)	ONCODG1_OVARY	0.27	0.57	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	AGO2--PTK2	2	1	AGO2	1135	chr8:141645584:-	PTK2	82948	chr8:141675096:-	ONLY_REF_SPLICE	YES	0	116	1	0.03	0.0174	0.0087	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[22281],AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	ONCODG1_OVARY	0.03	1	0.0261	TRUE	0	1	0	1	1	FALSE	ACH-000013
ONCODG1_OVARY	ANXA2--NARG2	1	5	ANXA2	27937	chr15:60641274:-	NARG2	55379	chr15:60724183:-	ONLY_REF_SPLICE	YES	4426	58	0	0.09	0.0087	0.0436	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	ONCODG1_OVARY	0	0.09	0.0523	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	ANXA2--NARG2	1	5	ANXA2	26282	chr15:60643923:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	NO	4642	87	0	0.06	0.0087	0.0436	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	ONCODG1_OVARY	0	0.06	0.0523	FALSE	0	0	0	2	0	FALSE	ACH-000013
ONCODG1_OVARY	ANXA2--NARG2	1	5	ANXA2	20796	chr15:60653140:-	NARG2	48568	chr15:60734744:-	ONLY_REF_SPLICE	YES	5223	42	0	0.12	0.0087	0.0436	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	ONCODG1_OVARY	0	0.12	0.0523	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	ANXA2--NARG2	1	5	ANXA2	27937	chr15:60641274:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	NO	4426	87	0	0.06	0.0087	0.0436	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	ONCODG1_OVARY	0	0.06	0.0523	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	CNN2--ARID3A	1	5	CNN2	3026	chr19:1031191:+	ARID3A	17446	chr19:960092:+	ONLY_REF_SPLICE	NO	846	9	0.01	0.4	0.0087	0.0436	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:+:[50359],CNN2->calponin_2,chr19:1026298-1039068:+,ARID3A->AT-rich_interaction_domain_3A,chr19:925781-975939:+	ONCODG1_OVARY	0.01	0.4	0.0523	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	CNNM2--GBF1	2	1	CNNM2	2809	chr10:104679858:+	GBF1	51904	chr10:104139041:+	ONLY_REF_SPLICE	YES	8	82	0.27	0.04	0.0174	0.0087	CNNM2->chr10:104678050-104849978:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_2,GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1	ONCODG1_OVARY	0.04	0.27	0.0261	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	CYTH3--FAM220A	2	1	CYTH3	1171	chr7:6312105:-	FAM220A	22473	chr7:6370866:-	ONLY_REF_SPLICE	NO	42	12	0.07	0.2	0.0174	0.0087	LOCAL_REARRANGEMENT:-:[56765],CYTH3->chr7:6201407-6312275:-,cytohesin_3,FAM220A->chr7:6369040-6388612:-,family_with_sequence_similarity_220_member_A	ONCODG1_OVARY	0.07	0.2	0.0261	TRUE	0	1	0	2	1	TRUE	ACH-000013
ONCODG1_OVARY	LRFN1--BLVRB	2	1	LRFN1	2406	chr19:39804571:-	BLVRB	9613	chr19:40964452:-	ONLY_REF_SPLICE	YES	92	105	0.03	0.03	0.0174	0.0087	LRFN1->chr19:39797208-39805976:-,leucine_rich_repeat_and_fibronectin_type_III_domain_containing_1,BLVRB->biliverdin_reductase_B,chr19:40953696-40971747:-	ONCODG1_OVARY	0.03	0.03	0.0261	TRUE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	MYH9--CACNG2	2	1	MYH9	1212	chr22:36783852:-	CACNG2	49837	chr22:36962540:-	ONLY_REF_SPLICE	YES	524	0	0.01	1	0.0174	0.0087	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,CACNG2->calcium_voltage-gated_channel_auxiliary_subunit_gamma_2,chr22:36959968-37099603:-	ONCODG1_OVARY	0.01	1	0.0261	FALSE	0	1	1	1	1	FALSE	ACH-000013
ONCODG1_OVARY	RP1-34H18.1--NAV3	2	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0.0087	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	ONCODG1_OVARY	1	1	0.0261	TRUE	254	575	65	124	0	FALSE	ACH-000013
ONCODG1_OVARY	ANXA2--NARG2	1	4	ANXA2	20796	chr15:60653140:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	NO	5223	87	0	0.05	0.0087	0.0348	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	ONCODG1_OVARY	0	0.05	0.0435	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	ANXA2--NARG2	1	4	ANXA2	20796	chr15:60653140:-	NARG2	55379	chr15:60724183:-	ONLY_REF_SPLICE	NO	5223	58	0	0.08	0.0087	0.0348	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	ONCODG1_OVARY	0	0.08	0.0435	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	ANXA2--NARG2	2	0	ANXA2	11842	chr15:60678227:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	ONCODG1_OVARY	1	1	0.0174	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	CCDC6--ANK3	2	0	CCDC6	1535	chr10:61665880:-	ANK3	85094	chr10:61802517:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	ONCODG1_OVARY	1	1	0.0174	TRUE	0	3	0	2	3	TRUE	ACH-000013
ONCODG1_OVARY	CPSF6--SRSF1	2	0	CPSF6	11046	chr12:69656342:+	SRSF1	22199	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	ONCODG1_OVARY	1	1	0.0174	TRUE	2	7	0	12	0	FALSE	ACH-000013
ONCODG1_OVARY	GIGYF2--EIF4E2	2	0	GIGYF2	34093	chr2:233674521:+	EIF4E2	69968	chr2:233445614:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,EIF4E2->chr2:233414762-233448354:+,eukaryotic_translation_initiation_factor_4E_family_member_2	ONCODG1_OVARY	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	GPS1--ASPSCR1	2	0	GPS1	7076	chr17:80014642:+	ASPSCR1	25088	chr17:79966913:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	LOCAL_REARRANGEMENT:+:[33285],GPS1->G_protein_pathway_suppressor_1,chr17:80008567-80015346:+,ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+	ONCODG1_OVARY	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	PGS1--AC061992.2	1	4	PGS1	16340	chr17:76420273:+	AC061992.2	22551	chr17:76340046:+	ONLY_REF_SPLICE	YES	112	2	0.04	0.71	0.0087	0.0348	LOCAL_REARRANGEMENT:+:[30842],PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1,AC061992.2->chr17:76311810-76343879:+	ONCODG1_OVARY	0.04	0.71	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	PPFIBP1--SMCO2	2	0	PPFIBP1	1935	chr12:27677298:+	SMCO2	51223	chr12:27654856:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	ONCODG1_OVARY	1	1	0.0174	TRUE	0	1	0	1	1	TRUE	ACH-000013
ONCODG1_OVARY	RP1-155G6.4--STAU1	2	0	RP1-155G6.4	1185	chr20:47662397:-	STAU1	8932	chr20:47790806:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	LOCAL_REARRANGEMENT:-:[67297],RP1-155G6.4->chr20:47657000-47662581:-,STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1	ONCODG1_OVARY	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	ONCODG1_OVARY	1	1	0.0174	TRUE	274	363	69	150	0	FALSE	ACH-000013
ONCODG1_OVARY	SAMD8--DUSP13	2	0	SAMD8	2395	chr10:76871480:+	DUSP13	24725	chr10:76855553:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	{Klijn_CCL:Ovary=1},NEIGHBORS_OVERLAP:+:-:[9635],SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,DUSP13->chr10:76854192-76868979:-,dual_specificity_phosphatase_13	ONCODG1_OVARY	1	1	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	TTYH3--MAD1L1	2	0	TTYH3	1328	chr7:2671912:+	MAD1L1	53732	chr7:1938026:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	ONCODG1_OVARY	1	1	0.0174	TRUE	0	6	0	2	1	TRUE	ACH-000013
ONCODG1_OVARY	ZFX--MAP7D2	2	0	ZFX	1622	chrX:24167911:+	MAP7D2	30087	chrX:20071106:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	ZFX->chrX:24167290-24234372:+,zinc_finger_protein,_X-linked,MAP7D2->MAP7_domain_containing_2,chrX:20024831-20135035:-	ONCODG1_OVARY	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	ZFX--MAP7D2	2	0	ZFX	1622	chrX:24167911:+	MAP7D2	34610	chrX:20044070:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	ZFX->chrX:24167290-24234372:+,zinc_finger_protein,_X-linked,MAP7D2->MAP7_domain_containing_2,chrX:20024831-20135035:-	ONCODG1_OVARY	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	KANSL1--ARL17B	1	3	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	29	16	0.12	0.2	0.0087	0.0261	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	ONCODG1_OVARY	0.12	0.2	0.0348	TRUE	105	90	7	93	0	FALSE	ACH-000013
ONCODG1_OVARY	PGS1--AC061992.2	1	3	PGS1	12972	chr17:76415756:+	AC061992.2	22551	chr17:76340046:+	ONLY_REF_SPLICE	NO	206	2	0.02	0.67	0.0087	0.0261	LOCAL_REARRANGEMENT:+:[30842],PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1,AC061992.2->chr17:76311810-76343879:+	ONCODG1_OVARY	0.02	0.67	0.0348	TRUE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	PPP1CB--BRE	1	3	PPP1CB	1537	chr2:28975042:+	BRE	26447	chr2:28352138:+	ONLY_REF_SPLICE	YES	468	36	0.01	0.1	0.0087	0.0261	GTEx_FI:{Esophagus=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2]},GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta,BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+	ONCODG1_OVARY	0.01	0.1	0.0348	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	UBN1--UBALD1	1	3	UBN1	8794	chr16:4911103:+	UBALD1	27199	chr16:4659984:-	ONLY_REF_SPLICE	NO	22	28	0.15	0.12	0.0087	0.0261	UBN1->chr16:4896666-4932361:+,ubinuclein_1,UBALD1->UBA_like_domain_containing_1,chr16:4658884-4665028:-	ONCODG1_OVARY	0.12	0.15	0.0348	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	AFAP1--ABLIM2	1	2	AFAP1	1271	chr4:7941383:-	ABLIM2	53571	chr4:8010829:-	ONLY_REF_SPLICE	NO	45	6	0.06	0.33	0.0087	0.0174	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	ONCODG1_OVARY	0.06	0.33	0.0261	TRUE	0	1	0	2	1	TRUE	ACH-000013
ONCODG1_OVARY	AFAP1--ABLIM2	1	2	AFAP1	6167	chr4:7857193:-	ABLIM2	47844	chr4:8031503:-	ONLY_REF_SPLICE	YES	112	4	0.03	0.43	0.0087	0.0174	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	ONCODG1_OVARY	0.03	0.43	0.0261	TRUE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	BMP7--ZBP1	1	2	BMP7	7812	chr20:55777531:-	ZBP1	23464	chr20:56191524:-	ONLY_REF_SPLICE	NO	462	1	0.01	0.75	0.0087	0.0174	BMP7->bone_morphogenetic_protein_7,chr20:55743804-55841685:-,ZBP1->Z-DNA_binding_protein_1,chr20:56178902-56195632:-	ONCODG1_OVARY	0.01	0.75	0.0261	FALSE	0	0	0	2	0	FALSE	ACH-000013
ONCODG1_OVARY	C18orf25--HAUS1	1	2	C18orf25	1778	chr18:43754296:+	HAUS1	21863	chr18:43702433:+	ONLY_REF_SPLICE	YES	71	89	0.04	0.03	0.0087	0.0174	LOCAL_REARRANGEMENT:+:[45220],C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+	ONCODG1_OVARY	0.03	0.04	0.0261	TRUE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	CPD--CTD-2526M8.2	1	2	CPD	22483	chr17:28783544:+	CTD-2526M8.2	35575	chr18:54837261:-	ONLY_REF_SPLICE	NO	35	0	0.08	1	0.0087	0.0174	CPD->carboxypeptidase_D,chr17:28705923-28797007:+,CTD-2526M8.2->chr18:54836846-54838425:-	ONCODG1_OVARY	0.08	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	MRPL12--OGFOD3	1	2	MRPL12	3495	chr17:79674070:+	OGFOD3	13844	chr17:80361966:-	ONLY_REF_SPLICE	NO	478	92	0.01	0.03	0.0087	0.0174	MRPL12->chr17:79670387-79674556:+,mitochondrial_ribosomal_protein_L12,OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-	ONCODG1_OVARY	0.01	0.03	0.0261	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	RP11-973F15.1--RP11-96B2.1	1	2	RP11-973F15.1	1734	chr8:123705612:-	RP11-96B2.1	7930	chr8:123499705:-	ONLY_REF_SPLICE	NO	62	0	0.05	1	0.0087	0.0174	RP11-973F15.1->chr8:123682624-123706345:-,RP11-96B2.1->chr8:123497754-123502054:-	ONCODG1_OVARY	0.05	1	0.0261	TRUE	0	8	0	3	8	TRUE	ACH-000013
ONCODG1_OVARY	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0087	0.0174	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ONCODG1_OVARY	0.75	1	0.0261	TRUE	62	24	1	171	0	FALSE	ACH-000013
ONCODG1_OVARY	TMEM117--RP11-210N13.1	1	2	TMEM117	3724	chr12:44338145:+	RP11-210N13.1	18852	chr12:44132149:+	ONLY_REF_SPLICE	YES	14	0	0.18	1	0.0087	0.0174	LOCAL_REARRANGEMENT:+:[94900],TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117,RP11-210N13.1->chr12:44130431-44134870:+	ONCODG1_OVARY	0.18	1	0.0261	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	AFAP1--ABLIM2	1	1	AFAP1	1271	chr4:7941383:-	ABLIM2	60774	chr4:7985281:-	ONLY_REF_SPLICE	YES	45	1	0.04	0.67	0.0087	0.0087	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	ONCODG1_OVARY	0.04	0.67	0.0174	TRUE	0	1	0	3	1	TRUE	ACH-000013
ONCODG1_OVARY	ARHGAP29--RP11-148B18.4	1	1	ARHGAP29	6167	chr1:94674388:-	RP11-148B18.4	38357	chr1:94784463:-	ONLY_REF_SPLICE	YES	693	9	0	0.18	0.0087	0.0087	LOCAL_REARRANGEMENT:-:[43411],ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-,RP11-148B18.4->chr1:94784035-94790125:-	ONCODG1_OVARY	0	0.18	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	ATL2--HNRNPLL	1	1	ATL2	6688	chr2:38570410:-	HNRNPLL	26994	chr2:38813023:-	ONLY_REF_SPLICE	YES	117	61	0.02	0.03	0.0087	0.0087	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	ONCODG1_OVARY	0.02	0.03	0.0174	TRUE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	CD47--IFT57	1	1	CD47	1163	chr3:107809710:-	IFT57	28394	chr3:107910490:-	ONLY_REF_SPLICE	YES	419	964	0	0	0.0087	0.0087	LOCAL_REARRANGEMENT:-:[69787],CD47->CD47_molecule,chr3:107762145-107809872:-,IFT57->chr3:107879659-107941417:-,intraflagellar_transport_57	ONCODG1_OVARY	0	0	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	DEDD2--PAFAH1B3	1	1	DEDD2	6504	chr19:42713852:-	PAFAH1B3	16986	chr19:42804244:-	ONLY_REF_SPLICE	YES	16	69	0.11	0.03	0.0087	0.0087	LOCAL_REARRANGEMENT:-:[76893],DEDD2->chr19:42702750-42724292:-,death_effector_domain_containing_2,PAFAH1B3->chr19:42801185-42807698:-,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_3	ONCODG1_OVARY	0.03	0.11	0.0174	TRUE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	DNAH17--RBFOX3	1	1	DNAH17	23734	chr17:76521091:-	RBFOX3	94993	chr17:77102870:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0087	0.0087	DNAH17->chr17:76419778-76573476:-,dynein_axonemal_heavy_chain_17,RBFOX3->RNA_binding_protein,_fox-1_homolog_3,chr17:77085427-77613550:-	ONCODG1_OVARY	1	1	0.0174	TRUE	0	0	0	2	0	TRUE	ACH-000013
ONCODG1_OVARY	HDAC7--VDR	1	1	HDAC7	2933	chr12:48213550:-	VDR	34123	chr12:48251471:-	ONLY_REF_SPLICE	YES	16	9	0.11	0.18	0.0087	0.0087	LOCAL_REARRANGEMENT:-:[8405],HDAC7->chr12:48176505-48226915:-,histone_deacetylase_7,VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor	ONCODG1_OVARY	0.11	0.18	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	HDAC7--VDR	1	1	HDAC7	2933	chr12:48213550:-	VDR	30611	chr12:48276557:-	ONLY_REF_SPLICE	YES	16	4	0.11	0.33	0.0087	0.0087	LOCAL_REARRANGEMENT:-:[8405],HDAC7->chr12:48176505-48226915:-,histone_deacetylase_7,VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor	ONCODG1_OVARY	0.11	0.33	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000013
ONCODG1_OVARY	KPNA1--PARP9	1	1	KPNA1	2682	chr3:122215284:-	PARP9	43281	chr3:122247590:-	ONLY_REF_SPLICE	YES	276	70	0.01	0.03	0.0087	0.0087	LOCAL_REARRANGEMENT:-:[12979],KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1,PARP9->chr3:122246771-122283424:-,poly(ADP-ribose)_polymerase_family_member_9	ONCODG1_OVARY	0.01	0.03	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	PPFIBP1--SMCO2	1	1	PPFIBP1	1935	chr12:27677298:+	SMCO2	48990	chr12:27647233:+	ONLY_REF_SPLICE	YES	367	2	0.01	0.5	0.0087	0.0087	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	ONCODG1_OVARY	0.01	0.5	0.0174	FALSE	0	1	0	3	1	FALSE	ACH-000013
ONCODG1_OVARY	PROSC--SRSF1	1	1	PROSC	2996	chr8:37623873:+	SRSF1	14701	chr17:56082402:-	ONLY_REF_SPLICE	YES	79	430	0.02	0	0.0087	0.0087	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Breast=[count:2=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=3,Brain_-_Hippocampus=1,Thyroid=1,Adipose_-_Subcutaneous=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	ONCODG1_OVARY	0	0.02	0.0174	FALSE	6	2	0	9	0	FALSE	ACH-000013
ONCODG1_OVARY	PRRC2B--NUP214	1	1	PRRC2B	8645	chr9:134322593:+	NUP214	82668	chr9:134106017:+	ONLY_REF_SPLICE	YES	111	34	0.02	0.06	0.0087	0.0087	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa	ONCODG1_OVARY	0.02	0.06	0.0174	TRUE	0	0	0	1	0	FALSE	ACH-000013
ONCODG1_OVARY	RP11-973F15.1--RP11-94A24.1	1	1	RP11-973F15.1	1226	chr8:123706120:-	RP11-94A24.1	7870	chr8:123429261:-	ONLY_REF_SPLICE	YES	60	0	0.03	1	0.0087	0.0087	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	ONCODG1_OVARY	0.03	1	0.0174	TRUE	0	2	0	5	1	FALSE	ACH-000013
ONCODG1_OVARY	SDC4--KIF24	1	1	SDC4	3286	chr20:43961663:-	KIF24	13357	chr9:34306439:-	ONLY_REF_SPLICE	NO	182	9	0.01	0.18	0.0087	0.0087	SDC4->Oncogene{Bushman},chr20:43953928-43977064:-,syndecan_4,KIF24->chr9:34252379-34329198:-,kinesin_family_member_24	ONCODG1_OVARY	0.01	0.18	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000013
HARA_LUNG	TOM1L2--ALDH3A2	874	603	TOM1L2	1161	chr17:17875576:-	ALDH3A2	29385	chr17:19554860:+	ONLY_REF_SPLICE	YES	31	969	0.98	0.6	12.7653	8.8072	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,ALDH3A2->aldehyde_dehydrogenase_3_family_member_A2,chr17:19551449-19580911:+	HARA_LUNG	0.6	0.98	21.5725	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	TOM1L2--ALDH3A2	189	170	TOM1L2	1161	chr17:17875576:-	ALDH3A2	32621	chr17:19559679:+	ONLY_REF_SPLICE	YES	31	1516	0.92	0.19	2.7605	2.4829	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,ALDH3A2->aldehyde_dehydrogenase_3_family_member_A2,chr17:19551449-19580911:+	HARA_LUNG	0.19	0.92	5.2434	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	RP11-344E13.3--UBBP4	53	127	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	1327	1	0.12	0.99	0.7741	1.8549	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	HARA_LUNG	0.12	0.99	2.629	TRUE	23	13	0	54	0	FALSE	ACH-000843
HARA_LUNG	FRMD6--LINC00640	65	57	FRMD6	1321	chr14:51956138:+	LINC00640	35303	chr14:51800111:+	ONLY_REF_SPLICE	YES	12	0	0.91	1	0.9494	0.8325	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,LINC00640->chr14:51800111-51832275:+,long_intergenic_non-protein_coding_RNA_640	HARA_LUNG	0.91	1	1.7819	TRUE	0	10	0	1	7	TRUE	ACH-000843
HARA_LUNG	TOM1L2--ALDH3A2	16	209	TOM1L2	1161	chr17:17875576:-	ALDH3A2	30385	chr17:19555860:+	ONLY_REF_SPLICE	YES	31	1481	0.88	0.13	0.2337	3.0526	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,ALDH3A2->aldehyde_dehydrogenase_3_family_member_A2,chr17:19551449-19580911:+	HARA_LUNG	0.13	0.88	3.2863	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	TOM1L2--ALDH3A2	5	174	TOM1L2	1161	chr17:17875576:-	ALDH3A2	31534	chr17:19558592:+	INCL_NON_REF_SPLICE	YES	31	1580	0.85	0.1	0.073	2.5414	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,ALDH3A2->aldehyde_dehydrogenase_3_family_member_A2,chr17:19551449-19580911:+	HARA_LUNG	0.1	0.85	2.6144	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	TIMM23B--LINC00843	44	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.6426	0.2337	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HARA_LUNG	0.98	1	0.8763	TRUE	508	994	45	981	0	FALSE	ACH-000843
HARA_LUNG	MT-ND6--MT-TE	46	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6719	0.0146	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HARA_LUNG	1	1	0.6865	FALSE	499	1288	110	792	0	FALSE	ACH-000843
HARA_LUNG	MT-ND6--MT-TE	45	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.6573	0.0292	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HARA_LUNG	0.92	1	0.6865	FALSE	499	1288	110	792	0	FALSE	ACH-000843
HARA_LUNG	TOM1L2--ALDH3A2	27	22	TOM1L2	1161	chr17:17875576:-	ALDH3A2	37415	chr17:19566646:+	ONLY_REF_SPLICE	YES	31	1360	0.61	0.03	0.3944	0.3213	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,ALDH3A2->aldehyde_dehydrogenase_3_family_member_A2,chr17:19551449-19580911:+	HARA_LUNG	0.03	0.61	0.7157	TRUE	0	0	0	1	0	FALSE	ACH-000843
HARA_LUNG	CNGA1--TXK	27	12	CNGA1	1190	chr4:48018500:-	TXK	23801	chr4:48106972:-	ONLY_REF_SPLICE	YES	2	3	0.95	0.93	0.3944	0.1753	LOCAL_REARRANGEMENT:-:[49721],CNGA1->chr4:47937994-48018689:-,cyclic_nucleotide_gated_channel_alpha_1,TXK->TXK_tyrosine_kinase,chr4:48068410-48136273:-	HARA_LUNG	0.93	0.95	0.5697	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	MT-TA--MT-TC	26	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3797	0.0292	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HARA_LUNG	1	1	0.4089	FALSE	462	80	0	856	0	FALSE	ACH-000843
HARA_LUNG	FRMD6--LINC00640	9	63	FRMD6	2445	chr14:51958252:+	LINC00640	35303	chr14:51800111:+	ONLY_REF_SPLICE	YES	10	0	0.88	1	0.1315	0.9202	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,LINC00640->chr14:51800111-51832275:+,long_intergenic_non-protein_coding_RNA_640	HARA_LUNG	0.88	1	1.0517	TRUE	0	2	0	1	2	TRUE	ACH-000843
HARA_LUNG	RNF103--CD8A	21	14	RNF103	10028	chr2:86839282:-	CD8A	22272	chr2:87015683:-	ONLY_REF_SPLICE	YES	36	2	0.49	0.95	0.3067	0.2045	RNF103->chr2:86830516-86850989:-,ring_finger_protein_103,CD8A->CD8a_molecule,chr2:87011729-87035519:-	HARA_LUNG	0.49	0.95	0.5112	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	TIMM23--RP11-464F9.1	24	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	397	5	0.06	0.83	0.3505	0.0146	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HARA_LUNG	0.06	0.83	0.3651	TRUE	519	3926	326	965	0	FALSE	ACH-000843
HARA_LUNG	SRD5A1--NSUN2	17	9	SRD5A1	1527	chr5:6633982:+	NSUN2	25631	chr5:6607497:-	ONLY_REF_SPLICE	YES	22	260	0.54	0.09	0.2483	0.1315	LOCAL_INVERSION:+:-:[52],SRD5A1->chr5:6633456-6669675:+,steroid_5_alpha-reductase_1,NSUN2->NOP2/Sun_RNA_methyltransferase_family_member_2,chr5:6599352-6633404:-	HARA_LUNG	0.09	0.54	0.3798	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	C15orf57--CBX3	13	15	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	22	28	0.56	0.5	0.1899	0.2191	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HARA_LUNG	0.5	0.56	0.409	TRUE	267	562	48	632	0	FALSE	ACH-000843
HARA_LUNG	MT-ND6--MT-TE	15	3	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.78	1	0.2191	0.0438	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HARA_LUNG	0.78	1	0.2629	FALSE	499	1288	110	792	0	FALSE	ACH-000843
HARA_LUNG	TOM1L2--ALDH3A2	6	36	TOM1L2	1161	chr17:17875576:-	ALDH3A2	33854	chr17:19561058:+	ONLY_REF_SPLICE	YES	31	1372	0.58	0.03	0.0876	0.5258	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,ALDH3A2->aldehyde_dehydrogenase_3_family_member_A2,chr17:19551449-19580911:+	HARA_LUNG	0.03	0.58	0.6134	TRUE	0	0	0	1	0	FALSE	ACH-000843
HARA_LUNG	TOM1L2--ALDH3A2	6	29	TOM1L2	1161	chr17:17875576:-	ALDH3A2	36099	chr17:19564440:+	ONLY_REF_SPLICE	YES	31	1661	0.53	0.02	0.0876	0.4236	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,ALDH3A2->aldehyde_dehydrogenase_3_family_member_A2,chr17:19551449-19580911:+	HARA_LUNG	0.02	0.53	0.5112	TRUE	0	0	0	1	0	FALSE	ACH-000843
HARA_LUNG	PLXDC1--TAF13	13	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1899	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HARA_LUNG	1	1	0.1899	TRUE	7	10	0	216	0	FALSE	ACH-000843
HARA_LUNG	MT-ND6--MT-TE	12	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1753	0.0146	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HARA_LUNG	1	1	0.1899	FALSE	499	1288	110	792	0	FALSE	ACH-000843
HARA_LUNG	MT-TA--MT-TC	12	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1753	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HARA_LUNG	1	1	0.1753	FALSE	462	80	0	856	0	FALSE	ACH-000843
HARA_LUNG	SIK2--POU2AF1	9	4	SIK2	1308	chr11:111473422:+	POU2AF1	29521	chr11:111275447:-	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.1315	0.0584	SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2,POU2AF1->Oncogene{Bushman},POU_class_2_associating_factor_1,chr11:111222977-111326355:-	HARA_LUNG	0.87	1	0.1899	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	MT-CO3--MT-ATP6	9	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.67	1	0.1315	0.0146	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HARA_LUNG	0.67	1	0.1461	FALSE	189	492	56	216	0	FALSE	ACH-000843
HARA_LUNG	RNF103--CD8A	4	15	RNF103	10028	chr2:86839282:-	CD8A	19737	chr2:87018218:-	ONLY_REF_SPLICE	YES	36	3	0.35	0.86	0.0584	0.2191	RNF103->chr2:86830516-86850989:-,ring_finger_protein_103,CD8A->CD8a_molecule,chr2:87011729-87035519:-	HARA_LUNG	0.35	0.86	0.2775	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	MT-CO3--MT-ATP6	5	10	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	7	9	0.68	0.62	0.073	0.1461	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HARA_LUNG	0.62	0.68	0.2191	FALSE	189	492	56	216	0	FALSE	ACH-000843
HARA_LUNG	FRMD6--LINC00640	3	16	FRMD6	1321	chr14:51956138:+	LINC00640	39214	chr14:51816387:+	ONLY_REF_SPLICE	YES	12	17	0.61	0.53	0.0438	0.2337	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,LINC00640->chr14:51800111-51832275:+,long_intergenic_non-protein_coding_RNA_640	HARA_LUNG	0.53	0.61	0.2775	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	FRMD6--LINC00640	1	22	FRMD6	1321	chr14:51956138:+	LINC00640	36475	chr14:51809001:+	ONLY_REF_SPLICE	NO	12	16	0.66	0.59	0.0146	0.3213	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,LINC00640->chr14:51800111-51832275:+,long_intergenic_non-protein_coding_RNA_640	HARA_LUNG	0.59	0.66	0.3359	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	MT-ND6--MT-TE	6	2	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0876	0.0292	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HARA_LUNG	0.89	1	0.1168	FALSE	499	1288	110	792	0	FALSE	ACH-000843
HARA_LUNG	C15orf57--CBX3	4	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	22	30	0.33	0.27	0.0584	0.1022	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HARA_LUNG	0.27	0.33	0.1606	TRUE	267	562	48	632	0	FALSE	ACH-000843
HARA_LUNG	DHX40--VMP1	5	2	DHX40	11821	chr17:57665414:+	VMP1	38423	chr17:57915656:+	ONLY_REF_SPLICE	YES	84	250	0.08	0.03	0.073	0.0292	NEIGHBORS[98847],DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HARA_LUNG	0.03	0.08	0.1022	FALSE	0	0	0	2	0	FALSE	ACH-000843
HARA_LUNG	UNKL--CA5AP1	5	2	UNKL	1906	chr16:1463847:-	CA5AP1	31884	chr16:29647649:-	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.073	0.0292	UNKL->chr16:1413206-1464752:-,unkempt_family_like_zinc_finger,CA5AP1->carbonic_anhydrase_5A_pseudogene_1,chr16:29630106-29647649:-	HARA_LUNG	0.78	1	0.1022	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	MT-CO3--MT-ATP6	5	1	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	7	0	0.46	1	0.073	0.0146	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HARA_LUNG	0.46	1	0.0876	FALSE	189	492	56	216	0	FALSE	ACH-000843
HARA_LUNG	MT-CO3--MT-ATP6	5	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HARA_LUNG	1	1	0.073	FALSE	189	492	56	216	0	FALSE	ACH-000843
HARA_LUNG	MT-CO3--MT-ATP6	3	8	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	64	0.92	0.15	0.0438	0.1168	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HARA_LUNG	0.15	0.92	0.1606	FALSE	189	492	56	216	0	FALSE	ACH-000843
HARA_LUNG	MT-TA--MT-TC	5	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HARA_LUNG	1	1	0.073	FALSE	462	80	0	856	0	FALSE	ACH-000843
HARA_LUNG	MT-CO3--MT-ATP6	4	2	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0584	0.0292	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HARA_LUNG	0.86	1	0.0876	FALSE	189	492	56	216	0	FALSE	ACH-000843
HARA_LUNG	MT-ND6--MT-TE	4	2	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0584	0.0292	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HARA_LUNG	0.6	1	0.0876	FALSE	499	1288	110	792	0	FALSE	ACH-000843
HARA_LUNG	MT-ND6--MT-TE	4	2	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0584	0.0292	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HARA_LUNG	0.6	1	0.0876	FALSE	499	1288	110	792	0	FALSE	ACH-000843
HARA_LUNG	RNF103--CD8A	3	6	RNF103	3346	chr2:86847453:-	CD8A	22272	chr2:87015683:-	ONLY_REF_SPLICE	YES	35	2	0.2	0.82	0.0438	0.0876	RNF103->chr2:86830516-86850989:-,ring_finger_protein_103,CD8A->CD8a_molecule,chr2:87011729-87035519:-	HARA_LUNG	0.2	0.82	0.1314	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	CELSR1--EIF4G3	4	1	CELSR1	42665	chr22:46757470:-	EIF4G3	52568	chr1:21415706:-	INCL_NON_REF_SPLICE	YES	56	4	0.08	0.56	0.0584	0.0146	CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	HARA_LUNG	0.08	0.56	0.073	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	MT-CO3--MT-ATP6	3	5	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	8	0.89	0.5	0.0438	0.073	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HARA_LUNG	0.5	0.89	0.1168	FALSE	189	492	56	216	0	FALSE	ACH-000843
HARA_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0584	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HARA_LUNG	1	1	0.0584	FALSE	499	1288	110	792	0	FALSE	ACH-000843
HARA_LUNG	CELSR1--EIF4G3	3	2	CELSR1	42665	chr22:46757470:-	EIF4G3	51507	chr1:21437876:-	INCL_NON_REF_SPLICE	YES	56	4	0.08	0.56	0.0438	0.0292	CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	HARA_LUNG	0.08	0.56	0.073	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	MT-CO3--MT-ATP6	3	2	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	7	0	0.42	1	0.0438	0.0292	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HARA_LUNG	0.42	1	0.073	FALSE	189	492	56	216	0	FALSE	ACH-000843
HARA_LUNG	RNF103--CD8A	1	10	RNF103	10028	chr2:86839282:-	CD8A	23303	chr2:87013094:-	ONLY_REF_SPLICE	YES	36	3	0.23	0.79	0.0146	0.1461	RNF103->chr2:86830516-86850989:-,ring_finger_protein_103,CD8A->CD8a_molecule,chr2:87011729-87035519:-	HARA_LUNG	0.23	0.79	0.1607	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0438	0.0292	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HARA_LUNG	1	1	0.073	FALSE	515	4851	409	746	0	FALSE	ACH-000843
HARA_LUNG	DANCR--PDHX	3	1	DANCR	1530	chr4:53579126:+	PDHX	9281	chr11:34952951:+	ONLY_REF_SPLICE	YES	811	1030	0	0	0.0438	0.0146	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HARA_LUNG	0	0	0.0584	FALSE	0	0	0	1	0	FALSE	ACH-000843
HARA_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HARA_LUNG	1	1	0.0438	FALSE	189	492	56	216	0	FALSE	ACH-000843
HARA_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HARA_LUNG	1	1	0.0438	FALSE	499	1288	110	792	0	FALSE	ACH-000843
HARA_LUNG	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0438	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HARA_LUNG	1	1	0.0438	TRUE	465	1949	224	605	0	FALSE	ACH-000843
HARA_LUNG	TOM1L2--ALDH3A2	2	4	TOM1L2	1161	chr17:17875576:-	ALDH3A2	38582	chr17:19568261:+	ONLY_REF_SPLICE	YES	31	1696	0.16	0	0.0292	0.0584	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,ALDH3A2->aldehyde_dehydrogenase_3_family_member_A2,chr17:19551449-19580911:+	HARA_LUNG	0	0.16	0.0876	FALSE	0	0	0	1	0	FALSE	ACH-000843
HARA_LUNG	CD44--PDHX	2	3	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	5133	1030	0	0	0.0292	0.0438	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HARA_LUNG	0	0	0.073	FALSE	0	20	0	35	2	FALSE	ACH-000843
HARA_LUNG	ERBB4--INTS2	1	7	ERBB4	3912	chr2:212989477:-	INTS2	65807	chr17:59952399:-	ONLY_REF_SPLICE	NO	15	53	0.35	0.13	0.0146	0.1022	ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,INTS2->chr17:59942731-60005377:-,integrator_complex_subunit_2	HARA_LUNG	0.13	0.35	0.1168	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0.0438	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HARA_LUNG	1	1	0.073	FALSE	407	2205	196	549	0	FALSE	ACH-000843
HARA_LUNG	ERBB4--INTS2	2	2	ERBB4	3912	chr2:212989477:-	INTS2	66933	chr17:59949821:-	ONLY_REF_SPLICE	YES	15	61	0.21	0.06	0.0292	0.0292	ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,INTS2->chr17:59942731-60005377:-,integrator_complex_subunit_2	HARA_LUNG	0.06	0.21	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	22333	chr4:98480268:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0.0146	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	HARA_LUNG	1	1	0.0438	TRUE	0	6	0	7	6	TRUE	ACH-000843
HARA_LUNG	ABR--NCKAP1	2	0	ABR	14871	chr17:994905:-	NCKAP1	56442	chr2:183843643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,NCKAP1->NCK_associated_protein_1,chr2:183773843-183903586:-	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	AMOTL1--SESN3	2	0	AMOTL1	2302	chr11:94462221:+	SESN3	34947	chr11:94926686:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+,SESN3->chr11:94898704-94965705:-,sestrin_3	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	B4GALT6--DSG2	2	0	B4GALT6	2519	chr18:29264275:-	DSG2	18686	chr18:29098202:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_INVERSION:-:+:[73239],B4GALT6->beta-1,4-galactosyltransferase_6,chr18:29202210-29265799:-,DSG2->Oncogene{Bushman},chr18:29078006-29128971:+,desmoglein_2	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	CD44--PDHX	1	4	CD44	16863	chr11:35231601:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	NO	5568	1030	0	0	0.0146	0.0584	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HARA_LUNG	0	0	0.073	FALSE	0	0	0	1	0	FALSE	ACH-000843
HARA_LUNG	ERBB4--AC079610.1	2	0	ERBB4	3912	chr2:212989477:-	AC079610.1	50458	chr2:213446132:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:-:[42516],ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,AC079610.1->chr2:213446081-213886269:-	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	2	0	TRUE	ACH-000843
HARA_LUNG	G2E3--SRP54	2	0	G2E3	1150	chr14:31028478:+	SRP54	33444	chr14:35465883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	G2E3->G2/M-phase_specific_E3_ubiquitin_protein_ligase,chr14:31028329-31089269:+,SRP54->chr14:35451163-35498773:+,signal_recognition_particle_54kDa	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	RNF121--HSPD1	2	0	RNF121	10131	chr11:71701763:+	HSPD1	26818	chr2:198353971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,HSPD1->Oncogene{Bushman},chr2:198351305-198381461:-,heat_shock_protein_family_D_(Hsp60)_member_1	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	RPL30--MTDH	2	0	RPL30	2123	chr8:99057575:-	MTDH	20130	chr8:98725890:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,MTDH->chr8:98656407-98740998:+,metadherin	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	TAOK3--SPATS2	2	0	TAOK3	27294	chr12:118619176:-	SPATS2	60249	chr12:49908338:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	TAOK3->TAO_kinase_3,chr12:118587606-118810750:-,SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000843
HARA_LUNG	C3orf55--RSRC1	1	1	C3orf55	2375	chr3:157271129:+	RSRC1	25626	chr3:158015828:+	ONLY_REF_SPLICE	YES	8	124	0.2	0.02	0.0146	0.0146	C3orf55->chr3:157261035-157395538:+,RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+	HARA_LUNG	0.02	0.2	0.0292	TRUE	0	0	0	1	0	FALSE	ACH-000843
HARA_LUNG	DHX40--VMP1	1	1	DHX40	10663	chr17:57663594:+	VMP1	38423	chr17:57915656:+	ONLY_REF_SPLICE	YES	79	250	0.02	0.01	0.0146	0.0146	NEIGHBORS[98847],DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HARA_LUNG	0.01	0.02	0.0292	FALSE	0	0	0	2	0	FALSE	ACH-000843
HARA_LUNG	PDHX--CD44	1	1	PDHX	3068	chr11:34953031:+	CD44	37425	chr11:35236399:+	ONLY_REF_SPLICE	YES	1507	6059	0	0	0.0146	0.0146	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	HARA_LUNG	0	0	0.0292	FALSE	0	0	0	4	0	FALSE	ACH-000843
HARA_LUNG	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0146	0.0146	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	HARA_LUNG	1	1	0.0292	TRUE	0	0	0	4	0	TRUE	ACH-000843
HARA_LUNG	SPINK13--PDHX	1	1	SPINK13	2812	chr5:147649705:+	PDHX	11994	chr11:34952951:+	ONLY_REF_SPLICE	YES	466	1030	0	0	0.0146	0.0146	SPINK13->chr5:147647743-147665817:+,serine_peptidase_inhibitor,_Kazal_type_13_(putative),PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HARA_LUNG	0	0	0.0292	FALSE	0	0	0	1	0	FALSE	ACH-000843
MELJUSO_SKIN	TIMM23B--LINC00843	121	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.6426	0.4073	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MELJUSO_SKIN	0.99	1	2.0499	TRUE	508	994	45	981	0	FALSE	ACH-000881
MELJUSO_SKIN	TIMM23--RP11-464F9.1	58	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	233	2	0.21	0.97	0.7874	0.0543	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MELJUSO_SKIN	0.21	0.97	0.8417	TRUE	519	3926	326	965	0	FALSE	ACH-000881
MELJUSO_SKIN	CTBS--ELAVL4	31	13	CTBS	1242	chr1:85039922:-	ELAVL4	27887	chr1:50659437:+	ONLY_REF_SPLICE	YES	12	0	0.79	1	0.4208	0.1765	CTBS->chitobiase,chr1:85015289-85040163:-,ELAVL4->ELAV_like_neuron-specific_RNA_binding_protein_4,chr1:50513686-50669458:+	MELJUSO_SKIN	0.79	1	0.5973	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	ZNF654--HMGB2	31	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4208	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MELJUSO_SKIN	1	1	0.4208	TRUE	0	0	0	518	0	FALSE	ACH-000881
MELJUSO_SKIN	PLXDC1--TAF13	25	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3394	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	MELJUSO_SKIN	1	1	0.3394	TRUE	7	10	0	216	0	FALSE	ACH-000881
MELJUSO_SKIN	MT-TA--MT-TC	19	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2579	0.0543	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MELJUSO_SKIN	1	1	0.3122	FALSE	462	80	0	856	0	FALSE	ACH-000881
MELJUSO_SKIN	VPS37B--PITPNM2	15	15	VPS37B	5925	chr12:123355437:-	PITPNM2	20171	chr12:123519232:-	ONLY_REF_SPLICE	YES	106	4	0.22	0.88	0.2036	0.2036	LOCAL_REARRANGEMENT:-:[87036],VPS37B->VPS37B,_ESCRT-I_subunit,chr12:123349882-123380991:-,PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2	MELJUSO_SKIN	0.22	0.88	0.4072	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	SLC39A11--LINC00511	13	20	SLC39A11	10819	chr17:70943891:-	LINC00511	39209	chr17:70427365:-	ONLY_REF_SPLICE	YES	78	212	0.3	0.13	0.1765	0.2715	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	MELJUSO_SKIN	0.13	0.3	0.448	FALSE	0	3	0	4	0	FALSE	ACH-000881
MELJUSO_SKIN	MT-ND4--MT-ATP8	14	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1901	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MELJUSO_SKIN	1	1	0.1901	FALSE	230	193	14	283	0	FALSE	ACH-000881
MELJUSO_SKIN	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1765	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MELJUSO_SKIN	1	1	0.1765	TRUE	0	0	0	434	0	FALSE	ACH-000881
MELJUSO_SKIN	C15orf57--CBX3	11	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	43	33	0.3	0.35	0.1493	0.095	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MELJUSO_SKIN	0.3	0.35	0.2443	TRUE	267	562	48	632	0	FALSE	ACH-000881
MELJUSO_SKIN	SLC39A11--LINC00511	5	31	SLC39A11	11043	chr17:70943667:-	LINC00511	39209	chr17:70427365:-	ONLY_REF_SPLICE	YES	74	212	0.33	0.15	0.0679	0.4208	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	MELJUSO_SKIN	0.15	0.33	0.4887	FALSE	0	3	0	4	0	FALSE	ACH-000881
MELJUSO_SKIN	MT-ND6--MT-TE	12	1	MT-ND6	1051	chrM:14623:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1629	0.0136	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MELJUSO_SKIN	1	1	0.1765	FALSE	499	1288	110	792	0	FALSE	ACH-000881
MELJUSO_SKIN	VPS37B--PITPNM2	9	11	VPS37B	5925	chr12:123355437:-	PITPNM2	20205	chr12:123519198:-	INCL_NON_REF_SPLICE	YES	106	9	0.16	0.69	0.1222	0.1493	LOCAL_REARRANGEMENT:-:[87036],VPS37B->VPS37B,_ESCRT-I_subunit,chr12:123349882-123380991:-,PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2	MELJUSO_SKIN	0.16	0.69	0.2715	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	SLC39A11--LINC00511	5	25	SLC39A11	10840	chr17:70943870:-	LINC00511	39209	chr17:70427365:-	ONLY_REF_SPLICE	YES	86	212	0.26	0.12	0.0679	0.3394	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	MELJUSO_SKIN	0.12	0.26	0.4073	FALSE	0	3	0	4	0	FALSE	ACH-000881
MELJUSO_SKIN	MT-ND4--MT-ATP8	10	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1358	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MELJUSO_SKIN	1	1	0.1358	FALSE	230	198	14	283	0	FALSE	ACH-000881
MELJUSO_SKIN	C15orf57--CBX3	7	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	44	32	0.29	0.36	0.095	0.1493	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MELJUSO_SKIN	0.29	0.36	0.2443	TRUE	267	562	48	632	0	FALSE	ACH-000881
MELJUSO_SKIN	MT-ND6--MT-TE	9	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1222	0.0272	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MELJUSO_SKIN	1	1	0.1494	FALSE	499	1288	110	792	0	FALSE	ACH-000881
MELJUSO_SKIN	MT-ND4--MT-ATP8	9	1	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	11257	1423	0	0.01	0.1222	0.0136	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MELJUSO_SKIN	0	0.01	0.1358	FALSE	231	217	16	283	0	FALSE	ACH-000881
MELJUSO_SKIN	VPS37B--PITPNM2	7	9	VPS37B	1493	chr12:123380499:-	PITPNM2	20171	chr12:123519232:-	ONLY_REF_SPLICE	YES	158	4	0.09	0.8	0.095	0.1222	LOCAL_REARRANGEMENT:-:[87036],VPS37B->VPS37B,_ESCRT-I_subunit,chr12:123349882-123380991:-,PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2	MELJUSO_SKIN	0.09	0.8	0.2172	TRUE	0	1	0	2	1	TRUE	ACH-000881
MELJUSO_SKIN	MT-ND6--MT-TE	8	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1086	0.0272	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MELJUSO_SKIN	1	1	0.1358	FALSE	499	1288	110	792	0	FALSE	ACH-000881
MELJUSO_SKIN	SLC39A11--LINC00511	5	14	SLC39A11	10840	chr17:70943870:-	LINC00511	40306	chr17:70424439:-	ONLY_REF_SPLICE	YES	86	221	0.18	0.08	0.0679	0.1901	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	MELJUSO_SKIN	0.08	0.18	0.258	FALSE	0	2	0	3	0	FALSE	ACH-000881
MELJUSO_SKIN	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.095	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MELJUSO_SKIN	1	1	0.095	FALSE	462	80	0	856	0	FALSE	ACH-000881
MELJUSO_SKIN	MT-ND6--MT-TE	6	2	MT-ND6	1092	chrM:14582:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0.0272	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MELJUSO_SKIN	1	1	0.1087	FALSE	499	1288	110	792	0	FALSE	ACH-000881
MELJUSO_SKIN	RP11-444D3.1--SOX5	5	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0679	0.0407	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MELJUSO_SKIN	0.89	1	0.1086	TRUE	477	1352	189	275	0	FALSE	ACH-000881
MELJUSO_SKIN	SLC39A11--LINC00511	2	15	SLC39A11	11043	chr17:70943667:-	LINC00511	40306	chr17:70424439:-	ONLY_REF_SPLICE	YES	74	221	0.19	0.07	0.0272	0.2036	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	MELJUSO_SKIN	0.07	0.19	0.2308	FALSE	0	2	0	3	0	FALSE	ACH-000881
MELJUSO_SKIN	VPS37B--PITPNM2	4	7	VPS37B	1493	chr12:123380499:-	PITPNM2	20205	chr12:123519198:-	INCL_NON_REF_SPLICE	YES	158	9	0.07	0.55	0.0543	0.095	LOCAL_REARRANGEMENT:-:[87036],VPS37B->VPS37B,_ESCRT-I_subunit,chr12:123349882-123380991:-,PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2	MELJUSO_SKIN	0.07	0.55	0.1493	TRUE	0	1	0	2	1	TRUE	ACH-000881
MELJUSO_SKIN	SLC39A11--LINC00511	3	10	SLC39A11	10819	chr17:70943891:-	LINC00511	40306	chr17:70424439:-	ONLY_REF_SPLICE	YES	78	221	0.14	0.06	0.0407	0.1358	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	MELJUSO_SKIN	0.06	0.14	0.1765	FALSE	0	2	0	3	0	FALSE	ACH-000881
MELJUSO_SKIN	HSP90AB1--MT-RNR2	5	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3020	0	0	1	0.0679	0.0136	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MELJUSO_SKIN	0	1	0.0815	FALSE	13	9	0	364	0	FALSE	ACH-000881
MELJUSO_SKIN	RP11-123O10.4--GRIP1	5	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0679	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MELJUSO_SKIN	1	1	0.0679	FALSE	416	2512	207	587	0	FALSE	ACH-000881
MELJUSO_SKIN	RP4-565E6.1--HYDIN	5	0	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0679	0	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	MELJUSO_SKIN	1	1	0.0679	TRUE	456	1387	91	133	0	FALSE	ACH-000881
MELJUSO_SKIN	C15orf57--CBX3	3	7	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	43	33	0.19	0.23	0.0407	0.095	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MELJUSO_SKIN	0.19	0.23	0.1357	TRUE	267	562	48	632	0	FALSE	ACH-000881
MELJUSO_SKIN	HSP90AB1--MT-RNR2	4	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2993	0	0	1	0.0543	0.0136	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MELJUSO_SKIN	0	1	0.0679	FALSE	13	9	0	364	0	FALSE	ACH-000881
MELJUSO_SKIN	XPR1--KIAA1614	4	0	XPR1	2319	chr1:180651547:+	KIAA1614	43383	chr1:180919476:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0543	0	NEIGHBORS[22903],XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,KIAA1614->KIAA1614,chr1:180882290-180920750:+	MELJUSO_SKIN	1	1	0.0543	FALSE	0	0	0	1	0	FALSE	ACH-000881
MELJUSO_SKIN	MT-ND6--MT-TE	3	3	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0.0407	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MELJUSO_SKIN	1	1	0.0814	FALSE	499	1288	110	792	0	FALSE	ACH-000881
MELJUSO_SKIN	MT-ND4--MT-ATP8	3	1	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	12665	0	0	1	0.0407	0.0136	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MELJUSO_SKIN	0	1	0.0543	FALSE	231	217	16	283	0	FALSE	ACH-000881
MELJUSO_SKIN	MT-ND4--MT-ATP8	3	1	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	12561	0	0	1	0.0407	0.0136	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MELJUSO_SKIN	0	1	0.0543	FALSE	231	217	16	283	0	FALSE	ACH-000881
MELJUSO_SKIN	MT-ND4--MT-ATP8	3	1	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	12964	0	0	1	0.0407	0.0136	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MELJUSO_SKIN	0	1	0.0543	FALSE	231	217	16	283	0	FALSE	ACH-000881
MELJUSO_SKIN	NPM1P24--SET	3	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	31	786	0.11	0.01	0.0407	0.0136	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MELJUSO_SKIN	0.01	0.11	0.0543	FALSE	0	0	0	434	0	FALSE	ACH-000881
MELJUSO_SKIN	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	NO	31	782	0.11	0.01	0.0407	0.0136	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MELJUSO_SKIN	0.01	0.11	0.0543	FALSE	0	0	0	434	0	FALSE	ACH-000881
MELJUSO_SKIN	C22orf34--BRD1	3	0	C22orf34	1138	chr22:50051053:-	BRD1	33667	chr22:50171461:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	C22orf34->chr22:49808176-50051190:-,chromosome_22_open_reading_frame_34,BRD1->bromodomain_containing_1,chr22:50166931-50221160:-	MELJUSO_SKIN	1	1	0.0407	TRUE	0	0	0	2	0	TRUE	ACH-000881
MELJUSO_SKIN	MAD1L1--C7orf50	3	0	MAD1L1	35008	chr7:1937836:-	C7orf50	52899	chr7:1049779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	MELJUSO_SKIN	1	1	0.0407	TRUE	0	3	0	2	0	TRUE	ACH-000881
MELJUSO_SKIN	NDUFA4--PHF14	3	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	MELJUSO_SKIN	1	1	0.0407	TRUE	19	32	3	60	0	FALSE	ACH-000881
MELJUSO_SKIN	PASK--HDLBP	3	0	PASK	18010	chr2:242062147:-	HDLBP	37105	chr2:242207956:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	LOCAL_REARRANGEMENT:-:[77000],PASK->PAS_domain_containing_serine/threonine_kinase,chr2:242045514-242089679:-,HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein	MELJUSO_SKIN	1	1	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	MELJUSO_SKIN	1	1	0.0407	TRUE	22	156	2	142	0	FALSE	ACH-000881
MELJUSO_SKIN	RP11-476K15.1--CTD-2015H3.2	3	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	MELJUSO_SKIN	1	1	0.0407	FALSE	0	46	0	73	0	FALSE	ACH-000881
MELJUSO_SKIN	RP11-476K15.1--CTD-2015H3.2	3	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	MELJUSO_SKIN	1	1	0.0407	FALSE	0	46	0	73	0	FALSE	ACH-000881
MELJUSO_SKIN	SBNO2--DAZAP1	3	0	SBNO2	1112	chr19:1174171:-	DAZAP1	32349	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	GTEx_FI:{Skin=[count:2=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Lung=1,Minor_Salivary_Gland=1,Liver=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	MELJUSO_SKIN	1	1	0.0407	TRUE	4	1	0	5	0	FALSE	ACH-000881
MELJUSO_SKIN	RP11-444D3.1--SOX5	2	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0272	0.0407	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MELJUSO_SKIN	0.83	1	0.0679	TRUE	274	363	69	150	0	FALSE	ACH-000881
MELJUSO_SKIN	SLC39A11--LINC00511	1	7	SLC39A11	11043	chr17:70943667:-	LINC00511	43739	chr17:70417105:-	ONLY_REF_SPLICE	YES	74	222	0.1	0.03	0.0136	0.095	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	MELJUSO_SKIN	0.03	0.1	0.1086	FALSE	0	0	0	1	0	FALSE	ACH-000881
MELJUSO_SKIN	SLC39A11--LINC00511	1	6	SLC39A11	11043	chr17:70943667:-	LINC00511	45004	chr17:70400957:-	ONLY_REF_SPLICE	YES	74	197	0.09	0.03	0.0136	0.0815	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	MELJUSO_SKIN	0.03	0.09	0.0951	FALSE	0	0	0	1	0	FALSE	ACH-000881
MELJUSO_SKIN	C22orf34--TBC1D22A	2	1	C22orf34	1138	chr22:50051053:-	TBC1D22A	40141	chr22:47569141:+	ONLY_REF_SPLICE	YES	1	45	0.75	0.06	0.0272	0.0136	C22orf34->chr22:49808176-50051190:-,chromosome_22_open_reading_frame_34,TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+	MELJUSO_SKIN	0.06	0.75	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	DANCR--TBCA	2	1	DANCR	1530	chr4:53579126:+	TBCA	10958	chr5:77004172:-	ONLY_REF_SPLICE	NO	310	684	0.01	0	0.0272	0.0136	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	MELJUSO_SKIN	0	0.01	0.0408	FALSE	0	0	0	1	0	FALSE	ACH-000881
MELJUSO_SKIN	FAM20C--C7orf50	2	1	FAM20C	3327	chr7:195732:+	C7orf50	27128	chr7:1049779:-	ONLY_REF_SPLICE	YES	185	250	0.02	0.01	0.0272	0.0136	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	MELJUSO_SKIN	0.01	0.02	0.0408	FALSE	0	1	0	1	0	FALSE	ACH-000881
MELJUSO_SKIN	FAM20C--DAZAP1	2	1	FAM20C	5852	chr7:208976:+	DAZAP1	21512	chr19:1417499:+	ONLY_REF_SPLICE	YES	116	165	0.03	0.02	0.0272	0.0136	FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	MELJUSO_SKIN	0.02	0.03	0.0408	TRUE	0	0	0	3	0	FALSE	ACH-000881
MELJUSO_SKIN	FBXO42--DLD	2	1	FBXO42	2467	chr1:16641664:-	DLD	32085	chr7:107559455:+	ONLY_REF_SPLICE	YES	29	231	0.09	0.01	0.0272	0.0136	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,DLD->chr7:107531415-107572175:+,dihydrolipoamide_dehydrogenase	MELJUSO_SKIN	0.01	0.09	0.0408	FALSE	0	0	0	1	0	FALSE	ACH-000881
MELJUSO_SKIN	PASK--HDLBP	2	1	PASK	19381	chr2:242054458:-	HDLBP	37105	chr2:242207956:-	ONLY_REF_SPLICE	YES	40	149	0.07	0.02	0.0272	0.0136	LOCAL_REARRANGEMENT:-:[77000],PASK->PAS_domain_containing_serine/threonine_kinase,chr2:242045514-242089679:-,HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein	MELJUSO_SKIN	0.02	0.07	0.0408	TRUE	0	0	0	1	0	FALSE	ACH-000881
MELJUSO_SKIN	RP11-634B7.4--TRIM58	2	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	9	1	0.25	0.0272	0.0136	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	MELJUSO_SKIN	0.25	1	0.0408	TRUE	158	633	76	73	0	FALSE	ACH-000881
MELJUSO_SKIN	SLC39A11--LINC00511	2	1	SLC39A11	9695	chr17:70989030:-	LINC00511	40306	chr17:70424439:-	ONLY_REF_SPLICE	YES	20	221	0.13	0.01	0.0272	0.0136	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	MELJUSO_SKIN	0.01	0.13	0.0408	FALSE	0	0	0	1	0	FALSE	ACH-000881
MELJUSO_SKIN	SLC39A11--LINC00511	2	1	SLC39A11	9695	chr17:70989030:-	LINC00511	39209	chr17:70427365:-	ONLY_REF_SPLICE	YES	20	212	0.13	0.01	0.0272	0.0136	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	MELJUSO_SKIN	0.01	0.13	0.0408	FALSE	0	0	0	3	0	FALSE	ACH-000881
MELJUSO_SKIN	TYR--MXI1	2	1	TYR	3538	chr11:88924586:+	MXI1	17518	chr10:111987947:+	ONLY_REF_SPLICE	YES	326	66	0.01	0.04	0.0272	0.0136	TYR->chr11:88910620-89028927:+,tyrosinase,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	MELJUSO_SKIN	0.01	0.04	0.0408	FALSE	0	4	0	4	0	FALSE	ACH-000881
MELJUSO_SKIN	ZC3H3--EEF1D	2	1	ZC3H3	4593	chr8:144618427:-	EEF1D	28612	chr8:144669019:-	ONLY_REF_SPLICE	YES	20	105	0.13	0.03	0.0272	0.0136	GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[38244],ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	MELJUSO_SKIN	0.03	0.13	0.0408	TRUE	3	0	0	4	0	FALSE	ACH-000881
MELJUSO_SKIN	C17orf76-AS1--DAG1	2	0	C17orf76-AS1	1593	chr17:16342728:+	DAG1	21282	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	C17orf76-AS1->chr17:16342136-16381992:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	MELJUSO_SKIN	1	1	0.0272	TRUE	0	0	0	2	0	TRUE	ACH-000881
MELJUSO_SKIN	C17orf76-AS1--PHF20	2	0	C17orf76-AS1	1593	chr17:16342728:+	PHF20	16671	chr20:34389413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	C17orf76-AS1->chr17:16342136-16381992:+,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	MELJUSO_SKIN	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	C17orf76-AS1--PTCD3	2	0	C17orf76-AS1	1593	chr17:16342728:+	PTCD3	33495	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	MELJUSO_SKIN	1	1	0.0272	TRUE	0	3	0	8	0	TRUE	ACH-000881
MELJUSO_SKIN	CD44--PDHX	2	0	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	MELJUSO_SKIN	1	1	0.0272	TRUE	0	7	0	19	1	TRUE	ACH-000881
MELJUSO_SKIN	KM-PA-2--CFL1	2	0	KM-PA-2	1054	chr8:145331100:-	CFL1	12970	chr11:65623713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	KM-PA-2->chr8:145317003-145331153:-,CFL1->chr11:65590493-65629497:-,cofilin_1	MELJUSO_SKIN	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	OSBPL5--TSPAN4	2	0	OSBPL5	2524	chr11:3186446:-	TSPAN4	35450	chr11:850288:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,TSPAN4->chr11:842808-867116:+,tetraspanin_4	MELJUSO_SKIN	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	RP3-510D11.1--ACOT7	2	0	RP3-510D11.1	3450	chr1:9242066:-	ACOT7	21449	chr1:6355040:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	RP3-510D11.1->chr1:9242066-9262678:-,ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-	MELJUSO_SKIN	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	TNFRSF12A--PSKH1	2	0	TNFRSF12A	2272	chr16:3070492:+	PSKH1	9379	chr16:67942583:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	TNFRSF12A->chr16:3068446-3072384:+,tumor_necrosis_factor_receptor_superfamily_member_12A,PSKH1->chr16:67927175-67963581:+,protein_serine_kinase_H1	MELJUSO_SKIN	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	TTYH3--MAD1L1	2	0	TTYH3	1328	chr7:2671912:+	MAD1L1	58511	chr7:1855864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	MELJUSO_SKIN	1	1	0.0272	TRUE	0	7	0	2	1	TRUE	ACH-000881
MELJUSO_SKIN	TTYH3--MAD1L1	2	0	TTYH3	10024	chr7:2696168:+	MAD1L1	58511	chr7:1855864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	MELJUSO_SKIN	1	1	0.0272	TRUE	0	1	0	2	0	TRUE	ACH-000881
MELJUSO_SKIN	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	1	1	0.8	0.0136	0.0407	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MELJUSO_SKIN	0.8	1	0.0543	TRUE	160	277	29	98	0	FALSE	ACH-000881
MELJUSO_SKIN	KCNAB2--ACOT7	1	2	KCNAB2	11901	chr1:6100705:+	ACOT7	42908	chr1:6409926:-	ONLY_REF_SPLICE	YES	191	675	0.02	0	0.0136	0.0272	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-	MELJUSO_SKIN	0	0.02	0.0408	FALSE	0	2	0	2	0	FALSE	ACH-000881
MELJUSO_SKIN	ZC3H3--EEF1D	1	2	ZC3H3	5747	chr8:144589916:-	EEF1D	28609	chr8:144669022:-	ONLY_REF_SPLICE	YES	15	109	0.17	0.03	0.0136	0.0272	GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[38244],ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	MELJUSO_SKIN	0.03	0.17	0.0408	TRUE	1	0	0	2	0	FALSE	ACH-000881
MELJUSO_SKIN	AC002116.7--MFSD12	1	1	AC002116.7	3379	chr19:36510286:+	MFSD12	22580	chr19:3538754:-	ONLY_REF_SPLICE	YES	0	1452	1	0	0.0136	0.0136	AC002116.7->chr19:36505410-36536874:+,MFSD12->chr19:3538259-3574288:-,major_facilitator_superfamily_domain_containing_12	MELJUSO_SKIN	0	1	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000881
MELJUSO_SKIN	BSG--PTBP1	1	1	BSG	2405	chr19:572701:+	PTBP1	15804	chr19:799413:+	ONLY_REF_SPLICE	YES	247	11	0.01	0.15	0.0136	0.0136	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	MELJUSO_SKIN	0.01	0.15	0.0272	FALSE	0	0	0	2	0	FALSE	ACH-000881
MELJUSO_SKIN	BSG--PTBP1	1	1	BSG	2405	chr19:572701:+	PTBP1	16835	chr19:803561:+	ONLY_REF_SPLICE	NO	247	102	0.01	0.02	0.0136	0.0136	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	MELJUSO_SKIN	0.01	0.02	0.0272	FALSE	0	0	0	2	0	FALSE	ACH-000881
MELJUSO_SKIN	C7orf50--MAD1L1	1	1	C7orf50	3078	chr7:1166893:-	MAD1L1	50779	chr7:1938026:-	ONLY_REF_SPLICE	YES	241	198	0.01	0.01	0.0136	0.0136	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	MELJUSO_SKIN	0.01	0.01	0.0272	FALSE	0	1	0	6	0	FALSE	ACH-000881
MELJUSO_SKIN	CTNNB1--ULK4	1	1	CTNNB1	4607	chr3:41241872:+	ULK4	58704	chr3:41657208:-	ONLY_REF_SPLICE	YES	924	0	0	1	0.0136	0.0136	GTEx_v2:{count=8;pct=0.09%;dist=Heart_-_Atrial_Appendage=2,Lung=1,Prostate=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Colon_-_Transverse=1},NEIGHBORS_OVERLAP:+:-:[13497],CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	MELJUSO_SKIN	0	1	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000881
MELJUSO_SKIN	FAM20C--PRKAR1B	1	1	FAM20C	5852	chr7:208976:+	PRKAR1B	22217	chr7:751164:-	ONLY_REF_SPLICE	NO	116	2	0.02	0.5	0.0136	0.0136	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cortex=1},{Klijn_CCL:Skin=1},FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	MELJUSO_SKIN	0.02	0.5	0.0272	TRUE	0	0	0	2	0	FALSE	ACH-000881
MELJUSO_SKIN	FMNL2--PRPF40A	1	1	FMNL2	1484	chr2:153192234:+	PRPF40A	39632	chr2:153551136:-	ONLY_REF_SPLICE	YES	26	107	0.07	0.02	0.0136	0.0136	LOCAL_INVERSION:+:-:[1759],FMNL2->chr2:153191751-153506348:+,formin_like_2,PRPF40A->chr2:153508107-153574511:-,pre-mRNA_processing_factor_40_homolog_A	MELJUSO_SKIN	0.02	0.07	0.0272	TRUE	0	0	0	1	0	FALSE	ACH-000881
MELJUSO_SKIN	FOSL1--TSPAN4	1	1	FOSL1	1333	chr11:65667712:-	TSPAN4	13994	chr11:850288:+	ONLY_REF_SPLICE	NO	523	359	0	0.01	0.0136	0.0136	FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,TSPAN4->chr11:842808-867116:+,tetraspanin_4	MELJUSO_SKIN	0	0.01	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000881
MELJUSO_SKIN	GALNT2--ADSS	1	1	GALNT2	2488	chr1:230203153:+	ADSS	27461	chr1:244601070:-	ONLY_REF_SPLICE	YES	389	144	0.01	0.01	0.0136	0.0136	GALNT2->chr1:230193536-230417870:+,polypeptide_N-acetylgalactosaminyltransferase_2,ADSS->adenylosuccinate_synthase,chr1:244571796-244615436:-	MELJUSO_SKIN	0.01	0.01	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000881
MELJUSO_SKIN	GALNT2--C1orf198	1	1	GALNT2	2488	chr1:230203153:+	C1orf198	28787	chr1:230991464:-	ONLY_REF_SPLICE	YES	389	41	0.01	0.05	0.0136	0.0136	{Klijn_CCL:Kidney=1},GALNT2->chr1:230193536-230417870:+,polypeptide_N-acetylgalactosaminyltransferase_2,C1orf198->chr1:230972865-231005335:-,chromosome_1_open_reading_frame_198	MELJUSO_SKIN	0.01	0.05	0.0272	FALSE	0	0	0	3	0	FALSE	ACH-000881
MELJUSO_SKIN	KCNAB2--ACOT7	1	1	KCNAB2	11901	chr1:6100705:+	ACOT7	54236	chr1:6324755:-	ONLY_REF_SPLICE	YES	191	607	0.01	0	0.0136	0.0136	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-	MELJUSO_SKIN	0	0.01	0.0272	FALSE	0	2	0	3	0	FALSE	ACH-000881
MELJUSO_SKIN	KCTD10--CORO1C	1	1	KCTD10	4148	chr12:109907320:-	CORO1C	22766	chr12:109095099:-	ONLY_REF_SPLICE	NO	69	16	0.03	0.11	0.0136	0.0136	KCTD10->chr12:109886461-109915349:-,potassium_channel_tetramerization_domain_containing_10,CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C	MELJUSO_SKIN	0.03	0.11	0.0272	TRUE	0	0	0	1	0	FALSE	ACH-000881
MELJUSO_SKIN	NCOR2--UBC	1	1	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	39	33	0.05	0.06	0.0136	0.0136	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	MELJUSO_SKIN	0.05	0.06	0.0272	TRUE	52	148	13	33	0	FALSE	ACH-000881
MELJUSO_SKIN	NFATC1--CTDP1	1	1	NFATC1	4753	chr18:77171501:+	CTDP1	27946	chr18:77455225:+	ONLY_REF_SPLICE	YES	18	6	0.1	0.25	0.0136	0.0136	GTEx_FI:{Blood=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},NFATC1->Oncogene{Bushman},chr18:77155856-77289325:+,nuclear_factor_of_activated_T-cells_1,CTDP1->CTD_phosphatase_subunit_1,chr18:77439801-77514510:+	MELJUSO_SKIN	0.1	0.25	0.0272	TRUE	1	0	0	1	0	TRUE	ACH-000881
MELJUSO_SKIN	UVSSA--CTBP1	1	1	UVSSA	8854	chr4:1360219:+	CTBP1	25235	chr4:1232125:-	ONLY_REF_SPLICE	YES	9	95	0.18	0.02	0.0136	0.0136	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	MELJUSO_SKIN	0.02	0.18	0.0272	TRUE	1	0	0	4	0	FALSE	ACH-000881
MELJUSO_SKIN	ZC3H3--EEF1D	1	1	ZC3H3	5747	chr8:144589916:-	EEF1D	28612	chr8:144669019:-	ONLY_REF_SPLICE	YES	15	105	0.12	0.02	0.0136	0.0136	GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[38244],ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	MELJUSO_SKIN	0.02	0.12	0.0272	TRUE	1	0	0	2	0	FALSE	ACH-000881
MELJUSO_SKIN	ZC3H3--EEF1D	1	1	ZC3H3	4593	chr8:144618427:-	EEF1D	25643	chr8:144672251:-	ONLY_REF_SPLICE	NO	20	97	0.09	0.02	0.0136	0.0136	GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[38244],ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	MELJUSO_SKIN	0.02	0.09	0.0272	TRUE	0	0	0	1	0	FALSE	ACH-000881
ESS1_ENDOMETRIUM	TIMM23B--LINC00843	113	55	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3176	0.6413	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ESS1_ENDOMETRIUM	1	1	1.9589	TRUE	508	994	45	981	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	TIMM23--RP11-464F9.1	66	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	425	6	0.15	0.92	0.7695	0.0816	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ESS1_ENDOMETRIUM	0.15	0.92	0.8511	TRUE	519	3926	326	965	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND6--MT-TE	45	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5247	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ESS1_ENDOMETRIUM	1	1	0.5247	FALSE	499	1288	110	792	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND6--MT-TE	32	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.3731	0.0117	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ESS1_ENDOMETRIUM	0.97	1	0.3848	FALSE	499	1288	110	792	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	ZNF654--HMGB2	32	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3731	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	ESS1_ENDOMETRIUM	1	1	0.3731	TRUE	0	0	0	518	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND4--MT-ND4L	15	61	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	8786	0	0.01	1	0.1749	0.7113	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ESS1_ENDOMETRIUM	0.01	1	0.8862	FALSE	344	827	44	306	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND4--MT-ND4L	4	87	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	17	2	0.84	0.98	0.0466	1.0144	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ESS1_ENDOMETRIUM	0.84	0.98	1.061	FALSE	344	826	44	306	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND4--MT-ND4L	3	90	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	39	0	0.7	1	0.035	1.0494	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ESS1_ENDOMETRIUM	0.7	1	1.0844	FALSE	344	826	44	306	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND6--MT-TE	25	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2915	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ESS1_ENDOMETRIUM	1	1	0.2915	FALSE	499	1288	110	792	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND4--MT-ND4L	7	66	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	6	2	0.92	0.97	0.0816	0.7695	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ESS1_ENDOMETRIUM	0.92	0.97	0.8511	FALSE	344	826	44	306	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND4--MT-ND4L	3	52	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	2	0.93	0.96	0.035	0.6063	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ESS1_ENDOMETRIUM	0.93	0.96	0.6413	FALSE	344	821	44	306	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND4--MT-ND4L	11	14	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	91	0	0.22	1	0.1283	0.1632	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ESS1_ENDOMETRIUM	0.22	1	0.2915	FALSE	344	827	44	306	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1399	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	ESS1_ENDOMETRIUM	1	1	0.1399	TRUE	46	1352	75	139	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND4--MT-ND4L	4	29	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1064	0	0.03	1	0.0466	0.3381	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ESS1_ENDOMETRIUM	0.03	1	0.3847	FALSE	344	827	44	306	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND4--MT-ND4L	4	27	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	72	0	0.3	1	0.0466	0.3148	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ESS1_ENDOMETRIUM	0.3	1	0.3614	FALSE	344	827	44	306	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-CO3--MT-ATP6	10	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	6	0	0.67	1	0.1166	0.0233	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ESS1_ENDOMETRIUM	0.67	1	0.1399	FALSE	189	492	56	216	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND4--MT-ND4L	4	26	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	38	0	0.44	1	0.0466	0.3032	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ESS1_ENDOMETRIUM	0.44	1	0.3498	FALSE	344	826	44	306	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	RP11-123O10.4--GRIP1	8	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0933	0.0933	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ESS1_ENDOMETRIUM	1	1	0.1866	FALSE	416	2512	207	587	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND4--MT-ND4L	4	22	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	4	0	0.87	1	0.0466	0.2565	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ESS1_ENDOMETRIUM	0.87	1	0.3031	FALSE	344	821	44	306	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND4--MT-ND4L	7	8	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0816	0.0933	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ESS1_ENDOMETRIUM	0.94	1	0.1749	FALSE	344	821	44	306	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-CO3--MT-ATP6	6	10	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	13	1	0.55	0.07	0.1166	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ESS1_ENDOMETRIUM	0.55	1	0.1866	FALSE	189	492	56	216	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	7	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.0816	0.07	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ESS1_ENDOMETRIUM	0.81	1	0.1516	FALSE	515	4851	409	746	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND4--MT-ND4L	5	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	38	0	0.32	1	0.0583	0.1516	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ESS1_ENDOMETRIUM	0.32	1	0.2099	FALSE	344	826	44	306	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-TA--MT-TC	8	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0933	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ESS1_ENDOMETRIUM	1	1	0.0933	FALSE	462	80	0	856	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND4--MT-ND4L	3	19	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	41	0	0.35	1	0.035	0.2215	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ESS1_ENDOMETRIUM	0.35	1	0.2565	FALSE	344	826	44	306	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND6--MT-TE	7	3	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0816	0.035	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ESS1_ENDOMETRIUM	0.91	1	0.1166	FALSE	499	1288	110	792	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND6--MT-TE	7	2	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0816	0.0233	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ESS1_ENDOMETRIUM	0.82	1	0.1049	FALSE	499	1288	110	792	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND4--MT-ND4L	7	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0816	0.0117	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ESS1_ENDOMETRIUM	0.8	1	0.0933	FALSE	344	821	44	306	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND6--MT-TE	6	4	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.07	0.0466	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ESS1_ENDOMETRIUM	0.83	1	0.1166	FALSE	499	1288	110	792	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND6--MT-TE	6	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.07	0.0466	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ESS1_ENDOMETRIUM	1	1	0.1166	FALSE	499	1288	110	792	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-CO3--MT-ATP6	6	2	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	5	3	0.62	0.73	0.07	0.0233	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ESS1_ENDOMETRIUM	0.62	0.73	0.0933	FALSE	189	492	56	216	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.07	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ESS1_ENDOMETRIUM	1	1	0.07	FALSE	462	80	0	856	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.07	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ESS1_ENDOMETRIUM	1	1	0.07	FALSE	292	1546	117	613	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND6--MT-TE	4	6	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0.07	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ESS1_ENDOMETRIUM	1	1	0.1166	FALSE	499	1288	110	792	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-CO3--MT-ATP6	5	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ESS1_ENDOMETRIUM	1	1	0.0583	FALSE	189	492	56	216	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND4--MT-ND4L	3	8	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	8	0	0.58	1	0.035	0.0933	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ESS1_ENDOMETRIUM	0.58	1	0.1283	FALSE	344	826	44	306	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	NRIP1--AF127936.7	3	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.38	1	0.035	0.07	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ESS1_ENDOMETRIUM	0.38	1	0.105	FALSE	164	806	69	479	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.035	0.07	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ESS1_ENDOMETRIUM	1	1	0.105	FALSE	467	2173	244	435	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-CO3--MT-ATP6	3	5	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	5	4	0.62	0.67	0.035	0.0583	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ESS1_ENDOMETRIUM	0.62	0.67	0.0933	FALSE	189	492	56	216	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ESS1_ENDOMETRIUM	1	1	0.0466	FALSE	499	1288	110	792	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ESS1_ENDOMETRIUM	1	1	0.0466	FALSE	499	1288	110	792	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	PRR16--CTD-2334D19.1	3	4	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	26	1	0.21	0.88	0.035	0.0466	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	ESS1_ENDOMETRIUM	0.21	0.88	0.0816	FALSE	21	45	1	60	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	RP11-120D5.1--MID1	4	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	ESS1_ENDOMETRIUM	1	1	0.0466	FALSE	16	356	14	466	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-CO3--MT-ATP6	3	3	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.67	0.035	0.035	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ESS1_ENDOMETRIUM	0.67	1	0.07	FALSE	189	492	56	216	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-CO3--MT-ATP6	3	2	MT-CO3	1173	chrM:9379:+	MT-ATP6	5450	chrM:9192:+	INCL_NON_REF_SPLICE	YES	9	3	0.36	0.62	0.035	0.0233	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ESS1_ENDOMETRIUM	0.36	0.62	0.0583	FALSE	189	492	56	216	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-CO3--MT-ATP6	3	2	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	11	0	0.31	1	0.035	0.0233	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ESS1_ENDOMETRIUM	0.31	1	0.0583	FALSE	189	492	56	216	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND4--MT-ND4L	3	1	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	NO	2	0	0.67	1	0.035	0.0117	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ESS1_ENDOMETRIUM	0.67	1	0.0467	FALSE	344	821	44	306	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	ACTB--MFSD10	3	0	ACTB	4493	chr7:5570155:-	MFSD10	11782	chr4:2935671:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.035	0	ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,MFSD10->chr4:2932288-2936586:-,major_facilitator_superfamily_domain_containing_10	ESS1_ENDOMETRIUM	1	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1261	chrM:14413:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ESS1_ENDOMETRIUM	1	1	0.035	FALSE	499	1288	110	792	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ESS1_ENDOMETRIUM	1	1	0.035	FALSE	499	1288	110	792	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	ESS1_ENDOMETRIUM	1	1	0.035	TRUE	22	156	2	142	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	PRR16--CTD-2334D19.1	2	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	61	1	0.05	0.75	0.0233	0.0117	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	ESS1_ENDOMETRIUM	0.05	0.75	0.035	FALSE	56	216	12	147	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	ACAD11--DNAJC13	2	0	ACAD11	2121	chr3:132378447:-	DNAJC13	76098	chr3:132244454:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[19106],ACAD11->acyl-CoA_dehydrogenase_family_member_11,chr3:132276982-132379567:-,DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000913
ESS1_ENDOMETRIUM	APIP--PHKB	2	0	APIP	1272	chr11:34937775:-	PHKB	55275	chr16:47722952:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	APIP->APAF1_interacting_protein,chr11:34874641-34938046:-,PHKB->chr16:47495034-47735434:+,phosphorylase_kinase_beta_subunit	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	1	0	1	1	TRUE	ACH-000913
ESS1_ENDOMETRIUM	CPSF6--CEP170	2	0	CPSF6	11046	chr12:69656342:+	CEP170	50648	chr1:243289436:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000913
ESS1_ENDOMETRIUM	DNAJC25--UGCG	2	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	50	73	10	50	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	DOCK6--GABPA	2	0	DOCK6	1085	chr19:11373073:-	GABPA	43026	chr21:27113884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	DOCK6->chr19:11309971-11373157:-,dedicator_of_cytokinesis_6,GABPA->GA_binding_protein_transcription_factor_alpha_subunit,chr21:27106881-27144771:+	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000913
ESS1_ENDOMETRIUM	KLC1--WBP1	2	0	KLC1	13440	chr14:104145855:+	WBP1	26016	chr2:74686124:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,WBP1->WW_domain_binding_protein_1,chr2:74685456-74688018:+	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000913
ESS1_ENDOMETRIUM	NAP1L1--CREM	2	0	NAP1L1	4722	chr12:76462689:-	CREM	43018	chr10:35500584:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000913
ESS1_ENDOMETRIUM	PPP6C--CLIC3	2	0	PPP6C	1296	chr9:127951923:-	CLIC3	15995	chr9:139890209:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	PPP6C->chr9:127908852-127952218:-,protein_phosphatase_6_catalytic_subunit,CLIC3->chloride_intracellular_channel_3,chr9:139889087-139891255:-	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000913
ESS1_ENDOMETRIUM	UBE2E1--TOP2B	2	0	UBE2E1	6001	chr3:23853001:+	TOP2B	16576	chr3:25686946:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,TOP2B->Oncogene{Bushman},chr3:25639475-25706398:-,topoisomerase_(DNA)_II_beta	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000913
ESS1_ENDOMETRIUM	ZMYM2--CCNB1IP1	2	0	ZMYM2	9882	chr13:20593758:+	CCNB1IP1	52688	chr14:20781960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ZMYM2->Oncogene{Bushman},chr13:20532810-20665968:+,zinc_finger_MYM-type_containing_2,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	ESS1_ENDOMETRIUM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000913
ESS1_ENDOMETRIUM	AFG3L2--RNPC3	1	1	AFG3L2	11646	chr18:12351305:-	RNPC3	40746	chr1:104097656:+	ONLY_REF_SPLICE	YES	180	14	0.01	0.12	0.0117	0.0117	GTEx_v2:{count=3;pct=0.03%;dist=Ovary=1,Kidney_-_Cortex=1,Muscle_-_Skeletal=1},AFG3L2->AFG3_like_matrix_AAA_peptidase_subunit_2,chr18:12328943-12377313:-,RNPC3->RNA_binding_region_(RNP1,_RRM)_containing_3,chr1:104068313-104097861:+	ESS1_ENDOMETRIUM	0.01	0.12	0.0234	FALSE	0	1	0	1	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	FNBP4--NUP160	1	1	FNBP4	2468	chr11:47786822:-	NUP160	29772	chr11:47859175:-	ONLY_REF_SPLICE	YES	52	102	0.04	0.02	0.0117	0.0117	LOCAL_REARRANGEMENT:-:[10644],FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,NUP160->chr11:47799639-47870107:-,nucleoporin_160kDa	ESS1_ENDOMETRIUM	0.02	0.04	0.0234	TRUE	0	0	0	6	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	IL18--RAB6A	1	1	IL18	1212	chr11:112034629:-	RAB6A	21669	chr11:73390765:-	ONLY_REF_SPLICE	YES	206	270	0.01	0.01	0.0117	0.0117	IL18->chr11:112013974-112034840:-,interleukin_18,RAB6A->RAB6A,_member_RAS_oncogene_family,chr11:73386683-73472182:-	ESS1_ENDOMETRIUM	0.01	0.01	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000913
ESS1_ENDOMETRIUM	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	2131	69	0	0.03	0.0117	0.0117	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	ESS1_ENDOMETRIUM	0	0.03	0.0234	FALSE	6	50	7	115	0	FALSE	ACH-000913
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	172	14	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	1.6488	0.1342	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.99	1	1.783	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	153	21	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4667	0.2013	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	1.668	FALSE	462	80	0	856	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	100	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9586	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.9586	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	80	19	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.7669	0.1821	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.99	1	0.949	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	69	35	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	10	0	0.91	1	0.6614	0.3355	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.91	1	0.9969	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	CAMSAP2--DDX59	54	31	CAMSAP2	4915	chr1:200784772:+	DDX59	35617	chr1:200613645:-	ONLY_REF_SPLICE	YES	7	17	0.92	0.83	0.5176	0.2972	LOCAL_INVERSION:+:-:[69589],CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+,DDX59->DEAD-box_helicase_59,chr1:200593024-200639097:-	BICR6_UPPER_AERODIGESTIVE_TRACT	0.83	0.92	0.8148	TRUE	0	0	0	1	0	TRUE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	24	134	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2301	1.2845	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	1.5146	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	37	67	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3547	0.6423	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.997	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	47	21	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4505	0.2013	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.6518	FALSE	462	80	0	856	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	47	9	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4505	0.0863	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.5368	TRUE	508	994	45	981	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	36	51	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.3451	0.4889	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.98	1	0.834	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	28	69	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	11	0	0.9	1	0.2684	0.6614	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.9	1	0.9298	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	21	95	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2013	0.9107	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	1.112	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	163	MT-TA	1059	chrM:5597:-	MT-TN	4015	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	1.5625	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	1.5913	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	41	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.393	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.393	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	27	42	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2588	0.4026	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.6614	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	CAMSAP2--DDX59	34	9	CAMSAP2	4915	chr1:200784772:+	DDX59	38542	chr1:200594175:-	ONLY_REF_SPLICE	YES	7	0	0.86	1	0.3259	0.0863	LOCAL_INVERSION:+:-:[69589],CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+,DDX59->DEAD-box_helicase_59,chr1:200593024-200639097:-	BICR6_UPPER_AERODIGESTIVE_TRACT	0.86	1	0.4122	TRUE	0	0	0	1	0	TRUE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	24	48	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2301	0.4601	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.6902	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	33	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3163	0.0096	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.3259	FALSE	462	80	0	856	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	120	MT-TA	1054	chrM:5602:-	MT-TN	3986	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0288	1.1503	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	1.1791	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	99	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0.949	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	1.0065	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	30	1	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	463	17	0.06	0.65	0.2876	0.0096	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR6_UPPER_AERODIGESTIVE_TRACT	0.06	0.65	0.2972	FALSE	351	233	23	137	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	94	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	4	0	0.96	1	0.0479	0.9011	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.949	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	9	69	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	11	0	0.88	1	0.0863	0.6614	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.7477	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	26	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	33	1	0.45	0.96	0.2492	0.0096	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BICR6_UPPER_AERODIGESTIVE_TRACT	0.45	0.96	0.2588	TRUE	519	3926	326	965	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	5	71	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0.6806	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.7285	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	69	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	6	0	0.92	1	0.0383	0.6614	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.92	1	0.6997	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	11	37	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	10	0	0.83	1	0.1054	0.3547	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.83	1	0.4601	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	69	MT-TA	1051	chrM:5605:-	MT-TN	4091	chrM:5708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	0.6614	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.6902	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	13	26	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1246	0.2492	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.3738	FALSE	462	80	0	856	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	JUP--MT-CO3	16	3	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	448	26425	0.04	0	0.1534	0.0288	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BICR6_UPPER_AERODIGESTIVE_TRACT	0	0.04	0.1822	FALSE	0	0	0	33	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	45	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.0479	0.4314	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.89	1	0.4793	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	44	MT-ND6	1199	chrM:14475:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	11	0	0.81	1	0.0383	0.4218	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.81	1	0.4601	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	15	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1438	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.1438	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	14	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1342	0.0096	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.1438	FALSE	416	2512	207	587	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	14	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1342	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.1342	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	12	7	MT-ND3	1213	chrM:10271:+	MT-ATP8	4379	chrM:8398:+	INCL_NON_REF_SPLICE	YES	2046	0	0.01	1	0.115	0.0671	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR6_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.1821	FALSE	351	233	23	137	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	42	MT-ND6	1126	chrM:14548:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	7	0	0.87	1	0.0288	0.4026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.87	1	0.4314	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	37	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.0383	0.3547	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.91	1	0.393	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	41	MT-ND6	1260	chrM:14414:-	MT-TE	4567	chrM:14701:-	INCL_NON_REF_SPLICE	YES	7	0	0.86	1	0.0288	0.393	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.86	1	0.4218	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	13	1	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1246	0.0096	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.1342	FALSE	13	214	14	42	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	JUP--MT-CO3	11	7	JUP	13194	chr17:39914029:-	MT-CO3	23810	chrM:9256:+	INCL_NON_REF_SPLICE	NO	384	0	0.04	1	0.1054	0.0671	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BICR6_UPPER_AERODIGESTIVE_TRACT	0.04	1	0.1725	FALSE	0	0	0	1	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	7	23	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0.2205	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.2876	FALSE	462	80	0	856	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	12	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.115	0.0096	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.1246	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	12	1	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.115	0.0096	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.1246	FALSE	13	214	14	42	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	11	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1054	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.1054	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	24	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0479	0.2301	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.91	1	0.278	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	10	1	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	YES	268	0	0.04	1	0.0959	0.0096	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR6_UPPER_AERODIGESTIVE_TRACT	0.04	1	0.1055	FALSE	351	233	23	137	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	17	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.0575	0.163	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.85	1	0.2205	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	10	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0959	0.0096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.92	1	0.1055	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	24	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0.2301	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.2684	FALSE	462	80	0	856	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TL2--MT-TS2	3	28	MT-TL2	1070	chrM:12335:+	MT-TS2	4071	chrM:12206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	0.2684	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1],MT-TL2->chrM:12266-12336:+,mitochondrially_encoded_tRNA_leucine_2_(CUN),MT-TS2->chrM:12207-12265:+,mitochondrially_encoded_tRNA_serine_2_(AGU/C)	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.2972	FALSE	0	0	0	2	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	JUP--MT-CO3	8	7	JUP	11002	chr17:39919333:-	MT-CO3	24117	chrM:9563:+	INCL_NON_REF_SPLICE	NO	458	26282	0.03	0	0.0767	0.0671	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BICR6_UPPER_AERODIGESTIVE_TRACT	0	0.03	0.1438	FALSE	0	0	0	1	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	9	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0863	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0863	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0863	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0863	TRUE	0	0	0	434	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	CAMSAP2--DDX59	1	31	CAMSAP2	5948	chr1:200797733:+	DDX59	35617	chr1:200613645:-	ONLY_REF_SPLICE	YES	10	17	0.76	0.65	0.0096	0.2972	LOCAL_INVERSION:+:-:[69589],CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+,DDX59->DEAD-box_helicase_59,chr1:200593024-200639097:-	BICR6_UPPER_AERODIGESTIVE_TRACT	0.65	0.76	0.3068	TRUE	0	0	0	1	0	TRUE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	5	15	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0.1438	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.1917	FALSE	462	80	0	856	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	CTD-2020K17.4--LRRC37A2	8	2	CTD-2020K17.4	2136	chr17:43325068:-	LRRC37A2	21307	chr17:44627781:+	ONLY_REF_SPLICE	YES	2	9	0.83	0.53	0.0767	0.0192	CTD-2020K17.4->chr17:43322553-43326203:-,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	BICR6_UPPER_AERODIGESTIVE_TRACT	0.53	0.83	0.0959	TRUE	0	0	0	1	0	TRUE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	5	13	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0.1246	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.1725	FALSE	462	80	0	856	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	21	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	0.2013	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.2301	FALSE	462	80	0	856	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	20	MT-ND6	1111	chrM:14563:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0288	0.1917	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.92	1	0.2205	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	20	MT-TA	1072	chrM:5584:-	MT-TN	4113	chrM:5686:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	0.1917	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.2205	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	SPG11--MRPL52	8	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0767	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0767	TRUE	38	11	0	19	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	SLC16A12--LIPA	7	3	SLC16A12	5062	chr10:91222136:-	LIPA	22973	chr10:91074416:-	ONLY_REF_SPLICE	YES	25	0	0.29	1	0.0671	0.0288	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	BICR6_UPPER_AERODIGESTIVE_TRACT	0.29	1	0.0959	FALSE	1	78	7	7	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	7	2	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0.0192	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0863	FALSE	13	214	14	42	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	7	1	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0.0096	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0767	FALSE	13	214	14	42	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	SHROOM2--WWC3	7	1	SHROOM2	1255	chrX:9754750:+	WWC3	24650	chrX:10031485:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0.0096	NEIGHBORS[66119],SHROOM2->chrX:9754496-9917483:+,shroom_family_member_2,WWC3->WWC_family_member_3,chrX:9983602-10112518:+	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0767	FALSE	0	0	0	1	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	6	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0575	0.0288	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0863	FALSE	292	1546	117	613	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	6	1	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0.0096	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0671	FALSE	13	214	14	42	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0575	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	1	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0479	0.0096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	0.86	1	0.0575	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0479	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	JUP--MT-CO3	3	7	JUP	19508	chr17:39776944:-	MT-CO3	23971	chrM:9417:+	INCL_NON_REF_SPLICE	YES	2468	18810	0	0	0.0288	0.0671	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BICR6_UPPER_AERODIGESTIVE_TRACT	0	0	0.0959	FALSE	0	0	0	1	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	3	7	MT-ND3	1216	chrM:10274:+	MT-ATP8	4384	chrM:8403:+	INCL_NON_REF_SPLICE	YES	1922	0	0.01	1	0.0288	0.0671	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR6_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.0959	FALSE	351	233	23	137	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	3	5	MT-ND3	1270	chrM:10328:+	MT-ATP8	4454	chrM:8473:+	INCL_NON_REF_SPLICE	YES	2	166	0.8	0.05	0.0288	0.0479	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR6_UPPER_AERODIGESTIVE_TRACT	0.05	0.8	0.0767	FALSE	351	233	23	137	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0383	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	4	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0383	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0383	TRUE	22	156	2	142	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0288	0.0288	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BICR6_UPPER_AERODIGESTIVE_TRACT	0.86	0.86	0.0576	FALSE	515	4851	409	746	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	3	2	MT-TA	1061	chrM:5595:-	MT-TY	4031	chrM:5930:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	0.0192	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.048	FALSE	13	214	14	42	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	3	1	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	475	16	0.01	0.2	0.0288	0.0096	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR6_UPPER_AERODIGESTIVE_TRACT	0.01	0.2	0.0384	FALSE	351	233	23	137	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1014	chrM:14660:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0288	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0288	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1031	chrM:14643:-	MT-TE	4590	chrM:14678:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0288	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4584	chrM:14684:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0288	FALSE	499	1288	110	792	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0288	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0288	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	0	MT-TA	1020	chrM:5636:-	MT-TN	4113	chrM:5686:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0288	FALSE	369	2501	205	193	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.0192	0.0383	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BICR6_UPPER_AERODIGESTIVE_TRACT	0.46	1	0.0575	FALSE	164	806	69	479	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	CTD-2020K17.4--LRRC37A2	2	2	CTD-2020K17.4	1962	chr17:43325242:-	LRRC37A2	21307	chr17:44627781:+	ONLY_REF_SPLICE	YES	2	9	0.67	0.31	0.0192	0.0192	CTD-2020K17.4->chr17:43322553-43326203:-,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	BICR6_UPPER_AERODIGESTIVE_TRACT	0.31	0.67	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	CDH13--RP11-22H5.2	2	0	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0192	FALSE	14	31	0	36	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	1	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0096	0.0383	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BICR6_UPPER_AERODIGESTIVE_TRACT	0.71	1	0.0479	FALSE	125	705	46	456	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	RBFOX2--NDUFV2	2	0	RBFOX2	8136	chr22:36205827:-	NDUFV2	35413	chr18:9117836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	RBFOX2->RNA_binding_protein,_fox-1_homolog_2,chr22:36134783-36424473:-,NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+	BICR6_UPPER_AERODIGESTIVE_TRACT	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	1	1	0.8	0.0096	0.0288	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BICR6_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.0384	FALSE	467	2173	244	435	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	SLC16A12--LIPA	1	3	SLC16A12	5062	chr10:91222136:-	LIPA	18335	chr10:91172679:-	ONLY_REF_SPLICE	YES	25	0	0.14	1	0.0096	0.0288	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	BICR6_UPPER_AERODIGESTIVE_TRACT	0.14	1	0.0384	FALSE	0	24	3	7	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	SLC16A12--LIPA	1	3	SLC16A12	10150	chr10:91195817:-	LIPA	29664	chr10:91007406:-	ONLY_REF_SPLICE	YES	29	46	0.12	0.08	0.0096	0.0288	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	BICR6_UPPER_AERODIGESTIVE_TRACT	0.08	0.12	0.0384	FALSE	0	1	1	1	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	SLC16A12--LIPA	1	3	SLC16A12	5062	chr10:91222136:-	LIPA	21774	chr10:91095291:-	ONLY_REF_SPLICE	YES	25	0	0.14	1	0.0096	0.0288	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	BICR6_UPPER_AERODIGESTIVE_TRACT	0.14	1	0.0384	FALSE	0	2	0	2	0	FALSE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	CTD-2020K17.4--LRRC37A2	1	2	CTD-2020K17.4	2452	chr17:43324752:-	LRRC37A2	21307	chr17:44627781:+	ONLY_REF_SPLICE	YES	1	9	0.75	0.25	0.0096	0.0192	CTD-2020K17.4->chr17:43322553-43326203:-,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	BICR6_UPPER_AERODIGESTIVE_TRACT	0.25	0.75	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000415
BICR6_UPPER_AERODIGESTIVE_TRACT	SMAD3--B2M	1	1	SMAD3	2698	chr15:67358698:+	B2M	29843	chr15:45007621:+	ONLY_REF_SPLICE	YES	28	134	0.07	0.01	0.0096	0.0096	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},SMAD3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_3,chr15:67356101-67487533:+,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	BICR6_UPPER_AERODIGESTIVE_TRACT	0.01	0.07	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000415
RH30_SOFT_TISSUE	MARS--AVIL	1130	254	MARS	9632	chr12:57894305:+	AVIL	23146	chr12:58208009:-	ONLY_REF_SPLICE	YES	1549	2	0.47	1	10.5256	2.3659	{Klijn_CCL:Sarcomatoid=1},MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase,AVIL->advillin,chr12:58191159-58212487:-	RH30_SOFT_TISSUE	0.47	1	12.8915	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	AP000320.7--NPIPB1P	373	178	AP000320.7	1154	chr21:35446045:+	NPIPB1P	12133	chr18:11625982:-	ONLY_REF_SPLICE	YES	105	0	0.84	1	3.4744	1.658	AP000320.7->chr21:35445892-35732332:+,NPIPB1P->chr18:11619508-11639698:-,nuclear_pore_complex_interacting_protein_family_member_B1,_pseudogene	RH30_SOFT_TISSUE	0.84	1	5.1324	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	AVIL--LRP1	248	9	AVIL	11233	chr12:58199648:-	LRP1	79203	chr12:57607010:+	INCL_NON_REF_SPLICE	YES	4	19	0.98	0.93	2.31	0.0838	AVIL->advillin,chr12:58191159-58212487:-,LRP1->LDL_receptor_related_protein_1,chr12:57522276-57607134:+	RH30_SOFT_TISSUE	0.93	0.98	2.3938	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MET--CAV2	114	28	MET	1188	chr7:116312631:+	CAV2	30997	chr7:115928101:+	ONLY_REF_SPLICE	YES	90	0	0.61	1	1.0619	0.2608	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV2->caveolin_2,chr7:115927434-116148595:+	RH30_SOFT_TISSUE	0.61	1	1.3227	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	TIMM23B--LINC00843	96	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8942	0.2422	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RH30_SOFT_TISSUE	1	1	1.1364	TRUE	508	994	45	981	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	INVS--HSD17B3	72	36	INVS	4008	chr9:102866909:+	HSD17B3	33150	chr9:99015192:-	ONLY_REF_SPLICE	YES	36	0	0.75	1	0.6707	0.3353	INVS->chr9:102861538-103063282:+,inversin,HSD17B3->chr9:98997588-99064434:-,hydroxysteroid_(17-beta)_dehydrogenase_3	RH30_SOFT_TISSUE	0.75	1	1.006	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--VMP1	63	11	SEPT9	8751	chr17:75316430:+	VMP1	58676	chr17:57895073:+	ONLY_REF_SPLICE	YES	47	82	0.61	0.47	0.5868	0.1025	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	RH30_SOFT_TISSUE	0.47	0.61	0.6893	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	PAX3--FOXO1	57	33	PAX3	9270	chr2:223084859:-	FOXO1	18665	chr13:41134997:-	ONLY_REF_SPLICE	YES	5	0	0.95	1	0.5309	0.3074	Cosmic{samples=1159,mutations=380,papers=68},Mitelman{SA_rhabd_alv=2},chimerdb_omim:{alveolarrhabdomyosarcomas},chimerdb_omim:{alveolarrhabdomyosarcoma},chimerdb_omim:{pediatricalveolarrhabdomyosarcoma},chimerdb_pubmed{pediatric cancer alveolar rhabdomyosarcoma,pediatric solid tumor alveolar rhabdomyosarcoma,Rhabdomyosarcomas,rhabdomyosarcoma tumours,Alveolar rhabdomyosarcomas,Rhabdomyosarcoma, alveolar,malignant tumors,Adult cutaneous alveolar rhabdomyosarcoma,alveolar rhabdomyosarcoma (aRMS),alveolar rhabdomyosarcomas (RMS),musclederived tumor alveolar rhabdomyosarcoma,Rhabdomyosarcoma,alveolar rhabdomyosarcomas (ARMSs),alveolar rhabdomyosarcoma,Rhabdomyosarcomas (RMS),alveolar rhabdomyosarcoma tumors (ARMS),Alveolar rhabdomyosarcoma (RMS),alveolar rhabdomyosarcoma (RMS),alveolar Rhabdomyosarcoma (ARMS),alveolar Rhabdomyosarcoma (aRMS),Alveolar rhabdomyosarcoma (ARMS),alveolar rhabdomyosarcoma (ARMS),Embryonal Rhabdomyosarcoma (eRMS),Alveolar rhabdomyosarcoma (aRMS),rhabdomyosarcoma(RMS),rhabdomyosarcoma,human rhabdomyosarcoma,sarcoma,alveolar rhabdomyosarcom,Alveolar rhabdomyosarcoma},{Klijn_CCL:Sarcomatoid=1},PAX3->Oncogene{Bushman},chr2:223064607-223163715:-,paired_box_3,FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1	RH30_SOFT_TISSUE	0.95	1	0.8383	TRUE	0	0	0	2	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	PEMT--IFT20	55	17	PEMT	3889	chr17:17480234:-	IFT20	18603	chr17:26659013:-	ONLY_REF_SPLICE	YES	279	94	0.21	0.43	0.5123	0.1583	PEMT->chr17:17408877-17495022:-,phosphatidylethanolamine_N-methyltransferase,IFT20->chr17:26655352-26662515:-,intraflagellar_transport_20	RH30_SOFT_TISSUE	0.21	0.43	0.6706	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	TIMM23--RP11-464F9.1	58	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	294	0	0.17	1	0.5403	0.0093	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RH30_SOFT_TISSUE	0.17	1	0.5496	TRUE	519	3926	326	965	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	XRCC2--C8orf76	56	4	XRCC2	1125	chr7:152373126:-	C8orf76	15064	chr8:124250181:-	ONLY_REF_SPLICE	YES	2	70	0.97	0.46	0.5216	0.0373	XRCC2->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_2,chr7:152341864-152373250:-,C8orf76->chr8:124232196-124253638:-,chromosome_8_open_reading_frame_76	RH30_SOFT_TISSUE	0.46	0.97	0.5589	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	AVIL--LRP1	48	26	AVIL	11227	chr12:58199654:-	LRP1	79197	chr12:57607004:+	INCL_NON_REF_SPLICE	YES	4	20	0.95	0.79	0.4471	0.2422	AVIL->advillin,chr12:58191159-58212487:-,LRP1->LDL_receptor_related_protein_1,chr12:57522276-57607134:+	RH30_SOFT_TISSUE	0.79	0.95	0.6893	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	USP32--PTRH2	47	19	USP32	4918	chr17:58422842:-	PTRH2	50711	chr17:57775339:-	ONLY_REF_SPLICE	YES	67	9	0.5	0.88	0.4378	0.177	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2	RH30_SOFT_TISSUE	0.5	0.88	0.6148	TRUE	0	0	0	2	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MAD1L1--MROH3P	40	26	MAD1L1	12207	chr7:2252847:-	MROH3P	52490	chr1:200926427:+	INCL_NON_REF_SPLICE	YES	51	0	0.56	1	0.3726	0.2422	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,MROH3P->chr1:200890122-200935658:+,maestro_heat_like_repeat_family_member_3,_pseudogene	RH30_SOFT_TISSUE	0.56	1	0.6148	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--RP11-491H19.1	36	8	SEPT9	8751	chr17:75316430:+	RP11-491H19.1	48353	chr10:63554223:-	ONLY_REF_SPLICE	YES	47	0	0.48	1	0.3353	0.0745	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-491H19.1->chr10:63541503-63581004:-	RH30_SOFT_TISSUE	0.48	1	0.4098	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	AGAP2--METTL21B	27	9	AGAP2	13033	chr12:58120285:-	METTL21B	22198	chr12:58175121:+	INCL_NON_REF_SPLICE	YES	334	88	0.1	0.29	0.2515	0.0838	LOCAL_INVERSION:-:+:[29335],AGAP2->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_2,Oncogene{Bushman},chr12:58118980-58135940:-,METTL21B->chr12:58165275-58176324:+,methyltransferase_like_21B	RH30_SOFT_TISSUE	0.1	0.29	0.3353	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	GATAD2B--NUP210L	28	4	GATAD2B	1243	chr1:153895209:-	NUP210L	57418	chr1:153967656:-	ONLY_REF_SPLICE	YES	11	0	0.74	1	0.2608	0.0373	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	RH30_SOFT_TISSUE	0.74	1	0.2981	TRUE	0	1	0	1	1	TRUE	ACH-000833
RH30_SOFT_TISSUE	ZNF654--HMGB2	29	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2701	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RH30_SOFT_TISSUE	1	1	0.2701	TRUE	0	0	0	518	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	INVS--HSD17B3	16	40	INVS	4008	chr9:102866909:+	HSD17B3	32074	chr9:99017225:-	ONLY_REF_SPLICE	YES	36	0	0.61	1	0.149	0.3726	INVS->chr9:102861538-103063282:+,inversin,HSD17B3->chr9:98997588-99064434:-,hydroxysteroid_(17-beta)_dehydrogenase_3	RH30_SOFT_TISSUE	0.61	1	0.5216	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	CDK4--MT-ND2	24	6	CDK4	3361	chr12:58145026:-	MT-ND2	10239	chrM:4831:+	INCL_NON_REF_SPLICE	YES	10024	8864	0	0	0.2236	0.0559	CDK4->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:58141510-58149796:-,cyclin-dependent_kinase_4,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	RH30_SOFT_TISSUE	0	0	0.2795	FALSE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--VMP1	21	9	SEPT9	6917	chr17:75303279:+	VMP1	58676	chr17:57895073:+	ONLY_REF_SPLICE	YES	22	82	0.58	0.27	0.1956	0.0838	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	RH30_SOFT_TISSUE	0.27	0.58	0.2794	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SPG11--MRPL52	23	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2142	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	RH30_SOFT_TISSUE	1	1	0.2142	TRUE	38	11	0	19	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	RP11-680G10.1--GSE1	14	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.91	0.1304	0.0652	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RH30_SOFT_TISSUE	0.91	1	0.1956	TRUE	458	1351	185	561	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	NPM1P24--SET	15	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1397	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RH30_SOFT_TISSUE	1	1	0.1397	TRUE	0	0	0	434	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	MT-ND6--MT-TE	12	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.87	1	0.1118	0.0745	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH30_SOFT_TISSUE	0.87	1	0.1863	FALSE	499	1288	110	792	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	R3HDM2--RP11-58A17.4	13	3	R3HDM2	2356	chr12:57789532:-	RP11-58A17.4	33110	chr12:58482221:+	ONLY_REF_SPLICE	YES	4	3	0.8	0.84	0.1211	0.0279	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,RP11-58A17.4->chr12:58481675-58487145:+	RH30_SOFT_TISSUE	0.8	0.84	0.149	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SRGAP2B--TNFAIP1	12	6	SRGAP2B	4458	chr1:144014093:+	TNFAIP1	11640	chr17:26666434:+	ONLY_REF_SPLICE	YES	85	40	0.17	0.31	0.1118	0.0559	SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+,TNFAIP1->Oncogene{Bushman},TNF_alpha_induced_protein_1,chr17:26662628-26674035:+	RH30_SOFT_TISSUE	0.17	0.31	0.1677	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	TSPAN31--CAPN2	13	0	TSPAN31	8021	chr12:58142200:+	CAPN2	24613	chr1:223943218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1211	0	TSPAN31->chr12:58131796-58143994:+,tetraspanin_31,CAPN2->calpain_2,chr1:223889295-223963720:+	RH30_SOFT_TISSUE	1	1	0.1211	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--RP11-491H19.1	10	6	SEPT9	6917	chr17:75303279:+	RP11-491H19.1	48353	chr10:63554223:-	ONLY_REF_SPLICE	YES	22	0	0.42	1	0.0931	0.0559	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-491H19.1->chr10:63541503-63581004:-	RH30_SOFT_TISSUE	0.42	1	0.149	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--VMP1	9	10	SEPT9	8206	chr17:75315885:+	VMP1	58676	chr17:57895073:+	ONLY_REF_SPLICE	YES	135	82	0.12	0.19	0.0838	0.0931	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	RH30_SOFT_TISSUE	0.12	0.19	0.1769	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--RP11-491H19.1	9	7	SEPT9	8206	chr17:75315885:+	RP11-491H19.1	48353	chr10:63554223:-	ONLY_REF_SPLICE	YES	135	0	0.11	1	0.0838	0.0652	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-491H19.1->chr10:63541503-63581004:-	RH30_SOFT_TISSUE	0.11	1	0.149	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	EEF2--NRXN2	10	1	EEF2	6638	chr19:3979830:-	NRXN2	33212	chr11:64416337:-	INCL_NON_REF_SPLICE	NO	2689	31	0	0.26	0.0931	0.0093	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:2=pct:0.3]},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,NRXN2->Oncogene{Bushman},chr11:64373646-64490660:-,neurexin_2	RH30_SOFT_TISSUE	0	0.26	0.1024	FALSE	2	4	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	PEMT--IFT20	5	18	PEMT	3889	chr17:17480234:-	IFT20	18208	chr17:26659408:-	ONLY_REF_SPLICE	YES	279	113	0.08	0.17	0.0466	0.1677	PEMT->chr17:17408877-17495022:-,phosphatidylethanolamine_N-methyltransferase,IFT20->chr17:26655352-26662515:-,intraflagellar_transport_20	RH30_SOFT_TISSUE	0.08	0.17	0.2143	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MT-ND6--MT-TE	8	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0745	0.0466	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH30_SOFT_TISSUE	1	1	0.1211	FALSE	499	1288	110	792	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	USP32--PTRH2	9	0	USP32	4918	chr17:58422842:-	PTRH2	53562	chr17:57752182:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0838	0	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2	RH30_SOFT_TISSUE	1	1	0.0838	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MT-CO3--MT-ATP6	3	22	MT-CO3	1220	chrM:9426:+	MT-ATP6	5072	chrM:8814:+	INCL_NON_REF_SPLICE	YES	2	25	0.93	0.5	0.0279	0.2049	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RH30_SOFT_TISSUE	0.5	0.93	0.2328	FALSE	189	492	56	216	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	MT-ND6--MT-TE	4	16	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0373	0.149	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH30_SOFT_TISSUE	0.95	1	0.1863	FALSE	499	1288	110	792	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	OSBPL1A--AC074363.1	8	0	OSBPL1A	26247	chr18:21805006:-	AC074363.1	43347	chr2:168346687:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0745	0	OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A,AC074363.1->chr2:168149681-168414843:+	RH30_SOFT_TISSUE	1	1	0.0745	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	REV3L--RPL28	8	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0745	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	RH30_SOFT_TISSUE	1	1	0.0745	TRUE	22	156	2	142	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	RP11-344E13.3--UBBP4	7	2	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0652	0.0186	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	RH30_SOFT_TISSUE	1	1	0.0838	TRUE	23	13	0	54	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--RP11-63A2.2	7	1	SEPT9	6917	chr17:75303279:+	RP11-63A2.2	46472	chr10:63444914:-	INCL_NON_REF_SPLICE	YES	22	3	0.27	0.73	0.0652	0.0093	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-63A2.2->chr10:63444650-63445146:-	RH30_SOFT_TISSUE	0.27	0.73	0.0745	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--RP11-63A2.2	5	9	SEPT9	8751	chr17:75316430:+	RP11-63A2.2	46219	chr10:63445167:-	INCL_NON_REF_SPLICE	YES	47	0	0.23	1	0.0466	0.0838	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-63A2.2->chr10:63444650-63445146:-	RH30_SOFT_TISSUE	0.23	1	0.1304	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MACROD2--GINS1	7	0	MACROD2	21052	chr20:15210707:+	GINS1	48493	chr20:25422338:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0652	0	MACROD2->MACRO_domain_containing_2,chr20:13976015-16033842:+,GINS1->GINS_complex_subunit_1,chr20:25388363-25433264:+	RH30_SOFT_TISSUE	1	1	0.0652	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	ACACA--MED1	6	3	ACACA	72111	chr17:35453931:-	MED1	86616	chr17:37590573:-	ONLY_REF_SPLICE	YES	93	38	0.09	0.19	0.0559	0.0279	ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1	RH30_SOFT_TISSUE	0.09	0.19	0.0838	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	GATAD2B--NUP210L	6	3	GATAD2B	1243	chr1:153895209:-	NUP210L	58523	chr1:153965565:-	ONLY_REF_SPLICE	YES	11	8	0.45	0.53	0.0559	0.0279	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	RH30_SOFT_TISSUE	0.45	0.53	0.0838	TRUE	0	1	0	1	1	TRUE	ACH-000833
RH30_SOFT_TISSUE	INVS--HSD17B3	3	14	INVS	4008	chr9:102866909:+	HSD17B3	34258	chr9:99013767:-	ONLY_REF_SPLICE	YES	36	3	0.32	0.85	0.0279	0.1304	INVS->chr9:102861538-103063282:+,inversin,HSD17B3->chr9:98997588-99064434:-,hydroxysteroid_(17-beta)_dehydrogenase_3	RH30_SOFT_TISSUE	0.32	0.85	0.1583	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MARS--AVIL	1	22	MARS	9632	chr12:57894305:+	AVIL	25146	chr12:58204910:-	ONLY_REF_SPLICE	YES	1549	231	0.01	0.09	0.0093	0.2049	{Klijn_CCL:Sarcomatoid=1},MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase,AVIL->advillin,chr12:58191159-58212487:-	RH30_SOFT_TISSUE	0.01	0.09	0.2142	TRUE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	XRCC2--C8orf76	6	2	XRCC2	1125	chr7:152373126:-	C8orf76	16208	chr8:124243997:-	ONLY_REF_SPLICE	YES	2	40	0.8	0.17	0.0559	0.0186	XRCC2->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_2,chr7:152341864-152373250:-,C8orf76->chr8:124232196-124253638:-,chromosome_8_open_reading_frame_76	RH30_SOFT_TISSUE	0.17	0.8	0.0745	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	5	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0.0466	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RH30_SOFT_TISSUE	1	1	0.0932	FALSE	515	4851	409	746	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	FOXO1--PAX3	6	0	FOXO1	2015	chr13:41239720:-	PAX3	21556	chr2:223066909:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0559	0	chimerdb_omim:{alveolarrhabdomyosarcomas},chimerdb_omim:{alveolarrhabdomyosarcoma},chimerdb_omim:{pediatricalveolarrhabdomyosarcoma},{Klijn_CCL:Sarcomatoid=1},FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,PAX3->Oncogene{Bushman},chr2:223064607-223163715:-,paired_box_3	RH30_SOFT_TISSUE	1	1	0.0559	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MT-ND6--MT-TE	4	8	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0.0745	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH30_SOFT_TISSUE	1	1	0.1118	FALSE	499	1288	110	792	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	NPM1P24--SET	6	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0559	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RH30_SOFT_TISSUE	1	1	0.0559	TRUE	0	0	0	434	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	USP32--PTRH2	1	20	USP32	4918	chr17:58422842:-	PTRH2	48500	chr17:57777550:-	ONLY_REF_SPLICE	YES	67	2	0.24	0.91	0.0093	0.1863	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2	RH30_SOFT_TISSUE	0.24	0.91	0.1956	TRUE	0	0	0	2	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--RP11-63A2.2	4	7	SEPT9	8751	chr17:75316430:+	RP11-63A2.2	46472	chr10:63444914:-	INCL_NON_REF_SPLICE	YES	47	3	0.19	0.79	0.0373	0.0652	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-63A2.2->chr10:63444650-63445146:-	RH30_SOFT_TISSUE	0.19	0.79	0.1025	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MT-ND6--MT-TE	4	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0.0559	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH30_SOFT_TISSUE	1	1	0.0932	FALSE	499	1288	110	792	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	C15orf57--CBX3	5	1	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	42	13	0.12	0.32	0.0466	0.0093	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RH30_SOFT_TISSUE	0.12	0.32	0.0559	TRUE	267	562	48	632	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	INVS--HSD17B3	4	5	INVS	4008	chr9:102866909:+	HSD17B3	38028	chr9:99007708:-	ONLY_REF_SPLICE	YES	36	22	0.2	0.29	0.0373	0.0466	INVS->chr9:102861538-103063282:+,inversin,HSD17B3->chr9:98997588-99064434:-,hydroxysteroid_(17-beta)_dehydrogenase_3	RH30_SOFT_TISSUE	0.2	0.29	0.0839	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	NCOR2--SCARB1	5	1	NCOR2	8260	chr12:124957498:-	SCARB1	67583	chr12:125302253:-	ONLY_REF_SPLICE	YES	112	187	0.05	0.03	0.0466	0.0093	YOSHIHARA_TCGA_num_samples[BRCA:1|LAML:1|LUAD:2],NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1	RH30_SOFT_TISSUE	0.03	0.05	0.0559	TRUE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	RPSAP52--HMGA2	5	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	2	37	0.75	0.14	0.0466	0.0093	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	RH30_SOFT_TISSUE	0.14	0.75	0.0559	FALSE	0	59	0	125	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	SAMD5--SASH1	5	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	17	2	0.26	0.75	0.0466	0.0093	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	RH30_SOFT_TISSUE	0.26	0.75	0.0559	TRUE	53	396	64	110	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	MT-CO3--MT-ATP6	5	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RH30_SOFT_TISSUE	1	1	0.0466	FALSE	189	492	56	216	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	MT-CO3--MT-ATP6	5	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RH30_SOFT_TISSUE	1	1	0.0466	FALSE	189	492	56	216	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	MET--CAV2	1	15	MET	1188	chr7:116312631:+	CAV2	32065	chr7:115929906:+	ONLY_REF_SPLICE	YES	90	0	0.15	1	0.0093	0.1397	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV2->caveolin_2,chr7:115927434-116148595:+	RH30_SOFT_TISSUE	0.15	1	0.149	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	RP11-141M1.3--STARD13	4	2	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	31	1	0.16	0.0373	0.0186	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	RH30_SOFT_TISSUE	0.16	1	0.0559	FALSE	49	120	16	70	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	11	1	0.31	0.0373	0.0093	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RH30_SOFT_TISSUE	0.31	1	0.0466	TRUE	465	1949	224	605	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--RP11-491H19.1	3	5	SEPT9	4441	chr17:75284292:+	RP11-491H19.1	48353	chr10:63554223:-	ONLY_REF_SPLICE	YES	38	0	0.17	1	0.0279	0.0466	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-491H19.1->chr10:63541503-63581004:-	RH30_SOFT_TISSUE	0.17	1	0.0745	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--VMP1	1	13	SEPT9	10953	chr17:75319893:+	VMP1	58676	chr17:57895073:+	ONLY_REF_SPLICE	YES	58	82	0.19	0.15	0.0093	0.1211	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	RH30_SOFT_TISSUE	0.15	0.19	0.1304	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	TBC1D22A--MACROD2	4	1	TBC1D22A	14474	chr22:47308084:+	MACROD2	46124	chr20:15210586:+	ONLY_REF_SPLICE	YES	72	0	0.06	1	0.0373	0.0093	TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,MACROD2->MACRO_domain_containing_2,chr20:13976015-16033842:+	RH30_SOFT_TISSUE	0.06	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RH30_SOFT_TISSUE	1	1	0.0373	FALSE	231	217	16	283	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RH30_SOFT_TISSUE	1	1	0.0373	FALSE	292	1546	117	613	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	PEMT--IFT20	3	4	PEMT	3889	chr17:17480234:-	IFT20	20062	chr17:26657554:-	ONLY_REF_SPLICE	YES	279	70	0.02	0.09	0.0279	0.0373	PEMT->chr17:17408877-17495022:-,phosphatidylethanolamine_N-methyltransferase,IFT20->chr17:26655352-26662515:-,intraflagellar_transport_20	RH30_SOFT_TISSUE	0.02	0.09	0.0652	TRUE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	XRCC2--C8orf76	4	0	XRCC2	1125	chr7:152373126:-	C8orf76	17666	chr8:124238872:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	XRCC2->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_2,chr7:152341864-152373250:-,C8orf76->chr8:124232196-124253638:-,chromosome_8_open_reading_frame_76	RH30_SOFT_TISSUE	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	NCOR2--UBC	3	1	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	5	47	0.44	0.08	0.0279	0.0093	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	RH30_SOFT_TISSUE	0.08	0.44	0.0372	TRUE	145	312	16	51	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	TBC1D22A--SLCO3A1	2	5	TBC1D22A	13359	chr22:47290742:+	SLCO3A1	30273	chr15:92459223:+	ONLY_REF_SPLICE	YES	56	21	0.11	0.25	0.0186	0.0466	TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1	RH30_SOFT_TISSUE	0.11	0.25	0.0652	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	C15orf57--CBX3	3	0	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RH30_SOFT_TISSUE	1	1	0.0279	TRUE	267	562	48	632	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	LDLRAD3--TRIM44	3	0	LDLRAD3	1164	chr11:35965694:+	TRIM44	19552	chr11:35706807:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	YOSHIHARA_TCGA_num_samples[LUAD:1|SKCM:1],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,TRIM44->chr11:35684353-35829775:+,tripartite_motif_containing_44	RH30_SOFT_TISSUE	1	1	0.0279	TRUE	0	0	0	2	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RH30_SOFT_TISSUE	1	1	0.0279	FALSE	189	492	56	216	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RH30_SOFT_TISSUE	1	1	0.0279	FALSE	189	492	56	216	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1828	chrM:11587:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RH30_SOFT_TISSUE	1	1	0.0279	FALSE	231	217	16	283	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH30_SOFT_TISSUE	1	1	0.0279	FALSE	499	1288	110	792	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	PAX3--FOXO1	3	0	PAX3	4967	chr2:223158886:-	FOXO1	18665	chr13:41134997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	Cosmic{samples=1159,mutations=380,papers=68},Mitelman{SA_rhabd_alv=2},chimerdb_omim:{alveolarrhabdomyosarcomas},chimerdb_omim:{alveolarrhabdomyosarcoma},chimerdb_omim:{pediatricalveolarrhabdomyosarcoma},chimerdb_pubmed{pediatric cancer alveolar rhabdomyosarcoma,pediatric solid tumor alveolar rhabdomyosarcoma,Rhabdomyosarcomas,rhabdomyosarcoma tumours,Alveolar rhabdomyosarcomas,Rhabdomyosarcoma, alveolar,malignant tumors,Adult cutaneous alveolar rhabdomyosarcoma,alveolar rhabdomyosarcoma (aRMS),alveolar rhabdomyosarcomas (RMS),musclederived tumor alveolar rhabdomyosarcoma,Rhabdomyosarcoma,alveolar rhabdomyosarcomas (ARMSs),alveolar rhabdomyosarcoma,Rhabdomyosarcomas (RMS),alveolar rhabdomyosarcoma tumors (ARMS),Alveolar rhabdomyosarcoma (RMS),alveolar rhabdomyosarcoma (RMS),alveolar Rhabdomyosarcoma (ARMS),alveolar Rhabdomyosarcoma (aRMS),Alveolar rhabdomyosarcoma (ARMS),alveolar rhabdomyosarcoma (ARMS),Embryonal Rhabdomyosarcoma (eRMS),Alveolar rhabdomyosarcoma (aRMS),rhabdomyosarcoma(RMS),rhabdomyosarcoma,human rhabdomyosarcoma,sarcoma,alveolar rhabdomyosarcom,Alveolar rhabdomyosarcoma},{Klijn_CCL:Sarcomatoid=1},PAX3->Oncogene{Bushman},chr2:223064607-223163715:-,paired_box_3,FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1	RH30_SOFT_TISSUE	1	1	0.0279	TRUE	0	0	0	2	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SEPT9--RP11-491H19.1	3	0	SEPT9	8751	chr17:75316430:+	RP11-491H19.1	49468	chr10:63542163:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-491H19.1->chr10:63541503-63581004:-	RH30_SOFT_TISSUE	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	SPON2--CTBP1	3	0	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	RH30_SOFT_TISSUE	1	1	0.0279	TRUE	4	3	0	21	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	GLTSCR2--DHX34	2	2	GLTSCR2	1262	chr19:48249040:+	DHX34	29491	chr19:47885237:+	ONLY_REF_SPLICE	YES	1025	32	0	0.11	0.0186	0.0186	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:2=pct:3.8],Breast=[count:2=pct:1.8],Cervix_Uteri=[count:1=pct:12.5],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=4;pct=0.05%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hippocampus=1,Whole_Blood=1,Spleen=1},GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+	RH30_SOFT_TISSUE	0	0.11	0.0372	FALSE	14	43	2	13	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	RP11-159G9.5--CGGBP1	2	2	RP11-159G9.5	1232	chr3:88108655:+	CGGBP1	15451	chr3:88107373:-	ONLY_REF_SPLICE	YES	10	257	0.29	0.02	0.0186	0.0186	NEIGHBORS_OVERLAP:+:-:[79699],RP11-159G9.5->chr3:88108424-88188123:+,CGGBP1->CGG_triplet_repeat_binding_protein_1,chr3:88101094-88199035:-	RH30_SOFT_TISSUE	0.02	0.29	0.0372	FALSE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0186	0.0093	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RH30_SOFT_TISSUE	0.25	1	0.0279	FALSE	125	705	46	456	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0093	0.0466	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RH30_SOFT_TISSUE	1	1	0.0559	FALSE	407	2205	196	549	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	TULP4--RP11-732M18.3	2	1	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	27	2	0.1	0.6	0.0186	0.0093	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	RH30_SOFT_TISSUE	0.1	0.6	0.0279	TRUE	126	140	6	21	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	ZDHHC8--LZTR1	2	1	ZDHHC8	4031	chr22:20127415:+	LZTR1	28718	chr22:21350985:+	ONLY_REF_SPLICE	YES	151	120	0.02	0.02	0.0186	0.0093	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},ZDHHC8->chr22:20116979-20135530:+,zinc_finger_DHHC-type_containing_8,LZTR1->ArcherDX_panel,FoundationOne_panel,chr22:21333751-21353327:+,leucine-zipper-like_transcription_regulator_1	RH30_SOFT_TISSUE	0.02	0.02	0.0279	TRUE	0	5	0	2	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	BSG--C9orf3	2	0	BSG	2405	chr19:572701:+	C9orf3	50258	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	1	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	CLYBL--SFPQ	2	0	CLYBL	1093	chr13:100259011:+	SFPQ	34092	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	CLYBL->chr13:100258919-100549387:+,citrate_lyase_beta_like,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	GATAD2B--NUP210L	1	4	GATAD2B	1243	chr1:153895209:-	NUP210L	56213	chr1:153973536:-	ONLY_REF_SPLICE	NO	11	0	0.31	1	0.0093	0.0373	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	RH30_SOFT_TISSUE	0.31	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	GNA12--RNPC3	2	0	GNA12	4638	chr7:2834562:-	RNPC3	33491	chr1:104097656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	GTEx_FI:{Pituitary=[count:1=pct:1.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=6;pct=0.07%;dist=Brain_-_Putamen_(basal_ganglia)=1,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1,Colon_-_Transverse=1},GNA12->G_protein_subunit_alpha_12,Oncogene{Bushman},chr7:2767746-2883958:-,RNPC3->RNA_binding_region_(RNP1,_RRM)_containing_3,chr1:104068313-104097861:+	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	1	0	1	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	LONP1--NOTCH3	2	0	LONP1	9018	chr19:5708353:-	NOTCH3	38139	chr19:15285211:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	LONP1->chr19:5691845-5720583:-,lon_peptidase_1,_mitochondrial,NOTCH3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:15270444-15311792:-,notch_3	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	3	14	2	43	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	MED13L--FBXW8	2	0	MED13L	1279	chr12:116714865:-	FBXW8	52306	chr12:117448128:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,FBXW8->F-box_and_WD_repeat_domain_containing_8,chr12:117348761-117468953:+	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MEF2A--LRRC28	2	0	MEF2A	2764	chr15:100106309:+	LRRC28	38528	chr15:99874128:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=3;pct=0.03%;dist=Ovary=1,Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1},LOCAL_REARRANGEMENT:+:[86436],MEF2A->chr15:100017370-100256671:+,myocyte_enhancer_factor_2A,LRRC28->chr15:99791567-99930934:+,leucine_rich_repeat_containing_28	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	MINOS1--CAPZB	2	0	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	2	7	0	21	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	R3HDM2--RP11-58A17.4	2	0	R3HDM2	1286	chr12:57824503:-	RP11-58A17.4	32880	chr12:58481991:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,RP11-58A17.4->chr12:58481675-58487145:+	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	RBM10--TAF9	2	0	RBM10	2759	chrX:47006897:+	TAF9	21797	chr5:68662422:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	RBM10->ArcherDX_panel,FoundationOne_panel,RNA_binding_motif_protein_10,chrX:47004268-47046212:+,TAF9->TATA-box_binding_protein_associated_factor_9,chr5:68646811-68665840:-	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	RP11-141M1.3--STARD13	2	0	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	RH30_SOFT_TISSUE	1	1	0.0186	FALSE	141	264	50	91	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	SLC39A7--PHF1	2	0	SLC39A7	1494	chr6:33168715:+	PHF1	12290	chr6:33382502:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	SLC39A7->chr6:33168222-33172216:+,solute_carrier_family_39_member_7,PHF1->PHD_finger_protein_1,chr6:33378176-33384230:+	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	UBE2K--RPS2	2	0	UBE2K	1347	chr4:39700010:+	RPS2	16399	chr16:2013257:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	ZZZ3--PIGK	2	0	ZZZ3	1158	chr1:78148947:-	PIGK	34642	chr1:77588044:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	ZZZ3->chr1:78028101-78149104:-,zinc_finger_ZZ-type_containing_3,PIGK->chr1:77554675-77685115:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_K	RH30_SOFT_TISSUE	1	1	0.0186	TRUE	0	1	0	2	1	TRUE	ACH-000833
RH30_SOFT_TISSUE	GATAD2B--NUP210L	1	3	GATAD2B	1243	chr1:153895209:-	NUP210L	58677	chr1:153965411:-	ONLY_REF_SPLICE	NO	11	8	0.27	0.33	0.0093	0.0279	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	RH30_SOFT_TISSUE	0.27	0.33	0.0372	TRUE	0	1	0	1	1	TRUE	ACH-000833
RH30_SOFT_TISSUE	R3HDM2--RP11-58A17.4	1	3	R3HDM2	2356	chr12:57789532:-	RP11-58A17.4	32880	chr12:58481991:+	ONLY_REF_SPLICE	NO	4	2	0.5	0.67	0.0093	0.0279	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,RP11-58A17.4->chr12:58481675-58487145:+	RH30_SOFT_TISSUE	0.5	0.67	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	LDLRAD3--PRR5L	1	2	LDLRAD3	5673	chr11:36120011:+	PRR5L	30278	chr11:36415396:+	ONLY_REF_SPLICE	YES	94	1	0.03	0.75	0.0093	0.0186	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	RH30_SOFT_TISSUE	0.03	0.75	0.0279	FALSE	12	80	1	10	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	AGPS--MTX2	1	1	AGPS	20466	chr2:178388533:+	MTX2	32255	chr2:177161588:+	ONLY_REF_SPLICE	YES	104	158	0.02	0.01	0.0093	0.0093	AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+,MTX2->chr2:177134123-177202753:+,metaxin_2	RH30_SOFT_TISSUE	0.01	0.02	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	ARFGEF2--ZFAS1	1	1	ARFGEF2	1121	chr20:47538547:+	ZFAS1	48751	chr20:47905582:+	ONLY_REF_SPLICE	YES	8	169	0.2	0.01	0.0093	0.0093	ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+	RH30_SOFT_TISSUE	0.01	0.2	0.0186	FALSE	0	1	0	2	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	ARL15--NDUFS4	1	1	ARL15	5950	chr5:53409032:-	NDUFS4	18000	chr5:52942063:+	ONLY_REF_SPLICE	NO	19	270	0.1	0.01	0.0093	0.0093	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	RH30_SOFT_TISSUE	0.01	0.1	0.0186	FALSE	5	61	2	9	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	CDC42BPB--TRAF3	1	1	CDC42BPB	1464	chr14:103523336:-	TRAF3	44191	chr14:103296671:+	ONLY_REF_SPLICE	NO	57	15	0.03	0.12	0.0093	0.0093	LOCAL_INVERSION:-:+:[20879],CDC42BPB->CDC42_binding_protein_kinase_beta,chr14:103398716-103523799:-,TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+	RH30_SOFT_TISSUE	0.03	0.12	0.0186	TRUE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	DSN1--PFKP	1	1	DSN1	1157	chr20:35402065:-	PFKP	36812	chr10:3172011:+	ONLY_REF_SPLICE	YES	39	367	0.05	0.01	0.0093	0.0093	DSN1->DSN1_homolog,_MIS12_kinetochore_complex_component,chr20:35380194-35402221:-,PFKP->chr10:3108525-3179904:+,phosphofructokinase,_platelet	RH30_SOFT_TISSUE	0.01	0.05	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	EFCAB4B--RP11-264F23.3	1	1	EFCAB4B	3710	chr12:3842108:-	RP11-264F23.3	38619	chr12:4358359:-	ONLY_REF_SPLICE	YES	21	0	0.09	1	0.0093	0.0093	EFCAB4B->chr12:3715799-3873985:-,RP11-264F23.3->chr12:4357931-4385350:-	RH30_SOFT_TISSUE	0.09	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000833
RH30_SOFT_TISSUE	KIAA1958--PTBP3	1	1	KIAA1958	1272	chr9:115249398:+	PTBP3	23004	chr9:115092754:-	ONLY_REF_SPLICE	YES	12	193	0.14	0.01	0.0093	0.0093	KIAA1958->KIAA1958,chr9:115249127-115431677:+,PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3	RH30_SOFT_TISSUE	0.01	0.14	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	KIF13A--RBM24	1	1	KIF13A	13353	chr6:17837109:-	RBM24	56734	chr6:17291987:+	ONLY_REF_SPLICE	NO	61	183	0.03	0.01	0.0093	0.0093	KIF13A->chr6:17759414-17987854:-,kinesin_family_member_13A,RBM24->RNA_binding_motif_protein_24,chr6:17281577-17294106:+	RH30_SOFT_TISSUE	0.01	0.03	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	MAMLD1--MTM1	1	1	MAMLD1	2992	chrX:149531797:+	MTM1	25175	chrX:149787511:+	ONLY_REF_SPLICE	NO	15	14	0.12	0.12	0.0093	0.0093	NEIGHBORS[54621],MAMLD1->chrX:149529689-149682448:+,mastermind_like_domain_containing_1,MTM1->chrX:149737069-149841795:+,myotubularin_1	RH30_SOFT_TISSUE	0.12	0.12	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	MEGF8--PPP1R13L	1	1	MEGF8	28122	chr19:42875634:+	PPP1R13L	38653	chr19:45901597:-	ONLY_REF_SPLICE	NO	128	5	0.02	0.29	0.0093	0.0093	MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8,PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like	RH30_SOFT_TISSUE	0.02	0.29	0.0186	TRUE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	NFKB1--PPA2	1	1	NFKB1	8561	chr4:103459113:+	PPA2	43222	chr4:106345479:-	ONLY_REF_SPLICE	YES	57	88	0.03	0.02	0.0093	0.0093	NFKB1->Oncogene{Bushman},chr4:103422486-103538459:+,nuclear_factor_kappa_B_subunit_1,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	RH30_SOFT_TISSUE	0.02	0.03	0.0186	TRUE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0093	0.0093	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RH30_SOFT_TISSUE	0.25	1	0.0186	FALSE	164	806	69	479	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	PHF21B--TBC1D22A	1	1	PHF21B	2455	chr22:45404426:-	TBC1D22A	37103	chr22:47287162:+	ONLY_REF_SPLICE	NO	13	80	0.13	0.02	0.0093	0.0093	PHF21B->PHD_finger_protein_21B,chr22:45277042-45405880:-,TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+	RH30_SOFT_TISSUE	0.02	0.13	0.0186	TRUE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	PRKAA1--RAD54L	1	1	PRKAA1	2454	chr5:40777547:-	RAD54L	30328	chr1:46743489:+	ONLY_REF_SPLICE	YES	134	56	0.01	0.03	0.0093	0.0093	PRKAA1->chr5:40759481-40798476:-,protein_kinase_AMP-activated_catalytic_subunit_alpha_1,RAD54L->RAD54-like_(S._cerevisiae),chr1:46713360-46744145:+	RH30_SOFT_TISSUE	0.01	0.03	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	PROSC--CHMP1A	1	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	136	387	0.01	0.01	0.0093	0.0093	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	RH30_SOFT_TISSUE	0.01	0.01	0.0186	FALSE	13	55	3	29	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	RBM27--LARS	1	1	RBM27	2394	chr5:145598666:+	LARS	36005	chr5:145547828:-	ONLY_REF_SPLICE	YES	58	168	0.03	0.01	0.0093	0.0093	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[20890],RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+,LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase	RH30_SOFT_TISSUE	0.01	0.03	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	RBM6--RHOA	1	1	RBM6	3185	chr3:50000118:+	RHOA	37115	chr3:49413024:-	ONLY_REF_SPLICE	NO	72	2018	0.03	0	0.0093	0.0093	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Lung=1,Pituitary=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	RH30_SOFT_TISSUE	0	0.03	0.0186	FALSE	0	4	1	6	1	FALSE	ACH-000833
RH30_SOFT_TISSUE	SLC30A9--RP11-650J17.1	1	1	SLC30A9	9986	chr4:42051496:+	RP11-650J17.1	29748	chr4:113901684:-	ONLY_REF_SPLICE	YES	104	0	0.02	1	0.0093	0.0093	SLC30A9->chr4:41992489-42092474:+,solute_carrier_family_30_member_9,RP11-650J17.1->chr4:113900746-113993118:-	RH30_SOFT_TISSUE	0.02	1	0.0186	TRUE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	TMEM181--DYNLT1	1	1	TMEM181	6914	chr6:159010814:+	DYNLT1	27019	chr6:159058926:-	ONLY_REF_SPLICE	NO	40	50	0.05	0.04	0.0093	0.0093	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Testis=1},LOCAL_INVERSION:+:-:[1046],TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181,DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1	RH30_SOFT_TISSUE	0.04	0.05	0.0186	TRUE	0	5	0	4	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	TRA2B--VPS8	1	1	TRA2B	1312	chr3:185655613:-	VPS8	80519	chr3:184742124:+	ONLY_REF_SPLICE	YES	729	37	0	0.05	0.0093	0.0093	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+	RH30_SOFT_TISSUE	0	0.05	0.0186	FALSE	0	0	0	2	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	TRAF7--TSC2	1	1	TRAF7	11480	chr16:2225954:+	TSC2	36373	chr16:2122850:+	ONLY_REF_SPLICE	NO	379	65	0.01	0.03	0.0093	0.0093	LOCAL_REARRANGEMENT:+:[66983],TRAF7->Oncogene{Bushman},TNF_receptor_associated_factor_7,chr16:2205699-2228130:+,TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2	RH30_SOFT_TISSUE	0.01	0.03	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	TTC19--BATF2	1	1	TTC19	6524	chr17:15909882:+	BATF2	18080	chr11:64762021:-	ONLY_REF_SPLICE	NO	75	0	0.03	1	0.0093	0.0093	TTC19->chr17:15902694-15948329:+,tetratricopeptide_repeat_domain_19,BATF2->basic_leucine_zipper_ATF-like_transcription_factor_2,chr11:64755415-64764517:-	RH30_SOFT_TISSUE	0.03	1	0.0186	TRUE	0	0	0	1	0	FALSE	ACH-000833
RH30_SOFT_TISSUE	TULP4--RP11-732M18.3	1	1	TULP4	2609	chr6:158735300:+	RP11-732M18.3	28124	chr6:158703295:+	ONLY_REF_SPLICE	NO	27	0	0.07	1	0.0093	0.0093	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	RH30_SOFT_TISSUE	0.07	1	0.0186	TRUE	121	131	5	12	0	FALSE	ACH-000833
LCLC97TM1_LUNG	CRTC1--TMEM59L	106	55	CRTC1	1152	chr19:18794638:+	TMEM59L	26995	chr19:18724682:+	ONLY_REF_SPLICE	YES	16	5	0.91	0.97	1.5053	0.781	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[62638],CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,TMEM59L->chr19:18718240-18731849:+,transmembrane_protein_59_like	LCLC97TM1_LUNG	0.91	0.97	2.2863	TRUE	0	0	0	1	0	TRUE	ACH-000596
LCLC97TM1_LUNG	TIMM23B--LINC00843	101	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4343	0.3976	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LCLC97TM1_LUNG	1	1	1.8319	TRUE	508	994	45	981	0	FALSE	ACH-000596
LCLC97TM1_LUNG	MT-TA--MT-TN	73	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0367	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	LCLC97TM1_LUNG	1	1	1.0367	FALSE	369	2501	205	193	0	FALSE	ACH-000596
LCLC97TM1_LUNG	TIMM23--RP11-464F9.1	49	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	126	4	0.28	0.93	0.6958	0.0142	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LCLC97TM1_LUNG	0.28	0.93	0.71	TRUE	519	3926	326	965	0	FALSE	ACH-000596
LCLC97TM1_LUNG	RPS2--NTHL1	35	50	RPS2	1585	chr16:2014277:-	NTHL1	7968	chr16:2096367:-	ONLY_REF_SPLICE	YES	8240	115	0.01	0.42	0.497	0.71	LOCAL_REARRANGEMENT:-:[74955],RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2,NTHL1->chr16:2089816-2097867:-,nth-like_DNA_glycosylase_1	LCLC97TM1_LUNG	0.01	0.42	1.207	TRUE	0	0	0	1	0	FALSE	ACH-000596
LCLC97TM1_LUNG	RP11-114H23.1--RP11-114H23.2	35	18	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	5	0	0.91	1	0.497	0.2556	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	LCLC97TM1_LUNG	0.91	1	0.7526	FALSE	81	155	12	160	0	FALSE	ACH-000596
LCLC97TM1_LUNG	RPS2--NTHL1	24	57	RPS2	1585	chr16:2014277:-	NTHL1	7943	chr16:2096392:-	INCL_NON_REF_SPLICE	YES	8240	122	0.01	0.4	0.3408	0.8095	LOCAL_REARRANGEMENT:-:[74955],RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2,NTHL1->chr16:2089816-2097867:-,nth-like_DNA_glycosylase_1	LCLC97TM1_LUNG	0.01	0.4	1.1503	TRUE	0	0	0	1	0	FALSE	ACH-000596
LCLC97TM1_LUNG	ZNF654--HMGB2	37	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5254	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LCLC97TM1_LUNG	1	1	0.5254	TRUE	0	0	0	518	0	FALSE	ACH-000596
LCLC97TM1_LUNG	MT-TA--MT-TC	33	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4686	0.0568	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LCLC97TM1_LUNG	1	1	0.5254	FALSE	462	80	0	856	0	FALSE	ACH-000596
LCLC97TM1_LUNG	OR51S1--TP53I11	21	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2982	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	LCLC97TM1_LUNG	1	1	0.2982	TRUE	402	216	10	229	0	FALSE	ACH-000596
LCLC97TM1_LUNG	RP11-96H19.1--RP11-446N19.1	17	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.96	0.96	0.2414	0.0852	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LCLC97TM1_LUNG	0.96	0.96	0.3266	FALSE	515	4851	409	746	0	FALSE	ACH-000596
LCLC97TM1_LUNG	CRTC1--TMEM59L	3	56	CRTC1	1152	chr19:18794638:+	TMEM59L	25974	chr19:18723661:+	ONLY_REF_SPLICE	YES	16	0	0.79	1	0.0426	0.7953	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[62638],CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,TMEM59L->chr19:18718240-18731849:+,transmembrane_protein_59_like	LCLC97TM1_LUNG	0.79	1	0.8379	TRUE	0	0	0	1	0	TRUE	ACH-000596
LCLC97TM1_LUNG	MT-TA--MT-TN	8	36	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1136	0.5112	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	LCLC97TM1_LUNG	1	1	0.6248	FALSE	369	2501	205	193	0	FALSE	ACH-000596
LCLC97TM1_LUNG	MT-TA--MT-TN	7	39	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0994	0.5538	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	LCLC97TM1_LUNG	1	1	0.6532	FALSE	369	2501	205	193	0	FALSE	ACH-000596
LCLC97TM1_LUNG	MT-TA--MT-TN	12	11	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1704	0.1562	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	LCLC97TM1_LUNG	1	1	0.3266	FALSE	369	2501	205	193	0	FALSE	ACH-000596
LCLC97TM1_LUNG	MTAP--CDKN2B-AS1	12	3	MTAP	8659	chr9:21838009:+	CDKN2B-AS1	40771	chr9:22112319:+	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.1704	0.0426	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	LCLC97TM1_LUNG	0.94	1	0.213	FALSE	0	2	0	2	0	FALSE	ACH-000596
LCLC97TM1_LUNG	MT-TA--MT-TN	5	29	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.071	0.4118	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	LCLC97TM1_LUNG	1	1	0.4828	FALSE	369	2501	205	193	0	FALSE	ACH-000596
LCLC97TM1_LUNG	NPM1P24--SET	9	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	33	1107	0.23	0.01	0.1278	0.0142	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LCLC97TM1_LUNG	0.01	0.23	0.142	TRUE	0	0	0	434	0	FALSE	ACH-000596
LCLC97TM1_LUNG	MT-TA--MT-TC	8	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1136	0.0568	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LCLC97TM1_LUNG	1	1	0.1704	FALSE	462	80	0	856	0	FALSE	ACH-000596
LCLC97TM1_LUNG	RP11-114H23.1--RP11-114H23.2	5	12	RP11-114H23.1	1242	chr12:76377554:-	RP11-114H23.2	12403	chr12:76088755:-	INCL_NON_REF_SPLICE	YES	6	0	0.74	1	0.071	0.1704	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	LCLC97TM1_LUNG	0.74	1	0.2414	FALSE	81	155	12	160	0	FALSE	ACH-000596
LCLC97TM1_LUNG	NPM1P24--SET	7	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	33	1003	0.2	0.01	0.0994	0.0142	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LCLC97TM1_LUNG	0.01	0.2	0.1136	TRUE	0	0	0	434	0	FALSE	ACH-000596
LCLC97TM1_LUNG	RPS2--NTHL1	4	11	RPS2	1585	chr16:2014277:-	NTHL1	9233	chr16:2094801:-	ONLY_REF_SPLICE	YES	8240	278	0	0.05	0.0568	0.1562	LOCAL_REARRANGEMENT:-:[74955],RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2,NTHL1->chr16:2089816-2097867:-,nth-like_DNA_glycosylase_1	LCLC97TM1_LUNG	0	0.05	0.213	TRUE	0	0	0	1	0	FALSE	ACH-000596
LCLC97TM1_LUNG	MTAP--CDKN2B-AS1	5	5	MTAP	8659	chr9:21838009:+	CDKN2B-AS1	39664	chr9:22097257:+	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.071	0.071	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	LCLC97TM1_LUNG	0.91	1	0.142	FALSE	0	1	0	2	0	FALSE	ACH-000596
LCLC97TM1_LUNG	RP11-114H23.1--RP11-114H23.2	3	11	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	5	0	0.74	1	0.0426	0.1562	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	LCLC97TM1_LUNG	0.74	1	0.1988	FALSE	81	155	12	160	0	FALSE	ACH-000596
LCLC97TM1_LUNG	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0568	0.0994	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LCLC97TM1_LUNG	0.92	1	0.1562	FALSE	407	2205	196	549	0	FALSE	ACH-000596
LCLC97TM1_LUNG	NPM1P24--SET	5	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	33	892	0.15	0.01	0.071	0.0142	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LCLC97TM1_LUNG	0.01	0.15	0.0852	FALSE	0	0	0	434	0	FALSE	ACH-000596
LCLC97TM1_LUNG	RPS2--NTHL1	4	2	RPS2	1585	chr16:2014277:-	NTHL1	10307	chr16:2093727:-	ONLY_REF_SPLICE	YES	8240	232	0	0.03	0.0568	0.0284	LOCAL_REARRANGEMENT:-:[74955],RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2,NTHL1->chr16:2089816-2097867:-,nth-like_DNA_glycosylase_1	LCLC97TM1_LUNG	0	0.03	0.0852	FALSE	0	0	0	1	0	FALSE	ACH-000596
LCLC97TM1_LUNG	FBXL20--C17orf104	4	1	FBXL20	3225	chr17:37499433:-	C17orf104	23504	chr17:42734495:+	ONLY_REF_SPLICE	YES	7	2	0.42	0.71	0.0568	0.0142	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,C17orf104->chr17:42733762-42767676:+	LCLC97TM1_LUNG	0.42	0.71	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000596
LCLC97TM1_LUNG	MTAP--CDKN2B-AS1	3	5	MTAP	8659	chr9:21838009:+	CDKN2B-AS1	38778	chr9:22096371:+	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0426	0.071	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	LCLC97TM1_LUNG	0.89	1	0.1136	FALSE	0	1	0	2	0	FALSE	ACH-000596
LCLC97TM1_LUNG	NPM1P24--SET	4	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	33	998	0.13	0	0.0568	0.0142	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LCLC97TM1_LUNG	0	0.13	0.071	FALSE	0	0	0	434	0	FALSE	ACH-000596
LCLC97TM1_LUNG	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.33	1	0.0568	0.0142	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LCLC97TM1_LUNG	0.33	1	0.071	FALSE	292	1546	117	613	0	FALSE	ACH-000596
LCLC97TM1_LUNG	CRTC1--TMEM59L	2	8	CRTC1	1152	chr19:18794638:+	TMEM59L	28319	chr19:18726785:+	ONLY_REF_SPLICE	YES	16	51	0.38	0.16	0.0284	0.1136	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[62638],CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,TMEM59L->chr19:18718240-18731849:+,transmembrane_protein_59_like	LCLC97TM1_LUNG	0.16	0.38	0.142	TRUE	0	0	0	1	0	TRUE	ACH-000596
LCLC97TM1_LUNG	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0568	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LCLC97TM1_LUNG	1	1	0.0568	FALSE	462	80	0	856	0	FALSE	ACH-000596
LCLC97TM1_LUNG	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0.0568	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LCLC97TM1_LUNG	1	1	0.0994	FALSE	462	80	0	856	0	FALSE	ACH-000596
LCLC97TM1_LUNG	MT-TA--MT-TN	4	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0568	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	LCLC97TM1_LUNG	1	1	0.0568	FALSE	369	2501	205	193	0	FALSE	ACH-000596
LCLC97TM1_LUNG	RP11-96H19.1--RP11-446N19.1	2	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.9	0.0284	0.0994	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LCLC97TM1_LUNG	0.9	1	0.1278	FALSE	467	2173	244	435	0	FALSE	ACH-000596
LCLC97TM1_LUNG	CRTC1--TMEM59L	3	2	CRTC1	1152	chr19:18794638:+	TMEM59L	30499	chr19:18728965:+	ONLY_REF_SPLICE	YES	16	56	0.24	0.08	0.0426	0.0284	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[62638],CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,TMEM59L->chr19:18718240-18731849:+,transmembrane_protein_59_like	LCLC97TM1_LUNG	0.08	0.24	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000596
LCLC97TM1_LUNG	NPM1P24--SET	3	1	NPM1P24	1533	chr10:74677760:-	SET	12307	chr9:131456202:+	INCL_NON_REF_SPLICE	NO	33	1010	0.11	0	0.0426	0.0142	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LCLC97TM1_LUNG	0	0.11	0.0568	FALSE	0	0	0	434	0	FALSE	ACH-000596
LCLC97TM1_LUNG	SCARB1--UBC	3	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	97	65	0.04	0.06	0.0426	0.0142	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	LCLC97TM1_LUNG	0.04	0.06	0.0568	TRUE	55	66	6	101	0	FALSE	ACH-000596
LCLC97TM1_LUNG	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	LCLC97TM1_LUNG	1	1	0.0426	TRUE	22	156	2	142	0	FALSE	ACH-000596
LCLC97TM1_LUNG	CRTC1--TMEM59L	2	3	CRTC1	1152	chr19:18794638:+	TMEM59L	29344	chr19:18727810:+	ONLY_REF_SPLICE	YES	16	51	0.24	0.09	0.0284	0.0426	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[62638],CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,TMEM59L->chr19:18718240-18731849:+,transmembrane_protein_59_like	LCLC97TM1_LUNG	0.09	0.24	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000596
LCLC97TM1_LUNG	RP11-680G10.1--GSE1	2	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	8	1	0.38	0.0284	0.0426	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LCLC97TM1_LUNG	0.38	1	0.071	TRUE	458	1351	185	561	0	FALSE	ACH-000596
LCLC97TM1_LUNG	MTAP--CDKN2B-AS1	2	1	MTAP	8659	chr9:21838009:+	CDKN2B-AS1	44409	chr9:22120503:+	ONLY_REF_SPLICE	NO	0	5	1	0.38	0.0284	0.0142	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	LCLC97TM1_LUNG	0.38	1	0.0426	FALSE	0	2	0	2	0	FALSE	ACH-000596
LCLC97TM1_LUNG	NRIP1--AF127936.7	1	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	56	0	0.1	1	0.0142	0.071	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LCLC97TM1_LUNG	0.1	1	0.0852	FALSE	164	806	69	479	0	FALSE	ACH-000596
LCLC97TM1_LUNG	TOP1--BCAS1	1	4	TOP1	1638	chr20:39658095:+	BCAS1	27277	chr20:52675262:-	ONLY_REF_SPLICE	YES	253	1	0.02	0.83	0.0142	0.0568	TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	LCLC97TM1_LUNG	0.02	0.83	0.071	TRUE	0	0	0	1	0	FALSE	ACH-000596
LCLC97TM1_LUNG	EDF1--NPDC1	1	1	EDF1	3072	chr9:139757358:-	NPDC1	10409	chr9:139935639:-	ONLY_REF_SPLICE	YES	511	126	0	0.02	0.0142	0.0142	{Klijn_CCL:Lung=1,Cervix=1,Pancreas=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,NPDC1->chr9:139933922-139940655:-,neural_proliferation,_differentiation_and_control,_1	LCLC97TM1_LUNG	0	0.02	0.0284	FALSE	0	0	0	5	0	FALSE	ACH-000596
LCLC97TM1_LUNG	NCOR2--UBC	1	1	NCOR2	12551	chr12:124922476:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	93	65	0.02	0.03	0.0142	0.0142	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	LCLC97TM1_LUNG	0.02	0.03	0.0284	TRUE	5	9	1	3	0	FALSE	ACH-000596
LCLC97TM1_LUNG	NCOR2--UBC	1	1	NCOR2	21671	chr12:124882665:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	86	65	0.02	0.03	0.0142	0.0142	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	LCLC97TM1_LUNG	0.02	0.03	0.0284	TRUE	30	26	0	16	0	FALSE	ACH-000596
LCLC97TM1_LUNG	ZC3HAV1L--CHMP1A	1	1	ZC3HAV1L	4872	chr7:138711454:-	CHMP1A	13652	chr16:89713739:-	ONLY_REF_SPLICE	YES	24	200	0.08	0.01	0.0142	0.0142	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Thyroid=[count:3=pct:1.7],Colon=[count:2=pct:1.0],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Lung=[count:1=pct:0.6],Skin=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},GTEx_v2:{count=21;pct=0.24%;dist=Thyroid=7,Breast_-_Mammary_Tissue=2,Lung=2,Adipose_-_Visceral_(Omentum)=2,Cells_-_Transformed_fibroblasts=2,Ovary=1,Minor_Salivary_Gland=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},ZC3HAV1L->chr7:138710452-138720775:-,zinc_finger_CCCH-type_containing,_antiviral_1_like,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	LCLC97TM1_LUNG	0.01	0.08	0.0284	FALSE	9	17	1	3	0	FALSE	ACH-000596
KYSE30_OESOPHAGUS	MT-TA--MT-TN	122	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3829	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE30_OESOPHAGUS	1	1	1.3829	FALSE	369	2501	205	193	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	UCK2--SELL	103	72	UCK2	1402	chr1:165797169:+	SELL	21576	chr1:169679658:-	ONLY_REF_SPLICE	YES	27	4	0.87	0.98	1.1675	0.8161	{Klijn_CCL:Head-Neck=1},UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,SELL->chr1:169659808-169680839:-,selectin_L	KYSE30_OESOPHAGUS	0.87	0.98	1.9836	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	MT-TA--MT-TC	81	14	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9182	0.1587	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE30_OESOPHAGUS	1	1	1.0769	FALSE	462	80	0	856	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	ACTB--NAB1	51	0	ACTB	7370	chr7:5567278:-	NAB1	16378	chr2:191523856:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5781	0	ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,NAB1->NGFI-A_binding_protein_1,chr2:191511472-191557492:+	KYSE30_OESOPHAGUS	1	1	0.5781	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	TIMM23B--LINC00843	41	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4647	0.1927	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KYSE30_OESOPHAGUS	1	1	0.6574	TRUE	508	994	45	981	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	AC074286.1--SEPP1	38	18	AC074286.1	1119	chr2:178257301:-	SEPP1	25895	chr5:42808468:-	ONLY_REF_SPLICE	YES	3	7	0.95	0.89	0.4307	0.204	AC074286.1->chr2:178148236-178257419:-,SEPP1->chr5:42799982-42887494:-,selenoprotein_P,_plasma,_1	KYSE30_OESOPHAGUS	0.89	0.95	0.6347	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	NRIP1--AF127936.7	29	6	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3287	0.068	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE30_OESOPHAGUS	1	1	0.3967	FALSE	292	1546	117	613	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	RP11-6N13.1--CTD-2374C24.1	24	17	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.272	0.1927	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	KYSE30_OESOPHAGUS	0.95	1	0.4647	TRUE	5	4	0	46	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	TIMM23--RP11-464F9.1	27	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	206	9	0.12	0.76	0.3061	0.0113	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KYSE30_OESOPHAGUS	0.12	0.76	0.3174	TRUE	519	3926	326	965	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-TA--MT-TN	14	51	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.1587	0.5781	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE30_OESOPHAGUS	1	1	0.7368	FALSE	369	2501	205	193	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	25	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	20500	5	0	0.84	0.2834	0.0113	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	0.84	0.2947	FALSE	230	193	14	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	POFUT2--PTCH2	23	8	POFUT2	6936	chr21:46696932:-	PTCH2	20776	chr1:45295433:-	ONLY_REF_SPLICE	YES	87	7	0.26	0.82	0.2607	0.0907	POFUT2->chr21:46683843-46707813:-,protein_O-fucosyltransferase_2,PTCH2->Oncogene{Bushman},chr1:45285516-45308735:-,patched_2	KYSE30_OESOPHAGUS	0.26	0.82	0.3514	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	16	25	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	2	0.89	0.95	0.1814	0.2834	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE30_OESOPHAGUS	0.89	0.95	0.4648	FALSE	515	4851	409	746	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	AP003900.6--AC008132.1	17	12	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	4	0	0.88	1	0.1927	0.136	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KYSE30_OESOPHAGUS	0.88	1	0.3287	TRUE	1	1	0	28	1	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-TA--MT-TC	16	14	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1814	0.1587	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE30_OESOPHAGUS	1	1	0.3401	FALSE	462	80	0	856	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	RP11-114H23.1--RP11-114H23.2	12	27	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	3	0	0.93	1	0.136	0.3061	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	KYSE30_OESOPHAGUS	0.93	1	0.4421	FALSE	81	155	12	160	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	WNK1--ERC1	13	19	WNK1	12527	chr12:971436:+	ERC1	76413	chr12:1553728:+	ONLY_REF_SPLICE	YES	46	52	0.41	0.38	0.1474	0.2154	{Klijn_CCL:Stomach=1,Kidney=1,Head-Neck=1},NEIGHBORS[79057],WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	KYSE30_OESOPHAGUS	0.38	0.41	0.3628	FALSE	0	0	0	1	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	16	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	20726	9	0	0.65	0.1814	0.0113	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	0.65	0.1927	FALSE	230	198	14	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	LSAMP-AS1--CREBL2	16	0	LSAMP-AS1	1070	chr3:116078940:+	CREBL2	9125	chr12:12788711:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1814	0	LSAMP-AS1->LSAMP_antisense_RNA_1,chr3:116078871-116088937:+,CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+	KYSE30_OESOPHAGUS	1	1	0.1814	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	C15orf57--CBX3	12	15	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	88	33	0.23	0.45	0.136	0.17	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KYSE30_OESOPHAGUS	0.23	0.45	0.306	TRUE	267	562	48	632	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-TA--MT-TN	5	39	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0.4421	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE30_OESOPHAGUS	1	1	0.4988	FALSE	369	2501	205	193	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-TA--MT-TC	10	17	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1134	0.1927	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE30_OESOPHAGUS	1	1	0.3061	FALSE	462	80	0	856	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	PCAT1--RP11-382A18.2	12	7	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.136	0.0793	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	KYSE30_OESOPHAGUS	0.9	1	0.2153	TRUE	4	84	1	46	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-TA--MT-TC	13	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1474	0.0113	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE30_OESOPHAGUS	1	1	0.1587	FALSE	462	80	0	856	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-TA--MT-TN	6	29	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.068	0.3287	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE30_OESOPHAGUS	1	1	0.3967	FALSE	369	2501	205	193	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MRPL33--SLC4A1AP	9	10	MRPL33	5678	chr2:28005561:+	SLC4A1AP	20493	chr2:27905115:+	ONLY_REF_SPLICE	YES	2	92	0.9	0.17	0.102	0.1134	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[76744],MRPL33->chr2:27994584-28210954:+,mitochondrial_ribosomal_protein_L33,SLC4A1AP->chr2:27886338-27917840:+,solute_carrier_family_4_member_1_adaptor_protein	KYSE30_OESOPHAGUS	0.17	0.9	0.2154	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	FLVCR1--CDC42BPA	10	5	FLVCR1	10124	chr1:213061936:+	CDC42BPA	39682	chr1:227268718:-	ONLY_REF_SPLICE	YES	21	21	0.42	0.42	0.1134	0.0567	{Klijn_CCL:Head-Neck=1},FLVCR1->chr1:213031597-213072705:+,feline_leukemia_virus_subgroup_C_cellular_receptor_1,CDC42BPA->CDC42_binding_protein_kinase_alpha,chr1:227177566-227506175:-	KYSE30_OESOPHAGUS	0.42	0.42	0.1701	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	MRPL33--SLC4A1AP	11	0	MRPL33	1976	chr2:27995559:+	SLC4A1AP	20493	chr2:27905115:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1247	0	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[76744],MRPL33->chr2:27994584-28210954:+,mitochondrial_ribosomal_protein_L33,SLC4A1AP->chr2:27886338-27917840:+,solute_carrier_family_4_member_1_adaptor_protein	KYSE30_OESOPHAGUS	1	1	0.1247	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	MT-TA--MT-TN	4	28	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0.3174	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE30_OESOPHAGUS	1	1	0.3627	FALSE	369	2501	205	193	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	NRIP1--AF127936.7	8	10	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.41	1	0.0907	0.1134	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE30_OESOPHAGUS	0.41	1	0.2041	FALSE	125	705	46	456	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	FAT2--USP10	7	13	FAT2	29665	chr5:150897181:-	USP10	45722	chr16:84767041:+	ONLY_REF_SPLICE	YES	22	130	0.48	0.13	0.0793	0.1474	FAT2->FAT_atypical_cadherin_2,Oncogene{Bushman},chr5:150883654-150948505:-,USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10	KYSE30_OESOPHAGUS	0.13	0.48	0.2267	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	RP11-114H23.1--RP11-114H23.2	5	21	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0567	0.238	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	KYSE30_OESOPHAGUS	0.9	1	0.2947	FALSE	81	155	12	160	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	C15orf57--CBX3	7	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	89	33	0.18	0.37	0.0793	0.136	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KYSE30_OESOPHAGUS	0.18	0.37	0.2153	TRUE	267	562	48	632	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-TA--MT-TN	10	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1134	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE30_OESOPHAGUS	1	1	0.1134	FALSE	369	2501	205	193	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-TA--MT-TY	10	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1134	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	KYSE30_OESOPHAGUS	1	1	0.1134	FALSE	13	214	14	42	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	3	28	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.86	1	0.034	0.3174	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE30_OESOPHAGUS	0.86	1	0.3514	FALSE	407	2205	196	549	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	NRIP1--AF127936.7	6	14	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	38	0	0.34	1	0.068	0.1587	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE30_OESOPHAGUS	0.34	1	0.2267	FALSE	164	806	69	479	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	ACOT7--PLEKHG5	8	4	ACOT7	4593	chr1:6420630:-	PLEKHG5	32301	chr1:6535198:-	ONLY_REF_SPLICE	YES	204	29	0.06	0.29	0.0907	0.0453	LOCAL_REARRANGEMENT:-:[71701],ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-,PLEKHG5->chr1:6526152-6580121:-,pleckstrin_homology_and_RhoGEF_domain_containing_G5	KYSE30_OESOPHAGUS	0.06	0.29	0.136	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	MT-TA--MT-TN	5	15	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0.17	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE30_OESOPHAGUS	1	1	0.2267	FALSE	369	2501	205	193	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	7	6	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	28507	9	0	0.59	0.0793	0.068	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	0.59	0.1473	FALSE	231	217	16	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	1	28	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	5	0	0.85	1	0.0113	0.3174	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE30_OESOPHAGUS	0.85	1	0.3287	FALSE	275	511	55	178	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	WNK1--ERC1	3	20	WNK1	17267	chr12:980514:+	ERC1	76413	chr12:1553728:+	ONLY_REF_SPLICE	YES	47	52	0.33	0.31	0.034	0.2267	{Klijn_CCL:Stomach=1,Kidney=1,Head-Neck=1},NEIGHBORS[79057],WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	KYSE30_OESOPHAGUS	0.31	0.33	0.2607	FALSE	0	0	0	1	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	5	11	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	26052	0	0	1	0.0567	0.1247	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	1	0.1814	FALSE	231	217	16	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	1	27	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.93	0.0113	0.3061	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE30_OESOPHAGUS	0.93	1	0.3174	FALSE	467	2173	244	435	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	AC074286.1--SEPP1	6	6	AC074286.1	1119	chr2:178257301:-	SEPP1	30606	chr5:42801433:-	ONLY_REF_SPLICE	YES	3	346	0.8	0.03	0.068	0.068	AC074286.1->chr2:178148236-178257419:-,SEPP1->chr5:42799982-42887494:-,selenoprotein_P,_plasma,_1	KYSE30_OESOPHAGUS	0.03	0.8	0.136	TRUE	0	0	0	1	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	7	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	22203	2010	0	0	0.0793	0.0113	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	0	0.0906	FALSE	231	204	14	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	5	8	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	28184	0	0	1	0.0567	0.0907	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	1	0.1474	FALSE	231	217	16	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	4	12	MT-ND4	2153	chrM:11912:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	14162	0	0	1	0.0453	0.136	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	1	0.1813	FALSE	231	215	16	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-TA--MT-TN	7	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0793	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE30_OESOPHAGUS	1	1	0.0793	FALSE	369	2501	205	193	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	6	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	24381	9	0	0.5	0.068	0.034	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	0.5	0.102	FALSE	231	205	14	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-TA--MT-TC	3	14	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0.1587	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE30_OESOPHAGUS	1	1	0.1927	FALSE	462	80	0	856	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	6	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	20500	9	0	0.44	0.068	0.0113	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	0.44	0.0793	FALSE	230	193	14	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	HSPBP1--GRK5	6	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.068	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KYSE30_OESOPHAGUS	1	1	0.068	TRUE	1	39	0	134	39	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	5	4	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	26903	0	0	1	0.0567	0.0453	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	1	0.102	FALSE	231	205	14	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-TA--MT-TN	3	12	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0.136	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE30_OESOPHAGUS	1	1	0.17	FALSE	369	2501	205	193	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	4	7	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	28313	1562	0	0.01	0.0453	0.0793	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	0.01	0.1246	FALSE	231	217	16	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	PLA2G16--C21orf58	4	7	PLA2G16	6267	chr11:63357572:-	C21orf58	23266	chr21:47720708:-	ONLY_REF_SPLICE	YES	493	2	0.02	0.85	0.0453	0.0793	PLA2G16->chr11:63340667-63384355:-,phospholipase_A2_group_XVI,C21orf58->chr21:47720095-47743789:-,chromosome_21_open_reading_frame_58	KYSE30_OESOPHAGUS	0.02	0.85	0.1246	TRUE	0	0	0	1	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	4	5	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	29652	0	0	1	0.0453	0.0567	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	1	0.102	FALSE	231	217	16	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	4	5	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	29726	0	0	1	0.0453	0.0567	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	1	0.102	FALSE	231	217	16	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	CEP170--RYR2	4	4	CEP170	21060	chr1:243327586:-	RYR2	144602	chr1:237954729:+	ONLY_REF_SPLICE	YES	13	0	0.38	1	0.0453	0.0453	CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,RYR2->chr1:237205505-237997288:+,ryanodine_receptor_2	KYSE30_OESOPHAGUS	0.38	1	0.0906	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	IQCE--MAP7D1	5	0	IQCE	28934	chr7:2650770:+	MAP7D1	36263	chr1:36621910:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0	IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+,MAP7D1->MAP7_domain_containing_1,chr1:36621180-36646450:+	KYSE30_OESOPHAGUS	1	1	0.0567	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	4	4	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	28789	1562	0	0.01	0.0453	0.0453	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	0.01	0.0906	FALSE	231	205	14	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	PHF15--MCL1	5	0	PHF15	20337	chr5:133914447:+	MCL1	30058	chr1:150549817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0	PHF15->chr5:133860003-133918918:+,MCL1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:150547032-150552066:-,myeloid_cell_leukemia_1	KYSE30_OESOPHAGUS	1	1	0.0567	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	3	7	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	28118	0	0	1	0.034	0.0793	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	1	0.1133	FALSE	231	217	16	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-TA--MT-TY	4	2	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0.0227	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	KYSE30_OESOPHAGUS	1	1	0.068	FALSE	13	214	14	42	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	RP11-120D5.1--MID1	4	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	60	0.75	0.09	0.0453	0.0227	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KYSE30_OESOPHAGUS	0.09	0.75	0.068	FALSE	16	356	14	466	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	3	5	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	32235	758	0	0.01	0.034	0.0567	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	0.01	0.0907	FALSE	231	217	16	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	4	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	NO	20500	0	0	1	0.0453	0.0113	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	1	0.0566	FALSE	230	193	14	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	3	5	MT-ND4	1503	chrM:11262:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	29839	0	0	1	0.034	0.0567	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	1	0.0907	FALSE	231	217	16	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	CEP170--RYR2	3	4	CEP170	21060	chr1:243327586:-	RYR2	145278	chr1:237955405:+	ONLY_REF_SPLICE	YES	13	1	0.35	0.88	0.034	0.0453	CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,RYR2->chr1:237205505-237997288:+,ryanodine_receptor_2	KYSE30_OESOPHAGUS	0.35	0.88	0.0793	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	KYSE30_OESOPHAGUS	1	1	0.0453	TRUE	22	156	2	142	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	3	3	MT-ND4	1285	chrM:11044:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	24590	9	0	0.4	0.034	0.034	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	0.4	0.068	FALSE	231	205	14	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	PLA2G16--C21orf58	3	3	PLA2G16	6267	chr11:63357572:-	C21orf58	23335	chr21:47720639:-	ONLY_REF_SPLICE	YES	493	7	0.01	0.46	0.034	0.034	PLA2G16->chr11:63340667-63384355:-,phospholipase_A2_group_XVI,C21orf58->chr21:47720095-47743789:-,chromosome_21_open_reading_frame_58	KYSE30_OESOPHAGUS	0.01	0.46	0.068	FALSE	0	0	0	1	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	RP11-6N13.1--CTD-2374C24.1	2	7	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	23469	chr5:104253599:-	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0227	0.0793	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	KYSE30_OESOPHAGUS	0.82	1	0.102	TRUE	0	0	0	4	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-TA--MT-TY	3	2	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0.0227	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	KYSE30_OESOPHAGUS	1	1	0.0567	FALSE	13	214	14	42	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	SMYD3--KCNK2	3	2	SMYD3	8315	chr1:246490503:-	KCNK2	38690	chr1:215297976:+	ONLY_REF_SPLICE	YES	40	43	0.11	0.1	0.034	0.0227	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,KCNK2->chr1:215179118-215410436:+,potassium_two_pore_domain_channel_subfamily_K_member_2	KYSE30_OESOPHAGUS	0.1	0.11	0.0567	TRUE	0	0	0	1	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	EIF1--ALDOA	3	1	EIF1	1092	chr17:39845228:+	ALDOA	14094	chr16:30077082:+	INCL_NON_REF_SPLICE	YES	12	476	0.25	0.01	0.034	0.0113	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	KYSE30_OESOPHAGUS	0.01	0.25	0.0453	FALSE	0	0	0	2	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	GNGT1--AC002076.10	2	5	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	1	1	0.88	0.88	0.0227	0.0567	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	KYSE30_OESOPHAGUS	0.88	0.88	0.0794	FALSE	0	28	0	37	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MT-ND4--MT-ATP8	3	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	20680	77	0	0.05	0.034	0.0113	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE30_OESOPHAGUS	0	0.05	0.0453	FALSE	230	198	14	283	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	NRIP1--AF127936.7	2	5	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	38	22	0.16	0.24	0.0227	0.0567	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE30_OESOPHAGUS	0.16	0.24	0.0794	FALSE	8	57	1	47	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	RAD51B--DCAF5	3	1	RAD51B	11638	chr14:68353921:+	DCAF5	42607	chr14:69589077:-	ONLY_REF_SPLICE	YES	18	160	0.18	0.02	0.034	0.0113	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+,DCAF5->DDB1_and_CUL4_associated_factor_5,chr14:69517598-69619867:-	KYSE30_OESOPHAGUS	0.02	0.18	0.0453	TRUE	0	1	0	1	1	FALSE	ACH-000777
KYSE30_OESOPHAGUS	C15orf57--CBX3	3	0	C15orf57	1082	chr15:40857175:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KYSE30_OESOPHAGUS	1	1	0.034	TRUE	0	0	0	2	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	LINC01036--LINC01037	3	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	KYSE30_OESOPHAGUS	1	1	0.034	FALSE	0	24	0	62	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	NRIP1--AF127936.7	2	4	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	0	22	1	0.21	0.0227	0.0453	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE30_OESOPHAGUS	0.21	1	0.068	FALSE	25	145	6	90	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	AC074286.1--SEPP1	1	7	AC074286.1	1119	chr2:178257301:-	SEPP1	29488	chr5:42804875:-	ONLY_REF_SPLICE	YES	3	264	0.73	0.03	0.0113	0.0793	AC074286.1->chr2:178148236-178257419:-,SEPP1->chr5:42799982-42887494:-,selenoprotein_P,_plasma,_1	KYSE30_OESOPHAGUS	0.03	0.73	0.0906	TRUE	0	0	0	1	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	AP003900.6--AC008132.1	1	7	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	4	2	0.67	0.8	0.0113	0.0793	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KYSE30_OESOPHAGUS	0.67	0.8	0.0906	TRUE	0	0	0	11	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	CLIC1--RPL7	2	3	CLIC1	4985	chr6:31701613:-	RPL7	14663	chr8:74203896:-	ONLY_REF_SPLICE	YES	3738	7535	0	0	0.0227	0.034	CLIC1->chloride_intracellular_channel_1,chr6:31698358-31707540:-,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	KYSE30_OESOPHAGUS	0	0	0.0567	FALSE	0	0	0	12	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	MYH10--LINC01052	2	3	MYH10	4889	chr17:8492399:-	LINC01052	49077	chr13:66449839:+	ONLY_REF_SPLICE	YES	30	0	0.14	1	0.0227	0.034	MYH10->chr17:8377523-8534079:-,myosin,_heavy_chain_10,_non-muscle,LINC01052->chr13:66440306-66452351:+,long_intergenic_non-protein_coding_RNA_1052	KYSE30_OESOPHAGUS	0.14	1	0.0567	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	MYH10--LINC01052	2	3	MYH10	4889	chr17:8492399:-	LINC01052	50140	chr13:66451989:+	ONLY_REF_SPLICE	YES	30	0	0.14	1	0.0227	0.034	MYH10->chr17:8377523-8534079:-,myosin,_heavy_chain_10,_non-muscle,LINC01052->chr13:66440306-66452351:+,long_intergenic_non-protein_coding_RNA_1052	KYSE30_OESOPHAGUS	0.14	1	0.0567	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	MIR205HG--EML2	2	2	MIR205HG	4006	chr1:209605170:+	EML2	14776	chr19:46142131:-	ONLY_REF_SPLICE	YES	1247	77	0	0.05	0.0227	0.0227	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,EML2->chr19:46110252-46148887:-,echinoderm_microtubule_associated_protein_like_2	KYSE30_OESOPHAGUS	0	0.05	0.0454	FALSE	0	0	0	3	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	ATP11A--ING1	2	1	ATP11A	1127	chr13:113344769:+	ING1	51028	chr13:111371576:+	ONLY_REF_SPLICE	YES	15	161	0.17	0.02	0.0227	0.0113	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	KYSE30_OESOPHAGUS	0.02	0.17	0.034	TRUE	0	1	0	1	1	FALSE	ACH-000777
KYSE30_OESOPHAGUS	CPSF6--C9orf3	2	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	197	155	0.01	0.02	0.0227	0.0113	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	KYSE30_OESOPHAGUS	0.01	0.02	0.034	FALSE	53	99	2	44	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	DDX5--TOB1	2	1	DDX5	3124	chr17:62502194:-	TOB1	15367	chr17:48941524:-	ONLY_REF_SPLICE	YES	1591	69	0	0.04	0.0227	0.0113	GTEx&tcga_normals:1/3694=0.03%,DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-,TOB1->chr17:48939584-48945339:-,transducer_of_ERBB2,_1	KYSE30_OESOPHAGUS	0	0.04	0.034	FALSE	0	0	0	1	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	GNGT1--AC002076.10	1	5	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0113	0.0567	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	KYSE30_OESOPHAGUS	0.86	0.86	0.068	FALSE	0	10	0	30	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	RAB20--ING1	2	1	RAB20	1386	chr13:111213695:-	ING1	10788	chr13:111371576:+	ONLY_REF_SPLICE	YES	246	161	0.01	0.02	0.0227	0.0113	GTEx_FI:{Blood=[count:3=pct:1.7],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=3,Lung=1,Adrenal_Gland=1},RAB20->RAB20,_member_RAS_oncogene_family,chr13:111175417-111214080:-,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	KYSE30_OESOPHAGUS	0.01	0.02	0.034	FALSE	4	0	0	3	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	RBM26--SPRY2	2	1	RBM26	1774	chr13:79979839:-	SPRY2	35366	chr13:80911891:-	ONLY_REF_SPLICE	YES	9	134	0.25	0.02	0.0227	0.0113	RBM26->RNA_binding_motif_protein_26,chr13:79885962-79980612:-,SPRY2->chr13:80910111-80915086:-,sprouty_RTK_signaling_antagonist_2	KYSE30_OESOPHAGUS	0.02	0.25	0.034	TRUE	0	0	0	1	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	RP11-1L12.3--SLC5A12	1	5	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	NO	4	0	0.6	1	0.0113	0.0567	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	KYSE30_OESOPHAGUS	0.6	1	0.068	TRUE	3	101	0	60	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	ATF3--PWWP2B	2	0	ATF3	2411	chr1:212782272:+	PWWP2B	13073	chr10:134218130:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ATF3->Oncogene{Bushman},activating_transcription_factor_3,chr1:212738676-212794119:+,PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	CCDC64B--EEF1A1	2	0	CCDC64B	1033	chr16:3086895:-	EEF1A1	14877	chr6:74229779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	CCDC64B->chr16:3077683-3086927:-,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	CDKN1A--EEF1A1	2	0	CDKN1A	3054	chr6:36646575:+	EEF1A1	15905	chr6:74229779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1},CDKN1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:36644305-36655116:+,cyclin-dependent_kinase_inhibitor_1A,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	1	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	CFL1--FOSL1	2	0	CFL1	4089	chr11:65625568:-	FOSL1	17279	chr11:65664477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_REARRANGEMENT:-:[30023],CFL1->chr11:65590493-65629497:-,cofilin_1,FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	NCK2--PER1	2	0	NCK2	1242	chr2:106361595:+	PER1	15933	chr17:8054163:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+,PER1->Oncogene{Bushman},chr17:8043790-8059824:-,period_circadian_clock_1	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	NDFIP2--RBM26	2	0	NDFIP2	5948	chr13:80113910:+	RBM26	37852	chr13:79908565:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:+:-:[74675],NDFIP2->Nedd4_family_interacting_protein_2,chr13:80055287-80130210:+,RBM26->RNA_binding_motif_protein_26,chr13:79885962-79980612:-	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	RALGPS1--GARNL3	2	0	RALGPS1	4984	chr9:129740024:+	GARNL3	75266	chr9:130149472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NEIGHBORS[1099],RALGPS1->Ral_GEF_with_PH_domain_and_SH3_binding_motif_1,chr9:129677053-129985445:+,GARNL3->GTPase_activating_Rap/RanGAP_domain_like_3,chr9:129986544-130155939:+	KYSE30_OESOPHAGUS	1	1	0.0227	FALSE	0	0	0	1	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	RORC--GOSR1	2	0	RORC	7267	chr1:151787389:-	GOSR1	20192	chr17:28808161:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RORC->Oncogene{Bushman},RAR_related_orphan_receptor_C,chr1:151778547-151804348:-,GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	SEP15--HS2ST1	2	0	SEP15	1397	chr1:87379711:-	HS2ST1	15816	chr1:87538617:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_INVERSION:-:+:[224],SEP15->chr1:87328132-87380107:-,HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	WTAPP1--RUVBL1	2	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	9	252	6	66	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	ZNF696--ZBTB2	2	0	ZNF696	4390	chr8:144375235:+	ZBTB2	12450	chr6:151694784:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	HGNC_GENEFAM,PROTCLUST,ZNF696->chr8:144371846-144380231:+,zinc_finger_protein_696,ZBTB2->ArcherDX_panel,FoundationOne_panel,chr6:151685252-151712683:-,zinc_finger_and_BTB_domain_containing_2	KYSE30_OESOPHAGUS	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	CTD-2033A16.3--CLEC18A	1	2	CTD-2033A16.3	1163	chr16:69761078:+	CLEC18A	9020	chr16:69988237:+	ONLY_REF_SPLICE	NO	12	1	0.2	0.75	0.0113	0.0227	CTD-2033A16.3->chr16:69760916-69776466:+,CLEC18A->C-type_lectin_domain_family_18_member_A,chr16:69984810-69998141:+	KYSE30_OESOPHAGUS	0.2	0.75	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	HIAT1--ETS2	1	2	HIAT1	1220	chr1:100503872:+	ETS2	20122	chr21:40181959:+	ONLY_REF_SPLICE	YES	298	55	0.01	0.05	0.0113	0.0227	HIAT1->chr1:100503653-100548933:+,ETS2->ETS_proto-oncogene_2,_transcription_factor,Oncogene{Bushman},chr21:40177231-40196879:+	KYSE30_OESOPHAGUS	0.01	0.05	0.034	FALSE	0	0	0	1	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	POFUT2--PTCH2	1	2	POFUT2	6936	chr21:46696932:-	PTCH2	21004	chr1:45295205:-	ONLY_REF_SPLICE	YES	87	23	0.03	0.12	0.0113	0.0227	POFUT2->chr21:46683843-46707813:-,protein_O-fucosyltransferase_2,PTCH2->Oncogene{Bushman},chr1:45285516-45308735:-,patched_2	KYSE30_OESOPHAGUS	0.03	0.12	0.034	TRUE	0	0	0	1	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	SMYD3--KCNK2	1	2	SMYD3	8315	chr1:246490503:-	KCNK2	37379	chr1:215259711:+	ONLY_REF_SPLICE	YES	40	22	0.07	0.12	0.0113	0.0227	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,KCNK2->chr1:215179118-215410436:+,potassium_two_pore_domain_channel_subfamily_K_member_2	KYSE30_OESOPHAGUS	0.07	0.12	0.034	TRUE	0	0	0	1	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	TBC1D25--EBP	1	2	TBC1D25	3777	chrX:48403411:+	EBP	15100	chrX:48385377:+	ONLY_REF_SPLICE	YES	23	88	0.12	0.03	0.0113	0.0227	LOCAL_REARRANGEMENT:+:[10741],TBC1D25->TBC1_domain_family_member_25,chrX:48397845-48420997:+,EBP->chrX:48379546-48387104:+,emopamil_binding_protein_(sterol_isomerase)	KYSE30_OESOPHAGUS	0.03	0.12	0.034	TRUE	0	0	0	1	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	TPM4--KLF2	1	2	TPM4	3954	chr19:16187507:+	KLF2	22779	chr19:16437667:+	ONLY_REF_SPLICE	YES	1081	69	0	0.04	0.0113	0.0227	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Blood=[count:5=pct:2.9],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:2=pct:1.0],Whole_Blood=[count:2=pct:1.5],Esophagus=[count:2=pct:0.5],Blood_Vessel=[count:2=pct:0.5],Small_Intestine=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Lung=[count:1=pct:0.6]},TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4,KLF2->Kruppel-like_factor_2,chr19:16435628-16438685:+	KYSE30_OESOPHAGUS	0	0.04	0.034	FALSE	14	17	1	2	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	AFF4--HSPA4	1	1	AFF4	1376	chr5:132298951:-	HSPA4	35391	chr5:132400672:+	ONLY_REF_SPLICE	YES	85	423	0.02	0	0.0113	0.0113	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_INVERSION:-:+:[88328],AFF4->AF4/FMR2_family_member_4,Oncogene{Bushman},chr5:132211071-132299326:-,HSPA4->chr5:132387654-132442141:+,heat_shock_protein_family_A_(Hsp70)_member_4	KYSE30_OESOPHAGUS	0	0.02	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	NO	0	984	1	0	0.0113	0.0113	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	KYSE30_OESOPHAGUS	0	1	0.0226	FALSE	347	1186	183	220	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	LSM10--RBM27	1	1	LSM10	4071	chr1:36857959:-	RBM27	14683	chr5:145613013:+	ONLY_REF_SPLICE	YES	2	53	0.5	0.04	0.0113	0.0113	LSM10->LSM10,_U7_small_nuclear_RNA_associated,chr1:36856839-36863493:-,RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+	KYSE30_OESOPHAGUS	0.04	0.5	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000777
KYSE30_OESOPHAGUS	PPP1R12C--GAK	1	1	PPP1R12C	8950	chr19:55610152:-	GAK	24941	chr4:898567:-	ONLY_REF_SPLICE	YES	167	247	0.01	0.01	0.0113	0.0113	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase	KYSE30_OESOPHAGUS	0.01	0.01	0.0226	FALSE	0	1	0	2	1	FALSE	ACH-000777
KYSE30_OESOPHAGUS	PROSC--CHMP1A	1	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	197	504	0.01	0	0.0113	0.0113	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	KYSE30_OESOPHAGUS	0	0.01	0.0226	FALSE	13	55	3	29	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	SMYD3--KCNK2	1	1	SMYD3	7178	chr1:246493782:-	KCNK2	37379	chr1:215259711:+	ONLY_REF_SPLICE	YES	60	22	0.03	0.08	0.0113	0.0113	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,KCNK2->chr1:215179118-215410436:+,potassium_two_pore_domain_channel_subfamily_K_member_2	KYSE30_OESOPHAGUS	0.03	0.08	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000777
KYSE30_OESOPHAGUS	TPM4--CCNG2	1	1	TPM4	3954	chr19:16187507:+	CCNG2	22122	chr4:78079686:+	ONLY_REF_SPLICE	YES	1081	176	0	0.01	0.0113	0.0113	TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4,CCNG2->chr4:78078304-78354542:+,cyclin_G2	KYSE30_OESOPHAGUS	0	0.01	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000777
NCIH1838_LUNG	NFIC--HADHB	135	21	NFIC	9118	chr19:3435205:+	HADHB	28324	chr2:26477115:+	ONLY_REF_SPLICE	YES	24	5	0.87	0.97	1.1725	0.1824	NFIC->Oncogene{Bushman},chr19:3359561-3469215:+,nuclear_factor_I_C,HADHB->chr2:26466038-26513336:+,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_beta_subunit	NCIH1838_LUNG	0.87	0.97	1.3549	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	TIMM23B--LINC00843	133	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.97	1.1551	0.165	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1838_LUNG	0.97	1	1.3201	TRUE	508	994	45	981	0	FALSE	ACH-000733
NCIH1838_LUNG	TIMM23--RP11-464F9.1	82	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	126	0	0.41	1	0.7122	0.0434	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1838_LUNG	0.41	1	0.7556	TRUE	519	3926	326	965	0	FALSE	ACH-000733
NCIH1838_LUNG	UBAP2--TOM1	74	3	UBAP2	10919	chr9:33986758:-	TOM1	43996	chr22:35723264:+	ONLY_REF_SPLICE	YES	27	40	0.74	0.66	0.6427	0.0261	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,TOM1->chr22:35695268-35743985:+,target_of_myb1_membrane_trafficking_protein	NCIH1838_LUNG	0.66	0.74	0.6688	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	MT-TA--MT-TC	70	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.608	0.0869	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1838_LUNG	1	1	0.6949	FALSE	462	80	0	856	0	FALSE	ACH-000733
NCIH1838_LUNG	SPIDR--DDX11L2	51	21	SPIDR	13881	chr8:48320523:+	DDX11L2	40010	chr2:114359006:-	INCL_NON_REF_SPLICE	YES	25	0	0.74	1	0.4429	0.1824	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	NCIH1838_LUNG	0.74	1	0.6253	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	PLXDC1--TAF13	55	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4777	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH1838_LUNG	1	1	0.4777	TRUE	7	10	0	216	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	5	191	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	10	1	0.95	0.99	0.0434	1.6589	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	0.95	0.99	1.7023	FALSE	344	826	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	3	192	MT-ND4	1105	chrM:10864:+	MT-ND4L	5459	chrM:10550:+	INCL_NON_REF_SPLICE	NO	4	0	0.98	1	0.0261	1.6676	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	0.98	1	1.6937	FALSE	344	826	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	17	133	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	1	0.98	0.99	0.1476	1.1551	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	0.98	0.99	1.3027	FALSE	344	821	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	6	160	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	2	1	0.99	0.99	0.0521	1.3896	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	0.99	0.99	1.4417	FALSE	344	826	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	GALNT7--CTD-2012I17.1	41	11	GALNT7	1209	chr4:174090112:+	CTD-2012I17.1	23798	chr4:135710386:+	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.3561	0.0955	GALNT7->chr4:174089904-174245118:+,polypeptide_N-acetylgalactosaminyltransferase_7,CTD-2012I17.1->chr4:135680554-135738444:+	NCIH1838_LUNG	0.98	1	0.4516	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	MT-CO3--MT-ATP6	24	65	MT-CO3	1153	chrM:9359:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	9	4	0.91	0.96	0.2084	0.5645	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1838_LUNG	0.91	0.96	0.7729	FALSE	189	492	56	216	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	5	126	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	5	0	0.96	1	0.0434	1.0943	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	0.96	1	1.1377	FALSE	344	826	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	RNF121--NARS2	31	19	RNF121	3604	chr11:71671937:+	NARS2	31288	chr11:78152163:-	ONLY_REF_SPLICE	YES	80	59	0.38	0.46	0.2692	0.165	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	NCIH1838_LUNG	0.38	0.46	0.4342	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	LAMTOR1--P2RY2	31	7	LAMTOR1	4264	chr11:71809335:-	P2RY2	12511	chr11:72939026:+	ONLY_REF_SPLICE	YES	295	30	0.11	0.56	0.2692	0.0608	LAMTOR1->chr11:71796941-71814433:-,late_endosomal/lysosomal_adaptor,_MAPK_and_MTOR_activator_1,P2RY2->chr11:72929343-72947397:+,purinergic_receptor_P2Y2	NCIH1838_LUNG	0.11	0.56	0.33	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	MT-ND6--MT-TE	32	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2779	0.0087	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1838_LUNG	0.97	1	0.2866	FALSE	499	1288	110	792	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	3	116	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	22	0	0.84	1	0.0261	1.0075	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	0.84	1	1.0336	FALSE	344	827	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	NRIP1--AF127936.7	31	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.2692	0.0087	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1838_LUNG	0.94	1	0.2779	FALSE	292	1546	117	613	0	FALSE	ACH-000733
NCIH1838_LUNG	KANSL1--ARL17B	29	7	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	35	46	0.51	0.44	0.2519	0.0608	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH1838_LUNG	0.44	0.51	0.3127	TRUE	181	1564	124	196	0	FALSE	ACH-000733
NCIH1838_LUNG	HSP90AB1--MT-RNR2	30	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3149	0	0.01	1	0.2606	0.0174	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1838_LUNG	0.01	1	0.278	FALSE	13	9	0	364	0	FALSE	ACH-000733
NCIH1838_LUNG	NIPA2--POLA1	27	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2345	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	NCIH1838_LUNG	1	1	0.2345	TRUE	46	1352	75	139	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-CO3--MT-ATP6	9	64	MT-CO3	1126	chrM:9332:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	7	4	0.91	0.95	0.0782	0.5559	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1838_LUNG	0.91	0.95	0.6341	FALSE	189	492	56	216	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-CO3--MT-ATP6	4	63	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	5	35	0.93	0.66	0.0347	0.5472	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1838_LUNG	0.66	0.93	0.5819	FALSE	189	492	56	216	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-CO1--MT-RNR2	14	22	MT-CO1	2223	chrM:7126:+	MT-RNR2	5562	chrM:1690:+	INCL_NON_REF_SPLICE	YES	16759	0	0	1	0.1216	0.1911	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1838_LUNG	0	1	0.3127	FALSE	44	51	6	21	0	FALSE	ACH-000733
NCIH1838_LUNG	PCMT1--LATS1	17	8	PCMT1	5894	chr6:150094305:+	LATS1	21217	chr6:150016357:-	ONLY_REF_SPLICE	YES	217	12	0.1	0.68	0.1476	0.0695	{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[31187],PCMT1->chr6:150070579-150132556:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase,LATS1->Oncogene{Bushman},chr6:149979289-150039392:-,large_tumor_suppressor_kinase_1	NCIH1838_LUNG	0.1	0.68	0.2171	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	MT-CO3--MT-ATP6	3	63	MT-CO3	1105	chrM:9311:+	MT-ATP6	5163	chrM:8905:+	INCL_NON_REF_SPLICE	YES	6	82	0.92	0.45	0.0261	0.5472	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1838_LUNG	0.45	0.92	0.5733	FALSE	189	492	56	216	0	FALSE	ACH-000733
NCIH1838_LUNG	NARS2--FCHSD2	17	6	NARS2	7420	chr11:78270585:-	FCHSD2	23219	chr11:72794785:-	ONLY_REF_SPLICE	YES	56	13	0.29	0.64	0.1476	0.0521	NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	NCIH1838_LUNG	0.29	0.64	0.1997	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	RP11-123O10.4--GRIP1	17	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1476	0.0174	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1838_LUNG	1	1	0.165	FALSE	416	2512	207	587	0	FALSE	ACH-000733
NCIH1838_LUNG	ZBTB24--KCTD1	17	2	ZBTB24	5652	chr6:109796602:-	KCTD1	17888	chr18:24161693:-	ONLY_REF_SPLICE	YES	9	0	0.68	1	0.1476	0.0174	ZBTB24->chr6:109783797-109804440:-,zinc_finger_and_BTB_domain_containing_24,KCTD1->chr18:24034874-24237365:-,potassium_channel_tetramerization_domain_containing_1	NCIH1838_LUNG	0.68	1	0.165	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	HSP90AB1--MT-RNR2	17	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3194	0	0.01	1	0.1476	0.0087	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1838_LUNG	0.01	1	0.1563	FALSE	13	9	0	364	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ATP6--MT-CO2	16	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	65	3	0.24	0.88	0.139	0.0434	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1838_LUNG	0.24	0.88	0.1824	FALSE	59	21	0	114	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-TA--MT-TC	15	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1303	0.0695	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1838_LUNG	1	1	0.1998	FALSE	462	80	0	856	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	4	51	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	286	0	0.16	1	0.0347	0.4429	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	0.16	1	0.4776	FALSE	344	827	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	4	50	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	13	0	0.81	1	0.0347	0.4343	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	0.81	1	0.469	FALSE	344	826	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	KSR1--CDH12P3	15	2	KSR1	15576	chr17:25915561:+	CDH12P3	39015	chr5:69428506:+	ONLY_REF_SPLICE	YES	9	0	0.65	1	0.1303	0.0174	KSR1->Oncogene{Bushman},chr17:25783670-25953461:+,kinase_suppressor_of_ras_1,CDH12P3->cadherin_12_pseudogene_3,chr5:69428506-69428800:+	NCIH1838_LUNG	0.65	1	0.1477	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	7	34	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	3437	0	0.01	1	0.0608	0.2953	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	0.01	1	0.3561	FALSE	344	827	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	7	34	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	170	0	0.19	1	0.0608	0.2953	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	0.19	1	0.3561	FALSE	344	827	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND6--MT-TE	14	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1216	0.0434	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1838_LUNG	0.95	1	0.165	FALSE	499	1288	110	792	0	FALSE	ACH-000733
NCIH1838_LUNG	LIN52--SAMD4A	14	4	LIN52	3937	chr14:74562688:+	SAMD4A	25782	chr14:55168780:+	ONLY_REF_SPLICE	YES	32	110	0.36	0.14	0.1216	0.0347	LIN52->chr14:74551499-74667936:+,lin-52_DREAM_MuvB_core_complex_component,SAMD4A->chr14:55033815-55260033:+,sterile_alpha_motif_domain_containing_4A	NCIH1838_LUNG	0.14	0.36	0.1563	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	MT-CO3--MT-ATP6	4	42	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	NO	2	0	0.96	1	0.0347	0.3648	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1838_LUNG	0.96	1	0.3995	FALSE	189	492	56	216	0	FALSE	ACH-000733
NCIH1838_LUNG	NRIP1--AF127936.7	10	14	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	35	0	0.41	1	0.0869	0.1216	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1838_LUNG	0.41	1	0.2085	FALSE	164	806	69	479	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND6--MT-TE	11	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0955	0.0782	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1838_LUNG	1	1	0.1737	FALSE	499	1288	110	792	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	6	27	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	12	0	0.73	1	0.0521	0.2345	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	0.73	1	0.2866	FALSE	344	826	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	RPSAP52--HMGA2	12	3	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	19	271	0.44	0.05	0.1042	0.0261	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	NCIH1838_LUNG	0.05	0.44	0.1303	FALSE	0	59	0	125	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	9	14	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	13	0	0.64	1	0.0782	0.1216	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	0.64	1	0.1998	FALSE	344	826	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-TL1--MT-RNR2	4	33	MT-TL1	1095	chrM:3324:+	MT-RNR2	5554	chrM:3149:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.0347	0.2866	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1838_LUNG	0.97	1	0.3213	FALSE	7	521	16	32	0	FALSE	ACH-000733
NCIH1838_LUNG	RP11-96H19.1--RP11-446N19.1	11	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0955	0.0261	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1838_LUNG	0.93	1	0.1216	FALSE	515	4851	409	746	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-CO1--MT-RNR2	8	10	MT-CO1	1642	chrM:6545:+	MT-RNR2	6082	chrM:2210:+	INCL_NON_REF_SPLICE	YES	17508	10491	0	0	0.0695	0.0869	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1838_LUNG	0	0	0.1564	FALSE	44	51	6	21	0	FALSE	ACH-000733
NCIH1838_LUNG	SPIDR--DDX11L2	10	2	SPIDR	13881	chr8:48320523:+	DDX11L2	40613	chr2:114358403:-	ONLY_REF_SPLICE	YES	25	1	0.32	0.92	0.0869	0.0174	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	NCIH1838_LUNG	0.32	0.92	0.1043	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	MT-CO3--MT-ATP6	10	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	8	0	0.58	1	0.0869	0.0087	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1838_LUNG	0.58	1	0.0956	FALSE	189	492	56	216	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND6--MT-TE	8	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0695	0.0521	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1838_LUNG	0.93	1	0.1216	FALSE	499	1288	110	792	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ATP6--MT-CO2	8	5	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	64	3	0.17	0.81	0.0695	0.0434	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1838_LUNG	0.17	0.81	0.1129	FALSE	59	21	0	114	0	FALSE	ACH-000733
NCIH1838_LUNG	NRIP1--AF127936.7	8	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.39	1	0.0695	0.0434	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1838_LUNG	0.39	1	0.1129	FALSE	125	705	46	456	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ATP8	9	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0782	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1838_LUNG	1	1	0.0782	FALSE	231	205	14	283	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ATP8	8	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	10968	2	0	0.83	0.0695	0.0174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1838_LUNG	0	0.83	0.0869	FALSE	231	217	16	283	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	5	14	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	19	0	0.5	1	0.0434	0.1216	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	0.5	1	0.165	FALSE	344	827	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ATP8	7	5	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2118	31	0.01	0.28	0.0608	0.0434	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1838_LUNG	0.01	0.28	0.1042	FALSE	216	209	16	281	0	FALSE	ACH-000733
NCIH1838_LUNG	RP1-34H18.1--RP11-781A6.1	8	1	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0695	0.0087	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	NCIH1838_LUNG	1	1	0.0782	TRUE	94	160	11	37	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-CO3--MT-ATP6	8	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0695	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1838_LUNG	1	1	0.0695	FALSE	189	492	56	216	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	7	4	MT-ND4	1031	chrM:10790:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0608	0.0347	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	0.92	1	0.0955	FALSE	344	821	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0695	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1838_LUNG	1	1	0.0695	FALSE	462	80	0	856	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-CO1--MT-RNR2	5	11	MT-CO1	1635	chrM:6538:+	MT-RNR2	5554	chrM:1682:+	INCL_NON_REF_SPLICE	YES	16940	0	0	1	0.0434	0.0955	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1838_LUNG	0	1	0.1389	FALSE	44	51	6	21	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-CO1--MT-RNR2	3	18	MT-CO1	1976	chrM:6879:+	MT-RNR2	5563	chrM:1691:+	INCL_NON_REF_SPLICE	YES	21615	0	0	1	0.0261	0.1563	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1838_LUNG	0	1	0.1824	FALSE	44	51	6	21	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ATP6--MT-CO2	7	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	40	12	0.17	0.4	0.0608	0.0087	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1838_LUNG	0.17	0.4	0.0695	FALSE	59	21	0	114	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ATP6--MT-CO2	6	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	65	3	0.14	0.79	0.0521	0.0434	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1838_LUNG	0.14	0.79	0.0955	FALSE	59	21	0	114	0	FALSE	ACH-000733
NCIH1838_LUNG	EIF1--RPS28	7	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0608	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH1838_LUNG	1	1	0.0608	TRUE	0	0	0	81	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-TL1--MT-RNR2	7	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0608	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1838_LUNG	1	1	0.0608	FALSE	7	521	16	32	0	FALSE	ACH-000733
NCIH1838_LUNG	RP11-59N23.3--CMAS	6	3	RP11-59N23.3	2631	chr12:21913019:+	CMAS	6999	chr12:22208083:+	INCL_NON_REF_SPLICE	YES	0	137	1	0.06	0.0521	0.0261	RP11-59N23.3->chr12:21815247-21912966:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH1838_LUNG	0.06	1	0.0782	TRUE	0	0	0	3	0	TRUE	ACH-000733
NCIH1838_LUNG	MT-ATP6--MT-CO2	6	2	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	123	12	0.06	0.4	0.0521	0.0174	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1838_LUNG	0.06	0.4	0.0695	FALSE	59	21	0	114	0	FALSE	ACH-000733
NCIH1838_LUNG	RP11-59N23.3--CMAS	6	2	RP11-59N23.3	1459	chr12:21815705:+	CMAS	6999	chr12:22208083:+	ONLY_REF_SPLICE	YES	7	137	0.53	0.06	0.0521	0.0174	RP11-59N23.3->chr12:21815247-21912966:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH1838_LUNG	0.06	0.53	0.0695	TRUE	0	14	5	5	10	TRUE	ACH-000733
NCIH1838_LUNG	SAP30BP--PPIA	6	2	SAP30BP	3558	chr17:73667943:+	PPIA	21112	chr7:44838846:+	ONLY_REF_SPLICE	YES	247	1539	0.03	0.01	0.0521	0.0174	SAP30BP->SAP30_binding_protein,chr17:73663196-73704142:+,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	NCIH1838_LUNG	0.01	0.03	0.0695	FALSE	0	0	0	1	0	FALSE	ACH-000733
NCIH1838_LUNG	KANK1--TOM1	6	1	KANK1	6781	chr9:504754:+	TOM1	38368	chr22:35723264:+	ONLY_REF_SPLICE	YES	0	40	1	0.15	0.0521	0.0087	KANK1->KN_motif_and_ankyrin_repeat_domains_1,chr9:470291-746105:+,TOM1->chr22:35695268-35743985:+,target_of_myb1_membrane_trafficking_protein	NCIH1838_LUNG	0.15	1	0.0608	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ATP8	5	5	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	10539	0	0	1	0.0434	0.0434	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1838_LUNG	0	1	0.0868	FALSE	231	217	16	283	0	FALSE	ACH-000733
NCIH1838_LUNG	JSRP1--RPS28	6	0	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH1838_LUNG	1	1	0.0521	TRUE	0	1	0	84	1	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	6	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	1	1	0.0521	FALSE	344	821	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-CO1--MT-RNR2	3	11	MT-CO1	1617	chrM:6520:+	MT-RNR2	5563	chrM:1691:+	INCL_NON_REF_SPLICE	YES	14986	0	0	1	0.0261	0.0955	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1838_LUNG	0	1	0.1216	FALSE	44	51	6	21	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-TA--MT-TC	3	11	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0.0955	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1838_LUNG	1	1	0.1216	FALSE	462	80	0	856	0	FALSE	ACH-000733
NCIH1838_LUNG	RNF121--NARS2	1	19	RNF121	4742	chr11:71673335:+	NARS2	31288	chr11:78152163:-	ONLY_REF_SPLICE	YES	82	59	0.2	0.25	0.0087	0.165	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	NCIH1838_LUNG	0.2	0.25	0.1737	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	KANK1--UBAP2	5	2	KANK1	8933	chr9:540667:+	UBAP2	40824	chr9:33986835:-	ONLY_REF_SPLICE	YES	2	29	0.78	0.19	0.0434	0.0174	KANK1->KN_motif_and_ankyrin_repeat_domains_1,chr9:470291-746105:+,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	NCIH1838_LUNG	0.19	0.78	0.0608	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	MT-ATP6--MT-CO2	5	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	43	3	0.14	0.7	0.0434	0.0174	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1838_LUNG	0.14	0.7	0.0608	FALSE	59	21	0	114	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ATP6--MT-CO2	3	10	MT-ATP6	1408	chrM:8934:+	MT-CO2	4720	chrM:7624:+	INCL_NON_REF_SPLICE	NO	108	0	0.11	1	0.0261	0.0869	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1838_LUNG	0.11	1	0.113	FALSE	59	21	0	114	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-CO1--MT-RNR2	3	10	MT-CO1	1646	chrM:6549:+	MT-RNR2	6130	chrM:2258:+	INCL_NON_REF_SPLICE	YES	17803	10835	0	0	0.0261	0.0869	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1838_LUNG	0	0	0.113	FALSE	44	51	6	21	0	FALSE	ACH-000733
NCIH1838_LUNG	TPPP--BRD9	5	2	TPPP	1118	chr5:693393:-	BRD9	23088	chr5:880004:-	ONLY_REF_SPLICE	YES	0	195	1	0.03	0.0434	0.0174	GTEx_FI:{Colon=[count:8=pct:4.2],Blood_Vessel=[count:8=pct:2.2],Esophagus=[count:8=pct:2.0],Brain=[count:3=pct:0.5],Lung=[count:3=pct:1.8],Uterus=[count:2=pct:4.7],Adipose_Tissue=[count:2=pct:0.7],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Muscle=[count:1=pct:0.4],Skin=[count:1=pct:0.3],Thyroid=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Adipose_-_Subcutaneous=1},TPPP->chr5:660883-693510:-,tubulin_polymerization_promoting_protein,BRD9->bromodomain_containing_9,chr5:850406-892939:-	NCIH1838_LUNG	0.03	1	0.0608	TRUE	29	26	4	4	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ATP8	5	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	6922	2	0	0.75	0.0434	0.0087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1838_LUNG	0	0.75	0.0521	FALSE	230	193	14	283	0	FALSE	ACH-000733
NCIH1838_LUNG	RNF121--NARS2	2	13	RNF121	3604	chr11:71671937:+	NARS2	32315	chr11:78147860:-	ONLY_REF_SPLICE	YES	80	49	0.16	0.23	0.0174	0.1129	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	NCIH1838_LUNG	0.16	0.23	0.1303	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	KANK1--UBAP2	5	0	KANK1	6781	chr9:504754:+	UBAP2	40824	chr9:33986835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0434	0	KANK1->KN_motif_and_ankyrin_repeat_domains_1,chr9:470291-746105:+,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	NCIH1838_LUNG	1	1	0.0434	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0434	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	1	1	0.0434	FALSE	344	821	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0434	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1838_LUNG	1	1	0.0434	FALSE	499	1288	110	792	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-TA--MT-TC	3	8	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0.0695	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1838_LUNG	1	1	0.0956	FALSE	462	80	0	856	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-CO3--MT-ATP6	4	3	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	8	1	0.47	0.88	0.0347	0.0261	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1838_LUNG	0.47	0.88	0.0608	FALSE	189	492	56	216	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-CO3--MT-ATP6	4	3	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	14	1	0.33	0.88	0.0347	0.0261	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1838_LUNG	0.33	0.88	0.0608	FALSE	189	492	56	216	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-TA--MT-TC	3	7	MT-TA	1063	chrM:5593:-	MT-TC	4102	chrM:5794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0.0608	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1838_LUNG	1	1	0.0869	FALSE	462	80	0	856	0	FALSE	ACH-000733
NCIH1838_LUNG	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0.0261	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1838_LUNG	1	1	0.0608	FALSE	467	2173	244	435	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-TL1--MT-RNR2	4	2	MT-TL1	1104	chrM:3333:+	MT-RNR2	5603	chrM:3198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0.0174	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1838_LUNG	1	1	0.0521	FALSE	7	521	16	32	0	FALSE	ACH-000733
NCIH1838_LUNG	AKAP6--NPAS3	4	1	AKAP6	16800	chr14:33069998:+	NPAS3	40321	chr14:33525111:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0347	0.0087	AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+,NPAS3->chr14:33404139-34273382:+,neuronal_PAS_domain_protein_3	NCIH1838_LUNG	0.83	1	0.0434	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	MT-ATP6--MT-CO2	4	1	MT-ATP6	1098	chrM:8624:+	MT-CO2	4969	chrM:7873:+	INCL_NON_REF_SPLICE	NO	35	10	0.12	0.33	0.0347	0.0087	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1838_LUNG	0.12	0.33	0.0434	FALSE	59	21	0	114	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	10964	0	0	1	0.0261	0.0434	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1838_LUNG	0	1	0.0695	FALSE	231	217	16	283	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	4	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0347	0.0087	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	0.62	1	0.0434	FALSE	344	821	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	RNF121--NARS2	1	13	RNF121	4742	chr11:71673335:+	NARS2	32315	chr11:78147860:-	ONLY_REF_SPLICE	YES	82	49	0.15	0.22	0.0087	0.1129	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	NCIH1838_LUNG	0.15	0.22	0.1216	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	SPIDR--DDX11L2	3	5	SPIDR	12780	chr8:48309186:+	DDX11L2	40010	chr2:114359006:-	INCL_NON_REF_SPLICE	YES	27	0	0.23	1	0.0261	0.0434	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	NCIH1838_LUNG	0.23	1	0.0695	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	1	1	0.0347	FALSE	344	821	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1002	chrM:10761:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	1	1	0.0347	FALSE	344	821	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1838_LUNG	1	1	0.0347	FALSE	499	1288	110	792	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ATP6--MT-CO2	3	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	40	3	0.13	0.67	0.0261	0.0261	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1838_LUNG	0.13	0.67	0.0522	FALSE	59	21	0	114	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ATP6--MT-CO2	3	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	40	3	0.13	0.67	0.0261	0.0261	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1838_LUNG	0.13	0.67	0.0522	FALSE	59	21	0	114	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0.0261	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1838_LUNG	1	1	0.0522	FALSE	462	80	0	856	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-CO1--MT-RNR2	3	2	MT-CO1	1316	chrM:6219:+	MT-RNR2	6132	chrM:2260:+	INCL_NON_REF_SPLICE	YES	16447	10810	0	0	0.0261	0.0174	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1838_LUNG	0	0	0.0435	FALSE	44	51	6	21	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1503	chrM:11262:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	9918	0	0	1	0.0261	0.0174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1838_LUNG	0	1	0.0435	FALSE	231	217	16	283	0	FALSE	ACH-000733
NCIH1838_LUNG	HSP90AB1--MT-RNR2	3	1	HSP90AB1	4415	chr6:44218238:+	MT-RNR2	11368	chrM:2241:+	INCL_NON_REF_SPLICE	NO	2136	10799	0	0	0.0261	0.0087	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1838_LUNG	0	0	0.0348	FALSE	0	0	0	11	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ATP8--MT-CO1	3	1	MT-ATP8	1270	chrM:8635:+	MT-CO1	4698	chrM:6394:+	INCL_NON_REF_SPLICE	YES	0	15676	1	0	0.0261	0.0087	LOCAL_REARRANGEMENT:+:[921],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1838_LUNG	0	1	0.0348	FALSE	3	1	0	9	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND5--MT-ND6	3	1	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	1933	1	0	0.0261	0.0087	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH1838_LUNG	0	1	0.0348	FALSE	26	124	4	93	0	FALSE	ACH-000733
NCIH1838_LUNG	NRIP1--AF127936.7	3	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	35	9	0.1	0.31	0.0261	0.0087	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1838_LUNG	0.1	0.31	0.0348	FALSE	8	57	1	47	0	FALSE	ACH-000733
NCIH1838_LUNG	HNRNPA2B1--LMNA	3	0	HNRNPA2B1	5961	chr7:26236189:-	LMNA	30340	chr1:156106180:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,LMNA->chr1:156052364-156109880:+,lamin_A/C	NCIH1838_LUNG	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1838_LUNG	1	1	0.0261	FALSE	189	492	56	216	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1838_LUNG	1	1	0.0261	FALSE	230	193	14	283	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1017	chrM:10776:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1838_LUNG	1	1	0.0261	FALSE	230	190	14	283	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1390	chrM:11149:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1838_LUNG	1	1	0.0261	FALSE	231	217	16	283	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1838_LUNG	1	1	0.0261	FALSE	344	821	44	306	0	FALSE	ACH-000733
NCIH1838_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1838_LUNG	1	1	0.0261	FALSE	499	1288	110	792	0	FALSE	ACH-000733
NCIH1838_LUNG	RP11-123O10.4--GRIP1	3	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1838_LUNG	1	1	0.0261	FALSE	93	270	15	244	0	FALSE	ACH-000733
NCIH1838_LUNG	SPIDR--DDX11L2	3	0	SPIDR	7740	chr8:48206619:+	DDX11L2	40613	chr2:114358403:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	NCIH1838_LUNG	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	NARS2--FCHSD2	1	6	NARS2	6339	chr11:78277178:-	FCHSD2	23219	chr11:72794785:-	ONLY_REF_SPLICE	YES	46	13	0.13	0.35	0.0087	0.0521	NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	NCIH1838_LUNG	0.13	0.35	0.0608	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	RP11-123O10.4--GRIP1	2	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0.0174	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1838_LUNG	1	1	0.0348	FALSE	9	21	5	22	0	FALSE	ACH-000733
NCIH1838_LUNG	AKAP6--NPAS3	2	1	AKAP6	18902	chr14:33097304:+	NPAS3	40321	chr14:33525111:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0174	0.0087	AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+,NPAS3->chr14:33404139-34273382:+,neuronal_PAS_domain_protein_3	NCIH1838_LUNG	0.75	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	ADORA2B--UBB	2	0	ADORA2B	1667	chr17:15848897:+	UBB	8656	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	ADORA2B->adenosine_A2b_receptor,chr17:15848231-15879060:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	NCIH1838_LUNG	1	1	0.0174	TRUE	0	1	0	5	1	TRUE	ACH-000733
NCIH1838_LUNG	AP000769.1--INTS4	2	0	AP000769.1	1325	chr11:65223052:+	INTS4	22341	chr11:77633517:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	AP000769.1->chr11:65222728-65234028:+,INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4	NCIH1838_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	EIF4G1--KDM2A	2	0	EIF4G1	9078	chr3:184040742:+	KDM2A	47900	chr11:67021674:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	EIF4G1->Oncogene{Bushman},chr3:184032283-184053146:+,eukaryotic_translation_initiation_factor_4_gamma_1,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	NCIH1838_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	LIN52--SAMD4A	1	4	LIN52	3937	chr14:74562688:+	SAMD4A	16865	chr14:55135510:+	ONLY_REF_SPLICE	YES	32	120	0.14	0.04	0.0087	0.0347	LIN52->chr14:74551499-74667936:+,lin-52_DREAM_MuvB_core_complex_component,SAMD4A->chr14:55033815-55260033:+,sterile_alpha_motif_domain_containing_4A	NCIH1838_LUNG	0.04	0.14	0.0434	TRUE	0	0	0	1	0	FALSE	ACH-000733
NCIH1838_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1838_LUNG	1	1	0.0174	FALSE	25	145	6	90	0	FALSE	ACH-000733
NCIH1838_LUNG	PNPLA8--CBX1	2	0	PNPLA8	4961	chr7:108161920:-	CBX1	26117	chr17:46154403:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	PNPLA8->chr7:108110866-108210110:-,patatin_like_phospholipase_domain_containing_8,CBX1->chr17:46147414-46178883:-,chromobox_1	NCIH1838_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	PSPH--PSMG3	2	0	PSPH	1467	chr7:56118831:-	PSMG3	16874	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	NCIH1838_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000733
NCIH1838_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0087	0.0261	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1838_LUNG	1	1	0.0348	FALSE	192	492	57	212	0	FALSE	ACH-000733
NCIH1838_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.8	1	0.0087	0.0261	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1838_LUNG	0.8	1	0.0348	FALSE	407	2205	196	549	0	FALSE	ACH-000733
NCIH1838_LUNG	FRS2--RAB3IP	1	1	FRS2	6634	chr12:69925836:+	RAB3IP	25899	chr12:70149164:+	ONLY_REF_SPLICE	YES	13	90	0.13	0.02	0.0087	0.0087	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	NCIH1838_LUNG	0.02	0.13	0.0174	TRUE	0	1	0	1	1	FALSE	ACH-000733
NCIH1838_LUNG	HIF1A-AS2--PHF14	1	1	HIF1A-AS2	1213	chr14:62217603:-	PHF14	31049	chr7:11150977:+	ONLY_REF_SPLICE	NO	7	94	0.22	0.02	0.0087	0.0087	HIF1A-AS2->HIF1A_antisense_RNA_2,chr14:62182276-62217815:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1838_LUNG	0.02	0.22	0.0174	TRUE	0	0	0	1	0	FALSE	ACH-000733
NCIH1838_LUNG	LAMTOR1--P2RY2	1	1	LAMTOR1	3772	chr11:71809827:-	P2RY2	12511	chr11:72939026:+	ONLY_REF_SPLICE	YES	441	30	0	0.06	0.0087	0.0087	LAMTOR1->chr11:71796941-71814433:-,late_endosomal/lysosomal_adaptor,_MAPK_and_MTOR_activator_1,P2RY2->chr11:72929343-72947397:+,purinergic_receptor_P2Y2	NCIH1838_LUNG	0	0.06	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000733
NCIH1838_LUNG	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	20	9	0.09	0.18	0.0087	0.0087	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1838_LUNG	0.09	0.18	0.0174	FALSE	7	44	2	41	0	FALSE	ACH-000733
NCIH1838_LUNG	PTMA--GNAS	1	1	PTMA	2857	chr2:232573461:+	GNAS	26455	chr20:57470667:+	ONLY_REF_SPLICE	YES	2960	740	0	0	0.0087	0.0087	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1838_LUNG	0	0	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000733
NCIH1838_LUNG	RP11-120D5.1--MID1	1	1	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	0	56	1	0.03	0.0087	0.0087	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1838_LUNG	0.03	1	0.0174	FALSE	2	31	0	60	0	FALSE	ACH-000733
NCIH1838_LUNG	RP11-1379J22.5--RUFY1	1	1	RP11-1379J22.5	1720	chr5:179085482:+	RUFY1	26024	chr5:179028893:+	ONLY_REF_SPLICE	YES	2	81	0.5	0.02	0.0087	0.0087	LOCAL_REARRANGEMENT:+:[47736],RP11-1379J22.5->chr5:179084763-179091433:+,RUFY1->RUN_and_FYVE_domain_containing_1,chr5:178977559-179037027:+	NCIH1838_LUNG	0.02	0.5	0.0174	TRUE	0	0	0	1	0	FALSE	ACH-000733
NCIH1838_LUNG	SF1--FUS	1	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	164	386	0.01	0.01	0.0087	0.0087	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH1838_LUNG	0.01	0.01	0.0174	FALSE	5	20	0	32	0	FALSE	ACH-000733
NCIH1838_LUNG	TMCO3--LAMP1	1	1	TMCO3	1279	chr13:114145588:+	LAMP1	28668	chr13:113975719:+	ONLY_REF_SPLICE	YES	276	1422	0.01	0	0.0087	0.0087	TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1	NCIH1838_LUNG	0	0.01	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000733
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	123	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0262	0.1168	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.143	TRUE	508	994	45	981	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	80	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6674	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6674	TRUE	0	0	0	518	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	79	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	62	2	0.57	0.98	0.6591	0.0167	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	0.98	0.6758	TRUE	519	3926	326	965	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZKSCAN1--RSBN1L	42	0	ZKSCAN1	14374	chr7:99636870:+	RSBN1L	33099	chr7:77411238:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3504	0	ZKSCAN1->chr7:99613204-99639312:+,zinc_finger_with_KRAB_and_SCAN_domains_1,RSBN1L->chr7:77325760-77412339:+,round_spermatid_basic_protein_1_like	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3504	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	28	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2336	0.0083	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2419	FALSE	462	80	0	856	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	25	5	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	27457	chr9:22046750:+	ONLY_REF_SPLICE	YES	0	16	1	0.65	0.2086	0.0417	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	0.2503	FALSE	0	3	0	6	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	20	20	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	23434	chr9:21995047:+	ONLY_REF_SPLICE	YES	0	2	1	0.95	0.1669	0.1669	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.3338	FALSE	0	0	0	3	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1335	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1335	FALSE	499	1288	110	792	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	9	21	AC104820.2	16783	chr2:182227645:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	18	214	0.62	0.12	0.0751	0.1752	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.62	0.2503	FALSE	0	0	0	16	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	14	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1168	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1168	TRUE	0	0	0	518	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	13	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1085	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1085	TRUE	1	39	0	134	39	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	9	10	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	18	203	0.51	0.09	0.0751	0.0834	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.51	0.1585	FALSE	0	0	0	19	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0751	0.0417	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1168	FALSE	499	1288	110	792	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-565E6.1--HYDIN	10	0	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0834	0	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0834	TRUE	456	1387	91	133	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	9	3	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	9	203	0.57	0.06	0.0751	0.025	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.57	0.1001	FALSE	0	1	0	18	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	9	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0751	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0751	FALSE	515	4851	409	746	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	8	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0667	0.0083	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.075	FALSE	16	356	14	466	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	8	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0667	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0667	FALSE	416	2512	207	587	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0584	0.0083	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0667	FALSE	462	80	0	856	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	5	5	AC104820.2	6553	chr2:182091262:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	9	214	0.53	0.04	0.0417	0.0417	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.53	0.0834	FALSE	0	0	0	11	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	4	8	AC104820.2	8902	chr2:182127704:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	15	214	0.44	0.05	0.0334	0.0667	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.44	0.1001	FALSE	0	0	0	3	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	6	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0501	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0501	FALSE	272	151	14	158	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0417	0.0167	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0584	FALSE	499	1288	110	792	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ND4L	5	1	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	648	0	0.01	1	0.0417	0.0083	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.05	FALSE	1	1	0	107	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4L	5	0	MT-ND5	1609	chrM:12945:+	MT-ND4L	6089	chrM:10746:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0417	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1571],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0417	FALSE	1	1	0	2	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0417	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0417	FALSE	499	1288	110	792	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0417	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0417	TRUE	22	156	2	142	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	5	0	SPON2	4412	chr4:1195057:-	CTBP1	30074	chr4:1222131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0417	TRUE	1	0	0	4	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	5	0	SPON2	4412	chr4:1195057:-	CTBP1	23049	chr4:1232125:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0417	TRUE	2	0	0	8	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WTAPP1--RUVBL1	5	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0417	TRUE	9	252	6	66	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--GNAS	4	1	SF1	10800	chr11:64534504:-	GNAS	29818	chr20:57466766:+	INCL_NON_REF_SPLICE	NO	194	3	0.03	0.62	0.0334	0.0083	GTEx_FI:{Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=3,Pituitary=3,Minor_Salivary_Gland=1,Brain_-_Hypothalamus=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.62	0.0417	TRUE	0	0	0	2	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	4	1	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0.0083	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0417	TRUE	37	101	7	40	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	3	0	AC104820.2	4356	chr2:181988707:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.025	FALSE	0	0	0	3	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FARS2--RP3-380B8.4	3	0	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.025	FALSE	27	82	4	18	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	3	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.025	TRUE	1	39	0	134	39	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	3	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.025	FALSE	351	233	23	137	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.025	FALSE	462	80	0	856	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.025	FALSE	462	80	0	856	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	3	0	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.025	TRUE	4	3	0	21	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF7--CTD-2410N18.5	3	0	TCF7	2323	chr5:133451724:+	CTD-2410N18.5	20410	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_INVERSION:+:-:[15305],TCF7->chr5:133450402-133487556:+,transcription_factor_7_(T-cell_specific,_HMG-box),CTD-2410N18.5->chr5:133502861-133561762:-	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.025	TRUE	0	2	0	4	1	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	1	5	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	25710	chr9:22032673:+	ONLY_REF_SPLICE	YES	0	6	1	0.5	0.0083	0.0417	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.05	FALSE	0	0	0	2	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0167	0.0083	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.025	FALSE	0	48	1	163	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--FUS	2	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	219	550	0.01	0.01	0.0167	0.0083	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.025	FALSE	5	20	0	32	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	4	AC104820.2	7753	chr2:182103177:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	16	203	0.24	0.02	0.0083	0.0334	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.24	0.0417	FALSE	0	0	0	3	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	4	AC104820.2	15551	chr2:182219070:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	NO	12	203	0.29	0.02	0.0083	0.0334	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.29	0.0417	FALSE	0	0	0	2	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	4	AC104820.2	8902	chr2:182127704:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	15	203	0.25	0.02	0.0083	0.0334	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.25	0.0417	FALSE	0	0	0	11	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF4G2--ABCB10	2	0	EIF4G2	7081	chr11:10824577:-	ABCB10	18823	chr1:229683448:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2,ABCB10->ATP_binding_cassette_subfamily_B_member_10,Oncogene{Bushman},chr1:229652329-229694442:-	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FZR1--MAP2K2	2	0	FZR1	1202	chr19:3506472:+	MAP2K2	19349	chr19:4110653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	FZR1->chr19:3506271-3538328:+,fizzy/cell_division_cycle_20_related_1,MAP2K2->ArcherDX_panel,FoundationOne_panel,chr19:4090319-4124126:-,mitogen-activated_protein_kinase_kinase_2	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAX--FUT8	2	0	MAX	3258	chr14:65560426:-	FUT8	17766	chr14:65922339:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	MAX->MYC_associated_factor_X,Oncogene{Bushman},chr14:65472892-65569413:-,FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTBP2--SEP15	2	0	PTBP2	5162	chr1:97217056:+	SEP15	32155	chr1:87346408:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,SEP15->chr1:87328132-87380107:-	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--PAIP2	2	0	RCC1	2920	chr1:28835417:+	PAIP2	24030	chr5:138704422:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF126--BSG	2	0	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	2	0	12	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--GNAS	2	0	SF1	3289	chr11:64543970:-	GNAS	32063	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_FI:{Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=3,Pituitary=3,Minor_Salivary_Gland=1,Brain_-_Hypothalamus=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	4	13	1	15	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNRNP35--RILPL2	2	0	SNRNP35	1576	chr12:123942763:+	RILPL2	14468	chr12:123915206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Left_Ventricle=1},LOCAL_INVERSION:+:-:[20924],SNRNP35->chr12:123942188-123957701:+,small_nuclear_ribonucleoprotein_U11/U12_subunit_35,RILPL2->Rab_interacting_lysosomal_protein_like_2,chr12:123899936-123921264:-	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	62	24	1	171	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTN-AS1--FAM168B	2	0	TTN-AS1	8946	chr2:179396305:+	FAM168B	68270	chr2:131813268:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	TTN-AS1->TTN_antisense_RNA_1,chr2:179385910-179639402:+,FAM168B->chr2:131805449-131851033:-,family_with_sequence_similarity_168_member_B	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--CTBP1	2	0	UVSSA	7499	chr4:1349033:+	CTBP1	24040	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	23	5	0	14	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VPS13B--SRSF11	2	0	VPS13B	18031	chr8:100205285:+	SRSF11	81650	chr1:70687298:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast),SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR37--GET4	2	0	WDR37	2669	chr10:1102908:+	GET4	29112	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WIPF1--ATF2	2	0	WIPF1	1143	chr2:175547502:-	ATF2	42872	chr2:175962321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	WIPF1->WAS/WASL_interacting_protein_family_member_1,chr2:175424300-175547644:-,ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	1	2	NOC4L	5448	chr12:132633440:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	24	30	0.11	0.09	0.0083	0.0167	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.11	0.025	TRUE	4	9	0	12	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP4B1--CEPT1	1	1	AP4B1	1597	chr1:114447227:-	CEPT1	16759	chr1:111690264:+	ONLY_REF_SPLICE	YES	30	1	0.06	0.67	0.0083	0.0083	AP4B1->adaptor_related_protein_complex_4_beta_1_subunit,chr1:114437370-114447823:-,CEPT1->choline/ethanolamine_phosphotransferase_1,chr1:111682249-111727724:+	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.67	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IP6K2--SSR4	1	1	IP6K2	13175	chr3:48732523:-	SSR4	25117	chrX:153061889:+	ONLY_REF_SPLICE	YES	164	108	0.01	0.02	0.0083	0.0083	IP6K2->chr3:48725436-48777786:-,inositol_hexakisphosphate_kinase_2,SSR4->chrX:153058971-153063960:+,signal_sequence_receptor,_delta	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MACF1--PABPC4	1	1	MACF1	117644	chr1:39945681:+	PABPC4	128512	chr1:40037021:-	ONLY_REF_SPLICE	YES	188	294	0.01	0.01	0.0083	0.0083	GTEx_v2:{count=5;pct=0.06%;dist=Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Testis=1,Colon_-_Transverse=1},LOCAL_INVERSION:+:-:[73639],MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,PABPC4->chr1:40026488-40042462:-,poly(A)_binding_protein_cytoplasmic_4	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	1	1	NOC4L	2218	chr12:132630210:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	35	30	0.05	0.06	0.0083	0.0083	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.06	0.0166	TRUE	0	1	0	10	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	1	1	NOC4L	5448	chr12:132633440:+	FBRSL1	21444	chr12:133124589:+	ONLY_REF_SPLICE	YES	24	36	0.08	0.05	0.0083	0.0083	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.08	0.0166	TRUE	2	2	0	3	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0083	0.0083	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0166	FALSE	0	23	1	67	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAG3L2--XPO6	1	1	STAG3L2	5861	chr7:74299455:-	XPO6	18979	chr16:28181230:-	ONLY_REF_SPLICE	YES	68	74	0.03	0.03	0.0083	0.0083	STAG3L2->chr7:74112305-74306731:-,stromal_antigen_3-like_2_(pseudogene),XPO6->chr16:28109300-28223241:-,exportin_6	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.03	0.0166	TRUE	0	0	0	1	0	FALSE	ACH-000372
P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF736--FAM120B	1	1	ZNF736	8361	chr7:63797360:+	FAM120B	32723	chr6:170704575:+	ONLY_REF_SPLICE	YES	30	38	0.06	0.05	0.0083	0.0083	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Lymphoid=1,Lung=1},ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.06	0.0166	TRUE	0	3	0	3	3	TRUE	ACH-000372
SNU308_BILIARY_TRACT	BTBD8--RP11-148B18.3	133	64	BTBD8	2614	chr1:92554452:+	RP11-148B18.3	13413	chr1:94798865:+	INCL_NON_REF_SPLICE	YES	12	0	0.94	1	1.3228	0.6365	BTBD8->BTB_domain_containing_8,chr1:92545862-92613393:+,RP11-148B18.3->chr1:94798823-94800404:+	SNU308_BILIARY_TRACT	0.94	1	1.9593	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--BCAR4	130	2	LITAF	6541	chr16:11680742:-	BCAR4	24573	chr16:11914154:-	ONLY_REF_SPLICE	YES	11	25	0.92	0.84	1.293	0.0199	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU308_BILIARY_TRACT	0.84	0.92	1.3129	TRUE	0	10	0	1	10	TRUE	ACH-000141
SNU308_BILIARY_TRACT	TIMM23B--LINC00843	113	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1239	0.2487	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU308_BILIARY_TRACT	1	1	1.3726	TRUE	508	994	45	981	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RNASE10--PTGR1	68	27	RNASE10	1483	chr14:20974178:+	PTGR1	16126	chr9:114337122:-	ONLY_REF_SPLICE	YES	0	666	1	0.12	0.6763	0.2685	GTEx_FI:{Liver=[count:3=pct:2.5],Lung=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Small_Intestine=[count:1=pct:1.8],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Visceral_(Omentum)=2,Lung=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1},RNASE10->Oncogene{Bushman},chr14:20973696-20979328:+,ribonuclease_A_family_member_10_(inactive),PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	SNU308_BILIARY_TRACT	0.12	1	0.9448	TRUE	9	1	0	6	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MT-TA--MT-TN	70	1	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6962	0.0099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU308_BILIARY_TRACT	1	1	0.7061	FALSE	369	2501	205	193	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	TIMM23--RP11-464F9.1	70	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6962	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU308_BILIARY_TRACT	1	1	0.6962	TRUE	519	3926	326	965	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	BTBD8--RP11-148B18.3	60	34	BTBD8	1416	chr1:92546277:+	RP11-148B18.3	13413	chr1:94798865:+	INCL_NON_REF_SPLICE	YES	75	0	0.56	1	0.5968	0.3382	BTBD8->BTB_domain_containing_8,chr1:92545862-92613393:+,RP11-148B18.3->chr1:94798823-94800404:+	SNU308_BILIARY_TRACT	0.56	1	0.935	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--ZC3H7A	50	0	LITAF	6541	chr16:11680742:-	ZC3H7A	23409	chr16:11876244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4973	0	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	SNU308_BILIARY_TRACT	1	1	0.4973	TRUE	0	3	0	1	3	TRUE	ACH-000141
SNU308_BILIARY_TRACT	MT-TA--MT-TC	37	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.368	0.0298	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU308_BILIARY_TRACT	1	1	0.3978	FALSE	462	80	0	856	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-6N13.1--CTD-2374C24.1	36	6	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	5	0	0.89	1	0.3581	0.0597	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SNU308_BILIARY_TRACT	0.89	1	0.4178	TRUE	5	4	0	46	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-123O10.4--GRIP1	30	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2984	0.0298	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU308_BILIARY_TRACT	1	1	0.3282	FALSE	416	2512	207	587	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-421L21.3--LPPR5	22	23	RP11-421L21.3	1184	chr1:101491617:+	LPPR5	15247	chr1:99470179:-	INCL_NON_REF_SPLICE	YES	89	1	0.34	0.98	0.2188	0.2288	RP11-421L21.3->chr1:101491434-101552821:+,LPPR5->chr1:99355806-99470588:-	SNU308_BILIARY_TRACT	0.34	0.98	0.4476	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	MT-TA--MT-TN	13	56	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1293	0.557	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU308_BILIARY_TRACT	1	1	0.6863	FALSE	369	2501	205	193	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP5-896L10.1--DPH5	20	13	RP5-896L10.1	1348	chr1:99470179:+	DPH5	8572	chr1:101491617:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1989	0.1293	RP5-896L10.1->chr1:99469832-99614408:+,DPH5->chr1:101455179-101491644:-,diphthamide_biosynthesis_5	SNU308_BILIARY_TRACT	0.97	1	0.3282	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	MT-CO3--MT-ATP6	6	60	MT-CO3	1263	chrM:9469:+	MT-ATP6	4730	chrM:8472:+	INCL_NON_REF_SPLICE	NO	4	0	0.94	1	0.0597	0.5968	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU308_BILIARY_TRACT	0.94	1	0.6565	FALSE	189	492	56	216	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	ZFYVE28--FAM193A	18	11	ZFYVE28	5035	chr4:2355660:-	FAM193A	34766	chr4:2648412:+	ONLY_REF_SPLICE	YES	22	11	0.57	0.72	0.179	0.1094	ZFYVE28->chr4:2271309-2420390:-,zinc_finger_FYVE-type_containing_28,FAM193A->chr4:2626988-2734292:+,family_with_sequence_similarity_193_member_A	SNU308_BILIARY_TRACT	0.57	0.72	0.2884	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	MT-TA--MT-TN	15	21	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1492	0.2089	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU308_BILIARY_TRACT	1	1	0.3581	FALSE	369	2501	205	193	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MT-TA--MT-TN	8	47	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0796	0.4675	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU308_BILIARY_TRACT	1	1	0.5471	FALSE	369	2501	205	193	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--BCAR4	18	4	LITAF	6541	chr16:11680742:-	BCAR4	23451	chr16:11915612:-	ONLY_REF_SPLICE	YES	11	0	0.67	1	0.179	0.0398	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU308_BILIARY_TRACT	0.67	1	0.2188	TRUE	0	8	0	1	8	TRUE	ACH-000141
SNU308_BILIARY_TRACT	MT-TA--MT-TN	10	33	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0995	0.3282	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU308_BILIARY_TRACT	1	1	0.4277	FALSE	369	2501	205	193	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MT-CO3--MT-ATP6	3	54	MT-CO3	1158	chrM:9364:+	MT-ATP6	5357	chrM:9099:+	INCL_NON_REF_SPLICE	YES	3	3	0.95	0.95	0.0298	0.5371	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU308_BILIARY_TRACT	0.95	0.95	0.5669	FALSE	189	492	56	216	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MT-CO3--MT-ATP6	4	48	MT-CO3	1119	chrM:9325:+	MT-ATP6	5351	chrM:9093:+	INCL_NON_REF_SPLICE	YES	1	3	0.98	0.95	0.0398	0.4774	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU308_BILIARY_TRACT	0.95	0.98	0.5172	FALSE	189	492	56	216	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MT-ND6--MT-TE	14	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1392	0.0199	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU308_BILIARY_TRACT	1	1	0.1591	FALSE	499	1288	110	792	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-114H23.1--RP11-114H23.2	10	11	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.0995	0.1094	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU308_BILIARY_TRACT	0.91	1	0.2089	FALSE	81	155	12	160	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MT-CO1--KRT6A	12	2	MT-CO1	1575	chrM:6478:+	KRT6A	5543	chr12:52887041:-	INCL_NON_REF_SPLICE	YES	14856	0	0	1	0.1194	0.0199	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	SNU308_BILIARY_TRACT	0	1	0.1393	FALSE	7	19	2	8	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MT-CO3--MT-ATP6	11	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.1094	0.0099	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU308_BILIARY_TRACT	0.86	1	0.1193	FALSE	189	492	56	216	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-58C22.1--CTD-2336H13.2	11	0	RP11-58C22.1	2618	chr16:76669520:+	CTD-2336H13.2	5594	chr16:76770214:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1094	0	GTEx_FI:{Testis=[count:22=pct:21.0]},RP11-58C22.1->chr16:76587314-76669520:+,CTD-2336H13.2->chr16:76770239-76962066:+	SNU308_BILIARY_TRACT	1	1	0.1094	TRUE	5	3	0	6	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	SAMD5--SASH1	11	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1094	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SNU308_BILIARY_TRACT	1	1	0.1094	TRUE	53	396	64	110	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MT-ND6--MT-TE	10	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0995	0.0199	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU308_BILIARY_TRACT	1	1	0.1194	FALSE	499	1288	110	792	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--BCAR4	10	0	LITAF	6276	chr16:11681007:-	BCAR4	24573	chr16:11914154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0995	0	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU308_BILIARY_TRACT	1	1	0.0995	TRUE	0	10	0	1	10	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-421L21.3--LPPR5	4	24	RP11-421L21.3	4825	chr1:101541272:+	LPPR5	15247	chr1:99470179:-	INCL_NON_REF_SPLICE	YES	66	1	0.3	0.97	0.0398	0.2387	RP11-421L21.3->chr1:101491434-101552821:+,LPPR5->chr1:99355806-99470588:-	SNU308_BILIARY_TRACT	0.3	0.97	0.2785	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	MT-CO1--KRT6A	9	3	MT-CO1	1591	chrM:6494:+	KRT6A	5561	chr12:52887023:-	INCL_NON_REF_SPLICE	YES	14268	0	0	1	0.0895	0.0298	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	SNU308_BILIARY_TRACT	0	1	0.1193	FALSE	7	19	2	8	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MT-ND6--MT-TE	7	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0696	0.1094	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU308_BILIARY_TRACT	0.95	1	0.179	FALSE	499	1288	110	792	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-476K15.1--CTD-2015H3.2	9	3	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0895	0.0298	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	SNU308_BILIARY_TRACT	1	1	0.1193	FALSE	0	46	0	73	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MT-ND6--MT-TE	4	21	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0.2089	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU308_BILIARY_TRACT	1	1	0.2487	FALSE	499	1288	110	792	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-120D5.1--MID1	8	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	2	1	0.87	0.0796	0.0497	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU308_BILIARY_TRACT	0.87	1	0.1293	FALSE	16	356	14	466	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MT-TA--MT-TN	4	20	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0.1989	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU308_BILIARY_TRACT	1	1	0.2387	FALSE	369	2501	205	193	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-96H19.1--RP11-446N19.1	8	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0796	0.0398	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU308_BILIARY_TRACT	0.92	1	0.1194	FALSE	515	4851	409	746	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	C15orf57--CBX3	7	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	27	35	0.31	0.26	0.0696	0.0497	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU308_BILIARY_TRACT	0.26	0.31	0.1193	TRUE	267	562	48	632	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--ZC3H7A	8	0	LITAF	6089	chr16:11681194:-	ZC3H7A	23409	chr16:11876244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0796	0	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	SNU308_BILIARY_TRACT	1	1	0.0796	TRUE	0	3	0	1	3	TRUE	ACH-000141
SNU308_BILIARY_TRACT	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0696	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU308_BILIARY_TRACT	1	1	0.0696	FALSE	462	80	0	856	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MT-ND6--MT-TE	3	14	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0298	0.1392	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU308_BILIARY_TRACT	0.94	1	0.169	FALSE	499	1288	110	792	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	C15orf57--CBX3	5	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	28	34	0.26	0.23	0.0497	0.0497	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU308_BILIARY_TRACT	0.23	0.26	0.0994	TRUE	267	562	48	632	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1547	0	0	1	0.0597	0.0099	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU308_BILIARY_TRACT	0	1	0.0696	FALSE	13	9	0	364	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MT-TA--MT-TN	6	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0597	0.0099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU308_BILIARY_TRACT	1	1	0.0696	FALSE	369	2501	205	193	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MT-CO3--MT-ATP6	3	11	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	2	0.93	0.88	0.0298	0.1094	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU308_BILIARY_TRACT	0.88	0.93	0.1392	FALSE	189	492	56	216	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-476K15.1--CTD-2015H3.2	5	3	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0.0298	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	SNU308_BILIARY_TRACT	1	1	0.0795	FALSE	0	46	0	73	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-108K3.1--GLDN	5	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0497	0.0199	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU308_BILIARY_TRACT	0.78	1	0.0696	FALSE	0	30	1	55	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.5	1	0.0497	0.0099	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU308_BILIARY_TRACT	0.5	1	0.0596	FALSE	292	1546	117	613	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-421L21.3--LPPR5	3	9	RP11-421L21.3	1184	chr1:101491617:+	LPPR5	17853	chr1:99422297:-	ONLY_REF_SPLICE	YES	89	8	0.12	0.6	0.0298	0.0895	RP11-421L21.3->chr1:101491434-101552821:+,LPPR5->chr1:99355806-99470588:-	SNU308_BILIARY_TRACT	0.12	0.6	0.1193	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	MT-ATP6--MT-CO1	5	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU308_BILIARY_TRACT	1	1	0.0497	FALSE	183	104	9	328	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	PCAT1--RP11-382A18.2	5	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	SNU308_BILIARY_TRACT	1	1	0.0497	TRUE	4	84	1	46	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-114H23.1--RP11-114H23.2	3	8	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0298	0.0796	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU308_BILIARY_TRACT	0.85	1	0.1094	FALSE	81	155	12	160	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-319G9.5--WWOX	4	2	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	26	1	0.19	0.0398	0.0199	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	SNU308_BILIARY_TRACT	0.19	1	0.0597	FALSE	154	425	28	76	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-6N13.1--CTD-2374C24.1	4	2	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0398	0.0199	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SNU308_BILIARY_TRACT	0.55	1	0.0597	TRUE	5	12	0	42	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MT-TA--MT-TC	4	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0398	0.0099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU308_BILIARY_TRACT	1	1	0.0497	FALSE	462	80	0	856	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-421L21.3--LPPR5	2	9	RP11-421L21.3	4825	chr1:101541272:+	LPPR5	17853	chr1:99422297:-	ONLY_REF_SPLICE	YES	66	8	0.14	0.58	0.0199	0.0895	RP11-421L21.3->chr1:101491434-101552821:+,LPPR5->chr1:99355806-99470588:-	SNU308_BILIARY_TRACT	0.14	0.58	0.1094	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--BCAR4	4	0	LITAF	6089	chr16:11681194:-	BCAR4	23451	chr16:11915612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0398	0	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU308_BILIARY_TRACT	1	1	0.0398	TRUE	0	8	0	1	8	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--ZC3H7A	4	0	LITAF	6276	chr16:11681007:-	ZC3H7A	23409	chr16:11876244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0398	0	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	SNU308_BILIARY_TRACT	1	1	0.0398	TRUE	0	3	0	1	3	TRUE	ACH-000141
SNU308_BILIARY_TRACT	MT-TA--MT-TN	4	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU308_BILIARY_TRACT	1	1	0.0398	FALSE	369	2501	205	193	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU308_BILIARY_TRACT	1	1	0.0398	FALSE	369	2501	205	193	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-123O10.4--GRIP1	4	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0398	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU308_BILIARY_TRACT	1	1	0.0398	FALSE	93	270	15	244	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	WTAPP1--RUVBL1	4	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0398	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	SNU308_BILIARY_TRACT	1	1	0.0398	TRUE	9	252	6	66	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-114H23.1--RP11-114H23.2	1	11	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	NO	1	0	0.92	1	0.0099	0.1094	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU308_BILIARY_TRACT	0.92	1	0.1193	FALSE	5	9	0	20	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	BTBD8--RP11-148B18.3	3	2	BTBD8	1166	chr1:92546027:+	RP11-148B18.3	13413	chr1:94798865:+	INCL_NON_REF_SPLICE	YES	16	0	0.24	1	0.0298	0.0199	BTBD8->BTB_domain_containing_8,chr1:92545862-92613393:+,RP11-148B18.3->chr1:94798823-94800404:+	SNU308_BILIARY_TRACT	0.24	1	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0.0199	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU308_BILIARY_TRACT	1	1	0.0497	FALSE	462	80	0	856	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	NRIP1--AF127936.7	2	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.29	1	0.0199	0.0597	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU308_BILIARY_TRACT	0.29	1	0.0796	FALSE	164	806	69	479	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-108K3.1--GLDN	3	2	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0.0199	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU308_BILIARY_TRACT	1	1	0.0497	FALSE	0	19	0	46	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MIR205HG--C9orf3	3	1	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	541	86	0.01	0.04	0.0298	0.0099	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SNU308_BILIARY_TRACT	0.01	0.04	0.0397	FALSE	86	303	14	25	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	MT-TA--MT-TN	3	1	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0.0099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU308_BILIARY_TRACT	1	1	0.0397	FALSE	369	2501	205	193	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-681L8.1--STPG2	3	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	22333	chr4:98480268:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0298	0.0099	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	SNU308_BILIARY_TRACT	0.57	1	0.0397	TRUE	0	6	0	7	6	TRUE	ACH-000141
SNU308_BILIARY_TRACT	CPD--XXbac-B476C20.17	3	0	CPD	3986	chr17:28712254:+	XXbac-B476C20.17	35683	chr22:18518526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0	CPD->carboxypeptidase_D,chr17:28705923-28797007:+,XXbac-B476C20.17->chr22:18512151-18520734:+	SNU308_BILIARY_TRACT	1	1	0.0298	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--BCAR4	2	4	LITAF	8424	chr16:11678046:-	BCAR4	24573	chr16:11914154:-	ONLY_REF_SPLICE	YES	37	25	0.14	0.19	0.0199	0.0398	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU308_BILIARY_TRACT	0.14	0.19	0.0597	TRUE	0	2	0	1	2	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--BCAR4	3	0	LITAF	6089	chr16:11681194:-	BCAR4	24573	chr16:11914154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU308_BILIARY_TRACT	1	1	0.0298	TRUE	0	10	0	1	10	TRUE	ACH-000141
SNU308_BILIARY_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU308_BILIARY_TRACT	1	1	0.0298	FALSE	499	1288	110	792	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	NRIP1--AF127936.7	2	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	19	0	0.21	1	0.0199	0.0298	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU308_BILIARY_TRACT	0.21	1	0.0497	FALSE	125	705	46	456	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0099	0.0696	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU308_BILIARY_TRACT	0.89	1	0.0795	FALSE	76	45	6	15	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-108K3.1--GLDN	2	2	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0.0199	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU308_BILIARY_TRACT	1	1	0.0398	FALSE	0	14	0	30	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-6N13.1--CTD-2374C24.1	2	2	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	YES	5	1	0.44	0.8	0.0199	0.0199	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SNU308_BILIARY_TRACT	0.44	0.8	0.0398	TRUE	1	1	0	17	1	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0099	0.0597	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU308_BILIARY_TRACT	0.88	1	0.0696	FALSE	275	511	55	178	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0099	0.0597	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU308_BILIARY_TRACT	0.88	1	0.0696	FALSE	407	2205	196	549	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0199	0.0099	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	SNU308_BILIARY_TRACT	0.5	1	0.0298	TRUE	0	2	0	5	2	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	1346	chr4:98554629:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0199	0.0099	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	SNU308_BILIARY_TRACT	0.75	1	0.0298	TRUE	0	1	0	3	1	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0199	0.0099	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	SNU308_BILIARY_TRACT	0.5	1	0.0298	TRUE	0	0	0	4	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RPSAP52--HMGA2	2	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	528	1	0.01	0.0199	0.0099	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SNU308_BILIARY_TRACT	0.01	1	0.0298	FALSE	0	59	0	125	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	BRI3BP--UBC	2	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU308_BILIARY_TRACT	1	1	0.0199	TRUE	5	99	5	34	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	C16orf74--HN1L	2	0	C16orf74	2250	chr16:85768796:-	HN1L	13704	chr16:1735440:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	C16orf74->chr16:85723690-85784735:-,chromosome_16_open_reading_frame_74,HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like	SNU308_BILIARY_TRACT	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	GPC1--ALDH3A1	2	0	GPC1	11372	chr2:241404163:+	ALDH3A1	26869	chr17:19641548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GPC1->chr2:241375088-241407493:+,glypican_1,ALDH3A1->aldehyde_dehydrogenase_3_family_member_A1,chr17:19641297-19652256:-	SNU308_BILIARY_TRACT	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--BCAR4	1	4	LITAF	7281	chr16:11680002:-	BCAR4	23451	chr16:11915612:-	ONLY_REF_SPLICE	YES	34	0	0.13	1	0.0099	0.0398	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU308_BILIARY_TRACT	0.13	1	0.0497	TRUE	0	7	0	1	7	TRUE	ACH-000141
SNU308_BILIARY_TRACT	NAPG--VAPA	2	0	NAPG	1254	chr18:10526155:+	VAPA	21938	chr18:9931807:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	NAPG->NSF_attachment_protein_gamma,chr18:10525902-10552758:+,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	SNU308_BILIARY_TRACT	1	1	0.0199	TRUE	0	1	0	2	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-421L21.3--ZNRF1	2	0	RP11-421L21.3	1184	chr1:101491617:+	ZNRF1	20606	chr16:75127470:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	RP11-421L21.3->chr1:101491434-101552821:+,ZNRF1->chr16:75032928-75144892:+,zinc_and_ring_finger_1,_E3_ubiquitin_protein_ligase	SNU308_BILIARY_TRACT	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-548L20.1--RP11-79E3.3	2	0	RP11-548L20.1	2265	chr4:34260709:-	RP11-79E3.3	12416	chr4:33949146:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	NEIGHBORS[81001],RP11-548L20.1->chr4:34122516-34271369:-,RP11-79E3.3->chr4:33777969-34041515:-	SNU308_BILIARY_TRACT	1	1	0.0199	FALSE	2	10	2	7	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	HIRA--CLTCL1	1	2	HIRA	2618	chr22:19418963:-	CLTCL1	66442	chr22:19168319:-	ONLY_REF_SPLICE	YES	15	10	0.17	0.23	0.0099	0.0199	NEIGHBORS[38982],HIRA->chr22:19318221-19435224:-,histone_cell_cycle_regulator,CLTCL1->Oncogene{Bushman},chr22:19166986-19279239:-,clathrin_heavy_chain_like_1	SNU308_BILIARY_TRACT	0.17	0.23	0.0298	FALSE	0	0	0	1	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	LITAF--BCAR4	1	2	LITAF	7281	chr16:11680002:-	BCAR4	24573	chr16:11914154:-	ONLY_REF_SPLICE	YES	34	25	0.08	0.11	0.0099	0.0199	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU308_BILIARY_TRACT	0.08	0.11	0.0298	TRUE	0	10	0	1	10	TRUE	ACH-000141
SNU308_BILIARY_TRACT	CPSF6--PGBD2	1	1	CPSF6	11046	chr12:69656342:+	PGBD2	23586	chr1:249211478:+	ONLY_REF_SPLICE	YES	153	16	0.01	0.11	0.0099	0.0099	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Adipose_-_Subcutaneous=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	SNU308_BILIARY_TRACT	0.01	0.11	0.0198	FALSE	0	7	0	6	2	FALSE	ACH-000141
SNU308_BILIARY_TRACT	GDAP1--RP11-758M4.1	1	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	62	1	0.03	0.67	0.0099	0.0099	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	SNU308_BILIARY_TRACT	0.03	0.67	0.0198	TRUE	7	28	0	43	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	LINC01036--LINC01037	1	1	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0099	0.0099	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SNU308_BILIARY_TRACT	1	1	0.0198	FALSE	0	26	0	50	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	LINC01036--LINC01037	1	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0099	0.0099	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SNU308_BILIARY_TRACT	1	1	0.0198	FALSE	0	24	0	62	0	FALSE	ACH-000141
SNU308_BILIARY_TRACT	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0099	0.0099	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	SNU308_BILIARY_TRACT	1	1	0.0198	TRUE	0	4	1	7	4	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0099	0.0099	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	SNU308_BILIARY_TRACT	1	1	0.0198	TRUE	0	10	0	4	10	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	1346	chr4:98554629:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0099	0.0099	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	SNU308_BILIARY_TRACT	0.67	1	0.0198	TRUE	0	6	0	6	6	TRUE	ACH-000141
SNU308_BILIARY_TRACT	RP11-6N13.1--CTD-2374C24.1	1	1	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	20885	chr5:104311586:-	ONLY_REF_SPLICE	YES	5	4	0.29	0.33	0.0099	0.0099	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SNU308_BILIARY_TRACT	0.29	0.33	0.0198	TRUE	1	2	0	8	1	FALSE	ACH-000141
TOV112D_OVARY	TIMM23B--LINC00843	109	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2239	0.2358	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TOV112D_OVARY	1	1	1.4597	TRUE	508	994	45	981	0	FALSE	ACH-000048
TOV112D_OVARY	MT-TA--MT-TN	101	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1341	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TOV112D_OVARY	1	1	1.1341	FALSE	369	2501	205	193	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-ND5	68	1	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1930	1	0.03	0.7636	0.0112	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	TOV112D_OVARY	0.03	1	0.7748	FALSE	101	855	57	72	0	FALSE	ACH-000048
TOV112D_OVARY	MT-TA--MT-TC	66	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7411	0.1011	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TOV112D_OVARY	1	1	0.8422	FALSE	462	80	0	856	0	FALSE	ACH-000048
TOV112D_OVARY	TIMM23--RP11-464F9.1	57	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	370	4	0.14	0.94	0.64	0.0112	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TOV112D_OVARY	0.14	0.94	0.6512	TRUE	519	3926	326	965	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-TE	44	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4941	0.0337	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TOV112D_OVARY	1	1	0.5278	FALSE	499	1288	110	792	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND4--MT-ND4L	3	152	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	30	0	0.84	1	0.0337	1.7068	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TOV112D_OVARY	0.84	1	1.7405	FALSE	344	826	44	306	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND4--MT-ND4L	4	143	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	16	0	0.9	1	0.0449	1.6057	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TOV112D_OVARY	0.9	1	1.6506	FALSE	344	826	44	306	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND4--MT-ND4L	12	103	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	6497	0	0.02	1	0.1347	1.1566	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TOV112D_OVARY	0.02	1	1.2913	FALSE	344	827	44	306	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND4--MT-ND4L	8	101	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	0	0.96	1	0.0898	1.1341	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TOV112D_OVARY	0.96	1	1.2239	FALSE	344	821	44	306	0	FALSE	ACH-000048
TOV112D_OVARY	MT-TA--MT-TN	18	55	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2021	0.6176	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TOV112D_OVARY	1	1	0.8197	FALSE	369	2501	205	193	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND4--MT-ND4L	3	105	MT-ND4	2198	chrM:11957:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	5738	0	0.02	1	0.0337	1.179	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TOV112D_OVARY	0.02	1	1.2127	FALSE	303	765	40	301	0	FALSE	ACH-000048
TOV112D_OVARY	HSP90AB1--MT-RNR2	28	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4506	0	0.01	1	0.3144	0.0337	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TOV112D_OVARY	0.01	1	0.3481	FALSE	13	9	0	364	0	FALSE	ACH-000048
TOV112D_OVARY	RP4-565E6.1--HYDIN	20	6	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	2	1	0.93	0.2246	0.0674	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	TOV112D_OVARY	0.93	1	0.292	TRUE	456	1387	91	133	0	FALSE	ACH-000048
TOV112D_OVARY	MT-TA--MT-TN	10	36	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1123	0.4042	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TOV112D_OVARY	1	1	0.5165	FALSE	369	2501	205	193	0	FALSE	ACH-000048
TOV112D_OVARY	HSP90AB1--MT-RNR2	18	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4479	0	0	1	0.2021	0.0225	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TOV112D_OVARY	0	1	0.2246	FALSE	13	9	0	364	0	FALSE	ACH-000048
TOV112D_OVARY	MT-TA--MT-TN	14	17	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1572	0.1909	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TOV112D_OVARY	1	1	0.3481	FALSE	369	2501	205	193	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND4--MT-ND4L	8	40	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	11217	0	0	1	0.0898	0.4492	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TOV112D_OVARY	0	1	0.539	FALSE	328	800	43	304	0	FALSE	ACH-000048
TOV112D_OVARY	MT-TA--MT-TN	6	48	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0.539	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TOV112D_OVARY	1	1	0.6064	FALSE	369	2501	205	193	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND4--MT-ND4L	4	45	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	5	0	0.91	1	0.0449	0.5053	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TOV112D_OVARY	0.91	1	0.5502	FALSE	344	821	44	306	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-TE	14	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1572	0.0561	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TOV112D_OVARY	1	1	0.2133	FALSE	499	1288	110	792	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-TE	11	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.1235	0.146	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TOV112D_OVARY	0.92	1	0.2695	FALSE	499	1288	110	792	0	FALSE	ACH-000048
TOV112D_OVARY	MT-TA--MT-TN	14	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1572	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TOV112D_OVARY	1	1	0.1572	FALSE	369	2501	205	193	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND4--MT-ND4L	4	38	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0449	0.4267	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TOV112D_OVARY	1	1	0.4716	FALSE	344	821	44	306	0	FALSE	ACH-000048
TOV112D_OVARY	MT-TA--MT-TC	11	9	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1235	0.1011	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TOV112D_OVARY	1	1	0.2246	FALSE	462	80	0	856	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-ND5	11	1	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	1887	1	0.01	0.1235	0.0112	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	TOV112D_OVARY	0.01	1	0.1347	FALSE	101	855	57	72	0	FALSE	ACH-000048
TOV112D_OVARY	MT-TL1--MT-RNR2	11	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1235	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TOV112D_OVARY	1	1	0.1235	FALSE	7	521	16	32	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-TE	6	13	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0.146	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TOV112D_OVARY	1	1	0.2134	FALSE	499	1288	110	792	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-TE	6	13	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0.146	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TOV112D_OVARY	1	1	0.2134	FALSE	499	1288	110	792	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-ND5	9	0	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1011	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	TOV112D_OVARY	1	1	0.1011	FALSE	101	855	57	72	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-TE	3	21	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0337	0.2358	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TOV112D_OVARY	0.92	1	0.2695	FALSE	499	1288	110	792	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-TE	4	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0449	0.1909	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TOV112D_OVARY	1	1	0.2358	FALSE	499	1288	110	792	0	FALSE	ACH-000048
TOV112D_OVARY	MT-TA--MT-TN	4	17	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0449	0.1909	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TOV112D_OVARY	1	1	0.2358	FALSE	369	2501	205	193	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-TE	3	20	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0337	0.2246	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TOV112D_OVARY	0.92	1	0.2583	FALSE	499	1288	110	792	0	FALSE	ACH-000048
TOV112D_OVARY	RP11-680G10.1--GSE1	7	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	62	1	0.15	0.0786	0.0449	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TOV112D_OVARY	0.15	1	0.1235	TRUE	458	1351	185	561	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-TE	3	19	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0337	0.2133	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TOV112D_OVARY	0.92	1	0.247	FALSE	499	1288	110	792	0	FALSE	ACH-000048
TOV112D_OVARY	RP11-680G10.1--GSE1	7	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	97	1	0.08	0.0786	0.0225	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TOV112D_OVARY	0.08	1	0.1011	TRUE	465	1949	224	605	0	FALSE	ACH-000048
TOV112D_OVARY	C15orf57--CBX3	6	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	29	17	0.26	0.37	0.0674	0.0449	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TOV112D_OVARY	0.26	0.37	0.1123	TRUE	267	562	48	632	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-ND5	7	0	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0786	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	TOV112D_OVARY	1	1	0.0786	FALSE	101	855	57	72	0	FALSE	ACH-000048
TOV112D_OVARY	MT-TA--MT-TN	7	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0786	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TOV112D_OVARY	1	1	0.0786	FALSE	369	2501	205	193	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-ND5	6	3	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	3445	1	0	0.0674	0.0337	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	TOV112D_OVARY	0	1	0.1011	FALSE	101	855	57	72	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND4--MT-ND4L	3	14	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	48	0	0.26	1	0.0337	0.1572	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TOV112D_OVARY	0.26	1	0.1909	FALSE	344	826	44	306	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND4--MT-ND4L	3	14	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	121	0	0.12	1	0.0337	0.1572	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TOV112D_OVARY	0.12	1	0.1909	FALSE	344	827	44	306	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-TE	3	13	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0337	0.146	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TOV112D_OVARY	0.89	1	0.1797	FALSE	499	1288	110	792	0	FALSE	ACH-000048
TOV112D_OVARY	LINC01036--LINC01037	6	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0674	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	TOV112D_OVARY	1	1	0.0674	FALSE	0	24	0	62	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-ND5	6	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	TOV112D_OVARY	1	1	0.0674	FALSE	101	855	57	72	0	FALSE	ACH-000048
TOV112D_OVARY	RP1-34H18.1--NAV3	5	3	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	44	1	0.15	0.0561	0.0337	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	TOV112D_OVARY	0.15	1	0.0898	TRUE	254	575	65	124	0	FALSE	ACH-000048
TOV112D_OVARY	CALM3--MT-ND4L	5	1	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	890	0	0.01	1	0.0561	0.0112	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TOV112D_OVARY	0.01	1	0.0673	FALSE	1	1	0	107	0	FALSE	ACH-000048
TOV112D_OVARY	MT-TA--MT-TC	3	9	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0.1011	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TOV112D_OVARY	1	1	0.1348	FALSE	462	80	0	856	0	FALSE	ACH-000048
TOV112D_OVARY	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0561	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TOV112D_OVARY	1	1	0.0561	TRUE	0	0	0	434	0	FALSE	ACH-000048
TOV112D_OVARY	RP11-123O10.4--GRIP1	4	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0449	0.0337	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TOV112D_OVARY	1	1	0.0786	FALSE	416	2512	207	587	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-TE	3	5	MT-ND6	1149	chrM:14525:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0.0561	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TOV112D_OVARY	1	1	0.0898	FALSE	499	1288	110	792	0	FALSE	ACH-000048
TOV112D_OVARY	VAT1--MT-ND4L	4	0	VAT1	7695	chr17:41167931:-	MT-ND4L	12006	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0449	0	VAT1->chr17:41166622-41177140:-,vesicle_amine_transport_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TOV112D_OVARY	1	1	0.0449	FALSE	0	0	0	5	0	FALSE	ACH-000048
TOV112D_OVARY	VIM--MT-CO3	4	0	VIM	2142	chr10:17271399:+	MT-CO3	12246	chrM:9248:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0449	0	VIM->chr10:17270258-17279592:+,vimentin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TOV112D_OVARY	1	1	0.0449	FALSE	0	0	0	2	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND4--MT-ND4L	3	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0.0337	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TOV112D_OVARY	1	1	0.0674	FALSE	344	821	44	306	0	FALSE	ACH-000048
TOV112D_OVARY	APP--MT-ND2	3	2	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	1152	7403	0	0	0.0337	0.0225	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TOV112D_OVARY	0	0	0.0562	FALSE	0	1	0	51	0	FALSE	ACH-000048
TOV112D_OVARY	MT-ND6--MT-ND5	3	2	MT-ND6	1462	chrM:14212:-	MT-ND5	6206	chrM:14017:+	INCL_NON_REF_SPLICE	YES	0	3031	1	0	0.0337	0.0225	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	TOV112D_OVARY	0	1	0.0562	FALSE	101	855	57	72	0	FALSE	ACH-000048
TOV112D_OVARY	RP11-120D5.1--MID1	3	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	76	0.56	0.06	0.0337	0.0225	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	TOV112D_OVARY	0.06	0.56	0.0562	FALSE	16	356	14	466	0	FALSE	ACH-000048
TOV112D_OVARY	SAMD5--SASH1	3	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	10	6	0.29	0.4	0.0337	0.0112	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	TOV112D_OVARY	0.29	0.4	0.0449	TRUE	53	396	64	110	0	FALSE	ACH-000048
TOV112D_OVARY	VIM--MT-CO3	3	1	VIM	2189	chr10:17271446:+	MT-CO3	12276	chrM:9278:+	INCL_NON_REF_SPLICE	YES	8943	6	0	0.4	0.0337	0.0112	VIM->chr10:17270258-17279592:+,vimentin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TOV112D_OVARY	0	0.4	0.0449	FALSE	0	0	0	2	0	FALSE	ACH-000048
TOV112D_OVARY	CEP112--SFTPC	3	0	CEP112	36142	chr17:63685247:-	SFTPC	48938	chr8:22019289:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	CEP112->centrosomal_protein_112,chr17:63631656-64188202:-,SFTPC->chr8:22014426-22021992:+,surfactant_protein_C	TOV112D_OVARY	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000048
TOV112D_OVARY	EEF2--RPS28	3	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	TOV112D_OVARY	1	1	0.0337	TRUE	0	0	0	100	0	FALSE	ACH-000048
TOV112D_OVARY	LINC01036--LINC01037	3	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	TOV112D_OVARY	1	1	0.0337	FALSE	0	26	0	50	0	FALSE	ACH-000048
TOV112D_OVARY	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TOV112D_OVARY	1	1	0.0337	FALSE	462	80	0	856	0	FALSE	ACH-000048
TOV112D_OVARY	PARD3--RP11-342D11.2	3	0	PARD3	2552	chr10:34985246:-	RP11-342D11.2	38435	chr10:33502166:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,RP11-342D11.2->chr10:33500205-33502732:+	TOV112D_OVARY	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000048
TOV112D_OVARY	CPSF6--SRP9	2	1	CPSF6	11046	chr12:69656342:+	SRP9	20000	chr1:225965637:+	ONLY_REF_SPLICE	YES	272	52	0.01	0.05	0.0225	0.0112	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	TOV112D_OVARY	0.01	0.05	0.0337	FALSE	0	0	0	1	0	FALSE	ACH-000048
TOV112D_OVARY	RP1-34H18.1--RP11-781A6.1	2	1	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0.0112	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	TOV112D_OVARY	1	1	0.0337	TRUE	94	160	11	37	0	FALSE	ACH-000048
TOV112D_OVARY	SUPT16H--RPGRIP1	2	1	SUPT16H	3385	chr14:21841497:-	RPGRIP1	46882	chr14:21811195:+	ONLY_REF_SPLICE	YES	1352	0	0	1	0.0225	0.0112	LOCAL_INVERSION:-:+:[171],SUPT16H->SPT16_homolog,_facilitates_chromatin_remodeling_subunit,chr14:21819631-21852425:-,RPGRIP1->chr14:21756098-21819460:+,retinitis_pigmentosa_GTPase_regulator_interacting_protein_1	TOV112D_OVARY	0	1	0.0337	FALSE	0	0	0	1	0	FALSE	ACH-000048
TOV112D_OVARY	ATL2--HNRNPLL	2	0	ATL2	1143	chr2:38604285:-	HNRNPLL	32959	chr2:38800569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	TOV112D_OVARY	1	1	0.0225	TRUE	0	1	0	2	1	TRUE	ACH-000048
TOV112D_OVARY	CD99L2--MTMR1	2	0	CD99L2	7181	chrX:149983335:-	MTMR1	26351	chrX:149895687:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[1234],CD99L2->CD99_molecule_like_2,chrX:149934810-150067289:-,MTMR1->chrX:149861435-149933576:+,myotubularin_related_protein_1	TOV112D_OVARY	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000048
TOV112D_OVARY	CHD2--DNM3OS	2	0	CHD2	6529	chr15:93444529:+	DNM3OS	60207	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	TOV112D_OVARY	1	1	0.0225	TRUE	1	2	0	1	0	TRUE	ACH-000048
TOV112D_OVARY	HYDIN--NBPF15	2	0	HYDIN	1063	chr16:71264563:-	NBPF15	125242	chr1:148588994:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-,NBPF15->chr1:148555979-148596267:+,neuroblastoma_breakpoint_family_member_15	TOV112D_OVARY	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000048
TOV112D_OVARY	HYDIN--NBPF15	2	0	HYDIN	1093	chr16:71264533:-	NBPF15	125242	chr1:148588994:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-,NBPF15->chr1:148555979-148596267:+,neuroblastoma_breakpoint_family_member_15	TOV112D_OVARY	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000048
TOV112D_OVARY	PTBP2--DNM3OS	2	0	PTBP2	2930	chr1:97189150:+	DNM3OS	28684	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	TOV112D_OVARY	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000048
TOV112D_OVARY	TWSG1--ANKRD12	2	0	TWSG1	2314	chr18:9337350:+	ANKRD12	17443	chr18:9195549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LOCAL_REARRANGEMENT:+:[48782],TWSG1->chr18:9334765-9402418:+,twisted_gastrulation_BMP_signaling_modulator_1,ANKRD12->ankyrin_repeat_domain_12,chr18:9136226-9285983:+	TOV112D_OVARY	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000048
TOV112D_OVARY	LINC01014--KCNMB2	1	2	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	7	4	0.3	0.43	0.0112	0.0225	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	TOV112D_OVARY	0.3	0.43	0.0337	FALSE	11	60	26	37	0	FALSE	ACH-000048
TOV112D_OVARY	VPS13B--RP11-44N12.2	1	2	VPS13B	2814	chr8:100050794:+	RP11-44N12.2	81363	chr8:99977692:+	ONLY_REF_SPLICE	YES	22	0	0.12	1	0.0112	0.0225	LOCAL_REARRANGEMENT:+:[44982],VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast),RP11-44N12.2->chr8:99973656-99980512:+	TOV112D_OVARY	0.12	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000048
TOV112D_OVARY	GREM2--FMN2	1	1	GREM2	1266	chr1:240775184:-	FMN2	26131	chr1:240458122:+	ONLY_REF_SPLICE	YES	39	21	0.05	0.09	0.0112	0.0112	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[14384],GREM2->chr1:240652873-240775449:-,gremlin_2,_DAN_family_BMP_antagonist,FMN2->chr1:240177648-240638489:+,formin_2	TOV112D_OVARY	0.05	0.09	0.0224	TRUE	0	0	0	2	0	FALSE	ACH-000048
TOV112D_OVARY	GREM2--FMN2	1	1	GREM2	1266	chr1:240775184:-	FMN2	38051	chr1:240635672:+	ONLY_REF_SPLICE	NO	39	301	0.05	0.01	0.0112	0.0112	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[14384],GREM2->chr1:240652873-240775449:-,gremlin_2,_DAN_family_BMP_antagonist,FMN2->chr1:240177648-240638489:+,formin_2	TOV112D_OVARY	0.01	0.05	0.0224	FALSE	0	0	0	2	0	FALSE	ACH-000048
TOV112D_OVARY	SF1--FUS	1	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	320	962	0.01	0	0.0112	0.0112	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	TOV112D_OVARY	0	0.01	0.0224	FALSE	5	20	0	32	0	FALSE	ACH-000048
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXK2--TP63	331	92	FOXK2	5079	chr17:80526077:+	TP63	29777	chr3:189526061:+	ONLY_REF_SPLICE	YES	60	141	0.88	0.75	3.5281	0.9806	FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,TP63->chr3:189349205-189615068:+,tumor_protein_p63	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.88	4.5087	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TP63--FOXK2	265	108	TP63	3197	chr3:189456563:+	FOXK2	31551	chr17:80529600:+	ONLY_REF_SPLICE	YES	157	60	0.7	0.86	2.8246	1.1512	TP63->chr3:189349205-189615068:+,tumor_protein_p63,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.86	3.9758	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	120	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2791	0.3304	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.6095	TRUE	508	994	45	981	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	115	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2258	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2258	FALSE	369	2501	205	193	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	61	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	216	4	0.24	0.94	0.6502	0.064	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.94	0.7142	TRUE	519	3926	326	965	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCCA--MBNL2	50	18	PCCA	3510	chr13:100764315:+	MBNL2	40119	chr13:97986530:+	ONLY_REF_SPLICE	YES	25	54	0.73	0.56	0.5329	0.1919	PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit,MBNL2->chr13:97873688-98046374:+,muscleblind_like_splicing_regulator_2	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	0.73	0.7248	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XRN1--CPLX4	44	28	XRN1	21441	chr3:142116171:-	CPLX4	52620	chr18:56964157:-	ONLY_REF_SPLICE	YES	17	0	0.81	1	0.469	0.2984	XRN1->5'-3'_exoribonuclease_1,chr3:142025449-142166904:-,CPLX4->chr18:56942388-56985881:-,complexin_4	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.7674	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	45	17	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	32	38	0.66	0.62	0.4796	0.1812	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.66	0.6608	TRUE	181	1564	124	196	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UTRN--GPHN	32	21	UTRN	59552	chr6:144999714:+	GPHN	97470	chr14:67243182:+	ONLY_REF_SPLICE	YES	29	22	0.65	0.71	0.3411	0.2238	UTRN->chr6:144606837-145174170:+,utrophin,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.71	0.5649	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	32	11	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	69	5	0.38	0.9	0.3411	0.1172	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.9	0.4583	FALSE	0	0	0	19	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	32	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3411	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3411	TRUE	0	0	0	518	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	30	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3198	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3198	FALSE	369	2501	205	193	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	27	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2878	0.0213	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3091	FALSE	462	80	0	856	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	22	14	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.2345	0.1492	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.3837	FALSE	499	1288	110	792	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	24	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3783	0	0.01	1	0.2558	0.032	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.2878	FALSE	13	9	0	364	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	54	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0.5756	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6396	FALSE	369	2501	205	193	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	62	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0426	0.6608	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7034	FALSE	369	2501	205	193	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	18	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1919	0.0213	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2132	FALSE	499	1288	110	792	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	8	42	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0853	0.4477	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.533	FALSE	369	2501	205	193	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	8	40	MT-CO3	1126	chrM:9332:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	3	1	0.94	0.98	0.0853	0.4264	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	0.98	0.5117	FALSE	189	492	56	216	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UTRN--GPHN	10	25	UTRN	59552	chr6:144999714:+	GPHN	96368	chr14:67176075:+	ONLY_REF_SPLICE	YES	29	22	0.55	0.61	0.1066	0.2665	UTRN->chr6:144606837-145174170:+,utrophin,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.61	0.3731	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXK2--TP63	10	21	FOXK2	3931	chr17:80521424:+	TP63	29777	chr3:189526061:+	ONLY_REF_SPLICE	YES	66	141	0.32	0.18	0.1066	0.2238	FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,TP63->chr3:189349205-189615068:+,tumor_protein_p63	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.32	0.3304	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	11	17	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1172	0.1812	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2984	FALSE	369	2501	205	193	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	40	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	3	29	0.94	0.61	0.0533	0.4264	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.94	0.4797	FALSE	189	492	56	216	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	40	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0.4264	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.469	FALSE	369	2501	205	193	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	14	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1492	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1492	TRUE	0	0	0	434	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	13	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1386	0.0107	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1493	FALSE	369	2501	205	193	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	8	20	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0853	0.2132	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2985	FALSE	369	2501	205	193	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	39	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.032	0.4157	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.4477	FALSE	189	492	56	216	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	7	22	AC104820.2	16783	chr2:182227645:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	69	0	0.3	1	0.0746	0.2345	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.3091	FALSE	0	0	0	16	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TL1--MT-RNR2	3	38	MT-TL1	1095	chrM:3324:+	MT-RNR2	5554	chrM:3149:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.95	0.032	0.405	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.437	FALSE	7	521	16	32	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXDC1--TAF13	12	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1279	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1279	TRUE	7	10	0	216	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	11	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1172	0.0213	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1385	FALSE	462	80	0	856	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	12	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0746	0.1279	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2025	FALSE	499	1288	110	792	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TL1--MT-RNR2	10	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1066	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1066	FALSE	7	521	16	32	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	8	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	23	38	0.39	0.28	0.0853	0.0746	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.39	0.1599	TRUE	267	562	48	632	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3798	0	0	1	0.0959	0.032	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1279	FALSE	13	9	0	364	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	15	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0.1599	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2239	FALSE	499	1288	110	792	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	26	MT-CO3	1033	chrM:9239:+	MT-ATP6	4768	chrM:8510:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.2771	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3091	FALSE	189	492	56	216	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	9	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	1	0.77	0.91	0.0959	0.0107	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.91	0.1066	FALSE	189	492	56	216	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	13	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0.1386	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2026	FALSE	499	1288	110	792	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXK2--TP63	4	19	FOXK2	5079	chr17:80526077:+	TP63	32248	chr3:189582021:+	ONLY_REF_SPLICE	NO	60	267	0.28	0.08	0.0426	0.2025	FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,TP63->chr3:189349205-189615068:+,tumor_protein_p63	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.28	0.2451	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	23	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.96	0.032	0.2452	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.2772	FALSE	189	492	56	216	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	23	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.96	0.032	0.2452	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.2772	FALSE	189	492	56	216	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC024084.1--AC009784.3	7	6	AC024084.1	2134	chr7:135715781:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.0746	0.064	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1386	FALSE	1	6	0	14	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	8	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0853	0.0107	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.096	FALSE	462	80	0	856	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MANBA--UBE2D3	7	3	MANBA	1277	chr4:103681875:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	YES	256	4723	0.04	0	0.0746	0.032	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.1066	TRUE	12	9	1	12	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	11	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.94	0.0533	0.1172	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.1705	FALSE	189	492	56	216	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0746	0.0213	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0959	FALSE	499	1288	110	792	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	6	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	21	39	0.34	0.22	0.064	0.0533	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.34	0.1173	TRUE	267	562	48	632	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	7	0	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0746	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0746	TRUE	0	1	0	84	1	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	16	MT-CO3	1470	chrM:9676:+	MT-ATP6	5404	chrM:9146:+	INCL_NON_REF_SPLICE	YES	1	1	0.95	0.95	0.032	0.1705	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	0.95	0.2025	FALSE	189	492	56	216	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	7	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0746	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0746	FALSE	369	2501	205	193	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	6	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.064	TRUE	0	5	1	24	1	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	12	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	3	1	0.83	0.94	0.032	0.1279	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.94	0.1599	FALSE	189	492	56	216	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.064	FALSE	369	2501	205	193	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	11	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.93	0.032	0.1172	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1492	FALSE	189	492	56	216	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-ND2	5	0	MT-ATP6	1108	chrM:8634:+	MT-ND2	5507	chrM:5295:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0533	FALSE	177	96	13	17	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0533	FALSE	189	492	56	216	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--EIF3A	5	0	PTMA	6060	chr2:232576693:+	EIF3A	30948	chr10:120795654:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,EIF3A->Oncogene{Bushman},chr10:120794356-120840316:-,eukaryotic_translation_initiation_factor_3_subunit_A	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0533	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC024084.1--AC009784.3	3	6	AC024084.1	3174	chr7:135743253:+	AC009784.3	8568	chr7:135801819:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0.064	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.096	FALSE	0	1	0	3	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD8--HNRNPC	4	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0426	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0426	TRUE	2	8	0	24	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-ND2	4	0	MT-ATP6	1098	chrM:8624:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0426	FALSE	177	96	13	17	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0426	FALSE	189	492	56	216	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	4	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0426	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0426	TRUE	1	10	0	18	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF126--BSG	4	0	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0426	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0426	TRUE	0	2	0	12	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-319G9.5--WWOX	4	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0426	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0426	FALSE	154	425	28	76	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	3	3	AC104820.2	6553	chr2:182091262:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	109	0	0.05	1	0.032	0.032	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.064	FALSE	0	0	0	11	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	3	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.032	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.064	FALSE	499	1288	110	792	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.032	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.064	FALSE	462	80	0	856	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC024084.1--AC009784.3	2	6	AC024084.1	3174	chr7:135743253:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0213	0.064	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.0853	FALSE	2	5	0	14	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-ND2	3	1	MT-ATP6	1435	chrM:8961:+	MT-ND2	4715	chrM:4503:+	INCL_NON_REF_SPLICE	YES	7217	0	0	1	0.032	0.0107	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0427	FALSE	177	96	13	17	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-ND2	3	1	MT-ATP6	1130	chrM:8656:+	MT-ND2	5517	chrM:5305:+	INCL_NON_REF_SPLICE	YES	7351	4736	0	0	0.032	0.0107	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0427	FALSE	177	96	13	17	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHSY3--HSPA8P4	3	0	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.032	FALSE	89	26	1	44	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYPLAL1--RRP15	3	0	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.032	TRUE	0	12	0	13	2	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.032	FALSE	189	492	56	216	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	3	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.032	FALSE	369	2501	205	193	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	0	0.6	1	0.0213	0.0426	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.0639	FALSE	16	356	14	466	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC024084.1--AC009784.3	2	3	AC024084.1	1028	chr7:135710536:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0213	0.032	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0533	FALSE	0	0	0	3	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	2	3	AC104820.2	8902	chr2:182127704:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	174	5	0.03	0.5	0.0213	0.032	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.5	0.0533	FALSE	0	0	0	11	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	2	2	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	109	5	0.04	0.44	0.0213	0.0213	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.44	0.0426	FALSE	0	1	0	18	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGEF18--DAZAP1	2	1	ARHGEF18	1135	chr19:7460133:+	DAZAP1	29149	chr19:1417499:+	ONLY_REF_SPLICE	YES	26	319	0.1	0.01	0.0213	0.0107	ARHGEF18->Rho/Rac_guanine_nucleotide_exchange_factor_18,chr19:7459999-7537363:+,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.1	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FRMD4B--UBA3	2	1	FRMD4B	3925	chr3:69481785:-	UBA3	47172	chr3:69129304:-	ONLY_REF_SPLICE	YES	3	1	0.5	0.75	0.0213	0.0107	NEIGHBORS[89582],FRMD4B->FERM_domain_containing_4B,chr3:69219141-69591734:-,UBA3->chr3:69103881-69129559:-,ubiquitin_like_modifier_activating_enzyme_3	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.75	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001432.14--TTC3	2	0	AP001432.14	1179	chr21:38593898:+	TTC3	54382	chr21:38555076:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	2	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001432.14--TTC3	2	0	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	15	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--MBNL1	2	0	DANCR	1530	chr4:53579126:+	MBNL1	17741	chr3:152132730:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FUBP1--IVNS1ABP	2	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	1	4	0	16	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	3	14	2	43	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NINJ2--WNK1	2	0	NINJ2	1452	chr12:772494:-	WNK1	12316	chr12:922808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hypothalamus=1},LOCAL_INVERSION:-:+:[88814],NINJ2->chr12:673462-772945:-,ninjurin_2,WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDK1--AC015688.3	2	0	PDK1	13815	chr2:173460751:+	AC015688.3	35125	chr17:25967598:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	PDK1->ArcherDX_panel,FoundationOne_panel,chr2:173420101-173489823:+,pyruvate_dehydrogenase_kinase_1,AC015688.3->chr17:25950390-25967803:+	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	R3HDM1--CCNT2	2	0	R3HDM1	1179	chr2:136289203:+	CCNT2	40410	chr2:135694411:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+,CCNT2->chr2:135675805-135716912:+,cyclin_T2	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM12B--NSMCE2	2	0	RBM12B	1137	chr8:94753109:-	NSMCE2	25658	chr8:126369461:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	RBM12B->RNA_binding_motif_protein_12B,chr8:94741584-94753245:-,NSMCE2->NSE2/MMS21_homolog,_SMC5-SMC6_complex_SUMO_ligase,chr8:126103921-126379362:+	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-219G17.4--PLA2G6	2	0	RP11-219G17.4	2765	chr17:76267333:-	PLA2G6	39371	chr22:38509661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_FI:{Testis=[count:23=pct:21.9],Brain=[count:18=pct:2.7],Nerve=[count:11=pct:6.5],Thyroid=[count:8=pct:4.5],Ovary=[count:6=pct:11.3],Colon=[count:5=pct:2.6],Pancreas=[count:3=pct:1.7],Uterus=[count:2=pct:4.7],Spleen=[count:2=pct:1.8],Blood=[count:2=pct:1.1],Prostate=[count:2=pct:3.3],Vagina=[count:1=pct:1.8],Blood_Vessel=[count:1=pct:0.3],Muscle=[count:1=pct:0.4],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},RP11-219G17.4->chr17:76257430-76274573:-,PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	63	15	0	9	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SH3GL1--CHAF1A	2	0	SH3GL1	1224	chr19:4400321:-	CHAF1A	29087	chr19:4442242:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_INVERSION:-:+:[2115],SH3GL1->Oncogene{Bushman},SH3_domain_containing_GRB2_like_1,chr19:4360367-4400544:-,CHAF1A->chr19:4402659-4445015:+,chromatin_assembly_factor_1_subunit_A	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	2	0	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	4	3	0	21	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WSB1--RAB1A	2	0	WSB1	10088	chr17:25636298:+	RAB1A	20985	chr2:65325200:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	WSB1->WD_repeat_and_SOCS_box_containing_1,chr17:25621102-25640657:+,RAB1A->Oncogene{Bushman},RAB1A,_member_RAS_oncogene_family,chr2:65297835-65357240:-	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MANBA--UBE2D3	1	3	MANBA	9780	chr4:103610731:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	NO	149	4723	0.03	0	0.0107	0.032	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0427	FALSE	6	5	0	8	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC024084.1--AC009784.3	1	2	AC024084.1	2134	chr7:135715781:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	NO	0	12	1	0.2	0.0107	0.0213	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.032	FALSE	0	3	0	12	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANXA6--CD74	1	1	ANXA6	21978	chr5:150501708:-	CD74	37055	chr5:149785884:-	ONLY_REF_SPLICE	YES	1092	5977	0	0	0.0107	0.0107	ANXA6->annexin_A6,chr5:150480273-150537443:-,CD74->CD74_molecule,Oncogene{Bushman},chr5:149781200-149792492:-	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BLK--FDFT1	1	1	BLK	1591	chr8:11352100:+	FDFT1	27874	chr8:11679259:+	ONLY_REF_SPLICE	NO	685	1195	0	0	0.0107	0.0107	BLK->BLK_proto-oncogene,_Src_family_tyrosine_kinase,chr8:11351510-11422113:+,FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLE4--RP11-355F16.1	1	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	NO	258	0	0.01	1	0.0107	0.0107	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0214	FALSE	5	7	0	37	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--RNF2	1	1	RABGAP1L	1248	chr1:174128795:+	RNF2	56501	chr1:185056684:+	ONLY_REF_SPLICE	YES	71	49	0.03	0.04	0.0107	0.0107	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,RNF2->chr1:185014496-185071740:+,ring_finger_protein_2	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.0214	TRUE	0	0	0	1	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM13--BTBD2	1	1	TIMM13	1481	chr19:2427412:-	BTBD2	12544	chr19:1997462:-	ONLY_REF_SPLICE	YES	456	59	0	0.03	0.0107	0.0107	TIMM13->chr19:2425622-2427892:-,translocase_of_inner_mitochondrial_membrane_13,BTBD2->BTB_domain_containing_2,chr19:1985447-2034880:-	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000061
HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VGLL4--WDPCP	1	1	VGLL4	4478	chr3:11744445:-	WDPCP	36198	chr2:63791758:-	ONLY_REF_SPLICE	YES	28	10	0.07	0.17	0.0107	0.0107	VGLL4->chr3:11597544-11762220:-,vestigial_like_family_member_4,WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-	HH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.17	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000061
CAS1_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	59	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.97	0.6806	0.1961	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAS1_CENTRAL_NERVOUS_SYSTEM	0.97	1	0.8767	TRUE	508	994	45	981	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	43	12	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	126	73	0.3	0.43	0.496	0.1384	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.3	0.43	0.6344	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	33	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	169	6	0.18	0.86	0.3807	0.0461	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAS1_CENTRAL_NERVOUS_SYSTEM	0.18	0.86	0.4268	TRUE	519	3926	326	965	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	31	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3576	0.0577	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.4153	FALSE	462	80	0	856	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	28	7	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	110	55	0.24	0.39	0.323	0.0807	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.24	0.39	0.4037	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	23	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2653	0.0346	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAS1_CENTRAL_NERVOUS_SYSTEM	0.96	1	0.2999	FALSE	499	1288	110	792	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	18	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.87	1	0.2076	0.173	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAS1_CENTRAL_NERVOUS_SYSTEM	0.87	1	0.3806	FALSE	499	1288	110	792	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	21	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2422	0.0346	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAS1_CENTRAL_NERVOUS_SYSTEM	0.96	1	0.2768	FALSE	499	1288	110	792	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	UBXN8--RP11-363L24.3	19	8	UBXN8	8488	chr8:30614404:+	RP11-363L24.3	17254	chr8:31028834:-	ONLY_REF_SPLICE	YES	31	0	0.47	1	0.2192	0.0923	UBXN8->UBX_domain_protein_8,chr8:30589764-30624522:+,RP11-363L24.3->chr8:31024594-31034683:-	CAS1_CENTRAL_NERVOUS_SYSTEM	0.47	1	0.3115	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	19	6	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.2192	0.0692	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAS1_CENTRAL_NERVOUS_SYSTEM	0.96	1	0.2884	FALSE	292	1546	117	613	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	15	12	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	126	58	0.18	0.32	0.173	0.1384	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.18	0.32	0.3114	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	11	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.1269	0.1154	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAS1_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.2423	FALSE	499	1288	110	792	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	12	5	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	184	276	0.08	0.06	0.1384	0.0577	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.06	0.08	0.1961	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	12	3	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	75	55	0.17	0.21	0.1384	0.0346	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.17	0.21	0.173	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	9	13	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	128	47	0.15	0.32	0.1038	0.15	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.15	0.32	0.2538	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	11	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1269	0.0461	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.173	FALSE	462	80	0	856	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	4	29	MT-ATP6	1400	chrM:8926:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	98	58	0.25	0.36	0.0461	0.3345	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.25	0.36	0.3806	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	7	13	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	126	44	0.14	0.31	0.0807	0.15	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.14	0.31	0.2307	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	6	16	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	6	0	0.79	1	0.0692	0.1846	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAS1_CENTRAL_NERVOUS_SYSTEM	0.79	1	0.2538	FALSE	499	1288	110	792	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	5	19	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.0577	0.2192	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAS1_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.2769	FALSE	499	1288	110	792	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	9	2	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	72	53	0.13	0.17	0.1038	0.0231	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.13	0.17	0.1269	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	8	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0923	0.0231	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	CAS1_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.1154	TRUE	254	575	65	124	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	6	9	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.0692	0.1038	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CAS1_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.173	TRUE	477	1352	189	275	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	7	4	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	84	67	0.12	0.14	0.0807	0.0461	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.12	0.14	0.1268	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	6	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.82	0.0692	0.0923	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAS1_CENTRAL_NERVOUS_SYSTEM	0.82	1	0.1615	TRUE	458	1351	185	561	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	19	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.0346	0.2192	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAS1_CENTRAL_NERVOUS_SYSTEM	0.85	1	0.2538	FALSE	499	1288	110	792	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	RP4-565E6.1--HYDIN	7	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0807	0.0346	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	CAS1_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.1153	TRUE	456	1387	91	133	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	18	MT-ATP6	1555	chrM:9081:+	MT-CO2	4955	chrM:7859:+	INCL_NON_REF_SPLICE	YES	12	193	0.64	0.1	0.0346	0.2076	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.1	0.64	0.2422	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	7	2	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	64	46	0.12	0.16	0.0807	0.0231	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.12	0.16	0.1038	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	7	0	PLXDC1	27476	chr17:37222884:-	TAF13	38494	chr1:109605673:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0807	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0807	TRUE	7	10	0	216	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	13	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	126	43	0.11	0.27	0.0346	0.15	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.11	0.27	0.1846	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	13	MT-ATP6	1177	chrM:8703:+	MT-CO2	4836	chrM:7740:+	INCL_NON_REF_SPLICE	YES	139	61	0.1	0.21	0.0346	0.15	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.1	0.21	0.1846	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	4	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0.1038	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1499	FALSE	462	80	0	856	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	5	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	27	24	0.25	0.27	0.0577	0.0461	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CAS1_CENTRAL_NERVOUS_SYSTEM	0.25	0.27	0.1038	TRUE	267	562	48	632	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0692	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0692	FALSE	462	80	0	856	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	APP--MT-ND2	5	2	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	1391	11279	0.01	0	0.0577	0.0231	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	CAS1_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0808	FALSE	0	1	0	51	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	COL6A2--COL6A3	5	2	COL6A2	14840	chr21:47544627:+	COL6A3	55620	chr2:238258852:-	ONLY_REF_SPLICE	YES	3283	2138	0	0	0.0577	0.0231	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_Transformed_fibroblasts=5},HGNC_GENEFAM,PROTCLUST,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	CAS1_CENTRAL_NERVOUS_SYSTEM	0	0	0.0808	FALSE	0	0	0	1	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	5	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	64	44	0.1	0.14	0.0577	0.0231	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.1	0.14	0.0808	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	4	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.48	1	0.0461	0.0692	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAS1_CENTRAL_NERVOUS_SYSTEM	0.48	1	0.1153	FALSE	125	705	46	456	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0577	0.0231	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAS1_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.0808	FALSE	515	4851	409	746	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	WRN--GSR	5	2	WRN	34402	chr8:31024746:+	GSR	41212	chr8:30569605:-	ONLY_REF_SPLICE	YES	16	45	0.3	0.13	0.0577	0.0231	WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+,GSR->chr8:30535583-30585443:-,glutathione_reductase	CAS1_CENTRAL_NERVOUS_SYSTEM	0.13	0.3	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	4	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	24	1	0.27	0.0461	0.0577	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAS1_CENTRAL_NERVOUS_SYSTEM	0.27	1	0.1038	TRUE	465	1949	224	605	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	7	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	5	0	0.67	1	0.0346	0.0807	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAS1_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.1153	FALSE	499	1288	110	792	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	DHX40--VMP1	4	2	DHX40	12936	chr17:57676212:+	VMP1	38423	chr17:57915656:+	ONLY_REF_SPLICE	YES	201	760	0.03	0.01	0.0461	0.0231	NEIGHBORS[98847],DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	CAS1_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0692	FALSE	0	0	0	2	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	6	MT-ATP6	1135	chrM:8661:+	MT-CO2	4824	chrM:7728:+	INCL_NON_REF_SPLICE	YES	104	49	0.08	0.16	0.0346	0.0692	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.08	0.16	0.1038	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	4	2	MT-ATP6	1123	chrM:8649:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	75	15	0.07	0.29	0.0461	0.0231	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.07	0.29	0.0692	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	3	6	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0.0692	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1038	FALSE	462	80	0	856	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	3	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	23	26	0.18	0.16	0.0346	0.0231	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CAS1_CENTRAL_NERVOUS_SYSTEM	0.16	0.18	0.0577	TRUE	267	562	48	632	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	64	44	0.07	0.1	0.0346	0.0231	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.07	0.1	0.0577	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	2	MT-ATP6	1142	chrM:8668:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	110	290	0.04	0.02	0.0346	0.0231	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.02	0.04	0.0577	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	2	MT-ATP6	1117	chrM:8643:+	MT-CO2	4827	chrM:7731:+	INCL_NON_REF_SPLICE	YES	69	52	0.07	0.09	0.0346	0.0231	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.07	0.09	0.0577	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	1	MT-ATP6	1110	chrM:8636:+	MT-CO2	4969	chrM:7873:+	INCL_NON_REF_SPLICE	NO	64	212	0.06	0.02	0.0346	0.0115	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAS1_CENTRAL_NERVOUS_SYSTEM	0.02	0.06	0.0461	FALSE	59	21	0	114	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MANBA--UBE2D3	3	0	MANBA	1277	chr4:103681875:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0346	TRUE	12	9	1	12	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0346	FALSE	499	1288	110	792	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	RNF152--RP11-879F14.1	3	0	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0346	FALSE	275	472	65	43	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	DCBLD2--LINC00973	2	3	DCBLD2	5444	chr3:98600384:-	LINC00973	31158	chr3:98701308:+	ONLY_REF_SPLICE	YES	1059	173	0	0.03	0.0231	0.0346	LOCAL_INVERSION:-:+:[79369],DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,LINC00973->chr3:98699902-98701940:+,long_intergenic_non-protein_coding_RNA_973	CAS1_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0577	FALSE	0	0	0	2	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	18	0	0.31	1	0.0115	0.0807	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAS1_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.0922	FALSE	164	806	69	479	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	APPBP2--ANAPC4	2	0	APPBP2	2515	chr17:58577760:-	ANAPC4	46628	chr4:25417088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-,ANAPC4->anaphase_promoting_complex_subunit_4,chr4:25378835-25420120:+	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	CNIH3--PRKCA	2	0	CNIH3	21273	chr1:224872545:+	PRKCA	37049	chr17:64683229:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	CNIH3->chr1:224622362-224928251:+,cornichon_family_AMPA_receptor_auxiliary_protein_3,PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	FOSL1--XPO1	2	0	FOSL1	3639	chr11:65661485:-	XPO1	34132	chr2:61708416:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	FOXP1--VIM	2	0	FOXP1	5088	chr3:71542577:-	VIM	54806	chr10:17277845:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,VIM->chr10:17270258-17279592:+,vimentin	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	LUZP1--LPPR3	2	0	LUZP1	2577	chr1:23495259:-	LPPR3	20890	chr19:815851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1,LPPR3->chr19:812518-821967:-	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	PANX1--AMOTL1	2	0	PANX1	1566	chr11:93862659:+	AMOTL1	22559	chr11:94583279:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PANX1->chr11:93862094-93915138:+,pannexin_1,AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	UGGT2--METTL21EP	2	0	UGGT2	16543	chr13:96622366:-	METTL21EP	50788	chr13:103543686:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	UGGT2->UDP-glucose_glycoprotein_glucosyltransferase_2,chr13:96453834-96705736:-,METTL21EP->chr13:103532449-103548383:+,methyltransferase_like_21E,_pseudogene	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	PPP2CB--WRN	1	3	PPP2CB	10400	chr8:30648713:-	WRN	51363	chr8:31030511:+	ONLY_REF_SPLICE	NO	300	16	0.01	0.2	0.0115	0.0346	PPP2CB->chr8:30631973-30671830:-,protein_phosphatase_2_catalytic_subunit_beta,WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+	CAS1_CENTRAL_NERVOUS_SYSTEM	0.01	0.2	0.0461	FALSE	0	0	0	1	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	PPP2CB--WRN	1	3	PPP2CB	11885	chr8:30643727:-	WRN	51363	chr8:31030511:+	ONLY_REF_SPLICE	NO	257	16	0.02	0.2	0.0115	0.0346	PPP2CB->chr8:30631973-30671830:-,protein_phosphatase_2_catalytic_subunit_beta,WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+	CAS1_CENTRAL_NERVOUS_SYSTEM	0.02	0.2	0.0461	TRUE	0	0	0	1	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	RPSAP52--HMGA2	1	3	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	5	275	0.44	0.01	0.0115	0.0346	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	CAS1_CENTRAL_NERVOUS_SYSTEM	0.01	0.44	0.0461	FALSE	0	59	0	125	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	FGF14-IT1--FGF14	1	2	FGF14-IT1	3717	chr13:103018795:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0115	0.0231	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	CAS1_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0346	TRUE	80	58	2	10	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	2	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	1	9	0.75	0.25	0.0115	0.0231	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAS1_CENTRAL_NERVOUS_SYSTEM	0.25	0.75	0.0346	FALSE	25	145	6	90	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	18	9	0.14	0.25	0.0115	0.0231	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAS1_CENTRAL_NERVOUS_SYSTEM	0.14	0.25	0.0346	FALSE	8	57	1	47	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	2	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	81	1	0.04	0.0115	0.0231	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CAS1_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0346	FALSE	2	31	0	60	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	81	1	0.04	0.0115	0.0231	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CAS1_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0346	FALSE	16	356	14	466	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0.0231	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0346	FALSE	192	492	57	212	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0115	0.0231	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAS1_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0346	FALSE	407	2205	196	549	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	ADAM19--PCDHGA1	1	1	ADAM19	23767	chr5:156915273:-	PCDHGA1	38080	chr5:140874374:+	ONLY_REF_SPLICE	YES	103	0	0.02	1	0.0115	0.0115	ADAM19->ADAM_metallopeptidase_domain_19,chr5:156822542-157002783:-,PCDHGA1->chr5:140710252-140892546:+,protocadherin_gamma_subfamily_A,_1	CAS1_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	MLLT3--DENND4C	1	1	MLLT3	2890	chr9:20620653:-	DENND4C	52570	chr9:19350700:+	ONLY_REF_SPLICE	NO	6	23	0.25	0.08	0.0115	0.0115	MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3,DENND4C->DENN_domain_containing_4C,chr9:19230433-19374139:+	CAS1_CENTRAL_NERVOUS_SYSTEM	0.08	0.25	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	NEK6--PSMB7	1	1	NEK6	1480	chr9:127020364:+	PSMB7	31340	chr9:127119194:-	ONLY_REF_SPLICE	YES	13	709	0.13	0	0.0115	0.0115	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=9;pct=0.10%;dist=Liver=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Brain_-_Hypothalamus=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1},LOCAL_INVERSION:+:-:[159],NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7	CAS1_CENTRAL_NERVOUS_SYSTEM	0	0.13	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	RP4-565E6.1--HYDIN	1	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	5	1	0.29	0.0115	0.0115	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	CAS1_CENTRAL_NERVOUS_SYSTEM	0.29	1	0.023	TRUE	84	87	4	41	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	TFRC--FN1	1	1	TFRC	11743	chr3:195791180:-	FN1	55562	chr2:216253024:-	ONLY_REF_SPLICE	NO	366	5293	0.01	0	0.0115	0.0115	TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	CAS1_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	TMEM164--RGAG1	1	1	TMEM164	9463	chrX:109416681:+	RGAG1	20408	chrX:109688381:+	ONLY_REF_SPLICE	NO	30	0	0.06	1	0.0115	0.0115	GTEx_FI:{Brain=[count:3=pct:0.5],Muscle=[count:1=pct:0.4]},TMEM164->chrX:109245859-109425962:+,transmembrane_protein_164,RGAG1->chrX:109602044-109699562:+,retrotransposon_gag_domain_containing_1	CAS1_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.023	TRUE	3	4	0	2	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	TNFAIP8--HSD17B4	1	1	TNFAIP8	1216	chr5:118604602:+	HSD17B4	22456	chr5:118809603:+	ONLY_REF_SPLICE	NO	19	157	0.1	0.01	0.0115	0.0115	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	CAS1_CENTRAL_NERVOUS_SYSTEM	0.01	0.1	0.023	FALSE	0	2	0	7	0	FALSE	ACH-000464
CAS1_CENTRAL_NERVOUS_SYSTEM	TRPS1--EIF3H	1	1	TRPS1	4788	chr8:116680101:-	EIF3H	33560	chr8:117738411:-	ONLY_REF_SPLICE	YES	17	665	0.11	0	0.0115	0.0115	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	CAS1_CENTRAL_NERVOUS_SYSTEM	0	0.11	0.023	FALSE	0	11	0	2	0	FALSE	ACH-000464
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	127	58	BCR	3536	chr22:23524426:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	91	13	0.67	0.93	1.3101	0.5983	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.93	1.9084	TRUE	0	2	0	1	2	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	90	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9284	0.2063	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1347	TRUE	508	994	45	981	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	94	2	NCL	6884	chr2:232325380:-	PTMA	22009	chr2:232576646:+	INCL_NON_REF_SPLICE	YES	1008	3735	0.09	0.03	0.9697	0.0206	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.09	0.9903	TRUE	1	0	0	7	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	62	30	ABL1	2970	chr9:133710912:+	BCR	27841	chr22:23595986:+	ONLY_REF_SPLICE	YES	12	89	0.88	0.51	0.6396	0.3095	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.88	0.9491	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	53	2	NCL	6884	chr2:232325380:-	PTMA	21433	chr2:232576070:+	INCL_NON_REF_SPLICE	YES	1008	4841	0.05	0.01	0.5467	0.0206	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.5673	TRUE	1	0	0	7	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	48	20	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	21	20	0.76	0.77	0.4951	0.2063	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.77	0.7014	TRUE	181	1564	124	196	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	50	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	138	6	0.27	0.9	0.5158	0.0206	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.9	0.5364	TRUE	519	3926	326	965	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASAP1--FAM49B	39	19	ASAP1	38335	chr8:131088594:-	FAM49B	54419	chr8:130916831:-	ONLY_REF_SPLICE	YES	24	102	0.71	0.36	0.4023	0.196	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.71	0.5983	FALSE	0	0	0	2	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	36	17	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.3714	0.1754	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.5468	FALSE	43	37	8	105	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	30	17	ABL1	1510	chr9:133589842:+	BCR	27841	chr22:23595986:+	ONLY_REF_SPLICE	YES	7	89	0.87	0.35	0.3095	0.1754	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.87	0.4849	TRUE	0	1	0	1	1	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	33	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3404	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3404	TRUE	0	0	0	518	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	32	1	NCL	6884	chr2:232325380:-	PTMA	22525	chr2:232577162:+	ONLY_REF_SPLICE	YES	1008	3661	0.03	0.01	0.3301	0.0103	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.3404	TRUE	1	0	0	7	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASAP1--FAM49B	17	15	ASAP1	38335	chr8:131088594:-	FAM49B	55506	chr8:130915596:-	ONLY_REF_SPLICE	YES	24	74	0.57	0.3	0.1754	0.1547	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.57	0.3301	FALSE	0	0	0	1	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	18	8	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	3	321	0.9	0.07	0.1857	0.0825	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.9	0.2682	FALSE	43	37	8	105	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	2	58	BCR	5636	chr22:23541539:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	93	13	0.39	0.82	0.0206	0.5983	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.82	0.6189	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	1	58	BCR	3536	chr22:23524426:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	NO	91	13	0.39	0.82	0.0103	0.5983	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.82	0.6086	TRUE	0	2	0	1	2	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASAP1--FAM49B	10	20	ASAP1	38335	chr8:131088594:-	FAM49B	53263	chr8:130924761:-	ONLY_REF_SPLICE	YES	24	110	0.56	0.21	0.1032	0.2063	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.56	0.3095	FALSE	0	0	0	1	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	13	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	5922	10071	0	0	0.1341	0.0103	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1444	FALSE	183	104	9	328	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	11	7	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1176	11	0.02	0.62	0.1135	0.0722	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.62	0.1857	FALSE	43	37	8	105	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	6	17	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0.1754	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2373	FALSE	43	37	8	105	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	9	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	6908	9826	0	0	0.0928	0.0103	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1031	FALSE	183	104	9	328	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AEBP2--RP11-405A12.2	9	0	AEBP2	15624	chr12:19873625:+	RP11-405A12.2	19888	chr12:20076132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0928	0	NEIGHBORS[54650],AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,RP11-405A12.2->chr12:19928385-20162871:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0928	FALSE	0	0	0	8	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	9	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0928	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0928	FALSE	351	233	23	137	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	20	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0.2063	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2476	FALSE	43	37	8	105	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	8	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0825	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0825	FALSE	183	104	9	328	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	15	MT-ND5	2644	chrM:13980:+	MT-ATP8	5855	chrM:8408:+	INCL_NON_REF_SPLICE	YES	1013	0	0.02	1	0.0413	0.1547	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.196	FALSE	43	37	8	105	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	17	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0.1754	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2063	FALSE	43	37	8	105	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	11	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11	11	0.58	0.58	0.0413	0.1135	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	0.58	0.1548	FALSE	43	37	8	105	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	6	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0619	0.0206	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.0825	FALSE	515	4851	409	746	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	9	MT-ND5	2687	chrM:14023:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	406	11	0.03	0.54	0.0413	0.0928	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.54	0.1341	FALSE	43	37	8	105	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASAP1--FAM49B	1	19	ASAP1	38335	chr8:131088594:-	FAM49B	53361	chr8:130924663:-	ONLY_REF_SPLICE	YES	24	109	0.45	0.16	0.0103	0.196	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.45	0.2063	FALSE	0	0	0	1	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	3	MT-ATP6	1179	chrM:8705:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	7199	8141	0	0	0.0516	0.0309	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0825	FALSE	183	104	9	328	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	11	MT-ND5	2321	chrM:13657:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	940	0	0.01	1	0.0309	0.1135	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1444	FALSE	43	37	8	105	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	7	MT-ND5	2740	chrM:14076:+	MT-ATP8	5938	chrM:8491:+	INCL_NON_REF_SPLICE	YES	1	707	0.92	0.02	0.0413	0.0722	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.92	0.1135	FALSE	43	37	8	105	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	5	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2365	35	0	0.2	0.0413	0.0516	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.2	0.0929	FALSE	43	37	8	105	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRG--CADPS	5	1	PTPRG	10407	chr3:61989171:+	CADPS	49308	chr3:62751659:-	ONLY_REF_SPLICE	YES	10	0	0.38	1	0.0516	0.0103	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Amygdala=1},PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,CADPS->Ca2+_dependent_secretion_activator,chr3:62384022-62861054:-	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.0619	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	5	0	MT-CO2	1301	chrM:7886:+	MT-ND2	5531	chrM:5316:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0516	FALSE	105	46	5	21	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	5	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0516	TRUE	0	1	0	48	1	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	6	MT-ATP6	1555	chrM:9081:+	MT-CO1	4998	chrM:6220:+	INCL_NON_REF_SPLICE	YES	1805	7957	0	0	0.0309	0.0619	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0928	FALSE	183	104	9	328	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	2	MT-ND5	2778	chrM:14114:+	MT-ATP8	6007	chrM:8560:+	INCL_NON_REF_SPLICE	YES	0	358	1	0.02	0.0413	0.0206	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0619	FALSE	43	37	8	105	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	5931	8024	0	0	0.0413	0.0103	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0516	FALSE	183	104	9	328	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	5	MT-ND5	2303	chrM:13639:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	990	35	0.01	0.19	0.0309	0.0516	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.19	0.0825	FALSE	43	37	8	105	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	4	1	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	YES	1567	0	0	1	0.0413	0.0103	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0516	FALSE	0	1	0	48	1	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	4	MT-ATP6	1537	chrM:9063:+	MT-CO1	5319	chrM:6541:+	INCL_NON_REF_SPLICE	NO	2602	9583	0	0	0.0309	0.0413	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0722	FALSE	183	104	9	328	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	4	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0413	FALSE	416	2512	207	587	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	3	2	NCL	6884	chr2:232325380:-	PTMA	21982	chr2:232576619:+	INCL_NON_REF_SPLICE	NO	1008	3942	0	0	0.0309	0.0206	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0515	FALSE	1	0	0	7	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PFKL--MT-ND4L	3	2	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	723	0	0.01	1	0.0309	0.0206	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0515	FALSE	0	0	0	33	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	3	1	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	23	0	0.15	1	0.0309	0.0103	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.0412	TRUE	61	154	6	19	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK6--EPM2A	3	0	CDK6	6518	chr7:92354940:-	EPM2A	26896	chr6:146007432:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	CDK6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:92234235-92465908:-,cyclin-dependent_kinase_6,EPM2A->chr6:145822719-146057160:-,epilepsy,_progressive_myoclonus_type_2A,_Lafora_disease_(laforin)	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	3	0	MT-CO2	1285	chrM:7870:+	MT-ND2	5522	chrM:5307:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	FALSE	105	46	5	21	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	3	0	MT-ND3	1025	chrM:10083:+	MT-ATP8	4411	chrM:8430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	FALSE	351	233	23	137	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	3	0	NCL	6013	chr2:232326251:-	PTMA	22576	chr2:232577213:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	TRUE	1	0	0	7	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SKA3--MIPEP	3	0	SKA3	1228	chr13:21750514:-	MIPEP	15448	chr13:24460645:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	SKA3->chr13:21727734-21750741:-,spindle_and_kinetochore_associated_complex_subunit_3,MIPEP->chr13:24304328-24463558:-,mitochondrial_intermediate_peptidase	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRRM2--PAK2	3	0	SRRM2	16105	chr16:2819122:+	PAK2	38890	chr3:196556171:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	SRRM2->chr16:2802330-2822539:+,serine/arginine_repetitive_matrix_2,PAK2->chr3:196466728-196559518:+,p21_(RAC1)_activated_kinase_2	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCOF1--PTMA	3	0	TCOF1	10789	chr5:149755852:+	PTMA	36295	chr2:232577153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	TCOF1->chr5:149737202-149779871:+,treacle_ribosome_biogenesis_factor_1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1027	chr6:30691628:-	TUBBP2	4927	chr13:41959166:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	TRUE	0	1	0	48	1	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1137	chr6:30691518:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	TRUE	0	1	0	48	1	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASAP1--FAM49B	1	6	ASAP1	38335	chr8:131088594:-	FAM49B	61227	chr8:130883742:-	ONLY_REF_SPLICE	YES	24	90	0.23	0.07	0.0103	0.0619	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.23	0.0722	FALSE	0	0	0	1	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUFY3--MOB1B	2	1	RUFY3	2091	chr4:71571011:+	MOB1B	32856	chr4:71808540:+	ONLY_REF_SPLICE	YES	4	12	0.43	0.2	0.0206	0.0103	NEIGHBORS[95011],RUFY3->RUN_and_FYVE_domain_containing_3,chr4:71569921-71673032:+,MOB1B->MOB_kinase_activator_1B,chr4:71768043-71888166:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.43	0.0309	FALSE	0	0	0	1	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AHCTF1--PLK4	2	0	AHCTF1	13122	chr1:247061510:-	PLK4	52598	chr4:128812247:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	AHCTF1->AT-hook_containing_transcription_factor_1,chr1:247002400-247095280:-,PLK4->chr4:128802016-128820350:+,polo_like_kinase_4	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATE1--RIPK1	2	0	ATE1	9819	chr10:123658356:-	RIPK1	25204	chr6:3076998:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ATE1->arginyltransferase_1,chr10:123499939-123688316:-,RIPK1->chr6:3064225-3115421:+,receptor_interacting_serine/threonine_kinase_1	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C14orf37--GNAS	2	0	C14orf37	1185	chr14:58764673:-	GNAS	37556	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMC2--CD9	2	0	CMC2	2457	chr16:81040339:-	CD9	21473	chr12:6334592:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	CMC2->C-x9-C_motif_containing_2,chr16:81009698-81053875:-,CD9->CD9_molecule,Oncogene{Bushman},chr12:6308881-6347425:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--PRPF4B	2	0	CPSF6	11046	chr12:69656342:+	PRPF4B	36987	chr6:4061249:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PRPF4B->Oncogene{Bushman},chr6:4021501-4065217:+,pre-mRNA_processing_factor_4B	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	1	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2291D10.4--CAMLG	2	0	CTD-2291D10.4	1187	chr19:23258189:+	CAMLG	11998	chr5:134086449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	CTD-2291D10.4->chr19:23258003-23283163:+,CAMLG->calcium_modulating_ligand,chr5:134074191-134087847:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUL2--PARD3	2	0	CUL2	7237	chr10:35349802:-	PARD3	52459	chr10:34606266:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GTEx&tcga_normals:1/3694=0.03%,CUL2->chr10:35297479-35379570:-,cullin_2,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND1A--OSBPL1A	2	0	DENND1A	1264	chr9:126692168:-	OSBPL1A	67125	chr18:21819346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERBB2IP--GUSBP2	2	0	ERBB2IP	1332	chr5:65222634:+	GUSBP2	41956	chr6:26856976:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ERBB2IP->chr5:65222303-65378377:+,GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FDPS--CRY2	2	0	FDPS	3847	chr1:155282186:+	CRY2	16892	chr11:45883611:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,CRY2->chr11:45868669-45904798:+,cryptochrome_circadian_clock_2	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GATAD2B--EEF1D	2	0	GATAD2B	1243	chr1:153895209:-	EEF1D	30360	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTA1--TRIM22	2	0	MTA1	10235	chr14:105927290:+	TRIM22	26291	chr11:5719545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	MTA1->Oncogene{Bushman},chr14:105886159-105937066:+,metastasis_associated_1,TRIM22->chr11:5710919-5758319:+,tripartite_motif_containing_22	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCLN--SGTA	2	0	NCLN	1652	chr19:3186212:+	SGTA	21568	chr19:2769089:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	NCLN->chr19:3185561-3209573:+,nicalin,SGTA->chr19:2754712-2783369:-,small_glutamine_rich_tetratricopeptide_repeat_containing_alpha	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFA6--CD52	2	0	NDUFA6	1350	chr22:42486610:-	CD52	9200	chr1:26646662:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	NDUFA6->NADH:ubiquinone_oxidoreductase_subunit_A6,chr22:42481529-42486959:-,CD52->CD52_molecule,Oncogene{Bushman},chr1:26644448-26647014:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--PGAM5	2	0	OAZ1	1259	chr19:2269743:+	PGAM5	13887	chr12:133297264:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAIP2--C19orf44	2	0	PAIP2	4805	chr5:138700432:+	C19orf44	16817	chr19:16620310:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2,C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAIP2--RNH1	2	0	PAIP2	1394	chr5:138677669:+	RNH1	15257	chr11:502181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2,RNH1->chr11:494512-507300:-,ribonuclease/angiogenin_inhibitor_1	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCNT--DUSP1	2	0	PCNT	1161	chr21:47744196:+	DUSP1	55341	chr5:172197309:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	PCNT->chr21:47744036-47865682:+,pericentrin,DUSP1->chr5:172195093-172198198:-,dual_specificity_phosphatase_1	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKDC--MCM4	2	0	PRKDC	1211	chr8:48872533:-	MCM4	96812	chr8:48882358:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[2],PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RLF--CPNE1	2	0	RLF	1264	chr1:40627308:+	CPNE1	22223	chr20:34220845:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,CPNE1->chr20:34213953-34252878:-,copine_1	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	FALSE	46	201	11	112	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-321N4.5--SRP9	2	0	RP11-321N4.5	2343	chr6:86322550:-	SRP9	11024	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	RP11-321N4.5->chr6:86267696-86324952:-,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0103	0.0413	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0516	FALSE	407	2205	196	549	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL22--MRPS27	2	0	RPL22	8153	chr1:6252990:-	MRPS27	24355	chr5:71533955:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22,MRPS27->chr5:71515236-71616473:-,mitochondrial_ribosomal_protein_S27	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL5--ANKHD1	2	0	RPL5	1093	chr1:93297674:+	ANKHD1	51107	chr5:139928491:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5,ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC35E3--LRRC41	2	0	SLC35E3	1674	chr12:69140559:+	LRRC41	27398	chr1:46744929:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	SLC35E3->chr12:69139886-69187508:+,solute_carrier_family_35_member_E3,LRRC41->chr1:46726868-46769280:-,leucine_rich_repeat_containing_41	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TADA2A--USP48	2	0	TADA2A	3848	chr17:35783715:+	USP48	53680	chr1:22021714:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,USP48->chr1:22004791-22110099:-,ubiquitin_specific_peptidase_48	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBXN2B--KIFAP3	2	0	UBXN2B	1206	chr8:59324028:+	KIFAP3	41776	chr1:169930376:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	UBXN2B->UBX_domain_protein_2B,chr8:59323823-59364060:+,KIFAP3->chr1:169890467-170054349:-,kinesin_associated_protein_3	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VEZT--METAP2	2	0	VEZT	1141	chr12:95611662:+	METAP2	41371	chr12:95897841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	VEZT->chr12:95611522-95696566:+,vezatin,_adherens_junctions_transmembrane_protein,METAP2->Oncogene{Bushman},chr12:95867296-95909615:+,methionyl_aminopeptidase_2	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	2	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	FALSE	272	151	14	158	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR45B--HKR1	2	0	WDR45B	2355	chr17:80601825:-	HKR1	30463	chr19:37838092:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	WDR45B->WD_repeat_domain_45B,chr17:80572438-80606429:-,HKR1->HKR1,_GLI-Kruppel_zinc_finger_family_member,Oncogene{Bushman},chr19:37803739-37860267:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WT1-AS--EFTUD2	2	0	WT1-AS	1329	chr11:32457392:+	EFTUD2	41491	chr17:42931003:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	WT1-AS->WT1_antisense_RNA,chr11:32457064-32480315:+,EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YIPF6--BAZ1B	2	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	1	23	1	24	8	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFC3H1--CNOT2	2	0	ZFC3H1	5746	chr12:72050665:-	CNOT2	47007	chr12:70704675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ZFC3H1->chr12:72003252-72061505:-,zinc_finger_C3H1-type_containing,CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF189--TMEM38B	2	0	ZNF189	2138	chr9:104162292:+	TMEM38B	14033	chr9:108483818:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ZNF189->chr9:104161155-104172942:+,zinc_finger_protein_189,TMEM38B->chr9:108456825-108538893:+,transmembrane_protein_38B	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZSCAN16-AS1--MAP3K5	2	0	ZSCAN16-AS1	1549	chr6:28104523:-	MAP3K5	32065	chr6:136913752:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ZSCAN16-AS1->ZSCAN16_antisense_RNA_1,chr6:28089573-28105071:-,MAP3K5->chr6:136878185-137113656:-,mitogen-activated_protein_kinase_kinase_kinase_5	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0103	0.0206	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0309	FALSE	467	2173	244	435	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX29--GSPT1	1	2	SNX29	19351	chr16:12223615:+	GSPT1	43359	chr16:11991892:-	ONLY_REF_SPLICE	YES	10	71	0.23	0.04	0.0103	0.0206	GTEx_v2:{count=2;pct=0.02%;dist=Ovary=1,Brain_-_Spinal_cord_(cervical_c-1)=1},LOCAL_INVERSION:+:-:[60655],SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,GSPT1->G1_to_S_phase_transition_1,Oncogene{Bushman},chr16:11961985-12009939:-	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.23	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--SNX5	1	1	DANCR	1530	chr4:53579126:+	SNX5	11640	chr20:17937681:-	ONLY_REF_SPLICE	NO	205	266	0.01	0.01	0.0103	0.0103	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LAPTM5--PUM1	1	1	LAPTM5	1162	chr1:31230506:-	PUM1	20196	chr1:31479949:-	ONLY_REF_SPLICE	NO	240	62	0.01	0.03	0.0103	0.0103	LAPTM5->Oncogene{Bushman},chr1:31205316-31230667:-,lysosomal_protein_transmembrane_5,PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OGT--TAF1	1	1	OGT	5186	chrX:70757922:+	TAF1	57095	chrX:70674020:+	ONLY_REF_SPLICE	YES	151	34	0.01	0.06	0.0103	0.0103	LOCAL_REARRANGEMENT:+:[709],OGT->O-linked_N-acetylglucosamine_(GlcNAc)_transferase,chrX:70752933-70795747:+,TAF1->ArcherDX_panel,FoundationOne_panel,TATA-box_binding_protein_associated_factor_1,chrX:70586114-70752224:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OGT--TAF1	1	1	OGT	5186	chrX:70757922:+	TAF1	39467	chrX:70607111:+	ONLY_REF_SPLICE	NO	151	30	0.01	0.06	0.0103	0.0103	LOCAL_REARRANGEMENT:+:[709],OGT->O-linked_N-acetylglucosamine_(GlcNAc)_transferase,chrX:70752933-70795747:+,TAF1->ArcherDX_panel,FoundationOne_panel,TATA-box_binding_protein_associated_factor_1,chrX:70586114-70752224:+	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000059
SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC11A2--RAD21	1	1	SLC11A2	13493	chr12:51390600:-	RAD21	39060	chr8:117864947:-	ONLY_REF_SPLICE	YES	19	378	0.1	0.01	0.0103	0.0103	SLC11A2->chr12:51373184-51422349:-,solute_carrier_family_11_member_2,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-	SUPB15_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.1	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000059
A427_LUNG	TIMM23B--LINC00843	116	51	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9229	0.4058	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	A427_LUNG	1	1	1.3287	TRUE	508	994	45	981	0	FALSE	ACH-000757
A427_LUNG	TIMM23--RP11-464F9.1	70	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	509	10	0.13	0.88	0.5569	0.0398	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	A427_LUNG	0.13	0.88	0.5967	TRUE	519	3926	326	965	0	FALSE	ACH-000757
A427_LUNG	AFG3L2--SPIRE1	49	48	AFG3L2	12978	chr18:12348272:-	SPIRE1	41344	chr18:12464957:-	ONLY_REF_SPLICE	YES	637	137	0.13	0.41	0.3898	0.3819	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[69198],AFG3L2->AFG3_like_matrix_AAA_peptidase_subunit_2,chr18:12328943-12377313:-,SPIRE1->chr18:12446511-12658133:-,spire_type_actin_nucleation_factor_1	A427_LUNG	0.13	0.41	0.7717	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	CLIC4--SRRM1	36	67	CLIC4	1269	chr1:25072116:+	SRRM1	16370	chr1:24962135:+	ONLY_REF_SPLICE	YES	540	0	0.16	1	0.2864	0.533	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[72090],CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	A427_LUNG	0.16	1	0.8194	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	CLIC4--SRRM1	30	90	CLIC4	1269	chr1:25072116:+	SRRM1	15289	chr1:24959510:+	ONLY_REF_SPLICE	YES	540	0	0.18	1	0.2387	0.716	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[72090],CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	A427_LUNG	0.18	1	0.9547	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	MT-TA--MT-TC	50	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3978	0.0159	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A427_LUNG	1	1	0.4137	FALSE	462	80	0	856	0	FALSE	ACH-000757
A427_LUNG	NOTCH2--PDE4DIP	42	21	NOTCH2	4777	chr1:120572529:-	PDE4DIP	55307	chr1:145021167:-	ONLY_REF_SPLICE	YES	63	2	0.5	0.97	0.3342	0.1671	NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2,PDE4DIP->Oncogene{Bushman},chr1:144836157-145076186:-,phosphodiesterase_4D_interacting_protein	A427_LUNG	0.5	0.97	0.5013	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	NADSYN1--MTL5	40	25	NADSYN1	20833	chr11:71194063:+	MTL5	54226	chr11:68478517:-	ONLY_REF_SPLICE	YES	259	2	0.2	0.97	0.3182	0.1989	{Klijn_CCL:Lung=1},NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+,MTL5->chr11:68474908-68519032:-	A427_LUNG	0.2	0.97	0.5171	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	CLIC4--SRRM1	34	25	CLIC4	1269	chr1:25072116:+	SRRM1	20487	chr1:24972475:+	ONLY_REF_SPLICE	YES	540	14	0.1	0.81	0.2705	0.1989	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[72090],CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	A427_LUNG	0.1	0.81	0.4694	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	RP11-355B11.2--FAM161A	38	4	RP11-355B11.2	1192	chr2:61698514:+	FAM161A	17574	chr2:62054393:-	ONLY_REF_SPLICE	YES	1	49	0.98	0.46	0.3023	0.0318	RP11-355B11.2->chr2:61698323-61711265:+,FAM161A->chr2:62051989-62081278:-,family_with_sequence_similarity_161_member_A	A427_LUNG	0.46	0.98	0.3341	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	ZNF654--HMGB2	36	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2864	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	A427_LUNG	1	1	0.2864	TRUE	0	0	0	518	0	FALSE	ACH-000757
A427_LUNG	MT-ND6--MT-TE	34	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.2705	0.0398	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A427_LUNG	0.93	1	0.3103	FALSE	499	1288	110	792	0	FALSE	ACH-000757
A427_LUNG	NADSYN1--MTL5	24	38	NADSYN1	21969	chr11:71195493:+	MTL5	54226	chr11:68478517:-	ONLY_REF_SPLICE	YES	197	2	0.24	0.97	0.1909	0.3023	{Klijn_CCL:Lung=1},NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+,MTL5->chr11:68474908-68519032:-	A427_LUNG	0.24	0.97	0.4932	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	PPIL4--KATNA1	30	9	PPIL4	5926	chr6:149854594:-	KATNA1	21912	chr6:149925918:-	ONLY_REF_SPLICE	YES	100	97	0.28	0.29	0.2387	0.0716	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[48835],PPIL4->chr6:149825869-149867174:-,peptidylprolyl_isomerase_like_4,KATNA1->chr6:149916009-149970108:-,katanin_catalytic_subunit_A1	A427_LUNG	0.28	0.29	0.3103	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	RP11-96H19.1--RP11-446N19.1	25	22	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	2	0.92	0.96	0.1989	0.175	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A427_LUNG	0.92	0.96	0.3739	FALSE	407	2205	196	549	0	FALSE	ACH-000757
A427_LUNG	LPP--KNTC1	21	34	LPP	5388	chr3:187943315:+	KNTC1	69238	chr12:123046468:+	ONLY_REF_SPLICE	YES	8	1	0.87	0.98	0.1671	0.2705	LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,KNTC1->chr12:123011793-123110943:+,kinetochore_associated_1	A427_LUNG	0.87	0.98	0.4376	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	AP003900.6--RP11-417J8.3	27	3	AP003900.6	1122	chr21:11169841:+	RP11-417J8.3	9877	chr1:142621001:+	ONLY_REF_SPLICE	YES	10	16	0.75	0.65	0.2148	0.0239	AP003900.6->chr21:11169720-11184046:+,RP11-417J8.3->chr1:142618769-142729975:+	A427_LUNG	0.65	0.75	0.2387	TRUE	0	0	0	2	0	TRUE	ACH-000757
A427_LUNG	MT-ND6--MT-TE	21	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	8	0	0.83	1	0.1671	0.1353	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A427_LUNG	0.83	1	0.3024	FALSE	499	1288	110	792	0	FALSE	ACH-000757
A427_LUNG	OR51S1--TP53I11	20	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1591	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	A427_LUNG	1	1	0.1591	TRUE	402	216	10	229	0	FALSE	ACH-000757
A427_LUNG	MT-ND6--MT-TE	18	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.1432	0.0477	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A427_LUNG	0.89	1	0.1909	FALSE	499	1288	110	792	0	FALSE	ACH-000757
A427_LUNG	RP11-96H19.1--RP11-446N19.1	17	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	15	0.87	0.64	0.1353	0.0796	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A427_LUNG	0.64	0.87	0.2149	FALSE	515	4851	409	746	0	FALSE	ACH-000757
A427_LUNG	RP11-849H4.2--UNC93B1	17	8	RP11-849H4.2	4416	chr11:71634355:-	UNC93B1	18284	chr11:67767150:-	ONLY_REF_SPLICE	YES	20	166	0.56	0.13	0.1353	0.0636	RP11-849H4.2->chr11:71576555-71639700:-,UNC93B1->chr11:67758575-67772452:-,unc-93_homolog_B1_(C._elegans)	A427_LUNG	0.13	0.56	0.1989	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	RP11-355B11.2--FAM161A	14	18	RP11-355B11.2	4015	chr2:61709871:+	FAM161A	17574	chr2:62054393:-	ONLY_REF_SPLICE	YES	35	49	0.48	0.4	0.1114	0.1432	RP11-355B11.2->chr2:61698323-61711265:+,FAM161A->chr2:62051989-62081278:-,family_with_sequence_similarity_161_member_A	A427_LUNG	0.4	0.48	0.2546	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	C15orf57--CBX3	13	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	87	123	0.22	0.17	0.1034	0.0955	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A427_LUNG	0.17	0.22	0.1989	TRUE	267	562	48	632	0	FALSE	ACH-000757
A427_LUNG	LPIN2--ARHGAP28	13	11	LPIN2	23718	chr18:2920776:-	ARHGAP28	39528	chr18:6824761:+	ONLY_REF_SPLICE	YES	109	4	0.18	0.86	0.1034	0.0875	LPIN2->chr18:2916992-3013313:-,lipin_2,ARHGAP28->Rho_GTPase_activating_protein_28,chr18:6729717-6915715:+	A427_LUNG	0.18	0.86	0.1909	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	RP11-96H19.1--RP11-446N19.1	9	26	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	6	2	0.85	0.95	0.0716	0.2069	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A427_LUNG	0.85	0.95	0.2785	FALSE	192	492	57	212	0	FALSE	ACH-000757
A427_LUNG	C15orf57--CBX3	10	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	82	124	0.2	0.14	0.0796	0.0796	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A427_LUNG	0.14	0.2	0.1592	TRUE	267	562	48	632	0	FALSE	ACH-000757
A427_LUNG	KCTD3--KCNK2	11	4	KCTD3	2710	chr1:215747461:+	KCNK2	31911	chr1:215368296:+	ONLY_REF_SPLICE	YES	17	0	0.47	1	0.0875	0.0318	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},KCTD3->chr1:215740735-215795149:+,potassium_channel_tetramerization_domain_containing_3,KCNK2->chr1:215179118-215410436:+,potassium_two_pore_domain_channel_subfamily_K_member_2	A427_LUNG	0.47	1	0.1193	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	MT-ND6--MT-TE	5	26	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	8	0	0.79	1	0.0398	0.2069	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A427_LUNG	0.79	1	0.2467	FALSE	499	1288	110	792	0	FALSE	ACH-000757
A427_LUNG	GCG--IFIH1	10	0	GCG	1247	chr2:163008668:-	IFIH1	17731	chr2:163139086:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0796	0	GCG->chr2:162999392-163008914:-,glucagon,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	A427_LUNG	1	1	0.0796	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0796	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	A427_LUNG	1	1	0.0796	TRUE	0	0	0	434	0	FALSE	ACH-000757
A427_LUNG	MT-ND6--MT-TE	3	27	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	8	0	0.79	1	0.0239	0.2148	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A427_LUNG	0.79	1	0.2387	FALSE	499	1288	110	792	0	FALSE	ACH-000757
A427_LUNG	MT-ND6--MT-TE	5	19	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.0398	0.1512	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A427_LUNG	0.89	1	0.191	FALSE	499	1288	110	792	0	FALSE	ACH-000757
A427_LUNG	NADSYN1--MTL5	3	25	NADSYN1	21969	chr11:71195493:+	MTL5	54281	chr11:68478462:-	INCL_NON_REF_SPLICE	YES	197	4	0.12	0.88	0.0239	0.1989	{Klijn_CCL:Lung=1},NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+,MTL5->chr11:68474908-68519032:-	A427_LUNG	0.12	0.88	0.2228	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	RP11-96H19.1--RP11-446N19.1	3	22	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	4	0	0.86	1	0.0239	0.175	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A427_LUNG	0.86	1	0.1989	FALSE	275	511	55	178	0	FALSE	ACH-000757
A427_LUNG	LPP--KNTC1	6	8	LPP	1738	chr3:187871809:+	KNTC1	69238	chr12:123046468:+	ONLY_REF_SPLICE	YES	7	1	0.67	0.93	0.0477	0.0636	LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,KNTC1->chr12:123011793-123110943:+,kinetochore_associated_1	A427_LUNG	0.67	0.93	0.1113	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	RP11-680G10.1--GSE1	8	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0636	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A427_LUNG	1	1	0.0636	TRUE	465	1949	224	605	0	FALSE	ACH-000757
A427_LUNG	LPP--KNTC1	4	15	LPP	2859	chr3:187926106:+	KNTC1	69238	chr12:123046468:+	ONLY_REF_SPLICE	YES	12	1	0.61	0.95	0.0318	0.1193	LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,KNTC1->chr12:123011793-123110943:+,kinetochore_associated_1	A427_LUNG	0.61	0.95	0.1511	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	MT-ND6--MT-TE	3	17	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	8	0	0.71	1	0.0239	0.1353	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A427_LUNG	0.71	1	0.1592	FALSE	499	1288	110	792	0	FALSE	ACH-000757
A427_LUNG	MT-ND6--MT-TE	3	17	MT-ND6	1333	chrM:14341:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	NO	6	0	0.77	1	0.0239	0.1353	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A427_LUNG	0.77	1	0.1592	FALSE	499	1288	110	792	0	FALSE	ACH-000757
A427_LUNG	LRRK2--RP11-399D6.2	7	0	LRRK2	2660	chr12:40619442:+	RP11-399D6.2	67607	chr9:22820737:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0557	0	LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2,RP11-399D6.2->chr9:22646199-22824212:+	A427_LUNG	1	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	RP11-680G10.1--GSE1	7	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0557	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A427_LUNG	1	1	0.0557	TRUE	458	1351	185	561	0	FALSE	ACH-000757
A427_LUNG	MT-ND6--MT-TE	4	11	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0318	0.0875	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A427_LUNG	0.94	1	0.1193	FALSE	499	1288	110	792	0	FALSE	ACH-000757
A427_LUNG	RP11-114H23.1--RP11-114H23.2	6	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0477	0.0159	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	A427_LUNG	0.89	1	0.0636	FALSE	81	155	12	160	0	FALSE	ACH-000757
A427_LUNG	C7orf10--CDK13	6	0	C7orf10	12564	chr7:40356454:+	CDK13	30326	chr7:40027198:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0477	0	LOCAL_REARRANGEMENT:+:[37842],C7orf10->chr7:40174575-40900362:+,CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13	A427_LUNG	1	1	0.0477	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	YIPF6--BAZ1B	6	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0477	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	A427_LUNG	1	1	0.0477	TRUE	1	23	1	24	8	FALSE	ACH-000757
A427_LUNG	EIF1--PPIA	5	1	EIF1	1107	chr17:39845243:+	PPIA	7809	chr7:44836303:+	INCL_NON_REF_SPLICE	YES	63	0	0.09	1	0.0398	0.008	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	A427_LUNG	0.09	1	0.0478	TRUE	0	0	0	7	0	TRUE	ACH-000757
A427_LUNG	AP005482.1--RNMT	4	4	AP005482.1	1731	chr18:12658772:+	RNMT	8110	chr18:13731475:+	ONLY_REF_SPLICE	YES	7	195	0.53	0.04	0.0318	0.0318	AP005482.1->chr18:12658042-12663470:+,RNMT->RNA_guanine-7_methyltransferase,chr18:13726659-13764557:+	A427_LUNG	0.04	0.53	0.0636	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	CDK13--C7orf10	4	4	CDK13	4476	chr7:40027857:+	C7orf10	39023	chr7:40488886:+	ONLY_REF_SPLICE	YES	62	0	0.11	1	0.0318	0.0318	NEIGHBORS[37842],CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,C7orf10->chr7:40174575-40900362:+	A427_LUNG	0.11	1	0.0636	FALSE	0	0	0	1	0	FALSE	ACH-000757
A427_LUNG	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A427_LUNG	1	1	0.0398	FALSE	462	80	0	856	0	FALSE	ACH-000757
A427_LUNG	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	A427_LUNG	1	1	0.0398	TRUE	22	156	2	142	0	FALSE	ACH-000757
A427_LUNG	MT-TA--MT-TC	4	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0.0239	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A427_LUNG	1	1	0.0557	FALSE	462	80	0	856	0	FALSE	ACH-000757
A427_LUNG	RP11-96H19.1--RP11-446N19.1	2	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	6	15	0.67	0.44	0.0159	0.0796	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A427_LUNG	0.44	0.67	0.0955	FALSE	467	2173	244	435	0	FALSE	ACH-000757
A427_LUNG	RPS6KB1--VMP1	4	2	RPS6KB1	1240	chr17:57970686:+	VMP1	32885	chr17:57842332:+	ONLY_REF_SPLICE	YES	108	1638	0.05	0	0.0318	0.0159	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	A427_LUNG	0	0.05	0.0477	FALSE	0	2	0	6	2	FALSE	ACH-000757
A427_LUNG	RPSAP52--HMGA2	4	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	1	2712	0.86	0	0.0318	0.0159	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	A427_LUNG	0	0.86	0.0477	FALSE	0	59	0	125	0	FALSE	ACH-000757
A427_LUNG	IGF2BP2--EHHADH	4	1	IGF2BP2	2393	chr3:185540941:-	EHHADH	29045	chr3:184966305:-	ONLY_REF_SPLICE	YES	322	4	0.02	0.56	0.0318	0.008	IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,EHHADH->chr3:184908412-184999778:-,enoyl-CoA,_hydratase/3-hydroxyacyl_CoA_dehydrogenase	A427_LUNG	0.02	0.56	0.0398	TRUE	0	0	0	1	0	FALSE	ACH-000757
A427_LUNG	MRE11A--CNTN5	4	0	MRE11A	16618	chr11:94192574:-	CNTN5	45615	chr11:100061858:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	MRE11A->ArcherDX_panel,FoundationOne_panel,MRE11_homolog_A,_double_strand_break_repair_nuclease,Oncogene{Bushman},chr11:94152895-94227074:-,CNTN5->chr11:98891683-100229616:+,contactin_5	A427_LUNG	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	MYOM1--DLGAP1	4	0	MYOM1	2624	chr18:3214932:-	DLGAP1	47565	chr18:4005201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	MYOM1->chr18:3066805-3220106:-,myomesin_1,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	A427_LUNG	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0239	0.0239	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A427_LUNG	1	1	0.0478	FALSE	462	80	0	856	0	FALSE	ACH-000757
A427_LUNG	PIEZO2--GNAL	3	3	PIEZO2	2160	chr18:11066126:-	GNAL	76869	chr18:11824917:+	ONLY_REF_SPLICE	YES	0	30	1	0.17	0.0239	0.0239	PIEZO2->chr18:10666480-11148587:-,piezo_type_mechanosensitive_ion_channel_component_2,GNAL->G_protein_subunit_alpha_L,chr18:11688955-11885684:+	A427_LUNG	0.17	1	0.0478	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	RABGAP1L--KLHL20	3	3	RABGAP1L	5083	chr1:174200493:+	KLHL20	60750	chr1:173725062:+	ONLY_REF_SPLICE	YES	41	40	0.13	0.13	0.0239	0.0239	{Klijn_CCL:Lung=1},RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,KLHL20->chr1:173684080-173755840:+,kelch_like_family_member_20	A427_LUNG	0.13	0.13	0.0478	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	AC002066.1--AC073130.1	3	2	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	21	0	0.19	1	0.0239	0.0159	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	A427_LUNG	0.19	1	0.0398	FALSE	0	3	0	33	0	FALSE	ACH-000757
A427_LUNG	CTGF--S100A6	3	2	CTGF	1180	chr6:132272334:-	S100A6	8082	chr1:153507837:-	INCL_NON_REF_SPLICE	YES	167	445	0.03	0.01	0.0239	0.0159	CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	A427_LUNG	0.01	0.03	0.0398	FALSE	0	0	0	2	0	FALSE	ACH-000757
A427_LUNG	RP11-114H23.1--RP11-114H23.2	3	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	11288	chr12:76092601:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0239	0.0159	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	A427_LUNG	0.83	1	0.0398	FALSE	0	0	0	2	0	FALSE	ACH-000757
A427_LUNG	RPS6KB1--VMP1	3	2	RPS6KB1	1240	chr17:57970686:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	108	1736	0.04	0	0.0239	0.0159	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	A427_LUNG	0	0.04	0.0398	FALSE	0	9	0	10	6	FALSE	ACH-000757
A427_LUNG	VMP1--TUBD1	3	2	VMP1	16307	chr17:57915758:+	TUBD1	35333	chr17:57937785:-	ONLY_REF_SPLICE	YES	1990	53	0	0.09	0.0239	0.0159	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_INVERSION:+:-:[17235],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,TUBD1->chr17:57936851-57970304:-,tubulin_delta_1	A427_LUNG	0	0.09	0.0398	FALSE	0	0	0	1	0	FALSE	ACH-000757
A427_LUNG	EIF1--ACTB	3	1	EIF1	1107	chr17:39845243:+	ACTB	11209	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	63	4	0.06	0.5	0.0239	0.008	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Fallopian_Tube=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	A427_LUNG	0.06	0.5	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	MT-TA--MT-TC	3	1	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0239	0.008	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A427_LUNG	1	1	0.0319	FALSE	462	80	0	856	0	FALSE	ACH-000757
A427_LUNG	BTG3--CXADR	3	0	BTG3	8807	chr21:18965977:-	CXADR	24807	chr21:18965696:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},LOCAL_INVERSION:-:+:[74],BTG3->BTG_family_member_3,chr21:18965971-18985265:-,CXADR->chr21:18884700-18965897:+,coxsackie_virus_and_adenovirus_receptor	A427_LUNG	1	1	0.0239	TRUE	1	0	0	2	0	TRUE	ACH-000757
A427_LUNG	BTG3--CXADR	3	0	BTG3	8732	chr21:18966052:-	CXADR	24967	chr21:18965856:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},LOCAL_INVERSION:-:+:[74],BTG3->BTG_family_member_3,chr21:18965971-18985265:-,CXADR->chr21:18884700-18965897:+,coxsackie_virus_and_adenovirus_receptor	A427_LUNG	1	1	0.0239	TRUE	1	0	0	2	0	TRUE	ACH-000757
A427_LUNG	CALR--RPS28	3	0	CALR	1131	chr19:13049522:+	RPS28	8929	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0239	0	CALR->calreticulin,chr19:13049392-13055303:+,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	A427_LUNG	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	DLC1--FMNL2	3	0	DLC1	10024	chr8:13133771:-	FMNL2	44960	chr2:153463853:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,FMNL2->chr2:153191751-153506348:+,formin_like_2	A427_LUNG	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0239	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A427_LUNG	1	1	0.0239	FALSE	499	1288	110	792	0	FALSE	ACH-000757
A427_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0239	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A427_LUNG	1	1	0.0239	FALSE	499	1288	110	792	0	FALSE	ACH-000757
A427_LUNG	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0239	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	A427_LUNG	1	1	0.0239	TRUE	0	0	0	434	0	FALSE	ACH-000757
A427_LUNG	RCC1--GNAS	3	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	A427_LUNG	1	1	0.0239	TRUE	0	3	0	13	2	TRUE	ACH-000757
A427_LUNG	RP11-355B11.2--FAM161A	3	0	RP11-355B11.2	1184	chr2:61698506:+	FAM161A	19166	chr2:62052801:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0239	0	RP11-355B11.2->chr2:61698323-61711265:+,FAM161A->chr2:62051989-62081278:-,family_with_sequence_similarity_161_member_A	A427_LUNG	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	RP11-355B11.2--FAM161A	1	8	RP11-355B11.2	2905	chr2:61707718:+	FAM161A	17574	chr2:62054393:-	ONLY_REF_SPLICE	YES	14	49	0.39	0.16	0.008	0.0636	RP11-355B11.2->chr2:61698323-61711265:+,FAM161A->chr2:62051989-62081278:-,family_with_sequence_similarity_161_member_A	A427_LUNG	0.16	0.39	0.0716	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	UHRF1BP1L--ANKS1B	2	4	UHRF1BP1L	1257	chr12:100536370:-	ANKS1B	33688	chr12:100219167:-	ONLY_REF_SPLICE	YES	33	19	0.15	0.24	0.0159	0.0318	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[43801],UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	A427_LUNG	0.15	0.24	0.0477	FALSE	0	0	0	2	0	FALSE	ACH-000757
A427_LUNG	AP003900.6--RP11-417J8.3	2	3	AP003900.6	3299	chr21:11174002:+	RP11-417J8.3	9877	chr1:142621001:+	ONLY_REF_SPLICE	YES	32	16	0.14	0.24	0.0159	0.0239	AP003900.6->chr21:11169720-11184046:+,RP11-417J8.3->chr1:142618769-142729975:+	A427_LUNG	0.14	0.24	0.0398	TRUE	0	0	0	2	0	TRUE	ACH-000757
A427_LUNG	RAB3GAP1--ACMSD	2	3	RAB3GAP1	26392	chr2:135926319:+	ACMSD	36524	chr2:135616831:+	ONLY_REF_SPLICE	YES	212	0	0.02	1	0.0159	0.0239	RAB3GAP1->RAB3_GTPase_activating_protein_catalytic_subunit_1,chr2:135809835-135933964:+,ACMSD->aminocarboxymuconate_semialdehyde_decarboxylase,chr2:135596117-135659604:+	A427_LUNG	0.02	1	0.0398	TRUE	0	0	0	1	0	FALSE	ACH-000757
A427_LUNG	RPS6KB1--VMP1	2	3	RPS6KB1	7326	chr17:57992064:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	113	1736	0.04	0	0.0159	0.0239	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	A427_LUNG	0	0.04	0.0398	FALSE	0	4	0	3	2	FALSE	ACH-000757
A427_LUNG	FAP--IFIH1	2	2	FAP	18180	chr2:163055267:-	IFIH1	38731	chr2:163163365:-	ONLY_REF_SPLICE	YES	39	573	0.09	0.01	0.0159	0.0159	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[21928],FAP->chr2:163027194-163101661:-,fibroblast_activation_protein_alpha,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	A427_LUNG	0.01	0.09	0.0318	FALSE	0	0	0	1	0	FALSE	ACH-000757
A427_LUNG	FBRSL1--NOC4L	2	1	FBRSL1	19923	chr12:133153517:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	NO	88	74	0.03	0.04	0.0159	0.008	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	A427_LUNG	0.03	0.04	0.0239	TRUE	1	4	0	5	0	FALSE	ACH-000757
A427_LUNG	HDLBP--THAP4	2	1	HDLBP	2464	chr2:242254985:-	THAP4	44071	chr2:242545888:-	ONLY_REF_SPLICE	YES	145	436	0.02	0.01	0.0159	0.008	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein,THAP4->THAP_domain_containing_4,chr2:242523820-242576864:-	A427_LUNG	0.01	0.02	0.0239	FALSE	0	2	0	4	1	FALSE	ACH-000757
A427_LUNG	RPS6KB1--VMP1	2	1	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	108	1888	0.03	0	0.0159	0.008	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	A427_LUNG	0	0.03	0.0239	FALSE	0	9	0	11	6	FALSE	ACH-000757
A427_LUNG	ZFAND6--MTHFS	2	1	ZFAND6	1242	chr15:80352151:+	MTHFS	23938	chr15:80137784:-	ONLY_REF_SPLICE	YES	383	514	0.01	0.01	0.0159	0.008	GTEx_FI:{Blood=[count:2=pct:1.1]},ZFAND6->chr15:80351910-80430735:+,zinc_finger_AN1-type_containing_6,MTHFS->5,10-methenyltetrahydrofolate_synthetase_(5-formyltetrahydrofolate_cyclo-ligase),chr15:80125927-80189721:-	A427_LUNG	0.01	0.01	0.0239	FALSE	1	2	0	3	0	FALSE	ACH-000757
A427_LUNG	ADD3--KIAA1598	2	0	ADD3	3765	chr10:111768057:+	KIAA1598	36980	chr10:118719741:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	ADD3->Oncogene{Bushman},adducin_3,chr10:111756126-111895323:+,KIAA1598->chr10:118643742-118886097:-	A427_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	ANKHD1--CYSTM1	2	0	ANKHD1	1460	chr5:139781858:+	CYSTM1	47050	chr5:139622890:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,CYSTM1->chr5:139554227-139661637:+,cysteine_rich_transmembrane_module_containing_1	A427_LUNG	1	1	0.0159	TRUE	1	2	1	5	0	TRUE	ACH-000757
A427_LUNG	ANXA1--ALDH1A1	2	0	ANXA1	1168	chr9:75766840:+	ALDH1A1	21839	chr9:75555168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	LOCAL_INVERSION:+:-:[71315],ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+,ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-	A427_LUNG	1	1	0.0159	TRUE	0	0	0	4	0	TRUE	ACH-000757
A427_LUNG	CASP8--FANCC	2	0	CASP8	1670	chr2:202098835:+	FANCC	37121	chr9:97888863:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	CASP8->Oncogene{Bushman},caspase_8,chr2:202098166-202152434:+,FANCC->ArcherDX_panel,Fanconi_anemia_complementation_group_C,FoundationOne_panel,Oncogene{Bushman},chr9:97861336-98079991:-	A427_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	CCDC34--SRRM1	2	0	CCDC34	4280	chr11:27371879:-	SRRM1	22701	chr1:24975350:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	CCDC34->chr11:27352374-27385415:-,coiled-coil_domain_containing_34,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	A427_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	CDK13--C7orf10	2	0	CDK13	2816	chr7:39991451:+	C7orf10	36669	chr7:40356359:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	NEIGHBORS[37842],CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,C7orf10->chr7:40174575-40900362:+	A427_LUNG	1	1	0.0159	FALSE	0	1	0	1	0	FALSE	ACH-000757
A427_LUNG	CPSF6--SRSF1	2	0	CPSF6	11046	chr12:69656342:+	SRSF1	22199	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	A427_LUNG	1	1	0.0159	TRUE	2	7	0	12	0	FALSE	ACH-000757
A427_LUNG	DCUN1D2--TFDP1	2	0	DCUN1D2	1286	chr13:114144982:-	TFDP1	18891	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[93746],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	A427_LUNG	1	1	0.0159	TRUE	0	1	0	6	1	TRUE	ACH-000757
A427_LUNG	INSR--SET	2	0	INSR	2795	chr19:7267356:-	SET	40215	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	INSR->chr19:7112266-7294045:-,insulin_receptor,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	A427_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	MBLAC1--UBE2I	2	0	MBLAC1	1440	chr7:99724756:+	UBE2I	13659	chr16:1364021:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	MBLAC1->chr7:99724317-99726118:+,metallo-beta-lactamase_domain_containing_1,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	A427_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	MKNK2--CCT3	2	0	MKNK2	1444	chr19:2050800:-	CCT3	16699	chr1:156305679:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	MKNK2->MAP_kinase_interacting_serine/threonine_kinase_2,chr19:2037470-2051243:-,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	A427_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	A427_LUNG	1	1	0.0159	TRUE	145	312	16	51	0	FALSE	ACH-000757
A427_LUNG	RP5-1158E12.3--CT45A4	2	0	RP5-1158E12.3	3112	chrX:45708809:-	CT45A4	8673	chrX:134950252:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RP5-1158E12.3->chrX:45707328-45710920:-,CT45A4->chrX:134928331-134953994:-	A427_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	TJP1--WDR43	2	0	TJP1	6366	chr15:30092849:-	WDR43	61583	chr2:29169316:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	TJP1->chr15:29991571-30261068:-,tight_junction_protein_1,WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+	A427_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	UVSSA--MAEA	2	0	UVSSA	1924	chr4:1341977:+	MAEA	26629	chr4:1305767:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	GTEx_FI:{Blood=[count:5=pct:2.9],Skin=[count:4=pct:1.3],Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:1=pct:0.8],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[7119],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	A427_LUNG	1	1	0.0159	TRUE	0	3	0	4	2	TRUE	ACH-000757
A427_LUNG	RPS6KB1--VMP1	1	3	RPS6KB1	4306	chr17:57987972:+	VMP1	30683	chr17:57814814:+	ONLY_REF_SPLICE	YES	134	2334	0.03	0	0.008	0.0239	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	A427_LUNG	0	0.03	0.0319	FALSE	0	0	0	1	0	FALSE	ACH-000757
A427_LUNG	YWHAE--CRK	1	3	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	2821	148	0	0.03	0.008	0.0239	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	A427_LUNG	0	0.03	0.0319	FALSE	6	50	7	115	0	FALSE	ACH-000757
A427_LUNG	AC002066.1--AC073130.1	1	2	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	NO	19	0	0.14	1	0.008	0.0159	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	A427_LUNG	0.14	1	0.0239	FALSE	0	1	1	30	0	FALSE	ACH-000757
A427_LUNG	BIRC3--YAP1	1	2	BIRC3	11601	chr11:102201972:+	YAP1	26017	chr11:102076624:+	ONLY_REF_SPLICE	YES	4248	879	0	0	0.008	0.0159	LOCAL_REARRANGEMENT:+:[84061],BIRC3->Oncogene{Bushman},baculoviral_IAP_repeat_containing_3,chr11:102188215-102210134:+,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	A427_LUNG	0	0	0.0239	FALSE	0	0	0	1	0	FALSE	ACH-000757
A427_LUNG	RPS6KB1--VMP1	1	2	RPS6KB1	4306	chr17:57987972:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	134	1888	0.02	0	0.008	0.0159	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	A427_LUNG	0	0.02	0.0239	FALSE	0	2	1	6	1	FALSE	ACH-000757
A427_LUNG	AHCY--DYNLRB1	1	1	AHCY	2446	chr20:32891049:-	DYNLRB1	17682	chr20:33114073:+	ONLY_REF_SPLICE	YES	106	11	0.02	0.15	0.008	0.008	AHCY->adenosylhomocysteinase,chr20:32868074-32899608:-,DYNLRB1->chr20:33104214-33128762:+,dynein_light_chain_roadblock-type_1	A427_LUNG	0.02	0.15	0.016	TRUE	0	0	0	1	0	FALSE	ACH-000757
A427_LUNG	ANKRD12--VAPA	1	1	ANKRD12	11771	chr18:9221997:+	VAPA	36164	chr18:9931807:+	ONLY_REF_SPLICE	YES	90	1247	0.02	0	0.008	0.008	GTEx&tcga_normals:1/3694=0.03%,ANKRD12->ankyrin_repeat_domain_12,chr18:9136226-9285983:+,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	A427_LUNG	0	0.02	0.016	FALSE	0	0	0	3	0	FALSE	ACH-000757
A427_LUNG	AP005482.1--RNMT	1	1	AP005482.1	1731	chr18:12658772:+	RNMT	9569	chr18:13734463:+	ONLY_REF_SPLICE	YES	7	111	0.22	0.02	0.008	0.008	AP005482.1->chr18:12658042-12663470:+,RNMT->RNA_guanine-7_methyltransferase,chr18:13726659-13764557:+	A427_LUNG	0.02	0.22	0.016	TRUE	0	0	0	1	0	FALSE	ACH-000757
A427_LUNG	CTC-786C10.1--GSE1	1	1	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	NO	0	91	1	0.02	0.008	0.008	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A427_LUNG	0.02	1	0.016	TRUE	2	3	0	21	0	FALSE	ACH-000757
A427_LUNG	DMXL1--TNFAIP8	1	1	DMXL1	3678	chr5:118407351:+	TNFAIP8	68062	chr5:118728511:+	ONLY_REF_SPLICE	YES	75	81	0.03	0.02	0.008	0.008	NEIGHBORS[19554],DMXL1->Dmx_like_1,chr5:118373467-118584833:+,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	A427_LUNG	0.02	0.03	0.016	FALSE	0	1	0	2	0	FALSE	ACH-000757
A427_LUNG	DPYD--MIR137HG	1	1	DPYD	2277	chr1:98348820:-	MIR137HG	41427	chr1:98455125:-	ONLY_REF_SPLICE	YES	495	8	0	0.2	0.008	0.008	LOCAL_REARRANGEMENT:-:[66951],DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,MIR137HG->MIR137_host_gene,chr1:98453556-98515419:-	A427_LUNG	0	0.2	0.016	FALSE	0	1	0	1	1	FALSE	ACH-000757
A427_LUNG	FAP--IFIH1	1	1	FAP	13350	chr2:163070448:-	IFIH1	42204	chr2:163139086:-	ONLY_REF_SPLICE	NO	33	685	0.06	0	0.008	0.008	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[21928],FAP->chr2:163027194-163101661:-,fibroblast_activation_protein_alpha,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	A427_LUNG	0	0.06	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000757
A427_LUNG	MSRB3--HMGA2	1	1	MSRB3	1223	chr12:65672645:+	HMGA2	31473	chr12:66345163:+	ONLY_REF_SPLICE	YES	420	1578	0	0	0.008	0.008	MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	A427_LUNG	0	0	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000757
A427_LUNG	MSRB3--HMGA2	1	1	MSRB3	9323	chr12:65762806:+	HMGA2	24116	chr12:66232299:+	ONLY_REF_SPLICE	NO	454	1583	0	0	0.008	0.008	MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	A427_LUNG	0	0	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000757
A427_LUNG	NAPG--VAPA	1	1	NAPG	1254	chr18:10526155:+	VAPA	28984	chr18:9950392:+	ONLY_REF_SPLICE	YES	165	1213	0.01	0	0.008	0.008	NAPG->NSF_attachment_protein_gamma,chr18:10525902-10552758:+,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	A427_LUNG	0	0.01	0.016	FALSE	0	1	0	3	0	FALSE	ACH-000757
A427_LUNG	PIEZO2--GNAL	1	1	PIEZO2	2160	chr18:11066126:-	GNAL	80475	chr18:11862394:+	ONLY_REF_SPLICE	YES	0	38	1	0.05	0.008	0.008	PIEZO2->chr18:10666480-11148587:-,piezo_type_mechanosensitive_ion_channel_component_2,GNAL->G_protein_subunit_alpha_L,chr18:11688955-11885684:+	A427_LUNG	0.05	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000757
A427_LUNG	RP11-761E20.1--NHP2L1	1	1	RP11-761E20.1	2200	chrX:115062719:-	NHP2L1	13596	chr22:42076368:-	ONLY_REF_SPLICE	YES	0	92	1	0.02	0.008	0.008	RP11-761E20.1->chrX:115033604-115085422:-,NHP2L1->chr22:42069934-42086508:-	A427_LUNG	0.02	1	0.016	TRUE	0	0	0	1	0	FALSE	ACH-000757
A427_LUNG	RP11-85M11.2--BCHE	1	1	RP11-85M11.2	1200	chr3:164924947:+	BCHE	21614	chr3:165504099:-	ONLY_REF_SPLICE	YES	4	1939	0.33	0	0.008	0.008	RP11-85M11.2->chr3:164924748-165373211:+,BCHE->butyrylcholinesterase,chr3:165490692-165555260:-	A427_LUNG	0	0.33	0.016	FALSE	0	1	0	1	0	FALSE	ACH-000757
A427_LUNG	SCAMP1--AP3B1	1	1	SCAMP1	11604	chr5:77755185:+	AP3B1	28426	chr5:77477486:-	ONLY_REF_SPLICE	NO	107	260	0.02	0.01	0.008	0.008	GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[65760],SCAMP1->chr5:77656339-77776562:+,secretory_carrier_membrane_protein_1,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	A427_LUNG	0.01	0.02	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000757
A427_LUNG	SNHG5--UBE2D2	1	1	SNHG5	1780	chr6:86387672:-	UBE2D2	12631	chr5:138979957:+	ONLY_REF_SPLICE	NO	1420	169	0	0.01	0.008	0.008	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	A427_LUNG	0	0.01	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000757
A427_LUNG	SPATS2--AHSA2	1	1	SPATS2	3067	chr12:49765073:+	AHSA2	32445	chr2:61406116:+	ONLY_REF_SPLICE	YES	495	518	0	0	0.008	0.008	SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	A427_LUNG	0	0	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000757
JHH1_LIVER	ZNF787--ZSCAN5B	112	28	ZNF787	1109	chr19:56632541:-	ZSCAN5B	9675	chr19:56709289:-	ONLY_REF_SPLICE	YES	29	0	0.83	1	1.5235	0.3809	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[68290],ZNF787->chr19:56598732-56632649:-,zinc_finger_protein_787,ZSCAN5B->chr19:56700939-56709289:-,zinc_finger_and_SCAN_domain_containing_5B	JHH1_LIVER	0.83	1	1.9044	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	MT-TA--MT-TN	113	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5371	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH1_LIVER	1	1	1.5371	FALSE	369	2501	205	193	0	FALSE	ACH-000620
JHH1_LIVER	SYNRG--EVX1	80	19	SYNRG	20601	chr17:35913217:-	EVX1	41363	chr7:27284667:+	ONLY_REF_SPLICE	YES	68	0	0.59	1	1.0882	0.2585	{Klijn_CCL:Liver=1},SYNRG->chr17:35874900-35969544:-,synergin,_gamma,EVX1->chr7:27282164-27290112:+,even-skipped_homeobox_1	JHH1_LIVER	0.59	1	1.3467	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	MT-TA--MT-TC	76	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0338	0.068	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHH1_LIVER	1	1	1.1018	FALSE	462	80	0	856	0	FALSE	ACH-000620
JHH1_LIVER	RPS11--RPL13A	54	30	RPS11	4047	chr19:50002928:+	RPL13A	9732	chr19:49994682:+	INCL_NON_REF_SPLICE	YES	0	5877	1	0.01	0.7345	0.4081	LOCAL_REARRANGEMENT:+:[4057],RPS11->chr19:49999622-50002946:+,ribosomal_protein_S11,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	JHH1_LIVER	0.01	1	1.1426	TRUE	0	0	0	1	0	FALSE	ACH-000620
JHH1_LIVER	TANC1--CRLF1	40	24	TANC1	9655	chr2:160007067:+	CRLF1	45675	chr19:18705244:-	ONLY_REF_SPLICE	YES	49	20	0.57	0.76	0.5441	0.3265	{Klijn_CCL:Liver=1},TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,CRLF1->chr19:18683030-18718551:-,cytokine_receptor_like_factor_1	JHH1_LIVER	0.57	0.76	0.8706	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	CA5BP1--GS1-594A7.3	43	10	CA5BP1	3501	chrX:15699170:+	GS1-594A7.3	15673	chrX:15639135:+	ONLY_REF_SPLICE	YES	13	0	0.8	1	0.5849	0.136	LOCAL_REARRANGEMENT:+:[53448],CA5BP1->carbonic_anhydrase_5B_pseudogene_1,chrX:15693055-15721847:+,GS1-594A7.3->chrX:15621004-15639607:+	JHH1_LIVER	0.8	1	0.7209	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	TIMM23B--LINC00843	40	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5441	0.1904	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHH1_LIVER	1	1	0.7345	TRUE	508	994	45	981	0	FALSE	ACH-000620
JHH1_LIVER	CCT6P1--VKORC1L1	38	17	CCT6P1	1137	chr7:65216265:+	VKORC1L1	15876	chr7:65413658:+	ONLY_REF_SPLICE	YES	6	52	0.9	0.51	0.5169	0.2312	CCT6P1->chaperonin_containing_TCP1_subunit_6_pseudogene_1,chr7:65216129-65228341:+,VKORC1L1->chr7:65338254-65424550:+,vitamin_K_epoxide_reductase_complex_subunit_1_like_1	JHH1_LIVER	0.51	0.9	0.7481	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	MT-ATP6--MT-CO2	34	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	97	2	0.27	0.95	0.4625	0.0272	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHH1_LIVER	0.27	0.95	0.4897	FALSE	59	21	0	114	0	FALSE	ACH-000620
JHH1_LIVER	MT-TA--MT-TN	14	72	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.1904	0.9794	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH1_LIVER	1	1	1.1698	FALSE	369	2501	205	193	0	FALSE	ACH-000620
JHH1_LIVER	MT-ND6--MT-TE	30	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4081	0.0952	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH1_LIVER	1	1	0.5033	FALSE	499	1288	110	792	0	FALSE	ACH-000620
JHH1_LIVER	MT-TA--MT-TN	13	55	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1768	0.7482	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH1_LIVER	1	1	0.925	FALSE	369	2501	205	193	0	FALSE	ACH-000620
JHH1_LIVER	TIMM23--RP11-464F9.1	24	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	180	0	0.13	1	0.3265	0.0272	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JHH1_LIVER	0.13	1	0.3537	TRUE	519	3926	326	965	0	FALSE	ACH-000620
JHH1_LIVER	MT-TA--MT-TN	18	20	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2448	0.2721	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH1_LIVER	1	1	0.5169	FALSE	369	2501	205	193	0	FALSE	ACH-000620
JHH1_LIVER	PTPN14--ABHD17AP3	20	12	PTPN14	2267	chr1:214724526:-	ABHD17AP3	43165	chr1:214781827:-	INCL_NON_REF_SPLICE	YES	65	2	0.33	0.94	0.2721	0.1632	LOCAL_REARRANGEMENT:-:[53021],PTPN14->Oncogene{Bushman},chr1:214522039-214725792:-,protein_tyrosine_phosphatase,_non-receptor_type_14,ABHD17AP3->abhydrolase_domain_containing_17A_pseudogene_3,chr1:214778813-214782183:-	JHH1_LIVER	0.33	0.94	0.4353	TRUE	0	0	0	2	0	TRUE	ACH-000620
JHH1_LIVER	MT-ND6--MT-TE	17	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	31	0	0.51	1	0.2312	0.204	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH1_LIVER	0.51	1	0.4352	FALSE	499	1288	110	792	0	FALSE	ACH-000620
JHH1_LIVER	WNK1--IQSEC3	17	14	WNK1	3905	chr12:922980:+	IQSEC3	48075	chr12:234799:+	ONLY_REF_SPLICE	YES	74	0	0.3	1	0.2312	0.1904	{Klijn_CCL:Liver=1},WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,IQSEC3->IQ_motif_and_Sec7_domain_3,chr12:175931-287626:+	JHH1_LIVER	0.3	1	0.4216	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	CA5BP1--GS1-594A7.3	18	6	CA5BP1	1847	chrX:15693901:+	GS1-594A7.3	15673	chrX:15639135:+	ONLY_REF_SPLICE	YES	9	0	0.73	1	0.2448	0.0816	LOCAL_REARRANGEMENT:+:[53448],CA5BP1->carbonic_anhydrase_5B_pseudogene_1,chrX:15693055-15721847:+,GS1-594A7.3->chrX:15621004-15639607:+	JHH1_LIVER	0.73	1	0.3264	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	RPS11--RPL13A	5	57	RPS11	4143	chr19:50003024:+	RPL13A	9526	chr19:49994476:+	INCL_NON_REF_SPLICE	NO	0	6250	1	0.01	0.068	0.7754	LOCAL_REARRANGEMENT:+:[4057],RPS11->chr19:49999622-50002946:+,ribosomal_protein_S11,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	JHH1_LIVER	0.01	1	0.8434	FALSE	0	0	0	1	0	FALSE	ACH-000620
JHH1_LIVER	ERBB4--AC079610.1	18	2	ERBB4	6418	chr2:212812155:-	AC079610.1	50458	chr2:213446132:-	ONLY_REF_SPLICE	YES	10	0	0.67	1	0.2448	0.0272	LOCAL_REARRANGEMENT:-:[42516],ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,AC079610.1->chr2:213446081-213886269:-	JHH1_LIVER	0.67	1	0.272	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	MT-TA--MT-TC	17	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2312	0.0816	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHH1_LIVER	1	1	0.3128	FALSE	462	80	0	856	0	FALSE	ACH-000620
JHH1_LIVER	MT-TA--MT-TN	18	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2448	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH1_LIVER	1	1	0.2448	FALSE	369	2501	205	193	0	FALSE	ACH-000620
JHH1_LIVER	RP11-123O10.4--GRIP1	16	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2176	0.1088	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHH1_LIVER	1	1	0.3264	FALSE	416	2512	207	587	0	FALSE	ACH-000620
JHH1_LIVER	UNK--C17orf77	13	13	UNK	12455	chr17:73813607:+	C17orf77	23695	chr17:72586658:+	ONLY_REF_SPLICE	YES	21	0	0.55	1	0.1768	0.1768	{Klijn_CCL:Liver=1},UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,C17orf77->chr17:72580818-72590348:+,chromosome_17_open_reading_frame_77	JHH1_LIVER	0.55	1	0.3536	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	HSP90AB1--MT-RNR2	15	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2369	0	0.01	1	0.204	0.0136	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH1_LIVER	0.01	1	0.2176	FALSE	13	9	0	364	0	FALSE	ACH-000620
JHH1_LIVER	MT-TA--MT-TN	6	35	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0816	0.4761	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH1_LIVER	1	1	0.5577	FALSE	369	2501	205	193	0	FALSE	ACH-000620
JHH1_LIVER	UNK--C17orf77	10	18	UNK	13097	chr17:73814249:+	C17orf77	23695	chr17:72586658:+	ONLY_REF_SPLICE	YES	36	0	0.44	1	0.136	0.2448	{Klijn_CCL:Liver=1},UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,C17orf77->chr17:72580818-72590348:+,chromosome_17_open_reading_frame_77	JHH1_LIVER	0.44	1	0.3808	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	MT-TA--MT-TN	3	43	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0.5849	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH1_LIVER	1	1	0.6257	FALSE	369	2501	205	193	0	FALSE	ACH-000620
JHH1_LIVER	AGAP1--EXOSC3	12	6	AGAP1	10941	chr2:236659132:+	EXOSC3	42669	chr9:37784060:-	ONLY_REF_SPLICE	YES	28	181	0.39	0.09	0.1632	0.0816	AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,EXOSC3->chr9:37766975-37801434:-,exosome_component_3	JHH1_LIVER	0.09	0.39	0.2448	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	AGO2--STRN3	11	9	AGO2	17761	chr8:141554312:-	STRN3	40689	chr14:31381388:-	ONLY_REF_SPLICE	YES	38	55	0.34	0.27	0.1496	0.1224	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,STRN3->chr14:31363005-31495607:-,striatin_3	JHH1_LIVER	0.27	0.34	0.272	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	CA5BP1--GS1-594A7.3	13	0	CA5BP1	1641	chrX:15693695:+	GS1-594A7.3	15673	chrX:15639135:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1768	0	LOCAL_REARRANGEMENT:+:[53448],CA5BP1->carbonic_anhydrase_5B_pseudogene_1,chrX:15693055-15721847:+,GS1-594A7.3->chrX:15621004-15639607:+	JHH1_LIVER	1	1	0.1768	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	MT-TA--MT-TC	13	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1768	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHH1_LIVER	1	1	0.1768	FALSE	462	80	0	856	0	FALSE	ACH-000620
JHH1_LIVER	CLINT1--CTC-436K13.6	11	4	CLINT1	6469	chr5:157236636:-	CTC-436K13.6	20975	chr5:157661353:-	INCL_NON_REF_SPLICE	YES	317	0	0.05	1	0.1496	0.0544	CLINT1->chr5:157212751-157286183:-,clathrin_interactor_1,CTC-436K13.6->chr5:157652360-157661384:-	JHH1_LIVER	0.05	1	0.204	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	MT-ND6--MT-TE	10	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.136	0.1088	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH1_LIVER	1	1	0.2448	FALSE	499	1288	110	792	0	FALSE	ACH-000620
JHH1_LIVER	RPS11--RPL13A	7	19	RPS11	3966	chr19:50002847:+	RPL13A	9732	chr19:49994682:+	INCL_NON_REF_SPLICE	YES	46	5877	0.36	0	0.0952	0.2585	LOCAL_REARRANGEMENT:+:[4057],RPS11->chr19:49999622-50002946:+,ribosomal_protein_S11,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	JHH1_LIVER	0	0.36	0.3537	TRUE	0	0	0	1	0	FALSE	ACH-000620
JHH1_LIVER	MT-ATP6--MT-CO2	11	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	97	2	0.12	0.87	0.1496	0.0272	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHH1_LIVER	0.12	0.87	0.1768	FALSE	59	21	0	114	0	FALSE	ACH-000620
JHH1_LIVER	MT-ND6--MT-TE	5	25	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	30	0	0.5	1	0.068	0.3401	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH1_LIVER	0.5	1	0.4081	FALSE	499	1288	110	792	0	FALSE	ACH-000620
JHH1_LIVER	ERBB4--AC079610.1	10	1	ERBB4	3912	chr2:212989477:-	AC079610.1	50458	chr2:213446132:-	ONLY_REF_SPLICE	YES	31	0	0.26	1	0.136	0.0136	LOCAL_REARRANGEMENT:-:[42516],ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,AC079610.1->chr2:213446081-213886269:-	JHH1_LIVER	0.26	1	0.1496	TRUE	0	0	0	2	0	TRUE	ACH-000620
JHH1_LIVER	DENND4B--NUP210L	9	4	DENND4B	8766	chr1:153911376:-	NUP210L	45155	chr1:154027308:-	ONLY_REF_SPLICE	YES	30	0	0.3	1	0.1224	0.0544	{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:-:[45989],DENND4B->DENN_domain_containing_4B,chr1:153901977-153919172:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	JHH1_LIVER	0.3	1	0.1768	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	MT-TA--MT-TN	4	24	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0.3265	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH1_LIVER	1	1	0.3809	FALSE	369	2501	205	193	0	FALSE	ACH-000620
JHH1_LIVER	NRIP1--AF127936.7	9	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.59	1	0.1224	0.0136	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHH1_LIVER	0.59	1	0.136	FALSE	292	1546	117	613	0	FALSE	ACH-000620
JHH1_LIVER	NRIP1--AF127936.7	9	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.38	1	0.1224	0.0136	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHH1_LIVER	0.38	1	0.136	FALSE	125	705	46	456	0	FALSE	ACH-000620
JHH1_LIVER	MT-ND5--MT-CO3	5	15	MT-ND5	2794	chrM:14130:+	MT-CO3	5951	chrM:9345:+	INCL_NON_REF_SPLICE	NO	0	6780	1	0	0.068	0.204	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	JHH1_LIVER	0	1	0.272	FALSE	0	15	2	17	0	FALSE	ACH-000620
JHH1_LIVER	MT-ND6--MT-TE	3	23	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	33	0	0.44	1	0.0408	0.3129	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH1_LIVER	0.44	1	0.3537	FALSE	499	1288	110	792	0	FALSE	ACH-000620
JHH1_LIVER	MT-TA--MT-TC	7	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0952	0.0952	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHH1_LIVER	1	1	0.1904	FALSE	462	80	0	856	0	FALSE	ACH-000620
JHH1_LIVER	RP11-96H19.1--RP11-446N19.1	6	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.8	1	0.0816	0.136	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHH1_LIVER	0.8	1	0.2176	FALSE	407	2205	196	549	0	FALSE	ACH-000620
JHH1_LIVER	MT-ATP6--MT-CO2	8	1	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	89	2	0.09	0.82	0.1088	0.0136	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHH1_LIVER	0.09	0.82	0.1224	FALSE	59	21	0	114	0	FALSE	ACH-000620
JHH1_LIVER	MT-ND5--MT-CO3	4	15	MT-ND5	2797	chrM:14133:+	MT-CO3	5963	chrM:9357:+	INCL_NON_REF_SPLICE	YES	0	8503	1	0	0.0544	0.204	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	JHH1_LIVER	0	1	0.2584	FALSE	0	15	2	17	0	FALSE	ACH-000620
JHH1_LIVER	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0952	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	JHH1_LIVER	1	1	0.0952	TRUE	1	39	0	134	39	FALSE	ACH-000620
JHH1_LIVER	MT-ATP6--MT-CO2	7	0	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0952	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHH1_LIVER	1	1	0.0952	FALSE	59	21	0	114	0	FALSE	ACH-000620
JHH1_LIVER	MT-ND5--MT-CO3	5	8	MT-ND5	2591	chrM:13927:+	MT-CO3	6171	chrM:9565:+	INCL_NON_REF_SPLICE	YES	3529	15808	0	0	0.068	0.1088	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	JHH1_LIVER	0	0	0.1768	FALSE	0	15	2	18	0	FALSE	ACH-000620
JHH1_LIVER	MT-TA--MT-TN	7	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0952	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH1_LIVER	1	1	0.0952	FALSE	369	2501	205	193	0	FALSE	ACH-000620
JHH1_LIVER	RP11-96H19.1--RP11-446N19.1	6	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	2	0.71	0.83	0.0816	0.0544	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHH1_LIVER	0.71	0.83	0.136	FALSE	515	4851	409	746	0	FALSE	ACH-000620
JHH1_LIVER	WNK1--IQSEC3	5	7	WNK1	3905	chr12:922980:+	IQSEC3	49355	chr12:247433:+	ONLY_REF_SPLICE	YES	74	5	0.14	0.71	0.068	0.0952	{Klijn_CCL:Liver=1},WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,IQSEC3->IQ_motif_and_Sec7_domain_3,chr12:175931-287626:+	JHH1_LIVER	0.14	0.71	0.1632	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	SLC13A3--MORN1	6	0	SLC13A3	3341	chr20:45298682:-	MORN1	47942	chr1:2255582:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0816	0	SLC13A3->chr20:45186463-45304714:-,solute_carrier_family_13_member_3,MORN1->MORN_repeat_containing_1,chr1:2252692-2323146:-	JHH1_LIVER	1	1	0.0816	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	NRIP1--AF127936.7	5	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.32	1	0.068	0.0272	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHH1_LIVER	0.32	1	0.0952	FALSE	164	806	69	479	0	FALSE	ACH-000620
JHH1_LIVER	CCT6P1--VKORC1L1	3	9	CCT6P1	1137	chr7:65216265:+	VKORC1L1	16986	chr7:65419061:+	ONLY_REF_SPLICE	YES	6	77	0.67	0.13	0.0408	0.1224	CCT6P1->chaperonin_containing_TCP1_subunit_6_pseudogene_1,chr7:65216129-65228341:+,VKORC1L1->chr7:65338254-65424550:+,vitamin_K_epoxide_reductase_complex_subunit_1_like_1	JHH1_LIVER	0.13	0.67	0.1632	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	ABHD14A--AGR3	5	0	ABHD14A	5255	chr3:52012390:+	AGR3	14903	chr7:16901684:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.068	0	ABHD14A->abhydrolase_domain_containing_14A,chr3:52005442-52015212:+,AGR3->anterior_gradient_3,_protein_disulphide_isomerase_family_member,chr7:16899029-16921611:-	JHH1_LIVER	1	1	0.068	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	MT-ATP6--MT-CO2	5	0	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.068	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHH1_LIVER	1	1	0.068	FALSE	59	21	0	114	0	FALSE	ACH-000620
JHH1_LIVER	RP11-96H19.1--RP11-446N19.1	4	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	2	1	0.8	0.0544	0.0544	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHH1_LIVER	0.8	1	0.1088	FALSE	467	2173	244	435	0	FALSE	ACH-000620
JHH1_LIVER	AGO2--STRN3	2	11	AGO2	17761	chr8:141554312:-	STRN3	39426	chr14:31382863:-	ONLY_REF_SPLICE	YES	38	42	0.25	0.24	0.0272	0.1496	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,STRN3->chr14:31363005-31495607:-,striatin_3	JHH1_LIVER	0.24	0.25	0.1768	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	POFUT2--LINC00315	4	2	POFUT2	6936	chr21:46696932:-	LINC00315	20015	chr21:46720418:-	INCL_NON_REF_SPLICE	YES	59	0	0.09	1	0.0544	0.0272	LOCAL_REARRANGEMENT:-:[12347],POFUT2->chr21:46683843-46707813:-,protein_O-fucosyltransferase_2,LINC00315->chr21:46720160-46725172:-,long_intergenic_non-protein_coding_RNA_315	JHH1_LIVER	0.09	1	0.0816	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	AGO2--STRN3	1	12	AGO2	17761	chr8:141554312:-	STRN3	37174	chr14:31398517:-	ONLY_REF_SPLICE	NO	38	45	0.25	0.22	0.0136	0.1632	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,STRN3->chr14:31363005-31495607:-,striatin_3	JHH1_LIVER	0.22	0.25	0.1768	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	MT-ATP6--MT-CO2	4	0	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHH1_LIVER	1	1	0.0544	FALSE	59	21	0	114	0	FALSE	ACH-000620
JHH1_LIVER	MT-TA--MT-TN	4	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH1_LIVER	1	1	0.0544	FALSE	369	2501	205	193	0	FALSE	ACH-000620
JHH1_LIVER	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH1_LIVER	1	1	0.0544	FALSE	369	2501	205	193	0	FALSE	ACH-000620
JHH1_LIVER	AGO2--STRN3	1	11	AGO2	17761	chr8:141554312:-	STRN3	38285	chr14:31388312:-	ONLY_REF_SPLICE	YES	38	39	0.24	0.24	0.0136	0.1496	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,STRN3->chr14:31363005-31495607:-,striatin_3	JHH1_LIVER	0.24	0.24	0.1632	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	MT-ATP6--MT-CO2	3	2	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	100	1	0.05	0.83	0.0408	0.0272	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHH1_LIVER	0.05	0.83	0.068	FALSE	59	21	0	114	0	FALSE	ACH-000620
JHH1_LIVER	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0.136	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHH1_LIVER	1	1	0.1496	FALSE	192	492	57	212	0	FALSE	ACH-000620
JHH1_LIVER	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	4	0	0.73	1	0.0136	0.136	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHH1_LIVER	0.73	1	0.1496	FALSE	275	511	55	178	0	FALSE	ACH-000620
JHH1_LIVER	RPS11--RPL13A	3	2	RPS11	2198	chr19:50000819:+	RPL13A	9732	chr19:49994682:+	INCL_NON_REF_SPLICE	YES	4024	5877	0	0	0.0408	0.0272	LOCAL_REARRANGEMENT:+:[4057],RPS11->chr19:49999622-50002946:+,ribosomal_protein_S11,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	JHH1_LIVER	0	0	0.068	FALSE	0	0	0	1	0	FALSE	ACH-000620
JHH1_LIVER	SLC1A5--MT-ND4L	3	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	426	0	0.01	1	0.0408	0.0272	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH1_LIVER	0.01	1	0.068	FALSE	0	0	0	189	0	FALSE	ACH-000620
JHH1_LIVER	FOXK2--OR7E29P	3	1	FOXK2	1595	chr17:80478183:+	OR7E29P	25319	chr3:125431027:+	INCL_NON_REF_SPLICE	YES	14	0	0.22	1	0.0408	0.0136	FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,OR7E29P->chr3:125430983-125431889:+,olfactory_receptor_family_7_subfamily_E_member_29_pseudogene	JHH1_LIVER	0.22	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	MT-ATP6--MT-CO2	3	1	MT-ATP6	1141	chrM:8667:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	84	2	0.05	0.67	0.0408	0.0136	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHH1_LIVER	0.05	0.67	0.0544	FALSE	59	21	0	114	0	FALSE	ACH-000620
JHH1_LIVER	MT-ND5--MT-CO3	3	1	MT-ND5	1588	chrM:12924:+	MT-CO3	5815	chrM:9209:+	INCL_NON_REF_SPLICE	YES	4972	0	0	1	0.0408	0.0136	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	JHH1_LIVER	0	1	0.0544	FALSE	0	7	0	11	0	FALSE	ACH-000620
JHH1_LIVER	MT-ATP6--MT-CO2	3	0	MT-ATP6	1072	chrM:8598:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHH1_LIVER	1	1	0.0408	FALSE	59	21	0	114	0	FALSE	ACH-000620
JHH1_LIVER	MT-ATP6--MT-CO2	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHH1_LIVER	1	1	0.0408	FALSE	59	21	0	114	0	FALSE	ACH-000620
JHH1_LIVER	MT-ATP6--MT-CO2	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO2	4811	chrM:7715:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHH1_LIVER	1	1	0.0408	FALSE	59	21	0	114	0	FALSE	ACH-000620
JHH1_LIVER	MT-ND6--MT-TE	3	0	MT-ND6	1032	chrM:14642:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH1_LIVER	1	1	0.0408	FALSE	499	1288	110	792	0	FALSE	ACH-000620
JHH1_LIVER	FNDC3A--RP11-360F5.1	2	1	FNDC3A	4220	chr13:49649500:+	RP11-360F5.1	38901	chr4:39114873:-	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0272	0.0136	FNDC3A->chr13:49550048-49783915:+,fibronectin_type_III_domain_containing_3A,RP11-360F5.1->chr4:39114297-39128438:-	JHH1_LIVER	0.25	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	TMEM241--CATSPER1	2	1	TMEM241	4388	chr18:20979530:-	CATSPER1	32252	chr11:65790532:-	ONLY_REF_SPLICE	YES	12	0	0.2	1	0.0272	0.0136	TMEM241->chr18:20777108-21017925:-,transmembrane_protein_241,CATSPER1->cation_channel_sperm_associated_1,chr11:65784223-65793988:-	JHH1_LIVER	0.2	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	LAMB1--NRCAM	2	0	LAMB1	17269	chr7:107599694:-	NRCAM	76133	chr7:107790592:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	LAMB1->chr7:107564244-107643700:-,laminin_subunit_beta_1,NRCAM->Oncogene{Bushman},chr7:107788068-108097161:-,neuronal_cell_adhesion_molecule	JHH1_LIVER	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	SYNRG--EVX1	2	0	SYNRG	20601	chr17:35913217:-	EVX1	44743	chr7:27289767:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	{Klijn_CCL:Liver=1},SYNRG->chr17:35874900-35969544:-,synergin,_gamma,EVX1->chr7:27282164-27290112:+,even-skipped_homeobox_1	JHH1_LIVER	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000620
JHH1_LIVER	AGAP1--EXOSC3	1	2	AGAP1	9806	chr2:236653483:+	EXOSC3	42669	chr9:37784060:-	ONLY_REF_SPLICE	YES	56	181	0.05	0.02	0.0136	0.0272	AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,EXOSC3->chr9:37766975-37801434:-,exosome_component_3	JHH1_LIVER	0.02	0.05	0.0408	TRUE	0	0	0	1	0	FALSE	ACH-000620
JHH1_LIVER	GOSR1--MBTD1	1	1	GOSR1	10351	chr17:28819771:+	MBTD1	41636	chr17:49258055:-	ONLY_REF_SPLICE	YES	49	26	0.04	0.07	0.0136	0.0136	GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	JHH1_LIVER	0.04	0.07	0.0272	TRUE	0	0	0	2	0	FALSE	ACH-000620
JHH1_LIVER	NIN--PYGL	1	1	NIN	7017	chr14:51259430:-	PYGL	53211	chr14:51387785:-	ONLY_REF_SPLICE	NO	46	182	0.04	0.01	0.0136	0.0136	LOCAL_REARRANGEMENT:-:[26770],NIN->Oncogene{Bushman},chr14:51186481-51297839:-,ninein,PYGL->chr14:51324609-51411454:-,phosphorylase,_glycogen,_liver	JHH1_LIVER	0.01	0.04	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000620
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	USP49--MRPS10	563	206	USP49	9000	chr6:41839302:-	MRPS10	28922	chr6:42179655:-	ONLY_REF_SPLICE	YES	2	200	1	0.79	5.9424	2.1743	USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.79	1	8.1167	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	USP49--MRPS10	291	302	USP49	9000	chr6:41839302:-	MRPS10	27697	chr6:42182082:-	ONLY_REF_SPLICE	YES	2	0	1	1	3.0715	3.1876	USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	6.2591	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	101	23	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	1.0661	0.2428	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.99	1	1.3089	TRUE	458	1351	185	561	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	TOM1L2--FLII	81	38	TOM1L2	2246	chr17:17810761:-	FLII	33325	chr17:18155870:-	ONLY_REF_SPLICE	YES	47	146	0.72	0.45	0.855	0.4011	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,FLII->Oncogene{Bushman},chr17:18148150-18162230:-,flightless_I_actin_binding_protein	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.45	0.72	1.2561	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	USP49--MRPS10	70	72	USP49	9000	chr6:41839302:-	MRPS10	30059	chr6:42178334:-	ONLY_REF_SPLICE	YES	2	247	0.99	0.37	0.7388	0.76	USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.37	0.99	1.4988	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	79	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8338	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.8338	TRUE	402	216	10	229	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	65	10	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6861	0.1055	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.7916	TRUE	508	994	45	981	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	50	13	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	37	1	0.63	0.5277	0.1372	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.63	1	0.6649	TRUE	465	1949	224	605	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	PHTF2--AC002454.1	49	8	PHTF2	1167	chr7:77428288:+	AC002454.1	33770	chr7:92546151:+	ONLY_REF_SPLICE	YES	37	0	0.61	1	0.5172	0.0844	PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2,AC002454.1->chr7:92465797-92546501:+	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.61	1	0.6016	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	48	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5066	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.5066	TRUE	0	0	0	518	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	FRS2--RP11-43N5.1	41	15	FRS2	1182	chr12:69864310:+	RP11-43N5.1	26123	chr12:68112321:-	ONLY_REF_SPLICE	YES	15	3	0.79	0.95	0.4328	0.1583	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RP11-43N5.1->chr12:68102827-68123255:-	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.79	0.95	0.5911	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	41	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	193	1	0.18	0.98	0.4328	0.0211	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.18	0.98	0.4539	TRUE	519	3926	326	965	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	MDM2--TAF8	33	2	MDM2	14649	chr12:69234477:+	TAF8	33847	chr6:42045821:+	INCL_NON_REF_SPLICE	YES	628	124	0.05	0.22	0.3483	0.0211	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,TAF8->TATA-box_binding_protein_associated_factor_8,chr6:42018251-42055199:+	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.05	0.22	0.3694	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	USP49--MRPS10	2	83	USP49	3511	chr6:41859532:-	MRPS10	27697	chr6:42182082:-	ONLY_REF_SPLICE	YES	9	0	0.9	1	0.0211	0.8761	USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.8972	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	20	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2111	0.0317	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.2428	TRUE	477	1352	189	275	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	USP49--MRPS10	4	61	USP49	3511	chr6:41859532:-	MRPS10	28922	chr6:42179655:-	ONLY_REF_SPLICE	YES	9	200	0.88	0.25	0.0422	0.6439	USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.25	0.88	0.6861	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	19	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2005	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.2005	FALSE	499	1288	110	792	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	16	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1689	0.0106	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.1795	FALSE	499	1288	110	792	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	10	20	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1055	0.2111	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.97	1	0.3166	FALSE	499	1288	110	792	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	MDM2--TAF8	11	0	MDM2	14328	chr12:69234156:+	TAF8	37366	chr6:42049340:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1161	0	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,TAF8->TATA-box_binding_protein_associated_factor_8,chr6:42018251-42055199:+	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1161	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	USP49--MRPS10	1	36	USP49	9000	chr6:41839302:-	MRPS10	31168	chr6:42176685:-	ONLY_REF_SPLICE	YES	2	383	0.95	0.09	0.0106	0.38	USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.09	0.95	0.3906	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	9	1	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	23	30	0.3	0.25	0.095	0.0106	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.25	0.3	0.1056	TRUE	267	562	48	632	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	5	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	26	28	0.3	0.28	0.0528	0.0633	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.28	0.3	0.1161	TRUE	267	562	48	632	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	AP000525.9--LA16c-60G3.6	6	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0633	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0633	TRUE	0	42	0	133	42	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0633	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0633	FALSE	13	9	0	364	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	COL1A1--NPM1	3	9	COL1A1	13029	chr17:48266746:-	NPM1	22878	chr5:170814872:+	INCL_NON_REF_SPLICE	YES	3484	1	0	0.92	0.0317	0.095	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0	0.92	0.1267	TRUE	0	0	0	31	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0317	0.095	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.1267	FALSE	499	1288	110	792	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	USP49--MRPS10	1	17	USP49	3511	chr6:41859532:-	MRPS10	30059	chr6:42178334:-	ONLY_REF_SPLICE	NO	9	247	0.67	0.07	0.0106	0.1794	USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.07	0.67	0.19	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0528	FALSE	13	9	0	364	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0528	TRUE	0	0	0	518	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	FRS2--RP11-43N5.1	1	15	FRS2	1182	chr12:69864310:+	RP11-43N5.1	24788	chr12:68116493:-	ONLY_REF_SPLICE	YES	15	0	0.52	1	0.0106	0.1583	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RP11-43N5.1->chr12:68102827-68123255:-	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.52	1	0.1689	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	5	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0.0528	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0845	FALSE	499	1288	110	792	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0422	TRUE	22	156	2	142	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	CCND3--MT-CO3	3	1	CCND3	9709	chr6:41905044:-	MT-CO3	15146	chrM:9270:+	INCL_NON_REF_SPLICE	YES	4771	0	0	1	0.0317	0.0106	CCND3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:41902671-42018095:-,cyclin_D3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0	1	0.0423	FALSE	0	0	0	1	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--CAND1	3	1	RP11-123O10.4	1113	chr12:67462830:-	CAND1	7708	chr12:67675690:+	ONLY_REF_SPLICE	YES	0	106	1	0.04	0.0317	0.0106	RP11-123O10.4->chr12:67285656-67462942:-,CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	COL1A1--EIF4H	3	0	COL1A1	6825	chr17:48272950:-	EIF4H	28702	chr7:73610527:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,EIF4H->chr7:73588575-73611431:+,eukaryotic_translation_initiation_factor_4H	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	CSRNP2--ATP10D	3	0	CSRNP2	9609	chr12:51457039:-	ATP10D	14674	chr4:47487320:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	CSRNP2->chr12:51454990-51477447:-,cysteine_and_serine_rich_nuclear_protein_2,ATP10D->ATPase_phospholipid_transporting_10D_(putative),chr4:47487305-47595503:+	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	CTC-786C10.1--GSE1	1	7	CTC-786C10.1	1532	chr16:85205413:+	GSE1	8143	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0106	0.0739	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.0845	TRUE	5	1	0	10	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	FAM133B--CPM	1	7	FAM133B	8312	chr7:92205085:-	CPM	21869	chr12:69279669:-	ONLY_REF_SPLICE	YES	1164	10	0.01	0.44	0.0106	0.0739	FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B,CPM->carboxypeptidase_M,chr12:69235977-69365350:-	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.01	0.44	0.0845	FALSE	0	0	0	1	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0.0211	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0422	TRUE	274	363	69	150	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	FAM133B--CPM	1	5	FAM133B	6676	chr7:92206969:-	CPM	35183	chr12:69236109:-	ONLY_REF_SPLICE	YES	1499	0	0	1	0.0106	0.0528	FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B,CPM->carboxypeptidase_M,chr12:69235977-69365350:-	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0	1	0.0634	FALSE	0	0	0	1	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	MELK--GLIPR2	2	1	MELK	2433	chr9:36581736:+	GLIPR2	33207	chr9:36162359:+	ONLY_REF_SPLICE	YES	138	274	0.02	0.01	0.0211	0.0106	MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,GLIPR2->GLI_pathogenesis_related_2,chr9:36136732-36163910:+	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0317	FALSE	0	0	0	1	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0.0106	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0317	FALSE	515	4851	409	746	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	CPSF6--TNC	2	0	CPSF6	11046	chr12:69656342:+	TNC	56377	chr9:117783546:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,TNC->Oncogene{Bushman},chr9:117782806-117880536:-,tenascin_C	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	CYP51A1--CHMP1A	2	0	CYP51A1	11934	chr7:91746358:-	CHMP1A	22405	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CYP51A1->chr7:91741465-91772266:-,cytochrome_P450_family_51_subfamily_A_member_1,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	FAM133B--CPM	1	4	FAM133B	6012	chr7:92207633:-	CPM	21869	chr12:69279669:-	ONLY_REF_SPLICE	YES	1984	10	0	0.33	0.0106	0.0422	FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B,CPM->carboxypeptidase_M,chr12:69235977-69365350:-	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0	0.33	0.0528	FALSE	0	0	0	1	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	RNF152--RP11-879F14.1	2	0	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	FALSE	275	472	65	43	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	SPHK2--PPP1R13L	2	0	SPHK2	2263	chr19:49123810:+	PPP1R13L	23218	chr19:45889438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SPHK2->chr19:49122548-49133974:+,sphingosine_kinase_2,PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	TADA2B--SORCS2	2	0	TADA2B	2647	chr4:7045576:+	SORCS2	14461	chr4:7398015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_FI:{Brain=[count:74=pct:11.2],Blood_Vessel=[count:12=pct:3.3],Nerve=[count:8=pct:4.7],Muscle=[count:6=pct:2.6],Pancreas=[count:5=pct:2.8],Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:3=pct:5.7],Breast=[count:2=pct:1.8],Skin=[count:2=pct:0.6],Thyroid=[count:2=pct:1.1],Colon=[count:2=pct:1.0],Uterus=[count:2=pct:4.7],Testis=[count:1=pct:1.0],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},TADA2B->chr4:7043626-7059679:+,transcriptional_adaptor_2B,SORCS2->chr4:7194265-7744554:+,sortilin_related_VPS10_domain_containing_receptor_2	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	95	84	3	6	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	MDM2--USP49	1	2	MDM2	10304	chr12:69222711:+	USP49	24816	chr6:41859613:-	ONLY_REF_SPLICE	NO	1634	12	0	0.2	0.0106	0.0211	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0	0.2	0.0317	FALSE	0	0	0	1	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	FLNA--GAPDH	1	1	FLNA	18117	chrX:153580549:-	GAPDH	25658	chr12:6643976:+	ONLY_REF_SPLICE	YES	1628	43	0	0.04	0.0106	0.0106	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.11%,FLNA->chrX:153576892-153603006:-,filamin_A,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0	0.04	0.0212	FALSE	0	0	0	2	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	MDM2--USP49	1	1	MDM2	10304	chr12:69222711:+	USP49	27781	chr6:41841977:-	ONLY_REF_SPLICE	NO	1634	10	0	0.17	0.0106	0.0106	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0	0.17	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	MELK--GLIPR2	1	1	MELK	3519	chr9:36583709:+	GLIPR2	33207	chr9:36162359:+	ONLY_REF_SPLICE	YES	132	274	0.01	0.01	0.0106	0.0106	MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,GLIPR2->GLI_pathogenesis_related_2,chr9:36136732-36163910:+	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	MKL2--PARN	1	1	MKL2	4491	chr16:14234617:+	PARN	69626	chr16:14576684:-	ONLY_REF_SPLICE	YES	26	54	0.07	0.04	0.0106	0.0106	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Cortex=1},MKL2->MKL1/myocardin_like_2,chr16:14165178-14360630:+,PARN->chr16:14529558-14726585:-,poly(A)-specific_ribonuclease	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.04	0.07	0.0212	TRUE	0	1	0	1	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	12	0.67	0.14	0.0106	0.0106	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	0.14	0.67	0.0212	FALSE	16	356	14	466	0	FALSE	ACH-000329
CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0106	0.0106	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CCFSTTG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0212	FALSE	407	2205	196	549	0	FALSE	ACH-000329
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV3--TRAJ5	1152	65	TRAV3	1610	chr14:22192569:+	TRAJ5	4611	chr14:23009191:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	11.7127	0.6609	HGNC_GENEFAM,TRAV3->T_cell_receptor_alpha_variable_3_(gene/pseudogene),chr14:22191960-22192568:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	12.3736	TRUE	1	2	0	2	2	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	158	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.6064	0.2237	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.8301	TRUE	508	994	45	981	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	105	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0676	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0676	FALSE	369	2501	205	193	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	88	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	128	2	0.42	0.98	0.8947	0.0305	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.98	0.9252	TRUE	519	3926	326	965	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRGV8--HELLS	79	0	TRGV8	1587	chr7:38369950:-	HELLS	32836	chr10:96371997:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8032	0	TRGV8->T_cell_receptor_gamma_variable_8,chr7:38369944-38370536:-,HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8032	TRUE	0	0	0	1	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	49	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4982	0.0407	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5389	FALSE	462	80	0	856	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	47	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4779	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4779	TRUE	0	0	0	518	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	37	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.3762	0.0305	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.4067	FALSE	499	1288	110	792	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-499F3.2--TYW1	35	0	RP11-499F3.2	1198	chr15:82163269:-	TYW1	23788	chr7:66648113:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3559	0	RP11-499F3.2->chr15:81952823-82163466:-,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3559	TRUE	1	3	0	7	3	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	23	22	AC104820.2	16783	chr2:182227645:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	12	183	0.79	0.2	0.2338	0.2237	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.79	0.4575	FALSE	0	0	0	16	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	14	53	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1423	0.5389	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6812	FALSE	369	2501	205	193	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV3--TRAC	4	90	TRAV3	1427	chr14:22192386:+	TRAC	4610	chr14:23016447:+	INCL_NON_REF_SPLICE	YES	605	0	0.13	1	0.0407	0.9151	HGNC_GENEFAM,TRAV3->T_cell_receptor_alpha_variable_3_(gene/pseudogene),chr14:22191960-22192568:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.9558	TRUE	1	20	1	2	20	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	14	35	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1423	0.3559	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4982	FALSE	369	2501	205	193	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV3--TRAJ5	3	65	TRAV3	1608	chr14:22192567:+	TRAJ5	4609	chr14:23009189:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0.6609	HGNC_GENEFAM,TRAV3->T_cell_receptor_alpha_variable_3_(gene/pseudogene),chr14:22191960-22192568:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6914	TRUE	1	2	0	2	2	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	17	8	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	12	192	0.68	0.12	0.1728	0.0813	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.68	0.2541	FALSE	0	0	0	19	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	18	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.183	0.0305	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2135	FALSE	499	1288	110	792	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	14	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1423	0.122	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2643	FALSE	499	1288	110	792	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	17	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1728	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1728	FALSE	369	2501	205	193	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	17	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1728	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1728	FALSE	369	2501	205	193	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	9	21	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0915	0.2135	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.305	FALSE	369	2501	205	193	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	9	18	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0915	0.183	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2745	FALSE	369	2501	205	193	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV3--TRAC	7	25	TRAV3	1222	chr14:22192181:+	TRAC	4610	chr14:23016447:+	ONLY_REF_SPLICE	YES	860	0	0.04	1	0.0712	0.2542	HGNC_GENEFAM,TRAV3->T_cell_receptor_alpha_variable_3_(gene/pseudogene),chr14:22191960-22192568:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.3254	TRUE	1	20	1	2	20	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	32	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0.3254	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3661	FALSE	369	2501	205	193	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	8	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0813	0.0407	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.122	FALSE	462	80	0	856	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	6	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	60	21	0.19	0.4	0.061	0.0813	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.4	0.1423	TRUE	267	562	48	632	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	7	2	AC104820.2	8902	chr2:182127704:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	57	192	0.14	0.04	0.0712	0.0203	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.14	0.0915	FALSE	0	0	0	11	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	16	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0.1627	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1932	FALSE	499	1288	110	792	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0712	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0712	FALSE	462	80	0	856	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP53--PCED1B-AS1	7	0	RPL23AP53	2207	chr8:180804:-	PCED1B-AS1	9973	chr12:47604520:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0712	0	RPL23AP53->chr8:163186-182231:-,ribosomal_protein_L23a_pseudogene_53,PCED1B-AS1->PCED1B_antisense_RNA_1,chr12:47599681-47610239:-	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0712	TRUE	0	0	0	3	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	5	7	MTAP	18287	chr9:21866841:+	CDKN2B-AS1	38778	chr9:22096371:+	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.0508	0.0712	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.122	FALSE	0	0	0	1	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	6	3	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	35	0	0.2	1	0.061	0.0305	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.0915	FALSE	272	151	14	158	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.061	FALSE	499	1288	110	792	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.061	FALSE	369	2501	205	193	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	5	3	MTAP	18287	chr9:21866841:+	CDKN2B-AS1	40771	chr9:22112319:+	INCL_NON_REF_SPLICE	YES	3	1	0.73	0.89	0.0508	0.0305	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.89	0.0813	FALSE	0	1	0	2	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	5	2	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	30	192	0.19	0.04	0.0508	0.0203	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.19	0.0711	FALSE	0	1	0	18	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0508	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0508	FALSE	13	9	0	364	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-TL1	3	6	MT-ND1	1341	chrM:3647:+	MT-TL1	5012	chrM:3285:+	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0305	0.061	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.0915	FALSE	210	95	5	49	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLDC1--COTL1	4	1	TLDC1	1088	chr16:84587552:-	COTL1	24450	chr16:84623868:-	ONLY_REF_SPLICE	YES	26	373	0.16	0.01	0.0407	0.0102	LOCAL_REARRANGEMENT:-:[11561],TLDC1->TBC/LysM-associated_domain_containing_1,chr16:84511681-84587639:-,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.16	0.0509	FALSE	0	1	0	3	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0407	FALSE	13	9	0	364	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0407	FALSE	369	2501	205	193	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--CNN2	4	0	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0407	TRUE	35	34	3	30	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAJ9--TRAV12-1	4	0	TRAJ9	1061	chr14:23004562:+	TRAV12-1	4309	chr14:22309669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	HGNC_GENEFAM,TRAJ9->T_cell_receptor_alpha_joining_9,chr14:23004502-23004562:+,TRAV12-1->T_cell_receptor_alpha_variable_12-1,chr14:22309422-22309956:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	9	AC104820.2	16783	chr2:182227645:+	ITGA4	22959	chr2:182322923:+	ONLY_REF_SPLICE	NO	12	247	0.45	0.04	0.0102	0.0915	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.45	0.1017	FALSE	0	0	0	16	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	1	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0.0102	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0407	FALSE	462	80	0	856	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0305	FALSE	499	1288	110	792	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0305	FALSE	499	1288	110	792	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0305	FALSE	499	1288	110	792	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-565E6.1--HYDIN	3	0	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0305	TRUE	456	1387	91	133	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	2	2	AC104820.2	15551	chr2:182219070:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	54	192	0.07	0.02	0.0203	0.0203	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.07	0.0406	FALSE	0	0	0	2	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	24436	chr10:114650725:+	ONLY_REF_SPLICE	YES	35	0	0.1	1	0.0203	0.0203	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.0406	FALSE	21	3	0	16	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--TUBGCP6	2	1	ZNF738	7035	chr19:21558766:+	TUBGCP6	27009	chr22:50658444:-	ONLY_REF_SPLICE	YES	55	66	0.05	0.04	0.0203	0.0102	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.05	0.0305	TRUE	1	0	0	1	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC6--SMARCA2	2	0	CCDC6	1535	chr10:61665880:-	SMARCA2	55788	chr9:2161686:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,SMARCA2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_2,chr9:2015342-2193624:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNAB2--RPL22	2	0	KCNAB2	7114	chr1:6086505:+	RPL22	41694	chr1:6257816:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_INVERSION:+:-:[80076],KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCK1--MSL2	2	0	NCK1	1112	chr3:136581161:+	MSL2	18208	chr3:135871580:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=2;pct=0.02%;dist=Muscle_-_Skeletal=1,Spleen=1},NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila)	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	2	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFA6--U2AF1	2	0	NDUFA6	1350	chr22:42486610:-	U2AF1	17577	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	NDUFA6->NADH:ubiquinone_oxidoreductase_subunit_A6,chr22:42481529-42486959:-,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POU2F1--RCSD1	2	0	POU2F1	1130	chr1:167190195:+	RCSD1	51671	chr1:167653137:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,RCSD1->RCSD_domain_containing_1,chr1:167599330-167675486:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	2	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTDSS2--PPP1R12C	2	0	PTDSS2	8895	chr11:479152:+	PPP1R12C	28472	chr19:55607703:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	PTDSS2->chr11:448268-491393:+,phosphatidylserine_synthase_2,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRCAP--SRSF1	2	0	PTPRCAP	1451	chr11:67205088:-	SRSF1	8598	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	PTPRCAP->chr11:67202981-67205538:-,protein_tyrosine_phosphatase,_receptor_type_C_associated_protein,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP53--PCED1B-AS1	2	0	RPL23AP53	2207	chr8:180804:-	PCED1B-AS1	13734	chr12:47599928:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	RPL23AP53->chr8:163186-182231:-,ribosomal_protein_L23a_pseudogene_53,PCED1B-AS1->PCED1B_antisense_RNA_1,chr12:47599681-47610239:-	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	2	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRRT--GINS1	2	0	SRRT	1601	chr7:100473333:+	GINS1	16460	chr20:25394426:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	SRRT->chr7:100472733-100486285:+,serrate,_RNA_effector_molecule,GINS1->GINS_complex_subunit_1,chr20:25388363-25433264:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	5	8	0	33	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--CTBP1	2	0	UVSSA	7499	chr4:1349033:+	CTBP1	24040	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	23	5	0	14	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--CTBP1	2	0	UVSSA	7499	chr4:1349033:+	CTBP1	32260	chr4:1222131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	3	2	0	5	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	1	2	MTAP	12211	chr9:21859424:+	CDKN2B-AS1	38778	chr9:22096371:+	ONLY_REF_SPLICE	NO	78	0	0.04	1	0.0102	0.0203	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0305	FALSE	0	1	0	2	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	YES	35	0	0.08	1	0.0102	0.0203	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0305	FALSE	28	14	1	23	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--ACSF3	1	1	CBFA2T3	2733	chr16:89023999:-	ACSF3	25472	chr16:89164999:+	ONLY_REF_SPLICE	YES	27	85	0.07	0.02	0.0102	0.0102	CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,ACSF3->acyl-CoA_synthetase_family_member_3,chr16:89154783-89222254:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.07	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--CHMP1A	1	1	CHD2	6529	chr15:93444529:+	CHMP1A	64627	chr16:89713739:-	ONLY_REF_SPLICE	YES	67	117	0.03	0.02	0.0102	0.0102	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Thyroid=[count:2=pct:1.1],Brain=[count:1=pct:0.2]},GTEx_v2:{count=10;pct=0.12%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Whole_Blood=2,Breast_-_Mammary_Tissue=1,Brain_-_Hypothalamus=1,Thyroid=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0204	TRUE	2	11	0	5	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM168A--MRPL48	1	1	FAM168A	1267	chr11:73308968:-	MRPL48	23522	chr11:73516072:+	ONLY_REF_SPLICE	YES	37	81	0.05	0.02	0.0102	0.0102	FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A,MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GATS--PILRB	1	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	15	105	0.12	0.02	0.0102	0.0102	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.12	0.0204	TRUE	57	41	2	35	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR2--DHX34	1	1	GLTSCR2	1262	chr19:48249040:+	DHX34	29491	chr19:47885237:+	ONLY_REF_SPLICE	YES	1733	19	0	0.1	0.0102	0.0102	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:2=pct:3.8],Breast=[count:2=pct:1.8],Cervix_Uteri=[count:1=pct:12.5],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=4;pct=0.05%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hippocampus=1,Whole_Blood=1,Spleen=1},GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.1	0.0204	FALSE	14	43	2	13	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	1	1	MTAP	11005	chr9:21856222:+	CDKN2B-AS1	38778	chr9:22096371:+	ONLY_REF_SPLICE	NO	59	0	0.03	1	0.0102	0.0102	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000918
MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	1	1	MTAP	9899	chr9:21854869:+	CDKN2B-AS1	38778	chr9:22096371:+	ONLY_REF_SPLICE	YES	51	0	0.04	1	0.0102	0.0102	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	MOLT16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0204	FALSE	0	0	0	3	0	FALSE	ACH-000918
LS180_LARGE_INTESTINE	CYB561A3--CXCL16	57	0	CYB561A3	5097	chr11:61125675:-	CXCL16	22184	chr17:4637289:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7422	0	GTEx&tcga_normals:41/3694=1.11%,GTEx_FI:{Lung=[count:16=pct:9.6],Blood=[count:10=pct:5.7],Spleen=[count:10=pct:8.9],Whole_Blood=[count:8=pct:6.1],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Liver=[count:2=pct:1.7],Breast=[count:2=pct:1.8],Esophagus=[count:2=pct:0.5],Stomach=[count:1=pct:1.1],Salivary_Gland=[count:1=pct:2.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=17;pct=0.20%;dist=Whole_Blood=5,Lung=4,Spleen=4,Artery_-_Aorta=1,Brain_-_Hippocampus=1,Artery_-_Coronary=1,Liver=1},CYB561A3->chr11:61116217-61129771:-,cytochrome_b561_family_member_A3,CXCL16->C-X-C_motif_chemokine_ligand_16,chr17:4636821-4643217:-	LS180_LARGE_INTESTINE	1	1	0.7422	TRUE	43	61	0	4	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	TIMM23B--LINC00843	48	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.97	0.625	0.3516	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LS180_LARGE_INTESTINE	0.97	1	0.9766	TRUE	508	994	45	981	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	TIMM23--RP11-464F9.1	36	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	290	10	0.12	0.8	0.4687	0.0521	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LS180_LARGE_INTESTINE	0.12	0.8	0.5208	TRUE	519	3926	326	965	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	GPHN--MPP5	30	25	GPHN	5216	chr14:67147903:+	MPP5	51207	chr14:67779244:+	ONLY_REF_SPLICE	YES	57	45	0.49	0.55	0.3906	0.3255	NEIGHBORS[59306],GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5	LS180_LARGE_INTESTINE	0.49	0.55	0.7161	FALSE	0	0	0	1	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	OR51S1--TP53I11	32	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4167	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	LS180_LARGE_INTESTINE	1	1	0.4167	TRUE	402	216	10	229	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	ZNF654--HMGB2	19	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2474	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LS180_LARGE_INTESTINE	1	1	0.2474	TRUE	0	0	0	518	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	18	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	11824	9	0	0.69	0.2344	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	0.69	0.2604	FALSE	230	193	14	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	SAMD5--SASH1	17	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2214	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	LS180_LARGE_INTESTINE	1	1	0.2214	TRUE	53	396	64	110	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND6--MT-TE	16	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2083	0.026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS180_LARGE_INTESTINE	1	1	0.2343	FALSE	499	1288	110	792	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-TA--MT-TC	16	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2083	0.026	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS180_LARGE_INTESTINE	1	1	0.2343	FALSE	462	80	0	856	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	14	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11890	10	0	0.62	0.1823	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	0.62	0.2083	FALSE	230	198	14	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	RCC1--CTD-2354A18.1	14	0	RCC1	2175	chr1:28834672:+	CTD-2354A18.1	21770	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1823	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CTD-2354A18.1->chr18:70992176-71017113:+	LS180_LARGE_INTESTINE	1	1	0.1823	TRUE	0	1	0	7	0	TRUE	ACH-000957
LS180_LARGE_INTESTINE	HSPBP1--GRK5	12	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1562	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	LS180_LARGE_INTESTINE	1	1	0.1562	TRUE	1	39	0	134	39	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	18	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14446	84	0	0.23	0.0911	0.2344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	0.23	0.3255	FALSE	231	217	16	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	26	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	4607	0	0.01	1	0.0651	0.3385	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0.01	1	0.4036	FALSE	222	212	16	282	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-CO1--MT-RNR2	8	13	MT-CO1	1653	chrM:6556:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	25777	0	0	1	0.1042	0.1693	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LS180_LARGE_INTESTINE	0	1	0.2735	FALSE	44	51	6	21	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ATP6--MT-CO1	10	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1302	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LS180_LARGE_INTESTINE	1	1	0.1302	FALSE	183	104	9	328	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	18	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15792	84	0	0.21	0.0651	0.2344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	0.21	0.2995	FALSE	231	217	16	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	22	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	16067	0	0	1	0.0521	0.2865	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	1	0.3386	FALSE	231	217	16	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	C15orf57--CBX3	6	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	95	31	0.17	0.38	0.0781	0.1693	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LS180_LARGE_INTESTINE	0.17	0.38	0.2474	TRUE	267	562	48	632	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	16	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16245	10	0	0.68	0.0651	0.2083	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	0.68	0.2734	FALSE	231	217	16	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	24	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	16104	0	0	1	0.0391	0.3125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	1	0.3516	FALSE	231	217	16	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND6--MT-TE	8	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.1042	0.0521	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS180_LARGE_INTESTINE	0.92	1	0.1563	FALSE	499	1288	110	792	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	SLC12A2--EIF5A	9	0	SLC12A2	1749	chr5:127420206:+	EIF5A	38654	chr17:7210988:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1172	0	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A	LS180_LARGE_INTESTINE	1	1	0.1172	TRUE	0	0	0	2	0	TRUE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	22	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	15204	0	0	1	0.0391	0.2865	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	1	0.3256	FALSE	231	217	16	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	7	6	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0911	0.0781	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	LS180_LARGE_INTESTINE	1	1	0.1692	FALSE	81	155	12	160	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	PFKL--MT-ND4L	7	5	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	962	0	0.01	1	0.0911	0.0651	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS180_LARGE_INTESTINE	0.01	1	0.1562	FALSE	0	0	0	33	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ATP6--MT-CO1	8	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1042	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LS180_LARGE_INTESTINE	1	1	0.1042	FALSE	183	104	9	328	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	20	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	16153	0	0	1	0.0391	0.2604	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	1	0.2995	FALSE	231	217	16	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MICAL3--ATP6V1E1	7	3	MICAL3	2388	chr22:18484159:-	ATP6V1E1	65224	chr22:18102292:-	ONLY_REF_SPLICE	YES	12	437	0.45	0.02	0.0911	0.0391	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,ATP6V1E1->ATPase_H+_transporting_V1_subunit_E1,chr22:18074902-18111584:-	LS180_LARGE_INTESTINE	0.02	0.45	0.1302	TRUE	0	1	0	1	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	15	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	19089	784	0	0.02	0.0521	0.1953	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	0.02	0.2474	FALSE	231	217	16	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	19	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	16205	0	0	1	0.0391	0.2474	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	1	0.2865	FALSE	231	217	16	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	19	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13894	84	0	0.21	0.0391	0.2474	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	0.21	0.2865	FALSE	231	215	16	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	18	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	14446	231	0	0.08	0.0391	0.2344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	0.08	0.2735	FALSE	231	217	16	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	FTH1--ACTG1	7	1	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	7149	4	0	0.67	0.0911	0.013	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	LS180_LARGE_INTESTINE	0	0.67	0.1041	TRUE	0	0	0	64	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MUC6--MT-ND4	6	4	MUC6	17195	chr11:1016887:-	MT-ND4	23888	chrM:11146:+	INCL_NON_REF_SPLICE	YES	4003	17472	0	0	0.0781	0.0521	MUC6->Oncogene{Bushman},chr11:1012821-1036706:-,mucin_6,_oligomeric_mucus/gel-forming,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	LS180_LARGE_INTESTINE	0	0	0.1302	FALSE	0	0	0	2	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	15	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18724	84	0	0.18	0.0391	0.1953	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	0.18	0.2344	FALSE	231	217	16	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND6--MT-TE	6	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0781	0.026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS180_LARGE_INTESTINE	1	1	0.1041	FALSE	499	1288	110	792	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	SLC1A5--MT-ND4L	6	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	716	0	0.01	1	0.0781	0.026	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS180_LARGE_INTESTINE	0.01	1	0.1041	FALSE	0	0	0	189	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	4	MT-ND4	1294	chrM:11053:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	15218	7	0	0.56	0.0651	0.0521	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	0.56	0.1172	FALSE	231	205	14	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-CO1--MT-RNR2	3	11	MT-CO1	1642	chrM:6545:+	MT-RNR2	5587	chrM:1715:+	INCL_NON_REF_SPLICE	YES	24731	0	0	1	0.0391	0.1432	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LS180_LARGE_INTESTINE	0	1	0.1823	FALSE	44	51	6	21	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MUC6--MT-ND4	3	11	MUC6	17175	chr11:1016907:-	MT-ND4	23488	chrM:10746:+	INCL_NON_REF_SPLICE	YES	4327	0	0	1	0.0391	0.1432	MUC6->Oncogene{Bushman},chr11:1012821-1036706:-,mucin_6,_oligomeric_mucus/gel-forming,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	LS180_LARGE_INTESTINE	0	1	0.1823	FALSE	0	0	0	2	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11824	10	0	0.41	0.0651	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	0.41	0.0911	FALSE	230	193	14	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	C15orf57--CBX3	3	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	93	32	0.11	0.27	0.0391	0.1172	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LS180_LARGE_INTESTINE	0.11	0.27	0.1563	TRUE	267	562	48	632	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	9	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	17025	0	0	1	0.0391	0.1172	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	1	0.1563	FALSE	231	217	16	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	SLC12A2--EIF5A	5	0	SLC12A2	1511	chr5:127419968:+	EIF5A	38672	chr17:7211006:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A	LS180_LARGE_INTESTINE	1	1	0.0651	TRUE	0	0	0	2	0	TRUE	ACH-000957
LS180_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0521	0.0391	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LS180_LARGE_INTESTINE	0.78	1	0.0912	FALSE	515	4851	409	746	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	2	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	13569	22931	0	0	0.0521	0.026	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LS180_LARGE_INTESTINE	0	0	0.0781	FALSE	183	104	9	328	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	2	MT-ND4	1244	chrM:11003:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	11970	784	0	0.01	0.0521	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	0.01	0.0781	FALSE	231	204	14	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11900	84	0	0.07	0.0521	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	0.07	0.0781	FALSE	230	198	14	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14024	10	0	0.38	0.0521	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	0.38	0.0781	FALSE	231	205	14	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	6	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	17312	1586	0	0.01	0.0391	0.0781	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	0.01	0.1172	FALSE	231	205	14	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	NO	11824	0	0	1	0.0521	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	1	0.0781	FALSE	230	193	14	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	2	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	13774	1902	0	0	0.0521	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	0	0	0.0781	FALSE	231	205	14	283	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MUC6--MT-ND4	4	2	MUC6	16688	chr11:1017394:-	MT-ND4	23888	chrM:11146:+	INCL_NON_REF_SPLICE	YES	4106	17472	0	0	0.0521	0.026	MUC6->Oncogene{Bushman},chr11:1012821-1036706:-,mucin_6,_oligomeric_mucus/gel-forming,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	LS180_LARGE_INTESTINE	0	0	0.0781	FALSE	0	0	0	2	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	GPHN--MPP5	1	13	GPHN	2185	chr14:66975309:+	MPP5	51207	chr14:67779244:+	ONLY_REF_SPLICE	YES	42	45	0.25	0.24	0.013	0.1693	NEIGHBORS[59306],GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5	LS180_LARGE_INTESTINE	0.24	0.25	0.1823	FALSE	0	0	0	1	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-CO1--SUMO2	4	1	MT-CO1	1592	chrM:6495:+	SUMO2	5567	chr17:73179054:-	INCL_NON_REF_SPLICE	YES	21179	0	0	1	0.0521	0.013	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	LS180_LARGE_INTESTINE	0	1	0.0651	FALSE	0	0	0	12	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LS180_LARGE_INTESTINE	1	1	0.0521	FALSE	183	104	9	328	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MUC6--MT-ND4	3	4	MUC6	16729	chr11:1017353:-	MT-ND4	23605	chrM:10863:+	INCL_NON_REF_SPLICE	YES	4833	175	0	0.04	0.0391	0.0521	MUC6->Oncogene{Bushman},chr11:1012821-1036706:-,mucin_6,_oligomeric_mucus/gel-forming,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	LS180_LARGE_INTESTINE	0	0.04	0.0912	FALSE	0	0	0	2	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-CO1--MT-RNR2	3	3	MT-CO1	1446	chrM:6349:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	23368	0	0	1	0.0391	0.0391	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LS180_LARGE_INTESTINE	0	1	0.0782	FALSE	44	51	6	21	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MUC6--MT-ND4	3	3	MUC6	16668	chr11:1017414:-	MT-ND4	23488	chrM:10746:+	INCL_NON_REF_SPLICE	YES	3928	0	0	1	0.0391	0.0391	MUC6->Oncogene{Bushman},chr11:1012821-1036706:-,mucin_6,_oligomeric_mucus/gel-forming,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	LS180_LARGE_INTESTINE	0	1	0.0782	FALSE	0	0	0	2	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	DANCR--CTD-2354A18.1	3	2	DANCR	1530	chr4:53579126:+	CTD-2354A18.1	10186	chr18:70999698:+	ONLY_REF_SPLICE	YES	1052	292	0	0.02	0.0391	0.026	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,CTD-2354A18.1->chr18:70992176-71017113:+	LS180_LARGE_INTESTINE	0	0.02	0.0651	FALSE	0	0	0	5	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	12286	0	0	1	0.0391	0.026	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LS180_LARGE_INTESTINE	0	1	0.0651	FALSE	182	97	9	327	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	SCARB1--UBC	3	2	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	343	44	0.01	0.1	0.0391	0.026	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	LS180_LARGE_INTESTINE	0.01	0.1	0.0651	FALSE	55	66	6	101	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	ACAP2--OPCML	3	1	ACAP2	29606	chr3:195009850:-	OPCML	45665	chr11:132527214:-	ONLY_REF_SPLICE	YES	50	0	0.07	1	0.0391	0.013	ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-,OPCML->Oncogene{Bushman},chr11:132284871-133402414:-,opioid_binding_protein/cell_adhesion_molecule-like	LS180_LARGE_INTESTINE	0.07	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000957
LS180_LARGE_INTESTINE	FTH1--ACTG1	3	1	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	7086	3	0	0.57	0.0391	0.013	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	LS180_LARGE_INTESTINE	0	0.57	0.0521	FALSE	0	0	0	64	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-TA--MT-TC	3	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0.013	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS180_LARGE_INTESTINE	1	1	0.0521	FALSE	462	80	0	856	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1387	chrM:8913:+	MT-CO1	5960	chrM:7182:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LS180_LARGE_INTESTINE	1	1	0.0391	FALSE	183	104	9	328	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LS180_LARGE_INTESTINE	1	1	0.0391	FALSE	183	104	9	328	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	MT-ND3--MT-ATP8	3	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS180_LARGE_INTESTINE	1	1	0.0391	FALSE	351	233	23	137	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	PHB--EEF2	3	0	PHB	5239	chr17:47486804:-	EEF2	12800	chr19:3985461:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0	PHB->Oncogene{Bushman},chr17:47481414-47492246:-,prohibitin,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	LS180_LARGE_INTESTINE	1	1	0.0391	TRUE	0	0	0	2	0	TRUE	ACH-000957
LS180_LARGE_INTESTINE	AC073283.4--EPCAM	2	0	AC073283.4	1174	chr2:47572040:-	EPCAM	20907	chr2:47606092:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_INVERSION:-:+:[84],AC073283.4->chr2:47419544-47572213:-,EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule	LS180_LARGE_INTESTINE	1	1	0.026	TRUE	0	5	0	5	2	TRUE	ACH-000957
LS180_LARGE_INTESTINE	GRTP1--LAMP1	2	0	GRTP1	1370	chr13:114018077:-	LAMP1	15130	chr13:113960800:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[518],GRTP1->chr13:113978505-114018446:-,growth_hormone_regulated_TBC_protein_1,LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1	LS180_LARGE_INTESTINE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000957
LS180_LARGE_INTESTINE	RCC1--CTD-2354A18.1	2	0	RCC1	2175	chr1:28834672:+	CTD-2354A18.1	21772	chr18:70999700:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CTD-2354A18.1->chr18:70992176-71017113:+	LS180_LARGE_INTESTINE	1	1	0.026	TRUE	0	1	0	7	0	TRUE	ACH-000957
LS180_LARGE_INTESTINE	TRAF2--MRPL11	2	0	TRAF2	11938	chr9:139804446:+	MRPL11	24761	chr11:66205730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	TRAF2->TNF_receptor_associated_factor_2,chr9:139776364-139821059:+,MRPL11->chr11:66202546-66234209:-,mitochondrial_ribosomal_protein_L11	LS180_LARGE_INTESTINE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000957
LS180_LARGE_INTESTINE	ZNF133--CSRP2BP	2	0	ZNF133	1128	chr20:18269248:+	CSRP2BP	23630	chr20:18162354:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	GTEx&tcga_normals:1/3694=0.03%,ZNF133->chr20:18269121-18297640:+,zinc_finger_protein_133,CSRP2BP->Oncogene{Bushman},chr20:18118762-18169031:+	LS180_LARGE_INTESTINE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000957
LS180_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.013	0.0391	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LS180_LARGE_INTESTINE	0.67	1	0.0521	FALSE	275	511	55	178	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.67	1	0.013	0.0391	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LS180_LARGE_INTESTINE	0.67	1	0.0521	FALSE	407	2205	196	549	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	462	281	0	0.01	0.013	0.013	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	LS180_LARGE_INTESTINE	0	0.01	0.026	FALSE	16	22	0	27	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	ATP2C2--NUDT21	1	1	ATP2C2	2299	chr16:84432215:+	NUDT21	39831	chr16:56466645:-	ONLY_REF_SPLICE	YES	163	149	0.01	0.01	0.013	0.013	ATP2C2->ATPase_secretory_pathway_Ca2+_transporting_2,chr16:84402133-84497793:+,NUDT21->chr16:56463045-56486111:-,nudix_hydrolase_21	LS180_LARGE_INTESTINE	0.01	0.01	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000957
LS180_LARGE_INTESTINE	GSTCD--PPA2	1	1	GSTCD	7953	chr4:106650656:+	PPA2	35366	chr4:106320321:-	ONLY_REF_SPLICE	YES	49	418	0.04	0	0.013	0.013	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},GSTCD->chr4:106629935-106768885:+,glutathione_S-transferase_C-terminal_domain_containing,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	LS180_LARGE_INTESTINE	0	0.04	0.026	FALSE	1	0	0	1	0	FALSE	ACH-000957
RT4_URINARY_TRACT	FGFR3--TACC3	437	530	FGFR3	9864	chr4:1808661:+	TACC3	18250	chr4:1729704:+	INCL_NON_REF_SPLICE	YES	470	331	0.67	0.74	4.3616	5.2899	Cosmic{samples=250,mutations=14,papers=8},YOSHIHARA_TCGA_num_samples[BLCA:3|GBM:5|HNSC:2|LGG:1|LUSC:4],{Klijn_CCL:Liver=1,Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[48136],FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	RT4_URINARY_TRACT	0.67	0.74	9.6515	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	GPR110--TNFRSF21	175	207	GPR110	7908	chr6:46988467:-	TNFRSF21	31544	chr6:47252168:-	ONLY_REF_SPLICE	YES	395	2326	0.49	0.14	1.7467	2.066	{Klijn_CCL:Stomach=1},GPR110->chr6:46965440-47010099:-,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	RT4_URINARY_TRACT	0.14	0.49	3.8127	TRUE	0	0	0	2	0	TRUE	ACH-000242
RT4_URINARY_TRACT	FGFR3--TACC3	92	530	FGFR3	9864	chr4:1808661:+	TACC3	18254	chr4:1729708:+	INCL_NON_REF_SPLICE	YES	470	319	0.57	0.66	0.9182	5.2899	Cosmic{samples=250,mutations=14,papers=8},YOSHIHARA_TCGA_num_samples[BLCA:3|GBM:5|HNSC:2|LGG:1|LUSC:4],{Klijn_CCL:Liver=1,Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[48136],FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	RT4_URINARY_TRACT	0.57	0.66	6.2081	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	TIMM23B--LINC00843	100	46	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9981	0.4591	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RT4_URINARY_TRACT	1	1	1.4572	TRUE	508	994	45	981	0	FALSE	ACH-000242
RT4_URINARY_TRACT	GPR110--TNFRSF21	28	169	GPR110	6849	chr6:46989694:-	TNFRSF21	31544	chr6:47252168:-	ONLY_REF_SPLICE	YES	386	2326	0.34	0.08	0.2795	1.6868	{Klijn_CCL:Stomach=1},GPR110->chr6:46965440-47010099:-,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	RT4_URINARY_TRACT	0.08	0.34	1.9663	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	TIMM23--RP11-464F9.1	60	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	371	3	0.15	0.96	0.5989	0.0798	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RT4_URINARY_TRACT	0.15	0.96	0.6787	TRUE	519	3926	326	965	0	FALSE	ACH-000242
RT4_URINARY_TRACT	GPR110--TNFRSF21	22	155	GPR110	7908	chr6:46988467:-	TNFRSF21	31584	chr6:47252128:-	INCL_NON_REF_SPLICE	YES	395	1888	0.31	0.09	0.2196	1.547	{Klijn_CCL:Stomach=1},GPR110->chr6:46965440-47010099:-,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	RT4_URINARY_TRACT	0.09	0.31	1.7666	TRUE	0	0	0	2	0	TRUE	ACH-000242
RT4_URINARY_TRACT	RP11-123O10.4--GRIP1	52	11	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.519	0.1098	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RT4_URINARY_TRACT	1	1	0.6288	FALSE	416	2512	207	587	0	FALSE	ACH-000242
RT4_URINARY_TRACT	CCDC12--SETD2	42	12	CCDC12	3571	chr3:47018127:-	SETD2	37646	chr3:47103836:-	ONLY_REF_SPLICE	YES	124	121	0.3	0.31	0.4192	0.1198	LOCAL_REARRANGEMENT:-:[34419],CCDC12->chr3:46963216-47023500:-,coiled-coil_domain_containing_12,SETD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SET_domain_containing_2,chr3:47057919-47205457:-	RT4_URINARY_TRACT	0.3	0.31	0.539	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	MT-TA--MT-TC	43	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4292	0.0299	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RT4_URINARY_TRACT	1	1	0.4591	FALSE	462	80	0	856	0	FALSE	ACH-000242
RT4_URINARY_TRACT	ZNF654--HMGB2	40	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3992	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RT4_URINARY_TRACT	1	1	0.3992	TRUE	0	0	0	518	0	FALSE	ACH-000242
RT4_URINARY_TRACT	S100A6--S100A2	38	0	S100A6	1949	chr1:153507772:-	S100A2	9347	chr1:153536306:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3793	0	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[24864],S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-,S100A2->S100_calcium_binding_protein_A2,chr1:153533584-153540366:-	RT4_URINARY_TRACT	1	1	0.3793	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	RP11-114H23.1--RP11-114H23.2	21	35	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	10	0	0.85	1	0.2096	0.3493	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	RT4_URINARY_TRACT	0.85	1	0.5589	FALSE	81	155	12	160	0	FALSE	ACH-000242
RT4_URINARY_TRACT	CORO7--POLR3K	24	18	CORO7	14420	chr16:4437987:-	POLR3K	32278	chr16:97557:-	ONLY_REF_SPLICE	YES	71	334	0.37	0.11	0.2395	0.1797	CORO7->chr16:4404543-4475706:-,coronin_7,POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K	RT4_URINARY_TRACT	0.11	0.37	0.4192	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	HSPBP1--ZSWIM6	25	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2495	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	RT4_URINARY_TRACT	1	1	0.2495	TRUE	47	32	1	28	0	FALSE	ACH-000242
RT4_URINARY_TRACT	GPR110--TNFRSF21	1	93	GPR110	5748	chr6:46991780:-	TNFRSF21	31544	chr6:47252168:-	ONLY_REF_SPLICE	YES	514	2326	0.15	0.04	0.01	0.9282	{Klijn_CCL:Stomach=1},GPR110->chr6:46965440-47010099:-,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	RT4_URINARY_TRACT	0.04	0.15	0.9382	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	OCIAD2--OCIAD1	17	3	OCIAD2	1280	chr4:48908675:-	OCIAD1	21554	chr4:48853823:+	ONLY_REF_SPLICE	YES	200	654	0.09	0.03	0.1697	0.0299	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},PROTCLUST,LOCAL_INVERSION:-:+:[23202],OCIAD2->OCIA_domain_containing_2,chr4:48887036-48908954:-,OCIAD1->OCIA_domain_containing_1,chr4:48807229-48863834:+	RT4_URINARY_TRACT	0.03	0.09	0.1996	TRUE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	7	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.86	1	0.0699	0.1198	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RT4_URINARY_TRACT	0.86	1	0.1897	FALSE	515	4851	409	746	0	FALSE	ACH-000242
RT4_URINARY_TRACT	RP11-114H23.1--RP11-114H23.2	3	26	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	10	0	0.74	1	0.0299	0.2595	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	RT4_URINARY_TRACT	0.74	1	0.2894	FALSE	81	155	12	160	0	FALSE	ACH-000242
RT4_URINARY_TRACT	CALM3--MT-ND4L	7	9	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	3250	0	0	1	0.0699	0.0898	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RT4_URINARY_TRACT	0	1	0.1597	FALSE	1	1	0	107	0	FALSE	ACH-000242
RT4_URINARY_TRACT	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0898	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RT4_URINARY_TRACT	1	1	0.0898	TRUE	0	0	0	434	0	FALSE	ACH-000242
RT4_URINARY_TRACT	RP11-123O10.4--GRIP1	7	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0699	0.0699	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RT4_URINARY_TRACT	1	1	0.1398	FALSE	93	270	15	244	0	FALSE	ACH-000242
RT4_URINARY_TRACT	CCDC12--SETD2	5	12	CCDC12	3855	chr3:47017843:-	SETD2	37646	chr3:47103836:-	ONLY_REF_SPLICE	YES	228	121	0.07	0.12	0.0499	0.1198	LOCAL_REARRANGEMENT:-:[34419],CCDC12->chr3:46963216-47023500:-,coiled-coil_domain_containing_12,SETD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SET_domain_containing_2,chr3:47057919-47205457:-	RT4_URINARY_TRACT	0.07	0.12	0.1697	TRUE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	REV3L--RPL28	8	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0798	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	RT4_URINARY_TRACT	1	1	0.0798	TRUE	22	156	2	142	0	FALSE	ACH-000242
RT4_URINARY_TRACT	RPS6--B2M	8	0	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0798	0	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	RT4_URINARY_TRACT	1	1	0.0798	TRUE	0	0	0	28	0	FALSE	ACH-000242
RT4_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	4	15	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.0399	0.1497	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RT4_URINARY_TRACT	0.95	1	0.1896	FALSE	192	492	57	212	0	FALSE	ACH-000242
RT4_URINARY_TRACT	CORO7--POLR3K	3	18	CORO7	14440	chr16:4437967:-	POLR3K	32278	chr16:97557:-	INCL_NON_REF_SPLICE	YES	71	334	0.23	0.06	0.0299	0.1797	CORO7->chr16:4404543-4475706:-,coronin_7,POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K	RT4_URINARY_TRACT	0.06	0.23	0.2096	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	MT-ND4--MT-ATP8	7	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16034	9	0	0.5	0.0699	0.02	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT4_URINARY_TRACT	0	0.5	0.0899	FALSE	231	205	14	283	0	FALSE	ACH-000242
RT4_URINARY_TRACT	MT-ND4--MT-ATP8	7	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	13453	6	0	0.6	0.0699	0.02	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT4_URINARY_TRACT	0	0.6	0.0899	FALSE	230	193	14	283	0	FALSE	ACH-000242
RT4_URINARY_TRACT	SERF2--CTC-575D19.1	7	1	SERF2	6109	chr15:44085993:+	CTC-575D19.1	16124	chr5:168043316:+	INCL_NON_REF_SPLICE	YES	2928	0	0	1	0.0699	0.01	SERF2->chr15:44069285-44094787:+,small_EDRK-rich_factor_2,CTC-575D19.1->chr5:168043317-168044059:+	RT4_URINARY_TRACT	0	1	0.0799	FALSE	0	0	0	3	0	FALSE	ACH-000242
RT4_URINARY_TRACT	MT-ATP6--MT-CO1	7	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RT4_URINARY_TRACT	1	1	0.0699	FALSE	183	104	9	328	0	FALSE	ACH-000242
RT4_URINARY_TRACT	NPM1P4--NCL	7	0	NPM1P4	1488	chr13:28270854:-	NCL	10594	chr2:232325482:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	RT4_URINARY_TRACT	1	1	0.0699	TRUE	0	0	0	3	0	TRUE	ACH-000242
RT4_URINARY_TRACT	SLC1A5--MT-ND4L	7	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RT4_URINARY_TRACT	1	1	0.0699	FALSE	0	0	0	189	0	FALSE	ACH-000242
RT4_URINARY_TRACT	NPM1P4--NCL	6	0	NPM1P4	1488	chr13:28270854:-	NCL	10591	chr2:232325485:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0599	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	RT4_URINARY_TRACT	1	1	0.0599	TRUE	0	0	0	3	0	TRUE	ACH-000242
RT4_URINARY_TRACT	NRIP1--AF127936.7	5	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	51	0	0.14	1	0.0499	0.0299	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RT4_URINARY_TRACT	0.14	1	0.0798	FALSE	164	806	69	479	0	FALSE	ACH-000242
RT4_URINARY_TRACT	MT-ND4--MT-ATP8	4	5	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	17747	0	0	1	0.0399	0.0499	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT4_URINARY_TRACT	0	1	0.0898	FALSE	231	217	16	283	0	FALSE	ACH-000242
RT4_URINARY_TRACT	NPM1P4--NCL	5	0	NPM1P4	1488	chr13:28270854:-	NCL	10603	chr2:232325473:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	RT4_URINARY_TRACT	1	1	0.0499	TRUE	0	0	0	3	0	TRUE	ACH-000242
RT4_URINARY_TRACT	FGFR3--TACC3	4	3	FGFR3	9864	chr4:1808661:+	TACC3	20145	chr4:1732614:+	ONLY_REF_SPLICE	YES	470	1123	0.01	0.01	0.0399	0.0299	Cosmic{samples=250,mutations=14,papers=8},YOSHIHARA_TCGA_num_samples[BLCA:3|GBM:5|HNSC:2|LGG:1|LUSC:4],{Klijn_CCL:Liver=1,Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[48136],FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	RT4_URINARY_TRACT	0.01	0.01	0.0698	FALSE	0	2	0	2	2	FALSE	ACH-000242
RT4_URINARY_TRACT	RP11-123O10.4--GRIP1	2	11	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0.1098	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RT4_URINARY_TRACT	1	1	0.1298	FALSE	9	21	5	22	0	FALSE	ACH-000242
RT4_URINARY_TRACT	CCDC43--GPATCH8	4	2	CCDC43	2318	chr17:42761240:-	GPATCH8	12961	chr17:42552271:-	ONLY_REF_SPLICE	YES	96	3	0.06	0.67	0.0399	0.02	CCDC43->chr17:42750437-42767147:-,coiled-coil_domain_containing_43,GPATCH8->G-patch_domain_containing_8,chr17:42472652-42580798:-	RT4_URINARY_TRACT	0.06	0.67	0.0599	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	MT-ND4--MT-ATP8	4	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19847	0	0	1	0.0399	0.02	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT4_URINARY_TRACT	0	1	0.0599	FALSE	231	217	16	283	0	FALSE	ACH-000242
RT4_URINARY_TRACT	MT-TA--MT-TC	4	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0.02	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RT4_URINARY_TRACT	1	1	0.0599	FALSE	462	80	0	856	0	FALSE	ACH-000242
RT4_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	14	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	3	0	0.83	1	0.01	0.1397	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RT4_URINARY_TRACT	0.83	1	0.1497	FALSE	407	2205	196	549	0	FALSE	ACH-000242
RT4_URINARY_TRACT	MT-ATP6--MT-CO1	3	5	MT-ATP6	1555	chrM:9081:+	MT-CO1	4998	chrM:6220:+	INCL_NON_REF_SPLICE	YES	3369	24227	0	0	0.0299	0.0499	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RT4_URINARY_TRACT	0	0	0.0798	FALSE	183	104	9	328	0	FALSE	ACH-000242
RT4_URINARY_TRACT	TBC1D8--RFX8	4	1	TBC1D8	1105	chr2:101869224:-	RFX8	37773	chr2:102038934:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0.01	TBC1D8->TBC1_domain_family_member_8,chr2:101624079-101869328:-,RFX8->RFX_family_member_8,_lacking_RFX_DNA_binding_domain,chr2:102013823-102091165:-	RT4_URINARY_TRACT	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0.0399	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RT4_URINARY_TRACT	1	1	0.0698	FALSE	462	80	0	856	0	FALSE	ACH-000242
RT4_URINARY_TRACT	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RT4_URINARY_TRACT	1	1	0.0399	TRUE	0	0	0	434	0	FALSE	ACH-000242
RT4_URINARY_TRACT	NPM1P4--NCL	4	0	NPM1P4	1490	chr13:28270852:-	NCL	10584	chr2:232325492:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	RT4_URINARY_TRACT	1	1	0.0399	TRUE	0	0	0	3	0	TRUE	ACH-000242
RT4_URINARY_TRACT	NPM1P4--NCL	4	0	NPM1P4	1491	chr13:28270851:-	NCL	9660	chr2:232326416:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	RT4_URINARY_TRACT	1	1	0.0399	TRUE	0	0	0	3	0	TRUE	ACH-000242
RT4_URINARY_TRACT	TOMM40L--NDUFS2	4	0	TOMM40L	1134	chr1:161195926:+	NDUFS2	19348	chr1:161183439:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	LOCAL_REARRANGEMENT:+:[11608],TOMM40L->chr1:161195793-161200408:+,translocase_of_outer_mitochondrial_membrane_40_like,NDUFS2->NADH:ubiquinone_oxidoreductase_core_subunit_S2,chr1:161166894-161184185:+	RT4_URINARY_TRACT	1	1	0.0399	TRUE	0	2	0	2	0	TRUE	ACH-000242
RT4_URINARY_TRACT	EEF2--FABP4	3	3	EEF2	3532	chr19:3982936:-	FABP4	13289	chr8:82395468:-	INCL_NON_REF_SPLICE	YES	5893	0	0	1	0.0299	0.0299	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,FABP4->chr8:82390654-82395498:-,fatty_acid_binding_protein_4	RT4_URINARY_TRACT	0	1	0.0598	FALSE	0	0	0	2	0	FALSE	ACH-000242
RT4_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13541	9	0	0.36	0.0299	0.02	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT4_URINARY_TRACT	0	0.36	0.0499	FALSE	230	198	14	283	0	FALSE	ACH-000242
RT4_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	20525	0	0	1	0.0299	0.02	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT4_URINARY_TRACT	0	1	0.0499	FALSE	231	217	16	283	0	FALSE	ACH-000242
RT4_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	13826	0	0	1	0.0299	0.02	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT4_URINARY_TRACT	0	1	0.0499	FALSE	231	204	14	283	0	FALSE	ACH-000242
RT4_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	20544	0	0	1	0.0299	0.02	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT4_URINARY_TRACT	0	1	0.0499	FALSE	231	217	16	283	0	FALSE	ACH-000242
RT4_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	19886	0	0	1	0.0299	0.02	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT4_URINARY_TRACT	0	1	0.0499	FALSE	231	217	16	283	0	FALSE	ACH-000242
RT4_URINARY_TRACT	OCIAD2--OCIAD1	3	2	OCIAD2	1280	chr4:48908675:-	OCIAD1	24494	chr4:48859230:+	ONLY_REF_SPLICE	NO	200	710	0.02	0.01	0.0299	0.02	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},PROTCLUST,LOCAL_INVERSION:-:+:[23202],OCIAD2->OCIA_domain_containing_2,chr4:48887036-48908954:-,OCIAD1->OCIA_domain_containing_1,chr4:48807229-48863834:+	RT4_URINARY_TRACT	0.01	0.02	0.0499	FALSE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	MT-ATP6--MT-CO1	3	1	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	11523	27061	0	0	0.0299	0.01	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RT4_URINARY_TRACT	0	0	0.0399	FALSE	183	104	9	328	0	FALSE	ACH-000242
RT4_URINARY_TRACT	MT-TA--MT-TC	3	1	MT-TA	1051	chrM:5605:-	MT-TC	4078	chrM:5818:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0.01	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RT4_URINARY_TRACT	1	1	0.0399	FALSE	462	80	0	856	0	FALSE	ACH-000242
RT4_URINARY_TRACT	NDUFV3--U2AF1	3	1	NDUFV3	5809	chr21:44317157:+	U2AF1	26761	chr21:44515853:-	ONLY_REF_SPLICE	YES	363	1976	0.01	0	0.0299	0.01	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Substantia_nigra=1},NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	RT4_URINARY_TRACT	0	0.01	0.0399	FALSE	0	5	0	8	0	FALSE	ACH-000242
RT4_URINARY_TRACT	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RT4_URINARY_TRACT	1	1	0.0299	TRUE	0	0	0	434	0	FALSE	ACH-000242
RT4_URINARY_TRACT	NPM1P4--NCL	3	0	NPM1P4	1484	chr13:28270858:-	NCL	10584	chr2:232325492:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	RT4_URINARY_TRACT	1	1	0.0299	TRUE	0	0	0	3	0	TRUE	ACH-000242
RT4_URINARY_TRACT	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RT4_URINARY_TRACT	1	1	0.0299	FALSE	292	1546	117	613	0	FALSE	ACH-000242
RT4_URINARY_TRACT	GPR110--TNFRSF21	1	6	GPR110	1173	chr6:47009927:-	TNFRSF21	29892	chr6:47254331:-	ONLY_REF_SPLICE	YES	1025	1043	0.01	0.01	0.01	0.0599	{Klijn_CCL:Stomach=1},GPR110->chr6:46965440-47010099:-,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	RT4_URINARY_TRACT	0.01	0.01	0.0699	FALSE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	CCDC12--SETD2	1	5	CCDC12	3571	chr3:47018127:-	SETD2	38833	chr3:47098980:-	ONLY_REF_SPLICE	YES	124	148	0.05	0.04	0.01	0.0499	LOCAL_REARRANGEMENT:-:[34419],CCDC12->chr3:46963216-47023500:-,coiled-coil_domain_containing_12,SETD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SET_domain_containing_2,chr3:47057919-47205457:-	RT4_URINARY_TRACT	0.04	0.05	0.0599	TRUE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	HIF1A--PRKCH	2	1	HIF1A	1327	chr14:62162557:+	PRKCH	48659	chr14:61952220:+	ONLY_REF_SPLICE	YES	901	348	0	0.01	0.02	0.01	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	RT4_URINARY_TRACT	0	0.01	0.03	FALSE	1	15	1	9	1	FALSE	ACH-000242
RT4_URINARY_TRACT	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	35	0	0.08	1	0.02	0.01	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RT4_URINARY_TRACT	0.08	1	0.03	FALSE	125	705	46	456	0	FALSE	ACH-000242
RT4_URINARY_TRACT	RP4-565E6.1--HYDIN	2	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.02	0.01	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	RT4_URINARY_TRACT	0.75	1	0.03	TRUE	456	1387	91	133	0	FALSE	ACH-000242
RT4_URINARY_TRACT	ALG11--RPL41	2	0	ALG11	1065	chr13:52586598:+	RPL41	13201	chr12:56510559:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	ALG11->ALG11,_alpha-1,2-mannosyltransferase,chr13:52586534-52603800:+,RPL41->chr12:56510370-56511727:+,ribosomal_protein_L41	RT4_URINARY_TRACT	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	RT4_URINARY_TRACT	1	1	0.02	TRUE	2	8	0	24	0	FALSE	ACH-000242
RT4_URINARY_TRACT	CPSF6--SRSF4	2	0	CPSF6	11046	chr12:69656342:+	SRSF4	24442	chr1:29487029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF4->chr1:29474255-29508499:-,serine/arginine-rich_splicing_factor_4	RT4_URINARY_TRACT	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	LYPD6B--ASS1	2	0	LYPD6B	1695	chr2:149895315:+	ASS1	27909	chr9:133327611:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	LYPD6B->LY6/PLAUR_domain_containing_6B,chr2:149894621-150071776:+,ASS1->argininosuccinate_synthase_1,chr9:133320316-133376661:+	RT4_URINARY_TRACT	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	NDUFA4--PHF14	2	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	RT4_URINARY_TRACT	1	1	0.02	TRUE	19	32	3	60	0	FALSE	ACH-000242
RT4_URINARY_TRACT	PRIMPOL--SEPT9	2	0	PRIMPOL	2374	chr4:185573254:+	SEPT9	47858	chr17:75478226:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	PRIMPOL->chr4:185570767-185616117:+,primase_and_DNA_directed_polymerase,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	RT4_URINARY_TRACT	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	RNF152--RP11-879F14.1	2	0	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	RT4_URINARY_TRACT	1	1	0.02	FALSE	275	472	65	43	0	FALSE	ACH-000242
RT4_URINARY_TRACT	STAG3L5P--SLC23A2	2	0	STAG3L5P	1531	chr7:99934232:+	SLC23A2	25639	chr20:4850699:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	STAG3L5P->chr7:99933702-99949523:+,stromal_antigen_3-like_5_pseudogene,SLC23A2->chr20:4833002-4990939:-,solute_carrier_family_23_member_2	RT4_URINARY_TRACT	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	TBCD--FGD5-AS1	2	0	TBCD	15597	chr17:80816543:+	FGD5-AS1	57137	chr3:14987661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D,FGD5-AS1->FGD5_antisense_RNA_1,chr3:14961854-14989931:-	RT4_URINARY_TRACT	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	GPR110--TNFRSF21	1	2	GPR110	6849	chr6:46989694:-	TNFRSF21	33039	chr6:47221257:-	ONLY_REF_SPLICE	YES	386	1603	0.01	0	0.01	0.02	{Klijn_CCL:Stomach=1},GPR110->chr6:46965440-47010099:-,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	RT4_URINARY_TRACT	0	0.01	0.03	FALSE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	ATF7IP--HNRNPC	1	1	ATF7IP	1152	chr12:14518761:+	HNRNPC	42127	chr14:21702388:-	ONLY_REF_SPLICE	YES	153	3845	0.01	0	0.01	0.01	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},ATF7IP->Oncogene{Bushman},activating_transcription_factor_7_interacting_protein,chr12:14518610-14651697:+,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	RT4_URINARY_TRACT	0	0.01	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	CCDC43--GPATCH8	1	1	CCDC43	1230	chr17:42766918:-	GPATCH8	12961	chr17:42552271:-	ONLY_REF_SPLICE	NO	98	3	0.02	0.4	0.01	0.01	CCDC43->chr17:42750437-42767147:-,coiled-coil_domain_containing_43,GPATCH8->G-patch_domain_containing_8,chr17:42472652-42580798:-	RT4_URINARY_TRACT	0.02	0.4	0.02	TRUE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	PHLDB2--PVRL3	1	1	PHLDB2	1207	chr3:111451550:+	PVRL3	46058	chr3:110830877:+	ONLY_REF_SPLICE	NO	159	74	0.01	0.03	0.01	0.01	PHLDB2->chr3:111451344-111695364:+,pleckstrin_homology_like_domain_family_B_member_2,PVRL3->chr3:110788918-110994410:+	RT4_URINARY_TRACT	0.01	0.03	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	PNKP--MRPL9	1	1	PNKP	2511	chr19:50369656:-	MRPL9	12719	chr1:151734028:-	ONLY_REF_SPLICE	YES	291	452	0.01	0	0.01	0.01	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},PNKP->chr19:50364461-50371166:-,polynucleotide_kinase_3'-phosphatase,MRPL9->chr1:151732119-151736040:-,mitochondrial_ribosomal_protein_L9	RT4_URINARY_TRACT	0	0.01	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	PPP1R12C--CNN2	1	1	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	277	1257	0.01	0	0.01	0.01	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	RT4_URINARY_TRACT	0	0.01	0.02	FALSE	35	34	3	30	0	FALSE	ACH-000242
RT4_URINARY_TRACT	RP4-535B20.1--ZBTB18	1	1	RP4-535B20.1	1134	chr1:65533287:-	ZBTB18	6274	chr1:244217090:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.01	0.01	RP4-535B20.1->chr1:65532310-65533420:-,ZBTB18->chr1:244214585-244220778:+,zinc_finger_and_BTB_domain_containing_18	RT4_URINARY_TRACT	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000242
RT4_URINARY_TRACT	RPLP0--GALE	1	1	RPLP0	3682	chr12:120636357:-	GALE	11102	chr1:24124720:-	ONLY_REF_SPLICE	NO	13477	182	0	0.01	0.01	0.01	RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0,GALE->UDP-galactose-4-epimerase,chr1:24122089-24127271:-	RT4_URINARY_TRACT	0	0.01	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	RPP38--PSMB2	1	1	RPP38	1587	chr10:15139765:+	PSMB2	12581	chr1:36102033:-	ONLY_REF_SPLICE	NO	35	1575	0.05	0	0.01	0.01	RPP38->chr10:15139179-15181817:+,ribonuclease_P/MRP_subunit_p38,PSMB2->chr1:36067185-36107445:-,proteasome_subunit_beta_2	RT4_URINARY_TRACT	0	0.05	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	S100A6--S100A2	1	1	S100A6	2043	chr1:153507678:-	S100A2	10763	chr1:153534067:-	ONLY_REF_SPLICE	NO	5206	6308	0	0	0.01	0.01	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[24864],S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-,S100A2->S100_calcium_binding_protein_A2,chr1:153533584-153540366:-	RT4_URINARY_TRACT	0	0	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	SAFB--MLLT1	1	1	SAFB	2445	chr19:5626500:+	MLLT1	25584	chr19:6230724:-	ONLY_REF_SPLICE	YES	350	225	0.01	0.01	0.01	0.01	SAFB->chr19:5623046-5668489:+,scaffold_attachment_factor_B,MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1	RT4_URINARY_TRACT	0.01	0.01	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	SEPT11--CCNI	1	1	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	265	214	0.01	0.01	0.01	0.01	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	RT4_URINARY_TRACT	0.01	0.01	0.02	FALSE	0	1	0	17	0	FALSE	ACH-000242
RT4_URINARY_TRACT	SERTAD2--UGP2	1	1	SERTAD2	1725	chr2:64977415:-	UGP2	17497	chr2:64083440:+	ONLY_REF_SPLICE	NO	18	422	0.1	0	0.01	0.01	SERTAD2->SERTA_domain_containing_2,chr2:64858755-64978139:-,UGP2->UDP-glucose_pyrophosphorylase_2,chr2:64068074-64118696:+	RT4_URINARY_TRACT	0	0.1	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	TAF1D--PHF14	1	1	TAF1D	6933	chr11:93470230:-	PHF14	41565	chr7:11150977:+	ONLY_REF_SPLICE	YES	283	64	0.01	0.03	0.01	0.01	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Muscle_-_Skeletal=1},TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	RT4_URINARY_TRACT	0.01	0.03	0.02	FALSE	1	3	0	3	0	FALSE	ACH-000242
RT4_URINARY_TRACT	TCF12--SNRPN	1	1	TCF12	3439	chr15:57213296:+	SNRPN	51002	chr15:25207261:+	ONLY_REF_SPLICE	NO	214	47	0.01	0.04	0.01	0.01	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,SNRPN->chr15:25068794-25223870:+,small_nuclear_ribonucleoprotein_polypeptide_N	RT4_URINARY_TRACT	0.01	0.04	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	TP63--LEPREL1	1	1	TP63	4502	chr3:189507631:+	LEPREL1	30727	chr3:189713231:-	ONLY_REF_SPLICE	YES	334	140	0.01	0.01	0.01	0.01	LOCAL_INVERSION:+:-:[59449],TP63->chr3:189349205-189615068:+,tumor_protein_p63,LEPREL1->chr3:189674517-189840226:-	RT4_URINARY_TRACT	0.01	0.01	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	USP34--WDPCP	1	1	USP34	9592	chr2:61597456:-	WDPCP	111597	chr2:63380709:-	ONLY_REF_SPLICE	YES	95	3	0.02	0.4	0.01	0.01	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-	RT4_URINARY_TRACT	0.02	0.4	0.02	TRUE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	YBX3--KRT7	1	1	YBX3	15313	chr12:10854559:-	KRT7	25115	chr12:52632503:+	ONLY_REF_SPLICE	YES	1366	11082	0	0	0.01	0.01	YBX3->Y-box_binding_protein_3,chr12:10851683-10875911:-,KRT7->chr12:52626304-52645970:+,keratin_7	RT4_URINARY_TRACT	0	0	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000242
RT4_URINARY_TRACT	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	3454	149	0	0.01	0.01	0.01	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	RT4_URINARY_TRACT	0	0.01	0.02	FALSE	6	50	7	115	0	FALSE	ACH-000242
UOK101_KIDNEY	AXL--CEACAM19	69	139	AXL	6344	chr19:41737203:+	CEACAM19	31606	chr19:45182125:+	ONLY_REF_SPLICE	YES	199	29	0.51	0.88	0.8161	1.644	HGNC_GENEFAM,AXL->AXL_receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:41725108-41767671:+,CEACAM19->carcinoembryonic_antigen_related_cell_adhesion_molecule_19,chr19:45165545-45187631:+	UOK101_KIDNEY	0.51	0.88	2.4601	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	AXL--CEACAM19	53	109	AXL	6344	chr19:41737203:+	CEACAM19	32690	chr19:45183560:+	ONLY_REF_SPLICE	YES	199	39	0.45	0.81	0.6268	1.2891	HGNC_GENEFAM,AXL->AXL_receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:41725108-41767671:+,CEACAM19->carcinoembryonic_antigen_related_cell_adhesion_molecule_19,chr19:45165545-45187631:+	UOK101_KIDNEY	0.45	0.81	1.9159	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	TIMM23B--LINC00843	73	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8634	0.2602	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	UOK101_KIDNEY	0.99	1	1.1236	TRUE	508	994	45	981	0	FALSE	ACH-000262
UOK101_KIDNEY	RAP1B--RP11-81H14.2	53	53	RAP1B	1205	chr12:69004823:+	RP11-81H14.2	18783	chr12:68845332:-	INCL_NON_REF_SPLICE	YES	3227	0	0.03	1	0.6268	0.6268	RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+,RP11-81H14.2->chr12:68726668-68845443:-	UOK101_KIDNEY	0.03	1	1.2536	TRUE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	MDM2--IL26	46	35	MDM2	12225	chr12:69230529:+	IL26	24060	chr12:68595863:-	ONLY_REF_SPLICE	YES	734	0	0.1	1	0.544	0.4139	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,IL26->chr12:68595131-68619601:-,interleukin_26	UOK101_KIDNEY	0.1	1	0.9579	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	TIMM23--RP11-464F9.1	54	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	502	2	0.1	0.97	0.6387	0.0355	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	UOK101_KIDNEY	0.1	0.97	0.6742	TRUE	519	3926	326	965	0	FALSE	ACH-000262
UOK101_KIDNEY	PTEN--KCTD7	38	25	PTEN	4898	chr10:89653866:+	KCTD7	25547	chr7:66103240:+	ONLY_REF_SPLICE	YES	83	33	0.43	0.66	0.4494	0.2957	PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog,KCTD7->chr7:66093868-66276446:+,potassium_channel_tetramerization_domain_containing_7	UOK101_KIDNEY	0.43	0.66	0.7451	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	RAP1B--RP11-81H14.2	28	58	RAP1B	1214	chr12:69004832:+	RP11-81H14.2	18783	chr12:68845332:-	INCL_NON_REF_SPLICE	YES	4372	0	0.02	1	0.3312	0.686	RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+,RP11-81H14.2->chr12:68726668-68845443:-	UOK101_KIDNEY	0.02	1	1.0172	TRUE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	27	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14931	8	0	0.78	0.3193	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	0.78	0.3311	FALSE	230	198	14	283	0	FALSE	ACH-000262
UOK101_KIDNEY	MIPEPP3--ABHD12	27	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3193	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	UOK101_KIDNEY	1	1	0.3193	TRUE	64	202	9	44	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-TA--MT-TC	21	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2484	0.0591	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UOK101_KIDNEY	1	1	0.3075	FALSE	462	80	0	856	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	21	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	14813	6	0	0.79	0.2484	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	0.79	0.2602	FALSE	230	193	14	283	0	FALSE	ACH-000262
UOK101_KIDNEY	RAP1B--RP11-81H14.2	14	24	RAP1B	1205	chr12:69004823:+	RP11-81H14.2	20044	chr12:68835921:-	ONLY_REF_SPLICE	YES	3227	30	0.01	0.56	0.1656	0.2838	RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+,RP11-81H14.2->chr12:68726668-68845443:-	UOK101_KIDNEY	0.01	0.56	0.4494	TRUE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	C15orf57--CBX3	14	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	114	74	0.21	0.29	0.1656	0.1892	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	UOK101_KIDNEY	0.21	0.29	0.3548	TRUE	267	562	48	632	0	FALSE	ACH-000262
UOK101_KIDNEY	CDK13--C7orf10	12	18	CDK13	11480	chr7:40102699:+	C7orf10	44873	chr7:40789033:+	ONLY_REF_SPLICE	YES	35	1	0.46	0.97	0.1419	0.2129	NEIGHBORS[37842],CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,C7orf10->chr7:40174575-40900362:+	UOK101_KIDNEY	0.46	0.97	0.3548	FALSE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	NRIP1--AF127936.7	15	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.6	1	0.1774	0.0355	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	UOK101_KIDNEY	0.6	1	0.2129	FALSE	292	1546	117	613	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	15	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17712	8	0	0.68	0.1774	0.0237	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	0.68	0.2011	FALSE	231	205	14	283	0	FALSE	ACH-000262
UOK101_KIDNEY	PKM--PPIA	12	5	PKM	16753	chr15:72494877:-	PPIA	23268	chr7:44836286:+	INCL_NON_REF_SPLICE	YES	7122	0	0	1	0.1419	0.0591	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	UOK101_KIDNEY	0	1	0.201	TRUE	0	0	0	18	0	FALSE	ACH-000262
UOK101_KIDNEY	RAP1B--RP11-81H14.2	6	27	RAP1B	1214	chr12:69004832:+	RP11-81H14.2	20044	chr12:68835921:-	ONLY_REF_SPLICE	YES	4372	30	0.01	0.52	0.071	0.3193	RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+,RP11-81H14.2->chr12:68726668-68845443:-	UOK101_KIDNEY	0.01	0.52	0.3903	TRUE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	9	13	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	21462	0	0	1	0.1064	0.1538	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	1	0.2602	FALSE	231	217	16	283	0	FALSE	ACH-000262
UOK101_KIDNEY	ANP32B--APP	12	0	ANP32B	6936	chr9:100767435:+	APP	24379	chr21:27394302:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1419	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	UOK101_KIDNEY	1	1	0.1419	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	MDM2--IL22	9	12	MDM2	3198	chr12:69207408:+	IL22	22500	chr12:68647274:-	ONLY_REF_SPLICE	YES	614	1	0.03	0.95	0.1064	0.1419	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,IL22->Oncogene{Bushman},chr12:68642022-68647387:-,interleukin_22	UOK101_KIDNEY	0.03	0.95	0.2483	TRUE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	AXL--CEACAM19	2	38	AXL	6344	chr19:41737203:+	CEACAM19	34715	chr19:45185839:+	ONLY_REF_SPLICE	YES	199	90	0.17	0.31	0.0237	0.4494	HGNC_GENEFAM,AXL->AXL_receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:41725108-41767671:+,CEACAM19->carcinoembryonic_antigen_related_cell_adhesion_molecule_19,chr19:45165545-45187631:+	UOK101_KIDNEY	0.17	0.31	0.4731	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	SLC1A5--MT-ND4L	11	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	786	0	0.02	1	0.1301	0.0118	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UOK101_KIDNEY	0.02	1	0.1419	FALSE	0	0	0	189	0	FALSE	ACH-000262
UOK101_KIDNEY	C15orf57--CBX3	8	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	112	75	0.15	0.21	0.0946	0.1419	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	UOK101_KIDNEY	0.15	0.21	0.2365	TRUE	267	562	48	632	0	FALSE	ACH-000262
UOK101_KIDNEY	NRIP1--AF127936.7	7	15	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	74	0	0.23	1	0.0828	0.1774	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	UOK101_KIDNEY	0.23	1	0.2602	FALSE	164	806	69	479	0	FALSE	ACH-000262
UOK101_KIDNEY	NPM1P24--SET	10	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	NO	53	1668	0.17	0.01	0.1183	0.0118	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	UOK101_KIDNEY	0.01	0.17	0.1301	FALSE	0	0	0	434	0	FALSE	ACH-000262
UOK101_KIDNEY	INTS4--RSF1	8	8	INTS4	13551	chr11:77649697:-	RSF1	39768	chr11:77458173:-	ONLY_REF_SPLICE	YES	43	23	0.27	0.41	0.0946	0.0946	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[57703],INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1	UOK101_KIDNEY	0.27	0.41	0.1892	FALSE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	5	19	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	19896	0	0	1	0.0591	0.2247	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	1	0.2838	FALSE	231	217	16	283	0	FALSE	ACH-000262
UOK101_KIDNEY	RP11-96H19.1--RP11-446N19.1	8	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.94	0.94	0.0946	0.0828	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	UOK101_KIDNEY	0.94	0.94	0.1774	FALSE	515	4851	409	746	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	4	21	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2814	81	0.01	0.24	0.0473	0.2484	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0.01	0.24	0.2957	FALSE	216	209	16	281	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	3	23	MT-ND4	2103	chrM:11862:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	13046	0	0	1	0.0355	0.272	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	1	0.3075	FALSE	231	215	16	283	0	FALSE	ACH-000262
UOK101_KIDNEY	RP11-96H19.1--RP11-446N19.1	6	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.071	0.1301	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	UOK101_KIDNEY	0.94	1	0.2011	FALSE	407	2205	196	549	0	FALSE	ACH-000262
UOK101_KIDNEY	AXL--CEACAM19	1	30	AXL	3854	chr19:41727961:+	CEACAM19	31606	chr19:45182125:+	ONLY_REF_SPLICE	NO	305	29	0.09	0.52	0.0118	0.3548	HGNC_GENEFAM,AXL->AXL_receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:41725108-41767671:+,CEACAM19->carcinoembryonic_antigen_related_cell_adhesion_molecule_19,chr19:45165545-45187631:+	UOK101_KIDNEY	0.09	0.52	0.3666	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	CALM3--MT-ND4L	8	2	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1922	0	0.01	1	0.0946	0.0237	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UOK101_KIDNEY	0.01	1	0.1183	FALSE	1	1	0	107	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	3	20	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	20404	0	0	1	0.0355	0.2365	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	1	0.272	FALSE	231	217	16	283	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	3	18	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18889	81	0	0.21	0.0355	0.2129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	0.21	0.2484	FALSE	231	217	16	283	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	4	14	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	22111	0	0	1	0.0473	0.1656	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	1	0.2129	FALSE	231	217	16	283	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	3	17	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	20505	8	0	0.71	0.0355	0.2011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	0.71	0.2366	FALSE	231	217	16	283	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	4	13	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	21499	0	0	1	0.0473	0.1538	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	1	0.2011	FALSE	231	217	16	283	0	FALSE	ACH-000262
UOK101_KIDNEY	NRIP1--AF127936.7	5	9	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	46	0	0.23	1	0.0591	0.1064	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	UOK101_KIDNEY	0.23	1	0.1655	FALSE	125	705	46	456	0	FALSE	ACH-000262
UOK101_KIDNEY	RAP1B--RP11-81H14.2	2	21	RAP1B	1205	chr12:69004823:+	RP11-81H14.2	21298	chr12:68827151:-	ONLY_REF_SPLICE	YES	3227	33	0.01	0.41	0.0237	0.2484	RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+,RP11-81H14.2->chr12:68726668-68845443:-	UOK101_KIDNEY	0.01	0.41	0.2721	TRUE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	MDM2--SLC35E3	6	3	MDM2	2117	chr12:69203072:+	SLC35E3	30289	chr12:69160402:+	ONLY_REF_SPLICE	YES	729	66	0.01	0.12	0.071	0.0355	LOCAL_REARRANGEMENT:+:[14448],MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,SLC35E3->chr12:69139886-69187508:+,solute_carrier_family_35_member_E3	UOK101_KIDNEY	0.01	0.12	0.1065	TRUE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	4	11	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22352	81	0	0.16	0.0473	0.1301	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	0.16	0.1774	FALSE	231	217	16	283	0	FALSE	ACH-000262
UOK101_KIDNEY	CDK13--C7orf10	2	18	CDK13	11480	chr7:40102699:+	C7orf10	43795	chr7:40723655:+	ONLY_REF_SPLICE	YES	35	2	0.36	0.91	0.0237	0.2129	NEIGHBORS[37842],CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,C7orf10->chr7:40174575-40900362:+	UOK101_KIDNEY	0.36	0.91	0.2366	FALSE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	RP11-123O10.4--GRIP1	6	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.071	0.0237	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	UOK101_KIDNEY	1	1	0.0947	FALSE	416	2512	207	587	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	3	13	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	21749	0	0	1	0.0355	0.1538	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	1	0.1893	FALSE	231	217	16	283	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	3	13	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	21492	0	0	1	0.0355	0.1538	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	1	0.1893	FALSE	231	217	16	283	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	3	13	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	21462	0	0	1	0.0355	0.1538	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	1	0.1893	FALSE	231	217	16	283	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	5	5	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	21436	1646	0	0.01	0.0591	0.0591	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	0.01	0.1182	FALSE	231	205	14	283	0	FALSE	ACH-000262
UOK101_KIDNEY	FN1--MT-ATP8	4	8	FN1	42639	chr2:216236993:-	MT-ATP8	55056	chrM:8486:+	INCL_NON_REF_SPLICE	YES	12322	859	0	0.01	0.0473	0.0946	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	0.01	0.1419	FALSE	0	2	0	3	0	FALSE	ACH-000262
UOK101_KIDNEY	FN1--MT-ATP8	4	7	FN1	30137	chr2:216251511:-	MT-ATP8	55044	chrM:8474:+	INCL_NON_REF_SPLICE	YES	11892	113	0	0.09	0.0473	0.0828	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	0.09	0.1301	FALSE	0	5	0	4	0	FALSE	ACH-000262
UOK101_KIDNEY	FN1--MT-ATP8	3	9	FN1	30131	chr2:216251517:-	MT-ATP8	55000	chrM:8430:+	INCL_NON_REF_SPLICE	NO	11675	0	0	1	0.0355	0.1064	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	1	0.1419	FALSE	0	5	0	4	0	FALSE	ACH-000262
UOK101_KIDNEY	COL1A1--COL7A1	5	0	COL1A1	14913	chr17:48264862:-	COL7A1	50547	chr3:48603986:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	UOK101_KIDNEY	1	1	0.0591	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	FN1--MT-ATP8	3	8	FN1	30141	chr2:216251507:-	MT-ATP8	55010	chrM:8440:+	INCL_NON_REF_SPLICE	YES	12176	0	0	1	0.0355	0.0946	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	1	0.1301	FALSE	0	5	0	4	0	FALSE	ACH-000262
UOK101_KIDNEY	IGFBP7--MT-ND4L	5	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UOK101_KIDNEY	1	1	0.0591	FALSE	1	0	0	30	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	5	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	1	1	0.0591	FALSE	231	204	14	283	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	4	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	15321	501	0	0.01	0.0473	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	0.01	0.0591	FALSE	231	204	14	283	0	FALSE	ACH-000262
UOK101_KIDNEY	FN1--MT-ATP8	4	0	FN1	8087	chr2:216289946:-	MT-ATP8	55042	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	1	1	0.0473	FALSE	0	0	0	3	0	FALSE	ACH-000262
UOK101_KIDNEY	FN1--PKM	4	0	FN1	5747	chr2:216295556:-	PKM	65445	chr15:72501158:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	UOK101_KIDNEY	1	1	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	FN1--PKM	4	0	FN1	5768	chr2:216295535:-	PKM	65468	chr15:72501135:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	UOK101_KIDNEY	1	1	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	UOK101_KIDNEY	1	1	0.0473	TRUE	22	156	2	142	0	FALSE	ACH-000262
UOK101_KIDNEY	EEF2--FN1	3	3	EEF2	3531	chr19:3982937:-	FN1	13363	chr2:216300791:-	INCL_NON_REF_SPLICE	YES	4455	0	0	1	0.0355	0.0355	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.08%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	UOK101_KIDNEY	0	1	0.071	FALSE	0	0	0	2	0	FALSE	ACH-000262
UOK101_KIDNEY	CALM3--MT-ND4L	3	2	CALM3	8079	chr19:47113581:+	MT-ND4L	11550	chrM:10471:+	INCL_NON_REF_SPLICE	YES	271	0	0.02	1	0.0355	0.0237	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UOK101_KIDNEY	0.02	1	0.0592	FALSE	1	1	0	107	0	FALSE	ACH-000262
UOK101_KIDNEY	AP000525.9--LA16c-60G3.6	3	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	12	0	0.25	1	0.0355	0.0118	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	UOK101_KIDNEY	0.25	1	0.0473	TRUE	0	42	0	133	42	FALSE	ACH-000262
UOK101_KIDNEY	COL1A1--COL7A1	3	1	COL1A1	13037	chr17:48266738:-	COL7A1	31774	chr3:48623052:-	ONLY_REF_SPLICE	NO	3579	168	0	0.02	0.0355	0.0118	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	UOK101_KIDNEY	0	0.02	0.0473	FALSE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	3	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14943	81	0	0.05	0.0355	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	0.05	0.0473	FALSE	230	198	14	283	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	3	1	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	NO	15402	0	0	1	0.0355	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	1	0.0473	FALSE	231	204	14	283	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	3	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	15321	0	0	1	0.0355	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	0	1	0.0473	FALSE	231	204	14	283	0	FALSE	ACH-000262
UOK101_KIDNEY	NPM1P24--SET	3	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	54	1511	0.07	0	0.0355	0.0118	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	UOK101_KIDNEY	0	0.07	0.0473	FALSE	0	0	0	434	0	FALSE	ACH-000262
UOK101_KIDNEY	SLC1A5--MT-ND4L	3	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	764	0	0.01	1	0.0355	0.0118	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UOK101_KIDNEY	0.01	1	0.0473	FALSE	0	0	0	189	0	FALSE	ACH-000262
UOK101_KIDNEY	MDM2--IL22	1	8	MDM2	2117	chr12:69203072:+	IL22	22500	chr12:68647274:-	ONLY_REF_SPLICE	YES	729	1	0.01	0.9	0.0118	0.0946	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,IL22->Oncogene{Bushman},chr12:68642022-68647387:-,interleukin_22	UOK101_KIDNEY	0.01	0.9	0.1064	TRUE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-ND4--MT-ATP8	3	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UOK101_KIDNEY	1	1	0.0355	FALSE	231	205	14	283	0	FALSE	ACH-000262
UOK101_KIDNEY	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UOK101_KIDNEY	1	1	0.0355	FALSE	462	80	0	856	0	FALSE	ACH-000262
UOK101_KIDNEY	NCOR2--UBC	3	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	UOK101_KIDNEY	1	1	0.0355	TRUE	145	312	16	51	0	FALSE	ACH-000262
UOK101_KIDNEY	PRPF19--MXRA8	3	0	PRPF19	4335	chr11:60670223:-	MXRA8	19772	chr1:1288730:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	PRPF19->chr11:60658202-60674060:-,pre-mRNA_processing_factor_19,MXRA8->chr1:1288069-1297157:-,matrix-remodelling_associated_8	UOK101_KIDNEY	1	1	0.0355	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	YWHAZ--ZNF706	3	0	YWHAZ	2460	chr8:101964157:-	ZNF706	24352	chr8:102213971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0	GTEx_FI:{Skin=[count:2=pct:0.6],Blood=[count:2=pct:1.1],Esophagus=[count:1=pct:0.2],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta,ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706	UOK101_KIDNEY	1	1	0.0355	TRUE	5	5	0	7	0	FALSE	ACH-000262
UOK101_KIDNEY	RAP1B--RP11-81H14.2	1	7	RAP1B	1205	chr12:69004823:+	RP11-81H14.2	28602	chr12:68727444:-	ONLY_REF_SPLICE	YES	3227	23	0	0.26	0.0118	0.0828	RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+,RP11-81H14.2->chr12:68726668-68845443:-	UOK101_KIDNEY	0	0.26	0.0946	FALSE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	INTS4--RSF1	2	2	INTS4	12376	chr11:77652226:-	RSF1	39768	chr11:77458173:-	ONLY_REF_SPLICE	YES	63	23	0.06	0.15	0.0237	0.0237	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[57703],INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1	UOK101_KIDNEY	0.06	0.15	0.0474	FALSE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	SLC35E3--NUP107	2	1	SLC35E3	1674	chr12:69140559:+	NUP107	28063	chr12:69109407:+	ONLY_REF_SPLICE	YES	613	1813	0	0	0.0237	0.0118	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[3101],SLC35E3->chr12:69139886-69187508:+,solute_carrier_family_35_member_E3,NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa	UOK101_KIDNEY	0	0	0.0355	FALSE	0	0	0	3	0	FALSE	ACH-000262
UOK101_KIDNEY	AC024560.3--TDP1	2	0	AC024560.3	9962	chr3:197340096:-	TDP1	27383	chr14:90437519:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	AC024560.3->chr3:197305084-197354777:-,TDP1->chr14:90421283-90511106:+,tyrosyl-DNA_phosphodiesterase_1	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	B2M--TPM1	2	0	B2M	1137	chr15:45003811:+	TPM1	16378	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	UOK101_KIDNEY	1	1	0.0237	TRUE	0	1	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	C11orf84--GANAB	2	0	C11orf84	1426	chr11:63581285:+	GANAB	13354	chr11:62402472:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	C11orf84->chr11:63580860-63595190:+,chromosome_11_open_reading_frame_84,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	CCDC23--FAM192A	2	0	CCDC23	1853	chr1:43282102:-	FAM192A	13789	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	CCDC23->chr1:43272723-43282954:-,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	CEP72--TRIP13	2	0	CEP72	1172	chr5:612558:+	TRIP13	31374	chr5:907245:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	CEP72->centrosomal_protein_72,chr5:612387-667283:+,TRIP13->chr5:892758-919472:+,thyroid_hormone_receptor_interactor_13	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	CLN5--LRCH1	2	0	CLN5	2612	chr13:77566406:+	LRCH1	29332	chr13:47297356:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	CLN5->ceroid-lipofuscinosis,_neuronal_5,chr13:77564795-77576652:+,LRCH1->chr13:47127303-47327175:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_1	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	CYFIP1--SNRPN	2	0	CYFIP1	1777	chr15:22892781:+	SNRPN	47943	chr15:25207261:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Artery_-_Aorta=1},CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1,SNRPN->chr15:25068794-25223870:+,small_nuclear_ribonucleoprotein_polypeptide_N	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	FAM13A--MAPK10	2	0	FAM13A	2765	chr4:89978089:-	MAPK10	53647	chr4:87275797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},FAM13A->chr4:89647106-90032549:-,family_with_sequence_similarity_13_member_A,MAPK10->Oncogene{Bushman},chr4:86936276-87515284:-,mitogen-activated_protein_kinase_10	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	FOCAD--MLLT3	2	0	FOCAD	19933	chr9:20823114:+	MLLT3	74224	chr9:20365742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_INVERSION:+:-:[35766],FOCAD->chr9:20658308-20995954:+,focadhesin,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	GALNT2--C1orf198	2	0	GALNT2	2488	chr1:230203153:+	C1orf198	28787	chr1:230991464:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	{Klijn_CCL:Kidney=1},GALNT2->chr1:230193536-230417870:+,polypeptide_N-acetylgalactosaminyltransferase_2,C1orf198->chr1:230972865-231005335:-,chromosome_1_open_reading_frame_198	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	3	0	TRUE	ACH-000262
UOK101_KIDNEY	RAPGEF1--RBCK1	2	0	RAPGEF1	13935	chr9:134497183:-	RBCK1	39457	chr20:398170:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	RAPGEF1->Oncogene{Bushman},Rap_guanine_nucleotide_exchange_factor_1,chr9:134452157-134615461:-,RBCK1->RANBP2-type_and_C3HC4-type_zinc_finger_containing_1,chr20:388142-411610:+	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	RIPK4--HSF2BP	2	0	RIPK4	1247	chr21:43187020:-	HSF2BP	23615	chr21:45012209:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	RIPK4->chr21:43159529-43187266:-,receptor_interacting_serine/threonine_kinase_4,HSF2BP->chr21:44949072-45079374:-,heat_shock_transcription_factor_2_binding_protein	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	SERGEF--NAV2	2	0	SERGEF	1312	chr11:18034398:-	NAV2	50283	chr11:20057505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	SERGEF->chr11:17809595-18034709:-,secretion_regulating_guanine_nucleotide_exchange_factor,NAV2->chr11:19372271-20143144:+,neuron_navigator_2	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	TBC1D8--SEPT11	2	0	TBC1D8	22555	chr2:101643845:-	SEPT11	37088	chr4:77916934:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	TBC1D8->TBC1_domain_family_member_8,chr2:101624079-101869328:-,SEPT11->chr4:77870856-77961537:+,septin_11	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	ZFAS1--HSPBAP1	2	0	ZFAS1	2031	chr20:47895745:+	HSPBAP1	20772	chr3:122459960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,HSPBAP1->HSPB1_associated_protein_1,Oncogene{Bushman},chr3:122458846-122512671:-	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	ZNF451--FAM101A	2	0	ZNF451	2330	chr6:56955072:+	FAM101A	38911	chr12:124458433:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451,FAM101A->chr12:124457788-124800570:+,family_with_sequence_similarity_101_member_A	UOK101_KIDNEY	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000262
UOK101_KIDNEY	TIMM23--RP11-464F9.1	1	2	TIMM23	5841	chr10:51610393:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	579	2	0.01	0.6	0.0118	0.0237	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	UOK101_KIDNEY	0.01	0.6	0.0355	FALSE	1	12	0	11	0	FALSE	ACH-000262
UOK101_KIDNEY	ARHGAP22--MAPK8	1	1	ARHGAP22	5671	chr10:49790998:-	MAPK8	43094	chr10:49642927:+	ONLY_REF_SPLICE	NO	29	111	0.06	0.02	0.0118	0.0118	LOCAL_INVERSION:-:+:[6674],ARHGAP22->Rho_GTPase_activating_protein_22,chr10:49654077-49864310:-,MAPK8->Oncogene{Bushman},chr10:49514698-49647403:+,mitogen-activated_protein_kinase_8	UOK101_KIDNEY	0.02	0.06	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	EIF2AK1--TPM1	1	1	EIF2AK1	13359	chr7:6077055:-	TPM1	29319	chr15:63349184:+	ONLY_REF_SPLICE	YES	758	5850	0	0	0.0118	0.0118	EIF2AK1->chr7:6061881-6098861:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_1,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	UOK101_KIDNEY	0	0	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	EPS8--DERA	1	1	EPS8	3576	chr12:15942095:-	DERA	39639	chr12:16109870:+	ONLY_REF_SPLICE	NO	171	20	0.01	0.09	0.0118	0.0118	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:-:+:[28843],EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase	UOK101_KIDNEY	0.01	0.09	0.0236	FALSE	0	4	0	3	0	FALSE	ACH-000262
UOK101_KIDNEY	INTS4--RSF1	1	1	INTS4	11304	chr11:77666988:-	RSF1	39768	chr11:77458173:-	ONLY_REF_SPLICE	YES	60	23	0.03	0.08	0.0118	0.0118	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[57703],INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1	UOK101_KIDNEY	0.03	0.08	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	POLE4--RP11-355F16.1	1	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	205	0	0.01	1	0.0118	0.0118	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	UOK101_KIDNEY	0.01	1	0.0236	FALSE	5	7	0	37	0	FALSE	ACH-000262
UOK101_KIDNEY	PSMB5--KCNRG	1	1	PSMB5	2863	chr14:23502577:-	KCNRG	12483	chr13:50594350:+	ONLY_REF_SPLICE	YES	740	1	0	0.67	0.0118	0.0118	PSMB5->chr14:23485752-23504439:-,proteasome_subunit_beta_5,KCNRG->chr13:50589390-50595058:+,potassium_channel_regulator	UOK101_KIDNEY	0	0.67	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0118	0.0118	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	UOK101_KIDNEY	1	1	0.0236	FALSE	93	270	15	244	0	FALSE	ACH-000262
UOK101_KIDNEY	TASP1--RP5-1069C8.2	1	1	TASP1	21244	chr20:13296617:-	RP5-1069C8.2	29257	chr20:12921584:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0118	0.0118	TASP1->chr20:13246709-13619587:-,taspase_1,RP5-1069C8.2->chr20:12845850-12933167:-	UOK101_KIDNEY	1	1	0.0236	TRUE	1	0	0	3	0	TRUE	ACH-000262
UOK101_KIDNEY	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0118	0.0118	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	UOK101_KIDNEY	0.67	1	0.0236	TRUE	62	24	1	171	0	FALSE	ACH-000262
UOK101_KIDNEY	UGCG--NUP107	1	1	UGCG	7130	chr9:114688776:+	NUP107	29310	chr12:69109407:+	ONLY_REF_SPLICE	YES	1026	1813	0	0	0.0118	0.0118	UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+,NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa	UOK101_KIDNEY	0	0	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000262
UOK101_KIDNEY	VPS13C--ANXA2	1	1	VPS13C	1199	chr15:62352474:-	ANXA2	110526	chr15:60656722:-	ONLY_REF_SPLICE	NO	15	5951	0.12	0	0.0118	0.0118	VPS13C->chr15:62144588-62352672:-,vacuolar_protein_sorting_13_homolog_C,ANXA2->annexin_A2,chr15:60639333-60695082:-	UOK101_KIDNEY	0	0.12	0.0236	FALSE	0	0	0	2	0	FALSE	ACH-000262
UOK101_KIDNEY	WDR37--GDI2	1	1	WDR37	2669	chr10:1102908:+	GDI2	28450	chr10:5842668:-	ONLY_REF_SPLICE	YES	21	1020	0.09	0	0.0118	0.0118	WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	UOK101_KIDNEY	0	0.09	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000262
HCC1395_BREAST	EIF3K--CYP39A1	234	89	EIF3K	8744	chr19:39123318:+	CYP39A1	17303	chr6:46607405:-	ONLY_REF_SPLICE	YES	188	27	0.63	0.92	2.7481	1.0452	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},EIF3K->chr19:39109735-39127595:+,eukaryotic_translation_initiation_factor_3_subunit_K,CYP39A1->chr6:46517541-46620523:-,cytochrome_P450_family_39_subfamily_A_member_1	HCC1395_BREAST	0.63	0.92	3.7933	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	TIMM23B--LINC00843	122	38	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4327	0.4463	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1395_BREAST	1	1	1.879	TRUE	508	994	45	981	0	FALSE	ACH-000699
HCC1395_BREAST	PLA2R1--RBMS1	105	34	PLA2R1	18312	chr2:160832579:-	RBMS1	50471	chr2:161159998:-	ONLY_REF_SPLICE	YES	12	91	0.92	0.6	1.2331	0.3993	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},PLA2R1->chr2:160788519-160919121:-,phospholipase_A2_receptor_1,RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-	HCC1395_BREAST	0.6	0.92	1.6324	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	TIMM23--RP11-464F9.1	73	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	130	4	0.38	0.95	0.8573	0.0705	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC1395_BREAST	0.38	0.95	0.9278	TRUE	519	3926	326	965	0	FALSE	ACH-000699
HCC1395_BREAST	RAB7A--LRCH3	56	51	RAB7A	1238	chr3:128445202:+	LRCH3	30748	chr3:197592294:+	ONLY_REF_SPLICE	YES	710	12	0.13	0.9	0.6577	0.5989	RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,LRCH3->chr3:197518097-197615307:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_3	HCC1395_BREAST	0.13	0.9	1.2566	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	TMEM104--RAB37	61	17	TMEM104	7995	chr17:72791771:+	RAB37	19024	chr17:72725395:+	ONLY_REF_SPLICE	YES	32	0	0.71	1	0.7164	0.1996	LOCAL_REARRANGEMENT:+:[29148],TMEM104->Oncogene{Bushman},chr17:72772622-72835918:+,transmembrane_protein_104,RAB37->RAB37,_member_RAS_oncogene_family,chr17:72666717-72743474:+	HCC1395_BREAST	0.71	1	0.916	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	EIF3K--CYP39A1	38	55	EIF3K	8744	chr19:39123318:+	CYP39A1	17363	chr6:46607345:-	INCL_NON_REF_SPLICE	YES	188	21	0.33	0.82	0.4463	0.6459	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},EIF3K->chr19:39109735-39127595:+,eukaryotic_translation_initiation_factor_3_subunit_K,CYP39A1->chr6:46517541-46620523:-,cytochrome_P450_family_39_subfamily_A_member_1	HCC1395_BREAST	0.33	0.82	1.0922	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	EIF3K--CYP39A1	5	89	EIF3K	8744	chr19:39123318:+	CYP39A1	17287	chr6:46607421:-	INCL_NON_REF_SPLICE	YES	188	29	0.33	0.76	0.0587	1.0452	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},EIF3K->chr19:39109735-39127595:+,eukaryotic_translation_initiation_factor_3_subunit_K,CYP39A1->chr6:46517541-46620523:-,cytochrome_P450_family_39_subfamily_A_member_1	HCC1395_BREAST	0.33	0.76	1.1039	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	MT-TA--MT-TC	26	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3053	0.047	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1395_BREAST	1	1	0.3523	FALSE	462	80	0	856	0	FALSE	ACH-000699
HCC1395_BREAST	MDH1--RP11-357C3.3	24	6	MDH1	9656	chr2:63826426:+	RP11-357C3.3	27403	chrX:62619783:-	ONLY_REF_SPLICE	YES	287	0	0.09	1	0.2819	0.0705	MDH1->chr2:63815743-63834331:+,malate_dehydrogenase_1,RP11-357C3.3->chrX:62563106-62780951:-	HCC1395_BREAST	0.09	1	0.3524	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	PRRC2B--FUBP3	24	0	PRRC2B	1171	chr9:134269650:+	FUBP3	46698	chr9:133485341:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2819	0	PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,FUBP3->chr9:133454352-133513739:+,far_upstream_element_binding_protein_3	HCC1395_BREAST	1	1	0.2819	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	E2F3--PKD2	22	6	E2F3	2489	chr6:20404063:+	PKD2	18706	chr4:88957372:+	ONLY_REF_SPLICE	YES	17	11	0.62	0.72	0.2584	0.0705	E2F3->E2F_transcription_factor_3,Oncogene{Bushman},chr6:20402398-20493941:+,PKD2->chr4:88928820-88998929:+,polycystin_2,_transient_receptor_potential_cation_channel	HCC1395_BREAST	0.62	0.72	0.3289	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	MFSD3--MROH1	19	15	MFSD3	2830	chr8:145736286:+	MROH1	16924	chr8:145254025:+	ONLY_REF_SPLICE	YES	93	78	0.27	0.3	0.2231	0.1762	MFSD3->chr8:145734457-145736596:+,major_facilitator_superfamily_domain_containing_3,MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1	HCC1395_BREAST	0.27	0.3	0.3993	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	OR51S1--TP53I11	21	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2466	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HCC1395_BREAST	1	1	0.2466	TRUE	402	216	10	229	0	FALSE	ACH-000699
HCC1395_BREAST	GNA12--CARD11	18	8	GNA12	1472	chr7:2883487:-	CARD11	19146	chr7:2998265:-	ONLY_REF_SPLICE	YES	76	0	0.25	1	0.2114	0.094	LOCAL_REARRANGEMENT:-:[61817],GNA12->G_protein_subunit_alpha_12,Oncogene{Bushman},chr7:2767746-2883958:-,CARD11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},caspase_recruitment_domain_family_member_11,chr7:2945775-3083579:-	HCC1395_BREAST	0.25	1	0.3054	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	RP11-680G10.1--GSE1	17	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	20	1	0.49	0.1996	0.0235	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1395_BREAST	0.49	1	0.2231	TRUE	465	1949	224	605	0	FALSE	ACH-000699
HCC1395_BREAST	RP11-123O10.4--GRIP1	15	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1762	0.0705	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1395_BREAST	1	1	0.2467	FALSE	416	2512	207	587	0	FALSE	ACH-000699
HCC1395_BREAST	RP11-680G10.1--GSE1	15	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.67	0.1762	0.0587	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1395_BREAST	0.67	1	0.2349	TRUE	458	1351	185	561	0	FALSE	ACH-000699
HCC1395_BREAST	C15orf57--CBX3	12	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	21	40	0.55	0.39	0.1409	0.1644	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1395_BREAST	0.39	0.55	0.3053	TRUE	267	562	48	632	0	FALSE	ACH-000699
HCC1395_BREAST	MT-ND6--MT-TE	14	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1644	0.0235	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1395_BREAST	1	1	0.1879	FALSE	499	1288	110	792	0	FALSE	ACH-000699
HCC1395_BREAST	EIF3K--CYP39A1	2	48	EIF3K	8562	chr19:39123136:+	CYP39A1	17303	chr6:46607405:-	ONLY_REF_SPLICE	YES	382	27	0.12	0.65	0.0235	0.5637	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},EIF3K->chr19:39109735-39127595:+,eukaryotic_translation_initiation_factor_3_subunit_K,CYP39A1->chr6:46517541-46620523:-,cytochrome_P450_family_39_subfamily_A_member_1	HCC1395_BREAST	0.12	0.65	0.5872	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	UNC5C--RP11-681L8.1	13	1	UNC5C	4943	chr4:96199410:-	RP11-681L8.1	33527	chr4:98313879:-	ONLY_REF_SPLICE	YES	13	0	0.52	1	0.1527	0.0117	UNC5C->chr4:96083655-96470357:-,unc-5_netrin_receptor_C,RP11-681L8.1->chr4:98255786-98554974:-	HCC1395_BREAST	0.52	1	0.1644	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	ZNF646--CTF1	12	3	ZNF646	6829	chr16:31091711:+	CTF1	17015	chr16:30914597:+	INCL_NON_REF_SPLICE	YES	33	0	0.31	1	0.1409	0.0352	ZNF646->chr16:31085743-31095517:+,zinc_finger_protein_646,CTF1->cardiotrophin_1,chr16:30907928-30914881:+	HCC1395_BREAST	0.31	1	0.1761	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	MT-ND6--MT-TE	10	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1174	0.1174	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1395_BREAST	1	1	0.2348	FALSE	499	1288	110	792	0	FALSE	ACH-000699
HCC1395_BREAST	EFTUD2--KIF18B	9	12	EFTUD2	19105	chr17:42942298:-	KIF18B	41271	chr17:43006392:-	ONLY_REF_SPLICE	YES	119	83	0.15	0.2	0.1057	0.1409	LOCAL_REARRANGEMENT:-:[25047],EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2,KIF18B->chr17:43002077-43025082:-,kinesin_family_member_18B	HCC1395_BREAST	0.15	0.2	0.2466	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	TBC1D16--AC012354.6	10	8	TBC1D16	3895	chr17:77983959:-	AC012354.6	30505	chr2:45193557:+	ONLY_REF_SPLICE	YES	55	0	0.25	1	0.1174	0.094	TBC1D16->TBC1_domain_family_member_16,chr17:77906142-78009647:-,AC012354.6->chr2:45181803-45195901:+	HCC1395_BREAST	0.25	1	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	MT-ND4--MT-ATP8	11	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8247	4	0	0.75	0.1292	0.0117	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1395_BREAST	0	0.75	0.1409	FALSE	230	193	14	283	0	FALSE	ACH-000699
HCC1395_BREAST	CTD-2337A12.1--CAST	11	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1292	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HCC1395_BREAST	1	1	0.1292	TRUE	347	1186	183	220	0	FALSE	ACH-000699
HCC1395_BREAST	RAB7A--LRCH3	7	16	RAB7A	1238	chr3:128445202:+	LRCH3	32545	chr3:197597031:+	ONLY_REF_SPLICE	YES	710	17	0.03	0.57	0.0822	0.1879	RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,LRCH3->chr3:197518097-197615307:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_3	HCC1395_BREAST	0.03	0.57	0.2701	TRUE	0	0	0	1	0	FALSE	ACH-000699
HCC1395_BREAST	KPNA1--EEFSEC	10	2	KPNA1	12938	chr3:122168421:-	EEFSEC	27410	chr3:127965679:+	ONLY_REF_SPLICE	YES	20	18	0.38	0.4	0.1174	0.0235	KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1,EEFSEC->chr3:127872297-128127485:+,eukaryotic_elongation_factor,_selenocysteine-tRNA-specific	HCC1395_BREAST	0.38	0.4	0.1409	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	MT-ND4--MT-ATP8	9	2	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11584	43	0	0.2	0.1057	0.0235	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1395_BREAST	0	0.2	0.1292	FALSE	231	217	16	283	0	FALSE	ACH-000699
HCC1395_BREAST	EIF3K--CYP39A1	2	28	EIF3K	4528	chr19:39116742:+	CYP39A1	17303	chr6:46607405:-	ONLY_REF_SPLICE	YES	472	27	0.06	0.53	0.0235	0.3288	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},EIF3K->chr19:39109735-39127595:+,eukaryotic_translation_initiation_factor_3_subunit_K,CYP39A1->chr6:46517541-46620523:-,cytochrome_P450_family_39_subfamily_A_member_1	HCC1395_BREAST	0.06	0.53	0.3523	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	RNGTT--RPF1	9	0	RNGTT	10414	chr6:89559474:-	RPF1	24168	chr1:84946639:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1057	0	RNGTT->RNA_guanylyltransferase_and_5'-phosphatase,chr6:89319985-89673348:-,RPF1->chr1:84944942-84963473:+,ribosome_production_factor_1_homolog	HCC1395_BREAST	1	1	0.1057	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	C15orf57--CBX3	6	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	20	42	0.44	0.28	0.0705	0.1174	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1395_BREAST	0.28	0.44	0.1879	TRUE	267	562	48	632	0	FALSE	ACH-000699
HCC1395_BREAST	FOSL2--BRE	8	2	FOSL2	2375	chr2:28616689:+	BRE	27186	chr2:28460069:+	ONLY_REF_SPLICE	YES	57	43	0.15	0.19	0.094	0.0235	GTEx_FI:{Blood=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2]},GTEx_v2:{count=2;pct=0.02%;dist=Vagina=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[53547],FOSL2->FOS_like_2,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr2:28615315-28640179:+,BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+	HCC1395_BREAST	0.15	0.19	0.1175	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	MT-ND6--MT-TE	5	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0.1292	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1395_BREAST	1	1	0.1879	FALSE	499	1288	110	792	0	FALSE	ACH-000699
HCC1395_BREAST	TBC1D16--AC012354.6	7	3	TBC1D16	3895	chr17:77983959:-	AC012354.6	31783	chr2:45194835:+	INCL_NON_REF_SPLICE	YES	55	4	0.15	0.71	0.0822	0.0352	TBC1D16->TBC1_domain_family_member_16,chr17:77906142-78009647:-,AC012354.6->chr2:45181803-45195901:+	HCC1395_BREAST	0.15	0.71	0.1174	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	MT-ND6--MT-TE	7	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0822	0.0235	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1395_BREAST	1	1	0.1057	FALSE	499	1288	110	792	0	FALSE	ACH-000699
HCC1395_BREAST	E2F3--PKD2	5	8	E2F3	2489	chr6:20404063:+	PKD2	18622	chr4:88957288:+	ONLY_REF_SPLICE	YES	17	12	0.43	0.52	0.0587	0.094	E2F3->E2F_transcription_factor_3,Oncogene{Bushman},chr6:20402398-20493941:+,PKD2->chr4:88928820-88998929:+,polycystin_2,_transient_receptor_potential_cation_channel	HCC1395_BREAST	0.43	0.52	0.1527	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0822	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1395_BREAST	1	1	0.0822	FALSE	462	80	0	856	0	FALSE	ACH-000699
HCC1395_BREAST	LMF1--FOXK2	6	3	LMF1	2386	chr16:1020788:-	FOXK2	44063	chr17:80559179:+	ONLY_REF_SPLICE	YES	25	115	0.26	0.07	0.0705	0.0352	LMF1->Oncogene{Bushman},chr16:903634-1031318:-,lipase_maturation_factor_1,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	HCC1395_BREAST	0.07	0.26	0.1057	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	OSBPL9--RP11-191G24.1	6	3	OSBPL9	8120	chr1:52179751:+	RP11-191G24.1	39734	chr1:52026554:+	ONLY_REF_SPLICE	YES	69	0	0.12	1	0.0705	0.0352	LOCAL_REARRANGEMENT:+:[15550],OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,RP11-191G24.1->chr1:51983981-52027301:+	HCC1395_BREAST	0.12	1	0.1057	TRUE	0	0	0	2	0	TRUE	ACH-000699
HCC1395_BREAST	RP11-83A24.2--KCNQ5	6	3	RP11-83A24.2	1350	chr4:140374839:-	KCNQ5	32163	chr6:73900296:+	ONLY_REF_SPLICE	YES	3	4	0.75	0.69	0.0705	0.0352	RP11-83A24.2->chr4:140333081-140375188:-,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	HCC1395_BREAST	0.69	0.75	0.1057	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	ADORA2B--UBB	6	2	ADORA2B	1667	chr17:15848897:+	UBB	8656	chr17:16285216:+	ONLY_REF_SPLICE	YES	170	325	0.04	0.02	0.0705	0.0235	ADORA2B->adenosine_A2b_receptor,chr17:15848231-15879060:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	HCC1395_BREAST	0.02	0.04	0.094	TRUE	0	1	0	5	1	FALSE	ACH-000699
HCC1395_BREAST	MT-ND4--MT-ATP8	6	2	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11012	43	0	0.16	0.0705	0.0235	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1395_BREAST	0	0.16	0.094	FALSE	231	217	16	283	0	FALSE	ACH-000699
HCC1395_BREAST	MT-ND4--MT-ATP8	6	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	10871	0	0	1	0.0705	0.0117	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1395_BREAST	0	1	0.0822	FALSE	231	205	14	283	0	FALSE	ACH-000699
HCC1395_BREAST	MT-ND4--MT-ATP8	6	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	8247	3	0	0.7	0.0705	0.0117	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1395_BREAST	0	0.7	0.0822	FALSE	230	193	14	283	0	FALSE	ACH-000699
HCC1395_BREAST	MT-TA--MT-TC	5	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0.047	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1395_BREAST	1	1	0.1057	FALSE	462	80	0	856	0	FALSE	ACH-000699
HCC1395_BREAST	GCLM--ABCA4	5	1	GCLM	7532	chr1:94360170:-	ABCA4	22343	chr1:94548997:-	ONLY_REF_SPLICE	YES	789	0	0.01	1	0.0587	0.0117	LOCAL_REARRANGEMENT:-:[83427],GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit,ABCA4->ATP_binding_cassette_subfamily_A_member_4,chr1:94458393-94586688:-	HCC1395_BREAST	0.01	1	0.0704	FALSE	0	0	0	1	0	FALSE	ACH-000699
HCC1395_BREAST	MT-ND4--MT-ATP8	5	1	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	11727	433	0	0.01	0.0587	0.0117	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1395_BREAST	0	0.01	0.0704	FALSE	231	217	16	283	0	FALSE	ACH-000699
HCC1395_BREAST	MT-ND4--MT-ATP8	5	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9776	4	0	0.6	0.0587	0.0117	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1395_BREAST	0	0.6	0.0704	FALSE	231	205	14	283	0	FALSE	ACH-000699
HCC1395_BREAST	MT-ND4--MT-ATP8	5	1	MT-ND4	1489	chrM:11248:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	10307	0	0	1	0.0587	0.0117	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1395_BREAST	0	1	0.0704	FALSE	231	217	16	283	0	FALSE	ACH-000699
HCC1395_BREAST	UNC5C--STPG2	5	1	UNC5C	4943	chr4:96199410:-	STPG2	46048	chr4:98162249:-	ONLY_REF_SPLICE	YES	13	0	0.32	1	0.0587	0.0117	UNC5C->chr4:96083655-96470357:-,unc-5_netrin_receptor_C,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	HCC1395_BREAST	0.32	1	0.0704	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	AP000525.9--LA16c-60G3.6	5	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HCC1395_BREAST	1	1	0.0587	TRUE	0	42	0	133	42	FALSE	ACH-000699
HCC1395_BREAST	MT-ATP6--MT-CO1	5	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1395_BREAST	1	1	0.0587	FALSE	183	104	9	328	0	FALSE	ACH-000699
HCC1395_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1395_BREAST	1	1	0.0587	FALSE	231	217	16	283	0	FALSE	ACH-000699
HCC1395_BREAST	MT-ND4--MT-ATP8	4	4	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9317	43	0	0.16	0.047	0.047	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1395_BREAST	0	0.16	0.094	FALSE	231	217	16	283	0	FALSE	ACH-000699
HCC1395_BREAST	MT-ND4--MT-ATP8	4	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8998	4	0	0.6	0.047	0.0235	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1395_BREAST	0	0.6	0.0705	FALSE	231	217	16	283	0	FALSE	ACH-000699
HCC1395_BREAST	MT-ND4--MT-ATP8	4	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8169	4	0	0.56	0.047	0.0117	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1395_BREAST	0	0.56	0.0587	FALSE	230	198	14	283	0	FALSE	ACH-000699
HCC1395_BREAST	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.047	0.0117	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1395_BREAST	1	1	0.0587	FALSE	515	4851	409	746	0	FALSE	ACH-000699
HCC1395_BREAST	TIMM23B--LINC00843	4	1	TIMM23B	1257	chr10:51371646:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	245	0	0.02	1	0.047	0.0117	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1395_BREAST	0.02	1	0.0587	TRUE	0	0	0	10	0	FALSE	ACH-000699
HCC1395_BREAST	WARS--DEGS2	4	1	WARS	10783	chr14:100826891:-	DEGS2	26320	chr14:100616047:-	ONLY_REF_SPLICE	YES	275	1	0.02	0.83	0.047	0.0117	WARS->chr14:100800125-100843142:-,tryptophanyl-tRNA_synthetase,DEGS2->chr14:100612756-100626500:-,delta(4)-desaturase,_sphingolipid_2	HCC1395_BREAST	0.02	0.83	0.0587	TRUE	0	0	0	1	0	FALSE	ACH-000699
HCC1395_BREAST	CEP250--FBXO36	4	0	CEP250	1074	chr20:34043058:+	FBXO36	44741	chr2:230875412:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.047	0	CEP250->centrosomal_protein_250,chr20:34042985-34099804:+,FBXO36->F-box_protein_36,chr2:230787018-230877825:+	HCC1395_BREAST	1	1	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	LTBP1--BIRC6	4	0	LTBP1	4216	chr2:33246273:+	BIRC6	53499	chr2:32631567:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.047	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Heart_-_Atrial_Appendage=1},YOSHIHARA_TCGA_num_samples[BRCA:1|LAML:1],LTBP1->chr2:33172039-33624576:+,latent_transforming_growth_factor_beta_binding_protein_1,BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+	HCC1395_BREAST	1	1	0.047	TRUE	0	5	0	1	5	TRUE	ACH-000699
HCC1395_BREAST	MT-ND4--MT-ATP8	3	4	MT-ND4	2281	chrM:12040:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	54	61	0.11	0.1	0.0352	0.047	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1395_BREAST	0.1	0.11	0.0822	FALSE	213	207	15	279	0	FALSE	ACH-000699
HCC1395_BREAST	POU2F1--NME7	3	4	POU2F1	28816	chr1:167385422:+	NME7	62405	chr1:169102055:-	INCL_NON_REF_SPLICE	YES	4	9	0.64	0.44	0.0352	0.047	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-	HCC1395_BREAST	0.44	0.64	0.0822	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	RP11-120D5.1--MID1	3	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	41	0.75	0.13	0.0352	0.0352	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC1395_BREAST	0.13	0.75	0.0704	FALSE	16	356	14	466	0	FALSE	ACH-000699
HCC1395_BREAST	LDLRAD3--PRR5L	3	2	LDLRAD3	5673	chr11:36120011:+	PRR5L	30278	chr11:36415396:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0.0235	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	HCC1395_BREAST	1	1	0.0587	FALSE	12	80	1	10	0	FALSE	ACH-000699
HCC1395_BREAST	MT-ATP6--MT-CO1	3	2	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2292	12773	0	0	0.0352	0.0235	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1395_BREAST	0	0	0.0587	FALSE	183	104	9	328	0	FALSE	ACH-000699
HCC1395_BREAST	CEP250--FBXO36	3	0	CEP250	1079	chr20:34043063:+	FBXO36	44741	chr2:230875412:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	CEP250->centrosomal_protein_250,chr20:34042985-34099804:+,FBXO36->F-box_protein_36,chr2:230787018-230877825:+	HCC1395_BREAST	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	FTH1--GNB2L1	3	0	FTH1	1228	chr11:61734905:-	GNB2L1	10551	chr5:180670807:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-	HCC1395_BREAST	1	1	0.0352	TRUE	0	0	0	2	0	TRUE	ACH-000699
HCC1395_BREAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1098	chrM:8624:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1395_BREAST	1	1	0.0352	FALSE	183	104	9	328	0	FALSE	ACH-000699
HCC1395_BREAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1395_BREAST	1	1	0.0352	FALSE	183	104	9	328	0	FALSE	ACH-000699
HCC1395_BREAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1395_BREAST	1	1	0.0352	FALSE	183	104	9	328	0	FALSE	ACH-000699
HCC1395_BREAST	PRRC2B--FUBP3	3	0	PRRC2B	1171	chr9:134269650:+	FUBP3	46701	chr9:133485344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,FUBP3->chr9:133454352-133513739:+,far_upstream_element_binding_protein_3	HCC1395_BREAST	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	FOSL2--BRE	2	3	FOSL2	3641	chr2:28618643:+	BRE	27186	chr2:28460069:+	ONLY_REF_SPLICE	YES	78	43	0.06	0.1	0.0235	0.0352	GTEx_FI:{Blood=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2]},GTEx_v2:{count=2;pct=0.02%;dist=Vagina=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[53547],FOSL2->FOS_like_2,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr2:28615315-28640179:+,BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+	HCC1395_BREAST	0.06	0.1	0.0587	TRUE	0	0	0	1	0	FALSE	ACH-000699
HCC1395_BREAST	EEFSEC--KPNA1	2	2	EEFSEC	1370	chr3:127872666:+	KPNA1	16100	chr3:122186276:-	ONLY_REF_SPLICE	YES	24	33	0.14	0.11	0.0235	0.0235	EEFSEC->chr3:127872297-128127485:+,eukaryotic_elongation_factor,_selenocysteine-tRNA-specific,KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1	HCC1395_BREAST	0.11	0.14	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	POU2F1--NME7	2	1	POU2F1	27130	chr1:167382351:+	NME7	62405	chr1:169102055:-	ONLY_REF_SPLICE	YES	6	9	0.33	0.25	0.0235	0.0117	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-	HCC1395_BREAST	0.25	0.33	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	APP--UQCRFS1	2	0	APP	6383	chr21:27462259:-	UQCRFS1	33813	chr19:29699065:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,UQCRFS1->chr19:29698173-29704448:-,ubiquinol-cytochrome_c_reductase,_Rieske_iron-sulfur_polypeptide_1	HCC1395_BREAST	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	ARID1B--WTAP	2	0	ARID1B	3738	chr6:157150555:+	WTAP	44901	chr6:160160022:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+,WTAP->Wilms_tumor_1_associated_protein,chr6:160146617-160177351:+	HCC1395_BREAST	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	LDLRAD3--PRR5L	2	0	LDLRAD3	5673	chr11:36120011:+	PRR5L	34366	chr11:36422547:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	HCC1395_BREAST	1	1	0.0235	FALSE	12	71	0	11	0	FALSE	ACH-000699
HCC1395_BREAST	NANS--ANP32B	2	0	NANS	2418	chr9:100823279:+	ANP32B	15934	chr9:100756913:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	LOCAL_REARRANGEMENT:+:[40796],NANS->N-acetylneuraminate_synthase,chr9:100819021-100845357:+,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	HCC1395_BREAST	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	PIPOX--SUPT6H	2	0	PIPOX	1182	chr17:27277712:+	SUPT6H	41930	chr17:27022370:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	PIPOX->chr17:27277531-27384234:+,pipecolic_acid_and_sarcosine_oxidase,SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+	HCC1395_BREAST	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	RAB7A--LRCH3	1	4	RAB7A	1238	chr3:128445202:+	LRCH3	33664	chr3:197598196:+	ONLY_REF_SPLICE	YES	710	38	0.01	0.12	0.0117	0.047	RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,LRCH3->chr3:197518097-197615307:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_3	HCC1395_BREAST	0.01	0.12	0.0587	FALSE	0	0	0	1	0	FALSE	ACH-000699
HCC1395_BREAST	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	16625	chr12:66911756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1395_BREAST	1	1	0.0235	FALSE	0	1	1	3	0	FALSE	ACH-000699
HCC1395_BREAST	SPRED2--GTF2F2	2	0	SPRED2	1676	chr2:65659096:-	GTF2F2	28272	chr13:45857577:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	SPRED2->chr2:65537985-65659771:-,sprouty_related_EVH1_domain_containing_2,GTF2F2->chr13:45694650-45858237:+,general_transcription_factor_IIF_subunit_2	HCC1395_BREAST	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC1395_BREAST	1	1	0.0235	TRUE	5	8	0	33	0	FALSE	ACH-000699
HCC1395_BREAST	TMSB10--ARHGAP29	2	0	TMSB10	1094	chr2:85132842:+	ARHGAP29	7324	chr1:94697199:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-	HCC1395_BREAST	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000699
HCC1395_BREAST	CHD2--SRSF1	1	1	CHD2	6529	chr15:93444529:+	SRSF1	62155	chr17:56082402:-	ONLY_REF_SPLICE	YES	80	249	0.02	0.01	0.0117	0.0117	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	HCC1395_BREAST	0.01	0.02	0.0234	FALSE	1	2	0	9	0	FALSE	ACH-000699
HCC1395_BREAST	GALNS--TECR	1	1	GALNS	14593	chr16:88898406:-	TECR	33890	chr19:14673337:+	ONLY_REF_SPLICE	YES	140	242	0.01	0.01	0.0117	0.0117	GALNS->Oncogene{Bushman},chr16:88880142-88923378:-,galactosamine_(N-acetyl)-6-sulfatase,TECR->chr19:14627897-14676792:+,trans-2,3-enoyl-CoA_reductase	HCC1395_BREAST	0.01	0.01	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000699
HCC1395_BREAST	NAMPT--CTB-111H14.1	1	1	NAMPT	13585	chr7:105902034:-	CTB-111H14.1	31883	chr7:106131576:-	ONLY_REF_SPLICE	NO	1192	0	0	1	0.0117	0.0117	LOCAL_REARRANGEMENT:-:[85925],NAMPT->chr7:105888731-105926772:-,nicotinamide_phosphoribosyltransferase,CTB-111H14.1->chr7:106012697-106410653:-	HCC1395_BREAST	0	1	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000699
HCC1395_BREAST	POLR2J3--GNAS	1	1	POLR2J3	5847	chr7:102207444:-	GNAS	34442	chr20:57470667:+	ONLY_REF_SPLICE	YES	218	999	0.01	0	0.0117	0.0117	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HCC1395_BREAST	0	0.01	0.0234	FALSE	0	0	0	2	0	FALSE	ACH-000699
HCC1395_BREAST	PRR16--CTD-2334D19.1	1	1	PRR16	6887	chr5:119954260:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	NO	16	0	0.11	1	0.0117	0.0117	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HCC1395_BREAST	0.11	1	0.0234	FALSE	0	2	0	14	0	FALSE	ACH-000699
HCC1395_BREAST	PRR16--CTD-2334D19.1	1	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	NO	15	0	0.12	1	0.0117	0.0117	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HCC1395_BREAST	0.12	1	0.0234	FALSE	56	216	12	147	0	FALSE	ACH-000699
HCC1395_BREAST	PRR16--CTD-2334D19.1	1	1	PRR16	6887	chr5:119954260:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.0117	0.0117	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HCC1395_BREAST	0.11	1	0.0234	FALSE	0	2	0	3	0	FALSE	ACH-000699
HCC1395_BREAST	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0117	0.0117	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1395_BREAST	1	1	0.0234	FALSE	93	270	15	244	0	FALSE	ACH-000699
HCC1395_BREAST	TCF25--GALNS	1	1	TCF25	9175	chr16:89958683:+	GALNS	37166	chr16:88902675:-	ONLY_REF_SPLICE	YES	132	99	0.01	0.02	0.0117	0.0117	TCF25->chr16:89940000-89977792:+,transcription_factor_25,GALNS->Oncogene{Bushman},chr16:88880142-88923378:-,galactosamine_(N-acetyl)-6-sulfatase	HCC1395_BREAST	0.01	0.02	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000699
U87MG_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	165	45	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.9207	0.5238	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	2.4445	TRUE	508	994	45	981	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	87	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	277	5	0.25	0.95	1.0127	0.0582	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	U87MG_CENTRAL_NERVOUS_SYSTEM	0.25	0.95	1.0709	TRUE	519	3926	326	965	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	SPAG7--CAMTA2	80	18	SPAG7	1153	chr17:4871015:-	CAMTA2	12175	chr17:4886338:-	ONLY_REF_SPLICE	YES	59	44	0.62	0.69	0.9312	0.2095	YOSHIHARA_TCGA_num_samples[BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[120],SPAG7->chr17:4862521-4871167:-,sperm_associated_antigen_7,CAMTA2->calmodulin_binding_transcription_activator_2,chr17:4871287-4890960:-	U87MG_CENTRAL_NERVOUS_SYSTEM	0.62	0.69	1.1407	TRUE	0	2	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	EFEMP2--RP11-905K4.1	55	15	EFEMP2	3436	chr11:65638628:-	RP11-905K4.1	13289	chr18:33532000:-	ONLY_REF_SPLICE	YES	137	1	0.34	0.99	0.6402	0.1746	EFEMP2->EGF_containing_fibulin-like_extracellular_matrix_protein_2,chr11:65633912-65641063:-,RP11-905K4.1->chr18:33531766-33546081:-	U87MG_CENTRAL_NERVOUS_SYSTEM	0.34	0.99	0.8148	TRUE	0	2	1	1	2	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	33	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3841	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.3841	TRUE	7	10	0	216	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-ND5	31	0	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3609	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.3609	FALSE	101	855	57	72	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	30	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3492	0.0349	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.3841	FALSE	416	2512	207	587	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	HLA-A--MT-ND1	23	0	HLA-A	2742	chr6:29910778:+	MT-ND1	8756	chrM:3437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2677	0	HLA-A->chr6:29909037-29913661:+,major_histocompatibility_complex,_class_I,_A,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.2677	FALSE	1	0	0	11	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	19	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2212	0.0116	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.2328	FALSE	499	1288	110	792	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	IL4R--KIAA0556	14	19	IL4R	15911	chr16:27367228:+	KIAA0556	34032	chr16:27689050:+	ONLY_REF_SPLICE	YES	2	11	0.94	0.75	0.163	0.2212	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.75	0.94	0.3842	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	13	21	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	56	33	0.38	0.51	0.1513	0.2444	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	U87MG_CENTRAL_NERVOUS_SYSTEM	0.38	0.51	0.3957	TRUE	267	562	48	632	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	IL4R--KIAA0556	11	16	IL4R	13086	chr16:27364017:+	KIAA0556	34032	chr16:27689050:+	ONLY_REF_SPLICE	YES	2	11	0.93	0.71	0.128	0.1862	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.71	0.93	0.3142	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	PPP1R13L--ZNF541	14	0	PPP1R13L	1058	chr19:45909550:-	ZNF541	31054	chr19:48024911:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.163	0	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,ZNF541->chr19:48023942-48059113:-,zinc_finger_protein_541	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.163	TRUE	0	0	1	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	PPP1R13L--ZNF541	14	0	PPP1R13L	1058	chr19:45909550:-	ZNF541	30714	chr19:48025251:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.163	0	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,ZNF541->chr19:48023942-48059113:-,zinc_finger_protein_541	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.163	TRUE	0	0	1	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	SACS--SGCG	13	0	SACS	1088	chr13:24007754:-	SGCG	37487	chr13:23894776:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1513	0	LOCAL_INVERSION:-:+:[3661],SACS->chr13:23902965-24007841:-,sacsin_molecular_chaperone,SGCG->chr13:23755091-23899304:+,sarcoglycan_gamma	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.1513	TRUE	0	1	0	1	1	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	TAF5L--C1orf95	12	4	TAF5L	3597	chr1:229745853:-	C1orf95	17617	chr1:226784503:+	ONLY_REF_SPLICE	YES	32	0	0.33	1	0.1397	0.0466	TAF5L->TATA-box_binding_protein_associated_factor_5_like,chr1:229728858-229761794:-,C1orf95->chr1:226736501-226796915:+,chromosome_1_open_reading_frame_95	U87MG_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.1863	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	IL4R--KIAA0556	10	7	IL4R	11929	chr16:27357939:+	KIAA0556	34032	chr16:27689050:+	ONLY_REF_SPLICE	YES	11	11	0.61	0.61	0.1164	0.0815	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.61	0.61	0.1979	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	11	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.128	0.0116	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.1396	FALSE	499	1288	110	792	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	CARHSP1--SGCG	10	1	CARHSP1	6858	chr16:8952207:-	SGCG	23012	chr13:23894776:+	ONLY_REF_SPLICE	YES	427	0	0.03	1	0.1164	0.0116	CARHSP1->calcium_regulated_heat_stable_protein_1,chr16:8946799-8962866:-,SGCG->chr13:23755091-23899304:+,sarcoglycan_gamma	U87MG_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.128	TRUE	0	0	0	1	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	6	14	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	53	33	0.27	0.38	0.0698	0.163	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	U87MG_CENTRAL_NERVOUS_SYSTEM	0.27	0.38	0.2328	TRUE	267	562	48	632	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	7	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0815	0.1164	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	U87MG_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.1979	FALSE	499	1288	110	792	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	PPP1R13L--ZNF541	8	4	PPP1R13L	2141	chr19:45908257:-	ZNF541	27907	chr19:48035002:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0931	0.0466	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,ZNF541->chr19:48023942-48059113:-,zinc_finger_protein_541	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.1397	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	7	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.41	1	0.0815	0.0233	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	U87MG_CENTRAL_NERVOUS_SYSTEM	0.41	1	0.1048	FALSE	292	1546	117	613	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	ST3GAL2--COG4	7	0	ST3GAL2	1289	chr16:70472852:-	COG4	32880	chr16:70517872:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0815	0	LOCAL_REARRANGEMENT:-:[41331],ST3GAL2->ST3_beta-galactoside_alpha-2,3-sialyltransferase_2,chr16:70413338-70473140:-,COG4->chr16:70514471-70557468:-,component_of_oligomeric_golgi_complex_4	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0815	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	ARF1--MT-CO1	3	15	ARF1	6856	chr1:228285408:+	MT-CO1	11371	chrM:5914:+	INCL_NON_REF_SPLICE	YES	1298	0	0.01	1	0.0349	0.1746	ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	U87MG_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.2095	FALSE	0	0	0	7	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	BBC3--FCGRT	5	6	BBC3	5388	chr19:47729834:-	FCGRT	13859	chr19:50017139:+	INCL_NON_REF_SPLICE	YES	4	20	0.73	0.35	0.0582	0.0698	BBC3->BCL2_binding_component_3,Oncogene{Bushman},chr19:47724081-47736023:-,FCGRT->Fc_fragment_of_IgG_receptor_and_transporter,chr19:50010073-50029590:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.35	0.73	0.128	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	C1orf194--UQCR10	6	2	C1orf194	3284	chr1:109650635:-	UQCR10	8361	chr22:30163372:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0698	0.0233	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.41%,GTEx_FI:{Testis=[count:16=pct:15.2],Pituitary=[count:4=pct:7.7],Lung=[count:4=pct:2.4],Brain=[count:3=pct:0.5],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Fallopian_Tube=[count:1=pct:16.7],Thyroid=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=13;pct=0.15%;dist=Testis=12,Adipose_-_Subcutaneous=1},C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0931	TRUE	26	6	0	14	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-ND5	6	1	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	1559	1	0	0.0698	0.0116	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	U87MG_CENTRAL_NERVOUS_SYSTEM	0	1	0.0814	FALSE	101	855	57	72	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	EEF2--MT2A	5	4	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	1805	11	0	0.45	0.0582	0.0466	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	U87MG_CENTRAL_NERVOUS_SYSTEM	0	0.45	0.1048	TRUE	1	0	0	19	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-ND5	6	0	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0698	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0698	FALSE	101	855	57	72	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	GTPBP2--POLH	5	3	GTPBP2	7725	chr6:43589740:-	POLH	23884	chr6:43581397:+	ONLY_REF_SPLICE	YES	136	35	0.06	0.19	0.0582	0.0349	NEIGHBORS_OVERLAP:-:+:[13648],GTPBP2->GTP_binding_protein_2,chr6:43573053-43596899:-,POLH->Oncogene{Bushman},chr6:43543887-43586701:+,polymerase_(DNA)_eta	U87MG_CENTRAL_NERVOUS_SYSTEM	0.06	0.19	0.0931	FALSE	0	0	0	1	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	5	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	34	0	0.19	1	0.0582	0.0349	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	U87MG_CENTRAL_NERVOUS_SYSTEM	0.19	1	0.0931	FALSE	125	705	46	456	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	SPAG7--CAMTA2	1	19	SPAG7	2472	chr17:4869696:-	CAMTA2	12175	chr17:4886338:-	ONLY_REF_SPLICE	YES	85	44	0.19	0.31	0.0116	0.2212	YOSHIHARA_TCGA_num_samples[BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[120],SPAG7->chr17:4862521-4871167:-,sperm_associated_antigen_7,CAMTA2->calmodulin_binding_transcription_activator_2,chr17:4871287-4890960:-	U87MG_CENTRAL_NERVOUS_SYSTEM	0.19	0.31	0.2328	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	ARF1--MT-CO1	5	2	ARF1	6843	chr1:228285395:+	MT-CO1	11358	chrM:5901:+	INCL_NON_REF_SPLICE	YES	1316	0	0.01	1	0.0582	0.0233	ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	U87MG_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0815	FALSE	0	0	0	7	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	5	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0582	0.0233	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0815	TRUE	477	1352	189	275	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	SACS--SGCG	5	0	SACS	1088	chr13:24007754:-	SGCG	38611	chr13:23898507:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0582	0	LOCAL_INVERSION:-:+:[3661],SACS->chr13:23902965-24007841:-,sacsin_molecular_chaperone,SGCG->chr13:23755091-23899304:+,sarcoglycan_gamma	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	BBC3--FCGRT	3	7	BBC3	5408	chr19:47729814:-	FCGRT	13857	chr19:50017137:+	INCL_NON_REF_SPLICE	YES	5	21	0.67	0.32	0.0349	0.0815	BBC3->BCL2_binding_component_3,Oncogene{Bushman},chr19:47724081-47736023:-,FCGRT->Fc_fragment_of_IgG_receptor_and_transporter,chr19:50010073-50029590:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.32	0.67	0.1164	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	PPP1R13L--ZNF541	4	3	PPP1R13L	2141	chr19:45908257:-	ZNF541	30714	chr19:48025251:-	ONLY_REF_SPLICE	YES	0	3	1	0.7	0.0466	0.0349	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,ZNF541->chr19:48023942-48059113:-,zinc_finger_protein_541	U87MG_CENTRAL_NERVOUS_SYSTEM	0.7	1	0.0815	TRUE	0	1	0	1	1	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	4	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	84	1	0.07	0.0466	0.0233	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.0699	TRUE	347	1186	183	220	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	DCAF6--IGSF8	4	2	DCAF6	3532	chr1:167921099:+	IGSF8	34353	chr1:160065036:-	ONLY_REF_SPLICE	YES	38	79	0.14	0.07	0.0466	0.0233	DCAF6->DDB1_and_CUL4_associated_factor_6,chr1:167905021-168045081:+,IGSF8->Oncogene{Bushman},chr1:160061130-160068733:-,immunoglobulin_superfamily_member_8	U87MG_CENTRAL_NERVOUS_SYSTEM	0.07	0.14	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	JSRP1--RP11-742N3.1	4	1	JSRP1	1210	chr19:2269549:-	RP11-742N3.1	10417	chr11:82400581:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0.0116	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RP11-742N3.1->chr11:82400571-82400944:+	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	JSRP1--RP11-742N3.1	4	1	JSRP1	1225	chr19:2269534:-	RP11-742N3.1	10430	chr11:82400594:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0.0116	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RP11-742N3.1->chr11:82400571-82400944:+	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	45	0.83	0.1	0.0466	0.0116	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	U87MG_CENTRAL_NERVOUS_SYSTEM	0.1	0.83	0.0582	FALSE	16	356	14	466	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	SFPQ--ACTB	4	0	SFPQ	1338	chr1:35658412:-	ACTB	22349	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	GTEx&tcga_normals:1/3694=0.03%,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0466	TRUE	0	0	0	3	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	VIM--FTH1	4	0	VIM	2083	chr10:17271340:+	FTH1	12349	chr11:61734988:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0466	TRUE	0	0	0	6	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTG1	3	3	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	9263	1	0	0.86	0.0349	0.0349	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	U87MG_CENTRAL_NERVOUS_SYSTEM	0	0.86	0.0698	FALSE	0	0	0	64	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTG1	3	3	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	9389	1	0	0.86	0.0349	0.0349	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	U87MG_CENTRAL_NERVOUS_SYSTEM	0	0.86	0.0698	FALSE	0	0	0	64	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	ACOT7--AL163953.3	3	2	ACOT7	2135	chr1:6453317:-	AL163953.3	31979	chr14:54153917:+	ONLY_REF_SPLICE	YES	178	0	0.03	1	0.0349	0.0233	ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-,AL163953.3->chr14:53635772-54153976:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0582	TRUE	0	0	1	1	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	CSMD2--C1orf94	3	1	CSMD2	18524	chr1:34254201:-	C1orf94	98812	chr1:34673758:+	ONLY_REF_SPLICE	YES	82	139	0.05	0.03	0.0349	0.0116	LOCAL_INVERSION:-:+:[1041],CSMD2->CUB_and_Sushi_multiple_domains_2,chr1:33979609-34631443:-,C1orf94->chr1:34632484-34684732:+,chromosome_1_open_reading_frame_94	U87MG_CENTRAL_NERVOUS_SYSTEM	0.03	0.05	0.0465	TRUE	0	0	0	1	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	JSRP1--RP11-742N3.1	3	1	JSRP1	1213	chr19:2269546:-	RP11-742N3.1	10417	chr11:82400581:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0.0116	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RP11-742N3.1->chr11:82400571-82400944:+	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0465	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	JSRP1--RP11-742N3.1	3	1	JSRP1	5938	chr19:2253719:-	RP11-742N3.1	10419	chr11:82400583:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0.0116	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RP11-742N3.1->chr11:82400571-82400944:+	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0465	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	RP11-155G15.2--RP11-1E3.1	3	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0.0116	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0465	FALSE	46	201	11	112	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	12	1	0.25	0.0349	0.0116	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.25	1	0.0465	TRUE	465	1949	224	605	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-ND5	3	0	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0349	FALSE	101	855	57	72	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	PPP1R13L--ZNF541	3	0	PPP1R13L	1058	chr19:45909550:-	ZNF541	27907	chr19:48035002:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,ZNF541->chr19:48023942-48059113:-,zinc_finger_protein_541	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	PPP1R13L--ZNF541	2	4	PPP1R13L	2141	chr19:45908257:-	ZNF541	27382	chr19:48035527:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0.0466	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,ZNF541->chr19:48023942-48059113:-,zinc_finger_protein_541	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	TAF5L--C1orf95	3	0	TAF5L	3597	chr1:229745853:-	C1orf95	19894	chr1:226789707:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	TAF5L->TATA-box_binding_protein_associated_factor_5_like,chr1:229728858-229761794:-,C1orf95->chr1:226736501-226796915:+,chromosome_1_open_reading_frame_95	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	3	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0349	TRUE	62	24	1	171	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	TUBB4B--FTH1	3	0	TUBB4B	1128	chr9:140135792:+	FTH1	6697	chr11:61734931:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0349	TRUE	0	0	0	6	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	VIM--FTH1	3	0	VIM	2128	chr10:17271385:+	FTH1	12415	chr11:61734922:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0349	TRUE	0	0	0	6	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	VIM--FTH1	3	0	VIM	2124	chr10:17271381:+	FTH1	12402	chr11:61734935:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0349	TRUE	0	0	0	6	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	ACOT7--AL163953.3	2	2	ACOT7	3455	chr1:6445554:-	AL163953.3	31979	chr14:54153917:+	ONLY_REF_SPLICE	YES	379	0	0.01	1	0.0233	0.0233	ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-,AL163953.3->chr14:53635772-54153976:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0466	FALSE	0	0	0	1	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	43	0	0.14	1	0.0116	0.0698	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	U87MG_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.0814	FALSE	164	806	69	479	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.8	0.8	0.0233	0.0233	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.8	0.8	0.0466	FALSE	515	4851	409	746	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	43	4	0.07	0.43	0.0233	0.0116	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	U87MG_CENTRAL_NERVOUS_SYSTEM	0.07	0.43	0.0349	FALSE	8	57	1	47	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	PPP1R13L--ZNF541	2	1	PPP1R13L	2141	chr19:45908257:-	ZNF541	31054	chr19:48024911:-	ONLY_REF_SPLICE	YES	0	6	1	0.33	0.0233	0.0116	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,ZNF541->chr19:48023942-48059113:-,zinc_finger_protein_541	U87MG_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.0349	TRUE	0	1	0	1	1	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	RP11-155G15.2--RP11-1E3.1	2	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	7991	chr5:96856933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0.0116	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0349	FALSE	0	1	1	12	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	ABI1--CSGALNACT2	2	0	ABI1	3560	chr10:27112067:-	CSGALNACT2	21030	chr10:43650345:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,CSGALNACT2->chondroitin_sulfate_N-acetylgalactosaminyltransferase_2,chr10:43633934-43680756:+	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	CNTFR--SPG20OS	2	0	CNTFR	1569	chr9:34589553:-	SPG20OS	15210	chr13:36939637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CNTFR->chr9:34551430-34590121:-,ciliary_neurotrophic_factor_receptor,SPG20OS->chr13:36920568-36943738:+	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	ITGB1--CHM	2	0	ITGB1	7027	chr10:33247073:-	CHM	46791	chrX:85166343:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1,CHM->CHM,_Rab_escort_protein_1,chrX:85116185-85302566:-	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	MICALL1--RP11-82L18.2	2	0	MICALL1	3871	chr22:38308007:+	RP11-82L18.2	23192	chr9:91724043:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	MICALL1->MICAL_like_1,chr22:38301664-38338829:+,RP11-82L18.2->chr9:91703519-91724849:-	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--RP11-781A6.1	2	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	94	160	11	37	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	SSH2--GOSR1	2	0	SSH2	1339	chr17:28256956:-	GOSR1	47325	chr17:28837898:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1	U87MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	BBC3--FCGRT	1	3	BBC3	5401	chr19:47729821:-	FCGRT	20825	chr19:50029267:+	ONLY_REF_SPLICE	YES	4	25	0.5	0.14	0.0116	0.0349	BBC3->BCL2_binding_component_3,Oncogene{Bushman},chr19:47724081-47736023:-,FCGRT->Fc_fragment_of_IgG_receptor_and_transporter,chr19:50010073-50029590:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.14	0.5	0.0465	TRUE	0	0	0	1	0	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	C14orf37--PSMA3	1	2	C14orf37	2258	chr14:58758353:-	PSMA3	24451	chr14:58718837:+	ONLY_REF_SPLICE	NO	0	805	1	0	0.0116	0.0233	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	U87MG_CENTRAL_NERVOUS_SYSTEM	0	1	0.0349	FALSE	1	3	0	9	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	EFEMP2--RP11-905K4.1	1	2	EFEMP2	2349	chr11:65639715:-	RP11-905K4.1	13289	chr18:33532000:-	ONLY_REF_SPLICE	NO	132	1	0.02	0.75	0.0116	0.0233	EFEMP2->EGF_containing_fibulin-like_extracellular_matrix_protein_2,chr11:65633912-65641063:-,RP11-905K4.1->chr18:33531766-33546081:-	U87MG_CENTRAL_NERVOUS_SYSTEM	0.02	0.75	0.0349	TRUE	0	0	0	1	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	0	1	1	0.75	0.0116	0.0233	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	U87MG_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0349	FALSE	93	270	15	244	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0116	0.0233	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0349	FALSE	407	2205	196	549	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0116	0.0233	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0349	FALSE	467	2173	244	435	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	ASB7--UBASH3B	1	1	ASB7	1780	chr15:101143518:+	UBASH3B	19154	chr11:122646927:+	ONLY_REF_SPLICE	YES	16	39	0.11	0.05	0.0116	0.0116	ASB7->ankyrin_repeat_and_SOCS_box_containing_7,chr15:101142739-101191910:+,UBASH3B->chr11:122526383-122685181:+,ubiquitin_associated_and_SH3_domain_containing_B	U87MG_CENTRAL_NERVOUS_SYSTEM	0.05	0.11	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	DCAF6--IGSF8	1	1	DCAF6	3532	chr1:167921099:+	IGSF8	36904	chr1:160062485:-	ONLY_REF_SPLICE	YES	38	142	0.05	0.01	0.0116	0.0116	DCAF6->DDB1_and_CUL4_associated_factor_6,chr1:167905021-168045081:+,IGSF8->Oncogene{Bushman},chr1:160061130-160068733:-,immunoglobulin_superfamily_member_8	U87MG_CENTRAL_NERVOUS_SYSTEM	0.01	0.05	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	DNAJC24--ELP4	1	1	DNAJC24	2020	chr11:31392406:+	ELP4	33979	chr11:31804941:+	ONLY_REF_SPLICE	NO	137	35	0.01	0.05	0.0116	0.0116	NEIGHBORS[77901],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4	U87MG_CENTRAL_NERVOUS_SYSTEM	0.01	0.05	0.0232	FALSE	0	1	0	2	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	KANSL1--LRRC37A2	1	1	KANSL1	8599	chr17:44230270:-	LRRC37A2	36623	chr17:44594728:+	ONLY_REF_SPLICE	NO	36	5	0.05	0.29	0.0116	0.0116	GTEx_FI:{Brain=[count:2=pct:0.3]},KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	U87MG_CENTRAL_NERVOUS_SYSTEM	0.05	0.29	0.0232	TRUE	0	1	0	3	1	TRUE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	13	4	0.13	0.33	0.0116	0.0116	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	U87MG_CENTRAL_NERVOUS_SYSTEM	0.13	0.33	0.0232	FALSE	25	145	6	90	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	RP11-319G9.5--WWOX	1	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	15	1	0.12	0.0116	0.0116	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.12	1	0.0232	FALSE	154	425	28	76	0	FALSE	ACH-000075
U87MG_CENTRAL_NERVOUS_SYSTEM	TAX1BP3--CDK5RAP3	1	1	TAX1BP3	2315	chr17:3567973:-	CDK5RAP3	13280	chr17:46054078:+	ONLY_REF_SPLICE	YES	305	177	0.01	0.01	0.0116	0.0116	TAX1BP3->Tax1_binding_protein_3,chr17:3566196-3571976:-,CDK5RAP3->CDK5_regulatory_subunit_associated_protein_3,chr17:46045176-46059140:+	U87MG_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000075
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	245	165	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	97	28	0.81	0.94	3.5829	2.413	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.94	5.9959	TRUE	0	2	1	16	2	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	72	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0529	0.3071	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.36	TRUE	508	994	45	981	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	62	19	ABL1	1510	chr9:133589842:+	BCR	40306	chr22:23632526:+	ONLY_REF_SPLICE	YES	13	99	0.86	0.45	0.9067	0.2779	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.86	1.1846	TRUE	0	0	0	6	0	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	62	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9067	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9067	TRUE	0	0	0	518	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	2	160	BCR	20761	chr22:23631808:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	97	27	0.63	0.86	0.0292	2.3399	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.86	2.3691	TRUE	0	2	1	16	2	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	41	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	198	2	0.18	0.96	0.5996	0.0292	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.96	0.6288	TRUE	519	3926	326	965	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDEL1--PFAS	26	8	NDEL1	4299	chr17:8339363:+	PFAS	32839	chr17:8161125:+	ONLY_REF_SPLICE	YES	18	34	0.65	0.5	0.3802	0.117	NDEL1->chr17:8316449-8393729:+,nudE_neurodevelopment_protein_1_like_1,PFAS->chr17:8150936-8173809:+,phosphoribosylformylglycinamidine_synthase	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.65	0.4972	TRUE	0	0	0	1	0	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	19	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2779	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2779	FALSE	499	1288	110	792	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00152--AC093616.4	17	7	LINC00152	14196	chr2:87906288:+	AC093616.4	17233	chr2:88000503:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2486	0.1024	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.351	FALSE	0	0	0	14	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	14	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2047	0.0731	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2778	FALSE	499	1288	110	792	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--IGKJ4	12	0	IGKV2-40	1300	chr2:89629887:-	IGKJ4	4319	chr2:89160430:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1755	0	GTEx_FI:{Thyroid=[count:2=pct:1.1],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3]},HGNC_GENEFAM,IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1755	FALSE	7	34	0	4	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	10	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	4	1	0.82	0.1462	0.117	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.2632	FALSE	515	4851	409	746	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	7	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1024	0.1316	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.234	FALSE	407	2205	196	549	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	8	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.117	0.0146	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1316	FALSE	0	24	0	62	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	7	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.41	1	0.1024	0.0585	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	1	0.1609	FALSE	164	806	69	479	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	8	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.117	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.117	TRUE	0	0	0	518	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	7	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	32	1	0.24	0.1024	0.0439	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.1463	TRUE	458	1351	185	561	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	16	CCDC26	6922	chr8:130365050:-	LINC00977	12110	chr8:130235615:-	INCL_NON_REF_SPLICE	YES	34	0	0.36	1	0.0439	0.234	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.2779	TRUE	0	0	0	4	0	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1024	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1024	FALSE	230	198	14	283	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1024	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1024	FALSE	499	1288	110	792	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	4	11	CCDC26	4649	chr8:130411777:-	LINC00977	12110	chr8:130235615:-	INCL_NON_REF_SPLICE	YES	47	0	0.24	1	0.0585	0.1609	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.2194	TRUE	0	0	0	4	0	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	6	1	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0877	0.0146	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1023	FALSE	0	26	0	50	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	6	1	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	206	0	0.03	1	0.0877	0.0146	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.1023	TRUE	61	154	6	19	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	4	6	CCDC26	6922	chr8:130365050:-	LINC00977	13259	chr8:130229652:-	INCL_NON_REF_SPLICE	YES	34	7	0.23	0.59	0.0585	0.0877	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.59	0.1462	TRUE	0	0	0	6	0	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	5	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.39	1	0.0731	0.0292	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.1023	FALSE	125	705	46	456	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	2	13	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	13	102	0.54	0.13	0.0292	0.1901	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.54	0.2193	TRUE	0	2	0	9	2	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0731	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0731	FALSE	13	9	0	364	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	4	MT-ND6	1120	chrM:14554:-	MT-TE	4574	chrM:14694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0585	0.0585	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.117	FALSE	499	1288	110	792	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	6	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0439	0.0877	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.1316	FALSE	499	1288	110	792	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	100	1	0.06	0.0585	0.0292	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0877	TRUE	465	1949	224	605	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	5	MT-ND6	1254	chrM:14420:-	MT-TE	4573	chrM:14695:-	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0439	0.0731	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.117	FALSE	499	1288	110	792	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0.0585	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1024	FALSE	499	1288	110	792	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	3	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0.0439	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0878	FALSE	499	1288	110	792	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00152--AC093616.4	2	6	LINC00152	1278	chr2:87755164:+	AC093616.4	17233	chr2:88000503:+	ONLY_REF_SPLICE	YES	246	0	0.03	1	0.0292	0.0877	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.1169	FALSE	0	0	0	11	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11264	1	0	0.8	0.0439	0.0146	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.8	0.0585	FALSE	231	217	16	283	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	3	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0439	FALSE	13	9	0	364	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1285	chrM:11044:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0439	FALSE	231	205	14	283	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0292	0.0439	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0731	FALSE	16	356	14	466	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0292	0.0292	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0584	FALSE	0	48	1	163	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	5	CCDC26	2447	chr8:130587128:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	51	0	0.11	1	0.0146	0.0731	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0877	TRUE	0	3	0	7	3	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.33	1	0.0292	0.0146	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.0438	FALSE	292	1546	117	613	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	2	1	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	206	1	0.01	0.75	0.0292	0.0146	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.75	0.0438	FALSE	30	67	4	15	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MFI2--DLG1	2	0	MFI2	19362	chr3:196730772:-	DLG1	57048	chr3:196796131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:-:[12744],MFI2->chr3:196715492-196756687:-,DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAP--CPT1A	2	0	SCAP	5265	chr3:47476498:-	CPT1A	45326	chr11:68529155:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	SCAP->SREBF_chaperone,chr3:47455203-47518616:-,CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-324C10.1--NLGN1	1	2	RP11-324C10.1	2877	chr3:172978339:+	NLGN1	14253	chr3:173322069:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0146	0.0292	NEIGHBORS[59319],RP11-324C10.1->chr3:172871527-173054755:+,NLGN1->chr3:173114074-174004434:+,neuroligin_1	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0438	FALSE	0	4	0	4	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFA4--PHF14	1	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	NO	518	22	0	0.08	0.0146	0.0146	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.0292	FALSE	19	32	3	60	0	FALSE	ACH-000983
KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SH3GL1--CHAF1A	1	1	SH3GL1	1224	chr19:4400321:-	CHAF1A	20902	chr19:4422563:+	ONLY_REF_SPLICE	YES	78	138	0.03	0.01	0.0146	0.0146	LOCAL_INVERSION:-:+:[2115],SH3GL1->Oncogene{Bushman},SH3_domain_containing_GRB2_like_1,chr19:4360367-4400544:-,CHAF1A->chr19:4402659-4445015:+,chromatin_assembly_factor_1_subunit_A	KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0292	FALSE	0	0	0	1	0	FALSE	ACH-000983
HCC2218_BREAST	TIMM23B--LINC00843	87	44	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8861	0.4482	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC2218_BREAST	1	1	1.3343	TRUE	508	994	45	981	0	FALSE	ACH-000755
HCC2218_BREAST	EIF3D--PTMA	96	1	EIF3D	14231	chr22:36907550:-	PTMA	22897	chr2:232576646:+	INCL_NON_REF_SPLICE	YES	215	4656	0.31	0.02	0.9778	0.0102	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2218_BREAST	0.02	0.31	0.988	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	MT-TA--MT-TC	93	12	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9473	0.1222	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2218_BREAST	1	1	1.0695	FALSE	462	80	0	856	0	FALSE	ACH-000755
HCC2218_BREAST	POLDIP2--BRIP1	66	19	POLDIP2	2314	chr17:26682821:-	BRIP1	34801	chr17:59793424:-	ONLY_REF_SPLICE	YES	538	280	0.14	0.23	0.6723	0.1935	POLDIP2->chr17:26673659-26684545:-,polymerase_(DNA)_delta_interacting_protein_2,BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-	HCC2218_BREAST	0.14	0.23	0.8658	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	USP32--NLK	55	20	USP32	4918	chr17:58422842:-	NLK	57310	chr17:26499543:+	ONLY_REF_SPLICE	YES	385	52	0.16	0.59	0.5602	0.2037	{Klijn_CCL:Breast=1},USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,NLK->chr17:26368763-26523407:+,nemo_like_kinase	HCC2218_BREAST	0.16	0.59	0.7639	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	TIMM23--RP11-464F9.1	57	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	508	5	0.1	0.92	0.5806	0.0204	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC2218_BREAST	0.1	0.92	0.601	TRUE	519	3926	326	965	0	FALSE	ACH-000755
HCC2218_BREAST	EIF3D--PTMA	55	1	EIF3D	14231	chr22:36907550:-	PTMA	22321	chr2:232576070:+	INCL_NON_REF_SPLICE	YES	215	5394	0.21	0.01	0.5602	0.0102	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2218_BREAST	0.01	0.21	0.5704	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	INTS2--ZNF652	28	26	INTS2	15973	chr17:59967147:-	ZNF652	33579	chr17:47395345:-	ONLY_REF_SPLICE	YES	349	9	0.13	0.86	0.2852	0.2648	INTS2->chr17:59942731-60005377:-,integrator_complex_subunit_2,ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652	HCC2218_BREAST	0.13	0.86	0.55	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	INTS2--VMP1	27	24	INTS2	2665	chr17:60003713:-	VMP1	35219	chr17:57812699:+	ONLY_REF_SPLICE	YES	517	1859	0.09	0.03	0.275	0.2445	INTS2->chr17:59942731-60005377:-,integrator_complex_subunit_2,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HCC2218_BREAST	0.03	0.09	0.5195	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	PLXDC1--TAF13	29	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2954	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCC2218_BREAST	1	1	0.2954	TRUE	7	10	0	216	0	FALSE	ACH-000755
HCC2218_BREAST	NDRG3--RP11-99J16__A.2	24	0	NDRG3	1034	chr20:35374448:-	RP11-99J16__A.2	22595	chr1:230931102:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2445	0	NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-,RP11-99J16__A.2->chr1:230846444-230931238:-	HCC2218_BREAST	1	1	0.2445	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	SSH2--RPL12P38	20	14	SSH2	22667	chr17:27974745:-	RPL12P38	36974	chr17:58511913:-	INCL_NON_REF_SPLICE	YES	20	1	0.63	0.97	0.2037	0.1426	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,RPL12P38->chr17:58511039-58513357:-,ribosomal_protein_L12_pseudogene_38	HCC2218_BREAST	0.63	0.97	0.3463	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	EIF3D--PTMA	22	1	EIF3D	14231	chr22:36907550:-	PTMA	22909	chr2:232576658:+	INCL_NON_REF_SPLICE	YES	215	4418	0.1	0.01	0.2241	0.0102	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2218_BREAST	0.01	0.1	0.2343	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	GRB7--PGAP3	20	7	GRB7	6667	chr17:37900916:+	PGAP3	14862	chr17:37842272:-	ONLY_REF_SPLICE	YES	789	424	0.03	0.06	0.2037	0.0713	LOCAL_INVERSION:+:-:[41130],GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7,PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3	HCC2218_BREAST	0.03	0.06	0.275	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	INTS2--RPS6KB1	18	11	INTS2	6021	chr17:59996761:-	RPS6KB1	40888	chr17:58008983:+	ONLY_REF_SPLICE	YES	286	724	0.09	0.04	0.1833	0.112	{Klijn_CCL:Breast=1},INTS2->chr17:59942731-60005377:-,integrator_complex_subunit_2,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	HCC2218_BREAST	0.04	0.09	0.2953	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	GPRC5C--COMT	20	0	GPRC5C	6435	chr17:72436564:+	COMT	23124	chr22:19950111:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2037	0	GPRC5C->G_protein-coupled_receptor_class_C_group_5_member_C,chr17:72420990-72447792:+,COMT->catechol-O-methyltransferase,chr22:19929130-19957498:+	HCC2218_BREAST	1	1	0.2037	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	SSH2--USP32	16	14	SSH2	22250	chr17:27975162:-	USP32	35595	chr17:58499766:-	INCL_NON_REF_SPLICE	YES	33	0	0.48	1	0.163	0.1426	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32	HCC2218_BREAST	0.48	1	0.3056	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	EIF3D--PTMA	17	1	EIF3D	14231	chr22:36907550:-	PTMA	22346	chr2:232576095:+	INCL_NON_REF_SPLICE	YES	215	4850	0.08	0	0.1732	0.0102	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2218_BREAST	0	0.08	0.1834	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	MT-ND6--MT-TE	16	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.163	0.0306	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2218_BREAST	1	1	0.1936	FALSE	499	1288	110	792	0	FALSE	ACH-000755
HCC2218_BREAST	PGAP3--PPM1D	13	11	PGAP3	4973	chr17:37840850:-	PPM1D	16533	chr17:58700882:+	ONLY_REF_SPLICE	YES	761	182	0.03	0.12	0.1324	0.112	PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,PPM1D->Oncogene{Bushman},chr17:58677544-58741849:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1D	HCC2218_BREAST	0.03	0.12	0.2444	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	RAPGEF4--PDK1	15	3	RAPGEF4	1775	chr2:173600776:+	PDK1	53634	chr2:173451006:+	ONLY_REF_SPLICE	YES	0	30	1	0.38	0.1528	0.0306	RAPGEF4->Rap_guanine_nucleotide_exchange_factor_4,chr2:173600002-173917621:+,PDK1->ArcherDX_panel,FoundationOne_panel,chr2:173420101-173489823:+,pyruvate_dehydrogenase_kinase_1	HCC2218_BREAST	0.38	1	0.1834	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	MT-TA--MT-TC	11	16	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.112	0.163	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2218_BREAST	1	1	0.275	FALSE	462	80	0	856	0	FALSE	ACH-000755
HCC2218_BREAST	CTD-2319I12.4--RPS6KB1	13	5	CTD-2319I12.4	3100	chr17:58209797:-	RPS6KB1	15912	chr17:58003796:+	ONLY_REF_SPLICE	YES	2	883	0.9	0.02	0.1324	0.0509	CTD-2319I12.4->chr17:58203896-58213005:-,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	HCC2218_BREAST	0.02	0.9	0.1833	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	MT-ND6--MT-TE	13	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1324	0.0204	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2218_BREAST	1	1	0.1528	FALSE	499	1288	110	792	0	FALSE	ACH-000755
HCC2218_BREAST	INTS2--RPS6KB1	11	9	INTS2	6021	chr17:59996761:-	RPS6KB1	42014	chr17:58011531:+	ONLY_REF_SPLICE	YES	286	848	0.07	0.02	0.112	0.0917	{Klijn_CCL:Breast=1},INTS2->chr17:59942731-60005377:-,integrator_complex_subunit_2,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	HCC2218_BREAST	0.02	0.07	0.2037	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	INTS2--ZNF652	6	27	INTS2	15973	chr17:59967147:-	ZNF652	32455	chr17:47399870:-	ONLY_REF_SPLICE	YES	349	2	0.09	0.94	0.0611	0.275	INTS2->chr17:59942731-60005377:-,integrator_complex_subunit_2,ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652	HCC2218_BREAST	0.09	0.94	0.3361	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	INTS2--VMP1	9	14	INTS2	2665	chr17:60003713:-	VMP1	36626	chr17:57814814:+	ONLY_REF_SPLICE	YES	517	2218	0.04	0.01	0.0917	0.1426	INTS2->chr17:59942731-60005377:-,integrator_complex_subunit_2,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HCC2218_BREAST	0.01	0.04	0.2343	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	NRIP1--AF127936.7	12	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.74	1	0.1222	0.0204	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC2218_BREAST	0.74	1	0.1426	FALSE	292	1546	117	613	0	FALSE	ACH-000755
HCC2218_BREAST	MT-TA--MT-TC	9	12	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0917	0.1222	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2218_BREAST	1	1	0.2139	FALSE	462	80	0	856	0	FALSE	ACH-000755
HCC2218_BREAST	MT-TA--MT-TY	12	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1222	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC2218_BREAST	1	1	0.1222	FALSE	13	214	14	42	0	FALSE	ACH-000755
HCC2218_BREAST	EIF3D--PTMA	11	1	EIF3D	14233	chr22:36907548:-	PTMA	22327	chr2:232576076:+	INCL_NON_REF_SPLICE	NO	236	5240	0.05	0	0.112	0.0102	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2218_BREAST	0	0.05	0.1222	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	CUEDC1--VMP1	11	0	CUEDC1	1099	chr17:56032586:-	VMP1	24520	chr17:57812699:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.112	0	CUEDC1->CUE_domain_containing_1,Oncogene{Bushman},chr17:55938604-56032684:-,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HCC2218_BREAST	1	1	0.112	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	RP11-155G15.2--RP11-1E3.1	11	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.112	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HCC2218_BREAST	1	1	0.112	FALSE	46	201	11	112	0	FALSE	ACH-000755
HCC2218_BREAST	GRB7--MED13	9	6	GRB7	8206	chr17:37902455:+	MED13	44077	chr17:60024378:-	ONLY_REF_SPLICE	YES	665	126	0.02	0.11	0.0917	0.0611	GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7,MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13	HCC2218_BREAST	0.02	0.11	0.1528	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	MT-TA--MT-TC	10	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1019	0.0102	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2218_BREAST	1	1	0.1121	FALSE	462	80	0	856	0	FALSE	ACH-000755
HCC2218_BREAST	MT-ND6--MT-TE	6	16	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.0611	0.163	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2218_BREAST	0.85	1	0.2241	FALSE	499	1288	110	792	0	FALSE	ACH-000755
HCC2218_BREAST	RCC1--ICA1	10	0	RCC1	2175	chr1:28834672:+	ICA1	32692	chr7:8183602:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1019	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ICA1->chr7:8152814-8302317:-,islet_cell_autoantigen_1	HCC2218_BREAST	1	1	0.1019	TRUE	0	6	0	3	2	TRUE	ACH-000755
HCC2218_BREAST	C1orf194--UQCR10	9	3	C1orf194	3284	chr1:109650635:-	UQCR10	8361	chr22:30163372:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0917	0.0306	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.41%,GTEx_FI:{Testis=[count:16=pct:15.2],Pituitary=[count:4=pct:7.7],Lung=[count:4=pct:2.4],Brain=[count:3=pct:0.5],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Fallopian_Tube=[count:1=pct:16.7],Thyroid=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=13;pct=0.15%;dist=Testis=12,Adipose_-_Subcutaneous=1},C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	HCC2218_BREAST	1	1	0.1223	TRUE	26	6	0	14	0	FALSE	ACH-000755
HCC2218_BREAST	MT-ND6--MT-TE	7	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.81	1	0.0713	0.1019	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2218_BREAST	0.81	1	0.1732	FALSE	499	1288	110	792	0	FALSE	ACH-000755
HCC2218_BREAST	EIF3D--PTMA	9	1	EIF3D	14233	chr22:36907548:-	PTMA	22872	chr2:232576621:+	INCL_NON_REF_SPLICE	YES	236	4908	0.04	0	0.0917	0.0102	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2218_BREAST	0	0.04	0.1019	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	EIF3D--PTMA	9	1	EIF3D	14231	chr22:36907550:-	PTMA	22340	chr2:232576089:+	INCL_NON_REF_SPLICE	YES	215	4891	0.04	0	0.0917	0.0102	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2218_BREAST	0	0.04	0.1019	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	EIF3D--PTMA	9	1	EIF3D	14233	chr22:36907548:-	PTMA	22869	chr2:232576618:+	INCL_NON_REF_SPLICE	YES	236	4877	0.04	0	0.0917	0.0102	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2218_BREAST	0	0.04	0.1019	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	RP11-680G10.1--GSE1	8	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	12	1	0.52	0.0815	0.0509	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC2218_BREAST	0.52	1	0.1324	TRUE	458	1351	185	561	0	FALSE	ACH-000755
HCC2218_BREAST	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0917	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2218_BREAST	1	1	0.0917	TRUE	0	0	0	434	0	FALSE	ACH-000755
HCC2218_BREAST	C15orf57--CBX3	6	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	61	29	0.22	0.37	0.0611	0.112	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC2218_BREAST	0.22	0.37	0.1731	TRUE	267	562	48	632	0	FALSE	ACH-000755
HCC2218_BREAST	DENND4B--SLC39A1	7	6	DENND4B	11088	chr1:153909018:-	SLC39A1	22346	chr1:153936179:-	ONLY_REF_SPLICE	YES	140	24	0.08	0.35	0.0713	0.0611	LOCAL_REARRANGEMENT:-:[12403],DENND4B->DENN_domain_containing_4B,chr1:153901977-153919172:-,SLC39A1->chr1:153931575-153940188:-,solute_carrier_family_39_member_1	HCC2218_BREAST	0.08	0.35	0.1324	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	SLC9A3R1--NPM1	7	6	SLC9A3R1	6247	chr17:72764337:+	NPM1	11140	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	8542	2	0	0.87	0.0713	0.0611	SLC9A3R1->Oncogene{Bushman},SLC9A3_regulator_1,chr17:72744791-72765492:+,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HCC2218_BREAST	0	0.87	0.1324	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	EIF3D--PTMA	8	1	EIF3D	14233	chr22:36907548:-	PTMA	22887	chr2:232576636:+	INCL_NON_REF_SPLICE	YES	236	4684	0.04	0	0.0815	0.0102	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2218_BREAST	0	0.04	0.0917	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	EIF3D--PTMA	8	1	EIF3D	14231	chr22:36907550:-	PTMA	22921	chr2:232576670:+	INCL_NON_REF_SPLICE	YES	215	4408	0.04	0	0.0815	0.0102	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2218_BREAST	0	0.04	0.0917	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	MT-ND6--MT-TE	6	7	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0.0713	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2218_BREAST	1	1	0.1324	FALSE	499	1288	110	792	0	FALSE	ACH-000755
HCC2218_BREAST	EIF3D--PTMA	7	1	EIF3D	14231	chr22:36907550:-	PTMA	22891	chr2:232576640:+	INCL_NON_REF_SPLICE	YES	215	4683	0.04	0	0.0713	0.0102	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2218_BREAST	0	0.04	0.0815	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	MT-ND6--MT-TE	3	16	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	5	0	0.79	1	0.0306	0.163	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2218_BREAST	0.79	1	0.1936	FALSE	499	1288	110	792	0	FALSE	ACH-000755
HCC2218_BREAST	EIF3D--PTMA	6	1	EIF3D	14232	chr22:36907549:-	PTMA	22877	chr2:232576626:+	INCL_NON_REF_SPLICE	NO	236	4763	0.03	0	0.0611	0.0102	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2218_BREAST	0	0.03	0.0713	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	MT-ND6--MT-TE	3	13	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	4	0	0.8	1	0.0306	0.1324	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2218_BREAST	0.8	1	0.163	FALSE	499	1288	110	792	0	FALSE	ACH-000755
HCC2218_BREAST	SSH2--RPL12P38	6	1	SSH2	22250	chr17:27975162:-	RPL12P38	37039	chr17:58511848:-	INCL_NON_REF_SPLICE	YES	33	1	0.17	0.88	0.0611	0.0102	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,RPL12P38->chr17:58511039-58513357:-,ribosomal_protein_L12_pseudogene_38	HCC2218_BREAST	0.17	0.88	0.0713	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	PABPC1--RPS28	6	0	PABPC1	2022	chr8:101734016:-	RPS28	18700	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC2218_BREAST	1	1	0.0611	TRUE	0	0	0	6	0	TRUE	ACH-000755
HCC2218_BREAST	RCC1--GNAS	6	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0611	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HCC2218_BREAST	1	1	0.0611	TRUE	0	3	0	13	2	TRUE	ACH-000755
HCC2218_BREAST	PHB--EEF2	4	7	PHB	5239	chr17:47486804:-	EEF2	12800	chr19:3985461:-	INCL_NON_REF_SPLICE	YES	11268	0	0	1	0.0407	0.0713	PHB->Oncogene{Bushman},chr17:47481414-47492246:-,prohibitin,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	HCC2218_BREAST	0	1	0.112	TRUE	0	0	0	2	0	FALSE	ACH-000755
HCC2218_BREAST	SLC9A3R1--NPM1	4	7	SLC9A3R1	6256	chr17:72764346:+	NPM1	11149	chr5:170814866:+	INCL_NON_REF_SPLICE	YES	8192	4	0	0.73	0.0407	0.0713	SLC9A3R1->Oncogene{Bushman},SLC9A3_regulator_1,chr17:72744791-72765492:+,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HCC2218_BREAST	0	0.73	0.112	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	EIF3D--PTMA	5	1	EIF3D	14236	chr22:36907545:-	PTMA	22333	chr2:232576082:+	INCL_NON_REF_SPLICE	NO	236	5018	0.02	0	0.0509	0.0102	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2218_BREAST	0	0.02	0.0611	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	PHB--EEF2	3	9	PHB	5251	chr17:47486792:-	EEF2	12813	chr19:3985448:-	INCL_NON_REF_SPLICE	YES	12007	0	0	1	0.0306	0.0917	PHB->Oncogene{Bushman},chr17:47481414-47492246:-,prohibitin,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	HCC2218_BREAST	0	1	0.1223	TRUE	0	0	0	2	0	FALSE	ACH-000755
HCC2218_BREAST	CASP8--STRADB	5	0	CASP8	1670	chr2:202098835:+	STRADB	33270	chr2:202340342:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0509	0	CASP8->Oncogene{Bushman},caspase_8,chr2:202098166-202152434:+,STRADB->STE20-related_kinase_adaptor_beta,chr2:202252581-202345569:+	HCC2218_BREAST	1	1	0.0509	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	HID1--RPS12	3	8	HID1	11110	chr17:72951962:-	RPS12	19371	chr6:133135716:+	INCL_NON_REF_SPLICE	YES	1591	1	0.01	0.92	0.0306	0.0815	HID1->HID1_domain_containing,chr17:72946838-72969261:-,RPS12->chr6:133135580-133138703:+,ribosomal_protein_S12	HCC2218_BREAST	0.01	0.92	0.1121	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	HID1--RPS12	3	8	HID1	11103	chr17:72951969:-	RPS12	19363	chr6:133135708:+	INCL_NON_REF_SPLICE	YES	1593	1	0.01	0.92	0.0306	0.0815	HID1->HID1_domain_containing,chr17:72946838-72969261:-,RPS12->chr6:133135580-133138703:+,ribosomal_protein_S12	HCC2218_BREAST	0.01	0.92	0.1121	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	MT-TA--MT-TC	3	8	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0.0815	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2218_BREAST	1	1	0.1121	FALSE	462	80	0	856	0	FALSE	ACH-000755
HCC2218_BREAST	MT-TA--MT-TY	5	0	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC2218_BREAST	1	1	0.0509	FALSE	13	214	14	42	0	FALSE	ACH-000755
HCC2218_BREAST	RP11-680G10.1--GSE1	4	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	68	1	0.11	0.0407	0.0407	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC2218_BREAST	0.11	1	0.0814	TRUE	465	1949	224	605	0	FALSE	ACH-000755
HCC2218_BREAST	USP32--NLK	2	12	USP32	4918	chr17:58422842:-	NLK	58412	chr17:26512205:+	ONLY_REF_SPLICE	YES	385	62	0.04	0.18	0.0204	0.1222	{Klijn_CCL:Breast=1},USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,NLK->chr17:26368763-26523407:+,nemo_like_kinase	HCC2218_BREAST	0.04	0.18	0.1426	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	EIF3D--PTMA	4	1	EIF3D	14231	chr22:36907550:-	PTMA	23413	chr2:232577162:+	ONLY_REF_SPLICE	YES	215	4440	0.02	0	0.0407	0.0102	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2218_BREAST	0	0.02	0.0509	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	EIF3D--PTMA	4	1	EIF3D	14233	chr22:36907548:-	PTMA	22875	chr2:232576624:+	INCL_NON_REF_SPLICE	YES	236	4710	0.02	0	0.0407	0.0102	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2218_BREAST	0	0.02	0.0509	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	EIF1--RPL5	4	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	HCC2218_BREAST	1	1	0.0407	TRUE	0	0	0	39	0	FALSE	ACH-000755
HCC2218_BREAST	MT-TA--MT-TY	4	0	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC2218_BREAST	1	1	0.0407	FALSE	13	214	14	42	0	FALSE	ACH-000755
HCC2218_BREAST	MT-TA--MT-TY	4	0	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC2218_BREAST	1	1	0.0407	FALSE	13	214	14	42	0	FALSE	ACH-000755
HCC2218_BREAST	RP11-1E3.1--RP11-455B3.1	3	3	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0.0306	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	HCC2218_BREAST	1	1	0.0612	TRUE	13	49	2	38	0	FALSE	ACH-000755
HCC2218_BREAST	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.22	1	0.0306	0.0204	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC2218_BREAST	0.22	1	0.051	FALSE	125	705	46	456	0	FALSE	ACH-000755
HCC2218_BREAST	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0306	0.0204	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC2218_BREAST	0.83	1	0.051	FALSE	515	4851	409	746	0	FALSE	ACH-000755
HCC2218_BREAST	EIF3D--PTMA	3	1	EIF3D	14233	chr22:36907548:-	PTMA	22917	chr2:232576666:+	INCL_NON_REF_SPLICE	YES	236	4389	0.02	0	0.0306	0.0102	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2218_BREAST	0	0.02	0.0408	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	FTH1--ACTG1	3	1	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	2464	0	0	1	0.0306	0.0102	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HCC2218_BREAST	0	1	0.0408	FALSE	0	0	0	64	0	FALSE	ACH-000755
HCC2218_BREAST	FTH1--ACTG1	3	1	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	2485	0	0	1	0.0306	0.0102	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HCC2218_BREAST	0	1	0.0408	FALSE	0	0	0	64	0	FALSE	ACH-000755
HCC2218_BREAST	BCAS3--PRAC2	3	0	BCAS3	28940	chr17:59093262:+	PRAC2	60689	chr17:46801690:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,PRAC2->chr17:46800530-46802819:+,prostate_cancer_susceptibility_candidate_2	HCC2218_BREAST	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	EEF2--HNRNPA1	3	0	EEF2	3353	chr19:3983115:-	HNRNPA1	15866	chr12:54676584:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,HNRNPA1->chr12:54673977-54680872:+,heterogeneous_nuclear_ribonucleoprotein_A1	HCC2218_BREAST	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2218_BREAST	1	1	0.0306	FALSE	499	1288	110	792	0	FALSE	ACH-000755
HCC2218_BREAST	MT-TA--MT-TY	3	0	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC2218_BREAST	1	1	0.0306	FALSE	13	214	14	42	0	FALSE	ACH-000755
HCC2218_BREAST	CTD-2319I12.4--RPS6KB1	2	3	CTD-2319I12.4	1889	chr17:58212117:-	RPS6KB1	15912	chr17:58003796:+	ONLY_REF_SPLICE	YES	6	883	0.45	0.01	0.0204	0.0306	CTD-2319I12.4->chr17:58203896-58213005:-,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	HCC2218_BREAST	0.01	0.45	0.051	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	POLDIP2--BRIP1	1	7	POLDIP2	2314	chr17:26682821:-	BRIP1	35914	chr17:59770873:-	ONLY_REF_SPLICE	YES	538	284	0.01	0.03	0.0102	0.0713	POLDIP2->chr17:26673659-26684545:-,polymerase_(DNA)_delta_interacting_protein_2,BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-	HCC2218_BREAST	0.01	0.03	0.0815	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0204	0.0204	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC2218_BREAST	0.8	1	0.0408	FALSE	467	2173	244	435	0	FALSE	ACH-000755
HCC2218_BREAST	CTD-2319I12.4--RPS6KB1	1	5	CTD-2319I12.4	4235	chr17:58206317:-	RPS6KB1	15912	chr17:58003796:+	ONLY_REF_SPLICE	YES	0	883	1	0.01	0.0102	0.0509	CTD-2319I12.4->chr17:58203896-58213005:-,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	HCC2218_BREAST	0.01	1	0.0611	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	5	6	0.38	0.33	0.0204	0.0102	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC2218_BREAST	0.33	0.38	0.0306	FALSE	25	145	6	90	0	FALSE	ACH-000755
HCC2218_BREAST	ARMC7--KCTD2	2	0	ARMC7	1655	chr17:73106701:+	KCTD2	16808	chr17:73049109:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_REARRANGEMENT:+:[44063],ARMC7->armadillo_repeat_containing_7,chr17:73106047-73126360:+,KCTD2->Oncogene{Bushman},chr17:73028670-73061984:+,potassium_channel_tetramerization_domain_containing_2	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	CASP8--STRADB	2	0	CASP8	6501	chr2:202122877:+	STRADB	33270	chr2:202340342:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CASP8->Oncogene{Bushman},caspase_8,chr2:202098166-202152434:+,STRADB->STE20-related_kinase_adaptor_beta,chr2:202252581-202345569:+	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	CTD-2319I12.4--RPS6KB1	1	4	CTD-2319I12.4	3100	chr17:58209797:-	RPS6KB1	17060	chr17:58007478:+	ONLY_REF_SPLICE	NO	2	922	0.71	0.01	0.0102	0.0407	CTD-2319I12.4->chr17:58203896-58213005:-,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	HCC2218_BREAST	0.01	0.71	0.0509	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	CTNND1--GNAS	2	0	CTNND1	2585	chr11:57529518:+	GNAS	46198	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	30054	chr13:114201615:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	HCC2218_BREAST	1	1	0.0204	TRUE	0	3	0	3	3	TRUE	ACH-000755
HCC2218_BREAST	DOCK5--PPP2R2A	2	0	DOCK5	1229	chr8:25042466:+	PPP2R2A	77660	chr8:26211984:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5,PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	FOXO1--LINC00598	2	0	FOXO1	2015	chr13:41239720:-	LINC00598	16798	chr13:41034543:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NEIGHBORS[74661],FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,LINC00598->chr13:41025131-41055143:-,long_intergenic_non-protein_coding_RNA_598	HCC2218_BREAST	1	1	0.0204	FALSE	8	15	1	11	0	FALSE	ACH-000755
HCC2218_BREAST	GRB7--PGAP3	1	4	GRB7	6211	chr17:37900460:+	PGAP3	14862	chr17:37842272:-	ONLY_REF_SPLICE	YES	789	424	0.01	0.01	0.0102	0.0407	LOCAL_INVERSION:+:-:[41130],GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7,PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3	HCC2218_BREAST	0.01	0.01	0.0509	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	INVS--ZNF782	2	0	INVS	17677	chr9:103015418:+	ZNF782	37882	chr9:99589463:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	INVS->chr9:102861538-103063282:+,inversin,ZNF782->chr9:99578754-99637905:-,zinc_finger_protein_782	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	MAGI1--CDC42BPA	2	0	MAGI1	1839	chr3:66023671:-	CDC42BPA	53133	chr1:227400920:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MAGI1->chr3:65339200-66024509:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_1,CDC42BPA->CDC42_binding_protein_kinase_alpha,chr1:227177566-227506175:-	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	MAPK9--CANX	2	0	MAPK9	2345	chr5:179713975:-	CANX	32663	chr5:179132680:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},MAPK9->Oncogene{Bushman},chr5:179660143-179719099:-,mitogen-activated_protein_kinase_9,CANX->calnexin,chr5:179105629-179157926:+	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	MPV17--POMT1	2	0	MPV17	3903	chr2:27545315:-	POMT1	16502	chr9:134381501:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MPV17->MPV17,_mitochondrial_inner_membrane_protein,chr2:27532360-27548547:-,POMT1->chr9:134378289-134399193:+,protein_O-mannosyltransferase_1	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	NFIB--ZDHHC21	2	0	NFIB	6984	chr9:14306988:-	ZDHHC21	39981	chr9:14640010:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B,ZDHHC21->chr9:14611069-14693469:-,zinc_finger_DHHC-type_containing_21	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	RP11-435O5.2--ERCC6L2	2	0	RP11-435O5.2	1073	chr9:98189006:-	ERCC6L2	30227	chr9:98740343:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	RP11-435O5.2->chr9:98177116-98189078:-,ERCC6L2->chr9:98637983-98776842:+,excision_repair_cross-complementation_group_6_like_2	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	RPL30--LAPTM4B	2	0	RPL30	2123	chr8:99057575:-	LAPTM4B	12692	chr8:98817581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	HCC2218_BREAST	1	1	0.0204	TRUE	1	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	SS18L1--AKT2	2	0	SS18L1	1124	chr20:60718945:+	AKT2	29554	chr19:40771258:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	HCC2218_BREAST	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	GRB7--PGAP3	1	3	GRB7	6667	chr17:37900916:+	PGAP3	16116	chr17:37841002:-	ONLY_REF_SPLICE	NO	789	413	0.01	0.01	0.0102	0.0306	LOCAL_INVERSION:+:-:[41130],GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7,PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3	HCC2218_BREAST	0.01	0.01	0.0408	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	TIMM23B--LINC00843	1	3	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0102	0.0306	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC2218_BREAST	1	1	0.0408	TRUE	62	24	1	171	0	FALSE	ACH-000755
HCC2218_BREAST	DENND4B--SLC39A1	1	2	DENND4B	10142	chr1:153909964:-	SLC39A1	22346	chr1:153936179:-	ONLY_REF_SPLICE	YES	209	24	0.01	0.11	0.0102	0.0204	LOCAL_REARRANGEMENT:-:[12403],DENND4B->DENN_domain_containing_4B,chr1:153901977-153919172:-,SLC39A1->chr1:153931575-153940188:-,solute_carrier_family_39_member_1	HCC2218_BREAST	0.01	0.11	0.0306	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	SDK2--CTB-91J4.1	1	2	SDK2	1065	chr17:71640164:-	CTB-91J4.1	55299	chr17:34474961:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0102	0.0204	SDK2->chr17:71330523-71640228:-,sidekick_cell_adhesion_molecule_2,CTB-91J4.1->chr17:34443570-34504870:+	HCC2218_BREAST	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000755
HCC2218_BREAST	ADSS--SDCCAG8	1	1	ADSS	1500	chr1:244614937:-	SDCCAG8	37369	chr1:243542023:+	ONLY_REF_SPLICE	YES	626	34	0	0.06	0.0102	0.0102	ADSS->adenylosuccinate_synthase,chr1:244571796-244615436:-,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	HCC2218_BREAST	0	0.06	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	CMAHP--ACOT13	1	1	CMAHP	1276	chr6:25166518:-	ACOT13	24341	chr6:24698111:+	ONLY_REF_SPLICE	NO	124	306	0.02	0.01	0.0102	0.0102	CMAHP->chr6:25081548-25166793:-,cytidine_monophospho-N-acetylneuraminic_acid_hydroxylase,_pseudogene,ACOT13->acyl-CoA_thioesterase_13,chr6:24667263-24705293:+	HCC2218_BREAST	0.01	0.02	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	DPCD--FBXW4	1	1	DPCD	8800	chr10:103361093:+	FBXW4	24682	chr10:103372234:-	ONLY_REF_SPLICE	NO	117	83	0.02	0.02	0.0102	0.0102	LOCAL_INVERSION:+:-:[998],DPCD->chr10:103330317-103369425:+,deleted_in_primary_ciliary_dyskinesia_homolog_(mouse),FBXW4->F-box_and_WD_repeat_domain_containing_4,Oncogene{Bushman},chr10:103370423-103455052:-	HCC2218_BREAST	0.02	0.02	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	EIF3D--PTMA	1	1	EIF3D	14231	chr22:36907550:-	PTMA	23404	chr2:232577153:+	ONLY_REF_SPLICE	NO	215	4870	0.01	0	0.0102	0.0102	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2218_BREAST	0	0.01	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	FSIP1--RP11-624L4.1	1	1	FSIP1	15137	chr15:39893046:-	RP11-624L4.1	27601	chr15:39363809:-	ONLY_REF_SPLICE	YES	30	0	0.06	1	0.0102	0.0102	GTEx_FI:{Breast=[count:2=pct:1.8],Brain=[count:1=pct:0.2]},FSIP1->chr15:39892232-40075031:-,fibrous_sheath_interacting_protein_1,RP11-624L4.1->chr15:39157523-39719396:-	HCC2218_BREAST	0.06	1	0.0204	TRUE	3	181	3	5	0	FALSE	ACH-000755
HCC2218_BREAST	LIMCH1--GNAS	1	1	LIMCH1	6783	chr4:41496623:+	GNAS	68296	chr20:57470667:+	ONLY_REF_SPLICE	YES	806	997	0	0	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HCC2218_BREAST	0	0	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	PSMG1--METTL14	1	1	PSMG1	4047	chr21:40552211:-	METTL14	14023	chr4:119609078:+	ONLY_REF_SPLICE	YES	182	81	0.01	0.02	0.0102	0.0102	PSMG1->chr21:40546695-40555777:-,proteasome_assembly_chaperone_1,METTL14->chr4:119606523-119636588:+,methyltransferase_like_14	HCC2218_BREAST	0.01	0.02	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	RPS6KB1--VMP1	1	1	RPS6KB1	1240	chr17:57970686:+	VMP1	28174	chr17:57808782:+	ONLY_REF_SPLICE	YES	879	182	0	0.01	0.0102	0.0102	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HCC2218_BREAST	0	0.01	0.0204	FALSE	0	1	0	3	1	FALSE	ACH-000755
HCC2218_BREAST	RPS6KB1--VMP1	1	1	RPS6KB1	7326	chr17:57992064:+	VMP1	34053	chr17:57851115:+	ONLY_REF_SPLICE	YES	913	1267	0	0	0.0102	0.0102	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HCC2218_BREAST	0	0	0.0204	FALSE	0	0	0	2	0	FALSE	ACH-000755
HCC2218_BREAST	ST3GAL1--TRAPPC9	1	1	ST3GAL1	1248	chr8:134583936:-	TRAPPC9	33252	chr8:141415797:-	ONLY_REF_SPLICE	NO	725	95	0	0.02	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	HCC2218_BREAST	0	0.02	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000755
HCC2218_BREAST	USP11--EEF1D	1	1	USP11	1530	chrX:47092618:+	EEF1D	26020	chr8:144669022:-	ONLY_REF_SPLICE	NO	33	556	0.06	0	0.0102	0.0102	USP11->chrX:47092089-47107727:+,ubiquitin_specific_peptidase_11,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HCC2218_BREAST	0	0.06	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000755
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	307	124	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.6857	0.6809	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.3666	TRUE	477	1352	189	275	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	192	38	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	1.0543	0.2087	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.263	TRUE	508	994	45	981	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	153	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8401	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8401	TRUE	0	0	0	518	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-574K11.29	125	8	TIMM23	6952	chr10:51606988:-	RP11-574K11.29	13578	chr10:75473090:-	INCL_NON_REF_SPLICE	YES	272	7	0.33	0.95	0.6864	0.0439	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-574K11.29->chr10:75463493-75473339:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.95	0.7303	TRUE	1	1	0	6	1	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBL1--PPP4R1L	66	28	RBL1	12024	chr20:35675456:-	PPP4R1L	30379	chr20:56861502:-	ONLY_REF_SPLICE	YES	149	0	0.39	1	0.3624	0.1537	RBL1->Oncogene{Bushman},chr20:35624752-35724398:-,chr20:35724188-35725581:+,retinoblastoma-like_1,PPP4R1L->chr20:56806188-56884495:-,protein_phosphatase_4_regulatory_subunit_1_like_(pseudogene)	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.5161	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	62	3	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	83	6267	0.44	0.01	0.3404	0.0165	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.44	0.3569	TRUE	0	0	0	434	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	61	6	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19306	22	0	0.75	0.3349	0.0329	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.75	0.3678	FALSE	231	205	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	11	205	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	1669	0	0.11	1	0.0604	1.1256	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	1.186	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	228	MT-ND4	2290	chrM:12049:+	MT-ND4L	5392	chrM:10483:+	INCL_NON_REF_SPLICE	YES	16	0	0.94	1	0.022	1.2519	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	1.2739	FALSE	268	700	35	287	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	59	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	16403	14	0	0.81	0.324	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.81	0.335	FALSE	230	193	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	56	13	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3075	0.0714	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3789	FALSE	462	80	0	856	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OR51S1--TP53I11	59	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.324	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.324	TRUE	402	216	10	229	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	25	133	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1373	0.7303	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8676	TRUE	160	277	29	98	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	217	MT-ND4	1852	chrM:11611:+	MT-ND4L	5385	chrM:10476:+	INCL_NON_REF_SPLICE	YES	15673	0	0.01	1	0.0165	1.1915	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	1.208	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	48	37	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	9	0	0.9	1	0.2636	0.2032	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.4668	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	49	29	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	23133	1793	0	0.04	0.2691	0.1592	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.4283	FALSE	231	205	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	211	MT-ND4	1984	chrM:11743:+	MT-ND4L	5475	chrM:10566:+	INCL_NON_REF_SPLICE	YES	19023	0	0.01	1	0.0165	1.1586	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	1.1751	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	207	MT-ND4	1851	chrM:11610:+	MT-ND4L	5498	chrM:10589:+	INCL_NON_REF_SPLICE	YES	15650	1	0.01	1	0.0165	1.1366	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	1.1531	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	189	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	132	0	0.6	1	0.0384	1.0378	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	1.0762	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	205	MT-ND4	1489	chrM:11248:+	MT-ND4L	5385	chrM:10476:+	INCL_NON_REF_SPLICE	YES	1644	0	0.11	1	0.0165	1.1256	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	1.1421	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	189	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	127	0	0.61	1	0.0384	1.0378	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	1	1.0762	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	201	MT-ND4	1754	chrM:11513:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	NO	9301	1	0.02	1	0.0165	1.1037	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	1.1202	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	198	MT-ND4	1501	chrM:11260:+	MT-ND4L	5523	chrM:10614:+	INCL_NON_REF_SPLICE	YES	1800	1	0.1	1	0.0165	1.0872	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	1.1037	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	198	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	1835	1	0.1	1	0.0165	1.0872	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	1.1037	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	198	MT-ND4	1542	chrM:11301:+	MT-ND4L	5538	chrM:10629:+	INCL_NON_REF_SPLICE	YES	2640	1	0.07	1	0.0165	1.0872	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	1.1037	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	189	MT-ND4	1197	chrM:10956:+	MT-ND4L	5432	chrM:10523:+	INCL_NON_REF_SPLICE	YES	102	0	0.65	1	0.022	1.0378	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	1.0598	FALSE	344	826	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	189	MT-ND4	1213	chrM:10972:+	MT-ND4L	5376	chrM:10467:+	INCL_NON_REF_SPLICE	YES	125	0	0.61	1	0.0165	1.0378	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	1	1.0543	FALSE	344	826	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	181	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	58	0	0.76	1	0.022	0.9939	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	1.0159	FALSE	344	826	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-58C22.1--CTD-2336H13.2	49	0	RP11-58C22.1	2618	chr16:76669520:+	CTD-2336H13.2	5594	chr16:76770214:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2691	0	GTEx_FI:{Testis=[count:22=pct:21.0]},RP11-58C22.1->chr16:76587314-76669520:+,CTD-2336H13.2->chr16:76770239-76962066:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2691	TRUE	5	3	0	6	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	174	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	54	1	0.77	0.99	0.022	0.9554	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.99	0.9774	FALSE	344	826	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	28	78	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1537	0.4283	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.582	TRUE	274	363	69	150	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	29	73	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21336	140	0	0.42	0.1592	0.4008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.42	0.56	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	33	54	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	24024	0	0	1	0.1812	0.2965	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.4777	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	11	126	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	11001	0	0.01	1	0.0604	0.6919	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.7523	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--ZSWIM6	40	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2196	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2196	TRUE	47	32	1	28	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	22	71	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22914	22	0	0.81	0.1208	0.3899	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.81	0.5107	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	16	95	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	22851	0	0	1	0.0879	0.5216	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.6095	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	12	110	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	20529	0	0.01	1	0.0659	0.604	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.6699	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	142	MT-ND4	1789	chrM:11548:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	11171	0	0.01	1	0.022	0.7797	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.8017	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	35	17	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3620	22	0.01	0.7	0.1922	0.0933	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.7	0.2855	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	10	116	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	5747	0	0.02	1	0.0549	0.6369	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.6918	FALSE	222	212	16	282	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	16	92	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	22285	0	0	1	0.0879	0.5052	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.5931	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	13	101	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	19319	0	0.01	1	0.0714	0.5546	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.626	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	24	56	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	26271	928	0	0.08	0.1318	0.3075	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.4393	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	8	120	MT-ND4	2324	chrM:12083:+	MT-ATP8	5419	chrM:8406:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0.6589	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7028	FALSE	209	205	15	279	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	9	113	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	11	1	0.92	0.99	0.0494	0.6205	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	0.99	0.6699	FALSE	344	821	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	22	59	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	24033	0	0	1	0.1208	0.324	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.4448	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	3	135	RP11-444D3.1	9606	chr12:24366277:-	SOX5	13900	chr12:24102595:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0165	0.7413	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7578	TRUE	8	10	1	12	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	131	MT-ND4	1475	chrM:11234:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	1415	0	0.09	1	0.0165	0.7193	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.7358	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	34	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16558	22	0	0.62	0.1867	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.62	0.1977	FALSE	230	198	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	121	MT-ND4	1466	chrM:11225:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	1352	0	0.08	1	0.022	0.6644	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.6864	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	125	MT-ND4	1301	chrM:11060:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	299	0	0.3	1	0.0165	0.6864	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.7029	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	112	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	34	0	0.78	1	0.0329	0.615	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.6479	FALSE	213	207	15	279	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	123	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	275	0	0.31	1	0.0165	0.6754	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	1	0.6919	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	11	90	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	22471	0	0	1	0.0604	0.4942	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.5546	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	112	MT-ND4	2320	chrM:12079:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0275	0.615	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	0.6425	FALSE	209	205	15	279	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	112	MT-ND4	2343	chrM:12102:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0.615	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6425	FALSE	209	205	15	279	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	22	42	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	24340	2	0	0.97	0.1208	0.2306	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.97	0.3514	FALSE	231	216	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	101	MT-ND4	1852	chrM:11611:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	21739	0	0	1	0.0384	0.5546	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.593	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	100	MT-ND4	1875	chrM:11634:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	22271	0	0	1	0.0384	0.5491	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.5875	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	11	79	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18007	140	0	0.39	0.0604	0.4338	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.39	0.4942	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	101	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	19215	0	0.01	1	0.022	0.5546	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.5766	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	99	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	22281	0	0	1	0.022	0.5436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.5656	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	95	MT-ND4	1776	chrM:11535:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	22841	0	0	1	0.0275	0.5216	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.5491	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	8	82	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	22129	0	0	1	0.0439	0.4503	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.4942	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	13	62	MT-ND4	1531	chrM:11290:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	26787	22	0	0.77	0.0714	0.3404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.77	0.4118	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	86	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	22481	0	0	1	0.0384	0.4722	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.5106	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	16	49	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	2197	0	0.03	1	0.0879	0.2691	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.357	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	14	54	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	24044	0	0	1	0.0769	0.2965	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3734	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	85	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2830	140	0.03	0.39	0.0329	0.4667	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.39	0.4996	FALSE	216	209	16	281	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	95	MT-ND4	1774	chrM:11533:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	22923	0	0	1	0.0165	0.5216	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.5381	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	86	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1	22	0.99	0.81	0.0275	0.4722	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.99	0.4997	FALSE	209	205	15	279	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	89	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	22435	0	0	1	0.022	0.4887	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.5107	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	93	MT-ND4	1828	chrM:11587:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	21336	0	0	1	0.0165	0.5107	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.5272	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	81	MT-ND4	1564	chrM:11323:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	25884	0	0	1	0.0329	0.4448	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.4777	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	20	24	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	150	34	0.23	0.56	0.1098	0.1318	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.56	0.2416	TRUE	267	562	48	632	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	26	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1428	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1428	TRUE	46	1352	75	139	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	91	MT-ND4	2195	chrM:11954:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	7298	0	0.01	1	0.0165	0.4997	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.5162	FALSE	231	215	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	9	67	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	20890	992	0	0.07	0.0494	0.3679	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.4173	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	11	59	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	24746	0	0	1	0.0604	0.324	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3844	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	91	MT-ND4	1649	chrM:11408:+	MT-ATP8	5399	chrM:8386:+	INCL_NON_REF_SPLICE	YES	24368	0	0	1	0.0165	0.4997	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.5162	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	90	MT-ND4	1581	chrM:11340:+	MT-ATP8	5391	chrM:8378:+	INCL_NON_REF_SPLICE	YES	24335	0	0	1	0.0165	0.4942	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.5107	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	25	1	MT-CO2	1320	chrM:7905:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	23164	4370	0	0.01	0.1373	0.0055	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1428	FALSE	105	46	5	21	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	15	41	MT-ND4	1311	chrM:11070:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	23072	0	0	1	0.0824	0.2251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3075	FALSE	231	205	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	88	MT-ND4	1545	chrM:11304:+	MT-ATP8	5380	chrM:8367:+	INCL_NON_REF_SPLICE	YES	26353	0	0	1	0.0165	0.4832	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.4997	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	76	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	18007	313	0	0.21	0.0329	0.4173	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.21	0.4502	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	24	4	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	83	5717	0.25	0	0.1318	0.022	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.25	0.1538	TRUE	0	0	0	434	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	78	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	22709	0	0	1	0.0275	0.4283	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.4558	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	83	MT-ND4	1231	chrM:10990:+	MT-ND4L	5632	chrM:10723:+	INCL_NON_REF_SPLICE	YES	147	0	0.37	1	0.0165	0.4557	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	1	0.4722	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	82	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5303	140	0.02	0.38	0.0165	0.4503	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.38	0.4668	FALSE	218	210	16	281	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	13	42	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0714	0.2306	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.302	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	9	57	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	24024	0	0	1	0.0494	0.313	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3624	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	17	25	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	21463	0	0	1	0.0933	0.1373	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2306	FALSE	231	205	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	80	MT-ND4	1998	chrM:11757:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18899	22	0	0.79	0.0165	0.4393	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.79	0.4558	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-290D2.6--RPL35	23	0	RP11-290D2.6	2129	chr13:45915302:+	RPL35	5181	chr9:127624225:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1263	0	RP11-290D2.6->chr13:45914174-45915318:+,RPL35->chr9:127620159-127624260:-,ribosomal_protein_L35	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1263	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	70	MT-ND4	1756	chrM:11515:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22380	22	0	0.77	0.0275	0.3844	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.77	0.4119	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	78	MT-ND4	2288	chrM:12047:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	YES	21	395	0.79	0.17	0.0165	0.4283	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.79	0.4448	FALSE	213	207	15	279	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	77	MT-ND4	1759	chrM:11518:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	22566	0	0	1	0.0165	0.4228	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.4393	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	13	36	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	25527	677	0	0.07	0.0714	0.1977	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.2691	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	8	55	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	24758	0	0	1	0.0439	0.302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3459	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	59	MT-ND4	1517	chrM:11276:+	MT-ATP8	5468	chrM:8455:+	INCL_NON_REF_SPLICE	YES	25857	0	0	1	0.0384	0.324	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3624	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	66	MT-ND4	1531	chrM:11290:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	26787	8	0	0.9	0.0275	0.3624	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.9	0.3899	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	57	MT-ND4	1503	chrM:11262:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	24471	0	0	1	0.0384	0.313	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3514	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	20	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1098	0.0275	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1373	FALSE	416	2512	207	587	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	60	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	26610	313	0	0.17	0.0329	0.3295	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.17	0.3624	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	70	MT-ND4	1783	chrM:11542:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22916	140	0	0.34	0.0165	0.3844	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.34	0.4009	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	61	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	26593	140	0	0.32	0.0275	0.3349	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.32	0.3624	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	69	MT-ND4	1754	chrM:11513:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	22481	188	0	0.28	0.0165	0.3789	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.28	0.3954	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	20	0	MT-CO2	1240	chrM:7825:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1098	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1098	FALSE	105	46	5	21	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	59	MT-ND4	1651	chrM:11410:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	24365	730	0	0.08	0.0275	0.324	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.3515	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	62	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	YES	22914	1056	0	0.06	0.022	0.3404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.3624	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	19	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1043	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1043	TRUE	0	0	0	81	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	12	28	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	21704	0	0	1	0.0659	0.1537	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2196	FALSE	231	205	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	64	MT-ND4	2282	chrM:12041:+	MT-ATP8	5515	chrM:8502:+	INCL_NON_REF_SPLICE	YES	34	1832	0.66	0.04	0.0165	0.3514	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.66	0.3679	FALSE	213	207	15	279	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	64	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	25889	140	0	0.32	0.0165	0.3514	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.32	0.3679	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	58	MT-ND4	1453	chrM:11212:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	24488	0	0	1	0.022	0.3185	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3405	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	50	MT-ND4	1521	chrM:11280:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	26289	730	0	0.07	0.0329	0.2745	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.3074	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	58	MT-ND4	1494	chrM:11253:+	MT-ATP8	5431	chrM:8418:+	INCL_NON_REF_SPLICE	YES	23979	0	0	1	0.022	0.3185	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3405	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	10	34	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	10823	0	0	1	0.0549	0.1867	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2416	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	8	42	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0.2306	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2745	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	51	MT-ND4	1515	chrM:11274:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	25790	140	0	0.29	0.0275	0.28	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.29	0.3075	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	58	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	24837	0	0	1	0.0165	0.3185	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.335	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	58	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	22385	1793	0	0.03	0.0165	0.3185	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.335	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRDM1--HBS1L	16	6	PRDM1	3130	chr6:106536324:+	HBS1L	18282	chr6:135371785:-	ONLY_REF_SPLICE	YES	0	141	1	0.13	0.0879	0.0329	PRDM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},PR_domain_1,chr6:106534195-106557814:+,HBS1L->HBS1_like_translational_GTPase,chr6:135281516-135424194:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	17	2	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0933	0.011	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1043	FALSE	46	201	11	112	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	13	17	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	145	35	0.17	0.46	0.0714	0.0933	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.46	0.1647	TRUE	267	562	48	632	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	53	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	24658	0	0	1	0.022	0.291	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.313	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	9	33	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1495	0	0.03	1	0.0494	0.1812	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.2306	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	49	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	14244	0	0	1	0.0275	0.2691	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2966	FALSE	328	800	43	304	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	16	4	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	10579	1	0	0.95	0.0879	0.022	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.95	0.1099	TRUE	0	0	0	100	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	51	MT-ND4	1510	chrM:11269:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	25243	22	0	0.71	0.022	0.28	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.71	0.302	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	8	35	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	21336	2156	0	0.02	0.0439	0.1922	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.2361	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	47	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0.2581	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2856	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	54	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	24158	0	0	1	0.0165	0.2965	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.313	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	10	25	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21577	140	0	0.2	0.0549	0.1373	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.2	0.1922	FALSE	231	205	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	41	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	24746	140	0	0.25	0.0329	0.2251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.25	0.258	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	6	41	MT-ND5	2730	chrM:14066:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	9	0	0.84	1	0.0329	0.2251	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	1	0.258	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	15	4	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	NO	83	5811	0.19	0	0.0824	0.022	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.19	0.1044	FALSE	0	0	0	434	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	47	MT-ND5	2792	chrM:14128:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.022	0.2581	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2801	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	10	21	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	6626	0	0	1	0.0549	0.1153	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1702	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	44	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	24811	14	0	0.77	0.022	0.2416	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.77	0.2636	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	43	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.022	0.2361	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.2581	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	46	MT-ND5	2795	chrM:14131:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0165	0.2526	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2691	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--B2M	13	3	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	9729	0	0	1	0.0714	0.0165	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0879	FALSE	0	0	0	28	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	33	MT-ND5	2675	chrM:14011:+	MT-ATP8	5892	chrM:8445:+	INCL_NON_REF_SPLICE	YES	1173	0	0.03	1	0.0275	0.1812	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.2087	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0714	0.0055	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0769	FALSE	499	1288	110	792	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	40	MT-ND5	2642	chrM:13978:+	MT-ATP8	5814	chrM:8367:+	INCL_NON_REF_SPLICE	YES	2150	0	0.02	1	0.0165	0.2196	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.2361	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	2	44	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	46	0	0.5	1	0.011	0.2416	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.2526	TRUE	16	11	2	20	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	35	MT-ND4	1572	chrM:11331:+	MT-ATP8	5534	chrM:8521:+	INCL_NON_REF_SPLICE	YES	25123	2174	0	0.02	0.022	0.1922	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.2142	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	39	MT-ND4	1565	chrM:11324:+	MT-ATP8	5527	chrM:8514:+	INCL_NON_REF_SPLICE	YES	25785	2111	0	0.02	0.0165	0.2141	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.2306	FALSE	231	217	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	15	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0494	0.0824	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1318	FALSE	462	80	0	856	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	34	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2474	0	0.02	1	0.022	0.1867	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.2087	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	9	13	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6819	140	0	0.14	0.0494	0.0714	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.14	0.1208	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	11	4	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	83	5746	0.15	0	0.0604	0.022	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.15	0.0824	FALSE	0	0	0	434	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	6	23	MT-ND5	2290	chrM:13626:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2573	0	0.01	1	0.0329	0.1263	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1592	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	11	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16403	22	0	0.37	0.0604	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.37	0.0714	FALSE	230	193	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	6	22	MT-ND5	2662	chrM:13998:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1708	22	0.02	0.56	0.0329	0.1208	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.56	0.1537	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	10	4	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	16914	0	0	1	0.0549	0.022	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0769	FALSE	231	204	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	24	MT-ND4	1338	chrM:11097:+	MT-ATP8	5531	chrM:8518:+	INCL_NON_REF_SPLICE	YES	24024	2175	0	0.01	0.0275	0.1318	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1593	FALSE	231	215	16	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	10	4	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	83	6152	0.14	0	0.0549	0.022	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.14	0.0769	FALSE	0	0	0	434	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	10	4	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0.022	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0769	TRUE	13	49	2	38	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	27	MT-ND5	2879	chrM:14215:+	MT-ATP8	5913	chrM:8466:+	INCL_NON_REF_SPLICE	NO	0	16	1	0.66	0.022	0.1483	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	1	0.1703	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	10	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16546	140	0	0.08	0.0549	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.0659	FALSE	230	198	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	26	MT-ND4	1295	chrM:11054:+	MT-ATP8	5413	chrM:8400:+	INCL_NON_REF_SPLICE	YES	20914	0	0	1	0.022	0.1428	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1648	FALSE	231	205	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	10	1	EIF1	1121	chr17:39845257:+	RPS28	8168	chr19:8386425:+	INCL_NON_REF_SPLICE	YES	1189	1	0.01	0.92	0.0549	0.0055	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.92	0.0604	FALSE	0	0	0	81	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	10	1	MT-CO2	1276	chrM:7861:+	MT-ND2	5541	chrM:5326:+	INCL_NON_REF_SPLICE	YES	22276	5430	0	0	0.0549	0.0055	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0604	FALSE	105	46	5	21	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	6	16	MT-ND5	2641	chrM:13977:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	2192	1058	0.01	0.02	0.0329	0.0879	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.1208	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	6	16	MT-ND5	2514	chrM:13850:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2783	140	0.01	0.14	0.0329	0.0879	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.14	0.1208	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	27	MT-ND4	1278	chrM:11037:+	MT-ND4L	5663	chrM:10754:+	INCL_NON_REF_SPLICE	YES	230	0	0.12	1	0.0165	0.1483	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.1648	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	23	MT-ND5	2339	chrM:13675:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	2287	0	0.01	1	0.022	0.1263	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1483	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	23	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	NO	21	22	0.56	0.55	0.022	0.1263	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.56	0.1483	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	19	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	9	678	0.73	0.03	0.0275	0.1043	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.73	0.1318	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	9	3	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	83	5258	0.13	0	0.0494	0.0165	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.13	0.0659	FALSE	0	0	0	434	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	9	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	33	0	0.25	1	0.0494	0.011	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0604	TRUE	0	42	0	133	42	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	8	5	MT-ND4	1262	chrM:11021:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	18349	0	0	1	0.0439	0.0275	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0714	FALSE	231	205	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	267	0	0.07	1	0.0329	0.0714	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.1043	FALSE	344	827	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	17	MT-ND5	2514	chrM:13850:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2783	22	0.01	0.5	0.0275	0.0933	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.5	0.1208	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	7	8	MT-ND5	1969	chrM:13305:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	5484	678	0	0.02	0.0384	0.0439	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0823	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TY	9	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0494	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0494	FALSE	13	214	14	42	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	19	MT-ND4	1287	chrM:11046:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	19710	0	0	1	0.022	0.1043	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1263	FALSE	231	205	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	23	MT-ND5	2712	chrM:14048:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	YES	25	14	0.51	0.65	0.0165	0.1263	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.65	0.1428	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	11	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0.0604	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0933	FALSE	462	80	0	856	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	8	2	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	17468	2177	0	0	0.0439	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0549	FALSE	231	204	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	14	MT-ND4	1285	chrM:11044:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19525	22	0	0.46	0.0275	0.0769	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.46	0.1044	FALSE	231	205	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0.0549	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0878	FALSE	499	1288	110	792	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	7	5	MT-ND5	1648	chrM:12984:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3900	140	0	0.08	0.0384	0.0275	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.0659	FALSE	42	36	7	104	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	17	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	4233	0	0	1	0.022	0.0933	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1153	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATF5--RPS28	8	0	ATF5	1634	chr19:50432592:+	RPS28	9385	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0	ATF5->Oncogene{Bushman},activating_transcription_factor_5,chr19:50431959-50437192:+,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0439	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	8	0	MT-CO2	1240	chrM:7825:+	MT-ND2	5552	chrM:5337:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0439	FALSE	105	46	5	21	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	16	MT-ND5	2303	chrM:13639:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2400	140	0.01	0.12	0.022	0.0879	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.12	0.1099	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	7	4	NPM1P24	1533	chr10:74677760:-	SET	12307	chr9:131456202:+	INCL_NON_REF_SPLICE	NO	83	5779	0.12	0	0.0384	0.022	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.12	0.0604	FALSE	0	0	0	434	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	3	MT-ND4	1164	chrM:10923:+	MT-ATP8	5389	chrM:8376:+	INCL_NON_REF_SPLICE	YES	12522	0	0	1	0.0384	0.0165	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0549	FALSE	230	193	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	11	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	3037	1372	0.01	0.01	0.0275	0.0604	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0879	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	19	MT-ND6	1260	chrM:14414:-	MT-TE	4516	chrM:14752:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0165	0.1043	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.1208	FALSE	499	1288	110	792	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	7	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	18	0	0.36	1	0.0384	0.0165	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.0549	FALSE	16	356	14	466	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	7	2	MT-CO2	1216	chrM:7801:+	MT-ND2	4715	chrM:4500:+	INCL_NON_REF_SPLICE	YES	19144	0	0	1	0.0384	0.011	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0494	FALSE	105	46	5	21	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	18	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	2026	2	0.01	0.91	0.0165	0.0988	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.91	0.1153	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	7	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.82	0.9	0.0384	0.011	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.9	0.0494	FALSE	515	4851	409	746	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	7	1	MT-CO2	1222	chrM:7807:+	MT-ND2	5510	chrM:5295:+	INCL_NON_REF_SPLICE	YES	19730	7079	0	0	0.0384	0.0055	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0439	FALSE	105	46	5	21	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	17	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	23	0	0.47	1	0.0165	0.0933	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.1098	FALSE	344	826	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0384	0.0055	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0439	FALSE	499	1288	110	792	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	4	MT-ND4	1263	chrM:11022:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	18386	3	0	0.77	0.0329	0.022	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.77	0.0549	FALSE	231	205	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	4	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	19168	1313	0	0.01	0.0329	0.022	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0549	FALSE	231	205	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	16	MT-ND5	2430	chrM:13766:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	NO	2029	140	0.01	0.12	0.0165	0.0879	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.12	0.1044	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	16	MT-ND5	2447	chrM:13783:+	MT-ATP8	5921	chrM:8474:+	INCL_NON_REF_SPLICE	YES	2076	188	0.01	0.09	0.0165	0.0879	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.09	0.1044	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	12	MT-ND5	2356	chrM:13692:+	MT-ATP8	5933	chrM:8486:+	INCL_NON_REF_SPLICE	YES	2093	994	0.01	0.02	0.022	0.0659	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0879	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	6	4	NPM1P24	1533	chr10:74677760:-	SET	12301	chr9:131456196:+	INCL_NON_REF_SPLICE	NO	83	5837	0.11	0	0.0329	0.022	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.11	0.0549	FALSE	0	0	0	434	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIM1--DDT	7	0	PIM1	1266	chr6:37138244:+	DDT	12911	chr22:24316023:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0384	0	PIM1->Oncogene{Bushman},Pim-1_proto-oncogene,_serine/threonine_kinase,chr6:37137979-37143202:+,DDT->D-dopachrome_tautomerase,chr22:24313554-24322660:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMLHE--CLIC2	7	0	TMLHE	2332	chrX:154842453:-	CLIC2	18105	chrX:154528458:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0384	0	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,CLIC2->chloride_intracellular_channel_2,chrX:154505500-154563966:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0384	TRUE	5	6	1	7	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	11	MT-ND5	1714	chrM:13050:+	MT-ATP8	5838	chrM:8391:+	INCL_NON_REF_SPLICE	YES	3181	0	0	1	0.022	0.0604	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0824	FALSE	42	36	7	104	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	6	3	NPM1P24	1524	chr10:74677769:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	NO	83	6267	0.1	0	0.0329	0.0165	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.1	0.0494	FALSE	0	0	0	434	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	1	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	18962	2050	0	0	0.0329	0.0055	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0384	FALSE	231	205	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	6	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	TRUE	0	5	1	24	1	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	5	4	MT-CO2	1320	chrM:7905:+	MT-ND2	5552	chrM:5337:+	INCL_NON_REF_SPLICE	YES	23164	4833	0	0	0.0275	0.022	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0495	FALSE	105	46	5	21	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	0	MT-ND4	1003	chrM:10762:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	FALSE	230	189	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	4	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	NO	16403	0	0	1	0.0275	0.022	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0495	FALSE	230	193	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	4	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	16845	0	0	1	0.0275	0.022	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0495	FALSE	231	204	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	12	MT-ND5	1828	chrM:13164:+	MT-ATP8	5867	chrM:8420:+	INCL_NON_REF_SPLICE	YES	3754	0	0	1	0.0165	0.0659	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0824	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	6	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	TRUE	22	156	2	142	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	11	MT-ND5	1846	chrM:13182:+	MT-ATP8	5879	chrM:8432:+	INCL_NON_REF_SPLICE	YES	4952	0	0	1	0.0165	0.0604	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0769	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	2	MT-ND4	1109	chrM:10868:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	8508	0	0	1	0.0275	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0385	FALSE	230	193	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	2	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16145	22	0	0.24	0.0275	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.24	0.0385	FALSE	230	193	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	5	1	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	224	1	0.03	0.86	0.0275	0.0055	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.86	0.033	TRUE	0	0	0	81	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	4	5	MT-CO2	1314	chrM:7899:+	MT-ND2	5383	chrM:5168:+	INCL_NON_REF_SPLICE	YES	23000	10792	0	0	0.022	0.0275	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0495	FALSE	105	46	5	21	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	1	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11109	140	0	0.04	0.0275	0.0055	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.033	FALSE	230	193	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	5	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	NO	16443	0	0	1	0.022	0.0275	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0495	FALSE	230	197	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	9	MT-ND5	2178	chrM:13514:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	4798	1058	0	0.01	0.0165	0.0494	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0659	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0275	FALSE	231	204	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	0	MT-ND5	1128	chrM:12464:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0275	FALSE	41	30	6	101	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	0	MT-ND5	1213	chrM:12549:+	MT-ATP8	5904	chrM:8457:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0275	FALSE	41	30	6	102	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	4	NPM1P24	1535	chr10:74677758:-	SET	12312	chr9:131456207:+	INCL_NON_REF_SPLICE	NO	83	5541	0.09	0	0.022	0.022	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.044	FALSE	0	0	0	434	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	3	7	MT-CO2	1519	chrM:8104:+	MT-ND2	5508	chrM:5293:+	INCL_NON_REF_SPLICE	YES	8744	7064	0	0	0.0165	0.0384	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0549	FALSE	105	46	5	21	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	4	3	MT-CO2	1234	chrM:7819:+	MT-ND2	4719	chrM:4504:+	INCL_NON_REF_SPLICE	YES	20966	0	0	1	0.022	0.0165	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0385	FALSE	105	46	5	21	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	3	7	MT-CO2	1370	chrM:7955:+	MT-ND2	5509	chrM:5294:+	INCL_NON_REF_SPLICE	YES	22368	7050	0	0	0.0165	0.0384	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0549	FALSE	105	46	5	21	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	7	MT-ND5	1628	chrM:12964:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	4165	0	0	1	0.0165	0.0384	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0549	FALSE	42	36	7	104	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	7	MT-ND5	1589	chrM:12925:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	3830	0	0	1	0.0165	0.0384	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0549	FALSE	42	36	7	104	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	7	MT-ND5	1613	chrM:12949:+	MT-ATP8	5867	chrM:8420:+	INCL_NON_REF_SPLICE	YES	4428	0	0	1	0.0165	0.0384	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0549	FALSE	42	36	7	104	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	3	NPM1P24	1529	chr10:74677764:-	SET	12120	chr9:131456015:+	INCL_NON_REF_SPLICE	NO	83	7043	0.08	0	0.022	0.0165	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.0385	FALSE	0	0	0	434	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBL1--PPP4R1L	1	15	RBL1	12024	chr20:35675456:-	PPP4R1L	31512	chr20:56847931:-	ONLY_REF_SPLICE	YES	149	39	0.1	0.29	0.0055	0.0824	RBL1->Oncogene{Bushman},chr20:35624752-35724398:-,chr20:35724188-35725581:+,retinoblastoma-like_1,PPP4R1L->chr20:56806188-56884495:-,protein_phosphatase_4_regulatory_subunit_1_like_(pseudogene)	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.29	0.0879	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.022	0.0165	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.0385	FALSE	407	2205	196	549	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	3	6	MT-CO2	1320	chrM:7905:+	MT-ND2	5203	chrM:4988:+	INCL_NON_REF_SPLICE	NO	23164	14864	0	0	0.0165	0.0329	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0494	FALSE	105	46	5	21	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	6	MT-ND4	1261	chrM:11020:+	MT-ATP8	5407	chrM:8394:+	INCL_NON_REF_SPLICE	YES	18081	0	0	1	0.0165	0.0329	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0494	FALSE	231	205	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	2	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	16845	609	0	0.01	0.022	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.033	FALSE	231	204	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	2	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	NO	16631	188	0	0.03	0.022	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.033	FALSE	231	204	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	2	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	16644	677	0	0.01	0.022	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.033	FALSE	231	204	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	2	MT-ND5	1308	chrM:12644:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	7079	0	0	1	0.022	0.011	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.033	FALSE	42	35	7	104	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	6	MT-ND5	1696	chrM:13032:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3407	140	0	0.06	0.0165	0.0329	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.0494	FALSE	42	36	7	104	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	4	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	21	0	0.22	1	0.022	0.011	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.033	FALSE	0	48	1	163	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	5	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	YES	16725	0	0	1	0.0165	0.0275	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.044	FALSE	231	204	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	1	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	2237	3	0	0.62	0.022	0.0055	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.62	0.0275	FALSE	230	191	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	5	MT-ND5	1369	chrM:12705:+	MT-ATP8	5873	chrM:8426:+	INCL_NON_REF_SPLICE	YES	6814	0	0	1	0.0165	0.0275	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.044	FALSE	42	36	7	104	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	5	MT-ND5	1807	chrM:13143:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	3404	864	0	0.01	0.0165	0.0275	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.044	FALSE	43	37	8	105	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	1	NPM1P24	1377	chr10:74677916:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	YES	16	6152	0.24	0	0.022	0.0055	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.24	0.0275	FALSE	0	0	0	434	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	3	5	RP11-123O10.4	2167	chr12:67285681:-	GRIP1	11081	chr12:66990707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0165	0.0275	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.044	FALSE	0	5	0	12	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B2M--GNAS	4	0	B2M	1137	chr15:45003811:+	GNAS	25752	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Whole_Blood=[count:8=pct:6.1],Blood=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6],Lung=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=18;pct=0.21%;dist=Whole_Blood=9,Lung=3,Pancreas=1,Minor_Salivary_Gland=1,Thyroid=1,Cells_-_EBV-transformed_lymphocytes=1,Muscle_-_Skeletal=1,Colon_-_Transverse=1},B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	14	13	1	7	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	4	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	FALSE	0	24	0	62	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	1200	chrM:10959:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	NO	15697	0	0	1	0.0165	0.022	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0385	FALSE	230	193	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.022	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	FALSE	344	821	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	0	MT-ND5	1082	chrM:12418:+	MT-ATP8	5890	chrM:8443:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.022	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	FALSE	34	25	3	77	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	4	MT-ND5	1671	chrM:13007:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	3663	864	0	0.01	0.0165	0.022	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0385	FALSE	42	36	7	104	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1027	chrM:14647:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.022	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	FALSE	499	1288	110	792	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.022	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	FALSE	462	80	0	856	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	3	3	MT-CO2	1345	chrM:7930:+	MT-ND2	5570	chrM:5355:+	INCL_NON_REF_SPLICE	YES	23092	4089	0	0	0.0165	0.0165	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.033	FALSE	105	46	5	21	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	3	3	MT-CO2	1231	chrM:7816:+	MT-ND2	4715	chrM:4500:+	INCL_NON_REF_SPLICE	YES	20890	0	0	1	0.0165	0.0165	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.033	FALSE	105	46	5	21	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	3	MT-ND4	1192	chrM:10951:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	14602	0	0	1	0.0165	0.0165	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.033	FALSE	230	193	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	3	MT-ND5	1331	chrM:12667:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	6788	0	0	1	0.0165	0.0165	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.033	FALSE	42	35	7	104	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	3	MT-ND5	1627	chrM:12963:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	4174	1058	0	0.01	0.0165	0.0165	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.033	FALSE	42	36	7	104	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0165	0.0165	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.033	FALSE	467	2173	244	435	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	3	2	RP11-155G15.2	3309	chr5:96772337:+	RP11-1E3.1	9053	chr5:97004255:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0165	0.011	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0275	FALSE	0	1	0	8	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	3	1	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	1	45	0.8	0.08	0.0165	0.0055	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.8	0.022	FALSE	1	11	0	34	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	METAP1--EIF4E	3	1	METAP1	1248	chr4:99917018:+	EIF4E	28557	chr4:99823133:-	ONLY_REF_SPLICE	YES	526	25	0.01	0.14	0.0165	0.0055	{Klijn_CCL:Sarcomatoid=1,Stomach=1},LOCAL_INVERSION:+:-:[64983],METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1,EIF4E->Oncogene{Bushman},chr4:99792835-99851788:-,eukaryotic_translation_initiation_factor_4E	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.14	0.022	FALSE	0	1	0	7	1	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	3	1	MT-CO2	1230	chrM:7815:+	MT-ND2	5518	chrM:5303:+	INCL_NON_REF_SPLICE	YES	20713	6614	0	0	0.0165	0.0055	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.022	FALSE	105	46	5	21	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	3	1	MT-CO2	1217	chrM:7802:+	MT-ND2	5506	chrM:5291:+	INCL_NON_REF_SPLICE	NO	19227	7058	0	0	0.0165	0.0055	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.022	FALSE	105	46	5	21	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1170	chrM:10929:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12992	140	0	0.03	0.0165	0.0055	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.022	FALSE	230	193	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0165	0.0055	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	FALSE	344	821	44	306	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1062	chrM:10821:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0165	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0165	FALSE	230	192	14	283	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1378	chr10:74677915:-	SET	12395	chr9:131456290:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0165	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0165	TRUE	0	0	0	434	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0165	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0165	FALSE	292	1546	117	613	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUPT6H--MT-CO3	3	0	SUPT6H	27943	chr17:27028032:+	MT-CO3	32646	chrM:9244:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0165	0	SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0165	FALSE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CACNA1B--EHMT1	2	3	CACNA1B	23294	chr9:140919624:+	EHMT1	81418	chr9:140685300:+	ONLY_REF_SPLICE	YES	391	214	0.01	0.02	0.011	0.0165	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Frontal_Cortex_(BA9)=1},LOCAL_REARRANGEMENT:+:[7773],CACNA1B->calcium_voltage-gated_channel_subunit_alpha1_B,chr9:140772241-141019076:+,EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0275	FALSE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAP4K1--NCF2	2	1	MAP4K1	19048	chr19:39083922:-	NCF2	35979	chr1:183533165:-	ONLY_REF_SPLICE	YES	113	3767	0.03	0	0.011	0.0055	MAP4K1->chr19:39078281-39109522:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_1,NCF2->chr1:183524698-183560011:-,neutrophil_cytosolic_factor_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0165	FALSE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0.0055	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0165	FALSE	93	270	15	244	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAG2--CT45A1	2	1	STAG2	2645	chrX:123095706:+	CT45A1	47657	chrX:134852696:+	ONLY_REF_SPLICE	YES	314	150	0.01	0.02	0.011	0.0055	STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,CT45A1->cancer/testis_antigen_family_45,_member_A1,chrX:134847185-134857354:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0165	FALSE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C14orf37--PSMA3	2	0	C14orf37	1185	chr14:58764673:-	PSMA3	29605	chr14:58734192:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	FALSE	0	2	0	2	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALCOCO2--UBR2	2	0	CALCOCO2	4350	chr17:46919249:+	UBR2	63969	chr6:42643794:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	CALCOCO2->calcium_binding_and_coiled-coil_domain_2,chr17:46908350-46943884:+,UBR2->chr6:42531800-42661242:+,ubiquitin_protein_ligase_E3_component_n-recognin_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--CHMP1A	2	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	95	74	6	34	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GCN1L1--TESC	2	0	GCN1L1	3198	chr12:120622627:-	TESC	55611	chr12:117484643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	GCN1L1->chr12:120565007-120632513:-,TESC->chr12:117476728-117537284:-,tescalcin	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IRF4--TTC17	2	0	IRF4	1071	chr6:391809:+	TTC17	47431	chr11:43511789:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	IRF4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:391739-411447:+,interferon_regulatory_factor_4,TTC17->chr11:43380482-43516483:+,tetratricopeptide_repeat_domain_17	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	2	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	FALSE	0	26	0	50	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NSL1--LPGAT1	2	0	NSL1	4740	chr1:212955714:-	LPGAT1	17789	chr1:211966532:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	NSL1->NSL1,_MIS12_kinetochore_complex_component,chr1:212899495-212965124:-,LPGAT1->chr1:211916799-212004114:-,lysophosphatidylglycerol_acyltransferase_1	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	P2RY8--LUC7L2	2	0	P2RY8	1187	chrX:1655814:-	LUC7L2	13839	chr7:139083345:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	P2RY8->Oncogene{Bushman},chrX:1581465-1656000:-,chrY:1531465-1606000:-,purinergic_receptor_P2Y8,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PI4KA--RAC2	2	0	PI4KA	1848	chr22:21212858:-	RAC2	60087	chr22:37622843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha,RAC2->Oncogene{Bushman},chr22:37621301-37640488:-,ras-related_C3_botulinum_toxin_substrate_2_(rho_family,_small_GTP_binding_protein_Rac2)	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIAS2--SMAD2	2	0	PIAS2	2822	chr18:44497285:-	SMAD2	37363	chr18:45423180:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},PIAS2->chr18:44388353-44500123:-,protein_inhibitor_of_activated_STAT_2,SMAD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_2,chr18:45357922-45457515:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRDM1--HBS1L	1	4	PRDM1	3130	chr6:106536324:+	HBS1L	19348	chr6:135363264:-	ONLY_REF_SPLICE	YES	0	171	1	0.03	0.0055	0.022	PRDM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},PR_domain_1,chr6:106534195-106557814:+,HBS1L->HBS1_like_translational_GTPase,chr6:135281516-135424194:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0275	TRUE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--NARF	2	0	RCC1	2920	chr1:28835417:+	NARF	32361	chr17:80443373:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,NARF->chr17:80416056-80448413:+,nuclear_prelamin_A_recognition_factor	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-38J22.6--NUP107	2	0	RP11-38J22.6	4771	chr1:206289367:-	NUP107	21616	chr12:69109407:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	RP11-38J22.6->chr1:206288156-206306131:-,NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SELT--SETBP1	2	0	SELT	1625	chr3:150321286:+	SETBP1	16459	chr18:42281140:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	SELT->chr3:150320662-150348222:+,SETBP1->Oncogene{Bushman},SET_binding_protein_1,chr18:42260138-42648475:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SETD5--SETD5-AS1	2	0	SETD5	1363	chr3:9439661:+	SETD5-AS1	42729	chr3:9433510:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	NEIGHBORS_OVERLAP:+:-:[964],SETD5->SET_domain_containing_5,chr3:9439299-9520924:+,SETD5-AS1->chr3:9391373-9440263:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	FALSE	0	0	0	2	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMIM20--SEL1L3	2	0	SMIM20	1324	chr4:25863775:+	SEL1L3	11260	chr4:25849486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	NEIGHBORS_OVERLAP:+:-:[1930],SMIM20->chr4:25863452-25931435:+,small_integral_membrane_protein_20,SEL1L3->SEL1L_family_member_3,chr4:25749055-25865382:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	FALSE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USF2--ANKHD1	2	0	USF2	3164	chr19:35762044:+	ANKHD1	46776	chr5:139916974:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	USF2->chr19:35759881-35770724:+,upstream_transcription_factor_2,_c-fos_interacting,ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZC3H7A--SNN	2	0	ZC3H7A	1144	chr16:11890980:-	SNN	29487	chr16:11769831:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_INVERSION:-:+:[71427],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,SNN->chr16:11762270-11773015:+,stannin	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	2	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF320--TXNL1	2	0	ZNF320	1174	chr19:53400773:-	TXNL1	25941	chr18:54293688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	ZNF320->chr19:53367043-53400946:-,zinc_finger_protein_320,TXNL1->chr18:54264439-54318831:-,thioredoxin_like_1	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	0	0	0	1	0	TRUE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF736--CHMP1A	2	0	ZNF736	8361	chr7:63797360:+	CHMP1A	24290	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adipose_Tissue=[count:2=pct:0.7],Breast=[count:2=pct:1.8],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=25;pct=0.29%;dist=Thyroid=4,Cells_-_Transformed_fibroblasts=3,Breast_-_Mammary_Tissue=2,Esophagus_-_Mucosa=2,Ovary=1,Pancreas=1,Lung=1,Vagina=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Colon_-_Sigmoid=1,Testis=1,Colon_-_Transverse=1},ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	10	14	2	10	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CACNA1B--EHMT1	1	3	CACNA1B	13364	chr9:140870471:+	EHMT1	83740	chr9:140693265:+	ONLY_REF_SPLICE	NO	299	255	0.01	0.02	0.0055	0.0165	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Frontal_Cortex_(BA9)=1},LOCAL_REARRANGEMENT:+:[7773],CACNA1B->calcium_voltage-gated_channel_subunit_alpha1_B,chr9:140772241-141019076:+,EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF4--FUS	1	2	TCF4	11275	chr18:53252511:-	FUS	64569	chr16:31199646:+	ONLY_REF_SPLICE	YES	1684	2813	0	0	0.0055	0.011	TCF4->chr18:52889562-53332018:-,transcription_factor_4,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0165	FALSE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD12--NDUFV2	1	1	ANKRD12	1869	chr18:9137094:+	NDUFV2	35941	chr18:9117836:+	ONLY_REF_SPLICE	YES	242	1134	0.01	0	0.0055	0.0055	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[1883],ANKRD12->ankyrin_repeat_domain_12,chr18:9136226-9285983:+,NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.011	FALSE	0	0	1	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf186--ZC3H13	1	1	C1orf186	1543	chr1:206288105:-	ZC3H13	24078	chr13:46563232:-	ONLY_REF_SPLICE	NO	1298	192	0	0.01	0.0055	0.0055	C1orf186->chr1:206238872-206288647:-,chromosome_1_open_reading_frame_186,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.011	FALSE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBX1--ATP5A1	1	1	CBX1	1254	chr17:46178630:-	ATP5A1	19580	chr18:43671817:-	ONLY_REF_SPLICE	YES	1151	5604	0	0	0.0055	0.0055	CBX1->chr17:46147414-46178883:-,chromobox_1,ATP5A1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_alpha_subunit_1,_cardiac_muscle,chr18:43664110-43684300:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.011	FALSE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTDSPL2--B2M	1	1	CTDSPL2	1539	chr15:44719970:+	B2M	29463	chr15:45007621:+	ONLY_REF_SPLICE	YES	169	380	0.01	0.01	0.0055	0.0055	CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.011	FALSE	0	0	0	4	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--TAF1D	1	1	DANCR	1530	chr4:53579126:+	TAF1D	15630	chr11:93467826:-	ONLY_REF_SPLICE	YES	1048	910	0	0	0.0055	0.0055	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.011	FALSE	0	1	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--TFEC	1	1	DANCR	1530	chr4:53579126:+	TFEC	12877	chr7:115752092:-	ONLY_REF_SPLICE	YES	1048	432	0	0	0.0055	0.0055	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,TFEC->chr7:115575202-115799950:-,transcription_factor_EC	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.011	FALSE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HS2ST1--SEP15	1	1	HS2ST1	1513	chr1:87380843:+	SEP15	28222	chr1:87346408:-	ONLY_REF_SPLICE	YES	166	1248	0.01	0	0.0055	0.0055	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.011	FALSE	0	3	0	8	1	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HS2ST1--SEP15	1	1	HS2ST1	1513	chr1:87380843:+	SEP15	26013	chr1:87369131:-	ONLY_REF_SPLICE	YES	166	118	0.01	0.02	0.0055	0.0055	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.011	FALSE	0	2	0	9	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LMTK2--EIF3J	1	1	LMTK2	9277	chr7:97800986:+	EIF3J	31702	chr15:44852447:+	ONLY_REF_SPLICE	NO	26	743	0.07	0	0.0055	0.0055	LMTK2->chr7:97736197-97838945:+,lemur_tyrosine_kinase_2,EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.011	FALSE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTPN--SND1	1	1	MTPN	3357	chr7:135635347:-	SND1	32230	chr7:127569241:+	ONLY_REF_SPLICE	YES	1019	1113	0	0	0.0055	0.0055	MTPN->chr7:135611509-135662101:-,myotrophin,SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.011	FALSE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	23	0	0.08	1	0.0055	0.0055	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.011	FALSE	164	806	69	479	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PARM1--POU2AF1	1	1	PARM1	1276	chr4:75858580:+	POU2AF1	29097	chr11:111229643:-	ONLY_REF_SPLICE	NO	1303	1724	0	0	0.0055	0.0055	PARM1->chr4:75858305-75975325:+,prostate_androgen-regulated_mucin-like_protein_1,POU2AF1->Oncogene{Bushman},POU_class_2_associating_factor_1,chr11:111222977-111326355:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.011	FALSE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--SYTL2	1	1	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	477	0	0	1	0.0055	0.0055	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.011	FALSE	4	2	0	20	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR3K--SNX5	1	1	POLR3K	1153	chr16:103476:-	SNX5	14566	chr20:17934761:-	ONLY_REF_SPLICE	YES	1026	1597	0	0	0.0055	0.0055	POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.011	FALSE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--CHMP1A	1	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	268	262	0.01	0.01	0.0055	0.0055	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.011	FALSE	13	55	3	29	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL22--TCFL5	1	1	RPL22	8153	chr1:6252990:-	TCFL5	16627	chr20:61491660:-	ONLY_REF_SPLICE	YES	3516	7	0	0.22	0.0055	0.0055	RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22,TCFL5->chr20:61472467-61493115:-,transcription_factor_like_5	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.22	0.011	FALSE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDCCAG8--CEP170	1	1	SDCCAG8	1223	chr1:243419542:+	CEP170	34466	chr1:243388623:-	ONLY_REF_SPLICE	YES	73	224	0.03	0.01	0.0055	0.0055	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[670],SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.011	FALSE	0	3	1	3	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0055	0.0055	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.011	TRUE	62	24	1	171	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TPR--HCLS1	1	1	TPR	35633	chr1:186296592:-	HCLS1	57321	chr3:121363775:-	ONLY_REF_SPLICE	YES	664	1504	0	0	0.0055	0.0055	TPR->Oncogene{Bushman},chr1:186280784-186344825:-,translocated_promoter_region,_nuclear_basket_protein,HCLS1->chr3:121350246-121379774:-,hematopoietic_cell-specific_Lyn_substrate_1	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.011	FALSE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSHZ1--ZADH2	1	1	TSHZ1	1489	chr18:72923198:+	ZADH2	19481	chr18:72914295:-	ONLY_REF_SPLICE	YES	111	227	0.02	0.01	0.0055	0.0055	LOCAL_INVERSION:+:-:[1407],TSHZ1->chr18:72922710-73001905:+,teashirt_zinc_finger_homeobox_1,ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.011	FALSE	0	0	0	2	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--CTBP1	1	1	UVSSA	7499	chr4:1349033:+	CTBP1	24040	chr4:1235307:-	ONLY_REF_SPLICE	YES	92	88	0.02	0.02	0.0055	0.0055	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.011	TRUE	23	5	0	14	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	72	0	0.03	1	0.0055	0.0055	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.011	FALSE	272	151	14	158	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YAF2--PPHLN1	1	1	YAF2	1751	chr12:42631401:-	PPHLN1	43594	chr12:42835117:+	ONLY_REF_SPLICE	YES	194	384	0.01	0.01	0.0055	0.0055	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=2,Pancreas=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[98],YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,PPHLN1->chr12:42632249-42853517:+,periphilin_1	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.011	FALSE	0	2	0	4	1	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZC3HC1--NRF1	1	1	ZC3HC1	1231	chr7:129691061:-	NRF1	24232	chr7:129297183:+	ONLY_REF_SPLICE	YES	174	32	0.01	0.06	0.0055	0.0055	ZC3HC1->chr7:129658126-129691291:-,zinc_finger_C3HC-type_containing_1,NRF1->Oncogene{Bushman},chr7:129251555-129396922:+,nuclear_respiratory_factor_1	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.011	FALSE	0	0	0	1	0	FALSE	ACH-000158
OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFYVE21--KLC1	1	1	ZFYVE21	1250	chr14:104182316:+	KLC1	34861	chr14:104166992:+	ONLY_REF_SPLICE	YES	81	64	0.02	0.03	0.0055	0.0055	GTEx_FI:{Esophagus=[count:4=pct:1.0],Brain=[count:3=pct:0.5],Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Colon=[count:1=pct:0.5],Pituitary=[count:1=pct:1.9],Breast=[count:1=pct:0.9]},GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_REARRANGEMENT:+:[14179],ZFYVE21->chr14:104182067-104200005:+,zinc_finger_FYVE-type_containing_21,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	OCILY3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.011	TRUE	10	10	1	10	0	FALSE	ACH-000158
OUMS23_LARGE_INTESTINE	NCOA3--EYA2	476	103	NCOA3	1163	chr20:46130763:+	EYA2	46927	chr20:45808446:+	ONLY_REF_SPLICE	YES	27	24	0.96	0.96	4.4257	0.9577	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	OUMS23_LARGE_INTESTINE	0.96	0.96	5.3834	TRUE	0	0	0	2	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	ELF1--C4orf45	162	34	ELF1	3990	chr13:41556119:-	C4orf45	22910	chr4:159836511:-	ONLY_REF_SPLICE	YES	100	0	0.66	1	1.5062	0.3161	{Klijn_CCL:Colo-Rectal=1},ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-,C4orf45->chr4:159814286-159959912:-,chromosome_4_open_reading_frame_45	OUMS23_LARGE_INTESTINE	0.66	1	1.8223	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	FABP3--RP11-439L8.2	109	62	FABP3	2630	chr1:31845789:-	RP11-439L8.2	9863	chr1:31961483:-	INCL_NON_REF_SPLICE	YES	432	0	0.28	1	1.0135	0.5765	FABP3->Oncogene{Bushman},chr1:31838472-31849697:-,fatty_acid_binding_protein_3,RP11-439L8.2->chr1:31960436-31961777:-	OUMS23_LARGE_INTESTINE	0.28	1	1.59	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	52	235	MT-ND4	1299	chrM:11058:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	40	0	0.88	1	0.4835	2.185	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.88	1	2.6685	FALSE	344	827	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	KIAA1217--RNF17	96	38	KIAA1217	12390	chr10:24727408:+	RNF17	57519	chr13:25399757:+	ONLY_REF_SPLICE	YES	21	0	0.86	1	0.8926	0.3533	{Klijn_CCL:Colo-Rectal=1},KIAA1217->KIAA1217,chr10:23983675-24836772:+,RNF17->chr13:25338290-25454059:+,ring_finger_protein_17	OUMS23_LARGE_INTESTINE	0.86	1	1.2459	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	TIMM23B--LINC00843	81	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7531	0.1302	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OUMS23_LARGE_INTESTINE	0.99	1	0.8833	TRUE	508	994	45	981	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-TA--MT-TC	81	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7531	0.0744	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OUMS23_LARGE_INTESTINE	1	1	0.8275	FALSE	462	80	0	856	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	TMEM259--SBNO2	74	34	TMEM259	6870	chr19:1011095:-	SBNO2	24400	chr19:1119163:-	ONLY_REF_SPLICE	YES	156	40	0.41	0.73	0.688	0.3161	LOCAL_REARRANGEMENT:-:[86519],TMEM259->chr19:1009647-1021117:-,transmembrane_protein_259,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	OUMS23_LARGE_INTESTINE	0.41	0.73	1.0041	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND6--MT-TE	69	9	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.6415	0.0837	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OUMS23_LARGE_INTESTINE	0.99	1	0.7252	FALSE	499	1288	110	792	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	243	MT-ND4	1820	chrM:11579:+	MT-ND4L	5416	chrM:10507:+	INCL_NON_REF_SPLICE	YES	5941	0	0.04	1	0.0279	2.2594	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.04	1	2.2873	FALSE	344	827	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	242	MT-ND4	1519	chrM:11278:+	MT-ND4L	5394	chrM:10485:+	INCL_NON_REF_SPLICE	YES	486	0	0.34	1	0.0279	2.2501	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.34	1	2.278	FALSE	344	827	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	237	MT-ND4	1299	chrM:11058:+	MT-ND4L	5462	chrM:10553:+	INCL_NON_REF_SPLICE	YES	40	0	0.86	1	0.0372	2.2036	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.86	1	2.2408	FALSE	344	827	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	234	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	20	0	0.92	1	0.0279	2.1757	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.92	1	2.2036	FALSE	344	826	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	233	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	11	0	0.96	1	0.0279	2.1664	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.96	1	2.1943	FALSE	344	826	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	19	160	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	4519	0	0.04	1	0.1767	1.4876	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.04	1	1.6643	FALSE	344	827	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	214	MT-ND4	1092	chrM:10851:+	MT-ND4L	5537	chrM:10628:+	INCL_NON_REF_SPLICE	YES	3	0	0.99	1	0.0372	1.9897	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.99	1	2.0269	FALSE	344	826	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	TMEM259--SBNO2	50	20	TMEM259	6599	chr19:1011366:-	SBNO2	24400	chr19:1119163:-	ONLY_REF_SPLICE	YES	153	40	0.31	0.64	0.4649	0.186	LOCAL_REARRANGEMENT:-:[86519],TMEM259->chr19:1009647-1021117:-,transmembrane_protein_259,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	OUMS23_LARGE_INTESTINE	0.31	0.64	0.6509	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	11	170	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.98	1	0.1023	1.5806	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.98	1	1.6829	FALSE	344	821	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	PARP4--CNTNAP2	48	14	PARP4	2238	chr13:25077783:-	CNTNAP2	63577	chr7:147926738:+	ONLY_REF_SPLICE	YES	26	0	0.7	1	0.4463	0.1302	PARP4->chr13:24995064-25086948:-,poly(ADP-ribose)_polymerase_family_member_4,CNTNAP2->chr7:145813453-148118090:+,contactin_associated_protein-like_2	OUMS23_LARGE_INTESTINE	0.7	1	0.5765	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	TIMM23--RP11-464F9.1	49	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	151	3	0.26	0.95	0.4556	0.0372	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OUMS23_LARGE_INTESTINE	0.26	0.95	0.4928	TRUE	519	3926	326	965	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	173	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	8	0	0.96	1	0.0558	1.6085	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.96	1	1.6643	FALSE	344	826	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	175	MT-ND4	1301	chrM:11060:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	40	0	0.82	1	0.0372	1.6271	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.82	1	1.6643	FALSE	344	827	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	PARP4--CNTNAP2	40	0	PARP4	1105	chr13:25086844:-	CNTNAP2	63577	chr7:147926738:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3719	0	PARP4->chr13:24995064-25086948:-,poly(ADP-ribose)_polymerase_family_member_4,CNTNAP2->chr7:145813453-148118090:+,contactin_associated_protein-like_2	OUMS23_LARGE_INTESTINE	1	1	0.3719	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	PLXDC1--TAF13	40	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3719	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	OUMS23_LARGE_INTESTINE	1	1	0.3719	TRUE	7	10	0	216	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	AAK1--AC092431.3	37	9	AAK1	3410	chr2:69870010:-	AC092431.3	40957	chr2:69927507:-	ONLY_REF_SPLICE	YES	13	0	0.78	1	0.344	0.0837	LOCAL_REARRANGEMENT:-:[25843],AAK1->AP2_associated_kinase_1,chr2:69688532-69901481:-,AC092431.3->chr2:69927324-69940979:-	OUMS23_LARGE_INTESTINE	0.78	1	0.4277	TRUE	0	3	0	1	3	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	137	MT-ND4	1499	chrM:11258:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	359	0	0.28	1	0.0279	1.2738	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.28	1	1.3017	FALSE	344	827	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	20	54	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	10260	0	0.01	1	0.186	0.5021	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.01	1	0.6881	FALSE	328	800	43	304	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	NCOA3--EYA2	19	38	NCOA3	1163	chr20:46130763:+	EYA2	47944	chr20:45809463:+	ONLY_REF_SPLICE	YES	27	74	0.68	0.44	0.1767	0.3533	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	OUMS23_LARGE_INTESTINE	0.44	0.68	0.53	TRUE	0	0	0	2	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-494M8.4--OVCH2	25	10	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	4	0	0.9	1	0.2324	0.093	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	OUMS23_LARGE_INTESTINE	0.9	1	0.3254	FALSE	32	0	0	22	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND6--MT-TE	22	21	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.2046	0.1953	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OUMS23_LARGE_INTESTINE	0.91	1	0.3999	FALSE	499	1288	110	792	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND6--MT-TE	25	9	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2324	0.0837	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OUMS23_LARGE_INTESTINE	0.97	1	0.3161	FALSE	499	1288	110	792	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-TA--MT-TC	22	9	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2046	0.0837	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OUMS23_LARGE_INTESTINE	1	1	0.2883	FALSE	462	80	0	856	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	CWC25--FBXO47	23	2	CWC25	7334	chr17:36965955:-	FBXO47	19869	chr17:37111186:-	ONLY_REF_SPLICE	YES	18	0	0.58	1	0.2138	0.0186	{Klijn_CCL:Colo-Rectal=1},CWC25->CWC25_spliceosome-associated_protein_homolog,chr17:36956687-36981734:-,FBXO47->F-box_protein_47,chr17:37092685-37123655:-	OUMS23_LARGE_INTESTINE	0.58	1	0.2324	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	15	32	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	284	0	0.14	1	0.1395	0.2975	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.14	1	0.437	FALSE	344	827	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	AP003900.6--AC011718.2	20	7	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	2	0	0.93	1	0.186	0.0651	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	OUMS23_LARGE_INTESTINE	0.93	1	0.2511	TRUE	0	5	0	45	5	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	TPT1--H19	21	2	TPT1	1319	chr13:45915187:-	H19	11854	chr11:2017003:-	INCL_NON_REF_SPLICE	YES	3685	7756	0.01	0	0.1953	0.0186	TPT1->chr13:45911008-45915505:-,tumor_protein,_translationally-controlled_1,H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-	OUMS23_LARGE_INTESTINE	0	0.01	0.2139	TRUE	0	0	0	4	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	68	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0372	0.6322	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.97	1	0.6694	FALSE	344	821	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	SPIDR--XKR4	18	12	SPIDR	7740	chr8:48206619:+	XKR4	42978	chr8:56435840:+	ONLY_REF_SPLICE	YES	30	0	0.5	1	0.1674	0.1116	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,XKR4->XK_related_4,chr8:56014949-56454613:+	OUMS23_LARGE_INTESTINE	0.5	1	0.279	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	NCOA3--EYA2	18	11	NCOA3	1163	chr20:46130763:+	EYA2	49066	chr20:45811939:+	ONLY_REF_SPLICE	YES	27	143	0.52	0.17	0.1674	0.1023	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	OUMS23_LARGE_INTESTINE	0.17	0.52	0.2697	TRUE	0	0	0	2	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	20	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.186	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	1	1	0.186	FALSE	230	193	14	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	TMEM259--SBNO2	8	40	TMEM259	7165	chr19:1010800:-	SBNO2	24355	chr19:1119208:-	INCL_NON_REF_SPLICE	YES	171	43	0.22	0.53	0.0744	0.3719	LOCAL_REARRANGEMENT:-:[86519],TMEM259->chr19:1009647-1021117:-,transmembrane_protein_259,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	OUMS23_LARGE_INTESTINE	0.22	0.53	0.4463	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	C15orf57--CBX3	17	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	26	13	0.43	0.61	0.1581	0.0279	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OUMS23_LARGE_INTESTINE	0.43	0.61	0.186	TRUE	267	562	48	632	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	FABP3--RP11-439L8.2	6	47	FABP3	2630	chr1:31845789:-	RP11-439L8.2	9874	chr1:31961472:-	INCL_NON_REF_SPLICE	YES	432	0	0.11	1	0.0558	0.437	FABP3->Oncogene{Bushman},chr1:31838472-31849697:-,fatty_acid_binding_protein_3,RP11-439L8.2->chr1:31960436-31961777:-	OUMS23_LARGE_INTESTINE	0.11	1	0.4928	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	52	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	14	0	0.8	1	0.0372	0.4835	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.8	1	0.5207	FALSE	344	826	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	NIPA2--POLA1	17	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1581	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	OUMS23_LARGE_INTESTINE	1	1	0.1581	TRUE	46	1352	75	139	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	9	31	MT-ND4	1447	chrM:11206:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	199	0	0.17	1	0.0837	0.2882	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.17	1	0.3719	FALSE	344	827	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-266E6.3--LINC00457	16	3	RP11-266E6.3	1183	chr13:35245137:-	LINC00457	6355	chr13:35108542:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1488	0.0279	NEIGHBORS_OVERLAP:-:-:[94756],RP11-266E6.3->chr13:35120066-35245319:-,LINC00457->chr13:35009587-35214822:-,long_intergenic_non-protein_coding_RNA_457	OUMS23_LARGE_INTESTINE	1	1	0.1767	FALSE	0	0	0	1	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	54	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	486	0	0.1	1	0.0279	0.5021	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.1	1	0.53	FALSE	344	827	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	52	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	17	0	0.76	1	0.0279	0.4835	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.76	1	0.5114	FALSE	344	826	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	8	31	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	19	0	0.67	1	0.0744	0.2882	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.67	1	0.3626	FALSE	344	826	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	ASAP2--TONSL	15	1	ASAP2	1466	chr2:9347359:+	TONSL	43717	chr8:145660272:-	ONLY_REF_SPLICE	YES	27	26	0.37	0.38	0.1395	0.0093	HGNC_GENEFAM,ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,TONSL->chr8:145654165-145669827:-,tonsoku-like,_DNA_repair_protein	OUMS23_LARGE_INTESTINE	0.37	0.38	0.1488	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND6--MT-TE	6	34	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.0558	0.3161	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OUMS23_LARGE_INTESTINE	0.91	1	0.3719	FALSE	499	1288	110	792	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	41	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.0279	0.3812	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.94	1	0.4091	FALSE	344	826	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	NFAT5--CYB5B	11	9	NFAT5	11148	chr16:69693802:+	CYB5B	35547	chr16:69481053:+	ONLY_REF_SPLICE	YES	22	693	0.48	0.03	0.1023	0.0837	LOCAL_REARRANGEMENT:+:[98828],NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	OUMS23_LARGE_INTESTINE	0.03	0.48	0.186	TRUE	0	0	0	1	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	FLNB--SLMAP	12	4	FLNB	28611	chr3:58118658:+	SLMAP	84514	chr3:57902633:+	ONLY_REF_SPLICE	YES	75	31	0.18	0.34	0.1116	0.0372	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	OUMS23_LARGE_INTESTINE	0.18	0.34	0.1488	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	30	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0465	0.2789	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.92	1	0.3254	FALSE	344	821	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-123O10.4--GRIP1	12	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1116	0.0093	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OUMS23_LARGE_INTESTINE	1	1	0.1209	FALSE	416	2512	207	587	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	31	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	20	0	0.64	1	0.0372	0.2882	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.64	1	0.3254	FALSE	344	826	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	11	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1023	0.0279	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OUMS23_LARGE_INTESTINE	1	1	0.1302	FALSE	515	4851	409	746	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	KIAA1217--RNF17	2	38	KIAA1217	12390	chr10:24727408:+	RNF17	56337	chr13:25398334:+	ONLY_REF_SPLICE	YES	21	0	0.66	1	0.0186	0.3533	{Klijn_CCL:Colo-Rectal=1},KIAA1217->KIAA1217,chr10:23983675-24836772:+,RNF17->chr13:25338290-25454059:+,ring_finger_protein_17	OUMS23_LARGE_INTESTINE	0.66	1	0.3719	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	TMEM259--SBNO2	3	34	TMEM259	6975	chr19:1010990:-	SBNO2	24400	chr19:1119163:-	ONLY_REF_SPLICE	YES	161	40	0.19	0.48	0.0279	0.3161	LOCAL_REARRANGEMENT:-:[86519],TMEM259->chr19:1009647-1021117:-,transmembrane_protein_259,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	OUMS23_LARGE_INTESTINE	0.19	0.48	0.344	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	25	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	18	0	0.62	1	0.0465	0.2324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.62	1	0.2789	FALSE	344	826	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	17	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	20	0	0.55	1	0.0651	0.1581	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.55	1	0.2232	FALSE	344	826	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-TA--MT-TC	11	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1023	0.0093	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OUMS23_LARGE_INTESTINE	1	1	0.1116	FALSE	462	80	0	856	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	11	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1023	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	1	1	0.1023	FALSE	230	198	14	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	32	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	572	0	0.06	1	0.0279	0.2975	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.06	1	0.3254	FALSE	344	827	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1023	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OUMS23_LARGE_INTESTINE	1	1	0.1023	TRUE	0	0	0	434	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	EZR--RP1-111C20.3	10	2	EZR	2248	chr6:159239114:-	RP1-111C20.3	18753	chr6:159485970:-	ONLY_REF_SPLICE	YES	1356	0	0.01	1	0.093	0.0186	EZR->chr6:159186773-159240444:-,ezrin,RP1-111C20.3->chr6:159485760-159486305:-	OUMS23_LARGE_INTESTINE	0.01	1	0.1116	TRUE	0	0	0	1	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	6	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11974	4	0	0.79	0.0837	0.0558	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	0.79	0.1395	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-TA--MT-TC	8	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0744	0.093	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OUMS23_LARGE_INTESTINE	1	1	0.1674	FALSE	462	80	0	856	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	DSCR4--KCNJ6	10	1	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	11	0	0.5	1	0.093	0.0093	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	OUMS23_LARGE_INTESTINE	0.5	1	0.1023	FALSE	0	24	0	27	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-120D5.1--MID1	10	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	13	1	0.46	0.093	0.0093	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OUMS23_LARGE_INTESTINE	0.46	1	0.1023	FALSE	16	356	14	466	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	9	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0837	0.0465	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OUMS23_LARGE_INTESTINE	1	1	0.1302	FALSE	407	2205	196	549	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND3--MT-ATP8	10	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.093	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	1	1	0.093	FALSE	351	233	23	137	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	10	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.093	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	1	1	0.093	FALSE	231	205	14	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND6--MT-TE	4	24	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0372	0.2231	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OUMS23_LARGE_INTESTINE	0.97	1	0.2603	FALSE	499	1288	110	792	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MTATP6P1--MT-ND1	10	0	MTATP6P1	1126	chr1:569201:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.093	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	OUMS23_LARGE_INTESTINE	1	1	0.093	FALSE	16	0	0	13	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND6--MT-TE	4	23	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0372	0.2138	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OUMS23_LARGE_INTESTINE	0.9	1	0.251	FALSE	499	1288	110	792	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	12979	0	0	1	0.0837	0.0186	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	1	0.1023	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	ELF1--C4orf45	8	5	ELF1	3990	chr13:41556119:-	C4orf45	24100	chr4:159814869:-	ONLY_REF_SPLICE	YES	100	8	0.12	0.62	0.0744	0.0465	{Klijn_CCL:Colo-Rectal=1},ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-,C4orf45->chr4:159814286-159959912:-,chromosome_4_open_reading_frame_45	OUMS23_LARGE_INTESTINE	0.12	0.62	0.1209	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND6--MT-TE	9	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0837	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OUMS23_LARGE_INTESTINE	1	1	0.0837	FALSE	499	1288	110	792	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	7	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11653	50	0	0.22	0.0651	0.0651	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	0.22	0.1302	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND5--MT-CO3	6	11	MT-ND5	2667	chrM:14003:+	MT-CO3	5959	chrM:9353:+	INCL_NON_REF_SPLICE	YES	1259	7617	0.01	0	0.0558	0.1023	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OUMS23_LARGE_INTESTINE	0	0.01	0.1581	FALSE	0	15	2	18	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	10	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11868	50	0	0.24	0.0558	0.093	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	0.24	0.1488	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-680G10.1--GSE1	8	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	24	1	0.27	0.0744	0.0093	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	OUMS23_LARGE_INTESTINE	0.27	1	0.0837	TRUE	465	1949	224	605	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	0	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0744	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	1	1	0.0744	FALSE	230	193	14	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-TA--MT-TY	8	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0744	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OUMS23_LARGE_INTESTINE	1	1	0.0744	FALSE	13	214	14	42	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND5--MT-CO3	6	7	MT-ND5	2730	chrM:14066:+	MT-CO3	6178	chrM:9572:+	INCL_NON_REF_SPLICE	NO	3	14621	0.81	0	0.0558	0.0651	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OUMS23_LARGE_INTESTINE	0	0.81	0.1209	FALSE	0	15	2	17	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	H19--MT-ND2	7	2	H19	4385	chr11:2016974:-	MT-ND2	8810	chrM:5326:+	INCL_NON_REF_SPLICE	YES	7935	4511	0	0	0.0651	0.0186	H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OUMS23_LARGE_INTESTINE	0	0	0.0837	FALSE	0	0	0	3	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	ALDOA--MT-CO3	7	1	ALDOA	8828	chr16:30078600:+	MT-CO3	15355	chrM:9555:+	INCL_NON_REF_SPLICE	YES	1464	14799	0.01	0	0.0651	0.0093	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OUMS23_LARGE_INTESTINE	0	0.01	0.0744	FALSE	0	0	0	5	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	9	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	12085	0	0	1	0.0465	0.0837	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	1	0.1302	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	PPFIA1--ANO1	7	0	PPFIA1	2737	chr11:70118542:+	ANO1	62047	chr11:69999163:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0651	0	LOCAL_REARRANGEMENT:+:[81172],PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,ANO1->anoctamin_1,chr11:69924408-70035634:+	OUMS23_LARGE_INTESTINE	1	1	0.0651	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	7	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	12019	0	0	1	0.0465	0.0651	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	1	0.1116	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	H19--MT-ND2	6	2	H19	4377	chr11:2016982:-	MT-ND2	8802	chrM:5318:+	INCL_NON_REF_SPLICE	YES	7851	4590	0	0	0.0558	0.0186	H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OUMS23_LARGE_INTESTINE	0	0	0.0744	FALSE	0	0	0	3	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	11653	1926	0	0	0.0558	0.0186	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	0	0.0744	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	14	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	3	0	0.85	1	0.0279	0.1302	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	0.85	1	0.1581	FALSE	344	826	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-494M8.4--OVCH2	4	10	RP11-494M8.4	10901	chr11:7775931:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0.093	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	OUMS23_LARGE_INTESTINE	1	1	0.1302	FALSE	16	1	1	11	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	DNAJC25--UGCG	6	1	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	61	20	0.1	0.26	0.0558	0.0093	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	OUMS23_LARGE_INTESTINE	0.1	0.26	0.0651	TRUE	50	73	10	50	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	13	MT-ND4	2343	chrM:12102:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0.1209	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	1	1	0.1488	FALSE	209	205	15	279	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	CD27-AS1--NOP2	5	4	CD27-AS1	5052	chr12:6556127:-	NOP2	14854	chr12:6673112:-	ONLY_REF_SPLICE	YES	0	67	1	0.12	0.0465	0.0372	CD27-AS1->CD27_antisense_RNA_1,chr12:6548167-6560733:-,NOP2->NOP2_nucleolar_protein,chr12:6666029-6677857:-	OUMS23_LARGE_INTESTINE	0.12	1	0.0837	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	8	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	13031	0	0	1	0.0372	0.0744	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	1	0.1116	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	2	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	13390	2	0	0.78	0.0465	0.0186	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	0.78	0.0651	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	10	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2161	50	0.01	0.21	0.0279	0.093	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0.01	0.21	0.1209	FALSE	216	209	16	281	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-TA--MT-TC	3	10	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0.093	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OUMS23_LARGE_INTESTINE	1	1	0.1209	FALSE	462	80	0	856	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	5	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	12008	1595	0	0.01	0.0372	0.0465	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	0.01	0.0837	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND5--MT-CO3	4	5	MT-ND5	2607	chrM:13943:+	MT-CO3	6185	chrM:9579:+	INCL_NON_REF_SPLICE	YES	2426	14433	0	0	0.0372	0.0465	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OUMS23_LARGE_INTESTINE	0	0	0.0837	FALSE	0	15	2	18	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-TA--MT-TY	5	1	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0.0093	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OUMS23_LARGE_INTESTINE	1	1	0.0558	FALSE	13	214	14	42	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	CALM3--MT-ATP8	5	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	1	1	0.0465	FALSE	12	0	0	26	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	DOT1L--SCAMP4	5	0	DOT1L	2161	chr19:2180755:+	SCAMP4	45023	chr19:1918126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0465	0	DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+,SCAMP4->Oncogene{Bushman},chr19:1905213-1926016:+,secretory_carrier_membrane_protein_4	OUMS23_LARGE_INTESTINE	1	1	0.0465	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0.0372	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	1	1	0.0744	FALSE	344	821	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MTATP6P1--MT-ND1	5	0	MTATP6P1	1123	chr1:569198:+	MT-ND1	5174	chrM:3799:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	OUMS23_LARGE_INTESTINE	1	1	0.0465	FALSE	16	0	0	13	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	PAK4--MT-ND4L	5	0	PAK4	12918	chr19:39669187:+	MT-ND4L	20189	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	1	1	0.0465	FALSE	0	0	0	7	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	7	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	12049	0	0	1	0.0279	0.0651	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	1	0.093	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	2	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	13358	0	0	1	0.0372	0.0186	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	1	0.0558	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	6	MT-ND4	1783	chrM:11542:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12065	50	0	0.15	0.0279	0.0558	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	0.15	0.0837	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	2	MT-ND4	1572	chrM:11331:+	MT-ATP8	5534	chrM:8521:+	INCL_NON_REF_SPLICE	YES	13628	1948	0	0	0.0372	0.0186	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	0	0.0558	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	6	MT-ND4	1779	chrM:11538:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11949	4	0	0.69	0.0279	0.0558	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	0.69	0.0837	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	12979	0	0	1	0.0372	0.0186	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	1	0.0558	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	5	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	11701	0	0	1	0.0279	0.0465	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	1	0.0744	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	1	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	9914	0	0	1	0.0372	0.0093	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	1	0.0465	FALSE	230	197	14	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-266E6.3--LINC00457	4	1	RP11-266E6.3	1183	chr13:35245137:-	LINC00457	7915	chr13:35009781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0.0093	NEIGHBORS_OVERLAP:-:-:[94756],RP11-266E6.3->chr13:35120066-35245319:-,LINC00457->chr13:35009587-35214822:-,long_intergenic_non-protein_coding_RNA_457	OUMS23_LARGE_INTESTINE	1	1	0.0465	FALSE	0	0	0	2	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	EML2--FBXO46	3	4	EML2	14248	chr19:46129963:-	FBXO46	34563	chr19:46216831:-	ONLY_REF_SPLICE	YES	33	4	0.17	0.64	0.0279	0.0372	LOCAL_REARRANGEMENT:-:[65000],EML2->chr19:46110252-46148887:-,echinoderm_microtubule_associated_protein_like_2,FBXO46->F-box_protein_46,chr19:46213887-46234162:-	OUMS23_LARGE_INTESTINE	0.17	0.64	0.0651	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	0	MT-ND4	1003	chrM:10762:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	1	1	0.0372	FALSE	230	189	14	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	1	1	0.0372	FALSE	230	198	14	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OUMS23_LARGE_INTESTINE	1	1	0.0372	FALSE	499	1288	110	792	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OUMS23_LARGE_INTESTINE	1	1	0.0372	FALSE	292	1546	117	613	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	SAMD5--SASH1	4	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	OUMS23_LARGE_INTESTINE	1	1	0.0372	TRUE	53	396	64	110	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	SMN2--SERF1B	4	0	SMN2	1244	chr5:69345593:+	SERF1B	17486	chr5:69328142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	LOCAL_REARRANGEMENT:+:[6410],SMN2->chr5:69345350-69374349:+,survival_of_motor_neuron_2,_centromeric,SERF1B->chr5:69321074-69338940:+,small_EDRK-rich_factor_1B_(centromeric)	OUMS23_LARGE_INTESTINE	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1478	chrM:11237:+	MT-ATP8	5425	chrM:8412:+	INCL_NON_REF_SPLICE	YES	13025	0	0	1	0.0279	0.0279	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	1	0.0558	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	12932	0	0	1	0.0279	0.0279	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	1	0.0558	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	14714	798	0	0.01	0.0279	0.0279	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	0.01	0.0558	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND5--MT-CO3	3	3	MT-ND5	2356	chrM:13692:+	MT-CO3	6188	chrM:9582:+	INCL_NON_REF_SPLICE	YES	2534	14283	0	0	0.0279	0.0279	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OUMS23_LARGE_INTESTINE	0	0	0.0558	FALSE	0	15	2	18	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-476K15.1--CTD-2015H3.2	3	3	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0279	0.0279	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	OUMS23_LARGE_INTESTINE	0.86	1	0.0558	FALSE	0	46	0	73	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	2	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	12985	0	0	1	0.0279	0.0186	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	1	0.0465	FALSE	231	217	16	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND5--MT-CO3	3	2	MT-ND5	2303	chrM:13639:+	MT-CO3	6178	chrM:9572:+	INCL_NON_REF_SPLICE	YES	2617	14621	0	0	0.0279	0.0186	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OUMS23_LARGE_INTESTINE	0	0	0.0465	FALSE	0	15	2	18	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-296O14.3--TNFSF4	3	2	RP11-296O14.3	5625	chr1:173387589:-	TNFSF4	9411	chr1:173176324:-	INCL_NON_REF_SPLICE	YES	6	0	0.45	1	0.0279	0.0186	RP11-296O14.3->chr1:173386932-173430501:-,TNFSF4->chr1:173152873-173176452:-,tumor_necrosis_factor_superfamily_member_4	OUMS23_LARGE_INTESTINE	0.45	1	0.0465	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	TPT1--H19	3	2	TPT1	1646	chr13:45914860:-	H19	9940	chr11:2018917:-	INCL_NON_REF_SPLICE	YES	6095	446	0	0.01	0.0279	0.0186	TPT1->chr13:45911008-45915505:-,tumor_protein,_translationally-controlled_1,H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-	OUMS23_LARGE_INTESTINE	0	0.01	0.0465	FALSE	0	0	0	1	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	ALDOA--MT-CO3	3	1	ALDOA	11901	chr16:30081673:+	MT-CO3	15101	chrM:9301:+	INCL_NON_REF_SPLICE	NO	0	10	1	0.29	0.0279	0.0093	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OUMS23_LARGE_INTESTINE	0.29	1	0.0372	FALSE	0	0	0	3	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	BLMH--NF1	3	1	BLMH	6463	chr17:28612406:-	NF1	59781	chr17:29652838:+	ONLY_REF_SPLICE	YES	89	16	0.04	0.2	0.0279	0.0093	BLMH->bleomycin_hydrolase,chr17:28575218-28619074:-,NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1	OUMS23_LARGE_INTESTINE	0.04	0.2	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	FTH1--ACTB	3	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	4555	0	0	1	0.0279	0.0093	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	OUMS23_LARGE_INTESTINE	0	1	0.0372	FALSE	1	0	0	97	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	IMMP2L--AC003088.1	3	1	IMMP2L	4976	chr7:111127294:-	AC003088.1	19914	chr7:110165618:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0279	0.0093	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	OUMS23_LARGE_INTESTINE	0.5	1	0.0372	TRUE	0	2	0	2	2	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	13114	1595	0	0	0.0279	0.0093	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	0	0	0.0372	FALSE	231	205	14	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-TA--MT-TY	3	1	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0.0093	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OUMS23_LARGE_INTESTINE	1	1	0.0372	FALSE	13	214	14	42	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MTATP6P1--MT-ND1	3	1	MTATP6P1	1303	chr1:569378:+	MT-ND1	4682	chrM:3307:+	INCL_NON_REF_SPLICE	YES	1953	0	0	1	0.0279	0.0093	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	OUMS23_LARGE_INTESTINE	0	1	0.0372	FALSE	16	0	0	13	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MTATP6P1--MT-ND1	3	1	MTATP6P1	1477	chr1:569552:+	MT-ND1	5024	chrM:3649:+	INCL_NON_REF_SPLICE	YES	1077	9314	0	0	0.0279	0.0093	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	OUMS23_LARGE_INTESTINE	0	0	0.0372	FALSE	16	0	0	13	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	16	1	0.2	0.0279	0.0093	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	OUMS23_LARGE_INTESTINE	0.2	1	0.0372	TRUE	458	1351	185	561	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0.0465	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OUMS23_LARGE_INTESTINE	1	1	0.0651	FALSE	275	511	55	178	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	BSG--GNAS	3	0	BSG	2405	chr19:572701:+	GNAS	29302	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	OUMS23_LARGE_INTESTINE	1	1	0.0279	TRUE	0	1	1	2	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	FTH1--ACTB	3	0	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	OUMS23_LARGE_INTESTINE	1	1	0.0279	TRUE	1	0	0	97	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	1	1	0.0279	FALSE	231	204	14	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OUMS23_LARGE_INTESTINE	1	1	0.0279	FALSE	230	191	14	283	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OUMS23_LARGE_INTESTINE	1	1	0.0279	FALSE	344	821	44	306	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND5--MT-CO3	3	0	MT-ND5	2775	chrM:14111:+	MT-CO3	6466	chrM:9860:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OUMS23_LARGE_INTESTINE	1	1	0.0279	FALSE	0	15	2	17	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND5--MT-CO3	3	0	MT-ND5	1013	chrM:12349:+	MT-CO3	5967	chrM:9361:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OUMS23_LARGE_INTESTINE	1	1	0.0279	FALSE	0	7	0	9	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1046	chrM:14628:-	MT-TE	4575	chrM:14693:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OUMS23_LARGE_INTESTINE	1	1	0.0279	FALSE	499	1288	110	792	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OUMS23_LARGE_INTESTINE	1	1	0.0279	FALSE	499	1288	110	792	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	MTATP6P1--MT-ND1	3	0	MTATP6P1	1106	chr1:569181:+	MT-ND1	5099	chrM:3724:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	OUMS23_LARGE_INTESTINE	1	1	0.0279	FALSE	16	0	0	13	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-319G9.5--WWOX	3	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	OUMS23_LARGE_INTESTINE	1	1	0.0279	FALSE	154	425	28	76	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	ASAP1--FAM49B	2	3	ASAP1	12168	chr8:131226802:-	FAM49B	60144	chr8:130891717:-	ONLY_REF_SPLICE	YES	21	157	0.19	0.03	0.0186	0.0279	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	OUMS23_LARGE_INTESTINE	0.03	0.19	0.0465	FALSE	0	0	0	1	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	AL109763.2--TMPRSS15	2	1	AL109763.2	3701	chr21:20110242:-	TMPRSS15	13875	chr21:19770646:-	ONLY_REF_SPLICE	YES	23	0	0.12	1	0.0186	0.0093	NEIGHBORS[75386],AL109763.2->chr21:19933583-20132321:-,TMPRSS15->chr21:19641433-19858197:-,transmembrane_protease,_serine_15	OUMS23_LARGE_INTESTINE	0.12	1	0.0279	FALSE	0	3	0	3	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	CWC25--FBXO47	2	1	CWC25	7334	chr17:36965955:-	FBXO47	20947	chr17:37107942:-	ONLY_REF_SPLICE	YES	18	0	0.14	1	0.0186	0.0093	{Klijn_CCL:Colo-Rectal=1},CWC25->CWC25_spliceosome-associated_protein_homolog,chr17:36956687-36981734:-,FBXO47->F-box_protein_47,chr17:37092685-37123655:-	OUMS23_LARGE_INTESTINE	0.14	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-494M8.4--OVCH2	2	1	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	6	0	0.33	1	0.0186	0.0093	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	OUMS23_LARGE_INTESTINE	0.33	1	0.0279	FALSE	60	13	8	23	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0093	0.0465	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OUMS23_LARGE_INTESTINE	1	1	0.0558	FALSE	192	492	57	212	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	AL109763.2--TMPRSS15	2	0	AL109763.2	3701	chr21:20110242:-	TMPRSS15	18559	chr21:19744641:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	NEIGHBORS[75386],AL109763.2->chr21:19933583-20132321:-,TMPRSS15->chr21:19641433-19858197:-,transmembrane_protease,_serine_15	OUMS23_LARGE_INTESTINE	1	1	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	ASAP2--TONSL	2	0	ASAP2	1466	chr2:9347359:+	TONSL	46146	chr8:145657843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	HGNC_GENEFAM,ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,TONSL->chr8:145654165-145669827:-,tonsoku-like,_DNA_repair_protein	OUMS23_LARGE_INTESTINE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	FBXL5--RP11-484O2.1	2	0	FBXL5	16339	chr4:15613889:-	RP11-484O2.1	22958	chr4:15364147:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	FBXL5->F-box_and_leucine-rich_repeat_protein_5,chr4:15606162-15683302:-,RP11-484O2.1->chr4:15359765-15421656:-	OUMS23_LARGE_INTESTINE	1	1	0.0186	TRUE	1	6	0	5	2	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	GS1-179L18.1--GS1-278J22.2	2	0	GS1-179L18.1	2517	chr7:53847639:-	GS1-278J22.2	12820	chr7:53632362:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	NEIGHBORS[87260],GS1-179L18.1->chr7:53723202-53879624:-,GS1-278J22.2->chr7:53626907-53635942:-	OUMS23_LARGE_INTESTINE	1	1	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	PPFIA1--ANO1	2	0	PPFIA1	2737	chr11:70118542:+	ANO1	61440	chr11:69998556:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	LOCAL_REARRANGEMENT:+:[81172],PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,ANO1->anoctamin_1,chr11:69924408-70035634:+	OUMS23_LARGE_INTESTINE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	SNHG16--RCOR3	2	0	SNHG16	1092	chr17:74553939:+	RCOR3	29733	chr1:211486062:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,RCOR3->REST_corepressor_3,chr1:211431719-211489727:+	OUMS23_LARGE_INTESTINE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	UCK2--RP4-723E3.1	2	0	UCK2	3521	chr1:165860559:+	RP4-723E3.1	24730	chr20:51147427:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,RP4-723E3.1->chr20:50827184-51266970:+	OUMS23_LARGE_INTESTINE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	WWOX--RP11-319G9.5	2	0	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	OUMS23_LARGE_INTESTINE	1	1	0.0186	FALSE	33	33	2	19	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	KIAA1217--RNF17	1	3	KIAA1217	10097	chr10:24669996:+	RNF17	57519	chr13:25399757:+	ONLY_REF_SPLICE	YES	43	0	0.09	1	0.0093	0.0279	{Klijn_CCL:Colo-Rectal=1},KIAA1217->KIAA1217,chr10:23983675-24836772:+,RNF17->chr13:25338290-25454059:+,ring_finger_protein_17	OUMS23_LARGE_INTESTINE	0.09	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	RP11-476K15.1--CTD-2015H3.2	1	3	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0093	0.0279	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	OUMS23_LARGE_INTESTINE	0.8	1	0.0372	FALSE	0	46	0	73	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	SPIDR--XKR4	1	2	SPIDR	6576	chr8:48203726:+	XKR4	42978	chr8:56435840:+	ONLY_REF_SPLICE	NO	42	0	0.07	1	0.0093	0.0186	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,XKR4->XK_related_4,chr8:56014949-56454613:+	OUMS23_LARGE_INTESTINE	0.07	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	CHSY1--PCSK6	1	1	CHSY1	1796	chr15:101791342:-	PCSK6	35863	chr15:101866684:-	ONLY_REF_SPLICE	YES	1	12	0.67	0.14	0.0093	0.0093	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},LOCAL_REARRANGEMENT:-:[48681],CHSY1->chondroitin_sulfate_synthase_1,chr15:101715928-101792137:-,PCSK6->chr15:101840818-102065405:-,proprotein_convertase_subtilisin/kexin_type_6	OUMS23_LARGE_INTESTINE	0.14	0.67	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	DSCR4--KCNJ6	1	1	DSCR4	1233	chr21:39493222:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	26	0	0.07	1	0.0093	0.0093	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	OUMS23_LARGE_INTESTINE	0.07	1	0.0186	FALSE	0	24	0	27	0	FALSE	ACH-000296
OUMS23_LARGE_INTESTINE	IMMP2L--AC003088.1	1	1	IMMP2L	12890	chr7:110526649:-	AC003088.1	19914	chr7:110165618:-	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0093	0.0093	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	OUMS23_LARGE_INTESTINE	0.25	1	0.0186	TRUE	1	1	0	2	1	TRUE	ACH-000296
OUMS23_LARGE_INTESTINE	PAPOLA--AK7	1	1	PAPOLA	21705	chr14:97018959:+	AK7	38808	chr14:96887159:+	ONLY_REF_SPLICE	YES	196	0	0.01	1	0.0093	0.0093	LOCAL_REARRANGEMENT:+:[12006],PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	OUMS23_LARGE_INTESTINE	0.01	1	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000296
MDAMB157_BREAST	FAM65A--NUTF2	449	13	FAM65A	2823	chr16:67562817:+	NUTF2	20250	chr16:67899005:+	ONLY_REF_SPLICE	YES	0	40	1	0.92	5.4457	0.1577	FAM65A->chr16:67552321-67580691:+,family_with_sequence_similarity_65_member_A,NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2	MDAMB157_BREAST	0.92	1	5.6034	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	CTNNA1--MATR3	365	98	CTNNA1	17161	chr5:138163407:+	MATR3	58734	chr5:138650364:+	ONLY_REF_SPLICE	YES	1	287	1	0.62	4.4269	1.1886	GTEx&tcga_normals:1/3694=0.03%,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,MATR3->chr5:138609441-138667360:+,matrin_3	MDAMB157_BREAST	0.62	1	5.6155	TRUE	0	0	0	6	0	TRUE	ACH-000621
MDAMB157_BREAST	CREBBP--USP7	183	53	CREBBP	4785	chr16:3860604:-	USP7	50806	chr16:9024254:-	ONLY_REF_SPLICE	YES	61	4	0.79	0.98	2.2195	0.6428	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,USP7->Oncogene{Bushman},chr16:8985951-9058371:-,ubiquitin_specific_peptidase_7_(herpes_virus-associated)	MDAMB157_BREAST	0.79	0.98	2.8623	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	FAM65A--NUTF2	120	65	FAM65A	7176	chr16:67572453:+	NUTF2	20250	chr16:67899005:+	ONLY_REF_SPLICE	YES	10	40	0.95	0.82	1.4554	0.7884	FAM65A->chr16:67552321-67580691:+,family_with_sequence_similarity_65_member_A,NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2	MDAMB157_BREAST	0.82	0.95	2.2438	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	DMXL1--TNFAIP8	100	39	DMXL1	3678	chr5:118407351:+	TNFAIP8	68062	chr5:118728511:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.2129	0.473	NEIGHBORS[19554],DMXL1->Dmx_like_1,chr5:118373467-118584833:+,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	MDAMB157_BREAST	1	1	1.6859	FALSE	0	1	0	2	0	FALSE	ACH-000621
MDAMB157_BREAST	TC2N--FBLN5	87	31	TC2N	7430	chr14:92268598:-	FBLN5	30117	chr14:92361416:-	ONLY_REF_SPLICE	YES	28	48	0.81	0.71	1.0552	0.376	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[1876],TC2N->chr14:92246095-92333880:-,tandem_C2_domains,_nuclear,FBLN5->chr14:92335756-92414331:-,fibulin_5	MDAMB157_BREAST	0.71	0.81	1.4312	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	HIATL2--ZNF367	90	15	HIATL2	1322	chr9:99775541:-	ZNF367	15665	chr9:99160596:-	ONLY_REF_SPLICE	YES	14	1	0.88	0.99	1.0916	0.1819	HIATL2->chr9:99660348-99775862:-,ZNF367->chr9:99148223-99180611:-,zinc_finger_protein_367	MDAMB157_BREAST	0.88	0.99	1.2735	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	ZNF654--HMGB2	89	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0794	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MDAMB157_BREAST	1	1	1.0794	TRUE	0	0	0	518	0	FALSE	ACH-000621
MDAMB157_BREAST	MT-TA--MT-TC	75	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9096	0.097	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB157_BREAST	1	1	1.0066	FALSE	462	80	0	856	0	FALSE	ACH-000621
MDAMB157_BREAST	RAB1A--PELI1	72	16	RAB1A	1214	chr2:65357027:-	PELI1	15921	chr2:64335513:-	ONLY_REF_SPLICE	YES	790	35	0.1	0.72	0.8733	0.1941	RAB1A->Oncogene{Bushman},RAB1A,_member_RAS_oncogene_family,chr2:65297835-65357240:-,PELI1->chr2:64319786-64371588:-,pellino_E3_ubiquitin_protein_ligase_1	MDAMB157_BREAST	0.1	0.72	1.0674	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	CTNNA1--MATR3	44	110	CTNNA1	17161	chr5:138163407:+	MATR3	52013	chr5:138642928:+	ONLY_REF_SPLICE	YES	1	68	0.99	0.69	0.5337	1.3341	GTEx&tcga_normals:1/3694=0.03%,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,MATR3->chr5:138609441-138667360:+,matrin_3	MDAMB157_BREAST	0.69	0.99	1.8678	TRUE	0	1	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	PTK2--AGO2	60	23	PTK2	2092	chr8:142011224:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	17	0	0.83	1	0.7277	0.279	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	MDAMB157_BREAST	0.83	1	1.0067	FALSE	0	6	0	3	0	FALSE	ACH-000621
MDAMB157_BREAST	COL6A2--DIP2A	59	0	COL6A2	1077	chr21:47518087:+	DIP2A	39874	chr21:47959790:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.7156	0	COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,DIP2A->chr21:47878812-47989926:+,disco_interacting_protein_2_homolog_A	MDAMB157_BREAST	1	1	0.7156	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	KBTBD2--DPY19L1P1	51	20	KBTBD2	5562	chr7:32919047:-	DPY19L1P1	21734	chr7:32718742:-	ONLY_REF_SPLICE	YES	31	0	0.7	1	0.6186	0.2426	KBTBD2->chr7:32907784-32933743:-,kelch_repeat_and_BTB_domain_containing_2,DPY19L1P1->DPY19L1_pseudogene_1,chr7:32620561-32801399:-	MDAMB157_BREAST	0.7	1	0.8612	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	TIMM23B--LINC00843	42	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5094	0.1698	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MDAMB157_BREAST	1	1	0.6792	TRUE	508	994	45	981	0	FALSE	ACH-000621
MDAMB157_BREAST	FAM105B--RP11-583F2.1	32	9	FAM105B	3905	chr5:14678884:+	RP11-583F2.1	21259	chr17:62926836:+	ONLY_REF_SPLICE	YES	25	10	0.62	0.8	0.3881	0.1092	FAM105B->chr5:14664773-14699820:+,RP11-583F2.1->chr17:62923752-62930321:+	MDAMB157_BREAST	0.62	0.8	0.4973	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	TC2N--FBLN5	28	9	TC2N	5966	chr14:92278656:-	FBLN5	30117	chr14:92361416:-	ONLY_REF_SPLICE	YES	40	48	0.48	0.44	0.3396	0.1092	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[1876],TC2N->chr14:92246095-92333880:-,tandem_C2_domains,_nuclear,FBLN5->chr14:92335756-92414331:-,fibulin_5	MDAMB157_BREAST	0.44	0.48	0.4488	TRUE	0	2	0	1	1	TRUE	ACH-000621
MDAMB157_BREAST	MT-TA--MT-TC	28	6	MT-TA	1053	chrM:5603:-	MT-TC	4081	chrM:5815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3396	0.0728	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB157_BREAST	1	1	0.4124	FALSE	462	80	0	856	0	FALSE	ACH-000621
MDAMB157_BREAST	TIMM23--RP11-464F9.1	26	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	200	0	0.12	1	0.3153	0.0121	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MDAMB157_BREAST	0.12	1	0.3274	TRUE	519	3926	326	965	0	FALSE	ACH-000621
MDAMB157_BREAST	MT-TA--MT-TN	13	48	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1577	0.5822	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB157_BREAST	1	1	0.7399	FALSE	369	2501	205	193	0	FALSE	ACH-000621
MDAMB157_BREAST	MT-TA--MT-TN	24	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2911	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB157_BREAST	1	1	0.2911	FALSE	369	2501	205	193	0	FALSE	ACH-000621
MDAMB157_BREAST	SPIRE1--AC079466.1	19	12	SPIRE1	9453	chr18:12535475:-	AC079466.1	32539	chr19:29101167:+	ONLY_REF_SPLICE	YES	73	0	0.3	1	0.2304	0.1455	SPIRE1->chr18:12446511-12658133:-,spire_type_actin_nucleation_factor_1,AC079466.1->chr19:29097595-29106136:+	MDAMB157_BREAST	0.3	1	0.3759	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	CORO2B--NOX5	15	2	CORO2B	10418	chr15:69007650:+	NOX5	19431	chr15:69267068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1819	0.0243	CORO2B->Oncogene{Bushman},chr15:68871308-69020145:+,coronin_2B,NOX5->NADPH_oxidase,_EF-hand_calcium_binding_domain_5,chr15:69222864-69355083:+	MDAMB157_BREAST	1	1	0.2062	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	PTK2--AGO2	8	30	PTK2	5802	chr8:141958765:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	28	0	0.58	1	0.097	0.3639	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	MDAMB157_BREAST	0.58	1	0.4609	FALSE	0	0	0	2	0	FALSE	ACH-000621
MDAMB157_BREAST	MT-TA--MT-TN	7	32	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0849	0.3881	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB157_BREAST	1	1	0.473	FALSE	369	2501	205	193	0	FALSE	ACH-000621
MDAMB157_BREAST	RP1-34H18.1--NAV3	13	4	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1577	0.0485	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	MDAMB157_BREAST	1	1	0.2062	TRUE	254	575	65	124	0	FALSE	ACH-000621
MDAMB157_BREAST	MT-ND6--MT-TE	11	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1334	0.097	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB157_BREAST	1	1	0.2304	FALSE	499	1288	110	792	0	FALSE	ACH-000621
MDAMB157_BREAST	NRIP1--AF127936.7	12	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.47	1	0.1455	0.0485	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB157_BREAST	0.47	1	0.194	FALSE	125	705	46	456	0	FALSE	ACH-000621
MDAMB157_BREAST	RP11-96H19.1--RP11-446N19.1	12	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.1455	0.0121	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB157_BREAST	0.93	1	0.1576	FALSE	515	4851	409	746	0	FALSE	ACH-000621
MDAMB157_BREAST	FAM105B--RP11-583F2.1	9	12	FAM105B	3905	chr5:14678884:+	RP11-583F2.1	20782	chr17:62926359:+	ONLY_REF_SPLICE	YES	25	11	0.46	0.66	0.1092	0.1455	FAM105B->chr5:14664773-14699820:+,RP11-583F2.1->chr17:62923752-62930321:+	MDAMB157_BREAST	0.46	0.66	0.2547	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	FAM105B--RP11-583F2.1	8	14	FAM105B	3905	chr5:14678884:+	RP11-583F2.1	18617	chr17:62923754:+	INCL_NON_REF_SPLICE	YES	25	0	0.47	1	0.097	0.1698	FAM105B->chr5:14664773-14699820:+,RP11-583F2.1->chr17:62923752-62930321:+	MDAMB157_BREAST	0.47	1	0.2668	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	MT-TA--MT-TN	7	17	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0849	0.2062	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB157_BREAST	1	1	0.2911	FALSE	369	2501	205	193	0	FALSE	ACH-000621
MDAMB157_BREAST	PRR16--CTD-2334D19.1	10	4	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	223	0	0.06	1	0.1213	0.0485	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	MDAMB157_BREAST	0.06	1	0.1698	FALSE	56	216	12	147	0	FALSE	ACH-000621
MDAMB157_BREAST	DMXL1--TNFAIP8	1	39	DMXL1	3678	chr5:118407351:+	TNFAIP8	61560	chr5:118651880:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0.473	NEIGHBORS[19554],DMXL1->Dmx_like_1,chr5:118373467-118584833:+,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	MDAMB157_BREAST	1	1	0.4851	FALSE	0	0	0	1	0	FALSE	ACH-000621
MDAMB157_BREAST	PTK2--AGO2	4	26	PTK2	2337	chr8:142010979:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	26	0	0.54	1	0.0485	0.3153	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	MDAMB157_BREAST	0.54	1	0.3638	FALSE	0	6	0	3	0	FALSE	ACH-000621
MDAMB157_BREAST	MT-ND6--MT-TE	10	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1213	0.0121	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB157_BREAST	1	1	0.1334	FALSE	499	1288	110	792	0	FALSE	ACH-000621
MDAMB157_BREAST	MT-TA--MT-TN	10	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1213	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB157_BREAST	1	1	0.1213	FALSE	369	2501	205	193	0	FALSE	ACH-000621
MDAMB157_BREAST	NRIP1--AF127936.7	10	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1213	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB157_BREAST	1	1	0.1213	FALSE	292	1546	117	613	0	FALSE	ACH-000621
MDAMB157_BREAST	RSU1--AC006115.3	8	5	RSU1	6309	chr10:16794538:-	AC006115.3	22640	chr19:57301296:+	ONLY_REF_SPLICE	YES	249	0	0.05	1	0.097	0.0606	RSU1->Ras_suppressor_protein_1,chr10:16632610-16859527:-,AC006115.3->chr19:57202054-57311014:+	MDAMB157_BREAST	0.05	1	0.1576	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	PTK2--AGO2	2	28	PTK2	3651	chr8:141993941:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	26	0	0.54	1	0.0243	0.3396	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	MDAMB157_BREAST	0.54	1	0.3639	FALSE	0	0	0	2	0	FALSE	ACH-000621
MDAMB157_BREAST	MT-TA--MT-TN	5	14	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0.1698	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB157_BREAST	1	1	0.2304	FALSE	369	2501	205	193	0	FALSE	ACH-000621
MDAMB157_BREAST	ACAT1--RAB39A	6	7	ACAT1	7198	chr11:108005969:+	RAB39A	21958	chr11:107832672:+	ONLY_REF_SPLICE	YES	230	0	0.05	1	0.0728	0.0849	ACAT1->acetyl-CoA_acetyltransferase_1,chr11:107992243-108018503:+,RAB39A->RAB39A,_member_RAS_oncogene_family,chr11:107799229-107834208:+	MDAMB157_BREAST	0.05	1	0.1577	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	PTK2--AGO2	1	27	PTK2	3415	chr8:141994177:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	27	0	0.51	1	0.0121	0.3275	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	MDAMB157_BREAST	0.51	1	0.3396	FALSE	0	0	0	2	0	FALSE	ACH-000621
MDAMB157_BREAST	ZNF527--ZNF507	7	1	ZNF527	8855	chr19:37880792:+	ZNF507	31136	chr19:32877614:+	INCL_NON_REF_SPLICE	YES	33	3	0.2	0.73	0.0849	0.0121	HGNC_GENEFAM,PROTCLUST,ZNF527->chr19:37861963-37883968:+,zinc_finger_protein_527,ZNF507->chr19:32836500-32878573:+,zinc_finger_protein_507	MDAMB157_BREAST	0.2	0.73	0.097	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	COL6A2--DIP2A	7	0	COL6A2	1077	chr21:47518087:+	DIP2A	39071	chr21:47958987:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0849	0	COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,DIP2A->chr21:47878812-47989926:+,disco_interacting_protein_2_homolog_A	MDAMB157_BREAST	1	1	0.0849	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	FAM65A--NUTF2	1	23	FAM65A	7176	chr16:67572453:+	NUTF2	21378	chr16:67902243:+	ONLY_REF_SPLICE	NO	10	358	0.71	0.06	0.0121	0.279	FAM65A->chr16:67552321-67580691:+,family_with_sequence_similarity_65_member_A,NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2	MDAMB157_BREAST	0.06	0.71	0.2911	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	ELP3--RP11-597M17.1	6	2	ELP3	18782	chr8:28016150:+	RP11-597M17.1	28835	chr8:27766507:+	ONLY_REF_SPLICE	YES	50	0	0.14	1	0.0728	0.0243	ELP3->chr8:27947190-28048673:+,elongator_acetyltransferase_complex_subunit_3,RP11-597M17.1->chr8:27761998-27767827:+	MDAMB157_BREAST	0.14	1	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	MT-ND6--MT-TE	6	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0728	0.0121	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB157_BREAST	1	1	0.0849	FALSE	499	1288	110	792	0	FALSE	ACH-000621
MDAMB157_BREAST	MT-TA--MT-TN	6	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0728	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB157_BREAST	1	1	0.0728	FALSE	369	2501	205	193	0	FALSE	ACH-000621
MDAMB157_BREAST	FAM65A--NUTF2	2	15	FAM65A	3996	chr16:67563990:+	NUTF2	20250	chr16:67899005:+	ONLY_REF_SPLICE	YES	2	40	0.89	0.3	0.0243	0.1819	FAM65A->chr16:67552321-67580691:+,family_with_sequence_similarity_65_member_A,NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2	MDAMB157_BREAST	0.3	0.89	0.2062	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	FAM65A--NUTF2	2	15	FAM65A	3768	chr16:67563762:+	NUTF2	20250	chr16:67899005:+	ONLY_REF_SPLICE	NO	6	40	0.74	0.3	0.0243	0.1819	FAM65A->chr16:67552321-67580691:+,family_with_sequence_similarity_65_member_A,NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2	MDAMB157_BREAST	0.3	0.74	0.2062	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	MT-ND6--MT-TE	4	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0.0606	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB157_BREAST	1	1	0.1091	FALSE	499	1288	110	792	0	FALSE	ACH-000621
MDAMB157_BREAST	CTC-786C10.1--GSE1	5	0	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0606	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MDAMB157_BREAST	1	1	0.0606	TRUE	2	3	0	21	0	FALSE	ACH-000621
MDAMB157_BREAST	KBTBD2--DPY19L1P1	4	4	KBTBD2	5296	chr7:32919313:-	DPY19L1P1	21734	chr7:32718742:-	ONLY_REF_SPLICE	YES	45	0	0.15	1	0.0485	0.0485	KBTBD2->chr7:32907784-32933743:-,kelch_repeat_and_BTB_domain_containing_2,DPY19L1P1->DPY19L1_pseudogene_1,chr7:32620561-32801399:-	MDAMB157_BREAST	0.15	1	0.097	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	KBTBD2--DPY19L1P1	5	0	KBTBD2	3495	chr7:32931148:-	DPY19L1P1	21734	chr7:32718742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0606	0	KBTBD2->chr7:32907784-32933743:-,kelch_repeat_and_BTB_domain_containing_2,DPY19L1P1->DPY19L1_pseudogene_1,chr7:32620561-32801399:-	MDAMB157_BREAST	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB157_BREAST	1	1	0.0606	FALSE	231	204	14	283	0	FALSE	ACH-000621
MDAMB157_BREAST	NRIP1--AF127936.7	3	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.3	1	0.0364	0.097	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB157_BREAST	0.3	1	0.1334	FALSE	164	806	69	479	0	FALSE	ACH-000621
MDAMB157_BREAST	PTK2--AGO2	3	8	PTK2	2092	chr8:142011224:-	AGO2	70087	chr8:141583031:-	ONLY_REF_SPLICE	YES	17	20	0.39	0.35	0.0364	0.097	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	MDAMB157_BREAST	0.35	0.39	0.1334	FALSE	0	0	0	1	0	FALSE	ACH-000621
MDAMB157_BREAST	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0485	0.0364	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB157_BREAST	1	1	0.0849	FALSE	407	2205	196	549	0	FALSE	ACH-000621
MDAMB157_BREAST	MT-ND6--MT-TE	3	6	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.0728	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB157_BREAST	1	1	0.1092	FALSE	499	1288	110	792	0	FALSE	ACH-000621
MDAMB157_BREAST	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0485	0.0243	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB157_BREAST	0.86	1	0.0728	FALSE	467	2173	244	435	0	FALSE	ACH-000621
MDAMB157_BREAST	DNAJC25--UGCG	4	1	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	280	53	0.02	0.09	0.0485	0.0121	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	MDAMB157_BREAST	0.02	0.09	0.0606	TRUE	50	73	10	50	0	FALSE	ACH-000621
MDAMB157_BREAST	FAM65A--NUTF2	3	5	FAM65A	2823	chr16:67562817:+	NUTF2	21378	chr16:67902243:+	ONLY_REF_SPLICE	YES	0	358	1	0.02	0.0364	0.0606	FAM65A->chr16:67552321-67580691:+,family_with_sequence_similarity_65_member_A,NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2	MDAMB157_BREAST	0.02	1	0.097	TRUE	0	0	0	1	0	FALSE	ACH-000621
MDAMB157_BREAST	CPQ--SDC2	4	0	CPQ	1176	chr8:97657630:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0485	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	MDAMB157_BREAST	1	1	0.0485	TRUE	1	37	5	9	9	TRUE	ACH-000621
MDAMB157_BREAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB157_BREAST	1	1	0.0485	FALSE	231	205	14	283	0	FALSE	ACH-000621
MDAMB157_BREAST	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB157_BREAST	1	1	0.0485	FALSE	462	80	0	856	0	FALSE	ACH-000621
MDAMB157_BREAST	MT-TA--MT-TN	4	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB157_BREAST	1	1	0.0485	FALSE	369	2501	205	193	0	FALSE	ACH-000621
MDAMB157_BREAST	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB157_BREAST	1	1	0.0485	FALSE	369	2501	205	193	0	FALSE	ACH-000621
MDAMB157_BREAST	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MDAMB157_BREAST	1	1	0.0485	TRUE	0	0	0	434	0	FALSE	ACH-000621
MDAMB157_BREAST	FAM105B--RP11-583F2.1	3	2	FAM105B	2391	chr5:14673827:+	RP11-583F2.1	20782	chr17:62926359:+	ONLY_REF_SPLICE	YES	13	11	0.28	0.31	0.0364	0.0243	FAM105B->chr5:14664773-14699820:+,RP11-583F2.1->chr17:62923752-62930321:+	MDAMB157_BREAST	0.28	0.31	0.0607	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	DMXL1--TNFAIP8	3	1	DMXL1	3279	chr5:118406952:+	TNFAIP8	68062	chr5:118728511:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0364	0.0121	NEIGHBORS[19554],DMXL1->Dmx_like_1,chr5:118373467-118584833:+,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	MDAMB157_BREAST	0.8	1	0.0485	FALSE	0	1	0	2	0	FALSE	ACH-000621
MDAMB157_BREAST	PLXDC1--TAF13	3	1	PLXDC1	27520	chr17:37222840:-	TAF13	38540	chr1:109605627:-	INCL_NON_REF_SPLICE	YES	2	51	0.67	0.07	0.0364	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	MDAMB157_BREAST	0.07	0.67	0.0485	TRUE	7	10	0	216	0	FALSE	ACH-000621
MDAMB157_BREAST	C10orf112--PLXDC2	3	0	C10orf112	32754	chr10:20079115:+	PLXDC2	37923	chr10:20290704:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	NEIGHBORS[25838],C10orf112->chr10:19492779-20079330:+,PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2	MDAMB157_BREAST	1	1	0.0364	FALSE	73	74	3	10	0	FALSE	ACH-000621
MDAMB157_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1261	chrM:14413:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB157_BREAST	1	1	0.0364	FALSE	499	1288	110	792	0	FALSE	ACH-000621
MDAMB157_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB157_BREAST	1	1	0.0364	FALSE	499	1288	110	792	0	FALSE	ACH-000621
MDAMB157_BREAST	RP11-97E7.1--FOXRED1	3	0	RP11-97E7.1	2311	chr4:172474370:-	FOXRED1	8526	chr11:126142474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	GTEx_FI:{Brain=[count:5=pct:0.8],Spleen=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Liver=[count:1=pct:0.8]},RP11-97E7.1->chr4:172474151-172485418:-,FOXRED1->FAD-dependent_oxidoreductase_domain_containing_1,chr11:126138950-126148026:+	MDAMB157_BREAST	1	1	0.0364	TRUE	5	3	0	5	0	FALSE	ACH-000621
MDAMB157_BREAST	ACAT1--RAB39A	2	3	ACAT1	6272	chr11:108005043:+	RAB39A	21958	chr11:107832672:+	ONLY_REF_SPLICE	YES	156	0	0.03	1	0.0243	0.0364	ACAT1->acetyl-CoA_acetyltransferase_1,chr11:107992243-108018503:+,RAB39A->RAB39A,_member_RAS_oncogene_family,chr11:107799229-107834208:+	MDAMB157_BREAST	0.03	1	0.0607	TRUE	0	0	0	1	0	FALSE	ACH-000621
MDAMB157_BREAST	CREBBP--USP7	2	3	CREBBP	1895	chr16:3929833:-	USP7	50806	chr16:9024254:-	ONLY_REF_SPLICE	YES	16	4	0.24	0.56	0.0243	0.0364	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,USP7->Oncogene{Bushman},chr16:8985951-9058371:-,ubiquitin_specific_peptidase_7_(herpes_virus-associated)	MDAMB157_BREAST	0.24	0.56	0.0607	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	BAZ2B--MARCH7	2	2	BAZ2B	1451	chr2:160472753:-	MARCH7	64626	chr2:160585520:+	ONLY_REF_SPLICE	YES	2	14	0.67	0.22	0.0243	0.0243	GTEx_v2:{count=4;pct=0.05%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1},LOCAL_INVERSION:-:+:[95797],BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-,MARCH7->chr2:160569000-160627538:+,membrane_associated_ring-CH-type_finger_7	MDAMB157_BREAST	0.22	0.67	0.0486	TRUE	1	1	0	4	1	TRUE	ACH-000621
MDAMB157_BREAST	BAZ2B--MARCH7	2	2	BAZ2B	2299	chr2:160471905:-	MARCH7	64626	chr2:160585520:+	ONLY_REF_SPLICE	YES	3	14	0.57	0.22	0.0243	0.0243	GTEx_v2:{count=4;pct=0.05%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1},LOCAL_INVERSION:-:+:[95797],BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-,MARCH7->chr2:160569000-160627538:+,membrane_associated_ring-CH-type_finger_7	MDAMB157_BREAST	0.22	0.57	0.0486	TRUE	1	1	0	4	1	TRUE	ACH-000621
MDAMB157_BREAST	FAM105B--RP11-583F2.1	2	2	FAM105B	2391	chr5:14673827:+	RP11-583F2.1	21259	chr17:62926836:+	ONLY_REF_SPLICE	YES	13	10	0.24	0.29	0.0243	0.0243	FAM105B->chr5:14664773-14699820:+,RP11-583F2.1->chr17:62923752-62930321:+	MDAMB157_BREAST	0.24	0.29	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	PTK2--AGO2	1	6	PTK2	2337	chr8:142010979:-	AGO2	71462	chr8:141572733:-	ONLY_REF_SPLICE	YES	26	45	0.21	0.13	0.0121	0.0728	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	MDAMB157_BREAST	0.13	0.21	0.0849	FALSE	0	0	0	1	0	FALSE	ACH-000621
MDAMB157_BREAST	CTC-786C10.1--GSE1	2	1	CTC-786C10.1	1532	chr16:85205413:+	GSE1	8143	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0.0121	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MDAMB157_BREAST	1	1	0.0364	TRUE	5	1	0	10	0	FALSE	ACH-000621
MDAMB157_BREAST	RP1-34H18.1--RP11-781A6.1	2	1	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0.0121	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	MDAMB157_BREAST	1	1	0.0364	TRUE	94	160	11	37	0	FALSE	ACH-000621
MDAMB157_BREAST	RP11-1L12.3--SLC5A12	2	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0243	0.0121	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	MDAMB157_BREAST	0.43	1	0.0364	TRUE	3	101	0	60	0	FALSE	ACH-000621
MDAMB157_BREAST	TC2N--FBLN5	2	1	TC2N	3418	chr14:92302715:-	FBLN5	30117	chr14:92361416:-	ONLY_REF_SPLICE	YES	5	48	0.38	0.06	0.0243	0.0121	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[1876],TC2N->chr14:92246095-92333880:-,tandem_C2_domains,_nuclear,FBLN5->chr14:92335756-92414331:-,fibulin_5	MDAMB157_BREAST	0.06	0.38	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	CASC10--C9orf3	2	0	CASC10	1513	chr10:21785679:-	C9orf3	45398	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	CASC10->cancer_susceptibility_candidate_10,chr10:21781587-21786191:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	MDAMB157_BREAST	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	COL6A2--DIP2A	2	0	COL6A2	1077	chr21:47518087:+	DIP2A	40989	chr21:47961669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,DIP2A->chr21:47878812-47989926:+,disco_interacting_protein_2_homolog_A	MDAMB157_BREAST	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	CXXC5--UBE2D2	2	0	CXXC5	2711	chr5:139028594:+	UBE2D2	18534	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	LOCAL_REARRANGEMENT:+:[18866],CXXC5->CXXC_finger_protein_5,chr5:139026884-139063467:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	MDAMB157_BREAST	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	DVL3--SNX27	2	0	DVL3	6289	chr3:183884053:+	SNX27	24739	chr1:151655832:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	DVL3->chr3:183873176-183891398:+,dishevelled_segment_polarity_protein_3,SNX27->chr1:151584541-151671567:+,sorting_nexin_family_member_27	MDAMB157_BREAST	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000621
MDAMB157_BREAST	METAP1--EIF4E	2	0	METAP1	1248	chr4:99917018:+	EIF4E	28557	chr4:99823133:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	{Klijn_CCL:Sarcomatoid=1,Stomach=1},LOCAL_INVERSION:+:-:[64983],METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1,EIF4E->Oncogene{Bushman},chr4:99792835-99851788:-,eukaryotic_translation_initiation_factor_4E	MDAMB157_BREAST	1	1	0.0243	TRUE	0	1	0	7	1	TRUE	ACH-000621
MDAMB157_BREAST	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB157_BREAST	1	1	0.0243	FALSE	25	145	6	90	0	FALSE	ACH-000621
MDAMB157_BREAST	PRR16--CTD-2334D19.1	1	4	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	NO	223	0	0.02	1	0.0121	0.0485	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	MDAMB157_BREAST	0.02	1	0.0606	FALSE	1	13	0	24	0	FALSE	ACH-000621
MDAMB157_BREAST	PRR16--CTD-2334D19.1	1	4	PRR16	3559	chr5:119816988:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	NO	251	0	0.02	1	0.0121	0.0485	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	MDAMB157_BREAST	0.02	1	0.0606	FALSE	1	5	0	12	0	FALSE	ACH-000621
MDAMB157_BREAST	PTK2--AGO2	2	0	PTK2	1203	chr8:142012113:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	MDAMB157_BREAST	1	1	0.0243	FALSE	0	6	0	3	0	FALSE	ACH-000621
MDAMB157_BREAST	CPSF6--C9orf3	1	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	NO	113	376	0.02	0.01	0.0121	0.0121	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	MDAMB157_BREAST	0.01	0.02	0.0242	FALSE	53	99	2	44	0	FALSE	ACH-000621
MDAMB157_BREAST	KBTBD2--DPY19L1P1	1	1	KBTBD2	5562	chr7:32919047:-	DPY19L1P1	29177	chr7:32663051:-	ONLY_REF_SPLICE	NO	31	30	0.06	0.06	0.0121	0.0121	KBTBD2->chr7:32907784-32933743:-,kelch_repeat_and_BTB_domain_containing_2,DPY19L1P1->DPY19L1_pseudogene_1,chr7:32620561-32801399:-	MDAMB157_BREAST	0.06	0.06	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000621
MDAMB157_BREAST	NOC4L--FBRSL1	1	1	NOC4L	5448	chr12:132633440:+	FBRSL1	23658	chr12:133144067:+	ONLY_REF_SPLICE	YES	33	29	0.06	0.06	0.0121	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	MDAMB157_BREAST	0.06	0.06	0.0242	TRUE	16	9	0	6	0	FALSE	ACH-000621
MDAMB157_BREAST	PHF20--RBM39	1	1	PHF20	4583	chr20:34389527:+	RBM39	42942	chr20:34320057:-	ONLY_REF_SPLICE	YES	98	449	0.02	0	0.0121	0.0121	GTEx_v2:{count=2;pct=0.02%;dist=Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1},{Klijn_CCL:Stomach=1},LOCAL_INVERSION:+:-:[29662],PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	MDAMB157_BREAST	0	0.02	0.0242	FALSE	0	0	0	2	0	FALSE	ACH-000621
MDAMB157_BREAST	SPDL1--SRP9	1	1	SPDL1	14276	chr5:169028629:+	SRP9	19498	chr1:225965637:+	ONLY_REF_SPLICE	NO	230	59	0.01	0.03	0.0121	0.0121	SPDL1->chr5:169010638-169031782:+,spindle_apparatus_coiled-coil_protein_1,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	MDAMB157_BREAST	0.01	0.03	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000621
AGS_STOMACH	SLC7A6--TANGO6	379	302	SLC7A6	3192	chr16:68300624:+	TANGO6	31795	chr16:68934337:+	ONLY_REF_SPLICE	YES	147	5	0.82	0.99	3.241	2.5826	SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog	AGS_STOMACH	0.82	0.99	5.8236	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	TMEM87B--MERTK	136	80	TMEM87B	9523	chr2:112843681:+	MERTK	30658	chr2:112722768:+	ONLY_REF_SPLICE	YES	268	1	0.45	1	1.163	0.6841	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[25662],TMEM87B->chr2:112812800-112876895:+,transmembrane_protein_87B,MERTK->MER_proto-oncogene,_tyrosine_kinase,Oncogene{Bushman},chr2:112656056-112787138:+	AGS_STOMACH	0.45	1	1.8471	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	TIMM23B--LINC00843	121	72	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0347	0.6157	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	AGS_STOMACH	1	1	1.6504	TRUE	508	994	45	981	0	FALSE	ACH-000880
AGS_STOMACH	KANSL1--ARL17B	75	80	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	87	100	0.64	0.61	0.6414	0.6841	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	AGS_STOMACH	0.61	0.64	1.3255	TRUE	181	1564	124	196	0	FALSE	ACH-000880
AGS_STOMACH	TIMM23--RP11-464F9.1	66	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	618	10	0.1	0.88	0.5644	0.0513	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	AGS_STOMACH	0.1	0.88	0.6157	TRUE	519	3926	326	965	0	FALSE	ACH-000880
AGS_STOMACH	MT-ND6--MT-TE	66	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5644	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AGS_STOMACH	1	1	0.5644	FALSE	499	1288	110	792	0	FALSE	ACH-000880
AGS_STOMACH	MT-ND6--MT-TE	57	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4874	0.0086	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AGS_STOMACH	1	1	0.496	FALSE	499	1288	110	792	0	FALSE	ACH-000880
AGS_STOMACH	MT-ND6--MT-ND5	53	5	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	2338	1	0.02	0.4532	0.0428	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	AGS_STOMACH	0.02	1	0.496	FALSE	101	855	57	72	0	FALSE	ACH-000880
AGS_STOMACH	PLXDC1--TAF13	38	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.325	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	AGS_STOMACH	1	1	0.325	TRUE	7	10	0	216	0	FALSE	ACH-000880
AGS_STOMACH	CDKAL1--AC016629.3	30	14	CDKAL1	6416	chr6:20739846:+	AC016629.3	23608	chr19:59109183:-	ONLY_REF_SPLICE	YES	59	0	0.43	1	0.2565	0.1197	CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+,AC016629.3->chr19:59105263-59110722:-	AGS_STOMACH	0.43	1	0.3762	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	NPM1P24--SET	31	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2651	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	AGS_STOMACH	1	1	0.2651	TRUE	0	0	0	434	0	FALSE	ACH-000880
AGS_STOMACH	MT-TA--MT-TC	30	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2565	0.0086	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	AGS_STOMACH	1	1	0.2651	FALSE	462	80	0	856	0	FALSE	ACH-000880
AGS_STOMACH	MT-ND6--MT-TE	24	2	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.84	1	0.2052	0.0171	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AGS_STOMACH	0.84	1	0.2223	FALSE	499	1288	110	792	0	FALSE	ACH-000880
AGS_STOMACH	RP11-344E13.3--UBBP4	16	34	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	0	1	1	0.98	0.1368	0.2908	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	AGS_STOMACH	0.98	1	0.4276	TRUE	23	13	0	54	0	FALSE	ACH-000880
AGS_STOMACH	MT-ND6--MT-TE	24	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2052	0.0086	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AGS_STOMACH	1	1	0.2138	FALSE	499	1288	110	792	0	FALSE	ACH-000880
AGS_STOMACH	C15orf57--CBX3	17	24	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	68	41	0.38	0.5	0.1454	0.2052	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	AGS_STOMACH	0.38	0.5	0.3506	TRUE	267	562	48	632	0	FALSE	ACH-000880
AGS_STOMACH	MT-TA--MT-TC	20	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.171	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	AGS_STOMACH	1	1	0.171	FALSE	462	80	0	856	0	FALSE	ACH-000880
AGS_STOMACH	ZNF654--HMGB2	20	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.171	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	AGS_STOMACH	1	1	0.171	TRUE	0	0	0	518	0	FALSE	ACH-000880
AGS_STOMACH	PUS7--SRPK2	16	12	PUS7	11872	chr7:105111135:-	SRPK2	26644	chr7:104947018:-	ONLY_REF_SPLICE	YES	134	17	0.17	0.62	0.1368	0.1026	NEIGHBORS[40353],PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative),SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-	AGS_STOMACH	0.17	0.62	0.2394	FALSE	0	0	0	1	0	FALSE	ACH-000880
AGS_STOMACH	NIPA2--POLA1	17	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1454	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	AGS_STOMACH	1	1	0.1454	TRUE	46	1352	75	139	0	FALSE	ACH-000880
AGS_STOMACH	HSPBP1--GRK5	15	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1283	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	AGS_STOMACH	1	1	0.1283	TRUE	1	39	0	134	39	FALSE	ACH-000880
AGS_STOMACH	PUS7--SRPK2	12	3	PUS7	11799	chr7:105111208:-	SRPK2	32274	chr7:104844232:-	ONLY_REF_SPLICE	YES	92	17	0.14	0.47	0.1026	0.0257	NEIGHBORS[40353],PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative),SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-	AGS_STOMACH	0.14	0.47	0.1283	FALSE	0	0	0	1	0	FALSE	ACH-000880
AGS_STOMACH	C15orf57--CBX3	9	14	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	66	41	0.26	0.36	0.077	0.1197	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	AGS_STOMACH	0.26	0.36	0.1967	TRUE	267	562	48	632	0	FALSE	ACH-000880
AGS_STOMACH	MT-CO3--MT-ATP6	12	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1026	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	AGS_STOMACH	1	1	0.1026	FALSE	189	492	56	216	0	FALSE	ACH-000880
AGS_STOMACH	SLC7A6--TANGO6	11	1	SLC7A6	1047	chr16:68298479:+	TANGO6	31795	chr16:68934337:+	ONLY_REF_SPLICE	YES	0	5	1	0.71	0.0941	0.0086	SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog	AGS_STOMACH	0.71	1	0.1027	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	MT-ND6--MT-TE	9	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.077	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AGS_STOMACH	1	1	0.077	FALSE	499	1288	110	792	0	FALSE	ACH-000880
AGS_STOMACH	SLC7A6--TANGO6	1	32	SLC7A6	3192	chr16:68300624:+	TANGO6	34085	chr16:68941346:+	ONLY_REF_SPLICE	YES	147	259	0.18	0.11	0.0086	0.2736	SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog	AGS_STOMACH	0.11	0.18	0.2822	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	ZDHHC16--PGAM1	7	7	ZDHHC16	1184	chr10:99206110:+	PGAM1	16129	chr10:99190136:+	ONLY_REF_SPLICE	YES	90	2977	0.13	0	0.0599	0.0599	LOCAL_REARRANGEMENT:+:[12729],ZDHHC16->chr10:99205927-99217127:+,zinc_finger_DHHC-type_containing_16,PGAM1->chr10:99185917-99193198:+,phosphoglycerate_mutase_1	AGS_STOMACH	0	0.13	0.1198	TRUE	0	0	0	1	0	FALSE	ACH-000880
AGS_STOMACH	MT-CO3--MT-ATP6	7	5	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	7	9	0.63	0.57	0.0599	0.0428	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	AGS_STOMACH	0.57	0.63	0.1027	FALSE	189	492	56	216	0	FALSE	ACH-000880
AGS_STOMACH	MT-CO3--MT-ATP6	7	4	MT-CO3	1220	chrM:9426:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	10	6	0.52	0.65	0.0599	0.0342	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	AGS_STOMACH	0.52	0.65	0.0941	FALSE	189	492	56	216	0	FALSE	ACH-000880
AGS_STOMACH	PUS7--SRPK2	6	8	PUS7	11799	chr7:105111208:-	SRPK2	26644	chr7:104947018:-	ONLY_REF_SPLICE	YES	92	17	0.13	0.45	0.0513	0.0684	NEIGHBORS[40353],PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative),SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-	AGS_STOMACH	0.13	0.45	0.1197	FALSE	0	0	0	1	0	FALSE	ACH-000880
AGS_STOMACH	MT-CO3--MT-ATP6	7	2	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.6	0.0599	0.0171	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	AGS_STOMACH	0.6	1	0.077	FALSE	189	492	56	216	0	FALSE	ACH-000880
AGS_STOMACH	MT-ND6--MT-TE	7	2	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.0599	0.0171	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AGS_STOMACH	0.69	1	0.077	FALSE	499	1288	110	792	0	FALSE	ACH-000880
AGS_STOMACH	ZNF654--HMGB2	7	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0599	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	AGS_STOMACH	1	1	0.0599	TRUE	0	0	0	518	0	FALSE	ACH-000880
AGS_STOMACH	C15orf57--CBX3	3	15	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	66	41	0.21	0.31	0.0257	0.1283	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	AGS_STOMACH	0.21	0.31	0.154	TRUE	267	562	48	632	0	FALSE	ACH-000880
AGS_STOMACH	GPHN--MPP5	4	6	GPHN	19568	chr14:67490392:+	MPP5	47996	chr14:67768106:+	ONLY_REF_SPLICE	YES	16	73	0.38	0.12	0.0342	0.0513	NEIGHBORS[59306],GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5	AGS_STOMACH	0.12	0.38	0.0855	FALSE	0	0	0	1	0	FALSE	ACH-000880
AGS_STOMACH	MT-ND5--MT-ND6	5	2	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.88	0.0428	0.0171	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	AGS_STOMACH	0.88	1	0.0599	FALSE	26	124	4	93	0	FALSE	ACH-000880
AGS_STOMACH	MT-CO3--MT-ATP6	3	8	MT-CO3	1656	chrM:9862:+	MT-ATP6	5222	chrM:8964:+	INCL_NON_REF_SPLICE	NO	0	19	1	0.37	0.0257	0.0684	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	AGS_STOMACH	0.37	1	0.0941	FALSE	189	492	56	216	0	FALSE	ACH-000880
AGS_STOMACH	MT-ND5--MT-ND6	5	0	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0428	0	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	AGS_STOMACH	1	1	0.0428	FALSE	26	124	4	93	0	FALSE	ACH-000880
AGS_STOMACH	TMEM87B--MERTK	1	16	TMEM87B	8023	chr2:112838695:+	MERTK	30658	chr2:112722768:+	ONLY_REF_SPLICE	YES	373	1	0.04	0.94	0.0086	0.1368	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[25662],TMEM87B->chr2:112812800-112876895:+,transmembrane_protein_87B,MERTK->MER_proto-oncogene,_tyrosine_kinase,Oncogene{Bushman},chr2:112656056-112787138:+	AGS_STOMACH	0.04	0.94	0.1454	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	MT-ND6--MT-ND5	3	5	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	2295	1	0	0.0257	0.0428	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	AGS_STOMACH	0	1	0.0685	FALSE	101	855	57	72	0	FALSE	ACH-000880
AGS_STOMACH	HSPBP1--GRK5	4	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	AGS_STOMACH	1	1	0.0342	TRUE	1	39	0	134	39	FALSE	ACH-000880
AGS_STOMACH	MT-CO3--MT-ATP6	3	4	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	6	0.88	0.54	0.0257	0.0342	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	AGS_STOMACH	0.54	0.88	0.0599	FALSE	189	492	56	216	0	FALSE	ACH-000880
AGS_STOMACH	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AGS_STOMACH	1	1	0.0342	FALSE	499	1288	110	792	0	FALSE	ACH-000880
AGS_STOMACH	MT-ND6--MT-ND5	3	3	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	NO	4	2286	0.6	0	0.0257	0.0257	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	AGS_STOMACH	0	0.6	0.0514	FALSE	101	855	57	72	0	FALSE	ACH-000880
AGS_STOMACH	MT-CO3--MT-ATP6	3	2	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.45	0.0257	0.0171	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	AGS_STOMACH	0.45	1	0.0428	FALSE	189	492	56	216	0	FALSE	ACH-000880
AGS_STOMACH	MT-CO3--MT-ATP6	3	2	MT-CO3	1099	chrM:9305:+	MT-ATP6	5328	chrM:9070:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.5	0.0257	0.0171	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	AGS_STOMACH	0.5	1	0.0428	FALSE	189	492	56	216	0	FALSE	ACH-000880
AGS_STOMACH	MT-CO3--MT-ATP6	3	2	MT-CO3	1085	chrM:9291:+	MT-ATP6	5314	chrM:9056:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.45	0.0257	0.0171	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	AGS_STOMACH	0.45	1	0.0428	FALSE	189	492	56	216	0	FALSE	ACH-000880
AGS_STOMACH	MT-CO3--MT-ATP6	3	2	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.45	0.0257	0.0171	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	AGS_STOMACH	0.45	1	0.0428	FALSE	189	492	56	216	0	FALSE	ACH-000880
AGS_STOMACH	MT-ND6--MT-TE	3	2	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	5	0	0.5	1	0.0257	0.0171	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AGS_STOMACH	0.5	1	0.0428	FALSE	499	1288	110	792	0	FALSE	ACH-000880
AGS_STOMACH	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	AGS_STOMACH	1	1	0.0257	FALSE	189	492	56	216	0	FALSE	ACH-000880
AGS_STOMACH	MT-CO3--MT-ATP6	3	0	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	AGS_STOMACH	1	1	0.0257	FALSE	189	492	56	216	0	FALSE	ACH-000880
AGS_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AGS_STOMACH	1	1	0.0257	FALSE	499	1288	110	792	0	FALSE	ACH-000880
AGS_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1333	chrM:14341:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AGS_STOMACH	1	1	0.0257	FALSE	499	1288	110	792	0	FALSE	ACH-000880
AGS_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AGS_STOMACH	1	1	0.0257	FALSE	499	1288	110	792	0	FALSE	ACH-000880
AGS_STOMACH	MT-TA--MT-TC	3	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	AGS_STOMACH	1	1	0.0257	FALSE	462	80	0	856	0	FALSE	ACH-000880
AGS_STOMACH	KANSL1--ARL17B	2	3	KANSL1	9741	chr17:44171926:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	87	10	0.05	0.33	0.0171	0.0257	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	AGS_STOMACH	0.05	0.33	0.0428	TRUE	51	25	1	17	0	FALSE	ACH-000880
AGS_STOMACH	PUS7--SRPK2	2	3	PUS7	10711	chr7:105112579:-	SRPK2	26644	chr7:104947018:-	ONLY_REF_SPLICE	YES	99	17	0.05	0.23	0.0171	0.0257	NEIGHBORS[40353],PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative),SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-	AGS_STOMACH	0.05	0.23	0.0428	FALSE	0	0	0	1	0	FALSE	ACH-000880
AGS_STOMACH	HS2ST1--SEP15	2	2	HS2ST1	8180	chr1:87558352:+	SEP15	28222	chr1:87346408:-	ONLY_REF_SPLICE	YES	851	2019	0	0	0.0171	0.0171	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	AGS_STOMACH	0	0	0.0342	FALSE	0	0	0	1	0	FALSE	ACH-000880
AGS_STOMACH	CPSF6--CHMP1A	2	1	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	356	560	0.01	0.01	0.0171	0.0086	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	AGS_STOMACH	0.01	0.01	0.0257	FALSE	95	74	6	34	0	FALSE	ACH-000880
AGS_STOMACH	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	99	0.6	0.03	0.0171	0.0086	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	AGS_STOMACH	0.03	0.6	0.0257	FALSE	16	356	14	466	0	FALSE	ACH-000880
AGS_STOMACH	ARID4A--MRPL14	2	0	ARID4A	3587	chr14:58768408:+	MRPL14	33070	chr6:44084366:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	ARID4A->AT-rich_interaction_domain_4A,Oncogene{Bushman},chr14:58765103-58840605:+,MRPL14->chr6:44081194-44095194:-,mitochondrial_ribosomal_protein_L14	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	ATP11A--HSPA4	2	0	ATP11A	16226	chr13:113481205:+	HSPA4	61930	chr5:132432853:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,HSPA4->chr5:132387654-132442141:+,heat_shock_protein_family_A_(Hsp70)_member_4	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	C9orf3--ZADH2	2	0	C9orf3	33832	chr9:97843062:+	ZADH2	44580	chr18:72914295:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	CEP170B--WHSC1	2	0	CEP170B	2366	chr14:105334892:+	WHSC1	27741	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	CEP170B->centrosomal_protein_170B,chr14:105331617-105363107:+,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	DTNB--MARC1	2	0	DTNB	7359	chr2:25851040:-	MARC1	49472	chr1:220986634:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	DTNB->chr2:25600067-25896503:-,dystrobrevin_beta,MARC1->chr1:220960101-220987735:+,mitochondrial_amidoxime_reducing_component_1	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	EIF3M--TEAD1	2	0	EIF3M	1132	chr11:32605475:+	TEAD1	32441	chr11:12946459:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	GPX8--AP3B1	2	0	GPX8	1279	chr5:54456224:+	AP3B1	15558	chr5:77512061:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},GPX8->chr5:54455946-54462899:+,glutathione_peroxidase_8_(putative),AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	JKAMP--DAG1	2	0	JKAMP	1151	chr14:59951311:+	DAG1	21879	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	JKAMP->JNK1/MAPK8-associated_membrane_protein,chr14:59951161-59972128:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	STAU1--CANX	2	0	STAU1	8754	chr20:47768119:-	CANX	28212	chr5:179132680:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1,CANX->calnexin,chr5:179105629-179157926:+	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	VPS13A--GNAQ	2	0	VPS13A	1452	chr9:79792720:+	GNAQ	86859	chr9:80537261:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx&tcga_normals:1/3694=0.03%,VPS13A->chr9:79792269-80036457:+,vacuolar_protein_sorting_13_homolog_A,GNAQ->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_q,Oncogene{Bushman},OncomapV4_panel,chr9:80331003-80646374:-	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	ZCCHC10--ATP8A1	2	0	ZCCHC10	5614	chr5:132342451:-	ATP8A1	41838	chr4:42467093:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	ZCCHC10->chr5:132332677-132362296:-,zinc_finger_CCHC-type_containing_10,ATP8A1->ATPase_phospholipid_transporting_8A1,chr4:42410390-42659122:-	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	ZNF638--MOB1A	2	0	ZNF638	2342	chr2:71559005:+	MOB1A	52732	chr2:74399879:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638,MOB1A->MOB_kinase_activator_1A,chr2:74379655-74406025:-	AGS_STOMACH	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	HS2ST1--SEP15	1	2	HS2ST1	1513	chr1:87380843:+	SEP15	28222	chr1:87346408:-	ONLY_REF_SPLICE	NO	661	2019	0	0	0.0086	0.0171	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	AGS_STOMACH	0	0	0.0257	FALSE	0	3	0	8	1	FALSE	ACH-000880
AGS_STOMACH	SLC7A6--TANGO6	1	2	SLC7A6	1212	chr16:68298644:+	TANGO6	31795	chr16:68934337:+	ONLY_REF_SPLICE	YES	3	5	0.5	0.38	0.0086	0.0171	SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog	AGS_STOMACH	0.38	0.5	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000880
AGS_STOMACH	AXIN1--VPS72	1	1	AXIN1	6640	chr16:354304:-	VPS72	21235	chr1:151158426:-	ONLY_REF_SPLICE	YES	109	207	0.02	0.01	0.0086	0.0086	AXIN1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},axin_1,chr16:337440-402673:-,VPS72->chr1:151142463-151167797:-,vacuolar_protein_sorting_72_homolog	AGS_STOMACH	0.01	0.02	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000880
AGS_STOMACH	CD46--PCCA	1	1	CD46	6873	chr1:207940540:+	PCCA	43230	chr13:100982815:+	ONLY_REF_SPLICE	YES	747	67	0	0.03	0.0086	0.0086	CD46->CD46_molecule,Oncogene{Bushman},chr1:207925402-207968858:+,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	AGS_STOMACH	0	0.03	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000880
AGS_STOMACH	CTDSPL2--CASC4	1	1	CTDSPL2	1539	chr15:44719970:+	CASC4	38385	chr15:44671888:+	ONLY_REF_SPLICE	YES	161	309	0.01	0.01	0.0086	0.0086	LOCAL_REARRANGEMENT:+:[11476],CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+	AGS_STOMACH	0.01	0.01	0.0172	FALSE	0	0	0	4	0	FALSE	ACH-000880
AGS_STOMACH	FLG-AS1--S100A10	1	1	FLG-AS1	1296	chr1:152140896:+	S100A10	25745	chr1:151958727:-	ONLY_REF_SPLICE	YES	61	434	0.03	0	0.0086	0.0086	FLG-AS1->FLG_antisense_RNA_1,chr1:152140601-152339163:+,S100A10->Oncogene{Bushman},S100_calcium_binding_protein_A10,chr1:151955391-151966866:-	AGS_STOMACH	0	0.03	0.0172	FALSE	1	0	0	1	0	FALSE	ACH-000880
AGS_STOMACH	GPR107--SPPL2A	1	1	GPR107	8997	chr9:132853262:+	SPPL2A	43591	chr15:51017520:-	ONLY_REF_SPLICE	YES	248	619	0.01	0	0.0086	0.0086	GPR107->G_protein-coupled_receptor_107,chr9:132815705-132902448:+,SPPL2A->chr15:50999506-51058005:-,signal_peptide_peptidase_like_2A	AGS_STOMACH	0	0.01	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000880
AGS_STOMACH	HEG1--UMPS	1	1	HEG1	16990	chr3:124709631:-	UMPS	31942	chr3:124453940:+	ONLY_REF_SPLICE	YES	200	301	0.01	0.01	0.0086	0.0086	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},HEG1->chr3:124684554-124774802:-,heart_development_protein_with_EGF_like_domains_1,UMPS->chr3:124449213-124464040:+,uridine_monophosphate_synthetase	AGS_STOMACH	0.01	0.01	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000880
AGS_STOMACH	HSPA5--HSP90AA1	1	1	HSPA5	2159	chr9:128002451:-	HSP90AA1	17887	chr14:102548781:-	ONLY_REF_SPLICE	YES	3824	6626	0	0	0.0086	0.0086	HSPA5->Oncogene{Bushman},chr9:127997132-128003609:-,heat_shock_protein_family_A_(Hsp70)_member_5,HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1	AGS_STOMACH	0	0	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000880
AGS_STOMACH	MYOF--DONSON	1	1	MYOF	1211	chr10:95241864:-	DONSON	65925	chr21:34955972:-	ONLY_REF_SPLICE	YES	756	208	0	0.01	0.0086	0.0086	MYOF->chr10:95066186-95242074:-,myoferlin,DONSON->chr21:34931848-34961014:-,downstream_neighbor_of_SON	AGS_STOMACH	0	0.01	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000880
AGS_STOMACH	ZNF708--HSP90B1	1	1	ZNF708	1216	chr19:21512012:-	HSP90B1	19139	chr12:104332118:+	ONLY_REF_SPLICE	YES	43	4626	0.04	0	0.0086	0.0086	ZNF708->chr19:21473962-21512227:-,zinc_finger_protein_708,HSP90B1->Oncogene{Bushman},chr12:104323885-104347423:+,heat_shock_protein_90kDa_beta_family_member_1	AGS_STOMACH	0	0.04	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000880
NCIH2004RT_SOFT_TISSUE	TIMM23B--LINC00843	95	39	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.111	0.4561	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2004RT_SOFT_TISSUE	1	1	1.5671	TRUE	508	994	45	981	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	TIMM23--RP11-464F9.1	61	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	449	7	0.13	0.9	0.7134	0.0468	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2004RT_SOFT_TISSUE	0.13	0.9	0.7602	TRUE	519	3926	326	965	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-TA--MT-TC	50	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5847	0.0585	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2004RT_SOFT_TISSUE	1	1	0.6432	FALSE	462	80	0	856	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	23	29	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	5	0.91	0.91	0.269	0.3391	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2004RT_SOFT_TISSUE	0.91	0.91	0.6081	FALSE	515	4851	409	746	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-ND5--MT-ATP8	23	15	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5964	6	0.01	0.86	0.269	0.1754	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2004RT_SOFT_TISSUE	0.01	0.86	0.4444	FALSE	43	37	8	105	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	17	37	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.92	1	0.1988	0.4327	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2004RT_SOFT_TISSUE	0.92	1	0.6315	FALSE	407	2205	196	549	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	NPM1P24--SET	20	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	58	1634	0.27	0.01	0.2339	0.0117	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2004RT_SOFT_TISSUE	0.01	0.27	0.2456	TRUE	0	0	0	434	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	PLXDC1--TAF13	20	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2339	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH2004RT_SOFT_TISSUE	1	1	0.2339	TRUE	7	10	0	216	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-ND5--MT-ATP8	11	26	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	10	0	0.79	1	0.1286	0.3041	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2004RT_SOFT_TISSUE	0.79	1	0.4327	FALSE	43	37	8	105	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	9	34	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	5	0.9	0.9	0.1053	0.3976	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2004RT_SOFT_TISSUE	0.9	0.9	0.5029	FALSE	467	2173	244	435	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1988	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2004RT_SOFT_TISSUE	1	1	0.1988	TRUE	0	0	0	518	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-ND5--MT-ATP8	12	17	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	10	491	0.74	0.06	0.1403	0.1988	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2004RT_SOFT_TISSUE	0.06	0.74	0.3391	FALSE	43	37	8	105	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	OR51S1--TP53I11	16	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1871	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH2004RT_SOFT_TISSUE	1	1	0.1871	TRUE	402	216	10	229	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-ND6--MT-TE	14	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	6	0	0.78	1	0.1637	0.0819	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2004RT_SOFT_TISSUE	0.78	1	0.2456	FALSE	499	1288	110	792	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	RP11-680G10.1--GSE1	13	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	12	1	0.61	0.152	0.0702	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2004RT_SOFT_TISSUE	0.61	1	0.2222	TRUE	458	1351	185	561	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	2	43	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.9	1	0.0234	0.5029	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2004RT_SOFT_TISSUE	0.9	1	0.5263	FALSE	192	492	57	212	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-ND5--MT-ATP8	9	12	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9137	66	0	0.24	0.1053	0.1403	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2004RT_SOFT_TISSUE	0	0.24	0.2456	FALSE	43	37	8	105	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	2	37	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	5	0	0.89	1	0.0234	0.4327	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2004RT_SOFT_TISSUE	0.89	1	0.4561	FALSE	275	511	55	178	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-CO3--MT-ATP6	8	12	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	13	0.87	0.61	0.0936	0.1403	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2004RT_SOFT_TISSUE	0.61	0.87	0.2339	FALSE	189	492	56	216	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	C15orf57--CBX3	8	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	126	35	0.12	0.33	0.0936	0.1053	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2004RT_SOFT_TISSUE	0.12	0.33	0.1989	TRUE	267	562	48	632	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-ND5--MT-ATP8	3	29	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0.3391	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2004RT_SOFT_TISSUE	1	1	0.3742	FALSE	43	37	8	105	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	RP11-141M1.3--STARD13	8	8	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	7	12	0.7	0.57	0.0936	0.0936	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NCIH2004RT_SOFT_TISSUE	0.57	0.7	0.1872	FALSE	141	264	50	91	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-TA--MT-TC	8	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0936	0.0702	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2004RT_SOFT_TISSUE	1	1	0.1638	FALSE	462	80	0	856	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-ND5--MT-ATP8	3	21	MT-ND5	2321	chrM:13657:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	4852	0	0	1	0.0351	0.2456	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2004RT_SOFT_TISSUE	0	1	0.2807	FALSE	43	37	8	105	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-CO3--MT-ATP6	5	12	MT-CO3	1138	chrM:9344:+	MT-ATP6	5065	chrM:8807:+	INCL_NON_REF_SPLICE	YES	3	7	0.85	0.71	0.0585	0.1403	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2004RT_SOFT_TISSUE	0.71	0.85	0.1988	FALSE	189	492	56	216	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-ND6--MT-TE	8	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0936	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2004RT_SOFT_TISSUE	1	1	0.0936	FALSE	499	1288	110	792	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	RP11-141M1.3--STARD13	6	8	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	4	12	0.78	0.54	0.0702	0.0936	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NCIH2004RT_SOFT_TISSUE	0.54	0.78	0.1638	FALSE	49	120	16	70	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	RP11-680G10.1--GSE1	7	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	63	1	0.15	0.0819	0.0468	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2004RT_SOFT_TISSUE	0.15	1	0.1287	TRUE	465	1949	224	605	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	RP11-123O10.4--GRIP1	7	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0819	0.0234	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2004RT_SOFT_TISSUE	1	1	0.1053	FALSE	416	2512	207	587	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-TA--MT-TC	6	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0702	0.0585	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2004RT_SOFT_TISSUE	1	1	0.1287	FALSE	462	80	0	856	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-CO3--MT-ATP6	4	12	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	13	0.84	0.55	0.0468	0.1403	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2004RT_SOFT_TISSUE	0.55	0.84	0.1871	FALSE	189	492	56	216	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-CO3--MT-ATP6	4	11	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	8	1	0.65	0.0468	0.1286	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2004RT_SOFT_TISSUE	0.65	1	0.1754	FALSE	189	492	56	216	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-CO3--MT-ATP6	4	10	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	11	1	0.56	0.0468	0.1169	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2004RT_SOFT_TISSUE	0.56	1	0.1637	FALSE	189	492	56	216	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-CO3--MT-ATP6	3	13	MT-CO3	1113	chrM:9319:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0351	0.152	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2004RT_SOFT_TISSUE	0.94	1	0.1871	FALSE	189	492	56	216	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	RP11-275N1.1--NEBL	5	5	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	9	0	0.53	1	0.0585	0.0585	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	NCIH2004RT_SOFT_TISSUE	0.53	1	0.117	TRUE	0	2	0	25	2	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-CO3--MT-ATP6	3	12	MT-CO3	1138	chrM:9344:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	3	19	0.83	0.44	0.0351	0.1403	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2004RT_SOFT_TISSUE	0.44	0.83	0.1754	FALSE	189	492	56	216	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-CO3--MT-ATP6	3	12	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	3	54	0.83	0.22	0.0351	0.1403	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2004RT_SOFT_TISSUE	0.22	0.83	0.1754	FALSE	189	492	56	216	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-CO3--MT-ATP6	5	4	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.82	0.0585	0.0468	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2004RT_SOFT_TISSUE	0.82	1	0.1053	FALSE	189	492	56	216	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	RP11-166D19.1--DNM3OS	6	0	RP11-166D19.1	5868	chr11:121971082:-	DNM3OS	18442	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0702	0	GTEx_FI:{Ovary=[count:4=pct:7.5],Blood_Vessel=[count:3=pct:0.8],Thyroid=[count:2=pct:1.1],Uterus=[count:1=pct:2.3],Esophagus=[count:1=pct:0.2]},RP11-166D19.1->chr11:121899063-121987031:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	NCIH2004RT_SOFT_TISSUE	1	1	0.0702	TRUE	11	20	1	11	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	C15orf57--CBX3	4	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	125	37	0.08	0.23	0.0468	0.0819	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2004RT_SOFT_TISSUE	0.08	0.23	0.1287	TRUE	267	562	48	632	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	CALM3--MT-ND4L	5	3	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2371	0	0	1	0.0585	0.0351	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2004RT_SOFT_TISSUE	0	1	0.0936	FALSE	1	1	0	107	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-CO3--MT-ATP6	5	1	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	3	1	0.67	0.86	0.0585	0.0117	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2004RT_SOFT_TISSUE	0.67	0.86	0.0702	FALSE	189	492	56	216	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-CO3--MT-ATP6	5	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0585	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2004RT_SOFT_TISSUE	1	1	0.0585	FALSE	189	492	56	216	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-CO3--MT-ATP6	3	8	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	0	18	1	0.38	0.0351	0.0936	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2004RT_SOFT_TISSUE	0.38	1	0.1287	FALSE	189	492	56	216	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-ND6--MT-TE	4	4	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0.0468	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2004RT_SOFT_TISSUE	1	1	0.0936	FALSE	499	1288	110	792	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-ND6--MT-TE	4	4	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0.0468	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2004RT_SOFT_TISSUE	1	1	0.0936	FALSE	499	1288	110	792	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0585	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2004RT_SOFT_TISSUE	1	1	0.0585	FALSE	462	80	0	856	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	WTAPP1--RUVBL1	5	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0585	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	NCIH2004RT_SOFT_TISSUE	1	1	0.0585	TRUE	9	252	6	66	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH2004RT_SOFT_TISSUE	1	1	0.0468	TRUE	22	156	2	142	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-CO3--MT-ATP6	3	3	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.75	0.0351	0.0351	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2004RT_SOFT_TISSUE	0.75	1	0.0702	FALSE	189	492	56	216	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-CO3--MT-ATP6	3	3	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.86	0.0351	0.0351	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2004RT_SOFT_TISSUE	0.86	1	0.0702	FALSE	189	492	56	216	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-CO3--MT-ATP6	3	2	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	7	1	0.42	0.83	0.0351	0.0234	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2004RT_SOFT_TISSUE	0.42	0.83	0.0585	FALSE	189	492	56	216	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	XXbac-BPG252P9.9--TUBBP2	3	1	XXbac-BPG252P9.9	1049	chr6:30691606:-	TUBBP2	4883	chr13:41959210:-	INCL_NON_REF_SPLICE	YES	1685	0	0	1	0.0351	0.0117	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH2004RT_SOFT_TISSUE	0	1	0.0468	FALSE	0	1	0	48	1	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	XXbac-BPG252P9.9--TUBBP2	3	1	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	NO	3098	0	0	1	0.0351	0.0117	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH2004RT_SOFT_TISSUE	0	1	0.0468	FALSE	0	1	0	48	1	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	XXbac-BPG252P9.9--TUBBP2	3	1	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	1266	0	0	1	0.0351	0.0117	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH2004RT_SOFT_TISSUE	0	1	0.0468	FALSE	0	1	0	48	1	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	XXbac-BPG252P9.9--TUBBP2	3	1	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	NO	3024	0	0	1	0.0351	0.0117	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH2004RT_SOFT_TISSUE	0	1	0.0468	FALSE	0	1	0	48	1	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	CNPPD1--MT-ND4L	3	0	CNPPD1	6268	chr2:220037561:-	MT-ND4L	10212	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2004RT_SOFT_TISSUE	1	1	0.0351	FALSE	0	0	0	1	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2004RT_SOFT_TISSUE	1	1	0.0351	FALSE	499	1288	110	792	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	PGRMC1--MT-ND4L	3	0	PGRMC1	1304	chrX:118370519:+	MT-ND4L	7913	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	PGRMC1->chrX:118370216-118378429:+,progesterone_receptor_membrane_component_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2004RT_SOFT_TISSUE	1	1	0.0351	FALSE	0	0	0	1	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	SOGA2--PWP1	3	0	SOGA2	29185	chr18:8825508:+	PWP1	50543	chr12:108106065:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	SOGA2->chr18:8705659-8832776:+,PWP1->PWP1_homolog,_endonuclein,chr12:108079509-108106944:+	NCIH2004RT_SOFT_TISSUE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000533
NCIH2004RT_SOFT_TISSUE	PPP1R12C--CNN2	2	1	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	156	1318	0.02	0	0.0234	0.0117	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	NCIH2004RT_SOFT_TISSUE	0	0.02	0.0351	FALSE	35	34	3	30	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	C17orf76-AS1--WDR43	2	0	C17orf76-AS1	1593	chr17:16342728:+	WDR43	19849	chr2:29136935:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	C17orf76-AS1->chr17:16342136-16381992:+,WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+	NCIH2004RT_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000533
NCIH2004RT_SOFT_TISSUE	RBM14--CCS	2	0	RBM14	1476	chr11:66384528:+	CCS	14358	chr11:66366587:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[10563],RBM14->RNA_binding_motif_protein_14,chr11:66384053-66394818:+,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	NCIH2004RT_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000533
NCIH2004RT_SOFT_TISSUE	RP11-141M1.3--STARD13	1	4	RP11-141M1.3	11074	chr13:33933602:-	STARD13	26750	chr13:33716510:-	ONLY_REF_SPLICE	YES	4	16	0.56	0.24	0.0117	0.0468	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NCIH2004RT_SOFT_TISSUE	0.24	0.56	0.0585	FALSE	0	1	0	6	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	RP11-275N1.1--NEBL	2	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	NCIH2004RT_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	21	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	SNX5--DSTN	2	0	SNX5	1606	chr20:17949018:-	DSTN	24446	chr20:17581383:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5,DSTN->chr20:17550508-17590564:+,destrin,_actin_depolymerizing_factor	NCIH2004RT_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	2	0	TRUE	ACH-000533
NCIH2004RT_SOFT_TISSUE	TAF13--PLP2	2	0	TAF13	2016	chr1:109617609:-	PLP2	11633	chrX:49030682:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-,PLP2->chrX:49028273-49031588:+,proteolipid_protein_2_(colonic_epithelium-enriched)	NCIH2004RT_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000533
NCIH2004RT_SOFT_TISSUE	RP11-120D5.1--MID1	1	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	2	0.67	0.67	0.0117	0.0351	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2004RT_SOFT_TISSUE	0.67	0.67	0.0468	FALSE	16	356	14	466	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	CTC-228N24.2--CTC-228N24.3	1	1	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	NO	0	60	1	0.03	0.0117	0.0117	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	NCIH2004RT_SOFT_TISSUE	0.03	1	0.0234	TRUE	0	1	0	12	1	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	PYROXD2--ILF3	1	1	PYROXD2	16051	chr10:100144704:-	ILF3	30391	chr19:10792669:+	ONLY_REF_SPLICE	YES	140	822	0.01	0	0.0117	0.0117	PYROXD2->chr10:100143322-100174941:-,pyridine_nucleotide-disulphide_oxidoreductase_domain_2,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	NCIH2004RT_SOFT_TISSUE	0	0.01	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000533
NCIH2004RT_SOFT_TISSUE	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0117	0.0117	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2004RT_SOFT_TISSUE	1	1	0.0234	TRUE	62	24	1	171	0	FALSE	ACH-000533
FTC133_THYROID	TIMM23B--LINC00843	112	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1655	0.1769	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	FTC133_THYROID	1	1	1.3424	TRUE	508	994	45	981	0	FALSE	ACH-000903
FTC133_THYROID	WI2-1896O14.1--RP11-353N4.1	66	10	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6868	0.1041	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	FTC133_THYROID	1	1	0.7909	TRUE	361	258	24	38	0	FALSE	ACH-000903
FTC133_THYROID	R3HDM4--ARID3A	65	3	R3HDM4	1154	chr19:913087:-	ARID3A	12382	chr19:929262:+	ONLY_REF_SPLICE	YES	47	1	0.59	0.99	0.6764	0.0312	LOCAL_INVERSION:-:+:[12541],R3HDM4->R3H_domain_containing_4,chr19:896503-913240:-,ARID3A->AT-rich_interaction_domain_3A,chr19:925781-975939:+	FTC133_THYROID	0.59	0.99	0.7076	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	TIMM23--RP11-464F9.1	64	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	178	0	0.27	1	0.666	0.0312	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	FTC133_THYROID	0.27	1	0.6972	TRUE	519	3926	326	965	0	FALSE	ACH-000903
FTC133_THYROID	COL8A1--CMSS1	40	23	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	369	155	0.15	0.29	0.4163	0.2394	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	FTC133_THYROID	0.15	0.29	0.6557	FALSE	76	19	3	26	0	FALSE	ACH-000903
FTC133_THYROID	VPS26A--RP11-346D6.6	33	8	VPS26A	2919	chr10:70892803:+	RP11-346D6.6	19633	chr10:54214509:-	ONLY_REF_SPLICE	YES	115	1	0.26	0.98	0.3434	0.0833	VPS26A->VPS26_retromer_complex_component_A,chr10:70883268-70932617:+,RP11-346D6.6->chr10:54210634-54230293:-	FTC133_THYROID	0.26	0.98	0.4267	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	C10orf11--RNLS	22	14	C10orf11	11660	chr10:78084243:+	RNLS	33353	chr10:90122482:-	ONLY_REF_SPLICE	YES	8	8	0.82	0.82	0.2289	0.1457	C10orf11->chr10:77360998-78319925:+,chromosome_10_open_reading_frame_11,RNLS->chr10:90033621-90344287:-,renalase,_FAD-dependent_amine_oxidase	FTC133_THYROID	0.82	0.82	0.3746	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	MT-ND6--MT-TE	25	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2602	0.0208	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FTC133_THYROID	1	1	0.281	FALSE	499	1288	110	792	0	FALSE	ACH-000903
FTC133_THYROID	COL8A1--CMSS1	22	13	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	397	155	0.08	0.18	0.2289	0.1353	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	FTC133_THYROID	0.08	0.18	0.3642	FALSE	38	10	2	29	0	FALSE	ACH-000903
FTC133_THYROID	MT-TA--MT-TC	23	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2394	0.0208	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	FTC133_THYROID	1	1	0.2602	FALSE	462	80	0	856	0	FALSE	ACH-000903
FTC133_THYROID	CNTNAP2--TPK1	21	5	CNTNAP2	18196	chr7:147675081:+	TPK1	65311	chr7:144150756:-	ONLY_REF_SPLICE	YES	0	52	1	0.33	0.2185	0.052	CNTNAP2->chr7:145813453-148118090:+,contactin_associated_protein-like_2,TPK1->Oncogene{Bushman},chr7:144149034-144533488:-,thiamin_pyrophosphokinase_1	FTC133_THYROID	0.33	1	0.2705	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	RP1-34H18.1--NAV3	17	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1769	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	FTC133_THYROID	1	1	0.1769	TRUE	254	575	65	124	0	FALSE	ACH-000903
FTC133_THYROID	CTD-2337A12.1--CAST	15	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	23	1	0.42	0.1561	0.0208	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	FTC133_THYROID	0.42	1	0.1769	TRUE	347	1186	183	220	0	FALSE	ACH-000903
FTC133_THYROID	REV3L--RPL28	14	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1457	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	FTC133_THYROID	1	1	0.1457	TRUE	22	156	2	142	0	FALSE	ACH-000903
FTC133_THYROID	FTH1--ACTB	12	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	5093	2	0	0.88	0.1249	0.0208	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	FTC133_THYROID	0	0.88	0.1457	TRUE	1	0	0	97	0	FALSE	ACH-000903
FTC133_THYROID	TPK1--CNTNAP2	12	1	TPK1	24669	chr7:144245584:-	CNTNAP2	46209	chr7:147336198:+	ONLY_REF_SPLICE	YES	56	0	0.19	1	0.1249	0.0104	TPK1->Oncogene{Bushman},chr7:144149034-144533488:-,thiamin_pyrophosphokinase_1,CNTNAP2->chr7:145813453-148118090:+,contactin_associated_protein-like_2	FTC133_THYROID	0.19	1	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	NINL--RP4-718D20.3	11	2	NINL	3351	chr20:25498389:-	RP4-718D20.3	36157	chr20:19674106:-	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.1145	0.0208	NINL->chr20:25433341-25566153:-,ninein_like,RP4-718D20.3->chr20:19673853-19678220:-	FTC133_THYROID	0.76	1	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	RP11-680G10.1--GSE1	10	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	11	1	0.52	0.1041	0.0208	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	FTC133_THYROID	0.52	1	0.1249	TRUE	458	1351	185	561	0	FALSE	ACH-000903
FTC133_THYROID	RP11-120D5.1--MID1	10	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	32	1	0.26	0.1041	0.0104	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	FTC133_THYROID	0.26	1	0.1145	FALSE	16	356	14	466	0	FALSE	ACH-000903
FTC133_THYROID	COL8A1--CMSS1	3	21	COL8A1	14564	chr3:99513226:+	CMSS1	32895	chr3:99865820:+	INCL_NON_REF_SPLICE	YES	369	150	0.06	0.14	0.0312	0.2185	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	FTC133_THYROID	0.06	0.14	0.2497	FALSE	76	19	3	26	0	FALSE	ACH-000903
FTC133_THYROID	MT-ND6--MT-TE	5	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.052	0.0937	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FTC133_THYROID	0.88	1	0.1457	FALSE	499	1288	110	792	0	FALSE	ACH-000903
FTC133_THYROID	FN1--S100A6	6	3	FN1	12528	chr2:216285399:-	S100A6	55195	chr1:153508461:-	INCL_NON_REF_SPLICE	YES	3322	18	0	0.33	0.0624	0.0312	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	FTC133_THYROID	0	0.33	0.0936	FALSE	0	0	0	7	0	FALSE	ACH-000903
FTC133_THYROID	FN1--S100A6	6	3	FN1	12519	chr2:216285408:-	S100A6	55186	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	3161	17	0	0.35	0.0624	0.0312	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	FTC133_THYROID	0	0.35	0.0936	FALSE	0	0	0	7	0	FALSE	ACH-000903
FTC133_THYROID	FTH1--ACTB	6	3	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	5196	2	0	0.82	0.0624	0.0312	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	FTC133_THYROID	0	0.82	0.0936	FALSE	1	0	0	97	0	FALSE	ACH-000903
FTC133_THYROID	VIM-AS1--RPL35	6	3	VIM-AS1	1587	chr10:17271398:-	RPL35	9835	chr9:127624220:-	INCL_NON_REF_SPLICE	YES	2120	0	0	1	0.0624	0.0312	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,RPL35->chr9:127620159-127624260:-,ribosomal_protein_L35	FTC133_THYROID	0	1	0.0936	FALSE	0	0	0	2	0	FALSE	ACH-000903
FTC133_THYROID	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	33	1	0.17	0.0624	0.0104	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	FTC133_THYROID	0.17	1	0.0728	TRUE	465	1949	224	605	0	FALSE	ACH-000903
FTC133_THYROID	DNAJC25--UGCG	6	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0624	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	FTC133_THYROID	1	1	0.0624	TRUE	50	73	10	50	0	FALSE	ACH-000903
FTC133_THYROID	WI2-1896O14.1--RP11-353N4.1	3	12	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	5570	chr1:149591759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0.1249	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	FTC133_THYROID	1	1	0.1561	TRUE	361	258	24	38	0	FALSE	ACH-000903
FTC133_THYROID	FTH1--ACTB	5	2	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	5095	2	0	0.78	0.052	0.0208	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	FTC133_THYROID	0	0.78	0.0728	FALSE	1	0	0	97	0	FALSE	ACH-000903
FTC133_THYROID	MT-TA--MT-TC	5	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0.0208	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	FTC133_THYROID	1	1	0.0728	FALSE	462	80	0	856	0	FALSE	ACH-000903
FTC133_THYROID	RP11-1E3.1--RP11-455B3.1	5	1	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0.0104	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	FTC133_THYROID	1	1	0.0624	TRUE	13	49	2	38	0	FALSE	ACH-000903
FTC133_THYROID	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	FTC133_THYROID	1	1	0.052	FALSE	462	80	0	856	0	FALSE	ACH-000903
FTC133_THYROID	VPS26A--RP11-346D6.6	3	8	VPS26A	2919	chr10:70892803:+	RP11-346D6.6	18045	chr10:54223092:-	ONLY_REF_SPLICE	YES	115	0	0.09	1	0.0312	0.0833	VPS26A->VPS26_retromer_complex_component_A,chr10:70883268-70932617:+,RP11-346D6.6->chr10:54210634-54230293:-	FTC133_THYROID	0.09	1	0.1145	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	RP11-120D5.1--MID1	4	2	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	0	32	1	0.16	0.0416	0.0208	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	FTC133_THYROID	0.16	1	0.0624	FALSE	0	9	0	55	0	FALSE	ACH-000903
FTC133_THYROID	FTH1--ACTB	4	1	FTH1	1234	chr11:61734899:-	ACTB	12526	chr7:5569297:-	INCL_NON_REF_SPLICE	YES	5108	109	0	0.04	0.0416	0.0104	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	FTC133_THYROID	0	0.04	0.052	FALSE	1	0	0	97	0	FALSE	ACH-000903
FTC133_THYROID	EFCAB11--RP11-944C7.1	4	0	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	FTC133_THYROID	1	1	0.0416	TRUE	31	91	1	18	0	FALSE	ACH-000903
FTC133_THYROID	LIMK1--MT-ND4	4	0	LIMK1	19532	chr7:73536490:+	MT-ND4	23364	chrM:11226:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	LIMK1->LIM_domain_kinase_1,Oncogene{Bushman},chr7:73497263-73536855:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	FTC133_THYROID	1	1	0.0416	FALSE	0	0	0	2	0	FALSE	ACH-000903
FTC133_THYROID	PPDPF--S100A6	4	0	PPDPF	1591	chr20:62152667:+	S100A6	5734	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	PPDPF->chr20:62152077-62153559:+,pancreatic_progenitor_cell_differentiation_and_proliferation_factor,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	FTC133_THYROID	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	FN1--S100A6	3	3	FN1	12522	chr2:216285405:-	S100A6	55189	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	3161	17	0	0.26	0.0312	0.0312	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	FTC133_THYROID	0	0.26	0.0624	FALSE	0	0	0	7	0	FALSE	ACH-000903
FTC133_THYROID	FTH1--ACTB	3	2	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	4558	2	0	0.71	0.0312	0.0208	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	FTC133_THYROID	0	0.71	0.052	FALSE	1	0	0	97	0	FALSE	ACH-000903
FTC133_THYROID	COL8A1--CMSS1	2	5	COL8A1	12080	chr3:99463865:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	NO	594	155	0.01	0.04	0.0208	0.052	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	FTC133_THYROID	0.01	0.04	0.0728	FALSE	4	4	0	17	0	FALSE	ACH-000903
FTC133_THYROID	CTD-2337A12.1--CAST	3	0	CTD-2337A12.1	3267	chr5:95654248:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	FTC133_THYROID	1	1	0.0312	TRUE	0	4	0	5	0	FALSE	ACH-000903
FTC133_THYROID	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FTC133_THYROID	1	1	0.0312	FALSE	499	1288	110	792	0	FALSE	ACH-000903
FTC133_THYROID	RP11-1E3.1--RP11-455B3.1	3	0	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	8873	chr5:97235342:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	FTC133_THYROID	1	1	0.0312	TRUE	0	1	0	5	0	FALSE	ACH-000903
FTC133_THYROID	TMSB10--RPS2	3	0	TMSB10	1889	chr2:85133637:+	RPS2	7385	chr16:2012524:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2	FTC133_THYROID	1	1	0.0312	TRUE	0	0	0	3	0	TRUE	ACH-000903
FTC133_THYROID	TMSB10--RPS2	3	0	TMSB10	1922	chr2:85133670:+	RPS2	7643	chr16:2012266:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2	FTC133_THYROID	1	1	0.0312	TRUE	0	0	0	3	0	TRUE	ACH-000903
FTC133_THYROID	CNTNAP2--TPK1	2	1	CNTNAP2	17068	chr7:147600813:+	TPK1	65311	chr7:144150756:-	ONLY_REF_SPLICE	YES	3	52	0.5	0.05	0.0208	0.0104	CNTNAP2->chr7:145813453-148118090:+,contactin_associated_protein-like_2,TPK1->Oncogene{Bushman},chr7:144149034-144533488:-,thiamin_pyrophosphokinase_1	FTC133_THYROID	0.05	0.5	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	BNC2--C9orf92	2	0	BNC2	12784	chr9:16435553:-	C9orf92	33426	chr9:16215897:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_FI:{Esophagus=[count:2=pct:0.5],Lung=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},BNC2->basonuclin_2,chr9:16409501-16870841:-,C9orf92->chr9:16203933-16276311:-,chromosome_9_open_reading_frame_92	FTC133_THYROID	1	1	0.0208	TRUE	1	21	1	1	21	TRUE	ACH-000903
FTC133_THYROID	CRYM--SSR3	2	0	CRYM	1106	chr16:21314299:-	SSR3	23325	chr3:156262228:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	CRYM->chr16:21250195-21314404:-,crystallin_mu,SSR3->chr3:156257929-156272973:-,signal_sequence_receptor,_gamma_(translocon-associated_protein_gamma)	FTC133_THYROID	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	CTNNB1--ULK4	2	0	CTNNB1	3896	chr3:41241161:+	ULK4	56314	chr3:41723295:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_v2:{count=8;pct=0.09%;dist=Heart_-_Atrial_Appendage=2,Lung=1,Prostate=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Colon_-_Transverse=1},NEIGHBORS_OVERLAP:+:-:[13497],CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	FTC133_THYROID	1	1	0.0208	FALSE	0	0	0	3	0	FALSE	ACH-000903
FTC133_THYROID	DCBLD1--NUP214	2	0	DCBLD1	8724	chr6:117825142:+	NUP214	41150	chr9:134019667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	DCBLD1->chr6:117774980-117891021:+,discoidin,_CUB_and_LCCL_domain_containing_1,NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa	FTC133_THYROID	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	FKBP2--ARHGAP10	2	0	FKBP2	2556	chr11:64010030:+	ARHGAP10	32198	chr4:148944414:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	FKBP2->FK506_binding_protein_2,chr11:64008475-64011604:+,ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+	FTC133_THYROID	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	L2HGDH--C14orf142	2	0	L2HGDH	1538	chr14:50778729:-	C14orf142	21318	chr14:93670127:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	L2HGDH->L-2-hydroxyglutarate_dehydrogenase,chr14:50704281-50779266:-,C14orf142->chr14:93669239-93673439:-,chromosome_14_open_reading_frame_142	FTC133_THYROID	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	RAD23A--GADD45GIP1	2	0	RAD23A	1166	chr19:13056834:+	GADD45GIP1	10549	chr19:13065340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	LOCAL_INVERSION:+:-:[516],RAD23A->Oncogene{Bushman},RAD23_homolog_A,_nucleotide_excision_repair_protein,chr19:13056669-13064456:+,GADD45GIP1->GADD45G_interacting_protein_1,Oncogene{Bushman},chr19:13064972-13068050:-	FTC133_THYROID	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000903
FTC133_THYROID	RP1-34H18.1--RP11-781A6.1	2	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	FTC133_THYROID	1	1	0.0208	TRUE	94	160	11	37	0	FALSE	ACH-000903
FTC133_THYROID	RP11-417J8.3--TEKT4	2	0	RP11-417J8.3	3008	chr1:142621059:+	TEKT4	18977	chr2:95540521:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	RP11-417J8.3->chr1:142618769-142729975:+,TEKT4->chr2:95537178-95542574:+,tektin_4	FTC133_THYROID	1	1	0.0208	TRUE	0	5	0	1	5	TRUE	ACH-000903
FTC133_THYROID	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	FTC133_THYROID	1	1	0.0208	TRUE	53	396	64	110	0	FALSE	ACH-000903
FTC133_THYROID	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	NO	0	13	1	0.13	0.0104	0.0104	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	FTC133_THYROID	0.13	1	0.0208	FALSE	0	23	1	67	0	FALSE	ACH-000903
FTC133_THYROID	RP11-1379J22.5--RRBP1	1	1	RP11-1379J22.5	1720	chr5:179085482:+	RRBP1	14510	chr20:17617374:-	ONLY_REF_SPLICE	NO	1	168	0.67	0.01	0.0104	0.0104	RP11-1379J22.5->chr5:179084763-179091433:+,RRBP1->chr20:17594323-17662940:-,ribosome_binding_protein_1	FTC133_THYROID	0.01	0.67	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000903
FTC133_THYROID	VPS26A--RP11-346D6.6	1	1	VPS26A	2919	chr10:70892803:+	RP11-346D6.6	20797	chr10:54211277:-	ONLY_REF_SPLICE	YES	115	1	0.02	0.67	0.0104	0.0104	VPS26A->VPS26_retromer_complex_component_A,chr10:70883268-70932617:+,RP11-346D6.6->chr10:54210634-54230293:-	FTC133_THYROID	0.02	0.67	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000903
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	379	129	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	2	1	1	3.0681	1.0443	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	4.1124	TRUE	361	258	24	38	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	222	107	NPM1	4640	chr5:170818803:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	YES	380	0	0.46	1	1.7972	0.8662	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	1	2.6634	TRUE	0	0	0	6	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	55	26	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	36	20	0.69	0.8	0.4452	0.2105	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.8	0.6557	TRUE	181	1564	124	196	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	52	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.421	0.1214	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5424	TRUE	508	994	45	981	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	17	141	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	5570	chr1:149591759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1376	1.1414	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.279	TRUE	361	258	24	38	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	34	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2752	0.0324	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3076	FALSE	462	80	0	856	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	31	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.251	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.251	TRUE	519	3926	326	965	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	28	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	4	1	0.9	0.2267	0.0567	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.2834	TRUE	477	1352	189	275	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	20	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	43	14	0.41	0.68	0.1619	0.081	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.68	0.2429	TRUE	267	562	48	632	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUCKS1--TATDN3	16	0	NUCKS1	1320	chr1:205719085:-	TATDN3	22086	chr1:212976043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1295	0	NUCKS1->chr1:205681947-205719404:-,nuclear_casein_kinase_and_cyclin-dependent_kinase_substrate_1,TATDN3->TatD_DNase_domain_containing_3,chr1:212965170-212989968:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1295	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	14	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1133	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1133	TRUE	0	0	0	518	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.81	1	0.089	0.0162	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.1052	FALSE	499	1288	110	792	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	10	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.081	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.081	FALSE	515	4851	409	746	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC122--ENOX1	9	1	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	13	0	0.43	1	0.0729	0.0081	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.081	FALSE	39	52	2	34	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	6	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	43	14	0.22	0.46	0.0486	0.0486	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.46	0.0972	TRUE	267	562	48	632	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0.0081	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0567	FALSE	499	1288	110	792	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0486	FALSE	462	80	0	856	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0.0567	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0891	FALSE	499	1288	110	792	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0.0162	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0567	FALSE	499	1288	110	792	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0.0405	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0729	FALSE	462	80	0	856	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MTCH1	5	0	MT-ND6	1333	chrM:14341:-	MTCH1	13221	chr6:36937627:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MTCH1->chr6:36935917-36954074:-,mitochondrial_carrier_1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0405	FALSE	0	0	0	1	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-662B19.2--WDR37	5	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0405	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0405	TRUE	31	42	1	25	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0.0243	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0567	FALSE	462	80	0	856	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	1	14	NPM1	1891	chr5:170815010:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	YES	576	0	0.03	1	0.0081	0.1133	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.1214	TRUE	0	0	0	3	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC079305.11--AC073636.1	4	0	AC079305.11	3370	chr2:177959303:-	AC073636.1	12747	chr2:177711105:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	AC079305.11->chr2:177855236-178029244:-,AC073636.1->chr2:177710721-177714156:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0324	TRUE	1	14	0	1	14	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0324	FALSE	499	1288	110	792	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMC4--RFXAP	4	0	SMC4	22193	chr3:160149613:+	RFXAP	28996	chr13:37394026:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	SMC4->chr3:160117062-160152750:+,structural_maintenance_of_chromosomes_4,RFXAP->chr13:37393361-37403241:+,regulatory_factor_X_associated_protein	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	3	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	4	1	0.6	0.0243	0.0243	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.0486	TRUE	274	363	69	150	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-565E6.1--HYDIN	3	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0.0081	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0324	TRUE	456	1387	91	133	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AARS--SHKBP1	3	0	AARS	18933	chr16:70286740:-	SHKBP1	32179	chr19:41095032:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0243	0	AARS->alanyl-tRNA_synthetase,chr16:70286198-70323446:-,SHKBP1->SH3KBP1_binding_protein_1,chr19:41082757-41097305:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATXN2L--SDCCAG8	3	0	ATXN2L	11610	chr16:28846493:+	SDCCAG8	36640	chr1:243579051:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0243	0	ATXN2L->ataxin_2_like,chr16:28834356-28848558:+,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	3	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	347	1186	183	220	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NEAT1--EIF4G2	3	0	NEAT1	2894	chr11:65192138:+	EIF4G2	36075	chr11:10821350:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0243	0	NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding),EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	P2RY8--HLA-DPB1	3	0	P2RY8	1187	chrX:1655814:-	HLA-DPB1	10572	chr6:33043815:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0243	0	P2RY8->Oncogene{Bushman},chrX:1581465-1656000:-,chrY:1531465-1606000:-,purinergic_receptor_P2Y8,HLA-DPB1->chr6:33043703-33054978:+,major_histocompatibility_complex,_class_II,_DP_beta_1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	FALSE	0	0	0	1	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PNISR--RP11-798M19.3	3	0	PNISR	11871	chr6:99852479:-	RP11-798M19.3	22499	chr4:174247871:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-,RP11-798M19.3->chr4:174243357-174250845:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKDC--SH3BP2	3	0	PRKDC	26650	chr8:48812933:-	SH3BP2	106827	chr4:2831220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,SH3BP2->Oncogene{Bushman},SH3_domain_binding_protein_2,chr4:2794750-2842825:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	QKI--MBOAT1	3	0	QKI	10630	chr6:163956157:+	MBOAT1	32200	chr6:20153000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,MBOAT1->chr6:20100935-20212670:-,membrane_bound_O-acyltransferase_domain_containing_1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAP1GDS1--MICU2	3	0	RAP1GDS1	9352	chr4:99313231:+	MICU2	39988	chr13:22069457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+,MICU2->chr13:22066836-22178353:-,mitochondrial_calcium_uptake_2	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF3B1--ADD2	3	0	SF3B1	8297	chr2:198274665:-	ADD2	51218	chr2:70889650:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0243	0	SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1,ADD2->adducin_2,chr2:70834750-70995357:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM52--SRP9	3	0	TRIM52	2118	chr5:180687002:-	SRP9	10044	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	TRIM52->chr5:180681417-180688119:-,tripartite_motif_containing_52,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VWA8--LDLR	3	0	VWA8	14156	chr13:42404665:-	LDLR	61663	chr19:11217241:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	VWA8->chr13:42140973-42535256:-,von_Willebrand_factor_A_domain_containing_8,LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	4	1	0.67	0.0081	0.0567	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0648	TRUE	160	277	29	98	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf25--DAZAP1	2	1	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	22	103	0.12	0.03	0.0162	0.0081	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.12	0.0243	TRUE	6	7	1	24	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADAMTS6--NAMPT	2	0	ADAMTS6	7932	chr5:64747302:-	NAMPT	52718	chr7:105893597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	ADAMTS6->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_6,chr5:64444563-64777747:-,NAMPT->chr7:105888731-105926772:-,nicotinamide_phosphoribosyltransferase	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AGFG1--HABP4	2	0	AGFG1	1437	chr2:228337304:+	HABP4	30512	chr9:99227619:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,HABP4->chr9:99212483-99253618:+,hyaluronan_binding_protein_4	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ALG13--ERCC6L	2	0	ALG13	29581	chrX:111000990:+	ERCC6L	36715	chrX:71428548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	ALG13->ALG13,_UDP-N-acetylglucosaminyltransferase_subunit,chrX:110909043-111003877:+,ERCC6L->chrX:71424510-71458897:-,excision_repair_cross-complementation_group_6_like	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD11--CTD-2410N18.5	2	0	ANKRD11	4629	chr16:89484692:-	CTD-2410N18.5	39557	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,CTD-2410N18.5->chr5:133502861-133561762:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	APC--RBCK1	2	0	APC	7288	chr5:112111434:+	RBCK1	38692	chr20:398170:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,RBCK1->RANBP2-type_and_C3HC4-type_zinc_finger_containing_1,chr20:388142-411610:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASMTL--TSPAN4	2	0	ASMTL	13887	chrX:1536866:-	TSPAN4	22173	chr11:847201:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	ASMTL->acetylserotonin_O-methyltransferase-like,chrX:1522032-1572655:-,chrY:1472032-1522655:-,TSPAN4->chr11:842808-867116:+,tetraspanin_4	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf62--TBCD	2	0	C17orf62	1130	chr17:80408576:-	TBCD	50251	chr17:80882815:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	C17orf62->chr17:80400465-80408705:-,chromosome_17_open_reading_frame_62,TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTA-211A9.5--LMNB1	2	0	CTA-211A9.5	1221	chr22:27068950:+	LMNB1	24925	chr5:126147465:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	CTA-211A9.5->chr22:27068730-27176170:+,LMNB1->chr5:126112315-126172712:+,lamin_B1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTSH--NSUN2	2	0	CTSH	2311	chr15:79237233:-	NSUN2	29791	chr5:6611911:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	CTSH->Oncogene{Bushman},cathepsin_H,chr15:79213400-79241916:-,NSUN2->NOP2/Sun_RNA_methyltransferase_family_member_2,chr5:6599352-6633404:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTSL--B3GNTL1	2	0	CTSL	1880	chr9:90341313:+	B3GNTL1	11136	chr17:81006661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	CTSL->cathepsin_L,chr9:90340434-90346308:+,B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND1C--HDC	2	0	DENND1C	1879	chr19:6481690:-	HDC	21848	chr15:50546861:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	DENND1C->DENN_domain_containing_1C,chr19:6467218-6482568:-,HDC->chr15:50534144-50558223:-,histidine_decarboxylase	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND6B--SF3B3	2	0	DENND6B	1249	chr22:50765241:-	SF3B3	26780	chr16:70578341:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-,SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM60A--LEMD3	2	0	FAM60A	2035	chr12:31478958:-	LEMD3	21476	chr12:65604706:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNPAT--PICALM	2	0	GNPAT	1250	chr1:231377202:+	PICALM	21288	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	GNPAT->chr1:231376953-231413719:+,glyceronephosphate_O-acyltransferase,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPHN--LINC00871	2	0	GPHN	11852	chr14:67346751:+	LINC00871	43639	chr14:46907384:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,LINC00871->chr14:46410146-46971026:+,long_intergenic_non-protein_coding_RNA_871	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPR--PPP2R5C	2	0	HNRNPR	4150	chr1:23664247:-	PPP2R5C	53151	chr14:102378738:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IRF4--STK24	2	0	IRF4	8497	chr6:401777:+	STK24	22423	chr13:99171727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	IRF4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:391739-411447:+,interferon_regulatory_factor_4,STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIF27--PCSK5	2	0	KIF27	2442	chr9:86530209:-	PCSK5	35951	chr9:78722167:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	KIF27->chr9:86451613-86536342:-,kinesin_family_member_27,PCSK5->chr9:78505560-78977255:+,proprotein_convertase_subtilisin/kexin_type_5	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LEPR--RFC5	2	0	LEPR	2252	chr1:65891061:+	RFC5	39925	chr12:118456877:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	LEPR->chr1:65886248-66107242:+,leptin_receptor,RFC5->chr12:118451393-118470935:+,replication_factor_C_subunit_5	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LUC7L2--CABIN1	2	0	LUC7L2	11224	chr7:139102475:+	CABIN1	45125	chr22:24509533:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+,CABIN1->calcineurin_binding_protein_1,chr22:24407642-24574596:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MARK3--KLC1	2	0	MARK3	3189	chr14:103871604:+	KLC1	33532	chr14:104120901:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	NEIGHBORS[58065],MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	FALSE	0	0	0	1	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFS2--HDC	2	0	NDUFS2	7979	chr1:161179385:+	HDC	20201	chr15:50546861:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	NDUFS2->NADH:ubiquinone_oxidoreductase_core_subunit_S2,chr1:161166894-161184185:+,HDC->chr15:50534144-50558223:-,histidine_decarboxylase	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOL10--FIP1L1	2	0	NOL10	5441	chr2:10813646:-	FIP1L1	30983	chr4:54249940:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	NOL10->chr2:10710892-10830101:-,nucleolar_protein_10,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP133--CDADC1	2	0	NUP133	19779	chr1:229600371:-	CDADC1	36204	chr13:49833482:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	NUP133->Oncogene{Bushman},chr1:229577045-229644103:-,nucleoporin_133kDa,CDADC1->chr13:49822047-49867618:+,cytidine_and_dCMP_deaminase_domain_containing_1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4D--ZSWIM6	2	0	PDE4D	27343	chr5:58511603:-	ZSWIM6	60176	chr5:60768508:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	QSER1--LDHA	2	0	QSER1	13432	chr11:32979632:+	LDHA	34285	chr11:18422384:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	QSER1->chr11:32914724-33014862:+,glutamine_and_serine_rich_1,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAD51--PLEKHO2	2	0	RAD51	9458	chr15:41021022:+	PLEKHO2	21322	chr15:65157098:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	RAD51->ArcherDX_panel,FoundationOne_panel,RAD51_recombinase,chr15:40986972-41024354:+,PLEKHO2->chr15:65134088-65160206:+,pleckstrin_homology_domain_containing_O2	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBBP7--TSPAN9	2	0	RBBP7	6902	chrX:16871805:-	TSPAN9	30235	chr12:3392211:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	RBBP7->Oncogene{Bushman},chrX:16857406-16888537:-,retinoblastoma_binding_protein_7,TSPAN9->chr12:3186521-3395730:+,tetraspanin_9	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM45--BUB3	2	0	RBM45	8975	chr2:178990911:+	BUB3	25398	chr10:124924563:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	RBM45->RNA_binding_motif_protein_45,chr2:178977151-179003738:+,BUB3->BUB3,_mitotic_checkpoint_protein,chr10:124913793-124924886:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RIPK1--UBE2J1	2	0	RIPK1	2307	chr6:3068895:+	UBE2J1	20333	chr6:90053475:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	RIPK1->chr6:3064225-3115421:+,receptor_interacting_serine/threonine_kinase_1,UBE2J1->chr6:90036344-90062567:-,ubiquitin_conjugating_enzyme_E2_J1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RLF--MYCL	2	0	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	10	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF115--VDAC3	2	0	RNF115	8125	chr1:145683647:+	VDAC3	33145	chr8:42262889:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	RNF115->chr1:145611036-145696218:+,ring_finger_protein_115,VDAC3->chr8:42249142-42263415:+,voltage_dependent_anion_channel_3	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL4--INSIG1	2	0	RPL4	5555	chr15:66795396:-	INSIG1	16204	chr7:155093961:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	RPL4->chr15:66790355-66816870:-,ribosomal_protein_L4,INSIG1->chr7:155089486-155101945:+,insulin_induced_gene_1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAF8--TULP4	2	0	SCAF8	1606	chr6:155055064:+	TULP4	36295	chr6:158882595:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	SCAF8->SR-related_CTD_associated_factor_8,chr6:155054459-155155192:+,TULP4->chr6:158733692-158932860:+,tubby_like_protein_4	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SND1--TMEM243	2	0	SND1	13407	chr7:127347701:+	TMEM243	45607	chr7:86828373:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1,TMEM243->chr7:86825478-86849903:-,transmembrane_protein_243	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAPPC11--RNF149	2	0	TRAPPC11	2406	chr4:184585224:+	RNF149	35647	chr2:101902639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	TRAPPC11->chr4:184580420-184634745:+,trafficking_protein_particle_complex_11,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTI1--DCAF8	2	0	TTI1	1065	chr20:36661806:-	DCAF8	36881	chr1:160188758:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-,DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VPS8--B3GNTL1	2	0	VPS8	27024	chr3:184587316:+	B3GNTL1	66241	chr17:81006661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+,B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VWDE--GLCCI1	2	0	VWDE	1283	chr7:12443285:-	GLCCI1	37597	chr7:8043538:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,GLCCI1->chr7:8008425-8133902:+,glucocorticoid_induced_1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XPO5--CARHSP1	2	0	XPO5	20449	chr6:43514308:-	CARHSP1	39456	chr16:8953192:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	XPO5->chr6:43490072-43543812:-,exportin_5,CARHSP1->calcium_regulated_heat_stable_protein_1,chr16:8946799-8962866:-	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF133--RER1	2	0	ZNF133	1128	chr20:18269248:+	RER1	18589	chr1:2327223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	ZNF133->chr20:18269121-18297640:+,zinc_finger_protein_133,RER1->chr1:2323267-2336883:+,retention_in_endoplasmic_reticulum_sorting_receptor_1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF655--GAK	2	0	ZNF655	4083	chr7:99159596:+	GAK	27254	chr4:887797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	ZNF655->chr7:99156029-99174076:+,zinc_finger_protein_655,GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPN12--SH2D4A	1	1	PTPN12	1371	chr7:77166962:+	SH2D4A	39293	chr8:19250829:+	ONLY_REF_SPLICE	YES	8	12	0.2	0.14	0.0081	0.0081	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,SH2D4A->SH2_domain_containing_4A,chr8:19171128-19253729:+	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.2	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0081	0.0081	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0162	FALSE	0	23	1	67	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0081	0.0081	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0162	FALSE	16	356	14	466	0	FALSE	ACH-000338
SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WIPF1--MTX2	1	1	WIPF1	11576	chr2:175462329:-	MTX2	31344	chr2:177161588:+	ONLY_REF_SPLICE	YES	212	136	0.01	0.01	0.0081	0.0081	WIPF1->WAS/WASL_interacting_protein_family_member_1,chr2:175424300-175547644:-,MTX2->chr2:177134123-177202753:+,metaxin_2	SR786_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0162	FALSE	0	0	0	1	0	FALSE	ACH-000338
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	2135	29	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	14	0	0.99	1	19.6255	0.2666	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	19.8921	FALSE	344	827	44	306	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	269	101	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	44	20	0.89	0.95	2.4727	0.9284	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.95	3.4011	TRUE	0	2	1	16	2	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	107	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9836	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9836	FALSE	369	2501	205	193	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE3C--MNX1-AS2	101	7	UBE3C	1426	chr7:156932032:+	MNX1-AS2	34028	chr7:156799571:+	ONLY_REF_SPLICE	YES	7	0	0.94	1	0.9284	0.0643	UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C,MNX1-AS2->MNX1_antisense_RNA_2,chr7:156799001-156799826:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.9927	TRUE	0	0	0	1	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--ZSWIM6	102	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9376	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9376	TRUE	47	32	1	28	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	97	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8917	0.1379	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0296	TRUE	508	994	45	981	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	58	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	174	2	0.25	0.97	0.5332	0.0092	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.97	0.5424	TRUE	519	3926	326	965	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR89B--CTD-2104P17.1	48	24	GPR89B	5011	chr1:147416212:+	CTD-2104P17.1	22052	chr17:19532902:+	INCL_NON_REF_SPLICE	YES	66	2	0.52	0.97	0.4412	0.2206	GPR89B->G_protein-coupled_receptor_89B,chr1:147400506-147465753:+,CTD-2104P17.1->chr17:19519102-19537138:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.97	0.6618	TRUE	0	0	0	1	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	48	16	ABL1	1510	chr9:133589842:+	BCR	40306	chr22:23632526:+	ONLY_REF_SPLICE	YES	8	46	0.89	0.58	0.4412	0.1471	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	0.89	0.5883	TRUE	0	0	0	6	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	150	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	5	1	0.97	0.99	0.0552	1.3788	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	0.99	1.434	FALSE	344	826	44	306	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC47--SCN4A	37	25	CCDC47	3676	chr17:61850772:-	SCN4A	22031	chr17:62045715:-	ONLY_REF_SPLICE	YES	218	0	0.22	1	0.3401	0.2298	CCDC47->chr17:61822610-61853711:-,coiled-coil_domain_containing_47,SCN4A->chr17:62015914-62050278:-,sodium_voltage-gated_channel_alpha_subunit_4	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.5699	TRUE	0	0	0	1	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	39	6	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	NO	36	152	0.56	0.23	0.3585	0.0552	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.56	0.4137	FALSE	92	22	4	61	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	150	MT-ND4	1209	chrM:10968:+	MT-ND4L	5470	chrM:10561:+	INCL_NON_REF_SPLICE	YES	7	0	0.96	1	0.0276	1.3788	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	1.4064	FALSE	344	826	44	306	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	140	MT-ND4	1092	chrM:10851:+	MT-ND4L	5537	chrM:10628:+	INCL_NON_REF_SPLICE	YES	6	2	0.96	0.99	0.0368	1.2869	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.99	1.3237	FALSE	344	826	44	306	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	112	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	2	0.96	0.98	0.046	1.0295	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.98	1.0755	FALSE	344	821	44	306	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	104	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	5	0	0.96	1	0.0552	0.956	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	1.0112	FALSE	344	826	44	306	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	31	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.285	0.0184	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3034	FALSE	462	80	0	856	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	99	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	23	0	0.82	1	0.046	0.91	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.956	FALSE	344	827	44	306	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	29	2	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	6341	0	0	1	0.2666	0.0184	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.285	TRUE	0	0	0	100	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	4	99	BCR	20761	chr22:23631808:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	44	19	0.7	0.84	0.0368	0.91	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.84	0.9468	TRUE	0	2	1	16	2	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	26	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.239	0.0368	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2758	FALSE	499	1288	110	792	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	8	61	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0735	0.5607	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6342	FALSE	369	2501	205	193	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE3C--MNX1-AS1	23	0	UBE3C	1426	chr7:156932032:+	MNX1-AS1	34961	chr7:156808583:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2114	0	UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C,MNX1-AS1->MNX1_antisense_RNA_1_(head_to_head),chr7:156803499-156809120:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	79	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	4	0	0.95	1	0.0276	0.7262	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.7538	FALSE	344	826	44	306	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	9	51	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0827	0.4688	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5515	FALSE	369	2501	205	193	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	21	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.193	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.193	FALSE	369	2501	205	193	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	20	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1838	0.0276	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2114	FALSE	462	80	0	856	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	8	39	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0735	0.3585	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.432	FALSE	369	2501	205	193	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	12	22	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1103	0.2022	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3125	FALSE	369	2501	205	193	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	14	6	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1287	0.0552	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1839	TRUE	0	1	0	84	1	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	30	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	6828	0	0.01	1	0.0735	0.2758	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.3493	FALSE	328	800	43	304	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ITGB3BP	15	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1379	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1379	TRUE	0	6	0	9	2	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	13	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2063	0	0.01	1	0.1195	0.0184	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1379	FALSE	13	9	0	364	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1011	0.0919	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.193	FALSE	499	1288	110	792	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	12	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2077	0	0.01	1	0.1103	0.0184	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1287	FALSE	13	9	0	364	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	11	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	14	1	0.55	0.1011	0.0552	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.1563	TRUE	458	1351	185	561	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	11	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	32	13	0.32	0.54	0.1011	0.0368	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.54	0.1379	TRUE	267	562	48	632	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1011	0.0368	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1379	FALSE	499	1288	110	792	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	10	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	91	1	0.12	0.0919	0.0184	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.1103	TRUE	465	1949	224	605	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	16	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0.1471	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2023	FALSE	369	2501	205	193	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	8	7	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0735	0.0643	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1378	TRUE	0	1	0	84	1	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR89B--CTD-2104P17.1	3	24	GPR89B	5011	chr1:147416212:+	CTD-2104P17.1	22015	chr17:19532865:+	INCL_NON_REF_SPLICE	YES	66	1	0.29	0.96	0.0276	0.2206	GPR89B->G_protein-coupled_receptor_89B,chr1:147400506-147465753:+,CTD-2104P17.1->chr17:19519102-19537138:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.96	0.2482	TRUE	0	0	0	1	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	20	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.0368	0.1838	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.2206	FALSE	344	821	44	306	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSDE1--RPL23	8	1	CSDE1	11307	chr1:115279435:-	RPL23	28424	chr17:37009360:-	INCL_NON_REF_SPLICE	NO	448	12	0.02	0.43	0.0735	0.0092	CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1,RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.43	0.0827	TRUE	0	0	0	1	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ENO1--EEF2	8	1	ENO1	11548	chr1:8923321:-	EEF2	24932	chr19:3976731:-	INCL_NON_REF_SPLICE	YES	6447	5693	0	0	0.0735	0.0092	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0827	FALSE	0	0	0	9	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	17	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	159	0	0.12	1	0.0368	0.1563	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.1931	FALSE	344	827	44	306	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0735	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0735	FALSE	462	80	0	856	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	8	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0735	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0735	FALSE	369	2501	205	193	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	6	3	GPR141	2513	chr7:37725186:+	NME8	15008	chr7:37889862:+	ONLY_REF_SPLICE	YES	18	0	0.33	1	0.0552	0.0276	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.0828	FALSE	8	2	0	2	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DPP7--PTMA	6	1	DPP7	4017	chr9:140006613:-	PTMA	10268	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	867	4	0.01	0.64	0.0552	0.0092	DPP7->chr9:140004994-140009629:-,dipeptidyl_peptidase_7,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.64	0.0644	FALSE	0	0	0	1	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	32	13	0.22	0.41	0.046	0.0368	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.41	0.0828	TRUE	267	562	48	632	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	12	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0.1103	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1379	FALSE	499	1288	110	792	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0.0368	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0828	FALSE	462	80	0	856	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0552	FALSE	369	2501	205	193	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0552	FALSE	369	2501	205	193	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0552	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0552	FALSE	292	1546	117	613	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0.0276	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0736	FALSE	344	821	44	306	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	4	6	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	6	0	0.62	1	0.0368	0.0552	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.092	FALSE	114	26	4	85	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	6	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	16	0	0.38	1	0.0368	0.0552	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.092	FALSE	344	827	44	306	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM211A--MT-CO3	5	1	FAM211A	8450	chr17:16344949:-	MT-CO3	11714	chrM:9412:+	INCL_NON_REF_SPLICE	YES	0	9718	1	0	0.046	0.0092	FAM211A->chr17:16344891-16395467:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0552	FALSE	0	0	0	7	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	4	4	EEF2	8854	chr19:3977458:-	RPS28	13630	chr19:8386413:+	INCL_NON_REF_SPLICE	YES	5760	0	0	1	0.0368	0.0368	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0736	FALSE	0	0	0	100	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	5	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.046	FALSE	369	2501	205	193	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNAS	5	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.046	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.046	TRUE	0	3	0	13	2	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALR--RPL6	4	2	CALR	3078	chr19:13051469:+	RPL6	12597	chr12:112846348:-	INCL_NON_REF_SPLICE	YES	3573	1655	0	0	0.0368	0.0184	CALR->calreticulin,chr19:13049392-13055303:+,RPL6->chr12:112842994-112856642:-,ribosomal_protein_L6	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0552	FALSE	0	0	0	1	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	6	MT-ND1	1291	chrM:3597:+	MT-RNR2	5001	chrM:1715:+	INCL_NON_REF_SPLICE	YES	12	0	0.43	1	0.0276	0.0552	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.0828	FALSE	114	26	4	85	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	6	MT-ND1	1409	chrM:3715:+	MT-RNR2	5520	chrM:2234:+	INCL_NON_REF_SPLICE	YES	38	9626	0.19	0	0.0276	0.0552	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.19	0.0828	FALSE	120	26	5	87	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	6	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	6	0	0.6	1	0.0276	0.0552	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.0828	FALSE	344	826	44	306	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	4	1	GPR141	2513	chr7:37725186:+	NME8	16484	chr7:37896876:+	ONLY_REF_SPLICE	YES	18	1	0.22	0.83	0.0368	0.0092	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.83	0.046	FALSE	7	5	0	3	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	FALSE	369	2501	205	193	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABCA2--RPS18	3	1	ABCA2	15388	chr9:139906142:-	RPS18	22926	chr6:33239868:+	INCL_NON_REF_SPLICE	YES	180	0	0.02	1	0.0276	0.0092	ABCA2->ATP_binding_cassette_subfamily_A_member_2,chr9:139901686-139923367:-,RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0368	TRUE	0	0	0	1	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPN7--MT-CO3	3	1	PTPN7	11353	chr1:202117737:-	MT-CO3	15995	chrM:9252:+	INCL_NON_REF_SPLICE	YES	619	0	0.01	1	0.0276	0.0092	PTPN7->Oncogene{Bushman},chr1:202116141-202130716:-,protein_tyrosine_phosphatase,_non-receptor_type_7,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0368	FALSE	0	0	0	1	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0.0092	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	FALSE	515	4851	409	746	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0276	FALSE	344	821	44	306	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0276	FALSE	499	1288	110	792	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	3	0	MT-TA	1020	chrM:5636:-	MT-TN	4113	chrM:5686:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0276	FALSE	369	2501	205	193	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	1	5	ABL1	1510	chr9:133589842:+	BCR	43197	chr22:23637211:+	ONLY_REF_SPLICE	YES	8	69	0.43	0.08	0.0092	0.046	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.43	0.0552	TRUE	0	0	0	6	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B2M--GNAS	2	1	B2M	1137	chr15:45003811:+	GNAS	25752	chr20:57470667:+	ONLY_REF_SPLICE	YES	60	394	0.05	0.01	0.0184	0.0092	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Whole_Blood=[count:8=pct:6.1],Blood=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6],Lung=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=18;pct=0.21%;dist=Whole_Blood=9,Lung=3,Pancreas=1,Minor_Salivary_Gland=1,Thyroid=1,Cells_-_EBV-transformed_lymphocytes=1,Muscle_-_Skeletal=1,Colon_-_Transverse=1},B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.0276	FALSE	14	13	1	7	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMTM8--CMTM7	2	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	18	90	0.14	0.03	0.0184	0.0092	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.14	0.0276	FALSE	118	557	29	88	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	2	1	GPR141	2513	chr7:37725186:+	NME8	26115	chr7:37927879:+	ONLY_REF_SPLICE	YES	18	3	0.14	0.5	0.0184	0.0092	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.5	0.0276	FALSE	0	1	0	1	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	41	0	0.07	1	0.0184	0.0092	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0276	FALSE	164	806	69	479	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EXD3--EHMT1	2	0	EXD3	1149	chr9:140317566:-	EHMT1	37413	chr9:140611078:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1},EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	3	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS7--STX8	2	0	GAS7	10425	chr17:9923094:-	STX8	47311	chr17:9281970:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GAS7->Oncogene{Bushman},chr17:9813926-10101868:-,growth_arrest_specific_7,STX8->chr17:9153788-9479908:-,syntaxin_8	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	2	0	GPR141	2513	chr7:37725186:+	NME8	28465	chr7:37936472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	FALSE	7	4	0	2	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYSM1--SRSF1	2	0	MYSM1	12420	chr1:59139245:-	SRSF1	30708	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	MYSM1->Myb_like,_SWIRM_and_MPN_domains_1,chr1:59120411-59165764:-,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--TRIM65	2	0	PPP1R12C	8950	chr19:55610152:-	TRIM65	20472	chr17:73888931:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,TRIM65->chr17:73876416-73893084:-,tripartite_motif_containing_65	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	1	0	1	1	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--UBB	2	0	RPS3	2292	chr11:75111821:+	UBB	14087	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,UBB->chr17:16284112-16286059:+,ubiquitin_B	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	6	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG8--WHSC1	2	0	SNHG8	1429	chr4:119200292:+	WHSC1	7425	chr4:1893893:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	1	1	1	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	2	0	SPON2	4412	chr4:1195057:-	CTBP1	30074	chr4:1222131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	1	0	0	4	0	TRUE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DBNL--RPL7	1	1	DBNL	1181	chr7:44084419:+	RPL7	24679	chr8:74205032:-	ONLY_REF_SPLICE	YES	80	21	0.02	0.09	0.0092	0.0092	DBNL->chr7:44084239-44109055:+,drebrin_like,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.09	0.0184	TRUE	0	0	0	1	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	1	1	GPR141	2513	chr7:37725186:+	NME8	24165	chr7:37923905:+	ONLY_REF_SPLICE	YES	18	6	0.1	0.25	0.0092	0.0092	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.25	0.0184	FALSE	3	3	0	3	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	1	1	GPR141	2513	chr7:37725186:+	NME8	18673	chr7:37902998:+	ONLY_REF_SPLICE	YES	18	3	0.1	0.4	0.0092	0.0092	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.4	0.0184	FALSE	0	0	0	2	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	P2RY8--ETHE1	1	1	P2RY8	1187	chrX:1655814:-	ETHE1	12504	chr19:44015718:-	ONLY_REF_SPLICE	YES	196	141	0.01	0.01	0.0092	0.0092	P2RY8->Oncogene{Bushman},chrX:1581465-1656000:-,chrY:1531465-1606000:-,purinergic_receptor_P2Y8,ETHE1->ETHE1,_persulfide_dioxygenase,chr19:44010871-44031396:-	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0092	0.0092	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	FALSE	192	492	57	212	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0092	0.0092	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	FALSE	275	511	55	178	0	FALSE	ACH-000321
MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0092	0.0092	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	FALSE	407	2205	196	549	0	FALSE	ACH-000321
NCIH2196_LUNG	MT-ND4--MT-ND4L	3020	38	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	72	0	0.98	1	31.8016	0.4002	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2196_LUNG	0.98	1	32.2018	FALSE	344	827	44	306	0	FALSE	ACH-000399
NCIH2196_LUNG	ZNF33A--RP11-393J16.4	77	12	ZNF33A	3703	chr10:38306314:+	RP11-393J16.4	18018	chr10:38281255:+	ONLY_REF_SPLICE	YES	41	0	0.68	1	0.8108	0.1264	LOCAL_REARRANGEMENT:+:[18183],ZNF33A->chr10:38299578-38354016:+,zinc_finger_protein_33A,RP11-393J16.4->chr10:38265753-38281395:+	NCIH2196_LUNG	0.68	1	0.9372	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	AP003900.6--AC008132.1	63	16	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	4	0	0.95	1	0.6634	0.1685	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH2196_LUNG	0.95	1	0.8319	TRUE	0	0	0	25	0	FALSE	ACH-000399
NCIH2196_LUNG	TIMM23B--LINC00843	57	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.6002	0.1369	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2196_LUNG	0.99	1	0.7371	TRUE	508	994	45	981	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-TA--MT-TC	40	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4212	0.0737	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2196_LUNG	1	1	0.4949	FALSE	462	80	0	856	0	FALSE	ACH-000399
NCIH2196_LUNG	RP4-565E6.1--HYDIN	34	9	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	4	2	0.91	0.96	0.358	0.0948	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH2196_LUNG	0.91	0.96	0.4528	TRUE	456	1387	91	133	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND6--MT-TE	35	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3686	0.0211	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2196_LUNG	1	1	0.3897	FALSE	499	1288	110	792	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND4--MT-ND4L	3	128	MT-ND4	1967	chrM:11726:+	MT-ND4L	5384	chrM:10475:+	INCL_NON_REF_SPLICE	YES	15756	0	0.01	1	0.0316	1.3479	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2196_LUNG	0.01	1	1.3795	FALSE	344	827	44	306	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND4--MT-ND4L	5	118	MT-ND4	1213	chrM:10972:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	41	0	0.75	1	0.0527	1.2426	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2196_LUNG	0.75	1	1.2953	FALSE	344	826	44	306	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND4--MT-ND4L	6	113	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	36	1	0.77	0.99	0.0632	1.1899	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2196_LUNG	0.77	0.99	1.2531	FALSE	344	826	44	306	0	FALSE	ACH-000399
NCIH2196_LUNG	DPH7--PTP4A3	34	0	DPH7	1297	chr9:140473091:-	PTP4A3	14726	chr8:142431487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.358	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:10=pct:2.7],Heart=[count:7=pct:2.8],Pituitary=[count:4=pct:7.7],Nerve=[count:2=pct:1.2],Esophagus=[count:2=pct:0.5],Colon=[count:2=pct:1.0],Lung=[count:2=pct:1.2],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Kidney=[count:1=pct:7.1],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},GTEx_v2:{count=46;pct=0.53%;dist=Artery_-_Tibial=9,Heart_-_Atrial_Appendage=9,Pituitary=6,Cells_-_EBV-transformed_lymphocytes=5,Artery_-_Aorta=3,Lung=2,Artery_-_Coronary=2,Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hypothalamus=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1,Testis=1},DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7,PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3	NCIH2196_LUNG	1	1	0.358	TRUE	29	213	5	17	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND4--MT-ND4L	3	123	MT-ND4	1531	chrM:11290:+	MT-ND4L	5417	chrM:10508:+	INCL_NON_REF_SPLICE	YES	1067	0	0.11	1	0.0316	1.2952	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2196_LUNG	0.11	1	1.3268	FALSE	344	827	44	306	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND4--MT-ND4L	5	112	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	15	1	0.89	0.99	0.0527	1.1794	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2196_LUNG	0.89	0.99	1.2321	FALSE	344	826	44	306	0	FALSE	ACH-000399
NCIH2196_LUNG	KAZN--FHAD1	30	9	KAZN	8963	chr1:15370655:+	FHAD1	50668	chr1:15653555:+	ONLY_REF_SPLICE	YES	14	1	0.74	0.97	0.3159	0.0948	KAZN->chr1:14925200-15444539:+,kazrin,_periplakin_interacting_protein,FHAD1->chr1:15573768-15726779:+,forkhead-associated_(FHA)_phosphopeptide_binding_domain_1	NCIH2196_LUNG	0.74	0.97	0.4107	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	ABCB8--CACNA1I	28	15	ABCB8	13216	chr7:150739195:+	CACNA1I	36045	chr22:40054157:+	ONLY_REF_SPLICE	YES	29	2	0.6	0.96	0.2948	0.158	ABCB8->ATP_binding_cassette_subfamily_B_member_8,Oncogene{Bushman},chr7:150725510-150744869:+,CACNA1I->calcium_voltage-gated_channel_subunit_alpha1_I,chr22:39966758-40085742:+	NCIH2196_LUNG	0.6	0.96	0.4528	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	ETV6--BCL2L14	30	7	ETV6	1307	chr12:11803094:+	BCL2L14	31171	chr12:12232233:+	ONLY_REF_SPLICE	YES	40	0	0.48	1	0.3159	0.0737	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,BCL2L14->BCL2_like_14,chr12:12202778-12364018:+	NCIH2196_LUNG	0.48	1	0.3896	TRUE	0	1	0	1	1	TRUE	ACH-000399
NCIH2196_LUNG	TIMM23--RP11-464F9.1	31	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	144	8	0.18	0.8	0.3264	0.0105	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2196_LUNG	0.18	0.8	0.3369	TRUE	519	3926	326	965	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND6--MT-TE	28	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.2948	0.1053	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2196_LUNG	0.93	1	0.4001	FALSE	499	1288	110	792	0	FALSE	ACH-000399
NCIH2196_LUNG	RP11-123O10.4--GRIP1	26	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2738	0.0737	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2196_LUNG	1	1	0.3475	FALSE	416	2512	207	587	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND4--MT-ND4L	4	86	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	7	0	0.93	1	0.0421	0.9056	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2196_LUNG	0.93	1	0.9477	FALSE	344	826	44	306	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND4--MT-ND4L	3	89	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	93	1	0.5	0.99	0.0316	0.9372	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2196_LUNG	0.5	0.99	0.9688	FALSE	344	827	44	306	0	FALSE	ACH-000399
NCIH2196_LUNG	RP11-680G10.1--GSE1	22	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	33	1	0.43	0.2317	0.0316	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2196_LUNG	0.43	1	0.2633	TRUE	465	1949	224	605	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND4--MT-ND4L	6	66	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	0	0.94	1	0.0632	0.695	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2196_LUNG	0.94	1	0.7582	FALSE	344	821	44	306	0	FALSE	ACH-000399
NCIH2196_LUNG	ZNF654--HMGB2	21	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2211	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2196_LUNG	1	1	0.2211	TRUE	0	0	0	518	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND6--MT-TE	18	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1895	0.0211	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2196_LUNG	1	1	0.2106	FALSE	499	1288	110	792	0	FALSE	ACH-000399
NCIH2196_LUNG	EIF2A--MED12L	12	11	EIF2A	10407	chr3:150286079:+	MED12L	25052	chr3:150873948:+	ONLY_REF_SPLICE	YES	106	3	0.18	0.88	0.1264	0.1158	{Klijn_CCL:Lung=1},EIF2A->chr3:150264465-150302029:+,eukaryotic_translation_initiation_factor_2A,MED12L->chr3:150803484-151154860:+,mediator_complex_subunit_12_like	NCIH2196_LUNG	0.18	0.88	0.2422	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	BEND3--PDSS2	14	0	BEND3	1180	chr6:107436294:-	PDSS2	25697	chr6:107475981:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1474	0	LOCAL_REARRANGEMENT:-:[37288],BEND3->BEN_domain_containing_3,chr6:107386386-107436473:-,PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2	NCIH2196_LUNG	1	1	0.1474	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	MT-ATP6--MT-CO1	13	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10169	26976	0	0	0.1369	0.0316	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2196_LUNG	0	0	0.1685	FALSE	183	104	9	328	0	FALSE	ACH-000399
NCIH2196_LUNG	RERE--ENO1	10	15	RERE	8908	chr1:8674620:-	ENO1	42962	chr1:8934976:-	ONLY_REF_SPLICE	YES	119	502	0.17	0.05	0.1053	0.158	LOCAL_REARRANGEMENT:-:[43359],RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	NCIH2196_LUNG	0.05	0.17	0.2633	TRUE	0	1	0	1	1	TRUE	ACH-000399
NCIH2196_LUNG	MT-ND4--MT-ND4L	7	26	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8608	0	0	1	0.0737	0.2738	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2196_LUNG	0	1	0.3475	FALSE	344	827	44	306	0	FALSE	ACH-000399
NCIH2196_LUNG	ANKHD1--CYSTM1	12	5	ANKHD1	9855	chr5:139838940:+	CYSTM1	47050	chr5:139622890:+	ONLY_REF_SPLICE	YES	110	448	0.13	0.04	0.1264	0.0527	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,CYSTM1->chr5:139554227-139661637:+,cysteine_rich_transmembrane_module_containing_1	NCIH2196_LUNG	0.04	0.13	0.1791	TRUE	0	0	0	1	0	FALSE	ACH-000399
NCIH2196_LUNG	NDUFAF6--RP11-267M23.7	11	7	NDUFAF6	1161	chr8:95908155:+	RP11-267M23.7	36149	chr8:95606649:+	INCL_NON_REF_SPLICE	YES	15	0	0.55	1	0.1158	0.0737	NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+,RP11-267M23.7->chr8:95606639-95606829:+	NCIH2196_LUNG	0.55	1	0.1895	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	RP11-680G10.1--GSE1	12	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.83	0.1264	0.0316	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2196_LUNG	0.83	1	0.158	TRUE	458	1351	185	561	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ATP6--MT-CO1	12	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	9979	26024	0	0	0.1264	0.0211	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2196_LUNG	0	0	0.1475	FALSE	183	104	9	328	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND4--MT-ND4L	3	38	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	81	0	0.34	1	0.0316	0.4002	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2196_LUNG	0.34	1	0.4318	FALSE	344	827	44	306	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ATP6--MT-CO1	11	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12447	26574	0	0	0.1158	0.0421	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2196_LUNG	0	0	0.1579	FALSE	183	104	9	328	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-TA--MT-TC	12	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1264	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2196_LUNG	1	1	0.1264	FALSE	462	80	0	856	0	FALSE	ACH-000399
NCIH2196_LUNG	AP003900.6--AC008132.1	9	11	AP003900.6	1122	chr21:11169841:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	4	0	0.83	1	0.0948	0.1158	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH2196_LUNG	0.83	1	0.2106	TRUE	0	0	0	25	0	FALSE	ACH-000399
NCIH2196_LUNG	C15orf57--CBX3	10	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	35	42	0.33	0.29	0.1053	0.0737	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2196_LUNG	0.29	0.33	0.179	TRUE	267	562	48	632	0	FALSE	ACH-000399
NCIH2196_LUNG	LIMCH1--UCHL1	9	10	LIMCH1	2330	chr4:41362953:+	UCHL1	52640	chr4:41258610:+	ONLY_REF_SPLICE	YES	203	0	0.09	1	0.0948	0.1053	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[91152],LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,UCHL1->chr4:41258430-41270472:+,ubiquitin_C-terminal_hydrolase_L1	NCIH2196_LUNG	0.09	1	0.2001	TRUE	0	1	0	2	1	TRUE	ACH-000399
NCIH2196_LUNG	KIAA0232--MRFAP1	10	5	KIAA0232	13721	chr4:6865910:+	MRFAP1	24050	chr4:6642555:+	ONLY_REF_SPLICE	YES	61	602	0.2	0.02	0.1053	0.0527	KIAA0232->KIAA0232,chr4:6783102-6885897:+,MRFAP1->Morf4_family_associated_protein_1,chr4:6641818-6644472:+	NCIH2196_LUNG	0.02	0.2	0.158	TRUE	0	0	0	1	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND4--MT-ND4L	3	33	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	5	1	0.88	0.97	0.0316	0.3475	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2196_LUNG	0.88	0.97	0.3791	FALSE	344	821	44	306	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND4--MT-ND4L	5	25	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	40	0	0.43	1	0.0527	0.2633	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2196_LUNG	0.43	1	0.316	FALSE	344	826	44	306	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-TA--MT-TC	9	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0948	0.0737	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2196_LUNG	1	1	0.1685	FALSE	462	80	0	856	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND4--MT-ND4L	4	26	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	587	0	0.05	1	0.0421	0.2738	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2196_LUNG	0.05	1	0.3159	FALSE	344	827	44	306	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND6--MT-TE	7	14	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0737	0.1474	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2196_LUNG	0.88	1	0.2211	FALSE	499	1288	110	792	0	FALSE	ACH-000399
NCIH2196_LUNG	RP11-347C18.3--RP11-267M23.7	10	2	RP11-347C18.3	1773	chr8:95963037:+	RP11-267M23.7	5371	chr8:95606649:+	INCL_NON_REF_SPLICE	YES	8	0	0.6	1	0.1053	0.0211	RP11-347C18.3->chr8:95962265-95963624:+,RP11-267M23.7->chr8:95606639-95606829:+	NCIH2196_LUNG	0.6	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	NCKAP5L--RACGAP1	10	0	NCKAP5L	1429	chr12:50222105:-	RACGAP1	25180	chr12:50410502:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1053	0	NCKAP5L->NCK_associated_protein_5_like,chr12:50184929-50222533:-,RACGAP1->Rac_GTPase_activating_protein_1,chr12:50370706-50426919:-	NCIH2196_LUNG	1	1	0.1053	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	MT-ND4--MT-ND4L	6	15	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	81	0	0.21	1	0.0632	0.158	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2196_LUNG	0.21	1	0.2212	FALSE	344	827	44	306	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND4--MT-ND4L	3	25	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	74	0	0.27	1	0.0316	0.2633	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2196_LUNG	0.27	1	0.2949	FALSE	344	827	44	306	0	FALSE	ACH-000399
NCIH2196_LUNG	RP11-96H19.1--RP11-446N19.1	7	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.94	0.94	0.0737	0.0842	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2196_LUNG	0.94	0.94	0.1579	FALSE	515	4851	409	746	0	FALSE	ACH-000399
NCIH2196_LUNG	KIAA1109--RP11-362K2.2	8	3	KIAA1109	20135	chr4:123132250:+	RP11-362K2.2	103141	chr12:59206196:+	ONLY_REF_SPLICE	YES	15	1	0.42	0.92	0.0842	0.0316	KIAA1109->KIAA1109,chr4:123073488-123283913:+,RP11-362K2.2->chr12:58937907-59206842:+	NCIH2196_LUNG	0.42	0.92	0.1158	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	RP11-114H23.1--RP11-114H23.2	8	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.0842	0.0316	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH2196_LUNG	0.79	1	0.1158	FALSE	81	155	12	160	0	FALSE	ACH-000399
NCIH2196_LUNG	AP003900.6--AC008132.1	4	17	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	8	0	0.72	1	0.0421	0.179	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH2196_LUNG	0.72	1	0.2211	TRUE	1	1	0	28	1	FALSE	ACH-000399
NCIH2196_LUNG	RP11-120D5.1--MID1	8	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	27	0.82	0.25	0.0842	0.0105	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2196_LUNG	0.25	0.82	0.0947	FALSE	16	356	14	466	0	FALSE	ACH-000399
NCIH2196_LUNG	C1orf194--UQCR10	7	4	C1orf194	3284	chr1:109650635:-	UQCR10	8361	chr22:30163372:+	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0737	0.0421	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.41%,GTEx_FI:{Testis=[count:16=pct:15.2],Pituitary=[count:4=pct:7.7],Lung=[count:4=pct:2.4],Brain=[count:3=pct:0.5],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Fallopian_Tube=[count:1=pct:16.7],Thyroid=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=13;pct=0.15%;dist=Testis=12,Adipose_-_Subcutaneous=1},C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	NCIH2196_LUNG	0.85	1	0.1158	TRUE	26	6	0	14	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND6--MT-TE	4	15	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.0421	0.158	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2196_LUNG	0.86	1	0.2001	FALSE	499	1288	110	792	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ATP6--MT-CO1	6	5	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	10391	24035	0	0	0.0632	0.0527	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2196_LUNG	0	0	0.1159	FALSE	183	104	9	328	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND6--MT-TE	5	9	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0.0948	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2196_LUNG	1	1	0.1475	FALSE	499	1288	110	792	0	FALSE	ACH-000399
NCIH2196_LUNG	AP003900.6--AC008132.1	4	12	AP003900.6	3299	chr21:11174002:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	8	0	0.67	1	0.0421	0.1264	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH2196_LUNG	0.67	1	0.1685	TRUE	1	1	0	28	1	FALSE	ACH-000399
NCIH2196_LUNG	NRIP1--AF127936.7	5	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	32	0	0.27	1	0.0527	0.0737	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2196_LUNG	0.27	1	0.1264	FALSE	164	806	69	479	0	FALSE	ACH-000399
NCIH2196_LUNG	CBX1--CDK5RAP3	6	2	CBX1	1254	chr17:46178630:-	CDK5RAP3	20201	chr17:46055198:+	ONLY_REF_SPLICE	YES	713	201	0.01	0.04	0.0632	0.0211	LOCAL_INVERSION:-:+:[88274],CBX1->chr17:46147414-46178883:-,chromobox_1,CDK5RAP3->CDK5_regulatory_subunit_associated_protein_3,chr17:46045176-46059140:+	NCIH2196_LUNG	0.01	0.04	0.0843	FALSE	0	0	0	1	0	FALSE	ACH-000399
NCIH2196_LUNG	ETV6--BCL2L14	6	2	ETV6	1307	chr12:11803094:+	BCL2L14	32611	chr12:12240147:+	ONLY_REF_SPLICE	YES	40	9	0.17	0.47	0.0632	0.0211	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,BCL2L14->BCL2_like_14,chr12:12202778-12364018:+	NCIH2196_LUNG	0.17	0.47	0.0843	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	KAZN--FHAD1	4	10	KAZN	8963	chr1:15370655:+	FHAD1	46956	chr1:15644320:+	ONLY_REF_SPLICE	YES	14	0	0.5	1	0.0421	0.1053	KAZN->chr1:14925200-15444539:+,kazrin,_periplakin_interacting_protein,FHAD1->chr1:15573768-15726779:+,forkhead-associated_(FHA)_phosphopeptide_binding_domain_1	NCIH2196_LUNG	0.5	1	0.1474	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	MT-ND6--MT-TE	3	14	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.85	1	0.0316	0.1474	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2196_LUNG	0.85	1	0.179	FALSE	499	1288	110	792	0	FALSE	ACH-000399
NCIH2196_LUNG	RPS6KB1--VMP1	5	6	RPS6KB1	1240	chr17:57970686:+	VMP1	32885	chr17:57842332:+	ONLY_REF_SPLICE	YES	36	141	0.23	0.07	0.0527	0.0632	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH2196_LUNG	0.07	0.23	0.1159	TRUE	0	2	0	6	2	TRUE	ACH-000399
NCIH2196_LUNG	AP000525.9--LA16c-60G3.6	6	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	7	0	0.5	1	0.0632	0.0105	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH2196_LUNG	0.5	1	0.0737	TRUE	0	42	0	133	42	FALSE	ACH-000399
NCIH2196_LUNG	MT-ATP6--MT-CO1	3	13	MT-ATP6	1462	chrM:8988:+	MT-CO1	5224	chrM:6446:+	INCL_NON_REF_SPLICE	YES	8626	24423	0	0	0.0316	0.1369	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2196_LUNG	0	0	0.1685	FALSE	183	104	9	328	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ATP6--MT-CO1	3	13	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	5974	24601	0	0	0.0316	0.1369	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2196_LUNG	0	0	0.1685	FALSE	183	104	9	328	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND6--MT-TE	3	13	MT-ND6	1199	chrM:14475:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	3	0	0.84	1	0.0316	0.1369	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2196_LUNG	0.84	1	0.1685	FALSE	499	1288	110	792	0	FALSE	ACH-000399
NCIH2196_LUNG	RERE--ENO1	4	8	RERE	7782	chr1:8684369:-	ENO1	42962	chr1:8934976:-	ONLY_REF_SPLICE	YES	140	502	0.08	0.02	0.0421	0.0842	LOCAL_REARRANGEMENT:-:[43359],RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	NCIH2196_LUNG	0.02	0.08	0.1263	TRUE	0	1	0	1	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND6--MT-TE	3	11	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.82	1	0.0316	0.1158	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2196_LUNG	0.82	1	0.1474	FALSE	499	1288	110	792	0	FALSE	ACH-000399
NCIH2196_LUNG	KIAA1109--RP11-362K2.2	4	6	KIAA1109	20135	chr4:123132250:+	RP11-362K2.2	101530	chr12:59199723:+	ONLY_REF_SPLICE	YES	15	0	0.4	1	0.0421	0.0632	KIAA1109->KIAA1109,chr4:123073488-123283913:+,RP11-362K2.2->chr12:58937907-59206842:+	NCIH2196_LUNG	0.4	1	0.1053	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	MT-ATP6--MT-CO1	5	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10161	26574	0	0	0.0527	0.0211	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2196_LUNG	0	0	0.0738	FALSE	183	104	9	328	0	FALSE	ACH-000399
NCIH2196_LUNG	RP11-96H19.1--RP11-446N19.1	3	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0316	0.1053	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2196_LUNG	0.93	1	0.1369	FALSE	407	2205	196	549	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND6--MT-TE	3	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.0948	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2196_LUNG	1	1	0.1264	FALSE	499	1288	110	792	0	FALSE	ACH-000399
NCIH2196_LUNG	RP11-120D5.1--MID1	5	1	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	4	27	0.6	0.18	0.0527	0.0105	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2196_LUNG	0.18	0.6	0.0632	FALSE	0	9	0	55	0	FALSE	ACH-000399
NCIH2196_LUNG	RP11-444D3.1--SOX5	5	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	17	1	0.26	0.0527	0.0105	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH2196_LUNG	0.26	1	0.0632	TRUE	477	1352	189	275	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ATP6--MT-CO1	3	8	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3386	27402	0	0	0.0316	0.0842	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2196_LUNG	0	0	0.1158	FALSE	183	104	9	328	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2196_LUNG	1	1	0.0527	FALSE	499	1288	110	792	0	FALSE	ACH-000399
NCIH2196_LUNG	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0527	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2196_LUNG	1	1	0.0527	FALSE	292	1546	117	613	0	FALSE	ACH-000399
NCIH2196_LUNG	TEAD1--PARVA	5	0	TEAD1	4496	chr11:12785981:+	PARVA	32787	chr11:12495292:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0527	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	NCIH2196_LUNG	1	1	0.0527	TRUE	3	5	0	10	0	FALSE	ACH-000399
NCIH2196_LUNG	SETD7--MAML3	4	3	SETD7	19923	chr4:140439039:-	MAML3	33638	chr4:140812121:-	ONLY_REF_SPLICE	YES	54	20	0.11	0.26	0.0421	0.0316	SETD7->SET_domain_containing_lysine_methyltransferase_7,chr4:140417095-140527853:-,MAML3->chr4:140637907-141075338:-,mastermind_like_transcriptional_coactivator_3	NCIH2196_LUNG	0.11	0.26	0.0737	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	DPYSL3--JAKMIP2	4	1	DPYSL3	1579	chr5:146889041:-	JAKMIP2	30086	chr5:147030110:-	ONLY_REF_SPLICE	YES	581	110	0.01	0.04	0.0421	0.0105	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[78371],DPYSL3->chr5:146770374-146889619:-,dihydropyrimidinase_like_3,JAKMIP2->chr5:146967990-147162338:-,janus_kinase_and_microtubule_interacting_protein_2	NCIH2196_LUNG	0.01	0.04	0.0526	FALSE	0	0	0	1	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ATP6--MT-CO1	3	4	MT-ATP6	1153	chrM:8679:+	MT-CO1	5318	chrM:6540:+	INCL_NON_REF_SPLICE	YES	11925	25854	0	0	0.0316	0.0421	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2196_LUNG	0	0	0.0737	FALSE	183	104	9	328	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2196_LUNG	1	1	0.0421	FALSE	499	1288	110	792	0	FALSE	ACH-000399
NCIH2196_LUNG	RPS6KB1--VMP1	3	4	RPS6KB1	1240	chr17:57970686:+	VMP1	32966	chr17:57842413:+	ONLY_REF_SPLICE	YES	36	114	0.16	0.06	0.0316	0.0421	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH2196_LUNG	0.06	0.16	0.0737	TRUE	0	2	0	6	2	TRUE	ACH-000399
NCIH2196_LUNG	AP003900.6--AC008132.1	1	11	AP003900.6	2187	chr21:11172043:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	9	0	0.57	1	0.0105	0.1158	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH2196_LUNG	0.57	1	0.1263	TRUE	0	0	0	12	0	TRUE	ACH-000399
NCIH2196_LUNG	KAZN--FHAD1	1	10	KAZN	8963	chr1:15370655:+	FHAD1	48061	chr1:15650948:+	ONLY_REF_SPLICE	NO	14	1	0.44	0.92	0.0105	0.1053	KAZN->chr1:14925200-15444539:+,kazrin,_periplakin_interacting_protein,FHAD1->chr1:15573768-15726779:+,forkhead-associated_(FHA)_phosphopeptide_binding_domain_1	NCIH2196_LUNG	0.44	0.92	0.1158	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	9317	24560	0	0	0.0316	0.0211	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2196_LUNG	0	0	0.0527	FALSE	183	104	9	328	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	10161	23825	0	0	0.0316	0.0211	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2196_LUNG	0	0	0.0527	FALSE	183	104	9	328	0	FALSE	ACH-000399
NCIH2196_LUNG	TMEM14B--SMIM13	3	2	TMEM14B	5163	chr6:10755465:+	SMIM13	22604	chr6:11134636:+	ONLY_REF_SPLICE	YES	471	12	0.01	0.29	0.0316	0.0211	TMEM14B->chr6:10747992-10852986:+,transmembrane_protein_14B,SMIM13->chr6:11094266-11138964:+,small_integral_membrane_protein_13	NCIH2196_LUNG	0.01	0.29	0.0527	FALSE	0	0	0	1	0	FALSE	ACH-000399
NCIH2196_LUNG	MT-ND4--MT-ND4L	3	1	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0316	0.0105	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2196_LUNG	0.67	1	0.0421	FALSE	344	821	44	306	0	FALSE	ACH-000399
NCIH2196_LUNG	NRIP1--AF127936.7	3	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.17	1	0.0316	0.0105	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2196_LUNG	0.17	1	0.0421	FALSE	125	705	46	456	0	FALSE	ACH-000399
NCIH2196_LUNG	WBP2--MT-ATP8	3	1	WBP2	9236	chr17:73842590:-	MT-ATP8	13153	chrM:8472:+	INCL_NON_REF_SPLICE	YES	210	45	0.02	0.08	0.0316	0.0105	WBP2->WW_domain_binding_protein_2,chr17:73841780-73852588:-,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2196_LUNG	0.02	0.08	0.0421	FALSE	0	0	0	3	0	FALSE	ACH-000399
NCIH2196_LUNG	ETV6--BCL2L14	1	8	ETV6	3594	chr12:11905513:+	BCL2L14	22875	chr12:12204730:+	ONLY_REF_SPLICE	YES	53	0	0.15	1	0.0105	0.0842	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,BCL2L14->BCL2_like_14,chr12:12202778-12364018:+	NCIH2196_LUNG	0.15	1	0.0947	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	NRG1-IT1--NRG1-IT2	3	0	NRG1-IT1	2253	chr8:31887001:+	NRG1-IT2	15465	chr8:32144617:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	NEIGHBORS[31907],NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+,NRG1-IT2->chr8:32028898-32145082:+	NCIH2196_LUNG	1	1	0.0316	FALSE	3	1	0	5	0	FALSE	ACH-000399
NCIH2196_LUNG	PIGU--NCOA6	3	0	PIGU	8245	chr20:33203846:-	NCOA6	44726	chr20:33303169:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:-:[19812],PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6	NCIH2196_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	RPS6KB1--VMP1	2	4	RPS6KB1	1240	chr17:57970686:+	VMP1	34053	chr17:57851115:+	ONLY_REF_SPLICE	YES	36	125	0.14	0.05	0.0211	0.0421	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH2196_LUNG	0.05	0.14	0.0632	TRUE	0	3	0	2	0	FALSE	ACH-000399
NCIH2196_LUNG	UBAP1--UBE2R2	3	0	UBAP1	8073	chr9:34242106:+	UBE2R2	17274	chr9:33900172:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Muscle=[count:6=pct:2.6],Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4]},GTEx_v2:{count=2;pct=0.02%;dist=Vagina=1,Muscle_-_Skeletal=1},UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	NCIH2196_LUNG	1	1	0.0316	TRUE	0	1	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	CCDC154--IFT140	2	2	CCDC154	4659	chr16:1488620:-	IFT140	43655	chr16:1561151:-	ONLY_REF_SPLICE	YES	3	26	0.57	0.13	0.0211	0.0211	LOCAL_REARRANGEMENT:-:[65871],CCDC154->chr16:1484384-1494557:-,coiled-coil_domain_containing_154,IFT140->chr16:1560428-1662111:-,intraflagellar_transport_140	NCIH2196_LUNG	0.13	0.57	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	NRG1--NRG1-IT1	2	2	NRG1	2344	chr8:31498245:+	NRG1-IT1	37780	chr8:31996731:+	ONLY_REF_SPLICE	YES	36	4	0.1	0.5	0.0211	0.0211	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+	NCIH2196_LUNG	0.1	0.5	0.0422	TRUE	0	3	0	4	3	TRUE	ACH-000399
NCIH2196_LUNG	PVT1--SNTB1	2	2	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	26	0	0.13	1	0.0211	0.0211	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH2196_LUNG	0.13	1	0.0422	TRUE	0	0	0	25	0	FALSE	ACH-000399
NCIH2196_LUNG	REV3L--FYN	2	2	REV3L	3094	chr6:111793216:-	FYN	67236	chr6:112035646:-	ONLY_REF_SPLICE	YES	37	123	0.1	0.03	0.0211	0.0211	GTEx_FI:{Skin=[count:2=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Cells_-_Transformed_fibroblasts=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-	NCIH2196_LUNG	0.03	0.1	0.0422	TRUE	0	0	0	1	0	FALSE	ACH-000399
NCIH2196_LUNG	REV3L--TRAF3IP2	2	2	REV3L	5391	chr6:111737486:-	TRAF3IP2	51730	chr6:111913297:-	ONLY_REF_SPLICE	YES	50	32	0.07	0.11	0.0211	0.0211	LOCAL_REARRANGEMENT:-:[72739],REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,TRAF3IP2->TRAF3_interacting_protein_2,chr6:111877657-111927481:-	NCIH2196_LUNG	0.07	0.11	0.0422	TRUE	0	0	0	1	0	FALSE	ACH-000399
NCIH2196_LUNG	DPYSL3--JAKMIP2	2	1	DPYSL3	5010	chr5:146833112:-	JAKMIP2	30086	chr5:147030110:-	ONLY_REF_SPLICE	YES	945	110	0	0.03	0.0211	0.0105	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[78371],DPYSL3->chr5:146770374-146889619:-,dihydropyrimidinase_like_3,JAKMIP2->chr5:146967990-147162338:-,janus_kinase_and_microtubule_interacting_protein_2	NCIH2196_LUNG	0	0.03	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000399
NCIH2196_LUNG	MKL2--STAT5B	2	1	MKL2	20796	chr16:14312855:+	STAT5B	42748	chr17:40384155:-	ONLY_REF_SPLICE	YES	89	1	0.03	0.75	0.0211	0.0105	MKL2->MKL1/myocardin_like_2,chr16:14165178-14360630:+,STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B	NCIH2196_LUNG	0.03	0.75	0.0316	TRUE	0	0	0	1	0	FALSE	ACH-000399
NCIH2196_LUNG	RP11-114H23.1--RP11-114H23.2	2	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	3	10	0.5	0.23	0.0211	0.0105	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH2196_LUNG	0.23	0.5	0.0316	FALSE	81	155	12	160	0	FALSE	ACH-000399
NCIH2196_LUNG	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0211	0.0105	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2196_LUNG	1	1	0.0316	FALSE	93	270	15	244	0	FALSE	ACH-000399
NCIH2196_LUNG	ANKHD1--CYSTM1	2	0	ANKHD1	1460	chr5:139781858:+	CYSTM1	47050	chr5:139622890:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,CYSTM1->chr5:139554227-139661637:+,cysteine_rich_transmembrane_module_containing_1	NCIH2196_LUNG	1	1	0.0211	TRUE	1	2	1	5	0	TRUE	ACH-000399
NCIH2196_LUNG	ANKRD36C--ATP6V0B	2	0	ANKRD36C	1282	chr2:96657260:-	ATP6V0B	69657	chr1:44441762:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ANKRD36C->ankyrin_repeat_domain_36C,chr2:96514587-96657541:-,ATP6V0B->ATPase_H+_transporting_V0_subunit_b,chr1:44440159-44443967:+	NCIH2196_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	B3GNTL1--MED23	2	0	B3GNTL1	2770	chr17:81006347:-	MED23	45427	chr6:131917828:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,MED23->chr6:131895106-131949369:-,mediator_complex_subunit_23	NCIH2196_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	CTD-2281E23.2--DLGAP2	2	0	CTD-2281E23.2	3418	chr8:1208883:+	DLGAP2	8510	chr8:1449532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_FI:{Testis=[count:34=pct:32.4],Brain=[count:24=pct:3.6],Pituitary=[count:4=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Thyroid=[count:2=pct:1.1]},CTD-2281E23.2->chr8:1054882-1212580:+,DLGAP2->chr8:1449532-1656642:+,discs_large_homolog_associated_protein_2	NCIH2196_LUNG	1	1	0.0211	TRUE	49	61	1	13	0	FALSE	ACH-000399
NCIH2196_LUNG	GOLGA8A--ZC3H13	2	0	GOLGA8A	15953	chr15:34692913:-	ZC3H13	40862	chr13:46577471:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	NCIH2196_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	KIAA0232--MRFAP1	2	0	KIAA0232	13721	chr4:6865910:+	MRFAP1	24952	chr4:6643457:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	KIAA0232->KIAA0232,chr4:6783102-6885897:+,MRFAP1->Morf4_family_associated_protein_1,chr4:6641818-6644472:+	NCIH2196_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	KIAA1958--HSDL2	2	0	KIAA1958	1272	chr9:115249398:+	HSDL2	32584	chr9:115221729:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:+:[14437],KIAA1958->KIAA1958,chr9:115249127-115431677:+,HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2	NCIH2196_LUNG	1	1	0.0211	TRUE	0	1	0	2	1	TRUE	ACH-000399
NCIH2196_LUNG	LINC01014--KCNMB2	2	0	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH2196_LUNG	1	1	0.0211	FALSE	12	33	18	33	0	FALSE	ACH-000399
NCIH2196_LUNG	RBM47--APBB2	2	0	RBM47	2480	chr4:40631413:-	APBB2	49981	chr4:40825776:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	NCIH2196_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	REPS1--HECA	2	0	REPS1	1732	chr6:139308667:-	HECA	34072	chr6:139495522:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},REPS1->RALBP1_associated_Eps_domain_containing_1,chr6:139224630-139309398:-,HECA->chr6:139456249-139501939:+,hdc_homolog,_cell_cycle_regulator	NCIH2196_LUNG	1	1	0.0211	TRUE	1	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	RP11-495P10.2--RP11-403I13.4	2	0	RP11-495P10.2	1210	chr1:147931724:-	RP11-403I13.4	10510	chr1:149239868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_FI:{Brain=[count:4=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Breast=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Fallopian_Tube=[count:1=pct:16.7]},RP11-495P10.2->chr1:147835127-147931933:-,RP11-403I13.4->chr1:149239531-149265510:+	NCIH2196_LUNG	1	1	0.0211	TRUE	8	0	0	5	0	FALSE	ACH-000399
NCIH2196_LUNG	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	NCIH2196_LUNG	1	1	0.0211	TRUE	0	1	0	17	0	TRUE	ACH-000399
NCIH2196_LUNG	STRBP--DENND1A	2	0	STRBP	21385	chr9:125895124:-	DENND1A	46838	chr9:126345549:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	STRBP->chr9:125871779-126030855:-,spermatid_perinuclear_RNA_binding_protein,DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-	NCIH2196_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000399
NCIH2196_LUNG	TYMS--SEPT9	2	0	TYMS	4286	chr18:662320:+	SEPT9	45878	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	{Klijn_CCL:Lung=1,Urinary_Bladder=1},TYMS->chr18:657604-673578:+,thymidylate_synthetase,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	NCIH2196_LUNG	1	1	0.0211	TRUE	0	9	0	5	1	TRUE	ACH-000399
NCIH2196_LUNG	RP11-114H23.1--RP11-114H23.2	1	3	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	NO	3	0	0.57	1	0.0105	0.0316	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH2196_LUNG	0.57	1	0.0421	FALSE	5	9	0	20	0	FALSE	ACH-000399
NCIH2196_LUNG	SGCE--PEG10	1	3	SGCE	1220	chr7:94285302:-	PEG10	20543	chr7:94292646:+	ONLY_REF_SPLICE	YES	266	800	0.01	0	0.0105	0.0316	LOCAL_INVERSION:-:+:[116],SGCE->chr7:94214542-94285521:-,sarcoglycan_epsilon,PEG10->Oncogene{Bushman},chr7:94285637-94299007:+,paternally_expressed_10	NCIH2196_LUNG	0	0.01	0.0421	FALSE	0	1	0	2	1	FALSE	ACH-000399
NCIH2196_LUNG	CMTM8--CMTM7	1	2	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	61	23	0.05	0.12	0.0105	0.0211	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	NCIH2196_LUNG	0.05	0.12	0.0316	FALSE	118	557	29	88	0	FALSE	ACH-000399
NCIH2196_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	5	19	0.38	0.14	0.0105	0.0211	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2196_LUNG	0.14	0.38	0.0316	FALSE	0	5	0	14	0	FALSE	ACH-000399
NCIH2196_LUNG	RPA3-AS1--ICA1	1	2	RPA3-AS1	3140	chr7:7713084:+	ICA1	35643	chr7:8167772:-	ONLY_REF_SPLICE	YES	75	218	0.04	0.01	0.0105	0.0211	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},RPA3-AS1->chr7:7680342-8043689:+,ICA1->chr7:8152814-8302317:-,islet_cell_autoantigen_1	NCIH2196_LUNG	0.01	0.04	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000399
NCIH2196_LUNG	RPA3-AS1--ICA1	1	2	RPA3-AS1	3140	chr7:7713084:+	ICA1	20809	chr7:8275635:-	ONLY_REF_SPLICE	NO	75	80	0.04	0.04	0.0105	0.0211	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},RPA3-AS1->chr7:7680342-8043689:+,ICA1->chr7:8152814-8302317:-,islet_cell_autoantigen_1	NCIH2196_LUNG	0.04	0.04	0.0316	TRUE	0	0	0	1	0	FALSE	ACH-000399
NCIH2196_LUNG	RPA3-AS1--ICA1	1	2	RPA3-AS1	9814	chr7:7841374:+	ICA1	20809	chr7:8275635:-	ONLY_REF_SPLICE	YES	56	80	0.05	0.04	0.0105	0.0211	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},RPA3-AS1->chr7:7680342-8043689:+,ICA1->chr7:8152814-8302317:-,islet_cell_autoantigen_1	NCIH2196_LUNG	0.04	0.05	0.0316	TRUE	0	0	0	1	0	FALSE	ACH-000399
NCIH2196_LUNG	CADM2--GBE1	1	1	CADM2	1688	chr3:85008819:+	GBE1	28412	chr3:81720104:-	ONLY_REF_SPLICE	NO	12	44	0.14	0.04	0.0105	0.0105	CADM2->cell_adhesion_molecule_2,chr3:85008132-86123579:+,GBE1->chr3:81538850-81811312:-,glucan_(1,4-alpha-),_branching_enzyme_1	NCIH2196_LUNG	0.04	0.14	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000399
NCIH2196_LUNG	DTNA--NOL4	1	1	DTNA	1225	chr18:32073478:+	NOL4	60551	chr18:31709984:-	ONLY_REF_SPLICE	YES	54	142	0.04	0.01	0.0105	0.0105	DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha,NOL4->chr18:31431064-31804916:-,nucleolar_protein_4	NCIH2196_LUNG	0.01	0.04	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000399
NCIH2196_LUNG	EIF1AY--SRP9	1	1	EIF1AY	1163	chrY:22737773:+	SRP9	13181	chr1:225965637:+	ONLY_REF_SPLICE	YES	198	61	0.01	0.03	0.0105	0.0105	EIF1AY->chrY:22737611-22755040:+,eukaryotic_translation_initiation_factor_1A,_Y-linked,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	NCIH2196_LUNG	0.01	0.03	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000399
NCIH2196_LUNG	FRS2--RAB3IP	1	1	FRS2	1182	chr12:69864310:+	RAB3IP	25899	chr12:70149164:+	ONLY_REF_SPLICE	YES	68	257	0.03	0.01	0.0105	0.0105	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	NCIH2196_LUNG	0.01	0.03	0.021	FALSE	0	2	0	3	1	FALSE	ACH-000399
NCIH2196_LUNG	HIF1A--PRKCH	1	1	HIF1A	1327	chr14:62162557:+	PRKCH	48659	chr14:61952220:+	ONLY_REF_SPLICE	NO	413	312	0	0.01	0.0105	0.0105	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	NCIH2196_LUNG	0	0.01	0.021	FALSE	1	15	1	9	1	FALSE	ACH-000399
NCIH2196_LUNG	LIMCH1--UCHL1	1	1	LIMCH1	1197	chr4:41361820:+	UCHL1	52640	chr4:41258610:+	ONLY_REF_SPLICE	NO	27	0	0.07	1	0.0105	0.0105	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[91152],LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,UCHL1->chr4:41258430-41270472:+,ubiquitin_C-terminal_hydrolase_L1	NCIH2196_LUNG	0.07	1	0.021	TRUE	0	1	0	1	1	TRUE	ACH-000399
NCIH2196_LUNG	NCOA3--ZMYND8	1	1	NCOA3	2242	chr20:46212005:+	ZMYND8	37177	chr20:45938948:-	ONLY_REF_SPLICE	NO	75	41	0.03	0.05	0.0105	0.0105	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8	NCIH2196_LUNG	0.03	0.05	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000399
NCIH2196_LUNG	REV3L--FYN	1	1	REV3L	1966	chr6:111803953:-	FYN	78912	chr6:111995833:-	ONLY_REF_SPLICE	YES	29	193	0.06	0.01	0.0105	0.0105	GTEx_FI:{Skin=[count:2=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Cells_-_Transformed_fibroblasts=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-	NCIH2196_LUNG	0.01	0.06	0.021	FALSE	2	6	0	2	0	FALSE	ACH-000399
NCIH2196_LUNG	RFX3--RP11-509J21.1	1	1	RFX3	1258	chr9:3525747:-	RP11-509J21.1	35680	chr9:3546778:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0105	0.0105	LOCAL_INVERSION:-:+:[719],RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,RP11-509J21.1->chr9:3526723-3671646:+	NCIH2196_LUNG	0.5	1	0.021	TRUE	0	0	0	2	0	TRUE	ACH-000399
NCIH2196_LUNG	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	17	1	0.11	0.0105	0.0105	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH2196_LUNG	0.11	1	0.021	TRUE	274	363	69	150	0	FALSE	ACH-000399
NCIH2196_LUNG	SLC25A13--DLX6-AS1	1	1	SLC25A13	4550	chr7:95906508:-	DLX6-AS1	30296	chr7:96598430:-	ONLY_REF_SPLICE	NO	155	10	0.01	0.17	0.0105	0.0105	SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13,DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-	NCIH2196_LUNG	0.01	0.17	0.021	FALSE	0	0	0	2	0	FALSE	ACH-000399
KURAMOCHI_OVARY	PPFIBP1--RP11-709A23.2	519	277	PPFIBP1	4200	chr12:27731172:+	RP11-709A23.2	43131	chr12:27745681:-	ONLY_REF_SPLICE	YES	344	131	0.7	0.86	6.9124	3.6893	NEIGHBORS_OVERLAP:+:-:[1578],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,RP11-709A23.2->chr12:27745394-27746972:-	KURAMOCHI_OVARY	0.7	0.86	10.6017	FALSE	0	1	0	1	0	FALSE	ACH-000524
KURAMOCHI_OVARY	PPFIBP1--RP11-709A23.2	275	413	PPFIBP1	4200	chr12:27731172:+	RP11-709A23.2	41803	chr12:27747009:-	INCL_NON_REF_SPLICE	YES	344	0	0.67	1	3.6626	5.5006	NEIGHBORS_OVERLAP:+:-:[1578],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,RP11-709A23.2->chr12:27745394-27746972:-	KURAMOCHI_OVARY	0.67	1	9.1632	FALSE	0	0	0	1	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MT-TA--MT-TC	103	12	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3718	0.1598	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KURAMOCHI_OVARY	1	1	1.5316	FALSE	462	80	0	856	0	FALSE	ACH-000524
KURAMOCHI_OVARY	PPFIBP1--RP11-709A23.2	4	279	PPFIBP1	4200	chr12:27731172:+	RP11-709A23.2	42319	chr12:27746493:-	INCL_NON_REF_SPLICE	YES	344	139	0.45	0.67	0.0533	3.7159	NEIGHBORS_OVERLAP:+:-:[1578],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,RP11-709A23.2->chr12:27745394-27746972:-	KURAMOCHI_OVARY	0.45	0.67	3.7692	FALSE	0	1	0	1	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MT-ND6--MT-TE	53	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7059	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KURAMOCHI_OVARY	1	1	0.7059	FALSE	499	1288	110	792	0	FALSE	ACH-000524
KURAMOCHI_OVARY	EIF5A--NLRP1	48	10	EIF5A	1754	chr17:7211071:+	NLRP1	14204	chr17:5463363:-	ONLY_REF_SPLICE	YES	79	0	0.42	1	0.6393	0.1332	EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A,NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-	KURAMOCHI_OVARY	0.42	1	0.7725	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	TIMM23B--LINC00843	40	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.96	0.5327	0.1998	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KURAMOCHI_OVARY	0.96	1	0.7325	TRUE	508	994	45	981	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MT-ND6--MT-TE	40	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.5327	0.0799	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KURAMOCHI_OVARY	0.98	1	0.6126	FALSE	499	1288	110	792	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MINK1--ZBTB4	27	21	MINK1	1253	chr17:4736935:+	ZBTB4	23883	chr17:7370646:-	ONLY_REF_SPLICE	YES	96	40	0.33	0.55	0.3596	0.2797	MINK1->chr17:4736683-4801356:+,misshapen_like_kinase_1,ZBTB4->chr17:7362685-7387582:-,zinc_finger_and_BTB_domain_containing_4	KURAMOCHI_OVARY	0.33	0.55	0.6393	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	TIMM23--RP11-464F9.1	28	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	112	9	0.21	0.76	0.3729	0.0133	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KURAMOCHI_OVARY	0.21	0.76	0.3862	TRUE	519	3926	326	965	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RNF115--ARNTL2	23	10	RNF115	5980	chr1:145663367:+	ARNTL2	25936	chr12:27529279:+	ONLY_REF_SPLICE	YES	100	57	0.25	0.37	0.3063	0.1332	{Klijn_CCL:Ovary=1},RNF115->chr1:145611036-145696218:+,ring_finger_protein_115,ARNTL2->aryl_hydrocarbon_receptor_nuclear_translocator_like_2,chr12:27485787-27576241:+	KURAMOCHI_OVARY	0.25	0.37	0.4395	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	MT-TA--MT-TC	22	10	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.293	0.1332	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KURAMOCHI_OVARY	1	1	0.4262	FALSE	462	80	0	856	0	FALSE	ACH-000524
KURAMOCHI_OVARY	NEMF--L2HGDH	17	19	NEMF	30268	chr14:50253436:-	L2HGDH	40967	chr14:50760964:-	ONLY_REF_SPLICE	YES	62	27	0.37	0.57	0.2264	0.2531	{Klijn_CCL:Ovary=1},NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,L2HGDH->L-2-hydroxyglutarate_dehydrogenase,chr14:50704281-50779266:-	KURAMOCHI_OVARY	0.37	0.57	0.4795	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	MT-TA--MT-TC	20	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2664	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KURAMOCHI_OVARY	1	1	0.2664	FALSE	462	80	0	856	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MT-ND6--MT-TE	19	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2531	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KURAMOCHI_OVARY	1	1	0.2531	FALSE	499	1288	110	792	0	FALSE	ACH-000524
KURAMOCHI_OVARY	NRIP1--AF127936.7	17	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2264	0.04	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KURAMOCHI_OVARY	1	1	0.2664	FALSE	292	1546	117	613	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RNF135--C17orf78	16	4	RNF135	5968	chr17:29315124:+	C17orf78	18762	chr17:35746181:+	ONLY_REF_SPLICE	YES	6	1	0.77	0.95	0.2131	0.0533	{Klijn_CCL:Ovary=1},RNF135->chr17:29295803-29326929:+,ring_finger_protein_135,C17orf78->chr17:35732928-35749662:+,chromosome_17_open_reading_frame_78	KURAMOCHI_OVARY	0.77	0.95	0.2664	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	MINK1--ZBTB4	8	21	MINK1	2369	chr17:4762623:+	ZBTB4	23883	chr17:7370646:-	ONLY_REF_SPLICE	YES	110	40	0.21	0.42	0.1065	0.2797	MINK1->chr17:4736683-4801356:+,misshapen_like_kinase_1,ZBTB4->chr17:7362685-7387582:-,zinc_finger_and_BTB_domain_containing_4	KURAMOCHI_OVARY	0.21	0.42	0.3862	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	PLXDC1--TAF13	12	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1598	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	KURAMOCHI_OVARY	1	1	0.1598	TRUE	7	10	0	216	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RP11-353N4.6--SEC22B	10	6	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	124	337	0.11	0.05	0.1332	0.0799	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	KURAMOCHI_OVARY	0.05	0.11	0.2131	TRUE	49	42	7	43	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RP11-1L12.3--SLC5A12	9	7	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	3	0	0.84	1	0.1199	0.0932	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	KURAMOCHI_OVARY	0.84	1	0.2131	TRUE	3	101	0	60	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MT-TA--MT-TC	7	13	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0932	0.1731	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KURAMOCHI_OVARY	1	1	0.2663	FALSE	462	80	0	856	0	FALSE	ACH-000524
KURAMOCHI_OVARY	ZNF148--HEG1	8	9	ZNF148	1253	chr3:125093946:-	HEG1	43291	chr3:124696790:-	ONLY_REF_SPLICE	YES	35	170	0.33	0.09	0.1065	0.1199	ZNF148->chr3:124944405-125094198:-,zinc_finger_protein_148,HEG1->chr3:124684554-124774802:-,heart_development_protein_with_EGF_like_domains_1	KURAMOCHI_OVARY	0.09	0.33	0.2264	TRUE	0	0	0	2	0	TRUE	ACH-000524
KURAMOCHI_OVARY	NRIP1--AF127936.7	7	11	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.45	1	0.0932	0.1465	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KURAMOCHI_OVARY	0.45	1	0.2397	FALSE	164	806	69	479	0	FALSE	ACH-000524
KURAMOCHI_OVARY	PODXL--MT-ND4L	6	15	PODXL	8405	chr7:131190729:-	MT-ND4L	16755	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1333	0	0.02	1	0.0799	0.1998	PODXL->chr7:131185021-131242976:-,podocalyxin_like,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KURAMOCHI_OVARY	0.02	1	0.2797	FALSE	0	0	0	5	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MT-ND6--MT-TE	6	10	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0799	0.1332	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KURAMOCHI_OVARY	0.94	1	0.2131	FALSE	499	1288	110	792	0	FALSE	ACH-000524
KURAMOCHI_OVARY	DHX34--ZNF132	7	5	DHX34	4278	chr19:47858519:+	ZNF132	23831	chr19:58946578:-	INCL_NON_REF_SPLICE	YES	45	3	0.21	0.8	0.0932	0.0666	DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+,ZNF132->chr19:58944181-58951589:-,zinc_finger_protein_132	KURAMOCHI_OVARY	0.21	0.8	0.1598	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	AC009234.1--MT-ND2	8	0	AC009234.1	1197	chr2:50816357:-	MT-ND2	5156	chrM:4899:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1065	0	AC009234.1->chr2:50815828-50816553:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KURAMOCHI_OVARY	1	1	0.1065	FALSE	0	0	0	1	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MTATP6P1--MT-ND1	8	0	MTATP6P1	1126	chr1:569201:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1065	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	KURAMOCHI_OVARY	1	1	0.1065	FALSE	16	0	0	13	0	FALSE	ACH-000524
KURAMOCHI_OVARY	NRIP1--AF127936.7	6	8	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.44	1	0.0799	0.1065	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KURAMOCHI_OVARY	0.44	1	0.1864	FALSE	125	705	46	456	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MT-ND6--MT-TE	6	7	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0799	0.0932	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KURAMOCHI_OVARY	1	1	0.1731	FALSE	499	1288	110	792	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RNF135--C17orf78	6	6	RNF135	5968	chr17:29315124:+	C17orf78	17069	chr17:35742947:+	ONLY_REF_SPLICE	YES	6	0	0.67	1	0.0799	0.0799	{Klijn_CCL:Ovary=1},RNF135->chr17:29295803-29326929:+,ring_finger_protein_135,C17orf78->chr17:35732928-35749662:+,chromosome_17_open_reading_frame_78	KURAMOCHI_OVARY	0.67	1	0.1598	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	MT-ND6--MT-TE	6	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0799	0.0666	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KURAMOCHI_OVARY	1	1	0.1465	FALSE	499	1288	110	792	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MT-ND6--MT-TE	3	17	MT-ND6	1090	chrM:14584:-	MT-TE	4503	chrM:14765:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0.2264	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KURAMOCHI_OVARY	1	1	0.2664	FALSE	499	1288	110	792	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RP11-353N4.6--SEC22B	5	9	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	125	337	0.1	0.04	0.0666	0.1199	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	KURAMOCHI_OVARY	0.04	0.1	0.1865	TRUE	49	42	7	43	0	FALSE	ACH-000524
KURAMOCHI_OVARY	PLXNB2--MTND2P28	7	0	PLXNB2	12084	chr22:50721194:-	MTND2P28	22906	chr1:565055:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0932	0	PLXNB2->chr22:50713408-50746056:-,plexin_B2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	KURAMOCHI_OVARY	1	1	0.0932	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	RP11-353N4.6--SEC22B	5	8	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	124	418	0.09	0.03	0.0666	0.1065	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	KURAMOCHI_OVARY	0.03	0.09	0.1731	TRUE	33	36	9	21	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MT-ND6--MT-TE	4	10	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0533	0.1332	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KURAMOCHI_OVARY	0.88	1	0.1865	FALSE	499	1288	110	792	0	FALSE	ACH-000524
KURAMOCHI_OVARY	EIF5A--NLRP1	6	1	EIF5A	1754	chr17:7211071:+	NLRP1	16909	chr17:5456876:-	ONLY_REF_SPLICE	YES	79	24	0.08	0.23	0.0799	0.0133	EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A,NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-	KURAMOCHI_OVARY	0.08	0.23	0.0932	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	RP11-353N4.6--RP11-403I13.4	5	5	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	124	0	0.07	1	0.0666	0.0666	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	KURAMOCHI_OVARY	0.07	1	0.1332	TRUE	61	154	6	19	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MT-TA--MT-TC	3	12	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0.1598	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KURAMOCHI_OVARY	1	1	0.1998	FALSE	462	80	0	856	0	FALSE	ACH-000524
KURAMOCHI_OVARY	PDE6B--PPP2R2D	6	0	PDE6B	1510	chr4:619882:+	PPP2R2D	25830	chr10:133753533:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0799	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	KURAMOCHI_OVARY	1	1	0.0799	TRUE	5	45	2	9	0	FALSE	ACH-000524
KURAMOCHI_OVARY	STX8--FBXW10	5	4	STX8	11836	chr17:9395146:-	FBXW10	22466	chr17:18651254:+	ONLY_REF_SPLICE	YES	38	0	0.19	1	0.0666	0.0533	STX8->chr17:9153788-9479908:-,syntaxin_8,FBXW10->F-box_and_WD_repeat_domain_containing_10,chr17:18647326-18682662:+	KURAMOCHI_OVARY	0.19	1	0.1199	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	MT-ND6--MT-TE	3	10	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.81	1	0.04	0.1332	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KURAMOCHI_OVARY	0.81	1	0.1732	FALSE	499	1288	110	792	0	FALSE	ACH-000524
KURAMOCHI_OVARY	ASS1--MT-CO3	5	1	ASS1	7359	chr9:133339534:+	MT-CO3	21796	chrM:9549:+	INCL_NON_REF_SPLICE	YES	1573	17765	0	0	0.0666	0.0133	ASS1->argininosuccinate_synthase_1,chr9:133320316-133376661:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	KURAMOCHI_OVARY	0	0	0.0799	FALSE	0	0	0	12	0	FALSE	ACH-000524
KURAMOCHI_OVARY	CTD-2008L17.1--RP11-456O19.2	5	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0666	0.0133	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KURAMOCHI_OVARY	0.67	1	0.0799	FALSE	33	240	4	98	0	FALSE	ACH-000524
KURAMOCHI_OVARY	EIF5A--NLRP1	2	13	EIF5A	2115	chr17:7211432:+	NLRP1	14204	chr17:5463363:-	ONLY_REF_SPLICE	YES	405	0	0.04	1	0.0266	0.1731	EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A,NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-	KURAMOCHI_OVARY	0.04	1	0.1997	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	MT-ND6--MT-TE	5	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0666	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KURAMOCHI_OVARY	1	1	0.0666	FALSE	499	1288	110	792	0	FALSE	ACH-000524
KURAMOCHI_OVARY	PDE6B--PPP2R2D	5	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0666	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	KURAMOCHI_OVARY	1	1	0.0666	TRUE	7	65	3	22	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RP11-123O10.4--GRIP1	4	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0533	0.0533	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KURAMOCHI_OVARY	1	1	0.1066	FALSE	416	2512	207	587	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MT-ND6--MT-TE	3	7	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0.0932	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KURAMOCHI_OVARY	1	1	0.1332	FALSE	499	1288	110	792	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MT-ND6--MT-TE	3	7	MT-ND6	1053	chrM:14621:-	MT-TE	4526	chrM:14742:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.04	0.0932	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KURAMOCHI_OVARY	1	1	0.1332	FALSE	499	1288	110	792	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MTATP6P1--MT-ND1	3	7	MTATP6P1	1516	chr1:569591:+	MT-ND1	4888	chrM:3513:+	INCL_NON_REF_SPLICE	NO	1321	8478	0.01	0	0.04	0.0932	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	KURAMOCHI_OVARY	0	0.01	0.1332	FALSE	16	0	0	13	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0533	0.0266	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KURAMOCHI_OVARY	1	1	0.0799	FALSE	515	4851	409	746	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MT-TA--MT-TC	3	4	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0.0533	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KURAMOCHI_OVARY	1	1	0.0933	FALSE	462	80	0	856	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MYO9A--PARP6	3	4	MYO9A	1898	chr15:72410021:-	PARP6	70896	chr15:72559163:-	ONLY_REF_SPLICE	YES	8	59	0.47	0.11	0.04	0.0533	MYO9A->chr15:72114632-72410918:-,myosin_IXA,PARP6->chr15:72533522-72565340:-,poly(ADP-ribose)_polymerase_family_member_6	KURAMOCHI_OVARY	0.11	0.47	0.0933	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	RP11-353N4.6--SEC22B	1	12	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	NO	125	418	0.09	0.03	0.0133	0.1598	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	KURAMOCHI_OVARY	0.03	0.09	0.1731	TRUE	33	36	9	21	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RP11-680G10.1--GSE1	3	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	11	1	0.35	0.04	0.04	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KURAMOCHI_OVARY	0.35	1	0.08	TRUE	465	1949	224	605	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RP11-141M1.3--STARD13	3	2	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	6	1	0.45	0.04	0.0266	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	KURAMOCHI_OVARY	0.45	1	0.0666	FALSE	49	120	16	70	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RP11-353N4.6--RP11-403I13.4	3	2	RP11-353N4.6	11122	chr1:149616111:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	95	0	0.05	1	0.04	0.0266	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	KURAMOCHI_OVARY	0.05	1	0.0666	TRUE	8	13	1	2	0	FALSE	ACH-000524
KURAMOCHI_OVARY	SAMD5--SASH1	3	2	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	5	9	0.5	0.36	0.04	0.0266	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	KURAMOCHI_OVARY	0.36	0.5	0.0666	TRUE	53	396	64	110	0	FALSE	ACH-000524
KURAMOCHI_OVARY	IPO4--MT-CO3	3	1	IPO4	4736	chr14:24654435:-	MT-CO3	12967	chrM:9427:+	INCL_NON_REF_SPLICE	YES	132	13486	0.03	0	0.04	0.0133	IPO4->chr14:24649425-24658170:-,importin_4,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	KURAMOCHI_OVARY	0	0.03	0.0533	FALSE	0	0	0	1	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RNF135--C17orf78	3	1	RNF135	4805	chr17:29311778:+	C17orf78	18762	chr17:35746181:+	ONLY_REF_SPLICE	YES	6	1	0.4	0.8	0.04	0.0133	{Klijn_CCL:Ovary=1},RNF135->chr17:29295803-29326929:+,ring_finger_protein_135,C17orf78->chr17:35732928-35749662:+,chromosome_17_open_reading_frame_78	KURAMOCHI_OVARY	0.4	0.8	0.0533	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	RP11-353N4.6--RP11-403I13.4	2	5	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	125	0	0.05	1	0.0266	0.0666	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	KURAMOCHI_OVARY	0.05	1	0.0932	TRUE	61	154	6	19	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RP11-444D3.1--SOX5	3	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	36	1	0.1	0.04	0.0133	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KURAMOCHI_OVARY	0.1	1	0.0533	TRUE	477	1352	189	275	0	FALSE	ACH-000524
KURAMOCHI_OVARY	FOXO1--LINC00598	3	0	FOXO1	2015	chr13:41239720:-	LINC00598	16798	chr13:41034543:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.04	0	NEIGHBORS[74661],FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,LINC00598->chr13:41025131-41055143:-,long_intergenic_non-protein_coding_RNA_598	KURAMOCHI_OVARY	1	1	0.04	FALSE	8	15	1	11	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KURAMOCHI_OVARY	1	1	0.04	FALSE	499	1288	110	792	0	FALSE	ACH-000524
KURAMOCHI_OVARY	MTATP6P1--MT-ND1	3	0	MTATP6P1	1116	chr1:569191:+	MT-ND1	4693	chrM:3318:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	KURAMOCHI_OVARY	1	1	0.04	FALSE	16	0	0	13	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RP11-680G10.1--GSE1	2	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	13	1	0.32	0.0266	0.0533	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KURAMOCHI_OVARY	0.32	1	0.0799	TRUE	458	1351	185	561	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RNF115--ARNTL2	1	7	RNF115	5980	chr1:145663367:+	ARNTL2	28041	chr12:27533180:+	ONLY_REF_SPLICE	NO	100	62	0.07	0.11	0.0133	0.0932	{Klijn_CCL:Ovary=1},RNF115->chr1:145611036-145696218:+,ring_finger_protein_115,ARNTL2->aryl_hydrocarbon_receptor_nuclear_translocator_like_2,chr12:27485787-27576241:+	KURAMOCHI_OVARY	0.07	0.11	0.1065	TRUE	0	0	0	1	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RP11-1L12.3--SLC5A12	1	7	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	14042	chr11:26737901:-	ONLY_REF_SPLICE	NO	3	0	0.73	1	0.0133	0.0932	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	KURAMOCHI_OVARY	0.73	1	0.1065	TRUE	0	4	0	4	3	FALSE	ACH-000524
KURAMOCHI_OVARY	PPFIBP1--STK38L	2	2	PPFIBP1	4200	chr12:27731172:+	STK38L	46151	chr12:27450643:+	ONLY_REF_SPLICE	YES	344	8	0.01	0.33	0.0266	0.0266	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like	KURAMOCHI_OVARY	0.01	0.33	0.0532	FALSE	0	0	0	1	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RP11-108K3.1--GLDN	2	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0.0266	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	KURAMOCHI_OVARY	1	1	0.0532	FALSE	0	30	1	55	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RP11-353N4.6--RP11-403I13.4	1	6	RP11-353N4.6	11122	chr1:149616111:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	95	0	0.07	1	0.0133	0.0799	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	KURAMOCHI_OVARY	0.07	1	0.0932	TRUE	15	45	2	3	0	FALSE	ACH-000524
KURAMOCHI_OVARY	CALM2--LRPPRC	2	0	CALM2	1161	chr2:47403580:-	LRPPRC	41319	chr2:44132919:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,LRPPRC->chr2:44113647-44223144:-,leucine_rich_pentatricopeptide_repeat_containing	KURAMOCHI_OVARY	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	EIF5A--NLRP1	2	0	EIF5A	1117	chr17:7210434:+	NLRP1	14204	chr17:5463363:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A,NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-	KURAMOCHI_OVARY	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	PPFIBP1--ATE1	2	0	PPFIBP1	4200	chr12:27731172:+	ATE1	52692	chr10:123600778:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,ATE1->arginyltransferase_1,chr10:123499939-123688316:-	KURAMOCHI_OVARY	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	TRAPPC9--KCNK9	2	0	TRAPPC9	55504	chr8:140898123:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	KURAMOCHI_OVARY	1	1	0.0266	FALSE	7	13	2	16	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RP11-108K3.1--GLDN	1	3	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0133	0.04	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	KURAMOCHI_OVARY	1	1	0.0533	FALSE	0	19	0	46	0	FALSE	ACH-000524
KURAMOCHI_OVARY	PIGU--CTBP1	1	2	PIGU	1151	chr20:33264760:-	CTBP1	22453	chr4:1235307:-	ONLY_REF_SPLICE	YES	119	28	0.02	0.1	0.0133	0.0266	PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	KURAMOCHI_OVARY	0.02	0.1	0.0399	TRUE	0	0	0	1	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0133	0.0266	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	KURAMOCHI_OVARY	1	1	0.0399	FALSE	1	20	0	46	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RP11-353N4.6--RP11-403I13.4	1	2	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	125	0	0.02	1	0.0133	0.0266	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	KURAMOCHI_OVARY	0.02	1	0.0399	TRUE	30	67	4	15	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0133	0.0266	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KURAMOCHI_OVARY	1	1	0.0399	FALSE	407	2205	196	549	0	FALSE	ACH-000524
KURAMOCHI_OVARY	SORL1--RP11-242G20.1	1	2	SORL1	25494	chr11:121437822:+	RP11-242G20.1	66035	chr10:71450357:+	ONLY_REF_SPLICE	NO	90	0	0.03	1	0.0133	0.0266	SORL1->Oncogene{Bushman},chr11:121322912-121504402:+,sortilin-related_receptor,_L(DLR_class)_A_repeats_containing,RP11-242G20.1->chr10:71444655-71452208:+	KURAMOCHI_OVARY	0.03	1	0.0399	TRUE	0	0	0	1	0	FALSE	ACH-000524
KURAMOCHI_OVARY	CTD-2008L17.1--RP11-456O19.2	1	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.0133	0.0133	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KURAMOCHI_OVARY	0.4	1	0.0266	FALSE	20	187	4	79	0	FALSE	ACH-000524
KURAMOCHI_OVARY	KCNMB2--GNAS	1	1	KCNMB2	3867	chr3:178276772:+	GNAS	32327	chr20:57470667:+	ONLY_REF_SPLICE	YES	34	1110	0.06	0	0.0133	0.0133	KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	KURAMOCHI_OVARY	0	0.06	0.0266	FALSE	0	0	0	1	0	FALSE	ACH-000524
KURAMOCHI_OVARY	PARD3B--LAPTM4B	1	1	PARD3B	1379	chr2:205410894:+	LAPTM4B	48030	chr8:98863625:+	ONLY_REF_SPLICE	YES	7	1817	0.22	0	0.0133	0.0133	PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	KURAMOCHI_OVARY	0	0.22	0.0266	FALSE	0	0	0	1	0	FALSE	ACH-000524
KURAMOCHI_OVARY	PIGU--CTBP1	1	1	PIGU	1151	chr20:33264760:-	CTBP1	23648	chr4:1232125:-	ONLY_REF_SPLICE	YES	119	274	0.02	0.01	0.0133	0.0133	PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	KURAMOCHI_OVARY	0.01	0.02	0.0266	FALSE	0	0	0	1	0	FALSE	ACH-000524
KURAMOCHI_OVARY	POLR2J3--GNAS	1	1	POLR2J3	5847	chr7:102207444:-	GNAS	34442	chr20:57470667:+	ONLY_REF_SPLICE	YES	160	1110	0.01	0	0.0133	0.0133	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	KURAMOCHI_OVARY	0	0.01	0.0266	FALSE	0	0	0	2	0	FALSE	ACH-000524
KURAMOCHI_OVARY	RLF--MYCL	1	1	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	29	1	0.06	0.67	0.0133	0.0133	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	KURAMOCHI_OVARY	0.06	0.67	0.0266	TRUE	0	0	0	10	0	TRUE	ACH-000524
KURAMOCHI_OVARY	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	11074	chr13:33933602:-	STARD13	26750	chr13:33716510:-	ONLY_REF_SPLICE	YES	0	13	1	0.13	0.0133	0.0133	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	KURAMOCHI_OVARY	0.13	1	0.0266	FALSE	0	1	0	6	0	FALSE	ACH-000524
KURAMOCHI_OVARY	SLC43A2--P2RX1	1	1	SLC43A2	5709	chr17:1516489:-	P2RX1	30623	chr17:3808661:-	ONLY_REF_SPLICE	YES	14	0	0.12	1	0.0133	0.0133	SLC43A2->chr17:1472561-1532180:-,solute_carrier_family_43_member_2,P2RX1->chr17:3799886-3819794:-,purinergic_receptor_P2X_1	KURAMOCHI_OVARY	0.12	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000524
KURAMOCHI_OVARY	STX18-AS1--MSX1	1	1	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	38	1	0.05	0.0133	0.0133	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	KURAMOCHI_OVARY	0.05	1	0.0266	TRUE	37	101	7	40	0	FALSE	ACH-000524
KURAMOCHI_OVARY	TFG--GPR128	1	1	TFG	5019	chr3:100438902:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	320	0	0.01	1	0.0133	0.0133	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	KURAMOCHI_OVARY	0.01	1	0.0266	FALSE	12	123	7	17	0	FALSE	ACH-000524
KURAMOCHI_OVARY	TOMM7--STEAP1B	1	1	TOMM7	3034	chr7:22857619:-	STEAP1B	11272	chr7:22534505:-	ONLY_REF_SPLICE	YES	437	0	0	1	0.0133	0.0133	TOMM7->chr7:22852251-22862470:-,translocase_of_outer_mitochondrial_membrane_7,STEAP1B->STEAP_family_member_1B,chr7:22459063-22672544:-	KURAMOCHI_OVARY	0	1	0.0266	FALSE	0	0	0	2	0	FALSE	ACH-000524
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMB10--LCAT	130	171	PSMB10	3519	chr16:67968472:-	LCAT	10240	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	0	10	1	0.97	1.5941	2.0969	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	3.691	TRUE	0	0	0	2	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAPOLA--AK7	151	80	PAPOLA	2168	chr14:96968937:+	AK7	40553	chr14:96904172:+	ONLY_REF_SPLICE	YES	195	0	0.54	1	1.8517	0.981	LOCAL_REARRANGEMENT:+:[12006],PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	1	2.8327	TRUE	0	0	0	3	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	137	58	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.68	0.7112	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.3912	TRUE	508	994	45	981	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	89	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	581	9	0.14	0.91	1.0914	0.0858	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.91	1.1772	TRUE	519	3926	326	965	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMB10--LCAT	51	108	PSMB10	3291	chr16:67968700:-	LCAT	10240	chr16:67974381:-	ONLY_REF_SPLICE	YES	309	10	0.34	0.94	0.6254	1.3244	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.94	1.9498	TRUE	0	0	0	2	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMB10--LCAT	29	173	PSMB10	3524	chr16:67968467:-	LCAT	10240	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	0	10	1	0.95	0.3556	2.1214	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	2.477	TRUE	0	0	0	2	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMB10--LCAT	17	178	PSMB10	3519	chr16:67968472:-	LCAT	9887	chr16:67974734:-	INCL_NON_REF_SPLICE	YES	0	6	1	0.97	0.2085	2.1827	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	2.3912	TRUE	0	0	0	2	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRDX3--FAM45A	38	38	PRDX3	5352	chr10:120931894:-	FAM45A	22395	chr10:120889027:+	ONLY_REF_SPLICE	YES	1079	46	0.07	0.62	0.466	0.466	LOCAL_INVERSION:-:+:[29719],PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3,FAM45A->chr10:120863598-120897496:+,family_with_sequence_similarity_45_member_A	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.62	0.932	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	39	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4782	0.0245	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5027	FALSE	462	80	0	856	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMB10--LCAT	8	114	PSMB10	3291	chr16:67968700:-	LCAT	9887	chr16:67974734:-	ONLY_REF_SPLICE	YES	309	6	0.28	0.95	0.0981	1.3979	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.95	1.496	TRUE	0	0	0	2	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRK5--IQCE	25	21	GRK5	1381	chr10:120967481:+	IQCE	45526	chr7:2644515:+	ONLY_REF_SPLICE	YES	7	15	0.87	0.75	0.3066	0.2575	GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+,IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.87	0.5641	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	29	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3556	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3556	TRUE	0	0	0	518	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	18	21	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	215	34	0.15	0.53	0.2207	0.2575	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.53	0.4782	TRUE	267	562	48	632	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	16	29	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	217	34	0.17	0.57	0.1962	0.3556	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.57	0.5518	TRUE	267	562	48	632	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRDX3--FAM45A	18	14	PRDX3	5352	chr10:120931894:-	FAM45A	23503	chr10:120892027:+	ONLY_REF_SPLICE	YES	1079	44	0.03	0.42	0.2207	0.1717	LOCAL_INVERSION:-:+:[29719],PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3,FAM45A->chr10:120863598-120897496:+,family_with_sequence_similarity_45_member_A	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.42	0.3924	TRUE	0	0	0	1	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	19	5	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4345	0	0.01	1	0.233	0.0613	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.2943	FALSE	13	9	0	364	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM45A--GRK5	11	9	FAM45A	9716	chr10:120883081:+	GRK5	21426	chr10:121086028:+	ONLY_REF_SPLICE	YES	44	7	0.31	0.74	0.1349	0.1104	{Klijn_CCL:Stomach=1},NEIGHBORS[69605],FAM45A->chr10:120863598-120897496:+,family_with_sequence_similarity_45_member_A,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.74	0.2453	FALSE	0	0	0	1	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMB10--LCAT	5	33	PSMB10	2792	chr16:67969199:-	LCAT	10240	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	727	10	0.05	0.79	0.0613	0.4047	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.79	0.466	TRUE	0	0	0	2	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	10	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	2	0.82	0.92	0.1226	0.1594	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.92	0.282	FALSE	515	4851	409	746	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--B2M	13	1	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	8637	0	0	1	0.1594	0.0123	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1717	TRUE	0	0	0	28	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMB10--LCAT	4	30	PSMB10	2668	chr16:67969323:-	LCAT	10240	chr16:67974381:-	ONLY_REF_SPLICE	YES	717	10	0.05	0.77	0.0491	0.3679	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.77	0.417	TRUE	0	0	0	2	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	5	17	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	1	0.81	0.96	0.0613	0.2085	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.96	0.2698	FALSE	407	2205	196	549	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG3--SNX5	9	1	SNHG3	3181	chr1:28834672:+	SNX5	12073	chr20:17941969:-	ONLY_REF_SPLICE	YES	74	1379	0.12	0.01	0.1104	0.0123	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.12	0.1227	TRUE	0	0	0	1	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	7	4	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	52	0	0.17	1	0.0858	0.0491	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.1349	FALSE	114	26	4	85	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0981	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0981	FALSE	499	1288	110	792	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	7	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	4	0.92	0.75	0.0613	0.0858	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.92	0.1471	FALSE	189	492	56	216	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	9	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	5	0.76	0.72	0.0491	0.1104	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	0.76	0.1595	FALSE	189	492	56	216	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2130O13.1--RP11-157P23.2	6	0	CTD-2130O13.1	1073	chr18:44812168:+	RP11-157P23.2	14906	chr18:45084725:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0736	0	NEIGHBORS_OVERLAP:+:+:[57211],CTD-2130O13.1->chr18:44812096-45120914:+,RP11-157P23.2->chr18:45027543-45084754:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0736	FALSE	0	0	0	2	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--TUBB	6	0	IGL@	39997	chr22:23054949:+	TUBB	78022	chr6:30691270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0736	0	IGL@->Oncogene{Bushman},TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0736	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	4	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0613	0.0491	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1104	FALSE	499	1288	110	792	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0736	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0736	FALSE	499	1288	110	792	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	16	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	2	0.9	0.9	0.0245	0.1962	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.9	0.2207	FALSE	467	2173	244	435	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	5	3	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0613	0.0368	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0981	FALSE	46	201	11	112	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	4	5	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4321	0	0	1	0.0491	0.0613	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1104	FALSE	13	9	0	364	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	8	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.79	0.0368	0.0981	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	0.1349	FALSE	189	492	56	216	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0613	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0613	FALSE	189	492	56	216	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0.0368	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0859	FALSE	462	80	0	856	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL12--GAS5	4	3	RPL12	3125	chr9:130211560:-	GAS5	11911	chr1:173833842:-	ONLY_REF_SPLICE	YES	4577	2279	0	0	0.0491	0.0368	RPL12->chr9:130209953-130213684:-,ribosomal_protein_L12,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0859	FALSE	0	1	0	5	1	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	6	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	5	0.9	0.64	0.0368	0.0736	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.9	0.1104	FALSE	189	492	56	216	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	6	MT-CO3	1038	chrM:9244:+	MT-ATP6	5225	chrM:8967:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.5	0.0368	0.0736	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.1104	FALSE	189	492	56	216	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	4	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	51	0	0.12	1	0.0368	0.0491	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.0859	FALSE	114	26	4	85	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	4	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0.0491	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0859	FALSE	499	1288	110	792	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PFKL--MT-ND4L	4	0	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0491	FALSE	0	0	0	33	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0.0245	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0613	FALSE	462	80	0	856	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	3	2	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0.0245	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0613	TRUE	13	49	2	38	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	1	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	3	0	0.57	1	0.0368	0.0123	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.0491	FALSE	189	492	56	216	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0.0123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0491	FALSE	499	1288	110	792	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	3	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0368	0.0123	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0491	TRUE	62	24	1	171	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HLA-DRB1--PTMA	3	0	HLA-DRB1	1175	chr6:32557451:-	PTMA	11035	chr2:232573235:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	HLA-DRB1->chr6:32546546-32557625:-,major_histocompatibility_complex,_class_II,_DR_beta_1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	FALSE	0	0	0	3	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAEA--CTBP1	3	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0368	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	TRUE	3	14	2	43	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	FALSE	189	492	56	216	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	FALSE	189	492	56	216	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	TRUE	22	156	2	142	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM5--UBE2G2	3	0	TMEM5	4639	chr12:64178852:+	UBE2G2	24829	chr21:46193602:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0368	0	TMEM5->chr12:64173583-64203338:+,transmembrane_protein_5,UBE2G2->chr21:46188955-46221934:-,ubiquitin_conjugating_enzyme_E2_G2	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM45A--GRK5	1	7	FAM45A	9716	chr10:120883081:+	GRK5	23594	chr10:121140327:+	ONLY_REF_SPLICE	NO	44	4	0.15	0.67	0.0123	0.0858	{Klijn_CCL:Stomach=1},NEIGHBORS[69605],FAM45A->chr10:120863598-120897496:+,family_with_sequence_similarity_45_member_A,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.67	0.0981	FALSE	0	0	0	1	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRK5--IQCE	1	7	GRK5	1381	chr10:120967481:+	IQCE	46521	chr7:2645510:+	ONLY_REF_SPLICE	NO	7	19	0.53	0.3	0.0123	0.0858	GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+,IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.53	0.0981	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	2	2	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	2	1	0.67	0.0245	0.0245	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.049	TRUE	0	48	0	65	48	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRK5--IQCE	2	1	GRK5	1381	chr10:120967481:+	IQCE	49075	chr7:2649678:+	ONLY_REF_SPLICE	YES	7	9	0.3	0.25	0.0245	0.0123	GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+,IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.3	0.0368	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	8	0	0.27	1	0.0245	0.0123	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.0368	FALSE	125	705	46	456	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WASH7P--FAM138A	1	5	WASH7P	2640	chr1:24738:-	FAM138A	11262	chr1:35481:-	ONLY_REF_SPLICE	YES	109	2	0.05	0.75	0.0123	0.0613	LOCAL_REARRANGEMENT:-:[4748],WASH7P->WAS_protein_family_homolog_7_pseudogene,chr1:14363-29806:-,FAM138A->chr1:34554-36081:-,family_with_sequence_similarity_138_member_A	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.75	0.0736	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACOX3--PSMB1	2	0	ACOX3	1076	chr4:8442375:-	PSMB1	26059	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	ACOX3->acyl-CoA_oxidase_3,_pristanoyl,chr4:8368009-8442450:-,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf25--DAZAP1	2	0	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0245	TRUE	6	7	1	24	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND4A--HAUS1	2	0	DENND4A	1284	chr15:66084348:-	HAUS1	45806	chr18:43698147:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	DENND4A->DENN_domain_containing_4A,chr15:65950384-66084631:-,HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLB1--TRAK1	2	0	GLB1	1220	chr3:33138503:-	TRAK1	29655	chr3:42128596:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GLB1->Oncogene{Bushman},chr3:33038100-33138722:-,galactosidase_beta_1,TRAK1->chr3:42055294-42267381:+,trafficking_protein,_kinesin_binding_1	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0245	FALSE	292	1546	117	613	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-344E13.3--UBBP4	1	4	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0.0491	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0614	TRUE	23	13	0	54	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM161B--RASA1	2	0	TMEM161B	1756	chr5:87564538:-	RASA1	32583	chr5:86637107:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	TMEM161B->chr5:87485450-87565293:-,transmembrane_protein_161B,RASA1->Oncogene{Bushman},RAS_p21_protein_activator_1,chr5:86563705-86687748:+	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VPS16--TCP1	2	0	VPS16	1125	chr20:2821473:+	TCP1	18227	chr6:160202142:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	VPS16->VPS16,_CORVET/HOPS_core_subunit,chr20:2821349-2847378:+,TCP1->chr6:160199530-160210781:-,t-complex_1	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C5orf56--SKP1	1	1	C5orf56	1406	chr5:131746733:+	SKP1	17449	chr5:133509713:-	ONLY_REF_SPLICE	NO	12	457	0.14	0	0.0123	0.0123	C5orf56->chr5:131746328-131811736:+,chromosome_5_open_reading_frame_56,SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.14	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOR2--UBC	1	1	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	55	1	0.04	0.0123	0.0123	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0246	TRUE	145	312	16	51	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOR2--UBC	1	1	NCOR2	9374	chr12:124950719:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	96	55	0.02	0.04	0.0123	0.0123	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0246	TRUE	12	8	1	2	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAX5--KIAA1009	1	1	PAX5	4550	chr9:37006470:-	KIAA1009	52148	chr6:84836231:-	ONLY_REF_SPLICE	YES	172	35	0.01	0.05	0.0123	0.0123	PAX5->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:36833272-37034103:-,paired_box_5,KIAA1009->chr6:84833960-84937353:-	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHIP--HMGN3	1	1	PHIP	1789	chr6:79787165:-	HMGN3	45088	chr6:79924739:-	ONLY_REF_SPLICE	YES	47	1139	0.04	0	0.0123	0.0123	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},PHIP->Oncogene{Bushman},chr6:79645584-79787953:-,pleckstrin_homology_domain_interacting_protein,HMGN3->chr6:79910962-79944406:-,high_mobility_group_nucleosomal_binding_domain_3	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0246	FALSE	0	7	0	2	1	FALSE	ACH-000167
KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PKM--ACSL1	1	1	PKM	16267	chr15:72495363:-	ACSL1	34933	chr4:185695029:-	ONLY_REF_SPLICE	YES	4929	159	0	0.01	0.0123	0.0123	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,ACSL1->acyl-CoA_synthetase_long-chain_family_member_1,chr4:185676749-185747972:-	KE97_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000167
HCC364_LUNG	TIMM23B--LINC00843	73	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.007	0.4138	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC364_LUNG	1	1	1.4208	TRUE	508	994	45	981	0	FALSE	ACH-000575
HCC364_LUNG	TIMM23--RP11-464F9.1	42	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	532	4	0.07	0.91	0.5794	0.0138	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC364_LUNG	0.07	0.91	0.5932	TRUE	519	3926	326	965	0	FALSE	ACH-000575
HCC364_LUNG	MT-TA--MT-TC	40	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5518	0.0276	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC364_LUNG	1	1	0.5794	FALSE	462	80	0	856	0	FALSE	ACH-000575
HCC364_LUNG	ZNF654--HMGB2	27	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3724	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HCC364_LUNG	1	1	0.3724	TRUE	0	0	0	518	0	FALSE	ACH-000575
HCC364_LUNG	MT-ND4--MT-ATP8	18	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2483	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC364_LUNG	1	1	0.2483	FALSE	230	198	14	283	0	FALSE	ACH-000575
HCC364_LUNG	PLXDC1--TAF13	17	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2345	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCC364_LUNG	1	1	0.2345	TRUE	7	10	0	216	0	FALSE	ACH-000575
HCC364_LUNG	NIPA2--POLA1	14	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1931	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	HCC364_LUNG	1	1	0.1931	TRUE	46	1352	75	139	0	FALSE	ACH-000575
HCC364_LUNG	MT-CO3--MT-ATP6	5	21	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	6	0.96	0.81	0.069	0.2897	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC364_LUNG	0.81	0.96	0.3587	FALSE	189	492	56	216	0	FALSE	ACH-000575
HCC364_LUNG	MT-CO3--MT-ATP6	6	16	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	6	0.96	0.79	0.0828	0.2207	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC364_LUNG	0.79	0.96	0.3035	FALSE	189	492	56	216	0	FALSE	ACH-000575
HCC364_LUNG	CALM3--MT-ND4L	9	3	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2056	0	0.01	1	0.1241	0.0414	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC364_LUNG	0.01	1	0.1655	FALSE	1	1	0	107	0	FALSE	ACH-000575
HCC364_LUNG	MT-CO3--MT-ATP6	3	25	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	8	36	0.78	0.44	0.0414	0.3449	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC364_LUNG	0.44	0.78	0.3863	FALSE	189	492	56	216	0	FALSE	ACH-000575
HCC364_LUNG	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1241	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC364_LUNG	1	1	0.1241	TRUE	0	0	0	434	0	FALSE	ACH-000575
HCC364_LUNG	MT-TA--MT-TC	7	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0966	0.0552	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC364_LUNG	1	1	0.1518	FALSE	462	80	0	856	0	FALSE	ACH-000575
HCC364_LUNG	MT-CO3--MT-ATP6	4	15	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	7	1	0.73	0.0552	0.2069	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC364_LUNG	0.73	1	0.2621	FALSE	189	492	56	216	0	FALSE	ACH-000575
HCC364_LUNG	MT-CO3--MT-ATP6	3	15	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.86	0.0414	0.2069	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC364_LUNG	0.86	1	0.2483	FALSE	189	492	56	216	0	FALSE	ACH-000575
HCC364_LUNG	RP11-96H19.1--RP11-446N19.1	6	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.9	0.9	0.0828	0.0414	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC364_LUNG	0.9	0.9	0.1242	FALSE	515	4851	409	746	0	FALSE	ACH-000575
HCC364_LUNG	MT-ATP6--MT-CO1	6	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8824	20012	0	0	0.0828	0.0276	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC364_LUNG	0	0	0.1104	FALSE	183	104	9	328	0	FALSE	ACH-000575
HCC364_LUNG	MT-CO3--MT-ATP6	3	14	MT-CO3	1070	chrM:9276:+	MT-ATP6	5191	chrM:8933:+	INCL_NON_REF_SPLICE	YES	0	51	1	0.25	0.0414	0.1931	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC364_LUNG	0.25	1	0.2345	FALSE	189	492	56	216	0	FALSE	ACH-000575
HCC364_LUNG	PI4K2A--LIFR	6	2	PI4K2A	5368	chr10:99410898:+	LIFR	24941	chr5:38530768:-	ONLY_REF_SPLICE	YES	27	6	0.23	0.57	0.0828	0.0276	PI4K2A->chr10:99344131-99433667:+,chr10:99344131-99436191:+,phosphatidylinositol_4-kinase_type_2_alpha,LIFR->Oncogene{Bushman},chr5:38475065-38608456:-,leukemia_inhibitory_factor_receptor_alpha	HCC364_LUNG	0.23	0.57	0.1104	TRUE	0	0	0	1	0	TRUE	ACH-000575
HCC364_LUNG	MT-CO3--MT-ATP6	4	9	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.87	0.0552	0.1241	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC364_LUNG	0.87	1	0.1793	FALSE	189	492	56	216	0	FALSE	ACH-000575
HCC364_LUNG	MT-CO3--MT-ATP6	3	13	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.73	0.0414	0.1793	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC364_LUNG	0.73	1	0.2207	FALSE	189	492	56	216	0	FALSE	ACH-000575
HCC364_LUNG	MT-CO3--MT-ATP6	4	8	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.86	0.0552	0.1104	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC364_LUNG	0.86	1	0.1656	FALSE	189	492	56	216	0	FALSE	ACH-000575
HCC364_LUNG	MT-CO3--MT-ATP6	4	8	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	1	2	0.92	0.86	0.0552	0.1104	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC364_LUNG	0.86	0.92	0.1656	FALSE	189	492	56	216	0	FALSE	ACH-000575
HCC364_LUNG	MT-ND4--MT-ATP8	6	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0828	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC364_LUNG	1	1	0.0828	FALSE	230	193	14	283	0	FALSE	ACH-000575
HCC364_LUNG	MT-ND6--MT-TE	5	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.069	0.0414	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC364_LUNG	0.89	1	0.1104	FALSE	499	1288	110	792	0	FALSE	ACH-000575
HCC364_LUNG	RP11-123O10.4--GRIP1	4	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0552	0.0966	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC364_LUNG	1	1	0.1518	FALSE	416	2512	207	587	0	FALSE	ACH-000575
HCC364_LUNG	MT-ATP6--MT-CO1	5	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8846	19760	0	0	0.069	0.0276	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC364_LUNG	0	0	0.0966	FALSE	183	104	9	328	0	FALSE	ACH-000575
HCC364_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	13951	1439	0	0	0.069	0.0276	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC364_LUNG	0	0	0.0966	FALSE	231	217	16	283	0	FALSE	ACH-000575
HCC364_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14281	6	0	0.54	0.069	0.0276	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC364_LUNG	0	0.54	0.0966	FALSE	231	217	16	283	0	FALSE	ACH-000575
HCC364_LUNG	MT-ND6--MT-TE	5	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0.0276	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC364_LUNG	1	1	0.0966	FALSE	499	1288	110	792	0	FALSE	ACH-000575
HCC364_LUNG	MT-TA--MT-TC	4	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0.069	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC364_LUNG	1	1	0.1242	FALSE	462	80	0	856	0	FALSE	ACH-000575
HCC364_LUNG	MT-CO3--MT-ATP6	3	8	MT-CO3	1038	chrM:9244:+	MT-ATP6	5225	chrM:8967:+	INCL_NON_REF_SPLICE	YES	0	14	1	0.44	0.0414	0.1104	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC364_LUNG	0.44	1	0.1518	FALSE	189	492	56	216	0	FALSE	ACH-000575
HCC364_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC364_LUNG	1	1	0.069	FALSE	231	204	14	283	0	FALSE	ACH-000575
HCC364_LUNG	SPSB1--H6PD	5	0	SPSB1	1192	chr1:9353130:+	H6PD	16626	chr1:9322118:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.069	0	GTEx_FI:{Esophagus=[count:1=pct:0.2],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6]},LOCAL_REARRANGEMENT:+:[21543],SPSB1->chr1:9352939-9429591:+,splA/ryanodine_receptor_domain_and_SOCS_box_containing_1,H6PD->chr1:9294834-9331396:+,hexose-6-phosphate_dehydrogenase/glucose_1-dehydrogenase	HCC364_LUNG	1	1	0.069	TRUE	3	8	0	2	0	FALSE	ACH-000575
HCC364_LUNG	CTD-2008L17.1--RP11-456O19.2	4	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0552	0.0276	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HCC364_LUNG	1	1	0.0828	FALSE	33	240	4	98	0	FALSE	ACH-000575
HCC364_LUNG	MT-ATP6--MT-CO1	4	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	8796	19336	0	0	0.0552	0.0276	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC364_LUNG	0	0	0.0828	FALSE	183	104	9	328	0	FALSE	ACH-000575
HCC364_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13198	61	0	0.09	0.0552	0.0276	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC364_LUNG	0	0.09	0.0828	FALSE	231	217	16	283	0	FALSE	ACH-000575
HCC364_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	16287	0	0	1	0.0552	0.0276	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC364_LUNG	0	1	0.0828	FALSE	231	217	16	283	0	FALSE	ACH-000575
HCC364_LUNG	MT-ND6--MT-TE	4	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0.0276	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC364_LUNG	1	1	0.0828	FALSE	499	1288	110	792	0	FALSE	ACH-000575
HCC364_LUNG	MYH9--MT2A	4	1	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	2202	7	0	0.42	0.0552	0.0138	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HCC364_LUNG	0	0.42	0.069	FALSE	0	0	0	24	0	FALSE	ACH-000575
HCC364_LUNG	MT-CO2--MT-RNR2	4	0	MT-CO2	1240	chrM:7825:+	MT-RNR2	4704	chrM:1690:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC364_LUNG	1	1	0.0552	FALSE	24	6	1	8	0	FALSE	ACH-000575
HCC364_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC364_LUNG	1	1	0.0552	FALSE	189	492	56	216	0	FALSE	ACH-000575
HCC364_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC364_LUNG	1	1	0.0552	FALSE	231	205	14	283	0	FALSE	ACH-000575
HCC364_LUNG	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1083	chr6:30691572:-	TUBBP2	4900	chr13:41959193:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HCC364_LUNG	1	1	0.0552	TRUE	0	1	0	48	1	FALSE	ACH-000575
HCC364_LUNG	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HCC364_LUNG	1	1	0.0552	TRUE	0	1	0	48	1	FALSE	ACH-000575
HCC364_LUNG	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HCC364_LUNG	1	1	0.0552	TRUE	0	1	0	48	1	FALSE	ACH-000575
HCC364_LUNG	MT-ATP6--MT-CO1	3	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2996	20331	0	0	0.0414	0.0414	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC364_LUNG	0	0	0.0828	FALSE	183	104	9	328	0	FALSE	ACH-000575
HCC364_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1575	chrM:11334:+	MT-ATP8	5385	chrM:8372:+	INCL_NON_REF_SPLICE	YES	16330	0	0	1	0.0414	0.0414	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC364_LUNG	0	1	0.0828	FALSE	231	217	16	283	0	FALSE	ACH-000575
HCC364_LUNG	MT-ND5--MT-ND6	3	3	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	2011	1	0	0.0414	0.0414	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HCC364_LUNG	0	1	0.0828	FALSE	26	124	4	93	0	FALSE	ACH-000575
HCC364_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1402	chrM:8928:+	MT-CO1	5328	chrM:6550:+	INCL_NON_REF_SPLICE	YES	10324	19961	0	0	0.0414	0.0276	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC364_LUNG	0	0	0.069	FALSE	183	104	9	328	0	FALSE	ACH-000575
HCC364_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	8901	16572	0	0	0.0414	0.0276	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC364_LUNG	0	0	0.069	FALSE	183	104	9	328	0	FALSE	ACH-000575
HCC364_LUNG	MT-CO2--MT-RNR2	3	2	MT-CO2	1302	chrM:7887:+	MT-RNR2	4747	chrM:1733:+	INCL_NON_REF_SPLICE	YES	16320	0	0	1	0.0414	0.0276	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC364_LUNG	0	1	0.069	FALSE	24	6	1	8	0	FALSE	ACH-000575
HCC364_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	16287	0	0	1	0.0414	0.0276	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC364_LUNG	0	1	0.069	FALSE	231	217	16	283	0	FALSE	ACH-000575
HCC364_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17020	61	0	0.06	0.0414	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC364_LUNG	0	0.06	0.0552	FALSE	231	217	16	283	0	FALSE	ACH-000575
HCC364_LUNG	MT-TA--MT-TC	3	1	MT-TA	1016	chrM:5640:-	MT-TC	4007	chrM:5889:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0.0138	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC364_LUNG	1	1	0.0552	FALSE	462	80	0	856	0	FALSE	ACH-000575
HCC364_LUNG	NPM1P24--SET	3	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	45	1619	0.08	0	0.0414	0.0138	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC364_LUNG	0	0.08	0.0552	FALSE	0	0	0	434	0	FALSE	ACH-000575
HCC364_LUNG	RP1-178F15.5--RPLP1	3	1	RP1-178F15.5	1244	chr1:153606573:-	RPLP1	9579	chr15:69745182:+	INCL_NON_REF_SPLICE	YES	41	0	0.09	1	0.0414	0.0138	RP1-178F15.5->chr1:153598808-153606816:-,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	HCC364_LUNG	0.09	1	0.0552	TRUE	0	0	0	2	0	TRUE	ACH-000575
HCC364_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1244	chrM:11003:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC364_LUNG	1	1	0.0414	FALSE	231	204	14	283	0	FALSE	ACH-000575
HCC364_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC364_LUNG	1	1	0.0414	FALSE	231	204	14	283	0	FALSE	ACH-000575
HCC364_LUNG	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC364_LUNG	1	1	0.0414	TRUE	0	0	0	434	0	FALSE	ACH-000575
HCC364_LUNG	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1068	chr6:30691587:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HCC364_LUNG	1	1	0.0414	TRUE	0	1	0	48	1	FALSE	ACH-000575
HCC364_LUNG	B4GALNT3--NINJ2	2	0	B4GALNT3	1182	chr12:569711:+	NINJ2	30098	chr12:675344:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	LOCAL_INVERSION:+:-:[787],B4GALNT3->beta-1,4-N-acetyl-galactosaminyltransferase_3,chr12:569530-672675:+,NINJ2->chr12:673462-772945:-,ninjurin_2	HCC364_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000575
HCC364_LUNG	BOD1--SFXN1	2	0	BOD1	1461	chr5:173043203:-	SFXN1	12967	chr5:174919098:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	BOD1->biorientation_of_chromosomes_in_cell_division_1,chr5:173034517-173043663:-,SFXN1->chr5:174904065-174956745:+,sideroflexin_1	HCC364_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000575
HCC364_LUNG	CTC-228N24.2--CTC-228N24.3	2	0	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HCC364_LUNG	1	1	0.0276	TRUE	0	1	0	12	1	TRUE	ACH-000575
HCC364_LUNG	TRABD--PPP1R12C	2	0	TRABD	1062	chr22:50624405:+	PPP1R12C	21551	chr19:55607703:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	TRABD->TraB_domain_containing,chr22:50624344-50638027:+,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	HCC364_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000575
HCC364_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0138	0.0414	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC364_LUNG	0.8	1	0.0552	FALSE	275	511	55	178	0	FALSE	ACH-000575
HCC364_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0138	0.0414	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC364_LUNG	0.8	1	0.0552	FALSE	407	2205	196	549	0	FALSE	ACH-000575
HCC364_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.8	0.8	0.0138	0.0414	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC364_LUNG	0.8	0.8	0.0552	FALSE	467	2173	244	435	0	FALSE	ACH-000575
HCC364_LUNG	ARFRP1--ABCD1	1	1	ARFRP1	2669	chr20:62337709:-	ABCD1	15682	chrX:152994687:+	ONLY_REF_SPLICE	YES	165	11	0.01	0.15	0.0138	0.0138	ARFRP1->ADP_ribosylation_factor_related_protein_1,ArcherDX_panel,FoundationOne_panel,chr20:62329996-62339377:-,ABCD1->ATP_binding_cassette_subfamily_D_member_1,chrX:152990323-153010216:+	HCC364_LUNG	0.01	0.15	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000575
HCC364_LUNG	GALNT2--COG2	1	1	GALNT2	2488	chr1:230203153:+	COG2	27513	chr1:230795210:+	ONLY_REF_SPLICE	NO	801	121	0	0.02	0.0138	0.0138	GALNT2->chr1:230193536-230417870:+,polypeptide_N-acetylgalactosaminyltransferase_2,COG2->chr1:230778235-230829728:+,component_of_oligomeric_golgi_complex_2	HCC364_LUNG	0	0.02	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000575
HCC364_LUNG	GNAZ--GAS2L1	1	1	GNAZ	3574	chr22:23438605:+	GAS2L1	13552	chr22:29706429:+	ONLY_REF_SPLICE	YES	47	237	0.04	0.01	0.0138	0.0138	GNAZ->G_protein_subunit_alpha_z,chr22:23412540-23467224:+,GAS2L1->chr22:29702572-29708774:+,growth_arrest_specific_2_like_1	HCC364_LUNG	0.01	0.04	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000575
HCC364_LUNG	MRPL20--ATAD3B	1	1	MRPL20	2505	chr1:1341189:-	ATAD3B	10597	chr1:1414024:+	ONLY_REF_SPLICE	YES	975	145	0	0.01	0.0138	0.0138	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[64450],MRPL20->chr1:1337288-1342693:-,mitochondrial_ribosomal_protein_L20,ATAD3B->ATPase_family,_AAA_domain_containing_3B,chr1:1407143-1433228:+	HCC364_LUNG	0	0.01	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000575
HCC364_LUNG	PDCD5--SUPT5H	1	1	PDCD5	2165	chr19:33073138:+	SUPT5H	22226	chr19:39959902:+	ONLY_REF_SPLICE	YES	1315	230	0	0.01	0.0138	0.0138	PDCD5->chr19:33071974-33078358:+,programmed_cell_death_5,SUPT5H->SPT5_homolog,_DSIF_elongation_factor_subunit,chr19:39926796-39967310:+	HCC364_LUNG	0	0.01	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000575
HCC1359_LUNG	TIMM23B--LINC00843	226	44	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	2.1876	0.4259	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1359_LUNG	1	1	2.6135	TRUE	508	994	45	981	0	FALSE	ACH-000901
HCC1359_LUNG	TIMM23--RP11-464F9.1	126	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	227	1	0.36	0.99	1.2196	0.029	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC1359_LUNG	0.36	0.99	1.2486	TRUE	519	3926	326	965	0	FALSE	ACH-000901
HCC1359_LUNG	GS1-124K5.12--TGFBI	72	50	GS1-124K5.12	5666	chr7:66038372:-	TGFBI	13354	chr5:135379747:+	ONLY_REF_SPLICE	YES	70	18	0.64	0.87	0.6969	0.484	GS1-124K5.12->chr7:66010634-66057373:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HCC1359_LUNG	0.64	0.87	1.1809	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	KDM5A--RERG	72	32	KDM5A	5408	chr12:493197:-	RERG	50778	chr12:15274053:-	ONLY_REF_SPLICE	YES	28	12	0.79	0.9	0.6969	0.3097	KDM5A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:389295-498620:-,lysine_demethylase_5A,RERG->RAS_like_estrogen_regulated_growth_inhibitor,chr12:15260717-15501609:-	HCC1359_LUNG	0.79	0.9	1.0066	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	ZNF654--HMGB2	36	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3485	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HCC1359_LUNG	1	1	0.3485	TRUE	0	0	0	518	0	FALSE	ACH-000901
HCC1359_LUNG	SERPINE2--XRCC5	31	17	SERPINE2	10173	chr2:224856520:-	XRCC5	43290	chr2:217054948:+	ONLY_REF_SPLICE	YES	279	816	0.15	0.06	0.3001	0.1646	{Klijn_CCL:Lung=1},SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2,XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+	HCC1359_LUNG	0.06	0.15	0.4647	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	VMP1--TUBD1	29	13	VMP1	7938	chr17:57816308:+	TUBD1	32995	chr17:57944110:-	ONLY_REF_SPLICE	YES	26	2	0.62	0.95	0.2807	0.1258	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_INVERSION:+:-:[17235],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,TUBD1->chr17:57936851-57970304:-,tubulin_delta_1	HCC1359_LUNG	0.62	0.95	0.4065	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	MT-TA--MT-TC	31	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3001	0.029	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1359_LUNG	1	1	0.3291	FALSE	462	80	0	856	0	FALSE	ACH-000901
HCC1359_LUNG	PLXDC1--TAF13	31	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3001	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCC1359_LUNG	1	1	0.3001	TRUE	7	10	0	216	0	FALSE	ACH-000901
HCC1359_LUNG	APP--NCAM2	24	8	APP	5253	chr21:27484296:-	NCAM2	52676	chr21:22838927:+	ONLY_REF_SPLICE	YES	490	0	0.06	1	0.2323	0.0774	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,NCAM2->chr21:22370633-22915650:+,neural_cell_adhesion_molecule_2	HCC1359_LUNG	0.06	1	0.3097	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	EEF2--RPS28	24	2	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	2733	0	0.01	1	0.2323	0.0194	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC1359_LUNG	0.01	1	0.2517	TRUE	0	0	0	100	0	FALSE	ACH-000901
HCC1359_LUNG	XRCC5--HTR2B	21	12	XRCC5	20768	chr2:217026771:+	HTR2B	33038	chr2:231978643:-	ONLY_REF_SPLICE	YES	898	0	0.04	1	0.2033	0.1162	{Klijn_CCL:Lung=1},XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,HTR2B->5-hydroxytryptamine_receptor_2B,chr2:231972944-231989832:-	HCC1359_LUNG	0.04	1	0.3195	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	KDM5A--RERG	19	16	KDM5A	5408	chr12:493197:-	RERG	51835	chr12:15264351:-	ONLY_REF_SPLICE	YES	28	8	0.56	0.81	0.1839	0.1549	KDM5A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:389295-498620:-,lysine_demethylase_5A,RERG->RAS_like_estrogen_regulated_growth_inhibitor,chr12:15260717-15501609:-	HCC1359_LUNG	0.56	0.81	0.3388	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	UTP18--SLC25A6	22	3	UTP18	8069	chr17:49354665:+	SLC25A6	24666	chrX:1505652:-	ONLY_REF_SPLICE	YES	137	1023	0.15	0.02	0.213	0.029	UTP18->UTP18,_small_subunit_processome_component,chr17:49337889-49375297:+,SLC25A6->chrX:1505045-1511617:-,chrY:1455045-1461617:-,solute_carrier_family_25_member_6	HCC1359_LUNG	0.02	0.15	0.242	TRUE	0	0	0	1	0	FALSE	ACH-000901
HCC1359_LUNG	MT-ND6--MT-TE	20	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1936	0.0097	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1359_LUNG	0.95	1	0.2033	FALSE	499	1288	110	792	0	FALSE	ACH-000901
HCC1359_LUNG	RP11-680G10.1--GSE1	18	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	16	1	0.54	0.1742	0.0097	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1359_LUNG	0.54	1	0.1839	TRUE	465	1949	224	605	0	FALSE	ACH-000901
HCC1359_LUNG	FUT10--AGAP1	16	6	FUT10	2715	chr8:33318890:-	AGAP1	24785	chr2:236649607:+	ONLY_REF_SPLICE	YES	14	34	0.61	0.39	0.1549	0.0581	FUT10->chr8:33228342-33330940:-,fucosyltransferase_10,AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+	HCC1359_LUNG	0.39	0.61	0.213	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	HSP90AB1--MT-RNR2	17	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2767	0	0.01	1	0.1646	0.0194	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1359_LUNG	0.01	1	0.184	FALSE	13	9	0	364	0	FALSE	ACH-000901
HCC1359_LUNG	RP11-680G10.1--GSE1	16	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	11	1	0.63	0.1549	0.029	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1359_LUNG	0.63	1	0.1839	TRUE	458	1351	185	561	0	FALSE	ACH-000901
HCC1359_LUNG	ANPEP--MT-ND4L	13	4	ANPEP	16060	chr15:90328379:-	MT-ND4L	19321	chrM:10471:+	INCL_NON_REF_SPLICE	YES	682	0	0.02	1	0.1258	0.0387	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1359_LUNG	0.02	1	0.1645	FALSE	0	1	0	16	0	FALSE	ACH-000901
HCC1359_LUNG	DSCAM--RRP1B	14	0	DSCAM	11282	chr21:41684008:-	RRP1B	58066	chr21:45111320:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1355	0	DSCAM->Down_syndrome_cell_adhesion_molecule,chr21:41382926-42219065:-,RRP1B->chr21:45079429-45115958:+,ribosomal_RNA_processing_1B	HCC1359_LUNG	1	1	0.1355	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	HSP90AB1--MT-RNR2	12	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2807	0	0	1	0.1162	0.0194	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1359_LUNG	0	1	0.1356	FALSE	13	9	0	364	0	FALSE	ACH-000901
HCC1359_LUNG	MT-ND6--MT-TE	10	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.0968	0.0871	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1359_LUNG	0.86	1	0.1839	FALSE	499	1288	110	792	0	FALSE	ACH-000901
HCC1359_LUNG	MT-TA--MT-TC	11	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1065	0.0387	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1359_LUNG	1	1	0.1452	FALSE	462	80	0	856	0	FALSE	ACH-000901
HCC1359_LUNG	RP11-634B7.4--TRIM58	10	3	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	3	41	0.81	0.24	0.0968	0.029	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	HCC1359_LUNG	0.24	0.81	0.1258	TRUE	158	633	76	73	0	FALSE	ACH-000901
HCC1359_LUNG	DNAJC17--PPP1R14D	10	0	DNAJC17	1109	chr15:41099567:-	PPP1R14D	15722	chr15:41108451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0968	0	LOCAL_REARRANGEMENT:-:[7975],DNAJC17->DnaJ_heat_shock_protein_family_(Hsp40)_member_C17,chr15:41060067-41099675:-,PPP1R14D->chr15:41107650-41120907:-,protein_phosphatase_1_regulatory_inhibitor_subunit_14D	HCC1359_LUNG	1	1	0.0968	TRUE	0	1	0	1	1	TRUE	ACH-000901
HCC1359_LUNG	RUNX1--AF127577.8	9	4	RUNX1	21108	chr21:36421139:-	AF127577.8	45906	chr21:16318876:+	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.0871	0.0387	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,AF127577.8->chr21:16290855-16319417:+	HCC1359_LUNG	0.87	1	0.1258	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	RP11-444D3.1--SOX5	9	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0871	0.029	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HCC1359_LUNG	1	1	0.1161	TRUE	477	1352	189	275	0	FALSE	ACH-000901
HCC1359_LUNG	USP39--MAT2A	9	3	USP39	9290	chr2:85852814:+	MAT2A	26651	chr2:85770024:+	ONLY_REF_SPLICE	YES	114	511	0.1	0.02	0.0871	0.029	LOCAL_REARRANGEMENT:+:[57576],USP39->Oncogene{Bushman},chr2:85829979-85876403:+,ubiquitin_specific_peptidase_39,MAT2A->chr2:85766288-85772403:+,methionine_adenosyltransferase_2A	HCC1359_LUNG	0.02	0.1	0.1161	TRUE	0	0	0	1	0	FALSE	ACH-000901
HCC1359_LUNG	GNAZ--LRP1B	8	5	GNAZ	3574	chr22:23438605:+	LRP1B	57501	chr2:141359208:-	ONLY_REF_SPLICE	YES	13	0	0.5	1	0.0774	0.0484	GNAZ->G_protein_subunit_alpha_z,chr22:23412540-23467224:+,LRP1B->ArcherDX_panel,FoundationOne_panel,LDL_receptor_related_protein_1B,chr2:140988992-142889270:-	HCC1359_LUNG	0.5	1	0.1258	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	MYH9--MT2A	8	1	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	434	7	0.02	0.56	0.0774	0.0097	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HCC1359_LUNG	0.02	0.56	0.0871	TRUE	0	0	0	24	0	FALSE	ACH-000901
HCC1359_LUNG	C15orf57--CBX3	6	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	29	55	0.33	0.2	0.0581	0.0774	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1359_LUNG	0.2	0.33	0.1355	TRUE	267	562	48	632	0	FALSE	ACH-000901
HCC1359_LUNG	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0678	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1359_LUNG	1	1	0.0678	FALSE	462	80	0	856	0	FALSE	ACH-000901
HCC1359_LUNG	EEF2--MT2A	5	6	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	2062	7	0.01	0.61	0.0484	0.0581	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HCC1359_LUNG	0.01	0.61	0.1065	TRUE	1	0	0	19	0	FALSE	ACH-000901
HCC1359_LUNG	C15orf57--CBX3	4	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	29	59	0.28	0.16	0.0387	0.0678	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1359_LUNG	0.16	0.28	0.1065	TRUE	267	562	48	632	0	FALSE	ACH-000901
HCC1359_LUNG	RP11-96H19.1--RP11-446N19.1	5	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0484	0.029	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1359_LUNG	0.8	1	0.0774	FALSE	515	4851	409	746	0	FALSE	ACH-000901
HCC1359_LUNG	MT-ND6--MT-TE	5	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0484	0.0194	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1359_LUNG	0.88	1	0.0678	FALSE	499	1288	110	792	0	FALSE	ACH-000901
HCC1359_LUNG	EEF2--MT2A	4	5	EEF2	9846	chr19:3976466:-	MT2A	13683	chr16:56642535:+	INCL_NON_REF_SPLICE	YES	1864	6	0	0.6	0.0387	0.0484	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HCC1359_LUNG	0	0.6	0.0871	FALSE	1	0	0	19	0	FALSE	ACH-000901
HCC1359_LUNG	EEF2--MT2A	4	4	EEF2	7125	chr19:3979343:-	MT2A	13651	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	3274	6	0	0.57	0.0387	0.0387	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HCC1359_LUNG	0	0.57	0.0774	FALSE	0	0	0	6	0	FALSE	ACH-000901
HCC1359_LUNG	RP11-123O10.4--GRIP1	4	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0387	0.0194	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1359_LUNG	1	1	0.0581	FALSE	416	2512	207	587	0	FALSE	ACH-000901
HCC1359_LUNG	MT-ND6--MT-TE	3	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.029	0.0484	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1359_LUNG	0.89	1	0.0774	FALSE	499	1288	110	792	0	FALSE	ACH-000901
HCC1359_LUNG	EEF2--MT2A	3	4	EEF2	8203	chr19:3978109:-	MT2A	13654	chr16:56642506:+	INCL_NON_REF_SPLICE	YES	3172	6	0	0.54	0.029	0.0387	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HCC1359_LUNG	0	0.54	0.0677	FALSE	0	0	0	2	0	FALSE	ACH-000901
HCC1359_LUNG	TUBD1--RPS6KB1	4	0	TUBD1	12167	chr17:57941025:-	RPS6KB1	20359	chr17:57987923:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0387	0	LOCAL_INVERSION:-:+:[143],TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	HCC1359_LUNG	1	1	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	GS1-124K5.12--TGFBI	2	7	GS1-124K5.12	1130	chr7:66057244:-	TGFBI	13354	chr5:135379747:+	ONLY_REF_SPLICE	YES	57	18	0.14	0.33	0.0194	0.0678	GS1-124K5.12->chr7:66010634-66057373:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HCC1359_LUNG	0.14	0.33	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	UTP18--SLC25A6	3	1	UTP18	6894	chr17:49353352:+	SLC25A6	24666	chrX:1505652:-	ONLY_REF_SPLICE	YES	184	1023	0.02	0	0.029	0.0097	UTP18->UTP18,_small_subunit_processome_component,chr17:49337889-49375297:+,SLC25A6->chrX:1505045-1511617:-,chrY:1455045-1461617:-,solute_carrier_family_25_member_6	HCC1359_LUNG	0	0.02	0.0387	FALSE	0	0	0	1	0	FALSE	ACH-000901
HCC1359_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1359_LUNG	1	1	0.029	FALSE	499	1288	110	792	0	FALSE	ACH-000901
HCC1359_LUNG	PVT1--MYC	3	0	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	HCC1359_LUNG	1	1	0.029	TRUE	3	14	0	24	0	FALSE	ACH-000901
HCC1359_LUNG	RCAN1--SAMSN1-AS1	3	0	RCAN1	1383	chr21:35987059:-	SAMSN1-AS1	21566	chr21:15967015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1,SAMSN1-AS1->SAMSN1_antisense_RNA_1,chr21:15954523-15970624:+	HCC1359_LUNG	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	VMP1--TUBD1	2	4	VMP1	7938	chr17:57816308:+	TUBD1	34149	chr17:57941208:-	ONLY_REF_SPLICE	YES	26	5	0.19	0.55	0.0194	0.0387	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_INVERSION:+:-:[17235],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,TUBD1->chr17:57936851-57970304:-,tubulin_delta_1	HCC1359_LUNG	0.19	0.55	0.0581	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	GS1-124K5.12--TGFBI	1	7	GS1-124K5.12	5666	chr7:66038372:-	TGFBI	16147	chr5:135382540:+	ONLY_REF_SPLICE	NO	70	85	0.1	0.09	0.0097	0.0678	GS1-124K5.12->chr7:66010634-66057373:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HCC1359_LUNG	0.09	0.1	0.0775	TRUE	0	0	0	1	0	FALSE	ACH-000901
HCC1359_LUNG	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0194	0.029	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1359_LUNG	0.71	1	0.0484	FALSE	407	2205	196	549	0	FALSE	ACH-000901
HCC1359_LUNG	SERPINE2--XRCC5	1	6	SERPINE2	8975	chr2:224862832:-	XRCC5	43290	chr2:217054948:+	ONLY_REF_SPLICE	YES	202	816	0.03	0.01	0.0097	0.0581	{Klijn_CCL:Lung=1},SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2,XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+	HCC1359_LUNG	0.01	0.03	0.0678	FALSE	0	0	0	1	0	FALSE	ACH-000901
HCC1359_LUNG	CAB39--AC079612.1	2	1	CAB39	1386	chr2:231577945:+	AC079612.1	19635	chr2:240504713:+	ONLY_REF_SPLICE	YES	54	0	0.05	1	0.0194	0.0097	CAB39->calcium_binding_protein_39,chr2:231577560-231685790:+,AC079612.1->chr2:240499995-240507788:+	HCC1359_LUNG	0.05	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	GS1-124K5.12--TGFBI	2	1	GS1-124K5.12	5666	chr7:66038372:-	TGFBI	18735	chr5:135385128:+	ONLY_REF_SPLICE	YES	70	66	0.04	0.04	0.0194	0.0097	GS1-124K5.12->chr7:66010634-66057373:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HCC1359_LUNG	0.04	0.04	0.0291	TRUE	0	0	0	1	0	FALSE	ACH-000901
HCC1359_LUNG	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0.0097	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1359_LUNG	1	1	0.0291	TRUE	62	24	1	171	0	FALSE	ACH-000901
HCC1359_LUNG	VMP1--TUBD1	1	5	VMP1	6827	chr17:57814904:+	TUBD1	32995	chr17:57944110:-	ONLY_REF_SPLICE	YES	68	2	0.08	0.75	0.0097	0.0484	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_INVERSION:+:-:[17235],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,TUBD1->chr17:57936851-57970304:-,tubulin_delta_1	HCC1359_LUNG	0.08	0.75	0.0581	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	AGO3--GLIS1	2	0	AGO3	2900	chr1:36411464:+	GLIS1	43236	chr1:54065951:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+,GLIS1->GLIS_family_zinc_finger_1,chr1:53971910-54199877:-	HCC1359_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000901
HCC1359_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0097	0.029	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1359_LUNG	0.67	1	0.0387	FALSE	275	511	55	178	0	FALSE	ACH-000901
HCC1359_LUNG	FUT10--AGAP1	1	1	FUT10	2599	chr8:33319006:-	AGAP1	24785	chr2:236649607:+	ONLY_REF_SPLICE	YES	17	34	0.11	0.06	0.0097	0.0097	FUT10->chr8:33228342-33330940:-,fucosyltransferase_10,AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+	HCC1359_LUNG	0.06	0.11	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000901
HCC1359_LUNG	LY6K--SET	1	1	LY6K	2603	chr8:143783131:+	SET	13677	chr9:131453449:+	ONLY_REF_SPLICE	YES	1731	223	0	0.01	0.0097	0.0097	LY6K->chr8:143781529-143786545:+,lymphocyte_antigen_6_complex,_locus_K,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1359_LUNG	0	0.01	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000901
HCC1359_LUNG	MYO10--BASP1	1	1	MYO10	1476	chr5:16935897:-	BASP1	57021	chr5:17275317:+	ONLY_REF_SPLICE	YES	205	622	0.01	0	0.0097	0.0097	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},MYO10->chr5:16665395-16936372:-,myosin_X,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	HCC1359_LUNG	0	0.01	0.0194	FALSE	0	0	0	3	0	FALSE	ACH-000901
HCC1359_LUNG	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0097	0.0097	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HCC1359_LUNG	1	1	0.0194	TRUE	274	363	69	150	0	FALSE	ACH-000901
HCC1359_LUNG	RP5-1158E12.3--KDM6A	1	1	RP5-1158E12.3	3112	chrX:45708809:-	KDM6A	8911	chrX:44820529:+	ONLY_REF_SPLICE	YES	0	21	1	0.09	0.0097	0.0097	RP5-1158E12.3->chrX:45707328-45710920:-,KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A	HCC1359_LUNG	0.09	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000901
NCIH889_LUNG	RLF--MYCL	3390	1567	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	15	361	1	0.93	38.6468	17.8642	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH889_LUNG	0.93	1	56.511	TRUE	0	0	0	10	0	TRUE	ACH-000297
NCIH889_LUNG	RLF--MYCL	2148	2484	RLF	1264	chr1:40627308:+	MYCL	18060	chr1:40367115:-	ONLY_REF_SPLICE	YES	15	15	1	1	24.4877	28.3182	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH889_LUNG	1	1	52.8059	TRUE	0	0	0	6	0	TRUE	ACH-000297
NCIH889_LUNG	RLF--MYCL	11	1616	RLF	1263	chr1:40627307:+	MYCL	20873	chr1:40363661:-	INCL_NON_REF_SPLICE	YES	15	388	0.99	0.81	0.1254	18.4228	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH889_LUNG	0.81	0.99	18.5482	TRUE	0	0	0	10	0	TRUE	ACH-000297
NCIH889_LUNG	RLF--MYCL	11	1529	RLF	1264	chr1:40627308:+	MYCL	20894	chr1:40363640:-	INCL_NON_REF_SPLICE	YES	15	360	0.99	0.81	0.1254	17.431	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH889_LUNG	0.81	0.99	17.5564	TRUE	0	0	0	10	0	TRUE	ACH-000297
NCIH889_LUNG	RLF--MYCL	3	1529	RLF	1271	chr1:40627315:+	MYCL	20894	chr1:40363640:-	INCL_NON_REF_SPLICE	YES	16	360	0.99	0.81	0.0342	17.431	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH889_LUNG	0.81	0.99	17.4652	TRUE	0	0	0	10	0	TRUE	ACH-000297
NCIH889_LUNG	BAGE2--CTBP2P1	55	25	BAGE2	5645	chr21:11058161:-	CTBP2P1	23085	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	99	0	0.45	1	0.627	0.285	BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	NCIH889_LUNG	0.45	1	0.912	TRUE	0	0	0	6	0	TRUE	ACH-000297
NCIH889_LUNG	RP11-123O10.4--GRIP1	55	17	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	9	1	0.89	0.627	0.1938	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH889_LUNG	0.89	1	0.8208	FALSE	416	2512	207	587	0	FALSE	ACH-000297
NCIH889_LUNG	KANSL1--ARL17B	54	15	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	56	156	0.55	0.31	0.6156	0.171	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH889_LUNG	0.31	0.55	0.7866	TRUE	181	1564	124	196	0	FALSE	ACH-000297
NCIH889_LUNG	TIMM23B--LINC00843	53	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6042	0.171	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH889_LUNG	1	1	0.7752	TRUE	508	994	45	981	0	FALSE	ACH-000297
NCIH889_LUNG	CLTCL1--HIRA	43	24	CLTCL1	2325	chr22:19263146:-	HIRA	66917	chr22:19319079:-	ONLY_REF_SPLICE	YES	38	173	0.64	0.28	0.4902	0.2736	LOCAL_REARRANGEMENT:-:[38982],CLTCL1->Oncogene{Bushman},chr22:19166986-19279239:-,clathrin_heavy_chain_like_1,HIRA->chr22:19318221-19435224:-,histone_cell_cycle_regulator	NCIH889_LUNG	0.28	0.64	0.7638	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	MT-TA--MT-TC	39	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4446	0.0456	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH889_LUNG	1	1	0.4902	FALSE	462	80	0	856	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	5	104	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	40	0	0.73	1	0.057	1.1856	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.73	1	1.2426	FALSE	344	826	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	5	101	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	13	2	0.89	0.98	0.057	1.1514	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.89	0.98	1.2084	FALSE	344	826	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	3	104	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	34	0	0.76	1	0.0342	1.1856	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.76	1	1.2198	FALSE	344	826	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	3	101	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	13	1	0.89	0.99	0.0342	1.1514	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.89	0.99	1.1856	FALSE	344	826	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	11	69	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	2	0.93	0.98	0.1254	0.7866	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.93	0.98	0.912	FALSE	344	821	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	TIMM23--RP11-464F9.1	27	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	139	2	0.18	0.94	0.3078	0.0342	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH889_LUNG	0.18	0.94	0.342	TRUE	519	3926	326	965	0	FALSE	ACH-000297
NCIH889_LUNG	MAF--RP11-679B19.2	25	10	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.285	0.114	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	NCIH889_LUNG	1	1	0.399	TRUE	48	25	3	38	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND6--MT-TE	23	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2622	0.0114	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH889_LUNG	1	1	0.2736	FALSE	499	1288	110	792	0	FALSE	ACH-000297
NCIH889_LUNG	AC027612.3--AP000345.1	21	5	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	9	0	0.74	1	0.2394	0.057	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH889_LUNG	0.74	1	0.2964	TRUE	0	0	0	11	0	TRUE	ACH-000297
NCIH889_LUNG	AC104389.28--HBG1	19	12	AC104389.28	3440	chr11:5367003:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	4	1	0.89	0.97	0.2166	0.1368	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	NCIH889_LUNG	0.89	0.97	0.3534	FALSE	0	0	0	7	0	FALSE	ACH-000297
NCIH889_LUNG	ZFP69B--RP5-864K19.4	18	11	ZFP69B	4568	chr1:40923111:+	RP5-864K19.4	13531	chr1:39379212:+	ONLY_REF_SPLICE	YES	38	10	0.43	0.74	0.2052	0.1254	ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+,RP5-864K19.4->chr1:39325672-39385068:+	NCIH889_LUNG	0.43	0.74	0.3306	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	3	67	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	13	0	0.84	1	0.0342	0.7638	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.84	1	0.798	FALSE	344	826	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	AC104389.28--HBG1	19	0	AC104389.28	1084	chr11:5526799:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2166	0	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	NCIH889_LUNG	1	1	0.2166	FALSE	0	1	0	13	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	3	63	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	72	0	0.48	1	0.0342	0.7182	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.48	1	0.7524	FALSE	344	827	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	ZNF654--HMGB2	18	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2052	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH889_LUNG	1	1	0.2052	TRUE	0	0	0	518	0	FALSE	ACH-000297
NCIH889_LUNG	CLTCL1--HIRA	12	19	CLTCL1	2309	chr22:19263162:-	HIRA	66917	chr22:19319079:-	INCL_NON_REF_SPLICE	YES	36	173	0.46	0.15	0.1368	0.2166	LOCAL_REARRANGEMENT:-:[38982],CLTCL1->Oncogene{Bushman},chr22:19166986-19279239:-,clathrin_heavy_chain_like_1,HIRA->chr22:19318221-19435224:-,histone_cell_cycle_regulator	NCIH889_LUNG	0.15	0.46	0.3534	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	LINC01014--KCNMB2	15	5	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	17	102	0.54	0.16	0.171	0.057	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH889_LUNG	0.16	0.54	0.228	FALSE	12	33	18	33	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	10	23	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	593	0	0.05	1	0.114	0.2622	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.05	1	0.3762	FALSE	344	827	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND6--MT-TE	14	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.83	1	0.1596	0.057	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH889_LUNG	0.83	1	0.2166	FALSE	499	1288	110	792	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	3	48	MT-ND4	1144	chrM:10903:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	15	0	0.77	1	0.0342	0.5472	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.77	1	0.5814	FALSE	344	826	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	4	37	MT-ND4	1116	chrM:10875:+	MT-ND4L	5641	chrM:10732:+	INCL_NON_REF_SPLICE	YES	14	0	0.75	1	0.0456	0.4218	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.75	1	0.4674	FALSE	344	826	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	BAGE2--CTBP2P1	5	24	BAGE2	5645	chr21:11058161:-	CTBP2P1	23091	chrY:59001446:+	INCL_NON_REF_SPLICE	YES	99	0	0.23	1	0.057	0.2736	BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	NCIH889_LUNG	0.23	1	0.3306	TRUE	0	0	0	6	0	TRUE	ACH-000297
NCIH889_LUNG	MT-TA--MT-TC	9	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1026	0.057	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH889_LUNG	1	1	0.1596	FALSE	462	80	0	856	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	4	24	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	2	1	0.93	0.97	0.0456	0.2736	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.93	0.97	0.3192	FALSE	344	821	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	RP11-319G9.5--WWOX	9	2	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	19	1	0.37	0.1026	0.0228	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	NCIH889_LUNG	0.37	1	0.1254	FALSE	154	425	28	76	0	FALSE	ACH-000297
NCIH889_LUNG	ZC3H7B--L3MBTL2	7	9	ZC3H7B	6962	chr22:41728231:+	L3MBTL2	30662	chr22:41601204:+	INCL_NON_REF_SPLICE	YES	80	0	0.17	1	0.0798	0.1026	{Klijn_CCL:Lung=1,Ovary=1},LOCAL_REARRANGEMENT:+:[70251],ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,L3MBTL2->L3MBTL2_polycomb_repressive_complex_1_subunit,chr22:41601209-41627275:+	NCIH889_LUNG	0.17	1	0.1824	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	AP000525.9--LA16c-60G3.6	9	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1026	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH889_LUNG	1	1	0.1026	TRUE	0	42	0	133	42	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	6	12	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	35	0	0.34	1	0.0684	0.1368	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.34	1	0.2052	FALSE	344	826	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	ZFP69B--RP5-864K19.4	8	3	ZFP69B	4568	chr1:40923111:+	RP5-864K19.4	14620	chr1:39384846:+	ONLY_REF_SPLICE	YES	38	14	0.22	0.44	0.0912	0.0342	ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+,RP5-864K19.4->chr1:39325672-39385068:+	NCIH889_LUNG	0.22	0.44	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	7	6	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	71	0	0.15	1	0.0798	0.0684	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.15	1	0.1482	FALSE	344	827	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	7	5	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	40	0	0.23	1	0.0798	0.057	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.23	1	0.1368	FALSE	344	826	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	ZC3H7B--L3MBTL2	6	9	ZC3H7B	6962	chr22:41728231:+	L3MBTL2	30713	chr22:41601255:+	INCL_NON_REF_SPLICE	YES	80	0	0.16	1	0.0684	0.1026	{Klijn_CCL:Lung=1,Ovary=1},LOCAL_REARRANGEMENT:+:[70251],ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,L3MBTL2->L3MBTL2_polycomb_repressive_complex_1_subunit,chr22:41601209-41627275:+	NCIH889_LUNG	0.16	1	0.171	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	5	11	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	0	0.84	1	0.057	0.1254	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.84	1	0.1824	FALSE	344	821	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	RP11-444D3.1--SOX5	6	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	11	1	0.52	0.0684	0.0684	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH889_LUNG	0.52	1	0.1368	TRUE	477	1352	189	275	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND6--MT-TE	7	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0798	0.0114	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH889_LUNG	1	1	0.0912	FALSE	499	1288	110	792	0	FALSE	ACH-000297
NCIH889_LUNG	C15orf57--CBX3	6	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	37	46	0.21	0.18	0.0684	0.0456	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH889_LUNG	0.18	0.21	0.114	TRUE	267	562	48	632	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	4	12	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	36	0	0.31	1	0.0456	0.1368	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.31	1	0.1824	FALSE	344	826	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	RP11-123O10.4--GRIP1	5	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	13	1	0.5	0.057	0.0912	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH889_LUNG	0.5	1	0.1482	FALSE	93	270	15	244	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	4	11	MT-ND4	1818	chrM:11577:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	6673	0	0	1	0.0456	0.1254	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0	1	0.171	FALSE	344	827	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	AC027612.3--AP000345.1	5	5	AC027612.3	3881	chr2:91893844:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0.057	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH889_LUNG	1	1	0.114	TRUE	0	0	0	11	0	TRUE	ACH-000297
NCIH889_LUNG	LINC01014--KCNMB2	5	5	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	17	109	0.37	0.08	0.057	0.057	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH889_LUNG	0.08	0.37	0.114	FALSE	11	60	26	37	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	4	9	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	39	0	0.25	1	0.0456	0.1026	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.25	1	0.1482	FALSE	344	826	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	47	1	0.13	0.0684	0.0114	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH889_LUNG	0.13	1	0.0798	TRUE	465	1949	224	605	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND1--MT-RNR2	5	4	MT-ND1	1435	chrM:3741:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	54	0	0.14	1	0.057	0.0456	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH889_LUNG	0.14	1	0.1026	FALSE	114	26	4	85	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND6--MT-TE	3	11	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.1254	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH889_LUNG	1	1	0.1596	FALSE	499	1288	110	792	0	FALSE	ACH-000297
NCIH889_LUNG	ZC3H7B--L3MBTL2	4	7	ZC3H7B	6962	chr22:41728231:+	L3MBTL2	33731	chr22:41605700:+	ONLY_REF_SPLICE	YES	80	8	0.12	0.58	0.0456	0.0798	{Klijn_CCL:Lung=1,Ovary=1},LOCAL_REARRANGEMENT:+:[70251],ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,L3MBTL2->L3MBTL2_polycomb_repressive_complex_1_subunit,chr22:41601209-41627275:+	NCIH889_LUNG	0.12	0.58	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	MT-ND6--MT-TE	4	6	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.71	1	0.0456	0.0684	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH889_LUNG	0.71	1	0.114	FALSE	499	1288	110	792	0	FALSE	ACH-000297
NCIH889_LUNG	CLTCL1--HIRA	4	5	CLTCL1	1117	chr22:19279123:-	HIRA	66917	chr22:19319079:-	ONLY_REF_SPLICE	YES	37	173	0.2	0.05	0.0456	0.057	LOCAL_REARRANGEMENT:-:[38982],CLTCL1->Oncogene{Bushman},chr22:19166986-19279239:-,clathrin_heavy_chain_like_1,HIRA->chr22:19318221-19435224:-,histone_cell_cycle_regulator	NCIH889_LUNG	0.05	0.2	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	RP11-141M1.3--STARD13	4	2	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0456	0.0228	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NCIH889_LUNG	1	1	0.0684	FALSE	141	264	50	91	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	3	5	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	39	0	0.17	1	0.0342	0.057	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	0.17	1	0.0912	FALSE	344	826	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND6--MT-TE	3	5	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0342	0.057	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH889_LUNG	0.89	1	0.0912	FALSE	499	1288	110	792	0	FALSE	ACH-000297
NCIH889_LUNG	OTUD7A--RP11-64J4.2	4	1	OTUD7A	1283	chr15:32162710:-	RP11-64J4.2	28061	chr17:3182447:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0456	0.0114	OTUD7A->OTU_deubiquitinase_7A,chr15:31775329-32162992:-,RP11-64J4.2->chr17:3182069-3289633:-	NCIH889_LUNG	0.83	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	RP11-1102P16.1--EYA1	4	1	RP11-1102P16.1	7994	chr8:72447979:-	EYA1	19218	chr8:72268746:-	ONLY_REF_SPLICE	YES	2	10	0.71	0.33	0.0456	0.0114	NEIGHBORS[41208],RP11-1102P16.1->chr8:72315675-72504260:-,EYA1->EYA_transcriptional_coactivator_and_phosphatase_1,chr8:72109668-72274467:-	NCIH889_LUNG	0.33	0.71	0.057	FALSE	1	26	0	4	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND1--MT-RNR2	3	4	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	12	0	0.37	1	0.0342	0.0456	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH889_LUNG	0.37	1	0.0798	FALSE	114	26	4	85	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	1	1	0.0456	FALSE	344	821	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	1	1	0.0456	FALSE	344	821	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	MT-TA--MT-TC	3	4	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.0456	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH889_LUNG	1	1	0.0798	FALSE	462	80	0	856	0	FALSE	ACH-000297
NCIH889_LUNG	HSP90AB1--MT-RNR2	3	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2316	0	0	1	0.0342	0.0342	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH889_LUNG	0	1	0.0684	FALSE	13	9	0	364	0	FALSE	ACH-000297
NCIH889_LUNG	PPIE--RHBDL2	3	3	PPIE	9633	chr1:40211170:+	RHBDL2	29523	chr1:39361741:-	ONLY_REF_SPLICE	YES	2981	11	0	0.35	0.0342	0.0342	PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E,RHBDL2->chr1:39351479-39407471:-,rhomboid,_veinlet-like_2_(Drosophila)	NCIH889_LUNG	0	0.35	0.0684	FALSE	0	0	0	1	0	FALSE	ACH-000297
NCIH889_LUNG	C15orf57--CBX3	3	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	36	48	0.12	0.09	0.0342	0.0228	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH889_LUNG	0.09	0.12	0.057	TRUE	267	562	48	632	0	FALSE	ACH-000297
NCIH889_LUNG	HSP90AB1--MT-RNR2	3	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2329	0	0	1	0.0342	0.0228	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH889_LUNG	0	1	0.057	FALSE	13	9	0	364	0	FALSE	ACH-000297
NCIH889_LUNG	RP11-1102P16.1--EYA1	3	2	RP11-1102P16.1	11923	chr8:72383093:-	EYA1	19218	chr8:72268746:-	ONLY_REF_SPLICE	YES	2	10	0.71	0.33	0.0342	0.0228	NEIGHBORS[41208],RP11-1102P16.1->chr8:72315675-72504260:-,EYA1->EYA_transcriptional_coactivator_and_phosphatase_1,chr8:72109668-72274467:-	NCIH889_LUNG	0.33	0.71	0.057	FALSE	1	26	0	4	0	FALSE	ACH-000297
NCIH889_LUNG	HIF1A--PRKCH	3	1	HIF1A	1327	chr14:62162557:+	PRKCH	48659	chr14:61952220:+	ONLY_REF_SPLICE	YES	275	145	0.01	0.03	0.0342	0.0114	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	NCIH889_LUNG	0.01	0.03	0.0456	FALSE	1	15	1	9	1	FALSE	ACH-000297
NCIH889_LUNG	LDLRAD3--PRR5L	3	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	17578	chr11:36317840:+	INCL_NON_REF_SPLICE	YES	31	0	0.11	1	0.0342	0.0114	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	NCIH889_LUNG	0.11	1	0.0456	FALSE	0	52	1	15	0	FALSE	ACH-000297
NCIH889_LUNG	CPSF6--RAB3IP	3	0	CPSF6	1170	chr12:69633486:+	RAB3IP	22085	chr12:70149164:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	NCIH889_LUNG	1	1	0.0342	TRUE	0	0	0	3	0	TRUE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	1	1	0.0342	FALSE	344	821	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH889_LUNG	1	1	0.0342	FALSE	344	821	44	306	0	FALSE	ACH-000297
NCIH889_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH889_LUNG	1	1	0.0342	FALSE	499	1288	110	792	0	FALSE	ACH-000297
NCIH889_LUNG	WTAPP1--RUVBL1	3	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	NCIH889_LUNG	1	1	0.0342	TRUE	9	252	6	66	0	FALSE	ACH-000297
NCIH889_LUNG	RP11-680G10.1--GSE1	2	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	19	1	0.21	0.0228	0.0342	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH889_LUNG	0.21	1	0.057	TRUE	458	1351	185	561	0	FALSE	ACH-000297
NCIH889_LUNG	KANSL1--ARL17B	2	2	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	56	156	0.07	0.03	0.0228	0.0228	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH889_LUNG	0.03	0.07	0.0456	TRUE	105	90	7	93	0	FALSE	ACH-000297
NCIH889_LUNG	RP11-384F7.2--RP11-768G7.2	2	2	RP11-384F7.2	1411	chr3:117716029:-	RP11-768G7.2	6409	chr3:117408925:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0.0228	NEIGHBORS_OVERLAP:-:-:[12239],RP11-384F7.2->chr3:117391001-117716439:-,RP11-768G7.2->chr3:117397540-117409779:-	NCIH889_LUNG	1	1	0.0456	FALSE	1	0	0	1	0	FALSE	ACH-000297
NCIH889_LUNG	LDLRAD3--PRR5L	2	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	30278	chr11:36415396:+	ONLY_REF_SPLICE	YES	31	1	0.09	0.75	0.0228	0.0114	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	NCIH889_LUNG	0.09	0.75	0.0342	FALSE	12	80	1	10	0	FALSE	ACH-000297
NCIH889_LUNG	NCAM2--APP	2	1	NCAM2	1304	chr21:22370936:+	APP	43916	chr21:27425664:-	ONLY_REF_SPLICE	YES	125	1649	0.02	0	0.0228	0.0114	GTEx_v2:{count=7;pct=0.08%;dist=Brain_-_Putamen_(basal_ganglia)=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCAM2->chr21:22370633-22915650:+,neural_cell_adhesion_molecule_2,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	NCIH889_LUNG	0	0.02	0.0342	FALSE	0	0	0	1	0	FALSE	ACH-000297
NCIH889_LUNG	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	4	0.6	0.43	0.0228	0.0114	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH889_LUNG	0.43	0.6	0.0342	FALSE	16	356	14	466	0	FALSE	ACH-000297
NCIH889_LUNG	RP11-120D5.1--MID1	2	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	4	0.75	0.43	0.0228	0.0114	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH889_LUNG	0.43	0.75	0.0342	FALSE	0	48	1	163	0	FALSE	ACH-000297
NCIH889_LUNG	RP11-444D3.1--SOX5	1	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	11	1	0.35	0.0114	0.057	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH889_LUNG	0.35	1	0.0684	TRUE	274	363	69	150	0	FALSE	ACH-000297
NCIH889_LUNG	SHFM1--DLX6-AS1	2	1	SHFM1	7020	chr7:96324110:-	DLX6-AS1	31487	chr7:96598430:-	ONLY_REF_SPLICE	YES	749	1317	0	0	0.0228	0.0114	SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-	NCIH889_LUNG	0	0	0.0342	FALSE	0	1	0	6	0	FALSE	ACH-000297
NCIH889_LUNG	AC104389.28--HBG1	2	0	AC104389.28	1302	chr11:5526581:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	NCIH889_LUNG	1	1	0.0228	FALSE	0	1	0	13	0	FALSE	ACH-000297
NCIH889_LUNG	C6orf106--SQSTM1	2	0	C6orf106	6238	chr6:34574332:-	SQSTM1	26943	chr5:179260032:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	PROTCLUST,C6orf106->chr6:34555065-34664636:-,chromosome_6_open_reading_frame_106,SQSTM1->chr5:179233388-179265078:+,sequestosome_1	NCIH889_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	DLX6-AS1--SHFM1	2	0	DLX6-AS1	1141	chr7:96643237:-	SHFM1	30560	chr7:96324203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	NCIH889_LUNG	1	1	0.0228	TRUE	0	2	0	4	2	TRUE	ACH-000297
NCIH889_LUNG	DTNA--NOL4	2	0	DTNA	1225	chr18:32073478:+	NOL4	75085	chr18:31432999:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha,NOL4->chr18:31431064-31804916:-,nucleolar_protein_4	NCIH889_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	GALNT7--ZNF124	2	0	GALNT7	1209	chr4:174090112:+	ZNF124	29807	chr1:247287173:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GALNT7->chr4:174089904-174245118:+,polypeptide_N-acetylgalactosaminyltransferase_7,ZNF124->chr1:247285277-247335318:-,zinc_finger_protein_124	NCIH889_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	MCM4--TM9SF2	2	0	MCM4	3222	chr8:48874966:+	TM9SF2	25158	chr13:100181721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4,TM9SF2->chr13:100153671-100216260:+,transmembrane_9_superfamily_member_2	NCIH889_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	POLR3K--LUC7L	2	0	POLR3K	2738	chr16:101558:-	LUC7L	14274	chr16:258187:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K,LUC7L->LUC7_like,chr16:238968-279462:-	NCIH889_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	RP11-324C10.1--NLGN1	2	0	RP11-324C10.1	2141	chr3:172977603:+	NLGN1	14253	chr3:173322069:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	NEIGHBORS[59319],RP11-324C10.1->chr3:172871527-173054755:+,NLGN1->chr3:173114074-174004434:+,neuroligin_1	NCIH889_LUNG	1	1	0.0228	FALSE	0	4	0	4	0	FALSE	ACH-000297
NCIH889_LUNG	SF1--RACGAP1	2	0	SF1	3289	chr11:64543970:-	RACGAP1	24554	chr12:50400419:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	SF1->chr11:64532078-64546258:-,splicing_factor_1,RACGAP1->Rac_GTPase_activating_protein_1,chr12:50370706-50426919:-	NCIH889_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	VWDE--PHF14	2	0	VWDE	1283	chr7:12443285:-	PHF14	36948	chr7:11021999:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH889_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000297
NCIH889_LUNG	AP003900.6--PSPC1	1	2	AP003900.6	3299	chr21:11174002:+	PSPC1	15331	chr13:20283739:-	ONLY_REF_SPLICE	YES	7	244	0.3	0.01	0.0114	0.0228	AP003900.6->chr21:11169720-11184046:+,PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	NCIH889_LUNG	0.01	0.3	0.0342	FALSE	0	0	0	1	0	FALSE	ACH-000297
NCIH889_LUNG	EPS8--LMO3	1	2	EPS8	3576	chr12:15942095:-	LMO3	43833	chr12:16753802:-	ONLY_REF_SPLICE	NO	43	308	0.07	0.01	0.0114	0.0228	EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,LMO3->LIM_domain_only_3,Oncogene{Bushman},chr12:16701307-16763528:-	NCIH889_LUNG	0.01	0.07	0.0342	FALSE	0	0	0	1	0	FALSE	ACH-000297
NCIH889_LUNG	EPS8--LMO3	1	2	EPS8	3576	chr12:15942095:-	LMO3	49284	chr12:16713472:-	ONLY_REF_SPLICE	YES	43	261	0.07	0.01	0.0114	0.0228	EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,LMO3->LIM_domain_only_3,Oncogene{Bushman},chr12:16701307-16763528:-	NCIH889_LUNG	0.01	0.07	0.0342	FALSE	0	0	0	1	0	FALSE	ACH-000297
NCIH889_LUNG	PPIE--HEYL	1	2	PPIE	6506	chr1:40207593:+	HEYL	23395	chr1:40098387:-	ONLY_REF_SPLICE	NO	3767	39	0	0.07	0.0114	0.0228	LOCAL_INVERSION:+:-:[52237],PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E,HEYL->chr1:40089825-40105617:-,hes_related_family_bHLH_transcription_factor_with_YRPW_motif-like	NCIH889_LUNG	0	0.07	0.0342	FALSE	0	0	0	1	0	FALSE	ACH-000297
NCIH889_LUNG	RP11-141M1.3--STARD13	1	2	RP11-141M1.3	6791	chr13:34094095:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0114	0.0228	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NCIH889_LUNG	1	1	0.0342	FALSE	1	2	1	7	0	FALSE	ACH-000297
NCIH889_LUNG	RP11-384F7.2--RP11-768G7.2	1	2	RP11-384F7.2	1411	chr3:117716029:-	RP11-768G7.2	6412	chr3:117408922:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0114	0.0228	NEIGHBORS_OVERLAP:-:-:[12239],RP11-384F7.2->chr3:117391001-117716439:-,RP11-768G7.2->chr3:117397540-117409779:-	NCIH889_LUNG	1	1	0.0342	FALSE	1	0	0	1	0	FALSE	ACH-000297
NCIH889_LUNG	ADAM17--YWHAQ	1	1	ADAM17	1284	chr2:9695638:-	YWHAQ	29763	chr2:9731644:-	ONLY_REF_SPLICE	YES	61	1108	0.03	0	0.0114	0.0114	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[28180],ADAM17->ADAM_metallopeptidase_domain_17,chr2:9628615-9695921:-,YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta	NCIH889_LUNG	0	0.03	0.0228	FALSE	0	4	0	5	2	FALSE	ACH-000297
NCIH889_LUNG	AP003900.6--PSPC1	1	1	AP003900.6	1122	chr21:11169841:+	PSPC1	19535	chr13:20251963:-	ONLY_REF_SPLICE	NO	3	58	0.4	0.03	0.0114	0.0114	AP003900.6->chr21:11169720-11184046:+,PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	NCIH889_LUNG	0.03	0.4	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000297
NCIH889_LUNG	CPSF6--TP53BP1	1	1	CPSF6	11046	chr12:69656342:+	TP53BP1	30672	chr15:43762264:-	ONLY_REF_SPLICE	YES	194	90	0.01	0.02	0.0114	0.0114	GTEx_v2:{count=2;pct=0.02%;dist=Pituitary=1,Cells_-_EBV-transformed_lymphocytes=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	NCIH889_LUNG	0.01	0.02	0.0228	FALSE	0	0	0	3	0	FALSE	ACH-000297
NCIH889_LUNG	DTNA--NOL4	1	1	DTNA	8900	chr18:32259556:+	NOL4	60551	chr18:31709984:-	ONLY_REF_SPLICE	NO	125	428	0.02	0	0.0114	0.0114	DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha,NOL4->chr18:31431064-31804916:-,nucleolar_protein_4	NCIH889_LUNG	0	0.02	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000297
NCIH889_LUNG	LDLRAD3--PRR5L	1	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	20830	chr11:36350668:+	ONLY_REF_SPLICE	YES	31	1	0.06	0.67	0.0114	0.0114	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	NCIH889_LUNG	0.06	0.67	0.0228	FALSE	2	24	3	12	0	FALSE	ACH-000297
NCIH889_LUNG	PPIE--HEYL	1	1	PPIE	4950	chr1:40205935:+	HEYL	23395	chr1:40098387:-	ONLY_REF_SPLICE	YES	2705	39	0	0.05	0.0114	0.0114	LOCAL_INVERSION:+:-:[52237],PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E,HEYL->chr1:40089825-40105617:-,hes_related_family_bHLH_transcription_factor_with_YRPW_motif-like	NCIH889_LUNG	0	0.05	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000297
NCIH889_LUNG	RP11-1102P16.1--EYA1	1	1	RP11-1102P16.1	7994	chr8:72447979:-	EYA1	21396	chr8:72246409:-	ONLY_REF_SPLICE	YES	2	9	0.5	0.18	0.0114	0.0114	NEIGHBORS[41208],RP11-1102P16.1->chr8:72315675-72504260:-,EYA1->EYA_transcriptional_coactivator_and_phosphatase_1,chr8:72109668-72274467:-	NCIH889_LUNG	0.18	0.5	0.0228	FALSE	0	24	0	3	0	FALSE	ACH-000297
NCIH889_LUNG	RP5-864K19.4--HPCAL4	1	1	RP5-864K19.4	1240	chr1:39325911:+	HPCAL4	10361	chr1:40150283:-	ONLY_REF_SPLICE	YES	63	6	0.03	0.25	0.0114	0.0114	RP5-864K19.4->chr1:39325672-39385068:+,HPCAL4->chr1:40144320-40157361:-,hippocalcin_like_4	NCIH889_LUNG	0.03	0.25	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000297
OAW28_OVARY	PTPN11--TRPM8	433	110	PTPN11	1775	chr12:112856929:+	TRPM8	49615	chr2:234888832:+	ONLY_REF_SPLICE	YES	159	0	0.77	1	3.968	1.008	PTPN11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:112856155-112947717:+,protein_tyrosine_phosphatase,_non-receptor_type_11,TRPM8->chr2:234826043-234928166:+,transient_receptor_potential_cation_channel_subfamily_M_member_8	OAW28_OVARY	0.77	1	4.976	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	LAMA3--RBBP8	270	42	LAMA3	7188	chr18:21333776:+	RBBP8	99550	chr18:20562181:+	ONLY_REF_SPLICE	YES	25	17	0.93	0.95	2.4743	0.3849	{Klijn_CCL:Ovary=1},LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,RBBP8->Oncogene{Bushman},chr18:20378224-20606451:+,retinoblastoma_binding_protein_8	OAW28_OVARY	0.93	0.95	2.8592	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SMARCA4--C19orf38	266	52	SMARCA4	1253	chr19:11071850:+	C19orf38	47936	chr19:10959117:+	ONLY_REF_SPLICE	YES	33	0	0.91	1	2.4376	0.4765	LOCAL_REARRANGEMENT:+:[91132],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	OAW28_OVARY	0.91	1	2.9141	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PPFIBP1--SMCO2	218	59	PPFIBP1	4200	chr12:27731172:+	SMCO2	45492	chr12:27627719:+	ONLY_REF_SPLICE	YES	444	2	0.38	0.99	1.9977	0.5407	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	OAW28_OVARY	0.38	0.99	2.5384	TRUE	0	1	0	5	1	TRUE	ACH-000116
OAW28_OVARY	PPP2R2A--SNX14	202	35	PPP2R2A	3250	chr8:26151256:+	SNX14	29108	chr6:86284096:-	ONLY_REF_SPLICE	YES	32	151	0.88	0.61	1.8511	0.3207	PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha,SNX14->chr6:86215214-86303874:-,sorting_nexin_14	OAW28_OVARY	0.61	0.88	2.1718	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MXRA8--SMUG1	157	24	MXRA8	6481	chr1:1289228:-	SMUG1	16438	chr12:54575431:-	ONLY_REF_SPLICE	YES	710	61	0.2	0.75	1.4387	0.2199	MXRA8->chr1:1288069-1297157:-,matrix-remodelling_associated_8,SMUG1->chr12:54558529-54582778:-,single-strand-selective_monofunctional_uracil-DNA_glycosylase_1	OAW28_OVARY	0.2	0.75	1.6586	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MT-TA--MT-TN	157	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4387	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OAW28_OVARY	1	1	1.4387	FALSE	369	2501	205	193	0	FALSE	ACH-000116
OAW28_OVARY	RWDD1--FAM26D	150	26	RWDD1	1289	chr6:116892818:+	FAM26D	18718	chr6:116864928:+	ONLY_REF_SPLICE	YES	111	1	0.61	0.99	1.3746	0.2383	LOCAL_REARRANGEMENT:+:[12499],RWDD1->RWD_domain_containing_1,chr6:116892530-116918838:+,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	OAW28_OVARY	0.61	0.99	1.6129	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PPFIBP1--SMCO2	128	71	PPFIBP1	7725	chr12:27786393:+	SMCO2	45492	chr12:27627719:+	ONLY_REF_SPLICE	YES	557	2	0.26	0.99	1.173	0.6506	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	OAW28_OVARY	0.26	0.99	1.8236	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	TIMM23B--LINC00843	119	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0905	0.1924	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OAW28_OVARY	1	1	1.2829	TRUE	508	994	45	981	0	FALSE	ACH-000116
OAW28_OVARY	BCAR3--ALG14	115	34	BCAR3	8673	chr1:94140170:-	ALG14	33744	chr1:95492816:-	ONLY_REF_SPLICE	YES	24	41	0.86	0.78	1.0539	0.3116	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-	OAW28_OVARY	0.78	0.86	1.3655	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RWDD1--FAM26D	93	42	RWDD1	3733	chr6:116895334:+	FAM26D	18718	chr6:116864928:+	ONLY_REF_SPLICE	YES	120	1	0.53	0.99	0.8522	0.3849	LOCAL_REARRANGEMENT:+:[12499],RWDD1->RWD_domain_containing_1,chr6:116892530-116918838:+,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	OAW28_OVARY	0.53	0.99	1.2371	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RAPGEF6--BCL2L1	96	21	RAPGEF6	4487	chr5:130928076:-	BCL2L1	50991	chr20:30253889:-	ONLY_REF_SPLICE	YES	3	446	0.97	0.21	0.8797	0.1924	RAPGEF6->Rap_guanine_nucleotide_exchange_factor_6,chr5:130759614-130970929:-,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	OAW28_OVARY	0.21	0.97	1.0721	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	TIMM23--RP11-464F9.1	68	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	128	5	0.35	0.93	0.6231	0.0183	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OAW28_OVARY	0.35	0.93	0.6414	TRUE	519	3926	326	965	0	FALSE	ACH-000116
OAW28_OVARY	XPR1--RP11-46A10.2	62	12	XPR1	2319	chr1:180651547:+	RP11-46A10.2	26415	chr1:180875815:+	INCL_NON_REF_SPLICE	YES	60	0	0.55	1	0.5682	0.11	NEIGHBORS[16400],XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,RP11-46A10.2->chr1:180875787-180878302:+	OAW28_OVARY	0.55	1	0.6782	FALSE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	PPFIBP1--SMCO2	44	25	PPFIBP1	1935	chr12:27677298:+	SMCO2	45492	chr12:27627719:+	ONLY_REF_SPLICE	YES	429	2	0.14	0.97	0.4032	0.2291	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	OAW28_OVARY	0.14	0.97	0.6323	TRUE	0	2	0	3	1	TRUE	ACH-000116
OAW28_OVARY	MT-TA--MT-TC	43	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3941	0.055	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OAW28_OVARY	1	1	0.4491	FALSE	462	80	0	856	0	FALSE	ACH-000116
OAW28_OVARY	MT-ND6--MT-TE	42	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3849	0.0183	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OAW28_OVARY	1	1	0.4032	FALSE	499	1288	110	792	0	FALSE	ACH-000116
OAW28_OVARY	MAP4--CBFA2T3	39	9	MAP4	3829	chr3:48040128:-	CBFA2T3	45193	chr16:88968064:-	ONLY_REF_SPLICE	YES	192	0	0.2	1	0.3574	0.0825	{Klijn_CCL:Ovary=1},MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-	OAW28_OVARY	0.2	1	0.4399	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CDK5RAP2--C5	37	8	CDK5RAP2	33807	chr9:123182066:-	C5	80659	chr9:123742532:-	ONLY_REF_SPLICE	YES	120	7	0.27	0.87	0.3391	0.0733	CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,C5->chr9:123714616-123812554:-,complement_component_5	OAW28_OVARY	0.27	0.87	0.4124	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	XPR1--KIAA1614	33	20	XPR1	2319	chr1:180651547:+	KIAA1614	28290	chr1:180885290:+	ONLY_REF_SPLICE	YES	60	0	0.47	1	0.3024	0.1833	NEIGHBORS[22903],XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,KIAA1614->KIAA1614,chr1:180882290-180920750:+	OAW28_OVARY	0.47	1	0.4857	FALSE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	SYT14--DIEXF	37	2	SYT14	2133	chr1:210126101:+	DIEXF	32331	chr1:210024549:+	ONLY_REF_SPLICE	YES	2	11	0.95	0.78	0.3391	0.0183	LOCAL_REARRANGEMENT:+:[80628],SYT14->chr1:210111538-210337636:+,synaptotagmin_14,DIEXF->chr1:210001352-210030910:+,digestive_organ_expansion_factor_homolog_(zebrafish)	OAW28_OVARY	0.78	0.95	0.3574	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	EBF4--TMEM50B	32	8	EBF4	5736	chr20:2690288:+	TMEM50B	24804	chr21:34828404:-	ONLY_REF_SPLICE	YES	0	53	1	0.43	0.2932	0.0733	EBF4->chr20:2673524-2740753:+,early_B-cell_factor_4,TMEM50B->chr21:34804792-34852318:-,transmembrane_protein_50B	OAW28_OVARY	0.43	1	0.3665	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MT-ND6--MT-TE	33	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3024	0.0183	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OAW28_OVARY	1	1	0.3207	FALSE	499	1288	110	792	0	FALSE	ACH-000116
OAW28_OVARY	GPR113--OTOF	33	0	GPR113	2107	chr2:26568579:-	OTOF	41920	chr2:26694018:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3024	0	GPR113->chr2:26531041-26569685:-,OTOF->Oncogene{Bushman},chr2:26680071-26781566:-,otoferlin	OAW28_OVARY	1	1	0.3024	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SMARCA4--C19orf38	26	26	SMARCA4	1253	chr19:11071850:+	C19orf38	49035	chr19:10960935:+	ONLY_REF_SPLICE	YES	33	15	0.61	0.78	0.2383	0.2383	LOCAL_REARRANGEMENT:+:[91132],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	OAW28_OVARY	0.61	0.78	0.4766	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	ARHGAP26--KM-PA-2	31	4	ARHGAP26	18023	chr5:142311690:+	KM-PA-2	49181	chr8:145319974:-	ONLY_REF_SPLICE	YES	5	0	0.88	1	0.2841	0.0367	ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+,KM-PA-2->chr8:145317003-145331153:-	OAW28_OVARY	0.88	1	0.3208	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	TTC27--BIRC6	31	3	TTC27	3657	chr2:32859072:+	BIRC6	106693	chr2:32828073:+	ONLY_REF_SPLICE	YES	15	24	0.69	0.59	0.2841	0.0275	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[9133],TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27,BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+	OAW28_OVARY	0.59	0.69	0.3116	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RP11-123O10.4--GRIP1	29	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2658	0.0733	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OAW28_OVARY	1	1	0.3391	FALSE	416	2512	207	587	0	FALSE	ACH-000116
OAW28_OVARY	SNX14--PPP2R2A	28	7	SNX14	12668	chr6:86267694:-	PPP2R2A	41074	chr8:26196406:+	ONLY_REF_SPLICE	YES	106	26	0.25	0.57	0.2566	0.0641	{Klijn_CCL:Ovary=1},SNX14->chr6:86215214-86303874:-,sorting_nexin_14,PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha	OAW28_OVARY	0.25	0.57	0.3207	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	WDR90--RAB40C	26	14	WDR90	10034	chr16:708344:+	RAB40C	31476	chr16:678818:+	INCL_NON_REF_SPLICE	YES	26	51	0.61	0.44	0.2383	0.1283	LOCAL_REARRANGEMENT:+:[20039],WDR90->WD_repeat_domain_90,chr16:699311-717833:+,RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+	OAW28_OVARY	0.44	0.61	0.3666	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MT-ND6--MT-TE	23	18	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.2108	0.165	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OAW28_OVARY	0.98	1	0.3758	FALSE	499	1288	110	792	0	FALSE	ACH-000116
OAW28_OVARY	MT-TA--MT-TN	4	91	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0.8339	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OAW28_OVARY	1	1	0.8706	FALSE	369	2501	205	193	0	FALSE	ACH-000116
OAW28_OVARY	MT-TA--MT-TN	20	25	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1833	0.2291	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OAW28_OVARY	1	1	0.4124	FALSE	369	2501	205	193	0	FALSE	ACH-000116
OAW28_OVARY	PPFIBP1--SMCO2	6	72	PPFIBP1	7725	chr12:27786393:+	SMCO2	43061	chr12:27623610:+	INCL_NON_REF_SPLICE	YES	557	0	0.12	1	0.055	0.6598	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	OAW28_OVARY	0.12	1	0.7148	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MT-TA--MT-TN	13	42	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1191	0.3849	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OAW28_OVARY	1	1	0.504	FALSE	369	2501	205	193	0	FALSE	ACH-000116
OAW28_OVARY	MT-TA--MT-TN	9	57	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0825	0.5223	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OAW28_OVARY	1	1	0.6048	FALSE	369	2501	205	193	0	FALSE	ACH-000116
OAW28_OVARY	RAPGEF3--NFE2	22	5	RAPGEF3	3397	chr12:48151649:-	NFE2	28854	chr12:54689088:-	ONLY_REF_SPLICE	YES	11	7	0.71	0.79	0.2016	0.0458	RAPGEF3->Rap_guanine_nucleotide_exchange_factor_3,chr12:48128455-48164823:-,NFE2->chr12:54685895-54694905:-,nuclear_factor,_erythroid_2	OAW28_OVARY	0.71	0.79	0.2474	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MT-TA--MT-TN	23	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2108	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OAW28_OVARY	1	1	0.2108	FALSE	369	2501	205	193	0	FALSE	ACH-000116
OAW28_OVARY	SMARCA4--C19orf38	8	57	SMARCA4	1808	chr19:11072405:+	C19orf38	47936	chr19:10959117:+	ONLY_REF_SPLICE	YES	55	0	0.54	1	0.0733	0.5223	LOCAL_REARRANGEMENT:+:[91132],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	OAW28_OVARY	0.54	1	0.5956	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PPFIBP1--SMCO2	3	73	PPFIBP1	7725	chr12:27786393:+	SMCO2	43006	chr12:27623555:+	ONLY_REF_SPLICE	NO	557	0	0.12	1	0.0275	0.669	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	OAW28_OVARY	0.12	1	0.6965	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MGAT3--TAB1	21	0	MGAT3	1214	chr22:39853562:+	TAB1	14829	chr22:39811011:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1924	0	LOCAL_REARRANGEMENT:+:[20284],MGAT3->chr22:39853349-39888199:+,mannosyl_(beta-1,4-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,TAB1->TGF-beta_activated_kinase_1/MAP3K7_binding_protein_1,chr22:39795746-39833065:+	OAW28_OVARY	1	1	0.1924	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CASC3--THRA	20	2	CASC3	2290	chr17:38297860:+	THRA	27033	chr17:38244495:+	ONLY_REF_SPLICE	YES	39	64	0.36	0.26	0.1833	0.0183	LOCAL_REARRANGEMENT:+:[46451],CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+,THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha	OAW28_OVARY	0.26	0.36	0.2016	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	DNAH14--CAPN2	17	12	DNAH14	3523	chr1:225117537:+	CAPN2	112997	chr1:223931802:+	ONLY_REF_SPLICE	YES	36	89	0.45	0.25	0.1558	0.11	DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14,CAPN2->calpain_2,chr1:223889295-223963720:+	OAW28_OVARY	0.25	0.45	0.2658	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MT-TA--MT-TN	12	25	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.11	0.2291	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OAW28_OVARY	1	1	0.3391	FALSE	369	2501	205	193	0	FALSE	ACH-000116
OAW28_OVARY	NPM1P24--SET	18	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.165	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OAW28_OVARY	1	1	0.165	TRUE	0	0	0	434	0	FALSE	ACH-000116
OAW28_OVARY	GMCL1--ANXA4	16	5	GMCL1	1511	chr2:70057284:+	ANXA4	27484	chr2:70008652:+	ONLY_REF_SPLICE	YES	24	20	0.47	0.51	0.1466	0.0458	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[3178],GMCL1->chr2:70056774-70108528:+,germ_cell-less,_spermatogenesis_associated_1,ANXA4->annexin_A4,chr2:69871557-70053596:+	OAW28_OVARY	0.47	0.51	0.1924	TRUE	0	2	0	2	2	TRUE	ACH-000116
OAW28_OVARY	PPFIBP1--SMCO2	2	61	PPFIBP1	4200	chr12:27731172:+	SMCO2	43006	chr12:27623555:+	ONLY_REF_SPLICE	YES	444	0	0.12	1	0.0183	0.559	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	OAW28_OVARY	0.12	1	0.5773	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PRIM2--TRPC4AP	16	4	PRIM2	6397	chr6:57190843:+	TRPC4AP	27788	chr20:33657215:-	ONLY_REF_SPLICE	YES	41	76	0.33	0.21	0.1466	0.0367	PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2,TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein	OAW28_OVARY	0.21	0.33	0.1833	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	AMOTL1--RP11-867G2.2	15	4	AMOTL1	7644	chr11:94533477:+	RP11-867G2.2	32234	chr11:94261250:+	ONLY_REF_SPLICE	YES	48	0	0.28	1	0.1375	0.0367	AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+,RP11-867G2.2->chr11:94245747-94265289:+	OAW28_OVARY	0.28	1	0.1742	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MT-TA--MT-TC	16	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1466	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OAW28_OVARY	1	1	0.1466	FALSE	462	80	0	856	0	FALSE	ACH-000116
OAW28_OVARY	SMARCA4--C19orf38	3	51	SMARCA4	1250	chr19:11071847:+	C19orf38	47924	chr19:10959105:+	INCL_NON_REF_SPLICE	YES	23	0	0.7	1	0.0275	0.4674	LOCAL_REARRANGEMENT:+:[91132],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	OAW28_OVARY	0.7	1	0.4949	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CTD-3006G17.2--GTPBP10	14	4	CTD-3006G17.2	4550	chr14:28125649:-	GTPBP10	14621	chr7:89967477:+	INCL_NON_REF_SPLICE	YES	9	0	0.67	1	0.1283	0.0367	CTD-3006G17.2->chr14:27727923-28314492:-,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	OAW28_OVARY	0.67	1	0.165	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MT-TA--MT-TC	13	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1191	0.055	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OAW28_OVARY	1	1	0.1741	FALSE	462	80	0	856	0	FALSE	ACH-000116
OAW28_OVARY	NDOR1--NELFA	13	3	NDOR1	2713	chr9:140107051:+	NELFA	14493	chr4:2010686:-	INCL_NON_REF_SPLICE	YES	32	1	0.33	0.94	0.1191	0.0275	NDOR1->NADPH_dependent_diflavin_oxidoreductase_1,chr9:140100147-140111461:+,NELFA->chr4:1984441-2043630:-,negative_elongation_factor_complex_member_A	OAW28_OVARY	0.33	0.94	0.1466	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MT-TA--MT-TN	3	42	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0.3849	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OAW28_OVARY	1	1	0.4124	FALSE	369	2501	205	193	0	FALSE	ACH-000116
OAW28_OVARY	C15orf57--CBX3	11	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	12	21	0.62	0.49	0.1008	0.0825	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OAW28_OVARY	0.49	0.62	0.1833	TRUE	267	562	48	632	0	FALSE	ACH-000116
OAW28_OVARY	AMOTL1--RP11-867G2.2	11	4	AMOTL1	7644	chr11:94533477:+	RP11-867G2.2	33360	chr11:94265062:+	ONLY_REF_SPLICE	YES	48	0	0.24	1	0.1008	0.0367	AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+,RP11-867G2.2->chr11:94245747-94265289:+	OAW28_OVARY	0.24	1	0.1375	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	NR2F1--CAST	11	1	NR2F1	5494	chr5:92924150:+	CAST	18381	chr5:96011243:+	ONLY_REF_SPLICE	YES	8	29	0.6	0.29	0.1008	0.0092	NR2F1->Oncogene{Bushman},chr5:92919043-92930321:+,nuclear_receptor_subfamily_2_group_F_member_1,CAST->calpastatin,chr5:95860971-96115299:+	OAW28_OVARY	0.29	0.6	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SHOC2--RBM20	11	1	SHOC2	5864	chr10:112745523:+	RBM20	18355	chr10:112540559:+	ONLY_REF_SPLICE	YES	34	0	0.26	1	0.1008	0.0092	LOCAL_REARRANGEMENT:+:[80074],SHOC2->SHOC2_leucine-rich_repeat_scaffold_protein,chr10:112679301-112773425:+,RBM20->RNA_binding_motif_protein_20,chr10:112404155-112599227:+	OAW28_OVARY	0.26	1	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MT-ND6--MT-TE	7	16	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0.1466	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OAW28_OVARY	1	1	0.2107	FALSE	499	1288	110	792	0	FALSE	ACH-000116
OAW28_OVARY	GMCL1--ANXA4	10	3	GMCL1	1511	chr2:70057284:+	ANXA4	30750	chr2:70031665:+	ONLY_REF_SPLICE	YES	24	160	0.35	0.08	0.0916	0.0275	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[3178],GMCL1->chr2:70056774-70108528:+,germ_cell-less,_spermatogenesis_associated_1,ANXA4->annexin_A4,chr2:69871557-70053596:+	OAW28_OVARY	0.08	0.35	0.1191	TRUE	0	2	0	2	2	TRUE	ACH-000116
OAW28_OVARY	MBD2--STARD6	10	1	MBD2	1771	chr18:51750388:-	STARD6	22841	chr18:51858229:-	ONLY_REF_SPLICE	YES	89	0	0.11	1	0.0916	0.0092	LOCAL_REARRANGEMENT:-:[99570],MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2,STARD6->StAR_related_lipid_transfer_domain_containing_6,chr18:51850728-51884334:-	OAW28_OVARY	0.11	1	0.1008	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RP11-96H19.1--RP11-446N19.1	10	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0916	0.0092	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OAW28_OVARY	0.92	1	0.1008	FALSE	515	4851	409	746	0	FALSE	ACH-000116
OAW28_OVARY	MT-TA--MT-TN	10	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0916	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OAW28_OVARY	1	1	0.0916	FALSE	369	2501	205	193	0	FALSE	ACH-000116
OAW28_OVARY	MT-TA--MT-TN	10	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0916	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OAW28_OVARY	1	1	0.0916	FALSE	369	2501	205	193	0	FALSE	ACH-000116
OAW28_OVARY	PPFIBP1--SMCO2	3	27	PPFIBP1	1935	chr12:27677298:+	SMCO2	43006	chr12:27623555:+	ONLY_REF_SPLICE	YES	429	0	0.07	1	0.0275	0.2474	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	OAW28_OVARY	0.07	1	0.2749	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RWDD1--FAM26D	7	8	RWDD1	1289	chr6:116892818:+	FAM26D	20361	chr6:116875448:+	ONLY_REF_SPLICE	YES	111	13	0.12	0.54	0.0641	0.0733	LOCAL_REARRANGEMENT:+:[12499],RWDD1->RWD_domain_containing_1,chr6:116892530-116918838:+,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	OAW28_OVARY	0.12	0.54	0.1374	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MT-ND6--MT-TE	4	17	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0.1558	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OAW28_OVARY	1	1	0.1925	FALSE	499	1288	110	792	0	FALSE	ACH-000116
OAW28_OVARY	PWWP2B--LRRC27	8	1	PWWP2B	3848	chr10:134219793:+	LRRC27	10019	chr10:134146981:+	ONLY_REF_SPLICE	YES	66	3	0.12	0.75	0.0733	0.0092	LOCAL_REARRANGEMENT:+:[15662],PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27	OAW28_OVARY	0.12	0.75	0.0825	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SMARCA4--C19orf38	1	29	SMARCA4	1808	chr19:11072405:+	C19orf38	49035	chr19:10960935:+	ONLY_REF_SPLICE	YES	55	15	0.35	0.67	0.0092	0.2658	LOCAL_REARRANGEMENT:+:[91132],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	OAW28_OVARY	0.35	0.67	0.275	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RP1-34H18.1--NAV3	8	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0733	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	OAW28_OVARY	1	1	0.0733	TRUE	254	575	65	124	0	FALSE	ACH-000116
OAW28_OVARY	RWDD1--FAM26D	6	8	RWDD1	1289	chr6:116892818:+	FAM26D	21428	chr6:116878988:+	ONLY_REF_SPLICE	YES	111	26	0.11	0.35	0.055	0.0733	LOCAL_REARRANGEMENT:+:[12499],RWDD1->RWD_domain_containing_1,chr6:116892530-116918838:+,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	OAW28_OVARY	0.11	0.35	0.1283	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RWDD1--FAM26D	1	28	RWDD1	2619	chr6:116894148:+	FAM26D	18718	chr6:116864928:+	ONLY_REF_SPLICE	NO	108	1	0.21	0.97	0.0092	0.2566	LOCAL_REARRANGEMENT:+:[12499],RWDD1->RWD_domain_containing_1,chr6:116892530-116918838:+,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	OAW28_OVARY	0.21	0.97	0.2658	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PCCA--UBAC2	7	2	PCCA	3510	chr13:100764315:+	UBAC2	48001	chr13:99992574:+	ONLY_REF_SPLICE	YES	32	262	0.22	0.03	0.0641	0.0183	GTEx&tcga_normals:3/3694=0.08%,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit,UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+	OAW28_OVARY	0.03	0.22	0.0824	TRUE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	PTPN11--TRPM8	7	2	PTPN11	1252	chr12:112856406:+	TRPM8	49615	chr2:234888832:+	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0641	0.0183	PTPN11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:112856155-112947717:+,protein_tyrosine_phosphatase,_non-receptor_type_11,TRPM8->chr2:234826043-234928166:+,transient_receptor_potential_cation_channel_subfamily_M_member_8	OAW28_OVARY	0.82	1	0.0824	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RWDD1--FAM26D	1	26	RWDD1	2112	chr6:116893641:+	FAM26D	18718	chr6:116864928:+	ONLY_REF_SPLICE	YES	117	1	0.19	0.96	0.0092	0.2383	LOCAL_REARRANGEMENT:+:[12499],RWDD1->RWD_domain_containing_1,chr6:116892530-116918838:+,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	OAW28_OVARY	0.19	0.96	0.2475	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SPRTN--DISC1	7	2	SPRTN	6299	chr1:231483671:+	DISC1	17702	chr1:231829572:+	ONLY_REF_SPLICE	YES	41	0	0.18	1	0.0641	0.0183	SPRTN->SprT-like_N-terminal_domain,chr1:231472850-231490769:+,DISC1->chr1:231762561-232177018:+,disrupted_in_schizophrenia_1	OAW28_OVARY	0.18	1	0.0824	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	WDR90--RAB40C	4	14	WDR90	10040	chr16:708350:+	RAB40C	31035	chr16:678377:+	INCL_NON_REF_SPLICE	YES	30	51	0.38	0.26	0.0367	0.1283	LOCAL_REARRANGEMENT:+:[20039],WDR90->WD_repeat_domain_90,chr16:699311-717833:+,RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+	OAW28_OVARY	0.26	0.38	0.165	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SMARCA4--C19orf38	7	1	SMARCA4	1253	chr19:11071850:+	C19orf38	50344	chr19:10966941:+	ONLY_REF_SPLICE	YES	33	81	0.2	0.09	0.0641	0.0092	LOCAL_REARRANGEMENT:+:[91132],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	OAW28_OVARY	0.09	0.2	0.0733	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CTD-2008L17.1--RP11-456O19.2	6	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	4	0	0.71	1	0.055	0.0367	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	OAW28_OVARY	0.71	1	0.0917	FALSE	20	187	4	79	0	FALSE	ACH-000116
OAW28_OVARY	MT-ND6--MT-TE	7	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OAW28_OVARY	1	1	0.0641	FALSE	499	1288	110	792	0	FALSE	ACH-000116
OAW28_OVARY	MT-TA--MT-TC	5	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0.0733	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OAW28_OVARY	1	1	0.1191	FALSE	462	80	0	856	0	FALSE	ACH-000116
OAW28_OVARY	MT-TA--MT-TN	7	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OAW28_OVARY	1	1	0.0641	FALSE	369	2501	205	193	0	FALSE	ACH-000116
OAW28_OVARY	MT-TL1--MT-RNR2	7	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OAW28_OVARY	1	1	0.0641	FALSE	7	521	16	32	0	FALSE	ACH-000116
OAW28_OVARY	GNAQ--CARM1P1	6	3	GNAQ	1359	chr9:80646016:-	CARM1P1	24148	chr9:2948282:-	ONLY_REF_SPLICE	YES	77	0	0.1	1	0.055	0.0275	GNAQ->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_q,Oncogene{Bushman},OncomapV4_panel,chr9:80331003-80646374:-,CARM1P1->chr9:2907073-3053408:-,coactivator_associated_arginine_methyltransferase_1_pseudogene_1	OAW28_OVARY	0.1	1	0.0825	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PTPN11--TRPM8	6	3	PTPN11	1775	chr12:112856929:+	TRPM8	53148	chr2:234894332:+	ONLY_REF_SPLICE	YES	159	219	0.05	0.04	0.055	0.0275	PTPN11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:112856155-112947717:+,protein_tyrosine_phosphatase,_non-receptor_type_11,TRPM8->chr2:234826043-234928166:+,transient_receptor_potential_cation_channel_subfamily_M_member_8	OAW28_OVARY	0.04	0.05	0.0825	TRUE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	CCL28--C5orf28	6	2	CCL28	3496	chr5:43388452:-	C5orf28	17743	chr5:43454145:-	ONLY_REF_SPLICE	YES	452	7	0.02	0.53	0.055	0.0183	LOCAL_REARRANGEMENT:-:[31861],CCL28->C-C_motif_chemokine_ligand_28,chr5:43376747-43412493:-,C5orf28->chr5:43444354-43483995:-,chromosome_5_open_reading_frame_28	OAW28_OVARY	0.02	0.53	0.0733	TRUE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1401	0	0	1	0.055	0.0092	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OAW28_OVARY	0	1	0.0642	FALSE	13	9	0	364	0	FALSE	ACH-000116
OAW28_OVARY	MEGF9--STOM	6	1	MEGF9	6190	chr9:123384894:-	STOM	20795	chr9:124116951:-	ONLY_REF_SPLICE	YES	26	157	0.21	0.04	0.055	0.0092	MEGF9->chr9:123363091-123476748:-,multiple_EGF_like_domains_9,STOM->chr9:124101355-124132531:-,stomatin	OAW28_OVARY	0.04	0.21	0.0642	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PRR12--RCN3	6	1	PRR12	1098	chr19:50094997:+	RCN3	26599	chr19:50046363:+	ONLY_REF_SPLICE	YES	4	198	0.64	0.03	0.055	0.0092	LOCAL_REARRANGEMENT:+:[44681],PRR12->chr19:50094900-50129696:+,proline_rich_12,RCN3->chr19:50030875-50050219:+,reticulocalbin_3	OAW28_OVARY	0.03	0.64	0.0642	TRUE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	MT-TA--MT-TN	6	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OAW28_OVARY	1	1	0.055	FALSE	369	2501	205	193	0	FALSE	ACH-000116
OAW28_OVARY	PPAP2A--USP25	6	0	PPAP2A	7358	chr5:54737679:-	USP25	13959	chr21:17135210:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.055	0	PPAP2A->chr5:54720682-54830878:-,USP25->chr21:17102344-17252377:+,ubiquitin_specific_peptidase_25	OAW28_OVARY	1	1	0.055	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CTD-2008L17.1--RP11-456O19.2	5	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	4	0	0.67	1	0.0458	0.0275	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	OAW28_OVARY	0.67	1	0.0733	FALSE	33	240	4	98	0	FALSE	ACH-000116
OAW28_OVARY	NRL--GZMB	5	2	NRL	1293	chr14:24583931:-	GZMB	11752	chr14:25103427:-	INCL_NON_REF_SPLICE	YES	6	0	0.54	1	0.0458	0.0183	NRL->chr14:24549316-24584223:-,neural_retina_leucine_zipper,GZMB->chr14:25100160-25103473:-,granzyme_B	OAW28_OVARY	0.54	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RP1-310O13.7--XKR7	5	2	RP1-310O13.7	2838	chr20:30616731:-	XKR7	8772	chr20:30582871:+	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0458	0.0183	LOCAL_INVERSION:-:+:[24366],RP1-310O13.7->chr20:30615556-30619378:-,XKR7->XK_related_7,chr20:30555805-30591190:+	OAW28_OVARY	0.78	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CTD-3006G17.2--GTPBP10	4	5	CTD-3006G17.2	4655	chr14:28125544:-	GTPBP10	14621	chr7:89967477:+	INCL_NON_REF_SPLICE	YES	9	0	0.5	1	0.0367	0.0458	CTD-3006G17.2->chr14:27727923-28314492:-,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	OAW28_OVARY	0.5	1	0.0825	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MT-ND5--MT-RNR2	5	0	MT-ND5	2195	chrM:13531:+	MT-RNR2	6378	chrM:2236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OAW28_OVARY	1	1	0.0458	FALSE	4	14	1	9	0	FALSE	ACH-000116
OAW28_OVARY	MT-TA--MT-TN	5	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OAW28_OVARY	1	1	0.0458	FALSE	369	2501	205	193	0	FALSE	ACH-000116
OAW28_OVARY	XPR1--RP11-522D2.1	5	0	XPR1	1267	chr1:180601406:+	RP11-522D2.1	27467	chr1:180531340:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:+:[65486],XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,RP11-522D2.1->chr1:180528112-180535654:+	OAW28_OVARY	1	1	0.0458	TRUE	0	13	0	1	13	TRUE	ACH-000116
OAW28_OVARY	C1orf186--SPATA5	4	3	C1orf186	8233	chr1:206241533:-	SPATA5	29675	chr4:124177171:+	ONLY_REF_SPLICE	YES	6	1	0.54	0.88	0.0367	0.0275	C1orf186->chr1:206238872-206288647:-,chromosome_1_open_reading_frame_186,SPATA5->chr4:123844229-124240605:+,spermatogenesis_associated_5	OAW28_OVARY	0.54	0.88	0.0642	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RAPGEF6--BCL2L1	3	7	RAPGEF6	3403	chr5:130938964:-	BCL2L1	50991	chr20:30253889:-	ONLY_REF_SPLICE	YES	2	446	0.83	0.02	0.0275	0.0641	RAPGEF6->Rap_guanine_nucleotide_exchange_factor_6,chr5:130759614-130970929:-,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	OAW28_OVARY	0.02	0.83	0.0916	TRUE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	XPR1--KIAA1614	2	11	XPR1	1267	chr1:180601406:+	KIAA1614	28290	chr1:180885290:+	ONLY_REF_SPLICE	YES	66	0	0.16	1	0.0183	0.1008	NEIGHBORS[22903],XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,KIAA1614->KIAA1614,chr1:180882290-180920750:+	OAW28_OVARY	0.16	1	0.1191	FALSE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	MT-TL1--MT-RNR2	4	2	MT-TL1	1104	chrM:3333:+	MT-RNR2	5603	chrM:3198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0.0183	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OAW28_OVARY	1	1	0.055	FALSE	7	521	16	32	0	FALSE	ACH-000116
OAW28_OVARY	PLA2R1--LST3	4	2	PLA2R1	17695	chr2:160833196:-	LST3	56188	chr12:21196268:+	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0367	0.0183	PLA2R1->chr2:160788519-160919121:-,phospholipase_A2_receptor_1,LST3->chr12:20968608-21243179:+	OAW28_OVARY	0.55	1	0.055	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PPFIBP1--SMCO2	1	14	PPFIBP1	4200	chr12:27731172:+	SMCO2	50047	chr12:27648613:+	ONLY_REF_SPLICE	NO	444	50	0.03	0.23	0.0092	0.1283	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	OAW28_OVARY	0.03	0.23	0.1375	TRUE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	RP11-120D5.1--MID1	4	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	6	1	0.5	0.0367	0.0183	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OAW28_OVARY	0.5	1	0.055	FALSE	16	356	14	466	0	FALSE	ACH-000116
OAW28_OVARY	RWDD1--FAM26D	1	14	RWDD1	3733	chr6:116895334:+	FAM26D	20361	chr6:116875448:+	ONLY_REF_SPLICE	YES	120	13	0.11	0.54	0.0092	0.1283	LOCAL_REARRANGEMENT:+:[12499],RWDD1->RWD_domain_containing_1,chr6:116892530-116918838:+,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	OAW28_OVARY	0.11	0.54	0.1375	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SPRTN--DISC1	4	2	SPRTN	3765	chr1:231475614:+	DISC1	17702	chr1:231829572:+	ONLY_REF_SPLICE	YES	32	0	0.16	1	0.0367	0.0183	SPRTN->SprT-like_N-terminal_domain,chr1:231472850-231490769:+,DISC1->chr1:231762561-232177018:+,disrupted_in_schizophrenia_1	OAW28_OVARY	0.16	1	0.055	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	NEDD9--CYTH4	4	1	NEDD9	1210	chr6:11382372:-	CYTH4	31904	chr22:37688662:+	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.0367	0.0092	NEDD9->chr6:11183531-11382581:-,neural_precursor_cell_expressed,_developmentally_down-regulated_9,CYTH4->chr22:37678068-37711382:+,cytohesin_4	OAW28_OVARY	0.62	1	0.0459	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PWWP2B--LRRC27	4	1	PWWP2B	3848	chr10:134219793:+	LRRC27	13212	chr10:134151069:+	ONLY_REF_SPLICE	YES	66	9	0.07	0.36	0.0367	0.0092	LOCAL_REARRANGEMENT:+:[15662],PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27	OAW28_OVARY	0.07	0.36	0.0459	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MT-ND6--MT-TE	3	4	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0.0367	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OAW28_OVARY	1	1	0.0642	FALSE	499	1288	110	792	0	FALSE	ACH-000116
OAW28_OVARY	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OAW28_OVARY	1	1	0.0367	TRUE	0	0	0	434	0	FALSE	ACH-000116
OAW28_OVARY	RWDD1--FAM26D	1	12	RWDD1	3733	chr6:116895334:+	FAM26D	21428	chr6:116878988:+	ONLY_REF_SPLICE	YES	120	26	0.1	0.33	0.0092	0.11	LOCAL_REARRANGEMENT:+:[12499],RWDD1->RWD_domain_containing_1,chr6:116892530-116918838:+,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	OAW28_OVARY	0.1	0.33	0.1192	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SYT1--NAV3	4	0	SYT1	11895	chr12:79441142:+	NAV3	46395	chr12:78510552:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	SYT1->chr12:79257773-79845788:+,synaptotagmin_1,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	OAW28_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	BCAR3--ALG14	1	11	BCAR3	8673	chr1:94140170:-	ALG14	35203	chr1:95448862:-	ONLY_REF_SPLICE	YES	24	66	0.33	0.15	0.0092	0.1008	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-	OAW28_OVARY	0.15	0.33	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SYT14--DIEXF	3	2	SYT14	2636	chr1:210126604:+	DIEXF	32331	chr1:210024549:+	ONLY_REF_SPLICE	YES	2	11	0.71	0.31	0.0275	0.0183	LOCAL_REARRANGEMENT:+:[80628],SYT14->chr1:210111538-210337636:+,synaptotagmin_14,DIEXF->chr1:210001352-210030910:+,digestive_organ_expansion_factor_homolog_(zebrafish)	OAW28_OVARY	0.31	0.71	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	ADD1--FAM193A	3	1	ADD1	26487	chr4:2927839:+	FAM193A	41823	chr4:2661539:+	ONLY_REF_SPLICE	YES	103	7	0.04	0.36	0.0275	0.0092	GTEx_v2:{count=2;pct=0.02%;dist=Breast_-_Mammary_Tissue=1,Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[LUSC:1|OV:1],ADD1->adducin_1,chr4:2845584-2931803:+,FAM193A->chr4:2626988-2734292:+,family_with_sequence_similarity_193_member_A	OAW28_OVARY	0.04	0.36	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CPSF6--CDH6	3	1	CPSF6	11046	chr12:69656342:+	CDH6	37124	chr5:31322925:+	ONLY_REF_SPLICE	YES	134	1111	0.03	0	0.0275	0.0092	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CDH6->cadherin_6,chr5:31193857-31329253:+	OAW28_OVARY	0	0.03	0.0367	FALSE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	CPSF6--PGBD2	3	1	CPSF6	11046	chr12:69656342:+	PGBD2	23586	chr1:249211478:+	ONLY_REF_SPLICE	YES	134	14	0.03	0.22	0.0275	0.0092	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Adipose_-_Subcutaneous=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	OAW28_OVARY	0.03	0.22	0.0367	TRUE	0	7	0	6	2	TRUE	ACH-000116
OAW28_OVARY	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1410	0	0	1	0.0275	0.0092	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OAW28_OVARY	0	1	0.0367	FALSE	13	9	0	364	0	FALSE	ACH-000116
OAW28_OVARY	MAP4--CBFA2T3	1	9	MAP4	4883	chr3:48028873:-	CBFA2T3	45193	chr16:88968064:-	ONLY_REF_SPLICE	NO	221	0	0.04	1	0.0092	0.0825	{Klijn_CCL:Ovary=1},MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-	OAW28_OVARY	0.04	1	0.0917	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MT-ND5--MT-RNR2	3	1	MT-ND5	2430	chrM:13766:+	MT-RNR2	5841	chrM:1699:+	INCL_NON_REF_SPLICE	YES	1723	0	0	1	0.0275	0.0092	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OAW28_OVARY	0	1	0.0367	FALSE	4	14	1	9	0	FALSE	ACH-000116
OAW28_OVARY	CPSF6--CREBZF	3	0	CPSF6	11046	chr12:69656342:+	CREBZF	25591	chr11:85371641:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	GTEx_v2:{count=3;pct=0.03%;dist=Breast_-_Mammary_Tissue=1,Cells_-_EBV-transformed_lymphocytes=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CREBZF->CREB/ATF_bZIP_transcription_factor,chr11:85370752-85393951:-	OAW28_OVARY	1	1	0.0275	TRUE	0	1	1	1	0	TRUE	ACH-000116
OAW28_OVARY	FAM53A--LETM1	3	0	FAM53A	5655	chr4:1656705:-	LETM1	29741	chr4:1821199:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	FAM53A->chr4:1619642-1686029:-,family_with_sequence_similarity_53_member_A,LETM1->chr4:1813206-1857974:-,leucine_zipper_and_EF-hand_containing_transmembrane_protein_1	OAW28_OVARY	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MT-CO1--MT-ND2	3	0	MT-CO1	1603	chrM:6506:+	MT-ND2	5988	chrM:4915:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OAW28_OVARY	1	1	0.0275	FALSE	55	19	1	13	0	FALSE	ACH-000116
OAW28_OVARY	MT-CO1--MT-ND2	3	0	MT-CO1	1598	chrM:6501:+	MT-ND2	6015	chrM:4942:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OAW28_OVARY	1	1	0.0275	FALSE	55	19	1	13	0	FALSE	ACH-000116
OAW28_OVARY	MT-ND5--MT-RNR2	3	0	MT-ND5	1735	chrM:13071:+	MT-RNR2	5832	chrM:1690:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OAW28_OVARY	1	1	0.0275	FALSE	3	14	1	9	0	FALSE	ACH-000116
OAW28_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OAW28_OVARY	1	1	0.0275	FALSE	499	1288	110	792	0	FALSE	ACH-000116
OAW28_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OAW28_OVARY	1	1	0.0275	FALSE	499	1288	110	792	0	FALSE	ACH-000116
OAW28_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1002	chrM:14672:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OAW28_OVARY	1	1	0.0275	FALSE	499	1288	110	792	0	FALSE	ACH-000116
OAW28_OVARY	YWHAE--CRK	3	0	YWHAE	1332	chr17:1303341:-	CRK	18348	chr17:1326944:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	OAW28_OVARY	1	1	0.0275	TRUE	0	1	0	2	0	FALSE	ACH-000116
OAW28_OVARY	SNX14--PPP2R2A	1	7	SNX14	12668	chr6:86267694:-	PPP2R2A	39989	chr8:26191002:+	ONLY_REF_SPLICE	YES	106	34	0.07	0.19	0.0092	0.0641	{Klijn_CCL:Ovary=1},SNX14->chr6:86215214-86303874:-,sorting_nexin_14,PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha	OAW28_OVARY	0.07	0.19	0.0733	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	EBF4--TMEM50B	2	2	EBF4	5736	chr20:2690288:+	TMEM50B	25117	chr21:34828091:-	ONLY_REF_SPLICE	YES	0	43	1	0.09	0.0183	0.0183	EBF4->chr20:2673524-2740753:+,early_B-cell_factor_4,TMEM50B->chr21:34804792-34852318:-,transmembrane_protein_50B	OAW28_OVARY	0.09	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0.0183	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OAW28_OVARY	1	1	0.0366	FALSE	467	2173	244	435	0	FALSE	ACH-000116
OAW28_OVARY	YWHAE--CRK	2	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	4706	257	0	0.02	0.0183	0.0183	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	OAW28_OVARY	0	0.02	0.0366	FALSE	6	50	7	115	0	FALSE	ACH-000116
OAW28_OVARY	CCL28--C5orf28	2	1	CCL28	1139	chr5:43412355:-	C5orf28	19129	chr5:43446659:-	ONLY_REF_SPLICE	YES	387	49	0.01	0.06	0.0183	0.0092	LOCAL_REARRANGEMENT:-:[31861],CCL28->C-C_motif_chemokine_ligand_28,chr5:43376747-43412493:-,C5orf28->chr5:43444354-43483995:-,chromosome_5_open_reading_frame_28	OAW28_OVARY	0.01	0.06	0.0275	FALSE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	FAM208B--GDI2	2	1	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	19	360	0.14	0.01	0.0183	0.0092	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	OAW28_OVARY	0.01	0.14	0.0275	FALSE	0	0	0	11	0	FALSE	ACH-000116
OAW28_OVARY	MBD2--STARD6	2	1	MBD2	1771	chr18:51750388:-	STARD6	21714	chr18:51863621:-	ONLY_REF_SPLICE	YES	89	0	0.03	1	0.0183	0.0092	LOCAL_REARRANGEMENT:-:[99570],MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2,STARD6->StAR_related_lipid_transfer_domain_containing_6,chr18:51850728-51884334:-	OAW28_OVARY	0.03	1	0.0275	TRUE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	MBD2--STARD6	2	1	MBD2	2931	chr18:51731368:-	STARD6	22841	chr18:51858229:-	ONLY_REF_SPLICE	YES	427	0	0.01	1	0.0183	0.0092	LOCAL_REARRANGEMENT:-:[99570],MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2,STARD6->StAR_related_lipid_transfer_domain_containing_6,chr18:51850728-51884334:-	OAW28_OVARY	0.01	1	0.0275	FALSE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	PLA2R1--LST3	2	1	PLA2R1	17096	chr2:160833795:-	LST3	56188	chr12:21196268:+	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0183	0.0092	PLA2R1->chr2:160788519-160919121:-,phospholipase_A2_receptor_1,LST3->chr12:20968608-21243179:+	OAW28_OVARY	0.25	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PWWP2B--LRRC27	2	1	PWWP2B	3545	chr10:134219490:+	LRRC27	10019	chr10:134146981:+	ONLY_REF_SPLICE	YES	56	3	0.05	0.5	0.0183	0.0092	LOCAL_REARRANGEMENT:+:[15662],PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27	OAW28_OVARY	0.05	0.5	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	ADD1--FAM193A	2	0	ADD1	25388	chr4:2916767:+	FAM193A	43066	chr4:2664565:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	GTEx_v2:{count=2;pct=0.02%;dist=Breast_-_Mammary_Tissue=1,Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[LUSC:1|OV:1],ADD1->adducin_1,chr4:2845584-2931803:+,FAM193A->chr4:2626988-2734292:+,family_with_sequence_similarity_193_member_A	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	BRD8--KDM3B	2	0	BRD8	10847	chr5:137501517:-	KDM3B	52313	chr5:137762664:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	BRD8->bromodomain_containing_8,chr5:137475455-137514675:-,KDM3B->chr5:137688285-137772717:+,lysine_demethylase_3B	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CALU--FAM71F1	2	0	CALU	6021	chr7:128399091:+	FAM71F1	24459	chr7:128369956:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	LOCAL_REARRANGEMENT:+:[7549],CALU->calumenin,chr7:128379346-128411861:+,FAM71F1->chr7:128349115-128371797:+,family_with_sequence_similarity_71_member_F1	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CBFA2T2--LINC00703	2	0	CBFA2T2	1227	chr20:32078107:+	LINC00703	31649	chr10:4450647:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	CBFA2T2->CBFA2/RUNX1_translocation_partner_2,chr20:32077881-32237842:+,LINC00703->chr10:4426438-4452804:+,long_intergenic_non-protein_coding_RNA_703	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CELF5--RP11-29G8.3	2	0	CELF5	1916	chr19:3225616:+	RP11-29G8.3	22765	chr13:76134889:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	CELF5->CUGBP,_Elav-like_family_member_5,chr19:3224701-3297074:+,RP11-29G8.3->chr13:76123909-76381256:+	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CTD-3006G17.2--GTPBP10	1	4	CTD-3006G17.2	4550	chr14:28125649:-	GTPBP10	14624	chr7:89967480:+	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.0092	0.0367	CTD-3006G17.2->chr14:27727923-28314492:-,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	OAW28_OVARY	0.36	1	0.0459	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	25183	chr13:114174931:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	OAW28_OVARY	1	1	0.0183	TRUE	0	3	0	1	2	TRUE	ACH-000116
OAW28_OVARY	KIAA0319L--COL8A2	2	0	KIAA0319L	4118	chr1:36019951:-	COL8A2	35013	chr1:36581353:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,COL8A2->chr1:36560837-36590821:-,collagen_type_VIII_alpha_2	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	NARS2--TENM4	2	0	NARS2	10894	chr11:78189484:-	TENM4	49334	chr11:78498128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[77957],NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PARL--SH3PXD2A	2	0	PARL	1212	chr3:183602510:-	SH3PXD2A	25278	chr10:105420872:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	PARL->chr3:183547173-183602721:-,presenilin_associated_rhomboid_like,SH3PXD2A->SH3_and_PX_domains_2A,chr10:105348285-105615301:-	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	PIK3CB--RP11-548O1.3	2	0	PIK3CB	1244	chr3:138553537:-	RP11-548O1.3	35039	chr3:138661460:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	PIK3CB->ArcherDX_panel,FoundationOne_panel,chr3:138372860-138553780:-,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_beta,RP11-548O1.3->chr3:138654031-138662862:-	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RAB30-AS1--EED	2	0	RAB30-AS1	1637	chr11:82783744:+	EED	15829	chr11:85968557:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	RAB30-AS1->RAB30_antisense_RNA_1_(head_to_head),chr11:82783108-82817761:+,EED->chr11:85955586-85989855:+,embryonic_ectoderm_development	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OAW28_OVARY	1	1	0.0183	FALSE	93	270	15	244	0	FALSE	ACH-000116
OAW28_OVARY	RP11-319G9.5--WWOX	2	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	OAW28_OVARY	1	1	0.0183	FALSE	154	425	28	76	0	FALSE	ACH-000116
OAW28_OVARY	RP11-389K14.3--DIRAS2	2	0	RP11-389K14.3	3845	chr9:93145802:-	DIRAS2	9951	chr9:93376145:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	RP11-389K14.3->chr9:93063184-93195787:-,DIRAS2->DIRAS_family_GTP_binding_RAS_like_2,chr9:93372114-93405386:-	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SCP2--MAP7	2	0	SCP2	13329	chr1:53453808:+	MAP7	32674	chr6:136742937:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	SCP2->chr1:53392901-53517375:+,sterol_carrier_protein_2,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	OAW28_OVARY	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	SNX14--PPP2R2A	1	4	SNX14	10457	chr6:86275050:-	PPP2R2A	41074	chr8:26196406:+	ONLY_REF_SPLICE	NO	101	26	0.05	0.16	0.0092	0.0367	{Klijn_CCL:Ovary=1},SNX14->chr6:86215214-86303874:-,sorting_nexin_14,PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha	OAW28_OVARY	0.05	0.16	0.0459	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CCL28--C5orf28	1	2	CCL28	6174	chr5:43381903:-	C5orf28	17743	chr5:43454145:-	ONLY_REF_SPLICE	YES	296	7	0.01	0.3	0.0092	0.0183	LOCAL_REARRANGEMENT:-:[31861],CCL28->C-C_motif_chemokine_ligand_28,chr5:43376747-43412493:-,C5orf28->chr5:43444354-43483995:-,chromosome_5_open_reading_frame_28	OAW28_OVARY	0.01	0.3	0.0275	FALSE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	0	5	1	0.38	0.0092	0.0183	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OAW28_OVARY	0.38	1	0.0275	FALSE	0	23	1	67	0	FALSE	ACH-000116
OAW28_OVARY	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0092	0.0183	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OAW28_OVARY	0.75	1	0.0275	FALSE	275	511	55	178	0	FALSE	ACH-000116
OAW28_OVARY	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0092	0.0183	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OAW28_OVARY	0.75	1	0.0275	FALSE	407	2205	196	549	0	FALSE	ACH-000116
OAW28_OVARY	C1orf186--SPATA5	1	1	C1orf186	1543	chr1:206288105:-	SPATA5	29675	chr4:124177171:+	ONLY_REF_SPLICE	NO	33	1	0.06	0.67	0.0092	0.0092	C1orf186->chr1:206238872-206288647:-,chromosome_1_open_reading_frame_186,SPATA5->chr4:123844229-124240605:+,spermatogenesis_associated_5	OAW28_OVARY	0.06	0.67	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	CCL28--C5orf28	1	1	CCL28	3496	chr5:43388452:-	C5orf28	19129	chr5:43446659:-	ONLY_REF_SPLICE	YES	452	49	0	0.04	0.0092	0.0092	LOCAL_REARRANGEMENT:-:[31861],CCL28->C-C_motif_chemokine_ligand_28,chr5:43376747-43412493:-,C5orf28->chr5:43444354-43483995:-,chromosome_5_open_reading_frame_28	OAW28_OVARY	0	0.04	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	CDK5RAP1--SNTA1	1	1	CDK5RAP1	5644	chr20:31979948:-	SNTA1	23523	chr20:32005729:-	ONLY_REF_SPLICE	NO	49	53	0.04	0.04	0.0092	0.0092	LOCAL_REARRANGEMENT:-:[6394],CDK5RAP1->CDK5_regulatory_subunit_associated_protein_1,chr20:31946645-31989367:-,SNTA1->chr20:31995761-32031698:-,syntrophin_alpha_1	OAW28_OVARY	0.04	0.04	0.0184	TRUE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	CHD4--ING4	1	1	CHD4	19377	chr12:6690210:-	ING4	29942	chr12:6765964:-	ONLY_REF_SPLICE	YES	235	1	0.01	0.67	0.0092	0.0092	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[42804],CHD4->ArcherDX_panel,FoundationOne_panel,chr12:6679249-6716642:-,chromodomain_helicase_DNA_binding_protein_4,ING4->Oncogene{Bushman},chr12:6759446-6772314:-,inhibitor_of_growth_family_member_4	OAW28_OVARY	0.01	0.67	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	CTD-3006G17.2--GTPBP10	1	1	CTD-3006G17.2	4655	chr14:28125544:-	GTPBP10	21600	chr7:89982130:+	ONLY_REF_SPLICE	YES	9	3	0.18	0.4	0.0092	0.0092	CTD-3006G17.2->chr14:27727923-28314492:-,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	OAW28_OVARY	0.18	0.4	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	MEGF9--STOM	1	1	MEGF9	6190	chr9:123384894:-	STOM	21868	chr9:124115580:-	ONLY_REF_SPLICE	NO	26	148	0.07	0.01	0.0092	0.0092	MEGF9->chr9:123363091-123476748:-,multiple_EGF_like_domains_9,STOM->chr9:124101355-124132531:-,stomatin	OAW28_OVARY	0.01	0.07	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	MXRA8--CDK11B	1	1	MXRA8	6481	chr1:1289228:-	CDK11B	20091	chr1:1573245:-	ONLY_REF_SPLICE	YES	710	42	0	0.05	0.0092	0.0092	MXRA8->chr1:1288069-1297157:-,matrix-remodelling_associated_8,CDK11B->Oncogene{Bushman},chr1:1570603-1590473:-,cyclin-dependent_kinase_11B	OAW28_OVARY	0	0.05	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000116
OAW28_OVARY	NAALADL2--KCNMB2	1	1	NAALADL2	13894	chr3:174577240:+	KCNMB2	48317	chr3:178525131:+	ONLY_REF_SPLICE	YES	18	0	0.1	1	0.0092	0.0092	NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	OAW28_OVARY	0.1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000116
OAW28_OVARY	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0092	0.0092	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	OAW28_OVARY	1	1	0.0184	FALSE	81	155	12	160	0	FALSE	ACH-000116
OAW28_OVARY	SPRTN--DISC1	1	1	SPRTN	2501	chr1:231474350:+	DISC1	17702	chr1:231829572:+	ONLY_REF_SPLICE	NO	20	0	0.09	1	0.0092	0.0092	SPRTN->SprT-like_N-terminal_domain,chr1:231472850-231490769:+,DISC1->chr1:231762561-232177018:+,disrupted_in_schizophrenia_1	OAW28_OVARY	0.09	1	0.0184	TRUE	0	0	0	2	0	TRUE	ACH-000116
OAW28_OVARY	TEAD1--CMAS	1	1	TEAD1	2140	chr11:12697108:+	CMAS	30197	chr12:22208083:+	ONLY_REF_SPLICE	YES	23	147	0.08	0.01	0.0092	0.0092	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	OAW28_OVARY	0.01	0.08	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000116
HCT116_LARGE_INTESTINE	AC104389.28--HBE1	325	417	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	308	1	0.71	1	3.8739	4.9705	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HCT116_LARGE_INTESTINE	0.71	1	8.8444	TRUE	0	48	0	65	48	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	COMMD10--AP3S1	221	221	COMMD10	4974	chr5:115428397:+	AP3S1	24067	chr5:115230784:+	ONLY_REF_SPLICE	YES	144	2038	0.75	0.18	2.6342	2.6342	GTEx&tcga_normals:14/3694=0.38%,GTEx:0.30%,GTEx_FI:{Heart=[count:3=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Adrenal_Gland=[count:1=pct:1.2],Ovary=[count:1=pct:1.9],Uterus=[count:1=pct:2.3],Muscle=[count:1=pct:0.4],Blood=[count:1=pct:0.6]},GTEx_v2:{count=23;pct=0.27%;dist=Muscle_-_Skeletal=3,Heart_-_Left_Ventricle=3,Stomach=1,Artery_-_Tibial=1,Ovary=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Thyroid=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Whole_Blood=1,Esophagus_-_Muscularis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},YOSHIHARA_TCGA_num_samples[BLCA:1|LGG:1],{Klijn_CCL:Colo-Rectal=1,Breast=1},COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	HCT116_LARGE_INTESTINE	0.18	0.75	5.2684	TRUE	1	3	0	1	3	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	AC104389.28--HBE1	56	439	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	308	0	0.62	1	0.6675	5.2327	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HCT116_LARGE_INTESTINE	0.62	1	5.9002	TRUE	0	35	0	55	35	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	TIMM23B--LINC00843	81	48	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.9655	0.5721	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCT116_LARGE_INTESTINE	0.98	1	1.5376	TRUE	508	994	45	981	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	COMMD10--AP3S1	1	221	COMMD10	6085	chr5:115469875:+	AP3S1	24067	chr5:115230784:+	ONLY_REF_SPLICE	YES	172	2038	0.56	0.1	0.0119	2.6342	GTEx&tcga_normals:14/3694=0.38%,GTEx:0.30%,GTEx_FI:{Heart=[count:3=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Adrenal_Gland=[count:1=pct:1.2],Ovary=[count:1=pct:1.9],Uterus=[count:1=pct:2.3],Muscle=[count:1=pct:0.4],Blood=[count:1=pct:0.6]},GTEx_v2:{count=23;pct=0.27%;dist=Muscle_-_Skeletal=3,Heart_-_Left_Ventricle=3,Stomach=1,Artery_-_Tibial=1,Ovary=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Thyroid=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Whole_Blood=1,Esophagus_-_Muscularis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},YOSHIHARA_TCGA_num_samples[BLCA:1|LGG:1],{Klijn_CCL:Colo-Rectal=1,Breast=1},COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	HCT116_LARGE_INTESTINE	0.1	0.56	2.6461	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	TIMM23--RP11-464F9.1	52	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	626	6	0.08	0.9	0.6198	0.0596	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCT116_LARGE_INTESTINE	0.08	0.9	0.6794	TRUE	519	3926	326	965	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	PANK2--MAVS	48	15	PANK2	1890	chr20:3870375:+	MAVS	18503	chr20:3835205:+	ONLY_REF_SPLICE	YES	10	0	0.86	1	0.5721	0.1788	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[20206],PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2,MAVS->chr20:3827487-3849280:+,mitochondrial_antiviral_signaling_protein	HCT116_LARGE_INTESTINE	0.86	1	0.7509	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	COMMD10--AP3S1	4	112	COMMD10	4974	chr5:115428397:+	AP3S1	26284	chr5:115238582:+	ONLY_REF_SPLICE	YES	144	1896	0.45	0.06	0.0477	1.335	GTEx&tcga_normals:14/3694=0.38%,GTEx:0.30%,GTEx_FI:{Heart=[count:3=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Adrenal_Gland=[count:1=pct:1.2],Ovary=[count:1=pct:1.9],Uterus=[count:1=pct:2.3],Muscle=[count:1=pct:0.4],Blood=[count:1=pct:0.6]},GTEx_v2:{count=23;pct=0.27%;dist=Muscle_-_Skeletal=3,Heart_-_Left_Ventricle=3,Stomach=1,Artery_-_Tibial=1,Ovary=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Thyroid=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Whole_Blood=1,Esophagus_-_Muscularis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},YOSHIHARA_TCGA_num_samples[BLCA:1|LGG:1],{Klijn_CCL:Colo-Rectal=1,Breast=1},COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	HCT116_LARGE_INTESTINE	0.06	0.45	1.3827	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	26	3	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	9	1	0.76	0.97	0.3099	0.0358	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.76	0.97	0.3457	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	25	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	9	1	0.75	0.96	0.298	0.0238	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.75	0.96	0.3218	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	TCF7L2--RP11-57H14.3	20	21	TCF7L2	4529	chr10:114799885:+	RP11-57H14.3	23331	chr10:114648494:+	ONLY_REF_SPLICE	YES	311	0	0.12	1	0.2384	0.2503	LOCAL_REARRANGEMENT:+:[44139],TCF7L2->Oncogene{Bushman},chr10:114710009-114927437:+,transcription_factor_7_like_2,RP11-57H14.3->chr10:114648494-114665870:+	HCT116_LARGE_INTESTINE	0.12	1	0.4887	TRUE	0	2	0	1	2	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	C15orf57--CBX3	14	25	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	74	39	0.35	0.5	0.1669	0.298	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCT116_LARGE_INTESTINE	0.35	0.5	0.4649	TRUE	267	562	48	632	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	14	18	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	16	11	0.67	0.74	0.1669	0.2146	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.67	0.74	0.3815	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	SPAG9--MBTD1	16	9	SPAG9	1512	chr17:49197715:-	MBTD1	59068	chr17:49279057:-	ONLY_REF_SPLICE	YES	79	61	0.24	0.29	0.1907	0.1073	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[56560],SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	HCT116_LARGE_INTESTINE	0.24	0.29	0.298	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	17	4	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	13	1	0.62	0.95	0.2026	0.0477	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.62	0.95	0.2503	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-ND6--MT-TE	18	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2146	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCT116_LARGE_INTESTINE	1	1	0.2146	FALSE	499	1288	110	792	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	LINC00511--SLC39A11	13	18	LINC00511	8867	chr17:70588342:-	SLC39A11	52513	chr17:70645407:-	ONLY_REF_SPLICE	YES	84	107	0.27	0.22	0.155	0.2146	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	HCT116_LARGE_INTESTINE	0.22	0.27	0.3696	TRUE	0	1	0	5	1	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	13	18	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	16	8	0.66	0.79	0.155	0.2146	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.66	0.79	0.3696	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-ND6--MT-TE	17	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2026	0.0119	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCT116_LARGE_INTESTINE	1	1	0.2145	FALSE	499	1288	110	792	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	AC104389.28--HBE1	15	2	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	160	1	0.1	0.94	0.1788	0.0238	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HCT116_LARGE_INTESTINE	0.1	0.94	0.2026	TRUE	0	16	0	53	13	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-TA--MT-TC	14	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1669	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCT116_LARGE_INTESTINE	1	1	0.1669	FALSE	462	80	0	856	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	12	7	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	5	9	0.79	0.68	0.143	0.0834	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.68	0.79	0.2264	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	C15orf57--CBX3	9	17	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	73	41	0.26	0.39	0.1073	0.2026	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCT116_LARGE_INTESTINE	0.26	0.39	0.3099	TRUE	267	562	48	632	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	10	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	2	0.88	0.92	0.1192	0.155	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCT116_LARGE_INTESTINE	0.88	0.92	0.2742	FALSE	515	4851	409	746	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	11	8	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	5	8	0.79	0.7	0.1311	0.0954	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.7	0.79	0.2265	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	12	2	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	13	1	0.52	0.93	0.143	0.0238	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.52	0.93	0.1668	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	PANK2--MAVS	7	22	PANK2	3062	chr20:3872058:+	MAVS	18503	chr20:3835205:+	ONLY_REF_SPLICE	YES	25	0	0.54	1	0.0834	0.2622	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[20206],PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2,MAVS->chr20:3827487-3849280:+,mitochondrial_antiviral_signaling_protein	HCT116_LARGE_INTESTINE	0.54	1	0.3456	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	MT-TA--MT-TC	12	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.143	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCT116_LARGE_INTESTINE	1	1	0.143	FALSE	462	80	0	856	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	RP11-680G10.1--GSE1	10	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	31	1	0.37	0.1192	0.0954	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCT116_LARGE_INTESTINE	0.37	1	0.2146	TRUE	465	1949	224	605	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	11	3	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	5	2	0.74	0.88	0.1311	0.0358	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.74	0.88	0.1669	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	5	19	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.89	1	0.0596	0.2265	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCT116_LARGE_INTESTINE	0.89	1	0.2861	FALSE	407	2205	196	549	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	17	MT-CO3	1138	chrM:9344:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	9	14	0.71	0.61	0.0596	0.2026	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.61	0.71	0.2622	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	17	MT-CO3	1149	chrM:9355:+	MT-ATP6	5180	chrM:8922:+	INCL_NON_REF_SPLICE	YES	9	71	0.71	0.24	0.0596	0.2026	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.24	0.71	0.2622	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	7	8	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	5	8	0.75	0.65	0.0834	0.0954	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.65	0.75	0.1788	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	7	8	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	5	13	0.75	0.54	0.0834	0.0954	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.54	0.75	0.1788	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	TCF7L2--RP11-57H14.3	3	24	TCF7L2	5673	chr10:114849299:+	RP11-57H14.3	23331	chr10:114648494:+	ONLY_REF_SPLICE	YES	318	0	0.08	1	0.0358	0.2861	LOCAL_REARRANGEMENT:+:[44139],TCF7L2->Oncogene{Bushman},chr10:114710009-114927437:+,transcription_factor_7_like_2,RP11-57H14.3->chr10:114648494-114665870:+	HCT116_LARGE_INTESTINE	0.08	1	0.3219	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	14	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	9	11	0.68	0.63	0.0596	0.1669	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.63	0.68	0.2265	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	17	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	9	58	0.7	0.27	0.0477	0.2026	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.27	0.7	0.2503	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	7	4	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	5	2	0.69	0.85	0.0834	0.0477	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.69	0.85	0.1311	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	7	4	MT-CO3	1173	chrM:9379:+	MT-ATP6	5450	chrM:9192:+	INCL_NON_REF_SPLICE	YES	13	1	0.46	0.92	0.0834	0.0477	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.46	0.92	0.1311	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	AC104389.28--HBE1	7	2	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	160	0	0.05	1	0.0834	0.0238	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HCT116_LARGE_INTESTINE	0.05	1	0.1072	TRUE	0	11	0	26	8	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	18	MT-CO3	1220	chrM:9426:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	12	11	0.64	0.66	0.0358	0.2146	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.64	0.66	0.2504	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	10	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	6	5	0.71	0.75	0.0596	0.1192	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.71	0.75	0.1788	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	7	2	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	16	1	0.36	0.9	0.0834	0.0238	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.36	0.9	0.1072	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	17	MT-CO3	1153	chrM:9359:+	MT-ATP6	5072	chrM:8814:+	INCL_NON_REF_SPLICE	YES	10	29	0.67	0.41	0.0358	0.2026	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.41	0.67	0.2384	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	6	4	MT-CO3	1047	chrM:9253:+	MT-ATP6	5189	chrM:8931:+	INCL_NON_REF_SPLICE	YES	3	79	0.77	0.11	0.0715	0.0477	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.11	0.77	0.1192	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	20	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.0238	0.2384	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCT116_LARGE_INTESTINE	0.96	1	0.2622	FALSE	192	492	57	212	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	LINC00511--SLC39A11	2	18	LINC00511	8867	chr17:70588342:-	SLC39A11	51270	chr17:70709120:-	ONLY_REF_SPLICE	YES	84	115	0.19	0.15	0.0238	0.2146	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	HCT116_LARGE_INTESTINE	0.15	0.19	0.2384	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	6	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	1	1	0.0715	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	4	MT-CO3	1038	chrM:9244:+	MT-ATP6	5225	chrM:8967:+	INCL_NON_REF_SPLICE	YES	3	15	0.75	0.38	0.0596	0.0477	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.38	0.75	0.1073	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	3	MT-CO3	1393	chrM:9599:+	MT-ATP6	5454	chrM:9196:+	INCL_NON_REF_SPLICE	YES	3	1	0.73	0.89	0.0596	0.0358	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.73	0.89	0.0954	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	TCF7L2--RP11-57H14.3	3	11	TCF7L2	4529	chr10:114799885:+	RP11-57H14.3	25511	chr10:114665736:+	ONLY_REF_SPLICE	YES	311	4	0.04	0.78	0.0358	0.1311	LOCAL_REARRANGEMENT:+:[44139],TCF7L2->Oncogene{Bushman},chr10:114710009-114927437:+,transcription_factor_7_like_2,RP11-57H14.3->chr10:114648494-114665870:+	HCT116_LARGE_INTESTINE	0.04	0.78	0.1669	TRUE	0	1	0	1	1	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	6	MT-CO3	1061	chrM:9267:+	MT-ATP6	5343	chrM:9085:+	INCL_NON_REF_SPLICE	YES	5	4	0.67	0.71	0.0477	0.0715	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.67	0.71	0.1192	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	5	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	9	2	0.5	0.82	0.0477	0.0596	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.5	0.82	0.1073	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	8	MT-CO3	1083	chrM:9289:+	MT-ATP6	5312	chrM:9054:+	INCL_NON_REF_SPLICE	YES	5	9	0.69	0.55	0.0358	0.0954	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.55	0.69	0.1312	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-ND6--MT-TE	5	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0596	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCT116_LARGE_INTESTINE	1	1	0.0596	FALSE	499	1288	110	792	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	RP11-120D5.1--MID1	5	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0596	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCT116_LARGE_INTESTINE	1	1	0.0596	FALSE	16	356	14	466	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	7	MT-CO3	1099	chrM:9305:+	MT-ATP6	5328	chrM:9070:+	INCL_NON_REF_SPLICE	YES	5	8	0.67	0.56	0.0358	0.0834	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.56	0.67	0.1192	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	2	MT-CO3	1192	chrM:9398:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	16	1	0.27	0.86	0.0477	0.0238	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.27	0.86	0.0715	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	2	MT-CO3	1396	chrM:9602:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	3	1	0.67	0.86	0.0477	0.0238	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.67	0.86	0.0715	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	2	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	10	1	0.38	0.0477	0.0238	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.38	1	0.0715	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	14	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.94	0.88	0.0119	0.1669	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCT116_LARGE_INTESTINE	0.88	0.94	0.1788	FALSE	467	2173	244	435	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	SPAG9--MBTD1	4	2	SPAG9	1512	chr17:49197715:-	MBTD1	61815	chr17:49270377:-	ONLY_REF_SPLICE	YES	79	63	0.07	0.09	0.0477	0.0238	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[56560],SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	HCT116_LARGE_INTESTINE	0.07	0.09	0.0715	TRUE	0	0	0	1	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	AC104389.28--HBE1	4	1	AC104389.28	1093	chr11:5526790:-	HBE1	13750	chr11:5291386:-	INCL_NON_REF_SPLICE	YES	6	1	0.45	0.83	0.0477	0.0119	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HCT116_LARGE_INTESTINE	0.45	0.83	0.0596	TRUE	0	16	0	53	13	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	GNPTAB--CCDC53	4	1	GNPTAB	1380	chr12:102224337:-	CCDC53	35642	chr12:102439897:-	ONLY_REF_SPLICE	YES	88	55	0.05	0.08	0.0477	0.0119	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Esophagus_-_Muscularis=1},{Klijn_CCL:Colo-Rectal=1},GNPTAB->N-acetylglucosamine-1-phosphate_transferase_alpha_and_beta_subunits,chr12:102139275-102224716:-,CCDC53->chr12:102406705-102455927:-,coiled-coil_domain_containing_53	HCT116_LARGE_INTESTINE	0.05	0.08	0.0596	TRUE	0	0	0	1	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-ND5--MT-TH	4	1	MT-ND5	1141	chrM:12477:+	MT-TH	5808	chrM:12133:+	INCL_NON_REF_SPLICE	YES	25	0	0.17	1	0.0477	0.0119	LOCAL_REARRANGEMENT:+:[131],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-TH->chrM:12138-12206:+,mitochondrially_encoded_tRNA_histidine	HCT116_LARGE_INTESTINE	0.17	1	0.0596	FALSE	0	0	0	1	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-ND6--MT-TE	4	1	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0477	0.0119	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCT116_LARGE_INTESTINE	0.83	1	0.0596	FALSE	499	1288	110	792	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	TCF7L2--RP11-57H14.3	1	13	TCF7L2	5673	chr10:114849299:+	RP11-57H14.3	25511	chr10:114665736:+	ONLY_REF_SPLICE	YES	318	4	0.04	0.78	0.0119	0.155	LOCAL_REARRANGEMENT:+:[44139],TCF7L2->Oncogene{Bushman},chr10:114710009-114927437:+,transcription_factor_7_like_2,RP11-57H14.3->chr10:114648494-114665870:+	HCT116_LARGE_INTESTINE	0.04	0.78	0.1669	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	0	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	1	1	0.0477	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	3	MT-CO3	1181	chrM:9387:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	13	1	0.32	0.86	0.0358	0.0358	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	0.32	0.86	0.0716	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	PANK2--MAVS	3	1	PANK2	1890	chr20:3870375:+	MAVS	20862	chr20:3841979:+	ONLY_REF_SPLICE	YES	10	189	0.29	0.02	0.0358	0.0119	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[20206],PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2,MAVS->chr20:3827487-3849280:+,mitochondrial_antiviral_signaling_protein	HCT116_LARGE_INTESTINE	0.02	0.29	0.0477	TRUE	0	0	0	1	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	SPAG9--MBTD1	2	5	SPAG9	1512	chr17:49197715:-	MBTD1	60173	chr17:49272722:-	ONLY_REF_SPLICE	NO	79	51	0.08	0.12	0.0238	0.0596	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[56560],SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	HCT116_LARGE_INTESTINE	0.08	0.12	0.0834	TRUE	0	0	0	1	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	SPAG9--MBTD1	1	9	SPAG9	1512	chr17:49197715:-	MBTD1	58687	chr17:49279438:-	ONLY_REF_SPLICE	YES	79	80	0.11	0.11	0.0119	0.1073	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[56560],SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	HCT116_LARGE_INTESTINE	0.11	0.11	0.1192	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	VTI1A--RP11-57H14.3	3	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	287	0	0.01	1	0.0358	0.0119	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HCT116_LARGE_INTESTINE	0.01	1	0.0477	FALSE	272	151	14	158	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	FLYWCH1P1--TONSL	3	0	FLYWCH1P1	2065	chr3:180546574:-	TONSL	13012	chr8:145662034:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	FLYWCH1P1->FLYWCH-type_zinc_finger_1_pseudogene_1,chr3:180545765-180547638:-,TONSL->chr8:145654165-145669827:-,tonsoku-like,_DNA_repair_protein	HCT116_LARGE_INTESTINE	1	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT116_LARGE_INTESTINE	1	1	0.0358	FALSE	189	492	56	216	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	3	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCT116_LARGE_INTESTINE	1	1	0.0358	FALSE	81	155	12	160	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	UBAP2--DCAF12	2	2	UBAP2	4381	chr9:33998785:-	DCAF12	42120	chr9:34098515:-	ONLY_REF_SPLICE	YES	176	234	0.02	0.02	0.0238	0.0238	GTEx_v2:{count=2;pct=0.02%;dist=Breast_-_Mammary_Tissue=1,Testis=1},LOCAL_REARRANGEMENT:-:[37438],UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,DCAF12->DDB1_and_CUL4_associated_factor_12,chr9:34086385-34127397:-	HCT116_LARGE_INTESTINE	0.02	0.02	0.0476	TRUE	0	0	0	1	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	ANXA2--NARG2	2	0	ANXA2	17854	chr15:60656628:-	NARG2	44691	chr15:60742040:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	HCT116_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	ATG4D--EEF2	2	0	ATG4D	1431	chr19:10655001:+	EEF2	11424	chr19:3984348:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	ATG4D->autophagy_related_4D_cysteine_peptidase,chr19:10654571-10664094:+,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	HCT116_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	KIF22--NSMAF	2	0	KIF22	6675	chr16:29811369:+	NSMAF	29201	chr8:59512580:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	KIF22->chr16:29802040-29816706:+,kinesin_family_member_22,NSMAF->chr8:59496063-59572403:-,neutral_sphingomyelinase_activation_associated_factor	HCT116_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	MYO1C--CDK2AP1	2	0	MYO1C	2213	chr17:1394894:-	CDK2AP1	31015	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	MYO1C->chr17:1367392-1396106:-,myosin_IC,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	HCT116_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	PANK2--MAVS	2	0	PANK2	1066	chr20:3869551:+	MAVS	18503	chr20:3835205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[20206],PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2,MAVS->chr20:3827487-3849280:+,mitochondrial_antiviral_signaling_protein	HCT116_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	2	0	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCT116_LARGE_INTESTINE	1	1	0.0238	FALSE	5	9	0	20	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	RPL5--GNB1	2	0	RPL5	1093	chr1:93297674:+	GNB1	13719	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	HCT116_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HCT116_LARGE_INTESTINE	1	1	0.0238	FALSE	28	14	1	23	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	FAM172A--NR2F1-AS1	1	2	FAM172A	4518	chr5:93386436:-	NR2F1-AS1	39228	chr5:92747215:-	ONLY_REF_SPLICE	YES	64	75	0.04	0.04	0.0119	0.0238	NEIGHBORS[32421],FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-	HCT116_LARGE_INTESTINE	0.04	0.04	0.0357	FALSE	0	1	1	1	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	LHFPL2--ARSB	1	2	LHFPL2	7033	chr5:77928087:-	ARSB	32229	chr5:78135249:-	ONLY_REF_SPLICE	YES	40	27	0.07	0.1	0.0119	0.0238	LOCAL_REARRANGEMENT:-:[7188],LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,ARSB->arylsulfatase_B,chr5:78073032-78281910:-	HCT116_LARGE_INTESTINE	0.07	0.1	0.0357	TRUE	0	0	0	1	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	SPAG9--MBTD1	1	2	SPAG9	1512	chr17:49197715:-	MBTD1	61321	chr17:49270871:-	ONLY_REF_SPLICE	YES	79	73	0.04	0.04	0.0119	0.0238	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[56560],SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	HCT116_LARGE_INTESTINE	0.04	0.04	0.0357	TRUE	0	0	0	1	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	DCBLD2--SFR1	1	1	DCBLD2	6582	chr3:98568305:-	SFR1	30736	chr10:105882723:+	ONLY_REF_SPLICE	NO	1780	37	0	0.05	0.0119	0.0119	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,SFR1->SWI5_dependent_homologous_recombination_repair_protein_1,chr10:105881816-105886143:+	HCT116_LARGE_INTESTINE	0	0.05	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	FRMD5--CASC4	1	1	FRMD5	1300	chr15:44487151:-	CASC4	28178	chr15:44615163:+	ONLY_REF_SPLICE	YES	14	139	0.12	0.01	0.0119	0.0119	LOCAL_INVERSION:-:+:[93477],FRMD5->FERM_domain_containing_5,chr15:44162962-44487450:-,CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+	HCT116_LARGE_INTESTINE	0.01	0.12	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	LRBA--SH3D19	1	1	LRBA	2301	chr4:151935579:-	SH3D19	88953	chr4:152070713:-	ONLY_REF_SPLICE	NO	123	80	0.02	0.02	0.0119	0.0119	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},YOSHIHARA_TCGA_num_samples[BLCA:1|HNSC:1|LUSC:1],{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[87024],LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,SH3D19->SH3_domain_containing_19,chr4:152023903-152246784:-	HCT116_LARGE_INTESTINE	0.02	0.02	0.0238	TRUE	0	2	0	1	2	TRUE	ACH-000971
HCT116_LARGE_INTESTINE	NFAT5--CYB5B	1	1	NFAT5	2281	chr16:69600277:+	CYB5B	35547	chr16:69481053:+	ONLY_REF_SPLICE	YES	21	2945	0.09	0	0.0119	0.0119	LOCAL_REARRANGEMENT:+:[98828],NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	HCT116_LARGE_INTESTINE	0	0.09	0.0238	FALSE	0	3	0	2	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	NOC4L--ANKLE2	1	1	NOC4L	2218	chr12:132630210:+	ANKLE2	17841	chr12:133331719:-	ONLY_REF_SPLICE	YES	245	37	0.01	0.05	0.0119	0.0119	NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	HCT116_LARGE_INTESTINE	0.01	0.05	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	PANK2--MAVS	1	1	PANK2	3062	chr20:3872058:+	MAVS	21784	chr20:3842901:+	ONLY_REF_SPLICE	NO	25	183	0.07	0.01	0.0119	0.0119	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[20206],PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2,MAVS->chr20:3827487-3849280:+,mitochondrial_antiviral_signaling_protein	HCT116_LARGE_INTESTINE	0.01	0.07	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	7093	chr12:76024947:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	NO	0	3	1	0.4	0.0119	0.0119	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCT116_LARGE_INTESTINE	0.4	1	0.0238	FALSE	0	0	0	3	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	RPLP2--XRN2	1	1	RPLP2	2999	chr11:811645:+	XRN2	15816	chr20:21319682:+	ONLY_REF_SPLICE	YES	3526	517	0	0	0.0119	0.0119	RPLP2->chr11:809647-812880:+,ribosomal_protein_lateral_stalk_subunit_P2,XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+	HCT116_LARGE_INTESTINE	0	0	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000971
HCT116_LARGE_INTESTINE	UBAP1--UBE2R2	1	1	UBAP1	1236	chr9:34179238:+	UBE2R2	16187	chr9:33886879:+	ONLY_REF_SPLICE	NO	109	171	0.02	0.01	0.0119	0.0119	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Muscle=[count:6=pct:2.6],Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4]},GTEx_v2:{count=2;pct=0.02%;dist=Vagina=1,Muscle_-_Skeletal=1},UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	HCT116_LARGE_INTESTINE	0.01	0.02	0.0238	FALSE	8	5	0	9	0	FALSE	ACH-000971
KE39_STOMACH	FKBP2--DNAJC4	316	284	FKBP2	3309	chr11:64010783:+	DNAJC4	10747	chr11:64001366:+	ONLY_REF_SPLICE	YES	477	122	0.56	0.83	3.3368	2.9989	LOCAL_REARRANGEMENT:+:[6717],FKBP2->FK506_binding_protein_2,chr11:64008475-64011604:+,DNAJC4->DnaJ_heat_shock_protein_family_(Hsp40)_member_C4,chr11:63997750-64001758:+	KE39_STOMACH	0.56	0.83	6.3357	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ARPC1A--MYH16	224	246	ARPC1A	2200	chr7:98931040:+	MYH16	62672	chr7:98904232:+	ONLY_REF_SPLICE	YES	947	0	0.33	1	2.3654	2.5977	LOCAL_REARRANGEMENT:+:[14768],ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	KE39_STOMACH	0.33	1	4.9631	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	SOX5--LYRM5	182	132	SOX5	6193	chr12:24048832:-	LYRM5	36044	chr12:25356854:+	ONLY_REF_SPLICE	YES	53	178	0.86	0.64	1.9219	1.3939	SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-,LYRM5->LYR_motif_containing_5,chr12:25348150-25362579:+	KE39_STOMACH	0.64	0.86	3.3158	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	CD47--IFT57	172	82	CD47	15528	chr3:107765985:-	IFT57	29517	chr3:107886711:-	INCL_NON_REF_SPLICE	YES	70	133	0.78	0.66	1.8163	0.8659	LOCAL_REARRANGEMENT:-:[69787],CD47->CD47_molecule,chr3:107762145-107809872:-,IFT57->chr3:107879659-107941417:-,intraflagellar_transport_57	KE39_STOMACH	0.66	0.78	2.6822	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	RNF10--SIRT4	150	100	RNF10	6561	chr12:120990501:+	SIRT4	25895	chr12:120741364:+	ONLY_REF_SPLICE	YES	260	0	0.49	1	1.5839	1.056	RNF10->chr12:120971283-121015397:+,ring_finger_protein_10,SIRT4->chr12:120740119-120751052:+,sirtuin_4	KE39_STOMACH	0.49	1	2.6399	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	RP11-444D3.1--SOX5	106	52	RP11-444D3.1	1258	chr12:24715267:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	30	30	0.84	0.84	1.1193	0.5491	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KE39_STOMACH	0.84	0.84	1.6684	TRUE	0	1	1	7	0	FALSE	ACH-000507
KE39_STOMACH	C4orf19--USO1	108	3	C4orf19	1100	chr4:37455662:+	USO1	25654	chr4:76720775:+	ONLY_REF_SPLICE	YES	1	184	0.99	0.38	1.1404	0.0317	C4orf19->chr4:37455563-37625117:+,chromosome_4_open_reading_frame_19,USO1->USO1_vesicle_transport_factor,chr4:76649777-76735382:+	KE39_STOMACH	0.38	0.99	1.1721	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	SUMO2--FAM222B	90	58	SUMO2	1170	chr17:73178909:-	FAM222B	18513	chr17:27086894:-	ONLY_REF_SPLICE	YES	722	23	0.17	0.87	0.9504	0.6125	SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2,FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B	KE39_STOMACH	0.17	0.87	1.5629	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	SOX5--LYRM5	59	165	SOX5	6298	chr12:24048727:-	LYRM5	36044	chr12:25356854:+	ONLY_REF_SPLICE	YES	63	178	0.78	0.56	0.623	1.7423	SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-,LYRM5->LYR_motif_containing_5,chr12:25348150-25362579:+	KE39_STOMACH	0.56	0.78	2.3653	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	FKBP2--DNAJC4	14	286	FKBP2	3495	chr11:64010969:+	DNAJC4	10747	chr11:64001366:+	ONLY_REF_SPLICE	YES	434	122	0.41	0.71	0.1478	3.0201	LOCAL_REARRANGEMENT:+:[6717],FKBP2->FK506_binding_protein_2,chr11:64008475-64011604:+,DNAJC4->DnaJ_heat_shock_protein_family_(Hsp40)_member_C4,chr11:63997750-64001758:+	KE39_STOMACH	0.41	0.71	3.1679	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	CNN2--ILF3	81	17	CNN2	6052	chr19:1036561:+	ILF3	15047	chr19:10781192:+	ONLY_REF_SPLICE	YES	275	486	0.26	0.17	0.8553	0.1795	CNN2->calponin_2,chr19:1026298-1039068:+,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	KE39_STOMACH	0.17	0.26	1.0348	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	RHBDF2--TEX2	71	40	RHBDF2	6284	chr17:74477457:-	TEX2	33939	chr17:62238293:-	ONLY_REF_SPLICE	YES	143	32	0.44	0.78	0.7497	0.4224	RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila),TEX2->chr17:62224587-62340661:-,testis_expressed_2	KE39_STOMACH	0.44	0.78	1.1721	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	RP11-444D3.1--SOX5	57	83	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	30	1	0.82	0.6019	0.8765	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KE39_STOMACH	0.82	1	1.4784	TRUE	477	1352	189	275	0	FALSE	ACH-000507
KE39_STOMACH	TIMM23B--LINC00843	70	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7392	0.3062	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KE39_STOMACH	1	1	1.0454	TRUE	508	994	45	981	0	FALSE	ACH-000507
KE39_STOMACH	NKD1--TBC1D1	66	43	NKD1	2226	chr16:50583466:+	TBC1D1	45645	chr4:38117331:+	ONLY_REF_SPLICE	YES	1827	216	0.06	0.34	0.6969	0.4541	NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,TBC1D1->TBC1_domain_family_member_1,chr4:37892708-38140796:+	KE39_STOMACH	0.06	0.34	1.151	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	SUMO2--FAM222B	67	35	SUMO2	1170	chr17:73178909:-	FAM222B	18625	chr17:27086782:-	ONLY_REF_SPLICE	YES	722	22	0.12	0.82	0.7075	0.3696	SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2,FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B	KE39_STOMACH	0.12	0.82	1.0771	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MT-TA--MT-TC	70	16	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7392	0.169	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KE39_STOMACH	1	1	0.9082	FALSE	462	80	0	856	0	FALSE	ACH-000507
KE39_STOMACH	ARPC1A--MYH16	5	248	ARPC1A	3232	chr7:98933107:+	MYH16	62672	chr7:98904232:+	ONLY_REF_SPLICE	YES	989	0	0.2	1	0.0528	2.6188	LOCAL_REARRANGEMENT:+:[14768],ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	KE39_STOMACH	0.2	1	2.6716	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	KRAS--SOX5	50	46	KRAS	2308	chr12:25398208:-	SOX5	23601	chr12:23999127:-	ONLY_REF_SPLICE	YES	2101	65	0.04	0.6	0.528	0.4857	KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KE39_STOMACH	0.04	0.6	1.0137	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	CD47--IFT57	27	99	CD47	17375	chr3:107764138:-	IFT57	29517	chr3:107886711:-	INCL_NON_REF_SPLICE	YES	39	133	0.76	0.49	0.2851	1.0454	LOCAL_REARRANGEMENT:-:[69787],CD47->CD47_molecule,chr3:107762145-107809872:-,IFT57->chr3:107879659-107941417:-,intraflagellar_transport_57	KE39_STOMACH	0.49	0.76	1.3305	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ACSS1--BCAT1	34	48	ACSS1	14808	chr20:24994172:-	BCAT1	33398	chr12:25002883:-	ONLY_REF_SPLICE	YES	807	2	0.09	0.98	0.359	0.5069	ACSS1->acyl-CoA_synthetase_short-chain_family_member_1,chr20:24986868-25039616:-,BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-	KE39_STOMACH	0.09	0.98	0.8659	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	RP11-444D3.1--SOX5	34	44	RP11-444D3.1	1253	chr12:24715272:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	30	30	0.72	0.72	0.359	0.4646	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KE39_STOMACH	0.72	0.72	0.8236	TRUE	0	1	1	7	0	FALSE	ACH-000507
KE39_STOMACH	TGFB1--RBPMS	34	27	TGFB1	5866	chr19:41847788:-	RBPMS	26452	chr8:30361803:+	ONLY_REF_SPLICE	YES	86	45	0.41	0.58	0.359	0.2851	TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1,RBPMS->RNA_binding_protein_with_multiple_splicing,chr8:30241944-30429778:+	KE39_STOMACH	0.41	0.58	0.6441	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	SOX5--LYRM5	2	133	SOX5	6193	chr12:24048832:-	LYRM5	35849	chr12:25356659:+	ONLY_REF_SPLICE	YES	53	161	0.72	0.46	0.0211	1.4044	SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-,LYRM5->LYR_motif_containing_5,chr12:25348150-25362579:+	KE39_STOMACH	0.46	0.72	1.4255	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	CCND1--PTMA	35	0	CCND1	5984	chr11:69466002:+	PTMA	17242	chr2:232576651:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3696	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KE39_STOMACH	1	1	0.3696	TRUE	0	0	0	2	0	TRUE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	34	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	17115	7	0	0.84	0.359	0.0211	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.84	0.3801	FALSE	230	193	14	283	0	FALSE	ACH-000507
KE39_STOMACH	METTL3--SALL2	9	101	METTL3	6292	chr14:21972016:-	SALL2	19324	chr14:21991710:-	INCL_NON_REF_SPLICE	NO	327	0	0.25	1	0.095	1.0665	LOCAL_REARRANGEMENT:-:[9715],METTL3->chr14:21966277-21979517:-,methyltransferase_like_3,SALL2->chr14:21989232-22005350:-,spalt-like_transcription_factor_2	KE39_STOMACH	0.25	1	1.1615	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	SOX5--LYRM5	3	124	SOX5	6298	chr12:24048727:-	LYRM5	36215	chr12:25357025:+	ONLY_REF_SPLICE	YES	63	1552	0.67	0.08	0.0317	1.3094	SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-,LYRM5->LYR_motif_containing_5,chr12:25348150-25362579:+	KE39_STOMACH	0.08	0.67	1.3411	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ND4L	6	110	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	32	3	0.78	0.97	0.0634	1.1616	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KE39_STOMACH	0.78	0.97	1.225	FALSE	344	826	44	306	0	FALSE	ACH-000507
KE39_STOMACH	FKBP2--DNAJC4	4	113	FKBP2	2556	chr11:64010030:+	DNAJC4	10747	chr11:64001366:+	ONLY_REF_SPLICE	YES	753	122	0.13	0.49	0.0422	1.1932	LOCAL_REARRANGEMENT:+:[6717],FKBP2->FK506_binding_protein_2,chr11:64008475-64011604:+,DNAJC4->DnaJ_heat_shock_protein_family_(Hsp40)_member_C4,chr11:63997750-64001758:+	KE39_STOMACH	0.13	0.49	1.2354	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ND4L	3	116	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	1804	3	0.06	0.98	0.0317	1.2249	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KE39_STOMACH	0.06	0.98	1.2566	FALSE	344	827	44	306	0	FALSE	ACH-000507
KE39_STOMACH	ACSS1--BCAT1	24	31	ACSS1	14383	chr20:24994597:-	BCAT1	33398	chr12:25002883:-	ONLY_REF_SPLICE	YES	911	2	0.06	0.96	0.2534	0.3273	ACSS1->acyl-CoA_synthetase_short-chain_family_member_1,chr20:24986868-25039616:-,BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-	KE39_STOMACH	0.06	0.96	0.5807	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ND4L	3	115	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	97	1	0.55	0.99	0.0317	1.2144	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KE39_STOMACH	0.55	0.99	1.2461	FALSE	344	826	44	306	0	FALSE	ACH-000507
KE39_STOMACH	TIMM23--RP11-464F9.1	31	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	97	6	0.25	0.85	0.3273	0.0211	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KE39_STOMACH	0.25	0.85	0.3484	TRUE	519	3926	326	965	0	FALSE	ACH-000507
KE39_STOMACH	RP11-444D3.1--SOX5	9	79	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	1	30	0.99	0.75	0.095	0.8342	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KE39_STOMACH	0.75	0.99	0.9292	TRUE	274	363	69	150	0	FALSE	ACH-000507
KE39_STOMACH	SOX5--LYRM5	1	102	SOX5	6193	chr12:24048832:-	LYRM5	36215	chr12:25357025:+	ONLY_REF_SPLICE	NO	53	1552	0.66	0.06	0.0106	1.0771	SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-,LYRM5->LYR_motif_containing_5,chr12:25348150-25362579:+	KE39_STOMACH	0.06	0.66	1.0877	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ND4L	5	83	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	36	1	0.71	0.99	0.0528	0.8765	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KE39_STOMACH	0.71	0.99	0.9293	FALSE	344	826	44	306	0	FALSE	ACH-000507
KE39_STOMACH	RP11-444D3.1--SOX5	4	85	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	40	1	0.69	0.0422	0.8976	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KE39_STOMACH	0.69	1	0.9398	TRUE	160	277	29	98	0	FALSE	ACH-000507
KE39_STOMACH	NTMT1--RP11-492E3.2	21	15	NTMT1	1295	chr9:132371457:+	RP11-492E3.2	12335	chr9:132342330:+	ONLY_REF_SPLICE	YES	179	3	0.17	0.92	0.2218	0.1584	LOCAL_REARRANGEMENT:+:[24328],NTMT1->N-terminal_Xaa-Pro-Lys_N-methyltransferase_1,chr9:132371163-132398209:+,RP11-492E3.2->chr9:132337688-132346835:+	KE39_STOMACH	0.17	0.92	0.3802	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	CD47--IFT57	4	82	CD47	15530	chr3:107765983:-	IFT57	29514	chr3:107886714:-	INCL_NON_REF_SPLICE	YES	72	136	0.54	0.39	0.0422	0.8659	LOCAL_REARRANGEMENT:-:[69787],CD47->CD47_molecule,chr3:107762145-107809872:-,IFT57->chr3:107879659-107941417:-,intraflagellar_transport_57	KE39_STOMACH	0.39	0.54	0.9081	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	C15orf57--CBX3	19	18	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	49	36	0.43	0.51	0.2006	0.1901	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KE39_STOMACH	0.43	0.51	0.3907	TRUE	267	562	48	632	0	FALSE	ACH-000507
KE39_STOMACH	RP11-444D3.1--SOX5	4	77	RP11-444D3.1	8520	chr12:24430161:-	SOX5	17760	chr12:24048958:-	INCL_NON_REF_SPLICE	YES	1	30	0.99	0.73	0.0422	0.8131	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KE39_STOMACH	0.73	0.99	0.8553	TRUE	274	363	69	150	0	FALSE	ACH-000507
KE39_STOMACH	CCND1--PTMA	23	0	CCND1	5984	chr11:69466002:+	PTMA	17215	chr2:232576624:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2429	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KE39_STOMACH	1	1	0.2429	TRUE	0	0	0	2	0	TRUE	ACH-000507
KE39_STOMACH	SLC1A5--MT-ND4L	21	8	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2543	0	0.01	1	0.2218	0.0845	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KE39_STOMACH	0.01	1	0.3063	FALSE	0	0	0	189	0	FALSE	ACH-000507
KE39_STOMACH	NRIP1--AF127936.7	22	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.81	1	0.2323	0.0317	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KE39_STOMACH	0.81	1	0.264	FALSE	292	1546	117	613	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	22	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17279	9	0	0.73	0.2323	0.0211	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.73	0.2534	FALSE	230	198	14	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ND4L	3	78	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	282	0	0.22	1	0.0317	0.8237	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KE39_STOMACH	0.22	1	0.8554	FALSE	344	827	44	306	0	FALSE	ACH-000507
KE39_STOMACH	RNF10--SIRT4	1	78	RNF10	6561	chr12:120990501:+	SIRT4	25925	chr12:120741394:+	ONLY_REF_SPLICE	YES	260	1	0.23	0.99	0.0106	0.8237	RNF10->chr12:120971283-121015397:+,ring_finger_protein_10,SIRT4->chr12:120740119-120751052:+,sirtuin_4	KE39_STOMACH	0.23	0.99	0.8343	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	17	13	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	25651	0	0	1	0.1795	0.1373	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.3168	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	AC005152.2--VMP1	20	0	AC005152.2	5726	chr17:70116904:-	VMP1	42698	chr17:57842332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2112	0	AC005152.2->chr17:70033455-70217977:-,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KE39_STOMACH	1	1	0.2112	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	NPM1P24--SET	19	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2006	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KE39_STOMACH	1	1	0.2006	TRUE	0	0	0	434	0	FALSE	ACH-000507
KE39_STOMACH	RP11-444D3.1--SOX5	2	68	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	17	30	0.8	0.7	0.0211	0.7181	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KE39_STOMACH	0.7	0.8	0.7392	TRUE	16	11	2	20	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ND4L	12	27	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	16137	0	0	1	0.1267	0.2851	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KE39_STOMACH	0	1	0.4118	FALSE	328	800	43	304	0	FALSE	ACH-000507
KE39_STOMACH	C15orf57--CBX3	15	14	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	51	35	0.36	0.45	0.1584	0.1478	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KE39_STOMACH	0.36	0.45	0.3062	TRUE	267	562	48	632	0	FALSE	ACH-000507
KE39_STOMACH	MT-ATP6--MT-CO1	18	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	12894	35093	0	0	0.1901	0.0106	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KE39_STOMACH	0	0	0.2007	FALSE	183	104	9	328	0	FALSE	ACH-000507
KE39_STOMACH	NKD1--TBC1D1	15	13	NKD1	2226	chr16:50583466:+	TBC1D1	46890	chr4:38119654:+	ONLY_REF_SPLICE	YES	1827	196	0.02	0.12	0.1584	0.1373	NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,TBC1D1->TBC1_domain_family_member_1,chr4:37892708-38140796:+	KE39_STOMACH	0.02	0.12	0.2957	TRUE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	MSH2--EPCAM	15	9	MSH2	1434	chr2:47630541:+	EPCAM	29501	chr2:47600602:+	ONLY_REF_SPLICE	YES	278	1563	0.08	0.02	0.1584	0.095	LOCAL_REARRANGEMENT:+:[15368],MSH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47630108-47789450:+,mutS_homolog_2,EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule	KE39_STOMACH	0.02	0.08	0.2534	TRUE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ND4L	3	57	MT-ND4	1093	chrM:10852:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	22	0	0.73	1	0.0317	0.6019	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KE39_STOMACH	0.73	1	0.6336	FALSE	344	826	44	306	0	FALSE	ACH-000507
KE39_STOMACH	CCND1--PTMA	17	0	CCND1	5984	chr11:69466002:+	PTMA	17212	chr2:232576621:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1795	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KE39_STOMACH	1	1	0.1795	TRUE	0	0	0	2	0	TRUE	ACH-000507
KE39_STOMACH	SUMO2--FAM222B	2	58	SUMO2	1602	chr17:73178477:-	FAM222B	18513	chr17:27086894:-	ONLY_REF_SPLICE	YES	1071	23	0.05	0.72	0.0211	0.6125	SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2,FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B	KE39_STOMACH	0.05	0.72	0.6336	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ZNF136--KCNA7	15	2	ZNF136	1143	chr19:12274021:+	KCNA7	14465	chr19:49574135:-	ONLY_REF_SPLICE	YES	11	0	0.61	1	0.1584	0.0211	ZNF136->chr19:12273879-12300064:+,zinc_finger_protein_136,KCNA7->chr19:49570675-49576198:-,potassium_voltage-gated_channel_subfamily_A_member_7	KE39_STOMACH	0.61	1	0.1795	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	CCND1--PTMA	15	1	CCND1	5980	chr11:69465998:+	PTMA	16659	chr2:232576068:+	INCL_NON_REF_SPLICE	NO	781	7886	0.02	0	0.1584	0.0106	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KE39_STOMACH	0	0.02	0.169	FALSE	0	0	0	2	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	14	5	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	20358	9	0	0.68	0.1478	0.0528	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.68	0.2006	FALSE	231	205	14	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	11	15	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22698	89	0	0.23	0.1162	0.1584	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.23	0.2746	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	EXT2--RP11-113D6.10	13	6	EXT2	12956	chr11:44151688:+	RP11-113D6.10	29818	chr11:18234628:+	ONLY_REF_SPLICE	YES	239	0	0.07	1	0.1373	0.0634	EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2,RP11-113D6.10->chr11:18230685-18236109:+	KE39_STOMACH	0.07	1	0.2007	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MT-ATP6--MT-CO1	14	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	12667	34064	0	0	0.1478	0.0106	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KE39_STOMACH	0	0	0.1584	FALSE	183	104	9	328	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	8	25	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	22479	0	0	1	0.0845	0.264	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.3485	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	RP11-444D3.1--SOX5	1	52	RP11-444D3.1	1258	chr12:24715267:-	SOX5	13900	chr12:24102595:-	ONLY_REF_SPLICE	YES	30	18	0.64	0.75	0.0106	0.5491	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KE39_STOMACH	0.64	0.75	0.5597	TRUE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	MT-TA--MT-TC	10	15	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1056	0.1584	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KE39_STOMACH	1	1	0.264	FALSE	462	80	0	856	0	FALSE	ACH-000507
KE39_STOMACH	ARPC1A--MYH16	1	50	ARPC1A	2200	chr7:98931040:+	MYH16	63904	chr7:98908362:+	ONLY_REF_SPLICE	YES	947	71	0.05	0.42	0.0106	0.528	LOCAL_REARRANGEMENT:+:[14768],ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	KE39_STOMACH	0.05	0.42	0.5386	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	BMP4--RPS19	11	10	BMP4	8572	chr14:54416954:-	RPS19	12410	chr19:42364325:+	INCL_NON_REF_SPLICE	YES	3570	1	0.01	0.95	0.1162	0.1056	BMP4->bone_morphogenetic_protein_4,chr14:54416454-54425479:-,RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19	KE39_STOMACH	0.01	0.95	0.2218	TRUE	0	0	0	5	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	4	37	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	6279	0	0.01	1	0.0422	0.3907	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0.01	1	0.4329	FALSE	222	212	16	282	0	FALSE	ACH-000507
KE39_STOMACH	MT-TA--MT-TC	8	21	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	0.2218	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KE39_STOMACH	1	1	0.3063	FALSE	462	80	0	856	0	FALSE	ACH-000507
KE39_STOMACH	ARPC1A--MYH16	9	16	ARPC1A	1107	chr7:98923627:+	MYH16	62672	chr7:98904232:+	ONLY_REF_SPLICE	YES	62	0	0.29	1	0.095	0.169	LOCAL_REARRANGEMENT:+:[14768],ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	KE39_STOMACH	0.29	1	0.264	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MT-CO2--MT-CO1	12	4	MT-CO2	1249	chrM:7834:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11	34588	0.59	0	0.1267	0.0422	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KE39_STOMACH	0	0.59	0.1689	FALSE	36	10	0	27	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	3	36	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1491	0	0.03	1	0.0317	0.3801	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0.03	1	0.4118	FALSE	216	209	16	281	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ND4L	3	34	MT-ND4	1039	chrM:10798:+	MT-ND4L	5496	chrM:10587:+	INCL_NON_REF_SPLICE	YES	5	1	0.88	0.97	0.0317	0.359	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KE39_STOMACH	0.88	0.97	0.3907	FALSE	344	821	44	306	0	FALSE	ACH-000507
KE39_STOMACH	SLC1A5--MT-ND4L	9	10	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	2539	0	0.01	1	0.095	0.1056	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KE39_STOMACH	0.01	1	0.2006	FALSE	0	0	0	189	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	10	5	MT-ND4	1261	chrM:11020:+	MT-ATP8	5407	chrM:8394:+	INCL_NON_REF_SPLICE	YES	19059	0	0	1	0.1056	0.0528	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.1584	FALSE	231	205	14	283	0	FALSE	ACH-000507
KE39_STOMACH	CTD-2319I12.2--SRCIN1	9	8	CTD-2319I12.2	1164	chr17:58156833:+	SRCIN1	12659	chr17:36720549:-	ONLY_REF_SPLICE	YES	0	5	1	0.77	0.095	0.0845	CTD-2319I12.2->chr17:58156670-58166056:+,SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-	KE39_STOMACH	0.77	1	0.1795	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	4	28	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	21067	0	0	1	0.0422	0.2957	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.3379	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	6	20	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	23038	0	0	1	0.0634	0.2112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.2746	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ND4L	7	16	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2445	0	0.01	1	0.0739	0.169	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KE39_STOMACH	0.01	1	0.2429	FALSE	344	827	44	306	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ND4L	7	16	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1427	0	0.02	1	0.0739	0.169	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KE39_STOMACH	0.02	1	0.2429	FALSE	344	827	44	306	0	FALSE	ACH-000507
KE39_STOMACH	USP3-AS1--TAX1BP1	7	16	USP3-AS1	7939	chr15:63881028:-	TAX1BP1	35688	chr7:27867357:+	ONLY_REF_SPLICE	YES	11	600	0.68	0.04	0.0739	0.169	USP3-AS1->USP3_antisense_RNA_1,chr15:63836446-63893788:-,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	KE39_STOMACH	0.04	0.68	0.2429	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	8	11	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	25230	89	0	0.18	0.0845	0.1162	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.18	0.2007	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	4	26	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	21210	0	0	1	0.0422	0.2746	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.3168	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	6	18	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	20041	245	0	0.09	0.0634	0.1901	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.09	0.2535	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	RNF10--SIRT4	4	26	RNF10	5361	chr12:120984404:+	SIRT4	25895	chr12:120741364:+	ONLY_REF_SPLICE	YES	345	0	0.08	1	0.0422	0.2746	RNF10->chr12:120971283-121015397:+,ring_finger_protein_10,SIRT4->chr12:120740119-120751052:+,sirtuin_4	KE39_STOMACH	0.08	1	0.3168	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MT-ATP6--MT-CO1	10	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12329	34572	0	0	0.1056	0.0106	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KE39_STOMACH	0	0	0.1162	FALSE	183	104	9	328	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	4	24	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	22717	0	0	1	0.0422	0.2534	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.2956	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	OR51S1--TP53I11	10	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1056	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	KE39_STOMACH	1	1	0.1056	TRUE	402	216	10	229	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	5	19	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20041	89	0	0.21	0.0528	0.2006	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.21	0.2534	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	3	26	MT-ND4	1959	chrM:11718:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	21807	0	0	1	0.0317	0.2746	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.3063	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	CCND1--PTMA	9	1	CCND1	5984	chr11:69466002:+	PTMA	16664	chr2:232576073:+	INCL_NON_REF_SPLICE	YES	744	7760	0.01	0	0.095	0.0106	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KE39_STOMACH	0	0.01	0.1056	TRUE	0	0	0	2	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	3	25	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2989	89	0.01	0.24	0.0317	0.264	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0.01	0.24	0.2957	FALSE	216	209	16	281	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	5	16	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	24384	0	0	1	0.0528	0.169	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.2218	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	5	16	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	24386	0	0	1	0.0528	0.169	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.2218	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ND4L	3	24	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	75	0	0.26	1	0.0317	0.2534	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KE39_STOMACH	0.26	1	0.2851	FALSE	344	826	44	306	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ND4L	5	16	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10836	0	0	1	0.0528	0.169	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KE39_STOMACH	0	1	0.2218	FALSE	344	827	44	306	0	FALSE	ACH-000507
KE39_STOMACH	USP3-AS1--TAX1BP1	6	12	USP3-AS1	2001	chr15:63892788:-	TAX1BP1	33998	chr7:27855968:+	ONLY_REF_SPLICE	YES	16	466	0.53	0.04	0.0634	0.1267	USP3-AS1->USP3_antisense_RNA_1,chr15:63836446-63893788:-,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	KE39_STOMACH	0.04	0.53	0.1901	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	5	15	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	25298	0	0	1	0.0528	0.1584	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.2112	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	8	3	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	17128	0	0	1	0.0845	0.0317	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.1162	FALSE	230	197	14	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	6	11	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	23348	1530	0	0.01	0.0634	0.1162	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.01	0.1796	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	USP3-AS1--TAX1BP1	4	19	USP3-AS1	4499	chr15:63886894:-	TAX1BP1	33998	chr7:27855968:+	ONLY_REF_SPLICE	YES	11	466	0.68	0.05	0.0422	0.2006	USP3-AS1->USP3_antisense_RNA_1,chr15:63836446-63893788:-,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	KE39_STOMACH	0.05	0.68	0.2428	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	KRAS--RP11-114G22.1	8	2	KRAS	7055	chr12:25378548:-	RP11-114G22.1	24375	chr12:23040898:+	ONLY_REF_SPLICE	YES	1416	4	0.01	0.71	0.0845	0.0211	KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-,RP11-114G22.1->chr12:22852793-23327057:+	KE39_STOMACH	0.01	0.71	0.1056	TRUE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	3	22	MT-ND4	1821	chrM:11580:+	MT-ATP8	5444	chrM:8431:+	INCL_NON_REF_SPLICE	YES	22818	0	0	1	0.0317	0.2323	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.264	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	8	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17115	9	0	0.53	0.0845	0.0211	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.53	0.1056	FALSE	230	193	14	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-TA--MT-TC	4	18	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0.1901	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KE39_STOMACH	1	1	0.2323	FALSE	462	80	0	856	0	FALSE	ACH-000507
KE39_STOMACH	USP3-AS1--TAX1BP1	5	14	USP3-AS1	4499	chr15:63886894:-	TAX1BP1	35688	chr7:27867357:+	ONLY_REF_SPLICE	YES	11	600	0.63	0.03	0.0528	0.1478	USP3-AS1->USP3_antisense_RNA_1,chr15:63836446-63893788:-,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	KE39_STOMACH	0.03	0.63	0.2006	TRUE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	ZNF136--NTF4	8	2	ZNF136	1143	chr19:12274021:+	NTF4	13768	chr19:49567119:-	ONLY_REF_SPLICE	YES	11	6	0.48	0.62	0.0845	0.0211	ZNF136->chr19:12273879-12300064:+,zinc_finger_protein_136,NTF4->chr19:49559050-49568333:-,neurotrophin_4	KE39_STOMACH	0.48	0.62	0.1056	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	CNN2--ILF3	4	17	CNN2	6052	chr19:1036561:+	ILF3	13885	chr19:10777168:+	ONLY_REF_SPLICE	YES	275	528	0.07	0.04	0.0422	0.1795	CNN2->calponin_2,chr19:1026298-1039068:+,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	KE39_STOMACH	0.04	0.07	0.2217	TRUE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	KRAS--RP11-114G22.1	7	5	KRAS	7055	chr12:25378548:-	RP11-114G22.1	22126	chr12:23014003:+	ONLY_REF_SPLICE	YES	1416	2	0.01	0.86	0.0739	0.0528	KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-,RP11-114G22.1->chr12:22852793-23327057:+	KE39_STOMACH	0.01	0.86	0.1267	TRUE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	7	5	MT-ND4	1260	chrM:11019:+	MT-ATP8	5406	chrM:8393:+	INCL_NON_REF_SPLICE	YES	18776	0	0	1	0.0739	0.0528	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.1267	FALSE	231	205	14	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	3	21	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	23167	0	0	1	0.0317	0.2218	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.2535	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	4	16	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	24414	0	0	1	0.0422	0.169	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.2112	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-TA--MT-TY	8	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	KE39_STOMACH	1	1	0.0845	FALSE	13	214	14	42	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	3	19	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19116	89	0	0.2	0.0317	0.2006	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.2	0.2323	FALSE	231	215	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	3	19	MT-ND4	1759	chrM:11518:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	23061	0	0	1	0.0317	0.2006	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.2323	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	RP11-114H23.1--RP11-114H23.2	6	7	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0634	0.0739	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	KE39_STOMACH	1	1	0.1373	FALSE	81	155	12	160	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	4	13	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	22803	505	0	0.03	0.0422	0.1373	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.03	0.1795	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	KRAS--RP11-114G22.1	5	8	KRAS	7055	chr12:25378548:-	RP11-114G22.1	19056	chr12:22940494:+	ONLY_REF_SPLICE	YES	1416	0	0.01	1	0.0528	0.0845	KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-,RP11-114G22.1->chr12:22852793-23327057:+	KE39_STOMACH	0.01	1	0.1373	TRUE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	4	12	MT-ND4	1311	chrM:11070:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	24033	0	0	1	0.0422	0.1267	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.1689	FALSE	231	205	14	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	3	14	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	23406	9	0	0.65	0.0317	0.1478	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.65	0.1795	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	3	13	MT-ND4	1540	chrM:11299:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	27061	89	0	0.15	0.0317	0.1373	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.15	0.169	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	5	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	22698	1967	0	0.01	0.0528	0.0528	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.01	0.1056	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	USP3-AS1--TAX1BP1	4	9	USP3-AS1	2001	chr15:63892788:-	TAX1BP1	35688	chr7:27867357:+	ONLY_REF_SPLICE	YES	16	600	0.45	0.02	0.0422	0.095	USP3-AS1->USP3_antisense_RNA_1,chr15:63836446-63893788:-,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	KE39_STOMACH	0.02	0.45	0.1372	TRUE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	MT-ATP6--MT-CO1	6	0	MT-ATP6	1380	chrM:8906:+	MT-CO1	5953	chrM:7175:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KE39_STOMACH	1	1	0.0634	FALSE	183	104	9	328	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	3	12	MT-ND4	1533	chrM:11292:+	MT-ATP8	5479	chrM:8466:+	INCL_NON_REF_SPLICE	YES	27194	8	0	0.65	0.0317	0.1267	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.65	0.1584	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	3	12	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	NO	22758	845	0	0.02	0.0317	0.1267	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.02	0.1584	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ND4L	4	8	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	243	0	0.05	1	0.0422	0.0845	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KE39_STOMACH	0.05	1	0.1267	FALSE	344	827	44	306	0	FALSE	ACH-000507
KE39_STOMACH	MT-TA--MT-TY	6	0	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	KE39_STOMACH	1	1	0.0634	FALSE	13	214	14	42	0	FALSE	ACH-000507
KE39_STOMACH	TEAD1--CTC-497E21.5	4	8	TEAD1	4496	chr11:12785981:+	CTC-497E21.5	29824	chr11:13076581:-	ONLY_REF_SPLICE	YES	49	0	0.2	1	0.0422	0.0845	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,CTC-497E21.5->chr11:13076162-13156386:-	KE39_STOMACH	0.2	1	0.1267	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	4	7	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	24058	1530	0	0.01	0.0422	0.0739	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.01	0.1161	FALSE	231	205	14	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	3	11	MT-ND4	1510	chrM:11269:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	25507	9	0	0.61	0.0317	0.1162	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.61	0.1479	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	5	3	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	17696	0	0	1	0.0528	0.0317	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.0845	FALSE	231	204	14	283	0	FALSE	ACH-000507
KE39_STOMACH	RHBDF2--TEX2	3	11	RHBDF2	6284	chr17:74477457:-	TEX2	36339	chr17:62232327:-	ONLY_REF_SPLICE	YES	143	58	0.09	0.19	0.0317	0.1162	RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila),TEX2->chr17:62224587-62340661:-,testis_expressed_2	KE39_STOMACH	0.09	0.19	0.1479	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ID3--ID1	5	2	ID3	1566	chr1:23885720:-	ID1	6256	chr20:30193464:+	INCL_NON_REF_SPLICE	YES	2256	12150	0	0	0.0528	0.0211	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,NUCLCLUST,PROTCLUST,ID3->Oncogene{Bushman},chr1:23884409-23886285:-,inhibitor_of_DNA_binding_3,_HLH_protein,ID1->chr20:30193086-30194318:+,inhibitor_of_DNA_binding_1,_HLH_protein	KE39_STOMACH	0	0	0.0739	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	3	10	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	26764	797	0	0.02	0.0317	0.1056	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.02	0.1373	FALSE	231	217	16	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-TA--MT-TC	5	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0.0106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KE39_STOMACH	1	1	0.0634	FALSE	462	80	0	856	0	FALSE	ACH-000507
KE39_STOMACH	MT-TA--MT-TY	5	1	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0.0106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	KE39_STOMACH	1	1	0.0634	FALSE	13	214	14	42	0	FALSE	ACH-000507
KE39_STOMACH	RP11-120D5.1--MID1	3	9	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	11	88	0.52	0.12	0.0317	0.095	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KE39_STOMACH	0.12	0.52	0.1267	FALSE	0	9	0	55	0	FALSE	ACH-000507
KE39_STOMACH	RP11-120D5.1--MID1	3	9	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	10	88	0.55	0.12	0.0317	0.095	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KE39_STOMACH	0.12	0.55	0.1267	FALSE	16	356	14	466	0	FALSE	ACH-000507
KE39_STOMACH	ATG9A--TUBA4A	4	4	ATG9A	6837	chr2:220088307:-	TUBA4A	26823	chr2:220116952:-	ONLY_REF_SPLICE	YES	147	15	0.05	0.35	0.0422	0.0422	LOCAL_REARRANGEMENT:-:[19994],ATG9A->autophagy_related_9A,chr2:220074494-220094439:-,TUBA4A->chr2:220114433-220142892:-,tubulin_alpha_4a	KE39_STOMACH	0.05	0.35	0.0844	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	HBS1L--FABP7	5	0	HBS1L	5766	chr6:135360711:-	FABP7	33802	chr6:123101436:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	HBS1L->HBS1_like_translational_GTPase,chr6:135281516-135424194:-,FABP7->chr6:123100620-123105219:+,fatty_acid_binding_protein_7	KE39_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MT-CO2--MT-CO1	4	4	MT-CO2	1256	chrM:7841:+	MT-CO1	5313	chrM:6532:+	INCL_NON_REF_SPLICE	YES	10	32659	0.44	0	0.0422	0.0422	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KE39_STOMACH	0	0.44	0.0844	FALSE	36	10	0	27	0	FALSE	ACH-000507
KE39_STOMACH	MT-CO2--MT-CO1	5	0	MT-CO2	1104	chrM:7689:+	MT-CO1	5731	chrM:6950:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KE39_STOMACH	1	1	0.0528	FALSE	36	10	0	27	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	3	8	MT-ND4	1289	chrM:11048:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	21032	0	0	1	0.0317	0.0845	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.1162	FALSE	231	205	14	283	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ND4L	3	8	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	121	0	0.08	1	0.0317	0.0845	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KE39_STOMACH	0.08	1	0.1162	FALSE	344	827	44	306	0	FALSE	ACH-000507
KE39_STOMACH	NRIP1--AF127936.7	4	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	37	0	0.18	1	0.0422	0.0422	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KE39_STOMACH	0.18	1	0.0844	FALSE	164	806	69	479	0	FALSE	ACH-000507
KE39_STOMACH	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KE39_STOMACH	1	1	0.0528	TRUE	465	1949	224	605	0	FALSE	ACH-000507
KE39_STOMACH	ARHGAP44--LINC00670	3	7	ARHGAP44	1353	chr17:12693208:+	LINC00670	34069	chr17:12487877:+	ONLY_REF_SPLICE	YES	11	0	0.48	1	0.0317	0.0739	ARHGAP44->Rho_GTPase_activating_protein_44,chr17:12692856-12894960:+,LINC00670->chr17:12453099-12546171:+,long_intergenic_non-protein_coding_RNA_670	KE39_STOMACH	0.48	1	0.1056	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MT-CO2--MT-CO1	3	7	MT-CO2	1359	chrM:7944:+	MT-CO1	5335	chrM:6554:+	INCL_NON_REF_SPLICE	YES	6	35505	0.62	0	0.0317	0.0739	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KE39_STOMACH	0	0.62	0.1056	FALSE	36	10	0	27	0	FALSE	ACH-000507
KE39_STOMACH	RNF10--SIRT4	4	3	RNF10	6561	chr12:120990501:+	SIRT4	27393	chr12:120750259:+	ONLY_REF_SPLICE	YES	260	95	0.03	0.07	0.0422	0.0317	RNF10->chr12:120971283-121015397:+,ring_finger_protein_10,SIRT4->chr12:120740119-120751052:+,sirtuin_4	KE39_STOMACH	0.03	0.07	0.0739	TRUE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	MT-ATP6--MT-CO1	4	2	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	15327	31204	0	0	0.0422	0.0211	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KE39_STOMACH	0	0	0.0633	FALSE	183	104	9	328	0	FALSE	ACH-000507
KE39_STOMACH	MT-ATP6--MT-CO1	4	2	MT-ATP6	1189	chrM:8715:+	MT-CO1	5220	chrM:6442:+	INCL_NON_REF_SPLICE	YES	17080	31286	0	0	0.0422	0.0211	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KE39_STOMACH	0	0	0.0633	FALSE	183	104	9	328	0	FALSE	ACH-000507
KE39_STOMACH	MT-CO2--MT-CO1	3	6	MT-CO2	1493	chrM:8078:+	MT-CO1	5625	chrM:6844:+	INCL_NON_REF_SPLICE	YES	1	17162	0.9	0	0.0317	0.0634	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KE39_STOMACH	0	0.9	0.0951	FALSE	36	10	0	27	0	FALSE	ACH-000507
KE39_STOMACH	TMEM54--MT-CO2	4	2	TMEM54	2326	chr1:33363811:-	MT-CO2	8517	chrM:7597:+	INCL_NON_REF_SPLICE	YES	932	0	0.01	1	0.0422	0.0211	TMEM54->chr1:33360195-33367039:-,transmembrane_protein_54,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KE39_STOMACH	0.01	1	0.0633	FALSE	0	0	0	10	0	FALSE	ACH-000507
KE39_STOMACH	CCND1--PTMA	4	1	CCND1	5978	chr11:69465996:+	PTMA	16657	chr2:232576066:+	INCL_NON_REF_SPLICE	NO	789	7914	0.01	0	0.0422	0.0106	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KE39_STOMACH	0	0.01	0.0528	FALSE	0	0	0	2	0	FALSE	ACH-000507
KE39_STOMACH	SAMD5--SASH1	4	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	13	0	0.28	1	0.0422	0.0106	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	KE39_STOMACH	0.28	1	0.0528	TRUE	53	396	64	110	0	FALSE	ACH-000507
KE39_STOMACH	USP3-AS1--TAX1BP1	1	13	USP3-AS1	3407	chr15:63891382:-	TAX1BP1	33998	chr7:27855968:+	ONLY_REF_SPLICE	YES	13	466	0.52	0.03	0.0106	0.1373	USP3-AS1->USP3_antisense_RNA_1,chr15:63836446-63893788:-,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	KE39_STOMACH	0.03	0.52	0.1479	TRUE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	EIF1--KRT18	4	0	EIF1	1093	chr17:39845229:+	KRT18	8033	chr12:53342903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,KRT18->chr12:53342655-53346685:+,keratin_18	KE39_STOMACH	1	1	0.0422	TRUE	0	0	0	2	0	TRUE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	3	4	MT-ND4	1239	chrM:10998:+	MT-ATP8	5384	chrM:8371:+	INCL_NON_REF_SPLICE	YES	17696	0	0	1	0.0317	0.0422	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	1	0.0739	FALSE	231	204	14	283	0	FALSE	ACH-000507
KE39_STOMACH	ST6GALNAC4--FAM102A	3	3	ST6GALNAC4	4687	chr9:130674547:-	FAM102A	16414	chr9:130712818:-	ONLY_REF_SPLICE	YES	180	174	0.03	0.03	0.0317	0.0317	LOCAL_REARRANGEMENT:-:[23541],ST6GALNAC4->ST6_N-acetylgalactosaminide_alpha-2,6-sialyltransferase_4,chr9:130670165-130679317:-,FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A	KE39_STOMACH	0.03	0.03	0.0634	TRUE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	ARHGAP44--LINC00670	2	6	ARHGAP44	1353	chr17:12693208:+	LINC00670	35231	chr17:12493758:+	ONLY_REF_SPLICE	YES	11	0	0.42	1	0.0211	0.0634	ARHGAP44->Rho_GTPase_activating_protein_44,chr17:12692856-12894960:+,LINC00670->chr17:12453099-12546171:+,long_intergenic_non-protein_coding_RNA_670	KE39_STOMACH	0.42	1	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	C4orf19--USO1	3	2	C4orf19	1100	chr4:37455662:+	USO1	26650	chr4:76721771:+	ONLY_REF_SPLICE	YES	1	193	0.83	0.03	0.0317	0.0211	C4orf19->chr4:37455563-37625117:+,chromosome_4_open_reading_frame_19,USO1->USO1_vesicle_transport_factor,chr4:76649777-76735382:+	KE39_STOMACH	0.03	0.83	0.0528	TRUE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	17248	89	0	0.05	0.0317	0.0211	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KE39_STOMACH	0	0.05	0.0528	FALSE	230	198	14	283	0	FALSE	ACH-000507
KE39_STOMACH	SCARB1--UBC	3	2	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	216	148	0.02	0.03	0.0317	0.0211	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	KE39_STOMACH	0.02	0.03	0.0528	TRUE	55	66	6	101	0	FALSE	ACH-000507
KE39_STOMACH	C9orf156--CA10	3	1	C9orf156	1153	chr9:100684700:-	CA10	19924	chr17:49825178:-	ONLY_REF_SPLICE	YES	11	0	0.27	1	0.0317	0.0106	C9orf156->chr9:100666771-100684852:-,CA10->carbonic_anhydrase_10,chr17:49707674-50237377:-	KE39_STOMACH	0.27	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MT-ATP6--MT-CO1	3	1	MT-ATP6	1130	chrM:8656:+	MT-CO1	5092	chrM:6314:+	INCL_NON_REF_SPLICE	YES	12943	30919	0	0	0.0317	0.0106	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KE39_STOMACH	0	0	0.0423	FALSE	183	104	9	328	0	FALSE	ACH-000507
KE39_STOMACH	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0211	0.0528	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KE39_STOMACH	0.88	1	0.0739	FALSE	515	4851	409	746	0	FALSE	ACH-000507
KE39_STOMACH	SLC1A5--AP2S1	2	5	SLC1A5	6566	chr19:47281932:-	AP2S1	14728	chr19:47349399:-	ONLY_REF_SPLICE	YES	3246	86	0	0.08	0.0211	0.0528	LOCAL_REARRANGEMENT:-:[49542],SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,AP2S1->adaptor_related_protein_complex_2_sigma_1_subunit,chr19:47341393-47354249:-	KE39_STOMACH	0	0.08	0.0739	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	C9orf16--LCN2	2	4	C9orf16	1227	chr9:130922765:+	LCN2	8320	chr9:130912517:+	ONLY_REF_SPLICE	NO	1042	5630	0.01	0	0.0211	0.0422	LOCAL_REARRANGEMENT:+:[6805],C9orf16->chr9:130922539-130926207:+,chromosome_9_open_reading_frame_16,LCN2->chr9:130911350-130915734:+,lipocalin_2	KE39_STOMACH	0	0.01	0.0633	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	KANSL1--TMIGD1	3	0	KANSL1	7536	chr17:44248221:-	TMIGD1	33979	chr17:28656547:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,TMIGD1->chr17:28643351-28661077:-,transmembrane_and_immunoglobulin_domain_containing_1	KE39_STOMACH	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KE39_STOMACH	1	1	0.0317	FALSE	183	104	9	328	0	FALSE	ACH-000507
KE39_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1130	chrM:8656:+	MT-CO1	5625	chrM:6847:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KE39_STOMACH	1	1	0.0317	FALSE	183	104	9	328	0	FALSE	ACH-000507
KE39_STOMACH	MT-CO2--MT-CO1	3	0	MT-CO2	1108	chrM:7693:+	MT-CO1	5016	chrM:6235:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KE39_STOMACH	1	1	0.0317	FALSE	36	10	0	27	0	FALSE	ACH-000507
KE39_STOMACH	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KE39_STOMACH	1	1	0.0317	TRUE	0	0	0	434	0	FALSE	ACH-000507
KE39_STOMACH	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KE39_STOMACH	1	1	0.0317	TRUE	0	0	0	434	0	FALSE	ACH-000507
KE39_STOMACH	RNF10--SIRT4	3	0	RNF10	5361	chr12:120984404:+	SIRT4	27393	chr12:120750259:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	RNF10->chr12:120971283-121015397:+,ring_finger_protein_10,SIRT4->chr12:120740119-120751052:+,sirtuin_4	KE39_STOMACH	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	YEATS4--LYZ	2	4	YEATS4	7243	chr12:69764755:+	LYZ	13098	chr12:69743888:+	ONLY_REF_SPLICE	NO	151	11980	0.04	0	0.0211	0.0422	LOCAL_REARRANGEMENT:+:[5469],YEATS4->YEATS_domain_containing_4,chr12:69753483-69784576:+,LYZ->chr12:69742121-69748014:+,lysozyme	KE39_STOMACH	0	0.04	0.0633	FALSE	0	7	0	3	6	FALSE	ACH-000507
KE39_STOMACH	TGFB1--RBPMS	1	7	TGFB1	5579	chr19:41848075:-	RBPMS	26452	chr8:30361803:+	ONLY_REF_SPLICE	NO	54	45	0.13	0.15	0.0106	0.0739	TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1,RBPMS->RNA_binding_protein_with_multiple_splicing,chr8:30241944-30429778:+	KE39_STOMACH	0.13	0.15	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	LRMP--CASC1	2	2	LRMP	16910	chr12:25222365:+	CASC1	50789	chr12:25267804:-	ONLY_REF_SPLICE	YES	927	6	0	0.4	0.0211	0.0211	LOCAL_INVERSION:+:-:[86],LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein,CASC1->cancer_susceptibility_candidate_1,chr12:25261354-25348096:-	KE39_STOMACH	0	0.4	0.0422	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	ARHGAP24--TECRL	2	1	ARHGAP24	6161	chr4:86643125:+	TECRL	30664	chr4:65194274:-	ONLY_REF_SPLICE	YES	23	1	0.12	0.75	0.0211	0.0106	ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+,TECRL->chr4:65140975-65275186:-,trans-2,3-enoyl-CoA_reductase-like	KE39_STOMACH	0.12	0.75	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	ARHGAP24--TECRL	2	1	ARHGAP24	6161	chr4:86643125:+	TECRL	29612	chr4:65240941:-	ONLY_REF_SPLICE	YES	23	1	0.12	0.75	0.0211	0.0106	ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+,TECRL->chr4:65140975-65275186:-,trans-2,3-enoyl-CoA_reductase-like	KE39_STOMACH	0.12	0.75	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MYO1D--CTB-91J4.1	2	1	MYO1D	31205	chr17:30932105:-	CTB-91J4.1	42283	chr17:34474961:+	ONLY_REF_SPLICE	YES	329	0	0.01	1	0.0211	0.0106	MYO1D->chr17:30819540-31204195:-,myosin_ID,CTB-91J4.1->chr17:34443570-34504870:+	KE39_STOMACH	0.01	1	0.0317	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0.0528	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KE39_STOMACH	1	1	0.0634	FALSE	467	2173	244	435	0	FALSE	ACH-000507
KE39_STOMACH	SLC1A5--AP2S1	2	1	SLC1A5	6566	chr19:47281932:-	AP2S1	16298	chr19:47342835:-	ONLY_REF_SPLICE	YES	3246	1039	0	0	0.0211	0.0106	LOCAL_REARRANGEMENT:-:[49542],SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,AP2S1->adaptor_related_protein_complex_2_sigma_1_subunit,chr19:47341393-47354249:-	KE39_STOMACH	0	0	0.0317	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	ABR--UBB	2	0	ABR	28482	chr17:953290:-	UBB	44268	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,UBB->chr17:16284112-16286059:+,ubiquitin_B	KE39_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	C9orf16--LCN2	1	4	C9orf16	1227	chr9:130922765:+	LCN2	9720	chr9:130913917:+	ONLY_REF_SPLICE	YES	1042	6138	0	0	0.0106	0.0422	LOCAL_REARRANGEMENT:+:[6805],C9orf16->chr9:130922539-130926207:+,chromosome_9_open_reading_frame_16,LCN2->chr9:130911350-130915734:+,lipocalin_2	KE39_STOMACH	0	0	0.0528	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	C9orf16--LCN2	1	4	C9orf16	1227	chr9:130922765:+	LCN2	7565	chr9:130911762:+	ONLY_REF_SPLICE	NO	1042	11	0	0.31	0.0106	0.0422	LOCAL_REARRANGEMENT:+:[6805],C9orf16->chr9:130922539-130926207:+,chromosome_9_open_reading_frame_16,LCN2->chr9:130911350-130915734:+,lipocalin_2	KE39_STOMACH	0	0.31	0.0528	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	GNPTG--AP3D1	2	0	GNPTG	1384	chr16:1402307:+	AP3D1	35473	chr19:2102267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GNPTG->N-acetylglucosamine-1-phosphate_transferase_gamma_subunit,chr16:1401924-1413352:+,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	KE39_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	KANSL1--TMIGD1	2	0	KANSL1	7536	chr17:44248221:-	TMIGD1	32872	chr17:28659176:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,TMIGD1->chr17:28643351-28661077:-,transmembrane_and_immunoglobulin_domain_containing_1	KE39_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	MISP--RIPK4	2	0	MISP	1046	chr19:751171:+	RIPK4	15503	chr21:43169363:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	MISP->chr19:751126-764319:+,mitotic_spindle_positioning,RIPK4->chr21:43159529-43187266:-,receptor_interacting_serine/threonine_kinase_4	KE39_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KE39_STOMACH	1	1	0.0211	TRUE	64	13	3	59	0	FALSE	ACH-000507
KE39_STOMACH	RPS3--ANP32A	2	0	RPS3	2292	chr11:75111821:+	ANP32A	20609	chr15:69080258:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-	KE39_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	TRAPPC9--KCNK9	2	0	TRAPPC9	55504	chr8:140898123:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	KE39_STOMACH	1	1	0.0211	FALSE	7	13	2	16	0	FALSE	ACH-000507
KE39_STOMACH	ZNF136--NTF4	2	0	ZNF136	1143	chr19:12274021:+	NTF4	16836	chr19:49561603:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ZNF136->chr19:12273879-12300064:+,zinc_finger_protein_136,NTF4->chr19:49559050-49568333:-,neurotrophin_4	KE39_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	CNN2--ILF3	1	3	CNN2	4298	chr19:1032662:+	ILF3	15047	chr19:10781192:+	ONLY_REF_SPLICE	NO	314	486	0.01	0.01	0.0106	0.0317	CNN2->calponin_2,chr19:1026298-1039068:+,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	KE39_STOMACH	0.01	0.01	0.0423	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	NRIP1--AF127936.7	1	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	26	0	0.13	1	0.0106	0.0317	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KE39_STOMACH	0.13	1	0.0423	FALSE	125	705	46	456	0	FALSE	ACH-000507
KE39_STOMACH	RNF10--SIRT4	1	3	RNF10	2489	chr12:120972771:+	SIRT4	25895	chr12:120741364:+	ONLY_REF_SPLICE	YES	302	0	0.01	1	0.0106	0.0317	RNF10->chr12:120971283-121015397:+,ring_finger_protein_10,SIRT4->chr12:120740119-120751052:+,sirtuin_4	KE39_STOMACH	0.01	1	0.0423	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	FBRSL1--NOC4L	1	2	FBRSL1	12572	chr12:133136816:+	NOC4L	33548	chr12:132635803:+	ONLY_REF_SPLICE	NO	116	65	0.03	0.04	0.0106	0.0211	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	KE39_STOMACH	0.03	0.04	0.0317	TRUE	3	48	0	26	0	FALSE	ACH-000507
KE39_STOMACH	RP11-444D3.1--C2CD5	1	2	RP11-444D3.1	1258	chr12:24715267:-	C2CD5	13061	chr12:22697113:-	ONLY_REF_SPLICE	YES	30	498	0.09	0.01	0.0106	0.0211	RP11-444D3.1->chr12:24366190-24715524:-,C2CD5->C2_calcium-dependent_domain_containing_5,chr12:22601517-22697480:-	KE39_STOMACH	0.01	0.09	0.0317	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	SLC1A5--AP2S1	1	2	SLC1A5	5332	chr19:47285640:-	AP2S1	14728	chr19:47349399:-	ONLY_REF_SPLICE	NO	2347	86	0	0.03	0.0106	0.0211	LOCAL_REARRANGEMENT:-:[49542],SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,AP2S1->adaptor_related_protein_complex_2_sigma_1_subunit,chr19:47341393-47354249:-	KE39_STOMACH	0	0.03	0.0317	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	3735	265	0	0.01	0.0106	0.0211	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	KE39_STOMACH	0	0.01	0.0317	FALSE	6	50	7	115	0	FALSE	ACH-000507
KE39_STOMACH	AC005152.2--VMP1	1	1	AC005152.2	7906	chr17:70114413:-	VMP1	42698	chr17:57842332:+	ONLY_REF_SPLICE	YES	0	271	1	0.01	0.0106	0.0106	AC005152.2->chr17:70033455-70217977:-,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KE39_STOMACH	0.01	1	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	ARHGAP44--MYOCD	1	1	ARHGAP44	1353	chr17:12693208:+	MYOCD	34127	chr17:12608445:+	ONLY_REF_SPLICE	YES	11	0	0.15	1	0.0106	0.0106	LOCAL_REARRANGEMENT:+:[20590],ARHGAP44->Rho_GTPase_activating_protein_44,chr17:12692856-12894960:+,MYOCD->chr17:12569207-12672266:+,myocardin	KE39_STOMACH	0.15	1	0.0212	TRUE	0	1	0	1	1	TRUE	ACH-000507
KE39_STOMACH	AXIN2--GANAB	1	1	AXIN2	4842	chr17:63553924:-	GANAB	18919	chr11:62407203:-	ONLY_REF_SPLICE	YES	1352	25	0	0.07	0.0106	0.0106	AXIN2->Oncogene{Bushman},axin_2,chr17:63524681-63557765:-,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	KE39_STOMACH	0	0.07	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	106	257	0.02	0.01	0.0106	0.0106	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	KE39_STOMACH	0.01	0.02	0.0212	FALSE	118	557	29	88	0	FALSE	ACH-000507
KE39_STOMACH	COX10-AS1--RP11-84E24.3	1	1	COX10-AS1	1224	chr17:13972589:-	RP11-84E24.3	21185	chr17:70033186:+	ONLY_REF_SPLICE	YES	51	1	0.04	0.67	0.0106	0.0106	COX10-AS1->COX10_antisense_RNA_1,chr17:13659795-13972812:-,RP11-84E24.3->chr17:70026432-70034889:+	KE39_STOMACH	0.04	0.67	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	DDX5--AXIN2	1	1	DDX5	3124	chr17:62502194:-	AXIN2	15496	chr17:63554854:-	ONLY_REF_SPLICE	YES	1278	784	0	0	0.0106	0.0106	DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-,AXIN2->Oncogene{Bushman},axin_2,chr17:63524681-63557765:-	KE39_STOMACH	0	0	0.0212	FALSE	1	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	FOSB--AXIN2	1	1	FOSB	1718	chr19:45971970:+	AXIN2	13934	chr17:63554854:-	ONLY_REF_SPLICE	YES	116	784	0.02	0	0.0106	0.0106	FOSB->FosB_proto-oncogene,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr19:45971253-45978437:+,AXIN2->Oncogene{Bushman},axin_2,chr17:63524681-63557765:-	KE39_STOMACH	0	0.02	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	FRYL--OCIAD1	1	1	FRYL	3486	chr4:48712536:-	OCIAD1	90028	chr4:48850416:+	ONLY_REF_SPLICE	YES	43	1158	0.04	0	0.0106	0.0106	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Heart_-_Left_Ventricle=1},LOCAL_INVERSION:-:+:[24890],FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,OCIAD1->OCIA_domain_containing_1,chr4:48807229-48863834:+	KE39_STOMACH	0	0.04	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	GAPVD1--RABEPK	1	1	GAPVD1	1166	chr9:128024238:+	RABEPK	48591	chr9:127982818:+	ONLY_REF_SPLICE	YES	111	266	0.02	0.01	0.0106	0.0106	LOCAL_REARRANGEMENT:+:[27636],GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,RABEPK->Rab9_effector_protein_with_kelch_motifs,chr9:127962821-127996437:+	KE39_STOMACH	0.01	0.02	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	METTL12--SLC3A2	1	1	METTL12	1638	chr11:62433418:+	SLC3A2	14032	chr11:62650380:+	ONLY_REF_SPLICE	YES	12	1121	0.14	0	0.0106	0.0106	METTL12->chr11:62432781-62435968:+,methyltransferase_like_12,SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2	KE39_STOMACH	0	0.14	0.0212	FALSE	0	0	0	2	0	FALSE	ACH-000507
KE39_STOMACH	NOTUM--SPTAN1	1	1	NOTUM	8387	chr17:79912132:-	SPTAN1	39907	chr9:131369883:+	ONLY_REF_SPLICE	YES	1596	331	0	0.01	0.0106	0.0106	NOTUM->NOTUM,_palmitoleoyl-protein_carboxylesterase,chr17:79910388-79919716:-,SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1	KE39_STOMACH	0	0.01	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	PPP2R2A--GNB2L1	1	1	PPP2R2A	3250	chr8:26151256:+	GNB2L1	27885	chr5:180669345:-	ONLY_REF_SPLICE	YES	104	4107	0.02	0	0.0106	0.0106	PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha,GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-	KE39_STOMACH	0	0.02	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	SEMA3B--MRPL52	1	1	SEMA3B	4818	chr3:50308911:+	MRPL52	17352	chr14:23303381:+	ONLY_REF_SPLICE	YES	544	301	0	0.01	0.0106	0.0106	SEMA3B->Oncogene{Bushman},chr3:50304990-50314977:+,semaphorin_3B,MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	KE39_STOMACH	0	0.01	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	SETD8--GNPDA1	1	1	SETD8	6645	chr12:123879813:+	GNPDA1	25192	chr5:141371485:-	ONLY_REF_SPLICE	YES	259	0	0.01	1	0.0106	0.0106	SETD8->chr12:123868320-123893905:+,GNPDA1->chr5:141371314-141392606:-,glucosamine-6-phosphate_deaminase_1	KE39_STOMACH	0.01	1	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	SFSWAP--NOC4L	1	1	SFSWAP	1367	chr12:132195992:+	NOC4L	35368	chr12:132635526:+	ONLY_REF_SPLICE	NO	224	72	0.01	0.03	0.0106	0.0106	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3]},SFSWAP->chr12:132195626-132284282:+,splicing_factor,_suppressor_of_white-apricot_homolog,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	KE39_STOMACH	0.01	0.03	0.0212	FALSE	2	5	0	2	0	FALSE	ACH-000507
KE39_STOMACH	SLC1A5--AP2S1	1	1	SLC1A5	6566	chr19:47281932:-	AP2S1	16256	chr19:47342877:-	ONLY_REF_SPLICE	YES	3246	1195	0	0	0.0106	0.0106	LOCAL_REARRANGEMENT:-:[49542],SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,AP2S1->adaptor_related_protein_complex_2_sigma_1_subunit,chr19:47341393-47354249:-	KE39_STOMACH	0	0	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	TAF1D--NPIPP1	1	1	TAF1D	6933	chr11:93470230:-	NPIPP1	31425	chr16:15198615:-	ONLY_REF_SPLICE	YES	584	31	0	0.06	0.0106	0.0106	TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-,NPIPP1->chr16:15198178-15225458:-,nuclear_pore_complex_interacting_protein_pseudogene_1	KE39_STOMACH	0	0.06	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000507
KE39_STOMACH	TEAD1--CTC-497E21.3	1	1	TEAD1	4496	chr11:12785981:+	CTC-497E21.3	30310	chr11:13022773:-	ONLY_REF_SPLICE	YES	49	0	0.04	1	0.0106	0.0106	LOCAL_INVERSION:+:-:[56339],TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,CTC-497E21.3->chr11:13022637-13030706:-	KE39_STOMACH	0.04	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000507
KE39_STOMACH	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0.0106	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KE39_STOMACH	1	1	0.0212	TRUE	62	24	1	171	0	FALSE	ACH-000507
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT1	170	57	KMT2A	16644	chr11:118353210:+	MLLT1	59761	chr19:6218052:-	ONLY_REF_SPLICE	YES	11	29	0.95	0.89	2.4838	0.8328	Cosmic{samples=667,mutations=86,papers=29},Mitelman{AL_bi=2,Skin=2,ALL=2,AML=12},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.95	3.3166	TRUE	0	0	0	1	0	TRUE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	81	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1835	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1835	TRUE	0	0	0	518	0	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT1--KMT2A	38	6	MLLT1	7274	chr19:6222132:-	KMT2A	31640	chr11:118354898:+	ONLY_REF_SPLICE	YES	23	10	0.66	0.81	0.5552	0.0877	MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	0.81	0.6429	TRUE	0	0	0	1	0	TRUE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	37	8	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5406	0.1169	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6575	TRUE	508	994	45	981	0	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	22	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	154	2	0.14	0.93	0.3214	0.0438	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.93	0.3652	TRUE	519	3926	326	965	0	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	19	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2776	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2776	FALSE	462	80	0	856	0	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	14	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2046	0.0438	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2484	TRUE	477	1352	189	275	0	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	10	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	76	13	0.2	0.59	0.1461	0.1315	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.59	0.2776	TRUE	267	562	48	632	0	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	6	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0877	0.0292	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1169	FALSE	416	2512	207	587	0	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	80	13	0.14	0.5	0.0438	0.1461	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.5	0.1899	TRUE	267	562	48	632	0	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0438	FALSE	462	80	0	856	0	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0438	FALSE	462	80	0	856	0	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	2	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0.0584	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0876	TRUE	160	277	29	98	0	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0438	TRUE	0	1	0	48	1	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YIPF6--BAZ1B	3	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0438	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0438	TRUE	1	23	1	24	8	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP68--BASP1	2	0	CEP68	1163	chr2:65283662:+	BASP1	22089	chr5:17275317:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	CEP68->centrosomal_protein_68,chr2:65283500-65314138:+,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPNE2--LAMTOR4	2	0	CPNE2	11789	chr16:57155672:+	LAMTOR4	26737	chr7:99747122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	CPNE2->chr16:57126449-57181878:+,copine_2,LAMTOR4->chr7:99746530-99753567:+,late_endosomal/lysosomal_adaptor,_MAPK_and_MTOR_activator_4	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0292	TRUE	0	9	0	44	1	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EVL--KDM1A	2	0	EVL	9362	chr14:100563995:+	KDM1A	34519	chr1:23356962:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+,KDM1A->chr1:23345941-23410182:+,lysine_demethylase_1A	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFC2--LAT2	2	0	RFC2	4007	chr7:73664069:-	LAT2	29722	chr7:73643274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_INVERSION:-:+:[1668],RFC2->chr7:73645829-73668774:-,replication_factor_C_subunit_2,LAT2->chr7:73613982-73644161:+,linker_for_activation_of_T-cells_family_member_2	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC019118.3--TSSC1	1	1	AC019118.3	1234	chr2:3149318:-	TSSC1	19669	chr2:3218019:-	ONLY_REF_SPLICE	YES	5	217	0.29	0.01	0.0146	0.0146	LOCAL_REARRANGEMENT:-:[43145],AC019118.3->chr2:3135353-3149551:-,TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.29	0.0292	FALSE	0	0	0	2	0	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTG1--RPS8	1	1	ACTG1	5248	chr17:79477953:-	RPS8	10629	chr1:45242347:+	ONLY_REF_SPLICE	YES	7903	2439	0	0	0.0146	0.0146	GTEx&tcga_normals:1/3694=0.03%,ACTG1->actin_gamma_1,chr17:79476997-79490873:-,RPS8->chr1:45240923-45244451:+,ribosomal_protein_S8	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0292	FALSE	0	0	0	1	0	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--CTBP1	1	1	UVSSA	8854	chr4:1360219:+	CTBP1	25235	chr4:1232125:-	ONLY_REF_SPLICE	YES	6	526	0.25	0	0.0146	0.0146	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.25	0.0292	FALSE	1	0	0	4	0	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	33	0	0.06	1	0.0146	0.0146	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0292	FALSE	272	151	14	158	0	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZCCHC7--PAX5	1	1	ZCCHC7	4831	chr9:37144994:+	PAX5	23214	chr9:37020798:-	ONLY_REF_SPLICE	YES	157	16	0.01	0.11	0.0146	0.0146	LOCAL_INVERSION:+:-:[86433],ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7,PAX5->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:36833272-37034103:-,paired_box_5	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.11	0.0292	FALSE	0	0	0	1	0	FALSE	ACH-001106
KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZCCHC7--PAX5	1	1	ZCCHC7	3765	chr9:37126939:+	PAX5	23214	chr9:37020798:-	ONLY_REF_SPLICE	NO	144	16	0.01	0.11	0.0146	0.0146	LOCAL_INVERSION:+:-:[86433],ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7,PAX5->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:36833272-37034103:-,paired_box_5	KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.11	0.0292	FALSE	0	0	0	1	0	FALSE	ACH-001106
SKUT1_SOFT_TISSUE	GATAD2A--MAU2	213	46	GATAD2A	9305	chr19:19576423:+	MAU2	45973	chr19:19465164:+	ONLY_REF_SPLICE	YES	223	38	0.54	0.87	1.9333	0.4175	LOCAL_REARRANGEMENT:+:[27072],GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,MAU2->MAU2_sister_chromatid_cohesion_factor,chr19:19431490-19469563:+	SKUT1_SOFT_TISSUE	0.54	0.87	2.3508	TRUE	0	0	0	1	0	TRUE	ACH-000939
SKUT1_SOFT_TISSUE	TIMM23B--LINC00843	128	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1618	0.2088	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKUT1_SOFT_TISSUE	1	1	1.3706	TRUE	508	994	45	981	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	TIMM23--RP11-464F9.1	84	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	275	4	0.24	0.96	0.7624	0.0091	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKUT1_SOFT_TISSUE	0.24	0.96	0.7715	TRUE	519	3926	326	965	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	ZNF654--HMGB2	70	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6353	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKUT1_SOFT_TISSUE	1	1	0.6353	TRUE	0	0	0	518	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-ND6--MT-TE	26	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.236	0.0272	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKUT1_SOFT_TISSUE	1	1	0.2632	FALSE	499	1288	110	792	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	C15orf57--CBX3	21	20	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	60	31	0.41	0.57	0.1906	0.1815	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKUT1_SOFT_TISSUE	0.41	0.57	0.3721	TRUE	267	562	48	632	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-TA--MT-TC	24	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2178	0.0454	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKUT1_SOFT_TISSUE	1	1	0.2632	FALSE	462	80	0	856	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	HSP90AB1--MT-RNR2	23	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3280	0	0.01	1	0.2088	0.0091	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKUT1_SOFT_TISSUE	0.01	1	0.2179	FALSE	13	9	0	364	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	RP1-34H18.1--NAV3	21	6	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	8	1	0.77	0.1906	0.0545	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SKUT1_SOFT_TISSUE	0.77	1	0.2451	TRUE	254	575	65	124	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	OR51S1--TP53I11	20	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1815	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SKUT1_SOFT_TISSUE	1	1	0.1815	TRUE	402	216	10	229	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	RP11-680G10.1--GSE1	17	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	19	1	0.54	0.1543	0.0454	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKUT1_SOFT_TISSUE	0.54	1	0.1997	TRUE	465	1949	224	605	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	RP11-680G10.1--GSE1	15	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.81	0.1361	0.0635	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKUT1_SOFT_TISSUE	0.81	1	0.1996	TRUE	458	1351	185	561	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-ND6--MT-TE	13	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.118	0.0272	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKUT1_SOFT_TISSUE	1	1	0.1452	FALSE	499	1288	110	792	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.118	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKUT1_SOFT_TISSUE	1	1	0.118	TRUE	0	0	0	434	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-ND6--MT-TE	8	18	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0726	0.1634	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKUT1_SOFT_TISSUE	1	1	0.236	FALSE	499	1288	110	792	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-ND6--MT-TE	9	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0817	0.1271	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKUT1_SOFT_TISSUE	1	1	0.2088	FALSE	499	1288	110	792	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-CO3--MT-ATP6	4	30	MT-CO3	1159	chrM:9365:+	MT-ATP6	4932	chrM:8674:+	INCL_NON_REF_SPLICE	YES	5	13	0.87	0.72	0.0363	0.2723	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKUT1_SOFT_TISSUE	0.72	0.87	0.3086	FALSE	189	492	56	216	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-ND1--MT-RNR2	10	5	MT-ND1	1291	chrM:3597:+	MT-RNR2	5713	chrM:2427:+	INCL_NON_REF_SPLICE	YES	3	6398	0.83	0	0.0908	0.0454	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKUT1_SOFT_TISSUE	0	0.83	0.1362	FALSE	120	26	5	87	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	11	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0998	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKUT1_SOFT_TISSUE	1	1	0.0998	FALSE	515	4851	409	746	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	CALM3--MT-ND4L	9	7	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2051	0	0.01	1	0.0817	0.0635	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKUT1_SOFT_TISSUE	0.01	1	0.1452	FALSE	1	1	0	107	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	KEAP1--SLC44A2	10	0	KEAP1	2045	chr19:10613373:-	SLC44A2	14643	chr19:10736929:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0908	0	LOCAL_INVERSION:-:+:[98716],KEAP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:10596796-10614417:-,kelch_like_ECH_associated_protein_1,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	SKUT1_SOFT_TISSUE	1	1	0.0908	TRUE	0	0	0	1	0	TRUE	ACH-000939
SKUT1_SOFT_TISSUE	RP1-34H18.1--RP11-781A6.1	9	3	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0817	0.0272	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	SKUT1_SOFT_TISSUE	1	1	0.1089	TRUE	94	160	11	37	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-CO3--MT-ATP6	9	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.69	1	0.0817	0.0182	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKUT1_SOFT_TISSUE	0.69	1	0.0999	FALSE	189	492	56	216	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-ND6--MT-TE	4	22	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0.1997	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKUT1_SOFT_TISSUE	1	1	0.236	FALSE	499	1288	110	792	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-TA--MT-TC	8	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0726	0.0363	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKUT1_SOFT_TISSUE	1	1	0.1089	FALSE	462	80	0	856	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-CO3--MT-ATP6	3	21	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	1	1	0.96	0.96	0.0272	0.1906	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKUT1_SOFT_TISSUE	0.96	0.96	0.2178	FALSE	189	492	56	216	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	KEAP1--SLC44A2	8	0	KEAP1	1501	chr19:10613917:-	SLC44A2	14643	chr19:10736929:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0726	0	LOCAL_INVERSION:-:+:[98716],KEAP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:10596796-10614417:-,kelch_like_ECH_associated_protein_1,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	SKUT1_SOFT_TISSUE	1	1	0.0726	TRUE	0	0	0	1	0	TRUE	ACH-000939
SKUT1_SOFT_TISSUE	SLC1A5--MT-ND4L	7	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0635	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKUT1_SOFT_TISSUE	1	1	0.0635	FALSE	0	0	0	189	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	C15orf57--CBX3	4	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	59	34	0.2	0.31	0.0363	0.0998	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKUT1_SOFT_TISSUE	0.2	0.31	0.1361	TRUE	267	562	48	632	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	TBCD--FN3K	6	3	TBCD	2365	chr17:80714091:+	FN3K	57549	chr17:80696365:+	ONLY_REF_SPLICE	YES	73	32	0.11	0.22	0.0545	0.0272	LOCAL_REARRANGEMENT:+:[867],TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D,FN3K->chr17:80693451-80709073:+,fructosamine_3_kinase	SKUT1_SOFT_TISSUE	0.11	0.22	0.0817	TRUE	0	0	0	1	0	TRUE	ACH-000939
SKUT1_SOFT_TISSUE	VIM--TMSB4X	6	2	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	4410	107	0	0.07	0.0545	0.0182	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SKUT1_SOFT_TISSUE	0	0.07	0.0727	FALSE	0	0	0	15	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	C15orf57--CBX3	3	11	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	59	34	0.19	0.29	0.0272	0.0998	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKUT1_SOFT_TISSUE	0.19	0.29	0.127	TRUE	267	562	48	632	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-ND6--MT-TE	3	9	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0.0817	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKUT1_SOFT_TISSUE	1	1	0.1089	FALSE	499	1288	110	792	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0454	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKUT1_SOFT_TISSUE	1	1	0.0454	TRUE	0	0	0	518	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-ND1--MT-RNR2	3	7	MT-ND1	1485	chrM:3791:+	MT-RNR2	4979	chrM:1693:+	INCL_NON_REF_SPLICE	YES	38	0	0.21	1	0.0272	0.0635	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKUT1_SOFT_TISSUE	0.21	1	0.0907	FALSE	114	26	4	85	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-ND1--MT-RNR2	3	5	MT-ND1	1272	chrM:3578:+	MT-RNR2	5546	chrM:2260:+	INCL_NON_REF_SPLICE	YES	2	5705	0.8	0	0.0272	0.0454	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKUT1_SOFT_TISSUE	0	0.8	0.0726	FALSE	120	26	5	87	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKUT1_SOFT_TISSUE	1	1	0.0363	FALSE	189	492	56	216	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKUT1_SOFT_TISSUE	1	1	0.0363	FALSE	189	492	56	216	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKUT1_SOFT_TISSUE	1	1	0.0363	FALSE	499	1288	110	792	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKUT1_SOFT_TISSUE	1	1	0.0363	FALSE	462	80	0	856	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0.0272	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKUT1_SOFT_TISSUE	1	1	0.0544	FALSE	462	80	0	856	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3292	0	0	1	0.0272	0.0091	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKUT1_SOFT_TISSUE	0	1	0.0363	FALSE	13	9	0	364	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	C20orf27--MT-ND4L	3	0	C20orf27	7217	chr20:3734540:-	MT-ND4L	10604	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	C20orf27->chr20:3734155-3749034:-,chromosome_20_open_reading_frame_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKUT1_SOFT_TISSUE	1	1	0.0272	FALSE	0	0	0	6	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKUT1_SOFT_TISSUE	1	1	0.0272	FALSE	189	492	56	216	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKUT1_SOFT_TISSUE	1	1	0.0272	TRUE	0	0	0	434	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKUT1_SOFT_TISSUE	1	1	0.0272	TRUE	0	0	0	434	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKUT1_SOFT_TISSUE	1	1	0.0272	TRUE	0	0	0	434	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	3	0	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKUT1_SOFT_TISSUE	1	1	0.0272	FALSE	467	2173	244	435	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	TBCD--FN3K	2	2	TBCD	1314	chr17:80710253:+	FN3K	57549	chr17:80696365:+	ONLY_REF_SPLICE	NO	54	32	0.07	0.11	0.0182	0.0182	LOCAL_REARRANGEMENT:+:[867],TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D,FN3K->chr17:80693451-80709073:+,fructosamine_3_kinase	SKUT1_SOFT_TISSUE	0.07	0.11	0.0364	TRUE	0	0	0	1	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	EPC2--MBD5	2	1	EPC2	11161	chr2:149522715:+	MBD5	37063	chr2:149225910:+	ONLY_REF_SPLICE	NO	32	5	0.09	0.38	0.0182	0.0091	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},EPC2->chr2:149402009-149545130:+,enhancer_of_polycomb_homolog_2,MBD5->chr2:148778580-149275805:+,methyl-CpG_binding_domain_protein_5	SKUT1_SOFT_TISSUE	0.09	0.38	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000939
SKUT1_SOFT_TISSUE	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKUT1_SOFT_TISSUE	1	1	0.0182	FALSE	16	356	14	466	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SKUT1_SOFT_TISSUE	1	1	0.0182	TRUE	53	396	64	110	0	FALSE	ACH-000939
SKUT1_SOFT_TISSUE	SPSB3--CLCN7	2	0	SPSB3	3527	chr16:1831359:-	CLCN7	15768	chr16:1511675:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	SPSB3->chr16:1826713-1843701:-,splA/ryanodine_receptor_domain_and_SOCS_box_containing_3,CLCN7->chloride_voltage-gated_channel_7,chr16:1494935-1525581:-	SKUT1_SOFT_TISSUE	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000939
SKUT1_SOFT_TISSUE	B4GALT1--P4HA1	1	1	B4GALT1	2835	chr9:33135187:-	P4HA1	26715	chr10:74803715:-	ONLY_REF_SPLICE	NO	78	213	0.03	0.01	0.0091	0.0091	B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,P4HA1->chr10:74766975-74856732:-,prolyl_4-hydroxylase_subunit_alpha_1	SKUT1_SOFT_TISSUE	0.01	0.03	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000939
COLO201_LARGE_INTESTINE	LONP1--HLA-DRB1	213	44	LONP1	4989	chr19:5714194:-	HLA-DRB1	22662	chr6:32557520:-	INCL_NON_REF_SPLICE	YES	56	0	0.82	1	2.074	0.4284	LONP1->chr19:5691845-5720583:-,lon_peptidase_1,_mitochondrial,HLA-DRB1->chr6:32546546-32557625:-,major_histocompatibility_complex,_class_II,_DR_beta_1	COLO201_LARGE_INTESTINE	0.82	1	2.5024	FALSE	0	0	0	1	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	TIMM23B--LINC00843	117	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1392	0.2532	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COLO201_LARGE_INTESTINE	1	1	1.3924	TRUE	508	994	45	981	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	TIMM23--RP11-464F9.1	65	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	159	5	0.3	0.93	0.6329	0.0292	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	COLO201_LARGE_INTESTINE	0.3	0.93	0.6621	TRUE	519	3926	326	965	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	55	16	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5355	0.1558	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	COLO201_LARGE_INTESTINE	1	1	0.6913	FALSE	81	155	12	160	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	MT-ND6--MT-TE	35	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3408	0.0195	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO201_LARGE_INTESTINE	1	1	0.3603	FALSE	499	1288	110	792	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	MT-TA--MT-TC	34	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3311	0.0292	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO201_LARGE_INTESTINE	1	1	0.3603	FALSE	462	80	0	856	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	ZNF654--HMGB2	31	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3018	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	COLO201_LARGE_INTESTINE	1	1	0.3018	TRUE	0	0	0	518	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	SLC1A5--MT-ND4L	24	3	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1725	0	0.02	1	0.2337	0.0292	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO201_LARGE_INTESTINE	0.02	1	0.2629	FALSE	0	0	0	189	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	CCT6A--MRPS17	17	9	CCT6A	7430	chr7:56127333:+	MRPS17	16184	chr7:55973946:+	ONLY_REF_SPLICE	YES	455	1	0.05	0.96	0.1655	0.0876	LOCAL_INVERSION:+:+,chr7:[96391],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,MRPS17->chr7:55954970-56022932:+,chr7:56019512-56024192:+,mitochondrial_ribosomal_protein_S17	COLO201_LARGE_INTESTINE	0.05	0.96	0.2531	TRUE	0	0	0	1	0	TRUE	ACH-000253
COLO201_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	11	9	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1071	0.0876	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	COLO201_LARGE_INTESTINE	1	1	0.1947	FALSE	81	155	12	160	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	SLC1A5--MT-ND4L	10	7	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1736	0	0.01	1	0.0974	0.0682	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO201_LARGE_INTESTINE	0.01	1	0.1656	FALSE	0	0	0	189	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	C15orf57--CBX3	9	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	29	54	0.36	0.23	0.0876	0.0682	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COLO201_LARGE_INTESTINE	0.23	0.36	0.1558	TRUE	267	562	48	632	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	MT-ND6--MT-TE	8	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.0779	0.0974	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO201_LARGE_INTESTINE	0.86	1	0.1753	FALSE	499	1288	110	792	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	BOP1--TONSL	10	1	BOP1	2339	chr8:145512776:-	TONSL	19089	chr8:145664118:-	ONLY_REF_SPLICE	YES	59	21	0.16	0.34	0.0974	0.0097	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,TONSL->chr8:145654165-145669827:-,tonsoku-like,_DNA_repair_protein	COLO201_LARGE_INTESTINE	0.16	0.34	0.1071	TRUE	0	0	0	1	0	TRUE	ACH-000253
COLO201_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	9	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.93	0.93	0.0876	0.0389	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO201_LARGE_INTESTINE	0.93	0.93	0.1265	FALSE	515	4851	409	746	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	MT-TA--MT-TC	8	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0779	0.0292	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO201_LARGE_INTESTINE	1	1	0.1071	FALSE	462	80	0	856	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	ACTR3C--RP11-728K20.1	8	2	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	11	0	0.48	1	0.0779	0.0195	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	COLO201_LARGE_INTESTINE	0.48	1	0.0974	TRUE	0	5	0	16	1	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	MT-ND6--MT-TE	6	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0584	0.0292	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO201_LARGE_INTESTINE	1	1	0.0876	FALSE	499	1288	110	792	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	MT-ND6--MT-TE	3	15	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0.1461	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO201_LARGE_INTESTINE	1	1	0.1753	FALSE	499	1288	110	792	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	MT-ND6--MT-TE	3	12	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0292	0.1168	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO201_LARGE_INTESTINE	0.88	1	0.146	FALSE	499	1288	110	792	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0584	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO201_LARGE_INTESTINE	1	1	0.0584	FALSE	462	80	0	856	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	1	16	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0097	0.1558	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	COLO201_LARGE_INTESTINE	1	1	0.1655	FALSE	5	9	0	20	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	RP11-123O10.4--GRIP1	5	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0487	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO201_LARGE_INTESTINE	1	1	0.0487	FALSE	416	2512	207	587	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	ZFHX3--C16orf47	4	3	ZFHX3	3793	chr16:73081651:-	C16orf47	31247	chr16:73177730:-	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0389	0.0292	LOCAL_REARRANGEMENT:-:[66939],ZFHX3->Oncogene{Bushman},chr16:72816784-73093597:-,zinc_finger_homeobox_3,C16orf47->chr16:73160536-73178346:-,chromosome_16_open_reading_frame_47	COLO201_LARGE_INTESTINE	0.64	1	0.0681	TRUE	0	1	0	1	1	TRUE	ACH-000253
COLO201_LARGE_INTESTINE	NUBPL--CTD-2213F21.2	4	1	NUBPL	8237	chr14:32034254:+	CTD-2213F21.2	31292	chr14:31891054:+	ONLY_REF_SPLICE	YES	19	2	0.21	0.71	0.0389	0.0097	LOCAL_REARRANGEMENT:+:[37073],NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like,CTD-2213F21.2->chr14:31889492-31922089:+	COLO201_LARGE_INTESTINE	0.21	0.71	0.0486	TRUE	0	2	0	1	2	TRUE	ACH-000253
COLO201_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0292	0.0487	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO201_LARGE_INTESTINE	0.89	1	0.0779	FALSE	407	2205	196	549	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	ACTR3C--RP11-728K20.1	4	0	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	19906	chr7:149588390:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0389	0	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	COLO201_LARGE_INTESTINE	1	1	0.0389	TRUE	3	46	4	12	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO201_LARGE_INTESTINE	1	1	0.0389	FALSE	13	9	0	364	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO201_LARGE_INTESTINE	1	1	0.0389	FALSE	499	1288	110	792	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO201_LARGE_INTESTINE	1	1	0.0389	FALSE	499	1288	110	792	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0.0389	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO201_LARGE_INTESTINE	1	1	0.0681	FALSE	462	80	0	856	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	2	8	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	0	7	1	0.59	0.0195	0.0779	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	COLO201_LARGE_INTESTINE	0.59	1	0.0974	FALSE	81	155	12	160	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	ADAP1--C7orf50	3	1	ADAP1	9672	chr7:959605:-	C7orf50	29696	chr7:1049779:-	ONLY_REF_SPLICE	YES	238	183	0.02	0.02	0.0292	0.0097	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_REARRANGEMENT:-:[41579],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	COLO201_LARGE_INTESTINE	0.02	0.02	0.0389	TRUE	0	6	0	10	1	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1034	0	0	1	0.0292	0.0097	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO201_LARGE_INTESTINE	0	1	0.0389	FALSE	13	9	0	364	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	MT-ND6--MT-TE	3	1	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0.0097	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO201_LARGE_INTESTINE	1	1	0.0389	FALSE	499	1288	110	792	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	PHLDA1--S100A6	3	0	PHLDA1	4109	chr12:76424604:-	S100A6	12740	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	PHLDA1->chr12:76419227-76427712:-,pleckstrin_homology_like_domain_family_A_member_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	COLO201_LARGE_INTESTINE	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000253
COLO201_LARGE_INTESTINE	ZNF654--HMGB2	3	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	COLO201_LARGE_INTESTINE	1	1	0.0292	TRUE	0	0	0	518	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	YWHAE--CRK	2	3	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	1437	107	0	0.04	0.0195	0.0292	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	COLO201_LARGE_INTESTINE	0	0.04	0.0487	FALSE	6	50	7	115	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	56	0.75	0.05	0.0195	0.0097	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	COLO201_LARGE_INTESTINE	0.05	0.75	0.0292	FALSE	16	356	14	466	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0097	0.0487	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO201_LARGE_INTESTINE	1	1	0.0584	FALSE	192	492	57	212	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	PRDM10--APLP2	2	0	PRDM10	1114	chr11:129872617:-	APLP2	37010	chr11:129979324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	LOCAL_INVERSION:-:+:[67002],PRDM10->PR_domain_10,chr11:129769601-129872730:-,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	COLO201_LARGE_INTESTINE	1	1	0.0195	TRUE	0	0	0	2	0	TRUE	ACH-000253
COLO201_LARGE_INTESTINE	RP11-114H23.1--NAP1L1	2	0	RP11-114H23.1	1295	chr12:76377501:-	NAP1L1	16443	chr12:76461253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	LOCAL_REARRANGEMENT:-:[60875],RP11-114H23.1->chr12:75956982-76377795:-,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	COLO201_LARGE_INTESTINE	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000253
COLO201_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	1	1	0.83	0.0097	0.0389	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO201_LARGE_INTESTINE	0.83	1	0.0486	FALSE	467	2173	244	435	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	TIMM23--RP11-464F9.1	2	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	26959	chr10:75454562:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	COLO201_LARGE_INTESTINE	1	1	0.0195	TRUE	1	3	0	8	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	XKR9--RP11-326E22.1	2	0	XKR9	8344	chr8:71619388:+	RP11-326E22.1	21087	chr8:72111375:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	GTEx_FI:{Brain=[count:4=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Liver=[count:1=pct:0.8]},XKR9->XK_related_9,chr8:71581600-71702606:+,RP11-326E22.1->chr8:72067692-72116458:+	COLO201_LARGE_INTESTINE	1	1	0.0195	TRUE	5	29	0	13	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	DSTYK--HLA-G	1	1	DSTYK	1329	chr1:205180399:-	HLA-G	22732	chr6:29795613:+	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0097	0.0097	DSTYK->chr1:205111632-205180727:-,dual_serine/threonine_and_tyrosine_protein_kinase,HLA-G->chr6:29794744-29798902:+,major_histocompatibility_complex,_class_I,_G	COLO201_LARGE_INTESTINE	0.33	1	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	GGACT--PCCA	1	1	GGACT	3102	chr13:101236079:-	PCCA	40151	chr13:101179929:+	ONLY_REF_SPLICE	YES	22	56	0.08	0.03	0.0097	0.0097	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	COLO201_LARGE_INTESTINE	0.03	0.08	0.0194	TRUE	7	15	0	10	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	NBR2--BRCA1	1	1	NBR2	1161	chr17:41277787:+	BRCA1	18089	chr17:41258550:-	ONLY_REF_SPLICE	YES	20	34	0.09	0.06	0.0097	0.0097	LOCAL_INVERSION:+:-:[127],NBR2->chr17:41277627-41305688:+,neighbor_of_BRCA1_gene_2_(non-protein_coding),BRCA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_1,chr17:41196312-41277500:-	COLO201_LARGE_INTESTINE	0.06	0.09	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	POLE4--RP11-355F16.1	1	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	172	0	0.01	1	0.0097	0.0097	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	COLO201_LARGE_INTESTINE	0.01	1	0.0194	FALSE	5	7	0	37	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	RP11-112L6.4--MYO15B	1	1	RP11-112L6.4	1468	chr20:48789554:+	MYO15B	22869	chr17:73607682:+	ONLY_REF_SPLICE	YES	2	36	0.5	0.05	0.0097	0.0097	RP11-112L6.4->chr20:48789087-48793096:+,MYO15B->chr17:73584139-73622929:+,myosin_XVB	COLO201_LARGE_INTESTINE	0.05	0.5	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000253
COLO201_LARGE_INTESTINE	RPS6KA3--CXorf23	1	1	RPS6KA3	11697	chrX:20211605:-	CXorf23	38149	chrX:19973684:-	ONLY_REF_SPLICE	YES	78	22	0.03	0.08	0.0097	0.0097	RPS6KA3->chrX:20168029-20285523:-,ribosomal_protein_S6_kinase_A3,CXorf23->chrX:19930978-19988416:-,chromosome_X_open_reading_frame_23	COLO201_LARGE_INTESTINE	0.03	0.08	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000253
COLO201_LARGE_INTESTINE	ZNF433--INSR	1	1	ZNF433	1205	chr19:12146352:-	INSR	13214	chr19:7267907:-	ONLY_REF_SPLICE	YES	11	0	0.15	1	0.0097	0.0097	ZNF433->chr19:12125547-12146556:-,zinc_finger_protein_433,INSR->chr19:7112266-7294045:-,insulin_receptor	COLO201_LARGE_INTESTINE	0.15	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000253
SW620_LARGE_INTESTINE	NSD1--ZNF346	137	118	NSD1	4006	chr5:176563031:+	ZNF346	52011	chr5:176491513:+	ONLY_REF_SPLICE	YES	59	37	0.81	0.87	1.5604	1.344	YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],LOCAL_REARRANGEMENT:+:[51836],NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346	SW620_LARGE_INTESTINE	0.81	0.87	2.9044	TRUE	0	0	0	2	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	TIMM23B--LINC00843	140	56	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.5945	0.6378	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SW620_LARGE_INTESTINE	0.99	1	2.2323	TRUE	508	994	45	981	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	KANSL1--ARL17B	103	52	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	43	126	0.78	0.55	1.1731	0.5923	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SW620_LARGE_INTESTINE	0.55	0.78	1.7654	TRUE	181	1564	124	196	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	TIMM23--RP11-464F9.1	84	10	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	570	8	0.14	0.92	0.9567	0.1139	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SW620_LARGE_INTESTINE	0.14	0.92	1.0706	TRUE	519	3926	326	965	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	AKAP13--PDE8A	50	101	AKAP13	1228	chr15:85924029:+	PDE8A	69389	chr15:85607601:+	ONLY_REF_SPLICE	YES	10	23	0.94	0.87	0.5695	1.1504	{Klijn_CCL:Breast=1},AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	SW620_LARGE_INTESTINE	0.87	0.94	1.7199	TRUE	0	1	0	2	1	TRUE	ACH-000651
SW620_LARGE_INTESTINE	ZNF654--HMGB2	48	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5467	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SW620_LARGE_INTESTINE	1	1	0.5467	TRUE	0	0	0	518	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	ARNTL2--RP11-59N23.3	39	15	ARNTL2	15041	chr12:27556474:+	RP11-59N23.3	25602	chr12:21912848:+	ONLY_REF_SPLICE	YES	104	0	0.34	1	0.4442	0.1708	ARNTL2->aryl_hydrocarbon_receptor_nuclear_translocator_like_2,chr12:27485787-27576241:+,RP11-59N23.3->chr12:21815247-21912966:+	SW620_LARGE_INTESTINE	0.34	1	0.615	TRUE	0	0	0	2	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	MT-TA--MT-TC	29	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3303	0.0456	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW620_LARGE_INTESTINE	1	1	0.3759	FALSE	462	80	0	856	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	96	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	60	0	0.62	1	0.0456	1.0934	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW620_LARGE_INTESTINE	0.62	1	1.139	FALSE	344	827	44	306	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	97	MT-ND4	1459	chrM:11218:+	MT-ND4L	5475	chrM:10566:+	INCL_NON_REF_SPLICE	YES	760	0	0.12	1	0.0342	1.1048	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW620_LARGE_INTESTINE	0.12	1	1.139	FALSE	344	827	44	306	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	54	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	0	0.91	1	0.0797	0.615	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW620_LARGE_INTESTINE	0.91	1	0.6947	FALSE	344	821	44	306	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	C15orf57--CBX3	13	24	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	72	83	0.34	0.31	0.1481	0.2734	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SW620_LARGE_INTESTINE	0.31	0.34	0.4215	TRUE	267	562	48	632	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	C15orf57--CBX3	14	16	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	72	85	0.29	0.26	0.1595	0.1822	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SW620_LARGE_INTESTINE	0.26	0.29	0.3417	TRUE	267	562	48	632	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	HSPBP1--GRK5	15	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1708	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SW620_LARGE_INTESTINE	1	1	0.1708	TRUE	1	39	0	134	39	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ATP6--MT-CO1	14	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	10497	24803	0	0	0.1595	0.0114	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW620_LARGE_INTESTINE	0	0	0.1709	FALSE	183	104	9	328	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	NSD1--ZNF346	1	53	NSD1	3176	chr5:176562201:+	ZNF346	52011	chr5:176491513:+	ONLY_REF_SPLICE	YES	83	37	0.39	0.59	0.0114	0.6037	YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],LOCAL_REARRANGEMENT:+:[51836],NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346	SW620_LARGE_INTESTINE	0.39	0.59	0.6151	TRUE	0	0	0	2	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ND4L	10	16	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1379	1	0.02	0.96	0.1139	0.1822	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW620_LARGE_INTESTINE	0.02	0.96	0.2961	FALSE	344	827	44	306	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	NPM1P24--SET	13	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	58	2551	0.19	0.01	0.1481	0.0114	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SW620_LARGE_INTESTINE	0.01	0.19	0.1595	TRUE	0	0	0	434	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	SLC1A5--MT-ND4L	11	4	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2100	0	0.01	1	0.1253	0.0456	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW620_LARGE_INTESTINE	0.01	1	0.1709	FALSE	0	0	0	189	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-CO3--MT-ATP8	10	2	MT-CO3	1411	chrM:9617:+	MT-ATP8	4887	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16837	0	0	1	0.1139	0.0228	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	0	1	0.1367	FALSE	16	100	1	11	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ATP6--MT-CO1	10	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10694	25694	0	0	0.1139	0.0114	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW620_LARGE_INTESTINE	0	0	0.1253	FALSE	183	104	9	328	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ATP6--MT-CO2	8	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	43	1	0.23	0.93	0.0911	0.0569	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SW620_LARGE_INTESTINE	0.23	0.93	0.148	FALSE	59	21	0	114	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	KANSL1--ARL17B	3	21	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	58	126	0.29	0.16	0.0342	0.2392	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SW620_LARGE_INTESTINE	0.16	0.29	0.2734	TRUE	105	90	7	93	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	11052	8	0	0.53	0.0911	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	0	0.53	0.1025	FALSE	230	193	14	283	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	AC104389.28--HBG1	8	0	AC104389.28	1084	chr11:5526799:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0911	0	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	SW620_LARGE_INTESTINE	1	1	0.0911	FALSE	0	1	0	13	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	16	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	870	1	0.02	0.95	0.0456	0.1822	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW620_LARGE_INTESTINE	0.02	0.95	0.2278	FALSE	344	827	44	306	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	15	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	60	1	0.24	0.95	0.0456	0.1708	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW620_LARGE_INTESTINE	0.24	0.95	0.2164	FALSE	344	826	44	306	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND6--MT-TE	7	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0797	0.0342	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW620_LARGE_INTESTINE	1	1	0.1139	FALSE	499	1288	110	792	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	7	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0797	0.0342	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SW620_LARGE_INTESTINE	1	1	0.1139	FALSE	81	155	12	160	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	6	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2116	78	0.01	0.13	0.0683	0.0683	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	0.01	0.13	0.1366	FALSE	216	209	16	281	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND6--MT-TE	4	14	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0.1595	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW620_LARGE_INTESTINE	1	1	0.2051	FALSE	499	1288	110	792	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	PCBP2--MTND2P28	6	6	PCBP2	11835	chr12:53856343:+	MTND2P28	25766	chr1:565066:+	INCL_NON_REF_SPLICE	YES	3134	0	0	1	0.0683	0.0683	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SW620_LARGE_INTESTINE	0	1	0.1366	TRUE	0	0	0	9	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	HSPBP1--GRK5	7	0	HSPBP1	1855	chr19:55790895:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0797	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SW620_LARGE_INTESTINE	1	1	0.0797	TRUE	1	39	0	134	39	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ATP6--MT-CO2	6	4	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	45	0	0.18	1	0.0683	0.0456	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SW620_LARGE_INTESTINE	0.18	1	0.1139	FALSE	59	21	0	114	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	16	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6354	1	0	0.95	0.0342	0.1822	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW620_LARGE_INTESTINE	0	0.95	0.2164	FALSE	344	827	44	306	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	HSPBP1--GRK5	6	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0683	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SW620_LARGE_INTESTINE	1	1	0.0683	TRUE	1	39	0	134	39	FALSE	ACH-000651
SW620_LARGE_INTESTINE	CPSF6--C9orf3	5	3	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	336	368	0.02	0.02	0.0569	0.0342	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SW620_LARGE_INTESTINE	0.02	0.02	0.0911	TRUE	53	99	2	44	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ATP6--MT-CO2	4	7	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	43	0	0.2	1	0.0456	0.0797	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SW620_LARGE_INTESTINE	0.2	1	0.1253	FALSE	59	21	0	114	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	YWHAE--CRK	5	3	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	4767	176	0	0.04	0.0569	0.0342	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SW620_LARGE_INTESTINE	0	0.04	0.0911	FALSE	6	50	7	115	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	LIMK2--DEPDC5	3	10	LIMK2	2286	chr22:31621805:+	DEPDC5	24213	chr22:32150848:+	ONLY_REF_SPLICE	YES	38	17	0.25	0.43	0.0342	0.1139	LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+,DEPDC5->DEP_domain_containing_5,chr22:32149944-32303012:+	SW620_LARGE_INTESTINE	0.25	0.43	0.1481	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	10	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	4004	0	0	1	0.0342	0.1139	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	0	1	0.1481	FALSE	222	212	16	282	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ATP6--MT-CO1	5	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10715	25309	0	0	0.0569	0.0114	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW620_LARGE_INTESTINE	0	0	0.0683	FALSE	183	104	9	328	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11191	12	0	0.33	0.0569	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	0	0.33	0.0683	FALSE	230	198	14	283	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	5	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	14709	0	0	1	0.0456	0.0569	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	0	1	0.1025	FALSE	231	217	16	283	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	CDH13--RP11-22H5.2	5	0	CDH13	1335	chr16:82660742:+	RP11-22H5.2	37471	chr16:82856817:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0569	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	SW620_LARGE_INTESTINE	1	1	0.0569	FALSE	0	1	0	7	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	HSPBP1--GRK5	5	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0569	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SW620_LARGE_INTESTINE	1	1	0.0569	TRUE	1	39	0	134	39	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MAEA--CTBP1	5	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0569	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SW620_LARGE_INTESTINE	1	1	0.0569	TRUE	3	14	2	43	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	7	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	44	0	0.19	1	0.0342	0.0797	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SW620_LARGE_INTESTINE	0.19	1	0.1139	FALSE	59	21	0	114	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	3	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	18081	765	0	0.01	0.0456	0.0342	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	0	0.01	0.0798	FALSE	231	217	16	283	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	7	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	161	0	0.06	1	0.0342	0.0797	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW620_LARGE_INTESTINE	0.06	1	0.1139	FALSE	344	827	44	306	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	LIMK2--DEPDC5	3	6	LIMK2	1186	chr22:31608410:+	DEPDC5	24213	chr22:32150848:+	ONLY_REF_SPLICE	YES	38	17	0.19	0.35	0.0342	0.0683	LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+,DEPDC5->DEP_domain_containing_5,chr22:32149944-32303012:+	SW620_LARGE_INTESTINE	0.19	0.35	0.1025	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	6	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	16428	0	0	1	0.0342	0.0683	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	0	1	0.1025	FALSE	231	217	16	283	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	2	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	16457	1569	0	0	0.0456	0.0228	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	0	0	0.0684	FALSE	231	205	14	283	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-TA--MT-TC	4	2	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0.0228	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW620_LARGE_INTESTINE	1	1	0.0684	FALSE	462	80	0	856	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	5	MT-ND4	1503	chrM:11262:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	16636	0	0	1	0.0342	0.0569	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	0	1	0.0911	FALSE	231	217	16	283	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	5	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	16941	0	0	1	0.0342	0.0569	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	0	1	0.0911	FALSE	231	217	16	283	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	1	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	13015	1867	0	0	0.0456	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	0	0	0.057	FALSE	231	205	14	283	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	AC104389.28--HBG1	3	4	AC104389.28	3440	chr11:5367003:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	29	5	0.19	0.58	0.0342	0.0456	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	SW620_LARGE_INTESTINE	0.19	0.58	0.0798	FALSE	0	0	0	7	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	NCL--HNRNPA2B1	4	0	NCL	6884	chr2:232325380:-	HNRNPA2B1	23855	chr7:26233274:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	HGNC_GENEFAM,NCL->chr2:232318242-232348352:-,nucleolin,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1	SW620_LARGE_INTESTINE	1	1	0.0456	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	LIMK2--DEPDC5	2	7	LIMK2	2286	chr22:31621805:+	DEPDC5	25882	chr22:32154532:+	ONLY_REF_SPLICE	YES	38	36	0.19	0.2	0.0228	0.0797	LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+,DEPDC5->DEP_domain_containing_5,chr22:32149944-32303012:+	SW620_LARGE_INTESTINE	0.19	0.2	0.1025	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14971	12	0	0.33	0.0342	0.0342	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	0	0.33	0.0684	FALSE	231	217	16	283	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17141	78	0	0.07	0.0342	0.0342	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	0	0.07	0.0684	FALSE	231	217	16	283	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	2	MT-ND4	1201	chrM:10960:+	MT-ATP8	5438	chrM:8425:+	INCL_NON_REF_SPLICE	NO	10768	0	0	1	0.0342	0.0228	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	0	1	0.057	FALSE	230	193	14	283	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	ACTR3C--RP11-728K20.1	3	1	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	35	0	0.1	1	0.0342	0.0114	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	SW620_LARGE_INTESTINE	0.1	1	0.0456	TRUE	0	5	0	16	1	TRUE	ACH-000651
SW620_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	12919	22789	0	0	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW620_LARGE_INTESTINE	0	0	0.0456	FALSE	183	104	9	328	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	12262	23020	0	0	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW620_LARGE_INTESTINE	0	0	0.0456	FALSE	183	104	9	328	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	10715	22068	0	0	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW620_LARGE_INTESTINE	0	0	0.0456	FALSE	183	104	9	328	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-CO3--MT-ATP8	3	1	MT-CO3	1123	chrM:9329:+	MT-ATP8	4843	chrM:8424:+	INCL_NON_REF_SPLICE	YES	3114	0	0	1	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	0	1	0.0456	FALSE	16	100	1	11	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13276	12	0	0.25	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	0	0.25	0.0456	FALSE	231	205	14	283	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	RP11-353N4.6--SEC22B	3	1	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	248	381	0.02	0.01	0.0342	0.0114	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SW620_LARGE_INTESTINE	0.01	0.02	0.0456	FALSE	49	42	7	43	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	CDH13--RP11-22H5.2	3	0	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	SW620_LARGE_INTESTINE	1	1	0.0342	FALSE	14	31	0	36	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-CO1--SUMO2	3	0	MT-CO1	1612	chrM:6515:+	SUMO2	5590	chr17:73179031:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	SW620_LARGE_INTESTINE	1	1	0.0342	FALSE	0	0	0	12	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	MT-CO3--MT-ATP8	3	0	MT-CO3	1083	chrM:9289:+	MT-ATP8	4826	chrM:8407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW620_LARGE_INTESTINE	1	1	0.0342	FALSE	16	100	1	11	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	POLE4--RP11-355F16.1	3	0	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	SW620_LARGE_INTESTINE	1	1	0.0342	TRUE	5	7	0	37	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	RP11-319G9.5--WWOX	3	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	SW620_LARGE_INTESTINE	1	1	0.0342	FALSE	154	425	28	76	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	RP11-353N4.6--SEC22B	2	1	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	248	387	0.01	0.01	0.0228	0.0114	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SW620_LARGE_INTESTINE	0.01	0.01	0.0342	FALSE	33	36	9	21	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	RP11-353N4.6--SEC22B	2	1	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	247	387	0.01	0.01	0.0228	0.0114	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SW620_LARGE_INTESTINE	0.01	0.01	0.0342	FALSE	33	36	9	21	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	C19orf40--KPNB1	2	0	C19orf40	1138	chr19:33463252:+	KPNB1	18275	chr17:45741525:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	C19orf40->chr19:33463115-33469128:+,KPNB1->chr17:45726842-45762871:+,karyopherin_subunit_beta_1	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	CPNE1--ZMYND8	2	0	CPNE1	1078	chr20:34252801:-	ZMYND8	33144	chr20:45878183:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	CPNE1->chr20:34213953-34252878:-,copine_1,ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	CPSF6--CHMP1A	2	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	95	74	6	34	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	CTD-2012K14.6--HMGB3	2	0	CTD-2012K14.6	1664	chr16:67597198:-	HMGB3	8691	chrX:150154068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	CTD-2012K14.6->chr16:67583117-67597861:-,HMGB3->chrX:150148982-150159248:+,high_mobility_group_box_3	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	KIAA0247--COX16	2	0	KIAA0247	1233	chr14:70078545:+	COX16	17148	chr14:70809446:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	KIAA0247->chr14:70078313-70181859:+,COX16->COX16_cytochrome_c_oxidase_assembly_homolog,chr14:70791798-70826448:-	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	MRPS6--AXIN2	2	0	MRPS6	1045	chr21:35445568:+	AXIN2	15053	chr17:63554854:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,AXIN2->Oncogene{Bushman},axin_2,chr17:63524681-63557765:-	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	N4BP1--RP11-748H22.1	2	0	N4BP1	2735	chr16:48643686:-	RP11-748H22.1	22334	chr11:101464411:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	N4BP1->NEDD4_binding_protein_1,chr16:48572637-48654059:-,RP11-748H22.1->chr11:101455026-101465887:+	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	PSMD8--GLOD4	2	0	PSMD8	1426	chr19:38865601:+	GLOD4	13678	chr17:681984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	PSMD8->chr19:38865176-38874464:+,proteasome_26S_subunit,_non-ATPase_8,GLOD4->chr17:660337-685581:-,glyoxalase_domain_containing_4	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	RP11-624L4.1--RP11-265N7.1	2	0	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	SW620_LARGE_INTESTINE	1	1	0.0228	FALSE	0	20	1	20	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	SUGP2--PRPF38B	2	0	SUGP2	3133	chr19:19141760:-	PRPF38B	28323	chr1:109241226:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	SUGP2->SURP_and_G-patch_domain_containing_2,chr19:19101697-19144832:-,PRPF38B->chr1:109234945-109244425:+,pre-mRNA_processing_factor_38B	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	XRCC5--RPL37A	2	0	XRCC5	2602	chr2:216974180:+	RPL37A	31413	chr2:217363993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	1	1	0	8	1	TRUE	ACH-000651
SW620_LARGE_INTESTINE	ZEB1--RTN4	2	0	ZEB1	1798	chr10:31608221:+	RTN4	42850	chr2:55214834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	SW620_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000651
SW620_LARGE_INTESTINE	TMSB10--TMSB4X	1	3	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	2969	6268	0	0	0.0114	0.0342	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SW620_LARGE_INTESTINE	0	0	0.0456	FALSE	0	1	0	17	1	FALSE	ACH-000651
SW620_LARGE_INTESTINE	CAPZA2--SRP9	1	2	CAPZA2	3371	chr7:116502704:+	SRP9	25493	chr1:225965637:+	ONLY_REF_SPLICE	YES	120	86	0.02	0.03	0.0114	0.0228	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	SW620_LARGE_INTESTINE	0.02	0.03	0.0342	TRUE	0	0	0	9	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	XRN2--PLK1S1	1	2	XRN2	1170	chr20:21284111:+	PLK1S1	33003	chr20:21142512:+	ONLY_REF_SPLICE	YES	502	127	0.01	0.02	0.0114	0.0228	LOCAL_REARRANGEMENT:+:[56682],XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+,PLK1S1->Oncogene{Bushman},chr20:21106624-21227260:+	SW620_LARGE_INTESTINE	0.01	0.02	0.0342	FALSE	0	0	0	1	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	ARNTL2--RP11-729I10.2	1	1	ARNTL2	15041	chr12:27556474:+	RP11-729I10.2	26474	chr12:22022516:+	ONLY_REF_SPLICE	YES	104	0	0.02	1	0.0114	0.0114	ARNTL2->aryl_hydrocarbon_receptor_nuclear_translocator_like_2,chr12:27485787-27576241:+,RP11-729I10.2->chr12:21980144-22040891:+	SW620_LARGE_INTESTINE	0.02	1	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	C7orf50--SUN1	1	1	C7orf50	3078	chr7:1166893:-	SUN1	22873	chr7:878435:+	ONLY_REF_SPLICE	YES	608	255	0	0.01	0.0114	0.0114	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SW620_LARGE_INTESTINE	0	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	CNOT1--GOT2	1	1	CNOT1	30335	chr16:58577511:-	GOT2	58291	chr16:58750083:-	ONLY_REF_SPLICE	YES	647	1289	0	0	0.0114	0.0114	LOCAL_REARRANGEMENT:-:[77245],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,GOT2->chr16:58741035-58768261:-,glutamic-oxaloacetic_transaminase_2	SW620_LARGE_INTESTINE	0	0	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	CUL4A--APP	1	1	CUL4A	6863	chr13:113883833:+	APP	41444	chr21:27354790:-	ONLY_REF_SPLICE	YES	336	1790	0.01	0	0.0114	0.0114	GTEx&tcga_normals:1/3694=0.03%,CUL4A->chr13:113862552-113919399:+,cullin_4A,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	SW620_LARGE_INTESTINE	0	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	FANCC--C9orf3	1	1	FANCC	12077	chr9:97897628:-	C9orf3	54328	chr9:97781732:+	ONLY_REF_SPLICE	NO	68	212	0.03	0.01	0.0114	0.0114	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_INVERSION:-:+:[11895],FANCC->ArcherDX_panel,Fanconi_anemia_complementation_group_C,FoundationOne_panel,Oncogene{Bushman},chr9:97861336-98079991:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SW620_LARGE_INTESTINE	0.01	0.03	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	HOXB3--YWHAE	1	1	HOXB3	2581	chr17:46667487:-	YWHAE	24231	chr17:1268352:-	ONLY_REF_SPLICE	NO	24	4906	0.08	0	0.0114	0.0114	HOXB3->chr17:46626232-46682274:-,homeobox_B3,YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon	SW620_LARGE_INTESTINE	0	0.08	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	KPNA5--SMEK2	1	1	KPNA5	7154	chr6:117026323:+	SMEK2	25781	chr2:55842642:-	ONLY_REF_SPLICE	YES	9	196	0.18	0.01	0.0114	0.0114	KPNA5->Oncogene{Bushman},chr6:117002350-117063029:+,karyopherin_subunit_alpha_5,SMEK2->chr2:55774428-55846015:-	SW620_LARGE_INTESTINE	0.01	0.18	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	LINC00338--SLC1A5	1	1	LINC00338	2747	chr17:75085353:+	SLC1A5	12020	chr19:47287816:-	ONLY_REF_SPLICE	YES	115	2173	0.02	0	0.0114	0.0114	LINC00338->chr17:75082798-75091068:+,SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5	SW620_LARGE_INTESTINE	0	0.02	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	NCOR2--UBC	1	1	NCOR2	2329	chr12:125020111:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	7	98	0.22	0.02	0.0114	0.0114	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SW620_LARGE_INTESTINE	0.02	0.22	0.0228	TRUE	48	117	12	14	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	NCOR2--UBC	1	1	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	6	98	0.25	0.02	0.0114	0.0114	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SW620_LARGE_INTESTINE	0.02	0.25	0.0228	TRUE	145	312	16	51	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	RAB40C--TMEM8A	1	1	RAB40C	2077	chr16:640433:+	TMEM8A	17482	chr16:427848:-	ONLY_REF_SPLICE	YES	63	30	0.03	0.06	0.0114	0.0114	GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5]},GTEx_v2:{count=3;pct=0.03%;dist=Pancreas=1,Lung=1,Brain_-_Cerebellum=1},RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+,TMEM8A->chr16:420773-437113:-,transmembrane_protein_8A	SW620_LARGE_INTESTINE	0.03	0.06	0.0228	TRUE	6	8	0	5	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	177	0.4	0.01	0.0114	0.0114	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SW620_LARGE_INTESTINE	0.01	0.4	0.0228	FALSE	2	31	0	60	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	10	177	0.17	0.01	0.0114	0.0114	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SW620_LARGE_INTESTINE	0.01	0.17	0.0228	FALSE	16	356	14	466	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	15	1	0.12	0.0114	0.0114	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW620_LARGE_INTESTINE	0.12	1	0.0228	TRUE	458	1351	185	561	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	72	1	0.03	0.0114	0.0114	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW620_LARGE_INTESTINE	0.03	1	0.0228	TRUE	465	1949	224	605	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	RPS3--MKI67	1	1	RPS3	2292	chr11:75111821:+	MKI67	16082	chr10:129917583:-	ONLY_REF_SPLICE	YES	5515	194	0	0.01	0.0114	0.0114	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	SW620_LARGE_INTESTINE	0	0.01	0.0228	FALSE	0	0	0	4	0	FALSE	ACH-000651
SW620_LARGE_INTESTINE	STK11--DAZAP1	1	1	STK11	3716	chr19:1207202:+	DAZAP1	23111	chr19:1417499:+	ONLY_REF_SPLICE	YES	66	413	0.03	0	0.0114	0.0114	STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	SW620_LARGE_INTESTINE	0	0.03	0.0228	FALSE	1	0	0	2	0	FALSE	ACH-000651
TE10_OESOPHAGUS	MT-ND4--MT-ND4L	113	69	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	2748	0	0.06	1	1.1338	0.6923	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE10_OESOPHAGUS	0.06	1	1.8261	FALSE	344	827	44	306	0	FALSE	ACH-000318
TE10_OESOPHAGUS	MT-ND4--MT-ND4L	4	111	MT-ND4	2041	chrM:11800:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	NO	5446	1	0.02	0.99	0.0401	1.1137	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE10_OESOPHAGUS	0.02	0.99	1.1538	FALSE	344	826	44	305	0	FALSE	ACH-000318
TE10_OESOPHAGUS	MT-ND4--MT-ND4L	4	110	MT-ND4	2012	chrM:11771:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	5941	0	0.02	1	0.0401	1.1037	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE10_OESOPHAGUS	0.02	1	1.1438	FALSE	344	826	44	305	0	FALSE	ACH-000318
TE10_OESOPHAGUS	MT-ND4--MT-ND4L	3	110	MT-ND4	1971	chrM:11730:+	MT-ND4L	5486	chrM:10577:+	INCL_NON_REF_SPLICE	YES	6411	0	0.02	1	0.0301	1.1037	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE10_OESOPHAGUS	0.02	1	1.1338	FALSE	344	827	44	306	0	FALSE	ACH-000318
TE10_OESOPHAGUS	SENP6--ANKRD36BP2	25	4	SENP6	21323	chr6:76388643:+	ANKRD36BP2	54209	chr2:89104301:+	ONLY_REF_SPLICE	YES	3	0	0.91	1	0.2508	0.0401	SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+,ANKRD36BP2->ankyrin_repeat_domain_36B_pseudogene_2,chr2:89065324-89106126:+	TE10_OESOPHAGUS	0.91	1	0.2909	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	MT-TA--MT-TC	16	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1605	0.0401	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE10_OESOPHAGUS	1	1	0.2006	FALSE	462	80	0	856	0	FALSE	ACH-000318
TE10_OESOPHAGUS	SFN--NACC1	12	0	SFN	2215	chr1:27190847:+	NACC1	10989	chr19:13250335:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1204	0	SFN->chr1:27189633-27190947:+,stratifin,NACC1->chr19:13228917-13251955:+,nucleus_accumbens_associated_1	TE10_OESOPHAGUS	1	1	0.1204	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	C15orf57--CBX3	11	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.1104	0.0201	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TE10_OESOPHAGUS	0.87	1	0.1305	TRUE	267	562	48	632	0	FALSE	ACH-000318
TE10_OESOPHAGUS	MRPL21--IGHMBP2	9	7	MRPL21	1113	chr11:68671191:-	IGHMBP2	12106	chr11:68673537:+	ONLY_REF_SPLICE	YES	4	0	0.8	1	0.0903	0.0702	LOCAL_INVERSION:-:+:[7],MRPL21->chr11:68658744-68671303:-,mitochondrial_ribosomal_protein_L21,IGHMBP2->chr11:68671310-68708070:+,immunoglobulin_mu_binding_protein_2	TE10_OESOPHAGUS	0.8	1	0.1605	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	TIMM23B--LINC00843	10	1	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1003	0.01	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TE10_OESOPHAGUS	1	1	0.1103	TRUE	508	994	45	981	0	FALSE	ACH-000318
TE10_OESOPHAGUS	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0702	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE10_OESOPHAGUS	1	1	0.0702	FALSE	462	80	0	856	0	FALSE	ACH-000318
TE10_OESOPHAGUS	TCEB3--MAZ	6	0	TCEB3	5415	chr1:24077809:+	MAZ	21566	chr16:29822186:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0602	0	TCEB3->chr1:24069645-24088549:+,transcription_elongation_factor_B_subunit_3,MAZ->MYC_associated_zinc_finger_protein,chr16:29817427-29823649:+	TE10_OESOPHAGUS	1	1	0.0602	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	MT-ND4--MT-ND4L	4	7	MT-ND4	1545	chrM:11304:+	MT-ND4L	5670	chrM:10761:+	INCL_NON_REF_SPLICE	YES	579	0	0.02	1	0.0401	0.0702	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE10_OESOPHAGUS	0.02	1	0.1103	FALSE	344	827	44	306	0	FALSE	ACH-000318
TE10_OESOPHAGUS	FAM96B--KDELR1	5	0	FAM96B	3268	chr16:66966059:-	KDELR1	12132	chr19:48886115:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0502	0	FAM96B->chr16:66965959-66968326:-,family_with_sequence_similarity_96_member_B,KDELR1->KDEL_endoplasmic_reticulum_protein_retention_receptor_1,chr19:48885827-48894810:-	TE10_OESOPHAGUS	1	1	0.0502	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	XXbac-BPG252P9.9--TUBBP2	5	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0502	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	TE10_OESOPHAGUS	1	1	0.0502	TRUE	0	1	0	48	1	FALSE	ACH-000318
TE10_OESOPHAGUS	ZNHIT6--COL24A1	5	0	ZNHIT6	4339	chr1:86167840:-	COL24A1	70666	chr1:86211189:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0502	0	LOCAL_REARRANGEMENT:-:[20800],ZNHIT6->chr1:86115106-86174116:-,zinc_finger_HIT-type_containing_6,COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1	TE10_OESOPHAGUS	1	1	0.0502	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	ACOT2--UBE2R2	4	0	ACOT2	2777	chr14:74036100:+	UBE2R2	9785	chr9:33817819:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	ACOT2->acyl-CoA_thioesterase_2,chr14:74034324-74042357:+,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	TE10_OESOPHAGUS	1	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	CAPNS1--SPINT2	4	0	CAPNS1	1583	chr19:36631059:+	SPINT2	16993	chr19:38779778:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0401	0	CAPNS1->calpain_small_subunit_1,chr19:36630477-36641255:+,SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2	TE10_OESOPHAGUS	1	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	MT-ND4--MT-ND4L	4	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE10_OESOPHAGUS	1	1	0.0401	FALSE	344	821	44	306	0	FALSE	ACH-000318
TE10_OESOPHAGUS	PLEC--RNF31	4	0	PLEC	28102	chr8:144998288:-	RNF31	41188	chr14:24617010:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	PLEC->chr8:144989321-145050902:-,plectin,RNF31->chr14:24615892-24629870:+,ring_finger_protein_31	TE10_OESOPHAGUS	1	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	PLEKHA5--PICALM	4	0	PLEKHA5	3233	chr12:19285384:+	PICALM	68674	chr11:85695016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0401	0	PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	TE10_OESOPHAGUS	1	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	RP11-792D21.2--CCND1	4	0	RP11-792D21.2	8540	chr4:79603442:+	CCND1	18803	chr11:69467870:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	RP11-792D21.2->chr4:79567057-79603853:+,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	TE10_OESOPHAGUS	1	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	TMEM184B--FOXM1	4	0	TMEM184B	4573	chr22:38641989:-	FOXM1	23609	chr12:2975659:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	TMEM184B->chr22:38615298-38669040:-,transmembrane_protein_184B,FOXM1->Oncogene{Bushman},chr12:2966847-2986206:-,forkhead_box_M1	TE10_OESOPHAGUS	1	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	AGO1--ETS2	3	0	AGO1	7231	chr1:36360870:+	ETS2	41850	chr21:40196213:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	AGO1->argonaute_1,_RISC_catalytic_component,chr1:36335409-36395211:+,ETS2->ETS_proto-oncogene_2,_transcription_factor,Oncogene{Bushman},chr21:40177231-40196879:+	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	AGR2--OCIAD1	3	0	AGR2	11018	chr7:16832342:-	OCIAD1	24496	chr4:48853902:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	AGR2->anterior_gradient_2,_protein_disulphide_isomerase_family_member,chr7:16831435-16873057:-,OCIAD1->OCIA_domain_containing_1,chr4:48807229-48863834:+	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	ATIC--LCN2	3	0	ATIC	17846	chr2:216214363:+	LCN2	21365	chr9:130911744:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	ATIC->5-aminoimidazole-4-carboxamide_ribonucleotide_formyltransferase/IMP_cyclohydrolase,Oncogene{Bushman},chr2:216176540-216214487:+,LCN2->chr9:130911350-130915734:+,lipocalin_2	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	BCL2L2--MYH9	3	0	BCL2L2	1685	chr14:23768683:+	MYH9	50418	chr22:36678323:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	BCL2L2->ArcherDX_panel,BCL2_like_2,FoundationOne_panel,Oncogene{Bushman},chr14:23767999-23780968:+,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	CALR--NASP	3	0	CALR	4877	chr19:13054593:+	NASP	17559	chr1:46073055:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	CALR->calreticulin,chr19:13049392-13055303:+,NASP->chr1:46049518-46084566:+,nuclear_autoantigenic_sperm_protein	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	CDC37--B4GALT1	3	0	CDC37	9478	chr19:10502097:-	B4GALT1	20718	chr9:33112234:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	GAPDH--PLXND1	3	0	GAPDH	4230	chr12:6646346:+	PLXND1	12844	chr3:129304807:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,PLXND1->chr3:129274018-129325661:-,plexin_D1	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	GATAD2B--PRPF3	3	0	GATAD2B	1243	chr1:153895209:-	PRPF3	35879	chr1:150321633:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,PRPF3->chr1:150293925-150325671:+,pre-mRNA_processing_factor_3	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	HAUS4--PIM3	3	0	HAUS4	8652	chr14:23415574:-	PIM3	14914	chr22:50357285:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	HAUS4->HAUS_augmin_like_complex_subunit_4,chr14:23415437-23426370:-,PIM3->Oncogene{Bushman},Pim-3_proto-oncogene,_serine/threonine_kinase,chr22:50354161-50357728:+	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	HBS1L--RPS8	3	0	HBS1L	25445	chr6:135286056:-	RPS8	35746	chr1:45243683:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	HBS1L->HBS1_like_translational_GTPase,chr6:135281516-135424194:-,RPS8->chr1:45240923-45244451:+,ribosomal_protein_S8	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	HIST1H2AC--SRSF4	3	0	HIST1H2AC	1548	chr6:26124920:+	SRSF4	16035	chr1:29475245:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	HIST1H2AC->chr6:26124373-26139344:+,histone_cluster_1,_H2ac,SRSF4->chr1:29474255-29508499:-,serine/arginine-rich_splicing_factor_4	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	HMGB1--GADD45B	3	0	HMGB1	8000	chr13:31035579:-	GADD45B	15299	chr19:2477723:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1,GADD45B->chr19:2476120-2478257:+,growth_arrest_and_DNA_damage_inducible_beta	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	HSP90B1--FH	3	0	HSP90B1	1397	chr12:104324281:+	FH	20960	chr1:241676976:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	HSP90B1->Oncogene{Bushman},chr12:104323885-104347423:+,heat_shock_protein_90kDa_beta_family_member_1,FH->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:241660903-241683061:-,fumarate_hydratase	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	LETM1--BRIX1	3	0	LETM1	20068	chr4:1816015:-	BRIX1	33676	chr5:34925598:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	LETM1->chr4:1813206-1857974:-,leucine_zipper_and_EF-hand_containing_transmembrane_protein_1,BRIX1->BRX1,_biogenesis_of_ribosomes,chr5:34915481-34926101:+	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	NDUFA4--PHF14	3	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	TE10_OESOPHAGUS	1	1	0.0301	TRUE	19	32	3	60	0	FALSE	ACH-000318
TE10_OESOPHAGUS	NUMA1--ENO1	3	0	NUMA1	34003	chr11:71718700:-	ENO1	52656	chr1:8923006:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	OAZ1--USP5	3	0	OAZ1	1194	chr19:2269678:+	USP5	17642	chr12:6973040:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,USP5->chr12:6961292-6975796:+,ubiquitin_specific_peptidase_5	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	PIK3R4--CTNND1	3	0	PIK3R4	24958	chr3:130397977:-	CTNND1	52369	chr11:57584870:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	PIK3R4->chr3:130397779-130465673:-,phosphoinositide-3-kinase_regulatory_subunit_4,CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	PRDX5--KRT4	3	0	PRDX5	3293	chr11:64088199:+	KRT4	13904	chr12:53200913:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	GTEx&tcga_normals:3/3694=0.08%,PRDX5->chr11:64085560-64089283:+,peroxiredoxin_5,KRT4->chr12:53200333-53208335:-,keratin_4	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	RP11-347C12.2--DAZAP1	3	0	RP11-347C12.2	25654	chr16:30278869:-	DAZAP1	41943	chr19:1417503:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	RP11-347C12.2->chr16:30234230-30346695:-,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	RP5-857K21.7--ATG3	3	0	RP5-857K21.7	1266	chr1:568402:+	ATG3	4922	chr3:112280654:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	RP5-857K21.7->chr1:568137-568818:+,ATG3->autophagy_related_3,chr3:112251356-112280893:-	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	RPL18AP3--MMS19	3	0	RPL18AP3	1088	chr12:104659143:+	MMS19	22859	chr10:99218663:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	RPL18AP3->chr12:104659056-104659669:+,ribosomal_protein_L18a_pseudogene_3,MMS19->MMS19_homolog,_cytosolic_iron-sulfur_assembly_component,chr10:99218081-99258551:-	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	SH3BGRL3--MTATP8P1	3	0	SH3BGRL3	3077	chr1:26607743:+	MTATP8P1	6461	chr1:569034:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	SH3BGRL3->SH3_domain_binding_glutamate_rich_protein_like_3,chr1:26605667-26608007:+,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	SMEK1--NELFCD	3	0	SMEK1	11665	chr14:91937181:-	NELFCD	24366	chr20:57562763:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	SMEK1->chr14:91923955-91976898:-,NELFCD->chr20:57556263-57570188:+,negative_elongation_factor_complex_member_C/D	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	TCOF1--LEO1	3	0	TCOF1	10821	chr5:149755884:+	LEO1	32455	chr15:52258141:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	TCOF1->chr5:149737202-149779871:+,treacle_ribosome_biogenesis_factor_1,LEO1->LEO1_homolog,_Paf1/RNA_polymerase_II_complex_component,chr15:52230222-52264003:-	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	TRAF7--TBC1D10B	3	0	TRAF7	12314	chr16:2226788:+	TBC1D10B	23137	chr16:30371162:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	TRAF7->Oncogene{Bushman},TNF_receptor_associated_factor_7,chr16:2205699-2228130:+,TBC1D10B->TBC1_domain_family_member_10B,chr16:30368423-30381585:-	TE10_OESOPHAGUS	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	CAPZA1--FDFT1	2	0	CAPZA1	1711	chr1:113162505:+	FDFT1	24237	chr8:11683588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CAPZA1->capping_actin_protein_of_muscle_Z-line_alpha_subunit_1,chr1:113161795-113214241:+,FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	CMTM8--CMTM7	2	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	TE10_OESOPHAGUS	1	1	0.0201	FALSE	118	557	29	88	0	FALSE	ACH-000318
TE10_OESOPHAGUS	CTD-2314B22.3--SELO	2	0	CTD-2314B22.3	9273	chr14:19894700:-	SELO	27888	chr22:50644746:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CTD-2314B22.3->chr14:19854098-19925348:-,SELO->chr22:50639408-50656045:+	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	FAF1--RP11-776H12.1	2	0	FAF1	7098	chr1:51204535:-	RP11-776H12.1	37971	chr1:61006105:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,RP11-776H12.1->chr1:61005921-61106163:-	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	FGFR2--GDI2	2	0	FGFR2	1497	chr10:123357476:-	GDI2	41020	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	GAPDH--DMAP1	2	0	GAPDH	5046	chr12:6647162:+	DMAP1	8676	chr1:44679381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,DMAP1->DNA_methyltransferase_1_associated_protein_1,chr1:44679127-44686353:+	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	HSP90B1--ZWILCH	2	0	HSP90B1	6280	chr12:104331584:+	ZWILCH	37669	chr15:66840689:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	HSP90B1->Oncogene{Bushman},chr12:104323885-104347423:+,heat_shock_protein_90kDa_beta_family_member_1,ZWILCH->chr15:66797297-66842115:+,zwilch_kinetochore_protein	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	MBD2--PPP1CB	2	0	MBD2	10258	chr18:51686135:-	PPP1CB	17267	chr2:28974904:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2,PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	RC3H2--PTPN13	2	0	RC3H2	9887	chr9:125639750:-	PTPN13	45842	chr4:87655456:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	RC3H2->chr9:125606835-125667620:-,ring_finger_and_CCCH-type_domains_2,PTPN13->Oncogene{Bushman},chr4:87515468-87736324:+,protein_tyrosine_phosphatase,_non-receptor_type_13	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	RCC1--MNAT1	2	0	RCC1	2175	chr1:28834672:+	MNAT1	27690	chr14:61346432:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	RP11-435B5.4--PHLDA1	2	0	RP11-435B5.4	2843	chr1:143465380:-	PHLDA1	23438	chr12:76423872:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	RP11-435B5.4->chr1:143354963-143467632:-,PHLDA1->chr12:76419227-76427712:-,pleckstrin_homology_like_domain_family_A_member_1	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	RP4-756H11.3--CSNK2A2	2	0	RP4-756H11.3	1089	chr7:66119613:+	CSNK2A2	10601	chr16:58230748:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	RP4-756H11.3->chr7:66119525-66134842:+,CSNK2A2->casein_kinase_2_alpha_2,chr16:58191811-58231824:-	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	TATDN1--MTCH2	2	0	TATDN1	9771	chr8:125520715:-	MTCH2	27689	chr11:47647293:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	ZNF271--RPRD1A	2	0	ZNF271	1951	chr18:32871196:+	RPRD1A	22631	chr18:33573263:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	ZNF271->chr18:32870246-32890730:+,RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	ZNF483--FLNB	2	0	ZNF483	1104	chr9:114287542:+	FLNB	43621	chr3:58118535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	ZNF483->chr9:114287439-114340124:+,zinc_finger_protein_483,FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
TE10_OESOPHAGUS	ZNF638--PNO1	2	0	ZNF638	2332	chr2:71558995:+	PNO1	55151	chr2:68400479:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638,PNO1->chr2:68384976-68403370:+,partner_of_NOB1_homolog	TE10_OESOPHAGUS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000318
NCIH1105_LUNG	UQCRC2--LCMT1	110	62	UQCRC2	4162	chr16:21969920:+	LCMT1	26953	chr16:25162875:+	ONLY_REF_SPLICE	YES	185	111	0.48	0.61	1.2687	0.7151	UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II,LCMT1->chr16:25123050-25189552:+,leucine_carboxyl_methyltransferase_1	NCIH1105_LUNG	0.48	0.61	1.9838	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	TIMM23B--LINC00843	63	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7266	0.3575	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1105_LUNG	1	1	1.0841	TRUE	508	994	45	981	0	FALSE	ACH-000780
NCIH1105_LUNG	CCDC171--SNAPC3	34	10	CCDC171	16066	chr9:15695335:+	SNAPC3	58994	chr9:15433550:+	ONLY_REF_SPLICE	YES	41	109	0.52	0.29	0.3921	0.1153	LOCAL_REARRANGEMENT:+:[86944],CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171,SNAPC3->Oncogene{Bushman},chr9:15422702-15465951:+,small_nuclear_RNA_activating_complex_polypeptide_3	NCIH1105_LUNG	0.29	0.52	0.5074	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	TIMM23--RP11-464F9.1	33	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	109	4	0.25	0.9	0.3806	0.0461	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1105_LUNG	0.25	0.9	0.4267	TRUE	519	3926	326	965	0	FALSE	ACH-000780
NCIH1105_LUNG	OR51S1--TP53I11	31	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3575	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH1105_LUNG	1	1	0.3575	TRUE	402	216	10	229	0	FALSE	ACH-000780
NCIH1105_LUNG	ZNF654--HMGB2	31	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3575	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1105_LUNG	1	1	0.3575	TRUE	0	0	0	518	0	FALSE	ACH-000780
NCIH1105_LUNG	MAF--RP11-679B19.2	22	13	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2537	0.1499	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	NCIH1105_LUNG	1	1	0.4036	TRUE	48	25	3	38	0	FALSE	ACH-000780
NCIH1105_LUNG	RP4-565E6.1--HYDIN	22	8	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	6	1	0.83	0.2537	0.0923	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1105_LUNG	0.83	1	0.346	TRUE	456	1387	91	133	0	FALSE	ACH-000780
NCIH1105_LUNG	RP11-123O10.4--GRIP1	21	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2422	0.0807	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1105_LUNG	1	1	0.3229	FALSE	416	2512	207	587	0	FALSE	ACH-000780
NCIH1105_LUNG	CTD-2008L17.1--RP11-456O19.2	19	14	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	5	0	0.87	1	0.2191	0.1615	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1105_LUNG	0.87	1	0.3806	FALSE	20	187	4	79	0	FALSE	ACH-000780
NCIH1105_LUNG	RP11-680G10.1--GSE1	18	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	25	1	0.53	0.2076	0.1153	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1105_LUNG	0.53	1	0.3229	TRUE	458	1351	185	561	0	FALSE	ACH-000780
NCIH1105_LUNG	MT-ND6--MT-TE	16	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1845	0.0115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1105_LUNG	0.94	1	0.196	FALSE	499	1288	110	792	0	FALSE	ACH-000780
NCIH1105_LUNG	TMCO3--C17orf85	13	10	TMCO3	8708	chr13:114164739:+	C17orf85	26252	chr17:3728344:-	ONLY_REF_SPLICE	YES	155	33	0.13	0.41	0.1499	0.1153	TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,C17orf85->chr17:3714460-3749545:-	NCIH1105_LUNG	0.13	0.41	0.2652	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	MT-TA--MT-TC	14	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1615	0.0346	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1105_LUNG	1	1	0.1961	FALSE	462	80	0	856	0	FALSE	ACH-000780
NCIH1105_LUNG	RP11-680G10.1--GSE1	11	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	155	1	0.1	0.1269	0.0807	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1105_LUNG	0.1	1	0.2076	TRUE	465	1949	224	605	0	FALSE	ACH-000780
NCIH1105_LUNG	MT-ND6--MT-TE	12	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1384	0.0231	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1105_LUNG	0.93	1	0.1615	FALSE	499	1288	110	792	0	FALSE	ACH-000780
NCIH1105_LUNG	TMCO3--C17orf85	9	7	TMCO3	8708	chr13:114164739:+	C17orf85	29250	chr17:3725346:-	ONLY_REF_SPLICE	YES	155	59	0.09	0.21	0.1038	0.0807	TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,C17orf85->chr17:3714460-3749545:-	NCIH1105_LUNG	0.09	0.21	0.1845	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	RP11-120D5.1--MID1	7	11	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	7	0.86	0.72	0.0807	0.1269	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1105_LUNG	0.72	0.86	0.2076	FALSE	16	356	14	466	0	FALSE	ACH-000780
NCIH1105_LUNG	MT-ND6--MT-TE	8	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0923	0.0461	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1105_LUNG	0.92	1	0.1384	FALSE	499	1288	110	792	0	FALSE	ACH-000780
NCIH1105_LUNG	SH3GL2--ZNF418	7	6	SH3GL2	4448	chr9:17747132:+	ZNF418	22649	chr19:58439415:-	ONLY_REF_SPLICE	YES	40	0	0.25	1	0.0807	0.0692	SH3GL2->Oncogene{Bushman},SH3_domain_containing_GRB2_like_2,chr9:17579080-17797127:+,ZNF418->chr19:58433252-58446761:-,zinc_finger_protein_418	NCIH1105_LUNG	0.25	1	0.1499	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	AP003900.6--AP000345.1	8	0	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0923	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1105_LUNG	1	1	0.0923	TRUE	0	8	0	37	1	FALSE	ACH-000780
NCIH1105_LUNG	NPM1P24--SET	8	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0923	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1105_LUNG	1	1	0.0923	TRUE	0	0	0	434	0	FALSE	ACH-000780
NCIH1105_LUNG	CTD-2008L17.1--RP11-456O19.2	5	6	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	5	3	0.69	0.79	0.0577	0.0692	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1105_LUNG	0.69	0.79	0.1269	FALSE	33	240	4	98	0	FALSE	ACH-000780
NCIH1105_LUNG	UQCRC2--LCMT1	2	18	UQCRC2	4162	chr16:21969920:+	LCMT1	30265	chr16:25175919:+	ONLY_REF_SPLICE	NO	185	110	0.1	0.15	0.0231	0.2076	UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II,LCMT1->chr16:25123050-25189552:+,leucine_carboxyl_methyltransferase_1	NCIH1105_LUNG	0.1	0.15	0.2307	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	SHFM1--DLX6-AS1	5	2	SHFM1	1204	chr7:96339000:-	DLX6-AS1	31487	chr7:96598430:-	ONLY_REF_SPLICE	YES	521	591	0.01	0.01	0.0577	0.0231	SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-	NCIH1105_LUNG	0.01	0.01	0.0808	FALSE	0	0	0	4	0	FALSE	ACH-000780
NCIH1105_LUNG	RP11-120D5.1--MID1	2	13	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	2	7	0.88	0.68	0.0231	0.1499	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1105_LUNG	0.68	0.88	0.173	FALSE	2	31	0	60	0	FALSE	ACH-000780
NCIH1105_LUNG	LINC00299--AC007464.1	4	3	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0461	0.0346	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	NCIH1105_LUNG	0.78	1	0.0807	TRUE	67	49	0	25	0	FALSE	ACH-000780
NCIH1105_LUNG	MT-ND6--MT-TE	4	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0461	0.0346	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1105_LUNG	0.88	1	0.0807	FALSE	499	1288	110	792	0	FALSE	ACH-000780
NCIH1105_LUNG	MT-ND6--MT-TE	3	6	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0346	0.0692	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1105_LUNG	0.9	1	0.1038	FALSE	499	1288	110	792	0	FALSE	ACH-000780
NCIH1105_LUNG	MT-ND6--MT-TE	3	6	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0346	0.0692	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1105_LUNG	0.82	1	0.1038	FALSE	499	1288	110	792	0	FALSE	ACH-000780
NCIH1105_LUNG	MT-ND6--MT-TE	3	5	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.0346	0.0577	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1105_LUNG	0.73	1	0.0923	FALSE	499	1288	110	792	0	FALSE	ACH-000780
NCIH1105_LUNG	RP11-123O10.4--GRIP1	3	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0.0577	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1105_LUNG	1	1	0.0923	FALSE	93	270	15	244	0	FALSE	ACH-000780
NCIH1105_LUNG	RP11-319G9.5--WWOX	4	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	41	1	0.11	0.0461	0.0115	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	NCIH1105_LUNG	0.11	1	0.0576	FALSE	154	425	28	76	0	FALSE	ACH-000780
NCIH1105_LUNG	AC131097.3--AC093642.5	3	4	AC131097.3	2273	chr2:242824786:+	AC093642.5	11670	chr2:243037038:+	ONLY_REF_SPLICE	YES	10	5	0.41	0.58	0.0346	0.0461	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	NCIH1105_LUNG	0.41	0.58	0.0807	FALSE	3	20	2	16	0	FALSE	ACH-000780
NCIH1105_LUNG	LINC01014--KCNMB2	4	0	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH1105_LUNG	1	1	0.0461	FALSE	11	60	26	37	0	FALSE	ACH-000780
NCIH1105_LUNG	MNS1--TEX9	4	0	MNS1	10647	chr15:56720962:-	TEX9	31887	chr15:56720843:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0	NEIGHBORS_OVERLAP:-:+:[24453],MNS1->chr15:56713742-56757335:-,meiosis_specific_nuclear_structural_1,TEX9->chr15:56536207-56738195:+,testis_expressed_9	NCIH1105_LUNG	1	1	0.0461	FALSE	0	0	0	3	0	FALSE	ACH-000780
NCIH1105_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1003	chrM:10762:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1105_LUNG	1	1	0.0461	FALSE	344	821	44	306	0	FALSE	ACH-000780
NCIH1105_LUNG	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1105_LUNG	1	1	0.0461	FALSE	462	80	0	856	0	FALSE	ACH-000780
NCIH1105_LUNG	LINC00299--AC007464.1	3	3	LINC00299	17125	chr2:8200478:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0346	0.0346	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	NCIH1105_LUNG	0.86	1	0.0692	TRUE	20	19	0	15	0	FALSE	ACH-000780
NCIH1105_LUNG	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0.0346	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1105_LUNG	1	1	0.0692	FALSE	462	80	0	856	0	FALSE	ACH-000780
NCIH1105_LUNG	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0.0346	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1105_LUNG	1	1	0.0692	FALSE	462	80	0	856	0	FALSE	ACH-000780
NCIH1105_LUNG	AGBL4--AGBL4-IT1	3	1	AGBL4	3399	chr1:50162985:-	AGBL4-IT1	30507	chr1:49840016:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0346	0.0115	NEIGHBORS_OVERLAP:-:-:[97884],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,AGBL4-IT1->AGBL4_intronic_transcript_1,chr1:49839873-49937757:-	NCIH1105_LUNG	0.67	1	0.0461	FALSE	75	131	5	14	0	FALSE	ACH-000780
NCIH1105_LUNG	ANKS3--PPL	3	1	ANKS3	10461	chr16:4764052:-	PPL	34324	chr16:4942214:-	ONLY_REF_SPLICE	YES	41	21	0.09	0.16	0.0346	0.0115	ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-,PPL->chr16:4932508-5010742:-,periplakin	NCIH1105_LUNG	0.09	0.16	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	ARHGDIA--MT-CO3	3	1	ARHGDIA	3700	chr17:79826583:-	MT-CO3	7752	chrM:9272:+	INCL_NON_REF_SPLICE	YES	53	0	0.07	1	0.0346	0.0115	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH1105_LUNG	0.07	1	0.0461	FALSE	0	0	0	6	0	FALSE	ACH-000780
NCIH1105_LUNG	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0346	0.0115	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1105_LUNG	0.67	1	0.0461	FALSE	292	1546	117	613	0	FALSE	ACH-000780
NCIH1105_LUNG	RP11-120D5.1--MID1	2	5	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	10	7	0.41	0.5	0.0231	0.0577	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1105_LUNG	0.41	0.5	0.0808	FALSE	0	48	1	163	0	FALSE	ACH-000780
NCIH1105_LUNG	CASC9--RP11-300E4.2	3	0	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH1105_LUNG	1	1	0.0346	TRUE	0	23	0	19	23	TRUE	ACH-000780
NCIH1105_LUNG	CTD-2281E23.2--DLGAP2	3	0	CTD-2281E23.2	3418	chr8:1208883:+	DLGAP2	8510	chr8:1449532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	GTEx_FI:{Testis=[count:34=pct:32.4],Brain=[count:24=pct:3.6],Pituitary=[count:4=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Thyroid=[count:2=pct:1.1]},CTD-2281E23.2->chr8:1054882-1212580:+,DLGAP2->chr8:1449532-1656642:+,discs_large_homolog_associated_protein_2	NCIH1105_LUNG	1	1	0.0346	TRUE	49	61	1	13	0	FALSE	ACH-000780
NCIH1105_LUNG	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1105_LUNG	1	1	0.0346	TRUE	0	0	0	434	0	FALSE	ACH-000780
NCIH1105_LUNG	UQCRC2--LCMT1	3	0	UQCRC2	1797	chr16:21964777:+	LCMT1	30265	chr16:25175919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II,LCMT1->chr16:25123050-25189552:+,leucine_carboxyl_methyltransferase_1	NCIH1105_LUNG	1	1	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	GDAP1--RP11-758M4.1	2	3	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	193	0	0.03	1	0.0231	0.0346	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH1105_LUNG	0.03	1	0.0577	TRUE	7	28	0	43	0	FALSE	ACH-000780
NCIH1105_LUNG	SH3GL2--ZNF418	1	7	SH3GL2	5538	chr9:17755831:+	ZNF418	22649	chr19:58439415:-	ONLY_REF_SPLICE	YES	44	0	0.15	1	0.0115	0.0807	SH3GL2->Oncogene{Bushman},SH3_domain_containing_GRB2_like_2,chr9:17579080-17797127:+,ZNF418->chr19:58433252-58446761:-,zinc_finger_protein_418	NCIH1105_LUNG	0.15	1	0.0922	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	SHFM1--DLX6-AS1	2	3	SHFM1	7020	chr7:96324110:-	DLX6-AS1	31487	chr7:96598430:-	ONLY_REF_SPLICE	YES	484	591	0.01	0.01	0.0231	0.0346	SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-	NCIH1105_LUNG	0.01	0.01	0.0577	FALSE	0	1	0	6	0	FALSE	ACH-000780
NCIH1105_LUNG	RP11-1L12.3--SLC5A12	1	6	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	NO	2	0	0.78	1	0.0115	0.0692	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	NCIH1105_LUNG	0.78	1	0.0807	TRUE	3	101	0	60	0	FALSE	ACH-000780
NCIH1105_LUNG	DSCR3--TTC3	2	1	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	37	135	0.07	0.02	0.0231	0.0115	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH1105_LUNG	0.02	0.07	0.0346	TRUE	0	9	0	44	1	FALSE	ACH-000780
NCIH1105_LUNG	GATS--PILRB	2	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	103	181	0.03	0.02	0.0231	0.0115	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	NCIH1105_LUNG	0.02	0.03	0.0346	TRUE	57	41	2	35	0	FALSE	ACH-000780
NCIH1105_LUNG	PVT1--SNTB1	2	1	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	1	9	0.75	0.25	0.0231	0.0115	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH1105_LUNG	0.25	0.75	0.0346	TRUE	0	0	0	25	0	FALSE	ACH-000780
NCIH1105_LUNG	RP11-120D5.1--MID1	1	5	RP11-120D5.1	2349	chrX:11125021:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	10	5	0.38	0.55	0.0115	0.0577	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1105_LUNG	0.38	0.55	0.0692	FALSE	0	5	0	14	0	FALSE	ACH-000780
NCIH1105_LUNG	ANKS3--PPL	2	0	ANKS3	10461	chr16:4764052:-	PPL	36203	chr16:4940335:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-,PPL->chr16:4932508-5010742:-,periplakin	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	ATF3--NSL1	2	0	ATF3	5237	chr1:212788603:+	NSL1	13142	chr1:212960979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	ATF3->Oncogene{Bushman},activating_transcription_factor_3,chr1:212738676-212794119:+,NSL1->NSL1,_MIS12_kinetochore_complex_component,chr1:212899495-212965124:-	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	BAI3--C9orf3	2	0	BAI3	4578	chr6:69349324:+	C9orf3	73774	chr9:97842976:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	BAI3->chr6:69345259-70099403:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	C20orf26--LINC00237	2	0	C20orf26	41680	chr20:20279030:+	LINC00237	50697	chr20:21074493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	C20orf26->chr20:20033158-20341346:+,LINC00237->chr20:21068245-21086999:-,long_intergenic_non-protein_coding_RNA_237	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	CCDC82--SOGA1	2	0	CCDC82	1080	chr11:96123008:-	SOGA1	23342	chr20:35467844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	CCDC82->chr11:96085933-96123087:-,coiled-coil_domain_containing_82,SOGA1->chr20:35405845-35492089:-,suppressor_of_glucose,_autophagy_associated_1	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	CLDN12--ID4	2	0	CLDN12	4838	chr7:90034926:+	ID4	26120	chr6:19838815:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	CLDN12->chr7:90013035-90142716:+,claudin_12,ID4->Oncogene{Bushman},chr6:19837617-19840915:+,inhibitor_of_DNA_binding_4,_HLH_protein	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	CPSF6--CCNL2	2	0	CPSF6	11046	chr12:69656342:+	CCNL2	25938	chr1:1326245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:5=pct:0.8],Vagina=[count:1=pct:1.8],Lung=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},GTEx_v2:{count=16;pct=0.18%;dist=Brain_-_Cerebellum=3,Lung=2,Esophagus_-_Mucosa=2,Brain_-_Cerebellar_Hemisphere=2,Vagina=1,Brain_-_Hippocampus=1,Artery_-_Coronary=1,Liver=1,Brain_-_Frontal_Cortex_(BA9)=1,Pituitary=1,Esophagus_-_Muscularis=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CCNL2->chr1:1321091-1334708:-,cyclin_L2	NCIH1105_LUNG	1	1	0.0231	TRUE	7	3	0	2	0	FALSE	ACH-000780
NCIH1105_LUNG	CTD-2231H16.1--NDUFS6	2	0	CTD-2231H16.1	1126	chr5:92391:+	NDUFS6	8681	chr5:1814453:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	CTD-2231H16.1->chr5:92266-139978:+,NDUFS6->NADH:ubiquinone_oxidoreductase_subunit_S6,chr5:1801514-1816719:+	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	EML4--QRICH1	2	0	EML4	11867	chr2:42511843:+	QRICH1	39686	chr3:49095323:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,QRICH1->chr3:49067140-49131796:-,glutamine_rich_1	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	HP1BP3--EIF4G3	2	0	HP1BP3	1129	chr1:21113688:-	EIF4G3	28440	chr1:21415706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	NCIH1105_LUNG	1	1	0.0231	TRUE	0	2	0	6	0	TRUE	ACH-000780
NCIH1105_LUNG	PIK3C2A--MAP4K5	2	0	PIK3C2A	14422	chr11:17156658:-	MAP4K5	69265	chr14:50904726:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,MAP4K5->chr14:50885219-51027844:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_5	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	POLR3H--HOXA9	2	0	POLR3H	2952	chr22:41936703:-	HOXA9	18606	chr7:27204586:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	POLR3H->chr22:41921808-41940610:-,polymerase_(RNA)_III_subunit_H,HOXA9->Oncogene{Bushman},chr7:27202054-27210117:-,homeobox_A9	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	PTPRN2--CSGALNACT2	2	0	PTPRN2	3463	chr7:158282427:-	CSGALNACT2	33089	chr10:43650345:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,CSGALNACT2->chondroitin_sulfate_N-acetylgalactosaminyltransferase_2,chr10:43633934-43680756:+	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1105_LUNG	1	1	0.0231	TRUE	477	1352	189	275	0	FALSE	ACH-000780
NCIH1105_LUNG	RP11-944L7.4--KIFAP3	2	0	RP11-944L7.4	1095	chr3:44727051:-	KIFAP3	30489	chr1:169930376:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	RP11-944L7.4->chr3:44598849-44727145:-,KIFAP3->chr1:169890467-170054349:-,kinesin_associated_protein_3	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	RP4-565E6.1--HYDIN	2	0	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1105_LUNG	1	1	0.0231	TRUE	84	87	4	41	0	FALSE	ACH-000780
NCIH1105_LUNG	SPIN1--GNAS	2	0	SPIN1	1120	chr9:91003453:+	GNAS	33527	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx&tcga_normals:1/3694=0.03%,SPIN1->chr9:91003334-91093609:+,spindlin_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1105_LUNG	1	1	0.0231	TRUE	0	1	0	4	0	TRUE	ACH-000780
NCIH1105_LUNG	WDR65--GTF2I	2	0	WDR65	1762	chr1:43638581:+	GTF2I	67691	chr7:74173110:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	WDR65->chr1:43637820-43720029:+,GTF2I->chr7:74071994-74175026:+,general_transcription_factor_IIi	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	XRN2--DROSHA	2	0	XRN2	1170	chr20:21284111:+	DROSHA	52226	chr5:31451747:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+,DROSHA->chr5:31400604-31532303:-,drosha_ribonuclease_III	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	ZNF449--AP2A2	2	0	ZNF449	2494	chrX:134481397:+	AP2A2	30354	chr11:988552:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	ZNF449->chrX:134478721-134497077:+,zinc_finger_protein_449,AP2A2->adaptor_related_protein_complex_2_alpha_2_subunit,chr11:924894-1012239:+	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	ZNF462--RAD23B	2	0	ZNF462	14221	chr9:109701388:+	RAD23B	31913	chr9:110062422:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	ZNF462->chr9:109625378-109775915:+,zinc_finger_protein_462,RAD23B->Oncogene{Bushman},RAD23_homolog_B,_nucleotide_excision_repair_protein,chr9:110045418-110094475:+	NCIH1105_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000780
NCIH1105_LUNG	AC131097.3--AC093642.5	1	3	AC131097.3	2273	chr2:242824786:+	AC093642.5	12811	chr2:243056790:+	ONLY_REF_SPLICE	NO	10	25	0.29	0.14	0.0115	0.0346	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	NCIH1105_LUNG	0.14	0.29	0.0461	FALSE	2	37	1	16	0	FALSE	ACH-000780
NCIH1105_LUNG	LINC00299--AC007464.1	1	3	LINC00299	13051	chr2:8383695:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0115	0.0346	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	NCIH1105_LUNG	0.67	1	0.0461	TRUE	2	12	0	3	0	FALSE	ACH-000780
NCIH1105_LUNG	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	12	0	0.25	1	0.0115	0.0346	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1105_LUNG	0.25	1	0.0461	FALSE	164	806	69	479	0	FALSE	ACH-000780
NCIH1105_LUNG	OAZ1--DOT1L	1	2	OAZ1	4335	chr19:2272819:+	DOT1L	27520	chr19:2216280:+	ONLY_REF_SPLICE	YES	1531	102	0	0.03	0.0115	0.0231	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[36908],OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+	NCIH1105_LUNG	0	0.03	0.0346	FALSE	0	0	0	1	0	FALSE	ACH-000780
NCIH1105_LUNG	PELI2--KTN1	1	2	PELI2	3527	chr14:56645182:+	KTN1	20452	chr14:56078737:+	ONLY_REF_SPLICE	YES	20	41	0.13	0.07	0.0115	0.0231	PELI2->chr14:56584532-56768244:+,pellino_E3_ubiquitin_protein_ligase_family_member_2,KTN1->Oncogene{Bushman},chr14:56025790-56168244:+,kinectin_1	NCIH1105_LUNG	0.07	0.13	0.0346	TRUE	0	0	0	1	0	FALSE	ACH-000780
NCIH1105_LUNG	VWDE--PHF14	1	2	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	NO	76	45	0.04	0.06	0.0115	0.0231	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1105_LUNG	0.04	0.06	0.0346	TRUE	0	6	0	17	2	TRUE	ACH-000780
NCIH1105_LUNG	CCDC171--SNAPC3	1	1	CCDC171	13824	chr9:15666321:+	SNAPC3	58994	chr9:15433550:+	ONLY_REF_SPLICE	YES	36	109	0.05	0.02	0.0115	0.0115	LOCAL_REARRANGEMENT:+:[86944],CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171,SNAPC3->Oncogene{Bushman},chr9:15422702-15465951:+,small_nuclear_RNA_activating_complex_polypeptide_3	NCIH1105_LUNG	0.02	0.05	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000780
NCIH1105_LUNG	CNOT2--RAB3IP	1	1	CNOT2	11745	chr12:70704797:+	RAB3IP	37441	chr12:70149164:+	ONLY_REF_SPLICE	NO	105	365	0.02	0.01	0.0115	0.0115	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	NCIH1105_LUNG	0.01	0.02	0.023	FALSE	0	1	0	1	1	FALSE	ACH-000780
NCIH1105_LUNG	CNOT2--RAB3IP	1	1	CNOT2	11745	chr12:70704797:+	RAB3IP	40953	chr12:70178500:+	ONLY_REF_SPLICE	YES	105	537	0.02	0	0.0115	0.0115	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	NCIH1105_LUNG	0	0.02	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000780
NCIH1105_LUNG	CPSF6--RAB3IP	1	1	CPSF6	1170	chr12:69633486:+	RAB3IP	22085	chr12:70149164:+	ONLY_REF_SPLICE	NO	86	365	0.02	0.01	0.0115	0.0115	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	NCIH1105_LUNG	0.01	0.02	0.023	FALSE	0	0	0	3	0	FALSE	ACH-000780
NCIH1105_LUNG	CUL3--ACSL3	1	1	CUL3	1450	chr2:225449661:-	ACSL3	39754	chr2:223773451:+	ONLY_REF_SPLICE	YES	59	103	0.03	0.02	0.0115	0.0115	CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3,ACSL3->Oncogene{Bushman},acyl-CoA_synthetase_long-chain_family_member_3,chr2:223725652-223809357:+	NCIH1105_LUNG	0.02	0.03	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000780
NCIH1105_LUNG	DTL--LPGAT1	1	1	DTL	1366	chr1:212209284:+	LPGAT1	25098	chr1:211966532:-	ONLY_REF_SPLICE	NO	124	71	0.02	0.03	0.0115	0.0115	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,LPGAT1->chr1:211916799-212004114:-,lysophosphatidylglycerol_acyltransferase_1	NCIH1105_LUNG	0.02	0.03	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000780
NCIH1105_LUNG	FGF14-IT1--FGF14	1	1	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	1	77	0.67	0.03	0.0115	0.0115	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	NCIH1105_LUNG	0.03	0.67	0.023	TRUE	71	201	23	28	0	FALSE	ACH-000780
NCIH1105_LUNG	GAS2L3--SCYL2	1	1	GAS2L3	10970	chr12:101005919:+	SCYL2	24794	chr12:100676721:+	ONLY_REF_SPLICE	NO	73	134	0.03	0.01	0.0115	0.0115	GAS2L3->chr12:100967461-101022064:+,growth_arrest_specific_2_like_3,SCYL2->SCY1_like_pseudokinase_2,chr12:100660918-100735502:+	NCIH1105_LUNG	0.01	0.03	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000780
NCIH1105_LUNG	GATS--PILRB	1	1	GATS	6032	chr7:99820220:-	PILRB	26430	chr7:99954373:+	ONLY_REF_SPLICE	NO	103	208	0.02	0.01	0.0115	0.0115	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	NCIH1105_LUNG	0.01	0.02	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000780
NCIH1105_LUNG	GATS--PILRB	1	1	GATS	6032	chr7:99820220:-	PILRB	27900	chr7:99955843:+	ONLY_REF_SPLICE	NO	103	214	0.02	0.01	0.0115	0.0115	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	NCIH1105_LUNG	0.01	0.02	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000780
NCIH1105_LUNG	ING1--ARHGEF7	1	1	ING1	2550	chr13:111366632:+	ARHGEF7	23057	chr13:111885552:+	ONLY_REF_SPLICE	NO	102	298	0.02	0.01	0.0115	0.0115	ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1,ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+	NCIH1105_LUNG	0.01	0.02	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000780
NCIH1105_LUNG	RP11-349A22.5--PSMA3	1	1	RP11-349A22.5	10690	chr14:58740697:-	PSMA3	23323	chr14:58724463:+	ONLY_REF_SPLICE	YES	85	522	0.02	0	0.0115	0.0115	NEIGHBORS_OVERLAP:-:+:[6647],RP11-349A22.5->chr14:58732083-58764852:-,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	NCIH1105_LUNG	0	0.02	0.023	FALSE	1	2	1	1	0	FALSE	ACH-000780
NCIH1105_LUNG	RP4-717I23.3--PRKACB	1	1	RP4-717I23.3	3640	chr1:93804914:-	PRKACB	33030	chr1:84644860:+	ONLY_REF_SPLICE	YES	38	87	0.05	0.02	0.0115	0.0115	RP4-717I23.3->chr1:93727743-93811582:-,PRKACB->chr1:84543745-84704181:+,protein_kinase_cAMP-activated_catalytic_subunit_beta	NCIH1105_LUNG	0.02	0.05	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000780
NCIH1105_LUNG	RPRD1A--IVNS1ABP	1	1	RPRD1A	10586	chr18:33606863:-	IVNS1ABP	28931	chr1:185274775:-	ONLY_REF_SPLICE	NO	177	394	0.01	0.01	0.0115	0.0115	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NCIH1105_LUNG	0.01	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000780
NCIH1105_LUNG	SEMA6A--COMMD10	1	1	SEMA6A	25677	chr5:115803279:-	COMMD10	40178	chr5:115469765:+	ONLY_REF_SPLICE	YES	23	46	0.08	0.04	0.0115	0.0115	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:-:+:[30853],SEMA6A->chr5:115779312-115910630:-,semaphorin_6A,COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+	NCIH1105_LUNG	0.04	0.08	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000780
NCIH1105_LUNG	SIPA1L3--SPINT2	1	1	SIPA1L3	3094	chr19:38423332:+	SPINT2	42588	chr19:38774267:+	ONLY_REF_SPLICE	YES	38	839	0.05	0	0.0115	0.0115	NEIGHBORS[35663],SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2	NCIH1105_LUNG	0	0.05	0.023	FALSE	0	1	0	2	0	FALSE	ACH-000780
NCIH1105_LUNG	SMG7--DHX9	1	1	SMG7	1434	chr1:183441784:+	DHX9	38081	chr1:182821368:+	ONLY_REF_SPLICE	NO	124	582	0.02	0	0.0115	0.0115	SMG7->SMG7_nonsense_mediated_mRNA_decay_factor,chr1:183441351-183567381:+,DHX9->DEAH-box_helicase_9,Oncogene{Bushman},chr1:182808504-182856886:+	NCIH1105_LUNG	0	0.02	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000780
NCIH1105_LUNG	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.0115	0.0115	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH1105_LUNG	0.11	1	0.023	FALSE	272	151	14	158	0	FALSE	ACH-000780
NCIH1105_LUNG	ZNF644--FNBP1L	1	1	ZNF644	3886	chr1:91447867:-	FNBP1L	20623	chr1:93987639:+	ONLY_REF_SPLICE	YES	67	177	0.03	0.01	0.0115	0.0115	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,FNBP1L->chr1:93913688-94020218:+,formin_binding_protein_1_like	NCIH1105_LUNG	0.01	0.03	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000780
MKN45_STOMACH	CAPZA2--AC006159.3	1227	185	CAPZA2	3371	chr7:116502704:+	AC006159.3	27753	chr7:116213798:-	ONLY_REF_SPLICE	YES	456	0	0.76	1	12.9503	1.9526	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,AC006159.3->chr7:116211014-116254874:-	MKN45_STOMACH	0.76	1	14.9029	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TIMM23B--LINC00843	158	57	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	1.6676	0.6016	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MKN45_STOMACH	1	1	2.2692	TRUE	508	994	45	981	0	FALSE	ACH-000356
MKN45_STOMACH	LINC00511--SLC39A11	136	87	LINC00511	8867	chr17:70588342:-	SLC39A11	52513	chr17:70645407:-	ONLY_REF_SPLICE	YES	53	30	0.81	0.88	1.4354	0.9182	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	MKN45_STOMACH	0.81	0.88	2.3536	TRUE	0	1	0	5	1	TRUE	ACH-000356
MKN45_STOMACH	VAV2--CCDC67	115	62	VAV2	6362	chr9:136726496:-	CCDC67	43652	chr11:93088537:+	ONLY_REF_SPLICE	YES	37	0	0.83	1	1.2138	0.6544	{Klijn_CCL:Stomach=1},VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,CCDC67->chr11:93063137-93171653:+,coiled-coil_domain_containing_67	MKN45_STOMACH	0.83	1	1.8682	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	CBL--FOXR1	110	70	CBL	1570	chr11:119077321:+	FOXR1	27279	chr11:118842623:+	INCL_NON_REF_SPLICE	YES	67	0	0.73	1	1.161	0.7388	CBL->ArcherDX_panel,Cbl_proto-oncogene,FoundationOne_panel,Oncogene{Bushman},chr11:119076752-119178859:+,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	MKN45_STOMACH	0.73	1	1.8998	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	GPBP1L1--IPP	97	101	GPBP1L1	6695	chr1:46124700:-	IPP	28389	chr1:46193470:-	ONLY_REF_SPLICE	YES	135	28	0.59	0.88	1.0238	1.066	LOCAL_REARRANGEMENT:-:[6211],GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-,IPP->chr1:46159996-46216322:-,intracisternal_A_particle-promoted_polypeptide	MKN45_STOMACH	0.59	0.88	2.0898	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TPX2--BCL2L1	106	64	TPX2	1351	chr20:30327424:+	BCL2L1	26491	chr20:30310133:-	ONLY_REF_SPLICE	YES	462	573	0.27	0.23	1.1188	0.6755	LOCAL_INVERSION:+:-:[15282],TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	MKN45_STOMACH	0.23	0.27	1.7943	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	ARID1A--RPS6KA1	85	68	ARID1A	7728	chr1:27059283:+	RPS6KA1	44902	chr1:26897940:+	ONLY_REF_SPLICE	YES	27	42	0.85	0.78	0.8971	0.7177	{Klijn_CCL:Stomach=1},ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,RPS6KA1->Oncogene{Bushman},chr1:26856252-26901521:+,ribosomal_protein_S6_kinase_A1	MKN45_STOMACH	0.78	0.85	1.6148	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	CAPZA2--AC006159.3	84	33	CAPZA2	3371	chr7:116502704:+	AC006159.3	29057	chr7:116211284:-	ONLY_REF_SPLICE	YES	456	212	0.2	0.36	0.8866	0.3483	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,AC006159.3->chr7:116211014-116254874:-	MKN45_STOMACH	0.2	0.36	1.2349	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TIMM23--RP11-464F9.1	85	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	345	1	0.21	0.99	0.8971	0.0844	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MKN45_STOMACH	0.21	0.99	0.9815	TRUE	519	3926	326	965	0	FALSE	ACH-000356
MKN45_STOMACH	TPX2--BCL2L1	29	70	TPX2	1351	chr20:30327424:+	BCL2L1	26473	chr20:30310151:-	ONLY_REF_SPLICE	YES	462	649	0.18	0.13	0.3061	0.7388	LOCAL_INVERSION:+:-:[15282],TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	MKN45_STOMACH	0.13	0.18	1.0449	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	ETNK1--RP11-268P4.5	28	26	ETNK1	6235	chr12:22814139:+	RP11-268P4.5	20978	chr12:22771419:+	ONLY_REF_SPLICE	YES	109	1	0.33	0.98	0.2955	0.2744	LOCAL_REARRANGEMENT:+:[6208],ETNK1->chr12:22778009-22843599:+,ethanolamine_kinase_1,RP11-268P4.5->chr12:22754359-22771801:+	MKN45_STOMACH	0.33	0.98	0.5699	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	NIPA2--POLA1	33	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3483	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	MKN45_STOMACH	1	1	0.3483	TRUE	46	1352	75	139	0	FALSE	ACH-000356
MKN45_STOMACH	LINC00511--SLC39A11	8	89	LINC00511	8867	chr17:70588342:-	SLC39A11	49102	chr17:70732858:-	ONLY_REF_SPLICE	YES	53	26	0.65	0.79	0.0844	0.9393	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	MKN45_STOMACH	0.65	0.79	1.0237	TRUE	0	5	0	7	4	TRUE	ACH-000356
MKN45_STOMACH	MT-TA--MT-TC	28	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2955	0.0317	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MKN45_STOMACH	1	1	0.3272	FALSE	462	80	0	856	0	FALSE	ACH-000356
MKN45_STOMACH	CBL--FOXR1	17	33	CBL	1571	chr11:119077322:+	FOXR1	28362	chr11:118849492:+	ONLY_REF_SPLICE	YES	68	0	0.42	1	0.1794	0.3483	CBL->ArcherDX_panel,Cbl_proto-oncogene,FoundationOne_panel,Oncogene{Bushman},chr11:119076752-119178859:+,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	MKN45_STOMACH	0.42	1	0.5277	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	ETNK1--RP11-268P4.5	17	33	ETNK1	6235	chr12:22814139:+	RP11-268P4.5	19859	chr12:22754286:+	INCL_NON_REF_SPLICE	NO	109	0	0.31	1	0.1794	0.3483	LOCAL_REARRANGEMENT:+:[6208],ETNK1->chr12:22778009-22843599:+,ethanolamine_kinase_1,RP11-268P4.5->chr12:22754359-22771801:+	MKN45_STOMACH	0.31	1	0.5277	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ND4L	3	86	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	7	0	0.93	1	0.0317	0.9077	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MKN45_STOMACH	0.93	1	0.9394	FALSE	344	826	44	306	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ND4L	6	73	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0633	0.7705	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MKN45_STOMACH	0.98	1	0.8338	FALSE	344	826	44	306	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ND4L	3	81	MT-ND4	1100	chrM:10859:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0317	0.8549	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MKN45_STOMACH	0.98	1	0.8866	FALSE	344	826	44	306	0	FALSE	ACH-000356
MKN45_STOMACH	PEAK1--LINGO1	19	17	PEAK1	2202	chr15:77657505:-	LINGO1	45893	chr15:77908242:-	ONLY_REF_SPLICE	YES	3	3	0.92	0.92	0.2005	0.1794	PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1,LINGO1->chr15:77905369-78113242:-,leucine_rich_repeat_and_Ig_domain_containing_1	MKN45_STOMACH	0.92	0.92	0.3799	TRUE	0	1	0	1	1	TRUE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ND4L	8	58	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	3781	0	0.02	1	0.0844	0.6122	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MKN45_STOMACH	0.02	1	0.6966	FALSE	344	827	44	306	0	FALSE	ACH-000356
MKN45_STOMACH	PCNXL2--ASXL3	20	10	PCNXL2	23458	chr1:233296029:-	ASXL3	54264	chr18:31187558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2111	0.1055	PCNXL2->chr1:233119181-233431459:-,ASXL3->additional_sex_combs_like_3,_transcriptional_regulator,chr18:31158579-31331156:+	MKN45_STOMACH	1	1	0.3166	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	LGR4--LIN7C	20	5	LGR4	2730	chr11:27434336:-	LIN7C	24990	chr11:27523467:-	ONLY_REF_SPLICE	YES	687	17	0.04	0.6	0.2111	0.0528	LOCAL_REARRANGEMENT:-:[21801],LGR4->chr11:27387508-27494322:-,leucine-rich_repeat_containing_G_protein-coupled_receptor_4,LIN7C->chr11:27516123-27528320:-,lin-7_homolog_C,_crumbs_cell_polarity_complex_component	MKN45_STOMACH	0.04	0.6	0.2639	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	HSP90AB1--MT-RNR2	20	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3556	0	0.01	1	0.2111	0.0317	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MKN45_STOMACH	0.01	1	0.2428	FALSE	13	9	0	364	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ND4L	7	50	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0739	0.5277	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MKN45_STOMACH	0.97	1	0.6016	FALSE	344	821	44	306	0	FALSE	ACH-000356
MKN45_STOMACH	RP11-123O10.4--GRIP1	16	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1689	0.0528	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MKN45_STOMACH	1	1	0.2217	FALSE	416	2512	207	587	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ND4L	3	55	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0317	0.5805	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MKN45_STOMACH	0.97	1	0.6122	FALSE	344	826	44	306	0	FALSE	ACH-000356
MKN45_STOMACH	ARID2--SCAF11	13	13	ARID2	22499	chr12:46254732:+	SCAF11	35483	chr12:46369517:-	ONLY_REF_SPLICE	YES	29	153	0.47	0.15	0.1372	0.1372	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_INVERSION:+:-:[11091],ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-	MKN45_STOMACH	0.15	0.47	0.2744	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TPX2--BCL2L1	16	1	TPX2	1077	chr20:30327150:+	BCL2L1	26491	chr20:30310133:-	INCL_NON_REF_SPLICE	YES	4	573	0.81	0.03	0.1689	0.0106	LOCAL_INVERSION:+:-:[15282],TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	MKN45_STOMACH	0.03	0.81	0.1795	TRUE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	LIN52--PAPLN	13	10	LIN52	6088	chr14:74567941:+	PAPLN	16004	chr14:73711352:+	ONLY_REF_SPLICE	YES	39	0	0.37	1	0.1372	0.1055	LIN52->chr14:74551499-74667936:+,lin-52_DREAM_MuvB_core_complex_component,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	MKN45_STOMACH	0.37	1	0.2427	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	PIGL--AC015922.5	14	5	PIGL	1271	chr17:16120775:+	AC015922.5	26044	chr17:15753738:+	ONLY_REF_SPLICE	YES	97	0	0.16	1	0.1478	0.0528	PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L,AC015922.5->chr17:15732683-15767467:+	MKN45_STOMACH	0.16	1	0.2006	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	ZC3H3--TSTA3	14	4	ZC3H3	5747	chr8:144589916:-	TSTA3	18808	chr8:144698893:-	ONLY_REF_SPLICE	YES	52	26	0.26	0.41	0.1478	0.0422	LOCAL_REARRANGEMENT:-:[71165],ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,TSTA3->chr8:144694788-144700218:-,tissue_specific_transplantation_antigen_P35B	MKN45_STOMACH	0.26	0.41	0.19	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	ETNK1--RP11-268P4.5	6	33	ETNK1	6235	chr12:22814139:+	RP11-268P4.5	19856	chr12:22754283:+	INCL_NON_REF_SPLICE	NO	109	0	0.26	1	0.0633	0.3483	LOCAL_REARRANGEMENT:+:[6208],ETNK1->chr12:22778009-22843599:+,ethanolamine_kinase_1,RP11-268P4.5->chr12:22754359-22771801:+	MKN45_STOMACH	0.26	1	0.4116	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	PEAK1--LINGO1	12	7	PEAK1	1139	chr15:77712348:-	LINGO1	45893	chr15:77908242:-	ONLY_REF_SPLICE	YES	1	3	0.95	0.86	0.1267	0.0739	PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1,LINGO1->chr15:77905369-78113242:-,leucine_rich_repeat_and_Ig_domain_containing_1	MKN45_STOMACH	0.86	0.95	0.2006	TRUE	0	1	0	1	1	TRUE	ACH-000356
MKN45_STOMACH	ARID2--SCAF11	11	10	ARID2	22499	chr12:46254732:+	SCAF11	38028	chr12:46357971:-	ONLY_REF_SPLICE	YES	29	129	0.42	0.14	0.1161	0.1055	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_INVERSION:+:-:[11091],ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-	MKN45_STOMACH	0.14	0.42	0.2216	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TBC1D22A--GRAMD4	10	12	TBC1D22A	10096	chr22:47193517:+	GRAMD4	29587	chr22:47022648:+	ONLY_REF_SPLICE	YES	17	1	0.56	0.96	0.1055	0.1267	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	MKN45_STOMACH	0.56	0.96	0.2322	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	GCN1L1--PLA2G1B	10	10	GCN1L1	42933	chr12:120567080:-	PLA2G1B	48849	chr12:120763823:-	ONLY_REF_SPLICE	YES	438	1	0.04	0.95	0.1055	0.1055	GCN1L1->chr12:120565007-120632513:-,PLA2G1B->chr12:120759914-120765592:-,phospholipase_A2_group_IB	MKN45_STOMACH	0.04	0.95	0.211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1267	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MKN45_STOMACH	1	1	0.1267	TRUE	0	0	0	434	0	FALSE	ACH-000356
MKN45_STOMACH	RP11-680G10.1--GSE1	11	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	20	1	0.39	0.1161	0.0211	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MKN45_STOMACH	0.39	1	0.1372	TRUE	465	1949	224	605	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ND4L	6	21	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	10	0	0.73	1	0.0633	0.2216	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MKN45_STOMACH	0.73	1	0.2849	FALSE	344	826	44	306	0	FALSE	ACH-000356
MKN45_STOMACH	HSP90AB1--MT-RNR2	10	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3578	0	0	1	0.1055	0.0317	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MKN45_STOMACH	0	1	0.1372	FALSE	13	9	0	364	0	FALSE	ACH-000356
MKN45_STOMACH	CDK13--C7orf10	9	5	CDK13	15106	chr7:40118450:+	C7orf10	39023	chr7:40488886:+	ONLY_REF_SPLICE	YES	55	12	0.2	0.54	0.095	0.0528	NEIGHBORS[37842],CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,C7orf10->chr7:40174575-40900362:+	MKN45_STOMACH	0.2	0.54	0.1478	FALSE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ATP8	9	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.095	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN45_STOMACH	1	1	0.095	FALSE	230	193	14	283	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND6--MT-TE	9	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.095	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MKN45_STOMACH	1	1	0.095	FALSE	499	1288	110	792	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ND4L	6	10	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	15	0	0.52	1	0.0633	0.1055	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MKN45_STOMACH	0.52	1	0.1688	FALSE	344	826	44	306	0	FALSE	ACH-000356
MKN45_STOMACH	FNBP4--NUP160	7	5	FNBP4	6363	chr11:47772468:-	NUP160	38568	chr11:47834967:-	ONLY_REF_SPLICE	YES	111	171	0.1	0.07	0.0739	0.0528	LOCAL_REARRANGEMENT:-:[10644],FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,NUP160->chr11:47799639-47870107:-,nucleoporin_160kDa	MKN45_STOMACH	0.07	0.1	0.1267	TRUE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	POLR2E--STK11	8	1	POLR2E	2696	chr19:1093903:-	STK11	26569	chr19:1227592:+	ONLY_REF_SPLICE	YES	1052	85	0.01	0.1	0.0844	0.0106	LOCAL_INVERSION:-:+:[93808],POLR2E->chr19:1086594-1095598:-,polymerase_(RNA)_II_subunit_E,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	MKN45_STOMACH	0.01	0.1	0.095	FALSE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	CLDN2--MT-RNR2	8	0	CLDN2	5806	chrX:106172487:+	MT-RNR2	10422	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0844	0	CLDN2->chrX:106143394-106174091:+,claudin_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MKN45_STOMACH	1	1	0.0844	FALSE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ATP6--MT-CO1	7	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10784	17590	0	0	0.0739	0.0422	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MKN45_STOMACH	0	0	0.1161	FALSE	183	104	9	328	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ATP8	8	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0844	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN45_STOMACH	1	1	0.0844	FALSE	230	193	14	283	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ATP8	7	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9797	6	0	0.65	0.0739	0.0422	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN45_STOMACH	0	0.65	0.1161	FALSE	231	217	16	283	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ATP8	5	8	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9410	17	0	0.43	0.0528	0.0844	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN45_STOMACH	0	0.43	0.1372	FALSE	231	217	16	283	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ATP8	7	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0739	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN45_STOMACH	1	1	0.0739	FALSE	231	205	14	283	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ATP8	5	8	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	9410	124	0	0.09	0.0528	0.0844	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN45_STOMACH	0	0.09	0.1372	FALSE	231	217	16	283	0	FALSE	ACH-000356
MKN45_STOMACH	PKM--HEXA	7	0	PKM	1708	chr15:72523457:-	HEXA	31284	chr15:72648958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0739	0	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,HEXA->chr15:72635775-72668817:-,hexosaminidase_subunit_alpha	MKN45_STOMACH	1	1	0.0739	TRUE	0	0	0	2	0	TRUE	ACH-000356
MKN45_STOMACH	AXIN1--RHBDF1	6	1	AXIN1	8836	chr16:347056:-	RHBDF1	22525	chr16:113717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0633	0.0106	AXIN1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},axin_1,chr16:337440-402673:-,RHBDF1->chr16:108058-126354:-,rhomboid_5_homolog_1_(Drosophila)	MKN45_STOMACH	1	1	0.0739	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	MT-ND6--MT-TE	6	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0633	0.0106	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MKN45_STOMACH	0.78	1	0.0739	FALSE	499	1288	110	792	0	FALSE	ACH-000356
MKN45_STOMACH	HSP90AB1--MT-RNR2	6	0	HSP90AB1	4399	chr6:44218222:+	MT-RNR2	11352	chrM:2225:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0633	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MKN45_STOMACH	1	1	0.0633	FALSE	0	0	0	11	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ND4L	3	11	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	488	0	0.03	1	0.0317	0.1161	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MKN45_STOMACH	0.03	1	0.1478	FALSE	344	827	44	306	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ND4L	3	11	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	258	0	0.05	1	0.0317	0.1161	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MKN45_STOMACH	0.05	1	0.1478	FALSE	344	827	44	306	0	FALSE	ACH-000356
MKN45_STOMACH	TPX2--BCL2L1	5	3	TPX2	1351	chr20:30327424:+	BCL2L1	28167	chr20:30253889:-	ONLY_REF_SPLICE	YES	462	725	0.02	0.01	0.0528	0.0317	LOCAL_INVERSION:+:-:[15282],TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	MKN45_STOMACH	0.01	0.02	0.0845	FALSE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ATP8	3	10	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	9722	0	0	1	0.0317	0.1055	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN45_STOMACH	0	1	0.1372	FALSE	231	217	16	283	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ATP8	5	2	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	10459	0	0	1	0.0528	0.0211	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN45_STOMACH	0	1	0.0739	FALSE	231	217	16	283	0	FALSE	ACH-000356
MKN45_STOMACH	RP11-114H23.1--RP11-114H23.2	5	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0.0211	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	MKN45_STOMACH	1	1	0.0739	FALSE	81	155	12	160	0	FALSE	ACH-000356
MKN45_STOMACH	TMX2--SMTNL1	4	5	TMX2	1208	chr11:57480279:+	SMTNL1	9627	chr11:57310114:+	ONLY_REF_SPLICE	YES	408	0	0.02	1	0.0422	0.0528	{Klijn_CCL:Stomach=1},TMX2->chr11:57480072-57508445:+,thioredoxin_related_transmembrane_protein_2,SMTNL1->chr11:57308979-57318108:+,smoothelin-like_1	MKN45_STOMACH	0.02	1	0.095	TRUE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	MKRN2--PPARG	5	0	MKRN2	1163	chr3:12598675:+	PPARG	20504	chr3:12421203:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,PPARG->Oncogene{Bushman},chr3:12328867-12475855:+,peroxisome_proliferator_activated_receptor_gamma	MKN45_STOMACH	1	1	0.0528	TRUE	0	1	0	1	1	TRUE	ACH-000356
MKN45_STOMACH	MT-ND6--MT-TE	5	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MKN45_STOMACH	1	1	0.0528	FALSE	499	1288	110	792	0	FALSE	ACH-000356
MKN45_STOMACH	RP11-97E7.1--FOXRED1	5	0	RP11-97E7.1	2311	chr4:172474370:-	FOXRED1	8526	chr11:126142474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	GTEx_FI:{Brain=[count:5=pct:0.8],Spleen=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Liver=[count:1=pct:0.8]},RP11-97E7.1->chr4:172474151-172485418:-,FOXRED1->FAD-dependent_oxidoreductase_domain_containing_1,chr11:126138950-126148026:+	MKN45_STOMACH	1	1	0.0528	TRUE	5	3	0	5	0	FALSE	ACH-000356
MKN45_STOMACH	EZH1--BECN1	4	3	EZH1	5653	chr17:40879653:-	BECN1	28810	chr17:40977249:-	ONLY_REF_SPLICE	YES	28	0	0.2	1	0.0422	0.0317	LOCAL_REARRANGEMENT:-:[65081],EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,BECN1->beclin_1,chr17:40962152-40985367:-	MKN45_STOMACH	0.2	1	0.0739	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ATP8	4	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	10274	1	0	0.86	0.0422	0.0211	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN45_STOMACH	0	0.86	0.0633	FALSE	231	217	16	283	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ATP8	3	6	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	9815	1	0	0.9	0.0317	0.0633	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN45_STOMACH	0	0.9	0.095	FALSE	231	217	16	283	0	FALSE	ACH-000356
MKN45_STOMACH	TBC1D22A--GRAMD4	4	2	TBC1D22A	10096	chr22:47193517:+	GRAMD4	34102	chr22:47058937:+	ONLY_REF_SPLICE	YES	17	34	0.26	0.15	0.0422	0.0211	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	MKN45_STOMACH	0.15	0.26	0.0633	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ATP8	3	5	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	9901	1361	0	0.01	0.0317	0.0528	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN45_STOMACH	0	0.01	0.0845	FALSE	231	217	16	283	0	FALSE	ACH-000356
MKN45_STOMACH	TPX2--BCL2L1	4	1	TPX2	1077	chr20:30327150:+	BCL2L1	26473	chr20:30310151:-	INCL_NON_REF_SPLICE	YES	4	649	0.56	0.01	0.0422	0.0106	LOCAL_INVERSION:+:-:[15282],TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	MKN45_STOMACH	0.01	0.56	0.0528	FALSE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	LIN52--PAPLN	2	8	LIN52	5004	chr14:74564563:+	PAPLN	16004	chr14:73711352:+	ONLY_REF_SPLICE	YES	60	0	0.14	1	0.0211	0.0844	LIN52->chr14:74551499-74667936:+,lin-52_DREAM_MuvB_core_complex_component,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	MKN45_STOMACH	0.14	1	0.1055	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	RP11-114H23.1--RP11-114H23.2	3	4	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0.0422	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	MKN45_STOMACH	1	1	0.0739	FALSE	81	155	12	160	0	FALSE	ACH-000356
MKN45_STOMACH	EZH1--BECN1	3	3	EZH1	5653	chr17:40879653:-	BECN1	28780	chr17:40977279:-	INCL_NON_REF_SPLICE	YES	28	0	0.18	1	0.0317	0.0317	LOCAL_REARRANGEMENT:-:[65081],EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,BECN1->beclin_1,chr17:40962152-40985367:-	MKN45_STOMACH	0.18	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0.0317	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MKN45_STOMACH	1	1	0.0634	FALSE	462	80	0	856	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ATP6--MT-CO1	3	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9004	17837	0	0	0.0317	0.0211	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MKN45_STOMACH	0	0	0.0528	FALSE	183	104	9	328	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ATP6--MT-CO1	3	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	8947	17150	0	0	0.0317	0.0211	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MKN45_STOMACH	0	0	0.0528	FALSE	183	104	9	328	0	FALSE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	11972	582	0	0.01	0.0317	0.0211	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN45_STOMACH	0	0.01	0.0528	FALSE	231	217	16	283	0	FALSE	ACH-000356
MKN45_STOMACH	PCNXL2--ASXL3	1	10	PCNXL2	23458	chr1:233296029:-	ASXL3	53142	chr18:31185501:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0106	0.1055	PCNXL2->chr1:233119181-233431459:-,ASXL3->additional_sex_combs_like_3,_transcriptional_regulator,chr18:31158579-31331156:+	MKN45_STOMACH	1	1	0.1161	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	MT-ND4--MT-ATP8	3	1	MT-ND4	1164	chrM:10923:+	MT-ATP8	5455	chrM:8442:+	INCL_NON_REF_SPLICE	YES	6770	1	0	0.8	0.0317	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN45_STOMACH	0	0.8	0.0423	FALSE	230	193	14	283	0	FALSE	ACH-000356
MKN45_STOMACH	PVT1--SNTB1	2	5	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	48	58	0.13	0.11	0.0211	0.0528	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	MKN45_STOMACH	0.11	0.13	0.0739	TRUE	0	0	0	25	0	FALSE	ACH-000356
MKN45_STOMACH	GLG1--CTRB2	3	0	GLG1	1458	chr16:74640555:-	CTRB2	37515	chr16:75239411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,CTRB2->chr16:75237994-75241083:-,chymotrypsinogen_B2	MKN45_STOMACH	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	MKRN2--PPARG	3	0	MKRN2	1163	chr3:12598675:+	PPARG	16966	chr3:12353879:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,PPARG->Oncogene{Bushman},chr3:12328867-12475855:+,peroxisome_proliferator_activated_receptor_gamma	MKN45_STOMACH	1	1	0.0317	TRUE	0	1	0	1	1	TRUE	ACH-000356
MKN45_STOMACH	NFAT5--CYB5B	3	0	NFAT5	9975	chr16:69689702:+	CYB5B	35547	chr16:69481053:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	LOCAL_REARRANGEMENT:+:[98828],NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	MKN45_STOMACH	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MKN45_STOMACH	1	1	0.0317	TRUE	0	0	0	434	0	FALSE	ACH-000356
MKN45_STOMACH	RP11-680G10.1--GSE1	2	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	14	1	0.26	0.0211	0.0317	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MKN45_STOMACH	0.26	1	0.0528	TRUE	458	1351	185	561	0	FALSE	ACH-000356
MKN45_STOMACH	TBC1D22A--GRAMD4	2	3	TBC1D22A	10096	chr22:47193517:+	GRAMD4	30798	chr22:47033737:+	ONLY_REF_SPLICE	YES	17	35	0.23	0.12	0.0211	0.0317	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	MKN45_STOMACH	0.12	0.23	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	ATAD1--PAPSS2	2	1	ATAD1	10639	chr10:89527430:-	PAPSS2	29652	chr10:89500992:+	ONLY_REF_SPLICE	YES	164	4	0.02	0.43	0.0211	0.0106	LOCAL_INVERSION:-:+:[3807],ATAD1->ATPase_family,_AAA_domain_containing_1,chr10:89511269-89601100:-,PAPSS2->3'-phosphoadenosine_5'-phosphosulfate_synthase_2,chr10:89419370-89507462:+	MKN45_STOMACH	0.02	0.43	0.0317	TRUE	0	1	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	DANCR--MRPL3	2	1	DANCR	1530	chr4:53579126:+	MRPL3	15943	chr3:131190123:-	ONLY_REF_SPLICE	YES	665	647	0	0	0.0211	0.0106	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	MKN45_STOMACH	0	0	0.0317	FALSE	0	1	0	2	0	FALSE	ACH-000356
MKN45_STOMACH	EZH1--BECN1	2	1	EZH1	5653	chr17:40879653:-	BECN1	30162	chr17:40975897:-	ONLY_REF_SPLICE	YES	28	211	0.1	0.01	0.0211	0.0106	LOCAL_REARRANGEMENT:-:[65081],EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,BECN1->beclin_1,chr17:40962152-40985367:-	MKN45_STOMACH	0.01	0.1	0.0317	FALSE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	GPR110--TNFRSF21	2	1	GPR110	6849	chr6:46989694:-	TNFRSF21	29892	chr6:47254331:-	ONLY_REF_SPLICE	YES	47	506	0.06	0.01	0.0211	0.0106	{Klijn_CCL:Stomach=1},GPR110->chr6:46965440-47010099:-,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	MKN45_STOMACH	0.01	0.06	0.0317	FALSE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0.0106	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MKN45_STOMACH	1	1	0.0317	FALSE	292	1546	117	613	0	FALSE	ACH-000356
MKN45_STOMACH	RP11-680G10.1--ZNRF1	2	1	RP11-680G10.1	1181	chr16:85391249:+	ZNRF1	11058	chr16:75127470:+	ONLY_REF_SPLICE	NO	0	138	1	0.02	0.0211	0.0106	RP11-680G10.1->chr16:85391069-85393055:+,ZNRF1->chr16:75032928-75144892:+,zinc_and_ring_finger_1,_E3_ubiquitin_protein_ligase	MKN45_STOMACH	0.02	1	0.0317	TRUE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	RP11-712B9.2--CTD-3138F19.1	2	1	RP11-712B9.2	3662	chr11:94890967:+	CTD-3138F19.1	16345	chr11:29903029:+	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0211	0.0106	RP11-712B9.2->chr11:94883703-94967268:+,CTD-3138F19.1->chr11:29735456-29903261:+	MKN45_STOMACH	0.43	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	ANXA4--INTS6	2	0	ANXA4	10899	chr2:70033630:+	INTS6	30369	chr13:52026191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ANXA4->annexin_A4,chr2:69871557-70053596:+,INTS6->Oncogene{Bushman},chr13:51928213-52028400:-,integrator_complex_subunit_6	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	ARID2--SCAF11	1	4	ARID2	21350	chr12:46246679:+	SCAF11	38028	chr12:46357971:-	ONLY_REF_SPLICE	YES	41	129	0.11	0.04	0.0106	0.0422	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_INVERSION:+:-:[11091],ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-	MKN45_STOMACH	0.04	0.11	0.0528	TRUE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	CDK18--SP1	2	0	CDK18	1202	chr1:205473924:+	SP1	19817	chr12:53775443:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CDK18->Oncogene{Bushman},chr1:205473723-205501921:+,cyclin-dependent_kinase_18,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	DANCR--GNB1	2	0	DANCR	1530	chr4:53579126:+	GNB1	9431	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	8	0	TRUE	ACH-000356
MKN45_STOMACH	FAM162A--CDV3	2	0	FAM162A	1124	chr3:122103146:+	CDV3	14103	chr3:133293883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	FAM162A->chr3:122103023-122131181:+,family_with_sequence_similarity_162_member_A,CDV3->CDV3_homolog,chr3:133292574-133309105:+	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	GNG7--GNAS	2	0	GNG7	3333	chr19:2646222:-	GNAS	30398	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GNG7->G_protein_subunit_gamma_7,chr19:2511217-2702707:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	KIDINS220--EIF2S3	2	0	KIDINS220	22273	chr2:8918769:-	EIF2S3	57258	chrX:24094839:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	KIDINS220->chr2:8865408-8977760:-,kinase_D-interacting_substrate_220kDa,EIF2S3->chrX:24072833-24096088:+,eukaryotic_translation_initiation_factor_2_subunit_gamma	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	LINC00511--SLC39A11	2	0	LINC00511	3455	chr17:70614455:-	SLC39A11	52513	chr17:70645407:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	NBPF3--ING2	2	0	NBPF3	4182	chr1:21771712:+	ING2	32852	chr4:184431435:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	NBPF3->chr1:21766621-21811498:+,neuroblastoma_breakpoint_family_member_3,ING2->Oncogene{Bushman},chr4:184426147-184432249:+,inhibitor_of_growth_family_member_2	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	PIF1--SPG21	2	0	PIF1	1100	chr15:65117768:-	SPG21	17641	chr15:65275931:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PIF1->PIF1_5'-to-3'_DNA_helicase,chr15:65107831-65117867:-,SPG21->chr15:65255362-65282648:-,spastic_paraplegia_21_(autosomal_recessive,_Mast_syndrome)	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	PPCDC--CPLX3	2	0	PPCDC	2354	chr15:75320794:+	CPLX3	16278	chr15:75122471:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PPCDC->chr15:75315896-75409803:+,phosphopantothenoylcysteine_decarboxylase,CPLX3->chr15:75118888-75124141:+,complexin_3	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	SETD8--CDK2AP1	2	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	18	0	TRUE	ACH-000356
MKN45_STOMACH	SNX13--ZNRF2	2	0	SNX13	1218	chr7:17979907:-	ZNRF2	48749	chr7:30363258:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SNX13->chr7:17830385-17980124:-,sorting_nexin_13,ZNRF2->chr7:30323923-30452118:+,zinc_and_ring_finger_2,_E3_ubiquitin_protein_ligase	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	SOS2--POLE2	2	0	SOS2	11899	chr14:50628200:-	POLE2	36166	chr14:50141145:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-,POLE2->chr14:50110273-50155140:-,polymerase_(DNA)_epsilon_2,_accessory_subunit	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TBC1D15--RAB21	2	0	TBC1D15	1105	chr12:72233591:+	RAB21	32073	chr12:72163580:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_REARRANGEMENT:+:[48788],TBC1D15->TBC1_domain_family_member_15,chr12:72233487-72320629:+,RAB21->RAB21,_member_RAS_oncogene_family,chr12:72148654-72184699:+	MKN45_STOMACH	1	1	0.0211	TRUE	0	1	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TGOLN2--GGCX	2	0	TGOLN2	1509	chr2:85555040:-	GGCX	15042	chr2:85786198:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	TGOLN2->chr2:85545147-85555548:-,trans-golgi_network_protein_2,GGCX->chr2:85771846-85788670:-,gamma-glutamyl_carboxylase	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TSC22D2--SERP1	2	0	TSC22D2	3974	chr3:150129095:+	SERP1	28191	chr3:150262285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_INVERSION:+:-:[75563],TSC22D2->TSC22_domain_family_member_2,chr3:150126122-150184218:+,SERP1->chr3:150259781-150321015:-,stress-associated_endoplasmic_reticulum_protein_1	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	URGCP--HP1BP3	2	0	URGCP	1280	chr7:43965731:-	HP1BP3	24903	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	URGCP->chr7:43915493-43966010:-,upregulator_of_cell_proliferation,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	WDR59--CNOT1	2	0	WDR59	3538	chr16:75018862:-	CNOT1	42875	chr16:58633415:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-,CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	YWHAE--ABR	2	0	YWHAE	1332	chr17:1303341:-	ABR	26806	chr17:1003975:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	MKN45_STOMACH	1	1	0.0211	TRUE	0	0	0	4	0	TRUE	ACH-000356
MKN45_STOMACH	EZH1--BECN1	1	3	EZH1	5653	chr17:40879653:-	BECN1	27719	chr17:40979358:-	ONLY_REF_SPLICE	YES	28	0	0.12	1	0.0106	0.0317	LOCAL_REARRANGEMENT:-:[65081],EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,BECN1->beclin_1,chr17:40962152-40985367:-	MKN45_STOMACH	0.12	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	TBC1D22A--GRAMD4	1	3	TBC1D22A	10096	chr22:47193517:+	GRAMD4	31919	chr22:47054084:+	ONLY_REF_SPLICE	NO	17	43	0.19	0.09	0.0106	0.0317	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	MKN45_STOMACH	0.09	0.19	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	FOXJ3--YBX1	1	2	FOXJ3	5272	chr1:42776721:-	YBX1	26420	chr1:43159161:+	ONLY_REF_SPLICE	YES	183	1282	0.02	0	0.0106	0.0211	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,YBX1->Oncogene{Bushman},Y-box_binding_protein_1,chr1:43148098-43168020:+	MKN45_STOMACH	0	0.02	0.0317	FALSE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	GAPDH--NCAPD2	1	2	GAPDH	3840	chr12:6645956:+	NCAPD2	17876	chr12:6630152:+	ONLY_REF_SPLICE	YES	10074	389	0	0.01	0.0106	0.0211	LOCAL_REARRANGEMENT:+:[1972],GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,NCAPD2->Oncogene{Bushman},chr12:6602522-6641121:+,non-SMC_condensin_I_complex_subunit_D2	MKN45_STOMACH	0	0.01	0.0317	FALSE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	LIN52--PAPLN	1	2	LIN52	6088	chr14:74567941:+	PAPLN	18744	chr14:73716692:+	ONLY_REF_SPLICE	YES	39	3	0.07	0.5	0.0106	0.0211	LIN52->chr14:74551499-74667936:+,lin-52_DREAM_MuvB_core_complex_component,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	MKN45_STOMACH	0.07	0.5	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	NCKAP5--CXorf22	1	2	NCKAP5	7838	chr2:133887550:-	CXorf22	35571	chrX:35944134:+	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0106	0.0211	NCKAP5->NCK_associated_protein_5,chr2:133429374-134326034:-,CXorf22->chrX:35937851-36008269:+	MKN45_STOMACH	0.3	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	5	0	0.38	1	0.0106	0.0211	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MKN45_STOMACH	0.38	1	0.0317	FALSE	164	806	69	479	0	FALSE	ACH-000356
MKN45_STOMACH	TSEN2--PPARG	1	2	TSEN2	13684	chr3:12573158:+	PPARG	30395	chr3:12434113:+	ONLY_REF_SPLICE	YES	62	468	0.05	0.01	0.0106	0.0211	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},YOSHIHARA_TCGA_num_samples[BLCA:3],LOCAL_REARRANGEMENT:+:[50076],TSEN2->chr3:12525931-12581122:+,tRNA_splicing_endonuclease_subunit_2,PPARG->Oncogene{Bushman},chr3:12328867-12475855:+,peroxisome_proliferator_activated_receptor_gamma	MKN45_STOMACH	0.01	0.05	0.0317	FALSE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	ARHGAP12--KIF5B	1	1	ARHGAP12	9613	chr10:32128565:-	KIF5B	47616	chr10:32300444:-	ONLY_REF_SPLICE	YES	102	341	0.02	0.01	0.0106	0.0106	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[80196],ARHGAP12->Rho_GTPase_activating_protein_12,chr10:32094365-32217742:-,KIF5B->chr10:32297938-32345359:-,kinesin_family_member_5B	MKN45_STOMACH	0.01	0.02	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	CTD-2152M20.2--GOLPH3	1	1	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	45	1	0.04	0.0106	0.0106	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	MKN45_STOMACH	0.04	1	0.0212	TRUE	10	26	2	24	0	FALSE	ACH-000356
MKN45_STOMACH	CTD-3138B18.5--DCTD	1	1	CTD-3138B18.5	1286	chr19:58789889:-	DCTD	10067	chr4:183836728:-	ONLY_REF_SPLICE	YES	17	74	0.11	0.03	0.0106	0.0106	CTD-3138B18.5->chr19:58768639-58790174:-,DCTD->chr4:183811213-183839089:-,dCMP_deaminase	MKN45_STOMACH	0.03	0.11	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	GAB2--B3GNT6	1	1	GAB2	4989	chr11:78029189:-	B3GNT6	25675	chr11:76750596:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0106	0.0106	GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,B3GNT6->Oncogene{Bushman},UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_6,chr11:76745385-76753096:+	MKN45_STOMACH	0.67	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	GPR126--VTA1	1	1	GPR126	2987	chr6:142630781:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	YES	137	233	0.01	0.01	0.0106	0.0106	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	MKN45_STOMACH	0.01	0.01	0.0212	FALSE	0	2	0	15	1	FALSE	ACH-000356
MKN45_STOMACH	HNRNPR--ASAP3	1	1	HNRNPR	4150	chr1:23664247:-	ASAP3	31370	chr1:23765327:-	ONLY_REF_SPLICE	YES	800	0	0	1	0.0106	0.0106	LOCAL_REARRANGEMENT:-:[84227],HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,ASAP3->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_3,chr1:23755056-23811061:-	MKN45_STOMACH	0	1	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	HTRA1--BTBD16	1	1	HTRA1	1600	chr10:124221640:+	BTBD16	18664	chr10:124049424:+	ONLY_REF_SPLICE	NO	34	1	0.06	0.67	0.0106	0.0106	HTRA1->HtrA_serine_peptidase_1,Oncogene{Bushman},chr10:124221041-124274424:+,BTBD16->BTB_domain_containing_16,chr10:124030821-124097677:+	MKN45_STOMACH	0.06	0.67	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	HTRA1--BTBD16	1	1	HTRA1	1600	chr10:124221640:+	BTBD16	14234	chr10:124034555:+	ONLY_REF_SPLICE	NO	34	0	0.06	1	0.0106	0.0106	HTRA1->HtrA_serine_peptidase_1,Oncogene{Bushman},chr10:124221041-124274424:+,BTBD16->BTB_domain_containing_16,chr10:124030821-124097677:+	MKN45_STOMACH	0.06	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	MED25--ARPC1A	1	1	MED25	1335	chr19:50321873:+	ARPC1A	30915	chr7:98983325:+	ONLY_REF_SPLICE	YES	150	0	0.01	1	0.0106	0.0106	MED25->chr19:50321539-50342073:+,mediator_complex_subunit_25,ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+	MKN45_STOMACH	0.01	1	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	MKRN2--PPARG	1	1	MKRN2	4779	chr3:12613872:+	PPARG	16966	chr3:12353879:+	ONLY_REF_SPLICE	YES	120	30	0.02	0.06	0.0106	0.0106	MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,PPARG->Oncogene{Bushman},chr3:12328867-12475855:+,peroxisome_proliferator_activated_receptor_gamma	MKN45_STOMACH	0.02	0.06	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	MRPL34--HMGA1	1	1	MRPL34	1246	chr19:17403663:+	HMGA1	11789	chr6:34208514:+	ONLY_REF_SPLICE	YES	12	71	0.14	0.03	0.0106	0.0106	MRPL34->chr19:17403418-17417652:+,mitochondrial_ribosomal_protein_L34,HMGA1->Oncogene{Bushman},chr6:34204650-34214008:+,high_mobility_group_AT-hook_1	MKN45_STOMACH	0.03	0.14	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000356
MKN45_STOMACH	PXMP2--NUMB	1	1	PXMP2	2662	chr12:133266962:+	NUMB	20775	chr14:73876776:-	ONLY_REF_SPLICE	YES	50	11	0.04	0.15	0.0106	0.0106	PXMP2->chr12:133264192-133297276:+,peroxisomal_membrane_protein_2,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	MKN45_STOMACH	0.04	0.15	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000356
MKN45_STOMACH	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0106	0.0106	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MKN45_STOMACH	0.5	1	0.0212	FALSE	407	2205	196	549	0	FALSE	ACH-000356
MKN45_STOMACH	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0106	0.0106	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MKN45_STOMACH	0.5	1	0.0212	FALSE	515	4851	409	746	0	FALSE	ACH-000356
MKN45_STOMACH	TES--ST7	1	1	TES	1242	chr7:115850788:+	ST7	24312	chr7:116759615:+	ONLY_REF_SPLICE	YES	1729	416	0	0	0.0106	0.0106	TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7	MKN45_STOMACH	0	0	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000356
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	325	81	MT-ND4	1170	chrM:10929:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	41	3	0.91	0.99	2.8799	0.7178	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.91	0.99	3.5977	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TN	174	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5418	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL40_LARGE_INTESTINE	1	1	1.5418	FALSE	369	2501	205	193	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	122	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0811	0.0177	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	1	1	1.0988	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TC	108	19	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.957	0.1684	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CL40_LARGE_INTESTINE	1	1	1.1254	FALSE	462	80	0	856	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	18	248	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	48	0	0.85	1	0.1595	2.1976	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.85	1	2.3571	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	19	229	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	39	0	0.86	1	0.1684	2.0292	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.86	1	2.1976	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	10	265	MT-ND4	1724	chrM:11483:+	MT-ND4L	5482	chrM:10573:+	INCL_NON_REF_SPLICE	YES	3469	0	0.07	1	0.0886	2.3482	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.07	1	2.4368	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	14	247	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	46	0	0.85	1	0.1241	2.1887	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.85	1	2.3128	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	13	241	MT-ND4	1216	chrM:10975:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	37	3	0.87	0.99	0.1152	2.1355	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.87	0.99	2.2507	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	9	252	MT-ND4	1285	chrM:11044:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	48	0	0.84	1	0.0798	2.233	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.84	1	2.3128	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	8	249	MT-ND4	1222	chrM:10981:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	38	0	0.87	1	0.0709	2.2064	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.87	1	2.2773	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	262	MT-ND4	1478	chrM:11237:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	327	0	0.45	1	0.0266	2.3216	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.45	1	2.3482	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	261	MT-ND4	1459	chrM:11218:+	MT-ND4L	5475	chrM:10566:+	INCL_NON_REF_SPLICE	YES	273	0	0.49	1	0.0266	2.3128	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.49	1	2.3394	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	249	MT-ND4	1285	chrM:11044:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	48	2	0.84	0.99	0.0532	2.2064	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.84	0.99	2.2596	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	246	MT-ND4	1209	chrM:10968:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	43	2	0.85	0.99	0.0532	2.1798	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.85	0.99	2.233	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	249	MT-ND4	1222	chrM:10981:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	38	0	0.87	1	0.0443	2.2064	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.87	1	2.2507	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	250	MT-ND4	1263	chrM:11022:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	43	0	0.86	1	0.0354	2.2153	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.86	1	2.2507	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	252	MT-ND4	1299	chrM:11058:+	MT-ND4L	5462	chrM:10553:+	INCL_NON_REF_SPLICE	YES	56	0	0.82	1	0.0266	2.233	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.82	1	2.2596	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	241	MT-ND4	1209	chrM:10968:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	43	3	0.85	0.99	0.0443	2.1355	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.85	0.99	2.1798	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	240	MT-ND4	1192	chrM:10951:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	YES	46	3	0.84	0.99	0.0443	2.1267	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.84	0.99	2.171	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	243	MT-ND4	1180	chrM:10939:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	46	0	0.84	1	0.0354	2.1533	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.84	1	2.1887	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	246	MT-ND4	1187	chrM:10946:+	MT-ND4L	5461	chrM:10552:+	INCL_NON_REF_SPLICE	YES	45	0	0.85	1	0.0266	2.1798	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.85	1	2.2064	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	232	MT-ND4	1159	chrM:10918:+	MT-ND4L	5503	chrM:10594:+	INCL_NON_REF_SPLICE	YES	39	1	0.86	1	0.0532	2.0558	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.86	1	2.109	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	228	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	38	1	0.86	1	0.062	2.0203	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.86	1	2.0823	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	9	218	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	26	3	0.9	0.99	0.0798	1.9317	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.9	0.99	2.0115	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	222	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	31	1	0.88	1	0.062	1.9672	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.88	1	2.0292	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	215	MT-ND4	1100	chrM:10859:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	YES	25	3	0.9	0.99	0.062	1.9051	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.9	0.99	1.9671	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	222	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	34	3	0.87	0.99	0.0443	1.9672	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.87	0.99	2.0115	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	224	MT-ND4	1122	chrM:10881:+	MT-ND4L	5515	chrM:10606:+	INCL_NON_REF_SPLICE	YES	31	2	0.88	0.99	0.0266	1.9849	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.88	0.99	2.0115	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	222	MT-ND4	1114	chrM:10873:+	MT-ND4L	5509	chrM:10600:+	INCL_NON_REF_SPLICE	YES	31	1	0.88	1	0.0266	1.9672	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.88	1	1.9938	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND5--MT-ATP8	57	4	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5103	22	0.01	0.73	0.5051	0.0354	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0.01	0.73	0.5405	FALSE	43	37	8	105	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	TIMM23B--LINC00843	53	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4696	0.1772	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CL40_LARGE_INTESTINE	1	1	0.6468	TRUE	508	994	45	981	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	49	32	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	46	1	0.64	0.99	0.4342	0.2836	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.64	0.99	0.7178	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	18	151	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	16	3	0.91	0.98	0.1595	1.338	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.91	0.98	1.4975	FALSE	344	821	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	202	MT-ND4	1092	chrM:10851:+	MT-ND4L	5537	chrM:10628:+	INCL_NON_REF_SPLICE	YES	24	2	0.9	0.99	0.0266	1.79	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.9	0.99	1.8166	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	8	181	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	21	3	0.9	0.98	0.0709	1.6039	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.9	0.98	1.6748	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	13	154	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	43	3	0.8	0.98	0.1152	1.3646	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.8	0.98	1.4798	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	11	160	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	52	2	0.77	0.99	0.0975	1.4178	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.77	0.99	1.5153	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	13	151	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	28	2	0.85	0.99	0.1152	1.338	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.85	0.99	1.4532	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	8	161	MT-ND4	1178	chrM:10937:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	46	2	0.79	0.99	0.0709	1.4266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.79	0.99	1.4975	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	177	MT-ND4	1285	chrM:11044:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	48	2	0.79	0.99	0.0354	1.5684	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.79	0.99	1.6038	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	176	MT-ND4	1195	chrM:10954:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	48	2	0.79	0.99	0.0354	1.5596	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.79	0.99	1.595	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	47	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4165	0.0354	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	1	1	0.4519	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	NPM1P24--SET	47	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4165	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CL40_LARGE_INTESTINE	1	1	0.4165	TRUE	0	0	0	434	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	31	62	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	541	1	0.15	0.99	0.2747	0.5494	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.15	0.99	0.8241	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	9	148	MT-ND4	1164	chrM:10923:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	40	3	0.8	0.98	0.0798	1.3114	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.8	0.98	1.3912	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TN	18	111	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1595	0.9836	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL40_LARGE_INTESTINE	1	1	1.1431	FALSE	369	2501	205	193	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TC	44	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3899	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CL40_LARGE_INTESTINE	1	1	0.3899	FALSE	462	80	0	856	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	146	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	59	2	0.72	0.99	0.062	1.2937	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.72	0.99	1.3557	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TC	39	17	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3456	0.1506	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CL40_LARGE_INTESTINE	1	1	0.4962	FALSE	462	80	0	856	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	146	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	55	2	0.73	0.99	0.0532	1.2937	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.73	0.99	1.3469	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	155	MT-ND4	1289	chrM:11048:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	51	3	0.76	0.98	0.0266	1.3735	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.76	0.98	1.4001	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	37	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	6	0	0.9	1	0.3279	0.1418	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	0.9	1	0.4697	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	136	MT-ND4	1131	chrM:10890:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	33	2	0.81	0.99	0.0532	1.2051	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.81	0.99	1.2583	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	143	MT-ND4	1151	chrM:10910:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	39	3	0.79	0.98	0.0266	1.2671	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.79	0.98	1.2937	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	11	108	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	40	3	0.75	0.98	0.0975	0.957	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.75	0.98	1.0545	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	21	63	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	12848	1	0.01	0.99	0.1861	0.5583	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.01	0.99	0.7444	FALSE	328	800	43	304	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	122	MT-ND4	1220	chrM:10979:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	36	2	0.78	0.98	0.0532	1.0811	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.78	0.98	1.1343	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	AC104389.28--HBE1	31	21	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	8	0	0.87	1	0.2747	0.1861	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CL40_LARGE_INTESTINE	0.87	1	0.4608	TRUE	0	48	0	65	48	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TN	26	39	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2304	0.3456	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL40_LARGE_INTESTINE	1	1	0.576	FALSE	369	2501	205	193	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	8	108	MT-ND4	1231	chrM:10990:+	MT-ND4L	5632	chrM:10723:+	INCL_NON_REF_SPLICE	YES	40	3	0.74	0.97	0.0709	0.957	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.74	0.97	1.0279	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TN	16	76	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1418	0.6734	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL40_LARGE_INTESTINE	1	1	0.8152	FALSE	369	2501	205	193	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	110	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	50	3	0.7	0.97	0.062	0.9747	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.7	0.97	1.0367	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	20	58	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	46	1	0.63	0.99	0.1772	0.5139	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.63	0.99	0.6911	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	125	MT-ND4	1503	chrM:11262:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	418	3	0.23	0.98	0.0266	1.1076	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.23	0.98	1.1342	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	8	104	MT-ND4	1144	chrM:10903:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	34	3	0.77	0.97	0.0709	0.9216	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.77	0.97	0.9925	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TN	18	58	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1595	0.5139	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL40_LARGE_INTESTINE	1	1	0.6734	FALSE	369	2501	205	193	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	106	MT-ND4	1144	chrM:10903:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	34	3	0.77	0.97	0.0443	0.9393	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.77	0.97	0.9836	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND5--MT-ATP8	29	9	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	7	0	0.84	1	0.257	0.0798	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0.84	1	0.3368	FALSE	43	37	8	105	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	25	24	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	13	3	0.79	0.94	0.2215	0.2127	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.79	0.94	0.4342	FALSE	344	821	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	107	MT-ND4	1513	chrM:11272:+	MT-ND4L	5634	chrM:10725:+	INCL_NON_REF_SPLICE	YES	495	3	0.18	0.97	0.0354	0.9481	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.18	0.97	0.9835	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	19	41	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	45	1	0.57	0.98	0.1684	0.3633	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.57	0.98	0.5317	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	20	36	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	43	1	0.57	0.98	0.1772	0.319	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.57	0.98	0.4962	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	83	MT-ND4	1209	chrM:10968:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	YES	43	1	0.67	0.99	0.0532	0.7355	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.67	0.99	0.7887	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TN	17	38	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1506	0.3367	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL40_LARGE_INTESTINE	1	1	0.4873	FALSE	369	2501	205	193	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	91	MT-ND4	1112	chrM:10871:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	28	3	0.77	0.97	0.0266	0.8064	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.77	0.97	0.833	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	11	58	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	48	1	0.59	0.99	0.0975	0.5139	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.59	0.99	0.6114	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	73	MT-ND4	1180	chrM:10939:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	YES	46	1	0.63	0.99	0.062	0.6469	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.63	0.99	0.7089	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	TIMM23--RP11-464F9.1	25	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2215	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CL40_LARGE_INTESTINE	1	1	0.2215	TRUE	519	3926	326	965	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	70	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	9	0	0.9	1	0.062	0.6203	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.9	1	0.6823	FALSE	344	821	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	15	36	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	37	1	0.58	0.98	0.1329	0.319	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.58	0.98	0.4519	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TN	24	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2127	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL40_LARGE_INTESTINE	1	1	0.2127	FALSE	369	2501	205	193	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	83	MT-ND4	1116	chrM:10875:+	MT-ND4L	5641	chrM:10732:+	INCL_NON_REF_SPLICE	YES	31	3	0.74	0.97	0.0266	0.7355	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.74	0.97	0.7621	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TN	23	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2038	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL40_LARGE_INTESTINE	1	1	0.2038	FALSE	369	2501	205	193	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	10	51	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	16	3	0.79	0.95	0.0886	0.4519	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.79	0.95	0.5405	FALSE	344	821	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	13	37	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	629	1	0.07	0.98	0.1152	0.3279	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.07	0.98	0.4431	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	19	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	48	0	0.4	1	0.1684	0.1152	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.4	1	0.2836	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ATP6--MT-ND1	21	2	MT-ATP6	1200	chrM:8726:+	MT-ND1	4979	chrM:3604:+	INCL_NON_REF_SPLICE	YES	14658	9782	0	0	0.1861	0.0177	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CL40_LARGE_INTESTINE	0	0	0.2038	FALSE	78	55	12	7	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	68	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	8	0	0.9	1	0.0354	0.6026	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.9	1	0.638	FALSE	344	821	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	56	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	40	1	0.61	0.98	0.062	0.4962	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.61	0.98	0.5582	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	14	27	MT-ND4	1093	chrM:10852:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	24	1	0.63	0.98	0.1241	0.2393	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.63	0.98	0.3634	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	62	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	5146	1	0.01	0.99	0.0443	0.5494	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.01	0.99	0.5937	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	58	MT-ND4	1209	chrM:10968:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	43	1	0.6	0.98	0.0532	0.5139	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.6	0.98	0.5671	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	11	37	MT-ND4	1447	chrM:11206:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	239	1	0.17	0.98	0.0975	0.3279	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.17	0.98	0.4254	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	69	MT-ND4	1125	chrM:10884:+	MT-ND4L	5651	chrM:10742:+	INCL_NON_REF_SPLICE	YES	33	1	0.69	0.99	0.0266	0.6114	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.69	0.99	0.638	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	11	36	MT-ND4	1195	chrM:10954:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	48	1	0.49	0.98	0.0975	0.319	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.49	0.98	0.4165	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND5--MT-ATP8	19	3	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6777	76	0	0.22	0.1684	0.0266	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	0.22	0.195	FALSE	43	37	8	105	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	58	MT-ND4	1201	chrM:10960:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	50	1	0.56	0.98	0.0443	0.5139	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.56	0.98	0.5582	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	57	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	6	1	0.91	0.98	0.0354	0.5051	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.91	0.98	0.5405	FALSE	344	821	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	53	MT-ND4	1073	chrM:10832:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	16	2	0.78	0.97	0.0443	0.4696	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.78	0.97	0.5139	FALSE	344	821	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	9	37	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	325	1	0.12	0.98	0.0798	0.3279	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.12	0.98	0.4077	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	17	5	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1506	0.0443	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CL40_LARGE_INTESTINE	1	1	0.1949	FALSE	81	155	12	160	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND3--MT-ATP8	18	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1595	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	1	1	0.1595	FALSE	351	233	23	137	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	56	MT-ND4	1144	chrM:10903:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	34	1	0.64	0.98	0.0354	0.4962	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.64	0.98	0.5316	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TN	3	60	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0.5317	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL40_LARGE_INTESTINE	1	1	0.5583	FALSE	369	2501	205	193	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	58	MT-ND4	1216	chrM:10975:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	37	1	0.62	0.98	0.0266	0.5139	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.62	0.98	0.5405	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	58	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	42	1	0.59	0.98	0.0266	0.5139	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.59	0.98	0.5405	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TN	4	52	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0.4608	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL40_LARGE_INTESTINE	1	1	0.4962	FALSE	369	2501	205	193	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	8	35	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	40	1	0.52	0.98	0.0709	0.3101	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.52	0.98	0.381	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	13	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	51	0	0.34	1	0.1152	0.1152	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.34	1	0.2304	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	9	27	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	8	0	0.82	1	0.0798	0.2393	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	0.82	1	0.3191	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	10	22	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	12	0	0.73	1	0.0886	0.1949	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	0.73	1	0.2835	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	15	1	MT-ND4	1151	chrM:10910:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	NO	10307	275	0	0.05	0.1329	0.0089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	0.05	0.1418	FALSE	230	193	14	283	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TN	15	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1329	0.0089	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL40_LARGE_INTESTINE	1	1	0.1418	FALSE	369	2501	205	193	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	48	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	24	1	0.68	0.98	0.0266	0.4253	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.68	0.98	0.4519	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	AC104389.28--HBE1	9	23	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	8	0	0.8	1	0.0798	0.2038	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CL40_LARGE_INTESTINE	0.8	1	0.2836	TRUE	0	35	0	55	35	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	35	MT-ND4	1114	chrM:10873:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	31	1	0.57	0.98	0.0532	0.3101	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.57	0.98	0.3633	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	14	1	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	9	1	0.62	0.94	0.1241	0.0089	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.62	0.94	0.133	FALSE	344	821	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	36	MT-ND4	1303	chrM:11062:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	56	1	0.42	0.98	0.0443	0.319	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.42	0.98	0.3633	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	8	23	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0709	0.2038	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	1	1	0.2747	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND5--MT-ATP8	11	10	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0975	0.0886	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	1	1	0.1861	FALSE	43	37	8	105	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	7	26	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	6	0	0.85	1	0.062	0.2304	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	0.85	1	0.2924	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TN	13	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1152	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL40_LARGE_INTESTINE	1	1	0.1152	FALSE	369	2501	205	193	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	C15orf57--CBX3	11	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	47	19	0.24	0.44	0.0975	0.0354	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CL40_LARGE_INTESTINE	0.24	0.44	0.1329	TRUE	267	562	48	632	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	36	MT-ND4	1170	chrM:10929:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	41	1	0.49	0.97	0.0266	0.319	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.49	0.97	0.3456	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	12	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1063	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	1	1	0.1063	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	11	1	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	10307	0	0	1	0.0975	0.0089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	1	0.1064	FALSE	230	193	14	283	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	9	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0798	0.0798	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CL40_LARGE_INTESTINE	1	1	0.1596	FALSE	515	4851	409	746	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	10	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0886	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	1	1	0.0886	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TC	4	23	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0.2038	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CL40_LARGE_INTESTINE	1	1	0.2392	FALSE	462	80	0	856	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	51	0	0.27	1	0.0532	0.1152	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.27	1	0.1684	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	5	17	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	6	0	0.79	1	0.0443	0.1506	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	0.79	1	0.1949	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND5--MT-ATP8	8	4	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	6554	0	0	1	0.0709	0.0354	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	1	0.1063	FALSE	43	37	8	105	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	3	24	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	6	0	0.82	1	0.0266	0.2127	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	0.82	1	0.2393	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	4	19	MT-ND6	1096	chrM:14578:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0354	0.1684	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	0.96	1	0.2038	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	13	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	50	0	0.26	1	0.0443	0.1152	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.26	1	0.1595	FALSE	344	826	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	13	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	38	0	0.32	1	0.0443	0.1152	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.32	1	0.1595	FALSE	344	827	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TC	5	13	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0.1152	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CL40_LARGE_INTESTINE	1	1	0.1595	FALSE	462	80	0	856	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	8	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5337	77	0	0.15	0.0532	0.0709	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	0.15	0.1241	FALSE	218	210	16	281	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	8	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2496	77	0.01	0.15	0.0532	0.0709	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0.01	0.15	0.1241	FALSE	216	209	16	281	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	8	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0709	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	1	1	0.0709	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	REV3L--RPL28	8	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0709	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CL40_LARGE_INTESTINE	1	1	0.0709	TRUE	22	156	2	142	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MUC2--MT-CO1	7	3	MUC2	18171	chr11:1093045:+	MT-CO1	33001	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3157	21529	0	0	0.062	0.0266	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CL40_LARGE_INTESTINE	0	0	0.0886	FALSE	0	0	0	2	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND5--MT-ATP8	5	10	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0.0886	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	1	1	0.1329	FALSE	43	37	8	105	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	3	18	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.0266	0.1595	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	0.91	1	0.1861	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	5	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0.0798	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CL40_LARGE_INTESTINE	1	1	0.1241	FALSE	467	2173	244	435	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15390	22	0	0.31	0.0532	0.0354	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	0.31	0.0886	FALSE	231	217	16	283	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	4	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0.1063	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CL40_LARGE_INTESTINE	1	1	0.1417	FALSE	407	2205	196	549	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	7	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	15292	0	0	1	0.0443	0.062	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	1	0.1063	FALSE	231	217	16	283	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MUC2--MT-CO1	6	3	MUC2	18575	chr11:1093449:+	MT-CO1	33040	chrM:6596:+	INCL_NON_REF_SPLICE	YES	505	21002	0.02	0	0.0532	0.0266	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CL40_LARGE_INTESTINE	0	0.02	0.0798	FALSE	0	0	0	2	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	6	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	14720	197	0	0.05	0.0443	0.0532	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	0.05	0.0975	FALSE	231	217	16	283	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11744	22	0	0.24	0.0532	0.0089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	0.24	0.0621	FALSE	230	198	14	283	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND5--MT-ATP8	5	5	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	NO	16	22	0.38	0.31	0.0443	0.0443	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0.31	0.38	0.0886	FALSE	43	37	8	105	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	4	9	MT-ND6	1111	chrM:14563:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.0354	0.0798	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	0.87	1	0.1152	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MUC2--MT-CO1	6	1	MUC2	18043	chr11:1092917:+	MT-CO1	33008	chrM:6564:+	INCL_NON_REF_SPLICE	YES	622	21183	0.01	0	0.0532	0.0089	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CL40_LARGE_INTESTINE	0	0.01	0.0621	FALSE	0	0	0	2	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	11	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	76	0	0.16	1	0.0266	0.0975	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0.16	1	0.1241	FALSE	213	207	15	279	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	7	MT-ND4	1774	chrM:11533:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	15406	0	0	1	0.0354	0.062	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	1	0.0974	FALSE	231	217	16	283	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	10	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	3	0	0.81	1	0.0266	0.0886	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0.81	1	0.1152	FALSE	43	37	8	105	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	C15orf57--CBX3	4	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	53	18	0.15	0.33	0.0354	0.0443	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CL40_LARGE_INTESTINE	0.15	0.33	0.0797	TRUE	267	562	48	632	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	11913	19	0	0.24	0.0443	0.0089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	0.24	0.0532	FALSE	230	193	14	283	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13283	22	0	0.21	0.0443	0.0089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	0.21	0.0532	FALSE	231	205	14	283	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	C15orf57--CBX3	4	4	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	47	18	0.15	0.31	0.0354	0.0354	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CL40_LARGE_INTESTINE	0.15	0.31	0.0708	TRUE	267	562	48	632	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	1	1	0.0443	FALSE	344	821	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TN	5	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL40_LARGE_INTESTINE	1	1	0.0443	FALSE	369	2501	205	193	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ATP6--MT-ND1	4	2	MT-ATP6	1303	chrM:8829:+	MT-ND1	4682	chrM:3307:+	INCL_NON_REF_SPLICE	NO	17715	0	0	1	0.0354	0.0177	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CL40_LARGE_INTESTINE	0	1	0.0531	FALSE	78	55	12	7	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ATP6--MT-ND1	4	1	MT-ATP6	1126	chrM:8652:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	10672	8121	0	0	0.0354	0.0089	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CL40_LARGE_INTESTINE	0	0	0.0443	FALSE	78	55	12	7	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	1	MT-ND4	1152	chrM:10911:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	10329	16	0	0.24	0.0354	0.0089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	0.24	0.0443	FALSE	230	193	14	283	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND5--MT-ATP8	4	1	MT-ND5	1969	chrM:13305:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	5910	532	0	0.01	0.0354	0.0089	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	0.01	0.0443	FALSE	43	37	8	105	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TN	4	1	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0.0089	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL40_LARGE_INTESTINE	1	1	0.0443	FALSE	369	2501	205	193	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ATP6--MT-ND1	4	0	MT-ATP6	1158	chrM:8684:+	MT-ND1	5482	chrM:4107:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CL40_LARGE_INTESTINE	1	1	0.0354	FALSE	78	55	12	7	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND5--MT-ATP8	4	0	MT-ND5	1383	chrM:12719:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	1	1	0.0354	FALSE	42	36	7	104	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	1	1	0.0354	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-TA--MT-TN	4	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CL40_LARGE_INTESTINE	1	1	0.0354	FALSE	369	2501	205	193	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MUC2--MT-CO1	3	4	MUC2	18457	chr11:1093331:+	MT-CO1	33008	chrM:6564:+	INCL_NON_REF_SPLICE	YES	2365	21183	0	0	0.0266	0.0354	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CL40_LARGE_INTESTINE	0	0	0.062	FALSE	0	0	0	2	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1566	chrM:11325:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	17071	11	0	0.35	0.0266	0.0266	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	0.35	0.0532	FALSE	231	217	16	283	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MUC2--MT-CO1	3	3	MUC2	18112	chr11:1092986:+	MT-CO1	33008	chrM:6564:+	INCL_NON_REF_SPLICE	YES	1779	21183	0	0	0.0266	0.0266	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CL40_LARGE_INTESTINE	0	0	0.0532	FALSE	0	0	0	2	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	2	MT-ND5	1628	chrM:12964:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	5973	0	0	1	0.0266	0.0177	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	1	0.0443	FALSE	42	36	7	104	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	2	MT-ND5	1789	chrM:13125:+	MT-ATP8	5881	chrM:8434:+	INCL_NON_REF_SPLICE	YES	4139	0	0	1	0.0266	0.0177	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	1	0.0443	FALSE	43	37	8	105	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	NRIP1--AF127936.7	3	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.29	1	0.0266	0.0177	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CL40_LARGE_INTESTINE	0.29	1	0.0443	FALSE	164	806	69	479	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0266	0.0177	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CL40_LARGE_INTESTINE	0.56	1	0.0443	FALSE	125	705	46	456	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	3	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.0266	0.0177	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CL40_LARGE_INTESTINE	0.71	1	0.0443	FALSE	81	155	12	160	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	8296	0	0	1	0.0266	0.0089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	1	0.0355	FALSE	230	193	14	283	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	11878	77	0	0.05	0.0266	0.0089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	0.05	0.0355	FALSE	230	198	14	283	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1112	chrM:10871:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	8709	0	0	1	0.0266	0.0089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	1	0.0355	FALSE	230	193	14	283	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	1	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	9	3	0.31	0.57	0.0266	0.0089	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL40_LARGE_INTESTINE	0.31	0.57	0.0355	FALSE	344	821	44	306	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	1	MT-ND5	1626	chrM:12962:+	MT-ATP8	5922	chrM:8475:+	INCL_NON_REF_SPLICE	YES	6083	116	0	0.03	0.0266	0.0089	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	0	0.03	0.0355	FALSE	42	36	7	104	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	3	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0.0089	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	1	1	0.0355	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	NPM1P24--SET	3	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	15	819	0.21	0	0.0266	0.0089	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CL40_LARGE_INTESTINE	0	0.21	0.0355	FALSE	0	0	0	434	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ATP6--MT-ND1	3	0	MT-ATP6	1128	chrM:8654:+	MT-ND1	5192	chrM:3817:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CL40_LARGE_INTESTINE	1	1	0.0266	FALSE	78	55	12	7	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ATP6--MT-ND1	3	0	MT-ATP6	1158	chrM:8684:+	MT-ND1	5165	chrM:3790:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CL40_LARGE_INTESTINE	1	1	0.0266	FALSE	78	55	12	7	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1034	chrM:10793:+	MT-ATP8	5467	chrM:8454:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CL40_LARGE_INTESTINE	1	1	0.0266	FALSE	230	191	14	283	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1002	chrM:14672:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL40_LARGE_INTESTINE	1	1	0.0266	FALSE	499	1288	110	792	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	MUC2--MT-CO1	3	0	MUC2	6010	chr11:1080560:+	MT-CO1	33001	chrM:6557:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CL40_LARGE_INTESTINE	1	1	0.0266	FALSE	0	0	0	1	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	NRIP1--AF127936.7	2	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0177	0.0177	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CL40_LARGE_INTESTINE	0.67	1	0.0354	FALSE	292	1546	117	613	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	AC104389.28--HBE1	2	1	AC104389.28	3440	chr11:5367003:-	HBE1	14230	chr11:5290906:-	ONLY_REF_SPLICE	YES	8	18	0.27	0.14	0.0177	0.0089	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CL40_LARGE_INTESTINE	0.14	0.27	0.0266	TRUE	0	48	0	65	48	FALSE	ACH-000798
CL40_LARGE_INTESTINE	FBRSL1--NOC4L	2	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	43	70	0.07	0.04	0.0177	0.0089	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	CL40_LARGE_INTESTINE	0.04	0.07	0.0266	TRUE	3	48	0	26	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	DNM2--ACBD3	2	0	DNM2	23425	chr19:10916643:+	ACBD3	49210	chr1:226334522:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	DNM2->chr19:10828755-10944164:+,dynamin_2,ACBD3->acyl-CoA_binding_domain_containing_3,chr1:226332380-226374431:-	CL40_LARGE_INTESTINE	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000798
CL40_LARGE_INTESTINE	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	CL40_LARGE_INTESTINE	1	1	0.0177	TRUE	145	312	16	51	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	RNF169--ANO1	2	0	RNF169	2589	chr11:74500744:+	ANO1	20597	chr11:69949172:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	RNF169->chr11:74459913-74553458:+,ring_finger_protein_169,ANO1->anoctamin_1,chr11:69924408-70035634:+	CL40_LARGE_INTESTINE	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000798
CL40_LARGE_INTESTINE	TCERG1--SLC12A2	2	0	TCERG1	1098	chr5:145826971:+	SLC12A2	35238	chr5:127448506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	TCERG1->chr5:145826874-145891524:+,transcription_elongation_regulator_1,SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2	CL40_LARGE_INTESTINE	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000798
CL40_LARGE_INTESTINE	TULP4--RP11-732M18.3	2	0	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	CL40_LARGE_INTESTINE	1	1	0.0177	TRUE	126	140	6	21	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	RP11-216L13.17--CCT3	1	1	RP11-216L13.17	1980	chr9:139686810:+	CCT3	15278	chr1:156294880:-	ONLY_REF_SPLICE	YES	0	657	1	0	0.0089	0.0089	RP11-216L13.17->chr9:139685831-139695047:+,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	CL40_LARGE_INTESTINE	0	1	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	15	1	0.12	0.0089	0.0089	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CL40_LARGE_INTESTINE	0.12	1	0.0178	TRUE	458	1351	185	561	0	FALSE	ACH-000798
CL40_LARGE_INTESTINE	VMP1--CLTC	1	1	VMP1	1557	chr17:57785109:+	CLTC	24482	chr17:57721637:+	ONLY_REF_SPLICE	YES	16	262	0.11	0.01	0.0089	0.0089	{Klijn_CCL:Lung=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[10882],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain	CL40_LARGE_INTESTINE	0.01	0.11	0.0178	FALSE	0	0	0	3	0	FALSE	ACH-000798
NCIH2009_LUNG	TIMM23B--LINC00843	60	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7379	0.3074	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2009_LUNG	1	1	1.0453	TRUE	508	994	45	981	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-TA--MT-TC	61	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7502	0.0615	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2009_LUNG	1	1	0.8117	FALSE	462	80	0	856	0	FALSE	ACH-000886
NCIH2009_LUNG	KANSL1--ARL17B	48	24	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	53	67	0.58	0.52	0.5903	0.2951	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH2009_LUNG	0.52	0.58	0.8854	TRUE	181	1564	124	196	0	FALSE	ACH-000886
NCIH2009_LUNG	FAM222B--PPP5D1	40	34	FAM222B	8446	chr17:27093604:-	PPP5D1	27575	chr19:46984697:-	ONLY_REF_SPLICE	YES	89	0	0.45	1	0.4919	0.4181	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PPP5D1->PPP5_tetratricopeptide_repeat_domain_containing_1,chr19:46984053-47104457:-	NCIH2009_LUNG	0.45	1	0.91	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	TROVE2--DZIP1	30	63	TROVE2	1355	chr1:193028906:+	DZIP1	34885	chr13:96258313:-	ONLY_REF_SPLICE	YES	277	1	0.25	0.99	0.3689	0.7748	TROVE2->TROVE_domain_family_member_2,chr1:193028552-193060907:+,DZIP1->DAZ_interacting_zinc_finger_protein_1,chr13:96230457-96296957:-	NCIH2009_LUNG	0.25	0.99	1.1437	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	ZNF654--HMGB2	34	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4181	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2009_LUNG	1	1	0.4181	TRUE	0	0	0	518	0	FALSE	ACH-000886
NCIH2009_LUNG	RB1--LPAR6	29	19	RB1	17872	chr13:48955579:+	LPAR6	41644	chr13:48989946:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3566	0.2337	NEIGHBORS_OVERLAP:+:-:[55133],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,LPAR6->chr13:48963707-49018840:-,lysophosphatidic_acid_receptor_6	NCIH2009_LUNG	1	1	0.5903	FALSE	0	0	0	1	0	FALSE	ACH-000886
NCIH2009_LUNG	TROVE2--DZIP1	17	67	TROVE2	1801	chr1:193029352:+	DZIP1	34885	chr13:96258313:-	ONLY_REF_SPLICE	YES	269	1	0.24	0.99	0.2091	0.824	TROVE2->TROVE_domain_family_member_2,chr1:193028552-193060907:+,DZIP1->DAZ_interacting_zinc_finger_protein_1,chr13:96230457-96296957:-	NCIH2009_LUNG	0.24	0.99	1.0331	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	TIMM23--RP11-464F9.1	32	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	356	1	0.09	0.97	0.3935	0.0246	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2009_LUNG	0.09	0.97	0.4181	TRUE	519	3926	326	965	0	FALSE	ACH-000886
NCIH2009_LUNG	CDC40--METTL24	25	20	CDC40	2580	chr6:110514471:+	METTL24	30631	chr6:110567463:-	ONLY_REF_SPLICE	YES	104	0	0.3	1	0.3074	0.246	{Klijn_CCL:Lung=1},NEIGHBORS_OVERLAP:+:-:[8347],CDC40->cell_division_cycle_40,chr6:110501344-110575478:+,METTL24->chr6:110567131-110679475:-,methyltransferase_like_24	NCIH2009_LUNG	0.3	1	0.5534	FALSE	0	0	0	1	0	FALSE	ACH-000886
NCIH2009_LUNG	C1orf21--C1orf27	25	5	C1orf21	3624	chr1:184476816:+	C1orf27	35710	chr1:186367445:+	ONLY_REF_SPLICE	YES	74	86	0.29	0.26	0.3074	0.0615	{Klijn_CCL:Lung=1},C1orf21->chr1:184356192-184598154:+,chromosome_1_open_reading_frame_21,C1orf27->chr1:186344890-186390510:+,chromosome_1_open_reading_frame_27	NCIH2009_LUNG	0.26	0.29	0.3689	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	RP11-59N23.1--CMAS	20	14	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	17	643	0.67	0.05	0.246	0.1722	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH2009_LUNG	0.05	0.67	0.4182	TRUE	21	102	17	28	0	FALSE	ACH-000886
NCIH2009_LUNG	TROVE2--DZIP1	11	48	TROVE2	1355	chr1:193028906:+	DZIP1	37010	chr13:96246340:-	ONLY_REF_SPLICE	YES	277	5	0.18	0.92	0.1353	0.5903	TROVE2->TROVE_domain_family_member_2,chr1:193028552-193060907:+,DZIP1->DAZ_interacting_zinc_finger_protein_1,chr13:96230457-96296957:-	NCIH2009_LUNG	0.18	0.92	0.7256	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	HSP90AB1--MT-RNR2	17	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3923	0	0	1	0.2091	0.0246	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2009_LUNG	0	1	0.2337	FALSE	13	9	0	364	0	FALSE	ACH-000886
NCIH2009_LUNG	TROVE2--DZIP1	5	49	TROVE2	1801	chr1:193029352:+	DZIP1	37010	chr13:96246340:-	ONLY_REF_SPLICE	YES	269	5	0.17	0.92	0.0615	0.6026	TROVE2->TROVE_domain_family_member_2,chr1:193028552-193060907:+,DZIP1->DAZ_interacting_zinc_finger_protein_1,chr13:96230457-96296957:-	NCIH2009_LUNG	0.17	0.92	0.6641	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	FAM222B--PPP5D1	7	40	FAM222B	12214	chr17:27085298:-	PPP5D1	27575	chr19:46984697:-	INCL_NON_REF_SPLICE	YES	75	0	0.39	1	0.0861	0.4919	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PPP5D1->PPP5_tetratricopeptide_repeat_domain_containing_1,chr19:46984053-47104457:-	NCIH2009_LUNG	0.39	1	0.578	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	RP11-368L12.1--ZNF521	15	5	RP11-368L12.1	3549	chr16:63565129:-	ZNF521	23773	chr18:22775208:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1845	0.0615	RP11-368L12.1->chr16:63348168-63651950:-,ZNF521->Oncogene{Bushman},chr18:22641890-22932154:-,zinc_finger_protein_521	NCIH2009_LUNG	1	1	0.246	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	HSPBP1--GRK5	16	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1968	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH2009_LUNG	1	1	0.1968	TRUE	1	39	0	134	39	FALSE	ACH-000886
NCIH2009_LUNG	MT-CO3--MT-ATP6	9	28	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	5	0.97	0.88	0.1107	0.3443	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2009_LUNG	0.88	0.97	0.455	FALSE	189	492	56	216	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-CO3--MT-ATP6	8	26	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.87	0.0984	0.3197	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2009_LUNG	0.87	1	0.4181	FALSE	189	492	56	216	0	FALSE	ACH-000886
NCIH2009_LUNG	FAM222B--PPP5D1	5	36	FAM222B	11703	chr17:27085809:-	PPP5D1	27575	chr19:46984697:-	INCL_NON_REF_SPLICE	YES	69	0	0.37	1	0.0615	0.4427	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PPP5D1->PPP5_tetratricopeptide_repeat_domain_containing_1,chr19:46984053-47104457:-	NCIH2009_LUNG	0.37	1	0.5042	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	RP11-96H19.1--RP11-446N19.1	10	16	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	1	0.87	0.96	0.123	0.1968	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2009_LUNG	0.87	0.96	0.3198	FALSE	515	4851	409	746	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-CO3--MT-ATP6	6	29	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	5	0.92	0.88	0.0738	0.3566	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2009_LUNG	0.88	0.92	0.4304	FALSE	189	492	56	216	0	FALSE	ACH-000886
NCIH2009_LUNG	FAM222B--PPP5D1	3	40	FAM222B	12224	chr17:27085288:-	PPP5D1	27575	chr19:46984697:-	INCL_NON_REF_SPLICE	YES	73	0	0.37	1	0.0369	0.4919	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PPP5D1->PPP5_tetratricopeptide_repeat_domain_containing_1,chr19:46984053-47104457:-	NCIH2009_LUNG	0.37	1	0.5288	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	CALM3--MT-ND4L	12	3	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1362	0	0.01	1	0.1476	0.0369	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2009_LUNG	0.01	1	0.1845	FALSE	1	1	0	107	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-CO3--MT-ATP6	4	33	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	1	35	0.97	0.51	0.0492	0.4058	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2009_LUNG	0.51	0.97	0.455	FALSE	189	492	56	216	0	FALSE	ACH-000886
NCIH2009_LUNG	RP11-96H19.1--RP11-446N19.1	7	21	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.88	1	0.0861	0.2583	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2009_LUNG	0.88	1	0.3444	FALSE	407	2205	196	549	0	FALSE	ACH-000886
NCIH2009_LUNG	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1476	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2009_LUNG	1	1	0.1476	TRUE	0	0	0	434	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-CO3--MT-ATP6	10	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.123	0.0369	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2009_LUNG	0.87	1	0.1599	FALSE	189	492	56	216	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-CO3--MT-ATP6	8	9	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	1	0.94	0.94	0.0984	0.1107	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2009_LUNG	0.94	0.94	0.2091	FALSE	189	492	56	216	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-CO3--MT-ATP6	3	29	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	1	5	0.97	0.86	0.0369	0.3566	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2009_LUNG	0.86	0.97	0.3935	FALSE	189	492	56	216	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-CO3--MT-ATP6	3	29	MT-CO3	1090	chrM:9296:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	1	8	0.97	0.8	0.0369	0.3566	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2009_LUNG	0.8	0.97	0.3935	FALSE	189	492	56	216	0	FALSE	ACH-000886
NCIH2009_LUNG	EIF5A--MLLT10P1	10	0	EIF5A	1754	chr17:7211071:+	MLLT10P1	9446	chr20:29638051:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.123	0	EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A,MLLT10P1->chr20:29637799-29638060:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10_pseudogene_1	NCIH2009_LUNG	1	1	0.123	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	FTH1--ACTG1	9	3	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	3997	6	0	0.67	0.1107	0.0369	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH2009_LUNG	0	0.67	0.1476	TRUE	0	0	0	64	0	FALSE	ACH-000886
NCIH2009_LUNG	RP11-120D5.1--MID1	8	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	213	0.67	0.06	0.0984	0.0738	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2009_LUNG	0.06	0.67	0.1722	FALSE	16	356	14	466	0	FALSE	ACH-000886
NCIH2009_LUNG	GAS6-AS1--TMCO3	9	0	GAS6-AS1	1062	chr13:114518664:+	TMCO3	22257	chr13:114201615:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1107	0	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	NCIH2009_LUNG	1	1	0.1107	TRUE	0	0	0	2	0	TRUE	ACH-000886
NCIH2009_LUNG	C15orf57--CBX3	6	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	68	40	0.2	0.3	0.0738	0.1353	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2009_LUNG	0.2	0.3	0.2091	TRUE	267	562	48	632	0	FALSE	ACH-000886
NCIH2009_LUNG	HSP90AB1--MT-RNR2	8	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3959	0	0	1	0.0984	0.0246	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2009_LUNG	0	1	0.123	FALSE	13	9	0	364	0	FALSE	ACH-000886
NCIH2009_LUNG	RB1--LPAR6	3	20	RB1	17872	chr13:48955579:+	LPAR6	40134	chr13:48991456:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0369	0.246	NEIGHBORS_OVERLAP:+:-:[55133],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,LPAR6->chr13:48963707-49018840:-,lysophosphatidic_acid_receptor_6	NCIH2009_LUNG	1	1	0.2829	FALSE	0	0	0	1	0	FALSE	ACH-000886
NCIH2009_LUNG	CACYBP--UBAC2	6	7	CACYBP	1526	chr1:174968825:+	UBAC2	15445	chr13:99890681:+	ONLY_REF_SPLICE	YES	58	94	0.18	0.12	0.0738	0.0861	CACYBP->calcyclin_binding_protein,chr1:174968300-174980851:+,UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+	NCIH2009_LUNG	0.12	0.18	0.1599	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	MT-ND1--MT-RNR2	6	6	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	58	0	0.17	1	0.0738	0.0738	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2009_LUNG	0.17	1	0.1476	FALSE	114	26	4	85	0	FALSE	ACH-000886
NCIH2009_LUNG	RP11-123O10.4--GRIP1	7	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0861	0.0246	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2009_LUNG	1	1	0.1107	FALSE	416	2512	207	587	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-ND1--MT-RNR2	6	5	MT-ND1	1227	chrM:3533:+	MT-RNR2	5001	chrM:1715:+	INCL_NON_REF_SPLICE	YES	50	0	0.18	1	0.0738	0.0615	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2009_LUNG	0.18	1	0.1353	FALSE	114	26	4	85	0	FALSE	ACH-000886
NCIH2009_LUNG	VAT1--MT-ND4L	7	1	VAT1	7912	chr17:41167714:-	MT-ND4L	12006	chrM:10471:+	INCL_NON_REF_SPLICE	YES	570	0	0.01	1	0.0861	0.0123	VAT1->chr17:41166622-41177140:-,vesicle_amine_transport_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2009_LUNG	0.01	1	0.0984	FALSE	0	0	0	5	0	FALSE	ACH-000886
NCIH2009_LUNG	FTH1--ACTG1	6	3	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	4040	6	0	0.6	0.0738	0.0369	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH2009_LUNG	0	0.6	0.1107	TRUE	0	0	0	64	0	FALSE	ACH-000886
NCIH2009_LUNG	HLA-A--MT-ND1	6	3	HLA-A	2742	chr6:29910778:+	MT-ND1	8756	chrM:3437:+	INCL_NON_REF_SPLICE	YES	4112	5084	0	0	0.0738	0.0369	HLA-A->chr6:29909037-29913661:+,major_histocompatibility_complex,_class_I,_A,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH2009_LUNG	0	0	0.1107	FALSE	1	0	0	11	0	FALSE	ACH-000886
NCIH2009_LUNG	TMCO3--LINC01035	3	15	TMCO3	7521	chr13:114157903:+	LINC01035	21817	chr1:189005849:+	ONLY_REF_SPLICE	YES	525	0	0.03	1	0.0369	0.1845	TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,LINC01035->chr1:188874819-189006393:+,long_intergenic_non-protein_coding_RNA_1035	NCIH2009_LUNG	0.03	1	0.2214	TRUE	0	0	0	1	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-CO3--MT-ATP6	4	10	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	2	1	0.88	0.93	0.0492	0.123	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2009_LUNG	0.88	0.93	0.1722	FALSE	189	492	56	216	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-CO3--MT-ATP6	4	10	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	1	1	0.93	0.93	0.0492	0.123	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2009_LUNG	0.93	0.93	0.1722	FALSE	189	492	56	216	0	FALSE	ACH-000886
NCIH2009_LUNG	FTH1--ACTG1	6	1	FTH1	1258	chr11:61734875:-	ACTG1	11019	chr17:79479357:-	INCL_NON_REF_SPLICE	YES	4570	225	0	0.03	0.0738	0.0123	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH2009_LUNG	0	0.03	0.0861	FALSE	0	0	0	64	0	FALSE	ACH-000886
NCIH2009_LUNG	RP11-96H19.1--RP11-446N19.1	1	21	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	4	0	0.85	1	0.0123	0.2583	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2009_LUNG	0.85	1	0.2706	FALSE	275	511	55	178	0	FALSE	ACH-000886
NCIH2009_LUNG	CTD-2251F13.1--PRKD1	6	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0738	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH2009_LUNG	1	1	0.0738	TRUE	0	3	0	9	3	TRUE	ACH-000886
NCIH2009_LUNG	MT-ND1--MT-RNR2	3	12	MT-ND1	1303	chrM:3609:+	MT-RNR2	5007	chrM:1721:+	INCL_NON_REF_SPLICE	YES	76	0	0.16	1	0.0369	0.1476	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2009_LUNG	0.16	1	0.1845	FALSE	114	26	4	85	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0738	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2009_LUNG	1	1	0.0738	FALSE	462	80	0	856	0	FALSE	ACH-000886
NCIH2009_LUNG	RP11-96H19.1--RP11-446N19.1	2	16	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.95	0.0246	0.1968	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2009_LUNG	0.95	1	0.2214	FALSE	467	2173	244	435	0	FALSE	ACH-000886
NCIH2009_LUNG	CFH--GPC6	5	2	CFH	1298	chr1:196621305:+	GPC6	32474	chr13:94482407:+	ONLY_REF_SPLICE	YES	27	31	0.21	0.18	0.0615	0.0246	{Klijn_CCL:Lung=1},CFH->chr1:196621008-196716634:+,complement_factor_H,GPC6->chr13:93879095-95059655:+,glypican_6	NCIH2009_LUNG	0.18	0.21	0.0861	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	MT-TA--MT-TC	4	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0492	0.0615	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2009_LUNG	1	1	0.1107	FALSE	462	80	0	856	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-CO3--MT-ATP6	3	8	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	NO	1	0	0.92	1	0.0369	0.0984	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2009_LUNG	0.92	1	0.1353	FALSE	189	492	56	216	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-TA--MT-TC	4	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0492	0.0492	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2009_LUNG	1	1	0.0984	FALSE	462	80	0	856	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-TA--MT-TY	5	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0615	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH2009_LUNG	1	1	0.0615	FALSE	13	214	14	42	0	FALSE	ACH-000886
NCIH2009_LUNG	TROVE2--DZIP1	1	16	TROVE2	1355	chr1:193028906:+	DZIP1	38153	chr13:96242695:-	ONLY_REF_SPLICE	YES	277	21	0.06	0.45	0.0123	0.1968	TROVE2->TROVE_domain_family_member_2,chr1:193028552-193060907:+,DZIP1->DAZ_interacting_zinc_finger_protein_1,chr13:96230457-96296957:-	NCIH2009_LUNG	0.06	0.45	0.2091	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	ATP11A--CUL4A	4	2	ATP11A	34653	chr13:113530255:+	CUL4A	67191	chr13:113917801:+	ONLY_REF_SPLICE	YES	305	658	0.02	0.01	0.0492	0.0246	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,CUL4A->chr13:113862552-113919399:+,cullin_4A	NCIH2009_LUNG	0.01	0.02	0.0738	FALSE	0	7	0	5	3	FALSE	ACH-000886
NCIH2009_LUNG	MT-ND1--MT-RNR2	3	6	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	56	12289	0.14	0	0.0369	0.0738	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2009_LUNG	0	0.14	0.1107	FALSE	120	26	5	87	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-ND1--MT-RNR2	3	6	MT-ND1	1272	chrM:3578:+	MT-RNR2	5546	chrM:2260:+	INCL_NON_REF_SPLICE	YES	60	12458	0.13	0	0.0369	0.0738	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2009_LUNG	0	0.13	0.1107	FALSE	120	26	5	87	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-ND1--MT-RNR2	3	6	MT-ND1	1272	chrM:3578:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	YES	60	0	0.13	1	0.0369	0.0738	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2009_LUNG	0.13	1	0.1107	FALSE	114	26	4	85	0	FALSE	ACH-000886
NCIH2009_LUNG	NOTCH2NL--GJA8	3	6	NOTCH2NL	1318	chr1:145209436:+	GJA8	18198	chr1:147380072:+	ONLY_REF_SPLICE	YES	405	0	0.02	1	0.0369	0.0738	NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like,GJA8->chr1:147374946-147381393:+,gap_junction_protein_alpha_8	NCIH2009_LUNG	0.02	1	0.1107	TRUE	0	0	0	1	0	FALSE	ACH-000886
NCIH2009_LUNG	PLOD2--CP	4	2	PLOD2	17320	chr3:145796903:-	CP	53891	chr3:148883837:-	ONLY_REF_SPLICE	YES	297	0	0.02	1	0.0492	0.0246	PLOD2->chr3:145787227-145881440:-,procollagen-lysine,2-oxoglutarate_5-dioxygenase_2,CP->ceruloplasmin_(ferroxidase),chr3:148880197-148939842:-	NCIH2009_LUNG	0.02	1	0.0738	TRUE	0	0	0	1	0	FALSE	ACH-000886
NCIH2009_LUNG	FTH1--ACTG1	4	1	FTH1	1187	chr11:61734946:-	ACTG1	10556	chr17:79479820:-	INCL_NON_REF_SPLICE	YES	3321	6	0	0.45	0.0492	0.0123	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH2009_LUNG	0	0.45	0.0615	FALSE	0	0	0	64	0	FALSE	ACH-000886
NCIH2009_LUNG	KANSL1--ARL17B	2	9	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	46	67	0.19	0.14	0.0246	0.1107	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH2009_LUNG	0.14	0.19	0.1353	TRUE	105	90	7	93	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-ND1--MT-RNR2	3	5	MT-ND1	1235	chrM:3541:+	MT-RNR2	5565	chrM:2279:+	INCL_NON_REF_SPLICE	YES	49	12568	0.14	0	0.0369	0.0615	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2009_LUNG	0	0.14	0.0984	FALSE	120	26	5	87	0	FALSE	ACH-000886
NCIH2009_LUNG	MT-ND1--MT-RNR2	3	5	MT-ND1	1204	chrM:3510:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	YES	46	0	0.15	1	0.0369	0.0615	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2009_LUNG	0.15	1	0.0984	FALSE	114	26	4	85	0	FALSE	ACH-000886
NCIH2009_LUNG	HLA-A--MT-ND1	3	4	HLA-A	2763	chr6:29910799:+	MT-ND1	8779	chrM:3460:+	INCL_NON_REF_SPLICE	YES	4019	7248	0	0	0.0369	0.0492	HLA-A->chr6:29909037-29913661:+,major_histocompatibility_complex,_class_I,_A,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH2009_LUNG	0	0	0.0861	FALSE	1	0	0	11	0	FALSE	ACH-000886
NCIH2009_LUNG	RP11-114H23.1--RP11-114H23.2	2	8	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0.0984	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH2009_LUNG	1	1	0.123	FALSE	81	155	12	160	0	FALSE	ACH-000886
NCIH2009_LUNG	KANSL1--ARL17B	2	7	KANSL1	7536	chr17:44248221:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	46	54	0.16	0.14	0.0246	0.0861	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH2009_LUNG	0.14	0.16	0.1107	TRUE	0	0	0	6	0	FALSE	ACH-000886
NCIH2009_LUNG	ARHGDIA--MT-CO3	3	1	ARHGDIA	3695	chr17:79826588:-	MT-CO3	7748	chrM:9268:+	INCL_NON_REF_SPLICE	YES	204	0	0.02	1	0.0369	0.0123	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH2009_LUNG	0.02	1	0.0492	FALSE	0	0	0	6	0	FALSE	ACH-000886
NCIH2009_LUNG	ATR--COL21A1	3	1	ATR	3414	chr3:142284963:-	COL21A1	62293	chr6:56035926:-	ONLY_REF_SPLICE	YES	35	2	0.1	0.67	0.0369	0.0123	ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,COL21A1->chr6:55921388-56258892:-,collagen_type_XXI_alpha_1	NCIH2009_LUNG	0.1	0.67	0.0492	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	C7orf50--MAD1L1	3	1	C7orf50	3078	chr7:1166893:-	MAD1L1	55558	chr7:1855864:-	ONLY_REF_SPLICE	YES	309	33	0.01	0.11	0.0369	0.0123	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	NCIH2009_LUNG	0.01	0.11	0.0492	FALSE	0	4	0	5	2	FALSE	ACH-000886
NCIH2009_LUNG	CAPN15--KCTD5	3	0	CAPN15	2366	chr16:583998:+	KCTD5	21568	chr16:2745936:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0369	0	GTEx&tcga_normals:1/3694=0.03%,CAPN15->calpain_15,chr16:577717-604636:+,KCTD5->chr16:2732476-2759031:+,potassium_channel_tetramerization_domain_containing_5	NCIH2009_LUNG	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	CTD-2251F13.1--PRKD1	3	0	CTD-2251F13.1	1069	chr14:30766181:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0369	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH2009_LUNG	1	1	0.0369	TRUE	0	3	0	9	3	TRUE	ACH-000886
NCIH2009_LUNG	HSPBP1--GRK5	3	0	HSPBP1	1855	chr19:55790895:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH2009_LUNG	1	1	0.0369	TRUE	1	39	0	134	39	FALSE	ACH-000886
NCIH2009_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2009_LUNG	1	1	0.0369	FALSE	189	492	56	216	0	FALSE	ACH-000886
NCIH2009_LUNG	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2009_LUNG	1	1	0.0369	TRUE	0	0	0	434	0	FALSE	ACH-000886
NCIH2009_LUNG	RB1--LPAR6	1	8	RB1	17872	chr13:48955579:+	LPAR6	42755	chr13:48987247:-	ONLY_REF_SPLICE	NO	0	7	1	0.56	0.0123	0.0984	NEIGHBORS_OVERLAP:+:-:[55133],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,LPAR6->chr13:48963707-49018840:-,lysophosphatidic_acid_receptor_6	NCIH2009_LUNG	0.56	1	0.1107	FALSE	0	0	0	1	0	FALSE	ACH-000886
NCIH2009_LUNG	RP11-59N23.3--RP11-729I10.2	3	0	RP11-59N23.3	1459	chr12:21815705:+	RP11-729I10.2	7910	chr12:22022516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0369	0	NEIGHBORS[67178],RP11-59N23.3->chr12:21815247-21912966:+,RP11-729I10.2->chr12:21980144-22040891:+	NCIH2009_LUNG	1	1	0.0369	FALSE	0	2	0	5	0	FALSE	ACH-000886
NCIH2009_LUNG	C1orf21--C1orf27	2	3	C1orf21	3624	chr1:184476816:+	C1orf27	37442	chr1:186375215:+	ONLY_REF_SPLICE	YES	74	85	0.06	0.06	0.0246	0.0369	{Klijn_CCL:Lung=1},C1orf21->chr1:184356192-184598154:+,chromosome_1_open_reading_frame_21,C1orf27->chr1:186344890-186390510:+,chromosome_1_open_reading_frame_27	NCIH2009_LUNG	0.06	0.06	0.0615	TRUE	0	0	0	1	0	FALSE	ACH-000886
NCIH2009_LUNG	NCK1--PPP2R3A	2	2	NCK1	1146	chr3:136581195:+	PPP2R3A	23914	chr3:135789320:+	ONLY_REF_SPLICE	YES	29	19	0.12	0.17	0.0246	0.0246	NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,PPP2R3A->chr3:135684515-135866733:+,protein_phosphatase_2_regulatory_subunit_B'',_alpha	NCIH2009_LUNG	0.12	0.17	0.0492	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	NRIP1--AF127936.7	2	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0.0246	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2009_LUNG	1	1	0.0492	FALSE	292	1546	117	613	0	FALSE	ACH-000886
NCIH2009_LUNG	ATR--COL21A1	2	1	ATR	5292	chr3:142281074:-	COL21A1	62293	chr6:56035926:-	ONLY_REF_SPLICE	YES	31	2	0.09	0.6	0.0246	0.0123	ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,COL21A1->chr6:55921388-56258892:-,collagen_type_XXI_alpha_1	NCIH2009_LUNG	0.09	0.6	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	VCL--ADK	2	1	VCL	2333	chr10:75802911:+	ADK	37802	chr10:76158229:+	ONLY_REF_SPLICE	YES	325	598	0.01	0	0.0246	0.0123	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[31042],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ADK->adenosine_kinase,chr10:75910960-76469061:+	NCIH2009_LUNG	0	0.01	0.0369	FALSE	0	0	0	1	0	FALSE	ACH-000886
NCIH2009_LUNG	C17orf76-AS1--NOP58	2	0	C17orf76-AS1	1593	chr17:16342728:+	NOP58	24073	chr2:203160397:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	C17orf76-AS1->chr17:16342136-16381992:+,NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+	NCIH2009_LUNG	1	1	0.0246	TRUE	0	0	0	2	0	TRUE	ACH-000886
NCIH2009_LUNG	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH2009_LUNG	1	1	0.0246	TRUE	3	14	2	43	0	FALSE	ACH-000886
NCIH2009_LUNG	NRIP1--AF127936.7	1	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	38	0	0.12	1	0.0123	0.0492	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2009_LUNG	0.12	1	0.0615	FALSE	164	806	69	479	0	FALSE	ACH-000886
NCIH2009_LUNG	PLA2G4A--LINC01035	2	0	PLA2G4A	1083	chr1:186798167:+	LINC01035	23896	chr1:189005849:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	PLA2G4A->Oncogene{Bushman},chr1:186798085-186958113:+,phospholipase_A2_group_IVA,LINC01035->chr1:188874819-189006393:+,long_intergenic_non-protein_coding_RNA_1035	NCIH2009_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	RP11-120D5.1--MID1	1	4	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	10	213	0.33	0.02	0.0123	0.0492	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2009_LUNG	0.02	0.33	0.0615	FALSE	0	48	1	163	0	FALSE	ACH-000886
NCIH2009_LUNG	RP11-368L12.1--ZNF521	1	4	RP11-368L12.1	1354	chr16:63651597:-	ZNF521	23773	chr18:22775208:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0123	0.0492	RP11-368L12.1->chr16:63348168-63651950:-,ZNF521->Oncogene{Bushman},chr18:22641890-22932154:-,zinc_finger_protein_521	NCIH2009_LUNG	0.71	1	0.0615	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	SLC19A1--CCDC127	2	0	SLC19A1	10793	chr21:46945731:-	CCDC127	28889	chr5:206073:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	SLC19A1->Oncogene{Bushman},chr21:46913486-46964325:-,solute_carrier_family_19_member_1,CCDC127->chr5:196986-218330:-,coiled-coil_domain_containing_127	NCIH2009_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	C1orf21--C1orf27	1	3	C1orf21	2529	chr1:184446737:+	C1orf27	37442	chr1:186375215:+	ONLY_REF_SPLICE	YES	81	85	0.05	0.04	0.0123	0.0369	{Klijn_CCL:Lung=1},C1orf21->chr1:184356192-184598154:+,chromosome_1_open_reading_frame_21,C1orf27->chr1:186344890-186390510:+,chromosome_1_open_reading_frame_27	NCIH2009_LUNG	0.04	0.05	0.0492	TRUE	0	0	0	1	0	FALSE	ACH-000886
NCIH2009_LUNG	FAM222B--PPP5D1	1	2	FAM222B	3499	chr17:27161311:-	PPP5D1	27575	chr19:46984697:-	ONLY_REF_SPLICE	YES	26	0	0.1	1	0.0123	0.0246	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PPP5D1->PPP5_tetratricopeptide_repeat_domain_containing_1,chr19:46984053-47104457:-	NCIH2009_LUNG	0.1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	NCK1--PPP2R3A	1	2	NCK1	1112	chr3:136581161:+	PPP2R3A	23914	chr3:135789320:+	ONLY_REF_SPLICE	YES	3	19	0.5	0.14	0.0123	0.0246	NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,PPP2R3A->chr3:135684515-135866733:+,protein_phosphatase_2_regulatory_subunit_B'',_alpha	NCIH2009_LUNG	0.14	0.5	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	NCK1--PPP2R3A	1	2	NCK1	2241	chr3:136586367:+	PPP2R3A	23914	chr3:135789320:+	ONLY_REF_SPLICE	YES	41	19	0.07	0.14	0.0123	0.0246	NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,PPP2R3A->chr3:135684515-135866733:+,protein_phosphatase_2_regulatory_subunit_B'',_alpha	NCIH2009_LUNG	0.07	0.14	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	C11orf73--PICALM	1	1	C11orf73	3558	chr11:86017524:+	PICALM	14527	chr11:85742653:-	ONLY_REF_SPLICE	YES	169	379	0.01	0.01	0.0123	0.0123	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1},C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	NCIH2009_LUNG	0.01	0.01	0.0246	FALSE	1	2	0	10	0	FALSE	ACH-000886
NCIH2009_LUNG	C11orf73--PICALM	1	1	C11orf73	4722	chr11:86037718:+	PICALM	14527	chr11:85742653:-	ONLY_REF_SPLICE	YES	164	379	0.01	0.01	0.0123	0.0123	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1},C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	NCIH2009_LUNG	0.01	0.01	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000886
NCIH2009_LUNG	COL21A1--RP11-451G4.2	1	1	COL21A1	11020	chr6:56031704:-	RP11-451G4.2	38694	chr3:155008827:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0.0123	COL21A1->chr6:55921388-56258892:-,collagen_type_XXI_alpha_1,RP11-451G4.2->chr3:155008018-155011564:-	NCIH2009_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	CTD-2251F13.1--PRKD1	1	1	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	12223	chr14:30660656:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0123	0.0123	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH2009_LUNG	0.5	1	0.0246	TRUE	0	0	0	4	0	TRUE	ACH-000886
NCIH2009_LUNG	EIF4G1--FLNA	1	1	EIF4G1	14880	chr3:184046544:+	FLNA	27187	chrX:153593625:-	ONLY_REF_SPLICE	YES	881	1280	0	0	0.0123	0.0123	GTEx&tcga_normals:1/3694=0.03%,EIF4G1->Oncogene{Bushman},chr3:184032283-184053146:+,eukaryotic_translation_initiation_factor_4_gamma_1,FLNA->chrX:153576892-153603006:-,filamin_A	NCIH2009_LUNG	0	0	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000886
NCIH2009_LUNG	FAM222B--PPP5D1	1	1	FAM222B	2441	chr17:27169700:-	PPP5D1	27575	chr19:46984697:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0123	0.0123	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PPP5D1->PPP5_tetratricopeptide_repeat_domain_containing_1,chr19:46984053-47104457:-	NCIH2009_LUNG	0.2	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000886
NCIH2009_LUNG	MRPL10--SCRN2	1	1	MRPL10	3397	chr17:45905867:-	SCRN2	11307	chr17:45917738:-	ONLY_REF_SPLICE	NO	257	179	0.01	0.01	0.0123	0.0123	LOCAL_REARRANGEMENT:-:[6158],MRPL10->chr17:45900638-45908900:-,mitochondrial_ribosomal_protein_L10,SCRN2->chr17:45915058-45918699:-,secernin_2	NCIH2009_LUNG	0.01	0.01	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000886
NCIH2009_LUNG	R3HDM2--OS9	1	1	R3HDM2	2356	chr12:57789532:-	OS9	36037	chr12:58109543:+	ONLY_REF_SPLICE	YES	13	222	0.13	0.01	0.0123	0.0123	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	NCIH2009_LUNG	0.01	0.13	0.0246	FALSE	0	0	0	3	0	FALSE	ACH-000886
NCIH2009_LUNG	RP11-59N23.3--LDHB	1	1	RP11-59N23.3	1459	chr12:21815705:+	LDHB	11061	chr12:21799950:-	ONLY_REF_SPLICE	YES	12	4985	0.14	0	0.0123	0.0123	NEIGHBORS_OVERLAP:+:-:[95544],RP11-59N23.3->chr12:21815247-21912966:+,LDHB->chr12:21788276-21910791:-,lactate_dehydrogenase_B	NCIH2009_LUNG	0	0.14	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000886
NCIH2009_LUNG	SLC12A7--LPCAT1	1	1	SLC12A7	21196	chr5:1057586:-	LPCAT1	30958	chr5:1501718:-	ONLY_REF_SPLICE	NO	59	198	0.03	0.01	0.0123	0.0123	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Whole_Blood=1},SLC12A7->chr5:1050499-1112150:-,solute_carrier_family_12_member_7,LPCAT1->chr5:1456595-1524092:-,lysophosphatidylcholine_acyltransferase_1	NCIH2009_LUNG	0.01	0.03	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000886
NCIH2009_LUNG	SLC12A7--LPCAT1	1	1	SLC12A7	2884	chr5:1093648:-	LPCAT1	30958	chr5:1501718:-	ONLY_REF_SPLICE	NO	54	198	0.04	0.01	0.0123	0.0123	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Whole_Blood=1},SLC12A7->chr5:1050499-1112150:-,solute_carrier_family_12_member_7,LPCAT1->chr5:1456595-1524092:-,lysophosphatidylcholine_acyltransferase_1	NCIH2009_LUNG	0.01	0.04	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000886
NCIH2009_LUNG	UVSSA--CTBP1	1	1	UVSSA	7499	chr4:1349033:+	CTBP1	32260	chr4:1222131:-	ONLY_REF_SPLICE	YES	31	851	0.06	0	0.0123	0.0123	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH2009_LUNG	0	0.06	0.0246	FALSE	3	2	0	5	0	FALSE	ACH-000886
NCIN87_STOMACH	MT-ND4--MT-ND4L	1023	35	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	76	0	0.93	1	5.9199	0.2025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.93	1	6.1224	FALSE	344	827	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	RPS11--UNC119	338	0	RPS11	2607	chr19:50001228:+	UNC119	11939	chr17:26874813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.9559	0	RPS11->chr19:49999622-50002946:+,ribosomal_protein_S11,UNC119->chr17:26873725-26879686:-,unc-119_lipid_binding_chaperone	NCIN87_STOMACH	1	1	1.9559	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	TIMM23B--LINC00843	179	39	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0358	0.2257	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIN87_STOMACH	1	1	1.2615	TRUE	508	994	45	981	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TN	128	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7407	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIN87_STOMACH	1	1	0.7407	FALSE	369	2501	205	193	0	FALSE	ACH-000427
NCIN87_STOMACH	TIMM23--RP11-464F9.1	102	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	451	16	0.19	0.87	0.5903	0.0231	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIN87_STOMACH	0.19	0.87	0.6134	TRUE	519	3926	326	965	0	FALSE	ACH-000427
NCIN87_STOMACH	SUFU--GBF1	68	17	SUFU	3620	chr10:104309863:+	GBF1	25877	chr10:104103808:+	ONLY_REF_SPLICE	YES	38	102	0.69	0.45	0.3935	0.0984	{Klijn_CCL:Stomach=1},SUFU->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SUFU_negative_regulator_of_hedgehog_signaling,chr10:104263744-104393292:+,GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1	NCIN87_STOMACH	0.45	0.69	0.4919	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	NUTM2A-AS1--MINPP1	47	35	NUTM2A-AS1	14159	chr10:89048199:-	MINPP1	27523	chr10:89268093:+	ONLY_REF_SPLICE	YES	42	82	0.66	0.5	0.272	0.2025	GTEx_FI:{Skin=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	NCIN87_STOMACH	0.5	0.66	0.4745	TRUE	3	1	0	6	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TC	53	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3067	0.0463	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIN87_STOMACH	1	1	0.353	FALSE	462	80	0	856	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	3	171	MT-ND4	1968	chrM:11727:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	16120	0	0.01	1	0.0174	0.9895	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.01	1	1.0069	FALSE	344	827	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	4	164	MT-ND4	1285	chrM:11044:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	84	0	0.67	1	0.0231	0.949	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.67	1	0.9721	FALSE	344	827	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	4	162	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	28	0	0.86	1	0.0231	0.9375	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.86	1	0.9606	FALSE	344	826	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	12	119	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	7	4	0.95	0.97	0.0694	0.6886	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.95	0.97	0.758	FALSE	344	821	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	10	112	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	19	1	0.87	0.99	0.0579	0.6481	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.87	0.99	0.706	FALSE	344	826	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	3	134	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	9	4	0.94	0.97	0.0174	0.7754	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.94	0.97	0.7928	FALSE	344	826	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND6--MT-TE	34	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1968	0.0231	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIN87_STOMACH	1	1	0.2199	FALSE	499	1288	110	792	0	FALSE	ACH-000427
NCIN87_STOMACH	C15orf57--CBX3	29	17	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	55	51	0.46	0.47	0.1678	0.0984	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIN87_STOMACH	0.46	0.47	0.2662	TRUE	267	562	48	632	0	FALSE	ACH-000427
NCIN87_STOMACH	DPH7--PTP4A3	32	0	DPH7	1297	chr9:140473091:-	PTP4A3	14726	chr8:142431487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1852	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:10=pct:2.7],Heart=[count:7=pct:2.8],Pituitary=[count:4=pct:7.7],Nerve=[count:2=pct:1.2],Esophagus=[count:2=pct:0.5],Colon=[count:2=pct:1.0],Lung=[count:2=pct:1.2],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Kidney=[count:1=pct:7.1],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},GTEx_v2:{count=46;pct=0.53%;dist=Artery_-_Tibial=9,Heart_-_Atrial_Appendage=9,Pituitary=6,Cells_-_EBV-transformed_lymphocytes=5,Artery_-_Aorta=3,Lung=2,Artery_-_Coronary=2,Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hypothalamus=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1,Testis=1},DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7,PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3	NCIN87_STOMACH	1	1	0.1852	TRUE	29	213	5	17	0	FALSE	ACH-000427
NCIN87_STOMACH	NUTM2A-AS1--MINPP1	21	38	NUTM2A-AS1	16801	chr10:89005872:-	MINPP1	27523	chr10:89268093:+	ONLY_REF_SPLICE	YES	25	82	0.7	0.42	0.1215	0.2199	GTEx_FI:{Skin=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	NCIN87_STOMACH	0.42	0.7	0.3414	TRUE	1	1	0	6	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TN	25	20	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1447	0.1157	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIN87_STOMACH	1	1	0.2604	FALSE	369	2501	205	193	0	FALSE	ACH-000427
NCIN87_STOMACH	ZNF654--HMGB2	30	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1736	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIN87_STOMACH	1	1	0.1736	TRUE	0	0	0	518	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	3	103	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	105	1	0.5	0.99	0.0174	0.596	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.5	0.99	0.6134	FALSE	344	827	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	3	103	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	90	1	0.54	0.99	0.0174	0.596	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.54	0.99	0.6134	FALSE	344	827	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TN	12	65	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0694	0.3761	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIN87_STOMACH	1	1	0.4455	FALSE	369	2501	205	193	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TN	27	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1562	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIN87_STOMACH	1	1	0.1562	FALSE	369	2501	205	193	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	4	88	MT-ND4	1503	chrM:11262:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	687	1	0.12	0.99	0.0231	0.5092	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.12	0.99	0.5323	FALSE	344	827	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	17	36	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	13023	0	0	1	0.0984	0.2083	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0	1	0.3067	FALSE	328	800	43	304	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TN	14	48	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.081	0.2778	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIN87_STOMACH	1	1	0.3588	FALSE	369	2501	205	193	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-RNR2	24	3	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	14525	10176	0	0	0.1389	0.0174	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIN87_STOMACH	0	0	0.1563	FALSE	63	17	1	58	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TN	15	38	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0868	0.2199	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIN87_STOMACH	1	1	0.3067	FALSE	369	2501	205	193	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	3	80	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	31	1	0.73	0.99	0.0174	0.4629	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.73	0.99	0.4803	FALSE	344	826	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	SLC1A5--MT-ND4L	23	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1331	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	1	1	0.1331	FALSE	0	0	0	189	0	FALSE	ACH-000427
NCIN87_STOMACH	OXCT1--CTD-2194L12.2	18	14	OXCT1	14883	chr5:41794105:-	CTD-2194L12.2	26223	chr5:37899770:-	ONLY_REF_SPLICE	YES	87	0	0.27	1	0.1042	0.081	OXCT1->3-oxoacid_CoA-transferase_1,chr5:41730167-41870621:-,CTD-2194L12.2->chr5:37899465-37920971:-	NCIN87_STOMACH	0.27	1	0.1852	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	RP11-123O10.4--GRIP1	20	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	2	0	0.93	1	0.1157	0.0347	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIN87_STOMACH	0.93	1	0.1504	FALSE	416	2512	207	587	0	FALSE	ACH-000427
NCIN87_STOMACH	MED1--CDK12	18	5	MED1	7987	chr17:37590502:-	CDK12	35478	chr17:37665958:+	ONLY_REF_SPLICE	YES	606	1102	0.04	0.02	0.1042	0.0289	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_INVERSION:-:+:[10225],MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	NCIN87_STOMACH	0.02	0.04	0.1331	TRUE	0	0	0	1	0	FALSE	ACH-000427
NCIN87_STOMACH	HSPBP1--GRK5	19	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1099	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIN87_STOMACH	1	1	0.1099	TRUE	1	39	0	134	39	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND6--MT-TE	18	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1042	0.0231	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIN87_STOMACH	1	1	0.1273	FALSE	499	1288	110	792	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	18	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	12321	29306	0	0	0.1042	0.0058	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.11	FALSE	183	104	9	328	0	FALSE	ACH-000427
NCIN87_STOMACH	C15orf57--CBX3	14	14	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	54	52	0.34	0.35	0.081	0.081	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIN87_STOMACH	0.34	0.35	0.162	TRUE	267	562	48	632	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	4	49	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	4	0	0.93	1	0.0231	0.2836	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.93	1	0.3067	FALSE	344	821	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	7	35	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	841	0	0.05	1	0.0405	0.2025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.05	1	0.243	FALSE	344	827	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND6--MT-TE	11	19	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0637	0.1099	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIN87_STOMACH	1	1	0.1736	FALSE	499	1288	110	792	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND6--MT-TE	11	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0637	0.0868	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIN87_STOMACH	1	1	0.1505	FALSE	499	1288	110	792	0	FALSE	ACH-000427
NCIN87_STOMACH	RP11-680G10.1--GSE1	14	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	47	1	0.27	0.081	0.0174	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIN87_STOMACH	0.27	1	0.0984	TRUE	465	1949	224	605	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	13	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	15082	29688	0	0	0.0752	0.0174	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.0926	FALSE	183	104	9	328	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	3	43	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.0174	0.2488	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.94	1	0.2662	FALSE	344	821	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	5	35	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	38	0	0.51	1	0.0289	0.2025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.51	1	0.2314	FALSE	344	826	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TN	5	34	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0.1968	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIN87_STOMACH	1	1	0.2257	FALSE	369	2501	205	193	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TC	11	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0637	0.0405	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIN87_STOMACH	1	1	0.1042	FALSE	462	80	0	856	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TN	8	19	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0.1099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIN87_STOMACH	1	1	0.1562	FALSE	369	2501	205	193	0	FALSE	ACH-000427
NCIN87_STOMACH	RP11-120D5.1--MID1	12	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	59	0.75	0.2	0.0694	0.0174	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIN87_STOMACH	0.2	0.75	0.0868	FALSE	16	356	14	466	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	12	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	12614	29707	0	0	0.0694	0.0058	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.0752	FALSE	183	104	9	328	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TN	3	36	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0174	0.2083	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIN87_STOMACH	1	1	0.2257	FALSE	369	2501	205	193	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	3	35	MT-ND4	1264	chrM:11023:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	61	0	0.38	1	0.0174	0.2025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.38	1	0.2199	FALSE	344	827	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	3	35	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	41	0	0.48	1	0.0174	0.2025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.48	1	0.2199	FALSE	344	826	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	3	35	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	6332	0	0.01	1	0.0174	0.2025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.01	1	0.2199	FALSE	344	827	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	5	26	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	36	0	0.46	1	0.0289	0.1505	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.46	1	0.1794	FALSE	344	826	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-RNR2	10	2	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	13946	10384	0	0	0.0579	0.0116	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIN87_STOMACH	0	0	0.0695	FALSE	63	17	1	58	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	3	28	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	14	0	0.69	1	0.0174	0.162	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.69	1	0.1794	FALSE	344	826	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	OR51S1--TP53I11	10	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIN87_STOMACH	1	1	0.0579	TRUE	402	216	10	229	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-RNR2	9	2	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	13920	10399	0	0	0.0521	0.0116	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIN87_STOMACH	0	0	0.0637	FALSE	63	17	1	58	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	3	26	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	31	0	0.48	1	0.0174	0.1505	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.48	1	0.1679	FALSE	344	826	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-RNR2	9	1	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	12102	0	0	1	0.0521	0.0058	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIN87_STOMACH	0	1	0.0579	FALSE	63	17	1	58	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	4	19	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	39	0	0.37	1	0.0231	0.1099	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.37	1	0.133	FALSE	344	826	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	LGALS3BP--KRT18	8	2	LGALS3BP	4100	chr17:76972120:-	KRT18	11864	chr12:53342905:+	INCL_NON_REF_SPLICE	YES	2454	6	0	0.62	0.0463	0.0116	LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,KRT18->chr12:53342655-53346685:+,keratin_18	NCIN87_STOMACH	0	0.62	0.0579	FALSE	0	0	0	9	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	6	10	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4131	29996	0	0	0.0347	0.0579	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.0926	FALSE	183	104	9	328	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-RNR2	8	2	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	12782	10899	0	0	0.0463	0.0116	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIN87_STOMACH	0	0	0.0579	FALSE	63	17	1	58	0	FALSE	ACH-000427
NCIN87_STOMACH	NUTM2A-AS1--MINPP1	3	21	NUTM2A-AS1	7572	chr10:89086387:-	MINPP1	27523	chr10:89268093:+	ONLY_REF_SPLICE	YES	95	82	0.2	0.23	0.0174	0.1215	GTEx_FI:{Skin=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	NCIN87_STOMACH	0.2	0.23	0.1389	TRUE	3	0	0	3	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIN87_STOMACH	1	1	0.0463	FALSE	462	80	0	856	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TN	8	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIN87_STOMACH	1	1	0.0463	FALSE	369	2501	205	193	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND6--MT-TE	4	15	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0231	0.0868	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIN87_STOMACH	1	1	0.1099	FALSE	499	1288	110	792	0	FALSE	ACH-000427
NCIN87_STOMACH	RP11-96H19.1--RP11-446N19.1	7	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0405	0.0174	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIN87_STOMACH	1	1	0.0579	FALSE	407	2205	196	549	0	FALSE	ACH-000427
NCIN87_STOMACH	C15orf57--CBX3	4	14	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	54	52	0.25	0.26	0.0231	0.081	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIN87_STOMACH	0.25	0.26	0.1041	TRUE	267	562	48	632	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TC	5	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0.0579	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIN87_STOMACH	1	1	0.0868	FALSE	462	80	0	856	0	FALSE	ACH-000427
NCIN87_STOMACH	LMNA--RAB25	6	5	LMNA	8776	chr1:156085065:+	RAB25	26169	chr1:156038061:+	ONLY_REF_SPLICE	YES	1152	501	0.01	0.02	0.0347	0.0289	LOCAL_REARRANGEMENT:+:[12069],LMNA->chr1:156052364-156109880:+,lamin_A/C,RAB25->RAB25,_member_RAS_oncogene_family,chr1:156030951-156040295:+	NCIN87_STOMACH	0.01	0.02	0.0636	FALSE	0	0	0	1	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	7	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11989	29688	0	0	0.0405	0.0058	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.0463	FALSE	183	104	9	328	0	FALSE	ACH-000427
NCIN87_STOMACH	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIN87_STOMACH	1	1	0.0405	FALSE	13	9	0	364	0	FALSE	ACH-000427
NCIN87_STOMACH	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIN87_STOMACH	1	1	0.0405	FALSE	13	9	0	364	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	5	8	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	85	0	0.13	1	0.0289	0.0463	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.13	1	0.0752	FALSE	344	827	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	RP11-108K3.1--GLDN	5	8	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0289	0.0463	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIN87_STOMACH	0.93	1	0.0752	FALSE	0	19	0	46	0	FALSE	ACH-000427
NCIN87_STOMACH	AP000350.4--PKM	4	11	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	36	1	0.29	0.0231	0.0637	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	NCIN87_STOMACH	0.29	1	0.0868	TRUE	0	0	0	14	0	TRUE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	6	3	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	14986	27685	0	0	0.0347	0.0174	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.0521	FALSE	183	104	9	328	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	6	3	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.0347	0.0174	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.69	1	0.0521	FALSE	344	821	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	SLC1A5--MT-ND4L	6	3	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	2857	0	0	1	0.0347	0.0174	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0	1	0.0521	FALSE	0	0	0	189	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	5	6	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	15082	0	0	1	0.0289	0.0347	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	1	0.0636	FALSE	182	97	9	327	0	FALSE	ACH-000427
NCIN87_STOMACH	ACTN4--MT-CO1	6	1	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	2016	29318	0	0	0.0347	0.0058	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.0405	FALSE	0	0	0	30	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	4	9	MT-ATP6	1477	chrM:9003:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	NO	9975	26488	0	0	0.0231	0.0521	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.0752	FALSE	183	104	9	328	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	3	13	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	2	2	0.89	0.89	0.0174	0.0752	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.89	0.89	0.0926	FALSE	344	821	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	ALDOA--KRT17	6	0	ALDOA	7476	chr16:30077248:+	KRT17	15303	chr17:39780798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	NCIN87_STOMACH	1	1	0.0347	TRUE	0	0	0	10	0	TRUE	ACH-000427
NCIN87_STOMACH	C17orf76-AS1--RPL23	6	0	C17orf76-AS1	1593	chr17:16342728:+	RPL23	14314	chr17:37008985:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	C17orf76-AS1->chr17:16342136-16381992:+,RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23	NCIN87_STOMACH	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	4	8	MT-ATP6	1420	chrM:8946:+	MT-CO1	5125	chrM:6347:+	INCL_NON_REF_SPLICE	YES	14050	26696	0	0	0.0231	0.0463	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.0694	FALSE	183	104	9	328	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	4	8	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	41	0	0.23	1	0.0231	0.0463	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.23	1	0.0694	FALSE	344	826	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TN	6	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIN87_STOMACH	1	1	0.0347	FALSE	369	2501	205	193	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	4	7	MT-ND4	1031	chrM:10790:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	4	1	0.73	0.92	0.0231	0.0405	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.73	0.92	0.0636	FALSE	344	821	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	AP000350.4--PKM	3	10	AP000350.4	3774	chr22:24236611:-	PKM	7428	chr15:72523509:-	INCL_NON_REF_SPLICE	YES	0	37	1	0.26	0.0174	0.0579	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	NCIN87_STOMACH	0.26	1	0.0753	TRUE	0	0	0	14	0	TRUE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	3	10	MT-ATP6	1543	chrM:9069:+	MT-CO1	5325	chrM:6547:+	INCL_NON_REF_SPLICE	NO	4991	29843	0	0	0.0174	0.0579	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.0753	FALSE	183	104	9	328	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	3	10	MT-ATP6	1537	chrM:9063:+	MT-CO1	5319	chrM:6541:+	INCL_NON_REF_SPLICE	YES	5403	29353	0	0	0.0174	0.0579	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.0753	FALSE	183	104	9	328	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	4	6	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.83	0.0231	0.0347	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.83	1	0.0578	FALSE	344	821	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	5	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	12437	27033	0	0	0.0289	0.0058	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.0347	FALSE	183	104	9	328	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1121	chrM:8647:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	YES	12428	10216	0	0	0.0289	0.0058	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIN87_STOMACH	0	0	0.0347	FALSE	63	17	1	58	0	FALSE	ACH-000427
NCIN87_STOMACH	RP11-108K3.1--GLDN	4	5	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0.0289	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIN87_STOMACH	1	1	0.052	FALSE	0	30	1	55	0	FALSE	ACH-000427
NCIN87_STOMACH	AL136376.1--RPS28	5	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIN87_STOMACH	1	1	0.0289	TRUE	0	0	0	12	0	TRUE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-RNR2	3	8	MT-ATP6	1516	chrM:9042:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	YES	7158	10075	0	0	0.0174	0.0463	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIN87_STOMACH	0	0	0.0637	FALSE	63	17	1	58	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	3	8	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	45	0	0.2	1	0.0174	0.0463	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.2	1	0.0637	FALSE	344	826	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND6--MT-TE	5	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIN87_STOMACH	1	1	0.0289	FALSE	499	1288	110	792	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TN	5	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIN87_STOMACH	1	1	0.0289	FALSE	369	2501	205	193	0	FALSE	ACH-000427
NCIN87_STOMACH	RP11-114H23.1--RP11-114H23.2	4	4	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0231	0.0231	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIN87_STOMACH	0.89	1	0.0462	FALSE	81	155	12	160	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	4	3	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	14326	27736	0	0	0.0231	0.0174	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.0405	FALSE	183	104	9	328	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TC	3	7	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0174	0.0405	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIN87_STOMACH	1	1	0.0579	FALSE	462	80	0	856	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TC	3	7	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0174	0.0405	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIN87_STOMACH	1	1	0.0579	FALSE	462	80	0	856	0	FALSE	ACH-000427
NCIN87_STOMACH	RP11-120D5.1--MID1	4	3	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	5	59	0.58	0.11	0.0231	0.0174	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIN87_STOMACH	0.11	0.58	0.0405	FALSE	0	9	0	55	0	FALSE	ACH-000427
NCIN87_STOMACH	ACTN4--MT-CO1	4	2	ACTN4	15641	chr19:39214935:+	MT-CO1	26365	chrM:6550:+	INCL_NON_REF_SPLICE	YES	1910	29660	0	0	0.0231	0.0116	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.0347	FALSE	0	0	0	30	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	3	5	MT-ATP6	1400	chrM:8926:+	MT-CO1	5381	chrM:6603:+	INCL_NON_REF_SPLICE	YES	15178	29347	0	0	0.0174	0.0289	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.0463	FALSE	183	104	9	328	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1123	chrM:8649:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	12440	10620	0	0	0.0231	0.0058	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIN87_STOMACH	0	0	0.0289	FALSE	63	17	1	58	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND4--MT-ND4L	4	1	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.83	0.0231	0.0058	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIN87_STOMACH	0.83	1	0.0289	FALSE	344	821	44	306	0	FALSE	ACH-000427
NCIN87_STOMACH	HSPBP1--GRK5	4	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0231	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIN87_STOMACH	1	1	0.0231	TRUE	1	39	0	134	39	FALSE	ACH-000427
NCIN87_STOMACH	HSPBP1--GRK5	4	0	HSPBP1	1855	chr19:55790895:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0231	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIN87_STOMACH	1	1	0.0231	TRUE	1	39	0	134	39	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	3	4	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	13622	0	0	1	0.0174	0.0231	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	1	0.0405	FALSE	182	97	9	327	0	FALSE	ACH-000427
NCIN87_STOMACH	RCC1--ANXA2	4	0	RCC1	2175	chr1:28834672:+	ANXA2	35637	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ANXA2->annexin_A2,chr15:60639333-60695082:-	NCIN87_STOMACH	1	1	0.0231	TRUE	0	0	0	2	0	TRUE	ACH-000427
NCIN87_STOMACH	RCC1--ICA1	4	0	RCC1	2175	chr1:28834672:+	ICA1	32692	chr7:8183602:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ICA1->chr7:8152814-8302317:-,islet_cell_autoantigen_1	NCIN87_STOMACH	1	1	0.0231	TRUE	0	6	0	3	2	TRUE	ACH-000427
NCIN87_STOMACH	RP11-108K3.1--GLDN	3	4	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0.0231	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIN87_STOMACH	1	1	0.0405	FALSE	1	20	0	46	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	3	3	MT-ATP6	1174	chrM:8700:+	MT-CO1	5204	chrM:6426:+	INCL_NON_REF_SPLICE	YES	16147	26818	0	0	0.0174	0.0174	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.0348	FALSE	183	104	9	328	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TC	3	3	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0174	0.0174	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIN87_STOMACH	1	1	0.0348	FALSE	462	80	0	856	0	FALSE	ACH-000427
NCIN87_STOMACH	RP11-680G10.1--GSE1	3	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	17	1	0.26	0.0174	0.0174	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIN87_STOMACH	0.26	1	0.0348	TRUE	458	1351	185	561	0	FALSE	ACH-000427
NCIN87_STOMACH	ACTN4--KRT17	3	2	ACTN4	21069	chr19:39220574:+	KRT17	26016	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	1332	14	0	0.26	0.0174	0.0116	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,KRT17->chr17:39775689-39781094:-,keratin_17	NCIN87_STOMACH	0	0.26	0.029	FALSE	0	0	0	1	0	FALSE	ACH-000427
NCIN87_STOMACH	LGALS3BP--KRT18	3	2	LGALS3BP	4113	chr17:76972107:-	KRT18	11877	chr12:53342918:+	INCL_NON_REF_SPLICE	YES	2396	8	0	0.38	0.0174	0.0116	LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,KRT18->chr12:53342655-53346685:+,keratin_18	NCIN87_STOMACH	0	0.38	0.029	FALSE	0	0	0	9	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	12784	0	0	1	0.0174	0.0116	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIN87_STOMACH	0	1	0.029	FALSE	63	17	1	58	0	FALSE	ACH-000427
NCIN87_STOMACH	EWSR1--EEF1A1P6	3	1	EWSR1	21270	chr22:29695687:+	EEF1A1P6	25896	chr7:22550821:-	INCL_NON_REF_SPLICE	YES	979	3039	0	0	0.0174	0.0058	EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,EEF1A1P6->chr7:22550231-22551618:-,eukaryotic_translation_elongation_factor_1_alpha_1_pseudogene_6	NCIN87_STOMACH	0	0	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12437	29688	0	0	0.0174	0.0058	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.0232	FALSE	183	104	9	328	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	3	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	11607	27365	0	0	0.0174	0.0058	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	0	0	0.0232	FALSE	183	104	9	328	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1132	chrM:8658:+	MT-RNR2	5436	chrM:2425:+	INCL_NON_REF_SPLICE	YES	12784	12157	0	0	0.0174	0.0058	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIN87_STOMACH	0	0	0.0232	FALSE	63	17	1	58	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1125	chrM:8651:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	12528	10384	0	0	0.0174	0.0058	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIN87_STOMACH	0	0	0.0232	FALSE	63	17	1	58	0	FALSE	ACH-000427
NCIN87_STOMACH	ALDOA--KRT17	3	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0174	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	NCIN87_STOMACH	1	1	0.0174	TRUE	0	0	0	10	0	TRUE	ACH-000427
NCIN87_STOMACH	CPSF6--C9orf3	3	0	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	NCIN87_STOMACH	1	1	0.0174	TRUE	53	99	2	44	0	FALSE	ACH-000427
NCIN87_STOMACH	HSPBP1--GRK5	3	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0174	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIN87_STOMACH	1	1	0.0174	TRUE	1	39	0	134	39	FALSE	ACH-000427
NCIN87_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1383	chrM:8909:+	MT-CO1	5905	chrM:7127:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0174	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIN87_STOMACH	1	1	0.0174	FALSE	183	104	9	328	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0174	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIN87_STOMACH	1	1	0.0174	FALSE	499	1288	110	792	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0174	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIN87_STOMACH	1	1	0.0174	FALSE	499	1288	110	792	0	FALSE	ACH-000427
NCIN87_STOMACH	MT-TA--MT-TN	3	0	MT-TA	1067	chrM:5589:-	MT-TN	4133	chrM:5666:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0174	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIN87_STOMACH	1	1	0.0174	FALSE	369	2501	205	193	0	FALSE	ACH-000427
NCIN87_STOMACH	RP11-120D5.1--MID1	3	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIN87_STOMACH	1	1	0.0174	FALSE	0	48	1	163	0	FALSE	ACH-000427
NCIN87_STOMACH	RP11-108K3.1--GLDN	2	3	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0.0174	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIN87_STOMACH	1	1	0.029	FALSE	1	20	0	46	0	FALSE	ACH-000427
NCIN87_STOMACH	RPS6KB1--VMP1	2	3	RPS6KB1	1240	chr17:57970686:+	VMP1	37383	chr17:57895073:+	ONLY_REF_SPLICE	YES	88	271	0.05	0.02	0.0116	0.0174	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIN87_STOMACH	0.02	0.05	0.029	TRUE	0	0	0	3	0	FALSE	ACH-000427
NCIN87_STOMACH	VTI1A--RP11-57H14.3	2	3	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	69	0	0.07	1	0.0116	0.0174	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIN87_STOMACH	0.07	1	0.029	FALSE	272	151	14	158	0	FALSE	ACH-000427
NCIN87_STOMACH	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0.0116	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIN87_STOMACH	1	1	0.0232	FALSE	515	4851	409	746	0	FALSE	ACH-000427
NCIN87_STOMACH	PICALM--SYTL2	2	1	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	319	251	0.01	0.01	0.0116	0.0058	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	NCIN87_STOMACH	0.01	0.01	0.0174	FALSE	4	2	0	20	0	FALSE	ACH-000427
NCIN87_STOMACH	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0116	0.0058	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIN87_STOMACH	0.75	1	0.0174	TRUE	62	24	1	171	0	FALSE	ACH-000427
NCIN87_STOMACH	BCAR3--EVI5	2	0	BCAR3	2227	chr1:94311123:-	EVI5	50877	chr1:93029294:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,EVI5->chr1:92974253-93257961:-,ecotropic_viral_integration_site_5	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	CAPN2--SH3YL1	2	0	CAPN2	3855	chr1:223905533:+	SH3YL1	50567	chr2:231191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	CAPN2->calpain_2,chr1:223889295-223963720:+,SH3YL1->SH3_and_SYLF_domain_containing_1,chr2:217730-266398:-	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	CD58--ZXDC	2	0	CD58	1137	chr1:117113525:-	ZXDC	21013	chr3:126160789:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	CD58->CD58_molecule,chr1:117057157-117113661:-,ZXDC->ZXD_family_zinc_finger_C,chr3:126156444-126194762:-	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	MCTP1--ANKRD32	2	0	MCTP1	32735	chr5:94114815:-	ANKRD32	47559	chr5:93964516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	NEIGHBORS_OVERLAP:-:+:[35695],MCTP1->chr5:94039446-94620279:-,multiple_C2_and_transmembrane_domain_containing_1,ANKRD32->chr5:93954052-94075141:+	NCIN87_STOMACH	1	1	0.0116	FALSE	0	0	0	1	0	FALSE	ACH-000427
NCIN87_STOMACH	PARD3--CUL2	2	0	PARD3	25487	chr10:34606035:-	CUL2	40065	chr10:35360267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,CUL2->chr10:35297479-35379570:-,cullin_2	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	RAB14--MRRF	2	0	RAB14	3046	chr9:123963917:-	MRRF	24003	chr9:125075506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	RAB14->RAB14,_member_RAS_oncogene_family,chr9:123940415-123985292:-,MRRF->chr9:125026882-125085743:+,mitochondrial_ribosome_recycling_factor	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	RCC1--ANXA2	2	0	RCC1	2175	chr1:28834672:+	ANXA2	33306	chr15:60674640:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ANXA2->annexin_A2,chr15:60639333-60695082:-	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	RP11-120D5.1--MID1	1	4	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	59	0.83	0.08	0.0058	0.0231	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIN87_STOMACH	0.08	0.83	0.0289	FALSE	2	31	0	60	0	FALSE	ACH-000427
NCIN87_STOMACH	SLC25A3--AGO2	2	0	SLC25A3	5397	chr12:98992481:+	AGO2	22071	chr8:141567335:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	SLC25A3->chr12:98987369-98995946:+,solute_carrier_family_25_member_3,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	TAF1--GSPT1	2	0	TAF1	34621	chrX:70680653:+	GSPT1	50444	chr16:11991892:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	TAF1->ArcherDX_panel,FoundationOne_panel,TATA-box_binding_protein_associated_factor_1,chrX:70586114-70752224:+,GSPT1->G1_to_S_phase_transition_1,Oncogene{Bushman},chr16:11961985-12009939:-	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	USP47--YAF2	2	0	USP47	13852	chr11:11944438:+	YAF2	52127	chr12:42555567:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0	USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-	NCIN87_STOMACH	1	1	0.0116	TRUE	0	0	0	1	0	TRUE	ACH-000427
NCIN87_STOMACH	MED1--CDK12	1	3	MED1	6915	chr17:37595418:-	CDK12	30800	chr17:37646810:+	ONLY_REF_SPLICE	YES	733	939	0.01	0	0.0058	0.0174	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_INVERSION:-:+:[10225],MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	NCIN87_STOMACH	0	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000427
NCIN87_STOMACH	RPS6KB1--VMP1	1	3	RPS6KB1	1839	chr17:57971285:+	VMP1	37383	chr17:57895073:+	ONLY_REF_SPLICE	YES	92	271	0.04	0.01	0.0058	0.0174	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIN87_STOMACH	0.01	0.04	0.0232	FALSE	0	0	0	3	0	FALSE	ACH-000427
NCIN87_STOMACH	ANXA3--FRAS1	1	2	ANXA3	10136	chr4:79512777:+	FRAS1	88991	chr4:79410029:+	ONLY_REF_SPLICE	YES	674	49	0	0.06	0.0058	0.0116	LOCAL_REARRANGEMENT:+:[7250],ANXA3->annexin_A3,chr4:79472673-79531597:+,FRAS1->Fraser_extracellular_matrix_complex_subunit_1,chr4:78978724-79465423:+	NCIN87_STOMACH	0	0.06	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000427
NCIN87_STOMACH	MED1--CDK12	1	2	MED1	7987	chr17:37590502:-	CDK12	36535	chr17:37667782:+	ONLY_REF_SPLICE	YES	606	1042	0	0	0.0058	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_INVERSION:-:+:[10225],MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	NCIN87_STOMACH	0	0	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000427
NCIN87_STOMACH	ABCB7--UPRT	1	1	ABCB7	3796	chrX:74332721:-	UPRT	26096	chrX:74516177:+	ONLY_REF_SPLICE	NO	96	17	0.02	0.11	0.0058	0.0058	ABCB7->ATP_binding_cassette_subfamily_B_member_7,chrX:74273115-74376567:-,UPRT->chrX:74493920-74524435:+,uracil_phosphoribosyltransferase_homolog	NCIN87_STOMACH	0.02	0.11	0.0116	TRUE	0	0	0	1	0	FALSE	ACH-000427
NCIN87_STOMACH	C17orf76-AS1--SEPT9	1	1	C17orf76-AS1	1593	chr17:16342728:+	SEPT9	45890	chr17:75483506:+	ONLY_REF_SPLICE	YES	144	451	0.01	0	0.0058	0.0058	C17orf76-AS1->chr17:16342136-16381992:+,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	NCIN87_STOMACH	0	0.01	0.0116	FALSE	0	3	0	6	0	FALSE	ACH-000427
NCIN87_STOMACH	GNA12--MAD1L1	1	1	GNA12	4638	chr7:2834562:-	MAD1L1	43322	chr7:2054277:-	ONLY_REF_SPLICE	NO	74	56	0.03	0.03	0.0058	0.0058	GNA12->G_protein_subunit_alpha_12,Oncogene{Bushman},chr7:2767746-2883958:-,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	NCIN87_STOMACH	0.03	0.03	0.0116	TRUE	0	0	0	1	0	FALSE	ACH-000427
NCIN87_STOMACH	JARID2--RANBP9	1	1	JARID2	1289	chr6:15246815:+	RANBP9	31984	chr6:13659064:-	ONLY_REF_SPLICE	YES	18	52	0.1	0.04	0.0058	0.0058	JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,RANBP9->RAN_binding_protein_9,chr6:13621730-13711796:-	NCIN87_STOMACH	0.04	0.1	0.0116	TRUE	0	0	0	1	0	FALSE	ACH-000427
NCIN87_STOMACH	MAST2--SKP1	1	1	MAST2	4897	chr1:46295253:+	SKP1	36250	chr5:133509713:-	ONLY_REF_SPLICE	YES	45	262	0.04	0.01	0.0058	0.0058	MAST2->chr1:46252659-46501796:+,microtubule_associated_serine/threonine_kinase_2,SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-	NCIN87_STOMACH	0.01	0.04	0.0116	FALSE	0	0	0	1	0	FALSE	ACH-000427
NCIN87_STOMACH	PAWR--RP1-78O14.1	1	1	PAWR	13714	chr12:79990291:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	224	0	0.01	1	0.0058	0.0058	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	NCIN87_STOMACH	0.01	1	0.0116	FALSE	1	1	0	4	0	FALSE	ACH-000427
NCIN87_STOMACH	PLSCR1--PARL	1	1	PLSCR1	1398	chr3:146262254:-	PARL	26630	chr3:183551377:-	ONLY_REF_SPLICE	YES	364	400	0.01	0	0.0058	0.0058	PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1,PARL->chr3:183547173-183602721:-,presenilin_associated_rhomboid_like	NCIN87_STOMACH	0	0.01	0.0116	FALSE	0	0	0	1	0	FALSE	ACH-000427
NCIN87_STOMACH	XPO1--CCT4	1	1	XPO1	18202	chr2:61719170:-	CCT4	34653	chr2:62110683:-	ONLY_REF_SPLICE	YES	501	1357	0	0	0.0058	0.0058	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Lymphoid=1},XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1,CCT4->chaperonin_containing_TCP1_subunit_4,chr2:62095224-62115939:-	NCIN87_STOMACH	0	0	0.0116	FALSE	0	0	0	1	0	FALSE	ACH-000427
VMRCRCW_KIDNEY	FAM109A--RP3-473L9.4	36	14	FAM109A	2355	chr12:111803917:-	RP3-473L9.4	13184	chr12:111840942:+	ONLY_REF_SPLICE	YES	11	0	0.82	1	0.6857	0.2667	LOCAL_INVERSION:-:+:[161],FAM109A->chr12:111798455-111806925:-,family_with_sequence_similarity_109_member_A,RP3-473L9.4->chr12:111807086-111841114:+	VMRCRCW_KIDNEY	0.82	1	0.9524	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	MT-ND4--MT-ND4L	19	34	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	1543	0	0.03	1	0.3619	0.6476	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	VMRCRCW_KIDNEY	0.03	1	1.0095	FALSE	344	827	44	306	0	FALSE	ACH-000484
VMRCRCW_KIDNEY	MT-ND4--MT-ND4L	3	49	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	185	0	0.22	1	0.0571	0.9333	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	VMRCRCW_KIDNEY	0.22	1	0.9904	FALSE	344	827	44	306	0	FALSE	ACH-000484
VMRCRCW_KIDNEY	RP11-96H19.1--RP11-446N19.1	8	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1524	0.019	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	VMRCRCW_KIDNEY	1	1	0.1714	FALSE	515	4851	409	746	0	FALSE	ACH-000484
VMRCRCW_KIDNEY	MT-TA--MT-TC	6	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1143	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	VMRCRCW_KIDNEY	1	1	0.1143	FALSE	462	80	0	856	0	FALSE	ACH-000484
VMRCRCW_KIDNEY	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0952	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	VMRCRCW_KIDNEY	1	1	0.0952	FALSE	292	1546	117	613	0	FALSE	ACH-000484
VMRCRCW_KIDNEY	COX16--MT-CO2	3	0	COX16	1079	chr14:70826370:-	MT-CO2	10126	chrM:7687:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0	COX16->COX16_cytochrome_c_oxidase_assembly_homolog,chr14:70791798-70826448:-,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	VMRCRCW_KIDNEY	1	1	0.0571	FALSE	0	0	0	1	0	FALSE	ACH-000484
VMRCRCW_KIDNEY	DDIT4--DDX17	3	0	DDIT4	2372	chr10:74035049:+	DDX17	20697	chr22:38883930:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0	DDIT4->DNA_damage_inducible_transcript_4,chr10:74033678-74035794:+,DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-	VMRCRCW_KIDNEY	1	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	GPSM1--NDUFB10	3	0	GPSM1	13559	chr9:139249330:+	NDUFB10	20870	chr16:2009555:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0	GPSM1->G-protein_signaling_modulator_1,chr9:139221932-139254057:+,NDUFB10->NADH:ubiquinone_oxidoreductase_subunit_B10,chr16:2009509-2011976:+	VMRCRCW_KIDNEY	1	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	LDLRAD2--CTSD	3	0	LDLRAD2	6263	chr1:22149375:+	CTSD	18168	chr11:1776213:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0	LDLRAD2->chr1:22138758-22151714:+,low_density_lipoprotein_receptor_class_A_domain_containing_2,CTSD->cathepsin_D,chr11:1773982-1785222:-	VMRCRCW_KIDNEY	1	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	SPRED2--TRIM25	3	0	SPRED2	1669	chr2:65659103:-	TRIM25	28965	chr17:54967220:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0	SPRED2->chr2:65537985-65659771:-,sprouty_related_EVH1_domain_containing_2,TRIM25->chr17:54965270-54991399:-,tripartite_motif_containing_25	VMRCRCW_KIDNEY	1	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	TANC1--ACVR1	3	0	TANC1	3335	chr2:159922483:+	ACVR1	57703	chr2:158595082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0571	0	GTEx&tcga_normals:1/3694=0.03%,TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,ACVR1->activin_A_receptor_type_1,chr2:158592958-158732374:-	VMRCRCW_KIDNEY	1	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	TIMM23--RP11-464F9.1	3	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0571	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	VMRCRCW_KIDNEY	1	1	0.0571	TRUE	519	3926	326	965	0	FALSE	ACH-000484
VMRCRCW_KIDNEY	TMEM144--RP11-321N4.5	3	0	TMEM144	10311	chr4:159140542:+	RP11-321N4.5	26974	chr6:86284096:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0571	0	TMEM144->chr4:159122756-159176563:+,transmembrane_protein_144,RP11-321N4.5->chr6:86267696-86324952:-	VMRCRCW_KIDNEY	1	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	VAT1--STAG3L3	3	0	VAT1	7609	chr17:41168017:-	STAG3L3	12062	chr7:72476388:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0	VAT1->chr17:41166622-41177140:-,vesicle_amine_transport_1,STAG3L3->chr7:72440227-72476445:-,stromal_antigen_3-like_3_(pseudogene)	VMRCRCW_KIDNEY	1	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	ATP8B3--REXO1	2	2	ATP8B3	6342	chr19:1806627:-	REXO1	27949	chr19:1830865:-	ONLY_REF_SPLICE	YES	3	4	0.57	0.5	0.0381	0.0381	LOCAL_REARRANGEMENT:-:[2973],ATP8B3->ATPase_phospholipid_transporting_8B3,chr19:1782074-1812275:-,REXO1->REX1,_RNA_exonuclease_1_homolog,chr19:1815248-1848452:-	VMRCRCW_KIDNEY	0.5	0.57	0.0762	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	AC005355.2--SNF8	2	0	AC005355.2	1283	chr5:133842525:+	SNF8	7250	chr17:47021337:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	AC005355.2->chr5:133842243-133844920:+,SNF8->SNF8,_ESCRT-II_complex_subunit,chr17:47006678-47022479:-	VMRCRCW_KIDNEY	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	MBTD1--TRIM25	2	0	MBTD1	2021	chr17:49336504:-	TRIM25	29258	chr17:54981849:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1,TRIM25->chr17:54965270-54991399:-,tripartite_motif_containing_25	VMRCRCW_KIDNEY	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	RNF19A--YME1L1	2	0	RNF19A	4601	chr8:101322095:-	YME1L1	29123	chr10:27434519:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	RNF19A->chr8:101269288-101348446:-,ring_finger_protein_19A,_RBR_E3_ubiquitin_protein_ligase,YME1L1->YME1_like_1_ATPase,chr10:27399383-27444195:-	VMRCRCW_KIDNEY	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	TTC27--HSPA9	2	0	TTC27	3657	chr2:32859072:+	HSPA9	39503	chr5:137894346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	VMRCRCW_KIDNEY	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	UHRF1BP1L--GLS	2	0	UHRF1BP1L	1257	chr12:100536370:-	GLS	36198	chr2:191765290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-,GLS->chr2:191745553-191830278:+,glutaminase	VMRCRCW_KIDNEY	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	WDR61--ZNF519	2	0	WDR61	7650	chr15:78581961:-	ZNF519	25666	chr18:14101772:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	WDR61->WD_repeat_domain_61,chr15:78570177-78592136:-,ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519	VMRCRCW_KIDNEY	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	ZNF66--B2M	2	0	ZNF66	4542	chr19:20976684:+	B2M	15695	chr15:45007621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	ZNF66->chr19:20959110-20991922:+,zinc_finger_protein_66,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	VMRCRCW_KIDNEY	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000484
VMRCRCW_KIDNEY	ATP8B3--REXO1	1	1	ATP8B3	6342	chr19:1806627:-	REXO1	29110	chr19:1828630:-	ONLY_REF_SPLICE	NO	3	4	0.4	0.33	0.019	0.019	LOCAL_REARRANGEMENT:-:[2973],ATP8B3->ATPase_phospholipid_transporting_8B3,chr19:1782074-1812275:-,REXO1->REX1,_RNA_exonuclease_1_homolog,chr19:1815248-1848452:-	VMRCRCW_KIDNEY	0.33	0.4	0.038	TRUE	0	0	0	1	0	TRUE	ACH-000484
SNU878_LIVER	AC017048.3--OLA1	12	4	AC017048.3	1470	chr2:177502190:-	OLA1	14354	chr2:175006728:-	ONLY_REF_SPLICE	YES	2	112	0.89	0.12	0.2097	0.0699	AC017048.3->chr2:177494317-177502659:-,OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-	SNU878_LIVER	0.12	0.89	0.2796	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	TIMM23B--LINC00843	9	1	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1573	0.0175	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU878_LIVER	1	1	0.1748	TRUE	508	994	45	981	0	FALSE	ACH-000686
SNU878_LIVER	MT-TA--MT-TC	9	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1573	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU878_LIVER	1	1	0.1573	FALSE	462	80	0	856	0	FALSE	ACH-000686
SNU878_LIVER	ALDH3B1--UNC93B1	7	0	ALDH3B1	3680	chr11:67782929:+	UNC93B1	21290	chr11:67767150:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1223	0	LOCAL_INVERSION:+:-:[3596],ALDH3B1->aldehyde_dehydrogenase_3_family_member_B1,chr11:67776048-67796744:+,UNC93B1->chr11:67758575-67772452:-,unc-93_homolog_B1_(C._elegans)	SNU878_LIVER	1	1	0.1223	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	MT-ATP6--MT-CO2	5	0	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0874	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU878_LIVER	1	1	0.0874	FALSE	59	21	0	114	0	FALSE	ACH-000686
SNU878_LIVER	MT-ND6--MT-TE	5	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0874	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU878_LIVER	1	1	0.0874	FALSE	499	1288	110	792	0	FALSE	ACH-000686
SNU878_LIVER	MT-ATP6--MT-RNR2	4	3	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	2641	2142	0	0	0.0699	0.0524	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU878_LIVER	0	0	0.1223	FALSE	63	17	1	58	0	FALSE	ACH-000686
SNU878_LIVER	MT-ND6--MT-TE	4	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0699	0.0175	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU878_LIVER	0.83	1	0.0874	FALSE	499	1288	110	792	0	FALSE	ACH-000686
SNU878_LIVER	HNRNPA3--TUBA4A	4	0	HNRNPA3	6062	chr2:178084210:+	TUBA4A	18709	chr2:220115517:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	HNRNPA3->Oncogene{Bushman},chr2:178077291-178088686:+,heterogeneous_nuclear_ribonucleoprotein_A3,TUBA4A->chr2:220114433-220142892:-,tubulin_alpha_4a	SNU878_LIVER	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	MT-TA--MT-TC	4	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU878_LIVER	1	1	0.0699	FALSE	462	80	0	856	0	FALSE	ACH-000686
SNU878_LIVER	MYEOV--RP11-554A11.9	4	0	MYEOV	8645	chr11:69156446:+	RP11-554A11.9	15199	chr11:68926914:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0699	0	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,RP11-554A11.9->chr11:68923378-68927220:+	SNU878_LIVER	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	2586	2041	0	0	0.0524	0.0349	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU878_LIVER	0	0	0.0873	FALSE	63	17	1	58	0	FALSE	ACH-000686
SNU878_LIVER	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	2594	2046	0	0	0.0524	0.0349	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU878_LIVER	0	0	0.0873	FALSE	63	17	1	58	0	FALSE	ACH-000686
SNU878_LIVER	ADCY3--FLAD1	3	0	ADCY3	19913	chr2:25046169:-	FLAD1	29725	chr1:154960893:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	ADCY3->adenylate_cyclase_3,chr2:25042038-25142708:-,FLAD1->chr1:154955814-154965587:+,flavin_adenine_dinucleotide_synthetase_1	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	AURKAIP1--MT-RNR2	3	0	AURKAIP1	2284	chr1:1309592:-	MT-RNR2	5789	chrM:1693:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	AURKAIP1->aurora_kinase_A_interacting_protein_1,chr1:1309110-1310875:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU878_LIVER	1	1	0.0524	FALSE	0	0	0	1	0	FALSE	ACH-000686
SNU878_LIVER	CRTC2--RPL39	3	0	CRTC2	6281	chr1:153923927:-	RPL39	12222	chrX:118925573:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	CRTC2->CREB_regulated_transcription_coactivator_2,Oncogene{Bushman},chr1:153920145-153931101:-,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	HIPK2--TMEM115	3	0	HIPK2	28988	chr7:139247827:-	TMEM115	33605	chr3:50396936:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	HIPK2->Oncogene{Bushman},chr7:139246316-139477577:-,homeodomain_interacting_protein_kinase_2,TMEM115->chr3:50392180-50397041:-,transmembrane_protein_115	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0524	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU878_LIVER	1	1	0.0524	FALSE	292	1546	117	613	0	FALSE	ACH-000686
SNU878_LIVER	PPM1H--ENO1	3	0	PPM1H	14286	chr12:63042357:-	ENO1	29398	chr1:8926544:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	PPM1H->chr12:63037762-63328817:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1H,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	SERPINE2--SPPL2A	3	0	SERPINE2	11415	chr2:224849544:-	SPPL2A	33276	chr15:51018320:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2,SPPL2A->chr15:50999506-51058005:-,signal_peptide_peptidase_like_2A	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	SF3B1--PPA1	3	0	SF3B1	13833	chr2:198267280:-	PPA1	34822	chr10:71969441:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0524	0	SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1,PPA1->chr10:71962586-71993667:-,pyrophosphatase_(inorganic)_1	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	TRIM2--DNAJB11	3	0	TRIM2	5858	chr4:154143750:+	DNAJB11	42229	chr3:186303400:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	TRIM2->chr4:154073494-154260472:+,tripartite_motif_containing_2,DNAJB11->DnaJ_heat_shock_protein_family_(Hsp40)_member_B11,chr3:186285192-186315061:+	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	UBA2--SPTAN1	3	0	UBA2	12314	chr19:34943052:+	SPTAN1	36037	chr9:131346750:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	UBA2->chr19:34919257-34960853:+,ubiquitin_like_modifier_activating_enzyme_2,SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	ZRANB3--SLC25A3	3	0	ZRANB3	2907	chr2:136261899:-	SLC25A3	44569	chr12:98993733:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0524	0	ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3,SLC25A3->chr12:98987369-98995946:+,solute_carrier_family_25_member_3	SNU878_LIVER	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	AEBP2--RP11-377D9.3	2	0	AEBP2	10040	chr12:19667718:+	RP11-377D9.3	22760	chr12:13174948:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,RP11-377D9.3->chr12:13153385-13193613:+	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	ANK2--TAX1BP1	2	0	ANK2	1156	chr4:113739420:+	TAX1BP1	85400	chr7:27831625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	ANK2->ankyrin_2,_neuronal,chr4:113739265-114304896:+,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	ANXA4--SAV1	2	0	ANXA4	5066	chr2:69969307:+	SAV1	32474	chr14:51111732:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	ANXA4->annexin_A4,chr2:69871557-70053596:+,SAV1->Oncogene{Bushman},chr14:51098776-51135049:-,salvador_family_WW_domain_containing_protein_1	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	C3orf83--HEATR1	2	0	C3orf83	3980	chr3:12586746:-	HEATR1	14884	chr1:236762924:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	C3orf83->chr3:12556433-12602558:-,HEATR1->HEAT_repeat_containing_1,chr1:236712305-236767804:-	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	CSTA--CCDC58	2	0	CSTA	1115	chr3:122044205:+	CCDC58	14550	chr3:122081874:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_INVERSION:+:-:[17619],CSTA->Oncogene{Bushman},chr3:122044091-122060819:+,cystatin_A,CCDC58->chr3:122078438-122102078:-,coiled-coil_domain_containing_58	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	EIF3C--RBX1	2	0	EIF3C	1271	chr16:28700149:+	RBX1	22870	chr22:41360051:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	EIF3C->Oncogene{Bushman},chr16:28699879-28747051:+,eukaryotic_translation_initiation_factor_3_subunit_C,RBX1->Oncogene{Bushman},chr22:41347351-41369313:+,ring-box_1	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	HAVCR1--TXNDC11	2	0	HAVCR1	5961	chr5:156476049:-	TXNDC11	20881	chr16:11794420:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	HAVCR1->chr5:156456424-156486130:-,hepatitis_A_virus_cellular_receptor_1,TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	HDDC2--RBM27	2	0	HDDC2	9625	chr6:125598248:-	RBM27	27867	chr5:145631274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	HDDC2->HD_domain_containing_2,chr6:125541108-125623282:-,RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	PDE7B--TBCE	2	0	PDE7B	2385	chr6:136268662:+	TBCE	27309	chr1:235582788:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	PDE7B->chr6:136172834-136516712:+,phosphodiesterase_7B,TBCE->chr1:235530675-235612283:+,tubulin_folding_cofactor_E	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	PPFIBP2--TASP1	2	0	PPFIBP2	17766	chr11:7642258:+	TASP1	54038	chr20:13514788:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	PPFIBP2->PPFIA_binding_protein_2,chr11:7534529-7678358:+,TASP1->chr20:13246709-13619587:-,taspase_1	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	PROSER2--ATP5C1	2	0	PROSER2	1132	chr10:11865469:+	ATP5C1	13799	chr10:7838084:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	PROSER2->chr10:11865338-11914276:+,proline_and_serine_rich_2,ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	PTPRC--BLZF1	2	0	PTPRC	2698	chr1:198661502:+	BLZF1	42010	chr1:169345778:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	PTPRC->chr1:198607801-198726545:+,protein_tyrosine_phosphatase,_receptor_type_C,BLZF1->basic_leucine_zipper_nuclear_factor_1,chr1:169337208-169365778:+	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	SEC22B--PRPF18	2	0	SEC22B	1402	chr1:145096621:+	PRPF18	15349	chr10:13642244:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+,PRPF18->chr10:13628927-13672868:+,pre-mRNA_processing_factor_18	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	SNHG16--ZNF189	2	0	SNHG16	1092	chr17:74553939:+	ZNF189	13355	chr9:104170211:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,ZNF189->chr9:104161155-104172942:+,zinc_finger_protein_189	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	STEAP3--EPT1	2	0	STEAP3	1081	chr2:119981464:+	EPT1	25699	chr2:26607827:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	STEAP3->STEAP3_metalloreductase,chr2:119981384-120023228:+,EPT1->chr2:26531415-26618759:+,ethanolaminephosphotransferase_1	SNU878_LIVER	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000686
SNU878_LIVER	XRCC5--RPL37A	2	0	XRCC5	2602	chr2:216974180:+	RPL37A	31413	chr2:217363993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	SNU878_LIVER	1	1	0.0349	TRUE	1	1	0	8	1	TRUE	ACH-000686
SNU878_LIVER	NCOA3--TASP1	1	1	NCOA3	1163	chr20:46130763:+	TASP1	30579	chr20:13610799:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0175	0.0175	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,TASP1->chr20:13246709-13619587:-,taspase_1	SNU878_LIVER	0.5	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000686
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--AC096579.7	1345	699	PVT1	1202	chr8:128806980:+	AC096579.7	31173	chr2:89157196:-	ONLY_REF_SPLICE	YES	59	1	0.97	1	11.6173	6.0375	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,AC096579.7->chr2:89130700-89165653:-	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	17.6548	TRUE	0	0	0	1	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--AC096579.7	206	842	PVT1	2457	chr8:128808254:+	AC096579.7	31173	chr2:89157196:-	ONLY_REF_SPLICE	YES	76	1	0.93	1	1.7793	7.2727	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,AC096579.7->chr2:89130700-89165653:-	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	9.052	TRUE	0	0	0	1	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--AC096579.7	124	860	PVT1	2520	chr8:128808317:+	AC096579.7	31173	chr2:89157196:-	ONLY_REF_SPLICE	YES	78	1	0.93	1	1.071	7.4281	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,AC096579.7->chr2:89130700-89165653:-	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	8.4991	TRUE	0	0	0	1	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	284	48	PTMA	6593	chr2:232577226:+	NCL	15607	chr2:232326275:-	INCL_NON_REF_SPLICE	YES	5103	2761	0.06	0.11	2.453	0.4146	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.11	2.8676	TRUE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--AC096579.7	73	885	PVT1	6936	chr8:128867565:+	AC096579.7	31173	chr2:89157196:-	ONLY_REF_SPLICE	YES	26	1	0.97	1	0.6305	7.6441	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,AC096579.7->chr2:89130700-89165653:-	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	8.2746	TRUE	0	0	0	1	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	164	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.4165	0.2678	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.6843	TRUE	508	994	45	981	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	120	13	PTMA	6593	chr2:232577226:+	NCL	16478	chr2:232325404:-	INCL_NON_REF_SPLICE	YES	5103	1948	0.03	0.06	1.0365	0.1123	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.06	1.1488	TRUE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	104	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8983	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8983	TRUE	0	0	0	518	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	93	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	247	6	0.28	0.94	0.8033	0.0259	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.94	0.8292	TRUE	519	3926	326	965	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	85	13	PTMA	6054	chr2:232576687:+	NCL	16410	chr2:232325472:-	INCL_NON_REF_SPLICE	YES	4847	2261	0.02	0.04	0.7342	0.1123	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.8465	TRUE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	50	13	PTMA	6054	chr2:232576687:+	NCL	16401	chr2:232325481:-	INCL_NON_REF_SPLICE	YES	4847	2218	0.01	0.03	0.4319	0.1123	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.5442	TRUE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	29	51	PTMA	6593	chr2:232577226:+	NCL	15493	chr2:232326389:-	INCL_NON_REF_SPLICE	YES	5103	2361	0.02	0.03	0.2505	0.4405	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.691	TRUE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	37	14	PTMA	6054	chr2:232576687:+	NCL	16320	chr2:232325562:-	INCL_NON_REF_SPLICE	YES	4847	2985	0.01	0.02	0.3196	0.1209	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.4405	TRUE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	33	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.285	0.0518	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3368	FALSE	499	1288	110	792	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	21	48	PTMA	6593	chr2:232577226:+	NCL	15589	chr2:232326293:-	INCL_NON_REF_SPLICE	YES	5103	2229	0.01	0.03	0.1814	0.4146	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.596	TRUE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	30	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2591	0.0086	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2677	FALSE	462	80	0	856	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	21	22	PTMA	6593	chr2:232577226:+	NCL	16427	chr2:232325455:-	INCL_NON_REF_SPLICE	YES	5103	2163	0.01	0.02	0.1814	0.19	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.3714	TRUE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	23	11	PTMA	6054	chr2:232576687:+	NCL	16446	chr2:232325436:-	INCL_NON_REF_SPLICE	YES	4847	2109	0.01	0.02	0.1987	0.095	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.2937	TRUE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	22	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.19	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.19	TRUE	0	0	0	434	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FADD--NARS2	19	8	FADD	1583	chr11:70049851:+	NARS2	15357	chr11:78204241:-	ONLY_REF_SPLICE	YES	34	27	0.44	0.5	0.1641	0.0691	FADD->Fas_associated_via_death_domain,chr11:70049269-70053496:+,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.5	0.2332	TRUE	0	0	0	1	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	6	52	PTMA	6593	chr2:232577226:+	NCL	15433	chr2:232326449:-	INCL_NON_REF_SPLICE	NO	5103	2474	0.01	0.02	0.0518	0.4491	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.5009	FALSE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	18	2	IGKV2-30	1681	chr2:89544399:-	AC096579.7	9026	chr2:89130914:-	INCL_NON_REF_SPLICE	YES	3	0	0.87	1	0.1555	0.0173	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	0.1728	TRUE	0	0	0	4	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	15	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1296	0.0518	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1814	FALSE	499	1288	110	792	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-29--PVT1	15	0	IGKV2-29	1050	chr2:89534344:-	PVT1	11676	chr8:128902835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1296	0	IGKV2-29->chr2:89533655-89534393:-,immunoglobulin_kappa_variable_2-29_(gene/pseudogene),PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1296	TRUE	0	0	0	1	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	21	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0777	0.1814	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2591	FALSE	499	1288	110	792	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	10	12	PTMA	6060	chr2:232576693:+	NCL	16446	chr2:232325436:-	ONLY_REF_SPLICE	YES	5299	2109	0	0.01	0.0864	0.1036	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.19	TRUE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	12	2	PTMA	6002	chr2:232576635:+	NCL	15445	chr2:232326437:-	INCL_NON_REF_SPLICE	NO	4981	2428	0	0.01	0.1036	0.0173	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1209	FALSE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	5	27	PTMA	6913	chr2:232577546:+	NCL	16421	chr2:232325461:-	INCL_NON_REF_SPLICE	YES	5225	2162	0.01	0.01	0.0432	0.2332	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.2764	TRUE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	11	2	PTMA	6002	chr2:232576635:+	NCL	15589	chr2:232326293:-	INCL_NON_REF_SPLICE	YES	4981	2229	0	0.01	0.095	0.0173	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1123	TRUE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	11	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	2591	0	0	1	0.095	0.0086	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1036	TRUE	0	0	0	100	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0691	0.1123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.1814	FALSE	499	1288	110	792	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	9	9	PTMA	6054	chr2:232576687:+	NCL	16488	chr2:232325394:-	INCL_NON_REF_SPLICE	YES	4847	1957	0	0.01	0.0777	0.0777	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1554	TRUE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	4	25	PTMA	6542	chr2:232577175:+	NCL	15574	chr2:232326308:-	INCL_NON_REF_SPLICE	YES	4349	2287	0.01	0.01	0.0345	0.2159	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.2504	TRUE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	9	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	33	41	0.28	0.24	0.0777	0.0345	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.28	0.1122	TRUE	267	562	48	632	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	6	15	PTMA	6060	chr2:232576693:+	NCL	16317	chr2:232325565:-	INCL_NON_REF_SPLICE	YES	5299	2983	0	0.01	0.0518	0.1296	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1814	TRUE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	5	18	PTMA	6060	chr2:232576693:+	NCL	13925	chr2:232327957:-	INCL_NON_REF_SPLICE	YES	5299	2416	0	0.01	0.0432	0.1555	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1987	TRUE	0	0	0	3	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	21	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0345	0.1814	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.2159	FALSE	499	1288	110	792	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0777	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0777	FALSE	462	80	0	856	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ETV3--RP11-336K24.5	8	1	ETV3	1159	chr1:157108108:-	RP11-336K24.5	15291	chr1:155971299:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0691	0.0086	ETV3->ETS_variant_3,Oncogene{Bushman},chr1:157090983-157108266:-,RP11-336K24.5->chr1:155961181-155971578:+	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.0777	TRUE	0	0	0	1	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	12	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0.1036	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1468	FALSE	499	1288	110	792	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	8	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0691	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0691	TRUE	477	1352	189	275	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	4	13	PTMA	6593	chr2:232577226:+	NCL	16481	chr2:232325401:-	INCL_NON_REF_SPLICE	YES	5103	1987	0	0.01	0.0345	0.1123	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1468	TRUE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	16	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0259	0.1382	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.1641	FALSE	499	1288	110	792	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0605	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0605	FALSE	499	1288	110	792	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	0.0086	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0604	FALSE	462	80	0	856	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	4	8	PTMA	6047	chr2:232576680:+	NCL	16424	chr2:232325458:-	INCL_NON_REF_SPLICE	NO	4846	2140	0	0.01	0.0345	0.0691	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1036	FALSE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0432	TRUE	0	0	0	434	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	4	4	PTMA	6024	chr2:232576657:+	NCL	15449	chr2:232326433:-	INCL_NON_REF_SPLICE	YES	4499	2468	0	0	0.0345	0.0345	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.069	FALSE	0	0	0	5	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	32	41	0.16	0.13	0.0345	0.0173	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.16	0.0518	TRUE	267	562	48	632	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	63	1316	0.07	0	0.0345	0.0086	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0431	FALSE	0	0	0	434	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	YES	63	1204	0.07	0	0.0345	0.0086	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0431	FALSE	0	0	0	434	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ILF3--CLK4	4	0	ILF3	13013	chr19:10794646:+	CLK4	31136	chr5:178045779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,CLK4->CDC_like_kinase_4,chr5:178029665-178057616:-	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0259	0.0173	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0432	FALSE	515	4851	409	746	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0259	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0259	FALSE	499	1288	110	792	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0259	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0259	TRUE	22	156	2	142	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX13--RALA	2	0	SNX13	1218	chr7:17979907:-	RALA	46938	chr7:39726230:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	SNX13->chr7:17830385-17980124:-,sorting_nexin_13,RALA->Oncogene{Bushman},chr7:39663082-39747723:+,v-ral_simian_leukemia_viral_oncogene_homolog_A_(ras_related)	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FADD--NARS2	1	2	FADD	1583	chr11:70049851:+	NARS2	16490	chr11:78189729:-	ONLY_REF_SPLICE	YES	34	22	0.08	0.12	0.0086	0.0173	FADD->Fas_associated_via_death_domain,chr11:70049269-70053496:+,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.12	0.0259	TRUE	0	0	0	1	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0.0173	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0259	FALSE	407	2205	196	549	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	1	1	0.75	0.0086	0.0173	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0259	FALSE	467	2173	244	435	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--PHF14	1	1	DANCR	1530	chr4:53579126:+	PHF14	31809	chr7:11150977:+	ONLY_REF_SPLICE	NO	810	60	0	0.03	0.0086	0.0086	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0172	FALSE	0	5	0	5	1	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INVS--ERP44	1	1	INVS	5175	chr9:102888831:+	ERP44	31082	chr9:102822454:-	ONLY_REF_SPLICE	YES	10	124	0.17	0.02	0.0086	0.0086	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[216],INVS->chr9:102861538-103063282:+,inversin,ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.17	0.0172	TRUE	0	0	0	3	0	FALSE	ACH-000687
CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX29--USP10	1	1	SNX29	5452	chr16:12121301:+	USP10	51433	chr16:84792322:+	ONLY_REF_SPLICE	NO	10	109	0.17	0.02	0.0086	0.0086	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10	CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.17	0.0172	TRUE	0	0	0	1	0	FALSE	ACH-000687
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	111	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0323	0.2232	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2555	TRUE	508	994	45	981	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	66	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6138	0.0465	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6603	TRUE	477	1352	189	275	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	58	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	100	9	0.38	0.87	0.5394	0.0186	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.87	0.558	TRUE	519	3926	326	965	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	50	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.465	0.0558	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5208	FALSE	462	80	0	856	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	34	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3162	0.0558	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.372	FALSE	499	1288	110	792	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIP1--POM121C	21	13	HIP1	1162	chr7:75368119:-	POM121C	48690	chr7:75055735:-	ONLY_REF_SPLICE	YES	20	99	0.63	0.26	0.1953	0.1209	NEIGHBORS[47073],HIP1->Oncogene{Bushman},chr7:75162621-75368280:-,huntingtin_interacting_protein_1,POM121C->POM121_transmembrane_nucleoporin_C,chr7:75046066-75115548:-	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.63	0.3162	FALSE	0	0	0	1	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	14	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1302	0.1395	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.2697	FALSE	499	1288	110	792	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	14	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1302	0.0558	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.186	FALSE	499	1288	110	792	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	11	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1023	0.0558	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1581	FALSE	462	80	0	856	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYC--IGH@	11	2	MYC	2190	chr8:128748869:+	IGH@	104367	chr14:106322322:-	INCL_NON_REF_SPLICE	YES	0	4239	1	0	0.1023	0.0186	chimerdb_pubmed{Burkitt's lymphoma,Burkitt's lymphomas(BL),sporadic Burkittlymphoma},MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog,IGH@->Oncogene{Bushman}	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1209	TRUE	0	0	0	1	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	25	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0465	0.2325	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.279	FALSE	499	1288	110	792	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	11	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1023	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1023	FALSE	13	9	0	364	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXP1--SMC4	8	5	FOXP1	19737	chr3:71247353:-	SMC4	54620	chr3:160129708:+	ONLY_REF_SPLICE	YES	46	216	0.22	0.06	0.0744	0.0465	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,SMC4->chr3:160117062-160152750:+,structural_maintenance_of_chromosomes_4	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.22	0.1209	TRUE	0	0	0	1	0	TRUE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--SNX5	9	0	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0837	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0837	TRUE	0	5	0	11	0	TRUE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TC--MT-TY	5	15	MT-TC	1061	chrM:5766:-	MT-TY	4075	chrM:5883:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0.1395	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.186	FALSE	51	280	19	36	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	16	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0.1488	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.186	FALSE	499	1288	110	792	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	6	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	TRUE	0	5	1	24	1	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ITGB3BP	6	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0558	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	TRUE	0	6	0	9	2	TRUE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	5	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	47	0	0.13	1	0.0465	0.0186	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.0651	FALSE	272	151	14	158	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0.0837	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1116	FALSE	462	80	0	856	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	6	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0.0558	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0837	FALSE	499	1288	110	792	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	4	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0.0093	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0465	TRUE	274	363	69	150	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--SRSF1	3	3	IGLL5	1480	chr22:23230439:+	SRSF1	9641	chr17:56082402:-	ONLY_REF_SPLICE	YES	732	369	0.01	0.02	0.0279	0.0279	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0558	FALSE	0	1	0	1	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	2	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0.0186	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0465	FALSE	499	1288	110	792	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-319G9.5--WWOX	3	2	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	17	1	0.23	0.0279	0.0186	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.0465	FALSE	154	425	28	76	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	2	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0.0558	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0744	TRUE	160	277	29	98	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIP1--POM121C	1	9	HIP1	1162	chr7:75368119:-	POM121C	49434	chr7:75054991:-	ONLY_REF_SPLICE	YES	20	86	0.33	0.1	0.0093	0.0837	NEIGHBORS[47073],HIP1->Oncogene{Bushman},chr7:75162621-75368280:-,huntingtin_interacting_protein_1,POM121C->POM121_transmembrane_nucleoporin_C,chr7:75046066-75115548:-	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.33	0.093	FALSE	0	0	0	1	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0279	0.0093	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0372	FALSE	515	4851	409	746	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	3	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	FALSE	13	9	0	364	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1014	chrM:14660:-	MT-TE	4552	chrM:14716:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	FALSE	499	1288	110	792	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TC--MT-TY	3	0	MT-TC	1011	chrM:5816:-	MT-TY	4067	chrM:5891:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	FALSE	51	280	19	36	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TC--MT-TY	3	0	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	FALSE	51	280	19	36	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--TNK2	3	0	PPP1R12C	8950	chr19:55610152:-	TNK2	27085	chr3:195615477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6]},GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Whole_Blood=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,TNK2->chr3:195590235-195638816:-,tyrosine_kinase_non_receptor_2	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	TRUE	2	0	0	2	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATAD2B--ODF2L	2	0	ATAD2B	40421	chr2:23977049:-	ODF2L	49242	chr1:86852769:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	ATAD2B->ATPase_family,_AAA_domain_containing_2B,chr2:23971534-24149984:-,ODF2L->chr1:86814344-86862023:-,outer_dense_fiber_of_sperm_tails_2_like	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C10orf118--STAMBPL1	2	0	C10orf118	1206	chr10:115933774:-	STAMBPL1	31755	chr10:90661413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	C10orf118->chr10:115880621-115933979:-,STAMBPL1->STAM_binding_protein_like_1,chr10:90639491-90734910:+	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--SEPT2	2	0	RCC1	2920	chr1:28835417:+	SEPT2	34176	chr2:242287549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	2	0	TRUE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFX3--RP11-509J21.1	2	0	RFX3	1258	chr9:3525747:-	RP11-509J21.1	35680	chr9:3546778:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	LOCAL_INVERSION:-:+:[719],RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,RP11-509J21.1->chr9:3526723-3671646:+	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	2	0	TRUE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	465	1949	224	605	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPOP--CYTH1	2	0	SPOP	1302	chr17:47755295:-	CYTH1	29797	chr17:76705814:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,CYTH1->chr17:76670130-76778379:-,cytohesin_1	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--CUX1	1	2	IGLL5	1480	chr22:23230439:+	CUX1	53503	chr7:101916637:+	ONLY_REF_SPLICE	YES	732	107	0	0.03	0.0093	0.0186	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0279	FALSE	0	0	0	1	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0093	0.0186	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	TRUE	13	17	1	13	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--SRSF1	1	1	CHD2	6529	chr15:93444529:+	SRSF1	62155	chr17:56082402:-	ONLY_REF_SPLICE	NO	183	369	0.01	0.01	0.0093	0.0093	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0186	FALSE	1	2	0	9	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MYC	1	1	IGH@	94353	chr14:106330425:-	MYC	133992	chr8:128750494:+	ONLY_REF_SPLICE	YES	4703	0	0	1	0.0093	0.0093	chimerdb_pubmed{Burkitt lymphoma/leukaemia, highly aggressive but good prognosis with intensive chemotherapy treatment},IGH@->Oncogene{Bushman},MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--SRSF1	1	1	PROSC	2996	chr8:37623873:+	SRSF1	14701	chr17:56082402:-	ONLY_REF_SPLICE	YES	113	369	0.02	0.01	0.0093	0.0093	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Breast=[count:2=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=3,Brain_-_Hippocampus=1,Thyroid=1,Adipose_-_Subcutaneous=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0186	FALSE	6	2	0	9	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0093	0.0093	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0186	FALSE	407	2205	196	549	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--COPB1	1	1	RPS3	2292	chr11:75111821:+	COPB1	14025	chr11:14520531:-	ONLY_REF_SPLICE	YES	2889	134	0	0.01	0.0093	0.0093	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,COPB1->chr11:14464986-14521573:-,coatomer_protein_complex_subunit_beta_1	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000440
CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	NO	47	2	0.04	0.5	0.0093	0.0093	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.5	0.0186	FALSE	28	14	1	23	0	FALSE	ACH-000440
HCC515_LUNG	TIMM23B--LINC00843	107	43	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.3171	0.5293	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC515_LUNG	0.99	1	1.8464	TRUE	508	994	45	981	0	FALSE	ACH-000872
HCC515_LUNG	TIMM23--RP11-464F9.1	75	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	367	13	0.18	0.86	0.9232	0.0862	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC515_LUNG	0.18	0.86	1.0094	TRUE	519	3926	326	965	0	FALSE	ACH-000872
HCC515_LUNG	KANSL1--ARL17B	60	41	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	35	45	0.74	0.69	0.7386	0.5047	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC515_LUNG	0.69	0.74	1.2433	TRUE	181	1564	124	196	0	FALSE	ACH-000872
HCC515_LUNG	ARHGAP23--PMPCA	68	8	ARHGAP23	1131	chr17:36584792:+	PMPCA	32064	chr9:139306449:+	ONLY_REF_SPLICE	YES	0	32	1	0.7	0.837	0.0985	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,PMPCA->chr9:139305110-139318213:+,peptidase,_mitochondrial_processing_alpha_subunit	HCC515_LUNG	0.7	1	0.9355	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	ELMSAN1--NVL	48	31	ELMSAN1	15172	chr14:74191975:-	NVL	49703	chr1:224455835:-	ONLY_REF_SPLICE	YES	31	87	0.72	0.48	0.5908	0.3816	ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-,NVL->chr1:224415036-224518089:-,nuclear_VCP-like	HCC515_LUNG	0.48	0.72	0.9724	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	EHD1--AP000479.1	30	24	EHD1	6099	chr11:64641893:-	AP000479.1	20005	chr11:56643073:+	ONLY_REF_SPLICE	YES	70	0	0.44	1	0.3693	0.2954	EHD1->EH_domain_containing_1,chr11:64619114-64655768:-,AP000479.1->chr11:56615954-56645554:+	HCC515_LUNG	0.44	1	0.6647	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	PLXDC1--TAF13	36	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4431	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCC515_LUNG	1	1	0.4431	TRUE	7	10	0	216	0	FALSE	ACH-000872
HCC515_LUNG	MT-ND5--MT-ATP8	30	23	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	7	0	0.88	1	0.3693	0.2831	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC515_LUNG	0.88	1	0.6524	FALSE	43	37	8	105	0	FALSE	ACH-000872
HCC515_LUNG	TADA2A--RP11-697E22.2	25	3	TADA2A	10206	chr17:35802753:+	RP11-697E22.2	29826	chr17:36044218:+	ONLY_REF_SPLICE	YES	59	0	0.32	1	0.3077	0.0369	TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,RP11-697E22.2->chr17:36002976-36044255:+	HCC515_LUNG	0.32	1	0.3446	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	RP11-96H19.1--RP11-446N19.1	19	26	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	0	0.92	1	0.2339	0.32	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC515_LUNG	0.92	1	0.5539	FALSE	515	4851	409	746	0	FALSE	ACH-000872
HCC515_LUNG	ALG6--ITGB3BP	20	20	ALG6	3701	chr1:63862268:+	ITGB3BP	30681	chr1:63924044:-	ONLY_REF_SPLICE	YES	75	217	0.35	0.16	0.2462	0.2462	LOCAL_INVERSION:+:-:[2208],ALG6->ALG6,_alpha-1,3-glucosyltransferase,chr1:63833261-63904233:+,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	HCC515_LUNG	0.16	0.35	0.4924	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	RP11-59N23.1--CMAS	20	11	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	19	199	0.62	0.13	0.2462	0.1354	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	HCC515_LUNG	0.13	0.62	0.3816	TRUE	21	102	17	28	0	FALSE	ACH-000872
HCC515_LUNG	ASCC1--MICU1	18	18	ASCC1	17277	chr10:73887840:-	MICU1	44374	chr10:74135630:-	ONLY_REF_SPLICE	YES	125	147	0.22	0.2	0.2216	0.2216	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	HCC515_LUNG	0.2	0.22	0.4432	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	TADA2A--RP11-697E22.2	15	15	TADA2A	10206	chr17:35802753:+	RP11-697E22.2	28359	chr17:36035828:+	ONLY_REF_SPLICE	YES	59	0	0.34	1	0.1846	0.1846	TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,RP11-697E22.2->chr17:36002976-36044255:+	HCC515_LUNG	0.34	1	0.3692	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	ASCC1--MICU1	13	20	ASCC1	17277	chr10:73887840:-	MICU1	43254	chr10:74139341:-	ONLY_REF_SPLICE	YES	125	160	0.21	0.17	0.16	0.2462	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	HCC515_LUNG	0.17	0.21	0.4062	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	CEP128--GTF2A1	13	8	CEP128	13431	chr14:81362062:-	GTF2A1	50047	chr14:81663828:-	ONLY_REF_SPLICE	YES	17	78	0.55	0.21	0.16	0.0985	{Klijn_CCL:Lymphoid=1,Lung=1},CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,GTF2A1->Oncogene{Bushman},chr14:81641796-81687721:-,general_transcription_factor_IIA_subunit_1	HCC515_LUNG	0.21	0.55	0.2585	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	ASCC1--MICU1	9	15	ASCC1	16191	chr10:73892815:-	MICU1	44374	chr10:74135630:-	ONLY_REF_SPLICE	YES	192	147	0.11	0.14	0.1108	0.1846	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	HCC515_LUNG	0.11	0.14	0.2954	TRUE	0	1	0	1	0	TRUE	ACH-000872
HCC515_LUNG	MT-ND5--MT-ATP8	10	11	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2982	18	0.01	0.54	0.1231	0.1354	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC515_LUNG	0.01	0.54	0.2585	FALSE	43	37	8	105	0	FALSE	ACH-000872
HCC515_LUNG	RP11-123O10.4--GRIP1	12	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1477	0.0369	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC515_LUNG	1	1	0.1846	FALSE	416	2512	207	587	0	FALSE	ACH-000872
HCC515_LUNG	C15orf57--CBX3	8	15	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	156	59	0.13	0.28	0.0985	0.1846	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC515_LUNG	0.13	0.28	0.2831	TRUE	267	562	48	632	0	FALSE	ACH-000872
HCC515_LUNG	MT-ND5--MT-ATP8	5	27	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0615	0.3324	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC515_LUNG	1	1	0.3939	FALSE	43	37	8	105	0	FALSE	ACH-000872
HCC515_LUNG	MT-ATP6--MT-CO1	11	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	13148	22120	0	0	0.1354	0.0123	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC515_LUNG	0	0	0.1477	FALSE	183	104	9	328	0	FALSE	ACH-000872
HCC515_LUNG	MT-ND5--MT-ATP8	9	9	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5046	112	0	0.14	0.1108	0.1108	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC515_LUNG	0	0.14	0.2216	FALSE	43	37	8	105	0	FALSE	ACH-000872
HCC515_LUNG	RP11-96H19.1--RP11-446N19.1	4	27	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.89	1	0.0492	0.3324	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC515_LUNG	0.89	1	0.3816	FALSE	407	2205	196	549	0	FALSE	ACH-000872
HCC515_LUNG	RP11-96H19.1--RP11-446N19.1	3	30	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0369	0.3693	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC515_LUNG	1	1	0.4062	FALSE	467	2173	244	435	0	FALSE	ACH-000872
HCC515_LUNG	TADA2A--RP11-697E22.2	6	12	TADA2A	9117	chr17:35800763:+	RP11-697E22.2	28359	chr17:36035828:+	ONLY_REF_SPLICE	YES	192	0	0.09	1	0.0739	0.1477	TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,RP11-697E22.2->chr17:36002976-36044255:+	HCC515_LUNG	0.09	1	0.2216	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	RP11-96H19.1--RP11-446N19.1	2	27	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	4	0	0.88	1	0.0246	0.3324	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC515_LUNG	0.88	1	0.357	FALSE	275	511	55	178	0	FALSE	ACH-000872
HCC515_LUNG	EHD1--AP000479.1	2	25	EHD1	6099	chr11:64641893:-	AP000479.1	19132	chr11:56642200:+	ONLY_REF_SPLICE	YES	70	0	0.28	1	0.0246	0.3077	EHD1->EH_domain_containing_1,chr11:64619114-64655768:-,AP000479.1->chr11:56615954-56645554:+	HCC515_LUNG	0.28	1	0.3323	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	MT-ATP6--MT-CO1	8	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0985	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC515_LUNG	1	1	0.0985	FALSE	183	104	9	328	0	FALSE	ACH-000872
HCC515_LUNG	C15orf57--CBX3	4	13	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	153	61	0.1	0.22	0.0492	0.16	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC515_LUNG	0.1	0.22	0.2092	TRUE	267	562	48	632	0	FALSE	ACH-000872
HCC515_LUNG	TADA2A--RP11-697E22.2	6	5	TADA2A	10206	chr17:35802753:+	RP11-697E22.2	29782	chr17:36044174:+	INCL_NON_REF_SPLICE	YES	59	0	0.16	1	0.0739	0.0615	TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,RP11-697E22.2->chr17:36002976-36044255:+	HCC515_LUNG	0.16	1	0.1354	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	LINC00473--PDE10A	5	7	LINC00473	1520	chr6:166401017:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	226	0	0.05	1	0.0615	0.0862	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	HCC515_LUNG	0.05	1	0.1477	FALSE	6	13	0	15	0	FALSE	ACH-000872
HCC515_LUNG	IGFBP4--NPM1	6	0	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0739	0	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HCC515_LUNG	1	1	0.0739	TRUE	0	0	0	38	0	FALSE	ACH-000872
HCC515_LUNG	MT-CO1--MT-ND2	4	8	MT-CO1	1603	chrM:6506:+	MT-ND2	5988	chrM:4915:+	INCL_NON_REF_SPLICE	YES	18425	21429	0	0	0.0492	0.0985	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC515_LUNG	0	0	0.1477	FALSE	55	19	1	13	0	FALSE	ACH-000872
HCC515_LUNG	MT-ND5--MT-ATP8	3	11	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	3498	0	0	1	0.0369	0.1354	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC515_LUNG	0	1	0.1723	FALSE	43	37	8	105	0	FALSE	ACH-000872
HCC515_LUNG	MT-ATP6--MT-CO1	3	8	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4098	22463	0	0	0.0369	0.0985	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC515_LUNG	0	0	0.1354	FALSE	183	104	9	328	0	FALSE	ACH-000872
HCC515_LUNG	TADA2A--RP11-697E22.2	4	4	TADA2A	9117	chr17:35800763:+	RP11-697E22.2	29782	chr17:36044174:+	INCL_NON_REF_SPLICE	YES	192	0	0.04	1	0.0492	0.0492	TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,RP11-697E22.2->chr17:36002976-36044255:+	HCC515_LUNG	0.04	1	0.0984	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	MT-CO1--MT-ND2	3	7	MT-CO1	1598	chrM:6501:+	MT-ND2	6015	chrM:4942:+	INCL_NON_REF_SPLICE	YES	18255	21555	0	0	0.0369	0.0862	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC515_LUNG	0	0	0.1231	FALSE	55	19	1	13	0	FALSE	ACH-000872
HCC515_LUNG	IGFBP4--NPM1	4	1	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	2194	2	0	0.71	0.0492	0.0123	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HCC515_LUNG	0	0.71	0.0615	FALSE	0	0	0	38	0	FALSE	ACH-000872
HCC515_LUNG	FTH1--ACTG1	4	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0492	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HCC515_LUNG	1	1	0.0492	TRUE	0	0	0	64	0	FALSE	ACH-000872
HCC515_LUNG	KRT7--RPL12	4	0	KRT7	5529	chr12:52632508:+	RPL12	17410	chr9:130213654:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0492	0	KRT7->chr12:52626304-52645970:+,keratin_7,RPL12->chr9:130209953-130213684:-,ribosomal_protein_L12	HCC515_LUNG	1	1	0.0492	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	MT-ATP6--MT-CO1	3	4	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	15047	19400	0	0	0.0369	0.0492	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC515_LUNG	0	0	0.0861	FALSE	183	104	9	328	0	FALSE	ACH-000872
HCC515_LUNG	MT-ATP6--MT-CO1	3	4	MT-ATP6	1136	chrM:8662:+	MT-CO1	5337	chrM:6559:+	INCL_NON_REF_SPLICE	YES	13813	22295	0	0	0.0369	0.0492	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC515_LUNG	0	0	0.0861	FALSE	183	104	9	328	0	FALSE	ACH-000872
HCC515_LUNG	MT-ATP6--MT-CO1	3	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	15884	21686	0	0	0.0369	0.0492	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC515_LUNG	0	0	0.0861	FALSE	183	104	9	328	0	FALSE	ACH-000872
HCC515_LUNG	MT-CO1--MT-ND2	4	0	MT-CO1	1327	chrM:6230:+	MT-ND2	6422	chrM:5349:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0492	0	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC515_LUNG	1	1	0.0492	FALSE	55	19	1	13	0	FALSE	ACH-000872
HCC515_LUNG	RP11-59N23.3--RP11-729I10.2	3	3	RP11-59N23.3	2631	chr12:21913019:+	RP11-729I10.2	7910	chr12:22022516:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0.0369	NEIGHBORS[67178],RP11-59N23.3->chr12:21815247-21912966:+,RP11-729I10.2->chr12:21980144-22040891:+	HCC515_LUNG	1	1	0.0738	FALSE	0	0	0	3	0	FALSE	ACH-000872
HCC515_LUNG	KANSL1--ARL17B	1	10	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	35	38	0.24	0.22	0.0123	0.1231	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC515_LUNG	0.22	0.24	0.1354	TRUE	20	16	0	28	0	FALSE	ACH-000872
HCC515_LUNG	TADA2A--RP11-697E22.2	3	2	TADA2A	9117	chr17:35800763:+	RP11-697E22.2	29826	chr17:36044218:+	ONLY_REF_SPLICE	YES	192	0	0.03	1	0.0369	0.0246	TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,RP11-697E22.2->chr17:36002976-36044255:+	HCC515_LUNG	0.03	1	0.0615	TRUE	0	0	0	1	0	FALSE	ACH-000872
HCC515_LUNG	AL589743.1--CTD-2311B13.1	3	1	AL589743.1	9393	chr14:19680685:+	CTD-2311B13.1	29499	chr14:19517501:+	ONLY_REF_SPLICE	YES	83	0	0.05	1	0.0369	0.0123	AL589743.1->chr14:19650018-19718563:+,CTD-2311B13.1->chr14:19505871-19519837:+	HCC515_LUNG	0.05	1	0.0492	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	ARHGAP23--PMPCA	3	1	ARHGAP23	1131	chr17:36584792:+	PMPCA	35279	chr9:139310743:+	ONLY_REF_SPLICE	YES	0	1569	1	0	0.0369	0.0123	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,PMPCA->chr9:139305110-139318213:+,peptidase,_mitochondrial_processing_alpha_subunit	HCC515_LUNG	0	1	0.0492	FALSE	0	0	0	1	0	FALSE	ACH-000872
HCC515_LUNG	PXN--MSI1	3	1	PXN	10891	chr12:120659426:-	MSI1	25359	chr12:120802558:-	ONLY_REF_SPLICE	YES	267	3	0.01	0.57	0.0369	0.0123	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[75559],PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,MSI1->chr12:120779133-120806983:-,musashi_RNA_binding_protein_1	HCC515_LUNG	0.01	0.57	0.0492	FALSE	0	0	0	1	0	FALSE	ACH-000872
HCC515_LUNG	ASCC1--MICU1	1	8	ASCC1	17277	chr10:73887840:-	MICU1	45464	chr10:74128113:-	ONLY_REF_SPLICE	NO	125	141	0.07	0.06	0.0123	0.0985	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	HCC515_LUNG	0.06	0.07	0.1108	TRUE	0	0	0	1	0	FALSE	ACH-000872
HCC515_LUNG	RP11-59N23.3--RP11-729I10.2	2	2	RP11-59N23.3	1459	chr12:21815705:+	RP11-729I10.2	6794	chr12:21984013:+	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.0246	0.0246	NEIGHBORS[67178],RP11-59N23.3->chr12:21815247-21912966:+,RP11-729I10.2->chr12:21980144-22040891:+	HCC515_LUNG	0.2	1	0.0492	FALSE	0	2	0	3	0	FALSE	ACH-000872
HCC515_LUNG	AL589743.1--CTD-2311B13.1	2	1	AL589743.1	1109	chr14:19650126:+	CTD-2311B13.1	29499	chr14:19517501:+	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0246	0.0123	AL589743.1->chr14:19650018-19718563:+,CTD-2311B13.1->chr14:19505871-19519837:+	HCC515_LUNG	0.25	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	AC073283.4--EPCAM	2	0	AC073283.4	1174	chr2:47572040:-	EPCAM	20907	chr2:47606092:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	LOCAL_INVERSION:-:+:[84],AC073283.4->chr2:47419544-47572213:-,EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule	HCC515_LUNG	1	1	0.0246	TRUE	0	5	0	5	2	TRUE	ACH-000872
HCC515_LUNG	AP2A2--TMCO3	2	0	AP2A2	2195	chr11:926088:+	TMCO3	38080	chr13:114149817:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	AP2A2->adaptor_related_protein_complex_2_alpha_2_subunit,chr11:924894-1012239:+,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	HCC515_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	CTC-228N24.2--CTC-228N24.3	2	0	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HCC515_LUNG	1	1	0.0246	TRUE	0	1	0	12	1	TRUE	ACH-000872
HCC515_LUNG	EXOSC9--CDC45	2	0	EXOSC9	8793	chr4:122734535:+	CDC45	26170	chr22:19494909:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	EXOSC9->chr4:122722472-122738176:+,exosome_component_9,CDC45->cell_division_cycle_45,chr22:19466982-19508135:+	HCC515_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	H3F3A--HSP90AB1	2	0	H3F3A	1961	chr1:226250512:+	HSP90AB1	12273	chr6:44216367:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	H3F3A->ArcherDX_panel,FoundationOne_panel,H3_histone,_family_3A,Oncogene{Bushman},chr1:226249552-226259702:+,HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1	HCC515_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	IFNLR1--B3GNTL1	2	0	IFNLR1	4078	chr1:24495907:-	B3GNTL1	16210	chr17:81006661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	IFNLR1->chr1:24480647-24514449:-,interferon_lambda_receptor_1,B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-	HCC515_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	MAN2B1--MBD1	2	0	MAN2B1	12841	chr19:12760727:-	MBD1	19542	chr18:47807846:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	MAN2B1->chr19:12757325-12777556:-,mannosidase_alpha_class_2B_member_1,MBD1->chr18:47793252-47808144:-,methyl-CpG_binding_domain_protein_1	HCC515_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	MPP5--FUT8	2	0	MPP5	1425	chr14:67708250:+	FUT8	30463	chr14:65922339:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5,FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8	HCC515_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	RP11-59N23.3--RP11-729I10.2	1	4	RP11-59N23.3	1459	chr12:21815705:+	RP11-729I10.2	5579	chr12:21980144:+	ONLY_REF_SPLICE	YES	16	0	0.24	1	0.0123	0.0492	NEIGHBORS[67178],RP11-59N23.3->chr12:21815247-21912966:+,RP11-729I10.2->chr12:21980144-22040891:+	HCC515_LUNG	0.24	1	0.0615	FALSE	0	2	0	4	0	FALSE	ACH-000872
HCC515_LUNG	SLC29A2--RBM4	2	0	SLC29A2	6568	chr11:66133407:-	RBM4	23509	chr11:66433327:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	SLC29A2->chr11:66129992-66139685:-,solute_carrier_family_29_member_2,RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+	HCC515_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	SNHG16--RP3-508I15.14	2	0	SNHG16	4633	chr17:74557480:+	RP3-508I15.14	12382	chr22:39144712:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,RP3-508I15.14->chr22:39135008-39145046:+	HCC515_LUNG	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000872
HCC515_LUNG	TAF4--PSMA7	2	0	TAF4	17661	chr20:60572606:-	PSMA7	30022	chr20:60716000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	GTEx_FI:{Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Liver=1,Muscle_-_Skeletal=1},{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[70925],TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	HCC515_LUNG	1	1	0.0246	TRUE	1	3	0	4	0	TRUE	ACH-000872
HCC515_LUNG	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0.0369	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC515_LUNG	1	1	0.0492	FALSE	93	270	15	244	0	FALSE	ACH-000872
HCC515_LUNG	C19orf25--DAZAP1	1	1	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	24	124	0.08	0.02	0.0123	0.0123	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	HCC515_LUNG	0.02	0.08	0.0246	TRUE	6	7	1	24	0	FALSE	ACH-000872
HCC515_LUNG	CDK4--SCAMP2	1	1	CDK4	3104	chr12:58145283:-	SCAMP2	17734	chr15:75137934:-	ONLY_REF_SPLICE	YES	705	233	0	0.01	0.0123	0.0123	CDK4->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:58141510-58149796:-,cyclin-dependent_kinase_4,SCAMP2->chr15:75136071-75165706:-,secretory_carrier_membrane_protein_2	HCC515_LUNG	0	0.01	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000872
HCC515_LUNG	CTD-2600O9.1--NFYB	1	1	CTD-2600O9.1	1447	chr16:57832544:+	NFYB	12595	chr12:104529310:-	ONLY_REF_SPLICE	NO	47	90	0.04	0.02	0.0123	0.0123	CTD-2600O9.1->chr16:57832098-57850850:+,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	HCC515_LUNG	0.02	0.04	0.0246	TRUE	0	0	0	1	0	FALSE	ACH-000872
HCC515_LUNG	CYP24A1--RP11-218M22.1	1	1	CYP24A1	10936	chr20:52773708:-	RP11-218M22.1	21386	chr12:753125:+	ONLY_REF_SPLICE	NO	1713	28	0	0.07	0.0123	0.0123	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,RP11-218M22.1->chr12:740057-772872:+	HCC515_LUNG	0	0.07	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000872
HCC515_LUNG	TMEM18--SH3YL1	1	1	TMEM18	1151	chr2:677289:-	SH3YL1	20991	chr2:253115:-	ONLY_REF_SPLICE	YES	180	17	0.01	0.11	0.0123	0.0123	TMEM18->chr2:667335-677439:-,transmembrane_protein_18,SH3YL1->SH3_and_SYLF_domain_containing_1,chr2:217730-266398:-	HCC515_LUNG	0.01	0.11	0.0246	FALSE	1	1	0	2	0	FALSE	ACH-000872
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	127	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6888	0.4122	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.101	TRUE	508	994	45	981	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	115	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5293	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.5293	FALSE	369	2501	205	193	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	80	11	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0638	0.1463	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2101	FALSE	462	80	0	856	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	77	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.0239	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0239	TRUE	519	3926	326	965	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	65	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8644	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8644	TRUE	0	0	0	518	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNRC18--ZNF629	53	12	TNRC18	10018	chr7:5427303:-	ZNF629	42801	chr16:30795836:-	ONLY_REF_SPLICE	YES	16	0	0.8	1	0.7048	0.1596	TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,ZNF629->chr16:30789778-30798523:-,zinc_finger_protein_629	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.8644	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	26	76	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3457	1.0106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.3563	FALSE	369	2501	205	193	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RGS14--NSD1	37	14	RGS14	7190	chr5:176798397:+	NSD1	39690	chr5:176707566:+	ONLY_REF_SPLICE	YES	126	27	0.29	0.65	0.492	0.1862	LOCAL_REARRANGEMENT:+:[57622],RGS14->chr5:176784838-176799602:+,regulator_of_G-protein_signaling_14,NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.65	0.6782	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELMO1--SLCO3A1	33	12	ELMO1	7375	chr7:37382217:-	SLCO3A1	50719	chr15:92638111:+	ONLY_REF_SPLICE	YES	195	112	0.19	0.29	0.4388	0.1596	ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1,SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.29	0.5984	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	32	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4255	0.0798	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5053	FALSE	499	1288	110	792	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNRC18--MYLPF	26	5	TNRC18	9220	chr7:5428101:-	MYLPF	43276	chr16:30384218:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.3457	0.0665	TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.4122	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EBF1--AKAP7	20	8	EBF1	6894	chr5:158500404:-	AKAP7	41505	chr6:131603539:+	ONLY_REF_SPLICE	YES	5	10	0.85	0.74	0.266	0.1064	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,AKAP7->A-kinase_anchoring_protein_7,chr6:131456806-131604675:+	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	0.85	0.3724	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	7	51	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0931	0.6782	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7713	FALSE	369	2501	205	193	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	9	41	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1197	0.5452	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6649	FALSE	369	2501	205	193	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	13	21	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1729	0.2793	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4522	FALSE	369	2501	205	193	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATG7--THUMPD3	16	4	ATG7	7783	chr3:11340890:+	THUMPD3	45181	chr3:9416200:+	ONLY_REF_SPLICE	YES	25	37	0.44	0.35	0.2128	0.0532	ATG7->autophagy_related_7,chr3:11313995-11599139:+,THUMPD3->THUMP_domain_containing_3,chr3:9404526-9428475:+	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.44	0.266	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1729	0.1596	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3325	FALSE	499	1288	110	792	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	16	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2128	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2128	FALSE	369	2501	205	193	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	42	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	3	0.98	0.94	0.0532	0.5585	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	0.98	0.6117	FALSE	189	492	56	216	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCEH1--SPATA16	13	4	NCEH1	1372	chr3:172428637:-	SPATA16	15605	chr3:172766884:-	ONLY_REF_SPLICE	YES	14	0	0.55	1	0.1729	0.0532	NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,SPATA16->chr3:172607148-172859058:-,spermatogenesis_associated_16	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.2261	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	20	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1064	0.266	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3724	FALSE	499	1288	110	792	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1729	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1729	TRUE	0	0	0	434	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1432--AP000695.4	12	3	KIAA1432	1429	chr9:5629453:+	AP000695.4	36416	chr21:37904269:+	ONLY_REF_SPLICE	YES	15	0	0.5	1	0.1596	0.0399	KIAA1432->chr9:5629025-5776557:+,AP000695.4->chr21:37818029-37904706:+	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.1995	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	12	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2681	0	0.01	1	0.1596	0.0266	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1862	FALSE	13	9	0	364	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	14	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1197	0.1862	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3059	FALSE	462	80	0	856	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	25	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0798	0.3324	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4122	FALSE	369	2501	205	193	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	8	13	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1064	0.1729	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2793	FALSE	462	80	0	856	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	25	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0532	0.3324	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3856	FALSE	499	1288	110	792	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	8	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	33	6	0.33	0.73	0.1064	0.1064	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.73	0.2128	TRUE	267	562	48	632	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	8	7	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	24	0	0.38	1	0.1064	0.0931	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.1995	FALSE	114	26	4	85	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1064	0.0931	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1995	FALSE	499	1288	110	792	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2706	0	0	1	0.1197	0.0133	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.133	FALSE	13	9	0	364	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	9	1	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	10699	9785	0	0	0.1197	0.0133	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.133	FALSE	63	17	1	58	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	9	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1197	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1197	FALSE	369	2501	205	193	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	7	7	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	25	0	0.36	1	0.0931	0.0931	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.1862	FALSE	114	26	4	85	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EBF1--AKAP7	6	9	EBF1	6894	chr5:158500404:-	AKAP7	40636	chr6:131602670:+	ONLY_REF_SPLICE	YES	5	8	0.75	0.65	0.0798	0.1197	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,AKAP7->A-kinase_anchoring_protein_7,chr6:131456806-131604675:+	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.75	0.1995	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	8	1	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	10325	9321	0	0	0.1064	0.0133	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1197	FALSE	63	17	1	58	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	8	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1064	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1064	FALSE	189	492	56	216	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	8	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1064	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1064	TRUE	0	0	0	518	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	14	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0532	0.1862	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2394	FALSE	499	1288	110	792	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	6	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	32	7	0.26	0.61	0.0798	0.0665	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.61	0.1463	TRUE	267	562	48	632	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	7	1	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	9425	0	0	1	0.0931	0.0133	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1064	FALSE	63	17	1	58	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	7	1	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	68	0	0.11	1	0.0931	0.0133	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.1064	FALSE	351	233	23	137	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	17	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0.2261	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.266	FALSE	499	1288	110	792	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0931	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0931	FALSE	189	492	56	216	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	11	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0532	0.1463	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1995	FALSE	499	1288	110	792	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	10	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0532	0.133	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1862	FALSE	189	492	56	216	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	10	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0532	0.133	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1862	FALSE	189	492	56	216	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0798	0.0266	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1064	FALSE	462	80	0	856	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RGS14--NSD1	3	14	RGS14	7201	chr5:176798408:+	NSD1	39690	chr5:176707566:+	INCL_NON_REF_SPLICE	YES	141	27	0.11	0.39	0.0399	0.1862	LOCAL_REARRANGEMENT:+:[57622],RGS14->chr5:176784838-176799602:+,regulator_of_G-protein_signaling_14,NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.39	0.2261	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0798	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0798	FALSE	369	2501	205	193	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0798	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0798	FALSE	369	2501	205	193	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	6	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0798	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0798	TRUE	0	0	0	434	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	4	7	MT-ND1	1272	chrM:3578:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	YES	26	0	0.3	1	0.0532	0.0931	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.1463	FALSE	114	26	4	85	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	10	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0.133	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1729	FALSE	462	80	0	856	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	5	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0665	0.0266	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0931	TRUE	477	1352	189	275	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	10305	9375	0	0	0.0665	0.0133	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0798	FALSE	63	17	1	58	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	8221	9924	0	0	0.0665	0.0133	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0798	FALSE	63	17	1	58	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	9	MT-ND1	1482	chrM:3788:+	MT-RNR2	4976	chrM:1690:+	INCL_NON_REF_SPLICE	YES	133	0	0.08	1	0.0399	0.1197	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.1596	FALSE	114	26	4	85	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ND4L	4	4	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1108	0	0.01	1	0.0532	0.0532	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1064	FALSE	1	1	0	107	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	5	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0665	TRUE	0	0	0	81	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0665	FALSE	183	104	9	328	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	8	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0399	0.1064	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1463	FALSE	189	492	56	216	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFA4--PHF14	5	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0665	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0665	TRUE	19	32	3	60	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0665	TRUE	0	0	0	434	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0665	TRUE	0	0	0	518	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11218	17330	0	0	0.0532	0.0399	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0931	FALSE	183	104	9	328	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	7	MT-ND1	1303	chrM:3609:+	MT-RNR2	5007	chrM:1721:+	INCL_NON_REF_SPLICE	YES	31	0	0.24	1	0.0399	0.0931	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.133	FALSE	114	26	4	85	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	NO	8221	0	0	1	0.0532	0.0133	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0665	FALSE	63	17	1	58	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	NO	9088	0	0	1	0.0532	0.0133	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0665	FALSE	63	17	1	58	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	9471	9657	0	0	0.0532	0.0133	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0665	FALSE	63	17	1	58	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	5	MT-ND1	1260	chrM:3566:+	MT-RNR2	4975	chrM:1689:+	INCL_NON_REF_SPLICE	YES	20	0	0.29	1	0.0399	0.0665	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.1064	FALSE	114	26	4	85	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	4	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.29	1	0.0532	0.0133	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.0665	FALSE	164	806	69	479	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CYTH1--USP36	4	0	CYTH1	1096	chr17:76778284:-	USP36	28423	chr17:76834832:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0532	0	LOCAL_REARRANGEMENT:-:[5084],CYTH1->chr17:76670130-76778379:-,cytohesin_1,USP36->chr17:76783463-76837523:-,ubiquitin_specific_peptidase_36	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0532	TRUE	0	1	0	3	1	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0532	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0532	FALSE	183	104	9	328	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0532	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0532	FALSE	183	104	9	328	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	4	MT-ND1	1297	chrM:3603:+	MT-RNR2	5502	chrM:2216:+	INCL_NON_REF_SPLICE	YES	28	9813	0.2	0	0.0399	0.0532	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.2	0.0931	FALSE	120	26	5	87	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0532	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0532	TRUE	0	0	0	434	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	2	MT-ND1	1235	chrM:3541:+	MT-RNR2	5565	chrM:2279:+	INCL_NON_REF_SPLICE	YES	21	9551	0.19	0	0.0399	0.0266	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.19	0.0665	FALSE	120	26	5	87	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--CHMP1A	3	1	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	208	120	0.02	0.03	0.0399	0.0133	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0532	TRUE	95	74	6	34	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HMGA1--MT-ND4L	3	1	HMGA1	7583	chr6:34213592:+	MT-ND4L	11015	chrM:10485:+	INCL_NON_REF_SPLICE	YES	804	0	0	1	0.0399	0.0133	HMGA1->Oncogene{Bushman},chr6:34204650-34214008:+,high_mobility_group_AT-hook_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0532	FALSE	0	0	0	2	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9374	17472	0	0	0.0399	0.0133	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0532	FALSE	183	104	9	328	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0399	0.0133	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0532	FALSE	292	1546	117	613	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTB--FSCN1	3	0	ACTB	1071	chr7:5603345:-	FSCN1	14341	chr7:5642888:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	LOCAL_INVERSION:-:+:[29024],ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1153	chrM:9359:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	FALSE	189	492	56	216	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	FALSE	499	1288	110	792	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	FALSE	499	1288	110	792	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-114H23.1--RP11-114H23.2	3	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	FALSE	81	155	12	160	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCEH1--SPATA16	2	3	NCEH1	1372	chr3:172428637:-	SPATA16	16751	chr3:172737365:-	ONLY_REF_SPLICE	YES	14	2	0.26	0.71	0.0266	0.0399	NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,SPATA16->chr3:172607148-172859058:-,spermatogenesis_associated_16	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.71	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FARS2--RP3-380B8.4	2	0	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0266	FALSE	27	82	4	18	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--CMC4	2	0	PROSC	2996	chr8:37623873:+	CMC4	15400	chrX:154292308:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CMC4->C-x(9)-C_motif_containing_4,chrX:154289897-154299637:-	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0266	TRUE	0	1	0	1	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--FUS	2	0	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0266	TRUE	5	20	0	32	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0266	TRUE	62	24	1	171	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZC3H3--EEF1D	2	0	ZC3H3	5747	chr8:144589916:-	EEF1D	28609	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[38244],ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0266	TRUE	1	0	0	2	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0133	0.0266	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	274	363	69	150	0	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001432.14--TTC3	1	1	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	3	17	0.4	0.11	0.0133	0.0133	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.4	0.0266	TRUE	0	0	0	15	0	TRUE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--PHF14	1	1	DANCR	1530	chr4:53579126:+	PHF14	31809	chr7:11150977:+	ONLY_REF_SPLICE	YES	214	130	0.01	0.02	0.0133	0.0133	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0266	FALSE	0	5	0	5	1	FALSE	ACH-000754
L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPLP1--KIF23	1	1	RPLP1	1938	chr15:69746060:+	KIF23	16465	chr15:69721450:+	ONLY_REF_SPLICE	YES	4169	86	0	0.02	0.0133	0.0133	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[4359],RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,KIF23->chr15:69706585-69740764:+,kinesin_family_member_23	L428_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0266	FALSE	0	0	0	5	0	FALSE	ACH-000754
OC314_OVARY	CENPH--CCNB1	75	82	CENPH	8942	chr5:68504186:+	CCNB1	17111	chr5:68470078:+	ONLY_REF_SPLICE	YES	266	1252	0.37	0.11	0.8679	0.949	LOCAL_REARRANGEMENT:+:[11303],CENPH->centromere_protein_H,chr5:68485375-68506184:+,CCNB1->Oncogene{Bushman},chr5:68462837-68474072:+,cyclin_B1	OC314_OVARY	0.11	0.37	1.8169	TRUE	0	0	0	1	0	TRUE	ACH-000962
OC314_OVARY	KANSL1--ARL17B	66	47	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	60	158	0.65	0.42	0.7638	0.5439	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	OC314_OVARY	0.42	0.65	1.3077	TRUE	181	1564	124	196	0	FALSE	ACH-000962
OC314_OVARY	TIMM23B--LINC00843	65	38	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7522	0.4398	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OC314_OVARY	0.99	1	1.192	TRUE	508	994	45	981	0	FALSE	ACH-000962
OC314_OVARY	PHTF2--DPYD	45	47	PHTF2	2338	chr7:77469617:+	DPYD	44090	chr1:98060722:-	ONLY_REF_SPLICE	YES	138	7	0.4	0.93	0.5208	0.5439	PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	OC314_OVARY	0.4	0.93	1.0647	TRUE	0	0	0	1	0	TRUE	ACH-000962
OC314_OVARY	MSH2--RP11-467L13.5	45	45	MSH2	7299	chr2:47643568:+	RP11-467L13.5	26597	chr12:31907695:+	INCL_NON_REF_SPLICE	YES	265	0	0.25	1	0.5208	0.5208	MSH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47630108-47789450:+,mutS_homolog_2,RP11-467L13.5->chr12:31907651-31908055:+	OC314_OVARY	0.25	1	1.0416	TRUE	0	0	0	1	0	TRUE	ACH-000962
OC314_OVARY	PLXDC1--TAF13	50	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5786	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	OC314_OVARY	1	1	0.5786	TRUE	7	10	0	216	0	FALSE	ACH-000962
OC314_OVARY	TIMM23--RP11-464F9.1	46	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	449	7	0.11	0.89	0.5323	0.0926	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OC314_OVARY	0.11	0.89	0.6249	TRUE	519	3926	326	965	0	FALSE	ACH-000962
OC314_OVARY	MT-ND5--MT-ATP8	36	11	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5743	15	0.01	0.76	0.4166	0.1273	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OC314_OVARY	0.01	0.76	0.5439	FALSE	43	37	8	105	0	FALSE	ACH-000962
OC314_OVARY	MT-TA--MT-TC	30	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3472	0.0463	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OC314_OVARY	1	1	0.3935	FALSE	462	80	0	856	0	FALSE	ACH-000962
OC314_OVARY	NPM1P24--SET	27	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3125	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OC314_OVARY	1	1	0.3125	TRUE	0	0	0	434	0	FALSE	ACH-000962
OC314_OVARY	MT-ND5--MT-ATP8	16	20	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	6	0	0.86	1	0.1852	0.2315	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OC314_OVARY	0.86	1	0.4167	FALSE	43	37	8	105	0	FALSE	ACH-000962
OC314_OVARY	MT-ATP6--MT-CO2	18	6	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	52	2	0.32	0.92	0.2083	0.0694	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OC314_OVARY	0.32	0.92	0.2777	FALSE	59	21	0	114	0	FALSE	ACH-000962
OC314_OVARY	NRIP1--AF127936.7	17	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.9	1	0.1967	0.0116	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OC314_OVARY	0.9	1	0.2083	FALSE	292	1546	117	613	0	FALSE	ACH-000962
OC314_OVARY	MT-ATP6--MT-CO2	14	10	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	61	2	0.28	0.92	0.162	0.1157	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OC314_OVARY	0.28	0.92	0.2777	FALSE	59	21	0	114	0	FALSE	ACH-000962
OC314_OVARY	NRIP1--AF127936.7	11	20	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	55	0	0.36	1	0.1273	0.2315	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OC314_OVARY	0.36	1	0.3588	FALSE	164	806	69	479	0	FALSE	ACH-000962
OC314_OVARY	MT-ND6--MT-TE	14	0	MT-ND6	1051	chrM:14623:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.162	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OC314_OVARY	1	1	0.162	FALSE	499	1288	110	792	0	FALSE	ACH-000962
OC314_OVARY	PHTF2--DPYD	1	47	PHTF2	3440	chr7:77484151:+	DPYD	44090	chr1:98060722:-	ONLY_REF_SPLICE	YES	146	7	0.25	0.87	0.0116	0.5439	PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	OC314_OVARY	0.25	0.87	0.5555	TRUE	0	0	0	1	0	TRUE	ACH-000962
OC314_OVARY	RP11-123O10.4--GRIP1	12	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1389	0.0347	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OC314_OVARY	1	1	0.1736	FALSE	416	2512	207	587	0	FALSE	ACH-000962
OC314_OVARY	CENPH--CCNB1	3	34	CENPH	8942	chr5:68504186:+	CCNB1	17737	chr5:68470704:+	ONLY_REF_SPLICE	YES	266	1507	0.12	0.02	0.0347	0.3935	LOCAL_REARRANGEMENT:+:[11303],CENPH->centromere_protein_H,chr5:68485375-68506184:+,CCNB1->Oncogene{Bushman},chr5:68462837-68474072:+,cyclin_B1	OC314_OVARY	0.02	0.12	0.4282	TRUE	0	0	0	1	0	FALSE	ACH-000962
OC314_OVARY	MT-ATP6--MT-CO2	11	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	41	2	0.23	0.86	0.1273	0.0116	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OC314_OVARY	0.23	0.86	0.1389	FALSE	59	21	0	114	0	FALSE	ACH-000962
OC314_OVARY	MT-ND6--MT-TE	10	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.1157	0.0579	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OC314_OVARY	0.88	1	0.1736	FALSE	499	1288	110	792	0	FALSE	ACH-000962
OC314_OVARY	AP000525.9--LA16c-60G3.6	11	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1273	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	OC314_OVARY	1	1	0.1273	TRUE	0	42	0	133	42	FALSE	ACH-000962
OC314_OVARY	NRIP1--AF127936.7	8	11	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	34	0	0.36	1	0.0926	0.1273	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OC314_OVARY	0.36	1	0.2199	FALSE	125	705	46	456	0	FALSE	ACH-000962
OC314_OVARY	MT-ATP6--MT-CO2	7	13	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	61	2	0.25	0.91	0.081	0.1504	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OC314_OVARY	0.25	0.91	0.2314	FALSE	59	21	0	114	0	FALSE	ACH-000962
OC314_OVARY	MT-ND5--MT-ATP8	6	11	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	6297	0	0	1	0.0694	0.1273	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OC314_OVARY	0	1	0.1967	FALSE	43	37	8	105	0	FALSE	ACH-000962
OC314_OVARY	RP11-634B7.4--TRIM58	5	14	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	2	26	0.9	0.42	0.0579	0.162	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	OC314_OVARY	0.42	0.9	0.2199	TRUE	158	633	76	73	0	FALSE	ACH-000962
OC314_OVARY	MT-ATP6--MT-CO2	5	13	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	60	2	0.23	0.9	0.0579	0.1504	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OC314_OVARY	0.23	0.9	0.2083	FALSE	59	21	0	114	0	FALSE	ACH-000962
OC314_OVARY	RP11-120D5.1--MID1	7	5	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	7	47	0.63	0.2	0.081	0.0579	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OC314_OVARY	0.2	0.63	0.1389	FALSE	0	9	0	55	0	FALSE	ACH-000962
OC314_OVARY	MT-ATP6--MT-CO2	5	10	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	NO	61	2	0.2	0.88	0.0579	0.1157	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OC314_OVARY	0.2	0.88	0.1736	FALSE	59	21	0	114	0	FALSE	ACH-000962
OC314_OVARY	MT-ND5--MT-ATP8	4	13	MT-ND5	2514	chrM:13850:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4634	89	0	0.16	0.0463	0.1504	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OC314_OVARY	0	0.16	0.1967	FALSE	43	37	8	105	0	FALSE	ACH-000962
OC314_OVARY	MT-ND5--MT-ATP8	5	8	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8734	89	0	0.13	0.0579	0.0926	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OC314_OVARY	0	0.13	0.1505	FALSE	43	37	8	105	0	FALSE	ACH-000962
OC314_OVARY	RP11-96H19.1--RP11-446N19.1	5	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.0579	0.0926	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OC314_OVARY	0.76	1	0.1505	FALSE	515	4851	409	746	0	FALSE	ACH-000962
OC314_OVARY	MT-ND5--MT-ATP8	3	15	MT-ND5	2449	chrM:13785:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4446	0	0	1	0.0347	0.1736	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OC314_OVARY	0	1	0.2083	FALSE	43	37	8	105	0	FALSE	ACH-000962
OC314_OVARY	MT-TA--MT-TC	5	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0.0694	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OC314_OVARY	1	1	0.1273	FALSE	462	80	0	856	0	FALSE	ACH-000962
OC314_OVARY	MT-ND5--MT-ATP8	3	13	MT-ND5	2290	chrM:13626:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5068	0	0	1	0.0347	0.1504	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OC314_OVARY	0	1	0.1851	FALSE	43	37	8	105	0	FALSE	ACH-000962
OC314_OVARY	RAD23A--PCDH7	5	3	RAD23A	3727	chr19:13060222:+	PCDH7	16573	chr4:30921775:+	ONLY_REF_SPLICE	YES	312	0	0.03	1	0.0579	0.0347	RAD23A->Oncogene{Bushman},RAD23_homolog_A,_nucleotide_excision_repair_protein,chr19:13056669-13064456:+,PCDH7->chr4:30722037-31148422:+,protocadherin_7	OC314_OVARY	0.03	1	0.0926	TRUE	0	0	0	1	0	FALSE	ACH-000962
OC314_OVARY	ZDHHC14--TGFBR3	4	7	ZDHHC14	2134	chr6:157803298:+	TGFBR3	43769	chr1:92187701:-	ONLY_REF_SPLICE	YES	15	3	0.42	0.79	0.0463	0.081	ZDHHC14->Oncogene{Bushman},chr6:157802165-158099178:+,zinc_finger_DHHC-type_containing_14,TGFBR3->Oncogene{Bushman},chr1:92145902-92371892:-,transforming_growth_factor_beta_receptor_3	OC314_OVARY	0.42	0.79	0.1273	TRUE	0	0	0	1	0	TRUE	ACH-000962
OC314_OVARY	MT-ND6--MT-TE	4	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0.0579	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OC314_OVARY	1	1	0.1042	FALSE	499	1288	110	792	0	FALSE	ACH-000962
OC314_OVARY	MT-TA--MT-TC	4	5	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0.0579	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OC314_OVARY	1	1	0.1042	FALSE	462	80	0	856	0	FALSE	ACH-000962
OC314_OVARY	PODXL2--ADCY5	5	1	PODXL2	7007	chr3:127388045:+	ADCY5	36175	chr3:123019142:-	ONLY_REF_SPLICE	YES	23	1	0.21	0.86	0.0579	0.0116	PODXL2->chr3:127348024-127391652:+,podocalyxin_like_2,ADCY5->adenylate_cyclase_5,chr3:123001143-123168605:-	OC314_OVARY	0.21	0.86	0.0695	TRUE	0	0	0	1	0	TRUE	ACH-000962
OC314_OVARY	RP11-120D5.1--MID1	4	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	47	0.56	0.16	0.0463	0.0579	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OC314_OVARY	0.16	0.56	0.1042	FALSE	16	356	14	466	0	FALSE	ACH-000962
OC314_OVARY	MT-TA--MT-TC	5	0	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OC314_OVARY	1	1	0.0579	FALSE	462	80	0	856	0	FALSE	ACH-000962
OC314_OVARY	PHTF2--DPYD	3	8	PHTF2	2338	chr7:77469617:+	DPYD	46368	chr1:98039526:-	ONLY_REF_SPLICE	YES	138	97	0.07	0.1	0.0347	0.0926	PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	OC314_OVARY	0.07	0.1	0.1273	TRUE	0	0	0	1	0	FALSE	ACH-000962
OC314_OVARY	RP11-96H19.1--RP11-446N19.1	2	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.0231	0.1273	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OC314_OVARY	0.76	1	0.1504	FALSE	407	2205	196	549	0	FALSE	ACH-000962
OC314_OVARY	MT-ATP6--MT-CO2	4	2	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	47	2	0.11	0.75	0.0463	0.0231	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OC314_OVARY	0.11	0.75	0.0694	FALSE	59	21	0	114	0	FALSE	ACH-000962
OC314_OVARY	MT-ND5--MT-ATP8	3	6	MT-ND5	1736	chrM:13072:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	6022	0	0	1	0.0347	0.0694	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OC314_OVARY	0	1	0.1041	FALSE	43	37	8	105	0	FALSE	ACH-000962
OC314_OVARY	DHX40--VMP1	4	1	DHX40	13568	chr17:57676844:+	VMP1	38423	chr17:57915656:+	ONLY_REF_SPLICE	YES	239	788	0.02	0.01	0.0463	0.0116	NEIGHBORS[98847],DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	OC314_OVARY	0.01	0.02	0.0579	FALSE	0	0	0	2	0	FALSE	ACH-000962
OC314_OVARY	FNDC3A--RP11-483I13.2	3	5	FNDC3A	3144	chr13:49580425:+	RP11-483I13.2	37418	chr1:108805412:-	ONLY_REF_SPLICE	YES	59	1	0.12	0.89	0.0347	0.0579	FNDC3A->chr13:49550048-49783915:+,fibronectin_type_III_domain_containing_3A,RP11-483I13.2->chr1:108803818-108816311:-	OC314_OVARY	0.12	0.89	0.0926	TRUE	0	0	0	1	0	TRUE	ACH-000962
OC314_OVARY	MT-TA--MT-TC	3	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0.0579	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OC314_OVARY	1	1	0.0926	FALSE	462	80	0	856	0	FALSE	ACH-000962
OC314_OVARY	NCOR2--MT-ATP8	4	1	NCOR2	43093	chr12:124825215:-	MT-ATP8	59836	chrM:8468:+	INCL_NON_REF_SPLICE	YES	409	15	0.01	0.25	0.0463	0.0116	NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OC314_OVARY	0.01	0.25	0.0579	FALSE	0	0	0	1	0	FALSE	ACH-000962
OC314_OVARY	NRIP1--AF127936.7	3	5	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	55	22	0.13	0.27	0.0347	0.0579	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OC314_OVARY	0.13	0.27	0.0926	FALSE	8	57	1	47	0	FALSE	ACH-000962
OC314_OVARY	RP11-96H19.1--RP11-446N19.1	2	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0231	0.1042	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OC314_OVARY	0.92	1	0.1273	FALSE	467	2173	244	435	0	FALSE	ACH-000962
OC314_OVARY	AC073072.5--STEAP1B	4	0	AC073072.5	1053	chr7:22767187:-	STEAP1B	6230	chr7:22672541:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0	NEIGHBORS[92470],AC073072.5->chr7:22765014-22767239:-,STEAP1B->STEAP_family_member_1B,chr7:22459063-22672544:-	OC314_OVARY	1	1	0.0463	FALSE	0	0	0	5	0	FALSE	ACH-000962
OC314_OVARY	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OC314_OVARY	1	1	0.0463	TRUE	0	0	0	434	0	FALSE	ACH-000962
OC314_OVARY	MT-ATP6--MT-CO2	3	2	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	36	2	0.12	0.71	0.0347	0.0231	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OC314_OVARY	0.12	0.71	0.0578	FALSE	59	21	0	114	0	FALSE	ACH-000962
OC314_OVARY	EEF2--MYH9	3	1	EEF2	8201	chr19:3978111:-	MYH9	34665	chr22:36700129:-	INCL_NON_REF_SPLICE	NO	6042	1696	0	0	0.0347	0.0116	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	OC314_OVARY	0	0	0.0463	FALSE	0	0	0	1	0	FALSE	ACH-000962
OC314_OVARY	MCTP1--KIAA0825	3	1	MCTP1	8550	chr5:94353071:-	KIAA0825	46138	chr5:93918288:-	ONLY_REF_SPLICE	YES	60	0	0.06	1	0.0347	0.0116	NEIGHBORS[85137],MCTP1->chr5:94039446-94620279:-,multiple_C2_and_transmembrane_domain_containing_1,KIAA0825->KIAA0825,chr5:93488671-93954309:-	OC314_OVARY	0.06	1	0.0463	FALSE	0	0	0	1	0	FALSE	ACH-000962
OC314_OVARY	NCOR2--MT-ATP8	3	1	NCOR2	43098	chr12:124825210:-	MT-ATP8	59836	chrM:8468:+	INCL_NON_REF_SPLICE	YES	406	15	0.01	0.21	0.0347	0.0116	NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OC314_OVARY	0.01	0.21	0.0463	FALSE	0	0	0	1	0	FALSE	ACH-000962
OC314_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OC314_OVARY	1	1	0.0347	FALSE	499	1288	110	792	0	FALSE	ACH-000962
OC314_OVARY	TRAPPC9--KCNK9	3	0	TRAPPC9	55504	chr8:140898123:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	OC314_OVARY	1	1	0.0347	FALSE	7	13	2	16	0	FALSE	ACH-000962
OC314_OVARY	CENPH--CCNB1	1	7	CENPH	6912	chr5:68498396:+	CCNB1	17737	chr5:68470704:+	ONLY_REF_SPLICE	YES	339	1507	0.02	0.01	0.0116	0.081	LOCAL_REARRANGEMENT:+:[11303],CENPH->centromere_protein_H,chr5:68485375-68506184:+,CCNB1->Oncogene{Bushman},chr5:68462837-68474072:+,cyclin_B1	OC314_OVARY	0.01	0.02	0.0926	FALSE	0	0	0	1	0	FALSE	ACH-000962
OC314_OVARY	PROSC--CHMP1A	2	2	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	514	843	0.01	0	0.0231	0.0231	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	OC314_OVARY	0	0.01	0.0462	FALSE	13	55	3	29	0	FALSE	ACH-000962
OC314_OVARY	GTF2H3--TMED2	2	0	GTF2H3	1045	chr12:124118419:+	TMED2	19062	chr12:124071294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	LOCAL_REARRANGEMENT:+:[35259],GTF2H3->chr12:124118375-124147153:+,general_transcription_factor_IIH_subunit_3,TMED2->chr12:124069078-124083116:+,transmembrane_p24_trafficking_protein_2	OC314_OVARY	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000962
OC314_OVARY	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OC314_OVARY	1	1	0.0231	FALSE	25	145	6	90	0	FALSE	ACH-000962
OC314_OVARY	R3HDM2--SH3YL1	2	0	R3HDM2	8772	chr12:57691873:-	SH3YL1	53690	chr2:231191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,SH3YL1->SH3_and_SYLF_domain_containing_1,chr2:217730-266398:-	OC314_OVARY	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000962
OC314_OVARY	RP11-85K15.2--SRP54	2	0	RP11-85K15.2	1109	chr14:35451630:-	SRP54	16520	chr14:35465883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	NEIGHBORS_OVERLAP:-:+:[575],RP11-85K15.2->chr14:35390064-35451738:-,SRP54->chr14:35451163-35498773:+,signal_recognition_particle_54kDa	OC314_OVARY	1	1	0.0231	FALSE	1	0	0	2	0	FALSE	ACH-000962
OC314_OVARY	PHTF2--DPYD	1	3	PHTF2	1167	chr7:77428288:+	DPYD	46368	chr1:98039526:-	ONLY_REF_SPLICE	NO	113	97	0.03	0.04	0.0116	0.0347	PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	OC314_OVARY	0.03	0.04	0.0463	TRUE	0	0	0	1	0	FALSE	ACH-000962
OC314_OVARY	TIMM23B--LINC00843	1	3	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0116	0.0347	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OC314_OVARY	1	1	0.0463	TRUE	62	24	1	171	0	FALSE	ACH-000962
OC314_OVARY	ZNF738--CHMP1A	1	3	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	96	843	0.04	0	0.0116	0.0347	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	OC314_OVARY	0	0.04	0.0463	FALSE	1	20	1	28	3	FALSE	ACH-000962
OC314_OVARY	GPR126--VTA1	1	1	GPR126	2987	chr6:142630781:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	YES	831	281	0	0.01	0.0116	0.0116	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	OC314_OVARY	0	0.01	0.0232	FALSE	0	2	0	15	1	FALSE	ACH-000962
OC314_OVARY	RRP7B--GAS5	1	1	RRP7B	1110	chr22:42977935:-	GAS5	19573	chr1:173833644:-	ONLY_REF_SPLICE	YES	1	1310	0.67	0	0.0116	0.0116	RRP7B->chr22:42951229-42978044:-,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	OC314_OVARY	0	0.67	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000962
OC314_OVARY	SECISBP2--ATP6V1E1	1	1	SECISBP2	2292	chr9:91934712:+	ATP6V1E1	33370	chr22:18082861:-	ONLY_REF_SPLICE	YES	74	438	0.03	0	0.0116	0.0116	SECISBP2->SECIS_binding_protein_2,chr9:91933421-91974557:+,ATP6V1E1->ATPase_H+_transporting_V1_subunit_E1,chr22:18074902-18111584:-	OC314_OVARY	0	0.03	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000962
TT_OESOPHAGUS	FDPS--DCST1	144	106	FDPS	5512	chr1:155287812:+	DCST1	13570	chr1:155011879:+	ONLY_REF_SPLICE	YES	553	7	0.31	0.97	1.8061	1.3295	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,DCST1->DC-STAMP_domain_containing_1,chr1:155006300-155023406:+	TT_OESOPHAGUS	0.31	0.97	3.1356	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	ATL2--HS1BP3	73	50	ATL2	13271	chr2:38536521:-	HS1BP3	24821	chr2:20840940:-	ONLY_REF_SPLICE	YES	253	102	0.33	0.55	0.9156	0.6271	ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HS1BP3->HCLS1_binding_protein_3,chr2:20760208-20850849:-	TT_OESOPHAGUS	0.33	0.55	1.5427	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	TIMM23B--LINC00843	56	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7024	0.4139	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TT_OESOPHAGUS	1	1	1.1163	TRUE	508	994	45	981	0	FALSE	ACH-000561
TT_OESOPHAGUS	SPTBN2--PPP6R3	52	43	SPTBN2	26699	chr11:66453869:-	PPP6R3	47379	chr11:68337216:+	ONLY_REF_SPLICE	YES	328	615	0.22	0.13	0.6522	0.5393	SPTBN2->chr11:66452719-66496697:-,spectrin_beta,_non-erythrocytic_2,PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3	TT_OESOPHAGUS	0.13	0.22	1.1915	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	MT-TA--MT-TC	56	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7024	0.0627	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TT_OESOPHAGUS	1	1	0.7651	FALSE	462	80	0	856	0	FALSE	ACH-000561
TT_OESOPHAGUS	ZNF184--PPP2R5D	33	24	ZNF184	2899	chr6:27435632:-	PPP2R5D	13303	chr6:42974201:+	ONLY_REF_SPLICE	YES	77	225	0.43	0.2	0.4139	0.301	ZNF184->chr6:27418522-27440897:-,zinc_finger_protein_184,PPP2R5D->chr6:42952237-42980080:+,protein_phosphatase_2_regulatory_subunit_B',_delta	TT_OESOPHAGUS	0.2	0.43	0.7149	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	TIMM23--RP11-464F9.1	30	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	305	18	0.1	0.65	0.3763	0.0502	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TT_OESOPHAGUS	0.1	0.65	0.4265	TRUE	519	3926	326	965	0	FALSE	ACH-000561
TT_OESOPHAGUS	C15orf57--CBX3	24	26	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	96	61	0.34	0.45	0.301	0.3261	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TT_OESOPHAGUS	0.34	0.45	0.6271	TRUE	267	562	48	632	0	FALSE	ACH-000561
TT_OESOPHAGUS	LMTK2--ARPC1B	27	14	LMTK2	1396	chr7:97736592:+	ARPC1B	30792	chr7:98983325:+	ONLY_REF_SPLICE	YES	11	99	0.79	0.29	0.3386	0.1756	LMTK2->chr7:97736197-97838945:+,lemur_tyrosine_kinase_2,ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+	TT_OESOPHAGUS	0.29	0.79	0.5142	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	NBAS--AC007092.1	25	17	NBAS	32799	chr2:15519726:-	AC007092.1	81765	chr2:59285696:+	ONLY_REF_SPLICE	YES	29	0	0.59	1	0.3136	0.2132	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC007092.1->chr2:58654934-59290901:+	TT_OESOPHAGUS	0.59	1	0.5268	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	RP11-1H15.2--SWAP70	26	13	RP11-1H15.2	1134	chr11:9860823:+	SWAP70	22353	chr11:9769405:+	ONLY_REF_SPLICE	YES	0	182	1	0.18	0.3261	0.163	LOCAL_REARRANGEMENT:+:[86152],RP11-1H15.2->chr11:9860690-9950810:+,SWAP70->Oncogene{Bushman},SWAP_switching_B-cell_complex_70kDa_subunit,chr11:9685624-9774538:+	TT_OESOPHAGUS	0.18	1	0.4891	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ND4L	5	93	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	1855	0	0.05	1	0.0627	1.1664	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_OESOPHAGUS	0.05	1	1.2291	FALSE	344	827	44	306	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	26	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16628	7	0	0.8	0.3261	0.0251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	0.8	0.3512	FALSE	230	198	14	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ND4L	4	89	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	149	0	0.38	1	0.0502	1.1163	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_OESOPHAGUS	0.38	1	1.1665	FALSE	344	827	44	306	0	FALSE	ACH-000561
TT_OESOPHAGUS	FDPS--DCST1	15	44	FDPS	5512	chr1:155287812:+	DCST1	14652	chr1:155012961:+	ONLY_REF_SPLICE	YES	553	30	0.1	0.66	0.1881	0.5519	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,DCST1->DC-STAMP_domain_containing_1,chr1:155006300-155023406:+	TT_OESOPHAGUS	0.1	0.66	0.74	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	NEMF--SOS2	16	29	NEMF	18819	chr14:50280706:-	SOS2	58231	chr14:50605502:-	ONLY_REF_SPLICE	YES	127	45	0.26	0.5	0.2007	0.3637	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-	TT_OESOPHAGUS	0.26	0.5	0.5644	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	15	31	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	23776	0	0	1	0.1881	0.3888	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	1	0.5769	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	17	23	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	23744	7	0	0.85	0.2132	0.2885	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	0.85	0.5017	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	15	19	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	24946	0	0	1	0.1881	0.2383	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	1	0.4264	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	RALB--STEAP3	14	23	RALB	6482	chr2:121043658:+	STEAP3	15792	chr2:119996939:+	ONLY_REF_SPLICE	YES	1559	67	0.02	0.36	0.1756	0.2885	RALB->Oncogene{Bushman},chr2:120997640-121052289:+,v-ral_simian_leukemia_viral_oncogene_homolog_B,STEAP3->STEAP3_metalloreductase,chr2:119981384-120023228:+	TT_OESOPHAGUS	0.02	0.36	0.4641	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	19	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	16423	5	0	0.81	0.2383	0.0251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	0.81	0.2634	FALSE	230	193	14	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	HSDL2--SNX30	16	12	HSDL2	12593	chr9:115221857:+	SNX30	19893	chr9:115567056:+	ONLY_REF_SPLICE	YES	22	1	0.56	0.97	0.2007	0.1505	HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2,SNX30->chr9:115513118-115643951:+,sorting_nexin_family_member_30	TT_OESOPHAGUS	0.56	0.97	0.3512	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	7	46	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0878	0.5769	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0.98	1	0.6647	FALSE	209	205	15	279	0	FALSE	ACH-000561
TT_OESOPHAGUS	NBAS--AC007092.1	15	14	NBAS	32799	chr2:15519726:-	AC007092.1	82801	chr2:59287914:+	ONLY_REF_SPLICE	YES	29	0	0.5	1	0.1881	0.1756	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC007092.1->chr2:58654934-59290901:+	TT_OESOPHAGUS	0.5	1	0.3637	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ND4L	3	57	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	36	1	0.62	0.98	0.0376	0.7149	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_OESOPHAGUS	0.62	0.98	0.7525	FALSE	344	826	44	306	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	8	32	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	19628	195	0	0.17	0.1003	0.4014	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	0.17	0.5017	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ATP6--MT-CO2	14	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	57	6	0.24	0.75	0.1756	0.0502	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TT_OESOPHAGUS	0.24	0.75	0.2258	FALSE	59	21	0	114	0	FALSE	ACH-000561
TT_OESOPHAGUS	DARS--KCNMA1	13	7	DARS	4970	chr2:136736844:-	KCNMA1	44936	chr10:78787649:-	ONLY_REF_SPLICE	YES	866	0	0.02	1	0.163	0.0878	DARS->aspartyl-tRNA_synthetase,chr2:136664247-136743670:-,KCNMA1->chr10:78629359-79398353:-,potassium_calcium-activated_channel_subfamily_M_alpha_1	TT_OESOPHAGUS	0.02	1	0.2508	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	SMARCA4--GMEB2	12	11	SMARCA4	1253	chr19:11071850:+	GMEB2	51685	chr20:62229213:-	ONLY_REF_SPLICE	YES	67	67	0.26	0.26	0.1505	0.138	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,GMEB2->chr20:62218955-62258394:-,glucocorticoid_modulatory_element_binding_protein_2	TT_OESOPHAGUS	0.26	0.26	0.2885	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	3	46	MT-ND4	2226	chrM:11985:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	5002	0	0.01	1	0.0376	0.5769	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0.01	1	0.6145	FALSE	216	209	16	281	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	3	46	MT-ND4	2231	chrM:11990:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	4341	0	0.01	1	0.0376	0.5769	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0.01	1	0.6145	FALSE	216	209	16	281	0	FALSE	ACH-000561
TT_OESOPHAGUS	GCLC--DCUN1D3	12	9	GCLC	1085	chr6:53481684:-	DCUN1D3	27615	chr16:20873965:-	ONLY_REF_SPLICE	YES	158	23	0.12	0.48	0.1505	0.1129	GCLC->chr6:53362139-53481768:-,glutamate-cysteine_ligase_catalytic_subunit,DCUN1D3->chr16:20866247-20911706:-,defective_in_cullin_neddylation_1_domain_containing_3	TT_OESOPHAGUS	0.12	0.48	0.2634	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	4	40	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	22259	0	0	1	0.0502	0.5017	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	1	0.5519	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	4	40	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	22310	0	0	1	0.0502	0.5017	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	1	0.5519	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ND4L	11	12	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	146	1	0.14	0.96	0.138	0.1505	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_OESOPHAGUS	0.14	0.96	0.2885	FALSE	344	826	44	306	0	FALSE	ACH-000561
TT_OESOPHAGUS	ASXL2--PDIA6	11	11	ASXL2	2434	chr2:26068350:-	PDIA6	35039	chr2:10961648:-	INCL_NON_REF_SPLICE	YES	36	0	0.38	1	0.138	0.138	ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,PDIA6->chr2:10923517-10978103:-,protein_disulfide_isomerase_family_A_member_6	TT_OESOPHAGUS	0.38	1	0.276	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	11	11	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	8	0	0.73	1	0.138	0.138	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	TT_OESOPHAGUS	0.73	1	0.276	FALSE	20	187	4	79	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	4	39	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	22693	0	0	1	0.0502	0.4891	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	1	0.5393	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	JUP--MT-CO3	10	13	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	2137	24095	0.01	0	0.1254	0.163	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TT_OESOPHAGUS	0	0.01	0.2884	FALSE	0	0	0	33	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	5	32	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19628	75	0	0.33	0.0627	0.4014	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	0.33	0.4641	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	4	36	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	22462	0	0	1	0.0502	0.4515	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	1	0.5017	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	4	36	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	21013	0	0	1	0.0502	0.4515	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	1	0.5017	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	6	27	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	23451	0	0	1	0.0753	0.3386	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	1	0.4139	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	8	18	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	24937	0	0	1	0.1003	0.2258	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	1	0.3261	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	RP11-680G10.1--GSE1	11	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	38	1	0.31	0.138	0.0753	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TT_OESOPHAGUS	0.31	1	0.2133	TRUE	465	1949	224	605	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	3	37	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	20882	0	0	1	0.0376	0.4641	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	1	0.5017	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	5	29	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	23531	0	0	1	0.0627	0.3637	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	1	0.4264	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	9	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.92	0.96	0.1129	0.163	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TT_OESOPHAGUS	0.92	0.96	0.2759	FALSE	515	4851	409	746	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	3	36	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2953	75	0.01	0.34	0.0376	0.4515	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0.01	0.34	0.4891	FALSE	216	209	16	281	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ND4L	9	12	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1663	1	0.01	0.95	0.1129	0.1505	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_OESOPHAGUS	0.01	0.95	0.2634	FALSE	344	827	44	306	0	FALSE	ACH-000561
TT_OESOPHAGUS	STRN3--HECTD1	10	8	STRN3	1498	chr14:31495110:-	HECTD1	44333	chr14:31609203:-	ONLY_REF_SPLICE	YES	169	431	0.1	0.04	0.1254	0.1003	LOCAL_REARRANGEMENT:-:[73711],STRN3->chr14:31363005-31495607:-,striatin_3,HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-	TT_OESOPHAGUS	0.04	0.1	0.2257	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	4	30	MT-ND4	1788	chrM:11547:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	23632	0	0	1	0.0502	0.3763	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	1	0.4265	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	3	33	MT-ND4	1994	chrM:11753:+	MT-ATP8	5470	chrM:8457:+	INCL_NON_REF_SPLICE	YES	20579	0	0	1	0.0376	0.4139	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	1	0.4515	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	8	12	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	23973	1401	0	0.01	0.1003	0.1505	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	0.01	0.2508	FALSE	231	205	14	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-TA--MT-TC	9	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1129	0.0878	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TT_OESOPHAGUS	1	1	0.2007	FALSE	462	80	0	856	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	4	26	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	23047	75	0	0.29	0.0502	0.3261	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	0.29	0.3763	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ND4L	5	22	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0627	0.2759	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_OESOPHAGUS	0.9	1	0.3386	FALSE	344	821	44	306	0	FALSE	ACH-000561
TT_OESOPHAGUS	TXNRD1--HCFC2	9	6	TXNRD1	26397	chr12:104728110:+	HCFC2	45620	chr12:104487164:+	ONLY_REF_SPLICE	YES	1176	11	0.01	0.58	0.1129	0.0753	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,HCFC2->chr12:104458235-104498639:+,host_cell_factor_C2	TT_OESOPHAGUS	0.01	0.58	0.1882	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	ZNF429--LINC00664	8	10	ZNF429	3403	chr19:21688576:+	LINC00664	23513	chr19:21672467:+	ONLY_REF_SPLICE	YES	30	1	0.38	0.95	0.1003	0.1254	NEIGHBORS_OVERLAP:+:+:[6556],ZNF429->chr19:21679484-21739072:+,zinc_finger_protein_429,LINC00664->chr19:21666176-21686040:+,long_intergenic_non-protein_coding_RNA_664	TT_OESOPHAGUS	0.38	0.95	0.2257	FALSE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	6	17	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.92	1	0.0753	0.2132	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TT_OESOPHAGUS	0.92	1	0.2885	FALSE	407	2205	196	549	0	FALSE	ACH-000561
TT_OESOPHAGUS	RP11-416O18.1--SOX2-OT	9	4	RP11-416O18.1	10636	chr3:181719155:+	SOX2-OT	57132	chr3:181554245:+	INCL_NON_REF_SPLICE	YES	49	0	0.21	1	0.1129	0.0502	RP11-416O18.1->chr3:181670131-181728466:+,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	TT_OESOPHAGUS	0.21	1	0.1631	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	3	27	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	22765	725	0	0.04	0.0376	0.3386	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	0.04	0.3762	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	FDPS--DCST1	1	34	FDPS	3847	chr1:155282186:+	DCST1	13570	chr1:155011879:+	ONLY_REF_SPLICE	NO	660	7	0.05	0.83	0.0125	0.4264	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,DCST1->DC-STAMP_domain_containing_1,chr1:155006300-155023406:+	TT_OESOPHAGUS	0.05	0.83	0.4389	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	3	26	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	23389	0	0	1	0.0376	0.3261	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	1	0.3637	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	RALB--STEAP3	6	13	RALB	4200	chr2:121036354:+	STEAP3	17878	chr2:120003065:+	ONLY_REF_SPLICE	YES	1794	92	0.01	0.17	0.0753	0.163	RALB->Oncogene{Bushman},chr2:120997640-121052289:+,v-ral_simian_leukemia_viral_oncogene_homolog_B,STEAP3->STEAP3_metalloreductase,chr2:119981384-120023228:+	TT_OESOPHAGUS	0.01	0.17	0.2383	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ND4L	4	20	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	11068	1	0	0.96	0.0502	0.2508	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_OESOPHAGUS	0	0.96	0.301	FALSE	344	827	44	306	0	FALSE	ACH-000561
TT_OESOPHAGUS	NEMF--SOS2	6	12	NEMF	18819	chr14:50280706:-	SOS2	59404	chr14:50600957:-	ONLY_REF_SPLICE	YES	127	38	0.12	0.32	0.0753	0.1505	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-	TT_OESOPHAGUS	0.12	0.32	0.2258	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	C15orf57--CBX3	4	19	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	93	63	0.2	0.27	0.0502	0.2383	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TT_OESOPHAGUS	0.2	0.27	0.2885	TRUE	267	562	48	632	0	FALSE	ACH-000561
TT_OESOPHAGUS	LINC00511--SLC39A11	6	10	LINC00511	8867	chr17:70588342:-	SLC39A11	49102	chr17:70732858:-	ONLY_REF_SPLICE	YES	24	118	0.4	0.12	0.0753	0.1254	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	TT_OESOPHAGUS	0.12	0.4	0.2007	TRUE	0	5	0	7	4	TRUE	ACH-000561
TT_OESOPHAGUS	RP11-123O10.4--GRIP1	8	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1003	0.0251	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TT_OESOPHAGUS	1	1	0.1254	FALSE	416	2512	207	587	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	3	21	MT-ND4	1754	chrM:11513:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	23389	110	0	0.18	0.0376	0.2634	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	0.18	0.301	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ATP6--MT-CO2	6	8	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	59	4	0.19	0.78	0.0753	0.1003	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TT_OESOPHAGUS	0.19	0.78	0.1756	FALSE	59	21	0	114	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ATP6--MT-CO2	7	4	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	41	5	0.21	0.69	0.0878	0.0502	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TT_OESOPHAGUS	0.21	0.69	0.138	FALSE	59	21	0	114	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-TA--MT-TC	6	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0753	0.1003	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TT_OESOPHAGUS	1	1	0.1756	FALSE	462	80	0	856	0	FALSE	ACH-000561
TT_OESOPHAGUS	RP11-680G10.1--GSE1	6	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	26	1	0.35	0.0753	0.1003	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TT_OESOPHAGUS	0.35	1	0.1756	TRUE	458	1351	185	561	0	FALSE	ACH-000561
TT_OESOPHAGUS	C11orf80--PACS1	7	3	C11orf80	4815	chr11:66526567:+	PACS1	29113	chr11:65960957:+	ONLY_REF_SPLICE	YES	163	37	0.06	0.21	0.0878	0.0376	C11orf80->chr11:66511922-66610987:+,chromosome_11_open_reading_frame_80,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	TT_OESOPHAGUS	0.06	0.21	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	LMTK2--ARPC1B	5	11	LMTK2	1390	chr7:97736586:+	ARPC1B	30792	chr7:98983325:+	INCL_NON_REF_SPLICE	YES	11	99	0.59	0.14	0.0627	0.138	LMTK2->chr7:97736197-97838945:+,lemur_tyrosine_kinase_2,ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+	TT_OESOPHAGUS	0.14	0.59	0.2007	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	RP11-6N13.1--CTD-2374C24.1	7	3	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0878	0.0376	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	TT_OESOPHAGUS	0.91	1	0.1254	TRUE	5	4	0	46	0	FALSE	ACH-000561
TT_OESOPHAGUS	RALB--STEAP3	3	18	RALB	6482	chr2:121043658:+	STEAP3	17878	chr2:120003065:+	ONLY_REF_SPLICE	YES	1559	92	0.01	0.19	0.0376	0.2258	RALB->Oncogene{Bushman},chr2:120997640-121052289:+,v-ral_simian_leukemia_viral_oncogene_homolog_B,STEAP3->STEAP3_metalloreductase,chr2:119981384-120023228:+	TT_OESOPHAGUS	0.01	0.19	0.2634	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	AP000525.9--LA16c-60G3.6	7	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	45	0	0.15	1	0.0878	0.0125	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	TT_OESOPHAGUS	0.15	1	0.1003	TRUE	0	42	0	133	42	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	3	17	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	28217	195	0	0.09	0.0376	0.2132	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	0.09	0.2508	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	LMTK2--ARPC1B	3	16	LMTK2	1396	chr7:97736592:+	ARPC1B	28551	chr7:98974961:+	ONLY_REF_SPLICE	YES	11	33	0.63	0.37	0.0376	0.2007	LMTK2->chr7:97736197-97838945:+,lemur_tyrosine_kinase_2,ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+	TT_OESOPHAGUS	0.37	0.63	0.2383	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	SETD1A--SRCAP	6	4	SETD1A	14667	chr16:30992085:+	SRCAP	49357	chr16:30753130:+	INCL_NON_REF_SPLICE	YES	57	252	0.15	0.04	0.0753	0.0502	SETD1A->SET_domain_containing_1A,chr16:30968615-30996437:+,SRCAP->Snf2-related_CREBBP_activator_protein,chr16:30709530-30755602:+	TT_OESOPHAGUS	0.04	0.15	0.1255	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	CEP135--PAICS	6	3	CEP135	6714	chr4:56825932:+	PAICS	36444	chr4:57307829:+	ONLY_REF_SPLICE	YES	6	138	0.6	0.06	0.0753	0.0376	CEP135->centrosomal_protein_135,chr4:56815037-56899529:+,PAICS->chr4:57301907-57327534:+,phosphoribosylaminoimidazole_carboxylase;_phosphoribosylaminoimidazolesuccinocarboxamide_synthase	TT_OESOPHAGUS	0.06	0.6	0.1129	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	MT-ATP6--MT-CO2	3	15	MT-ATP6	1408	chrM:8934:+	MT-CO2	4720	chrM:7624:+	INCL_NON_REF_SPLICE	NO	79	0	0.19	1	0.0376	0.1881	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TT_OESOPHAGUS	0.19	1	0.2257	FALSE	59	21	0	114	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	6	2	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	NO	16790	110	0	0.07	0.0753	0.0251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	0.07	0.1004	FALSE	231	204	14	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	3	14	MT-ND4	1458	chrM:11217:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	25570	110	0	0.13	0.0376	0.1756	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	0.13	0.2132	FALSE	231	217	16	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	6	2	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	19640	1661	0	0	0.0753	0.0251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	0	0.1004	FALSE	231	205	14	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	ZNF429--LINC00664	3	13	ZNF429	3709	chr19:21688882:+	LINC00664	23513	chr19:21672467:+	ONLY_REF_SPLICE	YES	24	1	0.4	0.94	0.0376	0.163	NEIGHBORS_OVERLAP:+:+:[6556],ZNF429->chr19:21679484-21739072:+,zinc_finger_protein_429,LINC00664->chr19:21666176-21686040:+,long_intergenic_non-protein_coding_RNA_664	TT_OESOPHAGUS	0.4	0.94	0.2006	FALSE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	ZNF429--LINC00664	3	13	ZNF429	3403	chr19:21688576:+	LINC00664	22367	chr19:21671113:+	ONLY_REF_SPLICE	YES	30	0	0.35	1	0.0376	0.163	NEIGHBORS_OVERLAP:+:+:[6556],ZNF429->chr19:21679484-21739072:+,zinc_finger_protein_429,LINC00664->chr19:21666176-21686040:+,long_intergenic_non-protein_coding_RNA_664	TT_OESOPHAGUS	0.35	1	0.2006	FALSE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	ZNF429--LINC00664	2	16	ZNF429	3709	chr19:21688882:+	LINC00664	22367	chr19:21671113:+	ONLY_REF_SPLICE	YES	24	0	0.43	1	0.0251	0.2007	NEIGHBORS_OVERLAP:+:+:[6556],ZNF429->chr19:21679484-21739072:+,zinc_finger_protein_429,LINC00664->chr19:21666176-21686040:+,long_intergenic_non-protein_coding_RNA_664	TT_OESOPHAGUS	0.43	1	0.2258	FALSE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	MIR205HG--C9orf3	5	2	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	436	817	0.02	0.01	0.0627	0.0251	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	TT_OESOPHAGUS	0.01	0.02	0.0878	FALSE	86	303	14	25	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ATP6--MT-CO2	4	6	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	57	5	0.15	0.67	0.0502	0.0753	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TT_OESOPHAGUS	0.15	0.67	0.1255	FALSE	59	21	0	114	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	5	2	MT-ND4	1245	chrM:11004:+	MT-ATP8	5477	chrM:8464:+	INCL_NON_REF_SPLICE	YES	17342	4	0	0.64	0.0627	0.0251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	0.64	0.0878	FALSE	231	204	14	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	CROT--PILRA	4	5	CROT	13120	chr7:87011859:+	PILRA	25758	chr7:99987511:+	ONLY_REF_SPLICE	YES	72	1	0.11	0.9	0.0502	0.0627	CROT->carnitine_O-octanoyltransferase,chr7:86974997-87029111:+,PILRA->chr7:99965153-99997719:+,paired_immunoglobin_like_type_2_receptor_alpha	TT_OESOPHAGUS	0.11	0.9	0.1129	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	1	17	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0125	0.2132	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TT_OESOPHAGUS	1	1	0.2257	FALSE	192	492	57	212	0	FALSE	ACH-000561
TT_OESOPHAGUS	FDPS--DCST1	1	16	FDPS	5512	chr1:155287812:+	DCST1	15564	chr1:155013873:+	ONLY_REF_SPLICE	YES	553	57	0.03	0.23	0.0125	0.2007	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,DCST1->DC-STAMP_domain_containing_1,chr1:155006300-155023406:+	TT_OESOPHAGUS	0.03	0.23	0.2132	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	LMTK2--ARPC1B	1	16	LMTK2	1396	chr7:97736592:+	ARPC1B	28547	chr7:98974957:+	ONLY_REF_SPLICE	NO	11	33	0.61	0.34	0.0125	0.2007	LMTK2->chr7:97736197-97838945:+,lemur_tyrosine_kinase_2,ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+	TT_OESOPHAGUS	0.34	0.61	0.2132	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	MT-ATP6--MT-CO2	4	4	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	44	5	0.15	0.62	0.0502	0.0502	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TT_OESOPHAGUS	0.15	0.62	0.1004	FALSE	59	21	0	114	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ATP6--MT-CO2	4	4	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	35	4	0.19	0.67	0.0502	0.0502	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TT_OESOPHAGUS	0.19	0.67	0.1004	FALSE	59	21	0	114	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ATP6--MT-CO2	4	4	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	35	4	0.19	0.67	0.0502	0.0502	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TT_OESOPHAGUS	0.19	0.67	0.1004	FALSE	59	21	0	114	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ND4L	3	8	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	121	0	0.08	1	0.0376	0.1003	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_OESOPHAGUS	0.08	1	0.1379	FALSE	344	826	44	306	0	FALSE	ACH-000561
TT_OESOPHAGUS	RP11-1L12.3--SLC5A12	4	4	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	9	0	0.47	1	0.0502	0.0502	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	TT_OESOPHAGUS	0.47	1	0.1004	TRUE	3	101	0	60	0	FALSE	ACH-000561
TT_OESOPHAGUS	TP63--MT-CO3	5	0	TP63	5659	chr3:189526217:+	MT-CO3	26831	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	TP63->chr3:189349205-189615068:+,tumor_protein_p63,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TT_OESOPHAGUS	1	1	0.0627	FALSE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	ASXL2--PDIA6	2	11	ASXL2	2434	chr2:26068350:-	PDIA6	35042	chr2:10961645:-	ONLY_REF_SPLICE	YES	36	0	0.27	1	0.0251	0.138	ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,PDIA6->chr2:10923517-10978103:-,protein_disulfide_isomerase_family_A_member_6	TT_OESOPHAGUS	0.27	1	0.1631	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	CROT--PILRA	4	3	CROT	13120	chr7:87011859:+	PILRA	26977	chr7:99995502:+	ONLY_REF_SPLICE	YES	72	3	0.09	0.7	0.0502	0.0376	CROT->carnitine_O-octanoyltransferase,chr7:86974997-87029111:+,PILRA->chr7:99965153-99997719:+,paired_immunoglobin_like_type_2_receptor_alpha	TT_OESOPHAGUS	0.09	0.7	0.0878	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	HOXD11--NFE2L2	4	3	HOXD11	1411	chr2:176969354:+	NFE2L2	19035	chr2:178098999:-	ONLY_REF_SPLICE	YES	223	830	0.03	0.01	0.0502	0.0376	HOXD11->Oncogene{Bushman},chr2:176968944-176974722:+,homeobox_D11,NFE2L2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:178092323-178257425:-,nuclear_factor,_erythroid_2_like_2	TT_OESOPHAGUS	0.01	0.03	0.0878	FALSE	0	1	0	2	0	FALSE	ACH-000561
TT_OESOPHAGUS	LMTK2--ARPC1B	1	15	LMTK2	1396	chr7:97736592:+	ARPC1B	28571	chr7:98974981:+	ONLY_REF_SPLICE	YES	11	33	0.59	0.33	0.0125	0.1881	LMTK2->chr7:97736197-97838945:+,lemur_tyrosine_kinase_2,ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+	TT_OESOPHAGUS	0.33	0.59	0.2006	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	MT-ND5--MT-CO3	4	3	MT-ND5	2805	chrM:14141:+	MT-CO3	6211	chrM:9605:+	INCL_NON_REF_SPLICE	YES	0	23719	1	0	0.0502	0.0376	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TT_OESOPHAGUS	0	1	0.0878	FALSE	0	15	2	17	0	FALSE	ACH-000561
TT_OESOPHAGUS	PCAT1--RP11-382A18.2	4	3	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	5	0	0.58	1	0.0502	0.0376	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	TT_OESOPHAGUS	0.58	1	0.0878	TRUE	4	84	1	46	0	FALSE	ACH-000561
TT_OESOPHAGUS	RP11-120D5.1--MID1	4	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	9	35	0.44	0.17	0.0502	0.0376	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	TT_OESOPHAGUS	0.17	0.44	0.0878	FALSE	16	356	14	466	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	4	2	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	8959	0	0	1	0.0502	0.0251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	1	0.0753	FALSE	230	193	14	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND5--MT-CO3	4	2	MT-ND5	2591	chrM:13927:+	MT-CO3	6171	chrM:9565:+	INCL_NON_REF_SPLICE	YES	3536	24132	0	0	0.0502	0.0251	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TT_OESOPHAGUS	0	0	0.0753	FALSE	0	15	2	18	0	FALSE	ACH-000561
TT_OESOPHAGUS	RP4-565E6.1--HYDIN	4	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0502	0.0251	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	TT_OESOPHAGUS	0.86	1	0.0753	TRUE	456	1387	91	133	0	FALSE	ACH-000561
TT_OESOPHAGUS	CTD-2337A12.1--CAST	4	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	321	1	0.02	0.0502	0.0125	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	TT_OESOPHAGUS	0.02	1	0.0627	TRUE	347	1186	183	220	0	FALSE	ACH-000561
TT_OESOPHAGUS	FNIP1--THSD4	4	1	FNIP1	3450	chr5:131066597:-	THSD4	36419	chr15:71952869:+	ONLY_REF_SPLICE	YES	27	22	0.16	0.19	0.0502	0.0125	FNIP1->Oncogene{Bushman},chr5:130977407-131132710:-,folliculin_interacting_protein_1,THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4	TT_OESOPHAGUS	0.16	0.19	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	RALGPS2--NCSTN	3	5	RALGPS2	20903	chr1:178871346:+	NCSTN	31220	chr1:160314512:+	ONLY_REF_SPLICE	YES	97	60	0.08	0.12	0.0376	0.0627	RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+,NCSTN->chr1:160313062-160328742:+,nicastrin	TT_OESOPHAGUS	0.08	0.12	0.1003	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	1	13	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.0125	0.163	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TT_OESOPHAGUS	0.93	1	0.1755	FALSE	467	2173	244	435	0	FALSE	ACH-000561
TT_OESOPHAGUS	AC004549.6--MT-ATP8	4	0	AC004549.6	1219	chr7:27779796:-	MT-ATP8	5962	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0502	0	AC004549.6->chr7:27773014-27780014:-,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	1	1	0.0502	FALSE	0	1	0	3	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0502	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TT_OESOPHAGUS	1	1	0.0502	FALSE	462	80	0	856	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ATP6--MT-CO2	3	3	MT-ATP6	1138	chrM:8664:+	MT-CO2	4988	chrM:7892:+	INCL_NON_REF_SPLICE	YES	57	9	0.1	0.4	0.0376	0.0376	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TT_OESOPHAGUS	0.1	0.4	0.0752	FALSE	59	21	0	114	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	3	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	NO	16423	0	0	1	0.0376	0.0376	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	1	0.0752	FALSE	230	193	14	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	3	3	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	17386	0	0	1	0.0376	0.0376	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	1	0.0752	FALSE	231	204	14	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	3	2	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	18069	1778	0	0	0.0376	0.0251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	0	0.0627	FALSE	231	204	14	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	3	2	MT-ND4	1234	chrM:10993:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	17052	680	0	0.01	0.0376	0.0251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	0.01	0.0627	FALSE	231	204	14	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ATP8	3	2	MT-ND4	1224	chrM:10983:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	17337	195	0	0.03	0.0376	0.0251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TT_OESOPHAGUS	0	0.03	0.0627	FALSE	231	204	14	283	0	FALSE	ACH-000561
TT_OESOPHAGUS	TMEM38B--GDAP1	3	2	TMEM38B	8365	chr9:108510471:+	GDAP1	18557	chr8:75263509:+	ONLY_REF_SPLICE	YES	68	93	0.07	0.05	0.0376	0.0251	TMEM38B->chr9:108456825-108538893:+,transmembrane_protein_38B,GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1	TT_OESOPHAGUS	0.05	0.07	0.0627	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	CLDN10-AS1--EFNB2	2	5	CLDN10-AS1	2309	chr13:96180746:-	EFNB2	9168	chr13:107165160:-	ONLY_REF_SPLICE	YES	0	80	1	0.08	0.0251	0.0627	CLDN10-AS1->CLDN10_antisense_RNA_1,chr13:96131698-96186164:-,EFNB2->chr13:107142079-107187462:-,ephrin_B2	TT_OESOPHAGUS	0.08	1	0.0878	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	MT-ATP6--MT-CO2	3	1	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	43	6	0.09	0.4	0.0376	0.0125	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TT_OESOPHAGUS	0.09	0.4	0.0501	FALSE	59	21	0	114	0	FALSE	ACH-000561
TT_OESOPHAGUS	SERPINB7--SERPINB5	3	1	SERPINB7	3542	chr18:61445059:+	SERPINB5	16997	chr18:61151655:+	ONLY_REF_SPLICE	YES	6	81	0.4	0.05	0.0376	0.0125	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,SERPINB7->chr18:61420169-61472604:+,serpin_family_B_member_7,SERPINB5->Oncogene{Bushman},chr18:61143994-61172318:+,serpin_family_B_member_5	TT_OESOPHAGUS	0.05	0.4	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	MT-ND4--MT-ND4L	3	0	MT-ND4	1002	chrM:10761:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_OESOPHAGUS	1	1	0.0376	FALSE	344	821	44	306	0	FALSE	ACH-000561
TT_OESOPHAGUS	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TT_OESOPHAGUS	1	1	0.0376	TRUE	0	0	0	434	0	FALSE	ACH-000561
TT_OESOPHAGUS	RPL3--KRT17	3	0	RPL3	3847	chr22:39713548:-	KRT17	11639	chr17:39780814:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	GTEx&tcga_normals:2/3694=0.05%,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3,KRT17->chr17:39775689-39781094:-,keratin_17	TT_OESOPHAGUS	1	1	0.0376	TRUE	0	0	0	2	0	TRUE	ACH-000561
TT_OESOPHAGUS	SBF2-AS1--ZNF143	3	0	SBF2-AS1	9012	chr11:9829493:+	ZNF143	25629	chr11:9516193:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	SBF2-AS1->SBF2_antisense_RNA_1,chr11:9779839-9832866:+,ZNF143->chr11:9481866-9550071:+,zinc_finger_protein_143	TT_OESOPHAGUS	1	1	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0251	0.0251	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TT_OESOPHAGUS	0.5	1	0.0502	FALSE	125	705	46	456	0	FALSE	ACH-000561
TT_OESOPHAGUS	TIMM23B--LINC00843	2	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0251	0.0251	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TT_OESOPHAGUS	0.8	1	0.0502	TRUE	62	24	1	171	0	FALSE	ACH-000561
TT_OESOPHAGUS	ANKRD36C--FBXW9	2	1	ANKRD36C	9637	chr2:96624339:-	FBXW9	70870	chr19:12802268:-	ONLY_REF_SPLICE	YES	5	37	0.38	0.07	0.0251	0.0125	ANKRD36C->ankyrin_repeat_domain_36C,chr2:96514587-96657541:-,FBXW9->F-box_and_WD_repeat_domain_containing_9,chr19:12798867-12807457:-	TT_OESOPHAGUS	0.07	0.38	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	BTBD11--RP11-642P15.1	2	1	BTBD11	2663	chr12:107713852:+	RP11-642P15.1	39085	chr12:104287174:-	ONLY_REF_SPLICE	YES	7	1	0.3	0.75	0.0251	0.0125	BTBD11->BTB_domain_containing_11,chr12:107712190-108053419:+,RP11-642P15.1->chr12:104237527-104323989:-	TT_OESOPHAGUS	0.3	0.75	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	NCKAP1--AC064871.3	2	1	NCKAP1	1867	chr2:183902720:-	AC064871.3	52908	chr2:183972431:-	ONLY_REF_SPLICE	YES	393	0	0.01	1	0.0251	0.0125	LOCAL_REARRANGEMENT:-:[44547],NCKAP1->NCK_associated_protein_1,chr2:183773843-183903586:-,AC064871.3->chr2:183948133-183973247:-	TT_OESOPHAGUS	0.01	1	0.0376	FALSE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	PICALM--RP11-12D16.2	2	1	PICALM	23636	chr11:85685751:-	RP11-12D16.2	30685	chr11:85903956:-	ONLY_REF_SPLICE	YES	238	0	0.01	1	0.0251	0.0125	PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,RP11-12D16.2->chr11:85903829-85904524:-	TT_OESOPHAGUS	0.01	1	0.0376	FALSE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	RB1--ITM2B	2	1	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	46	826	0.06	0	0.0251	0.0125	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	TT_OESOPHAGUS	0	0.06	0.0376	FALSE	53	73	8	19	0	FALSE	ACH-000561
TT_OESOPHAGUS	SMARCC1--MAP4	2	1	SMARCC1	2624	chr3:47814307:-	MAP4	62312	chr3:47919013:-	ONLY_REF_SPLICE	YES	89	107	0.03	0.03	0.0251	0.0125	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[68586],SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	TT_OESOPHAGUS	0.03	0.03	0.0376	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	C1orf63--EIF4G3	2	0	C1orf63	8720	chr1:25594231:-	EIF4G3	25991	chr1:21415706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	TT_OESOPHAGUS	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	COPA--ANGPTL1	1	4	COPA	8651	chr1:160293221:-	ANGPTL1	32499	chr1:178838358:-	ONLY_REF_SPLICE	YES	257	2	0.02	0.71	0.0125	0.0502	COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha,ANGPTL1->angiopoietin_like_1,chr1:178818840-178840187:-	TT_OESOPHAGUS	0.02	0.71	0.0627	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	1	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	8	2	0.38	0.71	0.0125	0.0502	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	TT_OESOPHAGUS	0.38	0.71	0.0627	FALSE	33	240	4	98	0	FALSE	ACH-000561
TT_OESOPHAGUS	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TT_OESOPHAGUS	1	1	0.0251	FALSE	292	1546	117	613	0	FALSE	ACH-000561
TT_OESOPHAGUS	PPFIBP1--RP11-108K3.1	2	0	PPFIBP1	1935	chr12:27677298:+	RP11-108K3.1	43034	chr15:51570180:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,RP11-108K3.1->chr15:51329685-51586109:+	TT_OESOPHAGUS	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	PRIM2--OLFML3	2	0	PRIM2	8956	chr6:57246966:+	OLFML3	26292	chr1:114522954:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2,OLFML3->chr1:114522063-114524876:+,olfactomedin_like_3	TT_OESOPHAGUS	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	RP11-1379J22.5--UBE2D2	2	0	RP11-1379J22.5	1720	chr5:179085482:+	UBE2D2	10384	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	RP11-1379J22.5->chr5:179084763-179091433:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	TT_OESOPHAGUS	1	1	0.0251	TRUE	0	5	0	5	2	TRUE	ACH-000561
TT_OESOPHAGUS	SLC35E2B--UBE2D2	2	0	SLC35E2B	9194	chr1:1599766:-	UBE2D2	21139	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	SLC35E2B->chr1:1592939-1624167:-,solute_carrier_family_35_member_E2B,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	TT_OESOPHAGUS	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	TFAP2E--ZER1	2	0	TFAP2E	2631	chr1:36040601:+	ZER1	17921	chr9:131505024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	TFAP2E->chr1:36038971-36060929:+,transcription_factor_AP-2_epsilon,ZER1->chr9:131492065-131534693:-,zyg-11_related_cell_cycle_regulator	TT_OESOPHAGUS	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	TPCN2--CCND1	2	0	TPCN2	3530	chr11:68822820:+	CCND1	26801	chr11:69457799:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	TT_OESOPHAGUS	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	DARS--KCNMA1	1	3	DARS	1698	chr2:136742973:-	KCNMA1	44936	chr10:78787649:-	ONLY_REF_SPLICE	YES	508	0	0.01	1	0.0125	0.0376	DARS->aspartyl-tRNA_synthetase,chr2:136664247-136743670:-,KCNMA1->chr10:78629359-79398353:-,potassium_calcium-activated_channel_subfamily_M_alpha_1	TT_OESOPHAGUS	0.01	1	0.0501	FALSE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	RP11-120D5.1--MID1	1	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	9	7	0.31	0.36	0.0125	0.0376	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	TT_OESOPHAGUS	0.31	0.36	0.0501	FALSE	0	5	0	14	0	FALSE	ACH-000561
TT_OESOPHAGUS	RP11-120D5.1--MID1	1	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	9	35	0.31	0.1	0.0125	0.0376	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	TT_OESOPHAGUS	0.1	0.31	0.0501	FALSE	0	48	1	163	0	FALSE	ACH-000561
TT_OESOPHAGUS	RP11-6N13.1--CTD-2374C24.1	1	3	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0125	0.0376	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	TT_OESOPHAGUS	0.8	1	0.0501	TRUE	5	12	0	42	0	FALSE	ACH-000561
TT_OESOPHAGUS	CASZ1--MTOR	1	2	CASZ1	6230	chr1:10753931:-	MTOR	79594	chr1:11177143:-	ONLY_REF_SPLICE	YES	91	92	0.03	0.03	0.0125	0.0251	CASZ1->castor_zinc_finger_1,chr1:10696661-10856707:-,MTOR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:11166592-11322564:-,mechanistic_target_of_rapamycin	TT_OESOPHAGUS	0.03	0.03	0.0376	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	CASZ1--MTOR	1	2	CASZ1	6230	chr1:10753931:-	MTOR	80872	chr1:11175525:-	ONLY_REF_SPLICE	YES	91	94	0.03	0.03	0.0125	0.0251	CASZ1->castor_zinc_finger_1,chr1:10696661-10856707:-,MTOR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:11166592-11322564:-,mechanistic_target_of_rapamycin	TT_OESOPHAGUS	0.03	0.03	0.0376	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	CCNT2--AC079305.11	1	2	CCNT2	6381	chr2:135700244:+	AC079305.11	24443	chr2:177858672:-	ONLY_REF_SPLICE	YES	119	0	0.02	1	0.0125	0.0251	CCNT2->chr2:135675805-135716912:+,cyclin_T2,AC079305.11->chr2:177855236-178029244:-	TT_OESOPHAGUS	0.02	1	0.0376	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	CD44--PDHX	1	2	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	1095	221	0	0.01	0.0125	0.0251	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	TT_OESOPHAGUS	0	0.01	0.0376	FALSE	0	20	0	35	2	FALSE	ACH-000561
TT_OESOPHAGUS	CEP135--PAICS	1	2	CEP135	5629	chr4:56823530:+	PAICS	36444	chr4:57307829:+	ONLY_REF_SPLICE	YES	13	138	0.19	0.02	0.0125	0.0251	CEP135->centrosomal_protein_135,chr4:56815037-56899529:+,PAICS->chr4:57301907-57327534:+,phosphoribosylaminoimidazole_carboxylase;_phosphoribosylaminoimidazolesuccinocarboxamide_synthase	TT_OESOPHAGUS	0.02	0.19	0.0376	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	COPA--ANGPTL1	1	2	COPA	8651	chr1:160293221:-	ANGPTL1	35458	chr1:178822922:-	ONLY_REF_SPLICE	NO	257	9	0.01	0.25	0.0125	0.0251	COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha,ANGPTL1->angiopoietin_like_1,chr1:178818840-178840187:-	TT_OESOPHAGUS	0.01	0.25	0.0376	FALSE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	PRKCH--HIF1A	1	2	PRKCH	27174	chr14:61952374:+	HIF1A	45882	chr14:62187100:+	ONLY_REF_SPLICE	YES	303	1118	0.01	0	0.0125	0.0251	PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	TT_OESOPHAGUS	0	0.01	0.0376	FALSE	0	3	0	5	0	FALSE	ACH-000561
TT_OESOPHAGUS	SBNO2--TPGS1	1	2	SBNO2	5837	chr19:1149368:-	TPGS1	32173	chr19:518889:+	ONLY_REF_SPLICE	NO	126	53	0.02	0.05	0.0125	0.0251	NUCLCLUST,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),TPGS1->chr19:507299-519654:+,tubulin_polyglutamylase_complex_subunit_1	TT_OESOPHAGUS	0.02	0.05	0.0376	TRUE	0	3	0	1	1	FALSE	ACH-000561
TT_OESOPHAGUS	ANKRD36C--FBXW9	1	1	ANKRD36C	50950	chr2:96549921:-	FBXW9	70870	chr19:12802268:-	ONLY_REF_SPLICE	NO	14	37	0.12	0.05	0.0125	0.0125	ANKRD36C->ankyrin_repeat_domain_36C,chr2:96514587-96657541:-,FBXW9->F-box_and_WD_repeat_domain_containing_9,chr19:12798867-12807457:-	TT_OESOPHAGUS	0.05	0.12	0.025	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	ANKRD36C--FBXW9	1	1	ANKRD36C	26603	chr2:96583603:-	FBXW9	70870	chr19:12802268:-	ONLY_REF_SPLICE	NO	1	37	0.67	0.05	0.0125	0.0125	ANKRD36C->ankyrin_repeat_domain_36C,chr2:96514587-96657541:-,FBXW9->F-box_and_WD_repeat_domain_containing_9,chr19:12798867-12807457:-	TT_OESOPHAGUS	0.05	0.67	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	ANKRD36C--FBXW9	1	1	ANKRD36C	10668	chr2:96622534:-	FBXW9	70870	chr19:12802268:-	ONLY_REF_SPLICE	YES	3	37	0.4	0.05	0.0125	0.0125	ANKRD36C->ankyrin_repeat_domain_36C,chr2:96514587-96657541:-,FBXW9->F-box_and_WD_repeat_domain_containing_9,chr19:12798867-12807457:-	TT_OESOPHAGUS	0.05	0.4	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	ANKRD36C--FBXW9	1	1	ANKRD36C	25415	chr2:96587355:-	FBXW9	70870	chr19:12802268:-	ONLY_REF_SPLICE	NO	1	37	0.67	0.05	0.0125	0.0125	ANKRD36C->ankyrin_repeat_domain_36C,chr2:96514587-96657541:-,FBXW9->F-box_and_WD_repeat_domain_containing_9,chr19:12798867-12807457:-	TT_OESOPHAGUS	0.05	0.67	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	BTBD11--RP11-642P15.1	1	1	BTBD11	2663	chr12:107713852:+	RP11-642P15.1	41671	chr12:104283418:-	ONLY_REF_SPLICE	NO	7	1	0.22	0.67	0.0125	0.0125	BTBD11->BTB_domain_containing_11,chr12:107712190-108053419:+,RP11-642P15.1->chr12:104237527-104323989:-	TT_OESOPHAGUS	0.22	0.67	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	DARS--KCNMA1	1	1	DARS	4970	chr2:136736844:-	KCNMA1	55983	chr10:78729825:-	ONLY_REF_SPLICE	YES	866	1	0	0.67	0.0125	0.0125	DARS->aspartyl-tRNA_synthetase,chr2:136664247-136743670:-,KCNMA1->chr10:78629359-79398353:-,potassium_calcium-activated_channel_subfamily_M_alpha_1	TT_OESOPHAGUS	0	0.67	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	EHBP1--AC008067.2	1	1	EHBP1	10472	chr2:63058293:+	AC008067.2	46810	chr2:80802410:-	ONLY_REF_SPLICE	NO	45	0	0.04	1	0.0125	0.0125	EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,AC008067.2->chr2:80802238-80845902:-	TT_OESOPHAGUS	0.04	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	FGFR1OP2--ASUN	1	1	FGFR1OP2	1328	chr12:27091643:+	ASUN	19473	chr12:27081838:-	ONLY_REF_SPLICE	YES	517	177	0	0.01	0.0125	0.0125	LOCAL_INVERSION:+:-:[57],FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	TT_OESOPHAGUS	0	0.01	0.025	FALSE	0	2	0	3	0	FALSE	ACH-000561
TT_OESOPHAGUS	FKBP5--DLGAP1	1	1	FKBP5	18286	chr6:35547813:-	DLGAP1	50231	chr18:3680212:-	ONLY_REF_SPLICE	YES	24	3	0.08	0.4	0.0125	0.0125	FKBP5->FK506_binding_protein_5,chr6:35541362-35696360:-,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	TT_OESOPHAGUS	0.08	0.4	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	FKBP5--DLGAP1	1	1	FKBP5	11288	chr6:35554811:-	DLGAP1	50231	chr18:3680212:-	ONLY_REF_SPLICE	YES	12	3	0.14	0.4	0.0125	0.0125	FKBP5->FK506_binding_protein_5,chr6:35541362-35696360:-,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	TT_OESOPHAGUS	0.14	0.4	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000561
TT_OESOPHAGUS	HIF1A--PRKCH	1	1	HIF1A	8333	chr14:62194373:+	PRKCH	53789	chr14:61995793:+	ONLY_REF_SPLICE	YES	790	271	0	0.01	0.0125	0.0125	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	TT_OESOPHAGUS	0	0.01	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	HIF1A--RP11-47I22.3	1	1	HIF1A	16310	chr14:62211531:+	RP11-47I22.3	25003	chr14:62117680:+	ONLY_REF_SPLICE	YES	1286	13	0	0.13	0.0125	0.0125	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	TT_OESOPHAGUS	0	0.13	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	HIF1A--RP11-47I22.3	1	1	HIF1A	17314	chr14:62212535:+	RP11-47I22.3	25003	chr14:62117680:+	ONLY_REF_SPLICE	YES	1153	13	0	0.13	0.0125	0.0125	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	TT_OESOPHAGUS	0	0.13	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	MZT1--KLF12	1	1	MZT1	1164	chr13:73301662:-	KLF12	11743	chr13:74420510:-	ONLY_REF_SPLICE	YES	79	15	0.02	0.12	0.0125	0.0125	MZT1->chr13:73282495-73301825:-,mitotic_spindle_organizing_protein_1,KLF12->Kruppel-like_factor_12,chr13:74260226-74708394:-	TT_OESOPHAGUS	0.02	0.12	0.025	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	PARD3--CUL2	1	1	PARD3	1450	chr10:35103804:-	CUL2	40065	chr10:35360267:-	ONLY_REF_SPLICE	YES	159	191	0.01	0.01	0.0125	0.0125	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,CUL2->chr10:35297479-35379570:-,cullin_2	TT_OESOPHAGUS	0.01	0.01	0.025	FALSE	0	1	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	RB1--ITM2B	1	1	RB1	17872	chr13:48955579:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	146	826	0.01	0	0.0125	0.0125	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	TT_OESOPHAGUS	0	0.01	0.025	FALSE	27	49	8	8	0	FALSE	ACH-000561
TT_OESOPHAGUS	RP11-227G15.3--UTP6	1	1	RP11-227G15.3	3319	chr17:30678931:+	UTP6	24360	chr17:30200772:-	ONLY_REF_SPLICE	YES	778	199	0	0.01	0.0125	0.0125	RP11-227G15.3->chr17:30651450-30687719:+,UTP6->UTP6,_small_subunit_processome_component,chr17:30187923-30228784:-	TT_OESOPHAGUS	0	0.01	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	SERPINB7--SERPINB5	1	1	SERPINB7	2493	chr18:61442950:+	SERPINB5	16997	chr18:61151655:+	ONLY_REF_SPLICE	NO	5	81	0.29	0.02	0.0125	0.0125	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,SERPINB7->chr18:61420169-61472604:+,serpin_family_B_member_7,SERPINB5->Oncogene{Bushman},chr18:61143994-61172318:+,serpin_family_B_member_5	TT_OESOPHAGUS	0.02	0.29	0.025	TRUE	0	0	0	1	0	FALSE	ACH-000561
TT_OESOPHAGUS	TP63--TPRG1	1	1	TP63	4502	chr3:189507631:+	TPRG1	55724	chr3:189038415:+	ONLY_REF_SPLICE	NO	1156	876	0	0	0.0125	0.0125	TP63->chr3:189349205-189615068:+,tumor_protein_p63,TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1	TT_OESOPHAGUS	0	0	0.025	FALSE	0	4	0	3	0	FALSE	ACH-000561
TT_OESOPHAGUS	TP63--TPRG1	1	1	TP63	4502	chr3:189507631:+	TPRG1	52247	chr3:189028175:+	ONLY_REF_SPLICE	YES	1156	798	0	0	0.0125	0.0125	TP63->chr3:189349205-189615068:+,tumor_protein_p63,TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1	TT_OESOPHAGUS	0	0	0.025	FALSE	0	5	0	1	0	FALSE	ACH-000561
SNU601_STOMACH	TIMM23B--LINC00843	142	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.4154	0.2691	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU601_STOMACH	0.99	1	1.6845	TRUE	508	994	45	981	0	FALSE	ACH-000736
SNU601_STOMACH	TIMM23--RP11-464F9.1	86	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	249	5	0.26	0.95	0.8572	0.0199	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU601_STOMACH	0.26	0.95	0.8771	TRUE	519	3926	326	965	0	FALSE	ACH-000736
SNU601_STOMACH	MT-TA--MT-TC	55	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5482	0.0598	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU601_STOMACH	1	1	0.608	FALSE	462	80	0	856	0	FALSE	ACH-000736
SNU601_STOMACH	CREBL2--RP11-392P7.6	50	14	CREBL2	1361	chr12:12765121:+	RP11-392P7.6	20596	chr12:13132458:+	ONLY_REF_SPLICE	YES	13	7	0.83	0.9	0.4984	0.1395	CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+,RP11-392P7.6->chr12:13080660-13137579:+	SNU601_STOMACH	0.83	0.9	0.6379	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	MT-ND4--MT-ND4L	3	189	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	26	0	0.88	1	0.0299	1.8838	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU601_STOMACH	0.88	1	1.9137	FALSE	344	827	44	306	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND4--MT-ND4L	3	187	MT-ND4	1159	chrM:10918:+	MT-ND4L	5503	chrM:10594:+	INCL_NON_REF_SPLICE	YES	13	0	0.94	1	0.0299	1.8639	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU601_STOMACH	0.94	1	1.8938	FALSE	344	826	44	306	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND4--MT-ND4L	3	187	MT-ND4	1299	chrM:11058:+	MT-ND4L	5462	chrM:10553:+	INCL_NON_REF_SPLICE	YES	52	0	0.79	1	0.0299	1.8639	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU601_STOMACH	0.79	1	1.8938	FALSE	344	827	44	306	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND4--MT-ND4L	9	131	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	1	0.98	0.99	0.0897	1.3057	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU601_STOMACH	0.98	0.99	1.3954	FALSE	344	821	44	306	0	FALSE	ACH-000736
SNU601_STOMACH	OR51S1--TP53I11	33	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3289	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU601_STOMACH	1	1	0.3289	TRUE	402	216	10	229	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND4--MT-ND4L	24	27	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	26	0	0.66	1	0.2392	0.2691	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU601_STOMACH	0.66	1	0.5083	FALSE	344	826	44	306	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND6--MT-TE	30	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.299	0.0299	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU601_STOMACH	0.97	1	0.3289	FALSE	499	1288	110	792	0	FALSE	ACH-000736
SNU601_STOMACH	SQSTM1--MAML1	29	6	SQSTM1	13391	chr5:179252226:+	MAML1	27336	chr5:179200896:+	ONLY_REF_SPLICE	YES	1066	61	0.03	0.36	0.2891	0.0598	LOCAL_REARRANGEMENT:+:[9876],SQSTM1->chr5:179233388-179265078:+,sequestosome_1,MAML1->chr5:179159851-179223512:+,mastermind_like_transcriptional_coactivator_1	SNU601_STOMACH	0.03	0.36	0.3489	TRUE	0	0	0	1	0	FALSE	ACH-000736
SNU601_STOMACH	HSP90AB1--MT-RNR2	25	5	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3503	0	0.01	1	0.2492	0.0498	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU601_STOMACH	0.01	1	0.299	FALSE	13	9	0	364	0	FALSE	ACH-000736
SNU601_STOMACH	RBM3--TBC1D25	22	7	RBM3	2219	chrX:48434055:+	TBC1D25	11241	chrX:48403257:+	ONLY_REF_SPLICE	YES	1159	15	0.02	0.66	0.2193	0.0698	LOCAL_REARRANGEMENT:+:[11840],RBM3->RNA_binding_motif_(RNP1,_RRM)_protein_3,chrX:48432837-48437454:+,TBC1D25->TBC1_domain_family_member_25,chrX:48397845-48420997:+	SNU601_STOMACH	0.02	0.66	0.2891	TRUE	0	0	0	1	0	FALSE	ACH-000736
SNU601_STOMACH	NIPA2--POLA1	23	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2293	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SNU601_STOMACH	1	1	0.2293	TRUE	46	1352	75	139	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND4--MT-ND4L	9	42	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	11144	0	0	1	0.0897	0.4186	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU601_STOMACH	0	1	0.5083	FALSE	328	800	43	304	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND4--MT-ND4L	4	59	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	4	0	0.94	1	0.0399	0.5881	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU601_STOMACH	0.94	1	0.628	FALSE	344	821	44	306	0	FALSE	ACH-000736
SNU601_STOMACH	HSP90AB1--MT-RNR2	17	5	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3548	0	0.01	1	0.1694	0.0498	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU601_STOMACH	0.01	1	0.2192	FALSE	13	9	0	364	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND6--MT-TE	17	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1694	0.0399	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU601_STOMACH	0.95	1	0.2093	FALSE	499	1288	110	792	0	FALSE	ACH-000736
SNU601_STOMACH	C15orf57--CBX3	14	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	28	55	0.5	0.34	0.1395	0.1395	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU601_STOMACH	0.34	0.5	0.279	TRUE	267	562	48	632	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND6--MT-TE	15	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.1495	0.0897	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU601_STOMACH	0.86	1	0.2392	FALSE	499	1288	110	792	0	FALSE	ACH-000736
SNU601_STOMACH	C15orf57--CBX3	13	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	27	56	0.48	0.31	0.1296	0.1196	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU601_STOMACH	0.31	0.48	0.2492	TRUE	267	562	48	632	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND4--MT-ND4L	9	28	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	317	0	0.1	1	0.0897	0.2791	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU601_STOMACH	0.1	1	0.3688	FALSE	344	827	44	306	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND4--MT-ND4L	8	28	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	7238	0	0	1	0.0797	0.2791	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU601_STOMACH	0	1	0.3588	FALSE	344	827	44	306	0	FALSE	ACH-000736
SNU601_STOMACH	HSPBP1--GRK5	14	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1395	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU601_STOMACH	1	1	0.1395	TRUE	1	39	0	134	39	FALSE	ACH-000736
SNU601_STOMACH	MT-TA--MT-TC	10	8	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0997	0.0797	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU601_STOMACH	1	1	0.1794	FALSE	462	80	0	856	0	FALSE	ACH-000736
SNU601_STOMACH	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1196	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU601_STOMACH	1	1	0.1196	TRUE	0	0	0	434	0	FALSE	ACH-000736
SNU601_STOMACH	TRAF3IP2-AS1--FABP7	11	4	TRAF3IP2-AS1	1155	chr6:111804868:+	FABP7	17142	chr6:123101436:+	ONLY_REF_SPLICE	YES	5	0	0.75	1	0.1096	0.0399	TRAF3IP2-AS1->TRAF3IP2_antisense_RNA_1,chr6:111804714-111919505:+,FABP7->chr6:123100620-123105219:+,fatty_acid_binding_protein_7	SNU601_STOMACH	0.75	1	0.1495	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	AP000525.9--LA16c-60G3.6	11	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1096	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SNU601_STOMACH	1	1	0.1096	TRUE	0	42	0	133	42	FALSE	ACH-000736
SNU601_STOMACH	MT-ND4--MT-ND4L	4	27	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	26	0	0.54	1	0.0399	0.2691	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU601_STOMACH	0.54	1	0.309	FALSE	344	826	44	306	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND4--MT-ND4L	3	28	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0299	0.2791	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU601_STOMACH	0.91	1	0.309	FALSE	344	821	44	306	0	FALSE	ACH-000736
SNU601_STOMACH	NRIP1--AF127936.7	10	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0997	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU601_STOMACH	1	1	0.0997	FALSE	292	1546	117	613	0	FALSE	ACH-000736
SNU601_STOMACH	SAMD5--SASH1	10	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0997	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SNU601_STOMACH	1	1	0.0997	TRUE	53	396	64	110	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND4--MT-ND4L	3	27	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	13	0	0.7	1	0.0299	0.2691	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU601_STOMACH	0.7	1	0.299	FALSE	344	826	44	306	0	FALSE	ACH-000736
SNU601_STOMACH	MXD3--SNTG2	9	3	MXD3	1997	chr5:176738762:-	SNTG2	41123	chr2:1371115:+	ONLY_REF_SPLICE	YES	43	0	0.22	1	0.0897	0.0299	MXD3->MAX_dimerization_protein_3,chr5:176728462-176739758:-,SNTG2->chr2:946554-1371385:+,syntrophin_gamma_2	SNU601_STOMACH	0.22	1	0.1196	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	CALM3--MT-ND4L	8	6	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2109	0	0.01	1	0.0797	0.0598	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU601_STOMACH	0.01	1	0.1395	FALSE	1	1	0	107	0	FALSE	ACH-000736
SNU601_STOMACH	CREBL2--RP11-392P7.6	5	18	CREBL2	1361	chr12:12765121:+	RP11-392P7.6	20013	chr12:13131875:+	ONLY_REF_SPLICE	YES	13	6	0.64	0.79	0.0498	0.1794	CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+,RP11-392P7.6->chr12:13080660-13137579:+	SNU601_STOMACH	0.64	0.79	0.2292	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	ADAP1--SUN1	7	3	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	245	417	0.04	0.02	0.0698	0.0299	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SNU601_STOMACH	0.02	0.04	0.0997	TRUE	16	22	0	27	0	FALSE	ACH-000736
SNU601_STOMACH	LMAN2--SNTG2	7	3	LMAN2	5644	chr5:176761285:-	SNTG2	38720	chr2:1371115:+	ONLY_REF_SPLICE	YES	741	0	0.01	1	0.0698	0.0299	LMAN2->chr5:176758563-176778853:-,lectin,_mannose_binding_2,SNTG2->chr2:946554-1371385:+,syntrophin_gamma_2	SNU601_STOMACH	0.01	1	0.0997	FALSE	0	0	0	1	0	FALSE	ACH-000736
SNU601_STOMACH	RP11-444D3.1--SOX5	7	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	2	1	0.83	0.0698	0.0299	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU601_STOMACH	0.83	1	0.0997	TRUE	477	1352	189	275	0	FALSE	ACH-000736
SNU601_STOMACH	MT-TA--MT-TC	5	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0498	0.0897	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU601_STOMACH	1	1	0.1395	FALSE	462	80	0	856	0	FALSE	ACH-000736
SNU601_STOMACH	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0698	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU601_STOMACH	1	1	0.0698	FALSE	462	80	0	856	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND4--MT-ND4L	3	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	49	0	0.25	1	0.0299	0.1296	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU601_STOMACH	0.25	1	0.1595	FALSE	344	827	44	306	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND6--MT-TE	3	13	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.8	1	0.0299	0.1296	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU601_STOMACH	0.8	1	0.1595	FALSE	499	1288	110	792	0	FALSE	ACH-000736
SNU601_STOMACH	NPM1P24--SET	6	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	38	1176	0.16	0.01	0.0598	0.01	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU601_STOMACH	0.01	0.16	0.0698	FALSE	0	0	0	434	0	FALSE	ACH-000736
SNU601_STOMACH	SLC1A5--MT-ND4L	6	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	784	0	0.01	1	0.0598	0.01	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU601_STOMACH	0.01	1	0.0698	FALSE	0	0	0	189	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ATP6--MT-CO1	6	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU601_STOMACH	1	1	0.0598	FALSE	183	104	9	328	0	FALSE	ACH-000736
SNU601_STOMACH	CREBL2--RP11-392P7.6	2	15	CREBL2	1361	chr12:12765121:+	RP11-392P7.6	20503	chr12:13132365:+	ONLY_REF_SPLICE	YES	13	6	0.57	0.74	0.0199	0.1495	CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+,RP11-392P7.6->chr12:13080660-13137579:+	SNU601_STOMACH	0.57	0.74	0.1694	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	FAM172A--KIAA0825	5	3	FAM172A	2315	chr5:93410351:-	KIAA0825	50323	chr5:93489829:-	ONLY_REF_SPLICE	YES	9	0	0.47	1	0.0498	0.0299	LOCAL_REARRANGEMENT:-:[41267],FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,KIAA0825->KIAA0825,chr5:93488671-93954309:-	SNU601_STOMACH	0.47	1	0.0797	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	MT-ND6--MT-TE	4	6	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0399	0.0598	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU601_STOMACH	0.83	1	0.0997	FALSE	499	1288	110	792	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ATP6--MT-CO1	4	5	MT-ATP6	1532	chrM:9058:+	MT-CO1	4964	chrM:6186:+	INCL_NON_REF_SPLICE	YES	4461	17449	0	0	0.0399	0.0498	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU601_STOMACH	0	0	0.0897	FALSE	183	102	9	328	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND4--MT-ND4L	5	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0498	0.01	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU601_STOMACH	0.86	1	0.0598	FALSE	344	821	44	306	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND6--MT-TE	3	9	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.75	1	0.0299	0.0897	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU601_STOMACH	0.75	1	0.1196	FALSE	499	1288	110	792	0	FALSE	ACH-000736
SNU601_STOMACH	NPM1P24--SET	5	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	38	1172	0.14	0.01	0.0498	0.01	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU601_STOMACH	0.01	0.14	0.0598	FALSE	0	0	0	434	0	FALSE	ACH-000736
SNU601_STOMACH	RBM3--TBC1D25	3	9	RBM3	2635	chrX:48434471:+	TBC1D25	11241	chrX:48403257:+	ONLY_REF_SPLICE	YES	1254	15	0.01	0.44	0.0299	0.0897	LOCAL_REARRANGEMENT:+:[11840],RBM3->RNA_binding_motif_(RNP1,_RRM)_protein_3,chrX:48432837-48437454:+,TBC1D25->TBC1_domain_family_member_25,chrX:48397845-48420997:+	SNU601_STOMACH	0.01	0.44	0.1196	TRUE	0	0	0	1	0	FALSE	ACH-000736
SNU601_STOMACH	C17orf76-AS1--PIGL	4	4	C17orf76-AS1	3309	chr17:16344444:+	PIGL	29773	chr17:16250859:+	ONLY_REF_SPLICE	YES	1716	7	0	0.53	0.0399	0.0399	LOCAL_REARRANGEMENT:+:[90021],C17orf76-AS1->chr17:16342136-16381992:+,PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L	SNU601_STOMACH	0	0.53	0.0798	FALSE	0	0	0	1	0	FALSE	ACH-000736
SNU601_STOMACH	MNT--METTL16	5	0	MNT	5622	chr17:2297337:-	METTL16	31211	chr17:2324198:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	LOCAL_REARRANGEMENT:-:[4444],MNT->MAX_network_transcriptional_repressor,chr17:2287354-2304412:-,METTL16->chr17:2308856-2415185:-,methyltransferase_like_16	SNU601_STOMACH	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	MT-ATP6--MT-CO1	5	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0498	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU601_STOMACH	1	1	0.0498	FALSE	183	104	9	328	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND4--MT-ND4L	5	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0498	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU601_STOMACH	1	1	0.0498	FALSE	344	821	44	306	0	FALSE	ACH-000736
SNU601_STOMACH	MT-TA--MT-TC	3	8	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0.0797	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU601_STOMACH	1	1	0.1096	FALSE	462	80	0	856	0	FALSE	ACH-000736
SNU601_STOMACH	MT-CO1--MT-RNR2	3	7	MT-CO1	1724	chrM:6627:+	MT-RNR2	6159	chrM:2287:+	INCL_NON_REF_SPLICE	YES	20932	12163	0	0	0.0299	0.0698	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU601_STOMACH	0	0	0.0997	FALSE	44	51	6	21	0	FALSE	ACH-000736
SNU601_STOMACH	EPHA2--ARHGEF19	3	6	EPHA2	13620	chr1:16455929:-	ARHGEF19	25038	chr1:16529069:-	ONLY_REF_SPLICE	YES	236	55	0.04	0.14	0.0299	0.0598	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[41767],EPHA2->EPH_receptor_A2,Oncogene{Bushman},chr1:16450832-16482582:-,ARHGEF19->Rho_guanine_nucleotide_exchange_factor_19,chr1:16524349-16539104:-	SNU601_STOMACH	0.04	0.14	0.0897	TRUE	0	1	0	1	0	FALSE	ACH-000736
SNU601_STOMACH	MT-CO1--MT-RNR2	3	5	MT-CO1	1635	chrM:6538:+	MT-RNR2	5554	chrM:1682:+	INCL_NON_REF_SPLICE	YES	20766	0	0	1	0.0299	0.0498	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU601_STOMACH	0	1	0.0797	FALSE	44	51	6	21	0	FALSE	ACH-000736
SNU601_STOMACH	ROCK2--NOL10	3	5	ROCK2	2753	chr2:11484122:-	NOL10	39234	chr2:10824738:-	ONLY_REF_SPLICE	YES	12	87	0.4	0.08	0.0299	0.0498	ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,NOL10->chr2:10710892-10830101:-,nucleolar_protein_10	SNU601_STOMACH	0.08	0.4	0.0797	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	MECOM--GNAS	4	0	MECOM	1283	chr3:169381124:-	GNAS	51411	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNU601_STOMACH	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	MT-ATP6--MT-CO1	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5226	chrM:6448:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU601_STOMACH	1	1	0.0399	FALSE	183	104	9	328	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ATP6--MT-CO1	4	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU601_STOMACH	1	1	0.0399	FALSE	183	104	9	328	0	FALSE	ACH-000736
SNU601_STOMACH	MT-CO1--MT-RNR2	3	4	MT-CO1	1625	chrM:6528:+	MT-RNR2	5573	chrM:1701:+	INCL_NON_REF_SPLICE	YES	19703	0	0	1	0.0299	0.0399	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU601_STOMACH	0	1	0.0698	FALSE	44	51	6	21	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU601_STOMACH	1	1	0.0399	FALSE	499	1288	110	792	0	FALSE	ACH-000736
SNU601_STOMACH	NAP1L4--CARS	3	2	NAP1L4	21034	chr11:2973010:-	CARS	31851	chr11:3063486:-	ONLY_REF_SPLICE	YES	261	72	0.02	0.06	0.0299	0.0199	LOCAL_REARRANGEMENT:-:[8545],NAP1L4->chr11:2965667-3013607:-,nucleosome_assembly_protein_1_like_4,CARS->Oncogene{Bushman},chr11:3022152-3078843:-,cysteinyl-tRNA_synthetase	SNU601_STOMACH	0.02	0.06	0.0498	TRUE	0	0	0	1	0	FALSE	ACH-000736
SNU601_STOMACH	ST14--APLP2	3	1	ST14	1499	chr11:130029955:+	APLP2	22856	chr11:129979324:+	ONLY_REF_SPLICE	YES	194	1790	0.02	0	0.0299	0.01	LOCAL_REARRANGEMENT:+:[14758],ST14->chr11:130029457-130080271:+,suppression_of_tumorigenicity_14,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	SNU601_STOMACH	0	0.02	0.0399	FALSE	0	2	0	3	1	FALSE	ACH-000736
SNU601_STOMACH	YWHAE--CRK	3	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	2607	168	0	0.02	0.0299	0.01	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SNU601_STOMACH	0	0.02	0.0399	FALSE	6	50	7	115	0	FALSE	ACH-000736
SNU601_STOMACH	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SNU601_STOMACH	1	1	0.0299	TRUE	0	8	0	10	8	TRUE	ACH-000736
SNU601_STOMACH	FAM208B--GDI2	3	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	SNU601_STOMACH	1	1	0.0299	TRUE	0	6	0	16	3	TRUE	ACH-000736
SNU601_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU601_STOMACH	1	1	0.0299	FALSE	183	104	9	328	0	FALSE	ACH-000736
SNU601_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU601_STOMACH	1	1	0.0299	FALSE	499	1288	110	792	0	FALSE	ACH-000736
SNU601_STOMACH	TMEM242--GLS	3	0	TMEM242	3035	chr6:157739814:-	GLS	32610	chr2:191818291:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	TMEM242->chr6:157710418-157744633:-,transmembrane_protein_242,GLS->chr2:191745553-191830278:+,glutaminase	SNU601_STOMACH	1	1	0.0299	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	WTAPP1--RUVBL1	3	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	SNU601_STOMACH	1	1	0.0299	TRUE	9	252	6	66	0	FALSE	ACH-000736
SNU601_STOMACH	ZMYND8--GNAS	3	0	ZMYND8	6534	chr20:45976600:-	GNAS	53879	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNU601_STOMACH	1	1	0.0299	TRUE	0	0	0	2	0	TRUE	ACH-000736
SNU601_STOMACH	ADAP1--SUN1	2	1	ADAP1	2012	chr7:994032:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	3	417	0.5	0.01	0.0199	0.01	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SNU601_STOMACH	0.01	0.5	0.0299	FALSE	0	0	0	3	0	FALSE	ACH-000736
SNU601_STOMACH	KCNQ1--CARS	2	1	KCNQ1	13357	chr11:2610084:+	CARS	36575	chr11:3041562:-	ONLY_REF_SPLICE	YES	190	193	0.02	0.02	0.0199	0.01	KCNQ1->chr11:2465914-2870339:+,potassium_voltage-gated_channel_subfamily_Q_member_1,CARS->Oncogene{Bushman},chr11:3022152-3078843:-,cysteinyl-tRNA_synthetase	SNU601_STOMACH	0.02	0.02	0.0299	TRUE	0	0	0	1	0	FALSE	ACH-000736
SNU601_STOMACH	TRAF3IP2-AS1--FABP7	1	5	TRAF3IP2-AS1	2351	chr6:111806064:+	FABP7	17142	chr6:123101436:+	ONLY_REF_SPLICE	YES	13	0	0.32	1	0.01	0.0498	TRAF3IP2-AS1->TRAF3IP2_antisense_RNA_1,chr6:111804714-111919505:+,FABP7->chr6:123100620-123105219:+,fatty_acid_binding_protein_7	SNU601_STOMACH	0.32	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	C17orf76-AS1--ABHD17C	2	0	C17orf76-AS1	1593	chr17:16342728:+	ABHD17C	19313	chr15:81041854:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	C17orf76-AS1->chr17:16342136-16381992:+,ABHD17C->abhydrolase_domain_containing_17C,chr15:80972025-81047962:+	SNU601_STOMACH	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	CDK6--PRPF39	2	0	CDK6	1117	chr7:92465792:-	PRPF39	33821	chr14:45581521:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	CDK6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:92234235-92465908:-,cyclin-dependent_kinase_6,PRPF39->chr14:45553302-45585485:+,pre-mRNA_processing_factor_39	SNU601_STOMACH	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	HNRNPM--ELAVL1	2	0	HNRNPM	1345	chr19:8509995:+	ELAVL1	24831	chr19:8056715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	HGNC_GENEFAM,HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-	SNU601_STOMACH	1	1	0.0199	TRUE	0	0	0	3	0	TRUE	ACH-000736
SNU601_STOMACH	IMMP1L--ZFP91	2	0	IMMP1L	1127	chr11:31531066:-	ZFP91	21287	chr11:58377303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1,ZFP91->ZFP91_zinc_finger_protein,chr11:58346584-58388515:+	SNU601_STOMACH	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	LYZ--CCT2	2	0	LYZ	3682	chr12:69746078:+	CCT2	12770	chr12:69983265:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LYZ->chr12:69742121-69748014:+,lysozyme,CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+	SNU601_STOMACH	1	1	0.0199	TRUE	1	6	0	5	1	TRUE	ACH-000736
SNU601_STOMACH	MINOS1--CAPZB	2	0	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	SNU601_STOMACH	1	1	0.0199	TRUE	2	7	0	21	0	FALSE	ACH-000736
SNU601_STOMACH	NELFB--TUBB4B	2	0	NELFB	7651	chr9:140161798:+	TUBB4B	14401	chr9:140136948:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LOCAL_REARRANGEMENT:+:[11466],NELFB->chr9:140149625-140167998:+,negative_elongation_factor_complex_member_B,TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb	SNU601_STOMACH	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU601_STOMACH	1	1	0.0199	FALSE	125	705	46	456	0	FALSE	ACH-000736
SNU601_STOMACH	PHIP--TOP1	2	0	PHIP	1789	chr6:79787165:-	TOP1	47803	chr20:39706222:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	PHIP->Oncogene{Bushman},chr6:79645584-79787953:-,pleckstrin_homology_domain_interacting_protein,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	SNU601_STOMACH	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	PTBP1--MISP	2	0	PTBP1	3369	chr19:799443:+	MISP	20371	chr19:761625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LOCAL_REARRANGEMENT:+:[32756],PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1,MISP->chr19:751126-764319:+,mitotic_spindle_positioning	SNU601_STOMACH	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	RP1-34H18.1--NAV3	2	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SNU601_STOMACH	1	1	0.0199	TRUE	254	575	65	124	0	FALSE	ACH-000736
SNU601_STOMACH	SH3KBP1--MYRFL	2	0	SH3KBP1	13083	chrX:19688980:-	MYRFL	40657	chr12:70284751:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-,MYRFL->chr12:70219084-70352877:+,myelin_regulatory_factor-like	SNU601_STOMACH	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000736
SNU601_STOMACH	EPHA2--ANO7P1	1	3	EPHA2	11634	chr1:16458216:-	ANO7P1	26378	chr1:16543104:-	ONLY_REF_SPLICE	YES	359	4	0.01	0.5	0.01	0.0299	LOCAL_REARRANGEMENT:-:[59822],EPHA2->EPH_receptor_A2,Oncogene{Bushman},chr1:16450832-16482582:-,ANO7P1->anoctamin_7_pseudogene_1,chr1:16542404-16554522:-	SNU601_STOMACH	0.01	0.5	0.0399	FALSE	0	0	0	1	0	FALSE	ACH-000736
SNU601_STOMACH	EPHA2--ARHGEF19	1	3	EPHA2	3978	chr1:16474873:-	ARHGEF19	19713	chr1:16535578:-	ONLY_REF_SPLICE	YES	354	4	0.01	0.5	0.01	0.0299	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[41767],EPHA2->EPH_receptor_A2,Oncogene{Bushman},chr1:16450832-16482582:-,ARHGEF19->Rho_guanine_nucleotide_exchange_factor_19,chr1:16524349-16539104:-	SNU601_STOMACH	0.01	0.5	0.0399	FALSE	0	1	0	1	1	FALSE	ACH-000736
SNU601_STOMACH	CHFR--EIF4A1	1	1	CHFR	2239	chr12:133522207:-	EIF4A1	37020	chr17:7478437:+	ONLY_REF_SPLICE	YES	0	3746	1	0	0.01	0.01	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	SNU601_STOMACH	0	1	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000736
SNU601_STOMACH	CTC-329D1.2--CYSTM1	1	1	CTC-329D1.2	1257	chr5:139780696:-	CYSTM1	7194	chr5:139574031:+	ONLY_REF_SPLICE	YES	1	258	0.67	0.01	0.01	0.01	LOCAL_INVERSION:-:+:[88839],CTC-329D1.2->chr5:139750476-139780952:-,CYSTM1->chr5:139554227-139661637:+,cysteine_rich_transmembrane_module_containing_1	SNU601_STOMACH	0.01	0.67	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000736
SNU601_STOMACH	EDF1--SAPCD2	1	1	EDF1	3072	chr9:139757358:-	SAPCD2	8559	chr9:139960826:-	ONLY_REF_SPLICE	YES	577	21	0	0.09	0.01	0.01	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,SAPCD2->chr9:139956581-139965040:-,suppressor_APC_domain_containing_2	SNU601_STOMACH	0	0.09	0.02	FALSE	0	0	0	2	0	FALSE	ACH-000736
SNU601_STOMACH	EPHA2--ANO7P1	1	1	EPHA2	3978	chr1:16474873:-	ANO7P1	26378	chr1:16543104:-	ONLY_REF_SPLICE	YES	354	4	0.01	0.33	0.01	0.01	LOCAL_REARRANGEMENT:-:[59822],EPHA2->EPH_receptor_A2,Oncogene{Bushman},chr1:16450832-16482582:-,ANO7P1->anoctamin_7_pseudogene_1,chr1:16542404-16554522:-	SNU601_STOMACH	0.01	0.33	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000736
SNU601_STOMACH	FXR2--SENP3	1	1	FXR2	1420	chr17:7517770:-	SENP3	21707	chr17:7473674:+	ONLY_REF_SPLICE	YES	26	281	0.07	0.01	0.01	0.01	LOCAL_INVERSION:-:+:[19261],FXR2->FMR1_autosomal_homolog_2,chr17:7494548-7518189:-,SENP3->SUMO1/sentrin/SMT3_specific_peptidase_3,chr17:7465192-7475287:+	SNU601_STOMACH	0.01	0.07	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000736
SNU601_STOMACH	GMDS-AS1--GMDS	1	1	GMDS-AS1	3357	chr6:2263918:+	GMDS	36647	chr6:2116114:-	ONLY_REF_SPLICE	NO	11	211	0.15	0.01	0.01	0.01	GTEx_FI:{Salivary_Gland=[count:2=pct:5.1],Thyroid=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},LOCAL_INVERSION:+:-:[56],GMDS-AS1->GMDS_antisense_RNA_1_(head_to_head),chr6:2245982-2482256:+,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	SNU601_STOMACH	0.01	0.15	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000736
SNU601_STOMACH	GMDS-AS1--GMDS	1	1	GMDS-AS1	3357	chr6:2263918:+	GMDS	34514	chr6:2124965:-	ONLY_REF_SPLICE	YES	11	182	0.15	0.01	0.01	0.01	GTEx_FI:{Salivary_Gland=[count:2=pct:5.1],Thyroid=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},LOCAL_INVERSION:+:-:[56],GMDS-AS1->GMDS_antisense_RNA_1_(head_to_head),chr6:2245982-2482256:+,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	SNU601_STOMACH	0.01	0.15	0.02	FALSE	2	2	2	3	0	FALSE	ACH-000736
SNU601_STOMACH	KRT8--RP11-983P16.4	1	1	KRT8	11078	chr12:53293559:-	RP11-983P16.4	27188	chr12:53408727:-	ONLY_REF_SPLICE	YES	10004	0	0	1	0.01	0.01	LOCAL_REARRANGEMENT:-:[64642],KRT8->chr12:53290977-53343738:-,keratin_8,RP11-983P16.4->chr12:53408380-53448222:-	SNU601_STOMACH	0	1	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000736
SNU601_STOMACH	NDUFA4--PHF14	1	1	NDUFA4	1241	chr7:10979643:-	PHF14	12995	chr7:11030330:+	ONLY_REF_SPLICE	NO	836	96	0	0.02	0.01	0.01	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SNU601_STOMACH	0	0.02	0.02	FALSE	1	0	0	3	0	FALSE	ACH-000736
SNU601_STOMACH	PPP1CB--BRE	1	1	PPP1CB	1537	chr2:28975042:+	BRE	31984	chr2:28521205:+	ONLY_REF_SPLICE	YES	332	34	0.01	0.06	0.01	0.01	GTEx_FI:{Esophagus=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2]},GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta,BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+	SNU601_STOMACH	0.01	0.06	0.02	FALSE	1	0	0	2	0	FALSE	ACH-000736
SNU601_STOMACH	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	5	1	0.29	0.01	0.01	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU601_STOMACH	0.29	1	0.02	TRUE	458	1351	185	561	0	FALSE	ACH-000736
SNU601_STOMACH	UBAP1--UBE2R2	1	1	UBAP1	1236	chr9:34179238:+	UBE2R2	16187	chr9:33886879:+	ONLY_REF_SPLICE	YES	80	100	0.02	0.02	0.01	0.01	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Muscle=[count:6=pct:2.6],Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4]},GTEx_v2:{count=2;pct=0.02%;dist=Vagina=1,Muscle_-_Skeletal=1},UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	SNU601_STOMACH	0.02	0.02	0.02	TRUE	8	5	0	9	0	FALSE	ACH-000736
SNU601_STOMACH	YWHAE--CRK	1	1	YWHAE	7944	chr17:1257505:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1567	168	0	0.01	0.01	0.01	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SNU601_STOMACH	0	0.01	0.02	FALSE	0	0	0	4	0	FALSE	ACH-000736
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCAR1--MZF1	183	85	CCAR1	2566	chr10:70482334:+	MZF1	30929	chr19:59082796:-	ONLY_REF_SPLICE	YES	106	12	0.72	0.96	2.1744	1.01	CCAR1->cell_division_cycle_and_apoptosis_regulator_1,chr10:70480769-70552134:+,MZF1->chr19:59073298-59084942:-,myeloid_zinc_finger_1	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	0.96	3.1844	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	162	43	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	2	0	0.99	1	1.9248	0.5109	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	2.4357	TRUE	0	0	0	25	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC27--GPHN	101	68	CDC27	5307	chr17:45247283:-	GPHN	49188	chr14:67555700:+	ONLY_REF_SPLICE	YES	63	50	0.73	0.77	1.2001	0.808	{Klijn_CCL:Lymphoid=1},CDC27->Oncogene{Bushman},cell_division_cycle_27,chr17:45195069-45266788:-,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.77	2.0081	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	114	8	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2478	7	0.05	0.95	1.3545	0.0951	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.95	1.4496	FALSE	43	37	8	105	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IFITM9P	88	73	IGH@	95370	chr14:106329408:-	IFITM9P	131843	chr11:69071233:-	INCL_NON_REF_SPLICE	YES	2657	0	0.06	1	1.0456	0.8674	IGH@->Oncogene{Bushman},IFITM9P->chr11:69070879-69071274:-,interferon_induced_transmembrane_protein_9_pseudogene	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	1.913	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	51	76	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	6	0	0.95	1	0.606	0.903	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	1.509	TRUE	1	1	0	28	1	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IFITM9P	59	42	IGH@	94353	chr14:106330425:-	IFITM9P	131843	chr11:69071233:-	INCL_NON_REF_SPLICE	YES	3229	0	0.03	1	0.701	0.499	IGH@->Oncogene{Bushman},IFITM9P->chr11:69070879-69071274:-,interferon_induced_transmembrane_protein_9_pseudogene	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	1.2	TRUE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IFITM9P	52	43	IGH@	94754	chr14:106330024:-	IFITM9P	131843	chr11:69071233:-	INCL_NON_REF_SPLICE	YES	3225	0	0.03	1	0.6179	0.5109	IGH@->Oncogene{Bushman},IFITM9P->chr11:69070879-69071274:-,interferon_induced_transmembrane_protein_9_pseudogene	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	1.1288	TRUE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	52	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6179	0.2733	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8912	TRUE	508	994	45	981	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JAKMIP3--INPP5A	43	8	JAKMIP3	13248	chr10:133959084:+	INPP5A	32350	chr10:134421419:+	ONLY_REF_SPLICE	YES	75	2	0.4	0.96	0.5109	0.0951	{Klijn_CCL:Lymphoid=1},JAKMIP3->Janus_kinase_and_microtubule_interacting_protein_3,chr10:133918175-133998313:+,INPP5A->chr10:134351324-134596979:+,inositol_polyphosphate-5-phosphatase_A	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.96	0.606	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPBL--WDR70	36	13	NIPBL	1420	chr5:36877280:+	WDR70	54689	chr5:37379591:+	ONLY_REF_SPLICE	YES	14	13	0.78	0.79	0.4277	0.1545	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,WDR70->WD_repeat_domain_70,chr5:37379314-37753537:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.79	0.5822	TRUE	0	2	0	2	1	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	29	10	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3446	0.1188	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4634	TRUE	477	1352	189	275	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC27--GPHN	25	23	CDC27	2753	chr17:45258928:-	GPHN	49188	chr14:67555700:+	ONLY_REF_SPLICE	YES	172	50	0.22	0.49	0.297	0.2733	{Klijn_CCL:Lymphoid=1},CDC27->Oncogene{Bushman},cell_division_cycle_27,chr17:45195069-45266788:-,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.49	0.5703	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	20	42	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	136	29	0.31	0.68	0.2376	0.499	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.68	0.7366	TRUE	267	562	48	632	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	29	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	133	2	0.19	0.94	0.3446	0.0356	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.94	0.3802	TRUE	519	3926	326	965	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IFITM9P	11	70	IGH@	95370	chr14:106329408:-	IFITM9P	131846	chr11:69071230:-	INCL_NON_REF_SPLICE	YES	2657	0	0.03	1	0.1307	0.8317	IGH@->Oncogene{Bushman},IFITM9P->chr11:69070879-69071274:-,interferon_induced_transmembrane_protein_9_pseudogene	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.9624	TRUE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TANGO6--DUS2	23	4	TANGO6	6484	chr16:68901123:+	DUS2	40755	chr16:68087467:+	ONLY_REF_SPLICE	YES	8	36	0.77	0.43	0.2733	0.0475	TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog,DUS2->chr16:68021649-68113223:+,dihydrouridine_synthase_2	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.77	0.3208	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	20	14	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.2376	0.1663	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.4039	FALSE	43	37	8	105	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IFITM9P	13	41	IGH@	94353	chr14:106330425:-	IFITM9P	131846	chr11:69071230:-	INCL_NON_REF_SPLICE	YES	3229	0	0.02	1	0.1545	0.4872	IGH@->Oncogene{Bushman},IFITM9P->chr11:69070879-69071274:-,interferon_induced_transmembrane_protein_9_pseudogene	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.6417	TRUE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	23	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2733	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2733	FALSE	499	1288	110	792	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	14	34	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	132	29	0.27	0.62	0.1663	0.404	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.62	0.5703	TRUE	267	562	48	632	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPECC1L--RP11-65J3.3	21	5	SPECC1L	1166	chr22:24666951:+	RP11-65J3.3	31588	chr9:132193175:-	INCL_NON_REF_SPLICE	YES	54	2	0.33	0.93	0.2495	0.0594	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,RP11-65J3.3->chr9:132192931-132213701:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.93	0.3089	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	20	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	10477	5	0	0.81	0.2376	0.0238	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.81	0.2614	FALSE	230	193	14	283	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IFITM9P	7	42	IGH@	93161	chr14:106331617:-	IFITM9P	131843	chr11:69071233:-	INCL_NON_REF_SPLICE	NO	3231	0	0.01	1	0.0832	0.499	IGH@->Oncogene{Bushman},IFITM9P->chr11:69070879-69071274:-,interferon_induced_transmembrane_protein_9_pseudogene	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.5822	FALSE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	16	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	64	2	0.25	0.91	0.1901	0.0594	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.91	0.2495	FALSE	59	21	0	114	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WASH3P--LRRC8B	15	8	WASH3P	7635	chr15:102515368:+	LRRC8B	20006	chr1:90049208:+	INCL_NON_REF_SPLICE	YES	113	9	0.17	0.72	0.1782	0.0951	WASH3P->WAS_protein_family_homolog_3_pseudogene,chr15:102501356-102516768:+,LRRC8B->chr1:89990395-90063423:+,leucine-rich_repeat_containing_8_family_member_B	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.72	0.2733	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IFITM9P	6	42	IGH@	94754	chr14:106330024:-	IFITM9P	131846	chr11:69071230:-	INCL_NON_REF_SPLICE	YES	3225	0	0.01	1	0.0713	0.499	IGH@->Oncogene{Bushman},IFITM9P->chr11:69070879-69071274:-,interferon_induced_transmembrane_protein_9_pseudogene	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.5703	TRUE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CARD8--TXNDC5	16	1	CARD8	1155	chr19:48759049:-	TXNDC5	46760	chr6:7886276:-	ONLY_REF_SPLICE	YES	5	6087	0.77	0	0.1901	0.0119	CARD8->Oncogene{Bushman},caspase_recruitment_domain_family_member_8,chr19:48684027-48759203:-,TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.77	0.202	TRUE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	2	50	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	9	0	0.85	1	0.0238	0.5941	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.6179	TRUE	0	0	0	12	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1545	0.0475	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.202	FALSE	499	1288	110	792	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	13	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9840	15960	0	0	0.1545	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1664	FALSE	183	104	9	328	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	35	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	132	29	0.23	0.57	0.0475	0.4159	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.57	0.4634	TRUE	267	562	48	632	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	11	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13257	0	0	1	0.1307	0.0594	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1901	FALSE	231	217	16	283	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	1	41	AP003900.6	3299	chr21:11174002:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	6	2	0.88	0.95	0.0119	0.4872	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.95	0.4991	TRUE	1	1	0	28	1	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	9	7	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4359	53	0	0.23	0.1069	0.0832	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.23	0.1901	FALSE	43	37	8	105	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKD3--RP11-6N13.1	10	2	PRKD3	4269	chr2:37543380:-	RP11-6N13.1	33221	chr5:104222676:-	ONLY_REF_SPLICE	YES	379	0	0.03	1	0.1188	0.0238	PRKD3->chr2:37477645-37551951:-,protein_kinase_D3,RP11-6N13.1->chr5:103718999-104728671:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.1426	TRUE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	9	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	64	1	0.18	0.93	0.1069	0.0594	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.93	0.1663	FALSE	59	21	0	114	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-ND5	9	4	IGH@	102295	chr14:106307272:-	MT-ND5	132519	chrM:13054:+	INCL_NON_REF_SPLICE	YES	12472	2165	0	0.01	0.1069	0.0475	IGH@->Oncogene{Bushman},MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1544	FALSE	0	0	0	2	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	18	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0.2139	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2733	FALSE	43	37	8	105	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPECC1L--RP11-65J3.3	8	6	SPECC1L	2270	chr22:24672771:+	RP11-65J3.3	31588	chr9:132193175:-	INCL_NON_REF_SPLICE	YES	58	2	0.19	0.88	0.0951	0.0713	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,RP11-65J3.3->chr9:132192931-132213701:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.88	0.1664	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	1	32	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	NO	6	5	0.85	0.87	0.0119	0.3802	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.87	0.3921	TRUE	0	0	0	11	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WASH3P--LRRC8B	7	8	WASH3P	8462	chr15:102516195:+	LRRC8B	20006	chr1:90049208:+	INCL_NON_REF_SPLICE	YES	180	9	0.08	0.62	0.0832	0.0951	WASH3P->WAS_protein_family_homolog_3_pseudogene,chr15:102501356-102516768:+,LRRC8B->chr1:89990395-90063423:+,leucine-rich_repeat_containing_8_family_member_B	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.62	0.1783	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERC1--WNT5B	8	3	ERC1	12874	chr12:1225199:+	WNT5B	51638	chr12:1740464:+	ONLY_REF_SPLICE	YES	72	4	0.13	0.73	0.0951	0.0356	NEIGHBORS[33958],ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,WNT5B->Wnt_family_member_5B,chr12:1639057-1756409:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.73	0.1307	FALSE	0	2	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	14	MT-ND5	2667	chrM:14003:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1158	0	0.02	1	0.0594	0.1663	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.2257	FALSE	43	37	8	105	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAD21--EIF3H	7	6	RAD21	4284	chr8:117875369:-	EIF3H	29609	chr8:117671219:-	ONLY_REF_SPLICE	YES	525	1637	0.02	0.01	0.0832	0.0713	{Klijn_CCL:Lymphoid=1},NEIGHBORS[79010],RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.1545	FALSE	0	2	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	13	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	12574	0	0	1	0.0594	0.1545	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2139	FALSE	231	217	16	283	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	13	MT-ND5	2794	chrM:14130:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	7	1	0.72	0.0594	0.1545	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	1	0.2139	FALSE	43	37	8	105	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	6	9	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0713	0.1069	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1782	TRUE	274	363	69	150	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	3	20	AP003900.6	1122	chr21:11169841:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	2	2	0.92	0.92	0.0356	0.2376	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	0.92	0.2732	TRUE	0	0	0	25	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	6	8	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	2884	0	0	1	0.0713	0.0951	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1664	FALSE	43	37	8	105	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--CARD8	8	0	TXNDC5	11039	chr6:7886194:-	CARD8	39956	chr19:48707500:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0951	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,CARD8->Oncogene{Bushman},caspase_recruitment_domain_family_member_8,chr19:48684027-48759203:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	15	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4409	53	0	0.26	0.0475	0.1782	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.26	0.2257	FALSE	218	210	16	281	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12803	7	0	0.59	0.0832	0.0356	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.59	0.1188	FALSE	231	205	14	283	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMC5-AS1--APBA1	7	3	SMC5-AS1	1952	chr9:72872831:-	APBA1	19630	chr9:72064712:-	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0832	0.0356	SMC5-AS1->SMC5_antisense_RNA_1_(head_to_head),chr9:72808913-72873782:-,APBA1->amyloid_beta_precursor_protein_binding_family_A_member_1,chr9:72042446-72287222:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1188	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND1A--CLIP1	7	2	DENND1A	6804	chr9:126519982:-	CLIP1	47383	chr12:122865105:-	ONLY_REF_SPLICE	YES	43	13	0.17	0.41	0.0832	0.0238	DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.41	0.107	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	7	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12011	15954	0	0	0.0832	0.0238	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.107	FALSE	183	104	9	328	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	18	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0.2139	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2495	FALSE	43	37	8	105	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	18	MT-ND5	2835	chrM:14171:+	MT-ATP8	5865	chrM:8418:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0.2139	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2495	FALSE	43	37	8	105	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	7	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	38	1	0.17	0.89	0.0832	0.0119	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.89	0.0951	FALSE	59	21	0	114	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFE2L1--RP11-433M22.2	6	5	NFE2L1	8029	chr17:46134864:+	RP11-433M22.2	16122	chr17:46542809:+	ONLY_REF_SPLICE	YES	477	0	0.02	1	0.0713	0.0594	NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,RP11-433M22.2->chr17:46537732-46543402:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.1307	TRUE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CECR7--PSPC1	7	0	CECR7	1775	chr22:17518234:+	PSPC1	24067	chr13:20251963:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0832	0	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	7	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0832	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0832	FALSE	183	104	9	328	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	15	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2226	53	0.01	0.25	0.0356	0.1782	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.25	0.2138	FALSE	216	209	16	281	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	11	MT-ND5	2641	chrM:13977:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	NO	1643	7	0.01	0.68	0.0475	0.1307	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.68	0.1782	FALSE	43	37	8	105	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	14	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12422	53	0	0.24	0.0356	0.1663	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.24	0.2019	FALSE	231	217	16	283	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	14	MT-ND5	2644	chrM:13980:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	1535	0	0.01	1	0.0356	0.1663	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.2019	FALSE	43	37	8	105	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	3	14	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0.1663	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2019	TRUE	160	277	29	98	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	8	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	4272	0	0	1	0.0475	0.0951	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1426	FALSE	43	37	8	105	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0713	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0713	FALSE	499	1288	110	792	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0713	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0713	FALSE	499	1288	110	792	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	2	15	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	6	49	0.74	0.26	0.0238	0.1782	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.74	0.202	TRUE	0	0	0	13	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	11	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15	7	0.48	0.67	0.0356	0.1307	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.67	0.1663	FALSE	43	37	8	105	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM59--SLC38A1	5	3	TRIM59	3519	chr3:160166514:-	SLC38A1	21287	chr12:46633676:-	ONLY_REF_SPLICE	YES	13	307	0.38	0.03	0.0594	0.0356	TRIM59->chr3:160150233-160203561:-,tripartite_motif_containing_59,SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.38	0.095	TRUE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	6	MT-ATP6	1555	chrM:9081:+	MT-CO1	5199	chrM:6421:+	INCL_NON_REF_SPLICE	YES	3400	14526	0	0	0.0475	0.0713	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1188	FALSE	183	104	9	328	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10477	7	0	0.5	0.0594	0.0238	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.5	0.0832	FALSE	230	193	14	283	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	10	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	NO	12093	0	0	1	0.0356	0.1188	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1544	FALSE	231	217	16	283	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	10	MT-ND4	1762	chrM:11521:+	MT-ATP8	5456	chrM:8443:+	INCL_NON_REF_SPLICE	YES	12204	0	0	1	0.0356	0.1188	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1544	FALSE	231	217	16	283	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.91	0.91	0.0475	0.0713	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.91	0.1188	FALSE	515	4851	409	746	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--B2M	5	2	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	5155	0	0	1	0.0594	0.0238	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0832	FALSE	0	0	0	28	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	5	1	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.86	0.0594	0.0119	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0713	TRUE	0	1	0	84	1	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	5	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	13139	0	0	1	0.0475	0.0594	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1069	FALSE	231	217	16	283	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	5	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	13226	0	0	1	0.0475	0.0594	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1069	FALSE	231	217	16	283	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	1	16	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	2	5	0.89	0.77	0.0119	0.1901	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.89	0.202	TRUE	0	0	0	16	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HK2--TET3	4	4	HK2	3521	chr2:75081582:+	TET3	28889	chr2:74300676:+	ONLY_REF_SPLICE	YES	36	4	0.18	0.67	0.0475	0.0475	{Klijn_CCL:Lymphoid=1},HK2->chr2:75061108-75120486:+,hexokinase_2,TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.67	0.095	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	4	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	11930	14876	0	0	0.0475	0.0475	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.095	FALSE	183	104	9	328	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	4	4	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	56	1	0.12	0.89	0.0475	0.0475	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.89	0.095	FALSE	59	21	0	114	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0594	FALSE	351	233	23	137	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	4	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0.0475	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.095	FALSE	499	1288	110	792	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0594	FALSE	0	0	0	189	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A1--IFT80	4	4	SLC38A1	2492	chr12:46662309:-	IFT80	33739	chr3:160102434:-	ONLY_REF_SPLICE	YES	284	14	0.03	0.36	0.0475	0.0475	SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1,IFT80->chr3:159974774-160117668:-,intraflagellar_transport_80	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.36	0.095	TRUE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3400	16258	0	0	0.0475	0.0356	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0831	FALSE	183	104	9	328	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	3	MT-ND4	1458	chrM:11217:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	13868	71	0	0.09	0.0475	0.0356	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0831	FALSE	231	217	16	283	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A1--IFT80	4	3	SLC38A1	2153	chr12:46662648:-	IFT80	33739	chr3:160102434:-	ONLY_REF_SPLICE	YES	193	14	0.04	0.33	0.0475	0.0356	SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1,IFT80->chr3:159974774-160117668:-,intraflagellar_transport_80	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.33	0.0831	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10555	53	0	0.1	0.0475	0.0238	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.1	0.0713	FALSE	230	198	14	283	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0238	0.1188	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1426	FALSE	275	511	55	178	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	3	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	64	1	0.11	0.89	0.0356	0.0594	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.89	0.095	FALSE	59	21	0	114	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	23	1	0.18	0.83	0.0475	0.0119	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.83	0.0594	FALSE	59	21	0	114	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	5	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	13112	0	0	1	0.0356	0.0594	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.095	FALSE	231	217	16	283	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0475	FALSE	183	104	9	328	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0475	FALSE	231	205	14	283	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV1--CNTN4	3	4	REV1	3576	chr2:100078958:-	CNTN4	46395	chr3:2908436:+	ONLY_REF_SPLICE	YES	30	0	0.19	1	0.0356	0.0475	REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-,CNTN4->Oncogene{Bushman},chr3:2140497-3099645:+,contactin_4	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.0831	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDF4--MT-ND4L	4	0	SDF4	2252	chr1:1164215:-	MT-ND4L	13838	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0475	FALSE	0	0	0	7	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SERPINI1--PDCD10	4	0	SERPINI1	1581	chr3:167453611:+	PDCD10	19277	chr3:167438061:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0475	0	LOCAL_INVERSION:+:-:[304],SERPINI1->chr3:167453031-167543356:+,serpin_family_I_member_1,PDCD10->chr3:167401086-167452727:-,programmed_cell_death_10	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0475	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	3	MT-ND5	1969	chrM:13305:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	3644	510	0	0.01	0.0356	0.0356	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0712	FALSE	43	37	8	105	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	2	MT-ND4	1200	chrM:10959:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	NO	10195	0	0	1	0.0356	0.0238	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0594	FALSE	230	193	14	283	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.92	1	0.0119	0.1188	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1307	FALSE	407	2205	196	549	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5332	chrM:6554:+	INCL_NON_REF_SPLICE	YES	9840	16100	0	0	0.0356	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0475	FALSE	183	104	9	328	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	3	1	MT-ATP6	1146	chrM:8672:+	MT-CO2	4974	chrM:7878:+	INCL_NON_REF_SPLICE	YES	57	10	0.07	0.29	0.0356	0.0119	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.29	0.0475	FALSE	59	21	0	114	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7605	53	0	0.07	0.0356	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0475	FALSE	230	193	14	283	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	9	RP11-444D3.1	8531	chr12:24430150:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0119	0.1069	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1188	TRUE	13	17	1	13	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCRN3--HYDIN	3	1	SCRN3	8341	chr2:175274953:+	HYDIN	51889	chr16:71026113:-	ONLY_REF_SPLICE	YES	19	0	0.17	1	0.0356	0.0119	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.0475	TRUE	0	0	0	3	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TANGO6--DUS2	3	1	TANGO6	6425	chr16:68901064:+	DUS2	40755	chr16:68087467:+	INCL_NON_REF_SPLICE	YES	8	36	0.33	0.1	0.0356	0.0119	TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog,DUS2->chr16:68021649-68113223:+,dihydrouridine_synthase_2	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.33	0.0475	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC88C--TTC7B	3	0	CCDC88C	20377	chr14:91779424:-	TTC7B	76454	chr14:91007933:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0	CCDC88C->chr14:91737667-91884188:-,coiled-coil_domain_containing_88C,TTC7B->chr14:91006932-91282823:-,tetratricopeptide_repeat_domain_7B	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	3	0	MT-ATP6	1142	chrM:8668:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0356	FALSE	59	21	0	114	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0356	FALSE	231	204	14	283	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ITGB3BP	3	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0356	TRUE	0	6	0	9	2	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-476K15.1--CTD-2015H3.2	3	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0356	FALSE	0	46	0	73	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--CARD8	3	0	TXNDC5	11039	chr6:7886194:-	CARD8	38819	chr19:48709777:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,CARD8->Oncogene{Bushman},caspase_recruitment_domain_family_member_8,chr19:48684027-48759203:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	1	7	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	2	49	0.8	0.14	0.0119	0.0832	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.8	0.0951	TRUE	0	0	0	13	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPR--PVT1	2	2	HNRNPR	8792	chr1:23644976:-	PVT1	30412	chr8:128944711:+	ONLY_REF_SPLICE	YES	595	153	0.01	0.03	0.0238	0.0238	HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0476	FALSE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPBL--WDR70	1	6	NIPBL	1420	chr5:36877280:+	WDR70	55755	chr5:37381704:+	ONLY_REF_SPLICE	YES	14	154	0.33	0.04	0.0119	0.0713	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,WDR70->WD_repeat_domain_70,chr5:37379314-37753537:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.33	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C11orf48--AHNAK	2	1	C11orf48	6491	chr11:62432321:-	AHNAK	37092	chr11:62201363:-	ONLY_REF_SPLICE	YES	645	15	0	0.17	0.0238	0.0119	C11orf48->chr11:62430287-62439727:-,AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.17	0.0357	FALSE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLASP1--XIRP2	2	1	CLASP1	2696	chr2:122363277:-	XIRP2	64477	chr2:168067245:+	ONLY_REF_SPLICE	YES	25	0	0.11	1	0.0238	0.0119	CLASP1->chr2:122095352-122407163:-,cytoplasmic_linker_associated_protein_1,XIRP2->chr2:167744997-168116263:+,xin_actin_binding_repeat_containing_2	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM59--SLC38A1	2	1	TRIM59	2528	chr3:160167505:-	SLC38A1	21287	chr12:46633676:-	ONLY_REF_SPLICE	YES	0	307	1	0.01	0.0238	0.0119	TRIM59->chr3:160150233-160203561:-,tripartite_motif_containing_59,SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0357	FALSE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--PVT1	2	1	ZNF738	7035	chr19:21558766:+	PVT1	37551	chr8:129113226:+	ONLY_REF_SPLICE	YES	46	73	0.06	0.04	0.0238	0.0119	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.06	0.0357	TRUE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MINK1--NFATC3	2	0	MINK1	1253	chr17:4736935:+	NFATC3	31880	chr16:68200746:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	MINK1->chr17:4736683-4801356:+,misshapen_like_kinase_1,NFATC3->Oncogene{Bushman},chr16:68118654-68263162:+,nuclear_factor_of_activated_T-cells_3	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MZB1--UBE2D2	2	0	MZB1	1402	chr5:138725369:-	UBE2D2	10027	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	MZB1->chr5:138723169-138725770:-,marginal_zone_B_and_B1_cell_specific_protein,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0238	TRUE	0	0	0	2	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCRN3--HYDIN	2	0	SCRN3	8341	chr2:175274953:+	HYDIN	52703	chr16:71025299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0238	TRUE	0	0	0	3	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCRN3--HYDIN	2	0	SCRN3	8341	chr2:175274953:+	HYDIN	53782	chr16:71022415:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0238	TRUE	0	0	0	3	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBC1D25--SLC38A2	2	0	TBC1D25	2622	chrX:48399830:+	SLC38A2	17698	chr12:46757786:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	TBC1D25->TBC1_domain_family_member_25,chrX:48397845-48420997:+,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF207--SNHG14	2	0	ZNF207	12479	chr17:30696801:+	SNHG14	65802	chr15:25336737:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	ZNF207->chr17:30677136-30708905:+,zinc_finger_protein_207,SNHG14->chr15:25223730-25664609:+,small_nucleolar_RNA_host_gene_14	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	1	3	C15orf57	2548	chr15:40854971:-	CBX3	23883	chr7:26248086:+	ONLY_REF_SPLICE	NO	132	1231	0.03	0	0.0119	0.0356	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0475	FALSE	0	0	0	2	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A1--MTUS2-AS2	1	3	SLC7A1	3441	chr13:30127898:-	MTUS2-AS2	25337	chr13:29814264:-	ONLY_REF_SPLICE	YES	15	1	0.21	0.8	0.0119	0.0356	SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1,MTUS2-AS2->MTUS2_antisense_RNA_2,chr13:29813516-29824691:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.8	0.0475	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A1--MTUS2-AS2	1	3	SLC7A1	3441	chr13:30127898:-	MTUS2-AS2	24167	chr13:29816835:-	ONLY_REF_SPLICE	YES	15	2	0.21	0.67	0.0119	0.0356	SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1,MTUS2-AS2->MTUS2_antisense_RNA_2,chr13:29813516-29824691:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.67	0.0475	TRUE	0	0	0	1	0	TRUE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCMTD1--TCEA1	1	2	PCMTD1	1246	chr8:52811490:-	TCEA1	22312	chr8:54923052:-	ONLY_REF_SPLICE	NO	73	663	0.04	0	0.0119	0.0238	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,TCEA1->Oncogene{Bushman},chr8:54879112-54935089:-,transcription_elongation_factor_A1	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0357	FALSE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-127B16.1--TPT1	1	2	RP11-127B16.1	1827	chr6:93432721:-	TPT1	8810	chr13:45911523:-	ONLY_REF_SPLICE	YES	0	2195	1	0	0.0119	0.0238	RP11-127B16.1->chr6:93432721-93433547:-,TPT1->chr13:45911008-45915505:-,tumor_protein,_translationally-controlled_1	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0357	FALSE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM59--SLC38A1	1	2	TRIM59	3519	chr3:160166514:-	SLC38A1	22502	chr12:46623422:-	ONLY_REF_SPLICE	NO	13	223	0.19	0.01	0.0119	0.0238	TRIM59->chr3:160150233-160203561:-,tripartite_motif_containing_59,SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.19	0.0357	FALSE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--DTYMK	1	1	AC131097.3	2273	chr2:242824786:+	DTYMK	11615	chr2:242625292:-	ONLY_REF_SPLICE	YES	19	321	0.1	0.01	0.0119	0.0119	AC131097.3->chr2:242823514-243020873:+,DTYMK->chr2:242615157-242626406:-,deoxythymidylate_kinase	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.1	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NAPB--DBNL	1	1	NAPB	1184	chr20:23401942:-	DBNL	23963	chr7:44098501:+	ONLY_REF_SPLICE	NO	26	436	0.07	0	0.0119	0.0119	NAPB->NSF_attachment_protein_beta,chr20:23355159-23402125:-,DBNL->chr7:44084239-44109055:+,drebrin_like	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	18992	chr12:23999127:-	ONLY_REF_SPLICE	NO	0	12	1	0.14	0.0119	0.0119	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.0238	TRUE	3	4	0	10	0	FALSE	ACH-000380
KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0119	0.0119	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMS12BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0238	TRUE	62	24	1	171	0	FALSE	ACH-000380
SKMEL28_SKIN	ZBTB8OS--YARS	179	31	ZBTB8OS	1471	chr1:33116034:-	YARS	25839	chr1:33246746:-	ONLY_REF_SPLICE	YES	54	158	0.8	0.57	2.2052	0.3819	{Klijn_CCL:Skin=1},ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	SKMEL28_SKIN	0.57	0.8	2.5871	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	ZNF236--VAPA	131	10	ZNF236	1056	chr18:74534618:+	VAPA	54142	chr18:9950392:+	ONLY_REF_SPLICE	YES	0	184	1	0.43	1.6139	0.1232	ZNF236->chr18:74534563-74682683:+,zinc_finger_protein_236,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	SKMEL28_SKIN	0.43	1	1.7371	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	ZBTB8OS--YARS	51	33	ZBTB8OS	1475	chr1:33116030:-	YARS	25839	chr1:33246746:-	ONLY_REF_SPLICE	YES	83	158	0.5	0.35	0.6283	0.4066	{Klijn_CCL:Skin=1},ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	SKMEL28_SKIN	0.35	0.5	1.0349	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	MT-ND4--MT-CO1	51	2	MT-ND4	1205	chrM:10964:+	MT-CO1	5695	chrM:6220:+	INCL_NON_REF_SPLICE	YES	13713	22037	0	0	0.6283	0.0246	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL28_SKIN	0	0	0.6529	FALSE	19	89	11	16	0	FALSE	ACH-000615
SKMEL28_SKIN	ZBTB8OS--YARS	33	49	ZBTB8OS	1502	chr1:33116003:-	YARS	25839	chr1:33246746:-	ONLY_REF_SPLICE	YES	100	158	0.45	0.34	0.4066	0.6037	{Klijn_CCL:Skin=1},ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	SKMEL28_SKIN	0.34	0.45	1.0103	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	SLC39A11--LINC00511	39	15	SLC39A11	12214	chr17:70845773:-	LINC00511	30134	chr17:70614703:-	ONLY_REF_SPLICE	YES	68	0	0.44	1	0.4805	0.1848	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	SKMEL28_SKIN	0.44	1	0.6653	FALSE	1	0	0	1	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-TA--MT-TC	38	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4682	0.0123	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL28_SKIN	1	1	0.4805	FALSE	462	80	0	856	0	FALSE	ACH-000615
SKMEL28_SKIN	TIMM23B--LINC00843	33	8	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4066	0.0986	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKMEL28_SKIN	1	1	0.5052	TRUE	508	994	45	981	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ND6--MT-TE	33	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4066	0.0493	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL28_SKIN	1	1	0.4559	FALSE	499	1288	110	792	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ND4--MT-CO1	28	8	MT-ND4	1903	chrM:11662:+	MT-CO1	6015	chrM:6540:+	INCL_NON_REF_SPLICE	NO	15739	26048	0	0	0.345	0.0986	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL28_SKIN	0	0	0.4436	FALSE	19	92	11	16	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ND6--MT-TE	25	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.89	1	0.308	0.1848	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL28_SKIN	0.89	1	0.4928	FALSE	499	1288	110	792	0	FALSE	ACH-000615
SKMEL28_SKIN	EPS15--RASSF3	24	3	EPS15	1130	chr1:51984871:-	RASSF3	40830	chr12:65078567:+	ONLY_REF_SPLICE	YES	9	44	0.75	0.38	0.2957	0.037	{Klijn_CCL:Skin=1},EPS15->Oncogene{Bushman},chr1:51819935-51985000:-,epidermal_growth_factor_receptor_pathway_substrate_15,RASSF3->Ras_association_domain_family_member_3,chr12:65004293-65091347:+	SKMEL28_SKIN	0.38	0.75	0.3327	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	TIMM23--RP11-464F9.1	22	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	129	3	0.16	0.89	0.271	0.037	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKMEL28_SKIN	0.16	0.89	0.308	TRUE	519	3926	326	965	0	FALSE	ACH-000615
SKMEL28_SKIN	BLCAP--SRC	20	9	BLCAP	1139	chr20:36156195:-	SRC	18119	chr20:35993607:+	ONLY_REF_SPLICE	YES	54	57	0.35	0.34	0.2464	0.1109	LOCAL_INVERSION:-:+:[86421],BLCAP->Oncogene{Bushman},bladder_cancer_associated_protein,chr20:36120874-36156333:-,SRC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,SRC_proto-oncogene,_non-receptor_tyrosine_kinase,chr20:35973088-36034453:+	SKMEL28_SKIN	0.34	0.35	0.3573	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	MT-ND6--MT-TE	19	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2341	0.0616	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL28_SKIN	1	1	0.2957	FALSE	499	1288	110	792	0	FALSE	ACH-000615
SKMEL28_SKIN	RP11-444D3.1--SOX5	18	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	7	1	0.77	0.2218	0.0616	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL28_SKIN	0.77	1	0.2834	TRUE	477	1352	189	275	0	FALSE	ACH-000615
SKMEL28_SKIN	MRPS35--STK38L	17	8	MRPS35	4453	chr12:27872801:+	STK38L	18291	chr12:27450643:+	ONLY_REF_SPLICE	YES	151	6	0.14	0.81	0.2094	0.0986	{Klijn_CCL:Skin=1},MRPS35->chr12:27863706-27909228:+,mitochondrial_ribosomal_protein_S35,STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like	SKMEL28_SKIN	0.14	0.81	0.308	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-CO2	17	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	96	9	0.17	0.69	0.2094	0.037	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL28_SKIN	0.17	0.69	0.2464	FALSE	59	21	0	114	0	FALSE	ACH-000615
SKMEL28_SKIN	ZNF654--HMGB2	16	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1971	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKMEL28_SKIN	1	1	0.1971	TRUE	0	0	0	518	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ND4--MT-CO1	13	11	MT-ND4	1773	chrM:11532:+	MT-CO1	5916	chrM:6441:+	INCL_NON_REF_SPLICE	YES	16387	24925	0	0	0.1602	0.1355	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL28_SKIN	0	0	0.2957	FALSE	19	92	11	16	0	FALSE	ACH-000615
SKMEL28_SKIN	MBP--MT-ND4	13	1	MBP	26149	chr18:74697557:-	MT-ND4	36144	chrM:10980:+	INCL_NON_REF_SPLICE	NO	1292	10336	0.01	0	0.1602	0.0123	MBP->chr18:74690783-74845639:-,myelin_basic_protein,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SKMEL28_SKIN	0	0.01	0.1725	FALSE	5	0	0	1	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ND6--MT-TE	7	21	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.85	1	0.0862	0.2587	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL28_SKIN	0.85	1	0.3449	FALSE	499	1288	110	792	0	FALSE	ACH-000615
SKMEL28_SKIN	C15orf57--CBX3	9	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	18	39	0.49	0.3	0.1109	0.0986	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKMEL28_SKIN	0.3	0.49	0.2095	TRUE	267	562	48	632	0	FALSE	ACH-000615
SKMEL28_SKIN	HSP90AB1--MT-RNR2	11	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1355	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL28_SKIN	1	1	0.1355	FALSE	13	9	0	364	0	FALSE	ACH-000615
SKMEL28_SKIN	ARFGEF2--RTFDC1	9	6	ARFGEF2	25184	chr20:47621758:+	RTFDC1	52671	chr20:55088371:+	ONLY_REF_SPLICE	YES	108	437	0.12	0.03	0.1109	0.0739	ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,RTFDC1->chr20:55043647-55093943:+,replication_termination_factor_2_domain_containing_1	SKMEL28_SKIN	0.03	0.12	0.1848	TRUE	0	0	0	1	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ND6--MT-TE	6	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0739	0.2094	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL28_SKIN	1	1	0.2833	FALSE	499	1288	110	792	0	FALSE	ACH-000615
SKMEL28_SKIN	TIMP3--MT-ND4	10	1	TIMP3	5621	chr22:33255392:+	MT-ND4	12727	chrM:11227:+	INCL_NON_REF_SPLICE	YES	2005	17482	0.01	0	0.1232	0.0123	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SKMEL28_SKIN	0	0.01	0.1355	FALSE	0	0	0	10	0	FALSE	ACH-000615
SKMEL28_SKIN	G3BP1--CTB-113P19.1	9	4	G3BP1	6587	chr5:151170623:+	CTB-113P19.1	32398	chr5:151104126:+	ONLY_REF_SPLICE	YES	497	0	0.03	1	0.1109	0.0493	LOCAL_REARRANGEMENT:+:[46263],G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-113P19.1->chr5:151056506-151104343:+	SKMEL28_SKIN	0.03	1	0.1602	TRUE	0	0	0	1	0	FALSE	ACH-000615
SKMEL28_SKIN	DDX27--CEP250	8	5	DDX27	8675	chr20:47846886:+	CEP250	30207	chr20:34057715:+	ONLY_REF_SPLICE	YES	265	23	0.05	0.36	0.0986	0.0616	DDX27->DEAD-box_helicase_27,chr20:47835884-47860614:+,CEP250->centrosomal_protein_250,chr20:34042985-34099804:+	SKMEL28_SKIN	0.05	0.36	0.1602	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-RNR2	9	1	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	12821	6299	0	0	0.1109	0.0123	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL28_SKIN	0	0	0.1232	FALSE	63	17	1	58	0	FALSE	ACH-000615
SKMEL28_SKIN	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1109	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL28_SKIN	1	1	0.1109	FALSE	13	9	0	364	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-CO1	8	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13306	26674	0	0	0.0986	0.037	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL28_SKIN	0	0	0.1356	FALSE	183	104	9	328	0	FALSE	ACH-000615
SKMEL28_SKIN	C15orf57--CBX3	7	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	18	41	0.42	0.24	0.0862	0.0739	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKMEL28_SKIN	0.24	0.42	0.1601	TRUE	267	562	48	632	0	FALSE	ACH-000615
SKMEL28_SKIN	GAB2--PRCP	8	2	GAB2	1703	chr11:78128692:-	PRCP	29137	chr11:82571159:-	ONLY_REF_SPLICE	YES	19	163	0.34	0.06	0.0986	0.0246	GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,PRCP->chr11:82534544-82681626:-,prolylcarboxypeptidase	SKMEL28_SKIN	0.06	0.34	0.1232	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	MT-ND5--MT-ND6	8	1	MT-ND5	2795	chrM:14131:+	MT-ND6	6322	chrM:14164:-	INCL_NON_REF_SPLICE	YES	0	594	1	0.01	0.0986	0.0123	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SKMEL28_SKIN	0.01	1	0.1109	FALSE	26	124	4	93	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-CO2	6	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	96	8	0.09	0.53	0.0739	0.037	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL28_SKIN	0.09	0.53	0.1109	FALSE	59	21	0	114	0	FALSE	ACH-000615
SKMEL28_SKIN	FRMD4B--FAM19A4	6	2	FRMD4B	3925	chr3:69481785:-	FAM19A4	50540	chr3:68802169:-	ONLY_REF_SPLICE	YES	141	0	0.05	1	0.0739	0.0246	FRMD4B->FERM_domain_containing_4B,chr3:69219141-69591734:-,FAM19A4->chr3:68780917-68981761:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A4	SKMEL28_SKIN	0.05	1	0.0985	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	RP1-34H18.1--NAV3	6	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0739	0.0123	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SKMEL28_SKIN	1	1	0.0862	TRUE	254	575	65	124	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-CO2	4	7	MT-ATP6	1303	chrM:8829:+	MT-CO2	4870	chrM:7774:+	INCL_NON_REF_SPLICE	YES	118	8	0.09	0.58	0.0493	0.0862	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL28_SKIN	0.09	0.58	0.1355	FALSE	59	21	0	114	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-CO2	5	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	85	7	0.09	0.53	0.0616	0.037	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL28_SKIN	0.09	0.53	0.0986	FALSE	59	21	0	114	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-CO1	5	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	11471	26165	0	0	0.0616	0.0246	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL28_SKIN	0	0	0.0862	FALSE	183	104	9	328	0	FALSE	ACH-000615
SKMEL28_SKIN	ZBTB8OS--YARS	3	10	ZBTB8OS	1463	chr1:33116042:-	YARS	25839	chr1:33246746:-	INCL_NON_REF_SPLICE	YES	30	158	0.3	0.08	0.037	0.1232	{Klijn_CCL:Skin=1},ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	SKMEL28_SKIN	0.08	0.3	0.1602	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-CO1	4	5	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	12255	0	0	1	0.0493	0.0616	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL28_SKIN	0	1	0.1109	FALSE	182	97	9	327	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-CO2	5	1	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	46	6	0.12	0.5	0.0616	0.0123	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL28_SKIN	0.12	0.5	0.0739	FALSE	59	21	0	114	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	12464	6076	0	0	0.0616	0.0123	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL28_SKIN	0	0	0.0739	FALSE	63	17	1	58	0	FALSE	ACH-000615
SKMEL28_SKIN	RP11-476K15.1--CTD-2015H3.2	5	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0616	0.0123	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	SKMEL28_SKIN	0.6	1	0.0739	FALSE	0	46	0	73	0	FALSE	ACH-000615
SKMEL28_SKIN	MBP--MT-ND4	5	0	MBP	21743	chr18:74701963:-	MT-ND4	36411	chrM:11247:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	MBP->chr18:74690783-74845639:-,myelin_basic_protein,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SKMEL28_SKIN	1	1	0.0616	FALSE	41	0	0	3	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL28_SKIN	1	1	0.0616	FALSE	63	17	1	58	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ND4--MT-CO1	3	8	MT-ND4	1863	chrM:11622:+	MT-CO1	6015	chrM:6540:+	INCL_NON_REF_SPLICE	NO	16269	26048	0	0	0.037	0.0986	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL28_SKIN	0	0	0.1356	FALSE	19	92	11	16	0	FALSE	ACH-000615
SKMEL28_SKIN	PLXDC1--TAF13	5	0	PLXDC1	27520	chr17:37222840:-	TAF13	38540	chr1:109605627:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SKMEL28_SKIN	1	1	0.0616	TRUE	7	10	0	216	0	FALSE	ACH-000615
SKMEL28_SKIN	SAMD5--SASH1	5	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0616	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SKMEL28_SKIN	1	1	0.0616	TRUE	53	396	64	110	0	FALSE	ACH-000615
SKMEL28_SKIN	NRIP1--AF127936.7	4	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0493	0.0246	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKMEL28_SKIN	0.86	1	0.0739	FALSE	292	1546	117	613	0	FALSE	ACH-000615
SKMEL28_SKIN	ZNF236--VAPA	2	10	ZNF236	1056	chr18:74534618:+	VAPA	50206	chr18:9944921:+	ONLY_REF_SPLICE	YES	0	199	1	0.06	0.0246	0.1232	ZNF236->chr18:74534563-74682683:+,zinc_finger_protein_236,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	SKMEL28_SKIN	0.06	1	0.1478	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	MT-ND6--MT-TE	4	1	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0493	0.0123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL28_SKIN	0.83	1	0.0616	FALSE	499	1288	110	792	0	FALSE	ACH-000615
SKMEL28_SKIN	CCNL2--SSU72	4	0	CCNL2	2096	chr1:1333613:-	SSU72	21649	chr1:1480382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0493	0	CCNL2->chr1:1321091-1334708:-,cyclin_L2,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	SKMEL28_SKIN	1	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	FOXK1--AC007091.1	4	0	FOXK1	5362	chr7:4722499:+	AC007091.1	31246	chr7:19615910:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0493	0	FOXK1->chr7:4683388-4811074:+,forkhead_box_K1,AC007091.1->chr7:19393157-19618229:+	SKMEL28_SKIN	1	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-CO1	3	4	MT-ATP6	1134	chrM:8660:+	MT-CO1	5163	chrM:6385:+	INCL_NON_REF_SPLICE	YES	11669	25020	0	0	0.037	0.0493	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL28_SKIN	0	0	0.0863	FALSE	183	104	9	328	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-CO1	3	4	MT-ATP6	1150	chrM:8676:+	MT-CO1	5195	chrM:6417:+	INCL_NON_REF_SPLICE	NO	12737	24246	0	0	0.037	0.0493	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL28_SKIN	0	0	0.0863	FALSE	183	104	9	328	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-CO2	4	0	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL28_SKIN	1	1	0.0493	FALSE	59	21	0	114	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL28_SKIN	1	1	0.0493	FALSE	462	80	0	856	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0.0493	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL28_SKIN	1	1	0.0863	FALSE	462	80	0	856	0	FALSE	ACH-000615
SKMEL28_SKIN	RP11-153F1.1--RSBN1L	4	0	RP11-153F1.1	1088	chr1:104068018:-	RSBN1L	14980	chr7:77394812:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0493	0	RP11-153F1.1->chr1:103960701-104068105:-,RSBN1L->chr7:77325760-77412339:+,round_spermatid_basic_protein_1_like	SKMEL28_SKIN	1	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-CO1	3	3	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	YES	11277	24487	0	0	0.037	0.037	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL28_SKIN	0	0	0.074	FALSE	183	104	9	328	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-CO2	3	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	96	3	0.06	0.67	0.037	0.037	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL28_SKIN	0.06	0.67	0.074	FALSE	59	21	0	114	0	FALSE	ACH-000615
SKMEL28_SKIN	DDX27--CEP250	2	6	DDX27	9441	chr20:47847652:+	CEP250	30207	chr20:34057715:+	ONLY_REF_SPLICE	YES	285	23	0.03	0.26	0.0246	0.0739	DDX27->DEAD-box_helicase_27,chr20:47835884-47860614:+,CEP250->centrosomal_protein_250,chr20:34042985-34099804:+	SKMEL28_SKIN	0.03	0.26	0.0985	TRUE	0	0	0	1	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-CO1	3	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	11598	26828	0	0	0.037	0.0246	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL28_SKIN	0	0	0.0616	FALSE	183	104	9	328	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-CO1	3	2	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	NO	11246	26674	0	0	0.037	0.0246	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL28_SKIN	0	0	0.0616	FALSE	183	104	9	328	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-CO1	3	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	11561	23957	0	0	0.037	0.0246	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL28_SKIN	0	0	0.0616	FALSE	183	104	9	328	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1516	chrM:9042:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	YES	7052	6192	0	0	0.037	0.0246	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL28_SKIN	0	0	0.0616	FALSE	63	17	1	58	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ND4--MT-CO1	3	2	MT-ND4	1245	chrM:11004:+	MT-CO1	6028	chrM:6553:+	INCL_NON_REF_SPLICE	YES	14015	26986	0	0	0.037	0.0246	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL28_SKIN	0	0	0.0616	FALSE	19	89	11	16	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ND4--MT-CO1	3	2	MT-ND4	1234	chrM:10993:+	MT-CO1	6016	chrM:6541:+	INCL_NON_REF_SPLICE	YES	13890	26180	0	0	0.037	0.0246	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL28_SKIN	0	0	0.0616	FALSE	19	89	11	16	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ND5--MT-ND6	3	2	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	3634	1	0	0.037	0.0246	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SKMEL28_SKIN	0	1	0.0616	FALSE	26	124	4	93	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-TA--MT-TC	3	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0.0246	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL28_SKIN	1	1	0.0616	FALSE	462	80	0	856	0	FALSE	ACH-000615
SKMEL28_SKIN	NPHP4--CERS6	3	2	NPHP4	5785	chr1:6027359:-	CERS6	44441	chr2:169487495:+	ONLY_REF_SPLICE	YES	26	13	0.16	0.28	0.037	0.0246	NPHP4->chr1:5922871-6052533:-,nephronophthisis_4,CERS6->ceramide_synthase_6,chr2:169312372-169631644:+	SKMEL28_SKIN	0.16	0.28	0.0616	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.037	0.0246	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKMEL28_SKIN	0.62	1	0.0616	FALSE	125	705	46	456	0	FALSE	ACH-000615
SKMEL28_SKIN	BLCAP--SRC	1	9	BLCAP	5995	chr20:36147634:-	SRC	18119	chr20:35993607:+	ONLY_REF_SPLICE	YES	376	57	0.03	0.15	0.0123	0.1109	LOCAL_INVERSION:-:+:[86421],BLCAP->Oncogene{Bushman},bladder_cancer_associated_protein,chr20:36120874-36156333:-,SRC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,SRC_proto-oncogene,_non-receptor_tyrosine_kinase,chr20:35973088-36034453:+	SKMEL28_SKIN	0.03	0.15	0.1232	TRUE	0	0	0	1	0	FALSE	ACH-000615
SKMEL28_SKIN	MRPS35--STK38L	1	9	MRPS35	4453	chr12:27872801:+	STK38L	17611	chr12:27449963:+	ONLY_REF_SPLICE	YES	151	5	0.06	0.67	0.0123	0.1109	{Klijn_CCL:Skin=1},MRPS35->chr12:27863706-27909228:+,mitochondrial_ribosomal_protein_S35,STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like	SKMEL28_SKIN	0.06	0.67	0.1232	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-CO2	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	45	5	0.08	0.44	0.037	0.0123	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL28_SKIN	0.08	0.44	0.0493	FALSE	59	21	0	114	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ND6--MT-TE	3	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0.0123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL28_SKIN	1	1	0.0493	FALSE	499	1288	110	792	0	FALSE	ACH-000615
SKMEL28_SKIN	TMEM164--GLMN	3	1	TMEM164	7153	chrX:109388104:+	GLMN	34210	chr1:92712701:-	ONLY_REF_SPLICE	YES	44	23	0.08	0.15	0.037	0.0123	TMEM164->chrX:109245859-109425962:+,transmembrane_protein_164,GLMN->Oncogene{Bushman},chr1:92711959-92764544:-,glomulin,_FKBP_associated_protein	SKMEL28_SKIN	0.08	0.15	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	MAPK8IP1--SBF2	2	4	MAPK8IP1	1271	chr11:45907472:+	SBF2	17003	chr11:10064528:-	ONLY_REF_SPLICE	YES	0	4	1	0.6	0.0246	0.0493	MAPK8IP1->chr11:45907202-45928016:+,mitogen-activated_protein_kinase_8_interacting_protein_1,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	SKMEL28_SKIN	0.6	1	0.0739	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	MBP--MT-ND4L	3	0	MBP	21729	chr18:74701977:-	MT-ND4L	35925	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	MBP->chr18:74690783-74845639:-,myelin_basic_protein,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL28_SKIN	1	1	0.037	FALSE	2	0	0	1	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5387	chrM:2376:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL28_SKIN	1	1	0.037	FALSE	63	17	1	58	0	FALSE	ACH-000615
SKMEL28_SKIN	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1123	chrM:8649:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL28_SKIN	1	1	0.037	FALSE	63	17	1	58	0	FALSE	ACH-000615
SKMEL28_SKIN	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0246	0.0493	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKMEL28_SKIN	0.67	1	0.0739	FALSE	164	806	69	479	0	FALSE	ACH-000615
SKMEL28_SKIN	DDX27--CEP250	2	1	DDX27	8675	chr20:47846886:+	CEP250	31450	chr20:34059875:+	ONLY_REF_SPLICE	NO	265	28	0.01	0.1	0.0246	0.0123	DDX27->DEAD-box_helicase_27,chr20:47835884-47860614:+,CEP250->centrosomal_protein_250,chr20:34042985-34099804:+	SKMEL28_SKIN	0.01	0.1	0.0369	FALSE	0	0	0	1	0	FALSE	ACH-000615
SKMEL28_SKIN	AFF4--HSPA4	2	0	AFF4	1376	chr5:132298951:-	HSPA4	42466	chr5:132422474:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_INVERSION:-:+:[88328],AFF4->AF4/FMR2_family_member_4,Oncogene{Bushman},chr5:132211071-132299326:-,HSPA4->chr5:132387654-132442141:+,heat_shock_protein_family_A_(Hsp70)_member_4	SKMEL28_SKIN	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	C22orf29--DGCR2	2	0	C22orf29	1454	chr22:19841966:-	DGCR2	19904	chr22:19044675:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	C22orf29->chr22:19833661-19842419:-,chromosome_22_open_reading_frame_29,DGCR2->DiGeorge_syndrome_critical_region_gene_2,chr22:19023795-19109967:-	SKMEL28_SKIN	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	RP3-510D11.1--GNAS	2	0	RP3-510D11.1	3450	chr1:9242066:-	GNAS	22287	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	RP3-510D11.1->chr1:9242066-9262678:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SKMEL28_SKIN	1	1	0.0246	TRUE	0	0	0	2	0	TRUE	ACH-000615
SKMEL28_SKIN	TYR--MXI1	2	0	TYR	3538	chr11:88924586:+	MXI1	17518	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	TYR->chr11:88910620-89028927:+,tyrosinase,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	SKMEL28_SKIN	1	1	0.0246	TRUE	0	4	0	4	0	TRUE	ACH-000615
SKMEL28_SKIN	ZBTB8OS--YARS	2	0	ZBTB8OS	1475	chr1:33116030:-	YARS	28603	chr1:33241692:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	{Klijn_CCL:Skin=1},ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	SKMEL28_SKIN	1	1	0.0246	TRUE	0	1	0	1	1	TRUE	ACH-000615
SKMEL28_SKIN	ZNF704--NCL	2	0	ZNF704	3480	chr8:81733609:-	NCL	39069	chr2:232323836:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	ZNF704->chr8:81540686-81787016:-,zinc_finger_protein_704,NCL->chr2:232318242-232348352:-,nucleolin	SKMEL28_SKIN	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	1	7	0.8	0.36	0.0123	0.037	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL28_SKIN	0.36	0.8	0.0493	TRUE	274	363	69	150	0	FALSE	ACH-000615
SKMEL28_SKIN	SLC39A11--LINC00511	1	2	SLC39A11	10840	chr17:70943870:-	LINC00511	30134	chr17:70614703:-	ONLY_REF_SPLICE	NO	127	0	0.02	1	0.0123	0.0246	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	SKMEL28_SKIN	0.02	1	0.0369	FALSE	0	0	0	1	0	FALSE	ACH-000615
SKMEL28_SKIN	INPP5F--TIAL1	1	1	INPP5F	15461	chr10:121571467:+	TIAL1	31727	chr10:121347760:-	ONLY_REF_SPLICE	YES	223	21	0.01	0.09	0.0123	0.0123	INPP5F->chr10:121485609-121588652:+,inositol_polyphosphate-5-phosphatase_F,TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-	SKMEL28_SKIN	0.01	0.09	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000615
SKMEL28_SKIN	NPHP4--CERS6	1	1	NPHP4	5785	chr1:6027359:-	CERS6	45499	chr2:169547544:+	ONLY_REF_SPLICE	NO	26	11	0.07	0.15	0.0123	0.0123	NPHP4->chr1:5922871-6052533:-,nephronophthisis_4,CERS6->ceramide_synthase_6,chr2:169312372-169631644:+	SKMEL28_SKIN	0.07	0.15	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000615
SKMEL28_SKIN	NQO2--PTTG1	1	1	NQO2	9651	chr6:3006793:+	PTTG1	19304	chr5:159849309:+	ONLY_REF_SPLICE	YES	176	117	0.01	0.02	0.0123	0.0123	NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+,PTTG1->Oncogene{Bushman},chr5:159848829-159855748:+,pituitary_tumor-transforming_1	SKMEL28_SKIN	0.01	0.02	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000615
SKMEL28_SKIN	NRIP1--IGSF11	1	1	NRIP1	3459	chr21:16386665:-	IGSF11	26551	chr3:118649122:-	ONLY_REF_SPLICE	YES	3	107	0.4	0.02	0.0123	0.0123	NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,IGSF11->chr3:118619404-118864915:-,immunoglobulin_superfamily_member_11	SKMEL28_SKIN	0.02	0.4	0.0246	TRUE	0	0	0	1	0	FALSE	ACH-000615
SKMEL28_SKIN	PTP4A1--TMEM30A	1	1	PTP4A1	4040	chr6:64282624:+	TMEM30A	18822	chr6:75977464:-	ONLY_REF_SPLICE	NO	401	263	0	0.01	0.0123	0.0123	PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1,TMEM30A->chr6:75962640-75994684:-,transmembrane_protein_30A	SKMEL28_SKIN	0	0.01	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000615
SKMEL28_SKIN	TSSC1--RNF144A	1	1	TSSC1	4895	chr2:3341788:-	RNF144A	29448	chr2:7137047:+	ONLY_REF_SPLICE	YES	69	130	0.03	0.02	0.0123	0.0123	TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1,RNF144A->chr2:7057523-7208417:+,ring_finger_protein_144A	SKMEL28_SKIN	0.02	0.03	0.0246	TRUE	0	0	0	1	0	FALSE	ACH-000615
MDAMB453_BREAST	RGL2--PTMA	157	0	RGL2	1870	chr6:33266232:-	PTMA	16689	chr2:232576651:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.4813	0	RGL2->chr6:33259431-33267101:-,ral_guanine_nucleotide_dissociation_stimulator_like_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MDAMB453_BREAST	1	1	2.4813	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MECP2--TMLHE	101	107	MECP2	3066	chrX:153357642:-	TMLHE	28468	chrX:154754293:-	ONLY_REF_SPLICE	YES	155	94	0.57	0.69	1.5963	1.6911	MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2,TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon	MDAMB453_BREAST	0.57	0.69	3.2874	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MECP2--TMLHE	108	25	MECP2	1152	chrX:153363061:-	TMLHE	28468	chrX:154754293:-	ONLY_REF_SPLICE	YES	20	94	0.87	0.59	1.7069	0.3951	MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2,TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon	MDAMB453_BREAST	0.59	0.87	2.102	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	TIMM23B--LINC00843	53	40	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8376	0.6322	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MDAMB453_BREAST	0.99	1	1.4698	TRUE	508	994	45	981	0	FALSE	ACH-000910
MDAMB453_BREAST	RP11-453F18__B.1--SART1	41	14	RP11-453F18__B.1	7381	chrX:130917915:-	SART1	20266	chr11:65731545:+	ONLY_REF_SPLICE	YES	13	83	0.81	0.4	0.648	0.2213	RP11-453F18__B.1->chrX:130836678-130964671:-,SART1->chr11:65729160-65747299:+,squamous_cell_carcinoma_antigen_recognized_by_T-cells_1	MDAMB453_BREAST	0.4	0.81	0.8693	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	FOXP1--EIF4E3	35	28	FOXP1	2824	chr3:71630700:-	EIF4E3	51235	chr3:71777774:-	ONLY_REF_SPLICE	YES	3	1	0.95	0.98	0.5532	0.4425	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:3],LOCAL_REARRANGEMENT:-:[91427],FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,EIF4E3->chr3:71724567-71803924:-,eukaryotic_translation_initiation_factor_4E_family_member_3	MDAMB453_BREAST	0.95	0.98	0.9957	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	TIMM23--RP11-464F9.1	37	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	297	8	0.12	0.84	0.5848	0.0632	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MDAMB453_BREAST	0.12	0.84	0.648	TRUE	519	3926	326	965	0	FALSE	ACH-000910
MDAMB453_BREAST	ZNF654--HMGB2	34	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5374	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MDAMB453_BREAST	1	1	0.5374	TRUE	0	0	0	518	0	FALSE	ACH-000910
MDAMB453_BREAST	RGL2--PTMA	32	0	RGL2	1870	chr6:33266232:-	PTMA	16114	chr2:232576076:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5057	0	RGL2->chr6:33259431-33267101:-,ral_guanine_nucleotide_dissociation_stimulator_like_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MDAMB453_BREAST	1	1	0.5057	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	30	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	14937	7	0	0.82	0.4741	0.0474	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0	0.82	0.5215	FALSE	230	193	14	283	0	FALSE	ACH-000910
MDAMB453_BREAST	UNK--ITGB4	19	47	UNK	16981	chr17:73819501:+	ITGB4	32465	chr17:73732607:+	INCL_NON_REF_SPLICE	YES	74	30	0.47	0.69	0.3003	0.7428	LOCAL_REARRANGEMENT:+:[26782],UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	MDAMB453_BREAST	0.47	0.69	1.0431	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MT-TA--MT-TC	29	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4583	0.0632	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB453_BREAST	1	1	0.5215	FALSE	462	80	0	856	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ND4L	4	98	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	76	0	0.57	1	0.0632	1.5489	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB453_BREAST	0.57	1	1.6121	FALSE	344	827	44	306	0	FALSE	ACH-000910
MDAMB453_BREAST	SPSB2--NOP2	25	9	SPSB2	8223	chr12:6980121:-	NOP2	14897	chr12:6673414:-	INCL_NON_REF_SPLICE	YES	0	118	1	0.22	0.3951	0.1422	SPSB2->chr12:6980099-6998522:-,splA/ryanodine_receptor_domain_and_SOCS_box_containing_2,NOP2->NOP2_nucleolar_protein,chr12:6666029-6677857:-	MDAMB453_BREAST	0.22	1	0.5373	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	TCF12--NKAIN2	22	14	TCF12	13432	chr15:57458664:+	NKAIN2	52379	chr6:125139533:+	ONLY_REF_SPLICE	YES	63	0	0.36	1	0.3477	0.2213	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,NKAIN2->Na+/K+_transporting_ATPase_interacting_2,Oncogene{Bushman},chr6:124125286-125146803:+	MDAMB453_BREAST	0.36	1	0.569	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ND4L	3	87	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	19	0	0.83	1	0.0474	1.375	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB453_BREAST	0.83	1	1.4224	FALSE	344	826	44	306	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ND4L	4	80	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	11	1	0.88	0.99	0.0632	1.2644	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB453_BREAST	0.88	0.99	1.3276	FALSE	344	826	44	306	0	FALSE	ACH-000910
MDAMB453_BREAST	FOXP1--EIF4E3	18	16	FOXP1	2824	chr3:71630700:-	EIF4E3	53567	chr3:71759635:-	ONLY_REF_SPLICE	YES	3	28	0.92	0.55	0.2845	0.2529	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:3],LOCAL_REARRANGEMENT:-:[91427],FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,EIF4E3->chr3:71724567-71803924:-,eukaryotic_translation_initiation_factor_4E_family_member_3	MDAMB453_BREAST	0.55	0.92	0.5374	TRUE	0	1	0	1	1	TRUE	ACH-000910
MDAMB453_BREAST	SPG11--CTD-2008A1.2	17	11	SPG11	8955	chr15:44925703:-	CTD-2008A1.2	53379	chr15:45142585:-	ONLY_REF_SPLICE	YES	72	0	0.28	1	0.2687	0.1739	SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),CTD-2008A1.2->chr15:45118569-45176892:-	MDAMB453_BREAST	0.28	1	0.4426	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ND4L	3	66	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	11	1	0.86	0.99	0.0474	1.0431	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB453_BREAST	0.86	0.99	1.0905	FALSE	344	821	44	306	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ATP6--MT-CO2	18	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	61	40	0.27	0.37	0.2845	0.079	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MDAMB453_BREAST	0.27	0.37	0.3635	FALSE	59	21	0	114	0	FALSE	ACH-000910
MDAMB453_BREAST	RGL2--PTMA	19	0	RGL2	6675	chr6:33261427:-	PTMA	13303	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3003	0	RGL2->chr6:33259431-33267101:-,ral_guanine_nucleotide_dissociation_stimulator_like_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MDAMB453_BREAST	1	1	0.3003	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RGL2--PTMA	18	0	RGL2	1870	chr6:33266232:-	PTMA	16662	chr2:232576624:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2845	0	RGL2->chr6:33259431-33267101:-,ral_guanine_nucleotide_dissociation_stimulator_like_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MDAMB453_BREAST	1	1	0.2845	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RGL2--PTMA	17	0	RGL2	1870	chr6:33266232:-	PTMA	16674	chr2:232576636:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2687	0	RGL2->chr6:33259431-33267101:-,ral_guanine_nucleotide_dissociation_stimulator_like_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MDAMB453_BREAST	1	1	0.2687	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MYO15B--MAP3K3	13	13	MYO15B	8655	chr17:73592636:+	MAP3K3	46650	chr17:61762877:+	ONLY_REF_SPLICE	YES	1	23	0.96	0.53	0.2055	0.2055	MYO15B->chr17:73584139-73622929:+,myosin_XVB,MAP3K3->chr17:61699775-61773663:+,mitogen-activated_protein_kinase_kinase_kinase_3	MDAMB453_BREAST	0.53	0.96	0.411	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RP11-453F18__B.1--SART1	12	14	RP11-453F18__B.1	10641	chrX:130889626:-	SART1	20266	chr11:65731545:+	ONLY_REF_SPLICE	YES	21	83	0.55	0.24	0.1897	0.2213	RP11-453F18__B.1->chrX:130836678-130964671:-,SART1->chr11:65729160-65747299:+,squamous_cell_carcinoma_antigen_recognized_by_T-cells_1	MDAMB453_BREAST	0.24	0.55	0.411	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RGL2--PTMA	15	0	RGL2	1870	chr6:33266232:-	PTMA	16659	chr2:232576621:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2371	0	RGL2->chr6:33259431-33267101:-,ral_guanine_nucleotide_dissociation_stimulator_like_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MDAMB453_BREAST	1	1	0.2371	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	UBA1--PFKFB1	13	8	UBA1	8203	chrX:47061009:+	PFKFB1	33848	chrX:54964157:-	ONLY_REF_SPLICE	YES	354	0	0.06	1	0.2055	0.1264	UBA1->chrX:47050260-47074527:+,ubiquitin_like_modifier_activating_enzyme_1,PFKFB1->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_1,chrX:54959394-55024967:-	MDAMB453_BREAST	0.06	1	0.3319	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	EMB--SLC8A1-AS1	13	7	EMB	9628	chr5:49698120:-	SLC8A1-AS1	40813	chr2:40478824:+	ONLY_REF_SPLICE	YES	7	0	0.74	1	0.2055	0.1106	EMB->chr5:49692026-49739082:-,embigin,SLC8A1-AS1->SLC8A1_antisense_RNA_1,chr2:40013593-40482349:+	MDAMB453_BREAST	0.74	1	0.3161	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	HSP90AB1--MT-RNR2	13	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3845	0	0	1	0.2055	0.0474	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MDAMB453_BREAST	0	1	0.2529	FALSE	13	9	0	364	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ATP6--MT-CO2	13	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	60	32	0.21	0.33	0.2055	0.0474	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MDAMB453_BREAST	0.21	0.33	0.2529	FALSE	59	21	0	114	0	FALSE	ACH-000910
MDAMB453_BREAST	SERF2--CTD-2192J16.22	11	10	SERF2	6109	chr15:44085993:+	CTD-2192J16.22	19016	chr19:12754774:-	INCL_NON_REF_SPLICE	YES	3607	0	0.01	1	0.1739	0.158	SERF2->chr15:44069285-44094787:+,small_EDRK-rich_factor_2,CTD-2192J16.22->chr19:12754645-12759211:-	MDAMB453_BREAST	0.01	1	0.3319	TRUE	0	0	0	2	0	FALSE	ACH-000910
MDAMB453_BREAST	NRIP1--AF127936.7	12	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.79	1	0.1897	0.0474	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB453_BREAST	0.79	1	0.2371	FALSE	292	1546	117	613	0	FALSE	ACH-000910
MDAMB453_BREAST	PLXDC1--TAF13	12	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1897	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	MDAMB453_BREAST	1	1	0.1897	TRUE	7	10	0	216	0	FALSE	ACH-000910
MDAMB453_BREAST	PCBP2--MTND2P28	11	2	PCBP2	11835	chr12:53856343:+	MTND2P28	25766	chr1:565066:+	INCL_NON_REF_SPLICE	YES	2530	0	0.01	1	0.1739	0.0316	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	MDAMB453_BREAST	0.01	1	0.2055	TRUE	0	0	0	9	0	FALSE	ACH-000910
MDAMB453_BREAST	ZNF652--ABCC3	11	0	ZNF652	1565	chr17:47439271:-	ABCC3	47489	chr17:48768453:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1739	0	ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652,ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+	MDAMB453_BREAST	1	1	0.1739	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	FAM172A--KIAA0825	10	3	FAM172A	4518	chr5:93386436:-	KIAA0825	50323	chr5:93489829:-	ONLY_REF_SPLICE	YES	21	0	0.38	1	0.158	0.0474	LOCAL_REARRANGEMENT:-:[41267],FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,KIAA0825->KIAA0825,chr5:93488671-93954309:-	MDAMB453_BREAST	0.38	1	0.2054	TRUE	0	1	0	2	1	TRUE	ACH-000910
MDAMB453_BREAST	HSP90AB1--MT-RNR2	10	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3889	0	0	1	0.158	0.0474	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MDAMB453_BREAST	0	1	0.2054	FALSE	13	9	0	364	0	FALSE	ACH-000910
MDAMB453_BREAST	MECP2--TMLHE	1	38	MECP2	3066	chrX:153357642:-	TMLHE	29830	chrX:154743926:-	ONLY_REF_SPLICE	YES	155	125	0.2	0.24	0.0158	0.6006	MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2,TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon	MDAMB453_BREAST	0.2	0.24	0.6164	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ND4L	4	26	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0632	0.4109	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB453_BREAST	0.91	1	0.4741	FALSE	344	821	44	306	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ND4L	3	29	MT-ND4	1269	chrM:11028:+	MT-ND4L	5644	chrM:10735:+	INCL_NON_REF_SPLICE	YES	148	0	0.18	1	0.0474	0.4583	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB453_BREAST	0.18	1	0.5057	FALSE	344	827	44	306	0	FALSE	ACH-000910
MDAMB453_BREAST	C15orf57--CBX3	8	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	81	57	0.16	0.21	0.1264	0.1106	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MDAMB453_BREAST	0.16	0.21	0.237	TRUE	267	562	48	632	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	6	12	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	21363	0	0	1	0.0948	0.1897	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0	1	0.2845	FALSE	231	217	16	283	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ND4L	6	11	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1188	0	0.01	1	0.0948	0.1739	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB453_BREAST	0.01	1	0.2687	FALSE	344	827	44	306	0	FALSE	ACH-000910
MDAMB453_BREAST	SERF2--CTD-2192J16.22	5	15	SERF2	6131	chr15:44086015:+	CTD-2192J16.22	19035	chr19:12754755:-	INCL_NON_REF_SPLICE	YES	3015	0	0.01	1	0.079	0.2371	SERF2->chr15:44069285-44094787:+,small_EDRK-rich_factor_2,CTD-2192J16.22->chr19:12754645-12759211:-	MDAMB453_BREAST	0.01	1	0.3161	TRUE	0	0	0	2	0	FALSE	ACH-000910
MDAMB453_BREAST	NRIP1--AF127936.7	6	10	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	24	0	0.4	1	0.0948	0.158	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB453_BREAST	0.4	1	0.2528	FALSE	164	806	69	479	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ATP6--MT-CO2	8	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1264	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MDAMB453_BREAST	1	1	0.1264	FALSE	59	21	0	114	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	6	8	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	24591	770	0	0.02	0.0948	0.1264	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0	0.02	0.2212	FALSE	231	217	16	283	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-TA--MT-TC	7	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1106	0.0632	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB453_BREAST	1	1	0.1738	FALSE	462	80	0	856	0	FALSE	ACH-000910
MDAMB453_BREAST	RGL2--PTMA	8	0	RGL2	1871	chr6:33266231:-	PTMA	16648	chr2:232576610:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1264	0	RGL2->chr6:33259431-33267101:-,ral_guanine_nucleotide_dissociation_stimulator_like_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MDAMB453_BREAST	1	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	FOXP1--EIF4E3	7	3	FOXP1	1419	chr3:71632722:-	EIF4E3	51235	chr3:71777774:-	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.1106	0.0474	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:3],LOCAL_REARRANGEMENT:-:[91427],FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,EIF4E3->chr3:71724567-71803924:-,eukaryotic_translation_initiation_factor_4E_family_member_3	MDAMB453_BREAST	0.91	1	0.158	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RP11-453F18__B.1--SART1	4	15	RP11-453F18__B.1	7381	chrX:130917915:-	SART1	20198	chr11:65731477:+	ONLY_REF_SPLICE	YES	13	82	0.59	0.19	0.0632	0.2371	RP11-453F18__B.1->chrX:130836678-130964671:-,SART1->chr11:65729160-65747299:+,squamous_cell_carcinoma_antigen_recognized_by_T-cells_1	MDAMB453_BREAST	0.19	0.59	0.3003	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	4	14	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	18374	0	0	1	0.0632	0.2213	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0	1	0.2845	FALSE	231	217	16	283	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	5	10	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20140	86	0	0.15	0.079	0.158	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0	0.15	0.237	FALSE	231	217	16	283	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ND4L	3	18	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1803	0	0.01	1	0.0474	0.2845	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB453_BREAST	0.01	1	0.3319	FALSE	344	827	44	306	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND6--MT-TE	7	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1106	0.0316	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB453_BREAST	1	1	0.1422	FALSE	499	1288	110	792	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	5	9	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	21992	0	0	1	0.079	0.1422	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0	1	0.2212	FALSE	231	217	16	283	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	6	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15028	8	0	0.53	0.0948	0.0474	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0	0.53	0.1422	FALSE	230	198	14	283	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	4	11	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	21362	8	0	0.65	0.0632	0.1739	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0	0.65	0.2371	FALSE	231	217	16	283	0	FALSE	ACH-000910
MDAMB453_BREAST	GALK1--TRIM47	5	6	GALK1	4008	chr17:73758785:-	TRIM47	11621	chr17:73872894:-	ONLY_REF_SPLICE	YES	77	1	0.12	0.92	0.079	0.0948	GALK1->chr17:73747675-73761792:-,galactokinase_1,TRIM47->chr17:73870242-73874656:-,tripartite_motif_containing_47	MDAMB453_BREAST	0.12	0.92	0.1738	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ND4L	4	10	MT-ND4	1818	chrM:11577:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	12233	0	0	1	0.0632	0.158	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB453_BREAST	0	1	0.2212	FALSE	344	827	44	306	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ATP6--MT-CO2	5	5	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	61	26	0.14	0.28	0.079	0.079	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MDAMB453_BREAST	0.14	0.28	0.158	FALSE	59	21	0	114	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	5	5	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17761	8	0	0.56	0.079	0.079	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0	0.56	0.158	FALSE	231	205	14	283	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	4	9	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	22769	0	0	1	0.0632	0.1422	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0	1	0.2054	FALSE	231	217	16	283	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ND4L	5	5	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	177	0	0.05	1	0.079	0.079	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB453_BREAST	0.05	1	0.158	FALSE	344	827	44	306	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND6--MT-TE	5	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.079	0.079	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB453_BREAST	1	1	0.158	FALSE	499	1288	110	792	0	FALSE	ACH-000910
MDAMB453_BREAST	TBC1D22A--TTC38	5	5	TBC1D22A	10096	chr22:47193517:+	TTC38	26747	chr22:46664411:+	ONLY_REF_SPLICE	YES	66	3	0.13	0.77	0.079	0.079	TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,TTC38->chr22:46663858-46689905:+,tetratricopeptide_repeat_domain_38	MDAMB453_BREAST	0.13	0.77	0.158	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MT-ATP6--MT-CO2	6	0	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0948	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MDAMB453_BREAST	1	1	0.0948	FALSE	59	21	0	114	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ATP6--MT-CO2	6	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0948	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MDAMB453_BREAST	1	1	0.0948	FALSE	59	21	0	114	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	3	12	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2747	86	0.01	0.15	0.0474	0.1897	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0.01	0.15	0.2371	FALSE	216	209	16	281	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	3	11	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	20879	0	0	1	0.0474	0.1739	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0	1	0.2213	FALSE	231	217	16	283	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND6--MT-TE	3	11	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0.1739	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB453_BREAST	1	1	0.2213	FALSE	499	1288	110	792	0	FALSE	ACH-000910
MDAMB453_BREAST	SLC35B1--PRKCA	4	7	SLC35B1	7157	chr17:47780220:-	PRKCA	25872	chr17:64728806:+	ONLY_REF_SPLICE	YES	226	0	0.05	1	0.0632	0.1106	SLC35B1->chr17:47778305-47786376:-,solute_carrier_family_35_member_B1,PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha	MDAMB453_BREAST	0.05	1	0.1738	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	C1orf194--UQCR10	5	1	C1orf194	3284	chr1:109650635:-	UQCR10	8361	chr22:30163372:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.079	0.0158	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.41%,GTEx_FI:{Testis=[count:16=pct:15.2],Pituitary=[count:4=pct:7.7],Lung=[count:4=pct:2.4],Brain=[count:3=pct:0.5],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Fallopian_Tube=[count:1=pct:16.7],Thyroid=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=13;pct=0.15%;dist=Testis=12,Adipose_-_Subcutaneous=1},C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	MDAMB453_BREAST	1	1	0.0948	TRUE	26	6	0	14	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ATP6--MT-CO2	4	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	61	25	0.13	0.26	0.0632	0.079	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MDAMB453_BREAST	0.13	0.26	0.1422	FALSE	59	21	0	114	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ATP6--MT-CO2	5	1	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	78	127	0.07	0.05	0.079	0.0158	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MDAMB453_BREAST	0.05	0.07	0.0948	FALSE	59	21	0	114	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND6--MT-TE	4	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0.079	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB453_BREAST	1	1	0.1422	FALSE	499	1288	110	792	0	FALSE	ACH-000910
MDAMB453_BREAST	CLTC--RP11-615I2.2	5	0	CLTC	10692	chr17:57738974:+	RP11-615I2.2	38346	chr16:68679653:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.079	0	CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RP11-615I2.2->chr16:68679283-68680071:-	MDAMB453_BREAST	1	1	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	3	8	MT-ND4	1447	chrM:11206:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22861	8	0	0.58	0.0474	0.1264	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0	0.58	0.1738	FALSE	231	217	16	283	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	3	8	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22684	86	0	0.11	0.0474	0.1264	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0	0.11	0.1738	FALSE	231	217	16	283	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	3	8	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	YES	21362	888	0	0.01	0.0474	0.1264	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0	0.01	0.1738	FALSE	231	217	16	283	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.079	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB453_BREAST	1	1	0.079	FALSE	499	1288	110	792	0	FALSE	ACH-000910
MDAMB453_BREAST	NRIP1--AF127936.7	4	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.32	1	0.0632	0.0632	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB453_BREAST	0.32	1	0.1264	FALSE	125	705	46	456	0	FALSE	ACH-000910
MDAMB453_BREAST	RP11-123O10.4--GRIP1	5	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.079	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MDAMB453_BREAST	1	1	0.079	FALSE	416	2512	207	587	0	FALSE	ACH-000910
MDAMB453_BREAST	ZNF652--ABCC3	5	0	ZNF652	1061	chr17:47439775:-	ABCC3	47489	chr17:48768453:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.079	0	ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652,ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+	MDAMB453_BREAST	1	1	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	UBA1--PFKFB1	4	3	UBA1	8203	chrX:47061009:+	PFKFB1	34978	chrX:54961442:-	ONLY_REF_SPLICE	YES	354	1	0.02	0.88	0.0632	0.0474	UBA1->chrX:47050260-47074527:+,ubiquitin_like_modifier_activating_enzyme_1,PFKFB1->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_1,chrX:54959394-55024967:-	MDAMB453_BREAST	0.02	0.88	0.1106	TRUE	0	0	0	1	0	FALSE	ACH-000910
MDAMB453_BREAST	FBXO36--RIF1	4	2	FBXO36	1308	chr2:230787325:+	RIF1	29477	chr2:152301852:+	ONLY_REF_SPLICE	YES	1	28	0.86	0.18	0.0632	0.0316	FBXO36->F-box_protein_36,chr2:230787018-230877825:+,RIF1->chr2:152266397-152364527:+,replication_timing_regulatory_factor_1	MDAMB453_BREAST	0.18	0.86	0.0948	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	3	6	MT-ND4	1311	chrM:11070:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	21399	0	0	1	0.0474	0.0948	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0	1	0.1422	FALSE	231	205	14	283	0	FALSE	ACH-000910
MDAMB453_BREAST	RP11-453F18__B.1--SART1	1	14	RP11-453F18__B.1	12864	chrX:130845679:-	SART1	20266	chr11:65731545:+	ONLY_REF_SPLICE	NO	4	83	0.79	0.15	0.0158	0.2213	RP11-453F18__B.1->chrX:130836678-130964671:-,SART1->chr11:65729160-65747299:+,squamous_cell_carcinoma_antigen_recognized_by_T-cells_1	MDAMB453_BREAST	0.15	0.79	0.2371	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MT-ATP6--MT-CO2	3	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	61	25	0.12	0.24	0.0474	0.079	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MDAMB453_BREAST	0.12	0.24	0.1264	FALSE	59	21	0	114	0	FALSE	ACH-000910
MDAMB453_BREAST	RP11-453F18__B.1--SART1	1	13	RP11-453F18__B.1	7381	chrX:130917915:-	SART1	20707	chr11:65731986:+	ONLY_REF_SPLICE	YES	13	130	0.52	0.1	0.0158	0.2055	RP11-453F18__B.1->chrX:130836678-130964671:-,SART1->chr11:65729160-65747299:+,squamous_cell_carcinoma_antigen_recognized_by_T-cells_1	MDAMB453_BREAST	0.1	0.52	0.2213	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	DSCR3--TTC3	4	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0632	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	MDAMB453_BREAST	1	1	0.0632	TRUE	0	9	0	44	1	FALSE	ACH-000910
MDAMB453_BREAST	MT-ATP6--MT-CO2	3	4	MT-ATP6	1516	chrM:9042:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	8	127	0.47	0.05	0.0474	0.0632	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MDAMB453_BREAST	0.05	0.47	0.1106	FALSE	59	21	0	114	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ATP6--MT-CO2	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MDAMB453_BREAST	1	1	0.0632	FALSE	59	21	0	114	0	FALSE	ACH-000910
MDAMB453_BREAST	EMB--SLC8A1-AS1	3	3	EMB	4209	chr5:49723978:-	SLC8A1-AS1	40813	chr2:40478824:+	ONLY_REF_SPLICE	YES	17	0	0.26	1	0.0474	0.0474	EMB->chr5:49692026-49739082:-,embigin,SLC8A1-AS1->SLC8A1_antisense_RNA_1,chr2:40013593-40482349:+	MDAMB453_BREAST	0.26	1	0.0948	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	3	3	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	17629	1139	0	0.01	0.0474	0.0474	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0	0.01	0.0948	FALSE	231	205	14	283	0	FALSE	ACH-000910
MDAMB453_BREAST	FOXP1-IT1--EIF4E3	3	2	FOXP1-IT1	2710	chr3:71621899:-	EIF4E3	11089	chr3:71777774:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.83	0.0474	0.0316	FOXP1-IT1->FOXP1_intronic_transcript_1,chr3:71619406-71623608:-,EIF4E3->chr3:71724567-71803924:-,eukaryotic_translation_initiation_factor_4E_family_member_3	MDAMB453_BREAST	0.83	1	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	ZNF736--CHMP1A	3	2	ZNF736	8361	chr7:63797360:+	CHMP1A	24290	chr16:89713739:-	ONLY_REF_SPLICE	YES	18	307	0.22	0.02	0.0474	0.0316	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adipose_Tissue=[count:2=pct:0.7],Breast=[count:2=pct:1.8],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=25;pct=0.29%;dist=Thyroid=4,Cells_-_Transformed_fibroblasts=3,Breast_-_Mammary_Tissue=2,Esophagus_-_Mucosa=2,Ovary=1,Pancreas=1,Lung=1,Vagina=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Colon_-_Sigmoid=1,Testis=1,Colon_-_Transverse=1},ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	MDAMB453_BREAST	0.02	0.22	0.079	TRUE	10	14	2	10	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ATP6--MT-CO2	3	1	MT-ATP6	1174	chrM:8700:+	MT-CO2	4986	chrM:7890:+	INCL_NON_REF_SPLICE	YES	63	109	0.06	0.04	0.0474	0.0158	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MDAMB453_BREAST	0.04	0.06	0.0632	FALSE	59	21	0	114	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ATP8	3	1	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	17430	1924	0	0	0.0474	0.0158	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB453_BREAST	0	0	0.0632	FALSE	231	205	14	283	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND4--MT-ND4L	3	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0474	0.0158	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB453_BREAST	1	1	0.0632	FALSE	344	821	44	306	0	FALSE	ACH-000910
MDAMB453_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB453_BREAST	1	1	0.0474	FALSE	499	1288	110	792	0	FALSE	ACH-000910
MDAMB453_BREAST	RGL2--PTMA	3	0	RGL2	1870	chr6:33266232:-	PTMA	16145	chr2:232576107:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	RGL2->chr6:33259431-33267101:-,ral_guanine_nucleotide_dissociation_stimulator_like_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MDAMB453_BREAST	1	1	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	ASPH--FUS	2	3	ASPH	8053	chr8:62593527:-	FUS	55904	chr16:31199646:+	ONLY_REF_SPLICE	YES	2339	1073	0	0	0.0316	0.0474	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	MDAMB453_BREAST	0	0	0.079	FALSE	0	0	0	4	0	FALSE	ACH-000910
MDAMB453_BREAST	TCF12--NKAIN2	1	7	TCF12	7716	chr15:57384089:+	NKAIN2	52379	chr6:125139533:+	ONLY_REF_SPLICE	YES	76	0	0.1	1	0.0158	0.1106	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,NKAIN2->Na+/K+_transporting_ATPase_interacting_2,Oncogene{Bushman},chr6:124125286-125146803:+	MDAMB453_BREAST	0.1	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	METTL15--RP11-115J23.1	2	2	METTL15	3728	chr11:28135151:+	RP11-115J23.1	24968	chr11:29065992:+	ONLY_REF_SPLICE	YES	28	0	0.12	1	0.0316	0.0316	METTL15->chr11:28129795-28355054:+,methyltransferase_like_15,RP11-115J23.1->chr11:28724162-29085368:+	MDAMB453_BREAST	0.12	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	FOXP1--EIF4E3	1	5	FOXP1	2824	chr3:71630700:-	EIF4E3	57863	chr3:71739316:-	ONLY_REF_SPLICE	NO	3	214	0.67	0.03	0.0158	0.079	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:3],LOCAL_REARRANGEMENT:-:[91427],FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,EIF4E3->chr3:71724567-71803924:-,eukaryotic_translation_initiation_factor_4E_family_member_3	MDAMB453_BREAST	0.03	0.67	0.0948	TRUE	0	0	0	1	0	FALSE	ACH-000910
MDAMB453_BREAST	SPG11--CTD-2008A1.2	1	5	SPG11	7822	chr15:44941064:-	CTD-2008A1.2	53379	chr15:45142585:-	ONLY_REF_SPLICE	YES	47	0	0.11	1	0.0158	0.079	SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),CTD-2008A1.2->chr15:45118569-45176892:-	MDAMB453_BREAST	0.11	1	0.0948	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	AGBL4--AGBL4-IT1	2	0	AGBL4	3399	chr1:50162985:-	AGBL4-IT1	30507	chr1:49840016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	NEIGHBORS_OVERLAP:-:-:[97884],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,AGBL4-IT1->AGBL4_intronic_transcript_1,chr1:49839873-49937757:-	MDAMB453_BREAST	1	1	0.0316	FALSE	75	131	5	14	0	FALSE	ACH-000910
MDAMB453_BREAST	AKNA--C9orf91	2	0	AKNA	13013	chr9:117122176:-	C9orf91	34543	chr9:117379398:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	AKNA->AT-hook_transcription_factor,chr9:117096436-117156685:-,C9orf91->chr9:117373486-117408702:+,chromosome_9_open_reading_frame_91	MDAMB453_BREAST	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	C17orf76-AS1--RHOA	2	0	C17orf76-AS1	1593	chr17:16342728:+	RHOA	16477	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	C17orf76-AS1->chr17:16342136-16381992:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	MDAMB453_BREAST	1	1	0.0316	TRUE	0	0	0	4	0	TRUE	ACH-000910
MDAMB453_BREAST	CASD1--RGS3	1	4	CASD1	19451	chr7:94183887:+	RGS3	34838	chr9:116258066:+	ONLY_REF_SPLICE	YES	56	31	0.08	0.14	0.0158	0.0632	CASD1->CAS1_domain_containing_1,chr7:94138531-94186331:+,RGS3->Oncogene{Bushman},chr9:116207011-116360018:+,regulator_of_G-protein_signaling_3	MDAMB453_BREAST	0.08	0.14	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	LITAF--EMP2	2	0	LITAF	13702	chr16:11647389:-	EMP2	23025	chr16:10641534:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,EMP2->chr16:10622279-10674555:-,epithelial_membrane_protein_2	MDAMB453_BREAST	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	MB21D2--FGF12	2	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	MDAMB453_BREAST	1	1	0.0316	FALSE	0	17	0	46	0	FALSE	ACH-000910
MDAMB453_BREAST	MMP17--NOC4L	2	0	MMP17	1261	chr12:132313198:+	NOC4L	19756	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_FI:{Brain=[count:15=pct:2.3]},MMP17->chr12:132312938-132336328:+,matrix_metallopeptidase_17,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	MDAMB453_BREAST	1	1	0.0316	TRUE	7	45	0	7	0	FALSE	ACH-000910
MDAMB453_BREAST	WDR89--PPP2R5E	2	0	WDR89	1058	chr14:64108522:-	PPP2R5E	23795	chr14:63856449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	NEIGHBORS[53665],WDR89->WD_repeat_domain_89,chr14:64063757-64108579:-,PPP2R5E->chr14:63838075-64010092:-,protein_phosphatase_2_regulatory_subunit_B',_epsilon	MDAMB453_BREAST	1	1	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000910
MDAMB453_BREAST	FAM172A--KIAA0825	1	3	FAM172A	6776	chr5:93294482:-	KIAA0825	50323	chr5:93489829:-	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0158	0.0474	LOCAL_REARRANGEMENT:-:[41267],FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,KIAA0825->KIAA0825,chr5:93488671-93954309:-	MDAMB453_BREAST	0.18	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	METTL15--RP11-115J23.1	1	3	METTL15	3728	chr11:28135151:+	RP11-115J23.1	23893	chr11:29059289:+	ONLY_REF_SPLICE	YES	28	0	0.12	1	0.0158	0.0474	METTL15->chr11:28129795-28355054:+,methyltransferase_like_15,RP11-115J23.1->chr11:28724162-29085368:+	MDAMB453_BREAST	0.12	1	0.0632	TRUE	0	0	0	2	0	TRUE	ACH-000910
MDAMB453_BREAST	MYO15B--MAP3K3	1	3	MYO15B	5783	chr17:73588921:+	MAP3K3	46650	chr17:61762877:+	ONLY_REF_SPLICE	NO	21	23	0.16	0.15	0.0158	0.0474	MYO15B->chr17:73584139-73622929:+,myosin_XVB,MAP3K3->chr17:61699775-61773663:+,mitogen-activated_protein_kinase_kinase_kinase_3	MDAMB453_BREAST	0.15	0.16	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	ATOH8--ELMOD3	1	2	ATOH8	11319	chr2:86008289:+	ELMOD3	19076	chr2:85584090:+	ONLY_REF_SPLICE	NO	8	61	0.27	0.05	0.0158	0.0316	ATOH8->atonal_bHLH_transcription_factor_8,chr2:85978467-86015189:+,ELMOD3->ELMO_domain_containing_3,chr2:85581517-85618875:+	MDAMB453_BREAST	0.05	0.27	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	FBXO36--RIF1	1	2	FBXO36	2424	chr2:230797602:+	RIF1	29477	chr2:152301852:+	ONLY_REF_SPLICE	NO	3	28	0.5	0.1	0.0158	0.0316	FBXO36->F-box_protein_36,chr2:230787018-230877825:+,RIF1->chr2:152266397-152364527:+,replication_timing_regulatory_factor_1	MDAMB453_BREAST	0.1	0.5	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	ATOH8--ELMOD3	1	1	ATOH8	5929	chr2:85991305:+	ELMOD3	19076	chr2:85584090:+	ONLY_REF_SPLICE	YES	15	61	0.12	0.03	0.0158	0.0158	ATOH8->atonal_bHLH_transcription_factor_8,chr2:85978467-86015189:+,ELMOD3->ELMO_domain_containing_3,chr2:85581517-85618875:+	MDAMB453_BREAST	0.03	0.12	0.0316	TRUE	0	0	0	1	0	FALSE	ACH-000910
MDAMB453_BREAST	FOXP1--EIF4E3	1	1	FOXP1	1419	chr3:71632722:-	EIF4E3	54640	chr3:71748859:-	ONLY_REF_SPLICE	YES	0	77	1	0.03	0.0158	0.0158	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:3],LOCAL_REARRANGEMENT:-:[91427],FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,EIF4E3->chr3:71724567-71803924:-,eukaryotic_translation_initiation_factor_4E_family_member_3	MDAMB453_BREAST	0.03	1	0.0316	TRUE	0	0	0	1	0	FALSE	ACH-000910
MDAMB453_BREAST	MAGT1--ATP7A	1	1	MAGT1	1285	chrX:77150806:-	ATP7A	19354	chrX:77227118:+	ONLY_REF_SPLICE	YES	126	5	0.02	0.29	0.0158	0.0158	LOCAL_INVERSION:-:+:[15104],MAGT1->chrX:77081861-77151090:-,magnesium_transporter_1,ATP7A->ATPase_copper_transporting_alpha,chrX:77166194-77305892:+	MDAMB453_BREAST	0.02	0.29	0.0316	TRUE	0	0	0	1	0	FALSE	ACH-000910
MDAMB453_BREAST	PGM2L1--RP11-624D11.2	1	1	PGM2L1	12662	chr11:74049513:-	RP11-624D11.2	24131	chr11:30066002:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0.0158	PGM2L1->chr11:74041363-74109518:-,phosphoglucomutase_2-like_1,RP11-624D11.2->chr11:30065605-30105890:-	MDAMB453_BREAST	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000910
MDAMB453_BREAST	RCC1--PTP4A2	1	1	RCC1	2175	chr1:28834672:+	PTP4A2	27281	chr1:32385259:-	ONLY_REF_SPLICE	YES	3	271	0.4	0.01	0.0158	0.0158	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2	MDAMB453_BREAST	0.01	0.4	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000910
MDAMB453_BREAST	RNGTT--AKIRIN2	1	1	RNGTT	1284	chr6:89673065:-	AKIRIN2	25617	chr6:88391481:-	ONLY_REF_SPLICE	YES	49	90	0.04	0.02	0.0158	0.0158	RNGTT->RNA_guanylyltransferase_and_5'-phosphatase,chr6:89319985-89673348:-,AKIRIN2->akirin_2,chr6:88384790-88411927:-	MDAMB453_BREAST	0.02	0.04	0.0316	TRUE	0	0	0	1	0	FALSE	ACH-000910
MDAMB453_BREAST	TMLHE--CLIC2	1	1	TMLHE	2332	chrX:154842453:-	CLIC2	18105	chrX:154528458:-	ONLY_REF_SPLICE	YES	15	0	0.12	1	0.0158	0.0158	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,CLIC2->chloride_intracellular_channel_2,chrX:154505500-154563966:-	MDAMB453_BREAST	0.12	1	0.0316	TRUE	5	6	1	7	0	FALSE	ACH-000910
SW48_LARGE_INTESTINE	TIMM23B--PARGP1	6	2	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1188	0.0396	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	SW48_LARGE_INTESTINE	1	1	0.1584	TRUE	393	2105	140	19	0	FALSE	ACH-000958
SW48_LARGE_INTESTINE	JDP2--HIST1H1C	4	1	JDP2	6637	chr14:75928157:+	HIST1H1C	15871	chr6:26056364:-	INCL_NON_REF_SPLICE	YES	9	9	0.36	0.36	0.0792	0.0198	JDP2->Jun_dimerization_protein_2,Oncogene{Bushman},chr14:75894419-75940814:+,HIST1H1C->Oncogene{Bushman},chr6:26055968-26056699:-,histone_cluster_1,_H1c	SW48_LARGE_INTESTINE	0.36	0.36	0.099	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	RABL6--RPF1	4	0	RABL6	16822	chr9:139731901:+	RPF1	23672	chr1:84945053:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0792	0	RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+,RPF1->chr1:84944942-84963473:+,ribosome_production_factor_1_homolog	SW48_LARGE_INTESTINE	1	1	0.0792	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	ANKRD11--RPL31	3	0	ANKRD11	19658	chr16:89357507:-	RPL31	38806	chr2:101618738:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,RPL31->chr2:101618177-101640494:+,ribosomal_protein_L31	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	C17orf76-AS1--MRPS23	3	0	C17orf76-AS1	1593	chr17:16342728:+	MRPS23	13849	chr17:55926771:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0594	0	C17orf76-AS1->chr17:16342136-16381992:+,MRPS23->chr17:55916842-55927417:-,mitochondrial_ribosomal_protein_S23	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	EEF2--LAMB3	3	0	EEF2	3558	chr19:3982910:-	LAMB3	32884	chr1:209788449:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	GTEx&tcga_normals:1/3694=0.03%,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,LAMB3->chr1:209788215-209825811:-,laminin_subunit_beta_3	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	EIF3L--TARS2	3	0	EIF3L	13128	chr22:38274029:+	TARS2	27924	chr1:150471467:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	EIF3L->chr22:38244875-38285414:+,eukaryotic_translation_initiation_factor_3_subunit_L,TARS2->chr1:150459887-150480078:+,threonyl-tRNA_synthetase_2,_mitochondrial_(putative)	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	FAM208B--MYBBP1A	3	0	FAM208B	21444	chr10:5788811:+	MYBBP1A	43976	chr17:4448191:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,MYBBP1A->MYB_binding_protein_1a,Oncogene{Bushman},chr17:4442192-4458926:-	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	IRS1--HOOK1	3	0	IRS1	8716	chr2:227600270:-	HOOK1	43052	chr1:60341893:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	IRS1->chr2:227596033-227664475:-,insulin_receptor_substrate_1,HOOK1->chr1:60280458-60342050:+,hook_microtubule-tethering_protein_1	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	KDM6B--GNB1	3	0	KDM6B	12897	chr17:7757643:+	GNB1	33431	chr1:1717642:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	KDM6B->chr17:7743222-7758114:+,lysine_demethylase_6B,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	MYBBP1A--CTD-2537I9.12	3	0	MYBBP1A	9911	chr17:4448565:-	CTD-2537I9.12	20500	chr19:56173423:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	MYBBP1A->MYB_binding_protein_1a,Oncogene{Bushman},chr17:4442192-4458926:-,CTD-2537I9.12->chr19:56173267-56186081:-	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	PPP1R13L--UGT8	3	0	PPP1R13L	7037	chr19:45898828:-	UGT8	20980	chr4:115544223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,UGT8->UDP_glycosyltransferase_8,chr4:115519611-115599380:+	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	PPP2R4--EEF2	3	0	PPP2R4	18817	chr9:131909999:+	EEF2	27948	chr19:3980563:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	PYCR1--CCNL2	3	0	PYCR1	6149	chr17:79892837:-	CCNL2	11795	chr1:1334640:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	PYCR1->chr17:79890260-79900288:-,pyrroline-5-carboxylate_reductase_1,CCNL2->chr1:1321091-1334708:-,cyclin_L2	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	RP11-442H21.2--IGSF9B	3	0	RP11-442H21.2	1721	chr10:74035018:-	IGSF9B	26379	chr11:133786188:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	RP11-442H21.2->chr10:74034673-74035738:-,IGSF9B->chr11:133778459-133826880:-,immunoglobulin_superfamily_member_9B	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	RPL27A--ATXN1	3	0	RPL27A	3482	chr11:8706439:+	ATXN1	25410	chr6:16586138:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0594	0	RPL27A->chr11:8703958-8736306:+,ribosomal_protein_L27a,ATXN1->ataxin_1,chr6:16299343-16761722:-	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	SEMA4B--HN1L	3	0	SEMA4B	20336	chr15:90772721:+	HN1L	32061	chr16:1750049:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	SEMA4B->Oncogene{Bushman},chr15:90703836-90772911:+,semaphorin_4B,HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	SMC1A--NFATC4	3	0	SMC1A	9048	chrX:53432203:-	NFATC4	39036	chr14:24846727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	SMC1A->chrX:53401070-53449677:-,structural_maintenance_of_chromosomes_1A,NFATC4->chr14:24834879-24848810:+,nuclear_factor_of_activated_T-cells_4	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	TTC8--NFIA	3	0	TTC8	7733	chr14:89307492:+	NFIA	35586	chr1:61848961:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	TTC8->chr14:89290497-89344335:+,tetratricopeptide_repeat_domain_8,NFIA->chr1:61330931-61928465:+,nuclear_factor_I_A	SW48_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	AC007405.6--WAPAL	2	0	AC007405.6	1075	chr2:171627697:+	WAPAL	19514	chr10:88220253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	AC007405.6->chr2:171627623-171634658:+,WAPAL->chr10:88195013-88281572:-	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	APBB2--SCARB2	2	0	APBB2	10480	chr4:41102656:-	SCARB2	43975	chr4:77102254:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-,SCARB2->chr4:77079890-77135046:-,scavenger_receptor_class_B_member_2	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	CYFIP1--TUBGCP5	2	0	CYFIP1	18302	chr15:22958342:+	TUBGCP5	41286	chr15:22835916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:+:[18113],CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1,TUBGCP5->chr15:22833395-22873892:+,tubulin_gamma_complex_associated_protein_5	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	HIAT1--PTPRF	2	0	HIAT1	1220	chr1:100503872:+	PTPRF	22919	chr1:44019163:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	HIAT1->chr1:100503653-100548933:+,PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	IPO7--UBC	2	0	IPO7	1226	chr11:9406394:+	UBC	34107	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	IPO7->chr11:9406169-9469673:+,importin_7,UBC->chr12:125396150-125401914:-,ubiquitin_C	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	MTG1--CYHR1	2	0	MTG1	7895	chr10:135216277:+	CYHR1	22653	chr8:145678843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	MTG1->chr10:135207598-135234811:+,mitochondrial_ribosome_associated_GTPase_1,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	NEDD4--PSPC1	2	0	NEDD4	5183	chr15:56258671:-	PSPC1	46098	chr13:20304484:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	NEDD4->chr15:56119120-56285944:-,neural_precursor_cell_expressed,_developmentally_down-regulated_4,_E3_ubiquitin_protein_ligase,PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	465	1949	224	605	0	FALSE	ACH-000958
SW48_LARGE_INTESTINE	RPH3AL--CAPRIN2	2	0	RPH3AL	20220	chr17:96902:-	CAPRIN2	33083	chr12:30904067:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains),CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
SW48_LARGE_INTESTINE	ZFP36--SMARCA2	2	0	ZFP36	1116	chr19:39897568:+	SMARCA2	34509	chr9:2110254:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	ZFP36->Oncogene{Bushman},ZFP36_ring_finger_protein,chr19:39897453-39900052:+,SMARCA2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_2,chr9:2015342-2193624:+	SW48_LARGE_INTESTINE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000958
GI1_CENTRAL_NERVOUS_SYSTEM	PKD1--RNPS1	94	15	PKD1	18676	chr16:2153128:-	RNPS1	45756	chr16:2303657:-	INCL_NON_REF_SPLICE	YES	19	185	0.85	0.37	1.0639	0.1698	PKD1->chr16:2138711-2185899:-,polycystin_1,_transient_receptor_potential_channel_interacting,RNPS1->RNA_binding_protein_with_serine_rich_domain_1,chr16:2303117-2318413:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.37	0.85	1.2337	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PTGFRN--USP33	75	25	PTGFRN	9314	chr1:117516945:+	USP33	30482	chr1:78191447:-	ONLY_REF_SPLICE	YES	130	51	0.43	0.66	0.8488	0.2829	PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	GI1_CENTRAL_NERVOUS_SYSTEM	0.43	0.66	1.1317	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	RPTOR--EYA2	78	13	RPTOR	26452	chr17:78867665:+	EYA2	53561	chr20:45630067:+	ONLY_REF_SPLICE	YES	32	0	0.74	1	0.8828	0.1471	RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	GI1_CENTRAL_NERVOUS_SYSTEM	0.74	1	1.0299	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	SIN3A--MAP3K5	56	20	SIN3A	3271	chr15:75743764:-	MAP3K5	68927	chr6:136889012:-	ONLY_REF_SPLICE	YES	32	1	0.7	0.99	0.6338	0.2264	SIN3A->SIN3_transcription_regulator_family_member_A,chr15:75661720-75748183:-,MAP3K5->chr6:136878185-137113656:-,mitogen-activated_protein_kinase_kinase_kinase_5	GI1_CENTRAL_NERVOUS_SYSTEM	0.7	0.99	0.8602	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	56	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6338	0.1358	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.7696	TRUE	508	994	45	981	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	TXNRD1--CIT	43	7	TXNRD1	11664	chr12:104682818:+	CIT	40173	chr12:120272032:-	ONLY_REF_SPLICE	YES	131	11	0.28	0.82	0.4867	0.0792	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CIT->chr12:120123595-120315095:-,citron_rho-interacting_serine/threonine_kinase	GI1_CENTRAL_NERVOUS_SYSTEM	0.28	0.82	0.5659	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	38	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4301	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.4301	TRUE	0	0	0	518	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	RBM14--BBS1	32	2	RBM14	1476	chr11:66384528:+	BBS1	24234	chr11:66297290:+	ONLY_REF_SPLICE	YES	47	28	0.42	0.55	0.3622	0.0226	LOCAL_REARRANGEMENT:+:[82955],RBM14->RNA_binding_motif_protein_14,chr11:66384053-66394818:+,BBS1->Bardet-Biedl_syndrome_1,chr11:66278077-66301098:+	GI1_CENTRAL_NERVOUS_SYSTEM	0.42	0.55	0.3848	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	32	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	133	4	0.2	0.89	0.3622	0.0113	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.2	0.89	0.3735	TRUE	519	3926	326	965	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PTGFRN--USP33	30	6	PTGFRN	9314	chr1:117516945:+	USP33	39550	chr1:78178966:-	ONLY_REF_SPLICE	YES	130	70	0.22	0.34	0.3395	0.0679	PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	GI1_CENTRAL_NERVOUS_SYSTEM	0.22	0.34	0.4074	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	AIDA--FGGY	25	23	AIDA	5377	chr1:222867131:-	FGGY	27870	chr1:59922633:+	ONLY_REF_SPLICE	YES	102	21	0.32	0.7	0.2829	0.2603	AIDA->axin_interactor,_dorsalization_associated,chr1:222841355-222886552:-,FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+	GI1_CENTRAL_NERVOUS_SYSTEM	0.32	0.7	0.5432	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	LACTB--NEDD4	24	4	LACTB	5026	chr15:63421849:+	NEDD4	16950	chr15:56243787:-	ONLY_REF_SPLICE	YES	19	41	0.6	0.41	0.2716	0.0453	LACTB->Oncogene{Bushman},chr15:63413999-63434260:+,lactamase_beta,NEDD4->chr15:56119120-56285944:-,neural_precursor_cell_expressed,_developmentally_down-regulated_4,_E3_ubiquitin_protein_ligase	GI1_CENTRAL_NERVOUS_SYSTEM	0.41	0.6	0.3169	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	CASC4--LINGO1	21	5	CASC4	13652	chr15:44673174:+	LINGO1	30169	chr15:78027395:-	ONLY_REF_SPLICE	YES	110	0	0.19	1	0.2377	0.0566	{Klijn_CCL:Colo-Rectal=1},CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+,LINGO1->chr15:77905369-78113242:-,leucine_rich_repeat_and_Ig_domain_containing_1	GI1_CENTRAL_NERVOUS_SYSTEM	0.19	1	0.2943	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	NARS--CEACAMP11	21	2	NARS	1506	chr18:55288940:-	CEACAMP11	18189	chr19:43783171:-	ONLY_REF_SPLICE	YES	32	0	0.42	1	0.2377	0.0226	NARS->asparaginyl-tRNA_synthetase,chr18:55267888-55289445:-,CEACAMP11->carcinoembryonic_antigen_related_cell_adhesion_molecule_pseudogene_11,chr19:43783085-43788470:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.42	1	0.2603	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	ERC1--WNK1	17	12	ERC1	12874	chr12:1225199:+	WNK1	47540	chr12:922808:+	ONLY_REF_SPLICE	YES	23	73	0.56	0.28	0.1924	0.1358	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},LOCAL_REARRANGEMENT:+:[79057],ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+	GI1_CENTRAL_NERVOUS_SYSTEM	0.28	0.56	0.3282	TRUE	0	1	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	FHOD3--MOCOS	18	7	FHOD3	1287	chr18:33877963:+	MOCOS	51285	chr18:33828885:+	ONLY_REF_SPLICE	YES	24	19	0.51	0.57	0.2037	0.0792	LOCAL_REARRANGEMENT:+:[25557],FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,MOCOS->chr18:33767482-33852120:+,molybdenum_cofactor_sulfurase	GI1_CENTRAL_NERVOUS_SYSTEM	0.51	0.57	0.2829	TRUE	0	0	0	2	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	DAB1--ST6GALNAC5	17	7	DAB1	3257	chr1:58971732:-	ST6GALNAC5	39861	chr1:77509889:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1924	0.0792	DAB1->DAB1,_reelin_adaptor_protein,chr1:57460451-59012406:-,ST6GALNAC5->ST6_N-acetylgalactosaminide_alpha-2,6-sialyltransferase_5,chr1:77333126-77531396:+	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.2716	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	IQCG--HBS1L	16	6	IQCG	1614	chr3:197686400:-	HBS1L	26502	chr6:135371785:-	ONLY_REF_SPLICE	YES	1	148	0.96	0.13	0.1811	0.0679	IQCG->IQ_motif_containing_G,chr3:197615946-197687013:-,HBS1L->HBS1_like_translational_GTPase,chr6:135281516-135424194:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.13	0.96	0.249	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PTGFRN--USP33	14	12	PTGFRN	9314	chr1:117516945:+	USP33	33861	chr1:78186890:-	ONLY_REF_SPLICE	YES	130	69	0.17	0.27	0.1584	0.1358	PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	GI1_CENTRAL_NERVOUS_SYSTEM	0.17	0.27	0.2942	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	TRIO--DLG2	16	4	TRIO	12208	chr5:14316852:+	DLG2	107326	chr11:83544813:-	ONLY_REF_SPLICE	YES	61	0	0.25	1	0.1811	0.0453	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	GI1_CENTRAL_NERVOUS_SYSTEM	0.25	1	0.2264	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	15	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1698	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1698	FALSE	499	1288	110	792	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	12	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1358	0.0905	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.2263	TRUE	458	1351	185	561	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	MED13L--RP11-103B5.2	13	3	MED13L	14361	chr12:116445216:-	RP11-103B5.2	44831	chr12:117579196:+	ONLY_REF_SPLICE	YES	18	0	0.47	1	0.1471	0.034	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,RP11-103B5.2->chr12:117537286-117579896:+	GI1_CENTRAL_NERVOUS_SYSTEM	0.47	1	0.1811	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	12	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	12	1	0.59	0.1358	0.0566	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GI1_CENTRAL_NERVOUS_SYSTEM	0.59	1	0.1924	TRUE	465	1949	224	605	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	SIN3A--MAP3K5	7	21	SIN3A	8235	chr15:75728687:-	MAP3K5	68927	chr6:136889012:-	ONLY_REF_SPLICE	YES	33	1	0.46	0.97	0.0792	0.2377	SIN3A->SIN3_transcription_regulator_family_member_A,chr15:75661720-75748183:-,MAP3K5->chr6:136878185-137113656:-,mitogen-activated_protein_kinase_kinase_kinase_5	GI1_CENTRAL_NERVOUS_SYSTEM	0.46	0.97	0.3169	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	TXNRD1--CIT	12	0	TXNRD1	10019	chr12:104680887:+	CIT	40173	chr12:120272032:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1358	0	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CIT->chr12:120123595-120315095:-,citron_rho-interacting_serine/threonine_kinase	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1358	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	AIDA--FGGY	8	15	AIDA	5377	chr1:222867131:-	FGGY	28986	chr1:59977983:+	ONLY_REF_SPLICE	YES	102	44	0.18	0.34	0.0905	0.1698	AIDA->axin_interactor,_dorsalization_associated,chr1:222841355-222886552:-,FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+	GI1_CENTRAL_NERVOUS_SYSTEM	0.18	0.34	0.2603	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	10	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	21	45	0.43	0.26	0.1132	0.0679	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	GI1_CENTRAL_NERVOUS_SYSTEM	0.26	0.43	0.1811	TRUE	267	562	48	632	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	11	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.1245	0.0113	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GI1_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.1358	FALSE	499	1288	110	792	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	MT-TL1--MT-RNR2	11	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1245	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1245	FALSE	7	521	16	32	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	AIDA--FGGY	6	18	AIDA	4956	chr1:222867552:-	FGGY	27870	chr1:59922633:+	ONLY_REF_SPLICE	YES	117	21	0.17	0.53	0.0679	0.2037	AIDA->axin_interactor,_dorsalization_associated,chr1:222841355-222886552:-,FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+	GI1_CENTRAL_NERVOUS_SYSTEM	0.17	0.53	0.2716	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PTGFRN--USP33	4	26	PTGFRN	9314	chr1:117516945:+	USP33	26122	chr1:78200101:-	ONLY_REF_SPLICE	YES	130	28	0.19	0.52	0.0453	0.2943	PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	GI1_CENTRAL_NERVOUS_SYSTEM	0.19	0.52	0.3396	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	NARS--CEACAMP11	7	11	NARS	1506	chr18:55288940:-	CEACAMP11	16278	chr19:43788498:-	INCL_NON_REF_SPLICE	YES	32	0	0.36	1	0.0792	0.1245	NARS->asparaginyl-tRNA_synthetase,chr18:55267888-55289445:-,CEACAMP11->carcinoembryonic_antigen_related_cell_adhesion_molecule_pseudogene_11,chr19:43783085-43788470:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.36	1	0.2037	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	20	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0.2264	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.2717	FALSE	499	1288	110	792	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	8	3	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0905	0.034	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1245	TRUE	254	575	65	124	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	8	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0905	0.0226	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.77	1	0.1131	FALSE	292	1546	117	613	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	CIB2--RP11-467N20.5	8	1	CIB2	2415	chr15:78416047:-	RP11-467N20.5	14135	chr15:23411062:-	ONLY_REF_SPLICE	YES	13	0	0.41	1	0.0905	0.0113	CIB2->calcium_and_integrin_binding_family_member_2,chr15:78396948-78423886:-,RP11-467N20.5->chr15:23405069-23414193:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.41	1	0.1018	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	CIB2--RP11-467N20.5	8	1	CIB2	1380	chr15:78423507:-	RP11-467N20.5	14135	chr15:23411062:-	ONLY_REF_SPLICE	YES	14	0	0.39	1	0.0905	0.0113	CIB2->calcium_and_integrin_binding_family_member_2,chr15:78396948-78423886:-,RP11-467N20.5->chr15:23405069-23414193:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.39	1	0.1018	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	5	11	MT-ND6	1189	chrM:14485:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0566	0.1245	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1811	FALSE	499	1288	110	792	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PYGO1--RP11-19J5.2	6	7	PYGO1	2113	chr15:55880033:-	RP11-19J5.2	17117	chr15:70113460:-	ONLY_REF_SPLICE	YES	2	2	0.87	0.87	0.0679	0.0792	PYGO1->chr15:55831088-55881145:-,pygopus_family_PHD_finger_1,RP11-19J5.2->chr15:70113095-70115195:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.87	0.87	0.1471	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PKM--PPIA	7	2	PKM	16753	chr15:72494877:-	PPIA	23268	chr7:44836286:+	INCL_NON_REF_SPLICE	YES	2091	0	0	1	0.0792	0.0226	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	GI1_CENTRAL_NERVOUS_SYSTEM	0	1	0.1018	TRUE	0	0	0	18	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PTGFRN--USP33	1	25	PTGFRN	9314	chr1:117516945:+	USP33	29064	chr1:78194397:-	ONLY_REF_SPLICE	YES	130	45	0.17	0.37	0.0113	0.2829	PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	GI1_CENTRAL_NERVOUS_SYSTEM	0.17	0.37	0.2942	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0792	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0792	TRUE	1	39	0	134	39	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PTGFRN--USP33	3	13	PTGFRN	8206	chr1:117509952:+	USP33	30482	chr1:78191447:-	ONLY_REF_SPLICE	YES	234	51	0.06	0.24	0.034	0.1471	PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	GI1_CENTRAL_NERVOUS_SYSTEM	0.06	0.24	0.1811	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	NUDT1--HACE1	6	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0679	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0679	TRUE	1	20	0	20	17	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	7	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0453	0.0792	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GI1_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.1245	FALSE	499	1288	110	792	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	ARHGEF10--DLGAP2	5	0	ARHGEF10	1138	chr8:1772279:+	DLGAP2	49820	chr8:1616495:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0566	0	ARHGEF10->Rho_guanine_nucleotide_exchange_factor_10,chr8:1772142-1906807:+,DLGAP2->chr8:1449532-1656642:+,discs_large_homolog_associated_protein_2	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0566	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	CHSY3--HSPA8P4	4	2	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	14	0	0.3	1	0.0453	0.0226	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	GI1_CENTRAL_NERVOUS_SYSTEM	0.3	1	0.0679	FALSE	89	26	1	44	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	AIDA--FGGY	1	12	AIDA	4956	chr1:222867552:-	FGGY	28986	chr1:59977983:+	ONLY_REF_SPLICE	NO	117	44	0.1	0.23	0.0113	0.1358	AIDA->axin_interactor,_dorsalization_associated,chr1:222841355-222886552:-,FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+	GI1_CENTRAL_NERVOUS_SYSTEM	0.1	0.23	0.1471	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	UBR5--SRSF3	3	2	UBR5	47200	chr8:103276702:-	SRSF3	58241	chr6:36564538:+	ONLY_REF_SPLICE	YES	99	608	0.05	0.01	0.034	0.0226	UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,SRSF3->Oncogene{Bushman},chr6:36562145-36573377:+,serine/arginine-rich_splicing_factor_3	GI1_CENTRAL_NERVOUS_SYSTEM	0.01	0.05	0.0566	FALSE	0	0	0	1	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	GALK2--LINC00593	3	1	GALK2	18668	chr15:49575915:+	LINC00593	31930	chr15:70133085:+	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.034	0.0113	GALK2->chr15:49447853-49660066:+,galactokinase_2,LINC00593->chr15:70127573-70135459:+,long_intergenic_non-protein_coding_RNA_593	GI1_CENTRAL_NERVOUS_SYSTEM	0.18	1	0.0453	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	TXNRD1--CIT	3	1	TXNRD1	10256	chr12:104681124:+	CIT	40173	chr12:120272032:-	ONLY_REF_SPLICE	YES	38	11	0.1	0.27	0.034	0.0113	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CIT->chr12:120123595-120315095:-,citron_rho-interacting_serine/threonine_kinase	GI1_CENTRAL_NERVOUS_SYSTEM	0.1	0.27	0.0453	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	FHOD3--MOCOS	2	3	FHOD3	1287	chr18:33877963:+	MOCOS	52364	chr18:33831122:+	ONLY_REF_SPLICE	YES	24	28	0.17	0.15	0.0226	0.034	LOCAL_REARRANGEMENT:+:[25557],FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,MOCOS->chr18:33767482-33852120:+,molybdenum_cofactor_sulfurase	GI1_CENTRAL_NERVOUS_SYSTEM	0.15	0.17	0.0566	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PTGFRN--USP33	1	7	PTGFRN	8206	chr1:117509952:+	USP33	33861	chr1:78186890:-	ONLY_REF_SPLICE	YES	234	69	0.03	0.1	0.0113	0.0792	PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	GI1_CENTRAL_NERVOUS_SYSTEM	0.03	0.1	0.0905	TRUE	0	0	0	1	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	CIB2--RP11-467N20.5	2	2	CIB2	3509	chr15:78412910:-	RP11-467N20.5	14135	chr15:23411062:-	ONLY_REF_SPLICE	YES	14	0	0.22	1	0.0226	0.0226	CIB2->calcium_and_integrin_binding_family_member_2,chr15:78396948-78423886:-,RP11-467N20.5->chr15:23405069-23414193:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.22	1	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.36	1	0.0226	0.0226	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.36	1	0.0452	FALSE	125	705	46	456	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PTGFRN--USP33	1	6	PTGFRN	9314	chr1:117516945:+	USP33	38153	chr1:78180468:-	ONLY_REF_SPLICE	YES	130	55	0.05	0.11	0.0113	0.0679	PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	GI1_CENTRAL_NERVOUS_SYSTEM	0.05	0.11	0.0792	TRUE	0	0	0	1	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	ZZZ3--RP4-794H19.1	2	1	ZZZ3	1158	chr1:78148947:-	RP4-794H19.1	25221	chr1:59361681:-	ONLY_REF_SPLICE	YES	173	0	0.02	1	0.0226	0.0113	ZZZ3->chr1:78028101-78149104:-,zinc_finger_ZZ-type_containing_3,RP4-794H19.1->chr1:59348540-59362375:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0339	TRUE	0	0	0	1	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	CCDC122--ENOX1	2	0	CCDC122	2147	chr13:44448978:-	ENOX1	19348	chr13:44058288:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0226	FALSE	25	145	6	90	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	2	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	GI1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0226	FALSE	56	216	12	147	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	PTGFRN--USP33	1	3	PTGFRN	8206	chr1:117509952:+	USP33	39550	chr1:78178966:-	ONLY_REF_SPLICE	YES	234	70	0.02	0.05	0.0113	0.034	PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	GI1_CENTRAL_NERVOUS_SYSTEM	0.02	0.05	0.0453	TRUE	0	0	0	1	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	RP11-81H3.2--RP11-56G10.2	1	1	RP11-81H3.2	8169	chr12:74678805:-	RP11-56G10.2	17105	chr12:74932255:-	ONLY_REF_SPLICE	YES	13	31	0.13	0.06	0.0113	0.0113	RP11-81H3.2->chr12:74526946-74796315:-,RP11-56G10.2->chr12:74931925-74932413:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.06	0.13	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000756
GI1_CENTRAL_NERVOUS_SYSTEM	SNX8--MAD1L1	1	1	SNX8	3400	chr7:2353963:-	MAD1L1	56914	chr7:1938026:-	ONLY_REF_SPLICE	YES	26	86	0.07	0.02	0.0113	0.0113	NEIGHBORS[18527],SNX8->chr7:2291405-2393953:-,sorting_nexin_8,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	GI1_CENTRAL_NERVOUS_SYSTEM	0.02	0.07	0.0226	FALSE	0	0	0	2	0	FALSE	ACH-000756
NCIH1915_LUNG	RPS6KB1--VMP1	664	188	RPS6KB1	1240	chr17:57970686:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	60	208	0.93	0.8	6.4544	1.8275	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH1915_LUNG	0.8	0.93	8.2819	TRUE	0	9	0	10	6	TRUE	ACH-000434
NCIH1915_LUNG	ABCD3--RP11-148B18.3	470	308	ABCD3	1212	chr1:94884144:+	RP11-148B18.3	30348	chr1:94798865:+	INCL_NON_REF_SPLICE	YES	193	0	0.8	1	4.5686	2.9939	LOCAL_REARRANGEMENT:+:[83529],ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+,RP11-148B18.3->chr1:94798823-94800404:+	NCIH1915_LUNG	0.8	1	7.5625	TRUE	0	2	0	2	2	TRUE	ACH-000434
NCIH1915_LUNG	SLC23A2--BCAS3	322	25	SLC23A2	2214	chr20:4982052:-	BCAS3	73679	chr17:59445688:+	ONLY_REF_SPLICE	YES	0	8	1	0.98	3.13	0.243	SLC23A2->chr20:4833002-4990939:-,solute_carrier_family_23_member_2,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	NCIH1915_LUNG	0.98	1	3.373	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RPS24--CAMK2G	241	65	RPS24	2926	chr10:79795478:+	CAMK2G	23484	chr10:75602299:-	ONLY_REF_SPLICE	YES	4691	164	0.06	0.65	2.3426	0.6318	{Klijn_CCL:Lung=1},RPS24->chr10:79793518-79816570:+,ribosomal_protein_S24,CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-	NCIH1915_LUNG	0.06	0.65	2.9744	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	TIMM23B--LINC00843	200	42	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.99	1.9441	0.4083	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1915_LUNG	0.99	1	2.3524	TRUE	508	994	45	981	0	FALSE	ACH-000434
NCIH1915_LUNG	RPS24--CAMK2G	173	123	RPS24	2926	chr10:79795478:+	CAMK2G	21626	chr10:75607840:-	ONLY_REF_SPLICE	YES	4691	101	0.06	0.75	1.6816	1.1956	{Klijn_CCL:Lung=1},RPS24->chr10:79793518-79816570:+,ribosomal_protein_S24,CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-	NCIH1915_LUNG	0.06	0.75	2.8772	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	ZNF7--C8orf33	174	44	ZNF7	9341	chr8:146062892:+	C8orf33	20316	chr8:146278448:+	ONLY_REF_SPLICE	YES	23	56	0.9	0.8	1.6914	0.4277	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,C8orf33->chr8:146277764-146281416:+,chromosome_8_open_reading_frame_33	NCIH1915_LUNG	0.8	0.9	2.1191	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RPS24--CAMK2G	119	95	RPS24	2926	chr10:79795478:+	CAMK2G	22361	chr10:75607105:-	ONLY_REF_SPLICE	YES	4691	102	0.04	0.68	1.1567	0.9234	{Klijn_CCL:Lung=1},RPS24->chr10:79793518-79816570:+,ribosomal_protein_S24,CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-	NCIH1915_LUNG	0.04	0.68	2.0801	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	TIMM23--RP11-464F9.1	125	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	347	20	0.27	0.87	1.2151	0.0486	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1915_LUNG	0.27	0.87	1.2637	TRUE	519	3926	326	965	0	FALSE	ACH-000434
NCIH1915_LUNG	UBAP1--RP11-537H15.3	107	54	UBAP1	1236	chr9:34179238:+	RP11-537H15.3	14819	chr9:34084330:+	ONLY_REF_SPLICE	YES	76	0	0.68	1	1.0401	0.5249	LOCAL_REARRANGEMENT:+:[82780],UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,RP11-537H15.3->chr9:34084330-34096223:+	NCIH1915_LUNG	0.68	1	1.565	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RPS6KB1--VMP1	45	199	RPS6KB1	1839	chr17:57971285:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	60	208	0.8	0.54	0.4374	1.9344	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH1915_LUNG	0.54	0.8	2.3718	TRUE	0	9	0	10	6	TRUE	ACH-000434
NCIH1915_LUNG	PLXDC1--TAF13	90	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8748	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH1915_LUNG	1	1	0.8748	TRUE	7	10	0	216	0	FALSE	ACH-000434
NCIH1915_LUNG	SNRPA1--ADAMTS7	62	53	SNRPA1	3867	chr15:101832167:-	ADAMTS7	22672	chr15:79069930:-	ONLY_REF_SPLICE	YES	204	0	0.36	1	0.6027	0.5152	SNRPA1->chr15:101821715-101835487:-,small_nuclear_ribonucleoprotein_polypeptide_A',ADAMTS7->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_7,chr15:79051545-79103773:-	NCIH1915_LUNG	0.36	1	1.1179	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	NEGR1--TCF20	47	23	NEGR1	3835	chr1:72400762:-	TCF20	34337	chr22:42575708:-	ONLY_REF_SPLICE	YES	29	17	0.71	0.8	0.4569	0.2236	NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1,TCF20->chr22:42556019-42739622:-,transcription_factor_20_(AR1)	NCIH1915_LUNG	0.71	0.8	0.6805	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	OSBPL6--AC005037.3	47	10	OSBPL6	8716	chr2:179193105:+	AC005037.3	39979	chr2:201873709:+	ONLY_REF_SPLICE	YES	17	2	0.77	0.97	0.4569	0.0972	OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6,AC005037.3->chr2:201827986-201873825:+	NCIH1915_LUNG	0.77	0.97	0.5541	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	MT-TA--MT-TC	46	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4471	0.0389	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1915_LUNG	1	1	0.486	FALSE	462	80	0	856	0	FALSE	ACH-000434
NCIH1915_LUNG	OSBPL7--FAM171A2	44	12	OSBPL7	9569	chr17:45890632:-	FAM171A2	18198	chr17:42437500:-	ONLY_REF_SPLICE	YES	11	0	0.84	1	0.4277	0.1166	OSBPL7->chr17:45884738-45899200:-,oxysterol_binding_protein_like_7,FAM171A2->chr17:42430583-42441243:-,family_with_sequence_similarity_171_member_A2	NCIH1915_LUNG	0.84	1	0.5443	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	SPG11--MRPL52	41	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3985	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	NCIH1915_LUNG	1	1	0.3985	TRUE	38	11	0	19	0	FALSE	ACH-000434
NCIH1915_LUNG	ZNF7--C8orf33	25	62	ZNF7	9349	chr8:146062900:+	C8orf33	19969	chr8:146278101:+	INCL_NON_REF_SPLICE	YES	28	64	0.76	0.58	0.243	0.6027	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,C8orf33->chr8:146277764-146281416:+,chromosome_8_open_reading_frame_33	NCIH1915_LUNG	0.58	0.76	0.8457	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	TMEM120B--CTSB	31	0	TMEM120B	13972	chr12:122216098:+	CTSB	41201	chr8:11700733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3013	0	TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B,CTSB->Oncogene{Bushman},cathepsin_B,chr8:11700033-11726957:-	NCIH1915_LUNG	1	1	0.3013	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	ZNF7--C8orf33	13	62	ZNF7	9344	chr8:146062895:+	C8orf33	19967	chr8:146278099:+	INCL_NON_REF_SPLICE	YES	27	64	0.74	0.54	0.1264	0.6027	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,C8orf33->chr8:146277764-146281416:+,chromosome_8_open_reading_frame_33	NCIH1915_LUNG	0.54	0.74	0.7291	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	SAR1A--MICB	28	0	SAR1A	12354	chr10:71910295:-	MICB	23202	chr6:31475255:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2722	0	GTEx_FI:{Blood_Vessel=[count:3=pct:0.8],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Thyroid=[count:2=pct:1.1],Vagina=[count:1=pct:1.8],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Skin=[count:1=pct:0.3],_not_provided_=[count:1=pct:100.0],Colon=[count:1=pct:0.5]},SAR1A->chr10:71907045-71930279:-,secretion_associated_Ras_related_GTPase_1A,MICB->MHC_class_I_polypeptide-related_sequence_B,chr6:31462658-31478901:+	NCIH1915_LUNG	1	1	0.2722	TRUE	2	1	0	2	0	FALSE	ACH-000434
NCIH1915_LUNG	RP11-96H19.1--RP11-446N19.1	23	18	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	2	0.98	0.95	0.2236	0.175	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1915_LUNG	0.95	0.98	0.3986	FALSE	407	2205	196	549	0	FALSE	ACH-000434
NCIH1915_LUNG	RPS6KB1--VMP1	2	89	RPS6KB1	1240	chr17:57970686:+	VMP1	36266	chr17:57889031:+	ONLY_REF_SPLICE	YES	60	170	0.6	0.35	0.0194	0.8651	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH1915_LUNG	0.35	0.6	0.8845	TRUE	0	6	0	2	3	TRUE	ACH-000434
NCIH1915_LUNG	MT-ND4--MT-ND4L	8	59	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	NO	1595	0	0.04	1	0.0778	0.5735	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1915_LUNG	0.04	1	0.6513	FALSE	344	827	44	306	0	FALSE	ACH-000434
NCIH1915_LUNG	RP11-96H19.1--RP11-446N19.1	20	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	3	0.97	0.9	0.1944	0.0778	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1915_LUNG	0.9	0.97	0.2722	FALSE	515	4851	409	746	0	FALSE	ACH-000434
NCIH1915_LUNG	SNRPA1--ADAMTS7	13	10	SNRPA1	1186	chr15:101835302:-	ADAMTS7	22672	chr15:79069930:-	ONLY_REF_SPLICE	YES	179	0	0.11	1	0.1264	0.0972	SNRPA1->chr15:101821715-101835487:-,small_nuclear_ribonucleoprotein_polypeptide_A',ADAMTS7->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_7,chr15:79051545-79103773:-	NCIH1915_LUNG	0.11	1	0.2236	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	SNRPA1--ADAMTS7	13	6	SNRPA1	1186	chr15:101835302:-	ADAMTS7	25073	chr15:79067135:-	ONLY_REF_SPLICE	YES	179	69	0.1	0.22	0.1264	0.0583	SNRPA1->chr15:101821715-101835487:-,small_nuclear_ribonucleoprotein_polypeptide_A',ADAMTS7->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_7,chr15:79051545-79103773:-	NCIH1915_LUNG	0.1	0.22	0.1847	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	14	0	RP11-254B13.1	1021	chr12:68947642:-	RP11-255H23.4	5999	chr19:24010024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1361	0	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	1	1	0.1361	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RPS6KB1--VMP1	4	40	RPS6KB1	1192	chr17:57970638:+	VMP1	36291	chr17:57889056:+	INCL_NON_REF_SPLICE	YES	56	204	0.44	0.18	0.0389	0.3888	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH1915_LUNG	0.18	0.44	0.4277	TRUE	0	6	0	2	3	TRUE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	13	3	RP11-254B13.1	1100	chr12:68947563:-	RP11-255H23.4	5962	chr19:24010061:-	INCL_NON_REF_SPLICE	NO	16	0	0.5	1	0.1264	0.0292	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	0.5	1	0.1556	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	MT-ND6--MT-TE	13	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1264	0.0194	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1915_LUNG	1	1	0.1458	FALSE	499	1288	110	792	0	FALSE	ACH-000434
NCIH1915_LUNG	NRIP1--AF127936.7	13	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.61	1	0.1264	0.0097	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1915_LUNG	0.61	1	0.1361	FALSE	125	705	46	456	0	FALSE	ACH-000434
NCIH1915_LUNG	MT-TA--MT-TC	12	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1166	0.0389	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1915_LUNG	1	1	0.1555	FALSE	462	80	0	856	0	FALSE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	11	7	RP11-254B13.1	1137	chr12:68947526:-	RP11-255H23.4	5984	chr19:24010039:-	INCL_NON_REF_SPLICE	YES	158	0	0.1	1	0.1069	0.068	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	0.1	1	0.1749	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	CUL3--RMDN2	12	2	CUL3	1450	chr2:225449661:-	RMDN2	43717	chr2:38201183:+	ONLY_REF_SPLICE	YES	46	27	0.23	0.34	0.1166	0.0194	CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3,RMDN2->chr2:38150330-38294285:+,regulator_of_microtubule_dynamics_2	NCIH1915_LUNG	0.23	0.34	0.136	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	OSBPL6--AC005037.3	10	5	OSBPL6	8604	chr2:179192993:+	AC005037.3	39966	chr2:201873696:+	INCL_NON_REF_SPLICE	YES	20	2	0.43	0.88	0.0972	0.0486	OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6,AC005037.3->chr2:201827986-201873825:+	NCIH1915_LUNG	0.43	0.88	0.1458	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	11	1	RP11-254B13.1	1062	chr12:68947601:-	RP11-255H23.4	6004	chr19:24010019:-	INCL_NON_REF_SPLICE	YES	7	0	0.63	1	0.1069	0.0097	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	0.63	1	0.1166	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	CUL3--RMDN2	10	4	CUL3	1450	chr2:225449661:-	RMDN2	38570	chr2:38156405:+	ONLY_REF_SPLICE	YES	46	34	0.23	0.29	0.0972	0.0389	CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3,RMDN2->chr2:38150330-38294285:+,regulator_of_microtubule_dynamics_2	NCIH1915_LUNG	0.23	0.29	0.1361	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	NRIP1--AF127936.7	9	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.48	1	0.0875	0.0292	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1915_LUNG	0.48	1	0.1167	FALSE	164	806	69	479	0	FALSE	ACH-000434
NCIH1915_LUNG	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0875	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1915_LUNG	1	1	0.0875	FALSE	462	80	0	856	0	FALSE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	9	0	RP11-254B13.1	1019	chr12:68947644:-	RP11-255H23.4	5994	chr19:24010029:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0875	0	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	1	1	0.0875	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	MT-ND6--MT-TE	8	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0778	0.0194	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1915_LUNG	1	1	0.0972	FALSE	499	1288	110	792	0	FALSE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	8	1	RP11-254B13.1	1050	chr12:68947613:-	RP11-255H23.4	5992	chr19:24010031:-	INCL_NON_REF_SPLICE	YES	6	0	0.6	1	0.0778	0.0097	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	0.6	1	0.0875	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	MT-ND4--MT-ND4L	3	18	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	133	0	0.14	1	0.0292	0.175	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1915_LUNG	0.14	1	0.2042	FALSE	344	827	44	306	0	FALSE	ACH-000434
NCIH1915_LUNG	SNRPA1--ADAMTS7	5	10	SNRPA1	3867	chr15:101832167:-	ADAMTS7	25073	chr15:79067135:-	ONLY_REF_SPLICE	YES	204	69	0.07	0.18	0.0486	0.0972	SNRPA1->chr15:101821715-101835487:-,small_nuclear_ribonucleoprotein_polypeptide_A',ADAMTS7->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_7,chr15:79051545-79103773:-	NCIH1915_LUNG	0.07	0.18	0.1458	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	JSRP1--RPS28	7	1	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.068	0.0097	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH1915_LUNG	0.89	1	0.0777	TRUE	0	1	0	84	1	FALSE	ACH-000434
NCIH1915_LUNG	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.068	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1915_LUNG	1	1	0.068	FALSE	292	1546	117	613	0	FALSE	ACH-000434
NCIH1915_LUNG	STAP2--PRAP1	5	6	STAP2	9446	chr19:4327121:-	PRAP1	15142	chr10:135160660:+	INCL_NON_REF_SPLICE	YES	24	0	0.31	1	0.0486	0.0583	STAP2->chr19:4324040-4342783:-,signal_transducing_adaptor_family_member_2,PRAP1->chr10:135160650-135166187:+,proline-rich_acidic_protein_1	NCIH1915_LUNG	0.31	1	0.1069	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	REV3L--RPL28	6	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH1915_LUNG	1	1	0.0583	TRUE	22	156	2	142	0	FALSE	ACH-000434
NCIH1915_LUNG	ZNF7--C8orf33	1	20	ZNF7	9341	chr8:146062892:+	C8orf33	20551	chr8:146278683:+	ONLY_REF_SPLICE	YES	23	62	0.48	0.25	0.0097	0.1944	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,C8orf33->chr8:146277764-146281416:+,chromosome_8_open_reading_frame_33	NCIH1915_LUNG	0.25	0.48	0.2041	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	OSBPL6--AC005037.3	5	3	OSBPL6	6949	chr2:179188352:+	AC005037.3	39966	chr2:201873696:+	INCL_NON_REF_SPLICE	YES	54	2	0.13	0.8	0.0486	0.0292	OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6,AC005037.3->chr2:201827986-201873825:+	NCIH1915_LUNG	0.13	0.8	0.0778	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RP11-680G10.1--GSE1	5	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.0486	0.0194	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1915_LUNG	0.88	1	0.068	TRUE	458	1351	185	561	0	FALSE	ACH-000434
NCIH1915_LUNG	RP11-96H19.1--RP11-446N19.1	1	18	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	2	1	0.9	0.0097	0.175	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1915_LUNG	0.9	1	0.1847	FALSE	192	492	57	212	0	FALSE	ACH-000434
NCIH1915_LUNG	JSRP1--RPS28	5	1	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0.0097	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH1915_LUNG	1	1	0.0583	TRUE	0	1	0	84	1	FALSE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	4	5	RP11-254B13.1	1117	chr12:68947546:-	RP11-255H23.4	5965	chr19:24010058:-	INCL_NON_REF_SPLICE	NO	96	0	0.09	1	0.0389	0.0486	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	0.09	1	0.0875	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	MNAT1--SLC38A6	5	0	MNAT1	1210	chr14:61201669:+	SLC38A6	38791	chr14:61545548:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0	NEIGHBORS[11161],MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+,SLC38A6->chr14:61447832-61550451:+,solute_carrier_family_38_member_6	NCIH1915_LUNG	1	1	0.0486	FALSE	0	0	0	1	0	FALSE	ACH-000434
NCIH1915_LUNG	MT-ND6--MT-TE	4	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0389	0.0389	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1915_LUNG	0.89	1	0.0778	FALSE	499	1288	110	792	0	FALSE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	5	0	RP11-254B13.1	1019	chr12:68947644:-	RP11-255H23.4	6025	chr19:24009998:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	1	1	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RP11-156P1.3--FAM101B	4	3	RP11-156P1.3	10988	chr17:45110644:-	FAM101B	23280	chr17:293285:-	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0389	0.0292	RP11-156P1.3->chr17:45061411-45177689:-,FAM101B->chr17:289769-295730:-,family_with_sequence_similarity_101_member_B	NCIH1915_LUNG	0.64	1	0.0681	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	STAP2--PRAP1	3	7	STAP2	9628	chr19:4326939:-	PRAP1	15142	chr10:135160660:+	INCL_NON_REF_SPLICE	YES	26	0	0.28	1	0.0292	0.068	STAP2->chr19:4324040-4342783:-,signal_transducing_adaptor_family_member_2,PRAP1->chr10:135160650-135166187:+,proline-rich_acidic_protein_1	NCIH1915_LUNG	0.28	1	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	SNRPA1--ADAMTS7	4	2	SNRPA1	1186	chr15:101835302:-	ADAMTS7	29988	chr15:79060601:-	ONLY_REF_SPLICE	YES	179	29	0.03	0.17	0.0389	0.0194	SNRPA1->chr15:101821715-101835487:-,small_nuclear_ribonucleoprotein_polypeptide_A',ADAMTS7->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_7,chr15:79051545-79103773:-	NCIH1915_LUNG	0.03	0.17	0.0583	TRUE	0	0	0	1	0	FALSE	ACH-000434
NCIH1915_LUNG	DNTTIP2--GCLM	4	1	DNTTIP2	1842	chr1:94344633:-	GCLM	21171	chr1:94360284:-	ONLY_REF_SPLICE	YES	112	483	0.04	0.01	0.0389	0.0097	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[5287],DNTTIP2->chr1:94333373-94345474:-,deoxynucleotidyltransferase_terminal_interacting_protein_2,GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit	NCIH1915_LUNG	0.01	0.04	0.0486	FALSE	0	0	0	1	0	FALSE	ACH-000434
NCIH1915_LUNG	COLEC11--TRAPPC12	4	0	COLEC11	7214	chr2:3660972:+	TRAPPC12	29906	chr2:3461392:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0389	0	COLEC11->chr2:3642426-3692048:+,collectin_subfamily_member_11,TRAPPC12->chr2:3383446-3488865:+,trafficking_protein_particle_complex_12	NCIH1915_LUNG	1	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1915_LUNG	1	1	0.0389	FALSE	499	1288	110	792	0	FALSE	ACH-000434
NCIH1915_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1915_LUNG	1	1	0.0389	FALSE	499	1288	110	792	0	FALSE	ACH-000434
NCIH1915_LUNG	PLXDC1--TAF13	4	0	PLXDC1	27520	chr17:37222840:-	TAF13	38540	chr1:109605627:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH1915_LUNG	1	1	0.0389	TRUE	7	10	0	216	0	FALSE	ACH-000434
NCIH1915_LUNG	SCLY--HNRNPA1P47	4	0	SCLY	5584	chr2:238978118:+	HNRNPA1P47	24715	chr2:195052116:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	SCLY->chr2:238969530-239008054:+,selenocysteine_lyase,HNRNPA1P47->chr2:195052103-195053033:+,heterogeneous_nuclear_ribonucleoprotein_A1_pseudogene_47	NCIH1915_LUNG	1	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	STAP2--PRAP1	3	4	STAP2	9446	chr19:4327121:-	PRAP1	16412	chr10:135163599:+	ONLY_REF_SPLICE	YES	24	0	0.23	1	0.0292	0.0389	STAP2->chr19:4324040-4342783:-,signal_transducing_adaptor_family_member_2,PRAP1->chr10:135160650-135166187:+,proline-rich_acidic_protein_1	NCIH1915_LUNG	0.23	1	0.0681	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	JSRP1--RPS28	3	3	JSRP1	1230	chr19:2269529:-	RPS28	10778	chr19:8386413:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.86	0.0292	0.0292	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH1915_LUNG	0.86	1	0.0584	TRUE	0	1	0	84	1	FALSE	ACH-000434
NCIH1915_LUNG	MT-ND6--MT-TE	3	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0.0292	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1915_LUNG	1	1	0.0584	FALSE	499	1288	110	792	0	FALSE	ACH-000434
NCIH1915_LUNG	ZNF7--C8orf33	2	7	ZNF7	9341	chr8:146062892:+	C8orf33	21272	chr8:146279404:+	ONLY_REF_SPLICE	YES	23	135	0.28	0.06	0.0194	0.068	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,C8orf33->chr8:146277764-146281416:+,chromosome_8_open_reading_frame_33	NCIH1915_LUNG	0.06	0.28	0.0874	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0.0194	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1915_LUNG	1	1	0.0486	FALSE	462	80	0	856	0	FALSE	ACH-000434
NCIH1915_LUNG	MGST1--RP11-424M22.3	3	1	MGST1	16905	chr12:16536538:+	RP11-424M22.3	25672	chr12:16726445:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0292	0.0097	NEIGHBORS_OVERLAP:+:+:[6529],MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,RP11-424M22.3->chr12:16720345-16726874:+	NCIH1915_LUNG	0.67	1	0.0389	FALSE	0	1	0	6	0	FALSE	ACH-000434
NCIH1915_LUNG	MICAL2--RP13-631K18.5	3	1	MICAL2	11476	chr11:12183966:+	RP13-631K18.5	52636	chr11:12110669:+	ONLY_REF_SPLICE	YES	54	0	0.07	1	0.0292	0.0097	LOCAL_REARRANGEMENT:+:[4555],MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2,RP13-631K18.5->chr11:12108438-12110988:+	NCIH1915_LUNG	0.07	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	LYPLAL1--RRP15	3	0	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	NCIH1915_LUNG	1	1	0.0292	TRUE	0	12	0	13	2	TRUE	ACH-000434
NCIH1915_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1915_LUNG	1	1	0.0292	FALSE	499	1288	110	792	0	FALSE	ACH-000434
NCIH1915_LUNG	P4HA1--H2AFY2	3	0	P4HA1	1209	chr10:74856524:-	H2AFY2	25603	chr10:71849816:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	P4HA1->chr10:74766975-74856732:-,prolyl_4-hydroxylase_subunit_alpha_1,H2AFY2->H2A_histone_family_member_Y2,chr10:71812552-71872036:+	NCIH1915_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RP11-254B13.1--RP11-255H23.4	3	0	RP11-254B13.1	1011	chr12:68947652:-	RP11-255H23.4	6026	chr19:24009997:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	NUCLCLUST,RP11-254B13.1->chr12:68946775-68947662:-,RP11-255H23.4->chr19:24000401-24057503:-	NCIH1915_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	3	1	0.75	0.0097	0.0778	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1915_LUNG	0.75	1	0.0875	FALSE	467	2173	244	435	0	FALSE	ACH-000434
NCIH1915_LUNG	VTI1A--RP11-57H14.3	2	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	29	0	0.12	1	0.0194	0.0194	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH1915_LUNG	0.12	1	0.0388	FALSE	272	151	14	158	0	FALSE	ACH-000434
NCIH1915_LUNG	FAM60A--DENND5B	2	1	FAM60A	2035	chr12:31478958:-	DENND5B	23799	chr12:31648853:-	ONLY_REF_SPLICE	YES	37	8	0.07	0.27	0.0194	0.0097	LOCAL_REARRANGEMENT:-:[55165],FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,DENND5B->DENN_domain_containing_5B,chr12:31535157-31744031:-	NCIH1915_LUNG	0.07	0.27	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	STAP2--PRAP1	1	5	STAP2	9628	chr19:4326939:-	PRAP1	16412	chr10:135163599:+	ONLY_REF_SPLICE	NO	26	0	0.19	1	0.0097	0.0486	STAP2->chr19:4324040-4342783:-,signal_transducing_adaptor_family_member_2,PRAP1->chr10:135160650-135166187:+,proline-rich_acidic_protein_1	NCIH1915_LUNG	0.19	1	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	DST--RAB23	2	0	DST	4600	chr6:56716195:-	RAB23	131309	chr6:57075243:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,RAB23->RAB23,_member_RAS_oncogene_family,chr6:57053607-57087078:-	NCIH1915_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	EIF4A2--RP11-686D22.8	2	0	EIF4A2	5678	chr3:186505671:+	RP11-686D22.8	12001	chr17:33734610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,RP11-686D22.8->chr17:33733703-33736787:-	NCIH1915_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	ELP2--ANKRD17	2	0	ELP2	3778	chr18:33716340:+	ANKRD17	65405	chr4:73958017:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	ELP2->chr18:33709407-33757909:+,elongator_acetyltransferase_complex_subunit_2,ANKRD17->ankyrin_repeat_domain_17,chr4:73939093-74124515:-	NCIH1915_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	KCNQ5-IT1--KCNQ5	2	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	NCIH1915_LUNG	1	1	0.0194	FALSE	1	11	0	34	0	FALSE	ACH-000434
NCIH1915_LUNG	LUC7L3--SRSF11	2	0	LUC7L3	1288	chr17:48797192:+	SRSF11	27776	chr1:70694105:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LUC7L3->LUC7_like_3_pre-mRNA_splicing_factor,chr17:48796905-48833574:+,SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11	NCIH1915_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	NDUFA12--PLEKHA5	2	0	NDUFA12	4760	chr12:95387946:-	PLEKHA5	25631	chr12:19406874:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NDUFA12->NADH:ubiquinone_oxidoreductase_subunit_A12,chr12:95290831-95397546:-,PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5	NCIH1915_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	NRBF2--AKR1E2	2	0	NRBF2	1211	chr10:64893260:+	AKR1E2	12247	chr10:4872867:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NRBF2->chr10:64893050-64914783:+,nuclear_receptor_binding_factor_2,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	NCIH1915_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	PNO1--PPP3R1	2	0	PNO1	4135	chr2:68389795:+	PPP3R1	18738	chr2:68408142:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Prostate=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:+:-:[2619],PNO1->chr2:68384976-68403370:+,partner_of_NOB1_homolog,PPP3R1->chr2:68405989-68483369:-,protein_phosphatase_3_regulatory_subunit_B,_alpha	NCIH1915_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	PXN--UBC	2	0	PXN	1155	chr12:120703420:-	UBC	25913	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Lung=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Breast_-_Mammary_Tissue=1,Lung=1,Brain_-_Hypothalamus=1,Thyroid=1,Muscle_-_Skeletal=1},PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH1915_LUNG	1	1	0.0194	TRUE	4	0	0	1	0	FALSE	ACH-000434
NCIH1915_LUNG	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	NCIH1915_LUNG	1	1	0.0194	TRUE	0	1	0	17	0	TRUE	ACH-000434
NCIH1915_LUNG	SNRPA1--ADAMTS7	1	4	SNRPA1	1186	chr15:101835302:-	ADAMTS7	25566	chr15:79066642:-	ONLY_REF_SPLICE	YES	179	63	0.03	0.07	0.0097	0.0389	SNRPA1->chr15:101821715-101835487:-,small_nuclear_ribonucleoprotein_polypeptide_A',ADAMTS7->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_7,chr15:79051545-79103773:-	NCIH1915_LUNG	0.03	0.07	0.0486	TRUE	0	0	0	1	0	FALSE	ACH-000434
NCIH1915_LUNG	RP11-156P1.3--FAM101B	1	3	RP11-156P1.3	9884	chr17:45112410:-	FAM101B	23280	chr17:293285:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0097	0.0292	RP11-156P1.3->chr17:45061411-45177689:-,FAM101B->chr17:289769-295730:-,family_with_sequence_similarity_101_member_B	NCIH1915_LUNG	0.44	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	11	1	0.21	0.0097	0.0194	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1915_LUNG	0.21	1	0.0291	TRUE	465	1949	224	605	0	FALSE	ACH-000434
NCIH1915_LUNG	SNRPA1--ADAMTS7	1	2	SNRPA1	1186	chr15:101835302:-	ADAMTS7	36712	chr15:79051920:-	ONLY_REF_SPLICE	YES	179	65	0.02	0.04	0.0097	0.0194	SNRPA1->chr15:101821715-101835487:-,small_nuclear_ribonucleoprotein_polypeptide_A',ADAMTS7->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_7,chr15:79051545-79103773:-	NCIH1915_LUNG	0.02	0.04	0.0291	TRUE	0	0	0	1	0	FALSE	ACH-000434
NCIH1915_LUNG	ATXN7--THOC7	1	1	ATXN7	5937	chr3:63898901:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	NO	13	16	0.13	0.11	0.0097	0.0097	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	NCIH1915_LUNG	0.11	0.13	0.0194	TRUE	0	4	3	3	1	TRUE	ACH-000434
NCIH1915_LUNG	BNIP2--ANXA2	1	1	BNIP2	1400	chr15:59981334:-	ANXA2	31755	chr15:60678285:-	ONLY_REF_SPLICE	YES	113	294	0.02	0.01	0.0097	0.0097	BNIP2->BCL2/adenovirus_E1B_19kDa_interacting_protein_2,chr15:59951345-59981733:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	NCIH1915_LUNG	0.01	0.02	0.0194	FALSE	0	0	0	2	0	FALSE	ACH-000434
NCIH1915_LUNG	DNAJC24--ELP4	1	1	DNAJC24	2020	chr11:31392406:+	ELP4	27061	chr11:31648657:+	ONLY_REF_SPLICE	YES	187	83	0.01	0.02	0.0097	0.0097	NEIGHBORS[77901],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4	NCIH1915_LUNG	0.01	0.02	0.0194	FALSE	0	0	0	2	0	FALSE	ACH-000434
NCIH1915_LUNG	KIRREL3--CDH13	1	1	KIRREL3	2916	chr11:126870351:-	CDH13	46836	chr16:83250950:+	ONLY_REF_SPLICE	YES	59	31	0.03	0.06	0.0097	0.0097	KIRREL3->chr11:126293254-126873355:-,kin_of_IRRE_like_3_(Drosophila),CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+	NCIH1915_LUNG	0.03	0.06	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000434
NCIH1915_LUNG	MGST1--RP11-424M22.3	1	1	MGST1	11416	chr12:16520399:+	RP11-424M22.3	25672	chr12:16726445:+	ONLY_REF_SPLICE	YES	21	0	0.09	1	0.0097	0.0097	NEIGHBORS_OVERLAP:+:+:[6529],MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,RP11-424M22.3->chr12:16720345-16726874:+	NCIH1915_LUNG	0.09	1	0.0194	FALSE	0	2	0	4	0	FALSE	ACH-000434
NCIH1915_LUNG	NFX1--SPINK4	1	1	NFX1	13411	chr9:33338587:+	SPINK4	35514	chr9:33245110:+	ONLY_REF_SPLICE	YES	27	0	0.07	1	0.0097	0.0097	LOCAL_REARRANGEMENT:+:[41944],NFX1->chr9:33290509-33371155:+,nuclear_transcription_factor,_X-box_binding_1,SPINK4->chr9:33218363-33248565:+,serine_peptidase_inhibitor,_Kazal_type_4	NCIH1915_LUNG	0.07	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000434
NCIH1915_LUNG	PTPRR--SMC5	1	1	PTPRR	19222	chr12:71050484:-	SMC5	46585	chr9:72965030:+	ONLY_REF_SPLICE	NO	75	86	0.03	0.02	0.0097	0.0097	PTPRR->chr12:71031853-71314623:-,protein_tyrosine_phosphatase,_receptor_type_R,SMC5->chr9:72873937-72969804:+,structural_maintenance_of_chromosomes_5	NCIH1915_LUNG	0.02	0.03	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000434
NCIH1915_LUNG	ZFYVE21--KLC1	1	1	ZFYVE21	1250	chr14:104182316:+	KLC1	34861	chr14:104166992:+	ONLY_REF_SPLICE	YES	136	53	0.01	0.04	0.0097	0.0097	GTEx_FI:{Esophagus=[count:4=pct:1.0],Brain=[count:3=pct:0.5],Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Colon=[count:1=pct:0.5],Pituitary=[count:1=pct:1.9],Breast=[count:1=pct:0.9]},GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_REARRANGEMENT:+:[14179],ZFYVE21->chr14:104182067-104200005:+,zinc_finger_FYVE-type_containing_21,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	NCIH1915_LUNG	0.01	0.04	0.0194	FALSE	10	10	1	10	0	FALSE	ACH-000434
YKG1_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC008132.1	109	14	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	3	0	0.98	1	1.4214	0.1826	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.98	1	1.604	TRUE	0	0	0	25	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	59	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7694	0.3912	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	YKG1_CENTRAL_NERVOUS_SYSTEM	0.99	1	1.1606	TRUE	508	994	45	981	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	MTAP--CDKN2B-AS1	35	45	MTAP	8659	chr9:21838009:+	CDKN2B-AS1	38778	chr9:22096371:+	ONLY_REF_SPLICE	YES	137	8	0.37	0.91	0.4564	0.5868	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.37	0.91	1.0432	FALSE	0	1	0	2	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC008132.1	39	27	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	4	0	0.94	1	0.5086	0.3521	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.8607	TRUE	1	1	0	28	1	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	MTAP--CDKN2B-AS1	23	60	MTAP	8659	chr9:21838009:+	CDKN2B-AS1	37616	chr9:22092307:+	ONLY_REF_SPLICE	YES	137	0	0.38	1	0.2999	0.7824	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.38	1	1.0823	FALSE	0	0	0	2	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	34	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	240	2	0.14	0.95	0.4434	0.0782	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	YKG1_CENTRAL_NERVOUS_SYSTEM	0.14	0.95	0.5216	TRUE	519	3926	326	965	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	DTYMK--SLC8A1-AS1	28	14	DTYMK	1338	chr2:242626069:-	SLC8A1-AS1	35521	chr2:40478824:+	ONLY_REF_SPLICE	YES	500	0	0.08	1	0.3651	0.1826	DTYMK->chr2:242615157-242626406:-,deoxythymidylate_kinase,SLC8A1-AS1->SLC8A1_antisense_RNA_1,chr2:40013593-40482349:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.5477	TRUE	0	0	0	1	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	COL6A3--MT-RNR2	24	8	COL6A3	41635	chr2:238249354:-	MT-RNR2	57522	chrM:1699:+	INCL_NON_REF_SPLICE	YES	2763	0	0.01	1	0.313	0.1043	COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	YKG1_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.4173	FALSE	0	0	0	6	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	MTAP--CDKN2B-AS1	15	40	MTAP	8659	chr9:21838009:+	CDKN2B-AS1	39664	chr9:22097257:+	ONLY_REF_SPLICE	YES	137	17	0.29	0.76	0.1956	0.5216	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.29	0.76	0.7172	FALSE	0	1	0	2	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	23	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	1	4	0.97	0.88	0.2999	0.0652	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.88	0.97	0.3651	TRUE	458	1351	185	561	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	MTAP--CDKN2B-AS1	16	31	MTAP	8659	chr9:21838009:+	CDKN2B-AS1	40771	chr9:22112319:+	ONLY_REF_SPLICE	YES	137	16	0.26	0.75	0.2086	0.4043	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.26	0.75	0.6129	FALSE	0	2	0	2	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	20	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2608	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.2608	FALSE	13	9	0	364	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	CLTC--VMP1	17	7	CLTC	1316	chr17:57697534:+	VMP1	54605	chr17:57917129:+	ONLY_REF_SPLICE	YES	592	477	0.04	0.05	0.2217	0.0913	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	YKG1_CENTRAL_NERVOUS_SYSTEM	0.04	0.05	0.313	FALSE	0	0	0	3	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	18	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	1	61	0.95	0.24	0.2347	0.013	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.24	0.95	0.2477	TRUE	465	1949	224	605	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	14	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	95	57	0.19	0.28	0.1826	0.1043	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	YKG1_CENTRAL_NERVOUS_SYSTEM	0.19	0.28	0.2869	TRUE	267	562	48	632	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC008132.1	12	11	AP003900.6	1122	chr21:11169841:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	3	2	0.88	0.92	0.1565	0.1434	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.88	0.92	0.2999	TRUE	0	0	0	25	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RHOBTB3--AC008592.7	11	8	RHOBTB3	6488	chr5:95072779:+	AC008592.7	28521	chr5:95306000:-	ONLY_REF_SPLICE	YES	981	0	0.02	1	0.1434	0.1043	RHOBTB3->Rho_related_BTB_domain_containing_3,chr5:95049226-95160087:+,AC008592.7->chr5:95300703-95322015:-	YKG1_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.2477	TRUE	0	0	0	1	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	9	5	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.78	1	0.1174	0.0652	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	YKG1_CENTRAL_NERVOUS_SYSTEM	0.78	1	0.1826	FALSE	292	1546	117	613	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	10	0	HSP90AB1	7260	chr6:44221083:+	MT-RNR2	10826	chrM:1699:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1304	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1304	FALSE	13	9	0	364	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1043	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1043	FALSE	230	198	14	283	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	7	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0913	0.0391	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1304	TRUE	477	1352	189	275	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC008132.1	3	16	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	4	0	0.83	1	0.0391	0.2086	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.2477	TRUE	0	0	0	12	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	VIM--PPIA	7	0	VIM	2122	chr10:17271379:+	PPIA	12215	chr7:44836289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0913	0	VIM->chr10:17270258-17279592:+,vimentin,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0913	TRUE	0	0	0	6	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	5	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	93	63	0.11	0.16	0.0652	0.0913	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	YKG1_CENTRAL_NERVOUS_SYSTEM	0.11	0.16	0.1565	TRUE	267	562	48	632	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	6	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9119	74	0	0.11	0.0782	0.0391	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	YKG1_CENTRAL_NERVOUS_SYSTEM	0	0.11	0.1173	FALSE	231	217	16	283	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	5	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0652	0.0913	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.1565	FALSE	515	4851	409	746	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	MTAP--CDKN2B-AS1	3	14	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	39664	chr9:22097257:+	ONLY_REF_SPLICE	YES	116	17	0.13	0.5	0.0391	0.1826	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.13	0.5	0.2217	FALSE	0	2	0	7	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	5	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.43	1	0.0652	0.0652	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	YKG1_CENTRAL_NERVOUS_SYSTEM	0.43	1	0.1304	FALSE	125	705	46	456	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	HSPBP1--GRK5	6	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0782	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0782	TRUE	1	39	0	134	39	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	CLTC--VMP1	3	10	CLTC	2524	chr17:57721844:+	VMP1	53132	chr17:57915656:+	ONLY_REF_SPLICE	YES	461	400	0.03	0.03	0.0391	0.1304	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	YKG1_CENTRAL_NERVOUS_SYSTEM	0.03	0.03	0.1695	FALSE	0	0	0	1	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RAI1--LRRC48	4	6	RAI1	5710	chr17:17627473:+	LRRC48	22061	chr17:17877166:+	ONLY_REF_SPLICE	YES	23	17	0.3	0.37	0.0522	0.0782	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,LRRC48->chr17:17876127-17920203:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.3	0.37	0.1304	TRUE	0	0	0	1	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	3	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0391	0.0913	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.1304	FALSE	407	2205	196	549	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	MTAP--CDKN2B-AS1	1	14	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	40771	chr9:22112319:+	ONLY_REF_SPLICE	YES	116	16	0.11	0.48	0.013	0.1826	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.11	0.48	0.1956	FALSE	0	5	0	7	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	3	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.39	1	0.0391	0.0782	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	YKG1_CENTRAL_NERVOUS_SYSTEM	0.39	1	0.1173	FALSE	164	806	69	479	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	AC026150.5--FMN1	4	1	AC026150.5	2136	chr15:30491534:+	FMN1	43840	chr15:33069120:-	ONLY_REF_SPLICE	YES	0	8	1	0.38	0.0522	0.013	AC026150.5->chr15:30488239-30506743:+,FMN1->chr15:33057747-33486897:-,formin_1	YKG1_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.0652	TRUE	0	0	0	1	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RABGAP1L--DARS2	4	1	RABGAP1L	18286	chr1:174363283:+	DARS2	67170	chr1:173814367:+	ONLY_REF_SPLICE	YES	25	65	0.17	0.07	0.0522	0.013	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,DARS2->aspartyl-tRNA_synthetase_2,_mitochondrial,chr1:173793641-173827684:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.07	0.17	0.0652	TRUE	0	0	0	1	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	CLTC--VMP1	1	12	CLTC	31229	chr17:57768072:+	VMP1	38263	chr17:57784888:+	ONLY_REF_SPLICE	NO	800	0	0.02	1	0.013	0.1565	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	YKG1_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.1695	FALSE	0	0	0	2	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	4	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	9143	0	0	1	0.0391	0.0522	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	YKG1_CENTRAL_NERVOUS_SYSTEM	0	1	0.0913	FALSE	231	217	16	283	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	4	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	9020	0	0	1	0.0391	0.0522	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	YKG1_CENTRAL_NERVOUS_SYSTEM	0	1	0.0913	FALSE	231	217	16	283	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0522	FALSE	231	205	14	283	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	PVT1--RP11-89M16.1	3	3	PVT1	1202	chr8:128806980:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	26	0	0.19	1	0.0391	0.0391	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	YKG1_CENTRAL_NERVOUS_SYSTEM	0.19	1	0.0782	TRUE	0	1	0	3	1	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	3	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	10	1	0.38	0.0391	0.0391	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	YKG1_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.0782	FALSE	416	2512	207	587	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	2	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	10286	0	0	1	0.0391	0.0261	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	YKG1_CENTRAL_NERVOUS_SYSTEM	0	1	0.0652	FALSE	231	217	16	283	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC008132.1	1	9	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	NO	3	6	0.77	0.62	0.013	0.1174	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.62	0.77	0.1304	TRUE	0	0	0	16	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	SAMD5--SASH1	3	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	15	1	0.21	0.8	0.0391	0.013	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.21	0.8	0.0521	TRUE	53	396	64	110	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	0	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0391	FALSE	231	205	14	283	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RAI1--LRRC48	3	0	RAI1	5710	chr17:17627473:+	LRRC48	25409	chr17:17887142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0391	0	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,LRRC48->chr17:17876127-17920203:+	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0391	TRUE	0	0	0	1	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.013	0.1043	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1173	FALSE	467	2173	244	435	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.013	0.1043	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1173	FALSE	76	45	6	15	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0261	0.0391	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0652	TRUE	160	277	29	98	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	MTAP--CDKN2B-AS1	1	6	MTAP	8659	chr9:21838009:+	CDKN2B-AS1	44105	chr9:22120199:+	ONLY_REF_SPLICE	NO	137	53	0.05	0.12	0.013	0.0782	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	YKG1_CENTRAL_NERVOUS_SYSTEM	0.05	0.12	0.0912	FALSE	0	2	0	2	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	183	0.38	0.02	0.0261	0.013	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	YKG1_CENTRAL_NERVOUS_SYSTEM	0.02	0.38	0.0391	FALSE	16	356	14	466	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	CALM2--SRBD1	2	0	CALM2	1161	chr2:47403580:-	SRBD1	34701	chr2:45704214:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,SRBD1->S1_RNA_binding_domain_1,chr2:45615819-45839304:-	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	2	0	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0261	TRUE	0	20	0	35	2	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	LRRFIP1--RAPH1	2	0	LRRFIP1	1165	chr2:238536383:+	RAPH1	45193	chr2:204360076:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,RAPH1->Oncogene{Bushman},Ras_association_(RalGDS/AF-6)_and_pleckstrin_homology_domains_1,chr2:204259068-204400133:-	YKG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	PVT1--RP11-89M16.1	1	4	PVT1	2520	chr8:128808317:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	28	0	0.15	1	0.013	0.0522	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	YKG1_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.0652	TRUE	0	1	0	3	1	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	AC026150.5--FMN1	1	1	AC026150.5	1079	chr15:30488317:+	FMN1	43840	chr15:33069120:-	ONLY_REF_SPLICE	YES	2	8	0.5	0.2	0.013	0.013	AC026150.5->chr15:30488239-30506743:+,FMN1->chr15:33057747-33486897:-,formin_1	YKG1_CENTRAL_NERVOUS_SYSTEM	0.2	0.5	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	ADAM12--DOCK1	1	1	ADAM12	3570	chr10:127967484:-	DOCK1	59276	chr10:128850945:+	ONLY_REF_SPLICE	YES	76	123	0.03	0.02	0.013	0.013	ADAM12->ADAM_metallopeptidase_domain_12,Oncogene{Bushman},chr10:127700950-128077024:-,DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1	YKG1_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.026	TRUE	0	0	0	1	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	NDUFB2--HIPK2	1	1	NDUFB2	2961	chr7:140396642:+	HIPK2	18425	chr7:139416814:-	ONLY_REF_SPLICE	YES	1295	49	0	0.04	0.013	0.013	GTEx&tcga_normals:1/3694=0.03%,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+,HIPK2->Oncogene{Bushman},chr7:139246316-139477577:-,homeodomain_interacting_protein_kinase_2	YKG1_CENTRAL_NERVOUS_SYSTEM	0	0.04	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	POLE2--NEMF	1	1	POLE2	3464	chr14:50146443:-	NEMF	47212	chr14:50262662:-	ONLY_REF_SPLICE	NO	32	121	0.06	0.02	0.013	0.013	LOCAL_REARRANGEMENT:-:[94857],POLE2->chr14:50110273-50155140:-,polymerase_(DNA)_epsilon_2,_accessory_subunit,NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor	YKG1_CENTRAL_NERVOUS_SYSTEM	0.02	0.06	0.026	TRUE	0	0	0	3	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	183	0.25	0.01	0.013	0.013	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	YKG1_CENTRAL_NERVOUS_SYSTEM	0.01	0.25	0.026	FALSE	0	48	1	163	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	5	59	0.29	0.03	0.013	0.013	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	YKG1_CENTRAL_NERVOUS_SYSTEM	0.03	0.29	0.026	FALSE	0	23	1	67	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	SPRED1--SCFD1	1	1	SPRED1	4131	chr15:38591748:+	SCFD1	28423	chr14:31112522:+	ONLY_REF_SPLICE	NO	160	80	0.01	0.02	0.013	0.013	SPRED1->chr15:38544527-38649450:+,sprouty_related_EVH1_domain_containing_1,SCFD1->chr14:31091318-31205018:+,sec1_family_domain_containing_1	YKG1_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000570
YKG1_CENTRAL_NERVOUS_SYSTEM	WWOX--VAT1L	1	1	WWOX	23541	chr16:78466649:+	VAT1L	42429	chr16:78005747:+	ONLY_REF_SPLICE	YES	32	0	0.06	1	0.013	0.013	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	YKG1_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.026	TRUE	0	1	0	1	1	TRUE	ACH-000570
SNU1196_BILIARY_TRACT	TIMM23B--LINC00843	192	38	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.8622	0.3686	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU1196_BILIARY_TRACT	1	1	2.2308	TRUE	508	994	45	981	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	PRKRIR--C11orf30	109	73	PRKRIR	4518	chr11:76075382:-	C11orf30	23642	chr11:76169227:+	ONLY_REF_SPLICE	YES	148	18	0.55	0.91	1.0572	0.708	LOCAL_INVERSION:-:+:[63952],PRKRIR->chr11:76061000-76092015:-,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	SNU1196_BILIARY_TRACT	0.55	0.91	1.7652	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	DPP8--RPL24P4	115	42	DPP8	16197	chr15:65766547:-	RPL24P4	32936	chr6:42924474:-	INCL_NON_REF_SPLICE	YES	36	0	0.81	1	1.1154	0.4073	DPP8->chr15:65734801-65810042:-,dipeptidyl_peptidase_8,RPL24P4->chr6:42924083-42924503:-,ribosomal_protein_L24_pseudogene_4	SNU1196_BILIARY_TRACT	0.81	1	1.5227	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	TIMM23--RP11-464F9.1	112	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	165	4	0.41	0.97	1.0863	0.0291	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU1196_BILIARY_TRACT	0.41	0.97	1.1154	TRUE	519	3926	326	965	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	PRKRIR--C11orf30	89	48	PRKRIR	3423	chr11:76076896:-	C11orf30	23642	chr11:76169227:+	ONLY_REF_SPLICE	YES	116	18	0.54	0.88	0.8632	0.4655	LOCAL_INVERSION:-:+:[63952],PRKRIR->chr11:76061000-76092015:-,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	SNU1196_BILIARY_TRACT	0.54	0.88	1.3287	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	PHACTR4--SMPDL3B	61	16	PHACTR4	2277	chr1:28733974:+	SMPDL3B	31109	chr1:28271743:+	ONLY_REF_SPLICE	YES	104	76	0.43	0.5	0.5916	0.1552	PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4,SMPDL3B->chr1:28261504-28285668:+,sphingomyelin_phosphodiesterase_acid_like_3B	SNU1196_BILIARY_TRACT	0.43	0.5	0.7468	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	ZNF654--HMGB2	54	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5237	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU1196_BILIARY_TRACT	1	1	0.5237	TRUE	0	0	0	518	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	CTD-2547E10.2--EEF2K	44	10	CTD-2547E10.2	1617	chr16:21531149:-	EEF2K	35295	chr16:22255951:+	ONLY_REF_SPLICE	YES	19	11	0.74	0.83	0.4267	0.097	CTD-2547E10.2->chr16:21458004-21531765:-,EEF2K->chr16:22217603-22298554:+,eukaryotic_elongation_factor_2_kinase	SNU1196_BILIARY_TRACT	0.74	0.83	0.5237	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	RP11-114H23.1--RP11-114H23.2	36	20	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	4	0	0.93	1	0.3492	0.194	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU1196_BILIARY_TRACT	0.93	1	0.5432	FALSE	81	155	12	160	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	C11orf30--GRM5	38	7	C11orf30	11007	chr11:76175124:+	GRM5	46172	chr11:88386571:-	ONLY_REF_SPLICE	YES	7	0	0.87	1	0.3686	0.0679	C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+,GRM5->chr11:88237744-88799113:-,glutamate_metabotropic_receptor_5	SNU1196_BILIARY_TRACT	0.87	1	0.4365	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	MT-TA--MT-TC	36	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3492	0.0582	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1196_BILIARY_TRACT	1	1	0.4074	FALSE	462	80	0	856	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	PRKRIR--C11orf30	15	76	PRKRIR	4518	chr11:76075382:-	C11orf30	22578	chr11:76165793:+	ONLY_REF_SPLICE	YES	148	21	0.38	0.81	0.1455	0.7371	LOCAL_INVERSION:-:+:[63952],PRKRIR->chr11:76061000-76092015:-,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	SNU1196_BILIARY_TRACT	0.38	0.81	0.8826	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	DPP8--RPL24P4	23	40	DPP8	16197	chr15:65766547:-	RPL24P4	32950	chr6:42924460:-	INCL_NON_REF_SPLICE	YES	36	0	0.64	1	0.2231	0.388	DPP8->chr15:65734801-65810042:-,dipeptidyl_peptidase_8,RPL24P4->chr6:42924083-42924503:-,ribosomal_protein_L24_pseudogene_4	SNU1196_BILIARY_TRACT	0.64	1	0.6111	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	CTD-2547E10.2--EEF2K	27	13	CTD-2547E10.2	3162	chr16:21513098:-	EEF2K	35295	chr16:22255951:+	ONLY_REF_SPLICE	YES	23	11	0.63	0.78	0.2619	0.1261	CTD-2547E10.2->chr16:21458004-21531765:-,EEF2K->chr16:22217603-22298554:+,eukaryotic_elongation_factor_2_kinase	SNU1196_BILIARY_TRACT	0.63	0.78	0.388	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	MT-ND5--MT-ATP8	27	6	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1411	12	0.02	0.73	0.2619	0.0582	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1196_BILIARY_TRACT	0.02	0.73	0.3201	FALSE	43	37	8	105	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	ARHGAP32--KCNJ1	26	9	ARHGAP32	11188	chr11:128932175:-	KCNJ1	40464	chr11:128710159:-	ONLY_REF_SPLICE	YES	2	4	0.95	0.9	0.2522	0.0873	NEIGHBORS[97687],ARHGAP32->Rho_GTPase_activating_protein_32,chr11:128834955-129149219:-,KCNJ1->chr11:128706210-128737268:-,potassium_voltage-gated_channel_subfamily_J_member_1	SNU1196_BILIARY_TRACT	0.9	0.95	0.3395	FALSE	0	0	0	1	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	HSPBP1--GRK5	20	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.194	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU1196_BILIARY_TRACT	1	1	0.194	TRUE	1	39	0	134	39	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	PRKRIR--C11orf30	1	73	PRKRIR	4518	chr11:76075382:-	C11orf30	23620	chr11:76169205:+	ONLY_REF_SPLICE	NO	148	18	0.33	0.8	0.0097	0.708	LOCAL_INVERSION:-:+:[63952],PRKRIR->chr11:76061000-76092015:-,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	SNU1196_BILIARY_TRACT	0.33	0.8	0.7177	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	DPP8--RPL24P4	14	20	DPP8	15117	chr15:65771218:-	RPL24P4	32936	chr6:42924474:-	INCL_NON_REF_SPLICE	YES	40	0	0.46	1	0.1358	0.194	DPP8->chr15:65734801-65810042:-,dipeptidyl_peptidase_8,RPL24P4->chr6:42924083-42924503:-,ribosomal_protein_L24_pseudogene_4	SNU1196_BILIARY_TRACT	0.46	1	0.3298	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	C15orf57--CBX3	15	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	15	40	0.62	0.38	0.1455	0.0873	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1196_BILIARY_TRACT	0.38	0.62	0.2328	TRUE	267	562	48	632	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	ARHGAP32--KCNJ1	12	13	ARHGAP32	11188	chr11:128932175:-	KCNJ1	38141	chr11:128720785:-	ONLY_REF_SPLICE	YES	2	1	0.93	0.96	0.1164	0.1261	NEIGHBORS[97687],ARHGAP32->Rho_GTPase_activating_protein_32,chr11:128834955-129149219:-,KCNJ1->chr11:128706210-128737268:-,potassium_voltage-gated_channel_subfamily_J_member_1	SNU1196_BILIARY_TRACT	0.93	0.96	0.2425	FALSE	0	0	0	1	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	NPM1P24--SET	15	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	18	1490	0.47	0.01	0.1455	0.0097	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1196_BILIARY_TRACT	0.01	0.47	0.1552	TRUE	0	0	0	434	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	PRKRIR--C11orf30	3	49	PRKRIR	3423	chr11:76076896:-	C11orf30	22578	chr11:76165793:+	ONLY_REF_SPLICE	YES	116	21	0.31	0.71	0.0291	0.4752	LOCAL_INVERSION:-:+:[63952],PRKRIR->chr11:76061000-76092015:-,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	SNU1196_BILIARY_TRACT	0.31	0.71	0.5043	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	SLC1A5--MT-ND4L	15	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1455	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1196_BILIARY_TRACT	1	1	0.1455	FALSE	0	0	0	189	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	EYA3--RP1-27O5.3	12	9	EYA3	3318	chr1:28374894:-	RP1-27O5.3	35237	chr1:33002086:+	ONLY_REF_SPLICE	YES	20	0	0.51	1	0.1164	0.0873	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,RP1-27O5.3->chr1:32930658-33066393:+	SNU1196_BILIARY_TRACT	0.51	1	0.2037	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	DPP8--RPL24P4	3	42	DPP8	16197	chr15:65766547:-	RPL24P4	32923	chr6:42924487:-	INCL_NON_REF_SPLICE	YES	36	0	0.56	1	0.0291	0.4073	DPP8->chr15:65734801-65810042:-,dipeptidyl_peptidase_8,RPL24P4->chr6:42924083-42924503:-,ribosomal_protein_L24_pseudogene_4	SNU1196_BILIARY_TRACT	0.56	1	0.4364	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	DPP8--RPL24P4	3	42	DPP8	16197	chr15:65766547:-	RPL24P4	32905	chr6:42924505:-	INCL_NON_REF_SPLICE	YES	36	0	0.56	1	0.0291	0.4073	DPP8->chr15:65734801-65810042:-,dipeptidyl_peptidase_8,RPL24P4->chr6:42924083-42924503:-,ribosomal_protein_L24_pseudogene_4	SNU1196_BILIARY_TRACT	0.56	1	0.4364	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	NRIP1--AF127936.7	13	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1261	0.0194	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1196_BILIARY_TRACT	1	1	0.1455	FALSE	292	1546	117	613	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	RP11-680G10.1--GSE1	13	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	19	1	0.42	0.1261	0.0097	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1196_BILIARY_TRACT	0.42	1	0.1358	TRUE	465	1949	224	605	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	HSP90AB1--MT-RNR2	12	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3067	0	0	1	0.1164	0.0291	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1196_BILIARY_TRACT	0	1	0.1455	FALSE	13	9	0	364	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	MT-ND5--MT-ATP8	11	6	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3	3	0.85	0.85	0.1067	0.0582	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1196_BILIARY_TRACT	0.85	0.85	0.1649	FALSE	43	37	8	105	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	RP11-114H23.1--RP11-114H23.2	7	16	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.0679	0.1552	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU1196_BILIARY_TRACT	0.85	1	0.2231	FALSE	81	155	12	160	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	ZC3H7A--BCAR4	11	0	ZC3H7A	1144	chr16:11890980:-	BCAR4	32219	chr16:11914154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1067	0	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU1196_BILIARY_TRACT	1	1	0.1067	TRUE	0	12	0	3	12	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	C15orf57--CBX3	8	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	16	40	0.54	0.32	0.0776	0.1067	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1196_BILIARY_TRACT	0.32	0.54	0.1843	TRUE	267	562	48	632	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	NRIP1--AF127936.7	8	9	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.53	1	0.0776	0.0873	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1196_BILIARY_TRACT	0.53	1	0.1649	FALSE	164	806	69	479	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	HSP90AB1--MT-RNR2	9	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3036	0	0	1	0.0873	0.0291	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1196_BILIARY_TRACT	0	1	0.1164	FALSE	13	9	0	364	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	RP11-120D5.1--MID1	9	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	55	0.75	0.18	0.0873	0.0291	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU1196_BILIARY_TRACT	0.18	0.75	0.1164	FALSE	16	356	14	466	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	MT-ND6--MT-TE	7	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0.097	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1196_BILIARY_TRACT	1	1	0.1649	FALSE	499	1288	110	792	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	MT-TL1--MT-RNR2	9	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0873	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1196_BILIARY_TRACT	1	1	0.0873	FALSE	7	521	16	32	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	PHACTR4--SMPDL3B	5	16	PHACTR4	2277	chr1:28733974:+	SMPDL3B	30019	chr1:28268786:+	ONLY_REF_SPLICE	YES	104	81	0.17	0.21	0.0485	0.1552	PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4,SMPDL3B->chr1:28261504-28285668:+,sphingomyelin_phosphodiesterase_acid_like_3B	SNU1196_BILIARY_TRACT	0.17	0.21	0.2037	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	NRIP1--AF127936.7	7	7	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.7	1	0.0679	0.0679	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1196_BILIARY_TRACT	0.7	1	0.1358	FALSE	125	705	46	456	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	MT-ND6--MT-TE	7	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.0679	0.0582	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1196_BILIARY_TRACT	0.87	1	0.1261	FALSE	499	1288	110	792	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	HSPBP1--GRK5	8	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0776	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU1196_BILIARY_TRACT	1	1	0.0776	TRUE	1	39	0	134	39	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	RP11-114H23.1--RP11-114H23.2	4	16	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	6	0	0.77	1	0.0388	0.1552	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU1196_BILIARY_TRACT	0.77	1	0.194	FALSE	5	9	0	20	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	MT-ND6--MT-TE	7	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0.0291	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1196_BILIARY_TRACT	1	1	0.097	FALSE	499	1288	110	792	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	MT-ND6--MT-TE	3	19	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0291	0.1843	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1196_BILIARY_TRACT	1	1	0.2134	FALSE	499	1288	110	792	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	MT-ND1--MT-TL1	4	14	MT-ND1	1342	chrM:3648:+	MT-TL1	5013	chrM:3286:+	INCL_NON_REF_SPLICE	YES	5	0	0.78	1	0.0388	0.1358	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SNU1196_BILIARY_TRACT	0.78	1	0.1746	FALSE	210	95	5	49	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	PHACTR4--SMPDL3B	3	17	PHACTR4	2277	chr1:28733974:+	SMPDL3B	29215	chr1:28267982:+	ONLY_REF_SPLICE	YES	104	81	0.16	0.2	0.0291	0.1649	PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4,SMPDL3B->chr1:28261504-28285668:+,sphingomyelin_phosphodiesterase_acid_like_3B	SNU1196_BILIARY_TRACT	0.16	0.2	0.194	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	HSPBP1--GRK5	7	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU1196_BILIARY_TRACT	1	1	0.0679	TRUE	1	39	0	134	39	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	ZNF654--HMGB2	7	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU1196_BILIARY_TRACT	1	1	0.0679	TRUE	0	0	0	518	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	MT-ND1--MT-TL1	3	14	MT-ND1	1341	chrM:3647:+	MT-TL1	5012	chrM:3285:+	INCL_NON_REF_SPLICE	YES	5	0	0.77	1	0.0291	0.1358	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SNU1196_BILIARY_TRACT	0.77	1	0.1649	FALSE	210	95	5	49	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	MT-TA--MT-TC	5	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0.0582	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1196_BILIARY_TRACT	1	1	0.1067	FALSE	462	80	0	856	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	EYA3--RP1-27O5.3	4	9	EYA3	3318	chr1:28374894:-	RP1-27O5.3	34865	chr1:33001714:+	ONLY_REF_SPLICE	YES	20	0	0.39	1	0.0388	0.0873	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,RP1-27O5.3->chr1:32930658-33066393:+	SNU1196_BILIARY_TRACT	0.39	1	0.1261	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	REV3L--RPL28	6	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	SNU1196_BILIARY_TRACT	1	1	0.0582	TRUE	22	156	2	142	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	RP11-114H23.1--RP11-114H23.2	1	20	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	NO	6	0	0.78	1	0.0097	0.194	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU1196_BILIARY_TRACT	0.78	1	0.2037	FALSE	5	9	0	20	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	EYA3--RP1-27O5.3	4	6	EYA3	3318	chr1:28374894:-	RP1-27O5.3	36317	chr1:33019060:+	ONLY_REF_SPLICE	YES	20	3	0.33	0.77	0.0388	0.0582	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,RP1-27O5.3->chr1:32930658-33066393:+	SNU1196_BILIARY_TRACT	0.33	0.77	0.097	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	MT-ND5--MT-ATP8	4	6	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7	12	0.59	0.45	0.0388	0.0582	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1196_BILIARY_TRACT	0.45	0.59	0.097	FALSE	43	37	8	105	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	RP11-680G10.1--GSE1	5	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	12	1	0.33	0.0485	0.0097	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1196_BILIARY_TRACT	0.33	1	0.0582	TRUE	458	1351	185	561	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	LIF--MT-CO1	5	0	LIF	3257	chr22:30639841:-	MT-CO1	10305	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	LIF->chr22:30636436-30642840:-,leukemia_inhibitory_factor,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1196_BILIARY_TRACT	1	1	0.0485	FALSE	0	0	0	8	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	PRKRIR--C11orf30	4	4	PRKRIR	3423	chr11:76076896:-	C11orf30	27475	chr11:76174865:+	ONLY_REF_SPLICE	YES	116	92	0.06	0.08	0.0388	0.0388	LOCAL_INVERSION:-:+:[63952],PRKRIR->chr11:76061000-76092015:-,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	SNU1196_BILIARY_TRACT	0.06	0.08	0.0776	TRUE	0	0	0	1	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	WTAPP1--RUVBL1	5	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0485	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	SNU1196_BILIARY_TRACT	1	1	0.0485	TRUE	9	252	6	66	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	ARHGAP32--KCNJ1	1	14	ARHGAP32	11188	chr11:128932175:-	KCNJ1	36978	chr11:128736550:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0097	0.1358	NEIGHBORS[97687],ARHGAP32->Rho_GTPase_activating_protein_32,chr11:128834955-129149219:-,KCNJ1->chr11:128706210-128737268:-,potassium_voltage-gated_channel_subfamily_J_member_1	SNU1196_BILIARY_TRACT	0.88	1	0.1455	FALSE	0	0	0	1	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	MT-ND5--MT-ATP8	3	6	MT-ND5	2712	chrM:14048:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	YES	12	9	0.43	0.5	0.0291	0.0582	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1196_BILIARY_TRACT	0.43	0.5	0.0873	FALSE	43	37	8	105	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	MT-TA--MT-TC	3	6	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0291	0.0582	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1196_BILIARY_TRACT	1	1	0.0873	FALSE	462	80	0	856	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	18	1357	0.22	0	0.0388	0.0097	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1196_BILIARY_TRACT	0	0.22	0.0485	FALSE	0	0	0	434	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	ZC3H7A--BCAR4	4	1	ZC3H7A	2049	chr16:11890075:-	BCAR4	32219	chr16:11914154:-	ONLY_REF_SPLICE	YES	7	0	0.42	1	0.0388	0.0097	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU1196_BILIARY_TRACT	0.42	1	0.0485	TRUE	0	12	0	3	12	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	MT-ND5--MT-ATP8	3	4	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	1787	3	0	0.7	0.0291	0.0388	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1196_BILIARY_TRACT	0	0.7	0.0679	FALSE	43	37	8	105	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	CMTM8--CMTM7	3	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	59	97	0.06	0.04	0.0291	0.0097	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	SNU1196_BILIARY_TRACT	0.04	0.06	0.0388	FALSE	118	557	29	88	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	NPM1P24--SET	3	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	18	1219	0.18	0	0.0291	0.0097	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1196_BILIARY_TRACT	0	0.18	0.0388	FALSE	0	0	0	434	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	NPM1P24--SET	3	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	18	1360	0.18	0	0.0291	0.0097	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1196_BILIARY_TRACT	0	0.18	0.0388	FALSE	0	0	0	434	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	18	1361	0.18	0	0.0291	0.0097	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1196_BILIARY_TRACT	0	0.18	0.0388	FALSE	0	0	0	434	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	RP11-114H23.1--RP11-114H23.2	2	5	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	4	10	0.64	0.41	0.0194	0.0485	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU1196_BILIARY_TRACT	0.41	0.64	0.0679	FALSE	81	155	12	160	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	RP11-120D5.1--MID1	3	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	55	0.57	0.07	0.0291	0.0097	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU1196_BILIARY_TRACT	0.07	0.57	0.0388	FALSE	0	48	1	163	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	C11orf30--GRM5	3	0	C11orf30	4490	chr11:76164432:+	GRM5	46172	chr11:88386571:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+,GRM5->chr11:88237744-88799113:-,glutamate_metabotropic_receptor_5	SNU1196_BILIARY_TRACT	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	C11orf30--GRM5	3	0	C11orf30	3415	chr11:76163001:+	GRM5	46172	chr11:88386571:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+,GRM5->chr11:88237744-88799113:-,glutamate_metabotropic_receptor_5	SNU1196_BILIARY_TRACT	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0291	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1196_BILIARY_TRACT	1	1	0.0291	FALSE	499	1288	110	792	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1196_BILIARY_TRACT	1	1	0.0291	FALSE	25	145	6	90	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	PRKRIR--C11orf30	1	7	PRKRIR	4518	chr11:76075382:-	C11orf30	27475	chr11:76174865:+	ONLY_REF_SPLICE	YES	148	92	0.05	0.08	0.0097	0.0679	LOCAL_INVERSION:-:+:[63952],PRKRIR->chr11:76061000-76092015:-,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	SNU1196_BILIARY_TRACT	0.05	0.08	0.0776	TRUE	0	0	0	1	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	PHACTR4--SMPDL3B	1	6	PHACTR4	2277	chr1:28733974:+	SMPDL3B	32323	chr1:28275505:+	ONLY_REF_SPLICE	YES	104	131	0.06	0.05	0.0097	0.0582	PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4,SMPDL3B->chr1:28261504-28285668:+,sphingomyelin_phosphodiesterase_acid_like_3B	SNU1196_BILIARY_TRACT	0.05	0.06	0.0679	TRUE	0	0	0	1	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	15	7	0.17	0.3	0.0194	0.0097	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1196_BILIARY_TRACT	0.17	0.3	0.0291	FALSE	8	57	1	47	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	RORA--ANXA2	2	1	RORA	13827	chr15:60884586:-	ANXA2	59082	chr15:60656722:-	ONLY_REF_SPLICE	YES	32	3457	0.09	0	0.0194	0.0097	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	SNU1196_BILIARY_TRACT	0	0.09	0.0291	FALSE	2	1	0	8	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	ZC3H7A--BCAR4	2	1	ZC3H7A	2049	chr16:11890075:-	BCAR4	31097	chr16:11915612:-	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0194	0.0097	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	SNU1196_BILIARY_TRACT	0.3	1	0.0291	TRUE	0	7	0	3	7	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	DANCR--GMDS	2	0	DANCR	1530	chr4:53579126:+	GMDS	18225	chr6:1742820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	SNU1196_BILIARY_TRACT	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	FAM35A--GATAD2A	2	0	FAM35A	3144	chr10:88856746:+	GATAD2A	20833	chr19:19546940:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	FAM35A->chr10:88853918-88951225:+,family_with_sequence_similarity_35_member_A,GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+	SNU1196_BILIARY_TRACT	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000461
SNU1196_BILIARY_TRACT	PINX1--RP1L1	2	0	PINX1	6234	chr8:10683662:-	RP1L1	17312	chr8:10480730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NEIGHBORS[52776],PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	SNU1196_BILIARY_TRACT	1	1	0.0194	FALSE	1	8	0	15	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	PHACTR4--SMPDL3B	1	3	PHACTR4	2277	chr1:28733974:+	SMPDL3B	33492	chr1:28279726:+	ONLY_REF_SPLICE	NO	104	122	0.04	0.03	0.0097	0.0291	PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4,SMPDL3B->chr1:28261504-28285668:+,sphingomyelin_phosphodiesterase_acid_like_3B	SNU1196_BILIARY_TRACT	0.03	0.04	0.0388	TRUE	0	0	0	1	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	RP11-120D5.1--MID1	1	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	NO	4	39	0.5	0.09	0.0097	0.0291	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU1196_BILIARY_TRACT	0.09	0.5	0.0388	FALSE	0	23	1	67	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	CMC2--CDYL2	1	1	CMC2	2457	chr16:81040339:-	CDYL2	19859	chr16:80719026:-	ONLY_REF_SPLICE	YES	176	0	0.01	1	0.0097	0.0097	CMC2->C-x9-C_motif_containing_2,chr16:81009698-81053875:-,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	SNU1196_BILIARY_TRACT	0.01	1	0.0194	FALSE	0	0	0	5	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	CMTM8--CMTM7	1	1	CMTM8	2615	chr3:32399038:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	96	97	0.02	0.02	0.0097	0.0097	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	SNU1196_BILIARY_TRACT	0.02	0.02	0.0194	FALSE	4	30	0	3	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	DCBLD2--MAGI1	1	1	DCBLD2	6582	chr3:98568305:-	MAGI1	50045	chr3:65428524:-	ONLY_REF_SPLICE	NO	551	15	0	0.12	0.0097	0.0097	GTEx&tcga_normals:1/3694=0.03%,DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,MAGI1->chr3:65339200-66024509:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_1	SNU1196_BILIARY_TRACT	0	0.12	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	RORA--ANXA2	1	1	RORA	13827	chr15:60884586:-	ANXA2	53106	chr15:60678285:-	ONLY_REF_SPLICE	YES	32	385	0.06	0.01	0.0097	0.0097	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	SNU1196_BILIARY_TRACT	0.01	0.06	0.0194	FALSE	4	3	0	6	0	FALSE	ACH-000461
SNU1196_BILIARY_TRACT	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	57	0	0.03	1	0.0097	0.0097	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SNU1196_BILIARY_TRACT	0.03	1	0.0194	FALSE	272	151	14	158	0	FALSE	ACH-000461
CALU6_LUNG	MT-ND4--MT-ND4L	2984	62	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	28	0	0.99	1	25.3801	0.5273	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.99	1	25.9074	FALSE	344	827	44	306	0	FALSE	ACH-000264
CALU6_LUNG	RPS25--FOXR1	610	3	RPS25	1410	chr11:118888992:-	FOXR1	7849	chr11:118849492:+	ONLY_REF_SPLICE	YES	66	93	0.9	0.87	5.1883	0.0255	LOCAL_INVERSION:-:+:[34421],RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	CALU6_LUNG	0.87	0.9	5.2138	TRUE	0	0	0	2	0	TRUE	ACH-000264
CALU6_LUNG	RPS25--FOXR1	392	138	RPS25	1734	chr11:118888668:-	FOXR1	7849	chr11:118849492:+	ONLY_REF_SPLICE	YES	2051	93	0.21	0.85	3.3341	1.1737	LOCAL_INVERSION:-:+:[34421],RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	CALU6_LUNG	0.21	0.85	4.5078	TRUE	0	0	0	2	0	TRUE	ACH-000264
CALU6_LUNG	TIMM23B--LINC00843	172	36	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4629	0.3062	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CALU6_LUNG	1	1	1.7691	TRUE	508	994	45	981	0	FALSE	ACH-000264
CALU6_LUNG	HSPBP1--GRK5	114	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9696	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	CALU6_LUNG	1	1	0.9696	TRUE	1	39	0	134	39	FALSE	ACH-000264
CALU6_LUNG	MT-ND6--MT-TE	90	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.7655	0.051	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU6_LUNG	0.99	1	0.8165	FALSE	499	1288	110	792	0	FALSE	ACH-000264
CALU6_LUNG	TIMM23--RP11-464F9.1	89	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	240	5	0.27	0.95	0.757	0.017	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CALU6_LUNG	0.27	0.95	0.774	TRUE	519	3926	326	965	0	FALSE	ACH-000264
CALU6_LUNG	KANSL1--ARL17B	70	28	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	27	23	0.78	0.81	0.5954	0.2382	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	CALU6_LUNG	0.78	0.81	0.8336	TRUE	181	1564	124	196	0	FALSE	ACH-000264
CALU6_LUNG	RPS25--FOXR1	4	254	RPS25	1734	chr11:118888668:-	FOXR1	6473	chr11:118842330:+	INCL_NON_REF_SPLICE	NO	2051	0	0.11	1	0.034	2.1604	LOCAL_INVERSION:-:+:[34421],RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	CALU6_LUNG	0.11	1	2.1944	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	8	230	MT-ND4	1285	chrM:11044:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	30	0	0.89	1	0.068	1.9562	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.89	1	2.0242	FALSE	344	827	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	7	226	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	11	2	0.95	0.99	0.0595	1.9222	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.95	0.99	1.9817	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	ZNF644--DHCR24	59	16	ZNF644	1283	chr1:91487547:-	DHCR24	19933	chr1:55349446:-	ONLY_REF_SPLICE	YES	21	330	0.78	0.19	0.5018	0.1361	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-	CALU6_LUNG	0.19	0.78	0.6379	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	PTMA--PTMS	61	2	PTMA	6054	chr2:232576687:+	PTMS	13973	chr12:6879338:+	INCL_NON_REF_SPLICE	YES	2168	518	0.03	0.11	0.5188	0.017	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CALU6_LUNG	0.03	0.11	0.5358	TRUE	0	0	0	16	0	FALSE	ACH-000264
CALU6_LUNG	MT-TA--MT-TC	59	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5018	0.051	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CALU6_LUNG	1	1	0.5528	FALSE	462	80	0	856	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	3	221	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	12	0	0.95	1	0.0255	1.8797	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.95	1	1.9052	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	4	188	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	8	1	0.96	0.99	0.034	1.599	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.96	0.99	1.633	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	SORL1--PCCA	47	7	SORL1	47923	chr11:121485764:+	PCCA	90804	chr13:101077887:+	ONLY_REF_SPLICE	YES	29	31	0.65	0.64	0.3998	0.0595	{Klijn_CCL:Lung=1},SORL1->Oncogene{Bushman},chr11:121322912-121504402:+,sortilin-related_receptor,_L(DLR_class)_A_repeats_containing,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	CALU6_LUNG	0.64	0.65	0.4593	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	6	165	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	1	0.97	0.99	0.051	1.4034	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.97	0.99	1.4544	FALSE	344	821	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	17	111	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18	0	0.88	1	0.1446	0.9441	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.88	1	1.0887	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	3	164	MT-ND4	1093	chrM:10852:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	8	2	0.95	0.99	0.0255	1.3949	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.95	0.99	1.4204	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	14	111	MT-CO3	1220	chrM:9426:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	NO	18	0	0.87	1	0.1191	0.9441	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.87	1	1.0632	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	STK17B--HECW2	39	11	STK17B	8253	chr2:197021163:-	HECW2	48650	chr2:197092978:-	ONLY_REF_SPLICE	YES	44	2	0.53	0.96	0.3317	0.0936	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[17867],STK17B->chr2:196998290-197041227:-,serine/threonine_kinase_17b,HECW2->HECT,_C2_and_WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr2:197059094-197458416:-	CALU6_LUNG	0.53	0.96	0.4253	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	ARID5B--LRRC20	37	15	ARID5B	2114	chr10:63662172:+	LRRC20	27183	chr10:72061264:-	ONLY_REF_SPLICE	YES	10	11	0.84	0.83	0.3147	0.1276	ARID5B->AT-rich_interaction_domain_5B,chr10:63661059-63856703:+,LRRC20->chr10:72058729-72142382:-,leucine_rich_repeat_containing_20	CALU6_LUNG	0.83	0.84	0.4423	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	30	43	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	7447	0	0.01	1	0.2552	0.3657	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.01	1	0.6209	FALSE	344	827	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND6--MT-TE	37	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.3147	0.068	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU6_LUNG	0.98	1	0.3827	FALSE	499	1288	110	792	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	4	121	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	15	1	0.89	0.99	0.034	1.0292	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.89	0.99	1.0632	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	3	125	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	11	2	0.92	0.98	0.0255	1.0632	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.92	0.98	1.0887	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	6	112	MT-CO3	1642	chrM:9848:+	MT-ATP6	4943	chrM:8685:+	INCL_NON_REF_SPLICE	YES	0	50	1	0.7	0.051	0.9526	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.7	1	1.0036	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	CDC5L--RP11-444E17.6	32	4	CDC5L	11320	chr6:44390546:+	RP11-444E17.6	27091	chr6:44320463:+	ONLY_REF_SPLICE	YES	44	0	0.45	1	0.2722	0.034	LOCAL_REARRANGEMENT:+:[8568],CDC5L->cell_division_cycle_5_like,chr6:44355262-44418163:+,RP11-444E17.6->chr6:44240931-44346694:+	CALU6_LUNG	0.45	1	0.3062	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	7	99	MT-CO3	1642	chrM:9848:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	0	57	1	0.65	0.0595	0.842	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.65	1	0.9015	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	9	88	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	14	75	0.87	0.56	0.0765	0.7485	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.56	0.87	0.825	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND6--MT-TE	25	23	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.2126	0.1956	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU6_LUNG	0.94	1	0.4082	FALSE	499	1288	110	792	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	14	63	MT-CO3	1072	chrM:9278:+	MT-ATP6	5069	chrM:8811:+	INCL_NON_REF_SPLICE	YES	3	50	0.96	0.61	0.1191	0.5358	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.61	0.96	0.6549	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	8	86	MT-CO3	1138	chrM:9344:+	MT-ATP6	5065	chrM:8807:+	INCL_NON_REF_SPLICE	NO	13	51	0.88	0.65	0.068	0.7315	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.65	0.88	0.7995	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	13	65	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	12278	0	0.01	1	0.1106	0.5528	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.01	1	0.6634	FALSE	328	800	43	304	0	FALSE	ACH-000264
CALU6_LUNG	UGGT2--GRIK4	28	4	UGGT2	1328	chr13:96705409:-	GRIK4	55120	chr11:120673402:+	ONLY_REF_SPLICE	YES	147	0	0.18	1	0.2382	0.034	UGGT2->UDP-glucose_glycoprotein_glucosyltransferase_2,chr13:96453834-96705736:-,GRIK4->chr11:120382468-120859613:+,glutamate_ionotropic_receptor_kainate_type_subunit_4	CALU6_LUNG	0.18	1	0.2722	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	9	79	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	15	12	0.85	0.88	0.0765	0.6719	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.85	0.88	0.7484	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	16	43	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	227	0	0.21	1	0.1361	0.3657	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.21	1	0.5018	FALSE	344	827	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	5	82	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	30	13	0.74	0.87	0.0425	0.6974	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.74	0.87	0.7399	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	7	74	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	4	61	0.95	0.57	0.0595	0.6294	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.57	0.95	0.6889	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	3	88	MT-CO3	1126	chrM:9332:+	MT-ATP6	4943	chrM:8685:+	INCL_NON_REF_SPLICE	YES	10	50	0.9	0.65	0.0255	0.7485	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.65	0.9	0.774	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	6	74	MT-CO3	1083	chrM:9289:+	MT-ATP6	4961	chrM:8703:+	INCL_NON_REF_SPLICE	YES	4	56	0.95	0.59	0.051	0.6294	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.59	0.95	0.6804	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	3	85	MT-CO3	1123	chrM:9329:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	NO	11	57	0.89	0.61	0.0255	0.723	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.61	0.89	0.7485	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	3	82	MT-CO3	1220	chrM:9426:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	18	12	0.83	0.88	0.0255	0.6974	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.83	0.88	0.7229	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	3	82	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	13	87	0.87	0.49	0.0255	0.6974	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.49	0.87	0.7229	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	3	82	MT-CO3	1220	chrM:9426:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	NO	18	11	0.83	0.89	0.0255	0.6974	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.83	0.89	0.7229	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	3	79	MT-CO3	1141	chrM:9347:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	15	11	0.85	0.88	0.0255	0.6719	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.85	0.88	0.6974	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	3	76	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	NO	4	9	0.95	0.9	0.0255	0.6464	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.9	0.95	0.6719	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	6	62	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	3	11	0.96	0.86	0.051	0.5273	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.86	0.96	0.5783	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	20	4	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	16	0	0.6	1	0.1701	0.034	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.6	1	0.2041	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	3	71	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	4	11	0.95	0.87	0.0255	0.6039	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.87	0.95	0.6294	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	10	43	MT-ND4	1452	chrM:11211:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	173	0	0.23	1	0.0851	0.3657	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.23	1	0.4508	FALSE	344	827	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	3	70	MT-ND4	1093	chrM:10852:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	8	0	0.9	1	0.0255	0.5954	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.9	1	0.6209	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	5	62	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	19	0	0.78	1	0.0425	0.5273	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.78	1	0.5698	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	4	64	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	397	0	0.15	1	0.034	0.5443	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.15	1	0.5783	FALSE	344	827	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	3	67	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	5	2	0.93	0.97	0.0255	0.5699	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.93	0.97	0.5954	FALSE	344	821	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	4	62	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	17	0	0.8	1	0.034	0.5273	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.8	1	0.5613	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	3	65	MT-CO3	1072	chrM:9278:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	3	0	0.96	1	0.0255	0.5528	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.96	1	0.5783	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND6--MT-TE	3	61	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0.5188	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU6_LUNG	1	1	0.5443	FALSE	499	1288	110	792	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	7	43	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	20	0	0.71	1	0.0595	0.3657	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.71	1	0.4252	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	TMEM135--DLG2	17	2	TMEM135	5670	chr11:86868448:+	DLG2	46644	chr11:83962334:-	ONLY_REF_SPLICE	YES	56	0	0.25	1	0.1446	0.017	TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	CALU6_LUNG	0.25	1	0.1616	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	15	9	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	13	2	0.65	0.92	0.1276	0.0765	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.65	0.92	0.2041	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MIPEPP3--ABHD12	17	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1446	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	CALU6_LUNG	1	1	0.1446	TRUE	64	202	9	44	0	FALSE	ACH-000264
CALU6_LUNG	PTMA--PTMS	17	0	PTMA	6024	chr2:232576657:+	PTMS	13970	chr12:6879335:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1446	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CALU6_LUNG	1	1	0.1446	TRUE	0	0	0	16	0	TRUE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	4	49	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	NO	4	2	0.93	0.96	0.034	0.4168	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.93	0.96	0.4508	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	7	37	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	16	0	0.73	1	0.0595	0.3147	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.73	1	0.3742	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	5	43	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	15	0	0.76	1	0.0425	0.3657	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.76	1	0.4082	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-TA--MT-TC	15	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1276	0.0255	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CALU6_LUNG	1	1	0.1531	FALSE	462	80	0	856	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	3	50	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	8	0	0.87	1	0.0255	0.4253	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.87	1	0.4508	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	NPM1P24--SET	15	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1276	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CALU6_LUNG	1	1	0.1276	TRUE	0	0	0	434	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	4	43	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	21	0	0.69	1	0.034	0.3657	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.69	1	0.3997	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	5	39	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	4	2	0.92	0.96	0.0425	0.3317	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.92	0.96	0.3742	FALSE	344	821	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND6--MT-TE	5	36	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.0425	0.3062	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU6_LUNG	0.93	1	0.3487	FALSE	499	1288	110	792	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	3	43	MT-ND4	1114	chrM:10873:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	12	0	0.79	1	0.0255	0.3657	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.79	1	0.3912	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	CTD-2008L17.1--RP11-456O19.2	13	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	6	0	0.7	1	0.1106	0.0085	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	CALU6_LUNG	0.7	1	0.1191	FALSE	20	187	4	79	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	5	33	MT-ND4	1093	chrM:10852:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8	0	0.83	1	0.0425	0.2807	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.83	1	0.3232	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND6--MT-TE	5	32	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0425	0.2722	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU6_LUNG	0.97	1	0.3147	FALSE	499	1288	110	792	0	FALSE	ACH-000264
CALU6_LUNG	MT-TA--MT-TC	13	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1106	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CALU6_LUNG	1	1	0.1106	FALSE	462	80	0	856	0	FALSE	ACH-000264
CALU6_LUNG	RP11-680G10.1--GSE1	12	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	73	1	0.17	0.1021	0.0255	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CALU6_LUNG	0.17	1	0.1276	TRUE	465	1949	224	605	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND6--MT-TE	3	36	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.0255	0.3062	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU6_LUNG	0.93	1	0.3317	FALSE	499	1288	110	792	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND6--MT-TE	3	36	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.0255	0.3062	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU6_LUNG	0.93	1	0.3317	FALSE	499	1288	110	792	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	6	23	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	32	0	0.48	1	0.051	0.1956	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.48	1	0.2466	FALSE	344	827	44	306	0	FALSE	ACH-000264
CALU6_LUNG	ZNF644--DHCR24	7	18	ZNF644	2000	chr1:91486830:-	DHCR24	19933	chr1:55349446:-	ONLY_REF_SPLICE	YES	25	330	0.5	0.07	0.0595	0.1531	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-	CALU6_LUNG	0.07	0.5	0.2126	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	MT-CO2--MT-CO1	7	17	MT-CO2	1345	chrM:7930:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	10	15299	0.71	0	0.0595	0.1446	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	0	0.71	0.2041	FALSE	36	10	0	27	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND6--MT-TE	3	31	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	6	0	0.85	1	0.0255	0.2637	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU6_LUNG	0.85	1	0.2892	FALSE	499	1288	110	792	0	FALSE	ACH-000264
CALU6_LUNG	RP11-680G10.1--GSE1	10	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.72	0.0851	0.0255	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CALU6_LUNG	0.72	1	0.1106	TRUE	458	1351	185	561	0	FALSE	ACH-000264
CALU6_LUNG	CASC9--RP11-300E4.2	10	2	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	30	0	0.29	1	0.0851	0.017	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	CALU6_LUNG	0.29	1	0.1021	TRUE	0	23	0	19	23	TRUE	ACH-000264
CALU6_LUNG	PTMA--PTMS	10	2	PTMA	6053	chr2:232576686:+	PTMS	13737	chr12:6879102:+	INCL_NON_REF_SPLICE	YES	2155	458	0.01	0.03	0.0851	0.017	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CALU6_LUNG	0.01	0.03	0.1021	TRUE	0	0	0	16	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO2--MT-CO1	7	12	MT-CO2	1282	chrM:7867:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	22	15299	0.46	0	0.0595	0.1021	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	0	0.46	0.1616	FALSE	36	10	0	27	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	10	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0851	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	1	1	0.0851	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MTATP6P1--MT-ND1	10	0	MTATP6P1	1126	chr1:569201:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0851	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CALU6_LUNG	1	1	0.0851	FALSE	16	0	0	13	0	FALSE	ACH-000264
CALU6_LUNG	RP11-96H19.1--RP11-446N19.1	9	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.0765	0.034	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CALU6_LUNG	0.81	1	0.1105	FALSE	515	4851	409	746	0	FALSE	ACH-000264
CALU6_LUNG	ZNF644--DHCR24	5	20	ZNF644	2636	chr1:91486194:-	DHCR24	19933	chr1:55349446:-	INCL_NON_REF_SPLICE	YES	26	330	0.49	0.07	0.0425	0.1701	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-	CALU6_LUNG	0.07	0.49	0.2126	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	3	27	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	8	0	0.79	1	0.0255	0.2296	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.79	1	0.2551	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	4	23	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	19	0	0.59	1	0.034	0.1956	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.59	1	0.2296	FALSE	344	826	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND5--MT-CO1	6	13	MT-ND5	2662	chrM:13998:+	MT-CO1	6245	chrM:6336:+	INCL_NON_REF_SPLICE	YES	1629	15284	0.01	0	0.051	0.1106	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	0	0.01	0.1616	FALSE	8	12	2	9	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND6--MT-TE	6	12	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.051	0.1021	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU6_LUNG	0.9	1	0.1531	FALSE	499	1288	110	792	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND6--MT-TE	3	24	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.87	1	0.0255	0.2041	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU6_LUNG	0.87	1	0.2296	FALSE	499	1288	110	792	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO2--MT-CO1	4	19	MT-CO2	1489	chrM:8074:+	MT-CO1	5621	chrM:6840:+	INCL_NON_REF_SPLICE	YES	14	5979	0.62	0	0.034	0.1616	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	0	0.62	0.1956	FALSE	36	10	0	27	0	FALSE	ACH-000264
CALU6_LUNG	FAM155A--TBC1D4	8	2	FAM155A	3226	chr13:107862932:-	TBC1D4	11324	chr13:75936743:-	ONLY_REF_SPLICE	YES	0	34	1	0.23	0.068	0.017	FAM155A->chr13:107820883-108519083:-,family_with_sequence_similarity_155_member_A,TBC1D4->TBC1_domain_family_member_4,chr13:75858808-76056250:-	CALU6_LUNG	0.23	1	0.085	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	4	18	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	4	3	0.85	0.88	0.034	0.1531	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.85	0.88	0.1871	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-TA--MT-TC	7	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0595	0.051	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CALU6_LUNG	1	1	0.1105	FALSE	462	80	0	856	0	FALSE	ACH-000264
CALU6_LUNG	PTMA--PTMS	8	2	PTMA	6054	chr2:232576687:+	PTMS	13958	chr12:6879323:+	INCL_NON_REF_SPLICE	YES	2168	701	0	0.01	0.068	0.017	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CALU6_LUNG	0	0.01	0.085	FALSE	0	0	0	16	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	8	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.068	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	1	1	0.068	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	8	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.068	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	1	1	0.068	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND6--MT-TE	8	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.068	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU6_LUNG	1	1	0.068	FALSE	499	1288	110	792	0	FALSE	ACH-000264
CALU6_LUNG	REV3L--RPL28	8	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.068	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CALU6_LUNG	1	1	0.068	TRUE	22	156	2	142	0	FALSE	ACH-000264
CALU6_LUNG	PTMA--PTMS	7	3	PTMA	6054	chr2:232576687:+	PTMS	13425	chr12:6878790:+	INCL_NON_REF_SPLICE	YES	2168	223	0	0.04	0.0595	0.0255	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CALU6_LUNG	0	0.04	0.085	FALSE	0	0	0	16	0	FALSE	ACH-000264
CALU6_LUNG	ZNF644--DHCR24	3	19	ZNF644	2126	chr1:91486704:-	DHCR24	19933	chr1:55349446:-	INCL_NON_REF_SPLICE	YES	29	330	0.43	0.06	0.0255	0.1616	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-	CALU6_LUNG	0.06	0.43	0.1871	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	MT-ND5--MT-CO1	4	13	MT-ND5	2730	chrM:14066:+	MT-CO1	6343	chrM:6434:+	INCL_NON_REF_SPLICE	YES	9	15351	0.65	0	0.034	0.1106	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	0	0.65	0.1446	FALSE	8	12	2	9	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND5--MT-CO1	4	13	MT-ND5	2653	chrM:13989:+	MT-CO1	6235	chrM:6326:+	INCL_NON_REF_SPLICE	YES	1808	15490	0.01	0	0.034	0.1106	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	0	0.01	0.1446	FALSE	8	12	2	9	0	FALSE	ACH-000264
CALU6_LUNG	HS6ST3--RPS25	6	4	HS6ST3	1731	chr13:96743823:+	RPS25	7806	chr11:118888255:-	ONLY_REF_SPLICE	YES	24	2022	0.29	0	0.051	0.034	HS6ST3->chr13:96743093-97485671:+,heparan_sulfate_6-O-sulfotransferase_3,RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25	CALU6_LUNG	0	0.29	0.085	FALSE	0	0	0	1	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND5--MT-CO1	5	8	MT-ND5	2112	chrM:13448:+	MT-CO1	6129	chrM:6220:+	INCL_NON_REF_SPLICE	YES	5217	15225	0	0	0.0425	0.068	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	0	0	0.1105	FALSE	8	12	2	9	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND5--MT-CO1	3	15	MT-ND5	2788	chrM:14124:+	MT-CO1	6245	chrM:6336:+	INCL_NON_REF_SPLICE	YES	0	15284	1	0	0.0255	0.1276	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	0	1	0.1531	FALSE	8	12	2	9	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND5--MT-CO1	5	5	MT-ND5	2303	chrM:13639:+	MT-CO1	6455	chrM:6546:+	INCL_NON_REF_SPLICE	YES	2749	16511	0	0	0.0425	0.0425	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	0	0	0.085	FALSE	8	12	2	9	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND5--MT-CO1	3	13	MT-ND5	2707	chrM:14043:+	MT-CO1	6312	chrM:6403:+	INCL_NON_REF_SPLICE	YES	165	15148	0.09	0	0.0255	0.1106	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	0	0.09	0.1361	FALSE	8	12	2	9	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND5--MT-CO1	3	13	MT-ND5	2813	chrM:14149:+	MT-CO1	6343	chrM:6434:+	INCL_NON_REF_SPLICE	YES	0	15351	1	0	0.0255	0.1106	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	0	1	0.1361	FALSE	8	11	2	9	0	FALSE	ACH-000264
CALU6_LUNG	MT-ATP8--MT-CO1	6	0	MT-ATP8	1057	chrM:8422:+	MT-CO1	4907	chrM:6603:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.051	0	LOCAL_REARRANGEMENT:+:[921],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	1	1	0.051	FALSE	3	1	0	9	0	FALSE	ACH-000264
CALU6_LUNG	RP11-108K3.1--GLDN	5	4	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	6	1	0.6	0.0425	0.034	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CALU6_LUNG	0.6	1	0.0765	FALSE	0	19	0	46	0	FALSE	ACH-000264
CALU6_LUNG	RP11-96H19.1--RP11-446N19.1	5	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.0425	0.034	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CALU6_LUNG	0.75	1	0.0765	FALSE	407	2205	196	549	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	5	3	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0425	0.0255	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.8	1	0.068	FALSE	344	821	44	306	0	FALSE	ACH-000264
CALU6_LUNG	PTMA--PTMS	5	3	PTMA	6060	chr2:232576693:+	PTMS	13750	chr12:6879115:+	INCL_NON_REF_SPLICE	YES	2412	516	0	0.02	0.0425	0.0255	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CALU6_LUNG	0	0.02	0.068	FALSE	0	0	0	16	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	5	2	MT-ND4	1009	chrM:10768:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	1	0	0.88	1	0.0425	0.017	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.88	1	0.0595	FALSE	344	821	44	306	0	FALSE	ACH-000264
CALU6_LUNG	OSGEPL1--ORMDL1	5	2	OSGEPL1	9132	chr2:190611765:-	ORMDL1	18292	chr2:190636628:-	INCL_NON_REF_SPLICE	YES	24	169	0.23	0.04	0.0425	0.017	LOCAL_REARRANGEMENT:-:[7096],OSGEPL1->O-sialoglycoprotein_endopeptidase-like_1,chr2:190611386-190627953:-,ORMDL1->ORMDL_sphingolipid_biosynthesis_regulator_1,chr2:190635049-190649097:-	CALU6_LUNG	0.04	0.23	0.0595	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	FTH1--ACTG1	5	1	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	1745	0	0	1	0.0425	0.0085	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	CALU6_LUNG	0	1	0.051	FALSE	0	0	0	64	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO2--MT-CO1	4	5	MT-CO2	1278	chrM:7863:+	MT-CO1	5338	chrM:6557:+	INCL_NON_REF_SPLICE	YES	22	16969	0.29	0	0.034	0.0425	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	0	0.29	0.0765	FALSE	36	10	0	27	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO2--MT-CO1	3	9	MT-CO2	1256	chrM:7841:+	MT-CO1	5313	chrM:6532:+	INCL_NON_REF_SPLICE	YES	22	15272	0.35	0	0.0255	0.0765	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	0	0.35	0.102	FALSE	36	10	0	27	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	4	5	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	27	0	0.25	1	0.034	0.0425	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.25	1	0.0765	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	3	9	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	27	2	0.31	0.86	0.0255	0.0765	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.31	0.86	0.102	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND5--MT-CO1	3	9	MT-ND5	2830	chrM:14166:+	MT-CO1	6455	chrM:6546:+	INCL_NON_REF_SPLICE	NO	0	16511	1	0	0.0255	0.0765	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	0	1	0.102	FALSE	8	10	2	9	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0425	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU6_LUNG	1	1	0.0425	FALSE	499	1288	110	792	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0425	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU6_LUNG	1	1	0.0425	FALSE	499	1288	110	792	0	FALSE	ACH-000264
CALU6_LUNG	RP11-1L12.3--SLC5A12	4	4	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0.034	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	CALU6_LUNG	1	1	0.068	TRUE	3	101	0	60	0	FALSE	ACH-000264
CALU6_LUNG	EEF2--FABP4	4	3	EEF2	3532	chr19:3982936:-	FABP4	13289	chr8:82395468:-	INCL_NON_REF_SPLICE	YES	1946	0	0	1	0.034	0.0255	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,FABP4->chr8:82390654-82395498:-,fatty_acid_binding_protein_4	CALU6_LUNG	0	1	0.0595	FALSE	0	0	0	2	0	FALSE	ACH-000264
CALU6_LUNG	PTMA--PTMS	4	3	PTMA	6060	chr2:232576693:+	PTMS	13416	chr12:6878781:+	INCL_NON_REF_SPLICE	YES	2412	213	0	0.03	0.034	0.0255	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CALU6_LUNG	0	0.03	0.0595	FALSE	0	0	0	16	0	FALSE	ACH-000264
CALU6_LUNG	MT-TA--MT-TC	4	2	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0.017	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CALU6_LUNG	1	1	0.051	FALSE	462	80	0	856	0	FALSE	ACH-000264
CALU6_LUNG	MT-TA--MT-TC	3	6	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0.051	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CALU6_LUNG	1	1	0.0765	FALSE	462	80	0	856	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	3	5	MT-CO3	1181	chrM:9387:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	28	0	0.22	1	0.0255	0.0425	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.22	1	0.068	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	AC131097.3--AC093642.5	3	4	AC131097.3	2273	chr2:242824786:+	AC093642.5	11670	chr2:243037038:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0.034	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	CALU6_LUNG	1	1	0.0595	FALSE	3	20	2	16	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO2--MT-CO1	4	0	MT-CO2	1249	chrM:7834:+	MT-CO1	6196	chrM:7415:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	1	1	0.034	FALSE	36	10	0	27	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	3	4	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0255	0.034	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.78	1	0.0595	FALSE	344	821	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND4--MT-ND4L	3	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.88	0.0255	0.034	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU6_LUNG	0.88	1	0.0595	FALSE	344	821	44	306	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU6_LUNG	1	1	0.034	FALSE	499	1288	110	792	0	FALSE	ACH-000264
CALU6_LUNG	MTATP6P1--MT-ND1	4	0	MTATP6P1	1108	chr1:569183:+	MT-ND1	4706	chrM:3331:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CALU6_LUNG	1	1	0.034	FALSE	16	0	0	13	0	FALSE	ACH-000264
CALU6_LUNG	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4006	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0.0255	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CALU6_LUNG	1	1	0.051	FALSE	462	80	0	856	0	FALSE	ACH-000264
CALU6_LUNG	PTMA--PTMS	3	3	PTMA	6551	chr2:232577184:+	PTMS	13746	chr12:6879111:+	INCL_NON_REF_SPLICE	NO	1858	496	0	0.01	0.0255	0.0255	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CALU6_LUNG	0	0.01	0.051	FALSE	0	0	0	16	0	FALSE	ACH-000264
CALU6_LUNG	PTMA--PTMS	3	3	PTMA	6551	chr2:232577184:+	PTMS	13767	chr12:6879132:+	INCL_NON_REF_SPLICE	NO	1858	571	0	0.01	0.0255	0.0255	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CALU6_LUNG	0	0.01	0.051	FALSE	0	0	0	16	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND5--MT-CO1	3	2	MT-ND5	1586	chrM:12922:+	MT-CO1	6489	chrM:6580:+	INCL_NON_REF_SPLICE	YES	3288	17131	0	0	0.0255	0.017	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	0	0	0.0425	FALSE	4	9	2	7	0	FALSE	ACH-000264
CALU6_LUNG	PTMA--PTMS	3	2	PTMA	6053	chr2:232576686:+	PTMS	13740	chr12:6879105:+	INCL_NON_REF_SPLICE	YES	2155	464	0	0.01	0.0255	0.017	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CALU6_LUNG	0	0.01	0.0425	FALSE	0	0	0	16	0	FALSE	ACH-000264
CALU6_LUNG	CASC9--RP11-300E4.2	3	1	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	8	0	0.33	1	0.0255	0.0085	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	CALU6_LUNG	0.33	1	0.034	TRUE	0	12	0	10	12	TRUE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1158	chrM:9364:+	MT-ATP6	5461	chrM:9203:+	INCL_NON_REF_SPLICE	NO	20	0	0.17	1	0.0255	0.0085	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.17	1	0.034	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	20	0	0.17	1	0.0255	0.0085	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.17	1	0.034	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1083	chrM:9289:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	NO	4	0	0.5	1	0.0255	0.0085	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CALU6_LUNG	0.5	1	0.034	FALSE	189	492	56	216	0	FALSE	ACH-000264
CALU6_LUNG	CMTM8--CMTM7	3	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	CALU6_LUNG	1	1	0.0255	FALSE	118	557	29	88	0	FALSE	ACH-000264
CALU6_LUNG	CTD-2008L17.1--RP11-456O19.2	3	0	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	CALU6_LUNG	1	1	0.0255	FALSE	33	240	4	98	0	FALSE	ACH-000264
CALU6_LUNG	MT-ATP8--MT-CO1	3	0	MT-ATP8	1086	chrM:8451:+	MT-CO1	4721	chrM:6417:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	LOCAL_REARRANGEMENT:+:[921],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CALU6_LUNG	1	1	0.0255	FALSE	3	1	0	9	0	FALSE	ACH-000264
CALU6_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU6_LUNG	1	1	0.0255	FALSE	499	1288	110	792	0	FALSE	ACH-000264
CALU6_LUNG	PVT1--MYC	2	3	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	15	6	0.25	0.45	0.017	0.0255	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CALU6_LUNG	0.25	0.45	0.0425	TRUE	3	14	0	24	0	FALSE	ACH-000264
CALU6_LUNG	TMEM135--DLG2	2	1	TMEM135	4604	chr11:86802437:+	DLG2	46644	chr11:83962334:-	ONLY_REF_SPLICE	YES	33	0	0.08	1	0.017	0.0085	TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	CALU6_LUNG	0.08	1	0.0255	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	C17orf76-AS1--CENPV	2	0	C17orf76-AS1	3309	chr17:16344444:+	CENPV	14833	chr17:16253343:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	LOCAL_INVERSION:+:-:[85166],C17orf76-AS1->chr17:16342136-16381992:+,CENPV->centromere_protein_V,chr17:16245848-16256970:-	CALU6_LUNG	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	ELAVL1--GNG7	2	0	ELAVL1	5763	chr19:8038609:-	GNG7	20389	chr19:2555186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-,GNG7->G_protein_subunit_gamma_7,chr19:2511217-2702707:-	CALU6_LUNG	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	KANSL1--ARL17B	2	0	KANSL1	4754	chr17:44270189:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	CALU6_LUNG	1	1	0.017	TRUE	0	1	0	1	0	FALSE	ACH-000264
CALU6_LUNG	MPHOSPH6--SAMD3	2	0	MPHOSPH6	4051	chr16:82197687:-	SAMD3	30529	chr6:130476170:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	MPHOSPH6->M-phase_phosphoprotein_6,chr16:82181403-82203831:-,SAMD3->chr6:130465460-130686570:-,sterile_alpha_motif_domain_containing_3	CALU6_LUNG	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	RASSF8--ASUN	2	0	RASSF8	9484	chr12:26208379:+	ASUN	38418	chr12:27059370:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	CALU6_LUNG	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000264
CALU6_LUNG	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.0085	0.034	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CALU6_LUNG	0.62	1	0.0425	FALSE	275	511	55	178	0	FALSE	ACH-000264
CALU6_LUNG	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0085	0.034	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CALU6_LUNG	1	1	0.0425	FALSE	467	2173	244	435	0	FALSE	ACH-000264
CALU6_LUNG	PVT1--MYC	1	3	PVT1	1202	chr8:128806980:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	15	6	0.21	0.4	0.0085	0.0255	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CALU6_LUNG	0.21	0.4	0.034	TRUE	3	14	0	24	0	FALSE	ACH-000264
CALU6_LUNG	RPS25--FOXR1	1	3	RPS25	1410	chr11:118888992:-	FOXR1	8024	chr11:118849667:+	ONLY_REF_SPLICE	YES	66	131	0.06	0.03	0.0085	0.0255	LOCAL_INVERSION:-:+:[34421],RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	CALU6_LUNG	0.03	0.06	0.034	TRUE	0	0	0	2	0	FALSE	ACH-000264
CALU6_LUNG	PROSC--CHMP1A	1	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	NO	102	193	0.02	0.01	0.0085	0.0085	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	CALU6_LUNG	0.01	0.02	0.017	FALSE	13	55	3	29	0	FALSE	ACH-000264
CALU6_LUNG	RP11-108K3.1--GLDN	1	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	6	1	0.25	0.0085	0.0085	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CALU6_LUNG	0.25	1	0.017	FALSE	0	30	1	55	0	FALSE	ACH-000264
CALU6_LUNG	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	30	1	0.06	0.0085	0.0085	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CALU6_LUNG	0.06	1	0.017	FALSE	16	356	14	466	0	FALSE	ACH-000264
CALU6_LUNG	RPS25--FOXR1	1	1	RPS25	1734	chr11:118888668:-	FOXR1	9557	chr11:118851200:+	ONLY_REF_SPLICE	YES	2051	79	0	0.02	0.0085	0.0085	LOCAL_INVERSION:-:+:[34421],RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	CALU6_LUNG	0	0.02	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000264
TUHR10TKB_KIDNEY	TIMM23B--LINC00843	27	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3062	0.1588	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TUHR10TKB_KIDNEY	1	1	0.465	TRUE	508	994	45	981	0	FALSE	ACH-000459
TUHR10TKB_KIDNEY	MT-TA--MT-TC	22	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2495	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TUHR10TKB_KIDNEY	1	1	0.2495	FALSE	462	80	0	856	0	FALSE	ACH-000459
TUHR10TKB_KIDNEY	C15orf57--CBX3	16	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	23	12	0.53	0.68	0.1814	0.1134	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TUHR10TKB_KIDNEY	0.53	0.68	0.2948	TRUE	267	562	48	632	0	FALSE	ACH-000459
TUHR10TKB_KIDNEY	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1928	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TUHR10TKB_KIDNEY	1	1	0.1928	TRUE	0	0	0	518	0	FALSE	ACH-000459
TUHR10TKB_KIDNEY	ANKRD46--SNX31	15	6	ANKRD46	10680	chr8:101540073:-	SNX31	35189	chr8:101589303:-	ONLY_REF_SPLICE	YES	6	0	0.78	1	0.1701	0.068	LOCAL_REARRANGEMENT:-:[13104],ANKRD46->ankyrin_repeat_domain_46,chr8:101521980-101572012:-,SNX31->chr8:101585116-101675643:-,sorting_nexin_31	TUHR10TKB_KIDNEY	0.78	1	0.2381	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	CAV1--ZFP36L1	13	0	CAV1	4903	chr7:116199668:+	ZFP36L1	16700	chr14:69255321:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1474	0	CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+,ZFP36L1->Oncogene{Bushman},ZFP36_ring_finger_protein-like_1,chr14:69254377-69263190:-	TUHR10TKB_KIDNEY	1	1	0.1474	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	C15orf57--CBX3	9	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	22	12	0.46	0.61	0.1021	0.1134	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TUHR10TKB_KIDNEY	0.46	0.61	0.2155	TRUE	267	562	48	632	0	FALSE	ACH-000459
TUHR10TKB_KIDNEY	RP11-123O10.4--GRIP1	7	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0794	0.034	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TUHR10TKB_KIDNEY	1	1	0.1134	FALSE	416	2512	207	587	0	FALSE	ACH-000459
TUHR10TKB_KIDNEY	MT-CO1--MT-RNR2	4	2	MT-CO1	1642	chrM:6545:+	MT-RNR2	5587	chrM:1715:+	INCL_NON_REF_SPLICE	YES	6529	0	0	1	0.0454	0.0227	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TUHR10TKB_KIDNEY	0	1	0.0681	FALSE	44	51	6	21	0	FALSE	ACH-000459
TUHR10TKB_KIDNEY	MT-TA--MT-TC	4	1	MT-TA	1075	chrM:5581:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0454	0.0113	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TUHR10TKB_KIDNEY	1	1	0.0567	FALSE	462	80	0	856	0	FALSE	ACH-000459
TUHR10TKB_KIDNEY	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0454	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TUHR10TKB_KIDNEY	1	1	0.0454	FALSE	462	80	0	856	0	FALSE	ACH-000459
TUHR10TKB_KIDNEY	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0454	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TUHR10TKB_KIDNEY	1	1	0.0454	FALSE	292	1546	117	613	0	FALSE	ACH-000459
TUHR10TKB_KIDNEY	AKAP8--AKAP8L	3	1	AKAP8	6496	chr19:15482763:-	AKAP8L	30887	chr19:15491423:-	ONLY_REF_SPLICE	YES	37	30	0.1	0.12	0.034	0.0113	PROTCLUST,LOCAL_REARRANGEMENT:-:[250],AKAP8->A-kinase_anchoring_protein_8,chr19:15464196-15490609:-,AKAP8L->A-kinase_anchoring_protein_8_like,chr19:15490859-15529952:-	TUHR10TKB_KIDNEY	0.1	0.12	0.0453	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	CTC-459F4.3--AIFM2	3	0	CTC-459F4.3	1147	chr19:28284517:+	AIFM2	15657	chr10:71883853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	CTC-459F4.3->chr19:28284371-28409771:+,AIFM2->Oncogene{Bushman},apoptosis_inducing_factor,_mitochondria_associated_2,chr10:71857979-71892690:-	TUHR10TKB_KIDNEY	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	EGLN2--GAPDH	3	0	EGLN2	8507	chr19:41313131:+	GAPDH	16865	chr12:6647267:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	EGLN2->chr19:41304901-41314338:+,egl-9_family_hypoxia_inducible_factor_2,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	TUHR10TKB_KIDNEY	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	HMOX1--ACAT2	3	0	HMOX1	4151	chr22:35782738:+	ACAT2	12508	chr6:160183108:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	HMOX1->chr22:35776354-35790207:+,heme_oxygenase_1,ACAT2->acetyl-CoA_acetyltransferase_2,chr6:160181360-160200144:+	TUHR10TKB_KIDNEY	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	TOR1A--COL6A2	3	0	TOR1A	5100	chr9:132580859:-	COL6A2	16481	chr21:47535919:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	TOR1A->chr9:132575223-132586413:-,torsin_family_1_member_A,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	TUHR10TKB_KIDNEY	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	AHNAK--RER1	2	0	AHNAK	2224	chr11:62314132:-	RER1	34171	chr1:2327223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:1/3694=0.03%,AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-,RER1->chr1:2323267-2336883:+,retention_in_endoplasmic_reticulum_sorting_receptor_1	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	CASD1--KIFAP3	2	0	CASD1	5852	chr7:94157562:+	KIFAP3	48928	chr1:169930376:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	CASD1->CAS1_domain_containing_1,chr7:94138531-94186331:+,KIFAP3->chr1:169890467-170054349:-,kinesin_associated_protein_3	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	CCM2L--ANKS6	2	0	CCM2L	7021	chr20:30613722:+	ANKS6	28867	chr9:101513378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	CCM2L->CCM2_like_scaffolding_protein,chr20:30598245-30619984:+,ANKS6->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_6,chr9:101493611-101559247:-	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	ENOSF1--IER3IP1	2	0	ENOSF1	2637	chr18:706470:-	IER3IP1	26473	chr18:44683908:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ENOSF1->chr18:670324-712676:-,enolase_superfamily_member_1,IER3IP1->chr18:44661027-44702652:-,chr18:44681413-44702745:-,immediate_early_response_3_interacting_protein_1	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	HRH1--PSMG3	2	0	HRH1	1307	chr3:11179085:+	PSMG3	15556	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	HRH1->chr3:11178779-11305243:+,histamine_receptor_H1,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	IQCG--QRICH2	2	0	IQCG	15730	chr3:197639546:-	QRICH2	27964	chr17:74290102:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	IQCG->IQ_motif_containing_G,chr3:197615946-197687013:-,QRICH2->chr17:74270130-74303761:-,glutamine_rich_2	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	LIG3--RAD51L3-RFFL	2	0	LIG3	17521	chr17:33329808:+	RAD51L3-RFFL	30473	chr17:33353580:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_INVERSION:+:-:[6285],LIG3->DNA_ligase_3,chr17:33307513-33332083:+,RAD51L3-RFFL->chr17:33338368-33448512:-	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	LUC7L3--FAM53A	2	0	LUC7L3	1288	chr17:48797192:+	FAM53A	34395	chr4:1619838:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LUC7L3->LUC7_like_3_pre-mRNA_splicing_factor,chr17:48796905-48833574:+,FAM53A->chr4:1619642-1686029:-,family_with_sequence_similarity_53_member_A	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	OGFOD3--METRNL	2	0	OGFOD3	2462	chr17:80373274:-	METRNL	24317	chr17:81050912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-,METRNL->chr17:81037567-81052864:+,meteorin,_glial_cell_differentiation_regulator-like	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	RANBP17--G3BP1	2	0	RANBP17	21762	chr5:170455993:+	G3BP1	51996	chr5:151166133:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RANBP17->Oncogene{Bushman},RAN_binding_protein_17,chr5:170288874-170727019:+,G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	RCC1--PRKD3	2	0	RCC1	2175	chr1:28834672:+	PRKD3	23147	chr2:37520414:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,PRKD3->chr2:37477645-37551951:-,protein_kinase_D3	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	RLF--MYCL	2	0	RLF	1264	chr1:40627308:+	MYCL	18060	chr1:40367115:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	6	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TUHR10TKB_KIDNEY	1	1	0.0227	FALSE	515	4851	409	746	0	FALSE	ACH-000459
TUHR10TKB_KIDNEY	SOCS5--TTC7A	2	0	SOCS5	1498	chr2:46926588:+	TTC7A	13783	chr2:47177502:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_FI:{Nerve=[count:2=pct:1.2],Brain=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},SOCS5->chr2:46926091-46990268:+,suppressor_of_cytokine_signaling_5,TTC7A->chr2:47143296-47303276:+,tetratricopeptide_repeat_domain_7A	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	5	3	1	3	0	FALSE	ACH-000459
TUHR10TKB_KIDNEY	SPTLC1--ACVR1	2	0	SPTLC1	7135	chr9:94841716:-	ACVR1	27667	chr2:158675071:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	SPTLC1->chr9:94794281-94877666:-,serine_palmitoyltransferase_long_chain_base_subunit_1,ACVR1->activin_A_receptor_type_1,chr2:158592958-158732374:-	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	STK25--PTMA	2	0	STK25	2725	chr2:242447421:-	PTMA	21539	chr2:232576058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	STK25->chr2:242432089-242449145:-,serine/threonine_kinase_25,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	2	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	TICAM1--SRP68	2	0	TICAM1	1091	chr19:4831626:-	SRP68	19657	chr17:74044051:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1,SRP68->chr17:74035184-74068734:-,signal_recognition_particle_68	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	UBA1--FTSJ1	2	0	UBA1	10289	chrX:47063095:+	FTSJ1	27738	chrX:48341374:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	UBA1->chrX:47050260-47074527:+,ubiquitin_like_modifier_activating_enzyme_1,FTSJ1->FtsJ_RNA_methyltransferase_homolog_1_(E._coli),chrX:48334541-48344752:+	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	UBAP1--GPI	2	0	UBAP1	1236	chr9:34179238:+	GPI	20807	chr19:34868640:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	ZNF599--RP4-694B14.5	2	0	ZNF599	4117	chr19:35258221:-	RP4-694B14.5	17330	chr20:25614685:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ZNF599->chr19:35248981-35264134:-,zinc_finger_protein_599,RP4-694B14.5->chr20:25604681-25658710:+	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	ZNF749--IMMP2L	2	0	ZNF749	1265	chr19:57946961:+	IMMP2L	10612	chr7:111201979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ZNF749->chr19:57946697-57956853:+,zinc_finger_protein_749,IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	ZNRF1--USP7	2	0	ZNRF1	2066	chr16:75033993:+	USP7	26706	chr16:9024254:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ZNRF1->chr16:75032928-75144892:+,zinc_and_ring_finger_1,_E3_ubiquitin_protein_ligase,USP7->Oncogene{Bushman},chr16:8985951-9058371:-,ubiquitin_specific_peptidase_7_(herpes_virus-associated)	TUHR10TKB_KIDNEY	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	ANKRD46--SNX31	1	3	ANKRD46	10680	chr8:101540073:-	SNX31	36246	chr8:101586188:-	ONLY_REF_SPLICE	YES	6	0	0.4	1	0.0113	0.034	LOCAL_REARRANGEMENT:-:[13104],ANKRD46->ankyrin_repeat_domain_46,chr8:101521980-101572012:-,SNX31->chr8:101585116-101675643:-,sorting_nexin_31	TUHR10TKB_KIDNEY	0.4	1	0.0453	TRUE	0	0	0	1	0	TRUE	ACH-000459
TUHR10TKB_KIDNEY	CCT3--HSPG2	1	1	CCT3	2442	chr1:156307945:-	HSPG2	38800	chr1:22192302:-	ONLY_REF_SPLICE	YES	159	134	0.01	0.01	0.0113	0.0113	CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-,HSPG2->Oncogene{Bushman},chr1:22148738-22263790:-,heparan_sulfate_proteoglycan_2	TUHR10TKB_KIDNEY	0.01	0.01	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000459
TUHR10TKB_KIDNEY	CHST11--SLC41A2	1	1	CHST11	5138	chr12:104995769:+	SLC41A2	20070	chr12:105303540:-	ONLY_REF_SPLICE	YES	48	38	0.04	0.05	0.0113	0.0113	{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[40539],CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,SLC41A2->chr12:105196331-105352522:-,solute_carrier_family_41_member_2	TUHR10TKB_KIDNEY	0.04	0.05	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000459
TUHR10TKB_KIDNEY	SPATS2--RINT1	1	1	SPATS2	3067	chr12:49765073:+	RINT1	35652	chr7:105182855:+	ONLY_REF_SPLICE	YES	46	18	0.04	0.1	0.0113	0.0113	SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2,RINT1->RAD50_interactor_1,chr7:105172532-105208124:+	TUHR10TKB_KIDNEY	0.04	0.1	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000459
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4617	41	MT-CO3	1020	chrM:9226:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	1	41	1	0.99	44.2315	0.3928	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.99	1	44.6243	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	482	40	MT-ND4	1170	chrM:10929:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	49	0	0.91	1	4.6176	0.3832	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.91	1	5.0008	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	CRKL--AP3D1	335	78	CRKL	3286	chr22:21288532:+	AP3D1	13764	chr19:2138713:-	ONLY_REF_SPLICE	YES	95	25	0.81	0.94	3.2093	0.7473	{Klijn_CCL:Head-Neck=1},CRKL->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:21271714-21308037:+,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog-like,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.81	0.94	3.9566	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	155	16	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4849	0.1533	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	1.6382	FALSE	462	80	0	856	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	147	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	1.4083	0.0383	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.99	1	1.4466	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	37	319	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	57	4	0.86	0.99	0.3545	3.0561	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.86	0.99	3.4106	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	26	352	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	62	0	0.86	1	0.2491	3.3722	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.86	1	3.6213	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	386	MT-ND4	1519	chrM:11278:+	MT-ND4L	5394	chrM:10485:+	INCL_NON_REF_SPLICE	NO	820	0	0.33	1	0.1341	3.6979	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.33	1	3.832	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	11	384	MT-ND4	1724	chrM:11483:+	MT-ND4L	5482	chrM:10573:+	INCL_NON_REF_SPLICE	YES	4983	4	0.07	0.99	0.1054	3.6788	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.07	0.99	3.7842	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	96	44	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	917	0	0.13	1	0.9197	0.4215	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.13	1	1.3412	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	19	351	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	57	0	0.87	1	0.182	3.3626	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.87	1	3.5446	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	19	339	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	38	2	0.9	0.99	0.182	3.2477	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.9	0.99	3.4297	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	11	366	MT-ND4	1285	chrM:11044:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	79	0	0.83	1	0.1054	3.5063	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.83	1	3.6117	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	49	214	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	8065	3	0.03	0.99	0.4694	2.0501	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.03	0.99	2.5195	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	394	MT-ND4	2281	chrM:12040:+	MT-ND4L	5383	chrM:10474:+	INCL_NON_REF_SPLICE	YES	117	0	0.77	1	0.0383	3.7746	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.77	1	3.8129	FALSE	284	710	36	297	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	382	MT-ND4	1514	chrM:11273:+	MT-ND4L	5446	chrM:10537:+	INCL_NON_REF_SPLICE	YES	773	0	0.33	1	0.0383	3.6596	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.33	1	3.6979	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	379	MT-ND4	1478	chrM:11237:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	485	1	0.44	1	0.0383	3.6309	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.44	1	3.6692	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	353	MT-ND4	1209	chrM:10968:+	MT-ND4L	5470	chrM:10561:+	INCL_NON_REF_SPLICE	YES	66	0	0.85	1	0.0958	3.3818	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.85	1	3.4776	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	366	MT-ND4	1285	chrM:11044:+	MT-ND4L	5452	chrM:10543:+	INCL_NON_REF_SPLICE	YES	79	0	0.82	1	0.0479	3.5063	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.82	1	3.5542	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	322	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	27	2	0.93	0.99	0.1437	3.0848	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.93	0.99	3.2285	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	354	MT-ND4	1222	chrM:10981:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	61	0	0.85	1	0.0479	3.3914	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.85	1	3.4393	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	345	MT-ND4	1164	chrM:10923:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	44	0	0.89	1	0.0671	3.3051	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.89	1	3.3722	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	351	MT-ND4	1195	chrM:10954:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	61	1	0.85	1	0.0479	3.3626	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.85	1	3.4105	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	311	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	35	4	0.9	0.99	0.1437	2.9794	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.9	0.99	3.1231	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	338	MT-ND4	1170	chrM:10929:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	YES	49	4	0.88	0.99	0.0766	3.2381	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.88	0.99	3.3147	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	358	MT-ND4	1285	chrM:11044:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	79	4	0.82	0.99	0.0287	3.4297	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.82	0.99	3.4584	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	348	MT-ND4	1180	chrM:10939:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	51	0	0.87	1	0.0479	3.3339	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.87	1	3.3818	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	355	MT-ND4	1196	chrM:10955:+	MT-ND4L	5431	chrM:10522:+	INCL_NON_REF_SPLICE	YES	62	0	0.85	1	0.0287	3.4009	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.85	1	3.4296	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	338	MT-ND4	1180	chrM:10939:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	51	3	0.87	0.99	0.0671	3.2381	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.87	0.99	3.3052	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	343	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	60	3	0.85	0.99	0.0479	3.286	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.85	0.99	3.3339	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	345	MT-ND4	1213	chrM:10972:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	YES	68	4	0.84	0.99	0.0383	3.3051	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.84	0.99	3.3434	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	335	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	36	2	0.9	0.99	0.0575	3.2093	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.9	0.99	3.2668	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	334	MT-ND4	1184	chrM:10943:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	53	4	0.87	0.99	0.0575	3.1998	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.87	0.99	3.2573	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	324	MT-ND4	1164	chrM:10923:+	MT-ND4L	5529	chrM:10620:+	INCL_NON_REF_SPLICE	YES	44	4	0.88	0.99	0.0766	3.104	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.88	0.99	3.1806	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	30	236	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	21	4	0.93	0.99	0.2874	2.2609	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.93	0.99	2.5483	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	338	MT-ND4	1159	chrM:10918:+	MT-ND4L	5503	chrM:10594:+	INCL_NON_REF_SPLICE	YES	44	2	0.89	0.99	0.0383	3.2381	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.89	0.99	3.2764	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	337	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	51	3	0.87	0.99	0.0383	3.2285	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.87	0.99	3.2668	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	337	MT-ND4	1334	chrM:11093:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	123	4	0.73	0.99	0.0383	3.2285	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.73	0.99	3.2668	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	331	MT-ND4	1114	chrM:10873:+	MT-ND4L	5466	chrM:10557:+	INCL_NON_REF_SPLICE	YES	27	0	0.93	1	0.0479	3.171	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.93	1	3.2189	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	326	MT-ND4	1122	chrM:10881:+	MT-ND4L	5515	chrM:10606:+	INCL_NON_REF_SPLICE	YES	30	4	0.92	0.99	0.0575	3.1231	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.92	0.99	3.1806	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	336	MT-ND4	1155	chrM:10914:+	MT-ND4L	5512	chrM:10603:+	INCL_NON_REF_SPLICE	NO	41	4	0.89	0.99	0.0287	3.2189	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.89	0.99	3.2476	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	323	MT-ND4	1114	chrM:10873:+	MT-ND4L	5509	chrM:10600:+	INCL_NON_REF_SPLICE	YES	27	5	0.92	0.99	0.0575	3.0944	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.92	0.99	3.1519	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	330	MT-ND4	1112	chrM:10871:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	26	0	0.93	1	0.0383	3.1614	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.93	1	3.1997	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	322	MT-ND4	1216	chrM:10975:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	62	4	0.84	0.99	0.0383	3.0848	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.84	0.99	3.1231	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	298	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	26	4	0.92	0.99	0.0862	2.8549	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.92	0.99	2.9411	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	317	MT-ND4	1110	chrM:10869:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	27	3	0.92	0.99	0.0383	3.0369	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.92	0.99	3.0752	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	270	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	22	4	0.93	0.99	0.1437	2.5866	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.93	0.99	2.7303	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	318	MT-ND4	1108	chrM:10867:+	MT-ND4L	5519	chrM:10610:+	INCL_NON_REF_SPLICE	YES	26	3	0.93	0.99	0.0287	3.0465	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.93	0.99	3.0752	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	309	MT-ND4	1148	chrM:10907:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	YES	37	3	0.89	0.99	0.0383	2.9603	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.89	0.99	2.9986	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	295	MT-ND4	1093	chrM:10852:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	23	3	0.93	0.99	0.0575	2.8261	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.93	0.99	2.8836	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	289	MT-ND4	1100	chrM:10859:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	YES	25	3	0.92	0.99	0.0383	2.7687	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.92	0.99	2.807	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	268	MT-ND4	1092	chrM:10851:+	MT-ND4L	5537	chrM:10628:+	INCL_NON_REF_SPLICE	NO	23	4	0.92	0.99	0.0479	2.5675	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.92	0.99	2.6154	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	268	MT-ND4	1081	chrM:10840:+	MT-ND4L	5526	chrM:10617:+	INCL_NON_REF_SPLICE	YES	20	4	0.93	0.99	0.0287	2.5675	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.93	0.99	2.5962	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	65	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6227	0.1629	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.7856	TRUE	508	994	45	981	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	69	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.661	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.661	FALSE	462	80	0	856	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	262	MT-ND4	1079	chrM:10838:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	NO	20	4	0.93	0.99	0.0287	2.51	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.93	0.99	2.5387	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	17	194	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	26	3	0.89	0.99	0.1629	1.8585	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.89	0.99	2.0214	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	16	195	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	66	3	0.76	0.99	0.1533	1.8681	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.76	0.99	2.0214	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	229	MT-ND4	1285	chrM:11044:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	79	3	0.75	0.99	0.0671	2.1939	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.75	0.99	2.261	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	52	49	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4982	0.4694	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.9676	FALSE	369	2501	205	193	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	244	MT-ND4	1984	chrM:11743:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	19817	3	0.01	0.99	0.0287	2.3376	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.01	0.99	2.3663	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	29	140	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2778	1.3412	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	1.619	FALSE	369	2501	205	193	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	225	MT-ND4	1475	chrM:11234:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	462	3	0.33	0.99	0.0479	2.1555	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.33	0.99	2.2034	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	187	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	97	2	0.67	0.99	0.1341	1.7915	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.67	0.99	1.9256	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	60	3	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5748	0.0287	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.6035	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	51	35	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	57	0	0.6	1	0.4886	0.3353	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.6	1	0.8239	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	205	MT-ND4	1178	chrM:10937:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	50	3	0.81	0.99	0.0766	1.9639	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.81	0.99	2.0405	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	222	MT-ND4	1300	chrM:11059:+	MT-ND4L	5604	chrM:10695:+	INCL_NON_REF_SPLICE	YES	87	3	0.72	0.99	0.0287	2.1268	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.72	0.99	2.1555	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	212	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	83	3	0.72	0.99	0.0479	2.031	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.72	0.99	2.0789	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	168	MT-ND4	1503	chrM:11262:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	647	2	0.22	0.99	0.1437	1.6095	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.22	0.99	1.7532	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	192	MT-ND4	1164	chrM:10923:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	44	3	0.82	0.99	0.0862	1.8394	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.82	0.99	1.9256	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	55	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.5269	0.0766	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.98	1	0.6035	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	187	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	85	2	0.7	0.99	0.0958	1.7915	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.7	0.99	1.8873	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	RAC1--MRPS7	54	11	RAC1	4962	chr7:6431672:+	MRPS7	14569	chr17:73258578:+	ONLY_REF_SPLICE	YES	607	334	0.1	0.16	0.5173	0.1054	{Klijn_CCL:Head-Neck=1},RAC1->ArcherDX_panel,FoundationOne_panel,chr7:6414154-6443608:+,ras-related_C3_botulinum_toxin_substrate_1_(rho_family,_small_GTP_binding_protein_Rac1),MRPS7->chr17:73257755-73262454:+,mitochondrial_ribosomal_protein_S7	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.1	0.16	0.6227	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	196	MT-ND4	1298	chrM:11057:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	85	2	0.7	0.99	0.0575	1.8777	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.7	0.99	1.9352	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	24	123	MT-CO3	1220	chrM:9426:+	MT-ATP6	5176	chrM:8918:+	INCL_NON_REF_SPLICE	YES	17	135	0.9	0.52	0.2299	1.1784	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.52	0.9	1.4083	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	207	MT-ND4	1062	chrM:10821:+	MT-ND4L	5516	chrM:10607:+	INCL_NON_REF_SPLICE	YES	19	4	0.92	0.98	0.0287	1.9831	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.92	0.98	2.0118	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	206	MT-ND4	1190	chrM:10949:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	56	3	0.79	0.99	0.0287	1.9735	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.79	0.99	2.0022	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	192	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	27	3	0.88	0.99	0.0575	1.8394	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.88	0.99	1.8969	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	51	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4886	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.4886	FALSE	369	2501	205	193	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	CCDC93--AC010982.1	46	15	CCDC93	22249	chr2:118696605:-	AC010982.1	36250	chr2:114764596:+	ONLY_REF_SPLICE	YES	15	0	0.8	1	0.4407	0.1437	CCDC93->chr2:118673054-118771709:-,coiled-coil_domain_containing_93,AC010982.1->chr2:114737146-114764879:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.5844	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	162	MT-ND4	1220	chrM:10979:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	60	2	0.74	0.99	0.0862	1.552	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.74	0.99	1.6382	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	45	18	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4311	0.1724	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.6035	FALSE	462	80	0	856	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	136	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	44	1	0.77	0.99	0.1437	1.3029	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.77	0.99	1.4466	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	174	MT-ND4	1131	chrM:10890:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	32	2	0.85	0.99	0.0479	1.6669	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.85	0.99	1.7148	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	33	53	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3161	0.5077	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.8238	FALSE	369	2501	205	193	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	29	68	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	16622	0	0.01	1	0.2778	0.6514	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.9292	FALSE	328	800	43	304	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	163	MT-ND4	1170	chrM:10929:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	49	2	0.77	0.99	0.0479	1.5616	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.77	0.99	1.6095	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	135	MT-ND4	1144	chrM:10903:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	35	1	0.81	0.99	0.115	1.2933	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.81	0.99	1.4083	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	7	152	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	17	0	0.9	1	0.0671	1.4562	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.9	1	1.5233	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	16	113	MT-CO3	1666	chrM:9872:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	0	26	1	0.83	0.1533	1.0826	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.83	1	1.2359	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	164	MT-TA	1062	chrM:5594:-	MT-TN	4073	chrM:5726:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	1.5711	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	1.5998	FALSE	369	2501	205	193	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	10	134	MT-CO3	1642	chrM:9848:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	0	62	1	0.7	0.0958	1.2837	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.7	1	1.3795	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	157	MT-CO3	1459	chrM:9665:+	MT-ATP6	4899	chrM:8641:+	INCL_NON_REF_SPLICE	YES	16	9	0.91	0.95	0.0383	1.5041	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.91	0.95	1.5424	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	131	MT-ND4	1144	chrM:10903:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	35	1	0.8	0.99	0.0958	1.255	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.8	0.99	1.3508	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	149	MT-ND4	1756	chrM:11515:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	6424	1	0.02	0.99	0.0479	1.4274	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.02	0.99	1.4753	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	149	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	34	2	0.82	0.99	0.0479	1.4274	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.82	0.99	1.4753	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	9	130	MT-CO3	1220	chrM:9426:+	MT-ATP6	5072	chrM:8814:+	INCL_NON_REF_SPLICE	YES	17	73	0.89	0.66	0.0862	1.2454	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.66	0.89	1.3316	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	37	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	7	0	0.88	1	0.3545	0.1533	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.5078	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	9	126	MT-CO3	1138	chrM:9344:+	MT-ATP6	4905	chrM:8647:+	INCL_NON_REF_SPLICE	YES	16	15	0.89	0.9	0.0862	1.2071	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.89	0.9	1.2933	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	10	122	MT-CO3	1205	chrM:9411:+	MT-ATP6	5179	chrM:8921:+	INCL_NON_REF_SPLICE	YES	25	132	0.84	0.5	0.0958	1.1688	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.5	0.84	1.2646	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	134	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	67	1	0.68	0.99	0.0671	1.2837	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.68	0.99	1.3508	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	129	MT-ND4	1231	chrM:10990:+	MT-ND4L	5632	chrM:10723:+	INCL_NON_REF_SPLICE	YES	61	1	0.69	0.99	0.0766	1.2358	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.69	0.99	1.3124	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	149	MT-ND4	1578	chrM:11337:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	1364	1	0.1	0.99	0.0287	1.4274	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.1	0.99	1.4561	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	29	43	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	17	2	0.81	0.97	0.2778	0.4119	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.81	0.97	0.6897	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	28	44	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	11132	0	0.01	1	0.2682	0.4215	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.6897	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	22	67	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	820	0	0.1	1	0.2108	0.6419	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.1	1	0.8527	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	28	41	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	62	0	0.53	1	0.2682	0.3928	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.53	1	0.661	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	28	41	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	66	0	0.51	1	0.2682	0.3928	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.51	1	0.661	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	92	MT-ND4	1773	chrM:11532:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	YES	7425	0	0.01	1	0.1437	0.8814	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.01	1	1.0251	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	16	87	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1533	0.8335	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.9868	FALSE	369	2501	205	193	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	136	MT-CO3	1156	chrM:9362:+	MT-ATP6	4737	chrM:8479:+	INCL_NON_REF_SPLICE	YES	21	0	0.87	1	0.0287	1.3029	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.87	1	1.3316	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	17	80	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	24	0.99	0.8	0.1629	0.7664	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.8	0.99	0.9293	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	37	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3545	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.3545	FALSE	369	2501	205	193	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	10	107	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	25	23	0.82	0.84	0.0958	1.0251	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.82	0.84	1.1209	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	84	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	21	2	0.82	0.98	0.1437	0.8047	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.82	0.98	0.9484	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	36	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3449	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.3449	FALSE	369	2501	205	193	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	8	111	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	25	26	0.83	0.82	0.0766	1.0634	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.82	0.83	1.14	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	11	98	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	3	92	0.97	0.54	0.1054	0.9389	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.54	0.97	1.0443	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	35	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3353	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.3353	FALSE	369	2501	205	193	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	26	33	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	7	0	0.89	1	0.2491	0.3161	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.89	1	0.5652	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	7	107	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	16	111	0.88	0.51	0.0671	1.0251	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.51	0.88	1.0922	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	25	34	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	16	6	0.79	0.91	0.2395	0.3257	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.79	0.91	0.5652	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	122	MT-CO3	1256	chrM:9462:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	13	111	0.91	0.53	0.0287	1.1688	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.53	0.91	1.1975	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	5	114	MT-CO3	1113	chrM:9319:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	6	1	0.95	0.99	0.0479	1.0921	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.95	0.99	1.14	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	78	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	5	2	0.95	0.98	0.1341	0.7473	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.95	0.98	0.8814	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	106	MT-ND4	1779	chrM:11538:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	7879	1	0.01	0.99	0.0671	1.0155	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.01	0.99	1.0826	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	97	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	6	1	0.95	0.99	0.0862	0.9293	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.95	0.99	1.0155	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	8	100	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	17	26	0.86	0.81	0.0766	0.958	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.81	0.86	1.0346	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	13	79	MT-TA	1054	chrM:5602:-	MT-TN	4092	chrM:5707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1245	0.7568	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.8813	FALSE	369	2501	205	193	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	5	109	MT-CO3	1153	chrM:9359:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	21	43	0.84	0.73	0.0479	1.0442	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.73	0.84	1.0921	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	5	109	MT-CO3	1220	chrM:9426:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	17	24	0.87	0.83	0.0479	1.0442	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.83	0.87	1.0921	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	21	44	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	932	0	0.07	1	0.2012	0.4215	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.6227	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	8	95	MT-CO3	1083	chrM:9289:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	3	62	0.97	0.62	0.0766	0.9101	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.62	0.97	0.9867	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	79	MT-ND4	1216	chrM:10975:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	YES	62	0	0.59	1	0.115	0.7568	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.59	1	0.8718	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	110	MT-CO3	1220	chrM:9426:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	17	26	0.87	0.81	0.0383	1.0538	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.81	0.87	1.0921	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	5	106	MT-CO3	1138	chrM:9344:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	16	43	0.87	0.72	0.0479	1.0155	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.72	0.87	1.0634	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	114	MT-CO3	1126	chrM:9332:+	MT-ATP6	4966	chrM:8708:+	INCL_NON_REF_SPLICE	YES	13	45	0.9	0.72	0.0287	1.0921	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.72	0.9	1.1208	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	7	97	MT-CO3	1083	chrM:9289:+	MT-ATP6	4916	chrM:8658:+	INCL_NON_REF_SPLICE	YES	3	30	0.97	0.78	0.0671	0.9293	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.78	0.97	0.9964	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	113	MT-CO3	1525	chrM:9731:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	17	26	0.87	0.82	0.0287	1.0826	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.82	0.87	1.1113	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	31	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.297	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.297	TRUE	519	3926	326	965	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	111	MT-CO3	1141	chrM:9347:+	MT-ATP6	5166	chrM:8908:+	INCL_NON_REF_SPLICE	YES	17	123	0.87	0.48	0.0287	1.0634	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.48	0.87	1.0921	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	107	MT-CO3	1220	chrM:9426:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	17	23	0.87	0.83	0.0383	1.0251	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.83	0.87	1.0634	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	110	MT-CO3	1144	chrM:9350:+	MT-ATP6	5183	chrM:8925:+	INCL_NON_REF_SPLICE	YES	18	129	0.86	0.47	0.0287	1.0538	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.47	0.86	1.0825	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	6	98	MT-CO3	1155	chrM:9361:+	MT-ATP6	5330	chrM:9072:+	INCL_NON_REF_SPLICE	YES	21	18	0.83	0.85	0.0575	0.9389	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.83	0.85	0.9964	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	109	MT-CO3	1123	chrM:9329:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	11	62	0.91	0.64	0.0287	1.0442	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.64	0.91	1.0729	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	8	87	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	3	23	0.97	0.81	0.0766	0.8335	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.81	0.97	0.9101	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	58	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	51	0	0.59	1	0.1437	0.5556	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.59	1	0.6993	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	29	1	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	1	4	0.97	0.88	0.2778	0.0096	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.88	0.97	0.2874	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	105	MT-ND4	1519	chrM:11278:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	YES	820	1	0.12	0.99	0.0287	1.0059	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.12	0.99	1.0346	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	100	MT-CO3	1105	chrM:9311:+	MT-ATP6	5182	chrM:8924:+	INCL_NON_REF_SPLICE	YES	3	129	0.97	0.45	0.0383	0.958	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.45	0.97	0.9963	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	5	96	MT-CO3	1126	chrM:9332:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	13	24	0.89	0.81	0.0479	0.9197	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.81	0.89	0.9676	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	5	96	MT-CO3	1089	chrM:9295:+	MT-ATP6	5156	chrM:8898:+	INCL_NON_REF_SPLICE	YES	3	128	0.97	0.44	0.0479	0.9197	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.44	0.97	0.9676	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	100	MT-ND4	1112	chrM:10871:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	26	1	0.8	0.99	0.0383	0.958	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.8	0.99	0.9963	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	6	91	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	3	17	0.97	0.85	0.0575	0.8718	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.85	0.97	0.9293	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	102	MT-CO3	1111	chrM:9317:+	MT-ATP6	5188	chrM:8930:+	INCL_NON_REF_SPLICE	YES	5	131	0.95	0.44	0.0287	0.9772	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.44	0.95	1.0059	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	7	85	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	NO	1	41	0.99	0.69	0.0671	0.8143	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.69	0.99	0.8814	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	100	MT-CO3	1159	chrM:9365:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	22	21	0.82	0.83	0.0287	0.958	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.82	0.83	0.9867	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	10	72	MT-TC	1061	chrM:5766:-	MT-TY	4075	chrM:5883:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0958	0.6898	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.7856	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	95	MT-CO3	1087	chrM:9293:+	MT-ATP6	5154	chrM:8896:+	INCL_NON_REF_SPLICE	YES	3	131	0.97	0.43	0.0383	0.9101	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.43	0.97	0.9484	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	97	MT-CO3	1158	chrM:9364:+	MT-ATP6	5357	chrM:9099:+	INCL_NON_REF_SPLICE	YES	21	11	0.83	0.9	0.0287	0.9293	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.83	0.9	0.958	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	60	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	61	0	0.54	1	0.115	0.5748	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.54	1	0.6898	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	95	MT-CO3	1136	chrM:9342:+	MT-ATP6	5323	chrM:9065:+	INCL_NON_REF_SPLICE	YES	16	21	0.86	0.82	0.0287	0.9101	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.82	0.86	0.9388	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	66	MT-ND4	1471	chrM:11230:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	431	0	0.15	1	0.0958	0.6323	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.15	1	0.7281	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	92	MT-ND4	1519	chrM:11278:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	NO	820	0	0.1	1	0.0287	0.8814	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.1	1	0.9101	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	91	MT-ND4	1073	chrM:10832:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	21	2	0.82	0.98	0.0287	0.8718	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.82	0.98	0.9005	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	43	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	484	0	0.11	1	0.1437	0.4119	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.5556	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	5	80	MT-TC	1065	chrM:5762:-	MT-TY	4067	chrM:5891:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0.7664	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.8143	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	87	MT-CO3	1075	chrM:9281:+	MT-ATP6	5166	chrM:8908:+	INCL_NON_REF_SPLICE	YES	1	123	0.99	0.42	0.0287	0.8335	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.42	0.99	0.8622	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	9	62	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0.594	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.6802	FALSE	369	2501	205	193	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	73	MT-ND4	1125	chrM:10884:+	MT-ND4L	5651	chrM:10742:+	INCL_NON_REF_SPLICE	YES	32	0	0.71	1	0.0575	0.6993	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.71	1	0.7568	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	84	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	23	1	0.79	0.99	0.0287	0.8047	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.79	0.99	0.8334	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	63	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	74	0	0.49	1	0.0766	0.6035	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.49	1	0.6801	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	45	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	18342	0	0	1	0.115	0.4311	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0	1	0.5461	FALSE	343	822	44	305	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	77	MT-ND4	1180	chrM:10939:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	NO	51	0	0.61	1	0.0383	0.7377	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.61	1	0.776	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	15	33	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	7	0	0.87	1	0.1437	0.3161	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.87	1	0.4598	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	3	80	MT-TC	1064	chrM:5763:-	MT-TY	4066	chrM:5892:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0287	0.7664	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.7951	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	43	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	79	0	0.41	1	0.115	0.4119	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.41	1	0.5269	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	18	19	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	61	0	0.38	1	0.1724	0.182	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.38	1	0.3544	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	22	1	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2108	0.0096	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.2204	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	77	MT-CO3	1072	chrM:9278:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	26	0.99	0.75	0.0287	0.7377	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.75	0.99	0.7664	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	3	76	MT-TC	1059	chrM:5768:-	MT-TY	4059	chrM:5899:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.7281	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.7568	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TL1--MT-RNR2	22	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2108	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.2108	FALSE	7	521	16	32	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	18	13	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	16	2	0.66	0.94	0.1724	0.1245	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.66	0.94	0.2969	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	20	5	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	20	2	0.56	0.93	0.1916	0.0479	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.56	0.93	0.2395	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	16	20	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	81	0	0.31	1	0.1533	0.1916	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.31	1	0.3449	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	71	MT-CO3	1063	chrM:9269:+	MT-ATP6	5185	chrM:8927:+	INCL_NON_REF_SPLICE	YES	2	128	0.97	0.37	0.0287	0.6802	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.37	0.97	0.7089	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	67	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	7425	0	0.01	1	0.0383	0.6419	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.6802	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	6	58	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	NO	3	10	0.96	0.86	0.0575	0.5556	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.86	0.96	0.6131	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	11	38	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	1	11	0.98	0.82	0.1054	0.364	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.82	0.98	0.4694	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	58	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	44	0	0.59	1	0.0575	0.5556	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.59	1	0.6131	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	13	28	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.1245	0.2682	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.98	1	0.3927	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	20	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1916	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.1916	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	67	MT-CO3	1063	chrM:9269:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	26	0.97	0.73	0.0287	0.6419	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.73	0.97	0.6706	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	14	20	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	16	3	0.68	0.92	0.1341	0.1916	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.68	0.92	0.3257	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	60	MT-CO3	1051	chrM:9257:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	2	24	0.97	0.73	0.0383	0.5748	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.73	0.97	0.6131	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	60	MT-ND4	1209	chrM:10968:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	66	0	0.49	1	0.0383	0.5748	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.49	1	0.6131	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	6	51	MT-CO3	1039	chrM:9245:+	MT-ATP6	5321	chrM:9063:+	INCL_NON_REF_SPLICE	YES	2	22	0.97	0.72	0.0575	0.4886	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.72	0.97	0.5461	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	42	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	23	0	0.68	1	0.0766	0.4024	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.68	1	0.479	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	61	MT-CO3	1061	chrM:9267:+	MT-ATP6	5343	chrM:9085:+	INCL_NON_REF_SPLICE	YES	2	16	0.97	0.8	0.0287	0.5844	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.8	0.97	0.6131	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	41	MT-ND4	1192	chrM:10951:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	57	0	0.46	1	0.0766	0.3928	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.46	1	0.4694	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	60	MT-CO3	1047	chrM:9253:+	MT-ATP6	5265	chrM:9007:+	INCL_NON_REF_SPLICE	YES	2	28	0.97	0.69	0.0287	0.5748	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.69	0.97	0.6035	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	55	MT-CO3	1039	chrM:9245:+	MT-ATP6	5159	chrM:8901:+	INCL_NON_REF_SPLICE	YES	2	128	0.97	0.32	0.0383	0.5269	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.32	0.97	0.5652	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TL1--MT-RNR2	5	51	MT-TL1	1092	chrM:3321:+	MT-RNR2	4806	chrM:2401:+	INCL_NON_REF_SPLICE	YES	0	9994	1	0.01	0.0479	0.4886	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.5365	FALSE	7	521	16	32	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	54	MT-CO3	1038	chrM:9244:+	MT-ATP6	5188	chrM:8930:+	INCL_NON_REF_SPLICE	YES	2	131	0.97	0.31	0.0383	0.5173	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.31	0.97	0.5556	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	42	MT-ND4	1248	chrM:11007:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	64	0	0.43	1	0.0671	0.4024	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.43	1	0.4695	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	50	MT-ND6	1302	chrM:14372:-	MT-TE	4520	chrM:14748:-	INCL_NON_REF_SPLICE	YES	4	0	0.93	1	0.0479	0.479	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.93	1	0.5269	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	40	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	35	0	0.57	1	0.0671	0.3832	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.57	1	0.4503	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	56	MT-ND4	1131	chrM:10890:+	MT-ND4L	5657	chrM:10748:+	INCL_NON_REF_SPLICE	YES	32	0	0.65	1	0.0287	0.5365	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.65	1	0.5652	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	40	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	44	0	0.52	1	0.0671	0.3832	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.52	1	0.4503	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	17	0	MT-TC	1009	chrM:5818:-	MT-TY	4068	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1629	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.1629	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	55	MT-CO3	1039	chrM:9245:+	MT-ATP6	5090	chrM:8832:+	INCL_NON_REF_SPLICE	YES	2	91	0.97	0.39	0.0287	0.5269	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.39	0.97	0.5556	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	6	43	MT-CO3	1023	chrM:9229:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	1	41	0.98	0.54	0.0575	0.4119	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.54	0.98	0.4694	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	50	MT-CO3	1036	chrM:9242:+	MT-ATP6	5156	chrM:8898:+	INCL_NON_REF_SPLICE	YES	1	128	0.98	0.3	0.0383	0.479	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.3	0.98	0.5173	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	53	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.5077	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.5364	FALSE	369	2501	205	193	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	6	40	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	1	24	0.98	0.66	0.0575	0.3832	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.66	0.98	0.4407	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	16	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1533	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.1533	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	48	MT-CO3	1033	chrM:9239:+	MT-ATP6	4768	chrM:8510:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0383	0.4598	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.98	1	0.4981	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	16	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1533	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.1533	TRUE	0	0	0	434	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	11	19	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	67	0	0.31	1	0.1054	0.182	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.31	1	0.2874	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	5	41	MT-CO3	1126	chrM:9332:+	MT-ATP6	5405	chrM:9147:+	INCL_NON_REF_SPLICE	YES	13	6	0.78	0.88	0.0479	0.3928	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.78	0.88	0.4407	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	5	41	MT-CO3	1020	chrM:9226:+	MT-ATP6	5206	chrM:8948:+	INCL_NON_REF_SPLICE	YES	1	113	0.98	0.29	0.0479	0.3928	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.29	0.98	0.4407	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	9	25	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0.2395	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.3257	FALSE	462	80	0	856	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	3	49	MT-TC	1102	chrM:5725:-	MT-TY	4082	chrM:5876:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.4694	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.4981	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	15	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1437	0.0096	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.1533	FALSE	416	2512	207	587	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	15	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1437	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.1437	FALSE	351	233	23	137	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	47	MT-ND4	1016	chrM:10775:+	MT-ND4L	5463	chrM:10554:+	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.0287	0.4503	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.94	1	0.479	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	39	MT-ND4	1114	chrM:10873:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	27	0	0.62	1	0.0479	0.3736	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.62	1	0.4215	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	18	MT-ND4	1004	chrM:10763:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0958	0.1724	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.93	1	0.2682	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	42	MT-ND6	1315	chrM:14359:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.0383	0.4024	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.92	1	0.4407	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	40	MT-ND4	1152	chrM:10911:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	38	0	0.54	1	0.0383	0.3832	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.54	1	0.4215	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	40	MT-ND4	1278	chrM:11037:+	MT-ND4L	5663	chrM:10754:+	INCL_NON_REF_SPLICE	YES	73	0	0.38	1	0.0383	0.3832	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.38	1	0.4215	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	11	12	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1054	0.115	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.2204	FALSE	462	80	0	856	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	39	MT-CO3	1021	chrM:9227:+	MT-ATP6	5326	chrM:9068:+	INCL_NON_REF_SPLICE	YES	1	21	0.98	0.67	0.0383	0.3736	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.67	0.98	0.4119	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	8	23	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.0766	0.2203	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.89	1	0.2969	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-TL1	12	6	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.115	0.0575	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.1725	FALSE	210	95	5	49	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	41	MT-CO3	1020	chrM:9226:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	1	43	0.98	0.51	0.0287	0.3928	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.51	0.98	0.4215	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	6	29	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	3	5	0.92	0.88	0.0575	0.2778	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.88	0.92	0.3353	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	5	32	MT-CO3	1123	chrM:9329:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	YES	11	5	0.77	0.88	0.0479	0.3066	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.77	0.88	0.3545	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	20	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	23	0	0.55	1	0.0766	0.1916	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.55	1	0.2682	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	20	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	81	0	0.26	1	0.0766	0.1916	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.26	1	0.2682	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	40	MT-ND4	1180	chrM:10939:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	51	0	0.46	1	0.0287	0.3832	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.46	1	0.4119	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	8	20	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0766	0.1916	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.9	1	0.2682	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	39	MT-CO3	1205	chrM:9411:+	MT-ATP6	5416	chrM:9158:+	INCL_NON_REF_SPLICE	YES	25	6	0.63	0.88	0.0287	0.3736	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.63	0.88	0.4023	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	19	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	61	0	0.31	1	0.0766	0.182	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.31	1	0.2586	FALSE	344	827	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MTND4P12--MT-CO1	11	7	MTND4P12	1773	chr5:134262954:-	MT-CO1	5915	chrM:6441:+	INCL_NON_REF_SPLICE	YES	31	10394	0.37	0	0.1054	0.0671	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0	0.37	0.1725	FALSE	10	0	0	6	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	34	MT-CO3	1092	chrM:9298:+	MT-ATP6	5414	chrM:9156:+	INCL_NON_REF_SPLICE	YES	3	6	0.93	0.86	0.0383	0.3257	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.86	0.93	0.364	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	8	16	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	6	0	0.8	1	0.0766	0.1533	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.2299	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	12	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.115	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.115	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	5	27	MT-CO3	1149	chrM:9355:+	MT-ATP6	5426	chrM:9168:+	INCL_NON_REF_SPLICE	YES	20	5	0.62	0.86	0.0479	0.2587	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.62	0.86	0.3066	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	34	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	3	6	0.93	0.86	0.0287	0.3257	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.86	0.93	0.3544	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	33	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.0287	0.3161	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.3448	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	6	20	MT-CO3	1144	chrM:9350:+	MT-ATP6	5446	chrM:9188:+	INCL_NON_REF_SPLICE	YES	18	3	0.59	0.9	0.0575	0.1916	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.59	0.9	0.2491	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-TL1	3	32	MT-ND1	1090	chrM:3396:+	MT-TL1	4984	chrM:3257:+	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.0287	0.3066	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.3353	FALSE	210	95	5	49	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	4	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	19	0	0.42	1	0.0958	0.0383	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.42	1	0.1341	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	32	MT-ND4	1008	chrM:10767:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	3	1	0.92	0.97	0.0287	0.3066	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.92	0.97	0.3353	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	11	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1054	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.1054	FALSE	369	2501	205	193	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	KIAA0247--RAD51B	10	3	KIAA0247	3670	chr14:70125430:+	RAD51B	31283	chr14:68758601:+	ONLY_REF_SPLICE	YES	23	8	0.36	0.62	0.0958	0.0287	KIAA0247->chr14:70078313-70181859:+,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.36	0.62	0.1245	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	7	15	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	26	2	0.46	0.92	0.0671	0.1437	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.46	0.92	0.2108	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	27	MT-ND6	1084	chrM:14590:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0383	0.2587	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.97	1	0.297	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TL1--MT-RNR2	9	7	MT-TL1	1104	chrM:3333:+	MT-RNR2	5603	chrM:3198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0.0671	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.1533	FALSE	7	521	16	32	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	CDCA5--KMT2C	9	6	CDCA5	1801	chr11:64850836:-	KMT2C	19007	chr7:151970952:-	ONLY_REF_SPLICE	YES	238	4	0.06	0.79	0.0862	0.0575	CDCA5->cell_division_cycle_associated_5,chr11:64833772-64851636:-,KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.06	0.79	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	7	14	MT-TC	1065	chrM:5762:-	MT-TY	4101	chrM:5857:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0.1341	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.2012	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-TL1	6	17	MT-ND1	1342	chrM:3648:+	MT-TL1	5013	chrM:3286:+	INCL_NON_REF_SPLICE	YES	63	0	0.27	1	0.0575	0.1629	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.27	1	0.2204	FALSE	210	95	5	49	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	25	MT-ND4	1093	chrM:10852:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	23	0	0.56	1	0.0383	0.2395	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.56	1	0.2778	FALSE	344	826	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	9	5	MT-TC	1104	chrM:5723:-	MT-TY	4105	chrM:5853:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0.0479	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.1341	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	5	20	MT-CO3	1162	chrM:9368:+	MT-ATP6	5445	chrM:9187:+	INCL_NON_REF_SPLICE	YES	22	3	0.53	0.89	0.0479	0.1916	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.53	0.89	0.2395	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	24	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	3	5	0.9	0.85	0.0383	0.2299	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.85	0.9	0.2682	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	10	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0958	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0958	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	10	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0958	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0958	FALSE	369	2501	205	193	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	9	3	MT-CO3	1158	chrM:9364:+	MT-ATP6	5461	chrM:9203:+	INCL_NON_REF_SPLICE	NO	21	0	0.36	1	0.0862	0.0287	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.36	1	0.1149	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	8	6	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	26	1	0.35	0.93	0.0766	0.0575	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.35	0.93	0.1341	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	2	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	10	0	0.52	1	0.0862	0.0192	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.52	1	0.1054	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	22	MT-ND6	1126	chrM:14548:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	4	0	0.87	1	0.0383	0.2108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.87	1	0.2491	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	9	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0862	0.0096	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.83	1	0.0958	FALSE	292	1546	117	613	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	24	MT-CO3	1299	chrM:9505:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	11	3	0.71	0.9	0.0287	0.2299	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.71	0.9	0.2586	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	7	8	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	3	0	0.83	1	0.0671	0.0766	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.83	1	0.1437	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	RP11-114H23.1--RP11-114H23.2	8	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0766	0.0287	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.1053	FALSE	81	155	12	160	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	5	14	MT-CO3	1004	chrM:9210:+	MT-ATP6	5161	chrM:8903:+	INCL_NON_REF_SPLICE	YES	0	123	1	0.13	0.0479	0.1341	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.13	1	0.182	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	5	13	MT-CO3	1132	chrM:9338:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	15	2	0.55	0.9	0.0479	0.1245	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.55	0.9	0.1724	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-TL1	8	1	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.0766	0.0096	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.64	1	0.0862	FALSE	210	95	5	49	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	21	MT-ND6	1096	chrM:14578:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0287	0.2012	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.92	1	0.2299	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	17	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0.1629	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.2012	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	RAC1--MRPS7	8	1	RAC1	4962	chr7:6431672:+	MRPS7	17563	chr17:73261783:+	ONLY_REF_SPLICE	YES	607	395	0.01	0.02	0.0766	0.0096	{Klijn_CCL:Head-Neck=1},RAC1->ArcherDX_panel,FoundationOne_panel,chr7:6414154-6443608:+,ras-related_C3_botulinum_toxin_substrate_1_(rho_family,_small_GTP_binding_protein_Rac1),MRPS7->chr17:73257755-73262454:+,mitochondrial_ribosomal_protein_S7	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.0862	FALSE	0	0	0	1	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	7	4	MT-CO3	1063	chrM:9269:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	2	3	0.85	0.79	0.0671	0.0383	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.79	0.85	0.1054	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	8	0	MT-TA	1067	chrM:5589:-	MT-TN	4133	chrM:5666:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0766	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0766	FALSE	369	2501	205	193	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	AC002066.1--AC073130.1	7	3	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	10	0	0.5	1	0.0671	0.0287	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.5	1	0.0958	FALSE	0	3	0	33	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	6	7	MT-CO3	1068	chrM:9274:+	MT-ATP6	5439	chrM:9181:+	INCL_NON_REF_SPLICE	YES	2	3	0.87	0.81	0.0575	0.0671	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.81	0.87	0.1246	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	15	MT-CO3	1006	chrM:9212:+	MT-ATP6	5062	chrM:8804:+	INCL_NON_REF_SPLICE	YES	0	70	1	0.21	0.0383	0.1437	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.21	1	0.182	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	7	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0575	0.0671	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.93	1	0.1246	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	6	7	MT-TC	1054	chrM:5773:-	MT-TY	4095	chrM:5863:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0575	0.0671	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.1246	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	7	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0671	0.0287	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.91	1	0.0958	FALSE	515	4851	409	746	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	KIAA0247--RAD51B	6	6	KIAA0247	4868	chr14:70170309:+	RAD51B	31283	chr14:68758601:+	ONLY_REF_SPLICE	YES	26	8	0.32	0.6	0.0575	0.0575	KIAA0247->chr14:70078313-70181859:+,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.32	0.6	0.115	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	6	6	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	26	0	0.32	1	0.0575	0.0575	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.32	1	0.115	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	14	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	27	1	0.4	0.0383	0.1341	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.1724	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	10	MT-ND4	1031	chrM:10790:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	7	3	0.68	0.83	0.0479	0.0958	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.68	0.83	0.1437	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-TL1	5	9	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	29	0	0.33	1	0.0479	0.0862	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.33	1	0.1341	FALSE	210	95	5	49	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	7	1	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0671	0.0096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.89	1	0.0767	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	7	0	MT-CO3	1012	chrM:9218:+	MT-ATP6	5425	chrM:9167:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0671	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	16	MT-ND6	1254	chrM:14420:-	MT-TE	4573	chrM:14695:-	INCL_NON_REF_SPLICE	YES	5	0	0.79	1	0.0287	0.1533	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.79	1	0.182	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	7	0	MT-ND6	1027	chrM:14647:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0671	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	5	7	MT-CO3	1211	chrM:9417:+	MT-ATP6	5458	chrM:9200:+	INCL_NON_REF_SPLICE	YES	25	1	0.32	0.92	0.0479	0.0671	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.32	0.92	0.115	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	11	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.88	0.0383	0.1054	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.1437	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	2	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	3	2	0.73	0.8	0.0575	0.0192	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.73	0.8	0.0767	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	VEGFC--GALNTL6	6	2	VEGFC	1563	chr4:177713319:-	GALNTL6	18911	chr4:173150807:+	ONLY_REF_SPLICE	YES	43	0	0.16	1	0.0575	0.0192	{Klijn_CCL:Head-Neck=1},VEGFC->chr4:177604689-177713881:-,vascular_endothelial_growth_factor_C,GALNTL6->chr4:172733405-173962710:+,polypeptide_N-acetylgalactosaminyltransferase-like_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.16	1	0.0767	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	AC002066.1--AC073130.1	5	5	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	9	0	0.53	1	0.0479	0.0479	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.53	1	0.0958	FALSE	0	1	1	30	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	1	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0.0096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0671	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	1	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0575	0.0096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.0671	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	6	0	MT-TC	1059	chrM:5768:-	MT-TY	4111	chrM:5847:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0575	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	6	0	MT-TC	1011	chrM:5816:-	MT-TY	4049	chrM:5909:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0575	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	5	3	MT-CO3	1083	chrM:9289:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	3	1	0.73	0.89	0.0479	0.0287	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.73	0.89	0.0766	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	RAC1--MRPS7	3	11	RAC1	4962	chr7:6431672:+	MRPS7	14531	chr17:73258540:+	INCL_NON_REF_SPLICE	YES	607	353	0.02	0.04	0.0287	0.1054	{Klijn_CCL:Head-Neck=1},RAC1->ArcherDX_panel,FoundationOne_panel,chr7:6414154-6443608:+,ras-related_C3_botulinum_toxin_substrate_1_(rho_family,_small_GTP_binding_protein_Rac1),MRPS7->chr17:73257755-73262454:+,mitochondrial_ribosomal_protein_S7	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.02	0.04	0.1341	TRUE	0	0	0	1	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	CRKL--AP3D1	2	14	CRKL	3286	chr22:21288532:+	AP3D1	15387	chr19:2137090:-	ONLY_REF_SPLICE	YES	95	160	0.14	0.09	0.0192	0.1341	{Klijn_CCL:Head-Neck=1},CRKL->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:21271714-21308037:+,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog-like,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.09	0.14	0.1533	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-TL1	3	10	MT-ND1	1027	chrM:3333:+	MT-TL1	4925	chrM:3198:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0287	0.0958	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.93	1	0.1245	FALSE	210	95	5	49	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	1	MT-ND4	1033	chrM:10792:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9	0	0.4	1	0.0479	0.0096	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.0575	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MTND4P12--MT-CO1	3	9	MTND4P12	2200	chr5:134262527:-	MT-CO1	5942	chrM:6468:+	INCL_NON_REF_SPLICE	YES	1	12250	0.92	0	0.0287	0.0862	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0	0.92	0.1149	FALSE	10	0	0	6	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	5	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0479	FALSE	351	233	23	137	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	4	MT-ND4	1060	chrM:10819:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	YES	19	1	0.3	0.89	0.0383	0.0383	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.3	0.89	0.0766	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	5	0	MT-TA	1020	chrM:5636:-	MT-TN	4113	chrM:5686:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0479	FALSE	369	2501	205	193	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	5	0	MT-TC	1008	chrM:5819:-	MT-TY	4062	chrM:5896:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0479	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	RPSAP52--HMGA2	5	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0479	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0479	FALSE	0	59	0	125	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	CCDC93--AC010982.1	4	3	CCDC93	20057	chr2:118701600:-	AC010982.1	36250	chr2:114764596:+	ONLY_REF_SPLICE	YES	35	0	0.17	1	0.0383	0.0287	CCDC93->chr2:118673054-118771709:-,coiled-coil_domain_containing_93,AC010982.1->chr2:114737146-114764879:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.17	1	0.067	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	7	MT-CO3	1192	chrM:9398:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	26	1	0.28	0.91	0.0287	0.0671	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.28	0.91	0.0958	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	3	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	9	1	0.44	0.88	0.0383	0.0287	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.44	0.88	0.067	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	2	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	11	0	0.35	1	0.0383	0.0192	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.35	1	0.0575	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0383	0.0096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.83	1	0.0479	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0383	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	4	0	MT-ND3	1216	chrM:10274:+	MT-ATP8	4384	chrM:8403:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0383	FALSE	351	233	23	137	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	4	0	MT-ND3	1071	chrM:10129:+	MT-ATP8	4502	chrM:8521:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0383	FALSE	351	233	23	137	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	4	0	MT-TC	1003	chrM:5824:-	MT-TY	4007	chrM:5951:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0383	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	4	0	MT-TC	1056	chrM:5771:-	MT-TY	4108	chrM:5850:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0383	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0383	TRUE	0	0	0	434	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	3	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	4	2	0.6	0.75	0.0287	0.0287	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.6	0.75	0.0574	FALSE	344	821	44	306	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	1	MT-CO3	1051	chrM:9257:+	MT-ATP6	5429	chrM:9171:+	INCL_NON_REF_SPLICE	YES	2	5	0.67	0.44	0.0287	0.0096	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.44	0.67	0.0383	FALSE	189	492	56	216	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	3	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0.0096	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0383	FALSE	93	270	15	244	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	3	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4495	chrM:8514:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0287	FALSE	351	233	23	137	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	3	0	MT-ND3	1152	chrM:10210:+	MT-ATP8	4388	chrM:8407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0287	FALSE	351	233	23	137	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0287	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1027	chrM:14647:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0287	FALSE	499	1288	110	792	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	0	MT-TA	1072	chrM:5584:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0287	FALSE	369	2501	205	193	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	3	0	MT-TC	1066	chrM:5761:-	MT-TY	4121	chrM:5837:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0287	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	3	0	MT-TC	1075	chrM:5752:-	MT-TY	4124	chrM:5834:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0287	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	3	0	MT-TC	1013	chrM:5814:-	MT-TY	4023	chrM:5935:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0287	FALSE	51	280	19	36	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0287	TRUE	465	1949	224	605	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	TIMP2--CANT1	3	0	TIMP2	1425	chr17:76921045:-	CANT1	19382	chr17:76994045:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:-:[66330],TIMP2->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_2,chr17:76849059-76921469:-,CANT1->Oncogene{Bushman},calcium_activated_nucleotidase_1,chr17:76987799-77005949:-	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	TIMP2--CANT1	3	0	TIMP2	1429	chr17:76921041:-	CANT1	17888	chr17:76996352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:-:[66330],TIMP2->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_2,chr17:76849059-76921469:-,CANT1->Oncogene{Bushman},calcium_activated_nucleotidase_1,chr17:76987799-77005949:-	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	TXNRD1--UBC	3	0	TXNRD1	10019	chr12:104680887:+	UBC	37328	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	AC002066.1--TES	2	2	AC002066.1	2203	chr7:116122867:-	TES	13999	chr7:115874588:+	ONLY_REF_SPLICE	YES	9	524	0.31	0.01	0.0192	0.0192	NEIGHBORS_OVERLAP:-:+:[20523],AC002066.1->chr7:115878314-116139519:-,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.01	0.31	0.0384	FALSE	0	0	0	1	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	CCDC93--AC010982.1	2	2	CCDC93	18552	chr2:118703105:-	AC010982.1	36250	chr2:114764596:+	ONLY_REF_SPLICE	YES	52	0	0.07	1	0.0192	0.0192	CCDC93->chr2:118673054-118771709:-,coiled-coil_domain_containing_93,AC010982.1->chr2:114737146-114764879:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	YWHAE--NXN	2	1	YWHAE	1332	chr17:1303341:-	NXN	29487	chr17:708487:-	ONLY_REF_SPLICE	YES	3061	428	0	0.01	0.0192	0.0096	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,NXN->chr17:702553-883010:-,nucleoredoxin	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0288	FALSE	0	0	0	2	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	CAPZA2--CAV1	2	0	CAPZA2	3371	chr7:116502704:+	CAV1	28621	chr7:116199000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0192	TRUE	0	1	0	2	1	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	CAPZA2--RPL41	2	0	CAPZA2	3371	chr7:116502704:+	RPL41	25576	chr12:56510559:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,RPL41->chr12:56510370-56511727:+,ribosomal_protein_L41	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0192	TRUE	0	1	0	2	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	KMT2E--PSMC2	2	0	KMT2E	4686	chr7:104681470:+	PSMC2	39811	chr7:103002404:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,PSMC2->chr7:102984701-103009842:+,proteasome_26S_subunit,_ATPase_2	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0192	TRUE	0	1	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	TIMP2--CANT1	2	0	TIMP2	1429	chr17:76921041:-	CANT1	19382	chr17:76994045:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	LOCAL_REARRANGEMENT:-:[66330],TIMP2->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_2,chr17:76849059-76921469:-,CANT1->Oncogene{Bushman},calcium_activated_nucleotidase_1,chr17:76987799-77005949:-	DETROIT562_UPPER_AERODIGESTIVE_TRACT	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.8	1	0.0096	0.0287	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.0383	FALSE	407	2205	196	549	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	GPR126--VTA1	1	2	GPR126	2987	chr6:142630781:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	YES	64	167	0.04	0.02	0.0096	0.0192	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.02	0.04	0.0288	TRUE	0	2	0	15	1	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	3061	132	0	0.02	0.0096	0.0192	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0	0.02	0.0288	FALSE	6	50	7	115	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	ATL2--HNRNPLL	1	1	ATL2	6688	chr2:38570410:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	YES	135	152	0.01	0.01	0.0096	0.0096	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.01	0.01	0.0192	FALSE	0	5	0	8	2	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	C11orf73--PICALM	1	1	C11orf73	3558	chr11:86017524:+	PICALM	14527	chr11:85742653:-	ONLY_REF_SPLICE	YES	232	281	0.01	0.01	0.0096	0.0096	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1},C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.01	0.01	0.0192	FALSE	1	2	0	10	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	EEA1--PYGL	1	1	EEA1	9729	chr12:93245951:-	PYGL	43432	chr14:51404555:-	ONLY_REF_SPLICE	YES	8	56	0.2	0.03	0.0096	0.0096	EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,PYGL->chr14:51324609-51411454:-,phosphorylase,_glycogen,_liver	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.03	0.2	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	13	0	0.13	1	0.0096	0.0096	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.13	1	0.0192	FALSE	125	705	46	456	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	8	1	0.2	0.0096	0.0096	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0.2	1	0.0192	TRUE	458	1351	185	561	0	FALSE	ACH-000207
DETROIT562_UPPER_AERODIGESTIVE_TRACT	SUPT5H--RPS16	1	1	SUPT5H	4818	chr19:39936605:+	RPS16	27073	chr19:39924401:-	ONLY_REF_SPLICE	YES	67	1977	0.03	0	0.0096	0.0096	LOCAL_INVERSION:+:-:[208],SUPT5H->SPT5_homolog,_DSIF_elongation_factor_subunit,chr19:39926796-39967310:+,RPS16->chr19:39923847-39926588:-,ribosomal_protein_S16	DETROIT562_UPPER_AERODIGESTIVE_TRACT	0	0.03	0.0192	FALSE	0	1	0	1	1	FALSE	ACH-000207
KNS81_CENTRAL_NERVOUS_SYSTEM	DNASE1--SULT1A3	44	27	DNASE1	1279	chr16:3662007:+	SULT1A3	27399	chr16:30212046:+	ONLY_REF_SPLICE	YES	7	62	0.91	0.53	0.4943	0.3033	DNASE1->chr16:3661729-3730144:+,deoxyribonuclease_I,SULT1A3->chr16:30205754-30215631:+,sulfotransferase_family_1A_member_3	KNS81_CENTRAL_NERVOUS_SYSTEM	0.53	0.91	0.7976	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	34	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.382	0.2584	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.6404	TRUE	508	994	45	981	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	36	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4045	0.0899	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.4944	FALSE	462	80	0	856	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	DENND5A--LMO1	28	28	DENND5A	1430	chr11:9286508:-	LMO1	35304	chr11:8252051:-	ONLY_REF_SPLICE	YES	25	0	0.69	1	0.3146	0.3146	DENND5A->DENN_domain_containing_5A,chr11:9160372-9286937:-,LMO1->ArcherDX_panel,FoundationOne_panel,LIM_domain_only_1,Oncogene{Bushman},chr11:8245851-8290263:-	KNS81_CENTRAL_NERVOUS_SYSTEM	0.69	1	0.6292	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	28	18	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	1218	217	0.04	0.17	0.3146	0.2022	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	KNS81_CENTRAL_NERVOUS_SYSTEM	0.04	0.17	0.5168	FALSE	76	19	3	26	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	CTB-78F1.2--TENM2	31	0	CTB-78F1.2	1045	chr5:167148412:+	TENM2	11546	chr5:167302991:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3483	0	NEIGHBORS_OVERLAP:+:+:[7761],CTB-78F1.2->chr5:167148368-167156129:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.3483	FALSE	1	3	0	6	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	RAD18--EML6	27	13	RAD18	14138	chr3:8932073:-	EML6	58697	chr2:55176019:+	ONLY_REF_SPLICE	YES	68	1	0.37	0.98	0.3033	0.1461	RAD18->RAD18,_E3_ubiquitin_protein_ligase,chr3:8817088-9005457:-,EML6->chr2:54950636-55199157:+,echinoderm_microtubule_associated_protein_like_6	KNS81_CENTRAL_NERVOUS_SYSTEM	0.37	0.98	0.4494	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	28	6	MT-TA	1053	chrM:5603:-	MT-TC	4081	chrM:5815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3146	0.0674	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.382	FALSE	462	80	0	856	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	RP11-494M8.4--OVCH2	24	18	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	4	0	0.91	1	0.2696	0.2022	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	KNS81_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.4718	FALSE	32	0	0	22	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	17	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	53	60	0.38	0.35	0.191	0.1798	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KNS81_CENTRAL_NERVOUS_SYSTEM	0.35	0.38	0.3708	TRUE	267	562	48	632	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	19	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2135	0.0112	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.2247	FALSE	499	1288	110	792	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	17	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	155	2	0.13	0.92	0.191	0.0674	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KNS81_CENTRAL_NERVOUS_SYSTEM	0.13	0.92	0.2584	TRUE	519	3926	326	965	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	RP11-494M8.4--OVCH2	12	19	RP11-494M8.4	10901	chr11:7775931:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1348	0.2135	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.3483	FALSE	16	1	1	11	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	48	MT-ND4	1741	chrM:11500:+	MT-ND4L	5529	chrM:10620:+	INCL_NON_REF_SPLICE	YES	3193	0	0.02	1	0.0337	0.5393	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KNS81_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.573	FALSE	344	827	44	306	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	13	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1461	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.1461	TRUE	0	0	0	434	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1348	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.1348	TRUE	46	1352	75	139	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	12	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1348	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.1348	TRUE	0	0	0	518	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	35	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	13	2	0.75	0.95	0.0337	0.3932	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KNS81_CENTRAL_NERVOUS_SYSTEM	0.75	0.95	0.4269	FALSE	344	821	44	306	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	10	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	47	62	0.25	0.21	0.1123	0.0674	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KNS81_CENTRAL_NERVOUS_SYSTEM	0.21	0.25	0.1797	TRUE	267	562	48	632	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	8	12	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	1443	217	0.01	0.08	0.0899	0.1348	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	KNS81_CENTRAL_NERVOUS_SYSTEM	0.01	0.08	0.2247	FALSE	38	10	2	29	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	8	10	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	61	0	0.23	1	0.0899	0.1123	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	KNS81_CENTRAL_NERVOUS_SYSTEM	0.23	1	0.2022	FALSE	21	45	1	60	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	TRIM23--7SK	9	3	TRIM23	12822	chr5:64892248:-	7SK	20219	chr5:68325990:-	INCL_NON_REF_SPLICE	YES	27	0	0.31	1	0.1011	0.0337	TRIM23->chr5:64885507-64921802:-,tripartite_motif_containing_23,7SK->chr13:45697228-45697549:+,chr16:81993524-81996298:+,chr21:26467335-26475983:+,chr5:68266266-68325992:-,chr6:136866330-136866630:+,chr8:144624280-144624570:+,chrX:12632122-12632316:-	KNS81_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.1348	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	8	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.0899	0.0449	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS81_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.1348	FALSE	499	1288	110	792	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	7	6	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	1	195	0.93	0.06	0.0786	0.0674	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	KNS81_CENTRAL_NERVOUS_SYSTEM	0.06	0.93	0.146	TRUE	347	1186	183	220	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	8	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0899	0.0112	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.1011	FALSE	499	1288	110	792	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	6	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	116	0	0.09	1	0.0674	0.0562	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	KNS81_CENTRAL_NERVOUS_SYSTEM	0.09	1	0.1236	FALSE	56	216	12	147	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	RP11-494M8.4--OVCH2	6	5	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	21	0	0.34	1	0.0674	0.0562	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	KNS81_CENTRAL_NERVOUS_SYSTEM	0.34	1	0.1236	FALSE	60	13	8	23	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	5	7	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8367	0	0	1	0.0562	0.0786	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KNS81_CENTRAL_NERVOUS_SYSTEM	0	1	0.1348	FALSE	328	800	43	304	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	6	3	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0674	0.0337	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.1011	TRUE	6	15	3	35	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	13	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	5	0	0.76	1	0.0337	0.1461	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KNS81_CENTRAL_NERVOUS_SYSTEM	0.76	1	0.1798	FALSE	344	821	44	306	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	28	1	0.2	0.0674	0.0112	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KNS81_CENTRAL_NERVOUS_SYSTEM	0.2	1	0.0786	TRUE	465	1949	224	605	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	6	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0674	TRUE	0	0	0	434	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	5	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.0562	0.0225	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KNS81_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.0787	TRUE	477	1352	189	275	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	5	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	16	1	0.3	0.0562	0.0225	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KNS81_CENTRAL_NERVOUS_SYSTEM	0.3	1	0.0787	TRUE	458	1351	185	561	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	5	1	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0562	0.0112	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0674	TRUE	4	2	0	28	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0562	FALSE	230	193	14	283	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	5	0	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0562	FALSE	344	827	44	306	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0449	0.0337	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0786	FALSE	499	1288	110	792	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	1	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	11	0	0.31	1	0.0449	0.0112	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KNS81_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.0561	FALSE	344	826	44	306	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	5	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.0337	0.0562	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS81_CENTRAL_NERVOUS_SYSTEM	0.73	1	0.0899	FALSE	499	1288	110	792	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0449	0.0112	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KNS81_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.0561	FALSE	292	1546	117	613	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	2	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0337	0.0225	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS81_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.0562	FALSE	499	1288	110	792	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	TRIM23--CTC-498J12.1	3	2	TRIM23	12822	chr5:64892248:-	CTC-498J12.1	21596	chr5:68334403:-	ONLY_REF_SPLICE	YES	27	0	0.16	1	0.0337	0.0225	TRIM23->chr5:64885507-64921802:-,tripartite_motif_containing_23,CTC-498J12.1->chr5:68334345-68339648:-	KNS81_CENTRAL_NERVOUS_SYSTEM	0.16	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	1	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	18	0	0.18	1	0.0337	0.0112	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KNS81_CENTRAL_NERVOUS_SYSTEM	0.18	1	0.0449	FALSE	344	826	44	306	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	PPP1R12A--PAWR	2	5	PPP1R12A	13635	chr12:80203575:-	PAWR	45995	chr12:80014987:-	ONLY_REF_SPLICE	YES	145	131	0.05	0.05	0.0225	0.0562	{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[82466],PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator	KNS81_CENTRAL_NERVOUS_SYSTEM	0.05	0.05	0.0787	FALSE	0	0	0	1	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	3	0	COL8A1	1190	chr3:99357508:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	FALSE	0	0	0	2	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	CTB-78F1.2--TENM2	3	0	CTB-78F1.2	1045	chr5:167148412:+	TENM2	14028	chr5:167379593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	NEIGHBORS_OVERLAP:+:+:[7761],CTB-78F1.2->chr5:167148368-167156129:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	FALSE	1	4	0	8	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	DNASE1--SULT1A3	3	0	DNASE1	1057	chr16:3661785:+	SULT1A3	27399	chr16:30212046:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	DNASE1->chr16:3661729-3730144:+,deoxyribonuclease_I,SULT1A3->chr16:30205754-30215631:+,sulfotransferase_family_1A_member_3	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	FGFR2--COL14A1	3	0	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	TRUE	0	0	0	32	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	FALSE	344	821	44	306	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	FALSE	499	1288	110	792	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0225	0.0449	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KNS81_CENTRAL_NERVOUS_SYSTEM	0.55	1	0.0674	FALSE	164	806	69	479	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.0225	0.0337	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KNS81_CENTRAL_NERVOUS_SYSTEM	0.62	1	0.0562	FALSE	125	705	46	456	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	AC108142.1--LINC00290	2	2	AC108142.1	9824	chr4:182933815:-	LINC00290	19702	chr4:182076892:-	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0225	0.0225	AC108142.1->chr4:182795591-183066402:-,LINC00290->chr4:181985242-182080302:-,long_intergenic_non-protein_coding_RNA_290	KNS81_CENTRAL_NERVOUS_SYSTEM	0.19	1	0.045	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	1	6	PRR16	6887	chr5:119954260:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	140	0	0.05	1	0.0112	0.0674	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	KNS81_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.0786	FALSE	0	2	0	3	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	1	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	116	0	0.05	1	0.0112	0.0562	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	KNS81_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.0674	FALSE	1	13	0	24	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	TENM2--RARS	2	1	TENM2	9788	chr5:167379827:+	RARS	62098	chr5:167937586:+	ONLY_REF_SPLICE	NO	332	201	0.01	0.01	0.0225	0.0112	TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2,RARS->arginyl-tRNA_synthetase,chr5:167913450-167946304:+	KNS81_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0337	FALSE	0	0	0	1	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	MTAP--NCOA5	2	0	MTAP	12211	chr9:21859424:+	NCOA5	25367	chr20:44699175:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,NCOA5->chr20:44689624-44718591:-,nuclear_receptor_coactivator_5	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	FALSE	16	356	14	466	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	TBC1D14--GTF2H5	2	0	TBC1D14	6339	chr4:6969151:+	GTF2H5	28434	chr6:158613009:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TBC1D14->TBC1_domain_family_member_14,chr4:6910969-7034845:+,GTF2H5->chr6:158589384-158620376:+,general_transcription_factor_IIH_subunit_5	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	TLL2--GLS	2	0	TLL2	5871	chr10:98188388:-	GLS	36267	chr2:191765290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TLL2->chr10:98124363-98273675:-,tolloid_like_2,GLS->chr2:191745553-191830278:+,glutaminase	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0112	0.0225	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KNS81_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	FALSE	515	4851	409	746	0	FALSE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	ADCY9--PPL	1	1	ADCY9	3436	chr16:4163751:-	PPL	29978	chr16:4954041:-	ONLY_REF_SPLICE	YES	29	10	0.06	0.17	0.0112	0.0112	ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,PPL->chr16:4932508-5010742:-,periplakin	KNS81_CENTRAL_NERVOUS_SYSTEM	0.06	0.17	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	ADCY9--PPL	1	1	ADCY9	3436	chr16:4163751:-	PPL	28878	chr16:4960950:-	ONLY_REF_SPLICE	YES	29	0	0.06	1	0.0112	0.0112	ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,PPL->chr16:4932508-5010742:-,periplakin	KNS81_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000479
KNS81_CENTRAL_NERVOUS_SYSTEM	SEPT11--CCNG2	1	1	SEPT11	1228	chr4:77871083:+	CCNG2	30949	chr4:78079686:+	ONLY_REF_SPLICE	YES	386	53	0.01	0.04	0.0112	0.0112	SEPT11->chr4:77870856-77961537:+,septin_11,CCNG2->chr4:78078304-78354542:+,cyclin_G2	KNS81_CENTRAL_NERVOUS_SYSTEM	0.01	0.04	0.0224	FALSE	0	1	0	4	1	FALSE	ACH-000479
HS274T_FIBROBLAST	COL1A1--FN1	386	43	COL1A1	12966	chr17:48266809:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	9593	6503	0.04	0.06	6.6442	0.7402	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS274T_FIBROBLAST	0.04	0.06	7.3844	TRUE	0	0	0	17	0	FALSE	ACH-000134
HS274T_FIBROBLAST	COL1A1--COL6A1	82	1	COL1A1	6491	chr17:48273284:-	COL6A1	32210	chr21:47414081:+	ONLY_REF_SPLICE	YES	9640	2110	0.01	0.04	1.4115	0.0172	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS274T_FIBROBLAST	0.01	0.04	1.4287	TRUE	0	1	0	5	0	FALSE	ACH-000134
HS274T_FIBROBLAST	TIMM23B--LINC00843	73	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2565	0.3443	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS274T_FIBROBLAST	1	1	1.6008	TRUE	508	994	45	981	0	FALSE	ACH-000134
HS274T_FIBROBLAST	OR51S1--TP53I11	72	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2393	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HS274T_FIBROBLAST	1	1	1.2393	TRUE	402	216	10	229	0	FALSE	ACH-000134
HS274T_FIBROBLAST	COL1A2--COL4A1	70	0	COL1A2	4942	chr7:94029571:+	COL4A1	46892	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2049	0	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS274T_FIBROBLAST	1	1	1.2049	TRUE	0	0	0	1	0	TRUE	ACH-000134
HS274T_FIBROBLAST	TIMM23--RP11-464F9.1	38	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	158	3	0.21	0.93	0.6541	0.0689	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS274T_FIBROBLAST	0.21	0.93	0.723	TRUE	519	3926	326	965	0	FALSE	ACH-000134
HS274T_FIBROBLAST	EEF1DP3--FRY	23	5	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	1	4	0.97	0.88	0.3959	0.0861	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS274T_FIBROBLAST	0.88	0.97	0.482	FALSE	20	24	2	21	0	FALSE	ACH-000134
HS274T_FIBROBLAST	MT-TA--MT-TC	22	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3787	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS274T_FIBROBLAST	1	1	0.3787	FALSE	462	80	0	856	0	FALSE	ACH-000134
HS274T_FIBROBLAST	PLXDC1--TAF13	20	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3443	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS274T_FIBROBLAST	1	1	0.3443	TRUE	7	10	0	216	0	FALSE	ACH-000134
HS274T_FIBROBLAST	PRR16--CTD-2334D19.1	14	6	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	22	0	0.48	1	0.241	0.1033	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS274T_FIBROBLAST	0.48	1	0.3443	FALSE	21	45	1	60	0	FALSE	ACH-000134
HS274T_FIBROBLAST	C15orf57--CBX3	12	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	25	13	0.47	0.63	0.2066	0.1721	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS274T_FIBROBLAST	0.47	0.63	0.3787	TRUE	267	562	48	632	0	FALSE	ACH-000134
HS274T_FIBROBLAST	PRR16--CTD-2334D19.1	13	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	104	0	0.13	1	0.2238	0.0344	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS274T_FIBROBLAST	0.13	1	0.2582	FALSE	56	216	12	147	0	FALSE	ACH-000134
HS274T_FIBROBLAST	COL1A1--FN1	3	31	COL1A1	15650	chr17:48264125:-	FN1	58080	chr2:216243979:-	INCL_NON_REF_SPLICE	YES	8669	10674	0	0	0.0516	0.5336	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS274T_FIBROBLAST	0	0	0.5852	TRUE	0	0	0	18	0	FALSE	ACH-000134
HS274T_FIBROBLAST	CHSY3--HSPA8P4	9	4	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	25	0	0.34	1	0.1549	0.0689	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	HS274T_FIBROBLAST	0.34	1	0.2238	FALSE	89	26	1	44	0	FALSE	ACH-000134
HS274T_FIBROBLAST	COL1A1--COL6A1	8	7	COL1A1	12547	chr17:48267228:-	COL6A1	29388	chr21:47410903:+	INCL_NON_REF_SPLICE	YES	10233	603	0	0.02	0.1377	0.1205	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS274T_FIBROBLAST	0	0.02	0.2582	TRUE	0	6	0	3	0	FALSE	ACH-000134
HS274T_FIBROBLAST	COL1A1--COL6A1	5	13	COL1A1	13020	chr17:48266755:-	COL6A1	29388	chr21:47410903:+	INCL_NON_REF_SPLICE	NO	9079	603	0	0.03	0.0861	0.2238	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS274T_FIBROBLAST	0	0.03	0.3099	FALSE	0	6	0	3	0	FALSE	ACH-000134
HS274T_FIBROBLAST	COL1A1--FN1	3	19	COL1A1	13456	chr17:48266319:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	9211	12279	0	0	0.0516	0.327	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS274T_FIBROBLAST	0	0	0.3786	TRUE	0	0	0	16	0	FALSE	ACH-000134
HS274T_FIBROBLAST	RP11-680G10.1--GSE1	7	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1205	0.0172	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS274T_FIBROBLAST	1	1	0.1377	TRUE	458	1351	185	561	0	FALSE	ACH-000134
HS274T_FIBROBLAST	RP11-680G10.1--GSE1	7	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1205	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS274T_FIBROBLAST	1	1	0.1205	TRUE	465	1949	224	605	0	FALSE	ACH-000134
HS274T_FIBROBLAST	COL1A1--COL6A1	5	7	COL1A1	13246	chr17:48266529:-	COL6A1	32210	chr21:47414081:+	ONLY_REF_SPLICE	YES	10262	2110	0	0.01	0.0861	0.1205	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS274T_FIBROBLAST	0	0.01	0.2066	TRUE	0	0	0	3	0	FALSE	ACH-000134
HS274T_FIBROBLAST	COL1A2--COL4A1	5	6	COL1A2	24903	chr7:94052422:+	COL4A1	40232	chr13:110864259:-	INCL_NON_REF_SPLICE	NO	7083	1599	0	0.01	0.0861	0.1033	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS274T_FIBROBLAST	0	0.01	0.1894	FALSE	0	0	0	1	0	FALSE	ACH-000134
HS274T_FIBROBLAST	C15orf57--CBX3	4	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	24	13	0.31	0.46	0.0689	0.1205	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS274T_FIBROBLAST	0.31	0.46	0.1894	TRUE	267	562	48	632	0	FALSE	ACH-000134
HS274T_FIBROBLAST	COL1A1--COL6A1	3	10	COL1A1	12735	chr17:48267040:-	COL6A1	29378	chr21:47410893:+	ONLY_REF_SPLICE	YES	10513	616	0	0.02	0.0516	0.1721	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS274T_FIBROBLAST	0	0.02	0.2237	TRUE	0	6	0	3	0	FALSE	ACH-000134
HS274T_FIBROBLAST	COL1A1--FN1	3	10	COL1A1	6826	chr17:48272949:-	FN1	22519	chr2:216300502:-	INCL_NON_REF_SPLICE	YES	8583	6098	0	0	0.0516	0.1721	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS274T_FIBROBLAST	0	0	0.2237	TRUE	0	0	0	13	0	FALSE	ACH-000134
HS274T_FIBROBLAST	COL1A1--COL6A1	5	1	COL1A1	12405	chr17:48267370:-	COL6A1	33571	chr21:47417633:+	INCL_NON_REF_SPLICE	NO	10012	1746	0	0	0.0861	0.0172	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS274T_FIBROBLAST	0	0	0.1033	FALSE	0	6	0	4	0	FALSE	ACH-000134
HS274T_FIBROBLAST	COL1A2--COL6A2	5	0	COL1A2	4948	chr7:94029577:+	COL6A2	50044	chr21:47544806:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0861	0	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=4;pct=0.05%;dist=Cells_-_Transformed_fibroblasts=4},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS274T_FIBROBLAST	1	1	0.0861	TRUE	0	0	0	1	0	TRUE	ACH-000134
HS274T_FIBROBLAST	COL1A2--COL6A2	4	2	COL1A2	10750	chr7:94038135:+	COL6A2	42516	chr21:47536565:+	ONLY_REF_SPLICE	YES	5266	2136	0	0	0.0689	0.0344	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=4;pct=0.05%;dist=Cells_-_Transformed_fibroblasts=4},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS274T_FIBROBLAST	0	0	0.1033	TRUE	0	0	0	2	0	FALSE	ACH-000134
HS274T_FIBROBLAST	COL1A2--COL4A1	3	5	COL1A2	27439	chr7:94054958:+	COL4A1	48566	chr13:110853218:-	INCL_NON_REF_SPLICE	NO	6577	1296	0	0.01	0.0516	0.0861	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS274T_FIBROBLAST	0	0.01	0.1377	FALSE	0	0	0	2	0	FALSE	ACH-000134
HS274T_FIBROBLAST	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0689	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS274T_FIBROBLAST	1	1	0.0689	FALSE	292	1546	117	613	0	FALSE	ACH-000134
HS274T_FIBROBLAST	COL1A1--COL6A1	3	0	COL1A1	4656	chr17:48275119:-	COL6A1	35509	chr21:47419571:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS274T_FIBROBLAST	1	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000134
HS274T_FIBROBLAST	NRIP1--AF127936.7	3	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0516	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS274T_FIBROBLAST	1	1	0.0516	FALSE	125	705	46	456	0	FALSE	ACH-000134
HS274T_FIBROBLAST	HIBADH--TAX1BP1	2	2	HIBADH	2459	chr7:27689092:-	TAX1BP1	22713	chr7:27824782:+	ONLY_REF_SPLICE	YES	84	365	0.05	0.01	0.0344	0.0344	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Putamen_(basal_ganglia)=1,Lung=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[76336],HIBADH->3-hydroxyisobutyrate_dehydrogenase,chr7:27565061-27702614:-,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	HS274T_FIBROBLAST	0.01	0.05	0.0688	FALSE	0	0	0	1	0	FALSE	ACH-000134
HS274T_FIBROBLAST	EEF1DP3--FRY	2	1	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	10	4	0.23	0.43	0.0344	0.0172	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS274T_FIBROBLAST	0.23	0.43	0.0516	FALSE	18	26	2	21	0	FALSE	ACH-000134
HS274T_FIBROBLAST	RP11-634B7.4--TRIM58	2	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	NO	0	30	1	0.09	0.0344	0.0172	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	HS274T_FIBROBLAST	0.09	1	0.0516	TRUE	158	633	76	73	0	FALSE	ACH-000134
HS274T_FIBROBLAST	RP11-111M22.3--DIAPH3	2	0	RP11-111M22.3	1379	chr11:76155322:-	DIAPH3	26362	chr13:60485970:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0344	0	RP11-111M22.3->chr11:76152382-76155700:-,DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3	HS274T_FIBROBLAST	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000134
HS274T_FIBROBLAST	COL1A1--COL6A1	1	3	COL1A1	7693	chr17:48272082:-	COL6A1	29378	chr21:47410893:+	ONLY_REF_SPLICE	NO	8251	616	0	0.01	0.0172	0.0516	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS274T_FIBROBLAST	0	0.01	0.0688	FALSE	0	0	0	1	0	FALSE	ACH-000134
HS274T_FIBROBLAST	COL1A2--COL6A2	1	3	COL1A2	15874	chr7:94043259:+	COL6A2	42242	chr21:47536291:+	ONLY_REF_SPLICE	NO	5792	2214	0	0	0.0172	0.0516	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=4;pct=0.05%;dist=Cells_-_Transformed_fibroblasts=4},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS274T_FIBROBLAST	0	0	0.0688	FALSE	0	0	0	1	0	FALSE	ACH-000134
HS274T_FIBROBLAST	PRR16--CTD-2334D19.1	1	2	PRR16	6887	chr5:119954260:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	111	0	0.03	1	0.0172	0.0344	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS274T_FIBROBLAST	0.03	1	0.0516	FALSE	0	2	0	14	0	FALSE	ACH-000134
HS274T_FIBROBLAST	COL1A2--COL4A1	1	1	COL1A2	11748	chr7:94039133:+	COL4A1	59343	chr13:110831768:-	ONLY_REF_SPLICE	YES	6124	1331	0	0	0.0172	0.0172	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS274T_FIBROBLAST	0	0	0.0344	FALSE	0	0	0	1	0	FALSE	ACH-000134
HS274T_FIBROBLAST	SCAF4--CHMP1A	1	1	SCAF4	16796	chr21:33057362:-	CHMP1A	27950	chr16:89713739:-	ONLY_REF_SPLICE	YES	27	171	0.07	0.01	0.0172	0.0172	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=22;pct=0.25%;dist=Small_Intestine_-_Terminal_Ileum=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Breast_-_Mammary_Tissue=1,Lung=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Brain_-_Frontal_Cortex_(BA9)=1,Uterus=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellar_Hemisphere=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Testis=1,Cells_-_Transformed_fibroblasts=1},SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HS274T_FIBROBLAST	0.01	0.07	0.0344	FALSE	8	8	2	7	0	FALSE	ACH-000134
COLO800_SKIN	HEG1--CLSTN2	286	132	HEG1	15790	chr3:124716533:-	CLSTN2	32125	chr3:140122471:+	ONLY_REF_SPLICE	YES	96	0	0.81	1	2.8259	1.3043	{Klijn_CCL:Skin=1},HEG1->chr3:124684554-124774802:-,heart_development_protein_with_EGF_like_domains_1,CLSTN2->calsyntenin_2,chr3:139654027-140296239:+	COLO800_SKIN	0.81	1	4.1302	TRUE	0	0	0	1	0	TRUE	ACH-000401
COLO800_SKIN	KANSL1--ARL17B	100	41	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	13	15	0.92	0.9	0.9881	0.4051	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	COLO800_SKIN	0.9	0.92	1.3932	TRUE	181	1564	124	196	0	FALSE	ACH-000401
COLO800_SKIN	CD63--TGFBI	106	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0474	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	COLO800_SKIN	1	1	1.0474	TRUE	0	0	0	14	0	TRUE	ACH-000401
COLO800_SKIN	TIMM23B--LINC00843	63	9	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6225	0.0889	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COLO800_SKIN	1	1	0.7114	TRUE	508	994	45	981	0	FALSE	ACH-000401
COLO800_SKIN	MT-ND6--MT-TE	58	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5731	0.0099	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO800_SKIN	1	1	0.583	FALSE	499	1288	110	792	0	FALSE	ACH-000401
COLO800_SKIN	TIMM23--RP11-464F9.1	38	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3755	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	COLO800_SKIN	1	1	0.3755	TRUE	519	3926	326	965	0	FALSE	ACH-000401
COLO800_SKIN	MT-ND6--MT-TE	19	20	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.1877	0.1976	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO800_SKIN	0.95	1	0.3853	FALSE	499	1288	110	792	0	FALSE	ACH-000401
COLO800_SKIN	MT-ND6--MT-TE	19	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1877	0.0198	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO800_SKIN	1	1	0.2075	FALSE	499	1288	110	792	0	FALSE	ACH-000401
COLO800_SKIN	NPM1P24--SET	19	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1877	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	COLO800_SKIN	1	1	0.1877	TRUE	0	0	0	434	0	FALSE	ACH-000401
COLO800_SKIN	RP11-141M1.3--STARD13	16	11	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	6	31	0.82	0.47	0.1581	0.1087	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	COLO800_SKIN	0.47	0.82	0.2668	FALSE	49	120	16	70	0	FALSE	ACH-000401
COLO800_SKIN	RP11-141M1.3--STARD13	15	7	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	6	31	0.79	0.42	0.1482	0.0692	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	COLO800_SKIN	0.42	0.79	0.2174	FALSE	141	264	50	91	0	FALSE	ACH-000401
COLO800_SKIN	MT-ND5--MT-ATP8	15	4	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	NO	2119	39	0.01	0.33	0.1482	0.0395	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO800_SKIN	0.01	0.33	0.1877	FALSE	43	37	8	105	0	FALSE	ACH-000401
COLO800_SKIN	DCBLD2--RP11-666A20.4	14	4	DCBLD2	18529	chr3:98530038:-	RP11-666A20.4	30882	chr3:125627403:-	ONLY_REF_SPLICE	YES	162	0	0.1	1	0.1383	0.0395	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,RP11-666A20.4->chr3:125626848-125629115:-	COLO800_SKIN	0.1	1	0.1778	TRUE	0	0	0	1	0	TRUE	ACH-000401
COLO800_SKIN	SDC3--MT-CO1	13	1	SDC3	9594	chr1:31346033:-	MT-CO1	16956	chrM:6546:+	INCL_NON_REF_SPLICE	YES	844	11094	0.02	0	0.1284	0.0099	SDC3->Oncogene{Bushman},chr1:31342314-31381608:-,syndecan_3,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO800_SKIN	0	0.02	0.1383	FALSE	0	0	0	1	0	FALSE	ACH-000401
COLO800_SKIN	MT-ND6--MT-TE	9	15	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0889	0.1482	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO800_SKIN	1	1	0.2371	FALSE	499	1288	110	792	0	FALSE	ACH-000401
COLO800_SKIN	MT-ND5--MT-ATP8	10	10	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4	1	0.83	0.95	0.0988	0.0988	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO800_SKIN	0.83	0.95	0.1976	FALSE	43	37	8	105	0	FALSE	ACH-000401
COLO800_SKIN	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1186	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	COLO800_SKIN	1	1	0.1186	TRUE	46	1352	75	139	0	FALSE	ACH-000401
COLO800_SKIN	C15orf57--CBX3	9	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	41	63	0.32	0.23	0.0889	0.0988	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COLO800_SKIN	0.23	0.32	0.1877	TRUE	267	562	48	632	0	FALSE	ACH-000401
COLO800_SKIN	DCBLD2--RP11-379B18.5	10	3	DCBLD2	18529	chr3:98530038:-	RP11-379B18.5	41961	chr3:125546298:-	ONLY_REF_SPLICE	YES	162	8	0.07	0.62	0.0988	0.0296	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,RP11-379B18.5->chr3:125546081-125607918:-	COLO800_SKIN	0.07	0.62	0.1284	TRUE	0	0	0	1	0	TRUE	ACH-000401
COLO800_SKIN	HSP90AB1--MT-RNR2	10	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2951	0	0	1	0.0988	0.0099	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO800_SKIN	0	1	0.1087	FALSE	13	9	0	364	0	FALSE	ACH-000401
COLO800_SKIN	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0988	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	COLO800_SKIN	1	1	0.0988	TRUE	0	0	0	434	0	FALSE	ACH-000401
COLO800_SKIN	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2892	0	0	1	0.0889	0.0099	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO800_SKIN	0	1	0.0988	FALSE	13	9	0	364	0	FALSE	ACH-000401
COLO800_SKIN	MT-ND5--MT-ATP8	7	4	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3159	77	0	0.12	0.0692	0.0395	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO800_SKIN	0	0.12	0.1087	FALSE	43	37	8	105	0	FALSE	ACH-000401
COLO800_SKIN	MT-ND6--MT-TE	8	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.079	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO800_SKIN	1	1	0.079	FALSE	499	1288	110	792	0	FALSE	ACH-000401
COLO800_SKIN	MT-ND6--MT-TE	3	20	MT-ND6	1342	chrM:14332:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	89	0	0.21	1	0.0296	0.1976	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO800_SKIN	0.21	1	0.2272	FALSE	499	1288	110	792	0	FALSE	ACH-000401
COLO800_SKIN	PLXDC1--TAF13	8	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.079	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	COLO800_SKIN	1	1	0.079	TRUE	7	10	0	216	0	FALSE	ACH-000401
COLO800_SKIN	RP11-444D3.1--SOX5	7	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	8	1	0.56	0.0692	0.0296	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	COLO800_SKIN	0.56	1	0.0988	TRUE	477	1352	189	275	0	FALSE	ACH-000401
COLO800_SKIN	C15orf57--CBX3	5	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	38	65	0.27	0.18	0.0494	0.0889	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COLO800_SKIN	0.18	0.27	0.1383	TRUE	267	562	48	632	0	FALSE	ACH-000401
COLO800_SKIN	MT-ND6--MT-TE	4	7	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0.0692	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO800_SKIN	1	1	0.1087	FALSE	499	1288	110	792	0	FALSE	ACH-000401
COLO800_SKIN	MT-ND5--MT-ATP8	3	10	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.93	0.0296	0.0988	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO800_SKIN	0.93	1	0.1284	FALSE	43	37	8	105	0	FALSE	ACH-000401
COLO800_SKIN	MT-ND5--MT-ATP8	3	10	MT-ND5	2749	chrM:14085:+	MT-ATP8	5896	chrM:8449:+	INCL_NON_REF_SPLICE	YES	1	2	0.93	0.87	0.0296	0.0988	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO800_SKIN	0.87	0.93	0.1284	FALSE	43	37	8	105	0	FALSE	ACH-000401
COLO800_SKIN	RP11-123O10.4--GRIP1	5	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0494	0.0198	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO800_SKIN	1	1	0.0692	FALSE	416	2512	207	587	0	FALSE	ACH-000401
COLO800_SKIN	ACTN4--MT-CO1	5	1	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	428	10913	0.01	0	0.0494	0.0099	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO800_SKIN	0	0.01	0.0593	FALSE	0	0	0	30	0	FALSE	ACH-000401
COLO800_SKIN	MT-ND6--MT-TE	5	1	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0494	0.0099	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO800_SKIN	1	1	0.0593	FALSE	499	1288	110	792	0	FALSE	ACH-000401
COLO800_SKIN	MT-ND5--MT-ATP8	5	0	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0494	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO800_SKIN	1	1	0.0494	FALSE	41	30	6	102	0	FALSE	ACH-000401
COLO800_SKIN	MT-ND5--MT-ATP8	4	3	MT-ND5	2740	chrM:14076:+	MT-ATP8	5938	chrM:8491:+	INCL_NON_REF_SPLICE	YES	0	915	1	0.01	0.0395	0.0296	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO800_SKIN	0.01	1	0.0691	FALSE	43	37	8	105	0	FALSE	ACH-000401
COLO800_SKIN	KANSL1--ARL17B	2	10	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	18	15	0.4	0.44	0.0198	0.0988	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	COLO800_SKIN	0.4	0.44	0.1186	TRUE	105	90	7	93	0	FALSE	ACH-000401
COLO800_SKIN	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0395	0.0198	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COLO800_SKIN	1	1	0.0593	TRUE	458	1351	185	561	0	FALSE	ACH-000401
COLO800_SKIN	DCBLD2--RP11-666A20.4	3	4	DCBLD2	18529	chr3:98530038:-	RP11-666A20.4	30877	chr3:125627408:-	INCL_NON_REF_SPLICE	YES	162	0	0.04	1	0.0296	0.0395	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,RP11-666A20.4->chr3:125626848-125629115:-	COLO800_SKIN	0.04	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000401
COLO800_SKIN	RP11-444D3.1--SOX5	3	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	10	1	0.38	0.0296	0.0296	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	COLO800_SKIN	0.38	1	0.0592	TRUE	160	277	29	98	0	FALSE	ACH-000401
COLO800_SKIN	KANSL1--ARL17B	3	1	KANSL1	7536	chr17:44248221:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	18	2	0.18	0.67	0.0296	0.0099	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	COLO800_SKIN	0.18	0.67	0.0395	TRUE	16	5	0	9	0	FALSE	ACH-000401
COLO800_SKIN	NPM1P24--SET	3	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	32	654	0.11	0.01	0.0296	0.0099	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	COLO800_SKIN	0.01	0.11	0.0395	FALSE	0	0	0	434	0	FALSE	ACH-000401
COLO800_SKIN	LINC00473--PDE10A	3	0	LINC00473	1520	chr6:166401017:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	COLO800_SKIN	1	1	0.0296	FALSE	6	13	0	15	0	FALSE	ACH-000401
COLO800_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO800_SKIN	1	1	0.0296	FALSE	499	1288	110	792	0	FALSE	ACH-000401
COLO800_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO800_SKIN	1	1	0.0296	FALSE	499	1288	110	792	0	FALSE	ACH-000401
COLO800_SKIN	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COLO800_SKIN	1	1	0.0296	TRUE	465	1949	224	605	0	FALSE	ACH-000401
COLO800_SKIN	RP11-141M1.3--STARD13	1	5	RP11-141M1.3	5599	chr13:34098375:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	14	31	0.3	0.16	0.0099	0.0494	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	COLO800_SKIN	0.16	0.3	0.0593	FALSE	9	22	2	16	0	FALSE	ACH-000401
COLO800_SKIN	DCBLD2--RP11-379B18.5	1	4	DCBLD2	18529	chr3:98530038:-	RP11-379B18.5	35121	chr3:125592688:-	ONLY_REF_SPLICE	NO	162	21	0.03	0.19	0.0099	0.0395	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,RP11-379B18.5->chr3:125546081-125607918:-	COLO800_SKIN	0.03	0.19	0.0494	TRUE	0	0	0	1	0	FALSE	ACH-000401
COLO800_SKIN	FAM20C--PRKAR1B	2	0	FAM20C	5852	chr7:208976:+	PRKAR1B	28324	chr7:647089:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cortex=1},{Klijn_CCL:Skin=1},FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	COLO800_SKIN	1	1	0.0198	TRUE	0	2	0	2	0	TRUE	ACH-000401
COLO800_SKIN	DCBLD2--RP11-379B18.5	1	3	DCBLD2	18529	chr3:98530038:-	RP11-379B18.5	36226	chr3:125591096:-	ONLY_REF_SPLICE	YES	162	12	0.02	0.25	0.0099	0.0296	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,RP11-379B18.5->chr3:125546081-125607918:-	COLO800_SKIN	0.02	0.25	0.0395	TRUE	0	0	0	1	0	FALSE	ACH-000401
COLO800_SKIN	APP--GNAS	1	1	APP	20667	chr21:27326904:-	GNAS	48012	chr20:57470667:+	ONLY_REF_SPLICE	NO	1281	871	0	0	0.0099	0.0099	GTEx&tcga_normals:2/3694=0.05%,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	COLO800_SKIN	0	0	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000401
COLO800_SKIN	MFI2--CNBP	1	1	MFI2	8872	chr3:196748275:-	CNBP	27198	chr3:128890614:-	ONLY_REF_SPLICE	YES	773	1124	0	0	0.0099	0.0099	MFI2->chr3:196715492-196756687:-,CNBP->CCHC-type_zinc_finger_nucleic_acid_binding_protein,chr3:128888327-128902765:-	COLO800_SKIN	0	0	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000401
COLO800_SKIN	TULP3--SNX1	1	1	TULP3	3214	chr12:3018746:+	SNX1	30978	chr15:64426863:+	ONLY_REF_SPLICE	NO	43	358	0.04	0.01	0.0099	0.0099	TULP3->chr12:2986389-3050306:+,tubby_like_protein_3,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	COLO800_SKIN	0.01	0.04	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000401
MDAMB175VII_BREAST	UPK3B--PMS2P10	4	734	UPK3B	9229	chr7:76648314:+	PMS2P10	12263	chr7:74928921:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	9.5104	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P10->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_10,chr7:74916804-74928928:-	MDAMB175VII_BREAST	1	1	9.5622	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	149	0	MTND4P12	1209	chr5:134263518:-	MTATP8P1	5477	chr1:569014:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.9306	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	1	1	1.9306	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	TENM4--NRG1	107	52	TENM4	25756	chr11:78565149:-	NRG1	66574	chr8:32453346:+	ONLY_REF_SPLICE	YES	19	0	0.89	1	1.3864	0.6738	TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4,NRG1->chr8:31496902-32622548:+,neuregulin_1	MDAMB175VII_BREAST	0.89	1	2.0602	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	WI2-1896O14.1--RP11-353N4.1	93	19	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.205	0.2462	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	MDAMB175VII_BREAST	1	1	1.4512	TRUE	361	258	24	38	0	FALSE	ACH-000759
MDAMB175VII_BREAST	PPP6R3--TENM4	75	82	PPP6R3	1110	chr11:68228295:+	TENM4	45342	chr11:78926954:-	ONLY_REF_SPLICE	YES	1	2	0.99	0.99	0.9718	1.0625	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	MDAMB175VII_BREAST	0.99	0.99	2.0343	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	TIMM23B--LINC00843	80	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0366	0.1814	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MDAMB175VII_BREAST	1	1	1.218	TRUE	508	994	45	981	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND6--MT-TE	70	8	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.907	0.1037	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB175VII_BREAST	1	1	1.0107	FALSE	499	1288	110	792	0	FALSE	ACH-000759
MDAMB175VII_BREAST	PTPRN2--DDX11L9	67	19	PTPRN2	15088	chr7:157691365:-	DDX11L9	32145	chr15:102519160:-	INCL_NON_REF_SPLICE	YES	182	1	0.32	0.99	0.8681	0.2462	PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,DDX11L9->DEAD/H-box_helicase_11_like_9,chr15:102516758-102519298:-	MDAMB175VII_BREAST	0.32	0.99	1.1143	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	OR51S1--TP53I11	70	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.907	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	MDAMB175VII_BREAST	1	1	0.907	TRUE	402	216	10	229	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	68	6	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7139	5	0.01	0.94	0.8811	0.0777	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	0.01	0.94	0.9588	FALSE	43	37	8	105	0	FALSE	ACH-000759
MDAMB175VII_BREAST	TPCN2--RSF1	59	24	TPCN2	4647	chr11:68825162:+	RSF1	32948	chr11:77451981:-	ONLY_REF_SPLICE	YES	68	48	0.55	0.63	0.7645	0.311	{Klijn_CCL:Breast=1},TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1	MDAMB175VII_BREAST	0.55	0.63	1.0755	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	TIAM1--MIS18A	49	19	TIAM1	2051	chr21:32931240:-	MIS18A	42048	chr21:33647207:-	ONLY_REF_SPLICE	YES	7	61	0.91	0.53	0.6349	0.2462	TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-,MIS18A->MIS18_kinetochore_protein_A,chr21:33640530-33651380:-	MDAMB175VII_BREAST	0.53	0.91	0.8811	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MT-ND4--MT-ND4L	3	195	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	22	0	0.9	1	0.0389	2.5266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB175VII_BREAST	0.9	1	2.5655	FALSE	344	826	44	306	0	FALSE	ACH-000759
MDAMB175VII_BREAST	TIMM23--RP11-464F9.1	47	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.609	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MDAMB175VII_BREAST	1	1	0.609	TRUE	519	3926	326	965	0	FALSE	ACH-000759
MDAMB175VII_BREAST	HSPBP1--GRK5	43	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5572	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	MDAMB175VII_BREAST	1	1	0.5572	TRUE	1	39	0	134	39	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND4--MT-ND4L	7	139	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	0	0.97	1	0.0907	1.801	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB175VII_BREAST	0.97	1	1.8917	FALSE	344	821	44	306	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND4--MT-ND4L	3	139	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	10	0	0.93	1	0.0389	1.801	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB175VII_BREAST	0.93	1	1.8399	FALSE	344	826	44	306	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND6--MT-TE	27	25	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.3498	0.3239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB175VII_BREAST	0.96	1	0.6737	FALSE	499	1288	110	792	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND6--MT-TE	28	9	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3628	0.1166	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB175VII_BREAST	1	1	0.4794	FALSE	499	1288	110	792	0	FALSE	ACH-000759
MDAMB175VII_BREAST	PPP6R3--TENM4	6	82	PPP6R3	1110	chr11:68228295:+	TENM4	44198	chr11:78932168:-	ONLY_REF_SPLICE	YES	1	3	0.99	0.97	0.0777	1.0625	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	MDAMB175VII_BREAST	0.97	0.99	1.1402	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	RSF1--TENM4	23	7	RSF1	7572	chr11:77458081:-	TENM4	63794	chr11:78516537:-	ONLY_REF_SPLICE	YES	50	22	0.38	0.58	0.298	0.0907	RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	MDAMB175VII_BREAST	0.38	0.58	0.3887	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MT-TA--MT-TC	22	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2851	0.013	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB175VII_BREAST	1	1	0.2981	FALSE	462	80	0	856	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	18	14	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.2332	0.1814	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	0.94	1	0.4146	FALSE	43	37	8	105	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	20	5	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7877	41	0	0.38	0.2591	0.0648	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	0	0.38	0.3239	FALSE	43	37	8	105	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-TA--MT-TC	20	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2591	0.013	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB175VII_BREAST	1	1	0.2721	FALSE	462	80	0	856	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND6--MT-TE	10	40	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.1296	0.5183	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB175VII_BREAST	0.96	1	0.6479	FALSE	499	1288	110	792	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	19	0	MTND4P12	1216	chr5:134263511:-	MTATP8P1	5480	chr1:569017:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2462	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	1	1	0.2462	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	18	2	MTND4P12	1999	chr5:134262728:-	MTATP8P1	5474	chr1:569011:+	INCL_NON_REF_SPLICE	YES	2	3	0.91	0.87	0.2332	0.0259	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	0.87	0.91	0.2591	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MT-ND4--MT-ND4L	3	59	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0389	0.7645	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB175VII_BREAST	0.97	1	0.8034	FALSE	344	821	44	306	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	14	10	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	2	474	0.92	0.05	0.1814	0.1296	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	0.05	0.92	0.311	FALSE	43	37	8	105	0	FALSE	ACH-000759
MDAMB175VII_BREAST	SLC1A5--MT-ND4L	16	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	587	0	0.03	1	0.2073	0.013	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB175VII_BREAST	0.03	1	0.2203	FALSE	0	0	0	189	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND3--MT-ATP8	16	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2073	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	1	1	0.2073	FALSE	351	233	23	137	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND6--MT-TE	8	29	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1037	0.3758	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB175VII_BREAST	1	1	0.4795	FALSE	499	1288	110	792	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND4--MT-ND4L	3	48	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	80	0	0.39	1	0.0389	0.6219	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB175VII_BREAST	0.39	1	0.6608	FALSE	344	827	44	306	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MUC5B--MT-ATP6	14	4	MUC5B	37133	chr11:1282732:+	MT-ATP6	41208	chrM:8927:+	INCL_NON_REF_SPLICE	YES	700	10387	0.03	0	0.1814	0.0518	MUC5B->chr11:1244296-1283406:+,mucin_5B,_oligomeric_mucus/gel-forming,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MDAMB175VII_BREAST	0	0.03	0.2332	FALSE	2	0	0	6	0	FALSE	ACH-000759
MDAMB175VII_BREAST	C7orf50--ZFAND2A	12	8	C7orf50	3078	chr7:1166893:-	ZFAND2A	18758	chr7:1197893:-	ONLY_REF_SPLICE	YES	157	123	0.11	0.14	0.1555	0.1037	LOCAL_REARRANGEMENT:-:[13811],C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,ZFAND2A->chr7:1191707-1200395:-,zinc_finger_AN1-type_containing_2A	MDAMB175VII_BREAST	0.11	0.14	0.2592	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MT-ND4--MT-ND4L	5	32	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9834	0	0	1	0.0648	0.4146	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB175VII_BREAST	0	1	0.4794	FALSE	344	827	44	306	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND4--MT-ND4L	6	28	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	33	0	0.51	1	0.0777	0.3628	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB175VII_BREAST	0.51	1	0.4405	FALSE	344	826	44	306	0	FALSE	ACH-000759
MDAMB175VII_BREAST	UPK3B--PMS2P10	13	0	UPK3B	7014	chr7:76157169:+	PMS2P10	17042	chr7:74917288:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1684	0	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P10->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_10,chr7:74916804-74928928:-	MDAMB175VII_BREAST	1	1	0.1684	TRUE	0	6	0	1	6	TRUE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	12	2	MTND4P12	1966	chr5:134262761:-	MTATP8P1	5439	chr1:568976:+	INCL_NON_REF_SPLICE	NO	2	0	0.88	1	0.1555	0.0259	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	0.88	1	0.1814	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	NRIP1--AF127936.7	12	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.68	1	0.1555	0.013	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB175VII_BREAST	0.68	1	0.1685	FALSE	292	1546	117	613	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND4--MT-ND4L	5	28	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.0648	0.3628	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB175VII_BREAST	0.89	1	0.4276	FALSE	344	821	44	306	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND6--MT-TE	4	30	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	6	0	0.85	1	0.0518	0.3887	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB175VII_BREAST	0.85	1	0.4405	FALSE	499	1288	110	792	0	FALSE	ACH-000759
MDAMB175VII_BREAST	NIPA2--POLA1	11	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1425	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	MDAMB175VII_BREAST	1	1	0.1425	TRUE	46	1352	75	139	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MRPL48--GAB2	9	7	MRPL48	6026	chr11:73519395:+	GAB2	25376	chr11:77991947:-	ONLY_REF_SPLICE	YES	28	3	0.36	0.84	0.1166	0.0907	{Klijn_CCL:Breast=1},MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	MDAMB175VII_BREAST	0.36	0.84	0.2073	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MT-ND6--MT-TE	3	28	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0389	0.3628	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB175VII_BREAST	0.97	1	0.4017	FALSE	499	1288	110	792	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	7	10	MT-ND5	2518	chrM:13854:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5865	0	0	1	0.0907	0.1296	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	0	1	0.2203	FALSE	43	37	8	105	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND6--MT-TE	3	25	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0389	0.3239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB175VII_BREAST	0.97	1	0.3628	FALSE	499	1288	110	792	0	FALSE	ACH-000759
MDAMB175VII_BREAST	RSF1--TENM4	8	5	RSF1	3931	chr11:77475643:-	TENM4	63794	chr11:78516537:-	ONLY_REF_SPLICE	YES	33	22	0.28	0.37	0.1037	0.0648	RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	MDAMB175VII_BREAST	0.28	0.37	0.1685	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	TRNT1--CNTN4	9	1	TRNT1	8754	chr3:3182332:+	CNTN4	30579	chr3:2861170:+	ONLY_REF_SPLICE	YES	37	1	0.21	0.91	0.1166	0.013	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[68955],TRNT1->chr3:3168600-3192563:+,tRNA_nucleotidyl_transferase,_CCA-adding,_1,CNTN4->Oncogene{Bushman},chr3:2140497-3099645:+,contactin_4	MDAMB175VII_BREAST	0.21	0.91	0.1296	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	FXYD3--MT-ND5	9	0	FXYD3	8292	chr19:35614212:+	MT-ND5	13036	chrM:13064:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1166	0	FXYD3->FXYD_domain_containing_ion_transport_regulator_3,chr19:35606732-35615228:+,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	MDAMB175VII_BREAST	1	1	0.1166	FALSE	0	0	0	3	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND4--MT-ND4L	3	21	MT-ND4	1093	chrM:10852:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	4	0	0.86	1	0.0389	0.2721	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB175VII_BREAST	0.86	1	0.311	FALSE	344	826	44	306	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	8	1	MTND4P12	2007	chr5:134262720:-	MTATP8P1	5486	chr1:569023:+	INCL_NON_REF_SPLICE	YES	3	2	0.75	0.82	0.1037	0.013	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	0.75	0.82	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	CTSD--MT-ATP6	7	4	CTSD	6099	chr11:1778655:-	MT-ATP6	12844	chrM:8573:+	INCL_NON_REF_SPLICE	YES	6734	0	0	1	0.0907	0.0518	CTSD->cathepsin_D,chr11:1773982-1785222:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MDAMB175VII_BREAST	0	1	0.1425	FALSE	0	0	0	1	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MRPL48--GAB2	6	8	MRPL48	6026	chr11:73519395:+	GAB2	22090	chr11:78075149:-	ONLY_REF_SPLICE	YES	28	1	0.33	0.93	0.0777	0.1037	{Klijn_CCL:Breast=1},MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	MDAMB175VII_BREAST	0.33	0.93	0.1814	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MT-CO2--MT-ND2	8	0	MT-CO2	1123	chrM:7708:+	MT-ND2	5141	chrM:4926:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1037	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MDAMB175VII_BREAST	1	1	0.1037	FALSE	105	46	5	21	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND4--MT-ND4L	4	15	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	101	0	0.16	1	0.0518	0.1944	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB175VII_BREAST	0.16	1	0.2462	FALSE	344	827	44	306	0	FALSE	ACH-000759
MDAMB175VII_BREAST	C7orf50--ZFAND2A	5	10	C7orf50	3078	chr7:1166893:-	ZFAND2A	17237	chr7:1200120:-	ONLY_REF_SPLICE	YES	157	0	0.09	1	0.0648	0.1296	LOCAL_REARRANGEMENT:-:[13811],C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,ZFAND2A->chr7:1191707-1200395:-,zinc_finger_AN1-type_containing_2A	MDAMB175VII_BREAST	0.09	1	0.1944	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MT-ND6--MT-TE	3	17	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.0389	0.2203	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB175VII_BREAST	0.91	1	0.2592	FALSE	499	1288	110	792	0	FALSE	ACH-000759
MDAMB175VII_BREAST	RP11-123O10.4--GRIP1	7	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0907	0.013	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MDAMB175VII_BREAST	1	1	0.1037	FALSE	416	2512	207	587	0	FALSE	ACH-000759
MDAMB175VII_BREAST	LY6E--S100A6	6	4	LY6E	4687	chr8:144103227:+	S100A6	9963	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	3770	5	0	0.67	0.0777	0.0518	LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	MDAMB175VII_BREAST	0	0.67	0.1295	TRUE	0	0	0	7	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND3--MT-ATP8	7	0	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0907	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	1	1	0.0907	FALSE	351	233	23	137	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	3	16	MT-ND5	2813	chrM:14149:+	MT-ATP8	5870	chrM:8423:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0.2073	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	1	1	0.2462	FALSE	43	37	8	105	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND6--MT-TE	7	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0907	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB175VII_BREAST	1	1	0.0907	FALSE	499	1288	110	792	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	7	0	MTND4P12	1828	chr5:134262899:-	MTATP8P1	5484	chr1:569021:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0907	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	1	1	0.0907	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	RP11-499F3.2--TYW1	7	0	RP11-499F3.2	1198	chr15:82163269:-	TYW1	23788	chr7:66648113:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0907	0	RP11-499F3.2->chr15:81952823-82163466:-,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	MDAMB175VII_BREAST	1	1	0.0907	TRUE	1	3	0	7	3	TRUE	ACH-000759
MDAMB175VII_BREAST	UPK3B--MT-CO3	7	0	UPK3B	5486	chr7:76144431:+	MT-CO3	12256	chrM:9207:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0907	0	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MDAMB175VII_BREAST	1	1	0.0907	FALSE	0	0	0	3	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	4	11	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7	5	0.68	0.75	0.0518	0.1425	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	0.68	0.75	0.1943	FALSE	43	37	8	105	0	FALSE	ACH-000759
MDAMB175VII_BREAST	TPCN2--RSF1	5	7	TPCN2	4647	chr11:68825162:+	RSF1	34154	chr11:77436744:-	ONLY_REF_SPLICE	YES	68	36	0.15	0.25	0.0648	0.0907	{Klijn_CCL:Breast=1},TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1	MDAMB175VII_BREAST	0.15	0.25	0.1555	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	5	6	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	7520	0	0	1	0.0648	0.0777	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	0	1	0.1425	FALSE	43	37	8	105	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	6	1	MTND4P12	1993	chr5:134262734:-	MTATP8P1	5468	chr1:569005:+	INCL_NON_REF_SPLICE	YES	1	2	0.88	0.78	0.0777	0.013	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	0.78	0.88	0.0907	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MT-ND6--MT-TE	6	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0777	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB175VII_BREAST	1	1	0.0777	FALSE	499	1288	110	792	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	6	0	MTND4P12	1213	chr5:134263514:-	MTATP8P1	5484	chr1:569021:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0777	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	1	1	0.0777	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MT-ND4--MT-ND4L	5	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0648	0.0389	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB175VII_BREAST	1	1	0.1037	FALSE	344	821	44	306	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	4	7	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	7664	0	0	1	0.0518	0.0907	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	0	1	0.1425	FALSE	43	37	8	105	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	3	11	MT-ND5	2490	chrM:13826:+	MT-ATP8	5860	chrM:8413:+	INCL_NON_REF_SPLICE	YES	5696	0	0	1	0.0389	0.1425	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	0	1	0.1814	FALSE	43	37	8	105	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	5	3	MTND4P12	1974	chr5:134262753:-	MTATP8P1	5447	chr1:568984:+	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0648	0.0389	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	0.89	1	0.1037	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	UPK3B--PMS2P10	3	11	UPK3B	5528	chr7:76144473:+	PMS2P10	15953	chr7:74921967:-	INCL_NON_REF_SPLICE	YES	1281	6	0.01	0.7	0.0389	0.1425	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P10->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_10,chr7:74916804-74928928:-	MDAMB175VII_BREAST	0.01	0.7	0.1814	TRUE	0	15	0	1	15	TRUE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	3	10	MT-ND5	2404	chrM:13740:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	5526	0	0	1	0.0389	0.1296	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	0	1	0.1685	FALSE	43	37	8	105	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	5	2	MTND4P12	2003	chr5:134262724:-	MTATP8P1	5478	chr1:569015:+	INCL_NON_REF_SPLICE	YES	2	3	0.78	0.7	0.0648	0.0259	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	0.7	0.78	0.0907	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	NRIP1--AF127936.7	5	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	29	0	0.19	1	0.0648	0.0259	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB175VII_BREAST	0.19	1	0.0907	FALSE	125	705	46	456	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND3--MT-ATP8	5	1	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	93	5	0.06	0.55	0.0648	0.013	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	0.06	0.55	0.0778	FALSE	351	233	23	137	0	FALSE	ACH-000759
MDAMB175VII_BREAST	RNF152--RP11-879F14.1	5	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	4	0	0.6	1	0.0648	0.013	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	MDAMB175VII_BREAST	0.6	1	0.0778	FALSE	275	472	65	43	0	FALSE	ACH-000759
MDAMB175VII_BREAST	ACTN4--MT-CO1	5	0	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0648	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB175VII_BREAST	1	1	0.0648	FALSE	0	0	0	30	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	3	8	MT-ND5	2514	chrM:13850:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5838	5	0	0.69	0.0389	0.1037	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	0	0.69	0.1426	FALSE	43	37	8	105	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	5	0	MTND4P12	1281	chr5:134263446:-	MTATP8P1	5480	chr1:569017:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0648	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	1	1	0.0648	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	PCAT1--RP11-382A18.2	5	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0648	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	MDAMB175VII_BREAST	1	1	0.0648	TRUE	4	84	1	46	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MRPL48--GAB2	3	7	MRPL48	6026	chr11:73519395:+	GAB2	24299	chr11:78029265:-	ONLY_REF_SPLICE	YES	28	2	0.26	0.83	0.0389	0.0907	{Klijn_CCL:Breast=1},MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	MDAMB175VII_BREAST	0.26	0.83	0.1296	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	3	6	MT-ND5	2383	chrM:13719:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	5428	788	0	0.01	0.0389	0.0777	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	0	0.01	0.1166	FALSE	43	37	8	105	0	FALSE	ACH-000759
MDAMB175VII_BREAST	UPK3B--PMS2P10	4	2	UPK3B	2455	chr7:76141199:+	PMS2P10	12268	chr7:74928916:-	INCL_NON_REF_SPLICE	YES	1767	0	0	1	0.0518	0.0259	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P10->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_10,chr7:74916804-74928928:-	MDAMB175VII_BREAST	0	1	0.0777	FALSE	0	0	0	1	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	3	5	MT-ND5	2150	chrM:13486:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7665	41	0	0.16	0.0389	0.0648	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	0	0.16	0.1037	FALSE	43	37	8	105	0	FALSE	ACH-000759
MDAMB175VII_BREAST	CTSD--MT-ATP6	3	4	CTSD	6107	chr11:1778647:-	MT-ATP6	12853	chrM:8582:+	INCL_NON_REF_SPLICE	YES	6835	0	0	1	0.0389	0.0518	CTSD->cathepsin_D,chr11:1773982-1785222:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MDAMB175VII_BREAST	0	1	0.0907	FALSE	0	0	0	1	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB175VII_BREAST	1	1	0.0518	FALSE	344	821	44	306	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB175VII_BREAST	1	1	0.0518	FALSE	344	821	44	306	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	4	0	MT-ND5	1628	chrM:12964:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	1	1	0.0518	FALSE	42	36	7	104	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB175VII_BREAST	1	1	0.0518	FALSE	499	1288	110	792	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MUC5B--MT-ATP6	4	0	MUC5B	17064	chr11:1262552:+	MT-ATP6	40762	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	0	MUC5B->chr11:1244296-1283406:+,mucin_5B,_oligomeric_mucus/gel-forming,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MDAMB175VII_BREAST	1	1	0.0518	FALSE	0	0	0	1	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MUC5B--MT-ATP6	3	4	MUC5B	26861	chr11:1272349:+	MT-ATP6	40749	chrM:8468:+	INCL_NON_REF_SPLICE	YES	491	0	0.01	1	0.0389	0.0518	MUC5B->chr11:1244296-1283406:+,mucin_5B,_oligomeric_mucus/gel-forming,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MDAMB175VII_BREAST	0.01	1	0.0907	FALSE	0	0	0	2	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	3	2	MT-ND5	1701	chrM:13037:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	NO	6327	474	0	0.01	0.0389	0.0259	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	0	0.01	0.0648	FALSE	42	36	7	104	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	3	2	MT-ND5	1846	chrM:13182:+	MT-ATP8	5879	chrM:8432:+	INCL_NON_REF_SPLICE	YES	6663	0	0	1	0.0389	0.0259	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	0	1	0.0648	FALSE	43	37	8	105	0	FALSE	ACH-000759
MDAMB175VII_BREAST	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0389	0.0259	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB175VII_BREAST	0.71	1	0.0648	FALSE	515	4851	409	746	0	FALSE	ACH-000759
MDAMB175VII_BREAST	LAMP1--MT-CO2	3	1	LAMP1	10039	chr13:113976667:+	MT-CO2	14579	chrM:7805:+	INCL_NON_REF_SPLICE	YES	559	15813	0.01	0	0.0389	0.013	LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MDAMB175VII_BREAST	0	0.01	0.0519	FALSE	0	0	0	6	0	FALSE	ACH-000759
MDAMB175VII_BREAST	LY6E--MT-ND4L	3	1	LY6E	4813	chr8:144103353:+	MT-ND4L	9711	chrM:10471:+	INCL_NON_REF_SPLICE	YES	3065	0	0	1	0.0389	0.013	LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB175VII_BREAST	0	1	0.0519	FALSE	0	0	0	1	0	FALSE	ACH-000759
MDAMB175VII_BREAST	RP11-123O10.4--GRIP1	3	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0389	0.013	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MDAMB175VII_BREAST	1	1	0.0519	FALSE	93	270	15	244	0	FALSE	ACH-000759
MDAMB175VII_BREAST	ARHGDIA--MT-CO3	3	0	ARHGDIA	3695	chr17:79826588:-	MT-CO3	7748	chrM:9268:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MDAMB175VII_BREAST	1	1	0.0389	FALSE	0	0	0	6	0	FALSE	ACH-000759
MDAMB175VII_BREAST	LGALS3BP--KRT18	3	0	LGALS3BP	4113	chr17:76972107:-	KRT18	11877	chr12:53342918:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,KRT18->chr12:53342655-53346685:+,keratin_18	MDAMB175VII_BREAST	1	1	0.0389	TRUE	0	0	0	9	0	TRUE	ACH-000759
MDAMB175VII_BREAST	LY6E--MT-ND4L	3	0	LY6E	4492	chr8:144103032:+	MT-ND4L	9711	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB175VII_BREAST	1	1	0.0389	FALSE	0	0	0	1	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-CO2--MT-ND2	3	0	MT-CO2	1282	chrM:7867:+	MT-ND2	5524	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MDAMB175VII_BREAST	1	1	0.0389	FALSE	105	46	5	21	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND3--MT-ATP8	3	0	MT-ND3	1055	chrM:10113:+	MT-ATP8	4411	chrM:8430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	1	1	0.0389	FALSE	351	233	23	137	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB175VII_BREAST	1	1	0.0389	FALSE	344	821	44	306	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	3	0	MT-ND5	1635	chrM:12971:+	MT-ATP8	5887	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	1	1	0.0389	FALSE	42	36	7	104	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	3	0	MT-ND5	1648	chrM:12984:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	1	1	0.0389	FALSE	42	36	7	104	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	3	0	MT-ND5	1239	chrM:12575:+	MT-ATP8	5904	chrM:8457:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	1	1	0.0389	FALSE	41	30	6	102	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND5--MT-ATP8	3	0	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB175VII_BREAST	1	1	0.0389	FALSE	41	30	6	102	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB175VII_BREAST	1	1	0.0389	FALSE	499	1288	110	792	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB175VII_BREAST	1	1	0.0389	FALSE	499	1288	110	792	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	3	0	MTND4P12	1773	chr5:134262954:-	MTATP8P1	5480	chr1:569017:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	1	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MTND4P12--MTATP8P1	3	0	MTND4P12	1467	chr5:134263260:-	MTATP8P1	5484	chr1:569021:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1	MDAMB175VII_BREAST	1	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	44	0	0.12	1	0.0259	0.0518	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB175VII_BREAST	0.12	1	0.0777	FALSE	164	806	69	479	0	FALSE	ACH-000759
MDAMB175VII_BREAST	TIMM23--RP11-464F9.1	3	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	26959	chr10:75454562:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0389	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MDAMB175VII_BREAST	1	1	0.0389	TRUE	1	3	0	8	0	FALSE	ACH-000759
MDAMB175VII_BREAST	UPK3B--PMS2P10	2	4	UPK3B	4448	chr7:76143393:+	PMS2P10	15953	chr7:74921967:-	ONLY_REF_SPLICE	YES	1619	6	0	0.5	0.0259	0.0518	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P10->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_10,chr7:74916804-74928928:-	MDAMB175VII_BREAST	0	0.5	0.0777	FALSE	0	13	0	1	11	FALSE	ACH-000759
MDAMB175VII_BREAST	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.67	1	0.0259	0.0259	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB175VII_BREAST	0.67	1	0.0518	FALSE	407	2205	196	549	0	FALSE	ACH-000759
MDAMB175VII_BREAST	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0259	0.0259	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB175VII_BREAST	1	1	0.0518	FALSE	467	2173	244	435	0	FALSE	ACH-000759
MDAMB175VII_BREAST	MRPL48--GAB2	1	5	MRPL48	4983	chr11:73516124:+	GAB2	24299	chr11:78029265:-	ONLY_REF_SPLICE	YES	35	2	0.15	0.75	0.013	0.0648	{Klijn_CCL:Breast=1},MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	MDAMB175VII_BREAST	0.15	0.75	0.0778	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	RP3-510D11.1--YWHAE	2	0	RP3-510D11.1	3450	chr1:9242066:-	YWHAE	10030	chr17:1268352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	RP3-510D11.1->chr1:9242066-9262678:-,YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon	MDAMB175VII_BREAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	WWOX--VAT1L	2	0	WWOX	10605	chr16:78198186:+	VAT1L	36619	chr16:77896645:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	MDAMB175VII_BREAST	1	1	0.0259	TRUE	0	0	0	2	0	TRUE	ACH-000759
MDAMB175VII_BREAST	MRPL48--GAB2	1	3	MRPL48	1677	chr11:73499037:+	GAB2	22090	chr11:78075149:-	ONLY_REF_SPLICE	YES	6	1	0.4	0.8	0.013	0.0389	{Klijn_CCL:Breast=1},MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	MDAMB175VII_BREAST	0.4	0.8	0.0519	TRUE	0	0	0	1	0	TRUE	ACH-000759
MDAMB175VII_BREAST	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.013	0.0259	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB175VII_BREAST	0.6	1	0.0389	FALSE	275	511	55	178	0	FALSE	ACH-000759
MDAMB175VII_BREAST	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	24014	chr7:872142:+	ONLY_REF_SPLICE	NO	76	0	0.03	1	0.013	0.013	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	MDAMB175VII_BREAST	0.03	1	0.026	TRUE	0	1	0	6	0	FALSE	ACH-000759
MDAMB175VII_BREAST	CNN2--PPP1R12C	1	1	CNN2	4331	chr19:1032695:+	PPP1R12C	21239	chr19:55607703:-	ONLY_REF_SPLICE	YES	385	71	0.01	0.03	0.013	0.013	GTEx&tcga_normals:21/3694=0.57%,GTEx:0.19%,GTEx_FI:{Blood_Vessel=[count:54=pct:14.6],Esophagus=[count:40=pct:9.9],Colon=[count:27=pct:14.1],Stomach=[count:6=pct:6.7],Skin=[count:4=pct:1.3],Breast=[count:4=pct:3.6],Prostate=[count:3=pct:4.9],Spleen=[count:3=pct:2.7],Small_Intestine=[count:2=pct:3.6],Fallopian_Tube=[count:1=pct:16.7],Thyroid=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},GTEx_v2:{count=203;pct=2.35%;dist=Esophagus_-_Muscularis=42,Artery_-_Tibial=39,Colon_-_Sigmoid=21,Esophagus_-_Gastroesophageal_Junction=17,Artery_-_Aorta=13,Artery_-_Coronary=12,Colon_-_Transverse=9,Cells_-_Transformed_fibroblasts=7,Stomach=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Adipose_-_Subcutaneous=6,Breast_-_Mammary_Tissue=4,Nerve_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=2,Thyroid=2,Uterus=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Ovary=1,Pancreas=1,Lung=1,Vagina=1,Prostate=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Spleen=1,Bladder=1},CNN2->calponin_2,chr19:1026298-1039068:+,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	MDAMB175VII_BREAST	0.01	0.03	0.026	FALSE	98	3	5	3	0	FALSE	ACH-000759
786O_KIDNEY	MICAL2--PARVA	230	254	MICAL2	44515	chr11:12281444:+	PARVA	61348	chr11:12518005:+	ONLY_REF_SPLICE	YES	432	226	0.53	0.68	2.9871	3.2988	{Klijn_CCL:Kidney=1},MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2,PARVA->chr11:12398732-12552348:+,parvin_alpha	786O_KIDNEY	0.53	0.68	6.2859	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	PALLD--VMP1	95	113	PALLD	19548	chr4:169633074:+	VMP1	56575	chr17:57915656:+	ONLY_REF_SPLICE	YES	28	638	0.88	0.25	1.2338	1.4676	{Klijn_CCL:Kidney=1},PALLD->chr4:169418217-169849608:+,palladin,_cytoskeletal_associated_protein,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	786O_KIDNEY	0.25	0.88	2.7014	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	SAV1--MAP4K5	90	90	SAV1	3391	chr14:51131897:-	MAP4K5	19274	chr14:50952912:-	ONLY_REF_SPLICE	YES	51	0	0.78	1	1.1689	1.1689	NEIGHBORS[70932],SAV1->Oncogene{Bushman},chr14:51098776-51135049:-,salvador_family_WW_domain_containing_protein_1,MAP4K5->chr14:50885219-51027844:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_5	786O_KIDNEY	0.78	1	2.3378	FALSE	0	0	0	1	0	FALSE	ACH-000649
786O_KIDNEY	TIMM23B--LINC00843	69	50	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.96	0.8961	0.6494	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	786O_KIDNEY	0.96	1	1.5455	TRUE	508	994	45	981	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND6--MT-TE	58	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.7533	0.013	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	786O_KIDNEY	0.98	1	0.7663	FALSE	499	1288	110	792	0	FALSE	ACH-000649
786O_KIDNEY	TIMM23--RP11-464F9.1	46	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	807	8	0.06	0.87	0.5974	0.0779	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	786O_KIDNEY	0.06	0.87	0.6753	TRUE	519	3926	326	965	0	FALSE	ACH-000649
786O_KIDNEY	NAA25--RP11-956E11.1	31	39	NAA25	3594	chr12:112530855:-	RP11-956E11.1	36862	chr12:69853297:+	ONLY_REF_SPLICE	YES	102	1	0.41	0.99	0.4026	0.5065	NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,RP11-956E11.1->chr12:69843250-69854504:+	786O_KIDNEY	0.41	0.99	0.9091	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	MT-ND6--MT-TE	37	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4805	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	786O_KIDNEY	1	1	0.4805	FALSE	499	1288	110	792	0	FALSE	ACH-000649
786O_KIDNEY	C15orf57--CBX3	23	23	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	69	35	0.4	0.57	0.2987	0.2987	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	786O_KIDNEY	0.4	0.57	0.5974	TRUE	267	562	48	632	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND6--MT-TE	24	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3117	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	786O_KIDNEY	1	1	0.3117	FALSE	499	1288	110	792	0	FALSE	ACH-000649
786O_KIDNEY	MT-TA--MT-TC	23	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2987	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	786O_KIDNEY	1	1	0.2987	FALSE	462	80	0	856	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND6--MT-TE	22	2	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2857	0.026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	786O_KIDNEY	0.96	1	0.3117	FALSE	499	1288	110	792	0	FALSE	ACH-000649
786O_KIDNEY	NAA25--RP11-956E11.1	9	40	NAA25	3594	chr12:112530855:-	RP11-956E11.1	35784	chr12:69843391:+	INCL_NON_REF_SPLICE	YES	102	0	0.32	1	0.1169	0.5195	NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,RP11-956E11.1->chr12:69843250-69854504:+	786O_KIDNEY	0.32	1	0.6364	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	MT-ND4--MT-ND4L	14	14	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.1818	0.1818	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	786O_KIDNEY	0.93	1	0.3636	FALSE	344	821	44	306	0	FALSE	ACH-000649
786O_KIDNEY	ZNF654--HMGB2	15	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1948	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	786O_KIDNEY	1	1	0.1948	TRUE	0	0	0	518	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND4--MT-ND4L	13	7	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	16226	0	0	1	0.1688	0.0909	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	786O_KIDNEY	0	1	0.2597	FALSE	328	800	43	304	0	FALSE	ACH-000649
786O_KIDNEY	FRS2--HECTD4	11	14	FRS2	6634	chr12:69925836:+	HECTD4	67962	chr12:112657293:-	ONLY_REF_SPLICE	YES	39	11	0.39	0.69	0.1429	0.1818	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-	786O_KIDNEY	0.39	0.69	0.3247	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	FRS2--HECTD4	8	17	FRS2	7702	chr12:69931763:+	HECTD4	67962	chr12:112657293:-	ONLY_REF_SPLICE	YES	42	11	0.37	0.69	0.1039	0.2208	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-	786O_KIDNEY	0.37	0.69	0.3247	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	MAF--RP11-679B19.2	10	9	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1299	0.1169	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	786O_KIDNEY	1	1	0.2468	TRUE	48	25	3	38	0	FALSE	ACH-000649
786O_KIDNEY	NAA25--RP11-956E11.1	12	0	NAA25	1307	chr12:112546520:-	RP11-956E11.1	36862	chr12:69853297:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1558	0	NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,RP11-956E11.1->chr12:69843250-69854504:+	786O_KIDNEY	1	1	0.1558	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	C15orf57--CBX3	8	13	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	68	35	0.24	0.38	0.1039	0.1688	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	786O_KIDNEY	0.24	0.38	0.2727	TRUE	267	562	48	632	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND4--MT-ND4L	5	24	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	12	0	0.71	1	0.0649	0.3117	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	786O_KIDNEY	0.71	1	0.3766	FALSE	344	826	44	306	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND4--MT-ND4L	10	1	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	61	0	0.15	1	0.1299	0.013	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	786O_KIDNEY	0.15	1	0.1429	FALSE	344	827	44	306	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND4--MT-ND4L	5	19	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.0649	0.2468	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	786O_KIDNEY	0.89	1	0.3117	FALSE	344	826	44	306	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND6--MT-TE	9	1	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.1169	0.013	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	786O_KIDNEY	0.83	1	0.1299	FALSE	499	1288	110	792	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND4--MT-ND4L	3	24	MT-ND4	1180	chrM:10939:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	NO	22	0	0.55	1	0.039	0.3117	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	786O_KIDNEY	0.55	1	0.3507	FALSE	344	826	44	306	0	FALSE	ACH-000649
786O_KIDNEY	TRAPPC10--AGPAT3	6	11	TRAPPC10	3460	chr21:45457808:+	AGPAT3	57821	chr21:45397927:+	ONLY_REF_SPLICE	YES	129	306	0.12	0.05	0.0779	0.1429	LOCAL_REARRANGEMENT:+:[25783],TRAPPC10->chr21:45432200-45526433:+,trafficking_protein_particle_complex_10,AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+	786O_KIDNEY	0.05	0.12	0.2208	TRUE	0	0	0	1	0	FALSE	ACH-000649
786O_KIDNEY	MT-CO3--MT-ATP6	8	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1039	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	786O_KIDNEY	1	1	0.1039	FALSE	189	492	56	216	0	FALSE	ACH-000649
786O_KIDNEY	RP11-96H19.1--RP11-446N19.1	5	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	2	0.89	0.89	0.0649	0.1429	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	786O_KIDNEY	0.89	0.89	0.2078	FALSE	515	4851	409	746	0	FALSE	ACH-000649
786O_KIDNEY	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0909	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	786O_KIDNEY	1	1	0.0909	FALSE	292	1546	117	613	0	FALSE	ACH-000649
786O_KIDNEY	C15orf57--CBX3	3	14	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	68	35	0.2	0.33	0.039	0.1818	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	786O_KIDNEY	0.2	0.33	0.2208	TRUE	267	562	48	632	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND4--MT-ND4L	6	1	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	21	0	0.25	1	0.0779	0.013	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	786O_KIDNEY	0.25	1	0.0909	FALSE	344	826	44	306	0	FALSE	ACH-000649
786O_KIDNEY	MT-CO3--MT-ATP6	6	0	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0779	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	786O_KIDNEY	1	1	0.0779	FALSE	189	492	56	216	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0779	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	786O_KIDNEY	1	1	0.0779	FALSE	499	1288	110	792	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND4--MT-ND4L	4	6	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	934	0	0.01	1	0.0519	0.0779	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	786O_KIDNEY	0.01	1	0.1298	FALSE	344	827	44	306	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND6--MT-TE	5	2	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.0649	0.026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	786O_KIDNEY	0.7	1	0.0909	FALSE	499	1288	110	792	0	FALSE	ACH-000649
786O_KIDNEY	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	786O_KIDNEY	1	1	0.0649	FALSE	462	80	0	856	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND6--MT-TE	4	2	MT-ND6	1199	chrM:14475:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0519	0.026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	786O_KIDNEY	0.75	1	0.0779	FALSE	499	1288	110	792	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND4--MT-ND4L	3	5	MT-ND4	1276	chrM:11035:+	MT-ND4L	5657	chrM:10748:+	INCL_NON_REF_SPLICE	YES	50	0	0.14	1	0.039	0.0649	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	786O_KIDNEY	0.14	1	0.1039	FALSE	344	827	44	306	0	FALSE	ACH-000649
786O_KIDNEY	MT-CO3--MT-ATP6	4	0	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	786O_KIDNEY	1	1	0.0519	FALSE	189	492	56	216	0	FALSE	ACH-000649
786O_KIDNEY	MT-CO3--MT-ATP6	4	0	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	786O_KIDNEY	1	1	0.0519	FALSE	189	492	56	216	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND4--MT-ND4L	3	4	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12	0	0.37	1	0.039	0.0519	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	786O_KIDNEY	0.37	1	0.0909	FALSE	344	826	44	306	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND6--MT-TE	4	0	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	786O_KIDNEY	1	1	0.0519	FALSE	499	1288	110	792	0	FALSE	ACH-000649
786O_KIDNEY	RP11-96H19.1--RP11-446N19.1	1	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.87	0.013	0.1558	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	786O_KIDNEY	0.87	1	0.1688	FALSE	467	2173	244	435	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND6--MT-TE	3	3	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.67	1	0.039	0.039	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	786O_KIDNEY	0.67	1	0.078	FALSE	499	1288	110	792	0	FALSE	ACH-000649
786O_KIDNEY	RP11-120D5.1--MID1	3	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	41	0.75	0.13	0.039	0.039	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	786O_KIDNEY	0.13	0.75	0.078	FALSE	16	356	14	466	0	FALSE	ACH-000649
786O_KIDNEY	RP11-96H19.1--RP11-446N19.1	1	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.013	0.1429	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	786O_KIDNEY	0.86	1	0.1559	FALSE	407	2205	196	549	0	FALSE	ACH-000649
786O_KIDNEY	TRAPPC10--AGPAT3	2	7	TRAPPC10	3460	chr21:45457808:+	AGPAT3	58897	chr21:45400870:+	ONLY_REF_SPLICE	YES	129	342	0.07	0.03	0.026	0.0909	LOCAL_REARRANGEMENT:+:[25783],TRAPPC10->chr21:45432200-45526433:+,trafficking_protein_particle_complex_10,AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+	786O_KIDNEY	0.03	0.07	0.1169	TRUE	0	0	0	1	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND6--MT-TE	3	2	MT-ND6	1333	chrM:14341:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.039	0.026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	786O_KIDNEY	0.71	1	0.065	FALSE	499	1288	110	792	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND4--MT-ND4L	3	1	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0.013	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	786O_KIDNEY	1	1	0.052	FALSE	344	821	44	306	0	FALSE	ACH-000649
786O_KIDNEY	MT-CO3--MT-ATP6	3	0	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	786O_KIDNEY	1	1	0.039	FALSE	189	492	56	216	0	FALSE	ACH-000649
786O_KIDNEY	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	786O_KIDNEY	1	1	0.039	FALSE	189	492	56	216	0	FALSE	ACH-000649
786O_KIDNEY	MT-CO3--MT-ATP6	3	0	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	786O_KIDNEY	1	1	0.039	FALSE	189	492	56	216	0	FALSE	ACH-000649
786O_KIDNEY	MT-CO3--MT-ATP6	3	0	MT-CO3	1162	chrM:9368:+	MT-ATP6	5445	chrM:9187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	786O_KIDNEY	1	1	0.039	FALSE	189	492	56	216	0	FALSE	ACH-000649
786O_KIDNEY	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	786O_KIDNEY	1	1	0.039	FALSE	189	492	56	216	0	FALSE	ACH-000649
786O_KIDNEY	MT-CO3--MT-ATP6	3	0	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	786O_KIDNEY	1	1	0.039	FALSE	189	492	56	216	0	FALSE	ACH-000649
786O_KIDNEY	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	786O_KIDNEY	1	1	0.039	FALSE	189	492	56	216	0	FALSE	ACH-000649
786O_KIDNEY	MT-CO3--MT-ATP6	3	0	MT-CO3	1038	chrM:9244:+	MT-ATP6	5225	chrM:8967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	786O_KIDNEY	1	1	0.039	FALSE	189	492	56	216	0	FALSE	ACH-000649
786O_KIDNEY	MT-CO3--MT-ATP6	3	0	MT-CO3	1396	chrM:9602:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	786O_KIDNEY	1	1	0.039	FALSE	189	492	56	216	0	FALSE	ACH-000649
786O_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	786O_KIDNEY	1	1	0.039	FALSE	499	1288	110	792	0	FALSE	ACH-000649
786O_KIDNEY	MYH9--PLCB1	3	0	MYH9	31547	chr22:36689867:-	PLCB1	84031	chr20:8862258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	786O_KIDNEY	1	1	0.039	TRUE	0	0	0	2	0	TRUE	ACH-000649
786O_KIDNEY	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	37	0	0.07	1	0.026	0.013	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	786O_KIDNEY	0.07	1	0.039	FALSE	164	806	69	479	0	FALSE	ACH-000649
786O_KIDNEY	CSNK2A1--CHST3	2	0	CSNK2A1	1150	chr20:524316:-	CHST3	26280	chr10:73765494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-,CHST3->carbohydrate_(chondroitin_6)_sulfotransferase_3,chr10:73724123-73773322:+	786O_KIDNEY	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	MET--GNAS	2	0	MET	1188	chr7:116312631:+	GNAS	46166	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	786O_KIDNEY	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	SGMS1--C9orf3	2	0	SGMS1	2457	chr10:52383467:-	C9orf3	60629	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	SGMS1->Oncogene{Bushman},chr10:52065360-52384923:-,sphingomyelin_synthase_1,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	786O_KIDNEY	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	ST3GAL4--FBXO4	2	0	ST3GAL4	12088	chr11:126279306:+	FBXO4	19735	chr5:41927115:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	ST3GAL4->ST3_beta-galactoside_alpha-2,3-sialyltransferase_4,chr11:126225535-126310239:+,FBXO4->F-box_protein_4,chr5:41925356-41941845:+	786O_KIDNEY	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	UNKL--UBE2I	2	0	UNKL	20367	chr16:1428915:-	UBE2I	39740	chr16:1364021:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_INVERSION:-:+:[36187],UNKL->chr16:1413206-1464752:-,unkempt_family_like_zinc_finger,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	786O_KIDNEY	1	1	0.026	TRUE	0	0	0	2	0	TRUE	ACH-000649
786O_KIDNEY	ZFP28--MAN2B2	2	0	ZFP28	7069	chr19:57061974:+	MAN2B2	35866	chr4:6621654:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	ZFP28->ZFP28_zinc_finger_protein,chr19:57050317-57068169:+,MAN2B2->chr4:6576902-6625089:+,mannosidase_alpha_class_2B_member_2	786O_KIDNEY	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	RP6-206I17.1--SEC22B	1	2	RP6-206I17.1	3178	chr1:143743240:-	SEC22B	15471	chr1:145109524:+	ONLY_REF_SPLICE	NO	0	634	1	0	0.013	0.026	GTEx_FI:{Esophagus=[count:4=pct:1.0],Brain=[count:3=pct:0.5],Blood_Vessel=[count:3=pct:0.8],Pancreas=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},RP6-206I17.1->chr1:143647638-143745417:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	786O_KIDNEY	0	1	0.039	FALSE	10	13	0	2	0	FALSE	ACH-000649
786O_KIDNEY	CHCHD3--EXOC4	1	1	CHCHD3	7933	chr7:132659929:-	EXOC4	32133	chr7:133160082:+	ONLY_REF_SPLICE	YES	750	194	0	0.01	0.013	0.013	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	786O_KIDNEY	0	0.01	0.026	FALSE	0	0	0	4	0	FALSE	ACH-000649
786O_KIDNEY	NAA25--FRS2	1	1	NAA25	1307	chr12:112546520:-	FRS2	40138	chr12:69924645:+	ONLY_REF_SPLICE	YES	6	39	0.25	0.05	0.013	0.013	NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2	786O_KIDNEY	0.05	0.25	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000649
786O_KIDNEY	POLH--MRPL14	1	1	POLH	1291	chr6:43544177:+	MRPL14	18446	chr6:44084366:-	ONLY_REF_SPLICE	YES	109	140	0.02	0.01	0.013	0.013	POLH->Oncogene{Bushman},chr6:43543887-43586701:+,polymerase_(DNA)_eta,MRPL14->chr6:44081194-44095194:-,mitochondrial_ribosomal_protein_L14	786O_KIDNEY	0.01	0.02	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000649
786O_KIDNEY	SPECC1--USP22	1	1	SPECC1	30655	chr17:20209395:+	USP22	42339	chr17:20931987:-	ONLY_REF_SPLICE	YES	84	136	0.02	0.01	0.013	0.013	SPECC1->Oncogene{Bushman},chr17:19912657-20222339:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1,USP22->chr17:20902910-20947073:-,ubiquitin_specific_peptidase_22	786O_KIDNEY	0.01	0.02	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000649
786O_KIDNEY	TAF4--PSMA7	1	1	TAF4	17661	chr20:60572606:-	PSMA7	30022	chr20:60716000:-	ONLY_REF_SPLICE	YES	77	2109	0.03	0	0.013	0.013	GTEx_FI:{Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Liver=1,Muscle_-_Skeletal=1},{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[70925],TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	786O_KIDNEY	0	0.03	0.026	FALSE	1	3	0	4	0	FALSE	ACH-000649
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	138	63	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6758	0.765	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.4408	TRUE	508	994	45	981	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	85	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	302	4	0.23	0.96	1.0322	0.0486	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.96	1.0808	TRUE	519	3926	326	965	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	75	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9107	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9107	TRUE	0	0	0	518	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	52	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	177	1	0.26	0.6314	0.1214	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.7528	TRUE	465	1949	224	605	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD97--NOL6	47	22	CD97	9444	chr19:14512572:+	NOL6	23978	chr9:33468420:-	ONLY_REF_SPLICE	YES	55	81	0.56	0.46	0.5707	0.2672	CD97->Oncogene{Bushman},chr19:14491313-14519537:+,NOL6->chr9:33461439-33473928:-,nucleolar_protein_6	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.56	0.8379	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MYL6	42	0	CALM3	4231	chr19:47109114:+	MYL6	12975	chr12:56553371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.51	0	HGNC_GENEFAM,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.51	TRUE	0	0	0	8	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	39	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4736	0.0243	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4979	FALSE	462	80	0	856	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	30	19	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	34	1	0.59	0.3643	0.2307	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.595	TRUE	458	1351	185	561	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	25	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	12352	4	0	0.87	0.3036	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.87	0.3279	FALSE	230	193	14	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	22	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12468	7	0	0.77	0.2672	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.77	0.2915	FALSE	230	198	14	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ND4L	16	14	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2956	0	0.01	1	0.1943	0.17	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.3643	FALSE	1	1	0	107	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PFKL--MT-ND4L	13	23	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	3231	0	0.01	1	0.1579	0.2793	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.4372	FALSE	0	0	0	33	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	37	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.085	0.4493	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.5343	FALSE	209	205	15	279	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	53	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	189	0	0.23	1	0.0364	0.6436	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.68	FALSE	344	827	44	306	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	15	4	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15134	7	0	0.73	0.1821	0.0486	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.73	0.2307	FALSE	231	205	14	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	6	40	MT-ND5	2813	chrM:14149:+	MT-ND4	5957	chrM:10904:+	INCL_NON_REF_SPLICE	YES	0	3476	1	0.01	0.0729	0.4857	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.5586	FALSE	29	25	1	23	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	47	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	29	0	0.64	1	0.0486	0.5707	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.6193	FALSE	344	826	44	306	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-RNR2	7	33	MT-CO1	1653	chrM:6556:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	NO	25333	0	0	1	0.085	0.4007	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.4857	FALSE	44	51	6	21	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	10	21	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1152	0	0.03	1	0.1214	0.255	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.3764	FALSE	344	827	44	306	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	43	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	8	1	0.85	0.98	0.0486	0.5222	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.98	0.5708	FALSE	344	821	44	306	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-RNR2	10	14	MT-CO1	1603	chrM:6506:+	MT-RNR2	5550	chrM:1678:+	INCL_NON_REF_SPLICE	YES	21324	0	0	1	0.1214	0.17	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2914	FALSE	44	51	6	21	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	4	37	MT-ND5	2705	chrM:14041:+	MT-ND4	5940	chrM:10887:+	INCL_NON_REF_SPLICE	YES	156	2209	0.21	0.02	0.0486	0.4493	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.21	0.4979	FALSE	29	25	1	23	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	10	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	108	45	0.17	0.33	0.1214	0.1457	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.33	0.2671	TRUE	267	562	48	632	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	12	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	87	7	0.14	0.67	0.1457	0.0243	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.67	0.17	FALSE	59	21	0	114	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-RNR2	11	6	MT-CO2	1240	chrM:7825:+	MT-RNR2	4704	chrM:1690:+	INCL_NON_REF_SPLICE	YES	60	0	0.22	1	0.1336	0.0729	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.2065	FALSE	24	6	1	8	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	12	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	11785	25023	0	0	0.1457	0.0121	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1578	FALSE	183	104	9	328	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-RNR2	3	37	MT-CO1	2212	chrM:7115:+	MT-RNR2	5579	chrM:1707:+	INCL_NON_REF_SPLICE	YES	16866	0	0	1	0.0364	0.4493	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.4857	FALSE	44	51	6	21	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	37	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	24	0	0.62	1	0.0364	0.4493	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.4857	FALSE	213	207	15	279	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	21	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17030	0	0	1	0.085	0.255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.34	FALSE	231	217	16	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	4	32	MT-ND5	2667	chrM:14003:+	MT-ND4	6019	chrM:10966:+	INCL_NON_REF_SPLICE	YES	1416	8430	0.02	0	0.0486	0.3886	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.4372	FALSE	29	25	1	23	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-RNR2	3	34	MT-CO1	1965	chrM:6868:+	MT-RNR2	5605	chrM:1733:+	INCL_NON_REF_SPLICE	YES	24147	0	0	1	0.0364	0.4129	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.4493	FALSE	44	51	6	21	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-RNR2	4	30	MT-CO1	1642	chrM:6545:+	MT-RNR2	5587	chrM:1715:+	INCL_NON_REF_SPLICE	YES	24348	0	0	1	0.0486	0.3643	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.4129	FALSE	44	51	6	21	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-RNR2	3	34	MT-CO1	1917	chrM:6820:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	25057	0	0	1	0.0364	0.4129	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.4493	FALSE	44	51	6	21	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	18	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17163	73	0	0.26	0.085	0.2186	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.26	0.3036	FALSE	231	217	16	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	24	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15209	73	0	0.28	0.0607	0.2914	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.28	0.3521	FALSE	231	217	16	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	8	12	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19191	0	0	1	0.0971	0.1457	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2428	FALSE	231	217	16	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-RNR2	7	15	MT-CO1	1642	chrM:6545:+	MT-RNR2	6082	chrM:2210:+	INCL_NON_REF_SPLICE	YES	24348	15552	0	0	0.085	0.1821	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.2671	FALSE	44	51	6	21	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	23	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	17145	0	0	1	0.0607	0.2793	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.34	FALSE	231	217	16	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	10	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1214	0.0243	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1457	FALSE	462	80	0	856	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	21	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	16205	0	0	1	0.0607	0.255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3157	FALSE	231	217	16	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1214	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1214	TRUE	0	0	0	434	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	15	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	17773	7	0	0.75	0.0729	0.1821	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.75	0.255	FALSE	231	217	16	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	27	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	12274	0	0	1	0.0364	0.3279	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3643	FALSE	328	800	43	304	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	7	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	110	45	0.13	0.27	0.085	0.1214	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.27	0.2064	TRUE	267	562	48	632	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-RNR2	6	14	MT-CO1	1546	chrM:6449:+	MT-RNR2	5566	chrM:1694:+	INCL_NON_REF_SPLICE	YES	22538	0	0	1	0.0729	0.17	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2429	FALSE	44	51	6	21	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	18	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	17753	0	0	1	0.0607	0.2186	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2793	FALSE	231	217	16	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	18	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0607	0.2186	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.2793	FALSE	344	821	44	306	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	17	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	17570	0	0	1	0.0607	0.2064	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2671	FALSE	231	217	16	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	21	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10761	0	0	1	0.0486	0.255	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3036	FALSE	344	827	44	306	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-RNR2	4	20	MT-CO1	1625	chrM:6528:+	MT-RNR2	5573	chrM:1701:+	INCL_NON_REF_SPLICE	NO	22704	0	0	1	0.0486	0.2429	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2915	FALSE	44	51	6	21	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-RNR2	4	18	MT-CO1	1617	chrM:6520:+	MT-RNR2	5563	chrM:1691:+	INCL_NON_REF_SPLICE	YES	21570	0	0	1	0.0486	0.2186	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2672	FALSE	44	51	6	21	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-RNR2	3	22	MT-CO1	1635	chrM:6538:+	MT-RNR2	5554	chrM:1682:+	INCL_NON_REF_SPLICE	YES	23895	0	0	1	0.0364	0.2672	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3036	FALSE	44	51	6	21	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-RNR2	3	22	MT-CO2	1381	chrM:7966:+	MT-RNR2	4713	chrM:1699:+	INCL_NON_REF_SPLICE	YES	18	0	0.58	1	0.0364	0.2672	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	1	0.3036	FALSE	24	6	1	8	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	18	MT-ND4	1824	chrM:11583:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17179	7	0	0.76	0.0486	0.2186	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.76	0.2672	FALSE	231	217	16	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	9	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	20725	531	0	0.03	0.0729	0.1093	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.1822	FALSE	231	217	16	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	3	21	MT-ND5	2217	chrM:13553:+	MT-ND4	6022	chrM:10969:+	INCL_NON_REF_SPLICE	YES	2872	8534	0.01	0	0.0364	0.255	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.2914	FALSE	31	27	1	23	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-RNR2	6	8	MT-CO2	1320	chrM:7905:+	MT-RNR2	5267	chrM:2253:+	INCL_NON_REF_SPLICE	YES	30	15575	0.32	0	0.0729	0.0971	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.32	0.17	FALSE	24	6	1	8	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	16	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17551	0	0	1	0.0486	0.1943	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2429	FALSE	231	217	16	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	8	0	MT-ND5	2730	chrM:14066:+	MT-ND4	7048	chrM:11995:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0971	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0971	FALSE	45	27	1	23	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	7	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	18662	1533	0	0.01	0.0729	0.085	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1579	FALSE	231	205	14	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FTH1--ACTB	7	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	1263	3	0.01	0.73	0.085	0.0121	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.73	0.0971	FALSE	1	0	0	97	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	7	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11895	24618	0	0	0.085	0.0121	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0971	FALSE	183	104	9	328	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	7	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.73	1	0.085	0.0121	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	0.0971	FALSE	292	1546	117	613	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2A--MT-CO3	7	1	POLR2A	16874	chr17:7417222:+	MT-CO3	20977	chrM:9598:+	INCL_NON_REF_SPLICE	YES	470	16579	0.02	0	0.085	0.0121	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0971	FALSE	0	0	0	5	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	12	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	19186	0	0	1	0.0486	0.1457	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1943	FALSE	231	217	16	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	16	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	17490	0	0	1	0.0364	0.1943	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2307	FALSE	231	217	16	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-RNR2	4	11	MT-CO2	1347	chrM:7932:+	MT-RNR2	5287	chrM:2273:+	INCL_NON_REF_SPLICE	YES	21	15192	0.42	0	0.0486	0.1336	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.42	0.1822	FALSE	24	6	1	8	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	12468	73	0	0.1	0.0729	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.1	0.0972	FALSE	230	198	14	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	6	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	59	7	0.11	0.5	0.0729	0.0121	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.5	0.085	FALSE	59	21	0	114	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-RNR2	3	13	MT-CO2	1302	chrM:7887:+	MT-RNR2	4747	chrM:1733:+	INCL_NON_REF_SPLICE	YES	33	0	0.33	1	0.0364	0.1579	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.1943	FALSE	24	6	1	8	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	13	MT-ND4	1533	chrM:11292:+	MT-ATP8	5479	chrM:8466:+	INCL_NON_REF_SPLICE	YES	21824	4	0	0.8	0.0364	0.1579	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.8	0.1943	FALSE	231	217	16	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-RNR2	4	7	MT-CO2	1303	chrM:7888:+	MT-RNR2	5285	chrM:2271:+	INCL_NON_REF_SPLICE	YES	32	15245	0.26	0	0.0486	0.085	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.26	0.1336	FALSE	24	6	1	8	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	11	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19851	73	0	0.16	0.0364	0.1336	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.16	0.17	FALSE	231	217	16	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	3	10	MT-ND5	1673	chrM:13009:+	MT-ND4	5950	chrM:10897:+	INCL_NON_REF_SPLICE	YES	2564	2938	0.01	0	0.0364	0.1214	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1578	FALSE	28	25	0	21	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	1	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	14818	1750	0	0	0.0607	0.0121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0728	FALSE	231	205	14	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--SUMO2	5	0	MT-CO1	1592	chrM:6495:+	SUMO2	5567	chr17:73179054:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0607	FALSE	0	0	0	12	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-RNR2	4	4	MT-CO2	1267	chrM:7852:+	MT-RNR2	5224	chrM:2210:+	INCL_NON_REF_SPLICE	YES	47	15555	0.15	0	0.0486	0.0486	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.15	0.0972	FALSE	24	6	1	8	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	8	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	17163	1812	0	0.01	0.0364	0.0971	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1335	FALSE	231	217	16	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	4	3	MT-CO2	1311	chrM:7896:+	MT-ND2	5532	chrM:5317:+	INCL_NON_REF_SPLICE	YES	30	5185	0.19	0	0.0486	0.0364	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.19	0.085	FALSE	105	46	5	21	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12496	73	0	0.08	0.0486	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.0729	FALSE	230	198	14	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBA1--HBG1	4	1	HBA1	1454	chr16:227132:+	HBG1	6249	chr11:5269717:-	ONLY_REF_SPLICE	YES	5719	5956	0	0	0.0486	0.0121	GTEx&tcga_normals:1/3694=0.03%,PROTCLUST,HBA1->chr16:226679-227521:+,hemoglobin_subunit_alpha_1,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0607	FALSE	0	0	0	2	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	5	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2998	25476	0	0	0.0364	0.0607	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0971	FALSE	183	104	9	328	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	11880	24153	0	0	0.0486	0.0121	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0607	FALSE	183	104	9	328	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	4	1	MT-CO2	1240	chrM:7825:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	52	3897	0.09	0	0.0486	0.0121	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0607	FALSE	105	46	5	21	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	4	1	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	228	2	0.02	0.71	0.0486	0.0121	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.71	0.0607	FALSE	351	233	23	137	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5571	chrM:8558:+	INCL_NON_REF_SPLICE	YES	12565	657	0	0.01	0.0486	0.0121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0607	FALSE	231	204	14	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-RNR2	3	4	MT-CO2	1216	chrM:7801:+	MT-RNR2	4692	chrM:1678:+	INCL_NON_REF_SPLICE	YES	72	0	0.09	1	0.0364	0.0486	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.085	FALSE	24	6	1	8	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0486	FALSE	230	191	14	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	3	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	NO	12848	0	0	1	0.0364	0.0364	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0728	FALSE	231	204	14	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	2	CCDC26	2447	chr8:130587128:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.0364	0.0243	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.0607	TRUE	0	3	0	7	3	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	3	2	MT-ND3	1283	chrM:10341:+	MT-ATP8	4411	chrM:8430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.0243	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0607	FALSE	351	233	23	137	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	3	2	MT-ND3	1213	chrM:10271:+	MT-ATP8	4379	chrM:8398:+	INCL_NON_REF_SPLICE	YES	1174	0	0	1	0.0364	0.0243	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0607	FALSE	351	233	23	137	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	2	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	12224	7	0	0.42	0.0364	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.42	0.0607	FALSE	230	193	14	283	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYH9--RPS28	3	2	MYH9	40253	chr22:36678667:-	RPS28	44935	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	423	1	0.01	0.83	0.0364	0.0243	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.83	0.0607	FALSE	0	0	0	1	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	11760	22105	0	0	0.0364	0.0121	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0485	FALSE	183	104	9	328	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	NO	38	5	0.1	0.44	0.0364	0.0121	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.44	0.0485	FALSE	59	21	0	114	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	3	1	MT-CO2	1282	chrM:7867:+	MT-ND2	5218	chrM:5003:+	INCL_NON_REF_SPLICE	YES	38	13710	0.1	0	0.0364	0.0121	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.1	0.0485	FALSE	105	46	5	21	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0364	0.0121	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.0485	FALSE	125	705	46	456	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	1	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	4	0	0.5	1	0.0364	0.0121	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0485	FALSE	0	9	0	55	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BLOC1S1--ENO3	3	0	BLOC1S1	3013	chr12:56112917:+	ENO3	7241	chr17:4851660:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	BLOC1S1->biogenesis_of_lysosomal_organelles_complex_1_subunit_1,chr12:56109820-56113871:+,ENO3->chr17:4851387-4860426:+,enolase_3	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	3	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0364	FALSE	351	233	23	137	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0364	TRUE	0	0	0	434	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2A--MT-CO3	3	0	POLR2A	16612	chr17:7416960:+	MT-CO3	20945	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0364	FALSE	0	0	0	5	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMC3--PDCD4	3	0	SMC3	14888	chr10:112352981:+	PDCD4	30091	chr10:112640991:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	SMC3->chr10:112327449-112364394:+,structural_maintenance_of_chromosomes_3,PDCD4->Oncogene{Bushman},chr10:112631565-112659764:+,programmed_cell_death_4_(neoplastic_transformation_inhibitor)	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0364	TRUE	0	2	0	2	1	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-786C10.1--GSE1	2	3	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	YES	1	177	0.83	0.03	0.0243	0.0364	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.83	0.0607	TRUE	2	3	0	21	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ILF3--KANK3	2	3	ILF3	1227	chr19:10765163:+	KANK3	25499	chr19:8402740:-	ONLY_REF_SPLICE	YES	892	0	0.01	1	0.0243	0.0364	ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,KANK3->KN_motif_and_ankyrin_repeat_domains_3,chr19:8387468-8408146:-	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0607	FALSE	0	0	0	1	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-634B7.4--TRIM58	2	2	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	53	1	0.07	0.0243	0.0243	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0486	TRUE	158	633	76	73	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0243	0.0121	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.0364	FALSE	16	356	14	466	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ALG11--ATP7B	2	0	ALG11	1065	chr13:52586598:+	ATP7B	14220	chr13:52549304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	LOCAL_INVERSION:+:-:[904],ALG11->ALG11,_alpha-1,2-mannosyltransferase,chr13:52586534-52603800:+,ATP7B->ATPase_copper_transporting_beta,chr13:52506809-52585630:-	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	2	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATF7IP2--U2AF1	2	0	ATF7IP2	4240	chr16:10479979:+	U2AF1	36867	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	ATF7IP2->activating_transcription_factor_7_interacting_protein_2,chr16:10420291-10577495:+,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C22orf34--PARVB	2	0	C22orf34	1138	chr22:50051053:-	PARVB	28662	chr22:44489808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	C22orf34->chr22:49808176-50051190:-,chromosome_22_open_reading_frame_34,PARVB->Oncogene{Bushman},chr22:44395091-44568829:+,parvin_beta	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KDM1B--DEK	2	0	KDM1B	2698	chr6:18160213:+	DEK	35250	chr6:18237747:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_INVERSION:+:-:[15],KDM1B->chr6:18155560-18224084:+,lysine_demethylase_1B,DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KNTC1--ANAPC5	2	0	KNTC1	1106	chr12:123011898:+	ANAPC5	68366	chr12:121783834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	KNTC1->chr12:123011793-123110943:+,kinetochore_associated_1,ANAPC5->anaphase_promoting_complex_subunit_5,chr12:121746048-121837699:-	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOR1--RIMKLB	2	0	NCOR1	16332	chr17:16046920:-	RIMKLB	66999	chr12:8866407:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1,RIMKLB->chr12:8834196-8935691:+,ribosomal_modification_protein_rimK-like_family_member_B	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKAR1A--NLRC3	2	0	PRKAR1A	1363	chr17:66508283:+	NLRC3	33543	chr16:3598753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	PRKAR1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:66507921-66547460:+,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_alpha,NLRC3->NLR_family,_CARD_domain_containing_3,chr16:3589033-3627401:-	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTBP2--LRRC8D	2	0	PTBP2	1208	chr1:97187428:+	LRRC8D	32174	chr1:90309197:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,LRRC8D->chr1:90286573-90402170:+,leucine-rich_repeat_containing_8_family_member_D	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PWP2--CUL4A	2	0	PWP2	2258	chr21:45528977:+	CUL4A	31137	chr13:113891137:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	PWP2->PWP2_periodic_tryptophan_protein_homolog_(yeast),chr21:45527171-45551063:+,CUL4A->chr13:113862552-113919399:+,cullin_4A	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--HMGB1	2	0	RCC1	2175	chr1:28834672:+	HMGB1	23625	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	6	0	3	4	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEC22C--XPO6	2	0	SEC22C	9030	chr3:42610357:-	XPO6	33074	chr16:28181230:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	SEC22C->SEC22_homolog_C,_vesicle_trafficking_protein,chr3:42589461-42642572:-,XPO6->chr16:28109300-28223241:-,exportin_6	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2B--C5orf24	2	0	UBE2B	2542	chr5:133710154:+	C5orf24	15852	chr5:134190588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	UBE2B->chr5:133706870-133727683:+,ubiquitin_conjugating_enzyme_E2_B,C5orf24->chr5:134181370-134195427:+,chromosome_5_open_reading_frame_24	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR4--EPB42	2	0	WDR4	12544	chr21:44270151:-	EPB42	30303	chr15:43489662:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	WDR4->WD_repeat_domain_4,chr21:44263204-44299678:-,EPB42->chr15:43398423-43513481:-,erythrocyte_membrane_protein_band_4.2	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF527--MRPL3	2	0	ZNF527	4493	chr19:37871274:+	MRPL3	23681	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	ZNF527->chr19:37861963-37883968:+,zinc_finger_protein_527,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFX3--KIAA2026	1	3	RFX3	10703	chr9:3301546:-	KIAA2026	37533	chr9:5969436:-	ONLY_REF_SPLICE	YES	17	66	0.19	0.06	0.0121	0.0364	RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,KIAA2026->KIAA2026,chr9:5881596-6007901:-	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.19	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	2	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	9	3	0.25	0.5	0.0121	0.0243	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.5	0.0364	TRUE	0	2	0	11	2	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C11orf73--PICALM	1	1	C11orf73	3558	chr11:86017524:+	PICALM	14527	chr11:85742653:-	ONLY_REF_SPLICE	YES	212	851	0.01	0	0.0121	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1},C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0242	FALSE	1	2	0	10	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD38--BST1	1	1	CD38	1373	chr4:15780270:+	BST1	19167	chr4:15707138:+	ONLY_REF_SPLICE	YES	320	13	0.01	0.13	0.0121	0.0121	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[39962],CD38->CD38_molecule,chr4:15779898-15854853:+,BST1->bone_marrow_stromal_cell_antigen_1,chr4:15704573-15739936:+	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.13	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD38--BST1	1	1	CD38	1373	chr4:15780270:+	BST1	24031	chr4:15720530:+	ONLY_REF_SPLICE	NO	320	17	0.01	0.11	0.0121	0.0121	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[39962],CD38->CD38_molecule,chr4:15779898-15854853:+,BST1->bone_marrow_stromal_cell_antigen_1,chr4:15704573-15739936:+	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.11	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK6--FBXO7	1	1	CDK6	7628	chr7:92300740:-	FBXO7	35077	chr22:32887073:+	ONLY_REF_SPLICE	YES	175	1031	0.01	0	0.0121	0.0121	CDK6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:92234235-92465908:-,cyclin-dependent_kinase_6,FBXO7->F-box_protein_7,chr22:32870663-32894818:+	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LAPTM5--GSTO1	1	1	LAPTM5	1162	chr1:31230506:-	GSTO1	19457	chr10:106022737:+	ONLY_REF_SPLICE	NO	1635	765	0	0	0.0121	0.0121	LAPTM5->Oncogene{Bushman},chr1:31205316-31230667:-,lysosomal_protein_transmembrane_5,GSTO1->chr10:105995114-106027217:+,glutathione_S-transferase_omega_1	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PFKL--COL18A1	1	1	PFKL	12244	chr21:45738478:+	COL18A1	45822	chr21:46914776:+	ONLY_REF_SPLICE	YES	2939	639	0	0	0.0121	0.0121	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,COL18A1->chr21:46825052-46933634:+,collagen_type_XVIII_alpha_1	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP13-188A5.1--KLF8	1	1	RP13-188A5.1	1678	chrX:55935233:+	KLF8	9003	chrX:56291613:+	ONLY_REF_SPLICE	YES	2	78	0.5	0.03	0.0121	0.0121	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.5	0.0242	TRUE	1	9	1	5	7	TRUE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPN1--ACAP1	1	1	RPN1	4377	chr3:128363762:-	ACAP1	22724	chr17:7246698:+	ONLY_REF_SPLICE	YES	888	497	0	0	0.0121	0.0121	RPN1->Oncogene{Bushman},chr3:128338817-128399918:-,ribophorin_I,ACAP1->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_1,Oncogene{Bushman},chr17:7239848-7254797:+	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--HERC2P3	1	1	SF1	3289	chr11:64543970:-	HERC2P3	23501	chr15:20667699:-	ONLY_REF_SPLICE	NO	642	758	0	0	0.0121	0.0121	SF1->chr11:64532078-64546258:-,splicing_factor_1,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000195
SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC16A3--RPL3	1	1	SLC16A3	9982	chr17:80195581:+	RPL3	17361	chr22:39715628:-	ONLY_REF_SPLICE	NO	279	3	0.01	0.4	0.0121	0.0121	SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3	SET2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.4	0.0242	FALSE	0	0	0	2	0	FALSE	ACH-000195
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPAT--RP11-867G2.2	2350	755	NPAT	1143	chr11:108093227:-	RP11-867G2.2	27332	chr11:94250749:+	ONLY_REF_SPLICE	YES	62	0	0.98	1	23.7364	7.626	NPAT->chr11:108027942-108093369:-,nuclear_protein,_co-activator_of_histone_transcription,RP11-867G2.2->chr11:94245747-94265289:+	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	31.3624	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--CAPN13	729	534	USP34	17053	chr2:61566486:-	CAPN13	92190	chr2:30966445:-	ONLY_REF_SPLICE	YES	158	4	0.89	1	7.3633	5.3937	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CAPN13->calpain_13,chr2:30945637-31043408:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	12.757	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPAT--RP11-867G2.2	390	377	NPAT	1143	chr11:108093227:-	RP11-867G2.2	28437	chr11:94261250:+	ONLY_REF_SPLICE	YES	62	135	0.93	0.85	3.9392	3.8079	NPAT->chr11:108027942-108093369:-,nuclear_protein,_co-activator_of_histone_transcription,RP11-867G2.2->chr11:94245747-94265289:+	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.93	7.7471	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	192	45	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.9393	0.4545	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.3938	TRUE	508	994	45	981	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LCLAT1--USP34	126	51	LCLAT1	1158	chr2:30670249:+	USP34	41840	chr2:61546462:-	ONLY_REF_SPLICE	YES	4	199	0.98	0.47	1.2727	0.5151	LCLAT1->chr2:30670092-30867091:+,lysocardiolipin_acyltransferase_1,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.98	1.7878	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	122	58	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	95	66	0.65	0.73	1.2323	0.5858	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.73	1.8181	TRUE	181	1564	124	196	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--CAPN13	36	353	USP34	17053	chr2:61566486:-	CAPN13	92234	chr2:30966401:-	ONLY_REF_SPLICE	YES	158	6	0.71	0.98	0.3636	3.5655	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CAPN13->calpain_13,chr2:30945637-31043408:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.98	3.9291	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	114	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	291	25	0.29	0.82	1.1515	0.0303	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.82	1.1818	TRUE	519	3926	326	965	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	75	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7575	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7575	TRUE	0	0	0	518	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--CAPN13	5	189	USP34	16838	chr2:61566701:-	CAPN13	92190	chr2:30966445:-	ONLY_REF_SPLICE	YES	350	4	0.36	0.98	0.0505	1.909	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CAPN13->calpain_13,chr2:30945637-31043408:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.98	1.9595	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--CAPN13	4	170	USP34	16979	chr2:61566560:-	CAPN13	92234	chr2:30966401:-	INCL_NON_REF_SPLICE	YES	144	6	0.55	0.97	0.0404	1.7171	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CAPN13->calpain_13,chr2:30945637-31043408:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.97	1.7575	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPAT--RP11-867G2.2	2	126	NPAT	1143	chr11:108093227:-	RP11-867G2.2	29563	chr11:94265062:+	ONLY_REF_SPLICE	YES	62	261	0.67	0.33	0.0202	1.2727	NPAT->chr11:108027942-108093369:-,nuclear_protein,_co-activator_of_histone_transcription,RP11-867G2.2->chr11:94245747-94265289:+	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.67	1.2929	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LCLAT1--USP34	15	68	LCLAT1	3703	chr2:30699501:+	USP34	41840	chr2:61546462:-	ONLY_REF_SPLICE	YES	9	199	0.9	0.29	0.1515	0.6868	LCLAT1->chr2:30670092-30867091:+,lysocardiolipin_acyltransferase_1,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.9	0.8383	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LCLAT1--USP34	12	65	LCLAT1	2469	chr2:30682588:+	USP34	41840	chr2:61546462:-	ONLY_REF_SPLICE	YES	9	199	0.9	0.28	0.1212	0.6565	LCLAT1->chr2:30670092-30867091:+,lysocardiolipin_acyltransferase_1,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.9	0.7777	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LCLAT1--USP34	4	69	LCLAT1	4784	chr2:30712106:+	USP34	41840	chr2:61546462:-	ONLY_REF_SPLICE	YES	9	199	0.89	0.27	0.0404	0.6969	LCLAT1->chr2:30670092-30867091:+,lysocardiolipin_acyltransferase_1,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.89	0.7373	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--CAPN13	1	73	USP34	15722	chr2:61570950:-	CAPN13	92190	chr2:30966445:-	ONLY_REF_SPLICE	YES	484	4	0.13	0.95	0.0101	0.7373	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CAPN13->calpain_13,chr2:30945637-31043408:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.95	0.7474	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXDC1--TAF13	19	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1919	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1919	TRUE	7	10	0	216	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LCLAT1--USP34	2	59	LCLAT1	1179	chr2:30670270:+	USP34	41840	chr2:61546462:-	ONLY_REF_SPLICE	YES	13	199	0.82	0.23	0.0202	0.5959	LCLAT1->chr2:30670092-30867091:+,lysocardiolipin_acyltransferase_1,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.82	0.6161	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	12	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	58	61	0.31	0.3	0.1212	0.1414	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.31	0.2626	TRUE	267	562	48	632	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	14	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	73	4	0.18	0.8	0.1414	0.0202	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.8	0.1616	FALSE	59	21	0	114	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--CAPN13	1	53	USP34	15722	chr2:61570950:-	CAPN13	92234	chr2:30966401:-	ONLY_REF_SPLICE	YES	484	6	0.1	0.9	0.0101	0.5353	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CAPN13->calpain_13,chr2:30945637-31043408:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.9	0.5454	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIPEPP3--ABHD12	14	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1414	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1414	TRUE	64	202	9	44	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-TG	11	0	MT-ND3	1026	chrM:10084:+	MT-TG	4396	chrM:10040:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1111	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1111	FALSE	97	9	0	14	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TH--MT-ND4	3	24	MT-TH	1047	chrM:12184:+	MT-ND4	5318	chrM:12008:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.84	0.0303	0.2424	LOCAL_REARRANGEMENT:+:[1],MT-TH->chrM:12138-12206:+,mitochondrially_encoded_tRNA_histidine,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	1	0.2727	FALSE	2	9	0	2	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LTBP1--RASGRP3	7	0	LTBP1	9441	chr2:33413918:+	RASGRP3	44986	chr2:33661507:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0707	0	NEIGHBORS[36815],LTBP1->chr2:33172039-33624576:+,latent_transforming_growth_factor_beta_binding_protein_1,RASGRP3->RAS_guanyl_releasing_protein_3,chr2:33661391-33789817:+	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0707	FALSE	0	0	0	1	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAPN13--USP34	6	1	CAPN13	25844	chr2:30953596:-	USP34	51822	chr2:61546462:-	ONLY_REF_SPLICE	YES	264	199	0.03	0.03	0.0606	0.0101	CAPN13->calpain_13,chr2:30945637-31043408:-,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.03	0.0707	TRUE	0	0	0	1	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	5	5	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	3080	0	0	1	0.0505	0.0505	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.101	TRUE	0	0	0	100	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9461	15615	0	0	0.0606	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0707	FALSE	183	104	9	328	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	56	62	0.2	0.18	0.0303	0.1111	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.2	0.1414	TRUE	267	562	48	632	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	5	2	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	65	3	0.1	0.7	0.0505	0.0202	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.7	0.0707	FALSE	59	21	0	114	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	5	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	73	3	0.09	0.7	0.0505	0.0202	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.7	0.0707	FALSE	59	21	0	114	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	16	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	109	66	0.13	0.2	0.0101	0.1616	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.2	0.1717	TRUE	105	90	7	93	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LCLAT1--USP34	3	7	LCLAT1	1158	chr2:30670249:+	USP34	44109	chr2:61542109:-	ONLY_REF_SPLICE	YES	4	211	0.71	0.05	0.0303	0.0707	LCLAT1->chr2:30670092-30867091:+,lysocardiolipin_acyltransferase_1,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.71	0.101	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11203	15610	0	0	0.0404	0.0202	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0606	FALSE	183	104	9	328	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	4	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0.0202	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	FALSE	416	2512	207	587	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	8749	14306	0	0	0.0404	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0505	FALSE	183	104	9	328	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAP4K4--ADCY3	3	2	MAP4K4	18140	chr2:102476326:+	ADCY3	48754	chr2:25065253:-	ONLY_REF_SPLICE	YES	386	105	0.01	0.05	0.0303	0.0202	MAP4K4->chr2:102313312-102511149:+,mitogen-activated_protein_kinase_kinase_kinase_kinase_4,ADCY3->adenylate_cyclase_3,chr2:25042038-25142708:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.0505	FALSE	0	0	0	1	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2972	15866	0	0	0.0303	0.0202	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0505	FALSE	183	104	9	328	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	3	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0303	TRUE	0	5	1	24	1	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	3	0	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0303	FALSE	59	21	0	114	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	3	0	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0303	FALSE	59	21	0	114	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-TG	3	0	MT-ND3	1063	chrM:10121:+	MT-TG	4390	chrM:10034:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0303	FALSE	97	9	0	14	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--TBCA	3	0	RCC1	2175	chr1:28834672:+	TBCA	22542	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0303	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0303	TRUE	0	3	0	7	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC009403.2--EEF2K	2	0	AC009403.2	2738	chr7:155436162:-	EEF2K	22957	chr16:22284947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	AC009403.2->chr7:155403925-155437899:-,EEF2K->chr16:22217603-22298554:+,eukaryotic_elongation_factor_2_kinase	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC64--GCN1L1	2	0	CCDC64	3944	chr12:120436540:+	GCN1L1	21682	chr12:120628203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[32709],CCDC64->chr12:120427673-120532298:+,GCN1L1->chr12:120565007-120632513:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC88A--RTN4	2	0	CCDC88A	2106	chr2:55645952:-	RTN4	62662	chr2:55214834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	1	0	3	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--PAPD5	2	0	CPSF6	11046	chr12:69656342:+	PAPD5	37299	chr16:50268837:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PAPD5->PAP_associated_domain_containing_5,chr16:50186829-50269221:+	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--EML6	2	0	IGLL5	1480	chr22:23230439:+	EML6	10096	chr2:55040369:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,EML6->chr2:54950636-55199157:+,echinoderm_microtubule_associated_protein_like_6	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MARK2--SMAD2	2	0	MARK2	1633	chr11:63607032:+	SMAD2	30216	chr18:45423180:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	MARK2->chr11:63606400-63678491:+,microtubule_affinity_regulating_kinase_2,SMAD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_2,chr18:45357922-45457515:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2J4--C1orf50	2	0	POLR2J4	11429	chr7:44005466:-	C1orf50	26351	chr1:43239234:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	POLR2J4->chr7:43980494-44058774:-,chr7:44053161-44058769:-,polymerase_(RNA)_II_subunit_J4,_pseudogene,C1orf50->chr1:43232940-43263968:+,chromosome_1_open_reading_frame_50	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RASGRP3--C2orf74	2	0	RASGRP3	31116	chr2:33784097:+	C2orf74	39967	chr2:61391489:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	RASGRP3->RAS_guanyl_releasing_protein_3,chr2:33661391-33789817:+,C2orf74->chr2:61372243-61391964:+,chromosome_2_open_reading_frame_74	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ORC5	2	0	RCC1	2175	chr1:28834672:+	ORC5	29100	chr7:103808973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ORC5->chr7:103766788-103848495:-,origin_recognition_complex_subunit_5	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TOP3A--C4orf21	2	0	TOP3A	11482	chr17:18195959:-	C4orf21	32015	chr4:113545032:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	TOP3A->chr17:18174742-18218321:-,topoisomerase_(DNA)_III_alpha,C4orf21->chr4:113460492-113558151:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBC--GNB1	2	0	UBC	2915	chr12:125399133:-	GNB1	11036	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},UBC->chr12:125396150-125401914:-,ubiquitin_C,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--XPO1	2	0	USP34	1120	chr2:61697785:-	XPO1	85339	chr2:61729445:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	1	0	4	1	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--XPO1	2	0	USP34	1120	chr2:61697785:-	XPO1	87756	chr2:61725927:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	2	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LCLAT1--USP34	1	3	LCLAT1	3703	chr2:30699501:+	USP34	44339	chr2:61541879:-	ONLY_REF_SPLICE	YES	9	243	0.31	0.02	0.0101	0.0303	LCLAT1->chr2:30670092-30867091:+,lysocardiolipin_acyltransferase_1,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.31	0.0404	TRUE	0	0	0	1	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	2	KANSL1	9741	chr17:44171926:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	NO	95	5	0.03	0.38	0.0101	0.0202	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.38	0.0303	TRUE	51	25	1	17	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LCLAT1--USP34	1	2	LCLAT1	3703	chr2:30699501:+	USP34	51929	chr2:61516012:-	ONLY_REF_SPLICE	YES	9	295	0.25	0.01	0.0101	0.0202	LCLAT1->chr2:30670092-30867091:+,lysocardiolipin_acyltransferase_1,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.25	0.0303	FALSE	0	0	0	1	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COL1A1--COL4A2	1	1	COL1A1	12735	chr17:48267040:-	COL4A2	31756	chr13:111084672:+	ONLY_REF_SPLICE	NO	49	3	0.04	0.4	0.0101	0.0101	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.4	0.0202	TRUE	0	0	0	2	0	TRUE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--CYHR1	1	1	DANCR	1530	chr4:53579126:+	CYHR1	16157	chr8:145678843:-	ONLY_REF_SPLICE	NO	684	32	0	0.06	0.0101	0.0101	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.0202	FALSE	0	0	0	2	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--GDI2	1	1	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	28	856	0.07	0	0.0101	0.0101	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0202	FALSE	0	6	0	16	3	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--CHMP1A	1	1	IGLL5	1480	chr22:23230439:+	CHMP1A	12113	chr16:89713739:-	ONLY_REF_SPLICE	YES	301	252	0.01	0.01	0.0101	0.0101	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0202	FALSE	0	1	0	2	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PXMP2--ANKLE2	1	1	PXMP2	4945	chr12:133277955:+	ANKLE2	21143	chr12:133331719:-	ONLY_REF_SPLICE	YES	137	84	0.01	0.02	0.0101	0.0101	LOCAL_INVERSION:+:-:[4978],PXMP2->chr12:133264192-133297276:+,peroxisomal_membrane_protein_2,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0101	0.0101	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0202	FALSE	2	31	0	60	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.0101	0.0101	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.0202	FALSE	16	356	14	466	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG5--WHSC1	1	1	SNHG5	1780	chr6:86387672:-	WHSC1	15445	chr4:1902353:+	ONLY_REF_SPLICE	YES	1666	31	0	0.06	0.0101	0.0101	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--XPO1	1	1	USP34	1120	chr2:61697785:-	XPO1	80582	chr2:61761038:-	ONLY_REF_SPLICE	YES	185	900	0.01	0	0.0101	0.0101	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0202	FALSE	0	2	0	4	2	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WIPF1--OLA1	1	1	WIPF1	1143	chr2:175547502:-	OLA1	35650	chr2:175006728:-	ONLY_REF_SPLICE	YES	48	470	0.04	0	0.0101	0.0101	WIPF1->WAS/WASL_interacting_protein_family_member_1,chr2:175424300-175547644:-,OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000914
HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--CHMP1A	1	1	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	150	252	0.01	0.01	0.0101	0.0101	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0202	FALSE	1	20	1	28	3	FALSE	ACH-000914
SLR20_KIDNEY	RNASEH2A--RTBDN	908	795	RNASEH2A	3712	chr19:12921218:+	RTBDN	8851	chr19:12945660:-	ONLY_REF_SPLICE	YES	1255	2	0.58	1	10.7307	9.3952	LOCAL_INVERSION:+:-:[11840],RNASEH2A->chr19:12917394-12924452:+,ribonuclease_H2_subunit_A,RTBDN->chr19:12936292-12946242:-,retbindin	SLR20_KIDNEY	0.58	1	20.1259	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	TIMM23B--LINC00843	87	54	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.97	1.0282	0.6382	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SLR20_KIDNEY	0.97	1	1.6664	TRUE	508	994	45	981	0	FALSE	ACH-000127
SLR20_KIDNEY	SLC38A2--PTMA	79	0	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9336	0	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SLR20_KIDNEY	1	1	0.9336	TRUE	0	0	0	10	0	TRUE	ACH-000127
SLR20_KIDNEY	MAST1--PRDX2	73	5	MAST1	1056	chr19:12944820:+	PRDX2	24055	chr19:12912084:-	ONLY_REF_SPLICE	YES	0	434	1	0.15	0.8627	0.0591	LOCAL_INVERSION:+:-:[32071],MAST1->chr19:12944765-12985765:+,microtubule_associated_serine/threonine_kinase_1,PRDX2->chr19:12907634-12912694:-,peroxiredoxin_2	SLR20_KIDNEY	0.15	1	0.9218	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	ZFR--ZDHHC11B	51	35	ZFR	10785	chr5:32397325:-	ZDHHC11B	35147	chr5:733954:-	ONLY_REF_SPLICE	YES	244	4	0.26	0.96	0.6027	0.4136	ZFR->chr5:32354456-32444867:-,zinc_finger_RNA_binding_protein,ZDHHC11B->chr5:710475-767067:-,zinc_finger_DHHC-type_containing_11B	SLR20_KIDNEY	0.26	0.96	1.0163	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	AC104389.28--HBE1	49	42	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	39	0	0.7	1	0.5791	0.4964	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	SLR20_KIDNEY	0.7	1	1.0755	TRUE	0	48	0	65	48	FALSE	ACH-000127
SLR20_KIDNEY	TIMM23--RP11-464F9.1	49	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	434	11	0.11	0.83	0.5791	0.0591	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SLR20_KIDNEY	0.11	0.83	0.6382	TRUE	519	3926	326	965	0	FALSE	ACH-000127
SLR20_KIDNEY	C15orf57--CBX3	20	29	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	124	51	0.28	0.49	0.2364	0.3427	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SLR20_KIDNEY	0.28	0.49	0.5791	TRUE	267	562	48	632	0	FALSE	ACH-000127
SLR20_KIDNEY	ZNF654--HMGB2	27	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3191	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SLR20_KIDNEY	1	1	0.3191	TRUE	0	0	0	518	0	FALSE	ACH-000127
SLR20_KIDNEY	EXT2--ALKBH3	19	25	EXT2	12956	chr11:44151688:+	ALKBH3	36715	chr11:43940588:+	ONLY_REF_SPLICE	YES	538	136	0.08	0.24	0.2245	0.2954	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2,ALKBH3->alkB_homolog_3,_alpha-ketoglutarate-dependent_dioxygenase,chr11:43902361-43941816:+	SLR20_KIDNEY	0.08	0.24	0.5199	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	RP11-344E13.3--UBBP4	9	44	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	8	0	0.87	1	0.1064	0.52	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	SLR20_KIDNEY	0.87	1	0.6264	TRUE	23	13	0	54	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	15	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	14174	6	0	0.74	0.1773	0.0236	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	0.74	0.2009	FALSE	230	193	14	283	0	FALSE	ACH-000127
SLR20_KIDNEY	AC104389.28--HBE1	4	45	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	39	0	0.56	1	0.0473	0.5318	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	SLR20_KIDNEY	0.56	1	0.5791	TRUE	0	35	0	55	35	FALSE	ACH-000127
SLR20_KIDNEY	STX5--WDR74	10	21	STX5	6582	chr11:62591638:-	WDR74	13566	chr11:62607131:-	ONLY_REF_SPLICE	YES	194	58	0.14	0.35	0.1182	0.2482	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	SLR20_KIDNEY	0.14	0.35	0.3664	TRUE	0	4	0	1	2	TRUE	ACH-000127
SLR20_KIDNEY	MT-ND6--MT-TE	14	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1655	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR20_KIDNEY	1	1	0.1655	FALSE	499	1288	110	792	0	FALSE	ACH-000127
SLR20_KIDNEY	RP11-96H19.1--RP11-446N19.1	13	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.94	0.94	0.1536	0.0473	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SLR20_KIDNEY	0.94	0.94	0.2009	FALSE	515	4851	409	746	0	FALSE	ACH-000127
SLR20_KIDNEY	C15orf57--CBX3	9	19	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	122	52	0.19	0.35	0.1064	0.2245	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SLR20_KIDNEY	0.19	0.35	0.3309	TRUE	267	562	48	632	0	FALSE	ACH-000127
SLR20_KIDNEY	STX5--WDR74	7	23	STX5	6582	chr11:62591638:-	WDR74	13358	chr11:62607339:-	ONLY_REF_SPLICE	YES	194	42	0.13	0.42	0.0827	0.2718	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	SLR20_KIDNEY	0.13	0.42	0.3545	TRUE	0	4	0	1	2	TRUE	ACH-000127
SLR20_KIDNEY	MT-ATP6--MT-CO1	12	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	13043	26233	0	0	0.1418	0.0236	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SLR20_KIDNEY	0	0	0.1654	FALSE	183	104	9	328	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	9	13	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18257	67	0	0.25	0.1064	0.1536	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	0.25	0.26	FALSE	231	217	16	283	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	11	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14343	6	0	0.68	0.13	0.0236	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	0.68	0.1536	FALSE	230	198	14	283	0	FALSE	ACH-000127
SLR20_KIDNEY	CYFIP2--ZFP3	10	4	CYFIP2	22825	chr5:156747810:+	ZFP3	49738	chr17:4994792:+	ONLY_REF_SPLICE	YES	65	0	0.18	1	0.1182	0.0473	CYFIP2->chr5:156693089-156822606:+,cytoplasmic_FMR1_interacting_protein_2,ZFP3->ZFP3_zinc_finger_protein,chr17:4981543-4999669:+	SLR20_KIDNEY	0.18	1	0.1655	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	MT-ND6--MT-TE	10	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1182	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR20_KIDNEY	1	1	0.1182	FALSE	499	1288	110	792	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	6	14	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	18993	1	0	0.95	0.0709	0.1655	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	0.95	0.2364	FALSE	231	217	16	283	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	6	13	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19657	6	0	0.76	0.0709	0.1536	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	0.76	0.2245	FALSE	231	217	16	283	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND6--MT-TE	7	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0827	0.0709	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR20_KIDNEY	0.93	1	0.1536	FALSE	499	1288	110	792	0	FALSE	ACH-000127
SLR20_KIDNEY	NIPA2--POLA1	8	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0945	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SLR20_KIDNEY	1	1	0.0945	TRUE	46	1352	75	139	0	FALSE	ACH-000127
SLR20_KIDNEY	POLR2A--MT-ATP8	8	0	POLR2A	16235	chr17:7416583:+	MT-ATP8	20701	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0945	0	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	1	1	0.0945	FALSE	0	0	0	3	0	FALSE	ACH-000127
SLR20_KIDNEY	POLR2A--MT-ATP8	8	0	POLR2A	16256	chr17:7416604:+	MT-ATP8	20701	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0945	0	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	1	1	0.0945	FALSE	0	0	0	3	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	4	14	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2598	67	0.01	0.21	0.0473	0.1655	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0.01	0.21	0.2128	FALSE	216	209	16	281	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	3	17	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	19564	0	0	1	0.0355	0.2009	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	1	0.2364	FALSE	231	217	16	283	0	FALSE	ACH-000127
SLR20_KIDNEY	RP11-344E13.3--UBBP4	3	17	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34816	chr17:21730838:+	INCL_NON_REF_SPLICE	YES	8	23	0.71	0.47	0.0355	0.2009	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	SLR20_KIDNEY	0.47	0.71	0.2364	TRUE	23	13	0	54	0	FALSE	ACH-000127
SLR20_KIDNEY	RP11-120D5.1--MID1	6	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	12	32	0.4	0.2	0.0709	0.0236	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SLR20_KIDNEY	0.2	0.4	0.0945	FALSE	16	356	14	466	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ATP6--MT-CO1	6	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	12787	25345	0	0	0.0709	0.0118	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SLR20_KIDNEY	0	0	0.0827	FALSE	183	104	9	328	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	6	1	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	16726	1957	0	0	0.0709	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	0	0.0827	FALSE	231	205	14	283	0	FALSE	ACH-000127
SLR20_KIDNEY	SAMD8--KAT6B	6	1	SAMD8	2395	chr10:76871480:+	KAT6B	35343	chr10:76780340:+	ONLY_REF_SPLICE	YES	2	33	0.78	0.17	0.0709	0.0118	LOCAL_REARRANGEMENT:+:[66964],SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B	SLR20_KIDNEY	0.17	0.78	0.0827	TRUE	0	1	0	1	1	TRUE	ACH-000127
SLR20_KIDNEY	EEF2--MT2A	4	7	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	3814	3	0	0.79	0.0473	0.0827	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SLR20_KIDNEY	0	0.79	0.13	TRUE	1	0	0	19	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	4	7	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	21074	0	0	1	0.0473	0.0827	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	1	0.13	FALSE	231	217	16	283	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	5	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14174	6	0	0.54	0.0591	0.0236	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	0.54	0.0827	FALSE	230	193	14	283	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	3	10	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	19184	1607	0	0.01	0.0355	0.1182	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	0.01	0.1537	FALSE	231	217	16	283	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND6--MT-TE	4	6	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0473	0.0709	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR20_KIDNEY	0.91	1	0.1182	FALSE	499	1288	110	792	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	3	9	MT-ND4	1572	chrM:11331:+	MT-ATP8	5534	chrM:8521:+	INCL_NON_REF_SPLICE	YES	21996	2036	0	0.01	0.0355	0.1064	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	0.01	0.1419	FALSE	231	217	16	283	0	FALSE	ACH-000127
SLR20_KIDNEY	HNF1B--RP11-115K3.2	4	4	HNF1B	1706	chr17:36104532:-	RP11-115K3.2	19744	chr17:36233931:-	ONLY_REF_SPLICE	YES	39	9	0.17	0.47	0.0473	0.0473	LOCAL_REARRANGEMENT:-:[82688],HNF1B->HNF1_homeobox_B,chr17:36046435-36105237:-,RP11-115K3.2->chr17:36187925-36244363:-	SLR20_KIDNEY	0.17	0.47	0.0946	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	3	8	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	21116	0	0	1	0.0355	0.0945	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	1	0.13	FALSE	231	217	16	283	0	FALSE	ACH-000127
SLR20_KIDNEY	PGAP2--NUP98	5	0	PGAP2	3019	chr11:3829881:+	NUP98	15300	chr11:3803375:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0591	0	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},NEIGHBORS_OVERLAP:+:-:[68],PGAP2->chr11:3818954-3847601:+,post-GPI_attachment_to_proteins_2,NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa	SLR20_KIDNEY	1	1	0.0591	FALSE	0	0	0	1	0	FALSE	ACH-000127
SLR20_KIDNEY	RCC1--CTD-2354A18.1	5	0	RCC1	2175	chr1:28834672:+	CTD-2354A18.1	21770	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0591	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CTD-2354A18.1->chr18:70992176-71017113:+	SLR20_KIDNEY	1	1	0.0591	TRUE	0	1	0	7	0	TRUE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	4	3	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	20690	1607	0	0	0.0473	0.0355	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	0	0.0828	FALSE	231	205	14	283	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	4	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	NO	14174	0	0	1	0.0473	0.0355	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	1	0.0828	FALSE	230	193	14	283	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	3	7	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	21161	0	0	1	0.0355	0.0827	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	1	0.1182	FALSE	231	217	16	283	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	4	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14306	67	0	0.08	0.0473	0.0236	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	0.08	0.0709	FALSE	230	198	14	283	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	4	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16943	6	0	0.5	0.0473	0.0236	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	0.5	0.0709	FALSE	231	205	14	283	0	FALSE	ACH-000127
SLR20_KIDNEY	HUWE1--MT-ND4L	3	3	HUWE1	69943	chrX:53565915:-	MT-ND4L	79803	chrM:10471:+	INCL_NON_REF_SPLICE	YES	478	0	0.01	1	0.0355	0.0355	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SLR20_KIDNEY	0.01	1	0.071	FALSE	0	0	0	4	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ATP6--MT-CO1	3	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3984	26576	0	0	0.0355	0.0355	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SLR20_KIDNEY	0	0	0.071	FALSE	183	104	9	328	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND6--MT-TE	3	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.0355	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR20_KIDNEY	1	1	0.071	FALSE	499	1288	110	792	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	12992	22368	0	0	0.0355	0.0118	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SLR20_KIDNEY	0	0	0.0473	FALSE	183	104	9	328	0	FALSE	ACH-000127
SLR20_KIDNEY	MT-ND4--MT-ATP8	3	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	14415	100	0	0.04	0.0355	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR20_KIDNEY	0	0.04	0.0473	FALSE	231	204	14	283	0	FALSE	ACH-000127
SLR20_KIDNEY	MYH9--MT2A	3	1	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	1152	3	0	0.57	0.0355	0.0118	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SLR20_KIDNEY	0	0.57	0.0473	FALSE	0	0	0	24	0	FALSE	ACH-000127
SLR20_KIDNEY	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SLR20_KIDNEY	1	1	0.0355	TRUE	0	0	0	434	0	FALSE	ACH-000127
SLR20_KIDNEY	ZNF490--RNASEH2A	3	0	ZNF490	1034	chr19:12750879:-	RNASEH2A	18125	chr19:12917822:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0	ZNF490->chr19:12688775-12750912:-,zinc_finger_protein_490,RNASEH2A->chr19:12917394-12924452:+,ribonuclease_H2_subunit_A	SLR20_KIDNEY	1	1	0.0355	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0118	0.0709	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SLR20_KIDNEY	0.88	1	0.0827	FALSE	407	2205	196	549	0	FALSE	ACH-000127
SLR20_KIDNEY	HNF1B--RP11-115K3.2	1	5	HNF1B	1706	chr17:36104532:-	RP11-115K3.2	18689	chr17:36243635:-	ONLY_REF_SPLICE	YES	39	0	0.13	1	0.0118	0.0591	LOCAL_REARRANGEMENT:-:[82688],HNF1B->HNF1_homeobox_B,chr17:36046435-36105237:-,RP11-115K3.2->chr17:36187925-36244363:-	SLR20_KIDNEY	0.13	1	0.0709	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0236	0.0118	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR20_KIDNEY	0.75	1	0.0354	FALSE	292	1546	117	613	0	FALSE	ACH-000127
SLR20_KIDNEY	RBCK1--TRIB3	2	1	RBCK1	3478	chr20:390669:+	TRIB3	19996	chr20:368655:+	ONLY_REF_SPLICE	YES	1233	341	0	0.01	0.0236	0.0118	LOCAL_REARRANGEMENT:+:[9939],RBCK1->RANBP2-type_and_C3HC4-type_zinc_finger_containing_1,chr20:388142-411610:+,TRIB3->chr20:361261-378203:+,tribbles_pseudokinase_3	SLR20_KIDNEY	0	0.01	0.0354	FALSE	0	0	0	1	0	FALSE	ACH-000127
SLR20_KIDNEY	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0118	0.0591	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SLR20_KIDNEY	0.86	0.86	0.0709	FALSE	467	2173	244	435	0	FALSE	ACH-000127
SLR20_KIDNEY	AC104389.28--HBE1	2	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	SLR20_KIDNEY	1	1	0.0236	TRUE	0	16	0	53	13	FALSE	ACH-000127
SLR20_KIDNEY	C1orf63--UBE2R2	2	0	C1orf63	13914	chr1:25571641:-	UBE2R2	21196	chr9:33886879:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	SLR20_KIDNEY	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	DANCR--CCDC91	2	0	DANCR	1530	chr4:53579126:+	CCDC91	32061	chr12:28636985:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	SLR20_KIDNEY	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	GADD45GIP1--TRMT1	2	0	GADD45GIP1	1374	chr19:13067677:-	TRMT1	12266	chr19:13218673:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GADD45GIP1->GADD45G_interacting_protein_1,Oncogene{Bushman},chr19:13064972-13068050:-,TRMT1->chr19:13215716-13228381:-,tRNA_methyltransferase_1	SLR20_KIDNEY	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	LIMK1--CEP41	2	0	LIMK1	16954	chr7:73530288:+	CEP41	35782	chr7:130044549:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	LIMK1->LIM_domain_kinase_1,Oncogene{Bushman},chr7:73497263-73536855:+,CEP41->centrosomal_protein_41,chr7:130033612-130082274:-	SLR20_KIDNEY	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	SUPT5H--IFNL1	2	0	SUPT5H	14387	chr19:39959812:+	IFNL1	25366	chr19:39787445:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	SUPT5H->SPT5_homolog,_DSIF_elongation_factor_subunit,chr19:39926796-39967310:+,IFNL1->chr19:39786965-39789313:+,interferon,_lambda_1	SLR20_KIDNEY	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000127
SLR20_KIDNEY	AC009403.2--CD151	1	2	AC009403.2	2738	chr7:155436162:-	CD151	11350	chr11:836063:+	ONLY_REF_SPLICE	YES	51	574	0.06	0.01	0.0118	0.0236	AC009403.2->chr7:155403925-155437899:-,CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+	SLR20_KIDNEY	0.01	0.06	0.0354	FALSE	0	0	0	1	0	FALSE	ACH-000127
SLR20_KIDNEY	ARCN1--APLP2	1	1	ARCN1	1161	chr11:118443265:+	APLP2	22292	chr11:129979324:+	ONLY_REF_SPLICE	YES	654	2717	0	0	0.0118	0.0118	ARCN1->archain_1,chr11:118443105-118473748:+,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	SLR20_KIDNEY	0	0	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000127
SLR20_KIDNEY	ATXN10--FUS	1	1	ATXN10	12366	chr22:46136418:+	FUS	30464	chr16:31198123:+	ONLY_REF_SPLICE	YES	675	921	0	0	0.0118	0.0118	ATXN10->ataxin_10,chr22:46067678-46241187:+,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	SLR20_KIDNEY	0	0	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000127
SLR20_KIDNEY	DLEU2--YY1	1	1	DLEU2	5811	chr13:50642233:-	YY1	20798	chr14:100743755:+	ONLY_REF_SPLICE	YES	68	471	0.03	0	0.0118	0.0118	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),YY1->YY1_transcription_factor,chr14:100704635-100749129:+	SLR20_KIDNEY	0	0.03	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000127
SLR20_KIDNEY	FARS2--RP3-380B8.4	1	1	FARS2	9557	chr6:5613553:+	RP3-380B8.4	14405	chr6:5852296:+	ONLY_REF_SPLICE	NO	26	0	0.07	1	0.0118	0.0118	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	SLR20_KIDNEY	0.07	1	0.0236	FALSE	1	11	1	4	0	FALSE	ACH-000127
SLR20_KIDNEY	KLC1--HNRNPC	1	1	KLC1	2407	chr14:104095831:+	HNRNPC	37556	chr14:21681276:-	ONLY_REF_SPLICE	YES	39	2628	0.05	0	0.0118	0.0118	KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	SLR20_KIDNEY	0	0.05	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000127
SLR20_KIDNEY	LETM1--RSPRY1	1	1	LETM1	11681	chr4:1834471:-	RSPRY1	27792	chr16:57238416:+	ONLY_REF_SPLICE	YES	91	81	0.02	0.02	0.0118	0.0118	LETM1->chr4:1813206-1857974:-,leucine_zipper_and_EF-hand_containing_transmembrane_protein_1,RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1	SLR20_KIDNEY	0.02	0.02	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000127
SLR20_KIDNEY	PHF20--CPNE1	1	1	PHF20	4583	chr20:34389527:+	CPNE1	36531	chr20:34246904:-	ONLY_REF_SPLICE	NO	187	521	0.01	0	0.0118	0.0118	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,CPNE1->chr20:34213953-34252878:-,copine_1	SLR20_KIDNEY	0	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000127
SLR20_KIDNEY	RP11-592B15.3--TIMM23	1	1	RP11-592B15.3	1206	chr10:51371133:-	TIMM23	16369	chr10:51620382:-	ONLY_REF_SPLICE	YES	40	595	0.05	0	0.0118	0.0118	RP11-592B15.3->chr10:51253146-51371338:-,TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23	SLR20_KIDNEY	0	0.05	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000127
SLR20_KIDNEY	RP11-592B15.3--TIMM23	1	1	RP11-592B15.3	1206	chr10:51371133:-	TIMM23	22842	chr10:51592619:-	ONLY_REF_SPLICE	YES	40	427	0.05	0	0.0118	0.0118	RP11-592B15.3->chr10:51253146-51371338:-,TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23	SLR20_KIDNEY	0	0.05	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000127
SLR20_KIDNEY	STAM--SSX2IP	1	1	STAM	1255	chr10:17686378:+	SSX2IP	22002	chr1:85136991:-	ONLY_REF_SPLICE	NO	77	18	0.03	0.1	0.0118	0.0118	STAM->chr10:17686124-17757913:+,signal_transducing_adaptor_molecule,SSX2IP->chr1:85109390-85156486:-,synovial_sarcoma,_X_breakpoint_2_interacting_protein	SLR20_KIDNEY	0.03	0.1	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000127
SLR20_KIDNEY	TMED5--LRRC8D	1	1	TMED5	1675	chr1:93645611:-	LRRC8D	24566	chr1:90398626:+	ONLY_REF_SPLICE	YES	266	98	0.01	0.02	0.0118	0.0118	TMED5->chr1:93615299-93646285:-,transmembrane_p24_trafficking_protein_5,LRRC8D->chr1:90286573-90402170:+,leucine-rich_repeat_containing_8_family_member_D	SLR20_KIDNEY	0.01	0.02	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000127
SLR20_KIDNEY	TRA2A--RPS27A	1	1	TRA2A	1253	chr7:23571408:-	RPS27A	13604	chr2:55459944:+	ONLY_REF_SPLICE	NO	623	121	0	0.02	0.0118	0.0118	TRA2A->chr7:23544399-23571660:-,transformer_2_alpha_homolog,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	SLR20_KIDNEY	0	0.02	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000127
SLR20_KIDNEY	TTL--RP11-438J1.1	1	1	TTL	3856	chr2:113243572:+	RP11-438J1.1	32033	chr3:10318045:+	ONLY_REF_SPLICE	NO	87	93	0.02	0.02	0.0118	0.0118	TTL->Oncogene{Bushman},chr2:113239731-113299316:+,tubulin_tyrosine_ligase,RP11-438J1.1->chr3:10291056-10327480:+	SLR20_KIDNEY	0.02	0.02	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000127
SLR20_KIDNEY	ZNF490--RNASEH2A	1	1	ZNF490	2199	chr19:12748090:-	RNASEH2A	18125	chr19:12917822:+	ONLY_REF_SPLICE	YES	0	3060	1	0	0.0118	0.0118	ZNF490->chr19:12688775-12750912:-,zinc_finger_protein_490,RNASEH2A->chr19:12917394-12924452:+,ribonuclease_H2_subunit_A	SLR20_KIDNEY	0	1	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000127
IPC298_SKIN	ARMC9--PSMD1	584	471	ARMC9	4785	chr2:232079714:+	PSMD1	57973	chr2:232010954:+	ONLY_REF_SPLICE	YES	339	264	0.76	0.8	9.6993	7.8225	{Klijn_CCL:Skin=3,Other=1,Brain=1},LOCAL_REARRANGEMENT:+:[25719],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1	IPC298_SKIN	0.76	0.8	17.5218	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	ARMC9--PSMD1	3	472	ARMC9	4924	chr2:232079853:+	PSMD1	57973	chr2:232010954:+	ONLY_REF_SPLICE	YES	325	264	0.59	0.64	0.0498	7.8391	{Klijn_CCL:Skin=3,Other=1,Brain=1},LOCAL_REARRANGEMENT:+:[25719],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1	IPC298_SKIN	0.59	0.64	7.8889	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	ZNF573--SYT3	83	33	ZNF573	13116	chr19:38260645:-	SYT3	33747	chr19:51126012:-	ONLY_REF_SPLICE	YES	2	1	0.98	0.99	1.3785	0.5481	ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573,SYT3->chr19:51124564-51171651:-,synaptotagmin_3	IPC298_SKIN	0.98	0.99	1.9266	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	AP003900.6--AC008132.1	51	9	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	2	0	0.97	1	0.847	0.1495	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	IPC298_SKIN	0.97	1	0.9965	TRUE	0	0	0	25	0	FALSE	ACH-000915
IPC298_SKIN	ARMC9--PSMD1	5	170	ARMC9	3614	chr2:232072965:+	PSMD1	57973	chr2:232010954:+	ONLY_REF_SPLICE	YES	614	264	0.22	0.4	0.083	2.8234	{Klijn_CCL:Skin=3,Other=1,Brain=1},LOCAL_REARRANGEMENT:+:[25719],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1	IPC298_SKIN	0.22	0.4	2.9064	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	MT-ND4--MT-ATP8	43	10	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	16978	1543	0	0.03	0.7142	0.1661	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IPC298_SKIN	0	0.03	0.8803	FALSE	231	217	16	283	0	FALSE	ACH-000915
IPC298_SKIN	MT-TA--MT-TC	38	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6311	0.0664	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IPC298_SKIN	1	1	0.6975	FALSE	462	80	0	856	0	FALSE	ACH-000915
IPC298_SKIN	TIMM23B--LINC00843	34	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5647	0.2159	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	IPC298_SKIN	1	1	0.7806	TRUE	508	994	45	981	0	FALSE	ACH-000915
IPC298_SKIN	ZNF140--ASRGL1	31	17	ZNF140	4724	chr12:133660147:+	ASRGL1	16116	chr11:62124459:+	ONLY_REF_SPLICE	YES	17	22	0.74	0.69	0.5149	0.2823	ZNF140->chr12:133656424-133684130:+,zinc_finger_protein_140,ASRGL1->asparaginase_like_1,chr11:62104920-62160882:+	IPC298_SKIN	0.69	0.74	0.7972	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	OIP5-AS1--ARFGAP2	22	32	OIP5-AS1	18654	chr15:41601039:+	ARFGAP2	29469	chr11:47189802:-	INCL_NON_REF_SPLICE	YES	5	40	0.92	0.57	0.3654	0.5315	OIP5-AS1->OIP5_antisense_RNA_1,chr15:41576188-41601901:+,ARFGAP2->ADP_ribosylation_factor_GTPase_activating_protein_2,chr11:47185848-47198676:-	IPC298_SKIN	0.57	0.92	0.8969	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	PLXDC1--TAF13	28	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.465	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	IPC298_SKIN	1	1	0.465	TRUE	7	10	0	216	0	FALSE	ACH-000915
IPC298_SKIN	TIMP3--MT-ND4	22	3	TIMP3	5621	chr22:33255392:+	MT-ND4	12727	chrM:11227:+	INCL_NON_REF_SPLICE	YES	7503	18317	0	0	0.3654	0.0498	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	IPC298_SKIN	0	0	0.4152	FALSE	0	0	0	10	0	FALSE	ACH-000915
IPC298_SKIN	TIMM23--RP11-464F9.1	20	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	291	2	0.07	0.92	0.3322	0.0332	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	IPC298_SKIN	0.07	0.92	0.3654	TRUE	519	3926	326	965	0	FALSE	ACH-000915
IPC298_SKIN	CEP89--CTC-360P9.1	13	11	CEP89	14040	chr19:33422335:-	CTC-360P9.1	29501	chr19:32378832:-	ONLY_REF_SPLICE	YES	20	0	0.55	1	0.2159	0.1827	CEP89->centrosomal_protein_89,chr19:33369902-33462897:-,CTC-360P9.1->chr19:32377610-32399190:-	IPC298_SKIN	0.55	1	0.3986	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	RP11-444D3.1--SOX5	13	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	6	1	0.76	0.2159	0.0997	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	IPC298_SKIN	0.76	1	0.3156	TRUE	477	1352	189	275	0	FALSE	ACH-000915
IPC298_SKIN	AP003900.6--AC008132.1	10	17	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	2	0	0.93	1	0.1661	0.2823	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	IPC298_SKIN	0.93	1	0.4484	TRUE	1	1	0	28	1	FALSE	ACH-000915
IPC298_SKIN	DDX11--ALK	10	14	DDX11	11712	chr12:31244805:+	ALK	48589	chr2:29448431:-	ONLY_REF_SPLICE	YES	57	0	0.3	1	0.1661	0.2325	DDX11->DEAD/H-box_helicase_11,chr12:31226779-31257725:+,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	IPC298_SKIN	0.3	1	0.3986	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	MT-ND4--MT-ATP8	12	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	12965	2	0	0.88	0.1993	0.0498	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IPC298_SKIN	0	0.88	0.2491	FALSE	230	193	14	283	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND4--MT-ATP8	11	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13101	4	0	0.78	0.1827	0.0498	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IPC298_SKIN	0	0.78	0.2325	FALSE	230	198	14	283	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND4--MT-ATP8	9	11	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17313	4	0	0.83	0.1495	0.1827	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IPC298_SKIN	0	0.83	0.3322	FALSE	231	217	16	283	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND6--MT-TE	8	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1329	0.1495	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IPC298_SKIN	0.94	1	0.2824	FALSE	499	1288	110	792	0	FALSE	ACH-000915
IPC298_SKIN	HSP90AB1--MT-RNR2	10	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1661	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IPC298_SKIN	1	1	0.1661	FALSE	13	9	0	364	0	FALSE	ACH-000915
IPC298_SKIN	MYO9B--TMOD2	10	0	MYO9B	1094	chr19:17186684:+	TMOD2	54724	chr15:52090394:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1661	0	MYO9B->chr19:17186591-17325346:+,myosin_IXB,TMOD2->chr15:52043758-52108565:+,tropomodulin_2	IPC298_SKIN	1	1	0.1661	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1495	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IPC298_SKIN	1	1	0.1495	FALSE	13	9	0	364	0	FALSE	ACH-000915
IPC298_SKIN	VAT1--MT-ND4L	8	4	VAT1	7912	chr17:41167714:-	MT-ND4L	12006	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1770	0	0.01	1	0.1329	0.0664	VAT1->chr17:41166622-41177140:-,vesicle_amine_transport_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IPC298_SKIN	0.01	1	0.1993	FALSE	0	0	0	5	0	FALSE	ACH-000915
IPC298_SKIN	ZNF140--ASRGL1	4	19	ZNF140	7527	chr12:133677639:+	ASRGL1	16116	chr11:62124459:+	ONLY_REF_SPLICE	YES	22	22	0.51	0.51	0.0664	0.3156	ZNF140->chr12:133656424-133684130:+,zinc_finger_protein_140,ASRGL1->asparaginase_like_1,chr11:62104920-62160882:+	IPC298_SKIN	0.51	0.51	0.382	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	MT-ND6--MT-TE	8	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.1329	0.0332	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IPC298_SKIN	0.91	1	0.1661	FALSE	499	1288	110	792	0	FALSE	ACH-000915
IPC298_SKIN	ZNF573--SYT3	3	22	ZNF573	11557	chr19:38262204:-	SYT3	33747	chr19:51126012:-	ONLY_REF_SPLICE	YES	5	1	0.83	0.96	0.0498	0.3654	ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573,SYT3->chr19:51124564-51171651:-,synaptotagmin_3	IPC298_SKIN	0.83	0.96	0.4152	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	MT-ATP6--MT-CO1	8	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1329	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IPC298_SKIN	1	1	0.1329	FALSE	183	104	9	328	0	FALSE	ACH-000915
IPC298_SKIN	OIP5-AS1--ARFGAP2	3	19	OIP5-AS1	18437	chr15:41600822:+	ARFGAP2	29469	chr11:47189802:-	ONLY_REF_SPLICE	YES	3	40	0.88	0.35	0.0498	0.3156	OIP5-AS1->OIP5_antisense_RNA_1,chr15:41576188-41601901:+,ARFGAP2->ADP_ribosylation_factor_GTPase_activating_protein_2,chr11:47185848-47198676:-	IPC298_SKIN	0.35	0.88	0.3654	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	TIMP3--MT-ND4L	7	2	TIMP3	5604	chr22:33255375:+	MT-ND4L	12261	chrM:10471:+	INCL_NON_REF_SPLICE	YES	7551	0	0	1	0.1163	0.0332	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IPC298_SKIN	0	1	0.1495	FALSE	0	0	0	2	0	FALSE	ACH-000915
IPC298_SKIN	ENO1--EEF2	7	1	ENO1	11548	chr1:8923321:-	EEF2	24932	chr19:3976731:-	INCL_NON_REF_SPLICE	YES	5363	3323	0	0	0.1163	0.0166	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	IPC298_SKIN	0	0	0.1329	TRUE	0	0	0	9	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND4--MT-ATP8	5	9	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	18594	0	0	1	0.083	0.1495	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IPC298_SKIN	0	1	0.2325	FALSE	231	217	16	283	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND4--MT-CO2	6	4	MT-ND4	1496	chrM:11255:+	MT-CO2	5511	chrM:7718:+	INCL_NON_REF_SPLICE	YES	18578	6513	0	0	0.0997	0.0664	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IPC298_SKIN	0	0	0.1661	FALSE	5	1	0	19	0	FALSE	ACH-000915
IPC298_SKIN	ZNF71--CTC-459F4.3	4	11	ZNF71	2250	chr19:57112959:+	CTC-459F4.3	23024	chr19:28391697:+	ONLY_REF_SPLICE	YES	29	0	0.34	1	0.0664	0.1827	ZNF71->chr19:57106632-57137849:+,zinc_finger_protein_71,CTC-459F4.3->chr19:28284371-28409771:+	IPC298_SKIN	0.34	1	0.2491	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	C15orf57--CBX3	6	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	58	67	0.12	0.11	0.0997	0.0332	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	IPC298_SKIN	0.11	0.12	0.1329	TRUE	267	562	48	632	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND4--MT-ATP8	6	2	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	15179	1857	0	0	0.0997	0.0332	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IPC298_SKIN	0	0	0.1329	FALSE	231	205	14	283	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND6--MT-TE	5	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.083	0.083	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IPC298_SKIN	0.91	1	0.166	FALSE	499	1288	110	792	0	FALSE	ACH-000915
IPC298_SKIN	MT-ATP6--MT-CO1	6	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0997	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IPC298_SKIN	1	1	0.0997	FALSE	183	104	9	328	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND4--MT-ATP8	3	12	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16296	63	0	0.19	0.0498	0.1993	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IPC298_SKIN	0	0.19	0.2491	FALSE	231	217	16	283	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND4--MT-ATP8	4	8	MT-ND4	1540	chrM:11299:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21018	63	0	0.16	0.0664	0.1329	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IPC298_SKIN	0	0.16	0.1993	FALSE	231	217	16	283	0	FALSE	ACH-000915
IPC298_SKIN	AP003900.6--AC008132.1	4	7	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	2	1	0.85	0.92	0.0664	0.1163	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	IPC298_SKIN	0.85	0.92	0.1827	TRUE	0	0	0	16	0	TRUE	ACH-000915
IPC298_SKIN	MT-ND4--MT-ATP8	4	7	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	20743	743	0	0.01	0.0664	0.1163	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IPC298_SKIN	0	0.01	0.1827	FALSE	231	217	16	283	0	FALSE	ACH-000915
IPC298_SKIN	RP1-34H18.1--NAV3	5	3	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.083	0.0498	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	IPC298_SKIN	0.89	1	0.1328	TRUE	254	575	65	124	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND6--MT-TE	5	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.083	0.0332	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IPC298_SKIN	0.88	1	0.1162	FALSE	499	1288	110	792	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND4--MT-ATP8	4	4	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15425	4	0	0.67	0.0664	0.0664	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IPC298_SKIN	0	0.67	0.1328	FALSE	231	205	14	283	0	FALSE	ACH-000915
IPC298_SKIN	MT-TA--MT-TC	4	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0.0664	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IPC298_SKIN	1	1	0.1328	FALSE	462	80	0	856	0	FALSE	ACH-000915
IPC298_SKIN	LDLRAD3--PRR5L	4	3	LDLRAD3	5673	chr11:36120011:+	PRR5L	17578	chr11:36317840:+	INCL_NON_REF_SPLICE	YES	107	0	0.06	1	0.0664	0.0498	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	IPC298_SKIN	0.06	1	0.1162	FALSE	0	52	1	15	0	FALSE	ACH-000915
IPC298_SKIN	MMS19--EXOC6	3	7	MMS19	1522	chr10:99258030:-	EXOC6	49961	chr10:94817980:+	ONLY_REF_SPLICE	YES	65	27	0.13	0.27	0.0498	0.1163	MMS19->MMS19_homolog,_cytosolic_iron-sulfur_assembly_component,chr10:99218081-99258551:-,EXOC6->chr10:94590935-94819250:+,exocyst_complex_component_6	IPC298_SKIN	0.13	0.27	0.1661	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	MT-ND4--MT-ATP8	3	7	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18594	0	0	1	0.0498	0.1163	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IPC298_SKIN	0	1	0.1661	FALSE	231	217	16	283	0	FALSE	ACH-000915
IPC298_SKIN	SCARB1--UBC	4	3	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	915	52	0.01	0.12	0.0664	0.0498	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	IPC298_SKIN	0.01	0.12	0.1162	TRUE	55	66	6	101	0	FALSE	ACH-000915
IPC298_SKIN	ZNF71--AC022153.1	4	3	ZNF71	2250	chr19:57112959:+	AC022153.1	16482	chr19:28447110:+	ONLY_REF_SPLICE	YES	29	0	0.19	1	0.0664	0.0498	ZNF71->chr19:57106632-57137849:+,zinc_finger_protein_71,AC022153.1->chr19:28393503-28475651:+	IPC298_SKIN	0.19	1	0.1162	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	MT-ND4--MT-ATP8	3	6	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	17438	0	0	1	0.0498	0.0997	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IPC298_SKIN	0	1	0.1495	FALSE	231	205	14	283	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND4--MT-ATP8	3	6	MT-ND4	1521	chrM:11280:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	20513	555	0	0.02	0.0498	0.0997	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IPC298_SKIN	0	0.02	0.1495	FALSE	231	217	16	283	0	FALSE	ACH-000915
IPC298_SKIN	MT-TA--MT-TC	4	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0.0332	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IPC298_SKIN	1	1	0.0996	FALSE	462	80	0	856	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND4--MT-ATP8	4	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	13872	1950	0	0	0.0664	0.0166	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IPC298_SKIN	0	0	0.083	FALSE	231	204	14	283	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND4--MT-CO2	4	1	MT-ND4	1222	chrM:10981:+	MT-CO2	5514	chrM:7721:+	INCL_NON_REF_SPLICE	YES	13155	7382	0	0	0.0664	0.0166	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IPC298_SKIN	0	0	0.083	FALSE	5	1	0	19	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND4--MT-CO2	4	1	MT-ND4	1222	chrM:10981:+	MT-CO2	5527	chrM:7734:+	INCL_NON_REF_SPLICE	NO	13155	9172	0	0	0.0664	0.0166	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IPC298_SKIN	0	0	0.083	FALSE	5	1	0	19	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND4--MT-CO2	4	1	MT-ND4	1209	chrM:10968:+	MT-CO2	5522	chrM:7729:+	INCL_NON_REF_SPLICE	NO	12965	8452	0	0	0.0664	0.0166	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IPC298_SKIN	0	0	0.083	FALSE	5	1	0	19	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND4--MT-CO2	3	5	MT-ND4	1471	chrM:11230:+	MT-CO2	5416	chrM:7623:+	INCL_NON_REF_SPLICE	YES	18540	0	0	1	0.0498	0.083	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IPC298_SKIN	0	1	0.1328	FALSE	5	1	0	19	0	FALSE	ACH-000915
IPC298_SKIN	RP11-444D3.1--SOX5	3	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	1	6	0.89	0.57	0.0498	0.083	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	IPC298_SKIN	0.57	0.89	0.1328	TRUE	274	363	69	150	0	FALSE	ACH-000915
IPC298_SKIN	TIMP3--MT-ND4L	4	1	TIMP3	5620	chr22:33255391:+	MT-ND4L	12342	chrM:10552:+	INCL_NON_REF_SPLICE	YES	7483	1	0	0.83	0.0664	0.0166	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IPC298_SKIN	0	0.83	0.083	FALSE	0	0	0	2	0	FALSE	ACH-000915
IPC298_SKIN	MT-ATP6--MT-CO1	4	0	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IPC298_SKIN	1	1	0.0664	FALSE	182	97	9	327	0	FALSE	ACH-000915
IPC298_SKIN	MT-ATP6--MT-CO1	4	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IPC298_SKIN	1	1	0.0664	FALSE	183	104	9	328	0	FALSE	ACH-000915
IPC298_SKIN	AP003900.6--AC008132.1	1	11	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	2	1	0.86	0.92	0.0166	0.1827	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	IPC298_SKIN	0.86	0.92	0.1993	TRUE	0	0	0	11	0	TRUE	ACH-000915
IPC298_SKIN	MT-ND4--MT-ATP8	3	3	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	13304	0	0	1	0.0498	0.0498	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IPC298_SKIN	0	1	0.0996	FALSE	231	204	14	283	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND4--MT-ATP8	3	3	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	NO	13155	515	0	0.01	0.0498	0.0498	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IPC298_SKIN	0	0.01	0.0996	FALSE	231	204	14	283	0	FALSE	ACH-000915
IPC298_SKIN	MT-TA--MT-TC	3	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0498	0.0498	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IPC298_SKIN	1	1	0.0996	FALSE	462	80	0	856	0	FALSE	ACH-000915
IPC298_SKIN	MT-ATP6--MT-CO1	3	2	MT-ATP6	1462	chrM:8988:+	MT-CO1	5224	chrM:6446:+	INCL_NON_REF_SPLICE	YES	8589	22013	0	0	0.0498	0.0332	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IPC298_SKIN	0	0	0.083	FALSE	183	104	9	328	0	FALSE	ACH-000915
IPC298_SKIN	MT-ATP6--MT-CO1	3	1	MT-ATP6	1313	chrM:8839:+	MT-CO1	5211	chrM:6433:+	INCL_NON_REF_SPLICE	YES	15947	21980	0	0	0.0498	0.0166	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IPC298_SKIN	0	0	0.0664	FALSE	183	104	9	328	0	FALSE	ACH-000915
IPC298_SKIN	MT-ND4--MT-CO2	3	1	MT-ND4	1220	chrM:10979:+	MT-CO2	5458	chrM:7665:+	INCL_NON_REF_SPLICE	YES	13155	0	0	1	0.0498	0.0166	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IPC298_SKIN	0	1	0.0664	FALSE	5	1	0	19	0	FALSE	ACH-000915
IPC298_SKIN	VAT1--MT-ND4L	3	1	VAT1	7695	chr17:41167931:-	MT-ND4L	12006	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1730	0	0	1	0.0498	0.0166	VAT1->chr17:41166622-41177140:-,vesicle_amine_transport_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IPC298_SKIN	0	1	0.0664	FALSE	0	0	0	5	0	FALSE	ACH-000915
IPC298_SKIN	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0498	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	IPC298_SKIN	1	1	0.0498	TRUE	22	156	2	142	0	FALSE	ACH-000915
IPC298_SKIN	SLC1A5--MT-ND4L	3	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0498	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IPC298_SKIN	1	1	0.0498	FALSE	0	0	0	189	0	FALSE	ACH-000915
IPC298_SKIN	SLC39A11--LINC00511	2	3	SLC39A11	10840	chr17:70943870:-	LINC00511	31383	chr17:70599947:-	ONLY_REF_SPLICE	YES	149	4	0.03	0.56	0.0332	0.0498	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	IPC298_SKIN	0.03	0.56	0.083	FALSE	0	0	0	1	0	FALSE	ACH-000915
IPC298_SKIN	GPR176--FSIP1	2	2	GPR176	2038	chr15:40212056:-	FSIP1	27002	chr15:40005782:-	ONLY_REF_SPLICE	YES	28	2	0.12	0.67	0.0332	0.0332	NEIGHBORS[16202],GPR176->G_protein-coupled_receptor_176,chr15:40091233-40213093:-,FSIP1->chr15:39892232-40075031:-,fibrous_sheath_interacting_protein_1	IPC298_SKIN	0.12	0.67	0.0664	FALSE	0	0	0	1	0	FALSE	ACH-000915
IPC298_SKIN	MMP17--NOC4L	2	0	MMP17	1261	chr12:132313198:+	NOC4L	19756	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	GTEx_FI:{Brain=[count:15=pct:2.3]},MMP17->chr12:132312938-132336328:+,matrix_metallopeptidase_17,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	IPC298_SKIN	1	1	0.0332	TRUE	7	45	0	7	0	FALSE	ACH-000915
IPC298_SKIN	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	IPC298_SKIN	1	1	0.0332	FALSE	292	1546	117	613	0	FALSE	ACH-000915
IPC298_SKIN	POLR2F--MXI1	2	0	POLR2F	12042	chr22:38382319:+	MXI1	26461	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Hippocampus=1,Nerve_-_Tibial=1},POLR2F->chr22:38348614-38437922:+,polymerase_(RNA)_II_subunit_F,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	IPC298_SKIN	1	1	0.0332	TRUE	2	2	0	1	0	FALSE	ACH-000915
IPC298_SKIN	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0.0664	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	IPC298_SKIN	1	1	0.083	FALSE	515	4851	409	746	0	FALSE	ACH-000915
IPC298_SKIN	SDCBP--PTTG1	2	0	SDCBP	4943	chr8:59477625:+	PTTG1	17826	chr5:159849309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein,PTTG1->Oncogene{Bushman},chr5:159848829-159855748:+,pituitary_tumor-transforming_1	IPC298_SKIN	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	TXNDC9--EIF5B	2	0	TXNDC9	3623	chr2:99952702:-	EIF5B	16990	chr2:99980108:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	NEIGHBORS_OVERLAP:-:+:[3349],TXNDC9->chr2:99935445-99957165:-,thioredoxin_domain_containing_9,EIF5B->chr2:99953816-100017789:+,eukaryotic_translation_initiation_factor_5B	IPC298_SKIN	1	1	0.0332	FALSE	0	0	0	1	0	FALSE	ACH-000915
IPC298_SKIN	AP003900.6--AC008132.1	1	3	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	2	6	0.67	0.4	0.0166	0.0498	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	IPC298_SKIN	0.4	0.67	0.0664	TRUE	0	0	0	13	0	TRUE	ACH-000915
IPC298_SKIN	CEP89--CTC-360P9.1	1	3	CEP89	14040	chr19:33422335:-	CTC-360P9.1	30449	chr19:32377884:-	ONLY_REF_SPLICE	YES	20	2	0.17	0.67	0.0166	0.0498	CEP89->centrosomal_protein_89,chr19:33369902-33462897:-,CTC-360P9.1->chr19:32377610-32399190:-	IPC298_SKIN	0.17	0.67	0.0664	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	FAM21C--ZNF248	1	3	FAM21C	18194	chr10:46261258:+	ZNF248	35620	chr10:38145265:-	ONLY_REF_SPLICE	NO	53	19	0.07	0.17	0.0166	0.0498	FAM21C->chr10:46222648-46288409:+,family_with_sequence_similarity_21_member_C,ZNF248->chr10:38091751-38147034:-,zinc_finger_protein_248	IPC298_SKIN	0.07	0.17	0.0664	TRUE	0	0	0	1	0	TRUE	ACH-000915
IPC298_SKIN	SCARB1--UBC	1	3	SCARB1	10920	chr12:125298748:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	774	52	0.01	0.07	0.0166	0.0498	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	IPC298_SKIN	0.01	0.07	0.0664	FALSE	1	0	0	5	0	FALSE	ACH-000915
IPC298_SKIN	SLC39A11--LINC00511	1	3	SLC39A11	10819	chr17:70943891:-	LINC00511	31383	chr17:70599947:-	ONLY_REF_SPLICE	YES	139	4	0.03	0.5	0.0166	0.0498	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	IPC298_SKIN	0.03	0.5	0.0664	FALSE	0	0	0	1	0	FALSE	ACH-000915
IPC298_SKIN	FAM21C--ZNF248	1	2	FAM21C	18194	chr10:46261258:+	ZNF248	36662	chr10:38127039:-	ONLY_REF_SPLICE	NO	53	23	0.05	0.12	0.0166	0.0332	FAM21C->chr10:46222648-46288409:+,family_with_sequence_similarity_21_member_C,ZNF248->chr10:38091751-38147034:-,zinc_finger_protein_248	IPC298_SKIN	0.05	0.12	0.0498	TRUE	0	0	0	1	0	FALSE	ACH-000915
IPC298_SKIN	LDLRAD3--PRR5L	1	2	LDLRAD3	5673	chr11:36120011:+	PRR5L	20830	chr11:36350668:+	ONLY_REF_SPLICE	YES	107	2	0.03	0.6	0.0166	0.0332	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	IPC298_SKIN	0.03	0.6	0.0498	FALSE	2	24	3	12	0	FALSE	ACH-000915
IPC298_SKIN	SLC39A11--LINC00511	1	2	SLC39A11	10819	chr17:70943891:-	LINC00511	39209	chr17:70427365:-	ONLY_REF_SPLICE	YES	139	134	0.02	0.02	0.0166	0.0332	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	IPC298_SKIN	0.02	0.02	0.0498	FALSE	0	3	0	4	0	FALSE	ACH-000915
IPC298_SKIN	CANX--SLC18B1	1	1	CANX	11365	chr5:179137066:+	SLC18B1	26199	chr6:133118260:-	ONLY_REF_SPLICE	YES	910	25	0	0.07	0.0166	0.0166	CANX->calnexin,chr5:179105629-179157926:+,SLC18B1->chr6:133090509-133119701:-,solute_carrier_family_18_member_B1	IPC298_SKIN	0	0.07	0.0332	FALSE	0	0	0	1	0	FALSE	ACH-000915
IPC298_SKIN	EXOC6--MMS19	1	1	EXOC6	26020	chr10:94774024:+	MMS19	33927	chr10:99243908:-	ONLY_REF_SPLICE	NO	28	76	0.07	0.03	0.0166	0.0166	EXOC6->chr10:94590935-94819250:+,exocyst_complex_component_6,MMS19->MMS19_homolog,_cytosolic_iron-sulfur_assembly_component,chr10:99218081-99258551:-	IPC298_SKIN	0.03	0.07	0.0332	TRUE	0	0	0	1	0	FALSE	ACH-000915
IPC298_SKIN	EXOC6--MMS19	1	1	EXOC6	27133	chr10:94816793:+	MMS19	33927	chr10:99243908:-	ONLY_REF_SPLICE	NO	28	76	0.07	0.03	0.0166	0.0166	EXOC6->chr10:94590935-94819250:+,exocyst_complex_component_6,MMS19->MMS19_homolog,_cytosolic_iron-sulfur_assembly_component,chr10:99218081-99258551:-	IPC298_SKIN	0.03	0.07	0.0332	TRUE	0	0	0	1	0	FALSE	ACH-000915
IPC298_SKIN	FAM126A--KLHL7	1	1	FAM126A	1206	chr7:23053544:-	KLHL7	24374	chr7:23163396:+	ONLY_REF_SPLICE	YES	283	107	0.01	0.02	0.0166	0.0166	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},LOCAL_INVERSION:-:+:[91604],FAM126A->chr7:22980878-23053749:-,family_with_sequence_similarity_126_member_A,KLHL7->chr7:23145353-23217533:+,kelch_like_family_member_7	IPC298_SKIN	0.01	0.02	0.0332	FALSE	0	0	0	1	0	FALSE	ACH-000915
IPC298_SKIN	FAM210A--VAPA	1	1	FAM210A	1335	chr18:13726328:-	VAPA	25645	chr18:9950392:+	ONLY_REF_SPLICE	YES	320	496	0.01	0	0.0166	0.0166	FAM210A->chr18:13663346-13726662:-,family_with_sequence_similarity_210_member_A,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	IPC298_SKIN	0	0.01	0.0332	FALSE	0	0	0	1	0	FALSE	ACH-000915
IPC298_SKIN	SNAP29--PRDM10	1	1	SNAP29	1365	chr22:21213635:+	PRDM10	34395	chr11:129782120:-	ONLY_REF_SPLICE	YES	207	10	0.01	0.17	0.0166	0.0166	SNAP29->chr22:21213271-21245506:+,synaptosome_associated_protein_29kDa,PRDM10->PR_domain_10,chr11:129769601-129872730:-	IPC298_SKIN	0.01	0.17	0.0332	FALSE	0	0	0	1	0	FALSE	ACH-000915
IPC298_SKIN	SNHG8--SKI	1	1	SNHG8	1429	chr4:119200292:+	SKI	9424	chr1:2234417:+	ONLY_REF_SPLICE	YES	211	68	0.01	0.03	0.0166	0.0166	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	IPC298_SKIN	0.01	0.03	0.0332	FALSE	0	1	0	2	0	FALSE	ACH-000915
IPC298_SKIN	TULP4--RP11-732M18.3	1	1	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	NO	19	4	0.1	0.33	0.0166	0.0166	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	IPC298_SKIN	0.1	0.33	0.0332	TRUE	126	140	6	21	0	FALSE	ACH-000915
IPC298_SKIN	ZNF503-AS2--TSPAN14	1	1	ZNF503-AS2	2261	chr10:77162019:+	TSPAN14	15702	chr10:82248973:+	ONLY_REF_SPLICE	NO	11	312	0.15	0.01	0.0166	0.0166	ZNF503-AS2->ZNF503_antisense_RNA_2,chr10:77160759-77168738:+,TSPAN14->chr10:82213922-82292879:+,tetraspanin_14	IPC298_SKIN	0.01	0.15	0.0332	FALSE	0	0	0	1	0	FALSE	ACH-000915
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	101	47	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	8	0	0.95	1	1.3285	0.6182	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	1.9467	TRUE	0	5	0	45	5	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	80	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0523	0.2368	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.2891	TRUE	508	994	45	981	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	55	54	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	152	29	0.42	0.79	0.7235	0.7103	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.79	1.4338	TRUE	267	562	48	632	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32A--PTMA	61	2	ANP32A	14119	chr15:69072800:-	PTMA	24061	chr2:232576649:+	INCL_NON_REF_SPLICE	NO	309	4913	0.17	0.01	0.8024	0.0263	ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.17	0.8287	FALSE	0	0	0	2	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	48	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	157	5	0.25	0.91	0.6314	0.0395	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.91	0.6709	TRUE	519	3926	326	965	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	34	41	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	155	33	0.33	0.69	0.4472	0.5393	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.69	0.9865	TRUE	267	562	48	632	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	34	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4472	0.0395	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4867	FALSE	462	80	0	856	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-27--AC096579.7	1	112	IGKV1-27	1086	chr2:89513328:-	AC096579.7	7228	chr2:89157196:-	ONLY_REF_SPLICE	YES	616	0	0.16	1	0.0132	1.4732	GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},IGKV1-27->chr2:89512908-89513413:-,immunoglobulin_kappa_variable_1-27,AC096579.7->chr2:89130700-89165653:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	1.4864	TRUE	3	4	2	1	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	29	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3815	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3815	TRUE	0	0	0	518	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSNK1G2--DOT1L	27	3	CSNK1G2	1230	chr19:1941417:+	DOT1L	17397	chr19:2180712:+	ONLY_REF_SPLICE	YES	1	12	0.97	0.71	0.3551	0.0395	CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.97	0.3946	TRUE	0	0	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BICD1--OVCH1	21	11	BICD1	4185	chr12:32369393:+	OVCH1	34533	chr12:29630411:-	INCL_NON_REF_SPLICE	YES	32	0	0.5	1	0.2762	0.1447	BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,OVCH1->chr12:29565407-29650619:-,ovochymase_1	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.4209	TRUE	0	0	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	42	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	155	33	0.23	0.59	0.0658	0.5525	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.59	0.6183	TRUE	267	562	48	632	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--B2M	13	2	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	4585	0	0	1	0.171	0.0263	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1973	TRUE	0	0	0	28	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.171	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.171	FALSE	499	1288	110	792	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	12	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1578	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1578	TRUE	0	0	0	434	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1184	0.1184	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2368	FALSE	499	1288	110	792	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	5	24	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	8	9	0.78	0.76	0.0658	0.3157	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.78	0.3815	TRUE	0	1	0	20	1	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STK38L--FAR2	9	8	STK38L	8122	chr12:27455121:+	FAR2	29555	chr12:29423345:+	ONLY_REF_SPLICE	YES	149	0	0.1	1	0.1184	0.1052	STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like,FAR2->chr12:29302036-29493913:+,fatty_acyl-CoA_reductase_2	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.2236	TRUE	0	0	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC027612.3--AP000345.1	10	3	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	20	0	0.39	1	0.1315	0.0395	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.171	TRUE	0	0	0	11	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	8	8	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	8	23	0.67	0.41	0.1052	0.1052	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.67	0.2104	TRUE	0	1	0	24	1	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	8	4	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	10	0	0.55	1	0.1052	0.0526	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.1578	TRUE	0	3	0	38	3	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	7	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0921	0.0658	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1579	FALSE	407	2205	196	549	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	6	5	AP003900.6	1122	chr21:11169841:+	AC011718.2	10130	chr22:20656894:-	INCL_NON_REF_SPLICE	YES	10	0	0.52	1	0.0789	0.0658	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	1	0.1447	TRUE	0	0	0	11	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC027612.3--AP000345.1	6	3	AC027612.3	3881	chr2:91893844:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0789	0.0395	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1184	TRUE	0	0	0	11	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	APBA3--TJP3	6	3	APBA3	2777	chr19:3759687:-	TJP3	30426	chr19:3750136:+	ONLY_REF_SPLICE	YES	32	8	0.22	0.53	0.0789	0.0395	LOCAL_INVERSION:-:+:[6],APBA3->amyloid_beta_precursor_protein_binding_family_A_member_3,chr19:3750817-3761697:-,TJP3->chr19:3708107-3750811:+,tight_junction_protein_3	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.53	0.1184	TRUE	0	0	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0.0395	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1184	FALSE	462	80	0	856	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	6	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0789	TRUE	0	0	0	81	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0789	FALSE	499	1288	110	792	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	5	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.89	0.89	0.0658	0.0395	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.89	0.1053	FALSE	515	4851	409	746	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32A--PTMA	5	2	ANP32A	11767	chr15:69075318:-	PTMA	24022	chr2:232576610:+	INCL_NON_REF_SPLICE	NO	444	5350	0.02	0	0.0658	0.0263	ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0921	FALSE	0	0	0	2	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2C--CTBP2P1	5	1	KMT2C	8616	chr7:151970790:-	CTBP2P1	74892	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	48	0	0.11	1	0.0658	0.0132	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.079	TRUE	0	1	0	4	1	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0.1184	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1579	FALSE	499	1288	110	792	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	5	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	812	0	0.01	1	0.0658	0.0132	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.079	FALSE	0	0	0	189	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32A--PTMA	4	2	ANP32A	14136	chr15:69072783:-	PTMA	23488	chr2:232576076:+	INCL_NON_REF_SPLICE	NO	238	5330	0.02	0	0.0526	0.0263	ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0789	FALSE	0	0	0	2	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	4	2	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	793	0	0.01	1	0.0526	0.0263	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0789	FALSE	0	0	0	189	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	3	5	AP003900.6	1122	chr21:11169841:+	AC011718.2	10127	chr22:20656897:-	INCL_NON_REF_SPLICE	YES	10	0	0.44	1	0.0395	0.0658	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.1053	TRUE	0	0	0	11	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	4	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0526	0.0132	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.0658	FALSE	20	187	4	79	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0395	0.0658	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1053	FALSE	499	1288	110	792	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	4	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0526	FALSE	1	11	0	34	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0526	FALSE	462	80	0	856	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0395	0.0395	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.079	FALSE	467	2173	244	435	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32A--PTMA	3	2	ANP32A	14449	chr15:69072470:-	PTMA	23492	chr2:232576080:+	INCL_NON_REF_SPLICE	YES	225	5188	0.02	0	0.0395	0.0263	ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0658	FALSE	0	0	0	2	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32A--PTMA	3	2	ANP32A	14449	chr15:69072470:-	PTMA	24052	chr2:232576640:+	INCL_NON_REF_SPLICE	NO	225	5040	0.02	0	0.0395	0.0263	ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0658	FALSE	0	0	0	2	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32A--PTMA	3	2	ANP32A	11758	chr15:69075327:-	PTMA	24031	chr2:232576619:+	INCL_NON_REF_SPLICE	NO	484	5362	0.01	0	0.0395	0.0263	ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0658	FALSE	0	0	0	2	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	2	6	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	10	0	0.44	1	0.0263	0.0789	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.1052	TRUE	0	0	0	21	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32A--PTMA	3	1	ANP32A	11790	chr15:69075295:-	PTMA	24087	chr2:232576675:+	INCL_NON_REF_SPLICE	YES	466	5063	0.01	0	0.0395	0.0132	ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0527	FALSE	0	0	0	2	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	3	1	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0.0132	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0527	TRUE	5	4	0	46	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32A--PTMA	3	0	ANP32A	10566	chr15:69076736:-	PTMA	24574	chr2:232577162:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0395	0	ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0395	TRUE	0	0	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STK38L--FAR2	1	8	STK38L	8122	chr12:27455121:+	FAR2	26652	chr12:29324311:+	ONLY_REF_SPLICE	YES	149	0	0.06	1	0.0132	0.1052	STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like,FAR2->chr12:29302036-29493913:+,fatty_acyl-CoA_reductase_2	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.1184	TRUE	0	0	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	2	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0263	0.0132	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.0395	FALSE	33	240	4	98	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERC1--WNT5B	2	1	ERC1	8140	chr12:1192746:+	WNT5B	51638	chr12:1740464:+	ONLY_REF_SPLICE	YES	38	1	0.07	0.75	0.0263	0.0132	NEIGHBORS[33958],ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,WNT5B->Wnt_family_member_5B,chr12:1639057-1756409:+	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.75	0.0395	FALSE	0	0	0	1	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MFI2--MYC	2	0	MFI2	19362	chr3:196730772:-	MYC	28244	chr8:128750497:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	MFI2->chr3:196715492-196756687:-,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	2	0	NOC4L	2218	chr12:132630210:+	FBRSL1	23658	chr12:133144067:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0263	TRUE	2	2	0	6	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--SNHG17	2	0	RCC1	2175	chr1:28834672:+	SNHG17	26276	chr20:37050888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNHG17->chr20:37049235-37063996:-,small_nucleolar_RNA_host_gene_17	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0263	TRUE	0	1	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-344E13.3--UBBP4	1	4	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	15	0	0.25	1	0.0132	0.0526	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0658	TRUE	23	13	0	54	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD5--CDC42SE2	2	0	SMAD5	1118	chr5:135468651:+	CDC42SE2	31711	chr5:130721236:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	SMAD5->SMAD_family_member_5,chr5:135468534-135524435:+,CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSNK1G2--DOT1L	1	3	CSNK1G2	2379	chr19:1942612:+	DOT1L	17397	chr19:2180712:+	ONLY_REF_SPLICE	YES	1	12	0.8	0.25	0.0132	0.0395	CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.8	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	1	2	AP003900.6	1122	chr21:11169841:+	AC011718.2	11864	chr22:20653813:-	ONLY_REF_SPLICE	NO	10	3	0.23	0.5	0.0132	0.0263	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.5	0.0395	TRUE	0	3	0	38	3	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD38--DAZAP1	1	1	CD38	1373	chr4:15780270:+	DAZAP1	21439	chr19:1417499:+	ONLY_REF_SPLICE	NO	1913	316	0	0.01	0.0132	0.0132	CD38->CD38_molecule,chr4:15779898-15854853:+,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	1	1	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0132	0.0132	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0264	TRUE	5	12	0	42	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YAF2--PPHLN1	1	1	YAF2	1751	chr12:42631401:-	PPHLN1	35786	chr12:42768665:+	ONLY_REF_SPLICE	YES	150	423	0.01	0	0.0132	0.0132	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=2,Pancreas=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[98],YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,PPHLN1->chr12:42632249-42853517:+,periphilin_1	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0264	FALSE	1	0	0	1	0	FALSE	ACH-000157
A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YAF2--PPHLN1	1	1	YAF2	3318	chr12:42629416:-	PPHLN1	43594	chr12:42835117:+	ONLY_REF_SPLICE	NO	151	299	0.01	0.01	0.0132	0.0132	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=2,Pancreas=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[98],YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,PPHLN1->chr12:42632249-42853517:+,periphilin_1	A4FUK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000157
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	67	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9417	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9417	TRUE	0	0	0	518	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	49	6	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6887	0.0843	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.773	TRUE	508	994	45	981	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	26	28	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	126	31	0.3	0.64	0.3655	0.3936	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.64	0.7591	TRUE	267	562	48	632	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	32	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	120	4	0.22	0.89	0.4498	0.0141	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.89	0.4639	TRUE	519	3926	326	965	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	24	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3373	0.0281	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3654	FALSE	462	80	0	856	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	22	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3092	0.0422	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3514	FALSE	499	1288	110	792	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	16	17	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	121	32	0.21	0.51	0.2249	0.2389	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.51	0.4638	TRUE	267	562	48	632	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UAP1--IGJ	19	0	UAP1	1247	chr1:162531569:+	IGJ	19183	chr4:71532237:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2671	0	UAP1->UDP-N-acetylglucosamine_pyrophosphorylase_1,chr1:162531323-162569627:+,IGJ->chr4:71521258-71547534:-	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2671	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	16	2	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	5504	0	0	1	0.2249	0.0281	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.253	TRUE	0	0	0	100	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1546	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1546	TRUE	0	0	0	434	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	8	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1124	0.1546	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.267	FALSE	407	2205	196	549	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.1124	0.0562	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1686	FALSE	499	1288	110	792	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABI1--IRAK3	8	3	ABI1	9263	chr10:27054147:-	IRAK3	23843	chr12:66597491:+	ONLY_REF_SPLICE	YES	50	0	0.18	1	0.1124	0.0422	{Klijn_CCL:Lymphoid=1},ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,IRAK3->chr12:66582659-66648402:+,interleukin_1_receptor_associated_kinase_3	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.1546	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	6	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0843	0.1406	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.2249	FALSE	515	4851	409	746	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	8	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1124	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1124	TRUE	0	0	0	518	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	18	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	121	31	0.15	0.4	0.0422	0.253	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.4	0.2952	TRUE	267	562	48	632	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	7	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0984	0.0281	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.1265	TRUE	0	1	0	84	1	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	6	2	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1261	1	0.01	0.0843	0.0281	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1124	FALSE	101	855	57	72	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	5	2	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0703	0.0281	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.0984	TRUE	0	1	0	84	1	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	5	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0703	FALSE	101	855	57	72	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC27A5--ZBTB45	5	0	SLC27A5	12854	chr19:58991926:-	ZBTB45	20317	chr19:59029040:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0	LOCAL_REARRANGEMENT:-:[1117],SLC27A5->chr19:58990879-59023780:-,solute_carrier_family_27_member_5,ZBTB45->chr19:59024897-59050278:-,zinc_finger_and_BTB_domain_containing_45	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0703	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0.0422	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0984	FALSE	499	1288	110	792	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	3	6	EEF2	8863	chr19:3977449:-	RPS28	13639	chr19:8386422:+	INCL_NON_REF_SPLICE	YES	5020	0	0	1	0.0422	0.0843	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1265	TRUE	0	0	0	100	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	4	2	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0562	0.0281	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0843	TRUE	0	1	0	84	1	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2152M20.2--GOLPH3	4	1	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	2	43	0.71	0.1	0.0562	0.0141	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.71	0.0703	TRUE	10	26	2	24	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	H2AFZ--IGJ	4	1	H2AFZ	2487	chr4:100870059:-	IGJ	7805	chr4:71532231:-	INCL_NON_REF_SPLICE	YES	1595	252	0	0.02	0.0562	0.0141	H2AFZ->H2A_histone_family_member_Z,chr4:100869243-100871545:-,IGJ->chr4:71521258-71547534:-	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0703	FALSE	0	0	0	1	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0.0141	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0703	FALSE	462	80	0	856	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZCCHC10--HSPA4	4	1	ZCCHC10	2178	chr5:132358533:-	HSPA4	13947	chr5:132400672:+	ONLY_REF_SPLICE	YES	29	135	0.15	0.04	0.0562	0.0141	LOCAL_INVERSION:-:+:[25358],ZCCHC10->chr5:132332677-132362296:-,zinc_finger_CCHC-type_containing_10,HSPA4->chr5:132387654-132442141:+,heat_shock_protein_family_A_(Hsp70)_member_4	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.15	0.0703	TRUE	0	0	0	2	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRI3BP--UBC	4	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0562	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0562	TRUE	5	99	5	34	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0562	TRUE	0	0	0	81	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0562	TRUE	0	0	0	434	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	11	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0141	0.1546	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1687	FALSE	467	2173	244	435	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0141	0.1546	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1687	FALSE	275	511	55	178	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	3	2	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	2381	1	0	0.0422	0.0281	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0703	FALSE	101	855	57	72	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0.0281	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0703	FALSE	462	80	0	856	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-459F4.3--PICALM	3	0	CTC-459F4.3	1147	chr19:28284517:+	PICALM	16683	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0422	0	CTC-459F4.3->chr19:28284371-28409771:+,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0422	TRUE	0	0	0	81	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGJ--RP11-278C7.1	3	0	IGJ	5243	chr4:71527894:-	RP11-278C7.1	11831	chr12:32879570:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	IGJ->chr4:71521258-71547534:-,RP11-278C7.1->chr12:32879317-32880321:-	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABI1--IRAK3	2	1	ABI1	9263	chr10:27054147:-	IRAK3	25026	chr12:66603236:+	ONLY_REF_SPLICE	YES	50	1	0.06	0.75	0.0281	0.0141	{Klijn_CCL:Lymphoid=1},ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,IRAK3->chr12:66582659-66648402:+,interleukin_1_receptor_associated_kinase_3	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.75	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32E--ARNT	2	0	ANP32E	1424	chr1:150208081:-	ARNT	16890	chr1:150830936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,ARNT->Oncogene{Bushman},aryl_hydrocarbon_receptor_nuclear_translocator,chr1:150782181-150849244:-	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BTBD19--TANGO2	2	0	BTBD19	4735	chr1:45278194:+	TANGO2	22888	chr22:20048697:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	BTBD19->BTB_domain_containing_19,Oncogene{Bushman},chr1:45274154-45281257:+,TANGO2->chr22:20004537-20053449:+,transport_and_golgi_organization_2_homolog	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--C12orf23	2	0	CPSF6	11046	chr12:69656342:+	C12orf23	24908	chr12:107364883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C12orf23->chr12:107349497-107372556:+	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2152M20.2--GOLPH3	2	0	CTD-2152M20.2	1447	chr5:32121601:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0281	TRUE	6	16	0	6	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--CDK10	2	0	PROSC	2996	chr8:37623873:+	CDK10	16077	chr16:89753997:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CDK10->chr16:89747145-89762772:+,cyclin-dependent_kinase_10	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--GTPBP2	2	0	RABGAP1L	14961	chr1:174274265:+	GTPBP2	56348	chr6:43594685:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,GTPBP2->GTP_binding_protein_2,chr6:43573053-43596899:-	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RREB1--TXNDC5	2	0	RREB1	1464	chr6:7108293:+	TXNDC5	37525	chr6:7904956:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	RREB1->Oncogene{Bushman},chr6:7107830-7252213:+,ras_responsive_element_binding_protein_1,TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SBNO2--DAZAP1	2	0	SBNO2	1112	chr19:1174171:-	DAZAP1	32349	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	GTEx_FI:{Skin=[count:2=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Lung=1,Minor_Salivary_Gland=1,Liver=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0281	TRUE	4	1	0	5	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--CTBP1	1	1	UVSSA	8854	chr4:1360219:+	CTBP1	32260	chr4:1222131:-	ONLY_REF_SPLICE	YES	22	254	0.08	0.01	0.0141	0.0141	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.08	0.0282	FALSE	1	0	0	2	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--CTBP1	1	1	UVSSA	7499	chr4:1349033:+	CTBP1	24040	chr4:1235307:-	ONLY_REF_SPLICE	YES	27	31	0.07	0.06	0.0141	0.0141	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.07	0.0282	TRUE	23	5	0	14	0	FALSE	ACH-000564
KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAG--CLK2	1	1	YWHAG	1310	chr7:75988039:-	CLK2	12016	chr1:155240768:-	ONLY_REF_SPLICE	YES	548	48	0	0.04	0.0141	0.0141	YWHAG->chr7:75956116-75988348:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_gamma,CLK2->CDC_like_kinase_2,chr1:155232659-155248282:-	KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0282	FALSE	0	0	0	1	0	FALSE	ACH-000564
ECC12_STOMACH	SBF2--RNF141	208	21	SBF2	2279	chr11:10215449:-	RNF141	67634	chr11:10546920:-	ONLY_REF_SPLICE	YES	9	43	0.96	0.84	1.6288	0.1645	SBF2->SET_binding_factor_2,chr11:9800214-10315754:-,RNF141->chr11:10533225-10562777:-,ring_finger_protein_141	ECC12_STOMACH	0.84	0.96	1.7933	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	RPL9--AFAP1	119	40	RPL9	3543	chr4:39458026:-	AFAP1	10330	chr4:7873807:-	ONLY_REF_SPLICE	YES	673	3	0.19	0.98	0.9319	0.3132	RPL9->chr4:39455744-39460568:-,ribosomal_protein_L9,AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-	ECC12_STOMACH	0.19	0.98	1.2451	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	RP11-123O10.4--GRIP1	111	17	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	2	1	0.98	0.8692	0.1331	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ECC12_STOMACH	0.98	1	1.0023	FALSE	416	2512	207	587	0	FALSE	ACH-000225
ECC12_STOMACH	ZNF490--SYCE2	100	33	ZNF490	7062	chr19:12719972:-	SYCE2	20933	chr19:13015480:-	ONLY_REF_SPLICE	YES	5	10	0.96	0.93	0.7831	0.2584	ZNF490->chr19:12688775-12750912:-,zinc_finger_protein_490,SYCE2->chr19:13009600-13030090:-,synaptonemal_complex_central_element_protein_2	ECC12_STOMACH	0.93	0.96	1.0415	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	TIMM23B--LINC00843	91	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7126	0.1175	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ECC12_STOMACH	1	1	0.8301	TRUE	508	994	45	981	0	FALSE	ACH-000225
ECC12_STOMACH	PAPSS2--MINPP1	79	36	PAPSS2	8343	chr10:89481527:+	MINPP1	25393	chr10:89311839:+	ONLY_REF_SPLICE	YES	81	111	0.59	0.51	0.6186	0.2819	PAPSS2->3'-phosphoadenosine_5'-phosphosulfate_synthase_2,chr10:89419370-89507462:+,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	ECC12_STOMACH	0.51	0.59	0.9005	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	LINC01014--KCNMB2	76	12	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	29	12	0.75	0.88	0.5952	0.094	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	ECC12_STOMACH	0.75	0.88	0.6892	FALSE	11	60	26	37	0	FALSE	ACH-000225
ECC12_STOMACH	PAPSS2--MINPP1	67	32	PAPSS2	7328	chr10:89475600:+	MINPP1	25393	chr10:89311839:+	ONLY_REF_SPLICE	YES	63	111	0.61	0.47	0.5247	0.2506	PAPSS2->3'-phosphoadenosine_5'-phosphosulfate_synthase_2,chr10:89419370-89507462:+,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	ECC12_STOMACH	0.47	0.61	0.7753	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	DUSP10--BAGE2	71	15	DUSP10	1196	chr1:221915323:-	BAGE2	16957	chr21:11058323:-	ONLY_REF_SPLICE	YES	7	1	0.92	0.99	0.556	0.1175	DUSP10->Oncogene{Bushman},chr1:221874766-221915518:-,dual_specificity_phosphatase_10,BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-	ECC12_STOMACH	0.92	0.99	0.6735	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	ZNF654--HMGB2	68	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5325	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	ECC12_STOMACH	1	1	0.5325	TRUE	0	0	0	518	0	FALSE	ACH-000225
ECC12_STOMACH	RP11-444D3.1--SOX5	59	16	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	6	1	0.93	0.462	0.1253	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	ECC12_STOMACH	0.93	1	0.5873	TRUE	477	1352	189	275	0	FALSE	ACH-000225
ECC12_STOMACH	RPL9--AFAP1	58	15	RPL9	2363	chr4:39459206:-	AFAP1	10330	chr4:7873807:-	ONLY_REF_SPLICE	YES	825	3	0.08	0.96	0.4542	0.1175	RPL9->chr4:39455744-39460568:-,ribosomal_protein_L9,AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-	ECC12_STOMACH	0.08	0.96	0.5717	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	NCK2--GCM1	55	24	NCK2	3175	chr2:106433070:+	GCM1	13659	chr6:53010566:-	ONLY_REF_SPLICE	YES	207	0	0.28	1	0.4307	0.1879	NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+,GCM1->chr6:52991762-53013627:-,glial_cells_missing_homolog_1	ECC12_STOMACH	0.28	1	0.6186	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	WASF3--ASTN1	54	25	WASF3	4808	chr13:27239299:+	ASTN1	41102	chr1:176863966:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.4229	0.1958	WASF3->WAS_protein_family_member_3,chr13:27131840-27263085:+,ASTN1->astrotactin_1,chr1:176826438-177134109:-	ECC12_STOMACH	0.99	1	0.6187	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	NPEPPS--RPH3AL	43	16	NPEPPS	9229	chr17:45656877:+	RPH3AL	54610	chr17:97076:-	ONLY_REF_SPLICE	YES	129	44	0.31	0.57	0.3367	0.1253	NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+,RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains)	ECC12_STOMACH	0.31	0.57	0.462	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	CADPS--PTPRG-AS1	41	21	CADPS	1791	chr3:62860264:-	PTPRG-AS1	58989	chr3:62280453:-	ONLY_REF_SPLICE	YES	67	8	0.48	0.89	0.3211	0.1645	NEIGHBORS[29017],CADPS->Ca2+_dependent_secretion_activator,chr3:62384022-62861054:-,PTPRG-AS1->PTPRG_antisense_RNA_1,chr3:62246540-62355005:-	ECC12_STOMACH	0.48	0.89	0.4856	FALSE	0	0	0	1	0	FALSE	ACH-000225
ECC12_STOMACH	TIMM23--RP11-464F9.1	46	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3602	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ECC12_STOMACH	1	1	0.3602	TRUE	519	3926	326	965	0	FALSE	ACH-000225
ECC12_STOMACH	LINC01014--KCNMB2	42	15	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	29	12	0.66	0.83	0.3289	0.1175	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	ECC12_STOMACH	0.66	0.83	0.4464	FALSE	12	33	18	33	0	FALSE	ACH-000225
ECC12_STOMACH	ACBD6--NBPF3	41	3	ACBD6	1910	chr1:180471180:-	NBPF3	35762	chr1:21801393:+	ONLY_REF_SPLICE	YES	125	11	0.26	0.8	0.3211	0.0235	ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-,NBPF3->chr1:21766621-21811498:+,neuroblastoma_breakpoint_family_member_3	ECC12_STOMACH	0.26	0.8	0.3446	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	MT-TA--MT-TC	37	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2897	0.0626	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ECC12_STOMACH	1	1	0.3523	FALSE	462	80	0	856	0	FALSE	ACH-000225
ECC12_STOMACH	GPC6--RP11-135J2.4	35	10	GPC6	4326	chr13:94482798:+	RP11-135J2.4	22133	chr1:219260002:-	ONLY_REF_SPLICE	YES	39	0	0.54	1	0.2741	0.0783	GPC6->chr13:93879095-95059655:+,glypican_6,RP11-135J2.4->chr1:219259944-219347303:-	ECC12_STOMACH	0.54	1	0.3524	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	MT-CO3--MT-ATP6	16	75	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	NO	5	0	0.95	1	0.1253	0.5873	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ECC12_STOMACH	0.95	1	0.7126	FALSE	189	492	56	216	0	FALSE	ACH-000225
ECC12_STOMACH	MT-CO3--MT-ATP6	12	66	MT-CO3	1220	chrM:9426:+	MT-ATP6	4919	chrM:8661:+	INCL_NON_REF_SPLICE	YES	5	24	0.94	0.76	0.094	0.5168	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ECC12_STOMACH	0.76	0.94	0.6108	FALSE	189	492	56	216	0	FALSE	ACH-000225
ECC12_STOMACH	GRM4--NUDT3	26	9	GRM4	4519	chr6:34100755:-	NUDT3	34911	chr6:34263462:-	ONLY_REF_SPLICE	YES	19	157	0.65	0.18	0.2036	0.0705	GRM4->chr6:33989628-34123399:-,glutamate_metabotropic_receptor_4,NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3	ECC12_STOMACH	0.18	0.65	0.2741	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	SAMD5--SASH1	23	4	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	24	1	0.53	0.96	0.1801	0.0313	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	ECC12_STOMACH	0.53	0.96	0.2114	TRUE	53	396	64	110	0	FALSE	ACH-000225
ECC12_STOMACH	MT-CO3--MT-ATP6	4	75	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	5	0	0.94	1	0.0313	0.5873	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ECC12_STOMACH	0.94	1	0.6186	FALSE	189	492	56	216	0	FALSE	ACH-000225
ECC12_STOMACH	CALM3--MT-ND4L	16	24	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1497	0	0.03	1	0.1253	0.1879	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ECC12_STOMACH	0.03	1	0.3132	FALSE	1	1	0	107	0	FALSE	ACH-000225
ECC12_STOMACH	TTBK2--TP53BP1	20	6	TTBK2	10919	chr15:43120126:-	TP53BP1	49653	chr15:43733781:-	ONLY_REF_SPLICE	YES	12	43	0.68	0.38	0.1566	0.047	TTBK2->chr15:43030932-43213007:-,tau_tubulin_kinase_2,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	ECC12_STOMACH	0.38	0.68	0.2036	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	MT-ND6--MT-TE	19	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1488	0.047	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC12_STOMACH	1	1	0.1958	FALSE	499	1288	110	792	0	FALSE	ACH-000225
ECC12_STOMACH	OR51S1--TP53I11	20	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1566	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	ECC12_STOMACH	1	1	0.1566	TRUE	402	216	10	229	0	FALSE	ACH-000225
ECC12_STOMACH	FTL--MT-CO1	19	2	FTL	1122	chr19:49468679:+	MT-CO1	6221	chrM:6546:+	INCL_NON_REF_SPLICE	YES	1033	14223	0.02	0	0.1488	0.0157	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC12_STOMACH	0	0.02	0.1645	FALSE	0	7	0	14	0	FALSE	ACH-000225
ECC12_STOMACH	ALG12--DENND6B	15	16	ALG12	7820	chr22:50297578:-	DENND6B	22241	chr22:50751054:-	INCL_NON_REF_SPLICE	YES	95	49	0.25	0.39	0.1175	0.1253	ALG12->ALG12,_alpha-1,6-mannosyltransferase,chr22:50293877-50312106:-,DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-	ECC12_STOMACH	0.25	0.39	0.2428	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	MT-ND6--MT-TE	14	19	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1096	0.1488	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC12_STOMACH	0.97	1	0.2584	FALSE	499	1288	110	792	0	FALSE	ACH-000225
ECC12_STOMACH	GUSBP2--RP11-457M11.5	17	4	GUSBP2	9031	chr6:26846479:-	RP11-457M11.5	15456	chr6:26687347:+	INCL_NON_REF_SPLICE	YES	9	5	0.7	0.81	0.1331	0.0313	GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2,RP11-457M11.5->chr6:26686469-26688192:+	ECC12_STOMACH	0.7	0.81	0.1644	TRUE	1	2	0	3	2	TRUE	ACH-000225
ECC12_STOMACH	CACNA1A--C19orf44	17	2	CACNA1A	1113	chr19:13734692:-	C19orf44	61387	chr19:16611603:+	ONLY_REF_SPLICE	YES	60	1	0.24	0.95	0.1331	0.0157	CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-,C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44	ECC12_STOMACH	0.24	0.95	0.1488	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	MT-CO3--MT-ATP6	8	38	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	4	0.98	0.92	0.0626	0.2976	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ECC12_STOMACH	0.92	0.98	0.3602	FALSE	189	492	56	216	0	FALSE	ACH-000225
ECC12_STOMACH	C15orf57--CBX3	15	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	40	33	0.38	0.42	0.1175	0.0705	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	ECC12_STOMACH	0.38	0.42	0.188	TRUE	267	562	48	632	0	FALSE	ACH-000225
ECC12_STOMACH	ALG12--DENND6B	14	9	ALG12	7571	chr22:50297827:-	DENND6B	22241	chr22:50751054:-	ONLY_REF_SPLICE	YES	83	49	0.22	0.32	0.1096	0.0705	ALG12->ALG12,_alpha-1,6-mannosyltransferase,chr22:50293877-50312106:-,DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-	ECC12_STOMACH	0.22	0.32	0.1801	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	RPL9--AFAP1	14	9	RPL9	1755	chr4:39459814:-	AFAP1	10330	chr4:7873807:-	ONLY_REF_SPLICE	YES	801	3	0.03	0.88	0.1096	0.0705	RPL9->chr4:39455744-39460568:-,ribosomal_protein_L9,AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-	ECC12_STOMACH	0.03	0.88	0.1801	TRUE	0	0	0	1	0	FALSE	ACH-000225
ECC12_STOMACH	AC123023.1--AC018359.1	16	0	AC123023.1	1065	chr3:34244800:+	AC018359.1	12826	chr3:34450753:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1253	0	NEIGHBORS_OVERLAP:+:+:[65567],AC123023.1->chr3:34244736-34310303:+,AC018359.1->chr3:34200826-34604369:+	ECC12_STOMACH	1	1	0.1253	FALSE	1	4	3	3	0	FALSE	ACH-000225
ECC12_STOMACH	PRRX2--RP11-344B5.2	16	0	PRRX2	3853	chr9:132483053:+	RP11-344B5.2	9835	chr9:132047789:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1253	0	PRRX2->Oncogene{Bushman},chr9:132427920-132484875:+,paired_related_homeobox_2,RP11-344B5.2->chr9:132044737-132048007:+	ECC12_STOMACH	1	1	0.1253	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	MT-ND1--MT-RNR2	7	33	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	9	0	0.82	1	0.0548	0.2584	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ECC12_STOMACH	0.82	1	0.3132	FALSE	114	26	4	85	0	FALSE	ACH-000225
ECC12_STOMACH	SCN8A--SLC4A8	15	1	SCN8A	23977	chr12:52168146:+	SLC4A8	48376	chr12:51834492:+	ONLY_REF_SPLICE	YES	35	18	0.31	0.47	0.1175	0.0078	LOCAL_REARRANGEMENT:+:[81070],SCN8A->chr12:51984050-52206648:+,sodium_voltage-gated_channel_alpha_subunit_8,SLC4A8->chr12:51785101-51902980:+,solute_carrier_family_4_member_8	ECC12_STOMACH	0.31	0.47	0.1253	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	AC123023.1--AC018359.1	15	0	AC123023.1	1065	chr3:34244800:+	AC018359.1	7715	chr3:34340345:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1175	0	NEIGHBORS_OVERLAP:+:+:[65567],AC123023.1->chr3:34244736-34310303:+,AC018359.1->chr3:34200826-34604369:+	ECC12_STOMACH	1	1	0.1175	FALSE	0	2	0	3	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND1--MT-RNR2	5	40	MT-ND1	1435	chrM:3741:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	23	0	0.66	1	0.0392	0.3132	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ECC12_STOMACH	0.66	1	0.3524	FALSE	114	26	4	85	0	FALSE	ACH-000225
ECC12_STOMACH	MT-CO3--MT-ATP6	8	26	MT-CO3	1051	chrM:9257:+	MT-ATP6	5333	chrM:9075:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.87	0.0626	0.2036	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ECC12_STOMACH	0.87	1	0.2662	FALSE	189	492	56	216	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND6--MT-TE	12	10	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.094	0.0783	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC12_STOMACH	1	1	0.1723	FALSE	499	1288	110	792	0	FALSE	ACH-000225
ECC12_STOMACH	MT-CO3--MT-ATP6	5	36	MT-CO3	1144	chrM:9350:+	MT-ATP6	5382	chrM:9124:+	INCL_NON_REF_SPLICE	YES	6	1	0.87	0.98	0.0392	0.2819	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ECC12_STOMACH	0.87	0.98	0.3211	FALSE	189	492	56	216	0	FALSE	ACH-000225
ECC12_STOMACH	NBPF15--WASF3	13	4	NBPF15	2950	chr1:148558286:+	WASF3	31659	chr13:27241654:+	ONLY_REF_SPLICE	YES	28	1	0.38	0.94	0.1018	0.0313	NBPF15->chr1:148555979-148596267:+,neuroblastoma_breakpoint_family_member_15,WASF3->WAS_protein_family_member_3,chr13:27131840-27263085:+	ECC12_STOMACH	0.38	0.94	0.1331	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	MT-CO3--MT-ATP6	3	43	MT-CO3	1136	chrM:9342:+	MT-ATP6	5002	chrM:8744:+	INCL_NON_REF_SPLICE	YES	5	30	0.9	0.61	0.0235	0.3367	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ECC12_STOMACH	0.61	0.9	0.3602	FALSE	189	492	56	216	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	13	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	6984	28	0	0.33	0.1018	0.0078	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	0.33	0.1096	FALSE	230	193	14	283	0	FALSE	ACH-000225
ECC12_STOMACH	AC123023.1--AC018359.1	13	0	AC123023.1	1065	chr3:34244800:+	AC018359.1	11639	chr3:34428383:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1018	0	NEIGHBORS_OVERLAP:+:+:[65567],AC123023.1->chr3:34244736-34310303:+,AC018359.1->chr3:34200826-34604369:+	ECC12_STOMACH	1	1	0.1018	FALSE	0	1	1	2	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND6--MT-TE	10	10	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0783	0.0783	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC12_STOMACH	1	1	0.1566	FALSE	499	1288	110	792	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND6--MT-TE	10	10	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0783	0.0783	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC12_STOMACH	1	1	0.1566	FALSE	499	1288	110	792	0	FALSE	ACH-000225
ECC12_STOMACH	MT-CO3--MT-ATP6	4	33	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	NO	1	19	0.97	0.66	0.0313	0.2584	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ECC12_STOMACH	0.66	0.97	0.2897	FALSE	189	492	56	216	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND6--MT-TE	3	37	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0235	0.2897	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC12_STOMACH	0.98	1	0.3132	FALSE	499	1288	110	792	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND6--MT-TE	3	37	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.0235	0.2897	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC12_STOMACH	0.93	1	0.3132	FALSE	499	1288	110	792	0	FALSE	ACH-000225
ECC12_STOMACH	MT-TA--MT-TC	10	9	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0783	0.0705	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ECC12_STOMACH	1	1	0.1488	FALSE	462	80	0	856	0	FALSE	ACH-000225
ECC12_STOMACH	MT-TL1--MT-RNR2	4	33	MT-TL1	1086	chrM:3315:+	MT-RNR2	5568	chrM:3163:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.0313	0.2584	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ECC12_STOMACH	0.97	1	0.2897	FALSE	7	521	16	32	0	FALSE	ACH-000225
ECC12_STOMACH	AC123023.1--AC018359.1	12	0	AC123023.1	1065	chr3:34244800:+	AC018359.1	8782	chr3:34387714:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.094	0	NEIGHBORS_OVERLAP:+:+:[65567],AC123023.1->chr3:34244736-34310303:+,AC018359.1->chr3:34200826-34604369:+	ECC12_STOMACH	1	1	0.094	FALSE	0	1	0	3	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	10	8	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8049	67	0	0.21	0.0783	0.0626	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	0.21	0.1409	FALSE	231	217	16	283	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	11	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7865	36	0	0.25	0.0861	0.0078	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	0.25	0.0939	FALSE	231	205	14	283	0	FALSE	ACH-000225
ECC12_STOMACH	NRIP1--AF127936.7	10	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0783	0.0078	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ECC12_STOMACH	0.92	1	0.0861	FALSE	292	1546	117	613	0	FALSE	ACH-000225
ECC12_STOMACH	RP11-444D3.1--SOX5	8	9	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	6	1	0.74	0.0626	0.0705	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	ECC12_STOMACH	0.74	1	0.1331	TRUE	274	363	69	150	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	8	7	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	9114	0	0	1	0.0626	0.0548	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	1	0.1174	FALSE	231	217	16	283	0	FALSE	ACH-000225
ECC12_STOMACH	CADPS--PTPRG-AS1	7	10	CADPS	1791	chr3:62860264:-	PTPRG-AS1	63177	chr3:62249817:-	ONLY_REF_SPLICE	YES	67	3	0.2	0.85	0.0548	0.0783	NEIGHBORS[29017],CADPS->Ca2+_dependent_secretion_activator,chr3:62384022-62861054:-,PTPRG-AS1->PTPRG_antisense_RNA_1,chr3:62246540-62355005:-	ECC12_STOMACH	0.2	0.85	0.1331	FALSE	0	0	0	1	0	FALSE	ACH-000225
ECC12_STOMACH	RP11-108K3.1--GLDN	8	6	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	4	0.93	0.78	0.0626	0.047	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	ECC12_STOMACH	0.78	0.93	0.1096	FALSE	0	19	0	46	0	FALSE	ACH-000225
ECC12_STOMACH	RP11-123O10.4--GRIP1	8	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	5	1	0.74	0.0626	0.047	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ECC12_STOMACH	0.74	1	0.1096	FALSE	93	270	15	244	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	9	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	6812	36	0	0.22	0.0705	0.0078	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	0.22	0.0783	FALSE	230	198	14	283	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND6--MT-TE	3	25	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0235	0.1958	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC12_STOMACH	1	1	0.2193	FALSE	499	1288	110	792	0	FALSE	ACH-000225
ECC12_STOMACH	ALG12--DENND6B	5	16	ALG12	7822	chr22:50297576:-	DENND6B	22241	chr22:50751054:-	INCL_NON_REF_SPLICE	YES	97	49	0.18	0.3	0.0392	0.1253	ALG12->ALG12,_alpha-1,6-mannosyltransferase,chr22:50293877-50312106:-,DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-	ECC12_STOMACH	0.18	0.3	0.1645	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	PAPSS2--MINPP1	1	32	PAPSS2	7328	chr10:89475600:+	MINPP1	24270	chr10:89306330:+	ONLY_REF_SPLICE	YES	63	124	0.34	0.21	0.0078	0.2506	PAPSS2->3'-phosphoadenosine_5'-phosphosulfate_synthase_2,chr10:89419370-89507462:+,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	ECC12_STOMACH	0.21	0.34	0.2584	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	MT-ATP6--MT-CO1	8	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	5603	14479	0	0	0.0626	0.0235	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC12_STOMACH	0	0	0.0861	FALSE	183	104	9	328	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	7	7	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	9155	0	0	1	0.0548	0.0548	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	1	0.1096	FALSE	231	217	16	283	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	6	11	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	7659	0	0	1	0.047	0.0861	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	1	0.1331	FALSE	231	217	16	283	0	FALSE	ACH-000225
ECC12_STOMACH	CASC9--RP11-300E4.2	8	2	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	24	0	0.29	1	0.0626	0.0157	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	ECC12_STOMACH	0.29	1	0.0783	TRUE	0	23	0	19	23	TRUE	ACH-000225
ECC12_STOMACH	MT-ND1--MT-RNR2	6	10	MT-ND1	1492	chrM:3798:+	MT-RNR2	4985	chrM:1699:+	INCL_NON_REF_SPLICE	YES	35	0	0.31	1	0.047	0.0783	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ECC12_STOMACH	0.31	1	0.1253	FALSE	114	26	4	85	0	FALSE	ACH-000225
ECC12_STOMACH	RP11-123O10.4--GRIP1	4	18	RP11-123O10.4	2167	chr12:67285681:-	GRIP1	11081	chr12:66990707:-	INCL_NON_REF_SPLICE	YES	0	2	1	0.92	0.0313	0.141	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ECC12_STOMACH	0.92	1	0.1723	FALSE	0	5	0	12	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	7	5	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	8294	1337	0	0.01	0.0548	0.0392	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	0.01	0.094	FALSE	231	217	16	283	0	FALSE	ACH-000225
ECC12_STOMACH	RP11-120D5.1--MID1	7	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	12	0.86	0.5	0.0548	0.0392	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	ECC12_STOMACH	0.5	0.86	0.094	FALSE	16	356	14	466	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	6	8	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7848	67	0	0.17	0.047	0.0626	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	0.17	0.1096	FALSE	231	217	16	283	0	FALSE	ACH-000225
ECC12_STOMACH	ZNF654--HMGB2	8	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0626	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	ECC12_STOMACH	1	1	0.0626	TRUE	0	0	0	518	0	FALSE	ACH-000225
ECC12_STOMACH	C15orf57--CBX3	6	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	38	34	0.24	0.26	0.047	0.047	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	ECC12_STOMACH	0.24	0.26	0.094	TRUE	267	562	48	632	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ATP6--MT-CO1	7	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	5611	14231	0	0	0.0548	0.0157	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC12_STOMACH	0	0	0.0705	FALSE	183	104	9	328	0	FALSE	ACH-000225
ECC12_STOMACH	MT-CO3--MT-ATP6	6	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	5	1	0.71	0.92	0.047	0.047	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ECC12_STOMACH	0.71	0.92	0.094	FALSE	189	492	56	216	0	FALSE	ACH-000225
ECC12_STOMACH	GUSBP2--RP11-457M11.5	6	5	GUSBP2	10937	chr6:26839903:-	RP11-457M11.5	15456	chr6:26687347:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.69	0.047	0.0392	GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2,RP11-457M11.5->chr6:26686469-26688192:+	ECC12_STOMACH	0.69	1	0.0862	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	3	17	MT-ND4	2255	chrM:12014:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	1356	0	0.01	1	0.0235	0.1331	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0.01	1	0.1566	FALSE	216	209	16	281	0	FALSE	ACH-000225
ECC12_STOMACH	UBE2D2--HAPLN1	6	5	UBE2D2	6963	chr5:139003046:+	HAPLN1	17670	chr5:82969368:-	ONLY_REF_SPLICE	YES	199	1	0.05	0.92	0.047	0.0392	UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2,HAPLN1->Oncogene{Bushman},chr5:82933624-83017432:-,hyaluronan_and_proteoglycan_link_protein_1	ECC12_STOMACH	0.05	0.92	0.0862	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	MT-ND1--MT-RNR2	6	4	MT-ND1	1207	chrM:3513:+	MT-RNR2	5683	chrM:2397:+	INCL_NON_REF_SPLICE	YES	9	6996	0.53	0	0.047	0.0313	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ECC12_STOMACH	0	0.53	0.0783	FALSE	120	26	5	87	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	4	12	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	7957	0	0	1	0.0313	0.094	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	1	0.1253	FALSE	231	217	16	283	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	4	11	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3078	67	0	0.18	0.0313	0.0861	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	0.18	0.1174	FALSE	218	210	16	281	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	5	7	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	9608	0	0	1	0.0392	0.0548	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	1	0.094	FALSE	231	217	16	283	0	FALSE	ACH-000225
ECC12_STOMACH	MT-CO3--MT-ATP6	3	14	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	5	1	0.77	0.94	0.0235	0.1096	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ECC12_STOMACH	0.77	0.94	0.1331	FALSE	189	492	56	216	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	5	6	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	10660	652	0	0.02	0.0392	0.047	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	0.02	0.0862	FALSE	231	217	16	283	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND6--MT-TE	4	10	MT-ND6	1036	chrM:14638:-	MT-TE	4503	chrM:14765:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0.0783	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC12_STOMACH	1	1	0.1096	FALSE	499	1288	110	792	0	FALSE	ACH-000225
ECC12_STOMACH	CADPS--PTPRG-AS1	1	21	CADPS	1791	chr3:62860264:-	PTPRG-AS1	57912	chr3:62299645:-	ONLY_REF_SPLICE	YES	67	11	0.25	0.67	0.0078	0.1645	NEIGHBORS[29017],CADPS->Ca2+_dependent_secretion_activator,chr3:62384022-62861054:-,PTPRG-AS1->PTPRG_antisense_RNA_1,chr3:62246540-62355005:-	ECC12_STOMACH	0.25	0.67	0.1723	FALSE	0	0	0	1	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ATP6--MT-CO1	6	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	5586	13900	0	0	0.047	0.0078	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC12_STOMACH	0	0	0.0548	FALSE	183	104	9	328	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	5	5	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	9812	1337	0	0.01	0.0392	0.0392	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	0.01	0.0784	FALSE	231	205	14	283	0	FALSE	ACH-000225
ECC12_STOMACH	MT-TA--MT-TC	4	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0.0705	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ECC12_STOMACH	1	1	0.1018	FALSE	462	80	0	856	0	FALSE	ACH-000225
ECC12_STOMACH	TPH2--TRHDE	4	9	TPH2	29171	chr12:72580403:+	TRHDE	37350	chr12:72680461:+	INCL_NON_REF_SPLICE	YES	0	97	1	0.12	0.0313	0.0705	NEIGHBORS_OVERLAP:+:+:[99352],TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	ECC12_STOMACH	0.12	1	0.1018	FALSE	0	0	0	2	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	3	12	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	8626	0	0	1	0.0235	0.094	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	1	0.1175	FALSE	231	217	16	283	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	4	8	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	8042	36	0	0.25	0.0313	0.0626	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	0.25	0.0939	FALSE	231	217	16	283	0	FALSE	ACH-000225
ECC12_STOMACH	CMTM8--CMTM7	5	3	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	101	18	0.07	0.31	0.0392	0.0235	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	ECC12_STOMACH	0.07	0.31	0.0627	FALSE	118	557	29	88	0	FALSE	ACH-000225
ECC12_STOMACH	DUSP10--BAGE2	2	15	DUSP10	1196	chr1:221915323:-	BAGE2	14854	chr21:11061030:-	ONLY_REF_SPLICE	YES	7	2	0.71	0.89	0.0157	0.1175	DUSP10->Oncogene{Bushman},chr1:221874766-221915518:-,dual_specificity_phosphatase_10,BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-	ECC12_STOMACH	0.71	0.89	0.1332	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	4	7	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	9147	0	0	1	0.0313	0.0548	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	1	0.0861	FALSE	231	217	16	283	0	FALSE	ACH-000225
ECC12_STOMACH	NRIP1--AF127936.7	5	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.35	1	0.0392	0.0235	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ECC12_STOMACH	0.35	1	0.0627	FALSE	125	705	46	456	0	FALSE	ACH-000225
ECC12_STOMACH	CASC9--RP11-300E4.2	5	1	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	16	0	0.27	1	0.0392	0.0078	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	ECC12_STOMACH	0.27	1	0.047	TRUE	0	12	0	10	12	TRUE	ACH-000225
ECC12_STOMACH	HIPK2--MT-RNR2	5	1	HIPK2	3392	chr7:139416616:-	MT-RNR2	33512	chrM:1683:+	INCL_NON_REF_SPLICE	YES	81	0	0.07	1	0.0392	0.0078	HIPK2->Oncogene{Bushman},chr7:139246316-139477577:-,homeodomain_interacting_protein_kinase_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ECC12_STOMACH	0.07	1	0.047	FALSE	0	0	0	2	0	FALSE	ACH-000225
ECC12_STOMACH	LINC01036--LINC01037	5	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0.0078	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	ECC12_STOMACH	1	1	0.047	FALSE	0	24	0	62	0	FALSE	ACH-000225
ECC12_STOMACH	MT-CO3--MT-ATP6	3	9	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	1	1	0.92	0.92	0.0235	0.0705	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ECC12_STOMACH	0.92	0.92	0.094	FALSE	189	492	56	216	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND1--MT-RNR2	3	9	MT-ND1	1204	chrM:3510:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	NO	10	0	0.55	1	0.0235	0.0705	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ECC12_STOMACH	0.55	1	0.094	FALSE	114	26	4	85	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	4	5	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	10277	10	0	0.47	0.0313	0.0392	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	0.47	0.0705	FALSE	231	216	16	283	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ATP6--MT-CO1	4	4	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	6117	0	0	1	0.0313	0.0313	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC12_STOMACH	0	1	0.0626	FALSE	182	97	9	327	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND1--MT-RNR2	4	4	MT-ND1	1297	chrM:3603:+	MT-RNR2	5502	chrM:2216:+	INCL_NON_REF_SPLICE	YES	9	5105	0.47	0	0.0313	0.0313	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ECC12_STOMACH	0	0.47	0.0626	FALSE	120	26	5	87	0	FALSE	ACH-000225
ECC12_STOMACH	RP11-444D3.1--SOX5	1	16	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	8	1	0.68	0.0078	0.1253	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	ECC12_STOMACH	0.68	1	0.1331	TRUE	160	277	29	98	0	FALSE	ACH-000225
ECC12_STOMACH	TPH2--TRHDE	4	4	TPH2	21594	chr12:72499532:+	TRHDE	37350	chr12:72680461:+	ONLY_REF_SPLICE	YES	1	97	0.89	0.08	0.0313	0.0313	NEIGHBORS_OVERLAP:+:+:[99352],TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	ECC12_STOMACH	0.08	0.89	0.0626	FALSE	0	2	0	2	0	FALSE	ACH-000225
ECC12_STOMACH	NRIP1--AF127936.7	4	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.29	1	0.0313	0.0235	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ECC12_STOMACH	0.29	1	0.0548	FALSE	164	806	69	479	0	FALSE	ACH-000225
ECC12_STOMACH	RP11-108K3.1--GLDN	4	3	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	4	1	0.64	0.0313	0.0235	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	ECC12_STOMACH	0.64	1	0.0548	FALSE	0	30	1	55	0	FALSE	ACH-000225
ECC12_STOMACH	RP11-1L12.3--SLC5A12	4	3	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0313	0.0235	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	ECC12_STOMACH	0.7	1	0.0548	TRUE	3	101	0	60	0	FALSE	ACH-000225
ECC12_STOMACH	AGBL4--AGBL4-IT1	4	2	AGBL4	3399	chr1:50162985:-	AGBL4-IT1	30507	chr1:49840016:-	ONLY_REF_SPLICE	YES	4	0	0.6	1	0.0313	0.0157	NEIGHBORS_OVERLAP:-:-:[97884],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,AGBL4-IT1->AGBL4_intronic_transcript_1,chr1:49839873-49937757:-	ECC12_STOMACH	0.6	1	0.047	FALSE	75	131	5	14	0	FALSE	ACH-000225
ECC12_STOMACH	CUL3--SERPINE2	4	2	CUL3	8875	chr2:225400245:-	SERPINE2	42155	chr2:224866639:-	ONLY_REF_SPLICE	YES	82	3	0.07	0.67	0.0313	0.0157	CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3,SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2	ECC12_STOMACH	0.07	0.67	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	MT-ATP6--MT-CO1	4	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	5611	12060	0	0	0.0313	0.0157	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC12_STOMACH	0	0	0.047	FALSE	183	104	9	328	0	FALSE	ACH-000225
ECC12_STOMACH	MT-CO3--MT-ATP6	3	6	MT-CO3	1716	chrM:9922:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.9	0.0235	0.047	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ECC12_STOMACH	0.9	1	0.0705	FALSE	189	492	56	216	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND1--MT-RNR2	4	2	MT-ND1	1009	chrM:3315:+	MT-RNR2	6449	chrM:3163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0.0157	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ECC12_STOMACH	1	1	0.047	FALSE	92	22	4	61	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ATP6--MT-CO1	3	5	MT-ATP6	1249	chrM:8775:+	MT-CO1	4998	chrM:6220:+	INCL_NON_REF_SPLICE	YES	9160	13090	0	0	0.0235	0.0392	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC12_STOMACH	0	0	0.0627	FALSE	183	104	9	328	0	FALSE	ACH-000225
ECC12_STOMACH	MT-CO3--MT-ATP6	4	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	7	1	0.42	0.83	0.0313	0.0078	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ECC12_STOMACH	0.42	0.83	0.0391	FALSE	189	492	56	216	0	FALSE	ACH-000225
ECC12_STOMACH	RP11-141M1.3--STARD13	4	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0313	0.0078	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	ECC12_STOMACH	0.83	1	0.0391	FALSE	141	264	50	91	0	FALSE	ACH-000225
ECC12_STOMACH	DUSP10--BAGE2	3	4	DUSP10	1196	chr1:221915323:-	BAGE2	17045	chr21:11058235:-	INCL_NON_REF_SPLICE	YES	7	4	0.5	0.64	0.0235	0.0313	DUSP10->Oncogene{Bushman},chr1:221874766-221915518:-,dual_specificity_phosphatase_10,BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-	ECC12_STOMACH	0.5	0.64	0.0548	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	MT-ATP6--MT-CO1	3	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	6975	0	0	1	0.0235	0.0313	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC12_STOMACH	0	1	0.0548	FALSE	182	97	9	327	0	FALSE	ACH-000225
ECC12_STOMACH	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ECC12_STOMACH	1	1	0.0313	FALSE	189	492	56	216	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC12_STOMACH	1	1	0.0313	FALSE	499	1288	110	792	0	FALSE	ACH-000225
ECC12_STOMACH	FTL--MT-CO1	3	3	FTL	1129	chr19:49468686:+	MT-CO1	6014	chrM:6339:+	INCL_NON_REF_SPLICE	YES	2551	12461	0	0	0.0235	0.0235	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC12_STOMACH	0	0	0.047	FALSE	0	7	0	14	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ATP6--MT-CO1	3	3	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	6893	12677	0	0	0.0235	0.0235	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC12_STOMACH	0	0	0.047	FALSE	183	104	9	328	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND4--MT-ATP8	3	3	MT-ND4	1303	chrM:11062:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	NO	9244	6	0	0.5	0.0235	0.0235	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC12_STOMACH	0	0.5	0.047	FALSE	231	205	14	283	0	FALSE	ACH-000225
ECC12_STOMACH	CTD-2152M20.2--GOLPH3	3	2	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	4	45	0.56	0.1	0.0235	0.0157	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	ECC12_STOMACH	0.1	0.56	0.0392	TRUE	10	26	2	24	0	FALSE	ACH-000225
ECC12_STOMACH	FTL--MT-CO1	3	2	FTL	1134	chr19:49468691:+	MT-CO1	6232	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2965	14776	0	0	0.0235	0.0157	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC12_STOMACH	0	0	0.0392	FALSE	0	7	0	14	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ATP6--MT-CO1	3	2	MT-ATP6	1555	chrM:9081:+	MT-CO1	5956	chrM:7178:+	INCL_NON_REF_SPLICE	YES	2387	9856	0	0	0.0235	0.0157	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC12_STOMACH	0	0	0.0392	FALSE	183	104	9	328	0	FALSE	ACH-000225
ECC12_STOMACH	NBPF15--WASF3	3	2	NBPF15	1832	chr1:148556810:+	WASF3	31659	chr13:27241654:+	ONLY_REF_SPLICE	YES	50	1	0.09	0.83	0.0235	0.0157	NBPF15->chr1:148555979-148596267:+,neuroblastoma_breakpoint_family_member_15,WASF3->WAS_protein_family_member_3,chr13:27131840-27263085:+	ECC12_STOMACH	0.09	0.83	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	TSNAX--LINC01031	3	2	TSNAX	9507	chr1:231697001:+	LINC01031	16660	chr1:193273967:+	INCL_NON_REF_SPLICE	YES	152	0	0.03	1	0.0235	0.0157	TSNAX->chr1:231664399-231702270:+,translin-associated_factor_X,LINC01031->chr1:193273875-193335083:+,long_intergenic_non-protein_coding_RNA_1031	ECC12_STOMACH	0.03	1	0.0392	TRUE	0	0	0	1	0	FALSE	ACH-000225
ECC12_STOMACH	CTD-2152M20.2--GOLPH3	3	1	CTD-2152M20.2	1447	chr5:32121601:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	1	45	0.8	0.08	0.0235	0.0078	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	ECC12_STOMACH	0.08	0.8	0.0313	TRUE	6	16	0	6	0	FALSE	ACH-000225
ECC12_STOMACH	KCNB2--TERF1	3	1	KCNB2	3167	chr8:73480548:+	TERF1	14614	chr8:73926130:+	ONLY_REF_SPLICE	YES	51	139	0.07	0.03	0.0235	0.0078	NEIGHBORS[70515],KCNB2->chr8:73449626-73850584:+,potassium_voltage-gated_channel_subfamily_B_member_2,TERF1->chr8:73921099-73960357:+,telomeric_repeat_binding_factor_1	ECC12_STOMACH	0.03	0.07	0.0313	FALSE	0	0	0	1	0	FALSE	ACH-000225
ECC12_STOMACH	LINC01036--LINC01037	3	1	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0.0078	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	ECC12_STOMACH	1	1	0.0313	FALSE	0	26	0	50	0	FALSE	ACH-000225
ECC12_STOMACH	MT-CO3--MT-ATP6	3	1	MT-CO3	1006	chrM:9212:+	MT-ATP6	5062	chrM:8804:+	INCL_NON_REF_SPLICE	YES	0	24	1	0.14	0.0235	0.0078	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ECC12_STOMACH	0.14	1	0.0313	FALSE	189	492	56	216	0	FALSE	ACH-000225
ECC12_STOMACH	RP11-120D5.1--MID1	2	5	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	12	0.58	0.37	0.0157	0.0392	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	ECC12_STOMACH	0.37	0.58	0.0549	FALSE	0	48	1	163	0	FALSE	ACH-000225
ECC12_STOMACH	RPL9--AFAP1	1	9	RPL9	3543	chr4:39458026:-	AFAP1	11459	chr4:7870446:-	ONLY_REF_SPLICE	NO	673	23	0.01	0.3	0.0078	0.0705	RPL9->chr4:39455744-39460568:-,ribosomal_protein_L9,AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-	ECC12_STOMACH	0.01	0.3	0.0783	FALSE	0	0	0	1	0	FALSE	ACH-000225
ECC12_STOMACH	UBE2D2--HAPLN1	2	5	UBE2D2	6963	chr5:139003046:+	HAPLN1	15882	chr5:82971156:-	ONLY_REF_SPLICE	YES	199	1	0.03	0.88	0.0157	0.0392	UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2,HAPLN1->Oncogene{Bushman},chr5:82933624-83017432:-,hyaluronan_and_proteoglycan_link_protein_1	ECC12_STOMACH	0.03	0.88	0.0549	TRUE	0	0	0	1	0	FALSE	ACH-000225
ECC12_STOMACH	MT-CO3--MT-ATP6	3	0	MT-CO3	1158	chrM:9364:+	MT-ATP6	5461	chrM:9203:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0235	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ECC12_STOMACH	1	1	0.0235	FALSE	189	492	56	216	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0235	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC12_STOMACH	1	1	0.0235	FALSE	499	1288	110	792	0	FALSE	ACH-000225
ECC12_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0235	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC12_STOMACH	1	1	0.0235	FALSE	499	1288	110	792	0	FALSE	ACH-000225
ECC12_STOMACH	MT-TL1--MT-RNR2	3	0	MT-TL1	1040	chrM:3269:+	MT-RNR2	5616	chrM:3211:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0235	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ECC12_STOMACH	1	1	0.0235	FALSE	7	521	16	32	0	FALSE	ACH-000225
ECC12_STOMACH	NRG1-IT1--NRG1-IT2	2	4	NRG1-IT1	2253	chr8:31887001:+	NRG1-IT2	15465	chr8:32144617:+	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0157	0.0313	NEIGHBORS[31907],NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+,NRG1-IT2->chr8:32028898-32145082:+	ECC12_STOMACH	0.55	1	0.047	FALSE	3	1	0	5	0	FALSE	ACH-000225
ECC12_STOMACH	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ECC12_STOMACH	1	1	0.0235	TRUE	465	1949	224	605	0	FALSE	ACH-000225
ECC12_STOMACH	CMTM8--CMTM7	2	3	CMTM8	2615	chr3:32399038:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	106	18	0.05	0.22	0.0157	0.0235	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	ECC12_STOMACH	0.05	0.22	0.0392	FALSE	4	30	0	3	0	FALSE	ACH-000225
ECC12_STOMACH	AGBL4--BEND5	2	2	AGBL4	8128	chr1:49332863:-	BEND5	30006	chr1:49224956:-	ONLY_REF_SPLICE	YES	4	5	0.5	0.44	0.0157	0.0157	NEIGHBORS_OVERLAP:-:-:[49446],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	ECC12_STOMACH	0.44	0.5	0.0314	FALSE	0	2	2	2	0	FALSE	ACH-000225
ECC12_STOMACH	AGBL4--BEND5	2	2	AGBL4	7088	chr1:49511256:-	BEND5	30006	chr1:49224956:-	ONLY_REF_SPLICE	YES	0	5	1	0.44	0.0157	0.0157	NEIGHBORS_OVERLAP:-:-:[49446],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	ECC12_STOMACH	0.44	1	0.0314	FALSE	0	4	0	2	0	FALSE	ACH-000225
ECC12_STOMACH	AGBL4--BEND5	2	2	AGBL4	7088	chr1:49511256:-	BEND5	28501	chr1:49227142:-	ONLY_REF_SPLICE	YES	0	4	1	0.5	0.0157	0.0157	NEIGHBORS_OVERLAP:-:-:[49446],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	ECC12_STOMACH	0.5	1	0.0314	FALSE	0	10	2	2	0	FALSE	ACH-000225
ECC12_STOMACH	RPL9--AFAP1	2	2	RPL9	2363	chr4:39459206:-	AFAP1	11459	chr4:7870446:-	ONLY_REF_SPLICE	YES	825	23	0	0.15	0.0157	0.0157	RPL9->chr4:39455744-39460568:-,ribosomal_protein_L9,AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-	ECC12_STOMACH	0	0.15	0.0314	FALSE	0	0	0	1	0	FALSE	ACH-000225
ECC12_STOMACH	LINC00299--AC007464.1	2	1	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0.0078	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	ECC12_STOMACH	1	1	0.0235	TRUE	67	49	0	25	0	FALSE	ACH-000225
ECC12_STOMACH	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	17	6	0.15	0.33	0.0157	0.0078	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ECC12_STOMACH	0.15	0.33	0.0235	FALSE	8	57	1	47	0	FALSE	ACH-000225
ECC12_STOMACH	RP11-141M1.3--STARD13	2	1	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0.0078	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	ECC12_STOMACH	1	1	0.0235	FALSE	49	120	16	70	0	FALSE	ACH-000225
ECC12_STOMACH	RP11-444D3.1--SOX5	1	5	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	7	6	0.46	0.5	0.0078	0.0392	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	ECC12_STOMACH	0.46	0.5	0.047	TRUE	16	11	2	20	0	FALSE	ACH-000225
ECC12_STOMACH	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0.0078	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ECC12_STOMACH	1	1	0.0235	FALSE	515	4851	409	746	0	FALSE	ACH-000225
ECC12_STOMACH	TARBP1--CD5L	2	1	TARBP1	15166	chr1:234573021:-	CD5L	41404	chr1:157809200:-	ONLY_REF_SPLICE	YES	34	0	0.08	1	0.0157	0.0078	TARBP1->TAR_(HIV-1)_RNA_binding_protein_1,chr1:234527059-234614849:-,CD5L->CD5_molecule_like,chr1:157800704-157868046:-	ECC12_STOMACH	0.08	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	TPH2--TRHDE	2	1	TPH2	18133	chr12:72441437:+	TRHDE	37350	chr12:72680461:+	ONLY_REF_SPLICE	YES	0	97	1	0.03	0.0157	0.0078	NEIGHBORS_OVERLAP:+:+:[99352],TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	ECC12_STOMACH	0.03	1	0.0235	FALSE	0	1	0	4	0	FALSE	ACH-000225
ECC12_STOMACH	DMWD--CDK18	2	0	DMWD	2670	chr19:46294163:-	CDK18	21922	chr1:205496922:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	DMWD->chr19:46286205-46296060:-,dystrophia_myotonica,_WD_repeat_containing,CDK18->Oncogene{Bushman},chr1:205473723-205501921:+,cyclin-dependent_kinase_18	ECC12_STOMACH	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	EPC2--KIF5C	2	0	EPC2	3271	chr2:149447942:+	KIF5C	30568	chr2:149803413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	NEIGHBORS[87689],EPC2->chr2:149402009-149545130:+,enhancer_of_polycomb_homolog_2,KIF5C->chr2:149632819-149883273:+,kinesin_family_member_5C	ECC12_STOMACH	1	1	0.0157	FALSE	0	0	0	1	0	FALSE	ACH-000225
ECC12_STOMACH	RNF128--CXorf57	2	0	RNF128	3349	chrX:105970627:+	CXorf57	26115	chrX:105905245:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	LOCAL_REARRANGEMENT:+:[14352],RNF128->chrX:105937024-106040223:+,ring_finger_protein_128,_E3_ubiquitin_protein_ligase,CXorf57->chrX:105855160-105922672:+,chromosome_X_open_reading_frame_57	ECC12_STOMACH	1	1	0.0157	TRUE	0	1	0	1	1	TRUE	ACH-000225
ECC12_STOMACH	SF3B3--COG4	2	0	SF3B3	1141	chr16:70557831:+	COG4	37503	chr16:70553634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	LOCAL_INVERSION:+:-:[223],SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3,COG4->chr16:70514471-70557468:-,component_of_oligomeric_golgi_complex_4	ECC12_STOMACH	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	TARBP1--CD5L	2	0	TARBP1	14068	chr1:234582549:-	CD5L	41404	chr1:157809200:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	TARBP1->TAR_(HIV-1)_RNA_binding_protein_1,chr1:234527059-234614849:-,CD5L->CD5_molecule_like,chr1:157800704-157868046:-	ECC12_STOMACH	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	TSC1--CAMSAP1	2	0	TSC1	2154	chr9:135810420:-	CAMSAP1	39761	chr9:138719430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	TSC1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:135766735-135820020:-,tuberous_sclerosis_1,CAMSAP1->calmodulin_regulated_spectrin_associated_protein_1,chr9:138700333-138799074:-	ECC12_STOMACH	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	TTBK2--TP53BP1	2	0	TTBK2	8673	chr15:43132558:-	TP53BP1	49653	chr15:43733781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	TTBK2->chr15:43030932-43213007:-,tau_tubulin_kinase_2,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	ECC12_STOMACH	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	AGBL4--BEND5	1	3	AGBL4	8128	chr1:49332863:-	BEND5	28501	chr1:49227142:-	ONLY_REF_SPLICE	YES	4	4	0.5	0.5	0.0078	0.0235	NEIGHBORS_OVERLAP:-:-:[49446],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	ECC12_STOMACH	0.5	0.5	0.0313	FALSE	0	10	1	4	0	FALSE	ACH-000225
ECC12_STOMACH	CUL3--SERPINE2	1	2	CUL3	12238	chr2:225378241:-	SERPINE2	42155	chr2:224866639:-	ONLY_REF_SPLICE	YES	61	3	0.05	0.5	0.0078	0.0157	CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3,SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2	ECC12_STOMACH	0.05	0.5	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	NBPF15--WASF3	1	2	NBPF15	1294	chr1:148556272:+	WASF3	31659	chr13:27241654:+	ONLY_REF_SPLICE	NO	46	1	0.06	0.75	0.0078	0.0157	NBPF15->chr1:148555979-148596267:+,neuroblastoma_breakpoint_family_member_15,WASF3->WAS_protein_family_member_3,chr13:27131840-27263085:+	ECC12_STOMACH	0.06	0.75	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	CAMK2D--ARSJ	1	1	CAMK2D	3019	chr4:114680476:-	ARSJ	36877	chr4:114867571:-	ONLY_REF_SPLICE	YES	213	82	0.01	0.02	0.0078	0.0078	CAMK2D->Oncogene{Bushman},calcium/calmodulin_dependent_protein_kinase_II_delta,chr4:114372188-114683083:-,ARSJ->arylsulfatase_family_member_J,chr4:114821440-114900883:-	ECC12_STOMACH	0.01	0.02	0.0156	FALSE	0	0	0	1	0	FALSE	ACH-000225
ECC12_STOMACH	HECW1--HNRNPC	1	1	HECW1	8275	chr7:43351686:+	HNRNPC	59213	chr14:21702388:-	ONLY_REF_SPLICE	NO	0	1721	1	0	0.0078	0.0078	HECW1->HECT,_C2_and_WW_domain_containing_E3_ubiquitin_protein_ligase_1,chr7:43152198-43605600:+,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	ECC12_STOMACH	0	1	0.0156	FALSE	0	0	0	1	0	FALSE	ACH-000225
ECC12_STOMACH	KIF26B--SMYD3	1	1	KIF26B	2699	chr1:245319985:+	SMYD3	55692	chr1:246093239:-	ONLY_REF_SPLICE	YES	3	63	0.4	0.03	0.0078	0.0078	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	ECC12_STOMACH	0.03	0.4	0.0156	TRUE	0	18	0	6	12	TRUE	ACH-000225
ECC12_STOMACH	LINC00299--AC007464.1	1	1	LINC00299	17125	chr2:8200478:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0078	0.0078	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	ECC12_STOMACH	1	1	0.0156	TRUE	20	19	0	15	0	FALSE	ACH-000225
ECC12_STOMACH	PICALM--SYTL2	1	1	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	171	192	0.01	0.01	0.0078	0.0078	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	ECC12_STOMACH	0.01	0.01	0.0156	FALSE	4	2	0	20	0	FALSE	ACH-000225
ECC12_STOMACH	POU6F2--OASL	1	1	POU6F2	12707	chr7:39247219:+	OASL	33336	chr12:121471546:-	ONLY_REF_SPLICE	NO	5	1	0.29	0.67	0.0078	0.0078	POU6F2->Oncogene{Bushman},POU_class_6_homeobox_2,chr7:39017598-39532694:+,OASL->2'-5'-oligoadenylate_synthetase_like,chr12:121458095-121477045:-	ECC12_STOMACH	0.29	0.67	0.0156	TRUE	0	0	0	1	0	TRUE	ACH-000225
ECC12_STOMACH	RP11-108K3.1--GLDN	1	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	3	1	0.4	0.0078	0.0078	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	ECC12_STOMACH	0.4	1	0.0156	FALSE	1	20	0	46	0	FALSE	ACH-000225
ECC12_STOMACH	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	21326	chr12:23908658:-	ONLY_REF_SPLICE	YES	0	27	1	0.07	0.0078	0.0078	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	ECC12_STOMACH	0.07	1	0.0156	TRUE	0	1	0	5	0	FALSE	ACH-000225
ECC12_STOMACH	TPH2--TRHDE	1	1	TPH2	18133	chr12:72441437:+	TRHDE	41846	chr12:72771775:+	ONLY_REF_SPLICE	YES	0	70	1	0.03	0.0078	0.0078	NEIGHBORS_OVERLAP:+:+:[99352],TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	ECC12_STOMACH	0.03	1	0.0156	FALSE	0	0	0	1	0	FALSE	ACH-000225
ECC12_STOMACH	ZBTB4--DAZAP1	1	1	ZBTB4	2330	chr17:7382775:-	DAZAP1	16680	chr19:1416456:+	ONLY_REF_SPLICE	YES	8	149	0.2	0.01	0.0078	0.0078	ZBTB4->chr17:7362685-7387582:-,zinc_finger_and_BTB_domain_containing_4,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	ECC12_STOMACH	0.01	0.2	0.0156	FALSE	0	0	0	1	0	FALSE	ACH-000225
ACHN_KIDNEY	TIMM23B--LINC00843	107	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.3458	0.3899	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ACHN_KIDNEY	0.99	1	1.7357	TRUE	508	994	45	981	0	FALSE	ACH-000046
ACHN_KIDNEY	TIMM23--RP11-464F9.1	73	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	321	4	0.19	0.95	0.9182	0.0377	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ACHN_KIDNEY	0.19	0.95	0.9559	TRUE	519	3926	326	965	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-TA--MT-TC	65	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8176	0.088	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ACHN_KIDNEY	1	1	0.9056	FALSE	462	80	0	856	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND6--MT-ND5	43	1	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1681	1	0.03	0.5408	0.0126	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	ACHN_KIDNEY	0.03	1	0.5534	FALSE	101	855	57	72	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND6--MT-TE	25	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3144	0.0126	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ACHN_KIDNEY	1	1	0.327	FALSE	499	1288	110	792	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND4--MT-ATP8	17	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	10844	1	0	0.95	0.2138	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ACHN_KIDNEY	0	0.95	0.2264	FALSE	230	193	14	283	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND6--MT-TE	14	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.1761	0.088	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ACHN_KIDNEY	0.91	1	0.2641	FALSE	499	1288	110	792	0	FALSE	ACH-000046
ACHN_KIDNEY	RP11-123O10.4--GRIP1	13	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1635	0.1132	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ACHN_KIDNEY	1	1	0.2767	FALSE	416	2512	207	587	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND6--MT-TE	14	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1761	0.0252	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ACHN_KIDNEY	1	1	0.2013	FALSE	499	1288	110	792	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-RNR2	13	5	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	10021	8206	0	0	0.1635	0.0629	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ACHN_KIDNEY	0	0	0.2264	FALSE	63	17	1	58	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND4--MT-ATP8	11	11	MT-ND4	2283	chrM:12042:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18	48	0.55	0.31	0.1384	0.1384	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ACHN_KIDNEY	0.31	0.55	0.2768	FALSE	213	207	15	279	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-CO1	12	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8876	18936	0	0	0.1509	0.0126	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ACHN_KIDNEY	0	0	0.1635	FALSE	183	104	9	328	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-RNR2	11	4	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	9994	8207	0	0	0.1384	0.0503	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ACHN_KIDNEY	0	0	0.1887	FALSE	63	17	1	58	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-CO3--MT-ATP6	7	20	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	13	0.84	0.68	0.088	0.2516	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ACHN_KIDNEY	0.68	0.84	0.3396	FALSE	189	492	56	216	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-RNR2	10	5	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	8879	0	0	1	0.1258	0.0629	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ACHN_KIDNEY	0	1	0.1887	FALSE	63	17	1	58	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-CO3--MT-ATP6	6	21	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	4	72	0.87	0.27	0.0755	0.2641	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ACHN_KIDNEY	0.27	0.87	0.3396	FALSE	189	492	56	216	0	FALSE	ACH-000046
ACHN_KIDNEY	HSP90AB1--MT-RNR2	11	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1384	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ACHN_KIDNEY	1	1	0.1384	FALSE	13	9	0	364	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-CO3--MT-ATP6	3	32	MT-CO3	1533	chrM:9739:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.0377	0.4025	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ACHN_KIDNEY	0.88	1	0.4402	FALSE	189	492	56	216	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-CO3--MT-ATP6	6	20	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	13	0.87	0.67	0.0755	0.2516	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ACHN_KIDNEY	0.67	0.87	0.3271	FALSE	189	492	56	216	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-CO3--MT-ATP6	6	18	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	29	0.96	0.45	0.0755	0.2264	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ACHN_KIDNEY	0.45	0.96	0.3019	FALSE	189	492	56	216	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-TA--MT-TC	9	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1132	0.0755	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ACHN_KIDNEY	1	1	0.1887	FALSE	462	80	0	856	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND4--MT-ATP8	8	9	MT-ND4	2053	chrM:11812:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10758	48	0	0.26	0.1006	0.1132	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ACHN_KIDNEY	0	0.26	0.2138	FALSE	231	215	16	283	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-CO3--MT-ATP6	6	16	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	5	0.96	0.81	0.0755	0.2012	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ACHN_KIDNEY	0.81	0.96	0.2767	FALSE	189	492	56	216	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND4--MT-ATP8	9	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12685	5	0	0.67	0.1132	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ACHN_KIDNEY	0	0.67	0.1258	FALSE	231	205	14	283	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-CO3--MT-ATP6	4	17	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	10	0.95	0.68	0.0503	0.2138	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ACHN_KIDNEY	0.68	0.95	0.2641	FALSE	189	492	56	216	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND4--MT-ATP8	8	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10876	5	0	0.64	0.1006	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ACHN_KIDNEY	0	0.64	0.1132	FALSE	230	198	14	283	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-CO3--MT-ATP6	3	20	MT-CO3	1220	chrM:9426:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	7	10	0.77	0.7	0.0377	0.2516	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ACHN_KIDNEY	0.7	0.77	0.2893	FALSE	189	492	56	216	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND4--MT-ATP8	4	16	MT-ND4	2255	chrM:12014:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	1717	0	0.01	1	0.0503	0.2012	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ACHN_KIDNEY	0.01	1	0.2515	FALSE	216	209	16	281	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-RNR2	7	3	MT-ATP6	1161	chrM:8687:+	MT-RNR2	5364	chrM:2353:+	INCL_NON_REF_SPLICE	YES	11021	10002	0	0	0.088	0.0377	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ACHN_KIDNEY	0	0	0.1257	FALSE	63	17	1	58	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND5--MT-CO3	7	3	MT-ND5	2591	chrM:13927:+	MT-CO3	6171	chrM:9565:+	INCL_NON_REF_SPLICE	YES	2393	15033	0	0	0.088	0.0377	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	ACHN_KIDNEY	0	0	0.1257	FALSE	0	15	2	18	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-TA--MT-TC	6	6	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0755	0.0755	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ACHN_KIDNEY	1	1	0.151	FALSE	462	80	0	856	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-RNR2	4	12	MT-ATP6	1178	chrM:8704:+	MT-RNR2	4712	chrM:1701:+	INCL_NON_REF_SPLICE	YES	11867	0	0	1	0.0503	0.1509	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ACHN_KIDNEY	0	1	0.2012	FALSE	63	17	1	58	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND5--MT-CO3	6	4	MT-ND5	2607	chrM:13943:+	MT-CO3	6185	chrM:9579:+	INCL_NON_REF_SPLICE	YES	2184	14672	0	0	0.0755	0.0503	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	ACHN_KIDNEY	0	0	0.1258	FALSE	0	15	2	18	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND6--MT-ND5	7	0	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.088	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	ACHN_KIDNEY	1	1	0.088	FALSE	101	855	57	72	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND6--MT-TE	4	12	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0503	0.1509	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ACHN_KIDNEY	0.89	1	0.2012	FALSE	499	1288	110	792	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-RNR2	5	7	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	10490	8064	0	0	0.0629	0.088	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ACHN_KIDNEY	0	0	0.1509	FALSE	63	17	1	58	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND5--MT-CO3	3	15	MT-ND5	2813	chrM:14149:+	MT-CO3	5971	chrM:9365:+	INCL_NON_REF_SPLICE	YES	0	8657	1	0	0.0377	0.1887	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	ACHN_KIDNEY	0	1	0.2264	FALSE	0	15	2	17	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND5--MT-CO3	5	7	MT-ND5	2793	chrM:14129:+	MT-CO3	6199	chrM:9593:+	INCL_NON_REF_SPLICE	YES	0	13798	1	0	0.0629	0.088	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	ACHN_KIDNEY	0	1	0.1509	FALSE	0	15	2	17	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-RNR2	6	2	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	8264	8729	0	0	0.0755	0.0252	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ACHN_KIDNEY	0	0	0.1007	FALSE	63	17	1	58	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND4--MT-ATP8	6	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	11639	1756	0	0	0.0755	0.0252	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ACHN_KIDNEY	0	0	0.1007	FALSE	231	217	16	283	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND6--MT-TE	5	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0629	0.0755	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ACHN_KIDNEY	1	1	0.1384	FALSE	499	1288	110	792	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-CO1	6	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	8539	16719	0	0	0.0755	0.0126	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ACHN_KIDNEY	0	0	0.0881	FALSE	183	104	9	328	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-CO3--MT-ATP6	3	13	MT-CO3	1033	chrM:9239:+	MT-ATP6	4768	chrM:8510:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.1635	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ACHN_KIDNEY	1	1	0.2012	FALSE	189	492	56	216	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND4--MT-ATP8	5	5	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	13855	0	0	1	0.0629	0.0629	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ACHN_KIDNEY	0	1	0.1258	FALSE	231	217	16	283	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND4--MT-ATP8	5	5	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12518	5	0	0.67	0.0629	0.0629	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ACHN_KIDNEY	0	0.67	0.1258	FALSE	231	217	16	283	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND4--MT-ATP8	6	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12685	48	0	0.13	0.0755	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ACHN_KIDNEY	0	0.13	0.0881	FALSE	231	205	14	283	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND6--MT-ND5	6	1	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	1654	1	0	0.0755	0.0126	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	ACHN_KIDNEY	0	1	0.0881	FALSE	101	855	57	72	0	FALSE	ACH-000046
ACHN_KIDNEY	CCDC137--SOD2	6	0	CCDC137	6739	chr17:79640406:+	SOD2	26956	chr6:160100850:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0755	0	CCDC137->chr17:79633394-79640934:+,coiled-coil_domain_containing_137,SOD2->chr6:160090089-160183561:-,superoxide_dismutase_2,_mitochondrial	ACHN_KIDNEY	1	1	0.0755	TRUE	0	0	0	1	0	TRUE	ACH-000046
ACHN_KIDNEY	MT-CO3--MT-ATP6	3	12	MT-CO3	1035	chrM:9241:+	MT-ATP6	5316	chrM:9058:+	INCL_NON_REF_SPLICE	YES	0	10	1	0.6	0.0377	0.1509	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ACHN_KIDNEY	0.6	1	0.1886	FALSE	189	492	56	216	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-CO3--MT-ATP6	6	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0755	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ACHN_KIDNEY	1	1	0.0755	FALSE	189	492	56	216	0	FALSE	ACH-000046
ACHN_KIDNEY	MYH9--MT2A	5	3	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	860	2	0.01	0.8	0.0629	0.0377	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	ACHN_KIDNEY	0.01	0.8	0.1006	TRUE	0	0	0	24	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND4--MT-ATP8	4	6	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11639	48	0	0.17	0.0503	0.0755	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ACHN_KIDNEY	0	0.17	0.1258	FALSE	231	217	16	283	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-CO1	5	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	8760	16515	0	0	0.0629	0.0126	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ACHN_KIDNEY	0	0	0.0755	FALSE	183	104	9	328	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND4--MT-ATP8	5	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10685	5	0	0.55	0.0629	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ACHN_KIDNEY	0	0.55	0.0755	FALSE	230	193	14	283	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND4--MT-ATP8	5	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10959	48	0	0.11	0.0629	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ACHN_KIDNEY	0	0.11	0.0755	FALSE	230	198	14	283	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-TA--MT-TC	3	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.1006	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ACHN_KIDNEY	1	1	0.1383	FALSE	462	80	0	856	0	FALSE	ACH-000046
ACHN_KIDNEY	RP11-96H19.1--RP11-446N19.1	5	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0629	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ACHN_KIDNEY	1	1	0.0629	FALSE	515	4851	409	746	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-CO1	4	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	10984	0	0	1	0.0503	0.0377	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ACHN_KIDNEY	0	1	0.088	FALSE	182	97	9	327	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-RNR2	4	2	MT-ATP6	1121	chrM:8647:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	YES	8763	8088	0	0	0.0503	0.0252	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ACHN_KIDNEY	0	0	0.0755	FALSE	63	17	1	58	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-CO1	4	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	8858	18508	0	0	0.0503	0.0126	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ACHN_KIDNEY	0	0	0.0629	FALSE	183	104	9	328	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-RNR2	3	5	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	8264	0	0	1	0.0377	0.0629	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ACHN_KIDNEY	0	1	0.1006	FALSE	63	17	1	58	0	FALSE	ACH-000046
ACHN_KIDNEY	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ACHN_KIDNEY	1	1	0.0503	FALSE	13	9	0	364	0	FALSE	ACH-000046
ACHN_KIDNEY	IGFBP7--MT-ND4L	4	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ACHN_KIDNEY	1	1	0.0503	FALSE	1	0	0	30	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-RNR2	3	4	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	9994	8206	0	0	0.0377	0.0503	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ACHN_KIDNEY	0	0	0.088	FALSE	63	17	1	58	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-CO3--MT-ATP6	3	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	4	0	0.64	1	0.0377	0.0503	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ACHN_KIDNEY	0.64	1	0.088	FALSE	189	492	56	216	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-CO3--MT-ATP6	4	0	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ACHN_KIDNEY	1	1	0.0503	FALSE	189	492	56	216	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND4--MT-ATP8	3	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	14113	0	0	1	0.0377	0.0503	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ACHN_KIDNEY	0	1	0.088	FALSE	231	217	16	283	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ACHN_KIDNEY	1	1	0.0503	FALSE	462	80	0	856	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND4--MT-ATP8	3	3	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	14573	0	0	1	0.0377	0.0377	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ACHN_KIDNEY	0	1	0.0754	FALSE	231	216	16	283	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-CO1	3	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	10303	17062	0	0	0.0377	0.0252	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ACHN_KIDNEY	0	0	0.0629	FALSE	183	104	9	328	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1125	chrM:8651:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	8827	8206	0	0	0.0377	0.0252	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ACHN_KIDNEY	0	0	0.0629	FALSE	63	17	1	58	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1110	chrM:8636:+	MT-RNR2	5247	chrM:2236:+	INCL_NON_REF_SPLICE	NO	8923	8373	0	0	0.0377	0.0252	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ACHN_KIDNEY	0	0	0.0629	FALSE	63	17	1	58	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	11850	12798	0	0	0.0377	0.0126	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ACHN_KIDNEY	0	0	0.0503	FALSE	183	104	9	328	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ACHN_KIDNEY	1	1	0.0377	FALSE	189	492	56	216	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-CO3--MT-ATP6	3	0	MT-CO3	1158	chrM:9364:+	MT-ATP6	5461	chrM:9203:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ACHN_KIDNEY	1	1	0.0377	FALSE	189	492	56	216	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND4--MT-ATP8	3	0	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ACHN_KIDNEY	1	1	0.0377	FALSE	230	193	14	283	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND4--MT-ATP8	3	0	MT-ND4	1003	chrM:10762:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ACHN_KIDNEY	1	1	0.0377	FALSE	230	189	14	283	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND6--MT-ND5	3	0	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	ACHN_KIDNEY	1	1	0.0377	FALSE	101	855	57	72	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND6--MT-ND5	3	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	ACHN_KIDNEY	1	1	0.0377	FALSE	101	855	57	72	0	FALSE	ACH-000046
ACHN_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ACHN_KIDNEY	1	1	0.0377	FALSE	499	1288	110	792	0	FALSE	ACH-000046
ACHN_KIDNEY	AC002066.1--AC073130.1	2	1	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0252	0.0126	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	ACHN_KIDNEY	0.25	1	0.0378	FALSE	0	1	1	30	0	FALSE	ACH-000046
ACHN_KIDNEY	ALG3--HAUS4	2	0	ALG3	4016	chr3:183962389:-	HAUS4	16625	chr14:23415917:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	ALG3->ALG3,_alpha-1,3-_mannosyltransferase,chr3:183960089-183967336:-,HAUS4->HAUS_augmin_like_complex_subunit_4,chr14:23415437-23426370:-	ACHN_KIDNEY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000046
ACHN_KIDNEY	CDIP1--DAZAP1	2	0	CDIP1	1127	chr16:4588703:-	DAZAP1	17061	chr19:1416456:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	CDIP1->cell_death-inducing_p53_target_1,chr16:4560676-4588829:-,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	ACHN_KIDNEY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000046
ACHN_KIDNEY	PABPC1L--NBPF10	2	0	PABPC1L	8458	chr20:43559367:+	NBPF10	51050	chr1:145325952:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	ACHN_KIDNEY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000046
ACHN_KIDNEY	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ACHN_KIDNEY	1	1	0.0252	FALSE	467	2173	244	435	0	FALSE	ACH-000046
ACHN_KIDNEY	SLC16A12--LIPA	1	2	SLC16A12	5062	chr10:91222136:-	LIPA	29664	chr10:91007406:-	ONLY_REF_SPLICE	YES	36	78	0.08	0.04	0.0126	0.0252	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	ACHN_KIDNEY	0.04	0.08	0.0378	FALSE	12	128	21	13	0	FALSE	ACH-000046
ACHN_KIDNEY	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	1602	155	0	0.01	0.0126	0.0126	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	ACHN_KIDNEY	0	0.01	0.0252	FALSE	6	50	7	115	0	FALSE	ACH-000046
HS822T_FIBROBLAST	COL1A1--FN1	581	167	COL1A1	12966	chr17:48266809:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	15544	12889	0.05	0.05	6.4541	1.8551	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0.05	0.05	8.3092	TRUE	0	0	0	17	0	FALSE	ACH-000229
HS822T_FIBROBLAST	FN1--COL1A1	580	15	FN1	36954	chr2:216243980:-	COL1A1	69586	chr17:48264124:-	INCL_NON_REF_SPLICE	YES	22453	11921	0.03	0.05	6.443	0.1666	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS822T_FIBROBLAST	0.03	0.05	6.6096	TRUE	0	0	0	13	0	FALSE	ACH-000229
HS822T_FIBROBLAST	GAPDH--MAN1C1	141	0	GAPDH	5408	chr12:6647524:+	MAN1C1	31848	chr1:26112407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5663	0	GTEx_FI:{Muscle=[count:1=pct:0.4],Heart=[count:1=pct:0.4]},GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,MAN1C1->chr1:25943959-26112698:+,mannosidase_alpha_class_1C_member_1	HS822T_FIBROBLAST	1	1	1.5663	TRUE	2	17	1	1	0	FALSE	ACH-000229
HS822T_FIBROBLAST	TIMM23B--LINC00843	111	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.2331	0.3333	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS822T_FIBROBLAST	0.99	1	1.5664	TRUE	508	994	45	981	0	FALSE	ACH-000229
HS822T_FIBROBLAST	FN1--COL1A1	80	7	FN1	19505	chr2:216271170:-	COL1A1	69586	chr17:48264124:-	INCL_NON_REF_SPLICE	YES	17521	11921	0	0.01	0.8887	0.0778	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS822T_FIBROBLAST	0	0.01	0.9665	TRUE	0	0	0	4	0	FALSE	ACH-000229
HS822T_FIBROBLAST	LTBP2--EFEMP1	75	1	LTBP2	24914	chr14:74973882:-	EFEMP1	41720	chr2:56108869:-	ONLY_REF_SPLICE	YES	1603	3628	0.05	0.02	0.8331	0.0111	PROTCLUST,LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2,EFEMP1->EGF_containing_fibulin-like_extracellular_matrix_protein_1,chr2:56093102-56151274:-	HS822T_FIBROBLAST	0.02	0.05	0.8442	TRUE	0	0	0	1	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	3	288	COL1A1	14310	chr17:48265465:-	FN1	22230	chr2:216300791:-	INCL_NON_REF_SPLICE	YES	13809	1	0.02	1	0.0333	3.1993	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0.02	1	3.2326	TRUE	0	0	0	7	0	FALSE	ACH-000229
HS822T_FIBROBLAST	TIMM23--RP11-464F9.1	56	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	135	3	0.31	0.95	0.6221	0.0444	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS822T_FIBROBLAST	0.31	0.95	0.6665	TRUE	519	3926	326	965	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	11	137	COL1A1	15650	chr17:48264125:-	FN1	58080	chr2:216243979:-	INCL_NON_REF_SPLICE	YES	11984	22506	0.01	0.01	0.1222	1.5219	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0.01	0.01	1.6441	TRUE	0	0	0	18	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	5	160	COL1A1	12718	chr17:48267057:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	16982	12889	0.01	0.01	0.0555	1.7774	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0.01	0.01	1.8329	TRUE	0	0	0	17	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	3	168	COL1A1	13235	chr17:48266540:-	FN1	29153	chr2:216290005:-	INCL_NON_REF_SPLICE	YES	15617	17022	0.01	0.01	0.0333	1.8662	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0.01	0.01	1.8995	TRUE	0	0	0	3	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	3	166	COL1A1	12067	chr17:48267708:-	FN1	22236	chr2:216300785:-	INCL_NON_REF_SPLICE	YES	16029	2	0.01	0.99	0.0333	1.844	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0.01	0.99	1.8773	TRUE	0	0	0	17	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	7	122	COL1A1	13672	chr17:48266103:-	FN1	56353	chr2:216245706:-	INCL_NON_REF_SPLICE	NO	14084	21350	0.01	0.01	0.0778	1.3553	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0.01	0.01	1.4331	FALSE	0	0	0	2	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	3	125	COL1A1	13485	chr17:48266290:-	FN1	52399	chr2:216249662:-	INCL_NON_REF_SPLICE	YES	15026	19705	0.01	0.01	0.0333	1.3886	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0.01	0.01	1.4219	TRUE	0	0	0	4	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	8	99	COL1A1	13456	chr17:48266319:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	14138	23930	0.01	0	0.0889	1.0998	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0	0.01	1.1887	TRUE	0	0	0	16	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	4	112	COL1A1	13883	chr17:48265892:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	15205	23930	0.01	0	0.0444	1.2442	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0	0.01	1.2886	TRUE	0	0	0	16	0	FALSE	ACH-000229
HS822T_FIBROBLAST	FN1--COL1A1	28	15	FN1	12511	chr2:216285416:-	COL1A1	54970	chr17:48278959:-	INCL_NON_REF_SPLICE	YES	17139	0	0	1	0.311	0.1666	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS822T_FIBROBLAST	0	1	0.4776	TRUE	0	0	0	5	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	4	101	COL1A1	13471	chr17:48266304:-	FN1	61594	chr2:216239965:-	INCL_NON_REF_SPLICE	YES	14262	24481	0.01	0	0.0444	1.122	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0	0.01	1.1664	TRUE	0	0	0	16	0	FALSE	ACH-000229
HS822T_FIBROBLAST	EEF1DP3--FRY	24	10	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	1	3	0.97	0.92	0.2666	0.1111	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS822T_FIBROBLAST	0.92	0.97	0.3777	FALSE	20	24	2	21	0	FALSE	ACH-000229
HS822T_FIBROBLAST	MT-ND6--MT-TE	25	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2777	0.0222	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS822T_FIBROBLAST	1	1	0.2999	FALSE	499	1288	110	792	0	FALSE	ACH-000229
HS822T_FIBROBLAST	RP11-680G10.1--GSE1	24	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	4	1	0.88	0.2666	0.0667	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS822T_FIBROBLAST	0.88	1	0.3333	TRUE	458	1351	185	561	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	9	64	COL1A1	12982	chr17:48266793:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	14700	23930	0	0	0.1	0.711	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0	0	0.811	TRUE	0	0	0	17	0	FALSE	ACH-000229
HS822T_FIBROBLAST	PLXDC1--TAF13	25	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2777	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS822T_FIBROBLAST	1	1	0.2777	TRUE	7	10	0	216	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	3	81	COL1A1	7685	chr17:48272090:-	FN1	22275	chr2:216300746:-	INCL_NON_REF_SPLICE	YES	12891	9	0.01	0.9	0.0333	0.8998	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0.01	0.9	0.9331	TRUE	0	0	0	13	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	3	80	COL1A1	7697	chr17:48272078:-	FN1	22289	chr2:216300732:-	INCL_NON_REF_SPLICE	YES	14802	17	0.01	0.83	0.0333	0.8887	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0.01	0.83	0.922	TRUE	0	0	0	13	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	14	30	COL1A1	13242	chr17:48266533:-	FN1	63801	chr2:216236956:-	INCL_NON_REF_SPLICE	YES	15553	22846	0	0	0.1555	0.3333	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0	0	0.4888	TRUE	0	0	0	8	0	FALSE	ACH-000229
HS822T_FIBROBLAST	RP11-680G10.1--GSE1	20	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	16	1	0.59	0.2222	0.0333	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS822T_FIBROBLAST	0.59	1	0.2555	TRUE	465	1949	224	605	0	FALSE	ACH-000229
HS822T_FIBROBLAST	MT-TA--MT-TC	20	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2222	0.0111	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS822T_FIBROBLAST	1	1	0.2333	FALSE	462	80	0	856	0	FALSE	ACH-000229
HS822T_FIBROBLAST	OR51S1--TP53I11	20	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2222	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HS822T_FIBROBLAST	1	1	0.2222	TRUE	402	216	10	229	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	3	62	COL1A1	12998	chr17:48266777:-	FN1	61593	chr2:216239966:-	INCL_NON_REF_SPLICE	YES	14489	24506	0	0	0.0333	0.6887	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0	0	0.722	TRUE	0	0	0	17	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	6	49	COL1A1	12405	chr17:48267370:-	FN1	62623	chr2:216238134:-	INCL_NON_REF_SPLICE	YES	16175	26945	0	0	0.0667	0.5443	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0	0	0.611	TRUE	0	0	0	1	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL8A1--CMSS1	15	11	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	1218	53	0.02	0.33	0.1666	0.1222	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HS822T_FIBROBLAST	0.02	0.33	0.2888	FALSE	76	19	3	26	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	3	57	COL1A1	12367	chr17:48267408:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	15884	23930	0	0	0.0333	0.6332	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0	0	0.6665	TRUE	0	0	0	13	0	FALSE	ACH-000229
HS822T_FIBROBLAST	PRR16--CTD-2334D19.1	16	4	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	177	0	0.1	1	0.1777	0.0444	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS822T_FIBROBLAST	0.1	1	0.2221	FALSE	56	216	12	147	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	4	49	COL1A1	6831	chr17:48272944:-	FN1	22524	chr2:216300497:-	INCL_NON_REF_SPLICE	YES	13841	12128	0	0	0.0444	0.5443	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0	0	0.5887	TRUE	0	0	0	13	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	3	49	COL1A1	6826	chr17:48272949:-	FN1	22519	chr2:216300502:-	INCL_NON_REF_SPLICE	YES	13743	12077	0	0	0.0333	0.5443	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0	0	0.5776	TRUE	0	0	0	13	0	FALSE	ACH-000229
HS822T_FIBROBLAST	CTD-2337A12.1--CAST	15	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1666	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS822T_FIBROBLAST	1	1	0.1666	TRUE	347	1186	183	220	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	3	47	COL1A1	6820	chr17:48272955:-	FN1	22512	chr2:216300509:-	INCL_NON_REF_SPLICE	YES	13801	11860	0	0	0.0333	0.5221	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0	0	0.5554	TRUE	0	0	0	13	0	FALSE	ACH-000229
HS822T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	13	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1444	0.0222	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS822T_FIBROBLAST	0.88	1	0.1666	FALSE	515	4851	409	746	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	7	25	COL1A1	7831	chr17:48271944:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	13606	23930	0	0	0.0778	0.2777	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0	0	0.3555	TRUE	0	0	0	14	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	4	27	COL1A1	7994	chr17:48271781:-	FN1	62623	chr2:216238134:-	INCL_NON_REF_SPLICE	YES	14647	26945	0	0	0.0444	0.2999	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0	0	0.3443	TRUE	0	0	0	8	0	FALSE	ACH-000229
HS822T_FIBROBLAST	RP4-565E6.1--HYDIN	10	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1111	0.0222	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS822T_FIBROBLAST	1	1	0.1333	TRUE	456	1387	91	133	0	FALSE	ACH-000229
HS822T_FIBROBLAST	FN1--COL1A1	4	24	FN1	42923	chr2:216236709:-	COL1A1	67398	chr17:48266312:-	INCL_NON_REF_SPLICE	YES	25164	14113	0	0	0.0444	0.2666	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS822T_FIBROBLAST	0	0	0.311	TRUE	0	0	0	2	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	3	26	COL1A1	13462	chr17:48266313:-	FN1	64049	chr2:216236708:-	INCL_NON_REF_SPLICE	YES	14046	25118	0	0	0.0333	0.2888	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0	0	0.3221	TRUE	0	0	0	8	0	FALSE	ACH-000229
HS822T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	8	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.0889	0.0444	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS822T_FIBROBLAST	0.86	1	0.1333	FALSE	407	2205	196	549	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	4	19	COL1A1	7118	chr17:48272657:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	15339	23930	0	0	0.0444	0.2111	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0	0	0.2555	TRUE	0	0	0	15	0	FALSE	ACH-000229
HS822T_FIBROBLAST	MT-ND6--MT-TE	8	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0889	0.0222	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS822T_FIBROBLAST	1	1	0.1111	FALSE	499	1288	110	792	0	FALSE	ACH-000229
HS822T_FIBROBLAST	ABI3BP--MT-ND4L	8	1	ABI3BP	62785	chr3:100489642:-	MT-ND4L	73487	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1241	0	0.01	1	0.0889	0.0111	ABI3BP->ABI_family_member_3_binding_protein,chr3:100468000-100712359:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS822T_FIBROBLAST	0.01	1	0.1	FALSE	0	0	0	2	0	FALSE	ACH-000229
HS822T_FIBROBLAST	MT-ND6--MT-TE	6	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0.1	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS822T_FIBROBLAST	1	1	0.1667	FALSE	499	1288	110	792	0	FALSE	ACH-000229
HS822T_FIBROBLAST	CTGF--MT2A	8	0	CTGF	1166	chr6:132272348:-	MT2A	7582	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0889	0	CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS822T_FIBROBLAST	1	1	0.0889	TRUE	0	0	0	3	0	TRUE	ACH-000229
HS822T_FIBROBLAST	CTGF--TPM2	8	0	CTGF	1143	chr6:132272371:-	TPM2	8296	chr9:35689920:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0889	0	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS822T_FIBROBLAST	1	1	0.0889	TRUE	0	0	0	2	0	TRUE	ACH-000229
HS822T_FIBROBLAST	KIAA1199--TGFBI	8	0	KIAA1199	13288	chr15:81199062:+	TGFBI	45581	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0889	0	KIAA1199->chr15:81071684-81244117:+,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS822T_FIBROBLAST	1	1	0.0889	TRUE	0	0	0	1	0	TRUE	ACH-000229
HS822T_FIBROBLAST	C15orf57--CBX3	7	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	27	12	0.27	0.45	0.0778	0.0333	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS822T_FIBROBLAST	0.27	0.45	0.1111	TRUE	267	562	48	632	0	FALSE	ACH-000229
HS822T_FIBROBLAST	FN1--COL1A1	4	14	FN1	18663	chr2:216272012:-	COL1A1	64011	chr17:48269699:-	INCL_NON_REF_SPLICE	NO	16844	14236	0	0	0.0444	0.1555	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS822T_FIBROBLAST	0	0	0.1999	FALSE	0	0	0	3	0	FALSE	ACH-000229
HS822T_FIBROBLAST	CHSY3--HSPA8P4	6	4	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	38	0	0.21	1	0.0667	0.0444	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	HS822T_FIBROBLAST	0.21	1	0.1111	FALSE	89	26	1	44	0	FALSE	ACH-000229
HS822T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	6	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0667	0.0333	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS822T_FIBROBLAST	0.9	1	0.1	FALSE	467	2173	244	435	0	FALSE	ACH-000229
HS822T_FIBROBLAST	CTGF--TPM2	6	2	CTGF	1236	chr6:132272278:-	TPM2	8316	chr9:35689900:-	INCL_NON_REF_SPLICE	YES	3	15	0.73	0.35	0.0667	0.0222	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS822T_FIBROBLAST	0.35	0.73	0.0889	TRUE	0	0	0	2	0	TRUE	ACH-000229
HS822T_FIBROBLAST	PRR16--CTD-2334D19.1	4	9	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	61	0	0.18	1	0.0444	0.1	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS822T_FIBROBLAST	0.18	1	0.1444	FALSE	21	45	1	60	0	FALSE	ACH-000229
HS822T_FIBROBLAST	SERPINE1--MT-ND4	6	1	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	9088	8675	0	0	0.0667	0.0111	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HS822T_FIBROBLAST	0	0	0.0778	FALSE	1	0	0	29	0	FALSE	ACH-000229
HS822T_FIBROBLAST	FN1--COL1A1	3	10	FN1	20786	chr2:216269307:-	COL1A1	69272	chr17:48264438:-	INCL_NON_REF_SPLICE	YES	17221	14001	0	0	0.0333	0.1111	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS822T_FIBROBLAST	0	0	0.1444	TRUE	0	0	0	1	0	FALSE	ACH-000229
HS822T_FIBROBLAST	FN1--COL1A1	3	9	FN1	16152	chr2:216274659:-	COL1A1	61759	chr17:48271951:-	INCL_NON_REF_SPLICE	NO	17524	13006	0	0	0.0333	0.1	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS822T_FIBROBLAST	0	0	0.1333	FALSE	0	0	0	1	0	FALSE	ACH-000229
HS822T_FIBROBLAST	SERPINE1--MT-ND4	5	1	SERPINE1	4752	chr7:100775245:+	MT-ND4	14095	chrM:11224:+	INCL_NON_REF_SPLICE	YES	9083	8880	0	0	0.0555	0.0111	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HS822T_FIBROBLAST	0	0	0.0666	FALSE	1	0	0	29	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	3	8	COL1A1	4430	chr17:48275345:-	FN1	42004	chr2:216269214:-	INCL_NON_REF_SPLICE	YES	8960	16417	0	0	0.0333	0.0889	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0	0	0.1222	TRUE	0	0	0	1	0	FALSE	ACH-000229
HS822T_FIBROBLAST	FN1--COL1A1	3	8	FN1	17566	chr2:216273109:-	COL1A1	67167	chr17:48266543:-	INCL_NON_REF_SPLICE	YES	16185	15701	0	0	0.0333	0.0889	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS822T_FIBROBLAST	0	0	0.1222	TRUE	0	0	0	4	0	FALSE	ACH-000229
HS822T_FIBROBLAST	FTH1--ACTB	5	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS822T_FIBROBLAST	1	1	0.0555	TRUE	1	0	0	97	0	FALSE	ACH-000229
HS822T_FIBROBLAST	IGFBP7--MT-ND4L	5	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS822T_FIBROBLAST	1	1	0.0555	FALSE	1	0	0	30	0	FALSE	ACH-000229
HS822T_FIBROBLAST	MT-ND6--MT-TE	3	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0.0778	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS822T_FIBROBLAST	1	1	0.1111	FALSE	499	1288	110	792	0	FALSE	ACH-000229
HS822T_FIBROBLAST	MT-ND6--MT-TE	4	3	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0444	0.0333	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS822T_FIBROBLAST	1	1	0.0777	FALSE	499	1288	110	792	0	FALSE	ACH-000229
HS822T_FIBROBLAST	CALD1--AKR1B10	4	2	CALD1	9086	chr7:134552555:+	AKR1B10	45239	chr7:134225799:+	ONLY_REF_SPLICE	YES	4308	3	0	0.67	0.0444	0.0222	CALD1->caldesmon_1,chr7:134429003-134655479:+,AKR1B10->aldo-keto_reductase_family_1,_member_B10_(aldose_reductase),chr7:134212344-134226160:+	HS822T_FIBROBLAST	0	0.67	0.0666	FALSE	0	0	0	1	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL8A1--CMSS1	3	5	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	1392	53	0.01	0.13	0.0333	0.0555	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HS822T_FIBROBLAST	0.01	0.13	0.0888	FALSE	38	10	2	29	0	FALSE	ACH-000229
HS822T_FIBROBLAST	MT-TA--MT-TC	4	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0444	0.0111	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS822T_FIBROBLAST	1	1	0.0555	FALSE	462	80	0	856	0	FALSE	ACH-000229
HS822T_FIBROBLAST	RP11-254I22.1--CTD-2337A12.1	4	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0444	0.0111	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HS822T_FIBROBLAST	1	1	0.0555	TRUE	6	15	3	35	0	FALSE	ACH-000229
HS822T_FIBROBLAST	RP11-290D2.6--THBS1	4	1	RP11-290D2.6	2145	chr13:45915318:+	THBS1	6451	chr15:39874585:+	INCL_NON_REF_SPLICE	YES	0	7478	1	0	0.0444	0.0111	RP11-290D2.6->chr13:45914174-45915318:+,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	HS822T_FIBROBLAST	0	1	0.0555	FALSE	0	0	0	2	0	FALSE	ACH-000229
HS822T_FIBROBLAST	NDC80--HIF1A	4	0	NDC80	4483	chr18:2577356:+	HIF1A	39781	chr14:62211423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0444	0	GTEx_FI:{Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Cells_-_Transformed_fibroblasts=4,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Lung=1,Artery_-_Coronary=1,Esophagus_-_Muscularis=1},NDC80->NDC80_kinetochore_complex_component,chr18:2571510-2616634:+,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	HS822T_FIBROBLAST	1	1	0.0444	TRUE	2	27	1	8	0	FALSE	ACH-000229
HS822T_FIBROBLAST	RP11-254I22.1--CTD-2337A12.1	4	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0444	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HS822T_FIBROBLAST	1	1	0.0444	TRUE	4	2	0	28	0	FALSE	ACH-000229
HS822T_FIBROBLAST	COL1A1--FN1	3	3	COL1A1	4224	chr17:48275551:-	FN1	61577	chr2:216239982:-	INCL_NON_REF_SPLICE	YES	8060	23882	0	0	0.0333	0.0333	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS822T_FIBROBLAST	0	0	0.0666	FALSE	0	0	0	4	0	FALSE	ACH-000229
HS822T_FIBROBLAST	EEF1DP3--FRY	3	2	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	6	3	0.45	0.62	0.0333	0.0222	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS822T_FIBROBLAST	0.45	0.62	0.0555	FALSE	18	26	2	21	0	FALSE	ACH-000229
HS822T_FIBROBLAST	MT-TA--MT-TC	3	1	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0.0111	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS822T_FIBROBLAST	1	1	0.0444	FALSE	462	80	0	856	0	FALSE	ACH-000229
HS822T_FIBROBLAST	CTGF--ACTB	3	0	CTGF	2993	chr6:132270521:-	ACTB	12871	chr7:5567975:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS822T_FIBROBLAST	1	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000229
HS822T_FIBROBLAST	CTGF--ACTB	3	0	CTGF	1136	chr6:132272378:-	ACTB	10623	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS822T_FIBROBLAST	1	1	0.0333	TRUE	0	0	0	9	0	TRUE	ACH-000229
HS822T_FIBROBLAST	CTGF--TPM2	3	0	CTGF	1177	chr6:132272337:-	TPM2	8335	chr9:35689881:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS822T_FIBROBLAST	1	1	0.0333	TRUE	0	0	0	2	0	TRUE	ACH-000229
HS822T_FIBROBLAST	HSPB7--MT-ND4	3	0	HSPB7	4707	chr1:16342069:-	MT-ND4	9721	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	HSPB7->chr1:16340523-16346089:-,heat_shock_protein_family_B_(small)_member_7,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HS822T_FIBROBLAST	1	1	0.0333	FALSE	1	0	0	1	0	FALSE	ACH-000229
HS822T_FIBROBLAST	RP11-155G15.2--RP11-1E3.1	3	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0333	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HS822T_FIBROBLAST	1	1	0.0333	FALSE	46	201	11	112	0	FALSE	ACH-000229
HS822T_FIBROBLAST	VIM--ACTG1	3	0	VIM	2126	chr10:17271383:+	ACTG1	16419	chr17:79477986:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.03%,VIM->chr10:17270258-17279592:+,vimentin,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HS822T_FIBROBLAST	1	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000229
HS822T_FIBROBLAST	AKT3--ADSS	2	3	AKT3	3500	chr1:244006427:-	ADSS	38307	chr1:244601070:-	ONLY_REF_SPLICE	YES	31	70	0.14	0.07	0.0222	0.0333	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,ADSS->adenylosuccinate_synthase,chr1:244571796-244615436:-	HS822T_FIBROBLAST	0.07	0.14	0.0555	TRUE	0	1	0	4	1	TRUE	ACH-000229
HS822T_FIBROBLAST	RP1-34H18.1--NAV3	2	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	NO	0	1	1	0.75	0.0222	0.0111	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HS822T_FIBROBLAST	0.75	1	0.0333	TRUE	254	575	65	124	0	FALSE	ACH-000229
HS822T_FIBROBLAST	LTBP2--EFEMP1	2	0	LTBP2	19759	chr14:74983525:-	EFEMP1	46203	chr2:56098258:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	PROTCLUST,LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2,EFEMP1->EGF_containing_fibulin-like_extracellular_matrix_protein_1,chr2:56093102-56151274:-	HS822T_FIBROBLAST	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000229
HS822T_FIBROBLAST	MIR210HG--DNM3OS	2	0	MIR210HG	1106	chr11:568352:-	DNM3OS	7156	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	HGNC_GENEFAM,MIR210HG->MIR210_host_gene,chr11:565660-568457:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	HS822T_FIBROBLAST	1	1	0.0222	TRUE	0	2	0	3	2	TRUE	ACH-000229
HS822T_FIBROBLAST	RP11-166D19.1--DNM3OS	2	0	RP11-166D19.1	5868	chr11:121971082:-	DNM3OS	18442	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx_FI:{Ovary=[count:4=pct:7.5],Blood_Vessel=[count:3=pct:0.8],Thyroid=[count:2=pct:1.1],Uterus=[count:1=pct:2.3],Esophagus=[count:1=pct:0.2]},RP11-166D19.1->chr11:121899063-121987031:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	HS822T_FIBROBLAST	1	1	0.0222	TRUE	11	20	1	11	0	FALSE	ACH-000229
HS822T_FIBROBLAST	TSTD3--PNISR	2	0	TSTD3	1455	chr6:99969023:+	PNISR	16787	chr6:99854044:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	LOCAL_INVERSION:+:-:[95362],TSTD3->chr6:99968569-99979794:+,thiosulfate_sulfurtransferase_(rhodanese)-like_domain_containing_3,PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-	HS822T_FIBROBLAST	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000229
HS822T_FIBROBLAST	CTIF--SMAD7	1	1	CTIF	15931	chr18:46288060:+	SMAD7	32851	chr18:46448280:-	ONLY_REF_SPLICE	YES	106	67	0.02	0.03	0.0111	0.0111	GTEx_v2:{count=3;pct=0.03%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Heart_-_Left_Ventricle=1},LOCAL_INVERSION:+:-:[56635],CTIF->CBP80/20-dependent_translation_initiation_factor,Oncogene{Bushman},chr18:46065417-46389588:+,SMAD7->SMAD_family_member_7,chr18:46446223-46477081:-	HS822T_FIBROBLAST	0.02	0.03	0.0222	TRUE	1	0	0	1	0	FALSE	ACH-000229
HS822T_FIBROBLAST	FBN1--SCUBE3	1	1	FBN1	57142	chr15:48725063:-	SCUBE3	76613	chr6:35196391:+	ONLY_REF_SPLICE	YES	3057	586	0	0	0.0111	0.0111	FBN1->chr15:48700503-48938046:-,fibrillin_1,SCUBE3->chr6:35182190-35220856:+,signal_peptide,_CUB_domain_and_EGF_like_domain_containing_3	HS822T_FIBROBLAST	0	0	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000229
HS822T_FIBROBLAST	IGFBP7--TIMP3	1	1	IGFBP7	1509	chr4:57976043:-	TIMP3	13549	chr22:33254004:+	ONLY_REF_SPLICE	YES	3695	3826	0	0	0.0111	0.0111	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+	HS822T_FIBROBLAST	0	0	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000229
HS822T_FIBROBLAST	KIAA1199--GNAS	1	1	KIAA1199	12229	chr15:81188401:+	GNAS	52178	chr20:57470667:+	ONLY_REF_SPLICE	NO	3762	690	0	0	0.0111	0.0111	KIAA1199->chr15:81071684-81244117:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HS822T_FIBROBLAST	0	0	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000229
HUH7_LIVER	RTN3--PACS1	172	198	RTN3	1333	chr11:63449250:+	PACS1	23636	chr11:65960957:+	ONLY_REF_SPLICE	YES	416	59	0.47	0.86	1.9176	2.2075	RTN3->chr11:63448918-63527363:+,reticulon_3,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	HUH7_LIVER	0.47	0.86	4.1251	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	IGFBP7--PCAT4	175	60	IGFBP7	1509	chr4:57976043:-	PCAT4	11409	chr4:80782444:+	ONLY_REF_SPLICE	YES	42	0	0.85	1	1.951	0.6689	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,PCAT4->chr4:80748625-80798924:+,prostate_cancer_associated_transcript_4_(non-protein_coding)	HUH7_LIVER	0.85	1	2.6199	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	GAREM--ACN9	111	30	GAREM	4540	chr18:29890156:-	ACN9	24120	chr7:96810324:+	ONLY_REF_SPLICE	YES	2	124	0.99	0.53	1.2375	0.3345	GAREM->chr18:29704840-30050447:-,ACN9->chr7:96745902-96811075:+	HUH7_LIVER	0.53	0.99	1.572	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	TIMM23B--LINC00843	59	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.6578	0.301	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HUH7_LIVER	0.99	1	0.9588	TRUE	508	994	45	981	0	FALSE	ACH-000480
HUH7_LIVER	WI2-1896O14.1--RP11-353N4.1	60	16	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	1	1	0.99	0.6689	0.1784	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	HUH7_LIVER	0.99	1	0.8473	TRUE	361	258	24	38	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO2	62	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	50	2	0.56	0.97	0.6912	0.0223	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH7_LIVER	0.56	0.97	0.7135	FALSE	59	21	0	114	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND6--MT-TE	47	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.524	0.0334	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH7_LIVER	1	1	0.5574	FALSE	499	1288	110	792	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ND4L	3	157	MT-ND4	1180	chrM:10939:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	18	0	0.9	1	0.0334	1.7504	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH7_LIVER	0.9	1	1.7838	FALSE	344	826	44	306	0	FALSE	ACH-000480
HUH7_LIVER	SORD--C15orf43	35	24	SORD	1246	chr15:45315547:+	C15orf43	23000	chr15:45258356:+	ONLY_REF_SPLICE	YES	184	14	0.24	0.81	0.3902	0.2676	LOCAL_REARRANGEMENT:+:[43875],SORD->chr15:45315302-45369383:+,sorbitol_dehydrogenase,C15orf43->chr15:45248900-45271427:+,chromosome_15_open_reading_frame_43	HUH7_LIVER	0.24	0.81	0.6578	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	FIP1L1--RP11-25H12.1	35	12	FIP1L1	8584	chr4:54266006:+	RP11-25H12.1	35683	chr4:66988074:+	ONLY_REF_SPLICE	YES	89	15	0.35	0.76	0.3902	0.1338	FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1,RP11-25H12.1->chr4:66864564-67015730:+	HUH7_LIVER	0.35	0.76	0.524	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ND4L	9	116	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	5621	0	0.02	1	0.1003	1.2933	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH7_LIVER	0.02	1	1.3936	FALSE	344	827	44	306	0	FALSE	ACH-000480
HUH7_LIVER	ATP6V0D1--RBM19	30	12	ATP6V0D1	1281	chr16:67514860:-	RBM19	42072	chr12:114296701:-	ONLY_REF_SPLICE	YES	209	36	0.17	0.54	0.3345	0.1338	ATP6V0D1->ATPase_H+_transporting_V0_subunit_d1,chr16:67471917-67515140:-,RBM19->RNA_binding_motif_protein_19,chr12:114254543-114404176:-	HUH7_LIVER	0.17	0.54	0.4683	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	ANKIB1--DTX2P1	32	1	ANKIB1	1286	chr7:91875833:+	DTX2P1	36118	chr7:76629626:+	ONLY_REF_SPLICE	YES	6	5	0.85	0.87	0.3568	0.0111	ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	HUH7_LIVER	0.85	0.87	0.3679	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ND4L	4	112	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	87	0	0.57	1	0.0446	1.2487	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH7_LIVER	0.57	1	1.2933	FALSE	344	827	44	306	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ND4L	4	111	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.0446	1.2375	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH7_LIVER	0.97	1	1.2821	FALSE	344	821	44	306	0	FALSE	ACH-000480
HUH7_LIVER	SORD--C15orf43	22	38	SORD	1246	chr15:45315547:+	C15orf43	20798	chr15:45250571:+	ONLY_REF_SPLICE	YES	184	0	0.25	1	0.2453	0.4237	LOCAL_REARRANGEMENT:+:[43875],SORD->chr15:45315302-45369383:+,sorbitol_dehydrogenase,C15orf43->chr15:45248900-45271427:+,chromosome_15_open_reading_frame_43	HUH7_LIVER	0.25	1	0.669	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	RTN3--PACS1	2	110	RTN3	1333	chr11:63449250:+	PACS1	24724	chr11:65977833:+	ONLY_REF_SPLICE	YES	416	75	0.21	0.6	0.0223	1.2264	RTN3->chr11:63448918-63527363:+,reticulon_3,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	HUH7_LIVER	0.21	0.6	1.2487	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	RP11-6N13.1--CTD-2374C24.1	26	8	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2899	0.0892	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	HUH7_LIVER	1	1	0.3791	TRUE	5	4	0	46	0	FALSE	ACH-000480
HUH7_LIVER	DTX2P1--ANKIB1	24	14	DTX2P1	10622	chr7:76635092:+	ANKIB1	24407	chr7:91924203:+	ONLY_REF_SPLICE	YES	3	8	0.93	0.83	0.2676	0.1561	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+	HUH7_LIVER	0.83	0.93	0.4237	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	TIMM23--RP11-464F9.1	26	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	218	1	0.11	0.96	0.2899	0.0111	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HUH7_LIVER	0.11	0.96	0.301	TRUE	519	3926	326	965	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ATP8	25	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2787	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH7_LIVER	1	1	0.2787	FALSE	230	193	14	283	0	FALSE	ACH-000480
HUH7_LIVER	RP11-680G10.1--GSE1	24	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	48	1	0.35	0.2676	0.0223	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HUH7_LIVER	0.35	1	0.2899	TRUE	465	1949	224	605	0	FALSE	ACH-000480
HUH7_LIVER	IGFBP7--PCAT4	11	53	IGFBP7	1484	chr4:57976068:-	PCAT4	11409	chr4:80782444:+	INCL_NON_REF_SPLICE	YES	44	0	0.59	1	0.1226	0.5909	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,PCAT4->chr4:80748625-80798924:+,prostate_cancer_associated_transcript_4_(non-protein_coding)	HUH7_LIVER	0.59	1	0.7135	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	PLOD2--PLSCR4	22	9	PLOD2	9980	chr3:145820542:-	PLSCR4	33554	chr3:145924548:-	ONLY_REF_SPLICE	YES	274	5	0.1	0.86	0.2453	0.1003	LOCAL_REARRANGEMENT:-:[28686],PLOD2->chr3:145787227-145881440:-,procollagen-lysine,2-oxoglutarate_5-dioxygenase_2,PLSCR4->chr3:145910126-145968966:-,phospholipid_scramblase_4	HUH7_LIVER	0.1	0.86	0.3456	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ND4L	15	27	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	530	0	0.07	1	0.1672	0.301	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH7_LIVER	0.07	1	0.4682	FALSE	344	827	44	306	0	FALSE	ACH-000480
HUH7_LIVER	UQCC1--GDF5OS	20	1	UQCC1	1202	chr20:33999743:-	GDF5OS	24899	chr20:34020829:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.223	0.0111	LOCAL_INVERSION:-:+:[20883],UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,GDF5OS->chr20:34020827-34023248:+,growth_differentiation_factor_5_opposite_strand	HUH7_LIVER	1	1	0.2341	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	MT-ND6--MT-TE	16	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.1784	0.1672	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH7_LIVER	0.94	1	0.3456	FALSE	499	1288	110	792	0	FALSE	ACH-000480
HUH7_LIVER	SORD--C15orf43	10	39	SORD	1246	chr15:45315547:+	C15orf43	19716	chr15:45249094:+	ONLY_REF_SPLICE	YES	184	0	0.21	1	0.1115	0.4348	LOCAL_REARRANGEMENT:+:[43875],SORD->chr15:45315302-45369383:+,sorbitol_dehydrogenase,C15orf43->chr15:45248900-45271427:+,chromosome_15_open_reading_frame_43	HUH7_LIVER	0.21	1	0.5463	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	RNF185--SMTN	17	7	RNF185	4463	chr22:31588688:+	SMTN	15531	chr22:31476436:+	ONLY_REF_SPLICE	YES	77	0	0.24	1	0.1895	0.078	LOCAL_REARRANGEMENT:+:[55425],RNF185->chr22:31556168-31603005:+,ring_finger_protein_185,SMTN->chr22:31460091-31500743:+,smoothelin	HUH7_LIVER	0.24	1	0.2675	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	SCARB1--UBC	17	7	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	688	22	0.03	0.52	0.1895	0.078	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	HUH7_LIVER	0.03	0.52	0.2675	TRUE	55	66	6	101	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ND4L	7	38	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	10668	0	0	1	0.078	0.4237	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH7_LIVER	0	1	0.5017	FALSE	328	800	43	304	0	FALSE	ACH-000480
HUH7_LIVER	RP11-444D3.1--SOX5	15	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	4	1	0.82	0.1672	0.0334	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HUH7_LIVER	0.82	1	0.2006	TRUE	477	1352	189	275	0	FALSE	ACH-000480
HUH7_LIVER	SORD--C15orf43	8	28	SORD	1246	chr15:45315547:+	C15orf43	21938	chr15:45253721:+	ONLY_REF_SPLICE	YES	184	6	0.16	0.86	0.0892	0.3122	LOCAL_REARRANGEMENT:+:[43875],SORD->chr15:45315302-45369383:+,sorbitol_dehydrogenase,C15orf43->chr15:45248900-45271427:+,chromosome_15_open_reading_frame_43	HUH7_LIVER	0.16	0.86	0.4014	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	IPO11--KIAA0825	14	3	IPO11	32813	chr5:61857084:+	KIAA0825	73974	chr5:93489829:-	ONLY_REF_SPLICE	YES	42	0	0.29	1	0.1561	0.0334	{Klijn_CCL:Liver=1},IPO11->chr5:61699799-61924409:+,importin_11,KIAA0825->KIAA0825,chr5:93488671-93954309:-	HUH7_LIVER	0.29	1	0.1895	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	MT-ND6--MT-TE	14	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1561	0.0334	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH7_LIVER	1	1	0.1895	FALSE	499	1288	110	792	0	FALSE	ACH-000480
HUH7_LIVER	MT-TA--MT-TC	14	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1561	0.0223	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUH7_LIVER	1	1	0.1784	FALSE	462	80	0	856	0	FALSE	ACH-000480
HUH7_LIVER	ACN9--KIAA1045	11	12	ACN9	2308	chr7:96747209:+	KIAA1045	11219	chr9:34971292:+	ONLY_REF_SPLICE	YES	118	0	0.16	1	0.1226	0.1338	ACN9->chr7:96745902-96811075:+,KIAA1045->chr9:34957484-34982541:+	HUH7_LIVER	0.16	1	0.2564	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	MT-ND6--MT-TE	9	18	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1003	0.2007	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH7_LIVER	1	1	0.301	FALSE	499	1288	110	792	0	FALSE	ACH-000480
HUH7_LIVER	RP11-680G10.1--GSE1	12	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.64	0.1338	0.0669	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HUH7_LIVER	0.64	1	0.2007	TRUE	458	1351	185	561	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ND4L	3	38	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	18	0	0.69	1	0.0334	0.4237	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH7_LIVER	0.69	1	0.4571	FALSE	344	826	44	306	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ND4L	3	38	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	27	0	0.6	1	0.0334	0.4237	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH7_LIVER	0.6	1	0.4571	FALSE	344	826	44	306	0	FALSE	ACH-000480
HUH7_LIVER	NRIP1--AF127936.7	12	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1338	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HUH7_LIVER	1	1	0.1338	FALSE	292	1546	117	613	0	FALSE	ACH-000480
HUH7_LIVER	RP11-96H19.1--RP11-446N19.1	10	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	3	1	0.85	0.1115	0.078	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUH7_LIVER	0.85	1	0.1895	FALSE	515	4851	409	746	0	FALSE	ACH-000480
HUH7_LIVER	RP11-319G9.5--WWOX	10	4	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	7	1	0.67	0.1115	0.0446	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	HUH7_LIVER	0.67	1	0.1561	FALSE	154	425	28	76	0	FALSE	ACH-000480
HUH7_LIVER	RP11-96H19.1--RP11-446N19.1	8	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0892	0.1226	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUH7_LIVER	1	1	0.2118	FALSE	407	2205	196	549	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ND4L	3	27	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	58	0	0.34	1	0.0334	0.301	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH7_LIVER	0.34	1	0.3344	FALSE	344	827	44	306	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO2	9	2	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	48	2	0.19	0.85	0.1003	0.0223	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH7_LIVER	0.19	0.85	0.1226	FALSE	59	21	0	114	0	FALSE	ACH-000480
HUH7_LIVER	SORD--C15orf43	7	9	SORD	1246	chr15:45315547:+	C15orf43	24086	chr15:45266065:+	ONLY_REF_SPLICE	YES	184	11	0.08	0.59	0.078	0.1003	LOCAL_REARRANGEMENT:+:[43875],SORD->chr15:45315302-45369383:+,sorbitol_dehydrogenase,C15orf43->chr15:45248900-45271427:+,chromosome_15_open_reading_frame_43	HUH7_LIVER	0.08	0.59	0.1783	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	MT-ND6--MT-TE	3	23	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0334	0.2564	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH7_LIVER	0.93	1	0.2898	FALSE	499	1288	110	792	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ND4L	5	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	68	0	0.21	1	0.0557	0.1449	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH7_LIVER	0.21	1	0.2006	FALSE	344	827	44	306	0	FALSE	ACH-000480
HUH7_LIVER	RP4-565E6.1--HYDIN	7	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.078	0.0446	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HUH7_LIVER	1	1	0.1226	TRUE	456	1387	91	133	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO1	7	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	10218	20861	0	0	0.078	0.0111	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH7_LIVER	0	0	0.0891	FALSE	183	104	9	328	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND6--MT-TE	7	1	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.078	0.0111	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH7_LIVER	1	1	0.0891	FALSE	499	1288	110	792	0	FALSE	ACH-000480
HUH7_LIVER	ACN9--KIAA1045	4	12	ACN9	3388	chr7:96765779:+	KIAA1045	11219	chr9:34971292:+	ONLY_REF_SPLICE	YES	128	0	0.11	1	0.0446	0.1338	ACN9->chr7:96745902-96811075:+,KIAA1045->chr9:34957484-34982541:+	HUH7_LIVER	0.11	1	0.1784	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	MT-ND6--MT-TE	3	15	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0334	0.1672	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH7_LIVER	0.95	1	0.2006	FALSE	499	1288	110	792	0	FALSE	ACH-000480
HUH7_LIVER	CALM3--MT-ND4L	6	2	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2007	0	0	1	0.0669	0.0223	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH7_LIVER	0	1	0.0892	FALSE	1	1	0	107	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ATP8	6	2	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	12894	1	0	0.89	0.0669	0.0223	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH7_LIVER	0	0.89	0.0892	FALSE	231	217	16	283	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ND4L	6	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0669	0.0223	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH7_LIVER	1	1	0.0892	FALSE	344	821	44	306	0	FALSE	ACH-000480
HUH7_LIVER	ACN9--KIAA1045	3	13	ACN9	4534	chr7:96772130:+	KIAA1045	11219	chr9:34971292:+	ONLY_REF_SPLICE	YES	131	0	0.11	1	0.0334	0.1449	ACN9->chr7:96745902-96811075:+,KIAA1045->chr9:34957484-34982541:+	HUH7_LIVER	0.11	1	0.1783	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO1	6	1	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	10493	18956	0	0	0.0669	0.0111	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH7_LIVER	0	0	0.078	FALSE	183	104	9	328	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ND4L	3	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	27	0	0.37	1	0.0334	0.1449	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH7_LIVER	0.37	1	0.1783	FALSE	344	826	44	306	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ATP8	5	4	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	12605	215	0	0.04	0.0557	0.0446	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH7_LIVER	0	0.04	0.1003	FALSE	231	217	16	283	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0669	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH7_LIVER	1	1	0.0669	FALSE	499	1288	110	792	0	FALSE	ACH-000480
HUH7_LIVER	RP11-353N4.6--SEC22B	5	4	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	49	346	0.16	0.03	0.0557	0.0446	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HUH7_LIVER	0.03	0.16	0.1003	TRUE	33	36	9	21	0	FALSE	ACH-000480
HUH7_LIVER	FIP1L1--RP11-25H12.1	4	7	FIP1L1	8584	chr4:54266006:+	RP11-25H12.1	36756	chr4:67001106:+	ONLY_REF_SPLICE	YES	89	10	0.11	0.52	0.0446	0.078	FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1,RP11-25H12.1->chr4:66864564-67015730:+	HUH7_LIVER	0.11	0.52	0.1226	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ATP8	5	3	MT-ND4	1833	chrM:11592:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	12668	1	0	0.89	0.0557	0.0334	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH7_LIVER	0	0.89	0.0891	FALSE	231	217	16	283	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ATP8	5	1	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	14926	1543	0	0	0.0557	0.0111	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH7_LIVER	0	0	0.0668	FALSE	231	205	14	283	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ATP8	5	1	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	14656	0	0	1	0.0557	0.0111	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH7_LIVER	0	1	0.0668	FALSE	231	217	16	283	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO1	5	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH7_LIVER	1	1	0.0557	FALSE	183	104	9	328	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO2	5	0	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH7_LIVER	1	1	0.0557	FALSE	59	21	0	114	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ATP8	5	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH7_LIVER	1	1	0.0557	FALSE	230	198	14	283	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ATP8	4	4	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4147	64	0	0.11	0.0446	0.0446	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH7_LIVER	0	0.11	0.0892	FALSE	218	210	16	281	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ATP8	5	0	MT-ND4	1003	chrM:10762:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH7_LIVER	1	1	0.0557	FALSE	230	189	14	283	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO1	4	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3169	21660	0	0	0.0446	0.0334	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH7_LIVER	0	0	0.078	FALSE	183	104	9	328	0	FALSE	ACH-000480
HUH7_LIVER	RP11-96H19.1--RP11-446N19.1	3	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	3	1	0.77	0.0334	0.078	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUH7_LIVER	0.77	1	0.1114	FALSE	467	2173	244	435	0	FALSE	ACH-000480
HUH7_LIVER	AFP--ALB	4	2	AFP	8792	chr4:74309161:+	ALB	32854	chr4:74283248:+	ONLY_REF_SPLICE	YES	16795	5862	0	0	0.0446	0.0223	DGD_PARALOGS,PROTCLUST,LOCAL_REARRANGEMENT:+:[9726],AFP->alpha_fetoprotein,chr4:74296855-74321891:+,ALB->albumin,chr4:74262831-74287129:+	HUH7_LIVER	0	0	0.0669	FALSE	0	0	0	1	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO2	4	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	50	2	0.11	0.75	0.0446	0.0223	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH7_LIVER	0.11	0.75	0.0669	FALSE	59	21	0	114	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ATP8	3	6	MT-ND4	2240	chrM:11999:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	2771	1	0	0.9	0.0334	0.0669	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH7_LIVER	0	0.9	0.1003	FALSE	216	209	16	281	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ATP8	4	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13210	7	0	0.46	0.0446	0.0223	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH7_LIVER	0	0.46	0.0669	FALSE	231	217	16	283	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO1	4	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	9633	19467	0	0	0.0446	0.0111	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH7_LIVER	0	0	0.0557	FALSE	183	104	9	328	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO1	4	1	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	YES	10028	19160	0	0	0.0446	0.0111	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH7_LIVER	0	0	0.0557	FALSE	183	104	9	328	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO1	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	NO	9997	21230	0	0	0.0446	0.0111	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH7_LIVER	0	0	0.0557	FALSE	183	104	9	328	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ATP8	4	1	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	14632	1	0	0.83	0.0446	0.0111	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH7_LIVER	0	0.83	0.0557	FALSE	231	217	16	283	0	FALSE	ACH-000480
HUH7_LIVER	ANKIB1--PTPRN2	3	4	ANKIB1	14894	chr7:91991587:+	PTPRN2	34411	chr7:158109624:-	ONLY_REF_SPLICE	YES	30	2	0.19	0.78	0.0334	0.0446	{Klijn_CCL:Liver=1},ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+,PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2	HUH7_LIVER	0.19	0.78	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO1	3	4	MT-ATP6	1444	chrM:8970:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	10094	18946	0	0	0.0334	0.0446	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH7_LIVER	0	0	0.078	FALSE	183	104	9	328	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO2	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH7_LIVER	1	1	0.0446	FALSE	59	21	0	114	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ATP8	4	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH7_LIVER	1	1	0.0446	FALSE	230	198	14	283	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ATP8	4	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH7_LIVER	1	1	0.0446	FALSE	231	205	14	283	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ATP8	3	4	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	6403	549	0	0.01	0.0334	0.0446	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH7_LIVER	0	0.01	0.078	FALSE	231	215	16	283	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND6--MT-TE	4	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH7_LIVER	1	1	0.0446	FALSE	499	1288	110	792	0	FALSE	ACH-000480
HUH7_LIVER	TUBB4B--FTH1	4	0	TUBB4B	1128	chr9:140135792:+	FTH1	6697	chr11:61734931:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	HUH7_LIVER	1	1	0.0446	TRUE	0	0	0	6	0	TRUE	ACH-000480
HUH7_LIVER	YIPF6--BAZ1B	4	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	HUH7_LIVER	1	1	0.0446	TRUE	1	23	1	24	8	FALSE	ACH-000480
HUH7_LIVER	CTD-2008L17.1--RP11-456O19.2	3	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0334	0.0334	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HUH7_LIVER	0.86	1	0.0668	FALSE	20	187	4	79	0	FALSE	ACH-000480
HUH7_LIVER	RP11-96H19.1--RP11-446N19.1	1	11	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0111	0.1226	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUH7_LIVER	1	1	0.1337	FALSE	192	492	57	212	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO2	3	2	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	43	2	0.1	0.71	0.0334	0.0223	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH7_LIVER	0.1	0.71	0.0557	FALSE	59	21	0	114	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO2	3	2	MT-ATP6	1135	chrM:8661:+	MT-CO2	4824	chrM:7728:+	INCL_NON_REF_SPLICE	YES	45	2	0.1	0.71	0.0334	0.0223	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH7_LIVER	0.1	0.71	0.0557	FALSE	59	21	0	114	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO1	3	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	12150	19536	0	0	0.0334	0.0111	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH7_LIVER	0	0	0.0445	FALSE	183	104	9	328	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO1	3	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10350	21379	0	0	0.0334	0.0111	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH7_LIVER	0	0	0.0445	FALSE	183	104	9	328	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO1	3	1	MT-ATP6	1132	chrM:8658:+	MT-CO1	5255	chrM:6477:+	INCL_NON_REF_SPLICE	YES	10429	18706	0	0	0.0334	0.0111	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH7_LIVER	0	0	0.0445	FALSE	183	104	9	328	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO1	3	1	MT-ATP6	1121	chrM:8647:+	MT-CO1	4698	chrM:5920:+	INCL_NON_REF_SPLICE	YES	10292	0	0	1	0.0334	0.0111	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH7_LIVER	0	1	0.0445	FALSE	182	97	9	327	0	FALSE	ACH-000480
HUH7_LIVER	RNF185--SMTN	2	5	RNF185	3444	chr22:31583256:+	SMTN	15531	chr22:31476436:+	ONLY_REF_SPLICE	NO	77	0	0.08	1	0.0223	0.0557	LOCAL_REARRANGEMENT:+:[55425],RNF185->chr22:31556168-31603005:+,ring_finger_protein_185,SMTN->chr22:31460091-31500743:+,smoothelin	HUH7_LIVER	0.08	1	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	10	0.5	0.29	0.0334	0.0111	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HUH7_LIVER	0.29	0.5	0.0445	FALSE	16	356	14	466	0	FALSE	ACH-000480
HUH7_LIVER	RP11-1L12.3--SLC5A12	1	9	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	14042	chr11:26737901:-	ONLY_REF_SPLICE	YES	10	7	0.5	0.59	0.0111	0.1003	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	HUH7_LIVER	0.5	0.59	0.1114	TRUE	0	4	0	4	3	FALSE	ACH-000480
HUH7_LIVER	RP11-1L12.3--SLC5A12	1	9	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	NO	10	7	0.5	0.59	0.0111	0.1003	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	HUH7_LIVER	0.5	0.59	0.1114	TRUE	3	101	0	60	0	FALSE	ACH-000480
HUH7_LIVER	AFP--ALB	3	0	AFP	17109	chr4:74321007:+	ALB	36415	chr4:74286809:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	DGD_PARALOGS,PROTCLUST,LOCAL_REARRANGEMENT:+:[9726],AFP->alpha_fetoprotein,chr4:74296855-74321891:+,ALB->albumin,chr4:74262831-74287129:+	HUH7_LIVER	1	1	0.0334	TRUE	0	1	0	1	1	TRUE	ACH-000480
HUH7_LIVER	FGA--FGB	3	0	FGA	1133	chr4:155511786:-	FGB	13235	chr4:155486960:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	GTEx&tcga_normals:62/3694=1.68%,GTEx:0.84%,GTEx_FI:{Liver=[count:3=pct:2.5]},GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},HGNC_GENEFAM,PROTCLUST,LOCAL_INVERSION:-:+:[12040],FGA->chr4:155504278-155511918:-,fibrinogen_alpha_chain,FGB->chr4:155484108-155492238:+,fibrinogen_beta_chain	HUH7_LIVER	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	GAMT--MT-CO2	3	0	GAMT	4825	chr19:1397388:-	MT-CO2	8193	chrM:7656:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	GAMT->chr19:1397091-1401569:-,guanidinoacetate_N-methyltransferase,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH7_LIVER	1	1	0.0334	FALSE	0	0	0	1	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO1	3	0	MT-ATP6	1564	chrM:9090:+	MT-CO1	5965	chrM:7187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH7_LIVER	1	1	0.0334	FALSE	183	104	9	328	0	FALSE	ACH-000480
HUH7_LIVER	MT-ATP6--MT-CO1	3	0	MT-ATP6	1200	chrM:8726:+	MT-CO1	5905	chrM:7127:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH7_LIVER	1	1	0.0334	FALSE	183	104	9	328	0	FALSE	ACH-000480
HUH7_LIVER	MT-ND4--MT-ATP8	3	0	MT-ND4	1164	chrM:10923:+	MT-ATP8	5455	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH7_LIVER	1	1	0.0334	FALSE	230	193	14	283	0	FALSE	ACH-000480
HUH7_LIVER	NCAM2--BOD1L1	3	0	NCAM2	2436	chr21:22519569:+	BOD1L1	41035	chr4:13621691:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	NCAM2->chr21:22370633-22915650:+,neural_cell_adhesion_molecule_2,BOD1L1->biorientation_of_chromosomes_in_cell_division_1_like_1,chr4:13570362-13629347:-	HUH7_LIVER	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	RNF185--SMTN	3	0	RNF185	3444	chr22:31583256:+	SMTN	18232	chr22:31479165:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:+:[55425],RNF185->chr22:31556168-31603005:+,ring_finger_protein_185,SMTN->chr22:31460091-31500743:+,smoothelin	HUH7_LIVER	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	RNF185--SMTN	3	0	RNF185	4463	chr22:31588688:+	SMTN	18232	chr22:31479165:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:+:[55425],RNF185->chr22:31556168-31603005:+,ring_finger_protein_185,SMTN->chr22:31460091-31500743:+,smoothelin	HUH7_LIVER	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	RP11-476K15.1--CTD-2015H3.2	3	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HUH7_LIVER	1	1	0.0334	FALSE	0	46	0	73	0	FALSE	ACH-000480
HUH7_LIVER	AFP--ALB	2	3	AFP	6643	chr4:74306530:+	ALB	23976	chr4:74272346:+	ONLY_REF_SPLICE	YES	14855	3872	0	0	0.0223	0.0334	DGD_PARALOGS,PROTCLUST,LOCAL_REARRANGEMENT:+:[9726],AFP->alpha_fetoprotein,chr4:74296855-74321891:+,ALB->albumin,chr4:74262831-74287129:+	HUH7_LIVER	0	0	0.0557	FALSE	0	0	0	2	0	FALSE	ACH-000480
HUH7_LIVER	RP11-353N4.6--SEC22B	2	2	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	49	343	0.08	0.01	0.0223	0.0223	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HUH7_LIVER	0.01	0.08	0.0446	FALSE	49	42	7	43	0	FALSE	ACH-000480
HUH7_LIVER	AFP--ALB	2	1	AFP	6643	chr4:74306530:+	ALB	30535	chr4:74280752:+	ONLY_REF_SPLICE	YES	14855	5656	0	0	0.0223	0.0111	DGD_PARALOGS,PROTCLUST,LOCAL_REARRANGEMENT:+:[9726],AFP->alpha_fetoprotein,chr4:74296855-74321891:+,ALB->albumin,chr4:74262831-74287129:+	HUH7_LIVER	0	0	0.0334	FALSE	0	0	0	1	0	FALSE	ACH-000480
HUH7_LIVER	CTD-2337A12.1--CAST	2	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	11	1	0.21	0.0223	0.0111	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HUH7_LIVER	0.21	1	0.0334	TRUE	347	1186	183	220	0	FALSE	ACH-000480
HUH7_LIVER	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	4	1	0.43	0.0223	0.0111	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HUH7_LIVER	0.43	1	0.0334	TRUE	274	363	69	150	0	FALSE	ACH-000480
HUH7_LIVER	RP11-6N13.1--CTD-2374C24.1	1	5	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0111	0.0557	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	HUH7_LIVER	1	1	0.0668	TRUE	5	12	0	42	0	FALSE	ACH-000480
HUH7_LIVER	RP4-565E6.1--HYDIN	2	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	3	1	0.5	0.0223	0.0111	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HUH7_LIVER	0.5	1	0.0334	TRUE	84	87	4	41	0	FALSE	ACH-000480
HUH7_LIVER	SPTBN1--ANKRD53	2	1	SPTBN1	4816	chr2:54753703:+	ANKRD53	55313	chr2:71209707:+	ONLY_REF_SPLICE	YES	94	1	0.03	0.75	0.0223	0.0111	SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1,ANKRD53->ankyrin_repeat_domain_53,chr2:71205510-71212626:+	HUH7_LIVER	0.03	0.75	0.0334	TRUE	0	0	0	1	0	FALSE	ACH-000480
HUH7_LIVER	CLDN16--CLDN1	2	0	CLDN16	1121	chr3:190040450:+	CLDN1	16258	chr3:190030825:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	HGNC_GENEFAM,PROTCLUST,LOCAL_INVERSION:+:-:[66],CLDN16->chr3:190040330-190129932:+,claudin_16,CLDN1->chr3:190023490-190040264:-,claudin_1	HUH7_LIVER	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	HECTD1--EEF1D	2	0	HECTD1	3008	chr14:31675003:-	EEF1D	58346	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HUH7_LIVER	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	HNRNPA2B1--TTK	2	0	HNRNPA2B1	10520	chr7:26230613:-	TTK	27448	chr6:80741184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,TTK->TTK_protein_kinase,chr6:80713604-80752244:+	HUH7_LIVER	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	IGFBP7--PCAT4	2	0	IGFBP7	1509	chr4:57976043:-	PCAT4	14367	chr4:80798769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,PCAT4->chr4:80748625-80798924:+,prostate_cancer_associated_transcript_4_(non-protein_coding)	HUH7_LIVER	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HUH7_LIVER	1	1	0.0223	FALSE	125	705	46	456	0	FALSE	ACH-000480
HUH7_LIVER	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HUH7_LIVER	1	1	0.0223	TRUE	1	10	0	18	0	TRUE	ACH-000480
HUH7_LIVER	RNF185--SMTN	2	0	RNF185	3444	chr22:31583256:+	SMTN	21443	chr22:31483951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LOCAL_REARRANGEMENT:+:[55425],RNF185->chr22:31556168-31603005:+,ring_finger_protein_185,SMTN->chr22:31460091-31500743:+,smoothelin	HUH7_LIVER	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	RNF185--SMTN	2	0	RNF185	3444	chr22:31583256:+	SMTN	15757	chr22:31476662:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LOCAL_REARRANGEMENT:+:[55425],RNF185->chr22:31556168-31603005:+,ring_finger_protein_185,SMTN->chr22:31460091-31500743:+,smoothelin	HUH7_LIVER	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	RP11-476K15.1--CTD-2015H3.2	2	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HUH7_LIVER	1	1	0.0223	FALSE	0	46	0	73	0	FALSE	ACH-000480
HUH7_LIVER	SPECC1L--BID	2	0	SPECC1L	1166	chr22:24666951:+	BID	33927	chr22:18222254:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,BID->BH3_interacting_domain_death_agonist,Oncogene{Bushman},chr22:18216906-18257536:-	HUH7_LIVER	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	AFP--ALB	1	2	AFP	4336	chr4:74302928:+	ALB	27925	chr4:74277713:+	ONLY_REF_SPLICE	YES	8449	4664	0	0	0.0111	0.0223	DGD_PARALOGS,PROTCLUST,LOCAL_REARRANGEMENT:+:[9726],AFP->alpha_fetoprotein,chr4:74296855-74321891:+,ALB->albumin,chr4:74262831-74287129:+	HUH7_LIVER	0	0	0.0334	FALSE	0	0	0	1	0	FALSE	ACH-000480
HUH7_LIVER	DTX2P1--ANKIB1	1	2	DTX2P1	9395	chr7:76633624:+	ANKIB1	24407	chr7:91924203:+	ONLY_REF_SPLICE	NO	4	8	0.43	0.27	0.0111	0.0223	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+	HUH7_LIVER	0.27	0.43	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.13	1	0.0111	0.0223	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HUH7_LIVER	0.13	1	0.0334	FALSE	164	806	69	479	0	FALSE	ACH-000480
HUH7_LIVER	PIEZO2--AC005522.7	1	2	PIEZO2	2160	chr18:11066126:-	AC005522.7	71281	chr7:76602357:-	ONLY_REF_SPLICE	NO	11	0	0.21	1	0.0111	0.0223	PIEZO2->chr18:10666480-11148587:-,piezo_type_mechanosensitive_ion_channel_component_2,AC005522.7->chr7:76601996-76606278:-	HUH7_LIVER	0.21	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000480
HUH7_LIVER	ARPC3--GPN3	1	1	ARPC3	2304	chr12:110883257:-	GPN3	15547	chr12:110897667:-	ONLY_REF_SPLICE	YES	1132	238	0	0.01	0.0111	0.0111	LOCAL_REARRANGEMENT:-:[2062],ARPC3->actin_related_protein_2/3_complex_subunit_3,chr12:110872630-110888227:-,GPN3->GPN-loop_GTPase_3,chr12:110890289-110907073:-	HUH7_LIVER	0	0.01	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000480
HUH7_LIVER	CTD-2008L17.1--RP11-456O19.2	1	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0111	0.0111	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HUH7_LIVER	0.67	1	0.0222	FALSE	33	240	4	98	0	FALSE	ACH-000480
HUH7_LIVER	FNDC3B--PLD1	1	1	FNDC3B	6332	chr3:171851336:+	PLD1	49603	chr3:171507325:-	ONLY_REF_SPLICE	YES	227	23	0.01	0.08	0.0111	0.0111	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Coronary=1,Esophagus_-_Mucosa=1},FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,PLD1->Oncogene{Bushman},chr3:171318195-171528740:-,phospholipase_D1	HUH7_LIVER	0.01	0.08	0.0222	FALSE	0	2	0	4	1	FALSE	ACH-000480
HUH7_LIVER	PIP4K2A--DNAJC1	1	1	PIP4K2A	8276	chr10:22898549:-	DNAJC1	34368	chr10:22095028:-	ONLY_REF_SPLICE	NO	34	120	0.06	0.02	0.0111	0.0111	GTEx&tcga_normals:1/3694=0.03%,PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha,DNAJC1->DnaJ_heat_shock_protein_family_(Hsp40)_member_C1,chr10:22045466-22292698:-	HUH7_LIVER	0.02	0.06	0.0222	TRUE	0	0	0	1	0	FALSE	ACH-000480
HUH7_LIVER	RP11-120D5.1--MID1	1	1	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	10	0.5	0.17	0.0111	0.0111	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HUH7_LIVER	0.17	0.5	0.0222	FALSE	2	31	0	60	0	FALSE	ACH-000480
HUH7_LIVER	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	1875	137	0	0.01	0.0111	0.0111	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	HUH7_LIVER	0	0.01	0.0222	FALSE	6	50	7	115	0	FALSE	ACH-000480
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	FAT1--F11-AS1	94	53	FAT1	8159	chr4:187584453:-	F11-AS1	51016	chr4:187212186:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.0574	0.5962	NEIGHBORS[86786],FAT1->ArcherDX_panel,FAT_atypical_cadherin_1,FoundationOne_panel,Oncogene{Bushman},chr4:187508937-187647876:-,F11-AS1->F11_antisense_RNA_1,chr4:187207248-187422151:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	1.6536	FALSE	0	0	0	1	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	81	17	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9111	0.1912	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	1.1023	FALSE	462	80	0	856	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	63	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7087	0.2587	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.9674	TRUE	508	994	45	981	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	49	2	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	17808	1421	0	0.03	0.5512	0.0225	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0	0.03	0.5737	FALSE	231	217	16	283	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	RNASE10--ATP13A3	32	21	RNASE10	1483	chr14:20974178:+	ATP13A3	9771	chr3:194206564:-	ONLY_REF_SPLICE	YES	48	3	0.52	0.95	0.36	0.2362	RNASE10->Oncogene{Bushman},chr14:20973696-20979328:+,ribonuclease_A_family_member_10_(inactive),ATP13A3->ATPase_13A3,chr3:194123401-194219093:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.52	0.95	0.5962	TRUE	0	1	0	1	1	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	36	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	260	2	0.13	0.95	0.4049	0.0337	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.13	0.95	0.4386	TRUE	519	3926	326	965	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	RNASE10--ATP13A3	22	19	RNASE10	1483	chr14:20974178:+	ATP13A3	12169	chr3:194182965:-	ONLY_REF_SPLICE	YES	48	16	0.46	0.72	0.2475	0.2137	RNASE10->Oncogene{Bushman},chr14:20973696-20979328:+,ribonuclease_A_family_member_10_(inactive),ATP13A3->ATPase_13A3,chr3:194123401-194219093:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.46	0.72	0.4612	TRUE	0	1	0	1	1	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	21	5	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	24	17	0.52	0.6	0.2362	0.0562	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.52	0.6	0.2924	TRUE	181	1564	124	196	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	OR51S1--TP53I11	22	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2475	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.2475	TRUE	402	216	10	229	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	20	5	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.78	1	0.225	0.0562	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.78	1	0.2812	FALSE	292	1546	117	613	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	19	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2137	0.0225	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.2362	FALSE	416	2512	207	587	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	17	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.1912	0.09	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.89	1	0.2812	FALSE	499	1288	110	792	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	FAT1--F11-AS1	16	10	FAT1	8159	chr4:187584453:-	F11-AS1	53868	chr4:187207420:-	ONLY_REF_SPLICE	YES	0	2	1	0.93	0.18	0.1125	NEIGHBORS[86786],FAT1->ArcherDX_panel,FAT_atypical_cadherin_1,FoundationOne_panel,Oncogene{Bushman},chr4:187508937-187647876:-,F11-AS1->F11_antisense_RNA_1,chr4:187207248-187422151:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.93	1	0.2925	FALSE	0	0	0	1	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	15	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	21	1	0.49	0.1687	0.0562	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.49	1	0.2249	TRUE	465	1949	224	605	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	11	20	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	27	0	0.53	1	0.1237	0.225	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.53	1	0.3487	FALSE	164	806	69	479	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	15	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1687	0.0225	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.1912	FALSE	499	1288	110	792	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	ZNF654--HMGB2	15	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1687	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.1687	TRUE	0	0	0	518	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	IFI27--MT-ND4L	12	1	IFI27	8929	chr14:94582869:+	MT-ND4L	12095	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1729	0	0.01	1	0.135	0.0112	IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.1462	FALSE	0	0	0	13	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	KRT5--MT-CO3	11	3	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	6236	15075	0	0	0.1237	0.0337	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0	0	0.1574	FALSE	0	0	0	18	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	10	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1125	0.0787	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.1912	FALSE	499	1288	110	792	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	8	15	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.09	0.1687	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.2587	FALSE	462	80	0	856	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	10	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.1125	0.045	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.93	1	0.1575	FALSE	515	4851	409	746	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	10	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1125	0.0225	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.135	FALSE	499	1288	110	792	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	7	10	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.46	1	0.0787	0.1125	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.46	1	0.1912	FALSE	125	705	46	456	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	8	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.09	0.0112	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.1012	FALSE	462	80	0	856	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	6	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0675	FALSE	230	198	14	283	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	LEO1--FAM96A	5	3	LEO1	2875	chr15:52257946:-	FAM96A	21981	chr15:64367736:-	ONLY_REF_SPLICE	YES	152	573	0.05	0.01	0.0562	0.0337	LEO1->LEO1_homolog,_Paf1/RNA_polymerase_II_complex_component,chr15:52230222-52264003:-,FAM96A->chr15:64364758-64386217:-,family_with_sequence_similarity_96_member_A	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.01	0.05	0.0899	FALSE	0	0	0	1	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.045	0.0787	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.1237	FALSE	192	492	57	212	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	FAT1--F11-AS1	3	10	FAT1	8159	chr4:187584453:-	F11-AS1	52293	chr4:187210156:-	ONLY_REF_SPLICE	YES	0	7	1	0.65	0.0337	0.1125	NEIGHBORS[86786],FAT1->ArcherDX_panel,FAT_atypical_cadherin_1,FoundationOne_panel,Oncogene{Bushman},chr4:187508937-187647876:-,F11-AS1->F11_antisense_RNA_1,chr4:187207248-187422151:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.65	1	0.1462	FALSE	0	0	0	1	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	5	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2996	38	0	0.19	0.045	0.0562	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0	0.19	0.1012	FALSE	216	209	16	281	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	5	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3	7	0.75	0.56	0.045	0.0562	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.56	0.75	0.1012	FALSE	209	205	15	279	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	4	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.045	0.0562	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.1012	FALSE	467	2173	244	435	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	GSTP1--JUP	5	0	GSTP1	3571	chr11:67353636:+	JUP	25440	chr17:39777078:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1,JUP->chr17:39775692-39943183:-,junction_plakoglobin	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	8	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.79	1	0.0337	0.09	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.79	1	0.1237	FALSE	499	1288	110	792	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	PABPC1--KRT14	5	0	PABPC1	2002	chr8:101734036:-	KRT14	18384	chr17:39743147:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	GTEx&tcga_normals:1/3694=0.03%,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,KRT14->chr17:39738531-39743173:-,keratin_14	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0562	TRUE	0	0	0	4	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	RP11-499F3.2--TBC1D2B	4	1	RP11-499F3.2	2399	chr15:82090265:-	TBC1D2B	16505	chr15:78310299:-	ONLY_REF_SPLICE	YES	1	31	0.83	0.14	0.045	0.0112	RP11-499F3.2->chr15:81952823-82163466:-,TBC1D2B->TBC1_domain_family_member_2B,chr15:78276378-78370066:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.14	0.83	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0337	0.0562	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.89	1	0.0899	FALSE	407	2205	196	549	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	4	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17536	38	0	0.16	0.0337	0.045	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0	0.16	0.0787	FALSE	231	217	16	283	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	2	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	6	1	0.6	0.0225	0.0787	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.6	1	0.1012	TRUE	458	1351	185	561	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	SAMD12--EXT1	3	2	SAMD12	2373	chr8:119592954:-	EXT1	23526	chr8:118849440:-	ONLY_REF_SPLICE	NO	26	172	0.16	0.03	0.0337	0.0225	NEIGHBORS[77606],SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.03	0.16	0.0562	FALSE	0	4	0	6	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	CDH13--RP11-22H5.2	3	1	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	39	0	0.09	1	0.0337	0.0112	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.0449	FALSE	14	31	0	36	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	1	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	16925	0	0	1	0.0337	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0	1	0.0449	FALSE	231	217	16	283	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	C17orf76-AS1--SEPT9	3	0	C17orf76-AS1	1593	chr17:16342728:+	SEPT9	45890	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	C17orf76-AS1->chr17:16342136-16381992:+,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0337	TRUE	0	3	0	6	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0337	FALSE	231	204	14	283	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-RNR2	3	0	MT-ND4	1824	chrM:11583:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0337	FALSE	13	19	3	21	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0337	FALSE	499	1288	110	792	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	SLC1A5--MT-ND4L	3	0	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0337	FALSE	0	0	0	189	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	TULP4--RP11-732M18.3	3	0	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0337	TRUE	126	140	6	21	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	TXN2--S100A2	3	0	TXN2	5473	chr22:36863872:-	S100A2	14400	chr1:153534046:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	TXN2->chr22:36863083-36878077:-,thioredoxin_2,S100A2->S100_calcium_binding_protein_A2,chr1:153533584-153540366:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	BNIP2--GNB5	2	3	BNIP2	10114	chr15:59961091:-	GNB5	24398	chr15:52446273:-	ONLY_REF_SPLICE	YES	175	74	0.03	0.06	0.0225	0.0337	BNIP2->BCL2/adenovirus_E1B_19kDa_interacting_protein_2,chr15:59951345-59981733:-,GNB5->G_protein_subunit_beta_5,chr15:52413117-52483566:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.03	0.06	0.0562	TRUE	0	0	0	1	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	7	9	0.3	0.25	0.0225	0.0112	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.25	0.3	0.0337	FALSE	25	145	6	90	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	TLN2--LINC00871	2	1	TLN2	26764	chr15:63000995:+	LINC00871	90229	chr14:46970510:+	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0225	0.0112	TLN2->chr15:62682725-63136830:+,talin_2,LINC00871->chr14:46410146-46971026:+,long_intergenic_non-protein_coding_RNA_871	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.27	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	BCL2L13--UBE3A	2	0	BCL2L13	4107	chr22:18138598:+	UBE3A	31518	chr15:25605674:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,UBE3A->Oncogene{Bushman},chr15:25582381-25684128:-,ubiquitin_protein_ligase_E3A	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	BRI3BP--UBC	2	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	5	99	5	34	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	C17orf76-AS1--CYHR1	2	0	C17orf76-AS1	1593	chr17:16342728:+	CYHR1	22066	chr8:145678843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	C17orf76-AS1->chr17:16342136-16381992:+,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	0	0	2	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	C7orf50--MAD1L1	2	0	C7orf50	3078	chr7:1166893:-	MAD1L1	50779	chr7:1938026:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	1	0	6	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	INVS--ERP44	2	0	INVS	5175	chr9:102888831:+	ERP44	38787	chr9:102769971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[216],INVS->chr9:102861538-103063282:+,inversin,ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	LRRC16A--RP11-439H9.1	2	0	LRRC16A	2856	chr6:25285137:+	RP11-439H9.1	46987	chr6:23341963:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LRRC16A->chr6:25279306-25620758:+,leucine_rich_repeat_containing_16A,RP11-439H9.1->chr6:23337939-23346788:+	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	NCOR2--UBC	2	0	NCOR2	11484	chr12:124934361:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	12	15	2	11	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	RCC1--SEPT9	2	0	RCC1	2175	chr1:28834672:+	SEPT9	51565	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	7	0	1	1	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	RP11-114H23.1--RP11-114H23.2	2	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	FALSE	81	155	12	160	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	SAMD12--EIF3H	2	0	SAMD12	2373	chr8:119592954:-	EIF3H	30065	chr8:117671219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hypothalamus=1},SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	1	0	2	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	TBC1D9B--CSNK1G3	2	0	TBC1D9B	8212	chr5:179315103:-	CSNK1G3	33920	chr5:122893189:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TBC1D9B->TBC1_domain_family_member_9B,chr5:179289066-179334859:-,CSNK1G3->casein_kinase_1_gamma_3,chr5:122847793-122952739:+	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	TCF12--UBB	2	0	TCF12	7716	chr15:57384089:+	UBB	44173	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,UBB->chr17:16284112-16286059:+,ubiquitin_B	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	TYMS--GNAS	2	0	TYMS	4286	chr18:662320:+	GNAS	29027	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TYMS->chr18:657604-673578:+,thymidylate_synthetase,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	1	1	0.0225	TRUE	0	2	0	3	0	TRUE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	ARL15--NDUFS4	1	2	ARL15	5950	chr5:53409032:-	NDUFS4	18000	chr5:52942063:+	ONLY_REF_SPLICE	YES	20	260	0.13	0.01	0.0112	0.0225	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.01	0.13	0.0337	FALSE	5	61	2	9	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	1	2	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	19	17	0.14	0.15	0.0112	0.0225	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.14	0.15	0.0337	TRUE	105	90	7	93	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	AC002066.1--AC073130.1	1	1	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.0112	0.0112	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.0224	FALSE	0	1	1	30	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	BTF3L4--UBA5	1	1	BTF3L4	4194	chr1:52530610:+	UBA5	26878	chr3:132394449:+	ONLY_REF_SPLICE	YES	493	101	0	0.02	0.0112	0.0112	BTF3L4->basic_transcription_factor_3-like_4,chr1:52521797-52556388:+,UBA5->chr3:132373290-132396941:+,ubiquitin_like_modifier_activating_enzyme_5	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0	0.02	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	CDH13--RP11-22H5.2	1	1	CDH13	2482	chr16:82671372:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	56	0	0.03	1	0.0112	0.0112	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.03	1	0.0224	FALSE	0	5	0	7	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	IGF2BP2--TRA2B	1	1	IGF2BP2	12660	chr3:185393084:-	TRA2B	30253	chr3:185649640:-	ONLY_REF_SPLICE	YES	268	813	0.01	0	0.0112	0.0112	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MYH9--TXN2	1	1	MYH9	5055	chr22:36737415:-	TXN2	47050	chr22:36872903:-	ONLY_REF_SPLICE	YES	608	292	0	0.01	0.0112	0.0112	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[79020],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,TXN2->chr22:36863083-36878077:-,thioredoxin_2	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	MYL6--RPL30	1	1	MYL6	2462	chr12:56553406:+	RPL30	10407	chr8:99057627:-	ONLY_REF_SPLICE	NO	74	78	0.03	0.03	0.0112	0.0112	GTEx&tcga_normals:2/3694=0.05%,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.03	0.03	0.0224	TRUE	0	0	0	2	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	PPIA--UGGT2	1	1	PPIA	1114	chr7:44836392:+	UGGT2	52799	chr13:96508594:-	ONLY_REF_SPLICE	NO	819	1	0	0.67	0.0112	0.0112	PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A,UGGT2->UDP-glucose_glycoprotein_glucosyltransferase_2,chr13:96453834-96705736:-	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0	0.67	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	PPP1R13B--C14orf2	1	1	PPP1R13B	7277	chr14:104245082:-	C14orf2	34646	chr14:104381526:-	ONLY_REF_SPLICE	YES	61	19	0.03	0.1	0.0112	0.0112	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_REARRANGEMENT:-:[64698],PPP1R13B->chr14:104200089-104313927:-,protein_phosphatase_1_regulatory_subunit_13B,C14orf2->chr14:104378625-104394606:-,chromosome_14_open_reading_frame_2	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.03	0.1	0.0224	TRUE	1	0	0	2	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	PPP2R5A--DTL	1	1	PPP2R5A	4160	chr1:212480242:+	DTL	23573	chr1:212216335:+	ONLY_REF_SPLICE	YES	70	54	0.03	0.04	0.0112	0.0112	PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha,DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.03	0.04	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	SNHG8--BUB3	1	1	SNHG8	1429	chr4:119200292:+	BUB3	12689	chr10:124924563:+	ONLY_REF_SPLICE	YES	94	150	0.02	0.01	0.0112	0.0112	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,BUB3->BUB3,_mitotic_checkpoint_protein,chr10:124913793-124924886:+	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000606
PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	1677	90	0	0.02	0.0112	0.0112	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	PECAPJ34CLONEC12_UPPER_AERODIGESTIVE_TRACT	0	0.02	0.0224	FALSE	6	50	7	115	0	FALSE	ACH-000606
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	118	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3109	0.0333	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	1	1	1.3442	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	PCBP2--CDS2	89	0	PCBP2	21220	chr12:53873447:+	CDS2	47498	chr20:5177872:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9887	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	HUCCT1_BILIARY_TRACT	1	1	0.9887	TRUE	0	802	86	3	772	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	PCBP2--CDS2	81	0	PCBP2	21228	chr12:53873455:+	CDS2	47507	chr20:5177881:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8998	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	HUCCT1_BILIARY_TRACT	1	1	0.8998	TRUE	0	802	86	3	772	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-TA--MT-TC	80	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8887	0.0333	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUCCT1_BILIARY_TRACT	1	1	0.922	FALSE	462	80	0	856	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	SPG11--MRPL52	59	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6554	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	HUCCT1_BILIARY_TRACT	1	1	0.6554	TRUE	38	11	0	19	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	NIPA2--POLA1	45	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4999	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	HUCCT1_BILIARY_TRACT	1	1	0.4999	TRUE	46	1352	75	139	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-TC--MT-TY	44	2	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4888	0.0222	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HUCCT1_BILIARY_TRACT	1	1	0.511	FALSE	51	280	19	36	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	38	22	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.94	1	0.4221	0.2444	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	0.94	1	0.6665	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	PCBP2--CDS2	43	0	PCBP2	21228	chr12:53873455:+	CDS2	47508	chr20:5177882:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4777	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	HUCCT1_BILIARY_TRACT	1	1	0.4777	TRUE	0	802	86	3	772	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	37	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.411	0.0444	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	1	1	0.4554	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-TA--MT-TC	32	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3555	0.0111	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUCCT1_BILIARY_TRACT	1	1	0.3666	FALSE	462	80	0	856	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	22	19	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2444	0.2111	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	1	1	0.4555	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	17	30	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.1889	0.3333	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	0.92	1	0.5222	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	PLXDC1--TAF13	21	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2333	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HUCCT1_BILIARY_TRACT	1	1	0.2333	TRUE	7	10	0	216	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-TA--MT-TC	17	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1889	0.0333	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUCCT1_BILIARY_TRACT	1	1	0.2222	FALSE	462	80	0	856	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	8	29	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.0889	0.3222	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	0.88	1	0.4111	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	PCBP2--CDS2	15	0	PCBP2	21225	chr12:53873452:+	CDS2	47503	chr20:5177877:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1666	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	HUCCT1_BILIARY_TRACT	1	1	0.1666	TRUE	0	802	86	3	772	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	4	28	MT-ND6	1159	chrM:14515:-	MT-TE	4559	chrM:14709:-	INCL_NON_REF_SPLICE	YES	6	0	0.84	1	0.0444	0.3111	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	0.84	1	0.3555	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	3	30	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.0333	0.3333	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	0.89	1	0.3666	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	5	22	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	5	0	0.84	1	0.0555	0.2444	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	0.84	1	0.2999	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	TIMM23--RP11-464F9.1	10	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	237	0	0.05	1	0.1111	0.0222	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HUCCT1_BILIARY_TRACT	0.05	1	0.1333	TRUE	519	3926	326	965	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	10	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1111	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	1	1	0.1111	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	4	23	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0444	0.2555	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	0.93	1	0.2999	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	RP11-96H19.1--RP11-446N19.1	8	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0889	0.0667	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUCCT1_BILIARY_TRACT	1	1	0.1556	FALSE	515	4851	409	746	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	4	15	MT-ND6	1149	chrM:14525:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	5	0	0.79	1	0.0444	0.1666	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	0.79	1	0.211	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	7	1	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0778	0.0111	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	1	1	0.0889	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-TI--MT-ND1	7	1	MT-TI	1010	chrM:4272:+	MT-ND1	4946	chrM:4183:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.8	0.0778	0.0111	LOCAL_REARRANGEMENT:+:[1],MT-TI->chrM:4263-4331:+,mitochondrially_encoded_tRNA_isoleucine,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUCCT1_BILIARY_TRACT	0.8	1	0.0889	FALSE	57	10	0	4	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-TI--MT-ND1	6	4	MT-TI	1004	chrM:4266:+	MT-ND1	4939	chrM:4176:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.83	0.0667	0.0444	LOCAL_REARRANGEMENT:+:[1],MT-TI->chrM:4263-4331:+,mitochondrially_encoded_tRNA_isoleucine,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUCCT1_BILIARY_TRACT	0.83	1	0.1111	FALSE	57	10	0	4	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	1	1	0.0667	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-TA--MT-TC	5	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0.0444	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUCCT1_BILIARY_TRACT	1	1	0.0999	FALSE	462	80	0	856	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-TI--MT-ND1	6	0	MT-TI	1004	chrM:4266:+	MT-ND1	4978	chrM:4215:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0	LOCAL_REARRANGEMENT:+:[1],MT-TI->chrM:4263-4331:+,mitochondrially_encoded_tRNA_isoleucine,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUCCT1_BILIARY_TRACT	1	1	0.0667	FALSE	57	10	0	4	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	PCBP2--CDS2	6	0	PCBP2	21228	chr12:53873455:+	CDS2	47509	chr20:5177883:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	HUCCT1_BILIARY_TRACT	1	1	0.0667	TRUE	0	802	86	3	772	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	RP11-96H19.1--RP11-446N19.1	4	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0444	0.0667	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUCCT1_BILIARY_TRACT	1	1	0.1111	FALSE	467	2173	244	435	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	5	1	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0.0111	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	1	1	0.0666	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-TC--MT-TY	5	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HUCCT1_BILIARY_TRACT	1	1	0.0555	FALSE	51	280	19	36	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-TA--MT-TC	4	3	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0444	0.0333	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUCCT1_BILIARY_TRACT	1	1	0.0777	FALSE	462	80	0	856	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	4	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0444	0.0111	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	1	1	0.0555	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	4	1	MT-ND6	1027	chrM:14647:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0444	0.0111	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	1	1	0.0555	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-TW--MT-ND2	4	1	MT-TW	1005	chrM:5516:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	47	1	0.1	0.0444	0.0111	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUCCT1_BILIARY_TRACT	0.1	1	0.0555	FALSE	14	0	0	19	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-TC--MT-TY	4	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0444	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HUCCT1_BILIARY_TRACT	1	1	0.0444	FALSE	51	280	19	36	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	C15orf57--CBX3	3	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	3	4	0.62	0.56	0.0333	0.0222	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HUCCT1_BILIARY_TRACT	0.56	0.62	0.0555	TRUE	267	562	48	632	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	3	1	MT-ND6	1031	chrM:14643:-	MT-TE	4590	chrM:14678:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0.0111	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	1	1	0.0444	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-ND6--MT-TE	3	1	MT-ND6	1048	chrM:14626:-	MT-TE	4584	chrM:14684:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0.0111	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUCCT1_BILIARY_TRACT	1	1	0.0444	FALSE	499	1288	110	792	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	MT-TW--MT-ND2	3	1	MT-TW	1004	chrM:5515:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	47	1	0.08	0.0333	0.0111	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUCCT1_BILIARY_TRACT	0.08	1	0.0444	FALSE	14	0	0	19	0	FALSE	ACH-000976
HUCCT1_BILIARY_TRACT	PCBP2--CDS2	3	0	PCBP2	21229	chr12:53873456:+	CDS2	47506	chr20:5177880:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	HUCCT1_BILIARY_TRACT	1	1	0.0333	TRUE	0	802	86	3	772	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	NPAS2--SLC9A4	2	1	NPAS2	9724	chr2:101565942:+	SLC9A4	39298	chr2:103119907:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0.0111	NPAS2->chr2:101436614-101613291:+,neuronal_PAS_domain_protein_2,SLC9A4->chr2:103089762-103150431:+,solute_carrier_family_9_member_A4	HUCCT1_BILIARY_TRACT	1	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	ARHGAP18--CDKN3	2	0	ARHGAP18	1202	chr6:130031169:-	CDKN3	28494	chr14:54878202:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	ARHGAP18->Rho_GTPase_activating_protein_18,chr6:129897277-130031370:-,CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3	HUCCT1_BILIARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	TOR1AIP2--ACBD6	2	0	TOR1AIP2	1565	chr1:179846374:-	ACBD6	38405	chr1:180283857:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	TOR1AIP2->chr1:179809102-179846938:-,torsin_1A_interacting_protein_2,ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-	HUCCT1_BILIARY_TRACT	1	1	0.0222	TRUE	0	1	0	1	1	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	NCKAP1--RP11-395N3.2	1	1	NCKAP1	8369	chr2:183859567:-	RP11-395N3.2	55321	chr2:227675628:+	ONLY_REF_SPLICE	YES	3	8	0.4	0.2	0.0111	0.0111	NCKAP1->NCK_associated_protein_1,chr2:183773843-183903586:-,RP11-395N3.2->chr2:227664862-227675745:+	HUCCT1_BILIARY_TRACT	0.2	0.4	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000976
HUCCT1_BILIARY_TRACT	PRKAA1--CCNB1	1	1	PRKAA1	2454	chr5:40777547:-	CCNB1	24266	chr5:68473066:+	ONLY_REF_SPLICE	YES	4	1851	0.33	0	0.0111	0.0111	PRKAA1->chr5:40759481-40798476:-,protein_kinase_AMP-activated_catalytic_subunit_alpha_1,CCNB1->Oncogene{Bushman},chr5:68462837-68474072:+,cyclin_B1	HUCCT1_BILIARY_TRACT	0	0.33	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000976
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	122	73	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.4024	0.8391	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	2.2415	TRUE	508	994	45	981	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARID1A--MAU2	126	9	ARID1A	2508	chr1:27024031:+	MAU2	31135	chr19:19446527:+	ONLY_REF_SPLICE	YES	9	48	0.94	0.74	1.4484	0.1035	ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,MAU2->MAU2_sister_chromatid_cohesion_factor,chr19:19431490-19469563:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	0.94	1.5519	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	73	10	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	587	6	0.12	0.93	0.8391	0.1149	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.93	0.954	TRUE	519	3926	326	965	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	42	37	IGKV2-30	1681	chr2:89544399:-	AC096579.7	9026	chr2:89130914:-	INCL_NON_REF_SPLICE	YES	56	0	0.59	1	0.4828	0.4253	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.9081	TRUE	0	0	0	4	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	29	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3334	0.0345	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3679	FALSE	499	1288	110	792	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	27	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3104	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3104	FALSE	189	492	56	216	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	26	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2989	0.0115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3104	FALSE	499	1288	110	792	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	19	15	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2184	0.1724	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3908	TRUE	13	49	2	38	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	21	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2414	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2414	TRUE	0	0	0	518	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	14	5	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1609	0.0575	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2184	FALSE	46	201	11	112	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXDC1--TAF13	15	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1724	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1724	TRUE	7	10	0	216	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	12	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1379	0.0115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1494	FALSE	499	1288	110	792	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	11	0	ZNF654	1688	chr3:88188941:+	HMGB2	12525	chr4:174253314:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1264	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1264	TRUE	0	0	0	518	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	4	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.092	0.046	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.138	FALSE	499	1288	110	792	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	6	9	RP11-155G15.2	3309	chr5:96772337:+	RP11-1E3.1	9053	chr5:97004255:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0.1035	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1725	FALSE	0	1	0	8	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf53--ZNF431	4	12	C19orf53	1540	chr19:13885521:+	ZNF431	10234	chr19:21349138:+	ONLY_REF_SPLICE	YES	655	51	0.02	0.24	0.046	0.1379	C19orf53->chr19:13884982-13889276:+,chromosome_19_open_reading_frame_53,ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.24	0.1839	TRUE	0	0	0	1	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.069	FALSE	189	492	56	216	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	0	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.069	FALSE	189	492	56	216	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	6	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.069	TRUE	0	0	0	518	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	4	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	7	53	0.53	0.13	0.046	0.046	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.53	0.092	FALSE	189	492	56	216	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	4	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.67	0.046	0.046	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.092	FALSE	189	492	56	216	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	0	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0575	FALSE	189	492	56	216	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	3	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.64	0.046	0.0345	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.0805	FALSE	189	492	56	216	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	1	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0.0115	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0575	FALSE	189	492	56	216	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	1	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	8	0	0.38	1	0.046	0.0115	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.0575	FALSE	189	492	56	216	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	5	MT-CO3	1393	chrM:9599:+	MT-ATP6	5185	chrM:8927:+	INCL_NON_REF_SPLICE	NO	10	61	0.44	0.12	0.0345	0.0575	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.44	0.092	FALSE	189	492	56	216	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	5	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	13	0	0.38	1	0.0345	0.0575	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.092	FALSE	189	492	56	216	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	5	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	21	4	0.28	0.67	0.0345	0.0575	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.67	0.092	FALSE	189	492	56	216	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	1	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	8	0	0.38	1	0.046	0.0115	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.0575	FALSE	189	492	56	216	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	1	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0.0115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0575	FALSE	499	1288	110	792	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	4	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.64	0.0345	0.046	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.0805	FALSE	189	492	56	216	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	4	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0345	0.046	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0805	FALSE	499	1288	110	792	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	4	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0.046	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0805	FALSE	499	1288	110	792	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.046	FALSE	499	1288	110	792	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	3	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.75	0.0345	0.0345	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.069	FALSE	189	492	56	216	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	3	3	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0345	0.0345	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.069	FALSE	141	264	50	91	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0.023	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0575	FALSE	499	1288	110	792	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	12868	28805	0	0	0.0345	0.0115	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.046	FALSE	183	104	9	328	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0345	FALSE	189	492	56	216	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARID1A--MAU2	1	7	ARID1A	2508	chr1:27024031:+	MAU2	32587	chr19:19447979:+	ONLY_REF_SPLICE	YES	9	92	0.47	0.08	0.0115	0.0805	ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,MAU2->MAU2_sister_chromatid_cohesion_factor,chr19:19431490-19469563:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.47	0.092	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf53--ZNF431	1	5	C19orf53	1407	chr19:13885388:+	ZNF431	10234	chr19:21349138:+	ONLY_REF_SPLICE	NO	189	51	0.03	0.11	0.0115	0.0575	C19orf53->chr19:13884982-13889276:+,chromosome_19_open_reading_frame_53,ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.11	0.069	TRUE	0	0	0	1	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--AGAP6	2	1	TIMM23B	6950	chr10:51387763:+	AGAP6	10946	chr10:51749068:+	ONLY_REF_SPLICE	YES	0	66	1	0.04	0.023	0.0115	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,AGAP6->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_6,chr10:51748078-51770259:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0345	TRUE	2	1	1	8	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC007390.5--SAE1	2	0	AC007390.5	5837	chr2:37428869:+	SAE1	27687	chr19:47700490:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	AC007390.5->chr2:37423631-37443336:+,SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK8--U2AF1	2	0	DOCK8	22544	chr9:339099:+	U2AF1	79260	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	DOCK8->chr9:214854-465259:+,dedicator_of_cytokinesis_8,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPATCH8--WWP2	2	0	GPATCH8	2180	chr17:42552197:-	WWP2	51424	chr16:69967873:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GPATCH8->G-patch_domain_containing_8,chr17:42472652-42580798:-,WWP2->WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr16:69796209-69975644:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1143--OBSCN	2	0	KIAA1143	3192	chr3:44794837:-	OBSCN	14660	chr1:228401142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	KIAA1143->KIAA1143,chr3:44779153-44803154:-,OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLHL42--VPS37A	2	0	KLHL42	4951	chr12:27944834:+	VPS37A	17971	chr8:17123416:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	KLHL42->chr12:27932953-27955973:+,kelch_like_family_member_42,VPS37A->VPS37A,_ESCRT-I_subunit,chr8:17104080-17159936:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTERFD1--PTDSS1	2	0	MTERFD1	1110	chr8:97273729:-	PTDSS1	24438	chr8:97332474:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	LOCAL_INVERSION:-:+:[105],MTERFD1->chr8:97251626-97273838:-,PTDSS1->chr8:97273943-97349223:+,phosphatidylserine_synthase_1	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTO1--C6orf57	2	0	MTO1	9282	chr6:74191967:+	C6orf57	27509	chr6:71289117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	MTO1->chr6:74171301-74218959:+,mitochondrial_tRNA_translation_optimization_1,C6orf57->chr6:71276620-71299272:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NKTR--ATP1B3	2	0	NKTR	15451	chr3:42674315:+	ATP1B3	41549	chr3:141644373:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	NKTR->chr3:42642106-42690227:+,natural_killer_cell_triggering_receptor,ATP1B3->ATPase_Na+/K+_transporting_subunit_beta_3,chr3:141594966-141645356:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PALB2--COG7	2	0	PALB2	11829	chr16:23634290:-	COG7	32136	chr16:23417583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	PALB2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:23614488-23652631:-,partner_and_localizer_of_BRCA2,COG7->chr16:23399814-23464501:-,component_of_oligomeric_golgi_complex_7	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4D--NDUFAF2	2	0	PDE4D	1070	chr5:59817878:-	NDUFAF2	60965	chr5:60368952:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	2	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	1	4	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0115	0.046	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0575	FALSE	49	120	16	70	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL5--ATP1A1	2	0	RPL5	2636	chr1:93299217:+	ATP1A1	26540	chr1:116939220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5,ATP1A1->ATPase_Na+/K+_transporting_subunit_alpha_1,chr1:116915290-116952883:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD5--FAM172A	2	0	SMAD5	1118	chr5:135468651:+	FAM172A	25188	chr5:93388932:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	SMAD5->SMAD_family_member_5,chr5:135468534-135524435:+,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBB--MARCH8	2	0	TUBB	1363	chr6:30688340:+	MARCH8	13971	chr10:46028737:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I,MARCH8->chr10:45950035-46090354:-,membrane_associated_ring-CH-type_finger_8	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001432.14--TTC3	1	2	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	10	198	0.23	0.01	0.0115	0.023	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.23	0.0345	FALSE	0	0	0	15	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYRM4--F13A1	1	2	LYRM4	1292	chr6:5260881:-	F13A1	34546	chr6:6197559:-	ONLY_REF_SPLICE	YES	161	99	0.02	0.03	0.0115	0.023	LYRM4->LYR_motif_containing_4,chr6:5102827-5261172:-,F13A1->chr6:6144318-6321246:-,coagulation_factor_XIII_A_chain	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0345	TRUE	0	0	0	1	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--C7orf73	1	1	CPSF6	11046	chr12:69656342:+	C7orf73	20993	chr7:135357501:+	ONLY_REF_SPLICE	YES	304	154	0.01	0.01	0.0115	0.0115	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C7orf73->chr7:135347244-135378166:+,chromosome_7_open_reading_frame_73	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS6-AS1--TFDP1	1	1	GAS6-AS1	1062	chr13:114518664:+	TFDP1	11094	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	168	1	0.01	0.0115	0.0115	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.023	FALSE	0	0	0	4	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLAIN2--OCIAD2	1	1	SLAIN2	9676	chr4:48396670:+	OCIAD2	26759	chr4:48887582:-	ONLY_REF_SPLICE	YES	181	206	0.01	0.01	0.0115	0.0115	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},SLAIN2->SLAIN_motif_family_member_2,chr4:48343339-48428229:+,OCIAD2->OCIA_domain_containing_2,chr4:48887036-48908954:-	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPRED2--ACTR2	1	1	SPRED2	1676	chr2:65659096:-	ACTR2	25444	chr2:65488381:+	ONLY_REF_SPLICE	YES	48	1003	0.04	0	0.0115	0.0115	{Klijn_CCL:Lymphoid=1},LOCAL_INVERSION:-:+:[39598],SPRED2->chr2:65537985-65659771:-,sprouty_related_EVH1_domain_containing_2,ACTR2->ARP2_actin-related_protein_2_homolog_(yeast),chr2:65454887-65498387:+	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TANK--PSMD14	1	1	TANK	1156	chr2:161993574:+	PSMD14	27441	chr2:162223989:+	ONLY_REF_SPLICE	YES	176	393	0.01	0.01	0.0115	0.0115	NEIGHBORS[71817],TANK->TRAF_family_member_associated_NFKB_activator,chr2:161993419-162092732:+,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000334
DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF83--PANK2	1	1	ZNF83	4336	chr19:53158814:-	PANK2	29546	chr20:3899318:+	ONLY_REF_SPLICE	YES	72	97	0.03	0.02	0.0115	0.0115	ZNF83->chr19:53097313-53193749:-,zinc_finger_protein_83,PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2	DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000334
NCIH2887_LUNG	ZNF823--RP11-178C3.1	654	154	ZNF823	1193	chr19:11849632:-	RP11-178C3.1	11406	chr17:58043764:+	ONLY_REF_SPLICE	YES	8	0	0.99	1	7.3199	1.7236	ZNF823->chr19:11832080-11849824:-,zinc_finger_protein_823,RP11-178C3.1->chr17:58018269-58050462:+	NCIH2887_LUNG	0.99	1	9.0435	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	TIMM23B--LINC00843	88	44	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9849	0.4925	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2887_LUNG	0.99	1	1.4774	TRUE	508	994	45	981	0	FALSE	ACH-000251
NCIH2887_LUNG	KANSL1--ARL17B	45	49	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	16	88	0.85	0.52	0.5037	0.5484	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH2887_LUNG	0.52	0.85	1.0521	TRUE	181	1564	124	196	0	FALSE	ACH-000251
NCIH2887_LUNG	LIN9--PARP1	46	40	LIN9	11731	chr1:226453234:-	PARP1	21584	chr1:226590080:-	ONLY_REF_SPLICE	YES	50	312	0.63	0.22	0.5149	0.4477	LOCAL_REARRANGEMENT:-:[50822],LIN9->chr1:226418850-226497570:-,lin-9_DREAM_MuvB_core_complex_component,PARP1->chr1:226548392-226595780:-,poly(ADP-ribose)_polymerase_1	NCIH2887_LUNG	0.22	0.63	0.9626	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	TIMM23--RP11-464F9.1	54	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	570	3	0.1	0.95	0.6044	0.0783	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2887_LUNG	0.1	0.95	0.6827	TRUE	519	3926	326	965	0	FALSE	ACH-000251
NCIH2887_LUNG	GAS6-AS1--TMCO3	55	1	GAS6-AS1	1062	chr13:114518664:+	TMCO3	19812	chr13:114193672:+	ONLY_REF_SPLICE	YES	0	126	1	0.31	0.6156	0.0112	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	NCIH2887_LUNG	0.31	1	0.6268	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	MT-ND5--MT-ATP8	45	21	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	9	0	0.88	1	0.5037	0.235	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2887_LUNG	0.88	1	0.7387	FALSE	43	37	8	105	0	FALSE	ACH-000251
NCIH2887_LUNG	MT-TA--MT-TC	46	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5149	0.0224	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2887_LUNG	1	1	0.5373	FALSE	462	80	0	856	0	FALSE	ACH-000251
NCIH2887_LUNG	ZNF823--RP11-178C3.1	18	101	ZNF823	1193	chr19:11849632:-	RP11-178C3.1	12471	chr17:58050196:+	ONLY_REF_SPLICE	YES	8	4	0.94	0.97	0.2015	1.1304	ZNF823->chr19:11832080-11849824:-,zinc_finger_protein_823,RP11-178C3.1->chr17:58018269-58050462:+	NCIH2887_LUNG	0.94	0.97	1.3319	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	NPY1R--LINC01060	40	12	NPY1R	3065	chr4:164253634:-	LINC01060	15758	chr4:189397852:+	ONLY_REF_SPLICE	YES	1	82	0.98	0.39	0.4477	0.1343	NPY1R->Oncogene{Bushman},chr4:164245113-164265984:-,neuropeptide_Y_receptor_Y1,LINC01060->chr4:189321890-189602205:+,long_intergenic_non-protein_coding_RNA_1060	NCIH2887_LUNG	0.39	0.98	0.582	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	ZNF654--HMGB2	40	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4477	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2887_LUNG	1	1	0.4477	TRUE	0	0	0	518	0	FALSE	ACH-000251
NCIH2887_LUNG	ESCO1--RP11-527H14.2	33	9	ESCO1	1262	chr18:19180584:-	RP11-527H14.2	23159	chr18:14962069:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3694	0.1007	ESCO1->chr18:19109242-19180845:-,establishment_of_sister_chromatid_cohesion_N-acetyltransferase_1,RP11-527H14.2->chr18:14946266-14973769:+	NCIH2887_LUNG	1	1	0.4701	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	TRAF4--AFF3	31	16	TRAF4	1272	chr17:27071273:+	AFF3	23303	chr2:100453986:-	ONLY_REF_SPLICE	YES	54	0	0.47	1	0.347	0.1791	TRAF4->Oncogene{Bushman},TNF_receptor_associated_factor_4,chr17:27071002-27077974:+,AFF3->AF4/FMR2_family_member_3,Oncogene{Bushman},chr2:100162323-100759201:-	NCIH2887_LUNG	0.47	1	0.5261	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	ESCO1--RP11-527H14.2	30	5	ESCO1	1262	chr18:19180584:-	RP11-527H14.2	26421	chr18:14972350:+	INCL_NON_REF_SPLICE	YES	0	22	1	0.61	0.3358	0.056	ESCO1->chr18:19109242-19180845:-,establishment_of_sister_chromatid_cohesion_N-acetyltransferase_1,RP11-527H14.2->chr18:14946266-14973769:+	NCIH2887_LUNG	0.61	1	0.3918	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	MT-ND5--MT-ATP8	28	7	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5281	19	0.01	0.65	0.3134	0.0783	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2887_LUNG	0.01	0.65	0.3917	FALSE	43	37	8	105	0	FALSE	ACH-000251
NCIH2887_LUNG	NPY1R--LINC01060	23	7	NPY1R	3065	chr4:164253634:-	LINC01060	17973	chr4:189406933:+	ONLY_REF_SPLICE	YES	1	44	0.97	0.41	0.2574	0.0783	NPY1R->Oncogene{Bushman},chr4:164245113-164265984:-,neuropeptide_Y_receptor_Y1,LINC01060->chr4:189321890-189602205:+,long_intergenic_non-protein_coding_RNA_1060	NCIH2887_LUNG	0.41	0.97	0.3357	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	RP11-6N13.1--CTD-2374C24.1	18	17	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2015	0.1903	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH2887_LUNG	0.97	1	0.3918	TRUE	5	4	0	46	0	FALSE	ACH-000251
NCIH2887_LUNG	MT-ND5--MT-ATP8	17	5	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7656	106	0	0.17	0.1903	0.056	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2887_LUNG	0	0.17	0.2463	FALSE	43	37	8	105	0	FALSE	ACH-000251
NCIH2887_LUNG	RAPGEF1--NACC2	15	5	RAPGEF1	22777	chr9:134465273:-	NACC2	39289	chr9:138908275:-	ONLY_REF_SPLICE	YES	162	45	0.11	0.31	0.1679	0.056	RAPGEF1->Oncogene{Bushman},Rap_guanine_nucleotide_exchange_factor_1,chr9:134452157-134615461:-,NACC2->NACC_family_member_2,chr9:138898383-138987131:-	NCIH2887_LUNG	0.11	0.31	0.2239	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	LIN9--PARP1	10	20	LIN9	11051	chr1:226453914:-	PARP1	21584	chr1:226590080:-	ONLY_REF_SPLICE	YES	45	312	0.4	0.09	0.1119	0.2238	LOCAL_REARRANGEMENT:-:[50822],LIN9->chr1:226418850-226497570:-,lin-9_DREAM_MuvB_core_complex_component,PARP1->chr1:226548392-226595780:-,poly(ADP-ribose)_polymerase_1	NCIH2887_LUNG	0.09	0.4	0.3357	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	LAMA5--GATA5	12	9	LAMA5	30525	chr20:60893510:-	GATA5	47173	chr20:61041607:-	ONLY_REF_SPLICE	YES	220	0	0.09	1	0.1343	0.1007	LOCAL_REARRANGEMENT:-:[96185],LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5,GATA5->GATA_binding_protein_5,chr20:61038553-61051026:-	NCIH2887_LUNG	0.09	1	0.235	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	RAPGEF1--NACC2	13	1	RAPGEF1	20599	chr9:134471685:-	NACC2	39289	chr9:138908275:-	ONLY_REF_SPLICE	YES	83	45	0.14	0.24	0.1455	0.0112	RAPGEF1->Oncogene{Bushman},Rap_guanine_nucleotide_exchange_factor_1,chr9:134452157-134615461:-,NACC2->NACC_family_member_2,chr9:138898383-138987131:-	NCIH2887_LUNG	0.14	0.24	0.1567	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	MT-CO1--ACTN4	6	27	MT-CO1	1642	chrM:6545:+	ACTN4	20180	chr19:39214932:+	INCL_NON_REF_SPLICE	YES	34369	8724	0	0	0.0672	0.3022	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+	NCIH2887_LUNG	0	0	0.3694	FALSE	0	0	0	1	0	FALSE	ACH-000251
NCIH2887_LUNG	XKR9--CASC11	11	5	XKR9	8344	chr8:71619388:+	CASC11	16533	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	95	0	0.14	1	0.1231	0.056	XKR9->XK_related_9,chr8:71581600-71702606:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NCIH2887_LUNG	0.14	1	0.1791	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	RP11-96H19.1--RP11-446N19.1	9	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.84	1	0.1007	0.1343	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2887_LUNG	0.84	1	0.235	FALSE	407	2205	196	549	0	FALSE	ACH-000251
NCIH2887_LUNG	ACTN4--MT-CO1	7	17	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	8839	34120	0	0	0.0783	0.1903	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2887_LUNG	0	0	0.2686	FALSE	0	0	0	30	0	FALSE	ACH-000251
NCIH2887_LUNG	NPM1P24--SET	11	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	NO	85	1812	0.12	0.01	0.1231	0.0112	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2887_LUNG	0.01	0.12	0.1343	FALSE	0	0	0	434	0	FALSE	ACH-000251
NCIH2887_LUNG	MT-ND5--MT-ATP8	4	26	MT-ND5	2835	chrM:14171:+	MT-ATP8	5865	chrM:8418:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	0.291	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2887_LUNG	1	1	0.3358	FALSE	43	37	8	105	0	FALSE	ACH-000251
NCIH2887_LUNG	ACTN4--MT-CO1	6	17	ACTN4	15641	chr19:39214935:+	MT-CO1	26365	chrM:6550:+	INCL_NON_REF_SPLICE	YES	8410	35119	0	0	0.0672	0.1903	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2887_LUNG	0	0	0.2575	FALSE	0	0	0	30	0	FALSE	ACH-000251
NCIH2887_LUNG	FTH1--ACTG1	10	1	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	385	3	0.03	0.79	0.1119	0.0112	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH2887_LUNG	0.03	0.79	0.1231	TRUE	0	0	0	64	0	FALSE	ACH-000251
NCIH2887_LUNG	MT-ND5--MT-ATP8	4	25	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	0.2798	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2887_LUNG	1	1	0.3246	FALSE	43	37	8	105	0	FALSE	ACH-000251
NCIH2887_LUNG	MT-TA--MT-TC	10	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1119	0.0112	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2887_LUNG	1	1	0.1231	FALSE	462	80	0	856	0	FALSE	ACH-000251
NCIH2887_LUNG	RP11-96H19.1--RP11-446N19.1	8	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	0	0.81	1	0.0895	0.1007	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2887_LUNG	0.81	1	0.1902	FALSE	515	4851	409	746	0	FALSE	ACH-000251
NCIH2887_LUNG	ESCO1--RP11-527H14.2	8	8	ESCO1	1262	chr18:19180584:-	RP11-527H14.2	24373	chr18:14965616:+	ONLY_REF_SPLICE	YES	0	20	1	0.44	0.0895	0.0895	ESCO1->chr18:19109242-19180845:-,establishment_of_sister_chromatid_cohesion_N-acetyltransferase_1,RP11-527H14.2->chr18:14946266-14973769:+	NCIH2887_LUNG	0.44	1	0.179	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	FTH1--ACTG1	9	1	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	384	3	0.03	0.77	0.1007	0.0112	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH2887_LUNG	0.03	0.77	0.1119	TRUE	0	0	0	64	0	FALSE	ACH-000251
NCIH2887_LUNG	CALM3--MT-ND4L	7	8	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1022	0	0.01	1	0.0783	0.0895	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2887_LUNG	0.01	1	0.1678	FALSE	1	1	0	107	0	FALSE	ACH-000251
NCIH2887_LUNG	ESCO1--RP11-527H14.2	7	5	ESCO1	1262	chr18:19180584:-	RP11-527H14.2	26426	chr18:14972355:+	ONLY_REF_SPLICE	YES	0	21	1	0.36	0.0783	0.056	ESCO1->chr18:19109242-19180845:-,establishment_of_sister_chromatid_cohesion_N-acetyltransferase_1,RP11-527H14.2->chr18:14946266-14973769:+	NCIH2887_LUNG	0.36	1	0.1343	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	MT-ND5--MT-ATP8	3	19	MT-ND5	2613	chrM:13949:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	3600	0	0.01	1	0.0336	0.2127	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2887_LUNG	0.01	1	0.2463	FALSE	43	37	8	105	0	FALSE	ACH-000251
NCIH2887_LUNG	MT-ND5--MT-ATP8	4	15	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	3728	1	0.01	0.95	0.0448	0.1679	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2887_LUNG	0.01	0.95	0.2127	FALSE	43	37	8	105	0	FALSE	ACH-000251
NCIH2887_LUNG	RAPGEF1--RP11-885N19.6	7	3	RAPGEF1	24927	chr9:134463123:-	RP11-885N19.6	36122	chr9:141090732:-	ONLY_REF_SPLICE	YES	48	1	0.17	0.91	0.0783	0.0336	RAPGEF1->Oncogene{Bushman},Rap_guanine_nucleotide_exchange_factor_1,chr9:134452157-134615461:-,RP11-885N19.6->chr9:141090383-141093775:-	NCIH2887_LUNG	0.17	0.91	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	SLC1A5--MT-ND4L	7	3	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	585	0	0.02	1	0.0783	0.0336	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2887_LUNG	0.02	1	0.1119	FALSE	0	0	0	189	0	FALSE	ACH-000251
NCIH2887_LUNG	MT-ND5--MT-ATP8	4	14	MT-ND5	2712	chrM:14048:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	YES	24	9	0.43	0.67	0.0448	0.1567	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2887_LUNG	0.43	0.67	0.2015	FALSE	43	37	8	105	0	FALSE	ACH-000251
NCIH2887_LUNG	NPY1R--LINC01060	4	14	NPY1R	3065	chr4:164253634:-	LINC01060	14659	chr4:189377818:+	ONLY_REF_SPLICE	YES	1	35	0.95	0.34	0.0448	0.1567	NPY1R->Oncogene{Bushman},chr4:164245113-164265984:-,neuropeptide_Y_receptor_Y1,LINC01060->chr4:189321890-189602205:+,long_intergenic_non-protein_coding_RNA_1060	NCIH2887_LUNG	0.34	0.95	0.2015	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	RP11-6N13.1--CTD-2374C24.1	4	14	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.0448	0.1567	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH2887_LUNG	0.95	1	0.2015	TRUE	5	12	0	42	0	FALSE	ACH-000251
NCIH2887_LUNG	ACTN4--MT-CO1	3	17	ACTN4	15629	chr19:39214923:+	MT-CO1	26353	chrM:6538:+	INCL_NON_REF_SPLICE	YES	8920	33730	0	0	0.0336	0.1903	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2887_LUNG	0	0	0.2239	FALSE	0	0	0	30	0	FALSE	ACH-000251
NCIH2887_LUNG	MT-ND5--MT-ATP8	7	0	MT-ND5	1076	chrM:12412:+	MT-ATP8	5871	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0783	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2887_LUNG	1	1	0.0783	FALSE	34	25	3	77	0	FALSE	ACH-000251
NCIH2887_LUNG	C15orf57--CBX3	6	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	178	94	0.04	0.08	0.0672	0.0224	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2887_LUNG	0.04	0.08	0.0896	TRUE	267	562	48	632	0	FALSE	ACH-000251
NCIH2887_LUNG	FHIT--ATXN7	5	5	FHIT	6726	chr3:61027719:-	ATXN7	40134	chr3:63981181:+	ONLY_REF_SPLICE	YES	6	23	0.62	0.3	0.056	0.056	FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad,ATXN7->ataxin_7,chr3:63850233-63989138:+	NCIH2887_LUNG	0.3	0.62	0.112	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	GAS6-AS1--TMCO3	6	1	GAS6-AS1	1062	chr13:114518664:+	TMCO3	23260	chr13:114202618:+	ONLY_REF_SPLICE	YES	0	182	1	0.04	0.0672	0.0112	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	NCIH2887_LUNG	0.04	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	MT-ND5--MT-ATP8	4	9	MT-ND5	2356	chrM:13692:+	MT-ATP8	5933	chrM:8486:+	INCL_NON_REF_SPLICE	YES	3730	921	0	0.01	0.0448	0.1007	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2887_LUNG	0	0.01	0.1455	FALSE	43	37	8	105	0	FALSE	ACH-000251
NCIH2887_LUNG	MT-ND5--MT-ATP8	3	12	MT-ND5	2288	chrM:13624:+	MT-ATP8	5816	chrM:8369:+	INCL_NON_REF_SPLICE	YES	3995	0	0	1	0.0336	0.1343	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2887_LUNG	0	1	0.1679	FALSE	43	37	8	105	0	FALSE	ACH-000251
NCIH2887_LUNG	NANP--ENTPD6	5	4	NANP	1317	chr20:25604495:-	ENTPD6	14452	chr20:25193899:+	ONLY_REF_SPLICE	YES	23	264	0.28	0.03	0.056	0.0448	NANP->N-acetylneuraminic_acid_phosphatase,chr20:25593571-25604811:-,ENTPD6->chr20:25176329-25207365:+,ectonucleoside_triphosphate_diphosphohydrolase_6_(putative)	NCIH2887_LUNG	0.03	0.28	0.1008	TRUE	0	0	0	1	0	FALSE	ACH-000251
NCIH2887_LUNG	RPSAP52--HMGA2	5	4	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	10	511	0.47	0.02	0.056	0.0448	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	NCIH2887_LUNG	0.02	0.47	0.1008	FALSE	0	59	0	125	0	FALSE	ACH-000251
NCIH2887_LUNG	IGFBP4--NPM1	5	2	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	1559	3	0	0.7	0.056	0.0224	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	NCIH2887_LUNG	0	0.7	0.0784	FALSE	0	0	0	38	0	FALSE	ACH-000251
NCIH2887_LUNG	RP5-857K21.7--MTND2P28	5	1	RP5-857K21.7	1231	chr1:568367:+	MTND2P28	4713	chr1:565050:+	INCL_NON_REF_SPLICE	YES	130	0	0.04	1	0.056	0.0112	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	NCIH2887_LUNG	0.04	1	0.0672	TRUE	1	0	0	3	0	TRUE	ACH-000251
NCIH2887_LUNG	RP5-857K21.7--MTND2P28	5	1	RP5-857K21.7	1216	chr1:568352:+	MTND2P28	4713	chr1:565050:+	INCL_NON_REF_SPLICE	YES	57	0	0.1	1	0.056	0.0112	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	NCIH2887_LUNG	0.1	1	0.0672	TRUE	1	0	0	3	0	TRUE	ACH-000251
NCIH2887_LUNG	KANSL1--ARL17B	1	16	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	28	88	0.38	0.16	0.0112	0.1791	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH2887_LUNG	0.16	0.38	0.1903	TRUE	105	90	7	93	0	FALSE	ACH-000251
NCIH2887_LUNG	MT-TA--MT-TC	4	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	0.0448	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2887_LUNG	1	1	0.0896	FALSE	462	80	0	856	0	FALSE	ACH-000251
NCIH2887_LUNG	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.056	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2887_LUNG	1	1	0.056	FALSE	292	1546	117	613	0	FALSE	ACH-000251
NCIH2887_LUNG	XXbac-BPG252P9.9--TUBBP2	5	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH2887_LUNG	1	1	0.056	TRUE	0	1	0	48	1	FALSE	ACH-000251
NCIH2887_LUNG	CAPNS1--MT-ND4L	4	3	CAPNS1	8072	chr19:36641057:+	MT-ND4L	11271	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1717	0	0	1	0.0448	0.0336	CAPNS1->calpain_small_subunit_1,chr19:36630477-36641255:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2887_LUNG	0	1	0.0784	FALSE	0	19	0	1	0	FALSE	ACH-000251
NCIH2887_LUNG	MT-ND5--MT-ATP8	3	7	MT-ND5	2167	chrM:13503:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	6334	0	0	1	0.0336	0.0783	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2887_LUNG	0	1	0.1119	FALSE	43	37	8	105	0	FALSE	ACH-000251
NCIH2887_LUNG	IGFBP4--NPM1	4	2	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	1612	4	0	0.6	0.0448	0.0224	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	NCIH2887_LUNG	0	0.6	0.0672	FALSE	0	0	0	38	0	FALSE	ACH-000251
NCIH2887_LUNG	PDGFC--EMCN	3	5	PDGFC	1609	chr4:157891938:-	EMCN	31805	chr4:101401196:-	ONLY_REF_SPLICE	YES	28	0	0.22	1	0.0336	0.056	PDGFC->chr4:157681606-157892546:-,platelet_derived_growth_factor_C,EMCN->chr4:101316498-101801283:-,endomucin	NCIH2887_LUNG	0.22	1	0.0896	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	RP11-6N13.1--CTD-2374C24.1	1	13	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	NO	1	1	0.93	0.93	0.0112	0.1455	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH2887_LUNG	0.93	0.93	0.1567	TRUE	1	1	0	17	1	FALSE	ACH-000251
NCIH2887_LUNG	PRSS23--PICALM	4	0	PRSS23	8412	chr11:86534635:+	PICALM	25674	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0448	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},PRSS23->chr11:86502101-86663952:+,protease,_serine_23,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	NCIH2887_LUNG	1	1	0.0448	TRUE	0	3	0	5	0	TRUE	ACH-000251
NCIH2887_LUNG	MT-ND5--MT-ATP8	3	3	MT-ND5	2329	chrM:13665:+	MT-ATP8	5977	chrM:8530:+	INCL_NON_REF_SPLICE	YES	3802	2062	0	0	0.0336	0.0336	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2887_LUNG	0	0	0.0672	FALSE	43	37	8	105	0	FALSE	ACH-000251
NCIH2887_LUNG	F11-AS1--MAML3	3	2	F11-AS1	1153	chr4:187421999:-	MAML3	16642	chr4:140812121:-	ONLY_REF_SPLICE	YES	28	8	0.15	0.38	0.0336	0.0224	F11-AS1->F11_antisense_RNA_1,chr4:187207248-187422151:-,MAML3->chr4:140637907-141075338:-,mastermind_like_transcriptional_coactivator_3	NCIH2887_LUNG	0.15	0.38	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	TRAF4--AFF3	1	10	TRAF4	1272	chr17:27071273:+	AFF3	24351	chr2:100368763:-	ONLY_REF_SPLICE	YES	54	0	0.17	1	0.0112	0.1119	TRAF4->Oncogene{Bushman},TNF_receptor_associated_factor_4,chr17:27071002-27077974:+,AFF3->AF4/FMR2_family_member_3,Oncogene{Bushman},chr2:100162323-100759201:-	NCIH2887_LUNG	0.17	1	0.1231	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	XXbac-BPG252P9.9--TUBBP2	3	2	XXbac-BPG252P9.9	1385	chr6:30691270:-	TUBBP2	4818	chr13:41959275:-	INCL_NON_REF_SPLICE	YES	1631	0	0	1	0.0336	0.0224	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH2887_LUNG	0	1	0.056	FALSE	0	1	0	48	1	FALSE	ACH-000251
NCIH2887_LUNG	ESCO1--RP11-527H14.2	2	5	ESCO1	1262	chr18:19180584:-	RP11-527H14.2	26448	chr18:14972377:+	ONLY_REF_SPLICE	YES	0	21	1	0.25	0.0224	0.056	ESCO1->chr18:19109242-19180845:-,establishment_of_sister_chromatid_cohesion_N-acetyltransferase_1,RP11-527H14.2->chr18:14946266-14973769:+	NCIH2887_LUNG	0.25	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	GAS6-AS1--TMCO3	3	1	GAS6-AS1	1062	chr13:114518664:+	TMCO3	22257	chr13:114201615:+	ONLY_REF_SPLICE	YES	0	202	1	0.02	0.0336	0.0112	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	NCIH2887_LUNG	0.02	1	0.0448	TRUE	0	0	0	2	0	FALSE	ACH-000251
NCIH2887_LUNG	MT-ND5--MT-ATP8	3	1	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	8276	9	0	0.31	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2887_LUNG	0	0.31	0.0448	FALSE	41	30	6	102	0	FALSE	ACH-000251
NCIH2887_LUNG	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2887_LUNG	1	1	0.0336	FALSE	462	80	0	856	0	FALSE	ACH-000251
NCIH2887_LUNG	VIM--TGFB1	3	0	VIM	2132	chr10:17271389:+	TGFB1	12729	chr19:41859292:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	GTEx&tcga_normals:2/3694=0.05%,VIM->chr10:17270258-17279592:+,vimentin,TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1	NCIH2887_LUNG	1	1	0.0336	TRUE	0	0	0	2	0	TRUE	ACH-000251
NCIH2887_LUNG	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1184	chr6:30691471:-	TUBBP2	4919	chr13:41959174:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH2887_LUNG	1	1	0.0336	TRUE	0	1	0	48	1	FALSE	ACH-000251
NCIH2887_LUNG	MAML3--RP11-205M3.3	2	2	MAML3	2325	chr4:141074014:-	RP11-205M3.3	16704	chr4:170863994:-	ONLY_REF_SPLICE	YES	9	0	0.31	1	0.0224	0.0224	MAML3->chr4:140637907-141075338:-,mastermind_like_transcriptional_coactivator_3,RP11-205M3.3->chr4:170838912-170897053:-	NCIH2887_LUNG	0.31	1	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	NANP--ENTPD6	2	2	NANP	1317	chr20:25604495:-	ENTPD6	15596	chr20:25195503:+	ONLY_REF_SPLICE	YES	23	239	0.15	0.02	0.0224	0.0224	NANP->N-acetylneuraminic_acid_phosphatase,chr20:25593571-25604811:-,ENTPD6->chr20:25176329-25207365:+,ectonucleoside_triphosphate_diphosphohydrolase_6_(putative)	NCIH2887_LUNG	0.02	0.15	0.0448	TRUE	0	0	0	1	0	FALSE	ACH-000251
NCIH2887_LUNG	NDUFA4--PHF14	2	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	1548	121	0	0.02	0.0224	0.0112	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH2887_LUNG	0	0.02	0.0336	FALSE	19	32	3	60	0	FALSE	ACH-000251
NCIH2887_LUNG	NRIP1--AF127936.7	1	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	7	0	0.46	1	0.0112	0.056	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2887_LUNG	0.46	1	0.0672	FALSE	164	806	69	479	0	FALSE	ACH-000251
NCIH2887_LUNG	ITGB4--B3GNTL1	2	0	ITGB4	5617	chr17:73725517:+	B3GNTL1	32466	chr17:81006661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4,B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-	NCIH2887_LUNG	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	LARP1--FAM156A	2	0	LARP1	2848	chr5:154135753:+	FAM156A	34243	chrX:52985544:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+,FAM156A->chrX:52976462-53024651:-,family_with_sequence_similarity_156_member_A	NCIH2887_LUNG	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	SREK1--ERBB2IP	2	0	SREK1	2361	chr5:65440365:+	ERBB2IP	35881	chr5:65307877:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	GTEx_v2:{count=1;pct=0.01%;dist=Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[57422],SREK1->chr5:65435799-65479443:+,splicing_regulatory_glutamic_acid/lysine-rich_protein_1,ERBB2IP->chr5:65222303-65378377:+	NCIH2887_LUNG	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	F11-AS1--MAML3	1	3	F11-AS1	5782	chr4:187347391:-	MAML3	16642	chr4:140812121:-	ONLY_REF_SPLICE	NO	4	8	0.5	0.33	0.0112	0.0336	F11-AS1->F11_antisense_RNA_1,chr4:187207248-187422151:-,MAML3->chr4:140637907-141075338:-,mastermind_like_transcriptional_coactivator_3	NCIH2887_LUNG	0.33	0.5	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	PDGFC--EMCN	1	2	PDGFC	1609	chr4:157891938:-	EMCN	32928	chr4:101396266:-	ONLY_REF_SPLICE	YES	28	2	0.1	0.6	0.0112	0.0224	PDGFC->chr4:157681606-157892546:-,platelet_derived_growth_factor_C,EMCN->chr4:101316498-101801283:-,endomucin	NCIH2887_LUNG	0.1	0.6	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	AC002066.1--AC073130.1	1	1	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	9	0	0.18	1	0.0112	0.0112	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	NCIH2887_LUNG	0.18	1	0.0224	FALSE	0	1	1	30	0	FALSE	ACH-000251
NCIH2887_LUNG	AKAP13--PDE8A	1	1	AKAP13	1228	chr15:85924029:+	PDE8A	90049	chr15:85679765:+	ONLY_REF_SPLICE	NO	18	103	0.1	0.02	0.0112	0.0112	{Klijn_CCL:Breast=1},AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	NCIH2887_LUNG	0.02	0.1	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000251
NCIH2887_LUNG	C19orf52--SNX14	1	1	C19orf52	1184	chr19:11039592:+	SNX14	33475	chr6:86227766:-	ONLY_REF_SPLICE	YES	0	399	1	0	0.0112	0.0112	C19orf52->chr19:11039409-11044211:+,chromosome_19_open_reading_frame_52,SNX14->chr6:86215214-86303874:-,sorting_nexin_14	NCIH2887_LUNG	0	1	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000251
NCIH2887_LUNG	C7orf50--MAD1L1	1	1	C7orf50	6340	chr7:1067894:-	MAD1L1	42333	chr7:2108973:-	ONLY_REF_SPLICE	YES	576	114	0	0.02	0.0112	0.0112	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	NCIH2887_LUNG	0	0.02	0.0224	FALSE	0	0	0	3	0	FALSE	ACH-000251
NCIH2887_LUNG	CLTC--DHX40	1	1	CLTC	25703	chr17:57761346:+	DHX40	55833	chr17:57684394:+	ONLY_REF_SPLICE	YES	1064	162	0	0.01	0.0112	0.0112	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},LOCAL_REARRANGEMENT:+:[11513],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+	NCIH2887_LUNG	0	0.01	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000251
NCIH2887_LUNG	CTC-228N24.2--CTC-228N24.3	1	1	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	0	186	1	0.01	0.0112	0.0112	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	NCIH2887_LUNG	0.01	1	0.0224	FALSE	0	1	0	12	1	FALSE	ACH-000251
NCIH2887_LUNG	CTC-513N18.7--LSM4	1	1	CTC-513N18.7	1140	chr19:20844250:-	LSM4	9473	chr19:18426875:-	ONLY_REF_SPLICE	NO	60	11	0.03	0.15	0.0112	0.0112	CTC-513N18.7->chr19:20736598-20844389:-,LSM4->LSM4_homolog,_U6_small_nuclear_RNA_and_mRNA_degradation_associated,chr19:18417040-18434084:-	NCIH2887_LUNG	0.03	0.15	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000251
NCIH2887_LUNG	DEGS1--NVL	1	1	DEGS1	2440	chr1:224371120:+	NVL	34991	chr1:224424284:-	ONLY_REF_SPLICE	YES	492	64	0	0.03	0.0112	0.0112	GTEx_v2:{count=3;pct=0.03%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:+:-:[33893],DEGS1->chr1:224363458-224381143:+,delta(4)-desaturase,_sphingolipid_1,NVL->chr1:224415036-224518089:-,nuclear_VCP-like	NCIH2887_LUNG	0	0.03	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000251
NCIH2887_LUNG	DIAPH1--PCDHGA1	1	1	DIAPH1	25475	chr5:140903710:-	PCDHGA1	38142	chr5:140890514:+	ONLY_REF_SPLICE	YES	912	185	0	0.01	0.0112	0.0112	LOCAL_INVERSION:-:+:[2037],DIAPH1->chr5:140894583-140998622:-,diaphanous_related_formin_1,PCDHGA1->chr5:140710252-140892546:+,protocadherin_gamma_subfamily_A,_1	NCIH2887_LUNG	0	0.01	0.0224	FALSE	0	1	0	1	0	FALSE	ACH-000251
NCIH2887_LUNG	IMMP2L--IMMP2L-IT1	1	1	IMMP2L	10595	chr7:110603556:-	IMMP2L-IT1	19872	chr7:110364647:-	ONLY_REF_SPLICE	YES	39	0	0.05	1	0.0112	0.0112	NEIGHBORS_OVERLAP:-:-:[1666],IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,IMMP2L-IT1->chr7:110364215-110365881:-	NCIH2887_LUNG	0.05	1	0.0224	FALSE	0	0	0	2	0	FALSE	ACH-000251
NCIH2887_LUNG	MVB12A--MIDN	1	1	MVB12A	8583	chr19:17534876:+	MIDN	20034	chr19:1255421:+	ONLY_REF_SPLICE	YES	200	57	0.01	0.03	0.0112	0.0112	MVB12A->chr19:17516531-17544533:+,multivesicular_body_subunit_12A,MIDN->chr19:1248552-1259142:+,midnolin	NCIH2887_LUNG	0.01	0.03	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000251
NCIH2887_LUNG	NET1--AKR1E2	1	1	NET1	5634	chr10:5488821:+	AKR1E2	19665	chr10:4872867:+	ONLY_REF_SPLICE	YES	960	1	0	0.67	0.0112	0.0112	NET1->Oncogene{Bushman},chr10:5454514-5500426:+,neuroepithelial_cell_transforming_1,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	NCIH2887_LUNG	0	0.67	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000251
NCIH2887_LUNG	PDGFC--EMCN	1	1	PDGFC	1609	chr4:157891938:-	EMCN	35184	chr4:101386696:-	ONLY_REF_SPLICE	YES	28	2	0.07	0.5	0.0112	0.0112	PDGFC->chr4:157681606-157892546:-,platelet_derived_growth_factor_C,EMCN->chr4:101316498-101801283:-,endomucin	NCIH2887_LUNG	0.07	0.5	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000251
NCIH2887_LUNG	RAPGEF6--CTD-2410N18.5	1	1	RAPGEF6	1275	chr5:130970655:-	CTD-2410N18.5	48968	chr5:133509713:-	ONLY_REF_SPLICE	YES	27	1	0.07	0.67	0.0112	0.0112	RAPGEF6->Rap_guanine_nucleotide_exchange_factor_6,chr5:130759614-130970929:-,CTD-2410N18.5->chr5:133502861-133561762:-	NCIH2887_LUNG	0.07	0.67	0.0224	TRUE	0	0	0	2	0	TRUE	ACH-000251
NCIH2887_LUNG	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0112	0.0112	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH2887_LUNG	0.67	1	0.0224	FALSE	81	155	12	160	0	FALSE	ACH-000251
NCIH2887_LUNG	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	NO	0	30	1	0.06	0.0112	0.0112	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NCIH2887_LUNG	0.06	1	0.0224	FALSE	141	264	50	91	0	FALSE	ACH-000251
NCIH2887_LUNG	RPLP1--KIF23	1	1	RPLP1	1938	chr15:69746060:+	KIF23	14035	chr15:69718409:+	ONLY_REF_SPLICE	YES	4496	178	0	0.01	0.0112	0.0112	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[4359],RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,KIF23->chr15:69706585-69740764:+,kinesin_family_member_23	NCIH2887_LUNG	0	0.01	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000251
NCIH2887_LUNG	SLC35F3--KCNK1	1	1	SLC35F3	1826	chr1:234041504:+	KCNK1	25248	chr1:233802341:+	ONLY_REF_SPLICE	YES	5	65	0.29	0.03	0.0112	0.0112	SLC35F3->chr1:234040679-234460262:+,solute_carrier_family_35_member_F3,KCNK1->chr1:233749750-233808258:+,potassium_two_pore_domain_channel_subfamily_K_member_1	NCIH2887_LUNG	0.03	0.29	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000251
NCIH2887_LUNG	TES--RAD23A	1	1	TES	1242	chr7:115850788:+	RAD23A	14917	chr19:13058662:+	ONLY_REF_SPLICE	YES	475	904	0	0	0.0112	0.0112	TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,RAD23A->Oncogene{Bushman},RAD23_homolog_A,_nucleotide_excision_repair_protein,chr19:13056669-13064456:+	NCIH2887_LUNG	0	0	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000251
NCIH2887_LUNG	TIMM22--HGS	1	1	TIMM22	3070	chr17:902824:+	HGS	24641	chr17:79667497:+	ONLY_REF_SPLICE	YES	260	540	0.01	0	0.0112	0.0112	TIMM22->chr17:900357-906911:+,translocase_of_inner_mitochondrial_membrane_22_homolog_(yeast),HGS->chr17:79650356-79670168:+,hepatocyte_growth_factor-regulated_tyrosine_kinase_substrate	NCIH2887_LUNG	0	0.01	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000251
KYSE70_OESOPHAGUS	TIMM23B--LINC00843	67	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8523	0.229	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KYSE70_OESOPHAGUS	0.99	1	1.0813	TRUE	508	994	45	981	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	TIMM23--RP11-464F9.1	48	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	181	6	0.22	0.89	0.6106	0.0254	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KYSE70_OESOPHAGUS	0.22	0.89	0.636	TRUE	519	3926	326	965	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	LSM12--PAIP1	40	21	LSM12	3290	chr17:42141169:-	PAIP1	15504	chr5:43543218:-	ONLY_REF_SPLICE	YES	76	375	0.45	0.14	0.5088	0.2671	LSM12->LSM12_homolog,chr17:42112003-42144987:-,PAIP1->chr5:43526369-43557860:-,poly(A)_binding_protein_interacting_protein_1	KYSE70_OESOPHAGUS	0.14	0.45	0.7759	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	TRMT10C--SUCLG2	43	6	TRMT10C	1142	chr3:101280847:+	SUCLG2	21571	chr3:67411192:-	ONLY_REF_SPLICE	YES	73	0	0.4	1	0.547	0.0763	TRMT10C->chr3:101280706-101285290:+,tRNA_methyltransferase_10C,_mitochondrial_RNase_P_subunit,SUCLG2->chr3:67410884-67705038:-,succinate-CoA_ligase_GDP-forming_beta_subunit	KYSE70_OESOPHAGUS	0.4	1	0.6233	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	ARHGAP21--SVIL	36	24	ARHGAP21	7212	chr10:24923940:-	SVIL	35575	chr10:29975580:-	ONLY_REF_SPLICE	YES	47	14	0.56	0.81	0.4579	0.3053	ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,SVIL->chr10:29746267-30025710:-,supervillin	KYSE70_OESOPHAGUS	0.56	0.81	0.7632	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	RP11-444D3.1--SOX5	38	12	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4834	0.1526	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KYSE70_OESOPHAGUS	1	1	0.636	TRUE	477	1352	189	275	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	ARHGEF7--TSC22D1	32	6	ARHGEF7	4362	chr13:111806338:+	TSC22D1	51730	chr13:45010231:-	ONLY_REF_SPLICE	YES	15	76	0.72	0.33	0.4071	0.0763	ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,TSC22D1->TSC22_domain_family_member_1,chr13:45007655-45151283:-	KYSE70_OESOPHAGUS	0.33	0.72	0.4834	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	33	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15500	1	0	0.97	0.4198	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.97	0.4325	FALSE	230	193	14	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-TA--MT-TC	32	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4071	0.0127	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE70_OESOPHAGUS	1	1	0.4198	FALSE	462	80	0	856	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	29	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15386	2	0	0.94	0.3689	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.94	0.3816	FALSE	230	198	14	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	RP11-123O10.4--GRIP1	25	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.318	0.0509	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYSE70_OESOPHAGUS	1	1	0.3689	FALSE	416	2512	207	587	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND6--MT-TE	24	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3053	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE70_OESOPHAGUS	1	1	0.3053	FALSE	499	1288	110	792	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	CSNK1G1--FAM96A	19	5	CSNK1G1	1256	chr15:64648187:-	FAM96A	29252	chr15:64367736:-	ONLY_REF_SPLICE	YES	17	241	0.59	0.09	0.2417	0.0636	NEIGHBORS[71499],CSNK1G1->casein_kinase_1_gamma_1,chr15:64457716-64648442:-,FAM96A->chr15:64364758-64386217:-,family_with_sequence_similarity_96_member_A	KYSE70_OESOPHAGUS	0.09	0.59	0.3053	FALSE	0	0	0	1	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	UQCC1--C22orf39	17	10	UQCC1	21609	chr20:33890656:-	C22orf39	29568	chr22:19429097:-	INCL_NON_REF_SPLICE	YES	11	24	0.71	0.53	0.2162	0.1272	UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39	KYSE70_OESOPHAGUS	0.53	0.71	0.3434	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND6--MT-TE	19	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2417	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE70_OESOPHAGUS	1	1	0.2417	FALSE	499	1288	110	792	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	18	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18077	2	0	0.91	0.229	0.0382	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.91	0.2672	FALSE	231	205	14	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	15	14	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	19243	0	0	1	0.1908	0.1781	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	1	0.3689	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	RTN3--LGALS12	17	1	RTN3	1333	chr11:63449250:+	LGALS12	20749	chr11:63276025:+	ONLY_REF_SPLICE	YES	531	4	0.03	0.82	0.2162	0.0127	RTN3->chr11:63448918-63527363:+,reticulon_3,LGALS12->chr11:63273556-63284246:+,lectin,_galactoside_binding_soluble_12	KYSE70_OESOPHAGUS	0.03	0.82	0.2289	TRUE	0	0	0	1	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ATP6--MT-CO2	15	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	46	4	0.3	0.83	0.1908	0.0636	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KYSE70_OESOPHAGUS	0.3	0.83	0.2544	FALSE	59	21	0	114	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	14	9	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19541	2	0	0.92	0.1781	0.1145	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.92	0.2926	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	CSNK1G1--FAM96A	14	8	CSNK1G1	1256	chr15:64648187:-	FAM96A	28202	chr15:64373350:-	ONLY_REF_SPLICE	YES	17	238	0.56	0.08	0.1781	0.1018	NEIGHBORS[71499],CSNK1G1->casein_kinase_1_gamma_1,chr15:64457716-64648442:-,FAM96A->chr15:64364758-64386217:-,family_with_sequence_similarity_96_member_A	KYSE70_OESOPHAGUS	0.08	0.56	0.2799	FALSE	0	0	0	1	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	PPIP5K1--CKMT1A	15	2	PPIP5K1	1351	chr15:43882080:-	CKMT1A	34774	chr15:43990212:+	ONLY_REF_SPLICE	YES	1	80	0.94	0.18	0.1908	0.0254	PPIP5K1->chr15:43825660-43882430:-,diphosphoinositol_pentakisphosphate_kinase_1,CKMT1A->chr15:43985084-43991420:+,creatine_kinase,_mitochondrial_1A	KYSE70_OESOPHAGUS	0.18	0.94	0.2162	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	ZCCHC11--GCM1	14	6	ZCCHC11	10136	chr1:52975268:-	GCM1	48164	chr6:53010566:-	ONLY_REF_SPLICE	YES	45	0	0.31	1	0.1781	0.0763	ZCCHC11->chr1:52873954-53019159:-,zinc_finger_CCHC-type_containing_11,GCM1->chr6:52991762-53013627:-,glial_cells_missing_homolog_1	KYSE70_OESOPHAGUS	0.31	1	0.2544	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	PPIP5K1--CKMT1A	15	0	PPIP5K1	1061	chr15:43882370:-	CKMT1A	34774	chr15:43990212:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1908	0	PPIP5K1->chr15:43825660-43882430:-,diphosphoinositol_pentakisphosphate_kinase_1,CKMT1A->chr15:43985084-43991420:+,creatine_kinase,_mitochondrial_1A	KYSE70_OESOPHAGUS	1	1	0.1908	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	MT-ATP6--MT-CO2	14	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	45	2	0.27	0.89	0.1781	0.0382	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KYSE70_OESOPHAGUS	0.27	0.89	0.2163	FALSE	59	21	0	114	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	ZFHX3--AC004158.2	13	6	ZFHX3	9058	chr16:72984368:-	AC004158.2	34272	chr16:72604414:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1654	0.0763	ZFHX3->Oncogene{Bushman},chr16:72816784-73093597:-,zinc_finger_homeobox_3,AC004158.2->chr16:72459384-72698908:-	KYSE70_OESOPHAGUS	1	1	0.2417	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	11	12	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18569	35	0	0.4	0.1399	0.1526	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.4	0.2925	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	KDM4C--KIAA1432	13	3	KDM4C	27495	chr9:7015929:+	KIAA1432	48608	chr9:5713896:+	ONLY_REF_SPLICE	YES	36	26	0.31	0.38	0.1654	0.0382	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,KIAA1432->chr9:5629025-5776557:+	KYSE70_OESOPHAGUS	0.31	0.38	0.2036	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	11	9	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1399	0.1145	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KYSE70_OESOPHAGUS	0.95	1	0.2544	FALSE	20	187	4	79	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND3--MT-ATP8	13	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1654	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	1	1	0.1654	FALSE	351	233	23	137	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	11	7	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	19268	1462	0	0.01	0.1399	0.089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.01	0.2289	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ATP6--MT-CO2	11	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	46	3	0.26	0.84	0.1399	0.0636	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KYSE70_OESOPHAGUS	0.26	0.84	0.2035	FALSE	59	21	0	114	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	RP11-344E13.3--UBBP4	11	5	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	12	0	0.57	1	0.1399	0.0636	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	KYSE70_OESOPHAGUS	0.57	1	0.2035	TRUE	23	13	0	54	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	8	16	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	17567	0	0	1	0.1018	0.2035	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	1	0.3053	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	FBXL20--ACACA	10	5	FBXL20	3225	chr17:37499433:-	ACACA	48165	chr17:35620797:-	ONLY_REF_SPLICE	YES	10	51	0.6	0.23	0.1272	0.0636	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-	KYSE70_OESOPHAGUS	0.23	0.6	0.1908	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	8	13	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	19496	0	0	1	0.1018	0.1654	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	1	0.2672	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	NFAT5--WWP2	9	6	NFAT5	7172	chr16:69681070:+	WWP2	48713	chr16:69921942:+	ONLY_REF_SPLICE	YES	15	27	0.5	0.36	0.1145	0.0763	{Klijn_CCL:Head-Neck=1},NEIGHBORS[57640],NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,WWP2->WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr16:69796209-69975644:+	KYSE70_OESOPHAGUS	0.36	0.5	0.1908	FALSE	0	0	0	1	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND6--MT-TE	9	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1145	0.0636	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE70_OESOPHAGUS	1	1	0.1781	FALSE	499	1288	110	792	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	7	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17041	35	0	0.35	0.089	0.1526	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.35	0.2416	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	6	16	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18530	0	0	1	0.0763	0.2035	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	1	0.2798	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	RP11-444D3.1--SOX5	7	12	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	1	1	0.95	0.089	0.1526	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KYSE70_OESOPHAGUS	0.95	1	0.2416	TRUE	160	277	29	98	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	6	14	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2740	35	0.01	0.36	0.0763	0.1781	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0.01	0.36	0.2544	FALSE	216	209	16	281	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND6--MT-ND5	9	2	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	2957	1	0	0.1145	0.0254	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KYSE70_OESOPHAGUS	0	1	0.1399	FALSE	101	855	57	72	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	9	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15500	2	0	0.83	0.1145	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.83	0.1272	FALSE	230	193	14	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	8	3	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	19750	0	0	1	0.1018	0.0382	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	1	0.14	FALSE	231	205	14	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	ZCCHC11--GCM1	8	3	ZCCHC11	7906	chr1:52981563:-	GCM1	48164	chr6:53010566:-	ONLY_REF_SPLICE	YES	44	0	0.2	1	0.1018	0.0382	ZCCHC11->chr1:52873954-53019159:-,zinc_finger_CCHC-type_containing_11,GCM1->chr6:52991762-53013627:-,glial_cells_missing_homolog_1	KYSE70_OESOPHAGUS	0.2	1	0.14	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	MIR205HG--C9orf3	8	2	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	95	176	0.1	0.05	0.1018	0.0254	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	KYSE70_OESOPHAGUS	0.05	0.1	0.1272	TRUE	86	303	14	25	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	4	17	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	18430	0	0	1	0.0509	0.2162	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	1	0.2671	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	5	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	17041	151	0	0.1	0.0636	0.1526	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.1	0.2162	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	3	20	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1431	0	0.02	1	0.0382	0.2544	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0.02	1	0.2926	FALSE	216	209	16	281	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	RP11-444D3.1--SOX5	6	7	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0763	0.089	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KYSE70_OESOPHAGUS	0.93	1	0.1653	TRUE	274	363	69	150	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	KIF13A--TPMT	7	2	KIF13A	15599	chr6:17831332:-	TPMT	51621	chr6:18149402:-	ONLY_REF_SPLICE	YES	47	0	0.16	1	0.089	0.0254	{Klijn_CCL:Head-Neck=1,Lymphoid=1},KIF13A->chr6:17759414-17987854:-,kinesin_family_member_13A,TPMT->chr6:18128542-18155305:-,thiopurine_S-methyltransferase	KYSE70_OESOPHAGUS	0.16	1	0.1144	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	MT-ATP6--MT-CO2	6	6	MT-ATP6	1516	chrM:9042:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	6	6	0.67	0.67	0.0763	0.0763	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KYSE70_OESOPHAGUS	0.67	0.67	0.1526	FALSE	59	21	0	114	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	5	10	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	18541	754	0	0.02	0.0636	0.1272	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.02	0.1908	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	4	14	MT-ND4	2326	chrM:12085:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	1	51	0.95	0.26	0.0509	0.1781	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0.26	0.95	0.229	FALSE	209	205	15	279	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	5	10	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	NO	18512	397	0	0.04	0.0636	0.1272	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.04	0.1908	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	RP11-680G10.1--GSE1	7	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	23	1	0.28	0.089	0.0254	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE70_OESOPHAGUS	0.28	1	0.1144	TRUE	465	1949	224	605	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND6--MT-TE	6	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0763	0.0636	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE70_OESOPHAGUS	1	1	0.1399	FALSE	499	1288	110	792	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	NRIP1--AF127936.7	7	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.089	0.0127	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE70_OESOPHAGUS	0.8	1	0.1017	FALSE	292	1546	117	613	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	6	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	21054	0	0	1	0.0763	0.0509	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	1	0.1272	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	3	16	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	18753	0	0	1	0.0382	0.2035	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	1	0.2417	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	6	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	18569	1660	0	0.01	0.0763	0.0509	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.01	0.1272	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MYO9B--AKAP10	6	2	MYO9B	2996	chr19:17213367:+	AKAP10	50070	chr17:19850818:-	ONLY_REF_SPLICE	YES	29	50	0.22	0.14	0.0763	0.0254	MYO9B->chr19:17186591-17325346:+,myosin_IXB,AKAP10->A-kinase_anchoring_protein_10,chr17:19807615-19881656:-	KYSE70_OESOPHAGUS	0.14	0.22	0.1017	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	MT-ATP6--MT-CO2	6	1	MT-ATP6	1098	chrM:8624:+	MT-CO2	5182	chrM:8086:+	INCL_NON_REF_SPLICE	YES	27	3	0.21	0.7	0.0763	0.0127	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KYSE70_OESOPHAGUS	0.21	0.7	0.089	FALSE	59	21	0	114	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	3	13	MT-ND4	1998	chrM:11757:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17661	2	0	0.89	0.0382	0.1654	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.89	0.2036	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	ARHGAP21--SVIL	3	12	ARHGAP21	6119	chr10:24955914:-	SVIL	35575	chr10:29975580:-	ONLY_REF_SPLICE	YES	109	14	0.12	0.52	0.0382	0.1526	ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,SVIL->chr10:29746267-30025710:-,supervillin	KYSE70_OESOPHAGUS	0.12	0.52	0.1908	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	CTD-2337A12.1--CAST	6	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0763	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	KYSE70_OESOPHAGUS	1	1	0.0763	TRUE	347	1186	183	220	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	3	12	MT-ND4	1774	chrM:11533:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	NO	19535	0	0	1	0.0382	0.1526	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	1	0.1908	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	5	4	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	21095	0	0	1	0.0636	0.0509	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	1	0.1145	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	RP4-717I23.3--BCAR3	5	4	RP4-717I23.3	9665	chr1:93790192:-	BCAR3	37675	chr1:94057950:-	ONLY_REF_SPLICE	YES	14	12	0.39	0.43	0.0636	0.0509	RP4-717I23.3->chr1:93727743-93811582:-,BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-	KYSE70_OESOPHAGUS	0.39	0.43	0.1145	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	5	3	MT-ND4	1294	chrM:11053:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	19187	1	0	0.89	0.0636	0.0382	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.89	0.1018	FALSE	231	205	14	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	4	7	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	23225	151	0	0.07	0.0509	0.089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.07	0.1399	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	4	6	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	19513	882	0	0.01	0.0509	0.0763	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.01	0.1272	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	3	10	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	NO	19217	0	0	1	0.0382	0.1272	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	1	0.1654	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-TA--MT-TC	5	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0636	0.0254	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE70_OESOPHAGUS	1	1	0.089	FALSE	462	80	0	856	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	RP11-680G10.1--GSE1	5	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.5	0.0636	0.0254	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE70_OESOPHAGUS	0.5	1	0.089	TRUE	458	1351	185	561	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ATP6--MT-CO2	4	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	46	2	0.16	0.82	0.0509	0.0636	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KYSE70_OESOPHAGUS	0.16	0.82	0.1145	FALSE	59	21	0	114	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND6--MT-TE	4	5	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0509	0.0636	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE70_OESOPHAGUS	0.9	1	0.1145	FALSE	499	1288	110	792	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND6--MT-TE	4	5	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0.0636	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE70_OESOPHAGUS	1	1	0.1145	FALSE	499	1288	110	792	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	NFAT5--WWP2	5	1	NFAT5	4461	chr16:69660431:+	WWP2	48713	chr16:69921942:+	ONLY_REF_SPLICE	YES	21	27	0.22	0.18	0.0636	0.0127	{Klijn_CCL:Head-Neck=1},NEIGHBORS[57640],NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,WWP2->WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr16:69796209-69975644:+	KYSE70_OESOPHAGUS	0.18	0.22	0.0763	FALSE	0	0	0	1	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	5	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0636	0.0127	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE70_OESOPHAGUS	1	1	0.0763	FALSE	407	2205	196	549	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	3	6	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	22830	700	0	0.01	0.0382	0.0763	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.01	0.1145	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	NFAT5--WWP2	3	6	NFAT5	7591	chr16:69681489:+	WWP2	48713	chr16:69921942:+	ONLY_REF_SPLICE	YES	24	27	0.27	0.25	0.0382	0.0763	{Klijn_CCL:Head-Neck=1},NEIGHBORS[57640],NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,WWP2->WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr16:69796209-69975644:+	KYSE70_OESOPHAGUS	0.25	0.27	0.1145	FALSE	0	0	0	1	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ATP6--MT-CO2	4	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	34	2	0.13	0.71	0.0509	0.0127	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KYSE70_OESOPHAGUS	0.13	0.71	0.0636	FALSE	59	21	0	114	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	4	1	MT-ND4	1244	chrM:11003:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	15837	700	0	0.01	0.0509	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.01	0.0636	FALSE	231	204	14	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	4	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15538	35	0	0.12	0.0509	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.12	0.0636	FALSE	230	198	14	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	4	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	16662	1715	0	0	0.0509	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0	0.0636	FALSE	231	204	14	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	3	5	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	21568	0	0	1	0.0382	0.0636	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	1	0.1018	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	ZFHX3--AC004158.2	3	5	ZFHX3	9058	chr16:72984368:-	AC004158.2	36467	chr16:72589225:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0.0636	ZFHX3->Oncogene{Bushman},chr16:72816784-73093597:-,zinc_finger_homeobox_3,AC004158.2->chr16:72459384-72698908:-	KYSE70_OESOPHAGUS	1	1	0.1018	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	HSPA5--GNAS	4	0	HSPA5	1574	chr9:128003036:-	GNAS	32113	chr20:57478790:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	HSPA5->Oncogene{Bushman},chr9:127997132-128003609:-,heat_shock_protein_family_A_(Hsp70)_member_5,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	KYSE70_OESOPHAGUS	1	1	0.0509	TRUE	0	0	0	2	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	3	4	MT-ND4	1452	chrM:11211:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	21635	2	0	0.78	0.0382	0.0509	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.78	0.0891	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND6--MT-ND5	4	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KYSE70_OESOPHAGUS	1	1	0.0509	FALSE	101	855	57	72	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND6--MT-ND5	4	0	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KYSE70_OESOPHAGUS	1	1	0.0509	FALSE	101	855	57	72	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE70_OESOPHAGUS	1	1	0.0509	FALSE	462	80	0	856	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	RP11-444D3.1--SOX5	1	12	RP11-444D3.1	9606	chr12:24366277:-	SOX5	13900	chr12:24102595:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0127	0.1526	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KYSE70_OESOPHAGUS	1	1	0.1653	TRUE	8	10	1	12	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	4	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0509	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE70_OESOPHAGUS	1	1	0.0509	FALSE	515	4851	409	746	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	3	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0382	0.0382	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KYSE70_OESOPHAGUS	0.86	1	0.0764	FALSE	33	240	4	98	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	3	3	MT-ND4	1439	chrM:11198:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	21761	882	0	0.01	0.0382	0.0382	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.01	0.0764	FALSE	231	217	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	LRRC58--RPL24	3	1	LRRC58	1596	chr3:120067591:-	RPL24	14814	chr3:101405401:-	ONLY_REF_SPLICE	YES	68	46	0.06	0.08	0.0382	0.0127	LRRC58->chr3:120043356-120068186:-,leucine_rich_repeat_containing_58,RPL24->chr3:101399935-101405626:-,ribosomal_protein_L24	KYSE70_OESOPHAGUS	0.06	0.08	0.0509	TRUE	0	0	0	1	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	3	1	MT-ND4	1338	chrM:11097:+	MT-ATP8	5531	chrM:8518:+	INCL_NON_REF_SPLICE	YES	21253	1721	0	0	0.0382	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0	0.0509	FALSE	231	215	16	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	3	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15354	2	0	0.67	0.0382	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.67	0.0509	FALSE	230	193	14	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	3	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	NO	15550	51	0	0.07	0.0382	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0.07	0.0509	FALSE	231	204	14	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	3	1	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	17939	1621	0	0	0.0382	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	0	0	0.0509	FALSE	231	205	14	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	LAMP1--MT-CO2	3	0	LAMP1	10039	chr13:113976667:+	MT-CO2	14579	chrM:7805:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KYSE70_OESOPHAGUS	1	1	0.0382	FALSE	0	0	0	6	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MT-ND4--MT-ATP8	3	0	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE70_OESOPHAGUS	1	1	0.0382	FALSE	230	193	14	283	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	16	0	0.27	1	0.0254	0.0509	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE70_OESOPHAGUS	0.27	1	0.0763	FALSE	164	806	69	479	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	OTUD5--MT-ND4L	3	0	OTUD5	9682	chrX:48780079:-	MT-ND4L	13458	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	OTUD5->OTU_deubiquitinase_5,chrX:48779305-48815648:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE70_OESOPHAGUS	1	1	0.0382	FALSE	0	0	0	6	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	NRIP1--AF127936.7	2	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.33	1	0.0254	0.0382	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE70_OESOPHAGUS	0.33	1	0.0636	FALSE	125	705	46	456	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	ZFHX3--AC004158.2	2	2	ZFHX3	9058	chr16:72984368:-	AC004158.2	37529	chr16:72574510:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0.0254	ZFHX3->Oncogene{Bushman},chr16:72816784-73093597:-,zinc_finger_homeobox_3,AC004158.2->chr16:72459384-72698908:-	KYSE70_OESOPHAGUS	1	1	0.0508	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	PPP5C--IGFL2	2	0	PPP5C	4437	chr19:46879831:+	IGFL2	23299	chr19:46663672:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,IGFL2->IGF_like_family_member_2,chr19:46646363-46664556:+	KYSE70_OESOPHAGUS	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	RP11-123O10.4--GRIP1	1	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0127	0.0509	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYSE70_OESOPHAGUS	1	1	0.0636	FALSE	9	21	5	22	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	SLC39A14--DMTN	2	0	SLC39A14	13202	chr8:22273793:+	DMTN	37204	chr8:21937691:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	SLC39A14->chr8:22224762-22291642:+,solute_carrier_family_39_member_14,DMTN->chr8:21906506-21940038:+,dematin_actin_binding_protein	KYSE70_OESOPHAGUS	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	STAG1--TMEM168	2	0	STAG1	4564	chr3:136323151:-	TMEM168	51209	chr7:112415373:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,TMEM168->chr7:112402437-112430647:-,transmembrane_protein_168	KYSE70_OESOPHAGUS	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	TGIF1--MYL12B	2	0	TGIF1	8043	chr18:3450503:+	MYL12B	20407	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Lung=1},TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	KYSE70_OESOPHAGUS	1	1	0.0254	TRUE	0	2	0	6	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	WTAPP1--RUVBL1	2	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	KYSE70_OESOPHAGUS	1	1	0.0254	TRUE	9	252	6	66	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	ARHGAP21--SVIL	1	3	ARHGAP21	2832	chr10:25010766:-	SVIL	35575	chr10:29975580:-	ONLY_REF_SPLICE	NO	115	14	0.03	0.22	0.0127	0.0382	ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,SVIL->chr10:29746267-30025710:-,supervillin	KYSE70_OESOPHAGUS	0.03	0.22	0.0509	TRUE	0	0	0	1	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0127	0.0382	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYSE70_OESOPHAGUS	0.8	1	0.0509	FALSE	93	270	15	244	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	GNG10--UGCG	1	2	GNG10	2513	chr9:114429226:+	UGCG	9040	chr9:114676885:+	ONLY_REF_SPLICE	YES	256	98	0.01	0.03	0.0127	0.0254	GTEx_FI:{Brain=[count:10=pct:1.5],Blood=[count:7=pct:4.0],Adipose_Tissue=[count:5=pct:1.7],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Uterus=[count:1=pct:2.3],Esophagus=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6]},GNG10->G_protein_subunit_gamma_10,chr9:114423615-114432526:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	KYSE70_OESOPHAGUS	0.01	0.03	0.0381	FALSE	28	83	9	3	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	ITGA3--RP11-1094H24.3	1	2	ITGA3	17255	chr17:48158772:+	RP11-1094H24.3	26548	chr17:48093762:+	ONLY_REF_SPLICE	NO	93	0	0.03	1	0.0127	0.0254	LOCAL_REARRANGEMENT:+:[39124],ITGA3->chr17:48133332-48167845:+,integrin_subunit_alpha_3,RP11-1094H24.3->chr17:48074253-48094208:+	KYSE70_OESOPHAGUS	0.03	1	0.0381	TRUE	0	0	0	1	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	MIR205HG--C9orf3	1	2	MIR205HG	4006	chr1:209605170:+	C9orf3	44060	chr9:97848212:+	ONLY_REF_SPLICE	YES	95	176	0.03	0.02	0.0127	0.0254	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	KYSE70_OESOPHAGUS	0.02	0.03	0.0381	TRUE	86	303	14	25	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	RP11-78F17.1--RP11-419J16.1	1	2	RP11-78F17.1	1307	chr18:976896:+	RP11-419J16.1	13519	chr18:10144154:+	ONLY_REF_SPLICE	YES	25	0	0.11	1	0.0127	0.0254	RP11-78F17.1->chr18:976590-1174824:+,RP11-419J16.1->chr18:10125337-10144403:+	KYSE70_OESOPHAGUS	0.11	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	ZFHX3--AC004158.2	1	2	ZFHX3	9058	chr16:72984368:-	AC004158.2	38563	chr16:72557314:-	ONLY_REF_SPLICE	YES	0	2	1	0.6	0.0127	0.0254	ZFHX3->Oncogene{Bushman},chr16:72816784-73093597:-,zinc_finger_homeobox_3,AC004158.2->chr16:72459384-72698908:-	KYSE70_OESOPHAGUS	0.6	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000784
KYSE70_OESOPHAGUS	ATXN1--RP1-151F17.1	1	1	ATXN1	1194	chr6:16761529:-	RP1-151F17.1	34376	chr6:16762350:+	ONLY_REF_SPLICE	YES	24	6	0.08	0.25	0.0127	0.0127	NEIGHBORS_OVERLAP:-:+:[353],ATXN1->ataxin_1,chr6:16299343-16761722:-,RP1-151F17.1->chr6:16761369-16762883:+	KYSE70_OESOPHAGUS	0.08	0.25	0.0254	FALSE	0	2	1	2	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	DCAF5--EVL	1	1	DCAF5	7176	chr14:69583083:-	EVL	48213	chr14:100607517:+	ONLY_REF_SPLICE	YES	44	34	0.04	0.06	0.0127	0.0127	DCAF5->DDB1_and_CUL4_associated_factor_5,chr14:69517598-69619867:-,EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+	KYSE70_OESOPHAGUS	0.04	0.06	0.0254	TRUE	0	0	0	1	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	FGF14-IT1--FGF14	1	1	FGF14-IT1	3717	chr13:103018795:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0127	0.0127	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	KYSE70_OESOPHAGUS	0.67	1	0.0254	TRUE	80	58	2	10	0	FALSE	ACH-000784
KYSE70_OESOPHAGUS	IGF2BP2--TRA2B	1	1	IGF2BP2	2393	chr3:185540941:-	TRA2B	30253	chr3:185649640:-	ONLY_REF_SPLICE	YES	110	535	0.02	0	0.0127	0.0127	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	KYSE70_OESOPHAGUS	0	0.02	0.0254	FALSE	0	7	0	3	1	FALSE	ACH-000784
A549_LUNG	RICTOR--FYB	84	39	RICTOR	1298	chr5:39074213:-	FYB	55842	chr5:39141243:-	ONLY_REF_SPLICE	YES	6	0	0.95	1	0.911	0.423	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[30828],RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-,FYB->FYN_binding_protein,chr5:39105338-39274630:-	A549_LUNG	0.95	1	1.334	TRUE	0	1	0	1	1	TRUE	ACH-000681
A549_LUNG	TIMM23B--LINC00843	80	43	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8676	0.4663	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	A549_LUNG	1	1	1.3339	TRUE	508	994	45	981	0	FALSE	ACH-000681
A549_LUNG	MT-ATP6--MT-RNR2	59	1	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	19066	24029	0	0	0.6399	0.0108	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A549_LUNG	0	0	0.6507	FALSE	63	17	1	58	0	FALSE	ACH-000681
A549_LUNG	MT-ND6--MT-TE	53	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5748	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A549_LUNG	1	1	0.5748	FALSE	499	1288	110	792	0	FALSE	ACH-000681
A549_LUNG	MT-ND6--MT-TE	52	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5639	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A549_LUNG	1	1	0.5639	FALSE	499	1288	110	792	0	FALSE	ACH-000681
A549_LUNG	SCAMP2--WDR72	41	32	SCAMP2	8977	chr15:75137814:-	WDR72	25514	chr15:53998271:-	ONLY_REF_SPLICE	YES	232	0	0.24	1	0.4446	0.347	{Klijn_CCL:Lung=1},SCAMP2->chr15:75136071-75165706:-,secretory_carrier_membrane_protein_2,WDR72->WD_repeat_domain_72,chr15:53805938-54055075:-	A549_LUNG	0.24	1	0.7916	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	TIMM23--RP11-464F9.1	44	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	804	4	0.06	0.93	0.4772	0.0868	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	A549_LUNG	0.06	0.93	0.564	TRUE	519	3926	326	965	0	FALSE	ACH-000681
A549_LUNG	MT-TA--MT-TC	38	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4121	0.0325	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A549_LUNG	1	1	0.4446	FALSE	462	80	0	856	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-ND4L	37	2	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	133	0	0.23	1	0.4013	0.0217	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A549_LUNG	0.23	1	0.423	FALSE	344	827	44	306	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-ND4L	32	6	MT-ND4	1170	chrM:10929:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	45	0	0.46	1	0.347	0.0651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A549_LUNG	0.46	1	0.4121	FALSE	344	826	44	306	0	FALSE	ACH-000681
A549_LUNG	KANSL1--ARL17B	23	30	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	43	66	0.55	0.45	0.2494	0.3253	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	A549_LUNG	0.45	0.55	0.5747	TRUE	181	1564	124	196	0	FALSE	ACH-000681
A549_LUNG	MT-ATP6--MT-RNR2	29	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3145	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A549_LUNG	1	1	0.3145	FALSE	63	17	1	58	0	FALSE	ACH-000681
A549_LUNG	C15orf57--CBX3	22	26	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	71	33	0.4	0.59	0.2386	0.282	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A549_LUNG	0.4	0.59	0.5206	TRUE	267	562	48	632	0	FALSE	ACH-000681
A549_LUNG	MT-ND5--MT-ATP8	22	7	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2386	0.0759	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A549_LUNG	0.97	1	0.3145	FALSE	43	37	8	105	0	FALSE	ACH-000681
A549_LUNG	AP003900.6--AC011718.2	20	9	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.2169	0.0976	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A549_LUNG	0.94	1	0.3145	TRUE	0	3	0	38	3	FALSE	ACH-000681
A549_LUNG	MT-ND5--MT-ATP8	20	5	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5731	3	0	0.89	0.2169	0.0542	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A549_LUNG	0	0.89	0.2711	FALSE	43	37	8	105	0	FALSE	ACH-000681
A549_LUNG	MT-ND6--MT-TE	21	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2277	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A549_LUNG	1	1	0.2277	FALSE	499	1288	110	792	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-ND4L	8	39	MT-ND4	1942	chrM:11701:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	25055	0	0	1	0.0868	0.423	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A549_LUNG	0	1	0.5098	FALSE	344	827	44	306	0	FALSE	ACH-000681
A549_LUNG	MT-TA--MT-TC	17	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1844	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A549_LUNG	1	1	0.1844	FALSE	462	80	0	856	0	FALSE	ACH-000681
A549_LUNG	AP003900.6--AC011718.2	8	35	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	18	0	0.7	1	0.0868	0.3796	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A549_LUNG	0.7	1	0.4664	TRUE	0	5	0	45	5	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-ND4L	13	14	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	9	0	0.75	1	0.141	0.1518	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A549_LUNG	0.75	1	0.2928	FALSE	344	821	44	306	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-ND4L	13	12	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	10866	0	0	1	0.141	0.1301	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A549_LUNG	0	1	0.2711	FALSE	344	827	44	306	0	FALSE	ACH-000681
A549_LUNG	MT-CO3--MT-ATP6	14	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1518	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A549_LUNG	1	1	0.1518	FALSE	189	492	56	216	0	FALSE	ACH-000681
A549_LUNG	RP11-123O10.4--GRIP1	12	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1301	0.0759	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	A549_LUNG	1	1	0.206	FALSE	416	2512	207	587	0	FALSE	ACH-000681
A549_LUNG	ZNF43--RP11-69H14.6	11	11	ZNF43	11476	chr19:22018838:-	RP11-69H14.6	32259	chr15:22318877:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1193	0.1193	ZNF43->chr19:21987752-22034927:-,zinc_finger_protein_43,RP11-69H14.6->chr15:22278010-22413497:+	A549_LUNG	1	1	0.2386	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	MT-ND4--MT-RNR2	11	7	MT-ND4	1843	chrM:11602:+	MT-RNR2	5709	chrM:2001:+	INCL_NON_REF_SPLICE	NO	25534	20758	0	0	0.1193	0.0759	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A549_LUNG	0	0	0.1952	FALSE	13	19	3	21	0	FALSE	ACH-000681
A549_LUNG	MT-CO3--MT-ATP6	10	10	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	21	16	0.49	0.56	0.1084	0.1084	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A549_LUNG	0.49	0.56	0.2168	FALSE	189	492	56	216	0	FALSE	ACH-000681
A549_LUNG	MT-CO3--MT-ATP6	7	22	MT-CO3	1642	chrM:9848:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	NO	0	37	1	0.44	0.0759	0.2386	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A549_LUNG	0.44	1	0.3145	FALSE	189	492	56	216	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-ND4L	6	25	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	32	0	0.49	1	0.0651	0.2711	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A549_LUNG	0.49	1	0.3362	FALSE	344	826	44	306	0	FALSE	ACH-000681
A549_LUNG	MT-ND6--MT-TE	12	0	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1301	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A549_LUNG	1	1	0.1301	FALSE	499	1288	110	792	0	FALSE	ACH-000681
A549_LUNG	C15orf57--CBX3	7	19	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	70	34	0.27	0.43	0.0759	0.2061	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A549_LUNG	0.27	0.43	0.282	TRUE	267	562	48	632	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-ND4L	5	25	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	18	0	0.62	1	0.0542	0.2711	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A549_LUNG	0.62	1	0.3253	FALSE	344	826	44	306	0	FALSE	ACH-000681
A549_LUNG	MT-CO3--MT-ATP6	9	3	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	17	0.92	0.41	0.0976	0.0325	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A549_LUNG	0.41	0.92	0.1301	FALSE	189	492	56	216	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-ND4L	6	15	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1295	0	0.02	1	0.0651	0.1627	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A549_LUNG	0.02	1	0.2278	FALSE	344	827	44	306	0	FALSE	ACH-000681
A549_LUNG	RP11-603B24.1--HERC2P3	8	7	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0868	0.0759	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	A549_LUNG	1	1	0.1627	TRUE	27	10	1	20	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-ND4L	3	25	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	35	0	0.44	1	0.0325	0.2711	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A549_LUNG	0.44	1	0.3036	FALSE	344	826	44	306	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-ND4L	6	11	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	828	0	0.02	1	0.0651	0.1193	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A549_LUNG	0.02	1	0.1844	FALSE	344	827	44	306	0	FALSE	ACH-000681
A549_LUNG	MT-CO3--MT-ATP6	8	2	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	31	1	0.24	0.91	0.0868	0.0217	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A549_LUNG	0.24	0.91	0.1085	FALSE	189	492	56	216	0	FALSE	ACH-000681
A549_LUNG	SCAMP2--WDR72	1	30	SCAMP2	8977	chr15:75137814:-	WDR72	25520	chr15:53998265:-	ONLY_REF_SPLICE	YES	232	0	0.12	1	0.0108	0.3253	{Klijn_CCL:Lung=1},SCAMP2->chr15:75136071-75165706:-,secretory_carrier_membrane_protein_2,WDR72->WD_repeat_domain_72,chr15:53805938-54055075:-	A549_LUNG	0.12	1	0.3361	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	MT-ATP6--MT-RNR2	8	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0868	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A549_LUNG	1	1	0.0868	FALSE	63	17	1	58	0	FALSE	ACH-000681
A549_LUNG	MT-ATP6--MT-RNR2	8	0	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0868	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A549_LUNG	1	1	0.0868	FALSE	63	17	1	58	0	FALSE	ACH-000681
A549_LUNG	MT-CO3--MT-ATP6	8	0	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0868	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A549_LUNG	1	1	0.0868	FALSE	189	492	56	216	0	FALSE	ACH-000681
A549_LUNG	MT-ND6--MT-TE	8	0	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0868	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A549_LUNG	1	1	0.0868	FALSE	499	1288	110	792	0	FALSE	ACH-000681
A549_LUNG	MT-CO3--MT-ATP6	3	19	MT-CO3	1646	chrM:9852:+	MT-ATP6	5173	chrM:8915:+	INCL_NON_REF_SPLICE	YES	0	101	1	0.18	0.0325	0.2061	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A549_LUNG	0.18	1	0.2386	FALSE	189	492	56	216	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-ND4L	5	11	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1507	0	0.01	1	0.0542	0.1193	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A549_LUNG	0.01	1	0.1735	FALSE	344	827	44	306	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-RNR2	7	3	MT-ND4	1209	chrM:10968:+	MT-RNR2	5415	chrM:1707:+	INCL_NON_REF_SPLICE	NO	20082	0	0	1	0.0759	0.0325	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A549_LUNG	0	1	0.1084	FALSE	13	19	3	21	0	FALSE	ACH-000681
A549_LUNG	RICTOR--FYB	5	11	RICTOR	1080	chr5:39074431:-	FYB	55842	chr5:39141243:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0542	0.1193	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[30828],RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-,FYB->FYN_binding_protein,chr5:39105338-39274630:-	A549_LUNG	1	1	0.1735	TRUE	0	1	0	1	1	TRUE	ACH-000681
A549_LUNG	MT-CO3--MT-ATP6	5	10	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	23	16	0.39	0.48	0.0542	0.1084	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A549_LUNG	0.39	0.48	0.1626	FALSE	189	492	56	216	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-ND4L	3	17	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	11	0	0.65	1	0.0325	0.1844	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A549_LUNG	0.65	1	0.2169	FALSE	344	826	44	306	0	FALSE	ACH-000681
A549_LUNG	MT-ND6--MT-TE	7	0	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0759	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A549_LUNG	1	1	0.0759	FALSE	499	1288	110	792	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-ND4L	5	7	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	63	0	0.16	1	0.0542	0.0759	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A549_LUNG	0.16	1	0.1301	FALSE	344	826	44	306	0	FALSE	ACH-000681
A549_LUNG	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0.0325	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A549_LUNG	1	1	0.0976	FALSE	462	80	0	856	0	FALSE	ACH-000681
A549_LUNG	ZNF43--RP11-69H14.6	6	3	ZNF43	5509	chr19:22025947:-	RP11-69H14.6	32259	chr15:22318877:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0651	0.0325	ZNF43->chr19:21987752-22034927:-,zinc_finger_protein_43,RP11-69H14.6->chr15:22278010-22413497:+	A549_LUNG	0.9	1	0.0976	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	AP003900.6--AC011718.2	2	18	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	18	0	0.53	1	0.0217	0.1952	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A549_LUNG	0.53	1	0.2169	TRUE	0	1	0	20	1	FALSE	ACH-000681
A549_LUNG	AP003900.6--AC011718.2	5	5	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0542	0.0542	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A549_LUNG	0.83	1	0.1084	TRUE	0	1	0	26	1	FALSE	ACH-000681
A549_LUNG	MT-ND3--MT-CO3	6	1	MT-ND3	1064	chrM:10122:+	MT-CO3	5089	chrM:9949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0.0108	LOCAL_REARRANGEMENT:+:[69],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	A549_LUNG	1	1	0.0759	FALSE	2	2	0	11	0	FALSE	ACH-000681
A549_LUNG	MT-ND5--MT-ATP8	5	5	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8393	185	0	0.05	0.0542	0.0542	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A549_LUNG	0	0.05	0.1084	FALSE	43	37	8	105	0	FALSE	ACH-000681
A549_LUNG	MT-CO3--MT-ATP6	3	12	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	38	13	0.28	0.54	0.0325	0.1301	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A549_LUNG	0.28	0.54	0.1626	FALSE	189	492	56	216	0	FALSE	ACH-000681
A549_LUNG	MT-ND1--MT-RNR2	5	4	MT-ND1	1018	chrM:3324:+	MT-RNR2	6435	chrM:3149:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.82	0.0542	0.0434	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A549_LUNG	0.82	1	0.0976	FALSE	92	22	4	61	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-ND4L	6	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A549_LUNG	1	1	0.0651	FALSE	344	821	44	306	0	FALSE	ACH-000681
A549_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A549_LUNG	1	1	0.0651	FALSE	499	1288	110	792	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-RNR2	3	10	MT-ND4	1824	chrM:11583:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	25334	0	0	1	0.0325	0.1084	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A549_LUNG	0	1	0.1409	FALSE	13	19	3	21	0	FALSE	ACH-000681
A549_LUNG	AP003900.6--AC011718.2	5	1	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	2	6	0.75	0.5	0.0542	0.0108	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A549_LUNG	0.5	0.75	0.065	TRUE	0	1	0	21	1	FALSE	ACH-000681
A549_LUNG	MT-ATP6--MT-CO1	5	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	16271	40022	0	0	0.0542	0.0108	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A549_LUNG	0	0	0.065	FALSE	183	104	9	328	0	FALSE	ACH-000681
A549_LUNG	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	16494	0	0	1	0.0542	0.0108	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A549_LUNG	0	1	0.065	FALSE	63	17	1	58	0	FALSE	ACH-000681
A549_LUNG	MT-CO3--MT-ATP6	4	5	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	38	0.9	0.19	0.0434	0.0542	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A549_LUNG	0.19	0.9	0.0976	FALSE	189	492	56	216	0	FALSE	ACH-000681
A549_LUNG	MT-ND1--MT-RNR2	3	9	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	18	0	0.4	1	0.0325	0.0976	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A549_LUNG	0.4	1	0.1301	FALSE	114	26	4	85	0	FALSE	ACH-000681
A549_LUNG	MT-ND6--MT-TE	5	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0.0108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A549_LUNG	1	1	0.065	FALSE	499	1288	110	792	0	FALSE	ACH-000681
A549_LUNG	SCAMP2--WDR72	2	13	SCAMP2	7682	chr15:75140941:-	WDR72	25514	chr15:53998271:-	ONLY_REF_SPLICE	YES	236	0	0.06	1	0.0217	0.141	{Klijn_CCL:Lung=1},SCAMP2->chr15:75136071-75165706:-,secretory_carrier_membrane_protein_2,WDR72->WD_repeat_domain_72,chr15:53805938-54055075:-	A549_LUNG	0.06	1	0.1627	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A549_LUNG	1	1	0.0542	FALSE	499	1288	110	792	0	FALSE	ACH-000681
A549_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A549_LUNG	1	1	0.0542	FALSE	499	1288	110	792	0	FALSE	ACH-000681
A549_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A549_LUNG	1	1	0.0542	FALSE	499	1288	110	792	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-ND4L	3	6	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	9	0	0.5	1	0.0325	0.0651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A549_LUNG	0.5	1	0.0976	FALSE	344	821	44	306	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-RNR2	4	2	MT-ND4	1209	chrM:10968:+	MT-RNR2	5933	chrM:2225:+	INCL_NON_REF_SPLICE	YES	20082	24202	0	0	0.0434	0.0217	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A549_LUNG	0	0	0.0651	FALSE	13	19	3	21	0	FALSE	ACH-000681
A549_LUNG	NCEH1--MUC13	2	10	NCEH1	1372	chr3:172428637:-	MUC13	14570	chr3:124658364:-	ONLY_REF_SPLICE	YES	211	0	0.05	1	0.0217	0.1084	NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,MUC13->Oncogene{Bushman},chr3:124624289-124672663:-,mucin_13,_cell_surface_associated	A549_LUNG	0.05	1	0.1301	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0325	0.0651	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A549_LUNG	0.82	1	0.0976	FALSE	407	2205	196	549	0	FALSE	ACH-000681
A549_LUNG	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	16215	39835	0	0	0.0434	0.0108	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A549_LUNG	0	0	0.0542	FALSE	183	104	9	328	0	FALSE	ACH-000681
A549_LUNG	MT-ND1--MT-RNR2	3	5	MT-ND1	1106	chrM:3412:+	MT-RNR2	6448	chrM:3162:+	INCL_NON_REF_SPLICE	YES	8	0	0.5	1	0.0325	0.0542	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A549_LUNG	0.5	1	0.0867	FALSE	92	22	4	61	0	FALSE	ACH-000681
A549_LUNG	MT-ND1--MT-RNR2	3	5	MT-ND1	1027	chrM:3333:+	MT-RNR2	6484	chrM:3198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0.0542	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A549_LUNG	1	1	0.0867	FALSE	92	21	4	61	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-ND4L	4	1	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.0434	0.0108	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A549_LUNG	0.56	1	0.0542	FALSE	344	821	44	306	0	FALSE	ACH-000681
A549_LUNG	MT-ND4--MT-ND4L	4	1	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	54	0	0.08	1	0.0434	0.0108	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A549_LUNG	0.08	1	0.0542	FALSE	344	826	44	306	0	FALSE	ACH-000681
A549_LUNG	AP003900.6--AC011718.2	2	8	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	18	6	0.36	0.62	0.0217	0.0868	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A549_LUNG	0.36	0.62	0.1085	TRUE	0	1	0	24	1	FALSE	ACH-000681
A549_LUNG	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0434	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A549_LUNG	1	1	0.0434	FALSE	63	17	1	58	0	FALSE	ACH-000681
A549_LUNG	MT-CO3--MT-ATP6	3	4	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	11	0.88	0.39	0.0325	0.0434	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A549_LUNG	0.39	0.88	0.0759	FALSE	189	492	56	216	0	FALSE	ACH-000681
A549_LUNG	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0434	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A549_LUNG	1	1	0.0434	FALSE	292	1546	117	613	0	FALSE	ACH-000681
A549_LUNG	MT-CO3--MT-ATP6	3	3	MT-CO3	1149	chrM:9355:+	MT-ATP6	5426	chrM:9168:+	INCL_NON_REF_SPLICE	YES	25	2	0.19	0.75	0.0325	0.0325	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A549_LUNG	0.19	0.75	0.065	FALSE	189	492	56	216	0	FALSE	ACH-000681
A549_LUNG	CPSF6--C9orf3	3	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	267	1019	0.01	0	0.0325	0.0108	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	A549_LUNG	0	0.01	0.0433	FALSE	53	99	2	44	0	FALSE	ACH-000681
A549_LUNG	RP11-120D5.1--MID1	3	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	17	42	0.19	0.09	0.0325	0.0108	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	A549_LUNG	0.09	0.19	0.0433	FALSE	0	5	0	14	0	FALSE	ACH-000681
A549_LUNG	G2E3--DAPK1	3	0	G2E3	1150	chr14:31028478:+	DAPK1	34294	chr9:90219869:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	G2E3->G2/M-phase_specific_E3_ubiquitin_protein_ligase,chr14:31028329-31089269:+,DAPK1->Oncogene{Bushman},chr9:90112143-90323548:+,death_associated_protein_kinase_1	A549_LUNG	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A549_LUNG	1	1	0.0325	FALSE	63	17	1	58	0	FALSE	ACH-000681
A549_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A549_LUNG	1	1	0.0325	FALSE	189	492	56	216	0	FALSE	ACH-000681
A549_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A549_LUNG	1	1	0.0325	FALSE	189	492	56	216	0	FALSE	ACH-000681
A549_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1192	chrM:9398:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A549_LUNG	1	1	0.0325	FALSE	189	492	56	216	0	FALSE	ACH-000681
A549_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1289	chrM:14385:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A549_LUNG	1	1	0.0325	FALSE	499	1288	110	792	0	FALSE	ACH-000681
A549_LUNG	NSD1--CANX	3	0	NSD1	4006	chr5:176563031:+	CANX	50839	chr5:179132680:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,CANX->calnexin,chr5:179105629-179157926:+	A549_LUNG	1	1	0.0325	TRUE	0	0	0	2	0	TRUE	ACH-000681
A549_LUNG	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0108	0.0868	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A549_LUNG	1	1	0.0976	FALSE	192	492	57	212	0	FALSE	ACH-000681
A549_LUNG	CRIM1--FEZ2	2	3	CRIM1	18863	chr2:36749456:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	695	543	0.01	0.01	0.0217	0.0325	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	A549_LUNG	0.01	0.01	0.0542	FALSE	2	2	0	15	0	FALSE	ACH-000681
A549_LUNG	RP11-123O10.4--GRIP1	2	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0.0325	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	A549_LUNG	1	1	0.0542	FALSE	93	270	15	244	0	FALSE	ACH-000681
A549_LUNG	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0217	0.0325	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A549_LUNG	0.71	1	0.0542	FALSE	515	4851	409	746	0	FALSE	ACH-000681
A549_LUNG	KANSL1--ARL17B	2	2	KANSL1	7536	chr17:44248221:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	52	40	0.07	0.09	0.0217	0.0217	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	A549_LUNG	0.07	0.09	0.0434	TRUE	0	0	0	6	0	FALSE	ACH-000681
A549_LUNG	NCEH1--MUC13	1	6	NCEH1	1372	chr3:172428637:-	MUC13	15696	chr3:124657176:-	ONLY_REF_SPLICE	YES	211	1	0.03	0.88	0.0108	0.0651	NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,MUC13->Oncogene{Bushman},chr3:124624289-124672663:-,mucin_13,_cell_surface_associated	A549_LUNG	0.03	0.88	0.0759	TRUE	0	0	0	1	0	FALSE	ACH-000681
A549_LUNG	TXNRD1--NFYB	2	1	TXNRD1	11664	chr12:104682818:+	NFYB	36515	chr12:104529310:-	ONLY_REF_SPLICE	YES	3412	84	0	0.03	0.0217	0.0108	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:+:-:[77490],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	A549_LUNG	0	0.03	0.0325	FALSE	0	0	0	6	0	FALSE	ACH-000681
A549_LUNG	ANXA1--ALDH1A1	2	0	ANXA1	1168	chr9:75766840:+	ALDH1A1	21839	chr9:75555168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	LOCAL_INVERSION:+:-:[71315],ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+,ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-	A549_LUNG	1	1	0.0217	TRUE	0	0	0	4	0	TRUE	ACH-000681
A549_LUNG	APP--PRMT2	2	0	APP	1565	chr21:27542882:-	PRMT2	37343	chr21:48068370:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,PRMT2->chr21:48055079-48085036:+,protein_arginine_methyltransferase_2	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	BRD3--VAV2	2	0	BRD3	1591	chr9:136933067:-	VAV2	29219	chr9:136699462:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	NEIGHBORS[37701],BRD3->Oncogene{Bushman},bromodomain_containing_3,chr9:136895427-136933657:-,VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2	A549_LUNG	1	1	0.0217	FALSE	0	0	0	1	0	FALSE	ACH-000681
A549_LUNG	CASKIN1--NPIPA5	2	0	CASKIN1	3519	chr16:2239028:-	NPIPA5	22743	chr16:15459491:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	CASKIN1->CASK_interacting_protein_1,chr16:2227184-2246526:-,NPIPA5->chr16:15457516-15474904:-,nuclear_pore_complex_interacting_protein_family_member_A5	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	COPB2--NPM1	2	0	COPB2	1185	chr3:139108390:-	NPM1	34619	chr5:170832306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	COTL1--FAM195B	2	0	COTL1	1577	chr16:84651107:-	FAM195B	17916	chr17:79782430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1,FAM195B->chr17:79780287-79791178:-	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	A549_LUNG	1	1	0.0217	TRUE	0	9	0	44	1	FALSE	ACH-000681
A549_LUNG	DUSP16--IPO11	2	0	DUSP16	2384	chr12:12713934:-	IPO11	46295	chr5:61846194:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	DUSP16->chr12:12628829-12715317:-,dual_specificity_phosphatase_16,IPO11->chr5:61699799-61924409:+,importin_11	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	FOXRED1--PGD	2	0	FOXRED1	3074	chr11:126141552:+	PGD	15530	chr1:10463128:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	FOXRED1->FAD-dependent_oxidoreductase_domain_containing_1,chr11:126138950-126148026:+,PGD->chr1:10458649-10480201:+,phosphogluconate_dehydrogenase	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	GAS2L3--CTA-392C11.1	2	0	GAS2L3	10970	chr12:101005919:+	CTA-392C11.1	28214	chr8:40156973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GAS2L3->chr12:100967461-101022064:+,growth_arrest_specific_2_like_3,CTA-392C11.1->chr8:40156260-40200921:-	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	ITGAV--TNKS2	2	0	ITGAV	26233	chr2:187534541:+	TNKS2	56411	chr10:93614786:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	ITGAV->chr2:187454792-187545628:+,integrin_subunit_alpha_V,TNKS2->chr10:93558069-93625033:+,tankyrase_2	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	KIAA1429--DPY19L4	2	0	KIAA1429	1145	chr8:95565613:-	DPY19L4	40822	chr8:95768264:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	KIAA1429->KIAA1429,chr8:95499921-95565757:-,DPY19L4->chr8:95731931-95806064:+,dpy-19_like_4_(C._elegans)	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	LENG1--TBCB	2	0	LENG1	2499	chr19:54662020:-	TBCB	16395	chr19:36616353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	LENG1->chr19:54658899-54663620:-,leukocyte_receptor_cluster_(LRC)_member_1,TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	LSM14A--CCDC9	2	0	LSM14A	7266	chr19:34706205:+	CCDC9	26565	chr19:47774531:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+,CCDC9->chr19:47759237-47775210:+,coiled-coil_domain_containing_9	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	MAP4--USP21	2	0	MAP4	5952	chr3:48019355:-	USP21	42941	chr1:161132405:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,USP21->chr1:161129240-161135513:+,ubiquitin_specific_peptidase_21	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	NAA25--ANXA2	2	0	NAA25	1307	chr12:112546520:-	ANXA2	46426	chr15:60678285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	NCEH1--MUC13	2	0	NCEH1	1372	chr3:172428637:-	MUC13	17967	chr3:124646837:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,MUC13->Oncogene{Bushman},chr3:124624289-124672663:-,mucin_13,_cell_surface_associated	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	PIGT--TXNDC11	2	0	PIGT	4460	chr20:44049333:+	TXNDC11	12782	chr16:11830089:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	PIGT->chr20:44044717-44054884:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_T,TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	PPP2R2A--PHF14	2	0	PPP2R2A	3250	chr8:26151256:+	PHF14	41295	chr7:11101418:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	PPRC1--RNF10	2	0	PPRC1	2381	chr10:103897795:+	RNF10	24286	chr12:120992521:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	PPRC1->chr10:103892787-103910082:+,peroxisome_proliferator-activated_receptor_gamma,_coactivator-related_1,RNF10->chr12:120971283-121015397:+,ring_finger_protein_10	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	SASS6--HIAT1	2	0	SASS6	1206	chr1:100598306:-	HIAT1	21221	chr1:100515465:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	LOCAL_INVERSION:-:+:[186],SASS6->SAS-6_centriolar_assembly_protein,chr1:100549119-100598511:-,HIAT1->chr1:100503653-100548933:+	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	TJP1--APBA2	2	0	TJP1	3834	chr15:30114205:-	APBA2	47274	chr15:29213843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	TJP1->chr15:29991571-30261068:-,tight_junction_protein_1,APBA2->amyloid_beta_precursor_protein_binding_family_A_member_2,chr15:29129629-29410518:+	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	TXN--PTGR1	2	0	TXN	1229	chr9:113018692:-	PTGR1	14662	chr9:114348445:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	TXN->Oncogene{Bushman},chr9:113006091-113018920:-,thioredoxin,PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	A549_LUNG	1	1	0.0217	TRUE	0	0	0	3	0	TRUE	ACH-000681
A549_LUNG	YIPF6--BAZ1B	2	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	A549_LUNG	1	1	0.0217	TRUE	1	23	1	24	8	FALSE	ACH-000681
A549_LUNG	ZNF595--CHMP1A	2	0	ZNF595	2931	chr4:60046:+	CHMP1A	16209	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	ZNF595->chr4:53179-88099:+,zinc_finger_protein_595,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	A549_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000681
A549_LUNG	NRIP1--AF127936.7	1	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.23	1	0.0108	0.0217	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A549_LUNG	0.23	1	0.0325	FALSE	125	705	46	456	0	FALSE	ACH-000681
A549_LUNG	AC002066.1--TES	1	1	AC002066.1	1112	chr7:116139408:-	TES	13999	chr7:115874588:+	ONLY_REF_SPLICE	YES	6	223	0.25	0.01	0.0108	0.0108	NEIGHBORS_OVERLAP:-:+:[20523],AC002066.1->chr7:115878314-116139519:-,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	A549_LUNG	0.01	0.25	0.0216	FALSE	0	2	0	3	0	FALSE	ACH-000681
A549_LUNG	CPSF6--CNOT2	1	1	CPSF6	11046	chr12:69656342:+	CNOT2	49978	chr12:70747609:+	ONLY_REF_SPLICE	NO	267	131	0.01	0.02	0.0108	0.0108	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+	A549_LUNG	0.01	0.02	0.0216	FALSE	0	2	0	2	2	FALSE	ACH-000681
A549_LUNG	GPR126--VTA1	1	1	GPR126	2987	chr6:142630781:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	YES	197	185	0.01	0.01	0.0108	0.0108	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	A549_LUNG	0.01	0.01	0.0216	FALSE	0	2	0	15	1	FALSE	ACH-000681
A549_LUNG	HNRNPA2B1--C9orf3	1	1	HNRNPA2B1	1958	chr7:26240192:-	C9orf3	51379	chr9:97848964:+	ONLY_REF_SPLICE	YES	3811	1019	0	0	0.0108	0.0108	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	A549_LUNG	0	0	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000681
A549_LUNG	NCOR2--UBC	1	1	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	59	128	0.03	0.02	0.0108	0.0108	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	A549_LUNG	0.02	0.03	0.0216	TRUE	52	148	13	33	0	FALSE	ACH-000681
A549_LUNG	RHPN2--PABPC4	1	1	RHPN2	1105	chr19:33555690:-	PABPC4	29797	chr1:40031050:-	ONLY_REF_SPLICE	NO	16	455	0.11	0	0.0108	0.0108	RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2,PABPC4->chr1:40026488-40042462:-,poly(A)_binding_protein_cytoplasmic_4	A549_LUNG	0	0.11	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000681
A549_LUNG	SLTM--TCF12	1	1	SLTM	2298	chr15:59224555:-	TCF12	38387	chr15:57458600:+	ONLY_REF_SPLICE	YES	280	146	0.01	0.01	0.0108	0.0108	SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-,TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12	A549_LUNG	0.01	0.01	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000681
A549_LUNG	TPM2--ACTG1	1	1	TPM2	4592	chr9:35685061:-	ACTG1	14213	chr17:79478652:-	ONLY_REF_SPLICE	YES	2031	12106	0	0	0.0108	0.0108	GTEx&tcga_normals:114/3694=3.09%,GTEx:2.09%,GTEx_FI:{Blood_Vessel=[count:158=pct:42.8],Esophagus=[count:132=pct:32.6],Colon=[count:59=pct:30.9],Heart=[count:15=pct:6.0],Prostate=[count:9=pct:14.8],Stomach=[count:8=pct:9.0],Adipose_Tissue=[count:6=pct:2.0],Uterus=[count:4=pct:9.3],Small_Intestine=[count:3=pct:5.5],Vagina=[count:3=pct:5.5],Bladder=[count:2=pct:22.2],Lung=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Breast=[count:1=pct:0.9],_not_provided_=[count:1=pct:100.0],Fallopian_Tube=[count:1=pct:16.7],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=484;pct=5.59%;dist=Artery_-_Tibial=130,Esophagus_-_Muscularis=91,Esophagus_-_Gastroesophageal_Junction=56,Colon_-_Sigmoid=48,Artery_-_Coronary=29,Artery_-_Aorta=28,Colon_-_Transverse=23,Stomach=15,Adipose_-_Subcutaneous=13,Prostate=10,Uterus=8,Esophagus_-_Mucosa=6,Small_Intestine_-_Terminal_Ileum=5,Heart_-_Left_Ventricle=5,Heart_-_Atrial_Appendage=5,Breast_-_Mammary_Tissue=2,Vagina=2,Bladder=2,Ovary=1,Lung=1,Adipose_-_Visceral_(Omentum)=1,Muscle_-_Skeletal=1,Cells_-_Transformed_fibroblasts=1,Fallopian_Tube=1},TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),ACTG1->actin_gamma_1,chr17:79476997-79490873:-	A549_LUNG	0	0	0.0216	FALSE	237	57	25	9	0	FALSE	ACH-000681
YD15_SALIVARY_GLAND	EIF1--FTH1	9	0	EIF1	1112	chr17:39845248:+	FTH1	7999	chr11:61734918:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1921	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	YD15_SALIVARY_GLAND	1	1	0.1921	TRUE	0	0	0	2	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	CEP164--NCL	6	0	CEP164	23919	chr11:117261845:+	NCL	50472	chr2:232319980:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1281	0	CEP164->centrosomal_protein_164,chr11:117185273-117283984:+,NCL->chr2:232318242-232348352:-,nucleolin	YD15_SALIVARY_GLAND	1	1	0.1281	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	FAF2--CLIP1	4	0	FAF2	10282	chr5:175923664:+	CLIP1	32293	chr12:122837333:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0854	0	FAF2->Fas_associated_factor_family_member_2,chr5:175874629-175937075:+,CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-	YD15_SALIVARY_GLAND	1	1	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	LGMN--CLSTN1	4	0	LGMN	8720	chr14:93183725:-	CLSTN1	35693	chr1:9794129:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0854	0	LGMN->chr14:93170152-93215047:-,legumain,CLSTN1->calsyntenin_1,chr1:9789084-9884584:-	YD15_SALIVARY_GLAND	1	1	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	ANXA2P2--CTD-2192J16.22	3	0	ANXA2P2	1402	chr9:33624624:+	CTD-2192J16.22	8221	chr19:12754755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	ANXA2P2->annexin_A2_pseudogene_2,chr9:33624223-33625532:+,CTD-2192J16.22->chr19:12754645-12759211:-	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	ATP2C1--DNMT1	3	0	ATP2C1	16803	chr3:130678185:+	DNMT1	54568	chr19:10277361:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.064	0	ATP2C1->ATPase_secretory_pathway_Ca2+_transporting_1,chr3:130569439-130735556:+,DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	CITED4--NANS	3	0	CITED4	1163	chr1:41327856:-	NANS	5406	chr9:100819136:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	CITED4->Cbp/p300_interacting_transactivator_with_Glu/Asp_rich_carboxy-terminal_domain_4,Oncogene{Bushman},chr1:41326729-41328018:-,NANS->N-acetylneuraminate_synthase,chr9:100819021-100845357:+	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	FLCN--CYB5D2	3	0	FLCN	7335	chr17:17129546:-	CYB5D2	23542	chr17:4046675:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	FLCN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:17115526-17140502:-,folliculin,CYB5D2->chr17:4046462-4090605:+,cytochrome_b5_domain_containing_2	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	MOGS--ACTG1	3	0	MOGS	1097	chr2:74692441:-	ACTG1	11169	chr17:79479386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.064	0	MOGS->chr2:74688184-74692537:-,mannosyl-oligosaccharide_glucosidase,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	PHGDH--PKM	3	0	PHGDH	9819	chr1:120269725:+	PKM	41953	chr15:72491858:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	PHGDH->chr1:120202421-120286838:+,phosphoglycerate_dehydrogenase,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	POLM--C14orf80	3	0	POLM	9697	chr7:44112626:-	C14orf80	21378	chr14:105964192:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	POLM->chr7:44111846-44122139:-,polymerase_(DNA)_mu,C14orf80->chr14:105956192-105965912:+,chromosome_14_open_reading_frame_80	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	RGS19--UBC	3	0	RGS19	5008	chr20:62704994:-	UBC	11613	chr12:125397903:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	RGS19->Oncogene{Bushman},chr20:62704534-62711323:-,regulator_of_G-protein_signaling_19,UBC->chr12:125396150-125401914:-,ubiquitin_C	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	SP1--YWHAZ	3	0	SP1	5483	chr12:53800404:+	YWHAZ	20542	chr8:101960906:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	SP1->Sp1_transcription_factor,chr12:53773960-53810230:+,YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	USP22--TRIM25	3	0	USP22	16408	chr17:20906268:-	TRIM25	36003	chr17:54965828:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	USP22->chr17:20902910-20947073:-,ubiquitin_specific_peptidase_22,TRIM25->chr17:54965270-54991399:-,tripartite_motif_containing_25	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	VPS52--C18orf25	3	0	VPS52	11112	chr6:33218545:-	C18orf25	20816	chr18:43843229:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	VPS52->VPS52,_GARP_complex_subunit,chr6:33218049-33239824:-,C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25	YD15_SALIVARY_GLAND	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	ACYP1--THAP4	2	0	ACYP1	2370	chr14:75530657:-	THAP4	14996	chr2:242545888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	ACYP1->acylphosphatase_1,chr14:75519924-75536186:-,THAP4->THAP_domain_containing_4,chr2:242523820-242576864:-	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	BABAM1--SFI1	2	0	BABAM1	1178	chr19:17378336:+	SFI1	45460	chr22:32009128:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	BABAM1->BRISC_and_BRCA1_A_complex_member_1,chr19:17378159-17392058:+,SFI1->SFI1_centrin_binding_protein,chr22:31884674-32014572:+	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	BCAR3--RP11-488P3.1	2	0	BCAR3	8673	chr1:94140170:-	RP11-488P3.1	30475	chr1:94219902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	NEIGHBORS_OVERLAP:-:-:[22520],BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,RP11-488P3.1->chr1:94218480-94241000:-	YD15_SALIVARY_GLAND	1	1	0.0427	FALSE	0	0	0	3	0	FALSE	ACH-000836
YD15_SALIVARY_GLAND	GMPS--UGP2	2	0	GMPS	1362	chr3:155588686:+	UGP2	33336	chr2:64083440:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	GMPS->Oncogene{Bushman},chr3:155588325-155661815:+,guanine_monophosphate_synthase,UGP2->UDP-glucose_pyrophosphorylase_2,chr2:64068074-64118696:+	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	HIF1A--RP11-47I22.3	2	0	HIF1A	1327	chr14:62162557:+	RP11-47I22.3	28952	chr14:62124323:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	3	0	1	3	TRUE	ACH-000836
YD15_SALIVARY_GLAND	INPP4B--MRPS6	2	0	INPP4B	26437	chr4:143324091:-	MRPS6	62739	chr21:35475134:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	LAMC1--HMGN3	2	0	LAMC1	16274	chr1:183096539:+	HMGN3	38720	chr6:79911443:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	LAMC1->chr1:182992595-183114727:+,laminin_subunit_gamma_1,HMGN3->chr6:79910962-79944406:-,high_mobility_group_nucleosomal_binding_domain_3	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	LRBA--CCNB2	2	0	LRBA	55567	chr4:151336590:-	CCNB2	74512	chr15:59399756:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,CCNB2->chr15:59397277-59417244:+,cyclin_B2	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	OIP5--NUSAP1	2	0	OIP5	1707	chr15:41624113:-	NUSAP1	19019	chr15:41663725:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_INVERSION:-:+:[73],OIP5->Opa_interacting_protein_5,chr15:41601466-41624819:-,NUSAP1->chr15:41624892-41673248:+,nucleolar_and_spindle_associated_protein_1	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	SEC61B--RTEL1	2	0	SEC61B	1303	chr9:101984648:+	RTEL1	21800	chr20:62316876:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	SEC61B->Sec61_translocon_beta_subunit,chr9:101984346-101992897:+,RTEL1->chr20:62289163-62328416:+,regulator_of_telomere_elongation_helicase_1	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	UBE2I--RP11-1035H13.3	2	0	UBE2I	4725	chr16:1359272:+	RP11-1035H13.3	26374	chr16:18800440:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I,RP11-1035H13.3->chr16:18799385-18812841:-	YD15_SALIVARY_GLAND	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000836
YD15_SALIVARY_GLAND	IPO7--SLC22A18AS	1	1	IPO7	1226	chr11:9406394:+	SLC22A18AS	35727	chr11:2909865:-	ONLY_REF_SPLICE	YES	7	1	0.22	0.67	0.0213	0.0213	IPO7->chr11:9406169-9469673:+,importin_7,SLC22A18AS->chr11:2909010-2924970:-,solute_carrier_family_22_member_18_antisense	YD15_SALIVARY_GLAND	0.22	0.67	0.0426	TRUE	0	0	0	2	0	TRUE	ACH-000836
SKNBE2_AUTONOMIC_GANGLIA	MELK--P4HA1	157	40	MELK	14843	chr9:36651874:+	P4HA1	39782	chr10:74774047:-	ONLY_REF_SPLICE	YES	57	18	0.78	0.92	1.4772	0.3764	MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,P4HA1->chr10:74766975-74856732:-,prolyl_4-hydroxylase_subunit_alpha_1	SKNBE2_AUTONOMIC_GANGLIA	0.78	0.92	1.8536	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	154	36	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.449	0.3387	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKNBE2_AUTONOMIC_GANGLIA	0.99	1	1.7877	TRUE	508	994	45	981	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MLLT10--AC130710.1	128	39	MLLT10	21051	chr10:21971186:+	AC130710.1	40167	chr2:16221020:+	ONLY_REF_SPLICE	YES	34	3	0.83	0.98	1.2044	0.367	MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,AC130710.1->chr2:16190549-16225923:+	SKNBE2_AUTONOMIC_GANGLIA	0.83	0.98	1.5714	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	TTC3--B3GALT5	127	33	TTC3	48861	chr21:38545046:+	B3GALT5	72859	chr21:41031680:+	ONLY_REF_SPLICE	YES	146	4	0.52	0.98	1.195	0.3105	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,B3GALT5->beta-1,3-galactosyltransferase_5,chr21:40928369-41045064:+	SKNBE2_AUTONOMIC_GANGLIA	0.52	0.98	1.5055	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	ZNF654--HMGB2	108	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0162	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKNBE2_AUTONOMIC_GANGLIA	1	1	1.0162	TRUE	0	0	0	518	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	77	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	268	6	0.23	0.93	0.7245	0.0282	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKNBE2_AUTONOMIC_GANGLIA	0.23	0.93	0.7527	TRUE	519	3926	326	965	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	53	12	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	18	1	0.78	0.4987	0.1129	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKNBE2_AUTONOMIC_GANGLIA	0.78	1	0.6116	TRUE	458	1351	185	561	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-TA--MT-TC	52	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4893	0.0659	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.5552	FALSE	462	80	0	856	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	42	18	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	62	0	0.49	1	0.3952	0.1694	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKNBE2_AUTONOMIC_GANGLIA	0.49	1	0.5646	FALSE	21	45	1	60	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	36	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	181	1	0.18	0.3387	0.0376	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKNBE2_AUTONOMIC_GANGLIA	0.18	1	0.3763	TRUE	465	1949	224	605	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	26	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2446	0.0376	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNBE2_AUTONOMIC_GANGLIA	0.97	1	0.2822	FALSE	499	1288	110	792	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	11	45	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	7	0.95	0.89	0.1035	0.4234	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKNBE2_AUTONOMIC_GANGLIA	0.89	0.95	0.5269	FALSE	189	492	56	216	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	P4HA1--MELK	20	2	P4HA1	14691	chr10:74776604:-	MELK	38010	chr9:36657238:+	ONLY_REF_SPLICE	YES	19	55	0.54	0.29	0.1882	0.0188	P4HA1->chr10:74766975-74856732:-,prolyl_4-hydroxylase_subunit_alpha_1,MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase	SKNBE2_AUTONOMIC_GANGLIA	0.29	0.54	0.207	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	7	46	MT-CO3	1575	chrM:9781:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	7	0.98	0.88	0.0659	0.4328	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKNBE2_AUTONOMIC_GANGLIA	0.88	0.98	0.4987	FALSE	189	492	56	216	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	15	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	212	0	0.09	1	0.1411	0.047	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKNBE2_AUTONOMIC_GANGLIA	0.09	1	0.1881	FALSE	56	216	12	147	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	15	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2882	0	0.01	1	0.1411	0.0188	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKNBE2_AUTONOMIC_GANGLIA	0.01	1	0.1599	FALSE	13	9	0	364	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	15	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2863	0	0.01	1	0.1411	0.0188	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKNBE2_AUTONOMIC_GANGLIA	0.01	1	0.1599	FALSE	13	9	0	364	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	3	48	MT-CO3	1220	chrM:9426:+	MT-ATP6	4919	chrM:8661:+	INCL_NON_REF_SPLICE	NO	4	15	0.93	0.77	0.0282	0.4516	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKNBE2_AUTONOMIC_GANGLIA	0.77	0.93	0.4798	FALSE	189	492	56	216	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	NPM1P24--SET	12	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	52	1351	0.2	0.01	0.1129	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNBE2_AUTONOMIC_GANGLIA	0.01	0.2	0.1223	TRUE	0	0	0	434	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	7	21	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	12267	chr5:120116913:+	INCL_NON_REF_SPLICE	YES	62	0	0.31	1	0.0659	0.1976	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKNBE2_AUTONOMIC_GANGLIA	0.31	1	0.2635	FALSE	1	2	0	4	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-TA--MT-TC	10	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0941	0.0659	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.16	FALSE	462	80	0	856	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	4	25	MT-CO3	1036	chrM:9242:+	MT-ATP6	4744	chrM:8486:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0.2352	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.2728	FALSE	189	492	56	216	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	8	7	PRR16	8644	chr5:120022405:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	93	0	0.14	1	0.0753	0.0659	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKNBE2_AUTONOMIC_GANGLIA	0.14	1	0.1412	FALSE	21	45	1	60	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-TA--MT-TC	9	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0847	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0941	FALSE	462	80	0	856	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	EEF2--RPS28	9	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0847	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0847	TRUE	0	0	0	100	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	AC010745.2--AC142119.1	7	7	AC010745.2	1165	chr2:16405479:+	AC142119.1	6581	chr2:16245665:-	ONLY_REF_SPLICE	YES	76	1	0.16	0.93	0.0659	0.0659	AC010745.2->chr2:16405315-16410408:+,AC142119.1->chr2:16225344-16245963:-	SKNBE2_AUTONOMIC_GANGLIA	0.16	0.93	0.1318	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	6	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0565	0.1035	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNBE2_AUTONOMIC_GANGLIA	0.94	1	0.16	FALSE	499	1288	110	792	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	4	17	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0376	0.16	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNBE2_AUTONOMIC_GANGLIA	0.95	1	0.1976	FALSE	499	1288	110	792	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	NPM1P24--SET	8	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	52	1225	0.15	0.01	0.0753	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNBE2_AUTONOMIC_GANGLIA	0.01	0.15	0.0847	FALSE	0	0	0	434	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	8	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.29	1	0.0753	0.0094	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKNBE2_AUTONOMIC_GANGLIA	0.29	1	0.0847	FALSE	125	705	46	456	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	5	12	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.047	0.1129	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.1599	FALSE	189	492	56	216	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	7	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0659	0.0376	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNBE2_AUTONOMIC_GANGLIA	0.92	1	0.1035	FALSE	499	1288	110	792	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-TA--MT-TC	6	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0.0659	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.1224	FALSE	462	80	0	856	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	6	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	25	0	0.26	1	0.0565	0.0282	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKNBE2_AUTONOMIC_GANGLIA	0.26	1	0.0847	FALSE	164	806	69	479	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	4	10	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0.0941	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.1317	FALSE	189	492	56	216	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	6	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.0565	0.0188	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKNBE2_AUTONOMIC_GANGLIA	0.73	1	0.0753	FALSE	189	492	56	216	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	RP4-565E6.1--HYDIN	6	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0565	0.0188	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0753	TRUE	456	1387	91	133	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	KLHL3--SPOCK1	6	1	KLHL3	30410	chr5:136955290:-	SPOCK1	42362	chr5:136602744:-	INCL_NON_REF_SPLICE	YES	7	20	0.5	0.26	0.0565	0.0094	NEIGHBORS[19121],KLHL3->chr5:136953189-137071779:-,kelch_like_family_member_3,SPOCK1->chr5:136310987-136934068:-,sparc/osteonectin,_cwcv_and_kazal-like_domains_proteoglycan_(testican)_1	SKNBE2_AUTONOMIC_GANGLIA	0.26	0.5	0.0659	FALSE	0	2	0	2	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	NPM1P24--SET	6	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	52	1215	0.12	0.01	0.0565	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNBE2_AUTONOMIC_GANGLIA	0.01	0.12	0.0659	FALSE	0	0	0	434	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	6	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0565	FALSE	189	492	56	216	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	6	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0565	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0565	TRUE	477	1352	189	275	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	4	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	212	0	0.04	1	0.0376	0.047	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKNBE2_AUTONOMIC_GANGLIA	0.04	1	0.0846	FALSE	1	13	0	24	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	4	4	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	5	0	0.62	1	0.0376	0.0376	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKNBE2_AUTONOMIC_GANGLIA	0.62	1	0.0752	FALSE	189	492	56	216	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	CPSF6--C9orf3	4	2	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	195	245	0.03	0.02	0.0376	0.0188	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SKNBE2_AUTONOMIC_GANGLIA	0.02	0.03	0.0564	TRUE	53	99	2	44	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	NPM1P24--SET	4	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	52	1321	0.09	0	0.0376	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNBE2_AUTONOMIC_GANGLIA	0	0.09	0.047	FALSE	0	0	0	434	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.45	1	0.0376	0.0094	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKNBE2_AUTONOMIC_GANGLIA	0.45	1	0.047	FALSE	292	1546	117	613	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	AC010745.2--AC142119.1	2	8	AC010745.2	2289	chr2:16409415:+	AC142119.1	6581	chr2:16245665:-	ONLY_REF_SPLICE	YES	61	1	0.14	0.91	0.0188	0.0753	AC010745.2->chr2:16405315-16410408:+,AC142119.1->chr2:16225344-16245963:-	SKNBE2_AUTONOMIC_GANGLIA	0.14	0.91	0.0941	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0376	FALSE	183	104	9	328	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	TTC3--B3GALT5	4	0	TTC3	48861	chr21:38545046:+	B3GALT5	76609	chr21:41035430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,B3GALT5->beta-1,3-galactosyltransferase_5,chr21:40928369-41045064:+	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	3	2	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2702	16538	0	0	0.0282	0.0188	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKNBE2_AUTONOMIC_GANGLIA	0	0	0.047	FALSE	183	104	9	328	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	3	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0282	FALSE	183	104	9	328	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0282	FALSE	183	104	9	328	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	3	0	MT-ATP6	1121	chrM:8647:+	MT-CO1	4698	chrM:5920:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0282	FALSE	182	97	9	327	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	3	0	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0282	FALSE	189	492	56	216	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	0	MT-ND6	1025	chrM:14649:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0282	FALSE	499	1288	110	792	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	MYCN--ATF4	3	0	MYCN	2307	chr2:16082196:+	ATF4	9542	chr22:39916639:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	MYCN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:16080686-16087129:+,v-myc_avian_myelocytomatosis_viral_oncogene_neuroblastoma_derived_homolog,ATF4->Oncogene{Bushman},activating_transcription_factor_4,chr22:39915700-39918691:+	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	1	5	PRR16	4658	chr5:119867257:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	223	0	0.03	1	0.0094	0.047	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKNBE2_AUTONOMIC_GANGLIA	0.03	1	0.0564	FALSE	0	0	0	1	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	AC019118.2--TRAPPC12	2	0	AC019118.2	1732	chr2:3129067:-	TRAPPC12	17818	chr2:3447550:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	AC019118.2->chr2:2898820-3129798:-,TRAPPC12->chr2:3383446-3488865:+,trafficking_protein_particle_complex_12	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	C2orf42--NDUFB2	2	0	C2orf42	1211	chr2:70475537:-	NDUFB2	23646	chr7:140402666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	TSHZ2--RP4-723E3.1	2	0	TSHZ2	1927	chr20:51589872:+	RP4-723E3.1	23918	chr20:51147427:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	TSHZ2->chr20:51588946-52111869:+,teashirt_zinc_finger_homeobox_2,RP4-723E3.1->chr20:50827184-51266970:+	SKNBE2_AUTONOMIC_GANGLIA	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0094	0.0188	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKNBE2_AUTONOMIC_GANGLIA	0.75	1	0.0282	TRUE	62	24	1	171	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	AC010745.2--AC142119.1	1	1	AC010745.2	1165	chr2:16405479:+	AC142119.1	7710	chr2:16237584:-	ONLY_REF_SPLICE	YES	76	7	0.03	0.22	0.0094	0.0094	AC010745.2->chr2:16405315-16410408:+,AC142119.1->chr2:16225344-16245963:-	SKNBE2_AUTONOMIC_GANGLIA	0.03	0.22	0.0188	TRUE	0	0	0	1	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	BPTF--MYCN	1	1	BPTF	40135	chr17:65972074:+	MYCN	50166	chr2:16085615:+	ONLY_REF_SPLICE	YES	75	1401	0.03	0	0.0094	0.0094	BPTF->bromodomain_PHD_finger_transcription_factor,chr17:65821640-65980494:+,MYCN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:16080686-16087129:+,v-myc_avian_myelocytomatosis_viral_oncogene_neuroblastoma_derived_homolog	SKNBE2_AUTONOMIC_GANGLIA	0	0.03	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	FGF14-IT1--FGF14	1	1	FGF14-IT1	3717	chr13:103018795:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	5	1	0.29	0.0094	0.0094	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	SKNBE2_AUTONOMIC_GANGLIA	0.29	1	0.0188	TRUE	80	58	2	10	0	FALSE	ACH-000312
SKNBE2_AUTONOMIC_GANGLIA	LDLRAD3--PRR5L	1	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	20830	chr11:36350668:+	ONLY_REF_SPLICE	YES	41	0	0.05	1	0.0094	0.0094	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	SKNBE2_AUTONOMIC_GANGLIA	0.05	1	0.0188	FALSE	2	24	3	12	0	FALSE	ACH-000312
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--CD68	1147	11	RP11-1143G9.4	1649	chr12:69747357:-	CD68	7122	chr17:7485173:+	INCL_NON_REF_SPLICE	YES	25	642	0.98	0.64	10.5962	0.1016	RP11-1143G9.4->chr12:69747273-69748005:-,CD68->CD68_molecule,chr17:7482785-7485429:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.98	10.6978	TRUE	0	0	0	1	0	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--SAMHD1	769	21	RP11-1143G9.4	1655	chr12:69747351:-	SAMHD1	22156	chr20:35520172:-	INCL_NON_REF_SPLICE	YES	22	450	0.97	0.64	7.1042	0.194	RP11-1143G9.4->chr12:69747273-69748005:-,SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.97	7.2982	TRUE	0	0	0	1	0	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--CD68	552	2	RP11-1143G9.4	1692	chr12:69747314:-	CD68	7184	chr17:7485235:+	INCL_NON_REF_SPLICE	YES	1	72	1	0.88	5.0995	0.0185	RP11-1143G9.4->chr12:69747273-69748005:-,CD68->CD68_molecule,chr17:7482785-7485429:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	5.118	TRUE	0	0	0	1	0	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--SAMHD1	506	4	RP11-1143G9.4	1565	chr12:69747441:-	SAMHD1	23275	chr20:35519053:-	INCL_NON_REF_SPLICE	NO	5918	382	0.08	0.57	4.6745	0.037	RP11-1143G9.4->chr12:69747273-69748005:-,SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.57	4.7115	TRUE	0	0	0	1	0	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	234	3	PTMA	6054	chr2:232576687:+	HMGB2	13627	chr4:174253268:-	INCL_NON_REF_SPLICE	YES	4286	1583	0.05	0.13	2.1617	0.0277	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.13	2.1894	TRUE	0	0	0	4	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPT2--RP11-1143G9.4	163	0	CPT2	8129	chr1:53679597:+	RP11-1143G9.4	12119	chr12:69747288:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5058	0	GTEx_FI:{Salivary_Gland=[count:7=pct:17.9]},CPT2->carnitine_palmitoyltransferase_2,chr1:53662101-53679869:+,RP11-1143G9.4->chr12:69747273-69748005:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.5058	TRUE	7	0	0	2	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--CD68	113	18	RP11-1143G9.4	1505	chr12:69747501:-	CD68	6976	chr17:7485027:+	INCL_NON_REF_SPLICE	YES	6924	1011	0.02	0.11	1.0439	0.1663	RP11-1143G9.4->chr12:69747273-69748005:-,CD68->CD68_molecule,chr17:7482785-7485429:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.11	1.2102	TRUE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	92	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8499	0.157	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0069	TRUE	508	994	45	981	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC11A--PTMA	78	3	CLEC11A	1693	chr19:51227278:+	PTMA	11398	chr2:232576642:+	INCL_NON_REF_SPLICE	NO	1633	4261	0.05	0.02	0.7206	0.0277	CLEC11A->C-type_lectin_domain_family_11_member_A,chr19:51226586-51228974:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.7483	TRUE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--CD68	68	19	RP11-1143G9.4	1525	chr12:69747481:-	CD68	6996	chr17:7485047:+	INCL_NON_REF_SPLICE	YES	7259	927	0.01	0.09	0.6282	0.1755	RP11-1143G9.4->chr12:69747273-69748005:-,CD68->CD68_molecule,chr17:7482785-7485429:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.09	0.8037	TRUE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	57	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	184	6	0.24	0.91	0.5266	0.0092	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.91	0.5358	TRUE	519	3926	326	965	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--CD68	50	12	RP11-1143G9.4	1489	chr12:69747517:-	CD68	6958	chr17:7485009:+	INCL_NON_REF_SPLICE	YES	6405	874	0.01	0.07	0.4619	0.1109	RP11-1143G9.4->chr12:69747273-69748005:-,CD68->CD68_molecule,chr17:7482785-7485429:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.07	0.5728	TRUE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	44	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4065	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4065	FALSE	369	2501	205	193	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	39	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3603	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3603	TRUE	0	0	0	518	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--SAMHD1	32	21	RP11-1143G9.4	1649	chr12:69747357:-	SAMHD1	22150	chr20:35520178:-	INCL_NON_REF_SPLICE	YES	25	457	0.68	0.1	0.2956	0.194	RP11-1143G9.4->chr12:69747273-69748005:-,SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.68	0.4896	TRUE	0	0	0	1	0	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC11A--PTMA	36	3	CLEC11A	1695	chr19:51227280:+	PTMA	10824	chr2:232576068:+	INCL_NON_REF_SPLICE	NO	1613	4858	0.02	0.01	0.3326	0.0277	CLEC11A->C-type_lectin_domain_family_11_member_A,chr19:51226586-51228974:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.3603	FALSE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	32	17	KMT2A	17776	chr11:118355029:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	5	0	0.91	1	0.2956	0.157	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.4526	TRUE	0	0	0	4	0	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--SAMHD1	32	7	RP11-1143G9.4	1489	chr12:69747517:-	SAMHD1	23199	chr20:35519129:-	INCL_NON_REF_SPLICE	YES	7058	630	0.01	0.06	0.2956	0.0647	RP11-1143G9.4->chr12:69747273-69748005:-,SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.3603	TRUE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC11A--PTMA	31	3	CLEC11A	1696	chr19:51227281:+	PTMA	11398	chr2:232576642:+	INCL_NON_REF_SPLICE	NO	1635	4261	0.02	0.01	0.2864	0.0277	CLEC11A->C-type_lectin_domain_family_11_member_A,chr19:51226586-51228974:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.3141	FALSE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPT2--RP11-1143G9.4	31	0	CPT2	8130	chr1:53679598:+	RP11-1143G9.4	12119	chr12:69747288:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2864	0	GTEx_FI:{Salivary_Gland=[count:7=pct:17.9]},CPT2->carnitine_palmitoyltransferase_2,chr1:53662101-53679869:+,RP11-1143G9.4->chr12:69747273-69748005:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2864	TRUE	7	0	0	2	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	26	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2402	0.0739	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3141	FALSE	462	80	0	856	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	26	7	PTMA	6556	chr2:232577189:+	HMGB2	13573	chr4:174253322:-	INCL_NON_REF_SPLICE	YES	3483	1961	0.01	0.02	0.2402	0.0647	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.3049	TRUE	0	0	0	4	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC11A--PTMA	26	3	CLEC11A	1690	chr19:51227275:+	PTMA	11404	chr2:232576648:+	INCL_NON_REF_SPLICE	NO	1626	4317	0.02	0.01	0.2402	0.0277	CLEC11A->C-type_lectin_domain_family_11_member_A,chr19:51226586-51228974:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.2679	FALSE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPT2--RP11-1143G9.4	24	0	CPT2	8128	chr1:53679596:+	RP11-1143G9.4	12119	chr12:69747288:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2217	0	GTEx_FI:{Salivary_Gland=[count:7=pct:17.9]},CPT2->carnitine_palmitoyltransferase_2,chr1:53662101-53679869:+,RP11-1143G9.4->chr12:69747273-69748005:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2217	TRUE	7	0	0	2	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	10	54	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0924	0.4989	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5913	FALSE	369	2501	205	193	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	19	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1755	0.1478	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.3233	FALSE	499	1288	110	792	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	21	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.194	0.0185	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2125	FALSE	499	1288	110	792	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	20	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1848	0.0462	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.231	FALSE	416	2512	207	587	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	11	36	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1016	0.3326	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4342	FALSE	369	2501	205	193	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	11	30	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1016	0.2771	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3787	FALSE	369	2501	205	193	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	18	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1663	0.0185	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1848	TRUE	477	1352	189	275	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPT2--RP11-1143G9.4	17	0	CPT2	8140	chr1:53679608:+	RP11-1143G9.4	12119	chr12:69747288:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.157	0	GTEx_FI:{Salivary_Gland=[count:7=pct:17.9]},CPT2->carnitine_palmitoyltransferase_2,chr1:53662101-53679869:+,RP11-1143G9.4->chr12:69747273-69748005:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.157	TRUE	7	0	0	2	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC11A--PTMA	15	3	CLEC11A	1696	chr19:51227281:+	PTMA	11374	chr2:232576618:+	INCL_NON_REF_SPLICE	NO	1635	4583	0.01	0	0.1386	0.0277	CLEC11A->C-type_lectin_domain_family_11_member_A,chr19:51226586-51228974:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1663	FALSE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--SAMHD1	14	6	RP11-1143G9.4	1525	chr12:69747481:-	SAMHD1	23236	chr20:35519092:-	INCL_NON_REF_SPLICE	YES	8061	598	0	0.03	0.1293	0.0554	RP11-1143G9.4->chr12:69747273-69748005:-,SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.1847	TRUE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	14	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1293	0.0185	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1478	FALSE	499	1288	110	792	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	14	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1293	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1293	FALSE	369	2501	205	193	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	13	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1201	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1201	FALSE	230	198	14	283	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	11	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1016	0.0647	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1663	FALSE	462	80	0	856	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--CD68	9	15	RP11-1143G9.4	1536	chr12:69747470:-	CD68	7007	chr17:7485058:+	INCL_NON_REF_SPLICE	YES	6493	982	0	0.02	0.0831	0.1386	RP11-1143G9.4->chr12:69747273-69748005:-,CD68->CD68_molecule,chr17:7482785-7485429:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.2217	TRUE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC11A--PTMA	11	3	CLEC11A	1692	chr19:51227277:+	PTMA	10856	chr2:232576100:+	INCL_NON_REF_SPLICE	YES	1621	4550	0.01	0	0.1016	0.0277	CLEC11A->C-type_lectin_domain_family_11_member_A,chr19:51226586-51228974:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1293	TRUE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--SAMHD1	11	1	RP11-1143G9.4	1649	chr12:69747357:-	SAMHD1	23373	chr20:35518955:-	INCL_NON_REF_SPLICE	YES	25	303	0.32	0.04	0.1016	0.0092	RP11-1143G9.4->chr12:69747273-69748005:-,SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.32	0.1108	TRUE	0	0	0	1	0	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	9	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.0831	0.0647	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1478	FALSE	515	4851	409	746	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	9	5	MT-ND4	2053	chrM:11812:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11939	60	0	0.19	0.0831	0.0462	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.19	0.1293	FALSE	231	215	16	283	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	8	9	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0739	0.0831	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.157	FALSE	369	2501	205	193	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPT2--RP11-1143G9.4	10	0	CPT2	8131	chr1:53679599:+	RP11-1143G9.4	12119	chr12:69747288:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0924	0	GTEx_FI:{Salivary_Gland=[count:7=pct:17.9]},CPT2->carnitine_palmitoyltransferase_2,chr1:53662101-53679869:+,RP11-1143G9.4->chr12:69747273-69748005:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0924	TRUE	7	0	0	2	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	10	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0924	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0924	FALSE	369	2501	205	193	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC11A--PTMA	9	3	CLEC11A	1696	chr19:51227281:+	PTMA	11407	chr2:232576651:+	INCL_NON_REF_SPLICE	NO	1635	4110	0.01	0	0.0831	0.0277	CLEC11A->C-type_lectin_domain_family_11_member_A,chr19:51226586-51228974:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1108	FALSE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC11A--PTMA	9	3	CLEC11A	1675	chr19:51227260:+	PTMA	11416	chr2:232576660:+	INCL_NON_REF_SPLICE	YES	1547	3976	0.01	0	0.0831	0.0277	CLEC11A->C-type_lectin_domain_family_11_member_A,chr19:51226586-51228974:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1108	TRUE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	15	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0.1386	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.194	FALSE	369	2501	205	193	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPT2--RP11-1143G9.4	9	0	CPT2	8139	chr1:53679607:+	RP11-1143G9.4	12119	chr12:69747288:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0831	0	GTEx_FI:{Salivary_Gland=[count:7=pct:17.9]},CPT2->carnitine_palmitoyltransferase_2,chr1:53662101-53679869:+,RP11-1143G9.4->chr12:69747273-69748005:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0831	TRUE	7	0	0	2	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPT2--RP11-1143G9.4	9	0	CPT2	8138	chr1:53679606:+	RP11-1143G9.4	12119	chr12:69747288:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0831	0	GTEx_FI:{Salivary_Gland=[count:7=pct:17.9]},CPT2->carnitine_palmitoyltransferase_2,chr1:53662101-53679869:+,RP11-1143G9.4->chr12:69747273-69748005:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0831	TRUE	7	0	0	2	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	9	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0831	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0831	FALSE	369	2501	205	193	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	8	4	PTMA	6060	chr2:232576693:+	HMGB2	13600	chr4:174253295:-	INCL_NON_REF_SPLICE	YES	4645	1837	0	0.01	0.0739	0.037	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1109	TRUE	0	0	0	4	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC11A--PTMA	8	3	CLEC11A	1696	chr19:51227281:+	PTMA	11371	chr2:232576615:+	INCL_NON_REF_SPLICE	NO	1635	4597	0.01	0	0.0739	0.0277	CLEC11A->C-type_lectin_domain_family_11_member_A,chr19:51226586-51228974:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1016	FALSE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	5	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13257	5	0	0.71	0.0647	0.0462	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.71	0.1109	FALSE	231	217	16	283	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPT2--RP11-1143G9.4	8	0	CPT2	8137	chr1:53679605:+	RP11-1143G9.4	12119	chr12:69747288:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0739	0	GTEx_FI:{Salivary_Gland=[count:7=pct:17.9]},CPT2->carnitine_palmitoyltransferase_2,chr1:53662101-53679869:+,RP11-1143G9.4->chr12:69747273-69748005:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0739	TRUE	7	0	0	2	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	6	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.0554	0.0647	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	0.1201	FALSE	407	2205	196	549	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0.1201	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1571	FALSE	499	1288	110	792	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	5	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0462	0.0831	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1293	FALSE	467	2173	244	435	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0647	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0647	FALSE	231	205	14	283	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	7	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0647	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0647	FALSE	369	2501	205	193	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC11A--PTMA	6	3	CLEC11A	1696	chr19:51227281:+	PTMA	10829	chr2:232576073:+	INCL_NON_REF_SPLICE	NO	1635	4735	0.01	0	0.0554	0.0277	CLEC11A->C-type_lectin_domain_family_11_member_A,chr19:51226586-51228974:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0831	FALSE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	15	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0.1386	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1663	FALSE	499	1288	110	792	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--SAMHD1	5	7	RP11-1143G9.4	1449	chr12:69747557:-	SAMHD1	23160	chr20:35519168:-	INCL_NON_REF_SPLICE	YES	7068	609	0	0.02	0.0462	0.0647	RP11-1143G9.4->chr12:69747273-69748005:-,SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.1109	TRUE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	6	2	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0.0185	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0739	TRUE	0	1	0	84	1	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	6	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0.0185	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0739	TRUE	0	1	0	84	1	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	6	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2230	60	0	0.15	0.0462	0.0554	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.15	0.1016	FALSE	216	209	16	281	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	5	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4514	60	0	0.14	0.0462	0.0462	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.14	0.0924	FALSE	218	210	16	281	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	5	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	6716	525	0	0.02	0.0462	0.0462	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0924	FALSE	231	215	16	283	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	6	0	PTMA	6535	chr2:232577168:+	HMGB2	13652	chr4:174253243:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0554	TRUE	0	0	0	4	0	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	5	4	PTMA	6060	chr2:232576693:+	HMGB2	13543	chr4:174253352:-	INCL_NON_REF_SPLICE	NO	4645	1979	0	0	0.0462	0.037	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0832	FALSE	0	0	0	4	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0554	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0554	TRUE	465	1949	224	605	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC11A--PTMA	5	3	CLEC11A	1695	chr19:51227280:+	PTMA	10849	chr2:232576093:+	INCL_NON_REF_SPLICE	NO	1613	4304	0	0	0.0462	0.0277	CLEC11A->C-type_lectin_domain_family_11_member_A,chr19:51226586-51228974:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0739	FALSE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-TG	5	1	MT-ND3	1063	chrM:10121:+	MT-TG	4390	chrM:10034:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0.0092	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0554	FALSE	97	9	0	14	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPT2--RP11-1143G9.4	5	0	CPT2	8141	chr1:53679609:+	RP11-1143G9.4	12118	chr12:69747289:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0	GTEx_FI:{Salivary_Gland=[count:7=pct:17.9]},CPT2->carnitine_palmitoyltransferase_2,chr1:53662101-53679869:+,RP11-1143G9.4->chr12:69747273-69748005:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0462	TRUE	7	0	0	2	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYZ--CCT2	5	0	LYZ	3682	chr12:69746078:+	CCT2	12770	chr12:69983265:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0462	0	LYZ->chr12:69742121-69748014:+,lysozyme,CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0462	TRUE	1	6	0	5	1	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	4	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	15662	773	0	0.01	0.037	0.037	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.074	FALSE	231	217	16	283	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	7	MT-ND4	2176	chrM:11935:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	6775	0	0	1	0.0277	0.0647	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0924	FALSE	231	215	16	283	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	14261	0	0	1	0.037	0.0277	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0647	FALSE	231	217	16	283	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	7	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0277	0.0647	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.0924	FALSE	499	1288	110	792	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	3	7	PTMA	6552	chr2:232577185:+	HMGB2	13568	chr4:174253327:-	INCL_NON_REF_SPLICE	YES	3668	1924	0	0.01	0.0277	0.0647	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0924	FALSE	0	0	0	4	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--CD68	3	5	RP11-1143G9.4	1683	chr12:69747323:-	CD68	7156	chr17:7485207:+	INCL_NON_REF_SPLICE	YES	2	258	0.8	0.03	0.0277	0.0462	RP11-1143G9.4->chr12:69747273-69748005:-,CD68->CD68_molecule,chr17:7482785-7485429:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.8	0.0739	TRUE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPT2--RP11-1143G9.4	4	0	CPT2	8141	chr1:53679609:+	RP11-1143G9.4	12119	chr12:69747288:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	GTEx_FI:{Salivary_Gland=[count:7=pct:17.9]},CPT2->carnitine_palmitoyltransferase_2,chr1:53662101-53679869:+,RP11-1143G9.4->chr12:69747273-69748005:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.037	TRUE	7	0	0	2	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	4	0	MT-ND3	1060	chrM:10118:+	MT-ATP8	4489	chrM:8508:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.037	FALSE	351	233	23	137	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	4	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.037	FALSE	351	233	23	137	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.037	FALSE	230	198	14	283	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	13305	1507	0	0	0.0277	0.037	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0647	FALSE	231	217	16	283	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.037	FALSE	231	204	14	283	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1058	chrM:5598:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.037	FALSE	369	2501	205	193	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YIPF6--BAZ1B	4	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.037	TRUE	1	23	1	24	8	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC11A--PTMA	3	3	CLEC11A	1690	chr19:51227275:+	PTMA	11395	chr2:232576639:+	INCL_NON_REF_SPLICE	NO	1626	4336	0	0	0.0277	0.0277	CLEC11A->C-type_lectin_domain_family_11_member_A,chr19:51226586-51228974:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0554	FALSE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC11A--PTMA	3	3	CLEC11A	1696	chr19:51227281:+	PTMA	10826	chr2:232576070:+	INCL_NON_REF_SPLICE	NO	1635	4800	0	0	0.0277	0.0277	CLEC11A->C-type_lectin_domain_family_11_member_A,chr19:51226586-51228974:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0554	FALSE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	14261	0	0	1	0.0277	0.0277	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0554	FALSE	231	217	16	283	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	3	MT-ND4	1515	chrM:11274:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15169	60	0	0.09	0.0277	0.0277	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0554	FALSE	231	217	16	283	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	2	MT-ND4	1471	chrM:11230:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13986	60	0	0.08	0.0277	0.0185	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.0462	FALSE	231	217	16	283	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	2	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	14988	0	0	1	0.0277	0.0185	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0462	FALSE	231	217	16	283	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0277	0.0092	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0369	FALSE	16	356	14	466	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPT2--RP11-1143G9.4	3	0	CPT2	8127	chr1:53679595:+	RP11-1143G9.4	12120	chr12:69747287:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	GTEx_FI:{Salivary_Gland=[count:7=pct:17.9]},CPT2->carnitine_palmitoyltransferase_2,chr1:53662101-53679869:+,RP11-1143G9.4->chr12:69747273-69748005:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0277	TRUE	7	0	0	2	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP8--MT-CO1	3	0	MT-ATP8	1224	chrM:8589:+	MT-CO1	4762	chrM:6458:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	LOCAL_REARRANGEMENT:+:[921],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0277	FALSE	3	1	0	9	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	3	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0277	FALSE	351	233	23	137	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0277	FALSE	499	1288	110	792	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0277	FALSE	369	2501	205	193	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	13	1	0.19	0.0185	0.0092	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.0277	TRUE	458	1351	185	561	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ORC4--ARHGAP15	2	0	ORC4	1946	chr2:148778202:-	ARHGAP15	47123	chr2:144313977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	GTEx&tcga_normals:1/3694=0.03%,ORC4->chr2:148687968-148779147:-,origin_recognition_complex_subunit_4,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--SRSF1	2	0	PROSC	2996	chr8:37623873:+	SRSF1	14701	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Breast=[count:2=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=3,Brain_-_Hippocampus=1,Thyroid=1,Adipose_-_Subcutaneous=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0185	TRUE	6	2	0	9	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-319G9.5--WWOX	2	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0185	FALSE	154	425	28	76	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC005932.1--UBB	1	1	AC005932.1	1303	chr19:19051433:+	UBB	7159	chr17:16285216:+	ONLY_REF_SPLICE	YES	5	354	0.29	0.01	0.0092	0.0092	AC005932.1->chr19:19051131-19057640:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.29	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLD4--AKT1	1	1	PLD4	7428	chr14:105398692:+	AKT1	16542	chr14:105246553:-	ONLY_REF_SPLICE	YES	785	78	0	0.03	0.0092	0.0092	PLD4->chr14:105391153-105399574:+,phospholipase_D_family_member_4,AKT1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr14:105235686-105262088:-,v-akt_murine_thymoma_viral_oncogene_homolog_1	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--TOPBP1	1	1	PROSC	2996	chr8:37623873:+	TOPBP1	33142	chr3:133336170:-	ONLY_REF_SPLICE	YES	272	228	0.01	0.01	0.0092	0.0092	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),TOPBP1->chr3:133317019-133380737:-,topoisomerase_(DNA)_II_binding_protein_1	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB40C--NOP14	1	1	RAB40C	2077	chr16:640433:+	NOP14	17174	chr4:2956290:-	ONLY_REF_SPLICE	YES	42	91	0.05	0.02	0.0092	0.0092	RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+,NOP14->NOP14_nucleolar_protein,chr4:2939660-2965112:-	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.0184	TRUE	0	0	0	1	0	FALSE	ACH-000168
NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMPD2--MICAL1	1	1	SMPD2	3658	chr6:109764623:+	MICAL1	19413	chr6:109766198:-	ONLY_REF_SPLICE	NO	26	363	0.07	0.01	0.0092	0.0092	LOCAL_INVERSION:+:-:[143],SMPD2->chr6:109761966-109765122:+,sphingomyelin_phosphodiesterase_2,MICAL1->chr6:109765265-109787171:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_1	NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.07	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000168
COLO680N_OESOPHAGUS	PPP2CA--LINC00491	250	147	PPP2CA	1383	chr5:133561451:-	LINC00491	21617	chr5:101945470:-	ONLY_REF_SPLICE	YES	105	4	0.79	0.99	2.397	1.4094	PPP2CA->chr5:133530025-133561833:-,protein_phosphatase_2_catalytic_subunit_alpha,LINC00491->chr5:101944860-102007263:-,long_intergenic_non-protein_coding_RNA_491	COLO680N_OESOPHAGUS	0.79	0.99	3.8064	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	TIMM23B--LINC00843	81	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7766	0.3068	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COLO680N_OESOPHAGUS	0.99	1	1.0834	TRUE	508	994	45	981	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	PPP2CA--LINC00491	29	166	PPP2CA	1383	chr5:133561451:-	LINC00491	18334	chr5:101971995:-	ONLY_REF_SPLICE	YES	105	1	0.65	0.99	0.2781	1.5916	PPP2CA->chr5:133530025-133561833:-,protein_phosphatase_2_catalytic_subunit_alpha,LINC00491->chr5:101944860-102007263:-,long_intergenic_non-protein_coding_RNA_491	COLO680N_OESOPHAGUS	0.65	0.99	1.8697	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	MT-TA--MT-TC	59	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5657	0.0384	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO680N_OESOPHAGUS	1	1	0.6041	FALSE	462	80	0	856	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	RPS6KB1--VMP1	56	16	RPS6KB1	15604	chr17:58018304:+	VMP1	36266	chr17:57889031:+	ONLY_REF_SPLICE	YES	71	334	0.5	0.18	0.5369	0.1534	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	COLO680N_OESOPHAGUS	0.18	0.5	0.6903	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	TIMM23--RP11-464F9.1	56	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	161	2	0.26	0.97	0.5369	0.0192	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	COLO680N_OESOPHAGUS	0.26	0.97	0.5561	TRUE	519	3926	326	965	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	GOLGA7--RP11-94H18.1	37	26	GOLGA7	2723	chr8:41355180:+	RP11-94H18.1	12544	chr8:29702967:-	ONLY_REF_SPLICE	YES	187	0	0.25	1	0.3548	0.2493	GOLGA7->chr8:41347915-41368499:+,golgin_A7,RP11-94H18.1->chr8:29672520-29712059:-	COLO680N_OESOPHAGUS	0.25	1	0.6041	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	30	35	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	11	1	0.86	0.98	0.2876	0.3356	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO680N_OESOPHAGUS	0.86	0.98	0.6232	FALSE	515	4851	409	746	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	BLACE--PKD1L2	36	3	BLACE	1036	chr7:155160594:-	PKD1L2	47151	chr16:81175130:-	INCL_NON_REF_SPLICE	YES	0	7	1	0.85	0.3452	0.0288	BLACE->B-cell_acute_lymphoblastic_leukemia_expressed,chr7:155149680-155160629:-,PKD1L2->chr16:81134480-81253975:-,polycystin_1_like_2_(gene/pseudogene)	COLO680N_OESOPHAGUS	0.85	1	0.374	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	PWWP2B--LYST	30	20	PWWP2B	3848	chr10:134219793:+	LYST	70841	chr1:235856786:-	ONLY_REF_SPLICE	YES	53	14	0.49	0.78	0.2876	0.1918	{Klijn_CCL:Head-Neck=1},PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator	COLO680N_OESOPHAGUS	0.49	0.78	0.4794	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	C15orf57--CBX3	24	20	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	57	28	0.44	0.61	0.2301	0.1918	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COLO680N_OESOPHAGUS	0.44	0.61	0.4219	TRUE	267	562	48	632	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	SALL4--RP11-111I12.1	19	31	SALL4	1242	chr20:50418818:-	RP11-111I12.1	14881	chr1:30502337:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1822	0.2972	SALL4->chr20:50400581-50419059:-,spalt-like_transcription_factor_4,RP11-111I12.1->chr1:30486799-30510459:-	COLO680N_OESOPHAGUS	1	1	0.4794	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	PCBP2--SP1	23	11	PCBP2	7833	chr12:53849785:+	SP1	27203	chr12:53775443:+	ONLY_REF_SPLICE	YES	1286	34	0.03	0.5	0.2205	0.1055	LOCAL_REARRANGEMENT:+:[25295],PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	COLO680N_OESOPHAGUS	0.03	0.5	0.326	TRUE	0	0	0	1	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MTUS1--TACC1	20	14	MTUS1	25593	chr8:17532695:-	TACC1	42402	chr8:38599869:+	ONLY_REF_SPLICE	YES	37	0	0.48	1	0.1918	0.1342	MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	COLO680N_OESOPHAGUS	0.48	1	0.326	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	PLXDC1--TAF13	22	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2109	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	COLO680N_OESOPHAGUS	1	1	0.2109	TRUE	7	10	0	216	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	BLACE--PKD1L2	18	8	BLACE	1126	chr7:155160504:-	PKD1L2	47151	chr16:81175130:-	ONLY_REF_SPLICE	YES	0	7	1	0.79	0.1726	0.0767	BLACE->B-cell_acute_lymphoblastic_leukemia_expressed,chr7:155149680-155160629:-,PKD1L2->chr16:81134480-81253975:-,polycystin_1_like_2_(gene/pseudogene)	COLO680N_OESOPHAGUS	0.79	1	0.2493	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	RP11-680G10.1--GSE1	15	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	27	1	0.44	0.1438	0.0575	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COLO680N_OESOPHAGUS	0.44	1	0.2013	TRUE	465	1949	224	605	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	SALL4--RP11-111I12.1	6	34	SALL4	2030	chr20:50418030:-	RP11-111I12.1	14881	chr1:30502337:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.0575	0.326	SALL4->chr20:50400581-50419059:-,spalt-like_transcription_factor_4,RP11-111I12.1->chr1:30486799-30510459:-	COLO680N_OESOPHAGUS	0.98	1	0.3835	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	MT-ND5--MT-ND6	13	5	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	4094	1	0	0.1246	0.0479	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	COLO680N_OESOPHAGUS	0	1	0.1725	FALSE	26	124	4	93	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	5	37	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	11	0	0.79	1	0.0479	0.3548	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO680N_OESOPHAGUS	0.79	1	0.4027	FALSE	407	2205	196	549	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	NRIP1--AF127936.7	13	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1246	0.0192	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO680N_OESOPHAGUS	1	1	0.1438	FALSE	292	1546	117	613	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	4	37	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	11	0	0.79	1	0.0384	0.3548	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO680N_OESOPHAGUS	0.79	1	0.3932	FALSE	275	511	55	178	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	3	38	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	1	0.91	0.98	0.0288	0.3643	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO680N_OESOPHAGUS	0.91	0.98	0.3931	FALSE	467	2173	244	435	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	2	40	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	4	0	0.91	1	0.0192	0.3835	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO680N_OESOPHAGUS	0.91	1	0.4027	FALSE	192	492	57	212	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	ITGB4--TXNIP	11	0	ITGB4	26684	chr17:73752573:+	TXNIP	33492	chr1:145440950:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1055	0	ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4,TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein	COLO680N_OESOPHAGUS	1	1	0.1055	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	MT-TA--MT-TC	10	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0959	0.0288	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO680N_OESOPHAGUS	1	1	0.1247	FALSE	462	80	0	856	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	RP11-680G10.1--GSE1	9	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	17	1	0.48	0.0863	0.0671	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COLO680N_OESOPHAGUS	0.48	1	0.1534	TRUE	458	1351	185	561	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	RPS6--B2M	10	2	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	3526	0	0	1	0.0959	0.0192	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	COLO680N_OESOPHAGUS	0	1	0.1151	TRUE	0	0	0	28	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MT-ND6--MT-TE	7	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0671	0.1246	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO680N_OESOPHAGUS	0.95	1	0.1917	FALSE	499	1288	110	792	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	SCMH1--ROR1	10	1	SCMH1	1096	chr1:41707731:-	ROR1	38855	chr1:64643111:+	ONLY_REF_SPLICE	YES	1	9	0.92	0.55	0.0959	0.0096	SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila),ROR1->chr1:64239693-64647181:+,receptor_tyrosine_kinase-like_orphan_receptor_1	COLO680N_OESOPHAGUS	0.55	0.92	0.1055	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	MT-ND6--MT-TE	5	19	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0479	0.1822	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO680N_OESOPHAGUS	0.96	1	0.2301	FALSE	499	1288	110	792	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	SALL4--RP11-111I12.1	1	34	SALL4	3178	chr20:50413965:-	RP11-111I12.1	14881	chr1:30502337:-	ONLY_REF_SPLICE	YES	3	0	0.92	1	0.0096	0.326	SALL4->chr20:50400581-50419059:-,spalt-like_transcription_factor_4,RP11-111I12.1->chr1:30486799-30510459:-	COLO680N_OESOPHAGUS	0.92	1	0.3356	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	MT-ND4--MT-CO2	9	1	MT-ND4	1209	chrM:10968:+	MT-CO2	5522	chrM:7729:+	INCL_NON_REF_SPLICE	NO	11734	7669	0	0	0.0863	0.0096	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	COLO680N_OESOPHAGUS	0	0	0.0959	FALSE	5	1	0	19	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	HLA-A--MT-ND1	8	2	HLA-A	2742	chr6:29910778:+	MT-ND1	8756	chrM:3437:+	INCL_NON_REF_SPLICE	YES	6875	2992	0	0	0.0767	0.0192	HLA-A->chr6:29909037-29913661:+,major_histocompatibility_complex,_class_I,_A,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	COLO680N_OESOPHAGUS	0	0	0.0959	FALSE	1	0	0	11	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MT-ND6--MT-TE	8	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0767	0.0192	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO680N_OESOPHAGUS	1	1	0.0959	FALSE	499	1288	110	792	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MT-ND4--MT-CO2	7	5	MT-ND4	1496	chrM:11255:+	MT-CO2	5511	chrM:7718:+	INCL_NON_REF_SPLICE	YES	17058	5900	0	0	0.0671	0.0479	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	COLO680N_OESOPHAGUS	0	0	0.115	FALSE	5	1	0	19	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	NPM1P24--SET	8	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0767	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	COLO680N_OESOPHAGUS	1	1	0.0767	TRUE	0	0	0	434	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	LGALS3BP--KRT18	7	3	LGALS3BP	4100	chr17:76972120:-	KRT18	11864	chr12:53342905:+	INCL_NON_REF_SPLICE	YES	3855	2	0	0.83	0.0671	0.0288	LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,KRT18->chr12:53342655-53346685:+,keratin_18	COLO680N_OESOPHAGUS	0	0.83	0.0959	FALSE	0	0	0	9	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MT-ND6--MT-TE	7	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0.0096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO680N_OESOPHAGUS	1	1	0.0767	FALSE	499	1288	110	792	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MT-ND5--MT-ND6	5	8	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0.0767	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	COLO680N_OESOPHAGUS	1	1	0.1246	FALSE	26	124	4	93	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MT-ND6--MT-TE	7	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO680N_OESOPHAGUS	1	1	0.0671	FALSE	499	1288	110	792	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	DNAJC25--UGCG	6	3	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	218	565	0.04	0.02	0.0575	0.0288	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	COLO680N_OESOPHAGUS	0.02	0.04	0.0863	TRUE	50	73	10	50	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	C15orf57--CBX3	3	14	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	56	29	0.23	0.37	0.0288	0.1342	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COLO680N_OESOPHAGUS	0.23	0.37	0.163	TRUE	267	562	48	632	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	NRIP1--AF127936.7	6	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.53	1	0.0575	0.0192	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO680N_OESOPHAGUS	0.53	1	0.0767	FALSE	125	705	46	456	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	6	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	2	2	0.78	0.78	0.0575	0.0096	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	COLO680N_OESOPHAGUS	0.78	0.78	0.0671	FALSE	33	240	4	98	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MT-TA--MT-TC	5	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0.0479	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO680N_OESOPHAGUS	1	1	0.0958	FALSE	462	80	0	856	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	PWWP2B--LYST	5	5	PWWP2B	3545	chr10:134219490:+	LYST	70841	chr1:235856786:-	ONLY_REF_SPLICE	YES	39	14	0.2	0.42	0.0479	0.0479	{Klijn_CCL:Head-Neck=1},PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator	COLO680N_OESOPHAGUS	0.2	0.42	0.0958	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	EXTL3-AS1--CCDC25	5	4	EXTL3-AS1	4493	chr8:28555489:-	CCDC25	15542	chr8:27606115:-	INCL_NON_REF_SPLICE	YES	3	80	0.75	0.1	0.0479	0.0384	EXTL3-AS1->EXTL3_antisense_RNA_1,chr8:28553718-28558981:-,CCDC25->chr8:27590835-27630170:-,coiled-coil_domain_containing_25	COLO680N_OESOPHAGUS	0.1	0.75	0.0863	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO680N_OESOPHAGUS	1	1	0.0575	FALSE	462	80	0	856	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MT-ND5--MT-ND6	4	6	MT-ND5	2761	chrM:14097:+	MT-ND6	6169	chrM:14317:-	INCL_NON_REF_SPLICE	YES	0	4203	1	0	0.0384	0.0575	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	COLO680N_OESOPHAGUS	0	1	0.0959	FALSE	26	124	4	93	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MT-ND4--MT-CO2	5	1	MT-ND4	1222	chrM:10981:+	MT-CO2	5514	chrM:7721:+	INCL_NON_REF_SPLICE	YES	12008	6745	0	0	0.0479	0.0096	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	COLO680N_OESOPHAGUS	0	0	0.0575	FALSE	5	1	0	19	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MTUS1--TACC1	3	8	MTUS1	25593	chr8:17532695:-	TACC1	49043	chr8:38646222:+	ONLY_REF_SPLICE	YES	37	65	0.23	0.14	0.0288	0.0767	MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	COLO680N_OESOPHAGUS	0.14	0.23	0.1055	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	MT-ND4--MT-CO2	4	1	MT-ND4	1220	chrM:10979:+	MT-CO2	5458	chrM:7665:+	INCL_NON_REF_SPLICE	YES	11936	2	0	0.71	0.0384	0.0096	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	COLO680N_OESOPHAGUS	0	0.71	0.048	FALSE	5	1	0	19	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MT-ND4--MT-CO2	4	1	MT-ND4	1248	chrM:11007:+	MT-CO2	5475	chrM:7682:+	INCL_NON_REF_SPLICE	YES	12436	5	0	0.5	0.0384	0.0096	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	COLO680N_OESOPHAGUS	0	0.5	0.048	FALSE	5	1	0	19	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	PYGM--ATL3	4	1	PYGM	3519	chr11:64525251:-	ATL3	20260	chr11:63420047:-	ONLY_REF_SPLICE	YES	0	75	1	0.06	0.0384	0.0096	PYGM->chr11:64513861-64527769:-,phosphorylase,_glycogen,_muscle,ATL3->atlastin_GTPase_3,chr11:63391559-63439393:-	COLO680N_OESOPHAGUS	0.06	1	0.048	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	RP4-565E6.1--HYDIN	4	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0384	0.0096	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	COLO680N_OESOPHAGUS	1	1	0.048	TRUE	456	1387	91	133	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	LGALS3BP--KRT18	3	4	LGALS3BP	4113	chr17:76972107:-	KRT18	11877	chr12:53342918:+	INCL_NON_REF_SPLICE	YES	3691	5	0	0.58	0.0288	0.0384	LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,KRT18->chr12:53342655-53346685:+,keratin_18	COLO680N_OESOPHAGUS	0	0.58	0.0672	FALSE	0	0	0	9	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MT-TA--MT-TC	3	4	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	0.0384	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO680N_OESOPHAGUS	1	1	0.0672	FALSE	462	80	0	856	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MT-TA--MT-TC	3	4	MT-TA	1063	chrM:5593:-	MT-TC	4102	chrM:5794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	0.0384	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO680N_OESOPHAGUS	1	1	0.0672	FALSE	462	80	0	856	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0288	0.0288	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO680N_OESOPHAGUS	1	1	0.0576	FALSE	462	80	0	856	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MTUS1--TACC1	1	11	MTUS1	25593	chr8:17532695:-	TACC1	43503	chr8:38602413:+	ONLY_REF_SPLICE	YES	37	4	0.24	0.75	0.0096	0.1055	MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	COLO680N_OESOPHAGUS	0.24	0.75	0.1151	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	PWWP2B--LYST	2	6	PWWP2B	3848	chr10:134219793:+	LYST	71978	chr1:235850347:-	ONLY_REF_SPLICE	YES	53	31	0.13	0.21	0.0192	0.0575	{Klijn_CCL:Head-Neck=1},PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator	COLO680N_OESOPHAGUS	0.13	0.21	0.0767	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	MT-ND4--MT-CO2	3	1	MT-ND4	1275	chrM:11034:+	MT-CO2	5522	chrM:7729:+	INCL_NON_REF_SPLICE	YES	14440	7669	0	0	0.0288	0.0096	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	COLO680N_OESOPHAGUS	0	0	0.0384	FALSE	5	1	0	19	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MT-ND4--MT-CO2	3	1	MT-ND4	1217	chrM:10976:+	MT-CO2	5534	chrM:7741:+	INCL_NON_REF_SPLICE	YES	11830	9548	0	0	0.0288	0.0096	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	COLO680N_OESOPHAGUS	0	0	0.0384	FALSE	5	1	0	19	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MTUS1--TACC1	1	8	MTUS1	25593	chr8:17532695:-	TACC1	47896	chr8:38645075:+	ONLY_REF_SPLICE	YES	37	40	0.2	0.18	0.0096	0.0767	MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	COLO680N_OESOPHAGUS	0.18	0.2	0.0863	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	VTI1A--RP11-57H14.3	3	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	COLO680N_OESOPHAGUS	1	1	0.0288	FALSE	272	151	14	158	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	CTD-2410N18.5--SLCO6A1	2	2	CTD-2410N18.5	1312	chr5:133561451:-	SLCO6A1	8014	chr5:101816138:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0.0192	CTD-2410N18.5->chr5:133502861-133561762:-,SLCO6A1->chr5:101707486-101834720:-,solute_carrier_organic_anion_transporter_family_member_6A1	COLO680N_OESOPHAGUS	1	1	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	31	0.57	0.11	0.0192	0.0192	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	COLO680N_OESOPHAGUS	0.11	0.57	0.0384	FALSE	16	356	14	466	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	SCARB1--UBC	2	2	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	195	54	0.02	0.07	0.0192	0.0192	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	COLO680N_OESOPHAGUS	0.02	0.07	0.0384	TRUE	55	66	6	101	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	CCDC122--ENOX1	2	1	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	13	0	0.19	1	0.0192	0.0096	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	COLO680N_OESOPHAGUS	0.19	1	0.0288	FALSE	39	52	2	34	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MTUS1--TACC1	1	5	MTUS1	23284	chr8:17541837:-	TACC1	49043	chr8:38646222:+	ONLY_REF_SPLICE	YES	39	65	0.13	0.08	0.0096	0.0479	MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	COLO680N_OESOPHAGUS	0.08	0.13	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	ATP2A2--MED13L	2	0	ATP2A2	3040	chr12:110720600:+	MED13L	58747	chr12:116413543:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+,MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like	COLO680N_OESOPHAGUS	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	EDEM3--GLRX5	2	0	EDEM3	22757	chr1:184663178:-	GLRX5	33427	chr14:96010284:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	EDEM3->ER_degradation_enhancing_alpha-mannosidase_like_protein_3,chr1:184659365-184724047:-,GLRX5->chr14:95999840-96011061:+,glutaredoxin_5	COLO680N_OESOPHAGUS	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	EFCAB11--RP11-944C7.1	2	0	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	COLO680N_OESOPHAGUS	1	1	0.0192	TRUE	31	91	1	18	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	IFT140--ATXN2L	2	0	IFT140	21093	chr16:1607936:-	ATXN2L	41909	chr16:28841190:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	IFT140->chr16:1560428-1662111:-,intraflagellar_transport_140,ATXN2L->ataxin_2_like,chr16:28834356-28848558:+	COLO680N_OESOPHAGUS	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	IFT81--NUP205	2	0	IFT81	5388	chr12:110570441:+	NUP205	59161	chr7:135309912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	IFT81->chr12:110562140-110656602:+,intraflagellar_transport_81,NUP205->chr7:135242667-135333505:+,nucleoporin_205kDa	COLO680N_OESOPHAGUS	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	NQO2--MKI67	2	0	NQO2	9651	chr6:3006793:+	MKI67	21923	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	COLO680N_OESOPHAGUS	1	1	0.0192	TRUE	0	0	0	2	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	SNHG16--MITD1	2	0	SNHG16	1092	chr17:74553939:+	MITD1	16979	chr2:99787115:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,MITD1->chr2:99777890-99797521:-,microtubule_interacting_and_trafficking_domain_containing_1	COLO680N_OESOPHAGUS	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	VMP1--LYG1	2	0	VMP1	16122	chr17:57915573:+	LYG1	26487	chr2:99912165:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,LYG1->chr2:99900701-99921205:-,lysozyme_g1	COLO680N_OESOPHAGUS	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	ZNF506--NABP1	2	0	ZNF506	4535	chr19:19916840:-	NABP1	22526	chr2:192548455:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	ZNF506->chr19:19896648-19932560:-,zinc_finger_protein_506,NABP1->chr2:192542794-192561385:+,nucleic_acid_binding_protein_1	COLO680N_OESOPHAGUS	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	CHD2--PTTG1	1	2	CHD2	6529	chr15:93444529:+	PTTG1	60330	chr5:159849309:+	ONLY_REF_SPLICE	YES	142	35	0.02	0.08	0.0096	0.0192	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,PTTG1->Oncogene{Bushman},chr5:159848829-159855748:+,pituitary_tumor-transforming_1	COLO680N_OESOPHAGUS	0.02	0.08	0.0288	TRUE	0	0	0	2	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	6	0	0.33	1	0.0096	0.0192	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO680N_OESOPHAGUS	0.33	1	0.0288	FALSE	164	806	69	479	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	7488	chr5:95966789:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	420	1	0	0.0096	0.0096	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	COLO680N_OESOPHAGUS	0	1	0.0192	FALSE	18	50	10	12	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	420	1	0	0.0096	0.0096	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	COLO680N_OESOPHAGUS	0	1	0.0192	FALSE	347	1186	183	220	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	462	1	0	0.0096	0.0096	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	COLO680N_OESOPHAGUS	0	1	0.0192	FALSE	15	36	8	26	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	EXD3--NOC4L	1	1	EXD3	27957	chr9:140218177:-	NOC4L	39400	chr12:132635526:+	ONLY_REF_SPLICE	YES	51	59	0.04	0.03	0.0096	0.0096	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Nerve=[count:1=pct:0.6],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Breast_-_Mammary_Tissue=1,Nerve_-_Tibial=1},EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	COLO680N_OESOPHAGUS	0.03	0.04	0.0192	TRUE	2	0	0	1	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MIR205HG--C9orf3	1	1	MIR205HG	1589	chr1:209602753:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	839	61	0	0.03	0.0096	0.0096	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	COLO680N_OESOPHAGUS	0	0.03	0.0192	FALSE	9	19	1	3	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	MIR205HG--C9orf3	1	1	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	NO	594	61	0	0.03	0.0096	0.0096	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	COLO680N_OESOPHAGUS	0	0.03	0.0192	FALSE	86	303	14	25	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	RBM45--FASTKD1	1	1	RBM45	8975	chr2:178990911:+	FASTKD1	25447	chr2:170413807:-	ONLY_REF_SPLICE	YES	7	30	0.22	0.06	0.0096	0.0096	RBM45->RNA_binding_motif_protein_45,chr2:178977151-179003738:+,FASTKD1->FAST_kinase_domains_1,chr2:170386259-170430385:-	COLO680N_OESOPHAGUS	0.06	0.22	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000717
COLO680N_OESOPHAGUS	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0096	0.0096	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO680N_OESOPHAGUS	1	1	0.0192	FALSE	416	2512	207	587	0	FALSE	ACH-000717
COLO680N_OESOPHAGUS	TRAPPC9--KCNK9	1	1	TRAPPC9	55504	chr8:140898123:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	NO	69	0	0.03	1	0.0096	0.0096	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	COLO680N_OESOPHAGUS	0.03	1	0.0192	FALSE	7	13	2	16	0	FALSE	ACH-000717
CADOES1_BONE	EWSR1--ERG	238	77	EWSR1	11554	chr22:29683123:+	ERG	42460	chr21:39764366:-	ONLY_REF_SPLICE	YES	317	0	0.5	1	2.6082	0.8438	Cosmic{samples=1639,mutations=122,papers=88},Mitelman{SA_Ewing=2},chimerdb_omim:{Ewingtumors},chimerdb_pubmed{Intraabdominal desmoplastic small round cell tumor,Ewing's tumor,Desmoplastic small roundcell tumour,Ewing sarcoma,haematopoietic tumour,Ewing sarcoma family of tumors (ESFT),Extraskeletal Ewing's sarcoma,Ewing family tumors (EFTs),soft tissue sarcomas (STSs)},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	CADOES1_BONE	0.5	1	3.452	TRUE	0	0	0	1	0	TRUE	ACH-000210
CADOES1_BONE	TIMM23B--LINC00843	76	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8329	0.1425	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CADOES1_BONE	0.99	1	0.9754	TRUE	508	994	45	981	0	FALSE	ACH-000210
CADOES1_BONE	TIMM23--RP11-464F9.1	41	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	90	1	0.32	0.98	0.4493	0.011	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CADOES1_BONE	0.32	0.98	0.4603	TRUE	519	3926	326	965	0	FALSE	ACH-000210
CADOES1_BONE	OR51S1--TP53I11	35	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3836	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	CADOES1_BONE	1	1	0.3836	TRUE	402	216	10	229	0	FALSE	ACH-000210
CADOES1_BONE	RP11-123O10.4--GRIP1	30	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3288	0.0658	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CADOES1_BONE	1	1	0.3946	FALSE	416	2512	207	587	0	FALSE	ACH-000210
CADOES1_BONE	MT-TA--MT-TC	28	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3069	0.0438	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CADOES1_BONE	1	1	0.3507	FALSE	462	80	0	856	0	FALSE	ACH-000210
CADOES1_BONE	EEF2--RPS28	22	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	4239	0	0.01	1	0.2411	0.011	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CADOES1_BONE	0.01	1	0.2521	TRUE	0	0	0	100	0	FALSE	ACH-000210
CADOES1_BONE	EWSR1--ERG	1	77	EWSR1	11554	chr22:29683123:+	ERG	41249	chr21:39767502:-	ONLY_REF_SPLICE	YES	317	0	0.2	1	0.011	0.8438	Cosmic{samples=1639,mutations=122,papers=88},Mitelman{SA_Ewing=2},chimerdb_omim:{Ewingtumors},chimerdb_pubmed{Intraabdominal desmoplastic small round cell tumor,Ewing's tumor,Desmoplastic small roundcell tumour,Ewing sarcoma,haematopoietic tumour,Ewing sarcoma family of tumors (ESFT),Extraskeletal Ewing's sarcoma,Ewing family tumors (EFTs),soft tissue sarcomas (STSs)},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	CADOES1_BONE	0.2	1	0.8548	TRUE	0	0	0	1	0	TRUE	ACH-000210
CADOES1_BONE	RP11-444D3.1--SOX5	16	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.95	0.1753	0.0219	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CADOES1_BONE	0.95	1	0.1972	TRUE	477	1352	189	275	0	FALSE	ACH-000210
CADOES1_BONE	MT-ND6--MT-TE	15	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1644	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CADOES1_BONE	1	1	0.1644	FALSE	499	1288	110	792	0	FALSE	ACH-000210
CADOES1_BONE	FAM211A--MT-CO3	14	2	FAM211A	8450	chr17:16344949:-	MT-CO3	11714	chrM:9412:+	INCL_NON_REF_SPLICE	YES	2	6830	0.89	0	0.1534	0.0219	FAM211A->chr17:16344891-16395467:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CADOES1_BONE	0	0.89	0.1753	FALSE	0	0	0	7	0	FALSE	ACH-000210
CADOES1_BONE	MT-TA--MT-TC	12	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1315	0.0548	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CADOES1_BONE	1	1	0.1863	FALSE	462	80	0	856	0	FALSE	ACH-000210
CADOES1_BONE	MT-ND6--MT-TE	13	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1425	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CADOES1_BONE	1	1	0.1425	FALSE	499	1288	110	792	0	FALSE	ACH-000210
CADOES1_BONE	RP11-680G10.1--GSE1	11	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.71	0.1205	0.0438	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CADOES1_BONE	0.71	1	0.1643	TRUE	458	1351	185	561	0	FALSE	ACH-000210
CADOES1_BONE	DNAJC25--UGCG	9	2	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	62	52	0.15	0.17	0.0986	0.0219	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	CADOES1_BONE	0.15	0.17	0.1205	TRUE	50	73	10	50	0	FALSE	ACH-000210
CADOES1_BONE	RPS6--B2M	9	1	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	3641	0	0	1	0.0986	0.011	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	CADOES1_BONE	0	1	0.1096	TRUE	0	0	0	28	0	FALSE	ACH-000210
CADOES1_BONE	RP11-680G10.1--GSE1	8	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	27	1	0.31	0.0877	0.0438	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CADOES1_BONE	0.31	1	0.1315	TRUE	465	1949	224	605	0	FALSE	ACH-000210
CADOES1_BONE	RP11-319G9.5--WWOX	7	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	78	1	0.09	0.0767	0.011	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	CADOES1_BONE	0.09	1	0.0877	FALSE	154	425	28	76	0	FALSE	ACH-000210
CADOES1_BONE	TIMP3--MT-ND4	7	1	TIMP3	5621	chr22:33255392:+	MT-ND4	12727	chrM:11227:+	INCL_NON_REF_SPLICE	YES	2964	7883	0	0	0.0767	0.011	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	CADOES1_BONE	0	0	0.0877	FALSE	0	0	0	10	0	FALSE	ACH-000210
CADOES1_BONE	RP11-353N4.6--SEC22B	6	3	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	47	97	0.16	0.08	0.0658	0.0329	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	CADOES1_BONE	0.08	0.16	0.0987	TRUE	49	42	7	43	0	FALSE	ACH-000210
CADOES1_BONE	EIF1--RPS28	6	1	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	4	0	0.64	1	0.0658	0.011	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CADOES1_BONE	0.64	1	0.0768	TRUE	0	0	0	81	0	FALSE	ACH-000210
CADOES1_BONE	EIF1--RPS28	6	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0658	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CADOES1_BONE	1	1	0.0658	TRUE	0	0	0	81	0	FALSE	ACH-000210
CADOES1_BONE	MT-ND6--MT-TE	5	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0548	0.0219	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CADOES1_BONE	0.88	1	0.0767	FALSE	499	1288	110	792	0	FALSE	ACH-000210
CADOES1_BONE	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CADOES1_BONE	1	1	0.0548	FALSE	462	80	0	856	0	FALSE	ACH-000210
CADOES1_BONE	EIF1--RPL5	4	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	CADOES1_BONE	1	1	0.0438	TRUE	0	0	0	39	0	FALSE	ACH-000210
CADOES1_BONE	SLC7A5--ATP5G2	4	0	SLC7A5	8052	chr16:87871490:-	ATP5G2	21321	chr12:54066421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	CADOES1_BONE	1	1	0.0438	TRUE	0	0	0	7	0	TRUE	ACH-000210
CADOES1_BONE	MT-ND6--MT-TE	3	3	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	10	0	0.38	1	0.0329	0.0329	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CADOES1_BONE	0.38	1	0.0658	FALSE	499	1288	110	792	0	FALSE	ACH-000210
CADOES1_BONE	RP11-353N4.6--SEC22B	3	3	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	47	127	0.11	0.05	0.0329	0.0329	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	CADOES1_BONE	0.05	0.11	0.0658	TRUE	33	36	9	21	0	FALSE	ACH-000210
CADOES1_BONE	MT-ND6--MT-TE	3	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	10	0	0.33	1	0.0329	0.0219	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CADOES1_BONE	0.33	1	0.0548	FALSE	499	1288	110	792	0	FALSE	ACH-000210
CADOES1_BONE	NRIP1--AF127936.7	3	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0329	0.0219	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CADOES1_BONE	0.83	1	0.0548	FALSE	292	1546	117	613	0	FALSE	ACH-000210
CADOES1_BONE	CTD-2337A12.1--CAST	3	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	1	33	0.8	0.11	0.0329	0.011	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	CADOES1_BONE	0.11	0.8	0.0439	TRUE	347	1186	183	220	0	FALSE	ACH-000210
CADOES1_BONE	EIF1--RPS28	3	1	EIF1	1121	chr17:39845257:+	RPS28	8168	chr19:8386425:+	INCL_NON_REF_SPLICE	YES	677	0	0.01	1	0.0329	0.011	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CADOES1_BONE	0.01	1	0.0439	FALSE	0	0	0	81	0	FALSE	ACH-000210
CADOES1_BONE	LINC01036--LINC01037	3	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0.011	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	CADOES1_BONE	1	1	0.0439	FALSE	0	24	0	62	0	FALSE	ACH-000210
CADOES1_BONE	SNTG1--RP11-759A9.1	3	1	SNTG1	8120	chr8:51085195:+	RP11-759A9.1	32347	chr8:51294466:+	ONLY_REF_SPLICE	YES	34	0	0.11	1	0.0329	0.011	NEIGHBORS_OVERLAP:+:+:[1260],SNTG1->chr8:50822349-51706678:+,syntrophin_gamma_1,RP11-759A9.1->chr8:51293575-51294835:+	CADOES1_BONE	0.11	1	0.0439	FALSE	0	7	0	1	0	FALSE	ACH-000210
CADOES1_BONE	RP11-353N4.6--SEC22B	2	3	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	48	97	0.09	0.05	0.0219	0.0329	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	CADOES1_BONE	0.05	0.09	0.0548	TRUE	49	42	7	43	0	FALSE	ACH-000210
CADOES1_BONE	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0.0329	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CADOES1_BONE	1	1	0.0548	FALSE	467	2173	244	435	0	FALSE	ACH-000210
CADOES1_BONE	RP11-124B13.1--RP11-158A14.1	2	2	RP11-124B13.1	1126	chr8:6114933:-	RP11-158A14.1	8240	chr8:5894496:-	ONLY_REF_SPLICE	YES	29	0	0.12	1	0.0219	0.0219	NEIGHBORS[7379],RP11-124B13.1->chr8:5901875-6115058:-,RP11-158A14.1->chr8:5893955-5894496:-	CADOES1_BONE	0.12	1	0.0438	FALSE	0	0	0	2	0	FALSE	ACH-000210
CADOES1_BONE	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0219	0.0219	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CADOES1_BONE	0.8	1	0.0438	FALSE	515	4851	409	746	0	FALSE	ACH-000210
CADOES1_BONE	PDS5B--CDX2	2	1	PDS5B	1167	chr13:33160730:+	CDX2	52927	chr13:28539152:-	ONLY_REF_SPLICE	YES	7	921	0.3	0	0.0219	0.011	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,CDX2->Oncogene{Bushman},caudal_type_homeobox_2,chr13:28536274-28545276:-	CADOES1_BONE	0	0.3	0.0329	FALSE	0	0	0	1	0	FALSE	ACH-000210
CADOES1_BONE	POLE--ANKLE2	2	0	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	CADOES1_BONE	1	1	0.0219	TRUE	0	0	0	11	0	TRUE	ACH-000210
CADOES1_BONE	RP11-141M1.3--STARD13	2	0	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	CADOES1_BONE	1	1	0.0219	FALSE	141	264	50	91	0	FALSE	ACH-000210
CADOES1_BONE	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	11	0	0.27	1	0.011	0.0329	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CADOES1_BONE	0.27	1	0.0439	FALSE	164	806	69	479	0	FALSE	ACH-000210
CADOES1_BONE	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0.0329	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CADOES1_BONE	1	1	0.0439	FALSE	93	270	15	244	0	FALSE	ACH-000210
HS944T_SKIN	TIMM23B--LINC00843	87	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8847	0.2135	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS944T_SKIN	0.99	1	1.0982	TRUE	508	994	45	981	0	FALSE	ACH-000632
HS944T_SKIN	TIMM23--RP11-464F9.1	52	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	227	1	0.19	0.98	0.5288	0.0203	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS944T_SKIN	0.19	0.98	0.5491	TRUE	519	3926	326	965	0	FALSE	ACH-000632
HS944T_SKIN	PLXDC1--TAF13	32	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3254	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS944T_SKIN	1	1	0.3254	TRUE	7	10	0	216	0	FALSE	ACH-000632
HS944T_SKIN	SSX2IP--YTHDF2	28	6	SSX2IP	5335	chr1:85135364:-	YTHDF2	24743	chr1:29064170:+	ONLY_REF_SPLICE	YES	127	401	0.21	0.08	0.2847	0.061	SSX2IP->chr1:85109390-85156486:-,synovial_sarcoma,_X_breakpoint_2_interacting_protein,YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+	HS944T_SKIN	0.08	0.21	0.3457	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	ZNF654--HMGB2	27	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2745	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HS944T_SKIN	1	1	0.2745	TRUE	0	0	0	518	0	FALSE	ACH-000632
HS944T_SKIN	C15orf57--CBX3	22	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	22	34	0.63	0.53	0.2237	0.1627	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS944T_SKIN	0.53	0.63	0.3864	TRUE	267	562	48	632	0	FALSE	ACH-000632
HS944T_SKIN	RBMS1--AC096559.1	20	6	RBMS1	1506	chr2:161349800:-	AC096559.1	45089	chr2:12698332:+	ONLY_REF_SPLICE	YES	20	0	0.57	1	0.2034	0.061	RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-,AC096559.1->chr2:11988748-12718474:+	HS944T_SKIN	0.57	1	0.2644	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	NPM1P24--SET	17	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1729	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HS944T_SKIN	1	1	0.1729	TRUE	0	0	0	434	0	FALSE	ACH-000632
HS944T_SKIN	MT-TA--MT-TC	14	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1424	0.0305	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS944T_SKIN	1	1	0.1729	FALSE	462	80	0	856	0	FALSE	ACH-000632
HS944T_SKIN	C15orf57--CBX3	10	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	21	37	0.5	0.36	0.1017	0.1119	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS944T_SKIN	0.36	0.5	0.2136	TRUE	267	562	48	632	0	FALSE	ACH-000632
HS944T_SKIN	ZCCHC11--ARIH2	11	0	ZCCHC11	42910	chr1:52875156:-	ARIH2	52844	chr3:48964895:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1119	0	GTEx_FI:{Muscle=[count:6=pct:2.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},ZCCHC11->chr1:52873954-53019159:-,zinc_finger_CCHC-type_containing_11,ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+	HS944T_SKIN	1	1	0.1119	TRUE	9	30	5	4	0	FALSE	ACH-000632
HS944T_SKIN	MT-ND6--MT-TE	9	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0915	0.0102	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS944T_SKIN	1	1	0.1017	FALSE	499	1288	110	792	0	FALSE	ACH-000632
HS944T_SKIN	RP11-444D3.1--SOX5	9	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0915	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS944T_SKIN	1	1	0.0915	TRUE	477	1352	189	275	0	FALSE	ACH-000632
HS944T_SKIN	NPM1P24--SET	8	0	NPM1P24	1378	chr10:74677915:-	SET	12311	chr9:131456206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0813	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HS944T_SKIN	1	1	0.0813	TRUE	0	0	0	434	0	FALSE	ACH-000632
HS944T_SKIN	RP11-634B7.4--TRIM58	6	5	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	14	0.92	0.44	0.061	0.0508	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	HS944T_SKIN	0.44	0.92	0.1118	TRUE	158	633	76	73	0	FALSE	ACH-000632
HS944T_SKIN	MT-TA--MT-TC	6	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0.0203	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS944T_SKIN	1	1	0.0813	FALSE	462	80	0	856	0	FALSE	ACH-000632
HS944T_SKIN	MT-ND6--MT-TE	6	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0.0102	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS944T_SKIN	1	1	0.0712	FALSE	499	1288	110	792	0	FALSE	ACH-000632
HS944T_SKIN	RP11-476K15.1--CTD-2015H3.2	6	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	1	1	0.88	0.88	0.061	0.0102	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HS944T_SKIN	0.88	0.88	0.0712	FALSE	0	46	0	73	0	FALSE	ACH-000632
HS944T_SKIN	BCAS3--STAT5B	5	2	BCAS3	2550	chr17:58756901:+	STAT5B	65549	chr17:40371860:-	ONLY_REF_SPLICE	YES	6	24	0.54	0.23	0.0508	0.0203	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B	HS944T_SKIN	0.23	0.54	0.0711	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	CDH13--RP11-22H5.2	5	1	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	39	0	0.13	1	0.0508	0.0102	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	HS944T_SKIN	0.13	1	0.061	FALSE	14	31	0	36	0	FALSE	ACH-000632
HS944T_SKIN	STAT5B--BCAS3	5	0	STAT5B	6020	chr17:40375400:-	BCAS3	24933	chr17:58761343:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0508	0	STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	HS944T_SKIN	1	1	0.0508	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	MT-ND6--MT-TE	3	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0305	0.0712	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS944T_SKIN	0.83	1	0.1017	FALSE	499	1288	110	792	0	FALSE	ACH-000632
HS944T_SKIN	CDH13--RP11-22H5.2	3	2	CDH13	2482	chr16:82671372:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	60	0	0.08	1	0.0305	0.0203	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	HS944T_SKIN	0.08	1	0.0508	FALSE	0	5	0	7	0	FALSE	ACH-000632
HS944T_SKIN	SSX2IP--YTHDF2	2	6	SSX2IP	5335	chr1:85135364:-	YTHDF2	24132	chr1:29063559:+	ONLY_REF_SPLICE	YES	127	37	0.06	0.18	0.0203	0.061	SSX2IP->chr1:85109390-85156486:-,synovial_sarcoma,_X_breakpoint_2_interacting_protein,YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+	HS944T_SKIN	0.06	0.18	0.0813	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	RP11-120D5.1--MID1	3	1	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	43	1	0.09	0.0305	0.0102	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HS944T_SKIN	0.09	1	0.0407	FALSE	2	31	0	60	0	FALSE	ACH-000632
HS944T_SKIN	JSRP1--RPS28	3	0	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HS944T_SKIN	1	1	0.0305	TRUE	0	1	0	84	1	FALSE	ACH-000632
HS944T_SKIN	NDUFA4--PHF14	2	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	517	27	0.01	0.1	0.0203	0.0102	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HS944T_SKIN	0.01	0.1	0.0305	FALSE	19	32	3	60	0	FALSE	ACH-000632
HS944T_SKIN	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.21	1	0.0203	0.0102	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS944T_SKIN	0.21	1	0.0305	FALSE	125	705	46	456	0	FALSE	ACH-000632
HS944T_SKIN	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0203	0.0102	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS944T_SKIN	0.75	1	0.0305	FALSE	407	2205	196	549	0	FALSE	ACH-000632
HS944T_SKIN	CAPZA1--RPL30	2	0	CAPZA1	1711	chr1:113162505:+	RPL30	17032	chr8:99057627:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CAPZA1->capping_actin_protein_of_muscle_Z-line_alpha_subunit_1,chr1:113161795-113214241:+,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	HS944T_SKIN	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	EPS15--WDR78	2	0	EPS15	2172	chr1:51946945:-	WDR78	62233	chr1:67288200:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	EPS15->Oncogene{Bushman},chr1:51819935-51985000:-,epidermal_growth_factor_receptor_pathway_substrate_15,WDR78->WD_repeat_domain_78,chr1:67278568-67390570:-	HS944T_SKIN	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	FGFR2--COL14A1	2	0	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	HS944T_SKIN	1	1	0.0203	TRUE	0	0	0	32	0	FALSE	ACH-000632
HS944T_SKIN	GINS1--FNDC3B	2	0	GINS1	3730	chr20:25394490:+	FNDC3B	54880	chr3:172096060:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GINS1->GINS_complex_subunit_1,chr20:25388363-25433264:+,FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B	HS944T_SKIN	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	LSAMP--TMCC1	2	0	LSAMP	5056	chr3:116163724:-	TMCC1	34566	chr3:129567255:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	HS944T_SKIN	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	MINOS1--CAPZB	2	0	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	HS944T_SKIN	1	1	0.0203	TRUE	2	7	0	21	0	FALSE	ACH-000632
HS944T_SKIN	MIR146A--RNF145	2	0	MIR146A	1173	chr5:159895447:+	RNF145	10783	chr5:158630664:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	MIR146A->chr5:159895275-159914433:+,microRNA_146a,RNF145->chr5:158584417-158637061:-,ring_finger_protein_145	HS944T_SKIN	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	NELFA--POLN	2	0	NELFA	5759	chr4:2010477:-	POLN	39926	chr4:2133017:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_REARRANGEMENT:-:[30015],NELFA->chr4:1984441-2043630:-,negative_elongation_factor_complex_member_A,POLN->chr4:2073645-2243848:-,polymerase_(DNA)_nu	HS944T_SKIN	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS944T_SKIN	1	1	0.0203	FALSE	292	1546	117	613	0	FALSE	ACH-000632
HS944T_SKIN	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HS944T_SKIN	1	1	0.0203	FALSE	416	2512	207	587	0	FALSE	ACH-000632
HS944T_SKIN	SRFBP1--CTC-487M23.8	2	0	SRFBP1	1108	chr5:121297763:+	CTC-487M23.8	19646	chr5:112227300:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	SRFBP1->chr5:121297656-121411265:+,serum_response_factor_binding_protein_1,CTC-487M23.8->chr5:112196885-112228776:+	HS944T_SKIN	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000632
HS944T_SKIN	TRIP12--CAB39	2	0	TRIP12	2222	chr2:230786596:-	CAB39	53720	chr2:231624674:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12,CAB39->calcium_binding_protein_39,chr2:231577560-231685790:+	HS944T_SKIN	1	1	0.0203	TRUE	0	1	0	1	1	TRUE	ACH-000632
HS944T_SKIN	CDH13--RP11-22H5.2	1	2	CDH13	3588	chr16:82673070:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	63	0	0.05	1	0.0102	0.0203	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	HS944T_SKIN	0.05	1	0.0305	FALSE	0	2	0	10	0	FALSE	ACH-000632
HS944T_SKIN	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	1473	68	0	0.04	0.0102	0.0203	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	HS944T_SKIN	0	0.04	0.0305	FALSE	6	50	7	115	0	FALSE	ACH-000632
HS944T_SKIN	YWHAE--CRK	1	2	YWHAE	7944	chr17:1257505:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	810	68	0	0.04	0.0102	0.0203	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	HS944T_SKIN	0	0.04	0.0305	FALSE	0	0	0	4	0	FALSE	ACH-000632
HS944T_SKIN	ARSB--PAPD4	1	1	ARSB	4529	chr5:78260239:-	PAPD4	36060	chr5:78964715:+	ONLY_REF_SPLICE	YES	67	102	0.03	0.02	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},ARSB->arylsulfatase_B,chr5:78073032-78281910:-,PAPD4->PAP_associated_domain_containing_4,chr5:78907943-78982471:+	HS944T_SKIN	0.02	0.03	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000632
HS944T_SKIN	ENC1--PTPRJ	1	1	ENC1	2118	chr5:73936132:-	PTPRJ	17469	chr11:48131610:+	ONLY_REF_SPLICE	NO	129	0	0.02	1	0.0102	0.0102	ENC1->Oncogene{Bushman},chr5:73923234-73937249:-,ectodermal-neural_cortex_1,PTPRJ->Oncogene{Bushman},chr11:48002113-48189670:+,protein_tyrosine_phosphatase,_receptor_type_J	HS944T_SKIN	0.02	1	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000632
HS944T_SKIN	FAM20C--DAZAP1	1	1	FAM20C	5852	chr7:208976:+	DAZAP1	21512	chr19:1417499:+	ONLY_REF_SPLICE	YES	144	150	0.01	0.01	0.0102	0.0102	FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	HS944T_SKIN	0.01	0.01	0.0204	FALSE	0	0	0	3	0	FALSE	ACH-000632
HS944T_SKIN	GULP1--OLA1	1	1	GULP1	2512	chr2:189157907:+	OLA1	36115	chr2:175006728:-	ONLY_REF_SPLICE	YES	204	489	0.01	0	0.0102	0.0102	GULP1->GULP,_engulfment_adaptor_PTB_domain_containing_1,chr2:189156396-189460653:+,OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-	HS944T_SKIN	0	0.01	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000632
HS944T_SKIN	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	15	0	0.12	1	0.0102	0.0102	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS944T_SKIN	0.12	1	0.0204	FALSE	164	806	69	479	0	FALSE	ACH-000632
HS944T_SKIN	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	43	0.29	0.04	0.0102	0.0102	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HS944T_SKIN	0.04	0.29	0.0204	FALSE	16	356	14	466	0	FALSE	ACH-000632
HS944T_SKIN	RP11-476K15.1--CTD-2015H3.2	1	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0102	0.0102	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HS944T_SKIN	0.67	1	0.0204	FALSE	0	46	0	73	0	FALSE	ACH-000632
HS944T_SKIN	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0102	0.0102	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS944T_SKIN	0.67	1	0.0204	FALSE	515	4851	409	746	0	FALSE	ACH-000632
HS944T_SKIN	ZADH2--TSHZ1	1	1	ZADH2	1499	chr18:72920805:-	TSHZ1	22211	chr18:72997403:+	ONLY_REF_SPLICE	YES	67	11	0.03	0.15	0.0102	0.0102	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Brain_-_Hypothalamus=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[1407],ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2,TSHZ1->chr18:72922710-73001905:+,teashirt_zinc_finger_homeobox_1	HS944T_SKIN	0.03	0.15	0.0204	TRUE	0	4	0	5	1	FALSE	ACH-000632
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	260	7	PTMA	6054	chr2:232576687:+	HMGB2	13627	chr4:174253268:-	INCL_NON_REF_SPLICE	YES	6079	1368	0.04	0.16	2.213	0.0596	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.16	2.2726	TRUE	0	0	0	4	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	180	40	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	1.5321	0.3405	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.8726	TRUE	508	994	45	981	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	110	31	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	27	43	0.84	0.77	0.9363	0.2639	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.84	1.2002	TRUE	181	1564	124	196	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	106	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	226	6	0.32	0.95	0.9022	0.0085	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.95	0.9107	TRUE	519	3926	326	965	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	74	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6298	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6298	TRUE	0	0	0	518	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	62	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5277	0.0851	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6128	FALSE	462	80	0	856	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	48	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.4085	0.0255	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.434	FALSE	499	1288	110	792	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	161	MT-ND4	1149	chrM:10908:+	MT-ND4L	5493	chrM:10584:+	INCL_NON_REF_SPLICE	YES	5	0	0.97	1	0.034	1.3703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	1.4043	FALSE	344	826	44	306	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	164	MT-ND4	1299	chrM:11058:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	YES	27	0	0.86	1	0.0255	1.3959	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	1.4214	FALSE	344	827	44	306	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	159	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	3	0	0.98	1	0.034	1.3533	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	1.3873	FALSE	344	826	44	306	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	13	117	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	2794	0	0.04	1	0.1106	0.9958	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	1.1064	FALSE	344	827	44	306	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	33	10	PTMA	6556	chr2:232577189:+	HMGB2	13573	chr4:174253322:-	INCL_NON_REF_SPLICE	YES	5100	1706	0.01	0.02	0.2809	0.0851	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.366	TRUE	0	0	0	4	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	34	4	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3115	0	0.01	1	0.2894	0.034	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.3234	FALSE	13	9	0	364	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	33	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2809	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2809	TRUE	46	1352	75	139	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	114	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	4	0	0.97	1	0.0255	0.9703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.9958	FALSE	344	826	44	306	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFKBIZ--ANKRD28	26	8	NFKBIZ	1194	chr3:101547028:+	ANKRD28	24443	chr3:15807819:-	ONLY_REF_SPLICE	YES	16	28	0.68	0.55	0.2213	0.0681	HGNC_GENEFAM,NFKBIZ->NFKB_inhibitor_zeta,chr3:101546835-101579866:+,ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.68	0.2894	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OR51S1--TP53I11	27	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2298	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2298	TRUE	402	216	10	229	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	23	8	PTMA	6060	chr2:232576693:+	HMGB2	13600	chr4:174253295:-	INCL_NON_REF_SPLICE	YES	6498	1555	0	0.02	0.1958	0.0681	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.2639	TRUE	0	0	0	4	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	19	18	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.1617	0.1532	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.3149	FALSE	499	1288	110	792	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	21	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1787	0.034	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.2127	FALSE	499	1288	110	792	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	58	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	1	30	0.98	0.68	0.0511	0.4937	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	0.98	0.5448	FALSE	189	492	56	216	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	63	MT-ND4	1519	chrM:11278:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	YES	313	0	0.18	1	0.034	0.5362	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.5702	FALSE	344	827	44	306	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	61	MT-CO3	1126	chrM:9332:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	1	19	0.98	0.77	0.034	0.5192	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.98	0.5532	FALSE	189	492	56	216	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	59	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	6	1	0.91	0.98	0.034	0.5022	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.98	0.5362	FALSE	189	492	56	216	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	62	MT-CO3	1140	chrM:9346:+	MT-ATP6	4937	chrM:8679:+	INCL_NON_REF_SPLICE	YES	1	24	0.98	0.73	0.0255	0.5277	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.98	0.5532	FALSE	189	492	56	216	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	41	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	6796	0	0.01	1	0.0681	0.349	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.4171	FALSE	328	800	43	304	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	57	MT-CO3	1089	chrM:9295:+	MT-ATP6	5156	chrM:8898:+	INCL_NON_REF_SPLICE	YES	2	26	0.97	0.7	0.0255	0.4852	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.97	0.5107	FALSE	189	492	56	216	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	56	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	2	2	0.97	0.97	0.0255	0.4766	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	0.97	0.5021	FALSE	189	492	56	216	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TL1--MT-RNR2	3	54	MT-TL1	1086	chrM:3315:+	MT-RNR2	5568	chrM:3163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0.4596	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4851	FALSE	7	521	16	32	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	15	5	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3138	0	0.01	1	0.1277	0.0426	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1703	FALSE	13	9	0	364	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	48	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.034	0.4085	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.4425	FALSE	344	821	44	306	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	9	23	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	197	0	0.14	1	0.0766	0.1958	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.2724	FALSE	344	827	44	306	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	45	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.0255	0.383	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.4085	FALSE	189	492	56	216	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	26	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0596	0.2213	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.2809	FALSE	499	1288	110	792	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	41	MT-CO3	1039	chrM:9245:+	MT-ATP6	5090	chrM:8832:+	INCL_NON_REF_SPLICE	YES	0	18	1	0.71	0.0255	0.349	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.3745	FALSE	189	492	56	216	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	12	3	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	7663	9731	0	0	0.1021	0.0255	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1276	FALSE	63	17	1	58	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	11	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0936	0.0596	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1532	FALSE	462	80	0	856	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	10	10	PTMA	6552	chr2:232577185:+	HMGB2	13568	chr4:174253327:-	INCL_NON_REF_SPLICE	YES	5308	1654	0	0.01	0.0851	0.0851	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1702	TRUE	0	0	0	4	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	11	2	PTMA	6024	chr2:232576657:+	HMGB2	13597	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	5721	1625	0	0.01	0.0936	0.017	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1106	TRUE	0	0	0	4	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	23	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9	0	0.76	1	0.0426	0.1958	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.2384	FALSE	344	826	44	306	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0596	0.1192	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.1788	FALSE	499	1288	110	792	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	9	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	31	5	0.28	0.71	0.0766	0.0255	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.71	0.1021	FALSE	59	21	0	114	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	9	3	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1605	28	0.01	0.3	0.0766	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.3	0.1021	FALSE	216	209	16	281	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	9	2	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	7375	9642	0	0	0.0766	0.017	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0936	FALSE	63	17	1	58	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	18	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	8	0	0.74	1	0.0426	0.1532	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	0.1958	FALSE	344	826	44	306	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBBP8--PIEZO2	9	1	RBBP8	28529	chr18:20596887:+	PIEZO2	36178	chr18:10979658:-	ONLY_REF_SPLICE	YES	119	0	0.08	1	0.0766	0.0085	RBBP8->Oncogene{Bushman},chr18:20378224-20606451:+,retinoblastoma_binding_protein_8,PIEZO2->chr18:10666480-11148587:-,piezo_type_mechanosensitive_ion_channel_component_2	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0851	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	7	7	PTMA	6060	chr2:232576693:+	HMGB2	13633	chr4:174253262:-	INCL_NON_REF_SPLICE	YES	6498	1381	0	0.01	0.0596	0.0596	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1192	TRUE	0	0	0	4	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1DP3--FRY	8	2	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	1	1	0.91	0.91	0.0681	0.017	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.91	0.0851	FALSE	20	24	2	21	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	10	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0.0851	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1362	FALSE	499	1288	110	792	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	7	6	PTMA	6062	chr2:232576695:+	HMGB2	13638	chr4:174253257:-	INCL_NON_REF_SPLICE	YES	6608	1343	0	0.01	0.0596	0.0511	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1107	TRUE	0	0	0	4	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	13	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0426	0.1106	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.1532	FALSE	189	492	56	216	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	8	1	PTMA	6024	chr2:232576657:+	HMGB2	13633	chr4:174253262:-	INCL_NON_REF_SPLICE	YES	5721	1381	0	0.01	0.0681	0.0085	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0766	FALSE	0	0	0	4	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	8	1	PTMA	6535	chr2:232577168:+	HMGB2	13652	chr4:174253243:-	INCL_NON_REF_SPLICE	YES	5547	1099	0	0.01	0.0681	0.0085	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0766	FALSE	0	0	0	4	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	8	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0681	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0681	FALSE	59	21	0	114	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0681	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0681	FALSE	462	80	0	856	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	7	3	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	7378	9608	0	0	0.0596	0.0255	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0851	FALSE	63	17	1	58	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	7	3	MT-ATP6	1158	chrM:8684:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	7862	9799	0	0	0.0596	0.0255	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0851	FALSE	63	17	1	58	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0596	0.0255	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.0851	FALSE	189	492	56	216	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EDEM1--ARL8B	7	2	EDEM1	4114	chr3:5236966:+	ARL8B	24923	chr3:5212188:+	ONLY_REF_SPLICE	YES	126	165	0.07	0.05	0.0596	0.017	LOCAL_REARRANGEMENT:+:[6735],EDEM1->ER_degradation_enhancing_alpha-mannosidase_like_protein_1,chr3:5229331-5261642:+,ARL8B->ADP_ribosylation_factor_like_GTPase_8B,chr3:5163905-5222596:+	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.07	0.0766	TRUE	0	0	0	1	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	7	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	26	4	0.24	0.67	0.0596	0.0085	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.67	0.0681	FALSE	59	21	0	114	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	13	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.034	0.1106	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.1446	FALSE	189	492	56	216	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	17	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0255	0.1447	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.1702	FALSE	344	821	44	306	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	1	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0596	0.0085	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0681	FALSE	344	821	44	306	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	7	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0596	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0596	TRUE	0	0	0	100	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIPEPP3--ABHD12	7	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0596	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0596	TRUE	64	202	9	44	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TL1--MT-RNR2	5	8	MT-TL1	1104	chrM:3333:+	MT-RNR2	5603	chrM:3198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0.0681	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1107	FALSE	7	521	16	32	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7854	28	0	0.24	0.0511	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.24	0.0766	FALSE	231	217	16	283	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	6	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	6	0	0.65	1	0.0426	0.0511	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	0.0937	FALSE	189	492	56	216	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	6	1	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	6478	0	0	1	0.0511	0.0085	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0596	FALSE	63	17	1	58	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	7337	2	0	0.78	0.0511	0.0085	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.78	0.0596	FALSE	230	193	14	283	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0511	FALSE	189	492	56	216	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	4	8	PTMA	6054	chr2:232576687:+	HMGB2	13597	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	6079	1625	0	0.01	0.034	0.0681	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1021	TRUE	0	0	0	4	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	7	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.034	0.0596	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.0936	FALSE	499	1288	110	792	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.034	0.0511	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.0851	FALSE	189	492	56	216	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	10	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	13	0	0.5	1	0.0255	0.0851	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.1106	FALSE	344	827	44	306	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	2	0.78	0.78	0.0426	0.017	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.78	0.0596	FALSE	515	4851	409	746	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	4	5	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	2	1	0.82	0.9	0.034	0.0426	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.9	0.0766	TRUE	0	1	0	84	1	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	4	5	MT-ATP6	1303	chrM:8829:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	10244	0	0	1	0.034	0.0426	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0766	FALSE	63	17	1	58	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8268	3	0	0.67	0.0426	0.0085	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.67	0.0511	FALSE	231	205	14	283	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	9	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0.0766	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1021	FALSE	499	1288	110	792	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0426	FALSE	499	1288	110	792	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	3	8	PTMA	6068	chr2:232576701:+	HMGB2	13567	chr4:174253328:-	INCL_NON_REF_SPLICE	NO	6955	1646	0	0.01	0.0255	0.0681	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0936	FALSE	0	0	0	4	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	3	8	PTMA	6539	chr2:232577172:+	HMGB2	13620	chr4:174253275:-	INCL_NON_REF_SPLICE	YES	5399	1323	0	0.01	0.0255	0.0681	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0936	FALSE	0	0	0	4	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	5	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0426	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0426	FALSE	16	356	14	466	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLCO4A1--CABLES2	5	0	SLCO4A1	1109	chr20:61273905:+	CABLES2	19429	chr20:60971648:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0426	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,CABLES2->Cdk5_and_Abl_enzyme_substrate_2,chr20:60963688-60982341:-	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0426	TRUE	0	0	0	2	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	4	2	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	34	4	0.15	0.6	0.034	0.017	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.6	0.051	FALSE	59	21	0	114	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4XP8	4	1	IGH@	97640	chr14:106321054:-	TMSB4XP8	131814	chr4:91760251:-	INCL_NON_REF_SPLICE	YES	4515	0	0	1	0.034	0.0085	IGH@->Oncogene{Bushman},TMSB4XP8->chr4:91759652-91760263:-,thymosin_beta_4,_X-linked_pseudogene_8	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0425	FALSE	0	0	0	3	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	3	5	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	1	0.89	0.89	0.0255	0.0426	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.89	0.0681	TRUE	0	1	0	84	1	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1122	chrM:8648:+	MT-RNR2	4703	chrM:1692:+	INCL_NON_REF_SPLICE	YES	6624	0	0	1	0.034	0.0085	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0425	FALSE	63	17	1	58	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	5	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	23	0	0.26	1	0.0255	0.0426	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.0681	FALSE	213	207	15	279	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	1	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	9859	0	0	1	0.034	0.0085	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0425	FALSE	231	217	16	283	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	7347	28	0	0.15	0.034	0.0085	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.15	0.0425	FALSE	230	198	14	283	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.034	0.0085	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0425	FALSE	344	821	44	306	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	1	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.034	0.0085	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0425	FALSE	499	1288	110	792	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LSP1--CD81	4	0	LSP1	1228	chr11:1874427:+	CD81	29503	chr11:2411642:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	LSP1->chr11:1874200-1913497:+,chr13:25591541-25591675:+,lymphocyte-specific_protein_1,CD81->CD81_molecule,chr11:2397407-2418649:+	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	3	4	MT-ATP6	1516	chrM:9042:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	YES	3759	9543	0	0	0.0255	0.034	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0595	FALSE	63	17	1	58	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1121	chrM:8647:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	FALSE	63	17	1	58	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	FALSE	189	492	56	216	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	8208	0	0	1	0.0255	0.034	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0595	FALSE	231	217	16	283	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1172	chrM:8698:+	MT-RNR2	5313	chrM:2302:+	INCL_NON_REF_SPLICE	YES	8118	11212	0	0	0.0255	0.0255	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.051	FALSE	63	17	1	58	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	3	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	NO	10	3	0.33	0.62	0.0255	0.017	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.62	0.0425	FALSE	59	21	0	114	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	3	2	PTMA	6024	chr2:232576657:+	HMGB2	13600	chr4:174253295:-	INCL_NON_REF_SPLICE	YES	5721	1555	0	0	0.0255	0.017	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0425	FALSE	0	0	0	4	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	1	0.71	0.83	0.0255	0.017	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.83	0.0425	FALSE	407	2205	196	549	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	6011	0	0	1	0.0255	0.0085	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.034	FALSE	63	17	1	58	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	7256	3	0	0.57	0.0255	0.0085	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.57	0.034	FALSE	230	198	14	283	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	8231	1400	0	0	0.0255	0.0085	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.034	FALSE	231	217	16	283	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFKBIZ--ANKRD28	1	9	NFKBIZ	1194	chr3:101547028:+	ANKRD28	23224	chr3:15823162:-	ONLY_REF_SPLICE	YES	16	31	0.38	0.24	0.0085	0.0766	HGNC_GENEFAM,NFKBIZ->NFKB_inhibitor_zeta,chr3:101546835-101579866:+,ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.38	0.0851	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HMGN2--GSTP1	3	0	HMGN2	1164	chr1:26799104:+	GSTP1	8063	chr11:67351605:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	GTEx&tcga_normals:1/3694=0.03%,HMGN2->chr1:26798941-26802463:+,high_mobility_group_nucleosomal_binding_domain_2,GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	TRUE	0	0	0	2	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	FALSE	63	17	1	58	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1244	chrM:11003:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	FALSE	231	204	14	283	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MS4A1	3	0	MT-ND5	1665	chrM:13001:+	MS4A1	5969	chr11:60223381:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MS4A1->chr11:60223225-60238233:+,membrane_spanning_4-domains_A1	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	FALSE	0	0	0	3	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	FALSE	499	1288	110	792	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	FALSE	499	1288	110	792	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	FALSE	499	1288	110	792	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4584	chrM:14684:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	FALSE	499	1288	110	792	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	2	3	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	37	43	0.12	0.1	0.017	0.0255	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.12	0.0425	TRUE	105	90	7	93	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	2	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	62	71	0.05	0.04	0.017	0.0085	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.05	0.0255	TRUE	3	48	0	26	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARFRP1--EEF1D	2	0	ARFRP1	2669	chr20:62337709:-	EEF1D	29253	chr8:144663498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	ARFRP1->ADP_ribosylation_factor_related_protein_1,ArcherDX_panel,FoundationOne_panel,chr20:62329996-62339377:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	0	0	0	2	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C10orf137--UROS	2	0	C10orf137	3677	chr10:127411703:+	UROS	45296	chr10:127477574:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	LOCAL_INVERSION:+:-:[24434],C10orf137->Oncogene{Bushman},chr10:127408084-127452712:+,UROS->chr10:127477146-127511817:-,uroporphyrinogen_III_synthase	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf25--DAZAP1	2	0	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	6	7	1	24	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	2	0	FBRSL1	2311	chr12:133067447:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	1	8	0	1	2	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LSP1--SEPT9	2	0	LSP1	1228	chr11:1874427:+	SEPT9	56743	chr17:75486824:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	LSP1->chr11:1874200-1913497:+,chr13:25591541-25591675:+,lymphocyte-specific_protein_1,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT1--KDM4B	2	0	MLLT1	5710	chr19:6226988:-	KDM4B	41567	chr19:5143978:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1,KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPW--PHF20	2	0	NPW	1177	chr16:2060103:+	PHF20	9882	chr20:34389413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	NPW->chr16:2059927-2070756:+,neuropeptide_W,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	1	10	0	18	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-18I14.10--FZR1	2	0	RP11-18I14.10	6611	chr10:104215184:+	FZR1	20579	chr19:3534419:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	RP11-18I14.10->chr10:104209574-104220863:+,FZR1->chr19:3506271-3538328:+,fizzy/cell_division_cycle_20_related_1	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLCO4A1--EEF1D	2	0	SLCO4A1	1109	chr20:61273905:+	EEF1D	29184	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	0	0	0	2	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF37A--SDCCAG8	2	0	ZNF37A	3297	chr10:38385560:+	SDCCAG8	25187	chr1:243468015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	ZNF37A->chr10:38383264-38414472:+,zinc_finger_protein_37A,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFKBIZ--ANKRD28	1	3	NFKBIZ	1194	chr3:101547028:+	ANKRD28	26591	chr3:15793327:-	ONLY_REF_SPLICE	NO	16	27	0.2	0.13	0.0085	0.0255	HGNC_GENEFAM,NFKBIZ->NFKB_inhibitor_zeta,chr3:101546835-101579866:+,ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.2	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1DP3--FRY	1	2	EEF1DP3	3331	chr13:32520318:+	FRY	12212	chr13:32612567:+	ONLY_REF_SPLICE	YES	1	2	0.75	0.6	0.0085	0.017	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.75	0.0255	FALSE	1	3	0	6	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0085	0.017	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.0255	FALSE	275	511	55	178	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EDEM1--ARL8B	1	1	EDEM1	1669	chr3:5229999:+	ARL8B	24923	chr3:5212188:+	ONLY_REF_SPLICE	NO	93	165	0.02	0.01	0.0085	0.0085	LOCAL_REARRANGEMENT:+:[6735],EDEM1->ER_degradation_enhancing_alpha-mannosidase_like_protein_1,chr3:5229331-5261642:+,ARL8B->ADP_ribosylation_factor_like_GTPase_8B,chr3:5163905-5222596:+	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.017	FALSE	0	0	0	2	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1DP3--FRY	1	1	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	3	1	0.4	0.67	0.0085	0.0085	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.67	0.017	FALSE	18	26	2	21	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LSP1--CCND1	1	1	LSP1	1228	chr11:1874427:+	CCND1	25235	chr11:69462762:+	ONLY_REF_SPLICE	YES	164	1446	0.01	0	0.0085	0.0085	LSP1->chr11:1874200-1913497:+,chr13:25591541-25591675:+,lymphocyte-specific_protein_1,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000220
MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--FUS	1	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	351	765	0.01	0	0.0085	0.0085	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	MINO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.017	FALSE	5	20	0	32	0	FALSE	ACH-000220
SW780_URINARY_TRACT	RNF213--BAIAP2	77	29	RNF213	47750	chr17:78335688:+	BAIAP2	84268	chr17:79027468:+	ONLY_REF_SPLICE	YES	30	37	0.78	0.74	0.5027	0.1893	{Klijn_CCL:Urinary_Bladder=1},RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+	SW780_URINARY_TRACT	0.74	0.78	0.692	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	FGFR3--BAIAP2L1	34	18	FGFR3	9864	chr4:1808661:+	BAIAP2L1	16891	chr7:97991744:-	ONLY_REF_SPLICE	YES	17	2	0.75	0.96	0.222	0.1175	Cosmic{samples=31,mutations=1,papers=3},{Klijn_CCL:Urinary_Bladder=1},FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-	SW780_URINARY_TRACT	0.75	0.96	0.3395	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	GSN--NMRK1	21	12	GSN	9717	chr9:124043840:+	NMRK1	39938	chr9:77698066:-	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.1371	0.0783	GSN->Oncogene{Bushman},chr9:123970072-124095121:+,gelsolin,NMRK1->chr9:77675489-77703133:-,nicotinamide_riboside_kinase_1	SW780_URINARY_TRACT	0.97	1	0.2154	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	MT-TA--MT-TC	21	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1371	0.0196	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW780_URINARY_TRACT	1	1	0.1567	FALSE	462	80	0	856	0	FALSE	ACH-000384
SW780_URINARY_TRACT	NRIP1--AF127936.7	12	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0783	0.0065	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW780_URINARY_TRACT	1	1	0.0848	FALSE	292	1546	117	613	0	FALSE	ACH-000384
SW780_URINARY_TRACT	RP4-717I23.3--EVI5	8	6	RP4-717I23.3	5620	chr1:93802934:-	EVI5	47264	chr1:92979527:-	ONLY_REF_SPLICE	YES	3	2	0.82	0.88	0.0522	0.0392	RP4-717I23.3->chr1:93727743-93811582:-,EVI5->chr1:92974253-93257961:-,ecotropic_viral_integration_site_5	SW780_URINARY_TRACT	0.82	0.88	0.0914	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	TIMM23B--PARGP1	9	1	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0588	0.0065	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	SW780_URINARY_TRACT	1	1	0.0653	TRUE	393	2105	140	19	0	FALSE	ACH-000384
SW780_URINARY_TRACT	RABGAP1--PCSK5	7	7	RABGAP1	3561	chr9:125719488:+	PCSK5	43675	chr9:78682871:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0457	0.0457	RABGAP1->RAB_GTPase_activating_protein_1,chr9:125703112-125867145:+,PCSK5->chr9:78505560-78977255:+,proprotein_convertase_subtilisin/kexin_type_5	SW780_URINARY_TRACT	0.93	1	0.0914	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	PSMD11--RHOT1	7	6	PSMD11	14684	chr17:30807649:+	RHOT1	26578	chr17:30509776:+	ONLY_REF_SPLICE	YES	52	9	0.2	0.59	0.0457	0.0392	PSMD11->chr17:30771279-30810336:+,proteasome_26S_subunit,_non-ATPase_11,RHOT1->chr17:30469473-30580393:+,ras_homolog_family_member_T1	SW780_URINARY_TRACT	0.2	0.59	0.0849	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	PPP1R12A--RP1-78O14.1	6	8	PPP1R12A	17469	chr12:80199372:-	RP1-78O14.1	41348	chr12:79787705:-	ONLY_REF_SPLICE	YES	16	0	0.47	1	0.0392	0.0522	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,RP1-78O14.1->chr12:79734985-79897176:-	SW780_URINARY_TRACT	0.47	1	0.0914	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	TIMM23--RP11-464F9.1	8	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0522	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SW780_URINARY_TRACT	1	1	0.0522	TRUE	519	3926	326	965	0	FALSE	ACH-000384
SW780_URINARY_TRACT	CTNNA3--LIPK	7	2	CTNNA3	13854	chr10:68381450:-	LIPK	41073	chr10:90499753:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0457	0.0131	{Klijn_CCL:Urinary_Bladder=1},CTNNA3->catenin_alpha_3,chr10:67672276-69455927:-,LIPK->chr10:90484301-90512543:+,lipase_family_member_K	SW780_URINARY_TRACT	1	1	0.0588	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	USP54--VSTM4	6	0	USP54	1017	chr10:75385695:-	VSTM4	48587	chr10:50256629:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54,VSTM4->V-set_and_transmembrane_domain_containing_4,chr10:50222290-50323554:-	SW780_URINARY_TRACT	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	C15orf57--CBX3	4	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	9	8	0.53	0.56	0.0261	0.0392	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SW780_URINARY_TRACT	0.53	0.56	0.0653	TRUE	267	562	48	632	0	FALSE	ACH-000384
SW780_URINARY_TRACT	RBM6--DOCK3	5	1	RBM6	8238	chr3:50012825:+	DOCK3	39179	chr3:51101879:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0.0065	{Klijn_CCL:Urinary_Bladder=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	SW780_URINARY_TRACT	1	1	0.0391	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RBM6--DOCK3	4	2	RBM6	10420	chr3:50036946:+	DOCK3	39179	chr3:51101879:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0.0131	{Klijn_CCL:Urinary_Bladder=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	SW780_URINARY_TRACT	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	C15orf57--CBX3	3	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	9	8	0.47	0.5	0.0196	0.0326	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SW780_URINARY_TRACT	0.47	0.5	0.0522	TRUE	267	562	48	632	0	FALSE	ACH-000384
SW780_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0261	0.0065	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW780_URINARY_TRACT	0.83	1	0.0326	FALSE	515	4851	409	746	0	FALSE	ACH-000384
SW780_URINARY_TRACT	BRI3BP--UBC	4	0	BRI3BP	2347	chr12:125497122:+	UBC	14535	chr12:125399161:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	SW780_URINARY_TRACT	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	CDCP1--MCM3AP	4	0	CDCP1	9002	chr3:45135030:-	MCM3AP	39739	chr21:47674750:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	CDCP1->CUB_domain_containing_protein_1,chr3:45123770-45187914:-,MCM3AP->chr21:47655047-47706211:-,minichromosome_maintenance_complex_component_3_associated_protein	SW780_URINARY_TRACT	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	GTF3C2--VANGL1	4	0	GTF3C2	14948	chr2:27549586:-	VANGL1	30304	chr1:116234727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	GTF3C2->chr2:27548716-27579868:-,general_transcription_factor_IIIC_subunit_2,VANGL1->VANGL_planar_cell_polarity_protein_1,chr1:116184574-116240845:+	SW780_URINARY_TRACT	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	IQCD--SOD1	4	0	IQCD	3149	chr12:113645264:-	SOD1	16602	chr21:33040788:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	IQCD->IQ_motif_containing_D,chr12:113633246-113658899:-,SOD1->chr21:33031935-33041244:+,superoxide_dismutase_1,_soluble	SW780_URINARY_TRACT	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RP5-1028K7.2--SAT2	4	0	RP5-1028K7.2	3361	chr17:38679813:+	SAT2	8908	chr17:7531184:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	RP5-1028K7.2->chr17:38673278-38683254:+,SAT2->chr17:7529552-7531194:-,spermidine/spermine_N1-acetyltransferase_family_member_2	SW780_URINARY_TRACT	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	SRCAP--MFSD8	4	0	SRCAP	17889	chr16:30735306:+	MFSD8	47059	chr4:128841337:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	SRCAP->Snf2-related_CREBBP_activator_protein,chr16:30709530-30755602:+,MFSD8->chr4:128838960-128887150:-,major_facilitator_superfamily_domain_containing_8	SW780_URINARY_TRACT	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ZNF488--CTNNA3	3	3	ZNF488	5671	chr10:48364901:+	CTNNA3	23532	chr10:68535282:-	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0196	0.0196	ZNF488->chr10:48355024-48373866:+,zinc_finger_protein_488,CTNNA3->catenin_alpha_3,chr10:67672276-69455927:-	SW780_URINARY_TRACT	0.55	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ASAP1--CNOT7	3	1	ASAP1	7774	chr8:131370263:-	CNOT7	56886	chr8:17090046:-	ONLY_REF_SPLICE	YES	3	62	0.57	0.06	0.0196	0.0065	ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,CNOT7->CCR4-NOT_transcription_complex_subunit_7,chr8:17086737-17104387:-	SW780_URINARY_TRACT	0.06	0.57	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	KRT19--KIDINS220	3	1	KRT19	1388	chr17:39684173:-	KIDINS220	44677	chr2:8870568:-	INCL_NON_REF_SPLICE	YES	1108	15	0	0.21	0.0196	0.0065	KRT19->chr17:39679869-39684560:-,keratin_19,KIDINS220->chr2:8865408-8977760:-,kinase_D-interacting_substrate_220kDa	SW780_URINARY_TRACT	0	0.21	0.0261	FALSE	0	0	0	1	0	FALSE	ACH-000384
SW780_URINARY_TRACT	ABCA7--TAGLN	3	0	ABCA7	16548	chr19:1056419:+	TAGLN	32167	chr11:117075251:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	ABCA7->ATP_binding_cassette_subfamily_A_member_7,chr19:1040102-1065571:+,TAGLN->Oncogene{Bushman},chr11:117070037-117075498:+,transgelin	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ARL8B--TOP2B	3	0	ARL8B	6918	chr3:5216099:+	TOP2B	14846	chr3:25686961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	ARL8B->ADP_ribosylation_factor_like_GTPase_8B,chr3:5163905-5222596:+,TOP2B->Oncogene{Bushman},chr3:25639475-25706398:-,topoisomerase_(DNA)_II_beta	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	BCL2L1--COQ9	3	0	BCL2L1	4780	chr20:30253445:-	COQ9	17334	chr16:57493551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-,COQ9->chr16:57481337-57495187:+,coenzyme_Q9	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	CRYZL1--RECQL5	3	0	CRYZL1	18433	chr21:34968037:-	RECQL5	26414	chr17:73662651:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	CRYZL1->chr21:34961647-35016232:-,crystallin_zeta_like_1,RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	DDOST--LMTK3	3	0	DDOST	4659	chr1:20981131:-	LMTK3	25319	chr19:48988626:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	DDOST->chr1:20978270-20988000:-,dolichyl-diphosphooligosaccharide--protein_glycosyltransferase_non-catalytic_subunit,LMTK3->chr19:48988528-49016446:-,lemur_tyrosine_kinase_3	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	DYNC1H1--TKT	3	0	DYNC1H1	41552	chr14:102500755:+	TKT	71560	chr3:53262347:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	DYNC1H1->chr14:102430865-102517129:+,dynein_cytoplasmic_1_heavy_chain_1,TKT->chr3:53258723-53290068:-,transketolase	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	HIST1H2AC--FIP1L1	3	0	HIST1H2AC	1489	chr6:26124861:+	FIP1L1	16397	chr4:54292039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	HIST1H2AC->chr6:26124373-26139344:+,histone_cluster_1,_H2ac,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	HOOK2--CIAO1	3	0	HOOK2	7962	chr19:12884931:-	CIAO1	27247	chr2:96938552:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2,CIAO1->chr2:96931870-96939087:+,cytosolic_iron-sulfur_assembly_component_1	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	IST1--TBRG4	3	0	IST1	14851	chr16:71956525:+	TBRG4	29800	chr7:45143785:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	IST1->IST1,_ESCRT-III_associated_factor,chr16:71879899-71962913:+,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	KDELR1--MT-ND4L	3	0	KDELR1	6755	chr19:48886124:-	MT-ND4L	10054	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	KDELR1->KDEL_endoplasmic_reticulum_protein_retention_receptor_1,chr19:48885827-48894810:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW780_URINARY_TRACT	1	1	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000384
SW780_URINARY_TRACT	LDB1--MT-CO2	3	0	LDB1	5479	chr10:103869724:-	MT-CO2	11092	chrM:7791:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	LDB1->LIM_domain_binding_1,Oncogene{Bushman},chr10:103867317-103880210:-,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SW780_URINARY_TRACT	1	1	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000384
SW780_URINARY_TRACT	LIN52--NPC2	3	0	LIN52	6088	chr14:74567941:+	NPC2	15676	chr14:74953139:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	LIN52->chr14:74551499-74667936:+,lin-52_DREAM_MuvB_core_complex_component,NPC2->NPC_intracellular_cholesterol_transporter_2,chr14:74942895-74960880:-	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	MLXIP--AMIGO2	3	0	MLXIP	8484	chr12:122618099:+	AMIGO2	26604	chr12:47471525:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	MLXIP->MLX_interacting_protein,chr12:122516628-122631894:+,AMIGO2->adhesion_molecule_with_Ig-like_domain_2,chr12:47469490-47473734:-	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	OGG1--TSIX	3	0	OGG1	7294	chr3:9800115:+	TSIX	47552	chrX:73040895:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	OGG1->8-oxoguanine_DNA_glycosylase,chr3:9791628-9829903:+,TSIX->TSIX_transcript,_XIST_antisense_RNA,chrX:73012040-73049066:+	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	PRDX4--ALS2CL	3	0	PRDX4	4042	chrX:23689729:+	ALS2CL	31095	chr3:46713439:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	PRDX4->chrX:23682379-23704516:+,peroxiredoxin_4,ALS2CL->ALS2_C-terminal_like,Oncogene{Bushman},chr3:46710487-46735194:-	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	PRKRIP1--SRRT	3	0	PRKRIP1	9230	chr7:102045130:+	SRRT	18373	chr7:100478906:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,SRRT->chr7:100472733-100486285:+,serrate,_RNA_effector_molecule	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RAD21--SKP1	3	0	RAD21	15647	chr8:117859827:-	SKP1	29025	chr5:133494277:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-,SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RERE--CAPN8	3	0	RERE	8908	chr1:8674620:-	CAPN8	58128	chr1:223718212:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,CAPN8->calpain_8,chr1:223711349-223853436:-	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RP11-123O10.4--GRIP1	3	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SW780_URINARY_TRACT	1	1	0.0196	FALSE	416	2512	207	587	0	FALSE	ACH-000384
SW780_URINARY_TRACT	RPS6--LUC7L3	3	0	RPS6	2493	chr9:19378760:-	LUC7L3	18701	chr17:48823174:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	GTEx&tcga_normals:2/3694=0.05%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,LUC7L3->LUC7_like_3_pre-mRNA_splicing_factor,chr17:48796905-48833574:+	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	SAE1--IARS	3	0	SAE1	11514	chr19:47673180:+	IARS	41404	chr9:95014167:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	SERF2--TM9SF4	3	0	SERF2	6121	chr15:44086005:+	TM9SF4	33463	chr20:30753039:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	SERF2->chr15:44069285-44094787:+,small_EDRK-rich_factor_2,TM9SF4->chr20:30697309-30755061:+,transmembrane_9_superfamily_member_4	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	SLC27A4--TTPAL	3	0	SLC27A4	9466	chr9:131117715:+	TTPAL	17379	chr20:43108893:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	SLC27A4->chr9:131102925-131123749:+,solute_carrier_family_27_member_4,TTPAL->chr20:43104526-43123244:+,tocopherol_(alpha)_transfer_protein-like	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	SLC7A1--SNX12	3	0	SLC7A1	18710	chr13:30084863:-	SNX12	27553	chrX:70279555:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1,SNX12->chrX:70279094-70288273:-,sorting_nexin_12	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	TCF19--TOP1	3	0	TCF19	5124	chr6:31131181:+	TOP1	30356	chr20:39750686:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	TCF19->chr6:31126319-31134936:+,transcription_factor_19,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	TMEM38A--EEF1A1P5	3	0	TMEM38A	4257	chr19:16793319:+	EEF1A1P5	12668	chr9:135896222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	TMEM38A->chr19:16771938-16800840:+,transmembrane_protein_38A,EEF1A1P5->chr9:135894816-135896553:+,eukaryotic_translation_elongation_factor_1_alpha_1_pseudogene_5	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	TPP1--SUMF2	3	0	TPP1	6072	chr11:6635621:-	SUMF2	16284	chr7:56144475:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	TPP1->chr11:6634000-6640692:-,tripeptidyl_peptidase_1,SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2	SW780_URINARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0131	0.0131	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW780_URINARY_TRACT	0.8	1	0.0262	FALSE	125	705	46	456	0	FALSE	ACH-000384
SW780_URINARY_TRACT	FHOD3--SLC25A4	2	1	FHOD3	1287	chr18:33877963:+	SLC25A4	41621	chr4:186065918:+	ONLY_REF_SPLICE	YES	0	51	1	0.06	0.0131	0.0065	{Klijn_CCL:Urinary_Bladder=1},FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,SLC25A4->chr4:186064395-186071536:+,solute_carrier_family_25_member_4	SW780_URINARY_TRACT	0.06	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ABCD3--CAMSAP2	2	0	ABCD3	5849	chr1:94930429:+	CAMSAP2	32975	chr1:200776504:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+,CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	AC097499.1--PDS5B	2	0	AC097499.1	1402	chr2:126468947:+	PDS5B	6836	chr13:33222891:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	AC097499.1->chr2:126468546-126523419:+,PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	AP001432.14--TTC3	2	0	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	15	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ARHGAP32--ZNF431	2	0	ARHGAP32	3404	chr11:129034214:-	ZNF431	43961	chr19:21365426:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	ARHGAP32->Rho_GTPase_activating_protein_32,chr11:128834955-129149219:-,ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ARHGEF7--THOC2	2	0	ARHGEF7	29143	chr13:111940790:+	THOC2	68641	chrX:122756711:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,THOC2->THO_complex_2,chrX:122734412-122866906:-	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	CACUL1--ADD3	2	0	CACUL1	12855	chr10:120445495:-	ADD3	30360	chr10:111860383:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	CACUL1->CDK2_associated_cullin_domain_1,chr10:120433679-120514761:-,ADD3->Oncogene{Bushman},adducin_3,chr10:111756126-111895323:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	CEP89--DHDH	2	0	CEP89	1156	chr19:33462742:-	DHDH	30574	chr19:49439289:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	CEP89->centrosomal_protein_89,chr19:33369902-33462897:-,DHDH->chr19:49436939-49448226:+,dihydrodiol_dehydrogenase	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	CRHR1--UGCG	2	0	CRHR1	2396	chr17:43707524:+	UGCG	20113	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	CRHR1->chr17:43699267-43913194:+,corticotropin_releasing_hormone_receptor_1,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	DDI2--GANAB	2	0	DDI2	2439	chr1:15953293:+	GANAB	26543	chr11:62407203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	DDI2->DNA_damage_inducible_1_homolog_2,chr1:15943995-15995539:+,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	DLC1--CUL2	2	0	DLC1	10024	chr8:13133771:-	CUL2	37294	chr10:35360267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,CUL2->chr10:35297479-35379570:-,cullin_2	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ETF1--CNST	2	0	ETF1	1204	chr5:137878786:-	CNST	18330	chr1:246754814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	ETF1->chr5:137841784-137878989:-,eukaryotic_translation_termination_factor_1,CNST->chr1:246729746-246831886:+,consortin,_connexin_sorting_protein	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	EXOC4--TNPO3	2	0	EXOC4	25520	chr7:133502297:+	TNPO3	44767	chr7:128658211:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,TNPO3->chr7:128594948-128695198:-,transportin_3	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	GPRC5A--CSDE1	2	0	GPRC5A	1883	chr12:13044598:+	CSDE1	29259	chr1:115273043:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	GPRC5A->G_protein-coupled_receptor_class_C_group_5_member_A,chr12:13043716-13070871:+,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	GSN--NMRK1	2	0	GSN	8624	chr9:124030497:+	NMRK1	39938	chr9:77698066:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	GSN->Oncogene{Bushman},chr9:123970072-124095121:+,gelsolin,NMRK1->chr9:77675489-77703133:-,nicotinamide_riboside_kinase_1	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	HNRNPR--FAM214A	2	0	HNRNPR	6441	chr1:23650049:-	FAM214A	36922	chr15:52885933:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,FAM214A->chr15:52873514-53002014:-,family_with_sequence_similarity_214_member_A	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	HSP90B1--NMI	2	0	HSP90B1	10960	chr12:104337097:+	NMI	26377	chr2:152128246:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	HSP90B1->Oncogene{Bushman},chr12:104323885-104347423:+,heat_shock_protein_90kDa_beta_family_member_1,NMI->N-myc_and_STAT_interactor,chr2:152126979-152146571:-	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	LIMK1--CLIP2	2	0	LIMK1	3210	chr7:73500174:+	CLIP2	39563	chr7:73803433:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	LIMK1->LIM_domain_kinase_1,Oncogene{Bushman},chr7:73497263-73536855:+,CLIP2->CAP-Gly_domain_containing_linker_protein_2,chr7:73703805-73820273:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	LSR--NEK9	2	0	LSR	4450	chr19:35749967:+	NEK9	35496	chr14:75551389:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	LSR->chr19:35739233-35758867:+,lipolysis_stimulated_lipoprotein_receptor,NEK9->NIMA_related_kinase_9,chr14:75548822-75594047:-	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	LZTS2--BAIAP2	2	0	LZTS2	1617	chr10:102756991:+	BAIAP2	25864	chr17:79058632:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	LZTS2->chr10:102756375-102767593:+,leucine_zipper,_putative_tumor_suppressor_2,BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	MDN1--ENOSF1	2	0	MDN1	9520	chr6:90491118:-	ENOSF1	117371	chr18:674406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	MDN1->chr6:90352218-90529442:-,midasin_AAA_ATPase_1,ENOSF1->chr18:670324-712676:-,enolase_superfamily_member_1	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	MECOM--FBXO34	2	0	MECOM	3693	chr3:169098975:-	FBXO34	38665	chr14:55817099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,FBXO34->F-box_protein_34,chr14:55738021-55828636:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	PITPNB--MICAL3	2	0	PITPNB	4210	chr22:28306952:-	MICAL3	22186	chr22:18389652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	PITPNB->chr22:28247657-28316122:-,phosphatidylinositol_transfer_protein_beta,MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	PPP1R12A--PAWR	2	0	PPP1R12A	17469	chr12:80199372:-	PAWR	62613	chr12:79968847:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[82466],PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator	SW780_URINARY_TRACT	1	1	0.0131	FALSE	0	0	0	1	0	FALSE	ACH-000384
SW780_URINARY_TRACT	PPP1R12A--SETD5	2	0	PPP1R12A	17469	chr12:80199372:-	SETD5	41384	chr3:9466151:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,SETD5->SET_domain_containing_5,chr3:9439299-9520924:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	PTPRF--PPCS	2	0	PTPRF	21449	chr1:44069204:+	PPCS	39307	chr1:42922918:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F,PPCS->chr1:42921788-42939056:+,phosphopantothenoylcysteine_synthetase	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RBM6--DOCK3	2	0	RBM6	3185	chr3:50000118:+	DOCK3	43555	chr3:51183980:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	{Klijn_CCL:Urinary_Bladder=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RBPMS--VCL	2	0	RBPMS	1731	chr8:30242674:+	VCL	56203	chr10:75877781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	RBPMS->RNA_binding_protein_with_multiple_splicing,chr8:30241944-30429778:+,VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RECQL4--PPP1R16A	2	0	RECQL4	6205	chr8:145738025:-	PPP1R16A	19185	chr8:145726225:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	LOCAL_INVERSION:-:+:[9163],RECQL4->Oncogene{Bushman},RecQ_like_helicase_4,chr8:145736667-145743229:-,PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RP11-162A12.2--ZNF761	2	0	RP11-162A12.2	1280	chr18:74533972:-	ZNF761	9577	chr19:53949480:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	RP11-162A12.2->chr18:74506688-74534251:-,ZNF761->chr19:53935227-53961515:+,zinc_finger_protein_761	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RP11-435B5.4--ANO6	2	0	RP11-435B5.4	2843	chr1:143465380:-	ANO6	43259	chr12:45810482:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	RP11-435B5.4->chr1:143354963-143467632:-,ANO6->anoctamin_6,chr12:45609770-45834187:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RP11-758M4.1--PCNXL4	2	0	RP11-758M4.1	2222	chr8:75525175:+	PCNXL4	23007	chr14:60582437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	RP11-758M4.1->chr8:75512010-75735548:+,PCNXL4->chr14:60558629-60635851:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	SEC63--SERINC1	2	0	SEC63	1304	chr6:108279090:-	SERINC1	33910	chr6:122779826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	SEC63->SEC63_homolog,_protein_translocation_regulator,chr6:108188960-108279393:-,SERINC1->chr6:122764499-122792967:-,serine_incorporator_1	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	STK4--ERI1	2	0	STK4	15640	chr20:43653771:+	ERI1	35517	chr8:8887302:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	STK4->Oncogene{Bushman},chr20:43595115-43708600:+,serine/threonine_kinase_4,ERI1->chr8:8859657-8974256:+,exoribonuclease_1	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	TBK1--ATF2	2	0	TBK1	1308	chr12:64845967:+	ATF2	36945	chr2:175962321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	TMEM123--YAP1	2	0	TMEM123	5695	chr11:102319543:-	YAP1	21477	chr11:102076624:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	{Klijn_CCL:Head-Neck=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	3	0	2	0	TRUE	ACH-000384
SW780_URINARY_TRACT	VAC14--GIN1	2	0	VAC14	1365	chr16:70834700:-	GIN1	36185	chr5:102423876:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	VAC14->Oncogene{Bushman},Vac14,_PIKFYVE_complex_component,chr16:70721342-70835064:-,GIN1->chr5:102421704-102455855:-,gypsy_retrotransposon_integrase_1	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ZNF26--TRAFD1	2	0	ZNF26	1509	chr12:133563459:+	TRAFD1	17996	chr12:112572542:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	ZNF26->chr12:133562951-133589154:+,zinc_finger_protein_26,TRAFD1->TRAF-type_zinc_finger_domain_containing_1,chr12:112563305-112591407:+	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ZRANB3--HS6ST1	2	0	ZRANB3	1110	chr2:136288697:-	HS6ST1	42168	chr2:129026444:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3,HS6ST1->chr2:128994290-129076151:-,heparan_sulfate_6-O-sulfotransferase_1	SW780_URINARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ZNF488--CTNNA3	1	3	ZNF488	4155	chr10:48359854:+	CTNNA3	23532	chr10:68535282:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0065	0.0196	ZNF488->chr10:48355024-48373866:+,zinc_finger_protein_488,CTNNA3->catenin_alpha_3,chr10:67672276-69455927:-	SW780_URINARY_TRACT	0.67	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	PPP1R12A--RP1-78O14.1	1	2	PPP1R12A	15835	chr12:80201006:-	RP1-78O14.1	41348	chr12:79787705:-	ONLY_REF_SPLICE	NO	20	0	0.13	1	0.0065	0.0131	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,RP1-78O14.1->chr12:79734985-79897176:-	SW780_URINARY_TRACT	0.13	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	ZNF488--CTNNA3	1	2	ZNF488	2651	chr10:48357057:+	CTNNA3	23532	chr10:68535282:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0065	0.0131	ZNF488->chr10:48355024-48373866:+,zinc_finger_protein_488,CTNNA3->catenin_alpha_3,chr10:67672276-69455927:-	SW780_URINARY_TRACT	0.75	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	CBX5--TTC3	1	1	CBX5	1095	chr12:54673792:-	TTC3	40262	chr21:38480692:+	ONLY_REF_SPLICE	YES	1	14	0.67	0.12	0.0065	0.0065	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},CBX5->chr12:54624724-54673886:-,chromobox_5,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	SW780_URINARY_TRACT	0.12	0.67	0.013	TRUE	0	0	0	1	0	TRUE	ACH-000384
SW780_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0065	0.0065	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW780_URINARY_TRACT	1	1	0.013	FALSE	407	2205	196	549	0	FALSE	ACH-000384
DMS454_LUNG	MTSS1--RP11-1082L8.3	148	139	MTSS1	1606	chr8:125740125:-	RP11-1082L8.3	30931	chr8:125852504:-	ONLY_REF_SPLICE	YES	892	0	0.24	1	1.581	1.4848	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,RP11-1082L8.3->chr8:125847126-125869758:-	DMS454_LUNG	0.24	1	3.0658	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	RAB7A--RAB11A	133	1	RAB7A	3543	chr3:128516912:+	RAB11A	19126	chr15:66169819:+	INCL_NON_REF_SPLICE	NO	1364	1195	0.09	0.1	1.4207	0.0107	GTEx&tcga_normals:19/3694=0.51%,GTEx_v2:{count=24;pct=0.28%;dist=Skin_-_Sun_Exposed_(Lower_leg)=6,Thyroid=3,Artery_-_Tibial=2,Adipose_-_Subcutaneous=2,Heart_-_Left_Ventricle=2,Breast_-_Mammary_Tissue=1,Brain_-_Hypothalamus=1,Brain_-_Frontal_Cortex_(BA9)=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1,Whole_Blood=1,Brain_-_Cerebellum=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},HGNC_GENEFAM,PROTCLUST,RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,RAB11A->RAB11A,_member_RAS_oncogene_family,chr15:66018392-66184329:+	DMS454_LUNG	0.09	0.1	1.4314	TRUE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	PTPRN2--CADM2	122	38	PTPRN2	1231	chr7:158380250:-	CADM2	36682	chr3:85932441:+	ONLY_REF_SPLICE	YES	26	6	0.86	0.96	1.3032	0.4059	{Klijn_CCL:Lung=1},PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,CADM2->cell_adhesion_molecule_2,chr3:85008132-86123579:+	DMS454_LUNG	0.86	0.96	1.7091	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	PTPRK--THEMIS	99	46	PTPRK	7241	chr6:128643184:-	THEMIS	61436	chr6:128040968:-	ONLY_REF_SPLICE	YES	38	0	0.79	1	1.0575	0.4914	{Klijn_CCL:Lung=1},NEIGHBORS[50148],PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,THEMIS->chr6:128029217-128239776:-,thymocyte_selection_associated	DMS454_LUNG	0.79	1	1.5489	FALSE	0	1	0	1	0	FALSE	ACH-000844
DMS454_LUNG	RP11-64B16.2--SEL1L2	75	58	RP11-64B16.2	1211	chr12:119632865:+	SEL1L2	15371	chr20:13869160:-	INCL_NON_REF_SPLICE	YES	31	1	0.81	0.99	0.8012	0.6196	RP11-64B16.2->chr12:119632655-119633199:+,SEL1L2->SEL1L2_ERAD_E3_ligase_adaptor_subunit,chr20:13829893-13977089:-	DMS454_LUNG	0.81	0.99	1.4208	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	KANSL1--ARL17B	70	62	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	95	167	0.58	0.44	0.7478	0.6623	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	DMS454_LUNG	0.44	0.58	1.4101	TRUE	181	1564	124	196	0	FALSE	ACH-000844
DMS454_LUNG	TIMM23B--LINC00843	58	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6196	0.3098	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DMS454_LUNG	1	1	0.9294	TRUE	508	994	45	981	0	FALSE	ACH-000844
DMS454_LUNG	MTSS1--RP11-1082L8.3	27	129	MTSS1	1606	chr8:125740125:-	RP11-1082L8.3	30935	chr8:125852500:-	INCL_NON_REF_SPLICE	YES	892	0	0.15	1	0.2884	1.378	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,RP11-1082L8.3->chr8:125847126-125869758:-	DMS454_LUNG	0.15	1	1.6664	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MT-ND6--MT-TE	51	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.93	1	0.5448	0.0107	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS454_LUNG	0.93	1	0.5555	FALSE	499	1288	110	792	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND6--MT-TE	49	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5234	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS454_LUNG	1	1	0.5234	FALSE	499	1288	110	792	0	FALSE	ACH-000844
DMS454_LUNG	MEMO1--KCNB1	44	15	MEMO1	2044	chr2:32235256:-	KCNB1	22339	chr20:47991529:-	ONLY_REF_SPLICE	YES	34	2	0.63	0.97	0.47	0.1602	MEMO1->chr2:32090129-32236299:-,mediator_of_cell_motility_1,KCNB1->chr20:47980414-48099184:-,potassium_voltage-gated_channel_subfamily_B_member_1	DMS454_LUNG	0.63	0.97	0.6302	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MT-ND6--MT-ND5	47	3	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	2970	1	0.02	0.5021	0.032	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	DMS454_LUNG	0.02	1	0.5341	FALSE	101	855	57	72	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND1	44	4	MT-ND4	2043	chrM:11802:+	MT-ND1	5745	chrM:3673:+	INCL_NON_REF_SPLICE	NO	21781	14113	0	0	0.47	0.0427	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	DMS454_LUNG	0	0	0.5127	FALSE	51	52	3	16	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND6--MT-TE	45	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4807	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS454_LUNG	1	1	0.4807	FALSE	499	1288	110	792	0	FALSE	ACH-000844
DMS454_LUNG	MT-TA--MT-TC	39	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4166	0.0534	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DMS454_LUNG	1	1	0.47	FALSE	462	80	0	856	0	FALSE	ACH-000844
DMS454_LUNG	RPN2--ENTPD4	33	21	RPN2	13657	chr20:35854205:+	ENTPD4	33758	chr8:23294771:-	ONLY_REF_SPLICE	YES	967	51	0.05	0.51	0.3525	0.2243	RPN2->chr20:35806813-35870022:+,ribophorin_II,ENTPD4->chr8:23243296-23315208:-,ectonucleoside_triphosphate_diphosphohydrolase_4	DMS454_LUNG	0.05	0.51	0.5768	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	C4BPA--C4BPB	35	11	C4BPA	7414	chr1:207300240:+	C4BPB	21582	chr1:207269867:+	ONLY_REF_SPLICE	YES	92	142	0.33	0.24	0.3739	0.1175	PROTCLUST,{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[4269],C4BPA->chr1:207277607-207318317:+,complement_component_4_binding_protein_alpha,C4BPB->chr1:207262187-207273338:+,complement_component_4_binding_protein_beta	DMS454_LUNG	0.24	0.33	0.4914	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MACF1--RPS27A	30	28	MACF1	115549	chr1:39934404:+	RPS27A	126148	chr2:55459944:+	ONLY_REF_SPLICE	YES	411	30	0.12	0.66	0.3205	0.2991	{Klijn_CCL:Lung=1},MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	DMS454_LUNG	0.12	0.66	0.6196	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	TIMM23--RP11-464F9.1	34	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	257	7	0.12	0.84	0.3632	0.0214	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DMS454_LUNG	0.12	0.84	0.3846	TRUE	519	3926	326	965	0	FALSE	ACH-000844
DMS454_LUNG	R3HDM2--PPP6R3	32	6	R3HDM2	2356	chr12:57789532:-	PPP6R3	49093	chr11:68337216:+	ONLY_REF_SPLICE	YES	8	328	0.83	0.1	0.3418	0.0641	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3	DMS454_LUNG	0.1	0.83	0.4059	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	SMG1--ANKS4B	25	27	SMG1	45034	chr16:18852887:-	ANKS4B	72069	chr16:21261052:+	ONLY_REF_SPLICE	YES	73	217	0.42	0.19	0.2671	0.2884	SMG1->SMG1_phosphatidylinositol_3-kinase-related_kinase,chr16:18816175-18937776:-,ANKS4B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_4B,chr16:21244986-21263750:+	DMS454_LUNG	0.19	0.42	0.5555	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MTO1--KCNQ5	26	20	MTO1	9658	chr6:74192343:+	KCNQ5	42974	chr6:73900296:+	ONLY_REF_SPLICE	YES	84	0	0.35	1	0.2777	0.2136	{Klijn_CCL:Lung=1},MTO1->chr6:74171301-74218959:+,mitochondrial_tRNA_translation_optimization_1,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	DMS454_LUNG	0.35	1	0.4913	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	USP32--DHX40P1	26	12	USP32	3790	chr17:58469243:-	DHX40P1	54042	chr17:58054131:-	ONLY_REF_SPLICE	YES	22	60	0.63	0.39	0.2777	0.1282	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,DHX40P1->DEAH-box_helicase_40_pseudogene_1,chr17:58053370-58079745:-	DMS454_LUNG	0.39	0.63	0.4059	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	LINC01014--KCNMB2	24	15	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	29	16	0.57	0.71	0.2564	0.1602	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	DMS454_LUNG	0.57	0.71	0.4166	FALSE	12	33	18	33	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	24	4	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	108	0	0.21	1	0.2564	0.0427	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	0.21	1	0.2991	FALSE	344	827	44	306	0	FALSE	ACH-000844
DMS454_LUNG	C15orf57--CBX3	19	19	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	98	29	0.28	0.57	0.203	0.203	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DMS454_LUNG	0.28	0.57	0.406	TRUE	267	562	48	632	0	FALSE	ACH-000844
DMS454_LUNG	RPH3AL--TENM1	21	11	RPH3AL	22520	chr17:69414:-	TENM1	43094	chrX:123699410:-	ONLY_REF_SPLICE	YES	2	1	0.94	0.97	0.2243	0.1175	RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains),TENM1->chrX:123509753-124097666:-,teneurin_transmembrane_protein_1	DMS454_LUNG	0.94	0.97	0.3418	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MT-TA--MT-TC	20	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2136	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DMS454_LUNG	1	1	0.2136	FALSE	462	80	0	856	0	FALSE	ACH-000844
DMS454_LUNG	WTAPP1--YAP1	13	23	WTAPP1	10546	chr11:102703637:+	YAP1	18475	chr11:101984875:+	ONLY_REF_SPLICE	YES	0	6	1	0.86	0.1389	0.2457	WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	DMS454_LUNG	0.86	1	0.3846	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	LINC01014--KCNMB2	14	13	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	29	16	0.48	0.63	0.1496	0.1389	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	DMS454_LUNG	0.48	0.63	0.2885	FALSE	11	60	26	37	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	5	47	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	26	1	0.67	0.98	0.0534	0.5021	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	0.67	0.98	0.5555	FALSE	344	826	44	306	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	4	48	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	29	0	0.64	1	0.0427	0.5127	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	0.64	1	0.5554	FALSE	344	826	44	306	0	FALSE	ACH-000844
DMS454_LUNG	MET--CAV1	13	11	MET	4452	chr7:116340338:+	CAV1	32070	chr7:116166579:+	ONLY_REF_SPLICE	YES	212	30	0.1	0.44	0.1389	0.1175	{Klijn_CCL:Head-Neck=1},MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	DMS454_LUNG	0.1	0.44	0.2564	TRUE	0	0	0	2	0	TRUE	ACH-000844
DMS454_LUNG	WTAPP1--C11orf70	7	34	WTAPP1	10546	chr11:102703637:+	C11orf70	19231	chr11:101946604:+	ONLY_REF_SPLICE	YES	0	17	1	0.71	0.0748	0.3632	WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,C11orf70->chr11:101918174-101955291:+,chromosome_11_open_reading_frame_70	DMS454_LUNG	0.71	1	0.438	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	4	45	MT-ND4	1110	chrM:10869:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	14	1	0.78	0.98	0.0427	0.4807	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	0.78	0.98	0.5234	FALSE	344	826	44	306	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	3	48	MT-ND4	1168	chrM:10927:+	MT-ND4L	5460	chrM:10551:+	INCL_NON_REF_SPLICE	YES	32	0	0.61	1	0.032	0.5127	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	0.61	1	0.5447	FALSE	344	826	44	306	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	4	44	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	12	1	0.8	0.98	0.0427	0.47	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	0.8	0.98	0.5127	FALSE	344	826	44	306	0	FALSE	ACH-000844
DMS454_LUNG	RHOT2--PIGQ	13	7	RHOT2	5420	chr16:722505:+	PIGQ	15863	chr16:624250:+	INCL_NON_REF_SPLICE	YES	116	63	0.15	0.24	0.1389	0.0748	LOCAL_REARRANGEMENT:+:[83950],RHOT2->chr16:718086-724174:+,ras_homolog_family_member_T2,PIGQ->chr16:616995-634136:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_Q	DMS454_LUNG	0.15	0.24	0.2137	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	RPH3AL--TENM1	11	15	RPH3AL	23800	chr17:65445:-	TENM1	43094	chrX:123699410:-	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.1175	0.1602	RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains),TENM1->chrX:123509753-124097666:-,teneurin_transmembrane_protein_1	DMS454_LUNG	0.96	1	0.2777	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND1	13	5	MT-ND4	2221	chrM:11980:+	MT-ND1	5862	chrM:3790:+	INCL_NON_REF_SPLICE	YES	7134	12338	0	0	0.1389	0.0534	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	DMS454_LUNG	0	0	0.1923	FALSE	51	52	3	16	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	11	12	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	19948	1	0	0.96	0.1175	0.1282	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	0	0.96	0.2457	FALSE	328	800	43	304	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	7	28	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	1	0.85	0.97	0.0748	0.2991	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	0.85	0.97	0.3739	FALSE	344	821	44	306	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND6--MT-TE	12	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.1282	0.0534	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS454_LUNG	0.89	1	0.1816	FALSE	499	1288	110	792	0	FALSE	ACH-000844
DMS454_LUNG	RAB7A--RAB11A	12	1	RAB7A	4916	chr3:128525231:+	RAB11A	19055	chr15:66169748:+	INCL_NON_REF_SPLICE	NO	1209	1524	0.01	0.01	0.1282	0.0107	GTEx&tcga_normals:19/3694=0.51%,GTEx_v2:{count=24;pct=0.28%;dist=Skin_-_Sun_Exposed_(Lower_leg)=6,Thyroid=3,Artery_-_Tibial=2,Adipose_-_Subcutaneous=2,Heart_-_Left_Ventricle=2,Breast_-_Mammary_Tissue=1,Brain_-_Hypothalamus=1,Brain_-_Frontal_Cortex_(BA9)=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1,Whole_Blood=1,Brain_-_Cerebellum=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},HGNC_GENEFAM,PROTCLUST,RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,RAB11A->RAB11A,_member_RAS_oncogene_family,chr15:66018392-66184329:+	DMS454_LUNG	0.01	0.01	0.1389	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	FGF14-IT1--FGF14	8	9	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	1	41	0.94	0.29	0.0855	0.0961	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	DMS454_LUNG	0.29	0.94	0.1816	TRUE	71	201	23	28	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND6--MT-TE	9	5	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.78	1	0.0961	0.0534	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS454_LUNG	0.78	1	0.1495	FALSE	499	1288	110	792	0	FALSE	ACH-000844
DMS454_LUNG	MT-CO3--MT-ATP6	9	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	12	13	0.52	0.5	0.0961	0.0427	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS454_LUNG	0.5	0.52	0.1388	FALSE	189	492	56	216	0	FALSE	ACH-000844
DMS454_LUNG	PDE6B--PPP2R2D	10	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1068	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	DMS454_LUNG	1	1	0.1068	TRUE	7	65	3	22	0	FALSE	ACH-000844
DMS454_LUNG	MT-CO3--MT-ATP6	9	3	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	8	1	0.6	0.0961	0.032	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS454_LUNG	0.6	1	0.1281	FALSE	189	492	56	216	0	FALSE	ACH-000844
DMS454_LUNG	MT-CO3--MT-ATP6	4	22	MT-CO3	1468	chrM:9674:+	MT-ATP6	4778	chrM:8520:+	INCL_NON_REF_SPLICE	YES	9	0	0.74	1	0.0427	0.235	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS454_LUNG	0.74	1	0.2777	FALSE	189	492	56	216	0	FALSE	ACH-000844
DMS454_LUNG	MT-ATP6--MT-CO1	9	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	15865	39413	0	0	0.0961	0.0107	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DMS454_LUNG	0	0	0.1068	FALSE	183	104	9	328	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ATP8	9	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0961	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DMS454_LUNG	1	1	0.0961	FALSE	230	193	14	283	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	8	4	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	47	0	0.2	1	0.0855	0.0427	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	0.2	1	0.1282	FALSE	344	826	44	306	0	FALSE	ACH-000844
DMS454_LUNG	RP11-58C22.1--CTD-2336H13.2	9	0	RP11-58C22.1	2618	chr16:76669520:+	CTD-2336H13.2	5594	chr16:76770214:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0961	0	GTEx_FI:{Testis=[count:22=pct:21.0]},RP11-58C22.1->chr16:76587314-76669520:+,CTD-2336H13.2->chr16:76770239-76962066:+	DMS454_LUNG	1	1	0.0961	TRUE	5	3	0	6	0	FALSE	ACH-000844
DMS454_LUNG	CAMK2B--RABEP2	8	2	CAMK2B	3127	chr7:44364956:-	RABEP2	44428	chr16:28926103:-	ONLY_REF_SPLICE	YES	1	86	0.91	0.1	0.0855	0.0214	CAMK2B->Oncogene{Bushman},calcium/calmodulin_dependent_protein_kinase_II_beta,chr7:44256749-44374176:-,RABEP2->chr16:28915742-28947847:-,rabaptin,_RAB_GTPase_binding_effector_protein_2	DMS454_LUNG	0.1	0.91	0.1069	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	3	21	MT-ND4	1519	chrM:11278:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	YES	1309	1	0.02	0.96	0.032	0.2243	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	0.02	0.96	0.2563	FALSE	344	827	44	306	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND6--MT-TE	8	1	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0855	0.0107	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS454_LUNG	0.82	1	0.0962	FALSE	499	1288	110	792	0	FALSE	ACH-000844
DMS454_LUNG	MT-CO3--MT-ATP6	3	20	MT-CO3	1457	chrM:9663:+	MT-ATP6	4751	chrM:8493:+	INCL_NON_REF_SPLICE	YES	11	0	0.68	1	0.032	0.2136	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS454_LUNG	0.68	1	0.2456	FALSE	189	492	56	216	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ATP8	8	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0855	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DMS454_LUNG	1	1	0.0855	FALSE	230	198	14	283	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND6--MT-TE	8	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0855	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS454_LUNG	1	1	0.0855	FALSE	499	1288	110	792	0	FALSE	ACH-000844
DMS454_LUNG	NPM1P24--SET	8	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0855	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DMS454_LUNG	1	1	0.0855	TRUE	0	0	0	434	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	5	11	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	47	1	0.25	0.94	0.0534	0.1175	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	0.25	0.94	0.1709	FALSE	344	826	44	306	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND6--MT-TE	7	3	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0748	0.032	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS454_LUNG	0.83	1	0.1068	FALSE	499	1288	110	792	0	FALSE	ACH-000844
DMS454_LUNG	MT-ATP6--MT-CO1	7	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	15902	38622	0	0	0.0748	0.0107	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DMS454_LUNG	0	0	0.0855	FALSE	183	104	9	328	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND6--MT-TE	6	5	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.73	1	0.0641	0.0534	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS454_LUNG	0.73	1	0.1175	FALSE	499	1288	110	792	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	4	12	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1309	1	0.01	0.94	0.0427	0.1282	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	0.01	0.94	0.1709	FALSE	344	827	44	306	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND5--MT-RNR2	6	4	MT-ND5	2680	chrM:14016:+	MT-RNR2	6360	chrM:2218:+	INCL_NON_REF_SPLICE	YES	1577	15199	0.01	0	0.0641	0.0427	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DMS454_LUNG	0	0.01	0.1068	FALSE	4	13	1	9	0	FALSE	ACH-000844
DMS454_LUNG	GDAP1--RP11-758M4.1	6	3	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	209	13	0.04	0.41	0.0641	0.032	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	DMS454_LUNG	0.04	0.41	0.0961	TRUE	7	28	0	43	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	4	11	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	93	1	0.14	0.94	0.0427	0.1175	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	0.14	0.94	0.1602	FALSE	344	827	44	306	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	5	7	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	50	0	0.19	1	0.0534	0.0748	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	0.19	1	0.1282	FALSE	344	826	44	306	0	FALSE	ACH-000844
DMS454_LUNG	MT-CO3--MT-ATP6	3	14	MT-CO3	1642	chrM:9848:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	0	33	1	0.34	0.032	0.1496	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS454_LUNG	0.34	1	0.1816	FALSE	189	492	56	216	0	FALSE	ACH-000844
DMS454_LUNG	TTF2--PTGFRN	5	6	TTF2	2346	chr1:117605095:+	PTGFRN	38392	chr1:117509533:+	ONLY_REF_SPLICE	YES	67	67	0.14	0.14	0.0534	0.0641	LOCAL_REARRANGEMENT:+:[69945],TTF2->chr1:117602925-117650075:+,transcription_termination_factor,_RNA_polymerase_II,PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor	DMS454_LUNG	0.14	0.14	0.1175	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	ZMAT4--RP11-706J10.1	5	6	ZMAT4	1151	chr8:40755202:-	RP11-706J10.1	19925	chr8:77388181:+	ONLY_REF_SPLICE	YES	15	0	0.42	1	0.0534	0.0641	ZMAT4->chr8:40388109-40755352:-,zinc_finger_matrin-type_4,RP11-706J10.1->chr8:77318889-77436591:+	DMS454_LUNG	0.42	1	0.1175	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MT-ATP6--MT-CO1	5	5	MT-ATP6	1265	chrM:8791:+	MT-CO1	4998	chrM:6220:+	INCL_NON_REF_SPLICE	YES	26240	30877	0	0	0.0534	0.0534	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DMS454_LUNG	0	0	0.1068	FALSE	183	104	9	328	0	FALSE	ACH-000844
DMS454_LUNG	MT-CO3--MT-ATP6	3	13	MT-CO3	1138	chrM:9344:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12	0	0.57	1	0.032	0.1389	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS454_LUNG	0.57	1	0.1709	FALSE	189	492	56	216	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	6	1	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	5	2	0.58	0.78	0.0641	0.0107	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	0.58	0.78	0.0748	FALSE	344	821	44	306	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND6--MT-TE	4	9	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0.0961	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS454_LUNG	1	1	0.1388	FALSE	499	1288	110	792	0	FALSE	ACH-000844
DMS454_LUNG	MT-TA--MT-TC	5	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0.0534	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DMS454_LUNG	1	1	0.1068	FALSE	462	80	0	856	0	FALSE	ACH-000844
DMS454_LUNG	ST3GAL3--FAM76A	5	5	ST3GAL3	3470	chr1:44202051:+	FAM76A	35756	chr1:28087006:+	ONLY_REF_SPLICE	YES	17	49	0.37	0.17	0.0534	0.0534	ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,FAM76A->chr1:28052490-28089633:+,family_with_sequence_similarity_76_member_A	DMS454_LUNG	0.17	0.37	0.1068	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MT-ND3--MT-ATP8	6	0	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DMS454_LUNG	1	1	0.0641	FALSE	351	233	23	137	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	6	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	1	1	0.0641	FALSE	344	821	44	306	0	FALSE	ACH-000844
DMS454_LUNG	EML6--RPN2	5	3	EML6	2172	chr2:54951807:+	RPN2	69442	chr20:35858376:+	ONLY_REF_SPLICE	YES	4	906	0.67	0.01	0.0534	0.032	EML6->chr2:54950636-55199157:+,echinoderm_microtubule_associated_protein_like_6,RPN2->chr20:35806813-35870022:+,ribophorin_II	DMS454_LUNG	0.01	0.67	0.0854	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	3	11	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	6	2	0.7	0.88	0.032	0.1175	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	0.7	0.88	0.1495	FALSE	344	821	44	306	0	FALSE	ACH-000844
DMS454_LUNG	RP11-123O10.4--GRIP1	5	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0534	0.032	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DMS454_LUNG	1	1	0.0854	FALSE	416	2512	207	587	0	FALSE	ACH-000844
DMS454_LUNG	FGF14-IT1--FGF14	3	9	FGF14-IT1	3717	chr13:103018795:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	41	1	0.23	0.032	0.0961	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	DMS454_LUNG	0.23	1	0.1281	TRUE	80	58	2	10	0	FALSE	ACH-000844
DMS454_LUNG	RP11-96H19.1--RP11-446N19.1	4	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.0427	0.0534	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DMS454_LUNG	0.75	1	0.0961	FALSE	515	4851	409	746	0	FALSE	ACH-000844
DMS454_LUNG	SSH3--KDM2A	5	1	SSH3	7062	chr11:67077810:+	KDM2A	17307	chr11:66947550:+	ONLY_REF_SPLICE	YES	48	81	0.11	0.07	0.0534	0.0107	LOCAL_REARRANGEMENT:+:[45361],SSH3->chr11:67070919-67080078:+,slingshot_protein_phosphatase_3,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	DMS454_LUNG	0.07	0.11	0.0641	TRUE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	MT-ATP6--MT-CO1	4	4	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4882	39482	0	0	0.0427	0.0427	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DMS454_LUNG	0	0	0.0854	FALSE	183	104	9	328	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DMS454_LUNG	1	1	0.0534	FALSE	351	233	23	137	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	1	1	0.0534	FALSE	344	821	44	306	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND6--MT-TE	4	4	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0427	0.0427	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS454_LUNG	0.8	1	0.0854	FALSE	499	1288	110	792	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND6--MT-TE	4	4	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.67	1	0.0427	0.0427	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS454_LUNG	0.67	1	0.0854	FALSE	499	1288	110	792	0	FALSE	ACH-000844
DMS454_LUNG	RP11-96H19.1--RP11-446N19.1	3	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.032	0.0855	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DMS454_LUNG	0.79	1	0.1175	FALSE	407	2205	196	549	0	FALSE	ACH-000844
DMS454_LUNG	SMEK1--TTC7B	4	3	SMEK1	5822	chr14:91947920:-	TTC7B	26511	chr14:91211266:-	ONLY_REF_SPLICE	YES	195	13	0.03	0.35	0.0427	0.032	SMEK1->chr14:91923955-91976898:-,TTC7B->chr14:91006932-91282823:-,tetratricopeptide_repeat_domain_7B	DMS454_LUNG	0.03	0.35	0.0747	TRUE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	KANSL1--ARL17B	2	10	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	111	167	0.1	0.07	0.0214	0.1068	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	DMS454_LUNG	0.07	0.1	0.1282	TRUE	105	90	7	93	0	FALSE	ACH-000844
DMS454_LUNG	MT-TA--MT-TC	3	6	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.0641	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DMS454_LUNG	1	1	0.0961	FALSE	462	80	0	856	0	FALSE	ACH-000844
DMS454_LUNG	WTAPP1--C11orf70	4	2	WTAPP1	10546	chr11:102703637:+	C11orf70	20470	chr11:101951946:+	ONLY_REF_SPLICE	YES	0	22	1	0.21	0.0427	0.0214	WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,C11orf70->chr11:101918174-101955291:+,chromosome_11_open_reading_frame_70	DMS454_LUNG	0.21	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	EML6--RPN2	3	5	EML6	2760	chr2:54952395:+	RPN2	69442	chr20:35858376:+	ONLY_REF_SPLICE	YES	2	906	0.8	0.01	0.032	0.0534	EML6->chr2:54950636-55199157:+,echinoderm_microtubule_associated_protein_like_6,RPN2->chr20:35806813-35870022:+,ribophorin_II	DMS454_LUNG	0.01	0.8	0.0854	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ATP8	4	1	MT-ND4	1538	chrM:11297:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	29801	253	0	0.02	0.0427	0.0107	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DMS454_LUNG	0	0.02	0.0534	FALSE	231	217	16	283	0	FALSE	ACH-000844
DMS454_LUNG	RP1-34H18.1--NAV3	4	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0.0107	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	DMS454_LUNG	1	1	0.0534	TRUE	254	575	65	124	0	FALSE	ACH-000844
DMS454_LUNG	RP11-96H19.1--RP11-446N19.1	2	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0214	0.0961	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DMS454_LUNG	1	1	0.1175	FALSE	192	492	57	212	0	FALSE	ACH-000844
DMS454_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS454_LUNG	1	1	0.0427	FALSE	189	492	56	216	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1017	chrM:10776:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DMS454_LUNG	1	1	0.0427	FALSE	230	190	14	283	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DMS454_LUNG	1	1	0.0427	FALSE	230	198	14	283	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	24742	0	0	1	0.032	0.0427	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DMS454_LUNG	0	1	0.0747	FALSE	231	217	16	283	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	1	1	0.0427	FALSE	344	821	44	306	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1007	chrM:10766:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS454_LUNG	1	1	0.0427	FALSE	344	821	44	306	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND5--MT-RNR2	3	4	MT-ND5	1627	chrM:12963:+	MT-RNR2	5825	chrM:1683:+	INCL_NON_REF_SPLICE	YES	7843	0	0	1	0.032	0.0427	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DMS454_LUNG	0	1	0.0747	FALSE	3	12	1	7	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS454_LUNG	1	1	0.0427	FALSE	499	1288	110	792	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1198	chrM:14476:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS454_LUNG	1	1	0.0427	FALSE	499	1288	110	792	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS454_LUNG	1	1	0.0427	FALSE	499	1288	110	792	0	FALSE	ACH-000844
DMS454_LUNG	RP4-758J18.2--CSF3R	4	0	RP4-758J18.2	2749	chr1:1336650:+	CSF3R	8267	chr1:36947138:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	RP4-758J18.2->chr1:1334902-1337426:+,CSF3R->Oncogene{Bushman},chr1:36931644-36948879:-,colony_stimulating_factor_3_receptor	DMS454_LUNG	1	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	VDAC1--CTD-2410N18.5	4	0	VDAC1	1487	chr5:133340338:-	CTD-2410N18.5	16152	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	VDAC1->chr5:133307606-133340824:-,voltage_dependent_anion_channel_1,CTD-2410N18.5->chr5:133502861-133561762:-	DMS454_LUNG	1	1	0.0427	TRUE	0	0	0	6	0	TRUE	ACH-000844
DMS454_LUNG	WTAPP1--RUVBL1	4	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	DMS454_LUNG	1	1	0.0427	TRUE	9	252	6	66	0	FALSE	ACH-000844
DMS454_LUNG	MT-CO3--MT-ATP6	3	3	MT-CO3	1099	chrM:9305:+	MT-ATP6	5328	chrM:9070:+	INCL_NON_REF_SPLICE	YES	0	7	1	0.46	0.032	0.032	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS454_LUNG	0.46	1	0.064	FALSE	189	492	56	216	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND1	3	3	MT-ND4	1544	chrM:11303:+	MT-ND1	5413	chrM:3341:+	INCL_NON_REF_SPLICE	YES	29531	0	0	1	0.032	0.032	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	DMS454_LUNG	0	1	0.064	FALSE	51	52	3	16	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND6--MT-ND5	3	3	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	2932	1	0	0.032	0.032	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	DMS454_LUNG	0	1	0.064	FALSE	101	855	57	72	0	FALSE	ACH-000844
DMS454_LUNG	AP000525.9--LA16c-60G3.6	3	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	7	0	0.42	1	0.032	0.0214	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	DMS454_LUNG	0.42	1	0.0534	TRUE	0	42	0	133	42	FALSE	ACH-000844
DMS454_LUNG	ATP7B--ANO4	3	2	ATP7B	1208	chr13:52585423:-	ANO4	43882	chr12:101413812:+	ONLY_REF_SPLICE	YES	6	1	0.45	0.83	0.032	0.0214	ATP7B->ATPase_copper_transporting_beta,chr13:52506809-52585630:-,ANO4->anoctamin_4,chr12:101111304-101522419:+	DMS454_LUNG	0.45	0.83	0.0534	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	26756	0	0	1	0.032	0.0214	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DMS454_LUNG	0	1	0.0534	FALSE	231	217	16	283	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND5--MT-RNR2	3	2	MT-ND5	2178	chrM:13514:+	MT-RNR2	6360	chrM:2218:+	INCL_NON_REF_SPLICE	YES	6977	15199	0	0	0.032	0.0214	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DMS454_LUNG	0	0	0.0534	FALSE	4	14	1	9	0	FALSE	ACH-000844
DMS454_LUNG	PTPRK--THEMIS	1	10	PTPRK	7241	chr6:128643184:-	THEMIS	62572	chr6:128031161:-	ONLY_REF_SPLICE	YES	38	23	0.22	0.32	0.0107	0.1068	{Klijn_CCL:Lung=1},NEIGHBORS[50148],PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,THEMIS->chr6:128029217-128239776:-,thymocyte_selection_associated	DMS454_LUNG	0.22	0.32	0.1175	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0214	0.0641	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DMS454_LUNG	1	1	0.0855	FALSE	467	2173	244	435	0	FALSE	ACH-000844
DMS454_LUNG	AGBL4--AGBL4-IT1	3	1	AGBL4	3399	chr1:50162985:-	AGBL4-IT1	30507	chr1:49840016:-	ONLY_REF_SPLICE	YES	9	0	0.31	1	0.032	0.0107	NEIGHBORS_OVERLAP:-:-:[97884],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,AGBL4-IT1->AGBL4_intronic_transcript_1,chr1:49839873-49937757:-	DMS454_LUNG	0.31	1	0.0427	FALSE	75	131	5	14	0	FALSE	ACH-000844
DMS454_LUNG	MET--CAV1	1	9	MET	4452	chr7:116340338:+	CAV1	32103	chr7:116166612:+	ONLY_REF_SPLICE	YES	212	31	0.05	0.24	0.0107	0.0961	{Klijn_CCL:Head-Neck=1},MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	DMS454_LUNG	0.05	0.24	0.1068	TRUE	0	0	0	2	0	TRUE	ACH-000844
DMS454_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	19282	39228	0	0	0.032	0.0107	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DMS454_LUNG	0	0	0.0427	FALSE	183	104	9	328	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND1--MT-RNR2	3	1	MT-ND1	1246	chrM:3552:+	MT-RNR2	5019	chrM:1733:+	INCL_NON_REF_SPLICE	YES	9	0	0.31	1	0.032	0.0107	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DMS454_LUNG	0.31	1	0.0427	FALSE	114	26	4	85	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND1--MT-RNR2	3	1	MT-ND1	1227	chrM:3533:+	MT-RNR2	5001	chrM:1715:+	INCL_NON_REF_SPLICE	YES	5	0	0.44	1	0.032	0.0107	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DMS454_LUNG	0.44	1	0.0427	FALSE	114	26	4	85	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	24634	3	0	0.57	0.032	0.0107	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DMS454_LUNG	0	0.57	0.0427	FALSE	231	217	16	283	0	FALSE	ACH-000844
DMS454_LUNG	KCNB1--TGM2	3	0	KCNB1	1734	chr20:48098451:-	TGM2	19211	chr20:36790001:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	KCNB1->chr20:47980414-48099184:-,potassium_voltage-gated_channel_subfamily_B_member_1,TGM2->chr20:36756863-36794980:-,transglutaminase_2	DMS454_LUNG	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS454_LUNG	1	1	0.032	FALSE	189	492	56	216	0	FALSE	ACH-000844
DMS454_LUNG	MT-ND4--MT-ND1	3	0	MT-ND4	1386	chrM:11145:+	MT-ND1	5882	chrM:3810:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	DMS454_LUNG	1	1	0.032	FALSE	51	52	3	16	0	FALSE	ACH-000844
DMS454_LUNG	NSMCE1--CTC-391G2.1	3	0	NSMCE1	1632	chr16:27279484:-	CTC-391G2.1	19287	chr16:23206342:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	NSMCE1->NSE1_homolog,_SMC5-SMC6_complex_component,chr16:27236312-27280115:-,CTC-391G2.1->chr16:23206199-23224425:-	DMS454_LUNG	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	RP11-120D5.1--MID1	2	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	5	0.55	0.55	0.0214	0.0427	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	DMS454_LUNG	0.55	0.55	0.0641	FALSE	16	356	14	466	0	FALSE	ACH-000844
DMS454_LUNG	RP11-127I20.7--GLYR1	3	0	RP11-127I20.7	2116	chr16:4796146:-	GLYR1	15520	chr16:4873908:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:-:[50638],RP11-127I20.7->chr16:4780116-4802566:-,GLYR1->chr16:4853204-4897343:-,glyoxylate_reductase_1_homolog	DMS454_LUNG	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	RP11-319G9.5--WWOX	3	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	DMS454_LUNG	1	1	0.032	FALSE	154	425	28	76	0	FALSE	ACH-000844
DMS454_LUNG	RP11-634B7.4--TRIM58	2	3	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0214	0.032	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	DMS454_LUNG	0.83	1	0.0534	TRUE	158	633	76	73	0	FALSE	ACH-000844
DMS454_LUNG	RP11-141M1.3--STARD13	2	2	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	4	0.57	0.5	0.0214	0.0214	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	DMS454_LUNG	0.5	0.57	0.0428	FALSE	49	120	16	70	0	FALSE	ACH-000844
DMS454_LUNG	AC073283.4--EPCAM	2	1	AC073283.4	1174	chr2:47572040:-	EPCAM	20907	chr2:47606092:+	ONLY_REF_SPLICE	YES	3	2466	0.5	0	0.0214	0.0107	LOCAL_INVERSION:-:+:[84],AC073283.4->chr2:47419544-47572213:-,EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule	DMS454_LUNG	0	0.5	0.0321	FALSE	0	5	0	5	2	FALSE	ACH-000844
DMS454_LUNG	BOD1--NSG2	2	1	BOD1	1461	chr5:173043203:-	NSG2	16753	chr5:173531231:+	ONLY_REF_SPLICE	YES	145	2569	0.02	0	0.0214	0.0107	BOD1->biorientation_of_chromosomes_in_cell_division_1,chr5:173034517-173043663:-,NSG2->chr5:173472607-173670504:+	DMS454_LUNG	0	0.02	0.0321	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	DERA--STRAP	2	1	DERA	8765	chr12:16115881:+	STRAP	26319	chr12:16053881:+	ONLY_REF_SPLICE	YES	624	836	0	0	0.0214	0.0107	LOCAL_REARRANGEMENT:+:[7694],DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase,STRAP->chr12:16035325-16056412:+,serine/threonine_kinase_receptor_associated_protein	DMS454_LUNG	0	0	0.0321	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	EEA1--RP11-654D12.2	1	5	EEA1	6949	chr12:93251051:-	RP11-654D12.2	44152	chr12:90314844:+	ONLY_REF_SPLICE	NO	25	0	0.19	1	0.0107	0.0534	EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,RP11-654D12.2->chr12:90276442-90383066:+	DMS454_LUNG	0.19	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	NELFB--GRIN1	2	1	NELFB	7651	chr9:140161798:+	GRIN1	25154	chr9:140058211:+	ONLY_REF_SPLICE	YES	510	37	0.01	0.07	0.0214	0.0107	LOCAL_REARRANGEMENT:+:[86418],NELFB->chr9:140149625-140167998:+,negative_elongation_factor_complex_member_B,GRIN1->chr9:140032842-140063207:+,glutamate_ionotropic_receptor_NMDA_type_subunit_1	DMS454_LUNG	0.01	0.07	0.0321	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	PTPRN2--CADM2	1	5	PTPRN2	1231	chr7:158380250:-	CADM2	38973	chr3:85961523:+	ONLY_REF_SPLICE	NO	26	195	0.19	0.03	0.0107	0.0534	{Klijn_CCL:Lung=1},PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,CADM2->cell_adhesion_molecule_2,chr3:85008132-86123579:+	DMS454_LUNG	0.03	0.19	0.0641	TRUE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	PTPRN2--CADM2	2	1	PTPRN2	1231	chr7:158380250:-	CADM2	40144	chr3:85984917:+	ONLY_REF_SPLICE	YES	26	281	0.1	0.01	0.0214	0.0107	{Klijn_CCL:Lung=1},PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,CADM2->cell_adhesion_molecule_2,chr3:85008132-86123579:+	DMS454_LUNG	0.01	0.1	0.0321	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	RP11-296O14.3--TNFSF4	2	1	RP11-296O14.3	1985	chr1:173429517:-	TNFSF4	11987	chr1:173157708:-	ONLY_REF_SPLICE	YES	1	6	0.75	0.33	0.0214	0.0107	RP11-296O14.3->chr1:173386932-173430501:-,TNFSF4->chr1:173152873-173176452:-,tumor_necrosis_factor_superfamily_member_4	DMS454_LUNG	0.33	0.75	0.0321	TRUE	0	3	0	3	3	TRUE	ACH-000844
DMS454_LUNG	WTAPP1--C11orf70	2	1	WTAPP1	10546	chr11:102703637:+	C11orf70	21691	chr11:101953802:+	ONLY_REF_SPLICE	YES	0	27	1	0.1	0.0214	0.0107	WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,C11orf70->chr11:101918174-101955291:+,chromosome_11_open_reading_frame_70	DMS454_LUNG	0.1	1	0.0321	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	ACAP3--NOC4L	2	0	ACAP3	1168	chr1:1244822:-	NOC4L	26079	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},ACAP3->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_3,chr1:1227756-1244989:-,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	ACBD6--NSL1	2	0	ACBD6	7351	chr1:180366651:-	NSL1	23449	chr1:212912943:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-,NSL1->NSL1,_MIS12_kinetochore_complex_component,chr1:212899495-212965124:-	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	AP001432.14--TTC3	2	0	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	15	0	TRUE	ACH-000844
DMS454_LUNG	ASPSCR1--CDC14B	2	0	ASPSCR1	6589	chr17:79943483:+	CDC14B	40969	chr9:99278074:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+,CDC14B->cell_division_cycle_14B,chr9:99252523-99382112:-	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	CD99L2--HMGB3	2	0	CD99L2	1295	chrX:150066995:-	HMGB3	22175	chrX:150154068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	LOCAL_INVERSION:-:+:[81693],CD99L2->CD99_molecule_like_2,chrX:149934810-150067289:-,HMGB3->chrX:150148982-150159248:+,high_mobility_group_box_3	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	CERS5--LIMA1	2	0	CERS5	14794	chr12:50528329:-	LIMA1	24670	chr12:50625493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	LOCAL_REARRANGEMENT:-:[8283],CERS5->ceramide_synthase_5,chr12:50523575-50561288:-,LIMA1->LIM_domain_and_actin_binding_1,chr12:50569571-50677329:-	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	CHFR--GAK	2	0	CHFR	2239	chr12:133522207:-	GAK	52006	chr4:877874:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	COBLL1--SLC38A11	1	4	COBLL1	11011	chr2:165600197:-	SLC38A11	52445	chr2:165772483:-	ONLY_REF_SPLICE	YES	116	220	0.04	0.02	0.0107	0.0427	LOCAL_REARRANGEMENT:-:[52507],COBLL1->chr2:165510134-165700189:-,cordon-bleu_WH2_repeat_protein_like_1,SLC38A11->chr2:165752696-165812035:-,solute_carrier_family_38_member_11	DMS454_LUNG	0.02	0.04	0.0534	TRUE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	CSTB--ARRDC3	2	0	CSTB	1242	chr21:45196085:-	ARRDC3	15189	chr5:90669655:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CSTB->Oncogene{Bushman},chr21:45192393-45196326:-,cystatin_B,ARRDC3->arrestin_domain_containing_3,chr5:90664541-90679176:-	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	CTC-260F20.3--DSP	2	0	CTC-260F20.3	1106	chr19:19627141:+	DSP	35196	chr6:7582875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CTC-260F20.3->chr19:19627036-19646885:+,DSP->chr6:7541808-7586950:+,desmoplakin	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	CTD-2017D11.1--POT1	2	0	CTD-2017D11.1	3885	chr19:24232350:+	POT1	30667	chr7:124469396:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CTD-2017D11.1->chr19:24216247-24249711:+,POT1->chr7:124462440-124570037:-,protection_of_telomeres_1	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	CUX1--PCMTD2	2	0	CUX1	24123	chr7:101838883:+	PCMTD2	69488	chr20:62904574:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,PCMTD2->chr20:62887094-62926855:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_2	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	EIF4EBP1--FHOD3	2	0	EIF4EBP1	1378	chr8:37888236:+	FHOD3	35816	chr18:34322700:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	EIF4EBP1->Oncogene{Bushman},chr8:37887859-37917883:+,eukaryotic_translation_initiation_factor_4E_binding_protein_1,FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	ESRP1--PABPC1	2	0	ESRP1	9603	chr8:95680478:+	PABPC1	31500	chr8:101717901:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	HGNC_GENEFAM,ESRP1->chr8:95653302-95719694:+,epithelial_splicing_regulatory_protein_1,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	EXD3--PNPLA7	2	0	EXD3	1149	chr9:140317566:-	PNPLA7	59278	chr9:140358908:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx_FI:{Adrenal_Gland=[count:1=pct:1.2],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Subcutaneous=1,Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:-:[36690],EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,PNPLA7->chr9:140354404-140444986:-,patatin_like_phospholipase_domain_containing_7	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	KIAA1598--PDZD8	2	0	KIAA1598	7331	chr10:118728163:-	PDZD8	34913	chr10:119049859:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx&tcga_normals:4/3694=0.11%,KIAA1598->chr10:118643742-118886097:-,PDZD8->PDZ_domain_containing_8,chr10:119040000-119134978:-	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	LIPI--PAN3	2	0	LIPI	11401	chr21:15516944:-	PAN3	24303	chr13:28830429:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	LIPI->chr21:15481134-15583166:-,lipase_I,PAN3->PAN3_poly(A)_specific_ribonuclease_subunit,chr13:28712643-28869475:+	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MAP7--PEX7	2	0	MAP7	1478	chr6:136871480:-	PEX7	35528	chr6:137219280:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Colon_-_Transverse=1},MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7,PEX7->chr6:137143717-137235075:+,peroxisomal_biogenesis_factor_7	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MBNL1--FGF12	2	0	MBNL1	6738	chr3:152018156:+	FGF12	34131	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MCF2L--CUL4A	2	0	MCF2L	11149	chr13:113623772:+	CUL4A	64905	chr13:113873259:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,CUL4A->chr13:113862552-113919399:+,cullin_4A	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MGAT4A--ATP13A3	2	0	MGAT4A	3575	chr2:99342702:-	ATP13A3	61394	chr3:194126845:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	MGAT4A->chr2:99235569-99347589:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_A,ATP13A3->ATPase_13A3,chr3:194123401-194219093:-	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	MRPS28--POMK	2	0	MRPS28	3779	chr8:80915234:-	POMK	11986	chr8:42957648:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	MRPS28->chr8:80830952-80942524:-,mitochondrial_ribosomal_protein_S28,POMK->chr8:42948658-42978577:+,protein-O-mannose_kinase	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	NAA30--GOLGA8A	2	0	NAA30	2185	chr14:57858446:+	GOLGA8A	29810	chr15:34692960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	NAA30->N(alpha)-acetyltransferase_30,_NatC_catalytic_subunit,chr14:57857262-57882635:+,GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	NAA30--GOLGA8A	2	0	NAA30	2185	chr14:57858446:+	GOLGA8A	19219	chr15:34839183:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	NAA30->N(alpha)-acetyltransferase_30,_NatC_catalytic_subunit,chr14:57857262-57882635:+,GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	NIF3L1--ANAPC4	2	0	NIF3L1	1326	chr2:201754375:+	ANAPC4	24635	chr4:25404593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	NIF3L1->NGG1_interacting_factor_3_like_1,chr2:201754050-201768655:+,ANAPC4->anaphase_promoting_complex_subunit_4,chr4:25378835-25420120:+	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	NRG1-IT1--NRG1-IT2	2	0	NRG1-IT1	3227	chr8:31887975:+	NRG1-IT2	15465	chr8:32144617:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	NEIGHBORS[31907],NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+,NRG1-IT2->chr8:32028898-32145082:+	DMS454_LUNG	1	1	0.0214	FALSE	3	1	0	5	0	FALSE	ACH-000844
DMS454_LUNG	NRG1-IT1--NRG1-IT2	2	0	NRG1-IT1	2253	chr8:31887001:+	NRG1-IT2	15465	chr8:32144617:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	NEIGHBORS[31907],NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+,NRG1-IT2->chr8:32028898-32145082:+	DMS454_LUNG	1	1	0.0214	FALSE	3	1	0	5	0	FALSE	ACH-000844
DMS454_LUNG	PNISR--PSMD13	2	0	PNISR	1117	chr6:99873091:-	PSMD13	24102	chr11:244041:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-,PSMD13->chr11:236546-252983:+,proteasome_26S_subunit,_non-ATPase_13	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	RNF13--CDKN2B-AS1	2	0	RNF13	12719	chr3:149639014:+	CDKN2B-AS1	22762	chr9:22046316:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	RNF13->chr3:149530495-149679926:+,ring_finger_protein_13,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	RP11-417J8.3--YTHDC1	2	0	RP11-417J8.3	3008	chr1:142621059:+	YTHDC1	30550	chr4:69180041:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	RP11-417J8.3->chr1:142618769-142729975:+,YTHDC1->YTH_domain_containing_1,chr4:69176105-69215807:-	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	SCYL3--SLC19A2	2	0	SCYL3	2695	chr1:169857817:-	SLC19A2	26303	chr1:169439424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SCYL3->SCY1_like_pseudokinase_3,chr1:169818772-169863408:-,SLC19A2->chr1:169433147-169455241:-,solute_carrier_family_19_member_2	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	SERINC1--HSF2	2	0	SERINC1	1124	chr6:122792844:-	HSF2	14915	chr6:122733518:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	LOCAL_INVERSION:-:+:[10235],SERINC1->chr6:122764499-122792967:-,serine_incorporator_1,HSF2->chr6:122720691-122754264:+,heat_shock_transcription_factor_2	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	SPAST--ATP9A	2	0	SPAST	1636	chr2:32289315:+	ATP9A	34026	chr20:50292747:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SPAST->chr2:32288680-32382706:+,spastin,ATP9A->ATPase_phospholipid_transporting_9A_(putative),chr20:50213053-50385173:-	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	SUCO--RFWD2	2	0	SUCO	2149	chr1:172502637:+	RFWD2	43960	chr1:176055026:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx_v2:{count=3;pct=0.03%;dist=Adipose_-_Subcutaneous=1,Spleen=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},SUCO->SUN_domain_containing_ossification_factor,chr1:172501489-172580971:+,RFWD2->chr1:175913967-176176629:-,ring_finger_and_WD_repeat_domain_2	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	SYCP2L--ZNF81	2	0	SYCP2L	24854	chr6:10942979:+	ZNF81	42088	chrX:47747398:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SYCP2L->chr6:10748027-10979553:+,synaptonemal_complex_protein_2_like,ZNF81->chrX:47696301-47861960:+,zinc_finger_protein_81	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	TDP1--C6orf89	2	0	TDP1	24473	chr14:90499558:+	C6orf89	38590	chr6:36870056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	TDP1->chr14:90421283-90511106:+,tyrosyl-DNA_phosphodiesterase_1,C6orf89->chr6:36839646-36896740:+,chromosome_6_open_reading_frame_89	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	TNS3--DDC	2	0	TNS3	1508	chr7:47621649:-	DDC	58252	chr7:50571757:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	TNS3->chr7:47314752-47622156:-,tensin_3,DDC->chr7:50526134-50633154:-,dopa_decarboxylase	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	VPS13A--BBS4	2	0	VPS13A	35238	chr9:79923014:+	BBS4	98874	chr15:73023646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	VPS13A->chr9:79792269-80036457:+,vacuolar_protein_sorting_13_homolog_A,BBS4->Bardet-Biedl_syndrome_4,chr15:72978527-73030817:+	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	ZMYND8--GART	2	0	ZMYND8	6534	chr20:45976600:-	GART	40470	chr21:34911662:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,GART->chr21:34876238-34915797:-,phosphoribosylglycinamide_formyltransferase,_phosphoribosylglycinamide_synthetase,_phosphoribosylaminoimidazole_synthetase	DMS454_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	AC007392.3--AC007403.2	1	3	AC007392.3	8704	chr2:66924635:+	AC007403.2	19569	chr2:67172420:+	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0107	0.032	GTEx_FI:{Colon=[count:4=pct:2.1],Prostate=[count:3=pct:4.9],Brain=[count:3=pct:0.5],Uterus=[count:2=pct:4.7],Esophagus=[count:2=pct:0.5],Bladder=[count:1=pct:11.1]},AC007392.3->chr2:66801162-66957289:+,AC007403.2->chr2:67131568-67198594:+	DMS454_LUNG	0.57	1	0.0427	TRUE	1	4	0	3	4	TRUE	ACH-000844
DMS454_LUNG	ATL2--HNRNPLL	1	3	ATL2	1143	chr2:38604285:-	HNRNPLL	26994	chr2:38813023:-	ONLY_REF_SPLICE	NO	128	177	0.03	0.02	0.0107	0.032	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	DMS454_LUNG	0.02	0.03	0.0427	TRUE	0	1	0	4	0	FALSE	ACH-000844
DMS454_LUNG	RPH3AL--TENM1	1	3	RPH3AL	17377	chr17:131559:-	TENM1	43094	chrX:123699410:-	ONLY_REF_SPLICE	NO	16	1	0.2	0.8	0.0107	0.032	RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains),TENM1->chrX:123509753-124097666:-,teneurin_transmembrane_protein_1	DMS454_LUNG	0.2	0.8	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	SMEK1--TTC7B	1	3	SMEK1	5822	chr14:91947920:-	TTC7B	25218	chr14:91239286:-	ONLY_REF_SPLICE	NO	195	14	0.02	0.22	0.0107	0.032	SMEK1->chr14:91923955-91976898:-,TTC7B->chr14:91006932-91282823:-,tetratricopeptide_repeat_domain_7B	DMS454_LUNG	0.02	0.22	0.0427	TRUE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	COBLL1--SLC38A11	1	2	COBLL1	9822	chr2:165617793:-	SLC38A11	52445	chr2:165772483:-	ONLY_REF_SPLICE	YES	24	220	0.11	0.01	0.0107	0.0214	LOCAL_REARRANGEMENT:-:[52507],COBLL1->chr2:165510134-165700189:-,cordon-bleu_WH2_repeat_protein_like_1,SLC38A11->chr2:165752696-165812035:-,solute_carrier_family_38_member_11	DMS454_LUNG	0.01	0.11	0.0321	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	INTS8--DPY19L4	1	2	INTS8	7780	chr8:95844402:+	DPY19L4	43598	chr8:95773928:+	ONLY_REF_SPLICE	YES	163	137	0.02	0.02	0.0107	0.0214	LOCAL_REARRANGEMENT:+:[19475],INTS8->chr8:95825539-95893974:+,integrator_complex_subunit_8,DPY19L4->chr8:95731931-95806064:+,dpy-19_like_4_(C._elegans)	DMS454_LUNG	0.02	0.02	0.0321	TRUE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	PDDC1--CHID1	1	2	PDDC1	3944	chr11:774008:-	CHID1	26269	chr11:884169:-	ONLY_REF_SPLICE	YES	212	899	0.01	0	0.0107	0.0214	LOCAL_REARRANGEMENT:-:[89869],PDDC1->Parkinson_disease_7_domain_containing_1,chr11:767220-777488:-,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	DMS454_LUNG	0	0.01	0.0321	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	POMK--RP11-15G16.1	1	2	POMK	4467	chr8:42958973:+	RP11-15G16.1	11139	chr8:41297356:+	ONLY_REF_SPLICE	YES	81	0	0.04	1	0.0107	0.0214	POMK->chr8:42948658-42978577:+,protein-O-mannose_kinase,RP11-15G16.1->chr8:41292817-41297938:+	DMS454_LUNG	0.04	1	0.0321	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	ABL2--FAM20B	1	1	ABL2	1444	chr1:179198376:-	FAM20B	30518	chr1:179012850:+	ONLY_REF_SPLICE	YES	22	1	0.08	0.67	0.0107	0.0107	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},LOCAL_INVERSION:-:+:[22765],ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,FAM20B->chr1:178994939-179045697:+,family_with_sequence_similarity_20_member_B	DMS454_LUNG	0.08	0.67	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	AL021546.6--METAP2	1	1	AL021546.6	1324	chr12:120876324:+	METAP2	18216	chr12:95897841:+	ONLY_REF_SPLICE	YES	4	484	0.33	0	0.0107	0.0107	AL021546.6->chr12:120876001-120897809:+,METAP2->Oncogene{Bushman},chr12:95867296-95909615:+,methionyl_aminopeptidase_2	DMS454_LUNG	0	0.33	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	ATAD3C--SSU72	1	1	ATAD3C	10760	chr1:1398088:+	SSU72	17928	chr1:1500296:-	ONLY_REF_SPLICE	YES	103	1034	0.02	0	0.0107	0.0107	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[71515],ATAD3C->ATPase_family,_AAA_domain_containing_3C,chr1:1385069-1405538:+,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	DMS454_LUNG	0	0.02	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	ATF2--MTX2	1	1	ATF2	1333	chr2:176032778:-	MTX2	26795	chr2:177161588:+	ONLY_REF_SPLICE	YES	168	641	0.01	0	0.0107	0.0107	ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-,MTX2->chr2:177134123-177202753:+,metaxin_2	DMS454_LUNG	0	0.01	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	CDKAL1--SCGN	1	1	CDKAL1	8586	chr6:20781496:+	SCGN	29374	chr6:25689400:+	ONLY_REF_SPLICE	YES	284	1195	0.01	0	0.0107	0.0107	CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+,SCGN->chr6:25652464-25702011:+,secretagogin,_EF-hand_calcium_binding_protein	DMS454_LUNG	0	0.01	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	CPSF6--HNRNPA2B1	1	1	CPSF6	1170	chr12:69633486:+	HNRNPA2B1	23691	chr7:26237352:-	ONLY_REF_SPLICE	YES	114	2813	0.02	0	0.0107	0.0107	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1	DMS454_LUNG	0	0.02	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	CPSF6--SRSF1	1	1	CPSF6	11046	chr12:69656342:+	SRSF1	22199	chr17:56082402:-	ONLY_REF_SPLICE	YES	238	585	0.01	0	0.0107	0.0107	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	DMS454_LUNG	0	0.01	0.0214	FALSE	2	7	0	12	0	FALSE	ACH-000844
DMS454_LUNG	ENPP6--RP11-290F5.1	1	1	ENPP6	2481	chr4:185138732:-	RP11-290F5.1	20340	chr4:185297698:-	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0107	0.0107	ENPP6->chr4:185009859-185142383:-,ectonucleotide_pyrophosphatase/phosphodiesterase_6,RP11-290F5.1->chr4:185286336-185303460:-	DMS454_LUNG	0.67	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	FAP--PKHD1L1	1	1	FAP	14395	chr2:163066462:-	PKHD1L1	66720	chr8:110450553:+	ONLY_REF_SPLICE	YES	23	57	0.08	0.03	0.0107	0.0107	FAP->chr2:163027194-163101661:-,fibroblast_activation_protein_alpha,PKHD1L1->chr8:110374706-110542559:+,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)-like_1	DMS454_LUNG	0.03	0.08	0.0214	TRUE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	FBRSL1--NOC4L	1	1	FBRSL1	19923	chr12:133153517:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	NO	416	112	0	0.02	0.0107	0.0107	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	DMS454_LUNG	0	0.02	0.0214	FALSE	1	4	0	5	0	FALSE	ACH-000844
DMS454_LUNG	KDM4C--SLC39A10	1	1	KDM4C	23686	chr9:6990524:+	SLC39A10	50049	chr2:196544756:+	ONLY_REF_SPLICE	YES	69	3	0.03	0.4	0.0107	0.0107	KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,SLC39A10->chr2:196440701-196602426:+,solute_carrier_family_39_member_10	DMS454_LUNG	0.03	0.4	0.0214	TRUE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	ME1--PSMB1	1	1	ME1	6828	chr6:84025029:-	PSMB1	22919	chr6:170858201:-	ONLY_REF_SPLICE	YES	288	1350	0.01	0	0.0107	0.0107	ME1->chr6:83920108-84140797:-,malic_enzyme_1,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	DMS454_LUNG	0	0.01	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	MTSS1--RP11-1082L8.4	1	1	MTSS1	1606	chr8:125740125:-	RP11-1082L8.4	31217	chr8:125824429:-	ONLY_REF_SPLICE	YES	892	0	0	1	0.0107	0.0107	LOCAL_REARRANGEMENT:-:[83130],MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,RP11-1082L8.4->chr8:125823860-125827924:-	DMS454_LUNG	0	1	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	NPHP4--CHD5	1	1	NPHP4	12548	chr1:5987709:-	CHD5	68925	chr1:6172337:-	ONLY_REF_SPLICE	YES	38	0	0.05	1	0.0107	0.0107	NPHP4->chr1:5922871-6052533:-,nephronophthisis_4,CHD5->Oncogene{Bushman},chr1:6161853-6240183:-,chromodomain_helicase_DNA_binding_protein_5	DMS454_LUNG	0.05	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	NUDC--NR0B2	1	1	NUDC	3356	chr1:27237726:+	NR0B2	16097	chr1:27238577:-	ONLY_REF_SPLICE	YES	19	1182	0.1	0	0.0107	0.0107	NEIGHBORS_OVERLAP:+:-:[2477],NUDC->chr1:27226729-27273353:+,nudC_nuclear_distribution_protein,NR0B2->chr1:27237980-27240457:-,nuclear_receptor_subfamily_0_group_B_member_2	DMS454_LUNG	0	0.1	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	PPAP2A--CCNO	1	1	PPAP2A	6300	chr5:54763697:-	CCNO	13679	chr5:54528374:-	ONLY_REF_SPLICE	YES	60	6	0.03	0.25	0.0107	0.0107	PPAP2A->chr5:54720682-54830878:-,CCNO->chr5:54526980-54529508:-,cyclin_O	DMS454_LUNG	0.03	0.25	0.0214	TRUE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	PTPRK--ZNF726	1	1	PTPRK	1467	chr6:128841404:-	ZNF726	63092	chr19:24126296:+	ONLY_REF_SPLICE	YES	88	1	0.02	0.67	0.0107	0.0107	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,ZNF726->chr19:24097678-24127961:+,zinc_finger_protein_726	DMS454_LUNG	0.02	0.67	0.0214	TRUE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	RGS7--FBXL17	1	1	RGS7	2460	chr1:241518999:-	FBXL17	38512	chr5:107216880:-	ONLY_REF_SPLICE	YES	27	27	0.07	0.07	0.0107	0.0107	RGS7->chr1:240931554-241520530:-,regulator_of_G-protein_signaling_7,FBXL17->F-box_and_leucine-rich_repeat_protein_17,chr5:107194736-107717799:-	DMS454_LUNG	0.07	0.07	0.0214	TRUE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	RHOT2--PIGQ	1	1	RHOT2	5299	chr16:722384:+	PIGQ	17377	chr16:625839:+	ONLY_REF_SPLICE	NO	114	100	0.02	0.02	0.0107	0.0107	LOCAL_REARRANGEMENT:+:[83950],RHOT2->chr16:718086-724174:+,ras_homolog_family_member_T2,PIGQ->chr16:616995-634136:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_Q	DMS454_LUNG	0.02	0.02	0.0214	TRUE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	RNF128--CXorf57	1	1	RNF128	3349	chrX:105970627:+	CXorf57	18346	chrX:105875855:+	ONLY_REF_SPLICE	YES	573	237	0	0.01	0.0107	0.0107	LOCAL_REARRANGEMENT:+:[14352],RNF128->chrX:105937024-106040223:+,ring_finger_protein_128,_E3_ubiquitin_protein_ligase,CXorf57->chrX:105855160-105922672:+,chromosome_X_open_reading_frame_57	DMS454_LUNG	0	0.01	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	4	0.5	0.33	0.0107	0.0107	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	DMS454_LUNG	0.33	0.5	0.0214	FALSE	141	264	50	91	0	FALSE	ACH-000844
DMS454_LUNG	RP11-268G12.1--NR0B1	1	1	RP11-268G12.1	6272	chrX:27354527:-	NR0B1	17355	chrX:30322940:-	ONLY_REF_SPLICE	YES	18	432	0.1	0	0.0107	0.0107	RP11-268G12.1->chrX:27193037-27417114:-,NR0B1->chrX:30322323-30327715:-,nuclear_receptor_subfamily_0_group_B_member_1	DMS454_LUNG	0	0.1	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	12	1	0.14	0.0107	0.0107	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	DMS454_LUNG	0.14	1	0.0214	TRUE	477	1352	189	275	0	FALSE	ACH-000844
DMS454_LUNG	RPS9--PSMD3	1	1	RPS9	1868	chr19:54705477:+	PSMD3	13142	chr17:38140547:+	ONLY_REF_SPLICE	YES	2136	466	0	0	0.0107	0.0107	RPS9->chr19:54704610-54752862:+,ribosomal_protein_S9,PSMD3->chr17:38137050-38154213:+,proteasome_26S_subunit,_non-ATPase_3	DMS454_LUNG	0	0	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	STK33--SFPQ	1	1	STK33	1207	chr11:8615630:-	SFPQ	43743	chr1:35643637:-	ONLY_REF_SPLICE	YES	42	162	0.05	0.01	0.0107	0.0107	STK33->chr11:8413418-8615836:-,serine/threonine_kinase_33,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	DMS454_LUNG	0.01	0.05	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	STXBP5L--CD86	1	1	STXBP5L	5977	chr3:120764382:+	CD86	45070	chr3:121810448:+	ONLY_REF_SPLICE	YES	34	0	0.06	1	0.0107	0.0107	STXBP5L->chr3:120626919-121143608:+,syntaxin_binding_protein_5_like,CD86->CD86_molecule,chr3:121774213-121839983:+	DMS454_LUNG	0.06	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000844
DMS454_LUNG	VWDE--PHF14	1	1	VWDE	1283	chr7:12443285:-	PHF14	39881	chr7:11053374:+	ONLY_REF_SPLICE	YES	13	116	0.13	0.02	0.0107	0.0107	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	DMS454_LUNG	0.02	0.13	0.0214	TRUE	0	0	0	1	0	FALSE	ACH-000844
DMS454_LUNG	ZNF420--CTC-454I21.3	1	1	ZNF420	5639	chr19:37582023:+	CTC-454I21.3	16096	chr19:37698156:-	ONLY_REF_SPLICE	YES	32	1	0.06	0.67	0.0107	0.0107	PROTCLUST,NEIGHBORS_OVERLAP:+:-:[37295],ZNF420->chr19:37498759-37621216:+,zinc_finger_protein_420,CTC-454I21.3->chr19:37583921-37701414:-	DMS454_LUNG	0.06	0.67	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000844
SW1353_BONE	AC104389.28--HBE1	46	19	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	9	1	0.88	0.98	0.5383	0.2223	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	SW1353_BONE	0.88	0.98	0.7606	TRUE	0	48	0	65	48	FALSE	ACH-000418
SW1353_BONE	AP003900.6--AC008132.1	21	2	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	3	0	0.88	1	0.2457	0.0234	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1353_BONE	0.88	1	0.2691	TRUE	0	0	0	25	0	FALSE	ACH-000418
SW1353_BONE	TIMM23B--PARGP1	15	4	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1755	0.0468	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	SW1353_BONE	1	1	0.2223	TRUE	393	2105	140	19	0	FALSE	ACH-000418
SW1353_BONE	AP003900.6--AC008132.1	10	2	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.117	0.0234	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1353_BONE	0.86	1	0.1404	TRUE	1	1	0	28	1	FALSE	ACH-000418
SW1353_BONE	PLXDC1--TAF13	10	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.117	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SW1353_BONE	1	1	0.117	TRUE	7	10	0	216	0	FALSE	ACH-000418
SW1353_BONE	AC104389.28--HBE1	3	20	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	9	0	0.72	1	0.0351	0.234	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	SW1353_BONE	0.72	1	0.2691	TRUE	0	35	0	55	35	FALSE	ACH-000418
SW1353_BONE	RP11-680G10.1--GSE1	5	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	2	1	0.78	0.0585	0.0234	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW1353_BONE	0.78	1	0.0819	TRUE	465	1949	224	605	0	FALSE	ACH-000418
SW1353_BONE	C15orf57--CBX3	4	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	9	10	0.47	0.44	0.0468	0.0468	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SW1353_BONE	0.44	0.47	0.0936	TRUE	267	562	48	632	0	FALSE	ACH-000418
SW1353_BONE	CTD-2337A12.1--CAST	5	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0585	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SW1353_BONE	1	1	0.0585	TRUE	347	1186	183	220	0	FALSE	ACH-000418
SW1353_BONE	SEPT7--ZC4H2	5	0	SEPT7	5760	chr7:35872510:+	ZC4H2	31289	chrX:64141868:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0585	0	SEPT7->chr7:35840542-35944917:+,septin_7,ZC4H2->chrX:64136250-64254593:-,zinc_finger_C4H2-type_containing	SW1353_BONE	1	1	0.0585	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	RP11-634B7.4--TRIM58	4	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	7	1	0.42	0.0468	0.0117	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	SW1353_BONE	0.42	1	0.0585	TRUE	158	633	76	73	0	FALSE	ACH-000418
SW1353_BONE	C15orf57--CBX3	3	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	9	10	0.44	0.41	0.0351	0.0468	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SW1353_BONE	0.41	0.44	0.0819	TRUE	267	562	48	632	0	FALSE	ACH-000418
SW1353_BONE	RP11-254I22.1--CTD-2337A12.1	4	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0468	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	SW1353_BONE	1	1	0.0468	TRUE	4	2	0	28	0	FALSE	ACH-000418
SW1353_BONE	AC008440.5--UBE2H	3	0	AC008440.5	2359	chr19:54377944:-	UBE2H	18413	chr7:129472974:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	AC008440.5->chr19:54377880-54379303:-,UBE2H->chr7:129470572-129592789:-,ubiquitin_conjugating_enzyme_E2_H	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	ARIH1--ZBTB7A	3	0	ARIH1	3825	chr15:72810475:+	ZBTB7A	26328	chr19:4055245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	ARIH1->ariadne_RBR_E3_ubiquitin_protein_ligase_1,chr15:72766667-72879692:+,ZBTB7A->chr19:4044362-4066943:-,zinc_finger_and_BTB_domain_containing_7A	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	NDRG1--ATN1	3	0	NDRG1	27206	chr8:134250838:-	ATN1	36643	chr12:7045868:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	NDRG1->N-myc_downstream_regulated_1,Oncogene{Bushman},chr8:134249414-134314265:-,ATN1->atrophin_1,chr12:7033626-7051484:+	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	PLIN3--CHM	3	0	PLIN3	10083	chr19:4838732:-	CHM	34489	chrX:85118239:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	PLIN3->chr19:4838353-4867780:-,perilipin_3,CHM->CHM,_Rab_escort_protein_1,chrX:85116185-85302566:-	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	PTMS--CTDNEP1	3	0	PTMS	4137	chr12:6879120:+	CTDNEP1	11473	chr17:7149620:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	PTMS->chr12:6874682-6880116:+,parathymosin,CTDNEP1->CTD_nuclear_envelope_phosphatase_1,chr17:7146910-7155810:-	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	RUFY1--SMU1	3	0	RUFY1	14509	chr5:179018705:+	SMU1	33464	chr9:33062167:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	RUFY1->RUN_and_FYVE_domain_containing_1,chr5:178977559-179037027:+,SMU1->chr9:33041762-33076665:-,smu-1_suppressor_of_mec-8_and_unc-52_homolog_(C._elegans)	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	SLC2A11--MBOAT2	3	0	SLC2A11	13827	chr22:24224212:+	MBOAT2	29438	chr2:9017266:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	SLC2A11->chr22:24198890-24228496:+,solute_carrier_family_2_member_11,MBOAT2->chr2:8992820-9143942:-,membrane_bound_O-acyltransferase_domain_containing_2	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	SLC2A11--MBOAT2	3	0	SLC2A11	14005	chr22:24224390:+	MBOAT2	29438	chr2:9017266:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	SLC2A11->chr22:24198890-24228496:+,solute_carrier_family_2_member_11,MBOAT2->chr2:8992820-9143942:-,membrane_bound_O-acyltransferase_domain_containing_2	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	SNAP23--RPL32	3	0	SNAP23	13609	chr15:42822007:+	RPL32	22647	chr3:12880924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	SNAP23->chr15:42783431-42837547:+,synaptosome_associated_protein_23kDa,RPL32->chr3:12875984-12883087:-,ribosomal_protein_L32	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	SRRM2--VIM	3	0	SRRM2	13126	chr16:2816143:+	VIM	23551	chr10:17271286:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,SRRM2->chr16:2802330-2822539:+,serine/arginine_repetitive_matrix_2,VIM->chr10:17270258-17279592:+,vimentin	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	SSH1--MT-ND2	3	0	SSH1	20474	chr12:109182767:-	MT-ND2	30429	chrM:5123:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	SSH1->chr12:109176466-109251366:-,slingshot_protein_phosphatase_1,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SW1353_BONE	1	1	0.0351	FALSE	0	0	0	1	0	FALSE	ACH-000418
SW1353_BONE	STAT2--PRSS23	3	0	STAT2	5894	chr12:56744599:-	PRSS23	19740	chr11:86519334:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	STAT2->chr12:56735381-56753939:-,signal_transducer_and_activator_of_transcription_2,PRSS23->chr11:86502101-86663952:+,protease,_serine_23	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	TNFRSF12A--TICAM1	3	0	TNFRSF12A	3397	chr16:3071617:+	TICAM1	9520	chr19:4817264:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	TNFRSF12A->chr16:3068446-3072384:+,tumor_necrosis_factor_receptor_superfamily_member_12A,TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	TPCN2--IFITM10	3	0	TPCN2	6731	chr11:68831435:+	IFITM10	27687	chr11:1769349:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,IFITM10->chr11:1753640-1771821:-,interferon_induced_transmembrane_protein_10	SW1353_BONE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	AP1G1--SLC25A26	2	0	AP1G1	12580	chr16:71798549:-	SLC25A26	46129	chr3:66396788:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-,SLC25A26->chr3:66119285-66438540:+,solute_carrier_family_25_member_26	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	CADM1--SUN1	2	0	CADM1	1687	chr11:115374989:-	SUN1	36893	chr7:872142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	CADM1->cell_adhesion_molecule_1,chr11:115039938-115375675:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	CIZ1--SNW1	2	0	CIZ1	7669	chr9:130942694:-	SNW1	20731	chr14:78221463:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-,SNW1->SNW_domain_containing_1,chr14:78183942-78227550:-	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	HDLBP--SREBF2	2	0	HDLBP	2932	chr2:242254517:-	SREBF2	54485	chr22:42289121:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein,SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	RHOA--DAG1	2	0	RHOA	2179	chr3:49449253:-	DAG1	21789	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[55715],RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,DAG1->chr3:49506146-49573048:+,dystroglycan_1	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	8	0	TRUE	ACH-000418
SW1353_BONE	ROBO1--ACIN1	2	0	ROBO1	2202	chr3:79638974:-	ACIN1	59886	chr14:23538826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	ROBO1->Oncogene{Bushman},chr3:78646390-79816965:-,roundabout_guidance_receptor_1,ACIN1->apoptotic_chromatin_condensation_inducer_1,chr14:23527773-23564823:-	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	SEMA5A--KIAA0391	2	0	SEMA5A	23602	chr5:9062999:-	KIAA0391	52099	chr14:35777200:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	SEMA5A->chr5:9035138-9546187:-,semaphorin_5A,KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	SNX25--YME1L1	2	0	SNX25	17484	chr4:186267804:+	YME1L1	49784	chr10:27405274:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	SNX25->chr4:186125391-186291339:+,sorting_nexin_25,YME1L1->YME1_like_1_ATPase,chr10:27399383-27444195:-	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	TG--SLC22A25	2	0	TG	41216	chr8:134007049:+	SLC22A25	71759	chr11:62933730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	TG->chr8:133879203-134147147:+,thyroglobulin,SLC22A25->chr11:62931248-62997124:-,solute_carrier_family_22_member_25	SW1353_BONE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000418
SW1353_BONE	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SW1353_BONE	1	1	0.0234	FALSE	272	151	14	158	0	FALSE	ACH-000418
SW1353_BONE	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0117	0.0234	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW1353_BONE	1	1	0.0351	TRUE	458	1351	185	561	0	FALSE	ACH-000418
SW1353_BONE	AP003900.6--AC008132.1	1	1	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	3	3	0.4	0.4	0.0117	0.0117	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1353_BONE	0.4	0.4	0.0234	TRUE	0	0	0	13	0	TRUE	ACH-000418
SW1353_BONE	AP003900.6--AC008132.1	1	1	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.0117	0.0117	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1353_BONE	0.4	1	0.0234	TRUE	0	0	0	16	0	TRUE	ACH-000418
SW1353_BONE	AP003900.6--AC008132.1	1	1	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	NO	2	0	0.5	1	0.0117	0.0117	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1353_BONE	0.5	1	0.0234	TRUE	0	0	0	11	0	TRUE	ACH-000418
KYSE450_OESOPHAGUS	MT-ND4--MT-ND4L	628	19	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	20	0	0.97	1	6.932	0.2097	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE450_OESOPHAGUS	0.97	1	7.1417	FALSE	344	827	44	306	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	PXN--KRT86	109	57	PXN	1155	chr12:120703420:-	KRT86	26537	chr12:52695697:+	ONLY_REF_SPLICE	YES	31	6	0.84	0.97	1.2032	0.6292	PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,KRT86->chr12:52643084-52702947:+,keratin_86	KYSE450_OESOPHAGUS	0.84	0.97	1.8324	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	PIP5K1A--SCNM1	92	88	PIP5K1A	5709	chr1:151196755:+	SCNM1	24694	chr1:151138947:+	ONLY_REF_SPLICE	YES	354	395	0.34	0.31	1.0155	0.9714	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[27652],PIP5K1A->chr1:151170425-151222012:+,phosphatidylinositol-4-phosphate_5-kinase_type_1_alpha,SCNM1->chr1:151129140-151142773:+,sodium_channel_modifier_1	KYSE450_OESOPHAGUS	0.31	0.34	1.9869	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	TIMM23B--LINC00843	87	49	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9603	0.5409	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KYSE450_OESOPHAGUS	1	1	1.5012	TRUE	508	994	45	981	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	AP003900.6--AP000345.1	63	2	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	2	0	0.97	1	0.6954	0.0221	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	KYSE450_OESOPHAGUS	0.97	1	0.7175	TRUE	4	17	0	31	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	ABCC1--NFATC2IP	48	41	ABCC1	5790	chr16:16110478:+	NFATC2IP	45386	chr16:28963453:+	ONLY_REF_SPLICE	YES	246	110	0.27	0.45	0.5298	0.4526	{Klijn_CCL:Head-Neck=1},ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,NFATC2IP->chr16:28962128-28978418:+,nuclear_factor_of_activated_T-cells_2_interacting_protein	KYSE450_OESOPHAGUS	0.27	0.45	0.9824	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	POLRMT--PALM	47	34	POLRMT	12165	chr19:618488:-	PALM	20614	chr19:726138:+	ONLY_REF_SPLICE	YES	83	0	0.49	1	0.5188	0.3753	{Klijn_CCL:Head-Neck=1},LOCAL_INVERSION:-:+:[75356],POLRMT->chr19:617223-633597:-,polymerase_(RNA)_mitochondrial,PALM->chr19:708953-748329:+,paralemmin	KYSE450_OESOPHAGUS	0.49	1	0.8941	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	MT-TA--MT-TC	50	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5519	0.0993	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE450_OESOPHAGUS	1	1	0.6512	FALSE	462	80	0	856	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	NRP1--ITGB1	48	17	NRP1	8745	chr10:33542956:-	ITGB1	54016	chr10:33212668:-	ONLY_REF_SPLICE	YES	27	157	0.71	0.29	0.5298	0.1877	HGNC_GENEFAM,{Klijn_CCL:Head-Neck=1},NRP1->chr10:33466420-33625190:-,neuropilin_1,ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1	KYSE450_OESOPHAGUS	0.29	0.71	0.7175	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	TIMM23--RP11-464F9.1	49	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	395	8	0.12	0.87	0.5409	0.0662	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KYSE450_OESOPHAGUS	0.12	0.87	0.6071	TRUE	519	3926	326	965	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MYO6--ME1	38	35	MYO6	1232	chr6:76459140:+	ME1	45665	chr6:84117620:-	ONLY_REF_SPLICE	YES	30	73	0.71	0.5	0.4195	0.3863	MYO6->chr6:76458909-76629254:+,myosin_VI,ME1->chr6:83920108-84140797:-,malic_enzyme_1	KYSE450_OESOPHAGUS	0.5	0.71	0.8058	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	VPS53--SRR	36	30	VPS53	26250	chr17:489510:-	SRR	58631	chr17:2218851:+	ONLY_REF_SPLICE	YES	38	8	0.63	0.89	0.3974	0.3311	VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,SRR->chr17:2206677-2228554:+,serine_racemase	KYSE450_OESOPHAGUS	0.63	0.89	0.7285	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	PHF17--RP11-447E20.1	40	10	PHF17	1254	chr4:129731032:+	RP11-447E20.1	26002	chr4:74643447:-	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.4415	0.1104	PHF17->chr4:129730779-129796379:+,RP11-447E20.1->chr4:74643353-74643777:-	KYSE450_OESOPHAGUS	0.89	1	0.5519	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	VPS35--MYLK3	32	16	VPS35	7356	chr16:46712855:-	MYLK3	31510	chr16:46766580:-	ONLY_REF_SPLICE	YES	208	2	0.19	0.96	0.3532	0.1766	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[17461],VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-,MYLK3->chr16:46740891-46824319:-,myosin_light_chain_kinase_3	KYSE450_OESOPHAGUS	0.19	0.96	0.5298	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	PAX9--GAS5	33	9	PAX9	4160	chr14:37132728:+	GAS5	17667	chr1:173835705:-	ONLY_REF_SPLICE	YES	28	1364	0.6	0.03	0.3643	0.0993	PAX9->Oncogene{Bushman},chr14:37126773-37148920:+,paired_box_9,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	KYSE450_OESOPHAGUS	0.03	0.6	0.4636	TRUE	0	0	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	RP11-123O10.4--GRIP1	29	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3201	0.0662	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYSE450_OESOPHAGUS	1	1	0.3863	FALSE	416	2512	207	587	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	ACAP2--XXYLT1	25	4	ACAP2	7732	chr3:195101738:-	XXYLT1	60126	chr3:194790840:-	ONLY_REF_SPLICE	YES	80	72	0.27	0.29	0.276	0.0442	NEIGHBORS[3569],ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-,XXYLT1->Oncogene{Bushman},chr3:194789008-194991896:-,xyloside_xylosyltransferase_1	KYSE450_OESOPHAGUS	0.27	0.29	0.3202	FALSE	0	2	0	2	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MYO10--FAM134B	23	8	MYO10	8342	chr5:16794755:-	FAM134B	54495	chr5:16572211:-	ONLY_REF_SPLICE	YES	142	15	0.18	0.67	0.2539	0.0883	{Klijn_CCL:Head-Neck=1},NEIGHBORS[48228],MYO10->chr5:16665395-16936372:-,myosin_X,FAM134B->chr5:16473147-16617167:-,family_with_sequence_similarity_134_member_B	KYSE450_OESOPHAGUS	0.18	0.67	0.3422	FALSE	0	0	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	SMAD3--IQCH	20	20	SMAD3	6466	chr15:67418322:+	IQCH	44723	chr15:67677274:+	ONLY_REF_SPLICE	YES	20	2	0.67	0.95	0.2208	0.2208	NEIGHBORS[59605],SMAD3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_3,chr15:67356101-67487533:+,IQCH->IQ_motif_containing_H,chr15:67547138-67794598:+	KYSE450_OESOPHAGUS	0.67	0.95	0.4416	FALSE	0	0	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	RP11-680G10.1--GSE1	22	11	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	54	1	0.38	0.2428	0.1214	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE450_OESOPHAGUS	0.38	1	0.3642	TRUE	465	1949	224	605	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	ABCC1--NFATC2IP	13	46	ABCC1	6852	chr16:16127027:+	NFATC2IP	45386	chr16:28963453:+	ONLY_REF_SPLICE	YES	212	110	0.22	0.35	0.1435	0.5078	{Klijn_CCL:Head-Neck=1},ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,NFATC2IP->chr16:28962128-28978418:+,nuclear_factor_of_activated_T-cells_2_interacting_protein	KYSE450_OESOPHAGUS	0.22	0.35	0.6513	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	CDC37L1--JAK2	23	6	CDC37L1	2623	chr9:4685158:+	JAK2	20134	chr9:5044403:+	ONLY_REF_SPLICE	YES	46	7	0.39	0.81	0.2539	0.0662	CDC37L1->cell_division_cycle_37_like_1,chr9:4679559-4708398:+,JAK2->ArcherDX_panel,FoundationOne_panel,Janus_kinase_2,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:4985033-5128183:+	KYSE450_OESOPHAGUS	0.39	0.81	0.3201	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	PIP5K1A--SCNM1	2	88	PIP5K1A	5836	chr1:151196882:+	SCNM1	24694	chr1:151138947:+	ONLY_REF_SPLICE	YES	373	395	0.19	0.19	0.0221	0.9714	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[27652],PIP5K1A->chr1:151170425-151222012:+,phosphatidylinositol-4-phosphate_5-kinase_type_1_alpha,SCNM1->chr1:151129140-151142773:+,sodium_channel_modifier_1	KYSE450_OESOPHAGUS	0.19	0.19	0.9935	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	CDH13--XX-CR54.1	21	9	CDH13	15137	chr16:83065823:+	XX-CR54.1	37877	chr1:248860332:+	INCL_NON_REF_SPLICE	YES	58	0	0.34	1	0.2318	0.0993	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,XX-CR54.1->chr1:248855492-248862411:+	KYSE450_OESOPHAGUS	0.34	1	0.3311	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	RP11-184M15.2--ARHGEF38	22	2	RP11-184M15.2	1095	chr4:129522468:-	ARHGEF38	13391	chr4:106557560:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2428	0.0221	RP11-184M15.2->chr4:129504154-129522562:-,ARHGEF38->Rho_guanine_nucleotide_exchange_factor_38,chr4:106473777-106629250:+	KYSE450_OESOPHAGUS	1	1	0.2649	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	PLXDC1--TAF13	21	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2318	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	KYSE450_OESOPHAGUS	1	1	0.2318	TRUE	7	10	0	216	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	PXN--KRT86	6	59	PXN	1155	chr12:120703420:-	KRT86	26439	chr12:52695599:+	INCL_NON_REF_SPLICE	YES	31	0	0.68	1	0.0662	0.6513	PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,KRT86->chr12:52643084-52702947:+,keratin_86	KYSE450_OESOPHAGUS	0.68	1	0.7175	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	SMAD3--IQCH	18	6	SMAD3	2698	chr15:67358698:+	IQCH	44723	chr15:67677274:+	ONLY_REF_SPLICE	YES	14	2	0.63	0.92	0.1987	0.0662	NEIGHBORS[59605],SMAD3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_3,chr15:67356101-67487533:+,IQCH->IQ_motif_containing_H,chr15:67547138-67794598:+	KYSE450_OESOPHAGUS	0.63	0.92	0.2649	FALSE	0	0	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	HSP90AB1--MT-RNR2	19	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3189	0	0.01	1	0.2097	0.011	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KYSE450_OESOPHAGUS	0.01	1	0.2207	FALSE	13	9	0	364	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MT-ND4--MT-ND4L	3	58	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	9	0	0.87	1	0.0331	0.6402	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE450_OESOPHAGUS	0.87	1	0.6733	FALSE	344	826	44	306	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	AGAP1--AC079135.1	16	5	AGAP1	10941	chr2:236659132:+	AC079135.1	42683	chr2:237168150:+	ONLY_REF_SPLICE	YES	39	0	0.35	1	0.1766	0.0552	NEIGHBORS[35646],AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,AC079135.1->chr2:237076090-237203570:+	KYSE450_OESOPHAGUS	0.35	1	0.2318	FALSE	0	0	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	HSP90AB1--MT-RNR2	17	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3195	0	0.01	1	0.1877	0.011	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KYSE450_OESOPHAGUS	0.01	1	0.1987	FALSE	13	9	0	364	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	BMP7--RP11-611E13.2	15	3	BMP7	1925	chr20:55840761:-	RP11-611E13.2	23946	chr12:70298199:-	ONLY_REF_SPLICE	YES	84	0	0.18	1	0.1656	0.0331	BMP7->bone_morphogenetic_protein_7,chr20:55743804-55841685:-,RP11-611E13.2->chr12:70297813-70637140:-	KYSE450_OESOPHAGUS	0.18	1	0.1987	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	C15orf57--CBX3	11	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	46	23	0.37	0.54	0.1214	0.1766	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KYSE450_OESOPHAGUS	0.37	0.54	0.298	TRUE	267	562	48	632	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	AP003900.6--AP000345.1	13	5	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	2	0	0.9	1	0.1435	0.0552	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	KYSE450_OESOPHAGUS	0.9	1	0.1987	TRUE	0	8	0	37	1	FALSE	ACH-000865
KYSE450_OESOPHAGUS	EIF1--RPS28	14	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1545	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KYSE450_OESOPHAGUS	1	1	0.1545	TRUE	0	0	0	81	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MT-ND4--MT-ND4L	5	36	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0552	0.3974	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE450_OESOPHAGUS	0.98	1	0.4526	FALSE	344	821	44	306	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	12	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1325	0.0883	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE450_OESOPHAGUS	1	1	0.2208	FALSE	515	4851	409	746	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	C15orf57--CBX3	10	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	43	25	0.33	0.46	0.1104	0.1214	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KYSE450_OESOPHAGUS	0.33	0.46	0.2318	TRUE	267	562	48	632	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MT-ND6--MT-TE	12	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1325	0.011	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE450_OESOPHAGUS	1	1	0.1435	FALSE	499	1288	110	792	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MT-TA--MT-TC	11	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1214	0.0221	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE450_OESOPHAGUS	1	1	0.1435	FALSE	462	80	0	856	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	PIP5K1A--SCNM1	1	42	PIP5K1A	5709	chr1:151196755:+	SCNM1	25157	chr1:151139410:+	ONLY_REF_SPLICE	NO	354	493	0.11	0.08	0.011	0.4636	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[27652],PIP5K1A->chr1:151170425-151222012:+,phosphatidylinositol-4-phosphate_5-kinase_type_1_alpha,SCNM1->chr1:151129140-151142773:+,sodium_channel_modifier_1	KYSE450_OESOPHAGUS	0.08	0.11	0.4746	TRUE	0	0	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MT-TA--MT-TC	9	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0993	0.0993	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE450_OESOPHAGUS	1	1	0.1986	FALSE	462	80	0	856	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	RP11-680G10.1--GSE1	8	12	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	35	1	0.36	0.0883	0.1325	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE450_OESOPHAGUS	0.36	1	0.2208	TRUE	458	1351	185	561	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	POLRMT--PALM	6	17	POLRMT	11948	chr19:618705:-	PALM	20614	chr19:726138:+	ONLY_REF_SPLICE	YES	73	0	0.24	1	0.0662	0.1877	{Klijn_CCL:Head-Neck=1},LOCAL_INVERSION:-:+:[75356],POLRMT->chr19:617223-633597:-,polymerase_(RNA)_mitochondrial,PALM->chr19:708953-748329:+,paralemmin	KYSE450_OESOPHAGUS	0.24	1	0.2539	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	MT-ND4--MT-ND4L	5	19	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	7927	0	0	1	0.0552	0.2097	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE450_OESOPHAGUS	0	1	0.2649	FALSE	328	800	43	304	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MT-TA--MT-TC	8	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0883	0.0773	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE450_OESOPHAGUS	1	1	0.1656	FALSE	462	80	0	856	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0993	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KYSE450_OESOPHAGUS	1	1	0.0993	TRUE	0	0	0	434	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	PXN--KRT86	8	3	PXN	1155	chr12:120703420:-	KRT86	28735	chr12:52697895:+	ONLY_REF_SPLICE	YES	31	45	0.26	0.2	0.0883	0.0331	PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,KRT86->chr12:52643084-52702947:+,keratin_86	KYSE450_OESOPHAGUS	0.2	0.26	0.1214	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	AGAP1--AC079135.1	8	1	AGAP1	10941	chr2:236659132:+	AC079135.1	43776	chr2:237186015:+	ONLY_REF_SPLICE	YES	39	0	0.19	1	0.0883	0.011	NEIGHBORS[35646],AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,AC079135.1->chr2:237076090-237203570:+	KYSE450_OESOPHAGUS	0.19	1	0.0993	FALSE	0	0	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	8	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0883	0.011	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KYSE450_OESOPHAGUS	0.9	1	0.0993	FALSE	20	187	4	79	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	PAX9--GAS5	5	13	PAX9	5269	chr14:37135303:+	GAS5	17612	chr1:173835760:-	INCL_NON_REF_SPLICE	YES	29	1403	0.38	0.01	0.0552	0.1435	PAX9->Oncogene{Bushman},chr14:37126773-37148920:+,paired_box_9,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	KYSE450_OESOPHAGUS	0.01	0.38	0.1987	TRUE	0	0	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MAML1--RUFY1	7	0	MAML1	1578	chr5:179160428:+	RUFY1	22487	chr5:178987026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0773	0	MAML1->chr5:179159851-179223512:+,mastermind_like_transcriptional_coactivator_1,RUFY1->RUN_and_FYVE_domain_containing_1,chr5:178977559-179037027:+	KYSE450_OESOPHAGUS	1	1	0.0773	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	MT-ND4--MT-ND4L	4	12	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0.1325	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE450_OESOPHAGUS	1	1	0.1767	FALSE	344	821	44	306	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	RP11-444D3.1--SOX5	6	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	5	1	0.67	0.0662	0.0442	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KYSE450_OESOPHAGUS	0.67	1	0.1104	TRUE	477	1352	189	275	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	WTAPP1--RUVBL1	7	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0773	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	KYSE450_OESOPHAGUS	1	1	0.0773	TRUE	9	252	6	66	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	ABCC1--NFATC2IP	4	11	ABCC1	4664	chr16:16108485:+	NFATC2IP	45386	chr16:28963453:+	ONLY_REF_SPLICE	YES	248	110	0.06	0.12	0.0442	0.1214	{Klijn_CCL:Head-Neck=1},ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,NFATC2IP->chr16:28962128-28978418:+,nuclear_factor_of_activated_T-cells_2_interacting_protein	KYSE450_OESOPHAGUS	0.06	0.12	0.1656	TRUE	0	0	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MT-ND4--MT-ND4L	5	5	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	26	0	0.28	1	0.0552	0.0552	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE450_OESOPHAGUS	0.28	1	0.1104	FALSE	344	827	44	306	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MT-ND6--MT-TE	5	5	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0.0552	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE450_OESOPHAGUS	1	1	0.1104	FALSE	499	1288	110	792	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MT-ND4--MT-ATP8	6	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE450_OESOPHAGUS	1	1	0.0662	FALSE	230	193	14	283	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	NF1--RP11-848P1.9	4	8	NF1	7019	chr17:29497015:+	RP11-848P1.9	79958	chr17:29343913:+	ONLY_REF_SPLICE	YES	85	0	0.12	1	0.0442	0.0883	LOCAL_REARRANGEMENT:+:[1800],NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,RP11-848P1.9->chr17:29335515-29420145:+	KYSE450_OESOPHAGUS	0.12	1	0.1325	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	MYO6--ME1	1	19	MYO6	1232	chr6:76459140:+	ME1	46799	chr6:84108235:-	ONLY_REF_SPLICE	NO	30	88	0.4	0.19	0.011	0.2097	MYO6->chr6:76458909-76629254:+,myosin_VI,ME1->chr6:83920108-84140797:-,malic_enzyme_1	KYSE450_OESOPHAGUS	0.19	0.4	0.2207	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	PHF17--RP11-447E20.1	3	10	PHF17	1668	chr4:129731446:+	RP11-447E20.1	26002	chr4:74643447:-	INCL_NON_REF_SPLICE	YES	7	0	0.65	1	0.0331	0.1104	PHF17->chr4:129730779-129796379:+,RP11-447E20.1->chr4:74643353-74643777:-	KYSE450_OESOPHAGUS	0.65	1	0.1435	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	3	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0331	0.1104	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE450_OESOPHAGUS	0.93	1	0.1435	FALSE	192	492	57	212	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0552	0.011	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE450_OESOPHAGUS	0.67	1	0.0662	FALSE	292	1546	117	613	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	NRIP1--AF127936.7	4	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.69	1	0.0442	0.0552	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE450_OESOPHAGUS	0.69	1	0.0994	FALSE	164	806	69	479	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	RORA--ANXA2	5	1	RORA	13827	chr15:60884586:-	ANXA2	53106	chr15:60678285:-	ONLY_REF_SPLICE	YES	0	344	1	0.02	0.0552	0.011	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	KYSE450_OESOPHAGUS	0.02	1	0.0662	FALSE	4	3	0	6	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	TIAM2--SYNJ2	5	1	TIAM2	1713	chr6:155154543:+	SYNJ2	55385	chr6:158449788:+	ONLY_REF_SPLICE	YES	13	10	0.32	0.38	0.0552	0.011	TIAM2->T-cell_lymphoma_invasion_and_metastasis_2,chr6:155153831-155578857:+,SYNJ2->chr6:158402888-158520208:+,synaptojanin_2	KYSE450_OESOPHAGUS	0.32	0.38	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	SRR--NXN	5	0	SRR	10063	chr17:2226639:+	NXN	25064	chr17:729318:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0552	0	SRR->chr17:2206677-2228554:+,serine_racemase,NXN->chr17:702553-883010:-,nucleoredoxin	KYSE450_OESOPHAGUS	1	1	0.0552	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	MT-TA--MT-TC	3	7	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0.0773	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE450_OESOPHAGUS	1	1	0.1104	FALSE	462	80	0	856	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MT-ND4--MT-ATP8	4	2	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	9871	0	0	1	0.0442	0.0221	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE450_OESOPHAGUS	0	1	0.0663	FALSE	231	217	16	283	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MT-ND6--MT-TE	4	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0.0221	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE450_OESOPHAGUS	1	1	0.0663	FALSE	499	1288	110	792	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	DLGAP1--PPP4R1	3	5	DLGAP1	1330	chr18:4455006:-	PPP4R1	45542	chr18:9595100:-	ONLY_REF_SPLICE	YES	11	111	0.42	0.07	0.0331	0.0552	DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1,PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1	KYSE450_OESOPHAGUS	0.07	0.42	0.0883	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	MT-ND4--MT-ATP8	4	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	9839	1	0	0.83	0.0442	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE450_OESOPHAGUS	0	0.83	0.0552	FALSE	231	217	16	283	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MT-ND4--MT-ND4L	3	5	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	13	0	0.38	1	0.0331	0.0552	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE450_OESOPHAGUS	0.38	1	0.0883	FALSE	344	826	44	306	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	2	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0.0993	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE450_OESOPHAGUS	1	1	0.1214	FALSE	407	2205	196	549	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MAZ--KRT17	4	0	MAZ	5417	chr16:29821843:+	KRT17	10504	chr17:39780814:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0	MAZ->MYC_associated_zinc_finger_protein,chr16:29817427-29823649:+,KRT17->chr17:39775689-39781094:-,keratin_17	KYSE450_OESOPHAGUS	1	1	0.0442	TRUE	0	0	0	2	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	MT-ND4--MT-ATP8	4	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE450_OESOPHAGUS	1	1	0.0442	FALSE	231	204	14	283	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MT-ND4--MT-ATP8	4	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE450_OESOPHAGUS	1	1	0.0442	FALSE	231	205	14	283	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	2	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0221	0.0883	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE450_OESOPHAGUS	0.91	1	0.1104	FALSE	467	2173	244	435	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	IGF1R--RP11-706C16.7	3	3	IGF1R	1705	chr15:99192904:+	RP11-706C16.7	42327	chr8:143844654:+	INCL_NON_REF_SPLICE	YES	89	0	0.06	1	0.0331	0.0331	IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor,RP11-706C16.7->chr8:143844534-143847845:+	KYSE450_OESOPHAGUS	0.06	1	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	RP11-123O10.4--GRIP1	3	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0331	0.0331	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYSE450_OESOPHAGUS	1	1	0.0662	FALSE	93	270	15	244	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	AC002066.1--AC073130.1	3	2	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	13	0	0.28	1	0.0331	0.0221	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	KYSE450_OESOPHAGUS	0.28	1	0.0552	FALSE	0	1	1	30	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0.1104	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE450_OESOPHAGUS	1	1	0.1214	FALSE	275	511	55	178	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	RP11-120D5.1--MID1	3	1	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	0	123	1	0.03	0.0331	0.011	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KYSE450_OESOPHAGUS	0.03	1	0.0441	FALSE	0	9	0	55	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	VPS35--MYLK3	2	5	VPS35	6142	chr16:46714583:-	MYLK3	31510	chr16:46766580:-	ONLY_REF_SPLICE	YES	286	2	0.02	0.78	0.0221	0.0552	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[17461],VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-,MYLK3->chr16:46740891-46824319:-,myosin_light_chain_kinase_3	KYSE450_OESOPHAGUS	0.02	0.78	0.0773	TRUE	0	0	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	KRT5--MT-CO3	3	0	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	KYSE450_OESOPHAGUS	1	1	0.0331	FALSE	0	0	0	18	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	STK40--TXLNA	3	0	STK40	10526	chr1:36819965:-	TXLNA	23176	chr1:32650126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0331	0	STK40->chr1:36805225-36851497:-,serine/threonine_kinase_40,TXLNA->chr1:32645287-32663886:+,taxilin_alpha	KYSE450_OESOPHAGUS	1	1	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	CDC37L1--JAK2	2	3	CDC37L1	1341	chr9:4679899:+	JAK2	20134	chr9:5044403:+	ONLY_REF_SPLICE	YES	82	7	0.06	0.42	0.0221	0.0331	CDC37L1->cell_division_cycle_37_like_1,chr9:4679559-4708398:+,JAK2->ArcherDX_panel,FoundationOne_panel,Janus_kinase_2,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:4985033-5128183:+	KYSE450_OESOPHAGUS	0.06	0.42	0.0552	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	NRIP1--AF127936.7	2	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.5	1	0.0221	0.0331	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE450_OESOPHAGUS	0.5	1	0.0552	FALSE	125	705	46	456	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	SMAD3--IQCH	1	7	SMAD3	5197	chr15:67391362:+	IQCH	44723	chr15:67677274:+	ONLY_REF_SPLICE	NO	15	2	0.35	0.8	0.011	0.0773	NEIGHBORS[59605],SMAD3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_3,chr15:67356101-67487533:+,IQCH->IQ_motif_containing_H,chr15:67547138-67794598:+	KYSE450_OESOPHAGUS	0.35	0.8	0.0883	FALSE	0	0	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	AARS--RP11-529K1.2	2	2	AARS	3957	chr16:70310389:-	RP11-529K1.2	26363	chr16:70351276:-	ONLY_REF_SPLICE	YES	1033	3	0	0.57	0.0221	0.0221	LOCAL_REARRANGEMENT:-:[26097],AARS->alanyl-tRNA_synthetase,chr16:70286198-70323446:-,RP11-529K1.2->chr16:70349543-70380650:-	KYSE450_OESOPHAGUS	0	0.57	0.0442	FALSE	0	0	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	AC002066.1--AC073130.1	2	2	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	10	0	0.29	1	0.0221	0.0221	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	KYSE450_OESOPHAGUS	0.29	1	0.0442	FALSE	0	3	0	33	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	DLGAP1--PPP4R1	1	6	DLGAP1	1330	chr18:4455006:-	PPP4R1	41568	chr18:9614268:-	ONLY_REF_SPLICE	NO	11	31	0.39	0.18	0.011	0.0662	DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1,PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1	KYSE450_OESOPHAGUS	0.18	0.39	0.0772	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	RP11-114H23.1--RP11-114H23.2	2	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0.0221	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	KYSE450_OESOPHAGUS	1	1	0.0442	FALSE	81	155	12	160	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	2	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0221	0.011	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KYSE450_OESOPHAGUS	0.75	1	0.0331	FALSE	33	240	4	98	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MYO6--ME1	1	5	MYO6	1232	chr6:76459140:+	ME1	47949	chr6:84061858:-	ONLY_REF_SPLICE	YES	30	124	0.17	0.05	0.011	0.0552	MYO6->chr6:76458909-76629254:+,myosin_VI,ME1->chr6:83920108-84140797:-,malic_enzyme_1	KYSE450_OESOPHAGUS	0.05	0.17	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	RP11-120D5.1--MID1	2	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	123	0.5	0.02	0.0221	0.011	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KYSE450_OESOPHAGUS	0.02	0.5	0.0331	FALSE	0	48	1	163	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	RMND5B--CCZ1B	2	0	RMND5B	1381	chr5:177558377:+	CCZ1B	29396	chr7:6845668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	RMND5B->Oncogene{Bushman},chr5:177557997-177577566:+,required_for_meiotic_nuclear_division_5_homolog_B,CCZ1B->CCZ1_homolog_B,_vacuolar_protein_trafficking_and_biogenesis_associated,chr7:6833765-6866401:-	KYSE450_OESOPHAGUS	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	RP11-1L12.3--SLC5A12	2	0	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	KYSE450_OESOPHAGUS	1	1	0.0221	TRUE	3	101	0	60	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	RP11-444D3.1--SOX5	1	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	6	1	0.45	0.011	0.0442	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KYSE450_OESOPHAGUS	0.45	1	0.0552	TRUE	160	277	29	98	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	RP11-444D3.1--SOX5	1	4	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	5	1	0.5	0.011	0.0442	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KYSE450_OESOPHAGUS	0.5	1	0.0552	TRUE	274	363	69	150	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	RP11-680G10.1--GSE1	1	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	109	1	0.04	0.011	0.0442	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE450_OESOPHAGUS	0.04	1	0.0552	TRUE	64	13	3	59	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	SBF2--RP11-220I1.1	2	0	SBF2	19870	chr11:9983504:-	RP11-220I1.1	67291	chr9:37086665:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	SBF2->SET_binding_factor_2,chr11:9800214-10315754:-,RP11-220I1.1->chr9:37079893-37090398:+	KYSE450_OESOPHAGUS	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	TBC1D23--CMSS1	2	0	TBC1D23	15575	chr3:100025387:+	CMSS1	37565	chr3:99865817:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	LOCAL_REARRANGEMENT:+:[82397],TBC1D23->TBC1_domain_family_member_23,chr3:99979844-100044095:+,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	KYSE450_OESOPHAGUS	1	1	0.0221	TRUE	0	1	0	1	1	TRUE	ACH-000865
KYSE450_OESOPHAGUS	TIAM2--SYNJ2	1	4	TIAM2	2974	chr6:155182132:+	SYNJ2	55385	chr6:158449788:+	ONLY_REF_SPLICE	YES	10	10	0.33	0.33	0.011	0.0442	TIAM2->T-cell_lymphoma_invasion_and_metastasis_2,chr6:155153831-155578857:+,SYNJ2->chr6:158402888-158520208:+,synaptojanin_2	KYSE450_OESOPHAGUS	0.33	0.33	0.0552	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KYSE450_OESOPHAGUS	1	1	0.0221	TRUE	62	24	1	171	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	TMEM144--RP11-526A4.1	2	0	TMEM144	18662	chr4:159165501:+	RP11-526A4.1	26211	chr4:150736500:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	TMEM144->chr4:159122756-159176563:+,transmembrane_protein_144,RP11-526A4.1->chr4:150273169-150817385:-	KYSE450_OESOPHAGUS	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	WARS--MDH2	2	0	WARS	1546	chr14:100842597:-	MDH2	25871	chr7:75684148:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	WARS->chr14:100800125-100843142:-,tryptophanyl-tRNA_synthetase,MDH2->chr7:75677369-75696826:+,malate_dehydrogenase_2	KYSE450_OESOPHAGUS	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000865
KYSE450_OESOPHAGUS	AP003900.6--AP000345.1	1	3	AP003900.6	2187	chr21:11172043:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	8	0	0.33	1	0.011	0.0331	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	KYSE450_OESOPHAGUS	0.33	1	0.0441	TRUE	1	2	0	16	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	CCAT1--PVT1	1	2	CCAT1	1279	chr8:128231055:-	PVT1	28652	chr8:129108764:+	ONLY_REF_SPLICE	YES	359	255	0.01	0.01	0.011	0.0221	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	KYSE450_OESOPHAGUS	0.01	0.01	0.0331	FALSE	0	1	0	2	1	FALSE	ACH-000865
KYSE450_OESOPHAGUS	CCAT1--PVT1	1	2	CCAT1	1279	chr8:128231055:-	PVT1	26354	chr8:129082406:+	ONLY_REF_SPLICE	YES	359	304	0.01	0.01	0.011	0.0221	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	KYSE450_OESOPHAGUS	0.01	0.01	0.0331	FALSE	0	1	0	2	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	GAPDH--WARS	1	2	GAPDH	5046	chr12:6647162:+	WARS	25358	chr14:100803539:-	ONLY_REF_SPLICE	YES	7539	2531	0	0	0.011	0.0221	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,WARS->chr14:100800125-100843142:-,tryptophanyl-tRNA_synthetase	KYSE450_OESOPHAGUS	0	0	0.0331	FALSE	0	0	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	MYO10--FAM134B	1	2	MYO10	8342	chr5:16794755:-	FAM134B	58492	chr5:16483581:-	ONLY_REF_SPLICE	YES	142	17	0.02	0.15	0.011	0.0221	{Klijn_CCL:Head-Neck=1},NEIGHBORS[48228],MYO10->chr5:16665395-16936372:-,myosin_X,FAM134B->chr5:16473147-16617167:-,family_with_sequence_similarity_134_member_B	KYSE450_OESOPHAGUS	0.02	0.15	0.0331	FALSE	0	0	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	ANKRD11--TIAM2	1	1	ANKRD11	11806	chr16:89383341:-	TIAM2	52537	chr6:155411423:+	ONLY_REF_SPLICE	YES	230	6	0.01	0.25	0.011	0.011	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,TIAM2->T-cell_lymphoma_invasion_and_metastasis_2,chr6:155153831-155578857:+	KYSE450_OESOPHAGUS	0.01	0.25	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	CPSF6--MIR205HG	1	1	CPSF6	11046	chr12:69656342:+	MIR205HG	20255	chr1:209602526:+	ONLY_REF_SPLICE	YES	149	2189	0.01	0	0.011	0.011	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+	KYSE450_OESOPHAGUS	0	0.01	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	25795	chr12:23818498:-	ONLY_REF_SPLICE	YES	0	8	1	0.2	0.011	0.011	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KYSE450_OESOPHAGUS	0.2	1	0.022	TRUE	0	2	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	UBALD1--NOC4L	1	1	UBALD1	1350	chr16:4664679:-	NOC4L	14307	chr12:132635526:+	ONLY_REF_SPLICE	YES	190	98	0.01	0.02	0.011	0.011	UBALD1->UBA_like_domain_containing_1,chr16:4658884-4665028:-,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	KYSE450_OESOPHAGUS	0.01	0.02	0.022	FALSE	0	1	0	1	0	FALSE	ACH-000865
KYSE450_OESOPHAGUS	ZNF738--CHMP1A	1	1	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	29	400	0.06	0	0.011	0.011	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	KYSE450_OESOPHAGUS	0	0.06	0.022	FALSE	1	20	1	28	3	FALSE	ACH-000865
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFB--MYH11	207	93	CBFB	5896	chr16:67116211:+	MYH11	50201	chr16:15814908:-	ONLY_REF_SPLICE	YES	55	3	0.85	0.99	3.0611	1.3753	Mitelman{Heart=2,Skin=2,MDS_NOS=2,RARS=2,AML=22},chimerdb_pubmed{acute myelogenous leukemia(AML),acute myeloid leukaemia (AML),core binding factor [CBF] leukemias,chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),Myelomonoblastic leukaemia,Granulocytic sarcoma,severalleukaemia,minimal residual disease (MRD), acute myeloid leukemia (AML), complete remission (CR),leukemia,Acute myelomonoblastic leukemia,acute myeloid leukemia,Acute myeloid leukemia (AML),acute myelomonocytic leukemia(M4),Granulocytic sarcoma (GS),Acute myeloid leukaemia (AML),myelodysplastic syndromes (MDS),chronic myeloid leukemia, acute lymphoblastic leukemia,childhood acute myeloid leukemia (AML), acute myelogenous leukemia,acute myeloid leukemia (AML),acute myelomonocytic leukemia (M4)},CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYH11->Oncogene{Bushman},chr16:15797029-15950890:-,myosin,_heavy_chain_11,_smooth_muscle	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.99	4.4364	TRUE	0	9	0	1	9	TRUE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	64	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9464	0.2218	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1682	TRUE	508	994	45	981	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	53	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7838	0.0148	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7986	FALSE	462	80	0	856	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HLA-C--MT-ND1	52	0	HLA-C	1507	chr6:31239401:-	MT-ND1	7513	chrM:3437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.769	0	HLA-C->chr6:31236526-31239907:-,major_histocompatibility_complex,_class_I,_C,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.769	FALSE	0	0	0	3	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	42	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	142	0	0.23	1	0.6211	0.0148	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.6359	TRUE	519	3926	326	965	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFB--MYH11	14	93	CBFB	5927	chr16:67116242:+	MYH11	50201	chr16:15814908:-	ONLY_REF_SPLICE	YES	65	3	0.62	0.97	0.207	1.3753	Mitelman{Heart=2,Skin=2,MDS_NOS=2,RARS=2,AML=22},chimerdb_pubmed{acute myelogenous leukemia(AML),acute myeloid leukaemia (AML),core binding factor [CBF] leukemias,chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),Myelomonoblastic leukaemia,Granulocytic sarcoma,severalleukaemia,minimal residual disease (MRD), acute myeloid leukemia (AML), complete remission (CR),leukemia,Acute myelomonoblastic leukemia,acute myeloid leukemia,Acute myeloid leukemia (AML),acute myelomonocytic leukemia(M4),Granulocytic sarcoma (GS),Acute myeloid leukaemia (AML),myelodysplastic syndromes (MDS),chronic myeloid leukemia, acute lymphoblastic leukemia,childhood acute myeloid leukemia (AML), acute myelogenous leukemia,acute myeloid leukemia (AML),acute myelomonocytic leukemia (M4)},CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYH11->Oncogene{Bushman},chr16:15797029-15950890:-,myosin,_heavy_chain_11,_smooth_muscle	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.97	1.5823	TRUE	0	9	0	1	9	TRUE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	27	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3993	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3993	FALSE	499	1288	110	792	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	27	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3993	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3993	TRUE	0	0	0	518	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFB--MYH11	1	93	CBFB	7159	chr16:67127532:+	MYH11	50201	chr16:15814908:-	ONLY_REF_SPLICE	YES	70	3	0.57	0.97	0.0148	1.3753	Mitelman{Heart=2,Skin=2,MDS_NOS=2,RARS=2,AML=22},chimerdb_pubmed{acute myelogenous leukemia(AML),acute myeloid leukaemia (AML),core binding factor [CBF] leukemias,chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),Myelomonoblastic leukaemia,Granulocytic sarcoma,severalleukaemia,minimal residual disease (MRD), acute myeloid leukemia (AML), complete remission (CR),leukemia,Acute myelomonoblastic leukemia,acute myeloid leukemia,Acute myeloid leukemia (AML),acute myelomonocytic leukemia(M4),Granulocytic sarcoma (GS),Acute myeloid leukaemia (AML),myelodysplastic syndromes (MDS),chronic myeloid leukemia, acute lymphoblastic leukemia,childhood acute myeloid leukemia (AML), acute myelogenous leukemia,acute myeloid leukemia (AML),acute myelomonocytic leukemia (M4)},CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYH11->Oncogene{Bushman},chr16:15797029-15950890:-,myosin,_heavy_chain_11,_smooth_muscle	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	0.97	1.3901	TRUE	0	0	0	1	0	TRUE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	14	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.207	0.0148	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2218	FALSE	462	80	0	856	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.1922	0.0592	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.2514	FALSE	499	1288	110	792	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-634B7.4--TRIM58	10	6	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	30	1	0.35	0.1479	0.0887	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	1	0.2366	TRUE	158	633	76	73	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	11	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	4901	0	0	1	0.1627	0.0148	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1775	TRUE	0	0	0	100	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1479	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1479	FALSE	499	1288	110	792	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCARB1--UBC	7	3	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	291	8	0.03	0.56	0.1035	0.0444	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.56	0.1479	TRUE	55	66	6	101	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	7	1	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1035	0.0148	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1183	TRUE	0	1	0	84	1	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0887	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0887	FALSE	462	80	0	856	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPO--MT-ATP8	5	2	MPO	4079	chr17:56355218:-	MT-ATP8	13263	chrM:8486:+	INCL_NON_REF_SPLICE	YES	12348	659	0	0.01	0.0739	0.0296	MPO->chr17:56347217-56358296:-,myeloperoxidase,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1035	FALSE	0	0	0	1	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	4	6	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	20	0	0.33	1	0.0592	0.0887	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.1479	FALSE	114	26	4	85	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	5	2	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	YES	22	39	0.24	0.15	0.0739	0.0296	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.24	0.1035	TRUE	4	3	0	21	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0739	0.0148	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0887	FALSE	499	1288	110	792	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	48	19	0.14	0.3	0.0444	0.0739	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.3	0.1183	TRUE	267	562	48	632	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	4	1	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0.0148	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.074	TRUE	0	1	0	84	1	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPO--MT-ATP8	3	5	MPO	6434	chr17:56350925:-	MT-ATP8	13244	chrM:8467:+	INCL_NON_REF_SPLICE	YES	9451	5	0	0.62	0.0444	0.0739	MPO->chr17:56347217-56358296:-,myeloperoxidase,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.62	0.1183	FALSE	0	2	0	1	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	4	MT-ND6	1254	chrM:14420:-	MT-TE	4573	chrM:14695:-	INCL_NON_REF_SPLICE	YES	5	0	0.58	1	0.0444	0.0592	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	1	0.1036	FALSE	499	1288	110	792	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0592	TRUE	22	156	2	142	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	1	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0444	0.0148	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0592	FALSE	499	1288	110	792	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.8	0.67	0.0444	0.0148	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.8	0.0592	FALSE	515	4851	409	746	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	3	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	360	0	0.01	1	0.0444	0.0148	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0592	FALSE	0	0	0	189	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0444	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0444	FALSE	499	1288	110	792	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PABPC1--RPS28	3	0	PABPC1	2022	chr8:101734016:-	RPS28	18700	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0444	0	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0444	TRUE	0	0	0	6	0	TRUE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0296	0.0148	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0444	FALSE	275	511	55	178	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C7orf50--UBE2E1	2	0	C7orf50	1072	chr7:1177825:-	UBE2E1	21912	chr3:23852951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD6--GNAS	2	0	CHD6	1155	chr20:40246979:-	GNAS	67953	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0296	TRUE	0	1	0	2	0	TRUE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LZTS2--AZU1	2	0	LZTS2	3251	chr10:102758738:+	AZU1	16321	chr19:828230:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	LZTS2->chr10:102756375-102767593:+,leucine_zipper,_putative_tumor_suppressor_2,AZU1->azurocidin_1,chr19:825097-832017:+	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRRC2B--SET	2	0	PRRC2B	1171	chr9:134269650:+	SET	46129	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	2	0	SPON2	1387	chr4:1202364:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0296	TRUE	0	7	0	1	1	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB2--MXI1	2	0	ZEB2	5479	chr2:145274845:-	MXI1	42404	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNA12--PSMA1	1	1	GNA12	4638	chr7:2834562:-	PSMA1	24117	chr11:14535245:-	ONLY_REF_SPLICE	NO	269	690	0.01	0	0.0148	0.0148	GNA12->G_protein_subunit_alpha_12,Oncogene{Bushman},chr7:2767746-2883958:-,PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0296	FALSE	0	0	0	2	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNAB2--KIAA2013	1	1	KCNAB2	7114	chr1:6086505:+	KIAA2013	37995	chr1:11983546:-	ONLY_REF_SPLICE	YES	145	138	0.01	0.01	0.0148	0.0148	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,KIAA2013->KIAA2013,chr1:11979648-11986485:-	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0296	FALSE	0	0	0	1	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFV3--U2AF1	1	1	NDUFV3	5809	chr21:44317157:+	U2AF1	26761	chr21:44515853:-	ONLY_REF_SPLICE	NO	128	690	0.02	0	0.0148	0.0148	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Substantia_nigra=1},NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0296	FALSE	0	5	0	8	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--CIC	1	1	PPP1R12C	8950	chr19:55610152:-	CIC	27605	chr19:42790923:+	ONLY_REF_SPLICE	YES	81	59	0.02	0.03	0.0148	0.0148	GTEx_FI:{Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},GTEx_v2:{count=5;pct=0.06%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Nerve_-_Tibial=1,Spleen=1,Colon_-_Sigmoid=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CIC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},capicua_transcriptional_repressor,chr19:42772689-42799949:+	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0296	TRUE	2	1	0	2	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	1	1	SPON2	4412	chr4:1195057:-	CTBP1	30074	chr4:1222131:-	ONLY_REF_SPLICE	YES	22	324	0.08	0.01	0.0148	0.0148	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.08	0.0296	FALSE	1	0	0	4	0	FALSE	ACH-000439
ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	1	1	SPON2	4412	chr4:1195057:-	CTBP1	23049	chr4:1232125:-	ONLY_REF_SPLICE	YES	22	254	0.08	0.01	0.0148	0.0148	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.08	0.0296	FALSE	2	0	0	8	0	FALSE	ACH-000439
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--PIEZO1	135	79	CBFA2T3	1548	chr16:89043065:-	PIEZO1	34636	chr16:88794069:-	ONLY_REF_SPLICE	YES	41	158	0.84	0.58	1.549	0.9064	NEIGHBORS[89647],CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	0.84	2.4554	FALSE	0	0	0	1	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	85	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9753	0.241	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2163	TRUE	508	994	45	981	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	58	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6655	0.0918	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7573	FALSE	462	80	0	856	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	53	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	138	5	0.28	0.92	0.6081	0.0229	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.92	0.631	TRUE	519	3926	326	965	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	47	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5393	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5393	TRUE	0	0	0	518	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--PIEZO1	8	81	CBFA2T3	4558	chr16:89007428:-	PIEZO1	34636	chr16:88794069:-	ONLY_REF_SPLICE	YES	43	158	0.67	0.36	0.0918	0.9294	NEIGHBORS[89647],CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.67	1.0212	FALSE	0	0	0	1	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	20	8	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	319	1	0.08	0.97	0.2295	0.0918	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.97	0.3213	TRUE	61	154	6	19	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--PIEZO1	1	79	CBFA2T3	3807	chr16:89008179:-	PIEZO1	34636	chr16:88794069:-	ONLY_REF_SPLICE	YES	43	158	0.65	0.34	0.0115	0.9064	NEIGHBORS[89647],CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.65	0.9179	FALSE	0	0	0	1	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	13	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1492	0.0918	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.241	FALSE	462	80	0	856	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	13	4	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1492	0.0459	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.1951	TRUE	0	1	0	84	1	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--PIEZO1	2	47	CBFA2T3	1548	chr16:89043065:-	PIEZO1	35105	chr16:88793600:-	ONLY_REF_SPLICE	YES	41	154	0.54	0.24	0.0229	0.5393	NEIGHBORS[89647],CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.54	0.5622	FALSE	0	0	0	1	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	10	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.1147	0.0459	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1606	FALSE	515	4851	409	746	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	10	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1147	0.0344	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1491	FALSE	416	2512	207	587	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	9	4	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1033	0.0459	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1492	TRUE	0	1	0	84	1	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	10	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1147	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1147	FALSE	462	80	0	856	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	9	3	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	319	2	0.04	0.86	0.1033	0.0344	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.86	0.1377	TRUE	30	67	4	15	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	8	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	7942	0	0	1	0.0918	0.0115	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1033	TRUE	0	0	0	100	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP13A1--ZNF14	6	8	ATP13A1	16593	chr19:19756456:-	ZNF14	21185	chr19:19825296:-	ONLY_REF_SPLICE	YES	143	9	0.09	0.61	0.0688	0.0918	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:-:[46778],ATP13A1->ATPase_13A1,chr19:19756007-19774502:-,ZNF14->chr19:19821280-19843906:-,zinc_finger_protein_14	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.61	0.1606	TRUE	0	0	0	1	0	TRUE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	7	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.62	1	0.0803	0.0115	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.0918	FALSE	292	1546	117	613	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	7	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0803	TRUE	46	1352	75	139	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-32B5.7--NBEAP1	6	1	RP11-32B5.7	3692	chr15:21941616:-	NBEAP1	9471	chr15:20876597:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0688	0.0115	RP11-32B5.7->chr15:21941147-21968151:-,NBEAP1->Oncogene{Bushman},chr15:20862967-20893737:-,neurobeachin_pseudogene_1	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0803	TRUE	1	1	0	1	1	TRUE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	5	4	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0574	0.0459	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.1033	TRUE	0	1	0	84	1	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLASRP--CLPTM1	5	0	CLASRP	2272	chr19:45543569:+	CLPTM1	25674	chr19:45480600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0574	0	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[45699],CLASRP->CLK4_associating_serine/arginine_rich_protein,chr19:45542298-45574214:+,CLPTM1->chr19:45457842-45496599:+,cleft_lip_and_palate_associated_transmembrane_protein_1	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-634B7.4--TRIM58	4	4	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	15	0.89	0.35	0.0459	0.0459	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.89	0.0918	TRUE	158	633	76	73	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	29	26	0.19	0.21	0.0459	0.0344	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.21	0.0803	TRUE	267	562	48	632	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--KBTBD11	4	1	CPSF6	11046	chr12:69656342:+	KBTBD11	27212	chr8:1954711:+	INCL_NON_REF_SPLICE	YES	251	455	0.02	0.01	0.0459	0.0115	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,KBTBD11->chr8:1922044-1955102:+,kelch_repeat_and_BTB_domain_containing_11	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0574	FALSE	0	1	0	4	1	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	32	25	0.18	0.22	0.0344	0.0459	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.22	0.0803	TRUE	267	562	48	632	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0459	TRUE	0	0	0	81	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	3	3	EEF2	8863	chr19:3977449:-	RPS28	13639	chr19:8386422:+	INCL_NON_REF_SPLICE	YES	7204	0	0	1	0.0344	0.0344	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0688	FALSE	0	0	0	100	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	1	9	RP11-353N4.6	7562	chr1:149591237:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	351	1	0.03	0.91	0.0115	0.1033	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.91	0.1148	TRUE	2	9	0	4	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0.0574	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0803	FALSE	275	511	55	178	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL5	3	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0344	TRUE	0	0	0	39	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	1	8	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	352	1	0.02	0.9	0.0115	0.0918	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.9	0.1033	TRUE	61	154	6	19	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0229	0.0459	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0688	FALSE	467	2173	244	435	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR2--DHX34	2	2	GLTSCR2	1262	chr19:48249040:+	DHX34	29491	chr19:47885237:+	ONLY_REF_SPLICE	YES	2001	9	0	0.31	0.0229	0.0229	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:2=pct:3.8],Breast=[count:2=pct:1.8],Cervix_Uteri=[count:1=pct:12.5],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=4;pct=0.05%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hippocampus=1,Whole_Blood=1,Spleen=1},GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.31	0.0458	FALSE	14	43	2	13	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	25	0	0.11	1	0.0229	0.0115	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0344	FALSE	125	705	46	456	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0.0574	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0689	FALSE	192	492	57	212	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--NSMCE2	2	0	C17orf76-AS1	1593	chr17:16342728:+	NSMCE2	24230	chr8:126369461:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	C17orf76-AS1->chr17:16342136-16381992:+,NSMCE2->NSE2/MMS21_homolog,_SMC5-SMC6_complex_SUMO_ligase,chr8:126103921-126379362:+	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HECTD4--AARS	2	0	HECTD4	49664	chr12:112647819:-	AARS	97024	chr16:70289739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,AARS->alanyl-tRNA_synthetase,chr16:70286198-70323446:-	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--DOT1L	2	0	OAZ1	1259	chr19:2269743:+	DOT1L	34537	chr19:2225387:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[36908],OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--PPP6R2	2	0	OAZ1	1259	chr19:2269743:+	PPP6R2	23324	chr22:50873395:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx_FI:{Blood=[count:2=pct:1.1],Lung=[count:1=pct:0.6],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=6;pct=0.07%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Artery_-_Tibial=1,Lung=1,Whole_Blood=1,Colon_-_Sigmoid=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	TRUE	6	1	0	7	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PANK4--SKI	2	0	PANK4	1137	chr1:2457903:-	SKI	22492	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PANK4->chr1:2439972-2458039:-,pantothenate_kinase_4,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	TRUE	1	1	0	4	0	TRUE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNPS1--EEF2K	2	0	RNPS1	1358	chr16:2318056:-	EEF2K	32278	chr16:22291519:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	RNPS1->RNA_binding_protein_with_serine_rich_domain_1,chr16:2303117-2318413:-,EEF2K->chr16:22217603-22298554:+,eukaryotic_elongation_factor_2_kinase	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	TRUE	0	1	0	17	0	TRUE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ST3GAL1--NDRG1	2	0	ST3GAL1	1248	chr8:134583936:-	NDRG1	32150	chr8:134296572:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx_FI:{Adipose_Tissue=[count:2=pct:0.7],Blood=[count:2=pct:1.1],Esophagus=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,NDRG1->N-myc_downstream_regulated_1,Oncogene{Bushman},chr8:134249414-134314265:-	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	TRUE	6	8	0	2	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	TRUE	62	24	1	171	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	36	0	0.08	1	0.0115	0.0229	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0344	FALSE	164	806	69	479	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0115	0.0229	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0344	FALSE	16	356	14	466	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMC1--TOP2B	1	1	CMC1	3625	chr3:28304871:+	TOP2B	24012	chr3:25686946:-	ONLY_REF_SPLICE	YES	127	98	0.02	0.02	0.0115	0.0115	GTEx&tcga_normals:1/3694=0.03%,CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+,TOP2B->Oncogene{Bushman},chr3:25639475-25706398:-,topoisomerase_(DNA)_II_beta	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0.0115	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	FALSE	93	270	15	244	0	FALSE	ACH-000065
OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWOX--RP11-319G9.5	1	1	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	18	0	0.1	1	0.0115	0.0115	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	OCIAML5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.023	FALSE	33	33	2	19	0	FALSE	ACH-000065
TTC709_SOFT_TISSUE	TIMM23B--LINC00843	94	36	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1102	0.4252	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TTC709_SOFT_TISSUE	0.99	1	1.5354	TRUE	508	994	45	981	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	IP6K1--UBA7	58	102	IP6K1	1189	chr3:49823787:-	UBA7	14675	chr3:49851375:-	INCL_NON_REF_SPLICE	YES	100	0	0.62	1	0.685	1.2046	LOCAL_REARRANGEMENT:-:[18665],IP6K1->chr3:49761727-49823975:-,inositol_hexakisphosphate_kinase_1,UBA7->Oncogene{Bushman},chr3:49842640-49851379:-,ubiquitin_like_modifier_activating_enzyme_7	TTC709_SOFT_TISSUE	0.62	1	1.8896	TRUE	0	0	0	2	0	TRUE	ACH-000597
TTC709_SOFT_TISSUE	LINC01014--KCNMB2	48	31	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	136	11	0.37	0.88	0.5669	0.3661	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	TTC709_SOFT_TISSUE	0.37	0.88	0.933	FALSE	11	60	26	37	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-TA--MT-TC	55	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6496	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TTC709_SOFT_TISSUE	1	1	0.6496	FALSE	462	80	0	856	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	TIMM23--RP11-464F9.1	52	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	498	3	0.1	0.95	0.6141	0.0354	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TTC709_SOFT_TISSUE	0.1	0.95	0.6495	TRUE	519	3926	326	965	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	RP11-444D3.1--SOX5	44	20	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	30	1	0.68	0.5196	0.2362	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	TTC709_SOFT_TISSUE	0.68	1	0.7558	TRUE	477	1352	189	275	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	LINC01014--KCNMB2	27	33	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	136	13	0.31	0.82	0.3189	0.3897	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	TTC709_SOFT_TISSUE	0.31	0.82	0.7086	FALSE	12	33	18	33	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	ZNF654--HMGB2	35	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4134	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TTC709_SOFT_TISSUE	1	1	0.4134	TRUE	0	0	0	518	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	RP11-123O10.4--GRIP1	24	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2834	0.0591	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TTC709_SOFT_TISSUE	1	1	0.3425	FALSE	416	2512	207	587	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	RP11-680G10.1--GSE1	22	12	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	17	1	0.67	0.2598	0.1417	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TTC709_SOFT_TISSUE	0.67	1	0.4015	TRUE	458	1351	185	561	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	NIPA2--POLA1	21	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.248	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	TTC709_SOFT_TISSUE	1	1	0.248	TRUE	46	1352	75	139	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	PLXDC1--TAF13	21	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.248	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	TTC709_SOFT_TISSUE	1	1	0.248	TRUE	7	10	0	216	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	16	16	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	7	4	0.82	0.89	0.189	0.189	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TTC709_SOFT_TISSUE	0.82	0.89	0.378	FALSE	515	4851	409	746	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	C15orf57--CBX3	13	17	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	130	37	0.19	0.45	0.1535	0.2008	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TTC709_SOFT_TISSUE	0.19	0.45	0.3543	TRUE	267	562	48	632	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	10	27	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	7	0	0.84	1	0.1181	0.3189	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TTC709_SOFT_TISSUE	0.84	1	0.437	FALSE	407	2205	196	549	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	NPM1P24--SET	14	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	48	2176	0.24	0.01	0.1653	0.0118	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TTC709_SOFT_TISSUE	0.01	0.24	0.1771	TRUE	0	0	0	434	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-ND6--MT-TE	13	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1535	0.0354	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC709_SOFT_TISSUE	1	1	0.1889	FALSE	499	1288	110	792	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-ND6--MT-TE	12	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1417	0.0354	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC709_SOFT_TISSUE	1	1	0.1771	FALSE	499	1288	110	792	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	RP11-680G10.1--GSE1	10	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	29	1	0.4	0.1181	0.1063	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TTC709_SOFT_TISSUE	0.4	1	0.2244	TRUE	465	1949	224	605	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-ND6--MT-TE	8	14	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0945	0.1653	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC709_SOFT_TISSUE	0.88	1	0.2598	FALSE	499	1288	110	792	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-ATP6--MT-CO1	10	4	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10861	28778	0	0	0.1181	0.0472	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TTC709_SOFT_TISSUE	0	0	0.1653	FALSE	183	104	9	328	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-CO3--MT-ATP6	11	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1299	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TTC709_SOFT_TISSUE	1	1	0.1299	FALSE	189	492	56	216	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-CO3--MT-ATP6	3	32	MT-CO3	1459	chrM:9665:+	MT-ATP6	4899	chrM:8641:+	INCL_NON_REF_SPLICE	YES	9	0	0.8	1	0.0354	0.3779	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TTC709_SOFT_TISSUE	0.8	1	0.4133	FALSE	189	492	56	216	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	4	27	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	7	0	0.82	1	0.0472	0.3189	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TTC709_SOFT_TISSUE	0.82	1	0.3661	FALSE	275	511	55	178	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	C15orf57--CBX3	7	13	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	128	37	0.14	0.35	0.0827	0.1535	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TTC709_SOFT_TISSUE	0.14	0.35	0.2362	TRUE	267	562	48	632	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	CALM3--MT-ND4L	8	9	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2753	0	0.01	1	0.0945	0.1063	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TTC709_SOFT_TISSUE	0.01	1	0.2008	FALSE	1	1	0	107	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	RP11-444D3.1--SOX5	6	17	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	30	1	0.43	0.0709	0.2008	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	TTC709_SOFT_TISSUE	0.43	1	0.2717	TRUE	274	363	69	150	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-CO3--MT-ATP6	4	24	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	3	46	0.9	0.38	0.0472	0.2834	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TTC709_SOFT_TISSUE	0.38	0.9	0.3306	FALSE	189	492	56	216	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-ND6--MT-TE	4	24	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0472	0.2834	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC709_SOFT_TISSUE	0.97	1	0.3306	FALSE	499	1288	110	792	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	2	32	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	5	0	0.87	1	0.0236	0.3779	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TTC709_SOFT_TISSUE	0.87	1	0.4015	FALSE	192	492	57	212	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	4	21	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	4	0.83	0.86	0.0472	0.248	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TTC709_SOFT_TISSUE	0.83	0.86	0.2952	FALSE	467	2173	244	435	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	RP11-166D19.1--DNM3OS	8	1	RP11-166D19.1	5868	chr11:121971082:-	DNM3OS	18442	chr1:172113577:-	ONLY_REF_SPLICE	YES	108	53	0.08	0.15	0.0945	0.0118	GTEx_FI:{Ovary=[count:4=pct:7.5],Blood_Vessel=[count:3=pct:0.8],Thyroid=[count:2=pct:1.1],Uterus=[count:1=pct:2.3],Esophagus=[count:1=pct:0.2]},RP11-166D19.1->chr11:121899063-121987031:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	TTC709_SOFT_TISSUE	0.08	0.15	0.1063	TRUE	11	20	1	11	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	RP11-444D3.1--SOX5	3	21	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	32	1	0.43	0.0354	0.248	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	TTC709_SOFT_TISSUE	0.43	1	0.2834	TRUE	160	277	29	98	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-CO3--MT-ATP6	5	12	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	3	6	0.85	0.74	0.0591	0.1417	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TTC709_SOFT_TISSUE	0.74	0.85	0.2008	FALSE	189	492	56	216	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-CO3--MT-ATP6	4	16	MT-CO3	1113	chrM:9319:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.0472	0.189	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TTC709_SOFT_TISSUE	0.91	1	0.2362	FALSE	189	492	56	216	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-ND6--MT-TE	3	20	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0354	0.2362	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC709_SOFT_TISSUE	0.88	1	0.2716	FALSE	499	1288	110	792	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-ATP6--MT-CO1	7	3	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	10757	27862	0	0	0.0827	0.0354	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TTC709_SOFT_TISSUE	0	0	0.1181	FALSE	183	104	9	328	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-ND6--MT-TE	4	14	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.0472	0.1653	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC709_SOFT_TISSUE	0.86	1	0.2125	FALSE	499	1288	110	792	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-TA--MT-TC	7	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0827	0.0236	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TTC709_SOFT_TISSUE	1	1	0.1063	FALSE	462	80	0	856	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	AP000525.9--LA16c-60G3.6	7	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0827	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	TTC709_SOFT_TISSUE	1	1	0.0827	TRUE	0	42	0	133	42	FALSE	ACH-000597
TTC709_SOFT_TISSUE	PCDH15--RP11-168O22.1	6	4	PCDH15	1318	chr10:57387385:-	RP11-168O22.1	68273	chr10:57335471:-	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0709	0.0472	GTEx_FI:{Adrenal_Gland=[count:35=pct:41.2],Pituitary=[count:2=pct:3.8],Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3]},PCDH15->chr10:55562531-57387702:-,protocadherin-related_15,RP11-168O22.1->chr10:57007515-57356993:-	TTC709_SOFT_TISSUE	0.91	1	0.1181	TRUE	32	58	0	7	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	PCDH15--RP11-168O22.1	6	3	PCDH15	1318	chr10:57387385:-	RP11-168O22.1	69335	chr10:57125973:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0709	0.0354	GTEx_FI:{Adrenal_Gland=[count:35=pct:41.2],Pituitary=[count:2=pct:3.8],Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3]},PCDH15->chr10:55562531-57387702:-,protocadherin-related_15,RP11-168O22.1->chr10:57007515-57356993:-	TTC709_SOFT_TISSUE	0.9	1	0.1063	TRUE	13	14	0	3	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-TA--MT-TC	6	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0709	0.0118	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TTC709_SOFT_TISSUE	1	1	0.0827	FALSE	462	80	0	856	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	NPM1P24--SET	6	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	48	1967	0.13	0	0.0709	0.0118	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TTC709_SOFT_TISSUE	0	0.13	0.0827	FALSE	0	0	0	434	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-CO3--MT-ATP6	5	4	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	4	1	0.69	0.9	0.0591	0.0472	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TTC709_SOFT_TISSUE	0.69	0.9	0.1063	FALSE	189	492	56	216	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	RP11-275N1.1--NEBL	6	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0709	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	TTC709_SOFT_TISSUE	1	1	0.0709	TRUE	0	0	0	21	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-ATP6--MT-CO1	5	3	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	10152	24676	0	0	0.0591	0.0354	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TTC709_SOFT_TISSUE	0	0	0.0945	FALSE	183	104	9	328	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-CO3--MT-ATP6	4	7	MT-CO3	1051	chrM:9257:+	MT-ATP6	5269	chrM:9011:+	INCL_NON_REF_SPLICE	YES	0	11	1	0.5	0.0472	0.0827	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TTC709_SOFT_TISSUE	0.5	1	0.1299	FALSE	189	492	56	216	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-ND6--MT-TE	3	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0354	0.1299	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC709_SOFT_TISSUE	0.93	1	0.1653	FALSE	499	1288	110	792	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	HSPG2--MT-ND4L	4	6	HSPG2	55889	chr1:22149821:-	MT-ND4L	59974	chrM:10471:+	INCL_NON_REF_SPLICE	YES	753	0	0.01	1	0.0472	0.0709	HSPG2->Oncogene{Bushman},chr1:22148738-22263790:-,heparan_sulfate_proteoglycan_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TTC709_SOFT_TISSUE	0.01	1	0.1181	FALSE	0	0	0	1	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	RP11-275N1.1--NEBL	5	2	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	16	20	0.3	0.26	0.0591	0.0236	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	TTC709_SOFT_TISSUE	0.26	0.3	0.0827	TRUE	0	2	0	25	2	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-CO3--MT-ATP6	4	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	3	1	0.73	0.89	0.0472	0.0472	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TTC709_SOFT_TISSUE	0.73	0.89	0.0944	FALSE	189	492	56	216	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC709_SOFT_TISSUE	1	1	0.0591	FALSE	499	1288	110	792	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-ATP6--MT-CO1	4	3	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10523	28400	0	0	0.0472	0.0354	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TTC709_SOFT_TISSUE	0	0	0.0826	FALSE	183	104	9	328	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-CO1--MT-ND2	4	2	MT-CO1	1533	chrM:6436:+	MT-ND2	5968	chrM:4895:+	INCL_NON_REF_SPLICE	NO	25524	14349	0	0	0.0472	0.0236	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TTC709_SOFT_TISSUE	0	0	0.0708	FALSE	55	19	1	13	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-ND6--MT-TE	3	6	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0.0709	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC709_SOFT_TISSUE	1	1	0.1063	FALSE	499	1288	110	792	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-ATP6--MT-CO1	3	5	MT-ATP6	1136	chrM:8662:+	MT-CO1	5337	chrM:6559:+	INCL_NON_REF_SPLICE	YES	11316	29054	0	0	0.0354	0.0591	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TTC709_SOFT_TISSUE	0	0	0.0945	FALSE	183	104	9	328	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-CO1--MT-ND2	3	2	MT-CO1	1642	chrM:6545:+	MT-ND2	6134	chrM:5061:+	INCL_NON_REF_SPLICE	YES	28127	9476	0	0	0.0354	0.0236	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TTC709_SOFT_TISSUE	0	0	0.059	FALSE	55	19	1	13	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	ARMC9--PSMD1	3	1	ARMC9	10595	chr2:232104754:+	PSMD1	57973	chr2:232010954:+	ONLY_REF_SPLICE	YES	729	495	0.01	0.01	0.0354	0.0118	{Klijn_CCL:Skin=3,Other=1,Brain=1},LOCAL_REARRANGEMENT:+:[25719],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1	TTC709_SOFT_TISSUE	0.01	0.01	0.0472	FALSE	0	1	0	1	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-CO1--MT-ND2	3	1	MT-CO1	1478	chrM:6381:+	MT-ND2	6333	chrM:5260:+	INCL_NON_REF_SPLICE	YES	21977	2060	0	0	0.0354	0.0118	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TTC709_SOFT_TISSUE	0	0	0.0472	FALSE	55	19	1	13	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MT-CO1--MT-ND2	3	1	MT-CO1	1585	chrM:6488:+	MT-ND2	6197	chrM:5124:+	INCL_NON_REF_SPLICE	YES	24283	6415	0	0	0.0354	0.0118	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TTC709_SOFT_TISSUE	0	0	0.0472	FALSE	55	19	1	13	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	48	1984	0.08	0	0.0354	0.0118	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TTC709_SOFT_TISSUE	0	0.08	0.0472	FALSE	0	0	0	434	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TTC709_SOFT_TISSUE	1	1	0.0354	TRUE	0	0	0	434	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	WIPF1--CHN1	3	0	WIPF1	1143	chr2:175547502:-	CHN1	41509	chr2:175689246:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	WIPF1->WAS/WASL_interacting_protein_family_member_1,chr2:175424300-175547644:-,CHN1->Oncogene{Bushman},chimerin_1,chr2:175664091-175870097:-	TTC709_SOFT_TISSUE	1	1	0.0354	TRUE	0	0	0	2	0	TRUE	ACH-000597
TTC709_SOFT_TISSUE	ARMC9--PSMD1	2	1	ARMC9	12884	chr2:232123815:+	PSMD1	59185	chr2:232018278:+	ONLY_REF_SPLICE	YES	579	661	0.01	0	0.0236	0.0118	{Klijn_CCL:Skin=3,Other=1,Brain=1},LOCAL_REARRANGEMENT:+:[25719],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1	TTC709_SOFT_TISSUE	0	0.01	0.0354	FALSE	0	0	0	1	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	PHF17--C4orf33	2	1	PHF17	5826	chr4:129752965:+	C4orf33	30099	chr4:130023757:+	ONLY_REF_SPLICE	YES	72	2	0.04	0.6	0.0236	0.0118	PHF17->chr4:129730779-129796379:+,C4orf33->chr4:130014472-130037795:+,chromosome_4_open_reading_frame_33	TTC709_SOFT_TISSUE	0.04	0.6	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000597
TTC709_SOFT_TISSUE	ARMC9--PSMD1	2	0	ARMC9	9496	chr2:232100094:+	PSMD1	57973	chr2:232010954:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	{Klijn_CCL:Skin=3,Other=1,Brain=1},LOCAL_REARRANGEMENT:+:[25719],ARMC9->armadillo_repeat_containing_9,chr2:232063260-232239548:+,PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1	TTC709_SOFT_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000597
TTC709_SOFT_TISSUE	DENND5A--EWSR1	2	0	DENND5A	24013	chr11:9166542:-	EWSR1	51798	chr22:29694723:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	DENND5A->DENN_domain_containing_5A,chr11:9160372-9286937:-,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	TTC709_SOFT_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000597
TTC709_SOFT_TISSUE	FUS--LUC7L2	2	0	FUS	4900	chr16:31196500:+	LUC7L2	25752	chr7:139106909:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	TTC709_SOFT_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000597
TTC709_SOFT_TISSUE	IRS1--RP11-395N3.2	2	0	IRS1	5771	chr2:227659705:-	RP11-395N3.2	17031	chr2:227672202:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	LOCAL_INVERSION:-:+:[387],IRS1->chr2:227596033-227664475:-,insulin_receptor_substrate_1,RP11-395N3.2->chr2:227664862-227675745:+	TTC709_SOFT_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000597
TTC709_SOFT_TISSUE	NEAT1--ABR	2	0	NEAT1	1610	chr11:65190854:+	ABR	39354	chr17:1003975:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding),ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	TTC709_SOFT_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000597
TTC709_SOFT_TISSUE	SCARB1--UBC	2	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	TTC709_SOFT_TISSUE	1	1	0.0236	TRUE	55	66	6	101	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	30164	chr10:75439864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TTC709_SOFT_TISSUE	1	1	0.0236	TRUE	0	0	0	2	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	UVRAG--MYO6	2	0	UVRAG	16943	chr11:75715133:+	MYO6	63311	chr6:76617322:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,MYO6->chr6:76458909-76629254:+,myosin_VI	TTC709_SOFT_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000597
TTC709_SOFT_TISSUE	RPS6KB1--VMP1	1	3	RPS6KB1	7326	chr17:57992064:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	167	798	0.02	0	0.0118	0.0354	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TTC709_SOFT_TISSUE	0	0.02	0.0472	FALSE	0	4	1	7	3	FALSE	ACH-000597
TTC709_SOFT_TISSUE	YWHAE--CRK	1	3	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	3512	235	0	0.02	0.0118	0.0354	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	TTC709_SOFT_TISSUE	0	0.02	0.0472	FALSE	6	50	7	115	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	CGRRF1--CNIH1	1	2	CGRRF1	1252	chr14:54976781:+	CNIH1	13628	chr14:54903155:-	ONLY_REF_SPLICE	NO	586	1607	0.01	0	0.0118	0.0236	LOCAL_INVERSION:+:-:[68381],CGRRF1->cell_growth_regulator_with_ring_finger_domain_1,chr14:54976530-55005567:+,CNIH1->chr14:54893654-54908149:-,cornichon_family_AMPA_receptor_auxiliary_protein_1	TTC709_SOFT_TISSUE	0	0.01	0.0354	FALSE	0	0	0	1	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	GPR126--VTA1	1	2	GPR126	2987	chr6:142630781:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	YES	536	341	0.01	0.01	0.0118	0.0236	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	TTC709_SOFT_TISSUE	0.01	0.01	0.0354	FALSE	0	2	0	15	1	FALSE	ACH-000597
TTC709_SOFT_TISSUE	TULP4--RP11-732M18.3	1	2	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	9	1	0.25	0.75	0.0118	0.0236	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	TTC709_SOFT_TISSUE	0.25	0.75	0.0354	TRUE	126	140	6	21	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	AP000662.4--RPS11	1	1	AP000662.4	1649	chr11:57406145:+	RPS11	12347	chr19:50000777:+	ONLY_REF_SPLICE	YES	0	4934	1	0	0.0118	0.0118	AP000662.4->chr11:57405497-57420263:+,RPS11->chr19:49999622-50002946:+,ribosomal_protein_S11	TTC709_SOFT_TISSUE	0	1	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	48	53	0.04	0.04	0.0118	0.0118	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	TTC709_SOFT_TISSUE	0.04	0.04	0.0236	FALSE	118	557	29	88	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	DGKB--MEOX2	1	1	DGKB	4114	chr7:14880819:-	MEOX2	43652	chr7:15666543:-	ONLY_REF_SPLICE	YES	20	875	0.09	0	0.0118	0.0118	DGKB->chr7:14184674-15014402:-,diacylglycerol_kinase_beta,MEOX2->chr7:15650837-15726437:-,mesenchyme_homeobox_2	TTC709_SOFT_TISSUE	0	0.09	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	MAP3K2--IWS1	1	1	MAP3K2	6378	chr2:128093446:-	IWS1	34369	chr2:128263328:-	ONLY_REF_SPLICE	NO	8	142	0.2	0.01	0.0118	0.0118	LOCAL_REARRANGEMENT:-:[47742],MAP3K2->chr2:128056306-128146041:-,mitogen-activated_protein_kinase_kinase_kinase_2,IWS1->IWS1,_SUPT6H_interacting_protein,chr2:128193783-128284462:-	TTC709_SOFT_TISSUE	0.01	0.2	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	PLOD2--UBE2R2	1	1	PLOD2	9980	chr3:145820542:-	UBE2R2	29774	chr9:33886879:+	ONLY_REF_SPLICE	YES	1257	223	0	0.01	0.0118	0.0118	PLOD2->chr3:145787227-145881440:-,procollagen-lysine,2-oxoglutarate_5-dioxygenase_2,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	TTC709_SOFT_TISSUE	0	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	PRDM10--APLP2	1	1	PRDM10	1114	chr11:129872617:-	APLP2	37010	chr11:129979324:+	ONLY_REF_SPLICE	YES	8	1947	0.2	0	0.0118	0.0118	LOCAL_INVERSION:-:+:[67002],PRDM10->PR_domain_10,chr11:129769601-129872730:-,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	TTC709_SOFT_TISSUE	0	0.2	0.0236	FALSE	0	0	0	2	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	RP13-188A5.1--KLF8	1	1	RP13-188A5.1	1678	chrX:55935233:+	KLF8	6745	chrX:56259591:+	ONLY_REF_SPLICE	YES	1	1	0.67	0.67	0.0118	0.0118	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	TTC709_SOFT_TISSUE	0.67	0.67	0.0236	TRUE	3	12	3	6	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	TECRL--LINC00882	1	1	TECRL	11322	chr4:65155428:-	LINC00882	30115	chr3:106646841:-	ONLY_REF_SPLICE	YES	1221	1	0	0.67	0.0118	0.0118	TECRL->chr4:65140975-65275186:-,trans-2,3-enoyl-CoA_reductase-like,LINC00882->chr3:106555658-106959488:-,long_intergenic_non-protein_coding_RNA_882	TTC709_SOFT_TISSUE	0	0.67	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	USP32--BCAS3	1	1	USP32	4918	chr17:58422842:-	BCAS3	58127	chr17:58945937:+	ONLY_REF_SPLICE	NO	46	58	0.04	0.03	0.0118	0.0118	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Putamen_(basal_ganglia)=2},USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	TTC709_SOFT_TISSUE	0.03	0.04	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000597
TTC709_SOFT_TISSUE	WNT5B--ERC1	1	1	WNT5B	1119	chr12:1639175:+	ERC1	40978	chr12:1372200:+	ONLY_REF_SPLICE	YES	10	109	0.17	0.02	0.0118	0.0118	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[33958],WNT5B->Wnt_family_member_5B,chr12:1639057-1756409:+,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	TTC709_SOFT_TISSUE	0.02	0.17	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000597
LNCAPCLONEFGC_PROSTATE	AP003900.6--AC011718.2	107	7	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	2	0	0.98	1	1.4671	0.096	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LNCAPCLONEFGC_PROSTATE	0.98	1	1.5631	TRUE	0	3	0	38	3	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MRPS10--HP	98	20	MRPS10	6183	chr6:42176038:-	HP	16203	chr16:72094011:+	INCL_NON_REF_SPLICE	YES	47	0	0.72	1	1.3437	0.2742	MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10,HP->chr16:72088491-72094954:+,haptoglobin	LNCAPCLONEFGC_PROSTATE	0.72	1	1.6179	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	RERE--PIK3CD	78	25	RERE	24297	chr1:8482787:-	PIK3CD	44842	chr1:9770482:+	ONLY_REF_SPLICE	YES	22	12	0.82	0.9	1.0695	0.3428	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,PIK3CD->Oncogene{Bushman},chr1:9711790-9789172:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_delta	LNCAPCLONEFGC_PROSTATE	0.82	0.9	1.4123	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	CCSER2--CYP2C19	61	47	CCSER2	1223	chr10:86088564:+	CYP2C19	41112	chr10:96602594:+	ONLY_REF_SPLICE	YES	5	0	0.96	1	0.8364	0.6444	CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,CYP2C19->chr10:96447911-96613017:+,cytochrome_P450_family_2_subfamily_C_member_19	LNCAPCLONEFGC_PROSTATE	0.96	1	1.4808	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	TIMM23B--LINC00843	68	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9324	0.192	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LNCAPCLONEFGC_PROSTATE	1	1	1.1244	TRUE	508	994	45	981	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	GPS2--MPP2	56	37	GPS2	1606	chr17:7218278:-	MPP2	15757	chr17:41975748:-	ONLY_REF_SPLICE	YES	52	12	0.64	0.89	0.7678	0.5073	{Klijn_CCL:Other=1},GPS2->G_protein_pathway_suppressor_2,chr17:7214643-7218883:-,MPP2->chr17:41952725-41987068:-,membrane_palmitoylated_protein_2	LNCAPCLONEFGC_PROSTATE	0.64	0.89	1.2751	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MT-TA--MT-TN	47	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6444	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	LNCAPCLONEFGC_PROSTATE	1	1	0.6444	FALSE	369	2501	205	193	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MT-TA--MT-TC	40	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5484	0.0411	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LNCAPCLONEFGC_PROSTATE	1	1	0.5895	FALSE	462	80	0	856	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	FAM117B--BMPR2	38	9	FAM117B	1611	chr2:203500511:+	BMPR2	18612	chr2:203329532:+	ONLY_REF_SPLICE	YES	7	10	0.87	0.82	0.521	0.1234	LOCAL_REARRANGEMENT:+:[67427],FAM117B->chr2:203499901-203634480:+,family_with_sequence_similarity_117_member_B,BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+	LNCAPCLONEFGC_PROSTATE	0.82	0.87	0.6444	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	SNX9--CYP2C19	35	17	SNX9	4471	chr6:158296208:+	CYP2C19	37228	chr10:96580253:+	ONLY_REF_SPLICE	YES	35	0	0.6	1	0.4799	0.2331	{Klijn_CCL:Other=1},SNX9->chr6:158244296-158366109:+,sorting_nexin_9,CYP2C19->chr10:96447911-96613017:+,cytochrome_P450_family_2_subfamily_C_member_19	LNCAPCLONEFGC_PROSTATE	0.6	1	0.713	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	TIMM23--RP11-464F9.1	38	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.521	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LNCAPCLONEFGC_PROSTATE	1	1	0.521	TRUE	519	3926	326	965	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MIPOL1--DGKB	30	20	MIPOL1	25318	chr14:37969343:+	DGKB	77921	chr7:14188863:-	ONLY_REF_SPLICE	YES	27	0	0.65	1	0.4113	0.2742	chimerdb_pubmed{LNCaP},MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1,DGKB->chr7:14184674-15014402:-,diacylglycerol_kinase_beta	LNCAPCLONEFGC_PROSTATE	0.65	1	0.6855	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	KANSL1--ARL17B	27	11	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	33	30	0.54	0.56	0.3702	0.1508	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	LNCAPCLONEFGC_PROSTATE	0.54	0.56	0.521	TRUE	181	1564	124	196	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	OR51S1--TP53I11	23	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3154	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	LNCAPCLONEFGC_PROSTATE	1	1	0.3154	TRUE	402	216	10	229	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MT-TA--MT-TN	10	44	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1371	0.6033	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	LNCAPCLONEFGC_PROSTATE	1	1	0.7404	FALSE	369	2501	205	193	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	DLEU2--PSPC1	17	9	DLEU2	5811	chr13:50642233:-	PSPC1	14940	chr13:20356931:-	ONLY_REF_SPLICE	YES	9	52	0.74	0.33	0.2331	0.1234	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	LNCAPCLONEFGC_PROSTATE	0.33	0.74	0.3565	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	HSP90AB1--MT-RNR2	18	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2468	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LNCAPCLONEFGC_PROSTATE	1	1	0.2468	FALSE	13	9	0	364	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	ITPKC--PPFIA3	14	4	ITPKC	1721	chr19:41223728:+	PPFIA3	19956	chr19:49637051:+	INCL_NON_REF_SPLICE	YES	6	9	0.75	0.67	0.192	0.0548	ITPKC->chr19:41223008-41246765:+,inositol-trisphosphate_3-kinase_C,PPFIA3->PTPRF_interacting_protein_alpha_3,chr19:49622646-49654283:+	LNCAPCLONEFGC_PROSTATE	0.67	0.75	0.2468	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	CCSER2--CYP2C19	3	47	CCSER2	1223	chr10:86088564:+	CYP2C19	31659	chr10:96484103:+	ONLY_REF_SPLICE	NO	5	0	0.91	1	0.0411	0.6444	CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,CYP2C19->chr10:96447911-96613017:+,cytochrome_P450_family_2_subfamily_C_member_19	LNCAPCLONEFGC_PROSTATE	0.91	1	0.6855	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MT-TA--MT-TN	7	29	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.096	0.3976	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	LNCAPCLONEFGC_PROSTATE	1	1	0.4936	FALSE	369	2501	205	193	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	AP003900.6--AC011718.2	11	11	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	5	0	0.81	1	0.1508	0.1508	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LNCAPCLONEFGC_PROSTATE	0.81	1	0.3016	TRUE	0	5	0	45	5	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MT-TA--MT-TN	4	38	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0.521	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	LNCAPCLONEFGC_PROSTATE	1	1	0.5758	FALSE	369	2501	205	193	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	RP11-403B2.7--RP11-403B2.6	8	16	RP11-403B2.7	1254	chr15:20961259:-	RP11-403B2.6	7754	chr15:20965236:-	ONLY_REF_SPLICE	YES	7	18	0.77	0.57	0.1097	0.2194	GTEx_FI:{Brain=[count:17=pct:2.6],Esophagus=[count:15=pct:3.7],Blood_Vessel=[count:8=pct:2.2],Skin=[count:7=pct:2.2],Thyroid=[count:5=pct:2.8],Prostate=[count:4=pct:6.6],Lung=[count:4=pct:2.4],Heart=[count:3=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Blood=[count:2=pct:1.1],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},LOCAL_REARRANGEMENT:-:[3128],RP11-403B2.7->chr15:20935076-20961512:-,RP11-403B2.6->chr15:20964640-20980123:-	LNCAPCLONEFGC_PROSTATE	0.57	0.77	0.3291	TRUE	22	66	5	11	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	GPR158--RP11-80K21.3	11	3	GPR158	3367	chr10:25510086:+	RP11-80K21.3	25310	chr10:25406221:+	ONLY_REF_SPLICE	YES	68	0	0.17	1	0.1508	0.0411	LOCAL_REARRANGEMENT:+:[13826],GPR158->G_protein-coupled_receptor_158,chr10:25463991-25891155:+,RP11-80K21.3->chr10:25401987-25450165:+	LNCAPCLONEFGC_PROSTATE	0.17	1	0.1919	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MT-ND6--MT-TE	10	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1371	0.0274	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LNCAPCLONEFGC_PROSTATE	1	1	0.1645	FALSE	499	1288	110	792	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MT-TA--MT-TN	4	26	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0.3565	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	LNCAPCLONEFGC_PROSTATE	1	1	0.4113	FALSE	369	2501	205	193	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1234	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LNCAPCLONEFGC_PROSTATE	1	1	0.1234	TRUE	0	0	0	434	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MSH2--MSH6	7	6	MSH2	9609	chr2:47672796:+	MSH6	31885	chr2:47984828:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.096	0.0823	PROTCLUST,MSH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47630108-47789450:+,mutS_homolog_2,MSH6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47922669-48037240:+,mutS_homolog_6	LNCAPCLONEFGC_PROSTATE	0.93	1	0.1783	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	EEF2--RPS28	8	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1097	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	LNCAPCLONEFGC_PROSTATE	1	1	0.1097	TRUE	0	0	0	100	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MT-TA--MT-TN	8	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1097	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	LNCAPCLONEFGC_PROSTATE	1	1	0.1097	FALSE	369	2501	205	193	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	DLEU2--PSPC1	7	2	DLEU2	5811	chr13:50642233:-	PSPC1	16346	chr13:20346683:-	ONLY_REF_SPLICE	YES	9	51	0.5	0.15	0.096	0.0274	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	LNCAPCLONEFGC_PROSTATE	0.15	0.5	0.1234	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MT-ND6--MT-TE	5	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0.1371	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LNCAPCLONEFGC_PROSTATE	1	1	0.2057	FALSE	499	1288	110	792	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MT-TA--MT-TN	3	18	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0.2468	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	LNCAPCLONEFGC_PROSTATE	1	1	0.2879	FALSE	369	2501	205	193	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MT-TA--MT-TN	4	13	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0.1782	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	LNCAPCLONEFGC_PROSTATE	1	1	0.233	FALSE	369	2501	205	193	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	AP003900.6--AC011718.2	6	4	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0823	0.0548	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LNCAPCLONEFGC_PROSTATE	0.83	1	0.1371	TRUE	0	1	0	26	1	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MT-TA--MT-TN	7	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.096	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	LNCAPCLONEFGC_PROSTATE	1	1	0.096	FALSE	369	2501	205	193	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MYO6--SENP6	5	7	MYO6	36985	chr6:76624777:+	SENP6	73032	chr6:76423229:+	INCL_NON_REF_SPLICE	YES	838	110	0.01	0.1	0.0686	0.096	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[30912],MYO6->chr6:76458909-76629254:+,myosin_VI,SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+	LNCAPCLONEFGC_PROSTATE	0.01	0.1	0.1646	TRUE	0	0	0	1	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0823	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LNCAPCLONEFGC_PROSTATE	1	1	0.0823	TRUE	458	1351	185	561	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MT-TA--MT-TC	5	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0.0411	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LNCAPCLONEFGC_PROSTATE	1	1	0.1097	FALSE	462	80	0	856	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	DLEU2--PSPC1	3	9	DLEU2	5811	chr13:50642233:-	PSPC1	14889	chr13:20356982:-	INCL_NON_REF_SPLICE	YES	9	2	0.57	0.86	0.0411	0.1234	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	LNCAPCLONEFGC_PROSTATE	0.57	0.86	0.1645	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	RP11-358H9.1--RP11-400N13.1	5	0	RP11-358H9.1	2827	chr1:222626082:-	RP11-400N13.1	9106	chr1:222262907:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0686	0	NEIGHBORS[65306],RP11-358H9.1->chr1:222626082-222628047:-,RP11-400N13.1->chr1:222262511-222560776:-	LNCAPCLONEFGC_PROSTATE	1	1	0.0686	FALSE	0	22	0	9	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	CCDC43--YBX2	4	1	CCDC43	3529	chr17:42759296:-	YBX2	15936	chr17:7193854:-	INCL_NON_REF_SPLICE	YES	55	3	0.08	0.62	0.0548	0.0137	CCDC43->chr17:42750437-42767147:-,coiled-coil_domain_containing_43,YBX2->Y-box_binding_protein_2,chr17:7191571-7197934:-	LNCAPCLONEFGC_PROSTATE	0.08	0.62	0.0685	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LNCAPCLONEFGC_PROSTATE	1	1	0.0548	FALSE	13	9	0	364	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MT-TA--MT-TN	4	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	LNCAPCLONEFGC_PROSTATE	1	1	0.0548	FALSE	369	2501	205	193	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LNCAPCLONEFGC_PROSTATE	1	1	0.0548	TRUE	0	0	0	434	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LNCAPCLONEFGC_PROSTATE	1	1	0.0548	TRUE	0	0	0	434	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MT-ND6--MT-TE	3	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0.0411	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LNCAPCLONEFGC_PROSTATE	1	1	0.0822	FALSE	499	1288	110	792	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	TTC6--MIPOL1	3	2	TTC6	2242	chr14:38075947:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	YES	132	43	0.04	0.1	0.0411	0.0274	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	LNCAPCLONEFGC_PROSTATE	0.04	0.1	0.0685	TRUE	0	13	0	3	11	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	AP003900.6--AC011718.2	3	1	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	2	12	0.67	0.25	0.0411	0.0137	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LNCAPCLONEFGC_PROSTATE	0.25	0.67	0.0548	TRUE	0	1	0	21	1	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	KLK3--EEF2	3	0	KLK3	4248	chr19:51361418:+	EEF2	17682	chr19:3977480:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.27%,KLK3->chr19:51358171-51364020:+,kallikrein_related_peptidase_3,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	LNCAPCLONEFGC_PROSTATE	1	1	0.0411	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MT-TA--MT-TN	3	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	LNCAPCLONEFGC_PROSTATE	1	1	0.0411	FALSE	369	2501	205	193	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	TTC6--MIPOL1	3	0	TTC6	1162	chr14:38065213:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0411	0	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	LNCAPCLONEFGC_PROSTATE	1	1	0.0411	TRUE	0	9	0	5	8	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	FAM117B--BMPR2	2	1	FAM117B	1611	chr2:203500511:+	BMPR2	19783	chr2:203332242:+	ONLY_REF_SPLICE	YES	7	28	0.3	0.1	0.0274	0.0137	LOCAL_REARRANGEMENT:+:[67427],FAM117B->chr2:203499901-203634480:+,family_with_sequence_similarity_117_member_B,BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+	LNCAPCLONEFGC_PROSTATE	0.1	0.3	0.0411	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	NCAM2--CHMP1A	2	1	NCAM2	23923	chr21:22849792:+	CHMP1A	40510	chr16:89713739:-	ONLY_REF_SPLICE	YES	699	132	0	0.02	0.0274	0.0137	NCAM2->chr21:22370633-22915650:+,neural_cell_adhesion_molecule_2,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	LNCAPCLONEFGC_PROSTATE	0	0.02	0.0411	FALSE	0	0	0	1	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	TTC6--MIPOL1	2	1	TTC6	5307	chr14:38092208:+	MIPOL1	90133	chr14:38016110:+	ONLY_REF_SPLICE	YES	92	27	0.03	0.1	0.0274	0.0137	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	LNCAPCLONEFGC_PROSTATE	0.03	0.1	0.0411	TRUE	0	4	0	2	3	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	CCSER2--TBC1D12	2	0	CCSER2	13658	chr10:86230214:+	TBC1D12	29139	chr10:96201653:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,TBC1D12->TBC1_domain_family_member_12,chr10:96162261-96295687:+	LNCAPCLONEFGC_PROSTATE	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	FRYL--OCIAD2	2	0	FRYL	4609	chr4:48686690:-	OCIAD2	84248	chr4:48906628:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	YOSHIHARA_TCGA_num_samples[LUAD:1|PRAD:1],{Klijn_CCL:Kidney=1},FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,OCIAD2->OCIA_domain_containing_2,chr4:48887036-48908954:-	LNCAPCLONEFGC_PROSTATE	1	1	0.0274	TRUE	0	1	0	1	1	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	GPS2--MPP2	2	0	GPS2	1234	chr17:7218650:-	MPP2	15757	chr17:41975748:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	{Klijn_CCL:Other=1},GPS2->G_protein_pathway_suppressor_2,chr17:7214643-7218883:-,MPP2->chr17:41952725-41987068:-,membrane_palmitoylated_protein_2	LNCAPCLONEFGC_PROSTATE	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	GTF3C5--RNF10	2	0	GTF3C5	1476	chr9:135906551:+	RNF10	34221	chr12:121013434:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	GTF3C5->chr9:135906076-135933890:+,general_transcription_factor_IIIC_subunit_5,RNF10->chr12:120971283-121015397:+,ring_finger_protein_10	LNCAPCLONEFGC_PROSTATE	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	NCAM2--PPM1K	2	0	NCAM2	23923	chr21:22849792:+	PPM1K	46412	chr4:89186287:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	NCAM2->chr21:22370633-22915650:+,neural_cell_adhesion_molecule_2,PPM1K->chr4:89178772-89205921:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1K	LNCAPCLONEFGC_PROSTATE	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	RP11-356O9.1--MIPOL1	2	0	RP11-356O9.1	1316	chr14:38033567:+	MIPOL1	15743	chr14:37737863:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	LOCAL_REARRANGEMENT:+:[11686],RP11-356O9.1->chr14:38033252-38048330:+,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	LNCAPCLONEFGC_PROSTATE	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LNCAPCLONEFGC_PROSTATE	1	1	0.0274	TRUE	465	1949	224	605	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	ZNF738--CHMP1A	2	0	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	LNCAPCLONEFGC_PROSTATE	1	1	0.0274	TRUE	1	20	1	28	3	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MSH2--MSH6	1	2	MSH2	9609	chr2:47672796:+	MSH6	35885	chr2:48018066:+	ONLY_REF_SPLICE	NO	1	28	0.75	0.1	0.0137	0.0274	PROTCLUST,MSH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47630108-47789450:+,mutS_homolog_2,MSH6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47922669-48037240:+,mutS_homolog_6	LNCAPCLONEFGC_PROSTATE	0.1	0.75	0.0411	TRUE	0	0	0	1	0	TRUE	ACH-000977
LNCAPCLONEFGC_PROSTATE	AP003900.6--AC011718.2	1	1	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	5	12	0.29	0.14	0.0137	0.0137	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LNCAPCLONEFGC_PROSTATE	0.14	0.29	0.0274	TRUE	0	1	0	24	1	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	CERS4--C1orf85	1	1	CERS4	3624	chr19:8275746:+	C1orf85	24635	chr1:156260151:-	ONLY_REF_SPLICE	YES	246	42	0.01	0.05	0.0137	0.0137	CERS4->ceramide_synthase_4,chr19:8271620-8327305:+,C1orf85->chr1:156259880-156265463:-	LNCAPCLONEFGC_PROSTATE	0.01	0.05	0.0274	FALSE	0	0	0	1	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	EFNA5--FBXL17	1	1	EFNA5	1407	chr5:107006190:-	FBXL17	24161	chr5:107216880:-	ONLY_REF_SPLICE	YES	80	225	0.02	0.01	0.0137	0.0137	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Brain_-_Frontal_Cortex_(BA9)=1,Nerve_-_Tibial=1},{Klijn_CCL:Head-Neck=1,Lung=1},EFNA5->chr5:106712590-107006596:-,ephrin_A5,FBXL17->F-box_and_leucine-rich_repeat_protein_17,chr5:107194736-107717799:-	LNCAPCLONEFGC_PROSTATE	0.01	0.02	0.0274	FALSE	0	0	0	2	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	EFNA5--FBXL17	1	1	EFNA5	1407	chr5:107006190:-	FBXL17	20719	chr5:107559929:-	ONLY_REF_SPLICE	NO	80	110	0.02	0.02	0.0137	0.0137	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Brain_-_Frontal_Cortex_(BA9)=1,Nerve_-_Tibial=1},{Klijn_CCL:Head-Neck=1,Lung=1},EFNA5->chr5:106712590-107006596:-,ephrin_A5,FBXL17->F-box_and_leucine-rich_repeat_protein_17,chr5:107194736-107717799:-	LNCAPCLONEFGC_PROSTATE	0.02	0.02	0.0274	TRUE	0	0	0	1	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	GPR158--RP11-80K21.3	1	1	GPR158	3367	chr10:25510086:+	RP11-80K21.3	28208	chr10:25447298:+	ONLY_REF_SPLICE	YES	68	3	0.03	0.4	0.0137	0.0137	LOCAL_REARRANGEMENT:+:[13826],GPR158->G_protein-coupled_receptor_158,chr10:25463991-25891155:+,RP11-80K21.3->chr10:25401987-25450165:+	LNCAPCLONEFGC_PROSTATE	0.03	0.4	0.0274	TRUE	0	0	0	1	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	MBP--SET	1	1	MBP	10678	chr18:74778254:-	SET	40583	chr9:131453449:+	ONLY_REF_SPLICE	YES	44	362	0.04	0.01	0.0137	0.0137	GTEx&tcga_normals:1/3694=0.03%,MBP->chr18:74690783-74845639:-,myelin_basic_protein,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LNCAPCLONEFGC_PROSTATE	0.01	0.04	0.0274	FALSE	0	0	0	1	0	FALSE	ACH-000977
LNCAPCLONEFGC_PROSTATE	PIK3CD--TNFRSF8	1	1	PIK3CD	3314	chr1:9751629:+	TNFRSF8	26329	chr1:12169623:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0137	0.0137	PIK3CD->Oncogene{Bushman},chr1:9711790-9789172:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_delta,TNFRSF8->Oncogene{Bushman},chr1:12123434-12204264:+,tumor_necrosis_factor_receptor_superfamily_member_8	LNCAPCLONEFGC_PROSTATE	0.67	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000977
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	99	36	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8775	0.3191	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1966	TRUE	508	994	45	981	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	81	11	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	6	0	0.94	1	0.7179	0.0975	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.8154	TRUE	0	3	0	38	3	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	66	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	134	8	0.34	0.9	0.585	0.0266	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.9	0.6116	TRUE	519	3926	326	965	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	27	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2393	0.0355	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2748	FALSE	499	1288	110	792	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	26	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2304	0.0532	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2836	FALSE	462	80	0	856	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-ND2	24	4	IGH@	110149	chr14:106208265:-	MT-ND2	132209	chrM:4877:+	INCL_NON_REF_SPLICE	YES	9772	5621	0	0	0.2127	0.0355	IGH@->Oncogene{Bushman},MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.2482	FALSE	0	7	0	2	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	22	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	44	40	0.4	0.42	0.195	0.062	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.42	0.257	TRUE	267	562	48	632	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC069363.1--AC096579.7	21	6	AC069363.1	8551	chr17:34417372:+	AC096579.7	14555	chr2:89157022:-	INCL_NON_REF_SPLICE	YES	276	8521	0.09	0	0.1861	0.0532	AC069363.1->chr17:34400226-34417480:+,AC096579.7->chr2:89130700-89165653:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.2393	TRUE	0	0	0	3	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	13	16	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	15	0	0.66	1	0.1152	0.1418	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	1	0.257	TRUE	0	5	0	45	5	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	15	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1152	0.1329	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2481	FALSE	499	1288	110	792	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC069363.1--AC096579.7	14	8	AC069363.1	8564	chr17:34417385:+	AC096579.7	14568	chr2:89157009:-	INCL_NON_REF_SPLICE	YES	1	9216	0.96	0	0.1241	0.0709	AC069363.1->chr17:34400226-34417480:+,AC096579.7->chr2:89130700-89165653:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.96	0.195	TRUE	0	0	0	3	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0975	0.1329	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.2304	FALSE	499	1288	110	792	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	13	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1152	0.0443	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1595	FALSE	462	80	0	856	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAP7D3--TRIO	11	11	MAP7D3	7903	chrX:135318403:-	TRIO	30140	chr5:14270934:+	ONLY_REF_SPLICE	YES	24	1	0.48	0.96	0.0975	0.0975	MAP7D3->MAP7_domain_containing_3,chrX:135295381-135338641:-,TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.96	0.195	TRUE	0	0	0	1	0	TRUE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	10	8	AP003900.6	1122	chr21:11169841:+	AC011718.2	11864	chr22:20653813:-	ONLY_REF_SPLICE	YES	6	0	0.75	1	0.0886	0.0709	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.1595	TRUE	0	3	0	38	3	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	5	20	AP003900.6	3299	chr21:11174002:+	AC011718.2	10130	chr22:20656894:-	INCL_NON_REF_SPLICE	YES	15	0	0.62	1	0.0443	0.1773	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.2216	TRUE	0	0	0	3	0	TRUE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0798	0.0089	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0887	FALSE	462	80	0	856	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	7	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	40	40	0.26	0.26	0.062	0.062	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.26	0.124	TRUE	267	562	48	632	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.062	0.0532	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1152	FALSE	499	1288	110	792	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	4	11	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	13	0	0.54	1	0.0355	0.0975	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	1	0.133	TRUE	0	0	0	21	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC069363.1--AC096579.7	5	6	AC069363.1	8545	chr17:34417366:+	AC096579.7	14549	chr2:89157028:-	INCL_NON_REF_SPLICE	YES	349	8646	0.03	0	0.0443	0.0532	AC069363.1->chr17:34400226-34417480:+,AC096579.7->chr2:89130700-89165653:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0975	FALSE	0	0	0	3	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	5	5	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0443	0.0443	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.0886	FALSE	20	187	4	79	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	6	1	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	2	7	0.78	0.5	0.0532	0.0089	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.78	0.0621	TRUE	37	101	7	40	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	6	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0532	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0532	FALSE	0	24	0	62	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	5	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0443	0.0266	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.0709	FALSE	515	4851	409	746	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-ND2	4	5	IGH@	119213	chr14:106109834:-	MT-ND2	132561	chrM:5229:+	INCL_NON_REF_SPLICE	NO	4750	3820	0	0	0.0355	0.0443	IGH@->Oncogene{Bushman},MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0798	FALSE	0	7	0	1	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0443	FALSE	0	0	0	189	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-ND2	3	7	IGH@	119052	chr14:106109995:-	MT-ND2	132209	chrM:4877:+	INCL_NON_REF_SPLICE	YES	4534	5621	0	0	0.0266	0.062	IGH@->Oncogene{Bushman},MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0886	FALSE	0	7	0	1	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC069363.1--AC096579.7	3	5	AC069363.1	8612	chr17:34417433:+	AC096579.7	14616	chr2:89156961:-	INCL_NON_REF_SPLICE	YES	0	10209	1	0	0.0266	0.0443	AC069363.1->chr17:34400226-34417480:+,AC096579.7->chr2:89130700-89165653:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0709	FALSE	0	0	0	3	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD74--IGH@	4	1	CD74	7246	chr5:149781774:-	IGH@	119968	chr14:106208266:-	INCL_NON_REF_SPLICE	YES	6787	9770	0	0	0.0355	0.0089	CD74->CD74_molecule,Oncogene{Bushman},chr5:149781200-149792492:-,IGH@->Oncogene{Bushman}	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0444	FALSE	0	0	0	2	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-ND2	4	1	IGH@	110310	chr14:106208104:-	MT-ND2	132561	chrM:5229:+	INCL_NON_REF_SPLICE	NO	10836	3820	0	0	0.0355	0.0089	IGH@->Oncogene{Bushman},MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0444	FALSE	0	7	0	2	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	3	4	AC104820.2	16783	chr2:182227645:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	1	200	0.88	0.03	0.0266	0.0355	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.88	0.0621	FALSE	0	0	0	16	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR4--KCNJ6	4	0	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0355	FALSE	0	24	0	27	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0355	FALSE	499	1288	110	792	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--TAF12	4	0	RCC1	2175	chr1:28834672:+	TAF12	21394	chr1:28948677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0	LOCAL_INVERSION:+:-:[50023],RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0355	TRUE	0	1	0	2	0	TRUE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--ACTG1	3	3	IGH@	110446	chr14:106207968:-	ACTG1	135399	chr17:79478603:-	INCL_NON_REF_SPLICE	YES	3858	6052	0	0	0.0266	0.0266	IGH@->Oncogene{Bushman},ACTG1->actin_gamma_1,chr17:79476997-79490873:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0532	FALSE	0	0	0	1	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--ACTG1	3	3	IGH@	122091	chr14:106090971:-	ACTG1	135399	chr17:79478603:-	INCL_NON_REF_SPLICE	YES	4309	6052	0	0	0.0266	0.0266	IGH@->Oncogene{Bushman},ACTG1->actin_gamma_1,chr17:79476997-79490873:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0532	FALSE	0	0	0	1	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	3	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0266	0.0177	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0443	FALSE	33	240	4	98	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-565E6.1--HYDIN	3	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0.0177	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0443	TRUE	456	1387	91	133	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC011752.1--AC067959.1	3	0	AC011752.1	3400	chr2:21619046:+	AC067959.1	12999	chr2:21750379:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	GTEx_FI:{Blood_Vessel=[count:3=pct:0.8]},AC011752.1->chr2:21540532-21784185:+,AC067959.1->chr2:21444047-22193831:+	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0266	TRUE	1	5	0	1	2	TRUE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0266	FALSE	499	1288	110	792	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0.0266	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0443	FALSE	407	2205	196	549	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	1	5	CTD-2008L17.1	3828	chr18:53685010:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0089	0.0443	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0532	FALSE	1	24	0	14	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--UBE2D2	2	1	DANCR	1530	chr4:53579126:+	UBE2D2	10718	chr5:138979957:+	ONLY_REF_SPLICE	NO	334	83	0.01	0.03	0.0177	0.0089	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0266	FALSE	0	5	0	2	2	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNPY2--UBE2D2	2	0	CNPY2	2486	chr12:56708635:-	UBE2D2	13316	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	GTEx&tcga_normals:1/3694=0.03%,CNPY2->canopy_FGF_signaling_regulator_2,chr12:56703626-56710120:-,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0177	TRUE	0	4	0	1	0	TRUE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSN1--SOGA1	2	0	DSN1	3026	chr20:35399276:-	SOGA1	33047	chr20:35423002:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	LOCAL_REARRANGEMENT:-:[3624],DSN1->DSN1_homolog,_MIS12_kinetochore_complex_component,chr20:35380194-35402221:-,SOGA1->chr20:35405845-35492089:-,suppressor_of_glucose,_autophagy_associated_1	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0177	TRUE	0	0	0	2	0	TRUE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--TAF12	2	0	RCC1	2175	chr1:28834672:+	TAF12	20309	chr1:28950542:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	LOCAL_INVERSION:+:-:[50023],RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNIP--GOLGA3	2	0	TXNIP	1584	chr1:145439052:+	GOLGA3	10421	chr12:133398897:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein,GOLGA3->chr12:133345495-133405444:-,golgin_A3	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	1	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	2	197	0.5	0.01	0.0089	0.0089	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.5	0.0178	FALSE	0	1	0	18	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARIH2--IGJ	1	1	ARIH2	7108	chr3:48965246:+	IGJ	31480	chr4:71532231:-	ONLY_REF_SPLICE	YES	149	300	0.01	0.01	0.0089	0.0089	ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+,IGJ->chr4:71521258-71547534:-	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK7--SKIV2L2	1	1	CDK7	1613	chr5:68531280:+	SKIV2L2	20931	chr5:54623544:+	ONLY_REF_SPLICE	YES	57	118	0.03	0.02	0.0089	0.0089	CDK7->Oncogene{Bushman},chr5:68530668-68573250:+,cyclin-dependent_kinase_7,SKIV2L2->Ski2_like_RNA_helicase_2,chr5:54603588-54721409:+	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0178	TRUE	0	0	0	1	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MBTD1--SPAG9	1	1	MBTD1	2021	chr17:49336504:-	SPAG9	34668	chr17:49098726:-	ONLY_REF_SPLICE	NO	18	41	0.1	0.05	0.0089	0.0089	NEIGHBORS[56560],MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1,SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.1	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000426
KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-476K15.1--CTD-2015H3.2	1	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0089	0.0089	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0178	FALSE	0	46	0	73	0	FALSE	ACH-000426
TE14_OESOPHAGUS	TIMM23B--LINC00843	12	1	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2169	0.0181	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TE14_OESOPHAGUS	1	1	0.235	TRUE	508	994	45	981	0	FALSE	ACH-000726
TE14_OESOPHAGUS	TIMM23--RP11-464F9.1	8	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1446	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TE14_OESOPHAGUS	1	1	0.1446	TRUE	519	3926	326	965	0	FALSE	ACH-000726
TE14_OESOPHAGUS	HIATL2--GLI4	4	0	HIATL2	8701	chr9:99696077:-	GLI4	15002	chr8:144351530:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0723	0	HIATL2->chr9:99660348-99775862:-,GLI4->GLI_family_zinc_finger_4,Oncogene{Bushman},chr8:144349603-144359101:+	TE14_OESOPHAGUS	1	1	0.0723	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	RP11-123O10.4--GRIP1	4	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0723	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TE14_OESOPHAGUS	1	1	0.0723	FALSE	416	2512	207	587	0	FALSE	ACH-000726
TE14_OESOPHAGUS	DCTD--MTCH2	3	0	DCTD	4014	chr4:183836076:-	MTCH2	20986	chr11:47648679:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0542	0	DCTD->chr4:183811213-183839089:-,dCMP_deaminase,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	TE14_OESOPHAGUS	1	1	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	HSPBP1--GRK5	3	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	TE14_OESOPHAGUS	1	1	0.0542	TRUE	1	39	0	134	39	FALSE	ACH-000726
TE14_OESOPHAGUS	MCL1--DAB2IP	3	0	MCL1	3503	chr1:150549564:-	DAB2IP	34817	chr9:124546434:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	MCL1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:150547032-150552066:-,myeloid_cell_leukemia_1,DAB2IP->DAB2_interacting_protein,Oncogene{Bushman},chr9:124329336-124547809:+	TE14_OESOPHAGUS	1	1	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	MT-ND5--MT-ND4	3	0	MT-ND5	1193	chrM:12529:+	MT-ND4	5851	chrM:10798:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	TE14_OESOPHAGUS	1	1	0.0542	FALSE	12	15	0	18	0	FALSE	ACH-000726
TE14_OESOPHAGUS	PELI2--WASL	3	0	PELI2	3527	chr14:56645182:+	WASL	17394	chr7:123349277:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0542	0	PELI2->chr14:56584532-56768244:+,pellino_E3_ubiquitin_protein_ligase_family_member_2,WASL->Wiskott-Aldrich_syndrome_like,chr7:123321989-123389121:-	TE14_OESOPHAGUS	1	1	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	SLC25A21--CTAGE5	3	0	SLC25A21	1586	chr14:37641486:-	CTAGE5	43003	chr14:39815108:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0542	0	SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21,CTAGE5->CTAGE_family_member_5,chr14:39734488-39856156:+	TE14_OESOPHAGUS	1	1	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	XRRA1--ATF1	3	0	XRRA1	1273	chr11:74659973:-	ATF1	34059	chr12:51173923:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0542	0	XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-,ATF1->Oncogene{Bushman},activating_transcription_factor_1,chr12:51157493-51214905:+	TE14_OESOPHAGUS	1	1	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	ANO1--RP11-738G5.1	2	1	ANO1	7143	chr11:69951894:+	RP11-738G5.1	38062	chr8:50409534:-	ONLY_REF_SPLICE	NO	44	0	0.06	1	0.0362	0.0181	ANO1->anoctamin_1,chr11:69924408-70035634:+,RP11-738G5.1->chr8:50409322-50424739:-	TE14_OESOPHAGUS	0.06	1	0.0543	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	CERS6--STK39	2	1	CERS6	3994	chr2:169417832:+	STK39	29750	chr2:168986268:-	ONLY_REF_SPLICE	YES	5	4	0.38	0.43	0.0362	0.0181	GTEx_v2:{count=5;pct=0.06%;dist=Vagina=1,Cervix_-_Ectocervix=1,Adipose_-_Subcutaneous=1,Whole_Blood=1,Colon_-_Transverse=1},CERS6->ceramide_synthase_6,chr2:169312372-169631644:+,STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39	TE14_OESOPHAGUS	0.38	0.43	0.0543	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	AZIN1--HPS5	2	0	AZIN1	7535	chr8:103870241:-	HPS5	28436	chr11:18332998:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-,HPS5->HPS5,_biogenesis_of_lysosomal_organelles_complex_2_subunit_2,chr11:18300223-18343745:-	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	C17orf76-AS1--ATP6V1G2-DDX39B	2	0	C17orf76-AS1	1593	chr17:16342728:+	ATP6V1G2-DDX39B	21297	chr6:31503262:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	C17orf76-AS1->chr17:16342136-16381992:+,ATP6V1G2-DDX39B->ATP6V1G2-DDX39B_readthrough_(NMD_candidate),chr6:31497996-31514385:-	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	1	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	C17orf76-AS1--MIR205HG	2	0	C17orf76-AS1	1593	chr17:16342728:+	MIR205HG	13564	chr1:209602526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	C17orf76-AS1->chr17:16342136-16381992:+,MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	CNOT1--PTTG1	2	0	CNOT1	1159	chr16:58663632:-	PTTG1	52068	chr5:159849309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,PTTG1->Oncogene{Bushman},chr5:159848829-159855748:+,pituitary_tumor-transforming_1	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	DCUN1D1--RBM39	2	0	DCUN1D1	4385	chr3:182683467:-	RBM39	19522	chr20:34330035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	DCUN1D1->chr3:182655862-182703741:-,defective_in_cullin_neddylation_1_domain_containing_1,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	DNAJC17--DUOX1	2	0	DNAJC17	3454	chr15:41071421:-	DUOX1	33073	chr15:45445578:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	DNAJC17->DnaJ_heat_shock_protein_family_(Hsp40)_member_C17,chr15:41060067-41099675:-,DUOX1->chr15:45422131-45457774:+,dual_oxidase_1	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	DTL--POLR3F	2	0	DTL	1366	chr1:212209284:+	POLR3F	30612	chr20:18464125:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,POLR3F->chr20:18447771-18465287:+,polymerase_(RNA)_III_subunit_F	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	DUSP16--LOH12CR1	2	0	DUSP16	1267	chr12:12715051:-	LOH12CR1	19589	chr12:12588562:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[8989],DUSP16->chr12:12628829-12715317:-,dual_specificity_phosphatase_16,LOH12CR1->chr12:12510013-12619840:+	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	1	0	1	1	TRUE	ACH-000726
TE14_OESOPHAGUS	GOT2--FDFT1	2	0	GOT2	1218	chr16:58768044:-	FDFT1	26174	chr8:11695897:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	GOT2->chr16:58741035-58768261:-,glutamic-oxaloacetic_transaminase_2,FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	HINFP--BRD8	2	0	HINFP	10513	chr11:119003929:+	BRD8	29865	chr5:137497835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	HINFP->chr11:118992297-119006752:+,histone_H4_transcription_factor,BRD8->bromodomain_containing_8,chr5:137475455-137514675:-	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	MINK1--SREBF1	2	0	MINK1	3435	chr17:4781677:+	SREBF1	24282	chr17:17723835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	MINK1->chr17:4736683-4801356:+,misshapen_like_kinase_1,SREBF1->chr17:17713713-17740325:-,sterol_regulatory_element_binding_transcription_factor_1	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	MIR4435-1HG--NMNAT3	2	0	MIR4435-1HG	14499	chr2:112101638:-	NMNAT3	41973	chr3:139292522:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	MIR4435-1HG->chr2:111953927-112252677:-,NMNAT3->chr3:139279022-139396859:-,nicotinamide_nucleotide_adenylyltransferase_3	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	MYO5C--TRPM7	2	0	MYO5C	9357	chr15:52561950:-	TRPM7	91146	chr15:50854005:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	MYO5C->chr15:52484519-52587995:-,myosin_VC,TRPM7->chr15:50844670-50979012:-,transient_receptor_potential_cation_channel_subfamily_M_member_7	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	NBN--EIF3H	2	0	NBN	2566	chr8:90996753:-	EIF3H	31148	chr8:117738411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	NBN->Oncogene{Bushman},chr8:90945564-91015456:-,nibrin,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	NUCKS1--MIR205HG	2	0	NUCKS1	2370	chr1:205698700:-	MIR205HG	16682	chr1:209602526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	NUCKS1->chr1:205681947-205719404:-,nuclear_casein_kinase_and_cyclin-dependent_kinase_substrate_1,MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	PTRH2--CANX	2	0	PTRH2	1256	chr17:57784732:-	CANX	17767	chr5:179132680:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2,CANX->calnexin,chr5:179105629-179157926:+	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	RBM23--ODF2L	2	0	RBM23	6943	chr14:23378692:-	ODF2L	35709	chr1:86820542:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	RBM23->RNA_binding_motif_protein_23,chr14:23369854-23388393:-,ODF2L->chr1:86814344-86862023:-,outer_dense_fiber_of_sperm_tails_2_like	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	RCC1--SP1	2	0	RCC1	2175	chr1:28834672:+	SP1	20361	chr12:53775443:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	RP11-78F17.1--DSCR3	2	0	RP11-78F17.1	1307	chr18:976896:+	DSCR3	16383	chr21:38612940:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	RP11-78F17.1->chr18:976590-1174824:+,DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	SKP1--CNIH4	2	0	SKP1	1184	chr5:133512546:-	CNIH4	26549	chr1:224553581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-,CNIH4->chr1:224544552-224567161:+,cornichon_family_AMPA_receptor_auxiliary_protein_4	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	SNX9--SERAC1	2	0	SNX9	4471	chr6:158296208:+	SERAC1	29658	chr6:158579396:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	SNX9->chr6:158244296-158366109:+,sorting_nexin_9,SERAC1->chr6:158530536-158589312:-,serine_active_site_containing_1	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	SUCLA2--KCTD18	2	0	SUCLA2	1384	chr13:48611742:-	KCTD18	24152	chr2:201371814:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	SUCLA2->chr13:48510622-48612125:-,succinate-CoA_ligase_ADP-forming_beta_subunit,KCTD18->chr2:201353675-201384507:-,potassium_channel_tetramerization_domain_containing_18	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	TDRP--SOCS6	2	0	TDRP	2132	chr8:494650:-	SOCS6	13918	chr18:67991779:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	TDRP->chr8:439803-495781:-,testis_development_related_protein,SOCS6->chr18:67956137-67997436:+,suppressor_of_cytokine_signaling_6	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	VPS51--MPHOSPH8	2	0	VPS51	4226	chr11:64864599:+	MPHOSPH8	28204	chr13:20245346:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	VPS51->VPS51,_GARP_complex_subunit,chr11:64856796-64879332:+,MPHOSPH8->M-phase_phosphoprotein_8,chr13:20207788-20247599:+	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	ZNF141--SEPT7P2	2	0	ZNF141	1173	chr4:331775:+	SEPT7P2	27791	chr7:45767912:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	ZNF141->chr4:331603-378653:+,zinc_finger_protein_141,SEPT7P2->chr7:45763379-45808617:-,septin_7_pseudogene_2	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
TE14_OESOPHAGUS	ZNF490--EML2	2	0	ZNF490	5656	chr19:12721378:-	EML2	28616	chr19:46133304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	ZNF490->chr19:12688775-12750912:-,zinc_finger_protein_490,EML2->chr19:46110252-46148887:-,echinoderm_microtubule_associated_protein_like_2	TE14_OESOPHAGUS	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000726
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	164	56	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	88	19	0.71	0.92	1.5647	0.5343	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.92	2.099	TRUE	0	2	1	16	2	TRUE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	127	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.2117	0.2481	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.4598	TRUE	508	994	45	981	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	95	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9064	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9064	TRUE	0	0	0	518	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL22--RP1-120G22.11	76	2	RPL22	1709	chr1:6268741:-	RP1-120G22.11	15539	chr1:6265473:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.7251	0.0191	NEIGHBORS_OVERLAP:-:-:[940],RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22,RP1-120G22.11->chr1:6264900-6265840:-	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7442	FALSE	0	0	0	1	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	67	11	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	7	86	0.92	0.48	0.6392	0.1049	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.92	0.7441	TRUE	0	2	0	9	2	TRUE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	68	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	74	7	0.48	0.91	0.6488	0.0095	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.91	0.6583	TRUE	519	3926	326	965	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL22--RP1-120G22.11	10	173	RPL22	7028	chr1:6257712:-	RP1-120G22.11	15539	chr1:6265473:-	ONLY_REF_SPLICE	YES	1771	0	0.09	1	0.0954	1.6506	NEIGHBORS_OVERLAP:-:-:[940],RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22,RP1-120G22.11->chr1:6264900-6265840:-	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	1.746	FALSE	0	0	0	1	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OR51S1--TP53I11	29	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2767	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2767	TRUE	402	216	10	229	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	19	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1813	0.0191	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2004	FALSE	499	1288	110	792	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	19	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1813	0.0095	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1908	FALSE	462	80	0	856	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	12	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1145	0.0095	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.124	FALSE	416	2512	207	587	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	12	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1145	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1145	TRUE	0	0	0	100	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1049	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1049	TRUE	0	0	0	434	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0859	0.0668	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.1527	FALSE	499	1288	110	792	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	9	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	79	0	0.13	1	0.0859	0.0286	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.1145	FALSE	164	806	69	479	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0859	0.0191	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.105	FALSE	499	1288	110	792	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	8	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	25	0	0.26	1	0.0763	0.0095	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.0858	FALSE	272	151	14	158	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.8	7	4	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	36	7	0.23	0.61	0.0668	0.0382	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.61	0.105	TRUE	6	2	0	8	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-TG	3	13	MT-ND3	1064	chrM:10122:+	MT-TG	4305	chrM:9949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0.124	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1526	FALSE	97	9	0	14	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0382	0.0859	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1241	FALSE	499	1288	110	792	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.8	5	5	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	40	7	0.2	0.59	0.0477	0.0477	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.59	0.0954	TRUE	6	2	0	8	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-TG	6	0	MT-ND3	1026	chrM:10084:+	MT-TG	4396	chrM:10040:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0572	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0572	FALSE	97	9	0	14	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PFKL--MT-ND4L	6	0	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0572	0	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0572	FALSE	0	0	0	33	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	7	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0382	0.0668	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.105	FALSE	499	1288	110	792	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	5	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	45	0	0.13	1	0.0477	0.0191	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.0668	FALSE	125	705	46	456	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	15	16	0.38	0.36	0.0382	0.0477	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.38	0.0859	TRUE	267	562	48	632	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	1	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0.0095	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0572	FALSE	462	80	0	856	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	5	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	2	0.67	0.75	0.0477	0.0095	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.75	0.0572	FALSE	16	356	14	466	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12568	chr4:174253271:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0477	TRUE	0	0	0	518	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	4	2	ABL1	1510	chr9:133589842:+	BCR	43197	chr22:23637211:+	ONLY_REF_SPLICE	YES	7	95	0.46	0.06	0.0382	0.0191	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.46	0.0573	TRUE	0	0	0	6	0	TRUE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	4	1	CCDC26	6922	chr8:130365050:-	LINC00977	13259	chr8:130229652:-	INCL_NON_REF_SPLICE	YES	44	5	0.1	0.5	0.0382	0.0095	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.5	0.0477	TRUE	0	0	0	6	0	TRUE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UHRF1--KDM4B	4	1	UHRF1	4175	chr19:4911050:+	KDM4B	50711	chr19:5150369:+	ONLY_REF_SPLICE	YES	868	33	0.01	0.13	0.0382	0.0095	NEIGHBORS[6960],UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1,KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.13	0.0477	FALSE	0	0	0	1	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	4	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	24436	chr10:114650725:+	ONLY_REF_SPLICE	YES	25	0	0.17	1	0.0382	0.0095	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.0477	FALSE	21	3	0	16	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	1	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0.0095	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0381	FALSE	462	80	0	856	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	1	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	5	2	0.44	0.67	0.0286	0.0095	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.67	0.0381	FALSE	0	9	0	55	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	3	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0.0095	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0381	TRUE	62	24	1	171	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	0	CCDC26	4666	chr8:130411760:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0286	TRUE	0	0	0	4	0	TRUE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	0	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0286	TRUE	0	2	0	11	2	TRUE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-TG	3	0	MT-ND3	1063	chrM:10121:+	MT-TG	4390	chrM:10034:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0286	FALSE	97	9	0	14	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0286	FALSE	292	1546	117	613	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTB-57H20.1--NR3C1	2	0	CTB-57H20.1	1104	chr5:142985296:+	NR3C1	17137	chr5:142780417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	CTB-57H20.1->chr5:142985193-143208337:+,NR3C1->chr5:142657496-142815077:-,nuclear_receptor_subfamily_3_group_C_member_1	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VRK1--FAF1	2	0	VRK1	11520	chr14:97327072:+	FAF1	21405	chr1:51323669:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	VRK1->Oncogene{Bushman},chr14:97263641-97398059:+,vaccinia_related_kinase_1,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	1	CCDC26	4666	chr8:130411760:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	24	0	0.08	1	0.0095	0.0095	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.019	TRUE	0	0	0	4	0	TRUE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FUBP1--IVNS1ABP	1	1	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	181	174	0.01	0.01	0.0095	0.0095	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.019	FALSE	1	4	0	16	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED16--CNN2	1	1	MED16	9051	chr19:879937:-	CNN2	24620	chr19:1036129:+	ONLY_REF_SPLICE	YES	66	170	0.03	0.01	0.0095	0.0095	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood=[count:2=pct:1.1],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Whole_Blood=3,Liver=1,Esophagus_-_Mucosa=1,Spleen=1},MED16->chr19:867962-893218:-,mediator_complex_subunit_16,CNN2->calponin_2,chr19:1026298-1039068:+	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.019	FALSE	4	0	1	5	0	FALSE	ACH-000462
NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAF3IP2-AS1--TRAF3IP2	1	1	TRAF3IP2-AS1	1155	chr6:111804868:+	TRAF3IP2	20789	chr6:111901592:-	ONLY_REF_SPLICE	NO	28	130	0.07	0.02	0.0095	0.0095	NEIGHBORS_OVERLAP:+:-:[41848],TRAF3IP2-AS1->TRAF3IP2_antisense_RNA_1,chr6:111804714-111919505:+,TRAF3IP2->TRAF3_interacting_protein_2,chr6:111877657-111927481:-	NALM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.07	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000462
HCC4006_LUNG	CD44--CAT	1450	695	CD44	1501	chr11:35160917:+	CAT	41736	chr11:34489835:+	ONLY_REF_SPLICE	YES	6282	836	0.25	0.72	16.1367	7.7345	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,CAT->catalase,chr11:34460472-34493609:+	HCC4006_LUNG	0.25	0.72	23.8712	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	C6orf132--RPL31P33	170	52	C6orf132	2427	chr6:42096410:-	RPL31P33	15438	chr6:53233469:+	INCL_NON_REF_SPLICE	YES	35	0	0.86	1	1.8919	0.5787	C6orf132->chr6:42068856-42110357:-,chromosome_6_open_reading_frame_132,RPL31P33->chr6:53233468-53233807:+,ribosomal_protein_L31_pseudogene_33	HCC4006_LUNG	0.86	1	2.4706	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	ZNF230--PRPF31	131	54	ZNF230	1160	chr19:44507259:+	PRPF31	13564	chr19:54619064:+	INCL_NON_REF_SPLICE	YES	2	1	0.99	0.99	1.4579	0.601	ZNF230->chr19:44507100-44518078:+,zinc_finger_protein_230,PRPF31->chr19:54618837-54635140:+,pre-mRNA_processing_factor_31	HCC4006_LUNG	0.99	0.99	2.0589	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MCU--RP11-464F9.21	80	45	MCU	1171	chr10:74452059:+	RP11-464F9.21	25029	chr10:75434331:+	ONLY_REF_SPLICE	YES	216	16	0.37	0.89	0.8903	0.5008	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-464F9.21->chr10:75413797-75434477:+	HCC4006_LUNG	0.37	0.89	1.3911	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MCU--RP11-464F9.21	74	55	MCU	5898	chr10:74475660:+	RP11-464F9.21	25029	chr10:75434331:+	ONLY_REF_SPLICE	YES	241	16	0.35	0.89	0.8235	0.6121	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-464F9.21->chr10:75413797-75434477:+	HCC4006_LUNG	0.35	0.89	1.4356	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	CD44--CAT	1	291	CD44	1501	chr11:35160917:+	CAT	43224	chr11:34492505:+	ONLY_REF_SPLICE	YES	6282	965	0.04	0.23	0.0111	3.2385	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,CAT->catalase,chr11:34460472-34493609:+	HCC4006_LUNG	0.04	0.23	3.2496	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	TIMM23B--LINC00843	45	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.97	0.5008	0.1558	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC4006_LUNG	0.97	1	0.6566	TRUE	508	994	45	981	0	FALSE	ACH-000066
HCC4006_LUNG	MCU--RP11-464F9.21	16	73	MCU	5898	chr10:74475660:+	RP11-464F9.21	23393	chr10:75427484:+	ONLY_REF_SPLICE	YES	241	0	0.27	1	0.1781	0.8124	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-464F9.21->chr10:75413797-75434477:+	HCC4006_LUNG	0.27	1	0.9905	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	SLIT3--CTD-2162K18.5	29	12	SLIT3	10881	chr5:168244305:-	CTD-2162K18.5	55017	chr19:37292105:+	ONLY_REF_SPLICE	YES	39	13	0.51	0.76	0.3227	0.1335	SLIT3->chr5:168088745-168728133:-,slit_guidance_ligand_3,CTD-2162K18.5->chr19:37288420-37319017:+	HCC4006_LUNG	0.51	0.76	0.4562	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	TIMM23--RP11-464F9.1	31	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.345	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC4006_LUNG	1	1	0.345	TRUE	519	3926	326	965	0	FALSE	ACH-000066
HCC4006_LUNG	MCU--RP11-464F9.21	14	58	MCU	1171	chr10:74452059:+	RP11-464F9.21	23393	chr10:75427484:+	ONLY_REF_SPLICE	YES	216	0	0.25	1	0.1558	0.6455	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-464F9.21->chr10:75413797-75434477:+	HCC4006_LUNG	0.25	1	0.8013	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MT-TA--MT-TC	28	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3116	0.0223	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC4006_LUNG	1	1	0.3339	FALSE	462	80	0	856	0	FALSE	ACH-000066
HCC4006_LUNG	RP11-123O10.4--GRIP1	26	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2893	0.089	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC4006_LUNG	1	1	0.3783	FALSE	416	2512	207	587	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ND6--MT-TE	27	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3005	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC4006_LUNG	1	1	0.3005	FALSE	499	1288	110	792	0	FALSE	ACH-000066
HCC4006_LUNG	KDM4B--FST	22	2	KDM4B	17776	chr19:5119863:+	FST	37400	chr5:52778710:+	ONLY_REF_SPLICE	YES	12	2	0.67	0.92	0.2448	0.0223	{Klijn_CCL:Lung=1},KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,FST->Oncogene{Bushman},chr5:52776239-52782964:+,follistatin	HCC4006_LUNG	0.67	0.92	0.2671	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	EPB41L4A--ZNF790	22	0	EPB41L4A	1376	chr5:111754638:-	ZNF790	43167	chr19:37316594:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2448	0	EPB41L4A->chr5:111478138-111755013:-,erythrocyte_membrane_protein_band_4.1_like_4A,ZNF790->chr19:37308330-37341689:-,zinc_finger_protein_790	HCC4006_LUNG	1	1	0.2448	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	HSP90AB1--MT-RNR2	21	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3155	0	0.01	1	0.2337	0.0223	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC4006_LUNG	0.01	1	0.256	FALSE	13	9	0	364	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ND4--MT-ATP8	21	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2337	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC4006_LUNG	1	1	0.2337	FALSE	230	193	14	283	0	FALSE	ACH-000066
HCC4006_LUNG	ARAF--FOXR2	18	6	ARAF	2556	chrX:47422728:+	FOXR2	14390	chrX:55650839:+	INCL_NON_REF_SPLICE	YES	116	47	0.17	0.34	0.2003	0.0668	ARAF->A-Raf_proto-oncogene,_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:47420516-47431307:+,FOXR2->chrX:55649833-55652621:+,forkhead_box_R2	HCC4006_LUNG	0.17	0.34	0.2671	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MCU--RP11-464F9.21	5	55	MCU	6985	chr10:74496329:+	RP11-464F9.21	25029	chr10:75434331:+	ONLY_REF_SPLICE	YES	244	16	0.2	0.79	0.0556	0.6121	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-464F9.21->chr10:75413797-75434477:+	HCC4006_LUNG	0.2	0.79	0.6677	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1892	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HCC4006_LUNG	1	1	0.1892	TRUE	0	0	0	518	0	FALSE	ACH-000066
HCC4006_LUNG	MCU--RP11-464F9.21	1	60	MCU	5898	chr10:74475660:+	RP11-464F9.21	23942	chr10:75428033:+	ONLY_REF_SPLICE	YES	241	12	0.2	0.84	0.0111	0.6677	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-464F9.21->chr10:75413797-75434477:+	HCC4006_LUNG	0.2	0.84	0.6788	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	PLK2--SEC24C	15	4	PLK2	4080	chr5:57753008:-	SEC24C	12731	chr10:75510866:+	ONLY_REF_SPLICE	YES	142	215	0.12	0.08	0.1669	0.0445	PLK2->chr5:57749809-57756087:-,polo_like_kinase_2,SEC24C->SEC24_homolog_C,_COPII_coat_complex_component,chr10:75504120-75531919:+	HCC4006_LUNG	0.08	0.12	0.2114	TRUE	0	0	0	1	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ND4--MT-ATP8	15	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1669	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC4006_LUNG	1	1	0.1669	FALSE	230	193	14	283	0	FALSE	ACH-000066
HCC4006_LUNG	EPN1--CTD-2117L12.1	13	4	EPN1	8866	chr19:56201316:+	CTD-2117L12.1	18736	chr5:57843198:-	ONLY_REF_SPLICE	YES	229	0	0.07	1	0.1447	0.0445	EPN1->chr19:56186592-56221224:+,epsin_1,CTD-2117L12.1->chr5:57837394-57854070:-	HCC4006_LUNG	0.07	1	0.1892	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MCU--RP11-464F9.21	2	48	MCU	1171	chr10:74452059:+	RP11-464F9.21	23942	chr10:75428033:+	ONLY_REF_SPLICE	YES	216	12	0.19	0.81	0.0223	0.5342	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-464F9.21->chr10:75413797-75434477:+	HCC4006_LUNG	0.19	0.81	0.5565	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MT-ND6--MT-TE	14	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1558	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC4006_LUNG	1	1	0.1558	FALSE	499	1288	110	792	0	FALSE	ACH-000066
HCC4006_LUNG	MCU--RP11-464F9.21	2	45	MCU	3010	chr10:74468114:+	RP11-464F9.21	25029	chr10:75434331:+	ONLY_REF_SPLICE	YES	260	16	0.15	0.75	0.0223	0.5008	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-464F9.21->chr10:75413797-75434477:+	HCC4006_LUNG	0.15	0.75	0.5231	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MIPEPP3--ABHD12	13	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1447	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	HCC4006_LUNG	1	1	0.1447	TRUE	64	202	9	44	0	FALSE	ACH-000066
HCC4006_LUNG	HSP90AB1--MT-RNR2	12	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3163	0	0	1	0.1335	0.0223	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC4006_LUNG	0	1	0.1558	FALSE	13	9	0	364	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ND4--MT-ATP8	11	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1224	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC4006_LUNG	1	1	0.1224	FALSE	230	198	14	283	0	FALSE	ACH-000066
HCC4006_LUNG	RP4-565E6.1--HYDIN	8	9	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.089	0.1002	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HCC4006_LUNG	1	1	0.1892	TRUE	456	1387	91	133	0	FALSE	ACH-000066
HCC4006_LUNG	MDGA2--EGLN3-AS1	9	4	MDGA2	1438	chr14:48143720:-	EGLN3-AS1	35576	chr14:34510411:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.1002	0.0445	MDGA2->MAM_domain_containing_glycosylphosphatidylinositol_anchor_2,chr14:47308826-48144157:-,chr14:47311134-48143999:-,EGLN3-AS1->EGLN3_antisense_RNA_1,chr14:34509303-34528506:+	HCC4006_LUNG	0.93	1	0.1447	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MT-ND6--MT-TE	8	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.089	0.089	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC4006_LUNG	1	1	0.178	FALSE	499	1288	110	792	0	FALSE	ACH-000066
HCC4006_LUNG	RP11-96H19.1--RP11-446N19.1	9	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1002	0.0445	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC4006_LUNG	1	1	0.1447	FALSE	515	4851	409	746	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ATP6--MT-CO1	9	0	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1002	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC4006_LUNG	1	1	0.1002	FALSE	183	104	9	328	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ND4--MT-ATP8	8	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10132	10	0	0.55	0.089	0.0445	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC4006_LUNG	0	0.55	0.1335	FALSE	231	217	16	283	0	FALSE	ACH-000066
HCC4006_LUNG	RP11-680G10.1--GSE1	9	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1002	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC4006_LUNG	1	1	0.1002	TRUE	465	1949	224	605	0	FALSE	ACH-000066
HCC4006_LUNG	EPN1--CTD-2117L12.1	6	2	EPN1	8866	chr19:56201316:+	CTD-2117L12.1	21016	chr5:57838214:-	ONLY_REF_SPLICE	YES	229	0	0.03	1	0.0668	0.0223	EPN1->chr19:56186592-56221224:+,epsin_1,CTD-2117L12.1->chr5:57837394-57854070:-	HCC4006_LUNG	0.03	1	0.0891	TRUE	0	0	0	1	0	FALSE	ACH-000066
HCC4006_LUNG	MT-TA--MT-TC	6	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0668	0.0223	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC4006_LUNG	1	1	0.0891	FALSE	462	80	0	856	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ND4--MT-ATP8	6	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0668	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC4006_LUNG	1	1	0.0668	FALSE	230	193	14	283	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ND6--MT-TE	4	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0445	0.089	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC4006_LUNG	0.92	1	0.1335	FALSE	499	1288	110	792	0	FALSE	ACH-000066
HCC4006_LUNG	NRIP1--AF127936.7	5	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.39	1	0.0556	0.0445	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC4006_LUNG	0.39	1	0.1001	FALSE	292	1546	117	613	0	FALSE	ACH-000066
HCC4006_LUNG	NRIP1--AF127936.7	4	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	52	0	0.19	1	0.0445	0.089	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC4006_LUNG	0.19	1	0.1335	FALSE	164	806	69	479	0	FALSE	ACH-000066
HCC4006_LUNG	IFI27--MT-ND4L	5	1	IFI27	8929	chr14:94582869:+	MT-ND4L	12095	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1036	0	0.01	1	0.0556	0.0111	IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC4006_LUNG	0.01	1	0.0667	FALSE	0	0	0	13	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ND4--MT-ATP8	5	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10050	10	0	0.38	0.0556	0.0111	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC4006_LUNG	0	0.38	0.0667	FALSE	231	205	14	283	0	FALSE	ACH-000066
HCC4006_LUNG	XXbac-BPG252P9.9--IFI27	5	1	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	1938	1	0	0.86	0.0556	0.0111	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	HCC4006_LUNG	0	0.86	0.0667	FALSE	0	2	0	13	2	FALSE	ACH-000066
HCC4006_LUNG	CD44--PDHX	4	4	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	8455	769	0	0.01	0.0445	0.0445	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HCC4006_LUNG	0	0.01	0.089	FALSE	0	20	0	35	2	FALSE	ACH-000066
HCC4006_LUNG	CEP120--DCP2	4	4	CEP120	21710	chr5:122700190:-	DCP2	32886	chr5:112321532:+	ONLY_REF_SPLICE	YES	18	42	0.31	0.16	0.0445	0.0445	CEP120->centrosomal_protein_120,chr5:122680579-122759286:-,DCP2->chr5:112312399-112356667:+,decapping_mRNA_2	HCC4006_LUNG	0.16	0.31	0.089	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0556	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC4006_LUNG	1	1	0.0556	FALSE	230	198	14	283	0	FALSE	ACH-000066
HCC4006_LUNG	NRIP1--AF127936.7	3	7	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	35	0	0.22	1	0.0334	0.0779	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC4006_LUNG	0.22	1	0.1113	FALSE	125	705	46	456	0	FALSE	ACH-000066
HCC4006_LUNG	CPT1A--FOLR1	4	2	CPT1A	20902	chr11:68540733:-	FOLR1	35312	chr11:71906315:+	ONLY_REF_SPLICE	YES	106	157	0.05	0.04	0.0445	0.0223	CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-,FOLR1->chr11:71900602-71907345:+,folate_receptor_1_(adult)	HCC4006_LUNG	0.04	0.05	0.0668	TRUE	0	0	0	1	0	FALSE	ACH-000066
HCC4006_LUNG	ELL--FKBP8	4	2	ELL	1207	chr19:18632731:-	FKBP8	21177	chr19:18652805:-	ONLY_REF_SPLICE	YES	27	78	0.18	0.07	0.0445	0.0223	GTEx_FI:{Esophagus=[count:1=pct:0.2],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[9624],ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	HCC4006_LUNG	0.07	0.18	0.0668	TRUE	2	2	0	6	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ND4--MT-ATP8	4	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	11177	0	0	1	0.0445	0.0111	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC4006_LUNG	0	1	0.0556	FALSE	231	205	14	283	0	FALSE	ACH-000066
HCC4006_LUNG	OSMR--OR51E2	4	1	OSMR	1269	chr5:38846228:+	OR51E2	29653	chr11:4703991:-	ONLY_REF_SPLICE	YES	32	0	0.14	1	0.0445	0.0111	OSMR->chr5:38845960-38945698:+,oncostatin_M_receptor,OR51E2->chr11:4701401-4719084:-,olfactory_receptor_family_51_subfamily_E_member_2	HCC4006_LUNG	0.14	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5909	chrM:7131:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0445	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC4006_LUNG	1	1	0.0445	FALSE	183	104	9	328	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0445	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC4006_LUNG	1	1	0.0445	FALSE	231	204	14	283	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1201	chrM:10960:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0445	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC4006_LUNG	1	1	0.0445	FALSE	230	193	14	283	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1503	chrM:11262:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	11005	0	0	1	0.0334	0.0445	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC4006_LUNG	0	1	0.0779	FALSE	231	217	16	283	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0445	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC4006_LUNG	1	1	0.0445	FALSE	499	1288	110	792	0	FALSE	ACH-000066
HCC4006_LUNG	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0445	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC4006_LUNG	1	1	0.0445	FALSE	462	80	0	856	0	FALSE	ACH-000066
HCC4006_LUNG	PKM--PPIA	3	4	PKM	16753	chr15:72494877:-	PPIA	23268	chr7:44836286:+	INCL_NON_REF_SPLICE	YES	3923	0	0	1	0.0334	0.0445	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	HCC4006_LUNG	0	1	0.0779	FALSE	0	0	0	18	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	11174	0	0	1	0.0334	0.0223	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC4006_LUNG	0	1	0.0557	FALSE	231	205	14	283	0	FALSE	ACH-000066
HCC4006_LUNG	OSMR--OR51E2	3	2	OSMR	1530	chr5:38846489:+	OR51E2	29653	chr11:4703991:-	ONLY_REF_SPLICE	YES	195	0	0.03	1	0.0334	0.0223	OSMR->chr5:38845960-38945698:+,oncostatin_M_receptor,OR51E2->chr11:4701401-4719084:-,olfactory_receptor_family_51_subfamily_E_member_2	HCC4006_LUNG	0.03	1	0.0557	TRUE	0	0	0	1	0	FALSE	ACH-000066
HCC4006_LUNG	RP4-565E6.1--HYDIN	3	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.0334	0.0223	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HCC4006_LUNG	0.71	1	0.0557	TRUE	84	87	4	41	0	FALSE	ACH-000066
HCC4006_LUNG	C19orf25--DAZAP1	3	1	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	48	123	0.08	0.03	0.0334	0.0111	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	HCC4006_LUNG	0.03	0.08	0.0445	TRUE	6	7	1	24	0	FALSE	ACH-000066
HCC4006_LUNG	DEK--SFTA2	2	5	DEK	6348	chr6:18249882:-	SFTA2	16265	chr6:30899572:-	ONLY_REF_SPLICE	NO	696	124	0.01	0.05	0.0223	0.0556	DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-,SFTA2->chr6:30899130-30899952:-,surfactant_associated_2	HCC4006_LUNG	0.01	0.05	0.0779	FALSE	0	0	0	1	0	FALSE	ACH-000066
HCC4006_LUNG	CD44--MT-ND2	3	0	CD44	1371	chr11:35160787:+	MT-ND2	31487	chrM:5229:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC4006_LUNG	1	1	0.0334	FALSE	0	0	0	1	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1477	chrM:9003:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC4006_LUNG	1	1	0.0334	FALSE	183	104	9	328	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC4006_LUNG	1	1	0.0334	FALSE	183	104	9	328	0	FALSE	ACH-000066
HCC4006_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC4006_LUNG	1	1	0.0334	FALSE	230	193	14	283	0	FALSE	ACH-000066
HCC4006_LUNG	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0.0445	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC4006_LUNG	1	1	0.0668	FALSE	407	2205	196	549	0	FALSE	ACH-000066
HCC4006_LUNG	SLIT3--CTD-2162K18.5	2	3	SLIT3	10881	chr5:168244305:-	CTD-2162K18.5	59655	chr19:37318552:+	ONLY_REF_SPLICE	YES	39	11	0.11	0.31	0.0223	0.0334	SLIT3->chr5:168088745-168728133:-,slit_guidance_ligand_3,CTD-2162K18.5->chr19:37288420-37319017:+	HCC4006_LUNG	0.11	0.31	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	SLIT3--CTD-2162K18.5	2	3	SLIT3	10881	chr5:168244305:-	CTD-2162K18.5	58564	chr19:37314633:+	ONLY_REF_SPLICE	YES	39	11	0.11	0.31	0.0223	0.0334	SLIT3->chr5:168088745-168728133:-,slit_guidance_ligand_3,CTD-2162K18.5->chr19:37288420-37319017:+	HCC4006_LUNG	0.11	0.31	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	CD44--PDHX	2	1	CD44	1501	chr11:35160917:+	PDHX	33796	chr11:34969053:+	ONLY_REF_SPLICE	YES	6282	883	0	0	0.0223	0.0111	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HCC4006_LUNG	0	0	0.0334	FALSE	0	1	0	5	0	FALSE	ACH-000066
HCC4006_LUNG	CD44--PDHX	2	1	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	6282	769	0	0	0.0223	0.0111	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HCC4006_LUNG	0	0	0.0334	FALSE	0	7	0	19	1	FALSE	ACH-000066
HCC4006_LUNG	CTC-550B14.7--PSG1	2	1	CTC-550B14.7	1272	chr19:55517832:+	PSG1	11796	chr19:43382430:-	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0223	0.0111	CTC-550B14.7->chr19:55517561-55559454:+,PSG1->chr19:43370616-43383974:-,pregnancy_specific_beta-1-glycoprotein_1	HCC4006_LUNG	0.3	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	35	3	0.08	0.5	0.0223	0.0111	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC4006_LUNG	0.08	0.5	0.0334	FALSE	7	44	2	41	0	FALSE	ACH-000066
HCC4006_LUNG	RP11-435B5.4--GNAS	2	1	RP11-435B5.4	2843	chr1:143465380:-	GNAS	35434	chr20:57470667:+	ONLY_REF_SPLICE	YES	2	769	0.6	0	0.0223	0.0111	RP11-435B5.4->chr1:143354963-143467632:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HCC4006_LUNG	0	0.6	0.0334	FALSE	0	0	0	2	0	FALSE	ACH-000066
HCC4006_LUNG	CCDC130--ILF3	2	0	CCDC130	1526	chr19:13843099:+	ILF3	25491	chr19:10792669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	CCDC130->chr19:13842574-13874110:+,coiled-coil_domain_containing_130,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	HCC4006_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	CD44--PDHX	1	4	CD44	11333	chr11:35222742:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	8495	769	0	0.01	0.0111	0.0445	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HCC4006_LUNG	0	0.01	0.0556	FALSE	0	0	0	1	0	FALSE	ACH-000066
HCC4006_LUNG	OPN3--ASPH	2	0	OPN3	2592	chr1:241803184:-	ASPH	36028	chr8:62555992:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	OPN3->chr1:241753404-241840678:-,opsin_3,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	HCC4006_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	PSMD11--AC084809.3	2	0	PSMD11	10153	chr17:30801842:+	AC084809.3	20901	chr17:31233209:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	PSMD11->chr17:30771279-30810336:+,proteasome_26S_subunit,_non-ATPase_11,AC084809.3->chr17:31232680-31233602:+	HCC4006_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0111	0.0445	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC4006_LUNG	0.83	1	0.0556	FALSE	467	2173	244	435	0	FALSE	ACH-000066
HCC4006_LUNG	ELL--UPF1	1	2	ELL	1207	chr19:18632731:-	UPF1	21441	chr19:18956789:+	ONLY_REF_SPLICE	YES	27	0	0.1	1	0.0111	0.0223	ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,UPF1->UPF1,_RNA_helicase_and_ATPase,chr19:18942747-18979045:+	HCC4006_LUNG	0.1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	DEK--SFTA2	1	1	DEK	6348	chr6:18249882:-	SFTA2	16486	chr6:30899351:-	ONLY_REF_SPLICE	NO	696	102	0	0.02	0.0111	0.0111	DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-,SFTA2->chr6:30899130-30899952:-,surfactant_associated_2	HCC4006_LUNG	0	0.02	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000066
HCC4006_LUNG	EPN1--CTD-2117L12.1	1	1	EPN1	6785	chr19:56197011:+	CTD-2117L12.1	21016	chr5:57838214:-	ONLY_REF_SPLICE	YES	557	0	0	1	0.0111	0.0111	EPN1->chr19:56186592-56221224:+,epsin_1,CTD-2117L12.1->chr5:57837394-57854070:-	HCC4006_LUNG	0	1	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000066
HCC4006_LUNG	KDM4B--FST	1	1	KDM4B	13519	chr19:5110829:+	FST	37400	chr5:52778710:+	ONLY_REF_SPLICE	NO	17	2	0.11	0.5	0.0111	0.0111	{Klijn_CCL:Lung=1},KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,FST->Oncogene{Bushman},chr5:52776239-52782964:+,follistatin	HCC4006_LUNG	0.11	0.5	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	PDHX--CD44	1	1	PDHX	3068	chr11:34953031:+	CD44	20666	chr11:35198122:+	ONLY_REF_SPLICE	YES	938	6417	0	0	0.0111	0.0111	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	HCC4006_LUNG	0	0	0.0222	FALSE	0	0	0	5	0	FALSE	ACH-000066
HCC4006_LUNG	RP1-179N16.6--RP1-167F1.2	1	1	RP1-179N16.6	3260	chr6:36147394:-	RP1-167F1.2	10631	chr6:19640814:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0111	0.0111	RP1-179N16.6->chr6:36114475-36164982:-,RP1-167F1.2->chr6:19535175-19839311:-	HCC4006_LUNG	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000066
HCC4006_LUNG	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	1	1	0.67	0.0111	0.0111	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC4006_LUNG	0.67	1	0.0222	TRUE	62	24	1	171	0	FALSE	ACH-000066
COLO320_LARGE_INTESTINE	PVT1--MYC	5326	4393	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	5342	954	0.65	0.91	50.6471	41.7749	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.65	0.91	92.422	TRUE	3	14	0	24	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	2473	4388	PVT1	1202	chr8:128806980:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	5342	935	0.56	0.88	23.5168	41.7273	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.56	0.88	65.2441	TRUE	3	14	0	24	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	270	4596	PVT1	2520	chr8:128808317:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	4323	935	0.53	0.84	2.5675	43.7053	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.53	0.84	46.2728	TRUE	0	6	0	6	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	279	4508	PVT1	2457	chr8:128808254:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	4825	954	0.5	0.83	2.6531	42.8684	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.5	0.83	45.5215	TRUE	0	6	0	6	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	141	4603	PVT1	2520	chr8:128808317:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	4323	954	0.52	0.83	1.3408	43.7718	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.52	0.83	45.1126	TRUE	0	6	0	6	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	158	4501	PVT1	2457	chr8:128808254:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	4825	935	0.49	0.83	1.5025	42.8019	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.49	0.83	44.3044	TRUE	0	6	0	6	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	3	4609	PVT1	13955	chr8:129001537:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	79	954	0.98	0.83	0.0285	43.8289	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.83	0.98	43.8574	TRUE	0	0	0	3	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	3	4608	PVT1	8346	chr8:128903244:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	2375	954	0.66	0.83	0.0285	43.8194	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.66	0.83	43.8479	TRUE	0	5	0	7	2	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	3	4602	PVT1	13955	chr8:129001537:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	79	935	0.98	0.83	0.0285	43.7623	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.83	0.98	43.7908	TRUE	0	0	0	3	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	2	4605	PVT1	3930	chr8:128815805:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	4265	954	0.52	0.83	0.019	43.7908	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.52	0.83	43.8098	TRUE	0	0	0	2	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	2	4601	PVT1	8346	chr8:128903244:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	2375	935	0.66	0.83	0.019	43.7528	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.66	0.83	43.7718	TRUE	0	5	0	7	2	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	1	4601	PVT1	10746	chr8:128951922:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	NO	1132	935	0.8	0.83	0.0095	43.7528	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.8	0.83	43.7623	TRUE	0	1	0	4	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	7	2971	PVT1	2457	chr8:128808254:+	MYC	30686	chr8:128750538:+	ONLY_REF_SPLICE	YES	4825	830	0.38	0.78	0.0666	28.2525	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.38	0.78	28.3191	TRUE	0	6	0	6	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	22	2900	PVT1	1202	chr8:128806980:+	MYC	30686	chr8:128750538:+	ONLY_REF_SPLICE	YES	5342	830	0.35	0.78	0.2092	27.5773	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.35	0.78	27.7865	TRUE	3	14	0	24	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PTMA--PTMS	413	7	PTMA	6054	chr2:232576687:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	3058	446	0.12	0.48	3.9274	0.0666	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	COLO320_LARGE_INTESTINE	0.12	0.48	3.994	TRUE	0	0	0	16	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	RPRD2--GOLPH3L	378	115	RPRD2	2578	chr1:150337395:+	GOLPH3L	29116	chr1:150621224:-	ONLY_REF_SPLICE	YES	41	453	0.92	0.52	3.5946	1.0936	{Klijn_CCL:Colo-Rectal=1},RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,GOLPH3L->chr1:150618701-150669630:-,golgi_phosphoprotein_3_like	COLO320_LARGE_INTESTINE	0.52	0.92	4.6882	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	172	73	PVT1	1202	chr8:128806980:+	MYC	32414	chr8:128752642:+	ONLY_REF_SPLICE	YES	5342	5063	0.04	0.05	1.6356	0.6942	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.04	0.05	2.3298	TRUE	0	3	0	4	1	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	ANP32E--GOLPH3L	176	28	ANP32E	7151	chr1:150198940:-	GOLPH3L	17514	chr1:150636239:-	ONLY_REF_SPLICE	YES	576	238	0.26	0.46	1.6737	0.2663	{Klijn_CCL:Colo-Rectal=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,GOLPH3L->chr1:150618701-150669630:-,golgi_phosphoprotein_3_like	COLO320_LARGE_INTESTINE	0.26	0.46	1.94	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TN	125	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1887	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO320_LARGE_INTESTINE	1	1	1.1887	FALSE	369	2501	205	193	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TC	91	12	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8654	0.1141	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO320_LARGE_INTESTINE	1	1	0.9795	FALSE	462	80	0	856	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	CHD9--ANKRD26P1	82	24	CHD9	29643	chr16:53297009:+	ANKRD26P1	65314	chr16:46565046:-	ONLY_REF_SPLICE	YES	15	0	0.88	1	0.7798	0.2282	CHD9->Oncogene{Bushman},chr16:53088945-53363062:+,chromodomain_helicase_DNA_binding_protein_9,ANKRD26P1->ankyrin_repeat_domain_26_pseudogene_1,chr16:46503253-46603009:-	COLO320_LARGE_INTESTINE	0.88	1	1.008	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	PCAT1--CASC11	76	14	PCAT1	3907	chr8:128018863:+	CASC11	10908	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.7227	0.1331	PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	COLO320_LARGE_INTESTINE	0.97	1	0.8558	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	TIMM23B--LINC00843	72	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6847	0.1522	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COLO320_LARGE_INTESTINE	1	1	0.8369	TRUE	508	994	45	981	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	RP11-680G10.1--GSE1	63	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	31	1	0.7	0.5991	0.0856	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COLO320_LARGE_INTESTINE	0.7	1	0.6847	TRUE	465	1949	224	605	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	RP11-89K10.1--CASC11	49	11	RP11-89K10.1	2156	chr8:127601535:+	CASC11	13412	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	20	0	0.75	1	0.466	0.1046	RP11-89K10.1->chr8:127570120-127725660:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	COLO320_LARGE_INTESTINE	0.75	1	0.5706	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	RP11-680G10.1--GSE1	47	15	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	17	1	0.78	0.4469	0.1426	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COLO320_LARGE_INTESTINE	0.78	1	0.5895	TRUE	458	1351	185	561	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	177	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	6	0	0.97	1	0.0571	1.6832	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.97	1	1.7403	FALSE	344	826	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	182	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	8	0	0.96	1	0.038	1.7307	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.96	1	1.7687	FALSE	344	826	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	TIMM23--RP11-464F9.1	49	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	104	1	0.33	0.98	0.466	0.019	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	COLO320_LARGE_INTESTINE	0.33	0.98	0.485	TRUE	519	3926	326	965	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	176	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	8	1	0.96	0.99	0.0475	1.6737	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.96	0.99	1.7212	FALSE	344	826	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	183	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	14	0	0.93	1	0.0285	1.7402	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.93	1	1.7687	FALSE	344	826	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	SRP54--CCDC175	43	17	SRP54	4569	chr14:35465993:+	CCDC175	40855	chr14:59988394:-	ONLY_REF_SPLICE	YES	67	0	0.47	1	0.4089	0.1617	SRP54->chr14:35451163-35498773:+,signal_recognition_particle_54kDa,CCDC175->chr14:59971257-60043549:-,coiled-coil_domain_containing_175	COLO320_LARGE_INTESTINE	0.47	1	0.5706	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	ZNF654--HMGB2	43	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4089	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	COLO320_LARGE_INTESTINE	1	1	0.4089	TRUE	0	0	0	518	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	CYLD--NKD1	35	14	CYLD	10221	chr16:50811852:+	NKD1	35304	chr16:50642205:+	ONLY_REF_SPLICE	YES	23	180	0.68	0.21	0.3328	0.1331	CYLD->ArcherDX_panel,CYLD_lysine_63_deubiquitinase,FoundationOne_panel,Oncogene{Bushman},chr16:50775961-50835846:+,NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1	COLO320_LARGE_INTESTINE	0.21	0.68	0.4659	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	8	121	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0761	1.1506	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.98	1	1.2267	FALSE	344	821	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	AP000525.9--LA16c-60G3.6	35	9	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	76	0	0.37	1	0.3328	0.0856	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	COLO320_LARGE_INTESTINE	0.37	1	0.4184	TRUE	0	42	0	133	42	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	AL589743.1--RP11-536C10.17	35	8	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	81	0	0.35	1	0.3328	0.0761	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	COLO320_LARGE_INTESTINE	0.35	1	0.4089	TRUE	0	33	0	45	33	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PTMA--PTMS	36	1	PTMA	6054	chr2:232576687:+	PTMS	13973	chr12:6879338:+	INCL_NON_REF_SPLICE	YES	3058	391	0.01	0.09	0.3423	0.0095	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	COLO320_LARGE_INTESTINE	0.01	0.09	0.3518	TRUE	0	0	0	16	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TN	16	72	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1522	0.6847	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO320_LARGE_INTESTINE	1	1	0.8369	FALSE	369	2501	205	193	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	HSP90AB1--MT-RNR2	33	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2414	0	0.01	1	0.3138	0.0285	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO320_LARGE_INTESTINE	0.01	1	0.3423	FALSE	13	9	0	364	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND6--MT-TE	32	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3043	0.038	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO320_LARGE_INTESTINE	1	1	0.3423	FALSE	499	1288	110	792	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	114	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	6	0	0.95	1	0.038	1.0841	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.95	1	1.1221	FALSE	344	826	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	113	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	17	0	0.87	1	0.038	1.0746	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.87	1	1.1126	FALSE	344	826	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	114	MT-ND4	1285	chrM:11044:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	NO	25	0	0.82	1	0.0285	1.0841	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.82	1	1.1126	FALSE	344	827	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	RP11-89K10.1--CASC11	30	4	RP11-89K10.1	1057	chr8:127570176:+	CASC11	13412	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	12	0	0.74	1	0.2853	0.038	RP11-89K10.1->chr8:127570120-127725660:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	COLO320_LARGE_INTESTINE	0.74	1	0.3233	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	RPRD2--GOLPH3L	1	116	RPRD2	2578	chr1:150337395:+	GOLPH3L	26869	chr1:150636239:-	ONLY_REF_SPLICE	NO	41	238	0.74	0.33	0.0095	1.1031	{Klijn_CCL:Colo-Rectal=1},RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,GOLPH3L->chr1:150618701-150669630:-,golgi_phosphoprotein_3_like	COLO320_LARGE_INTESTINE	0.33	0.74	1.1126	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	16	47	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	9333	0	0.01	1	0.1522	0.4469	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.01	1	0.5991	FALSE	328	800	43	304	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	84	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	8	0	0.92	1	0.038	0.7988	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.92	1	0.8368	FALSE	344	826	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TN	25	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2377	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO320_LARGE_INTESTINE	1	1	0.2377	FALSE	369	2501	205	193	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TN	3	86	MT-TA	1059	chrM:5597:-	MT-TN	4015	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0.8178	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO320_LARGE_INTESTINE	1	1	0.8463	FALSE	369	2501	205	193	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	12	47	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	316	0	0.16	1	0.1141	0.4469	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.16	1	0.561	FALSE	344	827	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND6--MT-TE	22	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2092	0.0571	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO320_LARGE_INTESTINE	1	1	0.2663	FALSE	499	1288	110	792	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TN	15	33	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1426	0.3138	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO320_LARGE_INTESTINE	1	1	0.4564	FALSE	369	2501	205	193	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TN	23	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2187	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO320_LARGE_INTESTINE	1	1	0.2187	FALSE	369	2501	205	193	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TN	15	31	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1426	0.2948	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO320_LARGE_INTESTINE	1	1	0.4374	FALSE	369	2501	205	193	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND6--MT-TE	19	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.1807	0.1236	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO320_LARGE_INTESTINE	0.94	1	0.3043	FALSE	499	1288	110	792	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	4	73	PVT1	2457	chr8:128808254:+	MYC	32414	chr8:128752642:+	ONLY_REF_SPLICE	YES	4825	5063	0.02	0.01	0.038	0.6942	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.01	0.02	0.7322	TRUE	0	2	0	1	1	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	CASC8--RP11-382A18.2	20	7	CASC8	8114	chr8:128335260:-	RP11-382A18.2	12366	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	7	0	0.79	1	0.1902	0.0666	NEIGHBORS_OVERLAP:-:+:[53357],CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-,RP11-382A18.2->chr8:128351519-128404876:+	COLO320_LARGE_INTESTINE	0.79	1	0.2568	FALSE	0	0	0	1	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TC	18	15	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1712	0.1426	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO320_LARGE_INTESTINE	1	1	0.3138	FALSE	462	80	0	856	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	3	73	PVT1	2520	chr8:128808317:+	MYC	32414	chr8:128752642:+	ONLY_REF_SPLICE	YES	4323	5063	0.02	0.01	0.0285	0.6942	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.01	0.02	0.7227	TRUE	0	2	0	1	1	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	3	73	PVT1	13955	chr8:129001537:+	MYC	32414	chr8:128752642:+	ONLY_REF_SPLICE	YES	79	5063	0.49	0.01	0.0285	0.6942	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.01	0.49	0.7227	TRUE	0	0	0	1	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	CASC8--RP11-382A18.2	20	4	CASC8	6974	chr8:128433074:-	RP11-382A18.2	12366	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.1902	0.038	NEIGHBORS_OVERLAP:-:+:[53357],CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-,RP11-382A18.2->chr8:128351519-128404876:+	COLO320_LARGE_INTESTINE	0.89	1	0.2282	FALSE	0	0	0	1	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PVT1--MYC	2	73	PVT1	1202	chr8:128806980:+	MYC	32416	chr8:128752644:+	ONLY_REF_SPLICE	YES	5342	5025	0.01	0.01	0.019	0.6942	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO320_LARGE_INTESTINE	0.01	0.01	0.7132	TRUE	0	3	0	4	1	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	9	43	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	10	0	0.84	1	0.0856	0.4089	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.84	1	0.4945	FALSE	344	826	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND1--MT-RNR2	9	41	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	36	0	0.58	1	0.0856	0.3899	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO320_LARGE_INTESTINE	0.58	1	0.4755	FALSE	114	26	4	85	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TN	15	17	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1426	0.1617	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO320_LARGE_INTESTINE	1	1	0.3043	FALSE	369	2501	205	193	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TN	7	49	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0666	0.466	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO320_LARGE_INTESTINE	1	1	0.5326	FALSE	369	2501	205	193	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	NPM1P24--SET	19	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1807	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	COLO320_LARGE_INTESTINE	1	1	0.1807	TRUE	0	0	0	434	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PTMA--PTMS	17	7	PTMA	6054	chr2:232576687:+	PTMS	13425	chr12:6878790:+	INCL_NON_REF_SPLICE	YES	3058	139	0.01	0.15	0.1617	0.0666	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	COLO320_LARGE_INTESTINE	0.01	0.15	0.2283	TRUE	0	0	0	16	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	HSP90AB1--MT-RNR2	18	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2440	0	0.01	1	0.1712	0.019	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO320_LARGE_INTESTINE	0.01	1	0.1902	FALSE	13	9	0	364	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	10	32	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	362	0	0.1	1	0.0951	0.3043	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.1	1	0.3994	FALSE	344	827	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	59	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0285	0.5611	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.97	1	0.5896	FALSE	344	821	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PTMA--PTMS	17	3	PTMA	6024	chr2:232576657:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	2847	446	0.01	0.04	0.1617	0.0285	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	COLO320_LARGE_INTESTINE	0.01	0.04	0.1902	TRUE	0	0	0	16	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PCAT1--CASC8	15	10	PCAT1	3907	chr8:128018863:+	CASC8	19014	chr8:128302305:-	ONLY_REF_SPLICE	YES	3	8	0.89	0.76	0.1426	0.0951	PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	COLO320_LARGE_INTESTINE	0.76	0.89	0.2377	TRUE	0	1	0	1	1	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	RP1-34H18.1--NAV3	16	6	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1522	0.0571	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	COLO320_LARGE_INTESTINE	1	1	0.2093	TRUE	254	575	65	124	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND1--MT-RNR2	16	4	MT-ND1	1291	chrM:3597:+	MT-RNR2	5713	chrM:2427:+	INCL_NON_REF_SPLICE	YES	60	7368	0.25	0	0.1522	0.038	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO320_LARGE_INTESTINE	0	0.25	0.1902	FALSE	120	26	5	87	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	11	23	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	13	0	0.72	1	0.1046	0.2187	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.72	1	0.3233	FALSE	344	826	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	ANXA7--P4HA1	16	1	ANXA7	3333	chr10:75160561:-	P4HA1	20750	chr10:74834673:-	ONLY_REF_SPLICE	YES	16	17	0.52	0.5	0.1522	0.0095	ANXA7->annexin_A7,chr10:75134859-75173834:-,P4HA1->chr10:74766975-74856732:-,prolyl_4-hydroxylase_subunit_alpha_1	COLO320_LARGE_INTESTINE	0.5	0.52	0.1617	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TC	16	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1522	0.0095	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO320_LARGE_INTESTINE	1	1	0.1617	FALSE	462	80	0	856	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	FAM84B--RP11-382A18.2	16	0	FAM84B	3129	chr8:127568510:-	RP11-382A18.2	9960	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1522	0	FAM84B->chr8:127564687-127570638:-,family_with_sequence_similarity_84_member_B,RP11-382A18.2->chr8:128351519-128404876:+	COLO320_LARGE_INTESTINE	1	1	0.1522	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND1--MT-RNR2	6	40	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	35	0	0.57	1	0.0571	0.3804	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO320_LARGE_INTESTINE	0.57	1	0.4375	FALSE	114	26	4	85	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TN	15	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1426	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO320_LARGE_INTESTINE	1	1	0.1426	FALSE	369	2501	205	193	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	47	MT-ND4	1649	chrM:11408:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1032	0	0.05	1	0.0285	0.4469	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.05	1	0.4754	FALSE	344	827	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	NEK6--INIP	14	2	NEK6	1480	chr9:127020364:+	INIP	25789	chr9:115456513:-	ONLY_REF_SPLICE	YES	0	53	1	0.23	0.1331	0.019	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-	COLO320_LARGE_INTESTINE	0.23	1	0.1521	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND1--MT-RNR2	13	4	MT-ND1	1323	chrM:3629:+	MT-RNR2	5800	chrM:2514:+	INCL_NON_REF_SPLICE	YES	56	1835	0.23	0.01	0.1236	0.038	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO320_LARGE_INTESTINE	0.01	0.23	0.1616	FALSE	120	26	5	87	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	44	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	22	0	0.68	1	0.0285	0.4184	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.68	1	0.4469	FALSE	344	827	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	32	MT-ND4	2122	chrM:11881:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	8177	0	0	1	0.0571	0.3043	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0	1	0.3614	FALSE	315	784	43	302	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	SENP7--RPL24	13	4	SENP7	3297	chr3:101212717:-	RPL24	32195	chr3:101405401:-	ONLY_REF_SPLICE	YES	11	21	0.61	0.45	0.1236	0.038	SENP7->SUMO1/sentrin_specific_peptidase_7,chr3:101043049-101232085:-,RPL24->chr3:101399935-101405626:-,ribosomal_protein_L24	COLO320_LARGE_INTESTINE	0.45	0.61	0.1616	TRUE	0	0	0	2	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	ANP32E--GOLPH3L	11	9	ANP32E	7151	chr1:150198940:-	GOLPH3L	18646	chr1:150634404:-	ONLY_REF_SPLICE	YES	576	217	0.03	0.08	0.1046	0.0856	{Klijn_CCL:Colo-Rectal=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,GOLPH3L->chr1:150618701-150669630:-,golgi_phosphoprotein_3_like	COLO320_LARGE_INTESTINE	0.03	0.08	0.1902	TRUE	0	0	0	1	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	30	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	22	0	0.61	1	0.0475	0.2853	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.61	1	0.3328	FALSE	344	827	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND6--MT-TE	7	22	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0666	0.2092	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO320_LARGE_INTESTINE	0.94	1	0.2758	FALSE	499	1288	110	792	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TN	5	30	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0.2853	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO320_LARGE_INTESTINE	1	1	0.3328	FALSE	369	2501	205	193	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PTMA--PTMS	12	1	PTMA	6054	chr2:232576687:+	PTMS	13976	chr12:6879341:+	INCL_NON_REF_SPLICE	YES	3058	358	0	0.04	0.1141	0.0095	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	COLO320_LARGE_INTESTINE	0	0.04	0.1236	TRUE	0	0	0	16	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	28	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8	0	0.8	1	0.0475	0.2663	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.8	1	0.3138	FALSE	344	826	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TN	4	32	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0.3043	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO320_LARGE_INTESTINE	1	1	0.3423	FALSE	369	2501	205	193	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	NEK6--INIP	10	8	NEK6	5961	chr9:127055292:+	INIP	25789	chr9:115456513:-	ONLY_REF_SPLICE	YES	10	53	0.64	0.25	0.0951	0.0761	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-	COLO320_LARGE_INTESTINE	0.25	0.64	0.1712	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND6--MT-TE	7	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0666	0.1617	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO320_LARGE_INTESTINE	1	1	0.2283	FALSE	499	1288	110	792	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	32	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.0285	0.3043	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.9	1	0.3328	FALSE	344	826	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	30	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	25	0	0.57	1	0.0285	0.2853	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.57	1	0.3138	FALSE	344	827	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	RP1-34H18.1--RP11-781A6.1	10	2	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0951	0.019	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	COLO320_LARGE_INTESTINE	1	1	0.1141	TRUE	94	160	11	37	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	29	MT-ND4	1195	chrM:10954:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	14	0	0.7	1	0.0285	0.2758	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.7	1	0.3043	FALSE	344	826	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	AP003900.6--AP000345.1	9	3	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.0856	0.0285	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	COLO320_LARGE_INTESTINE	0.8	1	0.1141	TRUE	0	8	0	37	1	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	BTRC--LBX1-AS1	9	1	BTRC	1166	chr10:103113985:+	LBX1-AS1	29258	chr10:102997696:+	ONLY_REF_SPLICE	YES	8	0	0.56	1	0.0856	0.0095	LOCAL_REARRANGEMENT:+:[83915],BTRC->Oncogene{Bushman},beta-transducin_repeat_containing_E3_ubiquitin_protein_ligase,chr10:103113820-103317078:+,LBX1-AS1->LBX1_antisense_RNA_1_(head_to_head),chr10:102989351-103029905:+	COLO320_LARGE_INTESTINE	0.56	1	0.0951	TRUE	0	1	0	1	1	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TC	5	17	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0.1617	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO320_LARGE_INTESTINE	1	1	0.2092	FALSE	462	80	0	856	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TN	9	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0856	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO320_LARGE_INTESTINE	1	1	0.0856	FALSE	369	2501	205	193	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	NEK6--INIP	7	8	NEK6	5961	chr9:127055292:+	INIP	23615	chr9:115478821:-	ONLY_REF_SPLICE	YES	10	59	0.6	0.2	0.0666	0.0761	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-	COLO320_LARGE_INTESTINE	0.2	0.6	0.1427	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	14	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	25	0	0.43	1	0.0475	0.1331	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.43	1	0.1806	FALSE	344	827	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TC	7	6	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0666	0.0571	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO320_LARGE_INTESTINE	1	1	0.1237	FALSE	462	80	0	856	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	AS3MT--WBP1L	8	1	AS3MT	7247	chr10:104638748:+	WBP1L	16033	chr10:104557750:+	ONLY_REF_SPLICE	YES	16	25	0.36	0.26	0.0761	0.0095	LOCAL_REARRANGEMENT:+:[53252],AS3MT->arsenite_methyltransferase,chr10:104629273-104661656:+,WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+	COLO320_LARGE_INTESTINE	0.26	0.36	0.0856	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND6--MT-TE	3	20	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0285	0.1902	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO320_LARGE_INTESTINE	0.92	1	0.2187	FALSE	499	1288	110	792	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TC	4	16	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0.1522	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO320_LARGE_INTESTINE	1	1	0.1902	FALSE	462	80	0	856	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TN	8	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0761	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO320_LARGE_INTESTINE	1	1	0.0761	FALSE	369	2501	205	193	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TC	4	15	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0.1426	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO320_LARGE_INTESTINE	1	1	0.1806	FALSE	462	80	0	856	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PTMA--PTMS	6	7	PTMA	6053	chr2:232576686:+	PTMS	13737	chr12:6879102:+	INCL_NON_REF_SPLICE	YES	3034	372	0	0.03	0.0571	0.0666	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	COLO320_LARGE_INTESTINE	0	0.03	0.1237	TRUE	0	0	0	16	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	APH1A--MT-ND4	7	0	APH1A	4368	chr1:150238613:-	MT-ND4	8645	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0666	0	APH1A->Oncogene{Bushman},aph-1_homolog_A,_gamma_secretase_subunit,chr1:150237804-150241980:-,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	COLO320_LARGE_INTESTINE	1	1	0.0666	FALSE	0	0	0	1	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TN	7	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0666	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO320_LARGE_INTESTINE	1	1	0.0666	FALSE	369	2501	205	193	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	AP000525.9--LA16c-60G3.6	6	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	76	1	0.08	0.88	0.0571	0.0095	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	COLO320_LARGE_INTESTINE	0.08	0.88	0.0666	TRUE	0	5	0	18	5	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO320_LARGE_INTESTINE	1	1	0.0571	FALSE	499	1288	110	792	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PTMA--PTMS	4	8	PTMA	6551	chr2:232577184:+	PTMS	13767	chr12:6879132:+	INCL_NON_REF_SPLICE	NO	2535	500	0	0.02	0.038	0.0761	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	COLO320_LARGE_INTESTINE	0	0.02	0.1141	FALSE	0	0	0	16	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PTMA--PTMS	4	7	PTMA	6060	chr2:232576693:+	PTMS	13750	chr12:6879115:+	INCL_NON_REF_SPLICE	YES	3341	446	0	0.02	0.038	0.0666	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	COLO320_LARGE_INTESTINE	0	0.02	0.1046	TRUE	0	0	0	16	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND1--MT-RNR2	5	2	MT-ND1	1264	chrM:3570:+	MT-RNR2	5687	chrM:2401:+	INCL_NON_REF_SPLICE	YES	35	8634	0.17	0	0.0475	0.019	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO320_LARGE_INTESTINE	0	0.17	0.0665	FALSE	120	26	5	87	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND1--MT-RNR2	4	6	MT-ND1	1227	chrM:3533:+	MT-RNR2	5001	chrM:1715:+	INCL_NON_REF_SPLICE	YES	15	0	0.4	1	0.038	0.0571	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO320_LARGE_INTESTINE	0.4	1	0.0951	FALSE	114	26	4	85	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND1--MT-RNR2	3	10	MT-ND1	1272	chrM:3578:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	YES	36	0	0.27	1	0.0285	0.0951	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO320_LARGE_INTESTINE	0.27	1	0.1236	FALSE	114	26	4	85	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	RP11-123O10.4--GRIP1	5	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0475	0.0095	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO320_LARGE_INTESTINE	1	1	0.057	FALSE	416	2512	207	587	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	1	1	0.0475	FALSE	344	821	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND6--MT-TE	5	0	MT-ND6	1031	chrM:14643:-	MT-TE	4590	chrM:14678:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO320_LARGE_INTESTINE	1	1	0.0475	FALSE	499	1288	110	792	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PTMA--PTMS	3	8	PTMA	6551	chr2:232577184:+	PTMS	13764	chr12:6879129:+	INCL_NON_REF_SPLICE	NO	2535	474	0	0.02	0.0285	0.0761	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	COLO320_LARGE_INTESTINE	0	0.02	0.1046	FALSE	0	0	0	16	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	RP11-120D5.1--MID1	4	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	3	0.88	0.7	0.038	0.0285	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	COLO320_LARGE_INTESTINE	0.7	0.88	0.0665	FALSE	16	356	14	466	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND1--MT-RNR2	3	6	MT-ND1	1246	chrM:3552:+	MT-RNR2	5019	chrM:1733:+	INCL_NON_REF_SPLICE	YES	21	0	0.3	1	0.0285	0.0571	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO320_LARGE_INTESTINE	0.3	1	0.0856	FALSE	114	26	4	85	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PCAT1--CASC8	2	10	PCAT1	3907	chr8:128018863:+	CASC8	17874	chr8:128335399:-	ONLY_REF_SPLICE	YES	3	4	0.8	0.75	0.019	0.0951	PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	COLO320_LARGE_INTESTINE	0.75	0.8	0.1141	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.038	0.0095	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.71	1	0.0475	FALSE	344	821	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	1	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.038	0.0095	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.71	1	0.0475	FALSE	344	821	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	1	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.038	0.0095	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.71	1	0.0475	FALSE	344	821	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PTMA--PTMS	4	1	PTMA	6054	chr2:232576687:+	PTMS	13958	chr12:6879323:+	INCL_NON_REF_SPLICE	YES	3058	548	0	0.01	0.038	0.0095	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	COLO320_LARGE_INTESTINE	0	0.01	0.0475	FALSE	0	0	0	16	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	COLO320_LARGE_INTESTINE	1	1	0.038	TRUE	0	0	0	434	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND1--MT-RNR2	3	3	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	35	7251	0.15	0	0.0285	0.0285	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO320_LARGE_INTESTINE	0	0.15	0.057	FALSE	120	26	5	87	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	PTMA--PTMS	3	2	PTMA	6024	chr2:232576657:+	PTMS	13789	chr12:6879154:+	INCL_NON_REF_SPLICE	YES	2847	542	0	0.01	0.0285	0.019	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	COLO320_LARGE_INTESTINE	0	0.01	0.0475	FALSE	0	0	0	16	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0.019	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO320_LARGE_INTESTINE	1	1	0.0475	FALSE	515	4851	409	746	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	ARHGDIA--MT-ND4	3	1	ARHGDIA	4113	chr17:79826170:-	MT-ND4	8155	chrM:11228:+	INCL_NON_REF_SPLICE	YES	368	11292	0.01	0	0.0285	0.0095	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	COLO320_LARGE_INTESTINE	0	0.01	0.038	FALSE	0	0	0	1	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	1	MT-ND4	1056	chrM:10815:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0285	0.0095	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO320_LARGE_INTESTINE	0.67	1	0.038	FALSE	344	821	44	306	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND6--MT-TE	3	1	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0.0095	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO320_LARGE_INTESTINE	1	1	0.038	FALSE	499	1288	110	792	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	AP003900.6--AP000345.1	3	0	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	COLO320_LARGE_INTESTINE	1	1	0.0285	TRUE	4	17	0	31	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO320_LARGE_INTESTINE	1	1	0.0285	FALSE	499	1288	110	792	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	MT-TA--MT-TN	3	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO320_LARGE_INTESTINE	1	1	0.0285	FALSE	369	2501	205	193	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	COLO320_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	434	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	COLO320_LARGE_INTESTINE	1	1	0.0285	TRUE	22	156	2	142	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	NEK6--INIP	2	2	NEK6	1480	chr9:127020364:+	INIP	23615	chr9:115478821:-	ONLY_REF_SPLICE	YES	0	59	1	0.06	0.019	0.019	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-	COLO320_LARGE_INTESTINE	0.06	1	0.038	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0.019	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO320_LARGE_INTESTINE	1	1	0.038	FALSE	407	2205	196	549	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	RP11-120D5.1--MID1	2	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	3	0.38	0.5	0.019	0.0095	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	COLO320_LARGE_INTESTINE	0.38	0.5	0.0285	FALSE	0	48	1	163	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	ANXA7--P4HA1	2	0	ANXA7	1065	chr10:75173770:-	P4HA1	20750	chr10:74834673:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	ANXA7->annexin_A7,chr10:75134859-75173834:-,P4HA1->chr10:74766975-74856732:-,prolyl_4-hydroxylase_subunit_alpha_1	COLO320_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	CASC8--RP11-382A18.2	2	0	CASC8	8114	chr8:128335260:-	RP11-382A18.2	13521	chr8:128404749:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	NEIGHBORS_OVERLAP:-:+:[53357],CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-,RP11-382A18.2->chr8:128351519-128404876:+	COLO320_LARGE_INTESTINE	1	1	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	DANCR--GNB1	2	0	DANCR	1530	chr4:53579126:+	GNB1	9431	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	COLO320_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	8	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	LDLR--SMARCA4	2	0	LDLR	1254	chr19:11200291:+	SMARCA4	56989	chr19:11141406:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	LOCAL_REARRANGEMENT:+:[23967],LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	COLO320_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	RP11-120D5.1--MID1	1	4	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	3	0.56	0.62	0.0095	0.038	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	COLO320_LARGE_INTESTINE	0.56	0.62	0.0475	FALSE	2	31	0	60	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COLO320_LARGE_INTESTINE	1	1	0.019	TRUE	62	24	1	171	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	NEK6--INIP	1	3	NEK6	5961	chr9:127055292:+	INIP	26989	chr9:115451897:-	ONLY_REF_SPLICE	NO	10	46	0.29	0.08	0.0095	0.0285	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-	COLO320_LARGE_INTESTINE	0.08	0.29	0.038	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	NEK6--INIP	1	2	NEK6	3918	chr9:127048769:+	INIP	25789	chr9:115456513:-	ONLY_REF_SPLICE	YES	7	53	0.3	0.05	0.0095	0.019	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-	COLO320_LARGE_INTESTINE	0.05	0.3	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000202
COLO320_LARGE_INTESTINE	PTMA--PTMS	1	2	PTMA	6593	chr2:232577226:+	PTMS	14193	chr12:6879558:+	ONLY_REF_SPLICE	YES	3226	442	0	0.01	0.0095	0.019	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	COLO320_LARGE_INTESTINE	0	0.01	0.0285	FALSE	0	0	0	16	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	65	1	0.04	0.0095	0.019	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COLO320_LARGE_INTESTINE	0.04	1	0.0285	TRUE	64	13	3	59	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0095	0.019	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO320_LARGE_INTESTINE	1	1	0.0285	FALSE	275	511	55	178	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	B4GALT4--IGSF11	1	1	B4GALT4	12789	chr3:118935087:-	IGSF11	28909	chr3:118668165:-	ONLY_REF_SPLICE	NO	61	0	0.03	1	0.0095	0.0095	NEIGHBORS[65664],B4GALT4->beta-1,4-galactosyltransferase_4,chr3:118930579-118959950:-,IGSF11->chr3:118619404-118864915:-,immunoglobulin_superfamily_member_11	COLO320_LARGE_INTESTINE	0.03	1	0.019	FALSE	1	5	0	1	0	FALSE	ACH-000202
COLO320_LARGE_INTESTINE	NAP1L1--OSBPL8	1	1	NAP1L1	1467	chr12:76478347:-	OSBPL8	28640	chr12:76881398:-	ONLY_REF_SPLICE	YES	162	18	0.01	0.1	0.0095	0.0095	NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1,OSBPL8->chr12:76745577-76953589:-,oxysterol_binding_protein_like_8	COLO320_LARGE_INTESTINE	0.01	0.1	0.019	FALSE	0	0	0	2	0	FALSE	ACH-000202
KP4_PANCREAS	TIMM23B--LINC00843	104	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0903	0.2097	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KP4_PANCREAS	1	1	1.3	TRUE	508	994	45	981	0	FALSE	ACH-000265
KP4_PANCREAS	TIMM23--RP11-464F9.1	71	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	173	2	0.3	0.97	0.7443	0.021	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KP4_PANCREAS	0.3	0.97	0.7653	TRUE	519	3926	326	965	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	55	2	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	12393	38	0	0.6	0.5766	0.021	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	0	0.6	0.5976	FALSE	231	217	16	283	0	FALSE	ACH-000265
KP4_PANCREAS	FOSL2--PLB1	44	17	FOSL2	2375	chr2:28616689:+	PLB1	70501	chr2:28863793:+	ONLY_REF_SPLICE	YES	43	0	0.59	1	0.4613	0.1782	NEIGHBORS[39833],FOSL2->FOS_like_2,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr2:28615315-28640179:+,PLB1->chr2:28680012-28866654:+,phospholipase_B1	KP4_PANCREAS	0.59	1	0.6395	FALSE	0	0	0	1	0	FALSE	ACH-000265
KP4_PANCREAS	ZNF227--COLEC10	43	20	ZNF227	4616	chr19:44722005:+	COLEC10	20444	chr8:120114587:+	ONLY_REF_SPLICE	YES	21	0	0.75	1	0.4508	0.2097	ZNF227->chr19:44711700-44741421:+,zinc_finger_protein_227,COLEC10->chr8:120007691-120118821:+,collectin_subfamily_member_10	KP4_PANCREAS	0.75	1	0.6605	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	ZNF654--HMGB2	46	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4822	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KP4_PANCREAS	1	1	0.4822	TRUE	0	0	0	518	0	FALSE	ACH-000265
KP4_PANCREAS	SMAD4--RP11-267C16.1	44	7	SMAD4	5470	chr18:48556993:+	RP11-267C16.1	33192	chr18:48899108:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4613	0.0734	SMAD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_4,chr18:48494410-48611415:+,RP11-267C16.1->chr18:48872619-49088939:+	KP4_PANCREAS	1	1	0.5347	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	MT-TA--MT-TC	36	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3774	0.0524	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KP4_PANCREAS	1	1	0.4298	FALSE	462	80	0	856	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND6--MT-TE	31	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.325	0.021	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP4_PANCREAS	1	1	0.346	FALSE	499	1288	110	792	0	FALSE	ACH-000265
KP4_PANCREAS	BCR--CES5AP1	20	7	BCR	3536	chr22:23524426:+	CES5AP1	51396	chr22:23701940:-	ONLY_REF_SPLICE	YES	47	0	0.36	1	0.2097	0.0734	LOCAL_INVERSION:+:-:[41566],BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,CES5AP1->carboxylesterase_5A_pseudogene_1,chr22:23701790-23729918:-	KP4_PANCREAS	0.36	1	0.2831	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	MT-CO3--MT-ATP6	11	40	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	47	0.96	0.52	0.1153	0.4193	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP4_PANCREAS	0.52	0.96	0.5346	FALSE	189	492	56	216	0	FALSE	ACH-000265
KP4_PANCREAS	PRDM15--ENTHD1	17	10	PRDM15	32877	chr21:43224694:-	ENTHD1	49796	chr22:40140288:-	ONLY_REF_SPLICE	YES	21	0	0.56	1	0.1782	0.1048	PRDM15->PR_domain_15,chr21:43218385-43299591:-,ENTHD1->ENTH_domain_containing_1,chr22:40139049-40289868:-	KP4_PANCREAS	0.56	1	0.283	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO2	18	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	89	21	0.2	0.51	0.1887	0.0419	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KP4_PANCREAS	0.2	0.51	0.2306	FALSE	59	21	0	114	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND6--MT-TE	18	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1887	0.021	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP4_PANCREAS	1	1	0.2097	FALSE	499	1288	110	792	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	17	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1782	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	1	1	0.1782	FALSE	230	193	14	283	0	FALSE	ACH-000265
KP4_PANCREAS	PLXDC1--TAF13	17	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1782	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	KP4_PANCREAS	1	1	0.1782	TRUE	7	10	0	216	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND6--MT-TE	13	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.1363	0.1153	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP4_PANCREAS	0.92	1	0.2516	FALSE	499	1288	110	792	0	FALSE	ACH-000265
KP4_PANCREAS	RP11-123O10.4--GRIP1	14	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1468	0.0629	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KP4_PANCREAS	1	1	0.2097	FALSE	416	2512	207	587	0	FALSE	ACH-000265
KP4_PANCREAS	NPM1P24--SET	15	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1573	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KP4_PANCREAS	1	1	0.1573	TRUE	0	0	0	434	0	FALSE	ACH-000265
KP4_PANCREAS	MT-CO3--MT-ATP6	4	40	MT-CO3	1113	chrM:9319:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0.4193	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP4_PANCREAS	1	1	0.4612	FALSE	189	492	56	216	0	FALSE	ACH-000265
KP4_PANCREAS	MT-CO3--MT-ATP6	3	42	MT-CO3	1220	chrM:9426:+	MT-ATP6	4919	chrM:8661:+	INCL_NON_REF_SPLICE	YES	5	29	0.9	0.61	0.0315	0.4403	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP4_PANCREAS	0.61	0.9	0.4718	FALSE	189	492	56	216	0	FALSE	ACH-000265
KP4_PANCREAS	MT-TA--MT-TC	12	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1258	0.0524	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KP4_PANCREAS	1	1	0.1782	FALSE	462	80	0	856	0	FALSE	ACH-000265
KP4_PANCREAS	MT-CO3--MT-ATP6	3	40	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	7	133	0.86	0.24	0.0315	0.4193	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP4_PANCREAS	0.24	0.86	0.4508	FALSE	189	492	56	216	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND6--MT-TE	9	16	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0944	0.1677	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP4_PANCREAS	0.93	1	0.2621	FALSE	499	1288	110	792	0	FALSE	ACH-000265
KP4_PANCREAS	HSP90AB1--MT-RNR2	12	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2680	0	0	1	0.1258	0.0105	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KP4_PANCREAS	0	1	0.1363	FALSE	13	9	0	364	0	FALSE	ACH-000265
KP4_PANCREAS	MT-CO3--MT-ATP6	3	37	MT-CO3	1083	chrM:9289:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	0	27	1	0.6	0.0315	0.3879	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP4_PANCREAS	0.6	1	0.4194	FALSE	189	492	56	216	0	FALSE	ACH-000265
KP4_PANCREAS	SMAD4--RP11-267C16.1	12	1	SMAD4	5470	chr18:48556993:+	RP11-267C16.1	43939	chr18:49086963:+	ONLY_REF_SPLICE	YES	0	3	1	0.81	0.1258	0.0105	SMAD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_4,chr18:48494410-48611415:+,RP11-267C16.1->chr18:48872619-49088939:+	KP4_PANCREAS	0.81	1	0.1363	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	MT-ND6--MT-TE	6	24	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0629	0.2516	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP4_PANCREAS	1	1	0.3145	FALSE	499	1288	110	792	0	FALSE	ACH-000265
KP4_PANCREAS	HSP90AB1--MT-RNR2	11	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2696	0	0	1	0.1153	0.0105	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KP4_PANCREAS	0	1	0.1258	FALSE	13	9	0	364	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	11	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12395	0	0	1	0.1153	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	0	1	0.1258	FALSE	231	205	14	283	0	FALSE	ACH-000265
KP4_PANCREAS	MT-CO3--MT-ATP6	5	24	MT-CO3	1038	chrM:9244:+	MT-ATP6	5225	chrM:8967:+	INCL_NON_REF_SPLICE	YES	0	105	1	0.22	0.0524	0.2516	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP4_PANCREAS	0.22	1	0.304	FALSE	189	492	56	216	0	FALSE	ACH-000265
KP4_PANCREAS	RP11-680G10.1--GSE1	9	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	25	1	0.4	0.0944	0.0839	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KP4_PANCREAS	0.4	1	0.1783	TRUE	458	1351	185	561	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND5--MT-RNR2	10	3	MT-ND5	2680	chrM:14016:+	MT-RNR2	6360	chrM:2218:+	INCL_NON_REF_SPLICE	YES	769	7913	0.02	0	0.1048	0.0315	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KP4_PANCREAS	0	0.02	0.1363	FALSE	4	13	1	9	0	FALSE	ACH-000265
KP4_PANCREAS	MT-CO3--MT-ATP6	10	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.1048	0.021	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP4_PANCREAS	0.8	1	0.1258	FALSE	189	492	56	216	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	10	1	MT-ND4	1540	chrM:11299:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15194	0	0	1	0.1048	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	0	1	0.1153	FALSE	231	217	16	283	0	FALSE	ACH-000265
KP4_PANCREAS	CLTC--RPS6KB1	9	4	CLTC	5948	chr17:57728677:+	RPS6KB1	41184	chr17:57987923:+	ONLY_REF_SPLICE	YES	424	61	0.03	0.18	0.0944	0.0419	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	KP4_PANCREAS	0.03	0.18	0.1363	TRUE	0	0	0	1	0	FALSE	ACH-000265
KP4_PANCREAS	C15orf57--CBX3	8	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	40	68	0.26	0.17	0.0839	0.0629	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KP4_PANCREAS	0.17	0.26	0.1468	TRUE	267	562	48	632	0	FALSE	ACH-000265
KP4_PANCREAS	C15orf57--CBX3	8	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	37	79	0.26	0.14	0.0839	0.0524	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KP4_PANCREAS	0.14	0.26	0.1363	TRUE	267	562	48	632	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO2	9	1	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	82	18	0.11	0.36	0.0944	0.0105	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KP4_PANCREAS	0.11	0.36	0.1049	FALSE	59	21	0	114	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	9	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0944	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	1	1	0.0944	FALSE	230	198	14	283	0	FALSE	ACH-000265
KP4_PANCREAS	GAPDH--MT-RNR2	8	3	GAPDH	4975	chr12:6647091:+	MT-RNR2	8439	chrM:1688:+	INCL_NON_REF_SPLICE	YES	10786	0	0	1	0.0839	0.0315	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KP4_PANCREAS	0	1	0.1154	FALSE	0	0	0	1	0	FALSE	ACH-000265
KP4_PANCREAS	MT-CO3--MT-ATP6	3	23	MT-CO3	1039	chrM:9245:+	MT-ATP6	5321	chrM:9063:+	INCL_NON_REF_SPLICE	YES	0	44	1	0.37	0.0315	0.2411	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP4_PANCREAS	0.37	1	0.2726	FALSE	189	492	56	216	0	FALSE	ACH-000265
KP4_PANCREAS	MT-CO3--MT-ATP6	8	2	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	6	0	0.62	1	0.0839	0.021	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP4_PANCREAS	0.62	1	0.1049	FALSE	189	492	56	216	0	FALSE	ACH-000265
KP4_PANCREAS	RP11-680G10.1--GSE1	7	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	33	1	0.27	0.0734	0.0524	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KP4_PANCREAS	0.27	1	0.1258	TRUE	465	1949	224	605	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO1	8	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KP4_PANCREAS	1	1	0.0839	FALSE	183	104	9	328	0	FALSE	ACH-000265
KP4_PANCREAS	SPECC1L--THOC5	8	0	SPECC1L	14016	chr22:24734445:+	THOC5	31664	chr22:29945147:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0839	0	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,THOC5->Oncogene{Bushman},THO_complex_5,chr22:29901868-29951205:-	KP4_PANCREAS	1	1	0.0839	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	TXNRD2--RP3-522J7.6	8	0	TXNRD2	4357	chr22:19918553:-	RP3-522J7.6	26675	chr22:50231200:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0	TXNRD2->chr22:19863040-19929341:-,thioredoxin_reductase_2,RP3-522J7.6->chr22:50226264-50231434:-	KP4_PANCREAS	1	1	0.0839	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	MT-CO3--MT-ATP6	3	19	MT-CO3	1020	chrM:9226:+	MT-ATP6	5206	chrM:8948:+	INCL_NON_REF_SPLICE	YES	0	142	1	0.13	0.0315	0.1992	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP4_PANCREAS	0.13	1	0.2307	FALSE	189	492	56	216	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	7	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11973	0	0	1	0.0734	0.0315	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	0	1	0.1049	FALSE	231	217	16	283	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND6--MT-TE	6	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0629	0.0629	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP4_PANCREAS	1	1	0.1258	FALSE	499	1288	110	792	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-CO2	6	4	MT-ND4	1496	chrM:11255:+	MT-CO2	5511	chrM:7718:+	INCL_NON_REF_SPLICE	YES	13584	23	0	0.3	0.0629	0.0419	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KP4_PANCREAS	0	0.3	0.1048	FALSE	5	1	0	19	0	FALSE	ACH-000265
KP4_PANCREAS	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0734	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KP4_PANCREAS	1	1	0.0734	FALSE	292	1546	117	613	0	FALSE	ACH-000265
KP4_PANCREAS	ZNF227--COLEC10	4	11	ZNF227	3044	chr19:44717397:+	COLEC10	20444	chr8:120114587:+	ONLY_REF_SPLICE	YES	25	0	0.38	1	0.0419	0.1153	ZNF227->chr19:44711700-44741421:+,zinc_finger_protein_227,COLEC10->chr8:120007691-120118821:+,collectin_subfamily_member_10	KP4_PANCREAS	0.38	1	0.1572	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	FOSL2--PLB1	4	9	FOSL2	2375	chr2:28616689:+	PLB1	71576	chr2:28865724:+	ONLY_REF_SPLICE	YES	43	0	0.23	1	0.0419	0.0944	NEIGHBORS[39833],FOSL2->FOS_like_2,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr2:28615315-28640179:+,PLB1->chr2:28680012-28866654:+,phospholipase_B1	KP4_PANCREAS	0.23	1	0.1363	FALSE	0	0	0	1	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	6	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	13670	0	0	1	0.0629	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	0	1	0.0734	FALSE	231	205	14	283	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-CO2	6	1	MT-ND4	1209	chrM:10968:+	MT-CO2	5522	chrM:7729:+	INCL_NON_REF_SPLICE	NO	10358	28	0	0.2	0.0629	0.0105	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KP4_PANCREAS	0	0.2	0.0734	FALSE	5	1	0	19	0	FALSE	ACH-000265
KP4_PANCREAS	RP11-96H19.1--RP11-446N19.1	6	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.88	0.78	0.0629	0.0105	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KP4_PANCREAS	0.78	0.88	0.0734	FALSE	515	4851	409	746	0	FALSE	ACH-000265
KP4_PANCREAS	USP34--NRXN1	6	1	USP34	1120	chr2:61697785:-	NRXN1	103853	chr2:50724852:-	ONLY_REF_SPLICE	YES	12	0	0.37	1	0.0629	0.0105	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,NRXN1->chr2:50145643-51259674:-,neurexin_1	KP4_PANCREAS	0.37	1	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	5	4	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	12297	0	0	1	0.0524	0.0419	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	0	1	0.0943	FALSE	231	217	16	283	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND6--MT-TE	3	12	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0315	0.1258	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP4_PANCREAS	0.94	1	0.1573	FALSE	499	1288	110	792	0	FALSE	ACH-000265
KP4_PANCREAS	MT-CO3--MT-ATP6	3	11	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	2	2	0.88	0.88	0.0315	0.1153	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP4_PANCREAS	0.88	0.88	0.1468	FALSE	189	492	56	216	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND5--MT-RNR2	5	3	MT-ND5	2813	chrM:14149:+	MT-RNR2	6390	chrM:2248:+	INCL_NON_REF_SPLICE	YES	0	7430	1	0	0.0524	0.0315	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KP4_PANCREAS	0	1	0.0839	FALSE	4	13	1	9	0	FALSE	ACH-000265
KP4_PANCREAS	RP11-123O10.4--GRIP1	5	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0524	0.0315	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KP4_PANCREAS	1	1	0.0839	FALSE	93	270	15	244	0	FALSE	ACH-000265
KP4_PANCREAS	RP11-96H19.1--RP11-446N19.1	5	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0524	0.0315	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KP4_PANCREAS	0.89	1	0.0839	FALSE	407	2205	196	549	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	5	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	12248	0	0	1	0.0524	0.021	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	0	1	0.0734	FALSE	231	217	16	283	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO1	4	5	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	220	16980	0.04	0	0.0419	0.0524	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KP4_PANCREAS	0	0.04	0.0943	FALSE	183	104	9	328	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO1	4	5	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	38	18845	0.19	0	0.0419	0.0524	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KP4_PANCREAS	0	0.19	0.0943	FALSE	183	104	9	328	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO1	3	9	MT-ATP6	1444	chrM:8970:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	176	16571	0.06	0	0.0315	0.0944	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KP4_PANCREAS	0	0.06	0.1259	FALSE	183	104	9	328	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO1	4	5	MT-ATP6	1537	chrM:9063:+	MT-CO1	5319	chrM:6541:+	INCL_NON_REF_SPLICE	YES	79	18259	0.1	0	0.0419	0.0524	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KP4_PANCREAS	0	0.1	0.0943	FALSE	183	104	9	328	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	5	1	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	15191	0	0	1	0.0524	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	0	1	0.0629	FALSE	231	217	16	283	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND5--MT-RNR2	4	5	MT-ND5	2718	chrM:14054:+	MT-RNR2	5841	chrM:1699:+	INCL_NON_REF_SPLICE	YES	6	0	0.6	1	0.0419	0.0524	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KP4_PANCREAS	0.6	1	0.0943	FALSE	4	13	1	9	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO1	5	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KP4_PANCREAS	1	1	0.0524	FALSE	183	104	9	328	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO2	4	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	89	16	0.08	0.33	0.0419	0.0419	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KP4_PANCREAS	0.08	0.33	0.0838	FALSE	59	21	0	114	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO2	4	4	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	87	16	0.08	0.33	0.0419	0.0419	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KP4_PANCREAS	0.08	0.33	0.0838	FALSE	59	21	0	114	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO2	5	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KP4_PANCREAS	1	1	0.0524	FALSE	59	21	0	114	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO1	3	7	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	NO	221	0	0.04	1	0.0315	0.0734	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KP4_PANCREAS	0.04	1	0.1049	FALSE	182	97	9	327	0	FALSE	ACH-000265
KP4_PANCREAS	SMAD4--RP11-267C16.1	4	3	SMAD4	5470	chr18:48556993:+	RP11-267C16.1	42773	chr18:49058482:+	ONLY_REF_SPLICE	YES	0	4	1	0.64	0.0419	0.0315	SMAD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_4,chr18:48494410-48611415:+,RP11-267C16.1->chr18:48872619-49088939:+	KP4_PANCREAS	0.64	1	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	3	6	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	12593	0	0	1	0.0315	0.0629	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	0	1	0.0944	FALSE	231	217	16	283	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	3	6	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	11734	0	0	1	0.0315	0.0629	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	0	1	0.0944	FALSE	231	217	16	283	0	FALSE	ACH-000265
KP4_PANCREAS	NPM1P24--SET	4	2	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	34	1467	0.15	0	0.0419	0.021	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KP4_PANCREAS	0	0.15	0.0629	FALSE	0	0	0	434	0	FALSE	ACH-000265
KP4_PANCREAS	NPM1P24--SET	4	2	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	NO	34	1359	0.15	0	0.0419	0.021	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KP4_PANCREAS	0	0.15	0.0629	FALSE	0	0	0	434	0	FALSE	ACH-000265
KP4_PANCREAS	SMAD4--RP11-267C16.1	3	6	SMAD4	5470	chr18:48556993:+	RP11-267C16.1	34259	chr18:48913542:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0.0629	SMAD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_4,chr18:48494410-48611415:+,RP11-267C16.1->chr18:48872619-49088939:+	KP4_PANCREAS	1	1	0.0944	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO1	3	5	MT-ATP6	1174	chrM:8700:+	MT-CO1	5204	chrM:6426:+	INCL_NON_REF_SPLICE	YES	263	16494	0.03	0	0.0315	0.0524	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KP4_PANCREAS	0	0.03	0.0839	FALSE	183	104	9	328	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	4	1	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	NO	10385	0	0	1	0.0419	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	0	1	0.0524	FALSE	230	197	14	283	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-CO2	4	1	MT-ND4	1222	chrM:10981:+	MT-CO2	5514	chrM:7721:+	INCL_NON_REF_SPLICE	YES	10572	28	0	0.15	0.0419	0.0105	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KP4_PANCREAS	0	0.15	0.0524	FALSE	5	1	0	19	0	FALSE	ACH-000265
KP4_PANCREAS	MT-TA--MT-TC	3	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0.0524	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KP4_PANCREAS	1	1	0.0839	FALSE	462	80	0	856	0	FALSE	ACH-000265
KP4_PANCREAS	TMEM9B--SCUBE2	4	1	TMEM9B	3782	chr11:8983639:-	SCUBE2	35931	chr11:9047401:-	ONLY_REF_SPLICE	YES	83	0	0.06	1	0.0419	0.0105	LOCAL_REARRANGEMENT:-:[54513],TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-,SCUBE2->chr11:9041071-9159661:-,signal_peptide,_CUB_domain_and_EGF_like_domain_containing_2	KP4_PANCREAS	0.06	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	EIF1--RPS28	4	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KP4_PANCREAS	1	1	0.0419	TRUE	0	0	0	81	0	FALSE	ACH-000265
KP4_PANCREAS	EIF1--RPS28	4	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KP4_PANCREAS	1	1	0.0419	TRUE	0	0	0	81	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO2	4	0	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KP4_PANCREAS	1	1	0.0419	FALSE	59	21	0	114	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO2	4	0	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KP4_PANCREAS	1	1	0.0419	FALSE	59	21	0	114	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO2	3	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	89	18	0.07	0.28	0.0315	0.0419	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KP4_PANCREAS	0.07	0.28	0.0734	FALSE	59	21	0	114	0	FALSE	ACH-000265
KP4_PANCREAS	MT-CO2--MT-ND2	3	4	MT-CO2	1349	chrM:7934:+	MT-ND2	4908	chrM:4693:+	INCL_NON_REF_SPLICE	YES	12	7385	0.37	0	0.0315	0.0419	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KP4_PANCREAS	0	0.37	0.0734	FALSE	105	46	5	21	0	FALSE	ACH-000265
KP4_PANCREAS	MT-CO3--MT-ATP6	3	4	MT-CO3	1006	chrM:9212:+	MT-ATP6	4736	chrM:8478:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0315	0.0419	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP4_PANCREAS	1	1	0.0734	FALSE	189	492	56	216	0	FALSE	ACH-000265
KP4_PANCREAS	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP4_PANCREAS	1	1	0.0419	FALSE	189	492	56	216	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	4	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	1	1	0.0419	FALSE	230	193	14	283	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	4	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	1	1	0.0419	FALSE	230	193	14	283	0	FALSE	ACH-000265
KP4_PANCREAS	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KP4_PANCREAS	1	1	0.0419	FALSE	462	80	0	856	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO1	3	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	221	18546	0.03	0	0.0315	0.0315	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KP4_PANCREAS	0	0.03	0.063	FALSE	183	104	9	328	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	3	3	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	12362	11	0	0.35	0.0315	0.0315	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	0	0.35	0.063	FALSE	231	217	16	283	0	FALSE	ACH-000265
KP4_PANCREAS	SPIDR--PES1	3	3	SPIDR	4404	chr8:48192605:+	PES1	41147	chr22:31001504:-	ONLY_REF_SPLICE	YES	57	1	0.1	0.86	0.0315	0.0315	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,PES1->chr22:30972612-31003070:-,pescadillo_ribosomal_biogenesis_factor_1	KP4_PANCREAS	0.1	0.86	0.063	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	13614	0	0	1	0.0315	0.021	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	0	1	0.0525	FALSE	231	217	16	283	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1783	chrM:11542:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12369	0	0	1	0.0315	0.021	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	0	1	0.0525	FALSE	231	217	16	283	0	FALSE	ACH-000265
KP4_PANCREAS	NPM1P24--SET	3	2	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	34	1360	0.13	0	0.0315	0.021	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KP4_PANCREAS	0	0.13	0.0525	FALSE	0	0	0	434	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND4--MT-ATP8	3	1	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	14977	11	0	0.27	0.0315	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP4_PANCREAS	0	0.27	0.042	FALSE	231	217	16	283	0	FALSE	ACH-000265
KP4_PANCREAS	RP11-275N1.1--NEBL	3	1	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	1	1	0.8	0.8	0.0315	0.0105	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	KP4_PANCREAS	0.8	0.8	0.042	TRUE	0	2	0	25	2	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KP4_PANCREAS	1	1	0.0315	FALSE	183	104	9	328	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO2	3	0	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KP4_PANCREAS	1	1	0.0315	FALSE	59	21	0	114	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO2	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KP4_PANCREAS	1	1	0.0315	FALSE	59	21	0	114	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ATP6--MT-CO2	3	0	MT-ATP6	1124	chrM:8650:+	MT-CO2	4767	chrM:7671:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KP4_PANCREAS	1	1	0.0315	FALSE	59	21	0	114	0	FALSE	ACH-000265
KP4_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP4_PANCREAS	1	1	0.0315	FALSE	499	1288	110	792	0	FALSE	ACH-000265
KP4_PANCREAS	BCAS4--PTPN1	2	3	BCAS4	7130	chr20:49458437:+	PTPN1	16840	chr20:49191054:+	ONLY_REF_SPLICE	YES	119	60	0.04	0.08	0.021	0.0315	{Klijn_CCL:Lung=1},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,PTPN1->chr20:49126891-49201299:+,protein_tyrosine_phosphatase,_non-receptor_type_1	KP4_PANCREAS	0.04	0.08	0.0525	TRUE	0	0	0	1	0	FALSE	ACH-000265
KP4_PANCREAS	PICK1--AP000233.4	2	1	PICK1	3960	chr22:38455352:+	AP000233.4	17785	chr21:26547759:-	ONLY_REF_SPLICE	YES	35	0	0.08	1	0.021	0.0105	PICK1->Oncogene{Bushman},chr22:38452318-38471708:+,protein_interacting_with_PRKCA_1,AP000233.4->chr21:26541745-26706139:-	KP4_PANCREAS	0.08	1	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	PICK1--AP000233.4	2	1	PICK1	2540	chr22:38453857:+	AP000233.4	17785	chr21:26547759:-	ONLY_REF_SPLICE	YES	46	0	0.06	1	0.021	0.0105	PICK1->Oncogene{Bushman},chr22:38452318-38471708:+,protein_interacting_with_PRKCA_1,AP000233.4->chr21:26541745-26706139:-	KP4_PANCREAS	0.06	1	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	APP--LINC00316	2	0	APP	20667	chr21:27326904:-	LINC00316	33342	chr21:46758793:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,LINC00316->chr21:46758505-46761905:-,long_intergenic_non-protein_coding_RNA_316	KP4_PANCREAS	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KP4_PANCREAS	1	1	0.021	FALSE	125	705	46	456	0	FALSE	ACH-000265
KP4_PANCREAS	RCC1--RPN2	2	0	RCC1	3948	chr1:28836616:+	RPN2	24909	chr20:35832288:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RPN2->chr20:35806813-35870022:+,ribophorin_II	KP4_PANCREAS	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	RP11-275N1.1--NEBL	2	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	KP4_PANCREAS	1	1	0.021	TRUE	0	0	0	21	0	FALSE	ACH-000265
KP4_PANCREAS	TRPM7--TMEM14B	2	0	TRPM7	13722	chr15:50916363:-	TMEM14B	51978	chr6:10756700:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	TRPM7->chr15:50844670-50979012:-,transient_receptor_potential_cation_channel_subfamily_M_member_7,TMEM14B->chr6:10747992-10852986:+,transmembrane_protein_14B	KP4_PANCREAS	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0105	0.0315	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KP4_PANCREAS	0.8	1	0.042	FALSE	275	511	55	178	0	FALSE	ACH-000265
KP4_PANCREAS	SMAD4--RP11-267C16.1	1	3	SMAD4	5470	chr18:48556993:+	RP11-267C16.1	40621	chr18:49051332:+	ONLY_REF_SPLICE	NO	0	2	1	0.67	0.0105	0.0315	SMAD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_4,chr18:48494410-48611415:+,RP11-267C16.1->chr18:48872619-49088939:+	KP4_PANCREAS	0.67	1	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000265
KP4_PANCREAS	RORA--ANXA2	1	2	RORA	8639	chr15:60969350:-	ANXA2	65791	chr15:60646412:-	ONLY_REF_SPLICE	YES	1	2352	0.75	0	0.0105	0.021	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	KP4_PANCREAS	0	0.75	0.0315	FALSE	0	0	0	1	0	FALSE	ACH-000265
KP4_PANCREAS	RORA--ANXA2	1	2	RORA	13827	chr15:60884586:-	ANXA2	65791	chr15:60646412:-	ONLY_REF_SPLICE	YES	2	2352	0.6	0	0.0105	0.021	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	KP4_PANCREAS	0	0.6	0.0315	FALSE	0	0	0	2	0	FALSE	ACH-000265
KP4_PANCREAS	RORA--ANXA2	1	1	RORA	1267	chr15:61521252:-	ANXA2	59082	chr15:60656722:-	ONLY_REF_SPLICE	YES	1	2186	0.67	0	0.0105	0.0105	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	KP4_PANCREAS	0	0.67	0.021	FALSE	0	1	0	4	0	FALSE	ACH-000265
KP4_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	2	1	0.5	0.0105	0.0105	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KP4_PANCREAS	0.5	1	0.021	FALSE	467	2173	244	435	0	FALSE	ACH-000265
KP4_PANCREAS	ZNF141--PCGF3	1	1	ZNF141	1173	chr4:331775:+	PCGF3	25978	chr4:755067:+	ONLY_REF_SPLICE	YES	19	90	0.1	0.02	0.0105	0.0105	ZNF141->chr4:331603-378653:+,zinc_finger_protein_141,PCGF3->chr4:699537-764428:+,polycomb_group_ring_finger_3	KP4_PANCREAS	0.02	0.1	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000265
HCC1833_LUNG	CYB561A3--CXCL16	166	4	CYB561A3	5097	chr11:61125675:-	CXCL16	22184	chr17:4637289:-	INCL_NON_REF_SPLICE	YES	129	217	0.57	0.44	1.9032	0.0459	GTEx&tcga_normals:41/3694=1.11%,GTEx_FI:{Lung=[count:16=pct:9.6],Blood=[count:10=pct:5.7],Spleen=[count:10=pct:8.9],Whole_Blood=[count:8=pct:6.1],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Liver=[count:2=pct:1.7],Breast=[count:2=pct:1.8],Esophagus=[count:2=pct:0.5],Stomach=[count:1=pct:1.1],Salivary_Gland=[count:1=pct:2.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=17;pct=0.20%;dist=Whole_Blood=5,Lung=4,Spleen=4,Artery_-_Aorta=1,Brain_-_Hippocampus=1,Artery_-_Coronary=1,Liver=1},CYB561A3->chr11:61116217-61129771:-,cytochrome_b561_family_member_A3,CXCL16->C-X-C_motif_chemokine_ligand_16,chr17:4636821-4643217:-	HCC1833_LUNG	0.44	0.57	1.9491	TRUE	43	61	0	4	0	FALSE	ACH-000712
HCC1833_LUNG	TAOK2--ABCA4	133	57	TAOK2	2008	chr16:29985969:+	ABCA4	62901	chr1:94476941:-	ONLY_REF_SPLICE	YES	153	0	0.55	1	1.5248	0.6535	TAOK2->TAO_kinase_2,chr16:29984962-30003582:+,ABCA4->ATP_binding_cassette_subfamily_A_member_4,chr1:94458393-94586688:-	HCC1833_LUNG	0.55	1	2.1783	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	TIMM23B--LINC00843	128	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.4675	0.2866	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1833_LUNG	0.99	1	1.7541	TRUE	508	994	45	981	0	FALSE	ACH-000712
HCC1833_LUNG	RP11-499F3.2--TYW1	70	1	RP11-499F3.2	1198	chr15:82163269:-	TYW1	23788	chr7:66648113:+	ONLY_REF_SPLICE	YES	0	53	1	0.57	0.8025	0.0115	RP11-499F3.2->chr15:81952823-82163466:-,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	HCC1833_LUNG	0.57	1	0.814	TRUE	1	3	0	7	3	TRUE	ACH-000712
HCC1833_LUNG	TIMM23--RP11-464F9.1	62	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	161	3	0.28	0.95	0.7108	0.0115	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC1833_LUNG	0.28	0.95	0.7223	TRUE	519	3926	326	965	0	FALSE	ACH-000712
HCC1833_LUNG	ITPR2--SSPN	52	14	ITPR2	10193	chr12:26864106:-	SSPN	74097	chr12:26377226:+	ONLY_REF_SPLICE	YES	12	0	0.85	1	0.5962	0.1605	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_INVERSION:-:+:[38119],ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	HCC1833_LUNG	0.85	1	0.7567	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	RABEP2--KCNB2	47	19	RABEP2	3613	chr16:28935724:-	KCNB2	22151	chr8:73848170:+	ONLY_REF_SPLICE	YES	186	46	0.26	0.59	0.5389	0.2178	RABEP2->chr16:28915742-28947847:-,rabaptin,_RAB_GTPase_binding_effector_protein_2,KCNB2->chr8:73449626-73850584:+,potassium_voltage-gated_channel_subfamily_B_member_2	HCC1833_LUNG	0.26	0.59	0.7567	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	KANSL1--ARL17B	49	9	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	27	14	0.68	0.81	0.5618	0.1032	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC1833_LUNG	0.68	0.81	0.665	TRUE	181	1564	124	196	0	FALSE	ACH-000712
HCC1833_LUNG	PLXDC1--TAF13	46	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5274	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCC1833_LUNG	1	1	0.5274	TRUE	7	10	0	216	0	FALSE	ACH-000712
HCC1833_LUNG	ATF6--PBX1	34	27	ATF6	6341	chr1:161762117:+	PBX1	69230	chr1:164818577:+	ONLY_REF_SPLICE	YES	93	201	0.4	0.23	0.3898	0.3096	ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	HCC1833_LUNG	0.23	0.4	0.6994	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	LINC01014--KCNMB2	31	4	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	3	1	0.92	0.97	0.3554	0.0459	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	HCC1833_LUNG	0.92	0.97	0.4013	FALSE	11	60	26	37	0	FALSE	ACH-000712
HCC1833_LUNG	ATF6--PBX1	26	17	ATF6	6341	chr1:161762117:+	PBX1	72722	chr1:164853779:+	ONLY_REF_SPLICE	YES	93	8	0.32	0.84	0.2981	0.1949	ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	HCC1833_LUNG	0.32	0.84	0.493	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	MT-TA--MT-TC	26	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2981	0.0344	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1833_LUNG	1	1	0.3325	FALSE	462	80	0	856	0	FALSE	ACH-000712
HCC1833_LUNG	KIAA0556--SH2B1	25	4	KIAA0556	2101	chr16:27585277:+	SH2B1	49974	chr16:28880327:+	ONLY_REF_SPLICE	YES	0	148	1	0.16	0.2866	0.0459	KIAA0556->KIAA0556,chr16:27561454-27791690:+,SH2B1->SH2B_adaptor_protein_1,chr16:28857921-28885526:+	HCC1833_LUNG	0.16	1	0.3325	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	LINC01014--KCNMB2	23	6	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	3	2	0.91	0.94	0.2637	0.0688	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	HCC1833_LUNG	0.91	0.94	0.3325	FALSE	12	33	18	33	0	FALSE	ACH-000712
HCC1833_LUNG	CCDC18--LUZP2	23	3	CCDC18	1934	chr1:93646409:+	LUZP2	53730	chr11:25098875:+	ONLY_REF_SPLICE	YES	6	0	0.81	1	0.2637	0.0344	CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18,LUZP2->chr11:24518516-25104150:+,leucine_zipper_protein_2	HCC1833_LUNG	0.81	1	0.2981	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	MT-ND6--MT-TE	23	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2637	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1833_LUNG	1	1	0.2637	FALSE	499	1288	110	792	0	FALSE	ACH-000712
HCC1833_LUNG	RP11-123O10.4--GRIP1	21	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2408	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1833_LUNG	1	1	0.2408	FALSE	416	2512	207	587	0	FALSE	ACH-000712
HCC1833_LUNG	MT-ND6--MT-TE	16	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1834	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1833_LUNG	1	1	0.1834	FALSE	499	1288	110	792	0	FALSE	ACH-000712
HCC1833_LUNG	MT-ND6--MT-TE	11	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.1261	0.149	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1833_LUNG	0.89	1	0.2751	FALSE	499	1288	110	792	0	FALSE	ACH-000712
HCC1833_LUNG	MT-ND6--MT-TE	11	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1261	0.0688	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1833_LUNG	1	1	0.1949	FALSE	499	1288	110	792	0	FALSE	ACH-000712
HCC1833_LUNG	KIAA0556--SH2B1	9	7	KIAA0556	3558	chr16:27629863:+	SH2B1	49974	chr16:28880327:+	INCL_NON_REF_SPLICE	YES	21	148	0.43	0.1	0.1032	0.0803	KIAA0556->KIAA0556,chr16:27561454-27791690:+,SH2B1->SH2B_adaptor_protein_1,chr16:28857921-28885526:+	HCC1833_LUNG	0.1	0.43	0.1835	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	AUTS2--ABCA4	8	2	AUTS2	2044	chr7:69064948:+	ABCA4	38926	chr1:94578622:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0917	0.0229	AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+,ABCA4->ATP_binding_cassette_subfamily_A_member_4,chr1:94458393-94586688:-	HCC1833_LUNG	0.83	1	0.1146	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	RP11-120D5.1--MID1	8	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	1	0.91	0.91	0.0917	0.0229	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC1833_LUNG	0.91	0.91	0.1146	FALSE	16	356	14	466	0	FALSE	ACH-000712
HCC1833_LUNG	ATF6--PBX1	6	6	ATF6	6169	chr1:161761945:+	PBX1	69230	chr1:164818577:+	INCL_NON_REF_SPLICE	YES	106	201	0.1	0.06	0.0688	0.0688	ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	HCC1833_LUNG	0.06	0.1	0.1376	TRUE	0	0	0	1	0	FALSE	ACH-000712
HCC1833_LUNG	RP11-319G9.5--WWOX	7	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	25	1	0.24	0.0803	0.0115	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	HCC1833_LUNG	0.24	1	0.0918	FALSE	154	425	28	76	0	FALSE	ACH-000712
HCC1833_LUNG	CYB561A3--CXCL16	6	4	CYB561A3	10580	chr11:61119919:-	CXCL16	22184	chr17:4637289:-	INCL_NON_REF_SPLICE	NO	65	217	0.13	0.04	0.0688	0.0459	GTEx&tcga_normals:41/3694=1.11%,GTEx_FI:{Lung=[count:16=pct:9.6],Blood=[count:10=pct:5.7],Spleen=[count:10=pct:8.9],Whole_Blood=[count:8=pct:6.1],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Liver=[count:2=pct:1.7],Breast=[count:2=pct:1.8],Esophagus=[count:2=pct:0.5],Stomach=[count:1=pct:1.1],Salivary_Gland=[count:1=pct:2.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=17;pct=0.20%;dist=Whole_Blood=5,Lung=4,Spleen=4,Artery_-_Aorta=1,Brain_-_Hippocampus=1,Artery_-_Coronary=1,Liver=1},CYB561A3->chr11:61116217-61129771:-,cytochrome_b561_family_member_A3,CXCL16->C-X-C_motif_chemokine_ligand_16,chr17:4636821-4643217:-	HCC1833_LUNG	0.04	0.13	0.1147	TRUE	1	3	1	1	2	FALSE	ACH-000712
HCC1833_LUNG	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0803	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1833_LUNG	1	1	0.0803	FALSE	292	1546	117	613	0	FALSE	ACH-000712
HCC1833_LUNG	PLXDC1--TAF13	7	0	PLXDC1	27520	chr17:37222840:-	TAF13	38540	chr1:109605627:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCC1833_LUNG	1	1	0.0803	TRUE	7	10	0	216	0	FALSE	ACH-000712
HCC1833_LUNG	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0688	0.0344	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1833_LUNG	1	1	0.1032	FALSE	462	80	0	856	0	FALSE	ACH-000712
HCC1833_LUNG	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	99	1	0.07	0.0688	0.0115	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1833_LUNG	0.07	1	0.0803	TRUE	465	1949	224	605	0	FALSE	ACH-000712
HCC1833_LUNG	RP11-96H19.1--RP11-446N19.1	6	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	1	0.7	0.88	0.0688	0.0115	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1833_LUNG	0.7	0.88	0.0803	FALSE	515	4851	409	746	0	FALSE	ACH-000712
HCC1833_LUNG	PCAT1--RP11-382A18.2	6	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0688	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	HCC1833_LUNG	1	1	0.0688	TRUE	4	84	1	46	0	FALSE	ACH-000712
HCC1833_LUNG	RABEP2--KCNB2	3	11	RABEP2	3525	chr16:28935812:-	KCNB2	22151	chr8:73848170:+	INCL_NON_REF_SPLICE	YES	202	46	0.06	0.23	0.0344	0.1261	RABEP2->chr16:28915742-28947847:-,rabaptin,_RAB_GTPase_binding_effector_protein_2,KCNB2->chr8:73449626-73850584:+,potassium_voltage-gated_channel_subfamily_B_member_2	HCC1833_LUNG	0.06	0.23	0.1605	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	ITPR2--SSPN	1	18	ITPR2	10193	chr12:26864106:-	SSPN	70196	chr12:26332929:+	ONLY_REF_SPLICE	YES	12	0	0.61	1	0.0115	0.2064	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_INVERSION:-:+:[38119],ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	HCC1833_LUNG	0.61	1	0.2179	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	KIAA0556--SH2B1	5	2	KIAA0556	2101	chr16:27585277:+	SH2B1	51352	chr16:28883101:+	ONLY_REF_SPLICE	YES	0	145	1	0.05	0.0573	0.0229	KIAA0556->KIAA0556,chr16:27561454-27791690:+,SH2B1->SH2B_adaptor_protein_1,chr16:28857921-28885526:+	HCC1833_LUNG	0.05	1	0.0802	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	RP11-640M9.1--SEC22B	5	2	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	YES	41	305	0.15	0.02	0.0573	0.0229	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HCC1833_LUNG	0.02	0.15	0.0802	TRUE	20	16	6	14	0	FALSE	ACH-000712
HCC1833_LUNG	ABCD3--SORT1	5	0	ABCD3	21961	chr1:94972198:+	SORT1	51257	chr1:109860591:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0573	0	ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+,SORT1->chr1:109852192-109940573:-,sortilin_1	HCC1833_LUNG	1	1	0.0573	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0573	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1833_LUNG	1	1	0.0573	FALSE	499	1288	110	792	0	FALSE	ACH-000712
HCC1833_LUNG	KIAA0556--SH2B1	4	2	KIAA0556	2101	chr16:27585277:+	SH2B1	51762	chr16:28883511:+	ONLY_REF_SPLICE	YES	0	148	1	0.04	0.0459	0.0229	KIAA0556->KIAA0556,chr16:27561454-27791690:+,SH2B1->SH2B_adaptor_protein_1,chr16:28857921-28885526:+	HCC1833_LUNG	0.04	1	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	22	1	0.21	0.0459	0.0229	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1833_LUNG	0.21	1	0.0688	TRUE	458	1351	185	561	0	FALSE	ACH-000712
HCC1833_LUNG	CCDC18--LUZP2	4	1	CCDC18	1361	chr1:93645836:+	LUZP2	53730	chr11:25098875:+	ONLY_REF_SPLICE	YES	88	0	0.05	1	0.0459	0.0115	CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18,LUZP2->chr11:24518516-25104150:+,leucine_zipper_protein_2	HCC1833_LUNG	0.05	1	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.0459	0.0115	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1833_LUNG	0.62	1	0.0574	FALSE	407	2205	196	549	0	FALSE	ACH-000712
HCC1833_LUNG	KIAA0556--ATP2A1	4	0	KIAA0556	2101	chr16:27585277:+	ATP2A1	45602	chr16:28893772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0459	0	KIAA0556->KIAA0556,chr16:27561454-27791690:+,ATP2A1->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_1,chr16:28889726-28915830:+	HCC1833_LUNG	1	1	0.0459	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1833_LUNG	1	1	0.0459	FALSE	499	1288	110	792	0	FALSE	ACH-000712
HCC1833_LUNG	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1833_LUNG	1	1	0.0459	FALSE	462	80	0	856	0	FALSE	ACH-000712
HCC1833_LUNG	RP11-114H23.1--RP11-114H23.2	4	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC1833_LUNG	1	1	0.0459	FALSE	81	155	12	160	0	FALSE	ACH-000712
HCC1833_LUNG	AP001347.6--ANKRD20A11P	3	3	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	13921	chr21:15342431:-	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0344	0.0344	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	HCC1833_LUNG	0.86	1	0.0688	TRUE	0	1	0	4	1	TRUE	ACH-000712
HCC1833_LUNG	KIAA0556--SH2B1	3	3	KIAA0556	2101	chr16:27585277:+	SH2B1	50153	chr16:28880506:+	INCL_NON_REF_SPLICE	YES	0	151	1	0.04	0.0344	0.0344	KIAA0556->KIAA0556,chr16:27561454-27791690:+,SH2B1->SH2B_adaptor_protein_1,chr16:28857921-28885526:+	HCC1833_LUNG	0.04	1	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	KIAA0556--SH2B1	2	7	KIAA0556	3517	chr16:27629822:+	SH2B1	49974	chr16:28880327:+	ONLY_REF_SPLICE	YES	22	148	0.29	0.06	0.0229	0.0803	KIAA0556->KIAA0556,chr16:27561454-27791690:+,SH2B1->SH2B_adaptor_protein_1,chr16:28857921-28885526:+	HCC1833_LUNG	0.06	0.29	0.1032	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	RP11-640M9.1--SEC22B	3	2	RP11-640M9.1	3158	chr1:144519813:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	YES	64	305	0.07	0.02	0.0344	0.0229	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HCC1833_LUNG	0.02	0.07	0.0573	TRUE	20	16	6	14	0	FALSE	ACH-000712
HCC1833_LUNG	RP11-640M9.1--SEC22B	3	2	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	25754	chr1:145103908:+	ONLY_REF_SPLICE	YES	41	336	0.11	0.01	0.0344	0.0229	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HCC1833_LUNG	0.01	0.11	0.0573	FALSE	14	18	7	11	0	FALSE	ACH-000712
HCC1833_LUNG	MT-ND6--MT-TE	3	1	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0.0115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1833_LUNG	1	1	0.0459	FALSE	499	1288	110	792	0	FALSE	ACH-000712
HCC1833_LUNG	ABI2--CD28	3	0	ABI2	5910	chr2:204231767:+	CD28	45886	chr2:204591356:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0344	0	ABI2->abl-interactor_2,chr2:204192942-204312446:+,CD28->CD28_molecule,chr2:204571198-204603635:+	HCC1833_LUNG	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	NRIP1--AF127936.7	3	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0344	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1833_LUNG	1	1	0.0344	FALSE	164	806	69	479	0	FALSE	ACH-000712
HCC1833_LUNG	RP11-435B5.4--MLLT10P1	3	0	RP11-435B5.4	2850	chr1:143465373:-	MLLT10P1	19611	chr20:29638047:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	RP11-435B5.4->chr1:143354963-143467632:-,MLLT10P1->chr20:29637799-29638060:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10_pseudogene_1	HCC1833_LUNG	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	TAOK2--ABCA4	3	0	TAOK2	1286	chr16:29985247:+	ABCA4	63357	chr1:94476485:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	TAOK2->TAO_kinase_2,chr16:29984962-30003582:+,ABCA4->ATP_binding_cassette_subfamily_A_member_4,chr1:94458393-94586688:-	HCC1833_LUNG	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	RP11-640M9.1--SEC22B	2	3	RP11-640M9.1	3158	chr1:144519813:-	SEC22B	24461	chr1:145100692:+	ONLY_REF_SPLICE	YES	64	393	0.07	0.01	0.0229	0.0344	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HCC1833_LUNG	0.01	0.07	0.0573	FALSE	0	0	0	1	0	FALSE	ACH-000712
HCC1833_LUNG	CCDC18--LUZP2	2	1	CCDC18	1500	chr1:93645975:+	LUZP2	53730	chr11:25098875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0.0115	CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18,LUZP2->chr11:24518516-25104150:+,leucine_zipper_protein_2	HCC1833_LUNG	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	HSF1--KM-PA-2	2	1	HSF1	1277	chr8:145515556:+	KM-PA-2	13833	chr8:145319974:-	ONLY_REF_SPLICE	YES	83	0	0.03	1	0.0229	0.0115	HSF1->chr8:145515280-145538385:+,heat_shock_transcription_factor_1,KM-PA-2->chr8:145317003-145331153:-	HCC1833_LUNG	0.03	1	0.0344	TRUE	0	0	0	1	0	FALSE	ACH-000712
HCC1833_LUNG	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	3	0	0.5	1	0.0229	0.0115	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1833_LUNG	0.5	1	0.0344	FALSE	275	511	55	178	0	FALSE	ACH-000712
HCC1833_LUNG	CCDC18--LUZP2	1	4	CCDC18	1964	chr1:93646439:+	LUZP2	53730	chr11:25098875:+	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.0115	0.0459	CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18,LUZP2->chr11:24518516-25104150:+,leucine_zipper_protein_2	HCC1833_LUNG	0.62	1	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	FRYL--DHX15	2	0	FRYL	1245	chr4:48782095:-	DHX15	85535	chr4:24578301:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,DHX15->DEAH-box_helicase_15,chr4:24519064-24586173:-	HCC1833_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	HLA-F-AS1--HLA-H	2	0	HLA-F-AS1	5604	chr6:29705743:-	HLA-H	16904	chr6:29858041:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	HLA-F-AS1->HLA-F_antisense_RNA_1,chr6:29694378-29716826:-,HLA-H->chr6:29855350-29858259:+,major_histocompatibility_complex,_class_I,_H_(pseudogene)	HCC1833_LUNG	1	1	0.0229	FALSE	0	0	0	1	0	FALSE	ACH-000712
HCC1833_LUNG	ING5--ATG4B	2	0	ING5	2140	chr2:242644139:+	ATG4B	24618	chr2:242593961:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LOCAL_REARRANGEMENT:+:[28178],ING5->chr2:242641450-242668893:+,inhibitor_of_growth_family_member_5,ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+	HCC1833_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	MFSD8--LARP1B	2	0	MFSD8	1924	chr4:128886227:-	LARP1B	37909	chr4:129120594:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LOCAL_INVERSION:-:+:[95273],MFSD8->chr4:128838960-128887150:-,major_facilitator_superfamily_domain_containing_8,LARP1B->La_ribonucleoprotein_domain_family_member_1B,chr4:128982423-129144086:+	HCC1833_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1833_LUNG	1	1	0.0229	FALSE	125	705	46	456	0	FALSE	ACH-000712
HCC1833_LUNG	SETD5--UBE2E1	2	0	SETD5	1363	chr3:9439661:+	UBE2E1	44312	chr3:23929058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	SETD5->SET_domain_containing_5,chr3:9439299-9520924:+,UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1	HCC1833_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	SF1--FUS	2	0	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	HCC1833_LUNG	1	1	0.0229	TRUE	5	20	0	32	0	FALSE	ACH-000712
HCC1833_LUNG	SPIN1--ESRRA	2	0	SPIN1	1120	chr9:91003453:+	ESRRA	19287	chr11:64074640:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	SPIN1->chr9:91003334-91093609:+,spindlin_1,ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha	HCC1833_LUNG	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	TIMM23B--LINC00843	2	0	TIMM23B	5839	chr10:51384357:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1833_LUNG	1	1	0.0229	TRUE	1	0	0	2	0	FALSE	ACH-000712
HCC1833_LUNG	RP11-640M9.1--SEC22B	1	3	RP11-640M9.1	3158	chr1:144519813:-	SEC22B	25754	chr1:145103908:+	ONLY_REF_SPLICE	NO	64	336	0.06	0.01	0.0115	0.0344	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HCC1833_LUNG	0.01	0.06	0.0459	FALSE	14	18	7	11	0	FALSE	ACH-000712
HCC1833_LUNG	AP001347.6--ANKRD20A11P	1	2	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	19348	chr21:15326471:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0115	0.0229	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	HCC1833_LUNG	0.75	1	0.0344	TRUE	0	1	0	3	1	TRUE	ACH-000712
HCC1833_LUNG	HSPA5--GNAS	1	2	HSPA5	1655	chr9:128002955:-	GNAS	32119	chr20:57478796:+	ONLY_REF_SPLICE	YES	621	1378	0	0	0.0115	0.0229	HSPA5->Oncogene{Bushman},chr9:127997132-128003609:-,heat_shock_protein_family_A_(Hsp70)_member_5,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HCC1833_LUNG	0	0	0.0344	FALSE	0	0	0	2	0	FALSE	ACH-000712
HCC1833_LUNG	KANSL1--ARL17B	1	2	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	20	14	0.13	0.18	0.0115	0.0229	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC1833_LUNG	0.13	0.18	0.0344	TRUE	105	90	7	93	0	FALSE	ACH-000712
HCC1833_LUNG	RABEP2--KCNB2	1	2	RABEP2	2913	chr16:28936424:-	KCNB2	22151	chr8:73848170:+	ONLY_REF_SPLICE	YES	65	46	0.04	0.06	0.0115	0.0229	RABEP2->chr16:28915742-28947847:-,rabaptin,_RAB_GTPase_binding_effector_protein_2,KCNB2->chr8:73449626-73850584:+,potassium_voltage-gated_channel_subfamily_B_member_2	HCC1833_LUNG	0.04	0.06	0.0344	TRUE	0	0	0	1	0	FALSE	ACH-000712
HCC1833_LUNG	TAOK2--ABCA4	1	2	TAOK2	2008	chr16:29985969:+	ABCA4	64487	chr1:94474427:-	ONLY_REF_SPLICE	YES	153	57	0.02	0.05	0.0115	0.0229	TAOK2->TAO_kinase_2,chr16:29984962-30003582:+,ABCA4->ATP_binding_cassette_subfamily_A_member_4,chr1:94458393-94586688:-	HCC1833_LUNG	0.02	0.05	0.0344	TRUE	0	0	0	1	0	FALSE	ACH-000712
HCC1833_LUNG	AP001347.6--ANKRD20A11P	1	1	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	20433	chr21:15323581:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0115	0.0115	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	HCC1833_LUNG	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000712
HCC1833_LUNG	CALM3--CALR	1	1	CALM3	6343	chr19:47111845:+	CALR	13214	chr19:13051057:+	ONLY_REF_SPLICE	YES	720	1918	0	0	0.0115	0.0115	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,CALR->calreticulin,chr19:13049392-13055303:+	HCC1833_LUNG	0	0	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000712
HCC1833_LUNG	CPSF6--CNOT2	1	1	CPSF6	1170	chr12:69633486:+	CNOT2	31913	chr12:70713078:+	ONLY_REF_SPLICE	YES	60	70	0.03	0.03	0.0115	0.0115	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+	HCC1833_LUNG	0.03	0.03	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000712
HCC1833_LUNG	CTD-2152M20.2--GOLPH3	1	1	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	NO	0	59	1	0.03	0.0115	0.0115	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	HCC1833_LUNG	0.03	1	0.023	TRUE	10	26	2	24	0	FALSE	ACH-000712
HCC1833_LUNG	FNBP1L--ABCD3	1	1	FNBP1L	1175	chr1:93913862:+	ABCD3	27651	chr1:94924163:+	ONLY_REF_SPLICE	YES	709	969	0	0	0.0115	0.0115	FNBP1L->chr1:93913688-94020218:+,formin_binding_protein_1_like,ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+	HCC1833_LUNG	0	0	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000712
HCC1833_LUNG	LDLRAD4--PTPN2	1	1	LDLRAD4	6361	chr18:13387761:+	PTPN2	39645	chr18:12859253:-	ONLY_REF_SPLICE	YES	30	120	0.06	0.02	0.0115	0.0115	LDLRAD4->chr18:13217497-13652754:+,low_density_lipoprotein_receptor_class_A_domain_containing_4,PTPN2->chr18:12785477-12929642:-,protein_tyrosine_phosphatase,_non-receptor_type_2	HCC1833_LUNG	0.02	0.06	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000712
HCC1833_LUNG	LINC01014--KCNMB2	1	1	LINC01014	1175	chr3:178137163:+	KCNMB2	14218	chr3:178543376:+	ONLY_REF_SPLICE	YES	3	5	0.4	0.29	0.0115	0.0115	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	HCC1833_LUNG	0.29	0.4	0.023	FALSE	0	2	0	4	0	FALSE	ACH-000712
HCC1833_LUNG	MTMR2--CEP57	1	1	MTMR2	2441	chr11:95657039:-	CEP57	31194	chr11:95532396:+	ONLY_REF_SPLICE	YES	61	91	0.03	0.02	0.0115	0.0115	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},LOCAL_INVERSION:-:+:[189],MTMR2->chr11:95566046-95658479:-,myotubularin_related_protein_2,CEP57->centrosomal_protein_57,chr11:95523129-95565857:+	HCC1833_LUNG	0.02	0.03	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000712
HCC1833_LUNG	NOC4L--FBRSL1	1	1	NOC4L	2218	chr12:132630210:+	FBRSL1	23658	chr12:133144067:+	ONLY_REF_SPLICE	YES	55	53	0.04	0.04	0.0115	0.0115	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	HCC1833_LUNG	0.04	0.04	0.023	TRUE	2	2	0	6	0	FALSE	ACH-000712
HCC1833_LUNG	POLR2J3--ABCD3	1	1	POLR2J3	3024	chr7:102210282:-	ABCD3	22319	chr1:94924163:+	ONLY_REF_SPLICE	YES	90	969	0.02	0	0.0115	0.0115	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+	HCC1833_LUNG	0	0.02	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000712
HCC1833_LUNG	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	1	1	0.67	0.0115	0.0115	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1833_LUNG	0.67	1	0.023	FALSE	467	2173	244	435	0	FALSE	ACH-000712
HCC1833_LUNG	SDF4--NOC4L	1	1	SDF4	5392	chr1:1158624:-	NOC4L	19434	chr12:132635526:+	ONLY_REF_SPLICE	YES	309	40	0.01	0.05	0.0115	0.0115	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	HCC1833_LUNG	0.01	0.05	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000712
HCC1833_LUNG	SERBP1--ZRANB2	1	1	SERBP1	3131	chr1:67891818:-	ZRANB2	25691	chr1:71532617:-	ONLY_REF_SPLICE	YES	686	99	0	0.02	0.0115	0.0115	SERBP1->SERPINE1_mRNA_binding_protein_1,chr1:67873493-67896098:-,ZRANB2->chr1:71528974-71546980:-,zinc_finger_RANBP2-type_containing_2	HCC1833_LUNG	0	0.02	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000712
HCC1833_LUNG	SNX13--BMPER	1	1	SNX13	1218	chr7:17979907:-	BMPER	51508	chr7:34006091:+	ONLY_REF_SPLICE	YES	33	2	0.06	0.5	0.0115	0.0115	SNX13->chr7:17830385-17980124:-,sorting_nexin_13,BMPER->BMP_binding_endothelial_regulator,chr7:33944523-34195484:+	HCC1833_LUNG	0.06	0.5	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000712
NCIH2444_LUNG	MT-TA--MT-TN	142	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2965	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2444_LUNG	1	1	1.2965	FALSE	369	2501	205	193	0	FALSE	ACH-000186
NCIH2444_LUNG	LINC00152--AC093616.4	112	18	LINC00152	14196	chr2:87906288:+	AC093616.4	17233	chr2:88000503:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0226	0.1644	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	NCIH2444_LUNG	1	1	1.187	FALSE	0	0	0	14	0	FALSE	ACH-000186
NCIH2444_LUNG	HSPBP1--GRK5	92	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.84	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH2444_LUNG	1	1	0.84	TRUE	1	39	0	134	39	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND6--MT-TE	85	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.7761	0.0548	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2444_LUNG	0.99	1	0.8309	FALSE	499	1288	110	792	0	FALSE	ACH-000186
NCIH2444_LUNG	TIMM23B--LINC00843	56	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5113	0.137	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2444_LUNG	1	1	0.6483	TRUE	508	994	45	981	0	FALSE	ACH-000186
NCIH2444_LUNG	NRIP1--AF127936.7	59	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.5387	0.0183	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2444_LUNG	0.98	1	0.557	FALSE	292	1546	117	613	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	7	209	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	15	0	0.94	1	0.0639	1.9083	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	0.94	1	1.9722	FALSE	344	826	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	3	210	MT-ND4	1519	chrM:11278:+	MT-ND4L	5394	chrM:10485:+	INCL_NON_REF_SPLICE	YES	381	0	0.36	1	0.0274	1.9174	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	0.36	1	1.9448	FALSE	344	827	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	3	208	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	10	2	0.95	0.99	0.0274	1.8992	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	0.95	0.99	1.9266	FALSE	344	826	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-TA--MT-TC	52	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4748	0.0457	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2444_LUNG	1	1	0.5205	FALSE	462	80	0	856	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	15	149	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	4115	2	0.04	0.99	0.137	1.3605	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	0.04	0.99	1.4975	FALSE	344	827	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	5	171	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	8	2	0.96	0.99	0.0457	1.5613	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	0.96	0.99	1.607	FALSE	344	826	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND6--MT-TE	36	23	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.3287	0.21	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2444_LUNG	0.97	1	0.5387	FALSE	499	1288	110	792	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	5	145	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	2	0.96	0.99	0.0457	1.3239	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	0.96	0.99	1.3696	FALSE	344	821	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	22	53	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	10117	1	0.01	0.99	0.2009	0.4839	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	0.01	0.99	0.6848	FALSE	328	800	43	304	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	3	129	MT-ND4	1170	chrM:10929:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	19	2	0.87	0.99	0.0274	1.1778	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	0.87	0.99	1.2052	FALSE	344	826	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-CO2--MT-CO1	29	16	MT-CO2	1249	chrM:7834:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	53	16614	0.46	0	0.2648	0.1461	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2444_LUNG	0	0.46	0.4109	FALSE	36	10	0	27	0	FALSE	ACH-000186
NCIH2444_LUNG	ZNF654--HMGB2	33	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3013	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2444_LUNG	1	1	0.3013	TRUE	0	0	0	518	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-TA--MT-TN	12	74	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1096	0.6757	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2444_LUNG	1	1	0.7853	FALSE	369	2501	205	193	0	FALSE	ACH-000186
NCIH2444_LUNG	TIMM23--RP11-464F9.1	30	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2739	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2444_LUNG	1	1	0.2739	TRUE	519	3926	326	965	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ATP6--MT-CO2	29	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	63	15	0.34	0.68	0.2648	0.0274	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2444_LUNG	0.34	0.68	0.2922	FALSE	59	21	0	114	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND6--MT-TE	28	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2557	0.0548	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2444_LUNG	0.97	1	0.3105	FALSE	499	1288	110	792	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-TA--MT-TN	18	44	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1644	0.4017	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2444_LUNG	1	1	0.5661	FALSE	369	2501	205	193	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-TA--MT-TN	23	24	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.21	0.2191	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2444_LUNG	1	1	0.4291	FALSE	369	2501	205	193	0	FALSE	ACH-000186
NCIH2444_LUNG	RP11-96H19.1--RP11-446N19.1	23	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.96	0.96	0.21	0.0274	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2444_LUNG	0.96	0.96	0.2374	FALSE	515	4851	409	746	0	FALSE	ACH-000186
NCIH2444_LUNG	MAP3K1--ABLIM3	22	4	MAP3K1	9453	chr5:56171137:+	ABLIM3	27052	chr5:148563015:+	ONLY_REF_SPLICE	YES	12	25	0.68	0.51	0.2009	0.0365	MAP3K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:56111401-56191979:+,mitogen-activated_protein_kinase_kinase_kinase_1,ABLIM3->actin_binding_LIM_protein_family_member_3,chr5:148521046-148640105:+	NCIH2444_LUNG	0.51	0.68	0.2374	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	13	38	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	220	1	0.19	0.98	0.1187	0.347	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	0.19	0.98	0.4657	FALSE	344	827	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-TA--MT-TN	22	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2009	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2444_LUNG	1	1	0.2009	FALSE	369	2501	205	193	0	FALSE	ACH-000186
NCIH2444_LUNG	PDE4D--POU4F3	20	3	PDE4D	39303	chr5:58334686:-	POU4F3	58579	chr5:145718666:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1826	0.0274	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,POU4F3->POU_class_4_homeobox_3,chr5:145718587-145720083:+	NCIH2444_LUNG	1	1	0.21	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	MT-CO2--MT-CO1	11	38	MT-CO2	1345	chrM:7930:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	17	14875	0.74	0	0.1004	0.347	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2444_LUNG	0	0.74	0.4474	FALSE	36	10	0	27	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	7	53	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	381	1	0.14	0.98	0.0639	0.4839	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	0.14	0.98	0.5478	FALSE	344	827	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-TA--MT-TN	5	58	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0.5296	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2444_LUNG	1	1	0.5753	FALSE	369	2501	205	193	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-TA--MT-TN	13	24	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1187	0.2191	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2444_LUNG	1	1	0.3378	FALSE	369	2501	205	193	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND6--MT-TE	9	38	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.0822	0.347	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2444_LUNG	0.96	1	0.4292	FALSE	499	1288	110	792	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	5	53	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	20	1	0.74	0.98	0.0457	0.4839	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	0.74	0.98	0.5296	FALSE	344	826	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	NRIP1--AF127936.7	15	10	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.71	1	0.137	0.0913	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2444_LUNG	0.71	1	0.2283	FALSE	164	806	69	479	0	FALSE	ACH-000186
NCIH2444_LUNG	NRIP1--AF127936.7	17	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.46	1	0.1552	0.0183	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2444_LUNG	0.46	1	0.1735	FALSE	125	705	46	456	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	17	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1552	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	1	1	0.1552	FALSE	230	193	14	283	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-TA--MT-TN	6	43	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0.3926	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2444_LUNG	1	1	0.4474	FALSE	369	2501	205	193	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-CO2--MT-CO1	3	52	MT-CO2	1463	chrM:8048:+	MT-CO1	5176	chrM:6395:+	INCL_NON_REF_SPLICE	NO	12	14539	0.82	0	0.0274	0.4748	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2444_LUNG	0	0.82	0.5022	FALSE	36	10	0	27	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND5--MT-ND6	16	0	MT-ND5	2795	chrM:14131:+	MT-ND6	6322	chrM:14164:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1461	0	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH2444_LUNG	1	1	0.1461	FALSE	26	124	4	93	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	6	38	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	22	1	0.67	0.98	0.0548	0.347	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	0.67	0.98	0.4018	FALSE	344	826	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	PPP2R4--NUP188	12	12	PPP2R4	16381	chr9:131904831:+	NUP188	30497	chr9:131730785:+	ONLY_REF_SPLICE	YES	207	24	0.1	0.5	0.1096	0.1096	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,NUP188->chr9:131709978-131769375:+,nucleoporin_188kDa	NCIH2444_LUNG	0.1	0.5	0.2192	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	MT-ATP6--MT-CO2	14	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	56	13	0.22	0.55	0.1278	0.0183	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2444_LUNG	0.22	0.55	0.1461	FALSE	59	21	0	114	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-CO2--MT-CO1	5	37	MT-CO2	1489	chrM:8074:+	MT-CO1	5621	chrM:6840:+	INCL_NON_REF_SPLICE	YES	8	6401	0.84	0.01	0.0457	0.3378	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2444_LUNG	0.01	0.84	0.3835	FALSE	36	10	0	27	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-CO2--MT-CO1	7	28	MT-CO2	1282	chrM:7867:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	36	14875	0.49	0	0.0639	0.2557	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2444_LUNG	0	0.49	0.3196	FALSE	36	10	0	27	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	12	5	MT-ND4	2283	chrM:12042:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	32	50	0.35	0.25	0.1096	0.0457	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	0.25	0.35	0.1553	FALSE	213	207	15	279	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	5	33	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	21	2	0.64	0.95	0.0457	0.3013	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	0.64	0.95	0.347	FALSE	344	826	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ATP6--MT-CO2	12	2	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	67	13	0.17	0.52	0.1096	0.0183	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2444_LUNG	0.17	0.52	0.1279	FALSE	59	21	0	114	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-CO2--MT-CO1	4	34	MT-CO2	1359	chrM:7944:+	MT-CO1	5335	chrM:6554:+	INCL_NON_REF_SPLICE	YES	10	16853	0.79	0	0.0365	0.3104	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2444_LUNG	0	0.79	0.3469	FALSE	36	10	0	27	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	5	28	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	6	2	0.85	0.94	0.0457	0.2557	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	0.85	0.94	0.3014	FALSE	344	821	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-TA--MT-TC	11	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1004	0.0274	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2444_LUNG	1	1	0.1278	FALSE	462	80	0	856	0	FALSE	ACH-000186
NCIH2444_LUNG	RP11-123O10.4--GRIP1	11	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1004	0.0274	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2444_LUNG	1	1	0.1278	FALSE	416	2512	207	587	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND6--MT-TE	5	25	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0457	0.2283	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2444_LUNG	0.97	1	0.274	FALSE	499	1288	110	792	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	6	20	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	22	1	0.54	0.96	0.0548	0.1826	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	0.54	0.96	0.2374	FALSE	344	826	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-CO2--MT-CO1	3	29	MT-CO2	1320	chrM:7905:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	25	16614	0.56	0	0.0274	0.2648	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2444_LUNG	0	0.56	0.2922	FALSE	36	10	0	27	0	FALSE	ACH-000186
NCIH2444_LUNG	SETD3--AL109767.1	10	1	SETD3	7443	chr14:99924616:-	AL109767.1	23438	chr14:99730475:+	ONLY_REF_SPLICE	YES	129	0	0.08	1	0.0913	0.0091	SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,AL109767.1->chr14:99729285-99731072:+	NCIH2444_LUNG	0.08	1	0.1004	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	CTD-2337A12.1--CAST	10	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0913	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH2444_LUNG	1	1	0.0913	TRUE	347	1186	183	220	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	5	20	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	42	1	0.37	0.96	0.0457	0.1826	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	0.37	0.96	0.2283	FALSE	344	827	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-TA--MT-TN	10	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0913	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2444_LUNG	1	1	0.0913	FALSE	369	2501	205	193	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	8	4	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11729	50	0	0.19	0.073	0.0365	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	0	0.19	0.1095	FALSE	231	217	16	283	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ATP6--MT-CO2	8	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	63	12	0.15	0.48	0.073	0.0274	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2444_LUNG	0.15	0.48	0.1004	FALSE	59	21	0	114	0	FALSE	ACH-000186
NCIH2444_LUNG	CCDC122--ENOX1	8	2	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	7	0	0.59	1	0.073	0.0183	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	NCIH2444_LUNG	0.59	1	0.0913	FALSE	39	52	2	34	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-CO2--MT-CO1	3	22	MT-CO2	1222	chrM:7807:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	52	14875	0.32	0	0.0274	0.2009	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2444_LUNG	0	0.32	0.2283	FALSE	36	10	0	27	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND6--MT-TE	6	10	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	3	0	0.84	1	0.0548	0.0913	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2444_LUNG	0.84	1	0.1461	FALSE	499	1288	110	792	0	FALSE	ACH-000186
NCIH2444_LUNG	SUPT3H--BAI3	8	1	SUPT3H	2744	chr6:45332938:-	BAI3	26721	chr6:69640451:+	ONLY_REF_SPLICE	YES	42	1	0.18	0.9	0.073	0.0091	SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,BAI3->chr6:69345259-70099403:+	NCIH2444_LUNG	0.18	0.9	0.0821	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	MT-CO2--MT-CO1	3	20	MT-CO2	1278	chrM:7863:+	MT-CO1	5338	chrM:6557:+	INCL_NON_REF_SPLICE	YES	36	16996	0.39	0	0.0274	0.1826	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2444_LUNG	0	0.39	0.21	FALSE	36	10	0	27	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	1	1	0.073	FALSE	230	198	14	283	0	FALSE	ACH-000186
NCIH2444_LUNG	RP11-59N23.1--CMAS	7	2	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	2	145	0.82	0.06	0.0639	0.0183	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH2444_LUNG	0.06	0.82	0.0822	TRUE	21	102	17	28	0	FALSE	ACH-000186
NCIH2444_LUNG	IGFBP4--NPM1	7	1	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	1230	0	0.01	1	0.0639	0.0091	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	NCIH2444_LUNG	0.01	1	0.073	FALSE	0	0	0	38	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-CO2--MT-CO1	3	16	MT-CO2	1222	chrM:7807:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	52	16614	0.27	0	0.0274	0.1461	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2444_LUNG	0	0.27	0.1735	FALSE	36	10	0	27	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND3--MT-ATP8	7	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	1	1	0.0639	FALSE	351	233	23	137	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND6--MT-TE	7	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2444_LUNG	1	1	0.0639	FALSE	499	1288	110	792	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2444_LUNG	1	1	0.0639	FALSE	462	80	0	856	0	FALSE	ACH-000186
NCIH2444_LUNG	LINC00152--AC093616.4	6	3	LINC00152	1278	chr2:87755164:+	AC093616.4	17233	chr2:88000503:+	ONLY_REF_SPLICE	YES	364	0	0.02	1	0.0548	0.0274	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	NCIH2444_LUNG	0.02	1	0.0822	FALSE	0	0	0	11	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	6	3	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	9798	0	0	1	0.0548	0.0274	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	0	1	0.0822	FALSE	231	217	16	283	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ATP6--MT-CO2	3	14	MT-ATP6	1591	chrM:9117:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	0	15	1	0.53	0.0274	0.1278	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2444_LUNG	0.53	1	0.1552	FALSE	59	21	0	114	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND5--MT-ND6	6	2	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	2884	1	0	0.0548	0.0183	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH2444_LUNG	0	1	0.0731	FALSE	26	124	4	93	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	5	5	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2231	50	0	0.17	0.0457	0.0457	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	0	0.17	0.0914	FALSE	216	209	16	281	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	6	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	1	1	0.0548	FALSE	230	198	14	283	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	5	4	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	11729	190	0	0.05	0.0457	0.0365	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	0	0.05	0.0822	FALSE	231	217	16	283	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1014	chrM:14660:-	MT-TE	4552	chrM:14716:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2444_LUNG	1	1	0.0548	FALSE	499	1288	110	792	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2444_LUNG	1	1	0.0548	FALSE	499	1288	110	792	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2444_LUNG	1	1	0.0548	FALSE	499	1288	110	792	0	FALSE	ACH-000186
NCIH2444_LUNG	RP11-120D5.1--MID1	5	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	5	0.73	0.62	0.0457	0.0274	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2444_LUNG	0.62	0.73	0.0731	FALSE	16	356	14	466	0	FALSE	ACH-000186
NCIH2444_LUNG	C15orf57--CBX3	5	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	15	25	0.32	0.22	0.0457	0.0183	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2444_LUNG	0.22	0.32	0.064	TRUE	267	562	48	632	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ATP6--MT-CO2	5	2	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	54	12	0.11	0.37	0.0457	0.0183	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2444_LUNG	0.11	0.37	0.064	FALSE	59	21	0	114	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-CO2--MT-CO1	5	2	MT-CO2	1320	chrM:7905:+	MT-CO1	5908	chrM:7127:+	INCL_NON_REF_SPLICE	YES	25	382	0.22	0.02	0.0457	0.0183	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2444_LUNG	0.02	0.22	0.064	FALSE	36	10	0	27	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	10896	877	0	0.01	0.0457	0.0183	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	0	0.01	0.064	FALSE	231	217	16	283	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10896	4	0	0.64	0.0457	0.0183	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	0	0.64	0.064	FALSE	231	217	16	283	0	FALSE	ACH-000186
NCIH2444_LUNG	GRB2--TSPAN12	5	1	GRB2	8512	chr17:73317740:-	TSPAN12	23341	chr7:120446746:-	ONLY_REF_SPLICE	YES	92	13	0.06	0.32	0.0457	0.0091	GRB2->Oncogene{Bushman},chr17:73314157-73401790:-,growth_factor_receptor_bound_protein_2,TSPAN12->chr7:120427376-120498456:-,tetraspanin_12	NCIH2444_LUNG	0.06	0.32	0.0548	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	RPSAP52--HMGA2	5	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	10	125	0.38	0.05	0.0457	0.0091	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	NCIH2444_LUNG	0.05	0.38	0.0548	FALSE	0	59	0	125	0	FALSE	ACH-000186
NCIH2444_LUNG	EIF1--RPS28	5	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH2444_LUNG	1	1	0.0457	TRUE	0	0	0	81	0	FALSE	ACH-000186
NCIH2444_LUNG	LARP1--ABLIM3	5	0	LARP1	19930	chr5:154191200:+	ABLIM3	36934	chr5:148610212:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0457	0	LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+,ABLIM3->actin_binding_LIM_protein_family_member_3,chr5:148521046-148640105:+	NCIH2444_LUNG	1	1	0.0457	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	4	4	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	12619	0	0	1	0.0365	0.0365	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	0	1	0.073	FALSE	231	217	16	283	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	1	1	0.0457	FALSE	344	821	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0457	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2444_LUNG	1	1	0.0457	TRUE	465	1949	224	605	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ATP6--MT-CO2	4	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	63	25	0.1	0.22	0.0365	0.0274	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2444_LUNG	0.1	0.22	0.0639	FALSE	59	21	0	114	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ATP6--MT-CO2	4	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	63	25	0.1	0.22	0.0365	0.0274	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2444_LUNG	0.1	0.22	0.0639	FALSE	59	21	0	114	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	4	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.78	0.0365	0.0274	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	0.78	1	0.0639	FALSE	344	821	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-TA--MT-TC	4	3	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0.0274	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2444_LUNG	1	1	0.0639	FALSE	462	80	0	856	0	FALSE	ACH-000186
NCIH2444_LUNG	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0365	0.0274	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2444_LUNG	0.88	1	0.0639	FALSE	407	2205	196	549	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-TA--MT-TC	3	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0.0548	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2444_LUNG	1	1	0.0822	FALSE	462	80	0	856	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1	4	0.89	0.67	0.0274	0.0457	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	0.67	0.89	0.0731	FALSE	209	205	15	279	0	FALSE	ACH-000186
NCIH2444_LUNG	LINC00152--AC093616.4	3	4	LINC00152	14196	chr2:87906288:+	AC093616.4	20662	chr2:88007281:+	INCL_NON_REF_SPLICE	YES	0	18	1	0.28	0.0274	0.0365	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	NCIH2444_LUNG	0.28	1	0.0639	FALSE	0	0	0	4	0	FALSE	ACH-000186
NCIH2444_LUNG	MIR205HG--C9orf3	4	0	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0365	0	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	NCIH2444_LUNG	1	1	0.0365	TRUE	86	303	14	25	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ATP6--MT-CO2	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2444_LUNG	1	1	0.0365	FALSE	59	21	0	114	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ATP6--MT-CO2	4	0	MT-ATP6	1072	chrM:8598:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2444_LUNG	1	1	0.0365	FALSE	59	21	0	114	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	1	1	0.0365	FALSE	231	205	14	283	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2444_LUNG	1	1	0.0365	FALSE	344	821	44	306	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2444_LUNG	1	1	0.0365	FALSE	499	1288	110	792	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2444_LUNG	1	1	0.0365	FALSE	499	1288	110	792	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2444_LUNG	1	1	0.0365	FALSE	499	1288	110	792	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-TA--MT-TN	4	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2444_LUNG	1	1	0.0365	FALSE	369	2501	205	193	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2444_LUNG	1	1	0.0365	FALSE	369	2501	205	193	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-CO2--MT-CO1	3	3	MT-CO2	1396	chrM:7981:+	MT-CO1	5912	chrM:7131:+	INCL_NON_REF_SPLICE	YES	11	362	0.35	0.02	0.0274	0.0274	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2444_LUNG	0.02	0.35	0.0548	FALSE	36	10	0	27	0	FALSE	ACH-000186
NCIH2444_LUNG	LINC00152--AC093616.4	3	2	LINC00152	14196	chr2:87906288:+	AC093616.4	21811	chr2:88012878:+	INCL_NON_REF_SPLICE	YES	0	36	1	0.12	0.0274	0.0183	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	NCIH2444_LUNG	0.12	1	0.0457	FALSE	0	0	0	1	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ATP6--MT-CO2	3	2	MT-ATP6	1123	chrM:8649:+	MT-CO2	4811	chrM:7715:+	INCL_NON_REF_SPLICE	YES	56	21	0.08	0.19	0.0274	0.0183	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2444_LUNG	0.08	0.19	0.0457	FALSE	59	21	0	114	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ATP6--MT-CO2	3	2	MT-ATP6	1135	chrM:8661:+	MT-CO2	4824	chrM:7728:+	INCL_NON_REF_SPLICE	YES	61	15	0.08	0.25	0.0274	0.0183	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2444_LUNG	0.08	0.25	0.0457	FALSE	59	21	0	114	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ATP6--MT-CO2	3	2	MT-ATP6	1143	chrM:8669:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	67	13	0.07	0.28	0.0274	0.0183	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2444_LUNG	0.07	0.28	0.0457	FALSE	59	21	0	114	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	10910	0	0	1	0.0274	0.0183	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	0	1	0.0457	FALSE	231	217	16	283	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11035	0	0	1	0.0274	0.0183	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	0	1	0.0457	FALSE	231	217	16	283	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND5--MT-ND6	3	2	MT-ND5	2769	chrM:14105:+	MT-ND6	5868	chrM:14618:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0.0183	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH2444_LUNG	1	1	0.0457	FALSE	26	124	4	93	0	FALSE	ACH-000186
NCIH2444_LUNG	RPL23AP79--SAMD12	3	2	RPL23AP79	2311	chr19:59086955:+	SAMD12	18562	chr8:119391939:-	ONLY_REF_SPLICE	YES	30	13	0.14	0.28	0.0274	0.0183	RPL23AP79->chr19:59084870-59111168:+,ribosomal_protein_L23a_pseudogene_79,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	NCIH2444_LUNG	0.14	0.28	0.0457	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	LINC00152--AC093616.4	1	9	LINC00152	11136	chr2:87882865:+	AC093616.4	17233	chr2:88000503:+	ONLY_REF_SPLICE	YES	77	0	0.11	1	0.0091	0.0822	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	NCIH2444_LUNG	0.11	1	0.0913	FALSE	0	0	0	2	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ATP6--MT-CO2	3	1	MT-ATP6	1118	chrM:8644:+	MT-CO2	4967	chrM:7871:+	INCL_NON_REF_SPLICE	YES	38	17	0.1	0.19	0.0274	0.0091	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2444_LUNG	0.1	0.19	0.0365	FALSE	59	21	0	114	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ATP6--MT-CO2	3	1	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	55	23	0.07	0.15	0.0274	0.0091	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2444_LUNG	0.07	0.15	0.0365	FALSE	59	21	0	114	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	10901	0	0	1	0.0274	0.0091	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	0	1	0.0365	FALSE	231	205	14	283	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND6--MT-TE	3	1	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0.0091	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2444_LUNG	1	1	0.0365	FALSE	499	1288	110	792	0	FALSE	ACH-000186
NCIH2444_LUNG	MB21D2--FGF12	3	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	NCIH2444_LUNG	1	1	0.0274	FALSE	0	17	0	46	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ATP6--MT-CO2	3	0	MT-ATP6	1051	chrM:8577:+	MT-CO2	4886	chrM:7790:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2444_LUNG	1	1	0.0274	FALSE	59	21	0	114	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ATP6--MT-CO2	3	0	MT-ATP6	1089	chrM:8615:+	MT-CO2	4955	chrM:7859:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2444_LUNG	1	1	0.0274	FALSE	59	21	0	114	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND3--MT-ATP8	3	0	MT-ND3	1094	chrM:10152:+	MT-ATP8	4474	chrM:8493:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	1	1	0.0274	FALSE	351	233	23	137	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	1	1	0.0274	FALSE	230	193	14	283	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2444_LUNG	1	1	0.0274	FALSE	231	205	14	283	0	FALSE	ACH-000186
NCIH2444_LUNG	MT-TA--MT-TN	3	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2444_LUNG	1	1	0.0274	FALSE	369	2501	205	193	0	FALSE	ACH-000186
NCIH2444_LUNG	RP11-123O10.4--GRIP1	2	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0.0274	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2444_LUNG	1	1	0.0457	FALSE	93	270	15	244	0	FALSE	ACH-000186
NCIH2444_LUNG	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0183	0.0274	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2444_LUNG	0.83	1	0.0457	FALSE	275	511	55	178	0	FALSE	ACH-000186
NCIH2444_LUNG	CMTM8--CMTM7	2	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	24	23	0.11	0.12	0.0183	0.0091	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	NCIH2444_LUNG	0.11	0.12	0.0274	FALSE	118	557	29	88	0	FALSE	ACH-000186
NCIH2444_LUNG	VCL--ADK	2	1	VCL	11299	chr10:75849956:+	ADK	44860	chr10:76468079:+	ONLY_REF_SPLICE	YES	157	196	0.02	0.02	0.0183	0.0091	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[31042],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ADK->adenosine_kinase,chr10:75910960-76469061:+	NCIH2444_LUNG	0.02	0.02	0.0274	FALSE	0	0	0	1	0	FALSE	ACH-000186
NCIH2444_LUNG	ADAP1--MAD1L1	2	0	ADAP1	9672	chr7:959605:-	MAD1L1	53647	chr7:1938026:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	NCIH2444_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	ADAP1--SUN1	2	0	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	NCIH2444_LUNG	1	1	0.0183	TRUE	16	22	0	27	0	FALSE	ACH-000186
NCIH2444_LUNG	CPSF6--CHMP1A	2	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH2444_LUNG	1	1	0.0183	TRUE	95	74	6	34	0	FALSE	ACH-000186
NCIH2444_LUNG	FN1--C9orf3	2	0	FN1	14797	chr2:216279560:-	C9orf3	91728	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	NCIH2444_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	KCMF1--FN1	2	0	KCMF1	5579	chr2:85262278:+	FN1	65209	chr2:216230353:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	KCMF1->Oncogene{Bushman},chr2:85198216-85286595:+,potassium_channel_modulatory_factor_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	NCIH2444_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	MYH9--PKM	2	0	MYH9	5055	chr22:36737415:-	PKM	51182	chr15:72511451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	NCIH2444_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2444_LUNG	1	1	0.0183	FALSE	25	145	6	90	0	FALSE	ACH-000186
NCIH2444_LUNG	RCC1--PSMG3	2	0	RCC1	2175	chr1:28834672:+	PSMG3	20523	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	NCIH2444_LUNG	1	1	0.0183	TRUE	0	0	0	2	0	TRUE	ACH-000186
NCIH2444_LUNG	RP11-466I1.1--CTD-3012A18.1	2	0	RP11-466I1.1	2424	chr11:29233312:+	CTD-3012A18.1	8905	chr11:29573907:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	RP11-466I1.1->chr11:29181503-29288281:+,CTD-3012A18.1->chr11:29540623-29574186:+	NCIH2444_LUNG	1	1	0.0183	TRUE	0	2	0	4	2	TRUE	ACH-000186
NCIH2444_LUNG	RPS6KA4--MROH1	2	0	RPS6KA4	3402	chr11:64129021:+	MROH1	18317	chr8:145234358:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	RPS6KA4->chr11:64126620-64139687:+,ribosomal_protein_S6_kinase_A4,MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1	NCIH2444_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	SLC39A9--KIAA0247	2	0	SLC39A9	6891	chr14:69908983:+	KIAA0247	20622	chr14:70125230:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	SLC39A9->chr14:69864732-69929105:+,solute_carrier_family_39_member_9,KIAA0247->chr14:70078313-70181859:+	NCIH2444_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000186
NCIH2444_LUNG	TWSG1--VAPA	2	0	TWSG1	2314	chr18:9337350:+	VAPA	24729	chr18:9950392:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	TWSG1->chr18:9334765-9402418:+,twisted_gastrulation_BMP_signaling_modulator_1,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	NCIH2444_LUNG	1	1	0.0183	TRUE	0	1	0	1	1	TRUE	ACH-000186
NCIH2444_LUNG	PPP2R4--NUP188	1	3	PPP2R4	16381	chr9:131904831:+	NUP188	31391	chr9:131731679:+	ONLY_REF_SPLICE	YES	207	32	0.02	0.11	0.0091	0.0274	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,NUP188->chr9:131709978-131769375:+,nucleoporin_188kDa	NCIH2444_LUNG	0.02	0.11	0.0365	TRUE	0	0	0	1	0	FALSE	ACH-000186
NCIH2444_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	5	0.33	0.38	0.0091	0.0183	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2444_LUNG	0.33	0.38	0.0274	FALSE	0	48	1	163	0	FALSE	ACH-000186
NCIH2444_LUNG	ARL15--NDUFS4	1	1	ARL15	5950	chr5:53409032:-	NDUFS4	18000	chr5:52942063:+	ONLY_REF_SPLICE	YES	12	290	0.14	0.01	0.0091	0.0091	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	NCIH2444_LUNG	0.01	0.14	0.0182	FALSE	5	61	2	9	0	FALSE	ACH-000186
NCIH2444_LUNG	ETV6--YBX3	1	1	ETV6	1307	chr12:11803094:+	YBX3	25286	chr12:10871742:-	ONLY_REF_SPLICE	YES	14	73	0.12	0.03	0.0091	0.0091	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1},ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,YBX3->Y-box_binding_protein_3,chr12:10851683-10875911:-	NCIH2444_LUNG	0.03	0.12	0.0182	TRUE	0	0	0	1	0	FALSE	ACH-000186
NCIH2444_LUNG	HIF1A--PPM1A	1	1	HIF1A	1327	chr14:62162557:+	PPM1A	30835	chr14:60749402:+	ONLY_REF_SPLICE	YES	613	5	0	0.29	0.0091	0.0091	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PPM1A->chr14:60712470-60765805:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1A	NCIH2444_LUNG	0	0.29	0.0182	FALSE	0	0	0	2	0	FALSE	ACH-000186
NCIH2444_LUNG	LINC00152--AC093616.4	1	1	LINC00152	1278	chr2:87755164:+	AC093616.4	21811	chr2:88012878:+	ONLY_REF_SPLICE	YES	364	36	0.01	0.05	0.0091	0.0091	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	NCIH2444_LUNG	0.01	0.05	0.0182	FALSE	0	0	0	3	0	FALSE	ACH-000186
NCIH2444_LUNG	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.29	0.0091	0.0091	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2444_LUNG	0.29	1	0.0182	TRUE	458	1351	185	561	0	FALSE	ACH-000186
A101D_SKIN	YBX1--CCDC30	241	85	YBX1	5138	chr1:43162933:+	CCDC30	41381	chr1:43057761:+	INCL_NON_REF_SPLICE	YES	3678	29	0.08	0.92	2.7212	0.9598	LOCAL_REARRANGEMENT:+:[27763],YBX1->Oncogene{Bushman},Y-box_binding_protein_1,chr1:43148098-43168020:+,CCDC30->chr1:42929001-43120335:+,coiled-coil_domain_containing_30	A101D_SKIN	0.08	0.92	3.681	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	TIMM23B--LINC00843	121	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.3662	0.2823	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	A101D_SKIN	0.99	1	1.6485	TRUE	508	994	45	981	0	FALSE	ACH-000008
A101D_SKIN	MT-TA--MT-TN	80	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9033	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A101D_SKIN	1	1	0.9033	FALSE	369	2501	205	193	0	FALSE	ACH-000008
A101D_SKIN	TIMM23--RP11-464F9.1	73	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	266	2	0.22	0.97	0.8243	0.0339	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	A101D_SKIN	0.22	0.97	0.8582	TRUE	519	3926	326	965	0	FALSE	ACH-000008
A101D_SKIN	OSBPL5--KCNQ1-AS1	40	4	OSBPL5	2524	chr11:3186446:-	KCNQ1-AS1	32837	chr11:2861672:-	ONLY_REF_SPLICE	YES	3	0	0.94	1	0.4516	0.0452	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,KCNQ1-AS1->KCNQ1_antisense_RNA_1,chr11:2861365-2882798:-	A101D_SKIN	0.94	1	0.4968	TRUE	0	0	0	2	0	TRUE	ACH-000008
A101D_SKIN	AP003900.6--AP000345.1	32	6	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	7	0	0.84	1	0.3613	0.0677	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	A101D_SKIN	0.84	1	0.429	TRUE	0	8	0	37	1	FALSE	ACH-000008
A101D_SKIN	MT-TA--MT-TC	32	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3613	0.0226	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A101D_SKIN	1	1	0.3839	FALSE	462	80	0	856	0	FALSE	ACH-000008
A101D_SKIN	AP003900.6--AP000345.1	28	2	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	4	0	0.88	1	0.3162	0.0226	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	A101D_SKIN	0.88	1	0.3388	TRUE	4	17	0	31	0	FALSE	ACH-000008
A101D_SKIN	RP11-444D3.1--SOX5	26	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	19	1	0.63	0.2936	0.079	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	A101D_SKIN	0.63	1	0.3726	TRUE	477	1352	189	275	0	FALSE	ACH-000008
A101D_SKIN	BAGE2--CTBP2P1	25	7	BAGE2	5645	chr21:11058161:-	CTBP2P1	23085	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	67	0	0.32	1	0.2823	0.079	BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	A101D_SKIN	0.32	1	0.3613	TRUE	0	0	0	6	0	TRUE	ACH-000008
A101D_SKIN	HSPBP1--ZSWIM6	24	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.271	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	A101D_SKIN	1	1	0.271	TRUE	47	32	1	28	0	FALSE	ACH-000008
A101D_SKIN	MT-TA--MT-TN	9	53	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1016	0.5984	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A101D_SKIN	1	1	0.7	FALSE	369	2501	205	193	0	FALSE	ACH-000008
A101D_SKIN	MT-ND6--MT-TE	21	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2371	0.0226	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A101D_SKIN	1	1	0.2597	FALSE	499	1288	110	792	0	FALSE	ACH-000008
A101D_SKIN	MT-TA--MT-TN	7	46	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.079	0.5194	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A101D_SKIN	1	1	0.5984	FALSE	369	2501	205	193	0	FALSE	ACH-000008
A101D_SKIN	MT-TA--MT-TN	18	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2032	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A101D_SKIN	1	1	0.2032	FALSE	369	2501	205	193	0	FALSE	ACH-000008
A101D_SKIN	NIPA2--POLA1	17	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.192	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	A101D_SKIN	1	1	0.192	TRUE	46	1352	75	139	0	FALSE	ACH-000008
A101D_SKIN	MT-TA--MT-TN	12	19	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1355	0.2145	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A101D_SKIN	1	1	0.35	FALSE	369	2501	205	193	0	FALSE	ACH-000008
A101D_SKIN	C15orf57--CBX3	13	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	57	49	0.32	0.36	0.1468	0.1581	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A101D_SKIN	0.32	0.36	0.3049	TRUE	267	562	48	632	0	FALSE	ACH-000008
A101D_SKIN	MT-TA--MT-TN	3	49	MT-TA	1055	chrM:5601:-	MT-TN	3986	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0339	0.5533	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A101D_SKIN	1	1	0.5872	FALSE	369	2501	205	193	0	FALSE	ACH-000008
A101D_SKIN	NRIP1--AF127936.7	13	5	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.69	1	0.1468	0.0565	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A101D_SKIN	0.69	1	0.2033	FALSE	292	1546	117	613	0	FALSE	ACH-000008
A101D_SKIN	TIMP3--MT-ND4	14	1	TIMP3	5621	chr22:33255392:+	MT-ND4	12727	chrM:11227:+	INCL_NON_REF_SPLICE	YES	3675	14817	0	0	0.1581	0.0113	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	A101D_SKIN	0	0	0.1694	FALSE	0	0	0	10	0	FALSE	ACH-000008
A101D_SKIN	MT-ND6--MT-TE	13	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1468	0.0226	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A101D_SKIN	1	1	0.1694	FALSE	499	1288	110	792	0	FALSE	ACH-000008
A101D_SKIN	MT-TA--MT-TN	4	35	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0.3952	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A101D_SKIN	1	1	0.4404	FALSE	369	2501	205	193	0	FALSE	ACH-000008
A101D_SKIN	RP11-141M1.3--STARD13	11	4	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	73	0.83	0.17	0.1242	0.0452	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	A101D_SKIN	0.17	0.83	0.1694	FALSE	141	264	50	91	0	FALSE	ACH-000008
A101D_SKIN	C15orf57--CBX3	9	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	56	50	0.23	0.25	0.1016	0.0903	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A101D_SKIN	0.23	0.25	0.1919	TRUE	267	562	48	632	0	FALSE	ACH-000008
A101D_SKIN	MT-TA--MT-TC	10	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1129	0.0226	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A101D_SKIN	1	1	0.1355	FALSE	462	80	0	856	0	FALSE	ACH-000008
A101D_SKIN	MT-ATP6--MT-CO2	9	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	30	4	0.29	0.75	0.1016	0.0339	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A101D_SKIN	0.29	0.75	0.1355	FALSE	59	21	0	114	0	FALSE	ACH-000008
A101D_SKIN	NRIP1--AF127936.7	7	9	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	23	0	0.41	1	0.079	0.1016	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A101D_SKIN	0.41	1	0.1806	FALSE	125	705	46	456	0	FALSE	ACH-000008
A101D_SKIN	OSBPL5--KCNQ1-AS1	9	1	OSBPL5	2517	chr11:3186453:-	KCNQ1-AS1	32837	chr11:2861672:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.1016	0.0113	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,KCNQ1-AS1->KCNQ1_antisense_RNA_1,chr11:2861365-2882798:-	A101D_SKIN	0.83	1	0.1129	TRUE	0	0	0	2	0	TRUE	ACH-000008
A101D_SKIN	RP11-141M1.3--STARD13	8	5	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	4	73	0.76	0.15	0.0903	0.0565	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	A101D_SKIN	0.15	0.76	0.1468	FALSE	49	120	16	70	0	FALSE	ACH-000008
A101D_SKIN	SLC1A5--MT-ND4L	9	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	499	0	0.02	1	0.1016	0.0113	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A101D_SKIN	0.02	1	0.1129	FALSE	0	0	0	189	0	FALSE	ACH-000008
A101D_SKIN	MT-ATP6--MT-CO2	8	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	35	9	0.26	0.57	0.0903	0.0452	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A101D_SKIN	0.26	0.57	0.1355	FALSE	59	21	0	114	0	FALSE	ACH-000008
A101D_SKIN	KANSL1--ARL17B	7	6	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	23	10	0.36	0.57	0.079	0.0677	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	A101D_SKIN	0.36	0.57	0.1467	TRUE	181	1564	124	196	0	FALSE	ACH-000008
A101D_SKIN	MT-ND6--MT-TE	7	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.079	0.0452	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A101D_SKIN	1	1	0.1242	FALSE	499	1288	110	792	0	FALSE	ACH-000008
A101D_SKIN	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0903	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A101D_SKIN	1	1	0.0903	FALSE	462	80	0	856	0	FALSE	ACH-000008
A101D_SKIN	MT-TA--MT-TN	8	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0903	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A101D_SKIN	1	1	0.0903	FALSE	369	2501	205	193	0	FALSE	ACH-000008
A101D_SKIN	YBX1--CCDC30	7	4	YBX1	5138	chr1:43162933:+	CCDC30	45865	chr1:43076649:+	ONLY_REF_SPLICE	YES	3678	0	0	1	0.079	0.0452	LOCAL_REARRANGEMENT:+:[27763],YBX1->Oncogene{Bushman},Y-box_binding_protein_1,chr1:43148098-43168020:+,CCDC30->chr1:42929001-43120335:+,coiled-coil_domain_containing_30	A101D_SKIN	0	1	0.1242	TRUE	0	0	0	1	0	FALSE	ACH-000008
A101D_SKIN	RP11-444D3.1--SOX5	6	6	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	19	1	0.39	0.0677	0.0677	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	A101D_SKIN	0.39	1	0.1354	TRUE	274	363	69	150	0	FALSE	ACH-000008
A101D_SKIN	MT-ATP6--MT-CO1	7	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8816	22896	0	0	0.079	0.0113	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A101D_SKIN	0	0	0.0903	FALSE	183	104	9	328	0	FALSE	ACH-000008
A101D_SKIN	LIF--MT-CO1	7	0	LIF	3257	chr22:30639841:-	MT-CO1	10305	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.079	0	LIF->chr22:30636436-30642840:-,leukemia_inhibitory_factor,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A101D_SKIN	1	1	0.079	FALSE	0	0	0	8	0	FALSE	ACH-000008
A101D_SKIN	MT-ATP6--MT-CO1	6	4	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3171	23124	0	0	0.0677	0.0452	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A101D_SKIN	0	0	0.1129	FALSE	183	104	9	328	0	FALSE	ACH-000008
A101D_SKIN	MT-ATP6--MT-CO1	6	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	8855	22458	0	0	0.0677	0.0113	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A101D_SKIN	0	0	0.079	FALSE	183	104	9	328	0	FALSE	ACH-000008
A101D_SKIN	MT-ND6--MT-TE	3	13	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0.1468	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A101D_SKIN	1	1	0.1807	FALSE	499	1288	110	792	0	FALSE	ACH-000008
A101D_SKIN	NRIP1--AF127936.7	4	9	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	27	0	0.33	1	0.0452	0.1016	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A101D_SKIN	0.33	1	0.1468	FALSE	164	806	69	479	0	FALSE	ACH-000008
A101D_SKIN	MT-ATP6--MT-CO2	5	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	35	3	0.2	0.75	0.0565	0.0452	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A101D_SKIN	0.2	0.75	0.1017	FALSE	59	21	0	114	0	FALSE	ACH-000008
A101D_SKIN	MT-ATP6--MT-CO2	5	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	35	6	0.2	0.6	0.0565	0.0452	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A101D_SKIN	0.2	0.6	0.1017	FALSE	59	21	0	114	0	FALSE	ACH-000008
A101D_SKIN	RPTOR--JMJD6	5	4	RPTOR	1973	chr17:78519591:+	JMJD6	49452	chr17:74721937:-	ONLY_REF_SPLICE	YES	50	142	0.15	0.06	0.0565	0.0452	RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1,JMJD6->arginine_demethylase_and_lysine_hydroxylase,chr17:74708919-74722866:-	A101D_SKIN	0.06	0.15	0.1017	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	MT-ND6--MT-TE	3	11	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0.1242	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A101D_SKIN	1	1	0.1581	FALSE	499	1288	110	792	0	FALSE	ACH-000008
A101D_SKIN	AC027612.3--AP000345.1	5	1	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	6	0	0.5	1	0.0565	0.0113	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	A101D_SKIN	0.5	1	0.0678	TRUE	0	0	0	11	0	TRUE	ACH-000008
A101D_SKIN	MT-ATP6--MT-CO1	4	5	MT-ATP6	1303	chrM:8829:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	14767	20716	0	0	0.0452	0.0565	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A101D_SKIN	0	0	0.1017	FALSE	183	104	9	328	0	FALSE	ACH-000008
A101D_SKIN	NDUFA4--PHF14	5	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	795	45	0.01	0.12	0.0565	0.0113	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	A101D_SKIN	0.01	0.12	0.0678	FALSE	19	32	3	60	0	FALSE	ACH-000008
A101D_SKIN	MT-ND6--MT-TE	3	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0.0903	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A101D_SKIN	1	1	0.1242	FALSE	499	1288	110	792	0	FALSE	ACH-000008
A101D_SKIN	MT-ATP6--MT-CO1	4	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10736	22826	0	0	0.0452	0.0113	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A101D_SKIN	0	0	0.0565	FALSE	183	104	9	328	0	FALSE	ACH-000008
A101D_SKIN	MT-ATP6--MT-CO2	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	18	3	0.22	0.62	0.0452	0.0113	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A101D_SKIN	0.22	0.62	0.0565	FALSE	59	21	0	114	0	FALSE	ACH-000008
A101D_SKIN	NGFR--RAB7A	4	1	NGFR	10130	chr17:47591411:+	RAB7A	20568	chr3:128532440:+	INCL_NON_REF_SPLICE	YES	1441	1503	0	0	0.0452	0.0113	NGFR->Oncogene{Bushman},chr17:47572655-47592379:+,nerve_growth_factor_receptor,RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+	A101D_SKIN	0	0	0.0565	FALSE	0	0	0	1	0	FALSE	ACH-000008
A101D_SKIN	RP11-123O10.4--GRIP1	4	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0452	0.0113	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	A101D_SKIN	1	1	0.0565	FALSE	416	2512	207	587	0	FALSE	ACH-000008
A101D_SKIN	RPSAP52--HMGA2	4	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	2	426	0.71	0.01	0.0452	0.0113	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	A101D_SKIN	0.01	0.71	0.0565	FALSE	0	59	0	125	0	FALSE	ACH-000008
A101D_SKIN	MT-ATP6--MT-CO2	3	4	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	37	3	0.16	0.7	0.0339	0.0452	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A101D_SKIN	0.16	0.7	0.0791	FALSE	59	21	0	114	0	FALSE	ACH-000008
A101D_SKIN	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A101D_SKIN	1	1	0.0452	FALSE	499	1288	110	792	0	FALSE	ACH-000008
A101D_SKIN	OSBPL5--KCNQ1-AS1	3	4	OSBPL5	2524	chr11:3186446:-	KCNQ1-AS1	31640	chr11:2880169:-	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0339	0.0452	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,KCNQ1-AS1->KCNQ1_antisense_RNA_1,chr11:2861365-2882798:-	A101D_SKIN	0.7	1	0.0791	TRUE	0	0	0	2	0	TRUE	ACH-000008
A101D_SKIN	PHLDA1--MT-ND5	4	0	PHLDA1	4144	chr12:76424569:-	MT-ND5	13202	chrM:13052:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	PHLDA1->chr12:76419227-76427712:-,pleckstrin_homology_like_domain_family_A_member_1,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	A101D_SKIN	1	1	0.0452	FALSE	0	0	0	3	0	FALSE	ACH-000008
A101D_SKIN	NRIP1--AF127936.7	3	2	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	8	6	0.38	0.45	0.0339	0.0226	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A101D_SKIN	0.38	0.45	0.0565	FALSE	25	145	6	90	0	FALSE	ACH-000008
A101D_SKIN	SLC1A5--MT-ND4L	3	2	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	494	0	0.01	1	0.0339	0.0226	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A101D_SKIN	0.01	1	0.0565	FALSE	0	0	0	189	0	FALSE	ACH-000008
A101D_SKIN	MT-ATP6--MT-CO1	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8833	22826	0	0	0.0339	0.0113	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A101D_SKIN	0	0	0.0452	FALSE	183	104	9	328	0	FALSE	ACH-000008
A101D_SKIN	MT-ATP6--MT-CO2	3	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	19	4	0.17	0.5	0.0339	0.0113	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A101D_SKIN	0.17	0.5	0.0452	FALSE	59	21	0	114	0	FALSE	ACH-000008
A101D_SKIN	NGFR--RAB7A	3	1	NGFR	10107	chr17:47591388:+	RAB7A	20542	chr3:128532414:+	INCL_NON_REF_SPLICE	YES	1394	1583	0	0	0.0339	0.0113	NGFR->Oncogene{Bushman},chr17:47572655-47592379:+,nerve_growth_factor_receptor,RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+	A101D_SKIN	0	0	0.0452	FALSE	0	0	0	1	0	FALSE	ACH-000008
A101D_SKIN	NGFR--RAB7A	3	1	NGFR	10122	chr17:47591403:+	RAB7A	20560	chr3:128532432:+	INCL_NON_REF_SPLICE	YES	1400	1568	0	0	0.0339	0.0113	NGFR->Oncogene{Bushman},chr17:47572655-47592379:+,nerve_growth_factor_receptor,RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+	A101D_SKIN	0	0	0.0452	FALSE	0	0	0	1	0	FALSE	ACH-000008
A101D_SKIN	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0.0113	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A101D_SKIN	1	1	0.0452	FALSE	515	4851	409	746	0	FALSE	ACH-000008
A101D_SKIN	EXOC2--LINC00240	3	0	EXOC2	1099	chr6:693019:-	LINC00240	44855	chr6:26991033:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	EXOC2->chr6:485133-693117:-,exocyst_complex_component_2,LINC00240->chr6:26924771-26991703:+,long_intergenic_non-protein_coding_RNA_240	A101D_SKIN	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	MT-ATP6--MT-CO1	3	0	MT-ATP6	1082	chrM:8608:+	MT-CO1	5379	chrM:6601:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A101D_SKIN	1	1	0.0339	FALSE	183	104	9	328	0	FALSE	ACH-000008
A101D_SKIN	TIMM23B--LINC00843	3	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	A101D_SKIN	1	1	0.0339	TRUE	62	24	1	171	0	FALSE	ACH-000008
A101D_SKIN	VIM--GPX1	3	0	VIM	2101	chr10:17271358:+	GPX1	13186	chr3:49395052:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},VIM->chr10:17270258-17279592:+,vimentin,GPX1->Oncogene{Bushman},chr3:49394609-49396033:-,glutathione_peroxidase_1	A101D_SKIN	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	RP11-634B7.4--TRIM58	2	3	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	20	1	0.2	0.0226	0.0339	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	A101D_SKIN	0.2	1	0.0565	TRUE	158	633	76	73	0	FALSE	ACH-000008
A101D_SKIN	AC027612.3--AP000345.1	2	1	AC027612.3	3881	chr2:91893844:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0.0113	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	A101D_SKIN	1	1	0.0339	TRUE	0	0	0	11	0	TRUE	ACH-000008
A101D_SKIN	RP11-141M1.3--STARD13	2	1	RP11-141M1.3	5599	chr13:34098375:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	8	73	0.27	0.04	0.0226	0.0113	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	A101D_SKIN	0.04	0.27	0.0339	FALSE	9	22	2	16	0	FALSE	ACH-000008
A101D_SKIN	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0.0113	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A101D_SKIN	1	1	0.0339	FALSE	467	2173	244	435	0	FALSE	ACH-000008
A101D_SKIN	ABL2--TOR3A	2	0	ABL2	6230	chr1:179095512:-	TOR3A	36121	chr1:179063228:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_INVERSION:-:+:[1304],ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,TOR3A->chr1:179050512-179067158:+,torsin_family_3_member_A	A101D_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	AP003900.6--AP000345.1	1	4	AP003900.6	2187	chr21:11172043:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	NO	8	0	0.38	1	0.0113	0.0452	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	A101D_SKIN	0.38	1	0.0565	TRUE	1	2	0	16	0	FALSE	ACH-000008
A101D_SKIN	ATRX--ACSL4	2	0	ATRX	20367	chrX:76907604:-	ACSL4	56952	chrX:108917702:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,ACSL4->acyl-CoA_synthetase_long-chain_family_member_4,chrX:108867473-108976632:-	A101D_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	EXOC2--LINC00240	2	0	EXOC2	2173	chr6:689139:-	LINC00240	44855	chr6:26991033:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	EXOC2->chr6:485133-693117:-,exocyst_complex_component_2,LINC00240->chr6:26924771-26991703:+,long_intergenic_non-protein_coding_RNA_240	A101D_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	EXT1--MAP3K5	2	0	EXT1	2769	chr8:119122324:-	MAP3K5	39704	chr6:136944119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,MAP3K5->chr6:136878185-137113656:-,mitogen-activated_protein_kinase_kinase_kinase_5	A101D_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	FAM126A--OLA1	2	0	FAM126A	1206	chr7:23053544:-	OLA1	27513	chr2:175006728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	FAM126A->chr7:22980878-23053749:-,family_with_sequence_similarity_126_member_A,OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-	A101D_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	OSBPL5--KCNQ1-AS1	1	4	OSBPL5	3800	chr11:3185170:-	KCNQ1-AS1	31640	chr11:2880169:-	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0113	0.0452	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,KCNQ1-AS1->KCNQ1_antisense_RNA_1,chr11:2861365-2882798:-	A101D_SKIN	0.56	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	PLD1--SARS	2	0	PLD1	1552	chr3:171528189:-	SARS	47003	chr1:109766600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	PLD1->Oncogene{Bushman},chr3:171318195-171528740:-,phospholipase_D1,SARS->chr1:109756540-109780791:+,seryl-tRNA_synthetase	A101D_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	REV3L--HEXB	2	0	REV3L	11027	chr6:111710309:-	HEXB	63742	chr5:74016253:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,HEXB->chr5:73935848-74018472:+,hexosaminidase_subunit_beta	A101D_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	RP11-141M1.3--STARD13	1	4	RP11-141M1.3	8903	chr13:34013828:-	STARD13	24492	chr13:33739555:-	ONLY_REF_SPLICE	YES	3	57	0.62	0.08	0.0113	0.0452	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	A101D_SKIN	0.08	0.62	0.0565	FALSE	0	0	0	1	0	FALSE	ACH-000008
A101D_SKIN	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	A101D_SKIN	1	1	0.0226	TRUE	53	396	64	110	0	FALSE	ACH-000008
A101D_SKIN	ZNF615--MORC2	2	0	ZNF615	1090	chr19:52511394:-	MORC2	17854	chr22:31354680:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ZNF615->chr19:52494585-52511483:-,zinc_finger_protein_615,MORC2->MORC_family_CW-type_zinc_finger_2,chr22:31321117-31364284:-	A101D_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	RP11-141M1.3--STARD13	1	2	RP11-141M1.3	6791	chr13:34094095:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	8	73	0.27	0.04	0.0113	0.0226	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	A101D_SKIN	0.04	0.27	0.0339	FALSE	1	2	1	7	0	FALSE	ACH-000008
A101D_SKIN	RP11-285C1.2--TRIM2	1	2	RP11-285C1.2	3386	chr4:153987509:+	TRIM2	15880	chr4:154191487:+	ONLY_REF_SPLICE	YES	7	107	0.3	0.03	0.0113	0.0226	NEIGHBORS[61177],RP11-285C1.2->chr4:153955363-154012317:+,TRIM2->chr4:154073494-154260472:+,tripartite_motif_containing_2	A101D_SKIN	0.03	0.3	0.0339	FALSE	0	1	0	2	0	FALSE	ACH-000008
A101D_SKIN	AAMP--ARPC2	1	1	AAMP	1876	chr2:219134105:-	ARPC2	19253	chr2:219103387:+	ONLY_REF_SPLICE	NO	372	826	0.01	0	0.0113	0.0113	{Klijn_CCL:Ovary=1},LOCAL_INVERSION:-:+:[9771],AAMP->angio_associated_migratory_cell_protein,chr2:219128850-219134980:-,ARPC2->actin_related_protein_2/3_complex_subunit_2,chr2:219081817-219119079:+	A101D_SKIN	0	0.01	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000008
A101D_SKIN	CD44--PDHX	1	1	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	892	98	0	0.02	0.0113	0.0113	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	A101D_SKIN	0	0.02	0.0226	FALSE	0	7	0	19	1	FALSE	ACH-000008
A101D_SKIN	CPB2-AS1--ZC3H13	1	1	CPB2-AS1	1160	chr13:46627100:+	ZC3H13	15921	chr13:46616410:-	ONLY_REF_SPLICE	YES	1	88	0.67	0.02	0.0113	0.0113	LOCAL_INVERSION:+:-:[47],CPB2-AS1->CPB2_antisense_RNA_1,chr13:46626941-46687467:+,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	A101D_SKIN	0.02	0.67	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000008
A101D_SKIN	GABPA--APP	1	1	GABPA	2009	chr21:27107889:+	APP	28477	chr21:27394358:-	ONLY_REF_SPLICE	YES	55	1031	0.04	0	0.0113	0.0113	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},GABPA->GA_binding_protein_transcription_factor_alpha_subunit,chr21:27106881-27144771:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	A101D_SKIN	0	0.04	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000008
A101D_SKIN	NDUFA4--PHF14	1	1	NDUFA4	1241	chr7:10979643:-	PHF14	12995	chr7:11030330:+	ONLY_REF_SPLICE	YES	795	99	0	0.02	0.0113	0.0113	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	A101D_SKIN	0	0.02	0.0226	FALSE	1	0	0	3	0	FALSE	ACH-000008
A101D_SKIN	POLR2F--MYH9	1	1	POLR2F	12042	chr22:38382319:+	MYH9	42171	chr22:36701148:-	ONLY_REF_SPLICE	YES	14	435	0.12	0	0.0113	0.0113	POLR2F->chr22:38348614-38437922:+,polymerase_(RNA)_II_subunit_F,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	A101D_SKIN	0	0.12	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000008
A101D_SKIN	PPP3CA--RAP1GDS1	1	1	PPP3CA	2540	chr4:102267896:-	RAP1GDS1	29048	chr4:99264290:+	ONLY_REF_SPLICE	YES	21	73	0.09	0.03	0.0113	0.0113	PPP3CA->chr4:101944566-102269435:-,protein_phosphatase_3_catalytic_subunit_alpha,RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+	A101D_SKIN	0.03	0.09	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000008
A101D_SKIN	PRIM2--BEND6	1	1	PRIM2	8956	chr6:57246966:+	BEND6	26887	chr6:56846509:+	ONLY_REF_SPLICE	YES	46	6	0.04	0.25	0.0113	0.0113	PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2,BEND6->BEN_domain_containing_6,chr6:56819773-56892140:+	A101D_SKIN	0.04	0.25	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000008
A101D_SKIN	PRR16--CTD-2334D19.1	1	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	18	0	0.1	1	0.0113	0.0113	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	A101D_SKIN	0.1	1	0.0226	FALSE	56	216	12	147	0	FALSE	ACH-000008
A101D_SKIN	RP11-285C1.2--TRIM2	1	1	RP11-285C1.2	2218	chr4:153958132:+	TRIM2	15880	chr4:154191487:+	ONLY_REF_SPLICE	YES	11	107	0.15	0.02	0.0113	0.0113	NEIGHBORS[61177],RP11-285C1.2->chr4:153955363-154012317:+,TRIM2->chr4:154073494-154260472:+,tripartite_motif_containing_2	A101D_SKIN	0.02	0.15	0.0226	FALSE	0	1	0	2	0	FALSE	ACH-000008
A101D_SKIN	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	18992	chr12:23999127:-	ONLY_REF_SPLICE	NO	0	49	1	0.04	0.0113	0.0113	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	A101D_SKIN	0.04	1	0.0226	TRUE	3	4	0	10	0	FALSE	ACH-000008
A101D_SKIN	SCARB1--UBC	1	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	493	66	0	0.03	0.0113	0.0113	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	A101D_SKIN	0	0.03	0.0226	FALSE	55	66	6	101	0	FALSE	ACH-000008
A101D_SKIN	SUPT16H--BST1	1	1	SUPT16H	1405	chr14:21852021:-	BST1	28308	chr4:15709134:+	ONLY_REF_SPLICE	YES	176	12	0.01	0.14	0.0113	0.0113	SUPT16H->SPT16_homolog,_facilitates_chromatin_remodeling_subunit,chr14:21819631-21852425:-,BST1->bone_marrow_stromal_cell_antigen_1,chr4:15704573-15739936:+	A101D_SKIN	0.01	0.14	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000008
A101D_SKIN	TBC1D19--RBPJ	1	1	TBC1D19	2770	chr4:26585914:+	RBPJ	38524	chr4:26364068:+	ONLY_REF_SPLICE	NO	48	25	0.04	0.07	0.0113	0.0113	TBC1D19->TBC1_domain_family_member_19,chr4:26578059-26756973:+,RBPJ->chr4:26165077-26436541:+,recombination_signal_binding_protein_for_immunoglobulin_kappa_J_region	A101D_SKIN	0.04	0.07	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000008
A101D_SKIN	TBC1D19--RBPJ	1	1	TBC1D19	2770	chr4:26585914:+	RBPJ	42703	chr4:26387975:+	ONLY_REF_SPLICE	YES	48	57	0.04	0.03	0.0113	0.0113	TBC1D19->TBC1_domain_family_member_19,chr4:26578059-26756973:+,RBPJ->chr4:26165077-26436541:+,recombination_signal_binding_protein_for_immunoglobulin_kappa_J_region	A101D_SKIN	0.03	0.04	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000008
A101D_SKIN	VAPA--USP14	1	1	VAPA	1334	chr18:9914332:+	USP14	30541	chr18:196637:+	ONLY_REF_SPLICE	YES	292	191	0.01	0.01	0.0113	0.0113	VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,USP14->chr18:158383-214629:+,ubiquitin_specific_peptidase_14	A101D_SKIN	0.01	0.01	0.0226	FALSE	0	0	0	2	0	FALSE	ACH-000008
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	53	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7547	0.3987	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1534	TRUE	508	994	45	981	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	39	33	KMT2A	18437	chr11:118355690:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	6	6	0.92	0.92	0.5554	0.4699	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	0.92	1.0253	TRUE	0	0	0	4	0	TRUE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	38	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5411	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5411	TRUE	0	0	0	518	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	36	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5127	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5127	FALSE	462	80	0	856	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	36	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5127	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5127	TRUE	519	3926	326	965	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PTCD3	28	0	C17orf76-AS1	3754	chr17:16344889:+	PTCD3	29917	chr2:86359744:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3987	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3987	TRUE	0	0	0	4	0	TRUE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	21	28	KMT2A	17776	chr11:118355029:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	6	6	0.89	0.89	0.299	0.3987	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.89	0.6977	TRUE	0	0	0	4	0	TRUE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	8	21	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	129	30	0.18	0.49	0.1139	0.299	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.49	0.4129	TRUE	267	562	48	632	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	12	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	5770	0	0	1	0.1709	0.0285	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1994	FALSE	13	9	0	364	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPG11--MRPL52	12	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1709	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1709	TRUE	38	11	0	19	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	10	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	5748	0	0	1	0.1424	0.0285	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1709	FALSE	13	9	0	364	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SAMHD1--RP11-344E13.3	5	5	SAMHD1	3548	chr20:35569442:-	RP11-344E13.3	25475	chr17:20795543:+	ONLY_REF_SPLICE	YES	93	81	0.1	0.11	0.0712	0.0712	SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-,RP11-344E13.3->chr17:20771746-20905589:+	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.11	0.1424	TRUE	0	0	0	1	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	5	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0712	0.057	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.1282	FALSE	515	4851	409	746	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	1	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0712	0.0142	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0854	FALSE	462	80	0	856	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.057	0.057	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.114	FALSE	467	2173	244	435	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	3	3	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1477	0	0	1	0.0427	0.0427	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0854	FALSE	0	0	0	189	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	2	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	40	0	0.11	1	0.0427	0.0285	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0712	FALSE	114	26	4	85	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	2	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	42	0	0.11	1	0.0427	0.0285	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0712	FALSE	114	26	4	85	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	1	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0.0142	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0569	FALSE	462	80	0	856	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCARB1--UBC	3	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	114	44	0.03	0.08	0.0427	0.0142	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.08	0.0569	TRUE	55	66	6	101	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.75	1	0.0285	0.057	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0855	FALSE	407	2205	196	549	0	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGF2BP2--TRA2B	2	1	IGF2BP2	2393	chr3:185540941:-	TRA2B	30253	chr3:185649640:-	ONLY_REF_SPLICE	YES	279	1566	0.01	0	0.0285	0.0142	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0427	FALSE	0	7	0	3	1	FALSE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PTCD3	2	0	C17orf76-AS1	1593	chr17:16342728:+	PTCD3	33495	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0285	TRUE	0	3	0	8	0	TRUE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf48--LINS	2	0	C19orf48	3713	chr19:51305474:-	LINS	22212	chr15:101110322:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	C19orf48->chr19:51300961-51308186:-,chromosome_19_open_reading_frame_48,LINS->chr15:101099574-101143435:-	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C20orf197--PHACTR3	2	0	C20orf197	1084	chr20:58631063:+	PHACTR3	16564	chr20:58318162:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	C20orf197->chr20:58630980-58648008:+,chromosome_20_open_reading_frame_197,PHACTR3->chr20:58152564-58422766:+,phosphatase_and_actin_regulator_3	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKBKB--IRF2BP2	2	0	IKBKB	1904	chr8:42129723:+	IRF2BP2	29439	chr1:234743598:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	IKBKB->chr8:42128820-42189973:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_beta,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--CSDE1	2	0	RCC1	2175	chr1:28834672:+	CSDE1	38760	chr1:115263338:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-352G18.2--SEC16A	2	0	RP11-352G18.2	1294	chr15:66623748:-	SEC16A	28369	chr9:139342361:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	RP11-352G18.2->chr15:66607252-66624041:-,SEC16A->SEC16_homolog_A,_endoplasmic_reticulum_export_factor,chr9:139334549-139372141:-	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000362
MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ESYT1--SPTLC1	1	1	ESYT1	7025	chr12:56526585:+	SPTLC1	35156	chr9:94794840:-	ONLY_REF_SPLICE	YES	360	210	0.01	0.01	0.0142	0.0142	ESYT1->chr12:56512034-56538455:+,extended_synaptotagmin_protein_1,SPTLC1->chr9:94794281-94877666:-,serine_palmitoyltransferase_long_chain_base_subunit_1	MOLM13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0284	FALSE	0	0	0	1	0	FALSE	ACH-000362
SNU503_LARGE_INTESTINE	MTF2--RPL5	799	295	MTF2	1297	chr1:93545088:+	RPL5	26459	chr1:93306108:+	ONLY_REF_SPLICE	YES	83	2949	0.93	0.27	8.9932	3.3204	MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	SNU503_LARGE_INTESTINE	0.27	0.93	12.3136	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	DNTTIP2--ARHGAP29	212	125	DNTTIP2	5274	chr1:94341201:-	ARHGAP29	46419	chr1:94616071:-	ONLY_REF_SPLICE	YES	182	0	0.65	1	2.3862	1.4069	DNTTIP2->chr1:94333373-94345474:-,deoxynucleotidyltransferase_terminal_interacting_protein_2,ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-	SNU503_LARGE_INTESTINE	0.65	1	3.7931	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	CCAT1--CASC8	127	105	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	56	1	0.81	1	1.4295	1.1818	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU503_LARGE_INTESTINE	0.81	1	2.6113	TRUE	0	26	0	18	24	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	NPLOC4--PDE6G	110	37	NPLOC4	2267	chr17:79603942:-	PDE6G	37655	chr17:79620394:-	ONLY_REF_SPLICE	YES	16	7	0.9	0.95	1.2381	0.4165	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	SNU503_LARGE_INTESTINE	0.9	0.95	1.6546	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	PTAR1--FAM189A2	106	6	PTAR1	1107	chr9:72374769:-	FAM189A2	30540	chr9:71998546:+	ONLY_REF_SPLICE	YES	6	0	0.95	1	1.1931	0.0675	PTAR1->chr9:72324438-72374875:-,protein_prenyltransferase_alpha_subunit_repeat_containing_1,FAM189A2->chr9:71939488-72007371:+,family_with_sequence_similarity_189_member_A2	SNU503_LARGE_INTESTINE	0.95	1	1.2606	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	NPLOC4--PDE6G	100	27	NPLOC4	2267	chr17:79603942:-	PDE6G	38860	chr17:79618715:-	ONLY_REF_SPLICE	YES	16	52	0.89	0.71	1.1256	0.3039	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	SNU503_LARGE_INTESTINE	0.71	0.89	1.4295	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	TIMM23B--LINC00843	86	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.968	0.2139	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU503_LARGE_INTESTINE	1	1	1.1819	TRUE	508	994	45	981	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	TIMM23--RP11-464F9.1	48	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	174	6	0.23	0.9	0.5403	0.0563	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU503_LARGE_INTESTINE	0.23	0.9	0.5966	TRUE	519	3926	326	965	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	RAB40C--CAPN15	43	11	RAB40C	2077	chr16:640433:+	CAPN15	21038	chr16:596817:+	ONLY_REF_SPLICE	YES	23	14	0.7	0.79	0.484	0.1238	LOCAL_REARRANGEMENT:+:[34721],RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+,CAPN15->calpain_15,chr16:577717-604636:+	SNU503_LARGE_INTESTINE	0.7	0.79	0.6078	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	CAV2--NIN	42	12	CAV2	25408	chr7:116147428:+	NIN	71381	chr14:51186699:-	INCL_NON_REF_SPLICE	YES	16	3	0.77	0.95	0.4727	0.1351	CAV2->caveolin_2,chr7:115927434-116148595:+,NIN->Oncogene{Bushman},chr14:51186481-51297839:-,ninein	SNU503_LARGE_INTESTINE	0.77	0.95	0.6078	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	MT-TA--MT-TC	36	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4052	0.0563	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU503_LARGE_INTESTINE	1	1	0.4615	FALSE	462	80	0	856	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-255B23.4--CASC8	30	19	RP11-255B23.4	2391	chr8:128200030:-	CASC8	14642	chr8:128302305:-	ONLY_REF_SPLICE	YES	12	1	0.8	0.98	0.3377	0.2139	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU503_LARGE_INTESTINE	0.8	0.98	0.5516	TRUE	0	3	0	2	3	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-680G10.1--GSE1	27	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	50	1	0.37	0.3039	0.0225	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU503_LARGE_INTESTINE	0.37	1	0.3264	TRUE	465	1949	224	605	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	TBC1D32--CTD-2143L24.1	21	4	TBC1D32	27616	chr6:121484116:-	CTD-2143L24.1	48643	chr5:9884116:-	ONLY_REF_SPLICE	YES	7	0	0.78	1	0.2364	0.045	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,CTD-2143L24.1->chr5:9641417-9903938:-	SNU503_LARGE_INTESTINE	0.78	1	0.2814	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	NPLOC4--PDE6G	11	42	NPLOC4	2267	chr17:79603942:-	PDE6G	36207	chr17:79623640:-	INCL_NON_REF_SPLICE	YES	16	10	0.77	0.84	0.1238	0.4727	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	SNU503_LARGE_INTESTINE	0.77	0.84	0.5965	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	C15orf57--CBX3	12	15	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	50	28	0.35	0.49	0.1351	0.1688	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU503_LARGE_INTESTINE	0.35	0.49	0.3039	TRUE	267	562	48	632	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	KANSL1--ARL17B	14	5	KANSL1	2697	chr17:44301037:-	ARL17B	44367	chr17:44352784:-	ONLY_REF_SPLICE	YES	29	0	0.4	1	0.1576	0.0563	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SNU503_LARGE_INTESTINE	0.4	1	0.2139	TRUE	0	0	0	2	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	UBE4B--APITD1	11	10	UBE4B	1863	chr1:10093752:+	APITD1	43815	chr1:10500404:+	ONLY_REF_SPLICE	YES	72	81	0.23	0.21	0.1238	0.1126	UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,APITD1->apoptosis-inducing,_TAF9-like_domain_1,chr1:10490159-10512210:+	SNU503_LARGE_INTESTINE	0.21	0.23	0.2364	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	DNTTIP2--ARHGAP29	3	37	DNTTIP2	4651	chr1:94341824:-	ARHGAP29	46419	chr1:94616071:-	ONLY_REF_SPLICE	YES	198	0	0.17	1	0.0338	0.4165	DNTTIP2->chr1:94333373-94345474:-,deoxynucleotidyltransferase_terminal_interacting_protein_2,ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-	SNU503_LARGE_INTESTINE	0.17	1	0.4503	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	NPLOC4--PDE6G	3	35	NPLOC4	2267	chr17:79603942:-	PDE6G	37707	chr17:79620342:-	INCL_NON_REF_SPLICE	YES	16	12	0.7	0.76	0.0338	0.3939	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	SNU503_LARGE_INTESTINE	0.7	0.76	0.4277	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-255B23.4--CASC8	11	0	RP11-255B23.4	1060	chr8:128215408:-	CASC8	14642	chr8:128302305:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1238	0	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU503_LARGE_INTESTINE	1	1	0.1238	TRUE	0	9	0	3	9	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	MT-CO1--KRT6A	10	3	MT-CO1	1575	chrM:6478:+	KRT6A	5543	chr12:52887041:-	INCL_NON_REF_SPLICE	YES	12930	0	0	1	0.1126	0.0338	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	SNU503_LARGE_INTESTINE	0	1	0.1464	FALSE	7	19	2	8	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-680G10.1--GSE1	10	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	27	1	0.31	0.1126	0.0225	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU503_LARGE_INTESTINE	0.31	1	0.1351	TRUE	458	1351	185	561	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	CTD-2008L17.1--RP11-456O19.2	10	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.1126	0.0113	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SNU503_LARGE_INTESTINE	0.79	1	0.1239	FALSE	20	187	4	79	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	SLC25A42--ARMC6	10	0	SLC25A42	1117	chr19:19174924:+	ARMC6	18956	chr19:19153520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1126	0	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[4245],SLC25A42->chr19:19174808-19223697:+,solute_carrier_family_25_member_42,ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+	SNU503_LARGE_INTESTINE	1	1	0.1126	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	RAB40C--CAPN15	6	12	RAB40C	3209	chr16:646448:+	CAPN15	21038	chr16:596817:+	ONLY_REF_SPLICE	YES	28	14	0.39	0.56	0.0675	0.1351	LOCAL_REARRANGEMENT:+:[34721],RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+,CAPN15->calpain_15,chr16:577717-604636:+	SNU503_LARGE_INTESTINE	0.39	0.56	0.2026	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	UBE4B--APITD1	5	16	UBE4B	1863	chr1:10093752:+	APITD1	41742	chr1:10493899:+	ONLY_REF_SPLICE	YES	72	71	0.23	0.23	0.0563	0.1801	UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,APITD1->apoptosis-inducing,_TAF9-like_domain_1,chr1:10490159-10512210:+	SNU503_LARGE_INTESTINE	0.23	0.23	0.2364	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-255B23.4--CASC8	4	16	RP11-255B23.4	2379	chr8:128200042:-	CASC8	14642	chr8:128302305:-	INCL_NON_REF_SPLICE	YES	11	1	0.65	0.95	0.045	0.1801	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU503_LARGE_INTESTINE	0.65	0.95	0.2251	TRUE	0	3	0	2	3	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	TTC28--AP1B1	7	2	TTC28	2523	chr22:29025540:-	AP1B1	59249	chr22:29730399:-	ONLY_REF_SPLICE	YES	5	102	0.64	0.08	0.0788	0.0225	TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28,AP1B1->adaptor_related_protein_complex_1_beta_1_subunit,chr22:29723669-29819168:-	SNU503_LARGE_INTESTINE	0.08	0.64	0.1013	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	C15orf57--CBX3	4	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	49	29	0.25	0.36	0.045	0.1351	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU503_LARGE_INTESTINE	0.25	0.36	0.1801	TRUE	267	562	48	632	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	MT-TA--MT-TC	6	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0.045	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU503_LARGE_INTESTINE	1	1	0.1125	FALSE	462	80	0	856	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	NPLOC4--PDE6G	1	21	NPLOC4	2267	chr17:79603942:-	PDE6G	39395	chr17:79618180:-	ONLY_REF_SPLICE	NO	16	47	0.58	0.32	0.0113	0.2364	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	SNU503_LARGE_INTESTINE	0.32	0.58	0.2477	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-120D5.1--MID1	5	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	37	0.73	0.18	0.0563	0.0338	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU503_LARGE_INTESTINE	0.18	0.73	0.0901	FALSE	16	356	14	466	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	4	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.045	0.045	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU503_LARGE_INTESTINE	1	1	0.09	FALSE	515	4851	409	746	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	MT-CO1--KRT6A	4	3	MT-CO1	1591	chrM:6494:+	KRT6A	5561	chr12:52887023:-	INCL_NON_REF_SPLICE	YES	12389	0	0	1	0.045	0.0338	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	SNU503_LARGE_INTESTINE	0	1	0.0788	FALSE	7	19	2	8	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	MT-TA--MT-TC	3	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0.0675	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU503_LARGE_INTESTINE	1	1	0.1013	FALSE	462	80	0	856	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	CTD-2008L17.1--RP11-456O19.2	4	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.045	0.0113	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SNU503_LARGE_INTESTINE	0.62	1	0.0563	FALSE	33	240	4	98	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-444D3.1--SOX5	4	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.045	0.0113	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU503_LARGE_INTESTINE	1	1	0.0563	TRUE	477	1352	189	275	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	BPGM--AKR1B10	4	0	BPGM	1130	chr7:134331689:+	AKR1B10	11809	chr7:134215395:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.045	0	GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Lung=1,=1},BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+,AKR1B10->aldo-keto_reductase_family_1,_member_B10_(aldose_reductase),chr7:134212344-134226160:+	SNU503_LARGE_INTESTINE	1	1	0.045	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	GSE1--SLC7A5	4	0	GSE1	2365	chr16:85647004:+	SLC7A5	30231	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.045	0	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	SNU503_LARGE_INTESTINE	1	1	0.045	TRUE	0	0	0	3	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	SLC7A5--MT-ND1	4	0	SLC7A5	13719	chr16:87864490:-	MT-ND1	17596	chrM:3322:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.045	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU503_LARGE_INTESTINE	1	1	0.045	FALSE	0	0	0	11	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	UBE4B--APITD1	1	12	UBE4B	1863	chr1:10093752:+	APITD1	42557	chr1:10494714:+	ONLY_REF_SPLICE	YES	72	77	0.15	0.14	0.0113	0.1351	UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,APITD1->apoptosis-inducing,_TAF9-like_domain_1,chr1:10490159-10512210:+	SNU503_LARGE_INTESTINE	0.14	0.15	0.1464	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	RAB6B--RP11-200A1.1	3	3	RAB6B	4635	chr3:133583428:-	RP11-200A1.1	18944	chr3:134039762:+	ONLY_REF_SPLICE	YES	95	0	0.06	1	0.0338	0.0338	RAB6B->RAB6B,_member_RAS_oncogene_family,chr3:133543083-133614680:-,RP11-200A1.1->chr3:134032418-134040013:+	SNU503_LARGE_INTESTINE	0.06	1	0.0676	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-120D5.1--MID1	3	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	37	0.6	0.14	0.0338	0.0338	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU503_LARGE_INTESTINE	0.14	0.6	0.0676	FALSE	0	48	1	163	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-123O10.4--GRIP1	3	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0.0225	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU503_LARGE_INTESTINE	1	1	0.0563	FALSE	416	2512	207	587	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	ETF1--CTNNA1	3	1	ETF1	1468	chr5:137878522:-	CTNNA1	29160	chr5:138145727:+	ONLY_REF_SPLICE	YES	389	488	0.01	0.01	0.0338	0.0113	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},LOCAL_INVERSION:-:+:[67667],ETF1->chr5:137841784-137878989:-,eukaryotic_translation_termination_factor_1,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	SNU503_LARGE_INTESTINE	0.01	0.01	0.0451	FALSE	0	0	0	2	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-444D3.1--SOX5	3	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0.0113	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU503_LARGE_INTESTINE	1	1	0.0451	TRUE	274	363	69	150	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	AARS--RP11-529K1.2	3	0	AARS	12779	chr16:70294947:-	RP11-529K1.2	27481	chr16:70350045:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:-:[26097],AARS->alanyl-tRNA_synthetase,chr16:70286198-70323446:-,RP11-529K1.2->chr16:70349543-70380650:-	SNU503_LARGE_INTESTINE	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	ITM2B--RPL8	3	0	ITM2B	1155	chr13:48807448:+	RPL8	13003	chr8:146017273:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B,RPL8->chr8:146015150-146017972:-,ribosomal_protein_L8	SNU503_LARGE_INTESTINE	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU503_LARGE_INTESTINE	1	1	0.0338	FALSE	462	80	0	856	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0.045	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU503_LARGE_INTESTINE	1	1	0.0675	FALSE	407	2205	196	549	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0.045	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU503_LARGE_INTESTINE	1	1	0.0675	FALSE	467	2173	244	435	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	TBC1D32--CTD-2143L24.1	2	2	TBC1D32	27616	chr6:121484116:-	CTD-2143L24.1	48648	chr5:9884111:-	ONLY_REF_SPLICE	YES	7	0	0.36	1	0.0225	0.0225	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,CTD-2143L24.1->chr5:9641417-9903938:-	SNU503_LARGE_INTESTINE	0.36	1	0.045	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	AARS--RP11-529K1.2	2	1	AARS	12779	chr16:70294947:-	RP11-529K1.2	26363	chr16:70351276:-	ONLY_REF_SPLICE	YES	563	0	0.01	1	0.0225	0.0113	LOCAL_REARRANGEMENT:-:[26097],AARS->alanyl-tRNA_synthetase,chr16:70286198-70323446:-,RP11-529K1.2->chr16:70349543-70380650:-	SNU503_LARGE_INTESTINE	0.01	1	0.0338	FALSE	0	0	0	1	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	CTD-2008L17.1--RP11-456O19.2	2	1	CTD-2008L17.1	3828	chr18:53685010:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0225	0.0113	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SNU503_LARGE_INTESTINE	0.75	1	0.0338	FALSE	1	24	0	14	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	CDCA7L--STK31	2	0	CDCA7L	1304	chr7:21985399:-	STK31	28775	chr7:23792336:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	CDCA7L->cell_division_cycle_associated_7_like,chr7:21940518-21985702:-,STK31->chr7:23749786-23872132:+,serine/threonine_kinase_31	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	GBA2--RP1-27K12.2	2	0	GBA2	10354	chr9:35737745:-	RP1-27K12.2	16558	chr6:53438073:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GBA2->chr9:35736863-35749983:-,glucosylceramidase_beta_2,RP1-27K12.2->chr6:53426087-53481969:-	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	INTS9--HMBOX1	2	0	INTS9	1369	chr8:28747391:-	HMBOX1	30374	chr8:28821328:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LOCAL_INVERSION:-:+:[152],INTS9->chr8:28625178-28747759:-,integrator_complex_subunit_9,HMBOX1->chr8:28747911-28922281:+,homeobox_containing_1	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	NUDT1--HACE1	2	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	1	20	0	20	17	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	RUFY3--CNOT1	2	0	RUFY3	22654	chr4:71660611:+	CNOT1	49455	chr16:58592578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RUFY3->RUN_and_FYVE_domain_containing_3,chr4:71569921-71673032:+,CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	SCCPDH--SMYD3	2	0	SCCPDH	2679	chr1:246890306:+	SMYD3	36270	chr1:246093239:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	SCCPDH->chr1:246887349-246931439:+,saccharopine_dehydrogenase_(putative),SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	2	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	SLC25A42--ARMC6	2	0	SLC25A42	1048	chr19:19174855:+	ARMC6	18956	chr19:19153520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[4245],SLC25A42->chr19:19174808-19223697:+,solute_carrier_family_25_member_42,ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	SLC25A42--ARMC6	2	0	SLC25A42	1117	chr19:19174924:+	ARMC6	18961	chr19:19153525:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[4245],SLC25A42->chr19:19174808-19223697:+,solute_carrier_family_25_member_42,ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	SUMF2--CCT6A	2	0	SUMF2	3658	chr7:56140804:+	CCT6A	20326	chr7:56127962:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[13],SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	5	0	5	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	UBE4B--APITD1	2	0	UBE4B	1863	chr1:10093752:+	APITD1	46427	chr1:10511434:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,APITD1->apoptosis-inducing,_TAF9-like_domain_1,chr1:10490159-10512210:+	SNU503_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-255B23.4--CASC8	1	2	RP11-255B23.4	2131	chr8:128200290:-	CASC8	14642	chr8:128302305:-	ONLY_REF_SPLICE	NO	4	1	0.43	0.75	0.0113	0.0225	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU503_LARGE_INTESTINE	0.43	0.75	0.0338	TRUE	0	3	0	2	3	TRUE	ACH-000683
SNU503_LARGE_INTESTINE	ARHGEF2--AGPAT2	1	1	ARHGEF2	12762	chr1:155948156:-	AGPAT2	38103	chr9:139569259:-	ONLY_REF_SPLICE	YES	36	126	0.05	0.02	0.0113	0.0113	ARHGEF2->Oncogene{Bushman},Rho/Rac_guanine_nucleotide_exchange_factor_2,chr1:155916630-155976861:-,AGPAT2->1-acylglycerol-3-phosphate_O-acyltransferase_2,chr9:139567595-139581875:-	SNU503_LARGE_INTESTINE	0.02	0.05	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	ARL15--NDUFS4	1	1	ARL15	5950	chr5:53409032:-	NDUFS4	18000	chr5:52942063:+	ONLY_REF_SPLICE	YES	42	373	0.05	0.01	0.0113	0.0113	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	SNU503_LARGE_INTESTINE	0.01	0.05	0.0226	FALSE	5	61	2	9	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	DSCR3--TTC3	1	1	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	18	82	0.1	0.02	0.0113	0.0113	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	SNU503_LARGE_INTESTINE	0.02	0.1	0.0226	TRUE	0	9	0	44	1	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	LYPLAL1--RRP15	1	1	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	YES	288	133	0.01	0.01	0.0113	0.0113	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	SNU503_LARGE_INTESTINE	0.01	0.01	0.0226	FALSE	0	12	0	13	2	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-319G9.5--WWOX	1	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	19	1	0.1	0.0113	0.0113	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	SNU503_LARGE_INTESTINE	0.1	1	0.0226	FALSE	154	425	28	76	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	2	0	0.5	1	0.0113	0.0113	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU503_LARGE_INTESTINE	0.5	1	0.0226	TRUE	16	11	2	20	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	RP13-188A5.1--KLF8	1	1	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	NO	1	19	0.67	0.1	0.0113	0.0113	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	SNU503_LARGE_INTESTINE	0.1	0.67	0.0226	TRUE	10	78	6	20	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	ST6GAL1--VPS8	1	1	ST6GAL1	19420	chr3:186769134:+	VPS8	84028	chr3:184700354:+	ONLY_REF_SPLICE	YES	16	44	0.11	0.04	0.0113	0.0113	GTEx&tcga_normals:1/3694=0.03%,ST6GAL1->Oncogene{Bushman},ST6_beta-galactoside_alpha-2,6-sialyltransferase_1,chr3:186648274-186796341:+,VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+	SNU503_LARGE_INTESTINE	0.04	0.11	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	TMEM30A--HMGN3	1	1	TMEM30A	1567	chr6:75994118:-	HMGN3	16718	chr6:79924739:-	ONLY_REF_SPLICE	NO	207	167	0.01	0.01	0.0113	0.0113	TMEM30A->chr6:75962640-75994684:-,transmembrane_protein_30A,HMGN3->chr6:79910962-79944406:-,high_mobility_group_nucleosomal_binding_domain_3	SNU503_LARGE_INTESTINE	0.01	0.01	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000683
SNU503_LARGE_INTESTINE	ZNF584--RPS5	1	1	ZNF584	1159	chr19:58913029:+	RPS5	15147	chr19:58905864:+	ONLY_REF_SPLICE	YES	1	2639	0.67	0	0.0113	0.0113	LOCAL_REARRANGEMENT:+:[6698],ZNF584->chr19:58912871-58929694:+,zinc_finger_protein_584,RPS5->chr19:58897767-58906173:+,ribosomal_protein_S5	SNU503_LARGE_INTESTINE	0	0.67	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000683
HSC3_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	103	45	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.3219	0.5775	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HSC3_UPPER_AERODIGESTIVE_TRACT	0.99	1	1.8994	TRUE	508	994	45	981	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	64	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	751	3	0.08	0.96	0.8214	0.0128	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HSC3_UPPER_AERODIGESTIVE_TRACT	0.08	0.96	0.8342	TRUE	519	3926	326	965	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	LAMA3--S1PR2	31	29	LAMA3	65638	chr18:21501549:+	S1PR2	84244	chr19:10335623:-	ONLY_REF_SPLICE	YES	950	0	0.06	1	0.3979	0.3722	LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,S1PR2->chr19:10334520-10341948:-,sphingosine-1-phosphate_receptor_2	HSC3_UPPER_AERODIGESTIVE_TRACT	0.06	1	0.7701	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	34	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4364	0.0128	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.4492	FALSE	462	80	0	856	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	PLXDC1--TAF13	30	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.385	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.385	TRUE	7	10	0	216	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	19	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	28	79	0.54	0.29	0.2438	0.1797	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HSC3_UPPER_AERODIGESTIVE_TRACT	0.29	0.54	0.4235	TRUE	267	562	48	632	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	RP11-475J5.11--MT-TE	21	0	RP11-475J5.11	1050	chr5:99382203:+	MT-TE	4547	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2695	0	RP11-475J5.11->chr5:99382154-99382674:+,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.2695	FALSE	23	84	17	2	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	16	18	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	10	1	0.77	0.97	0.2053	0.231	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC3_UPPER_AERODIGESTIVE_TRACT	0.77	0.97	0.4363	FALSE	344	821	44	306	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	ZNF654--HMGB2	19	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2438	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.2438	TRUE	0	0	0	518	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	TES--CAV1	14	7	TES	3551	chr7:115874673:+	CAV1	16985	chr7:116199000:+	ONLY_REF_SPLICE	YES	235	5819	0.08	0	0.1797	0.0898	{Klijn_CCL:Lung=1,Head-Neck=1},TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	HSC3_UPPER_AERODIGESTIVE_TRACT	0	0.08	0.2695	TRUE	0	1	0	2	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	15	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1925	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.1925	FALSE	462	80	0	856	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	RPSAP52--HMGA2	12	12	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	12	863	0.67	0.03	0.154	0.154	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HSC3_UPPER_AERODIGESTIVE_TRACT	0.03	0.67	0.308	FALSE	0	59	0	125	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	2	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	117	0	0.12	1	0.1797	0.0257	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC3_UPPER_AERODIGESTIVE_TRACT	0.12	1	0.2054	FALSE	344	827	44	306	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	FLJ27365--KIF6	12	8	FLJ27365	9508	chr22:46505788:+	KIF6	37987	chr6:39398937:-	INCL_NON_REF_SPLICE	YES	9	0	0.69	1	0.154	0.1027	FLJ27365->chr22:46449749-46509808:+,KIF6->chr6:39297766-39693181:-,kinesin_family_member_6	HSC3_UPPER_AERODIGESTIVE_TRACT	0.69	1	0.2567	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	22	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	8850	0	0	1	0.1027	0.2823	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC3_UPPER_AERODIGESTIVE_TRACT	0	1	0.385	FALSE	344	827	44	306	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	30	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	46	0	0.44	1	0.077	0.385	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC3_UPPER_AERODIGESTIVE_TRACT	0.44	1	0.462	FALSE	344	826	44	306	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	AMOTL1--MACROD1	10	9	AMOTL1	5722	chr11:94528326:+	MACROD1	31446	chr11:63919865:-	ONLY_REF_SPLICE	YES	425	5	0.04	0.79	0.1283	0.1155	AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+,MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-	HSC3_UPPER_AERODIGESTIVE_TRACT	0.04	0.79	0.2438	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	30	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	24	0	0.59	1	0.0513	0.385	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC3_UPPER_AERODIGESTIVE_TRACT	0.59	1	0.4363	FALSE	344	826	44	306	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	30	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	32	0	0.51	1	0.0385	0.385	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC3_UPPER_AERODIGESTIVE_TRACT	0.51	1	0.4235	FALSE	344	826	44	306	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	FBRSL1--RP3-422G23.4	9	4	FBRSL1	19923	chr12:133153517:+	RP3-422G23.4	28953	chr6:138703637:+	ONLY_REF_SPLICE	YES	91	1	0.12	0.93	0.1155	0.0513	FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,RP3-422G23.4->chr6:138699042-138704212:+	HSC3_UPPER_AERODIGESTIVE_TRACT	0.12	0.93	0.1668	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1283	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.1283	TRUE	0	0	0	434	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-CO3	9	1	MT-ND3	1064	chrM:10122:+	MT-CO3	5089	chrM:9949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1155	0.0128	LOCAL_REARRANGEMENT:+:[69],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.1283	FALSE	2	2	0	11	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	6	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	27	80	0.36	0.16	0.077	0.1155	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HSC3_UPPER_AERODIGESTIVE_TRACT	0.16	0.36	0.1925	TRUE	267	562	48	632	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	10	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1245	0	0.01	1	0.0642	0.1283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC3_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.1925	FALSE	344	827	44	306	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	C11orf80--MAPKAPK5	6	5	C11orf80	4815	chr11:66526567:+	MAPKAPK5	32761	chr12:112318251:+	ONLY_REF_SPLICE	YES	75	82	0.13	0.12	0.077	0.0642	C11orf80->chr11:66511922-66610987:+,chromosome_11_open_reading_frame_80,MAPKAPK5->chr12:112279782-112334343:+,mitogen-activated_protein_kinase-activated_protein_kinase_5	HSC3_UPPER_AERODIGESTIVE_TRACT	0.12	0.13	0.1412	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	7	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0898	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0898	TRUE	0	0	0	434	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	RP11-475J5.11--MT-TE	7	0	RP11-475J5.11	1052	chr5:99382205:+	MT-TE	4550	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0898	0	RP11-475J5.11->chr5:99382154-99382674:+,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0898	FALSE	23	84	17	2	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	3	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	52	0	0.15	1	0.077	0.0385	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC3_UPPER_AERODIGESTIVE_TRACT	0.15	1	0.1155	FALSE	344	826	44	306	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.077	0.0128	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HSC3_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.0898	TRUE	465	1949	224	605	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	4	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1466	0	0.01	1	0.0642	0.0513	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC3_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.1155	FALSE	344	827	44	306	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0513	0.0898	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.1411	FALSE	407	2205	196	549	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	5	2	MT-ND1	1204	chrM:3510:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	NO	23	0	0.23	1	0.0642	0.0257	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HSC3_UPPER_AERODIGESTIVE_TRACT	0.23	1	0.0899	FALSE	114	26	4	85	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	4	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0513	0.077	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.1283	FALSE	515	4851	409	746	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	5	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0642	0.0128	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.077	FALSE	462	80	0	856	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	5	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0642	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0642	FALSE	183	104	9	328	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0642	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0642	FALSE	351	233	23	137	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	AMOTL1--MACROD1	4	3	AMOTL1	4572	chr11:94501726:+	MACROD1	31446	chr11:63919865:-	ONLY_REF_SPLICE	YES	350	5	0.02	0.58	0.0513	0.0385	AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+,MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-	HSC3_UPPER_AERODIGESTIVE_TRACT	0.02	0.58	0.0898	TRUE	0	0	0	1	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	4	2	MT-ND1	1227	chrM:3533:+	MT-RNR2	5001	chrM:1715:+	INCL_NON_REF_SPLICE	YES	22	0	0.21	1	0.0513	0.0257	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HSC3_UPPER_AERODIGESTIVE_TRACT	0.21	1	0.077	FALSE	114	26	4	85	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-CO3	4	2	MT-ND3	1026	chrM:10084:+	MT-CO3	4493	chrM:9353:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.75	0.0513	0.0257	LOCAL_REARRANGEMENT:+:[69],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HSC3_UPPER_AERODIGESTIVE_TRACT	0.75	1	0.077	FALSE	2	2	0	11	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	4	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0513	0.0257	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.077	FALSE	416	2512	207	587	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	FBRSL1--RP3-422G23.4	3	4	FBRSL1	19923	chr12:133153517:+	RP3-422G23.4	27716	chr6:138699084:+	INCL_NON_REF_SPLICE	YES	91	0	0.07	1	0.0385	0.0513	FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,RP3-422G23.4->chr6:138699042-138704212:+	HSC3_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.0898	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	4	0	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0513	FALSE	351	233	23	137	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	0	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0513	FALSE	462	80	0	856	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	3	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	50	0	0.11	1	0.0385	0.0385	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC3_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.077	FALSE	344	826	44	306	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	3	2	MT-ND1	1200	chrM:3506:+	MT-RNR2	5498	chrM:2212:+	INCL_NON_REF_SPLICE	NO	22	18567	0.19	0	0.0385	0.0257	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HSC3_UPPER_AERODIGESTIVE_TRACT	0	0.19	0.0642	FALSE	120	26	5	87	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	3	2	MT-ND1	1227	chrM:3533:+	MT-RNR2	5558	chrM:2272:+	INCL_NON_REF_SPLICE	YES	22	18186	0.19	0	0.0385	0.0257	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HSC3_UPPER_AERODIGESTIVE_TRACT	0	0.19	0.0642	FALSE	120	26	5	87	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	1	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0.0128	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0513	FALSE	462	80	0	856	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	RP11-475J5.11--MT-TE	3	1	RP11-475J5.11	1063	chr5:99382216:+	MT-TE	4532	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0.0128	RP11-475J5.11->chr5:99382154-99382674:+,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0513	FALSE	23	84	17	2	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0385	0.0128	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HSC3_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.0513	TRUE	458	1351	185	561	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	YWHAE--CRK	3	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	3426	79	0	0.05	0.0385	0.0128	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	HSC3_UPPER_AERODIGESTIVE_TRACT	0	0.05	0.0513	FALSE	6	50	7	115	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	C1orf63--ASH1L	3	0	C1orf63	8720	chr1:25594231:-	ASH1L	32285	chr1:155385714:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0385	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	3	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0385	FALSE	351	233	23	137	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	NCOR2--UBC	3	0	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0385	TRUE	52	148	13	33	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0385	TRUE	0	0	0	434	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	3	0	NPM1P24	1536	chr10:74677757:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0385	TRUE	0	0	0	434	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	RP11-475J5.11--MT-TE	3	0	RP11-475J5.11	1041	chr5:99382194:+	MT-TE	4547	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	RP11-475J5.11->chr5:99382154-99382674:+,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0385	FALSE	23	84	17	2	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	RP11-83A24.2--SETD7	2	2	RP11-83A24.2	1350	chr4:140374839:-	SETD7	27410	chr4:140468203:-	ONLY_REF_SPLICE	YES	8	73	0.33	0.05	0.0257	0.0257	LOCAL_REARRANGEMENT:-:[41907],RP11-83A24.2->chr4:140333081-140375188:-,SETD7->SET_domain_containing_lysine_methyltransferase_7,chr4:140417095-140527853:-	HSC3_UPPER_AERODIGESTIVE_TRACT	0.05	0.33	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0128	0.077	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0898	FALSE	467	2173	244	435	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	TGIF1--MYL12B	2	2	TGIF1	8043	chr18:3450503:+	MYL12B	20407	chr18:3272882:+	ONLY_REF_SPLICE	YES	156	430	0.03	0.01	0.0257	0.0257	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Lung=1},TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	HSC3_UPPER_AERODIGESTIVE_TRACT	0.01	0.03	0.0514	FALSE	0	2	0	6	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	METAP2--CDK17	2	1	METAP2	11611	chr12:95897937:+	CDK17	38080	chr12:96676377:-	ONLY_REF_SPLICE	YES	684	116	0	0.03	0.0257	0.0128	METAP2->Oncogene{Bushman},chr12:95867296-95909615:+,methionyl_aminopeptidase_2,CDK17->chr12:96672039-96794338:-,cyclin-dependent_kinase_17	HSC3_UPPER_AERODIGESTIVE_TRACT	0	0.03	0.0385	FALSE	0	0	0	1	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	ASB13--LTBP2	2	0	ASB13	2275	chr10:5694826:-	LTBP2	24434	chr14:74995825:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	ASB13->ankyrin_repeat_and_SOCS_box_containing_13,chr10:5680830-5708558:-,LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	CD44--ARNTL2	2	0	CD44	6502	chr11:35211612:+	ARNTL2	32011	chr12:27521195:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,ARNTL2->aryl_hydrocarbon_receptor_nuclear_translocator_like_2,chr12:27485787-27576241:+	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	CDH4--SEPT9	2	0	CDH4	2257	chr20:59829993:+	SEPT9	58971	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	CDH4->cadherin_4,chr20:59827482-60515673:+,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	DTWD2--TNFAIP8	2	0	DTWD2	4795	chr5:118264232:-	TNFAIP8	21409	chr5:118728511:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	DTWD2->DTW_domain_containing_2,chr5:118173017-118324240:-,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	FRMD6--SAV1	2	0	FRMD6	11179	chr14:52118714:+	SAV1	37253	chr14:51132337:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,SAV1->Oncogene{Bushman},chr14:51098776-51135049:-,salvador_family_WW_domain_containing_protein_1	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	HNRNPR--CDC42	2	0	HNRNPR	1126	chr1:23670704:-	CDC42	24999	chr1:22404922:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	NUP88--POLG	2	0	NUP88	16928	chr17:5289458:-	POLG	23113	chr15:89877144:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	NUP88->chr17:5264258-5323480:-,nucleoporin_88,POLG->chr15:89859534-89878092:-,polymerase_(DNA)_gamma,_catalytic_subunit	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	NVL--PGBD2	2	0	NVL	1317	chr1:224517773:-	PGBD2	36618	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	NVL->chr1:224415036-224518089:-,nuclear_VCP-like,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	TEX35--GAS5	2	0	TEX35	16062	chr1:178516298:+	GAS5	24763	chr1:173833644:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	TEX35->chr1:178482212-178517734:+,testis_expressed_35,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	TMEM184B--C11orf48	2	0	TMEM184B	4621	chr22:38641941:-	C11orf48	24726	chr11:62430805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	TMEM184B->chr22:38615298-38669040:-,transmembrane_protein_184B,C11orf48->chr11:62430287-62439727:-	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	WISP3--GTPBP4	2	0	WISP3	1334	chr6:112375608:+	GTPBP4	23770	chr10:1055469:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	WISP3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},WNT1_inducible_signaling_pathway_protein_3,chr6:112375275-112392171:+,GTPBP4->GTP_binding_protein_4,chr10:1034338-1065876:+	HSC3_UPPER_AERODIGESTIVE_TRACT	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	AMOTL1--MACROD1	1	2	AMOTL1	5722	chr11:94528326:+	MACROD1	35970	chr11:63782753:-	ONLY_REF_SPLICE	YES	425	56	0.01	0.05	0.0128	0.0257	AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+,MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-	HSC3_UPPER_AERODIGESTIVE_TRACT	0.01	0.05	0.0385	FALSE	0	0	0	1	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	APOLD1--RPH3A	1	1	APOLD1	1180	chr12:12879030:+	RPH3A	45790	chr12:113307698:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0128	0.0128	APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+,RPH3A->chr12:113008184-113336686:+,rabphilin_3A	HSC3_UPPER_AERODIGESTIVE_TRACT	0.67	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	CAPZA2--CSDE1	1	1	CAPZA2	3371	chr7:116502704:+	CSDE1	33401	chr1:115282346:-	ONLY_REF_SPLICE	YES	101	1298	0.02	0	0.0128	0.0128	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	HSC3_UPPER_AERODIGESTIVE_TRACT	0	0.02	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	CORO1C--CMTM7	1	1	CORO1C	5404	chr12:109094900:-	CMTM7	24190	chr3:32483332:+	ONLY_REF_SPLICE	YES	1382	14	0	0.12	0.0128	0.0128	CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	HSC3_UPPER_AERODIGESTIVE_TRACT	0	0.12	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	CSNK1D--FOXK2	1	1	CSNK1D	5009	chr17:80223562:-	FOXK2	26884	chr17:80521230:+	ONLY_REF_SPLICE	YES	228	43	0.01	0.04	0.0128	0.0128	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	HSC3_UPPER_AERODIGESTIVE_TRACT	0.01	0.04	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	DSCR3--TTC3	1	1	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	NO	37	43	0.05	0.04	0.0128	0.0128	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	HSC3_UPPER_AERODIGESTIVE_TRACT	0.04	0.05	0.0256	TRUE	0	9	0	44	1	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	F3--SPG7	1	1	F3	1264	chr1:95007093:-	SPG7	29909	chr16:89611056:+	ONLY_REF_SPLICE	YES	4455	70	0	0.03	0.0128	0.0128	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Head-Neck=2,Breast=1},F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	HSC3_UPPER_AERODIGESTIVE_TRACT	0	0.03	0.0256	FALSE	0	0	0	8	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	FBRSL1--RP3-422G23.4	1	1	FBRSL1	18790	chr12:133151150:+	RP3-422G23.4	28953	chr6:138703637:+	ONLY_REF_SPLICE	YES	85	1	0.02	0.67	0.0128	0.0128	FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,RP3-422G23.4->chr6:138699042-138704212:+	HSC3_UPPER_AERODIGESTIVE_TRACT	0.02	0.67	0.0256	TRUE	0	0	0	1	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	FRMD6--PYGL	1	1	FRMD6	5868	chr14:52037128:+	PYGL	36879	chr14:51404555:-	ONLY_REF_SPLICE	YES	307	411	0.01	0	0.0128	0.0128	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,PYGL->chr14:51324609-51411454:-,phosphorylase,_glycogen,_liver	HSC3_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	RSRC2--CLIP4	1	1	RSRC2	1153	chr12:123011395:-	CLIP4	25383	chr2:29344240:+	ONLY_REF_SPLICE	YES	118	34	0.02	0.06	0.0128	0.0128	RSRC2->arginine/serine-rich_coiled-coil_2,chr12:122989190-123011547:-,CLIP4->CAP-Gly_domain_containing_linker_protein_family_member_4,chr2:29320571-29412509:+	HSC3_UPPER_AERODIGESTIVE_TRACT	0.02	0.06	0.0256	TRUE	0	0	0	1	0	FALSE	ACH-000778
HSC3_UPPER_AERODIGESTIVE_TRACT	TGIF1--MYL12B	1	1	TGIF1	5335	chr18:3447795:+	MYL12B	20407	chr18:3272882:+	ONLY_REF_SPLICE	YES	27	430	0.07	0	0.0128	0.0128	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Lung=1},TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	HSC3_UPPER_AERODIGESTIVE_TRACT	0	0.07	0.0256	FALSE	0	1	0	1	0	FALSE	ACH-000778
CJM_SKIN	ZNF71--GPATCH1	422	104	ZNF71	2250	chr19:57112959:+	GPATCH1	30906	chr19:33608731:+	ONLY_REF_SPLICE	YES	0	6	1	0.99	3.5769	0.8815	ZNF71->chr19:57106632-57137849:+,zinc_finger_protein_71,GPATCH1->G-patch_domain_containing_1,chr19:33571786-33621448:+	CJM_SKIN	0.99	1	4.4584	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	HBEGF--H1F0	251	0	HBEGF	5934	chr5:139713828:-	H1F0	11694	chr22:38202473:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.1275	0	HBEGF->chr5:139712428-139726216:-,heparin_binding_EGF_like_growth_factor,H1F0->H1_histone_family_member_0,chr22:38201114-38203442:+	CJM_SKIN	1	1	2.1275	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	ADAP1--C7orf50	138	6	ADAP1	2012	chr7:994032:-	C7orf50	29696	chr7:1049779:-	ONLY_REF_SPLICE	YES	9	265	0.94	0.35	1.1697	0.0509	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_REARRANGEMENT:-:[41579],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	CJM_SKIN	0.35	0.94	1.2206	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	MICAL3--TOP3B	125	21	MICAL3	2388	chr22:18484159:-	TOP3B	66003	chr22:22330179:-	ONLY_REF_SPLICE	YES	17	15	0.9	0.91	1.0595	0.178	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,TOP3B->chr22:22311397-22337213:-,topoisomerase_(DNA)_III_beta	CJM_SKIN	0.9	0.91	1.2375	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	TIMM23B--LINC00843	122	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.98	1.0341	0.2034	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CJM_SKIN	0.98	1	1.2375	TRUE	508	994	45	981	0	FALSE	ACH-000458
CJM_SKIN	RP11-123O10.4--GRIP1	75	18	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6357	0.1526	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CJM_SKIN	1	1	0.7883	FALSE	416	2512	207	587	0	FALSE	ACH-000458
CJM_SKIN	SMARCC1--LCN2	74	0	SMARCC1	30620	chr3:47651556:-	LCN2	39245	chr9:130911762:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.6272	0	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,LCN2->chr9:130911350-130915734:+,lipocalin_2	CJM_SKIN	1	1	0.6272	TRUE	0	0	0	2	0	TRUE	ACH-000458
CJM_SKIN	TIMM23--RP11-464F9.1	67	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	182	8	0.27	0.89	0.5679	0.0085	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CJM_SKIN	0.27	0.89	0.5764	TRUE	519	3926	326	965	0	FALSE	ACH-000458
CJM_SKIN	PHLPP2--TXNL4B	40	8	PHLPP2	3951	chr16:71748415:-	TXNL4B	36765	chr16:72124685:-	ONLY_REF_SPLICE	YES	12	155	0.8	0.24	0.339	0.0678	PHLPP2->Oncogene{Bushman},PH_domain_and_leucine_rich_repeat_protein_phosphatase_2,chr16:71671738-71758604:-,TXNL4B->chr16:72078188-72128330:-,thioredoxin_like_4B	CJM_SKIN	0.24	0.8	0.4068	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	TXNRD2--AC008132.1	40	4	TXNRD2	13999	chr22:19882930:-	AC008132.1	29134	chr22:18727043:+	ONLY_REF_SPLICE	YES	73	0	0.38	1	0.339	0.0339	TXNRD2->chr22:19863040-19929341:-,thioredoxin_reductase_2,AC008132.1->chr22:18721427-18745407:+	CJM_SKIN	0.38	1	0.3729	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	ZNF507--ZNF383	34	21	ZNF507	5413	chr19:32845863:+	ZNF383	30144	chr19:37733371:+	ONLY_REF_SPLICE	YES	45	8	0.55	0.87	0.2882	0.178	HGNC_GENEFAM,PROTCLUST,ZNF507->chr19:32836500-32878573:+,zinc_finger_protein_507,ZNF383->chr19:37708828-37734828:+,zinc_finger_protein_383	CJM_SKIN	0.55	0.87	0.4662	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	RP11-114H23.1--RP11-114H23.2	31	24	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	1	0.98	0.98	0.2628	0.2034	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CJM_SKIN	0.98	0.98	0.4662	FALSE	81	155	12	160	0	FALSE	ACH-000458
CJM_SKIN	AC104389.28--HBE1	33	13	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.2797	0.1102	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CJM_SKIN	0.98	1	0.3899	TRUE	0	48	0	65	48	FALSE	ACH-000458
CJM_SKIN	MT-TA--MT-TC	33	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2797	0.0085	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CJM_SKIN	1	1	0.2882	FALSE	462	80	0	856	0	FALSE	ACH-000458
CJM_SKIN	NRIP1--AF127936.7	29	5	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.92	1	0.2458	0.0424	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CJM_SKIN	0.92	1	0.2882	FALSE	292	1546	117	613	0	FALSE	ACH-000458
CJM_SKIN	PLXDC1--TAF13	30	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2543	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	CJM_SKIN	1	1	0.2543	TRUE	7	10	0	216	0	FALSE	ACH-000458
CJM_SKIN	PRR16--CTD-2334D19.1	27	11	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	73	0	0.34	1	0.2289	0.0932	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CJM_SKIN	0.34	1	0.3221	FALSE	56	216	12	147	0	FALSE	ACH-000458
CJM_SKIN	SPG11--MRPL52	29	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2458	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	CJM_SKIN	1	1	0.2458	TRUE	38	11	0	19	0	FALSE	ACH-000458
CJM_SKIN	RPSAP52--HMGA2	26	7	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	254	187	0.11	0.15	0.2204	0.0593	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	CJM_SKIN	0.11	0.15	0.2797	FALSE	0	59	0	125	0	FALSE	ACH-000458
CJM_SKIN	RP11-680G10.1--GSE1	27	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	47	1	0.37	0.2289	0.0085	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CJM_SKIN	0.37	1	0.2374	TRUE	465	1949	224	605	0	FALSE	ACH-000458
CJM_SKIN	RHBDF2--RAB40B	26	1	RHBDF2	1438	chr17:74497435:-	RAB40B	26381	chr17:80616010:-	ONLY_REF_SPLICE	YES	0	22	1	0.55	0.2204	0.0085	RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila),RAB40B->RAB40B,_member_RAS_oncogene_family,chr17:80612849-80656604:-	CJM_SKIN	0.55	1	0.2289	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	SKI--PRKCZ	20	17	SKI	2041	chr1:2161174:+	PRKCZ	31396	chr1:2066701:+	ONLY_REF_SPLICE	YES	56	63	0.4	0.37	0.1695	0.1441	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.19%,GTEx_FI:{Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Lung=2,Artery_-_Tibial=1,Thyroid=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[43300],SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+,PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta	CJM_SKIN	0.37	0.4	0.3136	TRUE	0	1	0	1	0	TRUE	ACH-000458
CJM_SKIN	PRR16--CTD-2334D19.1	20	15	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	28	0	0.56	1	0.1695	0.1271	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CJM_SKIN	0.56	1	0.2966	FALSE	21	45	1	60	0	FALSE	ACH-000458
CJM_SKIN	EXT1--SAMD12	20	4	EXT1	2769	chr8:119122324:-	SAMD12	31808	chr8:119209971:-	ONLY_REF_SPLICE	YES	336	3	0.07	0.89	0.1695	0.0339	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:-:[77606],EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	CJM_SKIN	0.07	0.89	0.2034	TRUE	0	6	0	5	5	TRUE	ACH-000458
CJM_SKIN	RHBDF2--RAB40B	19	7	RHBDF2	1855	chr17:74497018:-	RAB40B	26381	chr17:80616010:-	ONLY_REF_SPLICE	YES	8	22	0.76	0.54	0.161	0.0593	RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila),RAB40B->RAB40B,_member_RAS_oncogene_family,chr17:80612849-80656604:-	CJM_SKIN	0.54	0.76	0.2203	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	SLMAP--RP11-755B10.2	16	9	SLMAP	12737	chr3:57850584:+	RP11-755B10.2	39636	chr3:57640351:+	ONLY_REF_SPLICE	YES	49	0	0.34	1	0.1356	0.0763	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,RP11-755B10.2->chr3:57614537-57640645:+	CJM_SKIN	0.34	1	0.2119	TRUE	0	1	0	1	1	TRUE	ACH-000458
CJM_SKIN	SLC1A5--MT-ND4L	15	5	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	777	0	0.03	1	0.1271	0.0424	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CJM_SKIN	0.03	1	0.1695	FALSE	0	0	0	189	0	FALSE	ACH-000458
CJM_SKIN	MICAL3--TOP3B	13	7	MICAL3	1279	chr22:18507047:-	TOP3B	66003	chr22:22330179:-	ONLY_REF_SPLICE	YES	10	15	0.67	0.57	0.1102	0.0593	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,TOP3B->chr22:22311397-22337213:-,topoisomerase_(DNA)_III_beta	CJM_SKIN	0.57	0.67	0.1695	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	C15orf57--CBX3	13	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	15	25	0.56	0.43	0.1102	0.0509	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CJM_SKIN	0.43	0.56	0.1611	TRUE	267	562	48	632	0	FALSE	ACH-000458
CJM_SKIN	MICAL3--TOP3B	9	21	MICAL3	2388	chr22:18484159:-	TOP3B	65623	chr22:22330559:-	ONLY_REF_SPLICE	YES	17	8	0.64	0.79	0.0763	0.178	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,TOP3B->chr22:22311397-22337213:-,topoisomerase_(DNA)_III_beta	CJM_SKIN	0.64	0.79	0.2543	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	MT-ND6--MT-TE	11	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0932	0.0678	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CJM_SKIN	0.95	1	0.161	FALSE	499	1288	110	792	0	FALSE	ACH-000458
CJM_SKIN	RP11-123O10.4--GRIP1	11	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0932	0.0593	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CJM_SKIN	1	1	0.1525	FALSE	93	270	15	244	0	FALSE	ACH-000458
CJM_SKIN	RP11-96H19.1--RP11-446N19.1	10	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	2	0.91	0.91	0.0848	0.0932	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CJM_SKIN	0.91	0.91	0.178	FALSE	515	4851	409	746	0	FALSE	ACH-000458
CJM_SKIN	RP11-114H23.1--RP11-114H23.2	7	22	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	1	1	0.97	0.97	0.0593	0.1865	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CJM_SKIN	0.97	0.97	0.2458	FALSE	81	155	12	160	0	FALSE	ACH-000458
CJM_SKIN	SLMAP--RP11-755B10.2	10	6	SLMAP	12596	chr3:57850443:+	RP11-755B10.2	39636	chr3:57640351:+	ONLY_REF_SPLICE	YES	51	0	0.24	1	0.0848	0.0509	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,RP11-755B10.2->chr3:57614537-57640645:+	CJM_SKIN	0.24	1	0.1357	TRUE	0	1	0	1	1	TRUE	ACH-000458
CJM_SKIN	MT-TA--MT-TC	11	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0932	0.0085	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CJM_SKIN	1	1	0.1017	FALSE	462	80	0	856	0	FALSE	ACH-000458
CJM_SKIN	PHLPP2--TXNL4B	11	1	PHLPP2	1933	chr16:71757672:-	TXNL4B	36765	chr16:72124685:-	ONLY_REF_SPLICE	YES	19	155	0.39	0.07	0.0932	0.0085	PHLPP2->Oncogene{Bushman},PH_domain_and_leucine_rich_repeat_protein_phosphatase_2,chr16:71671738-71758604:-,TXNL4B->chr16:72078188-72128330:-,thioredoxin_like_4B	CJM_SKIN	0.07	0.39	0.1017	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0932	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CJM_SKIN	1	1	0.0932	TRUE	0	0	0	434	0	FALSE	ACH-000458
CJM_SKIN	FOSL1--DRAP1	8	10	FOSL1	1333	chr11:65667712:-	DRAP1	9128	chr11:65687251:+	ONLY_REF_SPLICE	YES	1708	1372	0.01	0.01	0.0678	0.0848	LOCAL_INVERSION:-:+:[18684],FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	CJM_SKIN	0.01	0.01	0.1526	TRUE	0	0	0	6	0	FALSE	ACH-000458
CJM_SKIN	SLC7A5--MT-ND4L	9	6	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2766	0	0.01	1	0.0763	0.0509	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CJM_SKIN	0.01	1	0.1272	FALSE	0	0	0	23	0	FALSE	ACH-000458
CJM_SKIN	REV3L--RPL28	10	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0848	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CJM_SKIN	1	1	0.0848	TRUE	22	156	2	142	0	FALSE	ACH-000458
CJM_SKIN	MT-ND6--MT-TE	8	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0678	0.0593	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CJM_SKIN	1	1	0.1271	FALSE	499	1288	110	792	0	FALSE	ACH-000458
CJM_SKIN	MT-ND6--MT-TE	6	15	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0.1271	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CJM_SKIN	1	1	0.178	FALSE	499	1288	110	792	0	FALSE	ACH-000458
CJM_SKIN	MT-ND6--MT-TE	9	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0763	0.0254	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CJM_SKIN	1	1	0.1017	FALSE	499	1288	110	792	0	FALSE	ACH-000458
CJM_SKIN	RP11-120D5.1--MID1	9	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	35	0.86	0.26	0.0763	0.0254	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CJM_SKIN	0.26	0.86	0.1017	FALSE	16	356	14	466	0	FALSE	ACH-000458
CJM_SKIN	AC104389.28--HBE1	6	13	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.0509	0.1102	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CJM_SKIN	0.95	1	0.1611	TRUE	0	35	0	55	35	FALSE	ACH-000458
CJM_SKIN	CTD-2337A12.1--CAST	9	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	59	1	0.14	0.0763	0.0085	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	CJM_SKIN	0.14	1	0.0848	TRUE	347	1186	183	220	0	FALSE	ACH-000458
CJM_SKIN	RP11-96H19.1--RP11-446N19.1	6	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.0509	0.0932	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CJM_SKIN	0.89	1	0.1441	FALSE	407	2205	196	549	0	FALSE	ACH-000458
CJM_SKIN	RP11-680G10.1--GSE1	8	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	17	1	0.37	0.0678	0.017	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CJM_SKIN	0.37	1	0.0848	TRUE	458	1351	185	561	0	FALSE	ACH-000458
CJM_SKIN	C15orf57--CBX3	7	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	14	27	0.46	0.31	0.0593	0.0424	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CJM_SKIN	0.31	0.46	0.1017	TRUE	267	562	48	632	0	FALSE	ACH-000458
CJM_SKIN	FOXA2--MT-CO3	8	0	FOXA2	4366	chr20:22562691:-	MT-CO3	8620	chrM:9412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0678	0	FOXA2->chr20:22561643-22566093:-,forkhead_box_A2,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CJM_SKIN	1	1	0.0678	FALSE	0	0	0	3	0	FALSE	ACH-000458
CJM_SKIN	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0678	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CJM_SKIN	1	1	0.0678	FALSE	462	80	0	856	0	FALSE	ACH-000458
CJM_SKIN	MT-ND6--MT-TE	3	18	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0254	0.1526	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CJM_SKIN	0.95	1	0.178	FALSE	499	1288	110	792	0	FALSE	ACH-000458
CJM_SKIN	RP11-114H23.1--RP11-114H23.2	5	10	RP11-114H23.1	1242	chr12:76377554:-	RP11-114H23.2	12403	chr12:76088755:-	INCL_NON_REF_SPLICE	YES	2	1	0.88	0.94	0.0424	0.0848	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CJM_SKIN	0.88	0.94	0.1272	FALSE	81	155	12	160	0	FALSE	ACH-000458
CJM_SKIN	PRR16--CTD-2334D19.1	3	17	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	12267	chr5:120116913:+	INCL_NON_REF_SPLICE	YES	28	0	0.42	1	0.0254	0.1441	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CJM_SKIN	0.42	1	0.1695	FALSE	1	2	0	4	0	FALSE	ACH-000458
CJM_SKIN	EPC2--MBD5	7	0	EPC2	1731	chr2:149402739:+	MBD5	46234	chr2:149260005:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0593	0	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},EPC2->chr2:149402009-149545130:+,enhancer_of_polycomb_homolog_2,MBD5->chr2:148778580-149275805:+,methyl-CpG_binding_domain_protein_5	CJM_SKIN	1	1	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	NRIP1--AF127936.7	5	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.48	1	0.0424	0.0593	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CJM_SKIN	0.48	1	0.1017	FALSE	164	806	69	479	0	FALSE	ACH-000458
CJM_SKIN	RP11-115J23.1--RP11-466I1.1	6	3	RP11-115J23.1	4468	chr11:29059363:+	RP11-466I1.1	12826	chr11:29233202:+	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.0509	0.0254	NEIGHBORS[96135],RP11-115J23.1->chr11:28724162-29085368:+,RP11-466I1.1->chr11:29181503-29288281:+	CJM_SKIN	0.6	1	0.0763	FALSE	0	0	0	4	0	FALSE	ACH-000458
CJM_SKIN	NRIP1--AF127936.7	5	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.46	1	0.0424	0.0509	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CJM_SKIN	0.46	1	0.0933	FALSE	125	705	46	456	0	FALSE	ACH-000458
CJM_SKIN	RP11-96H19.1--RP11-446N19.1	3	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.94	0.88	0.0254	0.1017	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CJM_SKIN	0.88	0.94	0.1271	FALSE	467	2173	244	435	0	FALSE	ACH-000458
CJM_SKIN	RP11-1L12.3--SLC5A12	5	2	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	11	0	0.39	1	0.0424	0.017	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	CJM_SKIN	0.39	1	0.0594	TRUE	3	101	0	60	0	FALSE	ACH-000458
CJM_SKIN	ALDOA--LCN2	5	0	ALDOA	7414	chr16:30077186:+	LCN2	15388	chr9:130911731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,LCN2->chr9:130911350-130915734:+,lipocalin_2	CJM_SKIN	1	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	ENO1--H1F0	5	0	ENO1	10869	chr1:8924000:-	H1F0	16865	chr22:38201627:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,H1F0->H1_histone_family_member_0,chr22:38201114-38203442:+	CJM_SKIN	1	1	0.0424	TRUE	0	0	0	4	0	TRUE	ACH-000458
CJM_SKIN	SLMAP--RP11-755B10.4	5	0	SLMAP	12596	chr3:57850443:+	RP11-755B10.4	40588	chr3:57586470:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0424	0	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,RP11-755B10.4->chr3:57583442-57586654:+	CJM_SKIN	1	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	PRR16--CTD-2334D19.1	2	11	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	73	0	0.15	1	0.017	0.0932	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CJM_SKIN	0.15	1	0.1102	FALSE	1	13	0	24	0	FALSE	ACH-000458
CJM_SKIN	SLMAP--RP11-755B10.2	2	9	SLMAP	13172	chr3:57851019:+	RP11-755B10.2	39636	chr3:57640351:+	ONLY_REF_SPLICE	YES	49	0	0.18	1	0.017	0.0763	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,RP11-755B10.2->chr3:57614537-57640645:+	CJM_SKIN	0.18	1	0.0933	TRUE	0	1	0	1	1	TRUE	ACH-000458
CJM_SKIN	RP11-108K3.1--GLDN	3	4	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0.0339	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CJM_SKIN	1	1	0.0593	FALSE	0	30	1	55	0	FALSE	ACH-000458
CJM_SKIN	RP11-108K3.1--GLDN	3	4	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0.0339	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CJM_SKIN	1	1	0.0593	FALSE	0	19	0	46	0	FALSE	ACH-000458
CJM_SKIN	RP11-120D5.1--MID1	3	4	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	2	35	0.78	0.17	0.0254	0.0339	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CJM_SKIN	0.17	0.78	0.0593	FALSE	0	9	0	55	0	FALSE	ACH-000458
CJM_SKIN	SLMAP--RP11-755B10.4	4	0	SLMAP	12737	chr3:57850584:+	RP11-755B10.4	39904	chr3:57585786:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,RP11-755B10.4->chr3:57583442-57586654:+	CJM_SKIN	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	RP11-96H19.1--RP11-446N19.1	1	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	2	0	0.86	1	0.0085	0.0932	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CJM_SKIN	0.86	1	0.1017	FALSE	275	511	55	178	0	FALSE	ACH-000458
CJM_SKIN	NCOR2--UBC	3	1	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	10	37	0.29	0.1	0.0254	0.0085	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	CJM_SKIN	0.1	0.29	0.0339	TRUE	145	312	16	51	0	FALSE	ACH-000458
CJM_SKIN	RHBDF2--RAB40B	3	1	RHBDF2	1438	chr17:74497435:-	RAB40B	25953	chr17:80616438:-	ONLY_REF_SPLICE	YES	0	21	1	0.16	0.0254	0.0085	RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila),RAB40B->RAB40B,_member_RAS_oncogene_family,chr17:80612849-80656604:-	CJM_SKIN	0.16	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	RPL22--ACOT7	3	1	RPL22	7028	chr1:6257712:-	ACOT7	33637	chr1:6324755:-	ONLY_REF_SPLICE	YES	1011	300	0	0.01	0.0254	0.0085	LOCAL_REARRANGEMENT:-:[54880],RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22,ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-	CJM_SKIN	0	0.01	0.0339	FALSE	0	0	0	1	0	FALSE	ACH-000458
CJM_SKIN	SLC7A5--ACTG1	3	1	SLC7A5	8068	chr16:87871474:-	ACTG1	21178	chr17:79478603:-	INCL_NON_REF_SPLICE	YES	2890	5026	0	0	0.0254	0.0085	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	CJM_SKIN	0	0	0.0339	FALSE	0	0	0	11	0	FALSE	ACH-000458
CJM_SKIN	FOSL1--MT-ATP6	3	0	FOSL1	4819	chr11:65660305:-	MT-ATP6	9160	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CJM_SKIN	1	1	0.0254	FALSE	0	0	0	2	0	FALSE	ACH-000458
CJM_SKIN	FOSL1--MT-ATP6	3	0	FOSL1	4814	chr11:65660310:-	MT-ATP6	9153	chrM:9075:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CJM_SKIN	1	1	0.0254	FALSE	0	0	0	2	0	FALSE	ACH-000458
CJM_SKIN	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CJM_SKIN	1	1	0.0254	TRUE	0	0	0	434	0	FALSE	ACH-000458
CJM_SKIN	NTN4--RP11-536G4.2	3	0	NTN4	3897	chr12:96180717:-	RP11-536G4.2	22162	chr12:96189435:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_REARRANGEMENT:-:[4193],NTN4->chr12:96051583-96184930:-,netrin_4,RP11-536G4.2->chr12:96189123-96252617:-	CJM_SKIN	1	1	0.0254	TRUE	0	1	0	1	1	TRUE	ACH-000458
CJM_SKIN	RHBDF2--RAB40B	1	8	RHBDF2	1855	chr17:74497018:-	RAB40B	25953	chr17:80616438:-	ONLY_REF_SPLICE	NO	8	21	0.53	0.3	0.0085	0.0678	RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila),RAB40B->RAB40B,_member_RAS_oncogene_family,chr17:80612849-80656604:-	CJM_SKIN	0.3	0.53	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	SLMAP--RP11-755B10.4	3	0	SLMAP	13172	chr3:57851019:+	RP11-755B10.4	40588	chr3:57586470:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,RP11-755B10.4->chr3:57583442-57586654:+	CJM_SKIN	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	SND1--ZNF800	3	0	SND1	8159	chr7:127339007:+	ZNF800	45001	chr7:127017383:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	GTEx&tcga_normals:1/3694=0.03%,SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1,ZNF800->chr7:126986844-127071978:-,zinc_finger_protein_800	CJM_SKIN	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	SKI--PRKCZ	1	7	SKI	2041	chr1:2161174:+	PRKCZ	32482	chr1:2075649:+	ONLY_REF_SPLICE	NO	56	71	0.12	0.1	0.0085	0.0593	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.19%,GTEx_FI:{Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Lung=2,Artery_-_Tibial=1,Thyroid=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[43300],SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+,PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta	CJM_SKIN	0.1	0.12	0.0678	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	NCOR2--UBC	2	2	NCOR2	21671	chr12:124882665:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	133	37	0.03	0.1	0.017	0.017	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	CJM_SKIN	0.03	0.1	0.034	TRUE	30	26	0	16	0	FALSE	ACH-000458
CJM_SKIN	RP11-120D5.1--MID1	2	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	35	0.8	0.1	0.017	0.017	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CJM_SKIN	0.1	0.8	0.034	FALSE	0	48	1	163	0	FALSE	ACH-000458
CJM_SKIN	RP11-155G15.2--RP11-1E3.1	2	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0.0085	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	CJM_SKIN	1	1	0.0255	FALSE	46	201	11	112	0	FALSE	ACH-000458
CJM_SKIN	RP11-155G15.2--RP11-1E3.1	2	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	7991	chr5:96856933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0.0085	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	CJM_SKIN	1	1	0.0255	FALSE	0	1	1	12	0	FALSE	ACH-000458
CJM_SKIN	RPSAP52--HMGA2	1	5	RPSAP52	1132	chr12:66220623:-	HMGA2	10409	chr12:66232299:+	ONLY_REF_SPLICE	YES	254	108	0.02	0.05	0.0085	0.0424	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	CJM_SKIN	0.02	0.05	0.0509	FALSE	0	2	0	7	0	FALSE	ACH-000458
CJM_SKIN	CSNK2A1--RBCK1	2	0	CSNK2A1	1150	chr20:524316:-	RBCK1	29473	chr20:398170:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[47506],CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-,RBCK1->RANBP2-type_and_C3HC4-type_zinc_finger_containing_1,chr20:388142-411610:+	CJM_SKIN	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	EIF2S3--ACOT9	2	0	EIF2S3	4392	chrX:24078299:+	ACOT9	27222	chrX:23740870:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},EIF2S3->chrX:24072833-24096088:+,eukaryotic_translation_initiation_factor_2_subunit_gamma,ACOT9->acyl-CoA_thioesterase_9,chrX:23720370-23784592:-	CJM_SKIN	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	GPATCH2L--CHMP1A	2	0	GPATCH2L	16680	chr14:76662315:+	CHMP1A	44068	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},GPATCH2L->G-patch_domain_containing_2_like,chr14:76618259-76720685:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	CJM_SKIN	1	1	0.017	TRUE	0	1	0	1	0	TRUE	ACH-000458
CJM_SKIN	PRR16--CSNK1G3	2	0	PRR16	1368	chr5:119800340:+	CSNK1G3	13741	chr5:122881111:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	PRR16->chr5:119799973-120023027:+,proline_rich_16,CSNK1G3->casein_kinase_1_gamma_3,chr5:122847793-122952739:+	CJM_SKIN	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	SLMAP--RP11-755B10.4	2	0	SLMAP	12737	chr3:57850584:+	RP11-755B10.4	40588	chr3:57586470:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,RP11-755B10.4->chr3:57583442-57586654:+	CJM_SKIN	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	ZNF71--GPATCH1	1	4	ZNF71	2250	chr19:57112959:+	GPATCH1	33199	chr19:33616011:+	ONLY_REF_SPLICE	YES	0	97	1	0.05	0.0085	0.0339	ZNF71->chr19:57106632-57137849:+,zinc_finger_protein_71,GPATCH1->G-patch_domain_containing_1,chr19:33571786-33621448:+	CJM_SKIN	0.05	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000458
CJM_SKIN	RP11-108K3.1--GLDN	1	3	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0085	0.0254	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CJM_SKIN	1	1	0.0339	FALSE	1	20	0	46	0	FALSE	ACH-000458
CJM_SKIN	RP11-108K3.1--GLDN	1	3	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0085	0.0254	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CJM_SKIN	1	1	0.0339	FALSE	0	14	0	30	0	FALSE	ACH-000458
CJM_SKIN	RP11-108K3.1--GLDN	1	3	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0085	0.0254	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CJM_SKIN	1	1	0.0339	FALSE	0	14	0	30	0	FALSE	ACH-000458
CJM_SKIN	RP11-115J23.1--RP11-466I1.1	1	3	RP11-115J23.1	2304	chr11:28763455:+	RP11-466I1.1	12826	chr11:29233202:+	ONLY_REF_SPLICE	YES	7	0	0.36	1	0.0085	0.0254	NEIGHBORS[96135],RP11-115J23.1->chr11:28724162-29085368:+,RP11-466I1.1->chr11:29181503-29288281:+	CJM_SKIN	0.36	1	0.0339	FALSE	0	0	0	3	0	FALSE	ACH-000458
CJM_SKIN	NCOR2--UBC	1	2	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	122	37	0.02	0.07	0.0085	0.017	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	CJM_SKIN	0.02	0.07	0.0255	TRUE	52	148	13	33	0	FALSE	ACH-000458
CJM_SKIN	RP11-681L8.1--STPG2	1	2	RP11-681L8.1	2417	chr4:98493799:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0085	0.017	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	CJM_SKIN	1	1	0.0255	TRUE	0	2	0	5	2	TRUE	ACH-000458
CJM_SKIN	RP11-681L8.1--STPG2	1	2	RP11-681L8.1	3504	chr4:98313793:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0085	0.017	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	CJM_SKIN	1	1	0.0255	TRUE	0	10	0	4	10	TRUE	ACH-000458
CJM_SKIN	ADAM17--YWHAQ	1	1	ADAM17	1284	chr2:9695638:-	YWHAQ	29763	chr2:9731644:-	ONLY_REF_SPLICE	YES	90	485	0.02	0	0.0085	0.0085	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[28180],ADAM17->ADAM_metallopeptidase_domain_17,chr2:9628615-9695921:-,YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta	CJM_SKIN	0	0.02	0.017	FALSE	0	4	0	5	2	FALSE	ACH-000458
CJM_SKIN	C7orf50--SUN1	1	1	C7orf50	3078	chr7:1166893:-	SUN1	41103	chr7:908986:+	ONLY_REF_SPLICE	NO	84	196	0.02	0.01	0.0085	0.0085	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	CJM_SKIN	0.01	0.02	0.017	FALSE	0	0	0	2	0	FALSE	ACH-000458
CJM_SKIN	EIF4A3--CSDE1	1	1	EIF4A3	3531	chr17:78115581:-	CSDE1	21114	chr1:115282346:-	ONLY_REF_SPLICE	YES	410	550	0	0	0.0085	0.0085	EIF4A3->chr17:78109013-78120982:-,eukaryotic_translation_initiation_factor_4A3,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	CJM_SKIN	0	0	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000458
CJM_SKIN	KIAA0368--PTGR1	1	1	KIAA0368	3346	chr9:114235177:-	PTGR1	59824	chr9:114348445:-	ONLY_REF_SPLICE	YES	27	353	0.07	0.01	0.0085	0.0085	LOCAL_REARRANGEMENT:-:[64977],KIAA0368->KIAA0368,chr9:114122972-114247025:-,PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	CJM_SKIN	0.01	0.07	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000458
CJM_SKIN	NAPG--VAPA	1	1	NAPG	1254	chr18:10526155:+	VAPA	28984	chr18:9950392:+	ONLY_REF_SPLICE	NO	71	598	0.03	0	0.0085	0.0085	NAPG->NSF_attachment_protein_gamma,chr18:10525902-10552758:+,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	CJM_SKIN	0	0.03	0.017	FALSE	0	1	0	3	0	FALSE	ACH-000458
CJM_SKIN	NAPG--VAPA	1	1	NAPG	1254	chr18:10526155:+	VAPA	21938	chr18:9931807:+	ONLY_REF_SPLICE	YES	71	660	0.03	0	0.0085	0.0085	NAPG->NSF_attachment_protein_gamma,chr18:10525902-10552758:+,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	CJM_SKIN	0	0.03	0.017	FALSE	0	1	0	2	0	FALSE	ACH-000458
CJM_SKIN	NCOR2--UBC	1	1	NCOR2	3484	chr12:125002686:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	29	37	0.06	0.05	0.0085	0.0085	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	CJM_SKIN	0.05	0.06	0.017	TRUE	7	26	3	12	0	FALSE	ACH-000458
CJM_SKIN	NCOR2--UBC	1	1	NCOR2	2329	chr12:125020111:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	25	37	0.07	0.05	0.0085	0.0085	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	CJM_SKIN	0.05	0.07	0.017	TRUE	48	117	12	14	0	FALSE	ACH-000458
CJM_SKIN	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	13	7	0.13	0.22	0.0085	0.0085	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CJM_SKIN	0.13	0.22	0.017	FALSE	7	44	2	41	0	FALSE	ACH-000458
CJM_SKIN	ZDHHC21--NFIB	1	1	ZDHHC21	12398	chr9:14619637:-	NFIB	29419	chr9:14307519:-	ONLY_REF_SPLICE	NO	27	45	0.07	0.04	0.0085	0.0085	ZDHHC21->chr9:14611069-14693469:-,zinc_finger_DHHC-type_containing_21,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	CJM_SKIN	0.04	0.07	0.017	TRUE	1	0	0	1	0	FALSE	ACH-000458
RMUGS_OVARY	TIMM23B--LINC00843	67	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.823	0.2211	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RMUGS_OVARY	1	1	1.0441	TRUE	508	994	45	981	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND4--MT-ND4L	4	152	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	7	0	0.96	1	0.0491	1.8672	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMUGS_OVARY	0.96	1	1.9163	FALSE	344	826	44	306	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND4--MT-ND4L	3	153	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	17	0	0.9	1	0.0369	1.8795	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMUGS_OVARY	0.9	1	1.9164	FALSE	344	826	44	306	0	FALSE	ACH-000701
RMUGS_OVARY	MT-TA--MT-TC	38	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4668	0.0369	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RMUGS_OVARY	1	1	0.5037	FALSE	462	80	0	856	0	FALSE	ACH-000701
RMUGS_OVARY	TIMM23--RP11-464F9.1	36	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	169	0	0.18	1	0.4422	0.0246	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RMUGS_OVARY	0.18	1	0.4668	TRUE	519	3926	326	965	0	FALSE	ACH-000701
RMUGS_OVARY	RP11-96H19.1--RP11-446N19.1	30	14	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	1	0.94	0.98	0.3685	0.172	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RMUGS_OVARY	0.94	0.98	0.5405	FALSE	515	4851	409	746	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND4--MT-ND4L	3	121	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	3	0	0.98	1	0.0369	1.4864	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMUGS_OVARY	0.98	1	1.5233	FALSE	344	826	44	306	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND4--MT-ND4L	19	49	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	11638	1	0.01	0.99	0.2334	0.6019	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMUGS_OVARY	0.01	0.99	0.8353	FALSE	328	800	43	304	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND4--MT-ND4L	5	99	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.0614	1.2161	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMUGS_OVARY	0.97	1	1.2775	FALSE	344	821	44	306	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND6--MT-TE	28	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.344	0.0614	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RMUGS_OVARY	0.97	1	0.4054	FALSE	499	1288	110	792	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND4--MT-ND4L	3	92	MT-ND4	1763	chrM:11522:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	5844	0	0.02	1	0.0369	1.1301	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMUGS_OVARY	0.02	1	1.167	FALSE	344	827	44	306	0	FALSE	ACH-000701
RMUGS_OVARY	RP11-123O10.4--GRIP1	20	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2457	0.0246	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RMUGS_OVARY	1	1	0.2703	FALSE	416	2512	207	587	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND4--MT-ND4L	10	36	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	6446	1	0.01	0.98	0.1228	0.4422	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMUGS_OVARY	0.01	0.98	0.565	FALSE	344	827	44	306	0	FALSE	ACH-000701
RMUGS_OVARY	RP11-680G10.1--GSE1	18	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2211	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RMUGS_OVARY	1	1	0.2211	TRUE	465	1949	224	605	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND4--MT-ND4L	4	49	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1020	1	0.05	0.98	0.0491	0.6019	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMUGS_OVARY	0.05	0.98	0.651	FALSE	344	827	44	306	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND6--MT-TE	15	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1843	0.0614	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RMUGS_OVARY	0.95	1	0.2457	FALSE	499	1288	110	792	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND6--MT-TE	14	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.172	0.0983	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RMUGS_OVARY	0.92	1	0.2703	FALSE	499	1288	110	792	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND4--MT-ND4L	7	35	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	40	1	0.51	0.98	0.086	0.4299	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMUGS_OVARY	0.51	0.98	0.5159	FALSE	344	826	44	306	0	FALSE	ACH-000701
RMUGS_OVARY	RP11-96H19.1--RP11-446N19.1	10	18	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.9	1	0.1228	0.2211	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RMUGS_OVARY	0.9	1	0.3439	FALSE	407	2205	196	549	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND4--MT-ND4L	3	40	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0.4914	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMUGS_OVARY	1	1	0.5283	FALSE	344	821	44	306	0	FALSE	ACH-000701
RMUGS_OVARY	RP11-96H19.1--RP11-446N19.1	9	16	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.93	0.96	0.1106	0.1965	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RMUGS_OVARY	0.93	0.96	0.3071	FALSE	467	2173	244	435	0	FALSE	ACH-000701
RMUGS_OVARY	MT-TA--MT-TC	12	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1474	0.0369	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RMUGS_OVARY	1	1	0.1843	FALSE	462	80	0	856	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND4--MT-ND4L	3	38	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0.4668	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMUGS_OVARY	1	1	0.5037	FALSE	344	821	44	306	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND4--MT-ND4L	3	35	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	75	1	0.34	0.97	0.0369	0.4299	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMUGS_OVARY	0.34	0.97	0.4668	FALSE	344	827	44	306	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND4--MT-ND4L	3	32	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	36	1	0.49	0.97	0.0369	0.3931	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMUGS_OVARY	0.49	0.97	0.43	FALSE	344	826	44	306	0	FALSE	ACH-000701
RMUGS_OVARY	NRIP1--AF127936.7	7	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.086	0.0491	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RMUGS_OVARY	0.79	1	0.1351	FALSE	292	1546	117	613	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND5--MT-ND6	7	2	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	1	3079	0.9	0	0.086	0.0246	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	RMUGS_OVARY	0	0.9	0.1106	FALSE	26	124	4	93	0	FALSE	ACH-000701
RMUGS_OVARY	RP11-680G10.1--GSE1	7	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.086	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RMUGS_OVARY	1	1	0.086	TRUE	458	1351	185	561	0	FALSE	ACH-000701
RMUGS_OVARY	YAP1--RP11-748H22.1	5	8	YAP1	4192	chr11:101985125:+	RP11-748H22.1	22176	chr11:101464411:+	ONLY_REF_SPLICE	YES	143	0	0.08	1	0.0614	0.0983	YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,RP11-748H22.1->chr11:101455026-101465887:+	RMUGS_OVARY	0.08	1	0.1597	TRUE	0	1	0	1	1	TRUE	ACH-000701
RMUGS_OVARY	MT-ND6--MT-TE	3	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0369	0.172	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RMUGS_OVARY	0.94	1	0.2089	FALSE	499	1288	110	792	0	FALSE	ACH-000701
RMUGS_OVARY	RP11-96H19.1--RP11-446N19.1	1	21	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.92	1	0.0123	0.258	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RMUGS_OVARY	0.92	1	0.2703	FALSE	192	492	57	212	0	FALSE	ACH-000701
RMUGS_OVARY	RP11-96H19.1--RP11-446N19.1	1	18	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	3	0	0.86	1	0.0123	0.2211	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RMUGS_OVARY	0.86	1	0.2334	FALSE	275	511	55	178	0	FALSE	ACH-000701
RMUGS_OVARY	CFL1--MT-CO2	5	0	CFL1	6136	chr11:65623521:-	MT-CO2	16182	chrM:7822:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0614	0	CFL1->chr11:65590493-65629497:-,cofilin_1,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RMUGS_OVARY	1	1	0.0614	FALSE	0	0	0	2	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0614	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RMUGS_OVARY	1	1	0.0614	FALSE	499	1288	110	792	0	FALSE	ACH-000701
RMUGS_OVARY	ZNF827--OTUD4	5	0	ZNF827	12263	chr4:146744574:-	OTUD4	32165	chr4:146092872:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0614	0	ZNF827->chr4:146678779-146859787:-,zinc_finger_protein_827,OTUD4->OTU_deubiquitinase_4,chr4:146031990-146101313:-	RMUGS_OVARY	1	1	0.0614	TRUE	0	0	0	1	0	TRUE	ACH-000701
RMUGS_OVARY	MT-ND4--MT-ND4L	4	2	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	2	1	0.75	0.86	0.0491	0.0246	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMUGS_OVARY	0.75	0.86	0.0737	FALSE	344	821	44	306	0	FALSE	ACH-000701
RMUGS_OVARY	PRR16--CTD-2334D19.1	4	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	17	0	0.23	1	0.0491	0.0123	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	RMUGS_OVARY	0.23	1	0.0614	FALSE	56	216	12	147	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND4--MT-ND4L	3	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0.0491	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMUGS_OVARY	1	1	0.086	FALSE	344	821	44	306	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RMUGS_OVARY	1	1	0.0491	FALSE	499	1288	110	792	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RMUGS_OVARY	1	1	0.0491	FALSE	499	1288	110	792	0	FALSE	ACH-000701
RMUGS_OVARY	NRIP1--AF127936.7	3	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.39	1	0.0369	0.0491	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RMUGS_OVARY	0.39	1	0.086	FALSE	164	806	69	479	0	FALSE	ACH-000701
RMUGS_OVARY	TAF15--KRT8	4	0	TAF15	15502	chr17:34171708:+	KRT8	27142	chr12:53298644:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0	TAF15->Oncogene{Bushman},TATA-box_binding_protein_associated_factor_15,chr17:34136459-34191619:+,KRT8->chr12:53290977-53343738:-,keratin_8	RMUGS_OVARY	1	1	0.0491	TRUE	0	1	0	1	0	TRUE	ACH-000701
RMUGS_OVARY	RP11-120D5.1--MID1	3	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	34	1	0.15	0.0369	0.0369	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RMUGS_OVARY	0.15	1	0.0738	FALSE	16	356	14	466	0	FALSE	ACH-000701
RMUGS_OVARY	CHST11--TXNRD1	3	1	CHST11	2941	chr12:104851292:+	TXNRD1	16694	chr12:104645305:+	ONLY_REF_SPLICE	YES	64	3	0.06	0.57	0.0369	0.0123	{Klijn_CCL:Ovary=1},CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	RMUGS_OVARY	0.06	0.57	0.0492	TRUE	0	0	0	2	0	TRUE	ACH-000701
RMUGS_OVARY	MT-ND4--MT-ND4L	3	0	MT-ND4	1019	chrM:10778:+	MT-ND4L	5617	chrM:10708:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMUGS_OVARY	1	1	0.0369	FALSE	344	821	44	306	0	FALSE	ACH-000701
RMUGS_OVARY	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMUGS_OVARY	1	1	0.0369	FALSE	344	821	44	306	0	FALSE	ACH-000701
RMUGS_OVARY	SAMD5--SASH1	3	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0369	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	RMUGS_OVARY	1	1	0.0369	TRUE	53	396	64	110	0	FALSE	ACH-000701
RMUGS_OVARY	CHST11--TXNRD1	2	1	CHST11	2956	chr12:104851307:+	TXNRD1	16694	chr12:104645305:+	ONLY_REF_SPLICE	YES	65	3	0.04	0.5	0.0246	0.0123	{Klijn_CCL:Ovary=1},CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	RMUGS_OVARY	0.04	0.5	0.0369	TRUE	0	0	0	2	0	TRUE	ACH-000701
RMUGS_OVARY	COL4A5--ZC3H14	2	1	COL4A5	21534	chrX:107840798:+	ZC3H14	62250	chr14:89041037:+	ONLY_REF_SPLICE	NO	134	71	0.02	0.04	0.0246	0.0123	COL4A5->chrX:107683074-107940775:+,collagen_type_IV_alpha_5,ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14	RMUGS_OVARY	0.02	0.04	0.0369	TRUE	0	0	0	1	0	FALSE	ACH-000701
RMUGS_OVARY	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	RMUGS_OVARY	1	1	0.0246	TRUE	347	1186	183	220	0	FALSE	ACH-000701
RMUGS_OVARY	MATR3--CTNNA1	2	0	MATR3	9772	chr5:138629494:+	CTNNA1	45982	chr5:138145727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	RMUGS_OVARY	1	1	0.0246	TRUE	3	14	0	14	0	FALSE	ACH-000701
RMUGS_OVARY	NRIP1--AF127936.7	1	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.31	1	0.0123	0.0491	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RMUGS_OVARY	0.31	1	0.0614	FALSE	125	705	46	456	0	FALSE	ACH-000701
RMUGS_OVARY	RP11-785H5.2--PRR4	2	0	RP11-785H5.2	1087	chr12:11323866:-	PRR4	7925	chr12:11199787:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	NEIGHBORS_OVERLAP:-:-:[5263],RP11-785H5.2->chr12:11318689-11323952:-,PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal)	RMUGS_OVARY	1	1	0.0246	FALSE	2	0	0	1	0	FALSE	ACH-000701
RMUGS_OVARY	GATS--PILRB	1	2	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	NO	51	50	0.06	0.06	0.0123	0.0246	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	RMUGS_OVARY	0.06	0.06	0.0369	TRUE	57	41	2	35	0	FALSE	ACH-000701
RMUGS_OVARY	TNS1--TMBIM1	1	2	TNS1	10157	chr2:218771058:-	TMBIM1	62650	chr2:219146904:-	ONLY_REF_SPLICE	NO	26	45	0.1	0.06	0.0123	0.0246	TNS1->chr2:218664512-218867718:-,tensin_1,TMBIM1->chr2:219138915-219157309:-,transmembrane_BAX_inhibitor_motif_containing_1	RMUGS_OVARY	0.06	0.1	0.0369	TRUE	0	0	0	1	0	FALSE	ACH-000701
RMUGS_OVARY	ANKHD1--PFDN1	1	1	ANKHD1	10965	chr5:139844361:+	PFDN1	47759	chr5:139661118:-	ONLY_REF_SPLICE	NO	81	317	0.02	0.01	0.0123	0.0123	LOCAL_INVERSION:+:-:[98693],ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,PFDN1->chr5:139624624-139682706:-,prefoldin_subunit_1	RMUGS_OVARY	0.01	0.02	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000701
RMUGS_OVARY	GUSBP1--SPATS2L	1	1	GUSBP1	4568	chr5:21461975:+	SPATS2L	23507	chr2:201194154:+	ONLY_REF_SPLICE	YES	1	12	0.67	0.14	0.0123	0.0123	GUSBP1->chr5:21341942-21589481:+,glucuronidase,_beta_pseudogene_1,SPATS2L->chr2:201170604-201346986:+,spermatogenesis_associated_serine_rich_2_like	RMUGS_OVARY	0.14	0.67	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000701
RMUGS_OVARY	LTBR--RPLP0	1	1	LTBR	3202	chr12:6493850:+	RPLP0	13224	chr12:120638900:-	ONLY_REF_SPLICE	YES	204	0	0.01	1	0.0123	0.0123	GTEx_v2:{count=1;pct=0.01%;dist=Minor_Salivary_Gland=1},LTBR->Oncogene{Bushman},chr12:6484211-6500733:+,lymphotoxin_beta_receptor,RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0	RMUGS_OVARY	0.01	1	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000701
RMUGS_OVARY	PTPRF--HNRNPAB	1	1	PTPRF	29072	chr1:44083239:+	HNRNPAB	40402	chr5:177633733:+	ONLY_REF_SPLICE	YES	613	467	0	0	0.0123	0.0123	PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F,HNRNPAB->chr5:177631508-177638164:+,heterogeneous_nuclear_ribonucleoprotein_A/B	RMUGS_OVARY	0	0	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000701
RMUGS_OVARY	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0123	0.0123	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RMUGS_OVARY	1	1	0.0246	FALSE	93	270	15	244	0	FALSE	ACH-000701
RMUGS_OVARY	VAPA--RAB31	1	1	VAPA	1334	chr18:9914332:+	RAB31	38499	chr18:9859225:+	ONLY_REF_SPLICE	YES	607	57	0	0.03	0.0123	0.0123	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Adrenal_Gland=1,Whole_Blood=1},{Klijn_CCL:Lung=1,Head-Neck=1},LOCAL_REARRANGEMENT:+:[51451],VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+	RMUGS_OVARY	0	0.03	0.0246	FALSE	0	1	0	3	0	FALSE	ACH-000701
RMUGS_OVARY	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	1365	52	0	0.04	0.0123	0.0123	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	RMUGS_OVARY	0	0.04	0.0246	FALSE	6	50	7	115	0	FALSE	ACH-000701
NMCG1_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	103	50	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1211	0.5442	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	1.6653	TRUE	508	994	45	981	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	59	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	380	5	0.14	0.93	0.6422	0.0327	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.14	0.93	0.6749	TRUE	519	3926	326	965	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	CDKN2A--MTAP	37	45	CDKN2A	5457	chr9:21974677:-	MTAP	25801	chr9:21861975:+	ONLY_REF_SPLICE	YES	4	137	0.95	0.37	0.4027	0.4898	LOCAL_INVERSION:-:+:[36105],CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A,MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.37	0.95	0.8925	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	42	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4571	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.4571	TRUE	0	0	0	518	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	25	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2721	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.2721	TRUE	7	10	0	216	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	18	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1959	0.0109	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.2068	FALSE	462	80	0	856	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	16	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.1742	0.0762	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.96	1	0.2504	TRUE	477	1352	189	275	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	16	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.83	1	0.1742	0.0435	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.2177	FALSE	292	1546	117	613	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	CDKN2A--MTAP	12	12	CDKN2A	5457	chr9:21974677:-	MTAP	31904	chr9:21931007:+	ONLY_REF_SPLICE	YES	4	15	0.86	0.62	0.1306	0.1306	LOCAL_INVERSION:-:+:[36105],CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A,MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.62	0.86	0.2612	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	SPG11--MRPL52	15	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1633	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1633	TRUE	38	11	0	19	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	CDKN2A--RP11-149I2.5	12	3	CDKN2A	5457	chr9:21974677:-	RP11-149I2.5	14932	chr9:21931007:+	INCL_NON_REF_SPLICE	YES	4	0	0.79	1	0.1306	0.0327	LOCAL_INVERSION:-:+:[36679],CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A,RP11-149I2.5->chr9:21929456-21931072:+	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.79	1	0.1633	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	ATG4A--VSIG1	12	1	ATG4A	1169	chrX:107335066:+	VSIG1	24901	chrX:107319307:+	ONLY_REF_SPLICE	YES	22	1	0.37	0.93	0.1306	0.0109	LOCAL_REARRANGEMENT:+:[12484],ATG4A->autophagy_related_4A_cysteine_peptidase,chrX:107334898-107397901:+,VSIG1->V-set_and_immunoglobulin_domain_containing_1,chrX:107288200-107322414:+	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.37	0.93	0.1415	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	9	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.098	0.0218	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1198	FALSE	416	2512	207	587	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	6	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	81	93	0.19	0.17	0.0653	0.1415	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.17	0.19	0.2068	TRUE	267	562	48	632	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	7	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	79	94	0.16	0.14	0.0762	0.0871	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.14	0.16	0.1633	TRUE	267	562	48	632	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	7	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0762	0.0109	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0871	FALSE	462	80	0	856	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	5	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	41	0	0.23	1	0.0544	0.0762	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.23	1	0.1306	FALSE	164	806	69	479	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	THBS1--VIM	4	10	THBS1	8002	chr15:39880328:+	VIM	23361	chr10:17271277:+	INCL_NON_REF_SPLICE	YES	9035	35	0	0.29	0.0435	0.1088	GTEx&tcga_normals:2/3694=0.05%,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,VIM->chr10:17270258-17279592:+,vimentin	NMCG1_CENTRAL_NERVOUS_SYSTEM	0	0.29	0.1523	TRUE	0	0	0	2	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	CALM3--MT-ND4L	5	4	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1845	0	0	1	0.0544	0.0435	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NMCG1_CENTRAL_NERVOUS_SYSTEM	0	1	0.0979	FALSE	1	1	0	107	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	5	4	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	37	0	0.2	1	0.0544	0.0435	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.2	1	0.0979	FALSE	56	216	12	147	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	5	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0544	0.0327	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.0871	FALSE	515	4851	409	746	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	5	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0544	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0544	TRUE	347	1186	183	220	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	4	4	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	13	0	0.38	1	0.0435	0.0435	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.087	FALSE	21	45	1	60	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	VIM--ACTB	5	0	VIM	2082	chr10:17271339:+	ACTB	15618	chr7:5570234:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0544	TRUE	0	0	0	9	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	HCG4P5--SPP1	4	3	HCG4P5	1523	chr6:29910322:-	SPP1	5078	chr4:88896903:+	INCL_NON_REF_SPLICE	YES	5	0	0.58	1	0.0435	0.0327	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.58	1	0.0762	TRUE	0	1	0	4	1	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	RPSAP52--HMGA2	4	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	24	563	0.2	0.01	0.0435	0.0218	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.01	0.2	0.0653	FALSE	0	59	0	125	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	RPA1--SERPINF1	4	1	RPA1	5340	chr17:1756483:+	SERPINF1	27015	chr17:1670197:+	ONLY_REF_SPLICE	YES	379	1	0.01	0.83	0.0435	0.0109	LOCAL_REARRANGEMENT:+:[52128],RPA1->chr17:1732996-1803376:+,replication_protein_A1,SERPINF1->chr17:1665253-1680868:+,serpin_family_F_member_1	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.01	0.83	0.0544	FALSE	0	0	0	1	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	VIM--ACTB	4	0	VIM	2131	chr10:17271388:+	ACTB	15671	chr7:5570181:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0435	TRUE	0	0	0	9	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	VIM--ACTB	3	3	VIM	2195	chr10:17271452:+	ACTB	15620	chr7:5570232:-	INCL_NON_REF_SPLICE	YES	13912	0	0	1	0.0327	0.0327	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	0	1	0.0654	FALSE	0	0	0	9	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	SEPT11--CCNI	3	1	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	626	363	0.01	0.01	0.0327	0.0109	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0436	FALSE	0	1	0	17	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	21	0	0.22	1	0.0218	0.0435	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.22	1	0.0653	FALSE	125	705	46	456	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	PSMB7--VIM-AS1	3	0	PSMB7	10345	chr9:127118825:-	VIM-AS1	15306	chr10:17271415:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7,VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	4	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0218	0.0435	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.0653	TRUE	274	363	69	150	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0.0435	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0653	FALSE	467	2173	244	435	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	EEF1DP3--FRY	2	2	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	1	1	0.8	0.8	0.0218	0.0218	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.8	0.8	0.0436	FALSE	20	24	2	21	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	ATG4A--VSIG1	2	1	ATG4A	1212	chrX:107335109:+	VSIG1	24901	chrX:107319307:+	ONLY_REF_SPLICE	YES	25	1	0.11	0.75	0.0218	0.0109	LOCAL_REARRANGEMENT:+:[12484],ATG4A->autophagy_related_4A_cysteine_peptidase,chrX:107334898-107397901:+,VSIG1->V-set_and_immunoglobulin_domain_containing_1,chrX:107288200-107322414:+	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.11	0.75	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	2	1	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	4452	159	0	0.02	0.0218	0.0109	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	NMCG1_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0327	FALSE	0	20	0	35	2	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	CTC-353G13.1--TENM2	2	0	CTC-353G13.1	1078	chr5:167380397:-	TENM2	13168	chr5:167302991:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	NEIGHBORS_OVERLAP:-:+:[15752],CTC-353G13.1->chr5:167364722-167380474:-,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	FBXL13--NF1	2	0	FBXL13	2698	chr7:102696091:-	NF1	93327	chr17:29685987:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-,NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	MKRN1--CTBP1	2	0	MKRN1	1410	chr7:140178960:-	CTBP1	19703	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	MKRN1->chr7:140152840-140179369:-,makorin_ring_finger_protein_1,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	1253	chr12:24715272:-	SOX5	18992	chr12:23999127:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0218	TRUE	0	0	0	1	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	TUBB6--RTN4	2	0	TUBB6	2127	chr18:12308794:+	RTN4	28202	chr2:55214834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	TUBB6->chr18:12307668-12344319:+,tubulin_beta_6_class_V,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	NMCG1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	1	3	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	317	202	0.01	0.02	0.0109	0.0327	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0436	FALSE	38	10	2	29	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0109	0.0327	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.0436	FALSE	407	2205	196	549	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	AC002066.1--AC073130.1	1	2	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	10	0	0.23	1	0.0109	0.0218	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.23	1	0.0327	FALSE	0	1	1	30	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	RP11-89K10.1--PCAT1	1	2	RP11-89K10.1	2156	chr8:127601535:+	PCAT1	14438	chr8:127889917:+	ONLY_REF_SPLICE	YES	19	0	0.14	1	0.0109	0.0218	RP11-89K10.1->chr8:127570120-127725660:+,PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding)	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.0327	TRUE	0	4	0	4	4	TRUE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	ATG16L1--DEK	1	1	ATG16L1	2905	chr2:234160588:+	DEK	29594	chr6:18256082:-	ONLY_REF_SPLICE	NO	173	793	0.01	0	0.0109	0.0109	ATG16L1->autophagy_related_16_like_1,chr2:234118697-234204320:+,DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	COL5A2--GULP1	1	1	COL5A2	1372	chr2:190044234:-	GULP1	59861	chr2:189387483:+	ONLY_REF_SPLICE	NO	883	227	0	0.01	0.0109	0.0109	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},COL5A2->chr2:189896622-190044605:-,collagen_type_V_alpha_2,GULP1->GULP,_engulfment_adaptor_PTB_domain_containing_1,chr2:189156396-189460653:+	NMCG1_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	CUL3--ANXA2	1	1	CUL3	12238	chr2:225378241:-	ANXA2	59247	chr15:60646412:-	ONLY_REF_SPLICE	YES	198	10037	0.01	0	0.0109	0.0109	CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3,ANXA2->annexin_A2,chr15:60639333-60695082:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	DLC1--FAM86B3P	1	1	DLC1	22698	chr8:12952268:-	FAM86B3P	36716	chr8:8090316:+	ONLY_REF_SPLICE	YES	109	6	0.02	0.25	0.0109	0.0109	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,FAM86B3P->chr8:8086117-8102387:+,family_with_sequence_similarity_86_member_B3,_pseudogene	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.02	0.25	0.0218	TRUE	0	0	0	1	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	EEF1DP3--FRY	1	1	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	5	1	0.29	0.67	0.0109	0.0109	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.29	0.67	0.0218	FALSE	18	26	2	21	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	FAM168A--RAB6A	1	1	FAM168A	1267	chr11:73308968:-	RAB6A	21682	chr11:73441868:-	ONLY_REF_SPLICE	YES	104	307	0.02	0.01	0.0109	0.0109	LOCAL_REARRANGEMENT:-:[77449],FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A,RAB6A->RAB6A,_member_RAS_oncogene_family,chr11:73386683-73472182:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0218	FALSE	0	1	0	4	1	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	4	7	0.33	0.22	0.0109	0.0109	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.22	0.33	0.0218	FALSE	25	145	6	90	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	21	7	0.09	0.22	0.0109	0.0109	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.09	0.22	0.0218	FALSE	7	44	2	41	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	PKD1P5--AHSA2	1	1	PKD1P5	21083	chr16:18470593:-	AHSA2	29670	chr2:61406116:+	ONLY_REF_SPLICE	YES	205	104	0.01	0.02	0.0109	0.0109	PKD1P5->chr16:18458147-18495797:-,polycystin_1,_transient_receptor_potential_channel_interacting_pseudogene_5,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	NMCG1_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000200
NMCG1_CENTRAL_NERVOUS_SYSTEM	TEAD1--PARVA	1	1	TEAD1	4496	chr11:12785981:+	PARVA	38719	chr11:12518005:+	ONLY_REF_SPLICE	YES	107	429	0.02	0	0.0109	0.0109	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	NMCG1_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0218	FALSE	0	0	0	2	0	FALSE	ACH-000200
SNU840_OVARY	TIMM23B--LINC00843	113	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.3485	0.3103	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU840_OVARY	0.99	1	1.6588	TRUE	508	994	45	981	0	FALSE	ACH-000280
SNU840_OVARY	UCK1--MED27	94	52	UCK1	1668	chr9:134405988:-	MED27	16207	chr9:134769379:-	INCL_NON_REF_SPLICE	YES	36	43	0.8	0.77	1.1218	0.6206	UCK1->chr9:134399188-134406655:-,uridine-cytidine_kinase_1,MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27	SNU840_OVARY	0.77	0.8	1.7424	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	ASXL2--WDR43	69	21	ASXL2	1351	chr2:26101035:-	WDR43	33243	chr2:29124853:+	ONLY_REF_SPLICE	YES	21	209	0.81	0.3	0.8234	0.2506	ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+	SNU840_OVARY	0.3	0.81	1.074	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	TIMM23--RP11-464F9.1	66	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	232	6	0.23	0.92	0.7876	0.0239	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU840_OVARY	0.23	0.92	0.8115	TRUE	519	3926	326	965	0	FALSE	ACH-000280
SNU840_OVARY	UCK1--MED27	52	37	UCK1	1202	chr9:134406454:-	MED27	16207	chr9:134769379:-	ONLY_REF_SPLICE	YES	36	43	0.71	0.67	0.6206	0.4416	UCK1->chr9:134399188-134406655:-,uridine-cytidine_kinase_1,MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27	SNU840_OVARY	0.67	0.71	1.0622	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	MT-ND4--MT-ND4L	4	171	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	54	0	0.76	1	0.0477	2.0407	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU840_OVARY	0.76	1	2.0884	FALSE	344	826	44	306	0	FALSE	ACH-000280
SNU840_OVARY	MT-ND4--MT-ND4L	3	170	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	28	0	0.86	1	0.0358	2.0288	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU840_OVARY	0.86	1	2.0646	FALSE	344	826	44	306	0	FALSE	ACH-000280
SNU840_OVARY	TBC1D22A--GRAMD4	42	11	TBC1D22A	18901	chr22:47433094:+	GRAMD4	30798	chr22:47033737:+	ONLY_REF_SPLICE	YES	45	8	0.54	0.87	0.5012	0.1313	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	SNU840_OVARY	0.54	0.87	0.6325	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	MT-TA--MT-TC	40	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4774	0.0358	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU840_OVARY	1	1	0.5132	FALSE	462	80	0	856	0	FALSE	ACH-000280
SNU840_OVARY	MT-ND6--MT-TE	36	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4296	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU840_OVARY	1	1	0.4296	FALSE	499	1288	110	792	0	FALSE	ACH-000280
SNU840_OVARY	MBD5--THUMPD2	31	19	MBD5	1674	chr2:148779253:+	THUMPD2	45298	chr2:39971618:-	ONLY_REF_SPLICE	YES	12	37	0.81	0.57	0.3699	0.2267	MBD5->chr2:148778580-149275805:+,methyl-CpG_binding_domain_protein_5,THUMPD2->THUMP_domain_containing_2,chr2:39963200-40006407:-	SNU840_OVARY	0.57	0.81	0.5966	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	MT-ND4--MT-ND4L	4	112	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	1	0.95	0.99	0.0477	1.3366	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU840_OVARY	0.95	0.99	1.3843	FALSE	344	821	44	306	0	FALSE	ACH-000280
SNU840_OVARY	STRN3--HECTD1	29	8	STRN3	4276	chr14:31424826:-	HECTD1	38906	chr14:31619427:-	ONLY_REF_SPLICE	YES	46	81	0.45	0.31	0.3461	0.0955	LOCAL_REARRANGEMENT:-:[73711],STRN3->chr14:31363005-31495607:-,striatin_3,HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-	SNU840_OVARY	0.31	0.45	0.4416	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	RP11-680G10.1--GSE1	29	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	71	1	0.31	0.3461	0.0358	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU840_OVARY	0.31	1	0.3819	TRUE	465	1949	224	605	0	FALSE	ACH-000280
SNU840_OVARY	MT-ND6--MT-TE	26	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.3103	0.0597	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU840_OVARY	0.89	1	0.37	FALSE	499	1288	110	792	0	FALSE	ACH-000280
SNU840_OVARY	STRN3--HECTD1	21	16	STRN3	5358	chr14:31420069:-	HECTD1	38906	chr14:31619427:-	ONLY_REF_SPLICE	YES	44	81	0.46	0.31	0.2506	0.1909	LOCAL_REARRANGEMENT:-:[73711],STRN3->chr14:31363005-31495607:-,striatin_3,HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-	SNU840_OVARY	0.31	0.46	0.4415	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	MT-ND4--MT-ND4L	17	31	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1466	0	0.03	1	0.2029	0.3699	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU840_OVARY	0.03	1	0.5728	FALSE	344	827	44	306	0	FALSE	ACH-000280
SNU840_OVARY	FAM168A--LRP4-AS1	16	12	FAM168A	1267	chr11:73308968:-	LRP4-AS1	19790	chr11:46868161:+	ONLY_REF_SPLICE	YES	43	0	0.39	1	0.1909	0.1432	FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A,LRP4-AS1->LRP4_antisense_RNA_1,chr11:46867963-46895947:+	SNU840_OVARY	0.39	1	0.3341	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	RP11-680G10.1--GSE1	18	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	32	1	0.41	0.2148	0.0477	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU840_OVARY	0.41	1	0.2625	TRUE	458	1351	185	561	0	FALSE	ACH-000280
SNU840_OVARY	MT-ND6--MT-TE	18	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2148	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU840_OVARY	1	1	0.2148	FALSE	499	1288	110	792	0	FALSE	ACH-000280
SNU840_OVARY	HSPBP1--GRK5	16	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1909	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU840_OVARY	1	1	0.1909	TRUE	1	39	0	134	39	FALSE	ACH-000280
SNU840_OVARY	PITPNM2--RILPL2	14	6	PITPNM2	2351	chr12:123594932:-	RILPL2	35342	chr12:123915206:-	ONLY_REF_SPLICE	YES	5	43	0.8	0.32	0.1671	0.0716	PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2,RILPL2->Rab_interacting_lysosomal_protein_like_2,chr12:123899936-123921264:-	SNU840_OVARY	0.32	0.8	0.2387	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	PITPNM2--RILPL2	14	4	PITPNM2	2351	chr12:123594932:-	RILPL2	36494	chr12:123907704:-	ONLY_REF_SPLICE	YES	5	37	0.78	0.33	0.1671	0.0477	PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2,RILPL2->Rab_interacting_lysosomal_protein_like_2,chr12:123899936-123921264:-	SNU840_OVARY	0.33	0.78	0.2148	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	MT-CO2--MT-CO1	13	5	MT-CO2	1249	chrM:7834:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	6	29792	0.75	0	0.1551	0.0597	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU840_OVARY	0	0.75	0.2148	FALSE	36	10	0	27	0	FALSE	ACH-000280
SNU840_OVARY	MT-ND4--MT-ND4L	3	45	MT-ND4	1144	chrM:10903:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	24	0	0.67	1	0.0358	0.537	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU840_OVARY	0.67	1	0.5728	FALSE	344	826	44	306	0	FALSE	ACH-000280
SNU840_OVARY	MT-ND6--MT-TE	12	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1432	0.0955	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU840_OVARY	0.95	1	0.2387	FALSE	499	1288	110	792	0	FALSE	ACH-000280
SNU840_OVARY	MRPL48--PICK1	10	10	MRPL48	12723	chr11:73556021:+	PICK1	23235	chr22:38455241:+	ONLY_REF_SPLICE	YES	40	49	0.33	0.29	0.1193	0.1193	MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,PICK1->Oncogene{Bushman},chr22:38452318-38471708:+,protein_interacting_with_PRKCA_1	SNU840_OVARY	0.29	0.33	0.2386	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	CDK13--LINC00265	9	13	CDK13	7958	chr7:40041630:+	LINC00265	26614	chr7:39807003:+	ONLY_REF_SPLICE	YES	44	3	0.33	0.88	0.1074	0.1551	CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,LINC00265->chr7:39773231-39832691:+,long_intergenic_non-protein_coding_RNA_265	SNU840_OVARY	0.33	0.88	0.2625	TRUE	0	0	0	2	0	TRUE	ACH-000280
SNU840_OVARY	MT-ND4--MT-ND4L	4	31	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1504	0	0.02	1	0.0477	0.3699	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU840_OVARY	0.02	1	0.4176	FALSE	344	827	44	306	0	FALSE	ACH-000280
SNU840_OVARY	MT-ND4--MT-ND4L	4	31	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	62	0	0.36	1	0.0477	0.3699	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU840_OVARY	0.36	1	0.4176	FALSE	344	826	44	306	0	FALSE	ACH-000280
SNU840_OVARY	MT-ND4--MT-ND4L	4	30	MT-ND4	1278	chrM:11037:+	MT-ND4L	5663	chrM:10754:+	INCL_NON_REF_SPLICE	YES	112	0	0.23	1	0.0477	0.358	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU840_OVARY	0.23	1	0.4057	FALSE	344	827	44	306	0	FALSE	ACH-000280
SNU840_OVARY	UBA3--FRMD4B	9	8	UBA3	2786	chr3:69126949:-	FRMD4B	20186	chr3:69481912:-	ONLY_REF_SPLICE	YES	227	0	0.07	1	0.1074	0.0955	LOCAL_REARRANGEMENT:-:[89582],UBA3->chr3:69103881-69129559:-,ubiquitin_like_modifier_activating_enzyme_3,FRMD4B->FERM_domain_containing_4B,chr3:69219141-69591734:-	SNU840_OVARY	0.07	1	0.2029	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	MT-ND4--MT-ND4L	3	31	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	24	0	0.59	1	0.0358	0.3699	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU840_OVARY	0.59	1	0.4057	FALSE	344	826	44	306	0	FALSE	ACH-000280
SNU840_OVARY	MT-ND4--MT-ND4L	3	31	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	62	0	0.35	1	0.0358	0.3699	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU840_OVARY	0.35	1	0.4057	FALSE	344	826	44	306	0	FALSE	ACH-000280
SNU840_OVARY	MT-TA--MT-TC	9	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1074	0.0239	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU840_OVARY	1	1	0.1313	FALSE	462	80	0	856	0	FALSE	ACH-000280
SNU840_OVARY	PFKL--MT-ND4L	9	2	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	405	0	0.03	1	0.1074	0.0239	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU840_OVARY	0.03	1	0.1313	FALSE	0	0	0	33	0	FALSE	ACH-000280
SNU840_OVARY	TM9SF1--NEDD8	8	1	TM9SF1	5560	chr14:24663881:-	NEDD8	18814	chr14:24687637:-	ONLY_REF_SPLICE	YES	189	544	0.05	0.02	0.0955	0.0119	LOCAL_INVERSION:-,chr14:-:[3379],TM9SF1->chr14:24658349-24682679:-,chr14:24658363-24682679:-,transmembrane_9_superfamily_member_1,NEDD8->chr14:24686058-24701660:-,neural_precursor_cell_expressed,_developmentally_down-regulated_8	SNU840_OVARY	0.02	0.05	0.1074	TRUE	0	0	0	1	0	FALSE	ACH-000280
SNU840_OVARY	UCK1--MED27	3	21	UCK1	1668	chr9:134405988:-	MED27	17315	chr9:134759486:-	INCL_NON_REF_SPLICE	YES	36	50	0.4	0.32	0.0358	0.2506	UCK1->chr9:134399188-134406655:-,uridine-cytidine_kinase_1,MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27	SNU840_OVARY	0.32	0.4	0.2864	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	MT-ND4--MT-ND4L	4	15	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	52	0	0.27	1	0.0477	0.179	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU840_OVARY	0.27	1	0.2267	FALSE	344	826	44	306	0	FALSE	ACH-000280
SNU840_OVARY	MT-ND6--MT-TE	5	8	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.76	1	0.0597	0.0955	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU840_OVARY	0.76	1	0.1552	FALSE	499	1288	110	792	0	FALSE	ACH-000280
SNU840_OVARY	STRA13--ZHX3	7	0	STRA13	2136	chr17:79980702:-	ZHX3	18740	chr20:39833706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0835	0	STRA13->chr17:79976578-79981983:-,stimulated_by_retinoic_acid_13,ZHX3->chr20:39807088-39946312:-,zinc_fingers_and_homeoboxes_3	SNU840_OVARY	1	1	0.0835	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	UCK1--MED27	5	8	UCK1	1202	chr9:134406454:-	MED27	18357	chr9:134738527:-	ONLY_REF_SPLICE	YES	36	59	0.27	0.18	0.0597	0.0955	UCK1->chr9:134399188-134406655:-,uridine-cytidine_kinase_1,MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27	SNU840_OVARY	0.18	0.27	0.1552	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	MT-CO2--MT-CO1	5	7	MT-CO2	1282	chrM:7867:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	9	25884	0.57	0	0.0597	0.0835	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU840_OVARY	0	0.57	0.1432	FALSE	36	10	0	27	0	FALSE	ACH-000280
SNU840_OVARY	MT-ND4--MT-ND4L	4	10	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0.1193	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU840_OVARY	1	1	0.167	FALSE	344	821	44	306	0	FALSE	ACH-000280
SNU840_OVARY	FTH1--ACTG1	6	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0716	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SNU840_OVARY	1	1	0.0716	TRUE	0	0	0	64	0	FALSE	ACH-000280
SNU840_OVARY	MT-ND6--MT-TE	6	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0716	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU840_OVARY	1	1	0.0716	FALSE	499	1288	110	792	0	FALSE	ACH-000280
SNU840_OVARY	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0716	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU840_OVARY	1	1	0.0716	FALSE	462	80	0	856	0	FALSE	ACH-000280
SNU840_OVARY	MT-TA--MT-TC	5	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0597	0.0358	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU840_OVARY	1	1	0.0955	FALSE	462	80	0	856	0	FALSE	ACH-000280
SNU840_OVARY	NRIP1--AF127936.7	5	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	1	0.73	0.89	0.0597	0.0358	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU840_OVARY	0.73	0.89	0.0955	FALSE	292	1546	117	613	0	FALSE	ACH-000280
SNU840_OVARY	RP11-353N4.6--RP11-403I13.8	5	2	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	24	2	0.23	0.78	0.0597	0.0239	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	SNU840_OVARY	0.23	0.78	0.0836	TRUE	6	2	0	8	0	FALSE	ACH-000280
SNU840_OVARY	RP11-353N4.6--RP11-403I13.8	5	2	RP11-353N4.6	2221	chr1:149576702:+	RP11-403I13.8	17239	chr1:149291199:+	INCL_NON_REF_SPLICE	YES	24	2	0.23	0.78	0.0597	0.0239	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	SNU840_OVARY	0.23	0.78	0.0836	TRUE	6	2	0	8	0	FALSE	ACH-000280
SNU840_OVARY	RP11-96H19.1--RP11-446N19.1	4	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.89	0.89	0.0477	0.0477	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU840_OVARY	0.89	0.89	0.0954	FALSE	515	4851	409	746	0	FALSE	ACH-000280
SNU840_OVARY	MRPL48--PICK1	4	3	MRPL48	12723	chr11:73556021:+	PICK1	24347	chr22:38461009:+	ONLY_REF_SPLICE	YES	40	49	0.15	0.12	0.0477	0.0358	MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,PICK1->Oncogene{Bushman},chr22:38452318-38471708:+,protein_interacting_with_PRKCA_1	SNU840_OVARY	0.12	0.15	0.0835	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	NRIP1--AF127936.7	4	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	1	0.3	0.88	0.0477	0.0358	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU840_OVARY	0.3	0.88	0.0835	FALSE	125	705	46	456	0	FALSE	ACH-000280
SNU840_OVARY	RP11-353N4.6--RP11-403I13.8	4	3	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	24	2	0.23	0.78	0.0477	0.0358	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	SNU840_OVARY	0.23	0.78	0.0835	TRUE	6	2	0	8	0	FALSE	ACH-000280
SNU840_OVARY	MRPL48--CSNK1E	4	2	MRPL48	12723	chr11:73556021:+	CSNK1E	27774	chr22:38710174:-	ONLY_REF_SPLICE	YES	40	18	0.13	0.25	0.0477	0.0239	MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-	SNU840_OVARY	0.13	0.25	0.0716	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	MT-ATP6--MT-CO2	3	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	27	0	0.25	1	0.0358	0.0716	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU840_OVARY	0.25	1	0.1074	FALSE	59	21	0	114	0	FALSE	ACH-000280
SNU840_OVARY	NRIP1--AF127936.7	3	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	26	1	0.26	0.9	0.0358	0.0716	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU840_OVARY	0.26	0.9	0.1074	FALSE	164	806	69	479	0	FALSE	ACH-000280
SNU840_OVARY	UCK1--MED27	1	14	UCK1	1202	chr9:134406454:-	MED27	17315	chr9:134759486:-	ONLY_REF_SPLICE	NO	36	50	0.29	0.23	0.0119	0.1671	UCK1->chr9:134399188-134406655:-,uridine-cytidine_kinase_1,MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27	SNU840_OVARY	0.23	0.29	0.179	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	FAM168A--LRP4-AS1	3	5	FAM168A	1267	chr11:73308968:-	LRP4-AS1	21993	chr11:46894625:+	ONLY_REF_SPLICE	YES	43	1	0.16	0.89	0.0358	0.0597	FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A,LRP4-AS1->LRP4_antisense_RNA_1,chr11:46867963-46895947:+	SNU840_OVARY	0.16	0.89	0.0955	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	MT-ATP6--MT-CO1	4	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7997	29832	0	0	0.0477	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU840_OVARY	0	0	0.0596	FALSE	183	104	9	328	0	FALSE	ACH-000280
SNU840_OVARY	MT-ATP6--MT-CO1	4	1	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	YES	4127	24660	0	0	0.0477	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU840_OVARY	0	0	0.0596	FALSE	183	104	9	328	0	FALSE	ACH-000280
SNU840_OVARY	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU840_OVARY	1	1	0.0477	FALSE	344	821	44	306	0	FALSE	ACH-000280
SNU840_OVARY	MT-ATP6--MT-CO1	3	3	MT-ATP6	1150	chrM:8676:+	MT-CO1	5195	chrM:6417:+	INCL_NON_REF_SPLICE	YES	9143	26521	0	0	0.0358	0.0358	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU840_OVARY	0	0	0.0716	FALSE	183	104	9	328	0	FALSE	ACH-000280
SNU840_OVARY	MT-ATP6--MT-CO1	3	2	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	9519	27382	0	0	0.0358	0.0239	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU840_OVARY	0	0	0.0597	FALSE	183	104	9	328	0	FALSE	ACH-000280
SNU840_OVARY	PRR16--CTD-2334D19.1	3	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	31	0	0.14	1	0.0358	0.0239	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SNU840_OVARY	0.14	1	0.0597	FALSE	56	216	12	147	0	FALSE	ACH-000280
SNU840_OVARY	SLC7A5--MT-ND4L	3	2	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1320	0	0	1	0.0358	0.0239	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU840_OVARY	0	1	0.0597	FALSE	0	0	0	23	0	FALSE	ACH-000280
SNU840_OVARY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	7910	29414	0	0	0.0358	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU840_OVARY	0	0	0.0477	FALSE	183	104	9	328	0	FALSE	ACH-000280
SNU840_OVARY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	7932	26615	0	0	0.0358	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU840_OVARY	0	0	0.0477	FALSE	183	104	9	328	0	FALSE	ACH-000280
SNU840_OVARY	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0239	0.0597	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU840_OVARY	0.88	1	0.0836	FALSE	407	2205	196	549	0	FALSE	ACH-000280
SNU840_OVARY	SCARB1--UBC	3	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	225	78	0.02	0.05	0.0358	0.0119	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU840_OVARY	0.02	0.05	0.0477	TRUE	55	66	6	101	0	FALSE	ACH-000280
SNU840_OVARY	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU840_OVARY	1	1	0.0358	FALSE	344	821	44	306	0	FALSE	ACH-000280
SNU840_OVARY	MT-ND4--MT-ND4L	3	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU840_OVARY	1	1	0.0358	FALSE	344	821	44	306	0	FALSE	ACH-000280
SNU840_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU840_OVARY	1	1	0.0358	FALSE	499	1288	110	792	0	FALSE	ACH-000280
SNU840_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU840_OVARY	1	1	0.0358	FALSE	499	1288	110	792	0	FALSE	ACH-000280
SNU840_OVARY	ASXL2--WDR43	1	7	ASXL2	1351	chr2:26101035:-	WDR43	35427	chr2:29129326:+	ONLY_REF_SPLICE	YES	21	184	0.28	0.04	0.0119	0.0835	ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+	SNU840_OVARY	0.04	0.28	0.0954	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	TBC1D22A--GRAMD4	1	7	TBC1D22A	17773	chr22:47393605:+	GRAMD4	30798	chr22:47033737:+	ONLY_REF_SPLICE	YES	51	8	0.14	0.5	0.0119	0.0835	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	SNU840_OVARY	0.14	0.5	0.0954	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	TBC1D22A--GRAMD4	2	3	TBC1D22A	18901	chr22:47433094:+	GRAMD4	31919	chr22:47054084:+	ONLY_REF_SPLICE	YES	45	15	0.1	0.25	0.0239	0.0358	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	SNU840_OVARY	0.1	0.25	0.0597	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0119	0.0716	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU840_OVARY	1	1	0.0835	FALSE	192	492	57	212	0	FALSE	ACH-000280
SNU840_OVARY	CTC-786C10.1--GSE1	1	5	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	71	1	0.08	0.0119	0.0597	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU840_OVARY	0.08	1	0.0716	TRUE	2	3	0	21	0	FALSE	ACH-000280
SNU840_OVARY	F3--SPG7	2	1	F3	1264	chr1:95007093:-	SPG7	29909	chr16:89611056:+	ONLY_REF_SPLICE	YES	1597	91	0	0.03	0.0239	0.0119	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Head-Neck=2,Breast=1},F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SNU840_OVARY	0	0.03	0.0358	FALSE	0	0	0	8	0	FALSE	ACH-000280
SNU840_OVARY	MAEA--CTBP1	2	1	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	5	16	0.38	0.16	0.0239	0.0119	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SNU840_OVARY	0.16	0.38	0.0358	TRUE	3	14	2	43	0	FALSE	ACH-000280
SNU840_OVARY	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0119	0.0597	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU840_OVARY	0.86	1	0.0716	FALSE	467	2173	244	435	0	FALSE	ACH-000280
SNU840_OVARY	STRN3--HECTD1	2	1	STRN3	1498	chr14:31495110:-	HECTD1	38906	chr14:31619427:-	ONLY_REF_SPLICE	YES	39	81	0.07	0.04	0.0239	0.0119	LOCAL_REARRANGEMENT:-:[73711],STRN3->chr14:31363005-31495607:-,striatin_3,HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-	SNU840_OVARY	0.04	0.07	0.0358	TRUE	0	0	0	1	0	FALSE	ACH-000280
SNU840_OVARY	GAS6--TFDP1	2	0	GAS6	1499	chr13:114566548:-	TFDP1	22838	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_Transformed_fibroblasts=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	SNU840_OVARY	1	1	0.0239	TRUE	0	1	0	5	0	TRUE	ACH-000280
SNU840_OVARY	RPS6KB1--VMP1	2	0	RPS6KB1	1240	chr17:57970686:+	VMP1	32885	chr17:57842332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SNU840_OVARY	1	1	0.0239	TRUE	0	2	0	6	2	TRUE	ACH-000280
SNU840_OVARY	STIP1--PPP2R2A	2	0	STIP1	1999	chr11:63953742:+	PPP2R2A	24322	chr8:26211984:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1,PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha	SNU840_OVARY	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	STRA13--ZHX3	2	0	STRA13	2136	chr17:79980702:-	ZHX3	16465	chr20:39867436:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	STRA13->chr17:79976578-79981983:-,stimulated_by_retinoic_acid_13,ZHX3->chr20:39807088-39946312:-,zinc_fingers_and_homeoboxes_3	SNU840_OVARY	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	TBC1D22A--GRAMD4	2	0	TBC1D22A	17773	chr22:47393605:+	GRAMD4	31919	chr22:47054084:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	SNU840_OVARY	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000280
SNU840_OVARY	RPS6KB1--VMP1	1	2	RPS6KB1	7326	chr17:57992064:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	132	425	0.02	0.01	0.0119	0.0239	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SNU840_OVARY	0.01	0.02	0.0358	FALSE	0	8	0	9	5	FALSE	ACH-000280
SNU840_OVARY	AFF4--ETF1	1	1	AFF4	1376	chr5:132298951:-	ETF1	37901	chr5:137854556:-	ONLY_REF_SPLICE	YES	83	367	0.02	0.01	0.0119	0.0119	AFF4->AF4/FMR2_family_member_4,Oncogene{Bushman},chr5:132211071-132299326:-,ETF1->chr5:137841784-137878989:-,eukaryotic_translation_termination_factor_1	SNU840_OVARY	0.01	0.02	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000280
SNU840_OVARY	FBRSL1--NOC4L	1	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33548	chr12:132635803:+	ONLY_REF_SPLICE	YES	18	70	0.1	0.03	0.0119	0.0119	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	SNU840_OVARY	0.03	0.1	0.0238	TRUE	3	48	0	26	0	FALSE	ACH-000280
SNU840_OVARY	GXYLT1--PPHLN1	1	1	GXYLT1	7689	chr12:42491244:-	PPHLN1	36381	chr12:42792656:+	ONLY_REF_SPLICE	YES	62	102	0.03	0.02	0.0119	0.0119	GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Cells_-_Transformed_fibroblasts=1},{Klijn_CCL:Breast=2},LOCAL_INVERSION:-:+:[93568],GXYLT1->chr12:42475647-42538681:-,glucoside_xylosyltransferase_1,PPHLN1->chr12:42632249-42853517:+,periphilin_1	SNU840_OVARY	0.02	0.03	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000280
SNU840_OVARY	MYO10--BASP1	1	1	MYO10	1476	chr5:16935897:-	BASP1	57021	chr5:17275317:+	ONLY_REF_SPLICE	YES	329	540	0.01	0	0.0119	0.0119	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},MYO10->chr5:16665395-16936372:-,myosin_X,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	SNU840_OVARY	0	0.01	0.0238	FALSE	0	0	0	3	0	FALSE	ACH-000280
SNU840_OVARY	SF1--FUS	1	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	NO	312	614	0.01	0	0.0119	0.0119	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	SNU840_OVARY	0	0.01	0.0238	FALSE	5	20	0	32	0	FALSE	ACH-000280
UBLC1_URINARY_TRACT	MT-ND4--MT-ND4L	4	70	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	NO	17	1	0.81	0.99	0.0696	1.2184	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UBLC1_URINARY_TRACT	0.81	0.99	1.288	FALSE	344	826	44	306	0	FALSE	ACH-000741
UBLC1_URINARY_TRACT	MT-ND4--MT-ND4L	4	70	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	9	1	0.89	0.99	0.0696	1.2184	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UBLC1_URINARY_TRACT	0.89	0.99	1.288	FALSE	344	826	44	306	0	FALSE	ACH-000741
UBLC1_URINARY_TRACT	MT-TA--MT-TC	18	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3133	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UBLC1_URINARY_TRACT	1	1	0.3133	FALSE	462	80	0	856	0	FALSE	ACH-000741
UBLC1_URINARY_TRACT	RGL1--LINC00184	9	1	RGL1	6007	chr1:183775619:+	LINC00184	29526	chr1:234765355:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1566	0.0174	RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1,LINC00184->chr1:234765057-234770526:+,long_intergenic_non-protein_coding_RNA_184	UBLC1_URINARY_TRACT	1	1	0.174	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	MT-ND4--MT-ND4L	4	16	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2140	0	0.01	1	0.0696	0.2785	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UBLC1_URINARY_TRACT	0.01	1	0.3481	FALSE	344	827	44	306	0	FALSE	ACH-000741
UBLC1_URINARY_TRACT	MT-ND4--MT-ND4L	3	16	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	17	0	0.53	1	0.0522	0.2785	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UBLC1_URINARY_TRACT	0.53	1	0.3307	FALSE	344	826	44	306	0	FALSE	ACH-000741
UBLC1_URINARY_TRACT	MT-ND4--MT-ND4L	3	16	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2100	0	0.01	1	0.0522	0.2785	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UBLC1_URINARY_TRACT	0.01	1	0.3307	FALSE	344	827	44	306	0	FALSE	ACH-000741
UBLC1_URINARY_TRACT	NUP98--STIM1	6	3	NUP98	22882	chr11:3733794:-	STIM1	59303	chr11:4045103:+	ONLY_REF_SPLICE	YES	13	4	0.41	0.69	0.1044	0.0522	LOCAL_INVERSION:-:+:[56735],NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1	UBLC1_URINARY_TRACT	0.41	0.69	0.1566	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	MT-ND5--MT-ND4	4	5	MT-ND5	2794	chrM:14130:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	0	3318	1	0	0.0696	0.087	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	UBLC1_URINARY_TRACT	0	1	0.1566	FALSE	47	27	1	24	0	FALSE	ACH-000741
UBLC1_URINARY_TRACT	MT-TA--MT-TC	5	0	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.087	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UBLC1_URINARY_TRACT	1	1	0.087	FALSE	462	80	0	856	0	FALSE	ACH-000741
UBLC1_URINARY_TRACT	MT-ND5--MT-ND4	3	3	MT-ND5	2202	chrM:13538:+	MT-ND4	5945	chrM:10892:+	INCL_NON_REF_SPLICE	YES	600	1157	0.01	0.01	0.0522	0.0522	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	UBLC1_URINARY_TRACT	0.01	0.01	0.1044	FALSE	32	27	1	23	0	FALSE	ACH-000741
UBLC1_URINARY_TRACT	CTTN--PPFIA1	3	2	CTTN	3602	chr11:70253697:+	PPFIA1	61050	chr11:70224136:+	ONLY_REF_SPLICE	YES	3	10	0.62	0.33	0.0522	0.0348	LOCAL_REARRANGEMENT:+:[14001],CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	UBLC1_URINARY_TRACT	0.33	0.62	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	MBOAT1--CASC15	3	2	MBOAT1	1304	chr6:20212367:-	CASC15	22343	chr6:21668878:+	ONLY_REF_SPLICE	YES	25	16	0.17	0.24	0.0522	0.0348	MBOAT1->chr6:20100935-20212670:-,membrane_bound_O-acyltransferase_domain_containing_1,CASC15->cancer_susceptibility_candidate_15_(non-protein_coding),chr6:21665003-22214734:+	UBLC1_URINARY_TRACT	0.17	0.24	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	MT-ND5--MT-ND4	3	2	MT-ND5	2680	chrM:14016:+	MT-ND4	6806	chrM:11753:+	INCL_NON_REF_SPLICE	YES	161	546	0.03	0.01	0.0522	0.0348	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	UBLC1_URINARY_TRACT	0.01	0.03	0.087	FALSE	47	27	1	24	0	FALSE	ACH-000741
UBLC1_URINARY_TRACT	MT-ND5--MT-ND4	3	1	MT-ND5	2131	chrM:13467:+	MT-ND4	6148	chrM:11095:+	INCL_NON_REF_SPLICE	YES	739	5823	0.01	0	0.0522	0.0174	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	UBLC1_URINARY_TRACT	0	0.01	0.0696	FALSE	47	29	1	25	0	FALSE	ACH-000741
UBLC1_URINARY_TRACT	MT-ND5--MT-TL2	3	1	MT-ND5	1110	chrM:12446:+	MT-TL2	5833	chrM:12286:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0.0174	LOCAL_REARRANGEMENT:+:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-TL2->chrM:12266-12336:+,mitochondrially_encoded_tRNA_leucine_2_(CUN)	UBLC1_URINARY_TRACT	1	1	0.0696	FALSE	3	9	1	5	0	FALSE	ACH-000741
UBLC1_URINARY_TRACT	CAPZA1--EIF4B	3	0	CAPZA1	9876	chr1:113209759:+	EIF4B	32671	chr12:53435792:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	CAPZA1->capping_actin_protein_of_muscle_Z-line_alpha_subunit_1,chr1:113161795-113214241:+,EIF4B->chr12:53399942-53435993:+,eukaryotic_translation_initiation_factor_4B	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	CD63--SMAD3	3	0	CD63	3553	chr12:56120939:-	SMAD3	29391	chr15:67485157:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	CD63->CD63_molecule,chr12:56119107-56123491:-,SMAD3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_3,chr15:67356101-67487533:+	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	GALNT2--RPL19	3	0	GALNT2	20531	chr1:230415441:+	RPL19	26402	chr17:37356977:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	GALNT2->chr1:230193536-230417870:+,polypeptide_N-acetylgalactosaminyltransferase_2,RPL19->chr17:37356536-37360980:+,ribosomal_protein_L19	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	MYO5B--RPL17	3	0	MYO5B	42713	chr18:47365514:-	RPL17	54650	chr18:47017954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0522	0	MYO5B->chr18:47349183-47721463:-,myosin_VB,RPL17->chr18:47014851-47018906:-,ribosomal_protein_L17	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	PRPF4B--NAP1L1	3	0	PRPF4B	3780	chr6:4032989:+	NAP1L1	32124	chr12:76454059:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0522	0	PRPF4B->Oncogene{Bushman},chr6:4021501-4065217:+,pre-mRNA_processing_factor_4B,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	3	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0522	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	UBLC1_URINARY_TRACT	1	1	0.0522	FALSE	515	4851	409	746	0	FALSE	ACH-000741
UBLC1_URINARY_TRACT	RPS6KB1--LASP1	3	0	RPS6KB1	1240	chr17:57970686:+	LASP1	32896	chr17:37070578:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0522	0	RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	SCYL2--RPS27A	3	0	SCYL2	1257	chr12:100661174:+	RPS27A	30466	chr2:55459944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0522	0	SCYL2->SCY1_like_pseudokinase_2,chr12:100660918-100735502:+,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	SPECC1L--MALAT1	3	0	SPECC1L	19567	chr22:24807671:+	MALAT1	30570	chr11:65268024:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,MALAT1->chr11:65265233-65273940:+,metastasis_associated_lung_adenocarcinoma_transcript_1_(non-protein_coding)	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	TMEM5--UBR4	3	0	TMEM5	4639	chr12:64178852:+	UBR4	27854	chr1:19505714:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0522	0	TMEM5->chr12:64173583-64203338:+,transmembrane_protein_5,UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	TMEM97--B2M	3	0	TMEM97	6583	chr17:26655695:+	B2M	14668	chr15:45010233:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	TMEM97->chr17:26646121-26655707:+,transmembrane_protein_97,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	UBLC1_URINARY_TRACT	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	ABR--SMYD4	2	1	ABR	22312	chr17:970317:-	SMYD4	52509	chr17:1690898:-	ONLY_REF_SPLICE	YES	4	5	0.43	0.38	0.0348	0.0174	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-	UBLC1_URINARY_TRACT	0.38	0.43	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	PLEKHA2--BOD1L1	2	1	PLEKHA2	4056	chr8:38793568:+	BOD1L1	29582	chr4:13615285:-	ONLY_REF_SPLICE	YES	0	6	1	0.33	0.0348	0.0174	PLEKHA2->Oncogene{Bushman},chr8:38758753-38831428:+,pleckstrin_homology_domain_containing_A2,BOD1L1->biorientation_of_chromosomes_in_cell_division_1_like_1,chr4:13570362-13629347:-	UBLC1_URINARY_TRACT	0.33	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	BRIX1--DROSHA	2	0	BRIX1	6563	chr5:34922873:+	DROSHA	50803	chr5:31407052:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	BRIX1->BRX1,_biogenesis_of_ribosomes,chr5:34915481-34926101:+,DROSHA->chr5:31400604-31532303:-,drosha_ribonuclease_III	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	CASC15--E2F3	2	0	CASC15	10325	chr6:21909834:+	E2F3	37651	chr6:20480077:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	CASC15->cancer_susceptibility_candidate_15_(non-protein_coding),chr6:21665003-22214734:+,E2F3->E2F_transcription_factor_3,Oncogene{Bushman},chr6:20402398-20493941:+	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	CDH2--VMP1	2	0	CDH2	21509	chr18:25543321:-	VMP1	42108	chr17:57915656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	CDH2->cadherin_2,chr18:25530930-25757410:-,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	DDX52--CTB-58E17.9	2	0	DDX52	11098	chr17:35986834:-	CTB-58E17.9	26835	chr17:36875520:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	DDX52->DEAD-box_helicase_52,chr17:35969787-36003493:-,CTB-58E17.9->chr17:36871581-36876525:-	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	FNBP1L--TIMP2	2	0	FNBP1L	2291	chr1:93965140:+	TIMP2	29000	chr17:76853728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	FNBP1L->chr1:93913688-94020218:+,formin_binding_protein_1_like,TIMP2->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_2,chr17:76849059-76921469:-	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	FRYL--METTL23	2	0	FRYL	4609	chr4:48686690:-	METTL23	86215	chr17:74729375:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,METTL23->chr17:74722912-74730018:+,methyltransferase_like_23	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	HADHB--EMC9	2	0	HADHB	16296	chr2:26507825:+	EMC9	23261	chr14:24608998:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	HADHB->chr2:26466038-26513336:+,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_beta_subunit,EMC9->ER_membrane_protein_complex_subunit_9,chr14:24608174-24610797:-	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	KIAA0020--MLLT4	2	0	KIAA0020	5321	chr9:2833357:-	MLLT4	61376	chr6:168366437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	KIAA0020->chr9:2720469-2844241:-,MLLT4->Oncogene{Bushman},chr6:168227602-168372703:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_4	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	MANEA--SF3B1	2	0	MANEA	2678	chr6:96034859:+	SF3B1	19704	chr2:198283312:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	MANEA->chr6:96025419-96057333:+,mannosidase_endo-alpha,SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	MKLN1-AS1--RPS6KC1	2	0	MKLN1-AS1	13605	chr7:130630479:-	RPS6KC1	33842	chr1:213415912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	MKLN1-AS1->chr7:130626519-130794935:-,RPS6KC1->chr1:213224589-213448116:+,ribosomal_protein_S6_kinase_C1	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	MRPS9--BMPR2	2	0	MRPS9	1245	chr2:105654685:+	BMPR2	27720	chr2:203407034:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	MRPS9->chr2:105654441-105716418:+,mitochondrial_ribosomal_protein_S9,BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	NCK1--MSL2	2	0	NCK1	1112	chr3:136581161:+	MSL2	18208	chr3:135871580:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	GTEx_v2:{count=2;pct=0.02%;dist=Muscle_-_Skeletal=1,Spleen=1},NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila)	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	2	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	RBM33--SEC61G	2	0	RBM33	5993	chr7:155473602:+	SEC61G	34438	chr7:54827027:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	RBM33->RNA_binding_motif_protein_33,chr7:155437145-155574179:+,SEC61G->Sec61_translocon_gamma_subunit,chr7:54819943-54827667:-	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	RGL1--RP5-855F14.2	2	0	RGL1	6007	chr1:183775619:+	RP5-855F14.2	30353	chr1:234705570:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1,RP5-855F14.2->chr1:234701044-234705834:+	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	RNF139--DEGS1	2	0	RNF139	1553	chr8:125487531:+	DEGS1	11554	chr1:224377279:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	RNF139->Oncogene{Bushman},chr8:125486979-125500155:+,ring_finger_protein_139,DEGS1->chr1:224363458-224381143:+,delta(4)-desaturase,_sphingolipid_1	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	UBLC1_URINARY_TRACT	1	1	0.0348	FALSE	416	2512	207	587	0	FALSE	ACH-000741
UBLC1_URINARY_TRACT	RP11-152F13.7--CFI	2	0	RP11-152F13.7	1307	chr15:82945079:+	CFI	13913	chr4:110682848:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	RP11-152F13.7->chr15:82944773-82974312:+,CFI->chr4:110661852-110723335:-,complement_factor_I	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	SPATA6--RP4-601K24.1	2	0	SPATA6	6677	chr1:48877136:-	RP4-601K24.1	30948	chr1:83462398:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	SPATA6->chr1:48761044-48937845:-,spermatogenesis_associated_6,RP4-601K24.1->chr1:83368866-83632498:+	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	UBR4--FAU	2	0	UBR4	41004	chr1:19474487:-	FAU	97427	chr11:64889116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4,FAU->Finkel-Biskis-Reilly_murine_sarcoma_virus_(FBR-MuSV)_ubiquitously_expressed,chr11:64888100-64889945:-	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	WDR59--R3HDM2	2	0	WDR59	3538	chr16:75018862:-	R3HDM2	40676	chr12:57789601:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-,R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	WHSC1--PTP4A2	2	0	WHSC1	15609	chr4:1936989:+	PTP4A2	57129	chr1:32381588:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
UBLC1_URINARY_TRACT	ZCCHC7--B4GALT1	2	0	ZCCHC7	3765	chr9:37126939:+	B4GALT1	23692	chr9:33135422:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7,B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-	UBLC1_URINARY_TRACT	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000741
MDAMB134VI_BREAST	TIMM23B--LINC00843	153	35	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.2059	0.5046	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MDAMB134VI_BREAST	1	1	2.7105	TRUE	508	994	45	981	0	FALSE	ACH-000044
MDAMB134VI_BREAST	ANK1--ZMAT4	124	51	ANK1	36511	chr8:41542062:-	ZMAT4	58937	chr8:40554920:-	ONLY_REF_SPLICE	YES	12	9	0.94	0.95	1.7878	0.7353	ANK1->ankyrin_1,chr8:41510739-41754280:-,ZMAT4->chr8:40388109-40755352:-,zinc_finger_matrin-type_4	MDAMB134VI_BREAST	0.94	0.95	2.5231	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	PROSC--OR7E11P	98	47	PROSC	1166	chr8:37620276:+	OR7E11P	12394	chr11:67504032:-	INCL_NON_REF_SPLICE	YES	324	0	0.31	1	1.4129	0.6776	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),OR7E11P->chr11:67503079-67504030:-,olfactory_receptor_family_7_subfamily_E_member_11_pseudogene	MDAMB134VI_BREAST	0.31	1	2.0905	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	NRIP1--AF127936.7	85	9	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.94	1	1.2255	0.1298	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB134VI_BREAST	0.94	1	1.3553	FALSE	292	1546	117	613	0	FALSE	ACH-000044
MDAMB134VI_BREAST	TIMM23--RP11-464F9.1	87	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	204	3	0.3	0.97	1.2543	0.0144	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MDAMB134VI_BREAST	0.3	0.97	1.2687	TRUE	519	3926	326	965	0	FALSE	ACH-000044
MDAMB134VI_BREAST	PROSC--OR7E11P	57	38	PROSC	1166	chr8:37620276:+	OR7E11P	12469	chr11:67503957:-	INCL_NON_REF_SPLICE	YES	324	0	0.23	1	0.8218	0.5479	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),OR7E11P->chr11:67503079-67504030:-,olfactory_receptor_family_7_subfamily_E_member_11_pseudogene	MDAMB134VI_BREAST	0.23	1	1.3697	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	MT-TA--MT-TC	32	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4614	0.1153	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB134VI_BREAST	1	1	0.5767	FALSE	462	80	0	856	0	FALSE	ACH-000044
MDAMB134VI_BREAST	ZNF654--HMGB2	34	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4902	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MDAMB134VI_BREAST	1	1	0.4902	TRUE	0	0	0	518	0	FALSE	ACH-000044
MDAMB134VI_BREAST	DMTN--AP002387.1	25	24	DMTN	9799	chr8:21925193:+	AP002387.1	30558	chr11:71105004:-	ONLY_REF_SPLICE	YES	13	0	0.79	1	0.3604	0.346	DMTN->chr8:21906506-21940038:+,dematin_actin_binding_protein,AP002387.1->chr11:71093647-71134469:-	MDAMB134VI_BREAST	0.79	1	0.7064	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	KCTD21-AS1--PLEKHB1	17	10	KCTD21-AS1	5112	chr11:77860139:+	PLEKHB1	21485	chr11:73371798:+	ONLY_REF_SPLICE	YES	3	18	0.9	0.6	0.2451	0.1442	KCTD21-AS1->KCTD21_antisense_RNA_1,chr11:77850817-77886369:+,PLEKHB1->Oncogene{Bushman},chr11:73357223-73373864:+,pleckstrin_homology_domain_containing_B1	MDAMB134VI_BREAST	0.6	0.9	0.3893	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	NRIP1--AF127936.7	15	14	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	75	0	0.28	1	0.2163	0.2018	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB134VI_BREAST	0.28	1	0.4181	FALSE	125	705	46	456	0	FALSE	ACH-000044
MDAMB134VI_BREAST	NRIP1--AF127936.7	11	21	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	111	0	0.22	1	0.1586	0.3028	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB134VI_BREAST	0.22	1	0.4614	FALSE	164	806	69	479	0	FALSE	ACH-000044
MDAMB134VI_BREAST	C15orf57--CBX3	11	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	31	38	0.37	0.32	0.1586	0.1009	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MDAMB134VI_BREAST	0.32	0.37	0.2595	TRUE	267	562	48	632	0	FALSE	ACH-000044
MDAMB134VI_BREAST	SHANK2--KDM2A	11	2	SHANK2	29853	chr11:70644548:-	KDM2A	67810	chr11:66947550:+	ONLY_REF_SPLICE	YES	20	17	0.39	0.43	0.1586	0.0288	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	MDAMB134VI_BREAST	0.39	0.43	0.1874	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	MT-TA--MT-TC	8	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1153	0.0865	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB134VI_BREAST	1	1	0.2018	FALSE	462	80	0	856	0	FALSE	ACH-000044
MDAMB134VI_BREAST	VTI1A--RP11-57H14.3	9	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	21	0	0.32	1	0.1298	0.0144	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	MDAMB134VI_BREAST	0.32	1	0.1442	FALSE	272	151	14	158	0	FALSE	ACH-000044
MDAMB134VI_BREAST	KCTD21-AS1--PLEKHB1	7	5	KCTD21-AS1	2609	chr11:77852748:+	PLEKHB1	21485	chr11:73371798:+	ONLY_REF_SPLICE	YES	72	18	0.14	0.4	0.1009	0.0721	KCTD21-AS1->KCTD21_antisense_RNA_1,chr11:77850817-77886369:+,PLEKHB1->Oncogene{Bushman},chr11:73357223-73373864:+,pleckstrin_homology_domain_containing_B1	MDAMB134VI_BREAST	0.14	0.4	0.173	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	RP11-444D3.1--SOX5	7	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1009	0.0433	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MDAMB134VI_BREAST	1	1	0.1442	TRUE	477	1352	189	275	0	FALSE	ACH-000044
MDAMB134VI_BREAST	RP11-96H19.1--RP11-446N19.1	6	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.83	0.91	0.0865	0.0577	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB134VI_BREAST	0.83	0.91	0.1442	FALSE	515	4851	409	746	0	FALSE	ACH-000044
MDAMB134VI_BREAST	EFR3A--ANK1	5	4	EFR3A	7410	chr8:132962337:+	ANK1	36268	chr8:41615655:-	ONLY_REF_SPLICE	YES	4	12	0.69	0.43	0.0721	0.0577	{Klijn_CCL:Breast=1},EFR3A->EFR3_homolog_A,chr8:132916335-133025889:+,ANK1->ankyrin_1,chr8:41510739-41754280:-	MDAMB134VI_BREAST	0.43	0.69	0.1298	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	RP11-141M1.3--STARD13	5	3	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	3	0.89	0.73	0.0721	0.0433	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	MDAMB134VI_BREAST	0.73	0.89	0.1154	FALSE	141	264	50	91	0	FALSE	ACH-000044
MDAMB134VI_BREAST	KANSL1--LRRC37A3	5	2	KANSL1	8599	chr17:44230270:-	LRRC37A3	40469	chr17:62888718:-	ONLY_REF_SPLICE	YES	35	30	0.17	0.19	0.0721	0.0288	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:8=pct:1.2],Nerve=[count:4=pct:2.4],Skin=[count:2=pct:0.6],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Prostate=[count:1=pct:1.6]},KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	MDAMB134VI_BREAST	0.17	0.19	0.1009	TRUE	15	5	1	2	0	FALSE	ACH-000044
MDAMB134VI_BREAST	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0721	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB134VI_BREAST	1	1	0.0721	FALSE	462	80	0	856	0	FALSE	ACH-000044
MDAMB134VI_BREAST	TULP4--RP11-732M18.3	4	2	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	42	1	0.12	0.86	0.0577	0.0288	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	MDAMB134VI_BREAST	0.12	0.86	0.0865	TRUE	126	140	6	21	0	FALSE	ACH-000044
MDAMB134VI_BREAST	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0433	0.0721	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB134VI_BREAST	0.8	1	0.1154	FALSE	407	2205	196	549	0	FALSE	ACH-000044
MDAMB134VI_BREAST	EFCAB11--RP11-944C7.1	3	4	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	60	0	0.1	1	0.0433	0.0577	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	MDAMB134VI_BREAST	0.1	1	0.101	TRUE	31	91	1	18	0	FALSE	ACH-000044
MDAMB134VI_BREAST	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0577	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MDAMB134VI_BREAST	1	1	0.0577	TRUE	0	0	0	434	0	FALSE	ACH-000044
MDAMB134VI_BREAST	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.0433	0.0577	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB134VI_BREAST	0.88	1	0.101	FALSE	467	2173	244	435	0	FALSE	ACH-000044
MDAMB134VI_BREAST	CLNS1A--B3GNT6	3	3	CLNS1A	14074	chr11:77322360:-	B3GNT6	22528	chr11:76750596:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0433	0.0433	CLNS1A->chloride_nucleotide-sensitive_channel_1A,chr11:77225981-77348850:-,B3GNT6->Oncogene{Bushman},UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_6,chr11:76745385-76753096:+	MDAMB134VI_BREAST	1	1	0.0866	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	TULP4--RP11-732M18.3	3	3	TULP4	2609	chr6:158735300:+	RP11-732M18.3	28124	chr6:158703295:+	ONLY_REF_SPLICE	YES	42	0	0.12	1	0.0433	0.0433	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	MDAMB134VI_BREAST	0.12	1	0.0866	TRUE	121	131	5	12	0	FALSE	ACH-000044
MDAMB134VI_BREAST	C15orf57--CBX3	3	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	30	38	0.14	0.12	0.0433	0.0288	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MDAMB134VI_BREAST	0.12	0.14	0.0721	TRUE	267	562	48	632	0	FALSE	ACH-000044
MDAMB134VI_BREAST	RP13-188A5.1--KLF8	3	2	RP13-188A5.1	2795	chrX:56041394:+	KLF8	7929	chrX:56276664:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.83	0.0433	0.0288	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	MDAMB134VI_BREAST	0.83	1	0.0721	TRUE	1	15	1	5	11	FALSE	ACH-000044
MDAMB134VI_BREAST	ACTR3C--RP11-728K20.1	3	1	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	6	0	0.4	1	0.0433	0.0144	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	MDAMB134VI_BREAST	0.4	1	0.0577	TRUE	0	5	0	16	1	TRUE	ACH-000044
MDAMB134VI_BREAST	MT-CO3--MT-ATP6	3	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0.0144	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MDAMB134VI_BREAST	1	1	0.0577	FALSE	189	492	56	216	0	FALSE	ACH-000044
MDAMB134VI_BREAST	RP1-34H18.1--NAV3	3	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0433	0.0144	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	MDAMB134VI_BREAST	1	1	0.0577	TRUE	254	575	65	124	0	FALSE	ACH-000044
MDAMB134VI_BREAST	VTI1A--RP11-57H14.3	3	1	VTI1A	13856	chr10:114428768:+	RP11-57H14.3	23363	chr10:114648494:+	INCL_NON_REF_SPLICE	YES	21	0	0.16	1	0.0433	0.0144	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	MDAMB134VI_BREAST	0.16	1	0.0577	FALSE	272	151	14	158	0	FALSE	ACH-000044
MDAMB134VI_BREAST	RNF152--RP11-879F14.1	3	0	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0433	0	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	MDAMB134VI_BREAST	1	1	0.0433	FALSE	275	472	65	43	0	FALSE	ACH-000044
MDAMB134VI_BREAST	EFR3A--ANK1	2	2	EFR3A	6288	chr8:132958880:+	ANK1	36268	chr8:41615655:-	ONLY_REF_SPLICE	YES	5	12	0.44	0.25	0.0288	0.0288	{Klijn_CCL:Breast=1},EFR3A->EFR3_homolog_A,chr8:132916335-133025889:+,ANK1->ankyrin_1,chr8:41510739-41754280:-	MDAMB134VI_BREAST	0.25	0.44	0.0576	TRUE	0	0	0	1	0	TRUE	ACH-000044
MDAMB134VI_BREAST	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0288	0.0288	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MDAMB134VI_BREAST	0.67	1	0.0576	FALSE	16	356	14	466	0	FALSE	ACH-000044
MDAMB134VI_BREAST	RP13-188A5.1--KLF8	2	2	RP13-188A5.1	1678	chrX:55935233:+	KLF8	6745	chrX:56259591:+	ONLY_REF_SPLICE	NO	2	0	0.67	1	0.0288	0.0288	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	MDAMB134VI_BREAST	0.67	1	0.0576	TRUE	3	12	3	6	0	FALSE	ACH-000044
MDAMB134VI_BREAST	RNF152--RP11-879F14.1	2	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	NO	5	0	0.38	1	0.0288	0.0144	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	MDAMB134VI_BREAST	0.38	1	0.0432	FALSE	119	124	24	18	0	FALSE	ACH-000044
MDAMB134VI_BREAST	ACTR3C--RP11-728K20.1	2	0	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	18809	chr7:149589487:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	MDAMB134VI_BREAST	1	1	0.0288	TRUE	0	3	0	4	2	TRUE	ACH-000044
MDAMB134VI_BREAST	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	MDAMB134VI_BREAST	1	1	0.0288	TRUE	347	1186	183	220	0	FALSE	ACH-000044
MDAMB134VI_BREAST	DANCR--PHF14	2	0	DANCR	1530	chr4:53579126:+	PHF14	31809	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	MDAMB134VI_BREAST	1	1	0.0288	TRUE	0	5	0	5	1	TRUE	ACH-000044
MDAMB134VI_BREAST	MINOS1--CAPZB	2	0	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	MDAMB134VI_BREAST	1	1	0.0288	TRUE	2	7	0	21	0	FALSE	ACH-000044
MDAMB134VI_BREAST	NRIP1--AF127936.7	1	4	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	111	26	0.04	0.16	0.0144	0.0577	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB134VI_BREAST	0.04	0.16	0.0721	FALSE	8	57	1	47	0	FALSE	ACH-000044
MDAMB134VI_BREAST	RBM23--MRPL52	2	0	RBM23	9267	chr14:23375404:-	MRPL52	21923	chr14:23303381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_INVERSION:-:+:[65608],RBM23->RNA_binding_motif_protein_23,chr14:23369854-23388393:-,MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	MDAMB134VI_BREAST	1	1	0.0288	TRUE	0	3	0	2	1	TRUE	ACH-000044
MDAMB134VI_BREAST	RP11-141M1.3--STARD13	1	4	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	NO	1	3	0.83	0.62	0.0144	0.0577	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	MDAMB134VI_BREAST	0.62	0.83	0.0721	FALSE	49	120	16	70	0	FALSE	ACH-000044
MDAMB134VI_BREAST	KANSL1--LRRC37A3	1	2	KANSL1	7536	chr17:44248221:-	LRRC37A3	36463	chr17:62893772:-	ONLY_REF_SPLICE	YES	33	13	0.08	0.19	0.0144	0.0288	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:8=pct:1.2],Nerve=[count:4=pct:2.4],Skin=[count:2=pct:0.6],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Prostate=[count:1=pct:1.6]},KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	MDAMB134VI_BREAST	0.08	0.19	0.0432	TRUE	1	0	0	1	0	FALSE	ACH-000044
MDAMB134VI_BREAST	RP13-188A5.1--KLF8	1	2	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	2	1	0.6	0.75	0.0144	0.0288	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	MDAMB134VI_BREAST	0.6	0.75	0.0432	TRUE	10	78	6	20	0	FALSE	ACH-000044
MDAMB134VI_BREAST	RP13-188A5.1--KLF8	1	2	RP13-188A5.1	1678	chrX:55935233:+	KLF8	9003	chrX:56291613:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0144	0.0288	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	MDAMB134VI_BREAST	0.6	1	0.0432	TRUE	1	9	1	5	7	FALSE	ACH-000044
MDAMB134VI_BREAST	TULP4--RP11-732M18.3	1	2	TULP4	4900	chr6:158850929:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	63	1	0.05	0.75	0.0144	0.0288	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	MDAMB134VI_BREAST	0.05	0.75	0.0432	TRUE	3	5	0	1	0	FALSE	ACH-000044
MDAMB134VI_BREAST	ALG14--ABCD3	1	1	ALG14	2335	chr1:95530422:-	ABCD3	33963	chr1:94953098:+	ONLY_REF_SPLICE	YES	103	110	0.02	0.02	0.0144	0.0144	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-,ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+	MDAMB134VI_BREAST	0.02	0.02	0.0288	TRUE	0	0	0	2	0	FALSE	ACH-000044
MDAMB134VI_BREAST	CFD--XBP1	1	1	CFD	3504	chr19:861956:+	XBP1	9311	chr22:29195141:-	ONLY_REF_SPLICE	NO	71	1165	0.03	0	0.0144	0.0144	CFD->chr19:859453-863453:+,complement_factor_D_(adipsin),XBP1->X-box_binding_protein_1,chr22:29190543-29196585:-	MDAMB134VI_BREAST	0	0.03	0.0288	FALSE	0	0	0	1	0	FALSE	ACH-000044
MDAMB134VI_BREAST	FGFR1--CANX	1	1	FGFR1	9195	chr8:38314874:-	CANX	38268	chr5:179132680:+	ONLY_REF_SPLICE	NO	1561	233	0	0.01	0.0144	0.0144	FGFR1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr8:38268656-38326352:-,fibroblast_growth_factor_receptor_1,CANX->calnexin,chr5:179105629-179157926:+	MDAMB134VI_BREAST	0	0.01	0.0288	FALSE	0	0	0	1	0	FALSE	ACH-000044
MDAMB134VI_BREAST	HP1BP3--CAPZB	1	1	HP1BP3	1129	chr1:21113688:-	CAPZB	26857	chr1:19746244:-	ONLY_REF_SPLICE	YES	33	134	0.06	0.01	0.0144	0.0144	GTEx_FI:{Small_Intestine=[count:1=pct:1.8],Blood=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	MDAMB134VI_BREAST	0.01	0.06	0.0288	FALSE	3	0	0	4	0	FALSE	ACH-000044
MDAMB134VI_BREAST	KANSL1--LRRC37A3	1	1	KANSL1	8599	chr17:44230270:-	LRRC37A3	41541	chr17:62885870:-	ONLY_REF_SPLICE	YES	35	22	0.05	0.08	0.0144	0.0144	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:8=pct:1.2],Nerve=[count:4=pct:2.4],Skin=[count:2=pct:0.6],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Prostate=[count:1=pct:1.6]},KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	MDAMB134VI_BREAST	0.05	0.08	0.0288	TRUE	0	0	0	1	0	FALSE	ACH-000044
MDAMB134VI_BREAST	KANSL1--LRRC37A3	1	1	KANSL1	7536	chr17:44248221:-	LRRC37A3	40469	chr17:62888718:-	ONLY_REF_SPLICE	YES	33	30	0.06	0.06	0.0144	0.0144	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:8=pct:1.2],Nerve=[count:4=pct:2.4],Skin=[count:2=pct:0.6],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Prostate=[count:1=pct:1.6]},KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	MDAMB134VI_BREAST	0.06	0.06	0.0288	TRUE	3	3	1	1	0	FALSE	ACH-000044
MDAMB134VI_BREAST	LDLRAD3--PRR5L	1	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	20830	chr11:36350668:+	ONLY_REF_SPLICE	YES	40	1	0.05	0.67	0.0144	0.0144	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	MDAMB134VI_BREAST	0.05	0.67	0.0288	FALSE	2	24	3	12	0	FALSE	ACH-000044
MDAMB134VI_BREAST	LINC00595--LINC00856	1	1	LINC00595	1159	chr10:80027243:+	LINC00856	18492	chr10:80285087:+	ONLY_REF_SPLICE	YES	12	0	0.14	1	0.0144	0.0144	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[63267],LINC00595->chr10:80027085-80090352:+,long_intergenic_non-protein_coding_RNA_595,LINC00856->chr10:80008505-80434724:+,long_intergenic_non-protein_coding_RNA_856	MDAMB134VI_BREAST	0.14	1	0.0288	FALSE	0	15	1	2	0	FALSE	ACH-000044
MDAMB134VI_BREAST	MB21D2--FGF12	1	1	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	NO	13	49	0.13	0.04	0.0144	0.0144	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	MDAMB134VI_BREAST	0.04	0.13	0.0288	FALSE	0	17	0	46	0	FALSE	ACH-000044
MDAMB134VI_BREAST	PEG3--NLRP2	1	1	PEG3	2234	chr19:57347386:-	NLRP2	39732	chr19:55505637:+	ONLY_REF_SPLICE	NO	240	35	0.01	0.05	0.0144	0.0144	PEG3->Oncogene{Bushman},chr19:57321445-57352096:-,paternally_expressed_3,NLRP2->NLR_family,_pyrin_domain_containing_2,Oncogene{Bushman},chr19:55464498-55512510:+	MDAMB134VI_BREAST	0.01	0.05	0.0288	FALSE	0	0	0	1	0	FALSE	ACH-000044
MDAMB134VI_BREAST	RAB6A--KCTD21	1	1	RAB6A	8988	chr11:73418465:-	KCTD21	22600	chr11:77885629:-	ONLY_REF_SPLICE	YES	866	0	0	1	0.0144	0.0144	RAB6A->RAB6A,_member_RAS_oncogene_family,chr11:73386683-73472182:-,KCTD21->chr11:77882295-77899868:-,potassium_channel_tetramerization_domain_containing_21	MDAMB134VI_BREAST	0	1	0.0288	FALSE	0	0	0	1	0	FALSE	ACH-000044
MDAMB134VI_BREAST	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	24436	chr10:114650725:+	ONLY_REF_SPLICE	YES	21	0	0.09	1	0.0144	0.0144	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	MDAMB134VI_BREAST	0.09	1	0.0288	FALSE	21	3	0	16	0	FALSE	ACH-000044
MDAMB134VI_BREAST	ZNF839--HAT1	1	1	ZNF839	1290	chr14:102784003:+	HAT1	26754	chr2:172841096:+	ONLY_REF_SPLICE	YES	0	273	1	0.01	0.0144	0.0144	ZNF839->chr14:102783714-102809044:+,zinc_finger_protein_839,HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1	MDAMB134VI_BREAST	0.01	1	0.0288	FALSE	0	0	0	1	0	FALSE	ACH-000044
SNU216_STOMACH	KANSL1--GAST	1481	355	KANSL1	4754	chr17:44270189:-	GAST	32874	chr17:39871684:+	ONLY_REF_SPLICE	YES	12	0	0.99	1	14.611	3.5023	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,GAST->chr17:39868578-39872221:+,gastrin	SNU216_STOMACH	0.99	1	18.1133	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	MSH5--AIF1	876	347	MSH5	3633	chr6:31710947:+	AIF1	24171	chr6:31584121:+	ONLY_REF_SPLICE	YES	16	0	0.99	1	8.6423	3.4234	MSH5->chr6:31707725-31732622:+,mutS_homolog_5,AIF1->allograft_inflammatory_factor_1,chr6:31582961-31584798:+	SNU216_STOMACH	0.99	1	12.0657	TRUE	0	0	0	2	0	TRUE	ACH-000466
SNU216_STOMACH	KANSL1--GAST	563	190	KANSL1	2697	chr17:44301037:-	GAST	32874	chr17:39871684:+	ONLY_REF_SPLICE	YES	9	0	0.99	1	5.5543	1.8745	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,GAST->chr17:39868578-39872221:+,gastrin	SNU216_STOMACH	0.99	1	7.4288	TRUE	0	1	0	1	1	TRUE	ACH-000466
SNU216_STOMACH	KLK5--KLK6	343	2	KLK5	3986	chr19:51451896:-	KLK6	14361	chr19:51462572:-	ONLY_REF_SPLICE	YES	1737	2272	0.17	0.13	3.3839	0.0197	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[5538],KLK5->Oncogene{Bushman},chr19:51446559-51456349:-,kallikrein_related_peptidase_5,KLK6->Oncogene{Bushman},chr19:51461887-51472929:-,kallikrein_related_peptidase_6	SNU216_STOMACH	0.13	0.17	3.4036	TRUE	0	0	0	2	0	TRUE	ACH-000466
SNU216_STOMACH	KANSL1--GAST	137	412	KANSL1	5158	chr17:44269785:-	GAST	32874	chr17:39871684:+	ONLY_REF_SPLICE	YES	16	0	0.97	1	1.3516	4.0646	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,GAST->chr17:39868578-39872221:+,gastrin	SNU216_STOMACH	0.97	1	5.4162	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	KANSL1--GAST	148	45	KANSL1	2697	chr17:44301037:-	GAST	33220	chr17:39872030:+	ONLY_REF_SPLICE	YES	9	293	0.96	0.4	1.4601	0.444	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,GAST->chr17:39868578-39872221:+,gastrin	SNU216_STOMACH	0.4	0.96	1.9041	TRUE	0	1	0	1	1	TRUE	ACH-000466
SNU216_STOMACH	CDC42SE2--LYRM7	133	30	CDC42SE2	6369	chr5:130651837:+	LYRM7	21362	chr5:130515788:+	ONLY_REF_SPLICE	YES	104	1	0.61	0.99	1.3121	0.296	LOCAL_REARRANGEMENT:+:[40067],CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,LYRM7->LYR_motif_containing_7,chr5:130506503-130541119:+	SNU216_STOMACH	0.61	0.99	1.6081	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	MSH5--AIF1	27	374	MSH5	3747	chr6:31711061:+	AIF1	24020	chr6:31583970:+	INCL_NON_REF_SPLICE	YES	13	1	0.97	1	0.2664	3.6897	MSH5->chr6:31707725-31732622:+,mutS_homolog_5,AIF1->allograft_inflammatory_factor_1,chr6:31582961-31584798:+	SNU216_STOMACH	0.97	1	3.9561	TRUE	0	0	0	2	0	TRUE	ACH-000466
SNU216_STOMACH	KANSL1--GAST	8	357	KANSL1	4754	chr17:44270189:-	GAST	32855	chr17:39871665:+	INCL_NON_REF_SPLICE	YES	12	0	0.97	1	0.0789	3.522	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,GAST->chr17:39868578-39872221:+,gastrin	SNU216_STOMACH	0.97	1	3.6009	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	SHISA9--U91319.1	81	15	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	49	0	0.66	1	0.7991	0.148	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	SNU216_STOMACH	0.66	1	0.9471	FALSE	4	37	0	19	0	FALSE	ACH-000466
SNU216_STOMACH	TIMM23B--LINC00843	79	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7794	0.2072	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU216_STOMACH	0.99	1	0.9866	TRUE	508	994	45	981	0	FALSE	ACH-000466
SNU216_STOMACH	DNAJC8--C2orf42	69	17	DNAJC8	9689	chr1:28530258:-	C2orf42	23693	chr2:70396793:-	ONLY_REF_SPLICE	YES	242	8	0.26	0.91	0.6807	0.1677	DNAJC8->DnaJ_heat_shock_protein_family_(Hsp40)_member_C8,chr1:28525967-28559536:-,C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42	SNU216_STOMACH	0.26	0.91	0.8484	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	KANSL1--GAST	21	203	KANSL1	3827	chr17:44271116:-	GAST	32874	chr17:39871684:+	ONLY_REF_SPLICE	YES	9	0	0.96	1	0.2072	2.0027	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,GAST->chr17:39868578-39872221:+,gastrin	SNU216_STOMACH	0.96	1	2.2099	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	KANSL1--GAST	48	62	KANSL1	4754	chr17:44270189:-	GAST	33220	chr17:39872030:+	ONLY_REF_SPLICE	YES	12	293	0.9	0.27	0.4735	0.6117	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,GAST->chr17:39868578-39872221:+,gastrin	SNU216_STOMACH	0.27	0.9	1.0852	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	MT-TA--MT-TC	58	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5722	0.0691	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU216_STOMACH	1	1	0.6413	FALSE	462	80	0	856	0	FALSE	ACH-000466
SNU216_STOMACH	LRRC37A3--LASP1	44	31	LRRC37A3	12602	chr17:62882204:-	LASP1	34334	chr17:37071296:+	ONLY_REF_SPLICE	YES	13	663	0.85	0.1	0.4341	0.3058	LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3,LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+	SNU216_STOMACH	0.1	0.85	0.7399	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	TIMM23--RP11-464F9.1	45	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	131	4	0.26	0.92	0.444	0.0099	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU216_STOMACH	0.26	0.92	0.4539	TRUE	519	3926	326	965	0	FALSE	ACH-000466
SNU216_STOMACH	ZNF654--HMGB2	42	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4144	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU216_STOMACH	1	1	0.4144	TRUE	0	0	0	518	0	FALSE	ACH-000466
SNU216_STOMACH	LASP1--C17orf75	38	2	LASP1	7268	chr17:37054772:+	C17orf75	29266	chr17:30651793:-	ONLY_REF_SPLICE	YES	527	0	0.07	1	0.3749	0.0197	LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+,C17orf75->chr17:30651584-30677042:-,chromosome_17_open_reading_frame_75	SNU216_STOMACH	0.07	1	0.3946	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	MSH5--AIF1	2	117	MSH5	2339	chr6:31709063:+	AIF1	24171	chr6:31584121:+	ONLY_REF_SPLICE	YES	209	0	0.36	1	0.0197	1.1543	MSH5->chr6:31707725-31732622:+,mutS_homolog_5,AIF1->allograft_inflammatory_factor_1,chr6:31582961-31584798:+	SNU216_STOMACH	0.36	1	1.174	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	KANSL1--GAST	9	69	KANSL1	5158	chr17:44269785:-	GAST	33220	chr17:39872030:+	ONLY_REF_SPLICE	YES	16	293	0.83	0.21	0.0888	0.6807	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,GAST->chr17:39868578-39872221:+,gastrin	SNU216_STOMACH	0.21	0.83	0.7695	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	NPM1P24--SET	26	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2565	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU216_STOMACH	1	1	0.2565	TRUE	0	0	0	434	0	FALSE	ACH-000466
SNU216_STOMACH	C15orf57--CBX3	18	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	27	42	0.53	0.42	0.1776	0.1184	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU216_STOMACH	0.42	0.53	0.296	TRUE	267	562	48	632	0	FALSE	ACH-000466
SNU216_STOMACH	MT-ND6--MT-TE	20	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1973	0.0099	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU216_STOMACH	1	1	0.2072	FALSE	499	1288	110	792	0	FALSE	ACH-000466
SNU216_STOMACH	ABCC1--FAM195A	15	20	ABCC1	16353	chr16:16165586:+	FAM195A	44368	chr16:692120:+	ONLY_REF_SPLICE	YES	63	37	0.36	0.49	0.148	0.1973	{Klijn_CCL:Stomach=1},ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,FAM195A->chr16:691813-698474:+	SNU216_STOMACH	0.36	0.49	0.3453	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	MT-ND6--MT-TE	17	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1677	0.0099	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU216_STOMACH	1	1	0.1776	FALSE	499	1288	110	792	0	FALSE	ACH-000466
SNU216_STOMACH	ABCC1--FAM195A	12	10	ABCC1	16353	chr16:16165586:+	FAM195A	46443	chr16:697417:+	ONLY_REF_SPLICE	YES	63	132	0.26	0.14	0.1184	0.0987	{Klijn_CCL:Stomach=1},ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,FAM195A->chr16:691813-698474:+	SNU216_STOMACH	0.14	0.26	0.2171	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	RP11-96H19.1--RP11-446N19.1	13	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1283	0.0395	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU216_STOMACH	0.94	1	0.1678	FALSE	515	4851	409	746	0	FALSE	ACH-000466
SNU216_STOMACH	ABCC1--FAM195A	10	13	ABCC1	16353	chr16:16165586:+	FAM195A	45498	chr16:696472:+	ONLY_REF_SPLICE	YES	63	99	0.27	0.19	0.0987	0.1283	{Klijn_CCL:Stomach=1},ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,FAM195A->chr16:691813-698474:+	SNU216_STOMACH	0.19	0.27	0.227	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	CHCHD3--KHDRBS2	13	1	CHCHD3	7933	chr7:132659929:-	KHDRBS2	25481	chr6:62611276:-	ONLY_REF_SPLICE	YES	140	0	0.09	1	0.1283	0.0099	CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,KHDRBS2->KH_domain_containing,_RNA_binding,_signal_transduction_associated_2,chr6:62389865-62996132:-	SNU216_STOMACH	0.09	1	0.1382	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	HSP90AB1--MT-RNR2	11	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1085	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU216_STOMACH	1	1	0.1085	FALSE	13	9	0	364	0	FALSE	ACH-000466
SNU216_STOMACH	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1085	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU216_STOMACH	1	1	0.1085	TRUE	0	0	0	434	0	FALSE	ACH-000466
SNU216_STOMACH	SHISA9--U91319.1	6	20	SHISA9	9974	chr16:13297406:+	U91319.1	21484	chr16:13352190:+	ONLY_REF_SPLICE	YES	49	0	0.35	1	0.0592	0.1973	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	SNU216_STOMACH	0.35	1	0.2565	FALSE	0	14	0	12	0	FALSE	ACH-000466
SNU216_STOMACH	YEATS2--VPS8	10	3	YEATS2	8870	chr3:183454617:+	VPS8	76769	chr3:184631307:+	ONLY_REF_SPLICE	YES	30	15	0.3	0.46	0.0987	0.0296	GTEx&tcga_normals:1/3694=0.03%,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+,VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+	SNU216_STOMACH	0.3	0.46	0.1283	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	CDC42SE2--LYRM7	9	4	CDC42SE2	6369	chr5:130651837:+	LYRM7	24588	chr5:130535224:+	ONLY_REF_SPLICE	YES	104	47	0.11	0.22	0.0888	0.0395	LOCAL_REARRANGEMENT:+:[40067],CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,LYRM7->LYR_motif_containing_7,chr5:130506503-130541119:+	SNU216_STOMACH	0.11	0.22	0.1283	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	MT-ND6--MT-TE	4	20	MT-ND6	1194	chrM:14480:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0.1973	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU216_STOMACH	1	1	0.2368	FALSE	499	1288	110	792	0	FALSE	ACH-000466
SNU216_STOMACH	CDC42SE2--LYRM7	8	3	CDC42SE2	5200	chr5:130599859:+	LYRM7	21362	chr5:130515788:+	ONLY_REF_SPLICE	YES	15	1	0.42	0.92	0.0789	0.0296	LOCAL_REARRANGEMENT:+:[40067],CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,LYRM7->LYR_motif_containing_7,chr5:130506503-130541119:+	SNU216_STOMACH	0.42	0.92	0.1085	TRUE	0	1	0	1	1	TRUE	ACH-000466
SNU216_STOMACH	ARL17A--IKZF3	7	6	ARL17A	3398	chr17:44648125:-	IKZF3	15999	chr17:37988404:-	ONLY_REF_SPLICE	YES	56	0	0.19	1	0.0691	0.0592	ARL17A->ADP_ribosylation_factor_like_GTPase_17A,chr17:44594068-44657088:-,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	SNU216_STOMACH	0.19	1	0.1283	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	MT-ND6--MT-TE	6	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0.0888	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU216_STOMACH	1	1	0.148	FALSE	499	1288	110	792	0	FALSE	ACH-000466
SNU216_STOMACH	MT-TA--MT-TC	6	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0.0592	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU216_STOMACH	1	1	0.1184	FALSE	462	80	0	856	0	FALSE	ACH-000466
SNU216_STOMACH	CTD-2337A12.1--CAST	6	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	285	1	0.02	0.0592	0.0099	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU216_STOMACH	0.02	1	0.0691	TRUE	347	1186	183	220	0	FALSE	ACH-000466
SNU216_STOMACH	C15orf57--CBX3	4	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	25	42	0.32	0.22	0.0395	0.0789	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU216_STOMACH	0.22	0.32	0.1184	TRUE	267	562	48	632	0	FALSE	ACH-000466
SNU216_STOMACH	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU216_STOMACH	1	1	0.0592	FALSE	462	80	0	856	0	FALSE	ACH-000466
SNU216_STOMACH	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0592	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU216_STOMACH	1	1	0.0592	FALSE	292	1546	117	613	0	FALSE	ACH-000466
SNU216_STOMACH	RP11-123O10.4--GRIP1	6	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0592	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU216_STOMACH	1	1	0.0592	FALSE	416	2512	207	587	0	FALSE	ACH-000466
SNU216_STOMACH	LRRC37A3--LASP1	4	7	LRRC37A3	10801	chr17:62885799:-	LASP1	34334	chr17:37071296:+	ONLY_REF_SPLICE	YES	17	663	0.39	0.02	0.0395	0.0691	LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3,LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+	SNU216_STOMACH	0.02	0.39	0.1086	TRUE	0	0	0	1	0	FALSE	ACH-000466
SNU216_STOMACH	PRR16--CTD-2334D19.1	5	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	72	0	0.1	1	0.0493	0.0296	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SNU216_STOMACH	0.1	1	0.0789	FALSE	56	216	12	147	0	FALSE	ACH-000466
SNU216_STOMACH	MT-ATP6--MT-CO1	4	5	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7690	19052	0	0	0.0395	0.0493	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU216_STOMACH	0	0	0.0888	FALSE	183	104	9	328	0	FALSE	ACH-000466
SNU216_STOMACH	RP11-96H19.1--RP11-446N19.1	4	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0395	0.0493	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU216_STOMACH	0.9	1	0.0888	FALSE	407	2205	196	549	0	FALSE	ACH-000466
SNU216_STOMACH	BCAS3--ITGB3	4	4	BCAS3	37888	chr17:59161925:+	ITGB3	60624	chr17:45351785:+	ONLY_REF_SPLICE	YES	20	0	0.29	1	0.0395	0.0395	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,ITGB3->chr17:45331212-45421658:+,chr17:45331263-45421658:+,integrin_subunit_beta_3	SNU216_STOMACH	0.29	1	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	LRRC37A3--LASP1	4	4	LRRC37A3	9729	chr17:62888647:-	LASP1	34334	chr17:37071296:+	ONLY_REF_SPLICE	YES	13	663	0.38	0.01	0.0395	0.0395	LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3,LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+	SNU216_STOMACH	0.01	0.38	0.079	FALSE	0	0	0	1	0	FALSE	ACH-000466
SNU216_STOMACH	MT-ATP6--MT-CO1	3	6	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2251	19349	0	0	0.0296	0.0592	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU216_STOMACH	0	0	0.0888	FALSE	183	104	9	328	0	FALSE	ACH-000466
SNU216_STOMACH	MT-ATP6--MT-CO1	3	6	MT-ATP6	1537	chrM:9063:+	MT-CO1	5319	chrM:6541:+	INCL_NON_REF_SPLICE	YES	3058	18613	0	0	0.0296	0.0592	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU216_STOMACH	0	0	0.0888	FALSE	183	104	9	328	0	FALSE	ACH-000466
SNU216_STOMACH	MT-ATP6--MT-CO1	3	5	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	6405	19164	0	0	0.0296	0.0493	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU216_STOMACH	0	0	0.0789	FALSE	183	104	9	328	0	FALSE	ACH-000466
SNU216_STOMACH	CDC42SE2--LYRM7	1	12	CDC42SE2	6369	chr5:130651837:+	LYRM7	22435	chr5:130517922:+	ONLY_REF_SPLICE	YES	104	20	0.11	0.39	0.0099	0.1184	LOCAL_REARRANGEMENT:+:[40067],CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,LYRM7->LYR_motif_containing_7,chr5:130506503-130541119:+	SNU216_STOMACH	0.11	0.39	0.1283	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU216_STOMACH	1	1	0.0395	FALSE	13	9	0	364	0	FALSE	ACH-000466
SNU216_STOMACH	LASP1--SRCIN1	4	0	LASP1	7268	chr17:37054772:+	SRCIN1	43990	chr17:36689666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0395	0	LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+,SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-	SNU216_STOMACH	1	1	0.0395	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	MT-ATP6--MT-CO1	3	4	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	6391	16551	0	0	0.0296	0.0395	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU216_STOMACH	0	0	0.0691	FALSE	183	104	9	328	0	FALSE	ACH-000466
SNU216_STOMACH	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU216_STOMACH	1	1	0.0395	TRUE	0	0	0	434	0	FALSE	ACH-000466
SNU216_STOMACH	MT-ATP6--MT-CO1	3	3	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	6377	18606	0	0	0.0296	0.0296	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU216_STOMACH	0	0	0.0592	FALSE	183	104	9	328	0	FALSE	ACH-000466
SNU216_STOMACH	RP11-96H19.1--RP11-446N19.1	2	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0197	0.0691	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU216_STOMACH	1	1	0.0888	FALSE	192	492	57	212	0	FALSE	ACH-000466
SNU216_STOMACH	SHISA9--U91319.1	3	3	SHISA9	7683	chr16:13010672:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	93	0	0.06	1	0.0296	0.0296	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	SNU216_STOMACH	0.06	1	0.0592	FALSE	2	8	0	8	0	FALSE	ACH-000466
SNU216_STOMACH	KLK5--MT-CO1	3	2	KLK5	3624	chr19:51452258:-	MT-CO1	8893	chrM:6326:+	INCL_NON_REF_SPLICE	YES	1464	17092	0	0	0.0296	0.0197	KLK5->Oncogene{Bushman},chr19:51446559-51456349:-,kallikrein_related_peptidase_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU216_STOMACH	0	0	0.0493	FALSE	0	0	0	1	0	FALSE	ACH-000466
SNU216_STOMACH	CDC42SE2--LYRM7	2	5	CDC42SE2	6369	chr5:130651837:+	LYRM7	23506	chr5:130522721:+	ONLY_REF_SPLICE	YES	104	57	0.06	0.11	0.0197	0.0493	LOCAL_REARRANGEMENT:+:[40067],CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,LYRM7->LYR_motif_containing_7,chr5:130506503-130541119:+	SNU216_STOMACH	0.06	0.11	0.069	TRUE	0	0	0	1	0	FALSE	ACH-000466
SNU216_STOMACH	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0197	0.0493	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU216_STOMACH	0.88	1	0.069	FALSE	275	511	55	178	0	FALSE	ACH-000466
SNU216_STOMACH	FTH1--ACTG1	3	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SNU216_STOMACH	1	1	0.0296	TRUE	0	0	0	64	0	FALSE	ACH-000466
SNU216_STOMACH	FTH1--ACTG1	3	0	FTH1	1226	chr11:61734907:-	ACTG1	10990	chr17:79479386:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SNU216_STOMACH	1	1	0.0296	TRUE	0	0	0	64	0	FALSE	ACH-000466
SNU216_STOMACH	FTH1--ACTG1	3	0	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SNU216_STOMACH	1	1	0.0296	TRUE	0	0	0	64	0	FALSE	ACH-000466
SNU216_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1564	chrM:9090:+	MT-CO1	5965	chrM:7187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU216_STOMACH	1	1	0.0296	FALSE	183	104	9	328	0	FALSE	ACH-000466
SNU216_STOMACH	DNAJC8--C2orf42	1	7	DNAJC8	9689	chr1:28530258:-	C2orf42	24798	chr2:70392767:-	ONLY_REF_SPLICE	YES	242	7	0.03	0.53	0.0099	0.0691	DNAJC8->DnaJ_heat_shock_protein_family_(Hsp40)_member_C8,chr1:28525967-28559536:-,C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42	SNU216_STOMACH	0.03	0.53	0.079	TRUE	0	0	0	1	0	FALSE	ACH-000466
SNU216_STOMACH	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0099	0.0691	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU216_STOMACH	1	1	0.079	FALSE	76	45	6	15	0	FALSE	ACH-000466
SNU216_STOMACH	ABCC1--FAM195A	2	2	ABCC1	16353	chr16:16165586:+	FAM195A	47146	chr16:698120:+	ONLY_REF_SPLICE	YES	63	141	0.06	0.03	0.0197	0.0197	{Klijn_CCL:Stomach=1},ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,FAM195A->chr16:691813-698474:+	SNU216_STOMACH	0.03	0.06	0.0394	TRUE	0	0	0	1	0	FALSE	ACH-000466
SNU216_STOMACH	YEATS2--VPS8	2	2	YEATS2	7758	chr3:183446639:+	VPS8	76769	chr3:184631307:+	ONLY_REF_SPLICE	NO	25	15	0.14	0.21	0.0197	0.0197	GTEx&tcga_normals:1/3694=0.03%,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+,VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+	SNU216_STOMACH	0.14	0.21	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	AC002066.1--AC073130.1	2	1	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0197	0.0099	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	SNU216_STOMACH	0.27	1	0.0296	FALSE	0	3	0	33	0	FALSE	ACH-000466
SNU216_STOMACH	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.2	1	0.0197	0.0099	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU216_STOMACH	0.2	1	0.0296	FALSE	164	806	69	479	0	FALSE	ACH-000466
SNU216_STOMACH	YWHAE--CRK	2	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1387	118	0	0.02	0.0197	0.0099	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SNU216_STOMACH	0	0.02	0.0296	FALSE	6	50	7	115	0	FALSE	ACH-000466
SNU216_STOMACH	EDF1--ASPSCR1	2	0	EDF1	3072	chr9:139757358:-	ASPSCR1	28606	chr17:79974352:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+	SNU216_STOMACH	1	1	0.0197	TRUE	0	1	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	IPO7--CTC-228N24.3	2	0	IPO7	13536	chr11:9446809:+	CTC-228N24.3	35858	chr5:127396936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	IPO7->chr11:9406169-9469673:+,importin_7,CTC-228N24.3->chr5:127276118-127418864:-	SNU216_STOMACH	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	MIR205HG--C9orf3	2	0	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SNU216_STOMACH	1	1	0.0197	TRUE	86	303	14	25	0	FALSE	ACH-000466
SNU216_STOMACH	NCOA3--GNAS	2	0	NCOA3	1163	chr20:46130763:+	GNAS	45368	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNU216_STOMACH	1	1	0.0197	TRUE	0	1	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU216_STOMACH	1	1	0.0197	FALSE	125	705	46	456	0	FALSE	ACH-000466
SNU216_STOMACH	PAFAH1B3--C19orf81	2	0	PAFAH1B3	3915	chr19:42804122:-	C19orf81	10952	chr19:51161246:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	PAFAH1B3->chr19:42801185-42807698:-,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_3,C19orf81->chr19:51152702-51162567:+,chromosome_19_open_reading_frame_81	SNU216_STOMACH	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000466
SNU216_STOMACH	RCC1--EEF1D	2	0	RCC1	2920	chr1:28835417:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SNU216_STOMACH	1	1	0.0197	TRUE	1	10	0	18	0	TRUE	ACH-000466
SNU216_STOMACH	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SNU216_STOMACH	1	1	0.0197	TRUE	1	10	0	18	0	TRUE	ACH-000466
SNU216_STOMACH	SHISA9--U91319.1	2	0	SHISA9	9974	chr16:13297406:+	U91319.1	24024	chr16:13568067:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	SNU216_STOMACH	1	1	0.0197	FALSE	1	17	0	8	0	FALSE	ACH-000466
SNU216_STOMACH	ABCC1--FAM195A	1	3	ABCC1	16353	chr16:16165586:+	FAM195A	46809	chr16:697783:+	ONLY_REF_SPLICE	YES	63	105	0.06	0.04	0.0099	0.0296	{Klijn_CCL:Stomach=1},ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,FAM195A->chr16:691813-698474:+	SNU216_STOMACH	0.04	0.06	0.0395	TRUE	0	0	0	1	0	FALSE	ACH-000466
SNU216_STOMACH	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	NO	0	42	1	0.07	0.0099	0.0197	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU216_STOMACH	0.07	1	0.0296	TRUE	465	1949	224	605	0	FALSE	ACH-000466
SNU216_STOMACH	AC002066.1--AC073130.1	1	1	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	NO	8	0	0.2	1	0.0099	0.0099	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	SNU216_STOMACH	0.2	1	0.0198	FALSE	0	1	1	30	0	FALSE	ACH-000466
SNU216_STOMACH	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	7488	chr5:95966789:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	285	1	0.01	0.0099	0.0099	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU216_STOMACH	0.01	1	0.0198	FALSE	18	50	10	12	0	FALSE	ACH-000466
SNU216_STOMACH	HLTF--IPO9	1	1	HLTF	9289	chr3:148786027:-	IPO9	39686	chr1:201823951:+	ONLY_REF_SPLICE	YES	60	131	0.03	0.02	0.0099	0.0099	HLTF->Oncogene{Bushman},chr3:148747914-148804341:-,helicase-like_transcription_factor,IPO9->chr1:201798269-201853422:+,importin_9	SNU216_STOMACH	0.02	0.03	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000466
2313287_STOMACH	MT-ND6--MT-TE	73	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9895	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	2313287_STOMACH	1	1	0.9895	FALSE	499	1288	110	792	0	FALSE	ACH-000948
2313287_STOMACH	TIMM23B--LINC00843	57	53	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7726	0.7184	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	2313287_STOMACH	0.99	1	1.491	TRUE	508	994	45	981	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND6--MT-TE	53	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7184	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	2313287_STOMACH	1	1	0.7184	FALSE	499	1288	110	792	0	FALSE	ACH-000948
2313287_STOMACH	TIMM23--RP11-464F9.1	29	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	262	3	0.11	0.92	0.3931	0.0678	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	2313287_STOMACH	0.11	0.92	0.4609	TRUE	519	3926	326	965	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND6--MT-TE	22	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2982	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	2313287_STOMACH	1	1	0.2982	FALSE	499	1288	110	792	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND6--MT-TE	16	1	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.2169	0.0136	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	2313287_STOMACH	0.89	1	0.2305	FALSE	499	1288	110	792	0	FALSE	ACH-000948
2313287_STOMACH	ZNF654--HMGB2	15	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2033	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	2313287_STOMACH	1	1	0.2033	TRUE	0	0	0	518	0	FALSE	ACH-000948
2313287_STOMACH	OR51S1--TP53I11	14	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1898	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	2313287_STOMACH	1	1	0.1898	TRUE	402	216	10	229	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND4--MT-ND4L	11	1	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	96	1	0.11	0.92	0.1491	0.0136	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	2313287_STOMACH	0.11	0.92	0.1627	FALSE	344	827	44	306	0	FALSE	ACH-000948
2313287_STOMACH	EXOC4--LRGUK	6	13	EXOC4	30802	chr7:133622822:+	LRGUK	54481	chr7:133868486:+	ONLY_REF_SPLICE	YES	67	2	0.22	0.9	0.0813	0.1762	{Klijn_CCL:Stomach=1},NEIGHBORS[60710],EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,LRGUK->Oncogene{Bushman},chr7:133812052-133949343:+,leucine-rich_repeats_and_guanylate_kinase_domain_containing	2313287_STOMACH	0.22	0.9	0.2575	FALSE	0	0	0	1	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND4--MT-ND4L	6	5	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1303	1	0.01	0.92	0.0813	0.0678	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	2313287_STOMACH	0.01	0.92	0.1491	FALSE	344	827	44	306	0	FALSE	ACH-000948
2313287_STOMACH	PLXDC1--TAF13	7	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0949	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	2313287_STOMACH	1	1	0.0949	TRUE	7	10	0	216	0	FALSE	ACH-000948
2313287_STOMACH	C15orf57--CBX3	5	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	53	9	0.17	0.55	0.0678	0.0813	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	2313287_STOMACH	0.17	0.55	0.1491	TRUE	267	562	48	632	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND4--MT-ND4L	4	8	MT-ND4	1314	chrM:11073:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	115	1	0.09	0.92	0.0542	0.1084	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	2313287_STOMACH	0.09	0.92	0.1626	FALSE	344	827	44	306	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND6--MT-TE	6	0	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0813	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	2313287_STOMACH	1	1	0.0813	FALSE	499	1288	110	792	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND4--MT-ND4L	4	5	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	18193	1	0	0.9	0.0542	0.0678	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	2313287_STOMACH	0	0.9	0.122	FALSE	328	800	43	304	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND4--MT-ND4L	3	9	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	106	1	0.1	0.92	0.0407	0.122	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	2313287_STOMACH	0.1	0.92	0.1627	FALSE	344	827	44	306	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND4--MT-ND4L	3	8	MT-ND4	1199	chrM:10958:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	39	1	0.22	0.92	0.0407	0.1084	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	2313287_STOMACH	0.22	0.92	0.1491	FALSE	344	826	44	306	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND6--MT-TE	5	0	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0678	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	2313287_STOMACH	1	1	0.0678	FALSE	499	1288	110	792	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND4--MT-ND4L	4	1	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	38	1	0.12	0.83	0.0542	0.0136	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	2313287_STOMACH	0.12	0.83	0.0678	FALSE	344	826	44	306	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND6--MT-TE	4	1	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0542	0.0136	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	2313287_STOMACH	0.62	1	0.0678	FALSE	499	1288	110	792	0	FALSE	ACH-000948
2313287_STOMACH	C15orf57--CBX3	3	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	49	9	0.12	0.44	0.0407	0.0542	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	2313287_STOMACH	0.12	0.44	0.0949	TRUE	267	562	48	632	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND4--MT-ND4L	3	4	MT-ND4	1144	chrM:10903:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	17	1	0.29	0.88	0.0407	0.0542	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	2313287_STOMACH	0.29	0.88	0.0949	FALSE	344	826	44	306	0	FALSE	ACH-000948
2313287_STOMACH	NPM1P24--SET	4	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	2313287_STOMACH	1	1	0.0542	TRUE	0	0	0	434	0	FALSE	ACH-000948
2313287_STOMACH	MUC5B--MT-ATP6	3	1	MUC5B	24036	chr11:1269524:+	MT-ATP6	40906	chrM:8625:+	INCL_NON_REF_SPLICE	YES	1093	22	0	0.15	0.0407	0.0136	MUC5B->chr11:1244296-1283406:+,mucin_5B,_oligomeric_mucus/gel-forming,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	2313287_STOMACH	0	0.15	0.0543	FALSE	0	0	0	2	0	FALSE	ACH-000948
2313287_STOMACH	MUC5B--MT-ATP6	3	1	MUC5B	26220	chr11:1271708:+	MT-ATP6	40906	chrM:8625:+	INCL_NON_REF_SPLICE	YES	1444	22	0	0.15	0.0407	0.0136	MUC5B->chr11:1244296-1283406:+,mucin_5B,_oligomeric_mucus/gel-forming,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	2313287_STOMACH	0	0.15	0.0543	FALSE	0	0	0	2	0	FALSE	ACH-000948
2313287_STOMACH	MUC5B--MT-ATP6	3	1	MUC5B	37133	chr11:1282732:+	MT-ATP6	41208	chrM:8927:+	INCL_NON_REF_SPLICE	YES	2340	16488	0	0	0.0407	0.0136	MUC5B->chr11:1244296-1283406:+,mucin_5B,_oligomeric_mucus/gel-forming,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	2313287_STOMACH	0	0	0.0543	FALSE	2	0	0	6	0	FALSE	ACH-000948
2313287_STOMACH	BRI3BP--UBC	3	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	2313287_STOMACH	1	1	0.0407	TRUE	5	99	5	34	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4584	chrM:14684:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	2313287_STOMACH	1	1	0.0407	FALSE	499	1288	110	792	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	2313287_STOMACH	1	1	0.0407	FALSE	499	1288	110	792	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	2313287_STOMACH	1	1	0.0407	FALSE	499	1288	110	792	0	FALSE	ACH-000948
2313287_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	2313287_STOMACH	1	1	0.0407	FALSE	499	1288	110	792	0	FALSE	ACH-000948
2313287_STOMACH	MUC5B--MT-ATP6	3	0	MUC5B	20265	chr11:1265753:+	MT-ATP6	40906	chrM:8625:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	MUC5B->chr11:1244296-1283406:+,mucin_5B,_oligomeric_mucus/gel-forming,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	2313287_STOMACH	1	1	0.0407	FALSE	0	0	0	2	0	FALSE	ACH-000948
2313287_STOMACH	ABI1--WAC	2	0	ABI1	1341	chr10:27149676:-	WAC	25505	chr10:28872328:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,WAC->WW_domain_containing_adaptor_with_coiled-coil,chr10:28821422-28912041:+	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	AC003665.1--SP2	2	0	AC003665.1	2195	chr17:45995818:-	SP2	10389	chr17:45992678:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	NEIGHBORS_OVERLAP:-:+:[31627],AC003665.1->chr17:45974696-46018776:-,SP2->Sp2_transcription_factor,chr17:45973516-46006323:+	2313287_STOMACH	1	1	0.0271	FALSE	0	0	0	1	0	FALSE	ACH-000948
2313287_STOMACH	C17orf76-AS1--PHF14	2	0	C17orf76-AS1	1593	chr17:16342728:+	PHF14	37718	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	C17orf76-AS1->chr17:16342136-16381992:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	5	0	TRUE	ACH-000948
2313287_STOMACH	DBR1--TBC1D15	2	0	DBR1	3529	chr3:137890475:-	TBC1D15	31460	chr12:72307606:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	DBR1->chr3:137879854-137893791:-,debranching_RNA_lariats_1,TBC1D15->TBC1_domain_family_member_15,chr12:72233487-72320629:+	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	DNAJC24--RCC1	2	0	DNAJC24	2020	chr11:31392406:+	RCC1	22508	chr1:28834640:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	FAM222B--SMYD4	2	0	FAM222B	2441	chr17:27169700:-	SMYD4	24694	chr17:1704318:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	GAK--CIRBP	2	0	GAK	8218	chr4:891821:-	CIRBP	48916	chr19:1270927:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase,CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	ILF3--DDX42	2	0	ILF3	10372	chr19:10792005:+	DDX42	27037	chr17:61864394:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,DDX42->DEAD-box_helicase_42,chr17:61850963-61896677:+	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	MSI2--RP11-159D12.2	2	0	MSI2	5660	chr17:55339553:+	RP11-159D12.2	54335	chr17:56067157:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,RP11-159D12.2->chr17:56066400-56072211:-	2313287_STOMACH	1	1	0.0271	TRUE	0	1	0	1	0	TRUE	ACH-000948
2313287_STOMACH	MYO1D--CHD1L	2	0	MYO1D	31205	chr17:30932105:-	CHD1L	44488	chr1:146727468:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	MYO1D->chr17:30819540-31204195:-,myosin_ID,CHD1L->chr1:146714291-146767443:+,chromodomain_helicase_DNA_binding_protein_1-like	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	NDUFV2--MYL12B	2	0	NDUFV2	1168	chr18:9102795:+	MYL12B	16096	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	OGT--DTL	2	0	OGT	1254	chrX:70753186:+	DTL	32738	chr1:212236226:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	OGT->O-linked_N-acetylglucosamine_(GlcNAc)_transferase,chrX:70752933-70795747:+,DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	PEX14--MRPS5	2	0	PEX14	3457	chr1:10555378:+	MRPS5	33437	chr2:95756267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14,MRPS5->chr2:95752952-95815179:-,mitochondrial_ribosomal_protein_S5	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	PRDX3--CCT2	2	0	PRDX3	5352	chr10:120931894:-	CCT2	16790	chr12:69983265:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3,CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	RP11-120D5.1--MID1	2	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	2313287_STOMACH	1	1	0.0271	FALSE	0	48	1	163	0	FALSE	ACH-000948
2313287_STOMACH	SCAF8--ANXA2	2	0	SCAF8	1606	chr6:155055064:+	ANXA2	43507	chr15:60674640:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	SCAF8->SR-related_CTD_associated_factor_8,chr6:155054459-155155192:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	SNHG1--DNAJC1	2	0	SNHG1	1491	chr11:62622896:-	DNAJC1	18838	chr10:22055238:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	SNHG1->chr11:62619460-62623386:-,small_nucleolar_RNA_host_gene_1,DNAJC1->DnaJ_heat_shock_protein_family_(Hsp40)_member_C1,chr10:22045466-22292698:-	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	SNHG5--ZNF202	2	0	SNHG5	1939	chr6:86387513:-	ZNF202	14407	chr11:123600533:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,ZNF202->chr11:123594885-123612383:-,zinc_finger_protein_202	2313287_STOMACH	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000948
2313287_STOMACH	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	24014	chr7:872142:+	ONLY_REF_SPLICE	YES	212	6	0.01	0.25	0.0136	0.0136	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	2313287_STOMACH	0.01	0.25	0.0272	FALSE	0	1	0	6	0	FALSE	ACH-000948
2313287_STOMACH	ANXA1--RBM39	1	1	ANXA1	5083	chr9:75774339:+	RBM39	20574	chr20:34326939:-	ONLY_REF_SPLICE	YES	4418	1074	0	0	0.0136	0.0136	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	2313287_STOMACH	0	0	0.0272	FALSE	1	0	1	2	0	FALSE	ACH-000948
2313287_STOMACH	OCIAD2--OCIAD1	1	1	OCIAD2	2431	chr4:48906501:-	OCIAD1	15918	chr4:48835418:+	ONLY_REF_SPLICE	YES	1583	772	0	0	0.0136	0.0136	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},PROTCLUST,LOCAL_INVERSION:-:+:[23202],OCIAD2->OCIA_domain_containing_2,chr4:48887036-48908954:-,OCIAD1->OCIA_domain_containing_1,chr4:48807229-48863834:+	2313287_STOMACH	0	0	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000948
2313287_STOMACH	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0136	0.0136	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	2313287_STOMACH	0.67	1	0.0272	FALSE	81	155	12	160	0	FALSE	ACH-000948
2313287_STOMACH	TP53I11--AP1G2	1	1	TP53I11	9128	chr11:44958855:-	AP1G2	24791	chr14:24033869:-	ONLY_REF_SPLICE	YES	382	166	0.01	0.01	0.0136	0.0136	TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11,AP1G2->adaptor_related_protein_complex_1_gamma_2_subunit,chr14:24028774-24037279:-	2313287_STOMACH	0.01	0.01	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000948
CHAGOK1_LUNG	RPS19--POU2F2	425	0	RPS19	1372	chr19:42364359:+	POU2F2	17092	chr19:42626728:-	ONLY_REF_SPLICE	YES	0	0	1	1	3.5945	0	RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19,POU2F2->Oncogene{Bushman},POU_class_2_homeobox_2,chr19:42590263-42700737:-	CHAGOK1_LUNG	1	1	3.5945	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	COPS2--CLDN1	315	6	COPS2	1137	chr15:49447722:-	CLDN1	20862	chr3:190030825:-	ONLY_REF_SPLICE	YES	1	134	1	0.71	2.6642	0.0507	COPS2->COP9_signalosome_subunit_2,Oncogene{Bushman},chr15:49398268-49447858:-,CLDN1->chr3:190023490-190040264:-,claudin_1	CHAGOK1_LUNG	0.71	1	2.7149	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	PRKCI--RPL22	155	92	PRKCI	4669	chr3:169981217:+	RPL22	31682	chr1:6257733:-	INCL_NON_REF_SPLICE	YES	89	695	0.74	0.26	1.3109	0.7781	PRKCI->ArcherDX_panel,FoundationOne_panel,chr3:169940153-170023769:+,protein_kinase_C_iota,RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22	CHAGOK1_LUNG	0.26	0.74	2.089	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	TTLL7--ERI3	157	49	TTLL7	1220	chr1:84464614:-	ERI3	53671	chr1:44687312:-	ONLY_REF_SPLICE	YES	6	112	0.97	0.65	1.3279	0.4144	TTLL7->chr1:84330711-84464833:-,tubulin_tyrosine_ligase_like_7,ERI3->ERI1_exoribonuclease_family_member_3,chr1:44686742-44820932:-	CHAGOK1_LUNG	0.65	0.97	1.7423	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TN	169	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4294	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CHAGOK1_LUNG	1	1	1.4294	FALSE	369	2501	205	193	0	FALSE	ACH-000867
CHAGOK1_LUNG	MIER1--RP11-417J8.1	143	85	MIER1	8048	chr1:67411978:+	RP11-417J8.1	28631	chr1:142557333:+	ONLY_REF_SPLICE	YES	35	0	0.87	1	1.2095	0.7189	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,RP11-417J8.1->chr1:142553293-142559170:+	CHAGOK1_LUNG	0.87	1	1.9284	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	SKIL--MECOM	119	50	SKIL	4752	chr3:170079217:+	MECOM	27790	chr3:168861620:-	ONLY_REF_SPLICE	YES	55	8	0.75	0.95	1.0065	0.4229	{Klijn_CCL:Lung=1},SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+,MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-	CHAGOK1_LUNG	0.75	0.95	1.4294	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	RP11-488P3.1--GLMN	116	30	RP11-488P3.1	1248	chr1:94240753:-	GLMN	9256	chr1:92757094:-	ONLY_REF_SPLICE	YES	9	20	0.94	0.88	0.9811	0.2537	RP11-488P3.1->chr1:94218480-94241000:-,GLMN->Oncogene{Bushman},chr1:92711959-92764544:-,glomulin,_FKBP_associated_protein	CHAGOK1_LUNG	0.88	0.94	1.2348	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	CCPG1--SHC4	107	5	CCPG1	1290	chr15:55700419:-	SHC4	28044	chr15:49183008:-	ONLY_REF_SPLICE	YES	19	0	0.85	1	0.905	0.0423	CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	CHAGOK1_LUNG	0.85	1	0.9473	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	TIMM23B--LINC00843	99	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8373	0.1607	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CHAGOK1_LUNG	0.99	1	0.998	TRUE	508	994	45	981	0	FALSE	ACH-000867
CHAGOK1_LUNG	TCF12--RP11-548M13.1	79	39	TCF12	3439	chr15:57213296:+	RP11-548M13.1	45270	chr15:55384055:+	ONLY_REF_SPLICE	YES	36	0	0.77	1	0.6682	0.3299	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,RP11-548M13.1->chr15:55348945-55384371:+	CHAGOK1_LUNG	0.77	1	0.9981	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MIER1--RP11-417J8.1	60	101	MIER1	8048	chr1:67411978:+	RP11-417J8.1	27427	chr1:142553293:+	ONLY_REF_SPLICE	YES	35	0	0.82	1	0.5075	0.8542	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,RP11-417J8.1->chr1:142553293-142559170:+	CHAGOK1_LUNG	0.82	1	1.3617	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TC	75	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6343	0.0761	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CHAGOK1_LUNG	1	1	0.7104	FALSE	462	80	0	856	0	FALSE	ACH-000867
CHAGOK1_LUNG	APTX--NOL6	63	34	APTX	11552	chr9:32984629:-	NOL6	27080	chr9:33464974:-	ONLY_REF_SPLICE	YES	27	27	0.78	0.78	0.5328	0.2876	{Klijn_CCL:Lung=1},APTX->aprataxin,chr9:32972604-33025166:-,NOL6->chr9:33461439-33473928:-,nucleolar_protein_6	CHAGOK1_LUNG	0.78	0.78	0.8204	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	BRWD3--HMGN5	69	10	BRWD3	20519	chrX:79971656:-	HMGN5	54215	chrX:80375316:-	ONLY_REF_SPLICE	YES	5	20	0.94	0.8	0.5836	0.0846	{Klijn_CCL:Lung=1},BRWD3->Oncogene{Bushman},bromodomain_and_WD_repeat_domain_containing_3,chrX:79926353-80065187:-,HMGN5->chrX:80369200-80457441:-,high_mobility_group_nucleosome_binding_domain_5	CHAGOK1_LUNG	0.8	0.94	0.6682	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	4	259	MT-ND4	2033	chrM:11792:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	14169	0	0.02	1	0.0338	2.1906	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.02	1	2.2244	FALSE	344	826	44	305	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	6	245	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	34	0	0.88	1	0.0507	2.0721	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.88	1	2.1228	FALSE	344	826	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	6	241	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	25	1	0.91	1	0.0507	2.0383	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.91	1	2.089	FALSE	344	826	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MIER1--RP11-417J8.1	40	101	MIER1	8048	chr1:67411978:+	RP11-417J8.1	27390	chr1:142553256:+	INCL_NON_REF_SPLICE	YES	35	0	0.8	1	0.3383	0.8542	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,RP11-417J8.1->chr1:142553293-142559170:+	CHAGOK1_LUNG	0.8	1	1.1925	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	3	243	MT-ND4	1220	chrM:10979:+	MT-ND4L	5536	chrM:10627:+	INCL_NON_REF_SPLICE	YES	33	4	0.88	0.98	0.0254	2.0552	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.88	0.98	2.0806	FALSE	344	827	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	TIMM23--RP11-464F9.1	63	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5328	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CHAGOK1_LUNG	1	1	0.5328	TRUE	519	3926	326	965	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	4	234	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	14	1	0.94	1	0.0338	1.9791	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.94	1	2.0129	FALSE	344	826	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	4	232	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	13	4	0.95	0.98	0.0338	1.9622	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.95	0.98	1.996	FALSE	344	826	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	NEDD4--CLDN1	57	0	NEDD4	1236	chr15:56285709:-	CLDN1	41475	chr3:190030825:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4821	0	NEDD4->chr15:56119120-56285944:-,neural_precursor_cell_expressed,_developmentally_down-regulated_4,_E3_ubiquitin_protein_ligase,CLDN1->chr3:190023490-190040264:-,claudin_1	CHAGOK1_LUNG	1	1	0.4821	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	11	180	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	8	6	0.96	0.97	0.093	1.5224	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.96	0.97	1.6154	FALSE	344	821	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	4	199	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	9	4	0.96	0.98	0.0338	1.6831	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.96	0.98	1.7169	FALSE	344	826	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND6--MT-TE	48	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.406	0.0507	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHAGOK1_LUNG	1	1	0.4567	FALSE	499	1288	110	792	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TN	49	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4144	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CHAGOK1_LUNG	1	1	0.4144	FALSE	369	2501	205	193	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	3	182	MT-ND4	1789	chrM:11548:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	5750	3	0.03	0.98	0.0254	1.5393	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.03	0.98	1.5647	FALSE	344	827	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	ZNF654--HMGB2	48	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.406	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CHAGOK1_LUNG	1	1	0.406	TRUE	0	0	0	518	0	FALSE	ACH-000867
CHAGOK1_LUNG	RP11-344E13.3--UBBP4	33	43	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	182	0	0.29	1	0.2791	0.3637	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	CHAGOK1_LUNG	0.29	1	0.6428	TRUE	23	13	0	54	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TN	18	98	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1522	0.8289	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CHAGOK1_LUNG	1	1	0.9811	FALSE	369	2501	205	193	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	3	154	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	15	3	0.91	0.98	0.0254	1.3025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.91	0.98	1.3279	FALSE	344	826	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MIER1--RP11-417J8.1	23	63	MIER1	8048	chr1:67411978:+	RP11-417J8.1	29669	chr1:142558448:+	ONLY_REF_SPLICE	YES	35	8	0.71	0.91	0.1945	0.5328	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,RP11-417J8.1->chr1:142553293-142559170:+	CHAGOK1_LUNG	0.71	0.91	0.7273	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	PRKACB--HIVEP3	36	3	PRKACB	1310	chr1:84544054:+	HIVEP3	32163	chr1:42314760:-	ONLY_REF_SPLICE	YES	17	0	0.7	1	0.3045	0.0254	PRKACB->chr1:84543745-84704181:+,protein_kinase_cAMP-activated_catalytic_subunit_beta,HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3	CHAGOK1_LUNG	0.7	1	0.3299	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MIER1--RP11-417J8.1	8	104	MIER1	8915	chr1:67412845:+	RP11-417J8.1	27427	chr1:142553293:+	INCL_NON_REF_SPLICE	YES	29	0	0.79	1	0.0677	0.8796	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,RP11-417J8.1->chr1:142553293-142559170:+	CHAGOK1_LUNG	0.79	1	0.9473	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	21	51	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	12781	0	0.01	1	0.1776	0.4313	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.01	1	0.6089	FALSE	328	800	43	304	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TN	21	51	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1776	0.4313	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CHAGOK1_LUNG	1	1	0.6089	FALSE	369	2501	205	193	0	FALSE	ACH-000867
CHAGOK1_LUNG	RP11-532F12.5--INO80	32	7	RP11-532F12.5	5142	chr15:41128316:-	INO80	41060	chr15:41279391:-	INCL_NON_REF_SPLICE	YES	7	39	0.85	0.5	0.2706	0.0592	RP11-532F12.5->chr15:41128006-41136585:-,INO80->INO80_complex_subunit,chr15:41271078-41408552:-	CHAGOK1_LUNG	0.5	0.85	0.3298	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	4	116	MT-ND4	1144	chrM:10903:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	22	2	0.85	0.98	0.0338	0.9811	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.85	0.98	1.0149	FALSE	344	826	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MIER1--RP11-417J8.1	11	87	MIER1	8915	chr1:67412845:+	RP11-417J8.1	28631	chr1:142557333:+	INCL_NON_REF_SPLICE	YES	29	0	0.77	1	0.093	0.7358	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,RP11-417J8.1->chr1:142553293-142559170:+	CHAGOK1_LUNG	0.77	1	0.8288	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	3	118	MT-ND4	1756	chrM:11515:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	4407	2	0.03	0.98	0.0254	0.998	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.03	0.98	1.0234	FALSE	344	827	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TC	29	11	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2453	0.093	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CHAGOK1_LUNG	1	1	0.3383	FALSE	462	80	0	856	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TN	25	24	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2114	0.203	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CHAGOK1_LUNG	1	1	0.4144	FALSE	369	2501	205	193	0	FALSE	ACH-000867
CHAGOK1_LUNG	PAWR--RP1-78O14.1	28	8	PAWR	15902	chr12:79986391:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	99	0	0.27	1	0.2368	0.0677	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	CHAGOK1_LUNG	0.27	1	0.3045	FALSE	3	4	0	12	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	16	51	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	507	0	0.12	1	0.1353	0.4313	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.12	1	0.5666	FALSE	344	827	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND6--MT-TE	27	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2284	0.0592	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHAGOK1_LUNG	1	1	0.2876	FALSE	499	1288	110	792	0	FALSE	ACH-000867
CHAGOK1_LUNG	RP11-403B2.7--RP11-403B2.6	23	13	RP11-403B2.7	1254	chr15:20961259:-	RP11-403B2.6	7754	chr15:20965236:-	ONLY_REF_SPLICE	YES	6	0	0.86	1	0.1945	0.11	GTEx_FI:{Brain=[count:17=pct:2.6],Esophagus=[count:15=pct:3.7],Blood_Vessel=[count:8=pct:2.2],Skin=[count:7=pct:2.2],Thyroid=[count:5=pct:2.8],Prostate=[count:4=pct:6.6],Lung=[count:4=pct:2.4],Heart=[count:3=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Blood=[count:2=pct:1.1],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},LOCAL_REARRANGEMENT:-:[3128],RP11-403B2.7->chr15:20935076-20961512:-,RP11-403B2.6->chr15:20964640-20980123:-	CHAGOK1_LUNG	0.86	1	0.3045	TRUE	22	66	5	11	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	17	36	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	294	0	0.15	1	0.1438	0.3045	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.15	1	0.4483	FALSE	344	827	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TN	8	71	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0677	0.6005	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CHAGOK1_LUNG	1	1	0.6682	FALSE	369	2501	205	193	0	FALSE	ACH-000867
CHAGOK1_LUNG	HMGXB4--RP11-513G11.2	25	0	HMGXB4	1106	chr22:35653550:+	RP11-513G11.2	18435	chr3:193994709:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2114	0	HMGXB4->HMG-box_containing_4,chr22:35653445-35691800:+,RP11-513G11.2->chr3:193994471-194005157:+	CHAGOK1_LUNG	1	1	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-CO2--MT-CO1	23	6	MT-CO2	1249	chrM:7834:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	128	23009	0.18	0	0.1945	0.0507	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CHAGOK1_LUNG	0	0.18	0.2452	FALSE	36	10	0	27	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND6--MT-TE	21	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.1776	0.1015	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHAGOK1_LUNG	0.92	1	0.2791	FALSE	499	1288	110	792	0	FALSE	ACH-000867
CHAGOK1_LUNG	PRR16--CTD-2334D19.1	22	8	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	37	1	0.45	0.97	0.1861	0.0677	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CHAGOK1_LUNG	0.45	0.97	0.2538	FALSE	21	45	1	60	0	FALSE	ACH-000867
CHAGOK1_LUNG	HSP90AB1--MT-RNR2	22	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2066	0	0.01	1	0.1861	0.0085	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHAGOK1_LUNG	0.01	1	0.1946	FALSE	13	9	0	364	0	FALSE	ACH-000867
CHAGOK1_LUNG	PDSS1--FAM188A	22	1	PDSS1	11794	chr10:27031506:+	FAM188A	17576	chr10:15889942:-	ONLY_REF_SPLICE	YES	18	26	0.56	0.47	0.1861	0.0085	PDSS1->chr10:26986588-27035727:+,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_1,FAM188A->chr10:15820169-15902519:-,family_with_sequence_similarity_188_member_A	CHAGOK1_LUNG	0.47	0.56	0.1946	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	PIGB--DNAJC13	21	5	PIGB	1454	chr15:55611611:+	DNAJC13	21000	chr3:132153382:+	ONLY_REF_SPLICE	YES	31	9	0.46	0.74	0.1776	0.0423	PIGB->chr15:55611158-55647846:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_B,DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+	CHAGOK1_LUNG	0.46	0.74	0.2199	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	RP11-680G10.1--GSE1	22	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	129	1	0.15	0.1861	0.0085	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CHAGOK1_LUNG	0.15	1	0.1946	TRUE	465	1949	224	605	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-CO2--MT-CO1	15	28	MT-CO2	1345	chrM:7930:+	MT-CO1	4982	chrM:6201:+	INCL_NON_REF_SPLICE	YES	177	19974	0.2	0	0.1269	0.2368	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CHAGOK1_LUNG	0	0.2	0.3637	FALSE	36	10	0	27	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TN	7	59	MT-TA	1054	chrM:5602:-	MT-TN	4092	chrM:5707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0.499	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CHAGOK1_LUNG	1	1	0.5582	FALSE	369	2501	205	193	0	FALSE	ACH-000867
CHAGOK1_LUNG	DNAJC13--TLN2	20	2	DNAJC13	1235	chr3:132136604:+	TLN2	63039	chr15:62881886:+	ONLY_REF_SPLICE	YES	4	0	0.85	1	0.1692	0.0169	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,TLN2->chr15:62682725-63136830:+,talin_2	CHAGOK1_LUNG	0.85	1	0.1861	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	10	40	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	6	3	0.89	0.94	0.0846	0.3383	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.89	0.94	0.4229	FALSE	344	821	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TN	10	40	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0846	0.3383	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CHAGOK1_LUNG	1	1	0.4229	FALSE	369	2501	205	193	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	3	65	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	1	1	0.99	0.99	0.0254	0.5498	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.99	0.99	0.5752	FALSE	344	821	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	3	63	MT-ND4	1125	chrM:10884:+	MT-ND4L	5651	chrM:10742:+	INCL_NON_REF_SPLICE	YES	19	2	0.78	0.97	0.0254	0.5328	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.78	0.97	0.5582	FALSE	344	826	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TN	5	55	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0.4652	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CHAGOK1_LUNG	1	1	0.5075	FALSE	369	2501	205	193	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TC	18	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1522	0.0085	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CHAGOK1_LUNG	1	1	0.1607	FALSE	462	80	0	856	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	10	32	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	32	0	0.57	1	0.0846	0.2706	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.57	1	0.3552	FALSE	344	826	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	SKIL--MECOM	5	52	SKIL	4752	chr3:170079217:+	MECOM	22778	chr3:168867543:-	ONLY_REF_SPLICE	YES	55	8	0.51	0.88	0.0423	0.4398	{Klijn_CCL:Lung=1},SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+,MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-	CHAGOK1_LUNG	0.51	0.88	0.4821	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-CO2--MT-CO1	5	49	MT-CO2	1540	chrM:8125:+	MT-CO1	4713	chrM:5932:+	INCL_NON_REF_SPLICE	NO	2	0	0.96	1	0.0423	0.4144	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CHAGOK1_LUNG	0.96	1	0.4567	FALSE	33	9	0	27	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	8	36	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	36	0	0.55	1	0.0677	0.3045	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.55	1	0.3722	FALSE	344	826	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	PYGO1--MAPK6	16	4	PYGO1	2113	chr15:55880033:-	MAPK6	27553	chr15:52350830:+	ONLY_REF_SPLICE	YES	1	38	0.95	0.34	0.1353	0.0338	{Klijn_CCL:Lung=1},PYGO1->chr15:55831088-55881145:-,pygopus_family_PHD_finger_1,MAPK6->Oncogene{Bushman},chr15:52244303-52358462:+,mitogen-activated_protein_kinase_6	CHAGOK1_LUNG	0.34	0.95	0.1691	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	4	51	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	31	0	0.64	1	0.0338	0.4313	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.64	1	0.4651	FALSE	344	826	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	4	51	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	33	0	0.62	1	0.0338	0.4313	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.62	1	0.4651	FALSE	344	826	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	UFD1L--TXNRD2	16	0	UFD1L	1133	chr22:19466606:-	TXNRD2	24348	chr22:19907122:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1353	0	UFD1L->chr22:19437433-19466738:-,ubiquitin_fusion_degradation_1_like_(yeast),TXNRD2->chr22:19863040-19929341:-,thioredoxin_reductase_2	CHAGOK1_LUNG	1	1	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	3	51	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	9031	0	0.01	1	0.0254	0.4313	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.01	1	0.4567	FALSE	344	827	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	3	51	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	5113	0	0.01	1	0.0254	0.4313	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.01	1	0.4567	FALSE	344	827	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TN	15	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1269	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CHAGOK1_LUNG	1	1	0.1269	FALSE	369	2501	205	193	0	FALSE	ACH-000867
CHAGOK1_LUNG	KDM5B--MIER1	14	3	KDM5B	2369	chr1:202777230:-	MIER1	57021	chr1:67450255:+	ONLY_REF_SPLICE	YES	37	15	0.31	0.53	0.1184	0.0254	KDM5B->chr1:202696526-202778598:-,lysine_demethylase_5B,MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+	CHAGOK1_LUNG	0.31	0.53	0.1438	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TN	3	45	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0.3806	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CHAGOK1_LUNG	1	1	0.406	FALSE	369	2501	205	193	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TN	14	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1184	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CHAGOK1_LUNG	1	1	0.1184	FALSE	369	2501	205	193	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND6--MT-TE	8	22	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0677	0.1861	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHAGOK1_LUNG	1	1	0.2538	FALSE	499	1288	110	792	0	FALSE	ACH-000867
CHAGOK1_LUNG	HERC1--FSIP1	9	16	HERC1	1116	chr15:64126026:-	FSIP1	100032	chr15:39910446:-	ONLY_REF_SPLICE	YES	7	2	0.78	0.93	0.0761	0.1353	HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,FSIP1->chr15:39892232-40075031:-,fibrous_sheath_interacting_protein_1	CHAGOK1_LUNG	0.78	0.93	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	13	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.11	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	1	1	0.11	FALSE	344	821	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	SVIL--PIP4K2A	11	6	SVIL	19073	chr10:29818634:-	PIP4K2A	60663	chr10:22898646:-	ONLY_REF_SPLICE	YES	27	7	0.39	0.71	0.093	0.0507	SVIL->chr10:29746267-30025710:-,supervillin,PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha	CHAGOK1_LUNG	0.39	0.71	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	FAM211A--MT-CO3	11	5	FAM211A	8450	chr17:16344949:-	MT-CO3	11714	chrM:9412:+	INCL_NON_REF_SPLICE	YES	0	13662	1	0	0.093	0.0423	FAM211A->chr17:16344891-16395467:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CHAGOK1_LUNG	0	1	0.1353	FALSE	0	0	0	7	0	FALSE	ACH-000867
CHAGOK1_LUNG	PRKCI--MECOM	11	5	PRKCI	4669	chr3:169981217:+	MECOM	28031	chr3:169099312:-	ONLY_REF_SPLICE	YES	89	4	0.15	0.8	0.093	0.0423	{Klijn_CCL:Lung=1},PRKCI->ArcherDX_panel,FoundationOne_panel,chr3:169940153-170023769:+,protein_kinase_C_iota,MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-	CHAGOK1_LUNG	0.15	0.8	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	3	36	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	31	0	0.56	1	0.0254	0.3045	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.56	1	0.3299	FALSE	344	826	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TN	3	36	MT-TA	1053	chrM:5603:-	MT-TN	4097	chrM:5702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0.3045	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CHAGOK1_LUNG	1	1	0.3299	FALSE	369	2501	205	193	0	FALSE	ACH-000867
CHAGOK1_LUNG	RP11-488P3.1--GLMN	9	12	RP11-488P3.1	1248	chr1:94240753:-	GLMN	10376	chr1:92755863:-	ONLY_REF_SPLICE	YES	9	43	0.7	0.33	0.0761	0.1015	RP11-488P3.1->chr1:94218480-94241000:-,GLMN->Oncogene{Bushman},chr1:92711959-92764544:-,glomulin,_FKBP_associated_protein	CHAGOK1_LUNG	0.33	0.7	0.1776	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	NMT2--PDE3A	11	2	NMT2	1191	chr10:15210502:-	PDE3A	22910	chr12:20709594:+	ONLY_REF_SPLICE	YES	24	1	0.35	0.93	0.093	0.0169	NMT2->N-myristoyltransferase_2,chr10:15144583-15210692:-,PDE3A->chr12:20522179-20837315:+,phosphodiesterase_3A	CHAGOK1_LUNG	0.35	0.93	0.1099	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	HERC1--FSIP1	7	17	HERC1	1121	chr15:64126021:-	FSIP1	100032	chr15:39910446:-	ONLY_REF_SPLICE	YES	8	2	0.75	0.92	0.0592	0.1438	HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,FSIP1->chr15:39892232-40075031:-,fibrous_sheath_interacting_protein_1	CHAGOK1_LUNG	0.75	0.92	0.203	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TN	11	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.093	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CHAGOK1_LUNG	1	1	0.093	FALSE	369	2501	205	193	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	3	31	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	1	4	0.97	0.89	0.0254	0.2622	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.89	0.97	0.2876	FALSE	344	821	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	RP11-96H19.1--RP11-446N19.1	10	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.0846	0.0169	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CHAGOK1_LUNG	0.8	1	0.1015	FALSE	515	4851	409	746	0	FALSE	ACH-000867
CHAGOK1_LUNG	HSP90AB1--MT-RNR2	10	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2082	0	0.01	1	0.0846	0.0085	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHAGOK1_LUNG	0.01	1	0.0931	FALSE	13	9	0	364	0	FALSE	ACH-000867
CHAGOK1_LUNG	MECOM--PRKCI	10	1	MECOM	1283	chr3:169381124:-	PRKCI	46322	chr3:169999670:+	ONLY_REF_SPLICE	YES	4	119	0.73	0.08	0.0846	0.0085	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,PRKCI->ArcherDX_panel,FoundationOne_panel,chr3:169940153-170023769:+,protein_kinase_C_iota	CHAGOK1_LUNG	0.08	0.73	0.0931	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	9	5	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.78	0.0761	0.0423	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.78	1	0.1184	FALSE	344	821	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	APTX--NOL6	3	28	APTX	11552	chr9:32984629:-	NOL6	27090	chr9:33464964:-	INCL_NON_REF_SPLICE	YES	27	25	0.53	0.55	0.0254	0.2368	{Klijn_CCL:Lung=1},APTX->aprataxin,chr9:32972604-33025166:-,NOL6->chr9:33461439-33473928:-,nucleolar_protein_6	CHAGOK1_LUNG	0.53	0.55	0.2622	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	6	16	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	32	0	0.41	1	0.0507	0.1353	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.41	1	0.186	FALSE	344	826	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MTATP6P1--RP5-857K21.7	10	0	MTATP6P1	1122	chr1:569197:+	RP5-857K21.7	4832	chr1:568287:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0846	0	LOCAL_REARRANGEMENT:+:[258],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,RP5-857K21.7->chr1:568137-568818:+	CHAGOK1_LUNG	1	1	0.0846	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	RP11-314O13.1--CDYL2	10	0	RP11-314O13.1	1091	chr16:80926402:-	CDYL2	13750	chr16:80719026:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0846	0	NEIGHBORS[24406],RP11-314O13.1->chr16:80862632-80926492:-,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	CHAGOK1_LUNG	1	1	0.0846	FALSE	0	0	0	3	0	FALSE	ACH-000867
CHAGOK1_LUNG	RTN4R--AP2M1	10	0	RTN4R	5750	chr22:20255594:-	AP2M1	14078	chr3:183894739:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0846	0	RTN4R->chr22:20228938-20270769:-,reticulon_4_receptor,AP2M1->adaptor_related_protein_complex_2_mu_1_subunit,chr3:183892477-183901879:+	CHAGOK1_LUNG	1	1	0.0846	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	RP11-123O10.4--GRIP1	9	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0761	0.0254	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CHAGOK1_LUNG	1	1	0.1015	FALSE	416	2512	207	587	0	FALSE	ACH-000867
CHAGOK1_LUNG	SNX24--SNX2	9	2	SNX24	3255	chr5:122181388:+	SNX2	31255	chr5:122151591:+	ONLY_REF_SPLICE	YES	14	317	0.44	0.03	0.0761	0.0169	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[13331],SNX24->chr5:122179134-122365049:+,sorting_nexin_24,SNX2->chr5:122110691-122165803:+,sorting_nexin_2	CHAGOK1_LUNG	0.03	0.44	0.093	TRUE	0	0	0	1	0	FALSE	ACH-000867
CHAGOK1_LUNG	NOTCH2NL--MIER1	8	5	NOTCH2NL	4800	chr1:145248894:+	MIER1	36534	chr1:67450255:+	ONLY_REF_SPLICE	YES	36	15	0.27	0.46	0.0677	0.0423	NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like,MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+	CHAGOK1_LUNG	0.27	0.46	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	GMEB2--STMN3	8	3	GMEB2	4984	chr20:62234318:-	STMN3	18291	chr20:62275662:-	ONLY_REF_SPLICE	YES	43	15	0.2	0.42	0.0677	0.0254	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[12667],GMEB2->chr20:62218955-62258394:-,glucocorticoid_modulatory_element_binding_protein_2,STMN3->chr20:62271061-62284780:-,stathmin_3	CHAGOK1_LUNG	0.2	0.42	0.0931	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MECOM--PRKCI	8	2	MECOM	1283	chr3:169381124:-	PRKCI	36981	chr3:169953018:+	ONLY_REF_SPLICE	YES	4	57	0.71	0.15	0.0677	0.0169	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,PRKCI->ArcherDX_panel,FoundationOne_panel,chr3:169940153-170023769:+,protein_kinase_C_iota	CHAGOK1_LUNG	0.15	0.71	0.0846	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-CO2--MT-CO1	6	10	MT-CO2	1286	chrM:7871:+	MT-CO1	5166	chrM:6385:+	INCL_NON_REF_SPLICE	YES	180	20926	0.08	0	0.0507	0.0846	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CHAGOK1_LUNG	0	0.08	0.1353	FALSE	36	10	0	27	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	3	22	MT-ND4	1093	chrM:10852:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	9	0	0.74	1	0.0254	0.1861	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.74	1	0.2115	FALSE	344	826	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-CO2--MT-CO1	8	1	MT-CO2	1320	chrM:7905:+	MT-CO1	5908	chrM:7127:+	INCL_NON_REF_SPLICE	YES	210	504	0.04	0.02	0.0677	0.0085	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CHAGOK1_LUNG	0.02	0.04	0.0762	FALSE	36	10	0	27	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-CO2--MT-CO1	8	1	MT-CO2	1222	chrM:7807:+	MT-CO1	5903	chrM:7122:+	INCL_NON_REF_SPLICE	YES	91	536	0.09	0.02	0.0677	0.0085	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CHAGOK1_LUNG	0.02	0.09	0.0762	FALSE	36	10	0	27	0	FALSE	ACH-000867
CHAGOK1_LUNG	RP11-304L19.1--CRAMP1L	8	1	RP11-304L19.1	2303	chr16:2143013:+	CRAMP1L	11702	chr16:1682213:+	ONLY_REF_SPLICE	YES	14	17	0.39	0.35	0.0677	0.0085	RP11-304L19.1->chr16:2141437-2145426:+,CRAMP1L->chr16:1662326-1727909:+	CHAGOK1_LUNG	0.35	0.39	0.0762	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	4	16	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	53	0	0.27	1	0.0338	0.1353	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.27	1	0.1691	FALSE	344	827	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND6--MT-TE	3	20	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0254	0.1692	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHAGOK1_LUNG	0.92	1	0.1946	FALSE	499	1288	110	792	0	FALSE	ACH-000867
CHAGOK1_LUNG	PRR16--CTD-2334D19.1	7	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	95	1	0.1	0.91	0.0592	0.0254	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CHAGOK1_LUNG	0.1	0.91	0.0846	FALSE	56	216	12	147	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND1--MT-TL1	6	6	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.0507	0.0507	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	CHAGOK1_LUNG	0.8	1	0.1014	FALSE	210	95	5	49	0	FALSE	ACH-000867
CHAGOK1_LUNG	BCAR3--GLMN	7	1	BCAR3	2227	chr1:94311123:-	GLMN	31811	chr1:92757094:-	ONLY_REF_SPLICE	YES	0	20	1	0.29	0.0592	0.0085	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,GLMN->Oncogene{Bushman},chr1:92711959-92764544:-,glomulin,_FKBP_associated_protein	CHAGOK1_LUNG	0.29	1	0.0677	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	7	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	5	2	0.62	0.8	0.0592	0.0085	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.62	0.8	0.0677	FALSE	344	821	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	APTX--NOL6	5	8	APTX	11552	chr9:32984629:-	NOL6	27895	chr9:33464159:-	ONLY_REF_SPLICE	YES	27	37	0.33	0.26	0.0423	0.0677	{Klijn_CCL:Lung=1},APTX->aprataxin,chr9:32972604-33025166:-,NOL6->chr9:33461439-33473928:-,nucleolar_protein_6	CHAGOK1_LUNG	0.26	0.33	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	CMTM4--NAE1	7	0	CMTM4	1368	chr16:66730243:-	NAE1	18773	chr16:66860683:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0592	0	CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,NAE1->NEDD8_activating_enzyme_E1_subunit_1,chr16:66836778-66907159:-	CHAGOK1_LUNG	1	1	0.0592	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-CO2--MT-CO1	5	8	MT-CO2	1493	chrM:8078:+	MT-CO1	5625	chrM:6844:+	INCL_NON_REF_SPLICE	YES	5	8560	0.72	0	0.0423	0.0677	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CHAGOK1_LUNG	0	0.72	0.11	FALSE	36	10	0	27	0	FALSE	ACH-000867
CHAGOK1_LUNG	PDE4D--CDHR2	6	4	PDE4D	39303	chr5:58334686:-	CDHR2	64338	chr5:175995679:+	ONLY_REF_SPLICE	YES	129	0	0.07	1	0.0507	0.0338	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,CDHR2->cadherin_related_family_member_2,chr5:175969512-176022975:+	CHAGOK1_LUNG	0.07	1	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TC	3	14	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0.1184	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CHAGOK1_LUNG	1	1	0.1438	FALSE	462	80	0	856	0	FALSE	ACH-000867
CHAGOK1_LUNG	RBMS3--AP005135.2	6	2	RBMS3	2948	chr3:29476406:+	AP005135.2	34900	chr11:134931841:-	ONLY_REF_SPLICE	YES	11	0	0.42	1	0.0507	0.0169	RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+,AP005135.2->chr11:134931675-134945793:-	CHAGOK1_LUNG	0.42	1	0.0676	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-CO2--MT-CO1	3	13	MT-CO2	1396	chrM:7981:+	MT-CO1	5348	chrM:6567:+	INCL_NON_REF_SPLICE	NO	17	22823	0.48	0	0.0254	0.11	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CHAGOK1_LUNG	0	0.48	0.1354	FALSE	36	10	0	27	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-CO2--MT-CO1	3	13	MT-CO2	1443	chrM:8028:+	MT-CO1	5365	chrM:6584:+	INCL_NON_REF_SPLICE	YES	13	23715	0.55	0	0.0254	0.11	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CHAGOK1_LUNG	0	0.55	0.1354	FALSE	36	10	0	27	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TC	3	12	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0.1015	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CHAGOK1_LUNG	1	1	0.1269	FALSE	462	80	0	856	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TN	6	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CHAGOK1_LUNG	1	1	0.0507	FALSE	369	2501	205	193	0	FALSE	ACH-000867
CHAGOK1_LUNG	MTATP6P1--RP5-857K21.7	6	0	MTATP6P1	1158	chr1:569233:+	RP5-857K21.7	4834	chr1:568289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0	LOCAL_REARRANGEMENT:+:[258],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,RP5-857K21.7->chr1:568137-568818:+	CHAGOK1_LUNG	1	1	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	CCPG1--SHC4	4	7	CCPG1	1664	chr15:55700045:-	SHC4	28044	chr15:49183008:-	ONLY_REF_SPLICE	YES	23	0	0.32	1	0.0338	0.0592	CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	CHAGOK1_LUNG	0.32	1	0.093	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-CO2--MT-CO1	3	11	MT-CO2	1306	chrM:7891:+	MT-CO1	5170	chrM:6389:+	INCL_NON_REF_SPLICE	YES	194	21068	0.07	0	0.0254	0.093	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CHAGOK1_LUNG	0	0.07	0.1184	FALSE	36	10	0	27	0	FALSE	ACH-000867
CHAGOK1_LUNG	NDUFA10--AC124861.1	5	3	NDUFA10	12749	chr2:240929491:-	AC124861.1	30009	chr2:241168069:-	ONLY_REF_SPLICE	YES	432	0	0.02	1	0.0423	0.0254	NDUFA10->NADH:ubiquinone_oxidoreductase_subunit_A10,chr2:240831867-240964819:-,AC124861.1->chr2:241166977-241195452:-	CHAGOK1_LUNG	0.02	1	0.0677	TRUE	0	0	0	1	0	FALSE	ACH-000867
CHAGOK1_LUNG	C15orf57--CBX3	5	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	29	59	0.19	0.11	0.0423	0.0169	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CHAGOK1_LUNG	0.11	0.19	0.0592	TRUE	267	562	48	632	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-CO2--MT-CO1	3	10	MT-CO2	1278	chrM:7863:+	MT-CO1	5001	chrM:6220:+	INCL_NON_REF_SPLICE	YES	159	19643	0.08	0	0.0254	0.0846	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CHAGOK1_LUNG	0	0.08	0.11	FALSE	36	10	0	27	0	FALSE	ACH-000867
CHAGOK1_LUNG	TCEA1P4--NOL6	5	2	TCEA1P4	1338	chr9:32980064:-	NOL6	13366	chr9:33464974:-	INCL_NON_REF_SPLICE	YES	5	27	0.58	0.21	0.0423	0.0169	TCEA1P4->chr9:32979558-32980401:-,transcription_elongation_factor_A1_pseudogene_4,NOL6->chr9:33461439-33473928:-,nucleolar_protein_6	CHAGOK1_LUNG	0.21	0.58	0.0592	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	APTX--NOL6	4	5	APTX	11552	chr9:32984629:-	NOL6	28136	chr9:33463918:-	ONLY_REF_SPLICE	YES	27	69	0.25	0.12	0.0338	0.0423	{Klijn_CCL:Lung=1},APTX->aprataxin,chr9:32972604-33025166:-,NOL6->chr9:33461439-33473928:-,nucleolar_protein_6	CHAGOK1_LUNG	0.12	0.25	0.0761	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-ND4--MT-ND4L	5	1	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	6	0	0.5	1	0.0423	0.0085	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHAGOK1_LUNG	0.5	1	0.0508	FALSE	344	821	44	306	0	FALSE	ACH-000867
CHAGOK1_LUNG	SKIL--MECOM	1	17	SKIL	4752	chr3:170079217:+	MECOM	30895	chr3:168849319:-	ONLY_REF_SPLICE	NO	55	44	0.25	0.29	0.0085	0.1438	{Klijn_CCL:Lung=1},SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+,MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-	CHAGOK1_LUNG	0.25	0.29	0.1523	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	MT-CO2--MT-CO1	4	4	MT-CO2	1278	chrM:7863:+	MT-CO1	5602	chrM:6821:+	INCL_NON_REF_SPLICE	YES	159	10224	0.05	0	0.0338	0.0338	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CHAGOK1_LUNG	0	0.05	0.0676	FALSE	36	10	0	27	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-CO2--MT-CO1	3	8	MT-CO2	1216	chrM:7801:+	MT-CO1	5215	chrM:6434:+	INCL_NON_REF_SPLICE	YES	87	21251	0.11	0	0.0254	0.0677	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CHAGOK1_LUNG	0	0.11	0.0931	FALSE	36	10	0	27	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHAGOK1_LUNG	1	1	0.0423	FALSE	499	1288	110	792	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TN	5	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CHAGOK1_LUNG	1	1	0.0423	FALSE	369	2501	205	193	0	FALSE	ACH-000867
CHAGOK1_LUNG	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CHAGOK1_LUNG	1	1	0.0423	FALSE	292	1546	117	613	0	FALSE	ACH-000867
CHAGOK1_LUNG	RP11-446H18.5--LINC00882	5	0	RP11-446H18.5	2362	chr3:107099432:-	LINC00882	18018	chr3:106848839:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	NEIGHBORS[31970],RP11-446H18.5->chr3:106991458-107101007:-,LINC00882->chr3:106555658-106959488:-,long_intergenic_non-protein_coding_RNA_882	CHAGOK1_LUNG	1	1	0.0423	FALSE	34	17	3	1	0	FALSE	ACH-000867
CHAGOK1_LUNG	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0338	0.0254	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CHAGOK1_LUNG	0.7	1	0.0592	FALSE	275	511	55	178	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-CO2--MT-CO1	3	5	MT-CO2	1293	chrM:7878:+	MT-CO1	5518	chrM:6737:+	INCL_NON_REF_SPLICE	YES	188	18018	0.04	0	0.0254	0.0423	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CHAGOK1_LUNG	0	0.04	0.0677	FALSE	36	10	0	27	0	FALSE	ACH-000867
CHAGOK1_LUNG	MTATP6P1--RP5-857K21.7	4	1	MTATP6P1	1108	chr1:569183:+	RP5-857K21.7	4818	chr1:568273:+	INCL_NON_REF_SPLICE	YES	59	89	0.08	0.05	0.0338	0.0085	LOCAL_REARRANGEMENT:+:[258],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,RP5-857K21.7->chr1:568137-568818:+	CHAGOK1_LUNG	0.05	0.08	0.0423	TRUE	0	0	0	1	0	FALSE	ACH-000867
CHAGOK1_LUNG	HSP90AB1--MT-RNR2	4	0	HSP90AB1	4399	chr6:44218222:+	MT-RNR2	11352	chrM:2225:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHAGOK1_LUNG	1	1	0.0338	FALSE	0	0	0	11	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHAGOK1_LUNG	1	1	0.0338	FALSE	499	1288	110	792	0	FALSE	ACH-000867
CHAGOK1_LUNG	MTATP6P1--RP5-857K21.7	4	0	MTATP6P1	1120	chr1:569195:+	RP5-857K21.7	4828	chr1:568283:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:+:[258],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,RP5-857K21.7->chr1:568137-568818:+	CHAGOK1_LUNG	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	STX16--RPS18	4	0	STX16	4975	chr20:57243183:+	RPS18	16413	chr6:33239854:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	STX16->chr20:57226328-57254582:+,syntaxin_16,RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18	CHAGOK1_LUNG	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	RP11-680G10.1--GSE1	3	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	57	1	0.1	0.0254	0.0254	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CHAGOK1_LUNG	0.1	1	0.0508	TRUE	458	1351	185	561	0	FALSE	ACH-000867
CHAGOK1_LUNG	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0.0254	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CHAGOK1_LUNG	1	1	0.0508	FALSE	467	2173	244	435	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND1--MT-TL1	3	2	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	11	0	0.31	1	0.0254	0.0169	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	CHAGOK1_LUNG	0.31	1	0.0423	FALSE	210	95	5	49	0	FALSE	ACH-000867
CHAGOK1_LUNG	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	29	0	0.15	1	0.0254	0.0169	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CHAGOK1_LUNG	0.15	1	0.0423	FALSE	125	705	46	456	0	FALSE	ACH-000867
CHAGOK1_LUNG	DNAJC13--PIGB	3	1	DNAJC13	1235	chr3:132136604:+	PIGB	64113	chr15:55621922:+	ONLY_REF_SPLICE	YES	4	15	0.5	0.21	0.0254	0.0085	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,PIGB->chr15:55611158-55647846:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_B	CHAGOK1_LUNG	0.21	0.5	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	DNAJC13--PIGB	3	1	DNAJC13	1235	chr3:132136604:+	PIGB	61953	chr15:55616978:+	ONLY_REF_SPLICE	YES	4	20	0.5	0.17	0.0254	0.0085	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,PIGB->chr15:55611158-55647846:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_B	CHAGOK1_LUNG	0.17	0.5	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	DPH6-AS1--RP11-684B21.1	3	1	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0.0085	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	CHAGOK1_LUNG	1	1	0.0339	TRUE	17	119	17	33	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-TA--MT-TN	3	1	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0.0085	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CHAGOK1_LUNG	1	1	0.0339	FALSE	369	2501	205	193	0	FALSE	ACH-000867
CHAGOK1_LUNG	MTATP6P1--RP5-857K21.7	3	1	MTATP6P1	1123	chr1:569198:+	RP5-857K21.7	4811	chr1:568266:+	INCL_NON_REF_SPLICE	YES	99	97	0.04	0.04	0.0254	0.0085	LOCAL_REARRANGEMENT:+:[258],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,RP5-857K21.7->chr1:568137-568818:+	CHAGOK1_LUNG	0.04	0.04	0.0339	TRUE	0	0	0	1	0	FALSE	ACH-000867
CHAGOK1_LUNG	FYN--MT-ND5	3	0	FYN	17786	chr6:112041157:-	MT-ND5	37307	chrM:13053:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	CHAGOK1_LUNG	1	1	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000867
CHAGOK1_LUNG	FYN--MT-ND5	3	0	FYN	17810	chr6:112041133:-	MT-ND5	37335	chrM:13081:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	CHAGOK1_LUNG	1	1	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000867
CHAGOK1_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHAGOK1_LUNG	1	1	0.0254	FALSE	499	1288	110	792	0	FALSE	ACH-000867
CHAGOK1_LUNG	TEAD1--PARVA	3	0	TEAD1	2140	chr11:12697108:+	PARVA	32787	chr11:12495292:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	CHAGOK1_LUNG	1	1	0.0254	TRUE	0	2	0	5	2	TRUE	ACH-000867
CHAGOK1_LUNG	WTAPP1--RUVBL1	3	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	CHAGOK1_LUNG	1	1	0.0254	TRUE	9	252	6	66	0	FALSE	ACH-000867
CHAGOK1_LUNG	DNAJC13--PIGB	2	1	DNAJC13	1235	chr3:132136604:+	PIGB	63008	chr15:55619729:+	ONLY_REF_SPLICE	YES	4	16	0.43	0.16	0.0169	0.0085	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,PIGB->chr15:55611158-55647846:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_B	CHAGOK1_LUNG	0.16	0.43	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	IL6R--GATAD2B	2	1	IL6R	6487	chr1:154408586:+	GATAD2B	20688	chr1:153800824:-	ONLY_REF_SPLICE	YES	3	27	0.5	0.1	0.0169	0.0085	GTEx&tcga_normals:1/3694=0.03%,IL6R->chr1:154377669-154441926:+,interleukin_6_receptor,GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-	CHAGOK1_LUNG	0.1	0.5	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	RP11-314O13.1--CDYL2	2	1	RP11-314O13.1	3268	chr16:80874016:-	CDYL2	13750	chr16:80719026:-	ONLY_REF_SPLICE	YES	79	28	0.04	0.1	0.0169	0.0085	NEIGHBORS[24406],RP11-314O13.1->chr16:80862632-80926492:-,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	CHAGOK1_LUNG	0.04	0.1	0.0254	FALSE	0	0	0	4	0	FALSE	ACH-000867
CHAGOK1_LUNG	ATP11A--CUL4A	2	0	ATP11A	31176	chr13:113516889:+	CUL4A	67191	chr13:113917801:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,CUL4A->chr13:113862552-113919399:+,cullin_4A	CHAGOK1_LUNG	1	1	0.0169	TRUE	0	1	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	CCPG1--SHC4	1	4	CCPG1	1290	chr15:55700419:-	SHC4	29108	chr15:49176564:-	ONLY_REF_SPLICE	YES	19	0	0.21	1	0.0085	0.0338	CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	CHAGOK1_LUNG	0.21	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	RPS19--POU2F2	2	0	RPS19	1577	chr19:42364564:+	POU2F2	17092	chr19:42626728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19,POU2F2->Oncogene{Bushman},POU_class_2_homeobox_2,chr19:42590263-42700737:-	CHAGOK1_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	RPS25--DNAJC16	2	0	RPS25	1410	chr11:118888992:-	DNAJC16	19725	chr1:15892414:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25,DNAJC16->DnaJ_heat_shock_protein_family_(Hsp40)_member_C16,chr1:15853308-15918874:+	CHAGOK1_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	TEAD1--PARVA	2	0	TEAD1	4496	chr11:12785981:+	PARVA	38719	chr11:12518005:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	CHAGOK1_LUNG	1	1	0.0169	TRUE	0	0	0	2	0	TRUE	ACH-000867
CHAGOK1_LUNG	TRAM1--NCL	2	0	TRAM1	1311	chr8:71520312:-	NCL	26972	chr2:232320335:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	TRAM1->chr8:71485677-71520622:-,translocation_associated_membrane_protein_1,NCL->chr2:232318242-232348352:-,nucleolin	CHAGOK1_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	UFD1L--TXNRD2	2	0	UFD1L	1391	chr22:19466348:-	TXNRD2	24348	chr22:19907122:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	UFD1L->chr22:19437433-19466738:-,ubiquitin_fusion_degradation_1_like_(yeast),TXNRD2->chr22:19863040-19929341:-,thioredoxin_reductase_2	CHAGOK1_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	KDM5B--MIER1	1	3	KDM5B	3494	chr1:202776105:-	MIER1	57021	chr1:67450255:+	ONLY_REF_SPLICE	YES	42	15	0.09	0.21	0.0085	0.0254	KDM5B->chr1:202696526-202778598:-,lysine_demethylase_5B,MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+	CHAGOK1_LUNG	0.09	0.21	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	36	0	0.1	1	0.0085	0.0254	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CHAGOK1_LUNG	0.1	1	0.0339	FALSE	164	806	69	479	0	FALSE	ACH-000867
CHAGOK1_LUNG	PIGB--TLN2	1	3	PIGB	7863	chr15:55626205:+	TLN2	24282	chr15:62881886:+	ONLY_REF_SPLICE	NO	31	0	0.11	1	0.0085	0.0254	PIGB->chr15:55611158-55647846:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_B,TLN2->chr15:62682725-63136830:+,talin_2	CHAGOK1_LUNG	0.11	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	PRKACB--HIVEP3	1	3	PRKACB	1310	chr1:84544054:+	HIVEP3	30125	chr1:42331286:-	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0085	0.0254	PRKACB->chr1:84543745-84704181:+,protein_kinase_cAMP-activated_catalytic_subunit_beta,HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3	CHAGOK1_LUNG	0.19	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	PRR16--CTD-2334D19.1	1	3	PRR16	6887	chr5:119954260:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	102	1	0.04	0.8	0.0085	0.0254	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CHAGOK1_LUNG	0.04	0.8	0.0339	FALSE	0	2	0	14	0	FALSE	ACH-000867
CHAGOK1_LUNG	PRR16--CTD-2334D19.1	1	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	95	0	0.04	1	0.0085	0.0254	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CHAGOK1_LUNG	0.04	1	0.0339	FALSE	1	13	0	24	0	FALSE	ACH-000867
CHAGOK1_LUNG	ATP11A--CUL4A	1	2	ATP11A	34653	chr13:113530255:+	CUL4A	67191	chr13:113917801:+	ONLY_REF_SPLICE	YES	1089	222	0	0.01	0.0085	0.0169	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,CUL4A->chr13:113862552-113919399:+,cullin_4A	CHAGOK1_LUNG	0	0.01	0.0254	FALSE	0	7	0	5	3	FALSE	ACH-000867
CHAGOK1_LUNG	NMT2--PDE3A	1	2	NMT2	1334	chr10:15210359:-	PDE3A	22910	chr12:20709594:+	ONLY_REF_SPLICE	YES	27	1	0.1	0.75	0.0085	0.0169	NMT2->N-myristoyltransferase_2,chr10:15144583-15210692:-,PDE3A->chr12:20522179-20837315:+,phosphodiesterase_3A	CHAGOK1_LUNG	0.1	0.75	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	RP11-532F12.5--INO80	1	2	RP11-532F12.5	3467	chr15:41130741:-	INO80	41060	chr15:41279391:-	ONLY_REF_SPLICE	YES	97	39	0.03	0.07	0.0085	0.0169	RP11-532F12.5->chr15:41128006-41136585:-,INO80->INO80_complex_subunit,chr15:41271078-41408552:-	CHAGOK1_LUNG	0.03	0.07	0.0254	TRUE	0	0	0	1	0	FALSE	ACH-000867
CHAGOK1_LUNG	SEPT11--CCNI	1	2	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	71	135	0.04	0.02	0.0085	0.0169	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	CHAGOK1_LUNG	0.02	0.04	0.0254	TRUE	0	1	0	17	0	FALSE	ACH-000867
CHAGOK1_LUNG	SNX24--SNX2	1	2	SNX24	4349	chr5:122189462:+	SNX2	31255	chr5:122151591:+	ONLY_REF_SPLICE	YES	23	317	0.12	0.01	0.0085	0.0169	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[13331],SNX24->chr5:122179134-122365049:+,sorting_nexin_24,SNX2->chr5:122110691-122165803:+,sorting_nexin_2	CHAGOK1_LUNG	0.01	0.12	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000867
CHAGOK1_LUNG	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0085	0.0169	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CHAGOK1_LUNG	1	1	0.0254	TRUE	62	24	1	171	0	FALSE	ACH-000867
CHAGOK1_LUNG	DNAJC13--TLN2	1	1	DNAJC13	1235	chr3:132136604:+	TLN2	64115	chr15:62910550:+	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0085	0.0085	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,TLN2->chr15:62682725-63136830:+,talin_2	CHAGOK1_LUNG	0.33	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000867
CHAGOK1_LUNG	PPP1R12B--IPO9	1	1	PPP1R12B	7394	chr1:202398057:+	IPO9	69936	chr1:201843378:+	ONLY_REF_SPLICE	NO	6	61	0.25	0.03	0.0085	0.0085	PPP1R12B->chr1:202317827-202561834:+,protein_phosphatase_1_regulatory_subunit_12B,IPO9->chr1:201798269-201853422:+,importin_9	CHAGOK1_LUNG	0.03	0.25	0.017	TRUE	0	0	0	1	0	FALSE	ACH-000867
CHAGOK1_LUNG	PPP1R12B--IPO9	1	1	PPP1R12B	7394	chr1:202398057:+	IPO9	68802	chr1:201841956:+	ONLY_REF_SPLICE	YES	6	97	0.25	0.02	0.0085	0.0085	PPP1R12B->chr1:202317827-202561834:+,protein_phosphatase_1_regulatory_subunit_12B,IPO9->chr1:201798269-201853422:+,importin_9	CHAGOK1_LUNG	0.02	0.25	0.017	TRUE	0	0	0	1	0	FALSE	ACH-000867
CHAGOK1_LUNG	RCC1--SEPT2	1	1	RCC1	2920	chr1:28835417:+	SEPT2	34176	chr2:242287549:+	ONLY_REF_SPLICE	YES	11	721	0.15	0	0.0085	0.0085	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2	CHAGOK1_LUNG	0	0.15	0.017	FALSE	0	0	0	2	0	FALSE	ACH-000867
CHAGOK1_LUNG	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0085	0.0085	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CHAGOK1_LUNG	1	1	0.017	FALSE	93	270	15	244	0	FALSE	ACH-000867
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3D-11--AC096579.7	5807	9623	IGKV3D-11	1604	chr2:90212246:+	AC096579.7	6301	chr2:89161429:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	52.5151	87.0248	GTEx_FI:{Lung=[count:2=pct:1.2]},IGKV3D-11->chr2:90211643-90212253:+,immunoglobulin_kappa_variable_3D-11,AC096579.7->chr2:89130700-89165653:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	139.5399	TRUE	0	1	0	1	1	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3D-11--AC096579.7	3	8358	IGKV3D-11	1604	chr2:90212246:+	AC096579.7	6316	chr2:89161414:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0271	75.5849	GTEx_FI:{Lung=[count:2=pct:1.2]},IGKV3D-11->chr2:90211643-90212253:+,immunoglobulin_kappa_variable_3D-11,AC096579.7->chr2:89130700-89165653:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	75.612	TRUE	0	1	0	1	1	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	457	3	ANP32B	9252	chr9:100774754:+	NCL	18735	chr2:232326361:-	INCL_NON_REF_SPLICE	YES	797	2240	0.37	0.17	4.1328	0.0271	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.37	4.1599	TRUE	0	0	0	7	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	147	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.3294	0.2623	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.5917	TRUE	508	994	45	981	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	116	3	ANP32B	9252	chr9:100774754:+	NCL	18675	chr2:232326421:-	INCL_NON_REF_SPLICE	YES	797	2334	0.13	0.05	1.049	0.0271	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.13	1.0761	TRUE	0	0	0	7	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	115	1	ANP32B	8161	chr9:100773632:+	NCL	19608	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	1137	2206	0.09	0.05	1.04	0.009	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.09	1.049	TRUE	0	0	0	7	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	92	2	ANP32B	9252	chr9:100774754:+	NCL	19621	chr2:232325475:-	INCL_NON_REF_SPLICE	YES	797	2207	0.11	0.04	0.832	0.0181	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.11	0.8501	TRUE	0	0	0	7	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPAP2B--RP11-504A18.1	83	19	PPAP2B	11874	chr1:56962227:-	RP11-504A18.1	19126	chr1:56714873:-	INCL_NON_REF_SPLICE	YES	32	0	0.76	1	0.7506	0.1718	PPAP2B->Oncogene{Bushman},chr1:56960419-57110974:-,RP11-504A18.1->chr1:56713966-56724243:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.9224	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	85	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	252	5	0.26	0.95	0.7687	0.0181	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.95	0.7868	TRUE	519	3926	326	965	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	72	30	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	50	93	0.67	0.52	0.6511	0.2713	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.67	0.9224	TRUE	181	1564	124	196	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SENP6--STXBP5-AS1	70	33	SENP6	4031	chr6:76331341:+	STXBP5-AS1	56437	chr6:147172467:-	ONLY_REF_SPLICE	YES	42	0	0.71	1	0.633	0.2984	SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.9314	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SENP6--STXBP5-AS1	52	17	SENP6	2068	chr6:76312292:+	STXBP5-AS1	56437	chr6:147172467:-	ONLY_REF_SPLICE	YES	33	0	0.68	1	0.4703	0.1537	SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	1	0.624	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	50	6	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.4522	0.0543	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.5065	FALSE	46	201	11	112	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRG--UTRN	42	10	PTPRG	2909	chr3:61734656:+	UTRN	69948	chr6:144782333:+	ONLY_REF_SPLICE	YES	19	3	0.73	0.95	0.3798	0.0904	PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,UTRN->chr6:144606837-145174170:+,utrophin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.95	0.4702	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	38	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3436	0.0543	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3979	FALSE	462	80	0	856	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	36	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3256	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3256	TRUE	0	0	0	518	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KAT6A--PLEKHA5	25	19	KAT6A	3420	chr8:41905896:-	PLEKHA5	34563	chr12:19285327:+	ONLY_REF_SPLICE	YES	27	17	0.62	0.72	0.2261	0.1718	KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A,PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.72	0.3979	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SENP6--STXBP5-AS1	19	36	SENP6	5139	chr6:76332574:+	STXBP5-AS1	56437	chr6:147172467:-	ONLY_REF_SPLICE	YES	44	0	0.56	1	0.1718	0.3256	SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.4974	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	26	2	ANP32B	8188	chr9:100773659:+	NCL	18698	chr2:232326398:-	INCL_NON_REF_SPLICE	YES	1166	2367	0.02	0.01	0.2351	0.0181	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.2532	TRUE	0	0	0	7	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OR51S1--TP53I11	26	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2351	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2351	TRUE	402	216	10	229	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	24	5	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.217	0.0452	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2622	TRUE	13	49	2	38	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	24	2	ANP32B	10264	chr9:100777657:+	NCL	19624	chr2:232325472:-	INCL_NON_REF_SPLICE	YES	618	2266	0.04	0.01	0.217	0.0181	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.2351	TRUE	0	0	0	2	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	24	0	ANP32B	6936	chr9:100767435:+	NCL	19660	chr2:232325436:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.217	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.217	TRUE	0	0	0	2	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	24	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.217	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.217	TRUE	0	0	0	434	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	22	3	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	5785	0	0	1	0.199	0.0271	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2261	TRUE	0	0	0	100	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BIRC6--FBXO11	16	15	BIRC6	3779	chr2:32605358:+	FBXO11	89981	chr2:48066908:-	ONLY_REF_SPLICE	YES	38	11	0.45	0.74	0.1447	0.1357	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,FBXO11->F-box_protein_11,chr2:48016455-48132932:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.74	0.2804	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	18	4	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3064	0	0.01	1	0.1628	0.0362	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.199	FALSE	13	9	0	364	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCND1--MT-ND1	18	2	CCND1	1290	chr11:69456144:+	MT-ND1	12240	chrM:3322:+	INCL_NON_REF_SPLICE	YES	5215	0	0	1	0.1628	0.0181	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1809	FALSE	0	0	0	5	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXDC1--TAF13	18	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1628	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1628	TRUE	7	10	0	216	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	17	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1537	0.009	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1627	FALSE	499	1288	110	792	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BIRC6--FBXO11	16	4	BIRC6	1459	chr2:32582554:+	FBXO11	89981	chr2:48066908:-	ONLY_REF_SPLICE	YES	18	11	0.53	0.65	0.1447	0.0362	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,FBXO11->F-box_protein_11,chr2:48016455-48132932:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	0.65	0.1809	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	16	2	ANP32B	8188	chr9:100773659:+	NCL	19626	chr2:232325470:-	INCL_NON_REF_SPLICE	YES	1166	2237	0.02	0.01	0.1447	0.0181	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.1628	TRUE	0	0	0	7	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXO11--BIRC6	15	6	FBXO11	1305	chr2:48132628:-	BIRC6	32152	chr2:32613818:+	ONLY_REF_SPLICE	YES	10	37	0.68	0.36	0.1357	0.0543	FBXO11->F-box_protein_11,chr2:48016455-48132932:-,BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.68	0.19	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	15	1	ANP32B	8117	chr9:100773588:+	NCL	18675	chr2:232326421:-	INCL_NON_REF_SPLICE	YES	1128	2334	0.01	0.01	0.1357	0.009	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.1447	TRUE	0	0	0	7	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	14	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1266	0.009	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1356	TRUE	477	1352	189	275	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSC1--PRRC2B	12	6	TSC1	9644	chr9:135796750:-	PRRC2B	41813	chr9:134334551:+	ONLY_REF_SPLICE	YES	26	185	0.41	0.09	0.1085	0.0543	TSC1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:135766735-135820020:-,tuberous_sclerosis_1,PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.41	0.1628	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0995	0.0814	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.1809	FALSE	499	1288	110	792	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3D-11--AC096579.7	7	23	IGKV3D-11	1146	chr2:90211788:+	AC096579.7	7333	chr2:89157196:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0633	0.208	GTEx_FI:{Lung=[count:2=pct:1.2]},IGKV3D-11->chr2:90211643-90212253:+,immunoglobulin_kappa_variable_3D-11,AC096579.7->chr2:89130700-89165653:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2713	TRUE	0	2	0	1	2	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AKNA--FBXL20	11	6	AKNA	6903	chr9:117136373:-	FBXL20	38539	chr17:37455337:-	ONLY_REF_SPLICE	YES	265	8	0.06	0.68	0.0995	0.0543	AKNA->AT-hook_transcription_factor,chr9:117096436-117156685:-,FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.68	0.1538	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	10	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0904	0.0543	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1447	FALSE	462	80	0	856	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	11	1	ANP32B	8117	chr9:100773588:+	NCL	18663	chr2:232326433:-	INCL_NON_REF_SPLICE	YES	1128	2410	0.01	0	0.0995	0.009	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1085	TRUE	0	0	0	7	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	11	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0995	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0995	TRUE	0	0	0	81	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXL20--AKNA	10	0	FBXL20	5355	chr17:37457254:-	AKNA	29674	chr9:117130875:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0904	0	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,AKNA->AT-hook_transcription_factor,chr9:117096436-117156685:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0904	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3104	0	0	1	0.0814	0.0271	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1085	FALSE	13	9	0	364	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	9	1	ANP32B	8161	chr9:100773632:+	NCL	18803	chr2:232326293:-	INCL_NON_REF_SPLICE	YES	1137	2095	0.01	0	0.0814	0.009	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0904	FALSE	0	0	0	7	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KAT6A--PLEKHA5	6	13	KAT6A	3420	chr8:41905896:-	PLEKHA5	43325	chr12:19406874:+	ONLY_REF_SPLICE	YES	27	14	0.41	0.58	0.0543	0.1176	KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A,PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.58	0.1719	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC024084.1--AC009784.3	8	3	AC024084.1	3174	chr7:135743253:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.0723	0.0271	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.0994	FALSE	2	5	0	14	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	7	7	AC131097.3	2273	chr2:242824786:+	AC093642.5	11670	chr2:243037038:+	ONLY_REF_SPLICE	YES	10	4	0.58	0.78	0.0633	0.0633	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	0.78	0.1266	FALSE	3	20	2	16	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	8	2	ANP32B	9252	chr9:100774754:+	NCL	19519	chr2:232325577:-	ONLY_REF_SPLICE	YES	797	3064	0.01	0	0.0723	0.0181	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0904	FALSE	0	0	0	7	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KAT6A--PLEKHA5	3	21	KAT6A	3420	chr8:41905896:-	PLEKHA5	32427	chr12:19282687:+	INCL_NON_REF_SPLICE	YES	27	0	0.47	1	0.0271	0.1899	KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A,PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.217	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SENP6--STXBP5-AS1	8	1	SENP6	2068	chr6:76312292:+	STXBP5-AS1	58610	chr6:147165848:-	ONLY_REF_SPLICE	YES	33	86	0.21	0.09	0.0723	0.009	SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.21	0.0813	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	7	1	IGH@	97640	chr14:106321054:-	TMSB4X	131816	chrX:12993241:+	INCL_NON_REF_SPLICE	YES	8671	0	0	1	0.0633	0.009	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0723	FALSE	0	0	0	6	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	6	3	ANP32B	10264	chr9:100777657:+	NCL	18786	chr2:232326310:-	INCL_NON_REF_SPLICE	NO	618	2199	0.01	0	0.0543	0.0271	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0814	FALSE	0	0	0	2	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	5	MT-ATP6	1185	chrM:8711:+	MT-CO1	4986	chrM:6208:+	INCL_NON_REF_SPLICE	NO	12397	15122	0	0	0.0452	0.0452	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0904	FALSE	183	104	9	328	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0543	FALSE	183	104	9	328	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	6	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0543	TRUE	0	0	0	434	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	5	3	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0.0271	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0723	TRUE	0	1	0	84	1	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	11	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0271	0.0995	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1266	FALSE	499	1288	110	792	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0.0543	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0905	FALSE	499	1288	110	792	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	5	2	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0452	0.0181	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0633	FALSE	141	264	50	91	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0.009	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0542	FALSE	499	1288	110	792	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0362	0.0452	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.0814	FALSE	407	2205	196	549	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	5	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0452	TRUE	0	0	0	81	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0452	FALSE	183	104	9	328	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0452	FALSE	183	104	9	328	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BIRC6--FBXO11	1	15	BIRC6	3779	chr2:32605358:+	FBXO11	88880	chr2:48093031:-	ONLY_REF_SPLICE	YES	38	14	0.3	0.53	0.009	0.1357	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,FBXO11->F-box_protein_11,chr2:48016455-48132932:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.53	0.1447	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	4	3	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0.0271	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0633	TRUE	0	1	0	84	1	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	4	2	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	8873	chr5:97235342:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.67	0.0362	0.0181	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0543	TRUE	0	1	0	5	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBALD2--MT-CO3	4	2	UBALD2	1748	chr17:74262030:+	MT-CO3	7075	chrM:9412:+	INCL_NON_REF_SPLICE	YES	709	12601	0.01	0	0.0362	0.0181	UBALD2->UBA_like_domain_containing_2,chr17:74261283-74267375:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0543	FALSE	0	0	0	2	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	3	5	EEF2	8885	chr19:3977427:-	RPS28	13645	chr19:8386428:+	INCL_NON_REF_SPLICE	YES	5376	0	0	1	0.0271	0.0452	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0723	FALSE	0	0	0	100	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	1	EIF1	1121	chr17:39845257:+	RPS28	8168	chr19:8386425:+	INCL_NON_REF_SPLICE	YES	786	0	0.01	1	0.0362	0.009	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0452	FALSE	0	0	0	81	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	8723	15414	0	0	0.0362	0.009	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0452	FALSE	183	104	9	328	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-3116E22.6--ZNF274	4	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0362	TRUE	0	0	0	13	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0362	FALSE	499	1288	110	792	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0362	FALSE	462	80	0	856	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0271	0.0362	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.0633	FALSE	515	4851	409	746	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WTAPP1--RUVBL1	4	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0362	TRUE	9	252	6	66	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	3	3	ANP32B	9236	chr9:100774738:+	NCL	18785	chr2:232326311:-	INCL_NON_REF_SPLICE	YES	819	2147	0.01	0	0.0271	0.0271	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0542	FALSE	0	0	0	7	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	3	3	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0.0271	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0542	TRUE	0	1	0	84	1	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRG--UTRN	3	3	PTPRG	2909	chr3:61734656:+	UTRN	72307	chr6:144794856:+	ONLY_REF_SPLICE	YES	19	27	0.24	0.18	0.0271	0.0271	PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,UTRN->chr6:144606837-145174170:+,utrophin	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.24	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBALD2--MT-CO3	3	3	UBALD2	1764	chr17:74262046:+	MT-CO3	7092	chrM:9429:+	INCL_NON_REF_SPLICE	YES	767	12778	0.01	0	0.0271	0.0271	UBALD2->UBA_like_domain_containing_2,chr17:74261283-74267375:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0542	FALSE	0	0	0	2	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBALD2--MT-CO3	3	3	UBALD2	1728	chr17:74262010:+	MT-CO3	7058	chrM:9395:+	INCL_NON_REF_SPLICE	YES	595	11454	0.01	0	0.0271	0.0271	UBALD2->UBA_like_domain_containing_2,chr17:74261283-74267375:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0542	FALSE	0	0	0	2	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	3	2	AC131097.3	2273	chr2:242824786:+	AC093642.5	12811	chr2:243056790:+	ONLY_REF_SPLICE	YES	10	15	0.33	0.25	0.0271	0.0181	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.33	0.0452	FALSE	2	37	1	16	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5314	chrM:6536:+	INCL_NON_REF_SPLICE	YES	11370	15938	0	0	0.0271	0.0181	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0452	FALSE	183	104	9	328	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	3	2	MTAP	18287	chr9:21866841:+	CDKN2B-AS1	40771	chr9:22112319:+	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.0271	0.0181	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.0452	FALSE	0	1	0	2	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAT6--MT-CO3	3	2	STAT6	16494	chr12:57490725:-	MT-CO3	21065	chrM:9243:+	INCL_NON_REF_SPLICE	YES	844	0	0.01	1	0.0271	0.0181	STAT6->Oncogene{Bushman},chr12:57489191-57525922:-,signal_transducer_and_activator_of_transcription_6,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0452	FALSE	0	0	0	1	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBALD2--MT-CO3	3	2	UBALD2	1736	chr17:74262018:+	MT-CO3	7065	chrM:9402:+	INCL_NON_REF_SPLICE	YES	631	11615	0.01	0	0.0271	0.0181	UBALD2->UBA_like_domain_containing_2,chr17:74261283-74267375:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0452	FALSE	0	0	0	2	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC024084.1--AC009784.3	3	1	AC024084.1	2134	chr7:135715781:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0271	0.009	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0361	FALSE	1	6	0	14	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	3	1	IGH@	97649	chr14:106321045:-	TMSB4X	131824	chrX:12993249:+	INCL_NON_REF_SPLICE	YES	8409	0	0	1	0.0271	0.009	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0361	FALSE	0	0	0	6	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	9421	14571	0	0	0.0271	0.009	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0361	FALSE	183	104	9	328	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5226	chrM:6448:+	INCL_NON_REF_SPLICE	YES	9421	15318	0	0	0.0271	0.009	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0361	FALSE	183	104	9	328	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	3	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0.009	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0361	TRUE	160	277	29	98	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0271	0.009	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0361	TRUE	458	1351	185	561	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	3	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	83	0	0.05	1	0.0271	0.009	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0361	FALSE	272	151	14	158	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	0	EIF1	1087	chr17:39845223:+	RPS28	8126	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	0	0	81	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	3	0	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	37	101	7	40	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	3	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	62	24	1	171	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	3	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	0	0	518	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BIRC6--FBXO11	1	7	BIRC6	2641	chr2:32602837:+	FBXO11	89981	chr2:48066908:-	ONLY_REF_SPLICE	YES	22	11	0.27	0.42	0.009	0.0633	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,FBXO11->F-box_protein_11,chr2:48016455-48132932:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.42	0.0723	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	2	2	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0.0181	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0362	FALSE	49	120	16	70	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	1	6	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	7991	chr5:96856933:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.009	0.0543	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0633	FALSE	0	1	1	12	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--SNX5	2	1	DANCR	1530	chr4:53579126:+	SNX5	10453	chr20:17941969:-	ONLY_REF_SPLICE	YES	812	600	0	0	0.0181	0.009	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0271	FALSE	0	0	0	7	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	24436	chr10:114650725:+	ONLY_REF_SPLICE	YES	83	0	0.03	1	0.0181	0.009	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0271	FALSE	21	3	0	16	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	2	0	AC131097.3	2273	chr2:242824786:+	AC093642.5	21108	chr2:243101495:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	FALSE	0	0	0	1	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--CTCF	2	0	DANCR	1530	chr4:53579126:+	CTCF	8612	chr16:67605051:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--ZADH2	2	0	DANCR	1530	chr4:53579126:+	ZADH2	10603	chr18:72914295:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXO11--BIRC6	2	0	FBXO11	1305	chr2:48132628:-	BIRC6	53795	chr2:32688262:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	FBXO11->F-box_protein_11,chr2:48016455-48132932:-,BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--FAF2	2	0	IGLL5	1480	chr22:23230439:+	FAF2	10743	chr5:175906189:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,FAF2->Fas_associated_factor_family_member_2,chr5:175874629-175937075:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INVS--ERP44	2	0	INVS	5175	chr9:102888831:+	ERP44	31082	chr9:102822454:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[216],INVS->chr9:102861538-103063282:+,inversin,ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	3	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KAT6A--PLEKHA5	2	0	KAT6A	1090	chr8:41909419:-	PLEKHA5	34563	chr12:19285327:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A,PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KAT6A--RP11-282K24.1	2	0	KAT6A	3420	chr8:41905896:-	RP11-282K24.1	32491	chr12:19242077:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A,RP11-282K24.1->chr12:19241974-19242825:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	2	0	KCNQ5-IT1	2238	chr6:73350602:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	FALSE	0	0	0	1	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00478--USP25	2	0	LINC00478	17426	chr21:17979407:+	USP25	50353	chr21:17238585:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LINC00478->chr21:17442842-17999716:+,USP25->chr21:17102344-17252377:+,ubiquitin_specific_peptidase_25	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MCTP1--CTD-2410N18.5	2	0	MCTP1	5265	chr5:94417130:-	CTD-2410N18.5	46345	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	MCTP1->chr5:94039446-94620279:-,multiple_C2_and_transmembrane_domain_containing_1,CTD-2410N18.5->chr5:133502861-133561762:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	274	363	69	150	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	2	0	STX18-AS1	2665	chr4:4546634:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	3	17	0	6	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMSB4X--TLR8	2	0	TMSB4X	1061	chrX:12993287:+	TLR8	8348	chrX:12937163:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_REARRANGEMENT:+:[51939],TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked,TLR8->chrX:12924739-12941288:+,toll_like_receptor_8	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSC1--PRRC2B	1	4	TSC1	9188	chr9:135797206:-	PRRC2B	41813	chr9:134334551:+	ONLY_REF_SPLICE	YES	24	185	0.17	0.03	0.009	0.0362	TSC1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:135766735-135820020:-,tuberous_sclerosis_1,PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.17	0.0452	TRUE	0	0	0	1	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--CCT4	2	0	USP34	1120	chr2:61697785:-	CCT4	79292	chr2:62110683:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Sarcomatoid=1,Skin=1,Kidney=1,Lymphoid=1},USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CCT4->chaperonin_containing_TCP1_subunit_4,chr2:62095224-62115939:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	2	0	TRUE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--CRK	2	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	6	50	7	115	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC024084.1--AC009784.3	1	2	AC024084.1	3174	chr7:135743253:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	NO	2	14	0.6	0.18	0.009	0.0181	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.6	0.0271	FALSE	0	2	0	6	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	1	2	MTAP	12211	chr9:21859424:+	CDKN2B-AS1	40771	chr9:22112319:+	ONLY_REF_SPLICE	YES	108	0	0.03	1	0.009	0.0181	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0271	FALSE	0	5	0	4	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC024084.1--AC009784.3	1	1	AC024084.1	2134	chr7:135715781:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	NO	1	14	0.67	0.12	0.009	0.009	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.67	0.018	FALSE	0	3	0	12	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATXN1--RP1-151F17.1	1	1	ATXN1	1194	chr6:16761529:-	RP1-151F17.1	34609	chr6:16762583:+	ONLY_REF_SPLICE	YES	118	17	0.02	0.11	0.009	0.009	NEIGHBORS_OVERLAP:-:+:[353],ATXN1->ataxin_1,chr6:16299343-16761722:-,RP1-151F17.1->chr6:16761369-16762883:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.11	0.018	FALSE	0	2	1	2	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT2--IRF2BP2	1	1	CNOT2	11745	chr12:70704797:+	IRF2BP2	36923	chr1:234743598:-	ONLY_REF_SPLICE	YES	242	417	0.01	0	0.009	0.009	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.018	FALSE	0	0	0	2	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM13B--ZNF608	1	1	FAM13B	4417	chr5:137368471:-	ZNF608	39743	chr5:123985390:-	ONLY_REF_SPLICE	YES	31	29	0.06	0.06	0.009	0.009	FAM13B->chr5:137273649-137387650:-,family_with_sequence_similarity_13_member_B,ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.06	0.018	TRUE	0	0	0	1	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM69A--RPL5	1	1	FAM69A	2260	chr1:93341853:-	RPL5	16908	chr1:93306108:+	ONLY_REF_SPLICE	NO	30	2417	0.06	0	0.009	0.009	GTEx_v2:{count=1;pct=0.01%;dist=Uterus=1},LOCAL_INVERSION:-:+:[243],FAM69A->chr1:93307724-93427057:-,family_with_sequence_similarity_69_member_A,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ILF2--PCBP2	1	1	ILF2	2213	chr1:153642312:-	PCBP2	20085	chr12:53853056:+	ONLY_REF_SPLICE	NO	776	2055	0	0	0.009	0.009	ILF2->chr1:153634512-153643524:-,interleukin_enhancer_binding_factor_2,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	1	1	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	13	1	0.13	0.009	0.009	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.018	FALSE	1	11	0	34	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MANBA--UBE2D3	1	1	MANBA	1277	chr4:103681875:-	UBE2D3	38146	chr4:103723795:-	ONLY_REF_SPLICE	NO	17	615	0.11	0	0.009	0.009	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.11	0.018	FALSE	2	0	0	2	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	1	1	NOC4L	5448	chr12:132633440:+	FBRSL1	13619	chr12:133083838:+	ONLY_REF_SPLICE	YES	110	5	0.02	0.29	0.009	0.009	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.29	0.018	TRUE	1	0	0	1	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFC3--IRF2BP2	1	1	RFC3	7040	chr13:34405491:+	IRF2BP2	16535	chr1:234743598:-	ONLY_REF_SPLICE	YES	61	417	0.03	0	0.009	0.009	RFC3->chr13:34392186-34540695:+,replication_factor_C_subunit_3,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	19	1	0.1	0.009	0.009	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.018	TRUE	465	1949	224	605	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SENP6--STXBP5-AS1	1	1	SENP6	4031	chr6:76331341:+	STXBP5-AS1	58610	chr6:147165848:-	ONLY_REF_SPLICE	YES	42	86	0.05	0.02	0.009	0.009	SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.018	TRUE	0	0	0	1	0	FALSE	ACH-000068
REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCEB2--SNHG17	1	1	TCEB2	1305	chr16:2826994:-	SNHG17	9020	chr20:37059755:-	ONLY_REF_SPLICE	NO	962	720	0	0	0.009	0.009	TCEB2->chr16:2821415-2827298:-,transcription_elongation_factor_B_subunit_2,SNHG17->chr20:37049235-37063996:-,small_nucleolar_RNA_host_gene_17	REC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000068
HUH6_LIVER	MT-TA--MT-TN	148	1	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.7886	0.0121	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH6_LIVER	1	1	1.8007	FALSE	369	2501	205	193	0	FALSE	ACH-000671
HUH6_LIVER	TIMM23B--LINC00843	78	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9426	0.145	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HUH6_LIVER	1	1	1.0876	TRUE	508	994	45	981	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND6--MT-TE	74	11	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.8943	0.1329	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH6_LIVER	0.99	1	1.0272	FALSE	499	1288	110	792	0	FALSE	ACH-000671
HUH6_LIVER	MT-TA--MT-TC	66	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7976	0.0242	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUH6_LIVER	1	1	0.8218	FALSE	462	80	0	856	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	6	231	MT-ND4	2279	chrM:12038:+	MT-ND4L	5519	chrM:10610:+	INCL_NON_REF_SPLICE	YES	155	0	0.6	1	0.0725	2.7916	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.6	1	2.8641	FALSE	288	732	40	297	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	3	232	MT-ND4	2281	chrM:12040:+	MT-ND4L	5383	chrM:10474:+	INCL_NON_REF_SPLICE	YES	113	0	0.68	1	0.0363	2.8037	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.68	1	2.84	FALSE	284	710	36	297	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	3	229	MT-ND4	1967	chrM:11726:+	MT-ND4L	5384	chrM:10475:+	INCL_NON_REF_SPLICE	YES	24072	0	0.01	1	0.0363	2.7674	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.01	1	2.8037	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	6	216	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	50	0	0.82	1	0.0725	2.6103	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.82	1	2.6828	FALSE	344	826	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	6	215	MT-ND4	1220	chrM:10979:+	MT-ND4L	5536	chrM:10627:+	INCL_NON_REF_SPLICE	YES	104	0	0.68	1	0.0725	2.5982	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.68	1	2.6707	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	4	221	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	104	0	0.68	1	0.0483	2.6707	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.68	1	2.719	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	3	221	MT-ND4	1285	chrM:11044:+	MT-ND4L	5512	chrM:10603:+	INCL_NON_REF_SPLICE	YES	186	0	0.55	1	0.0363	2.6707	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.55	1	2.707	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	3	220	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	85	0	0.72	1	0.0363	2.6587	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.72	1	2.695	FALSE	344	826	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	3	215	MT-ND4	1284	chrM:11043:+	MT-ND4L	5537	chrM:10628:+	INCL_NON_REF_SPLICE	YES	184	0	0.54	1	0.0363	2.5982	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.54	1	2.6345	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	16	163	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	21	0	0.9	1	0.1934	1.9698	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.9	1	2.1632	FALSE	344	821	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	3	214	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	NO	82	0	0.73	1	0.0363	2.5862	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.73	1	2.6225	FALSE	344	826	44	306	0	FALSE	ACH-000671
HUH6_LIVER	TIMM23--RP11-464F9.1	51	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	266	3	0.17	0.95	0.6163	0.0483	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HUH6_LIVER	0.17	0.95	0.6646	TRUE	519	3926	326	965	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	12	151	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	12051	1	0.01	0.99	0.145	1.8248	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.01	0.99	1.9698	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-TA--MT-TN	22	97	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2659	1.1722	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH6_LIVER	1	1	1.4381	FALSE	369	2501	205	193	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	45	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5438	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	1	1	0.5438	FALSE	230	193	14	283	0	FALSE	ACH-000671
HUH6_LIVER	CKB--hsa-mir-6723	39	7	CKB	4320	chr14:103986129:-	hsa-mir-6723	7451	chr1:566451:+	INCL_NON_REF_SPLICE	YES	538	0	0.08	1	0.4713	0.0846	CKB->chr14:103985996-103989448:-,creatine_kinase_B,hsa-mir-6723->chr1:566454-567996:+	HUH6_LIVER	0.08	1	0.5559	TRUE	0	0	1	1	0	TRUE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	5	143	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	234	2	0.39	0.99	0.0604	1.7281	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.39	0.99	1.7885	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	FN1--AC012668.1	35	8	FN1	35400	chr2:216245534:-	AC012668.1	58259	chr2:216396303:-	ONLY_REF_SPLICE	YES	5364	0	0.01	1	0.423	0.0967	LOCAL_REARRANGEMENT:-:[94275],FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,AC012668.1->chr2:216395170-216410249:-	HUH6_LIVER	0.01	1	0.5197	TRUE	0	0	0	1	0	FALSE	ACH-000671
HUH6_LIVER	ZNF654--HMGB2	34	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4109	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HUH6_LIVER	1	1	0.4109	TRUE	0	0	0	518	0	FALSE	ACH-000671
HUH6_LIVER	MT-TA--MT-TN	15	71	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1813	0.858	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH6_LIVER	1	1	1.0393	FALSE	369	2501	205	193	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND6--MT-TE	26	22	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.3142	0.2659	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH6_LIVER	0.92	1	0.5801	FALSE	499	1288	110	792	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	17	46	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	19178	2	0	0.97	0.2054	0.5559	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0	0.97	0.7613	FALSE	328	800	43	304	0	FALSE	ACH-000671
HUH6_LIVER	MT-TA--MT-TN	20	34	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2417	0.4109	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH6_LIVER	1	1	0.6526	FALSE	369	2501	205	193	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	28	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3384	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	1	1	0.3384	FALSE	230	198	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND6--MT-TE	23	11	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.278	0.1329	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH6_LIVER	0.94	1	0.4109	FALSE	499	1288	110	792	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	18	30	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	15363	1	0	0.98	0.2175	0.3625	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0	0.98	0.58	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	21	10	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	25666	10	0	0.76	0.2538	0.1208	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.76	0.3746	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND6--MT-TE	13	40	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.93	1	0.1571	0.4834	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH6_LIVER	0.93	1	0.6405	FALSE	499	1288	110	792	0	FALSE	ACH-000671
HUH6_LIVER	KRT8--SPRYD3	20	6	KRT8	10265	chr12:53294372:-	SPRYD3	24915	chr12:53460476:-	ONLY_REF_SPLICE	YES	7193	14	0	0.65	0.2417	0.0725	KRT8->chr12:53290977-53343738:-,keratin_8,SPRYD3->SPRY_domain_containing_3,chr12:53458388-53473204:-	HUH6_LIVER	0	0.65	0.3142	TRUE	0	0	0	1	0	FALSE	ACH-000671
HUH6_LIVER	NPM1P24--SET	21	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2538	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HUH6_LIVER	1	1	0.2538	TRUE	0	0	0	434	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	3	67	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	21	2	0.77	0.97	0.0363	0.8097	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.77	0.97	0.846	FALSE	344	821	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-TA--MT-TN	11	34	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1329	0.4109	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH6_LIVER	1	1	0.5438	FALSE	369	2501	205	193	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	8	45	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	2005	2	0.03	0.96	0.0967	0.5438	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.03	0.96	0.6405	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	12	29	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1324	1	0.03	0.98	0.145	0.3505	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.03	0.98	0.4955	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	RP11-680G10.1--GSE1	17	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	19	1	0.56	0.2054	0.0846	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HUH6_LIVER	0.56	1	0.29	TRUE	458	1351	185	561	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	14	17	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	25196	0	0	1	0.1692	0.2054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.3746	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-TA--MT-TN	6	45	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0725	0.5438	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH6_LIVER	1	1	0.6163	FALSE	369	2501	205	193	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	14	10	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	24750	127	0	0.16	0.1692	0.1208	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.16	0.29	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	6	42	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	75	2	0.39	0.96	0.0725	0.5076	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.39	0.96	0.5801	FALSE	344	826	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	9	28	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	100	1	0.27	0.97	0.1088	0.3384	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.27	0.97	0.4472	FALSE	344	826	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	4	46	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	11271	2	0	0.96	0.0483	0.5559	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0	0.96	0.6042	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	4	44	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	196	2	0.2	0.96	0.0483	0.5317	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.2	0.96	0.58	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-TA--MT-TC	14	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1692	0.0242	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUH6_LIVER	1	1	0.1934	FALSE	462	80	0	856	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	13	4	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	27433	0	0	1	0.1571	0.0483	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.2054	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	8	23	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0967	0.278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0.97	1	0.3747	FALSE	209	205	15	279	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	9	19	MT-ND4	2283	chrM:12042:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	44	127	0.39	0.18	0.1088	0.2296	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0.18	0.39	0.3384	FALSE	213	207	15	279	0	FALSE	ACH-000671
HUH6_LIVER	MT-TA--MT-TN	13	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1571	0.0121	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH6_LIVER	1	1	0.1692	FALSE	369	2501	205	193	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND1--MT-TL1	4	35	MT-ND1	1094	chrM:3400:+	MT-TL1	4988	chrM:3261:+	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.0483	0.423	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	HUH6_LIVER	0.91	1	0.4713	FALSE	210	95	5	49	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	9	15	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22972	127	0	0.16	0.1088	0.1813	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.16	0.2901	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	8	18	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7308	127	0	0.17	0.0967	0.2175	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.17	0.3142	FALSE	218	210	16	281	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	5	30	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	11795	1	0	0.97	0.0604	0.3625	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0	0.97	0.4229	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	5	30	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	21382	1	0	0.97	0.0604	0.3625	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0	0.97	0.4229	FALSE	343	822	44	305	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	5	30	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	11271	1	0	0.97	0.0604	0.3625	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0	0.97	0.4229	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	4	33	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	17	2	0.69	0.95	0.0483	0.3988	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.69	0.95	0.4471	FALSE	344	821	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	10	9	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	196	0	0.09	1	0.1208	0.1088	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.09	1	0.2296	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	SCARB1--UBC	11	5	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	679	63	0.02	0.2	0.1329	0.0604	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	HUH6_LIVER	0.02	0.2	0.1933	TRUE	55	66	6	101	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	7	19	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3585	127	0.01	0.17	0.0846	0.2296	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0.01	0.17	0.3142	FALSE	216	209	16	281	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	8	15	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	22972	295	0	0.07	0.0967	0.1813	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.07	0.278	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	AAGAB--RP11-798K3.2	11	1	AAGAB	6028	chr15:67524152:-	RP11-798K3.2	21867	chr15:67279600:-	ONLY_REF_SPLICE	YES	83	2	0.13	0.86	0.1329	0.0121	AAGAB->alpha-_and_gamma-adaptin_binding_protein,chr15:67493371-67547533:-,RP11-798K3.2->chr15:67278699-67351591:-	HUH6_LIVER	0.13	0.86	0.145	TRUE	0	2	0	1	2	TRUE	ACH-000671
HUH6_LIVER	HSPBP1--GRK5	11	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1329	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HUH6_LIVER	1	1	0.1329	TRUE	1	39	0	134	39	FALSE	ACH-000671
HUH6_LIVER	MT-TL1--MT-RNR2	11	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1329	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HUH6_LIVER	1	1	0.1329	FALSE	7	521	16	32	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	8	11	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	25519	0	0	1	0.0967	0.1329	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.2296	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	9	7	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	26778	1	0	0.94	0.1088	0.0846	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.94	0.1934	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND6--MT-TE	5	23	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0604	0.278	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH6_LIVER	0.9	1	0.3384	FALSE	499	1288	110	792	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	5	22	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	7995	0	0	1	0.0604	0.2659	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.3263	FALSE	222	212	16	282	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	3	30	MT-ND4	1885	chrM:11644:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	22736	1	0	0.97	0.0363	0.3625	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0	0.97	0.3988	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-TR--MT-ND3	3	30	MT-TR	1040	chrM:10444:+	MT-ND3	4225	chrM:10218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0.3625	LOCAL_REARRANGEMENT:+:[1],MT-TR->chrM:10405-10469:+,mitochondrially_encoded_tRNA_arginine,MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3	HUH6_LIVER	1	1	0.3988	FALSE	0	2	0	3	0	FALSE	ACH-000671
HUH6_LIVER	MTATP6P1--hsa-mir-6723	9	6	MTATP6P1	1158	chr1:569233:+	hsa-mir-6723	5324	chr1:567096:+	INCL_NON_REF_SPLICE	YES	2513	2039	0.01	0.01	0.1088	0.0725	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HUH6_LIVER	0.01	0.01	0.1813	TRUE	2	7	0	3	0	FALSE	ACH-000671
HUH6_LIVER	MT-ATP8--MT-ND2	10	0	MT-ATP8	1063	chrM:8428:+	MT-ND2	5033	chrM:5295:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1208	0	LOCAL_REARRANGEMENT:+:[2855],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUH6_LIVER	1	1	0.1208	FALSE	26	2	1	4	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	10	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1208	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	1	1	0.1208	FALSE	231	205	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND6--MT-TE	10	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1208	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH6_LIVER	1	1	0.1208	FALSE	499	1288	110	792	0	FALSE	ACH-000671
HUH6_LIVER	MT-TA--MT-TC	9	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1088	0.0483	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUH6_LIVER	1	1	0.1571	FALSE	462	80	0	856	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	7	11	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	25299	0	0	1	0.0846	0.1329	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.2175	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	RP11-680G10.1--GSE1	9	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	61	1	0.16	0.1088	0.0363	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HUH6_LIVER	0.16	1	0.1451	TRUE	465	1949	224	605	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	3	26	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	62	1	0.32	0.97	0.0363	0.3142	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.32	0.97	0.3505	FALSE	344	826	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND6--MT-TE	3	26	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0363	0.3142	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH6_LIVER	0.94	1	0.3505	FALSE	499	1288	110	792	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND6--MT-TE	4	22	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0.2659	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH6_LIVER	1	1	0.3142	FALSE	499	1288	110	792	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	9	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1088	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	1	1	0.1088	FALSE	230	198	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	7	7	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	26778	0	0	1	0.0846	0.0846	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.1692	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	8	2	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	24879	0	0	1	0.0967	0.0242	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.1209	FALSE	231	205	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND6--MT-TE	3	22	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.0363	0.2659	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH6_LIVER	0.86	1	0.3022	FALSE	499	1288	110	792	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	21	MT-ND4	2157	chrM:11916:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	13293	0	0	1	0.0363	0.2538	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.2901	FALSE	231	215	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	21	MT-ND4	2298	chrM:12057:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	8	0	0.75	1	0.0363	0.2538	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0.75	1	0.2901	FALSE	213	207	15	279	0	FALSE	ACH-000671
HUH6_LIVER	CKB--hsa-mir-6723	6	8	CKB	4334	chr14:103986115:-	hsa-mir-6723	7465	chr1:566465:+	INCL_NON_REF_SPLICE	YES	312	0	0.04	1	0.0725	0.0967	CKB->chr14:103985996-103989448:-,creatine_kinase_B,hsa-mir-6723->chr1:566454-567996:+	HUH6_LIVER	0.04	1	0.1692	TRUE	0	0	1	1	0	TRUE	ACH-000671
HUH6_LIVER	MT-ND1--MT-TL1	3	20	MT-ND1	1342	chrM:3648:+	MT-TL1	5013	chrM:3286:+	INCL_NON_REF_SPLICE	YES	38	0	0.38	1	0.0363	0.2417	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	HUH6_LIVER	0.38	1	0.278	FALSE	210	95	5	49	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	6	8	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	28199	127	0	0.1	0.0725	0.0967	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.1	0.1692	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-TA--MT-TN	8	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0967	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH6_LIVER	1	1	0.0967	FALSE	369	2501	205	193	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	19	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1	10	0.96	0.69	0.0363	0.2296	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0.69	0.96	0.2659	FALSE	209	205	15	279	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	4	15	MT-ND4	1998	chrM:11757:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	23769	10	0	0.66	0.0483	0.1813	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.66	0.2296	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	19	MT-ND4	2281	chrM:12040:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	113	176	0.16	0.11	0.0363	0.2296	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0.11	0.16	0.2659	FALSE	213	207	15	279	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	6	7	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	28817	914	0	0.01	0.0725	0.0846	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.01	0.1571	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	18	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	23830	0	0	1	0.0363	0.2175	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.2538	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MTATP6P1--hsa-mir-6723	7	2	MTATP6P1	1123	chr1:569198:+	hsa-mir-6723	5324	chr1:567096:+	INCL_NON_REF_SPLICE	YES	1295	2039	0.01	0	0.0846	0.0242	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HUH6_LIVER	0	0.01	0.1088	TRUE	2	7	0	3	0	FALSE	ACH-000671
HUH6_LIVER	RP11-120D5.1--MID1	7	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	31	0.9	0.23	0.0846	0.0242	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HUH6_LIVER	0.23	0.9	0.1088	FALSE	16	356	14	466	0	FALSE	ACH-000671
HUH6_LIVER	RP11-96H19.1--RP11-446N19.1	7	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0846	0.0121	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUH6_LIVER	1	1	0.0967	FALSE	515	4851	409	746	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	7	0	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0846	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	1	1	0.0846	FALSE	230	193	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	5	8	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	YES	25666	1024	0	0.01	0.0604	0.0967	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.01	0.1571	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	7	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0846	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	1	1	0.0846	FALSE	344	821	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND6--MT-TE	7	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0846	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH6_LIVER	1	1	0.0846	FALSE	499	1288	110	792	0	FALSE	ACH-000671
HUH6_LIVER	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0846	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUH6_LIVER	1	1	0.0846	FALSE	462	80	0	856	0	FALSE	ACH-000671
HUH6_LIVER	MT-TA--MT-TN	7	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0846	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH6_LIVER	1	1	0.0846	FALSE	369	2501	205	193	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND1--MT-TL1	3	15	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	13	0	0.58	1	0.0363	0.1813	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	HUH6_LIVER	0.58	1	0.2176	FALSE	210	95	5	49	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	15	MT-ND4	1903	chrM:11662:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	NO	25168	0	0	1	0.0363	0.1813	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.2176	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	15	MT-ND4	1968	chrM:11727:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	24062	127	0	0.12	0.0363	0.1813	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.12	0.2176	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	15	MT-ND4	2098	chrM:11857:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	18014	657	0	0.03	0.0363	0.1813	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.03	0.2176	FALSE	231	215	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	5	7	MT-ND4	1494	chrM:11253:+	MT-ATP8	5431	chrM:8418:+	INCL_NON_REF_SPLICE	YES	26758	0	0	1	0.0604	0.0846	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.145	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND6--MT-TE	3	14	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0363	0.1692	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH6_LIVER	0.89	1	0.2055	FALSE	499	1288	110	792	0	FALSE	ACH-000671
HUH6_LIVER	MTATP6P1--hsa-mir-6723	3	14	MTATP6P1	1413	chr1:569488:+	hsa-mir-6723	5362	chr1:567134:+	INCL_NON_REF_SPLICE	YES	2749	1854	0.01	0.01	0.0363	0.1692	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HUH6_LIVER	0.01	0.01	0.2055	TRUE	2	7	0	3	0	FALSE	ACH-000671
HUH6_LIVER	MTATP6P1--hsa-mir-6723	6	2	MTATP6P1	1117	chr1:569192:+	hsa-mir-6723	5321	chr1:567093:+	INCL_NON_REF_SPLICE	YES	1143	2042	0.01	0	0.0725	0.0242	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HUH6_LIVER	0	0.01	0.0967	FALSE	2	7	0	3	0	FALSE	ACH-000671
HUH6_LIVER	AAGAB--RP11-798K3.2	6	1	AAGAB	6028	chr15:67524152:-	RP11-798K3.2	21482	chr15:67279985:-	ONLY_REF_SPLICE	YES	83	0	0.08	1	0.0725	0.0121	AAGAB->alpha-_and_gamma-adaptin_binding_protein,chr15:67493371-67547533:-,RP11-798K3.2->chr15:67278699-67351591:-	HUH6_LIVER	0.08	1	0.0846	TRUE	0	2	0	1	2	TRUE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	6	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0725	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	1	1	0.0725	FALSE	230	193	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	4	8	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	NO	25600	1097	0	0.01	0.0483	0.0967	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.01	0.145	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	6	0	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0725	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	1	1	0.0725	FALSE	230	197	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0725	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH6_LIVER	1	1	0.0725	FALSE	499	1288	110	792	0	FALSE	ACH-000671
HUH6_LIVER	MTATP6P1--hsa-mir-6723	6	0	MTATP6P1	1126	chr1:569201:+	hsa-mir-6723	5622	chr1:567394:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0725	0	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HUH6_LIVER	1	1	0.0725	TRUE	2	7	0	3	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	11	MT-ND4	1828	chrM:11587:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	24750	0	0	1	0.0363	0.1329	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.1692	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	4	7	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	26505	0	0	1	0.0483	0.0846	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.1329	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MTATP6P1--hsa-mir-6723	3	11	MTATP6P1	1275	chr1:569350:+	hsa-mir-6723	5370	chr1:567142:+	INCL_NON_REF_SPLICE	YES	1681	1676	0.01	0.01	0.0363	0.1329	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HUH6_LIVER	0.01	0.01	0.1692	TRUE	2	7	0	3	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	5	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	24895	127	0	0.05	0.0604	0.0242	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.05	0.0846	FALSE	231	205	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	10	MT-ND4	1779	chrM:11538:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	25557	127	0	0.09	0.0363	0.1208	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.09	0.1571	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MTATP6P1--hsa-mir-6723	5	2	MTATP6P1	1121	chr1:569196:+	hsa-mir-6723	4698	chr1:566470:+	INCL_NON_REF_SPLICE	YES	1240	0	0.01	1	0.0604	0.0242	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HUH6_LIVER	0.01	1	0.0846	FALSE	1	3	0	3	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND1--MT-TL1	3	9	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.0363	0.1088	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	HUH6_LIVER	0.86	1	0.1451	FALSE	210	95	5	49	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	3	9	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	196	0	0.06	1	0.0363	0.1088	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.06	1	0.1451	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	3	9	MT-ND4	1338	chrM:11097:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	316	0	0.04	1	0.0363	0.1088	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.04	1	0.1451	FALSE	344	827	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	3	9	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	83	0	0.13	1	0.0363	0.1088	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.13	1	0.1451	FALSE	344	826	44	306	0	FALSE	ACH-000671
HUH6_LIVER	AC104389.28--HBE1	5	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0604	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HUH6_LIVER	1	1	0.0604	TRUE	0	16	0	53	13	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	5	0	MT-ND4	1010	chrM:10769:+	MT-ATP8	5509	chrM:8496:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	1	1	0.0604	FALSE	230	190	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	8	MT-ND4	1533	chrM:11292:+	MT-ATP8	5479	chrM:8466:+	INCL_NON_REF_SPLICE	YES	29408	5	0	0.69	0.0363	0.0967	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.69	0.133	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	8	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	29143	295	0	0.04	0.0363	0.0967	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.04	0.133	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	5	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	1	1	0.0604	FALSE	230	193	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	5	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	1	1	0.0604	FALSE	344	821	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	5	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	1	1	0.0604	FALSE	344	821	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH6_LIVER	1	1	0.0604	FALSE	499	1288	110	792	0	FALSE	ACH-000671
HUH6_LIVER	MT-TL1--MT-RNR2	3	8	MT-TL1	1104	chrM:3333:+	MT-RNR2	5603	chrM:3198:+	INCL_NON_REF_SPLICE	NO	0	1	1	0.92	0.0363	0.0967	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HUH6_LIVER	0.92	1	0.133	FALSE	7	521	16	32	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	7	MT-ND4	1459	chrM:11218:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	27525	10	0	0.5	0.0363	0.0846	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.5	0.1209	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	7	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	25440	1693	0	0.01	0.0363	0.0846	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.01	0.1209	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	7	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	26746	0	0	1	0.0363	0.0846	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.1209	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	6	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	27457	5	0	0.64	0.0363	0.0725	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.64	0.1088	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	4	2	MT-ND4	1285	chrM:11044:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	23277	5	0	0.55	0.0483	0.0242	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.55	0.0725	FALSE	231	205	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	6	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	27346	0	0	1	0.0363	0.0725	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.1088	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	6	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	24840	2016	0	0	0.0363	0.0725	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0	0.1088	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MTATP6P1--hsa-mir-6723	3	6	MTATP6P1	1153	chr1:569228:+	hsa-mir-6723	4732	chr1:566504:+	INCL_NON_REF_SPLICE	YES	2482	0	0	1	0.0363	0.0725	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HUH6_LIVER	0	1	0.1088	TRUE	1	3	0	3	0	FALSE	ACH-000671
HUH6_LIVER	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0483	0.0242	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUH6_LIVER	1	1	0.0725	FALSE	467	2173	244	435	0	FALSE	ACH-000671
HUH6_LIVER	ARF1--hsa-mir-6723	4	1	ARF1	6843	chr1:228285395:+	hsa-mir-6723	11358	chr1:566451:+	INCL_NON_REF_SPLICE	YES	1351	0	0	1	0.0483	0.0121	ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+,hsa-mir-6723->chr1:566454-567996:+	HUH6_LIVER	0	1	0.0604	FALSE	0	0	0	1	0	FALSE	ACH-000671
HUH6_LIVER	MTATP6P1--hsa-mir-6723	3	5	MTATP6P1	1141	chr1:569216:+	hsa-mir-6723	4697	chr1:566469:+	INCL_NON_REF_SPLICE	YES	2090	0	0	1	0.0363	0.0604	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HUH6_LIVER	0	1	0.0967	FALSE	1	3	0	3	0	FALSE	ACH-000671
HUH6_LIVER	MYL6--GNAS	4	1	MYL6	2462	chr12:56553406:+	GNAS	30767	chr20:57478586:+	ONLY_REF_SPLICE	YES	53	1852	0.09	0	0.0483	0.0121	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HUH6_LIVER	0	0.09	0.0604	FALSE	0	0	0	1	0	FALSE	ACH-000671
HUH6_LIVER	GPC3--MT-CO3	4	0	GPC3	1547	chrX:133119376:-	MT-CO3	14932	chrM:9427:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	GPC3->Oncogene{Bushman},chrX:132669773-133119922:-,glypican_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HUH6_LIVER	1	1	0.0483	FALSE	0	0	0	1	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	4	0	MT-ND4	1164	chrM:10923:+	MT-ATP8	5455	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	1	1	0.0483	FALSE	230	193	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	4	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	1	1	0.0483	FALSE	231	204	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	4	0	MT-ND4	1031	chrM:10790:+	MT-ATP8	5472	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	1	1	0.0483	FALSE	230	191	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	4	0	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	1	1	0.0483	FALSE	230	191	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	4	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	27365	0	0	1	0.0363	0.0483	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.0846	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	4	0	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	1	1	0.0483	FALSE	230	193	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	4	MT-ND4	1437	chrM:11196:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	27396	5	0	0.58	0.0363	0.0483	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	0.58	0.0846	FALSE	231	217	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	4	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	26450	0	0	1	0.0363	0.0483	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.0846	FALSE	231	216	16	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	4	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	1	1	0.0483	FALSE	231	205	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	3	4	MT-ND4	1031	chrM:10790:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	7	1	0.5	0.88	0.0363	0.0483	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	0.5	0.88	0.0846	FALSE	344	821	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	4	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	1	1	0.0483	FALSE	344	821	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MTATP6P1--hsa-mir-6723	4	0	MTATP6P1	1098	chr1:569173:+	hsa-mir-6723	5381	chr1:567153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HUH6_LIVER	1	1	0.0483	TRUE	2	7	0	3	0	FALSE	ACH-000671
HUH6_LIVER	RP11-123O10.4--GRIP1	4	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0483	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HUH6_LIVER	1	1	0.0483	FALSE	416	2512	207	587	0	FALSE	ACH-000671
HUH6_LIVER	RP11-475O23.3--GDI2	4	0	RP11-475O23.3	2988	chr3:58618387:+	GDI2	14105	chr10:5836982:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0483	0	RP11-475O23.3->chr3:58592807-58620167:+,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	HUH6_LIVER	1	1	0.0483	TRUE	0	1	0	1	1	TRUE	ACH-000671
HUH6_LIVER	RPLP1--MT-CO3	4	0	RPLP1	1200	chr15:69745322:+	MT-CO3	7193	chrM:9266:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HUH6_LIVER	1	1	0.0483	FALSE	0	0	0	1	0	FALSE	ACH-000671
HUH6_LIVER	CACNG8--ZNF331	3	2	CACNG8	1386	chr19:54466679:+	ZNF331	26894	chr19:54072558:+	ONLY_REF_SPLICE	YES	0	205	1	0.02	0.0363	0.0242	CACNG8->calcium_voltage-gated_channel_auxiliary_subunit_gamma_8,chr19:54466294-54493469:+,ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331	HUH6_LIVER	0.02	1	0.0605	TRUE	0	0	0	1	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	2	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	24844	0	0	1	0.0363	0.0242	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	0	1	0.0605	FALSE	231	205	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MTATP6P1--hsa-mir-6723	3	2	MTATP6P1	1128	chr1:569203:+	hsa-mir-6723	5329	chr1:567101:+	INCL_NON_REF_SPLICE	YES	1520	2024	0	0	0.0363	0.0242	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HUH6_LIVER	0	0	0.0605	FALSE	2	7	0	3	0	FALSE	ACH-000671
HUH6_LIVER	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0.0242	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUH6_LIVER	1	1	0.0605	FALSE	407	2205	196	549	0	FALSE	ACH-000671
HUH6_LIVER	AL136376.1--RPS28	3	1	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0.0121	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HUH6_LIVER	1	1	0.0484	TRUE	0	0	0	12	0	TRUE	ACH-000671
HUH6_LIVER	MTATP6P1--hsa-mir-6723	3	1	MTATP6P1	1108	chr1:569183:+	hsa-mir-6723	5324	chr1:567096:+	INCL_NON_REF_SPLICE	YES	943	2039	0	0	0.0363	0.0121	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HUH6_LIVER	0	0	0.0484	FALSE	2	7	0	3	0	FALSE	ACH-000671
HUH6_LIVER	C14orf105--PTPN2	3	0	C14orf105	8353	chr14:57942300:-	PTPN2	18713	chr18:12859253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=16;pct=0.18%;dist=Thyroid=2,Adipose_-_Subcutaneous=2,Brain_-_Putamen_(basal_ganglia)=1,Stomach=1,Artery_-_Coronary=1,Liver=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Brain_-_Cerebellar_Hemisphere=1,Spleen=1},C14orf105->chr14:57936019-57960585:-,chromosome_14_open_reading_frame_105,PTPN2->chr18:12785477-12929642:-,protein_tyrosine_phosphatase,_non-receptor_type_2	HUH6_LIVER	1	1	0.0363	TRUE	5	20	0	2	0	FALSE	ACH-000671
HUH6_LIVER	MT-ATP8--MT-ND2	3	0	MT-ATP8	1070	chrM:8435:+	MT-ND2	4956	chrM:5218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:+:[2855],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUH6_LIVER	1	1	0.0363	FALSE	26	2	1	4	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND1--MT-TL1	3	0	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	HUH6_LIVER	1	1	0.0363	FALSE	210	95	5	49	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND1--MT-TL1	3	0	MT-ND1	1053	chrM:3359:+	MT-TL1	5016	chrM:3289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	HUH6_LIVER	1	1	0.0363	FALSE	210	95	5	49	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ATP8	3	0	MT-ND4	1116	chrM:10875:+	MT-ATP8	5453	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH6_LIVER	1	1	0.0363	FALSE	230	193	14	283	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	1	1	0.0363	FALSE	344	821	44	306	0	FALSE	ACH-000671
HUH6_LIVER	MT-ND4--MT-ND4L	3	0	MT-ND4	1015	chrM:10774:+	MT-ND4L	5613	chrM:10704:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUH6_LIVER	1	1	0.0363	FALSE	344	821	44	306	0	FALSE	ACH-000671
HUH6_LIVER	SAMD5--SASH1	3	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HUH6_LIVER	1	1	0.0363	TRUE	53	396	64	110	0	FALSE	ACH-000671
HUH6_LIVER	AC104389.28--HBE1	2	2	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0242	0.0242	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HUH6_LIVER	0.44	1	0.0484	TRUE	0	35	0	55	35	FALSE	ACH-000671
HUH6_LIVER	FAM208B--GDI2	2	1	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	15	600	0.17	0	0.0242	0.0121	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	HUH6_LIVER	0	0.17	0.0363	FALSE	0	6	0	16	3	FALSE	ACH-000671
HUH6_LIVER	GPC5--GPC5-IT1	2	1	GPC5	10063	chr13:92797242:+	GPC5-IT1	16096	chr13:93161766:+	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0242	0.0121	NEIGHBORS_OVERLAP:+:+:[25488],GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5,GPC5-IT1->GPC5_intronic_transcript_1,chr13:93136859-93162347:+	HUH6_LIVER	0.25	1	0.0363	FALSE	21	23	3	6	0	FALSE	ACH-000671
HUH6_LIVER	TEAD4--EXD3	2	1	TEAD4	10811	chr12:3131183:+	EXD3	17673	chr9:140289856:-	ONLY_REF_SPLICE	YES	172	1	0.02	0.75	0.0242	0.0121	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3	HUH6_LIVER	0.02	0.75	0.0363	TRUE	0	0	0	1	0	FALSE	ACH-000671
HUH6_LIVER	BTRC--CCNY	2	0	BTRC	1166	chr10:103113985:+	CCNY	35927	chr10:35772332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	BTRC->Oncogene{Bushman},beta-transducin_repeat_containing_E3_ubiquitin_protein_ligase,chr10:103113820-103317078:+,CCNY->chr10:35535953-35860852:+,cyclin_Y	HUH6_LIVER	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000671
HUH6_LIVER	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	HUH6_LIVER	1	1	0.0242	TRUE	2	8	0	24	0	FALSE	ACH-000671
HUH6_LIVER	CPSF6--C9orf3	2	0	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	HUH6_LIVER	1	1	0.0242	TRUE	53	99	2	44	0	FALSE	ACH-000671
HUH6_LIVER	FARP1--STK24	2	0	FARP1	1931	chr13:98795746:+	STK24	70323	chr13:99171727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Aorta=1,Pituitary=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Ovary=1},LOCAL_INVERSION:+:-:[428],FARP1->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_1,chr13:98794816-99102027:+,STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24	HUH6_LIVER	1	1	0.0242	TRUE	0	0	0	2	0	TRUE	ACH-000671
HUH6_LIVER	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	27745	chr4:1232125:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HUH6_LIVER	1	1	0.0242	TRUE	1	1	1	3	0	FALSE	ACH-000671
HUH6_LIVER	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HUH6_LIVER	1	1	0.0242	TRUE	3	14	2	43	0	FALSE	ACH-000671
HUH6_LIVER	SETD8--CDK2AP1	2	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	HUH6_LIVER	1	1	0.0242	TRUE	0	0	0	18	0	TRUE	ACH-000671
HUH6_LIVER	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0.0363	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUH6_LIVER	1	1	0.0484	FALSE	76	45	6	15	0	FALSE	ACH-000671
HUH6_LIVER	AC104389.28--HBE1	1	2	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	5	2	0.38	0.6	0.0121	0.0242	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HUH6_LIVER	0.38	0.6	0.0363	TRUE	0	48	0	65	48	FALSE	ACH-000671
HUH6_LIVER	KRT8--SPRYD3	1	2	KRT8	10265	chr12:53294372:-	SPRYD3	25121	chr12:53460270:-	ONLY_REF_SPLICE	YES	7193	18	0	0.14	0.0121	0.0242	KRT8->chr12:53290977-53343738:-,keratin_8,SPRYD3->SPRY_domain_containing_3,chr12:53458388-53473204:-	HUH6_LIVER	0	0.14	0.0363	FALSE	0	0	0	1	0	FALSE	ACH-000671
HUH6_LIVER	ACSS3--KIFAP3	1	1	ACSS3	10794	chr12:81545875:+	KIFAP3	42512	chr1:169961396:-	ONLY_REF_SPLICE	YES	72	43	0.03	0.04	0.0121	0.0121	ACSS3->acyl-CoA_synthetase_short-chain_family_member_3,chr12:81331594-81650533:+,KIFAP3->chr1:169890467-170054349:-,kinesin_associated_protein_3	HUH6_LIVER	0.03	0.04	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000671
HUH6_LIVER	CAPZA2--RPS27A	1	1	CAPZA2	3371	chr7:116502704:+	RPS27A	26292	chr2:55459944:+	ONLY_REF_SPLICE	NO	63	42	0.03	0.05	0.0121	0.0121	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	HUH6_LIVER	0.03	0.05	0.0242	TRUE	0	0	0	3	0	FALSE	ACH-000671
HUH6_LIVER	DANCR--SNX5	1	1	DANCR	1530	chr4:53579126:+	SNX5	10453	chr20:17941969:-	ONLY_REF_SPLICE	NO	505	1243	0	0	0.0121	0.0121	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	HUH6_LIVER	0	0	0.0242	FALSE	0	0	0	7	0	FALSE	ACH-000671
HUH6_LIVER	MARCH6--CCT5	1	1	MARCH6	10353	chr5:10394897:+	CCT5	41550	chr5:10254257:+	ONLY_REF_SPLICE	NO	136	931	0.01	0	0.0121	0.0121	GTEx_v2:{count=1;pct=0.01%;dist=Kidney_-_Cortex=1},LOCAL_REARRANGEMENT:+:[87291],MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6,CCT5->chaperonin_containing_TCP1_subunit_5,chr5:10250033-10266524:+	HUH6_LIVER	0	0.01	0.0242	FALSE	0	0	0	3	0	FALSE	ACH-000671
HUH6_LIVER	MIPOL1--RP11-356O9.1	1	1	MIPOL1	18383	chr14:37777724:+	RP11-356O9.1	45703	chr14:38047909:+	ONLY_REF_SPLICE	YES	12	0	0.14	1	0.0121	0.0121	NEIGHBORS[11686],MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1,RP11-356O9.1->chr14:38033252-38048330:+	HUH6_LIVER	0.14	1	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000671
HUH6_LIVER	MYL6--GNAS	1	1	MYL6	2462	chr12:56553406:+	GNAS	25173	chr20:57470667:+	ONLY_REF_SPLICE	NO	53	870	0.04	0	0.0121	0.0121	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HUH6_LIVER	0	0.04	0.0242	FALSE	0	1	0	3	0	FALSE	ACH-000671
HUH6_LIVER	PPP5C--NCAPH	1	1	PPP5C	2466	chr19:46857246:+	NCAPH	32818	chr2:97034710:+	ONLY_REF_SPLICE	NO	102	88	0.02	0.02	0.0121	0.0121	PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,NCAPH->chr2:97001525-97039583:+,non-SMC_condensin_I_complex_subunit_H	HUH6_LIVER	0.02	0.02	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000671
HUH6_LIVER	RHOA--DAG1	1	1	RHOA	2179	chr3:49449253:-	DAG1	21789	chr3:49547852:+	ONLY_REF_SPLICE	YES	1319	392	0	0.01	0.0121	0.0121	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[55715],RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,DAG1->chr3:49506146-49573048:+,dystroglycan_1	HUH6_LIVER	0	0.01	0.0242	FALSE	0	0	0	8	0	FALSE	ACH-000671
HUH6_LIVER	RP11-296O14.3--TNFSF4	1	1	RP11-296O14.3	3164	chr1:173411058:-	TNFSF4	11987	chr1:173157708:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0121	0.0121	RP11-296O14.3->chr1:173386932-173430501:-,TNFSF4->chr1:173152873-173176452:-,tumor_necrosis_factor_superfamily_member_4	HUH6_LIVER	0.67	1	0.0242	TRUE	0	5	1	1	5	TRUE	ACH-000671
HUH6_LIVER	RP11-624L4.1--RP11-265N7.1	1	1	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0121	0.0121	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	HUH6_LIVER	0.25	1	0.0242	FALSE	0	20	1	20	0	FALSE	ACH-000671
HUH6_LIVER	TSPAN3--ETFA	1	1	TSPAN3	2475	chr15:77363234:-	ETFA	17291	chr15:76588078:-	ONLY_REF_SPLICE	YES	458	197	0	0.01	0.0121	0.0121	TSPAN3->chr15:77336359-77376326:-,tetraspanin_3,ETFA->chr15:76507696-76603813:-,electron_transfer_flavoprotein_alpha_subunit	HUH6_LIVER	0	0.01	0.0242	FALSE	0	0	0	2	0	FALSE	ACH-000671
NCIH1568_LUNG	TIMM23B--LINC00843	78	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9133	0.2693	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1568_LUNG	1	1	1.1826	TRUE	508	994	45	981	0	FALSE	ACH-000869
NCIH1568_LUNG	EIF3CL--SNX29P2	68	45	EIF3CL	8589	chr16:28399379:-	SNX29P2	30764	chr16:29380856:+	ONLY_REF_SPLICE	YES	2193	0	0.05	1	0.7962	0.5269	EIF3CL->chr16:28390900-28415200:-,eukaryotic_translation_initiation_factor_3_subunit_C-like,SNX29P2->chr16:29262829-29519817:+,chr16:29362067-29381593:+,sorting_nexin_29_pseudogene_2	NCIH1568_LUNG	0.05	1	1.3231	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	TIMM23--RP11-464F9.1	44	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	292	3	0.14	0.94	0.5152	0.0234	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1568_LUNG	0.14	0.94	0.5386	TRUE	519	3926	326	965	0	FALSE	ACH-000869
NCIH1568_LUNG	ACBD7--PROSP	36	6	ACBD7	1060	chr10:15130716:-	PROSP	16170	chr3:90264913:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4215	0.0703	ACBD7->acyl-CoA_binding_domain_containing_7,chr10:15119522-15130775:-,PROSP->chr3:90251466-90306565:-	NCIH1568_LUNG	1	1	0.4918	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	SQLE--NSMCE2	20	14	SQLE	2198	chr8:126011936:+	NSMCE2	27869	chr8:126369461:+	ONLY_REF_SPLICE	YES	238	152	0.12	0.18	0.2342	0.1639	NEIGHBORS[69396],SQLE->chr8:126010739-126034525:+,squalene_epoxidase,NSMCE2->NSE2/MMS21_homolog,_SMC5-SMC6_complex_SUMO_ligase,chr8:126103921-126379362:+	NCIH1568_LUNG	0.12	0.18	0.3981	FALSE	0	0	0	1	0	FALSE	ACH-000869
NCIH1568_LUNG	RP11-123O10.4--GRIP1	22	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2576	0.0585	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1568_LUNG	1	1	0.3161	FALSE	416	2512	207	587	0	FALSE	ACH-000869
NCIH1568_LUNG	SNX29P1--ENPEP	20	8	SNX29P1	3846	chr16:21397253:+	ENPEP	17384	chr4:111430809:+	ONLY_REF_SPLICE	YES	0	12	1	0.7	0.2342	0.0937	SNX29P1->chr16:21391313-21403412:+,sorting_nexin_29_pseudogene_1,ENPEP->chr4:111286889-111486441:+,glutamyl_aminopeptidase	NCIH1568_LUNG	0.7	1	0.3279	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	RP11-353N4.6--GFOD1	18	11	RP11-353N4.6	2219	chr1:149576700:+	GFOD1	22105	chr6:13365894:-	ONLY_REF_SPLICE	YES	173	20	0.14	0.59	0.2108	0.1288	RP11-353N4.6->chr1:149575482-149616786:+,GFOD1->chr6:13358062-13487894:-,glucose-fructose_oxidoreductase_domain_containing_1	NCIH1568_LUNG	0.14	0.59	0.3396	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	FAM188A--ACBD7	11	10	FAM188A	4630	chr10:15883425:-	ACBD7	23216	chr10:15121039:-	ONLY_REF_SPLICE	YES	70	0	0.23	1	0.1288	0.1171	FAM188A->chr10:15820169-15902519:-,family_with_sequence_similarity_188_member_A,ACBD7->acyl-CoA_binding_domain_containing_7,chr10:15119522-15130775:-	NCIH1568_LUNG	0.23	1	0.2459	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	MT-ND4--MT-ATP8	13	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1522	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1568_LUNG	1	1	0.1522	FALSE	230	198	14	283	0	FALSE	ACH-000869
NCIH1568_LUNG	HDAC8--RP11-525K10.3	10	9	HDAC8	4154	chrX:71787739:-	RP11-525K10.3	28680	chr16:80526662:-	ONLY_REF_SPLICE	YES	55	0	0.26	1	0.1171	0.1054	HDAC8->chrX:71549366-71792953:-,histone_deacetylase_8,RP11-525K10.3->chr16:80188950-80597032:-	NCIH1568_LUNG	0.26	1	0.2225	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	TLE2--AC005264.2	9	11	TLE2	8876	chr19:3019281:-	AC005264.2	28036	chr19:3143191:-	ONLY_REF_SPLICE	YES	164	2	0.11	0.91	0.1054	0.1288	LOCAL_REARRANGEMENT:-:[93941],TLE2->chr19:2997636-3047633:-,transducin_like_enhancer_of_split_2,AC005264.2->chr19:3141574-3155173:-	NCIH1568_LUNG	0.11	0.91	0.2342	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	CSNK1A1--ZNF300P1	9	8	CSNK1A1	2370	chr5:148929638:-	ZNF300P1	26909	chr5:150323434:-	ONLY_REF_SPLICE	YES	558	0	0.03	1	0.1054	0.0937	CSNK1A1->Oncogene{Bushman},casein_kinase_1_alpha_1,chr5:148871760-148931007:-,ZNF300P1->chr5:150310207-150325851:-,zinc_finger_protein_300_pseudogene_1	NCIH1568_LUNG	0.03	1	0.1991	TRUE	0	0	0	1	0	FALSE	ACH-000869
NCIH1568_LUNG	MT-ND4--MT-ATP8	11	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1288	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1568_LUNG	1	1	0.1288	FALSE	230	193	14	283	0	FALSE	ACH-000869
NCIH1568_LUNG	TLE2--AC005264.2	9	7	TLE2	8460	chr19:3019697:-	AC005264.2	28036	chr19:3143191:-	ONLY_REF_SPLICE	YES	121	2	0.12	0.89	0.1054	0.082	LOCAL_REARRANGEMENT:-:[93941],TLE2->chr19:2997636-3047633:-,transducin_like_enhancer_of_split_2,AC005264.2->chr19:3141574-3155173:-	NCIH1568_LUNG	0.12	0.89	0.1874	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	ENPEP--NMT2	9	5	ENPEP	13308	chr4:111441522:+	NMT2	40785	chr10:15154962:-	ONLY_REF_SPLICE	YES	13	41	0.52	0.25	0.1054	0.0585	ENPEP->chr4:111286889-111486441:+,glutamyl_aminopeptidase,NMT2->N-myristoyltransferase_2,chr10:15144583-15210692:-	NCIH1568_LUNG	0.25	0.52	0.1639	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	CCNY--PRIM2	8	6	CCNY	16762	chr10:35819171:+	PRIM2	43281	chr6:57467080:+	ONLY_REF_SPLICE	YES	180	98	0.07	0.12	0.0937	0.0703	CCNY->chr10:35535953-35860852:+,cyclin_Y,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	NCIH1568_LUNG	0.07	0.12	0.164	TRUE	0	0	0	1	0	FALSE	ACH-000869
NCIH1568_LUNG	RP11-680G10.1--GSE1	9	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	37	1	0.21	0.1054	0.0117	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1568_LUNG	0.21	1	0.1171	TRUE	458	1351	185	561	0	FALSE	ACH-000869
NCIH1568_LUNG	TLE2--AC005264.2	6	13	TLE2	8876	chr19:3019281:-	AC005264.2	26909	chr19:3148740:-	INCL_NON_REF_SPLICE	YES	164	4	0.1	0.83	0.0703	0.1522	LOCAL_REARRANGEMENT:-:[93941],TLE2->chr19:2997636-3047633:-,transducin_like_enhancer_of_split_2,AC005264.2->chr19:3141574-3155173:-	NCIH1568_LUNG	0.1	0.83	0.2225	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	MT-CO3--MT-ATP6	6	9	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0703	0.1054	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1568_LUNG	0.88	1	0.1757	FALSE	189	492	56	216	0	FALSE	ACH-000869
NCIH1568_LUNG	MT-CO3--MT-ATP6	8	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.0937	0.0117	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1568_LUNG	0.69	1	0.1054	FALSE	189	492	56	216	0	FALSE	ACH-000869
NCIH1568_LUNG	RP11-680G10.1--GSE1	8	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0937	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1568_LUNG	1	1	0.0937	TRUE	465	1949	224	605	0	FALSE	ACH-000869
NCIH1568_LUNG	EIF3CL--SNX29P2	5	8	EIF3CL	4096	chr16:28411192:-	SNX29P2	25709	chr16:29367108:+	ONLY_REF_SPLICE	YES	1144	0	0.01	1	0.0585	0.0937	EIF3CL->chr16:28390900-28415200:-,eukaryotic_translation_initiation_factor_3_subunit_C-like,SNX29P2->chr16:29262829-29519817:+,chr16:29362067-29381593:+,sorting_nexin_29_pseudogene_2	NCIH1568_LUNG	0.01	1	0.1522	TRUE	0	0	0	1	0	FALSE	ACH-000869
NCIH1568_LUNG	CALM3--MT-ND4L	5	7	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2296	0	0.01	1	0.0585	0.082	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1568_LUNG	0.01	1	0.1405	FALSE	1	1	0	107	0	FALSE	ACH-000869
NCIH1568_LUNG	HDAC8--RP11-525K10.3	4	11	HDAC8	4154	chrX:71787739:-	RP11-525K10.3	27479	chr16:80541666:-	ONLY_REF_SPLICE	YES	55	0	0.21	1	0.0468	0.1288	HDAC8->chrX:71549366-71792953:-,histone_deacetylase_8,RP11-525K10.3->chr16:80188950-80597032:-	NCIH1568_LUNG	0.21	1	0.1756	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	MT-CO3--MT-ATP6	4	10	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	2	0.74	0.88	0.0468	0.1171	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1568_LUNG	0.74	0.88	0.1639	FALSE	189	492	56	216	0	FALSE	ACH-000869
NCIH1568_LUNG	MT-CO3--MT-ATP6	3	12	MT-CO3	1152	chrM:9358:+	MT-ATP6	4937	chrM:8679:+	INCL_NON_REF_SPLICE	YES	4	22	0.79	0.41	0.0351	0.1405	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1568_LUNG	0.41	0.79	0.1756	FALSE	189	492	56	216	0	FALSE	ACH-000869
NCIH1568_LUNG	MT-ND4--MT-ATP8	5	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11556	61	0	0.13	0.0585	0.0468	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1568_LUNG	0	0.13	0.1053	FALSE	231	217	16	283	0	FALSE	ACH-000869
NCIH1568_LUNG	MT-ND4--MT-ATP8	6	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1568_LUNG	1	1	0.0703	FALSE	231	205	14	283	0	FALSE	ACH-000869
NCIH1568_LUNG	INTS1--TMEM184A	5	3	INTS1	9792	chr7:1535792:-	TMEM184A	37858	chr7:1595120:-	ONLY_REF_SPLICE	YES	313	114	0.02	0.07	0.0585	0.0351	LOCAL_REARRANGEMENT:-:[36382],INTS1->chr7:1509913-1545489:-,integrator_complex_subunit_1,TMEM184A->chr7:1581871-1600457:-,transmembrane_protein_184A	NCIH1568_LUNG	0.02	0.07	0.0936	TRUE	0	0	0	1	0	FALSE	ACH-000869
NCIH1568_LUNG	MT-ATP6--MT-CO1	5	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9586	21447	0	0	0.0585	0.0234	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1568_LUNG	0	0	0.0819	FALSE	183	104	9	328	0	FALSE	ACH-000869
NCIH1568_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13966	0	0	1	0.0585	0.0234	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1568_LUNG	0	1	0.0819	FALSE	231	217	16	283	0	FALSE	ACH-000869
NCIH1568_LUNG	MT-CO3--MT-ATP6	3	9	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	2	2	0.86	0.86	0.0351	0.1054	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1568_LUNG	0.86	0.86	0.1405	FALSE	189	492	56	216	0	FALSE	ACH-000869
NCIH1568_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0585	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1568_LUNG	1	1	0.0585	FALSE	231	205	14	283	0	FALSE	ACH-000869
NCIH1568_LUNG	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0585	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1568_LUNG	1	1	0.0585	TRUE	0	0	0	434	0	FALSE	ACH-000869
NCIH1568_LUNG	MT-CO3--MT-ATP6	4	3	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0468	0.0351	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1568_LUNG	0.78	1	0.0819	FALSE	189	492	56	216	0	FALSE	ACH-000869
NCIH1568_LUNG	RP11-120D5.1--MID1	4	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	8	336	0.43	0.02	0.0468	0.0234	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1568_LUNG	0.02	0.43	0.0702	FALSE	16	356	14	466	0	FALSE	ACH-000869
NCIH1568_LUNG	SQLE--NSMCE2	1	14	SQLE	3828	chr8:126015670:+	NSMCE2	27869	chr8:126369461:+	ONLY_REF_SPLICE	YES	269	152	0.05	0.09	0.0117	0.1639	NEIGHBORS[69396],SQLE->chr8:126010739-126034525:+,squalene_epoxidase,NSMCE2->NSE2/MMS21_homolog,_SMC5-SMC6_complex_SUMO_ligase,chr8:126103921-126379362:+	NCIH1568_LUNG	0.05	0.09	0.1756	FALSE	0	0	0	1	0	FALSE	ACH-000869
NCIH1568_LUNG	SQLE--NSMCE2	1	14	SQLE	2575	chr8:126012313:+	NSMCE2	27869	chr8:126369461:+	ONLY_REF_SPLICE	YES	245	152	0.06	0.09	0.0117	0.1639	NEIGHBORS[69396],SQLE->chr8:126010739-126034525:+,squalene_epoxidase,NSMCE2->NSE2/MMS21_homolog,_SMC5-SMC6_complex_SUMO_ligase,chr8:126103921-126379362:+	NCIH1568_LUNG	0.06	0.09	0.1756	FALSE	0	0	0	1	0	FALSE	ACH-000869
NCIH1568_LUNG	LINC00623--RARB	3	5	LINC00623	2231	chr1:144340526:-	RARB	26246	chr3:25502684:+	ONLY_REF_SPLICE	YES	172	3	0.04	0.73	0.0351	0.0585	LINC00623->chr1:144275918-144341756:-,long_intergenic_non-protein_coding_RNA_623,RARB->Oncogene{Bushman},chr3:25215823-25639423:+,retinoic_acid_receptor_beta	NCIH1568_LUNG	0.04	0.73	0.0936	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10120	61	0	0.12	0.0351	0.0585	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1568_LUNG	0	0.12	0.0936	FALSE	231	215	16	283	0	FALSE	ACH-000869
NCIH1568_LUNG	RP11-96H19.1--RP11-446N19.1	2	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.0234	0.1054	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1568_LUNG	0.85	1	0.1288	FALSE	192	492	57	212	0	FALSE	ACH-000869
NCIH1568_LUNG	RP11-96H19.1--RP11-446N19.1	2	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.0234	0.1054	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1568_LUNG	0.79	1	0.1288	FALSE	407	2205	196	549	0	FALSE	ACH-000869
NCIH1568_LUNG	SLC1A5--MT-ND4L	3	5	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	914	0	0.01	1	0.0351	0.0585	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1568_LUNG	0.01	1	0.0936	FALSE	0	0	0	189	0	FALSE	ACH-000869
NCIH1568_LUNG	EFNA1--CALR	4	0	EFNA1	1546	chr1:155100481:+	CALR	9745	chr19:13049423:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0	EFNA1->chr1:155099936-155107333:+,ephrin_A1,CALR->calreticulin,chr19:13049392-13055303:+	NCIH1568_LUNG	1	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	RP11-353N4.6--SEC22B	3	4	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	159	728	0.04	0.01	0.0351	0.0468	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	NCIH1568_LUNG	0.01	0.04	0.0819	FALSE	49	42	7	43	0	FALSE	ACH-000869
NCIH1568_LUNG	RP11-476K15.1--CTD-2015H3.2	3	4	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0351	0.0468	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCIH1568_LUNG	0.78	1	0.0819	FALSE	0	46	0	73	0	FALSE	ACH-000869
NCIH1568_LUNG	RP11-96H19.1--RP11-446N19.1	2	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	1	0.77	0.91	0.0234	0.0937	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1568_LUNG	0.77	0.91	0.1171	FALSE	515	4851	409	746	0	FALSE	ACH-000869
NCIH1568_LUNG	CTD-2337A12.1--CAST	3	3	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	330	1	0.02	0.0351	0.0351	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH1568_LUNG	0.02	1	0.0702	TRUE	347	1186	183	220	0	FALSE	ACH-000869
NCIH1568_LUNG	MT-CO3--MT-ATP6	3	3	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0351	0.0351	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1568_LUNG	0.75	1	0.0702	FALSE	189	492	56	216	0	FALSE	ACH-000869
NCIH1568_LUNG	TLE2--AC005264.2	3	3	TLE2	8209	chr19:3019948:-	AC005264.2	26876	chr19:3148773:-	INCL_NON_REF_SPLICE	YES	115	4	0.05	0.6	0.0351	0.0351	LOCAL_REARRANGEMENT:-:[93941],TLE2->chr19:2997636-3047633:-,transducin_like_enhancer_of_split_2,AC005264.2->chr19:3141574-3155173:-	NCIH1568_LUNG	0.05	0.6	0.0702	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	9443	20746	0	0	0.0351	0.0234	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1568_LUNG	0	0	0.0585	FALSE	183	104	9	328	0	FALSE	ACH-000869
NCIH1568_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	13966	0	0	1	0.0351	0.0234	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1568_LUNG	0	1	0.0585	FALSE	231	217	16	283	0	FALSE	ACH-000869
NCIH1568_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	11556	1846	0	0	0.0351	0.0234	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1568_LUNG	0	0	0.0585	FALSE	231	217	16	283	0	FALSE	ACH-000869
NCIH1568_LUNG	SLC35F6--OST4	3	2	SLC35F6	5494	chr2:27001028:+	OST4	11876	chr2:27294331:-	INCL_NON_REF_SPLICE	YES	568	28	0.01	0.15	0.0351	0.0234	SLC35F6->chr2:26987152-27004099:+,solute_carrier_family_35_member_F6,OST4->chr2:27293340-27294641:-,oligosaccharyltransferase_complex_subunit_4,_non-catalytic	NCIH1568_LUNG	0.01	0.15	0.0585	FALSE	0	0	0	1	0	FALSE	ACH-000869
NCIH1568_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1465	chrM:11224:+	MT-ATP8	5404	chrM:8391:+	INCL_NON_REF_SPLICE	YES	14496	0	0	1	0.0351	0.0117	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1568_LUNG	0	1	0.0468	FALSE	231	217	16	283	0	FALSE	ACH-000869
NCIH1568_LUNG	RP11-1057B8.2--RP11-452N4.1	3	1	RP11-1057B8.2	3793	chr8:135893523:+	RP11-452N4.1	8797	chr8:136300339:+	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0351	0.0117	RP11-1057B8.2->chr8:135862178-135894142:+,RP11-452N4.1->chr8:136246374-136311962:+	NCIH1568_LUNG	0.5	1	0.0468	TRUE	0	0	0	3	0	TRUE	ACH-000869
NCIH1568_LUNG	RP11-123O10.4--GRIP1	3	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0.0117	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1568_LUNG	1	1	0.0468	FALSE	93	270	15	244	0	FALSE	ACH-000869
NCIH1568_LUNG	AC002066.1--AC073130.1	3	0	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	NCIH1568_LUNG	1	1	0.0351	FALSE	0	3	0	33	0	FALSE	ACH-000869
NCIH1568_LUNG	FAM120B--PSMB1	3	0	FAM120B	3590	chr6:170615930:+	PSMB1	23731	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	NCIH1568_LUNG	1	1	0.0351	TRUE	0	2	0	5	0	TRUE	ACH-000869
NCIH1568_LUNG	LYPLAL1--RRP15	3	0	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	NCIH1568_LUNG	1	1	0.0351	TRUE	0	12	0	13	2	TRUE	ACH-000869
NCIH1568_LUNG	RP11-353N4.6--SEC22B	2	4	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	173	728	0.03	0.01	0.0234	0.0468	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	NCIH1568_LUNG	0.01	0.03	0.0702	FALSE	49	42	7	43	0	FALSE	ACH-000869
NCIH1568_LUNG	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.82	0.9	0.0117	0.0937	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1568_LUNG	0.82	0.9	0.1054	FALSE	467	2173	244	435	0	FALSE	ACH-000869
NCIH1568_LUNG	SAMD5--SASH1	2	2	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	15	36	0.21	0.1	0.0234	0.0234	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NCIH1568_LUNG	0.1	0.21	0.0468	TRUE	53	396	64	110	0	FALSE	ACH-000869
NCIH1568_LUNG	RP11-1057B8.2--RP11-452N4.1	2	1	RP11-1057B8.2	3793	chr8:135893523:+	RP11-452N4.1	9814	chr8:136303419:+	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0234	0.0117	RP11-1057B8.2->chr8:135862178-135894142:+,RP11-452N4.1->chr8:136246374-136311962:+	NCIH1568_LUNG	0.43	1	0.0351	TRUE	0	0	0	2	0	TRUE	ACH-000869
NCIH1568_LUNG	CNOT1--PSMB1	2	0	CNOT1	25716	chr16:58583623:-	PSMB1	54128	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	NCIH1568_LUNG	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	DCAF6--RDX	2	0	DCAF6	14064	chr1:167974031:+	RDX	35058	chr11:110150481:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	DCAF6->DDB1_and_CUL4_associated_factor_6,chr1:167905021-168045081:+,RDX->chr11:110045605-110167447:-,radixin	NCIH1568_LUNG	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	27609	chr13:114193672:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	NCIH1568_LUNG	1	1	0.0234	TRUE	0	4	1	3	2	TRUE	ACH-000869
NCIH1568_LUNG	HAUS4--MRPL52	2	0	HAUS4	2493	chr14:23424309:-	MRPL52	15895	chr14:23303381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},HAUS4->HAUS_augmin_like_complex_subunit_4,chr14:23415437-23426370:-,MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	NCIH1568_LUNG	1	1	0.0234	TRUE	0	1	1	1	0	TRUE	ACH-000869
NCIH1568_LUNG	HEXA--SIAH1	2	0	HEXA	18315	chr15:72638576:-	SIAH1	36856	chr16:48396341:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},HEXA->chr15:72635775-72668817:-,hexosaminidase_subunit_alpha,SIAH1->chr16:48390275-48482313:-,siah_E3_ubiquitin_protein_ligase_1	NCIH1568_LUNG	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	LBR--ENAH	2	0	LBR	1972	chr1:225615656:-	ENAH	23714	chr1:225755116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	LOCAL_REARRANGEMENT:-:[57910],LBR->chr1:225589204-225616627:-,lamin_B_receptor,ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila)	NCIH1568_LUNG	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	LINC01063--VPS53	2	0	LINC01063	1200	chr3:196359259:-	VPS53	17473	chr17:565135:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	LINC01063->chr3:196358369-196359458:-,long_intergenic_non-protein_coding_RNA_1063,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	NCIH1568_LUNG	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	RP11-353N4.6--SEC22B	1	4	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	173	709	0.03	0.01	0.0117	0.0468	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	NCIH1568_LUNG	0.01	0.03	0.0585	FALSE	33	36	9	21	0	FALSE	ACH-000869
NCIH1568_LUNG	STX18-AS1--MSX1	2	0	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	NCIH1568_LUNG	1	1	0.0234	TRUE	37	101	7	40	0	FALSE	ACH-000869
NCIH1568_LUNG	YWHAZ--ZNF706	2	0	YWHAZ	1120	chr8:101965497:-	ZNF706	24352	chr8:102213971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_FI:{Skin=[count:2=pct:0.6],Blood=[count:2=pct:1.1],Esophagus=[count:1=pct:0.2],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta,ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706	NCIH1568_LUNG	1	1	0.0234	TRUE	1	0	0	2	0	TRUE	ACH-000869
NCIH1568_LUNG	ZNF283--POLR2B	2	0	ZNF283	1153	chr19:44331596:+	POLR2B	28125	chr4:57876527:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	ZNF283->chr19:44331444-44353307:+,zinc_finger_protein_283,POLR2B->chr4:57843888-57897334:+,polymerase_(RNA)_II_subunit_B	NCIH1568_LUNG	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	HOMEZ--CDKL1	1	3	HOMEZ	3410	chr14:23755122:-	CDKL1	32445	chr14:50808940:-	ONLY_REF_SPLICE	YES	105	7	0.04	0.36	0.0117	0.0351	HOMEZ->chr14:23741666-23768656:-,homeobox_and_leucine_zipper_encoding,CDKL1->chr14:50796310-50883179:-,cyclin_dependent_kinase_like_1	NCIH1568_LUNG	0.04	0.36	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	CNOT4--SUN5	1	2	CNOT4	1239	chr7:135194637:-	SUN5	24865	chr20:31590725:-	ONLY_REF_SPLICE	YES	46	0	0.06	1	0.0117	0.0234	CNOT4->CCR4-NOT_transcription_complex_subunit_4,chr7:135046547-135194875:-,SUN5->Sad1_and_UNC84_domain_containing_5,chr20:31571579-31592239:-	NCIH1568_LUNG	0.06	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000869
NCIH1568_LUNG	CSNK1A1--ZNF300P1	1	2	CSNK1A1	1603	chr5:148930405:-	ZNF300P1	26909	chr5:150323434:-	ONLY_REF_SPLICE	NO	438	0	0.01	1	0.0117	0.0234	CSNK1A1->Oncogene{Bushman},casein_kinase_1_alpha_1,chr5:148871760-148931007:-,ZNF300P1->chr5:150310207-150325851:-,zinc_finger_protein_300_pseudogene_1	NCIH1568_LUNG	0.01	1	0.0351	FALSE	0	0	0	1	0	FALSE	ACH-000869
NCIH1568_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	9	336	0.25	0.01	0.0117	0.0234	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1568_LUNG	0.01	0.25	0.0351	FALSE	0	48	1	163	0	FALSE	ACH-000869
NCIH1568_LUNG	ANO7--HDLBP	1	1	ANO7	20467	chr2:242157796:+	HDLBP	33898	chr2:242207956:-	ONLY_REF_SPLICE	YES	3	462	0.4	0	0.0117	0.0117	GTEx_FI:{Brain=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[1887],ANO7->anoctamin_7,chr2:242127924-242164792:+,HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein	NCIH1568_LUNG	0	0.4	0.0234	FALSE	2	1	0	3	0	FALSE	ACH-000869
NCIH1568_LUNG	EGFR--COBL	1	1	EGFR	1345	chr7:55087058:+	COBL	52528	chr7:51204028:-	ONLY_REF_SPLICE	YES	630	118	0	0.02	0.0117	0.0117	EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,COBL->chr7:51083909-51384515:-,cordon-bleu_WH2_repeat_protein	NCIH1568_LUNG	0	0.02	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000869
NCIH1568_LUNG	EIF4G3--HP1BP3	1	1	EIF4G3	9829	chr1:21377359:-	HP1BP3	56988	chr1:21106404:-	ONLY_REF_SPLICE	YES	54	481	0.04	0	0.0117	0.0117	NEIGHBORS[19147],EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	NCIH1568_LUNG	0	0.04	0.0234	FALSE	0	1	0	1	0	FALSE	ACH-000869
NCIH1568_LUNG	KMT2C--RHEB	1	1	KMT2C	7421	chr7:152007051:-	RHEB	81305	chr7:151174501:-	ONLY_REF_SPLICE	YES	17	610	0.11	0	0.0117	0.0117	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,RHEB->Ras_homolog_enriched_in_brain,chr7:151163098-151217206:-	NCIH1568_LUNG	0	0.11	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000869
NCIH1568_LUNG	PCDH7--RP11-617I14.1	1	1	PCDH7	8591	chr4:30921967:+	RP11-617I14.1	20426	chr4:31178243:+	ONLY_REF_SPLICE	YES	86	0	0.02	1	0.0117	0.0117	NEIGHBORS[24344],PCDH7->chr4:30722037-31148422:+,protocadherin_7,RP11-617I14.1->chr4:31172766-31213297:+	NCIH1568_LUNG	0.02	1	0.0234	FALSE	3	3	0	2	0	FALSE	ACH-000869
NCIH1568_LUNG	TIMM23--RP11-464F9.1	1	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	26959	chr10:75454562:-	ONLY_REF_SPLICE	YES	292	5	0.01	0.29	0.0117	0.0117	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1568_LUNG	0.01	0.29	0.0234	FALSE	1	3	0	8	0	FALSE	ACH-000869
NCIH1568_LUNG	TIPRL--APPL1	1	1	TIPRL	1249	chr1:168148419:+	APPL1	19055	chr3:57276884:+	ONLY_REF_SPLICE	YES	285	134	0.01	0.01	0.0117	0.0117	TIPRL->TOR_signaling_pathway_regulator,chr1:168148171-168169950:+,APPL1->adaptor_protein,_phosphotyrosine_interacting_with_PH_domain_and_leucine_zipper_1,chr3:57261765-57307496:+	NCIH1568_LUNG	0.01	0.01	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000869
NCIH1568_LUNG	TMCO3--DCUN1D2	1	1	TMCO3	7521	chr13:114157903:+	DCUN1D2	23402	chr13:114138371:-	ONLY_REF_SPLICE	YES	344	36	0.01	0.05	0.0117	0.0117	LOCAL_INVERSION:+:-:[43],TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2	NCIH1568_LUNG	0.01	0.05	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000869
NCIH1568_LUNG	TRA2A--IGF2BP3	1	1	TRA2A	1253	chr7:23571408:-	IGF2BP3	34521	chr7:23358873:-	ONLY_REF_SPLICE	YES	592	599	0	0	0.0117	0.0117	HGNC_GENEFAM,NEIGHBORS[34313],TRA2A->chr7:23544399-23571660:-,transformer_2_alpha_homolog,IGF2BP3->chr7:23349828-23510086:-,insulin_like_growth_factor_2_mRNA_binding_protein_3	NCIH1568_LUNG	0	0	0.0234	FALSE	0	0	0	2	0	FALSE	ACH-000869
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	258	46	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	2.6304	0.469	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	3.0994	TRUE	508	994	45	981	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	212	106	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	63	0	0.83	1	2.1614	1.0807	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	3.2421	TRUE	0	2	1	16	2	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	135	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	53	9	0.73	0.94	1.3764	0.0612	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.94	1.4376	TRUE	519	3926	326	965	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	74	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7545	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7545	TRUE	0	0	0	518	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	1	104	BCR	20761	chr22:23631808:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	63	0	0.62	1	0.0102	1.0603	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	1.0705	TRUE	0	2	1	16	2	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RHPN1--HLA-B	24	1	RHPN1	7319	chr8:144462880:+	HLA-B	15422	chr6:31323373:-	INCL_NON_REF_SPLICE	NO	192	4434	0.12	0.01	0.2447	0.0102	RHPN1->chr8:144451057-144466390:+,rhophilin,_Rho_GTPase_binding_protein_1,HLA-B->chr6:31321649-31324965:-,major_histocompatibility_complex,_class_I,_B	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.12	0.2549	FALSE	0	0	0	1	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC079610.1	21	0	IKZF2	5217	chr2:214012432:-	AC079610.1	32267	chr2:213446132:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2141	0	NEIGHBORS_OVERLAP:-:-:[21840],IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC079610.1->chr2:213446081-213886269:-	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2141	FALSE	0	4	0	1	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1733	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1733	TRUE	0	0	0	518	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	15	3	ABL1	1510	chr9:133589842:+	BCR	40306	chr22:23632526:+	ONLY_REF_SPLICE	YES	0	68	1	0.21	0.1529	0.0306	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.1835	TRUE	0	0	0	6	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	14	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1427	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1427	FALSE	292	1546	117	613	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	13	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1325	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1325	TRUE	0	0	0	81	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	9	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0918	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0918	TRUE	22	156	2	142	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-29--AC096579.7	4	17	IGKV2-29	1564	chr2:89533830:-	AC096579.7	7461	chr2:89157196:-	INCL_NON_REF_SPLICE	YES	39	901	0.35	0.02	0.0408	0.1733	GTEx_FI:{Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Liver=[count:1=pct:0.8],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Esophagus=[count:1=pct:0.2]},IGKV2-29->chr2:89533655-89534393:-,immunoglobulin_kappa_variable_2-29_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.35	0.2141	TRUE	5	108	11	2	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	7	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	3897	0	0	1	0.0714	0.0102	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0816	FALSE	0	0	0	100	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PARP11--TMEM117	6	4	PARP11	1231	chr12:3982378:-	TMEM117	23532	chr12:44338013:+	ONLY_REF_SPLICE	YES	10	1	0.5	0.91	0.0612	0.0408	PARP11->chr12:3900213-3982608:-,poly(ADP-ribose)_polymerase_family_member_11,TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.91	0.102	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM117--HDAC7	6	3	TMEM117	2535	chr12:44238731:+	HDAC7	27238	chr12:48189550:-	ONLY_REF_SPLICE	YES	0	145	1	0.06	0.0612	0.0306	TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117,HDAC7->chr12:48176505-48226915:-,histone_deacetylase_7	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0918	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	5	2	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	0	68	1	0.09	0.051	0.0204	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.0714	TRUE	0	2	0	9	2	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PABPC1--EIF1B	5	1	PABPC1	2076	chr8:101733962:-	EIF1B	18545	chr3:40351362:+	INCL_NON_REF_SPLICE	YES	1390	159	0	0.04	0.051	0.0102	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,EIF1B->Oncogene{Bushman},chr3:40351175-40353915:+,eukaryotic_translation_initiation_factor_1B	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0612	FALSE	0	0	0	1	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	5	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.051	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.051	TRUE	0	0	0	81	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	0	EIF1	1087	chr17:39845223:+	RPS28	8126	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	0	0	0	81	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	0	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	0	0	0	81	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--SRP9	4	0	RCC1	2175	chr1:28834672:+	SRP9	18984	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	3	3	EEF2	8863	chr19:3977449:-	RPS28	13639	chr19:8386422:+	INCL_NON_REF_SPLICE	YES	3598	0	0	1	0.0306	0.0306	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0612	FALSE	0	0	0	100	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--PPP6R2	3	2	OAZ1	1259	chr19:2269743:+	PPP6R2	23324	chr22:50873395:+	ONLY_REF_SPLICE	YES	2265	30	0	0.14	0.0306	0.0204	GTEx_FI:{Blood=[count:2=pct:1.1],Lung=[count:1=pct:0.6],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=6;pct=0.07%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Artery_-_Tibial=1,Lung=1,Whole_Blood=1,Colon_-_Sigmoid=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.14	0.051	FALSE	6	1	0	7	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEP15--HS2ST1	3	2	SEP15	2787	chr1:87368964:-	HS2ST1	15816	chr1:87538617:+	ONLY_REF_SPLICE	YES	945	16	0.01	0.24	0.0306	0.0204	LOCAL_INVERSION:-:+:[224],SEP15->chr1:87328132-87380107:-,HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.24	0.051	FALSE	0	1	0	1	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	3	1	EEF2	8854	chr19:3977458:-	RPS28	13630	chr19:8386413:+	INCL_NON_REF_SPLICE	YES	3710	0	0	1	0.0306	0.0102	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0408	FALSE	0	0	0	100	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FUBP1--FAM120B	3	1	FUBP1	14090	chr1:78414840:-	FAM120B	35165	chr6:170704575:+	ONLY_REF_SPLICE	YES	226	9	0.02	0.31	0.0306	0.0102	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cortex=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.31	0.0408	TRUE	0	0	0	1	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	36	702	0.1	0.01	0.0306	0.0102	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.1	0.0408	FALSE	0	0	0	434	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PARP11--TMEM117	2	5	PARP11	2353	chr12:3973002:-	TMEM117	23532	chr12:44338013:+	ONLY_REF_SPLICE	YES	11	1	0.39	0.88	0.0204	0.051	PARP11->chr12:3900213-3982608:-,poly(ADP-ribose)_polymerase_family_member_11,TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.88	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0.0102	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	FALSE	515	4851	409	746	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RSRC1--MLF1	3	1	RSRC1	6214	chr3:157841780:+	MLF1	29503	chr3:158310223:+	ONLY_REF_SPLICE	YES	85	0	0.04	1	0.0306	0.0102	NEIGHBORS[25433],RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MLF1->Oncogene{Bushman},chr3:158288952-158325041:+,myeloid_leukemia_factor_1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0408	FALSE	0	0	0	3	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A9--SKIV2L2	3	1	SLC38A9	7186	chr5:54993674:-	SKIV2L2	40747	chr5:54635838:+	ONLY_REF_SPLICE	YES	16	112	0.2	0.03	0.0306	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},SLC38A9->chr5:54921673-55069022:-,solute_carrier_family_38_member_9,SKIV2L2->Ski2_like_RNA_helicase_2,chr5:54603588-54721409:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.2	0.0408	TRUE	0	0	0	2	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0306	TRUE	0	0	0	434	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0306	TRUE	0	0	0	434	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM117--HDAC7	2	3	TMEM117	2535	chr12:44238731:+	HDAC7	26989	chr12:48189799:-	ONLY_REF_SPLICE	YES	0	123	1	0.04	0.0204	0.0306	TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117,HDAC7->chr12:48176505-48226915:-,histone_deacetylase_7	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.051	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HS2ST1--SEP15	2	2	HS2ST1	1513	chr1:87380843:+	SEP15	28222	chr1:87346408:-	ONLY_REF_SPLICE	YES	10	848	0.29	0	0.0204	0.0204	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.29	0.0408	FALSE	0	3	0	8	1	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	10	0	0.29	1	0.0204	0.0204	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.0408	FALSE	272	151	14	158	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	36	0	0.08	1	0.0204	0.0102	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0306	FALSE	125	705	46	456	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL22--GRINA	2	1	RPL22	8153	chr1:6252990:-	GRINA	17579	chr8:145066633:+	ONLY_REF_SPLICE	YES	3015	870	0	0	0.0204	0.0102	RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22,GRINA->chr8:145064226-145067583:+,glutamate_ionotropic_receptor_NMDA_type_subunit_associated_protein_1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0306	FALSE	0	0	0	1	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATL2--IGJ	2	0	ATL2	11202	chr2:38540293:-	IGJ	24098	chr4:71532231:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,IGJ->chr4:71521258-71547534:-	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL7A--UBTF	2	0	BCL7A	8549	chr12:122492832:+	UBTF	18894	chr17:42295664:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+,UBTF->chr17:42282401-42298994:-,upstream_binding_transcription_factor,_RNA_polymerase_I	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND3--LDLRAP1	2	0	DENND3	20287	chr8:142178624:+	LDLRAP1	42764	chr1:25880413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	DENND3->DENN_domain_containing_3,chr8:142127377-142205907:+,LDLRAP1->chr1:25870071-25895377:+,low_density_lipoprotein_receptor_adaptor_protein_1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EZH2--CUL1	2	0	EZH2	1158	chr7:148581256:-	CUL1	26755	chr7:148427054:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_INVERSION:-:+:[6347],EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit,CUL1->Oncogene{Bushman},chr7:148395006-148498128:+,cullin_1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	2	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FUBP1--CLPTM1L	2	0	FUBP1	14090	chr1:78414840:-	CLPTM1L	39166	chr5:1318568:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITFG1--CNPPD1	2	0	ITFG1	19556	chr16:47345151:-	CNPPD1	35153	chr2:220041569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1,CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTFR1--MYBL1	2	0	MTFR1	1051	chr8:66557019:+	MYBL1	24858	chr8:67514758:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MTFR1->chr8:66556969-66683496:+,mitochondrial_fission_regulator_1,MYBL1->MYB_proto-oncogene_like_1,Oncogene{Bushman},chr8:67474410-67526482:-	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--DVL1	2	0	OAZ1	1259	chr19:2269743:+	DVL1	9459	chr1:1278138:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,DVL1->chr1:1270656-1284730:-,dishevelled_segment_polarity_protein_1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4D--NDUFAF2	2	0	PDE4D	1070	chr5:59817878:-	NDUFAF2	60965	chr5:60368952:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	2	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--MRPL3	2	0	RCC1	2175	chr1:28834672:+	MRPL3	27527	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	6	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPRD1A--HGS	2	0	RPRD1A	10586	chr18:33606863:-	HGS	25285	chr17:79653342:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,HGS->chr17:79650356-79670168:+,hepatocyte_growth_factor-regulated_tyrosine_kinase_substrate	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAMP1--AP3B1	2	0	SCAMP1	1214	chr5:77656552:+	AP3B1	36376	chr5:77425131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[65760],SCAMP1->chr5:77656339-77776562:+,secretory_carrier_membrane_protein_1,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STIP1--TRIM22	2	0	STIP1	3460	chr11:63960759:+	TRIM22	20126	chr11:5719545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1,TRIM22->chr11:5710919-5758319:+,tripartite_motif_containing_22	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TPD52--KAT6A	2	0	TPD52	6214	chr8:81083660:-	KAT6A	30880	chr8:41906820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0102	0.0306	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.0408	FALSE	16	356	14	466	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAK--CTBP1	1	2	GAK	5947	chr4:905461:-	CTBP1	44732	chr4:1232125:-	ONLY_REF_SPLICE	NO	68	201	0.04	0.01	0.0102	0.0204	GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0306	FALSE	0	0	0	1	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	53	0	0.05	1	0.0102	0.0204	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0306	FALSE	164	806	69	479	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	13	0	0.19	1	0.0102	0.0204	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.0306	FALSE	0	48	1	163	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL12--PLEKHJ1	1	2	RPL12	3125	chr9:130211560:-	PLEKHJ1	11197	chr19:2234239:-	ONLY_REF_SPLICE	YES	2659	154	0	0.02	0.0102	0.0204	RPL12->chr9:130209953-130213684:-,ribosomal_protein_L12,PLEKHJ1->chr19:2230002-2237703:-,pleckstrin_homology_domain_containing_J1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0306	FALSE	0	0	0	1	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	YES	10	0	0.23	1	0.0102	0.0204	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.0306	FALSE	28	14	1	23	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND3--SLC45A4	1	1	DENND3	20287	chr8:142178624:+	SLC45A4	41134	chr8:142264728:-	ONLY_REF_SPLICE	YES	581	0	0	1	0.0102	0.0102	GTEx_FI:{Blood=[count:2=pct:1.1]},GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:+:-:[11358],DENND3->DENN_domain_containing_3,chr8:142127377-142205907:+,SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0204	FALSE	1	0	0	1	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--DAZAP1	1	1	NOC4L	2218	chr12:132630210:+	DAZAP1	22719	chr19:1428841:+	ONLY_REF_SPLICE	YES	59	361	0.03	0.01	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	1	1	NOC4L	2218	chr12:132630210:+	FBRSL1	14520	chr12:133084739:+	ONLY_REF_SPLICE	YES	59	6	0.03	0.25	0.0102	0.0102	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.25	0.0204	TRUE	2	1	0	3	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	1	1	NOC4L	2218	chr12:132630210:+	FBRSL1	24704	chr12:133146512:+	ONLY_REF_SPLICE	NO	59	120	0.03	0.02	0.0102	0.0102	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RB1CC1--XPO1	1	1	RB1CC1	2687	chr8:53626635:-	XPO1	34509	chr2:61761038:-	ONLY_REF_SPLICE	NO	42	193	0.05	0.01	0.0102	0.0102	RB1CC1->Oncogene{Bushman},RB1_inducible_coiled-coil_1,chr8:53535016-53658403:-,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--CSDE1	1	1	RPS3	2292	chr11:75111821:+	CSDE1	20997	chr1:115282346:-	ONLY_REF_SPLICE	YES	4090	420	0	0	0.0102	0.0102	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0204	FALSE	0	0	0	2	0	FALSE	ACH-000432
BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWC3--GUK1	1	1	WWC3	21702	chrX:10102636:+	GUK1	36242	chr1:228333727:+	ONLY_REF_SPLICE	NO	111	533	0.02	0	0.0102	0.0102	WWC3->WWC_family_member_3,chrX:9983602-10112518:+,GUK1->chr1:228327663-228336685:+,guanylate_kinase_1	BV173_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000432
PRECLH_PROSTATE	TIMM23B--LINC00843	79	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.239	0.5332	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PRECLH_PROSTATE	0.99	1	1.7722	TRUE	508	994	45	981	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-CO1--MT-RNR2	33	100	MT-CO1	1653	chrM:6556:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	35061	0	0	1	0.5175	1.5683	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	1	2.0858	FALSE	44	51	6	21	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-CO1--MT-RNR2	43	33	MT-CO1	1603	chrM:6506:+	MT-RNR2	5550	chrM:1678:+	INCL_NON_REF_SPLICE	YES	29762	0	0	1	0.6744	0.5175	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	1	1.1919	FALSE	44	51	6	21	0	FALSE	ACH-000170
PRECLH_PROSTATE	TIMM23--RP11-464F9.1	51	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.7998	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PRECLH_PROSTATE	1	1	0.7998	TRUE	519	3926	326	965	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-CO1--MT-RNR2	19	84	MT-CO1	1642	chrM:6545:+	MT-RNR2	5587	chrM:1715:+	INCL_NON_REF_SPLICE	YES	33637	0	0	1	0.298	1.3174	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	1	1.6154	FALSE	44	51	6	21	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-CO1--MT-RNR2	23	62	MT-CO1	1635	chrM:6538:+	MT-RNR2	5554	chrM:1682:+	INCL_NON_REF_SPLICE	YES	32889	0	0	1	0.3607	0.9724	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	1	1.3331	FALSE	44	51	6	21	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-CO1--MT-RNR2	3	109	MT-CO1	1965	chrM:6868:+	MT-RNR2	5605	chrM:1733:+	INCL_NON_REF_SPLICE	YES	34054	0	0	1	0.047	1.7095	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	1	1.7565	FALSE	44	51	6	21	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-CO1--MT-RNR2	14	54	MT-CO1	1653	chrM:6556:+	MT-RNR2	6094	chrM:2222:+	INCL_NON_REF_SPLICE	YES	35061	17919	0	0	0.2196	0.8469	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	0	1.0665	FALSE	44	51	6	21	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ATP6--MT-CO1	23	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3607	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PRECLH_PROSTATE	1	1	0.3607	FALSE	183	104	9	328	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-TA--MT-TC	22	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.345	0.047	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PRECLH_PROSTATE	1	1	0.392	FALSE	462	80	0	856	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND5--MT-RNR2	9	50	MT-ND5	2641	chrM:13977:+	MT-RNR2	5820	chrM:1678:+	INCL_NON_REF_SPLICE	YES	2689	0	0.02	1	0.1411	0.7842	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0.02	1	0.9253	FALSE	4	13	1	9	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND5--MT-RNR2	7	55	MT-ND5	2718	chrM:14054:+	MT-RNR2	5841	chrM:1699:+	INCL_NON_REF_SPLICE	YES	16	0	0.79	1	0.1098	0.8626	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0.79	1	0.9724	FALSE	4	13	1	9	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	20	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	10764	7	0	0.75	0.3137	0.0157	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	0.75	0.3294	FALSE	230	193	14	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-CO1--MT-RNR2	9	43	MT-CO1	1617	chrM:6520:+	MT-RNR2	5563	chrM:1691:+	INCL_NON_REF_SPLICE	YES	30220	0	0	1	0.1411	0.6744	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	1	0.8155	FALSE	44	51	6	21	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ATP6--MT-CO1	18	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9245	34665	0	0	0.2823	0.0157	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PRECLH_PROSTATE	0	0	0.298	FALSE	183	104	9	328	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-CO1--MT-RNR2	9	37	MT-CO1	1638	chrM:6541:+	MT-RNR2	6078	chrM:2206:+	INCL_NON_REF_SPLICE	YES	33295	17121	0	0	0.1411	0.5803	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	0	0.7214	FALSE	44	51	6	21	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	18	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10840	8	0	0.7	0.2823	0.0157	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	0.7	0.298	FALSE	230	198	14	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND5--MT-RNR2	3	60	MT-ND5	2800	chrM:14136:+	MT-RNR2	5820	chrM:1678:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.047	0.941	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	1	1	0.988	FALSE	4	13	1	9	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-CO1--MT-RNR2	3	57	MT-CO1	1980	chrM:6883:+	MT-RNR2	6135	chrM:2263:+	INCL_NON_REF_SPLICE	YES	32341	17373	0	0	0.047	0.8939	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	0	0.9409	FALSE	44	51	6	21	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-CO1--MT-RNR2	3	55	MT-CO1	1782	chrM:6685:+	MT-RNR2	6127	chrM:2255:+	INCL_NON_REF_SPLICE	YES	36650	17636	0	0	0.047	0.8626	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	0	0.9096	FALSE	44	51	6	21	0	FALSE	ACH-000170
PRECLH_PROSTATE	SLC7A5--MT-ND4L	11	23	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	4761	0	0.01	1	0.1725	0.3607	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PRECLH_PROSTATE	0.01	1	0.5332	FALSE	0	0	0	23	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-CO1--MT-RNR2	11	20	MT-CO1	1536	chrM:6439:+	MT-RNR2	6107	chrM:2235:+	INCL_NON_REF_SPLICE	YES	30620	17626	0	0	0.1725	0.3137	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	0	0.4862	FALSE	44	51	6	21	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND5--MT-RNR2	3	50	MT-ND5	2647	chrM:13983:+	MT-RNR2	5832	chrM:1690:+	INCL_NON_REF_SPLICE	YES	2477	0	0.02	1	0.047	0.7842	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0.02	1	0.8312	FALSE	4	13	1	9	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND5--MT-RNR2	7	33	MT-ND5	2813	chrM:14149:+	MT-RNR2	6390	chrM:2248:+	INCL_NON_REF_SPLICE	YES	0	17134	1	0	0.1098	0.5175	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	1	0.6273	FALSE	4	13	1	9	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-CO1--MT-RNR2	3	42	MT-CO1	1646	chrM:6549:+	MT-RNR2	6130	chrM:2258:+	INCL_NON_REF_SPLICE	YES	34469	17450	0	0	0.047	0.6587	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	0	0.7057	FALSE	44	51	6	21	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND5--MT-RNR2	3	40	MT-ND5	2509	chrM:13845:+	MT-RNR2	5832	chrM:1690:+	INCL_NON_REF_SPLICE	YES	4117	0	0.01	1	0.047	0.6273	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0.01	1	0.6743	FALSE	4	14	1	9	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-CO1--MT-RNR2	9	15	MT-CO1	1446	chrM:6349:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	29984	0	0	1	0.1411	0.2352	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	1	0.3763	FALSE	44	51	6	21	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ATP6--MT-CO2	11	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	42	5	0.29	0.77	0.1725	0.0941	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PRECLH_PROSTATE	0.29	0.77	0.2666	FALSE	59	21	0	114	0	FALSE	ACH-000170
PRECLH_PROSTATE	C15orf57--CBX3	11	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	10	11	0.62	0.59	0.1725	0.0784	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PRECLH_PROSTATE	0.59	0.62	0.2509	TRUE	267	562	48	632	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND5--MT-RNR2	3	37	MT-ND5	2317	chrM:13653:+	MT-RNR2	5841	chrM:1699:+	INCL_NON_REF_SPLICE	YES	4035	0	0.01	1	0.047	0.5803	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0.01	1	0.6273	FALSE	4	14	1	9	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND5--MT-RNR2	3	36	MT-ND5	2251	chrM:13587:+	MT-RNR2	5849	chrM:1707:+	INCL_NON_REF_SPLICE	YES	4791	0	0.01	1	0.047	0.5646	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0.01	1	0.6116	FALSE	4	14	1	9	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND5--MT-RNR2	3	34	MT-ND5	2777	chrM:14113:+	MT-RNR2	6358	chrM:2216:+	INCL_NON_REF_SPLICE	YES	0	17860	1	0	0.047	0.5332	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	1	0.5802	FALSE	4	13	1	9	0	FALSE	ACH-000170
PRECLH_PROSTATE	RP11-680G10.1--GSE1	11	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	17	1	0.43	0.1725	0.0314	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PRECLH_PROSTATE	0.43	1	0.2039	TRUE	465	1949	224	605	0	FALSE	ACH-000170
PRECLH_PROSTATE	SLC1A5--MT-ND4L	11	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1285	0	0.01	1	0.1725	0.0157	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PRECLH_PROSTATE	0.01	1	0.1882	FALSE	0	0	0	189	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-CO1--MT-RNR2	3	32	MT-CO1	1546	chrM:6449:+	MT-RNR2	5566	chrM:1694:+	INCL_NON_REF_SPLICE	YES	30732	0	0	1	0.047	0.5019	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	1	0.5489	FALSE	44	51	6	21	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-CO1--MT-RNR2	3	31	MT-CO1	1628	chrM:6531:+	MT-RNR2	6116	chrM:2244:+	INCL_NON_REF_SPLICE	YES	31987	17256	0	0	0.047	0.4862	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	0	0.5332	FALSE	44	51	6	21	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND5--MT-RNR2	6	18	MT-ND5	1627	chrM:12963:+	MT-RNR2	5825	chrM:1683:+	INCL_NON_REF_SPLICE	YES	6782	0	0	1	0.0941	0.2823	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	1	0.3764	FALSE	3	12	1	7	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ATP6--MT-CO2	8	8	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	42	3	0.28	0.84	0.1255	0.1255	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PRECLH_PROSTATE	0.28	0.84	0.251	FALSE	59	21	0	114	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	8	8	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	15333	0	0	1	0.1255	0.1255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	1	0.251	FALSE	231	217	16	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND5--MT-RNR2	5	20	MT-ND5	1735	chrM:13071:+	MT-RNR2	5832	chrM:1690:+	INCL_NON_REF_SPLICE	YES	5173	0	0	1	0.0784	0.3137	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	1	0.3921	FALSE	3	14	1	9	0	FALSE	ACH-000170
PRECLH_PROSTATE	RP11-123O10.4--GRIP1	9	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1411	0.0157	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PRECLH_PROSTATE	1	1	0.1568	FALSE	416	2512	207	587	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	5	16	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3402	64	0.01	0.25	0.0784	0.2509	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0.01	0.25	0.3293	FALSE	218	210	16	281	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	6	12	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12834	64	0	0.22	0.0941	0.1882	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	0.22	0.2823	FALSE	231	217	16	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	8	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12756	8	0	0.56	0.1255	0.0314	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	0.56	0.1569	FALSE	231	205	14	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND5--MT-RNR2	3	21	MT-ND5	1787	chrM:13123:+	MT-RNR2	5836	chrM:1694:+	INCL_NON_REF_SPLICE	YES	4864	0	0	1	0.047	0.3293	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	1	0.3763	FALSE	3	14	1	9	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	6	8	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	15417	0	0	1	0.0941	0.1255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	1	0.2196	FALSE	231	217	16	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	4	15	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	13786	0	0	1	0.0627	0.2352	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	1	0.2979	FALSE	231	217	16	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ATP6--MT-CO2	6	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	42	5	0.22	0.71	0.0941	0.0941	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PRECLH_PROSTATE	0.22	0.71	0.1882	FALSE	59	21	0	114	0	FALSE	ACH-000170
PRECLH_PROSTATE	RP4-565E6.1--HYDIN	6	5	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0941	0.0784	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	PRECLH_PROSTATE	1	1	0.1725	TRUE	456	1387	91	133	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ATP6--MT-CO1	5	8	MT-ATP6	1408	chrM:8934:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	11237	35253	0	0	0.0784	0.1255	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PRECLH_PROSTATE	0	0	0.2039	FALSE	183	104	9	328	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	7	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1098	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	1	1	0.1098	FALSE	231	204	14	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	3	15	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	13688	0	0	1	0.047	0.2352	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	1	0.2822	FALSE	231	217	16	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0941	0.047	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PRECLH_PROSTATE	1	1	0.1411	FALSE	462	80	0	856	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-CO1--MT-RNR2	4	10	MT-CO1	1453	chrM:6356:+	MT-RNR2	6134	chrM:2262:+	INCL_NON_REF_SPLICE	YES	29569	17332	0	0	0.0627	0.1568	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	0	0.2195	FALSE	44	51	6	21	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	6	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10880	64	0	0.1	0.0941	0.0157	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	0.1	0.1098	FALSE	230	198	14	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	4	9	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	13583	1423	0	0.01	0.0627	0.1411	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	0.01	0.2038	FALSE	231	217	16	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0941	0.0157	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PRECLH_PROSTATE	1	1	0.1098	FALSE	462	80	0	856	0	FALSE	ACH-000170
PRECLH_PROSTATE	SLC1A5--MT-ND4L	6	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1267	0	0.01	1	0.0941	0.0157	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PRECLH_PROSTATE	0.01	1	0.1098	FALSE	0	0	0	189	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ATP6--MT-CO2	6	0	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0941	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PRECLH_PROSTATE	1	1	0.0941	FALSE	59	21	0	114	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND5--MT-RNR2	3	12	MT-ND5	1789	chrM:13125:+	MT-RNR2	6357	chrM:2215:+	INCL_NON_REF_SPLICE	YES	4837	17823	0	0	0.047	0.1882	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	0	0.2352	FALSE	3	14	1	9	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-CO1--MT-RNR2	3	11	MT-CO1	1480	chrM:6383:+	MT-RNR2	6057	chrM:2185:+	INCL_NON_REF_SPLICE	YES	30652	16944	0	0	0.047	0.1725	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	0	0.2195	FALSE	44	51	6	21	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND5--MT-RNR2	3	11	MT-ND5	1844	chrM:13180:+	MT-RNR2	6418	chrM:2276:+	INCL_NON_REF_SPLICE	YES	6679	16783	0	0	0.047	0.1725	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PRECLH_PROSTATE	0	0	0.2195	FALSE	4	14	1	9	0	FALSE	ACH-000170
PRECLH_PROSTATE	RP11-680G10.1--GSE1	5	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	12	1	0.4	0.0784	0.047	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PRECLH_PROSTATE	0.4	1	0.1254	TRUE	458	1351	185	561	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	4	6	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	12834	1869	0	0.01	0.0627	0.0941	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	0.01	0.1568	FALSE	231	217	16	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ATP6--MT-CO1	4	5	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	10657	30744	0	0	0.0627	0.0784	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PRECLH_PROSTATE	0	0	0.1411	FALSE	183	104	9	328	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	5	1	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	12680	978	0	0.01	0.0784	0.0157	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	0.01	0.0941	FALSE	231	205	14	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	3	8	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	16020	0	0	1	0.047	0.1255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	1	0.1725	FALSE	231	217	16	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	3	8	MT-ND4	1426	chrM:11185:+	MT-ATP8	5383	chrM:8370:+	INCL_NON_REF_SPLICE	NO	16332	0	0	1	0.047	0.1255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	1	0.1725	FALSE	231	217	16	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	hsa-mir-6723--MTND2P28	5	0	hsa-mir-6723	1567	chr1:567020:+	MTND2P28	5598	chr1:565074:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0784	0	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	PRECLH_PROSTATE	1	1	0.0784	TRUE	2	1	0	4	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	3	7	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	16024	0	0	1	0.047	0.1098	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	1	0.1568	FALSE	231	217	16	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	3	7	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	15346	0	0	1	0.047	0.1098	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	1	0.1568	FALSE	231	217	16	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-TA--MT-TC	3	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.047	0.0784	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PRECLH_PROSTATE	1	1	0.1254	FALSE	462	80	0	856	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1063	chrM:8589:+	MT-CO1	5236	chrM:6458:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PRECLH_PROSTATE	1	1	0.0627	FALSE	183	104	9	328	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ATP6--MT-CO2	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PRECLH_PROSTATE	1	1	0.0627	FALSE	59	21	0	114	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	3	4	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	17141	658	0	0.01	0.047	0.0627	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	0.01	0.1097	FALSE	231	217	16	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	4	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	1	1	0.0627	FALSE	231	205	14	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ATP6--MT-CO1	3	3	MT-ATP6	1136	chrM:8662:+	MT-CO1	5337	chrM:6559:+	INCL_NON_REF_SPLICE	YES	9648	35100	0	0	0.047	0.047	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PRECLH_PROSTATE	0	0	0.094	FALSE	183	104	9	328	0	FALSE	ACH-000170
PRECLH_PROSTATE	RP11-120D5.1--MID1	3	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	14	0.75	0.3	0.047	0.047	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PRECLH_PROSTATE	0.3	0.75	0.094	FALSE	16	356	14	466	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	3	2	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	14363	0	0	1	0.047	0.0314	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	1	0.0784	FALSE	231	205	14	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5332	chrM:6554:+	INCL_NON_REF_SPLICE	YES	9245	35079	0	0	0.047	0.0157	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PRECLH_PROSTATE	0	0	0.0627	FALSE	183	104	9	328	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	3	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	10900	86	0	0.04	0.047	0.0157	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	0.04	0.0627	FALSE	231	204	14	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ND4--MT-ATP8	3	1	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	15870	1423	0	0	0.047	0.0157	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PRECLH_PROSTATE	0	0	0.0627	FALSE	231	205	14	283	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.047	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PRECLH_PROSTATE	1	1	0.047	FALSE	183	104	9	328	0	FALSE	ACH-000170
PRECLH_PROSTATE	MT-ATP6--MT-CO2	3	0	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.047	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PRECLH_PROSTATE	1	1	0.047	FALSE	59	21	0	114	0	FALSE	ACH-000170
PRECLH_PROSTATE	hsa-mir-6723--MTND2P28	3	0	hsa-mir-6723	1554	chr1:567007:+	MTND2P28	5588	chr1:565064:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.047	0	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	PRECLH_PROSTATE	1	1	0.047	TRUE	2	1	0	4	0	FALSE	ACH-000170
PRECLH_PROSTATE	RP4-565E6.1--HYDIN	2	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	7	1	0.42	0.0314	0.047	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	PRECLH_PROSTATE	0.42	1	0.0784	TRUE	84	87	4	41	0	FALSE	ACH-000170
PRECLH_PROSTATE	CD44--PDHX	2	0	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	PRECLH_PROSTATE	1	1	0.0314	TRUE	0	20	0	35	2	FALSE	ACH-000170
PRECLH_PROSTATE	RP11-120D5.1--MID1	1	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	2	4	0.67	0.5	0.0157	0.047	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PRECLH_PROSTATE	0.5	0.67	0.0627	FALSE	0	23	1	67	0	FALSE	ACH-000170
PRECLH_PROSTATE	GPR126--VTA1	1	1	GPR126	2987	chr6:142630781:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	YES	280	55	0.01	0.04	0.0157	0.0157	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	PRECLH_PROSTATE	0.01	0.04	0.0314	FALSE	0	2	0	15	1	FALSE	ACH-000170
PRECLH_PROSTATE	LAMB3--FLNB	1	1	LAMB3	6436	chr1:209807792:-	FLNB	39634	chr3:58095737:+	ONLY_REF_SPLICE	YES	6169	637	0	0	0.0157	0.0157	LAMB3->chr1:209788215-209825811:-,laminin_subunit_beta_3,FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B	PRECLH_PROSTATE	0	0	0.0314	FALSE	0	0	0	1	0	FALSE	ACH-000170
OV7_OVARY	TIMM23B--LINC00843	107	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4322	0.3346	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OV7_OVARY	1	1	1.7668	TRUE	508	994	45	981	0	FALSE	ACH-000688
OV7_OVARY	CSNK1G1--DAPK2	97	54	CSNK1G1	1256	chr15:64648187:-	DAPK2	36022	chr15:64222654:-	ONLY_REF_SPLICE	YES	10	3	0.94	0.98	1.2984	0.7228	NEIGHBORS[93484],CSNK1G1->casein_kinase_1_gamma_1,chr15:64457716-64648442:-,DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2	OV7_OVARY	0.94	0.98	2.0212	FALSE	0	0	0	1	0	FALSE	ACH-000688
OV7_OVARY	TIMM23--RP11-464F9.1	60	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	347	5	0.15	0.92	0.8031	0.0134	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OV7_OVARY	0.15	0.92	0.8165	TRUE	519	3926	326	965	0	FALSE	ACH-000688
OV7_OVARY	OR51S1--TP53I11	38	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5086	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	OV7_OVARY	1	1	0.5086	TRUE	402	216	10	229	0	FALSE	ACH-000688
OV7_OVARY	SAE1--RP11-100G15.7	31	9	SAE1	3734	chr19:47634285:+	RP11-100G15.7	21857	chr9:94896210:+	ONLY_REF_SPLICE	YES	459	2	0.08	0.95	0.4149	0.1205	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,RP11-100G15.7->chr9:94894680-94900911:+	OV7_OVARY	0.08	0.95	0.5354	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	ZC3H4--RP11-100G15.10	31	2	ZC3H4	2475	chr19:47615405:-	RP11-100G15.10	22470	chr9:94919726:-	INCL_NON_REF_SPLICE	YES	7	0	0.82	1	0.4149	0.0268	ZC3H4->chr19:47567444-47617009:-,zinc_finger_CCCH-type_containing_4,RP11-100G15.10->chr9:94912664-94919727:-	OV7_OVARY	0.82	1	0.4417	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	MT-TA--MT-TC	25	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3346	0.0803	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OV7_OVARY	1	1	0.4149	FALSE	462	80	0	856	0	FALSE	ACH-000688
OV7_OVARY	IGFBP4--NPM1	20	5	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	4490	2	0.01	0.93	0.2677	0.0669	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	OV7_OVARY	0.01	0.93	0.3346	TRUE	0	0	0	38	0	FALSE	ACH-000688
OV7_OVARY	ZC3H4--RP11-100G15.10	19	5	ZC3H4	3537	chr19:47614152:-	RP11-100G15.10	22470	chr9:94919726:-	INCL_NON_REF_SPLICE	YES	16	0	0.6	1	0.2543	0.0669	ZC3H4->chr19:47567444-47617009:-,zinc_finger_CCCH-type_containing_4,RP11-100G15.10->chr9:94912664-94919727:-	OV7_OVARY	0.6	1	0.3212	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	MT-ND6--MT-TE	14	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.1874	0.1472	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV7_OVARY	0.93	1	0.3346	FALSE	499	1288	110	792	0	FALSE	ACH-000688
OV7_OVARY	MT-ND6--MT-TE	16	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2142	0.0402	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV7_OVARY	1	1	0.2544	FALSE	499	1288	110	792	0	FALSE	ACH-000688
OV7_OVARY	MT-ND6--MT-TE	15	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2008	0.0402	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV7_OVARY	1	1	0.241	FALSE	499	1288	110	792	0	FALSE	ACH-000688
OV7_OVARY	EIF2AK2--CEBPZ	13	10	EIF2AK2	13936	chr2:37347102:-	CEBPZ	42117	chr2:37430151:-	ONLY_REF_SPLICE	YES	81	58	0.22	0.28	0.174	0.1339	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:-:[44547],EIF2AK2->Oncogene{Bushman},chr2:37326353-37384208:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_2,CEBPZ->CCAAT/enhancer_binding_protein_zeta,chr2:37428755-37458856:-	OV7_OVARY	0.22	0.28	0.3079	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	SAE1--RP11-100G15.7	11	9	SAE1	3734	chr19:47634285:+	RP11-100G15.7	20581	chr9:94894902:+	ONLY_REF_SPLICE	YES	459	0	0.04	1	0.1472	0.1205	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,RP11-100G15.7->chr9:94894680-94900911:+	OV7_OVARY	0.04	1	0.2677	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	ZC3H4--RP11-100G15.10	9	1	ZC3H4	2199	chr19:47615681:-	RP11-100G15.10	22470	chr9:94919726:-	INCL_NON_REF_SPLICE	YES	3	0	0.77	1	0.1205	0.0134	ZC3H4->chr19:47567444-47617009:-,zinc_finger_CCCH-type_containing_4,RP11-100G15.10->chr9:94912664-94919727:-	OV7_OVARY	0.77	1	0.1339	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	MT-ND6--MT-TE	5	15	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.0669	0.2008	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV7_OVARY	0.91	1	0.2677	FALSE	499	1288	110	792	0	FALSE	ACH-000688
OV7_OVARY	PLXNB2--MT2A	8	2	PLXNB2	4885	chr22:50728393:-	MT2A	23273	chr16:56642513:+	INCL_NON_REF_SPLICE	YES	269	5	0.04	0.67	0.1071	0.0268	PLXNB2->chr22:50713408-50746056:-,plexin_B2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	OV7_OVARY	0.04	0.67	0.1339	TRUE	0	0	0	5	0	TRUE	ACH-000688
OV7_OVARY	FN1--MT2A	8	0	FN1	32147	chr2:216248789:-	MT2A	56098	chr16:56643273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1071	0	GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT2A->chr16:56642111-56643409:+,metallothionein_2A	OV7_OVARY	1	1	0.1071	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	IGFBP4--S100A6	8	0	IGFBP4	3668	chr17:38610269:+	S100A6	9247	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1071	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	OV7_OVARY	1	1	0.1071	TRUE	0	0	0	4	0	TRUE	ACH-000688
OV7_OVARY	AP000350.4--PKM	5	8	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	4	1	0.76	0.0669	0.1071	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	OV7_OVARY	0.76	1	0.174	TRUE	0	0	0	14	0	TRUE	ACH-000688
OV7_OVARY	LGALS3BP--ACTB	7	0	LGALS3BP	4091	chr17:76972129:-	ACTB	17100	chr7:5568161:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0937	0	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	OV7_OVARY	1	1	0.0937	TRUE	0	0	0	2	0	TRUE	ACH-000688
OV7_OVARY	FN1--S100A6	6	2	FN1	12522	chr2:216285405:-	S100A6	55189	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	12892	5	0	0.62	0.0803	0.0268	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	OV7_OVARY	0	0.62	0.1071	TRUE	0	0	0	7	0	FALSE	ACH-000688
OV7_OVARY	ITGA3--TUBB	6	1	ITGA3	12301	chr17:48153818:+	TUBB	28691	chr6:30691270:+	INCL_NON_REF_SPLICE	YES	1919	4384	0	0	0.0803	0.0134	ITGA3->chr17:48133332-48167845:+,integrin_subunit_alpha_3,TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I	OV7_OVARY	0	0	0.0937	FALSE	0	0	0	5	0	FALSE	ACH-000688
OV7_OVARY	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0803	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	OV7_OVARY	1	1	0.0803	TRUE	458	1351	185	561	0	FALSE	ACH-000688
OV7_OVARY	EVI5--GFI1	5	2	EVI5	4684	chr1:93201955:-	GFI1	34981	chr1:92949143:-	ONLY_REF_SPLICE	YES	22	0	0.24	1	0.0669	0.0268	NEIGHBORS[21820],EVI5->chr1:92974253-93257961:-,ecotropic_viral_integration_site_5,GFI1->Oncogene{Bushman},chr1:92940319-92952433:-,growth_factor_independent_1_transcription_repressor	OV7_OVARY	0.24	1	0.0937	FALSE	0	1	0	1	0	FALSE	ACH-000688
OV7_OVARY	FN1--MT2A	5	2	FN1	22053	chr2:216264003:-	MT2A	55328	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	10116	5	0	0.58	0.0669	0.0268	GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT2A->chr16:56642111-56643409:+,metallothionein_2A	OV7_OVARY	0	0.58	0.0937	FALSE	0	0	0	1	0	FALSE	ACH-000688
OV7_OVARY	NSF--LRRC37A2	4	6	NSF	15332	chr17:44782220:+	LRRC37A2	28875	chr17:44588877:+	ONLY_REF_SPLICE	YES	111	0	0.08	1	0.0535	0.0803	LOCAL_REARRANGEMENT:+:[35019],NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	OV7_OVARY	0.08	1	0.1338	TRUE	1	0	0	3	0	TRUE	ACH-000688
OV7_OVARY	IGFBP4--NPM1	4	5	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	4566	3	0	0.75	0.0535	0.0669	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	OV7_OVARY	0	0.75	0.1204	TRUE	0	0	0	38	0	FALSE	ACH-000688
OV7_OVARY	MT-TA--MT-TC	4	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0535	0.0669	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OV7_OVARY	1	1	0.1204	FALSE	462	80	0	856	0	FALSE	ACH-000688
OV7_OVARY	COL8A1--CMSS1	4	4	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	551	262	0.01	0.03	0.0535	0.0535	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	OV7_OVARY	0.01	0.03	0.107	FALSE	76	19	3	26	0	FALSE	ACH-000688
OV7_OVARY	MYH9--MT2A	4	3	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	1450	5	0	0.58	0.0535	0.0402	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	OV7_OVARY	0	0.58	0.0937	FALSE	0	0	0	24	0	FALSE	ACH-000688
OV7_OVARY	APP--MT-ND2	4	0	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0535	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OV7_OVARY	1	1	0.0535	FALSE	0	1	0	51	0	FALSE	ACH-000688
OV7_OVARY	ARHGEF10--GNAS	4	0	ARHGEF10	3311	chr8:1791602:+	GNAS	58952	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0535	0	ARHGEF10->Rho_guanine_nucleotide_exchange_factor_10,chr8:1772142-1906807:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	OV7_OVARY	1	1	0.0535	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	MT-TA--MT-TC	3	4	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0.0535	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OV7_OVARY	1	1	0.0937	FALSE	462	80	0	856	0	FALSE	ACH-000688
OV7_OVARY	FN1--S100A6	3	3	FN1	12528	chr2:216285399:-	S100A6	55195	chr1:153508461:-	INCL_NON_REF_SPLICE	YES	13359	6	0	0.5	0.0402	0.0402	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	OV7_OVARY	0	0.5	0.0804	FALSE	0	0	0	7	0	FALSE	ACH-000688
OV7_OVARY	SAE1--RP11-100G15.7	1	11	SAE1	3818	chr19:47634369:+	RP11-100G15.7	21857	chr9:94896210:+	ONLY_REF_SPLICE	YES	542	2	0.02	0.86	0.0134	0.1472	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,RP11-100G15.7->chr9:94894680-94900911:+	OV7_OVARY	0.02	0.86	0.1606	TRUE	0	0	0	1	0	FALSE	ACH-000688
OV7_OVARY	SAE1--RP11-100G15.7	3	3	SAE1	3689	chr19:47634240:+	RP11-100G15.7	21893	chr9:94896246:+	INCL_NON_REF_SPLICE	YES	126	3	0.05	0.67	0.0402	0.0402	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,RP11-100G15.7->chr9:94894680-94900911:+	OV7_OVARY	0.05	0.67	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	TIMP1--FN1	3	2	TIMP1	3563	chrX:47444673:+	FN1	46115	chr2:216241397:-	INCL_NON_REF_SPLICE	NO	5404	16468	0	0	0.0402	0.0268	TIMP1->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_1,chrX:47441712-47446188:+,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	OV7_OVARY	0	0	0.067	FALSE	0	0	0	1	0	FALSE	ACH-000688
OV7_OVARY	MAP2K1--MAP2K5	3	1	MAP2K1	6099	chr15:66737045:+	MAP2K5	34867	chr15:67950891:+	ONLY_REF_SPLICE	YES	240	20	0.02	0.17	0.0402	0.0134	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},HGNC_GENEFAM,PROTCLUST,MAP2K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr15:66679155-66784650:+,mitogen-activated_protein_kinase_kinase_1,MAP2K5->Oncogene{Bushman},chr15:67835047-68099461:+,mitogen-activated_protein_kinase_kinase_5	OV7_OVARY	0.02	0.17	0.0536	TRUE	0	0	0	1	0	FALSE	ACH-000688
OV7_OVARY	RPSAP52--HMGA2	3	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	21	274	0.16	0.01	0.0402	0.0134	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	OV7_OVARY	0.01	0.16	0.0536	FALSE	0	59	0	125	0	FALSE	ACH-000688
OV7_OVARY	FTH1--ACTG1	3	0	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	OV7_OVARY	1	1	0.0402	TRUE	0	0	0	64	0	FALSE	ACH-000688
OV7_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV7_OVARY	1	1	0.0402	FALSE	499	1288	110	792	0	FALSE	ACH-000688
OV7_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV7_OVARY	1	1	0.0402	FALSE	499	1288	110	792	0	FALSE	ACH-000688
OV7_OVARY	TIMP1--FN1	3	0	TIMP1	2184	chrX:47442895:+	FN1	49816	chr2:216236894:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	TIMP1->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_1,chrX:47441712-47446188:+,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	OV7_OVARY	1	1	0.0402	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	VIM-AS1--RPL23	3	0	VIM-AS1	1640	chr10:17271345:-	RPL23	10538	chr17:37009353:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23	OV7_OVARY	1	1	0.0402	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	NRIP1--AF127936.7	2	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.0268	0.0402	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OV7_OVARY	0.36	1	0.067	FALSE	125	705	46	456	0	FALSE	ACH-000688
OV7_OVARY	NSF--LRRC37A2	2	3	NSF	15332	chr17:44782220:+	LRRC37A2	33686	chr17:44594728:+	ONLY_REF_SPLICE	YES	111	5	0.04	0.5	0.0268	0.0402	LOCAL_REARRANGEMENT:+:[35019],NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	OV7_OVARY	0.04	0.5	0.067	TRUE	1	0	0	3	0	TRUE	ACH-000688
OV7_OVARY	COL8A1--CMSS1	2	2	COL8A1	12080	chr3:99463865:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	824	262	0	0.02	0.0268	0.0268	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	OV7_OVARY	0	0.02	0.0536	FALSE	4	4	0	17	0	FALSE	ACH-000688
OV7_OVARY	RP1-34H18.1--NAV3	2	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0.0134	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	OV7_OVARY	1	1	0.0402	TRUE	254	575	65	124	0	FALSE	ACH-000688
OV7_OVARY	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0268	0.0134	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OV7_OVARY	0.75	1	0.0402	FALSE	407	2205	196	549	0	FALSE	ACH-000688
OV7_OVARY	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0268	0.0134	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OV7_OVARY	0.75	1	0.0402	FALSE	192	492	57	212	0	FALSE	ACH-000688
OV7_OVARY	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0268	0.0134	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OV7_OVARY	0.75	1	0.0402	FALSE	515	4851	409	746	0	FALSE	ACH-000688
OV7_OVARY	MLF1IP--POFUT1	2	0	MLF1IP	6909	chr4:185637551:-	POFUT1	22490	chr20:30803072:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	MLF1IP->chr4:185615772-185655287:-,POFUT1->chr20:30795683-30826470:+,protein_O-fucosyltransferase_1	OV7_OVARY	1	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OV7_OVARY	1	1	0.0268	FALSE	25	145	6	90	0	FALSE	ACH-000688
OV7_OVARY	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	OV7_OVARY	1	1	0.0268	TRUE	465	1949	224	605	0	FALSE	ACH-000688
OV7_OVARY	RP4-565E6.1--HYDIN	2	0	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	OV7_OVARY	1	1	0.0268	TRUE	456	1387	91	133	0	FALSE	ACH-000688
OV7_OVARY	UBXN11--SLC19A1	2	0	UBXN11	9442	chr1:26620696:-	SLC19A1	29743	chr21:46935066:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	UBXN11->UBX_domain_protein_11,chr1:26607819-26644854:-,SLC19A1->Oncogene{Bushman},chr21:46913486-46964325:-,solute_carrier_family_19_member_1	OV7_OVARY	1	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000688
OV7_OVARY	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.24	1	0.0134	0.0402	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OV7_OVARY	0.24	1	0.0536	FALSE	164	806	69	479	0	FALSE	ACH-000688
OV7_OVARY	TFDP1--TMCO3	1	2	TFDP1	4660	chr13:114277601:+	TMCO3	24219	chr13:114164553:+	ONLY_REF_SPLICE	YES	426	143	0.01	0.02	0.0134	0.0268	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[34471],TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	OV7_OVARY	0.01	0.02	0.0402	FALSE	0	2	0	1	2	FALSE	ACH-000688
OV7_OVARY	BAZ2B--MARCH7	1	1	BAZ2B	1451	chr2:160472753:-	MARCH7	64626	chr2:160585520:+	ONLY_REF_SPLICE	YES	3	84	0.4	0.02	0.0134	0.0134	GTEx_v2:{count=4;pct=0.05%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1},LOCAL_INVERSION:-:+:[95797],BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-,MARCH7->chr2:160569000-160627538:+,membrane_associated_ring-CH-type_finger_7	OV7_OVARY	0.02	0.4	0.0268	TRUE	1	1	0	4	1	FALSE	ACH-000688
OV7_OVARY	DST--PRIM2	1	1	DST	75671	chr6:56416982:-	PRIM2	146564	chr6:57467080:+	ONLY_REF_SPLICE	YES	114	67	0.02	0.03	0.0134	0.0134	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Heart_-_Left_Ventricle=1},DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	OV7_OVARY	0.02	0.03	0.0268	TRUE	0	0	0	1	0	FALSE	ACH-000688
OV7_OVARY	EPS8--DUSP16	1	1	EPS8	3576	chr12:15942095:-	DUSP16	39154	chr12:12674397:-	ONLY_REF_SPLICE	NO	89	0	0.02	1	0.0134	0.0134	EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,DUSP16->chr12:12628829-12715317:-,dual_specificity_phosphatase_16	OV7_OVARY	0.02	1	0.0268	TRUE	0	0	0	1	0	FALSE	ACH-000688
OV7_OVARY	EVI5--GFI1	1	1	EVI5	2332	chr1:93250393:-	GFI1	38445	chr1:92944310:-	ONLY_REF_SPLICE	YES	36	1	0.05	0.67	0.0134	0.0134	NEIGHBORS[21820],EVI5->chr1:92974253-93257961:-,ecotropic_viral_integration_site_5,GFI1->Oncogene{Bushman},chr1:92940319-92952433:-,growth_factor_independent_1_transcription_repressor	OV7_OVARY	0.05	0.67	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000688
OV7_OVARY	FLNA--TXN2	1	1	FLNA	16147	chrX:153582519:-	TXN2	26018	chr22:36876834:-	ONLY_REF_SPLICE	NO	2548	122	0	0.02	0.0134	0.0134	FLNA->chrX:153576892-153603006:-,filamin_A,TXN2->chr22:36863083-36878077:-,thioredoxin_2	OV7_OVARY	0	0.02	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000688
OV7_OVARY	RP11-254I22.1--CTD-2337A12.1	1	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0134	0.0134	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	OV7_OVARY	1	1	0.0268	TRUE	6	15	3	35	0	FALSE	ACH-000688
OV7_OVARY	TFDP1--TMCO3	1	1	TFDP1	4660	chr13:114277601:+	TMCO3	27902	chr13:114193672:+	ONLY_REF_SPLICE	NO	426	174	0	0.01	0.0134	0.0134	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[34471],TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	OV7_OVARY	0	0.01	0.0268	FALSE	0	2	0	2	0	FALSE	ACH-000688
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--IGKJ4	2888	43	IGKV3-20	1587	chr2:89442057:-	IGKJ4	4588	chr2:89160434:-	ONLY_REF_SPLICE	YES	0	0	1	1	34.9268	0.52	GTEx_FI:{Thyroid=[count:2=pct:1.1],Whole_Blood=[count:2=pct:1.5],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},HGNC_GENEFAM,IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	35.4468	FALSE	7	316	24	1	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--AC096579.7	1336	399	IGKV3-20	1101	chr2:89442543:-	AC096579.7	7309	chr2:89157196:-	ONLY_REF_SPLICE	YES	381	1	0.82	1	16.1573	4.8254	GTEx_FI:{Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Blood=[count:2=pct:1.1],Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4],Thyroid=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6]},IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,AC096579.7->chr2:89130700-89165653:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	20.9827	TRUE	9	277	13	4	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--AC096579.7	10	2130	IGKV3-20	1533	chr2:89442111:-	AC096579.7	7518	chr2:89156987:-	INCL_NON_REF_SPLICE	NO	1	8040	1	0.21	0.1209	25.7598	GTEx_FI:{Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Blood=[count:2=pct:1.1],Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4],Thyroid=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6]},IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,AC096579.7->chr2:89130700-89165653:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	25.8807	TRUE	9	277	13	4	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--AC096579.7	57	149	IGKV3-20	1375	chr2:89442269:-	AC096579.7	7619	chr2:89156886:-	INCL_NON_REF_SPLICE	NO	4105	7182	0.05	0.03	0.6893	1.802	GTEx_FI:{Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Blood=[count:2=pct:1.1],Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4],Thyroid=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6]},IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,AC096579.7->chr2:89130700-89165653:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.05	2.4913	TRUE	9	277	13	4	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	72	27	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	13	25	0.88	0.8	0.8708	0.3265	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.88	1.1973	TRUE	181	1564	124	196	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMARCC1--PACS2	55	20	SMARCC1	2624	chr3:47814307:-	PACS2	43107	chr14:105814830:+	ONLY_REF_SPLICE	YES	69	4	0.52	0.95	0.6652	0.2419	{Klijn_CCL:Lymphoid=1},SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,PACS2->chr14:105766900-105864484:+,phosphofurin_acidic_cluster_sorting_protein_2	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.95	0.9071	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--AC096579.7	3	183	IGKV3-20	1576	chr2:89442068:-	AC096579.7	7667	chr2:89156838:-	INCL_NON_REF_SPLICE	YES	0	3375	1	0.05	0.0363	2.2132	GTEx_FI:{Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Blood=[count:2=pct:1.1],Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4],Thyroid=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6]},IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,AC096579.7->chr2:89130700-89165653:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	2.2495	TRUE	9	277	13	4	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-344E13.3--UBBP4	24	30	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2903	0.3628	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6531	TRUE	23	13	0	54	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--PARGP1	17	3	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2056	0.0363	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2419	TRUE	393	2105	140	19	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	15	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1814	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1814	TRUE	0	0	0	518	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--IGKJ4	4	43	IGKV3-20	1586	chr2:89442058:-	IGKJ4	4587	chr2:89160435:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0.52	GTEx_FI:{Thyroid=[count:2=pct:1.1],Whole_Blood=[count:2=pct:1.5],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},HGNC_GENEFAM,IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5684	FALSE	7	316	24	1	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC027612.3--AP000345.1	13	1	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1572	0.0121	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.1693	TRUE	0	0	0	11	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1451	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1451	TRUE	46	1352	75	139	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1209	0.0847	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.2056	FALSE	499	1288	110	792	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-509E10.1--RBFOX1	11	0	RP11-509E10.1	2178	chr16:6109254:+	RBFOX1	9676	chr16:6366996:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.133	0	NEIGHBORS_OVERLAP:+:+:[35979],RP11-509E10.1->chr16:6106976-6142955:+,RBFOX1->RNA_binding_protein,_fox-1_homolog_1,chr16:6069095-7763340:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.133	FALSE	1	0	0	2	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	9	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1088	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1088	FALSE	183	104	9	328	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMARCC1--PACS2	6	10	SMARCC1	2624	chr3:47814307:-	PACS2	44361	chr14:105818715:+	ONLY_REF_SPLICE	YES	69	10	0.19	0.62	0.0726	0.1209	{Klijn_CCL:Lymphoid=1},SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,PACS2->chr14:105766900-105864484:+,phosphofurin_acidic_cluster_sorting_protein_2	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.62	0.1935	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	8	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0968	0.0121	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1089	FALSE	462	80	0	856	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0847	0.0242	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1089	FALSE	499	1288	110	792	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0726	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0726	FALSE	183	104	9	328	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP2B4--ASRGL1	3	4	ATP2B4	3316	chr1:203652526:+	ASRGL1	33454	chr11:62105439:+	ONLY_REF_SPLICE	YES	8	6	0.47	0.54	0.0363	0.0484	{Klijn_CCL:Lymphoid=1},ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,ASRGL1->asparaginase_like_1,chr11:62104920-62160882:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.54	0.0847	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0.0121	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0484	FALSE	462	80	0	856	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBD	3	0	AC104389.28	1084	chr11:5526799:-	HBD	12813	chr11:5255443:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0	NEIGHBORS[69606],AC104389.28->chr11:5326206-5526882:-,HBD->chr11:5253908-5256600:-,hemoglobin_subunit_delta	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	FALSE	0	1	0	1	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARL4C--IGKV3-20	3	0	ARL4C	2232	chr2:235404466:-	IGKV3-20	8036	chr2:89442621:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	ARL4C->ADP_ribosylation_factor_like_GTPase_4C,chr2:235401685-235405697:-,IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B2M--AGO2	3	0	B2M	1137	chr15:45003811:+	AGO2	12384	chr8:141616013:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTNNBL1--THRAP3	3	0	CTNNBL1	4318	chr20:36361469:+	THRAP3	41519	chr1:36766593:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	CTNNBL1->catenin_beta_like_1,chr20:36322408-36500531:+,THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0.0484	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0726	FALSE	407	2205	196	549	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0.0484	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0726	FALSE	515	4851	409	746	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMARCC1--PACS2	2	4	SMARCC1	1504	chr3:47823093:-	PACS2	43107	chr14:105814830:+	ONLY_REF_SPLICE	YES	47	4	0.11	0.6	0.0242	0.0484	{Klijn_CCL:Lymphoid=1},SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,PACS2->chr14:105766900-105864484:+,phosphofurin_acidic_cluster_sorting_protein_2	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.6	0.0726	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF142--PTMA	3	0	ZNF142	7530	chr2:219513598:-	PTMA	20614	chr2:232573234:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	ZNF142->chr2:219502639-219524378:-,zinc_finger_protein_142,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP2B4--ASRGL1	2	3	ATP2B4	3316	chr1:203652526:+	ASRGL1	34826	chr11:62123797:+	ONLY_REF_SPLICE	YES	8	12	0.38	0.29	0.0242	0.0363	{Klijn_CCL:Lymphoid=1},ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,ASRGL1->asparaginase_like_1,chr11:62104920-62160882:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.38	0.0605	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP2B4--ASRGL1	2	1	ATP2B4	3316	chr1:203652526:+	ASRGL1	35488	chr11:62124459:+	ONLY_REF_SPLICE	YES	8	9	0.27	0.25	0.0242	0.0121	{Klijn_CCL:Lymphoid=1},ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,ASRGL1->asparaginase_like_1,chr11:62104920-62160882:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.27	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--CSTF3	2	0	AC104389.28	1084	chr11:5526799:-	CSTF3	15929	chr11:33163532:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	AC104389.28->chr11:5326206-5526882:-,CSTF3->chr11:33098734-33183917:-,cleavage_stimulation_factor_subunit_3	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--PICALM	2	0	AC131097.3	5844	chr2:242908198:+	PICALM	12733	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	AC131097.3->chr2:242823514-243020873:+,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	1	0	1	1	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASCC3--AHI1	2	0	ASCC3	14892	chr6:101214441:-	AHI1	71037	chr6:135754394:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	ASCC3->activating_signal_cointegrator_1_complex_subunit_3,chr6:100956070-101329248:-,AHI1->Abelson_helper_integration_site_1,Oncogene{Bushman},chr6:135604670-135818914:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP2B4--ASRGL1	1	4	ATP2B4	3316	chr1:203652526:+	ASRGL1	33377	chr11:62105362:+	ONLY_REF_SPLICE	YES	8	5	0.38	0.5	0.0121	0.0484	{Klijn_CCL:Lymphoid=1},ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,ASRGL1->asparaginase_like_1,chr11:62104920-62160882:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.5	0.0605	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BACH1--TRIM24	2	0	BACH1	13390	chr21:30702014:+	TRIM24	34462	chr7:138223402:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	BACH1->BTB_domain_and_CNC_homolog_1,chr21:30566392-31003071:+,TRIM24->Oncogene{Bushman},chr7:138145079-138274738:+,tripartite_motif_containing_24	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C12orf10--SOCS4	2	0	C12orf10	1577	chr12:53694046:+	SOCS4	11536	chr14:55509670:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	C12orf10->chr12:53693470-53700961:+,chromosome_12_open_reading_frame_10,SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--PDIA3	2	0	C15orf57	2548	chr15:40854971:-	PDIA3	26031	chr15:44055275:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,PDIA3->chr15:44038590-44065477:+,protein_disulfide_isomerase_family_A_member_3	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C8orf44--DDX39B	2	0	C8orf44	1087	chr8:67579936:+	DDX39B	19371	chr6:31500688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	C8orf44->chr8:67579850-67597799:+,chromosome_8_open_reading_frame_44,DDX39B->DEAD-box_helicase_39B,chr6:31497996-31510225:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CENPK--TUBGCP5	2	0	CENPK	8569	chr5:64838629:-	TUBGCP5	27286	chr15:22848875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CENPK->centromere_protein_K,chr5:64813593-64858998:-,TUBGCP5->chr15:22833395-22873892:+,tubulin_gamma_complex_associated_protein_5	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLTC--YPEL2	2	0	CLTC	1316	chr17:57697534:+	YPEL2	46435	chr17:57474462:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,YPEL2->chr17:57409050-57479090:+,yippee_like_2	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COPS6--RBM25	2	0	COPS6	1793	chr7:99687369:+	RBM25	30825	chr14:73586421:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	COPS6->COP9_signalosome_subunit_6,chr7:99686577-99689823:+,RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CORO2A--RPSA	2	0	CORO2A	7841	chr9:100894467:-	RPSA	25735	chr3:39453387:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CORO2A->Oncogene{Bushman},chr9:100883257-100954922:-,coronin_2A,RPSA->chr3:39448180-39454033:+,ribosomal_protein_SA	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DAK--FAIM3	2	0	DAK	6309	chr11:61106648:+	FAIM3	27906	chr1:207078492:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	DAK->chr11:61100682-61120767:+,FAIM3->chr1:207077731-207096592:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCLRE1B--CSDE1	2	0	DCLRE1B	1635	chr1:114448397:+	CSDE1	19836	chr1:115280693:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	DCLRE1B->DNA_cross-link_repair_1B,chr1:114447763-114456708:+,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX26B--P2RY11	2	0	DDX26B	1660	chrX:134655243:+	P2RY11	24699	chr19:10224309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	DDX26B->chrX:134654584-134716435:+,P2RY11->chr19:10222214-10226048:+,purinergic_receptor_P2Y11	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND4B--PPFIBP1	2	0	DENND4B	15426	chr1:153904680:-	PPFIBP1	34490	chr12:27802943:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	DENND4B->DENN_domain_containing_4B,chr1:153901977-153919172:-,PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DMXL1--COMMD10	2	0	DMXL1	3678	chr5:118407351:+	COMMD10	66429	chr5:115627214:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	DMXL1->Dmx_like_1,chr5:118373467-118584833:+,COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF5--C14orf2	2	0	EIF5	3574	chr14:103802454:+	C14orf2	21879	chr14:104379031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	EIF5->chr14:103799881-103811362:+,eukaryotic_translation_initiation_factor_5,C14orf2->chr14:104378625-104394606:-,chromosome_14_open_reading_frame_2	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GMFG--RNF166	2	0	GMFG	4056	chr19:39823717:-	RNF166	12832	chr16:88767826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GMFG->chr19:39818993-39833012:-,glia_maturation_factor_gamma,RNF166->chr16:88762903-88772829:-,ring_finger_protein_166	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRK6--CLPTM1L	2	0	GRK6	2354	chr5:176831558:+	CLPTM1L	25851	chr5:1330498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GRK6->G_protein-coupled_receptor_kinase_6,chr5:176830205-176869902:+,CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBE1--CSTF3	2	0	HBE1	1049	chr11:5526799:-	CSTF3	12173	chr11:33163532:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1,CSTF3->chr11:33098734-33183917:-,cleavage_stimulation_factor_subunit_3	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HCLS1--EAF2	2	0	HCLS1	1108	chr3:121379667:-	EAF2	26372	chr3:121591384:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	HCLS1->chr3:121350246-121379774:-,hematopoietic_cell-specific_Lyn_substrate_1,EAF2->ELL_associated_factor_2,chr3:121554030-121605373:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--PAPD4	2	0	IGLL5	1480	chr22:23230439:+	PAPD4	22691	chr5:78964715:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,PAPD4->PAP_associated_domain_containing_4,chr5:78907943-78982471:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITCH--ASIP	2	0	ITCH	1115	chr20:32951155:+	ASIP	35434	chr20:32848171:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1|LUAD:1|LUSC:1|OV:1],LOCAL_REARRANGEMENT:+:[93891],ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,ASIP->agouti_signaling_protein,chr20:32782375-32857150:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	2	0	1	2	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KTN1--OTX2-AS1	2	0	KTN1	9501	chr14:56086030:+	OTX2-AS1	61473	chr14:57395598:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	KTN1->Oncogene{Bushman},chr14:56025790-56168244:+,kinectin_1,OTX2-AS1->OTX2_antisense_RNA_1_(head_to_head),chr14:57279901-57618895:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LRRC61--FARSB	2	0	LRRC61	3950	chr7:150023099:+	FARSB	17315	chr2:223499260:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	LRRC61->chr7:150019728-150035239:+,leucine_rich_repeat_containing_61,FARSB->chr2:223435255-223521056:-,phenylalanyl-tRNA_synthetase_beta_subunit	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MBNL1--GMPS	2	0	MBNL1	3666	chr3:151986881:+	GMPS	32815	chr3:155621652:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,GMPS->Oncogene{Bushman},chr3:155588325-155661815:+,guanine_monophosphate_synthase	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRCAM--USP3	2	0	NRCAM	5499	chr7:107953109:-	USP3	54376	chr15:63834254:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	NRCAM->Oncogene{Bushman},chr7:107788068-108097161:-,neuronal_cell_adhesion_molecule,USP3->Oncogene{Bushman},chr15:63796793-63886839:+,ubiquitin_specific_peptidase_3	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--USP28	2	0	PROSC	2996	chr8:37623873:+	USP28	22790	chr11:113701665:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),USP28->chr11:113668596-113746292:-,ubiquitin_specific_peptidase_28	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTBP2--HMGB3	2	0	PTBP2	1208	chr1:97187428:+	HMGB3	30833	chrX:150154068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,HMGB3->chrX:150148982-150159248:+,high_mobility_group_box_3	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REL--CCT4	2	0	REL	1330	chr2:61108985:+	CCT4	32371	chr2:62099451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	REL->Oncogene{Bushman},REL_proto-oncogene,_NF-kB_subunit,chr2:61108656-61158745:+,CCT4->chaperonin_containing_TCP1_subunit_4,chr2:62095224-62115939:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFWD3--MLLT10	2	0	RFWD3	1096	chr16:74700684:-	MLLT10	45387	chr10:22002701:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RFWD3->chr16:74655292-74700779:-,ring_finger_and_WD_repeat_domain_3,MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-758M4.1--PI15	2	0	RP11-758M4.1	2222	chr8:75525175:+	PI15	17893	chr8:75756216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	NEIGHBORS[1224],RP11-758M4.1->chr8:75512010-75735548:+,PI15->chr8:75736772-75767264:+,peptidase_inhibitor_15	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	FALSE	0	0	0	4	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0.0484	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0605	FALSE	275	511	55	178	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL22--ALDH16A1	2	0	RPL22	8153	chr1:6252990:-	ALDH16A1	19823	chr19:49965141:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22,ALDH16A1->aldehyde_dehydrogenase_16_family_member_A1,chr19:49956426-49974305:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--PTMA	2	0	RPS3	2292	chr11:75111821:+	PTMA	17949	chr2:232576600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6KA5--EFCAB11	2	0	RPS6KA5	7274	chr14:91409422:-	EFCAB11	44664	chr14:90263668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RPS6KA5->chr14:91336799-91526980:-,ribosomal_protein_S6_kinase_A5,EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC16A10--CDK19	2	0	SLC16A10	1518	chr6:111409298:+	CDK19	26247	chr6:111095140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	SLC16A10->chr6:111408781-111552397:+,solute_carrier_family_16_member_10,CDK19->chr6:110931181-111137161:-,cyclin-dependent_kinase_19	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMOC1--LIMD1	2	0	SMOC1	7046	chr14:70420249:+	LIMD1	31364	chr3:45714182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	SMOC1->SPARC_related_modular_calcium_binding_1,chr14:70320848-70499083:+,LIMD1->LIM_domains_containing_1,Oncogene{Bushman},chr3:45596886-45727830:+	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM222--WASF2	2	0	TMEM222	1232	chr1:27648882:+	WASF2	12087	chr1:27755443:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	LOCAL_INVERSION:+:-:[67839],TMEM222->chr1:27648651-27662891:+,transmembrane_protein_222,WASF2->Oncogene{Bushman},WAS_protein_family_member_2,chr1:27730730-27816669:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--MTIF2	2	0	ZNF121	3783	chr19:9678324:-	MTIF2	20151	chr2:55479789:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,MTIF2->chr2:55463731-55496483:-,mitochondrial_translational_initiation_factor_2	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF736--CHMP1A	2	0	ZNF736	8361	chr7:63797360:+	CHMP1A	24290	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adipose_Tissue=[count:2=pct:0.7],Breast=[count:2=pct:1.8],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=25;pct=0.29%;dist=Thyroid=4,Cells_-_Transformed_fibroblasts=3,Breast_-_Mammary_Tissue=2,Esophagus_-_Mucosa=2,Ovary=1,Pancreas=1,Lung=1,Vagina=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Colon_-_Sigmoid=1,Testis=1,Colon_-_Transverse=1},ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	10	14	2	10	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000431.2--HP1BP3	1	1	AP000431.2	1169	chr21:20503009:+	HP1BP3	7609	chr1:21107033:-	ONLY_REF_SPLICE	YES	266	67	0.01	0.03	0.0121	0.0121	AP000431.2->chr21:20502841-20506741:+,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNIP--TIMP2	1	1	TXNIP	1584	chr1:145439052:+	TIMP2	13230	chr17:76853728:-	ONLY_REF_SPLICE	YES	559	37	0	0.05	0.0121	0.0121	TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein,TIMP2->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_2,chr17:76849059-76921469:-	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000193
KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	610	21	0	0.09	0.0121	0.0121	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0242	FALSE	6	50	7	115	0	FALSE	ACH-000193
AM38_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	198	110	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	187	2	0.62	0.99	1.8394	1.0219	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	AM38_CENTRAL_NERVOUS_SYSTEM	0.62	0.99	2.8613	TRUE	0	48	0	65	48	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	YWHAE--SMG6	186	118	YWHAE	1332	chr17:1303341:-	SMG6	41016	chr17:1989195:-	ONLY_REF_SPLICE	YES	1742	30	0.15	0.91	1.7279	1.0962	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.15	0.91	2.8241	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	SCAI--RPL35	164	90	SCAI	1874	chr9:127904912:-	RPL35	34450	chr9:127623834:-	ONLY_REF_SPLICE	YES	6	205	0.98	0.55	1.5235	0.8361	NEIGHBORS[80627],SCAI->chr9:127704887-127905785:-,suppressor_of_cancer_cell_invasion,RPL35->chr9:127620159-127624260:-,ribosomal_protein_L35	AM38_CENTRAL_NERVOUS_SYSTEM	0.55	0.98	2.3596	FALSE	0	0	0	1	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	PRCP--BCO2	160	40	PRCP	18059	chr11:82549429:-	BCO2	36373	chr11:112088484:+	ONLY_REF_SPLICE	YES	69	1	0.74	1	1.4864	0.3716	PRCP->chr11:82534544-82681626:-,prolylcarboxypeptidase,BCO2->beta-carotene_oxygenase_2,chr11:112046190-112095422:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.74	1	1.858	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	NCL--PTMA	160	1	NCL	6884	chr2:232325380:-	PTMA	22009	chr2:232576646:+	INCL_NON_REF_SPLICE	YES	1875	3173	0.08	0.05	1.4864	0.0093	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	AM38_CENTRAL_NERVOUS_SYSTEM	0.05	0.08	1.4957	TRUE	1	0	0	7	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	127	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1798	0.2973	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	1.4771	TRUE	508	994	45	981	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	113	42	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	3	0	0.98	1	1.0498	0.3902	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.98	1	1.44	TRUE	0	5	0	45	5	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	106	19	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	3	0	0.98	1	0.9847	0.1765	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.98	1	1.1612	TRUE	0	3	0	38	3	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	60	118	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	187	0	0.49	1	0.5574	1.0962	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	AM38_CENTRAL_NERVOUS_SYSTEM	0.49	1	1.6536	TRUE	0	35	0	55	35	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	NCL--PTMA	86	1	NCL	6884	chr2:232325380:-	PTMA	21452	chr2:232576089:+	INCL_NON_REF_SPLICE	YES	1875	3371	0.04	0.03	0.7989	0.0093	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	AM38_CENTRAL_NERVOUS_SYSTEM	0.03	0.04	0.8082	TRUE	1	0	0	7	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	HSPBP1--ZSWIM6	84	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7803	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.7803	TRUE	47	32	1	28	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	MAML2--YAP1	77	16	MAML2	2798	chr11:96074547:-	YAP1	24326	chr11:102094353:+	ONLY_REF_SPLICE	YES	3	137	0.97	0.4	0.7153	0.1486	MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.4	0.97	0.8639	TRUE	0	1	0	1	1	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	NCL--PTMA	80	1	NCL	6884	chr2:232325380:-	PTMA	21433	chr2:232576070:+	INCL_NON_REF_SPLICE	YES	1875	3768	0.04	0.02	0.7432	0.0093	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	AM38_CENTRAL_NERVOUS_SYSTEM	0.02	0.04	0.7525	TRUE	1	0	0	7	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	PLK4--KIAA1109	74	25	PLK4	3358	chr4:128804708:+	KIAA1109	76703	chr4:123222455:+	ONLY_REF_SPLICE	YES	52	22	0.66	0.82	0.6874	0.2322	PLK4->chr4:128802016-128820350:+,polo_like_kinase_4,KIAA1109->KIAA1109,chr4:123073488-123283913:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.66	0.82	0.9196	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	YAP1--MAML2	68	41	YAP1	8159	chr11:102076805:+	MAML2	22480	chr11:95826681:-	ONLY_REF_SPLICE	YES	119	3	0.48	0.97	0.6317	0.3809	{Klijn_CCL:Ovary=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	AM38_CENTRAL_NERVOUS_SYSTEM	0.48	0.97	1.0126	TRUE	0	1	0	2	1	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	NCL--PTMA	74	1	NCL	6884	chr2:232325380:-	PTMA	21436	chr2:232576073:+	INCL_NON_REF_SPLICE	YES	1875	3718	0.04	0.02	0.6874	0.0093	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	AM38_CENTRAL_NERVOUS_SYSTEM	0.02	0.04	0.6967	TRUE	1	0	0	7	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	66	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	339	0	0.17	1	0.6131	0.0279	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.17	1	0.641	TRUE	519	3926	326	965	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	CMTM4--WDR59	54	14	CMTM4	2545	chr16:66670308:-	WDR59	38037	chr16:74943815:-	ONLY_REF_SPLICE	YES	20	21	0.77	0.76	0.5017	0.1301	CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.76	0.77	0.6318	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	YWHAE--SMG6	3	119	YWHAE	1332	chr17:1303341:-	SMG6	39911	chr17:1990473:-	INCL_NON_REF_SPLICE	YES	1742	35	0.07	0.78	0.0279	1.1055	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.07	0.78	1.1334	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	NCL--PTMA	28	1	NCL	6884	chr2:232325380:-	PTMA	21458	chr2:232576095:+	INCL_NON_REF_SPLICE	YES	1875	3371	0.02	0.01	0.2601	0.0093	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	AM38_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.2694	TRUE	1	0	0	7	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	NCL--PTMA	28	1	NCL	6884	chr2:232325380:-	PTMA	22525	chr2:232577162:+	ONLY_REF_SPLICE	YES	1875	2769	0.02	0.01	0.2601	0.0093	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	AM38_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.2694	TRUE	1	0	0	7	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	3	98	AC104389.28	3440	chr11:5367003:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	187	2	0.35	0.98	0.0279	0.9104	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	AM38_CENTRAL_NERVOUS_SYSTEM	0.35	0.98	0.9383	TRUE	0	48	0	65	48	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	YAP1--MAML2	15	42	YAP1	8171	chr11:102076817:+	MAML2	22480	chr11:95826681:-	ONLY_REF_SPLICE	YES	149	3	0.28	0.95	0.1393	0.3902	{Klijn_CCL:Ovary=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	AM38_CENTRAL_NERVOUS_SYSTEM	0.28	0.95	0.5295	TRUE	0	1	0	2	1	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	YAP1--MAML2	11	42	YAP1	9219	chr11:102080295:+	MAML2	22480	chr11:95826681:-	ONLY_REF_SPLICE	YES	149	3	0.26	0.95	0.1022	0.3902	{Klijn_CCL:Ovary=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	AM38_CENTRAL_NERVOUS_SYSTEM	0.26	0.95	0.4924	TRUE	0	1	0	2	1	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RP11-115J23.1--RP11-22P4.1	16	17	RP11-115J23.1	2304	chr11:28763455:+	RP11-22P4.1	14731	chr11:28548025:+	ONLY_REF_SPLICE	YES	23	0	0.59	1	0.1486	0.1579	RP11-115J23.1->chr11:28724162-29085368:+,RP11-22P4.1->chr11:28373654-28548588:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.59	1	0.3065	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RP11-115J23.1--RP11-22P4.1	15	17	RP11-115J23.1	2304	chr11:28763455:+	RP11-22P4.1	14728	chr11:28548022:+	INCL_NON_REF_SPLICE	YES	23	0	0.58	1	0.1393	0.1579	RP11-115J23.1->chr11:28724162-29085368:+,RP11-22P4.1->chr11:28373654-28548588:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.58	1	0.2972	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	15	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1393	0.0372	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.1765	FALSE	499	1288	110	792	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	15	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1393	0.0093	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.1486	FALSE	462	80	0	856	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	EPN2--AC004448.5	13	3	EPN2	25627	chr17:19232960:+	AC004448.5	42418	chr17:19342787:-	ONLY_REF_SPLICE	YES	25	0	0.39	1	0.1208	0.0279	EPN2->chr17:19118928-19240028:+,epsin_2,AC004448.5->chr17:19342456-19364308:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.39	1	0.1487	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	11	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1022	0.0093	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.1115	TRUE	477	1352	189	275	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	7	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.065	0.1022	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AM38_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.1672	FALSE	499	1288	110	792	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	9	1	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	26	2	0.28	0.83	0.0836	0.0093	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	AM38_CENTRAL_NERVOUS_SYSTEM	0.28	0.83	0.0929	TRUE	0	16	0	53	13	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0836	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0836	TRUE	0	0	0	434	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	8	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	1	0.79	0.92	0.0743	0.0279	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.79	0.92	0.1022	FALSE	515	4851	409	746	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	SCAI--RPL35	2	25	SCAI	1874	chr9:127904912:-	RPL35	35741	chr9:127622543:-	ONLY_REF_SPLICE	YES	6	2775	0.82	0.01	0.0186	0.2322	NEIGHBORS[80627],SCAI->chr9:127704887-127905785:-,suppressor_of_cancer_cell_invasion,RPL35->chr9:127620159-127624260:-,ribosomal_protein_L35	AM38_CENTRAL_NERVOUS_SYSTEM	0.01	0.82	0.2508	FALSE	0	0	0	1	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	3	20	AP003900.6	1122	chr21:11169841:+	AC011718.2	10130	chr22:20656894:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0279	0.1858	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.2137	TRUE	0	0	0	11	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.065	FALSE	13	9	0	364	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	CMTM4--WDR59	4	9	CMTM4	2545	chr16:66670308:-	WDR59	38297	chr16:74943555:-	ONLY_REF_SPLICE	YES	20	45	0.39	0.22	0.0372	0.0836	CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.22	0.39	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	NCL--PTMA	6	1	NCL	6884	chr2:232325380:-	PTMA	21982	chr2:232576619:+	INCL_NON_REF_SPLICE	NO	1875	3458	0	0	0.0557	0.0093	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	AM38_CENTRAL_NERVOUS_SYSTEM	0	0	0.065	FALSE	1	0	0	7	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0557	FALSE	13	9	0	364	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	3	11	AP003900.6	1122	chr21:11169841:+	AC011718.2	11864	chr22:20653813:-	ONLY_REF_SPLICE	YES	3	0	0.82	1	0.0279	0.1022	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.82	1	0.1301	TRUE	0	3	0	38	3	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	AC027612.3--AP000345.1	5	1	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	4	0	0.6	1	0.0464	0.0093	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.6	1	0.0557	TRUE	0	0	0	11	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	JSRP1--RPS28	5	1	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0.0093	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0557	TRUE	0	1	0	84	1	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	5	0	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0464	TRUE	0	0	0	434	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	4	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	25	0	0.19	1	0.0372	0.0186	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.19	1	0.0558	FALSE	56	216	12	147	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	CTD-2544M6.1--LINC00923	4	0	CTD-2544M6.1	4364	chr15:98589896:-	LINC00923	10269	chr15:98301891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	CTD-2544M6.1->chr15:98589896-98836406:-,LINC00923->chr15:98285448-98417780:-,long_intergenic_non-protein_coding_RNA_923	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0372	TRUE	0	3	0	6	3	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0.0372	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0651	FALSE	499	1288	110	792	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0279	0.0372	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.7	1	0.0651	FALSE	407	2205	196	549	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RPL12--WDR36	4	0	RPL12	3125	chr9:130211560:-	WDR36	10998	chr5:110432777:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	RPL12->chr9:130209953-130213684:-,ribosomal_protein_L12,WDR36->WD_repeat_domain_36,chr5:110427414-110466200:+	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	EPN2--AC004448.5	3	3	EPN2	25627	chr17:19232960:+	AC004448.5	38151	chr17:19356188:-	INCL_NON_REF_SPLICE	YES	25	0	0.19	1	0.0279	0.0279	EPN2->chr17:19118928-19240028:+,epsin_2,AC004448.5->chr17:19342456-19364308:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.19	1	0.0558	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	3	1	AC104389.28	1084	chr11:5526799:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	1	2	0.8	0.67	0.0279	0.0093	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	AM38_CENTRAL_NERVOUS_SYSTEM	0.67	0.8	0.0372	TRUE	0	16	0	53	13	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	JSRP1--RPS28	3	1	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0.0093	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0372	TRUE	0	1	0	84	1	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	JSRP1--RPS28	3	1	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0.0093	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0372	TRUE	0	1	0	84	1	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	MAML2--YAP1	3	1	MAML2	2798	chr11:96074547:-	YAP1	27066	chr11:102100433:+	ONLY_REF_SPLICE	YES	3	157	0.57	0.02	0.0279	0.0093	MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.02	0.57	0.0372	TRUE	0	0	0	1	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	NCL--PTMA	3	1	NCL	6878	chr2:232325386:-	PTMA	21973	chr2:232576610:+	INCL_NON_REF_SPLICE	NO	1756	3457	0	0	0.0279	0.0093	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	AM38_CENTRAL_NERVOUS_SYSTEM	0	0	0.0372	FALSE	1	0	0	7	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	AP001432.14--TTC3	3	0	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0279	TRUE	0	0	0	15	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	FOSL1--DRAP1	3	0	FOSL1	1333	chr11:65667712:-	DRAP1	9128	chr11:65687251:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_INVERSION:-:+:[18684],FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0279	TRUE	0	0	0	6	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0279	FALSE	499	1288	110	792	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0279	FALSE	499	1288	110	792	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	3	0	NPM1P24	1378	chr10:74677915:-	SET	12395	chr9:131456290:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0279	TRUE	0	0	0	434	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	VIM--RPS28	3	0	VIM	2129	chr10:17271386:+	RPS28	12568	chr19:8386405:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	VIM->chr10:17270258-17279592:+,vimentin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0279	TRUE	0	0	0	4	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	VIM--RPS28	3	0	VIM	2142	chr10:17271399:+	RPS28	12589	chr19:8386426:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	VIM->chr10:17270258-17279592:+,vimentin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0279	TRUE	0	0	0	4	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	VIM--RPS28	3	0	VIM	2119	chr10:17271376:+	RPS28	12550	chr19:8386387:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	VIM->chr10:17270258-17279592:+,vimentin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0279	TRUE	0	0	0	4	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	YWHAE--CRK	3	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0279	TRUE	6	50	7	115	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	2	2	AC104389.28	3440	chr11:5367003:-	HBE1	14230	chr11:5290906:-	ONLY_REF_SPLICE	YES	187	120	0.02	0.03	0.0186	0.0186	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	AM38_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.0372	TRUE	0	48	0	65	48	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	AC027612.3--AP000345.1	2	1	AC027612.3	3881	chr2:91893844:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0.0093	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0279	TRUE	0	0	0	11	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RP11-314O13.1--CDYL2	2	1	RP11-314O13.1	3268	chr16:80874016:-	CDYL2	13750	chr16:80719026:-	ONLY_REF_SPLICE	YES	157	0	0.02	1	0.0186	0.0093	NEIGHBORS[24406],RP11-314O13.1->chr16:80862632-80926492:-,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	AM38_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0279	FALSE	0	0	0	4	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RP11-818F20.5--SKI	2	1	RP11-818F20.5	1439	chr12:104674062:-	SKI	10010	chr1:2234417:+	ONLY_REF_SPLICE	YES	57	33	0.05	0.08	0.0186	0.0093	RP11-818F20.5->chr12:104656092-104674500:-,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.05	0.08	0.0279	TRUE	0	0	0	1	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RP11-818F20.5--TXNRD1	2	1	RP11-818F20.5	1439	chr12:104674062:-	TXNRD1	32099	chr12:104732917:+	ONLY_REF_SPLICE	YES	57	1471	0.05	0	0.0186	0.0093	NEIGHBORS_OVERLAP:-:+:[18408],RP11-818F20.5->chr12:104656092-104674500:-,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	AM38_CENTRAL_NERVOUS_SYSTEM	0	0.05	0.0279	FALSE	0	0	0	1	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	SCARB1--UBC	2	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	204	68	0.01	0.04	0.0186	0.0093	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	AM38_CENTRAL_NERVOUS_SYSTEM	0.01	0.04	0.0279	FALSE	55	66	6	101	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	EXT2--PLK1S1	2	0	EXT2	17809	chr11:44228509:+	PLK1S1	34659	chr20:21195173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2,PLK1S1->Oncogene{Bushman},chr20:21106624-21227260:+	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	MYO1C--GALK1	2	0	MYO1C	2213	chr17:1394894:-	GALK1	28235	chr17:73760167:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	MYO1C->chr17:1367392-1396106:-,myosin_IC,GALK1->chr17:73747675-73761792:-,galactokinase_1	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RP11-314O13.1--CDYL2	2	0	RP11-314O13.1	1091	chr16:80926402:-	CDYL2	13750	chr16:80719026:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	NEIGHBORS[24406],RP11-314O13.1->chr16:80862632-80926492:-,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	AM38_CENTRAL_NERVOUS_SYSTEM	1	1	0.0186	FALSE	0	0	0	3	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	1	1	0.8	0.0093	0.0279	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.0372	FALSE	467	2173	244	435	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	SNTA1--YTHDF1	1	3	SNTA1	5460	chr20:32000102:-	YTHDF1	15486	chr20:61835159:-	ONLY_REF_SPLICE	YES	34	90	0.11	0.04	0.0093	0.0279	SNTA1->chr20:31995761-32031698:-,syntrophin_alpha_1,YTHDF1->YTH_N6-methyladenosine_RNA_binding_protein_1,chr20:61826781-61847586:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.04	0.11	0.0372	TRUE	0	0	0	1	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	YAP1--MAML2	1	3	YAP1	5308	chr11:102033302:+	MAML2	22480	chr11:95826681:-	ONLY_REF_SPLICE	YES	117	3	0.03	0.57	0.0093	0.0279	{Klijn_CCL:Ovary=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	AM38_CENTRAL_NERVOUS_SYSTEM	0.03	0.57	0.0372	TRUE	0	0	0	1	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	PRCP--BCO2	1	2	PRCP	11912	chr11:82560091:-	BCO2	36373	chr11:112088484:+	ONLY_REF_SPLICE	YES	136	1	0.02	0.75	0.0093	0.0186	PRCP->chr11:82534544-82681626:-,prolylcarboxypeptidase,BCO2->beta-carotene_oxygenase_2,chr11:112046190-112095422:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.02	0.75	0.0279	TRUE	0	0	0	1	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	1	29	0.75	0.09	0.0093	0.0186	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	AM38_CENTRAL_NERVOUS_SYSTEM	0.09	0.75	0.0279	FALSE	16	356	14	466	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	1	1	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	26	0	0.07	1	0.0093	0.0093	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	AM38_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.0186	TRUE	0	11	0	26	8	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	ENOPH1--HNRNPD	1	1	ENOPH1	1352	chr4:83352066:+	HNRNPD	14468	chr4:83280792:-	ONLY_REF_SPLICE	NO	155	379	0.01	0.01	0.0093	0.0093	LOCAL_INVERSION:+:-:[56059],ENOPH1->chr4:83351715-83382244:+,enolase-phosphatase_1,HNRNPD->Oncogene{Bushman},chr4:83273651-83295656:-,heterogeneous_nuclear_ribonucleoprotein_D	AM38_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	HDLBP--THAP4	1	1	HDLBP	2464	chr2:242254985:-	THAP4	44071	chr2:242545888:-	ONLY_REF_SPLICE	NO	128	97	0.02	0.02	0.0093	0.0093	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein,THAP4->THAP_domain_containing_4,chr2:242523820-242576864:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.02	0.02	0.0186	TRUE	0	2	0	4	1	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RP11-761E20.1--PLS3	1	1	RP11-761E20.1	1129	chrX:115085294:-	PLS3	10293	chrX:114844555:+	ONLY_REF_SPLICE	YES	0	29	1	0.06	0.0093	0.0093	RP11-761E20.1->chrX:115033604-115085422:-,PLS3->chrX:114795501-114885181:+,plastin_3	AM38_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0186	TRUE	0	0	0	2	0	TRUE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RP11-818F20.5--TXNRD1	1	1	RP11-818F20.5	1439	chr12:104674062:-	TXNRD1	20321	chr12:104705068:+	ONLY_REF_SPLICE	NO	57	1623	0.03	0	0.0093	0.0093	NEIGHBORS_OVERLAP:-:+:[18408],RP11-818F20.5->chr12:104656092-104674500:-,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	AM38_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0186	FALSE	0	0	0	3	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	RPL37A--XRCC5	1	1	RPL37A	2843	chr2:217364754:+	XRCC5	20917	chr2:216983766:+	ONLY_REF_SPLICE	YES	1249	799	0	0	0.0093	0.0093	GTEx&tcga_normals:1/3694=0.03%,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a,XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+	AM38_CENTRAL_NERVOUS_SYSTEM	0	0	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	SNTA1--YTHDF1	1	1	SNTA1	5181	chr20:32000381:-	YTHDF1	15486	chr20:61835159:-	ONLY_REF_SPLICE	YES	35	90	0.05	0.02	0.0093	0.0093	SNTA1->chr20:31995761-32031698:-,syntrophin_alpha_1,YTHDF1->YTH_N6-methyladenosine_RNA_binding_protein_1,chr20:61826781-61847586:-	AM38_CENTRAL_NERVOUS_SYSTEM	0.02	0.05	0.0186	TRUE	0	0	0	1	0	FALSE	ACH-000269
AM38_CENTRAL_NERVOUS_SYSTEM	WWOX--RP11-319G9.5	1	1	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	11	0	0.15	1	0.0093	0.0093	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	AM38_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.0186	FALSE	33	33	2	19	0	FALSE	ACH-000269
CAL33_UPPER_AERODIGESTIVE_TRACT	C9orf3--WNK2	284	124	C9orf3	24370	chr9:97767898:+	WNK2	70284	chr9:96070610:+	ONLY_REF_SPLICE	YES	190	44	0.68	0.9	2.2056	0.963	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+	CAL33_UPPER_AERODIGESTIVE_TRACT	0.68	0.9	3.1686	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	CLTC--VMP1	200	66	CLTC	1316	chr17:57697534:+	VMP1	53132	chr17:57915656:+	ONLY_REF_SPLICE	YES	132	185	0.67	0.59	1.5532	0.5126	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	CAL33_UPPER_AERODIGESTIVE_TRACT	0.59	0.67	2.0658	FALSE	0	6	0	10	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	32	267	MT-ND4	1741	chrM:11500:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	3978	0	0.07	1	0.2485	2.0736	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.07	1	2.3221	FALSE	344	827	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	81	41	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	593	0	0.17	1	0.6291	0.3184	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.17	1	0.9475	FALSE	344	827	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	82	9	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6368	0.0699	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.7067	TRUE	508	994	45	981	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	77	4	KRT13	1342	chr17:39661616:-	KRT5	9412	chr12:52913785:-	INCL_NON_REF_SPLICE	YES	1055	2943	0.07	0.03	0.598	0.0311	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0.03	0.07	0.6291	TRUE	9	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	261	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	46	2	0.85	0.99	0.0699	2.027	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.85	0.99	2.0969	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	28	177	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	5559	0	0.04	1	0.2175	1.3746	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.04	1	1.5921	FALSE	344	827	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	265	MT-ND4	1386	chrM:11145:+	MT-ND4L	5452	chrM:10543:+	INCL_NON_REF_SPLICE	YES	131	0	0.67	1	0.0388	2.058	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.67	1	2.0968	FALSE	344	827	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	261	MT-ND4	1222	chrM:10981:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	42	0	0.86	1	0.0388	2.027	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.86	1	2.0658	FALSE	344	827	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	256	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	33	1	0.89	1	0.0388	1.9882	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.89	1	2.027	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	259	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	41	5	0.87	0.98	0.0311	2.0115	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.87	0.98	2.0426	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	263	MT-ND4	1501	chrM:11260:+	MT-ND4L	5523	chrM:10614:+	INCL_NON_REF_SPLICE	YES	398	5	0.4	0.98	0.0233	2.0425	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.4	0.98	2.0658	FALSE	344	827	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	261	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	40	0	0.87	1	0.0233	2.027	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.87	1	2.0503	FALSE	344	827	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	215	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	15	1	0.94	1	0.0388	1.6697	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.94	1	1.7085	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	C9orf3--WNK2	49	34	C9orf3	24370	chr9:97767898:+	WNK2	74184	chr9:96079802:+	ONLY_REF_SPLICE	YES	190	67	0.3	0.55	0.3805	0.2641	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+	CAL33_UPPER_AERODIGESTIVE_TRACT	0.3	0.55	0.6446	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	CDH3--HAS3	54	11	CDH3	11140	chr16:68719253:+	HAS3	22539	chr16:69139588:+	INCL_NON_REF_SPLICE	YES	443	7	0.13	0.9	0.4194	0.0854	CDH3->cadherin_3,chr16:68670092-68756519:+,HAS3->chr16:69139467-69152622:+,hyaluronan_synthase_3	CAL33_UPPER_AERODIGESTIVE_TRACT	0.13	0.9	0.5048	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	185	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	14	4	0.93	0.98	0.0699	1.4368	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.93	0.98	1.5067	FALSE	344	821	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	11	174	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	45	0	0.8	1	0.0854	1.3513	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.8	1	1.4367	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	187	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	19	0	0.91	1	0.0233	1.4523	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.91	1	1.4756	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	46	6	KRT13	1432	chr17:39661526:-	KRT5	9394	chr12:52913803:-	INCL_NON_REF_SPLICE	NO	1631	2902	0.03	0.02	0.3572	0.0466	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0.02	0.03	0.4038	TRUE	9	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	175	MT-ND4	1466	chrM:11225:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	271	0	0.4	1	0.0233	1.3591	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.4	1	1.3824	FALSE	344	827	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	C9orf3--WNK2	12	131	C9orf3	24370	chr9:97767898:+	WNK2	68733	chr9:96069059:+	ONLY_REF_SPLICE	YES	190	29	0.43	0.83	0.0932	1.0174	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+	CAL33_UPPER_AERODIGESTIVE_TRACT	0.43	0.83	1.1106	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	43	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	182	3	0.2	0.94	0.3339	0.0155	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAL33_UPPER_AERODIGESTIVE_TRACT	0.2	0.94	0.3494	TRUE	519	3926	326	965	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	41	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3184	0.0233	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.3417	FALSE	499	1288	110	792	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	39	7	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3611	26	0.01	0.64	0.3029	0.0544	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.64	0.3573	FALSE	43	37	8	105	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	146	MT-ND4	1170	chrM:10929:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	40	0	0.79	1	0.0233	1.1339	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.79	1	1.1572	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	140	MT-ND4	1503	chrM:11262:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	407	0	0.26	1	0.0233	1.0873	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.26	1	1.1106	FALSE	344	827	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	OR51S1--TP53I11	37	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2874	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.2874	TRUE	402	216	10	229	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	127	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	NO	37	0	0.78	1	0.0388	0.9863	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.78	1	1.0251	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	34	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2641	0.0621	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.3262	FALSE	416	2512	207	587	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT5--MT-CO3	35	1	KRT5	4002	chr12:52911470:-	MT-CO3	10585	chrM:9678:+	INCL_NON_REF_SPLICE	NO	4288	11760	0.01	0	0.2718	0.0078	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.2796	FALSE	0	0	0	4	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	127	MT-ND4	1314	chrM:11073:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	66	0	0.66	1	0.0233	0.9863	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.66	1	1.0096	FALSE	344	827	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	29	15	KRT5	1742	chr12:52913730:-	KRT15	14098	chr17:39674797:-	INCL_NON_REF_SPLICE	YES	3357	743	0.01	0.06	0.2252	0.1165	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.06	0.3417	TRUE	0	1	1	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	32	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2485	0.0233	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.2718	FALSE	462	80	0	856	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	21	41	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	7809	0	0.01	1	0.1631	0.3184	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.4815	FALSE	344	827	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	31	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2408	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.2408	FALSE	292	1546	117	613	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--C9orf3	29	6	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	1363	378	0.03	0.08	0.2252	0.0466	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CAL33_UPPER_AERODIGESTIVE_TRACT	0.03	0.08	0.2718	TRUE	86	303	14	25	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	27	11	KRT5	1723	chr12:52913749:-	KRT15	14082	chr17:39674813:-	INCL_NON_REF_SPLICE	YES	3105	660	0.01	0.05	0.2097	0.0854	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.05	0.2951	TRUE	0	1	1	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	25	13	KRT5	1728	chr12:52913744:-	KRT15	13898	chr17:39674997:-	INCL_NON_REF_SPLICE	NO	3075	565	0.01	0.06	0.1942	0.101	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.06	0.2952	FALSE	0	1	1	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	27	4	KRT13	1390	chr17:39661568:-	KRT5	9490	chr12:52913707:-	INCL_NON_REF_SPLICE	YES	1015	3461	0.03	0.01	0.2097	0.0311	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.03	0.2408	TRUE	9	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	21	21	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.1631	0.1631	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL33_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.3262	FALSE	499	1288	110	792	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	24	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.1864	0.0388	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL33_UPPER_AERODIGESTIVE_TRACT	0.94	1	0.2252	FALSE	515	4851	409	746	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	24	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1864	0.0233	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.2097	FALSE	499	1288	110	792	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	60	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	521	0	0.12	1	0.0699	0.466	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.12	1	0.5359	FALSE	344	827	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	59	MT-ND4	1471	chrM:11230:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	273	0	0.19	1	0.0544	0.4582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.19	1	0.5126	FALSE	344	827	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	ABCA2--RP11-613M10.9	20	5	ABCA2	1841	chr9:139922527:-	RP11-613M10.9	24604	chr9:38016128:-	ONLY_REF_SPLICE	YES	41	37	0.38	0.4	0.1553	0.0388	ABCA2->ATP_binding_cassette_subfamily_A_member_2,chr9:139901686-139923367:-,RP11-613M10.9->chr9:37588410-38068684:-	CAL33_UPPER_AERODIGESTIVE_TRACT	0.38	0.4	0.1941	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	CDH3--HAS3	18	12	CDH3	11140	chr16:68719253:+	HAS3	22519	chr16:69139568:+	INCL_NON_REF_SPLICE	YES	443	0	0.06	1	0.1398	0.0932	CDH3->cadherin_3,chr16:68670092-68756519:+,HAS3->chr16:69139467-69152622:+,hyaluronan_synthase_3	CAL33_UPPER_AERODIGESTIVE_TRACT	0.06	1	0.233	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	59	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	41	0	0.61	1	0.0466	0.4582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.61	1	0.5048	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	20	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	13	1	0.63	0.1553	0.0155	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAL33_UPPER_AERODIGESTIVE_TRACT	0.63	1	0.1708	TRUE	465	1949	224	605	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	19	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1476	0.0311	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.1787	FALSE	462	80	0	856	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	CLTC--VMP1	1	75	CLTC	1316	chr17:57697534:+	VMP1	51426	chr17:57911373:+	ONLY_REF_SPLICE	YES	132	44	0.37	0.63	0.0078	0.5825	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	CAL33_UPPER_AERODIGESTIVE_TRACT	0.37	0.63	0.5903	FALSE	0	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	59	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	46	0	0.58	1	0.0388	0.4582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.58	1	0.497	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	59	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	5	4	0.93	0.94	0.0311	0.4582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.93	0.94	0.4893	FALSE	344	821	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	40	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	37	0	0.56	1	0.0621	0.3106	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.56	1	0.3727	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	17	4	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5285	68	0	0.24	0.132	0.0311	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0.24	0.1631	FALSE	43	37	8	105	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	58	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	37	0	0.62	1	0.0233	0.4504	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.62	1	0.4737	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	16	4	KRT13	1366	chr17:39661592:-	KRT5	9490	chr12:52913707:-	INCL_NON_REF_SPLICE	NO	885	3461	0.02	0.01	0.1243	0.0311	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.1554	FALSE	9	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	41	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	45	0	0.51	1	0.0466	0.3184	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.51	1	0.365	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	41	MT-ND4	2122	chrM:11881:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	10869	0	0	1	0.0466	0.3184	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0	1	0.365	FALSE	315	784	43	302	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	15	4	KRT13	1342	chr17:39661616:-	KRT5	9490	chr12:52913707:-	INCL_NON_REF_SPLICE	YES	1055	3461	0.02	0.01	0.1165	0.0311	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.1476	TRUE	9	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	13	10	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5	0	0.82	1	0.101	0.0777	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL33_UPPER_AERODIGESTIVE_TRACT	0.82	1	0.1787	FALSE	43	37	8	105	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	14	5	KRT13	1390	chr17:39661568:-	KRT5	9412	chr12:52913785:-	INCL_NON_REF_SPLICE	YES	1015	2943	0.02	0.01	0.1087	0.0388	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.1475	TRUE	9	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	14	4	KRT13	1378	chr17:39661580:-	KRT5	9412	chr12:52913785:-	INCL_NON_REF_SPLICE	YES	929	2943	0.02	0.01	0.1087	0.0311	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.1398	TRUE	9	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	48	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	16	0	0.76	1	0.0233	0.3728	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.76	1	0.3961	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MID1--RP11-347C12.2	13	6	MID1	10136	chrX:10463624:-	RP11-347C12.2	25970	chr16:30317274:-	ONLY_REF_SPLICE	YES	0	15	1	0.56	0.101	0.0466	MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1,RP11-347C12.2->chr16:30234230-30346695:-	CAL33_UPPER_AERODIGESTIVE_TRACT	0.56	1	0.1476	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	41	MT-ND4	1452	chrM:11211:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	231	0	0.16	1	0.0311	0.3184	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.16	1	0.3495	FALSE	344	827	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	41	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	609	0	0.07	1	0.0311	0.3184	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.3495	FALSE	344	827	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	37	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	13	0	0.76	1	0.0388	0.2874	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.76	1	0.3262	FALSE	344	821	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	44	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	47	0	0.5	1	0.0233	0.3417	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.5	1	0.365	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	8	22	KRT5	1772	chr12:52913700:-	KRT15	14107	chr17:39674788:-	INCL_NON_REF_SPLICE	YES	3623	796	0.01	0.04	0.0621	0.1709	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.04	0.233	TRUE	0	1	1	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	34	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	46	0	0.46	1	0.0388	0.2641	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.46	1	0.3029	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	9	16	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0.1243	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.1942	FALSE	499	1288	110	792	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	6	23	KRT5	1764	chr12:52913708:-	KRT15	14063	chr17:39674832:-	INCL_NON_REF_SPLICE	YES	3620	588	0.01	0.05	0.0466	0.1786	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.05	0.2252	TRUE	0	1	1	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	6	21	KRT5	1757	chr12:52913715:-	KRT15	14080	chr17:39674815:-	INCL_NON_REF_SPLICE	YES	3614	657	0.01	0.04	0.0466	0.1631	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.04	0.2097	TRUE	0	1	1	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	24	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	16	0	0.64	1	0.0388	0.1864	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.64	1	0.2252	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT5--MT-CO3	10	2	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	3339	11508	0	0	0.0777	0.0155	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0	0.0932	FALSE	0	0	0	18	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	5	20	KRT5	1753	chr12:52913719:-	KRT15	14088	chr17:39674807:-	INCL_NON_REF_SPLICE	YES	3568	691	0.01	0.03	0.0388	0.1553	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.03	0.1941	TRUE	0	1	1	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	10	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0777	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0777	FALSE	183	104	9	328	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0777	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0777	TRUE	0	0	0	434	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	15	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	51	0	0.29	1	0.0466	0.1165	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.29	1	0.1631	FALSE	344	827	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	22	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0311	0.1709	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL33_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.202	FALSE	499	1288	110	792	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	4	20	KRT5	1763	chr12:52913709:-	KRT15	14098	chr17:39674797:-	INCL_NON_REF_SPLICE	YES	3681	743	0.01	0.03	0.0311	0.1553	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.03	0.1864	TRUE	0	1	1	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.92	0.0621	0.0233	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.92	1	0.0854	FALSE	344	821	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	NCOA6--DLG1	8	2	NCOA6	17363	chr20:33334611:-	DLG1	40127	chr3:196921460:-	ONLY_REF_SPLICE	YES	54	85	0.16	0.11	0.0621	0.0155	NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6,DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component	CAL33_UPPER_AERODIGESTIVE_TRACT	0.11	0.16	0.0776	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	CORO2A--C9orf3	8	0	CORO2A	3541	chr9:100919742:-	C9orf3	31587	chr9:97686268:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0621	0	CORO2A->Oncogene{Bushman},chr9:100883257-100954922:-,coronin_2A,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0621	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	7	4	KRT13	1390	chr17:39661568:-	KRT5	9478	chr12:52913719:-	INCL_NON_REF_SPLICE	YES	1015	3568	0.01	0	0.0544	0.0311	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0855	FALSE	9	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--GLS	8	0	MIR205HG	4485	chr1:209605649:+	GLS	8066	chr2:191745599:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GLS->chr2:191745553-191830278:+,glutaminase	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0621	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--GLS	8	0	MIR205HG	4488	chr1:209605652:+	GLS	8066	chr2:191745599:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GLS->chr2:191745553-191830278:+,glutaminase	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0621	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--GLS	8	0	MIR205HG	4482	chr1:209605646:+	GLS	8066	chr2:191745599:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GLS->chr2:191745553-191830278:+,glutaminase	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0621	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	8	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0621	FALSE	183	104	9	328	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	5	12	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.0932	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.132	FALSE	43	37	8	105	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	TIRAP--KIRREL3	8	0	TIRAP	1089	chr11:126153048:+	KIRREL3	15994	chr11:126432807:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0621	0	TIRAP->chr11:126152960-126168740:+,toll-interleukin_1_receptor_(TIR)_domain_containing_adaptor_protein,KIRREL3->chr11:126293254-126873355:-,kin_of_IRRE_like_3_(Drosophila)	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0621	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	15	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	46	0	0.29	1	0.0311	0.1165	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.29	1	0.1476	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	7	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.45	1	0.0544	0.0233	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL33_UPPER_AERODIGESTIVE_TRACT	0.45	1	0.0777	FALSE	125	705	46	456	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--EML2	7	2	MIR205HG	4006	chr1:209605170:+	EML2	14776	chr19:46142131:-	ONLY_REF_SPLICE	YES	1363	15	0.01	0.38	0.0544	0.0155	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,EML2->chr19:46110252-46148887:-,echinoderm_microtubule_associated_protein_like_2	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.38	0.0699	FALSE	0	0	0	3	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	6	5	KRT13	1390	chr17:39661568:-	KRT5	9394	chr12:52913803:-	INCL_NON_REF_SPLICE	YES	1015	2902	0.01	0	0.0466	0.0388	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0854	FALSE	9	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	6	4	KRT13	1399	chr17:39661559:-	KRT5	9478	chr12:52913719:-	INCL_NON_REF_SPLICE	YES	1170	3568	0.01	0	0.0466	0.0311	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0777	FALSE	9	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	6	4	KRT5	5027	chr12:52910445:-	KRT15	17148	chr17:39671747:-	INCL_NON_REF_SPLICE	YES	5143	5953	0	0	0.0466	0.0311	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0	0.0777	FALSE	0	1	1	1	1	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--GLS	7	0	MIR205HG	4479	chr1:209605643:+	GLS	8066	chr2:191745599:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GLS->chr2:191745553-191830278:+,glutaminase	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	3	15	KRT5	1750	chr12:52913722:-	KRT15	14106	chr17:39674789:-	INCL_NON_REF_SPLICE	YES	3550	790	0.01	0.02	0.0233	0.1165	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.1398	TRUE	0	1	1	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	4	11	MT-ATP6	1477	chrM:9003:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	7512	14940	0	0	0.0311	0.0854	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0	0.1165	FALSE	183	104	9	328	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	15	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	50	0	0.26	1	0.0233	0.1165	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	0.26	1	0.1398	FALSE	344	826	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	5	6	KRT13	1405	chr17:39661553:-	KRT5	9335	chr12:52913862:-	INCL_NON_REF_SPLICE	NO	1267	3217	0.01	0	0.0388	0.0466	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0854	FALSE	9	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	5	6	MT-ND5	2514	chrM:13850:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2982	68	0	0.14	0.0388	0.0466	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0.14	0.0854	FALSE	43	37	8	105	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	5	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0.0388	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0776	FALSE	467	2173	244	435	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--GLS	6	0	MIR205HG	4470	chr1:209605634:+	GLS	8063	chr2:191745596:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GLS->chr2:191745553-191830278:+,glutaminase	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	6	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0466	FALSE	183	104	9	328	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	12	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0233	0.0932	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.1165	FALSE	43	37	8	105	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	NUDT1--HACE1	6	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0466	TRUE	1	20	0	20	17	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.0311	0.0544	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL33_UPPER_AERODIGESTIVE_TRACT	0.85	1	0.0855	FALSE	275	511	55	178	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	3	10	KRT5	1723	chr12:52913749:-	KRT15	14094	chr17:39674801:-	INCL_NON_REF_SPLICE	YES	3105	707	0	0.02	0.0233	0.0777	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0.02	0.101	TRUE	0	1	1	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	4	6	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3254	16870	0	0	0.0311	0.0466	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0	0.0777	FALSE	183	104	9	328	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	10	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10	26	0.57	0.33	0.0233	0.0777	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL33_UPPER_AERODIGESTIVE_TRACT	0.33	0.57	0.101	FALSE	43	37	8	105	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	10	MT-ND5	2687	chrM:14023:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	770	26	0.02	0.33	0.0233	0.0777	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL33_UPPER_AERODIGESTIVE_TRACT	0.02	0.33	0.101	FALSE	43	37	8	105	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	4	5	KRT13	1383	chr17:39661575:-	KRT5	9459	chr12:52913738:-	INCL_NON_REF_SPLICE	NO	980	3160	0.01	0	0.0311	0.0388	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0699	FALSE	9	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	4	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	21	0	0.3	1	0.0311	0.0388	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL33_UPPER_AERODIGESTIVE_TRACT	0.3	1	0.0699	FALSE	164	806	69	479	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	CALM3--MT-ATP8	5	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0388	FALSE	12	0	0	26	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	4	4	KRT13	1359	chr17:39661599:-	KRT5	9459	chr12:52913738:-	INCL_NON_REF_SPLICE	NO	884	3160	0.01	0	0.0311	0.0311	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0622	FALSE	9	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	4	4	KRT13	4311	chr17:39658647:-	KRT5	12639	chr12:52910558:-	INCL_NON_REF_SPLICE	NO	2563	5742	0	0	0.0311	0.0311	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0	0.0622	FALSE	8	1	0	1	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT5--MT-CO3	4	4	KRT5	4512	chr12:52910960:-	MT-CO3	10272	chrM:9365:+	INCL_NON_REF_SPLICE	YES	5047	7805	0	0	0.0311	0.0311	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0	0.0622	FALSE	0	0	0	4	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--GLS	5	0	MIR205HG	4476	chr1:209605640:+	GLS	8066	chr2:191745599:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GLS->chr2:191745553-191830278:+,glutaminase	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0388	FALSE	344	821	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	4	4	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	5039	0	0	1	0.0311	0.0311	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL33_UPPER_AERODIGESTIVE_TRACT	0	1	0.0622	FALSE	43	37	8	105	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	4	3	KRT5	4489	chr12:52910983:-	KRT15	16414	chr17:39672481:-	INCL_NON_REF_SPLICE	YES	4498	5584	0	0	0.0311	0.0233	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0	0.0544	FALSE	1	1	1	1	1	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	7	MT-ND5	2243	chrM:13579:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	3611	0	0	1	0.0233	0.0544	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL33_UPPER_AERODIGESTIVE_TRACT	0	1	0.0777	FALSE	43	37	8	105	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	4	2	KRT13	1411	chr17:39661547:-	KRT5	9514	chr12:52913683:-	INCL_NON_REF_SPLICE	YES	1409	3468	0	0	0.0311	0.0155	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0	0.0466	FALSE	9	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	4	2	MT-ND5	1570	chrM:12906:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3781	26	0	0.19	0.0311	0.0155	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0.19	0.0466	FALSE	42	36	7	104	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	6	MT-ND5	2303	chrM:13639:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2923	68	0	0.12	0.0233	0.0466	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0.12	0.0699	FALSE	43	37	8	105	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	3	5	KRT13	1389	chr17:39661569:-	KRT5	9453	chr12:52913744:-	INCL_NON_REF_SPLICE	YES	1025	3075	0.01	0	0.0233	0.0388	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0621	FALSE	9	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0311	0.0078	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0389	FALSE	462	80	0	856	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	CTD-2337A12.1--CAST	4	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0311	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0311	TRUE	347	1186	183	220	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0311	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0311	FALSE	499	1288	110	792	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0311	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0311	FALSE	499	1288	110	792	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	C9orf3--WNK2	1	11	C9orf3	24370	chr9:97767898:+	WNK2	76873	chr9:96082649:+	ONLY_REF_SPLICE	NO	190	23	0.06	0.34	0.0078	0.0854	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+	CAL33_UPPER_AERODIGESTIVE_TRACT	0.06	0.34	0.0932	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	3	2	KRT13	1397	chr17:39661561:-	KRT5	9506	chr12:52913691:-	INCL_NON_REF_SPLICE	YES	1120	3635	0	0	0.0233	0.0155	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0	0.0388	FALSE	9	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	3	2	KRT13	4299	chr17:39658659:-	KRT5	12744	chr12:52910453:-	INCL_NON_REF_SPLICE	YES	2676	5342	0	0	0.0233	0.0155	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0	0.0388	FALSE	8	1	0	1	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	3	1	KRT13	1390	chr17:39661568:-	KRT5	9532	chr12:52913665:-	INCL_NON_REF_SPLICE	YES	1015	3326	0	0	0.0233	0.0078	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0	0.0311	FALSE	9	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	1	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	9042	15230	0	0	0.0233	0.0078	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0	0.0311	FALSE	183	104	9	328	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	VTI1A--RP11-57H14.3	3	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	34	0	0.11	1	0.0233	0.0078	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	CAL33_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.0311	FALSE	272	151	14	158	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	DNAJC25--UGCG	3	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	50	73	10	50	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	JSRP1--RPS28	3	0	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	1	0	84	1	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	KRT13--KRT5	3	0	KRT13	1354	chr17:39661604:-	KRT5	14242	chr12:52908955:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	6	0	0	1	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--EML2	3	0	MIR205HG	1262	chr1:209602426:+	EML2	20078	chr19:46132010:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0233	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,EML2->chr19:46110252-46148887:-,echinoderm_microtubule_associated_protein_like_2	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--GLS	3	0	MIR205HG	4491	chr1:209605655:+	GLS	8066	chr2:191745599:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0233	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GLS->chr2:191745553-191830278:+,glutaminase	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5332	chrM:6554:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0233	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	FALSE	183	104	9	328	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0233	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	FALSE	344	821	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0233	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	FALSE	344	821	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0233	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	FALSE	344	821	44	306	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0233	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	FALSE	499	1288	110	792	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0233	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	FALSE	499	1288	110	792	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0233	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	FALSE	499	1288	110	792	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0233	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	FALSE	499	1288	110	792	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	2	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0.0233	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0388	FALSE	93	270	15	244	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0078	0.0544	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0622	FALSE	192	492	57	212	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0078	0.0544	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL33_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.0622	FALSE	407	2205	196	549	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--C9orf3	2	2	MIR205HG	1589	chr1:209602753:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	1990	378	0	0.01	0.0155	0.0155	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.031	FALSE	9	19	1	3	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	SIL1--CTNNA1	2	1	SIL1	15184	chr5:138456724:-	CTNNA1	41730	chr5:138145727:+	ONLY_REF_SPLICE	YES	125	422	0.02	0.01	0.0155	0.0078	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=6;pct=0.07%;dist=Cells_-_Transformed_fibroblasts=2,Artery_-_Aorta=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1},{Klijn_CCL:Skin=1},LOCAL_INVERSION:-:+:[11686],SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.0233	FALSE	0	1	0	2	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	CMTM8--CMTM7	2	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0155	FALSE	118	557	29	88	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	CORO2A--C9orf3	2	0	CORO2A	3541	chr9:100919742:-	C9orf3	38526	chr9:97717459:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	CORO2A->Oncogene{Bushman},chr9:100883257-100954922:-,coronin_2A,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	GRAMD2--PKM	2	0	GRAMD2	1055	chr15:72490072:-	PKM	24728	chr15:72511451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	LOCAL_REARRANGEMENT:-:[1244],GRAMD2->GRAM_domain_containing_2,chr15:72452148-72490126:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--GLS	2	0	MIR205HG	4006	chr1:209605170:+	GLS	12081	chr2:191765290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GLS->chr2:191745553-191830278:+,glutaminase	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MTIF3--CD46	2	0	MTIF3	2820	chr13:28019225:-	CD46	19489	chr1:207943666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	MTIF3->chr13:28009776-28024739:-,mitochondrial_translational_initiation_factor_3,CD46->CD46_molecule,Oncogene{Bushman},chr1:207925402-207968858:+	CAL33_UPPER_AERODIGESTIVE_TRACT	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	MIR205HG--C9orf3	1	3	MIR205HG	2681	chr1:209603845:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	NO	1804	378	0	0.01	0.0078	0.0233	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0311	FALSE	7	55	2	6	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	ASPH--RAB2A	1	1	ASPH	21093	chr8:62555447:-	RAB2A	50700	chr8:61471411:+	ONLY_REF_SPLICE	YES	1672	388	0	0.01	0.0078	0.0078	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,RAB2A->RAB2A,_member_RAS_oncogene_family,chr8:61429416-61536186:+	CAL33_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0156	FALSE	0	0	0	1	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	ATP2C1--SERINC2	1	1	ATP2C1	12412	chr3:130660543:+	SERINC2	45723	chr1:31896540:+	ONLY_REF_SPLICE	YES	157	102	0.01	0.02	0.0078	0.0078	ATP2C1->ATPase_secretory_pathway_Ca2+_transporting_1,chr3:130569439-130735556:+,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	CAL33_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.0156	FALSE	0	0	0	1	0	FALSE	ACH-000518
CAL33_UPPER_AERODIGESTIVE_TRACT	ATRX--MAGT1	1	1	ATRX	1235	chrX:77041468:-	MAGT1	57508	chrX:77086392:-	ONLY_REF_SPLICE	YES	46	109	0.04	0.02	0.0078	0.0078	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[40159],ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,MAGT1->chrX:77081861-77151090:-,magnesium_transporter_1	CAL33_UPPER_AERODIGESTIVE_TRACT	0.02	0.04	0.0156	TRUE	0	2	0	1	2	TRUE	ACH-000518
HS739T_FIBROBLAST	COL1A1--FN1	622	156	COL1A1	12966	chr17:48266809:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	21140	9747	0.04	0.07	7.7063	1.9328	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0.04	0.07	9.6391	TRUE	0	0	0	17	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	170	17	COL1A1	5208	chr17:48274567:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	14940	9747	0.01	0.02	2.1062	0.2106	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0.01	0.02	2.3168	TRUE	0	0	0	9	0	FALSE	ACH-000413
HS739T_FIBROBLAST	TIMM23B--LINC00843	80	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9912	0.2973	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS739T_FIBROBLAST	1	1	1.2885	TRUE	508	994	45	981	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	3	235	COL1A1	16937	chr17:48262838:-	FN1	35853	chr2:216279629:-	INCL_NON_REF_SPLICE	YES	4899	14338	0.05	0.02	0.0372	2.9115	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0.02	0.05	2.9487	TRUE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	3	212	COL1A1	16456	chr17:48263319:-	FN1	38883	chr2:216272917:-	INCL_NON_REF_SPLICE	YES	15427	11665	0.01	0.02	0.0372	2.6266	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0.01	0.02	2.6638	TRUE	0	0	0	2	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	4	208	COL1A1	15403	chr17:48264372:-	FN1	35822	chr2:216279660:-	INCL_NON_REF_SPLICE	YES	19600	14100	0.01	0.01	0.0496	2.577	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0.01	0.01	2.6266	TRUE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	9	150	COL1A1	12718	chr17:48267057:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	22870	9747	0.01	0.02	0.1115	1.8584	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0.01	0.02	1.9699	TRUE	0	0	0	17	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	3	170	COL1A1	16872	chr17:48262903:-	FN1	51251	chr2:216251522:-	INCL_NON_REF_SPLICE	YES	7648	13566	0.02	0.01	0.0372	2.1062	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0.01	0.02	2.1434	TRUE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	8	140	COL1A1	15650	chr17:48264125:-	FN1	58080	chr2:216243979:-	INCL_NON_REF_SPLICE	YES	15787	15479	0.01	0.01	0.0991	1.7345	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0.01	0.01	1.8336	TRUE	0	0	0	18	0	FALSE	ACH-000413
HS739T_FIBROBLAST	TIMM23--RP11-464F9.1	36	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	173	3	0.19	0.93	0.446	0.0619	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS739T_FIBROBLAST	0.19	0.93	0.5079	TRUE	519	3926	326	965	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	14	91	COL1A1	13456	chr17:48266319:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	19235	17113	0.01	0.01	0.1735	1.1274	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0.01	0.01	1.3009	TRUE	0	0	0	16	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	6	107	COL1A1	13883	chr17:48265892:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	20208	17113	0.01	0.01	0.0743	1.3257	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0.01	0.01	1.4	TRUE	0	0	0	16	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	3	112	COL1A1	14920	chr17:48264855:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	17364	17113	0.01	0.01	0.0372	1.3876	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0.01	0.01	1.4248	TRUE	0	0	0	10	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	3	97	COL1A1	13471	chr17:48266304:-	FN1	61594	chr2:216239965:-	INCL_NON_REF_SPLICE	YES	19332	17408	0.01	0.01	0.0372	1.2018	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0.01	0.01	1.239	TRUE	0	0	0	16	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	4	83	COL1A1	9381	chr17:48270394:-	FN1	26925	chr2:216295503:-	INCL_NON_REF_SPLICE	YES	21853	12119	0	0.01	0.0496	1.0283	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0	0.01	1.0779	TRUE	0	0	0	8	0	FALSE	ACH-000413
HS739T_FIBROBLAST	RP11-680G10.1--GSE1	22	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	9	1	0.74	0.2726	0.0496	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS739T_FIBROBLAST	0.74	1	0.3222	TRUE	465	1949	224	605	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	7	54	COL1A1	12367	chr17:48267408:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	21366	17113	0	0	0.0867	0.669	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0	0	0.7557	TRUE	0	0	0	13	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	3	65	COL1A1	11597	chr17:48268178:-	FN1	46072	chr2:216259284:-	INCL_NON_REF_SPLICE	YES	18924	12680	0	0.01	0.0372	0.8053	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0	0.01	0.8425	TRUE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	12	29	COL1A1	13242	chr17:48266533:-	FN1	63801	chr2:216236956:-	INCL_NON_REF_SPLICE	YES	20616	16539	0	0	0.1487	0.3593	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0	0	0.508	TRUE	0	0	0	8	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	3	64	COL1A1	12982	chr17:48266793:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	20035	17113	0	0	0.0372	0.7929	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0	0	0.8301	TRUE	0	0	0	17	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	11	30	COL1A1	7831	chr17:48271944:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	18755	17113	0	0	0.1363	0.3717	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0	0	0.508	TRUE	0	0	0	14	0	FALSE	ACH-000413
HS739T_FIBROBLAST	MT-TA--MT-TC	17	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2106	0.0124	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS739T_FIBROBLAST	1	1	0.223	FALSE	462	80	0	856	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	3	50	COL1A1	8418	chr17:48271357:-	FN1	53881	chr2:216248180:-	INCL_NON_REF_SPLICE	YES	20505	15106	0	0	0.0372	0.6195	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0	0	0.6567	TRUE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	RP11-680G10.1--GSE1	14	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1735	0.0743	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS739T_FIBROBLAST	1	1	0.2478	TRUE	458	1351	185	561	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	3	48	COL1A1	6963	chr17:48272812:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	19006	9747	0	0.01	0.0372	0.5947	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0	0.01	0.6319	TRUE	0	0	0	13	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	4	42	COL1A1	6826	chr17:48272949:-	FN1	22519	chr2:216300502:-	INCL_NON_REF_SPLICE	YES	18189	9035	0	0.01	0.0496	0.5204	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0	0.01	0.57	TRUE	0	0	0	13	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A2--COL13A1	14	1	COL1A2	23728	chr7:94051247:+	COL13A1	53946	chr10:71662541:+	INCL_NON_REF_SPLICE	YES	14004	75	0	0.17	0.1735	0.0124	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL13A1->chr10:71561644-71724031:+,collagen_type_XIII_alpha_1	HS739T_FIBROBLAST	0	0.17	0.1859	TRUE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--THBS1	3	43	COL1A1	13017	chr17:48266758:-	THBS1	23404	chr15:39874558:+	INCL_NON_REF_SPLICE	YES	20214	7281	0	0.01	0.0372	0.5327	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	HS739T_FIBROBLAST	0	0.01	0.5699	TRUE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	3	41	COL1A1	6820	chr17:48272955:-	FN1	22512	chr2:216300509:-	INCL_NON_REF_SPLICE	YES	18270	8849	0	0	0.0372	0.508	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0	0	0.5452	TRUE	0	0	0	13	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--SPARC	3	41	COL1A1	15346	chr17:48264429:-	SPARC	29572	chr5:151051156:-	INCL_NON_REF_SPLICE	YES	17873	8634	0	0.01	0.0372	0.508	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS739T_FIBROBLAST	0	0.01	0.5452	TRUE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	CTD-2337A12.1--CAST	13	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1611	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS739T_FIBROBLAST	1	1	0.1611	TRUE	347	1186	183	220	0	FALSE	ACH-000413
HS739T_FIBROBLAST	FBN1--COL1A2	12	1	FBN1	36840	chr15:48766823:-	COL1A2	83773	chr7:94037671:+	INCL_NON_REF_SPLICE	NO	1257	10402	0.01	0	0.1487	0.0124	FBN1->chr15:48700503-48938046:-,fibrillin_1,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS739T_FIBROBLAST	0	0.01	0.1611	FALSE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--SPARC	5	26	COL1A1	12958	chr17:48266817:-	SPARC	31839	chr5:151047095:-	INCL_NON_REF_SPLICE	YES	21093	9230	0	0	0.0619	0.3221	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS739T_FIBROBLAST	0	0	0.384	TRUE	0	0	0	2	0	FALSE	ACH-000413
HS739T_FIBROBLAST	RNASE10--PTGR1	10	5	RNASE10	1483	chr14:20974178:+	PTGR1	16126	chr9:114337122:-	ONLY_REF_SPLICE	YES	0	69	1	0.18	0.1239	0.0619	GTEx_FI:{Liver=[count:3=pct:2.5],Lung=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Small_Intestine=[count:1=pct:1.8],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Visceral_(Omentum)=2,Lung=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1},RNASE10->Oncogene{Bushman},chr14:20973696-20979328:+,ribonuclease_A_family_member_10_(inactive),PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	HS739T_FIBROBLAST	0.18	1	0.1858	TRUE	9	1	0	6	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	3	29	COL1A1	7994	chr17:48271781:-	FN1	62623	chr2:216238134:-	INCL_NON_REF_SPLICE	YES	19951	19306	0	0	0.0372	0.3593	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0	0	0.3965	TRUE	0	0	0	8	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	5	17	COL1A1	16066	chr17:48263709:-	FN1	65364	chr2:216235050:-	INCL_NON_REF_SPLICE	YES	16766	18539	0	0	0.0619	0.2106	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0	0	0.2725	TRUE	0	0	0	7	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--THBS1	7	8	COL1A1	13672	chr17:48266103:-	THBS1	34179	chr15:39885380:+	INCL_NON_REF_SPLICE	NO	18982	8001	0	0	0.0867	0.0991	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	HS739T_FIBROBLAST	0	0	0.1858	FALSE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	1	30	COL1A1	7693	chr17:48272082:-	FN1	58019	chr2:216244040:-	ONLY_REF_SPLICE	NO	18881	17260	0	0	0.0124	0.3717	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0	0	0.3841	TRUE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	PRR16--CTD-2334D19.1	7	6	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	32	0	0.29	1	0.0867	0.0743	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS739T_FIBROBLAST	0.29	1	0.161	FALSE	21	45	1	60	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--THBS1	4	17	COL1A1	10564	chr17:48269211:-	THBS1	30037	chr15:39881238:+	INCL_NON_REF_SPLICE	YES	18514	7066	0	0	0.0496	0.2106	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	HS739T_FIBROBLAST	0	0	0.2602	TRUE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	PRR16--CTD-2334D19.1	7	4	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	74	0	0.13	1	0.0867	0.0496	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS739T_FIBROBLAST	0.13	1	0.1363	FALSE	56	216	12	147	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	1	27	COL1A1	7367	chr17:48272408:-	FN1	59074	chr2:216242985:-	ONLY_REF_SPLICE	NO	21083	15958	0	0	0.0124	0.3345	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0	0	0.3469	TRUE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--THBS1	3	18	COL1A1	16929	chr17:48262846:-	THBS1	31540	chr15:39882741:+	INCL_NON_REF_SPLICE	YES	5501	4465	0	0	0.0372	0.223	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	HS739T_FIBROBLAST	0	0	0.2602	TRUE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--THBS1	3	18	COL1A1	8415	chr17:48271360:-	THBS1	29067	chr15:39880268:+	INCL_NON_REF_SPLICE	YES	20801	7349	0	0	0.0372	0.223	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	HS739T_FIBROBLAST	0	0	0.2602	TRUE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	4	13	COL1A1	6258	chr17:48273517:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	19250	17113	0	0	0.0496	0.1611	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0	0	0.2107	TRUE	0	0	0	10	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--THBS1	6	4	COL1A1	11544	chr17:48268231:-	THBS1	33710	chr15:39884911:+	INCL_NON_REF_SPLICE	YES	16731	9296	0	0	0.0743	0.0496	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	HS739T_FIBROBLAST	0	0	0.1239	TRUE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	FTH1--ACTB	7	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0867	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS739T_FIBROBLAST	1	1	0.0867	TRUE	1	0	0	97	0	FALSE	ACH-000413
HS739T_FIBROBLAST	MT-CO1--COL3A1	7	0	MT-CO1	1605	chrM:6508:+	COL3A1	28798	chr2:189872273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0867	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	HS739T_FIBROBLAST	1	1	0.0867	FALSE	0	0	0	12	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--SPARC	3	11	COL1A1	7669	chr17:48272106:-	SPARC	29565	chr5:151051163:-	INCL_NON_REF_SPLICE	YES	18239	8544	0	0	0.0372	0.1363	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS739T_FIBROBLAST	0	0	0.1735	TRUE	0	0	0	2	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--SPARC	3	11	COL1A1	7683	chr17:48272092:-	SPARC	29579	chr5:151051149:-	INCL_NON_REF_SPLICE	YES	17839	8402	0	0	0.0372	0.1363	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS739T_FIBROBLAST	0	0	0.1735	TRUE	0	0	0	2	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--THBS1	3	11	COL1A1	7678	chr17:48272097:-	THBS1	30288	chr15:39881489:+	INCL_NON_REF_SPLICE	YES	18132	7369	0	0	0.0372	0.1363	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	HS739T_FIBROBLAST	0	0	0.1735	TRUE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.88	0.78	0.0619	0.0248	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS739T_FIBROBLAST	0.78	0.88	0.0867	FALSE	515	4851	409	746	0	FALSE	ACH-000413
HS739T_FIBROBLAST	MT-ATP6--MT-CO1	5	1	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	7057	14431	0	0	0.0619	0.0124	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS739T_FIBROBLAST	0	0	0.0743	FALSE	183	104	9	328	0	FALSE	ACH-000413
HS739T_FIBROBLAST	MT-ATP6--MT-CO1	5	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8198	16667	0	0	0.0619	0.0124	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS739T_FIBROBLAST	0	0	0.0743	FALSE	183	104	9	328	0	FALSE	ACH-000413
HS739T_FIBROBLAST	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0619	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS739T_FIBROBLAST	1	1	0.0619	FALSE	292	1546	117	613	0	FALSE	ACH-000413
HS739T_FIBROBLAST	C15orf57--CBX3	4	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	35	11	0.17	0.39	0.0496	0.0372	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS739T_FIBROBLAST	0.17	0.39	0.0868	TRUE	267	562	48	632	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--FN1	4	3	COL1A1	4224	chr17:48275551:-	FN1	61577	chr2:216239982:-	INCL_NON_REF_SPLICE	YES	10096	17065	0	0	0.0496	0.0372	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS739T_FIBROBLAST	0	0	0.0868	FALSE	0	0	0	4	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--SPARC	3	7	COL1A1	6832	chr17:48272943:-	SPARC	32920	chr5:151046014:-	INCL_NON_REF_SPLICE	YES	18255	8843	0	0	0.0372	0.0867	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS739T_FIBROBLAST	0	0	0.1239	TRUE	0	0	0	2	0	FALSE	ACH-000413
HS739T_FIBROBLAST	MT-ATP6--MT-CO1	4	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	8198	0	0	1	0.0496	0.0372	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS739T_FIBROBLAST	0	1	0.0868	FALSE	182	97	9	327	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--THBS1	4	1	COL1A1	5766	chr17:48274009:-	THBS1	33702	chr15:39884903:+	INCL_NON_REF_SPLICE	YES	15064	8928	0	0	0.0496	0.0124	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	HS739T_FIBROBLAST	0	0	0.062	FALSE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	MT-ATP6--MT-CO1	4	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	6928	16364	0	0	0.0496	0.0124	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS739T_FIBROBLAST	0	0	0.062	FALSE	183	104	9	328	0	FALSE	ACH-000413
HS739T_FIBROBLAST	RP4-565E6.1--HYDIN	4	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0496	0.0124	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS739T_FIBROBLAST	1	1	0.062	TRUE	456	1387	91	133	0	FALSE	ACH-000413
HS739T_FIBROBLAST	FTH1--ACTB	4	0	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS739T_FIBROBLAST	1	1	0.0496	TRUE	1	0	0	97	0	FALSE	ACH-000413
HS739T_FIBROBLAST	THBS1--MT-CO3	4	0	THBS1	1091	chr15:39873370:+	MT-CO3	22403	chrM:9268:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0	THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HS739T_FIBROBLAST	1	1	0.0496	FALSE	0	0	0	3	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--SPARC	3	1	COL1A1	2564	chr17:48277211:-	SPARC	29508	chr5:151051220:-	INCL_NON_REF_SPLICE	YES	9445	7316	0	0	0.0372	0.0124	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS739T_FIBROBLAST	0	0	0.0496	FALSE	0	0	0	3	0	FALSE	ACH-000413
HS739T_FIBROBLAST	COL1A1--THBS1	3	1	COL1A1	2926	chr17:48276849:-	THBS1	36521	chr15:39887722:+	INCL_NON_REF_SPLICE	NO	10627	6378	0	0	0.0372	0.0124	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	HS739T_FIBROBLAST	0	0	0.0496	FALSE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	VIM--TPM2	3	0	VIM	2152	chr10:17271409:+	TPM2	13396	chr9:35689826:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS739T_FIBROBLAST	1	1	0.0372	TRUE	0	0	0	8	0	TRUE	ACH-000413
HS739T_FIBROBLAST	VIM--TPM2	3	0	VIM	2142	chr10:17271399:+	TPM2	13302	chr9:35689920:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS739T_FIBROBLAST	1	1	0.0372	TRUE	0	0	0	8	0	TRUE	ACH-000413
HS739T_FIBROBLAST	VIM--TPM2	3	0	VIM	2115	chr10:17271372:+	TPM2	13298	chr9:35689924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS739T_FIBROBLAST	1	1	0.0372	TRUE	0	0	0	8	0	TRUE	ACH-000413
HS739T_FIBROBLAST	EEF1DP3--FRY	2	2	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	NO	0	1	1	0.8	0.0248	0.0248	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS739T_FIBROBLAST	0.8	1	0.0496	FALSE	20	24	2	21	0	FALSE	ACH-000413
HS739T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0124	0.0372	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS739T_FIBROBLAST	1	1	0.0496	FALSE	76	45	6	15	0	FALSE	ACH-000413
HS739T_FIBROBLAST	FBN1--COL1A2	1	2	FBN1	60179	chr15:48719764:-	COL1A2	98237	chr7:94052269:+	ONLY_REF_SPLICE	YES	2094	14370	0	0	0.0124	0.0248	FBN1->chr15:48700503-48938046:-,fibrillin_1,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS739T_FIBROBLAST	0	0	0.0372	FALSE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	26	1	0.1	0.0124	0.0248	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS739T_FIBROBLAST	0.1	1	0.0372	TRUE	64	13	3	59	0	FALSE	ACH-000413
HS739T_FIBROBLAST	ATL2--HNRNPLL	1	1	ATL2	6688	chr2:38570410:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	YES	30	66	0.06	0.03	0.0124	0.0124	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	HS739T_FIBROBLAST	0.03	0.06	0.0248	TRUE	0	5	0	8	2	TRUE	ACH-000413
HS739T_FIBROBLAST	COL1A2--COL13A1	1	1	COL1A2	22855	chr7:94050374:+	COL13A1	46859	chr10:71647212:+	ONLY_REF_SPLICE	YES	13232	74	0	0.03	0.0124	0.0124	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL13A1->chr10:71561644-71724031:+,collagen_type_XIII_alpha_1	HS739T_FIBROBLAST	0	0.03	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	EEF1DP3--FRY	1	1	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	NO	0	1	1	0.67	0.0124	0.0124	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS739T_FIBROBLAST	0.67	1	0.0248	FALSE	18	26	2	21	0	FALSE	ACH-000413
HS739T_FIBROBLAST	FAM126A--RPA3-AS1	1	1	FAM126A	1206	chr7:23053544:-	RPA3-AS1	29922	chr7:7841301:+	ONLY_REF_SPLICE	YES	194	21	0.01	0.09	0.0124	0.0124	FAM126A->chr7:22980878-23053749:-,family_with_sequence_similarity_126_member_A,RPA3-AS1->chr7:7680342-8043689:+	HS739T_FIBROBLAST	0.01	0.09	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000413
HS739T_FIBROBLAST	GREM2--FMN2	1	1	GREM2	1266	chr1:240775184:-	FMN2	27193	chr1:240492376:+	ONLY_REF_SPLICE	YES	56	69	0.03	0.03	0.0124	0.0124	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[14384],GREM2->chr1:240652873-240775449:-,gremlin_2,_DAN_family_BMP_antagonist,FMN2->chr1:240177648-240638489:+,formin_2	HS739T_FIBROBLAST	0.03	0.03	0.0248	TRUE	0	0	0	2	0	FALSE	ACH-000413
HS739T_FIBROBLAST	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	4	0	0.33	1	0.0124	0.0124	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS739T_FIBROBLAST	0.33	1	0.0248	FALSE	125	705	46	456	0	FALSE	ACH-000413
QGP1_PANCREAS	SRSF4--OS9	457	219	SRSF4	1342	chr1:29508158:-	OS9	17831	chr12:58109543:+	ONLY_REF_SPLICE	YES	104	893	0.87	0.43	4.6452	2.2261	SRSF4->chr1:29474255-29508499:-,serine/arginine-rich_splicing_factor_4,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	QGP1_PANCREAS	0.43	0.87	6.8713	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	RP11-123O10.4--GRIP1	242	91	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	88	1	0.79	2.4598	0.925	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	QGP1_PANCREAS	0.79	1	3.3848	FALSE	416	2512	207	587	0	FALSE	ACH-000347
QGP1_PANCREAS	TIMM23B--LINC00843	123	64	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.2502	0.6505	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	QGP1_PANCREAS	0.99	1	1.9007	TRUE	508	994	45	981	0	FALSE	ACH-000347
QGP1_PANCREAS	MT-TA--MT-TN	138	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4027	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	QGP1_PANCREAS	1	1	1.4027	FALSE	369	2501	205	193	0	FALSE	ACH-000347
QGP1_PANCREAS	SLC38A2--PTMA	123	0	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2502	0	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	QGP1_PANCREAS	1	1	1.2502	TRUE	0	0	0	10	0	TRUE	ACH-000347
QGP1_PANCREAS	KDM6A--RP11-245M24.1	78	48	KDM6A	1477	chrX:44733233:+	RP11-245M24.1	43388	chrX:45461542:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.7928	0.4879	KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A,RP11-245M24.1->chrX:45364633-45489447:+	QGP1_PANCREAS	1	1	1.2807	TRUE	0	1	0	1	1	TRUE	ACH-000347
QGP1_PANCREAS	SLC16A7--CCDC60	68	57	SLC16A7	7982	chr12:60098799:+	CCDC60	27755	chr12:119866488:+	ONLY_REF_SPLICE	YES	30	0	0.81	1	0.6912	0.5794	SLC16A7->chr12:59989848-60176395:+,solute_carrier_family_16_member_7,CCDC60->chr12:119772517-119978852:+,coiled-coil_domain_containing_60	QGP1_PANCREAS	0.81	1	1.2706	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	TIMM23--RP11-464F9.1	79	9	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	397	6	0.18	0.94	0.803	0.0915	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	QGP1_PANCREAS	0.18	0.94	0.8945	TRUE	519	3926	326	965	0	FALSE	ACH-000347
QGP1_PANCREAS	MT-TA--MT-TC	60	12	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6099	0.122	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	QGP1_PANCREAS	1	1	0.7319	FALSE	462	80	0	856	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-507B12.1--RP11-507B12.2	60	8	RP11-507B12.1	1057	chr15:62007314:-	RP11-507B12.2	7470	chr15:61882202:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.6099	0.0813	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	QGP1_PANCREAS	0.99	1	0.6912	FALSE	0	23	0	4	0	FALSE	ACH-000347
QGP1_PANCREAS	STXBP5--RP11-307P5.1	47	44	STXBP5	25692	chr6:147674509:+	RP11-307P5.1	39403	chr6:148054865:+	ONLY_REF_SPLICE	YES	43	0	0.68	1	0.4777	0.4472	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,RP11-307P5.1->chr6:147981839-148275073:+	QGP1_PANCREAS	0.68	1	0.9249	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	RP11-507B12.1--RP11-507B12.2	54	8	RP11-507B12.1	1057	chr15:62007314:-	RP11-507B12.2	6395	chr15:61927688:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.5489	0.0813	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	QGP1_PANCREAS	0.98	1	0.6302	FALSE	0	0	0	4	0	FALSE	ACH-000347
QGP1_PANCREAS	DPH7--PTP4A3	55	0	DPH7	1297	chr9:140473091:-	PTP4A3	14726	chr8:142431487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5591	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:10=pct:2.7],Heart=[count:7=pct:2.8],Pituitary=[count:4=pct:7.7],Nerve=[count:2=pct:1.2],Esophagus=[count:2=pct:0.5],Colon=[count:2=pct:1.0],Lung=[count:2=pct:1.2],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Kidney=[count:1=pct:7.1],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},GTEx_v2:{count=46;pct=0.53%;dist=Artery_-_Tibial=9,Heart_-_Atrial_Appendage=9,Pituitary=6,Cells_-_EBV-transformed_lymphocytes=5,Artery_-_Aorta=3,Lung=2,Artery_-_Coronary=2,Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hypothalamus=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1,Testis=1},DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7,PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3	QGP1_PANCREAS	1	1	0.5591	TRUE	29	213	5	17	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-123O10.4--GRIP1	35	53	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	102	1	0.46	0.3558	0.5387	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	QGP1_PANCREAS	0.46	1	0.8945	FALSE	93	270	15	244	0	FALSE	ACH-000347
QGP1_PANCREAS	PRR4--STYK1	30	29	PRR4	1192	chr12:11324021:-	STYK1	37764	chr12:10772947:-	ONLY_REF_SPLICE	YES	41	71	0.59	0.45	0.3049	0.2948	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),STYK1->chr12:10771538-10826917:-,serine/threonine/tyrosine_kinase_1	QGP1_PANCREAS	0.45	0.59	0.5997	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	PRR4--MAGOHB	31	22	PRR4	1192	chr12:11324021:-	MAGOHB	26320	chr12:10763279:-	ONLY_REF_SPLICE	YES	41	199	0.56	0.21	0.3151	0.2236	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),MAGOHB->chr12:10758612-10766222:-,mago_homolog_B,_exon_junction_complex_core_component	QGP1_PANCREAS	0.21	0.56	0.5387	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	ZNF654--HMGB2	28	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2846	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	QGP1_PANCREAS	1	1	0.2846	TRUE	0	0	0	518	0	FALSE	ACH-000347
QGP1_PANCREAS	MT-TA--MT-TN	13	52	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.1321	0.5286	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	QGP1_PANCREAS	1	1	0.6607	FALSE	369	2501	205	193	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-96H19.1--RP11-446N19.1	20	22	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	7	0.89	0.86	0.2033	0.2236	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	QGP1_PANCREAS	0.86	0.89	0.4269	FALSE	515	4851	409	746	0	FALSE	ACH-000347
QGP1_PANCREAS	TTLL7--RP11-486G15.2	20	20	TTLL7	1220	chr1:84464614:-	RP11-486G15.2	39127	chr1:84543325:-	INCL_NON_REF_SPLICE	YES	105	11	0.28	0.78	0.2033	0.2033	LOCAL_REARRANGEMENT:-:[77181],TTLL7->chr1:84330711-84464833:-,tubulin_tyrosine_ligase_like_7,RP11-486G15.2->chr1:84542014-84543614:-	QGP1_PANCREAS	0.28	0.78	0.4066	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	RP11-123O10.4--GRIP1	1	91	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	NO	0	91	1	0.5	0.0102	0.925	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	QGP1_PANCREAS	0.5	1	0.9352	FALSE	9	21	5	22	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-123O10.4--DYRK2	16	14	RP11-123O10.4	1113	chr12:67462830:-	DYRK2	10033	chr12:68050886:+	ONLY_REF_SPLICE	YES	0	370	1	0.07	0.1626	0.1423	RP11-123O10.4->chr12:67285656-67462942:-,DYRK2->chr12:68042118-68059186:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_2	QGP1_PANCREAS	0.07	1	0.3049	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	MT-ND6--MT-TE	17	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1728	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	QGP1_PANCREAS	1	1	0.1728	FALSE	499	1288	110	792	0	FALSE	ACH-000347
QGP1_PANCREAS	SLC16A7--CCDC60	2	57	SLC16A7	11629	chr12:60129769:+	CCDC60	27755	chr12:119866488:+	ONLY_REF_SPLICE	YES	32	0	0.65	1	0.0203	0.5794	SLC16A7->chr12:59989848-60176395:+,solute_carrier_family_16_member_7,CCDC60->chr12:119772517-119978852:+,coiled-coil_domain_containing_60	QGP1_PANCREAS	0.65	1	0.5997	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	MT-TA--MT-TC	11	16	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1118	0.1626	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	QGP1_PANCREAS	1	1	0.2744	FALSE	462	80	0	856	0	FALSE	ACH-000347
QGP1_PANCREAS	KDM6A--RP11-245M24.1	2	50	KDM6A	1477	chrX:44733233:+	RP11-245M24.1	35746	chrX:45369742:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0.5082	KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A,RP11-245M24.1->chrX:45364633-45489447:+	QGP1_PANCREAS	1	1	0.5285	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	KDM6A--RP11-245M24.1	2	50	KDM6A	1477	chrX:44733233:+	RP11-245M24.1	36845	chrX:45380853:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0.5082	KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A,RP11-245M24.1->chrX:45364633-45489447:+	QGP1_PANCREAS	1	1	0.5285	TRUE	0	1	0	1	1	TRUE	ACH-000347
QGP1_PANCREAS	MT-TA--MT-TN	6	34	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0.3456	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	QGP1_PANCREAS	1	1	0.4066	FALSE	369	2501	205	193	0	FALSE	ACH-000347
QGP1_PANCREAS	STXBP5--RP11-307P5.1	8	26	STXBP5	25692	chr6:147674509:+	RP11-307P5.1	40486	chr6:148058453:+	ONLY_REF_SPLICE	YES	43	1	0.44	0.97	0.0813	0.2643	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,RP11-307P5.1->chr6:147981839-148275073:+	QGP1_PANCREAS	0.44	0.97	0.3456	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	MT-TA--MT-TN	6	33	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0.3354	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	QGP1_PANCREAS	1	1	0.3964	FALSE	369	2501	205	193	0	FALSE	ACH-000347
QGP1_PANCREAS	NPM1P24--SET	14	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	27	1977	0.36	0.01	0.1423	0.0102	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	QGP1_PANCREAS	0.01	0.36	0.1525	TRUE	0	0	0	434	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-444D3.1--SOX5	12	9	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	30	1	0.41	0.122	0.0915	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	QGP1_PANCREAS	0.41	1	0.2135	TRUE	477	1352	189	275	0	FALSE	ACH-000347
QGP1_PANCREAS	MT-TA--MT-TN	4	39	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0.3964	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	QGP1_PANCREAS	1	1	0.4371	FALSE	369	2501	205	193	0	FALSE	ACH-000347
QGP1_PANCREAS	KDM6A--RP11-245M24.1	12	6	KDM6A	1477	chrX:44733233:+	RP11-245M24.1	45145	chrX:45489318:+	ONLY_REF_SPLICE	YES	0	5	1	0.78	0.122	0.061	KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A,RP11-245M24.1->chrX:45364633-45489447:+	QGP1_PANCREAS	0.78	1	0.183	TRUE	0	1	0	1	1	TRUE	ACH-000347
QGP1_PANCREAS	RP11-108K3.1--GLDN	8	21	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	4	0	0.88	1	0.0813	0.2135	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	QGP1_PANCREAS	0.88	1	0.2948	FALSE	0	19	0	46	0	FALSE	ACH-000347
QGP1_PANCREAS	MT-ATP6--MT-CO2	11	8	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	58	6	0.25	0.76	0.1118	0.0813	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	QGP1_PANCREAS	0.25	0.76	0.1931	FALSE	59	21	0	114	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-96H19.1--RP11-446N19.1	6	27	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.87	1	0.061	0.2744	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	QGP1_PANCREAS	0.87	1	0.3354	FALSE	407	2205	196	549	0	FALSE	ACH-000347
QGP1_PANCREAS	STXBP5--RP11-307P5.1	1	47	STXBP5	25692	chr6:147674509:+	RP11-307P5.1	37232	chr6:147997211:+	ONLY_REF_SPLICE	YES	43	0	0.53	1	0.0102	0.4777	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,RP11-307P5.1->chr6:147981839-148275073:+	QGP1_PANCREAS	0.53	1	0.4879	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	C15orf57--CBX3	10	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	86	53	0.19	0.27	0.1016	0.1016	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	QGP1_PANCREAS	0.19	0.27	0.2032	TRUE	267	562	48	632	0	FALSE	ACH-000347
QGP1_PANCREAS	MT-TA--MT-TN	12	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.122	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	QGP1_PANCREAS	1	1	0.122	FALSE	369	2501	205	193	0	FALSE	ACH-000347
QGP1_PANCREAS	AC011747.4--AC011747.6	10	7	AC011747.4	4586	chr2:8717041:-	AC011747.6	19130	chr2:8747931:-	ONLY_REF_SPLICE	YES	38	0	0.31	1	0.1016	0.0712	LOCAL_REARRANGEMENT:-:[17100],AC011747.4->chr2:8699963-8723922:-,AC011747.6->chr2:8741022-8763072:-	QGP1_PANCREAS	0.31	1	0.1728	TRUE	0	1	0	1	1	TRUE	ACH-000347
QGP1_PANCREAS	MT-TA--MT-TN	8	14	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0813	0.1423	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	QGP1_PANCREAS	1	1	0.2236	FALSE	369	2501	205	193	0	FALSE	ACH-000347
QGP1_PANCREAS	PMS2--EIF2AK1	11	2	PMS2	6565	chr7:6038739:-	EIF2AK1	22531	chr7:6094335:-	ONLY_REF_SPLICE	YES	99	268	0.12	0.05	0.1118	0.0203	LOCAL_REARRANGEMENT:-:[13125],PMS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},PMS1_homolog_2,_mismatch_repair_system_component,chr7:6012870-6048756:-,EIF2AK1->chr7:6061881-6098861:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_1	QGP1_PANCREAS	0.05	0.12	0.1321	TRUE	0	0	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-507B12.1--RP11-507B12.2	10	4	RP11-507B12.1	1057	chr15:62007314:-	RP11-507B12.2	8558	chr15:61799439:-	ONLY_REF_SPLICE	YES	1	6	0.93	0.7	0.1016	0.0407	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	QGP1_PANCREAS	0.7	0.93	0.1423	FALSE	0	11	0	4	0	FALSE	ACH-000347
QGP1_PANCREAS	SAMD5--SASH1	10	4	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	28	14	0.33	0.5	0.1016	0.0407	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	QGP1_PANCREAS	0.33	0.5	0.1423	TRUE	53	396	64	110	0	FALSE	ACH-000347
QGP1_PANCREAS	STXBP5--RP11-307P5.1	2	33	STXBP5	23435	chr6:147655358:+	RP11-307P5.1	39403	chr6:148054865:+	ONLY_REF_SPLICE	YES	64	0	0.35	1	0.0203	0.3354	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,RP11-307P5.1->chr6:147981839-148275073:+	QGP1_PANCREAS	0.35	1	0.3557	TRUE	0	1	0	1	1	TRUE	ACH-000347
QGP1_PANCREAS	C15orf57--CBX3	6	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	87	50	0.2	0.31	0.061	0.1626	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	QGP1_PANCREAS	0.2	0.31	0.2236	TRUE	267	562	48	632	0	FALSE	ACH-000347
QGP1_PANCREAS	MT-TA--MT-TC	7	11	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0712	0.1118	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	QGP1_PANCREAS	1	1	0.183	FALSE	462	80	0	856	0	FALSE	ACH-000347
QGP1_PANCREAS	MT-ATP6--MT-CO2	7	10	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	59	6	0.22	0.74	0.0712	0.1016	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	QGP1_PANCREAS	0.22	0.74	0.1728	FALSE	59	21	0	114	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-96H19.1--RP11-446N19.1	4	22	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	7	1	0.79	0.0407	0.2236	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	QGP1_PANCREAS	0.79	1	0.2643	FALSE	467	2173	244	435	0	FALSE	ACH-000347
QGP1_PANCREAS	SLC16A12--LIPA	7	8	SLC16A12	5062	chr10:91222136:-	LIPA	29664	chr10:91007406:-	ONLY_REF_SPLICE	YES	100	166	0.13	0.08	0.0712	0.0813	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	QGP1_PANCREAS	0.08	0.13	0.1525	FALSE	12	128	21	13	0	FALSE	ACH-000347
QGP1_PANCREAS	CALCA--RPS28	8	0	CALCA	1049	chr11:14993852:-	RPS28	9980	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0813	0	CALCA->Oncogene{Bushman},calcitonin_related_polypeptide_alpha,chr11:14988214-14993900:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	QGP1_PANCREAS	1	1	0.0813	TRUE	0	0	0	2	0	TRUE	ACH-000347
QGP1_PANCREAS	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0813	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	QGP1_PANCREAS	1	1	0.0813	FALSE	462	80	0	856	0	FALSE	ACH-000347
QGP1_PANCREAS	MT-TA--MT-TN	4	15	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0.1525	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	QGP1_PANCREAS	1	1	0.1932	FALSE	369	2501	205	193	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-123O10.4--DYRK2	4	15	RP11-123O10.4	1113	chr12:67462830:-	DYRK2	6652	chr12:68043577:+	ONLY_REF_SPLICE	YES	0	113	1	0.14	0.0407	0.1525	RP11-123O10.4->chr12:67285656-67462942:-,DYRK2->chr12:68042118-68059186:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_2	QGP1_PANCREAS	0.14	1	0.1932	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	SLC6A6--RP11-708B6.2	6	7	SLC6A6	3615	chr3:14457961:+	RP11-708B6.2	29350	chr11:109286897:-	ONLY_REF_SPLICE	YES	34	0	0.28	1	0.061	0.0712	SLC6A6->chr3:14444076-14530857:+,solute_carrier_family_6_member_6,RP11-708B6.2->chr11:109225812-109454633:-	QGP1_PANCREAS	0.28	1	0.1322	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	MT-ATP6--MT-CO2	5	9	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	58	6	0.19	0.7	0.0508	0.0915	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	QGP1_PANCREAS	0.19	0.7	0.1423	FALSE	59	21	0	114	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-120D5.1--MID1	7	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	15	0.8	0.35	0.0712	0.0102	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	QGP1_PANCREAS	0.35	0.8	0.0814	FALSE	16	356	14	466	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-108K3.1--GLDN	4	12	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0407	0.122	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	QGP1_PANCREAS	0.94	1	0.1627	FALSE	0	30	1	55	0	FALSE	ACH-000347
QGP1_PANCREAS	KDM6A--RP11-245M24.1	4	11	KDM6A	1477	chrX:44733233:+	RP11-245M24.1	44531	chrX:45488704:+	ONLY_REF_SPLICE	YES	0	2	1	0.88	0.0407	0.1118	KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A,RP11-245M24.1->chrX:45364633-45489447:+	QGP1_PANCREAS	0.88	1	0.1525	TRUE	0	1	0	1	1	TRUE	ACH-000347
QGP1_PANCREAS	SLC7A5--ACTG1	6	2	SLC7A5	8068	chr16:87871474:-	ACTG1	21178	chr17:79478603:-	INCL_NON_REF_SPLICE	YES	3714	8762	0	0	0.061	0.0203	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	QGP1_PANCREAS	0	0	0.0813	FALSE	0	0	0	11	0	FALSE	ACH-000347
QGP1_PANCREAS	MT-ATP6--MT-CO2	5	4	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	44	6	0.17	0.6	0.0508	0.0407	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	QGP1_PANCREAS	0.17	0.6	0.0915	FALSE	59	21	0	114	0	FALSE	ACH-000347
QGP1_PANCREAS	MT-ND6--MT-TE	6	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	QGP1_PANCREAS	1	1	0.061	FALSE	499	1288	110	792	0	FALSE	ACH-000347
QGP1_PANCREAS	MT-TA--MT-TN	6	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	QGP1_PANCREAS	1	1	0.061	FALSE	369	2501	205	193	0	FALSE	ACH-000347
QGP1_PANCREAS	RAP1B--AC068535.4	6	0	RAP1B	15072	chr12:69053773:+	AC068535.4	19991	chr2:105121504:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0	RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+,AC068535.4->chr2:105104916-105126967:-	QGP1_PANCREAS	1	1	0.061	TRUE	0	0	0	4	0	TRUE	ACH-000347
QGP1_PANCREAS	RP11-108K3.1--GLDN	1	19	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	4	0	0.83	1	0.0102	0.1931	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	QGP1_PANCREAS	0.83	1	0.2033	FALSE	0	14	0	30	0	FALSE	ACH-000347
QGP1_PANCREAS	CCDC91--CRTC3	4	6	CCDC91	27013	chr12:28702063:+	CRTC3	38160	chr15:91136868:+	ONLY_REF_SPLICE	YES	135	48	0.07	0.17	0.0407	0.061	{Klijn_CCL:Pancreas=1},CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,CRTC3->CREB_regulated_transcription_coactivator_3,Oncogene{Bushman},chr15:91073157-91188577:+	QGP1_PANCREAS	0.07	0.17	0.1017	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	RP11-680G10.1--GSE1	5	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	280	1	0.02	0.0508	0.0203	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	QGP1_PANCREAS	0.02	1	0.0711	TRUE	465	1949	224	605	0	FALSE	ACH-000347
QGP1_PANCREAS	SLC16A12--LIPA	3	10	SLC16A12	5062	chr10:91222136:-	LIPA	18335	chr10:91172679:-	ONLY_REF_SPLICE	YES	100	0	0.12	1	0.0305	0.1016	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	QGP1_PANCREAS	0.12	1	0.1321	FALSE	0	24	3	7	0	FALSE	ACH-000347
QGP1_PANCREAS	STXBP5--RP11-307P5.1	1	18	STXBP5	23435	chr6:147655358:+	RP11-307P5.1	40486	chr6:148058453:+	ONLY_REF_SPLICE	YES	64	1	0.23	0.95	0.0102	0.183	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,RP11-307P5.1->chr6:147981839-148275073:+	QGP1_PANCREAS	0.23	0.95	0.1932	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	DPH6-AS1--RP11-684B21.1	5	1	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	8	0	0.43	1	0.0508	0.0102	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	QGP1_PANCREAS	0.43	1	0.061	TRUE	17	119	17	33	0	FALSE	ACH-000347
QGP1_PANCREAS	LINC01014--KCNMB2	5	1	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	4	10	0.6	0.38	0.0508	0.0102	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	QGP1_PANCREAS	0.38	0.6	0.061	FALSE	12	33	18	33	0	FALSE	ACH-000347
QGP1_PANCREAS	LINC01014--KCNMB2	5	1	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	4	12	0.6	0.33	0.0508	0.0102	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	QGP1_PANCREAS	0.33	0.6	0.061	FALSE	11	60	26	37	0	FALSE	ACH-000347
QGP1_PANCREAS	MT-ND5--MT-ND6	4	5	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	2	3537	0.82	0	0.0407	0.0508	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	QGP1_PANCREAS	0	0.82	0.0915	FALSE	26	124	4	93	0	FALSE	ACH-000347
QGP1_PANCREAS	PTPRN2--NCAPG2	3	9	PTPRN2	1231	chr7:158380250:-	NCAPG2	57023	chr7:158447386:-	ONLY_REF_SPLICE	YES	94	276	0.11	0.04	0.0305	0.0915	LOCAL_REARRANGEMENT:-:[43523],PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,NCAPG2->chr7:158424003-158497520:-,non-SMC_condensin_II_complex_subunit_G2	QGP1_PANCREAS	0.04	0.11	0.122	TRUE	0	0	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	PTPRN2--NCAPG2	3	8	PTPRN2	1231	chr7:158380250:-	NCAPG2	60452	chr7:158439255:-	ONLY_REF_SPLICE	YES	94	243	0.1	0.04	0.0305	0.0813	LOCAL_REARRANGEMENT:-:[43523],PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,NCAPG2->chr7:158424003-158497520:-,non-SMC_condensin_II_complex_subunit_G2	QGP1_PANCREAS	0.04	0.1	0.1118	TRUE	0	0	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-353N4.6--SRGAP2B	4	4	RP11-353N4.6	2219	chr1:149576700:+	SRGAP2B	16454	chr1:143915700:+	ONLY_REF_SPLICE	YES	375	42	0.02	0.16	0.0407	0.0407	RP11-353N4.6->chr1:149575482-149616786:+,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	QGP1_PANCREAS	0.02	0.16	0.0814	TRUE	0	1	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-686O6.2--MPP4	4	4	RP11-686O6.2	1438	chr2:203239890:-	MPP4	6440	chr2:202558777:-	INCL_NON_REF_SPLICE	YES	7	0	0.53	1	0.0407	0.0407	RP11-686O6.2->chr2:203239655-203240327:-,MPP4->chr2:202509593-202563417:-,membrane_palmitoylated_protein_4	QGP1_PANCREAS	0.53	1	0.0814	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	RP11-507B12.1--RP11-507B12.2	4	3	RP11-507B12.1	1057	chr15:62007314:-	RP11-507B12.2	9621	chr15:61692630:-	ONLY_REF_SPLICE	YES	1	6	0.88	0.54	0.0407	0.0305	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	QGP1_PANCREAS	0.54	0.88	0.0712	FALSE	0	8	0	2	0	FALSE	ACH-000347
QGP1_PANCREAS	AC011747.4--AC011747.6	2	10	AC011747.4	5720	chr2:8710578:-	AC011747.6	19130	chr2:8747931:-	ONLY_REF_SPLICE	YES	21	0	0.36	1	0.0203	0.1016	LOCAL_REARRANGEMENT:-:[17100],AC011747.4->chr2:8699963-8723922:-,AC011747.6->chr2:8741022-8763072:-	QGP1_PANCREAS	0.36	1	0.1219	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	MT-ND6--MT-TE	4	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.67	1	0.0407	0.0203	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	QGP1_PANCREAS	0.67	1	0.061	FALSE	499	1288	110	792	0	FALSE	ACH-000347
QGP1_PANCREAS	DNAJC24--IMMP1L	4	1	DNAJC24	2020	chr11:31392406:+	IMMP1L	34941	chr11:31455117:-	ONLY_REF_SPLICE	YES	207	444	0.02	0.01	0.0407	0.0102	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Nerve_-_Tibial=2,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Pancreas=1},LOCAL_INVERSION:+:-:[552],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	QGP1_PANCREAS	0.01	0.02	0.0509	FALSE	0	4	0	9	1	FALSE	ACH-000347
QGP1_PANCREAS	FTH1--ACTG1	4	1	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	5016	11	0	0.31	0.0407	0.0102	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	QGP1_PANCREAS	0	0.31	0.0509	FALSE	0	0	0	64	0	FALSE	ACH-000347
QGP1_PANCREAS	MT-ND5--MT-ND6	3	5	MT-ND5	2761	chrM:14097:+	MT-ND6	6169	chrM:14317:-	INCL_NON_REF_SPLICE	YES	0	3689	1	0	0.0305	0.0508	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	QGP1_PANCREAS	0	1	0.0813	FALSE	26	124	4	93	0	FALSE	ACH-000347
QGP1_PANCREAS	CCDC91--CRTC3	3	4	CCDC91	25881	chr12:28637098:+	CRTC3	38160	chr15:91136868:+	ONLY_REF_SPLICE	YES	153	48	0.04	0.13	0.0305	0.0407	{Klijn_CCL:Pancreas=1},CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,CRTC3->CREB_regulated_transcription_coactivator_3,Oncogene{Bushman},chr15:91073157-91188577:+	QGP1_PANCREAS	0.04	0.13	0.0712	TRUE	0	0	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-319G9.5--WWOX	4	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	QGP1_PANCREAS	1	1	0.0407	FALSE	154	425	28	76	0	FALSE	ACH-000347
QGP1_PANCREAS	ZNF654--HMGB2	4	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	QGP1_PANCREAS	1	1	0.0407	TRUE	0	0	0	518	0	FALSE	ACH-000347
QGP1_PANCREAS	GNGT1--AC002076.10	3	3	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	9	0	0.4	1	0.0305	0.0305	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	QGP1_PANCREAS	0.4	1	0.061	FALSE	0	10	0	30	0	FALSE	ACH-000347
QGP1_PANCREAS	GNGT1--AC002076.10	3	3	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0305	0.0305	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	QGP1_PANCREAS	0.55	1	0.061	FALSE	0	28	0	37	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-108K3.1--GLDN	1	11	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0102	0.1118	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	QGP1_PANCREAS	0.92	1	0.122	FALSE	1	20	0	46	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-108K3.1--GLDN	1	10	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	1	1	0.92	0.92	0.0102	0.1016	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	QGP1_PANCREAS	0.92	0.92	0.1118	FALSE	1	20	0	46	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-785H5.2--STYK1	3	2	RP11-785H5.2	1087	chr12:11323866:-	STYK1	18814	chr12:10772947:-	ONLY_REF_SPLICE	YES	0	71	1	0.07	0.0305	0.0203	RP11-785H5.2->chr12:11318689-11323952:-,STYK1->chr12:10771538-10826917:-,serine/threonine/tyrosine_kinase_1	QGP1_PANCREAS	0.07	1	0.0508	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	FGF14-IT1--FGF14	3	1	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	40	1	0.09	0.0305	0.0102	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	QGP1_PANCREAS	0.09	1	0.0407	TRUE	71	201	23	28	0	FALSE	ACH-000347
QGP1_PANCREAS	FRS2--RAP1B	2	5	FRS2	1182	chr12:69864310:+	RAP1B	29164	chr12:69042479:+	ONLY_REF_SPLICE	YES	249	5394	0.03	0	0.0203	0.0508	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+	QGP1_PANCREAS	0	0.03	0.0711	FALSE	0	0	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	NPM1P24--SET	3	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	27	1801	0.13	0	0.0305	0.0102	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	QGP1_PANCREAS	0	0.13	0.0407	FALSE	0	0	0	434	0	FALSE	ACH-000347
QGP1_PANCREAS	RABGAP1L--RP11-669M2.1	2	5	RABGAP1L	36540	chr1:174846743:+	RP11-669M2.1	56879	chr1:188504887:+	ONLY_REF_SPLICE	YES	151	0	0.04	1	0.0203	0.0508	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,RP11-669M2.1->chr1:188477669-188505596:+	QGP1_PANCREAS	0.04	1	0.0711	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	VTI1A--RP11-57H14.3	3	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	72	0	0.05	1	0.0305	0.0102	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	QGP1_PANCREAS	0.05	1	0.0407	FALSE	272	151	14	158	0	FALSE	ACH-000347
QGP1_PANCREAS	EIF1--RPL5	3	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	QGP1_PANCREAS	1	1	0.0305	TRUE	0	0	0	39	0	FALSE	ACH-000347
QGP1_PANCREAS	IMMP1L--ELP4	3	0	IMMP1L	1127	chr11:31531066:-	ELP4	22162	chr11:31616317:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	LOCAL_INVERSION:-:+:[105],IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1,ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4	QGP1_PANCREAS	1	1	0.0305	TRUE	0	0	0	2	0	TRUE	ACH-000347
QGP1_PANCREAS	MATR3--CTNNA1	3	0	MATR3	9772	chr5:138629494:+	CTNNA1	45982	chr5:138145727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	QGP1_PANCREAS	1	1	0.0305	TRUE	3	14	0	14	0	FALSE	ACH-000347
QGP1_PANCREAS	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	QGP1_PANCREAS	1	1	0.0305	FALSE	292	1546	117	613	0	FALSE	ACH-000347
QGP1_PANCREAS	NRIP1--AF127936.7	3	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	QGP1_PANCREAS	1	1	0.0305	FALSE	125	705	46	456	0	FALSE	ACH-000347
QGP1_PANCREAS	SLC16A12--LIPA	1	8	SLC16A12	10150	chr10:91195817:-	LIPA	26550	chr10:91038260:-	ONLY_REF_SPLICE	NO	123	5	0.07	0.64	0.0102	0.0813	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	QGP1_PANCREAS	0.07	0.64	0.0915	FALSE	0	0	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-680G10.1--GSE1	2	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	25	1	0.14	0.0203	0.0203	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	QGP1_PANCREAS	0.14	1	0.0406	TRUE	458	1351	185	561	0	FALSE	ACH-000347
QGP1_PANCREAS	GATS--PILRB	2	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	46	188	0.06	0.02	0.0203	0.0102	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	QGP1_PANCREAS	0.02	0.06	0.0305	TRUE	57	41	2	35	0	FALSE	ACH-000347
QGP1_PANCREAS	NBR2--ALDH3A2	2	1	NBR2	1161	chr17:41277787:+	ALDH3A2	18743	chr17:19559679:+	ONLY_REF_SPLICE	YES	97	662	0.03	0	0.0203	0.0102	NBR2->chr17:41277627-41305688:+,neighbor_of_BRCA1_gene_2_(non-protein_coding),ALDH3A2->aldehyde_dehydrogenase_3_family_member_A2,chr17:19551449-19580911:+	QGP1_PANCREAS	0	0.03	0.0305	FALSE	0	2	0	4	0	FALSE	ACH-000347
QGP1_PANCREAS	RTN4RL2--FAM111A	2	1	RTN4RL2	1348	chr11:57228369:+	FAM111A	13698	chr11:58916309:+	ONLY_REF_SPLICE	YES	5	57	0.38	0.05	0.0203	0.0102	RTN4RL2->chr11:57228022-57245007:+,reticulon_4_receptor-like_2,FAM111A->chr11:58910221-58922512:+,family_with_sequence_similarity_111_member_A	QGP1_PANCREAS	0.05	0.38	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	STX18-AS1--MSX1	2	1	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	4	3	0.43	0.5	0.0203	0.0102	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	QGP1_PANCREAS	0.43	0.5	0.0305	TRUE	37	101	7	40	0	FALSE	ACH-000347
QGP1_PANCREAS	ATP2B1--AGK	2	0	ATP2B1	1082	chr12:90102996:-	AGK	33574	chr7:141292946:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ATP2B1->ATPase_plasma_membrane_Ca2+_transporting_1,chr12:89981828-90103077:-,AGK->acylglycerol_kinase,chr7:141250989-141355044:+	QGP1_PANCREAS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	CHM--MTX2	2	0	CHM	5114	chrX:85233771:-	MTX2	29107	chr2:177161588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CHM->CHM,_Rab_escort_protein_1,chrX:85116185-85302566:-,MTX2->chr2:177134123-177202753:+,metaxin_2	QGP1_PANCREAS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	DLGAP1-AS1--MPPE1	2	0	DLGAP1-AS1	1509	chr18:3594238:+	MPPE1	19119	chr18:11889489:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	DLGAP1-AS1->DLGAP1_antisense_RNA_1,chr18:3593730-3598350:+,MPPE1->Oncogene{Bushman},chr18:11882621-11909222:-,metallophosphoesterase_1	QGP1_PANCREAS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	ELP4--IMMP1L	2	0	ELP4	2294	chr11:31541638:+	IMMP1L	25447	chr11:31477933:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:+:-:[105],ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	QGP1_PANCREAS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	LINC00299--AC007464.1	2	0	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	QGP1_PANCREAS	1	1	0.0203	TRUE	67	49	0	25	0	FALSE	ACH-000347
QGP1_PANCREAS	PDE1C--CCDC50	2	0	PDE1C	34090	chr7:31815278:-	CCDC50	48132	chr3:191097948:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	PDE1C->chr7:31790793-32338941:-,phosphodiesterase_1C,CCDC50->chr3:191046866-191116459:+,coiled-coil_domain_containing_50	QGP1_PANCREAS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	RCC1--RALYL	2	0	RCC1	2175	chr1:28834672:+	RALYL	23357	chr8:85441534:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	QGP1_PANCREAS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	RP11-357C3.3--ARHGEF9	2	0	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	31030	chrX:62875617:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	QGP1_PANCREAS	1	1	0.0203	TRUE	0	1	0	2	0	TRUE	ACH-000347
QGP1_PANCREAS	RP11-6N17.4--FAM134C	2	0	RP11-6N17.4	2913	chr17:45971266:-	FAM134C	13662	chr17:40744180:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	RP11-6N17.4->chr17:45968621-45973178:-,FAM134C->chr17:40731531-40762641:-,family_with_sequence_similarity_134_member_C	QGP1_PANCREAS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	QGP1_PANCREAS	1	1	0.0203	TRUE	62	24	1	171	0	FALSE	ACH-000347
QGP1_PANCREAS	ZNF567--PPP6R1	2	0	ZNF567	2173	chr19:37180399:+	PPP6R1	29358	chr19:55743579:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ZNF567->chr19:37178514-37218603:+,zinc_finger_protein_567,PPP6R1->chr19:55741148-55770363:-,protein_phosphatase_6_regulatory_subunit_1	QGP1_PANCREAS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	CLNS1A--RSF1	1	3	CLNS1A	7108	chr11:77330651:-	RSF1	23106	chr11:77475734:-	ONLY_REF_SPLICE	YES	844	151	0	0.03	0.0102	0.0305	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:-:[22191],CLNS1A->chloride_nucleotide-sensitive_channel_1A,chr11:77225981-77348850:-,RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1	QGP1_PANCREAS	0	0.03	0.0407	FALSE	0	0	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	2	30	0.67	0.12	0.0102	0.0305	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	QGP1_PANCREAS	0.12	0.67	0.0407	TRUE	16	11	2	20	0	FALSE	ACH-000347
QGP1_PANCREAS	RTN4RL2--FAM111A	1	3	RTN4RL2	1348	chr11:57228369:+	FAM111A	12077	chr11:58913300:+	ONLY_REF_SPLICE	YES	5	21	0.44	0.16	0.0102	0.0305	RTN4RL2->chr11:57228022-57245007:+,reticulon_4_receptor-like_2,FAM111A->chr11:58910221-58922512:+,family_with_sequence_similarity_111_member_A	QGP1_PANCREAS	0.16	0.44	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	ATL2--SLC8A1	1	2	ATL2	1143	chr2:38604285:-	SLC8A1	32960	chr2:40404995:-	ONLY_REF_SPLICE	YES	197	3	0.01	0.5	0.0102	0.0203	ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,SLC8A1->chr2:40324410-40838193:-,solute_carrier_family_8_member_A1	QGP1_PANCREAS	0.01	0.5	0.0305	FALSE	0	0	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	CALCA--MYH9	1	2	CALCA	4479	chr11:14990372:-	MYH9	34545	chr22:36696310:-	ONLY_REF_SPLICE	YES	23924	492	0	0.01	0.0102	0.0203	CALCA->Oncogene{Bushman},calcitonin_related_polypeptide_alpha,chr11:14988214-14993900:-,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	QGP1_PANCREAS	0	0.01	0.0305	FALSE	0	0	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	RNF152--RP11-879F14.1	1	2	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	16	0	0.16	1	0.0102	0.0203	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	QGP1_PANCREAS	0.16	1	0.0305	FALSE	275	472	65	43	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-353N4.6--SRGAP2B	1	2	RP11-353N4.6	3181	chr1:149577662:+	SRGAP2B	18063	chr1:144013901:+	ONLY_REF_SPLICE	YES	387	121	0.01	0.02	0.0102	0.0203	RP11-353N4.6->chr1:149575482-149616786:+,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	QGP1_PANCREAS	0.01	0.02	0.0305	FALSE	0	1	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	RTN4RL2--FAM111A	1	2	RTN4RL2	1348	chr11:57228369:+	FAM111A	13566	chr11:58916177:+	ONLY_REF_SPLICE	NO	5	49	0.38	0.06	0.0102	0.0203	RTN4RL2->chr11:57228022-57245007:+,reticulon_4_receptor-like_2,FAM111A->chr11:58910221-58922512:+,family_with_sequence_similarity_111_member_A	QGP1_PANCREAS	0.06	0.38	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	SLC16A12--LIPA	1	2	SLC16A12	5062	chr10:91222136:-	LIPA	31894	chr10:90988155:-	ONLY_REF_SPLICE	YES	100	489	0.03	0.01	0.0102	0.0203	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	QGP1_PANCREAS	0.01	0.03	0.0305	FALSE	1	4	0	2	0	FALSE	ACH-000347
QGP1_PANCREAS	ATP2C2--USO1	1	1	ATP2C2	2299	chr16:84432215:+	USO1	44641	chr4:76720775:+	ONLY_REF_SPLICE	YES	395	397	0.01	0.01	0.0102	0.0102	ATP2C2->ATPase_secretory_pathway_Ca2+_transporting_2,chr16:84402133-84497793:+,USO1->USO1_vesicle_transport_factor,chr4:76649777-76735382:+	QGP1_PANCREAS	0.01	0.01	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	COX19--SUN1	1	1	COX19	10973	chr7:959605:-	SUN1	43001	chr7:908986:+	ONLY_REF_SPLICE	YES	153	338	0.01	0.01	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},LOCAL_INVERSION:-:+:[2343],COX19->COX19_cytochrome_c_oxidase_assembly_factor,Oncogene{Bushman},chr7:938415-1015235:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	QGP1_PANCREAS	0.01	0.01	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	DANCR--GNB1	1	1	DANCR	1530	chr4:53579126:+	GNB1	9431	chr1:1770677:-	ONLY_REF_SPLICE	YES	492	28	0	0.07	0.0102	0.0102	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	QGP1_PANCREAS	0	0.07	0.0204	FALSE	0	0	0	8	0	FALSE	ACH-000347
QGP1_PANCREAS	ELP4--IMMP1L	1	1	ELP4	10185	chr11:31671769:+	IMMP1L	30795	chr11:31455117:-	ONLY_REF_SPLICE	NO	582	444	0	0	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:+:-:[105],ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	QGP1_PANCREAS	0	0	0.0204	FALSE	0	1	0	1	1	FALSE	ACH-000347
QGP1_PANCREAS	ENSA--DHX30	1	1	ENSA	4564	chr1:150598118:-	DHX30	18849	chr3:47859512:+	ONLY_REF_SPLICE	YES	1245	48	0	0.04	0.0102	0.0102	ENSA->chr1:150573327-150602088:-,endosulfine_alpha,DHX30->DEAH-box_helicase_30,chr3:47844399-47891685:+	QGP1_PANCREAS	0	0.04	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	FAM168A--RAB6A	1	1	FAM168A	1267	chr11:73308968:-	RAB6A	21682	chr11:73441868:-	ONLY_REF_SPLICE	NO	100	706	0.02	0	0.0102	0.0102	LOCAL_REARRANGEMENT:-:[77449],FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A,RAB6A->RAB6A,_member_RAS_oncogene_family,chr11:73386683-73472182:-	QGP1_PANCREAS	0	0.02	0.0204	FALSE	0	1	0	4	1	FALSE	ACH-000347
QGP1_PANCREAS	HNRNPA2B1--RPL4	1	1	HNRNPA2B1	1958	chr7:26240192:-	RPL4	19328	chr15:66795209:-	ONLY_REF_SPLICE	YES	4374	7159	0	0	0.0102	0.0102	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,RPL4->chr15:66790355-66816870:-,ribosomal_protein_L4	QGP1_PANCREAS	0	0	0.0204	FALSE	0	1	0	2	0	FALSE	ACH-000347
QGP1_PANCREAS	PMS2--EIF2AK1	1	1	PMS2	4910	chr7:6042084:-	EIF2AK1	22531	chr7:6094335:-	ONLY_REF_SPLICE	NO	112	268	0.02	0.01	0.0102	0.0102	LOCAL_REARRANGEMENT:-:[13125],PMS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},PMS1_homolog_2,_mismatch_repair_system_component,chr7:6012870-6048756:-,EIF2AK1->chr7:6061881-6098861:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_1	QGP1_PANCREAS	0.01	0.02	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0102	0.0102	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	QGP1_PANCREAS	1	1	0.0204	FALSE	81	155	12	160	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	15	0.5	0.12	0.0102	0.0102	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	QGP1_PANCREAS	0.12	0.5	0.0204	FALSE	0	48	1	163	0	FALSE	ACH-000347
QGP1_PANCREAS	RP11-660L16.2--LATS1	1	1	RP11-660L16.2	1212	chr11:71159931:+	LATS1	14801	chr6:150001593:-	ONLY_REF_SPLICE	YES	31	48	0.06	0.04	0.0102	0.0102	RP11-660L16.2->chr11:71159720-71163203:+,LATS1->Oncogene{Bushman},chr6:149979289-150039392:-,large_tumor_suppressor_kinase_1	QGP1_PANCREAS	0.04	0.06	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	SLC25A36--TP53BP1	1	1	SLC25A36	5624	chr3:140682069:+	TP53BP1	30855	chr15:43762264:-	ONLY_REF_SPLICE	NO	132	194	0.01	0.01	0.0102	0.0102	SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	QGP1_PANCREAS	0.01	0.01	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	SLC6A6--RP11-708B6.2	1	1	SLC6A6	3615	chr3:14457961:+	RP11-708B6.2	31901	chr11:109235795:-	ONLY_REF_SPLICE	YES	34	0	0.06	1	0.0102	0.0102	SLC6A6->chr3:14444076-14530857:+,solute_carrier_family_6_member_6,RP11-708B6.2->chr11:109225812-109454633:-	QGP1_PANCREAS	0.06	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	SRP14-AS1--HERC4	1	1	SRP14-AS1	2247	chr15:40338270:+	HERC4	44954	chr10:69699411:-	ONLY_REF_SPLICE	YES	18	86	0.1	0.02	0.0102	0.0102	SRP14-AS1->SRP14_antisense_RNA1_(head_to_head),chr15:40331512-40359491:+,HERC4->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_4,chr10:69681665-69835105:-	QGP1_PANCREAS	0.02	0.1	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000347
QGP1_PANCREAS	STXBP5--RP11-307P5.1	1	1	STXBP5	25692	chr6:147674509:+	RP11-307P5.1	42774	chr6:148274466:+	ONLY_REF_SPLICE	YES	43	0	0.04	1	0.0102	0.0102	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,RP11-307P5.1->chr6:147981839-148275073:+	QGP1_PANCREAS	0.04	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000347
QGP1_PANCREAS	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	4067	123	0	0.02	0.0102	0.0102	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	QGP1_PANCREAS	0	0.02	0.0204	FALSE	6	50	7	115	0	FALSE	ACH-000347
LOVO_LARGE_INTESTINE	EIF3J--TRIM69	252	81	EIF3J	1371	chr15:44829625:+	TRIM69	13936	chr15:45023561:+	ONLY_REF_SPLICE	YES	168	24	0.66	0.93	2.3883	0.7677	EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J,TRIM69->chr15:45021186-45060027:+,tripartite_motif_containing_69	LOVO_LARGE_INTESTINE	0.66	0.93	3.156	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	TIMM23B--LINC00843	101	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9572	0.2464	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LOVO_LARGE_INTESTINE	1	1	1.2036	TRUE	508	994	45	981	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	KANSL1--ARL17B	60	33	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	33	60	0.74	0.61	0.5686	0.3128	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	LOVO_LARGE_INTESTINE	0.61	0.74	0.8814	TRUE	181	1564	124	196	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	EIF3J--TRIM69	60	19	EIF3J	1371	chr15:44829625:+	TRIM69	20897	chr15:45047098:+	ONLY_REF_SPLICE	YES	168	7	0.32	0.92	0.5686	0.1801	EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J,TRIM69->chr15:45021186-45060027:+,tripartite_motif_containing_69	LOVO_LARGE_INTESTINE	0.32	0.92	0.7487	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	TIMM23--RP11-464F9.1	63	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	185	7	0.26	0.9	0.5971	0.019	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LOVO_LARGE_INTESTINE	0.26	0.9	0.6161	TRUE	519	3926	326	965	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND6--MT-ND5	54	2	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1588	1	0.03	0.5118	0.019	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	LOVO_LARGE_INTESTINE	0.03	1	0.5308	FALSE	101	855	57	72	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	EEF2--EIF5A	49	0	EEF2	9074	chr19:3977238:-	EIF5A	17304	chr17:7214384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4644	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A	LOVO_LARGE_INTESTINE	1	1	0.4644	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	MT-TA--MT-TC	39	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3696	0.0284	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LOVO_LARGE_INTESTINE	1	1	0.398	FALSE	462	80	0	856	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	ZNF654--HMGB2	29	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2748	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LOVO_LARGE_INTESTINE	1	1	0.2748	TRUE	0	0	0	518	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND6--MT-TE	28	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2654	0.019	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LOVO_LARGE_INTESTINE	1	1	0.2844	FALSE	499	1288	110	792	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND5--MT-ATP8	25	8	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2612	7	0.01	0.82	0.2369	0.0758	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0.01	0.82	0.3127	FALSE	43	37	8	105	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND5--MT-ATP8	18	13	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.1706	0.1232	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0.89	1	0.2938	FALSE	43	37	8	105	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	NPM1P24--SET	21	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.199	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LOVO_LARGE_INTESTINE	1	1	0.199	TRUE	0	0	0	434	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND6--MT-TE	13	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1232	0.0948	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LOVO_LARGE_INTESTINE	0.96	1	0.218	FALSE	499	1288	110	792	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	C15orf57--CBX3	12	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	54	42	0.28	0.33	0.1137	0.0853	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LOVO_LARGE_INTESTINE	0.28	0.33	0.199	TRUE	267	562	48	632	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-ATP8	13	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1232	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	1	1	0.1232	FALSE	231	205	14	283	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	NIPA2--POLA1	13	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1232	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	LOVO_LARGE_INTESTINE	1	1	0.1232	TRUE	46	1352	75	139	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND5--MT-ATP8	11	6	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4	496	0.81	0.03	0.1043	0.0569	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0.03	0.81	0.1612	FALSE	43	37	8	105	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND6--MT-TE	12	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1137	0.019	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LOVO_LARGE_INTESTINE	1	1	0.1327	FALSE	499	1288	110	792	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	EIF3J--TRIM69	11	3	EIF3J	1371	chr15:44829625:+	TRIM69	26870	chr15:45059429:+	ONLY_REF_SPLICE	YES	168	37	0.08	0.27	0.1043	0.0284	EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J,TRIM69->chr15:45021186-45060027:+,tripartite_motif_containing_69	LOVO_LARGE_INTESTINE	0.08	0.27	0.1327	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND5--MT-ATP8	10	7	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4198	62	0	0.22	0.0948	0.0663	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0	0.22	0.1611	FALSE	43	37	8	105	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ATP6--MT-CO1	11	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	8834	19370	0	0	0.1043	0.0095	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LOVO_LARGE_INTESTINE	0	0	0.1138	FALSE	183	104	9	328	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	BMP4--RPS19	10	1	BMP4	8572	chr14:54416954:-	RPS19	12410	chr19:42364325:+	INCL_NON_REF_SPLICE	YES	1227	4	0.01	0.73	0.0948	0.0095	BMP4->bone_morphogenetic_protein_4,chr14:54416454-54425479:-,RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19	LOVO_LARGE_INTESTINE	0.01	0.73	0.1043	TRUE	0	0	0	5	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ATP6--MT-CO1	7	8	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3115	20058	0	0	0.0663	0.0758	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LOVO_LARGE_INTESTINE	0	0	0.1421	FALSE	183	104	9	328	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9750	6	0	0.67	0.0758	0.0379	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0	0.67	0.1137	FALSE	231	217	16	283	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND6--MT-TE	5	15	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0474	0.1422	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LOVO_LARGE_INTESTINE	0.95	1	0.1896	FALSE	499	1288	110	792	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ATP6--MT-CO1	8	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10951	19668	0	0	0.0758	0.019	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LOVO_LARGE_INTESTINE	0	0	0.0948	FALSE	183	104	9	328	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND5--MT-ATP8	4	15	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0.1422	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	1	1	0.1801	FALSE	43	37	8	105	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND6--MT-TE	4	15	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0379	0.1422	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LOVO_LARGE_INTESTINE	0.9	1	0.1801	FALSE	499	1288	110	792	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND6--MT-ND5	7	2	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	2634	1	0	0.0663	0.019	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	LOVO_LARGE_INTESTINE	0	1	0.0853	FALSE	101	855	57	72	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	C15orf57--CBX3	6	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	51	44	0.18	0.2	0.0569	0.0474	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LOVO_LARGE_INTESTINE	0.18	0.2	0.1043	TRUE	267	562	48	632	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ATP6--MT-CO1	7	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9032	19779	0	0	0.0663	0.0095	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LOVO_LARGE_INTESTINE	0	0	0.0758	FALSE	183	104	9	328	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9160	61	0	0.15	0.0569	0.0474	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0	0.15	0.1043	FALSE	231	217	16	283	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	17	MT-ND5	2795	chrM:14131:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0.1611	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	1	1	0.1895	FALSE	43	37	8	105	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND5--MT-ATP8	4	12	MT-ND5	2675	chrM:14011:+	MT-ATP8	5892	chrM:8445:+	INCL_NON_REF_SPLICE	YES	927	0	0.02	1	0.0379	0.1137	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0.02	1	0.1516	FALSE	43	37	8	105	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND6--MT-TE	5	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0.0758	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LOVO_LARGE_INTESTINE	1	1	0.1232	FALSE	499	1288	110	792	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	EIF3J--TRIM69	2	19	EIF3J	1371	chr15:44829625:+	TRIM69	17687	chr15:45028681:+	ONLY_REF_SPLICE	YES	168	4	0.11	0.84	0.019	0.1801	EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J,TRIM69->chr15:45021186-45060027:+,tripartite_motif_containing_69	LOVO_LARGE_INTESTINE	0.11	0.84	0.1991	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND5--MT-ATP8	4	11	MT-ND5	2116	chrM:13452:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	4089	0	0	1	0.0379	0.1043	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0	1	0.1422	FALSE	43	37	8	105	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	15	MT-ND5	2780	chrM:14116:+	MT-ATP8	5883	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0.1422	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	1	1	0.1706	FALSE	43	37	8	105	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0569	0.0284	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LOVO_LARGE_INTESTINE	1	1	0.0853	FALSE	462	80	0	856	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	14	MT-ND5	2644	chrM:13980:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	1594	0	0.01	1	0.0284	0.1327	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0.01	1	0.1611	FALSE	43	37	8	105	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND6--MT-ND5	6	2	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	1558	1	0.01	0.0569	0.019	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	LOVO_LARGE_INTESTINE	0.01	1	0.0759	FALSE	101	855	57	72	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	EEF2--RPS28	6	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	3799	0	0	1	0.0569	0.0095	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	LOVO_LARGE_INTESTINE	0	1	0.0664	FALSE	0	0	0	100	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	7	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	9275	0	0	1	0.0379	0.0663	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0	1	0.1042	FALSE	231	217	16	283	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	11	MT-ND5	2290	chrM:13626:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2160	0	0.01	1	0.0284	0.1043	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0.01	1	0.1327	FALSE	43	37	8	105	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	11	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	2016	0	0.01	1	0.0284	0.1043	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0.01	1	0.1327	FALSE	43	37	8	105	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND6--MT-TE	3	11	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0284	0.1043	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LOVO_LARGE_INTESTINE	0.93	1	0.1327	FALSE	499	1288	110	792	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ATP6--MT-CO1	5	2	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	9839	0	0	1	0.0474	0.019	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LOVO_LARGE_INTESTINE	0	1	0.0664	FALSE	182	97	9	327	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	10	MT-ND5	2178	chrM:13514:+	MT-ATP8	5875	chrM:8428:+	INCL_NON_REF_SPLICE	YES	2929	0	0	1	0.0284	0.0948	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0	1	0.1232	FALSE	43	37	8	105	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	RP11-123O10.4--GRIP1	5	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0474	0.019	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LOVO_LARGE_INTESTINE	1	1	0.0664	FALSE	416	2512	207	587	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	9	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	9489	0	0	1	0.0284	0.0853	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0	1	0.1137	FALSE	231	217	16	283	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	5	MT-ND4	1756	chrM:11515:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	9310	0	0	1	0.0379	0.0474	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0	1	0.0853	FALSE	231	217	16	283	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	1	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	NO	8491	0	0	1	0.0474	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0	1	0.0569	FALSE	230	197	14	283	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	9	MT-ND5	2764	chrM:14100:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	62	1	0.16	0.0284	0.0853	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0.16	1	0.1137	FALSE	43	37	8	105	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	JSRP1--RPS28	4	4	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0.0379	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	LOVO_LARGE_INTESTINE	1	1	0.0758	TRUE	0	1	0	84	1	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	JSRP1--RPS28	4	4	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0.0379	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	LOVO_LARGE_INTESTINE	1	1	0.0758	TRUE	0	1	0	84	1	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	1	1	0.0474	FALSE	230	193	14	283	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	8	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	9722	0	0	1	0.0284	0.0758	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0	1	0.1042	FALSE	231	217	16	283	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LOVO_LARGE_INTESTINE	1	1	0.0474	FALSE	499	1288	110	792	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	RPS9--RPL3	5	0	RPS9	3304	chr19:54710180:+	RPL3	15341	chr22:39712801:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	RPS9->chr19:54704610-54752862:+,ribosomal_protein_S9,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3	LOVO_LARGE_INTESTINE	1	1	0.0474	TRUE	0	0	0	2	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	7	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	9514	0	0	1	0.0284	0.0663	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0	1	0.0947	FALSE	231	217	16	283	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	3	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	10673	0	0	1	0.0379	0.0284	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0	1	0.0663	FALSE	231	217	16	283	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	RP11-680G10.1--GSE1	4	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	8	1	0.47	0.0379	0.0284	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LOVO_LARGE_INTESTINE	0.47	1	0.0663	TRUE	458	1351	185	561	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	RP11-680G10.1--GSE1	4	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	49	1	0.12	0.0379	0.0284	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LOVO_LARGE_INTESTINE	0.12	1	0.0663	TRUE	465	1949	224	605	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-CO2	3	6	MT-ND4	1984	chrM:11743:+	MT-CO2	5484	chrM:7691:+	INCL_NON_REF_SPLICE	YES	9598	38	0	0.19	0.0284	0.0569	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	LOVO_LARGE_INTESTINE	0	0.19	0.0853	FALSE	5	1	0	19	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	IMMP2L--AC003088.1	4	1	IMMP2L	12890	chr7:110526649:-	AC003088.1	19914	chr7:110165618:-	ONLY_REF_SPLICE	YES	10	0	0.33	1	0.0379	0.0095	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	LOVO_LARGE_INTESTINE	0.33	1	0.0474	TRUE	1	1	0	2	1	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	8905	17578	0	0	0.0379	0.0095	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LOVO_LARGE_INTESTINE	0	0	0.0474	FALSE	183	104	9	328	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	1	MT-ND4	1503	chrM:11262:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	10774	0	0	1	0.0379	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0	1	0.0474	FALSE	231	217	16	283	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0.0095	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LOVO_LARGE_INTESTINE	1	1	0.0474	FALSE	462	80	0	856	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-CO2	4	0	MT-ND4	1212	chrM:10971:+	MT-CO2	5734	chrM:7941:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	LOVO_LARGE_INTESTINE	1	1	0.0379	FALSE	5	1	0	19	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND6--MT-ND5	4	0	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	LOVO_LARGE_INTESTINE	1	1	0.0379	FALSE	101	855	57	72	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LOVO_LARGE_INTESTINE	1	1	0.0379	FALSE	499	1288	110	792	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	10951	0	0	1	0.0284	0.0284	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LOVO_LARGE_INTESTINE	0	1	0.0568	FALSE	182	97	9	327	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	3	MT-ATP6	1153	chrM:8679:+	MT-CO1	4732	chrM:5954:+	INCL_NON_REF_SPLICE	YES	10503	1	0	0.86	0.0284	0.0284	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LOVO_LARGE_INTESTINE	0	0.86	0.0568	FALSE	182	97	9	327	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4006	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0.0284	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LOVO_LARGE_INTESTINE	1	1	0.0568	FALSE	462	80	0	856	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5314	chrM:6536:+	INCL_NON_REF_SPLICE	YES	10951	18840	0	0	0.0284	0.019	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LOVO_LARGE_INTESTINE	0	0	0.0474	FALSE	183	104	9	328	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-CO2	3	2	MT-ND4	1518	chrM:11277:+	MT-CO2	5529	chrM:7736:+	INCL_NON_REF_SPLICE	NO	11514	7290	0	0	0.0284	0.019	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	LOVO_LARGE_INTESTINE	0	0	0.0474	FALSE	5	1	0	19	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND6--MT-ND5	3	2	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	NO	5	1543	0.5	0	0.0284	0.019	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	LOVO_LARGE_INTESTINE	0	0.5	0.0474	FALSE	101	855	57	72	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	NRIP1--AF127936.7	3	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0284	0.019	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LOVO_LARGE_INTESTINE	0.56	1	0.0474	FALSE	292	1546	117	613	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	PKM--PPIA	3	2	PKM	16753	chr15:72494877:-	PPIA	23268	chr7:44836286:+	INCL_NON_REF_SPLICE	YES	2998	0	0	1	0.0284	0.019	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	LOVO_LARGE_INTESTINE	0	1	0.0474	FALSE	0	0	0	18	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	EEF2--EEF1A1P5	3	1	EEF2	4125	chr19:3982343:-	EEF1A1P5	13279	chr9:135894836:+	INCL_NON_REF_SPLICE	NO	3456	0	0	1	0.0284	0.0095	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,EEF1A1P5->chr9:135894816-135896553:+,eukaryotic_translation_elongation_factor_1_alpha_1_pseudogene_5	LOVO_LARGE_INTESTINE	0	1	0.0379	FALSE	0	0	0	1	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	FAM129B--METRNL	3	1	FAM129B	8172	chr9:130285958:-	METRNL	23759	chr17:81050912:+	ONLY_REF_SPLICE	YES	306	136	0.01	0.03	0.0284	0.0095	{Klijn_CCL:Stomach=1},FAM129B->chr9:130267618-130341268:-,family_with_sequence_similarity_129_member_B,METRNL->chr17:81037567-81052864:+,meteorin,_glial_cell_differentiation_regulator-like	LOVO_LARGE_INTESTINE	0.01	0.03	0.0379	FALSE	0	0	0	2	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1113	chrM:8639:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	8624	17929	0	0	0.0284	0.0095	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LOVO_LARGE_INTESTINE	0	0	0.0379	FALSE	183	104	9	328	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	NO	8625	19668	0	0	0.0284	0.0095	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LOVO_LARGE_INTESTINE	0	0	0.0379	FALSE	183	104	9	328	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	10361	18267	0	0	0.0284	0.0095	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LOVO_LARGE_INTESTINE	0	0	0.0379	FALSE	183	104	9	328	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	11382	1463	0	0	0.0284	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	0	0	0.0379	FALSE	231	205	14	283	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	AC104389.28--HBE1	3	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	LOVO_LARGE_INTESTINE	1	1	0.0284	TRUE	0	16	0	53	13	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	EEF2--EEF1A1P5	3	0	EEF2	3540	chr19:3982928:-	EEF1A1P5	14649	chr9:135896206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,EEF1A1P5->chr9:135894816-135896553:+,eukaryotic_translation_elongation_factor_1_alpha_1_pseudogene_5	LOVO_LARGE_INTESTINE	1	1	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	FTH1--ACTB	3	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	LOVO_LARGE_INTESTINE	1	1	0.0284	TRUE	1	0	0	97	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LOVO_LARGE_INTESTINE	1	1	0.0284	FALSE	183	104	9	328	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LOVO_LARGE_INTESTINE	1	1	0.0284	FALSE	231	204	14	283	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-CO2	3	0	MT-ND4	1275	chrM:11034:+	MT-CO2	5522	chrM:7729:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	LOVO_LARGE_INTESTINE	1	1	0.0284	FALSE	5	1	0	19	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-CO2	3	0	MT-ND4	1222	chrM:10981:+	MT-CO2	5514	chrM:7721:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	LOVO_LARGE_INTESTINE	1	1	0.0284	FALSE	5	1	0	19	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND4--MT-CO2	3	0	MT-ND4	1279	chrM:11038:+	MT-CO2	5527	chrM:7734:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	LOVO_LARGE_INTESTINE	1	1	0.0284	FALSE	5	1	0	19	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LOVO_LARGE_INTESTINE	1	1	0.0284	FALSE	499	1288	110	792	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	3	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	LOVO_LARGE_INTESTINE	1	1	0.0284	FALSE	81	155	12	160	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	SAMD5--SASH1	3	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	LOVO_LARGE_INTESTINE	1	1	0.0284	TRUE	53	396	64	110	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	FNBP4--NUP160	2	1	FNBP4	2468	chr11:47786822:-	NUP160	29772	chr11:47859175:-	ONLY_REF_SPLICE	NO	89	66	0.03	0.04	0.019	0.0095	LOCAL_REARRANGEMENT:-:[10644],FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,NUP160->chr11:47799639-47870107:-,nucleoporin_160kDa	LOVO_LARGE_INTESTINE	0.03	0.04	0.0285	TRUE	0	0	0	6	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	NANS--ANP32B	2	1	NANS	2418	chr9:100823279:+	ANP32B	20683	chr9:100773553:+	ONLY_REF_SPLICE	YES	344	1197	0.01	0	0.019	0.0095	LOCAL_REARRANGEMENT:+:[40796],NANS->N-acetylneuraminate_synthase,chr9:100819021-100845357:+,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	LOVO_LARGE_INTESTINE	0	0.01	0.0285	FALSE	0	0	0	2	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	ABCC3--AC017060.1	2	0	ABCC3	1205	chr17:48712342:+	AC017060.1	34577	chr7:17523158:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+,AC017060.1->chr7:17503069-17598533:-	LOVO_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	AC104389.28--HBE1	2	0	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	LOVO_LARGE_INTESTINE	1	1	0.019	TRUE	0	11	0	26	8	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	CRIM1--FEZ2	2	0	CRIM1	18863	chr2:36749456:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	LOVO_LARGE_INTESTINE	1	1	0.019	TRUE	2	2	0	15	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	DOCK5--SH3KBP1	2	0	DOCK5	6939	chr8:25136181:+	SH3KBP1	85785	chrX:19626163:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5,SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-	LOVO_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	FBXW11--UBTD2	2	0	FBXW11	1416	chr5:171433462:-	UBTD2	28205	chr5:171661362:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx_v2:{count=3;pct=0.03%;dist=Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Cells_-_Transformed_fibroblasts=1},FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,UBTD2->chr5:171636644-171711075:-,ubiquitin_domain_containing_2	LOVO_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	2	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	PTBP3--XPO6	2	0	PTBP3	3994	chr9:115060121:-	XPO6	31789	chr16:28181230:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,XPO6->chr16:28109300-28223241:-,exportin_6	LOVO_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	SETD3--CCNK	2	0	SETD3	1152	chr14:99947065:-	CCNK	24374	chr14:99958963:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:-:+:[290],SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,CCNK->chr14:99947506-100001381:+,cyclin_K	LOVO_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	TIMM23--RP11-464F9.1	2	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	26959	chr10:75454562:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LOVO_LARGE_INTESTINE	1	1	0.019	TRUE	1	3	0	8	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	31200	chr10:75436528:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LOVO_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	1	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	ZBTB38--RNF13	2	0	ZBTB38	1244	chr3:141043298:+	RNF13	41179	chr3:149613260:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38,RNF13->chr3:149530495-149679926:+,ring_finger_protein_13	LOVO_LARGE_INTESTINE	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000950
LOVO_LARGE_INTESTINE	NRIP1--AF127936.7	1	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0095	0.019	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LOVO_LARGE_INTESTINE	0.27	1	0.0285	FALSE	125	705	46	456	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	CPT1A--AP000867.1	1	1	CPT1A	9234	chr11:68571468:-	AP000867.1	38418	chr11:71293203:-	ONLY_REF_SPLICE	YES	150	0	0.01	1	0.0095	0.0095	CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-,AP000867.1->chr11:71292956-71318487:-	LOVO_LARGE_INTESTINE	0.01	1	0.019	FALSE	0	0	0	2	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	FAF1--OSBPL9	1	1	FAF1	1497	chr1:51425439:-	OSBPL9	41670	chr1:52211208:+	ONLY_REF_SPLICE	NO	28	144	0.07	0.01	0.0095	0.0095	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9	LOVO_LARGE_INTESTINE	0.01	0.07	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	FGFR2--COL14A1	1	1	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	12	0	0.14	1	0.0095	0.0095	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	LOVO_LARGE_INTESTINE	0.14	1	0.019	TRUE	0	0	0	32	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	PROSC--WHSC1L1	1	1	PROSC	2996	chr8:37623873:+	WHSC1L1	28969	chr8:38173560:-	ONLY_REF_SPLICE	YES	181	21	0.01	0.09	0.0095	0.0095	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},{Klijn_CCL:Lymphoid=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-	LOVO_LARGE_INTESTINE	0.01	0.09	0.019	FALSE	0	2	0	1	0	FALSE	ACH-000950
LOVO_LARGE_INTESTINE	TMED2--MANF	1	1	TMED2	1286	chr12:124069363:+	MANF	13908	chr3:51425168:+	ONLY_REF_SPLICE	YES	521	345	0	0.01	0.0095	0.0095	TMED2->chr12:124069078-124083116:+,transmembrane_p24_trafficking_protein_2,MANF->Oncogene{Bushman},chr3:51422478-51426828:+,mesencephalic_astrocyte_derived_neurotrophic_factor	LOVO_LARGE_INTESTINE	0	0.01	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000950
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	68	35	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	32	40	0.76	0.72	1.2645	0.6508	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	0.76	1.9153	TRUE	181	1564	124	196	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	56	10	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0413	0.186	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2273	TRUE	508	994	45	981	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	35	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6508	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6508	TRUE	519	3926	326	965	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ETV6--RP1-231P7P.1	29	4	ETV6	1307	chr12:11803094:+	RP1-231P7P.1	23341	chr22:27959883:-	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.5393	0.0744	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,RP1-231P7P.1->chr22:27959800-27969534:-	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.6137	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	28	1	MT-ND6	1051	chrM:14623:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5207	0.0186	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5393	FALSE	499	1288	110	792	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	27	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5021	0.0186	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5207	FALSE	462	80	0	856	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DPH7--PTP4A3	19	0	DPH7	1297	chr9:140473091:-	PTP4A3	14726	chr8:142431487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3533	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:10=pct:2.7],Heart=[count:7=pct:2.8],Pituitary=[count:4=pct:7.7],Nerve=[count:2=pct:1.2],Esophagus=[count:2=pct:0.5],Colon=[count:2=pct:1.0],Lung=[count:2=pct:1.2],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Kidney=[count:1=pct:7.1],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},GTEx_v2:{count=46;pct=0.53%;dist=Artery_-_Tibial=9,Heart_-_Atrial_Appendage=9,Pituitary=6,Cells_-_EBV-transformed_lymphocytes=5,Artery_-_Aorta=3,Lung=2,Artery_-_Coronary=2,Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hypothalamus=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1,Testis=1},DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7,PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3533	TRUE	29	213	5	17	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OR51S1--TP53I11	19	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3533	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3533	TRUE	402	216	10	229	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.2975	0.0372	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.3347	FALSE	499	1288	110	792	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	11	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2045	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2045	FALSE	292	1546	117	613	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-634B7.4--TRIM58	7	9	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	8	1	0.67	0.1302	0.1674	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.2976	TRUE	158	633	76	73	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	5	3	AC131097.3	2273	chr2:242824786:+	AC093642.5	11670	chr2:243037038:+	ONLY_REF_SPLICE	YES	8	6	0.5	0.57	0.093	0.0558	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.57	0.1488	FALSE	3	20	2	16	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	3	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.093	0.0558	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	0.1488	FALSE	499	1288	110	792	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.093	0.0558	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1488	FALSE	462	80	0	856	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	3	10	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	2690	1	0	0.0558	0.186	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2418	FALSE	26	124	4	93	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	4	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	174	0	0.05	1	0.0744	0.1116	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.186	FALSE	164	806	69	479	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	3	3	AC131097.3	2273	chr2:242824786:+	AC093642.5	12811	chr2:243056790:+	ONLY_REF_SPLICE	YES	8	10	0.43	0.38	0.0558	0.0558	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.43	0.1116	FALSE	2	37	1	16	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	3	MT-ND6	1337	chrM:14337:-	MT-TE	4550	chrM:14718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0.0558	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1116	FALSE	499	1288	110	792	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-495P10.2--RP11-403I13.4	3	3	RP11-495P10.2	1210	chr1:147931724:-	RP11-403I13.4	10510	chr1:149239868:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0558	0.0558	GTEx_FI:{Brain=[count:4=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Breast=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Fallopian_Tube=[count:1=pct:16.7]},RP11-495P10.2->chr1:147835127-147931933:-,RP11-403I13.4->chr1:149239531-149265510:+	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.1116	TRUE	8	0	0	5	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	FALSE	462	80	0	856	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0558	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	FALSE	25	145	6	90	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-634B7.4--TRIM58	1	6	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	10447	chr1:248028007:+	ONLY_REF_SPLICE	YES	0	12	1	0.37	0.0186	0.1116	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	1	0.1302	TRUE	0	5	0	2	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf48--SDCCAG8	2	0	C19orf48	3713	chr19:51305474:-	SDCCAG8	29176	chr1:243542023:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	C19orf48->chr19:51300961-51308186:-,chromosome_19_open_reading_frame_48,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2017D11.1--TMEM131	2	0	CTD-2017D11.1	3885	chr19:24232350:+	TMEM131	51012	chr2:98373846:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	CTD-2017D11.1->chr19:24216247-24249711:+,TMEM131->chr2:98372799-98612388:-,transmembrane_protein_131	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EMC3--UBE2G2	2	0	EMC3	10089	chr3:10011403:-	UBE2G2	26564	chr21:46193602:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	EMC3->ER_membrane_protein_complex_subunit_3,chr3:10004221-10052800:-,UBE2G2->chr21:46188955-46221934:-,ubiquitin_conjugating_enzyme_E2_G2	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERICH1--FBXO25	2	0	ERICH1	2423	chr8:681140:-	FBXO25	34253	chr8:399990:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	ERICH1->Oncogene{Bushman},chr8:564746-688106:-,glutamate_rich_1,FBXO25->F-box_protein_25,chr8:356428-421225:+	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYST--MIER1	2	0	LYST	7339	chr1:235976271:-	MIER1	80438	chr1:67411833:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator,MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGAT4B--AADAT	2	0	MGAT4B	6005	chr5:179228784:-	AADAT	15094	chr4:171010887:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	MGAT4B->chr5:179224597-179233952:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_B,AADAT->aminoadipate_aminotransferase,chr4:170981373-171012850:-	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF785--ATXN2	2	0	ZNF785	3583	chr16:30593832:-	ATXN2	34914	chr12:111908546:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	ZNF785->chr16:30585061-30597092:-,zinc_finger_protein_785,ATXN2->ataxin_2,chr12:111890018-112037480:-	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AXL--TGFB1	1	1	AXL	3854	chr19:41727961:+	TGFB1	25383	chr19:41854360:-	ONLY_REF_SPLICE	YES	0	346	1	0.01	0.0186	0.0186	LOCAL_INVERSION:+:-:[39821],AXL->AXL_receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:41725108-41767671:+,TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0372	FALSE	0	0	0	1	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNTNAP2--COA1	1	1	CNTNAP2	18196	chr7:147675081:+	COA1	57376	chr7:43673007:-	ONLY_REF_SPLICE	YES	15	6	0.12	0.25	0.0186	0.0186	CNTNAP2->chr7:145813453-148118090:+,contactin_associated_protein-like_2,COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.25	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNTNAP2--COA1	1	1	CNTNAP2	18196	chr7:147675081:+	COA1	60779	chr7:43649094:-	ONLY_REF_SPLICE	YES	15	7	0.12	0.22	0.0186	0.0186	CNTNAP2->chr7:145813453-148118090:+,contactin_associated_protein-like_2,COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.22	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNTNAP2--COA1	1	1	CNTNAP2	18196	chr7:147675081:+	COA1	60633	chr7:43649240:-	ONLY_REF_SPLICE	YES	15	3	0.12	0.4	0.0186	0.0186	CNTNAP2->chr7:145813453-148118090:+,contactin_associated_protein-like_2,COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.4	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0196--TMEM65	1	1	KIAA0196	21553	chr8:126056778:-	TMEM65	36359	chr8:125335616:-	ONLY_REF_SPLICE	YES	40	82	0.05	0.02	0.0186	0.0186	KIAA0196->KIAA0196,chr8:126036502-126104082:-,TMEM65->chr8:125324231-125384933:-,transmembrane_protein_65	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.0372	TRUE	0	0	0	1	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCGF3--CTBP1	1	1	PCGF3	1223	chr4:699759:+	CTBP1	32520	chr4:1222131:-	ONLY_REF_SPLICE	YES	32	226	0.06	0.01	0.0186	0.0186	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PCGF3->chr4:699537-764428:+,polycomb_group_ring_finger_3,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.0372	FALSE	0	0	0	1	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRRC2B--ARRDC1	1	1	PRRC2B	31929	chr9:134367647:+	ARRDC1	44097	chr9:140507348:+	ONLY_REF_SPLICE	YES	231	171	0.01	0.01	0.0186	0.0186	PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,ARRDC1->arrestin_domain_containing_1,chr9:140500106-140509812:+	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0372	FALSE	0	0	0	1	0	FALSE	ACH-000084
MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SETD3--VRK1	1	1	SETD3	1152	chr14:99947065:-	VRK1	23392	chr14:97299804:+	ONLY_REF_SPLICE	YES	26	2	0.07	0.5	0.0186	0.0186	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,VRK1->Oncogene{Bushman},chr14:97263641-97398059:+,vaccinia_related_kinase_1	MUTZ3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.5	0.0372	TRUE	0	0	0	2	0	TRUE	ACH-000084
LN235_CENTRAL_NERVOUS_SYSTEM	ADORA2B--PIGL	42	55	ADORA2B	1667	chr17:15848897:+	PIGL	12895	chr17:16203202:+	ONLY_REF_SPLICE	YES	154	45	0.39	0.68	0.5217	0.6832	ADORA2B->adenosine_A2b_receptor,chr17:15848231-15879060:+,PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L	LN235_CENTRAL_NERVOUS_SYSTEM	0.39	0.68	1.2049	TRUE	0	1	0	2	1	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	44	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.5465	0.3105	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LN235_CENTRAL_NERVOUS_SYSTEM	0.99	1	0.857	TRUE	508	994	45	981	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	39	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4844	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.4844	TRUE	0	0	0	518	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	36	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4472	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.4472	TRUE	7	10	0	216	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	25	30	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	2033	330	0.03	0.14	0.3105	0.3726	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	LN235_CENTRAL_NERVOUS_SYSTEM	0.03	0.14	0.6831	FALSE	76	19	3	26	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	25	16	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	29	50	0.59	0.45	0.3105	0.1987	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	LN235_CENTRAL_NERVOUS_SYSTEM	0.45	0.59	0.5092	TRUE	181	1564	124	196	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	ADORA2B--PIGL	9	66	ADORA2B	1667	chr17:15848897:+	PIGL	11847	chr17:16187335:+	ONLY_REF_SPLICE	YES	154	44	0.33	0.63	0.1118	0.8198	ADORA2B->adenosine_A2b_receptor,chr17:15848231-15879060:+,PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L	LN235_CENTRAL_NERVOUS_SYSTEM	0.33	0.63	0.9316	TRUE	0	0	0	1	0	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	23	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	387	7	0.06	0.79	0.2857	0.0373	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LN235_CENTRAL_NERVOUS_SYSTEM	0.06	0.79	0.323	TRUE	519	3926	326	965	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	17	21	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	210	1	0.15	0.97	0.2112	0.2608	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	LN235_CENTRAL_NERVOUS_SYSTEM	0.15	0.97	0.472	FALSE	21	45	1	60	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	17	10	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	375	1	0.07	0.96	0.2112	0.1242	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	LN235_CENTRAL_NERVOUS_SYSTEM	0.07	0.96	0.3354	FALSE	56	216	12	147	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	9	19	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	80	96	0.26	0.23	0.1118	0.236	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LN235_CENTRAL_NERVOUS_SYSTEM	0.23	0.26	0.3478	TRUE	267	562	48	632	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	8	16	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	3	1	0.89	0.0994	0.1987	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN235_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.2981	FALSE	515	4851	409	746	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	6	18	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	2535	330	0.01	0.07	0.0745	0.2236	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	LN235_CENTRAL_NERVOUS_SYSTEM	0.01	0.07	0.2981	FALSE	38	10	2	29	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	5	19	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0621	0.236	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.2981	FALSE	407	2205	196	549	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	8	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	5	1	0.74	0.0994	0.0745	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN235_CENTRAL_NERVOUS_SYSTEM	0.74	1	0.1739	TRUE	477	1352	189	275	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	8	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0994	0.0248	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN235_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.1242	TRUE	458	1351	185	561	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	5	13	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	78	96	0.19	0.16	0.0621	0.1615	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LN235_CENTRAL_NERVOUS_SYSTEM	0.16	0.19	0.2236	TRUE	267	562	48	632	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	3	16	PRR16	8644	chr5:120022405:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	330	1	0.05	0.95	0.0373	0.1987	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	LN235_CENTRAL_NERVOUS_SYSTEM	0.05	0.95	0.236	FALSE	21	45	1	60	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	RNLS--ATAD1	6	4	RNLS	7473	chr10:90074223:-	ATAD1	18161	chr10:89552512:-	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0745	0.0497	RNLS->chr10:90033621-90344287:-,renalase,_FAD-dependent_amine_oxidase,ATAD1->ATPase_family,_AAA_domain_containing_1,chr10:89511269-89601100:-	LN235_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.1242	TRUE	0	0	0	1	0	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	ADORA2B--PIGL	1	21	ADORA2B	1667	chr17:15848897:+	PIGL	15355	chr17:16216861:+	ONLY_REF_SPLICE	NO	154	33	0.12	0.4	0.0124	0.2608	ADORA2B->adenosine_A2b_receptor,chr17:15848231-15879060:+,PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L	LN235_CENTRAL_NERVOUS_SYSTEM	0.12	0.4	0.2732	TRUE	0	0	0	1	0	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	FN1--MT-ATP8	5	5	FN1	30132	chr2:216251516:-	MT-ATP8	55001	chrM:8431:+	INCL_NON_REF_SPLICE	NO	8636	0	0	1	0.0621	0.0621	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN235_CENTRAL_NERVOUS_SYSTEM	0	1	0.1242	FALSE	0	5	0	4	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	COL1A2--ENO1	5	4	COL1A2	24857	chr7:94052376:+	ENO1	42847	chr1:8927239:-	INCL_NON_REF_SPLICE	YES	12967	9733	0	0	0.0621	0.0497	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	LN235_CENTRAL_NERVOUS_SYSTEM	0	0	0.1118	TRUE	0	0	0	1	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	COL1A2--PTMA	5	4	COL1A2	14602	chr7:94041987:+	PTMA	37657	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	9616	2	0	0.82	0.0621	0.0497	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	LN235_CENTRAL_NERVOUS_SYSTEM	0	0.82	0.1118	TRUE	0	0	0	9	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	5	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0621	TRUE	0	1	0	48	1	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0621	TRUE	0	0	0	518	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	4	1	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	2466	0	0	1	0.0497	0.0124	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	LN235_CENTRAL_NERVOUS_SYSTEM	0	1	0.0621	FALSE	1	0	0	97	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	MRPS6--AP000318.2	3	5	MRPS6	7514	chr21:35497780:+	AP000318.2	13412	chr21:35587801:+	ONLY_REF_SPLICE	YES	999	0	0.01	1	0.0373	0.0621	NEIGHBORS[62022],MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,AP000318.2->chr21:35577356-35697334:+	LN235_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0994	FALSE	0	0	0	2	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	FN1--MT-ATP8	3	4	FN1	30148	chr2:216251500:-	MT-ATP8	55042	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8979	49	0	0.12	0.0373	0.0497	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN235_CENTRAL_NERVOUS_SYSTEM	0	0.12	0.087	FALSE	0	5	0	4	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0497	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0497	FALSE	292	1546	117	613	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1179	chr6:30691476:-	TUBBP2	4914	chr13:41959179:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0497	TRUE	0	1	0	48	1	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1023	chr6:30691632:-	TUBBP2	5128	chr13:41958965:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0497	TRUE	0	1	0	48	1	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	FN1--MT-ATP8	3	1	FN1	8087	chr2:216289946:-	MT-ATP8	55042	chrM:8472:+	INCL_NON_REF_SPLICE	NO	4659	49	0	0.08	0.0373	0.0124	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN235_CENTRAL_NERVOUS_SYSTEM	0	0.08	0.0497	FALSE	0	0	0	3	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	MRPS6--AP000318.2	2	5	MRPS6	7514	chr21:35497780:+	AP000318.2	14453	chr21:35635120:+	ONLY_REF_SPLICE	YES	999	0	0.01	1	0.0248	0.0621	NEIGHBORS[62022],MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,AP000318.2->chr21:35577356-35697334:+	LN235_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0869	FALSE	0	3	0	2	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	3	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.29	1	0.0373	0.0124	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN235_CENTRAL_NERVOUS_SYSTEM	0.29	1	0.0497	FALSE	164	806	69	479	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	22	1	0.15	0.0373	0.0124	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN235_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.0497	TRUE	465	1949	224	605	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	3	1	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	NO	3916	0	0	1	0.0373	0.0124	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN235_CENTRAL_NERVOUS_SYSTEM	0	1	0.0497	FALSE	0	1	0	48	1	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	COL1A2--PRDX1	3	0	COL1A2	12861	chr7:94040246:+	PRDX1	37189	chr1:45987556:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,PRDX1->Oncogene{Bushman},chr1:45976708-45988719:-,peroxiredoxin_1	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	TRUE	0	0	0	2	0	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	3	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	FALSE	125	705	46	456	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	7	1	0.53	0.0124	0.0869	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN235_CENTRAL_NERVOUS_SYSTEM	0.53	1	0.0993	TRUE	160	277	29	98	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	1	5	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	29	35	0.17	0.15	0.0124	0.0621	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	LN235_CENTRAL_NERVOUS_SYSTEM	0.15	0.17	0.0745	TRUE	20	16	0	28	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	5	1	0.55	0.0124	0.0621	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN235_CENTRAL_NERVOUS_SYSTEM	0.55	1	0.0745	TRUE	274	363	69	150	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	AC073610.5--PRKAG1	2	0	AC073610.5	1009	chr12:49333438:-	PRKAG1	9523	chr12:49406893:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	LOCAL_REARRANGEMENT:-:[62611],AC073610.5->chr12:49315767-49333446:-,PRKAG1->chr12:49396057-49412980:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_1	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	C1S--DYRK1A	2	0	C1S	1111	chr12:7096461:+	DYRK1A	26549	chr21:38802571:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	C1S->chr12:7096351-7178336:+,complement_component_1,_s_subcomponent,DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	FAM171A1--GNB1	2	0	FAM171A1	3428	chr10:15317854:-	GNB1	26683	chr1:1724750:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	FAM171A1->chr10:15253642-15413061:-,family_with_sequence_similarity_171_member_A1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	FALSE	25	145	6	90	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	NUCB1--TPI1	2	0	NUCB1	6939	chr19:49416789:+	TPI1	18032	chr12:6979213:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NUCB1->chr19:49403307-49426629:+,nucleobindin_1,TPI1->chr12:6976283-6980112:+,triosephosphate_isomerase_1	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	TAGLN2--PUF60	2	0	TAGLN2	1283	chr1:159895240:-	PUF60	19494	chr8:144900704:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	TAGLN2->chr1:159887897-159895522:-,transgelin_2,PUF60->chr8:144898514-144912029:-,poly(U)_binding_splicing_factor_60KDa	LN235_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	1	3	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	42	50	0.09	0.07	0.0124	0.0373	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	LN235_CENTRAL_NERVOUS_SYSTEM	0.07	0.09	0.0497	TRUE	105	90	7	93	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	MRPS6--AP000318.2	1	2	MRPS6	7514	chr21:35497780:+	AP000318.2	15572	chr21:35665981:+	ONLY_REF_SPLICE	NO	999	1	0	0.75	0.0124	0.0248	NEIGHBORS[62022],MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,AP000318.2->chr21:35577356-35697334:+	LN235_CENTRAL_NERVOUS_SYSTEM	0	0.75	0.0372	FALSE	1	3	0	1	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	MRPS6--AP000318.2	1	2	MRPS6	1522	chr21:35446045:+	AP000318.2	15572	chr21:35665981:+	ONLY_REF_SPLICE	YES	1170	1	0	0.75	0.0124	0.0248	NEIGHBORS[62022],MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,AP000318.2->chr21:35577356-35697334:+	LN235_CENTRAL_NERVOUS_SYSTEM	0	0.75	0.0372	FALSE	0	3	0	1	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	DHX29--MAP4K4	1	1	DHX29	1336	chr5:54603215:-	MAP4K4	60500	chr2:102493465:+	ONLY_REF_SPLICE	YES	80	242	0.02	0.01	0.0124	0.0124	DHX29->DEAH-box_helicase_29,chr5:54552073-54603550:-,MAP4K4->chr2:102313312-102511149:+,mitogen-activated_protein_kinase_kinase_kinase_kinase_4	LN235_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	PIGK--ZZZ3	1	1	PIGK	9202	chr1:77620134:-	ZZZ3	27682	chr1:78050340:-	ONLY_REF_SPLICE	NO	416	75	0	0.03	0.0124	0.0124	PIGK->chr1:77554675-77685115:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_K,ZZZ3->chr1:78028101-78149104:-,zinc_finger_ZZ-type_containing_3	LN235_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0248	FALSE	0	0	0	2	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	83	0.5	0.02	0.0124	0.0124	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LN235_CENTRAL_NERVOUS_SYSTEM	0.02	0.5	0.0248	FALSE	16	356	14	466	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	1	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0124	0.0124	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	LN235_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.0248	TRUE	6	15	3	35	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	RP11-349A22.5--PSMA3	1	1	RP11-349A22.5	10690	chr14:58740697:-	PSMA3	26287	chr14:58730423:+	ONLY_REF_SPLICE	YES	41	603	0.05	0	0.0124	0.0124	NEIGHBORS_OVERLAP:-:+:[6647],RP11-349A22.5->chr14:58732083-58764852:-,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	LN235_CENTRAL_NERVOUS_SYSTEM	0	0.05	0.0248	FALSE	1	2	0	1	0	FALSE	ACH-000591
LN235_CENTRAL_NERVOUS_SYSTEM	SPTBN1--RTN4	1	1	SPTBN1	4816	chr2:54753703:+	RTN4	65986	chr2:55214834:-	ONLY_REF_SPLICE	YES	110	185	0.02	0.01	0.0124	0.0124	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Heart=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},GTEx_v2:{count=10;pct=0.12%;dist=Breast_-_Mammary_Tissue=2,Adipose_-_Subcutaneous=2,Lung=2,Brain_-_Putamen_(basal_ganglia)=1,Nerve_-_Tibial=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Frontal_Cortex_(BA9)=1},SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	LN235_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0248	FALSE	5	1	1	2	0	FALSE	ACH-000591
SNU283_LARGE_INTESTINE	MT-TA--MT-TN	153	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.7747	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU283_LARGE_INTESTINE	1	1	1.7747	FALSE	369	2501	205	193	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND5--MT-CO2	150	7	MT-ND5	2667	chrM:14003:+	MT-CO2	5947	chrM:7720:+	INCL_NON_REF_SPLICE	YES	1271	6552	0.11	0.02	1.7399	0.0812	LOCAL_REARRANGEMENT:+:[4068],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU283_LARGE_INTESTINE	0.02	0.11	1.8211	FALSE	7	5	0	9	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	TIMM23B--LINC00843	104	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2063	0.3132	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU283_LARGE_INTESTINE	1	1	1.5195	TRUE	508	994	45	981	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	RELA--EHBP1L1	89	6	RELA	1269	chr11:65430297:-	EHBP1L1	14395	chr11:65346549:+	ONLY_REF_SPLICE	YES	13	27	0.88	0.78	1.0323	0.0696	LOCAL_INVERSION:-:+:[60946],RELA->Oncogene{Bushman},RELA_proto-oncogene,_NF-kB_subunit,chr11:65421067-65430565:-,EHBP1L1->EH_domain_binding_protein_1_like_1,chr11:65343509-65360121:+	SNU283_LARGE_INTESTINE	0.78	0.88	1.1019	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	MT-TA--MT-TC	56	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6496	0.0928	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU283_LARGE_INTESTINE	1	1	0.7424	FALSE	462	80	0	856	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	OR51S1--TP53I11	57	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6612	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU283_LARGE_INTESTINE	1	1	0.6612	TRUE	402	216	10	229	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	TIMM23--RP11-464F9.1	49	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	276	5	0.16	0.91	0.5684	0.0232	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU283_LARGE_INTESTINE	0.16	0.91	0.5916	TRUE	519	3926	326	965	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	DIS3L2--ALPPL2	33	2	DIS3L2	1521	chr2:232826475:+	ALPPL2	39005	chr2:233271535:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.3828	0.0232	NEIGHBORS[62493],DIS3L2->DIS3_like_3'-5'_exoribonuclease_2,chr2:232825955-233209060:+,ALPPL2->alkaline_phosphatase,_placental_like_2,chr2:233271553-233275424:+	SNU283_LARGE_INTESTINE	0.97	1	0.406	FALSE	0	0	0	1	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-TA--MT-TN	14	78	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.1624	0.9047	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU283_LARGE_INTESTINE	1	1	1.0671	FALSE	369	2501	205	193	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	DIS3L2--ALPPL2	32	2	DIS3L2	1521	chr2:232826475:+	ALPPL2	39237	chr2:233271767:+	ONLY_REF_SPLICE	YES	1	8	0.97	0.81	0.3712	0.0232	NEIGHBORS[62493],DIS3L2->DIS3_like_3'-5'_exoribonuclease_2,chr2:232825955-233209060:+,ALPPL2->alkaline_phosphatase,_placental_like_2,chr2:233271553-233275424:+	SNU283_LARGE_INTESTINE	0.81	0.97	0.3944	FALSE	0	0	0	1	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	30	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.348	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	1	1	0.348	FALSE	230	193	14	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND6--MT-TE	29	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3364	0.0348	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU283_LARGE_INTESTINE	1	1	0.3712	FALSE	499	1288	110	792	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-TA--MT-TN	21	24	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2436	0.2784	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU283_LARGE_INTESTINE	1	1	0.522	FALSE	369	2501	205	193	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	ZNF654--HMGB2	25	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.29	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU283_LARGE_INTESTINE	1	1	0.29	TRUE	0	0	0	518	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-TA--MT-TN	8	58	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0928	0.6728	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU283_LARGE_INTESTINE	1	1	0.7656	FALSE	369	2501	205	193	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-TA--MT-TN	3	74	MT-TA	1055	chrM:5601:-	MT-TN	3986	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0348	0.8583	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU283_LARGE_INTESTINE	1	1	0.8931	FALSE	369	2501	205	193	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND6--MT-TE	20	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.232	0.0348	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU283_LARGE_INTESTINE	1	1	0.2668	FALSE	499	1288	110	792	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MAN2A1--TMEM232	17	10	MAN2A1	20526	chr5:109159538:+	TMEM232	70690	chr5:109668626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1972	0.116	MAN2A1->chr5:109025067-109205326:+,mannosidase_alpha_class_2A_member_1,TMEM232->chr5:109624934-110074657:-,transmembrane_protein_232	SNU283_LARGE_INTESTINE	1	1	0.3132	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND6--MT-TE	15	14	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.85	1	0.174	0.1624	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU283_LARGE_INTESTINE	0.85	1	0.3364	FALSE	499	1288	110	792	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	18	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2088	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	1	1	0.2088	FALSE	230	193	14	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-TA--MT-TN	18	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2088	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU283_LARGE_INTESTINE	1	1	0.2088	FALSE	369	2501	205	193	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	PTPN12--SRRM3	17	2	PTPN12	1371	chr7:77166962:+	SRRM3	30102	chr7:75864346:+	ONLY_REF_SPLICE	YES	5	1	0.79	0.95	0.1972	0.0232	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,SRRM3->chr7:75831216-75916605:+,serine/arginine_repetitive_matrix_3	SNU283_LARGE_INTESTINE	0.79	0.95	0.2204	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	NRIP1--AF127936.7	17	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1972	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU283_LARGE_INTESTINE	1	1	0.1972	FALSE	292	1546	117	613	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-TA--MT-TN	6	43	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0696	0.4988	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU283_LARGE_INTESTINE	1	1	0.5684	FALSE	369	2501	205	193	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-TA--MT-TC	14	9	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1624	0.1044	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU283_LARGE_INTESTINE	1	1	0.2668	FALSE	462	80	0	856	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	RP4-583P15.15--RTEL1	13	9	RP4-583P15.15	4647	chr20:62366916:+	RTEL1	18035	chr20:62297357:+	ONLY_REF_SPLICE	YES	108	16	0.17	0.58	0.1508	0.1044	LOCAL_REARRANGEMENT:+:[11800],RP4-583P15.15->chr20:62340216-62370456:+,RTEL1->chr20:62289163-62328416:+,regulator_of_telomere_elongation_helicase_1	SNU283_LARGE_INTESTINE	0.17	0.58	0.2552	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	MT-TA--MT-TN	15	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.174	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU283_LARGE_INTESTINE	1	1	0.174	FALSE	369	2501	205	193	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-TA--MT-TN	7	31	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0812	0.3596	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU283_LARGE_INTESTINE	1	1	0.4408	FALSE	369	2501	205	193	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	10	13	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14743	89	0	0.21	0.116	0.1508	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	0.21	0.2668	FALSE	231	217	16	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-TA--MT-TN	3	38	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0.4408	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU283_LARGE_INTESTINE	1	1	0.4756	FALSE	369	2501	205	193	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	12	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13926	8	0	0.62	0.1392	0.0116	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	0.62	0.1508	FALSE	231	205	14	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	12	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1392	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	1	1	0.1392	FALSE	230	198	14	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	11	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15052	8	0	0.71	0.1044	0.1276	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	0.71	0.232	FALSE	231	217	16	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	ASS1--MT-CO3	10	1	ASS1	7359	chr9:133339534:+	MT-CO3	21796	chrM:9549:+	INCL_NON_REF_SPLICE	YES	2146	20213	0.01	0	0.116	0.0116	ASS1->argininosuccinate_synthase_1,chr9:133320316-133376661:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU283_LARGE_INTESTINE	0	0.01	0.1276	FALSE	0	0	0	12	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND6--MT-TE	5	19	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0.2204	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU283_LARGE_INTESTINE	1	1	0.2784	FALSE	499	1288	110	792	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	18	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2490	89	0.01	0.21	0.058	0.2088	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0.01	0.21	0.2668	FALSE	216	209	16	281	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	C15orf57--CBX3	7	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	67	44	0.19	0.27	0.0812	0.1044	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU283_LARGE_INTESTINE	0.19	0.27	0.1856	TRUE	267	562	48	632	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	14976	1	0	0.93	0.0928	0.058	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	0.93	0.1508	FALSE	231	217	16	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	19	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	14181	0	0	1	0.0464	0.2204	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	1	0.2668	FALSE	231	215	16	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	15	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	7537	608	0	0.03	0.058	0.174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	0.03	0.232	FALSE	231	215	16	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	18	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	14831	1	0	0.96	0.0464	0.2088	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	0.96	0.2552	FALSE	231	217	16	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	22	MT-ND4	2226	chrM:11985:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	4360	0	0.01	1	0.0348	0.2552	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0.01	1	0.29	FALSE	216	209	16	281	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-TA--MT-TC	6	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0696	0.116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU283_LARGE_INTESTINE	1	1	0.1856	FALSE	462	80	0	856	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	17	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14425	89	0	0.19	0.0464	0.1972	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	0.19	0.2436	FALSE	231	217	16	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MAN2A1--TMEM232	8	0	MAN2A1	20526	chr5:109159538:+	TMEM232	77290	chr5:109625141:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0928	0	MAN2A1->chr5:109025067-109205326:+,mannosidase_alpha_class_2A_member_1,TMEM232->chr5:109624934-110074657:-,transmembrane_protein_232	SNU283_LARGE_INTESTINE	1	1	0.0928	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	4	MT-ND4	1294	chrM:11053:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	14755	6	0	0.65	0.0812	0.0464	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	0.65	0.1276	FALSE	231	205	14	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	16	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	14425	239	0	0.08	0.0464	0.1856	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	0.08	0.232	FALSE	231	217	16	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	18	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4875	89	0	0.19	0.0348	0.2088	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	0.19	0.2436	FALSE	218	210	16	281	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	NPM1P24--SET	7	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	24	1120	0.25	0.01	0.0812	0.0116	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU283_LARGE_INTESTINE	0.01	0.25	0.0928	FALSE	0	0	0	434	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	6	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	15432	1	0	0.92	0.058	0.0696	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	0.92	0.1276	FALSE	231	217	16	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND6--MT-ND5	6	2	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	3312	1	0	0.0696	0.0232	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SNU283_LARGE_INTESTINE	0	1	0.0928	FALSE	101	855	57	72	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	LMNB2--PLK5	6	1	LMNB2	1327	chr19:2456668:-	PLK5	18837	chr19:1526485:+	ONLY_REF_SPLICE	YES	145	0	0.05	1	0.0696	0.0116	LMNB2->chr19:2427636-2456994:-,lamin_B2,PLK5->chr19:1524073-1535455:+,polo_like_kinase_5	SNU283_LARGE_INTESTINE	0.05	1	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	13	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	14948	0	0	1	0.0348	0.1508	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	1	0.1856	FALSE	231	217	16	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	8	MT-ND4	1521	chrM:11280:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	16652	654	0	0.02	0.0464	0.0928	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	0.02	0.1392	FALSE	231	217	16	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	C15orf57--CBX3	4	7	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	65	45	0.14	0.2	0.0464	0.0812	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU283_LARGE_INTESTINE	0.14	0.2	0.1276	TRUE	267	562	48	632	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	C15orf57--CBX3	4	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	65	45	0.14	0.2	0.0464	0.0812	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU283_LARGE_INTESTINE	0.14	0.2	0.1276	TRUE	267	562	48	632	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	LMNB2--PLK5	5	2	LMNB2	1327	chr19:2456668:-	PLK5	17946	chr19:1525594:+	ONLY_REF_SPLICE	YES	145	0	0.05	1	0.058	0.0232	LMNB2->chr19:2427636-2456994:-,lamin_B2,PLK5->chr19:1524073-1535455:+,polo_like_kinase_5	SNU283_LARGE_INTESTINE	0.05	1	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	10	MT-ND4	1528	chrM:11287:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	NO	17263	1	0	0.93	0.0348	0.116	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	0.93	0.1508	FALSE	231	217	16	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-TA--MT-TC	3	9	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0.1044	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU283_LARGE_INTESTINE	1	1	0.1392	FALSE	462	80	0	856	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-TA--MT-TC	5	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0.0116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU283_LARGE_INTESTINE	1	1	0.0696	FALSE	462	80	0	856	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	RELA--EHBP1L1	4	5	RELA	1269	chr11:65430297:-	EHBP1L1	14399	chr11:65346553:+	INCL_NON_REF_SPLICE	YES	13	26	0.41	0.26	0.0464	0.058	LOCAL_INVERSION:-:+:[60946],RELA->Oncogene{Bushman},RELA_proto-oncogene,_NF-kB_subunit,chr11:65421067-65430565:-,EHBP1L1->EH_domain_binding_protein_1_like_1,chr11:65343509-65360121:+	SNU283_LARGE_INTESTINE	0.26	0.41	0.1044	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	AC092573.2--CDCA7	5	0	AC092573.2	1042	chr2:174220895:-	CDCA7	6828	chr2:174223440:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.058	0	NEIGHBORS_OVERLAP:-:+:[1388],AC092573.2->chr2:174202947-174220936:-,CDCA7->cell_division_cycle_associated_7,chr2:174219548-174233725:+	SNU283_LARGE_INTESTINE	1	1	0.058	FALSE	0	11	0	2	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	CALM3--MT-ND4L	5	0	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU283_LARGE_INTESTINE	1	1	0.058	FALSE	1	1	0	107	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	JUP--MT-CO3	5	0	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU283_LARGE_INTESTINE	1	1	0.058	FALSE	0	0	0	33	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	4	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	15199	3	0	0.73	0.0464	0.0464	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	0.73	0.0928	FALSE	231	205	14	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	4	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	15887	0	0	1	0.0464	0.0464	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	1	0.0928	FALSE	231	217	16	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	1	1	0.058	FALSE	230	198	14	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND6--MT-ND5	5	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SNU283_LARGE_INTESTINE	1	1	0.058	FALSE	101	855	57	72	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	CALM3--MT-ATP8	4	1	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	249	0	0.02	1	0.0464	0.0116	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0.02	1	0.058	FALSE	12	0	0	26	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	CALM3--MT-ATP8	4	1	CALM3	8081	chr19:47113583:+	MT-ATP8	11589	chrM:8406:+	INCL_NON_REF_SPLICE	YES	225	0	0.02	1	0.0464	0.0116	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0.02	1	0.058	FALSE	12	0	0	26	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	14976	1	0	0.89	0.0348	0.058	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	0.89	0.0928	FALSE	231	217	16	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	5	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	15013	0	0	1	0.0348	0.058	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	1	0.0928	FALSE	231	217	16	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	NRIP1--AF127936.7	4	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.23	1	0.0464	0.0116	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU283_LARGE_INTESTINE	0.23	1	0.058	FALSE	125	705	46	456	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	EPC1--ITGB1	4	0	EPC1	4087	chr10:32635691:-	ITGB1	37122	chr10:33224486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0464	0	EPC1->chr10:32556679-32667726:-,enhancer_of_polycomb_homolog_1,ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1	SNU283_LARGE_INTESTINE	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	1	1	0.0464	FALSE	230	198	14	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	1	1	0.0464	FALSE	231	205	14	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	15824	1672	0	0	0.0348	0.0348	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU283_LARGE_INTESTINE	0	0	0.0696	FALSE	231	205	14	283	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND6--MT-ND5	3	2	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	NO	0	3181	1	0	0.0348	0.0232	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SNU283_LARGE_INTESTINE	0	1	0.058	FALSE	101	855	57	72	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	FBRSL1--NOC4L	3	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	47	86	0.08	0.04	0.0348	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	SNU283_LARGE_INTESTINE	0.04	0.08	0.0464	TRUE	3	48	0	26	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	NPM1P24--SET	3	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	24	1048	0.14	0	0.0348	0.0116	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU283_LARGE_INTESTINE	0	0.14	0.0464	FALSE	0	0	0	434	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND6--MT-ND5	3	0	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SNU283_LARGE_INTESTINE	1	1	0.0348	FALSE	101	855	57	72	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU283_LARGE_INTESTINE	1	1	0.0348	FALSE	499	1288	110	792	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	MT-TA--MT-TN	3	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU283_LARGE_INTESTINE	1	1	0.0348	FALSE	369	2501	205	193	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	NRIP1--AF127936.7	2	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	15	0	0.25	1	0.0232	0.0348	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU283_LARGE_INTESTINE	0.25	1	0.058	FALSE	164	806	69	479	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0.0116	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU283_LARGE_INTESTINE	1	1	0.0348	FALSE	515	4851	409	746	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	ADAP1--SUN1	2	0	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SNU283_LARGE_INTESTINE	1	1	0.0232	TRUE	16	22	0	27	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	KIAA1432--RCL1	2	0	KIAA1432	2537	chr9:5656690:+	RCL1	35035	chr9:4823548:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	KIAA1432->chr9:5629025-5776557:+,RCL1->RNA_terminal_phosphate_cyclase_like_1,chr9:4792869-4885917:+	SNU283_LARGE_INTESTINE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SNU283_LARGE_INTESTINE	1	1	0.0232	TRUE	3	14	2	43	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	RPS19--AKT2	2	0	RPS19	2294	chr19:42365281:+	AKT2	23646	chr19:40762961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	SNU283_LARGE_INTESTINE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	ADAP1--C7orf50	1	2	ADAP1	9672	chr7:959605:-	C7orf50	29696	chr7:1049779:-	ONLY_REF_SPLICE	YES	507	364	0.01	0.01	0.0116	0.0232	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_REARRANGEMENT:-:[41579],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	SNU283_LARGE_INTESTINE	0.01	0.01	0.0348	FALSE	0	6	0	10	1	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	ADAP1--HEATR2	1	2	ADAP1	9672	chr7:959605:-	HEATR2	31853	chr7:810108:+	ONLY_REF_SPLICE	NO	507	180	0.01	0.02	0.0116	0.0232	ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,HEATR2->chr7:766338-829190:+	SNU283_LARGE_INTESTINE	0.01	0.02	0.0348	FALSE	0	0	0	1	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	CTC-432M15.3--CTC-575N7.1	1	2	CTC-432M15.3	6563	chr5:130897671:-	CTC-575N7.1	40366	chr5:129116174:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0116	0.0232	CTC-432M15.3->chr5:130761584-131132676:-,CTC-575N7.1->chr5:128836054-129241610:-	SNU283_LARGE_INTESTINE	0.75	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	RABEP1--LYRM9	1	2	RABEP1	20820	chr17:5281527:+	LYRM9	35906	chr17:26207392:-	ONLY_REF_SPLICE	NO	47	15	0.06	0.17	0.0116	0.0232	RABEP1->Oncogene{Bushman},chr17:5185558-5289129:+,rabaptin,_RAB_GTPase_binding_effector_protein_1,LYRM9->LYR_motif_containing_9,chr17:26205340-26221778:-	SNU283_LARGE_INTESTINE	0.06	0.17	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	B3GALNT2--ATP5B	1	1	B3GALNT2	3612	chr1:235657991:-	ATP5B	22367	chr12:57039137:-	ONLY_REF_SPLICE	YES	43	2979	0.04	0	0.0116	0.0116	B3GALNT2->beta-1,3-N-acetylgalactosaminyltransferase_2,chr1:235613238-235667781:-,ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-	SNU283_LARGE_INTESTINE	0	0.04	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	CWC27--CTC-321K16.1	1	1	CWC27	16634	chr5:64181373:+	CTC-321K16.1	27095	chr5:134964927:+	ONLY_REF_SPLICE	YES	28	0	0.07	1	0.0116	0.0116	CWC27->CWC27_spliceosome_associated_protein_homolog,chr5:64064757-64314590:+,CTC-321K16.1->chr5:134895267-134970564:+	SNU283_LARGE_INTESTINE	0.07	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	FBRSL1--NOC4L	1	1	FBRSL1	19923	chr12:133153517:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	125	86	0.02	0.02	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	SNU283_LARGE_INTESTINE	0.02	0.02	0.0232	TRUE	1	4	0	5	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	PCBD2--CTD-2410N18.5	1	1	PCBD2	3623	chr5:134246156:+	CTD-2410N18.5	20762	chr5:133509713:-	ONLY_REF_SPLICE	NO	36	0	0.05	1	0.0116	0.0116	PCBD2->chr5:134240596-134343649:+,pterin-4_alpha-carbinolamine_dehydratase_2,CTD-2410N18.5->chr5:133502861-133561762:-	SNU283_LARGE_INTESTINE	0.05	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU283_LARGE_INTESTINE	SAMD12--EIF3H	1	1	SAMD12	2373	chr8:119592954:-	EIF3H	26651	chr8:117738411:-	ONLY_REF_SPLICE	YES	23	957	0.08	0	0.0116	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hypothalamus=1},SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SNU283_LARGE_INTESTINE	0	0.08	0.0232	FALSE	0	0	0	2	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	TMEM104--SLC9A3R1	1	1	TMEM104	7995	chr17:72791771:+	SLC9A3R1	18588	chr17:72758151:+	ONLY_REF_SPLICE	NO	29	329	0.06	0.01	0.0116	0.0116	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[7130],TMEM104->Oncogene{Bushman},chr17:72772622-72835918:+,transmembrane_protein_104,SLC9A3R1->Oncogene{Bushman},SLC9A3_regulator_1,chr17:72744791-72765492:+	SNU283_LARGE_INTESTINE	0.01	0.06	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000708
SNU283_LARGE_INTESTINE	TMEM206--TIMM17A	1	1	TMEM206	1180	chr1:212588064:-	TIMM17A	17067	chr1:201926409:+	ONLY_REF_SPLICE	YES	31	0	0.06	1	0.0116	0.0116	TMEM206->chr1:212537273-212588243:-,transmembrane_protein_206,TIMM17A->chr1:201924619-201939789:+,translocase_of_inner_mitochondrial_membrane_17_homolog_A_(yeast)	SNU283_LARGE_INTESTINE	0.06	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000708
SNU899_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	40	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4926	0.0493	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.5419	FALSE	462	80	0	856	0	FALSE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	9	4	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1108	0.0493	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.1601	TRUE	508	994	45	981	0	FALSE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	NCL--PTMA	9	0	NCL	6884	chr2:232325380:-	PTMA	22009	chr2:232576646:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1108	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.1108	TRUE	1	0	0	7	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	COL17A1--WDR96	7	2	COL17A1	34650	chr10:105798829:-	WDR96	69376	chr10:105927495:-	ONLY_REF_SPLICE	YES	237	0	0.04	1	0.0862	0.0246	LOCAL_REARRANGEMENT:-:[43886],COL17A1->chr10:105791044-105845760:-,collagen_type_XVII_alpha_1,WDR96->chr10:105889646-105992120:-	SNU899_UPPER_AERODIGESTIVE_TRACT	0.04	1	0.1108	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.73	1	0.0739	0.0616	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU899_UPPER_AERODIGESTIVE_TRACT	0.73	1	0.1355	FALSE	499	1288	110	792	0	FALSE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	7	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0862	0.0123	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0985	FALSE	515	4851	409	746	0	FALSE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	7	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0862	FALSE	499	1288	110	792	0	FALSE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0862	FALSE	462	80	0	856	0	FALSE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	NCL--PTMA	6	0	NCL	6884	chr2:232325380:-	PTMA	22012	chr2:232576649:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0739	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0739	TRUE	1	0	0	7	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0.0616	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.1109	FALSE	499	1288	110	792	0	FALSE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0.0369	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0738	FALSE	462	80	0	856	0	FALSE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0.0369	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0738	FALSE	462	80	0	856	0	FALSE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	DENND2C--DNAJC2	3	0	DENND2C	21172	chr1:115130337:-	DNAJC2	38330	chr7:102964072:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0369	0	DENND2C->DENN_domain_containing_2C,chr1:115125469-115213043:-,DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	LAMA5--WFDC2	3	0	LAMA5	24542	chr20:60899621:-	WFDC2	44087	chr20:44098408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5,WFDC2->WAP_four-disulfide_core_domain_2,chr20:44098346-44110172:+	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	PLXNA1--MTATP6P1	3	0	PLXNA1	28463	chr3:126755625:+	MTATP6P1	32361	chr1:569363:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	PLXNA1->chr3:126707437-126756235:+,plexin_A1,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	PROSER1--CTD-2192J16.15	3	0	PROSER1	1478	chr13:39611775:-	CTD-2192J16.15	20836	chr19:12754716:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	PROSER1->chr13:39584003-39612252:-,proline_and_serine_rich_1,CTD-2192J16.15->chr19:12754089-12754733:-	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	RHBDF2--RP11-284F21.10	3	0	RHBDF2	8326	chr17:74474982:-	RP11-284F21.10	19564	chr1:156614431:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	RHBDF2->chr17:74466973-74497872:-,rhomboid_5_homolog_2_(Drosophila),RP11-284F21.10->chr1:156611458-156614679:-	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	RP11-429J17.7--LGALS8	3	0	RP11-429J17.7	3860	chr8:144840835:-	LGALS8	11478	chr1:236689293:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	RP11-429J17.7->chr8:144840323-144853992:-,LGALS8->chr1:236681300-236716281:+,lectin,_galactoside_binding_soluble_8	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	SFPQ--ZBTB4	3	0	SFPQ	4785	chr1:35654850:-	ZBTB4	27705	chr17:7363376:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,ZBTB4->chr17:7362685-7387582:-,zinc_finger_and_BTB_domain_containing_4	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	TRAM2--PHACTR4	3	0	TRAM2	11977	chr6:52366379:-	PHACTR4	38993	chr1:28823883:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	TRAM2->chr6:52362200-52441713:-,translocation_associated_membrane_protein_2,PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	TSPAN14--SOD2	3	0	TSPAN14	15764	chr10:82277760:+	SOD2	42542	chr6:160113757:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	TSPAN14->chr10:82213922-82292879:+,tetraspanin_14,SOD2->chr6:160090089-160183561:-,superoxide_dismutase_2,_mitochondrial	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	WIPF2--MARK3	3	0	WIPF2	12118	chr17:38435617:+	MARK3	32811	chr14:103932032:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0.0369	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0615	FALSE	407	2205	196	549	0	FALSE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0246	0.0369	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0615	FALSE	192	492	57	212	0	FALSE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	MYO5A--FIP1L1	2	1	MYO5A	1271	chr15:52820977:-	FIP1L1	63515	chr4:54265897:+	ONLY_REF_SPLICE	YES	0	18	1	0.14	0.0246	0.0123	MYO5A->chr15:52599480-52821247:-,myosin_VA,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	SNU899_UPPER_AERODIGESTIVE_TRACT	0.14	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	ANKRD40--RTN4	2	0	ANKRD40	5286	chr17:48774301:-	RTN4	25832	chr2:55214834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	ANKRD40->ankyrin_repeat_domain_40,chr17:48770551-48785285:-,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	GSDMD--OPLAH	2	0	GSDMD	5092	chr8:144640621:+	OPLAH	18281	chr8:145111162:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	GSDMD->chr8:144635377-144645232:+,gasdermin_D,OPLAH->5-oxoprolinase_(ATP-hydrolysing),chr8:145106167-145118735:-	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	NHLRC3--ITCH	2	0	NHLRC3	2406	chr13:39613848:+	ITCH	19090	chr20:33001548:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	NHLRC3->NHL_repeat_containing_3,chr13:39612443-39624246:+,ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	NHLRC3--SLK	2	0	NHLRC3	2406	chr13:39613848:+	SLK	28298	chr10:105779492:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	NHLRC3->NHL_repeat_containing_3,chr13:39612443-39624246:+,SLK->STE20_like_kinase,chr10:105726959-105788991:+	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	RNF2--PDLIM1	2	0	RNF2	1286	chr1:185014781:+	PDLIM1	16332	chr10:97031541:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	RNF2->chr1:185014496-185071740:+,ring_finger_protein_2,PDLIM1->PDZ_and_LIM_domain_1,chr10:96997329-97050781:-	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	TMEM110--PNKD	2	0	TMEM110	4530	chr3:52886619:-	PNKD	27883	chr2:219204506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	TMEM110->chr3:52870235-52931612:-,transmembrane_protein_110,PNKD->chr2:219135115-219211516:+,paroxysmal_nonkinesigenic_dyskinesia	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	COL17A1--WDR96	1	2	COL17A1	34650	chr10:105798829:-	WDR96	68271	chr10:105928606:-	ONLY_REF_SPLICE	NO	237	0	0.01	1	0.0123	0.0246	LOCAL_REARRANGEMENT:-:[43886],COL17A1->chr10:105791044-105845760:-,collagen_type_XVII_alpha_1,WDR96->chr10:105889646-105992120:-	SNU899_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.0369	FALSE	0	0	0	1	0	FALSE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	RBM25--PRC1	1	1	RBM25	11994	chr14:73566458:+	PRC1	35387	chr15:91525211:-	ONLY_REF_SPLICE	NO	29	49	0.06	0.04	0.0123	0.0123	RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+,PRC1->chr15:91509270-91538859:-,protein_regulator_of_cytokinesis_1	SNU899_UPPER_AERODIGESTIVE_TRACT	0.04	0.06	0.0246	TRUE	0	0	0	1	0	FALSE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0.0123	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0246	FALSE	93	270	15	244	0	FALSE	ACH-000692
SNU899_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0.0123	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU899_UPPER_AERODIGESTIVE_TRACT	1	1	0.0246	FALSE	467	2173	244	435	0	FALSE	ACH-000692
GCIY_STOMACH	C21orf33--SHISA5	31	21	C21orf33	5159	chr21:45560224:+	SHISA5	17260	chr3:48520666:-	ONLY_REF_SPLICE	YES	62	90	0.46	0.37	0.3339	0.2262	C21orf33->chr21:45553487-45565605:+,chromosome_21_open_reading_frame_33,SHISA5->chr3:48509197-48542259:-,shisa_family_member_5	GCIY_STOMACH	0.37	0.46	0.5601	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	TIMM23B--LINC00843	23	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2477	0.2154	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	GCIY_STOMACH	1	1	0.4631	TRUE	508	994	45	981	0	FALSE	ACH-000047
GCIY_STOMACH	AC104389.28--HBE1	16	27	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	25	3	0.63	0.93	0.1723	0.2908	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	GCIY_STOMACH	0.63	0.93	0.4631	TRUE	0	48	0	65	48	FALSE	ACH-000047
GCIY_STOMACH	KIF1B--UBE4B	18	16	KIF1B	31519	chr1:10381915:+	UBE4B	65983	chr1:10132086:+	ONLY_REF_SPLICE	YES	69	134	0.33	0.2	0.1939	0.1723	YOSHIHARA_TCGA_num_samples[GBM:1|KIRC:1],LOCAL_REARRANGEMENT:+:[29566],KIF1B->chr1:10270863-10441661:+,kinesin_family_member_1B,UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B	GCIY_STOMACH	0.2	0.33	0.3662	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	CDC42--LINC00339	15	16	CDC42	5459	chr1:22408287:+	LINC00339	13994	chr1:22351785:+	INCL_NON_REF_SPLICE	YES	475	0	0.06	1	0.1616	0.1723	LOCAL_REARRANGEMENT:+:[21404],CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,LINC00339->chr1:22351681-22357716:+,long_intergenic_non-protein_coding_RNA_339	GCIY_STOMACH	0.06	1	0.3339	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	ASCC1--MICU1	14	16	ASCC1	7701	chr10:73963185:-	MICU1	44374	chr10:74135630:-	ONLY_REF_SPLICE	YES	90	88	0.25	0.25	0.1508	0.1723	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	GCIY_STOMACH	0.25	0.25	0.3231	TRUE	0	0	0	2	0	TRUE	ACH-000047
GCIY_STOMACH	MT-ND5--MT-ND6	10	23	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	3957	1	0.01	0.1077	0.2477	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	GCIY_STOMACH	0.01	1	0.3554	FALSE	26	124	4	93	0	FALSE	ACH-000047
GCIY_STOMACH	TIMM23--RP11-464F9.1	15	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	82	1	0.16	0.94	0.1616	0.0108	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	GCIY_STOMACH	0.16	0.94	0.1724	TRUE	519	3926	326	965	0	FALSE	ACH-000047
GCIY_STOMACH	RP11-396K3.1--AC010091.1	14	4	RP11-396K3.1	1399	chr7:72569431:+	AC010091.1	28904	chr7:81236959:-	ONLY_REF_SPLICE	YES	39	0	0.32	1	0.1508	0.0431	RP11-396K3.1->chr7:72569033-72619657:+,AC010091.1->chr7:81205702-81255532:-	GCIY_STOMACH	0.32	1	0.1939	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	ZNF706--UBR5	11	13	ZNF706	7999	chr8:102211423:-	UBR5	16322	chr8:103373854:-	ONLY_REF_SPLICE	YES	342	56	0.07	0.3	0.1185	0.14	ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706,UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5	GCIY_STOMACH	0.07	0.3	0.2585	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	PAWR--RP1-78O14.1	11	10	PAWR	8153	chr12:80014856:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	25	0	0.46	1	0.1185	0.1077	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	GCIY_STOMACH	0.46	1	0.2262	FALSE	0	1	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	SMARCA4--MOCS2	3	39	SMARCA4	1253	chr19:11071850:+	MOCS2	48121	chr5:52404473:-	ONLY_REF_SPLICE	YES	21	5	0.67	0.89	0.0323	0.4201	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,MOCS2->chr5:52391509-52405893:-,molybdenum_cofactor_synthesis_2	GCIY_STOMACH	0.67	0.89	0.4524	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	C21orf33--SHISA5	9	14	C21orf33	3787	chr21:45557178:+	SHISA5	17260	chr3:48520666:-	ONLY_REF_SPLICE	YES	84	90	0.21	0.2	0.0969	0.1508	C21orf33->chr21:45553487-45565605:+,chromosome_21_open_reading_frame_33,SHISA5->chr3:48509197-48542259:-,shisa_family_member_5	GCIY_STOMACH	0.2	0.21	0.2477	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	MT-ND5--MT-ND4	5	30	MT-ND5	2718	chrM:14054:+	MT-ND4	6199	chrM:11146:+	INCL_NON_REF_SPLICE	YES	14	20231	0.71	0	0.0539	0.3231	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	GCIY_STOMACH	0	0.71	0.377	FALSE	47	27	1	24	0	FALSE	ACH-000047
GCIY_STOMACH	NOL12--LGALS1	10	6	NOL12	31571	chr22:38167743:+	LGALS1	38326	chr22:38072993:+	ONLY_REF_SPLICE	YES	16	9	0.5	0.64	0.1077	0.0646	LOCAL_REARRANGEMENT:+:[1867],NOL12->chr22:38077680-38170137:+,nucleolar_protein_12,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	GCIY_STOMACH	0.5	0.64	0.1723	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	AC104389.28--HBE1	4	29	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	25	0	0.57	1	0.0431	0.3124	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	GCIY_STOMACH	0.57	1	0.3555	TRUE	0	35	0	55	35	FALSE	ACH-000047
GCIY_STOMACH	MT-ND5--MT-ND4	6	11	MT-ND5	2317	chrM:13653:+	MT-ND4	6294	chrM:11241:+	INCL_NON_REF_SPLICE	YES	5100	19432	0	0	0.0646	0.1185	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	GCIY_STOMACH	0	0	0.1831	FALSE	47	29	1	24	0	FALSE	ACH-000047
GCIY_STOMACH	AP003900.6--AP000345.1	8	1	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0862	0.0108	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	GCIY_STOMACH	0.82	1	0.097	TRUE	0	8	0	37	1	FALSE	ACH-000047
GCIY_STOMACH	ARPC1A--AC004893.11	6	9	ARPC1A	2200	chr7:98931040:+	AC004893.11	29771	chr7:98645278:+	ONLY_REF_SPLICE	YES	288	15	0.05	0.5	0.0646	0.0969	ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+,AC004893.11->chr7:98610788-98645863:+	GCIY_STOMACH	0.05	0.5	0.1615	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	MT-ND5--MT-ND4	4	16	MT-ND5	1408	chrM:12744:+	MT-ND4	6001	chrM:10948:+	INCL_NON_REF_SPLICE	YES	1084	7386	0.02	0	0.0431	0.1723	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	GCIY_STOMACH	0	0.02	0.2154	FALSE	17	23	0	20	0	FALSE	ACH-000047
GCIY_STOMACH	MT-ND5--MT-ND4	7	3	MT-ND5	2112	chrM:13448:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	10477	12232	0	0	0.0754	0.0323	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	GCIY_STOMACH	0	0	0.1077	FALSE	47	29	1	25	0	FALSE	ACH-000047
GCIY_STOMACH	RP11-123O10.4--GRIP1	7	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0754	0.0215	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	GCIY_STOMACH	1	1	0.0969	FALSE	416	2512	207	587	0	FALSE	ACH-000047
GCIY_STOMACH	SPRTN--DISC1	7	2	SPRTN	2501	chr1:231474350:+	DISC1	17702	chr1:231829572:+	ONLY_REF_SPLICE	YES	10	1	0.47	0.9	0.0754	0.0215	SPRTN->SprT-like_N-terminal_domain,chr1:231472850-231490769:+,DISC1->chr1:231762561-232177018:+,disrupted_in_schizophrenia_1	GCIY_STOMACH	0.47	0.9	0.0969	TRUE	0	0	0	2	0	TRUE	ACH-000047
GCIY_STOMACH	GON4L--ARHGEF2	3	16	GON4L	29395	chr1:155733103:-	ARHGEF2	63819	chr1:155932974:-	ONLY_REF_SPLICE	YES	48	140	0.28	0.12	0.0323	0.1723	LOCAL_REARRANGEMENT:-:[87439],GON4L->chr1:155719508-155829191:-,gon-4_like,ARHGEF2->Oncogene{Bushman},Rho/Rac_guanine_nucleotide_exchange_factor_2,chr1:155916630-155976861:-	GCIY_STOMACH	0.12	0.28	0.2046	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	SMARCA4--MOCS2	1	22	SMARCA4	1253	chr19:11071850:+	MOCS2	49543	chr5:52403051:-	ONLY_REF_SPLICE	YES	21	46	0.52	0.33	0.0108	0.237	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,MOCS2->chr5:52391509-52405893:-,molybdenum_cofactor_synthesis_2	GCIY_STOMACH	0.33	0.52	0.2478	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	TTK--SH3BGRL2	5	6	TTK	9448	chr6:80724303:+	SH3BGRL2	26788	chr6:80406202:+	ONLY_REF_SPLICE	YES	100	9	0.1	0.55	0.0539	0.0646	TTK->TTK_protein_kinase,chr6:80713604-80752244:+,SH3BGRL2->Oncogene{Bushman},SH3_domain_binding_glutamate_rich_protein_like_2,chr6:80341000-80413372:+	GCIY_STOMACH	0.1	0.55	0.1185	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	BOLA3--CCDC142	5	5	BOLA3	4895	chr2:74369399:-	CCDC142	15727	chr2:74699923:-	ONLY_REF_SPLICE	YES	4	3	0.71	0.77	0.0539	0.0539	BOLA3->bolA_family_member_3,chr2:74362525-74375121:-,CCDC142->chr2:74699113-74710535:-,coiled-coil_domain_containing_142	GCIY_STOMACH	0.71	0.77	0.1078	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	PPL--C16orf89	5	3	PPL	20314	chr16:4935629:-	C16orf89	33280	chr16:5097965:-	INCL_NON_REF_SPLICE	YES	47	0	0.15	1	0.0539	0.0323	LOCAL_REARRANGEMENT:-:[83381],PPL->chr16:4932508-5010742:-,periplakin,C16orf89->chr16:5094123-5116111:-,chromosome_16_open_reading_frame_89	GCIY_STOMACH	0.15	1	0.0862	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	RP1-34H18.1--NAV3	4	6	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0431	0.0646	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	GCIY_STOMACH	1	1	0.1077	TRUE	254	575	65	124	0	FALSE	ACH-000047
GCIY_STOMACH	CCAT1--KB-1562D12.1	5	1	CCAT1	1279	chr8:128231055:-	KB-1562D12.1	8182	chr8:102473845:-	ONLY_REF_SPLICE	YES	6	0	0.5	1	0.0539	0.0108	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),KB-1562D12.1->chr8:102473405-102504727:-	GCIY_STOMACH	0.5	1	0.0647	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	PLEKHA5--RP11-361I14.2	4	5	PLEKHA5	3233	chr12:19285384:+	RP11-361I14.2	54342	chr12:18890448:+	ONLY_REF_SPLICE	YES	52	0	0.15	1	0.0431	0.0539	PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5,RP11-361I14.2->chr12:18867729-18890812:+	GCIY_STOMACH	0.15	1	0.097	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	ASCC1--MICU1	1	16	ASCC1	7701	chr10:73963185:-	MICU1	43254	chr10:74139341:-	ONLY_REF_SPLICE	YES	90	101	0.16	0.14	0.0108	0.1723	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	GCIY_STOMACH	0.14	0.16	0.1831	TRUE	0	0	0	2	0	TRUE	ACH-000047
GCIY_STOMACH	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GCIY_STOMACH	1	1	0.0539	FALSE	499	1288	110	792	0	FALSE	ACH-000047
GCIY_STOMACH	MT-ND6--MT-TE	4	3	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0.0323	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GCIY_STOMACH	1	1	0.0754	FALSE	499	1288	110	792	0	FALSE	ACH-000047
GCIY_STOMACH	CDC42--LINC00339	1	13	CDC42	5459	chr1:22408287:+	LINC00339	17312	chr1:22356773:+	ONLY_REF_SPLICE	NO	475	19	0.03	0.42	0.0108	0.14	LOCAL_REARRANGEMENT:+:[21404],CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,LINC00339->chr1:22351681-22357716:+,long_intergenic_non-protein_coding_RNA_339	GCIY_STOMACH	0.03	0.42	0.1508	TRUE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	PAWR--RP1-78O14.1	3	5	PAWR	2369	chr12:80083509:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	13	0	0.38	1	0.0323	0.0539	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	GCIY_STOMACH	0.38	1	0.0862	FALSE	0	7	0	7	0	FALSE	ACH-000047
GCIY_STOMACH	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	22	1	0.19	0.0323	0.0215	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GCIY_STOMACH	0.19	1	0.0538	TRUE	458	1351	185	561	0	FALSE	ACH-000047
GCIY_STOMACH	FHOD3--MOCOS	3	1	FHOD3	1287	chr18:33877963:+	MOCOS	51285	chr18:33828885:+	ONLY_REF_SPLICE	YES	39	8	0.09	0.33	0.0323	0.0108	LOCAL_REARRANGEMENT:+:[25557],FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,MOCOS->chr18:33767482-33852120:+,molybdenum_cofactor_sulfurase	GCIY_STOMACH	0.09	0.33	0.0431	TRUE	0	0	0	2	0	TRUE	ACH-000047
GCIY_STOMACH	NRIP1--AF127936.7	3	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.0323	0.0108	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GCIY_STOMACH	0.2	1	0.0431	FALSE	125	705	46	456	0	FALSE	ACH-000047
GCIY_STOMACH	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	69	0.8	0.05	0.0323	0.0108	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	GCIY_STOMACH	0.05	0.8	0.0431	FALSE	16	356	14	466	0	FALSE	ACH-000047
GCIY_STOMACH	AP003900.6--AP000345.1	3	0	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	GCIY_STOMACH	1	1	0.0323	TRUE	4	17	0	31	0	FALSE	ACH-000047
GCIY_STOMACH	CDCA7--LRRC1	3	0	CDCA7	8756	chr2:174232559:+	LRRC1	26930	chr6:53784444:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	CDCA7->cell_division_cycle_associated_7,chr2:174219548-174233725:+,LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1	GCIY_STOMACH	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	DOT1L--LGALS3BP	3	0	DOT1L	25402	chr19:2222354:+	LGALS3BP	43266	chr17:76968989:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+,LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein	GCIY_STOMACH	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	ITPR2--TM7SF3	3	0	ITPR2	2580	chr12:26943090:-	TM7SF3	70644	chr12:27156323:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,TM7SF3->chr12:27126128-27167367:-,transmembrane_7_superfamily_member_3	GCIY_STOMACH	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GCIY_STOMACH	1	1	0.0323	FALSE	499	1288	110	792	0	FALSE	ACH-000047
GCIY_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GCIY_STOMACH	1	1	0.0323	FALSE	499	1288	110	792	0	FALSE	ACH-000047
GCIY_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GCIY_STOMACH	1	1	0.0323	FALSE	499	1288	110	792	0	FALSE	ACH-000047
GCIY_STOMACH	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GCIY_STOMACH	1	1	0.0323	FALSE	292	1546	117	613	0	FALSE	ACH-000047
GCIY_STOMACH	PCMTD1--GPRIN3	3	0	PCMTD1	7395	chr8:52758221:-	GPRIN3	22665	chr4:90171384:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,GPRIN3->GPRIN_family_member_3,chr4:90157537-90229161:-	GCIY_STOMACH	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	RBM14--AC018766.6	3	0	RBM14	1476	chr11:66384528:+	AC018766.6	12840	chr19:50357848:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	RBM14->RNA_binding_motif_protein_14,chr11:66384053-66394818:+,AC018766.6->chr19:50356144-50358224:-	GCIY_STOMACH	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	RBMS1--AC009961.3	3	0	RBMS1	8516	chr2:161223727:-	AC009961.3	33013	chr2:160567405:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-,AC009961.3->chr2:160527219-160568946:-	GCIY_STOMACH	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	RPL23AP79--ATP2B1	3	0	RPL23AP79	2311	chr19:59086955:+	ATP2B1	16768	chr12:90049884:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	RPL23AP79->chr19:59084870-59111168:+,ribosomal_protein_L23a_pseudogene_79,ATP2B1->ATPase_plasma_membrane_Ca2+_transporting_1,chr12:89981828-90103077:-	GCIY_STOMACH	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	LPPR3--SBNO2	2	3	LPPR3	3901	chr19:814434:-	SBNO2	28015	chr19:1112536:-	ONLY_REF_SPLICE	NO	6	56	0.45	0.08	0.0215	0.0323	LPPR3->chr19:812518-821967:-,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	GCIY_STOMACH	0.08	0.45	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	RP11-115K3.1--VMP1	1	6	RP11-115K3.1	1199	chr17:36105404:+	VMP1	15724	chr17:57851115:+	ONLY_REF_SPLICE	NO	4	84	0.64	0.08	0.0108	0.0646	RP11-115K3.1->chr17:36105206-36108563:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	GCIY_STOMACH	0.08	0.64	0.0754	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	HELLS--TBC1D12	2	1	HELLS	6037	chr10:96322633:+	TBC1D12	35990	chr10:96201653:+	ONLY_REF_SPLICE	YES	28	28	0.1	0.1	0.0215	0.0108	LOCAL_REARRANGEMENT:+:[9860],HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific,TBC1D12->TBC1_domain_family_member_12,chr10:96162261-96295687:+	GCIY_STOMACH	0.1	0.1	0.0323	TRUE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	INPP5A--JAKMIP3	2	1	INPP5A	2394	chr10:134421460:+	JAKMIP3	46435	chr10:133995861:+	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0215	0.0108	INPP5A->chr10:134351324-134596979:+,inositol_polyphosphate-5-phosphatase_A,JAKMIP3->Janus_kinase_and_microtubule_interacting_protein_3,chr10:133918175-133998313:+	GCIY_STOMACH	0.25	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	APP--SUGT1P	2	0	APP	10490	chr21:27423316:-	SUGT1P	32176	chr9:33510709:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,SUGT1P->chr9:33503653-33510709:-	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	ATR--PLEKHA1	2	0	ATR	1181	chr3:142297488:-	PLEKHA1	78916	chr10:124189140:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	C17orf62--CDK10	2	0	C17orf62	1130	chr17:80408576:-	CDK10	17150	chr16:89755660:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	C17orf62->chr17:80400465-80408705:-,chromosome_17_open_reading_frame_62,CDK10->chr16:89747145-89762772:+,cyclin-dependent_kinase_10	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	CCDC40--RNF213	2	0	CCDC40	10551	chr17:78039405:+	RNF213	39706	chr17:78268519:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	CCDC40->chr17:78010435-78074412:+,coiled-coil_domain_containing_40,RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	CRIM1--MXI1	2	0	CRIM1	5875	chr2:36623930:+	MXI1	35018	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	CXorf38--LARP1	2	0	CXorf38	1561	chrX:40506259:-	LARP1	18454	chr5:154172182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	CXorf38->chrX:40488285-40506819:-,chromosome_X_open_reading_frame_38,LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	FAM117A--TAC4	2	0	FAM117A	5206	chr17:47841254:-	TAC4	21208	chr17:47921519:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	LOCAL_REARRANGEMENT:-:[49129],FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,TAC4->chr17:47915671-47925379:-,tachykinin_4_(hemokinin)	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	FAM69A--HIPK1	2	0	FAM69A	1125	chr1:93426933:-	HIPK1	15277	chr1:114483004:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	FAM69A->chr1:93307724-93427057:-,family_with_sequence_similarity_69_member_A,HIPK1->chr1:114471814-114520426:+,homeodomain_interacting_protein_kinase_1	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	JAK1--C19orf68	2	0	JAK1	23542	chr1:65305286:-	C19orf68	33224	chr19:48675051:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	JAK1->ArcherDX_panel,FoundationOne_panel,Janus_kinase_1,Oncogene{Bushman},chr1:65298912-65432187:-,C19orf68->chr19:48673949-48700877:+,chromosome_19_open_reading_frame_68	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	LRRC1--RP11-438J1.1	2	0	LRRC1	1919	chr6:53660213:+	RP11-438J1.1	27401	chr3:10319963:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1,RP11-438J1.1->chr3:10291056-10327480:+	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	MED13L--ATG5	2	0	MED13L	35177	chr12:116401212:-	ATG5	51502	chr6:106634551:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,ATG5->autophagy_related_5,chr6:106632351-106773666:-	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	MXI1--SLC4A7	2	0	MXI1	8916	chr10:112039052:+	SLC4A7	18708	chr3:27493989:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+,SLC4A7->chr3:27414214-27525911:-,solute_carrier_family_4_member_7	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	NOTCH1--ZBTB18	2	0	NOTCH1	2216	chr9:139438476:-	ZBTB18	32953	chr1:244217090:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	NOTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:139388896-139440314:-,notch_1,ZBTB18->chr1:244214585-244220778:+,zinc_finger_and_BTB_domain_containing_18	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	OCEL1--ZDHHC8	2	0	OCEL1	1150	chr19:17337162:+	ZDHHC8	9349	chr22:20126717:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	OCEL1->chr19:17337013-17340028:+,occludin/ELL_domain_containing_1,ZDHHC8->chr22:20116979-20135530:+,zinc_finger_DHHC-type_containing_8	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	OPA3--NOVA2	2	0	OPA3	2338	chr19:46087881:-	NOVA2	23472	chr19:46444203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	OPA3->chr19:46030685-46105470:-,optic_atrophy_3_(autosomal_recessive,_with_chorea_and_spastic_paraplegia),NOVA2->NOVA_alternative_splicing_regulator_2,chr19:46436992-46476804:-	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	PAWR--RP1-78O14.1	2	0	PAWR	8153	chr12:80014856:-	RP1-78O14.1	32112	chr12:79735189:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	GCIY_STOMACH	1	1	0.0215	FALSE	0	1	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	PPP1R9A--CUX1	2	0	PPP1R9A	5004	chr7:94540820:+	CUX1	42510	chr7:101671378:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	PTPRG--PEG10	2	0	PTPRG	2909	chr3:61734656:+	PEG10	48784	chr7:94292646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,PEG10->Oncogene{Bushman},chr7:94285637-94299007:+,paternally_expressed_10	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	RP11-115K3.1--VMP1	1	4	RP11-115K3.1	1199	chr17:36105404:+	VMP1	16856	chr17:57886157:+	ONLY_REF_SPLICE	YES	4	99	0.56	0.05	0.0108	0.0431	RP11-115K3.1->chr17:36105206-36108563:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	GCIY_STOMACH	0.05	0.56	0.0539	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	SCARB1--UBC	2	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	GCIY_STOMACH	1	1	0.0215	TRUE	55	66	6	101	0	FALSE	ACH-000047
GCIY_STOMACH	SLC2A2--TGFA	2	0	SLC2A2	1095	chr3:170744445:-	TGFA	17655	chr2:70742044:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	SLC2A2->chr3:170714137-170744539:-,solute_carrier_family_2_member_2,TGFA->Oncogene{Bushman},chr2:70674412-70781325:-,transforming_growth_factor_alpha	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	STAT5B--PTRF	2	0	STAT5B	1460	chr17:40428266:-	PTRF	24274	chr17:40557406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B,PTRF->chr17:40554470-40575535:-,polymerase_I_and_transcript_release_factor	GCIY_STOMACH	1	1	0.0215	TRUE	0	1	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	TPD52L1--CIC	2	0	TPD52L1	5712	chr6:125541339:+	CIC	30057	chr19:42790923:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	TPD52L1->chr6:125440195-125585553:+,tumor_protein_D52-like_1,CIC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},capicua_transcriptional_repressor,chr19:42772689-42799949:+	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	TTC3--NUMBL	2	0	TTC3	1139	chr21:38445664:+	NUMBL	68639	chr19:41192900:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,NUMBL->NUMB_like,_endocytic_adaptor_protein,chr19:41172596-41196877:-	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	UBE2D2--TIMMDC1	2	0	UBE2D2	1182	chr5:138906197:+	TIMMDC1	18310	chr3:119236052:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2,TIMMDC1->chr3:119217379-119243937:+,translocase_of_inner_mitochondrial_membrane_domain_containing_1	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	UBE2V2--PCM1	2	0	UBE2V2	1071	chr8:48921030:+	PCM1	21678	chr8:17793098:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	UBE2V2->chr8:48920960-48977268:+,ubiquitin_conjugating_enzyme_E2_V2,PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	UBLCP1--RUNDC3B	2	0	UBLCP1	1280	chr5:158690368:+	RUNDC3B	17239	chr7:87280138:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	UBLCP1->chr5:158690089-158713044:+,ubiquitin_like_domain_containing_CTD_phosphatase_1,RUNDC3B->RUN_domain_containing_3B,chr7:87256864-87461611:+	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	WDPCP--IVNS1ABP	2	0	WDPCP	35215	chr2:63401805:-	IVNS1ABP	48024	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	GCIY_STOMACH	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	CTBP2--GNAS	1	3	CTBP2	8057	chr10:126799559:-	GNAS	43530	chr20:57470667:+	ONLY_REF_SPLICE	NO	49	213	0.08	0.02	0.0108	0.0323	CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	GCIY_STOMACH	0.02	0.08	0.0431	TRUE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	NAA15--MGST2	1	2	NAA15	1377	chr4:140222985:+	MGST2	36799	chr4:140599697:+	ONLY_REF_SPLICE	YES	94	11	0.03	0.21	0.0108	0.0215	NAA15->N(alpha)-acetyltransferase_15,_NatA_auxiliary_subunit,chr4:140222609-140341187:+,MGST2->chr4:140586922-140661899:+,microsomal_glutathione_S-transferase_2	GCIY_STOMACH	0.03	0.21	0.0323	TRUE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	NO	0	41	1	0.07	0.0108	0.0215	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GCIY_STOMACH	0.07	1	0.0323	TRUE	465	1949	224	605	0	FALSE	ACH-000047
GCIY_STOMACH	AC079466.1--ATF2	1	1	AC079466.1	1417	chr19:29098011:+	ATF2	26816	chr2:175945493:-	ONLY_REF_SPLICE	NO	1125	25	0	0.07	0.0108	0.0108	AC079466.1->chr19:29097595-29106136:+,ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-	GCIY_STOMACH	0	0.07	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	ATP6V1C1--SYBU	1	1	ATP6V1C1	1163	chr8:104033453:+	SYBU	33629	chr8:110598391:-	ONLY_REF_SPLICE	NO	92	40	0.02	0.05	0.0108	0.0108	ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+,SYBU->chr8:110586207-110704020:-,syntabulin	GCIY_STOMACH	0.02	0.05	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	BRD2--EIF4B	1	1	BRD2	12473	chr6:32948241:+	EIF4B	25532	chr12:53421799:+	ONLY_REF_SPLICE	YES	196	454	0.01	0	0.0108	0.0108	BRD2->Oncogene{Bushman},bromodomain_containing_2,chr6:32936437-32949282:+,EIF4B->chr12:53399942-53435993:+,eukaryotic_translation_initiation_factor_4B	GCIY_STOMACH	0	0.01	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	EFHB--RAB5A	1	1	EFHB	18608	chr3:19924042:-	RAB5A	24727	chr3:19992298:+	ONLY_REF_SPLICE	YES	22	54	0.08	0.04	0.0108	0.0108	LOCAL_INVERSION:-:+:[54],EFHB->EF-hand_domain_family_member_B,chr3:19920964-19988517:-,RAB5A->RAB5A,_member_RAS_oncogene_family,chr3:19988571-20026667:+	GCIY_STOMACH	0.04	0.08	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	ERGIC2--CCDC91	1	1	ERGIC2	6211	chr12:29521174:-	CCDC91	39164	chr12:28458582:+	ONLY_REF_SPLICE	YES	54	25	0.04	0.07	0.0108	0.0108	ERGIC2->ERGIC_and_golgi_2,chr12:29490285-29534122:-,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	GCIY_STOMACH	0.04	0.07	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	FTX--WHSC1L1	1	1	FTX	9567	chrX:73494177:-	WHSC1L1	23795	chr8:38205733:-	ONLY_REF_SPLICE	YES	1	53	0.67	0.04	0.0108	0.0108	FTX->FTX_transcript,_XIST_regulator_(non-protein_coding),chrX:73183790-73513409:-,WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-	GCIY_STOMACH	0.04	0.67	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	NCAPD2--STRN	1	1	NCAPD2	2870	chr12:6604391:+	STRN	33561	chr2:37105170:-	ONLY_REF_SPLICE	YES	269	68	0.01	0.03	0.0108	0.0108	NCAPD2->Oncogene{Bushman},chr12:6602522-6641121:+,non-SMC_condensin_I_complex_subunit_D2,STRN->Oncogene{Bushman},chr2:37070783-37193615:-,striatin	GCIY_STOMACH	0.01	0.03	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	PARN--PPME1	1	1	PARN	5165	chr16:14720963:-	PPME1	52828	chr11:73961999:+	ONLY_REF_SPLICE	YES	92	206	0.02	0.01	0.0108	0.0108	PARN->chr16:14529558-14726585:-,poly(A)-specific_ribonuclease,PPME1->chr11:73882144-73965748:+,protein_phosphatase_methylesterase_1	GCIY_STOMACH	0.01	0.02	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	PDE12--CDK14	1	1	PDE12	3491	chr3:57545115:+	CDK14	33341	chr7:90585012:+	ONLY_REF_SPLICE	YES	52	31	0.04	0.06	0.0108	0.0108	PDE12->chr3:57542003-57552571:+,phosphodiesterase_12,CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14	GCIY_STOMACH	0.04	0.06	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	PPP1R37--CAPRIN2	1	1	PPP1R37	3132	chr19:45596785:+	CAPRIN2	19914	chr12:30906493:-	ONLY_REF_SPLICE	NO	80	19	0.02	0.1	0.0108	0.0108	PPP1R37->chr19:45594654-45651335:+,protein_phosphatase_1_regulatory_subunit_37,CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-	GCIY_STOMACH	0.02	0.1	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	PTGR1--ZNFX1	1	1	PTGR1	12153	chr9:114332371:-	ZNFX1	21524	chr20:47888287:-	ONLY_REF_SPLICE	YES	11	36	0.15	0.05	0.0108	0.0108	PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1,ZNFX1->chr20:47854483-47894963:-,zinc_finger_NFX1-type_containing_1	GCIY_STOMACH	0.05	0.15	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	PUS7--PBX3	1	1	PUS7	1216	chr7:105162499:-	PBX3	32558	chr9:128691934:+	ONLY_REF_SPLICE	YES	119	60	0.02	0.03	0.0108	0.0108	PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative),PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3	GCIY_STOMACH	0.02	0.03	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	RABGAP1L--CACYBP	1	1	RABGAP1L	13819	chr1:174247917:+	CACYBP	57005	chr1:174973750:+	ONLY_REF_SPLICE	YES	13	154	0.13	0.01	0.0108	0.0108	{Klijn_CCL:Lung=1},NEIGHBORS[3855],RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,CACYBP->calcyclin_binding_protein,chr1:174968300-174980851:+	GCIY_STOMACH	0.01	0.13	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	RP11-1L12.3--SLC5A12	1	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0108	0.0108	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	GCIY_STOMACH	0.67	1	0.0216	TRUE	3	101	0	60	0	FALSE	ACH-000047
GCIY_STOMACH	RP11-268G12.1--MID1	1	1	RP11-268G12.1	1247	chrX:27416868:-	MID1	20136	chrX:10535643:-	ONLY_REF_SPLICE	NO	2	69	0.5	0.03	0.0108	0.0108	RP11-268G12.1->chrX:27193037-27417114:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	GCIY_STOMACH	0.03	0.5	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	SGCE--CYP3A4	1	1	SGCE	6744	chr7:94252637:-	CYP3A4	20570	chr7:99377708:-	ONLY_REF_SPLICE	YES	43	0	0.04	1	0.0108	0.0108	SGCE->chr7:94214542-94285521:-,sarcoglycan_epsilon,CYP3A4->chr7:99354604-99381888:-,cytochrome_P450_family_3_subfamily_A_member_4	GCIY_STOMACH	0.04	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000047
GCIY_STOMACH	SHFM1--STIM2	1	1	SHFM1	7020	chr7:96324110:-	STIM2	30155	chr4:26921126:+	ONLY_REF_SPLICE	YES	41	22	0.05	0.08	0.0108	0.0108	SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,STIM2->chr4:26859300-27027003:+,stromal_interaction_molecule_2	GCIY_STOMACH	0.05	0.08	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	SNHG8--RBCK1	1	1	SNHG8	1429	chr4:119200292:+	RBCK1	9333	chr20:397864:+	ONLY_REF_SPLICE	YES	30	92	0.06	0.02	0.0108	0.0108	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,RBCK1->RANBP2-type_and_C3HC4-type_zinc_finger_containing_1,chr20:388142-411610:+	GCIY_STOMACH	0.02	0.06	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	TBP--THADA	1	1	TBP	6231	chr6:170876097:+	THADA	62862	chr2:43518907:-	ONLY_REF_SPLICE	NO	18	32	0.1	0.06	0.0108	0.0108	TBP->TATA-box_binding_protein,chr6:170863390-170881958:+,THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-	GCIY_STOMACH	0.06	0.1	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000047
GCIY_STOMACH	TEAD1--PARVA	1	1	TEAD1	4496	chr11:12785981:+	PARVA	32787	chr11:12495292:+	ONLY_REF_SPLICE	YES	83	63	0.02	0.03	0.0108	0.0108	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	GCIY_STOMACH	0.02	0.03	0.0216	TRUE	3	5	0	10	0	FALSE	ACH-000047
TE5_OESOPHAGUS	OXR1--ODF1	88	73	OXR1	20810	chr8:107726213:+	ODF1	34930	chr8:103572680:+	ONLY_REF_SPLICE	YES	158	1	0.5	0.99	1.0096	0.8375	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,ODF1->chr8:103563800-103573245:+,outer_dense_fiber_of_sperm_tails_1	TE5_OESOPHAGUS	0.5	0.99	1.8471	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	95	4	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	22120	11	0	0.9	1.0899	0.0459	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.9	1.1358	FALSE	230	193	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	OXR1--RIMS2	68	85	OXR1	14983	chr8:107705105:+	RIMS2	43326	chr8:104922549:+	ONLY_REF_SPLICE	YES	180	1	0.46	0.99	0.7801	0.9752	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2	TE5_OESOPHAGUS	0.46	0.99	1.7553	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	LATS2--GLRA2	60	52	LATS2	3909	chr13:21619824:-	GLRA2	19390	chrX:14548070:+	ONLY_REF_SPLICE	YES	29	0	0.79	1	0.6884	0.5966	LATS2->Oncogene{Bushman},chr13:21547171-21635686:-,large_tumor_suppressor_kinase_2,GLRA2->chrX:14547420-14749934:+,glycine_receptor_alpha_2	TE5_OESOPHAGUS	0.79	1	1.285	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	OXR1--RIMS2	40	92	OXR1	14983	chr8:107705105:+	RIMS2	43139	chr8:104922362:+	ONLY_REF_SPLICE	YES	180	1	0.42	0.99	0.4589	1.0555	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2	TE5_OESOPHAGUS	0.42	0.99	1.5144	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	55	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22356	14	0	0.81	0.631	0.0344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.81	0.6654	FALSE	230	198	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	TIMM23B--LINC00843	46	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5277	0.2753	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TE5_OESOPHAGUS	1	1	0.803	TRUE	508	994	45	981	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	37	54	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.4245	0.6195	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.97	1	1.044	FALSE	43	37	8	105	0	FALSE	ACH-000408
TE5_OESOPHAGUS	PTPN12--PHTF2	39	32	PTPN12	13163	chr7:77230123:+	PHTF2	40714	chr7:77549596:+	ONLY_REF_SPLICE	YES	316	188	0.18	0.27	0.4474	0.3671	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2	TE5_OESOPHAGUS	0.18	0.27	0.8145	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	37	26	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	34427	0	0	1	0.4245	0.2983	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.7228	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	14	91	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	5	0	0.95	1	0.1606	1.044	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.95	1	1.2046	FALSE	209	205	15	279	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	32	18	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5793	14	0.01	0.78	0.3671	0.2065	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.01	0.78	0.5736	FALSE	43	37	8	105	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	21	52	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	33396	0	0	1	0.2409	0.5966	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.8375	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-TA--MT-TC	33	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3786	0.0344	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE5_OESOPHAGUS	1	1	0.413	FALSE	462	80	0	856	0	FALSE	ACH-000408
TE5_OESOPHAGUS	OXR1--RIMS2	22	45	OXR1	14983	chr8:107705105:+	RIMS2	44535	chr8:104924281:+	ONLY_REF_SPLICE	YES	180	46	0.27	0.59	0.2524	0.5163	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2	TE5_OESOPHAGUS	0.27	0.59	0.7687	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	22	44	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	32211	140	0	0.32	0.2524	0.5048	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.32	0.7572	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	24	36	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	33497	14	0	0.81	0.2753	0.413	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.81	0.6883	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	17	64	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.195	0.7342	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	1	1	0.9292	FALSE	43	37	8	105	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	18	59	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	28305	140	0	0.35	0.2065	0.6769	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.35	0.8834	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	15	69	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	31476	0	0	1	0.1721	0.7916	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.9637	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	16	62	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	31	3	0.72	0.96	0.1836	0.7113	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0.72	0.96	0.8949	FALSE	344	821	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	16	59	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	28305	319	0	0.19	0.1836	0.6769	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.19	0.8605	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	15	57	MT-ND4	1818	chrM:11577:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	32544	0	0	1	0.1721	0.6539	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.826	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	7	88	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	2149	0	0.04	1	0.0803	1.0096	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.04	1	1.0899	FALSE	216	209	16	281	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	21	32	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	3	711	0.95	0.07	0.2409	0.3671	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.07	0.95	0.608	FALSE	43	37	8	105	0	FALSE	ACH-000408
TE5_OESOPHAGUS	C15orf57--CBX3	24	19	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	65	16	0.4	0.73	0.2753	0.218	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TE5_OESOPHAGUS	0.4	0.73	0.4933	TRUE	267	562	48	632	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	3	103	MT-ND4	1878	chrM:11637:+	MT-ND4L	5516	chrM:10607:+	INCL_NON_REF_SPLICE	YES	28846	4	0	0.96	0.0344	1.1817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0	0.96	1.2161	FALSE	344	827	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	6	89	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	67	0	0.59	1	0.0688	1.0211	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.59	1	1.0899	FALSE	213	207	15	279	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	5	93	MT-ND4	1213	chrM:10972:+	MT-ND4L	5376	chrM:10467:+	INCL_NON_REF_SPLICE	YES	225	0	0.3	1	0.0574	1.0669	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0.3	1	1.1243	FALSE	344	826	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	5	89	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	95	3	0.5	0.97	0.0574	1.0211	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0.5	0.97	1.0785	FALSE	344	826	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	3	97	MT-ND4	1477	chrM:11236:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	2693	0	0.04	1	0.0344	1.1128	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0.04	1	1.1472	FALSE	344	827	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	OXR1--ODF1	8	77	OXR1	22108	chr8:107738537:+	ODF1	34930	chr8:103572680:+	ONLY_REF_SPLICE	YES	297	1	0.22	0.99	0.0918	0.8834	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,ODF1->chr8:103563800-103573245:+,outer_dense_fiber_of_sperm_tails_1	TE5_OESOPHAGUS	0.22	0.99	0.9752	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	3	96	MT-ND4	2324	chrM:12083:+	MT-ATP8	5419	chrM:8406:+	INCL_NON_REF_SPLICE	YES	4	0	0.96	1	0.0344	1.1014	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.96	1	1.1358	FALSE	209	205	15	279	0	FALSE	ACH-000408
TE5_OESOPHAGUS	TIMM23--RP11-464F9.1	27	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3098	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TE5_OESOPHAGUS	1	1	0.3098	TRUE	519	3926	326	965	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	4	90	MT-ND4	2325	chrM:12084:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	4	0	0.96	1	0.0459	1.0325	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.96	1	1.0784	FALSE	209	205	15	279	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	4	90	MT-ND4	2328	chrM:12087:+	MT-ATP8	5444	chrM:8431:+	INCL_NON_REF_SPLICE	YES	4	0	0.96	1	0.0459	1.0325	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.96	1	1.0784	FALSE	209	205	15	279	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	12	56	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	33159	0	0	1	0.1377	0.6425	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.7802	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	3	92	MT-ND4	1245	chrM:11004:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	YES	289	3	0.25	0.97	0.0344	1.0555	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0.25	0.97	1.0899	FALSE	344	827	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	18	32	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.98	0.98	0.2065	0.3671	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE5_OESOPHAGUS	0.98	0.98	0.5736	FALSE	515	4851	409	746	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	3	91	MT-ND4	2226	chrM:11985:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	7284	0	0.01	1	0.0344	1.044	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.01	1	1.0784	FALSE	216	209	16	281	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	3	89	MT-ND4	1112	chrM:10871:+	MT-ND4L	5464	chrM:10555:+	INCL_NON_REF_SPLICE	YES	63	0	0.59	1	0.0344	1.0211	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0.59	1	1.0555	FALSE	344	826	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	8	68	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	31791	0	0	1	0.0918	0.7801	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.8719	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	8	68	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	31638	0	0	1	0.0918	0.7801	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.8719	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	ZNF654--HMGB2	25	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2868	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TE5_OESOPHAGUS	1	1	0.2868	TRUE	0	0	0	518	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	6	75	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	37	3	0.69	0.96	0.0688	0.8604	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0.69	0.96	0.9292	FALSE	344	826	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	8	66	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	32288	0	0	1	0.0918	0.7572	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.849	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	6	72	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5	14	0.94	0.85	0.0688	0.826	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.85	0.94	0.8948	FALSE	209	205	15	279	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	6	70	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	29855	0	0	1	0.0688	0.8031	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.8719	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	OR51S1--TP53I11	23	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2639	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	TE5_OESOPHAGUS	1	1	0.2639	TRUE	402	216	10	229	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	3	78	MT-ND4	1789	chrM:11548:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	17697	3	0	0.96	0.0344	0.8949	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0	0.96	0.9293	FALSE	344	827	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	13	37	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	33193	1858	0	0.03	0.1491	0.4245	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.03	0.5736	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	5	68	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	31555	0	0	1	0.0574	0.7801	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.8375	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	4	71	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	30168	0	0	1	0.0459	0.8146	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.8605	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	5	66	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8348	140	0.01	0.34	0.0574	0.7572	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.01	0.34	0.8146	FALSE	218	210	16	281	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	10	44	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	32982	0	0	1	0.1147	0.5048	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.6195	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	3	71	MT-ND4	2281	chrM:12040:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	163	189	0.31	0.28	0.0344	0.8146	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.28	0.31	0.849	FALSE	213	207	15	279	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MKRN2--TSEN2	20	2	MKRN2	1163	chr3:12598675:+	TSEN2	22924	chr3:12570387:+	ONLY_REF_SPLICE	YES	2	22	0.92	0.5	0.2295	0.0229	LOCAL_REARRANGEMENT:+:[17391],MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,TSEN2->chr3:12525931-12581122:+,tRNA_splicing_endonuclease_subunit_2	TE5_OESOPHAGUS	0.5	0.92	0.2524	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	17	13	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8813	140	0	0.18	0.195	0.1491	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.18	0.3441	FALSE	43	37	8	105	0	FALSE	ACH-000408
TE5_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	10	39	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	1	0.98	0.98	0.1147	0.4474	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE5_OESOPHAGUS	0.98	0.98	0.5621	FALSE	407	2205	196	549	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	3	66	MT-ND5	2813	chrM:14149:+	MT-ATP8	5870	chrM:8423:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0.7572	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	1	1	0.7916	FALSE	43	37	8	105	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	6	52	MT-ND4	1779	chrM:11538:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	33284	0	0	1	0.0688	0.5966	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.6654	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	3	64	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	565	3	0.11	0.96	0.0344	0.7342	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0.11	0.96	0.7686	FALSE	344	827	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	12	27	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	34115	0	0	1	0.1377	0.3098	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.4475	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	7	46	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	32982	0	0	1	0.0803	0.5277	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.608	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	C5orf24--SNX25	16	9	C5orf24	1533	chr5:134181902:+	SNX25	15735	chr4:186185592:+	ONLY_REF_SPLICE	YES	9	18	0.74	0.58	0.1836	0.1033	C5orf24->chr5:134181370-134195427:+,chromosome_5_open_reading_frame_24,SNX25->chr4:186125391-186291339:+,sorting_nexin_25	TE5_OESOPHAGUS	0.58	0.74	0.2869	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	6	49	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	32950	1	0	0.98	0.0688	0.5622	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.98	0.631	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	3	60	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	27021	140	0	0.31	0.0344	0.6884	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.31	0.7228	FALSE	231	215	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	UBR5--RP11-642D21.2	16	8	UBR5	4225	chr8:103372299:-	RP11-642D21.2	59004	chr8:106675169:-	ONLY_REF_SPLICE	YES	19	0	0.56	1	0.1836	0.0918	UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,RP11-642D21.2->chr8:106674580-106697993:-	TE5_OESOPHAGUS	0.56	1	0.2754	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	5	50	MT-ND4	1774	chrM:11533:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	33468	0	0	1	0.0574	0.5736	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.631	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	5	49	MT-ND5	2667	chrM:14003:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	NO	1994	0	0.03	1	0.0574	0.5622	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.03	1	0.6196	FALSE	43	37	8	105	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	16	4	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	26689	14	0	0.59	0.1836	0.0459	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.59	0.2295	FALSE	231	205	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	3	55	MT-ND4	1812	chrM:11571:+	MT-ATP8	5458	chrM:8445:+	INCL_NON_REF_SPLICE	YES	33026	0	0	1	0.0344	0.631	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.6654	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	6	43	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	33158	0	0	1	0.0688	0.4933	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.5621	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	10	27	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	36883	999	0	0.04	0.1147	0.3098	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.04	0.4245	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MKRN2--TSEN2	16	2	MKRN2	1163	chr3:12598675:+	TSEN2	23798	chr3:12571261:+	ONLY_REF_SPLICE	YES	2	18	0.9	0.5	0.1836	0.0229	LOCAL_REARRANGEMENT:+:[17391],MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,TSEN2->chr3:12525931-12581122:+,tRNA_splicing_endonuclease_subunit_2	TE5_OESOPHAGUS	0.5	0.9	0.2065	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	5	46	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	32332	1064	0	0.05	0.0574	0.5277	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.05	0.5851	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	11	21	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	23236	2	0	0.94	0.1262	0.2409	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0	0.94	0.3671	FALSE	328	800	43	304	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	4	46	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	32364	635	0	0.07	0.0459	0.5277	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.07	0.5736	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	PNO1--RP11-152P17.2	14	5	PNO1	4135	chr2:68389795:+	RP11-152P17.2	18039	chr8:106799824:-	ONLY_REF_SPLICE	YES	71	2	0.21	0.9	0.1606	0.0574	PNO1->chr2:68384976-68403370:+,partner_of_NOB1_homolog,RP11-152P17.2->chr8:106792474-107072752:-	TE5_OESOPHAGUS	0.21	0.9	0.218	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	14	4	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	YES	23059	0	0	1	0.1606	0.0459	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.2065	FALSE	231	204	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	5	38	MT-ND4	1783	chrM:11542:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	33455	140	0	0.23	0.0574	0.436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.23	0.4934	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	5	38	MT-ND4	1779	chrM:11538:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	33284	140	0	0.23	0.0574	0.436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.23	0.4934	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	3	45	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	33008	0	0	1	0.0344	0.5163	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.5507	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	4	40	MT-ND4	1759	chrM:11518:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	33043	1	0	0.98	0.0459	0.4589	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.98	0.5048	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	5	36	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7	140	0.85	0.23	0.0574	0.413	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.23	0.85	0.4704	FALSE	43	37	8	105	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	5	35	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	31922	2108	0	0.02	0.0574	0.4015	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.02	0.4589	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	3	42	MT-ND4	1824	chrM:11583:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	32147	14	0	0.76	0.0344	0.4818	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.76	0.5162	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	11	9	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	226	1	0.08	0.95	0.1262	0.1033	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0.08	0.95	0.2295	FALSE	344	826	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	4	37	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7	14	0.85	0.75	0.0459	0.4245	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.75	0.85	0.4704	FALSE	43	37	8	105	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	6	28	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	37201	319	0	0.1	0.0688	0.3212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.1	0.39	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND6--MT-TE	13	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1491	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE5_OESOPHAGUS	1	1	0.1491	FALSE	499	1288	110	792	0	FALSE	ACH-000408
TE5_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	3	39	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	1	0.95	0.98	0.0344	0.4474	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE5_OESOPHAGUS	0.95	0.98	0.4818	FALSE	192	492	57	212	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	5	29	MT-ND5	2394	chrM:13730:+	MT-ATP8	5872	chrM:8425:+	INCL_NON_REF_SPLICE	YES	4367	0	0.01	1	0.0574	0.3327	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.01	1	0.3901	FALSE	43	37	8	105	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ND6	10	9	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	4455	1	0	0.1147	0.1033	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	TE5_OESOPHAGUS	0	1	0.218	FALSE	26	124	4	93	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	5	28	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	34053	0	0	1	0.0574	0.3212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.3786	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	4	32	MT-ND4	1754	chrM:11513:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	32982	189	0	0.16	0.0459	0.3671	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.16	0.413	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND6--MT-TE	12	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1377	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE5_OESOPHAGUS	1	1	0.1377	FALSE	499	1288	110	792	0	FALSE	ACH-000408
TE5_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	2	39	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.0229	0.4474	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE5_OESOPHAGUS	0.98	1	0.4703	FALSE	275	511	55	178	0	FALSE	ACH-000408
TE5_OESOPHAGUS	RIMS2--LPHN3	10	6	RIMS2	24497	chr8:104987734:+	LPHN3	54014	chr4:62362839:+	ONLY_REF_SPLICE	YES	87	0	0.16	1	0.1147	0.0688	RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2,LPHN3->chr4:62066976-62944053:+	TE5_OESOPHAGUS	0.16	1	0.1835	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	3	33	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	YES	33497	1141	0	0.03	0.0344	0.3786	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.03	0.413	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	5	25	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	4531	3	0.01	0.91	0.0574	0.2868	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.01	0.91	0.3442	FALSE	43	37	8	105	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	4	28	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	34029	0	0	1	0.0459	0.3212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.3671	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND6--MT-TE	11	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1262	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE5_OESOPHAGUS	1	1	0.1262	FALSE	499	1288	110	792	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-TA--MT-TC	10	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1147	0.0459	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE5_OESOPHAGUS	1	1	0.1606	FALSE	462	80	0	856	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-TA--MT-TY	11	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1262	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	TE5_OESOPHAGUS	1	1	0.1262	FALSE	13	214	14	42	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	4	27	MT-ND4	1469	chrM:11228:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	34422	0	0	1	0.0459	0.3098	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.3557	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	10	3	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	24257	2129	0	0.01	0.1147	0.0344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.01	0.1491	FALSE	231	204	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	4	27	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	34270	0	0	1	0.0459	0.3098	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.3557	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	10	3	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	22562	189	0	0.06	0.1147	0.0344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.06	0.1491	FALSE	231	204	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	10	3	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22374	140	0	0.08	0.1147	0.0344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.08	0.1491	FALSE	230	198	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	7	15	MT-ND4	1205	chrM:10964:+	MT-ND4L	5658	chrM:10749:+	INCL_NON_REF_SPLICE	YES	218	1	0.09	0.96	0.0803	0.1721	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0.09	0.96	0.2524	FALSE	344	826	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	4	26	MT-ND4	1510	chrM:11269:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	35461	14	0	0.68	0.0459	0.2983	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.68	0.3442	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	4	26	MT-ND4	1386	chrM:11145:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	34707	0	0	1	0.0459	0.2983	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.3442	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	6	18	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	3796	2	0.01	0.92	0.0688	0.2065	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0.01	0.92	0.2753	FALSE	344	827	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	5	22	MT-ND5	2181	chrM:13517:+	MT-ATP8	5878	chrM:8431:+	INCL_NON_REF_SPLICE	YES	6443	0	0	1	0.0574	0.2524	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.3098	FALSE	43	37	8	105	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	3	29	MT-ND5	2339	chrM:13675:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	4835	0	0.01	1	0.0344	0.3327	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.01	1	0.3671	FALSE	43	37	8	105	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	3	29	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	4967	0	0.01	1	0.0344	0.3327	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.01	1	0.3671	FALSE	43	37	8	105	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	3	28	MT-ND4	1566	chrM:11325:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	36038	140	0	0.18	0.0344	0.3212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.18	0.3556	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-TA--MT-TC	9	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1033	0.0344	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE5_OESOPHAGUS	1	1	0.1377	FALSE	462	80	0	856	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	7	10	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2693	1	0.01	0.94	0.0803	0.1147	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0.01	0.94	0.195	FALSE	344	827	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	4	21	MT-ND5	2514	chrM:13850:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4870	140	0.01	0.15	0.0459	0.2409	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0.01	0.15	0.2868	FALSE	43	37	8	105	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-CO2	9	0	MT-ND5	1243	chrM:12579:+	MT-CO2	6170	chrM:7943:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1033	0	LOCAL_REARRANGEMENT:+:[4068],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE5_OESOPHAGUS	1	1	0.1033	FALSE	6	0	0	6	0	FALSE	ACH-000408
TE5_OESOPHAGUS	NRIP1--AF127936.7	9	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1033	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TE5_OESOPHAGUS	1	1	0.1033	FALSE	292	1546	117	613	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	3	23	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	5	0	0.84	1	0.0344	0.2639	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0.84	1	0.2983	FALSE	344	821	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	8	2	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11167	0	0	1	0.0918	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.1147	FALSE	230	193	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND6--MT-TE	8	1	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.0918	0.0115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE5_OESOPHAGUS	0.69	1	0.1033	FALSE	499	1288	110	792	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MIR205HG--C9orf3	7	4	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	188	286	0.06	0.04	0.0803	0.0459	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	TE5_OESOPHAGUS	0.04	0.06	0.1262	TRUE	86	303	14	25	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	4	16	MT-ND5	2356	chrM:13692:+	MT-ATP8	5933	chrM:8486:+	INCL_NON_REF_SPLICE	NO	4566	1063	0	0.02	0.0459	0.1836	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.02	0.2295	FALSE	43	37	8	105	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MUC20--MT-CO3	7	4	MUC20	5081	chr3:195452658:+	MT-CO3	18446	chrM:9566:+	INCL_NON_REF_SPLICE	YES	722	29591	0.02	0	0.0803	0.0459	MUC20->chr3:195447753-195467994:+,mucin_20,_cell_surface_associated,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TE5_OESOPHAGUS	0	0.02	0.1262	FALSE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	5	11	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	31227	1858	0	0.01	0.0574	0.1262	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.01	0.1836	FALSE	231	205	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	C15orf57--CBX3	4	14	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	65	16	0.22	0.53	0.0459	0.1606	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TE5_OESOPHAGUS	0.22	0.53	0.2065	TRUE	267	562	48	632	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	7	2	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	10332	0	0	1	0.0803	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.1032	FALSE	230	193	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	7	2	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	12062	712	0	0.01	0.0803	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.01	0.1032	FALSE	230	193	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	LPHN3--SDAD1	6	5	LPHN3	8045	chr4:62453158:+	SDAD1	48392	chr4:76903190:-	ONLY_REF_SPLICE	YES	6	51	0.65	0.18	0.0688	0.0574	LPHN3->chr4:62066976-62944053:+,SDAD1->SDA1_domain_containing_1,chr4:76862103-76912115:-	TE5_OESOPHAGUS	0.18	0.65	0.1262	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	3	17	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	34707	712	0	0.03	0.0344	0.195	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.03	0.2294	FALSE	231	217	16	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	3	16	MT-ND4	1201	chrM:10960:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	208	2	0.08	0.9	0.0344	0.1836	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0.08	0.9	0.218	FALSE	344	826	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MUC20--MT-CO3	7	0	MUC20	4625	chr3:195452202:+	MT-CO3	18446	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0	MUC20->chr3:195447753-195467994:+,mucin_20,_cell_surface_associated,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TE5_OESOPHAGUS	1	1	0.0803	FALSE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MUC20--MT-CO3	7	0	MUC20	4796	chr3:195452373:+	MT-CO3	18446	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0	MUC20->chr3:195447753-195467994:+,mucin_20,_cell_surface_associated,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TE5_OESOPHAGUS	1	1	0.0803	FALSE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MUC20--MT-CO3	7	0	MUC20	4682	chr3:195452259:+	MT-CO3	18446	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0	MUC20->chr3:195447753-195467994:+,mucin_20,_cell_surface_associated,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TE5_OESOPHAGUS	1	1	0.0803	FALSE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MUC20--MT-CO3	7	0	MUC20	4853	chr3:195452430:+	MT-CO3	18446	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0	MUC20->chr3:195447753-195467994:+,mucin_20,_cell_surface_associated,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TE5_OESOPHAGUS	1	1	0.0803	FALSE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MUC20--MT-CO3	7	0	MUC20	4739	chr3:195452316:+	MT-CO3	18446	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0	MUC20->chr3:195447753-195467994:+,mucin_20,_cell_surface_associated,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TE5_OESOPHAGUS	1	1	0.0803	FALSE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MUC20--MT-CO3	7	0	MUC20	4910	chr3:195452487:+	MT-CO3	18446	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0	MUC20->chr3:195447753-195467994:+,mucin_20,_cell_surface_associated,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TE5_OESOPHAGUS	1	1	0.0803	FALSE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MUC20--MT-CO3	7	0	MUC20	4568	chr3:195452145:+	MT-CO3	18446	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0	MUC20->chr3:195447753-195467994:+,mucin_20,_cell_surface_associated,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TE5_OESOPHAGUS	1	1	0.0803	FALSE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	6	3	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22057	14	0	0.39	0.0688	0.0344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.39	0.1032	FALSE	230	193	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ND6	4	11	MT-ND5	2769	chrM:14105:+	MT-ND6	5868	chrM:14618:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0.1262	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	TE5_OESOPHAGUS	1	1	0.1721	FALSE	26	124	4	93	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	4	10	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	433	1	0.03	0.93	0.0459	0.1147	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0.03	0.93	0.1606	FALSE	344	827	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	4	10	MT-ND5	1969	chrM:13305:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	7941	711	0	0.02	0.0459	0.1147	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.02	0.1606	FALSE	43	37	8	105	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	4	9	MT-ND5	1628	chrM:12964:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	7107	0	0	1	0.0459	0.1033	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.1492	FALSE	42	36	7	104	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ND6	3	12	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0.1377	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	TE5_OESOPHAGUS	1	1	0.1721	FALSE	26	124	4	93	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-TA--MT-TY	6	0	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0688	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	TE5_OESOPHAGUS	1	1	0.0688	FALSE	13	214	14	42	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MUC20--MT-CO3	6	0	MUC20	4511	chr3:195452088:+	MT-CO3	18446	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0688	0	MUC20->chr3:195447753-195467994:+,mucin_20,_cell_surface_associated,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TE5_OESOPHAGUS	1	1	0.0688	FALSE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	5	3	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	23380	635	0	0.01	0.0574	0.0344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.01	0.0918	FALSE	231	204	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	5	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22120	14	0	0.36	0.0574	0.0344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.36	0.0918	FALSE	230	193	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	4	7	MT-ND5	1648	chrM:12984:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6652	140	0	0.07	0.0459	0.0803	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.07	0.1262	FALSE	42	36	7	104	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MAD1L1--AC110781.3	5	2	MAD1L1	35008	chr7:1937836:-	AC110781.3	43154	chr7:1878343:+	INCL_NON_REF_SPLICE	YES	21	0	0.25	1	0.0574	0.0229	NEIGHBORS_OVERLAP:-:+:[11345],MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,AC110781.3->chr7:1878222-1889567:+	TE5_OESOPHAGUS	0.25	1	0.0803	FALSE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	4	6	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	1	3	0.91	0.77	0.0459	0.0688	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0.77	0.91	0.1147	FALSE	344	821	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	5	1	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	2467	3	0	0.67	0.0574	0.0115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.67	0.0689	FALSE	230	191	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	3	9	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	29356	140	0	0.08	0.0344	0.1033	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.08	0.1377	FALSE	231	205	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	SLC25A40--AC004862.6	4	5	SLC25A40	9255	chr7:87476264:-	AC004862.6	20437	chr7:80013440:-	ONLY_REF_SPLICE	YES	181	0	0.05	1	0.0459	0.0574	SLC25A40->chr7:87462883-87505672:-,solute_carrier_family_25_member_40,AC004862.6->chr7:79959508-80014295:-	TE5_OESOPHAGUS	0.05	1	0.1033	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	4	4	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	NO	22120	0	0	1	0.0459	0.0459	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.0918	FALSE	230	193	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-TA--MT-TC	4	4	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0.0459	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE5_OESOPHAGUS	1	1	0.0918	FALSE	462	80	0	856	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	4	3	MT-ND4	1244	chrM:11003:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	23329	999	0	0.01	0.0459	0.0344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.01	0.0803	FALSE	231	204	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	4	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	22356	140	0	0.05	0.0459	0.0344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.05	0.0803	FALSE	230	198	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	4	2	MT-ND4	1104	chrM:10863:+	MT-ATP8	5444	chrM:8431:+	INCL_NON_REF_SPLICE	NO	9978	0	0	1	0.0459	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	1	0.0688	FALSE	230	193	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	SLC25A40--AC004862.6	2	9	SLC25A40	12001	chr7:87470948:-	AC004862.6	20437	chr7:80013440:-	ONLY_REF_SPLICE	YES	224	0	0.05	1	0.0229	0.1033	SLC25A40->chr7:87462883-87505672:-,solute_carrier_family_25_member_40,AC004862.6->chr7:79959508-80014295:-	TE5_OESOPHAGUS	0.05	1	0.1262	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	1	1	0.0459	FALSE	344	821	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND6--MT-TE	3	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0344	0.0459	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE5_OESOPHAGUS	0.88	1	0.0803	FALSE	499	1288	110	792	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-TA--MT-TY	4	0	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	TE5_OESOPHAGUS	1	1	0.0459	FALSE	13	214	14	42	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MUC20--MT-CO3	4	0	MUC20	5024	chr3:195452601:+	MT-CO3	18446	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	MUC20->chr3:195447753-195467994:+,mucin_20,_cell_surface_associated,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TE5_OESOPHAGUS	1	1	0.0459	FALSE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	CMSS1--FILIP1L	3	3	CMSS1	1210	chr3:99536887:+	FILIP1L	34505	chr3:99569914:-	ONLY_REF_SPLICE	YES	113	1	0.05	0.86	0.0344	0.0344	CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast),FILIP1L->chr3:99548985-99833357:-,filamin_A_interacting_protein_1-like	TE5_OESOPHAGUS	0.05	0.86	0.0688	TRUE	0	1	0	1	1	TRUE	ACH-000408
TE5_OESOPHAGUS	JUP--MT-CO3	3	3	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	1099	29592	0.01	0	0.0344	0.0344	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TE5_OESOPHAGUS	0	0.01	0.0688	FALSE	0	0	0	33	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	3	3	MT-ND4	1213	chrM:10972:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	NO	22374	319	0	0.02	0.0344	0.0344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.02	0.0688	FALSE	230	198	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	3	3	MT-ND4	1188	chrM:10947:+	MT-ATP8	5526	chrM:8513:+	INCL_NON_REF_SPLICE	YES	19623	2134	0	0	0.0344	0.0344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0	0.0688	FALSE	230	193	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	3	3	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	26198	2043	0	0	0.0344	0.0344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0	0.0688	FALSE	231	205	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	3	2	MT-ND4	1081	chrM:10840:+	MT-ATP8	5476	chrM:8463:+	INCL_NON_REF_SPLICE	YES	7475	7	0	0.42	0.0344	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.42	0.0573	FALSE	230	193	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	3	2	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	488	0	0.01	1	0.0344	0.0229	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	0.01	1	0.0573	FALSE	344	827	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND6--MT-TE	3	2	MT-ND6	1053	chrM:14621:-	MT-TE	4526	chrM:14742:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0344	0.0229	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE5_OESOPHAGUS	0.83	1	0.0573	FALSE	499	1288	110	792	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND6--MT-TE	3	2	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	5	0	0.5	1	0.0344	0.0229	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE5_OESOPHAGUS	0.5	1	0.0573	FALSE	499	1288	110	792	0	FALSE	ACH-000408
TE5_OESOPHAGUS	C5orf24--SNX25	1	9	C5orf24	2184	chr5:134182553:+	SNX25	15735	chr4:186185592:+	ONLY_REF_SPLICE	YES	8	18	0.56	0.36	0.0115	0.1033	C5orf24->chr5:134181370-134195427:+,chromosome_5_open_reading_frame_24,SNX25->chr4:186125391-186291339:+,sorting_nexin_25	TE5_OESOPHAGUS	0.36	0.56	0.1148	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ATP8	3	1	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	23179	605	0	0.01	0.0344	0.0115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	0	0.01	0.0459	FALSE	231	204	14	283	0	FALSE	ACH-000408
TE5_OESOPHAGUS	PFKP--RP11-167H9.5	3	1	PFKP	12491	chr10:3149501:+	RP11-167H9.5	33977	chr3:149936162:-	ONLY_REF_SPLICE	YES	168	0	0.02	1	0.0344	0.0115	PFKP->chr10:3108525-3179904:+,phosphofructokinase,_platelet,RP11-167H9.5->chr3:149919961-149942977:-	TE5_OESOPHAGUS	0.02	1	0.0459	TRUE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	GPHN--FAM71D	2	4	GPHN	12919	chr14:67382786:+	FAM71D	41199	chr14:67664853:+	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.0229	0.0459	NEIGHBORS[7590],GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,FAM71D->chr14:67656110-67695267:+,family_with_sequence_similarity_71_member_D	TE5_OESOPHAGUS	0.3	1	0.0688	FALSE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	1	1	0.0344	FALSE	344	821	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	1	1	0.0344	FALSE	344	821	44	306	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-ND5--MT-ATP8	3	0	MT-ND5	1631	chrM:12967:+	MT-ATP8	6006	chrM:8559:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE5_OESOPHAGUS	1	1	0.0344	FALSE	42	36	7	104	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE5_OESOPHAGUS	1	1	0.0344	FALSE	462	80	0	856	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MUC20--MT-CO3	3	0	MUC20	4956	chr3:195452533:+	MT-CO3	18436	chrM:9556:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	MUC20->chr3:195447753-195467994:+,mucin_20,_cell_surface_associated,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TE5_OESOPHAGUS	1	1	0.0344	FALSE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	PTPN12--PHTF2	1	8	PTPN12	10835	chr7:77221573:+	PHTF2	40714	chr7:77549596:+	ONLY_REF_SPLICE	YES	307	188	0.03	0.05	0.0115	0.0918	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2	TE5_OESOPHAGUS	0.03	0.05	0.1033	TRUE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	RP11-123O10.4--GRIP1	3	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0344	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TE5_OESOPHAGUS	1	1	0.0344	FALSE	416	2512	207	587	0	FALSE	ACH-000408
TE5_OESOPHAGUS	SYT8--RBMX	3	0	SYT8	8250	chr11:1858226:+	RBMX	14426	chrX:135960130:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	SYT8->chr11:1848709-1858751:+,synaptotagmin_8,RBMX->RNA_binding_motif_protein,_X-linked,chrX:135930163-135962923:-	TE5_OESOPHAGUS	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	ZSWIM8--MT-ND4L	3	0	ZSWIM8	12235	chr10:75557564:+	MT-ND4L	19223	chrM:10470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	ZSWIM8->chr10:75545340-75561551:+,zinc_finger_SWIM-type_containing_8,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	1	1	0.0344	FALSE	0	0	0	3	0	FALSE	ACH-000408
TE5_OESOPHAGUS	ZSWIM8--MT-ND4L	3	0	ZSWIM8	12247	chr10:75557576:+	MT-ND4L	19235	chrM:10482:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	ZSWIM8->chr10:75545340-75561551:+,zinc_finger_SWIM-type_containing_8,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE5_OESOPHAGUS	1	1	0.0344	FALSE	0	0	0	3	0	FALSE	ACH-000408
TE5_OESOPHAGUS	AC002066.1--AC073130.1	2	2	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	6	0	0.4	1	0.0229	0.0229	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	TE5_OESOPHAGUS	0.4	1	0.0458	FALSE	0	3	0	33	0	FALSE	ACH-000408
TE5_OESOPHAGUS	RP11-680G10.1--GSE1	2	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	13	1	0.24	0.0229	0.0229	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TE5_OESOPHAGUS	0.24	1	0.0458	TRUE	465	1949	224	605	0	FALSE	ACH-000408
TE5_OESOPHAGUS	DPH6-AS1--RP11-684B21.1	2	1	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0229	0.0115	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	TE5_OESOPHAGUS	0.6	1	0.0344	TRUE	17	119	17	33	0	FALSE	ACH-000408
TE5_OESOPHAGUS	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0229	0.0115	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TE5_OESOPHAGUS	0.43	1	0.0344	FALSE	125	705	46	456	0	FALSE	ACH-000408
TE5_OESOPHAGUS	BOK--TYSND1	2	0	BOK	1273	chr2:242498408:+	TYSND1	15121	chr10:71899897:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	BOK->BCL2-related_ovarian_killer,Oncogene{Bushman},chr2:242498136-242513546:+,TYSND1->chr10:71897737-71906432:-,trypsin_domain_containing_1	TE5_OESOPHAGUS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	CDK19--TAF4	2	0	CDK19	1151	chr6:111137011:-	TAF4	45984	chr20:60551391:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	CDK19->chr6:110931181-111137161:-,cyclin-dependent_kinase_19,TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-	TE5_OESOPHAGUS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	CHP1--BCAP29	2	0	CHP1	3780	chr15:41535937:+	BCAP29	24853	chr7:107253777:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	CHP1->calcineurin_like_EF-hand_protein_1,chr15:41523037-41574043:+,BCAP29->B-cell_receptor-associated_protein_29,chr7:107220422-107269615:+	TE5_OESOPHAGUS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	MTFR1--NR2F1-AS1	2	0	MTFR1	2199	chr8:66582253:+	NR2F1-AS1	26247	chr5:92905708:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	MTFR1->chr8:66556969-66683496:+,mitochondrial_fission_regulator_1,NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-	TE5_OESOPHAGUS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	NR2F2--TGIF1	2	0	NR2F2	1415	chr15:96869581:+	TGIF1	25337	chr18:3456352:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	NR2F2->chr15:96869167-96883492:+,nuclear_receptor_subfamily_2_group_F_member_2,TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+	TE5_OESOPHAGUS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	PKP4--TANK	2	0	PKP4	8477	chr2:159459616:+	TANK	40201	chr2:162036125:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	PKP4->chr2:159313476-159539391:+,plakophilin_4,TANK->TRAF_family_member_associated_NFKB_activator,chr2:161993419-162092732:+	TE5_OESOPHAGUS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	PROSC--SRSF1	2	0	PROSC	2996	chr8:37623873:+	SRSF1	14701	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Breast=[count:2=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=3,Brain_-_Hippocampus=1,Thyroid=1,Adipose_-_Subcutaneous=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	TE5_OESOPHAGUS	1	1	0.0229	TRUE	6	2	0	9	0	FALSE	ACH-000408
TE5_OESOPHAGUS	RHBDL2--FAF1	2	0	RHBDL2	1118	chr1:39407354:-	FAF1	27634	chr1:51061888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	RHBDL2->chr1:39351479-39407471:-,rhomboid,_veinlet-like_2_(Drosophila),FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	TE5_OESOPHAGUS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	AC002066.1--AC073130.1	1	2	AC002066.1	1112	chr7:116139408:-	AC073130.1	12073	chr7:115926249:-	ONLY_REF_SPLICE	YES	6	0	0.33	1	0.0115	0.0229	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	TE5_OESOPHAGUS	0.33	1	0.0344	FALSE	0	0	0	2	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MAD1L1--AC110781.3	1	2	MAD1L1	35008	chr7:1937836:-	AC110781.3	46264	chr7:1886884:+	ONLY_REF_SPLICE	YES	21	2	0.12	0.6	0.0115	0.0229	NEIGHBORS_OVERLAP:-:+:[11345],MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,AC110781.3->chr7:1878222-1889567:+	TE5_OESOPHAGUS	0.12	0.6	0.0344	FALSE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	NCOR2--UBC	1	2	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	96	172	0.03	0.02	0.0115	0.0229	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	TE5_OESOPHAGUS	0.02	0.03	0.0344	TRUE	52	148	13	33	0	FALSE	ACH-000408
TE5_OESOPHAGUS	RP11-385J1.2--GPR115	1	2	RP11-385J1.2	1917	chr3:178577277:-	GPR115	17016	chr6:47661408:+	ONLY_REF_SPLICE	YES	51	0	0.06	1	0.0115	0.0229	RP11-385J1.2->chr3:178244293-178578193:-,GPR115->chr6:47653600-47689757:+	TE5_OESOPHAGUS	0.06	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000408
TE5_OESOPHAGUS	BAIAP2--UBC	1	1	BAIAP2	1161	chr17:79009108:+	UBC	34683	chr12:125398320:-	ONLY_REF_SPLICE	YES	215	172	0.01	0.01	0.0115	0.0115	BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	TE5_OESOPHAGUS	0.01	0.01	0.023	FALSE	0	1	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	MIR205HG--HOXC5	1	1	MIR205HG	4006	chr1:209605170:+	HOXC5	9445	chr12:54428062:+	ONLY_REF_SPLICE	YES	188	0	0.01	1	0.0115	0.0115	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,HOXC5->chr12:54426637-54429142:+,homeobox_C5	TE5_OESOPHAGUS	0.01	1	0.023	FALSE	0	6	0	2	1	FALSE	ACH-000408
TE5_OESOPHAGUS	NDUFA4--PHF14	1	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	937	54	0	0.04	0.0115	0.0115	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	TE5_OESOPHAGUS	0	0.04	0.023	FALSE	19	32	3	60	0	FALSE	ACH-000408
TE5_OESOPHAGUS	NR2F2--GNAS	1	1	NR2F2	1415	chr15:96869581:+	GNAS	29055	chr20:57470667:+	ONLY_REF_SPLICE	YES	100	1202	0.02	0	0.0115	0.0115	NR2F2->chr15:96869167-96883492:+,nuclear_receptor_subfamily_2_group_F_member_2,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TE5_OESOPHAGUS	0	0.02	0.023	FALSE	0	1	0	3	0	FALSE	ACH-000408
TE5_OESOPHAGUS	OLR1--TMEM52B	1	1	OLR1	1137	chr12:10324601:-	TMEM52B	13202	chr12:10324878:+	ONLY_REF_SPLICE	NO	384	275	0.01	0.01	0.0115	0.0115	NEIGHBORS_OVERLAP:-:+:[1596],OLR1->chr12:10310902-10324737:-,oxidized_low_density_lipoprotein_receptor_1,TMEM52B->chr12:10323141-10344400:+,transmembrane_protein_52B	TE5_OESOPHAGUS	0.01	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	RAB40C--TMEM8A	1	1	RAB40C	2077	chr16:640433:+	TMEM8A	17482	chr16:427848:-	ONLY_REF_SPLICE	YES	59	11	0.03	0.15	0.0115	0.0115	GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5]},GTEx_v2:{count=3;pct=0.03%;dist=Pancreas=1,Lung=1,Brain_-_Cerebellum=1},RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+,TMEM8A->chr16:420773-437113:-,transmembrane_protein_8A	TE5_OESOPHAGUS	0.03	0.15	0.023	TRUE	6	8	0	5	0	FALSE	ACH-000408
TE5_OESOPHAGUS	SKA2--C9orf3	1	1	SKA2	1314	chr17:57232317:-	C9orf3	48941	chr9:97848964:+	ONLY_REF_SPLICE	YES	68	286	0.03	0.01	0.0115	0.0115	SKA2->chr17:57187312-57232630:-,spindle_and_kinetochore_associated_complex_subunit_2,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	TE5_OESOPHAGUS	0.01	0.03	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000408
TE5_OESOPHAGUS	TULP4--RP11-732M18.3	1	1	TULP4	2609	chr6:158735300:+	RP11-732M18.3	28124	chr6:158703295:+	ONLY_REF_SPLICE	NO	10	0	0.17	1	0.0115	0.0115	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	TE5_OESOPHAGUS	0.17	1	0.023	TRUE	121	131	5	12	0	FALSE	ACH-000408
SKLMS1_SOFT_TISSUE	ACACA--NPLOC4	81	30	ACACA	13908	chr17:35687113:-	NPLOC4	97252	chr17:79539114:-	ONLY_REF_SPLICE	YES	39	86	0.74	0.56	1.0385	0.3846	ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-	SKLMS1_SOFT_TISSUE	0.56	0.74	1.4231	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	RP11-124N14.3--MAPRE1	87	0	RP11-124N14.3	2020	chr10:17275813:-	MAPRE1	7791	chr20:31421544:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1154	0	RP11-124N14.3->chr10:17275324-17276832:-,MAPRE1->Oncogene{Bushman},chr20:31407699-31438211:+,microtubule_associated_protein_RP/EB_family_member_1	SKLMS1_SOFT_TISSUE	1	1	1.1154	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	IGF1R--PLIN1	68	20	IGF1R	32981	chr15:99501534:+	PLIN1	51838	chr15:90208481:-	INCL_NON_REF_SPLICE	YES	6	0	0.94	1	0.8718	0.2564	IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor,PLIN1->chr15:90207596-90222658:-,perilipin_1	SKLMS1_SOFT_TISSUE	0.94	1	1.1282	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	TIMM23B--LINC00843	62	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7949	0.2051	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKLMS1_SOFT_TISSUE	1	1	1	TRUE	508	994	45	981	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	TIMM23--RP11-464F9.1	36	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	171	4	0.18	0.9	0.4616	0.0128	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKLMS1_SOFT_TISSUE	0.18	0.9	0.4744	TRUE	519	3926	326	965	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	STAG1--ARMC8	28	4	STAG1	1184	chr3:136471037:-	ARMC8	64101	chr3:137991809:+	ONLY_REF_SPLICE	YES	79	34	0.29	0.48	0.359	0.0513	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,ARMC8->armadillo_repeat_containing_8,chr3:137906109-138017231:+	SKLMS1_SOFT_TISSUE	0.29	0.48	0.4103	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	CPEB1--IGF1R	23	16	CPEB1	18056	chr15:83224620:-	IGF1R	37619	chr15:99434554:+	ONLY_REF_SPLICE	YES	3	29	0.93	0.57	0.2949	0.2051	CPEB1->chr15:83211951-83317612:-,cytoplasmic_polyadenylation_element_binding_protein_1,IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor	SKLMS1_SOFT_TISSUE	0.57	0.93	0.5	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	18	20	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	8	1	0.83	0.97	0.2308	0.2564	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKLMS1_SOFT_TISSUE	0.83	0.97	0.4872	FALSE	407	2205	196	549	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	C15orf57--CBX3	16	20	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	39	22	0.48	0.62	0.2051	0.2564	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKLMS1_SOFT_TISSUE	0.48	0.62	0.4615	TRUE	267	562	48	632	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	15	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	8	3	0.76	0.89	0.1923	0.1282	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKLMS1_SOFT_TISSUE	0.76	0.89	0.3205	FALSE	515	4851	409	746	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	TYW1B--YEATS2	16	5	TYW1B	6969	chr7:72267415:-	YEATS2	37782	chr3:183490093:+	ONLY_REF_SPLICE	YES	15	35	0.58	0.38	0.2051	0.0641	TYW1B->chr7:72023729-72298777:-,tRNA-yW_synthesizing_protein_1_homolog_B,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+	SKLMS1_SOFT_TISSUE	0.38	0.58	0.2692	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	RYK--KCNMB3	15	3	RYK	6979	chr3:133921574:-	KCNMB3	31441	chr3:178968722:-	ONLY_REF_SPLICE	YES	87	6	0.17	0.75	0.1923	0.0385	RYK->chr3:133784147-133969689:-,receptor-like_tyrosine_kinase,KCNMB3->chr3:178957530-178984790:-,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_3	SKLMS1_SOFT_TISSUE	0.17	0.75	0.2308	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	RP11-680G10.1--GSE1	14	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	19	1	0.46	0.1795	0.0256	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKLMS1_SOFT_TISSUE	0.46	1	0.2051	TRUE	465	1949	224	605	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	HSP90AB1--MT-RNR2	14	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1795	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLMS1_SOFT_TISSUE	1	1	0.1795	FALSE	13	9	0	364	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	NCBP1--TMOD1	14	0	NCBP1	1290	chr9:100396197:+	TMOD1	29767	chr9:100286423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1795	0	NUCLCLUST,LOCAL_REARRANGEMENT:+:[31878],NCBP1->chr9:100395908-100436030:+,nuclear_cap_binding_protein_subunit_1,TMOD1->chr9:100263462-100364030:+,tropomodulin_1	SKLMS1_SOFT_TISSUE	1	1	0.1795	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	PTPRK--THEMIS	12	8	PTPRK	21019	chr6:128403582:-	THEMIS	55652	chr6:128176333:-	ONLY_REF_SPLICE	YES	130	0	0.13	1	0.1539	0.1026	{Klijn_CCL:Lung=1},NEIGHBORS[50148],PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,THEMIS->chr6:128029217-128239776:-,thymocyte_selection_associated	SKLMS1_SOFT_TISSUE	0.13	1	0.2565	FALSE	0	0	0	1	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	CPEB1--IGF1R	11	10	CPEB1	14939	chr15:83240094:-	IGF1R	37619	chr15:99434554:+	ONLY_REF_SPLICE	YES	25	29	0.46	0.42	0.141	0.1282	CPEB1->chr15:83211951-83317612:-,cytoplasmic_polyadenylation_element_binding_protein_1,IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor	SKLMS1_SOFT_TISSUE	0.42	0.46	0.2692	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	RALA--YAE1D1	11	6	RALA	1343	chr7:39663424:+	YAE1D1	18284	chr7:39649216:+	ONLY_REF_SPLICE	YES	236	2	0.07	0.89	0.141	0.0769	LOCAL_REARRANGEMENT:+:[13163],RALA->Oncogene{Bushman},chr7:39663082-39747723:+,v-ral_simian_leukemia_viral_oncogene_homolog_A_(ras_related),YAE1D1->Yae1_domain_containing_1,chr7:39605975-39649919:+	SKLMS1_SOFT_TISSUE	0.07	0.89	0.2179	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	MT-ND6--MT-TE	12	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1539	0.0128	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKLMS1_SOFT_TISSUE	1	1	0.1667	FALSE	499	1288	110	792	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	RP11-680G10.1--GSE1	11	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	8	1	0.67	0.141	0.0641	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKLMS1_SOFT_TISSUE	0.67	1	0.2051	TRUE	458	1351	185	561	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	C15orf57--CBX3	8	15	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	39	23	0.37	0.5	0.1026	0.1923	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKLMS1_SOFT_TISSUE	0.37	0.5	0.2949	TRUE	267	562	48	632	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	5	23	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	1	0.97	0.97	0.0641	0.2949	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKLMS1_SOFT_TISSUE	0.97	0.97	0.359	FALSE	192	492	57	212	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	MT-CO3--MT-ATP6	6	17	MT-CO3	1107	chrM:9313:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	NO	0	2	1	0.92	0.0769	0.218	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKLMS1_SOFT_TISSUE	0.92	1	0.2949	FALSE	189	492	56	216	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	PRR16--CTD-2334D19.1	9	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	69	0	0.17	1	0.1154	0.0641	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKLMS1_SOFT_TISSUE	0.17	1	0.1795	FALSE	56	216	12	147	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	MT-ND6--MT-TE	9	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1154	0.0513	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKLMS1_SOFT_TISSUE	1	1	0.1667	FALSE	499	1288	110	792	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	7	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	3	0.95	0.86	0.0897	0.1539	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKLMS1_SOFT_TISSUE	0.86	0.95	0.2436	FALSE	467	2173	244	435	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	CTD-2337A12.1--CAST	8	4	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	75	1	0.14	0.1026	0.0513	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SKLMS1_SOFT_TISSUE	0.14	1	0.1539	TRUE	347	1186	183	220	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	ZMYND8--RP1-148H17.1	8	3	ZMYND8	6534	chr20:45976600:-	RP1-148H17.1	40103	chr20:46026089:-	ONLY_REF_SPLICE	YES	27	0	0.29	1	0.1026	0.0385	LOCAL_REARRANGEMENT:-:[35106],ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,RP1-148H17.1->chr20:46020673-46041071:-	SKLMS1_SOFT_TISSUE	0.29	1	0.1411	TRUE	0	9	0	1	9	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	RPS17L--TICRR	7	6	RPS17L	3259	chr15:83207057:-	TICRR	9572	chr15:90125917:+	ONLY_REF_SPLICE	YES	687	19	0.02	0.41	0.0897	0.0769	RPS17L->chr15:83205504-83209315:-,TICRR->TOPBP1_interacting_checkpoint_and_replication_regulator,chr15:90118713-90174287:+	SKLMS1_SOFT_TISSUE	0.02	0.41	0.1666	TRUE	0	0	0	1	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	3	20	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	8	0	0.74	1	0.0385	0.2564	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKLMS1_SOFT_TISSUE	0.74	1	0.2949	FALSE	275	511	55	178	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	MT-ND6--MT-TE	7	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0897	0.0385	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKLMS1_SOFT_TISSUE	1	1	0.1282	FALSE	499	1288	110	792	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	AC009961.3--WDSUB1	6	5	AC009961.3	2693	chr2:160567228:-	WDSUB1	19696	chr2:160105023:-	ONLY_REF_SPLICE	YES	1	15	0.92	0.42	0.0769	0.0641	AC009961.3->chr2:160527219-160568946:-,WDSUB1->WD_repeat,_sterile_alpha_motif_and_U-box_domain_containing_1,chr2:160092304-160143310:-	SKLMS1_SOFT_TISSUE	0.42	0.92	0.141	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	NR3C2--RP11-8L2.1	6	2	NR3C2	5293	chr4:149356256:-	RP11-8L2.1	36015	chr4:84717769:-	ONLY_REF_SPLICE	YES	20	0	0.29	1	0.0769	0.0256	NR3C2->Oncogene{Bushman},chr4:148999913-149365850:-,nuclear_receptor_subfamily_3_group_C_member_2,RP11-8L2.1->chr4:84717589-85214565:-	SKLMS1_SOFT_TISSUE	0.29	1	0.1025	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	RFFL--TRPC3	5	5	RFFL	7733	chr17:33353393:-	TRPC3	26355	chr4:122854197:-	ONLY_REF_SPLICE	YES	29	1	0.26	0.91	0.0641	0.0641	RFFL->chr17:33333009-33416338:-,ring_finger_and_FYVE-like_domain_containing_E3_ubiquitin_protein_ligase,TRPC3->chr4:122800182-122872909:-,transient_receptor_potential_cation_channel_subfamily_C_member_3	SKLMS1_SOFT_TISSUE	0.26	0.91	0.1282	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	MT-ND6--MT-TE	3	12	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0.1539	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKLMS1_SOFT_TISSUE	1	1	0.1924	FALSE	499	1288	110	792	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	NCK1--ZIC4	5	1	NCK1	4708	chr3:136647069:+	ZIC4	18321	chr3:147120599:-	ONLY_REF_SPLICE	YES	108	0	0.05	1	0.0641	0.0128	NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,ZIC4->Zic_family_member_4,chr3:147103833-147124647:-	SKLMS1_SOFT_TISSUE	0.05	1	0.0769	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	VIM-AS1--OAZ1	3	9	VIM-AS1	1577	chr10:17271408:-	OAZ1	9834	chr19:2269524:+	INCL_NON_REF_SPLICE	YES	6409	0	0	1	0.0385	0.1154	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1	SKLMS1_SOFT_TISSUE	0	1	0.1539	TRUE	0	0	0	2	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	CHSY3--HSPA8P4	5	0	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	SKLMS1_SOFT_TISSUE	1	1	0.0641	FALSE	89	26	1	44	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	JSRP1--VIM	3	8	JSRP1	1231	chr19:2269528:-	VIM	11553	chr10:17271404:+	INCL_NON_REF_SPLICE	YES	1	5393	0.92	0	0.0385	0.1026	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,VIM->chr10:17270258-17279592:+,vimentin	SKLMS1_SOFT_TISSUE	0	0.92	0.1411	TRUE	0	0	0	3	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	NSF--ARL17A	5	0	NSF	1119	chr17:44668153:+	ARL17A	39272	chr17:44594599:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0641	0	LOCAL_INVERSION:+:-:[10947],NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,ARL17A->ADP_ribosylation_factor_like_GTPase_17A,chr17:44594068-44657088:-	SKLMS1_SOFT_TISSUE	1	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	RP11-466L17.1--RP11-90C4.1	5	0	RP11-466L17.1	2240	chr1:56080675:+	RP11-90C4.1	11159	chr1:56297937:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0641	0	NEIGHBORS[88805],RP11-466L17.1->chr1:56046710-56200675:+,RP11-90C4.1->chr1:56289480-56333921:+	SKLMS1_SOFT_TISSUE	1	1	0.0641	FALSE	351	187	22	6	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	CBX1--BAIAP2	4	3	CBX1	5435	chr17:46154227:-	BAIAP2	29584	chr17:79073728:+	ONLY_REF_SPLICE	YES	329	21	0.02	0.25	0.0513	0.0385	CBX1->chr17:46147414-46178883:-,chromobox_1,BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+	SKLMS1_SOFT_TISSUE	0.02	0.25	0.0898	TRUE	0	0	0	1	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	RP11-123O10.4--GRIP1	4	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0513	0.0256	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKLMS1_SOFT_TISSUE	1	1	0.0769	FALSE	416	2512	207	587	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	JSRP1--RPS28	4	1	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0513	0.0128	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SKLMS1_SOFT_TISSUE	0.83	1	0.0641	TRUE	0	1	0	84	1	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	JSRP1--RPS28	4	1	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0513	0.0128	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SKLMS1_SOFT_TISSUE	0.83	1	0.0641	TRUE	0	1	0	84	1	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	PTPRK--THEMIS	3	4	PTPRK	21019	chr6:128403582:-	THEMIS	56811	chr6:128151079:-	ONLY_REF_SPLICE	YES	130	5	0.05	0.58	0.0385	0.0513	{Klijn_CCL:Lung=1},NEIGHBORS[50148],PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,THEMIS->chr6:128029217-128239776:-,thymocyte_selection_associated	SKLMS1_SOFT_TISSUE	0.05	0.58	0.0898	FALSE	0	0	0	1	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	VPS13D--TNFRSF1B	4	0	VPS13D	4677	chr1:12304674:+	TNFRSF1B	98289	chr1:12262024:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0513	0	LOCAL_REARRANGEMENT:+:[20839],VPS13D->chr1:12290124-12572099:+,vacuolar_protein_sorting_13_homolog_D,TNFRSF1B->Oncogene{Bushman},chr1:12227060-12269285:+,tumor_necrosis_factor_receptor_superfamily_member_1B	SKLMS1_SOFT_TISSUE	1	1	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	RP11-444D3.1--SOX5	3	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0.0256	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKLMS1_SOFT_TISSUE	1	1	0.0641	TRUE	477	1352	189	275	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	ZMPSTE24--RLF	3	2	ZMPSTE24	9875	chr1:40747199:+	RLF	26190	chr1:40701464:+	ONLY_REF_SPLICE	YES	102	29	0.05	0.15	0.0385	0.0256	LOCAL_REARRANGEMENT:+:[17186],ZMPSTE24->chr1:40723779-40759856:+,zinc_metallopeptidase_STE24,RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion	SKLMS1_SOFT_TISSUE	0.05	0.15	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	RP11-163F15.1--RP11-215N21.1	3	1	RP11-163F15.1	1139	chr10:110321435:-	RP11-215N21.1	6576	chr10:109871360:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0385	0.0128	RP11-163F15.1->chr10:110307733-110321573:-,RP11-215N21.1->chr10:109517591-109871360:-	SKLMS1_SOFT_TISSUE	0.67	1	0.0513	TRUE	0	5	0	7	5	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	COA1--STK17A	3	0	COA1	1289	chr7:43769028:-	STK17A	27976	chr7:43635500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	NEIGHBORS_OVERLAP:-:+:[18330],COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,STK17A->chr7:43622357-43666385:+,serine/threonine_kinase_17a	SKLMS1_SOFT_TISSUE	1	1	0.0385	FALSE	0	3	1	13	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	PTPRK--THEMIS	1	8	PTPRK	21019	chr6:128403582:-	THEMIS	54412	chr6:128222226:-	ONLY_REF_SPLICE	YES	130	0	0.06	1	0.0128	0.1026	{Klijn_CCL:Lung=1},NEIGHBORS[50148],PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,THEMIS->chr6:128029217-128239776:-,thymocyte_selection_associated	SKLMS1_SOFT_TISSUE	0.06	1	0.1154	FALSE	0	0	0	1	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	SKLMS1_SOFT_TISSUE	1	1	0.0385	TRUE	22	156	2	142	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	STAG1--ARMC8	3	0	STAG1	1184	chr3:136471037:-	ARMC8	66347	chr3:138003273:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,ARMC8->armadillo_repeat_containing_8,chr3:137906109-138017231:+	SKLMS1_SOFT_TISSUE	1	1	0.0385	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	LPCAT3--C1S	2	3	LPCAT3	1237	chr12:7125578:-	C1S	19441	chr12:7169056:+	ONLY_REF_SPLICE	YES	41	68	0.11	0.07	0.0256	0.0385	NEIGHBORS_OVERLAP:-:+:[29463],LPCAT3->chr12:7085348-7125814:-,lysophosphatidylcholine_acyltransferase_3,C1S->chr12:7096351-7178336:+,complement_component_1,_s_subcomponent	SKLMS1_SOFT_TISSUE	0.07	0.11	0.0641	FALSE	0	0	0	1	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	RFFL--TRPC3	1	7	RFFL	10302	chr17:33348390:-	TRPC3	26355	chr4:122854197:-	ONLY_REF_SPLICE	YES	20	1	0.29	0.89	0.0128	0.0897	RFFL->chr17:33333009-33416338:-,ring_finger_and_FYVE-like_domain_containing_E3_ubiquitin_protein_ligase,TRPC3->chr4:122800182-122872909:-,transient_receptor_potential_cation_channel_subfamily_C_member_3	SKLMS1_SOFT_TISSUE	0.29	0.89	0.1025	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	ZMYND8--RP1-148H17.1	2	3	ZMYND8	7645	chr20:45947695:-	RP1-148H17.1	38977	chr20:46040137:-	ONLY_REF_SPLICE	YES	60	0	0.08	1	0.0256	0.0385	LOCAL_REARRANGEMENT:-:[35106],ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,RP1-148H17.1->chr20:46020673-46041071:-	SKLMS1_SOFT_TISSUE	0.08	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	PRR16--CTD-2334D19.1	1	6	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	NO	69	0	0.09	1	0.0128	0.0769	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKLMS1_SOFT_TISSUE	0.09	1	0.0897	FALSE	1	13	0	24	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	SKLMS1_SOFT_TISSUE	1	1	0.0256	TRUE	2	8	0	24	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	COL8A1--NLN	2	0	COL8A1	1190	chr3:99357508:+	NLN	24734	chr5:65054394:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,NLN->chr5:65018023-65167553:+,neurolysin	SKLMS1_SOFT_TISSUE	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	HP1BP3--EIF4G3	2	0	HP1BP3	1129	chr1:21113688:-	EIF4G3	30977	chr1:21377487:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	SKLMS1_SOFT_TISSUE	1	1	0.0256	TRUE	0	0	0	3	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	KCNQ5-IT1--KCNQ5	2	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	SKLMS1_SOFT_TISSUE	1	1	0.0256	FALSE	1	11	0	34	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SKLMS1_SOFT_TISSUE	1	1	0.0256	TRUE	3	14	2	43	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	TNRC6C--SPAG9	2	0	TNRC6C	4297	chr17:76027923:+	SPAG9	36946	chr17:49157065:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	TNRC6C->chr17:76000249-76104916:+,trinucleotide_repeat_containing_6C,SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9	SKLMS1_SOFT_TISSUE	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	ZMYND8--RP1-148H17.1	1	3	ZMYND8	6534	chr20:45976600:-	RP1-148H17.1	38977	chr20:46040137:-	ONLY_REF_SPLICE	YES	27	0	0.13	1	0.0128	0.0385	LOCAL_REARRANGEMENT:-:[35106],ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,RP1-148H17.1->chr20:46020673-46041071:-	SKLMS1_SOFT_TISSUE	0.13	1	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000145
SKLMS1_SOFT_TISSUE	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	39	0.5	0.07	0.0128	0.0256	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKLMS1_SOFT_TISSUE	0.07	0.5	0.0384	FALSE	16	356	14	466	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0128	0.0256	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKLMS1_SOFT_TISSUE	1	1	0.0384	TRUE	274	363	69	150	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	RP6-206I17.1--SEC22B	1	2	RP6-206I17.1	2217	chr1:143744201:-	SEC22B	14361	chr1:145103908:+	ONLY_REF_SPLICE	YES	1	620	0.75	0	0.0128	0.0256	GTEx_FI:{Esophagus=[count:4=pct:1.0],Brain=[count:3=pct:0.5],Blood_Vessel=[count:3=pct:0.8],Pancreas=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},RP6-206I17.1->chr1:143647638-143745417:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SKLMS1_SOFT_TISSUE	0	0.75	0.0384	FALSE	4	11	1	1	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	STAG1--ARMC8	1	2	STAG1	1184	chr3:136471037:-	ARMC8	65251	chr3:137993291:+	ONLY_REF_SPLICE	YES	79	48	0.04	0.06	0.0128	0.0256	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,ARMC8->armadillo_repeat_containing_8,chr3:137906109-138017231:+	SKLMS1_SOFT_TISSUE	0.04	0.06	0.0384	TRUE	0	0	0	1	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	LPCAT3--C1S	1	1	LPCAT3	1237	chr12:7125578:-	C1S	19528	chr12:7169143:+	ONLY_REF_SPLICE	YES	41	42	0.05	0.05	0.0128	0.0128	NEIGHBORS_OVERLAP:-:+:[29463],LPCAT3->chr12:7085348-7125814:-,lysophosphatidylcholine_acyltransferase_3,C1S->chr12:7096351-7178336:+,complement_component_1,_s_subcomponent	SKLMS1_SOFT_TISSUE	0.05	0.05	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	MATR3--CTNNA1	1	1	MATR3	9772	chr5:138629494:+	CTNNA1	45982	chr5:138145727:+	ONLY_REF_SPLICE	YES	28	415	0.07	0	0.0128	0.0128	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	SKLMS1_SOFT_TISSUE	0	0.07	0.0256	FALSE	3	14	0	14	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	QARS--C3orf84	1	1	QARS	8129	chr3:49135425:-	C3orf84	14274	chr3:49227571:-	ONLY_REF_SPLICE	YES	72	0	0.03	1	0.0128	0.0128	LOCAL_REARRANGEMENT:-:[72512],QARS->chr3:49133365-49142553:-,glutaminyl-tRNA_synthetase,C3orf84->chr3:49215065-49229291:-,chromosome_3_open_reading_frame_84	SKLMS1_SOFT_TISSUE	0.03	1	0.0256	TRUE	0	0	0	1	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	RP11-155G15.2--RP11-1E3.1	1	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0128	0.0128	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	SKLMS1_SOFT_TISSUE	1	1	0.0256	FALSE	46	201	11	112	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	10	282	0.17	0.01	0.0128	0.0128	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SKLMS1_SOFT_TISSUE	0.01	0.17	0.0256	FALSE	0	59	0	125	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	1792	145	0	0.01	0.0128	0.0128	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SKLMS1_SOFT_TISSUE	0	0.01	0.0256	FALSE	6	50	7	115	0	FALSE	ACH-000145
SKLMS1_SOFT_TISSUE	ZMPSTE24--TMCO2	1	1	ZMPSTE24	8690	chr1:40737707:+	TMCO2	21006	chr1:40716955:+	ONLY_REF_SPLICE	YES	134	0	0.01	1	0.0128	0.0128	LOCAL_REARRANGEMENT:+:[6416],ZMPSTE24->chr1:40723779-40759856:+,zinc_metallopeptidase_STE24,TMCO2->chr1:40711619-40717363:+,transmembrane_and_coiled-coil_domains_2	SKLMS1_SOFT_TISSUE	0.01	1	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-000145
TE8_OESOPHAGUS	TIMM23B--PARGP1	18	5	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2599	0.0722	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	TE8_OESOPHAGUS	1	1	0.3321	TRUE	393	2105	140	19	0	FALSE	ACH-000452
TE8_OESOPHAGUS	CHD6--MLIP	16	0	CHD6	4417	chr20:40179944:-	MLIP	59094	chr6:53986245:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.231	0	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,MLIP->chr6:53794780-54131078:+,muscular_LMNA-interacting_protein	TE8_OESOPHAGUS	1	1	0.231	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	TIMM23--RP11-464F9.1	15	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2166	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TE8_OESOPHAGUS	1	1	0.2166	TRUE	519	3926	326	965	0	FALSE	ACH-000452
TE8_OESOPHAGUS	ST3GAL1--CASC8	6	1	ST3GAL1	12845	chr8:134487962:-	CASC8	34529	chr8:128302305:-	ONLY_REF_SPLICE	YES	21	0	0.25	1	0.0866	0.0144	ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	TE8_OESOPHAGUS	0.25	1	0.101	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	PVT1--WISP1	5	2	PVT1	10746	chr8:128951922:+	WISP1	29627	chr8:134225107:+	ONLY_REF_SPLICE	YES	11	2	0.39	0.78	0.0722	0.0289	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,WISP1->WNT1_inducible_signaling_pathway_protein_1,chr8:134203282-134242587:+	TE8_OESOPHAGUS	0.39	0.78	0.1011	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	MSNP1--RP11-399D6.2	5	0	MSNP1	1978	chr5:25910589:+	RP11-399D6.2	6943	chr9:22674555:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0	MSNP1->chr5:25909612-25911343:+,moesin_pseudogene_1,RP11-399D6.2->chr9:22646199-22824212:+	TE8_OESOPHAGUS	1	1	0.0722	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TE8_OESOPHAGUS	1	1	0.0722	TRUE	0	0	0	518	0	FALSE	ACH-000452
TE8_OESOPHAGUS	C7orf10--ZNFX1	4	0	C7orf10	24426	chr7:40900279:+	ZNFX1	36409	chr20:47877061:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	C7orf10->chr7:40174575-40900362:+,ZNFX1->chr20:47854483-47894963:-,zinc_finger_NFX1-type_containing_1	TE8_OESOPHAGUS	1	1	0.0578	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	EHD2--PEA15	4	0	EHD2	2622	chr19:48220240:+	PEA15	20677	chr1:160183730:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	EHD2->EH_domain_containing_2,chr19:48216600-48246391:+,PEA15->chr1:160175127-160185166:+,phosphoprotein_enriched_in_astrocytes_15	TE8_OESOPHAGUS	1	1	0.0578	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	AC119673.1--MT-ND2	3	0	AC119673.1	2619	chr1:205684115:+	MT-ND2	6381	chrM:5193:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	AC119673.1->chr1:205682497-205684153:+,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TE8_OESOPHAGUS	1	1	0.0433	FALSE	0	0	0	1	0	FALSE	ACH-000452
TE8_OESOPHAGUS	COL4A2--RTN4	3	0	COL4A2	37230	chr13:111144497:+	RTN4	55487	chr2:55277680:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	EEF1A2--CHD4	3	0	EEF1A2	4317	chr20:62126382:-	CHD4	29723	chr12:6690953:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	EEF1A2->Oncogene{Bushman},chr20:62119366-62130505:-,eukaryotic_translation_elongation_factor_1_alpha_2,CHD4->ArcherDX_panel,FoundationOne_panel,chr12:6679249-6716642:-,chromodomain_helicase_DNA_binding_protein_4	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	FAM65A--MT-ND2	3	0	FAM65A	11158	chr16:67576435:+	MT-ND2	18858	chrM:4913:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	FAM65A->chr16:67552321-67580691:+,family_with_sequence_similarity_65_member_A,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TE8_OESOPHAGUS	1	1	0.0433	FALSE	0	0	0	1	0	FALSE	ACH-000452
TE8_OESOPHAGUS	JSRP1--VIM	3	0	JSRP1	1205	chr19:2269554:-	VIM	11526	chr10:17271377:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,VIM->chr10:17270258-17279592:+,vimentin	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	3	0	TRUE	ACH-000452
TE8_OESOPHAGUS	JSRP1--VIM	3	0	JSRP1	1192	chr19:2269567:-	VIM	11424	chr10:17271275:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,VIM->chr10:17270258-17279592:+,vimentin	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	3	0	TRUE	ACH-000452
TE8_OESOPHAGUS	NAA15--DACH1	3	0	NAA15	30713	chr4:140339412:+	DACH1	50015	chr13:72012867:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	NAA15->N(alpha)-acetyltransferase_15,_NatA_auxiliary_subunit,chr4:140222609-140341187:+,DACH1->chr13:72012098-72441330:-,dachshund_family_transcription_factor_1	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	PAAF1--MRPL48	3	0	PAAF1	15342	chr11:73630077:+	MRPL48	36435	chr11:73575341:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0433	0	LOCAL_REARRANGEMENT:+:[11566],PAAF1->chr11:73587744-73638790:+,proteasomal_ATPase_associated_factor_1,MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	PCAT1--RP11-382A18.2	3	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	TE8_OESOPHAGUS	1	1	0.0433	TRUE	4	84	1	46	0	FALSE	ACH-000452
TE8_OESOPHAGUS	PTGR1--DNAJC25	3	0	PTGR1	4736	chr9:114355206:-	DNAJC25	27633	chr9:114431549:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	LOCAL_INVERSION:-:+:[31497],PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1,DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	STAU1--MT-RNR2	3	0	STAU1	18192	chr20:47730871:-	MT-RNR2	23379	chrM:2864:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE8_OESOPHAGUS	1	1	0.0433	FALSE	0	0	0	1	0	FALSE	ACH-000452
TE8_OESOPHAGUS	TALDO1--RABL6	3	0	TALDO1	1250	chr11:747578:+	RABL6	15768	chr9:139717977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0433	0	TALDO1->chr11:747329-765024:+,transaldolase_1,RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	TPM2--SPTAN1	3	0	TPM2	4924	chr9:35684729:-	SPTAN1	12541	chr9:131329143:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	UBL7--MMP14	3	0	UBL7	10041	chr15:74738484:-	MMP14	20086	chr14:23315697:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	UBL7->Oncogene{Bushman},chr15:74738318-74753523:-,ubiquitin_like_7,MMP14->Oncogene{Bushman},chr14:23305766-23318236:+,matrix_metallopeptidase_14	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	URI1--UBE2M	3	0	URI1	11911	chr19:30477275:+	UBE2M	27251	chr19:59068136:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+,UBE2M->chr19:59067079-59070327:-,ubiquitin_conjugating_enzyme_E2_M	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	ZFAS1--GZF1	3	0	ZFAS1	2031	chr20:47895745:+	GZF1	10750	chr20:23345000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0433	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,GZF1->GDNF_inducible_zinc_finger_protein_1,chr20:23342787-23353700:+	TE8_OESOPHAGUS	1	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	CHKA--STPG2-AS1	2	1	CHKA	5944	chr11:67848871:-	STPG2-AS1	23685	chr4:98410925:+	ONLY_REF_SPLICE	YES	31	0	0.09	1	0.0289	0.0144	CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,STPG2-AS1->STPG2_antisense_RNA_1,chr4:98288077-98411315:+	TE8_OESOPHAGUS	0.09	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	AC131097.3--EIF3D	2	0	AC131097.3	2273	chr2:242824786:+	EIF3D	19936	chr22:36913478:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	AC131097.3->chr2:242823514-243020873:+,EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	DPH5--TXNDC11	2	0	DPH5	4639	chr1:101487197:-	TXNDC11	28121	chr16:11782301:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	DPH5->chr1:101455179-101491644:-,diphthamide_biosynthesis_5,TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	FANCI--EDC3	2	0	FANCI	1119	chr15:89787298:+	EDC3	47066	chr15:74967483:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,EDC3->chr15:74922899-74988633:-,enhancer_of_mRNA_decapping_3	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	FBXL8--TCEA2	2	0	FBXL8	2944	chr16:67195840:+	TCEA2	15003	chr20:62697829:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	FBXL8->F-box_and_leucine-rich_repeat_protein_8,chr16:67193834-67198473:+,TCEA2->chr20:62681189-62703700:+,transcription_elongation_factor_A2	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	GON4L--LIN9	2	0	GON4L	3780	chr1:155823067:-	LIN9	48328	chr1:226475498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	GON4L->chr1:155719508-155829191:-,gon-4_like,LIN9->chr1:226418850-226497570:-,lin-9_DREAM_MuvB_core_complex_component	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	HERC4--RPS21	2	0	HERC4	3466	chr10:69832640:-	RPS21	44146	chr20:60962377:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	HERC4->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_4,chr10:69681665-69835105:-,RPS21->chr20:60962172-60963576:+,ribosomal_protein_S21	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	LMAN2--NSD1	2	0	LMAN2	1680	chr5:176778174:-	NSD1	15733	chr5:176618885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_INVERSION:-:+:[31347],LMAN2->chr5:176758563-176778853:-,lectin,_mannose_binding_2,NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	MSRB3--RP11-592B15.4	2	0	MSRB3	7192	chr12:65722383:+	RP11-592B15.4	22053	chr10:51363787:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3,RP11-592B15.4->chr10:51287081-51371070:-	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	OAZ1--PPP6R2	2	0	OAZ1	1259	chr19:2269743:+	PPP6R2	23324	chr22:50873395:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	GTEx_FI:{Blood=[count:2=pct:1.1],Lung=[count:1=pct:0.6],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=6;pct=0.07%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Artery_-_Tibial=1,Lung=1,Whole_Blood=1,Colon_-_Sigmoid=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2	TE8_OESOPHAGUS	1	1	0.0289	TRUE	6	1	0	7	0	FALSE	ACH-000452
TE8_OESOPHAGUS	PHF20--VIMP	2	0	PHF20	4583	chr20:34389527:+	VIMP	36969	chr15:101815566:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,VIMP->VCP_interacting_membrane_selenoprotein,chr15:101811022-101817705:-	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	PTK2--TSNARE1	2	0	PTK2	2092	chr8:142011224:-	TSNARE1	79086	chr8:143365846:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	{Klijn_CCL:Lung=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TSNARE1->chr8:143293441-143484601:-,t-SNARE_domain_containing_1	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	RASAL2--PTK2	2	0	RASAL2	1966	chr1:178063829:+	PTK2	81320	chr8:141727808:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	RASAL2->Oncogene{Bushman},RAS_protein_activator_like_2,chr1:178062864-178448644:+,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	RBM27--YIPF5	2	0	RBM27	19802	chr5:145651237:+	YIPF5	32241	chr5:143545168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+,YIPF5->Yip1_domain_family_member_5,chr5:143537723-143550278:-	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	RPL5--SQSTM1	2	0	RPL5	1093	chr1:93297674:+	SQSTM1	21704	chr5:179249958:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5,SQSTM1->chr5:179233388-179265078:+,sequestosome_1	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	SDCBP--SRP9	2	0	SDCBP	4943	chr8:59477625:+	SRP9	17452	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	2	0	TRUE	ACH-000452
TE8_OESOPHAGUS	SMEK1--CATSPERB	2	0	SMEK1	2049	chr14:91975850:-	CATSPERB	54577	chr14:92053620:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_REARRANGEMENT:-:[70142],SMEK1->chr14:91923955-91976898:-,CATSPERB->cation_channel_sperm_associated_auxiliary_subunit_beta,chr14:92047040-92247051:-	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	SNAPC3--INSIG2	2	0	SNAPC3	5811	chr9:15447242:+	INSIG2	24212	chr2:118864666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	SNAPC3->Oncogene{Bushman},chr9:15422702-15465951:+,small_nuclear_RNA_activating_complex_polypeptide_3,INSIG2->chr2:118846028-118868573:+,insulin_induced_gene_2	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	SNHG12--FBXL20	2	0	SNHG12	4072	chr1:28906424:-	FBXL20	15966	chr17:37441826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	SNHG12->chr1:28905050-28909495:-,small_nucleolar_RNA_host_gene_12,FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	TFDP1--NT5DC2	2	0	TFDP1	9578	chr13:114290443:+	NT5DC2	21200	chr3:52563350:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1,NT5DC2->5'-nucleotidase_domain_containing_2,chr3:52558386-52569070:-	TE8_OESOPHAGUS	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TE8_OESOPHAGUS	1	1	0.0289	TRUE	5	8	0	33	0	FALSE	ACH-000452
TE8_OESOPHAGUS	TIMM23B--PARGP1	2	0	TIMM23B	1257	chr10:51371646:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	TE8_OESOPHAGUS	1	1	0.0289	TRUE	1	4	0	1	0	FALSE	ACH-000452
TE8_OESOPHAGUS	ASAP1--TMEM71	1	1	ASAP1	37276	chr8:131092148:-	TMEM71	56779	chr8:133726461:-	ONLY_REF_SPLICE	NO	24	0	0.08	1	0.0144	0.0144	GTEx&tcga_normals:1/3694=0.03%,ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,TMEM71->chr8:133697253-133772958:-,transmembrane_protein_71	TE8_OESOPHAGUS	0.08	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000452
TE8_OESOPHAGUS	ASAP1--TMEM71	1	1	ASAP1	38335	chr8:131088594:-	TMEM71	56779	chr8:133726461:-	ONLY_REF_SPLICE	YES	23	0	0.08	1	0.0144	0.0144	GTEx&tcga_normals:1/3694=0.03%,ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,TMEM71->chr8:133697253-133772958:-,transmembrane_protein_71	TE8_OESOPHAGUS	0.08	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000452
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CYFIP2--PLCG2	223	114	CYFIP2	40402	chr5:156816435:+	PLCG2	60611	chr16:81902819:+	ONLY_REF_SPLICE	YES	349	106	0.49	0.76	2.5276	1.2922	{Klijn_CCL:Lymphoid=1},CYFIP2->chr5:156693089-156822606:+,cytoplasmic_FMR1_interacting_protein_2,PLCG2->ArcherDX_panel,FoundationOne_panel,chr16:81772702-81991899:+,phospholipase_C_gamma_2	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.76	3.8198	TRUE	0	0	0	2	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32E--PTMA	108	2	ANP32E	7086	chr1:150199005:-	PTMA	19614	chr2:232576640:+	INCL_NON_REF_SPLICE	YES	483	9745	0.19	0.01	1.2242	0.0227	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.19	1.2469	TRUE	0	0	0	2	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	89	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0088	0.2947	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.3035	TRUE	508	994	45	981	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	52	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5894	0.0907	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6801	FALSE	462	80	0	856	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32E--PTMA	51	1	ANP32E	7037	chr1:150199054:-	PTMA	19616	chr2:232576642:+	INCL_NON_REF_SPLICE	NO	527	9657	0.09	0.01	0.5781	0.0113	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.09	0.5894	FALSE	0	0	0	2	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	50	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	201	8	0.21	0.87	0.5667	0.0567	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.87	0.6234	TRUE	519	3926	326	965	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32E--PTMA	37	3	ANP32E	8260	chr1:150195512:-	PTMA	19044	chr2:232576070:+	INCL_NON_REF_SPLICE	YES	334	10283	0.11	0	0.4194	0.034	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.11	0.4534	TRUE	0	0	0	2	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	36	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4081	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4081	TRUE	0	0	0	518	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32E--PTMA	21	2	ANP32E	7054	chr1:150199037:-	PTMA	19074	chr2:232576100:+	INCL_NON_REF_SPLICE	YES	507	9929	0.04	0	0.238	0.0227	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.2607	TRUE	0	0	0	2	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	21	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.238	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.238	FALSE	230	193	14	283	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32E--PTMA	20	2	ANP32E	7039	chr1:150199052:-	PTMA	19042	chr2:232576068:+	INCL_NON_REF_SPLICE	NO	546	10349	0.04	0	0.2267	0.0227	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.2494	FALSE	0	0	0	2	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	17	2	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	8453	0	0	1	0.1927	0.0227	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2154	TRUE	0	0	0	100	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--B2M	16	2	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	9941	0	0	1	0.1814	0.0227	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2041	TRUE	0	0	0	28	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32E--PTMA	16	1	ANP32E	7040	chr1:150199051:-	PTMA	19616	chr2:232576642:+	INCL_NON_REF_SPLICE	NO	523	9657	0.03	0	0.1814	0.0113	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.1927	FALSE	0	0	0	2	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	14	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1587	0.034	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1927	FALSE	499	1288	110	792	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32E--PTMA	12	2	ANP32E	7086	chr1:150199005:-	PTMA	19629	chr2:232576655:+	INCL_NON_REF_SPLICE	YES	483	9526	0.03	0	0.136	0.0227	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.1587	TRUE	0	0	0	2	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANPEP--MT-ND4L	11	0	ANPEP	16060	chr15:90328379:-	MT-ND4L	19321	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1247	0	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1247	FALSE	0	1	0	16	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	10	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1133	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1133	FALSE	230	198	14	283	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	9	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.102	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.102	TRUE	0	0	0	81	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0793	0.068	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1473	FALSE	499	1288	110	792	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32E--PTMA	8	1	ANP32E	7046	chr1:150199045:-	PTMA	19598	chr2:232576624:+	INCL_NON_REF_SPLICE	NO	507	9792	0.02	0	0.0907	0.0113	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.102	FALSE	0	0	0	2	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0907	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0907	FALSE	13	9	0	364	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19413	0	0	1	0.0793	0.0453	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1246	FALSE	231	217	16	283	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--IRF2BP2	7	2	CPSF6	11046	chr12:69656342:+	IRF2BP2	21567	chr1:234743598:-	ONLY_REF_SPLICE	YES	193	950	0.04	0.01	0.0793	0.0227	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.102	TRUE	0	9	0	3	1	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16428	10	0	0.44	0.0793	0.0113	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.44	0.0906	FALSE	231	205	14	283	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--KBTBD11	6	4	CPSF6	11046	chr12:69656342:+	KBTBD11	27212	chr8:1954711:+	INCL_NON_REF_SPLICE	YES	193	167	0.05	0.06	0.068	0.0453	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,KBTBD11->chr8:1922044-1955102:+,kelch_repeat_and_BTB_domain_containing_11	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.06	0.1133	TRUE	0	1	0	4	1	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32E--PTMA	6	3	ANP32E	7086	chr1:150199005:-	PTMA	19047	chr2:232576073:+	INCL_NON_REF_SPLICE	YES	483	10190	0.02	0	0.068	0.034	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.102	TRUE	0	0	0	2	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.068	0.034	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.102	FALSE	499	1288	110	792	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	6	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.068	0.0227	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0907	TRUE	0	1	0	84	1	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	8	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0453	0.0907	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.136	FALSE	209	205	15	279	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	6	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.068	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.068	TRUE	22	156	2	142	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0.0793	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1246	FALSE	462	80	0	856	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32E--PTMA	5	2	ANP32E	7040	chr1:150199051:-	PTMA	19589	chr2:232576615:+	INCL_NON_REF_SPLICE	NO	523	10140	0.01	0	0.0567	0.0227	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0794	FALSE	0	0	0	2	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32E--PTMA	5	2	ANP32E	7050	chr1:150199041:-	PTMA	19584	chr2:232576610:+	INCL_NON_REF_SPLICE	YES	501	10048	0.01	0	0.0567	0.0227	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0794	FALSE	0	0	0	2	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL18--TMSB4X	5	2	RPL18	4351	chr19:49119443:-	TMSB4X	8235	chrX:12993252:+	INCL_NON_REF_SPLICE	YES	6488	0	0	1	0.0567	0.0227	RPL18->chr19:49118585-49122793:-,ribosomal_protein_L18,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0794	FALSE	0	0	0	4	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	5	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	17304	0	0	1	0.0453	0.0567	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.102	FALSE	231	217	16	283	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PRTN3	5	0	C17orf76-AS1	1593	chr17:16342728:+	PRTN3	14430	chr19:843461:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0567	0	C17orf76-AS1->chr17:16342136-16381992:+,PRTN3->chr19:840963-848175:+,proteinase_3	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0567	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL5	5	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0567	TRUE	0	0	0	39	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	0	MT-ND4	1244	chrM:11003:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0567	FALSE	231	204	14	283	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYO1G--RPLP2	5	0	MYO1G	12533	chr7:45006370:-	RPLP2	19974	chr11:809978:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0	MYO1G->chr7:45002261-45018697:-,myosin_IG,RPLP2->chr11:809647-812880:+,ribosomal_protein_lateral_stalk_subunit_P2	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0567	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TET2--AIMP1	5	0	TET2	2105	chr4:106068136:+	AIMP1	31913	chr4:107246142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0567	0	TET2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:106067032-106200973:+,tet_methylcytosine_dioxygenase_2,AIMP1->aminoacyl_tRNA_synthetase_complex-interacting_multifunctional_protein_1,chr4:107236701-107270383:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0567	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17843	10	0	0.41	0.0453	0.034	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.41	0.0793	FALSE	231	217	16	283	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	112	42	0.07	0.16	0.034	0.0567	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.16	0.0907	TRUE	267	562	48	632	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	5	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	17890	0	0	1	0.034	0.0567	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0907	FALSE	231	217	16	283	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	5	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	17841	0	0	1	0.034	0.0567	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0907	FALSE	231	217	16	283	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL12--GAS5	4	1	RPL12	3125	chr9:130211560:-	GAS5	11911	chr1:173833842:-	ONLY_REF_SPLICE	YES	7967	4636	0	0	0.0453	0.0113	RPL12->chr9:130209953-130213684:-,ribosomal_protein_L12,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0566	FALSE	0	1	0	5	1	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	0	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0453	TRUE	0	0	0	81	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0453	FALSE	13	9	0	364	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	20279	0	0	1	0.034	0.0453	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0793	FALSE	231	217	16	283	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	19865	0	0	1	0.034	0.0453	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0793	FALSE	231	217	16	283	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	4	0	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0453	0	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0453	TRUE	61	154	6	19	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SYNCRIP--EEF1A1P5	4	0	SYNCRIP	1996	chr6:86352515:-	EEF1A1P5	20418	chr9:135894843:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0	SYNCRIP->chr6:86318053-86353510:-,synaptotagmin_binding_cytoplasmic_RNA_interacting_protein,EEF1A1P5->chr9:135894816-135896553:+,eukaryotic_translation_elongation_factor_1_alpha_1_pseudogene_5	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0453	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17371	75	0	0.07	0.034	0.034	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.068	FALSE	231	217	16	283	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	3	MT-ND4	1903	chrM:11662:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	17864	210	0	0.03	0.034	0.034	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.068	FALSE	231	217	16	283	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32E--PTMA	3	2	ANP32E	7048	chr1:150199043:-	PTMA	19588	chr2:232576614:+	INCL_NON_REF_SPLICE	NO	510	10137	0.01	0	0.034	0.0227	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0567	FALSE	0	0	0	2	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PANK4--SKI	3	2	PANK4	1137	chr1:2457903:-	SKI	22492	chr1:2234417:+	ONLY_REF_SPLICE	YES	97	48	0.05	0.09	0.034	0.0227	GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PANK4->chr1:2439972-2458039:-,pantothenate_kinase_4,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.09	0.0567	TRUE	1	1	0	4	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32E--PTMA	3	1	ANP32E	7047	chr1:150199044:-	PTMA	19593	chr2:232576619:+	INCL_NON_REF_SPLICE	NO	509	10090	0.01	0	0.034	0.0113	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0453	FALSE	0	0	0	2	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL5	3	1	EIF1	1103	chr17:39845239:+	RPL5	7818	chr1:93297615:+	INCL_NON_REF_SPLICE	YES	24	0	0.14	1	0.034	0.0113	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.0453	TRUE	0	0	0	39	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL12--SNHG3	3	1	RPL12	3125	chr9:130211560:-	SNHG3	9881	chr1:28834640:+	ONLY_REF_SPLICE	YES	7967	67	0	0.06	0.034	0.0113	RPL12->chr9:130209953-130213684:-,ribosomal_protein_L12,SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.0453	FALSE	0	0	0	1	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL18--TMSB4X	3	1	RPL18	3813	chr19:49119981:-	TMSB4X	8221	chrX:12993238:+	INCL_NON_REF_SPLICE	YES	7674	0	0	1	0.034	0.0113	RPL18->chr19:49118585-49122793:-,ribosomal_protein_L18,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0453	FALSE	0	0	0	4	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAPZB--PSMB1	3	0	CAPZB	1137	chr1:19811930:-	PSMB1	21681	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD8--HNRNPC	3	0	CHD8	1095	chr14:21924191:-	HNRNPC	47891	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	1	3	0	10	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--ALDOA	3	0	EIF1	1079	chr17:39845215:+	ALDOA	14091	chr16:30077079:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	2	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	81	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	0	EIF1	1089	chr17:39845225:+	RPS28	8128	chr19:8386385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	81	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	0	EIF1	1087	chr17:39845223:+	RPS28	8126	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	81	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5571	chrM:8558:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	FALSE	231	204	14	283	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	FALSE	230	197	14	283	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTFR1--EIF3E	3	0	MTFR1	1051	chr8:66557019:+	EIF3E	36919	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	MTFR1->chr8:66556969-66683496:+,mitochondrial_fission_regulator_1,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	3	0	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	30	67	4	15	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	3	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	FALSE	0	0	0	189	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BSG--GNAS	2	1	BSG	2405	chr19:572701:+	GNAS	29302	chr20:57470667:+	ONLY_REF_SPLICE	YES	805	709	0	0	0.0227	0.0113	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.034	FALSE	0	1	1	2	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	2	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	106	61	0.03	0.05	0.0227	0.0113	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.05	0.034	TRUE	3	48	0	26	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MANBA--UBE2D3	2	1	MANBA	1277	chr4:103681875:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	NO	222	1052	0.01	0	0.0227	0.0113	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.034	FALSE	12	9	1	12	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--KLF16	2	1	OAZ1	1259	chr19:2269743:+	KLF16	9779	chr19:1854759:-	ONLY_REF_SPLICE	YES	4532	30	0	0.09	0.0227	0.0113	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Whole_Blood=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,KLF16->Kruppel-like_factor_16,chr19:1852399-1863567:-	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.034	FALSE	6	0	0	3	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0.0113	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	62	24	1	171	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC073610.5--PGAM5	2	0	AC073610.5	1009	chr12:49333438:-	PGAM5	11815	chr12:133297264:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	AC073610.5->chr12:49315767-49333446:-,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--ADRBK1	2	0	C17orf76-AS1	1593	chr17:16342728:+	ADRBK1	17489	chr11:67046671:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	C17orf76-AS1->chr17:16342136-16381992:+,ADRBK1->adrenergic,_beta,_receptor_kinase_1,chr11:67033881-67054027:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERBB2--ACTL8	2	0	ERBB2	1887	chr17:37845053:+	ACTL8	31362	chr1:18149480:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,ACTL8->actin_like_8,chr1:18081808-18153558:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM60A--TMEM181	2	0	FAM60A	2035	chr12:31478958:-	TMEM181	20358	chr6:158994452:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FUBP1--C9orf40	2	0	FUBP1	14090	chr1:78414840:-	C9orf40	23656	chr9:77563122:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,C9orf40->chr9:77561497-77567802:-,chromosome_9_open_reading_frame_40	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--ESRRA	2	0	OAZ1	1259	chr19:2269743:+	ESRRA	11121	chr11:64081423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2E--TNK2	2	0	POLR2E	1341	chr19:1095258:-	TNK2	20639	chr3:195615477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	POLR2E->chr19:1086594-1095598:-,polymerase_(RNA)_II_subunit_E,TNK2->chr3:195590235-195638816:-,tyrosine_kinase_non_receptor_2	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-893F2.9--RNF41	2	0	RP11-893F2.9	1116	chr17:48365101:-	RNF41	13727	chr12:56602082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RP11-893F2.9->chr17:48358938-48365216:-,RNF41->chr12:56598285-56615717:-,ring_finger_protein_41	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL31--MGARP	2	0	RPL31	5008	chr2:101622533:+	MGARP	14745	chr4:140196546:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RPL31->chr2:101618177-101640494:+,ribosomal_protein_L31,MGARP->chr4:140187317-140201492:-,mitochondria_localized_glutamic_acid_rich_protein	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL5--SPRY2	2	0	RPL5	1093	chr1:93297674:+	SPRY2	14777	chr13:80911891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5,SPRY2->chr13:80910111-80915086:-,sprouty_RTK_signaling_antagonist_2	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM52--IRF2BP2	1	3	TRIM52	2118	chr5:180687002:-	IRF2BP2	11611	chr1:234743598:-	ONLY_REF_SPLICE	YES	43	950	0.09	0	0.0113	0.034	TRIM52->chr5:180681417-180688119:-,tripartite_motif_containing_52,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0453	FALSE	0	0	0	1	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IRF2--ING2	1	2	IRF2	1202	chr4:185395533:-	ING2	18795	chr4:184431435:+	ONLY_REF_SPLICE	YES	138	84	0.02	0.03	0.0113	0.0227	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},IRF2->ArcherDX_panel,FoundationOne_panel,chr4:185308867-185395734:-,interferon_regulatory_factor_2,ING2->Oncogene{Bushman},chr4:184426147-184432249:+,inhibitor_of_growth_family_member_2	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.034	TRUE	0	0	0	2	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--CTBP1	1	2	UVSSA	7499	chr4:1349033:+	CTBP1	24040	chr4:1235307:-	ONLY_REF_SPLICE	NO	24	32	0.11	0.09	0.0113	0.0227	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.11	0.034	TRUE	23	5	0	14	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BACH1-IT1--BACH1	1	1	BACH1-IT1	2030	chr21:30724984:+	BACH1	27605	chr21:30969890:+	ONLY_REF_SPLICE	NO	0	1	1	0.67	0.0113	0.0113	NEIGHBORS_OVERLAP:+:+:[10260],BACH1-IT1->BACH1_intronic_transcript_1,chr21:30723955-30734215:+,BACH1->BTB_domain_and_CNC_homolog_1,chr21:30566392-31003071:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0226	FALSE	22	22	0	3	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHMP3--LINC00152	1	1	CHMP3	4551	chr2:86790427:-	LINC00152	30364	chr2:87820726:+	ONLY_REF_SPLICE	NO	69	742	0.03	0	0.0113	0.0113	CHMP3->charged_multivesicular_body_protein_3,chr2:86730554-86948245:-,LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0226	FALSE	0	0	0	2	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	1	1	FBRSL1	13618	chr12:133144112:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	78	61	0.03	0.03	0.0113	0.0113	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.03	0.0226	TRUE	0	1	0	1	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FNDC3B--PLD1	1	1	FNDC3B	1144	chr3:171757561:+	PLD1	54130	chr3:171455872:-	ONLY_REF_SPLICE	YES	117	6	0.02	0.25	0.0113	0.0113	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Coronary=1,Esophagus_-_Mucosa=1},FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,PLD1->Oncogene{Bushman},chr3:171318195-171528740:-,phospholipase_D1	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.25	0.0226	TRUE	0	1	0	1	1	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED16--CNN2	1	1	MED16	9051	chr19:879937:-	CNN2	24620	chr19:1036129:+	ONLY_REF_SPLICE	YES	98	545	0.02	0	0.0113	0.0113	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood=[count:2=pct:1.1],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Whole_Blood=3,Liver=1,Esophagus_-_Mucosa=1,Spleen=1},MED16->chr19:867962-893218:-,mediator_complex_subunit_16,CNN2->calponin_2,chr19:1026298-1039068:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0226	FALSE	4	0	1	5	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	1	1	NOC4L	5448	chr12:132633440:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	63	60	0.03	0.03	0.0113	0.0113	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.03	0.0226	TRUE	4	9	0	12	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RASA3--TFDP1	1	1	RASA3	5655	chr13:114806476:-	TFDP1	33315	chr13:114265311:+	ONLY_REF_SPLICE	NO	196	86	0.01	0.02	0.0113	0.0113	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Left_Ventricle=1},RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0113	0.0113	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	FALSE	192	492	57	212	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0113	0.0113	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	FALSE	515	4851	409	746	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A9--SKIV2L2	1	1	SLC38A9	7186	chr5:54993674:-	SKIV2L2	40747	chr5:54635838:+	ONLY_REF_SPLICE	NO	35	173	0.05	0.01	0.0113	0.0113	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},SLC38A9->chr5:54921673-55069022:-,solute_carrier_family_38_member_9,SKIV2L2->Ski2_like_RNA_helicase_2,chr5:54603588-54721409:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.0226	FALSE	0	0	0	2	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SND1--CSNK1A1	1	1	SND1	20493	chr7:127544872:+	CSNK1A1	48182	chr5:148892772:-	ONLY_REF_SPLICE	YES	606	459	0	0	0.0113	0.0113	SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1,CSNK1A1->Oncogene{Bushman},casein_kinase_1_alpha_1,chr5:148871760-148931007:-	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--MAEA	1	1	SPON2	4412	chr4:1195057:-	MAEA	24443	chr4:1305767:+	ONLY_REF_SPLICE	YES	168	20	0.01	0.09	0.0113	0.0113	LOCAL_INVERSION:-:+:[80889],SPON2->chr4:1160720-1202750:-,spondin_2,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.09	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--MAEA	1	1	SPON2	4412	chr4:1195057:-	MAEA	34613	chr4:1326545:+	ONLY_REF_SPLICE	NO	168	290	0.01	0.01	0.0113	0.0113	LOCAL_INVERSION:-:+:[80889],SPON2->chr4:1160720-1202750:-,spondin_2,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	YES	29	0	0.06	1	0.0113	0.0113	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0226	FALSE	28	14	1	23	0	FALSE	ACH-000034
PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB2--ARHGAP15	1	1	ZEB2	5479	chr2:145274845:-	ARHGAP15	64991	chr2:144381702:+	ONLY_REF_SPLICE	YES	55	263	0.04	0.01	0.0113	0.0113	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.08%,GTEx_FI:{Blood=[count:17=pct:9.8],Whole_Blood=[count:16=pct:12.1],Nerve=[count:6=pct:3.5],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=23,Nerve_-_Tibial=9,Spleen=4,Lung=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	PLB985_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0226	FALSE	15	6	0	3	0	FALSE	ACH-000034
C2BBE1_LARGE_INTESTINE	TIMM23B--LINC00843	153	68	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.7469	0.7764	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	C2BBE1_LARGE_INTESTINE	1	1	2.5233	TRUE	508	994	45	981	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	TIMM23--RP11-464F9.1	86	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	717	15	0.12	0.86	0.9819	0.0913	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	C2BBE1_LARGE_INTESTINE	0.12	0.86	1.0732	TRUE	519	3926	326	965	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND4--MT-ATP8	42	0	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4795	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	C2BBE1_LARGE_INTESTINE	1	1	0.4795	FALSE	231	217	16	283	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND6--MT-TE	35	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3996	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	C2BBE1_LARGE_INTESTINE	1	1	0.3996	FALSE	499	1288	110	792	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND6--MT-TE	34	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.3882	0.0114	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	C2BBE1_LARGE_INTESTINE	0.97	1	0.3996	FALSE	499	1288	110	792	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-TA--MT-TC	33	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3768	0.0343	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	C2BBE1_LARGE_INTESTINE	1	1	0.4111	FALSE	462	80	0	856	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	DPP3--SLC46A1	25	15	DPP3	13776	chr11:66264948:+	SLC46A1	20103	chr17:26733641:-	ONLY_REF_SPLICE	YES	366	12	0.1	0.77	0.2854	0.1713	DPP3->chr11:66247484-66277130:+,dipeptidyl_peptidase_3,SLC46A1->chr17:26721661-26734215:-,solute_carrier_family_46_member_1	C2BBE1_LARGE_INTESTINE	0.1	0.77	0.4567	TRUE	0	0	0	2	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	BRCA2--N4BP2L2	23	14	BRCA2	18217	chr13:32921033:+	N4BP2L2	55606	chr13:33018263:-	ONLY_REF_SPLICE	YES	24	1	0.61	0.97	0.2626	0.1598	{Klijn_CCL:Colo-Rectal=1},LOCAL_INVERSION:+:-:[32749],BRCA2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_2,chr13:32889611-32973805:+,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	C2BBE1_LARGE_INTESTINE	0.61	0.97	0.4224	TRUE	0	0	0	2	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	PEX14--PTPN14	26	0	PEX14	3457	chr1:10555378:+	PTPN14	46601	chr1:214531393:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2969	0	{Klijn_CCL:Colo-Rectal=1},PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14,PTPN14->Oncogene{Bushman},chr1:214522039-214725792:-,protein_tyrosine_phosphatase,_non-receptor_type_14	C2BBE1_LARGE_INTESTINE	1	1	0.2969	TRUE	0	0	0	2	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-TA--MT-TC	22	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2512	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	C2BBE1_LARGE_INTESTINE	1	1	0.2512	FALSE	462	80	0	856	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	C15orf57--CBX3	10	20	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	39	28	0.43	0.52	0.1142	0.2283	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	C2BBE1_LARGE_INTESTINE	0.43	0.52	0.3425	TRUE	267	562	48	632	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND6--MT-TE	12	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.137	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	C2BBE1_LARGE_INTESTINE	1	1	0.137	FALSE	499	1288	110	792	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.137	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	C2BBE1_LARGE_INTESTINE	1	1	0.137	TRUE	0	0	0	434	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	RP11-680G10.1--GSE1	7	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	21	1	0.42	0.0799	0.0913	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	C2BBE1_LARGE_INTESTINE	0.42	1	0.1712	TRUE	465	1949	224	605	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-CO3--MT-ATP6	7	7	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	7	1	0.67	0.0799	0.0799	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	C2BBE1_LARGE_INTESTINE	0.67	1	0.1598	FALSE	189	492	56	216	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	C15orf57--CBX3	5	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	37	30	0.31	0.36	0.0571	0.137	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	C2BBE1_LARGE_INTESTINE	0.31	0.36	0.1941	TRUE	267	562	48	632	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-CO3--MT-ATP6	8	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0913	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	C2BBE1_LARGE_INTESTINE	1	1	0.0913	FALSE	189	492	56	216	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	RP11-444D3.1--SOX5	6	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0685	0.0685	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	C2BBE1_LARGE_INTESTINE	0.92	1	0.137	TRUE	477	1352	189	275	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-CO3--MT-ATP6	7	0	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0799	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	C2BBE1_LARGE_INTESTINE	1	1	0.0799	FALSE	189	492	56	216	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-CO3--MT-ATP6	7	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0799	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	C2BBE1_LARGE_INTESTINE	1	1	0.0799	FALSE	189	492	56	216	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	11	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	13	8	0.54	0.65	0.0457	0.1256	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	C2BBE1_LARGE_INTESTINE	0.54	0.65	0.1713	FALSE	189	492	56	216	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND1--MT-RNR2	6	0	MT-ND1	1018	chrM:3324:+	MT-RNR2	6435	chrM:3149:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0685	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	C2BBE1_LARGE_INTESTINE	1	1	0.0685	FALSE	92	22	4	61	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	SCARB1--UBC	6	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0685	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	C2BBE1_LARGE_INTESTINE	1	1	0.0685	TRUE	55	66	6	101	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	11	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	13	6	0.52	0.7	0.0343	0.1256	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	C2BBE1_LARGE_INTESTINE	0.52	0.7	0.1599	FALSE	189	492	56	216	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-TA--MT-TC	5	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0.0343	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	C2BBE1_LARGE_INTESTINE	1	1	0.0914	FALSE	462	80	0	856	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-TA--MT-TC	5	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0.0343	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	C2BBE1_LARGE_INTESTINE	1	1	0.0914	FALSE	462	80	0	856	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	10	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	7	64	0.65	0.17	0.0343	0.1142	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	C2BBE1_LARGE_INTESTINE	0.17	0.65	0.1485	FALSE	189	492	56	216	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND5--MT-TL2	5	2	MT-ND5	1110	chrM:12446:+	MT-TL2	5833	chrM:12286:+	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0571	0.0228	LOCAL_REARRANGEMENT:+:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-TL2->chrM:12266-12336:+,mitochondrially_encoded_tRNA_leucine_2_(CUN)	C2BBE1_LARGE_INTESTINE	0.78	1	0.0799	FALSE	3	9	1	5	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	17873	0	0	1	0.0571	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	C2BBE1_LARGE_INTESTINE	0	1	0.0685	FALSE	231	205	14	283	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0571	0.0114	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	C2BBE1_LARGE_INTESTINE	1	1	0.0685	FALSE	292	1546	117	613	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	ANP32B--SEPT7	5	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	C2BBE1_LARGE_INTESTINE	1	1	0.0571	TRUE	1	1	0	18	1	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	C2BBE1_LARGE_INTESTINE	1	1	0.0571	FALSE	189	492	56	216	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND6--MT-TE	4	4	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0457	0.0457	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	C2BBE1_LARGE_INTESTINE	0.89	1	0.0914	FALSE	499	1288	110	792	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	BRCA2--N4BP2L2	1	14	BRCA2	18217	chr13:32921033:+	N4BP2L2	54484	chr13:33020617:-	ONLY_REF_SPLICE	YES	24	0	0.38	1	0.0114	0.1598	{Klijn_CCL:Colo-Rectal=1},LOCAL_INVERSION:+:-:[32749],BRCA2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_2,chr13:32889611-32973805:+,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	C2BBE1_LARGE_INTESTINE	0.38	1	0.1712	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND5--MT-TL2	4	2	MT-ND5	1122	chrM:12458:+	MT-TL2	5833	chrM:12286:+	INCL_NON_REF_SPLICE	YES	5	0	0.55	1	0.0457	0.0228	LOCAL_REARRANGEMENT:+:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-TL2->chrM:12266-12336:+,mitochondrially_encoded_tRNA_leucine_2_(CUN)	C2BBE1_LARGE_INTESTINE	0.55	1	0.0685	FALSE	3	9	1	5	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND6--MT-TE	4	2	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0.0228	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	C2BBE1_LARGE_INTESTINE	1	1	0.0685	FALSE	499	1288	110	792	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	RP11-680G10.1--GSE1	2	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	17	1	0.41	0.0228	0.1142	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	C2BBE1_LARGE_INTESTINE	0.41	1	0.137	TRUE	458	1351	185	561	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND6--MT-TE	3	5	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0.0571	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	C2BBE1_LARGE_INTESTINE	1	1	0.0914	FALSE	499	1288	110	792	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND6--MT-TE	4	1	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0457	0.0114	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	C2BBE1_LARGE_INTESTINE	0.83	1	0.0571	FALSE	499	1288	110	792	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	0	MT-CO3	1181	chrM:9387:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	C2BBE1_LARGE_INTESTINE	1	1	0.0457	FALSE	189	492	56	216	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND1--MT-RNR2	4	0	MT-ND1	1267	chrM:3573:+	MT-RNR2	6490	chrM:3204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	C2BBE1_LARGE_INTESTINE	1	1	0.0457	FALSE	92	21	4	61	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND6--MT-TE	3	4	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0343	0.0457	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	C2BBE1_LARGE_INTESTINE	0.88	1	0.08	FALSE	499	1288	110	792	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	C2BBE1_LARGE_INTESTINE	1	1	0.0457	FALSE	499	1288	110	792	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	NPM1P24--SET	4	0	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	C2BBE1_LARGE_INTESTINE	1	1	0.0457	TRUE	0	0	0	434	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	C2BBE1_LARGE_INTESTINE	1	1	0.0457	TRUE	0	0	0	434	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	RP11-444D3.1--SOX5	3	4	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	1	1	0.88	0.0343	0.0457	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	C2BBE1_LARGE_INTESTINE	0.88	1	0.08	TRUE	274	363	69	150	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND6--MT-TE	3	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0.0343	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	C2BBE1_LARGE_INTESTINE	1	1	0.0686	FALSE	499	1288	110	792	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0343	0.0343	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	C2BBE1_LARGE_INTESTINE	0.75	1	0.0686	FALSE	407	2205	196	549	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	2	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	17643	0	0	1	0.0343	0.0228	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	C2BBE1_LARGE_INTESTINE	0	1	0.0571	FALSE	231	217	16	283	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	DPP3--SLC46A1	3	1	DPP3	13776	chr11:66264948:+	SLC46A1	20729	chr17:26733015:-	ONLY_REF_SPLICE	YES	366	190	0.01	0.02	0.0343	0.0114	DPP3->chr11:66247484-66277130:+,dipeptidyl_peptidase_3,SLC46A1->chr17:26721661-26734215:-,solute_carrier_family_46_member_1	C2BBE1_LARGE_INTESTINE	0.01	0.02	0.0457	FALSE	0	0	0	2	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	1	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	7	0	0.36	1	0.0343	0.0114	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	C2BBE1_LARGE_INTESTINE	0.36	1	0.0457	FALSE	189	492	56	216	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	1	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0.0114	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	C2BBE1_LARGE_INTESTINE	1	1	0.0457	FALSE	189	492	56	216	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	1	MT-CO3	1192	chrM:9398:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	13	0	0.24	1	0.0343	0.0114	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	C2BBE1_LARGE_INTESTINE	0.24	1	0.0457	FALSE	189	492	56	216	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND6--MT-TE	3	1	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0343	0.0114	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	C2BBE1_LARGE_INTESTINE	0.8	1	0.0457	FALSE	499	1288	110	792	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	RP11-1057B8.2--RP11-452N4.1	3	1	RP11-1057B8.2	3793	chr8:135893523:+	RP11-452N4.1	8797	chr8:136300339:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0.0114	RP11-1057B8.2->chr8:135862178-135894142:+,RP11-452N4.1->chr8:136246374-136311962:+	C2BBE1_LARGE_INTESTINE	1	1	0.0457	TRUE	0	0	0	3	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.67	0.8	0.0343	0.0114	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	C2BBE1_LARGE_INTESTINE	0.67	0.8	0.0457	FALSE	515	4851	409	746	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	0	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	C2BBE1_LARGE_INTESTINE	1	1	0.0343	FALSE	189	492	56	216	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	C2BBE1_LARGE_INTESTINE	1	1	0.0343	FALSE	230	198	14	283	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	C2BBE1_LARGE_INTESTINE	1	1	0.0343	FALSE	231	217	16	283	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	C2BBE1_LARGE_INTESTINE	1	1	0.0343	TRUE	0	0	0	434	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	YWHAE--CRK	2	3	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	2866	103	0	0.05	0.0228	0.0343	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	C2BBE1_LARGE_INTESTINE	0	0.05	0.0571	FALSE	6	50	7	115	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0228	0.0228	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	C2BBE1_LARGE_INTESTINE	0.18	1	0.0456	FALSE	164	806	69	479	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	METAP1--EIF4E	2	1	METAP1	1248	chr4:99917018:+	EIF4E	28557	chr4:99823133:-	ONLY_REF_SPLICE	YES	290	18	0.01	0.14	0.0228	0.0114	{Klijn_CCL:Sarcomatoid=1,Stomach=1},LOCAL_INVERSION:+:-:[64983],METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1,EIF4E->Oncogene{Bushman},chr4:99792835-99851788:-,eukaryotic_translation_initiation_factor_4E	C2BBE1_LARGE_INTESTINE	0.01	0.14	0.0342	FALSE	0	1	0	7	1	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	N4BP2L2--BRCA2	2	1	N4BP2L2	14548	chr13:33054727:-	BRCA2	50512	chr13:32944539:+	ONLY_REF_SPLICE	YES	0	42	1	0.07	0.0228	0.0114	LOCAL_INVERSION:-:+:[32749],N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-,BRCA2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_2,chr13:32889611-32973805:+	C2BBE1_LARGE_INTESTINE	0.07	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0.0114	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	C2BBE1_LARGE_INTESTINE	1	1	0.0342	TRUE	62	24	1	171	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	ALG11--ATP7B	2	0	ALG11	1065	chr13:52586598:+	ATP7B	14220	chr13:52549304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	LOCAL_INVERSION:+:-:[904],ALG11->ALG11,_alpha-1,2-mannosyltransferase,chr13:52586534-52603800:+,ATP7B->ATPase_copper_transporting_beta,chr13:52506809-52585630:-	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	2	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	ATRX--SEPSECS	2	0	ATRX	8873	chrX:76944311:-	SEPSECS	48732	chr4:25160729:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,SEPSECS->Sep_(O-phosphoserine)_tRNA:Sec_(selenocysteine)_tRNA_synthase,chr4:25121627-25162204:-	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	CSTF3-AS1--VAMP3	2	0	CSTF3-AS1	1125	chr11:33183327:+	VAMP3	10940	chr1:7837220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	CSTF3-AS1->CSTF3_antisense_RNA_1_(head_to_head),chr11:33183203-33213144:+,VAMP3->chr1:7831329-7841492:+,vesicle_associated_membrane_protein_3	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	MBTD1--UTP18	2	0	MBTD1	2021	chr17:49336504:-	UTP18	33077	chr17:49357366:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},LOCAL_INVERSION:-:+:[365],MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1,UTP18->UTP18,_small_subunit_processome_component,chr17:49337889-49375297:+	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	OGFR--SERPINB1	2	0	OGFR	4491	chr20:61439677:+	SERPINB1	19428	chr6:2834246:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	OGFR->chr20:61436187-61445352:+,opioid_growth_factor_receptor,SERPINB1->Oncogene{Bushman},chr6:2832566-2842240:-,serpin_family_B_member_1	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	RPS6KA3--DDX3X	2	0	RPS6KA3	1842	chrX:20284682:-	DDX3X	49242	chrX:41217086:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},RPS6KA3->chrX:20168029-20285523:-,ribosomal_protein_S6_kinase_A3,DDX3X->DEAD-box_helicase_3,_X-linked,chrX:41192651-41223725:+	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	SAR1A--ANXA7	2	0	SAR1A	1111	chr10:71930169:-	ANXA7	25911	chr10:75147541:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},SAR1A->chr10:71907045-71930279:-,secretion_associated_Ras_related_GTPase_1A,ANXA7->annexin_A7,chr10:75134859-75173834:-	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	SLC25A13--ACN9	2	0	SLC25A13	5666	chr7:95864114:-	ACN9	28192	chr7:96810324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13,ACN9->chr7:96745902-96811075:+	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	UBXN7--TFRC	2	0	UBXN7	1148	chr3:196159198:-	TFRC	29021	chr3:195803993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	UBXN7->UBX_domain_protein_7,chr3:196074533-196159345:-,TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	ZNF138--SP1	2	0	ZNF138	3779	chr7:64276031:+	SP1	12000	chr12:53775443:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	HGNC_GENEFAM,PROTCLUST,ZNF138->chr7:64254766-64294054:+,zinc_finger_protein_138,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	C2BBE1_LARGE_INTESTINE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	TNFAIP8--HSD17B4	1	3	TNFAIP8	1216	chr5:118604602:+	HSD17B4	22456	chr5:118809603:+	ONLY_REF_SPLICE	NO	26	272	0.13	0.01	0.0114	0.0343	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	C2BBE1_LARGE_INTESTINE	0.01	0.13	0.0457	FALSE	0	2	0	7	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	N4BP2L2--BRCA2	1	2	N4BP2L2	15937	chr13:33052024:-	BRCA2	50512	chr13:32944539:+	ONLY_REF_SPLICE	YES	0	42	1	0.07	0.0114	0.0228	LOCAL_INVERSION:-:+:[32749],N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-,BRCA2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_2,chr13:32889611-32973805:+	C2BBE1_LARGE_INTESTINE	0.07	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	CSRP2BP--SNX5	1	1	CSRP2BP	8782	chr20:18143589:+	SNX5	21735	chr20:17937681:-	ONLY_REF_SPLICE	YES	276	799	0.01	0	0.0114	0.0114	CSRP2BP->Oncogene{Bushman},chr20:18118762-18169031:+,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	C2BBE1_LARGE_INTESTINE	0	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	DAGLB--RAC1	1	1	DAGLB	2489	chr7:6487379:-	RAC1	26262	chr7:6431555:+	ONLY_REF_SPLICE	YES	66	221	0.03	0.01	0.0114	0.0114	LOCAL_INVERSION:-:+:[5149],DAGLB->chr7:6448757-6523821:-,diacylglycerol_lipase_beta,RAC1->ArcherDX_panel,FoundationOne_panel,chr7:6414154-6443608:+,ras-related_C3_botulinum_toxin_substrate_1_(rho_family,_small_GTP_binding_protein_Rac1)	C2BBE1_LARGE_INTESTINE	0.01	0.03	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	FGFR1OP2--ASUN	1	1	FGFR1OP2	1328	chr12:27091643:+	ASUN	19473	chr12:27081838:-	ONLY_REF_SPLICE	YES	166	82	0.01	0.02	0.0114	0.0114	LOCAL_INVERSION:+:-:[57],FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	C2BBE1_LARGE_INTESTINE	0.01	0.02	0.0228	FALSE	0	2	0	3	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	LIPC--ADAM10	1	1	LIPC	3544	chr15:58724319:+	ADAM10	32432	chr15:58933029:-	ONLY_REF_SPLICE	YES	77	197	0.03	0.01	0.0114	0.0114	LOCAL_INVERSION:+:-:[26252],LIPC->chr15:58702768-58861151:+,lipase_C,_hepatic_type,ADAM10->ADAM_metallopeptidase_domain_10,chr15:58887403-59042177:-	C2BBE1_LARGE_INTESTINE	0.01	0.03	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.15	1	0.0114	0.0114	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	C2BBE1_LARGE_INTESTINE	0.15	1	0.0228	FALSE	125	705	46	456	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	RBM23--MRPL52	1	1	RBM23	9267	chr14:23375404:-	MRPL52	21923	chr14:23303381:+	ONLY_REF_SPLICE	YES	212	228	0.01	0.01	0.0114	0.0114	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_INVERSION:-:+:[65608],RBM23->RNA_binding_motif_protein_23,chr14:23369854-23388393:-,MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	C2BBE1_LARGE_INTESTINE	0.01	0.01	0.0228	FALSE	0	3	0	2	1	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	SLC2A9--MLH1	1	1	SLC2A9	20524	chr4:9889191:-	MLH1	36826	chr3:37045892:+	ONLY_REF_SPLICE	YES	35	189	0.05	0.01	0.0114	0.0114	SLC2A9->chr4:9772777-10056560:-,solute_carrier_family_2_member_9,MLH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr3:37034823-37107380:+,mutL_homolog_1	C2BBE1_LARGE_INTESTINE	0.01	0.05	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000009
C2BBE1_LARGE_INTESTINE	TMEM206--GUCA2B	1	1	TMEM206	8682	chr1:212550904:-	GUCA2B	17125	chr1:42620351:+	ONLY_REF_SPLICE	YES	33	1	0.06	0.67	0.0114	0.0114	TMEM206->chr1:212537273-212588243:-,transmembrane_protein_206,GUCA2B->chr1:42619092-42621495:+,guanylate_cyclase_activator_2B	C2BBE1_LARGE_INTESTINE	0.06	0.67	0.0228	TRUE	0	0	0	2	0	TRUE	ACH-000009
C2BBE1_LARGE_INTESTINE	USP34--XPO1	1	1	USP34	27982	chr2:61523935:-	XPO1	88876	chr2:61724142:-	ONLY_REF_SPLICE	NO	161	601	0.01	0	0.0114	0.0114	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	C2BBE1_LARGE_INTESTINE	0	0.01	0.0228	FALSE	0	1	0	1	0	FALSE	ACH-000009
KPNRTBM1_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	114	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.8977	0.5161	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KPNRTBM1_AUTONOMIC_GANGLIA	1	1	2.4138	TRUE	508	994	45	981	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	61	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	165	1	0.28	0.98	1.0155	0.0499	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KPNRTBM1_AUTONOMIC_GANGLIA	0.28	0.98	1.0654	TRUE	519	3926	326	965	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	ZNF654--HMGB2	59	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9822	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KPNRTBM1_AUTONOMIC_GANGLIA	1	1	0.9822	TRUE	0	0	0	518	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	MT-TA--MT-TC	22	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3662	0.0333	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KPNRTBM1_AUTONOMIC_GANGLIA	1	1	0.3995	FALSE	462	80	0	856	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	OR51S1--TP53I11	18	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2996	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	KPNRTBM1_AUTONOMIC_GANGLIA	1	1	0.2996	TRUE	402	216	10	229	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	15	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2497	0.0166	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPNRTBM1_AUTONOMIC_GANGLIA	1	1	0.2663	FALSE	499	1288	110	792	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	12	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.1998	0.0499	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPNRTBM1_AUTONOMIC_GANGLIA	0.88	1	0.2497	FALSE	499	1288	110	792	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	10	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.61	0.1665	0.0666	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KPNRTBM1_AUTONOMIC_GANGLIA	0.61	1	0.2331	TRUE	458	1351	185	561	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	9	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1498	0.0166	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPNRTBM1_AUTONOMIC_GANGLIA	1	1	0.1664	FALSE	499	1288	110	792	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	8	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.1332	0.0333	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KPNRTBM1_AUTONOMIC_GANGLIA	0.91	1	0.1665	FALSE	292	1546	117	613	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	8	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	64	1	0.12	0.1332	0.0166	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KPNRTBM1_AUTONOMIC_GANGLIA	0.12	1	0.1498	TRUE	465	1949	224	605	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	6	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	29	0	0.29	1	0.0999	0.0999	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KPNRTBM1_AUTONOMIC_GANGLIA	0.29	1	0.1998	FALSE	164	806	69	479	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	7	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0499	0.1165	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPNRTBM1_AUTONOMIC_GANGLIA	0.83	1	0.1664	FALSE	499	1288	110	792	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	RP11-120D5.1--MID1	4	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	2	0.88	0.78	0.0666	0.0499	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KPNRTBM1_AUTONOMIC_GANGLIA	0.78	0.88	0.1165	FALSE	16	356	14	466	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	3	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0.0499	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPNRTBM1_AUTONOMIC_GANGLIA	1	1	0.0998	FALSE	499	1288	110	792	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	MT-TA--MT-TC	3	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0.0333	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KPNRTBM1_AUTONOMIC_GANGLIA	1	1	0.0832	FALSE	462	80	0	856	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	CPSF6--SRSF1	3	1	CPSF6	11046	chr12:69656342:+	SRSF1	22199	chr17:56082402:-	ONLY_REF_SPLICE	YES	108	589	0.04	0.01	0.0499	0.0166	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	KPNRTBM1_AUTONOMIC_GANGLIA	0.01	0.04	0.0665	FALSE	2	7	0	12	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	2	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.28	1	0.0333	0.0832	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KPNRTBM1_AUTONOMIC_GANGLIA	0.28	1	0.1165	FALSE	125	705	46	456	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	WI2-1896O14.1--RP11-353N4.1	3	1	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0499	0.0166	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	KPNRTBM1_AUTONOMIC_GANGLIA	1	1	0.0665	TRUE	361	258	24	38	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	CPSF6--C9orf3	2	2	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	108	91	0.04	0.04	0.0333	0.0333	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	KPNRTBM1_AUTONOMIC_GANGLIA	0.04	0.04	0.0666	TRUE	53	99	2	44	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	EPB41L2--HDAC2	2	0	EPB41L2	1168	chr6:131384295:-	HDAC2	56114	chr6:114267312:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0333	0	EPB41L2->chr6:131160487-131384462:-,erythrocyte_membrane_protein_band_4.1_like_2,HDAC2->Oncogene{Bushman},chr6:114254192-114332472:-,histone_deacetylase_2	KPNRTBM1_AUTONOMIC_GANGLIA	1	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	GATS--PILRB	2	0	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0333	0	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	KPNRTBM1_AUTONOMIC_GANGLIA	1	1	0.0333	TRUE	57	41	2	35	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	TXNIP--SRP9	2	0	TXNIP	1584	chr1:145439052:+	SRP9	8274	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0333	0	TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	KPNRTBM1_AUTONOMIC_GANGLIA	1	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	FGF14-IT1--FGF14	1	1	FGF14-IT1	3717	chr13:103018795:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	10	1	0.17	0.0166	0.0166	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	KPNRTBM1_AUTONOMIC_GANGLIA	0.17	1	0.0332	TRUE	80	58	2	10	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	1	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	18	0	0.1	1	0.0166	0.0166	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	KPNRTBM1_AUTONOMIC_GANGLIA	0.1	1	0.0332	FALSE	56	216	12	147	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	2	0.67	0.5	0.0166	0.0166	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KPNRTBM1_AUTONOMIC_GANGLIA	0.5	0.67	0.0332	FALSE	0	48	1	163	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0.0166	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KPNRTBM1_AUTONOMIC_GANGLIA	1	1	0.0332	FALSE	416	2512	207	587	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	24436	chr10:114650725:+	ONLY_REF_SPLICE	YES	48	0	0.04	1	0.0166	0.0166	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	KPNRTBM1_AUTONOMIC_GANGLIA	0.04	1	0.0332	FALSE	21	3	0	16	0	FALSE	ACH-000345
KPNRTBM1_AUTONOMIC_GANGLIA	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	48	0	0.04	1	0.0166	0.0166	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	KPNRTBM1_AUTONOMIC_GANGLIA	0.04	1	0.0332	FALSE	272	151	14	158	0	FALSE	ACH-000345
DMS153_LUNG	TIMM23B--LINC00843	113	53	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2428	0.5829	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DMS153_LUNG	1	1	1.8257	TRUE	508	994	45	981	0	FALSE	ACH-000594
DMS153_LUNG	FSCN1--AC092171.4	103	88	FSCN1	6576	chr7:5645230:+	AC092171.4	11198	chr7:5516000:+	INCL_NON_REF_SPLICE	YES	184	38	0.51	0.83	1.1329	0.9679	FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1,AC092171.4->chr7:5515435-5519442:+	DMS153_LUNG	0.51	0.83	2.1008	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	NF1--AC084809.2	71	41	NF1	4721	chr17:29486111:+	AC084809.2	78700	chr17:31204862:+	ONLY_REF_SPLICE	YES	75	1	0.6	0.99	0.7809	0.4509	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,AC084809.2->chr17:31203777-31205655:+	DMS153_LUNG	0.6	0.99	1.2318	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	TIMM23--RP11-464F9.1	69	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	352	22	0.17	0.77	0.7589	0.044	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DMS153_LUNG	0.17	0.77	0.8029	TRUE	519	3926	326	965	0	FALSE	ACH-000594
DMS153_LUNG	FSCN1--AC092171.4	44	37	FSCN1	6361	chr7:5645015:+	AC092171.4	12923	chr7:5517725:+	INCL_NON_REF_SPLICE	YES	206	87	0.28	0.48	0.4839	0.4069	FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1,AC092171.4->chr7:5515435-5519442:+	DMS153_LUNG	0.28	0.48	0.8908	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	RP11-123O10.4--GRIP1	45	26	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	18	1	0.8	0.4949	0.286	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DMS153_LUNG	0.8	1	0.7809	FALSE	416	2512	207	587	0	FALSE	ACH-000594
DMS153_LUNG	RP4-565E6.1--HYDIN	35	15	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	4	1	0.93	0.3849	0.165	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	DMS153_LUNG	0.93	1	0.5499	TRUE	456	1387	91	133	0	FALSE	ACH-000594
DMS153_LUNG	MAF--RP11-679B19.2	31	30	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.341	0.33	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	DMS153_LUNG	1	1	0.671	TRUE	48	25	3	38	0	FALSE	ACH-000594
DMS153_LUNG	ZNF654--HMGB2	37	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4069	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	DMS153_LUNG	1	1	0.4069	TRUE	0	0	0	518	0	FALSE	ACH-000594
DMS153_LUNG	OR51S1--TP53I11	35	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3849	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	DMS153_LUNG	1	1	0.3849	TRUE	402	216	10	229	0	FALSE	ACH-000594
DMS153_LUNG	MT-TA--MT-TC	33	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.363	0.011	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DMS153_LUNG	1	1	0.374	FALSE	462	80	0	856	0	FALSE	ACH-000594
DMS153_LUNG	PPIL3--AGAP1	27	19	PPIL3	4465	chr2:201750421:-	AGAP1	29413	chr2:236791989:+	ONLY_REF_SPLICE	YES	85	68	0.35	0.4	0.297	0.209	PPIL3->chr2:201735630-201754026:-,peptidylprolyl_isomerase_like_3,AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+	DMS153_LUNG	0.35	0.4	0.506	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	FSCN1--AC092171.4	15	36	FSCN1	6349	chr7:5645003:+	AC092171.4	12923	chr7:5517725:+	INCL_NON_REF_SPLICE	YES	198	87	0.2	0.37	0.165	0.3959	FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1,AC092171.4->chr7:5515435-5519442:+	DMS153_LUNG	0.2	0.37	0.5609	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	C15orf57--CBX3	20	15	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	46	37	0.43	0.49	0.22	0.165	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DMS153_LUNG	0.43	0.49	0.385	TRUE	267	562	48	632	0	FALSE	ACH-000594
DMS153_LUNG	LINC01014--KCNMB2	23	3	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	7	68	0.79	0.28	0.253	0.033	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	DMS153_LUNG	0.28	0.79	0.286	FALSE	12	33	18	33	0	FALSE	ACH-000594
DMS153_LUNG	LINC01014--KCNMB2	22	3	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	7	71	0.78	0.26	0.242	0.033	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	DMS153_LUNG	0.26	0.78	0.275	FALSE	11	60	26	37	0	FALSE	ACH-000594
DMS153_LUNG	RP11-319G9.5--WWOX	20	7	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	40	1	0.4	0.22	0.077	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	DMS153_LUNG	0.4	1	0.297	FALSE	154	425	28	76	0	FALSE	ACH-000594
DMS153_LUNG	MT-ND6--MT-TE	20	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.22	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS153_LUNG	1	1	0.22	FALSE	499	1288	110	792	0	FALSE	ACH-000594
DMS153_LUNG	MT-ND6--MT-TE	19	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.209	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS153_LUNG	1	1	0.209	FALSE	499	1288	110	792	0	FALSE	ACH-000594
DMS153_LUNG	PUM1--MACF1	12	23	PUM1	6137	chr1:31501643:-	MACF1	35481	chr1:39549839:+	ONLY_REF_SPLICE	YES	405	0	0.08	1	0.132	0.253	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	DMS153_LUNG	0.08	1	0.385	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	NF1--EPHB1	14	11	NF1	9263	chr17:29509683:+	EPHB1	83568	chr3:134498580:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.154	0.121	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,EPHB1->ArcherDX_panel,EPH_receptor_B1,FoundationOne_panel,chr3:134316643-134979309:+	DMS153_LUNG	1	1	0.275	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	CTD-2008L17.1--RP11-456O19.2	14	10	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	4	1	0.86	0.96	0.154	0.11	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	DMS153_LUNG	0.86	0.96	0.264	FALSE	33	240	4	98	0	FALSE	ACH-000594
DMS153_LUNG	MT-ND4--MT-ND4L	3	31	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	8	0	0.81	1	0.033	0.341	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS153_LUNG	0.81	1	0.374	FALSE	344	826	44	306	0	FALSE	ACH-000594
DMS153_LUNG	MT-ND4--MT-ND4L	10	1	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	48	0	0.19	1	0.11	0.011	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS153_LUNG	0.19	1	0.121	FALSE	344	827	44	306	0	FALSE	ACH-000594
DMS153_LUNG	PPIL3--AGAP1	4	21	PPIL3	4465	chr2:201750421:-	AGAP1	27896	chr2:236761330:+	ONLY_REF_SPLICE	YES	85	78	0.23	0.24	0.044	0.231	PPIL3->chr2:201735630-201754026:-,peptidylprolyl_isomerase_like_3,AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+	DMS153_LUNG	0.23	0.24	0.275	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	MT-ND4--MT-ND4L	5	15	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.87	1	0.055	0.165	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS153_LUNG	0.87	1	0.22	FALSE	344	821	44	306	0	FALSE	ACH-000594
DMS153_LUNG	RP11-120D5.1--MID1	7	7	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	43	0.93	0.25	0.077	0.077	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	DMS153_LUNG	0.25	0.93	0.154	FALSE	16	356	14	466	0	FALSE	ACH-000594
DMS153_LUNG	MT-ND4--MT-ND4L	3	21	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	52	0	0.32	1	0.033	0.231	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS153_LUNG	0.32	1	0.264	FALSE	344	827	44	306	0	FALSE	ACH-000594
DMS153_LUNG	RP11-680G10.1--GSE1	7	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	15	1	0.44	0.077	0.055	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DMS153_LUNG	0.44	1	0.132	TRUE	458	1351	185	561	0	FALSE	ACH-000594
DMS153_LUNG	MT-CO3--MT-ATP6	8	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.088	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS153_LUNG	1	1	0.088	FALSE	189	492	56	216	0	FALSE	ACH-000594
DMS153_LUNG	PUM1--MACF1	2	24	PUM1	6137	chr1:31501643:-	MACF1	34677	chr1:39549035:+	ONLY_REF_SPLICE	YES	405	0	0.06	1	0.022	0.264	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	DMS153_LUNG	0.06	1	0.286	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	RP11-123O10.4--GRIP1	4	14	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	22	1	0.45	0.044	0.154	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DMS153_LUNG	0.45	1	0.198	FALSE	93	270	15	244	0	FALSE	ACH-000594
DMS153_LUNG	GNGT1--AC002076.10	6	5	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	9	0	0.55	1	0.066	0.055	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	DMS153_LUNG	0.55	1	0.121	FALSE	0	28	0	37	0	FALSE	ACH-000594
DMS153_LUNG	MT-ND4--MT-ND4L	5	8	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	534	0	0.02	1	0.055	0.088	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS153_LUNG	0.02	1	0.143	FALSE	344	827	44	306	0	FALSE	ACH-000594
DMS153_LUNG	MT-ND4--MT-ND4L	3	11	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	3	0	0.82	1	0.033	0.121	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS153_LUNG	0.82	1	0.154	FALSE	344	821	44	306	0	FALSE	ACH-000594
DMS153_LUNG	MT-ND4--MT-ND4L	4	7	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	355	0	0.03	1	0.044	0.077	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS153_LUNG	0.03	1	0.121	FALSE	344	827	44	306	0	FALSE	ACH-000594
DMS153_LUNG	AP000525.9--LA16c-60G3.6	5	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	16	0	0.27	1	0.055	0.011	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	DMS153_LUNG	0.27	1	0.066	TRUE	0	42	0	133	42	FALSE	ACH-000594
DMS153_LUNG	GNGT1--AC002076.10	4	5	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	13	0	0.41	1	0.044	0.055	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	DMS153_LUNG	0.41	1	0.099	FALSE	0	10	0	30	0	FALSE	ACH-000594
DMS153_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS153_LUNG	1	1	0.055	FALSE	499	1288	110	792	0	FALSE	ACH-000594
DMS153_LUNG	C15orf57--CBX3	3	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	44	37	0.17	0.2	0.033	0.066	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DMS153_LUNG	0.17	0.2	0.099	TRUE	267	562	48	632	0	FALSE	ACH-000594
DMS153_LUNG	MT-ND4--MT-ND4L	3	6	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	17	0	0.35	1	0.033	0.066	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS153_LUNG	0.35	1	0.099	FALSE	344	826	44	306	0	FALSE	ACH-000594
DMS153_LUNG	CASC9--RP11-300E4.2	4	1	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	55	0	0.08	1	0.044	0.011	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	DMS153_LUNG	0.08	1	0.055	TRUE	0	23	0	19	23	TRUE	ACH-000594
DMS153_LUNG	MT-CO3--MT-ATP6	4	1	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	10	0.83	0.33	0.044	0.011	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS153_LUNG	0.33	0.83	0.055	FALSE	189	492	56	216	0	FALSE	ACH-000594
DMS153_LUNG	MT-ND6--MT-TE	4	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.044	0.011	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS153_LUNG	0.83	1	0.055	FALSE	499	1288	110	792	0	FALSE	ACH-000594
DMS153_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS153_LUNG	1	1	0.044	FALSE	189	492	56	216	0	FALSE	ACH-000594
DMS153_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS153_LUNG	1	1	0.044	FALSE	499	1288	110	792	0	FALSE	ACH-000594
DMS153_LUNG	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.044	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DMS153_LUNG	1	1	0.044	FALSE	292	1546	117	613	0	FALSE	ACH-000594
DMS153_LUNG	CTD-2008L17.1--RP11-456O19.2	1	10	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	13011	chr18:53755642:+	ONLY_REF_SPLICE	NO	4	1	0.73	0.92	0.011	0.11	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	DMS153_LUNG	0.73	0.92	0.121	FALSE	0	12	0	8	0	FALSE	ACH-000594
DMS153_LUNG	CTD-2008L17.1--RP11-456O19.2	1	10	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	NO	4	0	0.73	1	0.011	0.11	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	DMS153_LUNG	0.73	1	0.121	FALSE	20	187	4	79	0	FALSE	ACH-000594
DMS153_LUNG	RP11-444D3.1--SOX5	3	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	5	1	0.44	0.033	0.011	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	DMS153_LUNG	0.44	1	0.044	TRUE	477	1352	189	275	0	FALSE	ACH-000594
DMS153_LUNG	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.033	0.011	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DMS153_LUNG	0.8	1	0.044	FALSE	515	4851	409	746	0	FALSE	ACH-000594
DMS153_LUNG	AGBL4--AGBL4-IT1	3	0	AGBL4	3399	chr1:50162985:-	AGBL4-IT1	30507	chr1:49840016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	NEIGHBORS_OVERLAP:-:-:[97884],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,AGBL4-IT1->AGBL4_intronic_transcript_1,chr1:49839873-49937757:-	DMS153_LUNG	1	1	0.033	FALSE	75	131	5	14	0	FALSE	ACH-000594
DMS153_LUNG	CASC9--RP11-300E4.2	3	0	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	DMS153_LUNG	1	1	0.033	TRUE	0	12	0	10	12	TRUE	ACH-000594
DMS153_LUNG	DTL--INTS7	3	0	DTL	4858	chr1:212220759:+	INTS7	23447	chr1:212194554:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	LOCAL_INVERSION:+:-:[35],DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,INTS7->chr1:212113741-212208884:-,integrator_complex_subunit_7	DMS153_LUNG	1	1	0.033	TRUE	0	0	0	2	0	TRUE	ACH-000594
DMS153_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DMS153_LUNG	1	1	0.033	FALSE	230	198	14	283	0	FALSE	ACH-000594
DMS153_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS153_LUNG	1	1	0.033	FALSE	499	1288	110	792	0	FALSE	ACH-000594
DMS153_LUNG	RP11-680G10.1--GSE1	2	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	146	1	0.04	0.022	0.044	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DMS153_LUNG	0.04	1	0.066	TRUE	465	1949	224	605	0	FALSE	ACH-000594
DMS153_LUNG	RP11-681L8.1--STPG2	3	0	RP11-681L8.1	1346	chr4:98554629:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	DMS153_LUNG	1	1	0.033	TRUE	0	6	0	6	6	TRUE	ACH-000594
DMS153_LUNG	RP4-565E6.1--HYDIN	2	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	17	1	0.26	0.022	0.044	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	DMS153_LUNG	0.26	1	0.066	TRUE	84	87	4	41	0	FALSE	ACH-000594
DMS153_LUNG	NF1--EPHB1	2	3	NF1	9263	chr17:29509683:+	EPHB1	91094	chr3:134644658:+	ONLY_REF_SPLICE	YES	0	35	1	0.12	0.022	0.033	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,EPHB1->ArcherDX_panel,EPH_receptor_B1,FoundationOne_panel,chr3:134316643-134979309:+	DMS153_LUNG	0.12	1	0.055	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	CPSF6--C9orf3	2	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	245	313	0.01	0.01	0.022	0.011	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	DMS153_LUNG	0.01	0.01	0.033	FALSE	53	99	2	44	0	FALSE	ACH-000594
DMS153_LUNG	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0.011	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DMS153_LUNG	1	1	0.033	FALSE	467	2173	244	435	0	FALSE	ACH-000594
DMS153_LUNG	SPAG16--VWC2L	2	1	SPAG16	24747	chr2:215013990:+	VWC2L	37163	chr2:215301353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0.011	NEIGHBORS[564],SPAG16->chr2:214149113-215275225:+,sperm_associated_antigen_16,VWC2L->chr2:215275789-215443683:+,von_Willebrand_factor_C_domain_containing_protein_2-like	DMS153_LUNG	1	1	0.033	FALSE	3	0	0	4	0	FALSE	ACH-000594
DMS153_LUNG	AKAP2--ATP6V1H	2	0	AKAP2	3257	chr9:112642961:+	ATP6V1H	41935	chr8:54684727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	AKAP2->A-kinase_anchoring_protein_2,chr9:112542769-112934792:+,ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	CUX1--ADD1	2	0	CUX1	1415	chr7:101459373:+	ADD1	64174	chr4:2877623:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,ADD1->adducin_1,chr4:2845584-2931803:+	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	CYP20A1--TRAPPC8	2	0	CYP20A1	5582	chr2:204131404:+	TRAPPC8	52687	chr18:29410952:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	CYP20A1->chr2:204103663-204163009:+,cytochrome_P450_family_20_subfamily_A_member_1,TRAPPC8->chr18:29409136-29533099:-,trafficking_protein_particle_complex_8	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	DNAJC6--USP24	2	0	DNAJC6	2273	chr1:65720332:+	USP24	78975	chr1:55551711:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+,USP24->Oncogene{Bushman},chr1:55532032-55680786:-,ubiquitin_specific_peptidase_24	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	GNPAT--FAM122B	2	0	GNPAT	3610	chr1:231396429:+	FAM122B	28320	chrX:133905384:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GNPAT->chr1:231376953-231413719:+,glyceronephosphate_O-acyltransferase,FAM122B->chrX:133903596-133931262:-,family_with_sequence_similarity_122B	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	KIRREL3--DCPS	2	0	KIRREL3	2916	chr11:126870351:-	DCPS	30918	chr11:126201300:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	LOCAL_INVERSION:-:+:[77610],KIRREL3->chr11:126293254-126873355:-,kin_of_IRRE_like_3_(Drosophila),DCPS->chr11:126173647-126215644:+,decapping_enzyme,_scavenger	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	MATR3--CTNNA1	2	0	MATR3	9772	chr5:138629494:+	CTNNA1	45982	chr5:138145727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	DMS153_LUNG	1	1	0.022	TRUE	3	14	0	14	0	FALSE	ACH-000594
DMS153_LUNG	NF1--AC084809.3	1	4	NF1	4721	chr17:29486111:+	AC084809.3	78144	chr17:31233209:+	ONLY_REF_SPLICE	YES	75	1	0.06	0.83	0.011	0.044	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,AC084809.3->chr17:31232680-31233602:+	DMS153_LUNG	0.06	0.83	0.055	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	PDE3B--MGAT4A	2	0	PDE3B	21983	chr11:14865572:+	MGAT4A	33193	chr2:99343030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PDE3B->chr11:14665269-14892350:+,phosphodiesterase_3B,MGAT4A->chr2:99235569-99347589:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_A	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	PHF7--CHMP1A	2	0	PHF7	4385	chr3:52448603:+	CHMP1A	17229	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=7;pct=0.08%;dist=Esophagus_-_Mucosa=2,Ovary=1,Minor_Salivary_Gland=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Testis=1,Brain_-_Cortex=1},PHF7->PHD_finger_protein_7,chr3:52444673-52457657:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	DMS153_LUNG	1	1	0.022	TRUE	1	3	0	2	1	TRUE	ACH-000594
DMS153_LUNG	RAB11FIP3--TRNAU1AP	2	0	RAB11FIP3	10174	chr16:546859:+	TRNAU1AP	29571	chr1:28897688:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+,TRNAU1AP->chr1:28879597-28905051:+,tRNA_selenocysteine_1_associated_protein_1	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	SESTD1--DNAJC10	2	0	SESTD1	7261	chr2:180036847:-	DNAJC10	43766	chr2:183600976:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	SESTD1->SEC14_and_spectrin_domain_containing_1,chr2:179966419-180129517:-,DNAJC10->DnaJ_heat_shock_protein_family_(Hsp40)_member_C10,chr2:183580999-183659191:+	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	SHOC2--KDM6A	2	0	SHOC2	4726	chr10:112724819:+	KDM6A	42231	chrX:44949968:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	SHOC2->SHOC2_leucine-rich_repeat_scaffold_protein,chr10:112679301-112773425:+,KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	ZZZ3--NRD1	2	0	ZZZ3	1835	chr1:78148270:-	NRD1	27655	chr1:52306186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	ZZZ3->chr1:78028101-78149104:-,zinc_finger_ZZ-type_containing_3,NRD1->chr1:52254863-52344477:-	DMS153_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	RP11-108K3.1--GLDN	1	3	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	3	0.8	0.57	0.011	0.033	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	DMS153_LUNG	0.57	0.8	0.044	FALSE	0	30	1	55	0	FALSE	ACH-000594
DMS153_LUNG	RP11-120D5.1--MID1	1	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	3	43	0.57	0.09	0.011	0.033	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	DMS153_LUNG	0.09	0.57	0.044	FALSE	0	48	1	163	0	FALSE	ACH-000594
DMS153_LUNG	SPIDR--UBE2V2	1	3	SPIDR	30212	chr8:48626203:+	UBE2V2	45393	chr8:48962413:+	ONLY_REF_SPLICE	YES	184	158	0.02	0.02	0.011	0.033	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,UBE2V2->chr8:48920960-48977268:+,ubiquitin_conjugating_enzyme_E2_V2	DMS153_LUNG	0.02	0.02	0.044	TRUE	0	0	0	1	0	FALSE	ACH-000594
DMS153_LUNG	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	NO	0	6	1	0.33	0.011	0.022	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	DMS153_LUNG	0.33	1	0.033	FALSE	0	14	0	30	0	FALSE	ACH-000594
DMS153_LUNG	RP11-681L8.1--STPG2	1	2	RP11-681L8.1	3504	chr4:98313793:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0.022	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	DMS153_LUNG	1	1	0.033	TRUE	0	4	1	7	4	TRUE	ACH-000594
DMS153_LUNG	RP11-681L8.1--STPG2	1	2	RP11-681L8.1	3504	chr4:98313793:-	STPG2	23575	chr4:98184732:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.011	0.022	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	DMS153_LUNG	1	1	0.033	TRUE	0	4	0	2	4	TRUE	ACH-000594
DMS153_LUNG	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	47	1261	0.04	0	0.011	0.011	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	DMS153_LUNG	0	0.04	0.022	FALSE	16	22	0	27	0	FALSE	ACH-000594
DMS153_LUNG	CHD7--RAB2A	1	1	CHD7	1305	chr8:61591641:+	RAB2A	45475	chr8:61471411:+	ONLY_REF_SPLICE	NO	87	319	0.02	0.01	0.011	0.011	LOCAL_REARRANGEMENT:+:[55151],CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7,RAB2A->RAB2A,_member_RAS_oncogene_family,chr8:61429416-61536186:+	DMS153_LUNG	0.01	0.02	0.022	FALSE	0	4	0	2	3	FALSE	ACH-000594
DMS153_LUNG	EXT2--PPA2	1	1	EXT2	17809	chr11:44228509:+	PPA2	30120	chr4:106374799:-	ONLY_REF_SPLICE	YES	240	386	0.01	0.01	0.011	0.011	EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	DMS153_LUNG	0.01	0.01	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000594
DMS153_LUNG	FGF14-IT1--FGF14	1	1	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	22	1	0.08	0.011	0.011	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	DMS153_LUNG	0.08	1	0.022	TRUE	71	201	23	28	0	FALSE	ACH-000594
DMS153_LUNG	NBPF3--RP11-399E6.1	1	1	NBPF3	21921	chr1:21805893:+	RP11-399E6.1	31861	chr1:41726415:+	ONLY_REF_SPLICE	NO	19	0	0.1	1	0.011	0.011	NBPF3->chr1:21766621-21811498:+,neuroblastoma_breakpoint_family_member_3,RP11-399E6.1->chr1:41708045-41750533:+	DMS153_LUNG	0.1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000594
DMS153_LUNG	PANX1--DLAT	1	1	PANX1	2706	chr11:93886796:+	DLAT	14219	chr11:111904128:+	ONLY_REF_SPLICE	YES	179	161	0.01	0.01	0.011	0.011	PANX1->chr11:93862094-93915138:+,pannexin_1,DLAT->chr11:111895538-111935114:+,dihydrolipoamide_S-acetyltransferase	DMS153_LUNG	0.01	0.01	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000594
DMS153_LUNG	RHCE--SMPDL3B	1	1	RHCE	14858	chr1:25696958:-	SMPDL3B	23437	chr1:28271743:+	ONLY_REF_SPLICE	YES	14	66	0.12	0.03	0.011	0.011	RHCE->Rh_blood_group_CcEe_antigens,chr1:25688740-25756683:-,SMPDL3B->chr1:28261504-28285668:+,sphingomyelin_phosphodiesterase_acid_like_3B	DMS153_LUNG	0.03	0.12	0.022	TRUE	0	0	0	1	0	FALSE	ACH-000594
DMS153_LUNG	RNF138--TRAPPC8	1	1	RNF138	5368	chr18:29693823:+	TRAPPC8	28203	chr18:29480988:-	ONLY_REF_SPLICE	YES	337	138	0.01	0.01	0.011	0.011	RNF138->chr18:29671818-29711524:+,ring_finger_protein_138,TRAPPC8->chr18:29409136-29533099:-,trafficking_protein_particle_complex_8	DMS153_LUNG	0.01	0.01	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000594
DMS153_LUNG	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	1346	chr4:98554629:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0.011	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	DMS153_LUNG	1	1	0.022	TRUE	0	1	0	3	1	TRUE	ACH-000594
DMS153_LUNG	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	22333	chr4:98480268:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.011	0.011	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	DMS153_LUNG	1	1	0.022	TRUE	0	6	0	7	6	TRUE	ACH-000594
DMS153_LUNG	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.011	0.011	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DMS153_LUNG	0.67	1	0.022	FALSE	407	2205	196	549	0	FALSE	ACH-000594
DMS153_LUNG	SAMD12--EIF3H	1	1	SAMD12	4644	chr8:119391799:-	EIF3H	30065	chr8:117671219:-	ONLY_REF_SPLICE	YES	25	1404	0.07	0	0.011	0.011	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hypothalamus=1},SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	DMS153_LUNG	0	0.07	0.022	FALSE	0	1	0	1	0	FALSE	ACH-000594
DMS153_LUNG	SMC3--PDCD4	1	1	SMC3	14888	chr10:112352981:+	PDCD4	30091	chr10:112640991:+	ONLY_REF_SPLICE	YES	469	572	0	0	0.011	0.011	SMC3->chr10:112327449-112364394:+,structural_maintenance_of_chromosomes_3,PDCD4->Oncogene{Bushman},chr10:112631565-112659764:+,programmed_cell_death_4_(neoplastic_transformation_inhibitor)	DMS153_LUNG	0	0	0.022	FALSE	0	2	0	2	1	FALSE	ACH-000594
DMS153_LUNG	STAG2--SPTSSA	1	1	STAG2	32811	chrX:123217399:+	SPTSSA	47662	chr14:34904510:-	ONLY_REF_SPLICE	NO	655	570	0	0	0.011	0.011	STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,SPTSSA->chr14:34901995-34931562:-,serine_palmitoyltransferase_small_subunit_A	DMS153_LUNG	0	0	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000594
DMS153_LUNG	UBXN2B--TOX	1	1	UBXN2B	3383	chr8:59329512:+	TOX	19067	chr8:59872567:-	ONLY_REF_SPLICE	YES	138	471	0.01	0	0.011	0.011	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Muscularis=1},UBXN2B->UBX_domain_protein_2B,chr8:59323823-59364060:+,TOX->chr8:59717977-60031767:-,thymocyte_selection_associated_high_mobility_group_box	DMS153_LUNG	0	0.01	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000594
DMS153_LUNG	VWDE--PHF14	1	1	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	16	137	0.11	0.01	0.011	0.011	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	DMS153_LUNG	0.01	0.11	0.022	FALSE	0	6	0	17	2	FALSE	ACH-000594
DMS153_LUNG	XKR9--LACTB2	1	1	XKR9	1174	chr8:71581773:+	LACTB2	20001	chr8:71556478:-	ONLY_REF_SPLICE	NO	18	186	0.1	0.01	0.011	0.011	LOCAL_INVERSION:+:-:[191],XKR9->XK_related_9,chr8:71581600-71702606:+,LACTB2->chr8:71547553-71581409:-,lactamase_beta_2	DMS153_LUNG	0.01	0.1	0.022	FALSE	0	11	0	8	7	FALSE	ACH-000594
T84_LARGE_INTESTINE	PTPN23--ELP6	257	63	PTPN23	2245	chr3:47437707:+	ELP6	17645	chr3:47552716:-	ONLY_REF_SPLICE	YES	17	34	0.95	0.9	1.844	0.452	LOCAL_INVERSION:+:-:[82199],PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23,ELP6->chr3:47537130-47555251:-,elongator_acetyltransferase_complex_subunit_6	T84_LARGE_INTESTINE	0.9	0.95	2.296	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	TIMM23B--LINC00843	163	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1695	0.2368	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	T84_LARGE_INTESTINE	0.99	1	1.4063	TRUE	508	994	45	981	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TN	147	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0547	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	T84_LARGE_INTESTINE	1	1	1.0547	FALSE	369	2501	205	193	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TC	128	29	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9184	0.2081	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	T84_LARGE_INTESTINE	1	1	1.1265	FALSE	462	80	0	856	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	TIMM23--RP11-464F9.1	89	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	284	8	0.24	0.92	0.6386	0.0072	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	T84_LARGE_INTESTINE	0.24	0.92	0.6458	TRUE	519	3926	326	965	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	81	2	MTND4P12	1209	chr5:134263518:-	MTATP6P1	5316	chr1:569014:+	INCL_NON_REF_SPLICE	YES	4	0	0.95	1	0.5812	0.0144	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.95	1	0.5956	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	53	33	MTND4P12	1773	chr5:134262954:-	MTATP6P1	5319	chr1:569017:+	INCL_NON_REF_SPLICE	YES	6	0	0.93	1	0.3803	0.2368	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.93	1	0.6171	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	OR51S1--TP53I11	61	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4377	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	T84_LARGE_INTESTINE	1	1	0.4377	TRUE	402	216	10	229	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TN	32	89	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2296	0.6386	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	T84_LARGE_INTESTINE	1	1	0.8682	FALSE	369	2501	205	193	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-ND6--MT-TE	51	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.3659	0.0359	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T84_LARGE_INTESTINE	0.98	1	0.4018	FALSE	499	1288	110	792	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TN--MT-TC	33	43	MT-TN	1131	chrM:5599:-	MT-TC	4100	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2368	0.3085	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[32],MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	T84_LARGE_INTESTINE	1	1	0.5453	FALSE	79	55	2	2	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	ELP6--PTPN23	37	20	ELP6	1225	chr3:47555027:-	PTPN23	16500	chr3:47446142:+	ONLY_REF_SPLICE	YES	24	15	0.7	0.79	0.2655	0.1435	LOCAL_INVERSION:-:+:[82199],ELP6->chr3:47537130-47555251:-,elongator_acetyltransferase_complex_subunit_6,PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23	T84_LARGE_INTESTINE	0.7	0.79	0.409	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	40	2	MTND4P12	1216	chr5:134263511:-	MTATP6P1	5319	chr1:569017:+	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.287	0.0144	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.91	1	0.3014	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	33	12	MTND4P12	1756	chr5:134262971:-	MTATP6P1	5665	chr1:569363:+	INCL_NON_REF_SPLICE	YES	6	1464	0.88	0.03	0.2368	0.0861	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.03	0.88	0.3229	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-ND6--MT-TE	25	25	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	9	0	0.85	1	0.1794	0.1794	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T84_LARGE_INTESTINE	0.85	1	0.3588	FALSE	499	1288	110	792	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	30	2	MTND4P12	1213	chr5:134263514:-	MTATP6P1	5323	chr1:569021:+	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.2153	0.0144	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.89	1	0.2297	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TN	11	55	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0.3946	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	T84_LARGE_INTESTINE	1	1	0.4735	FALSE	369	2501	205	193	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-ND6--MT-TE	23	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.165	0.0431	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T84_LARGE_INTESTINE	0.97	1	0.2081	FALSE	499	1288	110	792	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TN	6	68	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0.4879	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	T84_LARGE_INTESTINE	1	1	0.531	FALSE	369	2501	205	193	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	11	39	MTND4P12	1828	chr5:134262899:-	MTATP6P1	5323	chr1:569021:+	INCL_NON_REF_SPLICE	YES	4	0	0.93	1	0.0789	0.2798	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.93	1	0.3587	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	C15orf57--CBX3	18	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	44	41	0.36	0.38	0.1292	0.0502	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	T84_LARGE_INTESTINE	0.36	0.38	0.1794	TRUE	267	562	48	632	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TN--MT-TC	3	66	MT-TN	1099	chrM:5631:-	MT-TC	4084	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0215	0.4736	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[32],MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	T84_LARGE_INTESTINE	1	1	0.4951	FALSE	79	55	2	2	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	5	58	MTND4P12	2250	chr5:134262477:-	MTATP6P1	5323	chr1:569021:+	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.0359	0.4162	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.95	1	0.4521	TRUE	27	22	4	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TN	14	21	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1005	0.1507	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	T84_LARGE_INTESTINE	1	1	0.2512	FALSE	369	2501	205	193	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TC	13	24	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0933	0.1722	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	T84_LARGE_INTESTINE	1	1	0.2655	FALSE	462	80	0	856	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TN	11	29	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0.2081	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	T84_LARGE_INTESTINE	1	1	0.287	FALSE	369	2501	205	193	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	3	60	MTND4P12	2320	chr5:134262407:-	MTATP6P1	5319	chr1:569017:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0215	0.4305	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	1	1	0.452	TRUE	27	22	4	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-ND6--MT-TE	4	53	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.3803	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T84_LARGE_INTESTINE	1	1	0.409	FALSE	499	1288	110	792	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	RP11-680G10.1--GSE1	17	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	44	1	0.29	0.122	0.0072	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	T84_LARGE_INTESTINE	0.29	1	0.1292	TRUE	465	1949	224	605	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	16	3	MTND4P12	1828	chr5:134262899:-	MTATP6P1	5822	chr1:569520:+	INCL_NON_REF_SPLICE	YES	4	2385	0.83	0.01	0.1148	0.0215	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.01	0.83	0.1363	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	PRPF6--HUNK	15	7	PRPF6	1182	chr20:62612669:+	HUNK	29525	chr21:33331155:+	ONLY_REF_SPLICE	YES	164	7	0.12	0.76	0.1076	0.0502	PRPF6->chr20:62612488-62664453:+,pre-mRNA_processing_factor_6,HUNK->chr21:33245628-33416946:+,hormonally_up-regulated_Neu-associated_kinase	T84_LARGE_INTESTINE	0.12	0.76	0.1578	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	16	2	MTND4P12	1209	chr5:134263518:-	MTATP6P1	5498	chr1:569196:+	INCL_NON_REF_SPLICE	NO	4	669	0.82	0.03	0.1148	0.0144	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.03	0.82	0.1292	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	16	1	MTND4P12	1209	chr5:134263518:-	MTATP6P1	5665	chr1:569363:+	INCL_NON_REF_SPLICE	NO	4	1464	0.81	0.01	0.1148	0.0072	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.01	0.81	0.122	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-ND6--MT-TE	3	51	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.0215	0.3659	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T84_LARGE_INTESTINE	0.96	1	0.3874	FALSE	499	1288	110	792	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MECOM--EZH2	15	2	MECOM	3693	chr3:169098975:-	EZH2	37700	chr7:148544397:-	ONLY_REF_SPLICE	YES	3	30	0.85	0.36	0.1076	0.0144	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	T84_LARGE_INTESTINE	0.36	0.85	0.122	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	MT-ND6--MT-TE	6	38	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	9	0	0.83	1	0.0431	0.2727	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T84_LARGE_INTESTINE	0.83	1	0.3158	FALSE	499	1288	110	792	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	15	2	MTND4P12	1209	chr5:134263518:-	MTATP6P1	5319	chr1:569017:+	INCL_NON_REF_SPLICE	YES	4	0	0.81	1	0.1076	0.0144	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.81	1	0.122	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	15	1	MTND4P12	1211	chr5:134263516:-	MTATP6P1	5634	chr1:569332:+	INCL_NON_REF_SPLICE	NO	4	2204	0.8	0.01	0.1076	0.0072	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.01	0.8	0.1148	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	PTPN23--ELP6	11	17	PTPN23	2245	chr3:47437707:+	ELP6	19916	chr3:47545938:-	ONLY_REF_SPLICE	YES	17	77	0.62	0.27	0.0789	0.122	LOCAL_INVERSION:+:-:[82199],PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23,ELP6->chr3:47537130-47555251:-,elongator_acetyltransferase_complex_subunit_6	T84_LARGE_INTESTINE	0.27	0.62	0.2009	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	MT-ND6--MT-TE	8	25	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	8	0	0.8	1	0.0574	0.1794	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T84_LARGE_INTESTINE	0.8	1	0.2368	FALSE	499	1288	110	792	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	7	25	MTND4P12	1467	chr5:134263260:-	MTATP6P1	5323	chr1:569021:+	INCL_NON_REF_SPLICE	YES	12	0	0.73	1	0.0502	0.1794	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.73	1	0.2296	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0933	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	T84_LARGE_INTESTINE	1	1	0.0933	TRUE	0	0	0	434	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-ND6--MT-TE	6	26	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0431	0.1866	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T84_LARGE_INTESTINE	0.97	1	0.2297	FALSE	499	1288	110	792	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	12	1	MTND4P12	1248	chr5:134263479:-	MTATP6P1	5786	chr1:569484:+	INCL_NON_REF_SPLICE	YES	2	4213	0.87	0	0.0861	0.0072	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0	0.87	0.0933	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TN	12	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0861	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	T84_LARGE_INTESTINE	1	1	0.0861	FALSE	369	2501	205	193	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	IFI27--MT-ND4L	9	10	IFI27	8929	chr14:94582869:+	MT-ND4L	12095	chrM:10471:+	INCL_NON_REF_SPLICE	YES	871	0	0.02	1	0.0646	0.0718	IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T84_LARGE_INTESTINE	0.02	1	0.1364	FALSE	0	0	0	13	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TC	3	34	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0215	0.244	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	T84_LARGE_INTESTINE	1	1	0.2655	FALSE	462	80	0	856	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	4	29	MTND4P12	1563	chr5:134263164:-	MTATP6P1	5323	chr1:569021:+	INCL_NON_REF_SPLICE	NO	11	0	0.75	1	0.0287	0.2081	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.75	1	0.2368	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	7	14	MTND4P12	1299	chr5:134263428:-	MTATP6P1	5323	chr1:569021:+	INCL_NON_REF_SPLICE	NO	19	0	0.53	1	0.0502	0.1005	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.53	1	0.1507	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	3	30	MTND4P12	1826	chr5:134262901:-	MTATP6P1	5424	chr1:569122:+	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.0215	0.2153	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.89	1	0.2368	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	10	1	MTND4P12	1216	chr5:134263511:-	MTATP6P1	5637	chr1:569335:+	INCL_NON_REF_SPLICE	YES	4	2196	0.73	0	0.0718	0.0072	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0	0.73	0.079	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TN--MT-TC	10	0	MT-TN	1003	chrM:5727:-	MT-TC	4094	chrM:5806:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0718	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[32],MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	T84_LARGE_INTESTINE	1	1	0.0718	FALSE	79	55	2	2	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	9	2	MTND4P12	1216	chr5:134263511:-	MTATP6P1	5323	chr1:569021:+	INCL_NON_REF_SPLICE	YES	4	0	0.73	1	0.0646	0.0144	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.73	1	0.079	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	4	22	MTND4P12	2122	chr5:134262605:-	MTATP6P1	5627	chr1:569325:+	INCL_NON_REF_SPLICE	NO	4	2269	0.87	0.01	0.0287	0.1579	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.01	0.87	0.1866	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TC	3	25	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0215	0.1794	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	T84_LARGE_INTESTINE	1	1	0.2009	FALSE	462	80	0	856	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	C15orf57--CBX3	7	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	41	42	0.24	0.24	0.0502	0.0431	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	T84_LARGE_INTESTINE	0.24	0.24	0.0933	TRUE	267	562	48	632	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	7	6	MTND4P12	1452	chr5:134263275:-	MTATP6P1	5778	chr1:569476:+	INCL_NON_REF_SPLICE	YES	13	4119	0.5	0	0.0502	0.0431	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0	0.5	0.0933	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-ND6--MT-TE	8	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T84_LARGE_INTESTINE	1	1	0.0574	FALSE	499	1288	110	792	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	7	4	MTND4P12	1299	chr5:134263428:-	MTATP6P1	5627	chr1:569325:+	INCL_NON_REF_SPLICE	YES	19	2269	0.37	0	0.0502	0.0287	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0	0.37	0.0789	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	3	19	MTND4P12	2122	chr5:134262605:-	MTATP6P1	5681	chr1:569379:+	INCL_NON_REF_SPLICE	NO	4	1134	0.85	0.02	0.0215	0.1363	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.02	0.85	0.1578	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	ELP6--PTPN23	2	21	ELP6	1571	chr3:47554681:-	PTPN23	16500	chr3:47446142:+	ONLY_REF_SPLICE	YES	30	15	0.43	0.61	0.0144	0.1507	LOCAL_INVERSION:-:+:[82199],ELP6->chr3:47537130-47555251:-,elongator_acetyltransferase_complex_subunit_6,PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23	T84_LARGE_INTESTINE	0.43	0.61	0.1651	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TN	7	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0502	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	T84_LARGE_INTESTINE	1	1	0.0502	FALSE	369	2501	205	193	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TC	3	15	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0215	0.1076	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	T84_LARGE_INTESTINE	1	1	0.1291	FALSE	462	80	0	856	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	3	14	MTND4P12	1756	chr5:134262971:-	MTATP6P1	5662	chr1:569360:+	INCL_NON_REF_SPLICE	YES	6	1643	0.74	0.01	0.0215	0.1005	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.01	0.74	0.122	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	RP11-680G10.1--GSE1	6	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.47	0.0431	0.0144	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	T84_LARGE_INTESTINE	0.47	1	0.0575	TRUE	458	1351	185	561	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	CCDC12--KHDRBS3	6	1	CCDC12	6415	chr3:46982488:-	KHDRBS3	17063	chr8:136533480:+	ONLY_REF_SPLICE	YES	137	5	0.05	0.58	0.0431	0.0072	CCDC12->chr3:46963216-47023500:-,coiled-coil_domain_containing_12,KHDRBS3->KH_domain_containing,_RNA_binding,_signal_transduction_associated_3,chr8:136469700-136668965:+	T84_LARGE_INTESTINE	0.05	0.58	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	MT-ND6--MT-TE	6	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0431	0.0072	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T84_LARGE_INTESTINE	0.88	1	0.0503	FALSE	499	1288	110	792	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0.0072	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	T84_LARGE_INTESTINE	1	1	0.0503	FALSE	462	80	0	856	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	6	1	MTND4P12	1216	chr5:134263511:-	MTATP6P1	5778	chr1:569476:+	INCL_NON_REF_SPLICE	YES	4	4119	0.64	0	0.0431	0.0072	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0	0.64	0.0503	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TN	6	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	T84_LARGE_INTESTINE	1	1	0.0431	FALSE	369	2501	205	193	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	3	12	MTND4P12	2231	chr5:134262496:-	MTATP6P1	5762	chr1:569460:+	INCL_NON_REF_SPLICE	YES	2	3733	0.88	0	0.0215	0.0861	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0	0.88	0.1076	TRUE	27	22	4	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	ATP13A1--ZNF14	5	3	ATP13A1	13480	chr19:19760376:-	ZNF14	21185	chr19:19825296:-	ONLY_REF_SPLICE	YES	143	6	0.05	0.57	0.0359	0.0215	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:-:[46778],ATP13A1->ATPase_13A1,chr19:19756007-19774502:-,ZNF14->chr19:19821280-19843906:-,zinc_finger_protein_14	T84_LARGE_INTESTINE	0.05	0.57	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TC	3	10	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0215	0.0718	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	T84_LARGE_INTESTINE	1	1	0.0933	FALSE	462	80	0	856	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	3	10	MTND4P12	1299	chr5:134263428:-	MTATP6P1	5536	chr1:569234:+	INCL_NON_REF_SPLICE	YES	19	2276	0.41	0.01	0.0215	0.0718	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.01	0.41	0.0933	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	5	2	MTND4P12	1205	chr5:134263522:-	MTATP6P1	5319	chr1:569017:+	INCL_NON_REF_SPLICE	NO	4	0	0.64	1	0.0359	0.0144	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.64	1	0.0503	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	5	1	MTND4P12	1254	chr5:134263473:-	MTATP6P1	5831	chr1:569529:+	INCL_NON_REF_SPLICE	YES	4	2130	0.6	0	0.0359	0.0072	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0	0.6	0.0431	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	4	5	MTND4P12	1787	chr5:134262940:-	MTATP6P1	5796	chr1:569494:+	INCL_NON_REF_SPLICE	YES	3	4109	0.75	0	0.0287	0.0359	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0	0.75	0.0646	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T84_LARGE_INTESTINE	1	1	0.0359	FALSE	499	1288	110	792	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	3	8	MTND4P12	1774	chr5:134262953:-	MTATP6P1	5781	chr1:569479:+	INCL_NON_REF_SPLICE	YES	6	4159	0.65	0	0.0215	0.0574	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0	0.65	0.0789	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	T84_LARGE_INTESTINE	1	1	0.0359	FALSE	292	1546	117	613	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	4	2	MTND4P12	1220	chr5:134263507:-	MTATP6P1	5409	chr1:569107:+	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0287	0.0144	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.6	1	0.0431	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	4	2	MTND4P12	1209	chr5:134263518:-	MTATP6P1	5430	chr1:569128:+	INCL_NON_REF_SPLICE	NO	4	0	0.6	1	0.0287	0.0144	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.6	1	0.0431	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	4	2	MTND4P12	1248	chr5:134263479:-	MTATP6P1	5536	chr1:569234:+	INCL_NON_REF_SPLICE	YES	2	2276	0.75	0	0.0287	0.0144	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0	0.75	0.0431	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	ELP6--PTPN23	2	9	ELP6	1225	chr3:47555027:-	PTPN23	16853	chr3:47446495:+	ONLY_REF_SPLICE	YES	24	23	0.31	0.32	0.0144	0.0646	LOCAL_INVERSION:-:+:[82199],ELP6->chr3:47537130-47555251:-,elongator_acetyltransferase_complex_subunit_6,PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23	T84_LARGE_INTESTINE	0.31	0.32	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	3	5	MTND4P12	1281	chr5:134263446:-	MTATP6P1	5319	chr1:569017:+	INCL_NON_REF_SPLICE	YES	9	0	0.47	1	0.0215	0.0359	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.47	1	0.0574	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	4	1	MTND4P12	1223	chr5:134263504:-	MTATP6P1	5795	chr1:569493:+	INCL_NON_REF_SPLICE	YES	4	4182	0.56	0	0.0287	0.0072	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0	0.56	0.0359	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	4	1	MTND4P12	1239	chr5:134263488:-	MTATP6P1	5665	chr1:569363:+	INCL_NON_REF_SPLICE	YES	2	1464	0.71	0	0.0287	0.0072	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0	0.71	0.0359	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	CPSF6--CREBZF	4	0	CPSF6	11046	chr12:69656342:+	CREBZF	22587	chr11:85374645:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx_v2:{count=3;pct=0.03%;dist=Breast_-_Mammary_Tissue=1,Cells_-_EBV-transformed_lymphocytes=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CREBZF->CREB/ATF_bZIP_transcription_factor,chr11:85370752-85393951:-	T84_LARGE_INTESTINE	1	1	0.0287	TRUE	0	2	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	MECOM--EZH2	4	0	MECOM	3693	chr3:169098975:-	EZH2	38407	chr7:148543690:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	T84_LARGE_INTESTINE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T84_LARGE_INTESTINE	1	1	0.0287	FALSE	499	1288	110	792	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TN	4	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	T84_LARGE_INTESTINE	1	1	0.0287	FALSE	369	2501	205	193	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	T84_LARGE_INTESTINE	1	1	0.0287	TRUE	0	0	0	434	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	3	2	MTND4P12	1213	chr5:134263514:-	MTATP6P1	5327	chr1:569025:+	INCL_NON_REF_SPLICE	NO	4	0	0.56	1	0.0215	0.0144	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0.56	1	0.0359	TRUE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	3	1	MTND4P12	1215	chr5:134263512:-	MTATP6P1	5749	chr1:569447:+	INCL_NON_REF_SPLICE	YES	4	3275	0.5	0	0.0215	0.0072	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0	0.5	0.0287	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	3	1	MTND4P12	1239	chr5:134263488:-	MTATP6P1	5657	chr1:569355:+	INCL_NON_REF_SPLICE	YES	2	1681	0.67	0	0.0215	0.0072	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0	0.67	0.0287	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	3	1	MTND4P12	1239	chr5:134263488:-	MTATP6P1	5777	chr1:569475:+	INCL_NON_REF_SPLICE	YES	2	4137	0.67	0	0.0215	0.0072	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0	0.67	0.0287	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MTND4P12--MTATP6P1	3	1	MTND4P12	1222	chr5:134263505:-	MTATP6P1	5656	chr1:569354:+	INCL_NON_REF_SPLICE	YES	4	1691	0.5	0	0.0215	0.0072	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	T84_LARGE_INTESTINE	0	0.5	0.0287	FALSE	27	31	5	8	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	CMTM8--CMTM7	3	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	T84_LARGE_INTESTINE	1	1	0.0215	FALSE	118	557	29	88	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	MT-TA--MT-TN	3	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0215	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	T84_LARGE_INTESTINE	1	1	0.0215	FALSE	369	2501	205	193	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0215	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	T84_LARGE_INTESTINE	1	1	0.0215	TRUE	0	0	0	434	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0.0287	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	T84_LARGE_INTESTINE	1	1	0.0431	FALSE	515	4851	409	746	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	PARN--FAM208A	2	1	PARN	27201	chr16:14645878:-	FAM208A	37357	chr3:56707753:-	ONLY_REF_SPLICE	YES	71	36	0.04	0.08	0.0144	0.0072	PARN->chr16:14529558-14726585:-,poly(A)-specific_ribonuclease,FAM208A->chr3:56654161-56717265:-,family_with_sequence_similarity_208_member_A	T84_LARGE_INTESTINE	0.04	0.08	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	WARS2--RP11-80B9.4	2	1	WARS2	4484	chr1:119618973:-	RP11-80B9.4	14671	chr1:240903153:-	ONLY_REF_SPLICE	YES	26	0	0.1	1	0.0144	0.0072	WARS2->chr1:119573839-119683294:-,tryptophanyl_tRNA_synthetase_2,_mitochondrial,RP11-80B9.4->chr1:240902719-240906911:-	T84_LARGE_INTESTINE	0.1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	ABL2--TIPRL	2	0	ABL2	1444	chr1:179198376:-	TIPRL	30472	chr1:168153140:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,TIPRL->TOR_signaling_pathway_regulator,chr1:168148171-168169950:+	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	ACTR8--SLC19A1	2	0	ACTR8	2708	chr3:53913966:-	SLC19A1	24617	chr21:46952062:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	ACTR8->ARP8_actin-related_protein_8_homolog,chr3:53901093-53916229:-,SLC19A1->Oncogene{Bushman},chr21:46913486-46964325:-,solute_carrier_family_19_member_1	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	ADAP1--SUN1	2	0	ADAP1	2012	chr7:994032:-	SUN1	48590	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	GSE1--ZMYM4	2	0	GSE1	4784	chr16:85682357:+	ZMYM4	34621	chr1:35846860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	IFI27--FAM136A	2	0	IFI27	4179	chr14:94578119:+	FAM136A	13204	chr2:70528112:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27,FAM136A->chr2:70523107-70529222:-,family_with_sequence_similarity_136_member_A	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	MAD1L1--ADRBK1	2	0	MAD1L1	19401	chr7:2188787:-	ADRBK1	46242	chr11:67044743:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,ADRBK1->adrenergic,_beta,_receptor_kinase_1,chr11:67033881-67054027:+	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	POLR3K--PTCD3	2	0	POLR3K	1153	chr16:103476:-	PTCD3	28182	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	PPP6R3--CHKA	2	0	PPP6R3	14231	chr11:68326147:+	CHKA	41030	chr11:67864597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	RAB17--CDV3	2	0	RAB17	2735	chr2:238499110:-	CDV3	15049	chr3:133293883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	RAB17->RAB17,_member_RAS_oncogene_family,chr2:238482965-238510257:-,CDV3->CDV3_homolog,chr3:133292574-133309105:+	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0072	0.0287	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	T84_LARGE_INTESTINE	1	1	0.0359	FALSE	407	2205	196	549	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	53	396	64	110	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	SLC12A9--PQLC2	2	0	SLC12A9	4264	chr7:100452376:+	PQLC2	24806	chr1:19655066:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	SLC12A9->chr7:100424442-100464631:+,solute_carrier_family_12_member_9,PQLC2->PQ_loop_repeat_containing_2,chr1:19638820-19655794:+	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	SLC38A10--BAIAP2	2	0	SLC38A10	12104	chr17:79249769:-	BAIAP2	52580	chr17:79089570:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},SLC38A10->chr17:79218800-79269347:-,solute_carrier_family_38_member_10,BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	1	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	STXBP5--EPB41L2	2	0	STXBP5	1258	chr6:147525818:+	EPB41L2	44791	chr6:131277639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,EPB41L2->chr6:131160487-131384462:-,erythrocyte_membrane_protein_band_4.1_like_2	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	TMEM123--ERC1	2	0	TMEM123	2732	chr11:102323255:-	ERC1	22640	chr12:1213916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	ZNF519--HMGB1	2	0	ZNF519	11625	chr18:14084876:-	HMGB1	27243	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	T84_LARGE_INTESTINE	1	1	0.0144	TRUE	0	0	0	1	0	TRUE	ACH-000381
T84_LARGE_INTESTINE	ADAP1--SUN1	1	2	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	177	379	0.02	0.01	0.0072	0.0144	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	T84_LARGE_INTESTINE	0.01	0.02	0.0216	FALSE	16	22	0	27	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	CLIP2--MLXIPL	1	2	CLIP2	1260	chr7:73704064:+	MLXIPL	28805	chr7:73030507:-	ONLY_REF_SPLICE	NO	54	26	0.05	0.1	0.0072	0.0144	CLIP2->CAP-Gly_domain_containing_linker_protein_2,chr7:73703805-73820273:+,MLXIPL->MLX_interacting_protein_like,chr7:73007524-73038873:-	T84_LARGE_INTESTINE	0.05	0.1	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0072	0.0144	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	T84_LARGE_INTESTINE	1	1	0.0216	FALSE	416	2512	207	587	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	NQO1--HSPA8	1	1	NQO1	2684	chr16:69752273:-	HSPA8	15839	chr11:122930470:-	ONLY_REF_SPLICE	YES	1369	2267	0	0	0.0072	0.0072	NQO1->NAD(P)H_quinone_dehydrogenase_1,Oncogene{Bushman},chr16:69740899-69760854:-,HSPA8->chr11:122928197-122933938:-,heat_shock_protein_family_A_(Hsp70)_member_8	T84_LARGE_INTESTINE	0	0	0.0144	FALSE	0	0	0	1	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0072	0.0072	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	T84_LARGE_INTESTINE	0.67	1	0.0144	FALSE	81	155	12	160	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	SAMD4A--TMEM260	1	1	SAMD4A	2016	chr14:55034830:+	TMEM260	40191	chr14:57051719:+	ONLY_REF_SPLICE	YES	42	35	0.05	0.05	0.0072	0.0072	SAMD4A->chr14:55033815-55260033:+,sterile_alpha_motif_domain_containing_4A,TMEM260->chr14:56955072-57117324:+,transmembrane_protein_260	T84_LARGE_INTESTINE	0.05	0.05	0.0144	TRUE	0	0	0	1	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0072	0.0072	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	T84_LARGE_INTESTINE	0.67	1	0.0144	TRUE	62	24	1	171	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	USP47--GALNT18	1	1	USP47	1802	chr11:11863771:+	GALNT18	42339	chr11:11470483:-	ONLY_REF_SPLICE	YES	55	109	0.04	0.02	0.0072	0.0072	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=2},USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,GALNT18->chr11:11292423-11643552:-,polypeptide_N-acetylgalactosaminyltransferase_18	T84_LARGE_INTESTINE	0.02	0.04	0.0144	TRUE	0	1	0	1	0	FALSE	ACH-000381
T84_LARGE_INTESTINE	WRNIP1--RPRD1A	1	1	WRNIP1	2031	chr6:2766678:+	RPRD1A	25131	chr18:33573263:-	ONLY_REF_SPLICE	YES	70	59	0.03	0.03	0.0072	0.0072	WRNIP1->Werner_helicase_interacting_protein_1,chr6:2765648-2787186:+,RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A	T84_LARGE_INTESTINE	0.03	0.03	0.0144	TRUE	0	0	0	1	0	FALSE	ACH-000381
TEN_ENDOMETRIUM	STARD3--IKZF3	162	21	STARD3	1167	chr17:37793484:+	IKZF3	16107	chr17:37988404:-	ONLY_REF_SPLICE	YES	116	0	0.61	1	1.8551	0.2405	STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	TEN_ENDOMETRIUM	0.61	1	2.0956	TRUE	0	1	0	1	1	TRUE	ACH-000397
TEN_ENDOMETRIUM	PARP12--DENND2A	89	27	PARP12	2200	chr7:139762322:-	DENND2A	45880	chr7:140218538:-	ONLY_REF_SPLICE	YES	22	2	0.84	0.98	1.0192	0.3092	PARP12->chr7:139723544-139763521:-,poly(ADP-ribose)_polymerase_family_member_12,DENND2A->DENN_domain_containing_2A,chr7:140218220-140373793:-	TEN_ENDOMETRIUM	0.84	0.98	1.3284	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	DGCR8--AATF	75	32	DGCR8	3451	chr22:20074206:+	AATF	34490	chr17:35413901:+	ONLY_REF_SPLICE	YES	75	92	0.59	0.54	0.8589	0.3664	DGCR8->DGCR8_microprocessor_complex_subunit,chr22:20067755-20099400:+,AATF->Oncogene{Bushman},apoptosis_antagonizing_transcription_factor,chr17:35306175-35414171:+	TEN_ENDOMETRIUM	0.54	0.59	1.2253	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	NARS--TMX3	66	35	NARS	2589	chr18:55287801:-	TMX3	26404	chr18:66358598:-	ONLY_REF_SPLICE	YES	750	57	0.12	0.64	0.7558	0.4008	NARS->asparaginyl-tRNA_synthetase,chr18:55267888-55289445:-,TMX3->chr18:66340925-66382535:-,thioredoxin_related_transmembrane_protein_3	TEN_ENDOMETRIUM	0.12	0.64	1.1566	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	TIMM23B--LINC00843	66	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7558	0.2519	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TEN_ENDOMETRIUM	1	1	1.0077	TRUE	508	994	45	981	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	ZNF654--HMGB2	65	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7443	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TEN_ENDOMETRIUM	1	1	0.7443	TRUE	0	0	0	518	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	ATG7--SLC6A11	54	42	ATG7	18658	chr3:11383753:+	SLC6A11	47322	chr3:10953775:+	ONLY_REF_SPLICE	YES	53	0	0.64	1	0.6184	0.481	ATG7->autophagy_related_7,chr3:11313995-11599139:+,SLC6A11->chr3:10857885-10982419:+,solute_carrier_family_6_member_11	TEN_ENDOMETRIUM	0.64	1	1.0994	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	WNK1--CCDC77	46	36	WNK1	2732	chr12:863490:+	CCDC77	48057	chr12:514677:+	ONLY_REF_SPLICE	YES	246	17	0.25	0.83	0.5268	0.4123	WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77	TEN_ENDOMETRIUM	0.25	0.83	0.9391	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	VMP1--ZNF521	45	26	VMP1	10238	chr17:57851246:+	ZNF521	42480	chr18:22642705:-	ONLY_REF_SPLICE	YES	473	0	0.13	1	0.5153	0.2977	VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,ZNF521->Oncogene{Bushman},chr18:22641890-22932154:-,zinc_finger_protein_521	TEN_ENDOMETRIUM	0.13	1	0.813	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	WNK1--CCDC77	39	27	WNK1	2732	chr12:863490:+	CCDC77	50525	chr12:520913:+	ONLY_REF_SPLICE	YES	246	63	0.21	0.51	0.4466	0.3092	WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77	TEN_ENDOMETRIUM	0.21	0.51	0.7558	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	TIMM23--RP11-464F9.1	39	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	345	5	0.1	0.89	0.4466	0.0115	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TEN_ENDOMETRIUM	0.1	0.89	0.4581	TRUE	519	3926	326	965	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	SHISA9--U91319.1	32	19	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	26	0	0.66	1	0.3664	0.2176	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	TEN_ENDOMETRIUM	0.66	1	0.584	FALSE	4	37	0	19	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	CTNNA1--UBR3	30	26	CTNNA1	29393	chr5:138253587:+	UBR3	42644	chr2:170728746:+	ONLY_REF_SPLICE	YES	1057	49	0.05	0.53	0.3435	0.2977	CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,UBR3->chr2:170683968-170940641:+,ubiquitin_protein_ligase_E3_component_n-recognin_3_(putative)	TEN_ENDOMETRIUM	0.05	0.53	0.6412	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	EFCAB13--LRRC37A17P	31	22	EFCAB13	4732	chr17:45405749:+	LRRC37A17P	45400	chr17:45124512:+	ONLY_REF_SPLICE	YES	40	2	0.57	0.96	0.355	0.2519	EFCAB13->EF-hand_calcium_binding_domain_13,chr17:45400656-45518678:+,LRRC37A17P->chr17:45055847-45131935:+,leucine-rich_repeat_containing_37_member_A17,_pseudogene	TEN_ENDOMETRIUM	0.57	0.96	0.6069	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	PBX3--CASR	26	24	PBX3	2279	chr9:128510902:+	CASR	22762	chr3:121972795:+	ONLY_REF_SPLICE	YES	27	0	0.65	1	0.2977	0.2748	PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,CASR->calcium_sensing_receptor,chr3:121902530-122005342:+	TEN_ENDOMETRIUM	0.65	1	0.5725	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	PTPRJ--MKNK2	26	12	PTPRJ	10879	chr11:48149595:+	MKNK2	36536	chr19:2043581:-	ONLY_REF_SPLICE	YES	114	469	0.25	0.07	0.2977	0.1374	PTPRJ->Oncogene{Bushman},chr11:48002113-48189670:+,protein_tyrosine_phosphatase,_receptor_type_J,MKNK2->MAP_kinase_interacting_serine/threonine_kinase_2,chr19:2037470-2051243:-	TEN_ENDOMETRIUM	0.07	0.25	0.4351	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	FBXW4--C10orf76	25	13	FBXW4	9298	chr10:103384502:-	C10orf76	38990	chr10:103649247:-	ONLY_REF_SPLICE	YES	35	61	0.52	0.38	0.2863	0.1489	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Brain_-_Hippocampus=1},FBXW4->F-box_and_WD_repeat_domain_containing_4,Oncogene{Bushman},chr10:103370423-103455052:-,C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76	TEN_ENDOMETRIUM	0.38	0.52	0.4352	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	BTAF1--MARCH5	25	10	BTAF1	31550	chr10:93776222:+	MARCH5	43654	chr10:94070892:+	ONLY_REF_SPLICE	YES	39	97	0.47	0.27	0.2863	0.1145	BTAF1->B-TFIID_TATA-box_binding_protein_associated_factor_1,chr10:93683526-93790082:+,MARCH5->chr10:94050920-94113721:+,membrane_associated_ring-CH-type_finger_5	TEN_ENDOMETRIUM	0.27	0.47	0.4008	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	MT-TA--MT-TC	26	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2977	0.0344	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TEN_ENDOMETRIUM	1	1	0.3321	FALSE	462	80	0	856	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	KMT2A--CD3G	21	16	KMT2A	11400	chr11:118345030:+	CD3G	53622	chr11:118219742:+	ONLY_REF_SPLICE	YES	52	0	0.42	1	0.2405	0.1832	LOCAL_REARRANGEMENT:+:[81329],KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,CD3G->CD3g_molecule,chr11:118215059-118225876:+	TEN_ENDOMETRIUM	0.42	1	0.4237	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	NOTCH2--SEC22B	17	13	NOTCH2	12808	chr1:120529583:-	SEC22B	55150	chr1:145109524:+	ONLY_REF_SPLICE	YES	56	486	0.35	0.06	0.1947	0.1489	NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	TEN_ENDOMETRIUM	0.06	0.35	0.3436	TRUE	0	0	0	2	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	GLE1--CERCAM	13	25	GLE1	1205	chr9:131267183:+	CERCAM	20860	chr9:131181439:+	ONLY_REF_SPLICE	YES	34	0	0.53	1	0.1489	0.2863	LOCAL_REARRANGEMENT:+:[67353],GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+,CERCAM->cerebral_endothelial_cell_adhesion_molecule,chr9:131174030-131199626:+	TEN_ENDOMETRIUM	0.53	1	0.4352	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	C15orf57--CBX3	13	24	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	160	61	0.19	0.38	0.1489	0.2748	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TEN_ENDOMETRIUM	0.19	0.38	0.4237	TRUE	267	562	48	632	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	SGSM3--RP5-1042K10.10	18	0	SGSM3	1098	chr22:40766692:+	RP5-1042K10.10	17141	chr22:40772519:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2061	0	NEIGHBORS_OVERLAP:+:-:[15626],SGSM3->chr22:40766595-40806293:+,small_G_protein_signaling_modulator_3,RP5-1042K10.10->chr22:40768668-40784294:-	TEN_ENDOMETRIUM	1	1	0.2061	FALSE	0	0	0	1	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	HSP90AB1--MT-RNR2	16	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4582	0	0	1	0.1832	0.0229	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TEN_ENDOMETRIUM	0	1	0.2061	FALSE	13	9	0	364	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	ANKHD1--AE000661.37	14	9	ANKHD1	7029	chr5:139825560:+	AE000661.37	46424	chr14:22934278:-	ONLY_REF_SPLICE	YES	121	0	0.16	1	0.1603	0.1031	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,AE000661.37->chr14:22849083-22951948:-	TEN_ENDOMETRIUM	0.16	1	0.2634	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	KDELR1--BCAT2	13	11	KDELR1	3001	chr19:48892810:-	BCAT2	16767	chr19:49300590:-	ONLY_REF_SPLICE	YES	571	82	0.04	0.23	0.1489	0.126	KDELR1->KDEL_endoplasmic_reticulum_protein_retention_receptor_1,chr19:48885827-48894810:-,BCAT2->branched_chain_amino_acid_transaminase_2,chr19:49298319-49314286:-	TEN_ENDOMETRIUM	0.04	0.23	0.2749	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	CCNF--ABCA17P	14	5	CCNF	4434	chr16:2485874:+	ABCA17P	39950	chr16:2456829:+	INCL_NON_REF_SPLICE	YES	102	3	0.16	0.86	0.1603	0.0573	LOCAL_REARRANGEMENT:+:[2695],CCNF->Oncogene{Bushman},chr16:2479395-2508855:+,cyclin_F,ABCA17P->ATP_binding_cassette_subfamily_A_member_17,_pseudogene,chr16:2389151-2476700:+	TEN_ENDOMETRIUM	0.16	0.86	0.2176	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	NIPA2--POLA1	15	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1718	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	TEN_ENDOMETRIUM	1	1	0.1718	TRUE	46	1352	75	139	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	13	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.9	1	0.1489	0.0687	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TEN_ENDOMETRIUM	0.9	1	0.2176	FALSE	515	4851	409	746	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	WNK1--CCDC77	7	30	WNK1	2732	chr12:863490:+	CCDC77	49111	chr12:518534:+	ONLY_REF_SPLICE	YES	246	32	0.13	0.54	0.0802	0.3435	WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77	TEN_ENDOMETRIUM	0.13	0.54	0.4237	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	ANKHD1--AE000661.37	12	9	ANKHD1	7029	chr5:139825560:+	AE000661.37	45306	chr14:22950347:-	ONLY_REF_SPLICE	YES	121	0	0.15	1	0.1374	0.1031	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,AE000661.37->chr14:22849083-22951948:-	TEN_ENDOMETRIUM	0.15	1	0.2405	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	RP11-6N13.1--CTD-2374C24.1	12	7	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1374	0.0802	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	TEN_ENDOMETRIUM	0.95	1	0.2176	TRUE	5	4	0	46	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	TPST1--CCT6P1	11	10	TPST1	4708	chr7:65706257:+	CCT6P1	24732	chr7:65227934:+	ONLY_REF_SPLICE	YES	93	15	0.18	0.58	0.126	0.1145	TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,CCT6P1->chaperonin_containing_TCP1_subunit_6_pseudogene_1,chr7:65216129-65228341:+	TEN_ENDOMETRIUM	0.18	0.58	0.2405	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	RP11-120D5.1--MID1	12	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	64	0.71	0.19	0.1374	0.0344	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	TEN_ENDOMETRIUM	0.19	0.71	0.1718	FALSE	16	356	14	466	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	CCNF--ABCA17P	8	18	CCNF	4434	chr16:2485874:+	ABCA17P	38563	chr16:2454068:+	ONLY_REF_SPLICE	YES	102	0	0.2	1	0.0916	0.2061	LOCAL_REARRANGEMENT:+:[2695],CCNF->Oncogene{Bushman},chr16:2479395-2508855:+,cyclin_F,ABCA17P->ATP_binding_cassette_subfamily_A_member_17,_pseudogene,chr16:2389151-2476700:+	TEN_ENDOMETRIUM	0.2	1	0.2977	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	NRIP1--AF127936.7	12	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1374	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TEN_ENDOMETRIUM	1	1	0.1374	FALSE	292	1546	117	613	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	PBX3--CASR	10	7	PBX3	2279	chr9:128510902:+	CASR	25747	chr3:121980375:+	ONLY_REF_SPLICE	YES	27	14	0.39	0.55	0.1145	0.0802	PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,CASR->calcium_sensing_receptor,chr3:121902530-122005342:+	TEN_ENDOMETRIUM	0.39	0.55	0.1947	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	NRIP1--AF127936.7	10	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	39	0	0.26	1	0.1145	0.0458	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TEN_ENDOMETRIUM	0.26	1	0.1603	FALSE	164	806	69	479	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	7	14	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.84	0.0802	0.1603	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0.84	1	0.2405	FALSE	209	205	15	279	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	C15orf57--CBX3	6	17	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	159	63	0.13	0.27	0.0687	0.1947	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TEN_ENDOMETRIUM	0.13	0.27	0.2634	TRUE	267	562	48	632	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	10	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15778	4	0	0.73	0.1145	0.0115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	0.73	0.126	FALSE	231	205	14	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	10	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	12955	3	0	0.79	0.1145	0.0115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	0.79	0.126	FALSE	230	193	14	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	SPP1--MT-ATP6	10	0	SPP1	6793	chr4:88903711:+	MT-ATP6	10956	chrM:8838:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1145	0	SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TEN_ENDOMETRIUM	1	1	0.1145	FALSE	0	0	0	2	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	9	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13088	4	0	0.71	0.1031	0.0115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	0.71	0.1146	FALSE	230	198	14	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	NOTCH2--SEC22B	7	8	NOTCH2	12808	chr1:120529583:-	SEC22B	56311	chr1:145112373:+	ONLY_REF_SPLICE	YES	56	377	0.21	0.04	0.0802	0.0916	NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	TEN_ENDOMETRIUM	0.04	0.21	0.1718	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	HSP90AB1--MT-RNR2	8	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4611	0	0	1	0.0916	0.0229	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TEN_ENDOMETRIUM	0	1	0.1145	FALSE	13	9	0	364	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	DGCR8--AATF	7	5	DGCR8	1152	chr22:20067906:+	AATF	34490	chr17:35413901:+	ONLY_REF_SPLICE	YES	37	92	0.24	0.12	0.0802	0.0573	DGCR8->DGCR8_microprocessor_complex_subunit,chr22:20067755-20099400:+,AATF->Oncogene{Bushman},apoptosis_antagonizing_transcription_factor,chr17:35306175-35414171:+	TEN_ENDOMETRIUM	0.12	0.24	0.1375	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	TPST1--CCT6P1	7	4	TPST1	1324	chr7:65670509:+	CCT6P1	24732	chr7:65227934:+	ONLY_REF_SPLICE	YES	256	15	0.04	0.42	0.0802	0.0458	TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,CCT6P1->chaperonin_containing_TCP1_subunit_6_pseudogene_1,chr7:65216129-65228341:+	TEN_ENDOMETRIUM	0.04	0.42	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	5	11	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15329	66	0	0.2	0.0573	0.126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	0.2	0.1833	FALSE	231	217	16	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-TA--MT-TC	7	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0802	0.0344	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TEN_ENDOMETRIUM	1	1	0.1146	FALSE	462	80	0	856	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	FTH1--ACTB	7	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	11531	3	0	0.75	0.0802	0.0229	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	TEN_ENDOMETRIUM	0	0.75	0.1031	TRUE	1	0	0	97	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	KDELR1--BCAT2	5	10	KDELR1	3001	chr19:48892810:-	BCAT2	16825	chr19:49300532:-	INCL_NON_REF_SPLICE	YES	571	63	0.03	0.19	0.0573	0.1145	KDELR1->KDEL_endoplasmic_reticulum_protein_retention_receptor_1,chr19:48885827-48894810:-,BCAT2->branched_chain_amino_acid_transaminase_2,chr19:49298319-49314286:-	TEN_ENDOMETRIUM	0.03	0.19	0.1718	TRUE	0	0	0	1	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	5	9	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17455	66	0	0.17	0.0573	0.1031	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	0.17	0.1604	FALSE	231	217	16	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	4	13	MT-ND4	1833	chrM:11592:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	17389	0	0	1	0.0458	0.1489	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	1	0.1947	FALSE	231	217	16	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	5	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.0573	0.0916	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TEN_ENDOMETRIUM	0.87	1	0.1489	FALSE	407	2205	196	549	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	AAK1--ANXA4	6	2	AAK1	3410	chr2:69870010:-	ANXA4	48411	chr2:70031665:+	ONLY_REF_SPLICE	YES	23	5323	0.26	0	0.0687	0.0229	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},NEIGHBORS_OVERLAP:-:+:[29924],AAK1->AP2_associated_kinase_1,chr2:69688532-69901481:-,ANXA4->annexin_A4,chr2:69871557-70053596:+	TEN_ENDOMETRIUM	0	0.26	0.0916	FALSE	0	1	0	1	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	ANKHD1--AE000661.37	5	5	ANKHD1	7029	chr5:139825560:+	AE000661.37	51450	chr14:22872164:-	ONLY_REF_SPLICE	YES	121	3	0.08	0.77	0.0573	0.0573	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,AE000661.37->chr14:22849083-22951948:-	TEN_ENDOMETRIUM	0.08	0.77	0.1146	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	ATG7--SLC6A11	2	17	ATG7	18658	chr3:11383753:+	SLC6A11	48426	chr3:10960014:+	ONLY_REF_SPLICE	YES	53	6	0.26	0.76	0.0229	0.1947	ATG7->autophagy_related_7,chr3:11313995-11599139:+,SLC6A11->chr3:10857885-10982419:+,solute_carrier_family_6_member_11	TEN_ENDOMETRIUM	0.26	0.76	0.2176	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	EEF2--RPS28	6	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	4135	0	0	1	0.0687	0.0115	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	TEN_ENDOMETRIUM	0	1	0.0802	FALSE	0	0	0	100	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	5	5	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	21281	694	0	0.01	0.0573	0.0573	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	0.01	0.1146	FALSE	231	217	16	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND5--MT-ND6	5	5	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	4188	1	0	0.0573	0.0573	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	TEN_ENDOMETRIUM	0	1	0.1146	FALSE	26	124	4	93	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	STARD3--IKZF3	1	21	STARD3	1451	chr17:37793768:+	IKZF3	16107	chr17:37988404:-	ONLY_REF_SPLICE	YES	195	0	0.1	1	0.0115	0.2405	STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	TEN_ENDOMETRIUM	0.1	1	0.252	TRUE	0	1	0	1	1	TRUE	ACH-000397
TEN_ENDOMETRIUM	ANKHD1--AE000661.37	4	8	ANKHD1	7029	chr5:139825560:+	AE000661.37	49869	chr14:22887925:-	ONLY_REF_SPLICE	YES	121	0	0.09	1	0.0458	0.0916	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,AE000661.37->chr14:22849083-22951948:-	TEN_ENDOMETRIUM	0.09	1	0.1374	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	12	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	17934	0	0	1	0.0344	0.1374	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	1	0.1718	FALSE	231	217	16	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	12	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2491	66	0.01	0.19	0.0344	0.1374	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0.01	0.19	0.1718	FALSE	216	209	16	281	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	SHISA9--U91319.1	1	20	SHISA9	9974	chr16:13297406:+	U91319.1	21484	chr16:13352190:+	ONLY_REF_SPLICE	YES	26	0	0.45	1	0.0115	0.229	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	TEN_ENDOMETRIUM	0.45	1	0.2405	FALSE	0	14	0	12	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	4	7	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	18959	0	0	1	0.0458	0.0802	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	1	0.126	FALSE	231	217	16	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	RP11-381N20.2--SPRY1	5	3	RP11-381N20.2	2449	chr4:124418099:+	SPRY1	7356	chr4:124318766:+	ONLY_REF_SPLICE	YES	0	125	1	0.06	0.0573	0.0344	LOCAL_REARRANGEMENT:+:[86513],RP11-381N20.2->chr4:124411423-124443261:+,SPRY1->chr4:124317950-124324910:+,sprouty_RTK_signaling_antagonist_1	TEN_ENDOMETRIUM	0.06	1	0.0917	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	JSRP1--RPS28	5	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0573	0.0229	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	TEN_ENDOMETRIUM	1	1	0.0802	TRUE	0	1	0	84	1	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	4	6	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	17940	876	0	0.01	0.0458	0.0687	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	0.01	0.1145	FALSE	231	217	16	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	4	6	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	17993	1484	0	0.01	0.0458	0.0687	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	0.01	0.1145	FALSE	231	217	16	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	8	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20891	66	0	0.14	0.0344	0.0916	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	0.14	0.126	FALSE	231	217	16	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	5	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0573	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	1	1	0.0573	FALSE	231	205	14	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	DGCR8--AATF	3	7	DGCR8	2872	chr22:20073627:+	AATF	34490	chr17:35413901:+	INCL_NON_REF_SPLICE	YES	95	92	0.1	0.1	0.0344	0.0802	DGCR8->DGCR8_microprocessor_complex_subunit,chr22:20067755-20099400:+,AATF->Oncogene{Bushman},apoptosis_antagonizing_transcription_factor,chr17:35306175-35414171:+	TEN_ENDOMETRIUM	0.1	0.1	0.1146	TRUE	0	0	0	1	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	GMCL1--AC092431.3	4	3	GMCL1	1511	chr2:70057284:+	AC092431.3	23296	chr2:69927507:-	ONLY_REF_SPLICE	YES	62	0	0.1	1	0.0458	0.0344	GMCL1->chr2:70056774-70108528:+,germ_cell-less,_spermatogenesis_associated_1,AC092431.3->chr2:69927324-69940979:-	TEN_ENDOMETRIUM	0.1	1	0.0802	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	7	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	18989	0	0	1	0.0344	0.0802	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	1	0.1146	FALSE	231	217	16	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	ELF1--TPTE2P5	4	2	ELF1	1603	chr13:41634974:-	TPTE2P5	19688	chr13:41429951:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0458	0.0229	NEIGHBORS[10166],ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-,TPTE2P5->chr13:41396432-41495890:-,transmembrane_phosphoinositide_3-phosphatase_and_tensin_homolog_2_pseudogene_5	TEN_ENDOMETRIUM	0.86	1	0.0687	FALSE	0	0	0	1	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	6	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	19956	0	0	1	0.0344	0.0687	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	1	0.1031	FALSE	231	217	16	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	6	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	17964	803	0	0.01	0.0344	0.0687	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	0.01	0.1031	FALSE	231	217	16	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	RP11-123O10.4--GRIP1	4	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0.0229	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TEN_ENDOMETRIUM	1	1	0.0687	FALSE	416	2512	207	587	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	STARD3--IKZF3	1	14	STARD3	1167	chr17:37793484:+	IKZF3	17161	chr17:37985741:-	ONLY_REF_SPLICE	NO	116	1	0.11	0.94	0.0115	0.1603	STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	TEN_ENDOMETRIUM	0.11	0.94	0.1718	TRUE	0	1	0	1	1	TRUE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	4	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15778	66	0	0.07	0.0458	0.0115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	0.07	0.0573	FALSE	231	205	14	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	NRIP1--AF127936.7	4	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	25	0	0.17	1	0.0458	0.0115	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TEN_ENDOMETRIUM	0.17	1	0.0573	FALSE	125	705	46	456	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	RP11-381N20.1--SPRY1	4	1	RP11-381N20.1	3016	chr4:124448430:+	SPRY1	7083	chr4:124318766:+	INCL_NON_REF_SPLICE	YES	16	125	0.24	0.04	0.0458	0.0115	RP11-381N20.1->chr4:124426434-124448680:+,SPRY1->chr4:124317950-124324910:+,sprouty_RTK_signaling_antagonist_1	TEN_ENDOMETRIUM	0.04	0.24	0.0573	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	RP11-476K15.1--CTD-2015H3.2	4	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0.0115	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	TEN_ENDOMETRIUM	1	1	0.0573	FALSE	0	46	0	73	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	2	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0229	0.1031	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TEN_ENDOMETRIUM	0.92	1	0.126	FALSE	192	492	57	212	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	STARD3--IKZF3	2	9	STARD3	1167	chr17:37793484:+	IKZF3	18263	chr17:37949186:-	ONLY_REF_SPLICE	YES	116	25	0.09	0.31	0.0229	0.1031	STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	TEN_ENDOMETRIUM	0.09	0.31	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	LUC7L3--CRHR1	4	0	LUC7L3	1288	chr17:48797192:+	CRHR1	28991	chr17:43884376:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0	LUC7L3->LUC7_like_3_pre-mRNA_splicing_factor,chr17:48796905-48833574:+,CRHR1->chr17:43699267-43913194:+,corticotropin_releasing_hormone_receptor_1	TEN_ENDOMETRIUM	1	1	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	4	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	1	1	0.0458	FALSE	231	204	14	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	ST3GAL6-AS1--DCBLD2	4	0	ST3GAL6-AS1	1226	chr3:98451270:-	DCBLD2	13222	chr3:98568442:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:-:[63290],ST3GAL6-AS1->ST3GAL6_antisense_RNA_1,chr3:98433174-98451495:-,DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2	TEN_ENDOMETRIUM	1	1	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	FBXO42--SBNO2	3	3	FBXO42	1200	chr1:16678750:-	SBNO2	23675	chr19:1154401:-	ONLY_REF_SPLICE	YES	60	95	0.09	0.06	0.0344	0.0344	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	TEN_ENDOMETRIUM	0.06	0.09	0.0688	TRUE	0	0	0	1	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	17455	1910	0	0	0.0344	0.0344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	0	0.0688	FALSE	231	217	16	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0.0344	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TEN_ENDOMETRIUM	1	1	0.0688	FALSE	462	80	0	856	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	2	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0229	0.0802	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TEN_ENDOMETRIUM	0.9	1	0.1031	FALSE	467	2173	244	435	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	CCNF--ABCA17P	1	10	CCNF	4434	chr16:2485874:+	ABCA17P	39725	chr16:2456604:+	ONLY_REF_SPLICE	YES	102	3	0.1	0.79	0.0115	0.1145	LOCAL_REARRANGEMENT:+:[2695],CCNF->Oncogene{Bushman},chr16:2479395-2508855:+,cyclin_F,ABCA17P->ATP_binding_cassette_subfamily_A_member_17,_pseudogene,chr16:2389151-2476700:+	TEN_ENDOMETRIUM	0.1	0.79	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	FBXW4--C10orf76	1	10	FBXW4	6143	chr10:103427643:-	C10orf76	38990	chr10:103649247:-	ONLY_REF_SPLICE	YES	37	61	0.23	0.15	0.0115	0.1145	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Brain_-_Hippocampus=1},FBXW4->F-box_and_WD_repeat_domain_containing_4,Oncogene{Bushman},chr10:103370423-103455052:-,C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76	TEN_ENDOMETRIUM	0.15	0.23	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	FTH1--ACTB	3	1	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	10494	3	0	0.57	0.0344	0.0115	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	TEN_ENDOMETRIUM	0	0.57	0.0459	FALSE	1	0	0	97	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	1	MT-ND4	1266	chrM:11025:+	MT-ATP8	5466	chrM:8453:+	INCL_NON_REF_SPLICE	YES	15273	0	0	1	0.0344	0.0115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	1	0.0459	FALSE	231	205	14	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13088	66	0	0.06	0.0344	0.0115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TEN_ENDOMETRIUM	0	0.06	0.0459	FALSE	230	198	14	283	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	AC104389.28--HBG1	3	0	AC104389.28	1084	chr11:5526799:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0344	0	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	TEN_ENDOMETRIUM	1	1	0.0344	FALSE	0	1	0	13	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	C3--ALDOA	3	0	C3	9040	chr19:6712304:-	ALDOA	43391	chr16:30080226:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	GTEx&tcga_normals:2/3694=0.05%,C3->chr19:6677715-6730573:-,complement_component_3,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	TEN_ENDOMETRIUM	1	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TEN_ENDOMETRIUM	1	1	0.0344	FALSE	462	80	0	856	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	AAK1--ANXA4	2	3	AAK1	3410	chr2:69870010:-	ANXA4	45145	chr2:70008652:+	ONLY_REF_SPLICE	YES	23	662	0.18	0.01	0.0229	0.0344	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},NEIGHBORS_OVERLAP:-:+:[29924],AAK1->AP2_associated_kinase_1,chr2:69688532-69901481:-,ANXA4->annexin_A4,chr2:69871557-70053596:+	TEN_ENDOMETRIUM	0.01	0.18	0.0573	FALSE	0	0	0	1	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	RP11-120D5.1--MID1	2	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	6	12	0.45	0.29	0.0229	0.0344	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	TEN_ENDOMETRIUM	0.29	0.45	0.0573	FALSE	0	23	1	67	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	FBXW4--C10orf76	1	6	FBXW4	5048	chr10:103432672:-	C10orf76	38990	chr10:103649247:-	ONLY_REF_SPLICE	YES	63	61	0.1	0.1	0.0115	0.0687	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Brain_-_Hippocampus=1},FBXW4->F-box_and_WD_repeat_domain_containing_4,Oncogene{Bushman},chr10:103370423-103455052:-,C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76	TEN_ENDOMETRIUM	0.1	0.1	0.0802	TRUE	0	0	0	1	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	RP11-6N13.1--CTD-2374C24.1	1	6	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	NO	1	0	0.88	1	0.0115	0.0687	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	TEN_ENDOMETRIUM	0.88	1	0.0802	TRUE	5	12	0	42	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	SYT17--MFHAS1	2	2	SYT17	7856	chr16:19191861:+	MFHAS1	26582	chr8:8655001:-	ONLY_REF_SPLICE	YES	49	209	0.08	0.02	0.0229	0.0229	SYT17->chr16:19179293-19279652:+,synaptotagmin_17,MFHAS1->Oncogene{Bushman},chr8:8640864-8751155:-,malignant_fibrous_histiocytoma_amplified_sequence_1	TEN_ENDOMETRIUM	0.02	0.08	0.0458	TRUE	0	0	0	1	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	NARS--TMX3	1	5	NARS	1506	chr18:55288940:-	TMX3	26404	chr18:66358598:-	ONLY_REF_SPLICE	YES	117	57	0.05	0.1	0.0115	0.0573	NARS->asparaginyl-tRNA_synthetase,chr18:55267888-55289445:-,TMX3->chr18:66340925-66382535:-,thioredoxin_related_transmembrane_protein_3	TEN_ENDOMETRIUM	0.05	0.1	0.0688	TRUE	0	0	0	1	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	YWHAE--CRK	2	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	3622	199	0	0.01	0.0229	0.0115	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	TEN_ENDOMETRIUM	0	0.01	0.0344	FALSE	6	50	7	115	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	CREB1--RXFP1	2	0	CREB1	1398	chr2:208394858:+	RXFP1	38006	chr4:159529124:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	CREB1->Oncogene{Bushman},cAMP_responsive_element_binding_protein_1,chr2:208394461-208468155:+,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	TEN_ENDOMETRIUM	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	CTNNA1--KLHL23	2	0	CTNNA1	4381	chr5:138059314:+	KLHL23	45598	chr2:170591523:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,KLHL23->chr2:170550998-170633499:+,kelch_like_family_member_23	TEN_ENDOMETRIUM	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	LEPR--MEIS2	2	0	LEPR	2252	chr1:65891061:+	MEIS2	47567	chr15:37329160:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LEPR->chr1:65886248-66107242:+,leptin_receptor,MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-	TEN_ENDOMETRIUM	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	TPH2--TRHDE	1	4	TPH2	20489	chr12:72469488:+	TRHDE	37350	chr12:72680461:+	ONLY_REF_SPLICE	YES	1	453	0.83	0.01	0.0115	0.0458	NEIGHBORS_OVERLAP:+:+:[99352],TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	TEN_ENDOMETRIUM	0.01	0.83	0.0573	FALSE	0	4	0	3	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	TRIM26--MYL12B	2	0	TRIM26	1123	chr6:30181082:-	MYL12B	16967	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	TRIM26->chr6:30152232-30181204:-,tripartite_motif_containing_26,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	TEN_ENDOMETRIUM	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	UQCRC2--CCDC43	2	0	UQCRC2	14109	chr16:21987564:+	CCDC43	28224	chr17:42750893:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II,CCDC43->chr17:42750437-42767147:-,coiled-coil_domain_containing_43	TEN_ENDOMETRIUM	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	YIPF6--BAZ1B	2	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	TEN_ENDOMETRIUM	1	1	0.0229	TRUE	1	23	1	24	8	FALSE	ACH-000397
TEN_ENDOMETRIUM	RP11-476K15.1--CTD-2015H3.2	1	2	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0.0229	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	TEN_ENDOMETRIUM	1	1	0.0344	FALSE	0	46	0	73	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	ELF1--TPTE2P5	1	1	ELF1	1603	chr13:41634974:-	TPTE2P5	21843	chr13:41411021:-	ONLY_REF_SPLICE	NO	1	1	0.67	0.67	0.0115	0.0115	NEIGHBORS[10166],ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-,TPTE2P5->chr13:41396432-41495890:-,transmembrane_phosphoinositide_3-phosphatase_and_tensin_homolog_2_pseudogene_5	TEN_ENDOMETRIUM	0.67	0.67	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	KMT2A--CD3G	1	1	KMT2A	7746	chr11:118339559:+	CD3G	53622	chr11:118219742:+	ONLY_REF_SPLICE	YES	32	0	0.06	1	0.0115	0.0115	LOCAL_REARRANGEMENT:+:[81329],KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,CD3G->CD3g_molecule,chr11:118215059-118225876:+	TEN_ENDOMETRIUM	0.06	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000397
TEN_ENDOMETRIUM	METTL24--CDK19	1	1	METTL24	4212	chr6:110636545:-	CDK19	21283	chr6:110948348:-	ONLY_REF_SPLICE	YES	0	58	1	0.03	0.0115	0.0115	METTL24->chr6:110567131-110679475:-,methyltransferase_like_24,CDK19->chr6:110931181-111137161:-,cyclin-dependent_kinase_19	TEN_ENDOMETRIUM	0.03	1	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	PPCDC--PRPF38A	1	1	PPCDC	6417	chr15:75341062:+	PRPF38A	21307	chr1:52881010:+	ONLY_REF_SPLICE	YES	124	181	0.02	0.01	0.0115	0.0115	PPCDC->chr15:75315896-75409803:+,phosphopantothenoylcysteine_decarboxylase,PRPF38A->chr1:52870236-52886511:+,pre-mRNA_processing_factor_38A	TEN_ENDOMETRIUM	0.01	0.02	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	RB1--ITM2B	1	1	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	89	3828	0.02	0	0.0115	0.0115	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	TEN_ENDOMETRIUM	0	0.02	0.023	FALSE	53	73	8	19	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	34	1	0.06	0.0115	0.0115	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TEN_ENDOMETRIUM	0.06	1	0.023	TRUE	458	1351	185	561	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	RP11-93L9.1--SPRY1	1	1	RP11-93L9.1	3263	chr4:124582988:+	SPRY1	19596	chr4:124318766:+	ONLY_REF_SPLICE	NO	13	125	0.13	0.02	0.0115	0.0115	RP11-93L9.1->chr4:124571422-124851561:+,SPRY1->chr4:124317950-124324910:+,sprouty_RTK_signaling_antagonist_1	TEN_ENDOMETRIUM	0.02	0.13	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	TGIF1--HIPK3	1	1	TGIF1	5335	chr18:3447795:+	HIPK3	23295	chr11:33350056:+	ONLY_REF_SPLICE	YES	46	77	0.04	0.03	0.0115	0.0115	TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+,HIPK3->chr11:33278218-33378569:+,homeodomain_interacting_protein_kinase_3	TEN_ENDOMETRIUM	0.03	0.04	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000397
TEN_ENDOMETRIUM	ZNF92--PHTF2	1	1	ZNF92	1202	chr7:64838913:+	PHTF2	11246	chr7:77469538:+	ONLY_REF_SPLICE	YES	33	28	0.06	0.07	0.0115	0.0115	ZNF92->chr7:64838712-64866038:+,zinc_finger_protein_92,PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2	TEN_ENDOMETRIUM	0.06	0.07	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000397
KP3_PANCREAS	NCL--PTMA	92	1	NCL	6884	chr2:232325380:-	PTMA	22009	chr2:232576646:+	INCL_NON_REF_SPLICE	YES	964	2339	0.09	0.04	1.3181	0.0143	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KP3_PANCREAS	0.04	0.09	1.3324	TRUE	1	0	0	7	0	FALSE	ACH-000108
KP3_PANCREAS	NCL--PTMA	84	1	NCL	6884	chr2:232325380:-	PTMA	21433	chr2:232576070:+	INCL_NON_REF_SPLICE	YES	964	2563	0.08	0.03	1.2034	0.0143	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KP3_PANCREAS	0.03	0.08	1.2177	TRUE	1	0	0	7	0	FALSE	ACH-000108
KP3_PANCREAS	TIMM23B--LINC00843	47	10	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6734	0.1433	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KP3_PANCREAS	1	1	0.8167	TRUE	508	994	45	981	0	FALSE	ACH-000108
KP3_PANCREAS	MT-TA--MT-TC	38	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5444	0.0573	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KP3_PANCREAS	1	1	0.6017	FALSE	462	80	0	856	0	FALSE	ACH-000108
KP3_PANCREAS	RP11-96H19.1--RP11-446N19.1	33	21	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	6	0	0.9	1	0.4728	0.3009	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KP3_PANCREAS	0.9	1	0.7737	FALSE	515	4851	409	746	0	FALSE	ACH-000108
KP3_PANCREAS	TIMM23--RP11-464F9.1	30	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	211	6	0.13	0.84	0.4298	0.0143	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KP3_PANCREAS	0.13	0.84	0.4441	TRUE	519	3926	326	965	0	FALSE	ACH-000108
KP3_PANCREAS	MT-ND4--MT-ND4L	6	81	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.086	1.1605	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KP3_PANCREAS	0.97	1	1.2465	FALSE	344	821	44	306	0	FALSE	ACH-000108
KP3_PANCREAS	MT-ND6--MT-TE	17	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2436	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP3_PANCREAS	1	1	0.2436	FALSE	499	1288	110	792	0	FALSE	ACH-000108
KP3_PANCREAS	RP11-123O10.4--GRIP1	13	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1862	0.0287	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KP3_PANCREAS	1	1	0.2149	FALSE	416	2512	207	587	0	FALSE	ACH-000108
KP3_PANCREAS	CBLC--CEACAM16	11	9	CBLC	7355	chr19:45295771:+	CEACAM16	18857	chr19:45211133:+	ONLY_REF_SPLICE	YES	3	0	0.87	1	0.1576	0.1289	LOCAL_REARRANGEMENT:+:[67140],CBLC->Cbl_proto-oncogene_C,Oncogene{Bushman},chr19:45281126-45303891:+,CEACAM16->carcinoembryonic_antigen_related_cell_adhesion_molecule_16,chr19:45202421-45213986:+	KP3_PANCREAS	0.87	1	0.2865	TRUE	0	0	0	1	0	TRUE	ACH-000108
KP3_PANCREAS	NRIP1--AF127936.7	12	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.1719	0.0143	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KP3_PANCREAS	0.81	1	0.1862	FALSE	292	1546	117	613	0	FALSE	ACH-000108
KP3_PANCREAS	MT-CO3--MT-ATP6	5	25	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	4	0.88	0.88	0.0716	0.3582	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP3_PANCREAS	0.88	0.88	0.4298	FALSE	189	492	56	216	0	FALSE	ACH-000108
KP3_PANCREAS	MT-CO3--MT-ATP6	10	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.71	1	0.1433	0.0287	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP3_PANCREAS	0.71	1	0.172	FALSE	189	492	56	216	0	FALSE	ACH-000108
KP3_PANCREAS	NCL--PTMA	10	1	NCL	6884	chr2:232325380:-	PTMA	22525	chr2:232577162:+	ONLY_REF_SPLICE	YES	964	2277	0.01	0	0.1433	0.0143	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KP3_PANCREAS	0	0.01	0.1576	TRUE	1	0	0	7	0	FALSE	ACH-000108
KP3_PANCREAS	RP11-120D5.1--MID1	10	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	1	0.85	0.92	0.1433	0.0143	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KP3_PANCREAS	0.85	0.92	0.1576	FALSE	16	356	14	466	0	FALSE	ACH-000108
KP3_PANCREAS	C15orf57--CBX3	5	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	53	16	0.28	0.57	0.0716	0.2292	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KP3_PANCREAS	0.28	0.57	0.3008	TRUE	267	562	48	632	0	FALSE	ACH-000108
KP3_PANCREAS	MT-ND4--MT-ATP8	8	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13398	23	0	0.32	0.1146	0.043	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP3_PANCREAS	0	0.32	0.1576	FALSE	231	217	16	283	0	FALSE	ACH-000108
KP3_PANCREAS	RP11-96H19.1--RP11-446N19.1	3	23	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0.3295	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KP3_PANCREAS	1	1	0.3725	FALSE	467	2173	244	435	0	FALSE	ACH-000108
KP3_PANCREAS	C15orf57--CBX3	6	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	51	16	0.24	0.5	0.086	0.1433	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KP3_PANCREAS	0.24	0.5	0.2293	TRUE	267	562	48	632	0	FALSE	ACH-000108
KP3_PANCREAS	MT-ND4--MT-ND4L	3	22	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	22	0	0.53	1	0.043	0.3152	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KP3_PANCREAS	0.53	1	0.3582	FALSE	344	826	44	306	0	FALSE	ACH-000108
KP3_PANCREAS	MT-CO3--MT-ATP6	3	21	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	3	6	0.89	0.8	0.043	0.3009	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP3_PANCREAS	0.8	0.89	0.3439	FALSE	189	492	56	216	0	FALSE	ACH-000108
KP3_PANCREAS	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1146	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP3_PANCREAS	1	1	0.1146	FALSE	230	198	14	283	0	FALSE	ACH-000108
KP3_PANCREAS	MT-ND4--MT-ATP8	7	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13880	3	0	0.77	0.1003	0.043	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP3_PANCREAS	0	0.77	0.1433	FALSE	231	217	16	283	0	FALSE	ACH-000108
KP3_PANCREAS	MT-CO3--MT-ATP6	5	7	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	4	0	0.75	1	0.0716	0.1003	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP3_PANCREAS	0.75	1	0.1719	FALSE	189	492	56	216	0	FALSE	ACH-000108
KP3_PANCREAS	HIPK3--ADPGK	6	2	HIPK3	5118	chr11:33309057:+	ADPGK	27135	chr15:73067438:-	ONLY_REF_SPLICE	YES	26	68	0.24	0.11	0.086	0.0287	{Klijn_CCL:Pancreas=1},HIPK3->chr11:33278218-33378569:+,homeodomain_interacting_protein_kinase_3,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	KP3_PANCREAS	0.11	0.24	0.1147	TRUE	0	0	0	1	0	TRUE	ACH-000108
KP3_PANCREAS	MT-ND6--MT-TE	6	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.086	0.0143	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP3_PANCREAS	0.88	1	0.1003	FALSE	499	1288	110	792	0	FALSE	ACH-000108
KP3_PANCREAS	NCL--PTMA	6	1	NCL	6884	chr2:232325380:-	PTMA	21982	chr2:232576619:+	INCL_NON_REF_SPLICE	NO	964	2439	0.01	0	0.086	0.0143	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KP3_PANCREAS	0	0.01	0.1003	FALSE	1	0	0	7	0	FALSE	ACH-000108
KP3_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	21	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	6	0	0.79	1	0.0143	0.3009	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KP3_PANCREAS	0.79	1	0.3152	FALSE	407	2205	196	549	0	FALSE	ACH-000108
KP3_PANCREAS	MT-ND4--MT-ATP8	6	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.086	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP3_PANCREAS	1	1	0.086	FALSE	230	193	14	283	0	FALSE	ACH-000108
KP3_PANCREAS	TMSB10--TMSB4X	6	0	TMSB10	1438	chr2:85133186:+	TMSB4X	6247	chrX:12994426:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.086	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	KP3_PANCREAS	1	1	0.086	TRUE	0	1	0	17	1	TRUE	ACH-000108
KP3_PANCREAS	MT-TA--MT-TC	5	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0716	0.0143	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KP3_PANCREAS	1	1	0.0859	FALSE	462	80	0	856	0	FALSE	ACH-000108
KP3_PANCREAS	MT-ND4--MT-ATP8	5	0	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0716	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP3_PANCREAS	1	1	0.0716	FALSE	231	217	16	283	0	FALSE	ACH-000108
KP3_PANCREAS	MT-ND4--MT-ATP8	4	3	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12699	23	0	0.23	0.0573	0.043	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP3_PANCREAS	0	0.23	0.1003	FALSE	231	217	16	283	0	FALSE	ACH-000108
KP3_PANCREAS	MT-ND4--MT-ND4L	3	7	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	70	0	0.12	1	0.043	0.1003	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KP3_PANCREAS	0.12	1	0.1433	FALSE	344	827	44	306	0	FALSE	ACH-000108
KP3_PANCREAS	MT-TA--MT-TC	3	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.043	0.0716	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KP3_PANCREAS	1	1	0.1146	FALSE	462	80	0	856	0	FALSE	ACH-000108
KP3_PANCREAS	SLC1A5--MT-ND4L	4	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	551	0	0.01	1	0.0573	0.0143	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KP3_PANCREAS	0.01	1	0.0716	FALSE	0	0	0	189	0	FALSE	ACH-000108
KP3_PANCREAS	MT-CO3--MT-ATP6	3	4	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	7	0	0.5	1	0.043	0.0573	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KP3_PANCREAS	0.5	1	0.1003	FALSE	189	492	56	216	0	FALSE	ACH-000108
KP3_PANCREAS	MT-ND4--MT-ATP8	4	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0573	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KP3_PANCREAS	1	1	0.0573	FALSE	231	205	14	283	0	FALSE	ACH-000108
KP3_PANCREAS	MT-ND4--MT-ND4L	4	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0573	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KP3_PANCREAS	1	1	0.0573	FALSE	344	821	44	306	0	FALSE	ACH-000108
KP3_PANCREAS	TMSB10--TMSB4X	3	2	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	3445	5105	0	0	0.043	0.0287	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	KP3_PANCREAS	0	0	0.0717	FALSE	0	1	0	17	1	FALSE	ACH-000108
KP3_PANCREAS	MT-ND6--MT-TE	3	1	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.043	0.0143	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP3_PANCREAS	0.8	1	0.0573	FALSE	499	1288	110	792	0	FALSE	ACH-000108
KP3_PANCREAS	NRIP1--AF127936.7	3	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	21	0	0.16	1	0.043	0.0143	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KP3_PANCREAS	0.16	1	0.0573	FALSE	125	705	46	456	0	FALSE	ACH-000108
KP3_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP3_PANCREAS	1	1	0.043	FALSE	499	1288	110	792	0	FALSE	ACH-000108
KP3_PANCREAS	RP11-275N1.1--NEBL	3	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	KP3_PANCREAS	1	1	0.043	TRUE	0	0	0	21	0	FALSE	ACH-000108
KP3_PANCREAS	RP11-114H23.1--RP11-114H23.2	2	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0.0287	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	KP3_PANCREAS	1	1	0.0574	FALSE	81	155	12	160	0	FALSE	ACH-000108
KP3_PANCREAS	RP11-275N1.1--NEBL	1	5	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	6	3	0.5	0.67	0.0143	0.0716	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	KP3_PANCREAS	0.5	0.67	0.0859	TRUE	0	2	0	25	2	FALSE	ACH-000108
KP3_PANCREAS	HIPK3--CAT	2	0	HIPK3	6242	chr11:33350179:+	CAT	25535	chr11:34470739:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	HIPK3->chr11:33278218-33378569:+,homeodomain_interacting_protein_kinase_3,CAT->catalase,chr11:34460472-34493609:+	KP3_PANCREAS	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000108
KP3_PANCREAS	LMNA--SMIM12	2	0	LMNA	8776	chr1:156085065:+	SMIM12	27289	chr1:35321583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	LMNA->chr1:156052364-156109880:+,lamin_A/C,SMIM12->chr1:35178338-35325417:-,small_integral_membrane_protein_12	KP3_PANCREAS	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000108
KP3_PANCREAS	MINOS1--ZNF638	2	0	MINOS1	1127	chr1:19923603:+	ZNF638	25312	chr2:71582849:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	KP3_PANCREAS	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000108
KP3_PANCREAS	SCARB1--UBC	2	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	KP3_PANCREAS	1	1	0.0287	TRUE	55	66	6	101	0	FALSE	ACH-000108
KP3_PANCREAS	C16orf72--REV1	1	1	C16orf72	3630	chr16:9197116:+	REV1	22246	chr2:100052403:-	ONLY_REF_SPLICE	NO	65	26	0.03	0.07	0.0143	0.0143	C16orf72->chr16:9185505-9215497:+,chromosome_16_open_reading_frame_72,REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-	KP3_PANCREAS	0.03	0.07	0.0286	TRUE	0	0	0	1	0	FALSE	ACH-000108
KP3_PANCREAS	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	55	37	0.04	0.05	0.0143	0.0143	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	KP3_PANCREAS	0.04	0.05	0.0286	FALSE	118	557	29	88	0	FALSE	ACH-000108
KP3_PANCREAS	CRIM1--FEZ2	1	1	CRIM1	21418	chr2:36764689:+	FEZ2	41948	chr2:36785656:-	ONLY_REF_SPLICE	YES	398	214	0.01	0.01	0.0143	0.0143	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	KP3_PANCREAS	0.01	0.01	0.0286	FALSE	0	0	0	2	0	FALSE	ACH-000108
KP3_PANCREAS	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	22	0	0.08	1	0.0143	0.0143	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KP3_PANCREAS	0.08	1	0.0286	FALSE	164	806	69	479	0	FALSE	ACH-000108
KP3_PANCREAS	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0143	0.0143	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KP3_PANCREAS	1	1	0.0286	TRUE	62	24	1	171	0	FALSE	ACH-000108
KP3_PANCREAS	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	19	0	0.1	1	0.0143	0.0143	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	KP3_PANCREAS	0.1	1	0.0286	FALSE	272	151	14	158	0	FALSE	ACH-000108
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	117	32	KMT2A	16644	chr11:118353210:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	16	0	0.9	1	1.4369	0.393	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	1.8299	TRUE	0	1	0	1	1	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TKTL1--FLNA	3	426	TKTL1	3920	chrX:153537794:+	FLNA	38431	chrX:153577352:-	INCL_NON_REF_SPLICE	YES	0	2	1	1	0.0368	5.2319	LOCAL_INVERSION:+:-:[18192],TKTL1->chrX:153524024-153558700:+,transketolase-like_1,FLNA->chrX:153576892-153603006:-,filamin_A	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	5.2687	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTBP2--PTEN	91	25	CTBP2	8057	chr10:126799559:-	PTEN	33854	chr10:89690803:+	ONLY_REF_SPLICE	YES	19	43	0.86	0.73	1.1176	0.307	CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-,PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.86	1.4246	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B4GALT1--FAM205CP	81	47	B4GALT1	2835	chr9:33135187:-	FAM205CP	15947	chr9:34895081:-	ONLY_REF_SPLICE	YES	47	0	0.73	1	0.9948	0.5772	B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,FAM205CP->chr9:34889061-34895775:-	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	1.572	TRUE	0	1	0	1	1	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AP000345.1	82	3	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	1.0071	0.0368	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.0439	TRUE	4	17	0	31	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX39B--CSNK2A1	59	25	DDX39B	6942	chr6:31503144:-	CSNK2A1	19777	chr20:489304:-	ONLY_REF_SPLICE	YES	761	67	0.1	0.56	0.7246	0.307	DDX39B->DEAD-box_helicase_39B,chr6:31497996-31510225:-,CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.56	1.0316	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	45	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5527	0.1351	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6878	TRUE	508	994	45	981	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	46	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5649	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5649	TRUE	0	0	0	518	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	40	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4913	0.0614	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5527	FALSE	462	80	0	856	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	38	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4667	0.0123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.479	FALSE	499	1288	110	792	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	27	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3316	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3316	TRUE	519	3926	326	965	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTBP2--PTEN	23	0	CTBP2	1852	chr10:126848888:-	PTEN	33854	chr10:89690803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2825	0	CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-,PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2825	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	18	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	88	39	0.25	0.43	0.2211	0.1474	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.43	0.3685	TRUE	267	562	48	632	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	16	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1965	0.0123	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2088	TRUE	477	1352	189	275	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1597	0.0123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.172	FALSE	499	1288	110	792	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	10	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	80	40	0.2	0.33	0.1228	0.1228	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.33	0.2456	TRUE	267	562	48	632	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	12	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1474	0.0246	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.172	FALSE	416	2512	207	587	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAP1--POLR1E	11	5	UBAP1	1236	chr9:34179238:+	POLR1E	14923	chr9:37486036:+	INCL_NON_REF_SPLICE	YES	78	3	0.17	0.84	0.1351	0.0614	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,POLR1E->chr9:37485932-37503694:+,polymerase_(RNA)_I_subunit_E	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.84	0.1965	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTBP2--PTEN	5	28	CTBP2	10372	chr10:126776760:-	PTEN	33854	chr10:89690803:+	ONLY_REF_SPLICE	YES	18	43	0.65	0.43	0.0614	0.3439	CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-,PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.65	0.4053	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP1-197B17.3--RPAP3	12	0	RP1-197B17.3	1079	chr12:48099946:+	RPAP3	14332	chr12:48096629:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1474	0	LOCAL_INVERSION:+:-:[24],RP1-197B17.3->chr12:48099868-48136077:+,RPAP3->RNA_polymerase_II_associated_protein_3,chr12:48057070-48099844:-	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1474	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	17	MT-ND6	1195	chrM:14479:-	MT-TE	4552	chrM:14716:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0737	0.2088	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.2825	FALSE	499	1288	110	792	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNAPC3--KMT2A	9	2	SNAPC3	9539	chr9:15458065:+	KMT2A	37837	chr11:118359329:+	ONLY_REF_SPLICE	YES	48	8	0.19	0.58	0.1105	0.0246	SNAPC3->Oncogene{Bushman},chr9:15422702-15465951:+,small_nuclear_RNA_activating_complex_polypeptide_3,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.58	0.1351	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VAV2--ELAVL2	8	6	VAV2	1530	chr9:136857197:-	ELAVL2	44946	chr9:23762247:-	ONLY_REF_SPLICE	YES	16	1	0.47	0.93	0.0983	0.0737	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,ELAVL2->ELAV_like_neuron-specific_RNA_binding_protein_2,chr9:23690102-23826335:-	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.93	0.172	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.086	0.086	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.172	FALSE	499	1288	110	792	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	7	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.086	0.0737	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.1597	FALSE	515	4851	409	746	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	4	17	KMT2A	16241	chr11:118352807:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	13	0	0.62	1	0.0491	0.2088	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.2579	TRUE	0	1	0	1	1	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.086	0.0368	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1228	FALSE	462	80	0	856	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AP000345.1	6	6	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	6	0	0.67	1	0.0737	0.0737	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.1474	TRUE	0	8	0	37	1	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	16	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0368	0.1965	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2333	FALSE	499	1288	110	792	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGB2--FTL	5	0	ITGB2	22865	chr21:46306705:-	FTL	26825	chr19:49468680:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0614	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,ITGB2->chr21:46305868-46351904:-,integrin_subunit_beta_2,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0614	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	4	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0491	0.0491	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.0982	FALSE	499	1288	110	792	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0614	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0614	FALSE	462	80	0	856	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0614	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0614	FALSE	292	1546	117	613	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.0368	0.0983	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	0.1351	FALSE	407	2205	196	549	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0491	FALSE	499	1288	110	792	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYL6--CSDE1	4	0	MYL6	2462	chr12:56553406:+	CSDE1	17351	chr1:115282346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0491	0	MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0491	TRUE	0	1	0	3	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAGLN2--MT-ND5	4	0	TAGLN2	6046	chr1:159888579:-	MT-ND5	10456	chrM:13064:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0	TAGLN2->chr1:159887897-159895522:-,transgelin_2,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0491	FALSE	0	0	0	9	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	3	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0.0368	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0736	FALSE	499	1288	110	792	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-634B7.4--TRIM58	3	3	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	2	11	0.75	0.35	0.0368	0.0368	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.75	0.0736	TRUE	158	633	76	73	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COL9A2--ZFP69B	3	2	COL9A2	11732	chr1:40771387:-	ZFP69B	20515	chr1:40916328:+	ONLY_REF_SPLICE	YES	1081	1	0	0.83	0.0368	0.0246	COL9A2->chr1:40766159-40783488:-,collagen_type_IX_alpha_2,ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.83	0.0614	FALSE	0	0	0	1	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AP000345.1	2	4	AP003900.6	2187	chr21:11172043:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.0246	0.0491	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	1	0.0737	TRUE	1	2	0	16	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTBP2--PTEN	3	0	CTBP2	1344	chr10:126849396:-	PTEN	33854	chr10:89690803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0368	0	CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-,PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HERC1--DAPK2	3	0	HERC1	16534	chr15:64026923:-	DAPK2	92020	chr15:64332466:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0368	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:-:[73094],HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IRF2BP2--PTMA	3	0	IRF2BP2	3139	chr1:234743133:-	PTMA	10899	chr2:232573246:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	FALSE	499	1288	110	792	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	FALSE	499	1288	110	792	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTBP2--PTEN	1	5	CTBP2	5741	chr10:126822081:-	PTEN	33854	chr10:89690803:+	ONLY_REF_SPLICE	YES	11	43	0.35	0.12	0.0123	0.0614	CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-,PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.35	0.0737	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0.0123	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0369	TRUE	160	277	29	98	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	2	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	FALSE	0	24	0	62	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTBP2--PTEN	1	1	CTBP2	3396	chr10:126847204:-	PTEN	33854	chr10:89690803:+	ONLY_REF_SPLICE	YES	7	43	0.22	0.04	0.0123	0.0123	CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-,PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.22	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	1	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	NO	45	50	0.04	0.04	0.0123	0.0123	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.04	0.0246	TRUE	3	48	0	26	0	FALSE	ACH-000146
THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP6-206I17.1--SEC22B	1	1	RP6-206I17.1	2217	chr1:143744201:-	SEC22B	15471	chr1:145109524:+	ONLY_REF_SPLICE	YES	5	363	0.29	0.01	0.0123	0.0123	GTEx_FI:{Esophagus=[count:4=pct:1.0],Brain=[count:3=pct:0.5],Blood_Vessel=[count:3=pct:0.8],Pancreas=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},RP6-206I17.1->chr1:143647638-143745417:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.29	0.0246	FALSE	10	13	0	2	0	FALSE	ACH-000146
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DISC1FP1--STX8	537	62	DISC1FP1	1086	chr11:89984485:+	STX8	26545	chr17:9408479:-	ONLY_REF_SPLICE	YES	1	131	1	0.82	6.933	0.8005	DISC1FP1->DISC1_fusion_partner_1_(non-protein_coding),chr11:89984400-90648220:+,STX8->chr17:9153788-9479908:-,syntaxin_8	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	7.7335	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	97	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2523	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2523	TRUE	0	0	0	518	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DISC1FP1--STX8	79	38	DISC1FP1	1086	chr11:89984485:+	STX8	27670	chr17:9395238:-	ONLY_REF_SPLICE	YES	1	184	0.99	0.39	1.0199	0.4906	DISC1FP1->DISC1_fusion_partner_1_(non-protein_coding),chr11:89984400-90648220:+,STX8->chr17:9153788-9479908:-,syntaxin_8	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.99	1.5105	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	45	63	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	92	24	0.54	0.82	0.581	0.8134	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.82	1.3944	TRUE	267	562	48	632	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIF13A--TPMT	46	55	KIF13A	19301	chr6:17817251:-	TPMT	51621	chr6:18149402:-	ONLY_REF_SPLICE	YES	36	0	0.74	1	0.5939	0.7101	{Klijn_CCL:Head-Neck=1,Lymphoid=1},KIF13A->chr6:17759414-17987854:-,kinesin_family_member_13A,TPMT->chr6:18128542-18155305:-,thiopurine_S-methyltransferase	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	1.304	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARIH2--DAG1	29	35	ARIH2	7108	chr3:48965246:+	DAG1	38058	chr3:49547852:+	ONLY_REF_SPLICE	YES	120	36	0.35	0.64	0.3744	0.4519	ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.64	0.8263	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	20	51	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	93	25	0.43	0.74	0.2582	0.6584	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.74	0.9166	TRUE	267	562	48	632	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	27	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.3486	0.2453	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.5939	TRUE	508	994	45	981	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	27	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3486	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3486	FALSE	462	80	0	856	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARIH2--DAG1	15	45	ARIH2	9799	chr3:48982614:+	DAG1	38058	chr3:49547852:+	ONLY_REF_SPLICE	YES	104	36	0.37	0.62	0.1937	0.581	ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.62	0.7747	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANK1--CCDC144NL	18	25	ANK1	34232	chr8:41545674:-	CCDC144NL	52430	chr17:20796775:-	ONLY_REF_SPLICE	YES	521	0	0.08	1	0.2324	0.3228	ANK1->ankyrin_1,chr8:41510739-41754280:-,CCDC144NL->chr17:20739760-20799453:-,coiled-coil_domain_containing_144_family,_N-terminal_like	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.5552	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DPH7--PTP4A3	24	0	DPH7	1297	chr9:140473091:-	PTP4A3	14726	chr8:142431487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3099	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:10=pct:2.7],Heart=[count:7=pct:2.8],Pituitary=[count:4=pct:7.7],Nerve=[count:2=pct:1.2],Esophagus=[count:2=pct:0.5],Colon=[count:2=pct:1.0],Lung=[count:2=pct:1.2],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Kidney=[count:1=pct:7.1],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},GTEx_v2:{count=46;pct=0.53%;dist=Artery_-_Tibial=9,Heart_-_Atrial_Appendage=9,Pituitary=6,Cells_-_EBV-transformed_lymphocytes=5,Artery_-_Aorta=3,Lung=2,Artery_-_Coronary=2,Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hypothalamus=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1,Testis=1},DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7,PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3099	TRUE	29	213	5	17	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD11--THBS2	21	7	ANKRD11	4629	chr16:89484692:-	THBS2	38393	chr6:169653991:-	ONLY_REF_SPLICE	YES	13	2	0.68	0.93	0.2711	0.0904	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,THBS2->Oncogene{Bushman},chr6:169615875-169654139:-,thrombospondin_2	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	0.93	0.3615	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	17	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	363	7	0.05	0.75	0.2195	0.0516	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.75	0.2711	TRUE	519	3926	326	965	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	52	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	93	25	0.38	0.69	0.0516	0.6713	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.69	0.7229	TRUE	267	562	48	632	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DISC1FP1--STX8	7	36	DISC1FP1	1086	chr11:89984485:+	STX8	27675	chr17:9395233:-	INCL_NON_REF_SPLICE	YES	1	173	0.98	0.2	0.0904	0.4648	DISC1FP1->DISC1_fusion_partner_1_(non-protein_coding),chr11:89984400-90648220:+,STX8->chr17:9153788-9479908:-,syntaxin_8	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.98	0.5552	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	10	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3149	0	0	1	0.1291	0.0258	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1549	FALSE	13	9	0	364	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	9	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1162	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1162	TRUE	0	0	0	518	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCL1--C20orf194	7	7	RCL1	1359	chr9:4793227:+	C20orf194	20343	chr20:3363153:-	ONLY_REF_SPLICE	YES	3440	7	0	0.67	0.0904	0.0904	RCL1->RNA_terminal_phosphate_cyclase_like_1,chr9:4792869-4885917:+,C20orf194->chr20:3229951-3388272:-,chromosome_20_open_reading_frame_194	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.67	0.1808	TRUE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GYPC--EEF1A1	7	5	GYPC	7407	chr2:127447866:+	EEF1A1	17719	chr6:74228493:-	INCL_NON_REF_SPLICE	YES	2841	33388	0	0	0.0904	0.0646	GYPC->chr2:127413509-127454246:+,glycophorin_C_(Gerbich_blood_group),EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.155	TRUE	0	0	0	3	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF177--CCDC105	6	8	ZNF177	11889	chr19:9475624:+	CCDC105	25260	chr19:15131273:+	ONLY_REF_SPLICE	YES	41	1	0.25	0.93	0.0775	0.1033	ZNF177->chr19:9434850-9493293:+,chr19:9435021-9493293:+,zinc_finger_protein_177,CCDC105->chr19:15121556-15134081:+,coiled-coil_domain_containing_105	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.93	0.1808	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	6	5	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0775	0.0646	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1421	TRUE	13	49	2	38	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ND4L	7	0	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0904	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0904	FALSE	1	1	0	107	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CGGBP1--PRICKLE2	5	8	CGGBP1	2284	chr3:88190120:-	PRICKLE2	19215	chr3:64148805:-	ONLY_REF_SPLICE	YES	10	0	0.57	1	0.0646	0.1033	CGGBP1->CGG_triplet_repeat_binding_protein_1,chr3:88101094-88199035:-,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.1679	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIF13A--TPMT	5	8	KIF13A	18087	chr6:17825999:-	TPMT	51621	chr6:18149402:-	ONLY_REF_SPLICE	YES	51	0	0.2	1	0.0646	0.1033	{Klijn_CCL:Head-Neck=1,Lymphoid=1},KIF13A->chr6:17759414-17987854:-,kinesin_family_member_13A,TPMT->chr6:18128542-18155305:-,thiopurine_S-methyltransferase	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.1679	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	6	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3164	0	0	1	0.0775	0.0387	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1162	FALSE	13	9	0	364	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	15	MT-ND1	1462	chrM:3768:+	MT-RNR2	5001	chrM:1715:+	INCL_NON_REF_SPLICE	NO	199	0	0.08	1	0.0387	0.1937	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.2324	FALSE	114	26	4	85	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RP11-742N3.1	6	0	EIF1	1092	chr17:39845228:+	RP11-742N3.1	7786	chr11:82400572:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0775	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RP11-742N3.1->chr11:82400571-82400944:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0775	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFX3--GLIS3	5	4	RFX3	23640	chr9:3228847:-	GLIS3	55541	chr9:3937189:-	ONLY_REF_SPLICE	YES	114	15	0.07	0.38	0.0646	0.0516	RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,GLIS3->GLIS_family_zinc_finger_3,chr9:3824127-4348392:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.38	0.1162	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	6	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0775	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0775	FALSE	46	201	11	112	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBC1D22B--ISM1	5	4	TBC1D22B	2259	chr6:37237426:+	ISM1	19195	chr20:13251151:+	ONLY_REF_SPLICE	YES	112	2	0.07	0.82	0.0646	0.0516	TBC1D22B->TBC1_domain_family_member_22B,chr6:37225548-37300746:+,ISM1->chr20:13202418-13281298:+,isthmin_1,_angiogenesis_inhibitor	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.82	0.1162	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	4	7	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	51	0	0.18	1	0.0516	0.0904	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.142	FALSE	114	26	4	85	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	4	7	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0516	0.0904	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.142	TRUE	0	2	0	37	2	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	5	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0646	0.0387	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1033	FALSE	515	4851	409	746	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-TL1	3	10	MT-ND1	1342	chrM:3648:+	MT-TL1	5013	chrM:3286:+	INCL_NON_REF_SPLICE	YES	7	0	0.65	1	0.0387	0.1291	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	0.1678	FALSE	210	95	5	49	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FTH1--ACTG1	5	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	64	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	FALSE	231	204	14	283	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	FALSE	231	205	14	283	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C11orf31--TMX2	3	4	C11orf31	2632	chr11:57510456:+	TMX2	7371	chr11:57505080:+	INCL_NON_REF_SPLICE	YES	14	587	0.33	0.01	0.0387	0.0516	LOCAL_REARRANGEMENT:+:[380],C11orf31->chr11:57508825-57510986:+,chromosome_11_open_reading_frame_31,TMX2->chr11:57480072-57508445:+,thioredoxin_related_transmembrane_protein_2	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.33	0.0903	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--HMGA1	4	0	C17orf76-AS1	1593	chr17:16342728:+	HMGA1	15815	chr6:34208514:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0516	0	C17orf76-AS1->chr17:16342136-16381992:+,HMGA1->Oncogene{Bushman},chr6:34204650-34214008:+,high_mobility_group_AT-hook_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2251F13.1--PRKD1	4	0	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0516	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0516	TRUE	0	3	0	8	3	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RP11-742N3.1	4	0	EIF1	1098	chr17:39845234:+	RP11-742N3.1	7795	chr11:82400581:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RP11-742N3.1->chr11:82400571-82400944:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0516	FALSE	183	104	9	328	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0516	FALSE	462	80	0	856	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	4	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0516	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0516	FALSE	272	151	14	158	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	2	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	13810	1	0	0.83	0.0387	0.0258	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.83	0.0645	FALSE	231	217	16	283	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC3A2--TMEM179B	2	6	SLC3A2	2429	chr11:62638309:+	TMEM179B	17629	chr11:62556495:+	ONLY_REF_SPLICE	YES	263	169	0.03	0.05	0.0258	0.0775	LOCAL_REARRANGEMENT:+:[65641],SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2,TMEM179B->chr11:62554887-62557877:+,transmembrane_protein_179B	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.05	0.1033	TRUE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C11orf30--SUV420H1	2	5	C11orf30	13539	chr11:76207513:+	SUV420H1	46483	chr11:67939176:-	ONLY_REF_SPLICE	YES	54	233	0.11	0.03	0.0258	0.0646	{Klijn_CCL:Lymphoid=1},C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+,SUV420H1->chr11:67922330-67981295:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.11	0.0904	TRUE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FTH1--ACTG1	3	1	FTH1	1258	chr11:61734875:-	ACTG1	11019	chr17:79479357:-	INCL_NON_REF_SPLICE	YES	7371	140	0	0.03	0.0387	0.0129	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0516	FALSE	0	0	0	64	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	9	RP11-120D5.1	2349	chrX:11125021:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	18	0	0.36	1	0.0129	0.1162	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.1291	FALSE	0	5	0	14	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	9	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	12	0	0.45	1	0.0129	0.1162	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	1	0.1291	FALSE	16	356	14	466	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C11orf30--SUV420H1	2	4	C11orf30	13539	chr11:76207513:+	SUV420H1	46941	chr11:67938718:-	ONLY_REF_SPLICE	YES	54	252	0.1	0.02	0.0258	0.0516	{Klijn_CCL:Lymphoid=1},C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+,SUV420H1->chr11:67922330-67981295:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.1	0.0774	TRUE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RP11-742N3.1	3	0	EIF1	1121	chr17:39845257:+	RP11-742N3.1	7825	chr11:82400611:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RP11-742N3.1->chr11:82400571-82400944:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	FALSE	183	104	9	328	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	FALSE	183	104	9	328	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	FALSE	462	80	0	856	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB2--ARHGAP15	3	0	ZEB2	5479	chr2:145274845:-	ARHGAP15	55274	chr2:144244942:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0387	0	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.08%,GTEx_FI:{Blood=[count:17=pct:9.8],Whole_Blood=[count:16=pct:12.1],Nerve=[count:6=pct:3.5],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=23,Nerve_-_Tibial=9,Spleen=4,Lung=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	TRUE	3	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0258	0.0387	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0645	FALSE	407	2205	196	549	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARIH2--DAG1	2	2	ARIH2	1178	chr3:48956431:+	DAG1	38058	chr3:49547852:+	ONLY_REF_SPLICE	YES	212	36	0.02	0.1	0.0258	0.0258	ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.1	0.0516	TRUE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC3A2--TMEM179B	1	6	SLC3A2	1336	chr11:62623853:+	TMEM179B	17629	chr11:62556495:+	ONLY_REF_SPLICE	YES	260	169	0.03	0.04	0.0129	0.0775	LOCAL_REARRANGEMENT:+:[65641],SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2,TMEM179B->chr11:62554887-62557877:+,transmembrane_protein_179B	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.0904	TRUE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARL15--NDUFS4	2	1	ARL15	5950	chr5:53409032:-	NDUFS4	18000	chr5:52942063:+	ONLY_REF_SPLICE	YES	111	729	0.03	0	0.0258	0.0129	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0387	FALSE	5	61	2	9	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARL15--NDUFS4	2	1	ARL15	1151	chr5:53606262:-	NDUFS4	15711	chr5:52899282:+	ONLY_REF_SPLICE	YES	48	458	0.06	0.01	0.0258	0.0129	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.0387	FALSE	0	1	0	3	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C11orf30--SUV420H1	1	5	C11orf30	13539	chr11:76207513:+	SUV420H1	46896	chr11:67938763:-	ONLY_REF_SPLICE	YES	54	257	0.1	0.02	0.0129	0.0646	{Klijn_CCL:Lymphoid=1},C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+,SUV420H1->chr11:67922330-67981295:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.1	0.0775	TRUE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--PGBD2	2	1	CHD2	6529	chr15:93444529:+	PGBD2	63542	chr1:249211478:+	ONLY_REF_SPLICE	YES	113	63	0.03	0.05	0.0258	0.0129	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.05	0.0387	TRUE	0	1	0	2	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-321K16.1--SLC25A48	2	1	CTC-321K16.1	4781	chr5:134965066:+	SLC25A48	10390	chr5:135178105:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0.0129	CTC-321K16.1->chr5:134895267-134970564:+,SLC25A48->chr5:135170338-135224326:+,solute_carrier_family_25_member_48	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	TRUE	0	3	0	3	3	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLCG2--CMIP	1	5	PLCG2	4990	chr16:81819787:+	CMIP	70851	chr16:81730165:+	ONLY_REF_SPLICE	YES	12	86	0.33	0.07	0.0129	0.0646	LOCAL_REARRANGEMENT:+:[27335],PLCG2->ArcherDX_panel,FoundationOne_panel,chr16:81772702-81991899:+,phospholipase_C_gamma_2,CMIP->c-Maf_inducing_protein,chr16:81478775-81745367:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.33	0.0775	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--HAT1	2	1	PROSC	2996	chr8:37623873:+	HAT1	15485	chr2:172782047:+	ONLY_REF_SPLICE	YES	195	58	0.02	0.05	0.0258	0.0129	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.0387	TRUE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB2A--CA8	2	1	RAB2A	9582	chr8:61504528:+	CA8	29466	chr8:61102544:-	ONLY_REF_SPLICE	YES	518	1033	0.01	0	0.0258	0.0129	RAB2A->RAB2A,_member_RAS_oncogene_family,chr8:61429416-61536186:+,CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0387	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ALKBH1--ATL2	2	0	ALKBH1	7006	chr14:78141999:-	ATL2	18288	chr2:38570654:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	ALKBH1->alkB_homolog_1,_histone_H2A_dioxygenase,chr14:78138747-78174363:-,ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKIB1--LARP1B	2	0	ANKIB1	16025	chr7:92000921:+	LARP1B	42525	chr4:129042981:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+,LARP1B->La_ribonucleoprotein_domain_family_member_1B,chr4:128982423-129144086:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001171.1--LMBR1	2	0	AP001171.1	1269	chr21:21630865:-	LMBR1	34689	chr7:156472000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	AP001171.1->chr21:21629065-21631133:-,LMBR1->chr7:156461646-156685924:-,limb_development_membrane_protein_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C11orf73--PICALM	2	0	C11orf73	3558	chr11:86017524:+	PICALM	14527	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1},C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	1	2	0	10	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBX5--NEDD4	2	0	CBX5	1095	chr12:54673792:-	NEDD4	25836	chr15:56258744:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CBX5->chr12:54624724-54673886:-,chromobox_5,NEDD4->chr15:56119120-56285944:-,neural_precursor_cell_expressed,_developmentally_down-regulated_4,_E3_ubiquitin_protein_ligase	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK14--ZNHIT1	2	0	CDK14	18269	chr7:90528668:+	ZNHIT1	40651	chr7:100866758:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14,ZNHIT1->chr7:100860949-100867471:+,zinc_finger_HIT-type_containing_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CFH--WDR70	2	0	CFH	9262	chr1:196654367:+	WDR70	33212	chr5:37396477:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CFH->chr1:196621008-196716634:+,complement_factor_H,WDR70->WD_repeat_domain_70,chr5:37379314-37753537:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1069	chr14:30766181:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	1	0	7	1	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DUS2--COG8	2	0	DUS2	22572	chr16:68112421:+	COG8	34405	chr16:69363082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	DUS2->chr16:68021649-68113223:+,dihydrouridine_synthase_2,COG8->chr16:69354043-69373570:-,component_of_oligomeric_golgi_complex_8	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ICAM5--MXI1	2	0	ICAM5	6632	chr19:10406288:+	MXI1	15476	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	ICAM5->Oncogene{Bushman},chr19:10400657-10407454:+,intercellular_adhesion_molecule_5,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INIP--PTBP3	2	0	INIP	2331	chr9:115478741:-	PTBP3	16342	chr9:115060196:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-,PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KSR1--DISC1FP1	2	0	KSR1	4646	chr17:25877734:+	DISC1FP1	42215	chr11:90279922:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	KSR1->Oncogene{Bushman},chr17:25783670-25953461:+,kinase_suppressor_of_ras_1,DISC1FP1->DISC1_fusion_partner_1_(non-protein_coding),chr11:89984400-90648220:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	METAP1D--MTX2	2	0	METAP1D	1427	chr2:172864916:+	MTX2	20252	chr2:177161588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	METAP1D->chr2:172864490-172947158:+,methionyl_aminopeptidase_type_1D_(mitochondrial),MTX2->chr2:177134123-177202753:+,metaxin_2	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POU2F1--TM2D1	2	0	POU2F1	1130	chr1:167190195:+	TM2D1	45688	chr1:62175109:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,TM2D1->TM2_domain_containing_1,chr1:62146718-62191095:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCL1--C9orf3	2	0	RCL1	11821	chr9:4849550:+	C9orf3	55984	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx_FI:{Liver=[count:3=pct:2.5],Pancreas=[count:2=pct:1.1],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=2;pct=0.02%;dist=Liver=2},RCL1->RNA_terminal_phosphate_cyclase_like_1,chr9:4792869-4885917:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	6	1	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	2	0	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	16	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-864K19.4--RPS6KC1	2	0	RP5-864K19.4	1240	chr1:39325911:+	RPS6KC1	23556	chr1:213415912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	RP5-864K19.4->chr1:39325672-39385068:+,RPS6KC1->chr1:213224589-213448116:+,ribosomal_protein_S6_kinase_C1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SREK1--RPS6KC1	2	0	SREK1	4141	chr5:65449424:+	RPS6KC1	44671	chr1:213415912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	SREK1->chr5:65435799-65479443:+,splicing_regulatory_glutamic_acid/lysine-rich_protein_1,RPS6KC1->chr1:213224589-213448116:+,ribosomal_protein_S6_kinase_C1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ST6GALNAC1--ZNF451	2	0	ST6GALNAC1	9380	chr17:74621901:-	ZNF451	30175	chr6:56989532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	ST6GALNAC1->Oncogene{Bushman},ST6_N-acetylgalactosaminide_alpha-2,6-sialyltransferase_1,chr17:74620843-74639920:-,ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBC1D22B--JARID2	2	0	TBC1D22B	2259	chr6:37237426:+	JARID2	25001	chr6:15468773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	TBC1D22B->TBC1_domain_family_member_22B,chr6:37225548-37300746:+,JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIP12--RSF1	2	0	TRIP12	2222	chr2:230786596:-	RSF1	52996	chr11:77524747:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12,RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR27--PSMB1	2	0	WDR27	1513	chr6:170101647:-	PSMB1	40763	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx_FI:{Spleen=[count:1=pct:0.9],Colon=[count:1=pct:0.5],Brain=[count:1=pct:0.2]},GTEx_v2:{count=7;pct=0.08%;dist=Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Thyroid=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Colon_-_Transverse=1},WDR27->WD_repeat_domain_27,chr6:169857307-170102159:-,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	4	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAGI2--PLVAP	1	3	MAGI2	1555	chr7:79082336:-	PLVAP	44959	chr19:17471641:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0129	0.0387	MAGI2->ArcherDX_panel,FoundationOne_panel,chr7:77646393-79082890:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_2,PLVAP->chr19:17462257-17488159:-,plasmalemma_vesicle_associated_protein	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFX3--GLIS3	1	3	RFX3	21602	chr9:3248032:-	GLIS3	55541	chr9:3937189:-	ONLY_REF_SPLICE	YES	121	15	0.03	0.21	0.0129	0.0387	RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,GLIS3->GLIS_family_zinc_finger_3,chr9:3824127-4348392:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.21	0.0516	TRUE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--PTTG1	1	2	CHD2	6529	chr15:93444529:+	PTTG1	60330	chr5:159849309:+	ONLY_REF_SPLICE	YES	113	160	0.03	0.02	0.0129	0.0258	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,PTTG1->Oncogene{Bushman},chr5:159848829-159855748:+,pituitary_tumor-transforming_1	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0387	TRUE	0	0	0	2	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC3A2--TMEM179B	1	2	SLC3A2	1336	chr11:62623853:+	TMEM179B	17898	chr11:62556764:+	ONLY_REF_SPLICE	YES	260	204	0.01	0.01	0.0129	0.0258	LOCAL_REARRANGEMENT:+:[65641],SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2,TMEM179B->chr11:62554887-62557877:+,transmembrane_protein_179B	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0387	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC091969.1--CTD-2410N18.5	1	1	AC091969.1	12214	chr5:152064221:-	CTD-2410N18.5	20467	chr5:133509713:-	ONLY_REF_SPLICE	NO	204	0	0.01	1	0.0129	0.0129	AC091969.1->chr5:151998525-152603103:-,CTD-2410N18.5->chr5:133502861-133561762:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADORA2B--UBB	1	1	ADORA2B	1667	chr17:15848897:+	UBB	8656	chr17:16285216:+	ONLY_REF_SPLICE	YES	148	236	0.01	0.01	0.0129	0.0129	ADORA2B->adenosine_A2b_receptor,chr17:15848231-15879060:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0258	FALSE	0	1	0	5	1	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANK1--CCDC144NL	1	1	ANK1	34232	chr8:41545674:-	CCDC144NL	59294	chr17:20740424:-	ONLY_REF_SPLICE	YES	521	1	0	0.67	0.0129	0.0129	ANK1->ankyrin_1,chr8:41510739-41754280:-,CCDC144NL->chr17:20739760-20799453:-,coiled-coil_domain_containing_144_family,_N-terminal_like	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.67	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKIB1--KRIT1	1	1	ANKIB1	2991	chr7:91924480:+	KRIT1	34137	chr7:91871451:-	ONLY_REF_SPLICE	NO	612	873	0	0	0.0129	0.0129	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},HGNC_GENEFAM,LOCAL_INVERSION:+:-:[68],ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+,KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATF6--UBB	1	1	ATF6	9840	chr1:161790951:+	UBB	28581	chr17:16285216:+	ONLY_REF_SPLICE	YES	436	236	0	0.01	0.0129	0.0129	ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP6V1E1--BCL2L13	1	1	ATP6V1E1	4220	chr22:18095578:-	BCL2L13	18334	chr22:18165980:+	ONLY_REF_SPLICE	YES	1134	222	0	0.01	0.0129	0.0129	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[37],ATP6V1E1->ATPase_H+_transporting_V1_subunit_E1,chr22:18074902-18111584:-,BCL2L13->BCL2_like_13,chr22:18111621-18213388:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BIRC6--YIPF4	1	1	BIRC6	70004	chr2:32774548:+	YIPF4	87410	chr2:32515552:+	ONLY_REF_SPLICE	NO	108	314	0.02	0.01	0.0129	0.0129	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[40433],BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,YIPF4->Yip1_domain_family_member_4,chr2:32502979-32541663:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0258	FALSE	1	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C11orf31--TMX2	1	1	C11orf31	1895	chr11:57509719:+	TMX2	7371	chr11:57505080:+	ONLY_REF_SPLICE	YES	665	587	0	0	0.0129	0.0129	LOCAL_REARRANGEMENT:+:[380],C11orf31->chr11:57508825-57510986:+,chromosome_11_open_reading_frame_31,TMX2->chr11:57480072-57508445:+,thioredoxin_related_transmembrane_protein_2	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C9orf64--RPS24	1	1	C9orf64	2606	chr9:86570296:-	RPS24	11989	chr10:79795110:+	ONLY_REF_SPLICE	YES	169	44	0.01	0.04	0.0129	0.0129	C9orf64->chr9:86553226-86571901:-,chromosome_9_open_reading_frame_64,RPS24->chr10:79793518-79816570:+,ribosomal_protein_S24	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK11A--ITGB3BP	1	1	CDK11A	6155	chr1:1647785:-	ITGB3BP	28880	chr1:63920639:-	ONLY_REF_SPLICE	YES	274	243	0.01	0.01	0.0129	0.0129	CDK11A->Oncogene{Bushman},chr1:1634169-1655766:-,cyclin-dependent_kinase_11A,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPED1--ING3	1	1	CPED1	13870	chr7:120740148:+	ING3	42835	chr7:120604796:+	ONLY_REF_SPLICE	NO	136	77	0.01	0.03	0.0129	0.0129	LOCAL_REARRANGEMENT:+:[11461],CPED1->cadherin_like_and_PC-esterase_domain_containing_1,chr7:120628731-120937498:+,ING3->Oncogene{Bushman},chr7:120590803-120617270:+,inhibitor_of_growth_family_member_3	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTDSPL2--B2M	1	1	CTDSPL2	1539	chr15:44719970:+	B2M	29463	chr15:45007621:+	ONLY_REF_SPLICE	YES	123	362	0.02	0.01	0.0129	0.0129	CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0258	FALSE	0	0	0	4	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--PHF14	1	1	DANCR	1530	chr4:53579126:+	PHF14	31809	chr7:11150977:+	ONLY_REF_SPLICE	YES	840	78	0	0.03	0.0129	0.0129	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0258	FALSE	0	5	0	5	1	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JAK2--KDM4C	1	1	JAK2	1990	chr9:4986022:+	KDM4C	47787	chr9:6980925:+	ONLY_REF_SPLICE	NO	720	373	0	0.01	0.0129	0.0129	JAK2->ArcherDX_panel,FoundationOne_panel,Janus_kinase_2,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:4985033-5128183:+,KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JAK2--KIAA1432	1	1	JAK2	24593	chr9:5123121:+	KIAA1432	40339	chr9:5742869:+	ONLY_REF_SPLICE	YES	1903	524	0	0	0.0129	0.0129	JAK2->ArcherDX_panel,FoundationOne_panel,Janus_kinase_2,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:4985033-5128183:+,KIAA1432->chr9:5629025-5776557:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JAK2--KIAA1432	1	1	JAK2	1990	chr9:4986022:+	KIAA1432	33350	chr9:5689959:+	ONLY_REF_SPLICE	YES	720	296	0	0.01	0.0129	0.0129	JAK2->ArcherDX_panel,FoundationOne_panel,Janus_kinase_2,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:4985033-5128183:+,KIAA1432->chr9:5629025-5776557:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1432--JAK2	1	1	KIAA1432	3617	chr9:5690038:+	JAK2	35666	chr9:5021963:+	ONLY_REF_SPLICE	YES	288	781	0.01	0	0.0129	0.0129	GTEx_v2:{count=3;pct=0.03%;dist=Esophagus_-_Mucosa=1,Whole_Blood=1,Colon_-_Transverse=1},KIAA1432->chr9:5629025-5776557:+,JAK2->ArcherDX_panel,FoundationOne_panel,Janus_kinase_2,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:4985033-5128183:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIF13A--TPMT	1	1	KIF13A	16730	chr6:17828471:-	TPMT	51621	chr6:18149402:-	ONLY_REF_SPLICE	YES	72	0	0.03	1	0.0129	0.0129	{Klijn_CCL:Head-Neck=1,Lymphoid=1},KIF13A->chr6:17759414-17987854:-,kinesin_family_member_13A,TPMT->chr6:18128542-18155305:-,thiopurine_S-methyltransferase	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0258	TRUE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NADK--GNB1	1	1	NADK	2712	chr1:1710185:-	GNB1	20514	chr1:1770677:-	ONLY_REF_SPLICE	YES	21	12	0.09	0.14	0.0129	0.0129	GTEx_FI:{Blood=[count:6=pct:3.4],Whole_Blood=[count:2=pct:1.5]},GTEx_v2:{count=3;pct=0.03%;dist=Whole_Blood=3},YOSHIHARA_TCGA_num_samples[HNSC:1|LGG:1],LOCAL_REARRANGEMENT:-:[4833],NADK->NAD_kinase,chr1:1682671-1711896:-,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.14	0.0258	TRUE	0	1	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCMTD1--PXDNL	1	1	PCMTD1	11735	chr8:52744004:-	PXDNL	21573	chr8:52567320:-	ONLY_REF_SPLICE	YES	100	0	0.02	1	0.0129	0.0129	NEIGHBORS[8135],PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,PXDNL->chr8:52232138-52722005:-,peroxidasin_like	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0258	FALSE	1	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCMTD1--PXDNL	1	1	PCMTD1	11735	chr8:52744004:-	PXDNL	22645	chr8:52505258:-	ONLY_REF_SPLICE	NO	100	0	0.02	1	0.0129	0.0129	NEIGHBORS[8135],PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,PXDNL->chr8:52232138-52722005:-,peroxidasin_like	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0258	FALSE	0	1	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--C11orf73	1	1	PICALM	23636	chr11:85685751:-	C11orf73	32437	chr11:86017287:+	ONLY_REF_SPLICE	YES	3382	1287	0	0	0.0129	0.0129	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Heart_-_Atrial_Appendage=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP4R1--PPP1CC	1	1	PPP4R1	6029	chr18:9595016:-	PPP1CC	33302	chr12:111169706:-	ONLY_REF_SPLICE	YES	76	503	0.03	0	0.0129	0.0129	PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,PPP1CC->Oncogene{Bushman},chr12:111157485-111180744:-,protein_phosphatase_1_catalytic_subunit_gamma	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB2A--CA8	1	1	RAB2A	1397	chr8:61429812:+	CA8	23296	chr8:61144938:-	ONLY_REF_SPLICE	YES	606	2542	0	0	0.0129	0.0129	RAB2A->RAB2A,_member_RAS_oncogene_family,chr8:61429416-61536186:+,CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM41--NUP62CL	1	1	RBM41	5434	chrX:106356627:-	NUP62CL	23924	chrX:106391039:-	ONLY_REF_SPLICE	YES	55	56	0.04	0.03	0.0129	0.0129	LOCAL_REARRANGEMENT:-:[4600],RBM41->RNA_binding_motif_protein_41,chrX:106307650-106362057:-,NUP62CL->chrX:106366657-106449670:-,nucleoporin_62kDa_C-terminal_like	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.0258	TRUE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--CLCN4	1	1	RP11-120D5.1	4510	chrX:11074056:-	CLCN4	28795	chrX:10201534:+	ONLY_REF_SPLICE	YES	12	108	0.14	0.02	0.0129	0.0129	RP11-120D5.1->chrX:10865996-11129261:-,CLCN4->chloride_voltage-gated_channel_4,chrX:10125024-10205700:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.14	0.0258	TRUE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL27--AARSD1	1	1	RPL27	1559	chr17:41150848:+	AARSD1	15915	chr17:41103911:-	ONLY_REF_SPLICE	YES	457	168	0	0.01	0.0129	0.0129	LOCAL_INVERSION:+:-:[33775],RPL27->chr17:41150290-41154976:+,ribosomal_protein_L27,AARSD1->alanyl-tRNA_synthetase_domain_containing_1,chr17:41102543-41116515:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL32P3--IFT122	1	1	RPL32P3	4754	chr3:129112478:-	IFT122	38380	chr3:129221554:+	ONLY_REF_SPLICE	YES	40	120	0.05	0.02	0.0129	0.0129	GTEx_FI:{Brain=[count:2=pct:0.3],Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},LOCAL_INVERSION:-:+:[40470],RPL32P3->chr3:129101765-129118498:-,ribosomal_protein_L32_pseudogene_3,IFT122->chr3:129158968-129239198:+,intraflagellar_transport_122	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.0258	TRUE	0	0	0	4	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPUSD3--OGG1	1	1	RPUSD3	3620	chr3:9883667:-	OGG1	11756	chr3:9792629:+	ONLY_REF_SPLICE	YES	410	331	0	0.01	0.0129	0.0129	LOCAL_INVERSION:-:+:[49630],RPUSD3->RNA_pseudouridylate_synthase_domain_containing_3,chr3:9879533-9886286:-,OGG1->8-oxoguanine_DNA_glycosylase,chr3:9791628-9829903:+	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0258	FALSE	0	1	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMG6--ADAM2	1	1	SMG6	7606	chr17:2195846:-	ADAM2	53261	chr8:39627094:-	ONLY_REF_SPLICE	YES	33	0	0.06	1	0.0129	0.0129	SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-,ADAM2->ADAM_metallopeptidase_domain_2,chr8:39601254-39695808:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF177--CCDC105	1	1	ZNF177	7388	chr19:9451860:+	CCDC105	25260	chr19:15131273:+	ONLY_REF_SPLICE	NO	11	1	0.15	0.67	0.0129	0.0129	ZNF177->chr19:9434850-9493293:+,chr19:9435021-9493293:+,zinc_finger_protein_177,CCDC105->chr19:15121556-15134081:+,coiled-coil_domain_containing_105	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.67	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF177--CCDC105	1	1	ZNF177	1607	chr19:9435456:+	CCDC105	25260	chr19:15131273:+	ONLY_REF_SPLICE	NO	63	1	0.03	0.67	0.0129	0.0129	ZNF177->chr19:9434850-9493293:+,chr19:9435021-9493293:+,zinc_finger_protein_177,CCDC105->chr19:15121556-15134081:+,coiled-coil_domain_containing_105	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.67	0.0258	TRUE	0	0	0	1	0	FALSE	ACH-000751
OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF37A--BET1	1	1	ZNF37A	3297	chr10:38385560:+	BET1	19002	chr7:93628606:-	ONLY_REF_SPLICE	YES	28	557	0.07	0	0.0129	0.0129	ZNF37A->chr10:38383264-38414472:+,zinc_finger_protein_37A,BET1->Bet1_golgi_vesicular_membrane_trafficking_protein,chr7:93592074-93633694:-	OCIM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000751
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	178	54	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	24	34	0.91	0.87	1.5215	0.4616	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	0.91	1.9831	TRUE	181	1564	124	196	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	148	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.265	0.2393	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.5043	TRUE	508	994	45	981	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	76	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6496	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6496	TRUE	519	3926	326	965	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	72	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6154	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6154	TRUE	0	0	0	518	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	53	15	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	7	1	0.91	0.453	0.1282	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.5812	FALSE	416	2512	207	587	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	155	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	9	0	0.95	1	0.0342	1.3249	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	1.3591	FALSE	344	826	44	306	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	150	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	12	1	0.93	0.99	0.0427	1.2821	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.99	1.3248	FALSE	344	826	44	306	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	156	MT-ND4	1250	chrM:11009:+	MT-ND4L	5458	chrM:10549:+	INCL_NON_REF_SPLICE	YES	6	0	0.96	1	0.0256	1.3334	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	1.359	FALSE	344	827	44	306	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	103	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	1	0.97	0.99	0.0427	0.8804	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	0.99	0.9231	FALSE	344	821	44	306	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	101	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	7	1	0.94	0.99	0.0256	0.8633	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	0.99	0.8889	FALSE	344	826	44	306	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	18	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1539	0.0513	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2052	FALSE	499	1288	110	792	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	38	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	9	1	0.83	0.98	0.0427	0.3248	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.98	0.3675	FALSE	344	826	44	306	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	46	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0256	0.3932	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.4188	FALSE	344	821	44	306	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1111	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1111	TRUE	0	0	0	434	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.094	0.0598	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1538	FALSE	499	1288	110	792	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	11	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.094	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.094	TRUE	22	156	2	142	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	10	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0855	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0855	TRUE	0	0	0	81	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	24	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9	1	0.76	0.97	0.0342	0.2051	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.97	0.2393	FALSE	344	826	44	306	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	17	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	9	1	0.7	0.95	0.0342	0.1453	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.95	0.1795	FALSE	344	826	44	306	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	7	1	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	152	0	0.05	1	0.0598	0.0085	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0683	TRUE	0	0	0	81	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	9	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.0769	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1111	FALSE	499	1288	110	792	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMP7--RBM38	6	0	BMP7	1925	chr20:55840761:-	RBM38	24461	chr20:55982599:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0513	0	BMP7->bone_morphogenetic_protein_7,chr20:55743804-55841685:-,RBM38->RNA_binding_motif_protein_38,chr20:55966463-55984389:+	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	5	2	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0427	0.0171	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0598	TRUE	0	1	0	84	1	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	5	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0427	0.0171	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0598	TRUE	0	1	0	84	1	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	2	14	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	24	30	0.4	0.35	0.0171	0.1197	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.4	0.1368	TRUE	20	16	0	28	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	6	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.0513	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0855	FALSE	499	1288	110	792	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	4	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	14	1	0.42	0.0342	0.0513	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.0855	FALSE	93	270	15	244	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	5	1	NOC4L	5448	chr12:132633440:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	48	13	0.11	0.32	0.0427	0.0085	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.32	0.0512	TRUE	4	9	0	12	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	5	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0427	TRUE	0	5	1	24	1	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0427	TRUE	0	0	0	518	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DPH6-AS1--RP11-684B21.1	4	2	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.0342	0.0171	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	1	0.0513	TRUE	17	119	17	33	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0342	TRUE	0	0	0	81	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNB2L1--MT-ND4	4	0	GNB2L1	8038	chr5:180666145:-	MT-ND4	13643	chrM:11128:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0342	FALSE	0	0	0	1	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	11	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	NO	59	34	0.17	0.26	0.0085	0.094	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.26	0.1025	TRUE	105	90	7	93	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRDM2--MT-ND4L	3	2	PRDM2	17152	chr1:14107322:+	MT-ND4L	28802	chrM:10485:+	INCL_NON_REF_SPLICE	YES	107	0	0.04	1	0.0256	0.0171	PRDM2->Oncogene{Bushman},PR_domain_2,chr1:14026693-14151574:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0427	FALSE	0	0	0	4	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0.0171	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0427	FALSE	515	4851	409	746	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	1	EIF1	1121	chr17:39845257:+	RPS28	8168	chr19:8386425:+	INCL_NON_REF_SPLICE	YES	559	0	0.01	1	0.0256	0.0085	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0341	FALSE	0	0	0	81	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0256	FALSE	344	821	44	306	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--SERINC2	3	0	PPP1R12C	8950	chr19:55610152:-	SERINC2	30252	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0256	TRUE	0	4	0	1	0	TRUE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	2	1	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	NO	60	42	0.05	0.07	0.0171	0.0085	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.07	0.0256	TRUE	4	3	0	21	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRD1--CTTN	2	0	BRD1	12025	chr22:50187682:-	CTTN	23266	chr11:70251371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	BRD1->bromodomain_containing_1,chr22:50166931-50221160:-,CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	2	0	FBRSL1	10358	chr12:133104574:+	NOC4L	33548	chr12:132635803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0171	TRUE	1	3	0	2	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKBKB--INO80C	2	0	IKBKB	1904	chr8:42129723:+	INO80C	32729	chr18:33060527:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	IKBKB->chr8:42128820-42189973:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_beta,INO80C->INO80_complex_subunit_C,chr18:33032194-33077955:-	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM6--RHOA	2	0	RBM6	29776	chr3:50131308:+	RHOA	39376	chr3:49405981:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Lung=1,Pituitary=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-319G9.5--WWOX	2	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0171	FALSE	154	425	28	76	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--CTBP1	2	0	UVSSA	7499	chr4:1349033:+	CTBP1	24040	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0171	TRUE	23	5	0	14	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--CTBP1	2	0	UVSSA	7499	chr4:1349033:+	CTBP1	32260	chr4:1222131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0171	TRUE	3	2	0	5	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ2A--SMARCC2	1	1	BAZ2A	15913	chr12:56997143:-	SMARCC2	30089	chr12:56578895:-	ONLY_REF_SPLICE	YES	127	120	0.02	0.02	0.0085	0.0085	BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,SMARCC2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_2,chr12:56556767-56583351:-	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.017	TRUE	0	0	0	1	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	1	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33548	chr12:132635803:+	ONLY_REF_SPLICE	NO	57	43	0.03	0.04	0.0085	0.0085	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.017	TRUE	3	48	0	26	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	1	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	57	48	0.03	0.04	0.0085	0.0085	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.017	TRUE	3	48	0	26	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LDLRAD4--ADRBK1	1	1	LDLRAD4	8599	chr18:13465110:+	ADRBK1	43365	chr11:67049906:+	ONLY_REF_SPLICE	YES	5	467	0.29	0	0.0085	0.0085	LDLRAD4->chr18:13217497-13652754:+,low_density_lipoprotein_receptor_class_A_domain_containing_4,ADRBK1->adrenergic,_beta,_receptor_kinase_1,chr11:67033881-67054027:+	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.29	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--FAM49B	1	1	PVT1	1202	chr8:128806980:+	FAM49B	35222	chr8:130916831:-	ONLY_REF_SPLICE	NO	35	254	0.05	0.01	0.0085	0.0085	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCARB1--UBC	1	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	96	34	0.02	0.06	0.0085	0.0085	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.06	0.017	TRUE	55	66	6	101	0	FALSE	ACH-000056
DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XRCC3--HNRNPH3	1	1	XRCC3	4808	chr14:104177803:-	HNRNPH3	24528	chr10:70098897:+	ONLY_REF_SPLICE	YES	115	446	0.02	0	0.0085	0.0085	XRCC3->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_3,chr14:104163946-104181841:-,HNRNPH3->chr10:70090931-70102948:+,heterogeneous_nuclear_ribonucleoprotein_H3	DOHH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000056
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	91	43	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	0.9495	0.4487	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.3982	TRUE	508	994	45	981	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	62	54	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	50	173	0.7	0.4	0.6469	0.5634	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.7	1.2103	TRUE	181	1564	124	196	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	53	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	478	8	0.11	0.88	0.553	0.073	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.88	0.626	TRUE	519	3926	326	965	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	50	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5217	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5217	TRUE	0	0	0	518	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	44	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4591	0.0417	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5008	FALSE	462	80	0	856	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	28	37	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	239	71	0.21	0.48	0.2922	0.3861	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.48	0.6783	TRUE	267	562	48	632	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	90	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	31	2	0.75	0.98	0.0313	0.9391	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.98	0.9704	FALSE	344	826	44	306	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	14	45	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	243	71	0.2	0.45	0.1461	0.4695	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.45	0.6156	TRUE	267	562	48	632	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	70	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	9271	1	0.01	0.99	0.073	0.7304	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.99	0.8034	FALSE	344	827	44	306	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	76	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	18	2	0.81	0.98	0.0313	0.793	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.98	0.8243	FALSE	344	826	44	306	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	59	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	14	2	0.82	0.97	0.073	0.6156	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.97	0.6886	FALSE	344	821	44	306	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	18	3	IGH@	97640	chr14:106321054:-	TMSB4X	131816	chrX:12993241:+	INCL_NON_REF_SPLICE	YES	11306	0	0	1	0.1878	0.0313	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2191	TRUE	0	0	0	6	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	17	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1774	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1774	TRUE	46	1352	75	139	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	15	3	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	NO	124	382	0.13	0.04	0.1565	0.0313	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.13	0.1878	FALSE	92	22	4	61	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	37	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	239	71	0.15	0.37	0.0417	0.3861	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.37	0.4278	TRUE	267	562	48	632	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	27	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	13058	1	0	0.97	0.0626	0.2817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.97	0.3443	FALSE	328	800	43	304	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	12	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	14250	9	0	0.59	0.1252	0.0104	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.59	0.1356	FALSE	230	193	14	283	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	12	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	19	1	0.41	0.1252	0.0104	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	1	0.1356	TRUE	458	1351	185	561	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	11	3	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1148	0.0313	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1461	FALSE	46	201	11	112	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	11	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	13245	31826	0	0	0.1148	0.0104	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1252	FALSE	183	104	9	328	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	11	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14371	12	0	0.5	0.1148	0.0104	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.5	0.1252	FALSE	230	198	14	283	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	9	4	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0939	0.0417	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1356	TRUE	13	49	2	38	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	27	MT-ND4	1039	chrM:10798:+	MT-ND4L	5496	chrM:10587:+	INCL_NON_REF_SPLICE	NO	7	1	0.81	0.97	0.0313	0.2817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.97	0.313	FALSE	344	821	44	306	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	7	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.89	0.94	0.073	0.1043	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.94	0.1773	FALSE	515	4851	409	746	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--B2M	8	6	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	9248	0	0	1	0.0835	0.0626	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1461	TRUE	0	0	0	28	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	7	8	MT-ND5	2761	chrM:14097:+	MT-ND6	6169	chrM:14317:-	INCL_NON_REF_SPLICE	YES	1	5209	0.94	0	0.073	0.0835	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.94	0.1565	FALSE	26	124	4	93	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	8	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	59	1	0.16	0.92	0.0835	0.0313	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.92	0.1148	FALSE	59	21	0	114	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	8	3	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	59	1	0.16	0.92	0.0835	0.0313	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.92	0.1148	FALSE	59	21	0	114	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	8	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4398	0	0	1	0.0835	0.0209	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1044	FALSE	13	9	0	364	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	22	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	79	1	0.24	0.96	0.0313	0.2296	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.96	0.2609	FALSE	344	826	44	306	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	8	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	13458	32740	0	0	0.0835	0.0104	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0939	FALSE	183	104	9	328	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	5	13	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	2	1	0.9	0.0522	0.1356	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.1878	FALSE	26	124	4	93	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	5	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.9	1	0.0522	0.1356	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.1878	FALSE	407	2205	196	549	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	8	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0835	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0835	FALSE	183	104	9	328	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0.0417	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1147	FALSE	462	80	0	856	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	8	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0835	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0835	TRUE	0	0	0	434	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	15	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	113	1	0.14	0.95	0.0417	0.1565	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.95	0.1982	FALSE	344	826	44	306	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0.0209	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0939	FALSE	462	80	0	856	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	7	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	48	1	0.14	0.89	0.073	0.0104	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.89	0.0834	FALSE	59	21	0	114	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	11	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	227	0	0.06	1	0.0417	0.1148	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.1565	FALSE	344	827	44	306	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	6	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19673	12	0	0.48	0.0522	0.0626	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.48	0.1148	FALSE	231	217	16	283	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCARB1--UBC	6	2	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	592	71	0.01	0.1	0.0626	0.0209	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.1	0.0835	FALSE	55	66	6	101	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	20885	0	0	1	0.0522	0.0522	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1044	FALSE	231	217	16	283	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	8	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	19549	0	0	1	0.0417	0.0835	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1252	FALSE	231	217	16	283	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	5	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	59	1	0.12	0.89	0.0522	0.0313	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.89	0.0835	FALSE	59	21	0	114	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	11	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	92	0	0.13	1	0.0313	0.1148	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.1461	FALSE	344	826	44	306	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL12--GAS5	5	3	RPL12	3125	chr9:130211560:-	GAS5	11911	chr1:173833842:-	ONLY_REF_SPLICE	YES	4943	1636	0	0	0.0522	0.0313	RPL12->chr9:130209953-130213684:-,ribosomal_protein_L12,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0835	FALSE	0	1	0	5	1	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ND4L	5	1	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2167	0	0	1	0.0522	0.0104	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0626	FALSE	1	1	0	107	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	15182	2064	0	0	0.0522	0.0104	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0626	FALSE	231	204	14	283	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0209	0.1356	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.1565	FALSE	275	511	55	178	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP13-188A5.1--KLF8	3	9	RP13-188A5.1	2795	chrX:56041394:+	KLF8	7929	chrX:56276664:+	INCL_NON_REF_SPLICE	YES	3	121	0.8	0.09	0.0313	0.0939	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.8	0.1252	TRUE	1	15	1	5	11	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0522	FALSE	351	233	23	137	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	4	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	22883	859	0	0.01	0.0417	0.0417	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0834	FALSE	231	217	16	283	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	8	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	19032	0	0	1	0.0313	0.0835	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1148	FALSE	231	217	16	283	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0522	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0522	TRUE	465	1949	224	605	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	1	0.93	0.93	0.0209	0.1252	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.93	0.1461	FALSE	467	2173	244	435	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	4	3	MT-ND1	1267	chrM:3573:+	MT-RNR2	6490	chrM:3204:+	INCL_NON_REF_SPLICE	YES	57	0	0.11	1	0.0417	0.0313	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.073	FALSE	92	21	4	61	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	7	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	19270	0	0	1	0.0313	0.073	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1043	FALSE	231	217	16	283	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MS4A1	4	3	MT-ND5	1665	chrM:13001:+	MS4A1	5969	chr11:60223381:+	INCL_NON_REF_SPLICE	YES	5106	190	0	0.04	0.0417	0.0313	MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MS4A1->chr11:60223225-60238233:+,membrane_spanning_4-domains_A1	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.073	FALSE	0	0	0	3	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	3	7	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	4	5067	0.71	0	0.0313	0.073	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.71	0.1043	FALSE	26	124	4	93	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	4	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0417	0.0209	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0626	TRUE	0	1	0	84	1	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	6	MT-ND1	1272	chrM:3578:+	MT-RNR2	5546	chrM:2260:+	INCL_NON_REF_SPLICE	YES	62	11203	0.13	0	0.0313	0.0626	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.13	0.0939	FALSE	120	26	5	87	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	12331	29340	0	0	0.0417	0.0104	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0521	FALSE	183	104	9	328	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13416	32323	0	0	0.0417	0.0104	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0521	FALSE	183	104	9	328	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20885	0	0	1	0.0313	0.0522	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0835	FALSE	231	217	16	283	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP13-188A5.1--KLF8	3	5	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	28	121	0.22	0.06	0.0313	0.0522	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.22	0.0835	TRUE	10	78	6	20	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAEA--CTBP1	4	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0417	TRUE	3	14	2	43	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	16910	12	0	0.37	0.0313	0.0417	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.37	0.073	FALSE	231	205	14	283	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	1531	chrM:11290:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	23441	12	0	0.37	0.0313	0.0417	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.37	0.073	FALSE	231	217	16	283	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0417	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0417	FALSE	462	80	0	856	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0417	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0417	TRUE	0	0	0	434	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0417	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0417	TRUE	22	156	2	142	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	3	3	IGH@	97649	chr14:106321045:-	TMSB4X	131824	chrX:12993249:+	INCL_NON_REF_SPLICE	YES	11047	0	0	1	0.0313	0.0313	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0626	FALSE	0	0	0	6	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	3	3	MT-ATP6	1572	chrM:9098:+	MT-CO2	4969	chrM:7873:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.67	0.0313	0.0313	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0626	FALSE	59	21	0	114	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	3	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4379	0	0	1	0.0313	0.0209	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0522	FALSE	13	9	0	364	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	3	2	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0.0209	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0522	TRUE	0	1	0	84	1	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0.0209	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0522	FALSE	462	80	0	856	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	2	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0.0209	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0522	FALSE	462	80	0	856	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1136	chrM:8662:+	MT-CO1	5337	chrM:6559:+	INCL_NON_REF_SPLICE	YES	14052	33002	0	0	0.0313	0.0104	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0417	FALSE	183	104	9	328	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14380	107	0	0.04	0.0313	0.0104	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0417	FALSE	230	198	14	283	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	14286	0	0	1	0.0313	0.0104	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0417	FALSE	230	197	14	283	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	1	MT-TA	1053	chrM:5603:-	MT-TC	4023	chrM:5873:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0.0104	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0417	FALSE	462	80	0	856	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JUP--MT-CO3	3	0	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0313	FALSE	0	0	0	33	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	8	KANSL1	7536	chr17:44248221:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	51	133	0.15	0.06	0.0104	0.0835	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.15	0.0939	TRUE	0	0	0	6	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLF2--MT-ND4	3	0	MLF2	5980	chr12:6859077:-	MT-ND4	11354	chrM:11226:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	MLF2->chr12:6857170-6876641:-,myeloid_leukemia_factor_2,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0313	FALSE	0	0	0	1	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0313	TRUE	0	0	0	434	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	92	0	0.04	1	0.0209	0.0209	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0418	FALSE	272	151	14	158	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--RAC2	2	1	OAZ1	1259	chr19:2269743:+	RAC2	13881	chr22:37622843:-	ONLY_REF_SPLICE	YES	4554	1690	0	0	0.0209	0.0104	GTEx&tcga_normals:8/3694=0.22%,GTEx:0.08%,GTEx_FI:{Whole_Blood=[count:17=pct:12.9],Blood=[count:13=pct:7.5]},GTEx_v2:{count=20;pct=0.23%;dist=Whole_Blood=20},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,RAC2->Oncogene{Bushman},chr22:37621301-37640488:-,ras-related_C3_botulinum_toxin_substrate_2_(rho_family,_small_GTP_binding_protein_Rac2)	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0313	FALSE	28	1	0	2	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--FUS	2	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	653	1246	0	0	0.0209	0.0104	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0313	FALSE	5	20	0	32	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BPGM--DGKI	2	0	BPGM	1130	chr7:134331689:+	DGKI	49419	chr7:137096953:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+,DGKI->chr7:137065783-137531838:-,diacylglycerol_kinase_iota	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf25--DAZAP1	2	0	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	6	7	1	24	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--CHMP1A	2	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	95	74	6	34	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYL6--C6orf136	2	0	MYL6	2462	chr12:56553406:+	C6orf136	11145	chr6:30617335:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,C6orf136->chr6:30614816-30620987:+,chromosome_6_open_reading_frame_136	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCARB1--UBC	1	2	SCARB1	16492	chr12:125279741:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	747	71	0	0.04	0.0104	0.0209	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0313	FALSE	0	0	0	1	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--SNX5	1	1	DANCR	1530	chr4:53579126:+	SNX5	10453	chr20:17941969:-	ONLY_REF_SPLICE	YES	1382	1778	0	0	0.0104	0.0104	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0208	FALSE	0	0	0	7	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX31--CHD6	1	1	DDX31	19412	chr9:135505651:-	CHD6	50936	chr20:40086068:-	ONLY_REF_SPLICE	NO	122	46	0.02	0.04	0.0104	0.0104	DDX31->DEAD-box_helicase_31,chr9:135468384-135545788:-,CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND3--PSMA7	1	1	DENND3	2285	chr8:142138908:+	PSMA7	41890	chr20:60716000:-	ONLY_REF_SPLICE	NO	280	2366	0.01	0	0.0104	0.0104	DENND3->DENN_domain_containing_3,chr8:142127377-142205907:+,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GUCY1B3--CHMP1A	1	1	GUCY1B3	5241	chr4:156698794:+	CHMP1A	26061	chr16:89713739:-	ONLY_REF_SPLICE	YES	491	465	0	0	0.0104	0.0104	GUCY1B3->chr4:156680144-156728743:+,guanylate_cyclase_1,_soluble,_beta_3,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IFI44L--FUT8	1	1	IFI44L	1650	chr1:79086256:+	FUT8	25485	chr14:65922339:+	ONLY_REF_SPLICE	YES	96	167	0.02	0.01	0.0104	0.0104	IFI44L->chr1:79085607-79111830:+,interferon_induced_protein_44_like,FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	1	1	LINC00299	13051	chr2:8383695:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0104	0.0104	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0208	TRUE	2	12	0	3	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	1	1	LINC00299	17125	chr2:8200478:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0104	0.0104	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0208	TRUE	20	19	0	15	0	FALSE	ACH-000080
BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFAS1--FBXL12	1	1	ZFAS1	2031	chr20:47895745:+	FBXL12	13997	chr19:9922393:-	ONLY_REF_SPLICE	NO	959	114	0	0.02	0.0104	0.0104	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,FBXL12->F-box_and_leucine-rich_repeat_protein_12,chr19:9920943-9938492:-	BDCM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000080
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--AC096579.13	2183	12	IGKV4-1	1756	chr2:89185668:+	AC096579.13	4759	chr2:89161074:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	25.8085	0.1419	GTEx_FI:{Lung=[count:66=pct:39.5],Blood=[count:50=pct:28.7],Whole_Blood=[count:39=pct:29.5],Spleen=[count:38=pct:33.9],Esophagus=[count:32=pct:7.9],Blood_Vessel=[count:26=pct:7.0],Stomach=[count:24=pct:27.0],Adipose_Tissue=[count:21=pct:7.0],Thyroid=[count:20=pct:11.3],Breast=[count:20=pct:18.0],Liver=[count:19=pct:15.7],Small_Intestine=[count:19=pct:34.5],Colon=[count:16=pct:8.4],Nerve=[count:8=pct:4.7],Salivary_Gland=[count:8=pct:20.5],Vagina=[count:6=pct:10.9],Pancreas=[count:6=pct:3.3],Heart=[count:5=pct:2.0],Ovary=[count:5=pct:9.4],Uterus=[count:4=pct:9.3],Prostate=[count:4=pct:6.6],Kidney=[count:3=pct:21.4],Cervix_Uteri=[count:2=pct:25.0],Skin=[count:2=pct:0.6],Testis=[count:2=pct:1.9],Adrenal_Gland=[count:2=pct:2.4],Brain=[count:1=pct:0.2],Muscle=[count:1=pct:0.4],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},LOCAL_INVERSION:+:-:[23838],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,AC096579.13->chr2:89109984-89161075:-	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	25.9504	TRUE	254	1311	97	3	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	115	49	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3596	0.5793	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.9389	TRUE	508	994	45	981	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	R3HCC1L--HTRA1	56	118	R3HCC1L	3647	chr10:99923154:+	HTRA1	20613	chr10:124266207:+	ONLY_REF_SPLICE	YES	19	0	0.9	1	0.6621	1.3951	R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+,HTRA1->HtrA_serine_peptidase_1,Oncogene{Bushman},chr10:124221041-124274424:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	2.0572	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	82	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9694	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9694	FALSE	369	2501	205	193	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	68	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	378	21	0.17	0.78	0.8039	0.0946	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.78	0.8985	TRUE	519	3926	326	965	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	63	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7448	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7448	TRUE	0	0	0	518	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	41	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4847	0.0709	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5556	FALSE	462	80	0	856	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--AC096579.7	1	154	IGKV4-1	1224	chr2:89185136:+	AC096579.7	7479	chr2:89157196:-	ONLY_REF_SPLICE	YES	705	0	0.18	1	0.0118	1.8207	GTEx_FI:{Lung=[count:127=pct:76.0],Spleen=[count:111=pct:99.1],Blood=[count:103=pct:59.2],Colon=[count:92=pct:48.2],Whole_Blood=[count:90=pct:68.2],Esophagus=[count:72=pct:17.8],Blood_Vessel=[count:60=pct:16.3],Stomach=[count:59=pct:66.3],Adipose_Tissue=[count:54=pct:18.1],Breast=[count:49=pct:44.1],Small_Intestine=[count:48=pct:87.3],Liver=[count:46=pct:38.0],Thyroid=[count:41=pct:23.2],Salivary_Gland=[count:33=pct:84.6],Vagina=[count:18=pct:32.7],Pancreas=[count:14=pct:7.7],Prostate=[count:14=pct:23.0],Nerve=[count:12=pct:7.1],Skin=[count:12=pct:3.8],Uterus=[count:6=pct:14.0],Ovary=[count:6=pct:11.3],Kidney=[count:5=pct:35.7],Heart=[count:5=pct:2.0],Adrenal_Gland=[count:4=pct:4.7],Muscle=[count:3=pct:1.3],Testis=[count:3=pct:2.9],Fallopian_Tube=[count:3=pct:50.0],Bladder=[count:3=pct:33.3],Cervix_Uteri=[count:2=pct:25.0],Brain=[count:2=pct:0.3],Pituitary=[count:2=pct:3.8]},LOCAL_INVERSION:+:-:[19260],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,AC096579.7->chr2:89130700-89165653:-	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	1.8325	TRUE	246	1363	131	3	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POU2F1--ETV7	23	16	POU2F1	17759	chr1:167353188:+	ETV7	47130	chr6:36341355:-	ONLY_REF_SPLICE	YES	13	2	0.75	0.95	0.2719	0.1892	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ETV7->ETS_variant_7,chr6:36322419-36356164:-	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.95	0.4611	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	16	35	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	273	53	0.16	0.49	0.1892	0.4138	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.49	0.603	TRUE	267	562	48	632	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	14	39	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	278	52	0.16	0.5	0.1655	0.4611	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.5	0.6266	TRUE	267	562	48	632	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	7	41	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0828	0.4847	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5675	FALSE	369	2501	205	193	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRR4--TMEM117	11	13	PRR4	2363	chr12:11273609:-	TMEM117	30474	chr12:44537328:+	ONLY_REF_SPLICE	YES	26	6	0.48	0.8	0.13	0.1537	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.8	0.2837	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	30	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0709	0.3547	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4256	FALSE	369	2501	205	193	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRR4--TMEM117	11	8	PRR4	1192	chr12:11324021:-	TMEM117	31574	chr12:44605073:+	ONLY_REF_SPLICE	YES	26	6	0.42	0.76	0.13	0.0946	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.76	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	9	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1064	0.1419	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2483	FALSE	515	4851	409	746	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	8	15	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0946	0.1773	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2719	FALSE	369	2501	205	193	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	11	1	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.13	0.0118	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.1418	TRUE	0	0	0	81	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	11	1	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.13	0.0118	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1418	FALSE	369	2501	205	193	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ND4L	10	2	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1737	0	0.01	1	0.1182	0.0236	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1418	FALSE	1	1	0	107	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	24	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0.2837	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.331	FALSE	369	2501	205	193	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4XP8	9	2	IGH@	97640	chr14:106321054:-	TMSB4XP8	131814	chr4:91760251:-	INCL_NON_REF_SPLICE	YES	8104	0	0	1	0.1064	0.0236	IGH@->Oncogene{Bushman},TMSB4XP8->chr4:91759652-91760263:-,thymosin_beta_4,_X-linked_pseudogene_8	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.13	TRUE	0	0	0	3	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	3	24	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.2837	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3192	FALSE	369	2501	205	193	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRR4--TMEM117	5	12	PRR4	1192	chr12:11324021:-	TMEM117	30474	chr12:44537328:+	ONLY_REF_SPLICE	YES	26	6	0.4	0.74	0.0591	0.1419	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.74	0.201	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP5C--MT-ND4	7	0	PPP5C	11730	chr19:46891705:+	MT-ND4	18907	chrM:11100:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0828	0	PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0828	FALSE	0	0	0	1	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--AC096579.13	3	12	IGKV4-1	1752	chr2:89185664:+	AC096579.13	4755	chr2:89161078:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.1419	GTEx_FI:{Lung=[count:66=pct:39.5],Blood=[count:50=pct:28.7],Whole_Blood=[count:39=pct:29.5],Spleen=[count:38=pct:33.9],Esophagus=[count:32=pct:7.9],Blood_Vessel=[count:26=pct:7.0],Stomach=[count:24=pct:27.0],Adipose_Tissue=[count:21=pct:7.0],Thyroid=[count:20=pct:11.3],Breast=[count:20=pct:18.0],Liver=[count:19=pct:15.7],Small_Intestine=[count:19=pct:34.5],Colon=[count:16=pct:8.4],Nerve=[count:8=pct:4.7],Salivary_Gland=[count:8=pct:20.5],Vagina=[count:6=pct:10.9],Pancreas=[count:6=pct:3.3],Heart=[count:5=pct:2.0],Ovary=[count:5=pct:9.4],Uterus=[count:4=pct:9.3],Prostate=[count:4=pct:6.6],Kidney=[count:3=pct:21.4],Cervix_Uteri=[count:2=pct:25.0],Skin=[count:2=pct:0.6],Testis=[count:2=pct:1.9],Adrenal_Gland=[count:2=pct:2.4],Brain=[count:1=pct:0.2],Muscle=[count:1=pct:0.4],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},LOCAL_INVERSION:+:-:[23838],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,AC096579.13->chr2:89109984-89161075:-	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1774	TRUE	254	1311	97	3	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	3	12	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.1419	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1774	FALSE	369	2501	205	193	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0355	0.1419	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.1774	FALSE	467	2173	244	435	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0.0709	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1182	FALSE	462	80	0	856	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	5	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0591	TRUE	0	5	1	24	1	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.93	1	0.0236	0.1419	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1655	FALSE	407	2205	196	549	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	5	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0591	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0591	TRUE	62	24	1	171	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	7	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.0828	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1183	FALSE	462	80	0	856	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF3A1--MT-ND4L	4	2	SF3A1	10400	chr22:30734795:-	MT-ND4L	19948	chrM:10471:+	INCL_NON_REF_SPLICE	YES	242	0	0.02	1	0.0473	0.0236	SF3A1->chr22:30727977-30752936:-,splicing_factor_3a_subunit_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0709	FALSE	0	0	0	1	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0473	0.0118	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0591	FALSE	292	1546	117	613	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0473	FALSE	462	80	0	856	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--B2M	4	0	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0473	TRUE	0	0	0	28	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	3	2	TIMM23B	1257	chr10:51371646:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	546	0	0.01	1	0.0355	0.0236	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0591	FALSE	0	0	0	10	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	68	2534	0.06	0	0.0355	0.0118	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.0473	FALSE	0	0	0	434	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0355	TRUE	0	0	0	434	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB14--MT-ND4L	3	0	RAB14	10067	chr9:123943658:-	MT-ND4L	16313	chrM:10472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	RAB14->RAB14,_member_RAS_oncogene_family,chr9:123940415-123985292:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0355	FALSE	0	0	0	1	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A5--MT-ATP8	3	0	SLC7A5	8062	chr16:87871480:-	MT-ATP8	17648	chrM:8433:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0355	FALSE	0	0	0	2	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12A--CAND1	2	2	PPP1R12A	32520	chr12:80172330:-	CAND1	41489	chr12:67675690:+	ONLY_REF_SPLICE	YES	59	140	0.06	0.03	0.0236	0.0236	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.06	0.0472	TRUE	0	0	0	1	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	2	2	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	590	21	0.01	0.16	0.0236	0.0236	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.16	0.0472	FALSE	5	8	0	33	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKHD1--CYSTM1	2	1	ANKHD1	1460	chr5:139781858:+	CYSTM1	47050	chr5:139622890:+	ONLY_REF_SPLICE	YES	114	387	0.03	0.01	0.0236	0.0118	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,CYSTM1->chr5:139554227-139661637:+,cysteine_rich_transmembrane_module_containing_1	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0354	FALSE	1	2	1	5	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.25	0.0236	0.0118	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0354	TRUE	458	1351	185	561	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--MAEA	2	1	UVSSA	7499	chr4:1349033:+	MAEA	36799	chr4:1326545:+	ONLY_REF_SPLICE	YES	29	342	0.09	0.01	0.0236	0.0118	GTEx_FI:{Blood=[count:5=pct:2.9],Skin=[count:4=pct:1.3],Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:1=pct:0.8],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[7119],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.09	0.0354	FALSE	8	1	0	2	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC003005.4--UBE3C	2	0	AC003005.4	3523	chr19:58016154:+	UBE3C	14762	chr7:156974212:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	AC003005.4->chr19:57999086-58016749:+,UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADK--GTF2I	2	0	ADK	1142	chr10:75911101:+	GTF2I	22620	chr7:74103458:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ADK->adenosine_kinase,chr10:75910960-76469061:+,GTF2I->chr7:74071994-74175026:+,general_transcription_factor_IIi	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD46P1--DEAF1	2	0	CD46P1	1097	chr1:207818675:+	DEAF1	25866	chr11:654051:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	CD46P1->CD46_molecule_pseudogene_1,chr1:207818579-207830755:+,DEAF1->DEAF1,_transcription_factor,chr11:644233-706715:-	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT3--NOC4L	2	0	CNOT3	1266	chr19:54641709:+	NOC4L	23005	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	CNOT3->CCR4-NOT_transcription_complex_subunit_3,chr19:54641444-54659419:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COA1--STK17A	2	0	COA1	1289	chr7:43769028:-	STK17A	27976	chr7:43635500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEIGHBORS_OVERLAP:-:+:[18330],COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,STK17A->chr7:43622357-43666385:+,serine/threonine_kinase_17a	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	FALSE	0	3	1	13	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCUN1D2--TFDP1	2	0	DCUN1D2	1286	chr13:114144982:-	TFDP1	18891	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[93746],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	1	0	6	1	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR3--DOPEY2	2	0	DSCR3	1724	chr21:38639539:-	DOPEY2	23064	chr21:37571368:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,DOPEY2->Oncogene{Bushman},chr21:37529080-37666572:+,dopey_family_member_2	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGSF1--KCNQ5	2	0	IGSF1	7284	chrX:130433625:-	KCNQ5	28113	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	IGSF1->chrX:130407480-130533677:-,immunoglobulin_superfamily_member_1,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	R3HCC1L--TSPAN3	2	0	R3HCC1L	1077	chr10:99894463:+	TSPAN3	20788	chr15:77348597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+,TSPAN3->chr15:77336359-77376326:-,tetraspanin_3	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--SNX5	2	0	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	5	0	11	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-305P22.9--HNRNPK	2	0	RP11-305P22.9	1091	chr20:61640825:+	HNRNPK	11439	chr9:86593367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	RP11-305P22.9->chr20:61640735-61716423:+,HNRNPK->Oncogene{Bushman},chr9:86582998-86595569:-,heterogeneous_nuclear_ribonucleoprotein_K	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-662B19.2--WDR37	2	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	31	42	1	25	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	465	1949	224	605	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEPT7--HERPUD2	2	0	SEPT7	1339	chr7:35840880:+	HERPUD2	33988	chr7:35678082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Gastroesophageal_Junction=1},SEPT7->chr7:35840542-35944917:+,septin_7,HERPUD2->HERPUD_family_member_2,chr7:35672269-35735181:-	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--GNAS	2	0	SF1	3289	chr11:64543970:-	GNAS	32063	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_FI:{Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=3,Pituitary=3,Minor_Salivary_Gland=1,Brain_-_Hypothalamus=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	4	13	1	15	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF850--AGO3	2	0	ZNF850	1101	chr19:37263627:-	AGO3	25120	chr1:36469942:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZNF850->chr19:37205285-37263727:-,zinc_finger_protein_850,AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPA9--UBE2D2	1	2	HSPA9	5150	chr5:137904614:-	UBE2D2	23963	chr5:139002953:+	ONLY_REF_SPLICE	NO	1496	470	0	0.01	0.0118	0.0236	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0354	FALSE	0	0	0	1	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C7orf50--SUN1	1	1	C7orf50	6340	chr7:1067894:-	SUN1	27313	chr7:888055:+	ONLY_REF_SPLICE	YES	639	230	0	0.01	0.0118	0.0118	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C9orf85--ABHD17B	1	1	C9orf85	1327	chr9:74526752:+	ABHD17B	16272	chr9:74489999:-	ONLY_REF_SPLICE	YES	154	52	0.01	0.04	0.0118	0.0118	LOCAL_INVERSION:+:-:[579],C9orf85->chr9:74526426-74600970:+,chromosome_9_open_reading_frame_85,ABHD17B->abhydrolase_domain_containing_17B,chr9:74477368-74525847:-	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0236	FALSE	1	0	0	2	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMC1--TOP2B	1	1	CMC1	3625	chr3:28304871:+	TOP2B	51754	chr3:25642716:-	ONLY_REF_SPLICE	YES	353	260	0.01	0.01	0.0118	0.0118	GTEx&tcga_normals:1/3694=0.03%,CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+,TOP2B->Oncogene{Bushman},chr3:25639475-25706398:-,topoisomerase_(DNA)_II_beta	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IPO9--TOR1AIP1	1	1	IPO9	13009	chr1:201828122:+	TOR1AIP1	46369	chr1:179883133:+	ONLY_REF_SPLICE	YES	123	124	0.02	0.02	0.0118	0.0118	IPO9->chr1:201798269-201853422:+,importin_9,TOR1AIP1->chr1:179851177-179894135:+,torsin_1A_interacting_protein_1	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEP15--UBAP2	1	1	SEP15	2787	chr1:87368964:-	UBAP2	28934	chr9:33948585:-	ONLY_REF_SPLICE	NO	1815	141	0	0.01	0.0118	0.0118	SEP15->chr1:87328132-87380107:-,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIFA--ENOPH1	1	1	TIFA	1264	chr4:113206796:-	ENOPH1	11603	chr4:83369073:+	ONLY_REF_SPLICE	YES	802	225	0	0.01	0.0118	0.0118	TIFA->TRAF_interacting_protein_with_forkhead_associated_domain,chr4:113195698-113207059:-,ENOPH1->chr4:83351715-83382244:+,enolase-phosphatase_1	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIPIN--CD22	1	1	TIPIN	5217	chr15:66645153:-	CD22	23406	chr19:35831784:+	ONLY_REF_SPLICE	YES	302	1529	0.01	0	0.0118	0.0118	TIPIN->TIMELESS_interacting_protein,chr15:66628544-66679084:-,CD22->CD22_molecule,chr19:35810164-35838258:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLE3--SNHG17	1	1	TLE3	4645	chr15:70386871:-	SNHG17	35128	chr20:37049745:-	ONLY_REF_SPLICE	NO	108	134	0.02	0.01	0.0118	0.0118	TLE3->chr15:70340129-70390515:-,transducin_like_enhancer_of_split_3,SNHG17->chr20:37049235-37063996:-,small_nucleolar_RNA_host_gene_17	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VAV2--DNAJC5	1	1	VAV2	1530	chr9:136857197:-	DNAJC5	43526	chr20:62562818:+	ONLY_REF_SPLICE	YES	108	146	0.02	0.01	0.0118	0.0118	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,DNAJC5->DnaJ_heat_shock_protein_family_(Hsp40)_member_C5,chr20:62526518-62567384:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000405
MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZDHHC14--ARID1B	1	1	ZDHHC14	3295	chr6:157963777:+	ARID1B	25905	chr6:157150361:+	ONLY_REF_SPLICE	NO	31	15	0.06	0.12	0.0118	0.0118	ZDHHC14->Oncogene{Bushman},chr6:157802165-158099178:+,zinc_finger_DHHC-type_containing_14,ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+	MEC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.12	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000405
SKMEL30_SKIN	TIMM23B--LINC00843	96	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2344	0.3472	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKMEL30_SKIN	1	1	1.5816	TRUE	508	994	45	981	0	FALSE	ACH-000810
SKMEL30_SKIN	TIMM23--RP11-464F9.1	53	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	303	3	0.16	0.95	0.6815	0.0386	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKMEL30_SKIN	0.16	0.95	0.7201	TRUE	519	3926	326	965	0	FALSE	ACH-000810
SKMEL30_SKIN	MT-TA--MT-TC	31	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3986	0.0257	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL30_SKIN	1	1	0.4243	FALSE	462	80	0	856	0	FALSE	ACH-000810
SKMEL30_SKIN	MT-ND6--MT-TE	23	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2957	0.0257	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL30_SKIN	1	1	0.3214	FALSE	499	1288	110	792	0	FALSE	ACH-000810
SKMEL30_SKIN	RP11-444D3.1--SOX5	17	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	12	1	0.67	0.2186	0.09	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL30_SKIN	0.67	1	0.3086	TRUE	477	1352	189	275	0	FALSE	ACH-000810
SKMEL30_SKIN	PTPN12--PHTF2	10	5	PTPN12	9763	chr7:77214898:+	PHTF2	32326	chr7:77522925:+	ONLY_REF_SPLICE	YES	105	67	0.12	0.18	0.1286	0.0643	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2	SKMEL30_SKIN	0.12	0.18	0.1929	TRUE	0	1	0	1	1	TRUE	ACH-000810
SKMEL30_SKIN	SCARB1--UBC	10	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1286	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SKMEL30_SKIN	1	1	0.1286	TRUE	55	66	6	101	0	FALSE	ACH-000810
SKMEL30_SKIN	MT-TA--MT-TC	8	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1029	0.0257	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL30_SKIN	1	1	0.1286	FALSE	462	80	0	856	0	FALSE	ACH-000810
SKMEL30_SKIN	MT-ATP6--MT-CO1	7	2	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	YES	4714	18211	0	0	0.09	0.0257	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL30_SKIN	0	0	0.1157	FALSE	183	104	9	328	0	FALSE	ACH-000810
SKMEL30_SKIN	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4015	0	0	1	0.0771	0.0129	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL30_SKIN	0	1	0.09	FALSE	13	9	0	364	0	FALSE	ACH-000810
SKMEL30_SKIN	MT-ND6--MT-TE	5	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0643	0.0643	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL30_SKIN	0.83	1	0.1286	FALSE	499	1288	110	792	0	FALSE	ACH-000810
SKMEL30_SKIN	FTH1--ACTG1	6	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0771	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SKMEL30_SKIN	1	1	0.0771	TRUE	0	0	0	64	0	FALSE	ACH-000810
SKMEL30_SKIN	UTRN--STXBP5-AS1	5	3	UTRN	70061	chr6:145103259:+	STXBP5-AS1	110809	chr6:147172467:-	ONLY_REF_SPLICE	YES	45	2	0.15	0.8	0.0643	0.0386	UTRN->chr6:144606837-145174170:+,utrophin,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	SKMEL30_SKIN	0.15	0.8	0.1029	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	MT-ND6--MT-TE	5	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0643	0.0257	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL30_SKIN	1	1	0.09	FALSE	499	1288	110	792	0	FALSE	ACH-000810
SKMEL30_SKIN	RP11-141M1.3--STARD13	5	2	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	4	4	0.64	0.64	0.0643	0.0257	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMEL30_SKIN	0.64	0.64	0.09	FALSE	49	120	16	70	0	FALSE	ACH-000810
SKMEL30_SKIN	HSP90AB1--MT-RNR2	5	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4038	0	0	1	0.0643	0.0129	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL30_SKIN	0	1	0.0772	FALSE	13	9	0	364	0	FALSE	ACH-000810
SKMEL30_SKIN	FUBP1--IVNS1ABP	5	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0643	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	SKMEL30_SKIN	1	1	0.0643	TRUE	1	4	0	16	0	TRUE	ACH-000810
SKMEL30_SKIN	RNF207--CEP104	5	0	RNF207	11299	chr1:6279938:+	CEP104	39769	chr1:3729339:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0643	0	RNF207->chr1:6265535-6281359:+,ring_finger_protein_207,CEP104->centrosomal_protein_104,chr1:3728645-3773778:-	SKMEL30_SKIN	1	1	0.0643	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	RP11-444D3.1--SOX5	3	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	15	1	0.4	0.0386	0.09	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL30_SKIN	0.4	1	0.1286	TRUE	160	277	29	98	0	FALSE	ACH-000810
SKMEL30_SKIN	UTRN--STXBP5-AS1	3	6	UTRN	70061	chr6:145103259:+	STXBP5-AS1	109683	chr6:147181879:-	ONLY_REF_SPLICE	YES	45	0	0.17	1	0.0386	0.0771	UTRN->chr6:144606837-145174170:+,utrophin,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	SKMEL30_SKIN	0.17	1	0.1157	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	CHSY3--HSPA8P4	4	1	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	7	0	0.42	1	0.0514	0.0129	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	SKMEL30_SKIN	0.42	1	0.0643	FALSE	89	26	1	44	0	FALSE	ACH-000810
SKMEL30_SKIN	HIPK3--KIAA1549L	4	1	HIPK3	14963	chr11:33370833:+	KIAA1549L	38901	chr11:33620366:+	ONLY_REF_SPLICE	YES	27	34	0.16	0.13	0.0514	0.0129	HIPK3->chr11:33278218-33378569:+,homeodomain_interacting_protein_kinase_3,KIAA1549L->KIAA1549-like,chr11:33563618-33695648:+	SKMEL30_SKIN	0.13	0.16	0.0643	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	FHOD3--GALNT1	4	0	FHOD3	3459	chr18:33952707:+	GALNT1	48552	chr18:33263355:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0514	0	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,GALNT1->chr18:33161081-33291798:+,polypeptide_N-acetylgalactosaminyltransferase_1	SKMEL30_SKIN	1	1	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	MT-ATP6--MT-CO1	4	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0514	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL30_SKIN	1	1	0.0514	FALSE	183	104	9	328	0	FALSE	ACH-000810
SKMEL30_SKIN	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0514	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL30_SKIN	1	1	0.0514	FALSE	183	104	9	328	0	FALSE	ACH-000810
SKMEL30_SKIN	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0.0257	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL30_SKIN	1	1	0.0643	FALSE	462	80	0	856	0	FALSE	ACH-000810
SKMEL30_SKIN	POLR2L--MT-ND4L	3	1	POLR2L	2292	chr11:840321:-	MT-ND4L	7144	chrM:10471:+	INCL_NON_REF_SPLICE	YES	166	0	0.02	1	0.0386	0.0129	POLR2L->chr11:837356-842545:-,polymerase_(RNA)_II_subunit_L,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL30_SKIN	0.02	1	0.0515	FALSE	0	0	0	4	0	FALSE	ACH-000810
SKMEL30_SKIN	RP1-34H18.1--NAV3	2	5	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.0257	0.0643	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SKMEL30_SKIN	0.88	1	0.09	TRUE	254	575	65	124	0	FALSE	ACH-000810
SKMEL30_SKIN	FTH1--ACTG1	3	0	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SKMEL30_SKIN	1	1	0.0386	TRUE	0	0	0	64	0	FALSE	ACH-000810
SKMEL30_SKIN	MT-ATP6--MT-CO1	3	0	MT-ATP6	1153	chrM:8679:+	MT-CO1	5318	chrM:6540:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL30_SKIN	1	1	0.0386	FALSE	183	104	9	328	0	FALSE	ACH-000810
SKMEL30_SKIN	MT-ATP6--MT-CO1	3	0	MT-ATP6	1107	chrM:8633:+	MT-CO1	5880	chrM:7102:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL30_SKIN	1	1	0.0386	FALSE	183	104	9	328	0	FALSE	ACH-000810
SKMEL30_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL30_SKIN	1	1	0.0386	FALSE	499	1288	110	792	0	FALSE	ACH-000810
SKMEL30_SKIN	SAMD5--SASH1	3	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SKMEL30_SKIN	1	1	0.0386	TRUE	53	396	64	110	0	FALSE	ACH-000810
SKMEL30_SKIN	NRIP1--AF127936.7	2	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0257	0.0257	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKMEL30_SKIN	0.8	1	0.0514	FALSE	292	1546	117	613	0	FALSE	ACH-000810
SKMEL30_SKIN	SSU72--ATAD3A	2	2	SSU72	1392	chr1:1509858:-	ATAD3A	26989	chr1:1469306:+	ONLY_REF_SPLICE	YES	475	293	0.01	0.01	0.0257	0.0257	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},LOCAL_INVERSION:-:+:[6986],SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-,ATAD3A->ATPase_family,_AAA_domain_containing_3A,chr1:1447531-1470067:+	SKMEL30_SKIN	0.01	0.01	0.0514	FALSE	1	0	0	2	0	FALSE	ACH-000810
SKMEL30_SKIN	YWHAE--CRK	2	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1497	94	0	0.04	0.0257	0.0257	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SKMEL30_SKIN	0	0.04	0.0514	FALSE	6	50	7	115	0	FALSE	ACH-000810
SKMEL30_SKIN	NCOR2--UBC	2	1	NCOR2	21671	chr12:124882665:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	55	42	0.05	0.07	0.0257	0.0129	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SKMEL30_SKIN	0.05	0.07	0.0386	TRUE	30	26	0	16	0	FALSE	ACH-000810
SKMEL30_SKIN	RP1-34H18.1--RP11-781A6.1	2	1	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0.0129	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	SKMEL30_SKIN	1	1	0.0386	TRUE	94	160	11	37	0	FALSE	ACH-000810
SKMEL30_SKIN	BSG--EEF1B2	2	0	BSG	2405	chr19:572701:+	EEF1B2	16370	chr2:207027213:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,EEF1B2->chr2:207024309-207027652:+,eukaryotic_translation_elongation_factor_1_beta_2	SKMEL30_SKIN	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	LRRC41--UQCRH	2	0	LRRC41	5703	chr1:46763235:-	UQCRH	20426	chr1:46774773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	LOCAL_INVERSION:-:+:[23],LRRC41->chr1:46726868-46769280:-,leucine_rich_repeat_containing_41,UQCRH->chr1:46769303-46782448:+,ubiquinol-cytochrome_c_reductase_hinge_protein	SKMEL30_SKIN	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	PTPN12--PHTF2	1	4	PTPN12	8159	chr7:77212967:+	PHTF2	32326	chr7:77522925:+	ONLY_REF_SPLICE	YES	86	67	0.05	0.07	0.0129	0.0514	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2	SKMEL30_SKIN	0.05	0.07	0.0643	TRUE	0	0	0	1	0	FALSE	ACH-000810
SKMEL30_SKIN	RP11-444D3.1--SOX5	1	4	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	12	1	0.29	0.0129	0.0514	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL30_SKIN	0.29	1	0.0643	TRUE	274	363	69	150	0	FALSE	ACH-000810
SKMEL30_SKIN	TBC1D23--TOMM70A	2	0	TBC1D23	1072	chr3:99979915:+	TOMM70A	28855	chr3:100105822:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	LOCAL_INVERSION:+:-:[38180],TBC1D23->TBC1_domain_family_member_23,chr3:99979844-100044095:+,TOMM70A->chr3:100082275-100120242:-	SKMEL30_SKIN	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	THRAP3--SFPQ	2	0	THRAP3	1090	chr1:36690106:+	SFPQ	33358	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	SKMEL30_SKIN	1	1	0.0257	TRUE	0	3	0	2	0	TRUE	ACH-000810
SKMEL30_SKIN	TIMM23--RP11-464F9.1	2	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	25333	chr10:75457478:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKMEL30_SKIN	1	1	0.0257	TRUE	3	0	0	2	0	FALSE	ACH-000810
SKMEL30_SKIN	TMEM55A--FASN	2	0	TMEM55A	1421	chr8:92052872:-	FASN	30418	chr17:80038466:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	TMEM55A->chr8:92006024-92053292:-,transmembrane_protein_55A,FASN->chr17:80036214-80056208:-,fatty_acid_synthase	SKMEL30_SKIN	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	ZADH2--MLLT1	2	0	ZADH2	1499	chr18:72920805:-	MLLT1	19127	chr19:6227113:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2,MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1	SKMEL30_SKIN	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000810
SKMEL30_SKIN	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	3	12	0.57	0.25	0.0129	0.0386	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL30_SKIN	0.25	0.57	0.0515	TRUE	16	11	2	20	0	FALSE	ACH-000810
SKMEL30_SKIN	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.19	1	0.0129	0.0257	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKMEL30_SKIN	0.19	1	0.0386	FALSE	164	806	69	479	0	FALSE	ACH-000810
SKMEL30_SKIN	NRIP1--AF127936.7	1	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	10	0	0.23	1	0.0129	0.0257	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKMEL30_SKIN	0.23	1	0.0386	FALSE	125	705	46	456	0	FALSE	ACH-000810
SKMEL30_SKIN	AP1M1--SAMD4B	1	1	AP1M1	6713	chr19:16319988:+	SAMD4B	34719	chr19:39873848:+	ONLY_REF_SPLICE	YES	257	59	0.01	0.03	0.0129	0.0129	AP1M1->adaptor_related_protein_complex_1_mu_1_subunit,chr19:16308389-16346160:+,SAMD4B->chr19:39833036-39876350:+,sterile_alpha_motif_domain_containing_4B	SKMEL30_SKIN	0.01	0.03	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000810
SKMEL30_SKIN	DANCR--GNB1	1	1	DANCR	1530	chr4:53579126:+	GNB1	9431	chr1:1770677:-	ONLY_REF_SPLICE	NO	640	32	0	0.06	0.0129	0.0129	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	SKMEL30_SKIN	0	0.06	0.0258	FALSE	0	0	0	8	0	FALSE	ACH-000810
SKMEL30_SKIN	DANCR--ITGB3BP	1	1	DANCR	1530	chr4:53579126:+	ITGB3BP	18619	chr1:63920639:-	ONLY_REF_SPLICE	YES	640	107	0	0.02	0.0129	0.0129	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	SKMEL30_SKIN	0	0.02	0.0258	FALSE	0	0	0	9	0	FALSE	ACH-000810
SKMEL30_SKIN	NUP98--RRM1	1	1	NUP98	12192	chr11:3774546:-	RRM1	51499	chr11:4128665:+	ONLY_REF_SPLICE	YES	78	207	0.03	0.01	0.0129	0.0129	NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,RRM1->Oncogene{Bushman},chr11:4115937-4160106:+,ribonucleotide_reductase_catalytic_subunit_M1	SKMEL30_SKIN	0.01	0.03	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000810
SKMEL30_SKIN	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	11074	chr13:33933602:-	STARD13	26750	chr13:33716510:-	ONLY_REF_SPLICE	YES	4	5	0.33	0.29	0.0129	0.0129	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMEL30_SKIN	0.29	0.33	0.0258	FALSE	0	1	0	6	0	FALSE	ACH-000810
SKMEL30_SKIN	RP11-53O19.1--NNT	1	1	RP11-53O19.1	1136	chr5:44808744:-	NNT	33871	chr5:43675613:+	ONLY_REF_SPLICE	YES	2	234	0.5	0.01	0.0129	0.0129	RP11-53O19.1->chr5:44745002-44808879:-,NNT->chr5:43602794-43707507:+,nicotinamide_nucleotide_transhydrogenase	SKMEL30_SKIN	0.01	0.5	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000810
SKMEL30_SKIN	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0129	0.0129	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKMEL30_SKIN	0.67	1	0.0258	FALSE	407	2205	196	549	0	FALSE	ACH-000810
SKMEL30_SKIN	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0129	0.0129	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKMEL30_SKIN	0.67	1	0.0258	FALSE	515	4851	409	746	0	FALSE	ACH-000810
SKMEL30_SKIN	WDR6--DDX5	1	1	WDR6	1470	chr3:49044964:+	DDX5	14854	chr17:62500960:-	ONLY_REF_SPLICE	YES	107	1101	0.02	0	0.0129	0.0129	WDR6->WD_repeat_domain_6,chr3:49044495-49053386:+,DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-	SKMEL30_SKIN	0	0.02	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000810
T47D_BREAST	TIMM23B--LINC00843	92	38	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1021	0.4552	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	T47D_BREAST	0.99	1	1.5573	TRUE	508	994	45	981	0	FALSE	ACH-000147
T47D_BREAST	KANSL1--ARL17B	74	43	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	71	176	0.62	0.4	0.8865	0.5151	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	T47D_BREAST	0.4	0.62	1.4016	TRUE	181	1564	124	196	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	47	30	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4	0	0.95	1	0.563	0.3594	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0.95	1	0.9224	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	ECD--RP11-119F19.2	43	44	ECD	2190	chr10:74927624:-	RP11-119F19.2	22778	chr10:81451812:-	ONLY_REF_SPLICE	YES	162	0	0.35	1	0.5151	0.5271	ECD->chr10:74889913-74928813:-,ecdysoneless_cell_cycle_regulator,RP11-119F19.2->chr10:81422844-81526085:-	T47D_BREAST	0.35	1	1.0422	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	TOP1MT--MAFA	45	30	TOP1MT	12572	chr8:144411520:-	MAFA	31899	chr8:144501508:-	ONLY_REF_SPLICE	YES	63	0	0.54	1	0.5391	0.3594	LOCAL_REARRANGEMENT:-:[59203],TOP1MT->chr8:144386554-144442149:-,topoisomerase_(DNA)_I,_mitochondrial,MAFA->Oncogene{Bushman},chr8:144501352-144512576:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_A	T47D_BREAST	0.54	1	0.8985	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	AMMECR1L--RP11-506M13.3	49	13	AMMECR1L	1113	chr2:128643384:-	RP11-506M13.3	17654	chr10:81429244:+	ONLY_REF_SPLICE	YES	16	3	0.79	0.95	0.587	0.1557	AMMECR1L->AMMECR1_like,chr2:128619204-128643496:-,RP11-506M13.3->chr10:81420647-81437248:+	T47D_BREAST	0.79	0.95	0.7427	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	3	192	MT-ND4	2281	chrM:12040:+	MT-ND4L	5383	chrM:10474:+	INCL_NON_REF_SPLICE	YES	103	0	0.65	1	0.0359	2.3001	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.65	1	2.336	FALSE	284	710	36	297	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	8	170	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	2027	0	0.08	1	0.0958	2.0366	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.08	1	2.1324	FALSE	344	827	44	306	0	FALSE	ACH-000147
T47D_BREAST	TIMM23--RP11-464F9.1	49	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	409	18	0.12	0.75	0.587	0.0719	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	T47D_BREAST	0.12	0.75	0.6589	TRUE	519	3926	326	965	0	FALSE	ACH-000147
T47D_BREAST	OR51S1--TP53I11	49	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.587	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	T47D_BREAST	1	1	0.587	TRUE	402	216	10	229	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	9	155	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	119	0	0.58	1	0.1078	1.8569	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.58	1	1.9647	FALSE	344	826	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	7	162	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	134	0	0.56	1	0.0839	1.9407	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.56	1	2.0246	FALSE	344	827	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	3	163	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	NO	137	0	0.55	1	0.0359	1.9527	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.55	1	1.9886	FALSE	344	827	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	4	151	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	78	0	0.67	1	0.0479	1.8089	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.67	1	1.8568	FALSE	344	826	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	3	149	MT-ND4	1110	chrM:10869:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	53	0	0.74	1	0.0359	1.785	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.74	1	1.8209	FALSE	344	826	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	3	138	MT-ND4	1100	chrM:10859:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	YES	47	1	0.75	0.99	0.0359	1.6532	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.75	0.99	1.6891	FALSE	344	826	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	33	16	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5343	18	0.01	0.73	0.3953	0.1917	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0.01	0.73	0.587	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	11	98	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	32	0	0.77	1	0.1318	1.174	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.77	1	1.3058	FALSE	344	821	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	35	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4193	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.4193	FALSE	230	193	14	283	0	FALSE	ACH-000147
T47D_BREAST	KIAA0232--RP11-325I22.2	34	1	KIAA0232	2467	chr4:6784568:+	RP11-325I22.2	25895	chr5:1364806:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4073	0.012	KIAA0232->KIAA0232,chr4:6783102-6885897:+,RP11-325I22.2->chr5:1363697-1380182:-	T47D_BREAST	1	1	0.4193	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	VGLL4--SH3BP5	28	22	VGLL4	17693	chr3:11643307:-	SH3BP5	32312	chr3:15372073:-	ONLY_REF_SPLICE	YES	94	7	0.35	0.88	0.3354	0.2636	VGLL4->chr3:11597544-11762220:-,vestigial_like_family_member_4,SH3BP5->SH3_domain_binding_protein_5,chr3:15296360-15382875:-	T47D_BREAST	0.35	0.88	0.599	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	3	121	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	36	0	0.78	1	0.0359	1.4495	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.78	1	1.4854	FALSE	344	826	44	306	0	FALSE	ACH-000147
T47D_BREAST	RERG--CBFB	27	17	RERG	6502	chr12:15370363:-	CBFB	19844	chr16:67100585:+	ONLY_REF_SPLICE	YES	94	77	0.32	0.36	0.3235	0.2037	RERG->RAS_like_estrogen_regulated_growth_inhibitor,chr12:15260717-15501609:-,CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit	T47D_BREAST	0.32	0.36	0.5272	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	27	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3235	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.3235	FALSE	230	198	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ND4	15	48	MT-ND5	2730	chrM:14066:+	MT-ND4	6214	chrM:11161:+	INCL_NON_REF_SPLICE	YES	4	23598	0.94	0	0.1797	0.575	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	T47D_BREAST	0	0.94	0.7547	FALSE	47	27	1	24	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	3	94	MT-ND4	1180	chrM:10939:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	NO	107	0	0.48	1	0.0359	1.1261	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.48	1	1.162	FALSE	344	826	44	306	0	FALSE	ACH-000147
T47D_BREAST	RP11-96H19.1--RP11-446N19.1	20	26	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	1	0.9	0.98	0.2396	0.3115	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	T47D_BREAST	0.9	0.98	0.5511	FALSE	515	4851	409	746	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	3	91	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	312	0	0.23	1	0.0359	1.0902	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.23	1	1.1261	FALSE	344	827	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	20	22	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	24256	137	0	0.23	0.2396	0.2636	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.23	0.5032	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	VPS26A--FAM149B1	19	26	VPS26A	2919	chr10:70892803:+	FAM149B1	22402	chr10:74968377:+	ONLY_REF_SPLICE	YES	239	39	0.16	0.54	0.2276	0.3115	VPS26A->VPS26_retromer_complex_component_A,chr10:70883268-70932617:+,FAM149B1->chr10:74927924-75004262:+,family_with_sequence_similarity_149_member_B1	T47D_BREAST	0.16	0.54	0.5391	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	MT-ND5--MT-ND4	4	83	MT-ND5	2813	chrM:14149:+	MT-ND4	5957	chrM:10904:+	INCL_NON_REF_SPLICE	YES	0	5013	1	0.02	0.0479	0.9943	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	T47D_BREAST	0.02	1	1.0422	FALSE	29	25	1	23	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ND4	11	52	MT-ND5	2455	chrM:13791:+	MT-ND4	5931	chrM:10878:+	INCL_NON_REF_SPLICE	YES	3128	2085	0.02	0.03	0.1318	0.6229	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	T47D_BREAST	0.02	0.03	0.7547	FALSE	29	26	1	23	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ND4	3	83	MT-ND5	2800	chrM:14136:+	MT-ND4	5942	chrM:10889:+	INCL_NON_REF_SPLICE	YES	0	3467	1	0.02	0.0359	0.9943	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	T47D_BREAST	0.02	1	1.0302	FALSE	29	25	1	23	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ND4	7	63	MT-ND5	2667	chrM:14003:+	MT-ND4	6019	chrM:10966:+	INCL_NON_REF_SPLICE	YES	1675	11844	0.04	0.01	0.0839	0.7547	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	T47D_BREAST	0.01	0.04	0.8386	FALSE	29	25	1	23	0	FALSE	ACH-000147
T47D_BREAST	MT-ND6--MT-TE	21	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2516	0.0479	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T47D_BREAST	1	1	0.2995	FALSE	499	1288	110	792	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ND4	3	72	MT-ND5	2705	chrM:14041:+	MT-ND4	5940	chrM:10887:+	INCL_NON_REF_SPLICE	YES	167	3286	0.31	0.02	0.0359	0.8625	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	T47D_BREAST	0.02	0.31	0.8984	FALSE	29	25	1	23	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	19	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2276	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.2276	FALSE	231	205	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	10	34	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	16946	0	0	1	0.1198	0.4073	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0	1	0.5271	FALSE	328	800	43	304	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	5	53	MT-ND4	2324	chrM:12083:+	MT-ATP8	5419	chrM:8406:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0599	0.6349	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.6948	FALSE	209	205	15	279	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	17	5	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	26232	640	0	0.03	0.2037	0.0599	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.03	0.2636	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	NRIP1--AF127936.7	18	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.2156	0.012	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	T47D_BREAST	0.95	1	0.2276	FALSE	292	1546	117	613	0	FALSE	ACH-000147
T47D_BREAST	RP11-208N14.4--DNAJC9	17	4	RP11-208N14.4	6020	chr3:186915553:-	DNAJC9	13637	chr10:75003687:-	INCL_NON_REF_SPLICE	YES	13	329	0.62	0.06	0.2037	0.0479	RP11-208N14.4->chr3:186914878-186925417:-,DNAJC9->DnaJ_heat_shock_protein_family_(Hsp40)_member_C9,Oncogene{Bushman},chr10:74943120-75008620:-	T47D_BREAST	0.06	0.62	0.2516	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	14	15	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	24817	0	0	1	0.1677	0.1797	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.3474	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	6	47	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1615	0	0.03	1	0.0719	0.563	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0.03	1	0.6349	FALSE	216	209	16	281	0	FALSE	ACH-000147
T47D_BREAST	MT-ND6--MT-TE	16	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.82	1	0.1917	0.0839	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T47D_BREAST	0.82	1	0.2756	FALSE	499	1288	110	792	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	14	12	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8697	137	0	0.16	0.1677	0.1438	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.16	0.3115	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	4	50	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	28	0	0.66	1	0.0479	0.599	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0.66	1	0.6469	FALSE	213	207	15	279	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	5	46	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	33	0	0.61	1	0.0599	0.5511	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.61	1	0.611	FALSE	344	821	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	8	31	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	25671	0	0	1	0.0958	0.3714	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.4672	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	5	43	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0599	0.5151	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.575	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	8	30	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.0958	0.3594	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.9	1	0.4552	FALSE	344	821	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	5	42	MT-ND5	2792	chrM:14128:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0599	0.5031	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.563	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	NBPF1--CROCC	8	30	NBPF1	1225	chr1:16939833:-	CROCC	44286	chr1:17250820:+	ONLY_REF_SPLICE	YES	84	3	0.31	0.93	0.0958	0.3594	NBPF1->chr1:16888814-16940057:-,neuroblastoma_breakpoint_family_member_1,CROCC->chr1:17066768-17299474:+,ciliary_rootlet_coiled-coil,_rootletin	T47D_BREAST	0.31	0.93	0.4552	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	49	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	6684	0	0.01	1	0.0359	0.587	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0.01	1	0.6229	FALSE	222	212	16	282	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ND4	3	49	MT-ND5	2718	chrM:14054:+	MT-ND4	6199	chrM:11146:+	INCL_NON_REF_SPLICE	YES	10	23932	0.84	0	0.0359	0.587	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	T47D_BREAST	0	0.84	0.6229	FALSE	47	27	1	24	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	7	32	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	2420	0	0.02	1	0.0839	0.3834	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.02	1	0.4673	FALSE	344	827	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ND4	3	48	MT-ND5	2518	chrM:13854:+	MT-ND4	6022	chrM:10969:+	INCL_NON_REF_SPLICE	YES	3842	12022	0.01	0	0.0359	0.575	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	T47D_BREAST	0	0.01	0.6109	FALSE	29	26	1	23	0	FALSE	ACH-000147
T47D_BREAST	C15orf57--CBX3	12	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	70	62	0.25	0.27	0.1438	0.1318	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	T47D_BREAST	0.25	0.27	0.2756	TRUE	267	562	48	632	0	FALSE	ACH-000147
T47D_BREAST	RP11-96H19.1--RP11-446N19.1	8	27	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.88	1	0.0958	0.3235	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	T47D_BREAST	0.88	1	0.4193	FALSE	407	2205	196	549	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	9	22	MT-ND5	2687	chrM:14023:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	871	18	0.03	0.63	0.1078	0.2636	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0.03	0.63	0.3714	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	9	20	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2708	0	0.01	1	0.1078	0.2396	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.01	1	0.3474	FALSE	344	827	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	12	7	MT-ND4	1311	chrM:11070:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	23935	0	0	1	0.1438	0.0839	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.2277	FALSE	231	205	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	7	26	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	25304	0	0	1	0.0839	0.3115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.3954	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	4	37	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	22244	0	0	1	0.0479	0.4433	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.4912	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	7	25	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	24928	0	0	1	0.0839	0.2995	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.3834	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	NBPF1--CROCC	9	17	NBPF1	1225	chr1:16939833:-	CROCC	45881	chr1:17256781:+	ONLY_REF_SPLICE	YES	84	38	0.24	0.41	0.1078	0.2037	NBPF1->chr1:16888814-16940057:-,neuroblastoma_breakpoint_family_member_1,CROCC->chr1:17066768-17299474:+,ciliary_rootlet_coiled-coil,_rootletin	T47D_BREAST	0.24	0.41	0.3115	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	LMF2--MTND2P28	13	0	LMF2	1878	chr22:50945258:-	MTND2P28	8780	chr1:565039:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1557	0	LMF2->chr22:50941376-50946135:-,lipase_maturation_factor_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	T47D_BREAST	1	1	0.1557	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	7	24	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	24953	0	0	1	0.0839	0.2875	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.3714	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	5	31	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	25298	0	0	1	0.0599	0.3714	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.4313	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	9	15	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	24839	0	0	1	0.1078	0.1797	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.2875	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	38	MT-ND4	2195	chrM:11954:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	8468	0	0	1	0.0359	0.4552	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.4911	FALSE	231	215	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	38	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	23397	0	0	1	0.0359	0.4552	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.4911	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ND4	12	1	MT-ND5	2509	chrM:13845:+	MT-ND4	7031	chrM:11978:+	INCL_NON_REF_SPLICE	NO	3860	213	0	0.06	0.1438	0.012	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	T47D_BREAST	0	0.06	0.1558	FALSE	45	28	1	23	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	12	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1438	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.1438	FALSE	230	198	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	7	20	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4	641	0.87	0.04	0.0839	0.2396	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0.04	0.87	0.3235	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	3	34	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	17381	0	0	1	0.0359	0.4073	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0	1	0.4432	FALSE	344	827	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	7	17	MT-ND5	2514	chrM:13850:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3833	137	0.01	0.15	0.0839	0.2037	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0.01	0.15	0.2876	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	VPS26A--FAM149B1	6	21	VPS26A	2919	chr10:70892803:+	FAM149B1	22480	chr10:74968455:+	INCL_NON_REF_SPLICE	YES	239	27	0.1	0.5	0.0719	0.2516	VPS26A->VPS26_retromer_complex_component_A,chr10:70883268-70932617:+,FAM149B1->chr10:74927924-75004262:+,family_with_sequence_similarity_149_member_B1	T47D_BREAST	0.1	0.5	0.3235	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	10	4	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	23974	1707	0	0.01	0.1198	0.0479	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.01	0.1677	FALSE	231	205	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	3	32	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.0359	0.3834	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.9	1	0.4193	FALSE	344	821	44	306	0	FALSE	ACH-000147
T47D_BREAST	CNNM2--RP11-208N14.4	10	3	CNNM2	2809	chr10:104679858:+	RP11-208N14.4	32107	chr3:186916490:-	ONLY_REF_SPLICE	YES	27	13	0.33	0.5	0.1198	0.0359	CNNM2->chr10:104678050-104849978:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_2,RP11-208N14.4->chr3:186914878-186925417:-	T47D_BREAST	0.33	0.5	0.1557	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	8	11	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	27451	880	0	0.02	0.0958	0.1318	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.02	0.2276	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	31	MT-ND4	1774	chrM:11533:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	25735	0	0	1	0.0359	0.3714	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.4073	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	31	MT-ND4	1776	chrM:11535:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	NO	25606	0	0	1	0.0359	0.3714	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.4073	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	5	23	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9	137	0.76	0.17	0.0599	0.2755	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0.17	0.76	0.3354	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	3	31	MT-ND5	2642	chrM:13978:+	MT-ATP8	5814	chrM:8367:+	INCL_NON_REF_SPLICE	YES	2416	0	0.01	1	0.0359	0.3714	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0.01	1	0.4073	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	RP11-114H23.1--RP11-114H23.2	7	15	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	6	0	0.79	1	0.0839	0.1797	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	T47D_BREAST	0.79	1	0.2636	FALSE	81	155	12	160	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ND4	6	18	MT-ND5	2794	chrM:14130:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	0	16502	1	0	0.0719	0.2156	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	T47D_BREAST	0	1	0.2875	FALSE	47	27	1	24	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	5	21	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	25735	18	0	0.59	0.0599	0.2516	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.59	0.3115	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	7	12	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	23410	2096	0	0.01	0.0839	0.1438	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.01	0.2277	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	3	28	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	122	0	0.2	1	0.0359	0.3354	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.2	1	0.3713	FALSE	344	826	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	6	15	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	24829	0	0	1	0.0719	0.1797	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.2516	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	5	19	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	23759	942	0	0.02	0.0599	0.2276	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.02	0.2875	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	8	7	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	25112	4	0	0.79	0.0958	0.0839	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.79	0.1797	FALSE	231	216	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	5	19	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1644	0	0.01	1	0.0599	0.2276	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.01	1	0.2875	FALSE	344	827	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	4	23	MT-ND5	2455	chrM:13791:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	3129	0	0.01	1	0.0479	0.2755	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0.01	1	0.3234	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	7	10	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	24256	2096	0	0.01	0.0839	0.1198	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.01	0.2037	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	7	10	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	25316	137	0	0.11	0.0839	0.1198	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.11	0.2037	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	4	22	MT-ND5	2247	chrM:13583:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	5273	0	0	1	0.0479	0.2636	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.3115	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	MT-ND6--MT-TE	4	22	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0.2636	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T47D_BREAST	1	1	0.3115	FALSE	499	1288	110	792	0	FALSE	ACH-000147
T47D_BREAST	FAM149B1--RTP1	9	1	FAM149B1	19586	chr10:75003687:+	RTP1	23441	chr3:186915553:+	INCL_NON_REF_SPLICE	YES	1	8	0.91	0.56	0.1078	0.012	FAM149B1->chr10:74927924-75004262:+,family_with_sequence_similarity_149_member_B1,RTP1->chr3:186915274-186919253:+,receptor_(chemosensory)_transporter_protein_1	T47D_BREAST	0.56	0.91	0.1198	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	25	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20965	137	0	0.17	0.0359	0.2995	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.17	0.3354	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	4	21	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	20	0	0.56	1	0.0479	0.2516	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.56	1	0.2995	FALSE	344	821	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	9	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1078	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.1078	FALSE	231	204	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	9	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1078	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.1078	FALSE	231	205	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	4	20	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	19224	0	0	1	0.0479	0.2396	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0	1	0.2875	FALSE	343	822	44	305	0	FALSE	ACH-000147
T47D_BREAST	PDE6B--PPP2R2D	9	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1078	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	T47D_BREAST	1	1	0.1078	TRUE	7	65	3	22	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	5	15	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	24817	0	0	1	0.0599	0.1797	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.2396	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	4	19	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	271	0	0.08	1	0.0479	0.2276	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.08	1	0.2755	FALSE	344	827	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	4	19	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	136	0	0.14	1	0.0479	0.2276	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.14	1	0.2755	FALSE	344	826	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	3	23	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9	18	0.74	0.59	0.0359	0.2755	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0.59	0.74	0.3114	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	4	19	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	3518	0	0.01	1	0.0479	0.2276	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0.01	1	0.2755	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	NBPF1--CROCC	3	23	NBPF1	1225	chr1:16939833:-	CROCC	45441	chr1:17256341:+	ONLY_REF_SPLICE	YES	84	12	0.24	0.68	0.0359	0.2755	NBPF1->chr1:16888814-16940057:-,neuroblastoma_breakpoint_family_member_1,CROCC->chr1:17066768-17299474:+,ciliary_rootlet_coiled-coil,_rootletin	T47D_BREAST	0.24	0.68	0.3114	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	KIAA0232--RP11-325I22.2	7	6	KIAA0232	3551	chr4:6806333:+	RP11-325I22.2	25895	chr5:1364806:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0839	0.0719	KIAA0232->KIAA0232,chr4:6783102-6885897:+,RP11-325I22.2->chr5:1363697-1380182:-	T47D_BREAST	0.93	1	0.1558	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	NBPF1--CROCC	1	30	NBPF1	1225	chr1:16939833:-	CROCC	43150	chr1:17249158:+	ONLY_REF_SPLICE	YES	84	1	0.27	0.97	0.012	0.3594	NBPF1->chr1:16888814-16940057:-,neuroblastoma_breakpoint_family_member_1,CROCC->chr1:17066768-17299474:+,ciliary_rootlet_coiled-coil,_rootletin	T47D_BREAST	0.27	0.97	0.3714	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	4	17	MT-ND4	1500	chrM:11259:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	24987	0	0	1	0.0479	0.2037	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.2516	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	4	17	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	25226	1707	0	0.01	0.0479	0.2037	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.01	0.2516	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	21	MT-ND4	1779	chrM:11538:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	25540	137	0	0.15	0.0359	0.2516	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.15	0.2875	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	POLR2A--MT-CO3	8	1	POLR2A	16214	chr17:7416562:+	MT-CO3	20595	chrM:9216:+	INCL_NON_REF_SPLICE	YES	663	0	0.01	1	0.0958	0.012	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	T47D_BREAST	0.01	1	0.1078	FALSE	0	0	0	5	0	FALSE	ACH-000147
T47D_BREAST	RP11-96H19.1--RP11-446N19.1	1	29	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	1	0.91	0.97	0.012	0.3474	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	T47D_BREAST	0.91	0.97	0.3594	FALSE	467	2173	244	435	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	4	16	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	25735	1006	0	0.02	0.0479	0.1917	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.02	0.2396	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	NBPF1--CROCC	3	20	NBPF1	1225	chr1:16939833:-	CROCC	45719	chr1:17256619:+	ONLY_REF_SPLICE	YES	84	42	0.21	0.35	0.0359	0.2396	NBPF1->chr1:16888814-16940057:-,neuroblastoma_breakpoint_family_member_1,CROCC->chr1:17066768-17299474:+,ciliary_rootlet_coiled-coil,_rootletin	T47D_BREAST	0.21	0.35	0.2755	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	19	MT-ND4	1913	chrM:11672:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	23797	942	0	0.02	0.0359	0.2276	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.02	0.2635	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	4	15	MT-ND4	1645	chrM:11404:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	25771	137	0	0.12	0.0479	0.1797	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.12	0.2276	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	4	15	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	27719	137	0	0.12	0.0479	0.1797	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.12	0.2276	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	3	19	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	136	0	0.14	1	0.0359	0.2276	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.14	1	0.2635	FALSE	344	826	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	3	19	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	254	0	0.08	1	0.0359	0.2276	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.08	1	0.2635	FALSE	344	827	44	306	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	3	19	MT-ND5	2339	chrM:13675:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	3339	0	0.01	1	0.0359	0.2276	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0.01	1	0.2635	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	3	19	MT-ND5	2247	chrM:13583:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	5273	0	0	1	0.0359	0.2276	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.2635	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	5	10	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	25387	11	0	0.58	0.0599	0.1198	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.58	0.1797	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	4	14	MT-ND4	1523	chrM:11282:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	27545	0	0	1	0.0479	0.1677	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.2156	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	4	14	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	25390	0	0	1	0.0479	0.1677	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.2156	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND6--MT-TE	3	17	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.8	1	0.0359	0.2037	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T47D_BREAST	0.8	1	0.2396	FALSE	499	1288	110	792	0	FALSE	ACH-000147
T47D_BREAST	MT-ND6--MT-TE	3	17	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	5	0	0.8	1	0.0359	0.2037	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T47D_BREAST	0.8	1	0.2396	FALSE	499	1288	110	792	0	FALSE	ACH-000147
T47D_BREAST	MT-ND6--MT-TE	6	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0.0599	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T47D_BREAST	1	1	0.1318	FALSE	499	1288	110	792	0	FALSE	ACH-000147
T47D_BREAST	RP11-123O10.4--GRIP1	7	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0839	0.012	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	T47D_BREAST	1	1	0.0959	FALSE	416	2512	207	587	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	7	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.0839	FALSE	230	193	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	3	16	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	6059	0	0	1	0.0359	0.1917	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.2276	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ND4	4	12	MT-ND5	1785	chrM:13121:+	MT-ND4	6139	chrM:11086:+	INCL_NON_REF_SPLICE	YES	4235	21386	0	0	0.0479	0.1438	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	T47D_BREAST	0	0	0.1917	FALSE	47	28	1	23	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	15	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	25038	0	0	1	0.0359	0.1797	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.2156	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	15	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	25316	0	0	1	0.0359	0.1797	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.2156	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	3	15	MT-ND5	2362	chrM:13698:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	3272	1309	0.01	0.01	0.0359	0.1797	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0.01	0.01	0.2156	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	3	15	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	4198	1309	0	0.01	0.0359	0.1797	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0.01	0.2156	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	NRIP1--AF127936.7	6	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.33	1	0.0719	0.0359	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	T47D_BREAST	0.33	1	0.1078	FALSE	125	705	46	456	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	14	MT-ND4	1446	chrM:11205:+	MT-ATP8	5430	chrM:8417:+	INCL_NON_REF_SPLICE	YES	25279	0	0	1	0.0359	0.1677	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.2036	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND6--MT-TE	4	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0.1198	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T47D_BREAST	1	1	0.1677	FALSE	499	1288	110	792	0	FALSE	ACH-000147
T47D_BREAST	RP11-680G10.1--GSE1	6	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	209	1	0.04	0.0719	0.024	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	T47D_BREAST	0.04	1	0.0959	TRUE	465	1949	224	605	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	4	8	MT-ND5	1609	chrM:12945:+	MT-ATP8	5822	chrM:8375:+	INCL_NON_REF_SPLICE	YES	5865	0	0	1	0.0479	0.0958	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.1437	FALSE	42	36	7	104	0	FALSE	ACH-000147
T47D_BREAST	MT-ND5--MT-ATP8	3	12	MT-ND5	2083	chrM:13419:+	MT-ATP8	5903	chrM:8456:+	INCL_NON_REF_SPLICE	YES	8453	0	0	1	0.0359	0.1438	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.1797	FALSE	43	37	8	105	0	FALSE	ACH-000147
T47D_BREAST	C15orf57--CBX3	3	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	69	62	0.16	0.17	0.0359	0.1198	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	T47D_BREAST	0.16	0.17	0.1557	TRUE	267	562	48	632	0	FALSE	ACH-000147
T47D_BREAST	MT-ND6--MT-TE	3	10	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0.1198	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T47D_BREAST	1	1	0.1557	FALSE	499	1288	110	792	0	FALSE	ACH-000147
T47D_BREAST	RP11-114H23.1--RP11-114H23.2	3	10	RP11-114H23.1	1242	chr12:76377554:-	RP11-114H23.2	12403	chr12:76088755:-	INCL_NON_REF_SPLICE	YES	8	0	0.62	1	0.0359	0.1198	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	T47D_BREAST	0.62	1	0.1557	FALSE	81	155	12	160	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ND4L	3	9	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	280	0	0.04	1	0.0359	0.1078	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	T47D_BREAST	0.04	1	0.1437	FALSE	344	827	44	306	0	FALSE	ACH-000147
T47D_BREAST	KIAA0232--CLPTM1L	5	0	KIAA0232	2467	chr4:6784568:+	CLPTM1L	23961	chr5:1344566:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0599	0	KIAA0232->KIAA0232,chr4:6783102-6885897:+,CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-	T47D_BREAST	1	1	0.0599	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1003	chrM:10762:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0599	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.0599	FALSE	230	189	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0599	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.0599	FALSE	230	193	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	7	MT-ND4	1572	chrM:11331:+	MT-ATP8	5534	chrM:8521:+	INCL_NON_REF_SPLICE	YES	26175	2110	0	0	0.0359	0.0839	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	0	0.1198	FALSE	231	217	16	283	0	FALSE	ACH-000147
T47D_BREAST	NRIP1--AF127936.7	4	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	34	0	0.17	1	0.0479	0.0359	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	T47D_BREAST	0.17	1	0.0838	FALSE	164	806	69	479	0	FALSE	ACH-000147
T47D_BREAST	MECOM--TTC18	3	5	MECOM	10944	chr3:168861486:-	TTC18	59519	chr10:75035356:-	ONLY_REF_SPLICE	YES	13	0	0.38	1	0.0359	0.0599	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,TTC18->chr10:75013517-75118617:-	T47D_BREAST	0.38	1	0.0958	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	MT-ND5--MT-ND4	3	5	MT-ND5	1805	chrM:13141:+	MT-ND4	6581	chrM:11528:+	INCL_NON_REF_SPLICE	YES	5151	15544	0	0	0.0359	0.0599	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	T47D_BREAST	0	0	0.0958	FALSE	47	28	1	25	0	FALSE	ACH-000147
T47D_BREAST	KANSL1--ARL17B	1	12	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	62	176	0.17	0.07	0.012	0.1438	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	T47D_BREAST	0.07	0.17	0.1558	TRUE	105	90	7	93	0	FALSE	ACH-000147
T47D_BREAST	MECOM--TTC18	4	0	MECOM	10944	chr3:168861486:-	TTC18	63877	chr10:75016174:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0479	0	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,TTC18->chr10:75013517-75118617:-	T47D_BREAST	1	1	0.0479	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1017	chrM:10776:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.0479	FALSE	230	190	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.0479	FALSE	231	204	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.0479	FALSE	231	204	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	T47D_BREAST	1	1	0.0479	FALSE	499	1288	110	792	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1285	chrM:11044:+	MT-ATP8	5399	chrM:8386:+	INCL_NON_REF_SPLICE	YES	20564	0	0	1	0.0359	0.024	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	0	1	0.0599	FALSE	231	205	14	283	0	FALSE	ACH-000147
T47D_BREAST	RERG--CBFB	3	1	RERG	3656	chr12:15490311:-	CBFB	19844	chr16:67100585:+	ONLY_REF_SPLICE	YES	11	77	0.27	0.05	0.0359	0.012	RERG->RAS_like_estrogen_regulated_growth_inhibitor,chr12:15260717-15501609:-,CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit	T47D_BREAST	0.05	0.27	0.0479	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	VPS26A--FAM149B1	2	5	VPS26A	2919	chr10:70892803:+	FAM149B1	24758	chr10:74987818:+	ONLY_REF_SPLICE	YES	239	47	0.03	0.13	0.024	0.0599	VPS26A->VPS26_retromer_complex_component_A,chr10:70883268-70932617:+,FAM149B1->chr10:74927924-75004262:+,family_with_sequence_similarity_149_member_B1	T47D_BREAST	0.03	0.13	0.0839	TRUE	0	0	0	1	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.0359	FALSE	230	193	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.0359	FALSE	231	204	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1164	chrM:10923:+	MT-ATP8	5389	chrM:8376:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.0359	FALSE	230	193	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.0359	FALSE	231	204	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1279	chrM:11038:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.0359	FALSE	231	205	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.0359	FALSE	231	205	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5571	chrM:8558:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.0359	FALSE	231	204	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.0359	FALSE	230	197	14	283	0	FALSE	ACH-000147
T47D_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1081	chrM:10840:+	MT-ATP8	5476	chrM:8463:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	T47D_BREAST	1	1	0.0359	FALSE	230	193	14	283	0	FALSE	ACH-000147
T47D_BREAST	POLR2A--MT-CO3	3	0	POLR2A	16612	chr17:7416960:+	MT-CO3	20945	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	T47D_BREAST	1	1	0.0359	FALSE	0	0	0	5	0	FALSE	ACH-000147
T47D_BREAST	POLR2A--MT-CO3	3	0	POLR2A	16528	chr17:7416876:+	MT-CO3	20945	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	T47D_BREAST	1	1	0.0359	FALSE	0	0	0	5	0	FALSE	ACH-000147
T47D_BREAST	SYK--ROR2	3	0	SYK	4964	chr9:93607876:+	ROR2	24168	chr9:94686210:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0	PROTCLUST,SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase,ROR2->Oncogene{Bushman},chr9:94325373-94712444:-,receptor_tyrosine_kinase_like_orphan_receptor_2	T47D_BREAST	1	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	RP11-680G10.1--GSE1	2	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	51	1	0.07	0.024	0.024	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	T47D_BREAST	0.07	1	0.048	TRUE	458	1351	185	561	0	FALSE	ACH-000147
T47D_BREAST	RP11-644C3.1--RP11-71G7.1	1	5	RP11-644C3.1	1138	chr3:176585489:-	RP11-71G7.1	11892	chr3:176344134:-	ONLY_REF_SPLICE	YES	1	2	0.86	0.75	0.012	0.0599	NEIGHBORS[8409],RP11-644C3.1->chr3:176361729-176585626:-,RP11-71G7.1->chr3:176321931-176353320:-	T47D_BREAST	0.75	0.86	0.0719	FALSE	0	0	0	1	0	FALSE	ACH-000147
T47D_BREAST	SEMA3E--CCDC129	2	1	SEMA3E	1583	chr7:83277744:-	CCDC129	34883	chr7:31594089:+	ONLY_REF_SPLICE	YES	7	1	0.3	0.75	0.024	0.012	SEMA3E->chr7:82993222-83278326:-,semaphorin_3E,CCDC129->chr7:31553704-31698334:+,coiled-coil_domain_containing_129	T47D_BREAST	0.3	0.75	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	COPA--PHF20	2	0	COPA	1270	chr1:160312921:-	PHF20	34600	chr20:34389413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	T47D_BREAST	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	LINC01036--LINC01037	2	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	T47D_BREAST	1	1	0.024	FALSE	0	26	0	50	0	FALSE	ACH-000147
T47D_BREAST	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	18197	chr21:16225752:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	T47D_BREAST	1	1	0.024	FALSE	1	3	0	3	0	FALSE	ACH-000147
T47D_BREAST	NSUN5--CSE1L	2	0	NSUN5	1437	chr7:72722428:-	CSE1L	31186	chr20:47712886:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	NSUN5->NOP2/Sun_RNA_methyltransferase_family_member_5,chr7:72716514-72722864:-,CSE1L->Oncogene{Bushman},chr20:47662849-47713489:+,chromosome_segregation_1_like	T47D_BREAST	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000147
T47D_BREAST	RP11-644C3.1--RP11-71G7.1	1	4	RP11-644C3.1	1138	chr3:176585489:-	RP11-71G7.1	12960	chr3:176322474:-	ONLY_REF_SPLICE	YES	1	2	0.83	0.71	0.012	0.0479	NEIGHBORS[8409],RP11-644C3.1->chr3:176361729-176585626:-,RP11-71G7.1->chr3:176321931-176353320:-	T47D_BREAST	0.71	0.83	0.0599	FALSE	0	0	0	1	0	FALSE	ACH-000147
T47D_BREAST	RP11-644C3.1--RP11-71G7.1	1	4	RP11-644C3.1	2198	chr3:176571497:-	RP11-71G7.1	12960	chr3:176322474:-	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.012	0.0479	NEIGHBORS[8409],RP11-644C3.1->chr3:176361729-176585626:-,RP11-71G7.1->chr3:176321931-176353320:-	T47D_BREAST	0.71	1	0.0599	FALSE	0	7	0	2	0	FALSE	ACH-000147
T47D_BREAST	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	T47D_BREAST	1	1	0.024	TRUE	62	24	1	171	0	FALSE	ACH-000147
T47D_BREAST	AGPAT3--PRMT2	1	1	AGPAT3	23693	chr21:45398002:+	PRMT2	36315	chr21:48063447:+	ONLY_REF_SPLICE	YES	84	228	0.02	0.01	0.012	0.012	AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+,PRMT2->chr21:48055079-48085036:+,protein_arginine_methyltransferase_2	T47D_BREAST	0.01	0.02	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000147
T47D_BREAST	FARS2--RP3-380B8.4	1	1	FARS2	9557	chr6:5613553:+	RP3-380B8.4	14405	chr6:5852296:+	ONLY_REF_SPLICE	YES	39	0	0.05	1	0.012	0.012	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	T47D_BREAST	0.05	1	0.024	FALSE	1	11	1	4	0	FALSE	ACH-000147
T47D_BREAST	TRPS1--EIF3H	1	1	TRPS1	4117	chr8:116680772:-	EIF3H	35902	chr8:117701379:-	ONLY_REF_SPLICE	YES	455	2013	0	0	0.012	0.012	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	T47D_BREAST	0	0	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000147
T47D_BREAST	ZNF736--CHMP1A	1	1	ZNF736	8361	chr7:63797360:+	CHMP1A	24290	chr16:89713739:-	ONLY_REF_SPLICE	YES	67	748	0.03	0	0.012	0.012	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adipose_Tissue=[count:2=pct:0.7],Breast=[count:2=pct:1.8],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=25;pct=0.29%;dist=Thyroid=4,Cells_-_Transformed_fibroblasts=3,Breast_-_Mammary_Tissue=2,Esophagus_-_Mucosa=2,Ovary=1,Pancreas=1,Lung=1,Vagina=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Colon_-_Sigmoid=1,Testis=1,Colon_-_Transverse=1},ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	T47D_BREAST	0	0.03	0.024	FALSE	10	14	2	10	0	FALSE	ACH-000147
T47D_BREAST	ZNF736--FAM120B	1	1	ZNF736	8361	chr7:63797360:+	FAM120B	32723	chr6:170704575:+	ONLY_REF_SPLICE	YES	67	43	0.03	0.04	0.012	0.012	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Lymphoid=1,Lung=1},ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	T47D_BREAST	0.03	0.04	0.024	TRUE	0	3	0	3	3	TRUE	ACH-000147
JHH2_LIVER	IQCE--EIF3B	130	76	IQCE	8546	chr7:2618160:+	EIF3B	51872	chr7:2418324:+	ONLY_REF_SPLICE	YES	53	537	0.8	0.28	1.6642	0.9729	{Klijn_CCL:Liver=1,Colo-Rectal=1},IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	JHH2_LIVER	0.28	0.8	2.6371	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	ARMC10--OSR1	114	0	ARMC10	12353	chr7:102740016:+	OSR1	19766	chr2:19554191:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4594	0	GTEx_FI:{Blood_Vessel=[count:3=pct:0.8],Brain=[count:3=pct:0.5],Thyroid=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Esophagus=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Ovary=[count:1=pct:1.9]},ARMC10->armadillo_repeat_containing_10,chr7:102715328-102740205:+,OSR1->chr2:19551246-19558414:-,odd-skipped_related_transciption_factor_1	JHH2_LIVER	1	1	1.4594	TRUE	15	4	0	8	0	FALSE	ACH-000577
JHH2_LIVER	ARHGAP5--NUBPL	76	46	ARHGAP5	9216	chr14:32586493:+	NUBPL	43598	chr14:32315677:+	ONLY_REF_SPLICE	YES	193	21	0.39	0.85	0.9729	0.5889	{Klijn_CCL:Liver=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	JHH2_LIVER	0.39	0.85	1.5618	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	MT-TA--MT-TN	66	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8449	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH2_LIVER	1	1	0.8449	FALSE	369	2501	205	193	0	FALSE	ACH-000577
JHH2_LIVER	TIMM23B--LINC00843	54	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6913	0.1664	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHH2_LIVER	1	1	0.8577	TRUE	508	994	45	981	0	FALSE	ACH-000577
JHH2_LIVER	BCAR3--RP11-488P3.1	45	16	BCAR3	11906	chr1:94107860:-	RP11-488P3.1	30475	chr1:94219902:-	ONLY_REF_SPLICE	YES	63	0	0.49	1	0.5761	0.2048	NEIGHBORS_OVERLAP:-:-:[22520],BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,RP11-488P3.1->chr1:94218480-94241000:-	JHH2_LIVER	0.49	1	0.7809	FALSE	0	0	0	3	0	FALSE	ACH-000577
JHH2_LIVER	OR51S1--TP53I11	49	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6273	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	JHH2_LIVER	1	1	0.6273	TRUE	402	216	10	229	0	FALSE	ACH-000577
JHH2_LIVER	ARHGEF2--SMG5	36	25	ARHGEF2	28055	chr1:155921710:-	SMG5	45912	chr1:156233361:-	ONLY_REF_SPLICE	YES	147	143	0.29	0.3	0.4609	0.32	ARHGEF2->Oncogene{Bushman},Rho/Rac_guanine_nucleotide_exchange_factor_2,chr1:155916630-155976861:-,SMG5->SMG5_nonsense_mediated_mRNA_decay_factor,chr1:156219015-156252620:-	JHH2_LIVER	0.29	0.3	0.7809	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	LPP--RP11-430L16.1	31	11	LPP	8828	chr3:188059507:+	RP11-430L16.1	55201	chr3:187864354:+	ONLY_REF_SPLICE	YES	13	0	0.76	1	0.3969	0.1408	LOCAL_REARRANGEMENT:+:[6264],LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,RP11-430L16.1->chr3:187824884-187864808:+	JHH2_LIVER	0.76	1	0.5377	TRUE	0	1	0	1	1	TRUE	ACH-000577
JHH2_LIVER	TIMM23--RP11-464F9.1	32	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	254	1	0.12	0.97	0.4097	0.0384	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JHH2_LIVER	0.12	0.97	0.4481	TRUE	519	3926	326	965	0	FALSE	ACH-000577
JHH2_LIVER	MT-TA--MT-TC	31	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3969	0.0768	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHH2_LIVER	1	1	0.4737	FALSE	462	80	0	856	0	FALSE	ACH-000577
JHH2_LIVER	PTPN1--CYP1B1	25	7	PTPN1	1237	chr20:49127127:+	CYP1B1	17466	chr2:38302532:-	ONLY_REF_SPLICE	YES	106	229	0.23	0.12	0.32	0.0896	PTPN1->chr20:49126891-49201299:+,protein_tyrosine_phosphatase,_non-receptor_type_1,CYP1B1->chr2:38294116-38337044:-,cytochrome_P450_family_1_subfamily_B_member_1	JHH2_LIVER	0.12	0.23	0.4096	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	SERPINE1--MT-ND4	25	2	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	9397	11899	0	0	0.32	0.0256	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	JHH2_LIVER	0	0	0.3456	FALSE	1	0	0	29	0	FALSE	ACH-000577
JHH2_LIVER	RP11-680G10.1--GSE1	21	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	17	1	0.61	0.2688	0.0768	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHH2_LIVER	0.61	1	0.3456	TRUE	465	1949	224	605	0	FALSE	ACH-000577
JHH2_LIVER	RP11-680G10.1--GSE1	20	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.256	0.1152	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHH2_LIVER	0.97	1	0.3712	TRUE	458	1351	185	561	0	FALSE	ACH-000577
JHH2_LIVER	IQCE--EIF3B	1	77	IQCE	10738	chr7:2621711:+	EIF3B	51872	chr7:2418324:+	ONLY_REF_SPLICE	YES	59	537	0.57	0.13	0.0128	0.9857	{Klijn_CCL:Liver=1,Colo-Rectal=1},IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	JHH2_LIVER	0.13	0.57	0.9985	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	MT-ATP6--MT-CO2	18	1	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	44	9	0.3	0.68	0.2304	0.0128	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHH2_LIVER	0.3	0.68	0.2432	FALSE	59	21	0	114	0	FALSE	ACH-000577
JHH2_LIVER	MT-TA--MT-TN	8	41	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1024	0.5249	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH2_LIVER	1	1	0.6273	FALSE	369	2501	205	193	0	FALSE	ACH-000577
JHH2_LIVER	MT-TA--MT-TN	7	45	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0896	0.5761	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH2_LIVER	1	1	0.6657	FALSE	369	2501	205	193	0	FALSE	ACH-000577
JHH2_LIVER	TUBB--SERPINE1	18	0	TUBB	3372	chr6:30690359:+	SERPINE1	14122	chr7:100777024:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2304	0	TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	JHH2_LIVER	1	1	0.2304	TRUE	0	0	0	2	0	TRUE	ACH-000577
JHH2_LIVER	PTPN1--CYP1B1	16	3	PTPN1	1237	chr20:49127127:+	CYP1B1	20340	chr2:38298453:-	ONLY_REF_SPLICE	YES	106	359	0.15	0.05	0.2048	0.0384	PTPN1->chr20:49126891-49201299:+,protein_tyrosine_phosphatase,_non-receptor_type_1,CYP1B1->chr2:38294116-38337044:-,cytochrome_P450_family_1_subfamily_B_member_1	JHH2_LIVER	0.05	0.15	0.2432	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	MT-TA--MT-TN	13	14	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1664	0.1792	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH2_LIVER	1	1	0.3456	FALSE	369	2501	205	193	0	FALSE	ACH-000577
JHH2_LIVER	IQCE--EIF3B	3	52	IQCE	8375	chr7:2617989:+	EIF3B	51872	chr7:2418324:+	ONLY_REF_SPLICE	YES	53	537	0.51	0.09	0.0384	0.6657	{Klijn_CCL:Liver=1,Colo-Rectal=1},IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	JHH2_LIVER	0.09	0.51	0.7041	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	MT-TA--MT-TN	5	33	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0.4225	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH2_LIVER	1	1	0.4865	FALSE	369	2501	205	193	0	FALSE	ACH-000577
JHH2_LIVER	MT-TA--MT-TN	4	32	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0512	0.4097	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH2_LIVER	1	1	0.4609	FALSE	369	2501	205	193	0	FALSE	ACH-000577
JHH2_LIVER	C15orf57--CBX3	10	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	31	28	0.35	0.38	0.128	0.0896	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JHH2_LIVER	0.35	0.38	0.2176	TRUE	267	562	48	632	0	FALSE	ACH-000577
JHH2_LIVER	MT-TA--MT-TN	6	17	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0768	0.2176	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH2_LIVER	1	1	0.2944	FALSE	369	2501	205	193	0	FALSE	ACH-000577
JHH2_LIVER	ZFAND3--GAB2	9	2	ZFAND3	1518	chr6:37787792:+	GAB2	22323	chr11:77991947:-	ONLY_REF_SPLICE	YES	21	0	0.34	1	0.1152	0.0256	ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	JHH2_LIVER	0.34	1	0.1408	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3114	0	0	1	0.1152	0.0128	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH2_LIVER	0	1	0.128	FALSE	13	9	0	364	0	FALSE	ACH-000577
JHH2_LIVER	ARHGAP5--NUBPL	4	19	ARHGAP5	8068	chr14:32563592:+	NUBPL	43598	chr14:32315677:+	ONLY_REF_SPLICE	YES	216	21	0.1	0.52	0.0512	0.2432	{Klijn_CCL:Liver=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	JHH2_LIVER	0.1	0.52	0.2944	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	RP11-319G9.5--WWOX	8	2	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	3	1	0.77	0.1024	0.0256	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	JHH2_LIVER	0.77	1	0.128	FALSE	154	425	28	76	0	FALSE	ACH-000577
JHH2_LIVER	KLHL20--SRGAP2	8	1	KLHL20	3700	chr1:173703425:+	SRGAP2	39669	chr1:206628224:+	ONLY_REF_SPLICE	YES	13	23	0.41	0.28	0.1024	0.0128	{Klijn_CCL:Liver=1},KLHL20->chr1:173684080-173755840:+,kelch_like_family_member_20,SRGAP2->SLIT-ROBO_Rho_GTPase_activating_protein_2,chr1:206516200-206637783:+	JHH2_LIVER	0.28	0.41	0.1152	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	HSPBP1--GRK5	8	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1024	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	JHH2_LIVER	1	1	0.1024	TRUE	1	39	0	134	39	FALSE	ACH-000577
JHH2_LIVER	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1024	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH2_LIVER	1	1	0.1024	FALSE	230	198	14	283	0	FALSE	ACH-000577
JHH2_LIVER	MT-ND4--MT-ATP8	8	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1024	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH2_LIVER	1	1	0.1024	FALSE	231	205	14	283	0	FALSE	ACH-000577
JHH2_LIVER	MT-TA--MT-TN	8	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1024	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH2_LIVER	1	1	0.1024	FALSE	369	2501	205	193	0	FALSE	ACH-000577
JHH2_LIVER	PHC2--YARS	8	0	PHC2	9417	chr1:33832717:-	YARS	42366	chr1:33241692:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1024	0	PHC2->chr1:33789224-33896653:-,polyhomeotic_homolog_2,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	JHH2_LIVER	1	1	0.1024	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	ARHGAP5--NUBPL	2	22	ARHGAP5	9216	chr14:32586493:+	NUBPL	44791	chr14:32319325:+	ONLY_REF_SPLICE	YES	193	40	0.11	0.38	0.0256	0.2816	{Klijn_CCL:Liver=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	JHH2_LIVER	0.11	0.38	0.3072	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	MT-ATP6--MT-CO1	7	2	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2986	19795	0	0	0.0896	0.0256	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH2_LIVER	0	0	0.1152	FALSE	183	104	9	328	0	FALSE	ACH-000577
JHH2_LIVER	RP11-640M9.1--SEC22B	7	2	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	YES	31	255	0.23	0.03	0.0896	0.0256	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	JHH2_LIVER	0.03	0.23	0.1152	TRUE	20	16	6	14	0	FALSE	ACH-000577
JHH2_LIVER	MT-ND4--MT-ATP8	7	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0896	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH2_LIVER	1	1	0.0896	FALSE	230	193	14	283	0	FALSE	ACH-000577
JHH2_LIVER	MT-TA--MT-TN	7	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0896	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH2_LIVER	1	1	0.0896	FALSE	369	2501	205	193	0	FALSE	ACH-000577
JHH2_LIVER	CFB--AIF1	6	2	CFB	15453	chr6:31919381:+	AIF1	19271	chr6:31583298:+	ONLY_REF_SPLICE	YES	81	0	0.09	1	0.0768	0.0256	CFB->chr6:31895475-31919825:+,chr6:31895475-31919861:+,complement_factor_B,AIF1->allograft_inflammatory_factor_1,chr6:31582961-31584798:+	JHH2_LIVER	0.09	1	0.1024	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	MAF--RP11-679B19.2	5	6	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0.0768	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	JHH2_LIVER	1	1	0.1408	TRUE	48	25	3	38	0	FALSE	ACH-000577
JHH2_LIVER	NRIP1--AF127936.7	6	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0768	0.0128	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHH2_LIVER	1	1	0.0896	FALSE	292	1546	117	613	0	FALSE	ACH-000577
JHH2_LIVER	IQCE--EIF3B	2	16	IQCE	7261	chr7:2613122:+	EIF3B	51872	chr7:2418324:+	ONLY_REF_SPLICE	YES	104	537	0.15	0.03	0.0256	0.2048	{Klijn_CCL:Liver=1,Colo-Rectal=1},IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	JHH2_LIVER	0.03	0.15	0.2304	TRUE	0	0	0	1	0	FALSE	ACH-000577
JHH2_LIVER	MT-TA--MT-TN	6	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0768	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH2_LIVER	1	1	0.0768	FALSE	369	2501	205	193	0	FALSE	ACH-000577
JHH2_LIVER	MT-ATP6--MT-CO2	5	1	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	44	6	0.12	0.5	0.064	0.0128	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHH2_LIVER	0.12	0.5	0.0768	FALSE	59	21	0	114	0	FALSE	ACH-000577
JHH2_LIVER	MT-ND4--MT-ATP8	5	1	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3457	33	0	0.15	0.064	0.0128	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH2_LIVER	0	0.15	0.0768	FALSE	218	210	16	281	0	FALSE	ACH-000577
JHH2_LIVER	MT-ND4--MT-ATP8	5	1	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1811	33	0	0.15	0.064	0.0128	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH2_LIVER	0	0.15	0.0768	FALSE	216	209	16	281	0	FALSE	ACH-000577
JHH2_LIVER	MT-ATP6--MT-CO1	5	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH2_LIVER	1	1	0.064	FALSE	183	104	9	328	0	FALSE	ACH-000577
JHH2_LIVER	MT-ND4--MT-ATP8	5	0	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH2_LIVER	1	1	0.064	FALSE	230	193	14	283	0	FALSE	ACH-000577
JHH2_LIVER	RP11-640M9.1--SEC22B	4	3	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	25754	chr1:145103908:+	ONLY_REF_SPLICE	YES	31	288	0.18	0.02	0.0512	0.0384	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	JHH2_LIVER	0.02	0.18	0.0896	TRUE	14	18	7	11	0	FALSE	ACH-000577
JHH2_LIVER	MT-ATP6--MT-CO1	4	2	MT-ATP6	1444	chrM:8970:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	9262	17339	0	0	0.0512	0.0256	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH2_LIVER	0	0	0.0768	FALSE	183	104	9	328	0	FALSE	ACH-000577
JHH2_LIVER	ARHGAP5--NUBPL	2	9	ARHGAP5	2322	chr14:32546641:+	NUBPL	43598	chr14:32315677:+	ONLY_REF_SPLICE	YES	73	21	0.13	0.34	0.0256	0.1152	{Klijn_CCL:Liver=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	JHH2_LIVER	0.13	0.34	0.1408	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	HSP90AB1--MT-RNR2	4	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3106	0	0	1	0.0512	0.0128	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH2_LIVER	0	1	0.064	FALSE	13	9	0	364	0	FALSE	ACH-000577
JHH2_LIVER	PKM--SERPINE1	4	1	PKM	19641	chr15:72491989:-	SERPINE1	23317	chr7:100770426:+	INCL_NON_REF_SPLICE	YES	3157	0	0	1	0.0512	0.0128	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	JHH2_LIVER	0	1	0.064	FALSE	0	0	0	4	0	FALSE	ACH-000577
JHH2_LIVER	FAM222B--PHF12	4	0	FAM222B	1283	chr17:27181968:-	PHF12	35511	chr17:27235899:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0512	0	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	JHH2_LIVER	1	1	0.0512	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	MT-ATP6--MT-CO1	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0512	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH2_LIVER	1	1	0.0512	FALSE	183	104	9	328	0	FALSE	ACH-000577
JHH2_LIVER	MT-ATP6--MT-CO1	4	0	MT-ATP6	1150	chrM:8676:+	MT-CO1	5195	chrM:6417:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0512	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH2_LIVER	1	1	0.0512	FALSE	183	104	9	328	0	FALSE	ACH-000577
JHH2_LIVER	RPSAP52--HMGA2	4	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0512	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	JHH2_LIVER	1	1	0.0512	FALSE	0	59	0	125	0	FALSE	ACH-000577
JHH2_LIVER	ARHGAP5--NUBPL	1	11	ARHGAP5	9216	chr14:32586493:+	NUBPL	45874	chr14:32328324:+	ONLY_REF_SPLICE	YES	193	40	0.06	0.23	0.0128	0.1408	{Klijn_CCL:Liver=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	JHH2_LIVER	0.06	0.23	0.1536	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	LSAMP--ZFAND3	3	2	LSAMP	1067	chr3:117716029:-	ZFAND3	28350	chr6:37897735:+	ONLY_REF_SPLICE	YES	0	22	1	0.19	0.0384	0.0256	LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein,ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3	JHH2_LIVER	0.19	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	MT-ATP6--MT-CO2	3	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	33	6	0.11	0.4	0.0384	0.0128	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHH2_LIVER	0.11	0.4	0.0512	FALSE	59	21	0	114	0	FALSE	ACH-000577
JHH2_LIVER	MT-ATP6--MT-CO2	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	NO	17	4	0.19	0.5	0.0384	0.0128	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHH2_LIVER	0.19	0.5	0.0512	FALSE	59	21	0	114	0	FALSE	ACH-000577
JHH2_LIVER	MT-ATP6--MT-CO2	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	17	4	0.19	0.5	0.0384	0.0128	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHH2_LIVER	0.19	0.5	0.0512	FALSE	59	21	0	114	0	FALSE	ACH-000577
JHH2_LIVER	MT-ND4--MT-ATP8	3	1	MT-ND4	1968	chrM:11727:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10811	33	0	0.11	0.0384	0.0128	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH2_LIVER	0	0.11	0.0512	FALSE	231	217	16	283	0	FALSE	ACH-000577
JHH2_LIVER	MT-ND4--MT-ATP8	3	1	MT-ND4	2283	chrM:12042:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	16	0	0.2	1	0.0384	0.0128	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH2_LIVER	0.2	1	0.0512	FALSE	213	207	15	279	0	FALSE	ACH-000577
JHH2_LIVER	NRIP1--AF127936.7	3	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0384	0.0128	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHH2_LIVER	0.44	1	0.0512	FALSE	164	806	69	479	0	FALSE	ACH-000577
JHH2_LIVER	NRIP1--AF127936.7	3	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0384	0.0128	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHH2_LIVER	0.57	1	0.0512	FALSE	125	705	46	456	0	FALSE	ACH-000577
JHH2_LIVER	PKM--SERPINE1	3	1	PKM	19656	chr15:72491974:-	SERPINE1	23331	chr7:100770440:+	INCL_NON_REF_SPLICE	YES	3162	0	0	1	0.0384	0.0128	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	JHH2_LIVER	0	1	0.0512	FALSE	0	0	0	4	0	FALSE	ACH-000577
JHH2_LIVER	SLCO3A1--RP11-184D12.1	3	1	SLCO3A1	5545	chr15:92459688:+	RP11-184D12.1	30568	chr15:36507962:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0384	0.0128	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,RP11-184D12.1->chr15:36231368-36544458:-	JHH2_LIVER	1	1	0.0512	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	AL109763.2--LINC00478	3	0	AL109763.2	3701	chr21:20110242:-	LINC00478	20169	chr21:17859810:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0384	0	AL109763.2->chr21:19933583-20132321:-,LINC00478->chr21:17442842-17999716:+	JHH2_LIVER	1	1	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	IER3--MT-CO2	3	0	IER3	1529	chr6:30711803:-	MT-CO2	5576	chrM:7805:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0384	0	IER3->Oncogene{Bushman},chr6:30710976-30712331:-,immediate_early_response_3,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHH2_LIVER	1	1	0.0384	FALSE	0	0	0	1	0	FALSE	ACH-000577
JHH2_LIVER	MT-ATP6--MT-CO1	3	0	MT-ATP6	1235	chrM:8761:+	MT-CO1	5957	chrM:7179:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0384	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH2_LIVER	1	1	0.0384	FALSE	183	104	9	328	0	FALSE	ACH-000577
JHH2_LIVER	MT-ND4--MT-ATP8	3	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0384	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH2_LIVER	1	1	0.0384	FALSE	230	193	14	283	0	FALSE	ACH-000577
JHH2_LIVER	MT-ND4--MT-ATP8	3	0	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0384	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH2_LIVER	1	1	0.0384	FALSE	231	217	16	283	0	FALSE	ACH-000577
JHH2_LIVER	MT-ND4--MT-ATP8	3	0	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0384	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH2_LIVER	1	1	0.0384	FALSE	231	205	14	283	0	FALSE	ACH-000577
JHH2_LIVER	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0384	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHH2_LIVER	1	1	0.0384	FALSE	462	80	0	856	0	FALSE	ACH-000577
JHH2_LIVER	RP11-123O10.4--GRIP1	2	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0.0384	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHH2_LIVER	1	1	0.064	FALSE	416	2512	207	587	0	FALSE	ACH-000577
JHH2_LIVER	INADL--AL139147.1	2	1	INADL	39029	chr1:62516730:+	AL139147.1	62049	chr1:67132650:-	ONLY_REF_SPLICE	YES	39	0	0.07	1	0.0256	0.0128	INADL->Oncogene{Bushman},chr1:62208149-62629592:+,AL139147.1->chr1:67131547-67142710:-	JHH2_LIVER	0.07	1	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	BCAR3--RP11-488P3.1	2	0	BCAR3	2227	chr1:94311123:-	RP11-488P3.1	30475	chr1:94219902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	NEIGHBORS_OVERLAP:-:-:[22520],BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,RP11-488P3.1->chr1:94218480-94241000:-	JHH2_LIVER	1	1	0.0256	FALSE	0	0	0	3	0	FALSE	ACH-000577
JHH2_LIVER	CRBN--MKLN1	2	0	CRBN	9586	chr3:3196431:-	MKLN1	35906	chr7:131147976:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	CRBN->cereblon,chr3:3190676-3221394:-,MKLN1->chr7:130794855-131181395:+,muskelin_1	JHH2_LIVER	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	DNAH14--TXNL4A	2	0	DNAH14	3523	chr1:225117537:+	TXNL4A	117621	chr18:77737701:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14,TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A	JHH2_LIVER	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	DNAJC25--UGCG	2	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	JHH2_LIVER	1	1	0.0256	TRUE	50	73	10	50	0	FALSE	ACH-000577
JHH2_LIVER	DPH6--IVNS1ABP	2	0	DPH6	3364	chr15:35830475:-	IVNS1ABP	30540	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	DPH6->chr15:35509546-35838394:-,diphthamine_biosynthesis_6,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	JHH2_LIVER	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	EHMT1--GNAS	2	0	EHMT1	3610	chr9:140605482:+	GNAS	67021	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	JHH2_LIVER	1	1	0.0256	TRUE	0	0	0	2	0	TRUE	ACH-000577
JHH2_LIVER	FARS2--RP3-380B8.4	2	0	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	JHH2_LIVER	1	1	0.0256	FALSE	27	82	4	18	0	FALSE	ACH-000577
JHH2_LIVER	FBN1--CEP152	2	0	FBN1	10235	chr15:48888480:-	CEP152	97694	chr15:49040807:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	LOCAL_REARRANGEMENT:-:[67079],FBN1->chr15:48700503-48938046:-,fibrillin_1,CEP152->centrosomal_protein_152,chr15:49005125-49103343:-	JHH2_LIVER	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	RPSAP52--HMGA2	2	0	RPSAP52	1132	chr12:66220623:-	HMGA2	17766	chr12:66345163:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	JHH2_LIVER	1	1	0.0256	FALSE	0	0	0	2	0	FALSE	ACH-000577
JHH2_LIVER	TRPA1--STAU2	2	0	TRPA1	27254	chr8:72936049:-	STAU2	42614	chr8:74585477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	TRPA1->chr8:72932152-72987852:-,transient_receptor_potential_cation_channel_subfamily_A_member_1,STAU2->chr8:74332604-74659943:-,staufen_double-stranded_RNA_binding_protein_2	JHH2_LIVER	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	UGDH-AS1--SMIM14	2	0	UGDH-AS1	1320	chr4:39529958:+	SMIM14	13861	chr4:39606800:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	NEIGHBORS_OVERLAP:+:-:[48377],UGDH-AS1->UGDH_antisense_RNA_1,chr4:39529639-39596327:+,SMIM14->chr4:39547950-39640710:-,small_integral_membrane_protein_14	JHH2_LIVER	1	1	0.0256	FALSE	0	2	1	2	0	FALSE	ACH-000577
JHH2_LIVER	RP11-680G10.1--GSE1	1	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	34	1	0.11	0.0128	0.0384	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHH2_LIVER	0.11	1	0.0512	TRUE	64	13	3	59	0	FALSE	ACH-000577
JHH2_LIVER	INADL--AL139147.1	1	2	INADL	40147	chr1:62545239:+	AL139147.1	62049	chr1:67132650:-	ONLY_REF_SPLICE	YES	30	0	0.09	1	0.0128	0.0256	INADL->Oncogene{Bushman},chr1:62208149-62629592:+,AL139147.1->chr1:67131547-67142710:-	JHH2_LIVER	0.09	1	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	24	0.75	0.11	0.0128	0.0256	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHH2_LIVER	0.11	0.75	0.0384	FALSE	16	356	14	466	0	FALSE	ACH-000577
JHH2_LIVER	RP11-640M9.1--SEC22B	1	2	RP11-640M9.1	3158	chr1:144519813:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	NO	37	255	0.07	0.01	0.0128	0.0256	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	JHH2_LIVER	0.01	0.07	0.0384	FALSE	20	16	6	14	0	FALSE	ACH-000577
JHH2_LIVER	TSHZ2--RP4-753D4.2	1	2	TSHZ2	7394	chr20:51873110:+	RP4-753D4.2	21502	chr20:41599466:+	ONLY_REF_SPLICE	NO	55	0	0.05	1	0.0128	0.0256	TSHZ2->chr20:51588946-52111869:+,teashirt_zinc_finger_homeobox_2,RP4-753D4.2->chr20:41597383-41600132:+	JHH2_LIVER	0.05	1	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000577
JHH2_LIVER	HIBADH--TAX1BP1	1	1	HIBADH	2459	chr7:27689092:-	TAX1BP1	33549	chr7:27867357:+	ONLY_REF_SPLICE	YES	148	696	0.01	0	0.0128	0.0128	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Putamen_(basal_ganglia)=1,Lung=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[76336],HIBADH->3-hydroxyisobutyrate_dehydrogenase,chr7:27565061-27702614:-,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	JHH2_LIVER	0	0.01	0.0256	FALSE	0	1	0	1	0	FALSE	ACH-000577
JHH2_LIVER	IL1RAP--CLDN1	1	1	IL1RAP	1169	chr3:190232008:+	CLDN1	34498	chr3:190030825:-	ONLY_REF_SPLICE	YES	61	882	0.03	0	0.0128	0.0128	IL1RAP->chr3:190231840-190375843:+,interleukin_1_receptor_accessory_protein,CLDN1->chr3:190023490-190040264:-,claudin_1	JHH2_LIVER	0	0.03	0.0256	FALSE	0	2	0	3	0	FALSE	ACH-000577
JHH2_LIVER	PID1--DNER	1	1	PID1	7106	chr2:230020534:-	DNER	28567	chr2:230253112:-	ONLY_REF_SPLICE	YES	127	825	0.02	0	0.0128	0.0128	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:-:[86344],PID1->chr2:229715242-230136001:-,phosphotyrosine_interaction_domain_containing_1,DNER->chr2:230222345-230579274:-,delta/notch_like_EGF_repeat_containing	JHH2_LIVER	0	0.02	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-000577
JHH2_LIVER	SCARB1--UBC	1	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	170	61	0.01	0.03	0.0128	0.0128	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	JHH2_LIVER	0.01	0.03	0.0256	FALSE	55	66	6	101	0	FALSE	ACH-000577
JHH2_LIVER	SEPT11--CCNI	1	1	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	54	143	0.04	0.01	0.0128	0.0128	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	JHH2_LIVER	0.01	0.04	0.0256	FALSE	0	1	0	17	0	FALSE	ACH-000577
JHH2_LIVER	SHFM1--SLC25A13	1	1	SHFM1	1204	chr7:96339000:-	SLC25A13	27185	chr7:95926263:-	ONLY_REF_SPLICE	YES	902	103	0	0.02	0.0128	0.0128	GTEx&tcga_normals:2/3694=0.05%,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13	JHH2_LIVER	0	0.02	0.0256	FALSE	0	0	0	2	0	FALSE	ACH-000577
JHH2_LIVER	SHFM1--SLC25A13	1	1	SHFM1	1204	chr7:96339000:-	SLC25A13	30498	chr7:95838289:-	ONLY_REF_SPLICE	YES	902	127	0	0.02	0.0128	0.0128	GTEx&tcga_normals:2/3694=0.05%,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13	JHH2_LIVER	0	0.02	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-000577
JHH2_LIVER	SLC34A2--ROS1	1	1	SLC34A2	4738	chr4:25665952:+	ROS1	53374	chr6:117650609:-	ONLY_REF_SPLICE	YES	6	64	0.25	0.03	0.0128	0.0128	Cosmic{samples=1216,mutations=12,papers=39},chimerdb_pubmed{Lung Cancer},{Klijn_CCL:Lung=1},SLC34A2->Oncogene{Bushman},chr4:25656923-25680370:+,solute_carrier_family_34_member_2,ROS1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},ROS_proto-oncogene_1,_receptor_tyrosine_kinase,chr6:117609463-117747018:-	JHH2_LIVER	0.03	0.25	0.0256	TRUE	0	0	0	2	0	FALSE	ACH-000577
JHH2_LIVER	TPT1--RABL3	1	1	TPT1	2377	chr13:45914129:-	RABL3	16297	chr3:120413071:-	ONLY_REF_SPLICE	NO	2124	41	0	0.05	0.0128	0.0128	TPT1->chr13:45911008-45915505:-,tumor_protein,_translationally-controlled_1,RABL3->RAB,_member_of_RAS_oncogene_family_like_3,chr3:120405528-120461840:-	JHH2_LIVER	0	0.05	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-000577
RVH421_SKIN	RPL7L1--MRPL2	273	167	RPL7L1	2349	chr6:42848704:+	MRPL2	15882	chr6:43025971:-	ONLY_REF_SPLICE	YES	116	127	0.79	0.78	3.1301	1.9147	RPL7L1->chr6:42847356-42857663:+,ribosomal_protein_L7_like_1,MRPL2->chr6:43021767-43027544:-,mitochondrial_ribosomal_protein_L2	RVH421_SKIN	0.78	0.79	5.0448	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	ANKRD44--PGAP1	85	27	ANKRD44	3712	chr2:198051747:-	PGAP1	69454	chr2:197709298:-	ONLY_REF_SPLICE	YES	75	49	0.6	0.7	0.9746	0.3096	NEIGHBORS[39221],ANKRD44->Oncogene{Bushman},ankyrin_repeat_domain_44,chr2:197831741-198175897:-,PGAP1->chr2:197697728-197792520:-,post-GPI_attachment_to_proteins_1	RVH421_SKIN	0.6	0.7	1.2842	FALSE	0	0	0	1	0	FALSE	ACH-000614
RVH421_SKIN	TIMM23B--LINC00843	75	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.8599	0.172	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RVH421_SKIN	0.98	1	1.0319	TRUE	508	994	45	981	0	FALSE	ACH-000614
RVH421_SKIN	PPWD1--NLN	64	21	PPWD1	9153	chr5:64875440:+	NLN	30839	chr5:65105342:+	ONLY_REF_SPLICE	YES	56	31	0.6	0.73	0.7338	0.2408	PPWD1->chr5:64859063-64883376:+,peptidylprolyl_isomerase_domain_and_WD_repeat_containing_1,NLN->chr5:65018023-65167553:+,neurolysin	RVH421_SKIN	0.6	0.73	0.9746	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	DOCK4--IMMP2L	58	14	DOCK4	30646	chr7:111462418:-	IMMP2L	72389	chr7:110603621:-	ONLY_REF_SPLICE	YES	8	77	0.9	0.48	0.665	0.1605	DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2	RVH421_SKIN	0.48	0.9	0.8255	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	IL1RAPL1--CXorf57	57	0	IL1RAPL1	7451	chrX:29686621:+	CXorf57	23940	chrX:105880990:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.6535	0	IL1RAPL1->chrX:28605516-29974840:+,interleukin_1_receptor_accessory_protein_like_1,CXorf57->chrX:105855160-105922672:+,chromosome_X_open_reading_frame_57	RVH421_SKIN	1	1	0.6535	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	MT-TA--MT-TC	52	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5962	0.0688	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RVH421_SKIN	1	1	0.665	FALSE	462	80	0	856	0	FALSE	ACH-000614
RVH421_SKIN	ARHGAP42--DLG2	40	14	ARHGAP42	1180	chr11:100558563:+	DLG2	64232	chr11:83691685:-	ONLY_REF_SPLICE	YES	55	1	0.5	0.98	0.4586	0.1605	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	RVH421_SKIN	0.5	0.98	0.6191	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	TIMM23--RP11-464F9.1	42	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	152	2	0.22	0.96	0.4816	0.0115	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RVH421_SKIN	0.22	0.96	0.4931	TRUE	519	3926	326	965	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ND4L	4	149	MT-ND4	1489	chrM:11248:+	MT-ND4L	5385	chrM:10476:+	INCL_NON_REF_SPLICE	YES	418	0	0.27	1	0.0459	1.7084	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RVH421_SKIN	0.27	1	1.7543	FALSE	344	827	44	306	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ND4L	4	146	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	NO	10	1	0.94	0.99	0.0459	1.674	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RVH421_SKIN	0.94	0.99	1.7199	FALSE	344	826	44	306	0	FALSE	ACH-000614
RVH421_SKIN	RP11-444D3.1--SOX5	37	14	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	3	1	0.94	0.4242	0.1605	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	RVH421_SKIN	0.94	1	0.5847	TRUE	477	1352	189	275	0	FALSE	ACH-000614
RVH421_SKIN	RPL7L1--MRPL2	37	12	RPL7L1	1334	chr6:42847689:+	MRPL2	15882	chr6:43025971:-	ONLY_REF_SPLICE	YES	6	127	0.89	0.28	0.4242	0.1376	RPL7L1->chr6:42847356-42857663:+,ribosomal_protein_L7_like_1,MRPL2->chr6:43021767-43027544:-,mitochondrial_ribosomal_protein_L2	RVH421_SKIN	0.28	0.89	0.5618	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ND4L	3	146	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	3	0	0.98	1	0.0344	1.674	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RVH421_SKIN	0.98	1	1.7084	FALSE	344	826	44	306	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ND4L	3	144	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	2	1	0.99	0.99	0.0344	1.651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RVH421_SKIN	0.99	0.99	1.6854	FALSE	344	826	44	306	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ND4L	9	105	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.1032	1.2039	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RVH421_SKIN	0.99	1	1.3071	FALSE	344	821	44	306	0	FALSE	ACH-000614
RVH421_SKIN	RP1-34H18.1--NAV3	26	14	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2981	0.1605	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	RVH421_SKIN	1	1	0.4586	TRUE	254	575	65	124	0	FALSE	ACH-000614
RVH421_SKIN	KANSL1--ARL17B	25	11	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	31	10	0.54	0.78	0.2866	0.1261	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	RVH421_SKIN	0.54	0.78	0.4127	TRUE	181	1564	124	196	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND6--MT-TE	24	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2752	0.0115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RVH421_SKIN	1	1	0.2867	FALSE	499	1288	110	792	0	FALSE	ACH-000614
RVH421_SKIN	ATXN2--RAD9B	20	9	ATXN2	1893	chr12:112036588:-	RAD9B	40626	chr12:110944384:+	ONLY_REF_SPLICE	YES	8	2	0.78	0.94	0.2293	0.1032	ATXN2->ataxin_2,chr12:111890018-112037480:-,RAD9B->RAD9_checkpoint_clamp_component_B,chr12:110939460-110969891:+	RVH421_SKIN	0.78	0.94	0.3325	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ND4L	14	32	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	12122	0	0	1	0.1605	0.3669	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RVH421_SKIN	0	1	0.5274	FALSE	328	800	43	304	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO2	20	6	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	42	0	0.38	1	0.2293	0.0688	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RVH421_SKIN	0.38	1	0.2981	FALSE	59	21	0	114	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ATP8	21	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2408	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RVH421_SKIN	1	1	0.2408	FALSE	230	193	14	283	0	FALSE	ACH-000614
RVH421_SKIN	RP11-123O10.4--GRIP1	15	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.172	0.0459	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RVH421_SKIN	1	1	0.2179	FALSE	416	2512	207	587	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND6--MT-TE	15	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.172	0.0115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RVH421_SKIN	1	1	0.1835	FALSE	499	1288	110	792	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO2	13	8	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	44	0	0.32	1	0.1491	0.0917	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RVH421_SKIN	0.32	1	0.2408	FALSE	59	21	0	114	0	FALSE	ACH-000614
RVH421_SKIN	CTD-2023N9.1--CTD-2023N9.2	14	2	CTD-2023N9.1	1119	chr5:56691005:+	CTD-2023N9.2	11053	chr5:56910004:+	ONLY_REF_SPLICE	YES	42	9	0.28	0.64	0.1605	0.0229	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	RVH421_SKIN	0.28	0.64	0.1834	FALSE	0	0	0	9	0	FALSE	ACH-000614
RVH421_SKIN	EEA1--ALDH2	13	6	EEA1	15519	chr12:93219942:-	ALDH2	46428	chr12:112223071:+	ONLY_REF_SPLICE	YES	65	39	0.23	0.33	0.1491	0.0688	EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,ALDH2->Oncogene{Bushman},aldehyde_dehydrogenase_2_family_(mitochondrial),chr12:112204691-112247782:+	RVH421_SKIN	0.23	0.33	0.2179	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO2	13	4	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	33	0	0.34	1	0.1491	0.0459	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RVH421_SKIN	0.34	1	0.195	FALSE	59	21	0	114	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ND4L	3	41	MT-ND4	1277	chrM:11036:+	MT-ND4L	5652	chrM:10743:+	INCL_NON_REF_SPLICE	YES	46	0	0.49	1	0.0344	0.4701	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RVH421_SKIN	0.49	1	0.5045	FALSE	344	827	44	306	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ND4L	5	32	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	600	0	0.06	1	0.0573	0.3669	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RVH421_SKIN	0.06	1	0.4242	FALSE	344	827	44	306	0	FALSE	ACH-000614
RVH421_SKIN	MTND4P12--MT-CO1	12	4	MTND4P12	1773	chr5:134262954:-	MT-CO1	5915	chrM:6441:+	INCL_NON_REF_SPLICE	YES	1	23702	0.94	0	0.1376	0.0459	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0.94	0.1835	FALSE	10	0	0	6	0	FALSE	ACH-000614
RVH421_SKIN	EEA1--ALDH2	9	12	EEA1	15519	chr12:93219942:-	ALDH2	45287	chr12:112220962:+	ONLY_REF_SPLICE	YES	65	34	0.24	0.38	0.1032	0.1376	EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,ALDH2->Oncogene{Bushman},aldehyde_dehydrogenase_2_family_(mitochondrial),chr12:112204691-112247782:+	RVH421_SKIN	0.24	0.38	0.2408	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	HIBCH--TMCC3	11	3	HIBCH	2532	chr2:191184442:-	TMCC3	36237	chr12:94976314:-	ONLY_REF_SPLICE	YES	11	24	0.56	0.37	0.1261	0.0344	HIBCH->3-hydroxyisobutyryl-CoA_hydrolase,chr2:191054461-191208919:-,TMCC3->chr12:94960900-95044338:-,transmembrane_and_coiled-coil_domain_family_3	RVH421_SKIN	0.37	0.56	0.1605	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO1	11	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9819	24885	0	0	0.1261	0.0229	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0	0.149	FALSE	183	104	9	328	0	FALSE	ACH-000614
RVH421_SKIN	MT-CO3--MT-ATP6	11	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1261	0.0229	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RVH421_SKIN	0.93	1	0.149	FALSE	189	492	56	216	0	FALSE	ACH-000614
RVH421_SKIN	MT-CO3--MT-ATP6	3	33	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0344	0.3784	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RVH421_SKIN	0.92	1	0.4128	FALSE	189	492	56	216	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ATP8	10	5	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14145	73	0	0.17	0.1147	0.0573	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RVH421_SKIN	0	0.17	0.172	FALSE	231	217	16	283	0	FALSE	ACH-000614
RVH421_SKIN	RAB30--PPFIA1	9	6	RAB30	1233	chr11:82782733:-	PPFIA1	47418	chr11:70200407:+	ONLY_REF_SPLICE	YES	14	118	0.52	0.11	0.1032	0.0688	RAB30->RAB30,_member_RAS_oncogene_family,chr11:82684175-82782965:-,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	RVH421_SKIN	0.11	0.52	0.172	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO1	6	17	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	1631	24192	0.01	0	0.0688	0.1949	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0.01	0.2637	FALSE	183	104	9	328	0	FALSE	ACH-000614
RVH421_SKIN	CTD-2023N9.1--CTD-2023N9.2	8	7	CTD-2023N9.1	1119	chr5:56691005:+	CTD-2023N9.2	7902	chr5:56869858:+	INCL_NON_REF_SPLICE	YES	42	0	0.26	1	0.0917	0.0803	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	RVH421_SKIN	0.26	1	0.172	FALSE	0	0	0	6	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND6--MT-TE	6	15	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0688	0.172	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RVH421_SKIN	1	1	0.2408	FALSE	499	1288	110	792	0	FALSE	ACH-000614
RVH421_SKIN	OLA1--HMGB1P27	8	6	OLA1	4128	chr2:175094036:-	HMGB1P27	20329	chr2:192039022:+	INCL_NON_REF_SPLICE	YES	207	0	0.06	1	0.0917	0.0688	OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-,HMGB1P27->chr2:192038959-192039561:+,high_mobility_group_box_1_pseudogene_27	RVH421_SKIN	0.06	1	0.1605	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	RP11-444D3.1--SOX5	7	9	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	1	3	0.94	0.84	0.0803	0.1032	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	RVH421_SKIN	0.84	0.94	0.1835	TRUE	274	363	69	150	0	FALSE	ACH-000614
RVH421_SKIN	CTD-2023N9.1--CTD-2023N9.2	7	8	CTD-2023N9.1	3408	chr5:56792744:+	CTD-2023N9.2	7902	chr5:56869858:+	INCL_NON_REF_SPLICE	YES	50	0	0.23	1	0.0803	0.0917	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	RVH421_SKIN	0.23	1	0.172	FALSE	0	0	0	2	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO2	8	4	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	14	0	0.46	1	0.0917	0.0459	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RVH421_SKIN	0.46	1	0.1376	FALSE	59	21	0	114	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO2	7	4	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	14	0	0.44	1	0.0803	0.0459	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RVH421_SKIN	0.44	1	0.1262	FALSE	59	21	0	114	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO2	6	8	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	44	0	0.24	1	0.0688	0.0917	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RVH421_SKIN	0.24	1	0.1605	FALSE	59	21	0	114	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0917	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RVH421_SKIN	1	1	0.0917	FALSE	230	198	14	283	0	FALSE	ACH-000614
RVH421_SKIN	RP11-96H19.1--RP11-446N19.1	7	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.85	0.92	0.0803	0.0459	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RVH421_SKIN	0.85	0.92	0.1262	FALSE	515	4851	409	746	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO1	7	3	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	11219	23711	0	0	0.0803	0.0344	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0	0.1147	FALSE	183	104	9	328	0	FALSE	ACH-000614
RVH421_SKIN	MT-TA--MT-TC	6	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0688	0.0803	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RVH421_SKIN	1	1	0.1491	FALSE	462	80	0	856	0	FALSE	ACH-000614
RVH421_SKIN	C15orf57--CBX3	6	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	24	50	0.33	0.19	0.0688	0.0688	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RVH421_SKIN	0.19	0.33	0.1376	TRUE	267	562	48	632	0	FALSE	ACH-000614
RVH421_SKIN	ALG13--PABPC5-AS1	7	1	ALG13	7822	chrX:110932425:+	PABPC5-AS1	35595	chrX:90673870:-	ONLY_REF_SPLICE	YES	18	1	0.31	0.89	0.0803	0.0115	ALG13->ALG13,_UDP-N-acetylglucosaminyltransferase_subunit,chrX:110909043-111003877:+,PABPC5-AS1->PABPC5_antisense_RNA_1,chrX:90669877-90689998:-	RVH421_SKIN	0.31	0.89	0.0918	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO1	7	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	9780	22670	0	0	0.0803	0.0115	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0	0.0918	FALSE	183	104	9	328	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO1	7	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	9686	24298	0	0	0.0803	0.0115	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0	0.0918	FALSE	183	104	9	328	0	FALSE	ACH-000614
RVH421_SKIN	MT-TA--MT-TC	7	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0.0115	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RVH421_SKIN	1	1	0.0918	FALSE	462	80	0	856	0	FALSE	ACH-000614
RVH421_SKIN	RP11-141M1.3--STARD13	6	5	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	2	0.85	0.85	0.0688	0.0573	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	RVH421_SKIN	0.85	0.85	0.1261	FALSE	141	264	50	91	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO1	4	12	MT-ATP6	1537	chrM:9063:+	MT-CO1	5319	chrM:6541:+	INCL_NON_REF_SPLICE	YES	4372	24278	0	0	0.0459	0.1376	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0	0.1835	FALSE	183	104	9	328	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO2	6	4	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	14	0	0.42	1	0.0688	0.0459	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RVH421_SKIN	0.42	1	0.1147	FALSE	59	21	0	114	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND6--MT-TE	3	16	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0344	0.1834	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RVH421_SKIN	0.9	1	0.2178	FALSE	499	1288	110	792	0	FALSE	ACH-000614
RVH421_SKIN	RP4-565E6.1--HYDIN	7	0	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0803	0	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	RVH421_SKIN	1	1	0.0803	TRUE	456	1387	91	133	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND6--MT-TE	4	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0459	0.1261	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RVH421_SKIN	0.88	1	0.172	FALSE	499	1288	110	792	0	FALSE	ACH-000614
RVH421_SKIN	MTND4P12--MT-CO1	5	6	MTND4P12	1992	chr5:134262735:-	MT-CO1	6020	chrM:6546:+	INCL_NON_REF_SPLICE	YES	1	24675	0.92	0	0.0573	0.0688	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0.92	0.1261	FALSE	10	0	0	6	0	FALSE	ACH-000614
RVH421_SKIN	RP11-141M1.3--STARD13	5	6	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	2	0.92	0.85	0.0573	0.0688	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	RVH421_SKIN	0.85	0.92	0.1261	FALSE	49	120	16	70	0	FALSE	ACH-000614
RVH421_SKIN	ACTR6--UHRF1BP1L	6	1	ACTR6	7485	chr12:100602667:+	UHRF1BP1L	25995	chr12:100489615:-	ONLY_REF_SPLICE	YES	42	24	0.14	0.23	0.0688	0.0115	LOCAL_INVERSION:+:-:[56274],ACTR6->ARP6_actin-related_protein_6_homolog,chr12:100592900-100635643:+,UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-	RVH421_SKIN	0.14	0.23	0.0803	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	MT-ND6--MT-TE	4	9	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0.1032	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RVH421_SKIN	1	1	0.1491	FALSE	499	1288	110	792	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO1	3	12	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3176	25263	0	0	0.0344	0.1376	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0	0.172	FALSE	183	104	9	328	0	FALSE	ACH-000614
RVH421_SKIN	MT-TA--MT-TC	4	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0.0917	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RVH421_SKIN	1	1	0.1376	FALSE	462	80	0	856	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO1	5	3	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	YES	5141	22051	0	0	0.0573	0.0344	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0	0.0917	FALSE	183	104	9	328	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO1	5	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11735	24680	0	0	0.0573	0.0344	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0	0.0917	FALSE	183	104	9	328	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ATP8	5	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14535	73	0	0.1	0.0573	0.0344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RVH421_SKIN	0	0.1	0.0917	FALSE	231	217	16	283	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ATP8	5	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14986	4	0	0.67	0.0573	0.0344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RVH421_SKIN	0	0.67	0.0917	FALSE	231	217	16	283	0	FALSE	ACH-000614
RVH421_SKIN	RFTN2--ANKS1B	5	3	RFTN2	9920	chr2:198460715:-	ANKS1B	46812	chr12:99447087:-	ONLY_REF_SPLICE	YES	18	0	0.31	1	0.0573	0.0344	RFTN2->chr2:198432948-198540769:-,raftlin_family_member_2,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	RVH421_SKIN	0.31	1	0.0917	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	CTD-2023N9.1--CTD-2023N9.2	5	2	CTD-2023N9.1	3408	chr5:56792744:+	CTD-2023N9.2	11053	chr5:56910004:+	ONLY_REF_SPLICE	YES	50	9	0.12	0.44	0.0573	0.0229	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	RVH421_SKIN	0.12	0.44	0.0802	FALSE	0	0	0	7	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ATP8	5	2	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	16563	798	0	0.01	0.0573	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RVH421_SKIN	0	0.01	0.0802	FALSE	231	217	16	283	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO1	5	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	9062	23800	0	0	0.0573	0.0115	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0	0.0688	FALSE	183	104	9	328	0	FALSE	ACH-000614
RVH421_SKIN	C15orf57--CBX3	4	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	23	50	0.26	0.14	0.0459	0.0459	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RVH421_SKIN	0.14	0.26	0.0918	TRUE	267	562	48	632	0	FALSE	ACH-000614
RVH421_SKIN	FAM120C--GYG2	5	0	FAM120C	1782	chrX:54208933:-	GYG2	38287	chrX:2793851:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0573	0	FAM120C->chrX:54094757-54209714:-,family_with_sequence_similarity_120C,GYG2->chrX:2746829-2800859:+,glycogenin_2	RVH421_SKIN	1	1	0.0573	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO2	3	8	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	44	0	0.2	1	0.0344	0.0917	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RVH421_SKIN	0.2	1	0.1261	FALSE	59	21	0	114	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO2	4	4	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	31	0	0.21	1	0.0459	0.0459	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RVH421_SKIN	0.21	1	0.0918	FALSE	59	21	0	114	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO2	3	8	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	44	0	0.2	1	0.0344	0.0917	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RVH421_SKIN	0.2	1	0.1261	FALSE	59	21	0	114	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO2	4	4	MT-ATP6	1118	chrM:8644:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	14	5	0.36	0.62	0.0459	0.0459	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RVH421_SKIN	0.36	0.62	0.0918	FALSE	59	21	0	114	0	FALSE	ACH-000614
RVH421_SKIN	PHKA2--CSF2RA	5	0	PHKA2	6203	chrX:18966862:-	CSF2RA	51453	chrX:1419384:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0573	0	PHKA2->chrX:18910418-19002716:-,phosphorylase_kinase,_alpha_2_(liver),CSF2RA->chrX:1387693-1429274:+,chrY:1337693-1379274:+,colony_stimulating_factor_2_receptor_alpha_subunit	RVH421_SKIN	1	1	0.0573	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	RP11-444D3.1--SOX5	1	15	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	4	1	0.8	0.0115	0.172	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	RVH421_SKIN	0.8	1	0.1835	TRUE	160	277	29	98	0	FALSE	ACH-000614
RVH421_SKIN	NLGN1--NAALADL2	4	2	NLGN1	8770	chr3:173322881:+	NAALADL2	42973	chr3:174814580:+	ONLY_REF_SPLICE	YES	17	0	0.26	1	0.0459	0.0229	NLGN1->chr3:173114074-174004434:+,neuroligin_1,NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+	RVH421_SKIN	0.26	1	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO1	4	1	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	12353	16819	0	0	0.0459	0.0115	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0	0.0574	FALSE	183	104	9	328	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO1	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9424	24680	0	0	0.0459	0.0115	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0	0.0574	FALSE	183	104	9	328	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO2	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	33	3	0.13	0.62	0.0459	0.0115	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RVH421_SKIN	0.13	0.62	0.0574	FALSE	59	21	0	114	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ATP8	3	5	MT-ND4	1998	chrM:11757:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14750	4	0	0.67	0.0344	0.0573	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RVH421_SKIN	0	0.67	0.0917	FALSE	231	217	16	283	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ATP8	3	5	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	14145	221	0	0.03	0.0344	0.0573	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RVH421_SKIN	0	0.03	0.0917	FALSE	231	217	16	283	0	FALSE	ACH-000614
RVH421_SKIN	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	5	1	0.5	0.0459	0.0115	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RVH421_SKIN	0.5	1	0.0574	TRUE	465	1949	224	605	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO1	3	4	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	11660	23472	0	0	0.0344	0.0459	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0	0.0803	FALSE	183	104	9	328	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO1	3	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	11735	23569	0	0	0.0344	0.0459	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0	0.0803	FALSE	183	104	9	328	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO2	3	4	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	35	0	0.17	1	0.0344	0.0459	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RVH421_SKIN	0.17	1	0.0803	FALSE	59	21	0	114	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ATP8	4	0	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RVH421_SKIN	1	1	0.0459	FALSE	231	205	14	283	0	FALSE	ACH-000614
RVH421_SKIN	MTND4P12--MT-CO1	4	0	MTND4P12	1984	chr5:134262743:-	MT-CO1	6674	chrM:7200:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	1	1	0.0459	FALSE	10	0	0	6	0	FALSE	ACH-000614
RVH421_SKIN	MTND4P12--MT-CO1	4	0	MTND4P12	1299	chr5:134263428:-	MT-CO1	6075	chrM:6601:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	1	1	0.0459	FALSE	10	0	0	6	0	FALSE	ACH-000614
RVH421_SKIN	SLC1A5--MT-ND4L	4	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RVH421_SKIN	1	1	0.0459	FALSE	0	0	0	189	0	FALSE	ACH-000614
RVH421_SKIN	AC074363.1--B3GALT1	1	11	AC074363.1	2265	chr2:168346787:+	B3GALT1	6463	chr2:168675182:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0115	0.1261	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	RVH421_SKIN	1	1	0.1376	TRUE	0	4	2	6	4	TRUE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO1	3	3	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	10046	23226	0	0	0.0344	0.0344	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0	0.0688	FALSE	183	104	9	328	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ATP8	3	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	14986	903	0	0.01	0.0344	0.0344	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RVH421_SKIN	0	0.01	0.0688	FALSE	231	217	16	283	0	FALSE	ACH-000614
RVH421_SKIN	CTD-2023N9.1--CTD-2023N9.2	3	2	CTD-2023N9.1	4428	chr5:56828782:+	CTD-2023N9.2	11053	chr5:56910004:+	INCL_NON_REF_SPLICE	YES	51	9	0.09	0.36	0.0344	0.0229	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	RVH421_SKIN	0.09	0.36	0.0573	FALSE	0	0	0	1	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ATP8	3	2	MT-ND4	1531	chrM:11290:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	16973	1	0	0.83	0.0344	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RVH421_SKIN	0	0.83	0.0573	FALSE	231	217	16	283	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ATP8	3	2	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16813	73	0	0.06	0.0344	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RVH421_SKIN	0	0.06	0.0573	FALSE	231	217	16	283	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO1	3	1	MT-ATP6	1082	chrM:8608:+	MT-CO1	5379	chrM:6601:+	INCL_NON_REF_SPLICE	YES	7338	24993	0	0	0.0344	0.0115	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0	0.0459	FALSE	183	104	9	328	0	FALSE	ACH-000614
RVH421_SKIN	MT-ATP6--MT-CO1	3	1	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	YES	9465	23428	0	0	0.0344	0.0115	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	0	0	0.0459	FALSE	183	104	9	328	0	FALSE	ACH-000614
RVH421_SKIN	AC074363.1--B3GALT1	2	4	AC074363.1	2265	chr2:168346787:+	B3GALT1	7585	chr2:168725321:+	ONLY_REF_SPLICE	YES	0	5	1	0.55	0.0229	0.0459	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	RVH421_SKIN	0.55	1	0.0688	TRUE	0	0	0	2	0	TRUE	ACH-000614
RVH421_SKIN	MT-CO3--MT-ATP6	3	0	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RVH421_SKIN	1	1	0.0344	FALSE	189	492	56	216	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ATP8	3	0	MT-ND4	1489	chrM:11248:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RVH421_SKIN	1	1	0.0344	FALSE	231	217	16	283	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ATP8	3	0	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RVH421_SKIN	1	1	0.0344	FALSE	231	205	14	283	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ATP8	3	0	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RVH421_SKIN	1	1	0.0344	FALSE	231	204	14	283	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ATP8	3	0	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RVH421_SKIN	1	1	0.0344	FALSE	231	217	16	283	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND4--MT-ATP8	3	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RVH421_SKIN	1	1	0.0344	FALSE	231	205	14	283	0	FALSE	ACH-000614
RVH421_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RVH421_SKIN	1	1	0.0344	FALSE	499	1288	110	792	0	FALSE	ACH-000614
RVH421_SKIN	MTND4P12--MT-CO1	3	0	MTND4P12	1245	chr5:134263482:-	MT-CO1	6027	chrM:6553:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RVH421_SKIN	1	1	0.0344	FALSE	10	0	0	6	0	FALSE	ACH-000614
RVH421_SKIN	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0229	0.0459	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RVH421_SKIN	0.75	1	0.0688	FALSE	407	2205	196	549	0	FALSE	ACH-000614
RVH421_SKIN	RP11-444D3.1--SOX5	1	6	RP11-444D3.1	4602	chr12:24521497:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	6	4	0.54	0.64	0.0115	0.0688	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	RVH421_SKIN	0.54	0.64	0.0803	TRUE	0	1	0	1	0	FALSE	ACH-000614
RVH421_SKIN	COL19A1--CHMP1A	2	1	COL19A1	15565	chr6:70672762:+	CHMP1A	61817	chr16:89713739:-	ONLY_REF_SPLICE	YES	116	187	0.03	0.02	0.0229	0.0115	COL19A1->Oncogene{Bushman},chr6:70576463-70919679:+,collagen_type_XIX_alpha_1,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	RVH421_SKIN	0.02	0.03	0.0344	TRUE	0	0	0	1	0	FALSE	ACH-000614
RVH421_SKIN	ALG13--PABPC5-AS1	2	0	ALG13	4473	chrX:110928331:+	PABPC5-AS1	35595	chrX:90673870:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	ALG13->ALG13,_UDP-N-acetylglucosaminyltransferase_subunit,chrX:110909043-111003877:+,PABPC5-AS1->PABPC5_antisense_RNA_1,chrX:90669877-90689998:-	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	C17orf76-AS1--PICALM	2	0	C17orf76-AS1	1593	chr17:16342728:+	PICALM	29540	chr11:85695016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	C17orf76-AS1->chr17:16342136-16381992:+,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	CCDC14--KPNA1	2	0	CCDC14	1574	chr3:123679991:-	KPNA1	26668	chr3:122186276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx&tcga_normals:1/3694=0.03%,CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14,KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	CPB2-AS1--ITGB3BP	2	0	CPB2-AS1	1160	chr13:46627100:+	ITGB3BP	23856	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	CPB2-AS1->CPB2_antisense_RNA_1,chr13:46626941-46687467:+,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	CPB2-AS1--ZC3H13	2	0	CPB2-AS1	1160	chr13:46627100:+	ZC3H13	23051	chr13:46563232:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LOCAL_INVERSION:+:-:[47],CPB2-AS1->CPB2_antisense_RNA_1,chr13:46626941-46687467:+,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	2	0	TRUE	ACH-000614
RVH421_SKIN	MIR181A1HG--C1orf27	2	0	MIR181A1HG	1204	chr1:198906355:-	C1orf27	24279	chr1:186386676:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	MIR181A1HG->MIR181A1_host_gene,chr1:198776622-198906558:-,C1orf27->chr1:186344890-186390510:+,chromosome_1_open_reading_frame_27	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	STEAP1B--RP11-390P2.4	2	0	STEAP1B	2501	chr7:22539733:-	RP11-390P2.4	14849	chr6:139017734:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	STEAP1B->STEAP_family_member_1B,chr7:22459063-22672544:-,RP11-390P2.4->chr6:139013685-139018425:+	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	TNRC6B--TSNARE1	2	0	TNRC6B	6221	chr22:40574144:+	TSNARE1	50046	chr8:143436124:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	TNRC6B->chr22:40440821-40731812:+,trinucleotide_repeat_containing_6B,TSNARE1->chr8:143293441-143484601:-,t-SNARE_domain_containing_1	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	USP53--PDS5A	2	0	USP53	1287	chr4:120134028:+	PDS5A	35685	chr4:39929784:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	USP53->chr4:120133742-120216672:+,ubiquitin_specific_peptidase_53,PDS5A->PDS5_cohesin_associated_factor_A,chr4:39824483-39979576:-	RVH421_SKIN	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	KANSL1--ARL17B	1	3	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	31	8	0.11	0.33	0.0115	0.0344	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	RVH421_SKIN	0.11	0.33	0.0459	TRUE	20	16	0	28	0	FALSE	ACH-000614
RVH421_SKIN	ARHGAP42--DLG2	1	2	ARHGAP42	1180	chr11:100558563:+	DLG2	65369	chr11:83676511:-	ONLY_REF_SPLICE	YES	55	6	0.05	0.33	0.0115	0.0229	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	RVH421_SKIN	0.05	0.33	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000614
RVH421_SKIN	CKMT2-AS1--ZFYVE16	1	1	CKMT2-AS1	1274	chr5:80597106:-	ZFYVE16	21857	chr5:79729928:+	ONLY_REF_SPLICE	YES	39	86	0.05	0.02	0.0115	0.0115	CKMT2-AS1->CKMT2_antisense_RNA_1,chr5:80499903-80597379:-,ZFYVE16->chr5:79703832-79775169:+,zinc_finger_FYVE-type_containing_16	RVH421_SKIN	0.02	0.05	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000614
RVH421_SKIN	LRRFIP2--GULP1	1	1	LRRFIP2	22974	chr3:37138107:-	GULP1	52628	chr2:189393824:+	ONLY_REF_SPLICE	NO	254	254	0.01	0.01	0.0115	0.0115	LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2,GULP1->GULP,_engulfment_adaptor_PTB_domain_containing_1,chr2:189156396-189460653:+	RVH421_SKIN	0.01	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000614
RVH421_SKIN	PIKFYVE--HMGA2	1	1	PIKFYVE	36046	chr2:209210871:+	HMGA2	61248	chr12:66345163:+	ONLY_REF_SPLICE	YES	69	79	0.03	0.02	0.0115	0.0115	PIKFYVE->chr2:209130991-209223475:+,phosphoinositide_kinase,_FYVE-type_zinc_finger_containing,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	RVH421_SKIN	0.02	0.03	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000614
RVH421_SKIN	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0.0115	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RVH421_SKIN	1	1	0.023	FALSE	93	270	15	244	0	FALSE	ACH-000614
RVH421_SKIN	SCFD2--FIP1L1	1	1	SCFD2	4269	chr4:54179803:-	FIP1L1	22651	chr4:54265897:+	ONLY_REF_SPLICE	NO	92	256	0.02	0.01	0.0115	0.0115	GTEx_FI:{Pancreas=[count:1=pct:0.6],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=6;pct=0.07%;dist=Ovary=1,Prostate=1,Liver=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[11568],SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	RVH421_SKIN	0.01	0.02	0.023	FALSE	0	0	0	2	0	FALSE	ACH-000614
RVH421_SKIN	TIMM17A--EFCAB2	1	1	TIMM17A	2356	chr1:201926702:+	EFCAB2	18921	chr1:245245385:+	ONLY_REF_SPLICE	YES	231	17	0.01	0.11	0.0115	0.0115	TIMM17A->chr1:201924619-201939789:+,translocase_of_inner_mitochondrial_membrane_17_homolog_A_(yeast),EFCAB2->EF-hand_calcium_binding_domain_2,chr1:245133007-245290466:+	RVH421_SKIN	0.01	0.11	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000614
SCABER_URINARY_TRACT	CDH13--HSBP1	157	45	CDH13	23242	chr16:83636199:+	HSBP1	37137	chr16:83842285:+	ONLY_REF_SPLICE	YES	47	304	0.81	0.4	1.583	0.4537	NEIGHBORS[11244],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,HSBP1->chr16:83841448-83853342:+,heat_shock_factor_binding_protein_1	SCABER_URINARY_TRACT	0.4	0.81	2.0367	FALSE	0	1	0	2	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TN	148	1	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4923	0.0101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCABER_URINARY_TRACT	1	1	1.5024	FALSE	369	2501	205	193	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TC	140	22	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4116	0.2218	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCABER_URINARY_TRACT	1	1	1.6334	FALSE	462	80	0	856	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND1--MT-RNR2	124	4	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	NO	158	207	0.45	0.38	1.2503	0.0403	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SCABER_URINARY_TRACT	0.38	0.45	1.2906	FALSE	92	22	4	61	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	70	15	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5521	17	0.02	0.83	0.7058	0.1512	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0.02	0.83	0.857	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND6--MT-TE	70	8	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7058	0.0807	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCABER_URINARY_TRACT	1	1	0.7865	FALSE	499	1288	110	792	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	10	244	MT-ND4	1741	chrM:11500:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	8760	0	0.03	1	0.1008	2.4602	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.03	1	2.561	FALSE	344	827	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	6	235	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	49	0	0.83	1	0.0605	2.3695	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.83	1	2.43	FALSE	344	827	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	6	234	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	52	0	0.82	1	0.0605	2.3594	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.82	1	2.4199	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	6	233	MT-ND4	1180	chrM:10939:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	46	0	0.84	1	0.0605	2.3493	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.84	1	2.4098	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	5	231	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	40	0	0.86	1	0.0504	2.3292	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.86	1	2.3796	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	4	235	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	48	0	0.83	1	0.0403	2.3695	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.83	1	2.4098	FALSE	344	827	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	4	235	MT-ND4	1213	chrM:10972:+	MT-ND4L	5376	chrM:10467:+	INCL_NON_REF_SPLICE	YES	57	0	0.81	1	0.0403	2.3695	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.81	1	2.4098	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	3	237	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	1046	0	0.19	1	0.0302	2.3897	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.19	1	2.4199	FALSE	344	827	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	5	228	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	39	0	0.86	1	0.0504	2.2989	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.86	1	2.3493	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	4	232	MT-ND4	1299	chrM:11058:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	YES	104	0	0.69	1	0.0403	2.3392	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.69	1	2.3795	FALSE	344	827	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	5	228	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	29	0	0.89	1	0.0504	2.2989	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.89	1	2.3493	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	3	235	MT-ND4	1263	chrM:11022:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	69	0	0.78	1	0.0302	2.3695	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.78	1	2.3997	FALSE	344	827	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	3	233	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	NO	45	0	0.84	1	0.0302	2.3493	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.84	1	2.3795	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	3	232	MT-ND4	1159	chrM:10918:+	MT-ND4L	5503	chrM:10594:+	INCL_NON_REF_SPLICE	YES	39	0	0.86	1	0.0302	2.3392	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.86	1	2.3694	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	12	190	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	16	0	0.93	1	0.121	1.9158	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.93	1	2.0368	FALSE	344	821	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	50	5	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	19735	9	0	0.86	0.5041	0.0504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.86	0.5545	FALSE	230	193	14	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	10	159	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	27	1	0.86	0.99	0.1008	1.6032	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.86	0.99	1.704	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TN	32	69	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3227	0.6957	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCABER_URINARY_TRACT	1	1	1.0184	FALSE	369	2501	205	193	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	TIMM23B--LINC00843	45	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4537	0.121	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SCABER_URINARY_TRACT	1	1	0.5747	TRUE	508	994	45	981	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	4	165	MT-ND4	1062	chrM:10821:+	MT-ND4L	5516	chrM:10607:+	INCL_NON_REF_SPLICE	NO	17	0	0.91	1	0.0403	1.6637	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.91	1	1.704	FALSE	344	821	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	38	11	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9101	140	0.01	0.26	0.3832	0.1109	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0.01	0.26	0.4941	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TN	37	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3731	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCABER_URINARY_TRACT	1	1	0.3731	FALSE	369	2501	205	193	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	36	3	MT-ND4	1152	chrM:10911:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	NO	15706	0	0	1	0.363	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	1	0.3932	FALSE	230	193	14	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TN	36	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.363	0.0101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCABER_URINARY_TRACT	1	1	0.3731	FALSE	369	2501	205	193	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND6--MT-TE	28	26	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	8	0	0.87	1	0.2823	0.2622	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCABER_URINARY_TRACT	0.87	1	0.5445	FALSE	499	1288	110	792	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	LRP11--RP11-287D1.3	32	9	LRP11	7724	chr6:150157221:-	RP11-287D1.3	49840	chr2:74443343:-	ONLY_REF_SPLICE	YES	55	0	0.43	1	0.3227	0.0907	LRP11->LDL_receptor_related_protein_11,chr6:150139934-150186199:-,RP11-287D1.3->chr2:74438731-74590504:-	SCABER_URINARY_TRACT	0.43	1	0.4134	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	3	125	MT-ND4	1818	chrM:11577:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	15134	0	0.01	1	0.0302	1.2604	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.01	1	1.2906	FALSE	344	827	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	26	30	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	6	2	0.9	0.97	0.2622	0.3025	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0.9	0.97	0.5647	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	3	117	MT-ND4	1170	chrM:10929:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	45	0	0.73	1	0.0302	1.1797	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.73	1	1.2099	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TC	27	20	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2722	0.2017	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCABER_URINARY_TRACT	1	1	0.4739	FALSE	462	80	0	856	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	22	35	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	22159	0	0	1	0.2218	0.3529	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0	1	0.5747	FALSE	328	800	43	304	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	3	108	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	37	0	0.75	1	0.0302	1.089	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.75	1	1.1192	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	25	18	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	16079	0	0	1	0.2521	0.1815	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0	1	0.4336	FALSE	344	827	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	5	96	MT-ND4	1144	chrM:10903:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	39	0	0.72	1	0.0504	0.968	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.72	1	1.0184	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TN	24	20	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.242	0.2017	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCABER_URINARY_TRACT	1	1	0.4437	FALSE	369	2501	205	193	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	4	97	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	43	0	0.7	1	0.0403	0.978	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.7	1	1.0183	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	25	10	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	28356	0	0	1	0.2521	0.1008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	1	0.3529	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TN	11	65	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1109	0.6554	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCABER_URINARY_TRACT	1	1	0.7663	FALSE	369	2501	205	193	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TN	15	46	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1512	0.4638	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCABER_URINARY_TRACT	1	1	0.615	FALSE	369	2501	205	193	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND6--MT-TE	24	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.242	0.0807	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCABER_URINARY_TRACT	1	1	0.3227	FALSE	499	1288	110	792	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	24	5	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19761	17	0	0.63	0.242	0.0504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.63	0.2924	FALSE	230	198	14	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	7	72	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	9	0	0.9	1	0.0706	0.726	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.9	1	0.7966	FALSE	344	821	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	6	74	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	16	0	0.83	1	0.0605	0.7461	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.83	1	0.8066	FALSE	344	821	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TC	24	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.242	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCABER_URINARY_TRACT	1	1	0.242	FALSE	462	80	0	856	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	14	30	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.96	0.1412	0.3025	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0.96	1	0.4437	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	CAD--KHK	20	4	CAD	11172	chr2:27455562:+	KHK	31326	chr2:27320371:+	ONLY_REF_SPLICE	YES	41	3	0.37	0.89	0.2017	0.0403	CAD->carbamoyl-phosphate_synthetase_2,_aspartate_transcarbamylase,_and_dihydroorotase,chr2:27440258-27466811:+,KHK->chr2:27309615-27323640:+,ketohexokinase	SCABER_URINARY_TRACT	0.37	0.89	0.242	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	17	16	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	26986	138	0	0.19	0.1714	0.1613	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.19	0.3327	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	18	11	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	48	0	0.38	1	0.1815	0.1109	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.38	1	0.2924	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	TIMM23--RP11-464F9.1	20	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	177	0	0.11	1	0.2017	0.0101	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SCABER_URINARY_TRACT	0.11	1	0.2118	TRUE	519	3926	326	965	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	5	60	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	8	0	0.89	1	0.0504	0.605	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.89	1	0.6554	FALSE	344	821	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	16	16	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	49	0	0.4	1	0.1613	0.1613	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.4	1	0.3226	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	16	16	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	819	0	0.04	1	0.1613	0.1613	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.04	1	0.3226	FALSE	344	827	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	C15orf57--CBX3	17	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	19	36	0.57	0.41	0.1714	0.0807	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SCABER_URINARY_TRACT	0.41	0.57	0.2521	TRUE	267	562	48	632	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	HSPBP1--ZSWIM6	19	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1916	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	SCABER_URINARY_TRACT	1	1	0.1916	TRUE	47	32	1	28	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	15	12	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	27451	17	0	0.61	0.1512	0.121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.61	0.2722	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	16	6	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	23515	17	0	0.56	0.1613	0.0605	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.56	0.2218	FALSE	231	205	14	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND6--MT-TE	8	35	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	8	0	0.84	1	0.0807	0.3529	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCABER_URINARY_TRACT	0.84	1	0.4336	FALSE	499	1288	110	792	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TN	6	42	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0605	0.4235	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCABER_URINARY_TRACT	1	1	0.484	FALSE	369	2501	205	193	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TN	10	25	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1008	0.2521	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCABER_URINARY_TRACT	1	1	0.3529	FALSE	369	2501	205	193	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	12	16	MT-ND5	2514	chrM:13850:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5137	140	0.01	0.17	0.121	0.1613	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0.01	0.17	0.2823	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-CO3	6	40	MT-ND5	2797	chrM:14133:+	MT-CO3	5818	chrM:9212:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0605	0.4033	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SCABER_URINARY_TRACT	1	1	0.4638	FALSE	0	15	2	17	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-CO3	11	17	MT-ND5	2591	chrM:13927:+	MT-CO3	6171	chrM:9565:+	INCL_NON_REF_SPLICE	YES	4675	23394	0.01	0	0.1109	0.1714	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SCABER_URINARY_TRACT	0	0.01	0.2823	FALSE	0	15	2	18	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	6	36	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	95	0	0.31	1	0.0605	0.363	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0.31	1	0.4235	FALSE	213	207	15	279	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND6--MT-TE	9	24	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0907	0.242	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCABER_URINARY_TRACT	1	1	0.3327	FALSE	499	1288	110	792	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	10	18	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	6	728	0.82	0.04	0.1008	0.1815	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0.04	0.82	0.2823	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TC	9	22	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0907	0.2218	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCABER_URINARY_TRACT	1	1	0.3125	FALSE	462	80	0	856	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	8	23	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	25913	138	0	0.18	0.0807	0.2319	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.18	0.3126	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	10	14	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	27883	1059	0	0.02	0.1008	0.1412	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.02	0.242	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	9	18	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	11573	0	0	1	0.0907	0.1815	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0	1	0.2722	FALSE	344	827	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	11	8	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	27509	1845	0	0.01	0.1109	0.0807	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.01	0.1916	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND6--MT-TE	13	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1311	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCABER_URINARY_TRACT	1	1	0.1311	FALSE	499	1288	110	792	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	ROCK1--WHAMMP3	12	4	ROCK1	24846	chr18:18550309:-	WHAMMP3	51499	chr15:23191920:-	ONLY_REF_SPLICE	YES	66	7	0.2	0.7	0.121	0.0403	ROCK1->Rho_associated_coiled-coil_containing_protein_kinase_1,chr18:18526867-18691812:-,WHAMMP3->WAS_protein_homolog_associated_with_actin,_golgi_membranes_and_microtubules_pseudogene_3,chr15:23187728-23208737:-	SCABER_URINARY_TRACT	0.2	0.7	0.1613	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	RP5-857K21.11--MTATP6P1	13	0	RP5-857K21.11	1090	chr1:569845:+	MTATP6P1	4851	chr1:569379:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1311	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SCABER_URINARY_TRACT	1	1	0.1311	TRUE	16	42	4	10	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND6--MT-TE	4	35	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	8	0	0.83	1	0.0403	0.3529	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCABER_URINARY_TRACT	0.83	1	0.3932	FALSE	499	1288	110	792	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	11	6	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	30209	993	0	0.02	0.1109	0.0605	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.02	0.1714	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	3	38	MT-ND4	2280	chrM:12039:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	204	0	0.17	1	0.0302	0.3832	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0.17	1	0.4134	FALSE	216	209	16	281	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	5	30	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	27549	0	0	1	0.0504	0.3025	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	1	0.3529	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	4	34	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	18200	0	0	1	0.0403	0.3428	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0	1	0.3831	FALSE	344	827	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	5	30	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1328	0	0.03	1	0.0504	0.3025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.03	1	0.3529	FALSE	344	827	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	7	22	MT-ND5	2247	chrM:13583:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	5464	0	0.01	1	0.0706	0.2218	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0.01	1	0.2924	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	KRT5--MT-CO3	11	5	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	2995	22548	0.01	0	0.1109	0.0504	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SCABER_URINARY_TRACT	0	0.01	0.1613	FALSE	0	0	0	18	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RP5-857K21.11--MTATP6P1	12	1	RP5-857K21.11	1220	chr1:569975:+	MTATP6P1	4835	chr1:569363:+	INCL_NON_REF_SPLICE	YES	7	288	0.65	0.04	0.121	0.0101	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SCABER_URINARY_TRACT	0.04	0.65	0.1311	TRUE	16	42	4	10	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	HSP90AB1--MT-RNR2	12	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.121	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SCABER_URINARY_TRACT	1	1	0.121	FALSE	13	9	0	364	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	3	36	MT-ND5	2782	chrM:14118:+	MT-ATP8	5846	chrM:8399:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.363	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	1	1	0.3932	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	8	16	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	6073	2	0	0.92	0.0807	0.1613	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.92	0.242	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TN	12	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.121	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCABER_URINARY_TRACT	1	1	0.121	FALSE	369	2501	205	193	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	ZNF654--HMGB2	12	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.121	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SCABER_URINARY_TRACT	1	1	0.121	TRUE	0	0	0	518	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND1--MT-RNR2	6	23	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	151	0	0.16	1	0.0605	0.2319	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SCABER_URINARY_TRACT	0.16	1	0.2924	FALSE	114	26	4	85	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND6--MT-TE	3	35	MT-ND6	1153	chrM:14521:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.0302	0.3529	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCABER_URINARY_TRACT	0.93	1	0.3831	FALSE	499	1288	110	792	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND6--MT-TE	3	34	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	8	0	0.82	1	0.0302	0.3428	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCABER_URINARY_TRACT	0.82	1	0.373	FALSE	499	1288	110	792	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND1--MT-RNR2	4	29	MT-ND1	1315	chrM:3621:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	162	0	0.17	1	0.0403	0.2924	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SCABER_URINARY_TRACT	0.17	1	0.3327	FALSE	114	26	4	85	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	10	5	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19917	138	0	0.1	0.1008	0.0504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.1	0.1512	FALSE	230	198	14	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	7	17	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	27550	0	0	1	0.0706	0.1714	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	1	0.242	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	11	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.92	0.1109	0.0101	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.92	1	0.121	FALSE	344	821	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	4	29	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	46	0	0.42	1	0.0403	0.2924	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.42	1	0.3327	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	3	32	MT-ND4	2170	chrM:11929:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	14366	1	0	0.97	0.0302	0.3227	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.97	0.3529	FALSE	231	215	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	7	16	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	8928	0	0	1	0.0706	0.1613	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	1	0.2319	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TN	4	28	MT-TA	1071	chrM:5585:-	MT-TN	4113	chrM:5686:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0.2823	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCABER_URINARY_TRACT	1	1	0.3226	FALSE	369	2501	205	193	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	4	27	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8976	138	0	0.18	0.0403	0.2722	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.18	0.3125	FALSE	218	210	16	281	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	4	27	MT-ND5	2675	chrM:14011:+	MT-ATP8	5892	chrM:8445:+	INCL_NON_REF_SPLICE	YES	1904	2	0.02	0.94	0.0403	0.2722	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0.02	0.94	0.3125	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	3	29	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	27830	0	0	1	0.0302	0.2924	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	1	0.3226	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	9	5	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19592	17	0	0.45	0.0907	0.0504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.45	0.1411	FALSE	230	193	14	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	3	29	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	52	0	0.38	1	0.0302	0.2924	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.38	1	0.3226	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	3	29	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	43	0	0.43	1	0.0302	0.2924	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.43	1	0.3226	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	3	29	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	77	0	0.29	1	0.0302	0.2924	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.29	1	0.3226	FALSE	344	827	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	5	21	MT-ND5	2764	chrM:14100:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	YES	1	9	0.96	0.74	0.0504	0.2117	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0.74	0.96	0.2621	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	6	16	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	43	0	0.34	1	0.0605	0.1613	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.34	1	0.2218	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	NRIP1--AF127936.7	10	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1008	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCABER_URINARY_TRACT	1	1	0.1008	FALSE	292	1546	117	613	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	7	11	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	27725	1	0	0.95	0.0706	0.1109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.95	0.1815	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	4	23	MT-ND4	1016	chrM:10775:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	7	0	0.79	1	0.0403	0.2319	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.79	1	0.2722	FALSE	344	821	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	3	26	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	27907	1	0	0.97	0.0302	0.2622	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.97	0.2924	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	4	22	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	18	0	0.59	1	0.0403	0.2218	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.59	1	0.2621	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TC	4	22	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0.2218	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCABER_URINARY_TRACT	1	1	0.2621	FALSE	462	80	0	856	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TN	9	2	MT-TA	1042	chrM:5614:-	MT-TN	4107	chrM:5692:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0907	0.0202	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCABER_URINARY_TRACT	1	1	0.1109	FALSE	369	2501	205	193	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	COX16--RNF113B	8	5	COX16	1213	chr14:70826236:-	RNF113B	11114	chr13:98828430:-	ONLY_REF_SPLICE	YES	430	3	0.03	0.81	0.0807	0.0504	COX16->COX16_cytochrome_c_oxidase_assembly_homolog,chr14:70791798-70826448:-,RNF113B->chr13:98828039-98829519:-,ring_finger_protein_113B	SCABER_URINARY_TRACT	0.03	0.81	0.1311	TRUE	0	0	0	1	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	8	5	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19735	17	0	0.43	0.0807	0.0504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.43	0.1311	FALSE	230	193	14	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	8	5	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	28699	727	0	0.02	0.0807	0.0504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.02	0.1311	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	6	13	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	NO	26890	2	0	0.9	0.0605	0.1311	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.9	0.1916	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	3	25	MT-ND4	1076	chrM:10835:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	NO	16	0	0.64	1	0.0302	0.2521	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.64	1	0.2823	FALSE	344	821	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	8	5	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	95	0	0.12	1	0.0807	0.0504	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.12	1	0.1311	FALSE	344	827	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TN	9	1	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0907	0.0101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCABER_URINARY_TRACT	1	1	0.1008	FALSE	369	2501	205	193	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND3--MT-TG	9	0	MT-ND3	1026	chrM:10084:+	MT-TG	4396	chrM:10040:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0907	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	SCABER_URINARY_TRACT	1	1	0.0907	FALSE	97	9	0	14	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	7	8	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	28324	138	0	0.1	0.0706	0.0807	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.1	0.1513	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	5	16	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	56	0	0.27	1	0.0504	0.1613	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.27	1	0.2117	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-CO3	5	16	MT-ND5	2607	chrM:13943:+	MT-CO3	6185	chrM:9579:+	INCL_NON_REF_SPLICE	YES	4364	22909	0	0	0.0504	0.1613	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SCABER_URINARY_TRACT	0	0	0.2117	FALSE	0	15	2	18	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RP11-123O10.4--GRIP1	8	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0807	0.0403	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SCABER_URINARY_TRACT	1	1	0.121	FALSE	416	2512	207	587	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RP11-603B24.1--HERC2P3	8	4	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.92	0.0807	0.0403	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	SCABER_URINARY_TRACT	0.92	1	0.121	TRUE	27	10	1	20	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND6--MT-TE	6	11	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0605	0.1109	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCABER_URINARY_TRACT	0.94	1	0.1714	FALSE	499	1288	110	792	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	4	18	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	27478	0	0	1	0.0403	0.1815	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	1	0.2218	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	6	10	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	30471	138	0	0.1	0.0605	0.1008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.1	0.1613	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	7	5	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	NO	19735	2	0	0.86	0.0706	0.0504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.86	0.121	FALSE	230	193	14	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-CO3	6	9	MT-ND5	1701	chrM:13037:+	MT-CO3	5822	chrM:9216:+	INCL_NON_REF_SPLICE	YES	5724	0	0	1	0.0605	0.0907	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SCABER_URINARY_TRACT	0	1	0.1512	FALSE	0	12	0	17	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	5	12	MT-ND5	2150	chrM:13486:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8045	140	0	0.11	0.0504	0.121	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.11	0.1714	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	3	20	MT-ND5	2290	chrM:13626:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4720	2	0	0.92	0.0302	0.2017	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.92	0.2319	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	3	20	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	4496	2	0.01	0.92	0.0302	0.2017	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0.01	0.92	0.2319	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	7	3	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11990	2	0	0.83	0.0706	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.83	0.1008	FALSE	230	193	14	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND6--MT-TE	4	15	MT-ND6	1111	chrM:14563:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0403	0.1512	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCABER_URINARY_TRACT	0.95	1	0.1915	FALSE	499	1288	110	792	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TC	3	19	MT-TA	1053	chrM:5603:-	MT-TC	4023	chrM:5873:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.1916	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCABER_URINARY_TRACT	1	1	0.2218	FALSE	462	80	0	856	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	5	10	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	29621	138	0	0.1	0.0504	0.1008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.1	0.1512	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	LRP11--RP11-287D1.3	7	1	LRP11	7724	chr6:150157221:-	RP11-287D1.3	49926	chr2:74443257:-	INCL_NON_REF_SPLICE	YES	55	4	0.13	0.67	0.0706	0.0101	LRP11->LDL_receptor_related_protein_11,chr6:150139934-150186199:-,RP11-287D1.3->chr2:74438731-74590504:-	SCABER_URINARY_TRACT	0.13	0.67	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	3	17	MT-ND4	1783	chrM:11542:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	NO	27574	0	0	1	0.0302	0.1714	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	1	0.2016	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	GPHN--MPP5	7	0	GPHN	5216	chr14:67147903:+	MPP5	41459	chr14:67736418:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0706	0	NEIGHBORS[59306],GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5	SCABER_URINARY_TRACT	1	1	0.0706	FALSE	0	0	0	1	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	3	16	MT-ND5	2288	chrM:13624:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	NO	4627	9	0	0.68	0.0302	0.1613	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.68	0.1915	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	3	15	MT-ND5	2748	chrM:14084:+	MT-ATP8	5948	chrM:8501:+	INCL_NON_REF_SPLICE	YES	1	1844	0.95	0.01	0.0302	0.1512	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0.01	0.95	0.1814	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	6	3	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8913	140	0	0.06	0.0605	0.0302	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.06	0.0907	FALSE	41	30	6	102	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	3	15	MT-ND5	2740	chrM:14076:+	MT-ATP8	5938	chrM:8491:+	INCL_NON_REF_SPLICE	YES	3	1370	0.86	0.01	0.0302	0.1512	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0.01	0.86	0.1814	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TC	4	11	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0.1109	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCABER_URINARY_TRACT	1	1	0.1512	FALSE	462	80	0	856	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND1--MT-RNR2	3	14	MT-ND1	1513	chrM:3819:+	MT-RNR2	4985	chrM:1699:+	INCL_NON_REF_SPLICE	YES	293	0	0.05	1	0.0302	0.1412	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SCABER_URINARY_TRACT	0.05	1	0.1714	FALSE	114	26	4	85	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	4	10	MT-ND4	1645	chrM:11404:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	29107	331	0	0.04	0.0403	0.1008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.04	0.1411	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RP11-680G10.1--GSE1	6	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	6	1	0.57	0.0605	0.0202	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SCABER_URINARY_TRACT	0.57	1	0.0807	TRUE	465	1949	224	605	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	3	13	MT-ND4	1747	chrM:11506:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	26691	1	0	0.94	0.0302	0.1311	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.94	0.1613	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	4	9	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	27437	2194	0	0.01	0.0403	0.0907	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.01	0.131	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-CO3	4	9	MT-ND5	2047	chrM:13383:+	MT-CO3	6033	chrM:9427:+	INCL_NON_REF_SPLICE	YES	7946	17487	0	0	0.0403	0.0907	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SCABER_URINARY_TRACT	0	0	0.131	FALSE	0	15	2	18	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TN	6	1	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0605	0.0101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCABER_URINARY_TRACT	1	1	0.0706	FALSE	369	2501	205	193	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RP5-857K21.11--MTATP6P1	5	5	RP5-857K21.11	1522	chr1:570277:+	MTATP6P1	4797	chr1:569325:+	INCL_NON_REF_SPLICE	NO	0	335	1	0.03	0.0504	0.0504	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SCABER_URINARY_TRACT	0.03	1	0.1008	TRUE	16	42	4	10	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	3	12	MT-ND4	1170	chrM:10929:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	45	0	0.25	1	0.0302	0.121	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.25	1	0.1512	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	5	4	MT-ND5	1627	chrM:12963:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	6436	1125	0	0.01	0.0504	0.0403	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.01	0.0907	FALSE	42	36	7	104	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0605	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCABER_URINARY_TRACT	1	1	0.0605	FALSE	499	1288	110	792	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0605	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCABER_URINARY_TRACT	1	1	0.0605	FALSE	499	1288	110	792	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	3	11	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	28256	2	0	0.88	0.0302	0.1109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.88	0.1411	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RP5-857K21.11--MTATP6P1	5	3	RP5-857K21.11	1220	chr1:569975:+	MTATP6P1	4682	chr1:569210:+	INCL_NON_REF_SPLICE	YES	7	127	0.53	0.06	0.0504	0.0302	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SCABER_URINARY_TRACT	0.06	0.53	0.0806	TRUE	16	42	4	10	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND3--MT-TG	5	2	MT-ND3	1063	chrM:10121:+	MT-TG	4390	chrM:10034:+	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0504	0.0202	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	SCABER_URINARY_TRACT	0.88	1	0.0706	FALSE	97	9	0	14	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	4	6	MT-ND4	1263	chrM:11022:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	22675	5	0	0.67	0.0403	0.0605	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.67	0.1008	FALSE	231	205	14	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	4	6	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	26986	2194	0	0	0.0403	0.0605	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0	0.1008	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	3	10	MT-ND4	1515	chrM:11274:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	29370	138	0	0.09	0.0302	0.1008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.09	0.131	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	3	10	MT-ND4	1754	chrM:11513:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	26890	193	0	0.06	0.0302	0.1008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.06	0.131	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	4	6	MT-ND4	1080	chrM:10839:+	MT-ND4L	5658	chrM:10749:+	INCL_NON_REF_SPLICE	YES	16	0	0.38	1	0.0403	0.0605	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.38	1	0.1008	FALSE	344	821	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-CO3	3	10	MT-ND5	2303	chrM:13639:+	MT-CO3	6178	chrM:9572:+	INCL_NON_REF_SPLICE	YES	4540	23121	0	0	0.0302	0.1008	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SCABER_URINARY_TRACT	0	0	0.131	FALSE	0	15	2	18	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	4	5	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	19763	0	0	1	0.0403	0.0504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	1	0.0907	FALSE	230	197	14	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-CO3	4	5	MT-ND5	1570	chrM:12906:+	MT-CO3	5959	chrM:9353:+	INCL_NON_REF_SPLICE	NO	6418	9900	0	0	0.0403	0.0504	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SCABER_URINARY_TRACT	0	0	0.0907	FALSE	0	7	0	11	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	3	8	MT-ND4	1441	chrM:11200:+	MT-ATP8	5482	chrM:8469:+	INCL_NON_REF_SPLICE	YES	28582	48	0	0.19	0.0302	0.0807	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.19	0.1109	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	4	4	MT-ND5	1570	chrM:12906:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	6418	17	0	0.32	0.0403	0.0403	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.32	0.0806	FALSE	42	36	7	104	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND1--MT-RNR2	3	7	MT-ND1	1778	chrM:4084:+	MT-RNR2	5565	chrM:2279:+	INCL_NON_REF_SPLICE	YES	1659	13130	0.01	0	0.0302	0.0706	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SCABER_URINARY_TRACT	0	0.01	0.1008	FALSE	120	26	5	87	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	4	3	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	11274	1	0	0.88	0.0403	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.88	0.0705	FALSE	230	193	14	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	3	7	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	27307	1201	0	0.01	0.0302	0.0706	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.01	0.1008	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	4	3	MT-ND4	1004	chrM:10763:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0403	0.0302	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.88	1	0.0705	FALSE	344	821	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	3	6	MT-ND5	1795	chrM:13131:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5199	2	0	0.82	0.0302	0.0605	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.82	0.0907	FALSE	43	37	8	105	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RP5-857K21.11--MTATP6P1	3	6	RP5-857K21.11	1220	chr1:569975:+	MTATP6P1	4502	chr1:569030:+	INCL_NON_REF_SPLICE	NO	7	0	0.56	1	0.0302	0.0605	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SCABER_URINARY_TRACT	0.56	1	0.0907	TRUE	16	42	4	10	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	C15orf57--CBX3	3	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	19	36	0.3	0.18	0.0302	0.0504	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SCABER_URINARY_TRACT	0.18	0.3	0.0806	TRUE	267	562	48	632	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	3	5	MT-ND4	1559	chrM:11318:+	MT-ATP8	5522	chrM:8509:+	INCL_NON_REF_SPLICE	YES	29519	2039	0	0	0.0302	0.0504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0	0.0806	FALSE	231	217	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	3	5	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	57	0	0.12	1	0.0302	0.0504	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.12	1	0.0806	FALSE	344	826	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	3	5	MT-ND5	1331	chrM:12667:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	9219	2	0	0.8	0.0302	0.0504	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.8	0.0806	FALSE	42	35	7	104	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RP5-857K21.11--MTATP6P1	4	1	RP5-857K21.11	1138	chr1:569893:+	MTATP6P1	4992	chr1:569520:+	INCL_NON_REF_SPLICE	YES	8	131	0.38	0.04	0.0403	0.0101	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SCABER_URINARY_TRACT	0.04	0.38	0.0504	TRUE	16	42	4	10	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	ZNF407--SYNJ1	4	1	ZNF407	7927	chr18:72353078:+	SYNJ1	40423	chr21:34051120:-	ONLY_REF_SPLICE	YES	4	3	0.56	0.62	0.0403	0.0101	ZNF407->chr18:72265106-72777627:+,zinc_finger_protein_407,SYNJ1->chr21:34001069-34100359:-,synaptojanin_1	SCABER_URINARY_TRACT	0.56	0.62	0.0504	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	MT-ND1--MT-RNR2	3	4	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	147	12035	0.05	0	0.0302	0.0403	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SCABER_URINARY_TRACT	0	0.05	0.0705	FALSE	120	26	5	87	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND5--MT-ATP8	3	4	MT-ND5	1639	chrM:12975:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	NO	6201	728	0	0.01	0.0302	0.0403	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.01	0.0705	FALSE	42	36	7	104	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	4	0	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0403	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SCABER_URINARY_TRACT	1	1	0.0403	FALSE	467	2173	244	435	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RP5-857K21.11--MTATP6P1	4	0	RP5-857K21.11	1028	chr1:569783:+	MTATP6P1	5197	chr1:569725:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SCABER_URINARY_TRACT	1	1	0.0403	TRUE	16	42	4	10	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND1--MT-RNR2	3	3	MT-ND1	1015	chrM:3321:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	YES	0	207	1	0.03	0.0302	0.0302	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SCABER_URINARY_TRACT	0.03	1	0.0604	FALSE	92	22	4	61	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	3	3	MT-ND4	1110	chrM:10869:+	MT-ATP8	5419	chrM:8406:+	INCL_NON_REF_SPLICE	YES	11808	0	0	1	0.0302	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	1	0.0604	FALSE	230	193	14	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1056	chrM:10815:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	6624	785	0	0.01	0.0302	0.0202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0.01	0.0504	FALSE	230	192	14	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1338	chrM:11097:+	MT-ATP8	5531	chrM:8518:+	INCL_NON_REF_SPLICE	YES	27214	2220	0	0	0.0302	0.0202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCABER_URINARY_TRACT	0	0	0.0504	FALSE	231	215	16	283	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	3	2	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	10	0	0.33	1	0.0302	0.0202	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.33	1	0.0504	FALSE	344	821	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	3	2	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	NO	10	0	0.33	1	0.0302	0.0202	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.33	1	0.0504	FALSE	344	821	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	3	1	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	3	0	0.57	1	0.0302	0.0101	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	0.57	1	0.0403	FALSE	344	821	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MT-TA--MT-TN	3	1	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.0101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCABER_URINARY_TRACT	1	1	0.0403	FALSE	369	2501	205	193	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RP5-857K21.11--MTATP6P1	3	1	RP5-857K21.11	1115	chr1:569870:+	MTATP6P1	4836	chr1:569364:+	INCL_NON_REF_SPLICE	YES	3	285	0.57	0.01	0.0302	0.0101	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SCABER_URINARY_TRACT	0.01	0.57	0.0403	FALSE	16	42	4	10	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	F3--SPG7	3	0	F3	1264	chr1:95007093:-	SPG7	29909	chr16:89611056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Head-Neck=2,Breast=1},F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SCABER_URINARY_TRACT	1	1	0.0302	TRUE	0	0	0	8	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	HEPHL1--RBM15	3	0	HEPHL1	4426	chr11:93797676:+	RBM15	31610	chr1:110888930:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	HEPHL1->chr11:93754527-93846917:+,hephaestin_like_1,RBM15->Oncogene{Bushman},RNA_binding_motif_protein_15,chr1:110881128-110889299:+	SCABER_URINARY_TRACT	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCABER_URINARY_TRACT	1	1	0.0302	FALSE	344	821	44	306	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	SCABER_URINARY_TRACT	1	1	0.0302	TRUE	22	156	2	142	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RTN4--VRK2	3	0	RTN4	6560	chr2:55276881:-	VRK2	31549	chr2:58275962:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,VRK2->chr2:58134786-58387055:+,vaccinia_related_kinase_2	SCABER_URINARY_TRACT	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	hsa-mir-490--DGKI	3	0	hsa-mir-490	1500	chr7:136866355:-	DGKI	49420	chr7:137237314:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	hsa-mir-490->chr7:136370306-136866854:-,DGKI->chr7:137065783-137531838:-,diacylglycerol_kinase_iota	SCABER_URINARY_TRACT	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	RP11-680G10.1--GSE1	2	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.67	0.0202	0.0202	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SCABER_URINARY_TRACT	0.67	1	0.0404	TRUE	458	1351	185	561	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0202	0.0202	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SCABER_URINARY_TRACT	0.8	1	0.0404	FALSE	407	2205	196	549	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	AC002066.1--CAV1	2	1	AC002066.1	1112	chr7:116139408:-	CAV1	14768	chr7:116199000:+	ONLY_REF_SPLICE	YES	4	3013	0.43	0	0.0202	0.0101	LOCAL_INVERSION:-:+:[25320],AC002066.1->chr7:115878314-116139519:-,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	SCABER_URINARY_TRACT	0	0.43	0.0303	FALSE	0	0	1	6	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	IFI44L--MIR205HG	2	1	IFI44L	1650	chr1:79086256:+	MIR205HG	21129	chr1:209602526:+	ONLY_REF_SPLICE	YES	70	564	0.04	0.01	0.0202	0.0101	IFI44L->chr1:79085607-79111830:+,interferon_induced_protein_44_like,MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+	SCABER_URINARY_TRACT	0.01	0.04	0.0303	FALSE	0	0	0	1	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	LRP11--RP11-287D1.3	2	1	LRP11	7724	chr6:150157221:-	RP11-287D1.3	50974	chr2:74441602:-	ONLY_REF_SPLICE	YES	55	1	0.05	0.75	0.0202	0.0101	LRP11->LDL_receptor_related_protein_11,chr6:150139934-150186199:-,RP11-287D1.3->chr2:74438731-74590504:-	SCABER_URINARY_TRACT	0.05	0.75	0.0303	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	ARPC4--BIRC5	2	0	ARPC4	5664	chr3:9843440:+	BIRC5	17094	chr17:76219546:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	ARPC4->actin_related_protein_2/3_complex_subunit_4,chr3:9834179-9849410:+,BIRC5->baculoviral_IAP_repeat_containing_5,chr17:76210267-76221717:+	SCABER_URINARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	C17orf76-AS1--ANXA2	2	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	SCABER_URINARY_TRACT	1	1	0.0202	TRUE	0	0	0	10	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	FER--GPBP1	2	0	FER	1179	chr5:108083701:+	GPBP1	47058	chr5:56526925:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	FER->FER_tyrosine_kinase,chr5:108083523-108532542:+,GPBP1->GC-rich_promoter_binding_protein_1,chr5:56469775-56560506:+	SCABER_URINARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	HNRNPA2B1--IVNS1ABP	2	0	HNRNPA2B1	1958	chr7:26240192:-	IVNS1ABP	21060	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	SCABER_URINARY_TRACT	1	1	0.0202	TRUE	0	0	0	4	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	NRIP1--AF127936.7	2	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCABER_URINARY_TRACT	1	1	0.0202	FALSE	164	806	69	479	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCABER_URINARY_TRACT	1	1	0.0202	FALSE	125	705	46	456	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	PLXNA1--INF2	2	0	PLXNA1	3377	chr3:126710409:+	INF2	33208	chr14:105167694:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	PLXNA1->chr3:126707437-126756235:+,plexin_A1,INF2->chr14:105155943-105185942:+,inverted_formin,_FH2_and_WH2_domain_containing	SCABER_URINARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	RP11-123O10.4--GRIP1	1	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0101	0.0403	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SCABER_URINARY_TRACT	1	1	0.0504	FALSE	9	21	5	22	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SCABER_URINARY_TRACT	1	1	0.0202	FALSE	515	4851	409	746	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	TRAF3--PPAP2A	2	0	TRAF3	4544	chr14:103296809:+	PPAP2A	33251	chr5:54721867:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+,PPAP2A->chr5:54720682-54830878:-	SCABER_URINARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000839
SCABER_URINARY_TRACT	CDH13--RP11-22H5.2	1	2	CDH13	1335	chr16:82660742:+	RP11-22H5.2	37471	chr16:82856817:+	ONLY_REF_SPLICE	NO	86	0	0.03	1	0.0101	0.0202	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	SCABER_URINARY_TRACT	0.03	1	0.0303	FALSE	0	1	0	7	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	CDH13--RP11-22H5.2	1	2	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	86	0	0.03	1	0.0101	0.0202	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	SCABER_URINARY_TRACT	0.03	1	0.0303	FALSE	14	31	0	36	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RP11-114H23.1--RP11-114H23.2	1	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0101	0.0202	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SCABER_URINARY_TRACT	0.6	1	0.0303	FALSE	81	155	12	160	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0101	0.0202	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SCABER_URINARY_TRACT	0.75	1	0.0303	FALSE	275	511	55	178	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0101	0.0202	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SCABER_URINARY_TRACT	1	1	0.0303	FALSE	76	45	6	15	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	AC002066.1--CAV1	1	1	AC002066.1	2203	chr7:116122867:-	CAV1	14768	chr7:116199000:+	ONLY_REF_SPLICE	YES	2	3013	0.5	0	0.0101	0.0101	LOCAL_INVERSION:-:+:[25320],AC002066.1->chr7:115878314-116139519:-,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	SCABER_URINARY_TRACT	0	0.5	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	AC002066.1--CAV1	1	1	AC002066.1	3291	chr7:116105243:-	CAV1	14768	chr7:116199000:+	ONLY_REF_SPLICE	YES	2	3013	0.5	0	0.0101	0.0101	LOCAL_INVERSION:-:+:[25320],AC002066.1->chr7:115878314-116139519:-,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	SCABER_URINARY_TRACT	0	0.5	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	ARL15--NDUFS4	1	1	ARL15	5950	chr5:53409032:-	NDUFS4	18000	chr5:52942063:+	ONLY_REF_SPLICE	YES	11	269	0.15	0.01	0.0101	0.0101	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	SCABER_URINARY_TRACT	0.01	0.15	0.0202	FALSE	5	61	2	9	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	EPB41L4A-AS1--GARS	1	1	EPB41L4A-AS1	1770	chr5:111496992:+	GARS	22841	chr7:30665850:+	ONLY_REF_SPLICE	YES	20	318	0.09	0.01	0.0101	0.0101	EPB41L4A-AS1->EPB41L4A_antisense_RNA_1,chr5:111496223-111499973:+,GARS->chr7:30634297-30673649:+,glycyl-tRNA_synthetase	SCABER_URINARY_TRACT	0.01	0.09	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	FAT2--C9orf3	1	1	FAT2	12371	chr5:150928856:-	C9orf3	76517	chr9:97848964:+	ONLY_REF_SPLICE	YES	46	107	0.04	0.02	0.0101	0.0101	FAT2->FAT_atypical_cadherin_2,Oncogene{Bushman},chr5:150883654-150948505:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SCABER_URINARY_TRACT	0.02	0.04	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	IL1RAP--CCDC50	1	1	IL1RAP	19394	chr3:190347287:+	CCDC50	34471	chr3:191074877:+	ONLY_REF_SPLICE	YES	69	38	0.03	0.05	0.0101	0.0101	IL1RAP->chr3:190231840-190375843:+,interleukin_1_receptor_accessory_protein,CCDC50->chr3:191046866-191116459:+,coiled-coil_domain_containing_50	SCABER_URINARY_TRACT	0.03	0.05	0.0202	TRUE	0	0	0	2	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	MATR3--PHF14	1	1	MATR3	3802	chr5:138614097:+	PHF14	58321	chr7:11150977:+	ONLY_REF_SPLICE	YES	56	38	0.03	0.05	0.0101	0.0101	MATR3->chr5:138609441-138667360:+,matrin_3,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SCABER_URINARY_TRACT	0.03	0.05	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	PRKCH--HIF1A	1	1	PRKCH	27174	chr14:61952374:+	HIF1A	45882	chr14:62187100:+	ONLY_REF_SPLICE	YES	74	573	0.03	0	0.0101	0.0101	PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	SCABER_URINARY_TRACT	0	0.03	0.0202	FALSE	0	3	0	5	0	FALSE	ACH-000839
SCABER_URINARY_TRACT	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0101	0.0101	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SCABER_URINARY_TRACT	1	1	0.0202	FALSE	93	270	15	244	0	FALSE	ACH-000839
KM12_LARGE_INTESTINE	TPM3--NTRK1	233	129	TPM3	12356	chr1:154142876:-	NTRK1	34364	chr1:156844363:+	ONLY_REF_SPLICE	YES	419	8	0.46	0.98	2.3592	1.3062	Cosmic{samples=629,mutations=32,papers=32},chimerdb_pubmed{Thyroid carcinoma},{Klijn_CCL:Colo-Rectal=1},TPM3->Oncogene{Bushman},chr1:154127784-154167124:-,tropomyosin_3,NTRK1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:156785432-156851642:+,neurotrophic_receptor_tyrosine_kinase_1	KM12_LARGE_INTESTINE	0.46	0.98	3.6654	TRUE	0	1	0	1	1	TRUE	ACH-000969
KM12_LARGE_INTESTINE	TPM3--NTRK1	125	147	TPM3	13451	chr1:154141781:-	NTRK1	34364	chr1:156844363:+	ONLY_REF_SPLICE	YES	440	8	0.38	0.97	1.2657	1.4884	Cosmic{samples=629,mutations=32,papers=32},chimerdb_pubmed{Thyroid carcinoma},{Klijn_CCL:Colo-Rectal=1},TPM3->Oncogene{Bushman},chr1:154127784-154167124:-,tropomyosin_3,NTRK1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:156785432-156851642:+,neurotrophic_receptor_tyrosine_kinase_1	KM12_LARGE_INTESTINE	0.38	0.97	2.7541	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	TIMM23B--LINC00843	144	47	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.4581	0.4759	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KM12_LARGE_INTESTINE	0.99	1	1.934	TRUE	508	994	45	981	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-TA--MT-TN	145	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4682	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KM12_LARGE_INTESTINE	1	1	1.4682	FALSE	369	2501	205	193	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	TIMM23--RP11-464F9.1	83	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	161	5	0.35	0.95	0.8404	0.0405	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KM12_LARGE_INTESTINE	0.35	0.95	0.8809	TRUE	519	3926	326	965	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-TA--MT-TC	60	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6075	0.0405	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KM12_LARGE_INTESTINE	1	1	0.648	FALSE	462	80	0	856	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	49	35	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4961	0.3544	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	KM12_LARGE_INTESTINE	1	1	0.8505	FALSE	81	155	12	160	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	RNF125--RPRD1A	45	20	RNF125	4261	chr18:29622236:+	RPRD1A	27397	chr18:33573263:-	ONLY_REF_SPLICE	YES	7	75	0.9	0.46	0.4556	0.2025	RNF125->chr18:29598335-29653176:+,ring_finger_protein_125,_E3_ubiquitin_protein_ligase,RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A	KM12_LARGE_INTESTINE	0.46	0.9	0.6581	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	ZNF654--HMGB2	39	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3949	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KM12_LARGE_INTESTINE	1	1	0.3949	TRUE	0	0	0	518	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-TA--MT-TN	16	61	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.162	0.6177	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KM12_LARGE_INTESTINE	1	1	0.7797	FALSE	369	2501	205	193	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	TPM3--NTRK1	2	95	TPM3	12356	chr1:154142876:-	NTRK1	34699	chr1:156844698:+	ONLY_REF_SPLICE	YES	419	11	0.19	0.9	0.0203	0.9619	Cosmic{samples=629,mutations=32,papers=32},chimerdb_pubmed{Thyroid carcinoma},{Klijn_CCL:Colo-Rectal=1},TPM3->Oncogene{Bushman},chr1:154127784-154167124:-,tropomyosin_3,NTRK1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:156785432-156851642:+,neurotrophic_receptor_tyrosine_kinase_1	KM12_LARGE_INTESTINE	0.19	0.9	0.9822	TRUE	0	1	0	1	1	TRUE	ACH-000969
KM12_LARGE_INTESTINE	MT-ND6--MT-TE	24	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.243	0.0608	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KM12_LARGE_INTESTINE	1	1	0.3038	FALSE	499	1288	110	792	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	88	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	6	1	0.94	0.99	0.0304	0.891	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KM12_LARGE_INTESTINE	0.94	0.99	0.9214	FALSE	344	826	44	306	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-TA--MT-TN	17	19	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1721	0.1924	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KM12_LARGE_INTESTINE	1	1	0.3645	FALSE	369	2501	205	193	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	69	MT-ND4	1475	chrM:11234:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	190	0	0.27	1	0.0304	0.6987	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KM12_LARGE_INTESTINE	0.27	1	0.7291	FALSE	344	827	44	306	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-TA--MT-TN	6	51	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0608	0.5164	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KM12_LARGE_INTESTINE	1	1	0.5772	FALSE	369	2501	205	193	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-TA--MT-TC	17	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1721	0.0304	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KM12_LARGE_INTESTINE	1	1	0.2025	FALSE	462	80	0	856	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	57	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	NO	4	0	0.94	1	0.0304	0.5772	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KM12_LARGE_INTESTINE	0.94	1	0.6076	FALSE	344	821	44	306	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-TA--MT-TN	3	57	MT-TA	1055	chrM:5601:-	MT-TN	3986	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0304	0.5772	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KM12_LARGE_INTESTINE	1	1	0.6076	FALSE	369	2501	205	193	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-ND6--MT-TE	15	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1519	0.0608	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KM12_LARGE_INTESTINE	1	1	0.2127	FALSE	499	1288	110	792	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-TA--MT-TN	6	40	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0608	0.405	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KM12_LARGE_INTESTINE	1	1	0.4658	FALSE	369	2501	205	193	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-ND6--MT-TE	10	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	10	0	0.67	1	0.1013	0.1013	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KM12_LARGE_INTESTINE	0.67	1	0.2026	FALSE	499	1288	110	792	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-TA--MT-TN	11	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1114	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KM12_LARGE_INTESTINE	1	1	0.1114	FALSE	369	2501	205	193	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	6	20	RP11-114H23.1	1242	chr12:76377554:-	RP11-114H23.2	12403	chr12:76088755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0608	0.2025	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	KM12_LARGE_INTESTINE	1	1	0.2633	FALSE	81	155	12	160	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	2	35	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0.3544	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	KM12_LARGE_INTESTINE	1	1	0.3747	FALSE	5	9	0	20	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-ND6--MT-TE	7	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0709	0.1316	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KM12_LARGE_INTESTINE	1	1	0.2025	FALSE	499	1288	110	792	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	4	24	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0.243	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	KM12_LARGE_INTESTINE	1	1	0.2835	FALSE	81	155	12	160	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	19	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	372	0	0.06	1	0.0506	0.1924	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KM12_LARGE_INTESTINE	0.06	1	0.243	FALSE	344	827	44	306	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-TA--MT-TN	5	18	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0.1823	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KM12_LARGE_INTESTINE	1	1	0.2329	FALSE	369	2501	205	193	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	C15orf57--CBX3	7	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	73	19	0.17	0.44	0.0709	0.081	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KM12_LARGE_INTESTINE	0.17	0.44	0.1519	TRUE	267	562	48	632	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	16	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	8	0	0.72	1	0.0506	0.162	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KM12_LARGE_INTESTINE	0.72	1	0.2126	FALSE	344	826	44	306	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-TA--MT-TC	7	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0709	0.0506	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KM12_LARGE_INTESTINE	1	1	0.1215	FALSE	462	80	0	856	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.081	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KM12_LARGE_INTESTINE	1	1	0.081	FALSE	462	80	0	856	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-ND6--MT-TE	3	19	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	10	0	0.69	1	0.0304	0.1924	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KM12_LARGE_INTESTINE	0.69	1	0.2228	FALSE	499	1288	110	792	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	JSRP1--RPS28	7	0	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0709	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KM12_LARGE_INTESTINE	1	1	0.0709	TRUE	0	1	0	84	1	FALSE	ACH-000969
KM12_LARGE_INTESTINE	BRI3BP--UBC	6	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0608	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	KM12_LARGE_INTESTINE	1	1	0.0608	TRUE	5	99	5	34	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-ND6--MT-TE	3	12	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0304	0.1215	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KM12_LARGE_INTESTINE	0.88	1	0.1519	FALSE	499	1288	110	792	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	5	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0506	0.0304	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KM12_LARGE_INTESTINE	0.89	1	0.081	FALSE	515	4851	409	746	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	RP11-123O10.4--GRIP1	5	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0506	0.0101	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KM12_LARGE_INTESTINE	1	1	0.0607	FALSE	416	2512	207	587	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	HSPBP1--GRK5	5	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KM12_LARGE_INTESTINE	1	1	0.0506	TRUE	1	39	0	134	39	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-TA--MT-TN	5	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KM12_LARGE_INTESTINE	1	1	0.0506	FALSE	369	2501	205	193	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	EMC2--EIF3E	4	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0405	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	KM12_LARGE_INTESTINE	1	1	0.0405	TRUE	0	0	0	12	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KM12_LARGE_INTESTINE	1	1	0.0405	FALSE	499	1288	110	792	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KM12_LARGE_INTESTINE	1	1	0.0405	FALSE	369	2501	205	193	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	PLIN1--PPP1R15A	4	0	PLIN1	8249	chr15:90210864:-	PPP1R15A	16589	chr19:49377720:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	GTEx&tcga_normals:8/3694=0.22%,GTEx_FI:{Brain=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},GTEx_v2:{count=3;pct=0.03%;dist=Adipose_-_Subcutaneous=2,Adipose_-_Visceral_(Omentum)=1},PLIN1->chr15:90207596-90222658:-,perilipin_1,PPP1R15A->chr19:49375649-49379314:+,protein_phosphatase_1_regulatory_subunit_15A	KM12_LARGE_INTESTINE	1	1	0.0405	TRUE	3	0	0	1	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	2	MT-ND4	1008	chrM:10767:+	MT-ND4L	5567	chrM:10658:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0304	0.0203	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KM12_LARGE_INTESTINE	0.83	1	0.0507	FALSE	344	821	44	306	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	G3BP1--CTD-2410N18.5	3	0	G3BP1	1992	chr5:151151597:+	CTD-2410N18.5	27988	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTD-2410N18.5->chr5:133502861-133561762:-	KM12_LARGE_INTESTINE	1	1	0.0304	TRUE	0	0	0	4	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	JSRP1--RPS28	3	0	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KM12_LARGE_INTESTINE	1	1	0.0304	TRUE	0	1	0	84	1	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KM12_LARGE_INTESTINE	1	1	0.0304	FALSE	344	821	44	306	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KM12_LARGE_INTESTINE	1	1	0.0304	FALSE	499	1288	110	792	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KM12_LARGE_INTESTINE	1	1	0.0304	FALSE	499	1288	110	792	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	MT-TA--MT-TN	3	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KM12_LARGE_INTESTINE	1	1	0.0304	FALSE	369	2501	205	193	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	RP11-573D15.9--RP11-773H22.2	3	0	RP11-573D15.9	1588	chr3:186501381:-	RP11-773H22.2	6412	chr18:12912854:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	RP11-573D15.9->chr3:186499569-186501968:-,RP11-773H22.2->chr18:12912843-12913905:+	KM12_LARGE_INTESTINE	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	CLIC1--RPL7	2	2	CLIC1	4985	chr6:31701613:-	RPL7	14663	chr8:74203896:-	ONLY_REF_SPLICE	YES	1576	4686	0	0	0.0203	0.0203	CLIC1->chloride_intracellular_channel_1,chr6:31698358-31707540:-,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	KM12_LARGE_INTESTINE	0	0	0.0406	FALSE	0	0	0	12	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	CTD-2337A12.1--CAST	2	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	41	1	0.07	0.0203	0.0101	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	KM12_LARGE_INTESTINE	0.07	1	0.0304	TRUE	347	1186	183	220	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	ARHGEF38--PPA2	2	0	ARHGEF38	1342	chr4:106474118:+	PPA2	32366	chr4:106377902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=2;pct=0.02%;dist=Small_Intestine_-_Terminal_Ileum=1,Pancreas=1},LOCAL_INVERSION:+:-:[78539],ARHGEF38->Rho_guanine_nucleotide_exchange_factor_38,chr4:106473777-106629250:+,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	KM12_LARGE_INTESTINE	1	1	0.0203	TRUE	0	4	1	2	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	ARHGEF4--HS6ST1	2	0	ARHGEF4	1077	chr2:131594565:+	HS6ST1	28405	chr2:129026444:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ARHGEF4->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_4,chr2:131594489-131804836:+,HS6ST1->chr2:128994290-129076151:-,heparan_sulfate_6-O-sulfotransferase_1	KM12_LARGE_INTESTINE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	ELF1--SLC25A15	2	0	ELF1	1603	chr13:41634974:-	SLC25A15	19622	chr13:41373193:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-,SLC25A15->chr13:41363548-41384247:+,solute_carrier_family_25_member_15	KM12_LARGE_INTESTINE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	KIF18B--RER1	2	0	KIF18B	1087	chr17:43024996:-	RER1	18915	chr1:2327223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	KIF18B->chr17:43002077-43025082:-,kinesin_family_member_18B,RER1->chr1:2323267-2336883:+,retention_in_endoplasmic_reticulum_sorting_receptor_1	KM12_LARGE_INTESTINE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	METTL5--PPP2R2A	2	0	METTL5	4799	chr2:170676071:-	PPP2R2A	21240	chr8:26211984:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	METTL5->chr2:170666591-170681441:-,methyltransferase_like_5,PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha	KM12_LARGE_INTESTINE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	MIPEPP3--ZDHHC20	2	0	MIPEPP3	2501	chr13:21875757:+	ZDHHC20	8997	chr13:21999817:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_INVERSION:+:-:[69751],MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ZDHHC20->chr13:21950263-22033509:-,zinc_finger_DHHC-type_containing_20	KM12_LARGE_INTESTINE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	NDUFA7--GPKOW	2	0	NDUFA7	1540	chr19:8385741:-	GPKOW	17410	chrX:48970876:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	NDUFA7->NADH:ubiquinone_oxidoreductase_subunit_A7,chr19:8373167-8386263:-,chr19:8373490-8386280:-,GPKOW->G-patch_domain_and_KOW_motifs,chrX:48970334-48980151:-	KM12_LARGE_INTESTINE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	KM12_LARGE_INTESTINE	1	1	0.0203	FALSE	46	201	11	112	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.83	1	0.0101	0.0405	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KM12_LARGE_INTESTINE	0.83	1	0.0506	FALSE	407	2205	196	549	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	SETD5--CTNNB1	2	0	SETD5	1363	chr3:9439661:+	CTNNB1	46952	chr3:41274832:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	SETD5->SET_domain_containing_5,chr3:9439299-9520924:+,CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+	KM12_LARGE_INTESTINE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000969
KM12_LARGE_INTESTINE	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	2	1	0.6	0.0101	0.0203	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KM12_LARGE_INTESTINE	0.6	1	0.0304	TRUE	62	24	1	171	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	1812	91	0	0.03	0.0101	0.0203	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	KM12_LARGE_INTESTINE	0	0.03	0.0304	FALSE	6	50	7	115	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	ADAP1--GET4	1	1	ADAP1	9672	chr7:959605:-	GET4	25015	chr7:925693:+	ONLY_REF_SPLICE	YES	262	69	0.01	0.03	0.0101	0.0101	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=5;pct=0.06%;dist=Small_Intestine_-_Terminal_Ileum=1,Nerve_-_Tibial=1,Whole_Blood=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[1467],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	KM12_LARGE_INTESTINE	0.01	0.03	0.0202	FALSE	1	1	0	4	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	ATL2--HNRNPLL	1	1	ATL2	6688	chr2:38570410:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	NO	113	174	0.02	0.01	0.0101	0.0101	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	KM12_LARGE_INTESTINE	0.01	0.02	0.0202	FALSE	0	5	0	8	2	FALSE	ACH-000969
KM12_LARGE_INTESTINE	BCL2L13--VDAC1	1	1	BCL2L13	4107	chr22:18138598:+	VDAC1	24897	chr5:133326845:-	ONLY_REF_SPLICE	YES	106	465	0.02	0	0.0101	0.0101	BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,VDAC1->chr5:133307606-133340824:-,voltage_dependent_anion_channel_1	KM12_LARGE_INTESTINE	0	0.02	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	C14orf37--PSMA3	1	1	C14orf37	2258	chr14:58758353:-	PSMA3	25575	chr14:58724463:+	ONLY_REF_SPLICE	YES	0	594	1	0	0.0101	0.0101	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	KM12_LARGE_INTESTINE	0	1	0.0202	FALSE	0	0	0	2	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	EMG1--C9orf3	1	1	EMG1	1104	chr12:7072511:+	C9orf3	48795	chr9:97848212:+	ONLY_REF_SPLICE	YES	0	213	1	0.01	0.0101	0.0101	EMG1->EMG1_N1-specific_pseudouridine_methyltransferase,chr12:7072408-7105520:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	KM12_LARGE_INTESTINE	0.01	1	0.0202	FALSE	0	9	0	2	3	FALSE	ACH-000969
KM12_LARGE_INTESTINE	ERRFI1--PARK7	1	1	ERRFI1	1151	chr1:8086218:-	PARK7	19130	chr1:8044954:+	ONLY_REF_SPLICE	YES	470	1036	0	0	0.0101	0.0101	LOCAL_INVERSION:-:+:[18899],ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-,PARK7->Parkinsonism_associated_deglycase,chr1:8014351-8045565:+	KM12_LARGE_INTESTINE	0	0	0.0202	FALSE	0	1	0	1	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	SCAPER--ETFA	1	1	SCAPER	7921	chr15:77134075:-	ETFA	54278	chr15:76588078:-	ONLY_REF_SPLICE	YES	13	617	0.13	0	0.0101	0.0101	NEIGHBORS[36713],SCAPER->S-phase_cyclin_A-associated_protein_in_the_ER,chr15:76640526-77197785:-,ETFA->chr15:76507696-76603813:-,electron_transfer_flavoprotein_alpha_subunit	KM12_LARGE_INTESTINE	0	0.13	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000969
KM12_LARGE_INTESTINE	SNHG5--ALCAM	1	1	SNHG5	1780	chr6:86387672:-	ALCAM	14020	chr3:105238911:+	ONLY_REF_SPLICE	YES	3007	132	0	0.01	0.0101	0.0101	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,ALCAM->activated_leukocyte_cell_adhesion_molecule,chr3:105085753-105295744:+	KM12_LARGE_INTESTINE	0	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000969
NCIH1734_LUNG	FAM60A--DPF3	202	16	FAM60A	2035	chr12:31478958:-	DPF3	25883	chr14:73238601:-	ONLY_REF_SPLICE	YES	40	0	0.84	1	1.7624	0.1396	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,DPF3->chr14:73086004-73360809:-,double_PHD_fingers_3	NCIH1734_LUNG	0.84	1	1.902	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	C2CD5--PKP2	97	30	C2CD5	7576	chr12:22676360:-	PKP2	50908	chr12:32949232:-	ONLY_REF_SPLICE	YES	42	5	0.75	0.96	0.8463	0.2617	C2CD5->C2_calcium-dependent_domain_containing_5,chr12:22601517-22697480:-,PKP2->chr12:32943679-33049774:-,plakophilin_2	NCIH1734_LUNG	0.75	0.96	1.108	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	TIMM23B--LINC00843	91	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7939	0.1745	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1734_LUNG	1	1	0.9684	TRUE	508	994	45	981	0	FALSE	ACH-000675
NCIH1734_LUNG	IGSF9B--DPF3	83	17	IGSF9B	1295	chr11:133826586:-	DPF3	36463	chr14:73238601:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.7241	0.1483	IGSF9B->chr11:133778459-133826880:-,immunoglobulin_superfamily_member_9B,DPF3->chr14:73086004-73360809:-,double_PHD_fingers_3	NCIH1734_LUNG	1	1	0.8724	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MRC2--MAP3K3	78	20	MRC2	1520	chr17:60705281:+	MAP3K3	26051	chr17:61710041:+	ONLY_REF_SPLICE	YES	107	4	0.48	0.96	0.6805	0.1745	{Klijn_CCL:Lung=1},MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2,MAP3K3->chr17:61699775-61773663:+,mitogen-activated_protein_kinase_kinase_kinase_3	NCIH1734_LUNG	0.48	0.96	0.855	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MED13--MARCH10	43	26	MED13	9824	chr17:60106902:-	MARCH10	43835	chr17:60879113:-	ONLY_REF_SPLICE	YES	164	0	0.3	1	0.3752	0.2268	MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,MARCH10->chr17:60778675-60885705:-,membrane_associated_ring-CH-type_finger_10	NCIH1734_LUNG	0.3	1	0.602	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	TIMM23--RP11-464F9.1	48	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	203	1	0.19	0.98	0.4188	0.0087	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1734_LUNG	0.19	0.98	0.4275	TRUE	519	3926	326	965	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-ND4--MT-ND4L	6	156	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	14	0	0.92	1	0.0523	1.361	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1734_LUNG	0.92	1	1.4133	FALSE	344	826	44	306	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-ND6--MT-TE	40	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.349	0.0262	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1734_LUNG	1	1	0.3752	FALSE	499	1288	110	792	0	FALSE	ACH-000675
NCIH1734_LUNG	ZNF654--HMGB2	40	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.349	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1734_LUNG	1	1	0.349	TRUE	0	0	0	518	0	FALSE	ACH-000675
NCIH1734_LUNG	UVRAG--POLD3	38	6	UVRAG	15547	chr11:75694557:+	POLD3	39822	chr11:74329582:+	ONLY_REF_SPLICE	YES	12	60	0.79	0.42	0.3315	0.0523	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,POLD3->chr11:74204896-74380162:+,polymerase_(DNA)_delta_3,_accessory_subunit	NCIH1734_LUNG	0.42	0.79	0.3838	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	NDRG3--RBL1	31	15	NDRG3	9858	chr20:35309219:-	RBL1	33345	chr20:35675593:-	ONLY_REF_SPLICE	YES	57	32	0.45	0.59	0.2705	0.1309	NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-,RBL1->Oncogene{Bushman},chr20:35624752-35724398:-,chr20:35724188-35725581:+,retinoblastoma-like_1	NCIH1734_LUNG	0.45	0.59	0.4014	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MT-ND4--MT-ND4L	5	110	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	2	0.97	0.98	0.0436	0.9597	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1734_LUNG	0.97	0.98	1.0033	FALSE	344	821	44	306	0	FALSE	ACH-000675
NCIH1734_LUNG	FAM60A--DPF3	26	19	FAM60A	4052	chr12:31476878:-	DPF3	25883	chr14:73238601:-	ONLY_REF_SPLICE	YES	80	0	0.36	1	0.2268	0.1658	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,DPF3->chr14:73086004-73360809:-,double_PHD_fingers_3	NCIH1734_LUNG	0.36	1	0.3926	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MT-ND4--MT-ND4L	4	105	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	22	0	0.83	1	0.0349	0.9161	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1734_LUNG	0.83	1	0.951	FALSE	344	827	44	306	0	FALSE	ACH-000675
NCIH1734_LUNG	SMPDL3A--TNIK	25	10	SMPDL3A	3581	chr6:123118113:+	TNIK	16915	chr3:170946010:-	ONLY_REF_SPLICE	YES	31	7	0.53	0.83	0.2181	0.0872	{Klijn_CCL:Lung=1},SMPDL3A->chr6:123110315-123130865:+,sphingomyelin_phosphodiesterase_acid_like_3A,TNIK->TRAF2_and_NCK_interacting_kinase,chr3:170779128-171178197:-	NCIH1734_LUNG	0.53	0.83	0.3053	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	TEKT4P2--ASXL3	24	4	TEKT4P2	2129	chr21:9966322:-	ASXL3	22387	chr18:31241580:+	ONLY_REF_SPLICE	YES	5	0	0.85	1	0.2094	0.0349	TEKT4P2->chr21:9907190-9968585:-,tektin_4_pseudogene_2,ASXL3->additional_sex_combs_like_3,_transcriptional_regulator,chr18:31158579-31331156:+	NCIH1734_LUNG	0.85	1	0.2443	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MT-ND4--MT-ND4L	11	35	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	7462	0	0.01	1	0.096	0.3054	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1734_LUNG	0.01	1	0.4014	FALSE	328	800	43	304	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-ND6--MT-TE	19	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1658	0.0262	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1734_LUNG	1	1	0.192	FALSE	499	1288	110	792	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-ND6--MT-TE	16	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.1396	0.1134	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1734_LUNG	0.88	1	0.253	FALSE	499	1288	110	792	0	FALSE	ACH-000675
NCIH1734_LUNG	OR51S1--TP53I11	18	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.157	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH1734_LUNG	1	1	0.157	TRUE	402	216	10	229	0	FALSE	ACH-000675
NCIH1734_LUNG	RP11-129M6.1--RP11-662J14.1	17	2	RP11-129M6.1	3159	chr14:41443595:+	RP11-662J14.1	7647	chr14:40855456:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1483	0.0174	RP11-129M6.1->chr14:41424103-41445082:+,RP11-662J14.1->chr14:40855456-40855998:+	NCIH1734_LUNG	1	1	0.1657	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MT-TA--MT-TC	16	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1396	0.0087	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1734_LUNG	1	1	0.1483	FALSE	462	80	0	856	0	FALSE	ACH-000675
NCIH1734_LUNG	MED13--MARCH10	14	8	MED13	9824	chr17:60106902:-	MARCH10	44942	chr17:60865960:-	ONLY_REF_SPLICE	YES	164	0	0.12	1	0.1221	0.0698	MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,MARCH10->chr17:60778675-60885705:-,membrane_associated_ring-CH-type_finger_10	NCIH1734_LUNG	0.12	1	0.1919	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MT-ND4--MT-ND4L	11	20	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	3256	0	0.01	1	0.096	0.1745	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1734_LUNG	0.01	1	0.2705	FALSE	344	827	44	306	0	FALSE	ACH-000675
NCIH1734_LUNG	NPM1P24--SET	16	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1396	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1734_LUNG	1	1	0.1396	TRUE	0	0	0	434	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-ND4--MT-ND4L	3	50	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.0262	0.4362	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1734_LUNG	0.95	1	0.4624	FALSE	344	821	44	306	0	FALSE	ACH-000675
NCIH1734_LUNG	HSP90AB1--MT-RNR2	12	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3778	0	0	1	0.1047	0.0262	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1734_LUNG	0	1	0.1309	FALSE	13	9	0	364	0	FALSE	ACH-000675
NCIH1734_LUNG	TPPP--EYS	12	3	TPPP	2433	chr5:677865:-	EYS	35454	chr6:65707596:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1047	0.0262	TPPP->chr5:660883-693510:-,tubulin_polymerization_promoting_protein,EYS->chr6:64429876-66417118:-,eyes_shut_homolog_(Drosophila)	NCIH1734_LUNG	1	1	0.1309	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MT-ND4--MT-ND4L	7	20	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10	0	0.73	1	0.0611	0.1745	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1734_LUNG	0.73	1	0.2356	FALSE	344	826	44	306	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-ND4--MT-ND4L	3	35	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	12	0	0.76	1	0.0262	0.3054	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1734_LUNG	0.76	1	0.3316	FALSE	344	826	44	306	0	FALSE	ACH-000675
NCIH1734_LUNG	NRIP1--AF127936.7	11	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	31	0	0.31	1	0.096	0.0262	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1734_LUNG	0.31	1	0.1222	FALSE	125	705	46	456	0	FALSE	ACH-000675
NCIH1734_LUNG	PDE4D--CWC27	11	2	PDE4D	19661	chr5:59064073:-	CWC27	75134	chr5:64267530:+	ONLY_REF_SPLICE	YES	0	63	1	0.17	0.096	0.0174	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,CWC27->CWC27_spliceosome_associated_protein_homolog,chr5:64064757-64314590:+	NCIH1734_LUNG	0.17	1	0.1134	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	RP11-120D5.1--MID1	10	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	23	1	0.39	0.0872	0.0436	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1734_LUNG	0.39	1	0.1308	FALSE	16	356	14	466	0	FALSE	ACH-000675
NCIH1734_LUNG	C15orf57--CBX3	9	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	31	34	0.35	0.33	0.0785	0.0698	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1734_LUNG	0.33	0.35	0.1483	TRUE	267	562	48	632	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-ND4--MT-ND4L	8	10	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	14	0	0.56	1	0.0698	0.0872	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1734_LUNG	0.56	1	0.157	FALSE	344	826	44	306	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-ND4--MT-ND4L	5	21	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0436	0.1832	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1734_LUNG	0.96	1	0.2268	FALSE	344	821	44	306	0	FALSE	ACH-000675
NCIH1734_LUNG	RP11-386G11.10--P4HB	10	0	RP11-386G11.10	1422	chr12:49521986:+	P4HB	16899	chr17:79801485:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0872	0	RP11-386G11.10->chr12:49521565-49541652:+,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	NCIH1734_LUNG	1	1	0.0872	TRUE	0	1	0	2	1	TRUE	ACH-000675
NCIH1734_LUNG	RP11-96H19.1--RP11-446N19.1	9	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0785	0.0262	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1734_LUNG	0.92	1	0.1047	FALSE	407	2205	196	549	0	FALSE	ACH-000675
NCIH1734_LUNG	CTD-3006G17.2--PASK	8	3	CTD-3006G17.2	4550	chr14:28125649:-	PASK	15224	chr2:242082489:-	ONLY_REF_SPLICE	YES	11	21	0.5	0.34	0.0698	0.0262	CTD-3006G17.2->chr14:27727923-28314492:-,PASK->PAS_domain_containing_serine/threonine_kinase,chr2:242045514-242089679:-	NCIH1734_LUNG	0.34	0.5	0.096	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	CTD-2008L17.1--RP11-456O19.2	8	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0698	0.0174	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1734_LUNG	0.91	1	0.0872	FALSE	20	187	4	79	0	FALSE	ACH-000675
NCIH1734_LUNG	RP11-96H19.1--RP11-446N19.1	8	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.91	0.91	0.0698	0.0174	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1734_LUNG	0.91	0.91	0.0872	FALSE	515	4851	409	746	0	FALSE	ACH-000675
NCIH1734_LUNG	NRIP1--AF127936.7	8	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.53	1	0.0698	0.0087	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1734_LUNG	0.53	1	0.0785	FALSE	292	1546	117	613	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-ND4--MT-ND4L	3	20	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9	0	0.72	1	0.0262	0.1745	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1734_LUNG	0.72	1	0.2007	FALSE	344	826	44	306	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-ND4--MT-ND4L	3	20	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12	0	0.66	1	0.0262	0.1745	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1734_LUNG	0.66	1	0.2007	FALSE	344	826	44	306	0	FALSE	ACH-000675
NCIH1734_LUNG	HSP90AB1--MT-RNR2	7	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3787	0	0	1	0.0611	0.0262	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1734_LUNG	0	1	0.0873	FALSE	13	9	0	364	0	FALSE	ACH-000675
NCIH1734_LUNG	RP4-565E6.1--HYDIN	7	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0611	0.0087	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1734_LUNG	1	1	0.0698	TRUE	456	1387	91	133	0	FALSE	ACH-000675
NCIH1734_LUNG	CALM3--MT-ATP8	7	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11664	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1734_LUNG	1	1	0.0611	FALSE	12	0	0	26	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-ND6--MT-TE	7	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1734_LUNG	1	1	0.0611	FALSE	499	1288	110	792	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-ND6--MT-TE	3	15	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.0262	0.1309	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1734_LUNG	0.86	1	0.1571	FALSE	499	1288	110	792	0	FALSE	ACH-000675
NCIH1734_LUNG	FAM60A--DPF3	2	18	FAM60A	2833	chr12:31478160:-	DPF3	25883	chr14:73238601:-	ONLY_REF_SPLICE	YES	72	0	0.22	1	0.0174	0.157	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,DPF3->chr14:73086004-73360809:-,double_PHD_fingers_3	NCIH1734_LUNG	0.22	1	0.1744	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MT-ND4--MT-ND4L	4	10	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	22	0	0.39	1	0.0349	0.0872	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1734_LUNG	0.39	1	0.1221	FALSE	344	827	44	306	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-ND6--MT-TE	3	13	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.8	1	0.0262	0.1134	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1734_LUNG	0.8	1	0.1396	FALSE	499	1288	110	792	0	FALSE	ACH-000675
NCIH1734_LUNG	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	35	1	0.17	0.0523	0.0087	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1734_LUNG	0.17	1	0.061	TRUE	458	1351	185	561	0	FALSE	ACH-000675
NCIH1734_LUNG	SPECC1--RAI1	6	1	SPECC1	10433	chr17:20000111:+	RAI1	44376	chr17:17627342:+	ONLY_REF_SPLICE	YES	0	3	1	0.7	0.0523	0.0087	SPECC1->Oncogene{Bushman},chr17:19912657-20222339:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1,RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1	NCIH1734_LUNG	0.7	1	0.061	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	CALM3--MT-ATP8	6	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0523	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1734_LUNG	1	1	0.0523	FALSE	12	0	0	26	0	FALSE	ACH-000675
NCIH1734_LUNG	LINC01036--LINC01037	6	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0523	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	NCIH1734_LUNG	1	1	0.0523	FALSE	0	24	0	62	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-ND6--MT-TE	3	11	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0262	0.096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1734_LUNG	1	1	0.1222	FALSE	499	1288	110	792	0	FALSE	ACH-000675
NCIH1734_LUNG	COMMD2--ACTL6A	5	1	COMMD2	2822	chr3:149468465:-	ACTL6A	11788	chr3:179287612:+	ONLY_REF_SPLICE	YES	124	661	0.05	0.01	0.0436	0.0087	COMMD2->COMM_domain_containing_2,chr3:149456257-149470286:-,ACTL6A->actin_like_6A,chr3:179280668-179306196:+	NCIH1734_LUNG	0.01	0.05	0.0523	FALSE	0	0	0	1	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-TA--MT-TC	5	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0.0087	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1734_LUNG	1	1	0.0523	FALSE	462	80	0	856	0	FALSE	ACH-000675
NCIH1734_LUNG	BPIFB5P--BPIFB3	4	4	BPIFB5P	7350	chr20:31913660:+	BPIFB3	15134	chr20:31647184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0.0349	HGNC_GENEFAM,BPIFB5P->BPI_fold_containing_family_B_member_5,_pseudogene,chr20:31904675-31917775:+,BPIFB3->BPI_fold_containing_family_B_member_3,chr20:31643230-31661434:+	NCIH1734_LUNG	1	1	0.0698	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MAP2K5--EIF2AK3	5	0	MAP2K5	28818	chr15:68040939:+	EIF2AK3	51257	chr2:88874964:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	PROTCLUST,MAP2K5->Oncogene{Bushman},chr15:67835047-68099461:+,mitogen-activated_protein_kinase_kinase_5,EIF2AK3->chr2:88856259-88927094:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_3	NCIH1734_LUNG	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1734_LUNG	1	1	0.0436	FALSE	344	821	44	306	0	FALSE	ACH-000675
NCIH1734_LUNG	RP11-548L20.1--RP11-79E3.3	5	0	RP11-548L20.1	2265	chr4:34260709:-	RP11-79E3.3	12416	chr4:33949146:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	NEIGHBORS[81001],RP11-548L20.1->chr4:34122516-34271369:-,RP11-79E3.3->chr4:33777969-34041515:-	NCIH1734_LUNG	1	1	0.0436	FALSE	2	10	2	7	0	FALSE	ACH-000675
NCIH1734_LUNG	KPNA4--FIG4	4	3	KPNA4	16621	chr3:160219872:-	FIG4	38393	chr6:110081453:+	INCL_NON_REF_SPLICE	YES	126	19	0.05	0.27	0.0349	0.0262	KPNA4->chr3:160212783-160283376:-,karyopherin_subunit_alpha_4,FIG4->FIG4_phosphoinositide_5-phosphatase,chr6:110012499-110146631:+	NCIH1734_LUNG	0.05	0.27	0.0611	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	C15orf57--CBX3	3	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	27	34	0.25	0.21	0.0262	0.0523	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1734_LUNG	0.21	0.25	0.0785	TRUE	267	562	48	632	0	FALSE	ACH-000675
NCIH1734_LUNG	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	100	1	0.05	0.0349	0.0087	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1734_LUNG	0.05	1	0.0436	TRUE	465	1949	224	605	0	FALSE	ACH-000675
NCIH1734_LUNG	SLC1A5--MT-ND4L	4	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	503	0	0.01	1	0.0349	0.0087	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1734_LUNG	0.01	1	0.0436	FALSE	0	0	0	189	0	FALSE	ACH-000675
NCIH1734_LUNG	SLCO2A1--RP11-298O21.3	4	1	SLCO2A1	5904	chr3:133692507:-	RP11-298O21.3	25289	chr3:167584675:-	ONLY_REF_SPLICE	YES	120	0	0.04	1	0.0349	0.0087	SLCO2A1->chr3:133651540-133771028:-,solute_carrier_organic_anion_transporter_family_member_2A1,RP11-298O21.3->chr3:167584288-167588765:-	NCIH1734_LUNG	0.04	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	C2CD5--PKP2	2	8	C2CD5	7576	chr12:22676360:-	PKP2	52242	chr12:32945665:-	ONLY_REF_SPLICE	YES	42	14	0.19	0.42	0.0174	0.0698	C2CD5->C2_calcium-dependent_domain_containing_5,chr12:22601517-22697480:-,PKP2->chr12:32943679-33049774:-,plakophilin_2	NCIH1734_LUNG	0.19	0.42	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	GRK4--PDE6B	4	0	GRK4	1263	chr4:2965597:+	PDE6B	34680	chr4:649729:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+,PDE6B->chr4:619373-664571:+,phosphodiesterase_6B	NCIH1734_LUNG	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	LINC01036--LINC01037	4	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	NCIH1734_LUNG	1	1	0.0349	FALSE	0	26	0	50	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1734_LUNG	1	1	0.0349	FALSE	499	1288	110	792	0	FALSE	ACH-000675
NCIH1734_LUNG	NBEA--STXBP5-AS1	3	4	NBEA	1828	chr13:35517251:+	STXBP5-AS1	88526	chr6:147181879:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0262	0.0349	NBEA->chr13:35516424-36247159:+,neurobeachin,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	NCIH1734_LUNG	0.88	1	0.0611	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	CWC27--PDE4D	3	3	CWC27	16634	chr5:64181373:+	PDE4D	49605	chr5:58511794:-	ONLY_REF_SPLICE	YES	61	16	0.09	0.27	0.0262	0.0262	CWC27->CWC27_spliceosome_associated_protein_homolog,chr5:64064757-64314590:+,PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D	NCIH1734_LUNG	0.09	0.27	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	GRK4--PDE6B	3	3	GRK4	1436	chr4:2965770:+	PDE6B	34605	chr4:649654:+	INCL_NON_REF_SPLICE	NO	17	0	0.26	1	0.0262	0.0262	GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+,PDE6B->chr4:619373-664571:+,phosphodiesterase_6B	NCIH1734_LUNG	0.26	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	NBEA--STXBP5-AS1	3	3	NBEA	1828	chr13:35517251:+	STXBP5-AS1	89652	chr6:147172467:-	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0262	0.0262	NBEA->chr13:35516424-36247159:+,neurobeachin,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	NCIH1734_LUNG	0.86	0.86	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	RP11-120D5.1--MID1	3	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	23	1	0.21	0.0262	0.0262	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1734_LUNG	0.21	1	0.0524	FALSE	0	48	1	163	0	FALSE	ACH-000675
NCIH1734_LUNG	PDIA4--PPIA	3	2	PDIA4	6431	chr7:148709341:-	PPIA	15239	chr7:44836309:+	INCL_NON_REF_SPLICE	YES	808	0	0.01	1	0.0262	0.0174	PDIA4->chr7:148700154-148725733:-,protein_disulfide_isomerase_family_A_member_4,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	NCIH1734_LUNG	0.01	1	0.0436	FALSE	0	0	0	2	0	FALSE	ACH-000675
NCIH1734_LUNG	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0174	0.0523	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1734_LUNG	1	1	0.0697	FALSE	192	492	57	212	0	FALSE	ACH-000675
NCIH1734_LUNG	AGAP2--OS9	3	1	AGAP2	8430	chr12:58125149:-	OS9	25333	chr12:58114189:+	ONLY_REF_SPLICE	YES	4	563	0.5	0.01	0.0262	0.0087	LOCAL_INVERSION:-:+:[3640],AGAP2->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_2,Oncogene{Bushman},chr12:58118980-58135940:-,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	NCIH1734_LUNG	0.01	0.5	0.0349	FALSE	0	0	0	1	0	FALSE	ACH-000675
NCIH1734_LUNG	CTD-2008L17.1--RP11-456O19.2	3	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0262	0.0087	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1734_LUNG	0.8	1	0.0349	FALSE	33	240	4	98	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-ND4--MT-ND4L	3	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0262	0.0087	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1734_LUNG	0.8	1	0.0349	FALSE	344	821	44	306	0	FALSE	ACH-000675
NCIH1734_LUNG	P4HB--ACTN4	3	1	P4HB	9676	chr17:79801748:-	ACTN4	28025	chr19:39214930:+	INCL_NON_REF_SPLICE	YES	2765	1052	0	0	0.0262	0.0087	P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+	NCIH1734_LUNG	0	0	0.0349	FALSE	0	0	0	2	0	FALSE	ACH-000675
NCIH1734_LUNG	RP11-120D5.1--MID1	2	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	0	6	1	0.54	0.0174	0.0436	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1734_LUNG	0.54	1	0.061	FALSE	0	23	1	67	0	FALSE	ACH-000675
NCIH1734_LUNG	AC002985.3--MT-CO3	3	0	AC002985.3	5623	chr19:19021839:-	MT-CO3	9853	chrM:9277:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0262	0	AC002985.3->chr19:19017822-19045206:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH1734_LUNG	1	1	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000675
NCIH1734_LUNG	C3orf58--CLVS2	2	4	C3orf58	2192	chr3:143691831:+	CLVS2	18995	chr6:123369767:+	ONLY_REF_SPLICE	NO	24	1	0.2	0.86	0.0174	0.0349	{Klijn_CCL:Lung=1},C3orf58->chr3:143690640-143767561:+,chromosome_3_open_reading_frame_58,CLVS2->chr6:123317116-123394072:+,clavesin_2	NCIH1734_LUNG	0.2	0.86	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	C3orf58--CLVS2	2	4	C3orf58	2192	chr3:143691831:+	CLVS2	17820	chr6:123332130:+	ONLY_REF_SPLICE	YES	24	1	0.2	0.86	0.0174	0.0349	{Klijn_CCL:Lung=1},C3orf58->chr3:143690640-143767561:+,chromosome_3_open_reading_frame_58,CLVS2->chr6:123317116-123394072:+,clavesin_2	NCIH1734_LUNG	0.2	0.86	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	CALM3--MT-ATP8	3	0	CALM3	8081	chr19:47113583:+	MT-ATP8	11589	chrM:8406:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0262	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1734_LUNG	1	1	0.0262	FALSE	12	0	0	26	0	FALSE	ACH-000675
NCIH1734_LUNG	FAM60A--DPF3	2	4	FAM60A	2035	chr12:31478958:-	DPF3	27044	chr14:73220079:-	ONLY_REF_SPLICE	YES	40	40	0.13	0.13	0.0174	0.0349	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,DPF3->chr14:73086004-73360809:-,double_PHD_fingers_3	NCIH1734_LUNG	0.13	0.13	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0262	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1734_LUNG	1	1	0.0262	FALSE	499	1288	110	792	0	FALSE	ACH-000675
NCIH1734_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0262	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1734_LUNG	1	1	0.0262	FALSE	499	1288	110	792	0	FALSE	ACH-000675
NCIH1734_LUNG	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0262	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1734_LUNG	1	1	0.0262	TRUE	0	0	0	434	0	FALSE	ACH-000675
NCIH1734_LUNG	OGG1--BRPF1	2	4	OGG1	8149	chr3:9800970:+	BRPF1	29282	chr3:9787257:+	ONLY_REF_SPLICE	YES	22	18	0.21	0.25	0.0174	0.0349	LOCAL_REARRANGEMENT:+:[1926],OGG1->8-oxoguanine_DNA_glycosylase,chr3:9791628-9829903:+,BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+	NCIH1734_LUNG	0.21	0.25	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	TRIM26--MT-ND4L	3	0	TRIM26	11370	chr6:30152598:-	MT-ND4L	14738	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0262	0	TRIM26->chr6:30152232-30181204:-,tripartite_motif_containing_26,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1734_LUNG	1	1	0.0262	FALSE	0	0	0	3	0	FALSE	ACH-000675
NCIH1734_LUNG	CTD-3006G17.2--PASK	2	3	CTD-3006G17.2	4655	chr14:28125544:-	PASK	15224	chr2:242082489:-	ONLY_REF_SPLICE	YES	13	21	0.28	0.19	0.0174	0.0262	CTD-3006G17.2->chr14:27727923-28314492:-,PASK->PAS_domain_containing_serine/threonine_kinase,chr2:242045514-242089679:-	NCIH1734_LUNG	0.19	0.28	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	18197	chr21:16225752:-	ONLY_REF_SPLICE	YES	31	16	0.11	0.2	0.0174	0.0174	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1734_LUNG	0.11	0.2	0.0348	FALSE	1	3	0	3	0	FALSE	ACH-000675
NCIH1734_LUNG	OGG1--BRPF1	2	2	OGG1	4333	chr3:9796569:+	BRPF1	29282	chr3:9787257:+	ONLY_REF_SPLICE	YES	56	18	0.07	0.18	0.0174	0.0174	LOCAL_REARRANGEMENT:+:[1926],OGG1->8-oxoguanine_DNA_glycosylase,chr3:9791628-9829903:+,BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+	NCIH1734_LUNG	0.07	0.18	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	IGSF9B--DPF3	1	5	IGSF9B	1295	chr11:133826586:-	DPF3	37624	chr14:73220079:-	ONLY_REF_SPLICE	NO	0	40	1	0.13	0.0087	0.0436	IGSF9B->chr11:133778459-133826880:-,immunoglobulin_superfamily_member_9B,DPF3->chr14:73086004-73360809:-,double_PHD_fingers_3	NCIH1734_LUNG	0.13	1	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	23575	chr4:98184732:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0174	0.0087	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH1734_LUNG	0.75	1	0.0261	TRUE	0	4	0	2	4	TRUE	ACH-000675
NCIH1734_LUNG	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	22333	chr4:98480268:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0.0087	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH1734_LUNG	1	1	0.0261	TRUE	0	6	0	7	6	TRUE	ACH-000675
NCIH1734_LUNG	ARHGEF33--GALM	2	0	ARHGEF33	19976	chr2:39193286:+	GALM	35788	chr2:38956698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	ARHGEF33->Rho_guanine_nucleotide_exchange_factor_33,chr2:39117021-39202590:+,GALM->chr2:38893052-38968379:+,galactose_mutarotase_(aldose_1-epimerase)	NCIH1734_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	C2CD5--PKP2	1	4	C2CD5	6530	chr12:22677406:-	PKP2	50908	chr12:32949232:-	ONLY_REF_SPLICE	YES	42	5	0.11	0.5	0.0087	0.0349	C2CD5->C2_calcium-dependent_domain_containing_5,chr12:22601517-22697480:-,PKP2->chr12:32943679-33049774:-,plakophilin_2	NCIH1734_LUNG	0.11	0.5	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	CAPZA2--RPL41	2	0	CAPZA2	3371	chr7:116502704:+	RPL41	25576	chr12:56510559:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,RPL41->chr12:56510370-56511727:+,ribosomal_protein_L41	NCIH1734_LUNG	1	1	0.0174	TRUE	0	1	0	2	0	TRUE	ACH-000675
NCIH1734_LUNG	CNOT10--MLXIP	2	0	CNOT10	1338	chr3:32726974:+	MLXIP	31870	chr12:122611803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	CNOT10->CCR4-NOT_transcription_complex_subunit_10,chr3:32726637-32815367:+,MLXIP->MLX_interacting_protein,chr12:122516628-122631894:+	NCIH1734_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	MAP2K5--EIF2AK3	2	0	MAP2K5	28818	chr15:68040939:+	EIF2AK3	53038	chr2:88870559:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	PROTCLUST,MAP2K5->Oncogene{Bushman},chr15:67835047-68099461:+,mitogen-activated_protein_kinase_kinase_5,EIF2AK3->chr2:88856259-88927094:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_3	NCIH1734_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	NBEA--STXBP5-AS1	1	4	NBEA	1828	chr13:35517251:+	STXBP5-AS1	82736	chr6:147232801:-	ONLY_REF_SPLICE	YES	1	2	0.83	0.71	0.0087	0.0349	NBEA->chr13:35516424-36247159:+,neurobeachin,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	NCIH1734_LUNG	0.71	0.83	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	OGG1--BRPF1	1	4	OGG1	5679	chr3:9798500:+	BRPF1	29282	chr3:9787257:+	ONLY_REF_SPLICE	YES	48	18	0.09	0.22	0.0087	0.0349	LOCAL_REARRANGEMENT:+:[1926],OGG1->8-oxoguanine_DNA_glycosylase,chr3:9791628-9829903:+,BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+	NCIH1734_LUNG	0.09	0.22	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	RP1-34H18.1--NAV3	2	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH1734_LUNG	1	1	0.0174	TRUE	254	575	65	124	0	FALSE	ACH-000675
NCIH1734_LUNG	RP11-762I7.5--PAH	2	0	RP11-762I7.5	8630	chr12:56197413:-	PAH	44752	chr12:103232996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	RP11-762I7.5->chr12:56151059-56221330:-,PAH->chr12:103230663-103352188:-,phenylalanine_hydroxylase	NCIH1734_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	SAR1A--ANXA11	2	0	SAR1A	1111	chr10:71930169:-	ANXA11	24757	chr10:81932625:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	SAR1A->chr10:71907045-71930279:-,secretion_associated_Ras_related_GTPase_1A,ANXA11->annexin_A11,chr10:81910645-81965328:-	NCIH1734_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	SUPT3H--C9orf3	2	0	SUPT3H	2744	chr6:45332938:-	C9orf3	58935	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	NCIH1734_LUNG	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	36	0	0.1	1	0.0087	0.0262	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1734_LUNG	0.1	1	0.0349	FALSE	164	806	69	479	0	FALSE	ACH-000675
NCIH1734_LUNG	OGG1--BRPF1	1	2	OGG1	8149	chr3:9800970:+	BRPF1	30009	chr3:9787984:+	ONLY_REF_SPLICE	YES	22	33	0.12	0.08	0.0087	0.0174	LOCAL_REARRANGEMENT:+:[1926],OGG1->8-oxoguanine_DNA_glycosylase,chr3:9791628-9829903:+,BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+	NCIH1734_LUNG	0.08	0.12	0.0261	TRUE	0	0	0	1	0	FALSE	ACH-000675
NCIH1734_LUNG	OGG1--BRPF1	1	2	OGG1	5679	chr3:9798500:+	BRPF1	30009	chr3:9787984:+	ONLY_REF_SPLICE	NO	48	33	0.06	0.08	0.0087	0.0174	LOCAL_REARRANGEMENT:+:[1926],OGG1->8-oxoguanine_DNA_glycosylase,chr3:9791628-9829903:+,BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+	NCIH1734_LUNG	0.06	0.08	0.0261	TRUE	0	0	0	1	0	FALSE	ACH-000675
NCIH1734_LUNG	OGG1--BRPF1	1	2	OGG1	3006	chr3:9793633:+	BRPF1	30009	chr3:9787984:+	ONLY_REF_SPLICE	NO	95	33	0.03	0.08	0.0087	0.0174	LOCAL_REARRANGEMENT:+:[1926],OGG1->8-oxoguanine_DNA_glycosylase,chr3:9791628-9829903:+,BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+	NCIH1734_LUNG	0.03	0.08	0.0261	TRUE	0	0	0	1	0	FALSE	ACH-000675
NCIH1734_LUNG	PRUNE2--RP11-767I20.1	1	2	PRUNE2	8127	chr9:79438548:-	RP11-767I20.1	45355	chr12:59106134:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0087	0.0174	PRUNE2->chr9:79226292-79521003:-,prune_homolog_2_(Drosophila),RP11-767I20.1->chr12:58959743-59175529:-	NCIH1734_LUNG	0.5	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	COMMD2--ACTL6A	1	1	COMMD2	3243	chr3:149468044:-	ACTL6A	11788	chr3:179287612:+	ONLY_REF_SPLICE	YES	134	661	0.01	0	0.0087	0.0087	COMMD2->COMM_domain_containing_2,chr3:149456257-149470286:-,ACTL6A->actin_like_6A,chr3:179280668-179306196:+	NCIH1734_LUNG	0	0.01	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000675
NCIH1734_LUNG	CTD-3006G17.2--PASK	1	1	CTD-3006G17.2	1106	chr14:28314387:-	PASK	15224	chr2:242082489:-	ONLY_REF_SPLICE	NO	5	21	0.29	0.09	0.0087	0.0087	CTD-3006G17.2->chr14:27727923-28314492:-,PASK->PAS_domain_containing_serine/threonine_kinase,chr2:242045514-242089679:-	NCIH1734_LUNG	0.09	0.29	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000675
NCIH1734_LUNG	GATS--PILRB	1	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	32	90	0.06	0.02	0.0087	0.0087	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	NCIH1734_LUNG	0.02	0.06	0.0174	TRUE	57	41	2	35	0	FALSE	ACH-000675
NCIH1734_LUNG	RP11-3J1.1--GNAS	1	1	RP11-3J1.1	1349	chr4:19458269:-	GNAS	22478	chr20:57470667:+	ONLY_REF_SPLICE	YES	1	535	0.67	0	0.0087	0.0087	RP11-3J1.1->chr4:19173958-19458617:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1734_LUNG	0	0.67	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000675
NCIH1734_LUNG	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	1346	chr4:98554629:-	STPG2	23575	chr4:98184732:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0087	0.0087	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH1734_LUNG	0.67	1	0.0174	TRUE	0	3	0	2	3	TRUE	ACH-000675
NCIH1734_LUNG	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	1346	chr4:98554629:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0087	0.0087	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH1734_LUNG	0.67	1	0.0174	TRUE	0	6	0	6	6	TRUE	ACH-000675
NCIH1734_LUNG	RPL23A--TAOK1	1	1	RPL23A	2498	chr17:27047908:+	TAOK1	11321	chr17:27794163:+	ONLY_REF_SPLICE	NO	2562	49	0	0.04	0.0087	0.0087	RPL23A->chr17:27046411-27051377:+,ribosomal_protein_L23a,TAOK1->TAO_kinase_1,chr17:27717482-27878922:+	NCIH1734_LUNG	0	0.04	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000675
NCIH1734_LUNG	SLCO2A1--SLC9A9-AS2	1	1	SLCO2A1	5904	chr3:133692507:-	SLC9A9-AS2	24174	chr3:143100786:+	ONLY_REF_SPLICE	NO	120	0	0.02	1	0.0087	0.0087	SLCO2A1->chr3:133651540-133771028:-,solute_carrier_organic_anion_transporter_family_member_2A1,SLC9A9-AS2->SLC9A9_antisense_RNA_2,chr3:143100180-143101003:+	NCIH1734_LUNG	0.02	1	0.0174	TRUE	0	0	0	1	0	FALSE	ACH-000675
JHOS4_OVARY	ATF4--RP11-480I12.5	707	284	ATF4	3295	chr22:39917994:+	RP11-480I12.5	12428	chr1:202822327:-	INCL_NON_REF_SPLICE	YES	742	2	0.57	1	8.0872	3.2486	ATF4->Oncogene{Bushman},activating_transcription_factor_4,chr22:39915700-39918691:+,RP11-480I12.5->chr1:202820956-202830748:-	JHOS4_OVARY	0.57	1	11.3358	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	RNF213--SLC26A11	466	217	RNF213	2242	chr17:78237577:+	SLC26A11	91119	chr17:78218995:+	ONLY_REF_SPLICE	YES	50	80	0.93	0.9	5.3305	2.4822	LOCAL_REARRANGEMENT:+:[7366],RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,SLC26A11->Oncogene{Bushman},chr17:78193498-78227299:+,solute_carrier_family_26_member_11	JHOS4_OVARY	0.9	0.93	7.8127	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	ESRRA--VEGFB	245	36	ESRRA	1165	chr11:64073208:+	VEGFB	12560	chr11:64004659:+	ONLY_REF_SPLICE	YES	9	184	0.97	0.6	2.8025	0.4118	LOCAL_REARRANGEMENT:+:[66785],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,VEGFB->chr11:64002010-64006259:+,vascular_endothelial_growth_factor_B	JHOS4_OVARY	0.6	0.97	3.2143	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	TIMM23B--LINC00843	89	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0181	0.2173	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHOS4_OVARY	0.99	1	1.2354	TRUE	508	994	45	981	0	FALSE	ACH-000584
JHOS4_OVARY	EXOC6B--C12orf54	73	22	EXOC6B	1244	chr2:73052927:-	C12orf54	37958	chr12:48879961:+	ONLY_REF_SPLICE	YES	6	0	0.94	1	0.835	0.2517	EXOC6B->chr2:72403113-73053170:-,exocyst_complex_component_6B,C12orf54->chr12:48876286-48890295:+,chromosome_12_open_reading_frame_54	JHOS4_OVARY	0.94	1	1.0867	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	NDUFS4--PHF3	64	18	NDUFS4	1128	chr5:52856590:+	PHF3	15620	chr6:64389901:+	ONLY_REF_SPLICE	YES	137	19	0.37	0.81	0.7321	0.2059	NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+,PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+	JHOS4_OVARY	0.37	0.81	0.938	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	C16orf62--CCP110	52	25	C16orf62	3955	chr16:19580913:+	CCP110	58583	chr16:19556119:+	ONLY_REF_SPLICE	YES	65	8	0.54	0.91	0.5948	0.286	LOCAL_REARRANGEMENT:+:[1832],C16orf62->chr16:19566562-19718115:+,chromosome_16_open_reading_frame_62,CCP110->centriolar_coiled-coil_protein_110kDa,chr16:19535133-19564730:+	JHOS4_OVARY	0.54	0.91	0.8808	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	TIMM23--RP11-464F9.1	44	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	195	1	0.19	0.98	0.5033	0.0114	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JHOS4_OVARY	0.19	0.98	0.5147	TRUE	519	3926	326	965	0	FALSE	ACH-000584
JHOS4_OVARY	MT-TA--MT-TC	41	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.469	0.0343	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOS4_OVARY	1	1	0.5033	FALSE	462	80	0	856	0	FALSE	ACH-000584
JHOS4_OVARY	KLF5--RP11-1055B8.7	30	20	KLF5	6989	chr13:73638021:+	RP11-1055B8.7	31005	chr17:79422293:+	ONLY_REF_SPLICE	YES	89	1	0.36	0.98	0.3432	0.2288	KLF5->Kruppel-like_factor_5_(intestinal),Oncogene{Bushman},chr13:73629114-73651676:+,RP11-1055B8.7->chr17:79373540-79433357:+	JHOS4_OVARY	0.36	0.98	0.572	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	GOLPH3--DNAI2	34	2	GOLPH3	1541	chr5:32173916:-	DNAI2	16915	chr17:72295857:+	ONLY_REF_SPLICE	YES	41	0	0.47	1	0.3889	0.0229	GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3,DNAI2->chr17:72270386-72311023:+,dynein_axonemal_intermediate_chain_2	JHOS4_OVARY	0.47	1	0.4118	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	DDX17--AP000345.1	30	11	DDX17	2460	chr22:38901956:-	AP000345.1	23736	chr22:23825313:-	ONLY_REF_SPLICE	YES	173	0	0.19	1	0.3432	0.1258	DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-,AP000345.1->chr22:23804273-23829167:-	JHOS4_OVARY	0.19	1	0.469	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	RNF213--SLC26A11	1	121	RNF213	2242	chr17:78237577:+	SLC26A11	92077	chr17:78219953:+	ONLY_REF_SPLICE	YES	50	75	0.71	0.62	0.0114	1.3841	LOCAL_REARRANGEMENT:+:[7366],RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,SLC26A11->Oncogene{Bushman},chr17:78193498-78227299:+,solute_carrier_family_26_member_11	JHOS4_OVARY	0.62	0.71	1.3955	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ND1	28	1	MT-ND4	1213	chrM:10972:+	MT-ND1	5394	chrM:3322:+	INCL_NON_REF_SPLICE	YES	9639	0	0	1	0.3203	0.0114	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHOS4_OVARY	0	1	0.3317	FALSE	51	50	3	16	0	FALSE	ACH-000584
JHOS4_OVARY	ATAD2B--PFN4	23	19	ATAD2B	1560	chr2:24149425:-	PFN4	49905	chr2:24344170:-	ONLY_REF_SPLICE	YES	12	3	0.78	0.93	0.2631	0.2173	ATAD2B->ATPase_family,_AAA_domain_containing_2B,chr2:23971534-24149984:-,PFN4->chr2:24338241-24346347:-,profilin_family_member_4	JHOS4_OVARY	0.78	0.93	0.4804	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	FASN--MT-ND2	25	1	FASN	17402	chr17:80038591:-	MT-ND2	23619	chrM:5309:+	INCL_NON_REF_SPLICE	YES	511	4462	0.05	0.01	0.286	0.0114	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	JHOS4_OVARY	0.01	0.05	0.2974	FALSE	5	0	0	5	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND6--MT-TE	22	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2517	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOS4_OVARY	1	1	0.2517	FALSE	499	1288	110	792	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ND1	19	1	MT-ND4	2043	chrM:11802:+	MT-ND1	5745	chrM:3673:+	INCL_NON_REF_SPLICE	NO	10303	8306	0	0	0.2173	0.0114	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHOS4_OVARY	0	0	0.2287	FALSE	51	52	3	16	0	FALSE	ACH-000584
JHOS4_OVARY	ESRRA--VEGFB	9	39	ESRRA	1877	chr11:64073920:+	VEGFB	12560	chr11:64004659:+	ONLY_REF_SPLICE	YES	39	184	0.55	0.21	0.1029	0.4461	LOCAL_REARRANGEMENT:+:[66785],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,VEGFB->chr11:64002010-64006259:+,vascular_endothelial_growth_factor_B	JHOS4_OVARY	0.21	0.55	0.549	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	OXSR1--XCR1	16	8	OXSR1	15129	chr3:38284269:+	XCR1	27968	chr3:46063769:-	ONLY_REF_SPLICE	YES	42	1	0.36	0.96	0.183	0.0915	OXSR1->chr3:38206580-38296979:+,oxidative_stress_responsive_1,XCR1->X-C_motif_chemokine_receptor_1,chr3:46058516-46069234:-	JHOS4_OVARY	0.36	0.96	0.2745	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	GOLPH3--DNAI2	17	0	GOLPH3	1541	chr5:32173916:-	DNAI2	18055	chr17:72297185:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1945	0	GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3,DNAI2->chr17:72270386-72311023:+,dynein_axonemal_intermediate_chain_2	JHOS4_OVARY	1	1	0.1945	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1945	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JHOS4_OVARY	1	1	0.1945	TRUE	0	0	0	518	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	16	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	9584	0	0	1	0.183	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	1	0.1944	FALSE	230	193	14	283	0	FALSE	ACH-000584
JHOS4_OVARY	HSPBP1--ZSWIM6	16	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.183	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	JHOS4_OVARY	1	1	0.183	TRUE	47	32	1	28	0	FALSE	ACH-000584
JHOS4_OVARY	PML--GALNTL6	13	5	PML	2742	chr15:74290817:+	GALNTL6	43828	chr4:173852312:+	ONLY_REF_SPLICE	YES	59	0	0.23	1	0.1487	0.0572	PML->Oncogene{Bushman},chr15:74287014-74340153:+,promyelocytic_leukemia,GALNTL6->chr4:172733405-173962710:+,polypeptide_N-acetylgalactosaminyltransferase-like_6	JHOS4_OVARY	0.23	1	0.2059	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	MT-ND3--MT-ATP8	13	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1487	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	1	1	0.1487	FALSE	351	233	23	137	0	FALSE	ACH-000584
JHOS4_OVARY	RP11-123O10.4--GRIP1	12	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1373	0.0229	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHOS4_OVARY	1	1	0.1602	FALSE	416	2512	207	587	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ND1	12	1	MT-ND4	2221	chrM:11980:+	MT-ND1	5862	chrM:3790:+	INCL_NON_REF_SPLICE	YES	3809	6947	0	0	0.1373	0.0114	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHOS4_OVARY	0	0	0.1487	FALSE	51	52	3	16	0	FALSE	ACH-000584
JHOS4_OVARY	FBXW11--LRRC6	10	8	FBXW11	1416	chr5:171433462:-	LRRC6	42942	chr8:133584728:-	ONLY_REF_SPLICE	YES	121	14	0.13	0.56	0.1144	0.0915	FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,LRRC6->chr8:133584320-133687838:-,leucine_rich_repeat_containing_6	JHOS4_OVARY	0.13	0.56	0.2059	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	11	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11049	1	0	0.94	0.1258	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	0.94	0.1716	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	EXOC6B--C12orf54	7	18	EXOC6B	1244	chr2:73052927:-	C12orf54	38468	chr12:48880471:+	ONLY_REF_SPLICE	YES	6	0	0.81	1	0.0801	0.2059	EXOC6B->chr2:72403113-73053170:-,exocyst_complex_component_6B,C12orf54->chr12:48876286-48890295:+,chromosome_12_open_reading_frame_54	JHOS4_OVARY	0.81	1	0.286	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	PLLP--ARL2BP	11	2	PLLP	3559	chr16:57295809:-	ARL2BP	14513	chr16:57286078:+	ONLY_REF_SPLICE	YES	86	33	0.13	0.28	0.1258	0.0229	LOCAL_INVERSION:-:+:[2488],PLLP->chr16:57290004-57318599:-,plasmolipin,ARL2BP->ADP_ribosylation_factor_like_GTPase_2_binding_protein,chr16:57279010-57287516:+	JHOS4_OVARY	0.13	0.28	0.1487	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	10	4	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	11226	1	0	0.93	0.1144	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	0.93	0.1602	FALSE	231	205	14	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ATP6--MT-CO1	10	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1144	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOS4_OVARY	1	1	0.1144	FALSE	183	104	9	328	0	FALSE	ACH-000584
JHOS4_OVARY	PHF3--RP11-98I9.4	9	4	PHF3	3273	chr6:64356700:+	RP11-98I9.4	30461	chr6:99873100:+	INCL_NON_REF_SPLICE	YES	21	4	0.38	0.76	0.1029	0.0458	PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+,RP11-98I9.4->chr6:99872798-99879249:+	JHOS4_OVARY	0.38	0.76	0.1487	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	8	7	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2050	19	0.01	0.44	0.0915	0.0801	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0.01	0.44	0.1716	FALSE	216	209	16	281	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND6--MT-TE	9	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1029	0.0229	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOS4_OVARY	1	1	0.1258	FALSE	499	1288	110	792	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	9	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9495	1	0	0.91	0.1029	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	0.91	0.1143	FALSE	230	198	14	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	9	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9584	1	0	0.91	0.1029	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	0.91	0.1143	FALSE	230	193	14	283	0	FALSE	ACH-000584
JHOS4_OVARY	RP11-680G10.1--GSE1	8	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	42	1	0.24	0.0915	0.0572	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHOS4_OVARY	0.24	1	0.1487	TRUE	465	1949	224	605	0	FALSE	ACH-000584
JHOS4_OVARY	ARID1A--DDX3X	8	3	ARID1A	2508	chr1:27024031:+	DDX3X	28836	chrX:41196661:+	ONLY_REF_SPLICE	YES	9	356	0.55	0.03	0.0915	0.0343	ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,DDX3X->DEAD-box_helicase_3,_X-linked,chrX:41192651-41223725:+	JHOS4_OVARY	0.03	0.55	0.1258	TRUE	0	0	0	1	0	FALSE	ACH-000584
JHOS4_OVARY	OXSR1--XCR1	8	3	OXSR1	15129	chr3:38284269:+	XCR1	28267	chr3:46063470:-	ONLY_REF_SPLICE	YES	42	4	0.21	0.73	0.0915	0.0343	OXSR1->chr3:38206580-38296979:+,oxidative_stress_responsive_1,XCR1->X-C_motif_chemokine_receptor_1,chr3:46058516-46069234:-	JHOS4_OVARY	0.21	0.73	0.1258	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	RP11-96H19.1--RP11-446N19.1	7	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.88	0.93	0.0801	0.0801	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHOS4_OVARY	0.88	0.93	0.1602	FALSE	515	4851	409	746	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ATP6--MT-CO1	7	5	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2735	16243	0	0	0.0801	0.0572	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOS4_OVARY	0	0	0.1373	FALSE	183	104	9	328	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	7	5	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	10985	134	0	0.08	0.0801	0.0572	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	0.08	0.1373	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	DDX17--AP000345.1	7	4	DDX17	2460	chr22:38901956:-	AP000345.1	26372	chr22:23816125:-	ONLY_REF_SPLICE	YES	173	10	0.06	0.52	0.0801	0.0458	DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-,AP000345.1->chr22:23804273-23829167:-	JHOS4_OVARY	0.06	0.52	0.1259	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	MT-ATP6--MT-CO1	8	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0915	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOS4_OVARY	1	1	0.0915	FALSE	183	104	9	328	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	7	4	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	12334	0	0	1	0.0801	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	1	0.1259	FALSE	231	205	14	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	7	4	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	11144	0	0	1	0.0801	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	1	0.1259	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	7	4	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	10747	0	0	1	0.0801	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	1	0.1259	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	AC003102.3--SLC25A39	6	4	AC003102.3	2225	chr17:42388753:-	SLC25A39	16226	chr17:42400945:-	ONLY_REF_SPLICE	YES	4	309	0.71	0.03	0.0686	0.0458	LOCAL_REARRANGEMENT:-:[4310],AC003102.3->chr17:42376942-42392683:-,SLC25A39->chr17:42396993-42402238:-,solute_carrier_family_25_member_39	JHOS4_OVARY	0.03	0.71	0.1144	TRUE	0	0	0	1	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	6	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11801	0	0	1	0.0686	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	1	0.1144	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	RP11-680G10.1--GSE1	5	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	23	1	0.34	0.0572	0.0801	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHOS4_OVARY	0.34	1	0.1373	TRUE	458	1351	185	561	0	FALSE	ACH-000584
JHOS4_OVARY	RP11-120D5.1--MID1	6	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	51	0.8	0.14	0.0686	0.0229	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHOS4_OVARY	0.14	0.8	0.0915	FALSE	16	356	14	466	0	FALSE	ACH-000584
JHOS4_OVARY	RP11-141M1.3--STARD13	6	2	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	3	0.89	0.73	0.0686	0.0229	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	JHOS4_OVARY	0.73	0.89	0.0915	FALSE	141	264	50	91	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	6	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	10244	1651	0	0	0.0686	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	0	0.08	FALSE	231	204	14	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND6--MT-TE	6	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0.0114	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOS4_OVARY	1	1	0.08	FALSE	499	1288	110	792	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	5	4	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12334	19	0	0.32	0.0572	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	0.32	0.103	FALSE	231	205	14	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	4	8	MT-ND4	2326	chrM:12085:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	2	28	0.86	0.3	0.0458	0.0915	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0.3	0.86	0.1373	FALSE	209	205	15	279	0	FALSE	ACH-000584
JHOS4_OVARY	RP11-634B7.4--TRIM58	5	4	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	9	1	0.5	0.0572	0.0458	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	JHOS4_OVARY	0.5	1	0.103	TRUE	158	633	76	73	0	FALSE	ACH-000584
JHOS4_OVARY	MT-TA--MT-TC	5	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0572	0.0343	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOS4_OVARY	1	1	0.0915	FALSE	462	80	0	856	0	FALSE	ACH-000584
JHOS4_OVARY	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0458	0.0801	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHOS4_OVARY	0.92	1	0.1259	FALSE	467	2173	244	435	0	FALSE	ACH-000584
JHOS4_OVARY	ESRRA--VEGFB	2	14	ESRRA	1165	chr11:64073208:+	VEGFB	12894	chr11:64004993:+	ONLY_REF_SPLICE	YES	9	307	0.64	0.05	0.0229	0.1601	LOCAL_REARRANGEMENT:+:[66785],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,VEGFB->chr11:64002010-64006259:+,vascular_endothelial_growth_factor_B	JHOS4_OVARY	0.05	0.64	0.183	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	APP--MT-CO3	5	1	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	1070	8049	0.01	0	0.0572	0.0114	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	JHOS4_OVARY	0	0.01	0.0686	FALSE	0	0	0	26	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	4	5	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10985	19	0	0.32	0.0458	0.0572	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	0.32	0.103	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	5	1	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7194	19	0	0.24	0.0572	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	0.24	0.0686	FALSE	230	193	14	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	5	1	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	6030	0	0	1	0.0572	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	1	0.0686	FALSE	230	193	14	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ATP6--MT-CO1	3	8	MT-ATP6	1572	chrM:9098:+	MT-CO1	5119	chrM:6341:+	INCL_NON_REF_SPLICE	YES	773	13677	0.01	0	0.0343	0.0915	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOS4_OVARY	0	0.01	0.1258	FALSE	183	104	9	328	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	4	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10951	19	0	0.3	0.0458	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	0.3	0.0916	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	4	4	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	12008	0	0	1	0.0458	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	1	0.0916	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ND1	5	0	MT-ND4	1285	chrM:11044:+	MT-ND1	5862	chrM:3790:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0572	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHOS4_OVARY	1	1	0.0572	FALSE	51	51	3	16	0	FALSE	ACH-000584
JHOS4_OVARY	PCAT1--RP11-382A18.2	5	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0572	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	JHOS4_OVARY	1	1	0.0572	TRUE	4	84	1	46	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	4	3	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	11528	702	0	0.01	0.0458	0.0343	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	0.01	0.0801	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND6--MT-TE	4	3	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0.0343	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOS4_OVARY	1	1	0.0801	FALSE	499	1288	110	792	0	FALSE	ACH-000584
JHOS4_OVARY	APP--MT-ND2	4	2	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	1038	5616	0.01	0	0.0458	0.0229	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	JHOS4_OVARY	0	0.01	0.0687	FALSE	0	1	0	51	0	FALSE	ACH-000584
JHOS4_OVARY	ATAD2B--PFN4	3	6	ATAD2B	1560	chr2:24149425:-	PFN4	51043	chr2:24342552:-	ONLY_REF_SPLICE	YES	12	5	0.43	0.64	0.0343	0.0686	ATAD2B->ATPase_family,_AAA_domain_containing_2B,chr2:23971534-24149984:-,PFN4->chr2:24338241-24346347:-,profilin_family_member_4	JHOS4_OVARY	0.43	0.64	0.1029	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	RNF152--RP11-879F14.1	4	2	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	22	0	0.21	1	0.0458	0.0229	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	JHOS4_OVARY	0.21	1	0.0687	FALSE	275	472	65	43	0	FALSE	ACH-000584
JHOS4_OVARY	FBXW11--LRRC6	2	9	FBXW11	3708	chr5:171423894:-	LRRC6	42942	chr8:133584728:-	ONLY_REF_SPLICE	YES	131	14	0.08	0.44	0.0229	0.1029	FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,LRRC6->chr8:133584320-133687838:-,leucine_rich_repeat_containing_6	JHOS4_OVARY	0.08	0.44	0.1258	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	MT-ATP6--MT-CO1	4	1	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	8866	0	0	1	0.0458	0.0114	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOS4_OVARY	0	1	0.0572	FALSE	182	97	9	327	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ATP6--MT-CO1	4	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9806	15901	0	0	0.0458	0.0114	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOS4_OVARY	0	0	0.0572	FALSE	183	104	9	328	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	4	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	9646	0	0	1	0.0458	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	1	0.0572	FALSE	231	204	14	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	4	1	MT-ND4	1244	chrM:11003:+	MT-ATP8	5476	chrM:8463:+	INCL_NON_REF_SPLICE	YES	9711	0	0	1	0.0458	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	1	0.0572	FALSE	231	204	14	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ND1	4	1	MT-ND4	1988	chrM:11747:+	MT-ND1	5746	chrM:3674:+	INCL_NON_REF_SPLICE	YES	11315	8311	0	0	0.0458	0.0114	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHOS4_OVARY	0	0	0.0572	FALSE	51	52	3	16	0	FALSE	ACH-000584
JHOS4_OVARY	SLC16A12--LIPA	4	1	SLC16A12	5062	chr10:91222136:-	LIPA	29664	chr10:91007406:-	ONLY_REF_SPLICE	YES	6	22	0.45	0.19	0.0458	0.0114	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	JHOS4_OVARY	0.19	0.45	0.0572	FALSE	12	128	21	13	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ATP6--MT-CO1	4	0	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOS4_OVARY	1	1	0.0458	FALSE	183	104	9	328	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ATP6--MT-CO1	4	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOS4_OVARY	1	1	0.0458	FALSE	183	104	9	328	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ATP6--MT-CO1	3	4	MT-ATP6	1303	chrM:8829:+	MT-CO1	5135	chrM:6357:+	INCL_NON_REF_SPLICE	YES	12213	13534	0	0	0.0343	0.0458	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOS4_OVARY	0	0	0.0801	FALSE	183	104	9	328	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	11142	0	0	1	0.0343	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	1	0.0801	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1903	chrM:11662:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	NO	11583	0	0	1	0.0343	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	1	0.0801	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1818	chrM:11577:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	11009	0	0	1	0.0343	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	1	0.0801	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1779	chrM:11538:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11079	1	0	0.88	0.0343	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	0.88	0.0801	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1469	chrM:11228:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	11932	0	0	1	0.0343	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	1	0.0801	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1751	chrM:11510:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	10962	0	0	1	0.0343	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	1	0.0801	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	12375	0	0	1	0.0343	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	1	0.0801	FALSE	231	205	14	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1783	chrM:11542:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11183	19	0	0.27	0.0343	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	0.27	0.0801	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1754	chrM:11513:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	NO	10747	28	0	0.2	0.0343	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	0.2	0.0801	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	11159	0	0	1	0.0343	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	1	0.0801	FALSE	231	217	16	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ND1	4	0	MT-ND4	1257	chrM:11016:+	MT-ND1	6134	chrM:4062:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHOS4_OVARY	1	1	0.0458	FALSE	51	51	3	16	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	3	3	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	12802	1364	0	0	0.0343	0.0343	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	0	0.0686	FALSE	231	205	14	283	0	FALSE	ACH-000584
JHOS4_OVARY	TTK--CTD-2034I4.2	3	3	TTK	9448	chr6:80724303:+	CTD-2034I4.2	29689	chr15:81980751:+	ONLY_REF_SPLICE	YES	16	0	0.27	1	0.0343	0.0343	TTK->TTK_protein_kinase,chr6:80713604-80752244:+,CTD-2034I4.2->chr15:81846344-81989121:+	JHOS4_OVARY	0.27	1	0.0686	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	MT-ND6--MT-TE	3	2	MT-ND6	1096	chrM:14578:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0.0229	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOS4_OVARY	1	1	0.0572	FALSE	499	1288	110	792	0	FALSE	ACH-000584
JHOS4_OVARY	RP11-120D5.1--MID1	3	2	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	1	51	0.83	0.09	0.0343	0.0229	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHOS4_OVARY	0.09	0.83	0.0572	FALSE	0	9	0	55	0	FALSE	ACH-000584
JHOS4_OVARY	AC003005.2--MLLT1	3	1	AC003005.2	1438	chr19:57989454:+	MLLT1	11139	chr19:6227113:-	ONLY_REF_SPLICE	YES	0	38	1	0.1	0.0343	0.0114	AC003005.2->chr19:57989017-57994364:+,MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1	JHOS4_OVARY	0.1	1	0.0457	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	APP--MT-ND2	3	1	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	1070	4139	0	0	0.0343	0.0114	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	JHOS4_OVARY	0	0	0.0457	FALSE	0	1	0	51	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	9525	1	0	0.8	0.0343	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	0.8	0.0457	FALSE	230	193	14	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9647	19	0	0.17	0.0343	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	0	0.17	0.0457	FALSE	230	198	14	283	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ND1	3	1	MT-ND4	1515	chrM:11274:+	MT-ND1	5890	chrM:3818:+	INCL_NON_REF_SPLICE	YES	12582	7480	0	0	0.0343	0.0114	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHOS4_OVARY	0	0	0.0457	FALSE	51	52	3	16	0	FALSE	ACH-000584
JHOS4_OVARY	PHF3--RP11-98I9.4	3	1	PHF3	1331	chr6:64346055:+	RP11-98I9.4	30461	chr6:99873100:+	INCL_NON_REF_SPLICE	YES	12	4	0.25	0.5	0.0343	0.0114	PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+,RP11-98I9.4->chr6:99872798-99879249:+	JHOS4_OVARY	0.25	0.5	0.0457	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	HUWE1--MT-ND4L	3	0	HUWE1	69943	chrX:53565915:-	MT-ND4L	79803	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHOS4_OVARY	1	1	0.0343	FALSE	0	0	0	4	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND3--MT-ATP8	3	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOS4_OVARY	1	1	0.0343	FALSE	351	233	23	137	0	FALSE	ACH-000584
JHOS4_OVARY	MT-ND4--MT-ND1	3	0	MT-ND4	1213	chrM:10972:+	MT-ND1	5864	chrM:3792:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHOS4_OVARY	1	1	0.0343	FALSE	51	50	3	16	0	FALSE	ACH-000584
JHOS4_OVARY	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOS4_OVARY	1	1	0.0343	FALSE	462	80	0	856	0	FALSE	ACH-000584
JHOS4_OVARY	MTAP--RP11-78F17.1	3	0	MTAP	9899	chr9:21854869:+	RP11-78F17.1	26884	chr18:1133844:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-78F17.1->chr18:976590-1174824:+	JHOS4_OVARY	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	MTAP--RP11-78F17.1	3	0	MTAP	9899	chr9:21854869:+	RP11-78F17.1	29083	chr18:1159180:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-78F17.1->chr18:976590-1174824:+	JHOS4_OVARY	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	PHF3--RP11-98I9.4	3	0	PHF3	3273	chr6:64356700:+	RP11-98I9.4	32136	chr6:99878589:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+,RP11-98I9.4->chr6:99872798-99879249:+	JHOS4_OVARY	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	RP11-155G15.2--RP11-1E3.1	3	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	JHOS4_OVARY	1	1	0.0343	FALSE	46	201	11	112	0	FALSE	ACH-000584
JHOS4_OVARY	SLC7A5--ACTG1	3	0	SLC7A5	8068	chr16:87871474:-	ACTG1	21178	chr17:79478603:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	JHOS4_OVARY	1	1	0.0343	TRUE	0	0	0	11	0	TRUE	ACH-000584
JHOS4_OVARY	LGALS8--EDARADD	2	3	LGALS8	5228	chr1:236689415:+	EDARADD	31188	chr1:236631531:+	ONLY_REF_SPLICE	YES	217	1	0.02	0.83	0.0229	0.0343	LOCAL_REARRANGEMENT:+:[33086],LGALS8->chr1:236681300-236716281:+,lectin,_galactoside_binding_soluble_8,EDARADD->EDAR-associated_death_domain,chr1:236511562-236648214:+	JHOS4_OVARY	0.02	0.83	0.0572	TRUE	0	0	0	1	0	FALSE	ACH-000584
JHOS4_OVARY	OXSR1--XCR1	2	3	OXSR1	14093	chr3:38278452:+	XCR1	28267	chr3:46063470:-	ONLY_REF_SPLICE	YES	30	4	0.14	0.56	0.0229	0.0343	OXSR1->chr3:38206580-38296979:+,oxidative_stress_responsive_1,XCR1->X-C_motif_chemokine_receptor_1,chr3:46058516-46069234:-	JHOS4_OVARY	0.14	0.56	0.0572	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0114	0.0801	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHOS4_OVARY	0.8	1	0.0915	FALSE	275	511	55	178	0	FALSE	ACH-000584
JHOS4_OVARY	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.8	1	0.0114	0.0801	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHOS4_OVARY	0.8	1	0.0915	FALSE	407	2205	196	549	0	FALSE	ACH-000584
JHOS4_OVARY	GOLPH3--DNAI2	2	2	GOLPH3	1605	chr5:32173852:-	DNAI2	16915	chr17:72295857:+	ONLY_REF_SPLICE	YES	64	0	0.06	1	0.0229	0.0229	GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3,DNAI2->chr17:72270386-72311023:+,dynein_axonemal_intermediate_chain_2	JHOS4_OVARY	0.06	1	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	NDUFS4--PHF3	2	2	NDUFS4	1128	chr5:52856590:+	PHF3	16782	chr6:64394030:+	ONLY_REF_SPLICE	YES	137	20	0.03	0.17	0.0229	0.0229	NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+,PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+	JHOS4_OVARY	0.03	0.17	0.0458	TRUE	0	0	0	1	0	FALSE	ACH-000584
JHOS4_OVARY	RNF152--RP11-879F14.1	2	2	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	YES	22	0	0.15	1	0.0229	0.0229	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	JHOS4_OVARY	0.15	1	0.0458	FALSE	119	124	24	18	0	FALSE	ACH-000584
JHOS4_OVARY	FGFR2--COL14A1	2	1	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	83	0	0.03	1	0.0229	0.0114	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	JHOS4_OVARY	0.03	1	0.0343	TRUE	0	0	0	32	0	FALSE	ACH-000584
JHOS4_OVARY	KLF5--RP11-1055B8.7	2	1	KLF5	6989	chr13:73638021:+	RP11-1055B8.7	33903	chr17:79425191:+	ONLY_REF_SPLICE	YES	89	11	0.03	0.21	0.0229	0.0114	KLF5->Kruppel-like_factor_5_(intestinal),Oncogene{Bushman},chr13:73629114-73651676:+,RP11-1055B8.7->chr17:79373540-79433357:+	JHOS4_OVARY	0.03	0.21	0.0343	TRUE	0	0	0	1	0	FALSE	ACH-000584
JHOS4_OVARY	MALT1--RP11-126O1.2	2	1	MALT1	3118	chr18:56348568:+	RP11-126O1.2	25888	chr18:56233694:+	ONLY_REF_SPLICE	YES	152	0	0.02	1	0.0229	0.0114	MALT1->MALT1_paracaspase,Oncogene{Bushman},chr18:56338618-56417371:+,RP11-126O1.2->chr18:56224302-56233909:+	JHOS4_OVARY	0.02	1	0.0343	TRUE	0	0	0	1	0	FALSE	ACH-000584
JHOS4_OVARY	CBS--U2AF1	2	0	CBS	7451	chr21:44488619:-	U2AF1	35068	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LOCAL_REARRANGEMENT:-:[16013],CBS->chr21:44473301-44497053:-,cystathionine-beta-synthase,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	JHOS4_OVARY	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	DDX17--AP000345.1	1	4	DDX17	2460	chr22:38901956:-	AP000345.1	25288	chr22:23822687:-	ONLY_REF_SPLICE	NO	173	1	0.03	0.83	0.0114	0.0458	DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-,AP000345.1->chr22:23804273-23829167:-	JHOS4_OVARY	0.03	0.83	0.0572	TRUE	0	0	0	1	0	FALSE	ACH-000584
JHOS4_OVARY	NUDT16--DNAJC13	2	0	NUDT16	1645	chr3:131101159:+	DNAJC13	33933	chr3:132199213:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	NUDT16->chr3:131100515-131107674:+,nudix_hydrolase_16,DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+	JHOS4_OVARY	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	OSGIN2--RIPK2	2	0	OSGIN2	4804	chr8:90926974:+	RIPK2	16043	chr8:90775057:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],OSGIN2->chr8:90914087-90940116:+,oxidative_stress_induced_growth_inhibitor_family_member_2,RIPK2->chr8:90769975-90803291:+,receptor_interacting_serine/threonine_kinase_2	JHOS4_OVARY	1	1	0.0229	TRUE	0	1	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	RP11-1379J22.5--UBE2D2	2	0	RP11-1379J22.5	1720	chr5:179085482:+	UBE2D2	10384	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	RP11-1379J22.5->chr5:179084763-179091433:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	JHOS4_OVARY	1	1	0.0229	TRUE	0	5	0	5	2	TRUE	ACH-000584
JHOS4_OVARY	AC003102.3--SLC25A39	1	2	AC003102.3	2225	chr17:42388753:-	SLC25A39	16460	chr17:42400711:-	ONLY_REF_SPLICE	YES	4	646	0.43	0	0.0114	0.0229	LOCAL_REARRANGEMENT:-:[4310],AC003102.3->chr17:42376942-42392683:-,SLC25A39->chr17:42396993-42402238:-,solute_carrier_family_25_member_39	JHOS4_OVARY	0	0.43	0.0343	FALSE	0	0	0	1	0	FALSE	ACH-000584
JHOS4_OVARY	LGALS8--EDARADD	1	2	LGALS8	5228	chr1:236689415:+	EDARADD	32234	chr1:236645567:+	ONLY_REF_SPLICE	NO	217	2	0.01	0.6	0.0114	0.0229	LOCAL_REARRANGEMENT:+:[33086],LGALS8->chr1:236681300-236716281:+,lectin,_galactoside_binding_soluble_8,EDARADD->EDAR-associated_death_domain,chr1:236511562-236648214:+	JHOS4_OVARY	0.01	0.6	0.0343	FALSE	0	1	0	1	1	FALSE	ACH-000584
JHOS4_OVARY	RNF213--SLC26A11	1	2	RNF213	2242	chr17:78237577:+	SLC26A11	95731	chr17:78225128:+	ONLY_REF_SPLICE	YES	50	196	0.06	0.02	0.0114	0.0229	LOCAL_REARRANGEMENT:+:[7366],RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,SLC26A11->Oncogene{Bushman},chr17:78193498-78227299:+,solute_carrier_family_26_member_11	JHOS4_OVARY	0.02	0.06	0.0343	TRUE	0	0	0	1	0	FALSE	ACH-000584
JHOS4_OVARY	RP11-141M1.3--STARD13	1	2	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	3	1	0.5	0.0114	0.0229	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	JHOS4_OVARY	0.5	1	0.0343	FALSE	49	120	16	70	0	FALSE	ACH-000584
JHOS4_OVARY	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	80	1	0.04	0.0114	0.0229	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHOS4_OVARY	0.04	1	0.0343	TRUE	64	13	3	59	0	FALSE	ACH-000584
JHOS4_OVARY	CHD2--CCNL2	1	1	CHD2	6529	chr15:93444529:+	CCNL2	65894	chr1:1326245:-	ONLY_REF_SPLICE	YES	46	120	0.04	0.02	0.0114	0.0114	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,CCNL2->chr1:1321091-1334708:-,cyclin_L2	JHOS4_OVARY	0.02	0.04	0.0228	TRUE	0	1	0	2	0	FALSE	ACH-000584
JHOS4_OVARY	KLHL3--AC004540.5	1	1	KLHL3	4411	chr5:137045439:-	AC004540.5	42153	chr7:26533415:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0114	0.0114	KLHL3->chr5:136953189-137071779:-,kelch_like_family_member_3,AC004540.5->chr7:26438213-26538594:+	JHOS4_OVARY	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000584
JHOS4_OVARY	MED15--JAG1	1	1	MED15	24347	chr22:20940113:+	JAG1	30194	chr20:10653654:-	ONLY_REF_SPLICE	YES	97	158	0.02	0.01	0.0114	0.0114	MED15->chr22:20850200-20941919:+,mediator_complex_subunit_15,JAG1->Oncogene{Bushman},chr20:10618332-10654694:-,chr20:10625847-10627014:-,jagged_1	JHOS4_OVARY	0.01	0.02	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000584
JHOS4_OVARY	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0114	0.0114	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	JHOS4_OVARY	1	1	0.0228	FALSE	81	155	12	160	0	FALSE	ACH-000584
JHOS4_OVARY	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	26750	chr13:33716510:-	ONLY_REF_SPLICE	NO	1	4	0.67	0.33	0.0114	0.0114	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	JHOS4_OVARY	0.33	0.67	0.0228	FALSE	1	5	1	7	0	FALSE	ACH-000584
CAL62_THYROID	TIMM23B--LINC00843	103	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.98	1.1247	0.3385	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAL62_THYROID	0.98	1	1.4632	TRUE	508	994	45	981	0	FALSE	ACH-000174
CAL62_THYROID	TIMM23--RP11-464F9.1	79	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	395	5	0.17	0.94	0.8627	0.0437	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAL62_THYROID	0.17	0.94	0.9064	TRUE	519	3926	326	965	0	FALSE	ACH-000174
CAL62_THYROID	LTBP2--BATF	57	48	LTBP2	9782	chr14:75016566:-	BATF	38245	chr14:75991427:+	ONLY_REF_SPLICE	YES	95	0	0.53	1	0.6224	0.5241	LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2,BATF->Oncogene{Bushman},basic_leucine_zipper_ATF-like_transcription_factor,chr14:75988768-76013358:+	CAL62_THYROID	0.53	1	1.1465	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	ZNF654--HMGB2	40	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4368	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CAL62_THYROID	1	1	0.4368	TRUE	0	0	0	518	0	FALSE	ACH-000174
CAL62_THYROID	MT-TA--MT-TC	37	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.404	0.0983	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL62_THYROID	1	1	0.5023	FALSE	462	80	0	856	0	FALSE	ACH-000174
CAL62_THYROID	LTBP2--BATF	28	37	LTBP2	8679	chr14:75017767:-	BATF	38245	chr14:75991427:+	ONLY_REF_SPLICE	YES	121	0	0.35	1	0.3058	0.404	LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2,BATF->Oncogene{Bushman},basic_leucine_zipper_ATF-like_transcription_factor,chr14:75988768-76013358:+	CAL62_THYROID	0.35	1	0.7098	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	EEF2--MT2A	15	57	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	3408	54	0.02	0.57	0.1638	0.6224	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	CAL62_THYROID	0.02	0.57	0.7862	TRUE	1	0	0	19	0	FALSE	ACH-000174
CAL62_THYROID	MYH9--MT2A	17	25	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	780	54	0.05	0.44	0.1856	0.273	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	CAL62_THYROID	0.05	0.44	0.4586	TRUE	0	0	0	24	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND6--MT-ND5	23	0	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2512	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	CAL62_THYROID	1	1	0.2512	FALSE	101	855	57	72	0	FALSE	ACH-000174
CAL62_THYROID	CALM3--MT-ND4L	14	23	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2405	0	0.02	1	0.1529	0.2512	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL62_THYROID	0.02	1	0.4041	FALSE	1	1	0	107	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	19	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	12965	6	0	0.77	0.2075	0.0109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	0.77	0.2184	FALSE	230	193	14	283	0	FALSE	ACH-000174
CAL62_THYROID	EEF2--MT2A	7	47	EEF2	8201	chr19:3978111:-	MT2A	13651	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	6665	56	0.01	0.49	0.0764	0.5132	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	CAL62_THYROID	0.01	0.49	0.5896	TRUE	0	0	0	2	0	FALSE	ACH-000174
CAL62_THYROID	EEF2--MT2A	5	47	EEF2	8203	chr19:3978109:-	MT2A	13654	chr16:56642506:+	INCL_NON_REF_SPLICE	YES	6655	51	0.01	0.5	0.0546	0.5132	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	CAL62_THYROID	0.01	0.5	0.5678	TRUE	0	0	0	2	0	FALSE	ACH-000174
CAL62_THYROID	EEF2--MT2A	7	37	EEF2	7125	chr19:3979343:-	MT2A	13651	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	7190	56	0.01	0.44	0.0764	0.404	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	CAL62_THYROID	0.01	0.44	0.4804	TRUE	0	0	0	6	0	FALSE	ACH-000174
CAL62_THYROID	NPM1P24--SET	16	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1747	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CAL62_THYROID	1	1	0.1747	TRUE	0	0	0	434	0	FALSE	ACH-000174
CAL62_THYROID	EEF2--MT2A	5	36	EEF2	9846	chr19:3976466:-	MT2A	13683	chr16:56642535:+	INCL_NON_REF_SPLICE	YES	2943	49	0.01	0.46	0.0546	0.3931	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	CAL62_THYROID	0.01	0.46	0.4477	TRUE	1	0	0	19	0	FALSE	ACH-000174
CAL62_THYROID	ZNRF3--RP11-343K8.3	12	5	ZNRF3	6765	chr22:29440878:+	RP11-343K8.3	21724	chr17:55999805:+	INCL_NON_REF_SPLICE	YES	17	0	0.5	1	0.131	0.0546	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,RP11-343K8.3->chr17:55989694-55999942:+	CAL62_THYROID	0.5	1	0.1856	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	CAMSAP2--DIO1	9	13	CAMSAP2	2669	chr1:200730226:+	DIO1	27602	chr1:54359987:+	ONLY_REF_SPLICE	YES	31	0	0.42	1	0.0983	0.142	CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+,DIO1->chr1:54356912-54376759:+,deiodinase,_iodothyronine_type_I	CAL62_THYROID	0.42	1	0.2403	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	MT-ATP6--MT-RNR2	12	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.131	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL62_THYROID	1	1	0.131	FALSE	63	17	1	58	0	FALSE	ACH-000174
CAL62_THYROID	MT-ATP6--MT-RNR2	10	6	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	12252	0	0	1	0.1092	0.0655	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL62_THYROID	0	1	0.1747	FALSE	63	17	1	58	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	7	18	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14688	74	0	0.25	0.0764	0.1966	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	0.25	0.273	FALSE	231	217	16	283	0	FALSE	ACH-000174
CAL62_THYROID	FNIP1--AC034228.7	9	7	FNIP1	3450	chr5:131066597:-	AC034228.7	38899	chr5:131154556:-	ONLY_REF_SPLICE	YES	55	0	0.23	1	0.0983	0.0764	LOCAL_REARRANGEMENT:-:[10106],FNIP1->Oncogene{Bushman},chr5:130977407-131132710:-,folliculin_interacting_protein_1,AC034228.7->chr5:131142816-131281391:-	CAL62_THYROID	0.23	1	0.1747	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	MT-TA--MT-TC	8	11	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0874	0.1201	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL62_THYROID	1	1	0.2075	FALSE	462	80	0	856	0	FALSE	ACH-000174
CAL62_THYROID	HSP90AB1--MT-RNR2	10	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4560	0	0	1	0.1092	0.0218	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL62_THYROID	0	1	0.131	FALSE	13	9	0	364	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	10	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13066	9	0	0.55	0.1092	0.0109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	0.55	0.1201	FALSE	230	198	14	283	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	6	17	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16315	74	0	0.24	0.0655	0.1856	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	0.24	0.2511	FALSE	231	217	16	283	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	10	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15416	9	0	0.55	0.1092	0.0109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	0.55	0.1201	FALSE	231	205	14	283	0	FALSE	ACH-000174
CAL62_THYROID	NRIP1--AF127936.7	10	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.1092	0.0109	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL62_THYROID	0.85	1	0.1201	FALSE	292	1546	117	613	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	7	12	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18887	0	0	1	0.0764	0.131	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	1	0.2074	FALSE	231	217	16	283	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	3	26	MT-ND4	2176	chrM:11935:+	MT-ATP8	5382	chrM:8369:+	INCL_NON_REF_SPLICE	YES	7140	0	0	1	0.0328	0.2839	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	1	0.3167	FALSE	231	215	16	283	0	FALSE	ACH-000174
CAL62_THYROID	RP11-680G10.1--GSE1	8	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	24	1	0.35	0.0874	0.0546	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAL62_THYROID	0.35	1	0.142	TRUE	465	1949	224	605	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	5	15	MT-ND4	1538	chrM:11297:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	21338	111	0	0.15	0.0546	0.1638	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	0.15	0.2184	FALSE	231	217	16	283	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	3	22	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	15535	0	0	1	0.0328	0.2402	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	1	0.273	FALSE	231	217	16	283	0	FALSE	ACH-000174
CAL62_THYROID	MYH9--MT2A	3	22	MYH9	40281	chr22:36678639:-	MT2A	45018	chr16:56642535:+	INCL_NON_REF_SPLICE	YES	774	49	0.03	0.34	0.0328	0.2402	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	CAL62_THYROID	0.03	0.34	0.273	TRUE	0	0	0	24	0	FALSE	ACH-000174
CAL62_THYROID	RP11-680G10.1--GSE1	7	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	16	1	0.45	0.0764	0.0655	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAL62_THYROID	0.45	1	0.1419	TRUE	458	1351	185	561	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	3	21	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	17380	0	0	1	0.0328	0.2293	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	1	0.2621	FALSE	231	217	16	283	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	3	21	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	17151	0	0	1	0.0328	0.2293	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	1	0.2621	FALSE	231	217	16	283	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	4	16	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17385	9	0	0.69	0.0437	0.1747	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	0.69	0.2184	FALSE	231	217	16	283	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	3	20	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	16753	0	0	1	0.0328	0.2184	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	1	0.2512	FALSE	231	217	16	283	0	FALSE	ACH-000174
CAL62_THYROID	MT-ATP6--MT-RNR2	6	6	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	11703	6658	0	0	0.0655	0.0655	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL62_THYROID	0	0	0.131	FALSE	63	17	1	58	0	FALSE	ACH-000174
CAL62_THYROID	MT-ATP6--MT-RNR2	6	6	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	12252	6835	0	0	0.0655	0.0655	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL62_THYROID	0	0	0.131	FALSE	63	17	1	58	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-CO2	7	1	MT-ND4	1209	chrM:10968:+	MT-CO2	5522	chrM:7729:+	INCL_NON_REF_SPLICE	NO	12966	8376	0	0	0.0764	0.0109	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAL62_THYROID	0	0	0.0873	FALSE	5	1	0	19	0	FALSE	ACH-000174
CAL62_THYROID	MT-ATP6--MT-RNR2	7	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0764	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL62_THYROID	1	1	0.0764	FALSE	63	17	1	58	0	FALSE	ACH-000174
CAL62_THYROID	NRIP1--AF127936.7	6	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.56	1	0.0655	0.0437	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL62_THYROID	0.56	1	0.1092	FALSE	164	806	69	479	0	FALSE	ACH-000174
CAL62_THYROID	RP11-120D5.1--MID1	6	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	10	17	0.5	0.37	0.0655	0.0437	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CAL62_THYROID	0.37	0.5	0.1092	FALSE	16	356	14	466	0	FALSE	ACH-000174
CAL62_THYROID	VEZF1--ZNRF3	5	5	VEZF1	1181	chr17:56065440:-	ZNRF3	22075	chr22:29442704:+	ONLY_REF_SPLICE	YES	69	16	0.13	0.38	0.0546	0.0546	VEZF1->chr17:56048910-56065620:-,vascular_endothelial_zinc_finger_1,ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3	CAL62_THYROID	0.13	0.38	0.1092	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	3	12	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	18889	0	0	1	0.0328	0.131	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	1	0.1638	FALSE	231	217	16	283	0	FALSE	ACH-000174
CAL62_THYROID	HSP90AB1--MT-RNR2	5	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4597	0	0	1	0.0546	0.0218	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL62_THYROID	0	1	0.0764	FALSE	13	9	0	364	0	FALSE	ACH-000174
CAL62_THYROID	MT-TA--MT-TC	4	6	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0437	0.0655	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL62_THYROID	1	1	0.1092	FALSE	462	80	0	856	0	FALSE	ACH-000174
CAL62_THYROID	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0546	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL62_THYROID	1	1	0.0546	FALSE	63	17	1	58	0	FALSE	ACH-000174
CAL62_THYROID	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0546	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CAL62_THYROID	1	1	0.0546	TRUE	0	0	0	518	0	FALSE	ACH-000174
CAL62_THYROID	ASAP2--KLF11	4	2	ASAP2	21276	chr2:9525487:+	KLF11	37421	chr2:10186277:+	ONLY_REF_SPLICE	YES	86	8	0.07	0.43	0.0437	0.0218	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,KLF11->Kruppel-like_factor_11,chr2:10182976-10194963:+	CAL62_THYROID	0.07	0.43	0.0655	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	MT-ATP6--MT-RNR2	3	6	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	11756	6629	0	0	0.0328	0.0655	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL62_THYROID	0	0	0.0983	FALSE	63	17	1	58	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	3	6	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	18965	1579	0	0.01	0.0328	0.0655	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	0.01	0.0983	FALSE	231	205	14	283	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-CO2	4	2	MT-ND4	1426	chrM:11185:+	MT-CO2	5459	chrM:7666:+	INCL_NON_REF_SPLICE	NO	19798	2	0	0.75	0.0437	0.0218	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAL62_THYROID	0	0.75	0.0655	FALSE	5	1	0	19	0	FALSE	ACH-000174
CAL62_THYROID	RP11-123O10.4--GRIP1	4	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0437	0.0218	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAL62_THYROID	1	1	0.0655	FALSE	416	2512	207	587	0	FALSE	ACH-000174
CAL62_THYROID	LPAR3--MCOLN2	4	1	LPAR3	2973	chr1:85331068:-	MCOLN2	20100	chr1:85403765:-	ONLY_REF_SPLICE	YES	0	17	1	0.23	0.0437	0.0109	LOCAL_REARRANGEMENT:-:[32372],LPAR3->chr1:85277285-85358896:-,lysophosphatidic_acid_receptor_3,MCOLN2->chr1:85391268-85462796:-,mucolipin_2	CAL62_THYROID	0.23	1	0.0546	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	MT-ATP6--MT-RNR2	3	5	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	10606	0	0	1	0.0328	0.0546	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL62_THYROID	0	1	0.0874	FALSE	63	17	1	58	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	4	1	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	12984	0	0	1	0.0437	0.0109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	1	0.0546	FALSE	230	197	14	283	0	FALSE	ACH-000174
CAL62_THYROID	FNIP1--AC034228.7	3	4	FNIP1	2315	chr5:131080257:-	AC034228.7	38899	chr5:131154556:-	ONLY_REF_SPLICE	YES	67	0	0.09	1	0.0328	0.0437	LOCAL_REARRANGEMENT:-:[10106],FNIP1->Oncogene{Bushman},chr5:130977407-131132710:-,folliculin_interacting_protein_1,AC034228.7->chr5:131142816-131281391:-	CAL62_THYROID	0.09	1	0.0765	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0437	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL62_THYROID	1	1	0.0437	FALSE	63	17	1	58	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND6--MT-ND5	4	0	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0437	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	CAL62_THYROID	1	1	0.0437	FALSE	101	855	57	72	0	FALSE	ACH-000174
CAL62_THYROID	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0437	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CAL62_THYROID	1	1	0.0437	TRUE	0	0	0	434	0	FALSE	ACH-000174
CAL62_THYROID	NRIP1--AF127936.7	3	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.41	1	0.0328	0.0437	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL62_THYROID	0.41	1	0.0765	FALSE	125	705	46	456	0	FALSE	ACH-000174
CAL62_THYROID	RCC1--MRPL3	4	0	RCC1	2175	chr1:28834672:+	MRPL3	27527	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0437	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	CAL62_THYROID	1	1	0.0437	TRUE	0	0	0	6	0	TRUE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	3	3	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17615	0	0	1	0.0328	0.0328	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	1	0.0656	FALSE	231	205	14	283	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-CO2	3	3	MT-ND4	1496	chrM:11255:+	MT-CO2	5511	chrM:7718:+	INCL_NON_REF_SPLICE	YES	18839	6450	0	0	0.0328	0.0328	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAL62_THYROID	0	0	0.0656	FALSE	5	1	0	19	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-CO2	3	3	MT-ND4	1494	chrM:11253:+	MT-CO2	5509	chrM:7716:+	INCL_NON_REF_SPLICE	YES	18861	5830	0	0	0.0328	0.0328	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAL62_THYROID	0	0	0.0656	FALSE	5	1	0	19	0	FALSE	ACH-000174
CAL62_THYROID	RPSAP52--HMGA2	3	3	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	17	503	0.26	0.01	0.0328	0.0328	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	CAL62_THYROID	0.01	0.26	0.0656	FALSE	0	59	0	125	0	FALSE	ACH-000174
CAL62_THYROID	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0328	0.0218	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL62_THYROID	1	1	0.0546	FALSE	515	4851	409	746	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	3	1	MT-ND4	1208	chrM:10967:+	MT-ATP8	5422	chrM:8409:+	INCL_NON_REF_SPLICE	NO	12800	0	0	1	0.0328	0.0109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	1	0.0437	FALSE	230	193	14	283	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-ATP8	3	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12965	9	0	0.31	0.0328	0.0109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL62_THYROID	0	0.31	0.0437	FALSE	230	193	14	283	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-CO2	3	1	MT-ND4	1230	chrM:10989:+	MT-CO2	5522	chrM:7729:+	INCL_NON_REF_SPLICE	YES	13278	8376	0	0	0.0328	0.0109	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAL62_THYROID	0	0	0.0437	FALSE	5	1	0	19	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-CO2	3	1	MT-ND4	1214	chrM:10973:+	MT-CO2	5506	chrM:7713:+	INCL_NON_REF_SPLICE	YES	13120	4773	0	0	0.0328	0.0109	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAL62_THYROID	0	0	0.0437	FALSE	5	1	0	19	0	FALSE	ACH-000174
CAL62_THYROID	MT-ND4--MT-CO2	3	1	MT-ND4	1279	chrM:11038:+	MT-CO2	5527	chrM:7734:+	INCL_NON_REF_SPLICE	YES	15376	9085	0	0	0.0328	0.0109	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAL62_THYROID	0	0	0.0437	FALSE	5	1	0	19	0	FALSE	ACH-000174
CAL62_THYROID	FTH1--ACTB	3	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0328	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	CAL62_THYROID	1	1	0.0328	TRUE	1	0	0	97	0	FALSE	ACH-000174
CAL62_THYROID	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5387	chrM:2376:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0328	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL62_THYROID	1	1	0.0328	FALSE	63	17	1	58	0	FALSE	ACH-000174
CAL62_THYROID	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0328	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CAL62_THYROID	1	1	0.0328	TRUE	0	0	0	434	0	FALSE	ACH-000174
CAL62_THYROID	CAMSAP2--DIO1	2	3	CAMSAP2	2669	chr1:200730226:+	DIO1	30046	chr1:54370339:+	ONLY_REF_SPLICE	YES	31	2	0.14	0.71	0.0218	0.0328	CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+,DIO1->chr1:54356912-54376759:+,deiodinase,_iodothyronine_type_I	CAL62_THYROID	0.14	0.71	0.0546	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	RBBP8--CABLES1	2	2	RBBP8	17551	chr18:20562356:+	CABLES1	39457	chr18:20768802:+	ONLY_REF_SPLICE	YES	88	12	0.04	0.25	0.0218	0.0218	RBBP8->Oncogene{Bushman},chr18:20378224-20606451:+,retinoblastoma_binding_protein_8,CABLES1->Cdk5_and_Abl_enzyme_substrate_1,chr18:20714528-20840431:+	CAL62_THYROID	0.04	0.25	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	C17orf76-AS1--CNBP	2	1	C17orf76-AS1	1593	chr17:16342728:+	CNBP	14350	chr3:128890614:-	ONLY_REF_SPLICE	NO	211	1896	0.01	0	0.0218	0.0109	C17orf76-AS1->chr17:16342136-16381992:+,CNBP->CCHC-type_zinc_finger_nucleic_acid_binding_protein,chr3:128888327-128902765:-	CAL62_THYROID	0	0.01	0.0327	FALSE	0	0	0	1	0	FALSE	ACH-000174
CAL62_THYROID	RP11-155G15.2--RP11-1E3.1	2	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0.0109	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	CAL62_THYROID	1	1	0.0327	FALSE	46	201	11	112	0	FALSE	ACH-000174
CAL62_THYROID	ACSF3--ABCC1	2	0	ACSF3	2292	chr16:89160404:+	ABCC1	44487	chr16:16162013:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	ACSF3->acyl-CoA_synthetase_family_member_3,chr16:89154783-89222254:+,ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	C17orf76-AS1--UBAP2	2	0	C17orf76-AS1	1593	chr17:16342728:+	UBAP2	31037	chr9:33948585:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	C17orf76-AS1->chr17:16342136-16381992:+,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	2	0	TRUE	ACH-000174
CAL62_THYROID	C17orf76-AS1--UBAP2	2	0	C17orf76-AS1	1593	chr17:16342728:+	UBAP2	37935	chr9:33933626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	C17orf76-AS1->chr17:16342136-16381992:+,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	CAL62_THYROID	1	1	0.0218	TRUE	347	1186	183	220	0	FALSE	ACH-000174
CAL62_THYROID	EIF3H--MED30	2	0	EIF3H	3765	chr8:117767905:-	MED30	26513	chr8:118552122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,MED30->chr8:118532952-118552501:+,mediator_complex_subunit_30	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	IVD--TIMM50	2	0	IVD	9727	chr15:40708561:+	TIMM50	25482	chr19:39976184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	IVD->chr15:40697686-40728146:+,isovaleryl-CoA_dehydrogenase,TIMM50->chr19:39971052-39984422:+,translocase_of_inner_mitochondrial_membrane_50	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	KRTCAP3--PHF14	2	0	KRTCAP3	2167	chr2:27666399:+	PHF14	31629	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	KRTCAP3->chr2:27665233-27669348:+,keratinocyte_associated_protein_3,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	MAGI3--RSBN1	2	0	MAGI3	10603	chr1:114157280:+	RSBN1	38435	chr1:114320430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	LOCAL_INVERSION:+:-:[75909],MAGI3->chr1:113933371-114228545:+,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_3,RSBN1->chr1:114304454-114355098:-,round_spermatid_basic_protein_1	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	PCMTD1--TRPC1	2	0	PCMTD1	7395	chr8:52758221:-	TRPC1	24223	chr3:142467100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,TRPC1->chr3:142442916-142526730:+,transient_receptor_potential_cation_channel_subfamily_C_member_1	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	RAB7A--TFG	2	0	RAB7A	1238	chr3:128445202:+	TFG	19001	chr3:100455420:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	RP13-578N3.3--GAB1	2	0	RP13-578N3.3	2178	chr4:144660270:+	GAB1	29439	chr4:144387256:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	RP13-578N3.3->chr4:144621410-144786225:+,GAB1->GRB2_associated_binding_protein_1,Oncogene{Bushman},chr4:144257915-144395721:+	CAL62_THYROID	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	YWHAE--CRK	1	4	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	3964	158	0	0.03	0.0109	0.0437	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	CAL62_THYROID	0	0.03	0.0546	FALSE	6	50	7	115	0	FALSE	ACH-000174
CAL62_THYROID	GPR126--VTA1	1	2	GPR126	2987	chr6:142630781:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	YES	44	158	0.06	0.02	0.0109	0.0218	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	CAL62_THYROID	0.02	0.06	0.0327	TRUE	0	2	0	15	1	FALSE	ACH-000174
CAL62_THYROID	GPR126--VTA1	1	2	GPR126	2987	chr6:142630781:+	VTA1	40534	chr6:142510563:+	ONLY_REF_SPLICE	NO	44	155	0.06	0.02	0.0109	0.0218	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	CAL62_THYROID	0.02	0.06	0.0327	TRUE	0	0	0	2	0	FALSE	ACH-000174
CAL62_THYROID	RNF212--CTBP1	1	2	RNF212	6789	chr4:1090553:-	CTBP1	25519	chr4:1235307:-	ONLY_REF_SPLICE	YES	491	50	0.01	0.06	0.0109	0.0218	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[97886],RNF212->chr4:1050038-1107350:-,ring_finger_protein_212,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	CAL62_THYROID	0.01	0.06	0.0327	FALSE	1	6	0	5	1	FALSE	ACH-000174
CAL62_THYROID	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0109	0.0218	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL62_THYROID	1	1	0.0327	FALSE	407	2205	196	549	0	FALSE	ACH-000174
CAL62_THYROID	AGAP1--MRPS9	1	1	AGAP1	16940	chr2:236792093:+	MRPS9	44579	chr2:105705442:+	ONLY_REF_SPLICE	YES	80	324	0.02	0.01	0.0109	0.0109	AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,MRPS9->chr2:105654441-105716418:+,mitochondrial_ribosomal_protein_S9	CAL62_THYROID	0.01	0.02	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000174
CAL62_THYROID	ARHGEF28--BTF3	1	1	ARHGEF28	1165	chr5:72922147:+	BTF3	56982	chr5:72798313:+	ONLY_REF_SPLICE	NO	77	4224	0.03	0	0.0109	0.0109	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},ARHGEF28->Rho_guanine_nucleotide_exchange_factor_28,chr5:72921983-73237818:+,BTF3->basic_transcription_factor_3,chr5:72794233-72801460:+	CAL62_THYROID	0	0.03	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000174
CAL62_THYROID	ATXN2--BRAP	1	1	ATXN2	25275	chr12:111907912:-	BRAP	48334	chr12:112087846:-	ONLY_REF_SPLICE	NO	87	155	0.02	0.01	0.0109	0.0109	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Left_Ventricle=1},LOCAL_REARRANGEMENT:-:[42470],ATXN2->ataxin_2,chr12:111890018-112037480:-,BRAP->BRCA1_associated_protein,chr12:112079950-112123790:-	CAL62_THYROID	0.01	0.02	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000174
CAL62_THYROID	CPSF6--CHMP1A	1	1	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	237	388	0.01	0.01	0.0109	0.0109	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	CAL62_THYROID	0.01	0.01	0.0218	FALSE	95	74	6	34	0	FALSE	ACH-000174
CAL62_THYROID	DDX55--SLC25A27	1	1	DDX55	10363	chr12:124101150:+	SLC25A27	20635	chr6:46626699:+	ONLY_REF_SPLICE	YES	116	82	0.02	0.02	0.0109	0.0109	DDX55->DEAD-box_helicase_55,chr12:124086624-124105488:+,SLC25A27->chr6:46620678-46645930:+,solute_carrier_family_25_member_27	CAL62_THYROID	0.02	0.02	0.0218	TRUE	0	0	0	1	0	FALSE	ACH-000174
CAL62_THYROID	EIF3E--NUDCD1	1	1	EIF3E	6301	chr8:109260842:-	NUDCD1	39966	chr8:110257710:-	ONLY_REF_SPLICE	YES	131	250	0.02	0.01	0.0109	0.0109	EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E,NUDCD1->NudC_domain_containing_1,chr8:110253148-110346614:-	CAL62_THYROID	0.01	0.02	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000174
CAL62_THYROID	FAM208B--GDI2	1	1	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	17	1008	0.11	0	0.0109	0.0109	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	CAL62_THYROID	0	0.11	0.0218	FALSE	0	6	0	16	3	FALSE	ACH-000174
CAL62_THYROID	FCHO2--PEAK1	1	1	FCHO2	21254	chr5:72364606:+	PEAK1	41141	chr15:77544868:-	ONLY_REF_SPLICE	YES	43	24	0.04	0.08	0.0109	0.0109	FCHO2->FCH_domain_only_2,chr5:72251808-72386349:+,PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1	CAL62_THYROID	0.04	0.08	0.0218	TRUE	0	0	0	1	0	FALSE	ACH-000174
CAL62_THYROID	LIMS1--FHL2	1	1	LIMS1	1194	chr2:109151050:+	FHL2	31989	chr2:106002997:-	ONLY_REF_SPLICE	YES	145	846	0.01	0	0.0109	0.0109	LIMS1->LIM_zinc_finger_domain_containing_1,chr2:109150857-109303702:+,FHL2->Oncogene{Bushman},chr2:105974169-106054970:-,four_and_a_half_LIM_domains_2	CAL62_THYROID	0	0.01	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000174
CAL62_THYROID	LINC00471--EEF2	1	1	LINC00471	1813	chr2:232378238:-	EEF2	9777	chr19:3982422:-	ONLY_REF_SPLICE	YES	0	6221	1	0	0.0109	0.0109	LINC00471->chr2:232373137-232379050:-,long_intergenic_non-protein_coding_RNA_471,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	CAL62_THYROID	0	1	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000174
CAL62_THYROID	LPAR3--MCOLN2	1	1	LPAR3	2973	chr1:85331068:-	MCOLN2	18950	chr1:85405385:-	ONLY_REF_SPLICE	YES	0	18	1	0.1	0.0109	0.0109	LOCAL_REARRANGEMENT:-:[32372],LPAR3->chr1:85277285-85358896:-,lysophosphatidic_acid_receptor_3,MCOLN2->chr1:85391268-85462796:-,mucolipin_2	CAL62_THYROID	0.1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000174
CAL62_THYROID	MAPKAP1--PCID2	1	1	MAPKAP1	14210	chr9:128321912:-	PCID2	34591	chr13:113854830:-	ONLY_REF_SPLICE	YES	578	18	0	0.1	0.0109	0.0109	MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1,PCID2->PCI_domain_containing_2,chr13:113831891-113863029:-	CAL62_THYROID	0	0.1	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000174
CAL62_THYROID	NCOA2--B2M	1	1	NCOA2	1106	chr8:71315935:-	B2M	38976	chr15:45007621:+	ONLY_REF_SPLICE	NO	3	112	0.4	0.02	0.0109	0.0109	NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	CAL62_THYROID	0.02	0.4	0.0218	TRUE	0	0	0	1	0	FALSE	ACH-000174
CAL62_THYROID	OAZ1--PPP6R2	1	1	OAZ1	1259	chr19:2269743:+	PPP6R2	23324	chr22:50873395:+	ONLY_REF_SPLICE	YES	4665	151	0	0.01	0.0109	0.0109	GTEx_FI:{Blood=[count:2=pct:1.1],Lung=[count:1=pct:0.6],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=6;pct=0.07%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Artery_-_Tibial=1,Lung=1,Whole_Blood=1,Colon_-_Sigmoid=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2	CAL62_THYROID	0	0.01	0.0218	FALSE	6	1	0	7	0	FALSE	ACH-000174
CAL62_THYROID	PDHX--CD44	1	1	PDHX	1987	chr11:34938362:+	CD44	37425	chr11:35236399:+	ONLY_REF_SPLICE	YES	205	716	0.01	0	0.0109	0.0109	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	CAL62_THYROID	0	0.01	0.0218	FALSE	0	1	0	9	0	FALSE	ACH-000174
CAL62_THYROID	PTBP3--PTGR1	1	1	PTBP3	1198	chr9:115095750:-	PTGR1	31030	chr9:114348445:-	ONLY_REF_SPLICE	NO	149	559	0.01	0	0.0109	0.0109	PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	CAL62_THYROID	0	0.01	0.0218	FALSE	0	0	0	3	0	FALSE	ACH-000174
KPNSI9S_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	144	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.8071	0.389	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KPNSI9S_AUTONOMIC_GANGLIA	1	1	2.1961	TRUE	508	994	45	981	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	84	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	249	1	0.27	0.99	1.0542	0.0878	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KPNSI9S_AUTONOMIC_GANGLIA	0.27	0.99	1.142	TRUE	519	3926	326	965	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	COL5A2--AC079613.1	53	22	COL5A2	38216	chr2:189909905:-	AC079613.1	55069	chr2:189468484:-	ONLY_REF_SPLICE	YES	425	0	0.15	1	0.6651	0.2761	COL5A2->chr2:189896622-190044605:-,collagen_type_V_alpha_2,AC079613.1->chr2:189463518-189704171:-	KPNSI9S_AUTONOMIC_GANGLIA	0.15	1	0.9412	TRUE	0	0	0	1	0	TRUE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	136	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	10	0	0.93	1	0.0376	1.7067	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KPNSI9S_AUTONOMIC_GANGLIA	0.93	1	1.7443	FALSE	344	826	44	306	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	AP003900.6--AP000345.1	31	1	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	8	0	0.8	1	0.389	0.0125	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	KPNSI9S_AUTONOMIC_GANGLIA	0.8	1	0.4015	TRUE	4	17	0	31	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	ZNF654--HMGB2	31	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.389	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KPNSI9S_AUTONOMIC_GANGLIA	1	1	0.389	TRUE	0	0	0	518	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	5	98	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	6	0	0.94	1	0.0627	1.2299	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KPNSI9S_AUTONOMIC_GANGLIA	0.94	1	1.2926	FALSE	344	826	44	306	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	4	95	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.0502	1.1922	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KPNSI9S_AUTONOMIC_GANGLIA	0.97	1	1.2424	FALSE	344	821	44	306	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	94	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	55	0	0.64	1	0.0376	1.1797	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KPNSI9S_AUTONOMIC_GANGLIA	0.64	1	1.2173	FALSE	344	827	44	306	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	16	38	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	10617	0	0.01	1	0.2008	0.4769	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KPNSI9S_AUTONOMIC_GANGLIA	0.01	1	0.6777	FALSE	328	800	43	304	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	AP003900.6--AP000345.1	18	8	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	9	0	0.74	1	0.2259	0.1004	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	KPNSI9S_AUTONOMIC_GANGLIA	0.74	1	0.3263	TRUE	0	8	0	37	1	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ND5--MT-ATP6	12	7	MT-ND5	2730	chrM:14066:+	MT-ATP6	5767	chrM:8481:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.1506	0.0878	LOCAL_REARRANGEMENT:+:[3130],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KPNSI9S_AUTONOMIC_GANGLIA	1	1	0.2384	FALSE	7	8	0	2	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	12	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1506	0.0251	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPNSI9S_AUTONOMIC_GANGLIA	1	1	0.1757	FALSE	499	1288	110	792	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	COL5A2--AC079613.1	10	5	COL5A2	38216	chr2:189909905:-	AC079613.1	56167	chr2:189465336:-	ONLY_REF_SPLICE	YES	425	7	0.03	0.68	0.1255	0.0627	COL5A2->chr2:189896622-190044605:-,collagen_type_V_alpha_2,AC079613.1->chr2:189463518-189704171:-	KPNSI9S_AUTONOMIC_GANGLIA	0.03	0.68	0.1882	TRUE	0	0	0	1	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	10	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.71	0.1255	0.0251	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KPNSI9S_AUTONOMIC_GANGLIA	0.71	1	0.1506	TRUE	458	1351	185	561	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	HSPBP1--GRK5	10	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1255	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KPNSI9S_AUTONOMIC_GANGLIA	1	1	0.1255	TRUE	1	39	0	134	39	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	27	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	49	0	0.38	1	0.0376	0.3388	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KPNSI9S_AUTONOMIC_GANGLIA	0.38	1	0.3764	FALSE	344	827	44	306	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MIPEPP3--ABHD12	8	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1004	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	KPNSI9S_AUTONOMIC_GANGLIA	1	1	0.1004	TRUE	64	202	9	44	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	RP4-756H11.3--TPST1	8	0	RP4-756H11.3	1089	chr7:66119613:+	TPST1	14233	chr7:65751498:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1004	0	RP4-756H11.3->chr7:66119525-66134842:+,TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1	KPNSI9S_AUTONOMIC_GANGLIA	1	1	0.1004	TRUE	0	0	0	1	0	TRUE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	18	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	17	0	0.55	1	0.0376	0.2259	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KPNSI9S_AUTONOMIC_GANGLIA	0.55	1	0.2635	FALSE	344	826	44	306	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	AP003900.6--RP11-435B5.4	7	0	AP003900.6	1122	chr21:11169841:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0878	0	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	KPNSI9S_AUTONOMIC_GANGLIA	1	1	0.0878	TRUE	1	3	0	6	3	TRUE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	6	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0753	0.0376	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPNSI9S_AUTONOMIC_GANGLIA	0.82	1	0.1129	FALSE	499	1288	110	792	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0753	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KPNSI9S_AUTONOMIC_GANGLIA	1	1	0.0753	FALSE	292	1546	117	613	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	5	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0627	0.0376	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KPNSI9S_AUTONOMIC_GANGLIA	0.89	1	0.1003	TRUE	477	1352	189	275	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	5	2	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0627	0.0251	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KPNSI9S_AUTONOMIC_GANGLIA	0.88	1	0.0878	FALSE	344	821	44	306	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	5	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	11139	24015	0	0	0.0627	0.0125	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KPNSI9S_AUTONOMIC_GANGLIA	0	0	0.0752	FALSE	183	104	9	328	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ND5--MT-ATP6	4	4	MT-ND5	2718	chrM:14054:+	MT-ATP6	5911	chrM:8625:+	INCL_NON_REF_SPLICE	YES	2	4	0.8	0.67	0.0502	0.0502	LOCAL_REARRANGEMENT:+:[3130],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KPNSI9S_AUTONOMIC_GANGLIA	0.67	0.8	0.1004	FALSE	7	8	0	2	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	4	1	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3297	24237	0	0	0.0502	0.0125	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KPNSI9S_AUTONOMIC_GANGLIA	0	0	0.0627	FALSE	183	104	9	328	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ND5--MT-ATP6	3	5	MT-ND5	2449	chrM:13785:+	MT-ATP6	5754	chrM:8468:+	INCL_NON_REF_SPLICE	NO	1281	0	0.01	1	0.0376	0.0627	LOCAL_REARRANGEMENT:+:[3130],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KPNSI9S_AUTONOMIC_GANGLIA	0.01	1	0.1003	FALSE	7	8	0	2	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	37	1	0.12	0.0502	0.0125	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KPNSI9S_AUTONOMIC_GANGLIA	0.12	1	0.0627	TRUE	465	1949	224	605	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0376	0.0376	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KPNSI9S_AUTONOMIC_GANGLIA	0.86	1	0.0752	FALSE	467	2173	244	435	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.75	0.86	0.0376	0.0376	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KPNSI9S_AUTONOMIC_GANGLIA	0.75	0.86	0.0752	FALSE	515	4851	409	746	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	2	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0376	0.0251	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KPNSI9S_AUTONOMIC_GANGLIA	0.62	1	0.0627	FALSE	344	821	44	306	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	3	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	11040	23443	0	0	0.0376	0.0125	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KPNSI9S_AUTONOMIC_GANGLIA	0	0	0.0501	FALSE	183	104	9	328	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	RP1-34H18.1--NAV3	3	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	2	1	0.67	0.0376	0.0125	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	KPNSI9S_AUTONOMIC_GANGLIA	0.67	1	0.0501	TRUE	254	575	65	124	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPNSI9S_AUTONOMIC_GANGLIA	1	1	0.0376	FALSE	499	1288	110	792	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	3	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0376	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KPNSI9S_AUTONOMIC_GANGLIA	1	1	0.0376	FALSE	125	705	46	456	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0251	0.0376	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KPNSI9S_AUTONOMIC_GANGLIA	0.71	1	0.0627	FALSE	407	2205	196	549	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	HIVEP3--CDH7	2	0	HIVEP3	9521	chr1:42166587:-	CDH7	33448	chr18:63429883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3,CDH7->cadherin_7,chr18:63417488-63548638:+	KPNSI9S_AUTONOMIC_GANGLIA	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	2	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KPNSI9S_AUTONOMIC_GANGLIA	1	1	0.0251	FALSE	164	806	69	479	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	PPM1G--COX8A	2	0	PPM1G	2455	chr2:27609956:-	COX8A	12539	chr11:63743697:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	PPM1G->chr2:27604061-27632554:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1G,COX8A->chr11:63742079-63744015:+,cytochrome_c_oxidase_subunit_8A	KPNSI9S_AUTONOMIC_GANGLIA	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0125	0.0376	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KPNSI9S_AUTONOMIC_GANGLIA	0.67	1	0.0501	FALSE	275	511	55	178	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	GNGT1--AC002076.10	1	2	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0125	0.0251	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	KPNSI9S_AUTONOMIC_GANGLIA	0.5	1	0.0376	FALSE	0	28	0	37	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	C22orf39--UFD1L	1	1	C22orf39	1855	chr22:19434901:-	UFD1L	40186	chr22:19445662:-	ONLY_REF_SPLICE	NO	48	158	0.04	0.01	0.0125	0.0125	LOCAL_REARRANGEMENT:-:[1678],C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,UFD1L->chr22:19437433-19466738:-,ubiquitin_fusion_degradation_1_like_(yeast)	KPNSI9S_AUTONOMIC_GANGLIA	0.01	0.04	0.025	FALSE	0	1	0	2	0	FALSE	ACH-000446
KPNSI9S_AUTONOMIC_GANGLIA	NDUFA4--PHF14	1	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	821	55	0	0.04	0.0125	0.0125	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	KPNSI9S_AUTONOMIC_GANGLIA	0	0.04	0.025	FALSE	19	32	3	60	0	FALSE	ACH-000446
JHESOAD1_OESOPHAGUS	MT-TA--MT-TC	93	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1299	0.0972	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHESOAD1_OESOPHAGUS	1	1	1.2271	FALSE	462	80	0	856	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	TIMM23B--LINC00843	68	37	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8262	0.4495	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHESOAD1_OESOPHAGUS	1	1	1.2757	TRUE	508	994	45	981	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	EIF3CL--RP11-57A19.4	65	31	EIF3CL	4096	chr16:28411192:-	RP11-57A19.4	17421	chr16:28671123:-	ONLY_REF_SPLICE	YES	360	0	0.21	1	0.7897	0.3766	EIF3CL->chr16:28390900-28415200:-,eukaryotic_translation_initiation_factor_3_subunit_C-like,RP11-57A19.4->chr16:28671017-28752102:-	JHESOAD1_OESOPHAGUS	0.21	1	1.1663	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	RP11-114H23.1--RP11-114H23.2	28	58	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	8	0	0.91	1	0.3402	0.7047	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	JHESOAD1_OESOPHAGUS	0.91	1	1.0449	FALSE	81	155	12	160	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	TIMM23--RP11-464F9.1	41	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	365	8	0.11	0.85	0.4981	0.0486	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JHESOAD1_OESOPHAGUS	0.11	0.85	0.5467	TRUE	519	3926	326	965	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	PLEKHF1--DPY19L3	40	1	PLEKHF1	1450	chr19:30156412:+	DPY19L3	29263	chr19:32968428:+	ONLY_REF_SPLICE	YES	0	57	1	0.42	0.486	0.0121	PLEKHF1->chr19:30155963-30166364:+,pleckstrin_homology_and_FYVE_domain_containing_1,DPY19L3->chr19:32896449-32976801:+,dpy-19_like_3_(C._elegans)	JHESOAD1_OESOPHAGUS	0.42	1	0.4981	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	PLEKHF1--DPY19L3	35	1	PLEKHF1	1450	chr19:30156412:+	DPY19L3	25521	chr19:32955634:+	ONLY_REF_SPLICE	YES	0	32	1	0.53	0.4252	0.0121	PLEKHF1->chr19:30155963-30166364:+,pleckstrin_homology_and_FYVE_domain_containing_1,DPY19L3->chr19:32896449-32976801:+,dpy-19_like_3_(C._elegans)	JHESOAD1_OESOPHAGUS	0.53	1	0.4373	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	IQGAP1--ZNF710	29	20	IQGAP1	36161	chr15:91038067:+	ZNF710	46199	chr15:90610342:+	ONLY_REF_SPLICE	YES	317	1	0.13	0.98	0.3523	0.243	IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,ZNF710->chr15:90544624-90625438:+,zinc_finger_protein_710	JHESOAD1_OESOPHAGUS	0.13	0.98	0.5953	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	ZNF654--HMGB2	32	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3888	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JHESOAD1_OESOPHAGUS	1	1	0.3888	TRUE	0	0	0	518	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	KANSL1--ARL17B	19	11	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	40	109	0.43	0.22	0.2308	0.1336	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	JHESOAD1_OESOPHAGUS	0.22	0.43	0.3644	TRUE	181	1564	124	196	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	RP11-114H23.1--RP11-114H23.2	7	49	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	8	0	0.88	1	0.085	0.5953	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	JHESOAD1_OESOPHAGUS	0.88	1	0.6803	FALSE	81	155	12	160	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-TA--MT-TC	14	13	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1701	0.1579	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHESOAD1_OESOPHAGUS	1	1	0.328	FALSE	462	80	0	856	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-CO1--MT-ND1	15	7	MT-CO1	1577	chrM:6480:+	MT-ND1	5559	chrM:3323:+	INCL_NON_REF_SPLICE	YES	27634	0	0	1	0.1822	0.085	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHESOAD1_OESOPHAGUS	0	1	0.2672	FALSE	39	30	6	19	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	12	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.93	1	0.1458	0.1579	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHESOAD1_OESOPHAGUS	0.93	1	0.3037	FALSE	407	2205	196	549	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-TA--MT-TY	14	1	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1701	0.0121	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	JHESOAD1_OESOPHAGUS	1	1	0.1822	FALSE	13	214	14	42	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	ERN1--PCTP	10	16	ERN1	6569	chr17:62157022:-	PCTP	34326	chr17:53844696:+	ONLY_REF_SPLICE	YES	165	284	0.14	0.08	0.1215	0.1944	ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1,PCTP->chr17:53828340-53920191:+,phosphatidylcholine_transfer_protein	JHESOAD1_OESOPHAGUS	0.08	0.14	0.3159	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-TA--MT-TC	11	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1336	0.085	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHESOAD1_OESOPHAGUS	1	1	0.2186	FALSE	462	80	0	856	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	CEP89--CTC-523E23.8	10	7	CEP89	21768	chr19:33390763:-	CTC-523E23.8	29496	chr19:35414743:-	ONLY_REF_SPLICE	YES	69	0	0.2	1	0.1215	0.085	CEP89->centrosomal_protein_89,chr19:33369902-33462897:-,CTC-523E23.8->chr19:35414203-35417716:-	JHESOAD1_OESOPHAGUS	0.2	1	0.2065	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	C15orf57--CBX3	7	18	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	54	76	0.32	0.25	0.085	0.2187	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JHESOAD1_OESOPHAGUS	0.25	0.32	0.3037	TRUE	267	562	48	632	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-CO1--MT-ND1	7	15	MT-CO1	1653	chrM:6556:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	32835	7893	0	0	0.085	0.1822	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHESOAD1_OESOPHAGUS	0	0	0.2672	FALSE	39	30	6	19	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	RP11-114H23.1--RP11-114H23.2	6	19	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	8	15	0.76	0.62	0.0729	0.2308	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	JHESOAD1_OESOPHAGUS	0.62	0.76	0.3037	FALSE	81	155	12	160	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	9	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.1093	0.085	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHESOAD1_OESOPHAGUS	0.89	1	0.1943	FALSE	515	4851	409	746	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-TA--MT-TC	10	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1215	0.0243	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHESOAD1_OESOPHAGUS	1	1	0.1458	FALSE	462	80	0	856	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-CO3--MT-ATP6	10	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1215	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHESOAD1_OESOPHAGUS	1	1	0.1215	FALSE	189	492	56	216	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-ND6--MT-TE	8	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0972	0.0243	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHESOAD1_OESOPHAGUS	0.91	1	0.1215	FALSE	499	1288	110	792	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	RP11-120D5.1--MID1	6	7	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	8	180	0.62	0.07	0.0729	0.085	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHESOAD1_OESOPHAGUS	0.07	0.62	0.1579	FALSE	16	356	14	466	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	5	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0607	0.1093	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHESOAD1_OESOPHAGUS	1	1	0.17	FALSE	467	2173	244	435	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	AP000525.9--LA16c-60G3.6	5	7	AP000525.9	5082	chr22:16186811:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	249	0	0.05	1	0.0607	0.085	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	JHESOAD1_OESOPHAGUS	0.05	1	0.1457	TRUE	0	3	0	6	3	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	TMEM123--BIRC2	6	0	TMEM123	5695	chr11:102319543:-	BIRC2	22451	chr11:102248227:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0729	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},{Klijn_CCL:Brain=1},LOCAL_INVERSION:-:+:[17662],TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	JHESOAD1_OESOPHAGUS	1	1	0.0729	TRUE	1	3	0	8	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	LTBP4--SHKBP1	3	11	LTBP4	25066	chr19:41131914:+	SHKBP1	35835	chr19:41088257:+	ONLY_REF_SPLICE	YES	43	209	0.25	0.06	0.0364	0.1336	LOCAL_REARRANGEMENT:+:[1484],LTBP4->chr19:41098789-41135725:+,latent_transforming_growth_factor_beta_binding_protein_4,SHKBP1->SH3KBP1_binding_protein_1,chr19:41082757-41097305:+	JHESOAD1_OESOPHAGUS	0.06	0.25	0.17	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-CO1--MT-ND1	5	3	MT-CO1	1324	chrM:6227:+	MT-ND1	5558	chrM:3322:+	INCL_NON_REF_SPLICE	YES	26110	0	0	1	0.0607	0.0364	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHESOAD1_OESOPHAGUS	0	1	0.0971	FALSE	39	29	6	19	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-TA--MT-TC	3	10	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.1215	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHESOAD1_OESOPHAGUS	1	1	0.1579	FALSE	462	80	0	856	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-CO3--MT-ATP6	5	1	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	14	1	0.3	0.0607	0.0121	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHESOAD1_OESOPHAGUS	0.3	1	0.0728	FALSE	189	492	56	216	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	AP000525.9--LA16c-60G3.6	5	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	JHESOAD1_OESOPHAGUS	1	1	0.0607	TRUE	0	42	0	133	42	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-CO3--MT-ATP6	4	4	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	13	1	0.38	0.0486	0.0486	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHESOAD1_OESOPHAGUS	0.38	1	0.0972	FALSE	189	492	56	216	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-ND6--MT-TE	5	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHESOAD1_OESOPHAGUS	1	1	0.0607	FALSE	499	1288	110	792	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-ND6--MT-TE	4	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0486	0.0486	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHESOAD1_OESOPHAGUS	0.89	1	0.0972	FALSE	499	1288	110	792	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	SLC1A5--MT-ND4L	4	4	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	560	0	0.01	1	0.0486	0.0486	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHESOAD1_OESOPHAGUS	0.01	1	0.0972	FALSE	0	0	0	189	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-CO1--MT-ND1	3	7	MT-CO1	1585	chrM:6488:+	MT-ND1	5567	chrM:3331:+	INCL_NON_REF_SPLICE	YES	27063	0	0	1	0.0364	0.085	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHESOAD1_OESOPHAGUS	0	1	0.1214	FALSE	39	30	6	19	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-CO1--MT-ND1	3	7	MT-CO1	1642	chrM:6545:+	MT-ND1	6026	chrM:3790:+	INCL_NON_REF_SPLICE	YES	31588	9699	0	0	0.0364	0.085	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHESOAD1_OESOPHAGUS	0	0	0.1214	FALSE	39	30	6	19	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	1	15	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0121	0.1822	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHESOAD1_OESOPHAGUS	1	1	0.1943	FALSE	192	492	57	212	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-CO1--MT-ND1	4	2	MT-CO1	1653	chrM:6556:+	MT-ND1	6262	chrM:4026:+	INCL_NON_REF_SPLICE	YES	32835	5373	0	0	0.0486	0.0243	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHESOAD1_OESOPHAGUS	0	0	0.0729	FALSE	39	30	6	19	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-TA--MT-TY	4	2	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0.0243	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	JHESOAD1_OESOPHAGUS	1	1	0.0729	FALSE	13	214	14	42	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-CO1--MT-ND1	3	5	MT-CO1	1553	chrM:6456:+	MT-ND1	5757	chrM:3521:+	INCL_NON_REF_SPLICE	YES	27617	8136	0	0	0.0364	0.0607	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHESOAD1_OESOPHAGUS	0	0	0.0971	FALSE	39	30	6	19	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	PLEKHF1--DPY19L3	3	5	PLEKHF1	1740	chr19:30156702:+	DPY19L3	29263	chr19:32968428:+	ONLY_REF_SPLICE	YES	24	57	0.25	0.12	0.0364	0.0607	PLEKHF1->chr19:30155963-30166364:+,pleckstrin_homology_and_FYVE_domain_containing_1,DPY19L3->chr19:32896449-32976801:+,dpy-19_like_3_(C._elegans)	JHESOAD1_OESOPHAGUS	0.12	0.25	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	RP11-123O10.4--GRIP1	4	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0.0121	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHESOAD1_OESOPHAGUS	1	1	0.0607	FALSE	416	2512	207	587	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	C17orf76-AS1--ITGB3BP	4	0	C17orf76-AS1	1593	chr17:16342728:+	ITGB3BP	24528	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0	C17orf76-AS1->chr17:16342136-16381992:+,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	JHESOAD1_OESOPHAGUS	1	1	0.0486	TRUE	0	0	0	4	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHESOAD1_OESOPHAGUS	1	1	0.0486	FALSE	292	1546	117	613	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHESOAD1_OESOPHAGUS	1	1	0.0486	TRUE	465	1949	224	605	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-CO1--MT-ND1	3	3	MT-CO1	1558	chrM:6461:+	MT-ND1	6029	chrM:3793:+	INCL_NON_REF_SPLICE	YES	27530	9676	0	0	0.0364	0.0364	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHESOAD1_OESOPHAGUS	0	0	0.0728	FALSE	39	30	6	19	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	ERN1--KRT36	2	6	ERN1	24108	chr17:62122220:-	KRT36	34206	chr17:39645958:-	ONLY_REF_SPLICE	YES	151	24	0.05	0.25	0.0243	0.0729	ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1,KRT36->chr17:39642388-39648798:-,keratin_36	JHESOAD1_OESOPHAGUS	0.05	0.25	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-CO3--MT-ATP6	3	2	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.0243	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHESOAD1_OESOPHAGUS	1	1	0.0607	FALSE	189	492	56	216	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-CO3--MT-ATP6	3	2	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.0243	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHESOAD1_OESOPHAGUS	1	1	0.0607	FALSE	189	492	56	216	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-ND6--MT-TE	3	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0364	0.0243	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHESOAD1_OESOPHAGUS	0.83	1	0.0607	FALSE	499	1288	110	792	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	SLC1A5--MT-ND4L	3	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	556	0	0.01	1	0.0364	0.0243	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHESOAD1_OESOPHAGUS	0.01	1	0.0607	FALSE	0	0	0	189	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MT-TA--MT-TY	3	1	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.0121	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	JHESOAD1_OESOPHAGUS	1	1	0.0485	FALSE	13	214	14	42	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	PLEKHF1--DPY19L3	3	1	PLEKHF1	1450	chr19:30156412:+	DPY19L3	27835	chr19:32959637:+	ONLY_REF_SPLICE	YES	0	41	1	0.09	0.0364	0.0121	PLEKHF1->chr19:30155963-30166364:+,pleckstrin_homology_and_FYVE_domain_containing_1,DPY19L3->chr19:32896449-32976801:+,dpy-19_like_3_(C._elegans)	JHESOAD1_OESOPHAGUS	0.09	1	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	VTI1A--RP11-57H14.3	3	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	56	0	0.07	1	0.0364	0.0121	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	JHESOAD1_OESOPHAGUS	0.07	1	0.0485	FALSE	272	151	14	158	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	C17orf76-AS1--SEPT9	3	0	C17orf76-AS1	1593	chr17:16342728:+	SEPT9	45890	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	C17orf76-AS1->chr17:16342136-16381992:+,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	JHESOAD1_OESOPHAGUS	1	1	0.0364	TRUE	0	3	0	6	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	C2orf61--CALM2	3	0	C2orf61	7327	chr2:47335527:-	CALM2	22283	chr2:47397903:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:-:[4704],C2orf61->chr2:47272677-47382517:-,chromosome_2_open_reading_frame_61,CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-	JHESOAD1_OESOPHAGUS	1	1	0.0364	TRUE	0	1	0	4	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	MIR205HG--C9orf3	3	0	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	JHESOAD1_OESOPHAGUS	1	1	0.0364	TRUE	86	303	14	25	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	RP11-120D5.1--MID1	1	7	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	180	0.8	0.04	0.0121	0.085	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHESOAD1_OESOPHAGUS	0.04	0.8	0.0971	FALSE	2	31	0	60	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	PLEKHF1--DPY19L3	1	6	PLEKHF1	3047	chr19:30158087:+	DPY19L3	25521	chr19:32955634:+	ONLY_REF_SPLICE	YES	31	32	0.18	0.18	0.0121	0.0729	PLEKHF1->chr19:30155963-30166364:+,pleckstrin_homology_and_FYVE_domain_containing_1,DPY19L3->chr19:32896449-32976801:+,dpy-19_like_3_(C._elegans)	JHESOAD1_OESOPHAGUS	0.18	0.18	0.085	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	RP11-120D5.1--MID1	1	6	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	14	180	0.33	0.04	0.0121	0.0729	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHESOAD1_OESOPHAGUS	0.04	0.33	0.085	FALSE	0	48	1	163	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	RP11-166P13.3--SCPEP1	2	1	RP11-166P13.3	1185	chr17:55162201:-	SCPEP1	7430	chr17:55058443:+	ONLY_REF_SPLICE	YES	6	35	0.33	0.08	0.0243	0.0121	LOCAL_INVERSION:-:+:[71530],RP11-166P13.3->chr17:55155659-55162385:-,SCPEP1->chr17:55055466-55084129:+,serine_carboxypeptidase_1	JHESOAD1_OESOPHAGUS	0.08	0.33	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	ZNF738--CHMP1A	2	1	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	52	539	0.05	0.01	0.0243	0.0121	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	JHESOAD1_OESOPHAGUS	0.01	0.05	0.0364	FALSE	1	20	1	28	3	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	ADAP1--SUN1	1	4	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	378	1000	0.01	0	0.0121	0.0486	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	JHESOAD1_OESOPHAGUS	0	0.01	0.0607	FALSE	16	22	0	27	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	ATAD1--ADK	2	0	ATAD1	3968	chr10:89574195:-	ADK	26859	chr10:76153899:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},ATAD1->ATPase_family,_AAA_domain_containing_1,chr10:89511269-89601100:-,ADK->adenosine_kinase,chr10:75910960-76469061:+	JHESOAD1_OESOPHAGUS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	COA1--STK17A	2	0	COA1	1289	chr7:43769028:-	STK17A	27976	chr7:43635500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	NEIGHBORS_OVERLAP:-:+:[18330],COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,STK17A->chr7:43622357-43666385:+,serine/threonine_kinase_17a	JHESOAD1_OESOPHAGUS	1	1	0.0243	FALSE	0	3	1	13	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	CPSF6--C9orf3	2	0	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	JHESOAD1_OESOPHAGUS	1	1	0.0243	TRUE	53	99	2	44	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	ERVMER61-1--MED14	2	0	ERVMER61-1	1256	chr1:187610613:+	MED14	31261	chrX:40523741:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	ERVMER61-1->chr1:187610358-187612992:+,endogenous_retrovirus_group_MER61_member_1,MED14->chrX:40507558-40595110:-,mediator_complex_subunit_14	JHESOAD1_OESOPHAGUS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	NBAS--EGFR	2	0	NBAS	9359	chr2:15674667:-	EGFR	68056	chr7:55209979:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor	JHESOAD1_OESOPHAGUS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000216
JHESOAD1_OESOPHAGUS	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHESOAD1_OESOPHAGUS	1	1	0.0243	FALSE	25	145	6	90	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	3	0	0.5	1	0.0121	0.0243	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHESOAD1_OESOPHAGUS	0.5	1	0.0364	FALSE	164	806	69	479	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	ASAP2--S100A6	1	1	ASAP2	22529	chr2:9528675:+	S100A6	35071	chr1:153508467:-	ONLY_REF_SPLICE	YES	89	19	0.02	0.1	0.0121	0.0121	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	JHESOAD1_OESOPHAGUS	0.02	0.1	0.0242	TRUE	0	0	0	2	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	CRIM1--FEZ2	1	1	CRIM1	21418	chr2:36764689:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	307	229	0.01	0.01	0.0121	0.0121	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	JHESOAD1_OESOPHAGUS	0.01	0.01	0.0242	FALSE	1	4	0	11	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	DNAJC25--UGCG	1	1	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	172	304	0.01	0.01	0.0121	0.0121	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	JHESOAD1_OESOPHAGUS	0.01	0.01	0.0242	FALSE	50	73	10	50	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	INPP5A--PWWP2B	1	1	INPP5A	4583	chr10:134464009:+	PWWP2B	25739	chr10:134230565:+	ONLY_REF_SPLICE	YES	42	72	0.05	0.03	0.0121	0.0121	GTEx_FI:{Skin=[count:6=pct:1.9],Brain=[count:1=pct:0.2],Blood=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=6;pct=0.07%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Pancreas=1,Colon_-_Sigmoid=1},INPP5A->chr10:134351324-134596979:+,inositol_polyphosphate-5-phosphatase_A,PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+	JHESOAD1_OESOPHAGUS	0.03	0.05	0.0242	TRUE	1	1	0	1	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	LTBP4--SHKBP1	1	1	LTBP4	23913	chr19:41129987:+	SHKBP1	39403	chr19:41092680:+	ONLY_REF_SPLICE	YES	61	222	0.03	0.01	0.0121	0.0121	LOCAL_REARRANGEMENT:+:[1484],LTBP4->chr19:41098789-41135725:+,latent_transforming_growth_factor_beta_binding_protein_4,SHKBP1->SH3KBP1_binding_protein_1,chr19:41082757-41097305:+	JHESOAD1_OESOPHAGUS	0.01	0.03	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	MRPS5--KPNB1	1	1	MRPS5	8662	chr2:95772168:-	KPNB1	35529	chr17:45748068:+	ONLY_REF_SPLICE	YES	413	957	0	0	0.0121	0.0121	MRPS5->chr2:95752952-95815179:-,mitochondrial_ribosomal_protein_S5,KPNB1->chr17:45726842-45762871:+,karyopherin_subunit_beta_1	JHESOAD1_OESOPHAGUS	0	0	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	NUP107--DYNC1LI1	1	1	NUP107	2950	chr12:69082833:+	DYNC1LI1	38984	chr3:32576138:-	ONLY_REF_SPLICE	NO	297	128	0.01	0.02	0.0121	0.0121	NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa,DYNC1LI1->chr3:32567463-32612366:-,dynein_cytoplasmic_1_light_intermediate_chain_1	JHESOAD1_OESOPHAGUS	0.01	0.02	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	PTPRK--MAP7	1	1	PTPRK	5969	chr6:128718711:-	MAP7	57576	chr6:136742937:-	ONLY_REF_SPLICE	NO	111	15	0.02	0.12	0.0121	0.0121	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	JHESOAD1_OESOPHAGUS	0.02	0.12	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	RP11-624L4.1--RP11-265N7.1	1	1	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	21	0	0.09	1	0.0121	0.0121	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	JHESOAD1_OESOPHAGUS	0.09	1	0.0242	FALSE	0	20	1	20	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	TEAD1--PARVA	1	1	TEAD1	4496	chr11:12785981:+	PARVA	39860	chr11:12525861:+	ONLY_REF_SPLICE	YES	74	224	0.03	0.01	0.0121	0.0121	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	JHESOAD1_OESOPHAGUS	0.01	0.03	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000216
JHESOAD1_OESOPHAGUS	XKR9--LACTB2	1	1	XKR9	1174	chr8:71581773:+	LACTB2	20001	chr8:71556478:-	ONLY_REF_SPLICE	YES	32	202	0.06	0.01	0.0121	0.0121	LOCAL_INVERSION:+:-:[191],XKR9->XK_related_9,chr8:71581600-71702606:+,LACTB2->chr8:71547553-71581409:-,lactamase_beta_2	JHESOAD1_OESOPHAGUS	0.01	0.06	0.0242	FALSE	0	11	0	8	7	FALSE	ACH-000216
CAL54_KIDNEY	ANXA4--NUMB	272	68	ANXA4	7567	chr2:70015273:+	NUMB	43247	chr14:73763993:-	ONLY_REF_SPLICE	YES	2264	57	0.13	0.86	2.3546	0.5886	{Klijn_CCL:Kidney=1},ANXA4->annexin_A4,chr2:69871557-70053596:+,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	CAL54_KIDNEY	0.13	0.86	2.9432	TRUE	0	0	0	1	0	TRUE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TN	175	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5149	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL54_KIDNEY	1	1	1.5149	FALSE	369	2501	205	193	0	FALSE	ACH-000457
CAL54_KIDNEY	ANXA4--NUMB	105	13	ANXA4	6479	chr2:70008706:+	NUMB	43247	chr14:73763993:-	ONLY_REF_SPLICE	YES	560	57	0.17	0.67	0.9089	0.1125	{Klijn_CCL:Kidney=1},ANXA4->annexin_A4,chr2:69871557-70053596:+,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	CAL54_KIDNEY	0.17	0.67	1.0214	TRUE	0	0	0	1	0	TRUE	ACH-000457
CAL54_KIDNEY	TIMM23B--LINC00843	96	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.831	0.0952	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAL54_KIDNEY	0.98	1	0.9262	TRUE	508	994	45	981	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TC	88	15	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7618	0.1298	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL54_KIDNEY	1	1	0.8916	FALSE	462	80	0	856	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	21	235	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	32	1	0.89	1	0.1818	2.0343	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.89	1	2.2161	FALSE	344	826	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MSH5--PRRC2A	72	15	MSH5	5044	chr6:31712358:+	PRRC2A	38193	chr6:31604510:+	ONLY_REF_SPLICE	YES	25	116	0.78	0.43	0.6233	0.1298	MSH5->chr6:31707725-31732622:+,mutS_homolog_5,PRRC2A->chr6:31588497-31605548:+,proline_rich_coiled-coil_2A	CAL54_KIDNEY	0.43	0.78	0.7531	TRUE	0	0	0	1	0	TRUE	ACH-000457
CAL54_KIDNEY	MT-ND6--MT-TE	70	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.606	0.0346	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL54_KIDNEY	1	1	0.6406	FALSE	499	1288	110	792	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	65	10	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	NO	43	132	0.64	0.36	0.5627	0.0866	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0.36	0.64	0.6493	FALSE	92	22	4	61	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	6	239	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	33	1	0.88	1	0.0519	2.0689	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.88	1	2.1208	FALSE	344	826	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	25	162	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	4232	1	0.04	0.99	0.2164	1.4024	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.04	0.99	1.6188	FALSE	344	827	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	5	239	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	32	0	0.88	1	0.0433	2.0689	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.88	1	2.1122	FALSE	344	826	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	4	239	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	19	0	0.93	1	0.0346	2.0689	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.93	1	2.1035	FALSE	344	827	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	3	243	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	273	0	0.47	1	0.026	2.1035	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.47	1	2.1295	FALSE	344	827	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	4	239	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	19	0	0.93	1	0.0346	2.0689	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.93	1	2.1035	FALSE	344	827	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	5	233	MT-ND4	1144	chrM:10903:+	MT-ND4L	5529	chrM:10620:+	INCL_NON_REF_SPLICE	NO	21	1	0.92	1	0.0433	2.017	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.92	1	2.0603	FALSE	344	826	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	5	231	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	21	1	0.92	1	0.0433	1.9997	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.92	1	2.043	FALSE	344	826	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	3	229	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	14	0	0.94	1	0.026	1.9823	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.94	1	2.0083	FALSE	344	826	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	5	198	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	10	1	0.95	1	0.0433	1.714	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.95	1	1.7573	FALSE	344	826	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	10	169	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	7	1	0.96	0.99	0.0866	1.4629	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.96	0.99	1.5495	FALSE	344	821	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	RP4-565E6.1--HYDIN	50	7	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	11	1	0.84	0.4328	0.0606	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	CAL54_KIDNEY	0.84	1	0.4934	TRUE	456	1387	91	133	0	FALSE	ACH-000457
CAL54_KIDNEY	TIMM23--RP11-464F9.1	49	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	101	1	0.33	0.98	0.4242	0.0087	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAL54_KIDNEY	0.33	0.98	0.4329	TRUE	519	3926	326	965	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-CO2--MT-ND1	42	0	MT-CO2	1222	chrM:7807:+	MT-ND1	5168	chrM:3790:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3636	0	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CAL54_KIDNEY	1	1	0.3636	FALSE	12	14	1	5	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	32	39	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	4114	0	0.02	1	0.277	0.3376	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.02	1	0.6146	FALSE	344	827	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	3	152	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	44	1	0.78	0.99	0.026	1.3158	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.78	0.99	1.3418	FALSE	344	827	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	3	151	MT-ND4	1062	chrM:10821:+	MT-ND4L	5516	chrM:10607:+	INCL_NON_REF_SPLICE	YES	5	1	0.97	0.99	0.026	1.3071	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.97	0.99	1.3331	FALSE	344	821	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	26	54	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	10613	0	0.01	1	0.2251	0.4675	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.01	1	0.6926	FALSE	328	800	43	304	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TN	15	91	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1298	0.7877	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL54_KIDNEY	1	1	0.9175	FALSE	369	2501	205	193	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	30	14	MT-ND1	1291	chrM:3597:+	MT-RNR2	5713	chrM:2427:+	INCL_NON_REF_SPLICE	YES	18	10895	0.71	0	0.2597	0.1212	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0	0.71	0.3809	FALSE	120	26	5	87	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	17	65	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	18	0	0.82	1	0.1472	0.5627	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0.82	1	0.7099	FALSE	114	26	4	85	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TN	21	45	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1818	0.3895	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL54_KIDNEY	1	1	0.5713	FALSE	369	2501	205	193	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TN	24	32	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2078	0.277	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL54_KIDNEY	1	1	0.4848	FALSE	369	2501	205	193	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TC	28	15	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2424	0.1298	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL54_KIDNEY	1	1	0.3722	FALSE	462	80	0	856	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	30	2	MT-ND4	1151	chrM:10910:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	NO	8199	260	0	0.11	0.2597	0.0173	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.11	0.277	FALSE	230	193	14	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	11	71	MT-ND4	1489	chrM:11248:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	YES	267	0	0.23	1	0.0952	0.6146	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.23	1	0.7098	FALSE	344	827	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	HSP90AB1--MT-RNR2	28	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1627	0	0.02	1	0.2424	0.0087	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0.02	1	0.2511	FALSE	13	9	0	364	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND5--MT-ATP8	26	8	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.2251	0.0693	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0.89	1	0.2944	FALSE	43	37	8	105	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	7	78	MT-ND1	1435	chrM:3741:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	45	0	0.65	1	0.0606	0.6752	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0.65	1	0.7358	FALSE	114	26	4	85	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND6--MT-TE	24	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2078	0.0519	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL54_KIDNEY	1	1	0.2597	FALSE	499	1288	110	792	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	5	78	MT-ND1	1330	chrM:3636:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	24	0	0.78	1	0.0433	0.6752	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0.78	1	0.7185	FALSE	114	26	4	85	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND6--MT-TE	20	18	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.1731	0.1558	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL54_KIDNEY	0.93	1	0.3289	FALSE	499	1288	110	792	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TN	24	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2078	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL54_KIDNEY	1	1	0.2078	FALSE	369	2501	205	193	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TN	17	28	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1472	0.2424	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL54_KIDNEY	1	1	0.3896	FALSE	369	2501	205	193	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	5	75	MT-ND1	1297	chrM:3603:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	18	0	0.82	1	0.0433	0.6492	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0.82	1	0.6925	FALSE	114	26	4	85	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	3	83	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	11	2	0.89	0.98	0.026	0.7185	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.89	0.98	0.7445	FALSE	344	826	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	RP11-123O10.4--GRIP1	22	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1904	0.0519	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAL54_KIDNEY	1	1	0.2423	FALSE	416	2512	207	587	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TN	3	79	MT-TA	1051	chrM:5605:-	MT-TN	4062	chrM:5737:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.026	0.6839	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL54_KIDNEY	1	1	0.7099	FALSE	369	2501	205	193	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TC--MT-TY	22	2	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1904	0.0173	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	CAL54_KIDNEY	1	1	0.2077	FALSE	51	280	19	36	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND5--MT-ATP8	22	1	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3577	24	0.01	0.49	0.1904	0.0087	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0.01	0.49	0.1991	FALSE	43	37	8	105	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	8	53	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	392	0	0.13	1	0.0693	0.4588	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.13	1	0.5281	FALSE	344	827	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND5--MT-ATP8	21	1	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4357	65	0.01	0.25	0.1818	0.0087	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0.01	0.25	0.1905	FALSE	43	37	8	105	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND5--MT-ATP8	20	2	MT-ND5	2617	chrM:13953:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	NO	2290	489	0.01	0.04	0.1731	0.0173	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0.01	0.04	0.1904	FALSE	43	37	8	105	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	16	17	MT-ND1	1297	chrM:3603:+	MT-RNR2	5502	chrM:2216:+	INCL_NON_REF_SPLICE	YES	18	10913	0.65	0	0.1385	0.1472	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0	0.65	0.2857	FALSE	120	26	5	87	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	7	53	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	28	0	0.68	1	0.0606	0.4588	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.68	1	0.5194	FALSE	344	826	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	NRIP1--AF127936.7	19	5	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.92	1	0.1645	0.0433	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL54_KIDNEY	0.92	1	0.2078	FALSE	292	1546	117	613	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND3--MT-ATP8	20	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1731	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	1	1	0.1731	FALSE	351	233	23	137	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	19	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	10280	22	0	0.49	0.1645	0.0173	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.49	0.1818	FALSE	230	193	14	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	10	38	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	19	0	0.72	1	0.0866	0.3289	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.72	1	0.4155	FALSE	344	826	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	6	53	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	30	0	0.66	1	0.0519	0.4588	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.66	1	0.5107	FALSE	344	826	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TN	4	61	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0.528	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL54_KIDNEY	1	1	0.5626	FALSE	369	2501	205	193	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TN	7	48	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0.4155	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL54_KIDNEY	1	1	0.4761	FALSE	369	2501	205	193	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	5	54	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	7150	0	0.01	1	0.0433	0.4675	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.01	1	0.5108	FALSE	344	827	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	9	38	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	460	0	0.09	1	0.0779	0.3289	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.09	1	0.4068	FALSE	344	827	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	17	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10096	25	0	0.43	0.1472	0.0173	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.43	0.1645	FALSE	230	198	14	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	4	54	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	3857	0	0.01	1	0.0346	0.4675	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.01	1	0.5021	FALSE	344	827	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	8	38	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	240	0	0.16	1	0.0693	0.3289	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.16	1	0.3982	FALSE	344	827	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	HSP90AB1--MT-RNR2	17	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1627	0	0.01	1	0.1472	0.0087	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0.01	1	0.1559	FALSE	13	9	0	364	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TC	17	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1472	0.0087	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL54_KIDNEY	1	1	0.1559	FALSE	462	80	0	856	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	3	56	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	1	1	0.98	0.98	0.026	0.4848	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.98	0.98	0.5108	FALSE	344	821	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND6--MT-TE	11	23	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0952	0.1991	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL54_KIDNEY	1	1	0.2943	FALSE	499	1288	110	792	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	7	38	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	28	0	0.62	1	0.0606	0.3289	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.62	1	0.3895	FALSE	344	826	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TC	10	26	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0866	0.2251	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL54_KIDNEY	1	1	0.3117	FALSE	462	80	0	856	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	7	33	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	32	0	0.56	1	0.0606	0.2857	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.56	1	0.3463	FALSE	344	826	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TN	5	41	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0.3549	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL54_KIDNEY	1	1	0.3982	FALSE	369	2501	205	193	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TC--MT-TY	3	48	MT-TC	1061	chrM:5766:-	MT-TY	4075	chrM:5883:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0.4155	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	CAL54_KIDNEY	1	1	0.4415	FALSE	51	280	19	36	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	6	33	MT-ND1	1485	chrM:3791:+	MT-RNR2	4979	chrM:1693:+	INCL_NON_REF_SPLICE	YES	83	0	0.32	1	0.0519	0.2857	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0.32	1	0.3376	FALSE	114	26	4	85	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	12	9	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11576	66	0	0.24	0.1039	0.0779	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.24	0.1818	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	5	35	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	4	1	0.91	0.98	0.0433	0.303	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.91	0.98	0.3463	FALSE	344	821	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	8	21	MT-ND1	1227	chrM:3533:+	MT-RNR2	5001	chrM:1715:+	INCL_NON_REF_SPLICE	YES	17	0	0.63	1	0.0693	0.1818	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0.63	1	0.2511	FALSE	114	26	4	85	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TN	13	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1125	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL54_KIDNEY	1	1	0.1125	FALSE	369	2501	205	193	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	3	38	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	27	0	0.6	1	0.026	0.3289	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.6	1	0.3549	FALSE	344	826	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	3	38	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	27	0	0.6	1	0.026	0.3289	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.6	1	0.3549	FALSE	344	827	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1039	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CAL54_KIDNEY	1	1	0.1039	TRUE	0	0	0	434	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	4	31	MT-ND1	1272	chrM:3578:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	YES	19	0	0.65	1	0.0346	0.2684	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0.65	1	0.303	FALSE	114	26	4	85	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	11	3	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	8199	0	0	1	0.0952	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.1212	FALSE	230	193	14	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND5--MT-ATP8	9	10	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0779	0.0866	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	1	1	0.1645	FALSE	43	37	8	105	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND6--MT-TE	4	30	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0346	0.2597	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL54_KIDNEY	0.92	1	0.2943	FALSE	499	1288	110	792	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND6--MT-TE	4	30	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0346	0.2597	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL54_KIDNEY	0.92	1	0.2943	FALSE	499	1288	110	792	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	8	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11922	66	0	0.23	0.0693	0.1039	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.23	0.1732	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	7	16	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	12963	0	0	1	0.0606	0.1385	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.1991	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	10	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	11576	1859	0	0.01	0.0866	0.0346	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.01	0.1212	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	10	4	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	10301	0	0	1	0.0866	0.0346	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.1212	FALSE	231	204	14	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	10	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.93	0.0866	0.0346	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.93	1	0.1212	FALSE	344	821	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TN	11	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0952	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL54_KIDNEY	1	1	0.0952	FALSE	369	2501	205	193	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	7	15	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	12090	0	0	1	0.0606	0.1298	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.1904	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	10	2	MT-ND4	1152	chrM:10911:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	8230	17	0	0.41	0.0866	0.0173	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.41	0.1039	FALSE	230	193	14	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	5	21	MT-ND1	1246	chrM:3552:+	MT-RNR2	5019	chrM:1733:+	INCL_NON_REF_SPLICE	YES	19	0	0.58	1	0.0433	0.1818	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0.58	1	0.2251	FALSE	114	26	4	85	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	7	13	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4625	66	0	0.23	0.0606	0.1125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.23	0.1731	FALSE	218	210	16	281	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	5	21	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	11774	0	0	1	0.0433	0.1818	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.2251	FALSE	231	215	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	7	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	11922	190	0	0.09	0.0606	0.1039	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.09	0.1645	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	4	24	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	11	0	0.72	1	0.0346	0.2078	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.72	1	0.2424	FALSE	344	826	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TN	10	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0866	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL54_KIDNEY	1	1	0.0866	FALSE	369	2501	205	193	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TC--MT-TY	10	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0866	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	CAL54_KIDNEY	1	1	0.0866	FALSE	51	280	19	36	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	5	19	MT-ND4	2195	chrM:11954:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	5990	7	0	0.77	0.0433	0.1645	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.77	0.2078	FALSE	231	215	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	6	15	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	28	0	0.43	1	0.0519	0.1298	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.43	1	0.1817	FALSE	344	827	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	4	22	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	5064	0	0.01	1	0.0346	0.1904	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0.01	1	0.225	FALSE	222	212	16	282	0	FALSE	ACH-000457
CAL54_KIDNEY	RP11-96H19.1--RP11-446N19.1	7	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0606	0.0779	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL54_KIDNEY	0.94	1	0.1385	FALSE	515	4851	409	746	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	7	8	MT-ND1	1027	chrM:3333:+	MT-RNR2	6484	chrM:3198:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0606	0.0693	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0.94	1	0.1299	FALSE	92	21	4	61	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	24	MT-ND4	2320	chrM:12079:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.026	0.2078	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0.93	1	0.2338	FALSE	209	205	15	279	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	23	MT-ND4	2231	chrM:11990:+	MT-ATP8	5416	chrM:8403:+	INCL_NON_REF_SPLICE	YES	3719	0	0.01	1	0.026	0.1991	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0.01	1	0.2251	FALSE	216	209	16	281	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	23	MT-ND4	2343	chrM:12102:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0.1991	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	1	1	0.2251	FALSE	209	205	15	279	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	5	14	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	18	10592	0.51	0	0.0433	0.1212	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0	0.51	0.1645	FALSE	120	26	5	87	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	8	2	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10182	25	0	0.29	0.0693	0.0173	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.29	0.0866	FALSE	230	193	14	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	7	6	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	11933	1446	0	0.01	0.0606	0.0519	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.01	0.1125	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	21	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1208	0	0.02	1	0.026	0.1818	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0.02	1	0.2078	FALSE	216	209	16	281	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	4	17	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	12622	0	0	1	0.0346	0.1472	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.1818	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	6	9	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	13065	0	0	1	0.0519	0.0779	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.1298	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	6	9	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13050	0	0	1	0.0519	0.0779	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.1298	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	6	9	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	13018	0	0	1	0.0519	0.0779	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.1298	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	6	9	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12041	25	0	0.38	0.0519	0.0779	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.38	0.1298	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	5	13	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	11504	0	0	1	0.0433	0.1125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.1558	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	6	9	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	13097	0	0	1	0.0519	0.0779	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.1298	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TC	4	16	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0.1385	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL54_KIDNEY	1	1	0.1731	FALSE	462	80	0	856	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	4	15	MT-ND1	1462	chrM:3768:+	MT-RNR2	5687	chrM:2401:+	INCL_NON_REF_SPLICE	YES	61	12714	0.24	0	0.0346	0.1298	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0	0.24	0.1644	FALSE	120	26	5	87	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	6	7	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	15000	736	0	0.02	0.0519	0.0606	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.02	0.1125	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	4	14	MT-ND1	1227	chrM:3533:+	MT-RNR2	5558	chrM:2272:+	INCL_NON_REF_SPLICE	YES	17	10796	0.51	0	0.0346	0.1212	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0	0.51	0.1558	FALSE	120	26	5	87	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	3	18	MT-ND1	1450	chrM:3756:+	MT-RNR2	5497	chrM:2211:+	INCL_NON_REF_SPLICE	YES	51	10460	0.29	0	0.026	0.1558	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0	0.29	0.1818	FALSE	120	26	5	87	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-CO2--MT-ND1	6	5	MT-CO2	1356	chrM:7941:+	MT-ND1	4700	chrM:3322:+	INCL_NON_REF_SPLICE	YES	15041	0	0	1	0.0519	0.0433	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CAL54_KIDNEY	0	1	0.0952	FALSE	12	14	1	5	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-CO2--MT-ND1	6	5	MT-CO2	1350	chrM:7935:+	MT-ND1	4700	chrM:3322:+	INCL_NON_REF_SPLICE	YES	15177	0	0	1	0.0519	0.0433	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CAL54_KIDNEY	0	1	0.0952	FALSE	12	14	1	5	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	3	17	MT-ND1	1465	chrM:3771:+	MT-RNR2	5529	chrM:2243:+	INCL_NON_REF_SPLICE	YES	62	10612	0.24	0	0.026	0.1472	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0	0.24	0.1732	FALSE	120	26	5	87	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	3	17	MT-ND1	1454	chrM:3760:+	MT-RNR2	5501	chrM:2215:+	INCL_NON_REF_SPLICE	YES	53	10836	0.27	0	0.026	0.1472	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0	0.27	0.1732	FALSE	120	26	5	87	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	3	17	MT-ND1	1483	chrM:3789:+	MT-RNR2	5548	chrM:2262:+	INCL_NON_REF_SPLICE	YES	81	10715	0.2	0	0.026	0.1472	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0	0.2	0.1732	FALSE	120	26	5	87	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	4	13	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11609	66	0	0.2	0.0346	0.1125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.2	0.1471	FALSE	231	215	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	5	9	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	NO	12497	433	0	0.03	0.0433	0.0779	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.03	0.1212	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	17	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	12679	0	0	1	0.026	0.1472	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.1732	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	NRIP1--AF127936.7	5	9	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	31	0	0.31	1	0.0433	0.0779	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL54_KIDNEY	0.31	1	0.1212	FALSE	164	806	69	479	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TC	4	12	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0.1039	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL54_KIDNEY	1	1	0.1385	FALSE	462	80	0	856	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TN	7	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL54_KIDNEY	1	1	0.0606	FALSE	369	2501	205	193	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	15	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	11840	0	0	1	0.026	0.1298	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.1558	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	6	3	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	13950	491	0	0.02	0.0519	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.02	0.0779	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	15	MT-ND4	1776	chrM:11535:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	NO	12109	0	0	1	0.026	0.1298	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.1558	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	3	15	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	28	0	0.39	1	0.026	0.1298	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.39	1	0.1558	FALSE	344	827	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	3	15	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	33	0	0.35	1	0.026	0.1298	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.35	1	0.1558	FALSE	344	826	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TA--MT-TC	3	15	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0.1298	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL54_KIDNEY	1	1	0.1558	FALSE	462	80	0	856	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	3	14	MT-ND1	1180	chrM:3486:+	MT-RNR2	5462	chrM:2176:+	INCL_NON_REF_SPLICE	YES	18	10350	0.49	0	0.026	0.1212	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0	0.49	0.1472	FALSE	119	26	5	86	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	6	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10280	66	0	0.11	0.0519	0.0173	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.11	0.0692	FALSE	230	198	14	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	6	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11563	25	0	0.24	0.0519	0.0173	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.24	0.0692	FALSE	231	205	14	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-CO2--MT-ND1	6	1	MT-CO2	1224	chrM:7809:+	MT-ND1	4885	chrM:3507:+	INCL_NON_REF_SPLICE	NO	13207	7064	0	0	0.0519	0.0087	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CAL54_KIDNEY	0	0	0.0606	FALSE	12	14	1	5	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	13	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11586	0	0	1	0.026	0.1125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.1385	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	ANXA4--NUMB	2	16	ANXA4	7567	chr2:70015273:+	NUMB	44371	chr14:73759533:-	ONLY_REF_SPLICE	YES	2264	81	0.01	0.18	0.0173	0.1385	{Klijn_CCL:Kidney=1},ANXA4->annexin_A4,chr2:69871557-70053596:+,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	CAL54_KIDNEY	0.01	0.18	0.1558	TRUE	0	0	0	1	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	4	8	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	13596	0	0	1	0.0346	0.0693	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.1039	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	4	8	MT-ND4	1386	chrM:11145:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	13950	0	0	1	0.0346	0.0693	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.1039	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND6--MT-TE	4	8	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.0346	0.0693	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL54_KIDNEY	0.86	1	0.1039	FALSE	499	1288	110	792	0	FALSE	ACH-000457
CAL54_KIDNEY	RP11-123O10.4--GRIP1	5	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0433	0.0346	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAL54_KIDNEY	1	1	0.0779	FALSE	93	270	15	244	0	FALSE	ACH-000457
CAL54_KIDNEY	SMKR1--ADAP1	6	0	SMKR1	1349	chr7:129142668:+	ADAP1	9103	chr7:975141:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0519	0	SMKR1->chr7:129142320-129152773:+,small_lysine-rich_protein_1,ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-	CAL54_KIDNEY	1	1	0.0519	TRUE	0	0	0	1	0	TRUE	ACH-000457
CAL54_KIDNEY	MSH5--PRRC2A	2	15	MSH5	5782	chr6:31713096:+	PRRC2A	38193	chr6:31604510:+	ONLY_REF_SPLICE	YES	30	116	0.36	0.13	0.0173	0.1298	MSH5->chr6:31707725-31732622:+,mutS_homolog_5,PRRC2A->chr6:31588497-31605548:+,proline_rich_coiled-coil_2A	CAL54_KIDNEY	0.13	0.36	0.1471	TRUE	0	0	0	1	0	TRUE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	11	MT-ND4	1523	chrM:11282:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	14988	7	0	0.67	0.026	0.0952	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.67	0.1212	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	9	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	13403	0	0	1	0.026	0.0779	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.1039	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND1--MT-RNR2	3	8	MT-ND1	1066	chrM:3372:+	MT-RNR2	6499	chrM:3213:+	INCL_NON_REF_SPLICE	NO	4	0	0.73	1	0.026	0.0693	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	0.73	1	0.0953	FALSE	92	21	4	61	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	4	4	MT-ND4	1164	chrM:10923:+	MT-ATP8	5389	chrM:8376:+	INCL_NON_REF_SPLICE	YES	8409	0	0	1	0.0346	0.0346	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.0692	FALSE	230	193	14	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	8	MT-ND4	1645	chrM:11404:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13458	66	0	0.14	0.026	0.0693	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.14	0.0953	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	4	4	MT-ND4	1572	chrM:11331:+	MT-ATP8	5534	chrM:8521:+	INCL_NON_REF_SPLICE	YES	14068	1847	0	0	0.0346	0.0346	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0	0.0692	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL54_KIDNEY	1	1	0.0433	FALSE	499	1288	110	792	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL54_KIDNEY	1	1	0.0433	FALSE	499	1288	110	792	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	YES	12041	845	0	0.01	0.026	0.0606	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.01	0.0866	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	7	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	12558	776	0	0.01	0.026	0.0606	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.01	0.0866	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND5--MT-ATP8	4	3	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	2659	9	0	0.44	0.0346	0.026	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.44	0.0606	FALSE	43	37	8	105	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-CO2--MT-ND1	4	2	MT-CO2	1461	chrM:8046:+	MT-ND1	4895	chrM:3517:+	INCL_NON_REF_SPLICE	YES	10141	7119	0	0	0.0346	0.0173	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CAL54_KIDNEY	0	0	0.0519	FALSE	12	14	1	5	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	4	2	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	13205	1446	0	0	0.0346	0.0173	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0	0.0519	FALSE	231	205	14	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	6	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	12549	0	0	1	0.026	0.0519	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.0779	FALSE	231	205	14	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND5--MT-ATP8	4	2	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4	489	0.6	0.01	0.0346	0.0173	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0.01	0.6	0.0519	FALSE	43	37	8	105	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-CO2--MT-ND1	3	5	MT-CO2	1396	chrM:7981:+	MT-ND1	4700	chrM:3322:+	INCL_NON_REF_SPLICE	YES	13722	0	0	1	0.026	0.0433	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CAL54_KIDNEY	0	1	0.0693	FALSE	12	14	1	5	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND3--MT-ATP8	4	0	MT-ND3	1094	chrM:10152:+	MT-ATP8	4474	chrM:8493:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	1	1	0.0346	FALSE	351	233	23	137	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND5--MT-ATP8	4	0	MT-ND5	1701	chrM:13037:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	1	1	0.0346	FALSE	42	36	7	104	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND5--MT-ATP8	3	4	MT-ND5	2511	chrM:13847:+	MT-ATP8	5885	chrM:8438:+	INCL_NON_REF_SPLICE	YES	3074	0	0	1	0.026	0.0346	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.0606	FALSE	43	37	8	105	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL54_KIDNEY	1	1	0.0346	FALSE	499	1288	110	792	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TC--MT-TY	4	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	CAL54_KIDNEY	1	1	0.0346	FALSE	51	280	19	36	0	FALSE	ACH-000457
CAL54_KIDNEY	SPATA20--MT-CO3	4	0	SPATA20	9518	chr17:48631776:+	MT-CO3	14014	chrM:9265:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	SPATA20->chr17:48620419-48633213:+,spermatogenesis_associated_20,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAL54_KIDNEY	1	1	0.0346	FALSE	0	0	0	2	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	3	MT-ND4	1447	chrM:11206:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13508	25	0	0.19	0.026	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.19	0.052	FALSE	231	217	16	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-CO2--MT-ND1	3	2	MT-CO2	1220	chrM:7805:+	MT-ND1	4707	chrM:3329:+	INCL_NON_REF_SPLICE	NO	12831	0	0	1	0.026	0.0173	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CAL54_KIDNEY	0	1	0.0433	FALSE	12	14	1	5	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10280	25	0	0.17	0.026	0.0173	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.17	0.0433	FALSE	230	193	14	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	2	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	10706	1906	0	0	0.026	0.0173	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0	0.0433	FALSE	231	204	14	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	3	2	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	5	0	0.5	1	0.026	0.0173	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.5	1	0.0433	FALSE	344	821	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND5--MT-ATP8	3	2	MT-ND5	2167	chrM:13503:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	3741	0	0	1	0.026	0.0173	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.0433	FALSE	43	37	8	105	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND5--MT-ATP8	3	2	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	2787	0	0	1	0.026	0.0173	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.0433	FALSE	43	37	8	105	0	FALSE	ACH-000457
CAL54_KIDNEY	NRIP1--AF127936.7	2	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.32	1	0.0173	0.0519	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL54_KIDNEY	0.32	1	0.0692	FALSE	125	705	46	456	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-CO2--MT-ND1	3	1	MT-CO2	1284	chrM:7869:+	MT-ND1	4882	chrM:3504:+	INCL_NON_REF_SPLICE	YES	15461	6863	0	0	0.026	0.0087	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CAL54_KIDNEY	0	0	0.0347	FALSE	12	14	1	5	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-CO2--MT-ND1	3	1	MT-CO2	1301	chrM:7886:+	MT-ND1	5003	chrM:3625:+	INCL_NON_REF_SPLICE	YES	14991	9155	0	0	0.026	0.0087	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CAL54_KIDNEY	0	0	0.0347	FALSE	12	14	1	5	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	1	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	2422	14	0	0.22	0.026	0.0087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.22	0.0347	FALSE	230	191	14	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ATP8	3	1	MT-ND4	1003	chrM:10762:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	29	0	0.12	1	0.026	0.0087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0.12	1	0.0347	FALSE	230	189	14	283	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	3	1	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	2	2	0.67	0.67	0.026	0.0087	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	0.67	0.67	0.0347	FALSE	344	821	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND5--MT-ATP8	3	1	MT-ND5	1628	chrM:12964:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	4526	0	0	1	0.026	0.0087	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	1	0.0347	FALSE	42	36	7	104	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND5--MT-ATP8	3	1	MT-ND5	2004	chrM:13340:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4130	489	0	0.01	0.026	0.0087	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	0	0.01	0.0347	FALSE	43	37	8	105	0	FALSE	ACH-000457
CAL54_KIDNEY	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0087	0.0779	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL54_KIDNEY	1	1	0.0866	FALSE	467	2173	244	435	0	FALSE	ACH-000457
CAL54_KIDNEY	HSP90AB1--MT-RNR2	3	0	HSP90AB1	4399	chr6:44218222:+	MT-RNR2	11352	chrM:2225:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL54_KIDNEY	1	1	0.026	FALSE	0	0	0	11	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-CO2--MT-ND1	3	0	MT-CO2	1298	chrM:7883:+	MT-ND1	5225	chrM:3847:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CAL54_KIDNEY	1	1	0.026	FALSE	12	14	1	5	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL54_KIDNEY	1	1	0.026	FALSE	344	821	44	306	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND5--MT-ATP8	3	0	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL54_KIDNEY	1	1	0.026	FALSE	41	30	6	102	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL54_KIDNEY	1	1	0.026	FALSE	499	1288	110	792	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL54_KIDNEY	1	1	0.026	FALSE	499	1288	110	792	0	FALSE	ACH-000457
CAL54_KIDNEY	MT-TC--MT-TY	3	0	MT-TC	1107	chrM:5720:-	MT-TY	4130	chrM:5828:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	CAL54_KIDNEY	1	1	0.026	FALSE	51	280	19	36	0	FALSE	ACH-000457
CAL54_KIDNEY	PLXDC1--TAF13	3	0	PLXDC1	27520	chr17:37222840:-	TAF13	38540	chr1:109605627:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	CAL54_KIDNEY	1	1	0.026	TRUE	7	10	0	216	0	FALSE	ACH-000457
CAL54_KIDNEY	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CAL54_KIDNEY	1	1	0.026	TRUE	22	156	2	142	0	FALSE	ACH-000457
CAL54_KIDNEY	ANXA4--NUMB	1	4	ANXA4	5066	chr2:69969307:+	NUMB	43247	chr14:73763993:-	ONLY_REF_SPLICE	YES	187	57	0.03	0.08	0.0087	0.0346	{Klijn_CCL:Kidney=1},ANXA4->annexin_A4,chr2:69871557-70053596:+,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	CAL54_KIDNEY	0.03	0.08	0.0433	TRUE	0	0	0	1	0	FALSE	ACH-000457
CAL54_KIDNEY	MSH5--PRRC2A	1	3	MSH5	5044	chr6:31712358:+	PRRC2A	38502	chr6:31604819:+	ONLY_REF_SPLICE	YES	25	141	0.14	0.03	0.0087	0.026	MSH5->chr6:31707725-31732622:+,mutS_homolog_5,PRRC2A->chr6:31588497-31605548:+,proline_rich_coiled-coil_2A	CAL54_KIDNEY	0.03	0.14	0.0347	TRUE	0	0	0	1	0	FALSE	ACH-000457
CAL54_KIDNEY	ANXA4--NUMB	1	1	ANXA4	5066	chr2:69969307:+	NUMB	45463	chr14:73754022:-	ONLY_REF_SPLICE	NO	187	94	0.01	0.02	0.0087	0.0087	{Klijn_CCL:Kidney=1},ANXA4->annexin_A4,chr2:69871557-70053596:+,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	CAL54_KIDNEY	0.01	0.02	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000457
SW1783_CENTRAL_NERVOUS_SYSTEM	AARS2--PKP3	270	122	AARS2	4028	chr6:44278036:-	PKP3	24021	chr11:403078:+	ONLY_REF_SPLICE	YES	17	2	0.96	0.99	3.3469	1.5123	AARS2->alanyl-tRNA_synthetase_2,_mitochondrial,chr6:44267391-44281063:-,PKP3->chr11:392614-404908:+,plakophilin_3	SW1783_CENTRAL_NERVOUS_SYSTEM	0.96	0.99	4.8592	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	94	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1652	0.3347	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	1.4999	TRUE	508	994	45	981	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	CD63--TGFBI	67	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8305	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.8305	TRUE	0	0	0	14	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	51	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	263	6	0.17	0.9	0.6322	0.0248	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SW1783_CENTRAL_NERVOUS_SYSTEM	0.17	0.9	0.657	TRUE	519	3926	326	965	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	35	15	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	133	1	0.27	0.98	0.4339	0.1859	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SW1783_CENTRAL_NERVOUS_SYSTEM	0.27	0.98	0.6198	FALSE	56	216	12	147	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	23	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2851	0.124	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.4091	TRUE	458	1351	185	561	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	19	23	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	37	1	0.53	0.98	0.2355	0.2851	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SW1783_CENTRAL_NERVOUS_SYSTEM	0.53	0.98	0.5206	FALSE	21	45	1	60	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	22	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2727	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.2727	TRUE	402	216	10	229	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	19	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2355	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.2355	TRUE	347	1186	183	220	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	EVC2--EDNRA	16	7	EVC2	10279	chr4:5667242:-	EDNRA	33512	chr4:148406764:+	ONLY_REF_SPLICE	YES	2	1	0.92	0.96	0.1983	0.0868	EVC2->EvC_ciliary_complex_subunit_2,chr4:5544499-5711275:-,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	SW1783_CENTRAL_NERVOUS_SYSTEM	0.92	0.96	0.2851	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	15	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1859	0.0248	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.2107	FALSE	499	1288	110	792	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	IGFBP7--MT-ND4L	15	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1859	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.1859	FALSE	1	0	0	30	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	10	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	50	24	0.29	0.45	0.124	0.124	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SW1783_CENTRAL_NERVOUS_SYSTEM	0.29	0.45	0.248	TRUE	267	562	48	632	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL6A2	11	1	COL1A1	5797	chr17:48273978:-	COL6A2	36137	chr21:47544799:+	ONLY_REF_SPLICE	NO	4514	1977	0	0.01	0.1364	0.0124	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	SW1783_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.1488	TRUE	0	0	0	6	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	9	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	22	1	0.42	0.1116	0.0868	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW1783_CENTRAL_NERVOUS_SYSTEM	0.42	1	0.1984	TRUE	465	1949	224	605	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	CHIC2--KIT	9	6	CHIC2	4267	chr4:54880004:-	KIT	9789	chr4:55561678:+	ONLY_REF_SPLICE	YES	489	38	0.03	0.28	0.1116	0.0744	CHIC2->Oncogene{Bushman},chr4:54875956-54930857:-,cysteine_rich_hydrophobic_domain_2,KIT->ArcherDX_panel,FoundationOne_panel,KIT_proto-oncogene_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:55524085-55606881:+	SW1783_CENTRAL_NERVOUS_SYSTEM	0.03	0.28	0.186	TRUE	0	0	0	1	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	5	22	PRR16	8644	chr5:120022405:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	56	1	0.33	0.96	0.062	0.2727	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SW1783_CENTRAL_NERVOUS_SYSTEM	0.33	0.96	0.3347	FALSE	21	45	1	60	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	8	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	49	25	0.25	0.39	0.0992	0.0992	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SW1783_CENTRAL_NERVOUS_SYSTEM	0.25	0.39	0.1984	TRUE	267	562	48	632	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	9	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1116	0.0124	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.124	TRUE	477	1352	189	275	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	8	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.0992	0.0496	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW1783_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.1488	FALSE	292	1546	117	613	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	8	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0992	0.0248	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.124	TRUE	254	575	65	124	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	6	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0744	0.0744	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.1488	FALSE	499	1288	110	792	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	7	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0868	0.0248	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.1116	FALSE	499	1288	110	792	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	6	5	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	298	400	0.04	0.03	0.0744	0.062	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SW1783_CENTRAL_NERVOUS_SYSTEM	0.03	0.04	0.1364	FALSE	76	19	3	26	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	7	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0868	0.0124	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.0992	TRUE	6	15	3	35	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0.1364	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.186	FALSE	499	1288	110	792	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	RP11-403B2.7--RP11-403B2.6	4	10	RP11-403B2.7	1254	chr15:20961259:-	RP11-403B2.6	7754	chr15:20965236:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0496	0.124	GTEx_FI:{Brain=[count:17=pct:2.6],Esophagus=[count:15=pct:3.7],Blood_Vessel=[count:8=pct:2.2],Skin=[count:7=pct:2.2],Thyroid=[count:5=pct:2.8],Prostate=[count:4=pct:6.6],Lung=[count:4=pct:2.4],Heart=[count:3=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Blood=[count:2=pct:1.1],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},LOCAL_REARRANGEMENT:-:[3128],RP11-403B2.7->chr15:20935076-20961512:-,RP11-403B2.6->chr15:20964640-20980123:-	SW1783_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.1736	TRUE	22	66	5	11	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	5	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	81	0.83	0.11	0.062	0.062	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SW1783_CENTRAL_NERVOUS_SYSTEM	0.11	0.83	0.124	FALSE	16	356	14	466	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	5	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	1	0.73	0.89	0.062	0.0372	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW1783_CENTRAL_NERVOUS_SYSTEM	0.73	0.89	0.0992	FALSE	515	4851	409	746	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	5	1	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.062	0.0124	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.0744	TRUE	4	2	0	28	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	3	MT-ND6	1034	chrM:14640:-	MT-TE	4533	chrM:14735:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0.0372	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.0868	FALSE	499	1288	110	792	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	1	15	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	133	0	0.11	1	0.0124	0.1859	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SW1783_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.1983	FALSE	1	13	0	24	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	COL1A1--NPM1	4	2	COL1A1	13177	chr17:48266598:-	NPM1	22902	chr5:170814896:+	INCL_NON_REF_SPLICE	YES	4812	4	0	0.6	0.0496	0.0248	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	SW1783_CENTRAL_NERVOUS_SYSTEM	0	0.6	0.0744	FALSE	0	0	0	31	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	KDM4C--EQTN	4	2	KDM4C	12172	chr9:6893232:+	EQTN	44341	chr9:27296736:-	ONLY_REF_SPLICE	YES	17	0	0.26	1	0.0496	0.0248	KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,EQTN->chr9:27284656-27297137:-,equatorin	SW1783_CENTRAL_NERVOUS_SYSTEM	0.26	1	0.0744	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	RPSAP52--HMGA2	4	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	1	33	0.86	0.15	0.0496	0.0248	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SW1783_CENTRAL_NERVOUS_SYSTEM	0.15	0.86	0.0744	FALSE	0	59	0	125	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL6A2	4	1	COL1A1	9774	chr17:48270001:-	COL6A2	29401	chr21:47537350:+	INCL_NON_REF_SPLICE	NO	4281	1594	0	0	0.0496	0.0124	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	SW1783_CENTRAL_NERVOUS_SYSTEM	0	0	0.062	FALSE	0	0	0	6	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	COA1--STK17A	4	0	COA1	1289	chr7:43769028:-	STK17A	27976	chr7:43635500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0496	0	NEIGHBORS_OVERLAP:-:+:[18330],COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,STK17A->chr7:43622357-43666385:+,serine/threonine_kinase_17a	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.0496	FALSE	0	3	1	13	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.0496	TRUE	22	156	2	142	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	COL1A1--NPM1	3	3	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	4056	1	0	0.86	0.0372	0.0372	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	SW1783_CENTRAL_NERVOUS_SYSTEM	0	0.86	0.0744	FALSE	0	0	0	31	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	SUPT3H--TCTE1	2	6	SUPT3H	2744	chr6:45332938:-	TCTE1	23206	chr6:44255655:-	ONLY_REF_SPLICE	YES	10	0	0.44	1	0.0248	0.0744	SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,TCTE1->chr6:44246480-44265458:-,t-complex-associated-testis-expressed_1	SW1783_CENTRAL_NERVOUS_SYSTEM	0.44	1	0.0992	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL6A2	3	1	COL1A1	5797	chr17:48273978:-	COL6A2	32480	chr21:47540429:+	ONLY_REF_SPLICE	YES	4514	1613	0	0	0.0372	0.0124	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	SW1783_CENTRAL_NERVOUS_SYSTEM	0	0	0.0496	FALSE	0	0	0	2	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	EVC2--EDNRA	3	1	EVC2	10279	chr4:5667242:-	EDNRA	35002	chr4:148441003:+	ONLY_REF_SPLICE	YES	2	5	0.67	0.44	0.0372	0.0124	EVC2->EvC_ciliary_complex_subunit_2,chr4:5544499-5711275:-,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	SW1783_CENTRAL_NERVOUS_SYSTEM	0.44	0.67	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.47	1	0.0248	0.062	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW1783_CENTRAL_NERVOUS_SYSTEM	0.47	1	0.0868	FALSE	125	705	46	456	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	EEF2--RPS28	3	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.0372	TRUE	0	0	0	100	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	SERPINE1--MT-ND4	3	0	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.0372	FALSE	1	0	0	29	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	KDR--KIAA1211	2	1	KDR	16183	chr4:55963829:-	KIAA1211	31928	chr4:57045450:+	ONLY_REF_SPLICE	YES	22	0	0.12	1	0.0248	0.0124	KDR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:55944644-55991756:-,kinase_insert_domain_receptor,KIAA1211->KIAA1211,chr4:57036361-57194791:+	SW1783_CENTRAL_NERVOUS_SYSTEM	0.12	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	NCOR2--UBC	2	1	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	2	54	0.6	0.05	0.0248	0.0124	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SW1783_CENTRAL_NERVOUS_SYSTEM	0.05	0.6	0.0372	TRUE	145	312	16	51	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	PPP1R12C--CNN2	2	1	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	118	419	0.02	0.01	0.0248	0.0124	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	SW1783_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0372	FALSE	35	34	3	30	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	2	0	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	7	0	19	1	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	CDK5RAP1--CIRBP	2	0	CDK5RAP1	1134	chr20:31989234:-	CIRBP	28831	chr19:1270927:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NUCLCLUST,CDK5RAP1->CDK5_regulatory_subunit_associated_protein_1,chr20:31946645-31989367:-,CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	COL5A2--RHOA	2	0	COL5A2	1372	chr2:190044234:-	RHOA	53878	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	COL5A2->chr2:189896622-190044605:-,collagen_type_V_alpha_2,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	PPP3CA--MELK	2	0	PPP3CA	13610	chr4:102001689:-	MELK	40521	chr9:36657238:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	PPP3CA->chr4:101944566-102269435:-,protein_phosphatase_3_catalytic_subunit_alpha,MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	TCF7--CTD-2410N18.5	2	0	TCF7	2323	chr5:133451724:+	CTD-2410N18.5	20410	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	LOCAL_INVERSION:+:-:[15305],TCF7->chr5:133450402-133487556:+,transcription_factor_7_(T-cell_specific,_HMG-box),CTD-2410N18.5->chr5:133502861-133561762:-	SW1783_CENTRAL_NERVOUS_SYSTEM	1	1	0.0248	TRUE	0	2	0	4	1	TRUE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	81	0.57	0.05	0.0124	0.0372	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SW1783_CENTRAL_NERVOUS_SYSTEM	0.05	0.57	0.0496	FALSE	0	48	1	163	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	1	2	COL8A1	12080	chr3:99463865:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	394	400	0.01	0.01	0.0124	0.0248	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SW1783_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0372	FALSE	4	4	0	17	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL6A2	1	1	COL1A1	9617	chr17:48270158:-	COL6A2	34461	chr21:47542410:+	ONLY_REF_SPLICE	NO	4420	1789	0	0	0.0124	0.0124	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	SW1783_CENTRAL_NERVOUS_SYSTEM	0	0	0.0248	FALSE	0	0	0	2	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	EIF2D--CHMP1A	1	1	EIF2D	12869	chr1:206769067:-	CHMP1A	26820	chr16:89713739:-	ONLY_REF_SPLICE	YES	72	226	0.03	0.01	0.0124	0.0124	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},EIF2D->chr1:206744620-206785904:-,eukaryotic_translation_initiation_factor_2D,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SW1783_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0248	FALSE	3	4	1	2	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	IMMP2L--TSR1	1	1	IMMP2L	4976	chr7:111127294:-	TSR1	26682	chr17:2232769:-	ONLY_REF_SPLICE	NO	41	184	0.05	0.01	0.0124	0.0124	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,TSR1->TSR1,_ribosome_maturation_factor,chr17:2225797-2240801:-	SW1783_CENTRAL_NERVOUS_SYSTEM	0.01	0.05	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	MAGT1--ATRX	1	1	MAGT1	3573	chrX:77126305:-	ATRX	57719	chrX:76764107:-	ONLY_REF_SPLICE	YES	387	92	0.01	0.02	0.0124	0.0124	NEIGHBORS[40159],MAGT1->chrX:77081861-77151090:-,magnesium_transporter_1,ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-	SW1783_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000883
SW1783_CENTRAL_NERVOUS_SYSTEM	SLC29A1--IFITM3	1	1	SLC29A1	10756	chr6:44200743:+	IFITM3	16757	chr11:320772:-	ONLY_REF_SPLICE	YES	139	179	0.01	0.01	0.0124	0.0124	SLC29A1->Oncogene{Bushman},chr6:44187242-44201888:+,solute_carrier_family_29_member_1_(Augustine_blood_group),IFITM3->chr11:319669-327537:-,interferon_induced_transmembrane_protein_3	SW1783_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000883
K029AX_SKIN	SNX8--MAD1L1	435	24	SNX8	3400	chr7:2353963:-	MAD1L1	61693	chr7:1855864:-	ONLY_REF_SPLICE	YES	7	190	0.98	0.71	6.5607	0.362	NEIGHBORS[18527],SNX8->chr7:2291405-2393953:-,sorting_nexin_8,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	K029AX_SKIN	0.71	0.98	6.9227	FALSE	0	0	0	6	0	FALSE	ACH-000404
K029AX_SKIN	TIMM23B--LINC00843	39	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5882	0.2111	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	K029AX_SKIN	1	1	0.7993	TRUE	508	994	45	981	0	FALSE	ACH-000404
K029AX_SKIN	MT-TA--MT-TC	40	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6033	0.0302	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	K029AX_SKIN	1	1	0.6335	FALSE	462	80	0	856	0	FALSE	ACH-000404
K029AX_SKIN	MT-ND6--MT-TE	29	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4374	0.0302	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	K029AX_SKIN	1	1	0.4676	FALSE	499	1288	110	792	0	FALSE	ACH-000404
K029AX_SKIN	TIMM23--RP11-464F9.1	20	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	121	3	0.15	0.88	0.3016	0.0151	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	K029AX_SKIN	0.15	0.88	0.3167	TRUE	519	3926	326	965	0	FALSE	ACH-000404
K029AX_SKIN	MT-ND6--MT-TE	14	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.2111	0.1659	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	K029AX_SKIN	0.93	1	0.377	FALSE	499	1288	110	792	0	FALSE	ACH-000404
K029AX_SKIN	C15orf57--CBX3	10	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	38	29	0.32	0.38	0.1508	0.1207	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	K029AX_SKIN	0.32	0.38	0.2715	TRUE	267	562	48	632	0	FALSE	ACH-000404
K029AX_SKIN	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.181	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	K029AX_SKIN	1	1	0.181	TRUE	46	1352	75	139	0	FALSE	ACH-000404
K029AX_SKIN	MT-ND6--MT-TE	10	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1508	0.0302	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	K029AX_SKIN	1	1	0.181	FALSE	499	1288	110	792	0	FALSE	ACH-000404
K029AX_SKIN	INO80C--LMTK3	6	5	INO80C	3271	chr18:33069296:-	LMTK3	22792	chr19:49004819:-	ONLY_REF_SPLICE	YES	33	0	0.25	1	0.0905	0.0754	INO80C->INO80_complex_subunit_C,chr18:33032194-33077955:-,LMTK3->chr19:48988528-49016446:-,lemur_tyrosine_kinase_3	K029AX_SKIN	0.25	1	0.1659	TRUE	0	0	0	1	0	TRUE	ACH-000404
K029AX_SKIN	ZNF670--RP11-439E19.8	7	1	ZNF670	1218	chr1:247241896:-	RP11-439E19.8	20857	chr1:246973335:-	ONLY_REF_SPLICE	YES	8	0	0.5	1	0.1056	0.0151	ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670,RP11-439E19.8->chr1:246935139-246993361:-	K029AX_SKIN	0.5	1	0.1207	TRUE	0	0	0	1	0	TRUE	ACH-000404
K029AX_SKIN	MT-ND6--MT-TE	3	15	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0452	0.2262	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	K029AX_SKIN	0.9	1	0.2714	FALSE	499	1288	110	792	0	FALSE	ACH-000404
K029AX_SKIN	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0905	0.0452	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	K029AX_SKIN	1	1	0.1357	FALSE	462	80	0	856	0	FALSE	ACH-000404
K029AX_SKIN	AC024084.1--AC009784.3	6	2	AC024084.1	3174	chr7:135743253:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0905	0.0302	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	K029AX_SKIN	0.89	1	0.1207	FALSE	2	5	0	14	0	FALSE	ACH-000404
K029AX_SKIN	RP11-680G10.1--GSE1	6	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0905	0.0302	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	K029AX_SKIN	0.89	1	0.1207	TRUE	458	1351	185	561	0	FALSE	ACH-000404
K029AX_SKIN	FTH1--ACTG1	6	1	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	8996	0	0	1	0.0905	0.0151	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	K029AX_SKIN	0	1	0.1056	TRUE	0	0	0	64	0	FALSE	ACH-000404
K029AX_SKIN	MT-CO3--MT-ATP6	3	10	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	30	0.93	0.3	0.0452	0.1508	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	K029AX_SKIN	0.3	0.93	0.196	FALSE	189	492	56	216	0	FALSE	ACH-000404
K029AX_SKIN	C15orf57--CBX3	4	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	33	29	0.2	0.22	0.0603	0.0603	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	K029AX_SKIN	0.2	0.22	0.1206	TRUE	267	562	48	632	0	FALSE	ACH-000404
K029AX_SKIN	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0754	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	K029AX_SKIN	1	1	0.0754	FALSE	462	80	0	856	0	FALSE	ACH-000404
K029AX_SKIN	NRIP1--AF127936.7	4	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0603	0.0452	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	K029AX_SKIN	1	1	0.1055	FALSE	125	705	46	456	0	FALSE	ACH-000404
K029AX_SKIN	CHSY3--HSPA8P4	3	5	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	16	0	0.33	1	0.0452	0.0754	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	K029AX_SKIN	0.33	1	0.1206	FALSE	89	26	1	44	0	FALSE	ACH-000404
K029AX_SKIN	RP11-476K15.1--CTD-2015H3.2	4	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	1	1	0.83	0.83	0.0603	0.0151	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	K029AX_SKIN	0.83	0.83	0.0754	FALSE	0	46	0	73	0	FALSE	ACH-000404
K029AX_SKIN	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	17	1	0.23	0.0603	0.0151	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	K029AX_SKIN	0.23	1	0.0754	TRUE	465	1949	224	605	0	FALSE	ACH-000404
K029AX_SKIN	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0603	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	K029AX_SKIN	1	1	0.0603	FALSE	189	492	56	216	0	FALSE	ACH-000404
K029AX_SKIN	MT-ND6--MT-TE	3	4	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0452	0.0603	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	K029AX_SKIN	0.78	1	0.1055	FALSE	499	1288	110	792	0	FALSE	ACH-000404
K029AX_SKIN	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0603	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	K029AX_SKIN	1	1	0.0603	FALSE	499	1288	110	792	0	FALSE	ACH-000404
K029AX_SKIN	RP11-123O10.4--GRIP1	4	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0603	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	K029AX_SKIN	1	1	0.0603	FALSE	416	2512	207	587	0	FALSE	ACH-000404
K029AX_SKIN	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0.0452	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	K029AX_SKIN	1	1	0.0904	FALSE	462	80	0	856	0	FALSE	ACH-000404
K029AX_SKIN	AC024084.1--AC009784.3	3	2	AC024084.1	2134	chr7:135715781:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0452	0.0302	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	K029AX_SKIN	0.83	1	0.0754	FALSE	1	6	0	14	0	FALSE	ACH-000404
K029AX_SKIN	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0.0302	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	K029AX_SKIN	1	1	0.0754	FALSE	462	80	0	856	0	FALSE	ACH-000404
K029AX_SKIN	MT-TA--MT-TC	3	2	MT-TA	1063	chrM:5593:-	MT-TC	4102	chrM:5794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0.0302	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	K029AX_SKIN	1	1	0.0754	FALSE	462	80	0	856	0	FALSE	ACH-000404
K029AX_SKIN	FTH1--ACTG1	3	1	FTH1	1258	chr11:61734875:-	ACTG1	11019	chr17:79479357:-	INCL_NON_REF_SPLICE	YES	10588	56	0	0.07	0.0452	0.0151	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	K029AX_SKIN	0	0.07	0.0603	FALSE	0	0	0	64	0	FALSE	ACH-000404
K029AX_SKIN	FTH1--ACTG1	3	1	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	9168	0	0	1	0.0452	0.0151	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	K029AX_SKIN	0	1	0.0603	FALSE	0	0	0	64	0	FALSE	ACH-000404
K029AX_SKIN	MT-CO3--MT-ATP6	3	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.44	1	0.0452	0.0151	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	K029AX_SKIN	0.44	1	0.0603	FALSE	189	492	56	216	0	FALSE	ACH-000404
K029AX_SKIN	PCAT1--RP11-382A18.2	3	1	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0452	0.0151	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	K029AX_SKIN	0.67	1	0.0603	TRUE	4	84	1	46	0	FALSE	ACH-000404
K029AX_SKIN	ALDOA--GDF15	3	0	ALDOA	7448	chr16:30077220:+	GDF15	17821	chr19:18496990:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,GDF15->Oncogene{Bushman},chr19:18485541-18499986:+,growth_differentiation_factor_15	K029AX_SKIN	1	1	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000404
K029AX_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	K029AX_SKIN	1	1	0.0452	FALSE	499	1288	110	792	0	FALSE	ACH-000404
K029AX_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	K029AX_SKIN	1	1	0.0452	FALSE	499	1288	110	792	0	FALSE	ACH-000404
K029AX_SKIN	RP11-141M1.3--STARD13	2	4	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	1	0.75	0.86	0.0302	0.0603	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	K029AX_SKIN	0.75	0.86	0.0905	FALSE	141	264	50	91	0	FALSE	ACH-000404
K029AX_SKIN	NRIP1--AF127936.7	2	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0.0452	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	K029AX_SKIN	1	1	0.0754	FALSE	292	1546	117	613	0	FALSE	ACH-000404
K029AX_SKIN	RP1-34H18.1--NAV3	2	3	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0.0452	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	K029AX_SKIN	1	1	0.0754	TRUE	254	575	65	124	0	FALSE	ACH-000404
K029AX_SKIN	AC024084.1--AC009784.3	2	1	AC024084.1	3174	chr7:135743253:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	YES	0	7	1	0.3	0.0302	0.0151	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	K029AX_SKIN	0.3	1	0.0453	FALSE	0	2	0	6	0	FALSE	ACH-000404
K029AX_SKIN	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	K029AX_SKIN	1	1	0.0302	FALSE	25	145	6	90	0	FALSE	ACH-000404
K029AX_SKIN	SS18L1--PSMA7	2	0	SS18L1	1124	chr20:60718945:+	PSMA7	21021	chr20:60716000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_INVERSION:+:-:[326],SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	K029AX_SKIN	1	1	0.0302	TRUE	0	1	0	2	1	TRUE	ACH-000404
K029AX_SKIN	RP11-476K15.1--CTD-2015H3.2	1	2	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0151	0.0302	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	K029AX_SKIN	0.75	1	0.0453	FALSE	0	46	0	73	0	FALSE	ACH-000404
K029AX_SKIN	DEGS1--NVL	1	1	DEGS1	2440	chr1:224371120:+	NVL	33819	chr1:224438020:-	ONLY_REF_SPLICE	YES	298	32	0.01	0.06	0.0151	0.0151	GTEx_v2:{count=3;pct=0.03%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:+:-:[33893],DEGS1->chr1:224363458-224381143:+,delta(4)-desaturase,_sphingolipid_1,NVL->chr1:224415036-224518089:-,nuclear_VCP-like	K029AX_SKIN	0.01	0.06	0.0302	FALSE	1	1	0	3	1	FALSE	ACH-000404
K029AX_SKIN	PINX1--RP1L1	1	1	PINX1	6234	chr8:10683662:-	RP1L1	17312	chr8:10480730:-	ONLY_REF_SPLICE	NO	87	0	0.02	1	0.0151	0.0151	NEIGHBORS[52776],PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	K029AX_SKIN	0.02	1	0.0302	FALSE	1	8	0	15	0	FALSE	ACH-000404
K029AX_SKIN	UXS1--NCK2	1	1	UXS1	9552	chr2:106761646:-	NCK2	33489	chr2:106497784:+	ONLY_REF_SPLICE	YES	109	366	0.02	0.01	0.0151	0.0151	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},UXS1->UDP-glucuronate_decarboxylase_1,chr2:106709759-106810795:-,NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+	K029AX_SKIN	0.01	0.02	0.0302	FALSE	0	0	0	1	0	FALSE	ACH-000404
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	2053	4	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	4	2	1	1	25.2894	0.0493	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	1	1	25.3387	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	TIMM23B--LINC00843	97	60	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1949	0.7391	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	G401_SOFT_TISSUE	0.99	1	1.934	TRUE	508	994	45	981	0	FALSE	ACH-000096
G401_SOFT_TISSUE	RP11-494M8.4--OVCH2	72	48	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	13	0	0.9	1	0.8869	0.5913	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	G401_SOFT_TISSUE	0.9	1	1.4782	FALSE	32	0	0	22	0	FALSE	ACH-000096
G401_SOFT_TISSUE	OR51S1--TP53I11	74	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9116	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	G401_SOFT_TISSUE	1	1	0.9116	TRUE	402	216	10	229	0	FALSE	ACH-000096
G401_SOFT_TISSUE	TIMM23--RP11-464F9.1	52	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	714	12	0.07	0.82	0.6405	0.037	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	G401_SOFT_TISSUE	0.07	0.82	0.6775	TRUE	519	3926	326	965	0	FALSE	ACH-000096
G401_SOFT_TISSUE	KANSL1--ARL17B	36	35	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	76	203	0.48	0.26	0.4435	0.4311	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	G401_SOFT_TISSUE	0.26	0.48	0.8746	TRUE	181	1564	124	196	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-ND6--MT-TE	36	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4435	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G401_SOFT_TISSUE	1	1	0.4435	FALSE	499	1288	110	792	0	FALSE	ACH-000096
G401_SOFT_TISSUE	RP11-494M8.4--OVCH2	19	64	RP11-494M8.4	10901	chr11:7775931:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.234	0.7884	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	G401_SOFT_TISSUE	1	1	1.0224	FALSE	16	1	1	11	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-ND6--MT-TE	30	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3695	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G401_SOFT_TISSUE	1	1	0.3695	FALSE	499	1288	110	792	0	FALSE	ACH-000096
G401_SOFT_TISSUE	RP11-680G10.1--GSE1	23	24	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	27	1	0.64	0.2833	0.2956	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	G401_SOFT_TISSUE	0.64	1	0.5789	TRUE	458	1351	185	561	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	24	4	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.82	0.2956	0.0493	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	0.82	1	0.3449	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-TA--MT-TC	24	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2956	0.0123	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	G401_SOFT_TISSUE	1	1	0.3079	FALSE	462	80	0	856	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	21	4	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.83	0.2587	0.0493	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	0.83	1	0.308	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	RP11-494M8.4--OVCH2	5	56	RP11-494M8.4	8241	chr11:7873820:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	12	0	0.84	1	0.0616	0.6898	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	G401_SOFT_TISSUE	0.84	1	0.7514	FALSE	1	0	0	7	0	FALSE	ACH-000096
G401_SOFT_TISSUE	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2094	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	G401_SOFT_TISSUE	1	1	0.2094	TRUE	0	0	0	518	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	14	4	MT-CO3	1099	chrM:9305:+	MT-ATP6	5328	chrM:9070:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.82	0.1725	0.0493	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	0.82	1	0.2218	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	AC024084.1--AC009784.3	13	7	AC024084.1	2134	chr7:135715781:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	2	1	0.91	0.1601	0.0862	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	G401_SOFT_TISSUE	0.91	1	0.2463	FALSE	1	6	0	14	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-TA--MT-TC	14	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1725	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	G401_SOFT_TISSUE	1	1	0.1725	FALSE	462	80	0	856	0	FALSE	ACH-000096
G401_SOFT_TISSUE	RP11-680G10.1--GSE1	11	12	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	95	1	0.19	0.1355	0.1478	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	G401_SOFT_TISSUE	0.19	1	0.2833	TRUE	465	1949	224	605	0	FALSE	ACH-000096
G401_SOFT_TISSUE	RP11-494M8.4--OVCH2	1	51	RP11-494M8.4	7189	chr11:7876430:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	11	0	0.83	1	0.0123	0.6282	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	G401_SOFT_TISSUE	0.83	1	0.6405	FALSE	3	0	0	2	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	12	4	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.64	0.1478	0.0493	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	0.64	1	0.1971	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	12	1	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	45	0	0.22	1	0.1478	0.0123	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	0.22	1	0.1601	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	12	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	36	0	0.27	1	0.1478	0.0123	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	0.27	1	0.1601	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	9	6	MT-CO3	1220	chrM:9426:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	42	6	0.26	0.71	0.1109	0.0739	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	0.26	0.71	0.1848	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-ND6--MT-TE	9	2	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.1109	0.0246	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G401_SOFT_TISSUE	0.92	1	0.1355	FALSE	499	1288	110	792	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-ND6--MT-TE	9	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1109	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G401_SOFT_TISSUE	1	1	0.1109	FALSE	499	1288	110	792	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-TA--MT-TC	8	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0985	0.0246	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	G401_SOFT_TISSUE	1	1	0.1231	FALSE	462	80	0	856	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	5	10	MT-CO3	1220	chrM:9426:+	MT-ATP6	5242	chrM:8984:+	INCL_NON_REF_SPLICE	YES	42	21	0.26	0.42	0.0616	0.1232	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	0.26	0.42	0.1848	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	7	0	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	1	1	0.0862	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	RP11-494M8.4--OVCH2	1	24	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15893	chr11:7725336:-	ONLY_REF_SPLICE	YES	13	28	0.66	0.47	0.0123	0.2956	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	G401_SOFT_TISSUE	0.47	0.66	0.3079	FALSE	32	0	0	22	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	5	7	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	48	9	0.2	0.57	0.0616	0.0862	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	0.2	0.57	0.1478	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	6	1	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	45	0	0.13	1	0.0739	0.0123	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	0.13	1	0.0862	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	5	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.91	0.91	0.0616	0.0616	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	G401_SOFT_TISSUE	0.91	0.91	0.1232	FALSE	515	4851	409	746	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	5	4	MT-CO3	1085	chrM:9291:+	MT-ATP6	5314	chrM:9056:+	INCL_NON_REF_SPLICE	YES	0	7	1	0.56	0.0616	0.0493	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	0.56	1	0.1109	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	AC024084.1--AC009784.3	4	7	AC024084.1	3174	chr7:135743253:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	1	2	0.92	0.85	0.0493	0.0862	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	G401_SOFT_TISSUE	0.85	0.92	0.1355	FALSE	2	5	0	14	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-TA--MT-TC	5	3	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0.037	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	G401_SOFT_TISSUE	1	1	0.0986	FALSE	462	80	0	856	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	4	5	MT-CO3	1045	chrM:9251:+	MT-ATP6	5251	chrM:8993:+	INCL_NON_REF_SPLICE	YES	0	15	1	0.38	0.0493	0.0616	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	0.38	1	0.1109	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-ND6--MT-TE	4	3	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0493	0.037	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G401_SOFT_TISSUE	0.88	1	0.0863	FALSE	499	1288	110	792	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-TA--MT-TC	4	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0.037	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	G401_SOFT_TISSUE	1	1	0.0863	FALSE	462	80	0	856	0	FALSE	ACH-000096
G401_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	3	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.037	0.0862	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	G401_SOFT_TISSUE	0.91	1	0.1232	FALSE	407	2205	196	549	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-ATP6--MT-CO2	4	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	42	2	0.12	0.75	0.0493	0.0246	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	G401_SOFT_TISSUE	0.12	0.75	0.0739	FALSE	59	21	0	114	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	3	6	MT-CO3	1196	chrM:9402:+	MT-ATP6	5314	chrM:9056:+	INCL_NON_REF_SPLICE	YES	47	7	0.16	0.56	0.037	0.0739	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	0.16	0.56	0.1109	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	3	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	34	9	0.21	0.5	0.037	0.0739	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	0.21	0.5	0.1109	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	4	1	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	34	0	0.13	1	0.0493	0.0123	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	0.13	1	0.0616	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	4	1	MT-CO3	1396	chrM:9602:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	39	0	0.11	1	0.0493	0.0123	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	0.11	1	0.0616	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	1	1	0.0493	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G401_SOFT_TISSUE	1	1	0.0493	FALSE	499	1288	110	792	0	FALSE	ACH-000096
G401_SOFT_TISSUE	AC024084.1--AC009784.3	3	3	AC024084.1	2134	chr7:135715781:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	YES	0	48	1	0.11	0.037	0.037	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	G401_SOFT_TISSUE	0.11	1	0.074	FALSE	0	3	0	12	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-ATP6--MT-CO2	3	2	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	44	1	0.1	0.83	0.037	0.0246	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	G401_SOFT_TISSUE	0.1	0.83	0.0616	FALSE	59	21	0	114	0	FALSE	ACH-000096
G401_SOFT_TISSUE	CNTN6--AC090044.1	3	1	CNTN6	1545	chr3:1134804:+	AC090044.1	35601	chr3:884059:+	ONLY_REF_SPLICE	YES	0	17	1	0.19	0.037	0.0123	CNTN6->Oncogene{Bushman},chr3:1134260-1445901:+,contactin_6,AC090044.1->chr3:577914-887698:+	G401_SOFT_TISSUE	0.19	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000096
G401_SOFT_TISSUE	KANSL1--ARL17B	2	5	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	88	203	0.07	0.03	0.0246	0.0616	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	G401_SOFT_TISSUE	0.03	0.07	0.0862	TRUE	105	90	7	93	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	3	1	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	34	0	0.11	1	0.037	0.0123	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	0.11	1	0.0493	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-ND6--MT-TE	3	1	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0.0123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G401_SOFT_TISSUE	1	1	0.0493	FALSE	499	1288	110	792	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-TW--MT-ND2	3	1	MT-TW	1004	chrM:5515:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	40	1	0.09	0.037	0.0123	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	G401_SOFT_TISSUE	0.09	1	0.0493	FALSE	14	0	0	19	0	FALSE	ACH-000096
G401_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.0246	0.0616	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	G401_SOFT_TISSUE	0.88	1	0.0862	FALSE	467	2173	244	435	0	FALSE	ACH-000096
G401_SOFT_TISSUE	FARS2--RP3-380B8.4	3	0	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	G401_SOFT_TISSUE	1	1	0.037	FALSE	27	82	4	18	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1092	chrM:9298:+	MT-ATP6	5414	chrM:9156:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	1	1	0.037	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	G401_SOFT_TISSUE	1	1	0.037	FALSE	189	492	56	216	0	FALSE	ACH-000096
G401_SOFT_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G401_SOFT_TISSUE	1	1	0.037	FALSE	499	1288	110	792	0	FALSE	ACH-000096
G401_SOFT_TISSUE	RPSAP52--HMGA2	3	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	G401_SOFT_TISSUE	1	1	0.037	FALSE	0	59	0	125	0	FALSE	ACH-000096
G401_SOFT_TISSUE	STX18-AS1--MSX1	2	4	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	15	455	0.29	0.01	0.0246	0.0493	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	G401_SOFT_TISSUE	0.01	0.29	0.0739	FALSE	37	101	7	40	0	FALSE	ACH-000096
G401_SOFT_TISSUE	TRA2A--IGF2BP3	3	0	TRA2A	1253	chr7:23571408:-	IGF2BP3	34521	chr7:23358873:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	HGNC_GENEFAM,NEIGHBORS[34313],TRA2A->chr7:23544399-23571660:-,transformer_2_alpha_homolog,IGF2BP3->chr7:23349828-23510086:-,insulin_like_growth_factor_2_mRNA_binding_protein_3	G401_SOFT_TISSUE	1	1	0.037	FALSE	0	0	0	2	0	FALSE	ACH-000096
G401_SOFT_TISSUE	EIF5A--COASY	2	0	EIF5A	1754	chr17:7211071:+	COASY	12416	chr17:40716464:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A,COASY->Coenzyme_A_synthase,chr17:40713485-40718295:+	G401_SOFT_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000096
G401_SOFT_TISSUE	RP11-543D5.1--D2HGDH	2	0	RP11-543D5.1	1120	chr1:48154254:+	D2HGDH	9481	chr2:242680448:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	RP11-543D5.1->chr1:48154135-48169055:+,D2HGDH->D-2-hydroxyglutarate_dehydrogenase,chr2:242673994-242708231:+	G401_SOFT_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000096
G401_SOFT_TISSUE	STIP1--PPP2R5B	2	0	STIP1	3460	chr11:63960759:+	PPP2R5B	24886	chr11:64698908:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1,PPP2R5B->chr11:64685025-64701945:+,protein_phosphatase_2_regulatory_subunit_B',_beta	G401_SOFT_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000096
G401_SOFT_TISSUE	TOP2B--NGLY1	2	0	TOP2B	15040	chr3:25668678:-	NGLY1	48803	chr3:25775473:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},LOCAL_REARRANGEMENT:-:[54037],TOP2B->Oncogene{Bushman},chr3:25639475-25706398:-,topoisomerase_(DNA)_II_beta,NGLY1->N-glycanase_1,chr3:25760435-25831530:-	G401_SOFT_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000096
G401_SOFT_TISSUE	ZNF770--L3MBTL3	2	0	ZNF770	1731	chr15:35279758:-	L3MBTL3	16244	chr6:130343372:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	ZNF770->chr15:35270542-35280488:-,zinc_finger_protein_770,L3MBTL3->chr6:130334844-130462594:+,l(3)mbt-like_3_(Drosophila)	G401_SOFT_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000096
G401_SOFT_TISSUE	AC024084.1--AC009784.3	1	3	AC024084.1	3174	chr7:135743253:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	YES	1	48	0.8	0.08	0.0123	0.037	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	G401_SOFT_TISSUE	0.08	0.8	0.0493	FALSE	0	2	0	6	0	FALSE	ACH-000096
G401_SOFT_TISSUE	FAM172A--NR2F1-AS1	1	2	FAM172A	12880	chr5:93111865:-	NR2F1-AS1	39228	chr5:92747215:-	ONLY_REF_SPLICE	NO	34	68	0.08	0.04	0.0123	0.0246	NEIGHBORS[32421],FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-	G401_SOFT_TISSUE	0.04	0.08	0.0369	FALSE	3	3	0	3	0	FALSE	ACH-000096
G401_SOFT_TISSUE	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	170	1	0.02	0.0123	0.0246	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	G401_SOFT_TISSUE	0.02	1	0.0369	TRUE	64	13	3	59	0	FALSE	ACH-000096
G401_SOFT_TISSUE	AC131097.3--HDLBP	1	1	AC131097.3	2273	chr2:242824786:+	HDLBP	17739	chr2:242207956:-	ONLY_REF_SPLICE	YES	3	344	0.4	0.01	0.0123	0.0123	AC131097.3->chr2:242823514-243020873:+,HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein	G401_SOFT_TISSUE	0.01	0.4	0.0246	FALSE	0	1	0	1	0	FALSE	ACH-000096
G401_SOFT_TISSUE	ANKRD12--VAPA	1	1	ANKRD12	1738	chr18:9136963:+	VAPA	36164	chr18:9931807:+	ONLY_REF_SPLICE	NO	25	378	0.07	0.01	0.0123	0.0123	GTEx&tcga_normals:1/3694=0.03%,ANKRD12->ankyrin_repeat_domain_12,chr18:9136226-9285983:+,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	G401_SOFT_TISSUE	0.01	0.07	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000096
G401_SOFT_TISSUE	CCSER1--SNCA	1	1	CCSER1	8366	chr4:91321280:+	SNCA	44175	chr4:90749335:-	ONLY_REF_SPLICE	YES	25	2173	0.07	0	0.0123	0.0123	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,SNCA->chr4:90645250-90759466:-,synuclein_alpha	G401_SOFT_TISSUE	0	0.07	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000096
G401_SOFT_TISSUE	CNTN6--AC090044.1	1	1	CNTN6	1545	chr3:1134804:+	AC090044.1	34505	chr3:882398:+	ONLY_REF_SPLICE	NO	0	13	1	0.13	0.0123	0.0123	CNTN6->Oncogene{Bushman},chr3:1134260-1445901:+,contactin_6,AC090044.1->chr3:577914-887698:+	G401_SOFT_TISSUE	0.13	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000096
G401_SOFT_TISSUE	COL11A1--UBAP2L	1	1	COL11A1	4969	chr1:103540174:-	UBAP2L	84510	chr1:154232424:+	ONLY_REF_SPLICE	NO	3375	600	0	0	0.0123	0.0123	COL11A1->Oncogene{Bushman},chr1:103342023-103574052:-,collagen_type_XI_alpha_1,UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like	G401_SOFT_TISSUE	0	0	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000096
G401_SOFT_TISSUE	NAA15--ELF2	1	1	NAA15	1377	chr4:140222985:+	ELF2	36741	chr4:140060651:-	ONLY_REF_SPLICE	YES	280	17	0.01	0.11	0.0123	0.0123	NAA15->N(alpha)-acetyltransferase_15,_NatA_auxiliary_subunit,chr4:140222609-140341187:+,ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-	G401_SOFT_TISSUE	0.01	0.11	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000096
G401_SOFT_TISSUE	NCOR2--UBC	1	1	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	160	164	0.01	0.01	0.0123	0.0123	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	G401_SOFT_TISSUE	0.01	0.01	0.0246	FALSE	52	148	13	33	0	FALSE	ACH-000096
G401_SOFT_TISSUE	RP11-494M8.4--OVCH2	1	1	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	12	0	0.14	1	0.0123	0.0123	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	G401_SOFT_TISSUE	0.14	1	0.0246	FALSE	60	13	8	23	0	FALSE	ACH-000096
G401_SOFT_TISSUE	TAF1D--PHF14	1	1	TAF1D	6933	chr11:93470230:-	PHF14	41565	chr7:11150977:+	ONLY_REF_SPLICE	YES	465	142	0	0.01	0.0123	0.0123	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Muscle_-_Skeletal=1},TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	G401_SOFT_TISSUE	0	0.01	0.0246	FALSE	1	3	0	3	0	FALSE	ACH-000096
DMS53_LUNG	KRT7--OR7E47P	92	113	KRT7	10701	chr12:52639416:+	OR7E47P	21103	chr12:52501163:+	ONLY_REF_SPLICE	YES	1681	14	0.11	0.94	1.1362	1.3955	KRT7->chr12:52626304-52645970:+,keratin_7,OR7E47P->chr12:52473480-52502045:+,olfactory_receptor_family_7_subfamily_E_member_47_pseudogene	DMS53_LUNG	0.11	0.94	2.5317	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	KRT7--OR7E47P	74	120	KRT7	12255	chr12:52641995:+	OR7E47P	21103	chr12:52501163:+	ONLY_REF_SPLICE	YES	1575	14	0.11	0.93	0.9139	1.482	KRT7->chr12:52626304-52645970:+,keratin_7,OR7E47P->chr12:52473480-52502045:+,olfactory_receptor_family_7_subfamily_E_member_47_pseudogene	DMS53_LUNG	0.11	0.93	2.3959	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	RASSF8--TSPAN9	99	2	RASSF8	1120	chr12:26112081:+	TSPAN9	29856	chr12:3387587:+	ONLY_REF_SPLICE	YES	0	108	1	0.48	1.2226	0.0247	RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+,TSPAN9->chr12:3186521-3395730:+,tetraspanin_9	DMS53_LUNG	0.48	1	1.2473	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	R3HCC1L--RP11-887P2.3	63	83	R3HCC1L	3647	chr10:99923154:+	RP11-887P2.3	17427	chr12:94035223:-	INCL_NON_REF_SPLICE	YES	26	570	0.85	0.2	0.778	1.025	R3HCC1L->R3H_domain_and_coiled-coil_containing_1_like,chr10:99894387-100004654:+,RP11-887P2.3->chr12:94034598-94035362:-	DMS53_LUNG	0.2	0.85	1.803	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	TIMM23B--LINC00843	73	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.97	0.9015	0.4199	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DMS53_LUNG	0.97	1	1.3214	TRUE	508	994	45	981	0	FALSE	ACH-000698
DMS53_LUNG	NLRP1--STAT5A	61	1	NLRP1	1094	chr17:5522651:-	STAT5A	36362	chr17:40443990:+	ONLY_REF_SPLICE	YES	0	57	1	0.52	0.7533	0.0123	NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-,STAT5A->Oncogene{Bushman},chr17:40439565-40463961:+,signal_transducer_and_activator_of_transcription_5A	DMS53_LUNG	0.52	1	0.7656	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	TIMM23--RP11-464F9.1	47	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	410	16	0.12	0.77	0.5804	0.0864	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DMS53_LUNG	0.12	0.77	0.6668	TRUE	519	3926	326	965	0	FALSE	ACH-000698
DMS53_LUNG	GALNT8--PRMT8	35	29	GALNT8	10904	chr12:4874712:+	PRMT8	27992	chr12:3662817:+	ONLY_REF_SPLICE	YES	167	126	0.28	0.34	0.4322	0.3581	{Klijn_CCL:Lung=1},GALNT8->chr12:4829507-4960277:+,polypeptide_N-acetylgalactosaminyltransferase_8,PRMT8->chr12:3490515-3703139:+,protein_arginine_methyltransferase_8	DMS53_LUNG	0.28	0.34	0.7903	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	MT-ND6--MT-TE	38	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4693	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS53_LUNG	1	1	0.4693	FALSE	499	1288	110	792	0	FALSE	ACH-000698
DMS53_LUNG	MT-ND6--MT-TE	35	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4322	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS53_LUNG	1	1	0.4322	FALSE	499	1288	110	792	0	FALSE	ACH-000698
DMS53_LUNG	CTD-2008L17.1--RP11-456O19.2	24	24	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	3	0	0.94	1	0.2964	0.2964	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	DMS53_LUNG	0.94	1	0.5928	FALSE	20	187	4	79	0	FALSE	ACH-000698
DMS53_LUNG	NLRP1--STAT5A	27	1	NLRP1	1094	chr17:5522651:-	STAT5A	37452	chr17:40447637:+	ONLY_REF_SPLICE	YES	0	60	1	0.32	0.3334	0.0123	NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-,STAT5A->Oncogene{Bushman},chr17:40439565-40463961:+,signal_transducer_and_activator_of_transcription_5A	DMS53_LUNG	0.32	1	0.3457	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	C15orf57--CBX3	20	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	65	39	0.36	0.48	0.247	0.1976	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DMS53_LUNG	0.36	0.48	0.4446	TRUE	267	562	48	632	0	FALSE	ACH-000698
DMS53_LUNG	KIF26B--EFCAB2	19	18	KIF26B	17029	chr1:245809582:+	EFCAB2	50282	chr1:245285222:+	ONLY_REF_SPLICE	YES	33	1	0.53	0.97	0.2346	0.2223	LOCAL_REARRANGEMENT:+:[27821],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,EFCAB2->EF-hand_calcium_binding_domain_2,chr1:245133007-245290466:+	DMS53_LUNG	0.53	0.97	0.4569	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	TMEM260--RAB1B	18	22	TMEM260	23560	chr14:57103316:+	RAB1B	32086	chr11:66039268:+	ONLY_REF_SPLICE	YES	55	45	0.42	0.47	0.2223	0.2717	TMEM260->chr14:56955072-57117324:+,transmembrane_protein_260,RAB1B->RAB1B,_member_RAS_oncogene_family,chr11:66036004-66044963:+	DMS53_LUNG	0.42	0.47	0.494	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	MT-TA--MT-TC	22	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2717	0.0123	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DMS53_LUNG	1	1	0.284	FALSE	462	80	0	856	0	FALSE	ACH-000698
DMS53_LUNG	USP43--CNTLN	17	18	USP43	4675	chr17:9570068:+	CNTLN	28400	chr9:17226201:+	ONLY_REF_SPLICE	YES	20	26	0.64	0.57	0.2099	0.2223	{Klijn_CCL:Lung=1},USP43->chr17:9548015-9633008:+,ubiquitin_specific_peptidase_43,CNTLN->centlein,chr9:17134980-17503921:+	DMS53_LUNG	0.57	0.64	0.4322	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	CPNE8--TRIM3	18	10	CPNE8	13645	chr12:39124085:-	TRIM3	36065	chr11:6486962:-	ONLY_REF_SPLICE	YES	42	19	0.4	0.6	0.2223	0.1235	CPNE8->chr12:39040624-39301232:-,copine_8,TRIM3->chr11:6469843-6495689:-,tripartite_motif_containing_3	DMS53_LUNG	0.4	0.6	0.3458	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	WHSC1L1--RP11-395E19.7	15	16	WHSC1L1	1474	chr8:38239317:-	RP11-395E19.7	42186	chr9:40741559:-	ONLY_REF_SPLICE	YES	75	0	0.29	1	0.1852	0.1976	WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-,RP11-395E19.7->chr9:40740776-40742447:-	DMS53_LUNG	0.29	1	0.3828	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	NLRP1--STAT5A	17	2	NLRP1	1094	chr17:5522651:-	STAT5A	33238	chr17:40440074:+	ONLY_REF_SPLICE	YES	0	31	1	0.38	0.2099	0.0247	NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-,STAT5A->Oncogene{Bushman},chr17:40439565-40463961:+,signal_transducer_and_activator_of_transcription_5A	DMS53_LUNG	0.38	1	0.2346	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	LINC01014--KCNMB2	15	2	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	7	1	0.71	0.94	0.1852	0.0247	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	DMS53_LUNG	0.71	0.94	0.2099	FALSE	11	60	26	37	0	FALSE	ACH-000698
DMS53_LUNG	HERC1--DAPK2	12	13	HERC1	1121	chr15:64126021:-	DAPK2	109704	chr15:64200799:-	ONLY_REF_SPLICE	YES	3	13	0.89	0.66	0.1482	0.1605	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:-:[73094],HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2	DMS53_LUNG	0.66	0.89	0.3087	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	RP11-59N23.1--CMAS	13	8	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	14	397	0.6	0.05	0.1605	0.0988	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	DMS53_LUNG	0.05	0.6	0.2593	TRUE	21	102	17	28	0	FALSE	ACH-000698
DMS53_LUNG	RP4-565E6.1--HYDIN	12	7	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	6	1	0.76	0.1482	0.0864	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	DMS53_LUNG	0.76	1	0.2346	TRUE	456	1387	91	133	0	FALSE	ACH-000698
DMS53_LUNG	C15orf57--CBX3	11	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	64	39	0.24	0.34	0.1358	0.1111	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DMS53_LUNG	0.24	0.34	0.2469	TRUE	267	562	48	632	0	FALSE	ACH-000698
DMS53_LUNG	KIF26B--EFCAB2	7	23	KIF26B	17029	chr1:245809582:+	EFCAB2	45790	chr1:245250547:+	ONLY_REF_SPLICE	YES	33	7	0.48	0.81	0.0864	0.284	LOCAL_REARRANGEMENT:+:[27821],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,EFCAB2->EF-hand_calcium_binding_domain_2,chr1:245133007-245290466:+	DMS53_LUNG	0.48	0.81	0.3704	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	MT-ND6--MT-TE	12	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1482	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS53_LUNG	1	1	0.1482	FALSE	499	1288	110	792	0	FALSE	ACH-000698
DMS53_LUNG	GALNT8--PRMT8	4	31	GALNT8	10904	chr12:4874712:+	PRMT8	27044	chr12:3661869:+	ONLY_REF_SPLICE	YES	167	144	0.17	0.2	0.0494	0.3828	{Klijn_CCL:Lung=1},GALNT8->chr12:4829507-4960277:+,polypeptide_N-acetylgalactosaminyltransferase_8,PRMT8->chr12:3490515-3703139:+,protein_arginine_methyltransferase_8	DMS53_LUNG	0.17	0.2	0.4322	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	RP11-96H19.1--RP11-446N19.1	8	15	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.0988	0.1852	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DMS53_LUNG	0.96	1	0.284	FALSE	407	2205	196	549	0	FALSE	ACH-000698
DMS53_LUNG	RP11-96H19.1--RP11-446N19.1	9	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1111	0.1358	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DMS53_LUNG	0.95	1	0.2469	FALSE	515	4851	409	746	0	FALSE	ACH-000698
DMS53_LUNG	MT-TA--MT-TC	11	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1358	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DMS53_LUNG	1	1	0.1358	FALSE	462	80	0	856	0	FALSE	ACH-000698
DMS53_LUNG	NIPA2--POLA1	11	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1358	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	DMS53_LUNG	1	1	0.1358	TRUE	46	1352	75	139	0	FALSE	ACH-000698
DMS53_LUNG	HERC1--DAPK2	8	10	HERC1	1116	chr15:64126026:-	DAPK2	109704	chr15:64200799:-	ONLY_REF_SPLICE	YES	2	13	0.9	0.58	0.0988	0.1235	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:-:[73094],HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2	DMS53_LUNG	0.58	0.9	0.2223	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	KRT7--OR7E47P	8	10	KRT7	8206	chr12:52636921:+	OR7E47P	21103	chr12:52501163:+	ONLY_REF_SPLICE	YES	2536	14	0.01	0.56	0.0988	0.1235	KRT7->chr12:52626304-52645970:+,keratin_7,OR7E47P->chr12:52473480-52502045:+,olfactory_receptor_family_7_subfamily_E_member_47_pseudogene	DMS53_LUNG	0.01	0.56	0.2223	TRUE	0	1	0	1	1	FALSE	ACH-000698
DMS53_LUNG	LINC01014--KCNMB2	10	2	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	7	3	0.63	0.8	0.1235	0.0247	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	DMS53_LUNG	0.63	0.8	0.1482	FALSE	12	33	18	33	0	FALSE	ACH-000698
DMS53_LUNG	RP11-120D5.1--MID1	9	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	6	1	0.7	0.1111	0.0617	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	DMS53_LUNG	0.7	1	0.1728	FALSE	16	356	14	466	0	FALSE	ACH-000698
DMS53_LUNG	CTD-2008L17.1--RP11-456O19.2	7	12	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	3	4	0.86	0.83	0.0864	0.1482	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	DMS53_LUNG	0.83	0.86	0.2346	FALSE	33	240	4	98	0	FALSE	ACH-000698
DMS53_LUNG	MT-ND6--MT-TE	9	2	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.1111	0.0247	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS53_LUNG	0.85	1	0.1358	FALSE	499	1288	110	792	0	FALSE	ACH-000698
DMS53_LUNG	RP11-123O10.4--GRIP1	8	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0988	0.0741	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DMS53_LUNG	1	1	0.1729	FALSE	416	2512	207	587	0	FALSE	ACH-000698
DMS53_LUNG	AP003900.6--RP11-435B5.4	9	0	AP003900.6	1122	chr21:11169841:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1111	0	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	DMS53_LUNG	1	1	0.1111	TRUE	1	3	0	6	3	TRUE	ACH-000698
DMS53_LUNG	RP11-634B7.4--TRIM58	7	8	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	4	0.94	0.79	0.0864	0.0988	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	DMS53_LUNG	0.79	0.94	0.1852	TRUE	158	633	76	73	0	FALSE	ACH-000698
DMS53_LUNG	RP11-6N13.1--CTD-2374C24.1	6	10	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0741	0.1235	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	DMS53_LUNG	1	1	0.1976	TRUE	5	4	0	46	0	FALSE	ACH-000698
DMS53_LUNG	MT-CO3--MT-ATP6	8	1	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.0988	0.0123	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS53_LUNG	0.64	1	0.1111	FALSE	189	492	56	216	0	FALSE	ACH-000698
DMS53_LUNG	RP11-96H19.1--RP11-446N19.1	4	14	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.9	1	0.0494	0.1729	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DMS53_LUNG	0.9	1	0.2223	FALSE	467	2173	244	435	0	FALSE	ACH-000698
DMS53_LUNG	MT-CO3--MT-ATP6	7	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.0864	0.0123	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS53_LUNG	0.73	1	0.0987	FALSE	189	492	56	216	0	FALSE	ACH-000698
DMS53_LUNG	MT-ND6--MT-TE	7	0	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0864	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS53_LUNG	1	1	0.0864	FALSE	499	1288	110	792	0	FALSE	ACH-000698
DMS53_LUNG	GALNT4--MGAT4C	6	3	GALNT4	2143	chr12:89918897:-	MGAT4C	10880	chr12:87232657:-	INCL_NON_REF_SPLICE	YES	19	0	0.32	1	0.0741	0.037	GALNT4->chr12:89913185-89920039:-,polypeptide_N-acetylgalactosaminyltransferase_4,MGAT4C->MGAT4_family_member_C,chr12:86372516-87232681:-	DMS53_LUNG	0.32	1	0.1111	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	RASSF8--TSPAN9	6	2	RASSF8	1120	chr12:26112081:+	TSPAN9	29933	chr12:3387664:+	INCL_NON_REF_SPLICE	YES	0	120	1	0.06	0.0741	0.0247	RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+,TSPAN9->chr12:3186521-3395730:+,tetraspanin_9	DMS53_LUNG	0.06	1	0.0988	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	RASSF8--TSPAN9	6	2	RASSF8	1120	chr12:26112081:+	TSPAN9	28698	chr12:3382255:+	INCL_NON_REF_SPLICE	YES	0	95	1	0.08	0.0741	0.0247	RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+,TSPAN9->chr12:3186521-3395730:+,tetraspanin_9	DMS53_LUNG	0.08	1	0.0988	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	NLRP1--STAT5A	6	1	NLRP1	1094	chr17:5522651:-	STAT5A	34584	chr17:40441420:+	ONLY_REF_SPLICE	YES	0	7	1	0.5	0.0741	0.0123	NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-,STAT5A->Oncogene{Bushman},chr17:40439565-40463961:+,signal_transducer_and_activator_of_transcription_5A	DMS53_LUNG	0.5	1	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	PEX5L--STRADB	6	1	PEX5L	1475	chr3:179754367:-	STRADB	34792	chr2:202319469:+	ONLY_REF_SPLICE	YES	7	6	0.5	0.54	0.0741	0.0123	PEX5L->chr3:179512746-179754841:-,peroxisomal_biogenesis_factor_5-like,STRADB->STE20-related_kinase_adaptor_beta,chr2:202252581-202345569:+	DMS53_LUNG	0.5	0.54	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	WHSC1L1--RP11-395E19.7	2	17	WHSC1L1	1474	chr8:38239317:-	RP11-395E19.7	41298	chr9:40742447:-	ONLY_REF_SPLICE	YES	75	0	0.2	1	0.0247	0.2099	WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-,RP11-395E19.7->chr9:40740776-40742447:-	DMS53_LUNG	0.2	1	0.2346	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	AEBP2--RP11-405A12.2	6	0	AEBP2	15624	chr12:19873625:+	RP11-405A12.2	19888	chr12:20076132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0741	0	NEIGHBORS[54650],AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,RP11-405A12.2->chr12:19928385-20162871:+	DMS53_LUNG	1	1	0.0741	FALSE	0	0	0	8	0	FALSE	ACH-000698
DMS53_LUNG	MT-CO3--MT-ATP6	5	3	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	4	0.73	0.67	0.0617	0.037	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS53_LUNG	0.67	0.73	0.0987	FALSE	189	492	56	216	0	FALSE	ACH-000698
DMS53_LUNG	ESYT2--AC073316.2	5	2	ESYT2	2165	chr7:158621780:-	AC073316.2	33381	chr7:3236562:-	ONLY_REF_SPLICE	YES	4	4	0.64	0.64	0.0617	0.0247	ESYT2->chr7:158523686-158622944:-,extended_synaptotagmin_protein_2,AC073316.2->chr7:3236258-3237888:-	DMS53_LUNG	0.64	0.64	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	GNGT1--AC002076.10	5	2	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	13	0	0.35	1	0.0617	0.0247	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	DMS53_LUNG	0.35	1	0.0864	FALSE	0	28	0	37	0	FALSE	ACH-000698
DMS53_LUNG	RP11-6N13.1--CTD-2374C24.1	3	10	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0.1235	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	DMS53_LUNG	1	1	0.1605	TRUE	1	1	0	17	1	FALSE	ACH-000698
DMS53_LUNG	RP11-6N13.1--CTD-2374C24.1	3	10	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0.1235	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	DMS53_LUNG	1	1	0.1605	TRUE	5	12	0	42	0	FALSE	ACH-000698
DMS53_LUNG	RP11-96H19.1--RP11-446N19.1	1	18	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.9	1	0.0123	0.2223	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DMS53_LUNG	0.9	1	0.2346	FALSE	192	492	57	212	0	FALSE	ACH-000698
DMS53_LUNG	C15orf57--CBX3	3	9	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	64	39	0.16	0.24	0.037	0.1111	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DMS53_LUNG	0.16	0.24	0.1481	TRUE	267	562	48	632	0	FALSE	ACH-000698
DMS53_LUNG	ABR--CDK14	5	0	ABR	39995	chr17:906926:-	CDK14	66182	chr7:90675212:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0617	0	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14	DMS53_LUNG	1	1	0.0617	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	RP11-96H19.1--RP11-446N19.1	1	15	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0123	0.1852	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DMS53_LUNG	0.94	1	0.1975	FALSE	275	511	55	178	0	FALSE	ACH-000698
DMS53_LUNG	MT-ND6--MT-TE	4	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0494	0.0123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS53_LUNG	0.83	1	0.0617	FALSE	499	1288	110	792	0	FALSE	ACH-000698
DMS53_LUNG	MT-TA--MT-TC	4	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0494	0.0123	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DMS53_LUNG	1	1	0.0617	FALSE	462	80	0	856	0	FALSE	ACH-000698
DMS53_LUNG	NLRP1--STAT5A	4	1	NLRP1	1094	chr17:5522651:-	STAT5A	37457	chr17:40447642:+	INCL_NON_REF_SPLICE	YES	0	57	1	0.08	0.0494	0.0123	NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-,STAT5A->Oncogene{Bushman},chr17:40439565-40463961:+,signal_transducer_and_activator_of_transcription_5A	DMS53_LUNG	0.08	1	0.0617	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	NLRP1--STAT5A	4	1	NLRP1	1094	chr17:5522651:-	STAT5A	35048	chr17:40441884:+	ONLY_REF_SPLICE	YES	0	32	1	0.14	0.0494	0.0123	NLRP1->NLR_family,_pyrin_domain_containing_1,chr17:5402747-5522744:-,STAT5A->Oncogene{Bushman},chr17:40439565-40463961:+,signal_transducer_and_activator_of_transcription_5A	DMS53_LUNG	0.14	1	0.0617	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	KIF26B--EFCAB2	3	4	KIF26B	17029	chr1:245809582:+	EFCAB2	52669	chr1:245287609:+	INCL_NON_REF_SPLICE	YES	33	7	0.17	0.5	0.037	0.0494	LOCAL_REARRANGEMENT:+:[27821],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,EFCAB2->EF-hand_calcium_binding_domain_2,chr1:245133007-245290466:+	DMS53_LUNG	0.17	0.5	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0494	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS53_LUNG	1	1	0.0494	FALSE	499	1288	110	792	0	FALSE	ACH-000698
DMS53_LUNG	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0494	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DMS53_LUNG	1	1	0.0494	FALSE	292	1546	117	613	0	FALSE	ACH-000698
DMS53_LUNG	GNGT1--AC002076.10	3	3	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	18	0	0.25	1	0.037	0.037	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	DMS53_LUNG	0.25	1	0.074	FALSE	0	10	0	30	0	FALSE	ACH-000698
DMS53_LUNG	MT-CO3--MT-ATP6	3	3	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.67	0.037	0.037	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS53_LUNG	0.67	1	0.074	FALSE	189	492	56	216	0	FALSE	ACH-000698
DMS53_LUNG	PEX5L--STRADB	3	2	PEX5L	4648	chr3:179689382:-	STRADB	34792	chr2:202319469:+	ONLY_REF_SPLICE	YES	7	6	0.42	0.45	0.037	0.0247	PEX5L->chr3:179512746-179754841:-,peroxisomal_biogenesis_factor_5-like,STRADB->STE20-related_kinase_adaptor_beta,chr2:202252581-202345569:+	DMS53_LUNG	0.42	0.45	0.0617	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	5	0	0.44	1	0.037	0.0123	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS53_LUNG	0.44	1	0.0493	FALSE	189	492	56	216	0	FALSE	ACH-000698
DMS53_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0.0123	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS53_LUNG	1	1	0.0493	FALSE	189	492	56	216	0	FALSE	ACH-000698
DMS53_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.57	0.037	0.0123	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS53_LUNG	0.57	1	0.0493	FALSE	189	492	56	216	0	FALSE	ACH-000698
DMS53_LUNG	ST3GAL3--KDM4A	3	1	ST3GAL3	5679	chr1:44257820:+	KDM4A	27365	chr1:44118808:+	ONLY_REF_SPLICE	YES	33	25	0.11	0.14	0.037	0.0123	LOCAL_REARRANGEMENT:+:[309],ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,KDM4A->chr1:44115829-44171186:+,lysine_demethylase_4A	DMS53_LUNG	0.11	0.14	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	YAF2--ALG10B	3	1	YAF2	1751	chr12:42631401:-	ALG10B	22380	chr12:38710386:+	INCL_NON_REF_SPLICE	YES	172	0	0.02	1	0.037	0.0123	YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,ALG10B->ALG10B,_alpha-1,2-glucosyltransferase,chr12:38710380-38717784:+	DMS53_LUNG	0.02	1	0.0493	TRUE	0	0	0	1	0	FALSE	ACH-000698
DMS53_LUNG	ABR--CDK14	3	0	ABR	40037	chr17:906884:-	CDK14	66182	chr7:90675212:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14	DMS53_LUNG	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	LTBP3--VPRBP	3	0	LTBP3	12002	chr11:65311946:-	VPRBP	27541	chr3:51475690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	LTBP3->Oncogene{Bushman},chr11:65306276-65326401:-,latent_transforming_growth_factor_beta_binding_protein_3,VPRBP->Vpr_(HIV-1)_binding_protein,chr3:51433298-51534010:-	DMS53_LUNG	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5185	chrM:8927:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS53_LUNG	1	1	0.037	FALSE	189	492	56	216	0	FALSE	ACH-000698
DMS53_LUNG	PTPRN2--SCN2A	2	3	PTPRN2	15088	chr7:157691365:-	SCN2A	48170	chr2:166198806:+	ONLY_REF_SPLICE	YES	86	14	0.05	0.26	0.0247	0.037	PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,SCN2A->chr2:166095912-166248818:+,sodium_voltage-gated_channel_alpha_subunit_2	DMS53_LUNG	0.05	0.26	0.0617	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	AP003900.6--RP11-435B5.4	2	1	AP003900.6	3299	chr21:11174002:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	6	1	0.33	0.75	0.0247	0.0123	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	DMS53_LUNG	0.33	0.75	0.037	TRUE	0	1	0	4	1	TRUE	ACH-000698
DMS53_LUNG	GALNT8--PRMT8	1	5	GALNT8	9736	chr12:4873213:+	PRMT8	27992	chr12:3662817:+	ONLY_REF_SPLICE	YES	288	126	0.02	0.05	0.0123	0.0617	{Klijn_CCL:Lung=1},GALNT8->chr12:4829507-4960277:+,polypeptide_N-acetylgalactosaminyltransferase_8,PRMT8->chr12:3490515-3703139:+,protein_arginine_methyltransferase_8	DMS53_LUNG	0.02	0.05	0.074	TRUE	0	0	0	1	0	FALSE	ACH-000698
DMS53_LUNG	NSUN6--NEBL	2	1	NSUN6	8196	chr10:18885137:-	NEBL	51405	chr10:21101869:-	ONLY_REF_SPLICE	YES	107	58	0.03	0.05	0.0247	0.0123	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},NSUN6->NOP2/Sun_RNA_methyltransferase_family_member_6,chr10:18834490-18940551:-,NEBL->chr10:21068902-21463116:-,nebulette	DMS53_LUNG	0.03	0.05	0.037	TRUE	0	0	0	1	0	FALSE	ACH-000698
DMS53_LUNG	RP11-114H23.1--RP11-114H23.2	1	5	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0123	0.0617	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	DMS53_LUNG	0.86	1	0.074	FALSE	81	155	12	160	0	FALSE	ACH-000698
DMS53_LUNG	RP11-120D5.1--MID1	1	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	0	7	1	0.46	0.0123	0.0617	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	DMS53_LUNG	0.46	1	0.074	FALSE	0	23	1	67	0	FALSE	ACH-000698
DMS53_LUNG	RP11-1L12.3--SLC5A12	2	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0.0123	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	DMS53_LUNG	1	1	0.037	TRUE	3	101	0	60	0	FALSE	ACH-000698
DMS53_LUNG	AGBL4--AGBL4-IT1	2	0	AGBL4	3399	chr1:50162985:-	AGBL4-IT1	30507	chr1:49840016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	NEIGHBORS_OVERLAP:-:-:[97884],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,AGBL4-IT1->AGBL4_intronic_transcript_1,chr1:49839873-49937757:-	DMS53_LUNG	1	1	0.0247	FALSE	75	131	5	14	0	FALSE	ACH-000698
DMS53_LUNG	BCLAF1--ZNF330	2	0	BCLAF1	1139	chr6:136610851:-	ZNF330	29086	chr4:142150725:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	BCLAF1->BCL2_associated_transcription_factor_1,chr6:136578001-136610989:-,ZNF330->chr4:142142041-142155851:+,zinc_finger_protein_330	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	CACNA2D1--BAZ2B	2	0	CACNA2D1	4816	chr7:81964451:-	BAZ2B	66967	chr2:160295723:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	CACNA2D1->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_1,chr7:81575760-82073114:-,BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	CDKL2--ZNF138	2	0	CDKL2	2872	chr4:76551005:-	ZNF138	23726	chr7:64291829:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	CDKL2->chr4:76503215-76555900:-,cyclin_dependent_kinase_like_2,ZNF138->chr7:64254766-64294054:+,zinc_finger_protein_138	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	P4HTM--EEF1B2	2	0	P4HTM	2029	chr3:49028347:+	EEF1B2	18916	chr2:207027213:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	P4HTM->chr3:49027319-49044587:+,prolyl_4-hydroxylase,_transmembrane,EEF1B2->chr2:207024309-207027652:+,eukaryotic_translation_elongation_factor_1_beta_2	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	POLR3E--C9orf3	2	0	POLR3E	14659	chr16:22334252:+	C9orf3	64401	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	POLR3E->chr16:22308730-22346424:+,polymerase_(RNA)_III_subunit_E,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	RP11-1379J22.5--AIMP2	2	0	RP11-1379J22.5	1720	chr5:179085482:+	AIMP2	11127	chr7:6057445:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	RP11-1379J22.5->chr5:179084763-179091433:+,AIMP2->aminoacyl_tRNA_synthetase_complex-interacting_multifunctional_protein_2,chr7:6048876-6063465:+	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	RP11-727A23.5--LARP4	2	0	RP11-727A23.5	3740	chr11:82902097:-	LARP4	26132	chr12:50854918:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	RP11-727A23.5->chr11:82895533-82904836:-,LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	TMTC1--KLHL42	2	0	TMTC1	2310	chr12:29936383:-	KLHL42	45477	chr12:27944641:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	TMTC1->chr12:29653773-29937692:-,transmembrane_and_tetratricopeptide_repeat_containing_1,KLHL42->chr12:27932953-27955973:+,kelch_like_family_member_42	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	UACA--CCDC91	2	0	UACA	5892	chr15:70987356:-	CCDC91	48817	chr12:28458582:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	UACA->chr15:70946893-71055932:-,uveal_autoantigen_with_coiled-coil_domains_and_ankyrin_repeats,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	ZNF791--HTT	2	0	ZNF791	4345	chr19:12735524:+	HTT	43820	chr4:3174047:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	ZNF791->chr19:12721732-12742735:+,zinc_finger_protein_791,HTT->chr4:3076408-3245676:+,huntingtin	DMS53_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	CPNE8--TRIM3	1	3	CPNE8	13645	chr12:39124085:-	TRIM3	37233	chr11:6479526:-	ONLY_REF_SPLICE	NO	42	62	0.09	0.06	0.0123	0.037	CPNE8->chr12:39040624-39301232:-,copine_8,TRIM3->chr11:6469843-6495689:-,tripartite_motif_containing_3	DMS53_LUNG	0.06	0.09	0.0493	TRUE	0	0	0	1	0	FALSE	ACH-000698
DMS53_LUNG	GPHN--PLEKHH1	1	3	GPHN	9718	chr14:67291284:+	PLEKHH1	39573	chr14:68008551:+	ONLY_REF_SPLICE	YES	19	0	0.17	1	0.0123	0.037	GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,PLEKHH1->chr14:68000018-68056329:+,pleckstrin_homology,_MyTH4_and_FERM_domain_containing_H1	DMS53_LUNG	0.17	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0.037	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DMS53_LUNG	1	1	0.0493	FALSE	93	270	15	244	0	FALSE	ACH-000698
DMS53_LUNG	MNAT1--CTD-2277K2.1	1	2	MNAT1	1210	chr14:61201669:+	CTD-2277K2.1	19740	chr14:62436850:+	ONLY_REF_SPLICE	YES	123	0	0.02	1	0.0123	0.0247	MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+,CTD-2277K2.1->chr14:62278692-62437037:+	DMS53_LUNG	0.02	1	0.037	TRUE	0	0	0	1	0	FALSE	ACH-000698
DMS53_LUNG	TAS1R3--SCNN1D	1	2	TAS1R3	2493	chr1:1268186:+	SCNN1D	15824	chr1:1226017:+	ONLY_REF_SPLICE	YES	5	1	0.38	0.75	0.0123	0.0247	LOCAL_REARRANGEMENT:+:[39285],TAS1R3->chr1:1266694-1270686:+,taste_1_receptor_member_3,SCNN1D->chr1:1215816-1227409:+,sodium_channel_epithelial_1_delta_subunit	DMS53_LUNG	0.38	0.75	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	BCL9L--DOCK1	1	1	BCL9L	7003	chr11:118778192:-	DOCK1	62948	chr10:129201319:+	ONLY_REF_SPLICE	NO	35	39	0.05	0.05	0.0123	0.0123	BCL9L->B-cell_CLL/lymphoma_9-like,chr11:118764584-118796317:-,DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1	DMS53_LUNG	0.05	0.05	0.0246	TRUE	0	0	0	1	0	FALSE	ACH-000698
DMS53_LUNG	C9orf3--HNRNPK	1	1	C9orf3	32568	chr9:97823092:+	HNRNPK	42773	chr9:86593367:-	ONLY_REF_SPLICE	YES	272	421	0.01	0	0.0123	0.0123	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,HNRNPK->Oncogene{Bushman},chr9:86582998-86595569:-,heterogeneous_nuclear_ribonucleoprotein_K	DMS53_LUNG	0	0.01	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000698
DMS53_LUNG	FGF14-IT1--FGF14	1	1	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0.0123	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	DMS53_LUNG	1	1	0.0246	TRUE	71	201	23	28	0	FALSE	ACH-000698
DMS53_LUNG	FGFR1OP2--CCDC91	1	1	FGFR1OP2	1328	chr12:27091643:+	CCDC91	31359	chr12:28458582:+	ONLY_REF_SPLICE	YES	224	179	0.01	0.01	0.0123	0.0123	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Putamen_(basal_ganglia)=1,Stomach=1},FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	DMS53_LUNG	0.01	0.01	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000698
DMS53_LUNG	GDAP1--RP11-758M4.1	1	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	86	0	0.02	1	0.0123	0.0123	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	DMS53_LUNG	0.02	1	0.0246	TRUE	7	28	0	43	0	FALSE	ACH-000698
DMS53_LUNG	IGSF3--ADIPOR2	1	1	IGSF3	2470	chr1:117208906:-	ADIPOR2	27810	chr12:1863424:+	ONLY_REF_SPLICE	YES	16	52	0.11	0.04	0.0123	0.0123	IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	DMS53_LUNG	0.04	0.11	0.0246	TRUE	0	0	0	1	0	FALSE	ACH-000698
DMS53_LUNG	KMT2E--LINC01004	1	1	KMT2E	18391	chr7:104731761:+	LINC01004	36487	chr7:104594353:-	ONLY_REF_SPLICE	YES	89	0	0.02	1	0.0123	0.0123	LOCAL_INVERSION:+:-:[1135],KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,LINC01004->chr7:104590762-104653491:-,long_intergenic_non-protein_coding_RNA_1004	DMS53_LUNG	0.02	1	0.0246	TRUE	0	0	0	1	0	FALSE	ACH-000698
DMS53_LUNG	NEGR1--PTGER3	1	1	NEGR1	4961	chr1:72241855:-	PTGER3	38434	chr1:71419472:-	ONLY_REF_SPLICE	YES	47	3	0.04	0.4	0.0123	0.0123	NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1,PTGER3->chr1:71318036-71513491:-,prostaglandin_E_receptor_3	DMS53_LUNG	0.04	0.4	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000698
DMS53_LUNG	PCGF3--GAK	1	1	PCGF3	1223	chr4:699759:+	GAK	27552	chr4:898567:-	ONLY_REF_SPLICE	YES	94	403	0.02	0	0.0123	0.0123	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1},LOCAL_INVERSION:+:-:[78636],PCGF3->chr4:699537-764428:+,polycomb_group_ring_finger_3,GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase	DMS53_LUNG	0	0.02	0.0246	FALSE	0	1	0	2	0	FALSE	ACH-000698
DMS53_LUNG	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	NO	0	23	1	0.08	0.0123	0.0123	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DMS53_LUNG	0.08	1	0.0246	TRUE	465	1949	224	605	0	FALSE	ACH-000698
DMS53_LUNG	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0123	0.0123	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DMS53_LUNG	0.67	1	0.0246	TRUE	62	24	1	171	0	FALSE	ACH-000698
DMS53_LUNG	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	70	0	0.03	1	0.0123	0.0123	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	DMS53_LUNG	0.03	1	0.0246	FALSE	272	151	14	158	0	FALSE	ACH-000698
DMS53_LUNG	XPR1--CEP350	1	1	XPR1	7223	chr1:180780624:+	CEP350	32185	chr1:179965688:+	ONLY_REF_SPLICE	YES	163	46	0.01	0.04	0.0123	0.0123	XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,CEP350->centrosomal_protein_350,chr1:179923873-180084015:+	DMS53_LUNG	0.01	0.04	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000698
NCIH2066_LUNG	LDLR--SMARCA4	632	631	LDLR	13239	chr19:11224438:+	SMARCA4	64754	chr19:11168934:+	ONLY_REF_SPLICE	YES	46	223	0.96	0.85	7.208	7.1966	LOCAL_REARRANGEMENT:+:[23967],LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	NCIH2066_LUNG	0.85	0.96	14.4046	TRUE	0	2	0	2	0	TRUE	ACH-000727
NCIH2066_LUNG	LDLR--SMARCA4	589	631	LDLR	13239	chr19:11224438:+	SMARCA4	64751	chr19:11168931:+	ONLY_REF_SPLICE	YES	46	223	0.96	0.85	6.7176	7.1966	LOCAL_REARRANGEMENT:+:[23967],LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	NCIH2066_LUNG	0.85	0.96	13.9142	TRUE	0	2	0	2	0	TRUE	ACH-000727
NCIH2066_LUNG	FGFR2--COL14A1	142	84	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	2	3	0.99	0.99	1.6195	0.958	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH2066_LUNG	0.99	0.99	2.5775	TRUE	0	0	0	32	0	FALSE	ACH-000727
NCIH2066_LUNG	TLK1--PPM1F	123	81	TLK1	2781	chr2:172016800:-	PPM1F	45646	chr22:22288598:-	ONLY_REF_SPLICE	YES	37	112	0.85	0.65	1.4028	0.9238	TLK1->chr2:171847333-172087824:-,tousled_like_kinase_1,PPM1F->chr22:22273793-22307209:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1F	NCIH2066_LUNG	0.65	0.85	2.3266	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	TIMM23B--LINC00843	48	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.97	0.5474	0.2053	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2066_LUNG	0.97	1	0.7527	TRUE	508	994	45	981	0	FALSE	ACH-000727
NCIH2066_LUNG	MFNG--CARD10	45	29	MFNG	5905	chr22:37875383:-	CARD10	20964	chr22:37906428:-	ONLY_REF_SPLICE	YES	5	26	0.94	0.74	0.5132	0.3307	LOCAL_REARRANGEMENT:-:[3961],MFNG->MFNG_O-fucosylpeptide_3-beta-N-acetylglucosaminyltransferase,chr22:37865101-37882439:-,CARD10->caspase_recruitment_domain_family_member_10,chr22:37886400-37915549:-	NCIH2066_LUNG	0.74	0.94	0.8439	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	PAN3--PRSS53	39	14	PAN3	7152	chr13:28794515:+	PRSS53	30421	chr16:31097812:-	ONLY_REF_SPLICE	YES	14	4	0.79	0.93	0.4448	0.1597	PAN3->PAN3_poly(A)_specific_ribonuclease_subunit,chr13:28712643-28869475:+,PRSS53->chr16:31094746-31100949:-,protease,_serine_53	NCIH2066_LUNG	0.79	0.93	0.6045	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	TIMM23--RP11-464F9.1	39	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	121	5	0.25	0.89	0.4448	0.0228	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2066_LUNG	0.25	0.89	0.4676	TRUE	519	3926	326	965	0	FALSE	ACH-000727
NCIH2066_LUNG	FLOT1--LINC00243	28	13	FLOT1	1207	chr6:30710304:-	LINC00243	14145	chr6:30766549:-	ONLY_REF_SPLICE	YES	99	0	0.29	1	0.3193	0.1483	LOCAL_REARRANGEMENT:-:[55921],FLOT1->chr6:30695486-30710510:-,flotillin_1,LINC00243->chr6:30766431-30798436:-,long_intergenic_non-protein_coding_RNA_243	NCIH2066_LUNG	0.29	1	0.4676	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	SSH1--SVOP	25	14	SSH1	23965	chr12:109179276:-	SVOP	41419	chr12:109316573:-	INCL_NON_REF_SPLICE	YES	45	41	0.46	0.49	0.2851	0.1597	LOCAL_REARRANGEMENT:-:[53292],SSH1->chr12:109176466-109251366:-,slingshot_protein_phosphatase_1,SVOP->SV2_related_protein,chr12:109304658-109459045:-	NCIH2066_LUNG	0.46	0.49	0.4448	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	RP11-680G10.1--GSE1	26	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	9	1	0.8	0.2965	0.1026	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2066_LUNG	0.8	1	0.3991	TRUE	465	1949	224	605	0	FALSE	ACH-000727
NCIH2066_LUNG	ZNF571--AHSP	19	18	ZNF571	3950	chr19:38074872:-	AHSP	14245	chr16:31539457:+	ONLY_REF_SPLICE	YES	7	0	0.84	1	0.2167	0.2053	ZNF571->chr19:38045684-38085673:-,zinc_finger_protein_571,AHSP->alpha_hemoglobin_stabilizing_protein,chr16:31539185-31540124:+	NCIH2066_LUNG	0.84	1	0.422	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	AC009065.3--ABCA3	20	7	AC009065.3	1038	chr16:2255100:-	ABCA3	19067	chr16:2347540:-	INCL_NON_REF_SPLICE	YES	0	92	1	0.23	0.2281	0.0798	LOCAL_REARRANGEMENT:-:[70745],AC009065.3->chr16:2255031-2255137:-,ABCA3->ATP_binding_cassette_subfamily_A_member_3,Oncogene{Bushman},chr16:2325882-2390747:-	NCIH2066_LUNG	0.23	1	0.3079	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	RYR2--BRINP3	14	25	RYR2	35874	chr1:237732619:+	BRINP3	139093	chr1:190130020:-	ONLY_REF_SPLICE	YES	2	1	0.95	0.97	0.1597	0.2851	RYR2->chr1:237205505-237997288:+,ryanodine_receptor_2,BRINP3->BMP/retinoic_acid_inducible_neural_specific_3,chr1:190066792-190446759:-	NCIH2066_LUNG	0.95	0.97	0.4448	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	RP11-6N13.1--CTD-2374C24.1	17	7	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1939	0.0798	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH2066_LUNG	1	1	0.2737	TRUE	5	4	0	46	0	FALSE	ACH-000727
NCIH2066_LUNG	RP11-680G10.1--GSE1	15	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.89	0.1711	0.1141	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2066_LUNG	0.89	1	0.2852	TRUE	458	1351	185	561	0	FALSE	ACH-000727
NCIH2066_LUNG	STK4--YWHAB	15	10	STK4	14482	chr20:43629994:+	YWHAB	28745	chr20:43530172:+	ONLY_REF_SPLICE	YES	33	198	0.43	0.11	0.1711	0.1141	GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[57942],STK4->Oncogene{Bushman},chr20:43595115-43708600:+,serine/threonine_kinase_4,YWHAB->chr20:43514317-43537173:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_beta	NCIH2066_LUNG	0.11	0.43	0.2852	TRUE	0	0	0	2	0	TRUE	ACH-000727
NCIH2066_LUNG	ADCY1--HECW1	15	9	ADCY1	4312	chr7:45650096:+	HECW1	72271	chr7:43580762:+	ONLY_REF_SPLICE	YES	78	0	0.24	1	0.1711	0.1026	ADCY1->adenylate_cyclase_1_(brain),chr7:45613739-45762715:+,HECW1->HECT,_C2_and_WW_domain_containing_E3_ubiquitin_protein_ligase_1,chr7:43152198-43605600:+	NCIH2066_LUNG	0.24	1	0.2737	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	PIAS1--DPP6	14	11	PIAS1	16286	chr15:68468992:+	DPP6	34894	chr7:154263927:+	ONLY_REF_SPLICE	YES	20	0	0.56	1	0.1597	0.1255	PIAS1->chr15:68346517-68483096:+,protein_inhibitor_of_activated_STAT_1,DPP6->chr7:153584182-154685995:+,dipeptidyl_peptidase_like_6	NCIH2066_LUNG	0.56	1	0.2852	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	TATDN1--DEPTOR	14	7	TATDN1	8556	chr8:125527987:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	82	6	0.2	0.78	0.1597	0.0798	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH2066_LUNG	0.2	0.78	0.2395	TRUE	0	0	0	6	0	TRUE	ACH-000727
NCIH2066_LUNG	PAN3--PRSS53	9	18	PAN3	8292	chr13:28813833:+	PRSS53	30421	chr16:31097812:-	ONLY_REF_SPLICE	YES	16	4	0.63	0.87	0.1026	0.2053	PAN3->PAN3_poly(A)_specific_ribonuclease_subunit,chr13:28712643-28869475:+,PRSS53->chr16:31094746-31100949:-,protease,_serine_53	NCIH2066_LUNG	0.63	0.87	0.3079	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	CDC16--RP11-435B5.4	12	5	CDC16	13459	chr13:115024873:+	RP11-435B5.4	23941	chr1:143465438:-	ONLY_REF_SPLICE	YES	46	0	0.27	1	0.1369	0.057	CDC16->cell_division_cycle_16,chr13:115000362-115038198:+,RP11-435B5.4->chr1:143354963-143467632:-	NCIH2066_LUNG	0.27	1	0.1939	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	C15orf57--CBX3	9	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	42	8	0.33	0.72	0.1026	0.1369	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2066_LUNG	0.33	0.72	0.2395	TRUE	267	562	48	632	0	FALSE	ACH-000727
NCIH2066_LUNG	PLXDC1--TAF13	12	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1369	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH2066_LUNG	1	1	0.1369	TRUE	7	10	0	216	0	FALSE	ACH-000727
NCIH2066_LUNG	KIF1A--C2orf54	11	1	KIF1A	1187	chr2:241759539:-	C2orf54	58750	chr2:241831180:-	ONLY_REF_SPLICE	YES	0	99	1	0.11	0.1255	0.0114	LOCAL_REARRANGEMENT:-:[65740],KIF1A->chr2:241653181-241759725:-,kinesin_family_member_1A,C2orf54->chr2:241825465-241836306:-,chromosome_2_open_reading_frame_54	NCIH2066_LUNG	0.11	1	0.1369	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	AP003900.6--AC008132.1	9	5	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.1026	0.057	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH2066_LUNG	0.93	1	0.1596	TRUE	1	1	0	28	1	FALSE	ACH-000727
NCIH2066_LUNG	MT-ATP6--MT-ND2	10	1	MT-ATP6	1098	chrM:8624:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	7272	4939	0	0	0.1141	0.0114	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH2066_LUNG	0	0	0.1255	FALSE	177	96	13	17	0	FALSE	ACH-000727
NCIH2066_LUNG	TMEM50A--RHD	9	3	TMEM50A	7711	chr1:25683344:+	RHD	14717	chr1:25611064:+	ONLY_REF_SPLICE	YES	144	0	0.08	1	0.1026	0.0342	LOCAL_REARRANGEMENT:+:[7472],TMEM50A->chr1:25664408-25688852:+,transmembrane_protein_50A,RHD->Rh_blood_group_D_antigen,chr1:25598884-25656936:+	NCIH2066_LUNG	0.08	1	0.1368	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	BCLAF1--MAP7	9	0	BCLAF1	1139	chr6:136610851:-	MAP7	32142	chr6:136704919:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1026	0	LOCAL_REARRANGEMENT:-:[52886],BCLAF1->BCL2_associated_transcription_factor_1,chr6:136578001-136610989:-,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	NCIH2066_LUNG	1	1	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	ZNF571--AHSP	8	2	ZNF571	2764	chr19:38077569:-	AHSP	14245	chr16:31539457:+	ONLY_REF_SPLICE	YES	5	0	0.67	1	0.0912	0.0228	ZNF571->chr19:38045684-38085673:-,zinc_finger_protein_571,AHSP->alpha_hemoglobin_stabilizing_protein,chr16:31539185-31540124:+	NCIH2066_LUNG	0.67	1	0.114	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	MT-ATP6--MT-RNR2	7	5	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	8742	5714	0	0	0.0798	0.057	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2066_LUNG	0	0	0.1368	FALSE	63	17	1	58	0	FALSE	ACH-000727
NCIH2066_LUNG	G2E3--RP11-351M16.3	7	2	G2E3	14582	chr14:31067805:+	RP11-351M16.3	31079	chr10:28725150:-	ONLY_REF_SPLICE	YES	82	0	0.1	1	0.0798	0.0228	G2E3->G2/M-phase_specific_E3_ubiquitin_protein_ligase,chr14:31028329-31089269:+,RP11-351M16.3->chr10:28721937-28784742:-	NCIH2066_LUNG	0.1	1	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	MT-ND4--MT-ATP8	7	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10043	3	0	0.75	0.0798	0.0228	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2066_LUNG	0	0.75	0.1026	FALSE	230	198	14	283	0	FALSE	ACH-000727
NCIH2066_LUNG	MTMR3--HSCB	7	2	MTMR3	5311	chr22:30375041:+	HSCB	37458	chr22:29147229:+	ONLY_REF_SPLICE	YES	52	30	0.15	0.23	0.0798	0.0228	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,HSCB->HscB_mitochondrial_iron-sulfur_cluster_co-chaperone,chr22:29138019-29153503:+	NCIH2066_LUNG	0.15	0.23	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	RP11-476K15.1--CTD-2015H3.2	6	5	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	13	0	0.46	1	0.0684	0.057	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCIH2066_LUNG	0.46	1	0.1254	FALSE	0	46	0	73	0	FALSE	ACH-000727
NCIH2066_LUNG	RP11-476K15.1--CTD-2015H3.2	6	5	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	13	0	0.46	1	0.0684	0.057	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCIH2066_LUNG	0.46	1	0.1254	FALSE	0	46	0	73	0	FALSE	ACH-000727
NCIH2066_LUNG	RP11-681L8.1--STPG2	7	0	RP11-681L8.1	2417	chr4:98493799:-	STPG2	22333	chr4:98480268:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0798	0	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH2066_LUNG	1	1	0.0798	TRUE	0	6	0	7	6	TRUE	ACH-000727
NCIH2066_LUNG	RP11-155G15.2--RP11-1E3.1	6	3	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0684	0.0342	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH2066_LUNG	1	1	0.1026	FALSE	46	201	11	112	0	FALSE	ACH-000727
NCIH2066_LUNG	CALM3--MT-ND4L	4	10	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1546	0	0.01	1	0.0456	0.1141	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2066_LUNG	0.01	1	0.1597	FALSE	1	1	0	107	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ND4--MT-ATP8	3	14	MT-ND4	1964	chrM:11723:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	10421	0	0	1	0.0342	0.1597	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2066_LUNG	0	1	0.1939	FALSE	231	217	16	283	0	FALSE	ACH-000727
NCIH2066_LUNG	ADCY1--HECW1	3	13	ADCY1	5424	chr7:45662342:+	HECW1	72271	chr7:43580762:+	ONLY_REF_SPLICE	YES	75	0	0.18	1	0.0342	0.1483	ADCY1->adenylate_cyclase_1_(brain),chr7:45613739-45762715:+,HECW1->HECT,_C2_and_WW_domain_containing_E3_ubiquitin_protein_ligase_1,chr7:43152198-43605600:+	NCIH2066_LUNG	0.18	1	0.1825	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	MT-ATP6--MT-RNR2	5	5	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	9175	5990	0	0	0.057	0.057	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2066_LUNG	0	0	0.114	FALSE	63	17	1	58	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ND4--MT-ATP8	3	13	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10901	27	0	0.37	0.0342	0.1483	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2066_LUNG	0	0.37	0.1825	FALSE	231	217	16	283	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ND4--MT-ATP8	3	13	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	11748	3	0	0.84	0.0342	0.1483	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2066_LUNG	0	0.84	0.1825	FALSE	231	217	16	283	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ND4--MT-ATP8	6	1	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	11255	1531	0	0	0.0684	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2066_LUNG	0	0	0.0798	FALSE	231	205	14	283	0	FALSE	ACH-000727
NCIH2066_LUNG	RP11-123O10.4--GRIP1	6	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0684	0.0114	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2066_LUNG	1	1	0.0798	FALSE	416	2512	207	587	0	FALSE	ACH-000727
NCIH2066_LUNG	FTL--MT-CO1	6	0	FTL	1122	chr19:49468679:+	MT-CO1	6221	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0684	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2066_LUNG	1	1	0.0684	FALSE	0	7	0	14	0	FALSE	ACH-000727
NCIH2066_LUNG	LINC01036--LCE5A	5	3	LINC01036	1105	chr1:187062078:+	LCE5A	8529	chr1:152483990:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0.0342	LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LCE5A->chr1:152483320-152484653:+,late_cornified_envelope_5A	NCIH2066_LUNG	1	1	0.0912	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	MT-ATP6--MT-ND2	5	3	MT-ATP6	1158	chrM:8684:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	9903	4939	0	0	0.057	0.0342	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH2066_LUNG	0	0	0.0912	FALSE	177	96	13	17	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ND4--MT-ATP8	4	6	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	10724	1552	0	0.01	0.0456	0.0684	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2066_LUNG	0	0.01	0.114	FALSE	231	217	16	283	0	FALSE	ACH-000727
NCIH2066_LUNG	FTL--MT-CO1	5	0	FTL	1134	chr19:49468691:+	MT-CO1	6232	chrM:6557:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2066_LUNG	1	1	0.057	FALSE	0	7	0	14	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ATP6--MT-CO1	5	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2066_LUNG	1	1	0.057	FALSE	183	104	9	328	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ND4--MT-ND4L	3	8	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	5	0	0.69	1	0.0342	0.0912	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2066_LUNG	0.69	1	0.1254	FALSE	344	821	44	306	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ND4--MT-ND4L	4	4	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	27	0	0.23	1	0.0456	0.0456	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2066_LUNG	0.23	1	0.0912	FALSE	344	826	44	306	0	FALSE	ACH-000727
NCIH2066_LUNG	TATDN1--DEPTOR	5	0	TATDN1	1434	chr8:125551266:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH2066_LUNG	1	1	0.057	TRUE	0	0	0	2	0	TRUE	ACH-000727
NCIH2066_LUNG	CTD-2008L17.1--RP11-456O19.2	4	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0456	0.0228	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH2066_LUNG	1	1	0.0684	FALSE	33	240	4	98	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ATP6--MT-RNR2	4	2	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	7917	0	0	1	0.0456	0.0228	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2066_LUNG	0	1	0.0684	FALSE	63	17	1	58	0	FALSE	ACH-000727
NCIH2066_LUNG	CYCS--C7orf31	4	1	CYCS	2657	chr7:25163324:-	C7orf31	14733	chr7:25194811:-	INCL_NON_REF_SPLICE	YES	852	31	0.01	0.14	0.0456	0.0114	LOCAL_REARRANGEMENT:-:[9336],CYCS->chr7:25159710-25164980:-,cytochrome_c,_somatic,C7orf31->chr7:25174316-25219975:-,chromosome_7_open_reading_frame_31	NCIH2066_LUNG	0.01	0.14	0.057	FALSE	0	0	0	1	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ATP6--MT-CO1	3	5	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2515	18236	0	0	0.0342	0.057	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2066_LUNG	0	0	0.0912	FALSE	183	104	9	328	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	7682	0	0	1	0.0456	0.0114	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2066_LUNG	0	1	0.057	FALSE	63	17	1	58	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	12691	0	0	1	0.0342	0.057	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2066_LUNG	0	1	0.0912	FALSE	231	217	16	283	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	12604	0	0	1	0.0342	0.057	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2066_LUNG	0	1	0.0912	FALSE	231	217	16	283	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-CO3--MT-ATP8	4	0	MT-CO3	1083	chrM:9289:+	MT-ATP8	4826	chrM:8407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2066_LUNG	1	1	0.0456	FALSE	16	100	1	11	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ND4--MT-ND4L	3	4	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	63	0	0.1	1	0.0342	0.0456	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2066_LUNG	0.1	1	0.0798	FALSE	344	827	44	306	0	FALSE	ACH-000727
NCIH2066_LUNG	SPAG1--POLR2K	3	4	SPAG1	17961	chr8:101245765:+	POLR2K	26625	chr8:101163575:+	ONLY_REF_SPLICE	YES	32	4	0.18	0.64	0.0342	0.0456	LOCAL_REARRANGEMENT:+:[3904],SPAG1->chr8:101170134-101271506:+,sperm_associated_antigen_1,POLR2K->chr8:101162812-101166230:+,polymerase_(RNA)_II_subunit_K	NCIH2066_LUNG	0.18	0.64	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	EIF2AK2--PRKD3	3	3	EIF2AK2	17642	chr2:37334401:-	PRKD3	32960	chr2:37520414:-	INCL_NON_REF_SPLICE	YES	24	71	0.2	0.08	0.0342	0.0342	PROTCLUST,{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:-:[93437],EIF2AK2->Oncogene{Bushman},chr2:37326353-37384208:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_2,PRKD3->chr2:37477645-37551951:-,protein_kinase_D3	NCIH2066_LUNG	0.08	0.2	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	MT-ATP6--MT-ND2	3	3	MT-ATP6	1153	chrM:8679:+	MT-ND2	5576	chrM:5364:+	INCL_NON_REF_SPLICE	YES	9423	2521	0	0	0.0342	0.0342	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH2066_LUNG	0	0	0.0684	FALSE	177	96	13	17	0	FALSE	ACH-000727
NCIH2066_LUNG	TATDN1--DEPTOR	2	7	TATDN1	8415	chr8:125528128:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	86	6	0.09	0.6	0.0228	0.0798	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH2066_LUNG	0.09	0.6	0.1026	TRUE	0	0	0	6	0	TRUE	ACH-000727
NCIH2066_LUNG	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	7965	5951	0	0	0.0342	0.0228	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2066_LUNG	0	0	0.057	FALSE	63	17	1	58	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	10337	1588	0	0	0.0342	0.0228	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2066_LUNG	0	0	0.057	FALSE	231	204	14	283	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	11278	765	0	0.01	0.0342	0.0228	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2066_LUNG	0	0.01	0.057	FALSE	231	205	14	283	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	9915	3	0	0.62	0.0342	0.0228	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2066_LUNG	0	0.62	0.057	FALSE	230	193	14	283	0	FALSE	ACH-000727
NCIH2066_LUNG	RP11-692D12.1--RYR2	3	2	RP11-692D12.1	1200	chr4:74125125:+	RYR2	85563	chr1:237868513:+	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0342	0.0228	RP11-692D12.1->chr4:74124926-74183670:+,RYR2->chr1:237205505-237997288:+,ryanodine_receptor_2	NCIH2066_LUNG	0.56	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	SYNE1--ESR1	3	2	SYNE1	125531	chr6:152560668:-	ESR1	183686	chr6:152128978:+	ONLY_REF_SPLICE	NO	11	0	0.31	1	0.0342	0.0228	NEIGHBORS_OVERLAP:-:+:[7935],SYNE1->Oncogene{Bushman},chr6:152442819-152958936:-,spectrin_repeat_containing_nuclear_envelope_protein_1,ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1	NCIH2066_LUNG	0.31	1	0.057	FALSE	0	0	0	1	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ATP6--MT-ND2	3	1	MT-ATP6	1107	chrM:8633:+	MT-ND2	5117	chrM:4905:+	INCL_NON_REF_SPLICE	YES	7833	11741	0	0	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH2066_LUNG	0	0	0.0456	FALSE	177	96	13	17	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	7004	0	0	1	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2066_LUNG	0	1	0.0456	FALSE	63	17	1	58	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1100	chrM:8626:+	MT-RNR2	5246	chrM:2235:+	INCL_NON_REF_SPLICE	YES	7156	6264	0	0	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2066_LUNG	0	0	0.0456	FALSE	63	17	1	58	0	FALSE	ACH-000727
NCIH2066_LUNG	MT-CO3--MT-ATP8	3	1	MT-CO3	1140	chrM:9346:+	MT-ATP8	4859	chrM:8440:+	INCL_NON_REF_SPLICE	YES	3709	0	0	1	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2066_LUNG	0	1	0.0456	FALSE	16	100	1	11	0	FALSE	ACH-000727
NCIH2066_LUNG	CALM3--MT-ATP8	3	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2066_LUNG	1	1	0.0342	FALSE	12	0	0	26	0	FALSE	ACH-000727
NCIH2066_LUNG	ESR1--SYNE1	2	3	ESR1	12417	chr6:152201906:+	SYNE1	169766	chr6:152539538:-	ONLY_REF_SPLICE	YES	0	21	1	0.19	0.0228	0.0342	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},NEIGHBORS_OVERLAP:+:-:[7935],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,SYNE1->Oncogene{Bushman},chr6:152442819-152958936:-,spectrin_repeat_containing_nuclear_envelope_protein_1	NCIH2066_LUNG	0.19	1	0.057	FALSE	0	0	0	1	0	FALSE	ACH-000727
NCIH2066_LUNG	MYRIP--PLK1S1	2	3	MYRIP	3942	chr3:39942417:+	PLK1S1	28615	chr20:21112738:+	ONLY_REF_SPLICE	YES	1	22	0.83	0.19	0.0228	0.0342	MYRIP->chr3:39850405-40301812:+,myosin_VIIA_and_Rab_interacting_protein,PLK1S1->Oncogene{Bushman},chr20:21106624-21227260:+	NCIH2066_LUNG	0.19	0.83	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	RP11-6N13.1--CTD-2374C24.1	1	7	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0114	0.0798	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH2066_LUNG	1	1	0.0912	TRUE	5	12	0	42	0	FALSE	ACH-000727
NCIH2066_LUNG	PAN3--PRSS53	2	2	PAN3	4842	chr13:28752072:+	PRSS53	30421	chr16:31097812:-	ONLY_REF_SPLICE	YES	36	4	0.1	0.5	0.0228	0.0228	PAN3->PAN3_poly(A)_specific_ribonuclease_subunit,chr13:28712643-28869475:+,PRSS53->chr16:31094746-31100949:-,protease,_serine_53	NCIH2066_LUNG	0.1	0.5	0.0456	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	RP11-692D12.1--RYR2	2	2	RP11-692D12.1	2330	chr4:74135670:+	RYR2	85563	chr1:237868513:+	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0228	0.0228	RP11-692D12.1->chr4:74124926-74183670:+,RYR2->chr1:237205505-237997288:+,ryanodine_receptor_2	NCIH2066_LUNG	0.44	1	0.0456	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	TATDN1--DEPTOR	2	2	TATDN1	7195	chr8:125531059:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	102	6	0.04	0.4	0.0228	0.0228	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH2066_LUNG	0.04	0.4	0.0456	TRUE	0	0	0	2	0	TRUE	ACH-000727
NCIH2066_LUNG	ANO7--HDLBP	2	1	ANO7	20467	chr2:242157796:+	HDLBP	44590	chr2:242189395:-	ONLY_REF_SPLICE	YES	11	562	0.21	0.01	0.0228	0.0114	GTEx_FI:{Brain=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[1887],ANO7->anoctamin_7,chr2:242127924-242164792:+,HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein	NCIH2066_LUNG	0.01	0.21	0.0342	FALSE	0	0	0	2	0	FALSE	ACH-000727
NCIH2066_LUNG	GATS--PILRB	2	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	70	92	0.04	0.03	0.0228	0.0114	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	NCIH2066_LUNG	0.03	0.04	0.0342	TRUE	57	41	2	35	0	FALSE	ACH-000727
NCIH2066_LUNG	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0.0114	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2066_LUNG	1	1	0.0342	TRUE	62	24	1	171	0	FALSE	ACH-000727
NCIH2066_LUNG	ABCB9--A1CF	2	0	ABCB9	5243	chr12:123459262:-	A1CF	46056	chr10:52570936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	ABCB9->ATP_binding_cassette_subfamily_B_member_9,chr12:123405498-123466196:-,A1CF->APOBEC1_complementation_factor,chr10:52559169-52645435:-	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	ANKRD11--SESTD1	2	0	ANKRD11	21283	chr16:89354936:-	SESTD1	51017	chr2:179997153:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,SESTD1->SEC14_and_spectrin_domain_containing_1,chr2:179966419-180129517:-	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	CD2AP--ERICH1	2	0	CD2AP	1460	chr6:47445984:+	ERICH1	34102	chr8:624047:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	CD2AP->CD2-associated_protein,chr6:47445525-47594999:+,ERICH1->Oncogene{Bushman},chr8:564746-688106:-,glutamate_rich_1	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	DYNC1I1--PEG10	2	0	DYNC1I1	10897	chr7:95499310:+	PEG10	31134	chr7:94292646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	DYNC1I1->chr7:95401866-95739634:+,dynein_cytoplasmic_1_intermediate_chain_1,PEG10->Oncogene{Bushman},chr7:94285637-94299007:+,paternally_expressed_10	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	HNRNPA2B1--SKAP2	2	0	HNRNPA2B1	1958	chr7:26240192:-	SKAP2	23355	chr7:26883756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,SKAP2->chr7:26706681-27034858:-,src_kinase_associated_phosphoprotein_2	NCIH2066_LUNG	1	1	0.0228	TRUE	0	1	0	1	1	TRUE	ACH-000727
NCIH2066_LUNG	KMT2E--DNAJC2	2	0	KMT2E	7277	chr7:104704027:+	DNAJC2	39857	chr7:102968201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	PSMA1--FAM104B	2	0	PSMA1	2367	chr11:14632512:-	FAM104B	20747	chrX:55172744:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1,FAM104B->chrX:55169535-55187743:-,family_with_sequence_similarity_104_member_B	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	PTBP3--RAD23B	2	0	PTBP3	1198	chr9:115095750:-	RAD23B	35019	chr9:110087115:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,RAD23B->Oncogene{Bushman},RAD23_homolog_B,_nucleotide_excision_repair_protein,chr9:110045418-110094475:+	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	RFX6--ERP44	2	0	RFX6	16694	chr6:117245954:+	ERP44	36268	chr9:102747351:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	RFX6->chr6:117198375-117253326:+,regulatory_factor_X6,ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	RP11-435B5.4--AMACR	2	0	RP11-435B5.4	2843	chr1:143465380:-	AMACR	20941	chr5:34006004:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	RP11-435B5.4->chr1:143354963-143467632:-,AMACR->alpha-methylacyl-CoA_racemase,chr5:33986283-34008220:-	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	RP11-681L8.1--STPG2	2	0	RP11-681L8.1	3504	chr4:98313793:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH2066_LUNG	1	1	0.0228	TRUE	0	10	0	4	10	TRUE	ACH-000727
NCIH2066_LUNG	TMEM41A--THAP4	2	0	TMEM41A	2810	chr3:185214616:-	THAP4	29853	chr2:242524140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	TMEM41A->chr3:185194284-185216845:-,transmembrane_protein_41A,THAP4->THAP_domain_containing_4,chr2:242523820-242576864:-	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	TPX2--HM13	2	0	TPX2	11582	chr20:30366787:+	HM13	35658	chr20:30142549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	TTC13--ZKSCAN1	2	0	TTC13	25067	chr1:231044458:-	ZKSCAN1	33219	chr7:99621042:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	TTC13->chr1:231041989-231114621:-,tetratricopeptide_repeat_domain_13,ZKSCAN1->chr7:99613204-99639312:+,zinc_finger_with_KRAB_and_SCAN_domains_1	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	WWOX--RP11-319G9.5	2	0	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	NCIH2066_LUNG	1	1	0.0228	FALSE	33	33	2	19	0	FALSE	ACH-000727
NCIH2066_LUNG	ZNF571--AHSP	2	0	ZNF571	1032	chr19:38085642:-	AHSP	14245	chr16:31539457:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	ZNF571->chr19:38045684-38085673:-,zinc_finger_protein_571,AHSP->alpha_hemoglobin_stabilizing_protein,chr16:31539185-31540124:+	NCIH2066_LUNG	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	AP003900.6--AC008132.1	1	3	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	NO	1	7	0.8	0.36	0.0114	0.0342	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH2066_LUNG	0.36	0.8	0.0456	TRUE	0	0	0	13	0	TRUE	ACH-000727
NCIH2066_LUNG	RP11-6N13.1--CTD-2374C24.1	1	3	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	23469	chr5:104253599:-	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0114	0.0342	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH2066_LUNG	0.8	1	0.0456	TRUE	0	0	0	4	0	FALSE	ACH-000727
NCIH2066_LUNG	TLK1--MAPK1	1	2	TLK1	2781	chr2:172016800:-	MAPK1	39225	chr22:22162135:-	ONLY_REF_SPLICE	YES	37	35	0.07	0.08	0.0114	0.0228	PROTCLUST,TLK1->chr2:171847333-172087824:-,tousled_like_kinase_1,MAPK1->Oncogene{Bushman},chr22:22108789-22221970:-,mitogen-activated_protein_kinase_1	NCIH2066_LUNG	0.07	0.08	0.0342	TRUE	0	0	0	1	0	FALSE	ACH-000727
NCIH2066_LUNG	BRICD5--ABCA3	1	1	BRICD5	3398	chr16:2259554:-	ABCA3	21658	chr16:2347540:-	ONLY_REF_SPLICE	YES	12	92	0.14	0.02	0.0114	0.0114	LOCAL_REARRANGEMENT:-:[63931],BRICD5->BRICHOS_domain_containing_5,chr16:2259254-2261951:-,ABCA3->ATP_binding_cassette_subfamily_A_member_3,Oncogene{Bushman},chr16:2325882-2390747:-	NCIH2066_LUNG	0.02	0.14	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000727
NCIH2066_LUNG	C16orf58--ZNF571-AS1	1	1	C16orf58	2546	chr16:31519085:-	ZNF571-AS1	26027	chr19:38076240:+	ONLY_REF_SPLICE	YES	33	2	0.06	0.5	0.0114	0.0114	C16orf58->chr16:31500792-31520630:-,chromosome_16_open_reading_frame_58,ZNF571-AS1->ZNF571_antisense_RNA_1,chr19:38039816-38078249:+	NCIH2066_LUNG	0.06	0.5	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	MYO10--EXO1	1	1	MYO10	20053	chr5:16758227:-	EXO1	66152	chr1:242042051:+	ONLY_REF_SPLICE	YES	71	46	0.03	0.04	0.0114	0.0114	MYO10->chr5:16665395-16936372:-,myosin_X,EXO1->chr1:242011269-242058450:+,exonuclease_1	NCIH2066_LUNG	0.03	0.04	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000727
NCIH2066_LUNG	MYRIP--PLK1S1	1	1	MYRIP	3942	chr3:39942417:+	PLK1S1	31081	chr20:21126206:+	ONLY_REF_SPLICE	YES	1	21	0.67	0.09	0.0114	0.0114	MYRIP->chr3:39850405-40301812:+,myosin_VIIA_and_Rab_interacting_protein,PLK1S1->Oncogene{Bushman},chr20:21106624-21227260:+	NCIH2066_LUNG	0.09	0.67	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000727
NCIH2066_LUNG	RP11-108K3.1--RP11-108K3.2	1	1	RP11-108K3.1	1194	chr15:51329878:+	RP11-108K3.2	8519	chr15:51613806:+	ONLY_REF_SPLICE	YES	1	2	0.67	0.5	0.0114	0.0114	NEIGHBORS[21929],RP11-108K3.1->chr15:51329685-51586109:+,RP11-108K3.2->chr15:51608038-51614193:+	NCIH2066_LUNG	0.5	0.67	0.0228	FALSE	0	5	0	3	0	FALSE	ACH-000727
NCIH2066_LUNG	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	2	1	0.5	0.67	0.0114	0.0114	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2066_LUNG	0.5	0.67	0.0228	FALSE	16	356	14	466	0	FALSE	ACH-000727
NCIH2066_LUNG	RP11-634B7.4--TRIM58	1	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0114	0.0114	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	NCIH2066_LUNG	0.67	1	0.0228	TRUE	158	633	76	73	0	FALSE	ACH-000727
NCIH2066_LUNG	RPA3-AS1--PHF14	1	1	RPA3-AS1	3140	chr7:7713084:+	PHF14	42747	chr7:11150977:+	ONLY_REF_SPLICE	YES	41	24	0.05	0.08	0.0114	0.0114	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Hypothalamus=1,Adipose_-_Subcutaneous=1},RPA3-AS1->chr7:7680342-8043689:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH2066_LUNG	0.05	0.08	0.0228	TRUE	1	7	0	2	0	FALSE	ACH-000727
NCIH2066_LUNG	WDR41--TBCA	1	1	WDR41	7042	chr5:76785282:-	TBCA	32720	chr5:77004172:-	ONLY_REF_SPLICE	YES	79	229	0.02	0.01	0.0114	0.0114	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},LOCAL_REARRANGEMENT:-:[70555],WDR41->WD_repeat_domain_41,chr5:76721795-76916436:-,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	NCIH2066_LUNG	0.01	0.02	0.0228	FALSE	1	1	0	3	0	FALSE	ACH-000727
NCIH2066_LUNG	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1868	35	0	0.05	0.0114	0.0114	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NCIH2066_LUNG	0	0.05	0.0228	FALSE	6	50	7	115	0	FALSE	ACH-000727
SNUC2A_LARGE_INTESTINE	TIMM23B--LINC00843	90	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.069	0.3326	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNUC2A_LARGE_INTESTINE	1	1	1.4016	TRUE	508	994	45	981	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	C1orf159--PRKCZ	63	37	C1orf159	7717	chr1:1025733:-	PRKCZ	42422	chr1:2100957:+	ONLY_REF_SPLICE	YES	48	138	0.68	0.42	0.7483	0.4395	C1orf159->chr1:1017198-1051741:-,chromosome_1_open_reading_frame_159,PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta	SNUC2A_LARGE_INTESTINE	0.42	0.68	1.1878	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	TIMM23--RP11-464F9.1	50	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	191	2	0.22	0.96	0.5939	0.0475	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNUC2A_LARGE_INTESTINE	0.22	0.96	0.6414	TRUE	519	3926	326	965	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	MT-TA--MT-TC	39	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4632	0.0594	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNUC2A_LARGE_INTESTINE	1	1	0.5226	FALSE	462	80	0	856	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-123O10.4--GRIP1	37	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4395	0.0713	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNUC2A_LARGE_INTESTINE	1	1	0.5108	FALSE	416	2512	207	587	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-392P7.6--APOLD1	33	2	RP11-392P7.6	1078	chr12:13080737:+	APOLD1	24118	chr12:12965195:+	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.392	0.0238	LOCAL_REARRANGEMENT:+:[97751],RP11-392P7.6->chr12:13080660-13137579:+,APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+	SNUC2A_LARGE_INTESTINE	0.97	1	0.4158	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	HRH1--PHAX	29	0	HRH1	9189	chr3:11303522:+	PHAX	20578	chr5:125961293:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3445	0	HRH1->chr3:11178779-11305243:+,histamine_receptor_H1,PHAX->chr5:125935960-125962944:+,phosphorylated_adaptor_for_RNA_export	SNUC2A_LARGE_INTESTINE	1	1	0.3445	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	TUBGCP6--MAPK12	25	14	TUBGCP6	16163	chr22:50656917:-	MAPK12	21960	chr22:50696730:-	ONLY_REF_SPLICE	YES	85	59	0.31	0.4	0.2969	0.1663	LOCAL_REARRANGEMENT:-:[458],TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6,MAPK12->Oncogene{Bushman},chr22:50683879-50700254:-,mitogen-activated_protein_kinase_12	SNUC2A_LARGE_INTESTINE	0.31	0.4	0.4632	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	OR51S1--TP53I11	28	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3326	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNUC2A_LARGE_INTESTINE	1	1	0.3326	TRUE	402	216	10	229	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	TUBGCP6--MAPK12	19	20	TUBGCP6	16372	chr22:50656708:-	MAPK12	21960	chr22:50696730:-	INCL_NON_REF_SPLICE	YES	39	59	0.5	0.4	0.2257	0.2376	LOCAL_REARRANGEMENT:-:[458],TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6,MAPK12->Oncogene{Bushman},chr22:50683879-50700254:-,mitogen-activated_protein_kinase_12	SNUC2A_LARGE_INTESTINE	0.4	0.5	0.4633	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	MT-ND6--MT-TE	20	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2376	0.0238	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNUC2A_LARGE_INTESTINE	1	1	0.2614	FALSE	499	1288	110	792	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-763B22.4--SEC22B	18	6	RP11-763B22.4	1056	chr1:148760559:+	SEC22B	9372	chr1:145109524:+	ONLY_REF_SPLICE	YES	0	332	1	0.07	0.2138	0.0713	GTEx_FI:{Brain=[count:9=pct:1.4],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},RP11-763B22.4->chr1:148760504-148761583:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SNUC2A_LARGE_INTESTINE	0.07	1	0.2851	TRUE	11	9	1	4	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	PTMA--PTMS	19	0	PTMA	6054	chr2:232576687:+	PTMS	13973	chr12:6879338:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2257	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	SNUC2A_LARGE_INTESTINE	1	1	0.2257	TRUE	0	0	0	16	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-6N13.1--CTD-2374C24.1	16	6	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.19	0.0713	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SNUC2A_LARGE_INTESTINE	0.92	1	0.2613	TRUE	5	4	0	46	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	MUC5B--MT-ATP6	13	7	MUC5B	37133	chr11:1282732:+	MT-ATP6	41208	chrM:8927:+	INCL_NON_REF_SPLICE	YES	689	8449	0.03	0	0.1544	0.0831	MUC5B->chr11:1244296-1283406:+,mucin_5B,_oligomeric_mucus/gel-forming,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNUC2A_LARGE_INTESTINE	0	0.03	0.2375	FALSE	2	0	0	6	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	MT-ND6--MT-TE	11	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.1307	0.1544	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNUC2A_LARGE_INTESTINE	0.92	1	0.2851	FALSE	499	1288	110	792	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-392P7.6--APOLD1	14	0	RP11-392P7.6	1078	chr12:13080737:+	APOLD1	25182	chr12:12966259:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1663	0	LOCAL_REARRANGEMENT:+:[97751],RP11-392P7.6->chr12:13080660-13137579:+,APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+	SNUC2A_LARGE_INTESTINE	1	1	0.1663	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	MT-TA--MT-TC	11	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1307	0.0594	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNUC2A_LARGE_INTESTINE	1	1	0.1901	FALSE	462	80	0	856	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	NRIP1--AF127936.7	11	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1307	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNUC2A_LARGE_INTESTINE	1	1	0.1307	FALSE	292	1546	117	613	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	MT-ND6--MT-TE	10	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1188	0.0356	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNUC2A_LARGE_INTESTINE	1	1	0.1544	FALSE	499	1288	110	792	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	MT-ND6--MT-TE	7	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0831	0.1307	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNUC2A_LARGE_INTESTINE	1	1	0.2138	FALSE	499	1288	110	792	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1069	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNUC2A_LARGE_INTESTINE	1	1	0.1069	TRUE	0	0	0	434	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	DOCK3--MAPKAPK3	8	0	DOCK3	2144	chr3:50816189:+	MAPKAPK3	62773	chr3:50677797:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.095	0	LOCAL_REARRANGEMENT:+:[25952],DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3,MAPKAPK3->chr3:50648951-50686720:+,mitogen-activated_protein_kinase-activated_protein_kinase_3	SNUC2A_LARGE_INTESTINE	1	1	0.095	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	DIS3L2--AC009950.2	6	0	DIS3L2	1521	chr2:232826475:+	AC009950.2	40263	chr2:231004784:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0713	0	DIS3L2->DIS3_like_3'-5'_exoribonuclease_2,chr2:232825955-233209060:+,AC009950.2->chr2:230990026-231038939:+	SNUC2A_LARGE_INTESTINE	1	1	0.0713	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0713	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNUC2A_LARGE_INTESTINE	1	1	0.0713	FALSE	13	9	0	364	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0713	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNUC2A_LARGE_INTESTINE	1	1	0.0713	FALSE	13	9	0	364	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0713	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNUC2A_LARGE_INTESTINE	1	1	0.0713	FALSE	183	104	9	328	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	5	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.82	0.0594	0.0475	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNUC2A_LARGE_INTESTINE	0.82	1	0.1069	FALSE	515	4851	409	746	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	5	0	ATXN3	12473	chr14:92537371:-	AR	23313	chrX:66765159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	5	0	ATXN3	12476	chr14:92537368:-	AR	23313	chrX:66765159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	5	0	ATXN3	12479	chr14:92537365:-	AR	23313	chrX:66765159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNUC2A_LARGE_INTESTINE	1	1	0.0594	TRUE	0	0	0	434	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-123O10.4--GRIP1	3	6	RP11-123O10.4	2167	chr12:67285681:-	GRIP1	11081	chr12:66990707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0.0713	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNUC2A_LARGE_INTESTINE	1	1	0.1069	FALSE	0	5	0	12	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-392P7.6--APOLD1	3	6	RP11-392P7.6	1089	chr12:13080748:+	APOLD1	24118	chr12:12965195:+	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0356	0.0713	LOCAL_REARRANGEMENT:+:[97751],RP11-392P7.6->chr12:13080660-13137579:+,APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+	SNUC2A_LARGE_INTESTINE	0.9	1	0.1069	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0.0713	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNUC2A_LARGE_INTESTINE	1	1	0.1069	FALSE	407	2205	196	549	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.82	0.0356	0.0713	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNUC2A_LARGE_INTESTINE	0.82	1	0.1069	FALSE	467	2173	244	435	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9436	15691	0	0	0.0475	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNUC2A_LARGE_INTESTINE	0	0	0.0594	FALSE	183	104	9	328	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	PTMA--PTMS	4	1	PTMA	6060	chr2:232576693:+	PTMS	13774	chr12:6879139:+	INCL_NON_REF_SPLICE	YES	2990	214	0	0.02	0.0475	0.0119	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	SNUC2A_LARGE_INTESTINE	0	0.02	0.0594	FALSE	0	0	0	16	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-392P7.6--APOLD1	2	9	RP11-392P7.6	3392	chr12:13100172:+	APOLD1	24118	chr12:12965195:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0238	0.1069	LOCAL_REARRANGEMENT:+:[97751],RP11-392P7.6->chr12:13080660-13137579:+,APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+	SNUC2A_LARGE_INTESTINE	0.92	1	0.1307	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	4	0	ATXN3	12465	chr14:92537379:-	AR	23317	chrX:66765163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0475	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	4	0	ATXN3	12465	chr14:92537379:-	AR	23320	chrX:66765166:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0475	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	4	0	ATXN3	12465	chr14:92537379:-	AR	23314	chrX:66765160:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0475	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNUC2A_LARGE_INTESTINE	1	1	0.0475	FALSE	183	104	9	328	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	PTMA--PTMS	4	0	PTMA	6054	chr2:232576687:+	PTMS	13976	chr12:6879341:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	SNUC2A_LARGE_INTESTINE	1	1	0.0475	TRUE	0	0	0	16	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-353N4.6--RP11-403I13.4	3	1	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	30	0	0.12	1	0.0356	0.0119	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	SNUC2A_LARGE_INTESTINE	0.12	1	0.0475	TRUE	61	154	6	19	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	3	0	ATXN3	12465	chr14:92537379:-	AR	23323	chrX:66765169:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	3	0	ATXN3	12488	chr14:92537356:-	AR	23313	chrX:66765159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	3	0	ATXN3	12485	chr14:92537359:-	AR	23313	chrX:66765159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	ATXN3--AR	3	0	ATXN3	12482	chr14:92537362:-	AR	23313	chrX:66765159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	SNUC2A_LARGE_INTESTINE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	BRI3BP--UBC	3	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNUC2A_LARGE_INTESTINE	1	1	0.0356	TRUE	5	99	5	34	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	CDK2AP1--KRT8	3	0	CDK2AP1	6608	chr12:123749765:-	KRT8	19376	chr12:53295717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1,KRT8->chr12:53290977-53343738:-,keratin_8	SNUC2A_LARGE_INTESTINE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	MATR3--CTNNA1	3	0	MATR3	9772	chr5:138629494:+	CTNNA1	57245	chr5:138221901:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	SNUC2A_LARGE_INTESTINE	1	1	0.0356	TRUE	2	3	0	5	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	MEF2A--OGT	3	0	MEF2A	4341	chr15:100138716:+	OGT	30612	chrX:70764417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0	MEF2A->chr15:100017370-100256671:+,myocyte_enhancer_factor_2A,OGT->O-linked_N-acetylglucosamine_(GlcNAc)_transferase,chrX:70752933-70795747:+	SNUC2A_LARGE_INTESTINE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-6N13.1--CTD-2374C24.1	2	4	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0238	0.0475	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SNUC2A_LARGE_INTESTINE	0.75	1	0.0713	TRUE	5	12	0	42	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0119	0.0713	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNUC2A_LARGE_INTESTINE	1	1	0.0832	FALSE	275	511	55	178	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	PPP1R12C--CNN2	2	1	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	65	472	0.04	0.01	0.0238	0.0119	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	SNUC2A_LARGE_INTESTINE	0.01	0.04	0.0357	FALSE	35	34	3	30	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	2	1	0.6	0.0238	0.0119	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNUC2A_LARGE_INTESTINE	0.6	1	0.0357	FALSE	16	356	14	466	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	VEZT--METAP2	2	1	VEZT	8853	chr12:95650398:+	METAP2	39229	chr12:95888733:+	ONLY_REF_SPLICE	YES	72	295	0.04	0.01	0.0238	0.0119	VEZT->chr12:95611522-95696566:+,vezatin,_adherens_junctions_transmembrane_protein,METAP2->Oncogene{Bushman},chr12:95867296-95909615:+,methionyl_aminopeptidase_2	SNUC2A_LARGE_INTESTINE	0.01	0.04	0.0357	FALSE	0	0	0	1	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	AC002066.1--AC073130.1	2	0	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	SNUC2A_LARGE_INTESTINE	1	1	0.0238	FALSE	0	1	1	30	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	CNOT2--LYZ	2	0	CNOT2	3472	chr12:70672054:+	LYZ	36454	chr12:69743888:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,LYZ->chr12:69742121-69748014:+,lysozyme	SNUC2A_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-624L4.1--RP11-265N7.1	2	0	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	SNUC2A_LARGE_INTESTINE	1	1	0.0238	FALSE	0	20	1	20	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP5-1158E12.3--HSPBAP1	2	0	RP5-1158E12.3	3112	chrX:45708809:-	HSPBAP1	19624	chr3:122459960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	RP5-1158E12.3->chrX:45707328-45710920:-,HSPBAP1->HSPB1_associated_protein_1,Oncogene{Bushman},chr3:122458846-122512671:-	SNUC2A_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	SLCO4A1--CABLES2	2	0	SLCO4A1	1109	chr20:61273905:+	CABLES2	19429	chr20:60971648:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,CABLES2->Cdk5_and_Abl_enzyme_substrate_2,chr20:60963688-60982341:-	SNUC2A_LARGE_INTESTINE	1	1	0.0238	TRUE	0	0	0	2	0	TRUE	ACH-000967
SNUC2A_LARGE_INTESTINE	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0119	0.0238	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNUC2A_LARGE_INTESTINE	1	1	0.0357	FALSE	93	270	15	244	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	ACBD5--PTCHD3	1	1	ACBD5	3725	chr10:27524021:-	PTCHD3	25076	chr10:27688169:-	ONLY_REF_SPLICE	YES	245	0	0.01	1	0.0119	0.0119	ACBD5->acyl-CoA_binding_domain_containing_5,chr10:27484146-27531059:-,PTCHD3->chr10:27687116-27703297:-,patched_domain_containing_3	SNUC2A_LARGE_INTESTINE	0.01	1	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	COX14--CERS5	1	1	COX14	1323	chr12:50506084:+	CERS5	19678	chr12:50529852:-	ONLY_REF_SPLICE	YES	13	51	0.13	0.04	0.0119	0.0119	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:+:-:[9335],COX14->COX14_cytochrome_c_oxidase_assembly_factor,chr12:50505762-50514240:+,CERS5->ceramide_synthase_5,chr12:50523575-50561288:-	SNUC2A_LARGE_INTESTINE	0.04	0.13	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	PANX2--PPP6R2	1	1	PANX2	1226	chr22:50609385:+	PPP6R2	24954	chr22:50873395:+	ONLY_REF_SPLICE	YES	22	108	0.08	0.02	0.0119	0.0119	PANX2->chr22:50609160-50618723:+,pannexin_2,PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2	SNUC2A_LARGE_INTESTINE	0.02	0.08	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	PTCHD3P1--LYZL1	1	1	PTCHD3P1	3116	chr10:29704341:+	LYZL1	20560	chr10:29599039:+	ONLY_REF_SPLICE	YES	114	0	0.02	1	0.0119	0.0119	LOCAL_REARRANGEMENT:+:[91074],PTCHD3P1->chr10:29698331-29776674:+,patched_domain_containing_3_pseudogene_1,LYZL1->chr10:29577990-29607257:+,lysozyme_like_1	SNUC2A_LARGE_INTESTINE	0.02	1	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	SEPT11--CCNI	1	1	SEPT11	18490	chr4:77952123:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	216	133	0.01	0.01	0.0119	0.0119	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	SNUC2A_LARGE_INTESTINE	0.01	0.01	0.0238	FALSE	1	0	0	1	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	SMYD3--ABCD3	1	1	SMYD3	1259	chr1:246670356:-	ABCD3	54182	chr1:94972094:+	ONLY_REF_SPLICE	YES	25	146	0.07	0.01	0.0119	0.0119	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+	SNUC2A_LARGE_INTESTINE	0.01	0.07	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	STAM2--LYPD6B	1	1	STAM2	13736	chr2:152980280:-	LYPD6B	27985	chr2:149987397:+	ONLY_REF_SPLICE	YES	83	26	0.02	0.07	0.0119	0.0119	STAM2->chr2:152973315-153032506:-,signal_transducing_adaptor_molecule_2,LYPD6B->LY6/PLAUR_domain_containing_6B,chr2:149894621-150071776:+	SNUC2A_LARGE_INTESTINE	0.02	0.07	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000967
SNUC2A_LARGE_INTESTINE	VEZT--METAP2	1	1	VEZT	14283	chr12:95660408:+	METAP2	38328	chr12:95887832:+	ONLY_REF_SPLICE	YES	100	391	0.02	0.01	0.0119	0.0119	VEZT->chr12:95611522-95696566:+,vezatin,_adherens_junctions_transmembrane_protein,METAP2->Oncogene{Bushman},chr12:95867296-95909615:+,methionyl_aminopeptidase_2	SNUC2A_LARGE_INTESTINE	0.01	0.02	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000967
NCIH1092_LUNG	TRIT1--PPIE	2664	2173	TRIT1	1194	chr1:40348990:-	PPIE	34056	chr1:40229361:+	ONLY_REF_SPLICE	YES	920	377	0.84	0.93	25.8261	21.0661	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.84	0.93	46.8922	TRUE	0	0	0	4	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	2032	3203	TRIT1	1194	chr1:40348990:-	PPIE	32921	chr1:40228189:+	ONLY_REF_SPLICE	YES	920	181	0.85	0.97	19.6992	31.0515	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.85	0.97	50.7507	TRUE	0	0	0	3	0	TRUE	ACH-000514
NCIH1092_LUNG	RLF--MYCL	1902	626	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	50	187	0.98	0.93	18.4389	6.0688	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH1092_LUNG	0.93	0.98	24.5077	TRUE	0	0	0	10	0	TRUE	ACH-000514
NCIH1092_LUNG	RLF--MYCL	1041	986	RLF	1264	chr1:40627308:+	MYCL	18060	chr1:40367115:-	ONLY_REF_SPLICE	YES	50	33	0.98	0.98	10.092	9.5588	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH1092_LUNG	0.98	0.98	19.6508	TRUE	0	0	0	6	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	59	3231	TRIT1	1194	chr1:40348990:-	PPIE	32722	chr1:40227990:+	ONLY_REF_SPLICE	YES	920	143	0.78	0.96	0.572	31.3229	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.78	0.96	31.8949	TRUE	0	0	0	3	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	5	3239	TRIT1	5744	chr1:40318403:-	PPIE	29796	chr1:40218582:+	ONLY_REF_SPLICE	YES	712	955	0.82	0.77	0.0485	31.4005	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.77	0.82	31.449	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	3	3235	TRIT1	1194	chr1:40348990:-	PPIE	31526	chr1:40226794:+	INCL_NON_REF_SPLICE	NO	920	135	0.78	0.96	0.0291	31.3617	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.78	0.96	31.3908	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	1	3237	TRIT1	1194	chr1:40348990:-	PPIE	29796	chr1:40218582:+	ONLY_REF_SPLICE	NO	920	955	0.78	0.77	0.0097	31.3811	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.77	0.78	31.3908	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	239	2263	TRIT1	1194	chr1:40348990:-	PPIE	34018	chr1:40229323:+	INCL_NON_REF_SPLICE	YES	920	453	0.73	0.85	2.317	21.9386	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.73	0.85	24.2556	TRUE	0	0	0	4	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	1	3204	TRIT1	8111	chr1:40315795:-	PPIE	32921	chr1:40228189:+	ONLY_REF_SPLICE	YES	321	181	0.91	0.95	0.0097	31.0612	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.91	0.95	31.0709	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	1	3204	TRIT1	4505	chr1:40319642:-	PPIE	32921	chr1:40228189:+	ONLY_REF_SPLICE	YES	737	181	0.81	0.95	0.0097	31.0612	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.81	0.95	31.0709	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TRIT1--PPIE	19	2231	TRIT1	1194	chr1:40348990:-	PPIE	34037	chr1:40229342:+	INCL_NON_REF_SPLICE	YES	920	448	0.71	0.83	0.1842	21.6284	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0.71	0.83	21.8126	TRUE	0	0	0	4	0	TRUE	ACH-000514
NCIH1092_LUNG	RP11-408A13.2--NFIB	152	68	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	114	1	0.66	1.4736	0.6592	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	NCIH1092_LUNG	0.66	1	2.1328	TRUE	0	14	0	20	14	FALSE	ACH-000514
NCIH1092_LUNG	RLF--MYCL	7	616	RLF	1264	chr1:40627308:+	MYCL	20894	chr1:40363640:-	INCL_NON_REF_SPLICE	YES	50	186	0.93	0.77	0.0679	5.9718	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH1092_LUNG	0.77	0.93	6.0397	TRUE	0	0	0	10	0	TRUE	ACH-000514
NCIH1092_LUNG	CBX5--DCD	101	37	CBX5	4174	chr12:54651298:-	DCD	21752	chr12:55042252:-	INCL_NON_REF_SPLICE	YES	443	0	0.24	1	0.9791	0.3587	CBX5->chr12:54624724-54673886:-,chromobox_5,DCD->chr12:55038375-55042277:-,dermcidin	NCIH1092_LUNG	0.24	1	1.3378	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	SMIM11--AP000318.2	100	27	SMIM11	2789	chr21:35751815:+	AP000318.2	19707	chr21:35697036:+	ONLY_REF_SPLICE	YES	237	0	0.35	1	0.9694	0.2618	LOCAL_REARRANGEMENT:+:[50445],SMIM11->chr21:35747779-35780164:+,AP000318.2->chr21:35577356-35697334:+	NCIH1092_LUNG	0.35	1	1.2312	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TIMM23B--LINC00843	86	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.8337	0.2811	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1092_LUNG	0.98	1	1.1148	TRUE	508	994	45	981	0	FALSE	ACH-000514
NCIH1092_LUNG	NUP210--WNT7A	79	47	NUP210	1250	chr3:13461560:-	WNT7A	48508	chr3:13916670:-	ONLY_REF_SPLICE	YES	175	0	0.42	1	0.7659	0.4556	{Klijn_CCL:Lung=1},NUP210->chr3:13357737-13461809:-,nucleoporin_210kDa,WNT7A->Wnt_family_member_7A,chr3:13857755-13921618:-	NCIH1092_LUNG	0.42	1	1.2215	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TP73--PACSIN2	76	47	TP73	2970	chr1:3599744:+	PACSIN2	29406	chr22:43308163:-	ONLY_REF_SPLICE	YES	0	52	1	0.7	0.7368	0.4556	{Klijn_CCL:Lung=1},TP73->Oncogene{Bushman},chr1:3569084-3652765:+,tumor_protein_p73,PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2	NCIH1092_LUNG	0.7	1	1.1924	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	ZNF654--HMGB2	78	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7562	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1092_LUNG	1	1	0.7562	TRUE	0	0	0	518	0	FALSE	ACH-000514
NCIH1092_LUNG	LINC01014--KCNMB2	64	20	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	10	115	0.89	0.42	0.6204	0.1939	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH1092_LUNG	0.42	0.89	0.8143	FALSE	11	60	26	37	0	FALSE	ACH-000514
NCIH1092_LUNG	OR51S1--TP53I11	68	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6592	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH1092_LUNG	1	1	0.6592	TRUE	402	216	10	229	0	FALSE	ACH-000514
NCIH1092_LUNG	RP11-680G10.1--GSE1	58	14	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.89	0.5623	0.1357	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1092_LUNG	0.89	1	0.698	TRUE	458	1351	185	561	0	FALSE	ACH-000514
NCIH1092_LUNG	RP11-123O10.4--GRIP1	53	20	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	10	1	0.88	0.5138	0.1939	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1092_LUNG	0.88	1	0.7077	FALSE	416	2512	207	587	0	FALSE	ACH-000514
NCIH1092_LUNG	RP4-565E6.1--HYDIN	43	22	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4169	0.2133	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1092_LUNG	1	1	0.6302	TRUE	456	1387	91	133	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	45	12	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2594	8	0.02	0.88	0.4363	0.1163	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.02	0.88	0.5526	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	LINC01014--KCNMB2	41	22	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	10	119	0.86	0.35	0.3975	0.2133	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH1092_LUNG	0.35	0.86	0.6108	FALSE	12	33	18	33	0	FALSE	ACH-000514
NCIH1092_LUNG	RP11-680G10.1--GSE1	38	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	141	1	0.24	0.3684	0.0679	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1092_LUNG	0.24	1	0.4363	TRUE	465	1949	224	605	0	FALSE	ACH-000514
NCIH1092_LUNG	AP003900.6--AC011718.2	36	14	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	2	1	0.96	0.98	0.349	0.1357	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH1092_LUNG	0.96	0.98	0.4847	TRUE	0	5	0	45	5	FALSE	ACH-000514
NCIH1092_LUNG	TIMM23--RP11-464F9.1	36	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	178	6	0.18	0.87	0.349	0.0291	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1092_LUNG	0.18	0.87	0.3781	TRUE	519	3926	326	965	0	FALSE	ACH-000514
NCIH1092_LUNG	CENPT--DPEP3	31	9	CENPT	9030	chr16:67866131:-	DPEP3	20144	chr16:68010678:-	ONLY_REF_SPLICE	YES	169	0	0.19	1	0.3005	0.0873	{Klijn_CCL:Lung=1},CENPT->centromere_protein_T,chr16:67862060-67881714:-,DPEP3->chr16:68009566-68014732:-,dipeptidase_3	NCIH1092_LUNG	0.19	1	0.3878	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	NR2C2--ANKRD28	26	20	NR2C2	21542	chr3:15080734:+	ANKRD28	34856	chr3:15807819:-	ONLY_REF_SPLICE	YES	58	17	0.44	0.73	0.2521	0.1939	NR2C2->chr3:14989091-15095107:+,nuclear_receptor_subfamily_2_group_C_member_2,ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-	NCIH1092_LUNG	0.44	0.73	0.446	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ND4L	9	78	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0873	0.7562	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1092_LUNG	0.99	1	0.8435	FALSE	344	821	44	306	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ND4L	4	97	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.0388	0.9404	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1092_LUNG	0.97	1	0.9792	FALSE	344	826	44	306	0	FALSE	ACH-000514
NCIH1092_LUNG	RP11-120D5.1--MID1	22	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	15	0.82	0.65	0.2133	0.0582	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1092_LUNG	0.65	0.82	0.2715	FALSE	16	356	14	466	0	FALSE	ACH-000514
NCIH1092_LUNG	AP003900.6--AC011718.2	22	4	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	1	1	0.96	0.96	0.2133	0.0388	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH1092_LUNG	0.96	0.96	0.2521	TRUE	0	3	0	38	3	FALSE	ACH-000514
NCIH1092_LUNG	MT-TA--MT-TC	22	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2133	0.0291	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1092_LUNG	1	1	0.2424	FALSE	462	80	0	856	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	18	14	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4	349	0.89	0.08	0.1745	0.1357	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.08	0.89	0.3102	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	15	24	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4	1	0.91	0.97	0.1454	0.2327	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.91	0.97	0.3781	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	AP000525.9--LA16c-60G3.6	18	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	11	0	0.65	1	0.1745	0.0194	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH1092_LUNG	0.65	1	0.1939	TRUE	0	42	0	133	42	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	15	8	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5586	35	0	0.4	0.1454	0.0776	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0	0.4	0.223	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND6--MT-TE	16	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1551	0.0388	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1092_LUNG	1	1	0.1939	FALSE	499	1288	110	792	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	9	31	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.0873	0.3005	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.98	1	0.3878	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	CALM3--MT-ND4L	15	5	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1283	0	0.02	1	0.1454	0.0485	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1092_LUNG	0.02	1	0.1939	FALSE	1	1	0	107	0	FALSE	ACH-000514
NCIH1092_LUNG	TP73--PACSIN2	12	16	TP73	2970	chr1:3599744:+	PACSIN2	31682	chr22:43289619:-	ONLY_REF_SPLICE	YES	0	105	1	0.21	0.1163	0.1551	{Klijn_CCL:Lung=1},TP73->Oncogene{Bushman},chr1:3569084-3652765:+,tumor_protein_p73,PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2	NCIH1092_LUNG	0.21	1	0.2714	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	CTD-2314B22.3--RP11-536C10.19	15	2	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	11	0	0.61	1	0.1454	0.0194	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	NCIH1092_LUNG	0.61	1	0.1648	TRUE	0	2	0	9	2	TRUE	ACH-000514
NCIH1092_LUNG	NPM1P24--SET	14	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1357	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1092_LUNG	1	1	0.1357	TRUE	0	0	0	434	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	4	35	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.3393	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	1	1	0.3781	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	3	33	MT-ND5	2792	chrM:14128:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0291	0.3199	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	1	1	0.349	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	5	22	MT-ND5	2648	chrM:13984:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	1719	0	0.02	1	0.0485	0.2133	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.02	1	0.2618	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	5	22	MT-ND5	2644	chrM:13980:+	MT-ATP8	5855	chrM:8408:+	INCL_NON_REF_SPLICE	YES	1725	0	0.02	1	0.0485	0.2133	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.02	1	0.2618	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	6	17	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16	8	0.59	0.74	0.0582	0.1648	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.59	0.74	0.223	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	RP11-120D5.1--MID1	8	8	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	7	15	0.7	0.52	0.0776	0.0776	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1092_LUNG	0.52	0.7	0.1552	FALSE	0	9	0	55	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	4	23	MT-ND5	2712	chrM:14048:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	20	1	0.57	0.96	0.0388	0.223	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.57	0.96	0.2618	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	3	26	MT-ND5	2749	chrM:14085:+	MT-ATP8	5896	chrM:8449:+	INCL_NON_REF_SPLICE	YES	1	1	0.97	0.97	0.0291	0.2521	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.97	0.97	0.2812	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	5	17	MT-ND5	2394	chrM:13730:+	MT-ATP8	5872	chrM:8425:+	INCL_NON_REF_SPLICE	YES	1656	0	0.01	1	0.0485	0.1648	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.01	1	0.2133	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	8	5	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	5035	3	0	0.81	0.0776	0.0485	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0	0.81	0.1261	FALSE	41	30	6	102	0	FALSE	ACH-000514
NCIH1092_LUNG	AC073342.12--KEL	9	0	AC073342.12	3786	chr7:142952392:-	KEL	6939	chr7:142659651:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0873	0	GTEx_FI:{Brain=[count:3=pct:0.5]},AC073342.12->chr7:142952357-142984473:-,KEL->ArcherDX_panel,FoundationOne_panel,Kell_blood_group,_metallo-endopeptidase,chr7:142638201-142659768:-	NCIH1092_LUNG	1	1	0.0873	TRUE	2	0	0	3	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	3	23	MT-ND5	2642	chrM:13978:+	MT-ATP8	5814	chrM:8367:+	INCL_NON_REF_SPLICE	YES	1813	0	0.01	1	0.0291	0.223	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.01	1	0.2521	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	CALM3--MT-ATP8	8	2	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	187	0	0.05	1	0.0776	0.0194	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.05	1	0.097	FALSE	12	0	0	26	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	5	13	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0.126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	1	1	0.1745	FALSE	209	205	15	279	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0776	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	1	1	0.0776	FALSE	230	198	14	283	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND6--MT-TE	7	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0.0388	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1092_LUNG	1	1	0.1067	FALSE	499	1288	110	792	0	FALSE	ACH-000514
NCIH1092_LUNG	SAMD1--NCL	8	0	SAMD1	2749	chr19:14200100:-	NCL	12087	chr2:232326374:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0776	0	SAMD1->chr19:14198652-14201848:-,sterile_alpha_motif_domain_containing_1,NCL->chr2:232318242-232348352:-,nucleolin	NCIH1092_LUNG	1	1	0.0776	TRUE	0	0	0	3	0	TRUE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	3	17	MT-ND5	2316	chrM:13652:+	MT-ATP8	5863	chrM:8416:+	INCL_NON_REF_SPLICE	YES	2066	0	0.01	1	0.0291	0.1648	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.01	1	0.1939	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	RP11-123O10.4--GRIP1	5	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	10	1	0.58	0.0485	0.0873	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1092_LUNG	0.58	1	0.1358	FALSE	93	270	15	244	0	FALSE	ACH-000514
NCIH1092_LUNG	CALM3--MT-ATP8	7	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11664	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	1	1	0.0679	FALSE	12	0	0	26	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	3	16	MT-ND5	2647	chrM:13983:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1751	8	0.01	0.7	0.0291	0.1551	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.01	0.7	0.1842	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	4	12	MT-ND5	2641	chrM:13977:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	1846	622	0.01	0.03	0.0388	0.1163	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.01	0.03	0.1551	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	FGF14-IT1--FGF14	6	3	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	157	1	0.05	0.0582	0.0291	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	NCIH1092_LUNG	0.05	1	0.0873	TRUE	71	201	23	28	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND6--MT-TE	6	3	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0.0291	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1092_LUNG	1	1	0.0873	FALSE	499	1288	110	792	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	5	6	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3068	35	0	0.24	0.0485	0.0582	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0	0.24	0.1067	FALSE	218	210	16	281	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND6--MT-TE	4	10	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0388	0.0969	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1092_LUNG	0.93	1	0.1357	FALSE	499	1288	110	792	0	FALSE	ACH-000514
NCIH1092_LUNG	C15orf57--CBX3	6	1	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	20	54	0.26	0.11	0.0582	0.0097	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1092_LUNG	0.11	0.26	0.0679	TRUE	267	562	48	632	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ATP6--MT-CO1	6	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	7498	13839	0	0	0.0582	0.0097	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1092_LUNG	0	0	0.0679	FALSE	183	104	9	328	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	3	13	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	921	1	0.02	0.94	0.0291	0.126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.02	0.94	0.1551	FALSE	216	209	16	281	0	FALSE	ACH-000514
NCIH1092_LUNG	RP4-565E6.1--HYDIN	4	9	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	16	1	0.45	0.0388	0.0873	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1092_LUNG	0.45	1	0.1261	TRUE	84	87	4	41	0	FALSE	ACH-000514
NCIH1092_LUNG	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1092_LUNG	1	1	0.0582	FALSE	13	9	0	364	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	6	0	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	1	1	0.0582	FALSE	231	205	14	283	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	6	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	1	1	0.0582	FALSE	230	193	14	283	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	6	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	1	1	0.0582	FALSE	231	205	14	283	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	3	12	MT-ND5	2514	chrM:13850:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	2028	349	0.01	0.04	0.0291	0.1163	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.01	0.04	0.1454	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	NPM1P24--SET	6	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1092_LUNG	1	1	0.0582	TRUE	0	0	0	434	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	5	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	10381	1	0	0.89	0.0485	0.0291	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0	0.89	0.0776	FALSE	231	217	16	283	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	5	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9102	35	0	0.19	0.0485	0.0291	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0	0.19	0.0776	FALSE	231	217	16	283	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	3	11	MT-ND5	2167	chrM:13503:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	4008	0	0	1	0.0291	0.1066	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0	1	0.1357	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	9435	0	0	1	0.0291	0.0969	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0	1	0.126	FALSE	231	217	16	283	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND6--MT-TE	4	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0388	0.0582	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1092_LUNG	0.91	1	0.097	FALSE	499	1288	110	792	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND6--MT-TE	4	6	MT-ND6	1053	chrM:14621:-	MT-TE	4526	chrM:14742:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.0582	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1092_LUNG	1	1	0.097	FALSE	499	1288	110	792	0	FALSE	ACH-000514
NCIH1092_LUNG	FNBP4--RAG1	4	5	FNBP4	11285	chr11:47755577:-	RAG1	28374	chr11:36541682:+	ONLY_REF_SPLICE	YES	87	0	0.09	1	0.0388	0.0485	FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,RAG1->chr11:36532259-36614706:+,recombination_activating_gene_1	NCIH1092_LUNG	0.09	1	0.0873	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	AP003900.6--AC011718.2	4	4	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	2	9	0.8	0.47	0.0388	0.0388	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH1092_LUNG	0.47	0.8	0.0776	TRUE	0	1	0	24	1	FALSE	ACH-000514
NCIH1092_LUNG	MT-ATP6--MT-CO1	5	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1092_LUNG	1	1	0.0485	FALSE	183	104	9	328	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1748	35	0.01	0.24	0.0291	0.0776	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0.01	0.24	0.1067	FALSE	216	209	16	281	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1092_LUNG	1	1	0.0485	FALSE	499	1288	110	792	0	FALSE	ACH-000514
NCIH1092_LUNG	FNBP4--RAG1	4	3	FNBP4	11285	chr11:47755577:-	RAG1	35008	chr11:36594841:+	ONLY_REF_SPLICE	YES	87	7	0.07	0.5	0.0388	0.0291	FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,RAG1->chr11:36532259-36614706:+,recombination_activating_gene_1	NCIH1092_LUNG	0.07	0.5	0.0679	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	LDLRAD3--PRR5L	4	3	LDLRAD3	5673	chr11:36120011:+	PRR5L	17578	chr11:36317840:+	INCL_NON_REF_SPLICE	YES	36	0	0.16	1	0.0388	0.0291	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	NCIH1092_LUNG	0.16	1	0.0679	FALSE	0	52	1	15	0	FALSE	ACH-000514
NCIH1092_LUNG	MAF--RP11-679B19.2	4	3	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.0291	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	NCIH1092_LUNG	1	1	0.0679	TRUE	48	25	3	38	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	11994	535	0	0.01	0.0388	0.0194	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0	0.01	0.0582	FALSE	231	217	16	283	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	3	6	MT-ND5	1807	chrM:13143:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	2287	482	0	0.02	0.0291	0.0582	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0	0.02	0.0873	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	SLC39A9--LINC00944	3	6	SLC39A9	3560	chr14:69890919:+	LINC00944	18312	chr12:127256798:-	INCL_NON_REF_SPLICE	YES	106	0	0.08	1	0.0291	0.0582	SLC39A9->chr14:69864732-69929105:+,solute_carrier_family_39_member_9,LINC00944->chr12:127214333-127256957:-,long_intergenic_non-protein_coding_RNA_944	NCIH1092_LUNG	0.08	1	0.0873	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	AP003900.6--AC011718.2	2	9	AP003900.6	3299	chr21:11174002:+	AC011718.2	11864	chr22:20653813:-	ONLY_REF_SPLICE	YES	2	1	0.85	0.92	0.0194	0.0873	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH1092_LUNG	0.85	0.92	0.1067	TRUE	0	5	0	45	5	FALSE	ACH-000514
NCIH1092_LUNG	C15orf57--CBX3	4	1	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	19	55	0.21	0.08	0.0388	0.0097	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1092_LUNG	0.08	0.21	0.0485	TRUE	267	562	48	632	0	FALSE	ACH-000514
NCIH1092_LUNG	CBX5--DCD	3	5	CBX5	4174	chr12:54651298:-	DCD	24427	chr12:55039491:-	ONLY_REF_SPLICE	YES	443	44	0.02	0.15	0.0291	0.0485	CBX5->chr12:54624724-54673886:-,chromobox_5,DCD->chr12:55038375-55042277:-,dermcidin	NCIH1092_LUNG	0.02	0.15	0.0776	TRUE	0	0	0	1	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ATP6--MT-CO1	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7286	14247	0	0	0.0388	0.0097	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1092_LUNG	0	0	0.0485	FALSE	183	104	9	328	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-CO1--SUMO2	4	1	MT-CO1	1592	chrM:6495:+	SUMO2	5567	chr17:73179054:-	INCL_NON_REF_SPLICE	YES	11841	0	0	1	0.0388	0.0097	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	NCIH1092_LUNG	0	1	0.0485	FALSE	0	0	0	12	0	FALSE	ACH-000514
NCIH1092_LUNG	GDAP1--RP11-758M4.1	4	0	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH1092_LUNG	1	1	0.0388	TRUE	7	28	0	43	0	FALSE	ACH-000514
NCIH1092_LUNG	LINC00299--AC007464.1	4	0	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	NCIH1092_LUNG	1	1	0.0388	TRUE	67	49	0	25	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	9782	0	0	1	0.0291	0.0388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0	1	0.0679	FALSE	231	217	16	283	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1529	chrM:11288:+	MT-ATP8	5425	chrM:8412:+	INCL_NON_REF_SPLICE	YES	12144	0	0	1	0.0291	0.0388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0	1	0.0679	FALSE	231	217	16	283	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1062	chrM:10821:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	1	1	0.0388	FALSE	230	192	14	283	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND5--MT-ATP8	3	4	MT-ND5	2223	chrM:13559:+	MT-ATP8	5968	chrM:8521:+	INCL_NON_REF_SPLICE	YES	2740	1701	0	0	0.0291	0.0388	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0	0	0.0679	FALSE	43	37	8	105	0	FALSE	ACH-000514
NCIH1092_LUNG	RP11-155G15.2--RP11-1E3.1	4	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH1092_LUNG	1	1	0.0388	FALSE	46	201	11	112	0	FALSE	ACH-000514
NCIH1092_LUNG	SAMD1--NCL	4	0	SAMD1	2749	chr19:14200100:-	NCL	12060	chr2:232326401:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	SAMD1->chr19:14198652-14201848:-,sterile_alpha_motif_domain_containing_1,NCL->chr2:232318242-232348352:-,nucleolin	NCIH1092_LUNG	1	1	0.0388	TRUE	0	0	0	3	0	TRUE	ACH-000514
NCIH1092_LUNG	ZNF654--HMGB2	4	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1092_LUNG	1	1	0.0388	TRUE	0	0	0	518	0	FALSE	ACH-000514
NCIH1092_LUNG	AP003900.6--AC011718.2	3	3	AP003900.6	1122	chr21:11169841:+	AC011718.2	11864	chr22:20653813:-	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0291	0.0291	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH1092_LUNG	0.86	0.86	0.0582	TRUE	0	3	0	38	3	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	10879	0	0	1	0.0291	0.0291	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0	1	0.0582	FALSE	231	217	16	283	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	9610	1	0	0.86	0.0291	0.0291	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0	0.86	0.0582	FALSE	231	217	16	283	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-TA--MT-TC	3	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0291	0.0291	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1092_LUNG	1	1	0.0582	FALSE	462	80	0	856	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	9804	1	0	0.83	0.0291	0.0194	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0	0.83	0.0485	FALSE	231	217	16	283	0	FALSE	ACH-000514
NCIH1092_LUNG	CBFA2T3--CHMP1A	3	1	CBFA2T3	9249	chr16:88958290:-	CHMP1A	26848	chr16:89713739:-	ONLY_REF_SPLICE	YES	47	247	0.08	0.02	0.0291	0.0097	CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH1092_LUNG	0.02	0.08	0.0388	TRUE	0	0	0	1	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7536	14484	0	0	0.0291	0.0097	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1092_LUNG	0	0	0.0388	FALSE	183	104	9	328	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	9102	1689	0	0	0.0291	0.0097	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1092_LUNG	0	0	0.0388	FALSE	231	217	16	283	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND4--MT-ND4L	3	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0291	0.0097	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1092_LUNG	1	1	0.0388	FALSE	344	821	44	306	0	FALSE	ACH-000514
NCIH1092_LUNG	RP11-408A13.2--NFIB	3	1	RP11-408A13.2	1096	chr9:14531945:-	NFIB	13366	chr9:14179779:-	INCL_NON_REF_SPLICE	YES	0	245	1	0.02	0.0291	0.0097	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	NCIH1092_LUNG	0.02	1	0.0388	TRUE	0	0	0	2	0	FALSE	ACH-000514
NCIH1092_LUNG	ADARB2--ADARB2-AS1	3	0	ADARB2	1426	chr10:1779245:-	ADARB2-AS1	25289	chr10:1598806:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	NEIGHBORS_OVERLAP:-:+:[30347],ADARB2->Oncogene{Bushman},adenosine_deaminase,_RNA_specific_B2_(inactive),chr10:1228073-1779670:-,ADARB2-AS1->ADARB2_antisense_RNA_1,chr10:1568832-1599179:+	NCIH1092_LUNG	1	1	0.0291	FALSE	0	0	0	1	0	FALSE	ACH-000514
NCIH1092_LUNG	MFSD2A--ZMPSTE24	3	0	MFSD2A	6799	chr1:40431686:+	ZMPSTE24	18397	chr1:40733458:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	MFSD2A->chr1:40420802-40435638:+,major_facilitator_superfamily_domain_containing_2A,ZMPSTE24->chr1:40723779-40759856:+,zinc_metallopeptidase_STE24	NCIH1092_LUNG	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0291	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1092_LUNG	1	1	0.0291	FALSE	183	104	9	328	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0291	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1092_LUNG	1	1	0.0291	FALSE	499	1288	110	792	0	FALSE	ACH-000514
NCIH1092_LUNG	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0291	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1092_LUNG	1	1	0.0291	FALSE	462	80	0	856	0	FALSE	ACH-000514
NCIH1092_LUNG	VTI1A--RP11-57H14.3	2	4	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	29	0	0.17	1	0.0194	0.0388	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH1092_LUNG	0.17	1	0.0582	FALSE	272	151	14	158	0	FALSE	ACH-000514
NCIH1092_LUNG	NUP210--WNT7A	1	6	NUP210	1250	chr3:13461560:-	WNT7A	50970	chr3:13896300:-	ONLY_REF_SPLICE	YES	175	34	0.04	0.17	0.0097	0.0582	{Klijn_CCL:Lung=1},NUP210->chr3:13357737-13461809:-,nucleoporin_210kDa,WNT7A->Wnt_family_member_7A,chr3:13857755-13921618:-	NCIH1092_LUNG	0.04	0.17	0.0679	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TP73--PACSIN2	2	2	TP73	1122	chr1:3569205:+	PACSIN2	29406	chr22:43308163:-	ONLY_REF_SPLICE	NO	0	52	1	0.07	0.0194	0.0194	{Klijn_CCL:Lung=1},TP73->Oncogene{Bushman},chr1:3569084-3652765:+,tumor_protein_p73,PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2	NCIH1092_LUNG	0.07	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	AP003900.6--AC011718.2	1	5	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	2	2	0.75	0.75	0.0097	0.0485	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH1092_LUNG	0.75	0.75	0.0582	TRUE	0	1	0	20	1	FALSE	ACH-000514
NCIH1092_LUNG	HP1BP3--EIF4G3	2	1	HP1BP3	1129	chr1:21113688:-	EIF4G3	28440	chr1:21415706:-	ONLY_REF_SPLICE	YES	41	14	0.07	0.18	0.0194	0.0097	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	NCIH1092_LUNG	0.07	0.18	0.0291	TRUE	0	2	0	6	0	TRUE	ACH-000514
NCIH1092_LUNG	LDLRAD3--PRR5L	2	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	34366	chr11:36422547:+	ONLY_REF_SPLICE	YES	36	1	0.08	0.75	0.0194	0.0097	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	NCIH1092_LUNG	0.08	0.75	0.0291	FALSE	12	71	0	11	0	FALSE	ACH-000514
NCIH1092_LUNG	NFYC--PPIE	2	1	NFYC	11226	chr1:41204620:+	PPIE	38756	chr1:40214575:+	ONLY_REF_SPLICE	YES	241	915	0.01	0	0.0194	0.0097	NFYC->chr1:41157320-41237275:+,nuclear_transcription_factor_Y_subunit_gamma,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1092_LUNG	0	0.01	0.0291	FALSE	0	0	0	1	0	FALSE	ACH-000514
NCIH1092_LUNG	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0.0097	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1092_LUNG	1	1	0.0291	TRUE	62	24	1	171	0	FALSE	ACH-000514
NCIH1092_LUNG	VTI1A--RP11-57H14.3	2	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	YES	29	0	0.09	1	0.0194	0.0097	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH1092_LUNG	0.09	1	0.0291	FALSE	28	14	1	23	0	FALSE	ACH-000514
NCIH1092_LUNG	AGBL4--RP11-567C20.3	1	4	AGBL4	2274	chr1:50317068:-	RP11-567C20.3	28162	chr1:50671980:-	ONLY_REF_SPLICE	YES	12	0	0.29	1	0.0097	0.0388	AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,RP11-567C20.3->chr1:50671756-50688799:-	NCIH1092_LUNG	0.29	1	0.0485	TRUE	0	1	0	2	1	TRUE	ACH-000514
NCIH1092_LUNG	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	47891	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	NCIH1092_LUNG	1	1	0.0194	TRUE	1	3	0	10	0	TRUE	ACH-000514
NCIH1092_LUNG	FAM76B--SUPT16H	2	0	FAM76B	3786	chr11:95520788:-	SUPT16H	34611	chr14:21822699:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	FAM76B->chr11:95502106-95523573:-,family_with_sequence_similarity_76_member_B,SUPT16H->SPT16_homolog,_facilitates_chromatin_remodeling_subunit,chr14:21819631-21852425:-	NCIH1092_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	FBXL5--RP11-484O2.1	2	0	FBXL5	16339	chr4:15613889:-	RP11-484O2.1	22958	chr4:15364147:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	FBXL5->F-box_and_leucine-rich_repeat_protein_5,chr4:15606162-15683302:-,RP11-484O2.1->chr4:15359765-15421656:-	NCIH1092_LUNG	1	1	0.0194	TRUE	1	6	0	5	2	TRUE	ACH-000514
NCIH1092_LUNG	FOXK2--TBCD	2	0	FOXK2	11869	chr17:80545148:+	TBCD	43065	chr17:80828100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D	NCIH1092_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	MB21D2--FGF12	2	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	NCIH1092_LUNG	1	1	0.0194	FALSE	0	17	0	46	0	FALSE	ACH-000514
NCIH1092_LUNG	NCAM2--GPC5	2	0	NCAM2	1304	chr21:22370936:+	GPC5	45796	chr13:93518535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NCAM2->chr21:22370633-22915650:+,neural_cell_adhesion_molecule_2,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	NCIH1092_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	PPP1R12C--PPP6R1	2	0	PPP1R12C	8950	chr19:55610152:-	PPP6R1	21911	chr19:55758477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_FI:{Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Small_Intestine_-_Terminal_Ileum=1,Esophagus_-_Muscularis=1,Colon_-_Transverse=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,PPP6R1->chr19:55741148-55770363:-,protein_phosphatase_6_regulatory_subunit_1	NCIH1092_LUNG	1	1	0.0194	TRUE	2	0	0	2	0	FALSE	ACH-000514
NCIH1092_LUNG	PTGES2--SPTAN1	2	0	PTGES2	4764	chr9:130885981:-	SPTAN1	37461	chr9:131369883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	PTGES2->chr9:130882972-130890741:-,prostaglandin_E_synthase_2,SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1	NCIH1092_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	RNF152--RP11-879F14.1	2	0	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	NCIH1092_LUNG	1	1	0.0194	FALSE	275	472	65	43	0	FALSE	ACH-000514
NCIH1092_LUNG	RP1-101K10.6--AL590867.1	2	0	RP1-101K10.6	1056	chr6:153304940:+	AL590867.1	8494	chr6:153667581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	RP1-101K10.6->chr6:153304885-153310358:+,AL590867.1->chr6:153552455-153668623:+	NCIH1092_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	SEC14L1--PGS1	2	0	SEC14L1	11207	chr17:75139741:+	PGS1	47389	chr17:76410960:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	SEC14L1->SEC14_like_lipid_binding_1,chr17:75082798-75213179:+,PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1	NCIH1092_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	TCFL5--CHMP1A	2	0	TCFL5	5786	chr20:61485368:-	CHMP1A	17527	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	TCFL5->chr20:61472467-61493115:-,transcription_factor_like_5,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH1092_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	ZBED3--TTC3	2	0	ZBED3	1213	chr5:76382936:-	TTC3	31060	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	ZBED3->chr5:76367897-76383148:-,zinc_finger_BED-type_containing_3,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH1092_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	FNBP4--RAG1	1	3	FNBP4	11285	chr11:47755577:-	RAG1	30548	chr11:36584935:+	ONLY_REF_SPLICE	YES	87	0	0.04	1	0.0097	0.0291	FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,RAG1->chr11:36532259-36614706:+,recombination_activating_gene_1	NCIH1092_LUNG	0.04	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000514
NCIH1092_LUNG	RP11-120D5.1--MID1	1	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	6	15	0.4	0.21	0.0097	0.0291	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1092_LUNG	0.21	0.4	0.0388	FALSE	0	48	1	163	0	FALSE	ACH-000514
NCIH1092_LUNG	BACH1-IT1--BACH1	1	1	BACH1-IT1	3243	chr21:30733564:+	BACH1	27605	chr21:30969890:+	ONLY_REF_SPLICE	YES	1	4	0.67	0.33	0.0097	0.0097	NEIGHBORS_OVERLAP:+:+:[10260],BACH1-IT1->BACH1_intronic_transcript_1,chr21:30723955-30734215:+,BACH1->BTB_domain_and_CNC_homolog_1,chr21:30566392-31003071:+	NCIH1092_LUNG	0.33	0.67	0.0194	FALSE	0	1	0	1	0	FALSE	ACH-000514
NCIH1092_LUNG	BACH1-IT1--BACH1	1	1	BACH1-IT1	2030	chr21:30724984:+	BACH1	27605	chr21:30969890:+	ONLY_REF_SPLICE	YES	0	4	1	0.33	0.0097	0.0097	NEIGHBORS_OVERLAP:+:+:[10260],BACH1-IT1->BACH1_intronic_transcript_1,chr21:30723955-30734215:+,BACH1->BTB_domain_and_CNC_homolog_1,chr21:30566392-31003071:+	NCIH1092_LUNG	0.33	1	0.0194	FALSE	22	22	0	3	0	FALSE	ACH-000514
NCIH1092_LUNG	CPSF6--RAD50	1	1	CPSF6	11046	chr12:69656342:+	RAD50	46848	chr5:131978697:+	ONLY_REF_SPLICE	YES	164	41	0.01	0.05	0.0097	0.0097	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,RAD50->ArcherDX_panel,FoundationOne_panel,RAD50_double_strand_break_repair_protein,chr5:131891711-131980313:+	NCIH1092_LUNG	0.01	0.05	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000514
NCIH1092_LUNG	FARS2--RP3-380B8.4	1	1	FARS2	9557	chr6:5613553:+	RP3-380B8.4	14405	chr6:5852296:+	ONLY_REF_SPLICE	YES	8	1	0.2	0.67	0.0097	0.0097	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	NCIH1092_LUNG	0.2	0.67	0.0194	FALSE	1	11	1	4	0	FALSE	ACH-000514
NCIH1092_LUNG	PRKDC--MCM4	1	1	PRKDC	54194	chr8:48751709:-	MCM4	92601	chr8:48877134:+	ONLY_REF_SPLICE	NO	390	680	0.01	0	0.0097	0.0097	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[2],PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4	NCIH1092_LUNG	0	0.01	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000514
NCIH1092_LUNG	RP1-34H18.1--NAV3	1	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0097	0.0097	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH1092_LUNG	1	1	0.0194	TRUE	254	575	65	124	0	FALSE	ACH-000514
NCIH1092_LUNG	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	4	1	0.33	0.0097	0.0097	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1092_LUNG	0.33	1	0.0194	TRUE	160	277	29	98	0	FALSE	ACH-000514
NCIH1092_LUNG	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	480	1	0	0.0097	0.0097	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1092_LUNG	0	1	0.0194	FALSE	64	13	3	59	0	FALSE	ACH-000514
NCIH1092_LUNG	SAMD13--FAM120AOS	1	1	SAMD13	4961	chr1:84768970:+	FAM120AOS	18653	chr9:96212881:-	ONLY_REF_SPLICE	YES	14	120	0.12	0.02	0.0097	0.0097	SAMD13->chr1:84764049-84855640:+,sterile_alpha_motif_domain_containing_13,FAM120AOS->chr9:96208776-96215874:-,family_with_sequence_similarity_120A_opposite_strand	NCIH1092_LUNG	0.02	0.12	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000514
NCIH1092_LUNG	SLC39A9--LINC00944	1	1	SLC39A9	3560	chr14:69890919:+	LINC00944	22984	chr12:127232673:-	ONLY_REF_SPLICE	NO	106	1	0.02	0.67	0.0097	0.0097	SLC39A9->chr14:69864732-69929105:+,solute_carrier_family_39_member_9,LINC00944->chr12:127214333-127256957:-,long_intergenic_non-protein_coding_RNA_944	NCIH1092_LUNG	0.02	0.67	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000514
NCIH1092_LUNG	UGDH-AS1--TMEM178B	1	1	UGDH-AS1	1320	chr4:39529958:+	TMEM178B	12249	chr7:140912391:+	ONLY_REF_SPLICE	YES	16	54	0.11	0.04	0.0097	0.0097	UGDH-AS1->UGDH_antisense_RNA_1,chr4:39529639-39596327:+,TMEM178B->chr7:140774032-141180180:+,transmembrane_protein_178B	NCIH1092_LUNG	0.04	0.11	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000514
PANC0213_PANCREAS	MT-TA--MT-TN	184	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.7916	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0213_PANCREAS	1	1	1.7916	FALSE	369	2501	205	193	0	FALSE	ACH-000031
PANC0213_PANCREAS	WDR33--SAP130	165	34	WDR33	1176	chr2:128568586:-	SAP130	51360	chr2:128707982:-	ONLY_REF_SPLICE	YES	57	17	0.78	0.92	1.6066	0.3311	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	PANC0213_PANCREAS	0.78	0.92	1.9377	TRUE	0	0	0	2	0	TRUE	ACH-000031
PANC0213_PANCREAS	ANLN--EEPD1	99	28	ANLN	23717	chr7:36483471:+	EEPD1	35070	chr7:36320724:+	ONLY_REF_SPLICE	YES	175	6	0.42	0.95	0.964	0.2726	LOCAL_REARRANGEMENT:+:[88263],ANLN->Oncogene{Bushman},anillin_actin_binding_protein,chr7:36429415-36493400:+,EEPD1->chr7:36192758-36341152:+,endonuclease/exonuclease/phosphatase_family_domain_containing_1	PANC0213_PANCREAS	0.42	0.95	1.2366	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	MT-TA--MT-TC	95	16	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.925	0.1558	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0213_PANCREAS	1	1	1.0808	FALSE	462	80	0	856	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND6--MT-TE	96	4	MT-ND6	1051	chrM:14623:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9348	0.0389	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0213_PANCREAS	1	1	0.9737	FALSE	499	1288	110	792	0	FALSE	ACH-000031
PANC0213_PANCREAS	TIMM23B--LINC00843	89	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8666	0.185	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PANC0213_PANCREAS	1	1	1.0516	TRUE	508	994	45	981	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	8	241	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	14	0	0.95	1	0.0779	2.3466	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.95	1	2.4245	FALSE	344	826	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	5	238	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	12	0	0.95	1	0.0487	2.3174	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.95	1	2.3661	FALSE	344	826	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	3	243	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	20	0	0.92	1	0.0292	2.3661	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.92	1	2.3953	FALSE	344	827	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	4	239	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	8	0	0.97	1	0.0389	2.3272	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.97	1	2.3661	FALSE	344	826	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	3	242	MT-ND4	1213	chrM:10972:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	20	0	0.92	1	0.0292	2.3564	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.92	1	2.3856	FALSE	344	826	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	3	241	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	22	0	0.92	1	0.0292	2.3466	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.92	1	2.3758	FALSE	344	826	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	41	71	MT-ND4	1152	chrM:10911:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	YES	14	1	0.89	0.99	0.3992	0.6913	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.89	0.99	1.0905	FALSE	344	826	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	54	12	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5110	8	0.01	0.89	0.5258	0.1168	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	0.01	0.89	0.6426	FALSE	43	37	8	105	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	4	198	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	7	0	0.97	1	0.0389	1.9279	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.97	1	1.9668	FALSE	344	826	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	TIMM23--RP11-464F9.1	53	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	87	4	0.39	0.93	0.5161	0.0195	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PANC0213_PANCREAS	0.39	0.93	0.5356	TRUE	519	3926	326	965	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	5	172	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	10	0	0.95	1	0.0487	1.6748	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.95	1	1.7235	FALSE	344	821	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-TA--MT-TN	17	117	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1655	1.1392	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0213_PANCREAS	1	1	1.3047	FALSE	369	2501	205	193	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-TA--MT-TN	42	1	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.409	0.0097	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0213_PANCREAS	1	1	0.4187	FALSE	369	2501	205	193	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-TA--MT-TN	34	32	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3311	0.3116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0213_PANCREAS	1	1	0.6427	FALSE	369	2501	205	193	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND6--MT-TE	31	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.9	1	0.3018	0.1558	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0213_PANCREAS	0.9	1	0.4576	FALSE	499	1288	110	792	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	20	57	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	12077	1	0.01	0.99	0.1947	0.555	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.01	0.99	0.7497	FALSE	328	800	43	304	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-TA--MT-TN	12	83	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1168	0.8082	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0213_PANCREAS	1	1	0.925	FALSE	369	2501	205	193	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	23	32	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12	0	0.82	1	0.224	0.3116	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.82	1	0.5356	FALSE	344	826	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	3	99	MT-ND4	1112	chrM:10871:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	8	1	0.93	0.99	0.0292	0.964	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.93	0.99	0.9932	FALSE	344	826	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-TA--MT-TC	23	15	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.224	0.1461	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0213_PANCREAS	1	1	0.3701	FALSE	462	80	0	856	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-TA--MT-TN	16	41	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1558	0.3992	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0213_PANCREAS	1	1	0.555	FALSE	369	2501	205	193	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	8	67	MT-CO3	1159	chrM:9365:+	MT-ATP6	4932	chrM:8674:+	INCL_NON_REF_SPLICE	YES	28	26	0.73	0.74	0.0779	0.6524	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	0.73	0.74	0.7303	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	3	87	MT-CO3	1550	chrM:9756:+	MT-ATP6	4730	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0292	0.8471	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	0.98	1	0.8763	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	22	10	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6716	48	0	0.4	0.2142	0.0974	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	0	0.4	0.3116	FALSE	43	37	8	105	0	FALSE	ACH-000031
PANC0213_PANCREAS	WDR33--SAP130	16	34	WDR33	1176	chr2:128568586:-	SAP130	51363	chr2:128707979:-	INCL_NON_REF_SPLICE	YES	57	17	0.47	0.75	0.1558	0.3311	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	PANC0213_PANCREAS	0.47	0.75	0.4869	TRUE	0	0	0	2	0	TRUE	ACH-000031
PANC0213_PANCREAS	MT-TA--MT-TN	24	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2337	0.0097	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0213_PANCREAS	1	1	0.2434	FALSE	369	2501	205	193	0	FALSE	ACH-000031
PANC0213_PANCREAS	PLXDC1--TAF13	24	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2337	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	PANC0213_PANCREAS	1	1	0.2337	TRUE	7	10	0	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	10	52	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	2	32	0.97	0.66	0.0974	0.5063	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	0.66	0.97	0.6037	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	3	77	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	10	0	0.89	1	0.0292	0.7498	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.89	1	0.779	FALSE	344	821	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	18	17	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.1753	0.1655	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	0.92	1	0.3408	FALSE	43	37	8	105	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	5	65	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	28	3	0.71	0.96	0.0487	0.6329	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	0.71	0.96	0.6816	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-RNR2	20	4	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	10749	8572	0	0	0.1947	0.0389	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0213_PANCREAS	0	0	0.2336	FALSE	63	17	1	58	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	7	56	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	610	1	0.09	0.98	0.0682	0.5453	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.09	0.98	0.6135	FALSE	344	827	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	3	69	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	7	54	0.91	0.57	0.0292	0.6719	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	0.57	0.91	0.7011	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	5	55	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	22	1	0.73	0.98	0.0487	0.5355	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.73	0.98	0.5842	FALSE	344	826	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	10	33	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	7448	0	0.01	1	0.0974	0.3213	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.01	1	0.4187	FALSE	344	827	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	10	33	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	714	0	0.06	1	0.0974	0.3213	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.06	1	0.4187	FALSE	344	827	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	4	56	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	5239	1	0.01	0.98	0.0389	0.5453	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.01	0.98	0.5842	FALSE	344	827	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	14	13	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	3	549	0.9	0.05	0.1363	0.1266	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	0.05	0.9	0.2629	FALSE	43	37	8	105	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	9	32	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	20	0	0.67	1	0.0876	0.3116	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.67	1	0.3992	FALSE	344	826	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	RGS12--HTT	16	4	RGS12	8553	chr4:3344780:+	HTT	67400	chr4:3174047:+	ONLY_REF_SPLICE	YES	6	22	0.77	0.48	0.1558	0.0389	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[49079],RGS12->chr4:3294755-3441640:+,regulator_of_G-protein_signaling_12,HTT->chr4:3076408-3245676:+,huntingtin	PANC0213_PANCREAS	0.48	0.77	0.1947	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	16	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	28	0	0.4	1	0.1558	0.0292	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	0.4	1	0.185	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-TA--MT-TN	16	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1558	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0213_PANCREAS	1	1	0.1558	FALSE	369	2501	205	193	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND6--MT-TE	10	23	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0974	0.224	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0213_PANCREAS	1	1	0.3214	FALSE	499	1288	110	792	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-RNR2	14	4	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	10344	8362	0	0	0.1363	0.0389	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0213_PANCREAS	0	0	0.1752	FALSE	63	17	1	58	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND6--MT-TE	15	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1461	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0213_PANCREAS	1	1	0.1461	FALSE	499	1288	110	792	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	4	42	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	11	0	0.81	1	0.0389	0.409	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.81	1	0.4479	FALSE	344	821	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	7	29	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	22	0	0.62	1	0.0682	0.2824	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.62	1	0.3506	FALSE	344	826	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-TA--MT-TC	14	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1363	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0213_PANCREAS	1	1	0.1363	FALSE	462	80	0	856	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-TA--MT-TC	9	20	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0876	0.1947	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0213_PANCREAS	1	1	0.2823	FALSE	462	80	0	856	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND6--MT-TE	7	26	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.87	1	0.0682	0.2532	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0213_PANCREAS	0.87	1	0.3214	FALSE	499	1288	110	792	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	5	33	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	367	0	0.09	1	0.0487	0.3213	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.09	1	0.37	FALSE	344	827	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	CHMP5--SLC24A2	11	8	CHMP5	2173	chr9:33266112:+	SLC24A2	14527	chr9:19622297:-	ONLY_REF_SPLICE	YES	156	0	0.11	1	0.1071	0.0779	CHMP5->charged_multivesicular_body_protein_5,chr9:33264940-33281977:+,SLC24A2->chr9:19507450-19786926:-,solute_carrier_family_24_member_2	PANC0213_PANCREAS	0.11	1	0.185	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	MT-ND3--MT-ATP8	13	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1266	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	1	1	0.1266	FALSE	351	233	23	137	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-CO1	12	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11095	21812	0	0	0.1168	0.0292	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0213_PANCREAS	0	0	0.146	FALSE	183	104	9	328	0	FALSE	ACH-000031
PANC0213_PANCREAS	HSP90AB1--MT-RNR2	12	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1168	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0213_PANCREAS	1	1	0.1168	FALSE	13	9	0	364	0	FALSE	ACH-000031
PANC0213_PANCREAS	NRIP1--AF127936.7	11	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1071	0.0292	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0213_PANCREAS	0.88	1	0.1363	FALSE	292	1546	117	613	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	3	34	MT-CO3	1033	chrM:9239:+	MT-ATP6	4768	chrM:8510:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0292	0.3311	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	0.95	1	0.3603	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-CO1	11	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	9326	21436	0	0	0.1071	0.0097	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0213_PANCREAS	0	0	0.1168	FALSE	183	104	9	328	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	3	32	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	14	0	0.71	1	0.0292	0.3116	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.71	1	0.3408	FALSE	344	826	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-TA--MT-TN	11	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1071	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0213_PANCREAS	1	1	0.1071	FALSE	369	2501	205	193	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	6	18	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0584	0.1753	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	1	1	0.2337	FALSE	43	37	8	105	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND6--MT-TE	4	26	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	5	0	0.86	1	0.0389	0.2532	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0213_PANCREAS	0.86	1	0.2921	FALSE	499	1288	110	792	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-RNR2	10	1	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	10338	8396	0	0	0.0974	0.0097	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0213_PANCREAS	0	0	0.1071	FALSE	63	17	1	58	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	7	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	22	0	0.48	1	0.0682	0.1266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.48	1	0.1948	FALSE	344	826	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	6	16	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0584	0.1558	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	0.92	1	0.2142	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	7	12	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	6534	0	0	1	0.0682	0.1168	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	0	1	0.185	FALSE	43	37	8	105	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	5	20	MT-ND5	2730	chrM:14066:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.0487	0.1947	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	0.89	1	0.2434	FALSE	43	37	8	105	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND6--MT-TE	3	27	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.0292	0.2629	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0213_PANCREAS	0.88	1	0.2921	FALSE	499	1288	110	792	0	FALSE	ACH-000031
PANC0213_PANCREAS	WDR33--SAP130	1	34	WDR33	1439	chr2:128568323:-	SAP130	51360	chr2:128707982:-	ONLY_REF_SPLICE	YES	63	17	0.36	0.67	0.0097	0.3311	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	PANC0213_PANCREAS	0.36	0.67	0.3408	TRUE	0	0	0	2	0	TRUE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	6	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	47	0	0.29	1	0.0584	0.1266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.29	1	0.185	FALSE	344	827	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-CO1	8	4	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	YES	4708	21681	0	0	0.0779	0.0389	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0213_PANCREAS	0	0	0.1168	FALSE	183	104	9	328	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND6--MT-TE	3	24	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.87	1	0.0292	0.2337	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0213_PANCREAS	0.87	1	0.2629	FALSE	499	1288	110	792	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	6	11	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	3	0	0.85	1	0.0584	0.1071	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	0.85	1	0.1655	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	4	19	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0389	0.185	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.96	1	0.2239	FALSE	344	821	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-CO1	8	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9104	21812	0	0	0.0779	0.0097	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0213_PANCREAS	0	0	0.0876	FALSE	183	104	9	328	0	FALSE	ACH-000031
PANC0213_PANCREAS	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0779	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0213_PANCREAS	1	1	0.0779	FALSE	13	9	0	364	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	3	20	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0.1947	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	1	1	0.2239	FALSE	43	37	8	105	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	5	12	MT-ND5	2303	chrM:13639:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3921	8	0	0.68	0.0487	0.1168	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	0	0.68	0.1655	FALSE	43	37	8	105	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND6--MT-TE	4	16	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0389	0.1558	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0213_PANCREAS	0.95	1	0.1947	FALSE	499	1288	110	792	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-CO1	7	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9455	21987	0	0	0.0682	0.0195	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0213_PANCREAS	0	0	0.0877	FALSE	183	104	9	328	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	3	16	MT-ND5	2667	chrM:14003:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	NO	1719	0	0.01	1	0.0292	0.1558	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	0.01	1	0.185	FALSE	43	37	8	105	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0682	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0213_PANCREAS	1	1	0.0682	FALSE	499	1288	110	792	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	3	15	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8	8	0.69	0.69	0.0292	0.1461	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	0.69	0.69	0.1753	FALSE	43	37	8	105	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	5	6	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	30	0	0.27	1	0.0487	0.0584	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	0.27	1	0.1071	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	6	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0584	0.0195	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	1	1	0.0779	FALSE	344	821	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	4	10	MT-ND5	2112	chrM:13448:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	6716	0	0	1	0.0389	0.0974	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	0	1	0.1363	FALSE	43	37	8	105	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	3	13	MT-ND4	1843	chrM:11602:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	8660	0	0	1	0.0292	0.1266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0	1	0.1558	FALSE	344	827	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	3	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	47	0	0.25	1	0.0292	0.1266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.25	1	0.1558	FALSE	344	827	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	RP11-133O22.6--CDKN2B-AS1	6	1	RP11-133O22.6	3486	chr9:33798366:-	CDKN2B-AS1	11941	chr9:22046750:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0584	0.0097	RP11-133O22.6->chr9:33785948-33818793:-,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	PANC0213_PANCREAS	1	1	0.0681	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	CHMP5--SLC24A2	4	8	CHMP5	3220	chr9:33267897:+	SLC24A2	14527	chr9:19622297:-	ONLY_REF_SPLICE	YES	130	0	0.08	1	0.0389	0.0779	CHMP5->charged_multivesicular_body_protein_5,chr9:33264940-33281977:+,SLC24A2->chr9:19507450-19786926:-,solute_carrier_family_24_member_2	PANC0213_PANCREAS	0.08	1	0.1168	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-RNR2	6	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0584	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0213_PANCREAS	1	1	0.0584	FALSE	63	17	1	58	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	4	8	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	4	0	0.75	1	0.0389	0.0779	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	0.75	1	0.1168	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	3	12	MT-ND5	2288	chrM:13624:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	NO	4078	1	0	0.94	0.0292	0.1168	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	0	0.94	0.146	FALSE	43	37	8	105	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	3	12	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	3946	0	0	1	0.0292	0.1168	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	0	1	0.146	FALSE	43	37	8	105	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	5	4	MT-ND5	1795	chrM:13131:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4635	0	0	1	0.0487	0.0389	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	0	1	0.0876	FALSE	43	37	8	105	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-CO1	5	3	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	NO	10623	19226	0	0	0.0487	0.0292	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0213_PANCREAS	0	0	0.0779	FALSE	183	104	9	328	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-CO1	3	11	MT-ATP6	1444	chrM:8970:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	8764	18506	0	0	0.0292	0.1071	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0213_PANCREAS	0	0	0.1363	FALSE	183	104	9	328	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	3	11	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	27	0	0.34	1	0.0292	0.1071	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	0.34	1	0.1363	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	AP000350.10--PI4KA	5	2	AP000350.10	4431	chr22:24219358:+	PI4KA	29130	chr22:21119981:-	ONLY_REF_SPLICE	YES	0	14	1	0.33	0.0487	0.0195	AP000350.10->chr22:24204375-24237410:+,PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha	PANC0213_PANCREAS	0.33	1	0.0682	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	MT-TA--MT-TC	4	6	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0.0584	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0213_PANCREAS	1	1	0.0973	FALSE	462	80	0	856	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-CO1	5	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	8765	16486	0	0	0.0487	0.0097	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0213_PANCREAS	0	0	0.0584	FALSE	183	104	9	328	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-CO1	3	8	MT-ATP6	1200	chrM:8726:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	12928	11450	0	0	0.0292	0.0779	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0213_PANCREAS	0	0	0.1071	FALSE	183	104	9	328	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-RNR2	4	4	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	10749	0	0	1	0.0389	0.0389	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0213_PANCREAS	0	1	0.0778	FALSE	63	17	1	58	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0213_PANCREAS	1	1	0.0487	FALSE	63	17	1	58	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	5	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	1	1	0.0487	FALSE	344	821	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	4	4	MT-ND5	1635	chrM:12971:+	MT-ATP8	5887	chrM:8440:+	INCL_NON_REF_SPLICE	YES	5910	0	0	1	0.0389	0.0389	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	0	1	0.0778	FALSE	42	36	7	104	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0213_PANCREAS	1	1	0.0487	FALSE	499	1288	110	792	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-CO1	4	3	MT-ATP6	1380	chrM:8906:+	MT-CO1	5953	chrM:7175:+	INCL_NON_REF_SPLICE	YES	11637	16856	0	0	0.0389	0.0292	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0213_PANCREAS	0	0	0.0681	FALSE	183	104	9	328	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	3	7	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	27	0	0.27	1	0.0292	0.0682	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	0.27	1	0.0974	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	3	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	27	0	0.25	1	0.0292	0.0584	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	0.25	1	0.0876	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-RNR2	3	5	MT-ATP6	1400	chrM:8926:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	YES	10349	8387	0	0	0.0292	0.0487	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0213_PANCREAS	0	0	0.0779	FALSE	63	17	1	58	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND6--MT-TE	3	5	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0.0487	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0213_PANCREAS	1	1	0.0779	FALSE	499	1288	110	792	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND6--MT-TE	3	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0.0487	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0213_PANCREAS	1	1	0.0779	FALSE	499	1288	110	792	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-TA--MT-TN	4	1	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0.0097	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0213_PANCREAS	1	1	0.0486	FALSE	369	2501	205	193	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-CO1	4	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0213_PANCREAS	1	1	0.0389	FALSE	183	104	9	328	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0213_PANCREAS	1	1	0.0389	FALSE	63	17	1	58	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0213_PANCREAS	1	1	0.0389	FALSE	63	17	1	58	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	1	1	0.0389	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	1	1	0.0389	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	4	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	1	1	0.0389	FALSE	344	821	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	3	4	MT-ND5	1828	chrM:13164:+	MT-ATP8	5867	chrM:8420:+	INCL_NON_REF_SPLICE	NO	5044	0	0	1	0.0292	0.0389	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	0	1	0.0681	FALSE	43	37	8	105	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	3	4	MT-ND5	1785	chrM:13121:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4588	0	0	1	0.0292	0.0389	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	0	1	0.0681	FALSE	43	37	8	105	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1046	chrM:14628:-	MT-TE	4575	chrM:14693:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0213_PANCREAS	1	1	0.0389	FALSE	499	1288	110	792	0	FALSE	ACH-000031
PANC0213_PANCREAS	TAGLN2--MT-ND5	4	0	TAGLN2	6046	chr1:159888579:-	MT-ND5	10456	chrM:13064:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	TAGLN2->chr1:159887897-159895522:-,transgelin_2,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0213_PANCREAS	1	1	0.0389	FALSE	0	0	0	9	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-CO1	3	3	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	11024	19123	0	0	0.0292	0.0292	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0213_PANCREAS	0	0	0.0584	FALSE	183	104	9	328	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-CO1	3	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	4739	chrM:5961:+	INCL_NON_REF_SPLICE	YES	11095	0	0	1	0.0292	0.0292	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0213_PANCREAS	0	1	0.0584	FALSE	182	97	9	327	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	3	3	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	30	0	0.17	1	0.0292	0.0292	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	0.17	1	0.0584	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	3	1	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	9	1	0.31	0.8	0.0292	0.0097	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.31	0.8	0.0389	FALSE	344	821	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND4--MT-ND4L	3	1	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	7	1	0.36	0.8	0.0292	0.0097	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0213_PANCREAS	0.36	0.8	0.0389	FALSE	344	821	44	306	0	FALSE	ACH-000031
PANC0213_PANCREAS	UBE2L3--MEI1	3	1	UBE2L3	5318	chr22:21965332:+	MEI1	21716	chr22:42128249:+	ONLY_REF_SPLICE	YES	228	0	0.02	1	0.0292	0.0097	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	PANC0213_PANCREAS	0.02	1	0.0389	TRUE	0	0	0	1	0	FALSE	ACH-000031
PANC0213_PANCREAS	CTD-2152M20.2--GOLPH3	3	0	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	PANC0213_PANCREAS	1	1	0.0292	TRUE	10	26	2	24	0	FALSE	ACH-000031
PANC0213_PANCREAS	IGF2R--FAM50A	3	0	IGF2R	1002	chr6:160390132:+	FAM50A	54148	chrX:153672551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor,FAM50A->chrX:153672473-153679002:+,family_with_sequence_similarity_50_member_A	PANC0213_PANCREAS	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1123	chrM:8649:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0213_PANCREAS	1	1	0.0292	FALSE	63	17	1	58	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-CO3--MT-ATP6	3	0	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0213_PANCREAS	1	1	0.0292	FALSE	189	492	56	216	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND3--MT-ATP8	3	0	MT-ND3	1094	chrM:10152:+	MT-ATP8	4474	chrM:8493:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	1	1	0.0292	FALSE	351	233	23	137	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND3--MT-ATP8	3	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	1	1	0.0292	FALSE	351	233	23	137	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND5--MT-ATP8	3	0	MT-ND5	1076	chrM:12412:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	1	1	0.0292	FALSE	34	25	3	77	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1028	chrM:14646:-	MT-TE	4550	chrM:14718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0213_PANCREAS	1	1	0.0292	FALSE	499	1288	110	792	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0213_PANCREAS	1	1	0.0292	FALSE	499	1288	110	792	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-TA--MT-TN	3	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0213_PANCREAS	1	1	0.0292	FALSE	369	2501	205	193	0	FALSE	ACH-000031
PANC0213_PANCREAS	MT-TA--MT-TN	3	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0213_PANCREAS	1	1	0.0292	FALSE	369	2501	205	193	0	FALSE	ACH-000031
PANC0213_PANCREAS	RP11-123O10.4--GRIP1	3	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PANC0213_PANCREAS	1	1	0.0292	FALSE	416	2512	207	587	0	FALSE	ACH-000031
PANC0213_PANCREAS	TINAGL1--MT-ATP8	3	0	TINAGL1	10574	chr1:32052892:+	MT-ATP8	14089	chrM:8484:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	TINAGL1->chr1:32042116-32053288:+,tubulointerstitial_nephritis_antigen_like_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0213_PANCREAS	1	1	0.0292	FALSE	0	0	0	1	0	FALSE	ACH-000031
PANC0213_PANCREAS	CHMP5--SLC24A2	1	7	CHMP5	2173	chr9:33266112:+	SLC24A2	15566	chr9:19619690:-	ONLY_REF_SPLICE	YES	156	0	0.05	1	0.0097	0.0682	CHMP5->charged_multivesicular_body_protein_5,chr9:33264940-33281977:+,SLC24A2->chr9:19507450-19786926:-,solute_carrier_family_24_member_2	PANC0213_PANCREAS	0.05	1	0.0779	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	NRIP1--AF127936.7	2	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.28	1	0.0195	0.0292	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0213_PANCREAS	0.28	1	0.0487	FALSE	164	806	69	479	0	FALSE	ACH-000031
PANC0213_PANCREAS	UBE2L3--MEI1	2	1	UBE2L3	5318	chr22:21965332:+	MEI1	21940	chr22:42128473:+	ONLY_REF_SPLICE	YES	228	0	0.01	1	0.0195	0.0097	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	PANC0213_PANCREAS	0.01	1	0.0292	FALSE	0	0	0	1	0	FALSE	ACH-000031
PANC0213_PANCREAS	ADAMTS16--RPL37A	2	0	ADAMTS16	6309	chr5:5187921:+	RPL37A	38935	chr2:217443644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	ADAMTS16->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_16,chr5:5140443-5320417:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	PANC0213_PANCREAS	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	ADD1--FAM214B	2	0	ADD1	1168	chr4:2845751:+	FAM214B	38283	chr9:35108734:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	ADD1->adducin_1,chr4:2845584-2931803:+,FAM214B->chr9:35104109-35116338:-,family_with_sequence_similarity_214_member_B	PANC0213_PANCREAS	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	HMGB3P22--RAC1	2	0	HMGB3P22	1253	chr5:179106285:+	RAC1	12161	chr7:6439757:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	HMGB3P22->chr5:179106033-179121782:+,high_mobility_group_box_3_pseudogene_22,RAC1->ArcherDX_panel,FoundationOne_panel,chr7:6414154-6443608:+,ras-related_C3_botulinum_toxin_substrate_1_(rho_family,_small_GTP_binding_protein_Rac1)	PANC0213_PANCREAS	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000031
PANC0213_PANCREAS	NRIP1--AF127936.7	1	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0097	0.0292	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0213_PANCREAS	0.57	1	0.0389	FALSE	125	705	46	456	0	FALSE	ACH-000031
PANC0213_PANCREAS	WDR33--SAP130	1	2	WDR33	1176	chr2:128568586:-	SAP130	51774	chr2:128707568:-	ONLY_REF_SPLICE	YES	57	54	0.05	0.05	0.0097	0.0195	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	PANC0213_PANCREAS	0.05	0.05	0.0292	TRUE	0	0	0	2	0	FALSE	ACH-000031
PANC0213_PANCREAS	ATP5B--SHISA5	1	1	ATP5B	5770	chr12:57033764:-	SHISA5	15541	chr3:48520666:-	ONLY_REF_SPLICE	YES	721	32	0	0.06	0.0097	0.0097	ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-,SHISA5->chr3:48509197-48542259:-,shisa_family_member_5	PANC0213_PANCREAS	0	0.06	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000031
PANC0213_PANCREAS	POLA2--RBM25	1	1	POLA2	4756	chr11:65036200:+	RBM25	27034	chr14:73538335:+	ONLY_REF_SPLICE	NO	31	80	0.06	0.02	0.0097	0.0097	POLA2->chr11:65029233-65073060:+,polymerase_(DNA)_alpha_2,_accessory_subunit,RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+	PANC0213_PANCREAS	0.02	0.06	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000031
PANC0213_PANCREAS	TICAM2--AP3S1	1	1	TICAM2	2825	chr5:114956132:-	AP3S1	17968	chr5:115230784:+	ONLY_REF_SPLICE	YES	128	106	0.02	0.02	0.0097	0.0097	TICAM2->chr5:114914339-114961876:-,toll_like_receptor_adaptor_molecule_2,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	PANC0213_PANCREAS	0.02	0.02	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000031
PANC0213_PANCREAS	UBE2L3--MEI1	1	1	UBE2L3	5318	chr22:21965332:+	MEI1	27487	chr22:42148595:+	ONLY_REF_SPLICE	NO	228	1	0.01	0.67	0.0097	0.0097	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	PANC0213_PANCREAS	0.01	0.67	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000031
PANC0213_PANCREAS	XRCC1--ZNF428	1	1	XRCC1	3206	chr19:44079062:-	ZNF428	17605	chr19:44118586:-	ONLY_REF_SPLICE	YES	36	3	0.05	0.4	0.0097	0.0097	LOCAL_REARRANGEMENT:-:[26746],XRCC1->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_1,chr19:44047192-44084625:-,ZNF428->chr19:44111371-44124026:-,zinc_finger_protein_428	PANC0213_PANCREAS	0.05	0.4	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000031
SLR24_KIDNEY	MTND4P12--MTATP6P1	109	3	MTND4P12	1209	chr5:134263518:-	MTATP6P1	5316	chr1:569014:+	INCL_NON_REF_SPLICE	YES	5	0	0.96	1	1.3098	0.036	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.96	1	1.3458	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	TIMM23B--LINC00843	79	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9493	0.3605	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SLR24_KIDNEY	0.99	1	1.3098	TRUE	508	994	45	981	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	56	3	MTND4P12	1216	chr5:134263511:-	MTATP6P1	5319	chr1:569017:+	INCL_NON_REF_SPLICE	YES	5	0	0.92	1	0.6729	0.036	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.92	1	0.7089	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MT-TA--MT-TC	51	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6128	0.0841	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR24_KIDNEY	1	1	0.6969	FALSE	462	80	0	856	0	FALSE	ACH-000272
SLR24_KIDNEY	KANSL1--ARL17B	47	22	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	40	135	0.63	0.34	0.5648	0.2644	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SLR24_KIDNEY	0.34	0.63	0.8292	TRUE	181	1564	124	196	0	FALSE	ACH-000272
SLR24_KIDNEY	MTATP6P1--MTND2P28	50	0	MTATP6P1	1098	chr1:569173:+	MTND2P28	5521	chr1:565859:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6008	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SLR24_KIDNEY	1	1	0.6008	TRUE	20	3	0	12	0	FALSE	ACH-000272
SLR24_KIDNEY	TIMM23--RP11-464F9.1	48	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	422	3	0.11	0.94	0.5768	0.036	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SLR24_KIDNEY	0.11	0.94	0.6128	TRUE	519	3926	326	965	0	FALSE	ACH-000272
SLR24_KIDNEY	ARMC10--OSR1	46	0	ARMC10	12353	chr7:102740016:+	OSR1	19766	chr2:19554191:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5527	0	GTEx_FI:{Blood_Vessel=[count:3=pct:0.8],Brain=[count:3=pct:0.5],Thyroid=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Esophagus=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Ovary=[count:1=pct:1.9]},ARMC10->armadillo_repeat_containing_10,chr7:102715328-102740205:+,OSR1->chr2:19551246-19558414:-,odd-skipped_related_transciption_factor_1	SLR24_KIDNEY	1	1	0.5527	TRUE	15	4	0	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	45	3	MTND4P12	1213	chr5:134263514:-	MTATP6P1	5323	chr1:569021:+	INCL_NON_REF_SPLICE	YES	5	0	0.91	1	0.5407	0.036	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.91	1	0.5767	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	18	82	MTND4P12	1828	chr5:134262899:-	MTATP6P1	5323	chr1:569021:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.2163	0.9853	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.98	1	1.2016	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	NPM1P24--SET	34	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4086	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SLR24_KIDNEY	1	1	0.4086	TRUE	0	0	0	434	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	18	62	MTND4P12	1773	chr5:134262954:-	MTATP6P1	5319	chr1:569017:+	INCL_NON_REF_SPLICE	YES	3	0	0.96	1	0.2163	0.745	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.96	1	0.9613	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	5	109	MTND4P12	2250	chr5:134262477:-	MTATP6P1	5323	chr1:569021:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0601	1.3098	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.98	1	1.3699	TRUE	27	22	4	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	3	107	MTND4P12	2231	chr5:134262496:-	MTATP6P1	5312	chr1:569010:+	INCL_NON_REF_SPLICE	NO	2	0	0.98	1	0.036	1.2857	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.98	1	1.3217	TRUE	27	22	4	8	0	FALSE	ACH-000272
SLR24_KIDNEY	CCDC171--HNRNPC	25	10	CCDC171	5173	chr9:15579021:+	HNRNPC	70470	chr14:21679725:-	ONLY_REF_SPLICE	YES	0	1310	1	0.03	0.3004	0.1202	CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	SLR24_KIDNEY	0.03	1	0.4206	TRUE	0	0	0	1	0	FALSE	ACH-000272
SLR24_KIDNEY	MT-ND6--MT-TE	25	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3004	0.0841	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR24_KIDNEY	1	1	0.3845	FALSE	499	1288	110	792	0	FALSE	ACH-000272
SLR24_KIDNEY	SHISA9--U91319.1	23	9	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	39	0	0.45	1	0.2764	0.1081	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	SLR24_KIDNEY	0.45	1	0.3845	FALSE	4	37	0	19	0	FALSE	ACH-000272
SLR24_KIDNEY	MT-ND6--MT-TE	22	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2644	0.0841	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR24_KIDNEY	1	1	0.3485	FALSE	499	1288	110	792	0	FALSE	ACH-000272
SLR24_KIDNEY	MT-ND6--MT-TE	19	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	8	0	0.82	1	0.2283	0.2043	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR24_KIDNEY	0.82	1	0.4326	FALSE	499	1288	110	792	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	6	64	MTND4P12	1783	chr5:134262944:-	MTATP6P1	5323	chr1:569021:+	INCL_NON_REF_SPLICE	YES	3	0	0.96	1	0.0721	0.769	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.96	1	0.8411	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	11	42	MTND4P12	1467	chr5:134263260:-	MTATP6P1	5323	chr1:569021:+	INCL_NON_REF_SPLICE	YES	10	0	0.84	1	0.1322	0.5047	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.84	1	0.6369	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MIPEPP3--ABHD12	20	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2403	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	SLR24_KIDNEY	1	1	0.2403	TRUE	64	202	9	44	0	FALSE	ACH-000272
SLR24_KIDNEY	MT-ND6--MT-TE	7	46	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0841	0.5527	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR24_KIDNEY	1	1	0.6368	FALSE	499	1288	110	792	0	FALSE	ACH-000272
SLR24_KIDNEY	C15orf57--CBX3	13	17	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	41	26	0.42	0.54	0.1562	0.2043	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SLR24_KIDNEY	0.42	0.54	0.3605	TRUE	267	562	48	632	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	16	3	MTND4P12	1205	chr5:134263522:-	MTATP6P1	5319	chr1:569017:+	INCL_NON_REF_SPLICE	YES	6	0	0.76	1	0.1923	0.036	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.76	1	0.2283	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	13	14	MTND4P12	1756	chr5:134262971:-	MTATP6P1	5665	chr1:569363:+	INCL_NON_REF_SPLICE	YES	2	2040	0.93	0.01	0.1562	0.1682	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.01	0.93	0.3244	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	NRIP1--AF127936.7	15	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.85	1	0.1802	0.024	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR24_KIDNEY	0.85	1	0.2042	FALSE	292	1546	117	613	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	13	5	MTND4P12	1248	chr5:134263479:-	MTATP6P1	5536	chr1:569234:+	INCL_NON_REF_SPLICE	YES	5	3252	0.78	0.01	0.1562	0.0601	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.01	0.78	0.2163	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	14	0	MTND4P12	1211	chr5:134263516:-	MTATP6P1	5634	chr1:569332:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1682	0	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	1	1	0.1682	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	14	0	MTND4P12	1216	chr5:134263511:-	MTATP6P1	5637	chr1:569335:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1682	0	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	1	1	0.1682	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	VTI1A--TCF7L2	13	4	VTI1A	6899	chr10:114224416:+	TCF7L2	30150	chr10:114900943:+	ONLY_REF_SPLICE	YES	17	6	0.5	0.74	0.1562	0.0481	Cosmic{samples=98,mutations=4,papers=1},GTEx&tcga_normals:1/3694=0.03%,VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,TCF7L2->Oncogene{Bushman},chr10:114710009-114927437:+,transcription_factor_7_like_2	SLR24_KIDNEY	0.5	0.74	0.2043	TRUE	0	1	0	1	1	TRUE	ACH-000272
SLR24_KIDNEY	MT-TA--MT-TC	12	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1442	0.0841	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR24_KIDNEY	1	1	0.2283	FALSE	462	80	0	856	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	13	3	MTND4P12	1209	chr5:134263518:-	MTATP6P1	5319	chr1:569017:+	INCL_NON_REF_SPLICE	YES	5	0	0.76	1	0.1562	0.036	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.76	1	0.1922	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MT-ND6--MT-TE	7	24	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0841	0.2884	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR24_KIDNEY	1	1	0.3725	FALSE	499	1288	110	792	0	FALSE	ACH-000272
SLR24_KIDNEY	MT-ND6--MT-TE	5	31	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	8	0	0.82	1	0.0601	0.3725	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR24_KIDNEY	0.82	1	0.4326	FALSE	499	1288	110	792	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	5	29	MTND4P12	1299	chr5:134263428:-	MTATP6P1	5323	chr1:569021:+	INCL_NON_REF_SPLICE	YES	41	0	0.45	1	0.0601	0.3485	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.45	1	0.4086	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	3	35	MTND4P12	1752	chr5:134262975:-	MTATP6P1	5456	chr1:569154:+	INCL_NON_REF_SPLICE	YES	2	1	0.95	0.97	0.036	0.4206	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.95	0.97	0.4566	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	PLXDC1--TAF13	11	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1322	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SLR24_KIDNEY	1	1	0.1322	TRUE	7	10	0	216	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	4	26	MTND4P12	2122	chr5:134262605:-	MTATP6P1	5627	chr1:569325:+	INCL_NON_REF_SPLICE	NO	4	3238	0.88	0.01	0.0481	0.3124	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.01	0.88	0.3605	FALSE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MT-ND6--MT-TE	6	17	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	6	0	0.79	1	0.0721	0.2043	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR24_KIDNEY	0.79	1	0.2764	FALSE	499	1288	110	792	0	FALSE	ACH-000272
SLR24_KIDNEY	MT-TA--MT-TC	7	12	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0841	0.1442	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR24_KIDNEY	1	1	0.2283	FALSE	462	80	0	856	0	FALSE	ACH-000272
SLR24_KIDNEY	ZNF654--HMGB2	10	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1202	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SLR24_KIDNEY	1	1	0.1202	TRUE	0	0	0	518	0	FALSE	ACH-000272
SLR24_KIDNEY	MT-ND6--MT-TE	6	14	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0721	0.1682	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR24_KIDNEY	1	1	0.2403	FALSE	499	1288	110	792	0	FALSE	ACH-000272
SLR24_KIDNEY	MTATP6P1--MTND2P28	3	26	MTATP6P1	1400	chr1:569475:+	MTND2P28	4734	chr1:565072:+	INCL_NON_REF_SPLICE	YES	4415	0	0.01	1	0.036	0.3124	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SLR24_KIDNEY	0.01	1	0.3484	TRUE	20	3	0	12	0	FALSE	ACH-000272
SLR24_KIDNEY	MTATP6P1--MTND2P28	3	25	MTATP6P1	1249	chr1:569324:+	MTND2P28	4816	chr1:565154:+	INCL_NON_REF_SPLICE	YES	4331	3526	0.01	0.01	0.036	0.3004	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SLR24_KIDNEY	0.01	0.01	0.3364	TRUE	20	3	0	12	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	9	1	MTND4P12	1248	chr5:134263479:-	MTATP6P1	5786	chr1:569484:+	INCL_NON_REF_SPLICE	YES	5	4697	0.67	0	0.1081	0.012	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0	0.67	0.1201	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	C15orf57--CBX3	6	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	40	29	0.31	0.38	0.0721	0.1442	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SLR24_KIDNEY	0.31	0.38	0.2163	TRUE	267	562	48	632	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	7	6	MTND4P12	1243	chr5:134263484:-	MTATP6P1	5434	chr1:569132:+	INCL_NON_REF_SPLICE	YES	5	0	0.72	1	0.0841	0.0721	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.72	1	0.1562	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTATP6P1--MTND2P28	8	0	MTATP6P1	1122	chr1:569197:+	MTND2P28	5368	chr1:565706:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0961	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SLR24_KIDNEY	1	1	0.0961	TRUE	20	3	0	12	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	6	8	MTND4P12	1903	chr5:134262824:-	MTATP6P1	5826	chr1:569524:+	INCL_NON_REF_SPLICE	YES	2	2494	0.88	0.01	0.0721	0.0961	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.01	0.88	0.1682	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	7	3	MTND4P12	1216	chr5:134263511:-	MTATP6P1	5426	chr1:569124:+	INCL_NON_REF_SPLICE	YES	5	0	0.67	1	0.0841	0.036	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.67	1	0.1201	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	3	19	MTND4P12	1828	chr5:134262899:-	MTATP6P1	5617	chr1:569315:+	INCL_NON_REF_SPLICE	YES	2	3385	0.92	0.01	0.036	0.2283	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.01	0.92	0.2643	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MT-TA--MT-TC	7	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0841	0.024	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR24_KIDNEY	1	1	0.1081	FALSE	462	80	0	856	0	FALSE	ACH-000272
SLR24_KIDNEY	MTATP6P1--MTND2P28	3	17	MTATP6P1	1137	chr1:569212:+	MTND2P28	4927	chr1:565265:+	INCL_NON_REF_SPLICE	YES	3604	5551	0.01	0	0.036	0.2043	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SLR24_KIDNEY	0	0.01	0.2403	TRUE	20	3	0	12	0	FALSE	ACH-000272
SLR24_KIDNEY	MT-TA--MT-TY	7	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0841	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SLR24_KIDNEY	1	1	0.0841	FALSE	13	214	14	42	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	6	3	MTND4P12	1220	chr5:134263507:-	MTATP6P1	5409	chr1:569107:+	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.0721	0.036	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.64	1	0.1081	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	3	15	MTND4P12	1756	chr5:134262971:-	MTATP6P1	5662	chr1:569360:+	INCL_NON_REF_SPLICE	YES	2	2293	0.9	0.01	0.036	0.1802	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.01	0.9	0.2162	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTATP6P1--MTND2P28	5	5	MTATP6P1	1140	chr1:569215:+	MTND2P28	5395	chr1:565733:+	INCL_NON_REF_SPLICE	YES	3778	1647	0	0.01	0.0601	0.0601	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SLR24_KIDNEY	0	0.01	0.1202	TRUE	20	3	0	12	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	6	1	MTND4P12	1471	chr5:134263256:-	MTATP6P1	5933	chr1:569631:+	INCL_NON_REF_SPLICE	YES	9	1552	0.44	0	0.0721	0.012	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0	0.44	0.0841	FALSE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	RP11-123O10.4--GRIP1	6	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0721	0.012	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SLR24_KIDNEY	1	1	0.0841	FALSE	416	2512	207	587	0	FALSE	ACH-000272
SLR24_KIDNEY	MT-TA--MT-TC	3	12	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0.1442	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR24_KIDNEY	1	1	0.1802	FALSE	462	80	0	856	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	3	11	MTND4P12	1471	chr5:134263256:-	MTATP6P1	5627	chr1:569325:+	INCL_NON_REF_SPLICE	YES	9	3238	0.61	0	0.036	0.1322	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0	0.61	0.1682	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	3	11	MTND4P12	1251	chr5:134263476:-	MTATP6P1	5444	chr1:569142:+	INCL_NON_REF_SPLICE	YES	5	0	0.74	1	0.036	0.1322	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.74	1	0.1682	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	4	7	MTND4P12	1452	chr5:134263275:-	MTATP6P1	5778	chr1:569476:+	INCL_NON_REF_SPLICE	YES	10	4559	0.52	0	0.0481	0.0841	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0	0.52	0.1322	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MT-TA--MT-TC	3	10	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0.1202	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR24_KIDNEY	1	1	0.1562	FALSE	462	80	0	856	0	FALSE	ACH-000272
SLR24_KIDNEY	MTATP6P1--MTND2P28	3	10	MTATP6P1	1124	chr1:569199:+	MTND2P28	4684	chr1:565022:+	INCL_NON_REF_SPLICE	YES	2466	0	0.01	1	0.036	0.1202	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SLR24_KIDNEY	0.01	1	0.1562	TRUE	20	3	0	12	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	4	6	MTND4P12	1259	chr5:134263468:-	MTATP6P1	5678	chr1:569376:+	INCL_NON_REF_SPLICE	YES	6	1490	0.62	0.01	0.0481	0.0721	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0.01	0.62	0.1202	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	3	9	MTND4P12	1312	chr5:134263415:-	MTATP6P1	5597	chr1:569295:+	INCL_NON_REF_SPLICE	YES	57	3566	0.17	0	0.036	0.1081	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0	0.17	0.1441	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	hsa-mir-6723--MTND2P28	5	1	hsa-mir-6723	1578	chr1:567031:+	MTND2P28	6224	chr1:565700:+	INCL_NON_REF_SPLICE	YES	2438	2696	0	0	0.0601	0.012	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SLR24_KIDNEY	0	0	0.0721	FALSE	2	1	0	4	0	FALSE	ACH-000272
SLR24_KIDNEY	hsa-mir-6723--MTND2P28	5	1	hsa-mir-6723	1554	chr1:567007:+	MTND2P28	5588	chr1:565064:+	INCL_NON_REF_SPLICE	YES	2447	0	0	1	0.0601	0.012	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SLR24_KIDNEY	0	1	0.0721	FALSE	2	1	0	4	0	FALSE	ACH-000272
SLR24_KIDNEY	MT-ND6--MT-TE	5	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0601	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR24_KIDNEY	1	1	0.0601	FALSE	499	1288	110	792	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	5	0	MTND4P12	1215	chr5:134263512:-	MTATP6P1	5749	chr1:569447:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0601	0	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	1	1	0.0601	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	3	8	MTND4P12	1299	chr5:134263428:-	MTATP6P1	5627	chr1:569325:+	INCL_NON_REF_SPLICE	YES	41	3238	0.21	0	0.036	0.0961	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	0	0.21	0.1321	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	RP11-96H19.1--RP11-446N19.1	5	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0601	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SLR24_KIDNEY	1	1	0.0601	FALSE	515	4851	409	746	0	FALSE	ACH-000272
SLR24_KIDNEY	MTATP6P1--MTND2P28	3	7	MTATP6P1	1108	chr1:569183:+	MTND2P28	4904	chr1:565242:+	INCL_NON_REF_SPLICE	YES	1816	6063	0.01	0	0.036	0.0841	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SLR24_KIDNEY	0	0.01	0.1201	TRUE	20	3	0	12	0	FALSE	ACH-000272
SLR24_KIDNEY	VIM--hsa-mir-6723	3	6	VIM	6853	chr10:17277241:+	hsa-mir-6723	12249	chr1:566498:+	INCL_NON_REF_SPLICE	YES	7228	0	0	1	0.036	0.0721	VIM->chr10:17270258-17279592:+,vimentin,hsa-mir-6723->chr1:566454-567996:+	SLR24_KIDNEY	0	1	0.1081	TRUE	0	0	0	1	0	FALSE	ACH-000272
SLR24_KIDNEY	MT-TA--MT-TY	4	1	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0.012	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SLR24_KIDNEY	1	1	0.0601	FALSE	13	214	14	42	0	FALSE	ACH-000272
SLR24_KIDNEY	MTATP6P1--MTND2P28	3	5	MTATP6P1	1149	chr1:569224:+	MTND2P28	5404	chr1:565742:+	INCL_NON_REF_SPLICE	YES	4255	1333	0	0.01	0.036	0.0601	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SLR24_KIDNEY	0	0.01	0.0961	FALSE	20	3	0	12	0	FALSE	ACH-000272
SLR24_KIDNEY	hsa-mir-6723--MTND2P28	4	1	hsa-mir-6723	1567	chr1:567020:+	MTND2P28	5598	chr1:565074:+	INCL_NON_REF_SPLICE	YES	2443	0	0	1	0.0481	0.012	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SLR24_KIDNEY	0	1	0.0601	FALSE	2	1	0	4	0	FALSE	ACH-000272
SLR24_KIDNEY	hsa-mir-6723--MTND2P28	4	1	hsa-mir-6723	1535	chr1:566988:+	MTND2P28	5811	chr1:565287:+	INCL_NON_REF_SPLICE	YES	2468	4427	0	0	0.0481	0.012	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SLR24_KIDNEY	0	0	0.0601	FALSE	2	1	0	4	0	FALSE	ACH-000272
SLR24_KIDNEY	MTATP6P1--MTND2P28	4	0	MTATP6P1	1128	chr1:569203:+	MTND2P28	5356	chr1:565694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SLR24_KIDNEY	1	1	0.0481	TRUE	20	3	0	12	0	FALSE	ACH-000272
SLR24_KIDNEY	MTATP6P1--MTND2P28	4	0	MTATP6P1	1078	chr1:569153:+	MTND2P28	5091	chr1:565429:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SLR24_KIDNEY	1	1	0.0481	TRUE	20	3	0	12	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	4	0	MTND4P12	1216	chr5:134263511:-	MTATP6P1	5778	chr1:569476:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	1	1	0.0481	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	4	0	MTND4P12	1239	chr5:134263488:-	MTATP6P1	5665	chr1:569363:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	1	1	0.0481	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	NRIP1--AF127936.7	2	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	32	0	0.22	1	0.024	0.0841	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR24_KIDNEY	0.22	1	0.1081	FALSE	164	806	69	479	0	FALSE	ACH-000272
SLR24_KIDNEY	MT-TA--MT-TY	3	1	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0.012	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SLR24_KIDNEY	1	1	0.048	FALSE	13	214	14	42	0	FALSE	ACH-000272
SLR24_KIDNEY	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	62	0.57	0.06	0.036	0.012	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SLR24_KIDNEY	0.06	0.57	0.048	FALSE	16	356	14	466	0	FALSE	ACH-000272
SLR24_KIDNEY	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	65	1	0.06	0.036	0.012	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SLR24_KIDNEY	0.06	1	0.048	TRUE	465	1949	224	605	0	FALSE	ACH-000272
SLR24_KIDNEY	SHISA9--U91319.1	1	9	SHISA9	9974	chr16:13297406:+	U91319.1	21484	chr16:13352190:+	ONLY_REF_SPLICE	YES	39	0	0.2	1	0.012	0.1081	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	SLR24_KIDNEY	0.2	1	0.1201	FALSE	0	14	0	12	0	FALSE	ACH-000272
SLR24_KIDNEY	MTATP6P1--MTND2P28	3	0	MTATP6P1	1128	chr1:569203:+	MTND2P28	5353	chr1:565691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SLR24_KIDNEY	1	1	0.036	TRUE	20	3	0	12	0	FALSE	ACH-000272
SLR24_KIDNEY	MTATP6P1--MTND2P28	3	0	MTATP6P1	1109	chr1:569184:+	MTND2P28	5532	chr1:565870:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SLR24_KIDNEY	1	1	0.036	TRUE	20	3	0	12	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	3	0	MTND4P12	1234	chr5:134263493:-	MTATP6P1	5772	chr1:569470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	1	1	0.036	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MTND4P12--MTATP6P1	3	0	MTND4P12	1239	chr5:134263488:-	MTATP6P1	5657	chr1:569355:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SLR24_KIDNEY	1	1	0.036	TRUE	27	31	5	8	0	FALSE	ACH-000272
SLR24_KIDNEY	MYADM--LDHA	3	0	MYADM	6339	chr19:54377615:+	LDHA	11593	chr11:18416112:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	MYADM->chr19:54369477-54379691:+,myeloid-associated_differentiation_marker,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	SLR24_KIDNEY	1	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000272
SLR24_KIDNEY	PSPH--GBAS	2	1	PSPH	1467	chr7:56118831:-	GBAS	22080	chr7:56049903:+	ONLY_REF_SPLICE	YES	87	155	0.03	0.02	0.024	0.012	LOCAL_INVERSION:-:+:[10870],PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase,GBAS->chr7:56019486-56067874:+,glioblastoma_amplified_sequence	SLR24_KIDNEY	0.02	0.03	0.036	TRUE	0	0	0	3	0	FALSE	ACH-000272
SLR24_KIDNEY	ACOX3--HSPA14	2	0	ACOX3	1076	chr4:8442375:-	HSPA14	30640	chr10:14890608:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	ACOX3->acyl-CoA_oxidase_3,_pristanoyl,chr4:8368009-8442450:-,HSPA14->chr10:14880163-14913740:+,heat_shock_protein_family_A_(Hsp70)_member_14	SLR24_KIDNEY	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000272
SLR24_KIDNEY	EXT2--HTATIP2	2	0	EXT2	12956	chr11:44151688:+	HTATIP2	30240	chr11:20398126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2,HTATIP2->HIV-1_Tat_interactive_protein_2,Oncogene{Bushman},chr11:20385231-20405329:+	SLR24_KIDNEY	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000272
SLR24_KIDNEY	MATR3--UBE2D2	2	0	MATR3	3802	chr5:138614097:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	SLR24_KIDNEY	1	1	0.024	TRUE	0	1	0	2	1	TRUE	ACH-000272
SLR24_KIDNEY	NRIP1--AF127936.7	1	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.16	1	0.012	0.0481	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR24_KIDNEY	0.16	1	0.0601	FALSE	125	705	46	456	0	FALSE	ACH-000272
SLR24_KIDNEY	NXN--GEMIN4	2	0	NXN	1452	chr17:882559:-	GEMIN4	28614	chr17:651272:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	NEIGHBORS[45314],NXN->chr17:702553-883010:-,nucleoredoxin,GEMIN4->chr17:647654-657239:-,gem_nuclear_organelle_associated_protein_4	SLR24_KIDNEY	1	1	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000272
SLR24_KIDNEY	RCC1--MIPEP	2	0	RCC1	2175	chr1:28834672:+	MIPEP	36804	chr13:24380208:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MIPEP->chr13:24304328-24463558:-,mitochondrial_intermediate_peptidase	SLR24_KIDNEY	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000272
SLR24_KIDNEY	RP4-565E6.1--HYDIN	1	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.012	0.0481	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SLR24_KIDNEY	1	1	0.0601	TRUE	456	1387	91	133	0	FALSE	ACH-000272
SLR24_KIDNEY	RP11-680G10.1--GSE1	1	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	27	1	0.13	0.012	0.036	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SLR24_KIDNEY	0.13	1	0.048	TRUE	458	1351	185	561	0	FALSE	ACH-000272
SLR24_KIDNEY	PPP1R9A--PEG10	1	2	PPP1R9A	7258	chr7:94750144:+	PEG10	34619	chr7:94292646:+	ONLY_REF_SPLICE	YES	46	2295	0.06	0	0.012	0.024	PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A,PEG10->Oncogene{Bushman},chr7:94285637-94299007:+,paternally_expressed_10	SLR24_KIDNEY	0	0.06	0.036	FALSE	0	0	0	1	0	FALSE	ACH-000272
SLR24_KIDNEY	PPP1R9A--PEG10	1	2	PPP1R9A	10565	chr7:94833042:+	PEG10	34619	chr7:94292646:+	ONLY_REF_SPLICE	YES	54	2295	0.05	0	0.012	0.024	PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A,PEG10->Oncogene{Bushman},chr7:94285637-94299007:+,paternally_expressed_10	SLR24_KIDNEY	0	0.05	0.036	FALSE	0	0	0	1	0	FALSE	ACH-000272
SLR24_KIDNEY	ZNF738--CHMP1A	1	2	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	48	520	0.06	0.01	0.012	0.024	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SLR24_KIDNEY	0.01	0.06	0.036	FALSE	1	20	1	28	3	FALSE	ACH-000272
SLR24_KIDNEY	ARGLU1--USO1	1	1	ARGLU1	5586	chr13:107209396:-	USO1	25958	chr4:76720775:+	ONLY_REF_SPLICE	YES	361	135	0.01	0.01	0.012	0.012	ARGLU1->arginine_and_glutamate_rich_1,chr13:107194021-107220512:-,USO1->USO1_vesicle_transport_factor,chr4:76649777-76735382:+	SLR24_KIDNEY	0.01	0.01	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000272
SLR24_KIDNEY	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.012	0.012	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SLR24_KIDNEY	1	1	0.024	FALSE	93	270	15	244	0	FALSE	ACH-000272
SLR24_KIDNEY	UGGT1--RPS4X	1	1	UGGT1	21101	chr2:128903541:+	RPS4X	56824	chrX:71493822:-	ONLY_REF_SPLICE	YES	167	6384	0.01	0	0.012	0.012	UGGT1->UDP-glucose_glycoprotein_glucosyltransferase_1,chr2:128848774-128953251:+,RPS4X->chrX:71475529-71497150:-,ribosomal_protein_S4,_X-linked	SLR24_KIDNEY	0	0.01	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000272
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--ITGAL	2134	5	RP11-1143G9.4	1649	chr12:69747357:-	ITGAL	31208	chr16:30534198:+	INCL_NON_REF_SPLICE	YES	26	442	0.99	0.83	27.2218	0.0638	RP11-1143G9.4->chr12:69747273-69748005:-,ITGAL->chr16:30483979-30534506:+,integrin_subunit_alpha_L	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.99	27.2856	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU2--RB1	339	247	DLEU2	1419	chr13:50699438:-	RB1	33995	chr13:49027129:+	ONLY_REF_SPLICE	YES	0	1	1	1	4.3244	3.1508	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	7.4752	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU1--LPAR6	62	55	DLEU1	2024	chr13:50657330:+	LPAR6	55359	chr13:48996926:-	ONLY_REF_SPLICE	YES	0	1	1	0.99	0.7909	0.7016	DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding),LPAR6->chr13:48963707-49018840:-,lysophosphatidic_acid_receptor_6	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.4925	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU1--LPAR6	47	44	DLEU1	1387	chr13:50656693:+	LPAR6	55359	chr13:48996926:-	ONLY_REF_SPLICE	YES	3	1	0.97	0.99	0.5995	0.5613	DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding),LPAR6->chr13:48963707-49018840:-,lysophosphatidic_acid_receptor_6	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	0.99	1.1608	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	48	26	KMT2A	18437	chr11:118355690:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	3	1	0.96	0.99	0.6123	0.3317	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.99	0.944	TRUE	0	0	0	4	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	45	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.574	0.0255	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5995	FALSE	462	80	0	856	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	43	10	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5485	0.1276	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6761	TRUE	508	994	45	981	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	28	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3572	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3572	FALSE	499	1288	110	792	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	25	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3189	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3189	TRUE	519	3926	326	965	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU1--LPAR6	7	57	DLEU1	2024	chr13:50657330:+	LPAR6	54232	chr13:48998255:-	ONLY_REF_SPLICE	YES	0	1	1	0.98	0.0893	0.7271	DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding),LPAR6->chr13:48963707-49018840:-,lysophosphatidic_acid_receptor_6	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.8164	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	20	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.2551	0.0638	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.3189	FALSE	499	1288	110	792	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	15	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	99	24	0.24	0.56	0.1913	0.2041	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.56	0.3954	TRUE	267	562	48	632	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	19	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2424	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2424	TRUE	0	0	0	518	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	18	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2296	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2296	FALSE	499	1288	110	792	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	10	11	KMT2A	17776	chr11:118355029:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	10	1	0.68	0.95	0.1276	0.1403	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	0.95	0.2679	TRUE	0	0	0	4	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	11	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.86	1	0.1403	0.0893	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.2296	FALSE	515	4851	409	746	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1143G9.4--ITGAL	8	10	RP11-1143G9.4	1489	chr12:69747517:-	ITGAL	31060	chr16:30534050:+	INCL_NON_REF_SPLICE	YES	6128	667	0	0.03	0.102	0.1276	RP11-1143G9.4->chr12:69747273-69748005:-,ITGAL->chr16:30483979-30534506:+,integrin_subunit_alpha_L	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.2296	TRUE	0	0	0	1	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	9	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	8973	3	0	0.77	0.1148	0.0128	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.77	0.1276	FALSE	230	193	14	283	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	8	4	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10597	56	0	0.18	0.102	0.051	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.18	0.153	FALSE	231	217	16	283	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	8	4	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	256	1	0.04	0.92	0.102	0.051	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.92	0.153	TRUE	61	154	6	19	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	6	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	95	25	0.15	0.4	0.0765	0.1403	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.4	0.2168	TRUE	267	562	48	632	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.102	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.102	FALSE	462	80	0	856	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0893	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0893	TRUE	1	39	0	134	39	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	10	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	2	0	0.88	1	0.051	0.1276	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.1786	FALSE	209	205	15	279	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0638	0.0383	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1021	FALSE	462	80	0	856	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.051	0.0893	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	0.1403	FALSE	407	2205	196	549	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	4	6	RP11-353N4.6	10962	chr1:149615951:+	RP11-403I13.4	15135	chr1:149239868:+	INCL_NON_REF_SPLICE	YES	427	1	0.02	0.91	0.051	0.0765	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.91	0.1275	TRUE	15	45	2	3	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU1--LPAR6	1	17	DLEU1	2024	chr13:50657330:+	LPAR6	56503	chr13:48991456:-	ONLY_REF_SPLICE	YES	0	30	1	0.38	0.0128	0.2169	DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding),LPAR6->chr13:48963707-49018840:-,lysophosphatidic_acid_receptor_6	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.2297	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0638	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0638	FALSE	292	1546	117	613	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	7	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	NO	10959	0	0	1	0.0383	0.0893	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1276	FALSE	231	217	16	283	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	7	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.77	1	0.0383	0.0893	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.1276	FALSE	499	1288	110	792	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLSCR4--CEP19	4	3	PLSCR4	1220	chr3:145968747:-	CEP19	18348	chr3:196435598:-	ONLY_REF_SPLICE	YES	0	25	1	0.22	0.051	0.0383	PLSCR4->chr3:145910126-145968966:-,phospholipid_scramblase_4,CEP19->centrosomal_protein_19,chr3:196433148-196439164:-	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.0893	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	5	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	10404	0	0	1	0.0383	0.0638	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1021	FALSE	231	217	16	283	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10516	9	0	0.36	0.051	0.0128	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.36	0.0638	FALSE	231	205	14	283	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LMNA--SIAE	4	0	LMNA	15311	chr1:156104737:+	SIAE	32446	chr11:124524604:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.051	0	LMNA->chr1:156052364-156109880:+,lamin_A/C,SIAE->chr11:124503009-124565603:-,sialic_acid_acetylesterase	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.051	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.051	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.051	FALSE	230	193	14	283	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0255	0.102	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.1275	FALSE	275	511	55	178	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLSCR4--CEP19	3	3	PLSCR4	1220	chr3:145968747:-	CEP19	18351	chr3:196435595:-	INCL_NON_REF_SPLICE	YES	0	24	1	0.2	0.0383	0.0383	PLSCR4->chr3:145910126-145968966:-,phospholipid_scramblase_4,CEP19->centrosomal_protein_19,chr3:196433148-196439164:-	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.0766	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1117	chrM:8643:+	MT-CO1	5181	chrM:6403:+	INCL_NON_REF_SPLICE	NO	7902	14974	0	0	0.0383	0.0255	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0638	FALSE	183	104	9	328	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0.0255	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0638	FALSE	462	80	0	856	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	2	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0.0255	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0638	FALSE	462	80	0	856	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	7942	17098	0	0	0.0383	0.0128	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0511	FALSE	183	104	9	328	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8098	17396	0	0	0.0383	0.0128	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0511	FALSE	183	104	9	328	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8965	9	0	0.31	0.0383	0.0128	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.31	0.0511	FALSE	230	198	14	283	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9036	56	0	0.07	0.0383	0.0128	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0511	FALSE	230	198	14	283	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LASP1--MT-ND4L	3	0	LASP1	9092	chr17:37070720:+	MT-ND4L	18630	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0383	FALSE	0	0	0	1	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0383	FALSE	230	191	14	283	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0383	FALSE	499	1288	110	792	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0383	TRUE	22	156	2	142	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	2	4	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	NO	277	1	0.02	0.86	0.0255	0.051	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.86	0.0765	TRUE	61	154	6	19	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGFR2--COL14A1	2	1	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0.0128	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0383	TRUE	0	0	0	32	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU1--LPAR6	2	0	DLEU1	2024	chr13:50657330:+	LPAR6	65560	chr13:48963948:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding),LPAR6->chr13:48963707-49018840:-,lysophosphatidic_acid_receptor_6	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	TRUE	0	0	0	1	0	TRUE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	1	3	RP11-353N4.6	1087	chr1:149575568:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	35	1	0.1	0.8	0.0128	0.0383	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.8	0.0511	TRUE	0	12	0	1	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00926--TCF12	1	1	LINC00926	1560	chr15:57593122:+	TCF12	27091	chr15:57523350:+	ONLY_REF_SPLICE	YES	663	57	0	0.03	0.0128	0.0128	LOCAL_REARRANGEMENT:+:[1084],LINC00926->chr15:57592563-57599959:+,long_intergenic_non-protein_coding_RNA_926,TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MFI2--MFSD10	1	1	MFI2	1163	chr3:196756525:-	MFSD10	26966	chr4:2935671:-	ONLY_REF_SPLICE	YES	89	258	0.02	0.01	0.0128	0.0128	MFI2->chr3:196715492-196756687:-,MFSD10->chr4:2932288-2936586:-,major_facilitator_superfamily_domain_containing_10	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0128	0.0128	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0256	FALSE	164	806	69	479	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RB1--DLEU2	1	1	RB1	17872	chr13:48955579:+	DLEU2	36768	chr13:50649789:-	ONLY_REF_SPLICE	NO	1	56	0.67	0.03	0.0128	0.0128	RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding)	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.67	0.0256	TRUE	0	0	0	1	0	FALSE	ACH-001129
MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	1	1	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	277	4	0.01	0.33	0.0128	0.0128	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	MONOMAC1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.33	0.0256	FALSE	30	67	4	15	0	FALSE	ACH-001129
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-33--AC096579.7	101	1978	IGKV1-33	1293	chr2:89567971:-	AC096579.7	7228	chr2:89157196:-	INCL_NON_REF_SPLICE	YES	2720	0	0.43	1	0.9656	18.91	GTEx_FI:{Esophagus=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6]},IGKV1-33->chr2:89567758-89568263:-,immunoglobulin_kappa_variable_1-33,AC096579.7->chr2:89130700-89165653:-	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	19.8756	TRUE	2	11	0	1	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	173	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.6539	0.2677	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.9216	TRUE	508	994	45	981	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	109	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	115	2	0.49	0.98	1.0421	0.0096	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.98	1.0517	TRUE	519	3926	326	965	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	45	40	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	97	20	0.47	0.81	0.4302	0.3824	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.81	0.8126	TRUE	267	562	48	632	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	20	115	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	2519	0	0.05	1	0.1912	1.0994	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	1.2906	FALSE	344	827	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	168	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	9	0	0.95	1	0.0382	1.6061	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	1.6443	FALSE	344	826	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	44	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4206	0.0574	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.478	FALSE	462	80	0	856	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	164	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	3	0	0.98	1	0.0287	1.5679	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	1.5966	FALSE	344	826	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	9	122	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.98	1	0.086	1.1663	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	1.2523	FALSE	344	821	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	28	25	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	93	21	0.36	0.72	0.2677	0.239	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.72	0.5067	TRUE	267	562	48	632	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	116	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	8	0	0.94	1	0.0287	1.109	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	1.1377	FALSE	344	827	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	114	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	4	0	0.97	1	0.0287	1.0899	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	1.1186	FALSE	344	826	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	112	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	NO	8	0	0.93	1	0.0287	1.0707	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	1.0994	FALSE	344	826	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC069363.1--AC096579.7	29	4	AC069363.1	8551	chr17:34417372:+	AC096579.7	14555	chr2:89157022:-	INCL_NON_REF_SPLICE	YES	269	4788	0.11	0.01	0.2772	0.0382	AC069363.1->chr17:34400226-34417480:+,AC096579.7->chr2:89130700-89165653:-	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.11	0.3154	TRUE	0	0	0	3	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC069363.1--AC096579.7	28	7	AC069363.1	8564	chr17:34417385:+	AC096579.7	14568	chr2:89157009:-	INCL_NON_REF_SPLICE	YES	5	5161	0.88	0.01	0.2677	0.0669	AC069363.1->chr17:34400226-34417480:+,AC096579.7->chr2:89130700-89165653:-	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.88	0.3346	TRUE	0	0	0	3	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	89	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	11	1	0.89	0.99	0.0287	0.8509	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.99	0.8796	FALSE	344	826	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	13	47	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	6867	0	0.01	1	0.1243	0.4493	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.5736	FALSE	328	800	43	304	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBG1	22	0	AC104389.28	1084	chr11:5526799:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2103	0	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2103	FALSE	0	1	0	13	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	10	45	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	11	0	0.83	1	0.0956	0.4302	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.5258	FALSE	344	826	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	20	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1912	0.0478	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.239	FALSE	499	1288	110	792	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	19	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1816	0.0574	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.239	FALSE	499	1288	110	792	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	19	3	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1816	0.0287	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2103	FALSE	46	201	11	112	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	47	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	187	0	0.22	1	0.0669	0.4493	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.5162	FALSE	344	827	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	51	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	3	1	0.95	0.98	0.0382	0.4876	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	0.98	0.5258	FALSE	344	821	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	16	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2039	0	0.01	1	0.153	0.0191	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1721	FALSE	13	9	0	364	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	30	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	3734	0	0.01	1	0.0765	0.2868	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.3633	FALSE	344	827	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	50	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.478	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5067	FALSE	344	821	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	14	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1338	0.0574	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1912	FALSE	462	80	0	856	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	47	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	2299	0	0.02	1	0.0287	0.4493	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.478	FALSE	344	827	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1052	0.1434	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2486	FALSE	499	1288	110	792	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	46	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	7	0	0.88	1	0.0287	0.4398	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.4685	FALSE	344	827	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	45	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	11	0	0.81	1	0.0287	0.4302	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.4589	FALSE	344	826	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	45	MT-ND4	1201	chrM:10960:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	10	0	0.83	1	0.0287	0.4302	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.4589	FALSE	344	826	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	12	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2051	0	0.01	1	0.1147	0.0191	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1338	FALSE	13	9	0	364	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	30	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	7	0	0.83	1	0.0382	0.2868	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.325	FALSE	344	827	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	25	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	93	21	0.24	0.59	0.0478	0.239	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.59	0.2868	TRUE	267	562	48	632	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	17	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	8	0	0.74	1	0.0574	0.1625	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	0.2199	FALSE	344	827	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	23	MT-ND4	1093	chrM:10852:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0287	0.2199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.2486	FALSE	344	826	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	18	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0287	0.1721	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.2008	FALSE	344	826	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.1625	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1912	FALSE	499	1288	110	792	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL18--TMSB4X	7	1	RPL18	4351	chr19:49119443:-	TMSB4X	8235	chrX:12993252:+	INCL_NON_REF_SPLICE	YES	2175	0	0	1	0.0669	0.0096	RPL18->chr19:49118585-49122793:-,ribosomal_protein_L18,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0765	FALSE	0	0	0	4	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	7	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0669	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0669	FALSE	0	0	0	189	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	15	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.0287	0.1434	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.1721	FALSE	499	1288	110	792	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL18--TMSB4X	6	1	RPL18	4358	chr19:49119436:-	TMSB4X	8242	chrX:12993259:+	INCL_NON_REF_SPLICE	YES	2031	0	0	1	0.0574	0.0096	RPL18->chr19:49118585-49122793:-,ribosomal_protein_L18,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.067	FALSE	0	0	0	4	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	6	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0574	TRUE	22	156	2	142	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	5	1	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0478	0.0096	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0574	TRUE	13	49	2	38	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL18--TMSB4X	5	1	RPL18	3813	chr19:49119981:-	TMSB4X	8221	chrX:12993238:+	INCL_NON_REF_SPLICE	YES	2734	0	0	1	0.0478	0.0096	RPL18->chr19:49118585-49122793:-,ribosomal_protein_L18,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0574	FALSE	0	0	0	4	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-ND2	4	3	IGH@	110149	chr14:106208265:-	MT-ND2	132209	chrM:4877:+	INCL_NON_REF_SPLICE	YES	2616	6987	0	0	0.0382	0.0287	IGH@->Oncogene{Bushman},MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0669	FALSE	0	7	0	2	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	7	MT-TA	1063	chrM:5593:-	MT-TC	4102	chrM:5794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.0669	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0956	FALSE	462	80	0	856	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	6	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.0574	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0861	FALSE	499	1288	110	792	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	6	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.0574	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0861	FALSE	499	1288	110	792	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC069363.1--AC096579.7	3	5	AC069363.1	8545	chr17:34417366:+	AC096579.7	14549	chr2:89157028:-	INCL_NON_REF_SPLICE	YES	360	4840	0.02	0	0.0287	0.0478	AC069363.1->chr17:34400226-34417480:+,AC096579.7->chr2:89130700-89165653:-	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0765	FALSE	0	0	0	3	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0382	FALSE	499	1288	110	792	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	4	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0382	TRUE	477	1352	189	275	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD74--IGH@	3	3	CD74	7246	chr5:149781774:-	IGH@	119968	chr14:106208266:-	INCL_NON_REF_SPLICE	YES	4358	2600	0	0	0.0287	0.0287	CD74->CD74_molecule,Oncogene{Bushman},chr5:149781200-149792492:-,IGH@->Oncogene{Bushman}	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0574	FALSE	0	0	0	2	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD74--IGH@	3	2	CD74	2456	chr5:149786737:-	IGH@	120248	chr14:106207986:-	INCL_NON_REF_SPLICE	YES	5256	1863	0	0	0.0287	0.0191	CD74->CD74_molecule,Oncogene{Bushman},chr5:149781200-149792492:-,IGH@->Oncogene{Bushman}	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0478	FALSE	0	0	0	1	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.0191	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0478	FALSE	344	821	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LENG8--MT-ATP6	3	1	LENG8	6197	chr19:54965805:+	MT-ATP6	17010	chrM:8927:+	INCL_NON_REF_SPLICE	YES	197	7722	0.02	0	0.0287	0.0096	LENG8->chr19:54960065-54973217:+,leukocyte_receptor_cluster_(LRC)_member_8,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0383	FALSE	0	0	0	2	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00158--AP000233.4	3	1	LINC00158	5017	chr21:26793020:-	AP000233.4	12117	chr21:26547759:-	ONLY_REF_SPLICE	YES	62	0	0.06	1	0.0287	0.0096	NEIGHBORS[51994],LINC00158->chr21:26758133-26804013:-,long_intergenic_non-protein_coding_RNA_158,AP000233.4->chr21:26541745-26706139:-	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0383	FALSE	0	1	0	4	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0287	FALSE	344	821	44	306	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0287	FALSE	462	80	0	856	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	2	3	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	7991	chr5:96856933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0.0287	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0478	FALSE	0	1	1	12	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	31	0	0.09	1	0.0191	0.0096	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.0287	FALSE	272	151	14	158	0	FALSE	ACH-000038
EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--PIAS2	1	1	CHD2	30912	chr15:93518180:+	PIAS2	80465	chr18:44401035:-	ONLY_REF_SPLICE	NO	45	23	0.04	0.08	0.0096	0.0096	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,PIAS2->chr18:44388353-44500123:-,protein_inhibitor_of_activated_STAT_2	EHEB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.08	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000038
HS742T_FIBROBLAST	FN1--COL1A1	477	14	FN1	36954	chr2:216243980:-	COL1A1	69586	chr17:48264124:-	INCL_NON_REF_SPLICE	YES	20069	17249	0.02	0.03	6.0915	0.1788	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS742T_FIBROBLAST	0.02	0.03	6.2703	TRUE	0	0	0	13	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ATP8--MT-CO1	97	1	MT-ATP8	1147	chrM:8512:+	MT-CO1	4513	chrM:6209:+	INCL_NON_REF_SPLICE	NO	0	23586	1	0	1.2387	0.0128	LOCAL_REARRANGEMENT:+:[921],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS742T_FIBROBLAST	0	1	1.2515	FALSE	3	1	0	9	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-TA--MT-TN	77	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9833	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS742T_FIBROBLAST	1	1	0.9833	FALSE	369	2501	205	193	0	FALSE	ACH-000230
HS742T_FIBROBLAST	TIMM23B--LINC00843	67	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8556	0.2937	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS742T_FIBROBLAST	1	1	1.1493	TRUE	508	994	45	981	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	58	47	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	0	15	1	0.88	0.7407	0.6002	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS742T_FIBROBLAST	0.88	1	1.3409	FALSE	65	26	15	9	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND6--MT-ND5	56	8	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	4521	1	0.01	0.7151	0.1022	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS742T_FIBROBLAST	0.01	1	0.8173	FALSE	101	855	57	72	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-TA--MT-TC	53	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6768	0.0766	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS742T_FIBROBLAST	1	1	0.7534	FALSE	462	80	0	856	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND6--MT-TE	52	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6641	0.0255	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS742T_FIBROBLAST	1	1	0.6896	FALSE	499	1288	110	792	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	6	166	COL1A1	14310	chr17:48265465:-	FN1	22230	chr2:216300791:-	INCL_NON_REF_SPLICE	YES	18595	0	0.01	1	0.0766	2.1199	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0.01	1	2.1965	TRUE	0	0	0	7	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	4	167	COL1A1	14314	chr17:48265461:-	FN1	22235	chr2:216300786:-	INCL_NON_REF_SPLICE	YES	18884	0	0.01	1	0.0511	2.1327	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0.01	1	2.1838	TRUE	0	0	0	7	0	FALSE	ACH-000230
HS742T_FIBROBLAST	TIMM23--RP11-464F9.1	43	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	150	0	0.24	1	0.5491	0.0511	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS742T_FIBROBLAST	0.24	1	0.6002	TRUE	519	3926	326	965	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	3	157	COL1A1	14908	chr17:48264867:-	FN1	22311	chr2:216300710:-	INCL_NON_REF_SPLICE	YES	17708	39	0.01	0.8	0.0383	2.005	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0.01	0.8	2.0433	TRUE	0	0	0	7	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	15	84	COL1A1	15650	chr17:48264125:-	FN1	58080	chr2:216243979:-	INCL_NON_REF_SPLICE	YES	17315	20105	0.01	0	0.1916	1.0727	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	0.01	1.2643	TRUE	0	0	0	18	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND6--MT-TE	31	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.3959	0.2043	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS742T_FIBROBLAST	0.96	1	0.6002	FALSE	499	1288	110	792	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND4--MT-ND4L	5	116	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	18	0	0.87	1	0.0639	1.4814	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS742T_FIBROBLAST	0.87	1	1.5453	FALSE	344	826	44	306	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	23	41	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	0	18	1	0.78	0.2937	0.5236	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS742T_FIBROBLAST	0.78	1	0.8173	FALSE	65	26	15	9	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND4--MT-ND4L	3	120	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	62	0	0.66	1	0.0383	1.5325	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS742T_FIBROBLAST	0.66	1	1.5708	FALSE	344	826	44	306	0	FALSE	ACH-000230
HS742T_FIBROBLAST	FN1--COL1A1	28	16	FN1	12511	chr2:216285416:-	COL1A1	54970	chr17:48278959:-	INCL_NON_REF_SPLICE	YES	16191	0	0	1	0.3576	0.2043	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS742T_FIBROBLAST	0	1	0.5619	TRUE	0	0	0	5	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	7	96	COL1A1	12718	chr17:48267057:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	22024	12588	0	0.01	0.0894	1.226	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	0.01	1.3154	TRUE	0	0	0	17	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND4--MT-ND4L	9	85	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	9	0	0.91	1	0.1149	1.0855	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS742T_FIBROBLAST	0.91	1	1.2004	FALSE	344	821	44	306	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND4--MT-ND4L	6	83	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	20	0	0.82	1	0.0766	1.0599	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS742T_FIBROBLAST	0.82	1	1.1365	FALSE	344	826	44	306	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	3	92	COL1A1	12074	chr17:48267701:-	FN1	22244	chr2:216300777:-	INCL_NON_REF_SPLICE	YES	21384	0	0	1	0.0383	1.1749	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	1	1.2132	TRUE	0	0	0	17	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND6--MT-ND5	23	7	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	4377	1	0.01	0.2937	0.0894	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS742T_FIBROBLAST	0.01	1	0.3831	FALSE	101	855	57	72	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	3	82	COL1A1	13017	chr17:48266758:-	FN1	37254	chr2:216274682:-	INCL_NON_REF_SPLICE	NO	19148	14322	0	0.01	0.0383	1.0472	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	0.01	1.0855	FALSE	0	0	0	1	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND4--MT-ND4L	3	81	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	149	0	0.36	1	0.0383	1.0344	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS742T_FIBROBLAST	0.36	1	1.0727	FALSE	344	827	44	306	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-TA--MT-TN	23	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2937	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS742T_FIBROBLAST	1	1	0.2937	FALSE	369	2501	205	193	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-TA--MT-TN	9	53	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1149	0.6768	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS742T_FIBROBLAST	1	1	0.7917	FALSE	369	2501	205	193	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	6	58	COL1A1	9381	chr17:48270394:-	FN1	26925	chr2:216295503:-	INCL_NON_REF_SPLICE	YES	20936	15551	0	0	0.0766	0.7407	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	0	0.8173	TRUE	0	0	0	8	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND4--MT-ND4L	3	70	MT-ND4	1060	chrM:10819:+	MT-ND4L	5532	chrM:10623:+	INCL_NON_REF_SPLICE	YES	4	0	0.95	1	0.0383	0.8939	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS742T_FIBROBLAST	0.95	1	0.9322	FALSE	344	821	44	306	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	3	69	COL1A1	14920	chr17:48264855:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	18029	22052	0	0	0.0383	0.8812	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	0	0.9195	TRUE	0	0	0	10	0	FALSE	ACH-000230
HS742T_FIBROBLAST	NRIP1--AF127936.7	20	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	1	0.95	0.95	0.2554	0.0128	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS742T_FIBROBLAST	0.95	0.95	0.2682	FALSE	292	1546	117	613	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	8	46	COL1A1	12982	chr17:48266793:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	19118	22052	0	0	0.1022	0.5874	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	0	0.6896	TRUE	0	0	0	17	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND6--MT-TE	19	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2426	0.0255	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS742T_FIBROBLAST	1	1	0.2681	FALSE	499	1288	110	792	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	5	57	COL1A1	13456	chr17:48266319:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	18502	22052	0	0	0.0639	0.7279	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	0	0.7918	TRUE	0	0	0	16	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-680G10.1--GSE1	18	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	4	1	0.83	0.2299	0.0128	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS742T_FIBROBLAST	0.83	1	0.2427	TRUE	465	1949	224	605	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--TGFBI	8	40	COL1A1	17579	chr17:48262196:-	TGFBI	29213	chr5:135384440:+	INCL_NON_REF_SPLICE	NO	5689	12241	0.01	0	0.1022	0.5108	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS742T_FIBROBLAST	0	0.01	0.613	FALSE	0	0	0	1	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-TA--MT-TN	6	48	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0766	0.613	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS742T_FIBROBLAST	1	1	0.6896	FALSE	369	2501	205	193	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND6--MT-ND5	15	5	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	2407	1	0.01	0.1916	0.0639	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS742T_FIBROBLAST	0.01	1	0.2555	FALSE	101	855	57	72	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND6--MT-TE	11	20	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.1405	0.2554	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS742T_FIBROBLAST	0.94	1	0.3959	FALSE	499	1288	110	792	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-TA--MT-TN	7	34	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0894	0.4342	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS742T_FIBROBLAST	1	1	0.5236	FALSE	369	2501	205	193	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	9	25	COL1A1	13242	chr17:48266533:-	FN1	63801	chr2:216236956:-	INCL_NON_REF_SPLICE	YES	19929	21409	0	0	0.1149	0.3193	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	0	0.4342	TRUE	0	0	0	8	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-TA--MT-TC	13	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.166	0.0766	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS742T_FIBROBLAST	1	1	0.2426	FALSE	462	80	0	856	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-TA--MT-TN	5	37	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0.4725	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS742T_FIBROBLAST	1	1	0.5364	FALSE	369	2501	205	193	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	9	20	COL1A1	7831	chr17:48271944:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	18351	22052	0	0	0.1149	0.2554	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	0	0.3703	TRUE	0	0	0	14	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND4--MT-ND4L	5	36	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0639	0.4597	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS742T_FIBROBLAST	0.95	1	0.5236	FALSE	344	821	44	306	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--TGFBI	9	19	COL1A1	9754	chr17:48270021:-	TGFBI	32416	chr5:135389742:+	INCL_NON_REF_SPLICE	YES	19086	10656	0	0	0.1149	0.2426	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS742T_FIBROBLAST	0	0	0.3575	TRUE	0	0	0	1	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-TA--MT-TN	10	15	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1277	0.1916	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS742T_FIBROBLAST	1	1	0.3193	FALSE	369	2501	205	193	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	3	40	COL1A1	12367	chr17:48267408:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	21157	22052	0	0	0.0383	0.5108	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	0	0.5491	TRUE	0	0	0	13	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--TGFBI	4	35	COL1A1	14528	chr17:48265247:-	TGFBI	32408	chr5:135389734:+	INCL_NON_REF_SPLICE	YES	17438	10948	0	0	0.0511	0.447	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS742T_FIBROBLAST	0	0	0.4981	TRUE	0	0	0	1	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	7	22	COL1A1	16066	chr17:48263709:-	FN1	65364	chr2:216235050:-	INCL_NON_REF_SPLICE	YES	18443	24261	0	0	0.0894	0.281	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	0	0.3704	TRUE	0	0	0	7	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-680G10.1--GSE1	11	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1405	0.0766	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS742T_FIBROBLAST	1	1	0.2171	TRUE	458	1351	185	561	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	5	29	COL1A1	6831	chr17:48272944:-	FN1	22524	chr2:216300497:-	INCL_NON_REF_SPLICE	YES	19027	11788	0	0	0.0639	0.3703	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	0	0.4342	TRUE	0	0	0	13	0	FALSE	ACH-000230
HS742T_FIBROBLAST	CTD-2337A12.1--CAST	12	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	29	1	0.31	0.1532	0.0128	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS742T_FIBROBLAST	0.31	1	0.166	TRUE	347	1186	183	220	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND6--MT-ND5	12	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1532	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS742T_FIBROBLAST	1	1	0.1532	FALSE	101	855	57	72	0	FALSE	ACH-000230
HS742T_FIBROBLAST	KANSL1--ARL17B	11	1	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	11	10	0.52	0.55	0.1405	0.0128	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HS742T_FIBROBLAST	0.52	0.55	0.1533	TRUE	181	1564	124	196	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	8	12	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	0	15	1	0.57	0.1022	0.1532	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS742T_FIBROBLAST	0.57	1	0.2554	FALSE	40	10	5	8	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	8	11	COL1A1	6259	chr17:48273516:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	20122	22052	0	0	0.1022	0.1405	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	0	0.2427	TRUE	0	0	0	10	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND6--MT-TE	3	30	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0.3831	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS742T_FIBROBLAST	1	1	0.4214	FALSE	499	1288	110	792	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND4--MT-ND4L	6	16	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	56	0	0.28	1	0.0766	0.2043	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS742T_FIBROBLAST	0.28	1	0.2809	FALSE	344	826	44	306	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-TA--MT-TN	3	28	MT-TA	1051	chrM:5605:-	MT-TN	4091	chrM:5708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0.3576	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS742T_FIBROBLAST	1	1	0.3959	FALSE	369	2501	205	193	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	4	23	COL1A1	7994	chr17:48271781:-	FN1	62623	chr2:216238134:-	INCL_NON_REF_SPLICE	YES	19514	24587	0	0	0.0511	0.2937	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	0	0.3448	TRUE	0	0	0	8	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND4--MT-ND4L	3	27	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	40	0	0.43	1	0.0383	0.3448	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS742T_FIBROBLAST	0.43	1	0.3831	FALSE	344	826	44	306	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-TA--MT-TN	4	20	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0.2554	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS742T_FIBROBLAST	1	1	0.3065	FALSE	369	2501	205	193	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--TGFBI	4	19	COL1A1	9749	chr17:48270026:-	TGFBI	32411	chr5:135389737:+	INCL_NON_REF_SPLICE	YES	19485	10830	0	0	0.0511	0.2426	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS742T_FIBROBLAST	0	0	0.2937	TRUE	0	0	0	1	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-CO1--COL3A1	8	1	MT-CO1	1605	chrM:6508:+	COL3A1	28798	chr2:189872273:+	INCL_NON_REF_SPLICE	YES	27040	10235	0	0	0.1022	0.0128	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	HS742T_FIBROBLAST	0	0	0.115	FALSE	0	0	0	12	0	FALSE	ACH-000230
HS742T_FIBROBLAST	SERPINE1--TIMP1	8	1	SERPINE1	8383	chr7:100780300:+	TIMP1	14733	chrX:47442814:+	INCL_NON_REF_SPLICE	YES	17322	151	0	0.06	0.1022	0.0128	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,TIMP1->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_1,chrX:47441712-47446188:+	HS742T_FIBROBLAST	0	0.06	0.115	TRUE	0	0	0	1	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--SPARC	8	0	COL1A1	2564	chr17:48277211:-	SPARC	29508	chr5:151051220:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1022	0	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS742T_FIBROBLAST	1	1	0.1022	TRUE	0	0	0	3	0	TRUE	ACH-000230
HS742T_FIBROBLAST	MT-ATP8--MT-CO1	8	0	MT-ATP8	1063	chrM:8428:+	MT-CO1	4850	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1022	0	LOCAL_REARRANGEMENT:+:[921],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS742T_FIBROBLAST	1	1	0.1022	FALSE	3	1	0	9	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND4--MT-ND4L	4	16	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	4	0	0.83	1	0.0511	0.2043	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS742T_FIBROBLAST	0.83	1	0.2554	FALSE	344	821	44	306	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND4--MT-ND4L	3	20	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	129	0	0.15	1	0.0383	0.2554	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS742T_FIBROBLAST	0.15	1	0.2937	FALSE	344	827	44	306	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	5	11	COL1A1	6258	chr17:48273517:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	20080	22052	0	0	0.0639	0.1405	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	0	0.2044	TRUE	0	0	0	10	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--TGFBI	3	19	COL1A1	9747	chr17:48270028:-	TGFBI	32409	chr5:135389735:+	INCL_NON_REF_SPLICE	YES	19491	10927	0	0	0.0383	0.2426	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS742T_FIBROBLAST	0	0	0.2809	TRUE	0	0	0	1	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-334E6.12--MT2A	5	11	RP11-334E6.12	2039	chr11:119289699:+	MT2A	5557	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	242	3	0.06	0.84	0.0639	0.1405	RP11-334E6.12->chr11:119288661-119289824:+,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS742T_FIBROBLAST	0.06	0.84	0.2044	TRUE	0	0	0	7	0	TRUE	ACH-000230
HS742T_FIBROBLAST	THBS1--TGFBI	7	3	THBS1	13986	chr15:39886312:+	TGFBI	27631	chr5:135382642:+	INCL_NON_REF_SPLICE	YES	8532	11516	0	0	0.0894	0.0383	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS742T_FIBROBLAST	0	0	0.1277	TRUE	0	0	0	1	0	FALSE	ACH-000230
HS742T_FIBROBLAST	NRIP1--AF127936.7	6	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	19	1	0.39	0.92	0.0766	0.0766	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS742T_FIBROBLAST	0.39	0.92	0.1532	FALSE	164	806	69	479	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--SPARC	3	17	COL1A1	12958	chr17:48266817:-	SPARC	31839	chr5:151047095:-	INCL_NON_REF_SPLICE	YES	20118	15991	0	0	0.0383	0.2171	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS742T_FIBROBLAST	0	0	0.2554	TRUE	0	0	0	2	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A2--SERPINE1	4	13	COL1A2	14592	chr7:94041977:+	SERPINE1	36082	chr7:100770426:+	INCL_NON_REF_SPLICE	YES	13473	0	0	1	0.0511	0.166	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	HS742T_FIBROBLAST	0	1	0.2171	TRUE	0	0	0	1	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND6--MT-TE	3	17	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.0383	0.2171	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS742T_FIBROBLAST	0.91	1	0.2554	FALSE	499	1288	110	792	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND4--MT-ND4L	5	8	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	142	0	0.08	1	0.0639	0.1022	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS742T_FIBROBLAST	0.08	1	0.1661	FALSE	344	827	44	306	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	3	14	COL1A1	7639	chr17:48272136:-	FN1	61175	chr2:216240384:-	INCL_NON_REF_SPLICE	YES	17183	18714	0	0	0.0383	0.1788	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	0	0.2171	TRUE	0	0	0	14	0	FALSE	ACH-000230
HS742T_FIBROBLAST	AP000525.9--LA16c-60G3.6	6	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0766	0.0128	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HS742T_FIBROBLAST	1	1	0.0894	TRUE	0	42	0	133	42	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--SPARC	3	13	COL1A1	12702	chr17:48267073:-	SPARC	32920	chr5:151046014:-	INCL_NON_REF_SPLICE	YES	21891	15491	0	0	0.0383	0.166	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS742T_FIBROBLAST	0	0	0.2043	TRUE	0	0	0	2	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND4--MT-ND4L	6	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0766	0.0128	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS742T_FIBROBLAST	1	1	0.0894	FALSE	344	821	44	306	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0766	0.0128	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS742T_FIBROBLAST	1	1	0.0894	FALSE	462	80	0	856	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	6	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0766	0.0128	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS742T_FIBROBLAST	1	1	0.0894	FALSE	515	4851	409	746	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND6--MT-ND5	6	0	MT-ND6	1372	chrM:14302:-	MT-ND5	6334	chrM:14145:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0766	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS742T_FIBROBLAST	1	1	0.0766	FALSE	101	855	57	72	0	FALSE	ACH-000230
HS742T_FIBROBLAST	NRIP1--AF127936.7	5	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	1	0.43	0.9	0.0639	0.0511	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS742T_FIBROBLAST	0.43	0.9	0.115	FALSE	125	705	46	456	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--SPARC	4	7	COL1A1	6832	chr17:48272943:-	SPARC	32920	chr5:151046014:-	INCL_NON_REF_SPLICE	YES	18976	15491	0	0	0.0511	0.0894	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS742T_FIBROBLAST	0	0	0.1405	TRUE	0	0	0	2	0	FALSE	ACH-000230
HS742T_FIBROBLAST	FN1--COL1A1	3	11	FN1	17566	chr2:216273109:-	COL1A1	67167	chr17:48266543:-	INCL_NON_REF_SPLICE	YES	15137	20194	0	0	0.0383	0.1405	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS742T_FIBROBLAST	0	0	0.1788	TRUE	0	0	0	4	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--SPARC	4	6	COL1A1	6844	chr17:48272931:-	SPARC	32932	chr5:151046002:-	INCL_NON_REF_SPLICE	YES	19642	15617	0	0	0.0511	0.0766	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS742T_FIBROBLAST	0	0	0.1277	TRUE	0	0	0	2	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND5--MT-ND6	4	6	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	5413	1	0	0.0511	0.0766	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HS742T_FIBROBLAST	0	1	0.1277	FALSE	26	124	4	93	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-TA--MT-TC	4	6	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0.0766	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS742T_FIBROBLAST	1	1	0.1277	FALSE	462	80	0	856	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND6--MT-TE	5	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS742T_FIBROBLAST	1	1	0.0639	FALSE	499	1288	110	792	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A2--SERPINE1	4	3	COL1A2	27588	chr7:94055107:+	SERPINE1	44390	chr7:100781282:+	INCL_NON_REF_SPLICE	YES	14736	15351	0	0	0.0511	0.0383	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	HS742T_FIBROBLAST	0	0	0.0894	FALSE	0	0	0	2	0	FALSE	ACH-000230
HS742T_FIBROBLAST	POSTN--IGFBP5	3	7	POSTN	18289	chr13:38143881:-	IGFBP5	30791	chr2:217541121:-	INCL_NON_REF_SPLICE	YES	19339	7981	0	0	0.0383	0.0894	POSTN->chr13:38136720-38172981:-,periostin,IGFBP5->Oncogene{Bushman},chr2:217536828-217560248:-,insulin_like_growth_factor_binding_protein_5	HS742T_FIBROBLAST	0	0	0.1277	TRUE	0	0	0	1	0	FALSE	ACH-000230
HS742T_FIBROBLAST	PRR16--CTD-2334D19.1	4	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	32	0	0.18	1	0.0511	0.0383	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS742T_FIBROBLAST	0.18	1	0.0894	FALSE	56	216	12	147	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	2	11	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	0	18	1	0.42	0.0255	0.1405	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS742T_FIBROBLAST	0.42	1	0.166	FALSE	40	10	5	8	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A1--FN1	1	14	COL1A1	5797	chr17:48273978:-	FN1	26853	chr2:216295575:-	ONLY_REF_SPLICE	NO	17812	15877	0	0	0.0128	0.1788	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS742T_FIBROBLAST	0	0	0.1916	TRUE	0	0	0	1	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND6--MT-ND5	4	2	MT-ND6	1412	chrM:14262:-	MT-ND5	6311	chrM:14122:+	INCL_NON_REF_SPLICE	YES	1403	1383	0	0	0.0511	0.0255	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS742T_FIBROBLAST	0	0	0.0766	FALSE	101	855	57	72	0	FALSE	ACH-000230
HS742T_FIBROBLAST	COL1A2--SERPINE1	3	4	COL1A2	27597	chr7:94055116:+	SERPINE1	44344	chr7:100781236:+	INCL_NON_REF_SPLICE	NO	14510	17889	0	0	0.0383	0.0511	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	HS742T_FIBROBLAST	0	0	0.0894	FALSE	0	0	0	2	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-TA--MT-TN	4	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS742T_FIBROBLAST	1	1	0.0511	FALSE	369	2501	205	193	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-TA--MT-TN	4	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS742T_FIBROBLAST	1	1	0.0511	FALSE	369	2501	205	193	0	FALSE	ACH-000230
HS742T_FIBROBLAST	CTB-113P19.1--FTL	3	3	CTB-113P19.1	4733	chr5:151066482:+	FTL	9963	chr19:49468580:+	INCL_NON_REF_SPLICE	YES	3	0	0.67	1	0.0383	0.0383	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	HS742T_FIBROBLAST	0.67	1	0.0766	TRUE	0	2	0	13	2	TRUE	ACH-000230
HS742T_FIBROBLAST	MT-ND6--MT-ND5	3	3	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	735	1	0.01	0.0383	0.0383	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS742T_FIBROBLAST	0.01	1	0.0766	FALSE	101	855	57	72	0	FALSE	ACH-000230
HS742T_FIBROBLAST	POSTN--IGFBP5	3	3	POSTN	7351	chr13:38160332:-	IGFBP5	26105	chr2:217560260:-	INCL_NON_REF_SPLICE	YES	16372	0	0	1	0.0383	0.0383	POSTN->chr13:38136720-38172981:-,periostin,IGFBP5->Oncogene{Bushman},chr2:217536828-217560248:-,insulin_like_growth_factor_binding_protein_5	HS742T_FIBROBLAST	0	1	0.0766	FALSE	0	0	0	1	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND4--MT-ND4L	3	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS742T_FIBROBLAST	1	1	0.0383	FALSE	344	821	44	306	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS742T_FIBROBLAST	1	1	0.0383	FALSE	499	1288	110	792	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS742T_FIBROBLAST	1	1	0.0383	FALSE	499	1288	110	792	0	FALSE	ACH-000230
HS742T_FIBROBLAST	MT-TA--MT-TN	3	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS742T_FIBROBLAST	1	1	0.0383	FALSE	369	2501	205	193	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-254I22.1--CTD-2337A12.1	3	0	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0383	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HS742T_FIBROBLAST	1	1	0.0383	TRUE	6	15	3	35	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-254I22.1--CTD-2337A12.1	3	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0383	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HS742T_FIBROBLAST	1	1	0.0383	TRUE	4	2	0	28	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0.0511	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS742T_FIBROBLAST	1	1	0.0766	FALSE	407	2205	196	549	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-155G15.2--RP11-1E3.1	2	2	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0.0255	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HS742T_FIBROBLAST	1	1	0.051	FALSE	46	201	11	112	0	FALSE	ACH-000230
HS742T_FIBROBLAST	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	1	10	0.75	0.23	0.0255	0.0128	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS742T_FIBROBLAST	0.23	0.75	0.0383	FALSE	25	145	6	90	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	7741	chr5:95644428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HS742T_FIBROBLAST	1	1	0.0255	TRUE	0	0	0	4	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HS742T_FIBROBLAST	1	1	0.0255	TRUE	0	2	1	13	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	1	4	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	26134	chr11:121937142:-	ONLY_REF_SPLICE	YES	0	3	1	0.62	0.0128	0.0511	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS742T_FIBROBLAST	0.62	1	0.0639	FALSE	17	5	3	5	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	1	3	RP11-820L6.1	6183	chr11:122162992:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	NO	8	15	0.33	0.21	0.0128	0.0383	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS742T_FIBROBLAST	0.21	0.33	0.0511	FALSE	43	23	12	6	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	1	2	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	28009	chr11:121899553:-	ONLY_REF_SPLICE	YES	0	6	1	0.33	0.0128	0.0255	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS742T_FIBROBLAST	0.33	1	0.0383	FALSE	4	0	0	2	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0128	0.0128	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HS742T_FIBROBLAST	1	1	0.0256	FALSE	416	2512	207	587	0	FALSE	ACH-000230
HS742T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	1	1	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	26134	chr11:121937142:-	ONLY_REF_SPLICE	NO	0	3	1	0.4	0.0128	0.0128	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS742T_FIBROBLAST	0.4	1	0.0256	FALSE	10	1	1	4	0	FALSE	ACH-000230
HS742T_FIBROBLAST	SMARCA4--PSMB1	1	1	SMARCA4	37709	chr19:11152236:+	PSMB1	49241	chr6:170858201:-	ONLY_REF_SPLICE	NO	50	707	0.04	0	0.0128	0.0128	GTEx&tcga_normals:1/3694=0.03%,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	HS742T_FIBROBLAST	0	0.04	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-000230
HS742T_FIBROBLAST	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0128	0.0128	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS742T_FIBROBLAST	1	1	0.0256	TRUE	62	24	1	171	0	FALSE	ACH-000230
HS683_CENTRAL_NERVOUS_SYSTEM	CD63--TGFBI	116	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1096	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	1.1096	TRUE	0	0	0	14	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	DCAF8--NCKAP1	78	27	DCAF8	8832	chr1:160231075:-	NCKAP1	51743	chr2:183806891:-	ONLY_REF_SPLICE	YES	92	203	0.53	0.34	0.7461	0.2583	DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-,NCKAP1->NCK_associated_protein_1,chr2:183773843-183903586:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.34	0.53	1.0044	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	57	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5452	0.1148	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.66	TRUE	508	994	45	981	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	HDAC2--AK9	45	9	HDAC2	13064	chr6:114270143:-	AK9	36618	chr6:109983866:-	ONLY_REF_SPLICE	YES	297	0	0.15	1	0.4305	0.0861	HDAC2->Oncogene{Bushman},chr6:114254192-114332472:-,histone_deacetylase_2,AK9->adenylate_kinase_9,chr6:109814059-110012420:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.5166	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	45	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4305	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.4305	FALSE	499	1288	110	792	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	DCAF8--NCKAP1	43	4	DCAF8	7668	chr1:160232239:-	NCKAP1	51743	chr2:183806891:-	ONLY_REF_SPLICE	YES	9	203	0.84	0.19	0.4113	0.0383	DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-,NCKAP1->NCK_associated_protein_1,chr2:183773843-183903586:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.19	0.84	0.4496	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	30	12	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.95	0.287	0.1148	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS683_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.4018	TRUE	458	1351	185	561	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	33	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3157	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.3157	TRUE	519	3926	326	965	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	30	10	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	19	36	0.68	0.53	0.287	0.0957	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.53	0.68	0.3827	TRUE	181	1564	124	196	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	29	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	35	1	0.5	0.2774	0.0574	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS683_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.3348	TRUE	465	1949	224	605	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	26	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2487	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.2487	TRUE	7	10	0	216	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	19	19	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1817	0.1817	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS683_CENTRAL_NERVOUS_SYSTEM	0.97	1	0.3634	FALSE	499	1288	110	792	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	19	10	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.1817	0.0957	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS683_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.2774	FALSE	43	37	8	105	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	19	8	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.1817	0.0765	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.96	1	0.2582	TRUE	477	1352	189	275	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	20	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1913	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.1913	FALSE	499	1288	110	792	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	18	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1722	0.0191	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.1913	FALSE	292	1546	117	613	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RP4-565E6.1--HYDIN	15	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1435	0.0383	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.1818	TRUE	456	1387	91	133	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MT-ND3--MT-ATP8	15	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1435	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.1435	FALSE	351	233	23	137	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	WI2-1896O14.1--RP11-353N4.1	13	3	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1244	0.0287	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.1531	TRUE	361	258	24	38	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	PKM--PPIA	12	4	PKM	16758	chr15:72494872:-	PPIA	23273	chr7:44836291:+	INCL_NON_REF_SPLICE	YES	5168	0	0	1	0.1148	0.0383	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	HS683_CENTRAL_NERVOUS_SYSTEM	0	1	0.1531	TRUE	0	0	0	18	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	11	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	50	37	0.25	0.31	0.1052	0.0574	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS683_CENTRAL_NERVOUS_SYSTEM	0.25	0.31	0.1626	TRUE	267	562	48	632	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	DCAF8--NCKAP1	5	15	DCAF8	8000	chr1:160231907:-	NCKAP1	51743	chr2:183806891:-	ONLY_REF_SPLICE	YES	92	203	0.18	0.09	0.0478	0.1435	DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-,NCKAP1->NCK_associated_protein_1,chr2:183773843-183903586:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.09	0.18	0.1913	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	19	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0.1817	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.22	FALSE	499	1288	110	792	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	8	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	91	1	0.09	0.0765	0.0096	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS683_CENTRAL_NERVOUS_SYSTEM	0.09	1	0.0861	TRUE	347	1186	183	220	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	8	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0765	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0765	TRUE	1	0	0	97	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	7	4	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4936	53	0	0.17	0.067	0.0383	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS683_CENTRAL_NERVOUS_SYSTEM	0	0.17	0.1053	FALSE	43	37	8	105	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	6	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	2	0.81	0.87	0.0574	0.067	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS683_CENTRAL_NERVOUS_SYSTEM	0.81	0.87	0.1244	FALSE	515	4851	409	746	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	5	9	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	79	0	0.15	1	0.0478	0.0861	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS683_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.1339	FALSE	56	216	12	147	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	5	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.88	0.0478	0.0861	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS683_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.1339	FALSE	467	2173	244	435	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	6	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.5	1	0.0574	0.0383	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0957	FALSE	125	705	46	456	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	15	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.1435	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.1722	FALSE	499	1288	110	792	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-TL2	5	5	MT-ND5	1110	chrM:12446:+	MT-TL2	5833	chrM:12286:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0478	0.0478	LOCAL_REARRANGEMENT:+:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-TL2->chrM:12266-12336:+,mitochondrially_encoded_tRNA_leucine_2_(CUN)	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0956	FALSE	3	9	1	5	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	5	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.37	1	0.0478	0.0478	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.37	1	0.0956	FALSE	164	806	69	479	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	5	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	49	41	0.16	0.18	0.0478	0.0383	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS683_CENTRAL_NERVOUS_SYSTEM	0.16	0.18	0.0861	TRUE	267	562	48	632	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MT-ND3--MT-ATP8	6	0	MT-ND3	1222	chrM:10280:+	MT-ATP8	4375	chrM:8394:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0574	FALSE	351	233	23	137	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	6	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0574	TRUE	0	0	0	434	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RNF152--RP11-879F14.1	6	0	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0574	0	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0574	FALSE	275	472	65	43	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	DCAF8--NCKAP1	3	10	DCAF8	7841	chr1:160232066:-	NCKAP1	51743	chr2:183806891:-	ONLY_REF_SPLICE	YES	146	203	0.08	0.06	0.0287	0.0957	DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-,NCKAP1->NCK_associated_protein_1,chr2:183773843-183903586:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.06	0.08	0.1244	TRUE	0	0	0	1	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	10	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.0957	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.1244	FALSE	499	1288	110	792	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	5	1	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	4	1	0.6	0.86	0.0478	0.0096	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.6	0.86	0.0574	TRUE	16	11	2	20	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	5	0	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0478	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0478	TRUE	1	0	0	97	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	5	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0478	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0478	FALSE	499	1288	110	792	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0478	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0478	FALSE	0	0	0	189	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	3	7	MT-ND5	2150	chrM:13486:+	MT-ATP8	5871	chrM:8424:+	INCL_NON_REF_SPLICE	YES	4478	0	0	1	0.0287	0.067	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS683_CENTRAL_NERVOUS_SYSTEM	0	1	0.0957	FALSE	43	37	8	105	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	3	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0287	0.067	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS683_CENTRAL_NERVOUS_SYSTEM	0.77	1	0.0957	FALSE	407	2205	196	549	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	PSMB8--MT2A	4	0	PSMB8	2684	chr6:32810797:-	MT2A	8371	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	PSMB8->chr6:32808494-32812480:-,proteasome_subunit_beta_8,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0383	TRUE	0	0	0	3	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RP11-155G15.2--RP11-1E3.1	4	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0383	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0383	FALSE	46	201	11	112	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	3	3	MT-ND5	2466	chrM:13802:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	2394	635	0	0.01	0.0287	0.0287	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS683_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0574	FALSE	43	37	8	105	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	DCAF8--NCKAP1	3	1	DCAF8	4593	chr1:160249591:-	NCKAP1	51743	chr2:183806891:-	ONLY_REF_SPLICE	YES	0	203	1	0.02	0.0287	0.0096	DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-,NCKAP1->NCK_associated_protein_1,chr2:183773843-183903586:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0383	TRUE	0	0	0	1	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	PLXNB2--MT2A	3	1	PLXNB2	4885	chr22:50728393:-	MT2A	23273	chr16:56642513:+	INCL_NON_REF_SPLICE	YES	169	4	0.02	0.5	0.0287	0.0096	PLXNB2->chr22:50713408-50746056:-,plexin_B2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS683_CENTRAL_NERVOUS_SYSTEM	0.02	0.5	0.0383	TRUE	0	0	0	5	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	3	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0.0096	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0383	TRUE	254	575	65	124	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.0191	0.0478	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.0669	TRUE	274	363	69	150	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	9	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	1	1	0.91	0.0096	0.0861	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.0957	TRUE	160	277	29	98	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	3	0	0.77	1	0.0096	0.0861	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS683_CENTRAL_NERVOUS_SYSTEM	0.77	1	0.0957	FALSE	275	511	55	178	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	HMGA2--ZCCHC6	3	0	HMGA2	5315	chr12:66232349:+	ZCCHC6	54683	chr9:88903659:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,ZCCHC6->chr9:88902648-88969369:-,zinc_finger_CCHC-type_containing_6	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	JUN--MT2A	3	0	JUN	2308	chr1:59248478:-	MT2A	7705	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	JUN->ArcherDX_panel,FoundationOne_panel,Jun_proto-oncogene,_AP-1_transcription_factor_subunit,Oncogene{Bushman},chr1:59246465-59249785:-,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0287	TRUE	0	0	0	6	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MT-ND3--MT-ATP8	3	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0287	FALSE	351	233	23	137	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0287	FALSE	499	1288	110	792	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RND3--TMEM87B	3	0	RND3	7816	chr2:151328141:-	TMEM87B	18680	chr2:112832489:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	{Klijn_CCL:Brain=1},RND3->Rho_family_GTPase_3,chr2:151324709-151395525:-,TMEM87B->chr2:112812800-112876895:+,transmembrane_protein_87B	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RPTOR--MATR3	3	0	RPTOR	19312	chr17:78831700:+	MATR3	71942	chr5:138657587:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1,MATR3->chr5:138609441-138667360:+,matrin_3	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	2	3	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	3135	123	0	0.04	0.0191	0.0287	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HS683_CENTRAL_NERVOUS_SYSTEM	0	0.04	0.0478	FALSE	0	20	0	35	2	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	2	2	CD44	6502	chr11:35211612:+	PDHX	42230	chr11:35013862:+	ONLY_REF_SPLICE	YES	3135	120	0	0.03	0.0191	0.0191	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HS683_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0382	FALSE	0	0	0	2	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MLTK--RP11-511B23.2	2	2	MLTK	16472	chr2:174081978:+	RP11-511B23.2	45631	chr12:93398374:-	ONLY_REF_SPLICE	YES	77	0	0.05	1	0.0191	0.0191	MLTK->chr2:173940163-174132738:+,RP11-511B23.2->chr12:93397191-93609455:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.0382	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	2	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	74	0.4	0.05	0.0191	0.0191	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HS683_CENTRAL_NERVOUS_SYSTEM	0.05	0.4	0.0382	FALSE	0	48	1	163	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	ATP11B--PIK3CA	2	0	ATP11B	34086	chr3:182631782:+	PIK3CA	45558	chr3:178916538:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	ATP11B->ATPase_phospholipid_transporting_11B_(putative),chr3:182511288-182639423:+,PIK3CA->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr3:178865902-178957881:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_alpha	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	MED11--XPOT	2	0	MED11	1147	chr17:4634869:+	XPOT	8477	chr12:64803742:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	MED11->chr17:4634723-4636905:+,mediator_complex_subunit_11,XPOT->chr12:64798130-64844907:+,exportin_for_tRNA	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	SCARB1--UBC	2	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0191	TRUE	55	66	6	101	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	TMLHE--CLIC2	2	0	TMLHE	2332	chrX:154842453:-	CLIC2	18105	chrX:154528458:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,CLIC2->chloride_intracellular_channel_2,chrX:154505500-154563966:-	HS683_CENTRAL_NERVOUS_SYSTEM	1	1	0.0191	TRUE	5	6	1	7	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	1	2	CD44	6502	chr11:35211612:+	PDHX	33796	chr11:34969053:+	ONLY_REF_SPLICE	YES	3135	151	0	0.02	0.0096	0.0191	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HS683_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0287	FALSE	0	2	0	1	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	2	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	74	0.6	0.04	0.0096	0.0191	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HS683_CENTRAL_NERVOUS_SYSTEM	0.04	0.6	0.0287	FALSE	2	31	0	60	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	6	34	0.33	0.08	0.0096	0.0191	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HS683_CENTRAL_NERVOUS_SYSTEM	0.08	0.33	0.0287	FALSE	0	5	0	14	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RP4-565E6.1--HYDIN	1	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	5	1	0.38	0.0096	0.0191	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS683_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.0287	TRUE	84	87	4	41	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RAB31--VAPA	1	1	RAB31	1280	chr18:9708441:+	VAPA	26849	chr18:9931807:+	ONLY_REF_SPLICE	YES	135	356	0.01	0.01	0.0096	0.0096	{Klijn_CCL:Pancreas=1},NEIGHBORS[51451],RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	HS683_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0192	FALSE	4	4	0	3	0	FALSE	ACH-000067
HS683_CENTRAL_NERVOUS_SYSTEM	RAB31--VAPA	1	1	RAB31	13127	chr18:9845688:+	VAPA	26849	chr18:9931807:+	ONLY_REF_SPLICE	YES	130	356	0.02	0.01	0.0096	0.0096	{Klijn_CCL:Pancreas=1},NEIGHBORS[51451],RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	HS683_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000067
CAKI1_KIDNEY	AC104389.28--HBE1	145	201	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	44	5	0.89	0.99	1.8	2.4952	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CAKI1_KIDNEY	0.89	0.99	4.2952	TRUE	0	48	0	65	48	FALSE	ACH-000433
CAKI1_KIDNEY	DCBLD2--PCGF3	101	75	DCBLD2	19623	chr3:98526925:-	PCGF3	32175	chr4:724419:+	ONLY_REF_SPLICE	YES	664	52	0.21	0.77	1.2538	0.931	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,PCGF3->chr4:699537-764428:+,polycomb_group_ring_finger_3	CAKI1_KIDNEY	0.21	0.77	2.1848	TRUE	0	0	0	1	0	TRUE	ACH-000433
CAKI1_KIDNEY	AC104389.28--HBE1	17	210	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	44	0	0.84	1	0.211	2.6069	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CAKI1_KIDNEY	0.84	1	2.8179	TRUE	0	35	0	55	35	FALSE	ACH-000433
CAKI1_KIDNEY	TIMM23B--LINC00843	60	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7448	0.4097	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAKI1_KIDNEY	0.99	1	1.1545	TRUE	508	994	45	981	0	FALSE	ACH-000433
CAKI1_KIDNEY	MT-TA--MT-TC	37	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4593	0.1117	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAKI1_KIDNEY	1	1	0.571	FALSE	462	80	0	856	0	FALSE	ACH-000433
CAKI1_KIDNEY	TIMM23--RP11-464F9.1	37	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	887	5	0.05	0.9	0.4593	0.0745	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAKI1_KIDNEY	0.05	0.9	0.5338	TRUE	519	3926	326	965	0	FALSE	ACH-000433
CAKI1_KIDNEY	PLXDC1--TAF13	35	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4345	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	CAKI1_KIDNEY	1	1	0.4345	TRUE	7	10	0	216	0	FALSE	ACH-000433
CAKI1_KIDNEY	KANSL1--ARL17B	14	8	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	15	40	0.59	0.35	0.1738	0.0993	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	CAKI1_KIDNEY	0.35	0.59	0.2731	TRUE	181	1564	124	196	0	FALSE	ACH-000433
CAKI1_KIDNEY	C15orf57--CBX3	9	18	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	85	44	0.24	0.38	0.1117	0.2234	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CAKI1_KIDNEY	0.24	0.38	0.3351	TRUE	267	562	48	632	0	FALSE	ACH-000433
CAKI1_KIDNEY	HSP90AB1--MT-RNR2	13	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1614	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI1_KIDNEY	1	1	0.1614	FALSE	13	9	0	364	0	FALSE	ACH-000433
CAKI1_KIDNEY	AL589743.1--RP11-536C10.17	12	2	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	20	0	0.41	1	0.149	0.0248	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	CAKI1_KIDNEY	0.41	1	0.1738	TRUE	0	33	0	45	33	FALSE	ACH-000433
CAKI1_KIDNEY	AP000525.9--LA16c-60G3.6	12	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	19	0	0.42	1	0.149	0.0248	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	CAKI1_KIDNEY	0.42	1	0.1738	TRUE	0	42	0	133	42	FALSE	ACH-000433
CAKI1_KIDNEY	RP11-96H19.1--RP11-446N19.1	8	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	0	0.78	1	0.0993	0.1241	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAKI1_KIDNEY	0.78	1	0.2234	FALSE	515	4851	409	746	0	FALSE	ACH-000433
CAKI1_KIDNEY	C15orf57--CBX3	7	13	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	81	44	0.2	0.31	0.0869	0.1614	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CAKI1_KIDNEY	0.2	0.31	0.2483	TRUE	267	562	48	632	0	FALSE	ACH-000433
CAKI1_KIDNEY	HSP90AB1--MT-RNR2	10	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1241	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI1_KIDNEY	1	1	0.1241	FALSE	13	9	0	364	0	FALSE	ACH-000433
CAKI1_KIDNEY	MT-TA--MT-TC	7	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0869	0.1117	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAKI1_KIDNEY	1	1	0.1986	FALSE	462	80	0	856	0	FALSE	ACH-000433
CAKI1_KIDNEY	MT-CO3--MT-ATP6	5	14	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	3	0.95	0.86	0.0621	0.1738	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAKI1_KIDNEY	0.86	0.95	0.2359	FALSE	189	492	56	216	0	FALSE	ACH-000433
CAKI1_KIDNEY	FTH1--ACTG1	7	4	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	1522	0	0.01	1	0.0869	0.0497	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	CAKI1_KIDNEY	0.01	1	0.1366	TRUE	0	0	0	64	0	FALSE	ACH-000433
CAKI1_KIDNEY	FTH1--ACTG1	7	4	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	1553	0	0.01	1	0.0869	0.0497	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	CAKI1_KIDNEY	0.01	1	0.1366	TRUE	0	0	0	64	0	FALSE	ACH-000433
CAKI1_KIDNEY	RP11-96H19.1--RP11-446N19.1	5	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0621	0.149	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAKI1_KIDNEY	1	1	0.2111	FALSE	467	2173	244	435	0	FALSE	ACH-000433
CAKI1_KIDNEY	TUBA1B--CXCL1	7	3	TUBA1B	3051	chr12:49523130:-	CXCL1	7667	chr4:74735160:+	INCL_NON_REF_SPLICE	YES	5856	0	0	1	0.0869	0.0372	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,CXCL1->C-X-C_motif_chemokine_ligand_1,Oncogene{Bushman},chr4:74735110-74736959:+	CAKI1_KIDNEY	0	1	0.1241	TRUE	0	0	0	1	0	FALSE	ACH-000433
CAKI1_KIDNEY	MT-CO3--MT-ATP6	4	14	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	2	3	0.9	0.86	0.0497	0.1738	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAKI1_KIDNEY	0.86	0.9	0.2235	FALSE	189	492	56	216	0	FALSE	ACH-000433
CAKI1_KIDNEY	MT-CO3--MT-ATP6	4	14	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	3	0.86	0.86	0.0497	0.1738	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAKI1_KIDNEY	0.86	0.86	0.2235	FALSE	189	492	56	216	0	FALSE	ACH-000433
CAKI1_KIDNEY	MT-CO3--MT-ATP6	3	17	MT-CO3	1322	chrM:9528:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	3	0.87	0.87	0.0372	0.211	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAKI1_KIDNEY	0.87	0.87	0.2482	FALSE	189	492	56	216	0	FALSE	ACH-000433
CAKI1_KIDNEY	MT-TA--MT-TC	5	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0.0993	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAKI1_KIDNEY	1	1	0.1614	FALSE	462	80	0	856	0	FALSE	ACH-000433
CAKI1_KIDNEY	MT-CO3--MT-ATP6	3	14	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	3	0.89	0.85	0.0372	0.1738	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAKI1_KIDNEY	0.85	0.89	0.211	FALSE	189	492	56	216	0	FALSE	ACH-000433
CAKI1_KIDNEY	MT-CO3--MT-ATP6	3	14	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	2	3	0.89	0.85	0.0372	0.1738	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAKI1_KIDNEY	0.85	0.89	0.211	FALSE	189	492	56	216	0	FALSE	ACH-000433
CAKI1_KIDNEY	RP11-96H19.1--RP11-446N19.1	2	17	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0.211	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAKI1_KIDNEY	1	1	0.2358	FALSE	192	492	57	212	0	FALSE	ACH-000433
CAKI1_KIDNEY	SHISA9--U91319.1	5	4	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0621	0.0497	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	CAKI1_KIDNEY	0.9	1	0.1118	FALSE	4	37	0	19	0	FALSE	ACH-000433
CAKI1_KIDNEY	RP11-96H19.1--RP11-446N19.1	2	15	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.77	1	0.0248	0.1862	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAKI1_KIDNEY	0.77	1	0.211	FALSE	407	2205	196	549	0	FALSE	ACH-000433
CAKI1_KIDNEY	AC104389.28--HBE1	2	13	AC104389.28	3440	chr11:5367003:-	HBE1	14230	chr11:5290906:-	ONLY_REF_SPLICE	YES	44	252	0.25	0.06	0.0248	0.1614	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CAKI1_KIDNEY	0.06	0.25	0.1862	TRUE	0	48	0	65	48	FALSE	ACH-000433
CAKI1_KIDNEY	RP11-123O10.4--GRIP1	4	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0497	0.0248	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAKI1_KIDNEY	1	1	0.0745	FALSE	416	2512	207	587	0	FALSE	ACH-000433
CAKI1_KIDNEY	AC104389.28--HBE1	4	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0497	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CAKI1_KIDNEY	1	1	0.0497	TRUE	0	16	0	53	13	FALSE	ACH-000433
CAKI1_KIDNEY	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0497	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAKI1_KIDNEY	1	1	0.0497	FALSE	292	1546	117	613	0	FALSE	ACH-000433
CAKI1_KIDNEY	SPP1--S100A6	4	0	SPP1	6794	chr4:88903712:+	S100A6	10895	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	CAKI1_KIDNEY	1	1	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000433
CAKI1_KIDNEY	MT-CO3--MT-ATP6	3	3	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0372	0.0372	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAKI1_KIDNEY	0.75	1	0.0744	FALSE	189	492	56	216	0	FALSE	ACH-000433
CAKI1_KIDNEY	MT-CO3--MT-ATP6	3	3	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0372	0.0372	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAKI1_KIDNEY	0.75	1	0.0744	FALSE	189	492	56	216	0	FALSE	ACH-000433
CAKI1_KIDNEY	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAKI1_KIDNEY	1	1	0.0372	FALSE	189	492	56	216	0	FALSE	ACH-000433
CAKI1_KIDNEY	MT-CO3--MT-ATP6	3	0	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAKI1_KIDNEY	1	1	0.0372	FALSE	189	492	56	216	0	FALSE	ACH-000433
CAKI1_KIDNEY	DPH6-AS1--RP11-684B21.1	2	0	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	CAKI1_KIDNEY	1	1	0.0248	TRUE	17	119	17	33	0	FALSE	ACH-000433
CAKI1_KIDNEY	FBXO17--PPA2	2	0	FBXO17	1325	chr19:39466226:-	PPA2	15700	chr4:106377902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	FBXO17->F-box_protein_17,chr19:39432044-39466550:-,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	CAKI1_KIDNEY	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000433
CAKI1_KIDNEY	FN1--MGST1	2	0	FN1	14797	chr2:216279560:-	MGST1	61357	chr12:16510539:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1	CAKI1_KIDNEY	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000433
CAKI1_KIDNEY	KPNA6--PGS1	2	0	KPNA6	1097	chr1:32573735:+	PGS1	34436	chr17:76411033:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	KPNA6->chr1:32573639-32642169:+,karyopherin_subunit_alpha_6,PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1	CAKI1_KIDNEY	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000433
CAKI1_KIDNEY	NCK2--ZNF274	2	0	NCK2	5567	chr2:106471745:+	ZNF274	16501	chr19:58698314:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	CAKI1_KIDNEY	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000433
CAKI1_KIDNEY	KDM2B--MORN3	1	2	KDM2B	5340	chr12:122012452:-	MORN3	40234	chr12:122097254:-	ONLY_REF_SPLICE	YES	28	6	0.1	0.33	0.0124	0.0248	LOCAL_REARRANGEMENT:-:[70104],KDM2B->Oncogene{Bushman},chr12:121866900-122018920:-,lysine_demethylase_2B,MORN3->MORN_repeat_containing_3,chr12:122089024-122110537:-	CAKI1_KIDNEY	0.1	0.33	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000433
CAKI1_KIDNEY	HOXB3--ZADH2	1	1	HOXB3	1433	chr17:46681842:-	ZADH2	23961	chr18:72914295:-	ONLY_REF_SPLICE	YES	2	15	0.5	0.12	0.0124	0.0124	HOXB3->chr17:46626232-46682274:-,homeobox_B3,ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	CAKI1_KIDNEY	0.12	0.5	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000433
CAKI1_KIDNEY	LAMB1--B2M	1	1	LAMB1	21656	chr7:107591671:-	B2M	39912	chr15:45007621:+	ONLY_REF_SPLICE	YES	624	256	0	0.01	0.0124	0.0124	LAMB1->chr7:107564244-107643700:-,laminin_subunit_beta_1,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	CAKI1_KIDNEY	0	0.01	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000433
CAKI1_KIDNEY	MIR146A--PTTG1	1	1	MIR146A	1173	chr5:159895447:+	PTTG1	7782	chr5:159849309:+	ONLY_REF_SPLICE	YES	26	116	0.07	0.02	0.0124	0.0124	LOCAL_REARRANGEMENT:+:[39527],MIR146A->chr5:159895275-159914433:+,microRNA_146a,PTTG1->Oncogene{Bushman},chr5:159848829-159855748:+,pituitary_tumor-transforming_1	CAKI1_KIDNEY	0.02	0.07	0.0248	TRUE	0	1	0	1	1	FALSE	ACH-000433
CAKI1_KIDNEY	PCMTD1--SDCCAG8	1	1	PCMTD1	7395	chr8:52758221:-	SDCCAG8	25573	chr1:243449574:+	ONLY_REF_SPLICE	YES	86	105	0.02	0.02	0.0124	0.0124	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	CAKI1_KIDNEY	0.02	0.02	0.0248	TRUE	0	0	0	1	0	FALSE	ACH-000433
CAKI1_KIDNEY	PPIB--C19orf60	1	1	PPIB	2165	chr15:64454240:-	C19orf60	12611	chr19:18702918:+	ONLY_REF_SPLICE	YES	4286	129	0	0.02	0.0124	0.0124	PPIB->chr15:64448011-64455404:-,peptidylprolyl_isomerase_B,C19orf60->chr19:18699495-18703146:+,chromosome_19_open_reading_frame_60	CAKI1_KIDNEY	0	0.02	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000433
CAKI1_KIDNEY	RBM10--UBE2D2	1	1	RBM10	2759	chrX:47006897:+	UBE2D2	21820	chr5:138979957:+	ONLY_REF_SPLICE	YES	41	98	0.05	0.02	0.0124	0.0124	RBM10->ArcherDX_panel,FoundationOne_panel,RNA_binding_motif_protein_10,chrX:47004268-47046212:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	CAKI1_KIDNEY	0.02	0.05	0.0248	TRUE	0	0	0	2	0	FALSE	ACH-000433
CAKI1_KIDNEY	RBM23--PSMB5	1	1	RBM23	10587	chr14:23374084:-	PSMB5	19374	chr14:23502883:-	ONLY_REF_SPLICE	NO	82	2448	0.02	0	0.0124	0.0124	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Hippocampus=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[97359],RBM23->RNA_binding_motif_protein_23,chr14:23369854-23388393:-,PSMB5->chr14:23485752-23504439:-,proteasome_subunit_beta_5	CAKI1_KIDNEY	0	0.02	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000433
CAKI1_KIDNEY	SHISA9--U91319.1	1	1	SHISA9	9974	chr16:13297406:+	U91319.1	24024	chr16:13568067:+	ONLY_REF_SPLICE	YES	1	2	0.67	0.5	0.0124	0.0124	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	CAKI1_KIDNEY	0.5	0.67	0.0248	FALSE	1	17	0	8	0	FALSE	ACH-000433
CAMA1_BREAST	MT-ND4--MT-ND4L	1344	37	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	21	0	0.99	1	10.861	0.299	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.99	1	11.16	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	EHMT1--COL5A1	177	90	EHMT1	8473	chr9:140638542:+	COL5A1	67070	chr9:137642388:+	ONLY_REF_SPLICE	YES	123	83	0.68	0.76	1.4304	0.7273	{Klijn_CCL:Breast=1},EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1	CAMA1_BREAST	0.68	0.76	2.1577	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	158	42	MT-ND4	1170	chrM:10929:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	22	0	0.9	1	1.2768	0.3394	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.9	1	1.6162	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	XRRA1--CARNS1	93	29	XRRA1	13732	chr11:74617284:-	CARNS1	31444	chr11:67182839:+	ONLY_REF_SPLICE	YES	88	2	0.58	0.98	0.7515	0.2344	XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-,CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+	CAMA1_BREAST	0.58	0.98	0.9859	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	CHKA--PPFIA1	84	27	CHKA	13706	chr11:67829420:-	PPFIA1	57695	chr11:70228194:+	ONLY_REF_SPLICE	YES	67	214	0.62	0.34	0.6788	0.2182	CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	CAMA1_BREAST	0.34	0.62	0.897	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	TIMM23B--LINC00843	77	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6222	0.202	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAMA1_BREAST	1	1	0.8242	TRUE	508	994	45	981	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND6--MT-TE	81	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6546	0.0242	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAMA1_BREAST	1	1	0.6788	FALSE	499	1288	110	792	0	FALSE	ACH-000783
CAMA1_BREAST	KANSL1--ARL17B	75	18	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	38	59	0.71	0.61	0.6061	0.1455	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	CAMA1_BREAST	0.61	0.71	0.7516	TRUE	181	1564	124	196	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	15	250	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	22	1	0.92	1	0.1212	2.0203	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.92	1	2.1415	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	11	246	MT-ND4	1180	chrM:10939:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	25	0	0.91	1	0.0889	1.9879	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.91	1	2.0768	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	8	255	MT-ND4	1285	chrM:11044:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	35	0	0.88	1	0.0646	2.0607	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.88	1	2.1253	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	8	253	MT-ND4	1222	chrM:10981:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	24	0	0.92	1	0.0646	2.0445	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.92	1	2.1091	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	8	249	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	21	0	0.92	1	0.0646	2.0122	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.92	1	2.0768	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	12	229	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	21	1	0.92	1	0.097	1.8506	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.92	1	1.9476	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	7	247	MT-ND4	1209	chrM:10968:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	17	1	0.94	1	0.0566	1.996	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.94	1	2.0526	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	6	250	MT-ND4	1209	chrM:10968:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	17	1	0.94	1	0.0485	2.0203	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.94	1	2.0688	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	8	240	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	20	1	0.93	1	0.0646	1.9395	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.93	1	2.0041	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	ST7--PRKAG2	63	20	ST7	1454	chr7:116593745:+	PRKAG2	48598	chr7:151372723:-	ONLY_REF_SPLICE	YES	11	0	0.88	1	0.5091	0.1616	{Klijn_CCL:Breast=1},ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,PRKAG2->chr7:151253197-151574210:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_2	CAMA1_BREAST	0.88	1	0.6707	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	4	254	MT-ND4	1263	chrM:11022:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	31	1	0.89	1	0.0323	2.0526	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.89	1	2.0849	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	3	253	MT-ND4	1222	chrM:10981:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	24	0	0.91	1	0.0242	2.0445	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.91	1	2.0687	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	3	251	MT-ND4	1205	chrM:10964:+	MT-ND4L	5494	chrM:10585:+	INCL_NON_REF_SPLICE	YES	20	1	0.93	1	0.0242	2.0284	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.93	1	2.0526	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	3	251	MT-ND4	1229	chrM:10988:+	MT-ND4L	5515	chrM:10606:+	INCL_NON_REF_SPLICE	YES	24	1	0.91	1	0.0242	2.0284	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.91	1	2.0526	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	3	249	MT-ND4	1195	chrM:10954:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	21	1	0.92	1	0.0242	2.0122	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.92	1	2.0364	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	7	232	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	21	1	0.92	1	0.0566	1.8748	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.92	1	1.9314	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	3	242	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	23	1	0.91	1	0.0242	1.9556	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.91	1	1.9798	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	7	225	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	17	1	0.93	1	0.0566	1.8182	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.93	1	1.8748	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	4	235	MT-ND4	1147	chrM:10906:+	MT-ND4L	5504	chrM:10595:+	INCL_NON_REF_SPLICE	YES	20	1	0.92	1	0.0323	1.8991	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.92	1	1.9314	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	3	231	MT-ND4	1125	chrM:10884:+	MT-ND4L	5518	chrM:10609:+	INCL_NON_REF_SPLICE	YES	19	1	0.92	1	0.0242	1.8667	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.92	1	1.8909	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	3	229	MT-ND4	1114	chrM:10873:+	MT-ND4L	5509	chrM:10600:+	INCL_NON_REF_SPLICE	YES	21	1	0.92	1	0.0242	1.8506	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.92	1	1.8748	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	14	156	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	21	0	0.89	1	0.1131	1.2606	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.89	1	1.3737	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	3	189	MT-ND4	1285	chrM:11044:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	35	0	0.85	1	0.0242	1.5273	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.85	1	1.5515	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	RP11-123O10.4--GRIP1	48	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3879	0.0727	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAMA1_BREAST	1	1	0.4606	FALSE	416	2512	207	587	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	43	28	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5	0	0.93	1	0.3475	0.2263	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.93	1	0.5738	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	9	159	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	17	1	0.91	0.99	0.0727	1.2849	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.91	0.99	1.3576	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	10	152	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	13	1	0.93	0.99	0.0808	1.2283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.93	0.99	1.3091	FALSE	344	821	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	STX18-AS1--NOD2	41	16	STX18-AS1	2665	chr4:4546634:+	NOD2	33716	chr16:50765658:+	ONLY_REF_SPLICE	YES	3	0	0.95	1	0.3313	0.1293	STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,NOD2->chr16:50727514-50766988:+,nucleotide_binding_oligomerization_domain_containing_2	CAMA1_BREAST	0.95	1	0.4606	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	3	167	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	39	0	0.81	1	0.0242	1.3495	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.81	1	1.3737	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	6	154	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	45	1	0.78	0.99	0.0485	1.2445	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.78	0.99	1.293	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	40	16	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4401	30	0.01	0.65	0.3232	0.1293	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.01	0.65	0.4525	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	5	152	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	21	0	0.88	1	0.0404	1.2283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.88	1	1.2687	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	3	154	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	40	1	0.8	0.99	0.0242	1.2445	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.8	0.99	1.2687	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	XRRA1--CARNS1	37	17	XRRA1	13732	chr11:74617284:-	CARNS1	35563	chr11:67186958:+	ONLY_REF_SPLICE	YES	88	21	0.38	0.72	0.299	0.1374	XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-,CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+	CAMA1_BREAST	0.38	0.72	0.4364	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	OR51S1--TP53I11	41	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3313	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	CAMA1_BREAST	1	1	0.3313	TRUE	402	216	10	229	0	FALSE	ACH-000783
CAMA1_BREAST	TIMM23--RP11-464F9.1	38	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	223	3	0.15	0.93	0.3071	0.0081	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAMA1_BREAST	0.15	0.93	0.3152	TRUE	519	3926	326	965	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND6--MT-TE	37	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.299	0.0323	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAMA1_BREAST	1	1	0.3313	FALSE	499	1288	110	792	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	4	135	MT-ND4	1220	chrM:10979:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	24	1	0.85	0.99	0.0323	1.0909	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.85	0.99	1.1232	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	4	135	MT-ND4	1170	chrM:10929:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	22	1	0.86	0.99	0.0323	1.0909	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.86	0.99	1.1232	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	7	118	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	22	1	0.85	0.99	0.0566	0.9536	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.85	0.99	1.0102	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	3	131	MT-ND4	1062	chrM:10821:+	MT-ND4L	5516	chrM:10607:+	INCL_NON_REF_SPLICE	NO	11	1	0.92	0.99	0.0242	1.0586	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.92	0.99	1.0828	FALSE	344	821	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	5	123	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	18	1	0.88	0.99	0.0404	0.994	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.88	0.99	1.0344	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND6--MT-TE	28	18	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.2263	0.1455	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAMA1_BREAST	0.92	1	0.3718	FALSE	499	1288	110	792	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	21	43	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	501	0	0.11	1	0.1697	0.3475	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.11	1	0.5172	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	16	62	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	11544	0	0.01	1	0.1293	0.501	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.01	1	0.6303	FALSE	328	800	43	304	0	FALSE	ACH-000783
CAMA1_BREAST	ZNF644--RP4-601K24.1	30	5	ZNF644	1283	chr1:91487547:-	RP4-601K24.1	23375	chr1:83462398:+	ONLY_REF_SPLICE	YES	26	2	0.57	0.95	0.2424	0.0404	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,RP4-601K24.1->chr1:83368866-83632498:+	CAMA1_BREAST	0.57	0.95	0.2828	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	26	15	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6721	89	0.01	0.32	0.2101	0.1212	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.01	0.32	0.3313	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	PPP2R1A--CTD-2616J11.16	26	8	PPP2R1A	9079	chr19:52716363:+	CTD-2616J11.16	20605	chr19:51844320:+	ONLY_REF_SPLICE	YES	468	0	0.07	1	0.2101	0.0646	PPP2R1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:52693292-52730687:+,protein_phosphatase_2_regulatory_subunit_A,_alpha,CTD-2616J11.16->chr19:51843949-51847371:+	CAMA1_BREAST	0.07	1	0.2747	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	17	43	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	17	0	0.78	1	0.1374	0.3475	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.78	1	0.4849	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	13	59	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	25	0	0.74	1	0.1051	0.4768	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.74	1	0.5819	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	12	61	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	436	0	0.14	1	0.097	0.4929	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.14	1	0.5899	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	26	3	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	6159	19	0	0.6	0.2101	0.0242	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0	0.6	0.2343	FALSE	41	30	6	102	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	3	93	MT-ND4	1269	chrM:11028:+	MT-ND4L	5644	chrM:10735:+	INCL_NON_REF_SPLICE	YES	33	1	0.74	0.99	0.0242	0.7515	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.74	0.99	0.7757	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	3	92	MT-ND4	1201	chrM:10960:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	22	1	0.81	0.99	0.0242	0.7435	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.81	0.99	0.7677	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	5	78	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	15	1	0.85	0.99	0.0404	0.6303	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.85	0.99	0.6707	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	6	74	MT-ND4	1180	chrM:10939:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	YES	25	0	0.76	1	0.0485	0.598	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.76	1	0.6465	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	20	17	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	21	0	0.64	1	0.1616	0.1374	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.64	1	0.299	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	9	60	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	21	0	0.77	1	0.0727	0.4849	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.77	1	0.5576	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	7	61	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	33	0	0.67	1	0.0566	0.4929	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.67	1	0.5495	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	12	41	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.097	0.3313	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	1	1	0.4283	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	11	43	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	21	0	0.72	1	0.0889	0.3475	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.72	1	0.4364	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ATP6--MT-RNR2	21	1	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	13038	6749	0	0	0.1697	0.0081	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAMA1_BREAST	0	0	0.1778	FALSE	63	17	1	58	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	10	42	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	22	0	0.7	1	0.0808	0.3394	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.7	1	0.4202	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	7	53	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	13	1	0.82	0.98	0.0566	0.4283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.82	0.98	0.4849	FALSE	344	821	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	5	61	MT-ND4	1209	chrM:10968:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	17	0	0.8	1	0.0404	0.4929	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.8	1	0.5333	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	5	59	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	22	0	0.74	1	0.0404	0.4768	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.74	1	0.5172	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	14	23	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	8	1	0.82	0.97	0.1131	0.1859	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.82	0.97	0.299	FALSE	344	821	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	RP11-96H19.1--RP11-446N19.1	18	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.1455	0.0566	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAMA1_BREAST	0.96	1	0.2021	FALSE	515	4851	409	746	0	FALSE	ACH-000783
CAMA1_BREAST	CPEB3--IDE	18	3	CPEB3	1162	chr10:94050683:-	IDE	54782	chr10:94214296:-	ONLY_REF_SPLICE	YES	3	39	0.88	0.35	0.1455	0.0242	CPEB3->chr10:93806449-94050844:-,cytoplasmic_polyadenylation_element_binding_protein_3,IDE->chr10:94211441-94333833:-,insulin_degrading_enzyme	CAMA1_BREAST	0.35	0.88	0.1697	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	8	43	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	35	0	0.59	1	0.0646	0.3475	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.59	1	0.4121	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	14	18	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	5	548	0.86	0.06	0.1131	0.1455	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.06	0.86	0.2586	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	14	16	MT-ND5	2150	chrM:13486:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5907	89	0.01	0.25	0.1131	0.1293	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.01	0.25	0.2424	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	10	30	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.0808	0.2424	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.98	1	0.3232	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	3	56	MT-ND4	1130	chrM:10889:+	MT-ND4L	5657	chrM:10748:+	INCL_NON_REF_SPLICE	YES	18	0	0.77	1	0.0242	0.4525	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.77	1	0.4767	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	4	52	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	3	1	0.95	0.98	0.0323	0.4202	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.95	0.98	0.4525	FALSE	344	821	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	5	47	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	15	0	0.78	1	0.0404	0.3798	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.78	1	0.4202	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	5	43	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	35	0	0.58	1	0.0404	0.3475	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.58	1	0.3879	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND6--MT-TE	10	23	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0808	0.1859	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAMA1_BREAST	0.92	1	0.2667	FALSE	499	1288	110	792	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	6	38	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.0485	0.3071	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.94	1	0.3556	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	4	45	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	22	0	0.69	1	0.0323	0.3636	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.69	1	0.3959	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	PLXDC1--TAF13	15	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1212	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	CAMA1_BREAST	1	1	0.1212	TRUE	7	10	0	216	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	9	21	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	26	89	0.54	0.25	0.0727	0.1697	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.25	0.54	0.2424	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO1	13	4	MT-ND5	2236	chrM:13572:+	MT-CO1	6455	chrM:6546:+	INCL_NON_REF_SPLICE	YES	4568	18349	0	0	0.1051	0.0323	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAMA1_BREAST	0	0	0.1374	FALSE	8	12	2	9	0	FALSE	ACH-000783
CAMA1_BREAST	RP11-680G10.1--GSE1	14	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1131	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAMA1_BREAST	1	1	0.1131	TRUE	465	1949	224	605	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	3	42	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	21	0	0.68	1	0.0242	0.3394	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.68	1	0.3636	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO1	7	23	MT-ND5	2662	chrM:13998:+	MT-CO1	6245	chrM:6336:+	INCL_NON_REF_SPLICE	YES	1777	16397	0.02	0	0.0566	0.1859	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAMA1_BREAST	0	0.02	0.2425	FALSE	8	12	2	9	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	8	17	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	37	0	0.4	1	0.0646	0.1374	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.4	1	0.202	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	3	36	MT-ND5	2644	chrM:13980:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	2097	0	0.02	1	0.0242	0.2909	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.02	1	0.3151	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	4	30	MT-ND5	2796	chrM:14132:+	MT-ATP8	5887	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0.2424	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	1	1	0.2747	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	7	17	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	22	0	0.52	1	0.0566	0.1374	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.52	1	0.194	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	6	21	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	26	30	0.51	0.47	0.0485	0.1697	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.47	0.51	0.2182	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	6	21	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	3058	8	0.01	0.77	0.0485	0.1697	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.01	0.77	0.2182	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	4	28	MT-ND5	2228	chrM:13564:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	4499	0	0.01	1	0.0323	0.2263	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.01	1	0.2586	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-TI--MT-ND1	11	0	MT-TI	1004	chrM:4266:+	MT-ND1	4978	chrM:4215:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0889	0	LOCAL_REARRANGEMENT:+:[1],MT-TI->chrM:4263-4331:+,mitochondrially_encoded_tRNA_isoleucine,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CAMA1_BREAST	1	1	0.0889	FALSE	57	10	0	4	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	4	27	MT-ND5	2243	chrM:13579:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	4401	0	0.01	1	0.0323	0.2182	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.01	1	0.2505	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	4	26	MT-ND5	2592	chrM:13928:+	MT-ATP8	5878	chrM:8431:+	INCL_NON_REF_SPLICE	YES	3077	0	0.01	1	0.0323	0.2101	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.01	1	0.2424	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	5	22	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	3558	0	0.01	1	0.0404	0.1778	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.01	1	0.2182	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	RP11-147I3.1--ZMAT4	9	6	RP11-147I3.1	1692	chr11:74588022:+	ZMAT4	21831	chr8:40389757:-	ONLY_REF_SPLICE	YES	2	2	0.88	0.88	0.0727	0.0485	RP11-147I3.1->chr11:74587331-74631067:+,ZMAT4->chr8:40388109-40755352:-,zinc_finger_matrin-type_4	CAMA1_BREAST	0.88	0.88	0.1212	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	10	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	11	1	0.5	0.92	0.0808	0.0081	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.5	0.92	0.0889	FALSE	344	821	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND6--MT-TE	5	20	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.0404	0.1616	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAMA1_BREAST	0.89	1	0.202	FALSE	499	1288	110	792	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND6--MT-TE	4	24	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.0323	0.1939	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAMA1_BREAST	0.88	1	0.2262	FALSE	499	1288	110	792	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	3	27	MT-ND5	2583	chrM:13919:+	MT-ATP8	5869	chrM:8422:+	INCL_NON_REF_SPLICE	YES	3191	0	0.01	1	0.0242	0.2182	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.01	1	0.2424	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	5	19	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	4861	2	0	0.92	0.0404	0.1535	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0	0.92	0.1939	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	3	27	MT-ND5	2712	chrM:14048:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	50	1	0.38	0.97	0.0242	0.2182	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.38	0.97	0.2424	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	3	26	MT-ND5	2687	chrM:14023:+	MT-ATP8	5888	chrM:8441:+	INCL_NON_REF_SPLICE	YES	980	0	0.03	1	0.0242	0.2101	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.03	1	0.2343	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	4	22	MT-ND5	2764	chrM:14100:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	YES	1	25	0.96	0.51	0.0323	0.1778	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.51	0.96	0.2101	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	9	1	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	4	1	0.71	0.91	0.0727	0.0081	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.71	0.91	0.0808	FALSE	344	821	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	CHKA--PPFIA1	2	28	CHKA	14059	chr11:67829067:-	PPFIA1	57695	chr11:70228194:+	ONLY_REF_SPLICE	NO	87	214	0.26	0.12	0.0162	0.2263	CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	CAMA1_BREAST	0.12	0.26	0.2425	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	3	24	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.96	0.0242	0.1939	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.96	1	0.2181	FALSE	344	821	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	3	24	MT-ND5	2339	chrM:13675:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	3118	0	0.01	1	0.0242	0.1939	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.01	1	0.2181	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND6--MT-TE	4	19	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.0323	0.1535	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAMA1_BREAST	0.85	1	0.1858	FALSE	499	1288	110	792	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ATP6	4	17	MT-ND4	1806	chrM:11565:+	MT-ATP6	5353	chrM:8501:+	INCL_NON_REF_SPLICE	YES	13132	0	0	1	0.0323	0.1374	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAMA1_BREAST	0	1	0.1697	FALSE	21	137	19	8	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	4	17	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	37	0	0.36	1	0.0323	0.1374	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.36	1	0.1697	FALSE	344	827	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO3	7	5	MT-ND5	2607	chrM:13943:+	MT-CO3	6185	chrM:9579:+	INCL_NON_REF_SPLICE	YES	2805	13732	0	0	0.0566	0.0404	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAMA1_BREAST	0	0	0.097	FALSE	0	15	2	18	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO3	5	12	MT-ND5	2794	chrM:14130:+	MT-CO3	5951	chrM:9345:+	INCL_NON_REF_SPLICE	YES	0	5938	1	0	0.0404	0.097	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAMA1_BREAST	0	1	0.1374	FALSE	0	15	2	17	0	FALSE	ACH-000783
CAMA1_BREAST	TPD52--WDR3	7	4	TPD52	6214	chr8:81083660:-	WDR3	30590	chr1:118475911:+	ONLY_REF_SPLICE	YES	204	61	0.05	0.15	0.0566	0.0323	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,WDR3->WD_repeat_domain_3,chr1:118472343-118509165:+	CAMA1_BREAST	0.05	0.15	0.0889	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO3	4	14	MT-ND5	2797	chrM:14133:+	MT-CO3	5818	chrM:9212:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0.1131	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAMA1_BREAST	1	1	0.1454	FALSE	0	15	2	17	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ATP6--MT-RNR2	7	1	MT-ATP6	1555	chrM:9081:+	MT-RNR2	5408	chrM:2397:+	INCL_NON_REF_SPLICE	YES	3792	7208	0	0	0.0566	0.0081	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAMA1_BREAST	0	0	0.0647	FALSE	63	17	1	58	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO3	4	13	MT-ND5	2877	chrM:14213:+	MT-CO3	5951	chrM:9345:+	INCL_NON_REF_SPLICE	YES	0	5938	1	0	0.0323	0.1051	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAMA1_BREAST	0	1	0.1374	FALSE	0	15	2	17	0	FALSE	ACH-000783
CAMA1_BREAST	RP11-123O10.4--GRIP1	6	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0485	0.0404	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAMA1_BREAST	1	1	0.0889	FALSE	93	270	15	244	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	4	11	MT-ND5	1831	chrM:13167:+	MT-ATP8	5869	chrM:8422:+	INCL_NON_REF_SPLICE	YES	4185	0	0	1	0.0323	0.0889	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0	1	0.1212	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	3	15	MT-ND5	1875	chrM:13211:+	MT-ATP8	5863	chrM:8416:+	INCL_NON_REF_SPLICE	YES	5212	0	0	1	0.0242	0.1212	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0	1	0.1454	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	3	15	MT-ND5	2641	chrM:13977:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	2199	906	0.01	0.02	0.0242	0.1212	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0.01	0.02	0.1454	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	XRRA1--CARNS1	2	19	XRRA1	13732	chr11:74617284:-	CARNS1	34507	chr11:67185902:+	ONLY_REF_SPLICE	YES	88	17	0.19	0.55	0.0162	0.1535	XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-,CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+	CAMA1_BREAST	0.19	0.55	0.1697	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	MT-ATP6--MT-RNR2	6	2	MT-ATP6	1295	chrM:8821:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	19026	6775	0	0	0.0485	0.0162	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAMA1_BREAST	0	0	0.0647	FALSE	63	17	1	58	0	FALSE	ACH-000783
CAMA1_BREAST	RP11-120D5.1--MID1	6	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	1	0.89	0.89	0.0485	0.0162	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CAMA1_BREAST	0.89	0.89	0.0647	FALSE	16	356	14	466	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ATP6	5	5	MT-ND4	1317	chrM:11076:+	MT-ATP6	5353	chrM:8501:+	INCL_NON_REF_SPLICE	YES	12846	0	0	1	0.0404	0.0404	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAMA1_BREAST	0	1	0.0808	FALSE	21	93	18	8	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ATP6	3	13	MT-ND4	1546	chrM:11305:+	MT-ATP6	5337	chrM:8485:+	INCL_NON_REF_SPLICE	YES	15477	0	0	1	0.0242	0.1051	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAMA1_BREAST	0	1	0.1293	FALSE	21	137	19	8	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	6	1	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	7	0	0.5	1	0.0485	0.0081	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.5	1	0.0566	FALSE	344	821	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	4	9	MT-ND5	2047	chrM:13383:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	5940	1	0	0.93	0.0323	0.0727	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0	0.93	0.105	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO1	4	9	MT-ND5	2217	chrM:13553:+	MT-CO1	6357	chrM:6448:+	INCL_NON_REF_SPLICE	YES	4208	17209	0	0	0.0323	0.0727	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAMA1_BREAST	0	0	0.105	FALSE	8	12	2	9	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO1	3	12	MT-ND5	2112	chrM:13448:+	MT-CO1	6129	chrM:6220:+	INCL_NON_REF_SPLICE	NO	6739	16315	0	0	0.0242	0.097	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAMA1_BREAST	0	0	0.1212	FALSE	8	12	2	9	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND6--MT-TE	4	8	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.0323	0.0646	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAMA1_BREAST	0.86	1	0.0969	FALSE	499	1288	110	792	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND6--MT-TE	6	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAMA1_BREAST	1	1	0.0485	FALSE	499	1288	110	792	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAMA1_BREAST	1	1	0.0485	FALSE	499	1288	110	792	0	FALSE	ACH-000783
CAMA1_BREAST	XRRA1--CARNS1	1	20	XRRA1	13732	chr11:74617284:-	CARNS1	33483	chr11:67184878:+	ONLY_REF_SPLICE	YES	88	17	0.19	0.55	0.0081	0.1616	XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-,CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+	CAMA1_BREAST	0.19	0.55	0.1697	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	4	7	MT-ND5	1331	chrM:12667:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	5746	0	0	1	0.0323	0.0566	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0	1	0.0889	FALSE	42	35	7	104	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ATP6	5	2	MT-ND4	1452	chrM:11211:+	MT-ATP6	5779	chrM:8927:+	INCL_NON_REF_SPLICE	YES	13958	13256	0	0	0.0404	0.0162	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAMA1_BREAST	0	0	0.0566	FALSE	21	137	19	8	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	3	10	MT-ND5	1953	chrM:13289:+	MT-ATP8	5878	chrM:8431:+	INCL_NON_REF_SPLICE	YES	5564	0	0	1	0.0242	0.0808	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0	1	0.105	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO1	5	2	MT-ND5	2112	chrM:13448:+	MT-CO1	6730	chrM:6821:+	INCL_NON_REF_SPLICE	YES	6739	19815	0	0	0.0404	0.0162	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAMA1_BREAST	0	0	0.0566	FALSE	8	12	2	9	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO3	4	6	MT-ND5	2730	chrM:14066:+	MT-CO3	6178	chrM:9572:+	INCL_NON_REF_SPLICE	YES	5	13975	0.67	0	0.0323	0.0485	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAMA1_BREAST	0	0.67	0.0808	FALSE	0	15	2	17	0	FALSE	ACH-000783
CAMA1_BREAST	XRRA1--CARNS1	1	18	XRRA1	13732	chr11:74617284:-	CARNS1	34832	chr11:67186227:+	ONLY_REF_SPLICE	NO	88	26	0.18	0.42	0.0081	0.1455	XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-,CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+	CAMA1_BREAST	0.18	0.42	0.1536	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	12596	6719	0	0	0.0404	0.0081	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAMA1_BREAST	0	0	0.0485	FALSE	63	17	1	58	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	9731	0	0	1	0.0404	0.0081	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAMA1_BREAST	0	1	0.0485	FALSE	63	17	1	58	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	NO	10928	0	0	1	0.0404	0.0081	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAMA1_BREAST	0	1	0.0485	FALSE	63	17	1	58	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	5	1	MT-ND4	1035	chrM:10794:+	MT-ND4L	5641	chrM:10732:+	INCL_NON_REF_SPLICE	YES	4	1	0.6	0.86	0.0404	0.0081	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.6	0.86	0.0485	FALSE	344	821	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO1	4	5	MT-ND5	2718	chrM:14054:+	MT-CO1	6466	chrM:6557:+	INCL_NON_REF_SPLICE	YES	25	18299	0.26	0	0.0323	0.0404	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAMA1_BREAST	0	0.26	0.0727	FALSE	8	12	2	9	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO3	3	9	MT-ND5	2729	chrM:14065:+	MT-CO3	5938	chrM:9332:+	INCL_NON_REF_SPLICE	YES	5	3991	0.71	0	0.0242	0.0727	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAMA1_BREAST	0	0.71	0.0969	FALSE	0	15	2	17	0	FALSE	ACH-000783
CAMA1_BREAST	RP11-96H19.1--RP11-446N19.1	3	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0.0727	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAMA1_BREAST	1	1	0.0969	FALSE	407	2205	196	549	0	FALSE	ACH-000783
CAMA1_BREAST	CYCS--OSBPL3	5	0	CYCS	1162	chr7:25164819:-	OSBPL3	12948	chr7:24932240:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	CYCS->chr7:25159710-25164980:-,cytochrome_c,_somatic,OSBPL3->Oncogene{Bushman},chr7:24836158-25021253:-,oxysterol_binding_protein_like_3	CAMA1_BREAST	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	DLG2--AP000857.3	5	0	DLG2	44289	chr11:83243751:-	AP000857.3	63599	chr11:84647735:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	NEIGHBORS_OVERLAP:-:+:[19016],DLG2->chr11:83166055-85338966:-,discs_large_homolog_2,AP000857.3->chr11:84647733-84666749:+	CAMA1_BREAST	1	1	0.0404	FALSE	0	0	0	1	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ATP6--MT-ND2	5	0	MT-ATP6	1158	chrM:8684:+	MT-ND2	5581	chrM:5369:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	CAMA1_BREAST	1	1	0.0404	FALSE	177	96	13	17	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ATP6	4	4	MT-ND4	2196	chrM:11955:+	MT-ATP6	5795	chrM:8943:+	INCL_NON_REF_SPLICE	YES	6207	12500	0	0	0.0323	0.0323	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAMA1_BREAST	0	0	0.0646	FALSE	21	137	19	8	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	5	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	1	1	0.0404	FALSE	344	821	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO3	3	8	MT-ND5	2652	chrM:13988:+	MT-CO3	5884	chrM:9278:+	INCL_NON_REF_SPLICE	YES	1947	1	0.01	0.92	0.0242	0.0646	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAMA1_BREAST	0.01	0.92	0.0888	FALSE	0	15	2	18	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	4	3	MT-ND5	1807	chrM:13143:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	NO	3375	715	0	0.01	0.0323	0.0242	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0	0.01	0.0565	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO3	3	7	MT-ND5	2718	chrM:14054:+	MT-CO3	6023	chrM:9417:+	INCL_NON_REF_SPLICE	YES	27	12031	0.27	0	0.0242	0.0566	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAMA1_BREAST	0	0.27	0.0808	FALSE	0	15	2	18	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ATP6--MT-RNR2	4	2	MT-ATP6	1249	chrM:8775:+	MT-RNR2	4849	chrM:1838:+	INCL_NON_REF_SPLICE	YES	17310	5979	0	0	0.0323	0.0162	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAMA1_BREAST	0	0	0.0485	FALSE	63	17	1	58	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ND4L	3	6	MT-ND4	1093	chrM:10852:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	15	0	0.38	1	0.0242	0.0485	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAMA1_BREAST	0.38	1	0.0727	FALSE	344	826	44	306	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO3	4	2	MT-ND5	2591	chrM:13927:+	MT-CO3	6171	chrM:9565:+	INCL_NON_REF_SPLICE	YES	3101	14384	0	0	0.0323	0.0162	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAMA1_BREAST	0	0	0.0485	FALSE	0	15	2	18	0	FALSE	ACH-000783
CAMA1_BREAST	MT-TI--MT-ND1	4	2	MT-TI	1010	chrM:4272:+	MT-ND1	4946	chrM:4183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0.0162	LOCAL_REARRANGEMENT:+:[1],MT-TI->chrM:4263-4331:+,mitochondrially_encoded_tRNA_isoleucine,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CAMA1_BREAST	1	1	0.0485	FALSE	57	10	0	4	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	3	5	MT-ND5	1194	chrM:12530:+	MT-ATP8	5864	chrM:8417:+	INCL_NON_REF_SPLICE	YES	5647	0	0	1	0.0242	0.0404	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0	1	0.0646	FALSE	41	30	6	101	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO3	3	5	MT-ND5	2220	chrM:13556:+	MT-CO3	5881	chrM:9275:+	INCL_NON_REF_SPLICE	YES	4257	1	0	0.89	0.0242	0.0404	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAMA1_BREAST	0	0.89	0.0646	FALSE	0	15	2	18	0	FALSE	ACH-000783
CAMA1_BREAST	PRKAG2--ST7	4	1	PRKAG2	1619	chr7:151573592:-	ST7	40759	chr7:116739816:+	ONLY_REF_SPLICE	YES	0	11	1	0.31	0.0323	0.0081	PRKAG2->chr7:151253197-151574210:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_2,ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7	CAMA1_BREAST	0.31	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	30	1	0.14	0.0323	0.0081	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAMA1_BREAST	0.14	1	0.0404	TRUE	458	1351	185	561	0	FALSE	ACH-000783
CAMA1_BREAST	RP11-96H19.1--RP11-446N19.1	2	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	1	0.92	0.92	0.0162	0.0727	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAMA1_BREAST	0.92	0.92	0.0889	FALSE	467	2173	244	435	0	FALSE	ACH-000783
CAMA1_BREAST	ZHX1--LGR6	4	1	ZHX1	8807	chr8:124265562:-	LGR6	26216	chr1:202266636:+	ONLY_REF_SPLICE	YES	173	0	0.03	1	0.0323	0.0081	ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,LGR6->Oncogene{Bushman},chr1:202163029-202288909:+,leucine-rich_repeat_containing_G_protein-coupled_receptor_6	CAMA1_BREAST	0.03	1	0.0404	TRUE	0	0	0	1	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ATP6--MT-ND2	4	0	MT-ATP6	1123	chrM:8649:+	MT-ND2	5567	chrM:5355:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	CAMA1_BREAST	1	1	0.0323	FALSE	177	96	13	17	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO3	3	4	MT-ND5	2662	chrM:13998:+	MT-CO3	6212	chrM:9606:+	INCL_NON_REF_SPLICE	YES	1785	13421	0	0	0.0242	0.0323	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAMA1_BREAST	0	0	0.0565	FALSE	0	15	2	18	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAMA1_BREAST	1	1	0.0323	FALSE	499	1288	110	792	0	FALSE	ACH-000783
CAMA1_BREAST	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAMA1_BREAST	1	1	0.0323	FALSE	292	1546	117	613	0	FALSE	ACH-000783
CAMA1_BREAST	RP11-206M11.7--TM4SF4	4	0	RP11-206M11.7	1401	chr3:149002969:+	TM4SF4	8491	chr3:149205406:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	RP11-206M11.7->chr3:149002569-149051440:+,TM4SF4->chr3:149191761-149221068:+,transmembrane_4_L_six_family_member_4	CAMA1_BREAST	1	1	0.0323	TRUE	0	5	0	1	2	TRUE	ACH-000783
CAMA1_BREAST	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1603	chrM:9129:+	MT-RNR2	5387	chrM:2376:+	INCL_NON_REF_SPLICE	NO	15	7779	0.25	0	0.0242	0.0162	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAMA1_BREAST	0	0.25	0.0404	FALSE	63	17	1	58	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND4--MT-ATP6	3	2	MT-ND4	1209	chrM:10968:+	MT-ATP6	5317	chrM:8465:+	INCL_NON_REF_SPLICE	NO	10949	0	0	1	0.0242	0.0162	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAMA1_BREAST	0	1	0.0404	FALSE	21	91	18	8	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	3	2	MT-ND5	2047	chrM:13383:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	5940	906	0	0.01	0.0242	0.0162	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0	0.01	0.0404	FALSE	43	37	8	105	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	3	2	MT-ND5	1627	chrM:12963:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	4022	906	0	0.01	0.0242	0.0162	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0	0.01	0.0404	FALSE	42	36	7	104	0	FALSE	ACH-000783
CAMA1_BREAST	RP11-120D5.1--MID1	3	2	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	1	1	0.83	0.83	0.0242	0.0162	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CAMA1_BREAST	0.83	0.83	0.0404	FALSE	0	9	0	55	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1110	chrM:8636:+	MT-RNR2	5247	chrM:2236:+	INCL_NON_REF_SPLICE	NO	10899	6711	0	0	0.0242	0.0081	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAMA1_BREAST	0	0	0.0323	FALSE	63	17	1	58	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1125	chrM:8651:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	11264	6719	0	0	0.0242	0.0081	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAMA1_BREAST	0	0	0.0323	FALSE	63	17	1	58	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-ATP8	3	1	MT-ND5	1128	chrM:12464:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2714	30	0	0.12	0.0242	0.0081	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAMA1_BREAST	0	0.12	0.0323	FALSE	41	30	6	101	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO1	3	1	MT-ND5	2671	chrM:14007:+	MT-CO1	6915	chrM:7006:+	INCL_NON_REF_SPLICE	NO	1561	20148	0	0	0.0242	0.0081	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAMA1_BREAST	0	0	0.0323	FALSE	8	12	2	9	0	FALSE	ACH-000783
CAMA1_BREAST	RP11-634B7.4--TRIM58	3	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	5	1	0.44	0.0242	0.0081	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	CAMA1_BREAST	0.44	1	0.0323	TRUE	158	633	76	73	0	FALSE	ACH-000783
CAMA1_BREAST	MB21D2--FGF12	3	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	CAMA1_BREAST	1	1	0.0242	FALSE	0	17	0	46	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ATP6--MT-ND2	3	0	MT-ATP6	1107	chrM:8633:+	MT-ND2	5117	chrM:4905:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	CAMA1_BREAST	1	1	0.0242	FALSE	177	96	13	17	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ATP6--MT-ND2	3	0	MT-ATP6	1158	chrM:8684:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	CAMA1_BREAST	1	1	0.0242	FALSE	177	96	13	17	0	FALSE	ACH-000783
CAMA1_BREAST	MT-ND5--MT-CO1	3	0	MT-ND5	1254	chrM:12590:+	MT-CO1	7036	chrM:7127:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAMA1_BREAST	1	1	0.0242	FALSE	2	7	1	6	0	FALSE	ACH-000783
CAMA1_BREAST	NRIP1--AF127936.7	3	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAMA1_BREAST	1	1	0.0242	FALSE	125	705	46	456	0	FALSE	ACH-000783
CAMA1_BREAST	PLXDC1--TAF13	3	0	PLXDC1	27520	chr17:37222840:-	TAF13	38540	chr1:109605627:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	CAMA1_BREAST	1	1	0.0242	TRUE	7	10	0	216	0	FALSE	ACH-000783
CAMA1_BREAST	RP4-735C1.4--AHCYL1	3	0	RP4-735C1.4	1249	chr1:110268690:+	AHCYL1	10617	chr1:110551656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RP4-735C1.4->chr1:110268442-110317874:+,AHCYL1->adenosylhomocysteinase_like_1,chr1:110527308-110566357:+	CAMA1_BREAST	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	RP11-120D5.1--MID1	2	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	1	0.57	0.8	0.0162	0.0162	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CAMA1_BREAST	0.57	0.8	0.0324	FALSE	0	48	1	163	0	FALSE	ACH-000783
CAMA1_BREAST	XRRA1--CARNS1	2	2	XRRA1	12826	chr11:74618190:-	CARNS1	35563	chr11:67186958:+	ONLY_REF_SPLICE	YES	129	21	0.03	0.16	0.0162	0.0162	XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-,CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+	CAMA1_BREAST	0.03	0.16	0.0324	TRUE	0	0	0	1	0	FALSE	ACH-000783
CAMA1_BREAST	ZNF644--RP4-601K24.1	1	5	ZNF644	1283	chr1:91487547:-	RP4-601K24.1	21088	chr1:83418355:+	ONLY_REF_SPLICE	YES	26	1	0.19	0.86	0.0081	0.0404	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,RP4-601K24.1->chr1:83368866-83632498:+	CAMA1_BREAST	0.19	0.86	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	ZNF644--RP4-601K24.1	1	5	ZNF644	1584	chr1:91487246:-	RP4-601K24.1	21088	chr1:83418355:+	ONLY_REF_SPLICE	YES	36	1	0.14	0.86	0.0081	0.0404	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,RP4-601K24.1->chr1:83368866-83632498:+	CAMA1_BREAST	0.14	0.86	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	ZNF644--RP4-601K24.1	1	5	ZNF644	1584	chr1:91487246:-	RP4-601K24.1	23375	chr1:83462398:+	ONLY_REF_SPLICE	NO	36	2	0.14	0.75	0.0081	0.0404	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,RP4-601K24.1->chr1:83368866-83632498:+	CAMA1_BREAST	0.14	0.75	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	DANCR--DCUN1D4	2	0	DANCR	2809	chr4:53580405:+	DCUN1D4	12681	chr4:52729603:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,DCUN1D4->chr4:52709166-52783003:+,defective_in_cullin_neddylation_1_domain_containing_4	CAMA1_BREAST	1	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	NRIP1--AF127936.7	2	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAMA1_BREAST	1	1	0.0162	FALSE	164	806	69	479	0	FALSE	ACH-000783
CAMA1_BREAST	XKR9--RP11-326E22.1	2	0	XKR9	8344	chr8:71619388:+	RP11-326E22.1	21087	chr8:72111375:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0	GTEx_FI:{Brain=[count:4=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Liver=[count:1=pct:0.8]},XKR9->XK_related_9,chr8:71581600-71702606:+,RP11-326E22.1->chr8:72067692-72116458:+	CAMA1_BREAST	1	1	0.0162	TRUE	5	29	0	13	0	FALSE	ACH-000783
CAMA1_BREAST	ZNF644--RP4-601K24.1	1	2	ZNF644	1283	chr1:91487547:-	RP4-601K24.1	25250	chr1:83541824:+	ONLY_REF_SPLICE	NO	26	8	0.1	0.27	0.0081	0.0162	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,RP4-601K24.1->chr1:83368866-83632498:+	CAMA1_BREAST	0.1	0.27	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000783
CAMA1_BREAST	PHTF1--PPM1J	1	1	PHTF1	8365	chr1:114267381:-	PPM1J	27459	chr1:113256233:-	ONLY_REF_SPLICE	YES	32	50	0.06	0.04	0.0081	0.0081	PHTF1->chr1:114239453-114302111:-,putative_homeodomain_transcription_factor_1,PPM1J->chr1:113252616-113258099:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1J	CAMA1_BREAST	0.04	0.06	0.0162	TRUE	0	0	0	1	0	FALSE	ACH-000783
CAMA1_BREAST	RP11-206M11.7--TM4SF4	1	1	RP11-206M11.7	1401	chr3:149002969:+	TM4SF4	7401	chr3:149193610:+	ONLY_REF_SPLICE	YES	103	0	0.02	1	0.0081	0.0081	RP11-206M11.7->chr3:149002569-149051440:+,TM4SF4->chr3:149191761-149221068:+,transmembrane_4_L_six_family_member_4	CAMA1_BREAST	0.02	1	0.0162	TRUE	0	1	0	1	0	FALSE	ACH-000783
CAMA1_BREAST	ULK1--NOC4L	1	1	ULK1	13411	chr12:132401607:+	NOC4L	28114	chr12:132635526:+	ONLY_REF_SPLICE	YES	46	53	0.04	0.04	0.0081	0.0081	GTEx_FI:{Brain=[count:2=pct:0.3],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3]},ULK1->chr12:132379196-132407712:+,unc-51_like_autophagy_activating_kinase_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	CAMA1_BREAST	0.04	0.04	0.0162	TRUE	0	2	0	1	0	FALSE	ACH-000783
CORL105_LUNG	AC104389.28--HBE1	201	83	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	220	2	0.56	0.99	1.8316	0.7563	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CORL105_LUNG	0.56	0.99	2.5879	TRUE	0	48	0	65	48	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TN	116	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0571	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL105_LUNG	1	1	1.0571	FALSE	369	2501	205	193	0	FALSE	ACH-000161
CORL105_LUNG	NPLOC4--PDE6G	103	19	NPLOC4	4980	chr17:79589192:-	PDE6G	38860	chr17:79618715:-	ONLY_REF_SPLICE	YES	107	1	0.53	0.99	0.9386	0.1731	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	CORL105_LUNG	0.53	0.99	1.1117	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	TIMM23B--LINC00843	102	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9295	0.1094	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CORL105_LUNG	1	1	1.0389	TRUE	508	994	45	981	0	FALSE	ACH-000161
CORL105_LUNG	AC104389.28--HBE1	37	94	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	220	0	0.37	1	0.3372	0.8566	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CORL105_LUNG	0.37	1	1.1938	TRUE	0	35	0	55	35	FALSE	ACH-000161
CORL105_LUNG	TIMM23--RP11-464F9.1	59	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5376	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CORL105_LUNG	1	1	0.5376	TRUE	519	3926	326	965	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	4	216	MT-ND4	2041	chrM:11800:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	11115	2	0.02	0.99	0.0365	1.9683	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.02	0.99	2.0048	FALSE	344	826	44	305	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	5	210	MT-ND4	1209	chrM:10968:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	22	0	0.91	1	0.0456	1.9136	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.91	1	1.9592	FALSE	344	826	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TC	56	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5103	0.0456	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL105_LUNG	1	1	0.5559	FALSE	462	80	0	856	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	4	209	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	14	3	0.94	0.99	0.0365	1.9045	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.94	0.99	1.941	FALSE	344	826	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	4	207	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	14	2	0.94	0.99	0.0365	1.8863	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.94	0.99	1.9228	FALSE	344	826	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	3	210	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	19	1	0.92	1	0.0273	1.9136	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.92	1	1.9409	FALSE	344	826	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	3	209	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	19	2	0.92	0.99	0.0273	1.9045	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.92	0.99	1.9318	FALSE	344	827	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	3	208	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	NO	13	2	0.94	0.99	0.0273	1.8954	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.94	0.99	1.9227	FALSE	344	826	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	8	152	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	9	2	0.95	0.99	0.0729	1.3851	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.95	0.99	1.458	FALSE	344	821	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND6--MT-TE	45	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.4101	0.0365	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL105_LUNG	0.98	1	0.4466	FALSE	499	1288	110	792	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	9	131	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	22	1	0.86	0.99	0.082	1.1937	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.86	0.99	1.2757	FALSE	344	826	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	3	144	MT-ND4	1093	chrM:10852:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	13	2	0.92	0.99	0.0273	1.3122	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.92	0.99	1.3395	FALSE	344	826	44	306	0	FALSE	ACH-000161
CORL105_LUNG	HSP90AB1--MT-RNR2	38	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2474	0	0.02	1	0.3463	0.0182	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0.02	1	0.3645	FALSE	13	9	0	364	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	11	104	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	17	1	0.87	0.99	0.1002	0.9477	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.87	0.99	1.0479	FALSE	344	826	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TN	14	87	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.1276	0.7928	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL105_LUNG	1	1	0.9204	FALSE	369	2501	205	193	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	7	114	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	14	1	0.9	0.99	0.0638	1.0388	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.9	0.99	1.1026	FALSE	344	826	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	29	15	MT-ND1	1323	chrM:3629:+	MT-RNR2	5800	chrM:2514:+	INCL_NON_REF_SPLICE	YES	26	3195	0.63	0.01	0.2643	0.1367	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0.01	0.63	0.401	FALSE	120	26	5	87	0	FALSE	ACH-000161
CORL105_LUNG	RP11-344E13.3--UBBP4	25	27	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.2278	0.246	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	CORL105_LUNG	0.98	1	0.4738	TRUE	23	13	0	54	0	FALSE	ACH-000161
CORL105_LUNG	CHKA--SUV420H1	26	17	CHKA	5944	chr11:67848871:-	SUV420H1	21585	chr11:67957619:-	ONLY_REF_SPLICE	YES	77	63	0.36	0.41	0.2369	0.1549	LOCAL_REARRANGEMENT:-:[33419],CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,SUV420H1->chr11:67922330-67981295:-	CORL105_LUNG	0.36	0.41	0.3918	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	17	48	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	10079	1	0.01	0.98	0.1549	0.4374	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.01	0.98	0.5923	FALSE	328	800	43	304	0	FALSE	ACH-000161
CORL105_LUNG	HSP90AB1--MT-RNR2	28	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2515	0	0.01	1	0.2552	0.0182	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0.01	1	0.2734	FALSE	13	9	0	364	0	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TN	21	24	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1914	0.2187	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL105_LUNG	1	1	0.4101	FALSE	369	2501	205	193	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	22	13	MT-ND1	1180	chrM:3486:+	MT-RNR2	5462	chrM:2176:+	INCL_NON_REF_SPLICE	YES	27	8509	0.56	0	0.2005	0.1185	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0	0.56	0.319	FALSE	119	26	5	86	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	13	47	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	409	1	0.13	0.98	0.1185	0.4283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.13	0.98	0.5468	FALSE	344	827	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND6--MT-TE	23	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2096	0.0547	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL105_LUNG	0.97	1	0.2643	FALSE	499	1288	110	792	0	FALSE	ACH-000161
CORL105_LUNG	EVC--STK32B	22	4	EVC	5886	chr4:5735162:+	STK32B	43916	chr4:5399934:+	ONLY_REF_SPLICE	YES	5	1	0.84	0.96	0.2005	0.0365	EVC->EvC_ciliary_complex_subunit_1,chr4:5712924-5830772:+,STK32B->chr4:5053169-5502725:+,serine/threonine_kinase_32B	CORL105_LUNG	0.84	0.96	0.237	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	MT-TA--MT-TN	6	66	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0547	0.6014	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL105_LUNG	1	1	0.6561	FALSE	369	2501	205	193	0	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TN	9	49	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.082	0.4465	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL105_LUNG	1	1	0.5285	FALSE	369	2501	205	193	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	3	72	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	1	1	0.99	0.99	0.0273	0.6561	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.99	0.99	0.6834	FALSE	344	821	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	13	31	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	481	1	0.08	0.98	0.1185	0.2825	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.08	0.98	0.401	FALSE	344	827	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND6--MT-TE	15	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.1367	0.1458	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL105_LUNG	0.94	1	0.2825	FALSE	499	1288	110	792	0	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TN	12	27	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1094	0.246	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL105_LUNG	1	1	0.3554	FALSE	369	2501	205	193	0	FALSE	ACH-000161
CORL105_LUNG	CTC-338M12.9--KMT2C	12	26	CTC-338M12.9	2428	chr5:180710532:+	KMT2C	13003	chr7:151970952:-	INCL_NON_REF_SPLICE	YES	0	8	1	0.83	0.1094	0.2369	CTC-338M12.9->chr5:180708376-180710653:+,KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C	CORL105_LUNG	0.83	1	0.3463	TRUE	0	0	0	3	0	TRUE	ACH-000161
CORL105_LUNG	RP11-123O10.4--GRIP1	18	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.164	0.0182	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CORL105_LUNG	1	1	0.1822	FALSE	416	2512	207	587	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	11	28	MT-ND1	1435	chrM:3741:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	54	0	0.42	1	0.1002	0.2552	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0.42	1	0.3554	FALSE	114	26	4	85	0	FALSE	ACH-000161
CORL105_LUNG	CLIP2--LAT2	16	5	CLIP2	4005	chr7:73753334:+	LAT2	30188	chr7:73629152:+	ONLY_REF_SPLICE	YES	12	1	0.64	0.95	0.1458	0.0456	LOCAL_REARRANGEMENT:+:[59644],CLIP2->CAP-Gly_domain_containing_linker_protein_2,chr7:73703805-73820273:+,LAT2->chr7:73613982-73644161:+,linker_for_activation_of_T-cells_family_member_2	CORL105_LUNG	0.64	0.95	0.1914	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	EREG--BTC	16	4	EREG	1233	chr4:75231092:+	BTC	17916	chr4:75673359:-	ONLY_REF_SPLICE	YES	136	33	0.13	0.38	0.1458	0.0365	PROTCLUST,EREG->chr4:75230860-75254468:+,epiregulin,BTC->betacellulin,chr4:75669969-75719896:-	CORL105_LUNG	0.13	0.38	0.1823	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	5	48	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	7490	1	0.01	0.98	0.0456	0.4374	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.01	0.98	0.483	FALSE	344	827	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TN	4	51	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0.4647	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL105_LUNG	1	1	0.5012	FALSE	369	2501	205	193	0	FALSE	ACH-000161
CORL105_LUNG	CTC-338M12.9--KMT2C	9	30	CTC-338M12.9	2428	chr5:180710532:+	KMT2C	12966	chr7:151970989:-	INCL_NON_REF_SPLICE	YES	0	11	1	0.78	0.082	0.2734	CTC-338M12.9->chr5:180708376-180710653:+,KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C	CORL105_LUNG	0.78	1	0.3554	TRUE	0	0	0	3	0	TRUE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	9	25	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	19	1	0.64	0.97	0.082	0.2278	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.64	0.97	0.3098	FALSE	344	826	44	306	0	FALSE	ACH-000161
CORL105_LUNG	CTC-338M12.9--KMT2C	11	16	CTC-338M12.9	2408	chr5:180710512:+	KMT2C	13003	chr7:151970952:-	INCL_NON_REF_SPLICE	YES	0	8	1	0.77	0.1002	0.1458	CTC-338M12.9->chr5:180708376-180710653:+,KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C	CORL105_LUNG	0.77	1	0.246	TRUE	0	0	0	3	0	TRUE	ACH-000161
CORL105_LUNG	MT-TA--MT-TN	15	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1367	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL105_LUNG	1	1	0.1367	FALSE	369	2501	205	193	0	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TN	3	47	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0.4283	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL105_LUNG	1	1	0.4556	FALSE	369	2501	205	193	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	3	46	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	30	1	0.62	0.98	0.0273	0.4192	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.62	0.98	0.4465	FALSE	344	827	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	3	46	MT-ND4	1209	chrM:10968:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	22	1	0.69	0.98	0.0273	0.4192	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.69	0.98	0.4465	FALSE	344	826	44	306	0	FALSE	ACH-000161
CORL105_LUNG	STK11--SBNO2	14	2	STK11	3716	chr19:1207202:+	SBNO2	22405	chr19:1154401:-	ONLY_REF_SPLICE	YES	0	10	1	0.62	0.1276	0.0182	LOCAL_INVERSION:+:-:[15124],STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	CORL105_LUNG	0.62	1	0.1458	TRUE	0	1	0	1	1	TRUE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	6	30	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	20	1	0.64	0.97	0.0547	0.2734	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.64	0.97	0.3281	FALSE	344	826	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	5	33	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	8	1	0.83	0.97	0.0456	0.3007	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.83	0.97	0.3463	FALSE	344	821	44	306	0	FALSE	ACH-000161
CORL105_LUNG	AC104389.28--HBE1	13	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1185	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CORL105_LUNG	1	1	0.1185	TRUE	0	16	0	53	13	FALSE	ACH-000161
CORL105_LUNG	MT-TL1--MT-RNR2	13	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1185	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	1	1	0.1185	FALSE	7	521	16	32	0	FALSE	ACH-000161
CORL105_LUNG	MT-TL1--MT-RNR2	3	37	MT-TL1	1086	chrM:3315:+	MT-RNR2	5568	chrM:3163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0.3372	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	1	1	0.3645	FALSE	7	521	16	32	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	9	12	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	NO	48	107	0.3	0.16	0.082	0.1094	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0.16	0.3	0.1914	FALSE	92	22	4	61	0	FALSE	ACH-000161
CORL105_LUNG	C15orf57--CBX3	11	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	25	20	0.36	0.41	0.1002	0.0273	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CORL105_LUNG	0.36	0.41	0.1275	TRUE	267	562	48	632	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	6	23	MT-ND1	1861	chrM:4167:+	MT-RNR2	5504	chrM:2218:+	INCL_NON_REF_SPLICE	YES	3	9275	0.91	0	0.0547	0.2096	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0	0.91	0.2643	FALSE	120	26	5	87	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	7	19	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	14	0	0.65	1	0.0638	0.1731	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0.65	1	0.2369	FALSE	114	26	4	85	0	FALSE	ACH-000161
CORL105_LUNG	ACBD4--CTD-2020K17.1	11	2	ACBD4	6422	chr17:43216527:+	CTD-2020K17.1	16989	chr17:43268537:-	ONLY_REF_SPLICE	YES	17	1	0.43	0.93	0.1002	0.0182	LOCAL_INVERSION:+:-:[46750],ACBD4->acyl-CoA_binding_domain_containing_4,chr17:43209967-43221548:+,CTD-2020K17.1->chr17:43268298-43299589:-	CORL105_LUNG	0.43	0.93	0.1184	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	8	14	MT-ND1	1196	chrM:3502:+	MT-RNR2	4985	chrM:1699:+	INCL_NON_REF_SPLICE	YES	26	0	0.46	1	0.0729	0.1276	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0.46	1	0.2005	FALSE	114	26	4	85	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	4	30	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	34	1	0.5	0.97	0.0365	0.2734	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.5	0.97	0.3099	FALSE	344	827	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	4	30	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	32	1	0.52	0.97	0.0365	0.2734	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.52	0.97	0.3099	FALSE	344	827	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	4	30	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	22	1	0.61	0.97	0.0365	0.2734	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.61	0.97	0.3099	FALSE	344	826	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ATP6--MT-CO1	11	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9151	17433	0	0	0.1002	0.0091	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL105_LUNG	0	0	0.1093	FALSE	183	104	9	328	0	FALSE	ACH-000161
CORL105_LUNG	RP11-96H19.1--RP11-446N19.1	11	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1002	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CORL105_LUNG	1	1	0.1002	FALSE	515	4851	409	746	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	4	27	MT-ND1	1297	chrM:3603:+	MT-RNR2	4985	chrM:1699:+	INCL_NON_REF_SPLICE	YES	20	0	0.61	1	0.0365	0.246	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0.61	1	0.2825	FALSE	114	26	4	85	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	3	30	MT-ND1	1539	chrM:3845:+	MT-RNR2	5001	chrM:1715:+	INCL_NON_REF_SPLICE	YES	137	0	0.19	1	0.0273	0.2734	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0.19	1	0.3007	FALSE	114	26	4	85	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	3	30	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	17	1	0.66	0.97	0.0273	0.2734	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.66	0.97	0.3007	FALSE	344	826	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TC	10	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0911	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL105_LUNG	1	1	0.0911	FALSE	462	80	0	856	0	FALSE	ACH-000161
CORL105_LUNG	REV3L--RPL28	10	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0911	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CORL105_LUNG	1	1	0.0911	TRUE	22	156	2	142	0	FALSE	ACH-000161
CORL105_LUNG	RP11-680G10.1--GSE1	10	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0911	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CORL105_LUNG	1	1	0.0911	TRUE	465	1949	224	605	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-TL1	9	1	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	4	0	0.71	1	0.082	0.0091	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	CORL105_LUNG	0.71	1	0.0911	FALSE	210	95	5	49	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	3	25	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.93	0.0273	0.2278	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.93	1	0.2551	FALSE	344	821	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	6	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	34	0	0.36	1	0.0547	0.1185	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.36	1	0.1732	FALSE	344	827	44	306	0	FALSE	ACH-000161
CORL105_LUNG	CUL5--ADAMTS9-AS1	7	8	CUL5	1640	chr11:107880098:+	ADAMTS9-AS1	26746	chr3:64547384:+	INCL_NON_REF_SPLICE	YES	15	0	0.5	1	0.0638	0.0729	CUL5->chr11:107879459-107978503:+,cullin_5,ADAMTS9-AS1->ADAMTS9_antisense_RNA_1,chr3:64547014-64573878:+	CORL105_LUNG	0.5	1	0.1367	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	MT-ND6--MT-TE	4	19	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0365	0.1731	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL105_LUNG	0.96	1	0.2096	FALSE	499	1288	110	792	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND6--MT-TE	3	23	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0273	0.2096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL105_LUNG	0.93	1	0.2369	FALSE	499	1288	110	792	0	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TC	8	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0729	0.0273	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL105_LUNG	1	1	0.1002	FALSE	462	80	0	856	0	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TC	7	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0638	0.0638	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL105_LUNG	1	1	0.1276	FALSE	462	80	0	856	0	FALSE	ACH-000161
CORL105_LUNG	NPLOC4--PDE6G	4	19	NPLOC4	4980	chr17:79589192:-	PDE6G	37655	chr17:79620394:-	ONLY_REF_SPLICE	YES	107	0	0.18	1	0.0365	0.1731	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	CORL105_LUNG	0.18	1	0.2096	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	NPLOC4--PDE6G	4	19	NPLOC4	4980	chr17:79589192:-	PDE6G	37662	chr17:79620387:-	INCL_NON_REF_SPLICE	YES	107	0	0.18	1	0.0365	0.1731	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	CORL105_LUNG	0.18	1	0.2096	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	4	18	MT-ND1	1306	chrM:3612:+	MT-RNR2	5476	chrM:2190:+	INCL_NON_REF_SPLICE	YES	22	8447	0.5	0	0.0365	0.164	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0	0.5	0.2005	FALSE	119	26	5	86	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	5	14	MT-ND1	1264	chrM:3570:+	MT-RNR2	5687	chrM:2401:+	INCL_NON_REF_SPLICE	YES	14	11248	0.58	0	0.0456	0.1276	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0	0.58	0.1732	FALSE	120	26	5	87	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-TL1	4	18	MT-ND1	1342	chrM:3648:+	MT-TL1	5013	chrM:3286:+	INCL_NON_REF_SPLICE	YES	20	0	0.52	1	0.0365	0.164	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	CORL105_LUNG	0.52	1	0.2005	FALSE	210	95	5	49	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND6--MT-TE	5	14	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0456	0.1276	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL105_LUNG	0.95	1	0.1732	FALSE	499	1288	110	792	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND6--MT-TE	5	14	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0456	0.1276	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL105_LUNG	0.95	1	0.1732	FALSE	499	1288	110	792	0	FALSE	ACH-000161
CORL105_LUNG	MT-ATP6--MT-CO1	8	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11157	17302	0	0	0.0729	0.0091	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL105_LUNG	0	0	0.082	FALSE	183	104	9	328	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	4	17	MT-ND1	1246	chrM:3552:+	MT-RNR2	5019	chrM:1733:+	INCL_NON_REF_SPLICE	YES	18	0	0.54	1	0.0365	0.1549	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0.54	1	0.1914	FALSE	114	26	4	85	0	FALSE	ACH-000161
CORL105_LUNG	MT-ATP6--MT-CO1	6	8	MT-ATP6	1477	chrM:9003:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	7553	15614	0	0	0.0547	0.0729	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL105_LUNG	0	0	0.1276	FALSE	183	104	9	328	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	3	20	MT-ND1	1330	chrM:3636:+	MT-RNR2	5120	chrM:1834:+	INCL_NON_REF_SPLICE	YES	34	6465	0.4	0	0.0273	0.1823	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0	0.4	0.2096	FALSE	114	26	4	85	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	3	20	MT-ND1	1715	chrM:4021:+	MT-RNR2	5548	chrM:2262:+	INCL_NON_REF_SPLICE	YES	578	8862	0.04	0	0.0273	0.1823	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0	0.04	0.2096	FALSE	120	26	5	87	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	4	16	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	13	1	0.61	0.95	0.0365	0.1458	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.61	0.95	0.1823	FALSE	344	826	44	306	0	FALSE	ACH-000161
CORL105_LUNG	NPM1P24--SET	8	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0729	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CORL105_LUNG	1	1	0.0729	TRUE	0	0	0	434	0	FALSE	ACH-000161
CORL105_LUNG	ZBTB8OS--YARS	7	4	ZBTB8OS	1471	chr1:33116034:-	YARS	22143	chr1:33252048:-	ONLY_REF_SPLICE	YES	49	107	0.18	0.09	0.0638	0.0365	{Klijn_CCL:Skin=1},ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	CORL105_LUNG	0.09	0.18	0.1003	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	3	18	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	14	0	0.6	1	0.0273	0.164	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0.6	1	0.1913	FALSE	114	26	4	85	0	FALSE	ACH-000161
CORL105_LUNG	HPCAL1--MT-CO3	7	1	HPCAL1	5340	chr2:10537030:+	MT-CO3	17735	chrM:9278:+	INCL_NON_REF_SPLICE	YES	46	1	0.15	0.89	0.0638	0.0091	HPCAL1->chr2:10443015-10567743:+,hippocalcin_like_1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CORL105_LUNG	0.15	0.89	0.0729	FALSE	0	0	0	5	0	FALSE	ACH-000161
CORL105_LUNG	MT-ATP6--MT-CO1	7	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	8998	16962	0	0	0.0638	0.0091	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL105_LUNG	0	0	0.0729	FALSE	183	104	9	328	0	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TN	7	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0638	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL105_LUNG	1	1	0.0638	FALSE	369	2501	205	193	0	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TN	7	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0638	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL105_LUNG	1	1	0.0638	FALSE	369	2501	205	193	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	3	15	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	14	8739	0.56	0	0.0273	0.1367	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0	0.56	0.164	FALSE	120	26	5	87	0	FALSE	ACH-000161
CORL105_LUNG	CTC-338M12.9--KMT2C	4	10	CTC-338M12.9	2428	chr5:180710532:+	KMT2C	13091	chr7:151970864:-	INCL_NON_REF_SPLICE	YES	0	17	1	0.45	0.0365	0.0911	CTC-338M12.9->chr5:180708376-180710653:+,KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C	CORL105_LUNG	0.45	1	0.1276	TRUE	0	0	0	3	0	TRUE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	3	13	MT-ND1	1227	chrM:3533:+	MT-RNR2	5558	chrM:2272:+	INCL_NON_REF_SPLICE	YES	21	8917	0.43	0	0.0273	0.1185	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0	0.43	0.1458	FALSE	120	26	5	87	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	3	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	34	0	0.32	1	0.0273	0.1185	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.32	1	0.1458	FALSE	344	827	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	3	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	19	0	0.46	1	0.0273	0.1185	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	0.46	1	0.1458	FALSE	344	826	44	306	0	FALSE	ACH-000161
CORL105_LUNG	ACTN4--MT-CO1	6	0	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0547	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL105_LUNG	1	1	0.0547	FALSE	0	0	0	30	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND2--MT-TM	6	0	MT-ND2	1021	chrM:4490:+	MT-TM	5049	chrM:4408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0547	0	LOCAL_REARRANGEMENT:+:[1],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-TM->chrM:4402-4469:+,mitochondrially_encoded_tRNA_methionine	CORL105_LUNG	1	1	0.0547	FALSE	74	23	0	9	0	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TN	6	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0547	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL105_LUNG	1	1	0.0547	FALSE	369	2501	205	193	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	3	11	MT-ND1	1297	chrM:3603:+	MT-RNR2	6479	chrM:3193:+	INCL_NON_REF_SPLICE	YES	20	1	0.41	0.93	0.0273	0.1002	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	0.41	0.93	0.1275	FALSE	92	21	4	61	0	FALSE	ACH-000161
CORL105_LUNG	MT-ATP6--MT-CO1	4	6	MT-ATP6	1462	chrM:8988:+	MT-CO1	5224	chrM:6446:+	INCL_NON_REF_SPLICE	YES	8199	15898	0	0	0.0365	0.0547	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL105_LUNG	0	0	0.0912	FALSE	183	104	9	328	0	FALSE	ACH-000161
CORL105_LUNG	ZBTB8OS--YARS	5	2	ZBTB8OS	1471	chr1:33116034:-	YARS	24445	chr1:33248140:-	ONLY_REF_SPLICE	YES	49	88	0.12	0.07	0.0456	0.0182	{Klijn_CCL:Skin=1},ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	CORL105_LUNG	0.07	0.12	0.0638	TRUE	0	0	0	1	0	FALSE	ACH-000161
CORL105_LUNG	MT-ATP6--MT-CO1	5	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8859	17302	0	0	0.0456	0.0091	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL105_LUNG	0	0	0.0547	FALSE	183	104	9	328	0	FALSE	ACH-000161
CORL105_LUNG	MT-ATP6--MT-CO1	5	1	MT-ATP6	1136	chrM:8662:+	MT-CO1	5337	chrM:6559:+	INCL_NON_REF_SPLICE	YES	9598	17574	0	0	0.0456	0.0091	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL105_LUNG	0	0	0.0547	FALSE	183	104	9	328	0	FALSE	ACH-000161
CORL105_LUNG	MT-ATP6--MT-CO1	5	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9095	17302	0	0	0.0456	0.0091	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL105_LUNG	0	0	0.0547	FALSE	183	104	9	328	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND6--MT-TE	3	9	MT-ND6	1029	chrM:14645:-	MT-TE	4495	chrM:14773:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0273	0.082	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL105_LUNG	0.92	1	0.1093	FALSE	499	1288	110	792	0	FALSE	ACH-000161
CORL105_LUNG	RP11-96H19.1--RP11-446N19.1	5	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0456	0.0091	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CORL105_LUNG	0.86	1	0.0547	FALSE	407	2205	196	549	0	FALSE	ACH-000161
CORL105_LUNG	TNFRSF21--MT-ND4	5	1	TNFRSF21	1476	chr6:47277166:-	MT-ND4	13062	chrM:11226:+	INCL_NON_REF_SPLICE	YES	602	12965	0.01	0	0.0456	0.0091	TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	CORL105_LUNG	0	0.01	0.0547	FALSE	0	0	0	1	0	FALSE	ACH-000161
CORL105_LUNG	HSPBP1--GRK5	5	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	CORL105_LUNG	1	1	0.0456	TRUE	1	39	0	134	39	FALSE	ACH-000161
CORL105_LUNG	MT-ATP6--MT-CO1	4	4	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3335	17672	0	0	0.0365	0.0365	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL105_LUNG	0	0	0.073	FALSE	183	104	9	328	0	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TN	5	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL105_LUNG	1	1	0.0456	FALSE	369	2501	205	193	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-RNR2	3	7	MT-ND1	1009	chrM:3315:+	MT-RNR2	6449	chrM:3163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0.0638	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL105_LUNG	1	1	0.0911	FALSE	92	22	4	61	0	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TC	3	6	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0.0547	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL105_LUNG	1	1	0.082	FALSE	462	80	0	856	0	FALSE	ACH-000161
CORL105_LUNG	MT-ATP6--MT-CO1	4	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	8517	16072	0	0	0.0365	0.0091	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL105_LUNG	0	0	0.0456	FALSE	183	104	9	328	0	FALSE	ACH-000161
CORL105_LUNG	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0365	0.0091	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CORL105_LUNG	0.71	1	0.0456	FALSE	292	1546	117	613	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-TL1	4	0	MT-ND1	1053	chrM:3359:+	MT-TL1	5016	chrM:3289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	CORL105_LUNG	1	1	0.0365	FALSE	210	95	5	49	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	1	1	0.0365	FALSE	344	821	44	306	0	FALSE	ACH-000161
CORL105_LUNG	ZBTB8OS--YARS	3	4	ZBTB8OS	1475	chr1:33116030:-	YARS	22143	chr1:33252048:-	ONLY_REF_SPLICE	YES	104	107	0.06	0.06	0.0273	0.0365	{Klijn_CCL:Skin=1},ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	CORL105_LUNG	0.06	0.06	0.0638	TRUE	0	0	0	1	0	FALSE	ACH-000161
CORL105_LUNG	CUL5--ADAMTS9-AS1	3	3	CUL5	1640	chr11:107880098:+	ADAMTS9-AS1	32710	chr3:64568949:+	ONLY_REF_SPLICE	YES	15	5	0.29	0.55	0.0273	0.0273	CUL5->chr11:107879459-107978503:+,cullin_5,ADAMTS9-AS1->ADAMTS9_antisense_RNA_1,chr3:64547014-64573878:+	CORL105_LUNG	0.29	0.55	0.0546	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	MT-ATP6--MT-CO1	3	3	MT-ATP6	1176	chrM:8702:+	MT-CO1	4969	chrM:6191:+	INCL_NON_REF_SPLICE	YES	12043	15588	0	0	0.0273	0.0273	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL105_LUNG	0	0	0.0546	FALSE	183	103	9	328	0	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0.0273	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL105_LUNG	1	1	0.0546	FALSE	462	80	0	856	0	FALSE	ACH-000161
CORL105_LUNG	CHKA--SUV420H1	3	2	CHKA	2767	chr11:67864486:-	SUV420H1	23132	chr11:67953395:-	ONLY_REF_SPLICE	YES	55	74	0.08	0.06	0.0273	0.0182	LOCAL_REARRANGEMENT:-:[33419],CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,SUV420H1->chr11:67922330-67981295:-	CORL105_LUNG	0.06	0.08	0.0455	TRUE	0	0	0	1	0	FALSE	ACH-000161
CORL105_LUNG	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.29	1	0.0273	0.0182	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CORL105_LUNG	0.29	1	0.0455	FALSE	125	705	46	456	0	FALSE	ACH-000161
CORL105_LUNG	CHKA--SUV420H1	2	5	CHKA	2767	chr11:67864486:-	SUV420H1	21585	chr11:67957619:-	ONLY_REF_SPLICE	YES	55	63	0.11	0.1	0.0182	0.0456	LOCAL_REARRANGEMENT:-:[33419],CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,SUV420H1->chr11:67922330-67981295:-	CORL105_LUNG	0.1	0.11	0.0638	TRUE	0	0	0	1	0	FALSE	ACH-000161
CORL105_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	10517	16125	0	0	0.0273	0.0091	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL105_LUNG	0	0	0.0364	FALSE	183	104	9	328	0	FALSE	ACH-000161
CORL105_LUNG	MT-TA--MT-TC	3	1	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0.0091	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL105_LUNG	1	1	0.0364	FALSE	462	80	0	856	0	FALSE	ACH-000161
CORL105_LUNG	JSRP1--RPS28	3	0	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CORL105_LUNG	1	1	0.0273	TRUE	0	1	0	84	1	FALSE	ACH-000161
CORL105_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL105_LUNG	1	1	0.0273	FALSE	183	104	9	328	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND1--MT-TL1	3	0	MT-ND1	1068	chrM:3374:+	MT-TL1	5030	chrM:3303:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	CORL105_LUNG	1	1	0.0273	FALSE	210	95	5	49	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND2--MT-TM	3	0	MT-ND2	1070	chrM:4539:+	MT-TM	5104	chrM:4463:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	LOCAL_REARRANGEMENT:+:[1],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-TM->chrM:4402-4469:+,mitochondrially_encoded_tRNA_methionine	CORL105_LUNG	1	1	0.0273	FALSE	74	23	0	9	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL105_LUNG	1	1	0.0273	FALSE	344	821	44	306	0	FALSE	ACH-000161
CORL105_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL105_LUNG	1	1	0.0273	FALSE	499	1288	110	792	0	FALSE	ACH-000161
CORL105_LUNG	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CORL105_LUNG	1	1	0.0273	TRUE	0	0	0	434	0	FALSE	ACH-000161
CORL105_LUNG	SPTBN1--S100A6	3	0	SPTBN1	44780	chr2:54891664:+	S100A6	52441	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	GTEx&tcga_normals:2/3694=0.05%,SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	CORL105_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	SURF4--RPLP1	3	0	SURF4	7220	chr9:136229378:-	RPLP1	11318	chr15:69745167:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	SURF4->chr9:136228325-136242970:-,surfeit_4,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	CORL105_LUNG	1	1	0.0273	TRUE	0	0	0	4	0	TRUE	ACH-000161
CORL105_LUNG	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0182	0.0182	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CORL105_LUNG	0.19	1	0.0364	FALSE	164	806	69	479	0	FALSE	ACH-000161
CORL105_LUNG	ZBTB8OS--YARS	1	6	ZBTB8OS	6828	chr1:33093109:-	YARS	22143	chr1:33252048:-	ONLY_REF_SPLICE	NO	28	107	0.2	0.06	0.0091	0.0547	{Klijn_CCL:Skin=1},ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	CORL105_LUNG	0.06	0.2	0.0638	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	AC104389.28--HBE1	2	0	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CORL105_LUNG	1	1	0.0182	TRUE	0	11	0	26	8	FALSE	ACH-000161
CORL105_LUNG	CHKA--SUV420H1	2	0	CHKA	5944	chr11:67848871:-	SUV420H1	33739	chr11:67926638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	LOCAL_REARRANGEMENT:-:[33419],CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,SUV420H1->chr11:67922330-67981295:-	CORL105_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	CLIP2--LAT2	2	0	CLIP2	4005	chr7:73753334:+	LAT2	31313	chr7:73630277:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	LOCAL_REARRANGEMENT:+:[59644],CLIP2->CAP-Gly_domain_containing_linker_protein_2,chr7:73703805-73820273:+,LAT2->chr7:73613982-73644161:+,linker_for_activation_of_T-cells_family_member_2	CORL105_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	KPNB1--CDC27	2	0	KPNB1	11478	chr17:45742524:+	CDC27	47202	chr17:45209740:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	KPNB1->chr17:45726842-45762871:+,karyopherin_subunit_beta_1,CDC27->Oncogene{Bushman},cell_division_cycle_27,chr17:45195069-45266788:-	CORL105_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	NPLOC4--PDE6G	1	4	NPLOC4	3867	chr17:79596751:-	PDE6G	38860	chr17:79618715:-	ONLY_REF_SPLICE	YES	70	1	0.07	0.83	0.0091	0.0365	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	CORL105_LUNG	0.07	0.83	0.0456	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	RFX3--KDM4C	2	0	RFX3	8459	chr9:3330259:-	KDM4C	42311	chr9:6849507:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C	CORL105_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	SPR--DDB1	2	0	SPR	2245	chr2:73115733:+	DDB1	27340	chr11:61077890:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	SPR->chr2:73114489-73119287:+,sepiapterin_reductase_(7,8-dihydrobiopterin:NADP+_oxidoreductase),DDB1->chr11:61066923-61110068:-,damage_specific_DNA_binding_protein_1	CORL105_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	ZBTB8OS--YARS	1	4	ZBTB8OS	3344	chr1:33099552:-	YARS	22143	chr1:33252048:-	ONLY_REF_SPLICE	NO	90	107	0.05	0.04	0.0091	0.0365	{Klijn_CCL:Skin=1},ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	CORL105_LUNG	0.04	0.05	0.0456	TRUE	0	1	0	1	0	FALSE	ACH-000161
CORL105_LUNG	ZNF7--TOB1	2	0	ZNF7	3141	chr8:146054989:+	TOB1	22414	chr17:48941524:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,TOB1->chr17:48939584-48945339:-,transducer_of_ERBB2,_1	CORL105_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	AC104389.28--HBE1	1	2	AC104389.28	2337	chr11:5368106:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	121	2	0.02	0.6	0.0091	0.0182	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CORL105_LUNG	0.02	0.6	0.0273	TRUE	0	0	0	9	0	FALSE	ACH-000161
CORL105_LUNG	DOK7--RGS12	1	2	DOK7	1246	chr4:3465278:+	RGS12	47573	chr4:3441182:+	ONLY_REF_SPLICE	NO	7	4	0.3	0.43	0.0091	0.0182	LOCAL_REARRANGEMENT:+:[23393],DOK7->chr4:3465033-3503200:+,docking_protein_7,RGS12->chr4:3294755-3441640:+,regulator_of_G-protein_signaling_12	CORL105_LUNG	0.3	0.43	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000161
CORL105_LUNG	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0091	0.0182	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CORL105_LUNG	1	1	0.0273	FALSE	9	21	5	22	0	FALSE	ACH-000161
CORL105_LUNG	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	13	1	0.19	0.0091	0.0182	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CORL105_LUNG	0.19	1	0.0273	TRUE	458	1351	185	561	0	FALSE	ACH-000161
CORL105_LUNG	CTD-2021J15.1--DCBLD2	1	1	CTD-2021J15.1	2196	chr3:98623838:+	DCBLD2	10920	chr3:98600611:-	ONLY_REF_SPLICE	YES	0	114	1	0.02	0.0091	0.0091	LOCAL_INVERSION:+:-:[735],CTD-2021J15.1->chr3:98621268-98737406:+,DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2	CORL105_LUNG	0.02	1	0.0182	TRUE	0	0	0	1	0	FALSE	ACH-000161
CORL105_LUNG	NCAPD2--TAPBPL	1	1	NCAPD2	2870	chr12:6604391:+	TAPBPL	28758	chr12:6570021:+	ONLY_REF_SPLICE	YES	101	10	0.02	0.17	0.0091	0.0091	LOCAL_REARRANGEMENT:+:[26839],NCAPD2->Oncogene{Bushman},chr12:6602522-6641121:+,non-SMC_condensin_I_complex_subunit_D2,TAPBPL->TAP_binding_protein_like,chr12:6560856-6575683:+	CORL105_LUNG	0.02	0.17	0.0182	TRUE	0	0	0	1	0	FALSE	ACH-000161
CORL105_LUNG	RP11-47I22.3--PRKCH	1	1	RP11-47I22.3	1221	chr14:62037478:+	PRKCH	37424	chr14:61952220:+	ONLY_REF_SPLICE	YES	138	23	0.01	0.08	0.0091	0.0091	YOSHIHARA_TCGA_num_samples[BRCA:2|KIRC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[19564],RP11-47I22.3->chr14:62037258-62125414:+,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	CORL105_LUNG	0.01	0.08	0.0182	FALSE	0	2	0	2	2	FALSE	ACH-000161
TGBC11TKB_STOMACH	RAB3GAP1--ACMSD	30	6	RAB3GAP1	2297	chr2:135815656:+	ACMSD	45727	chr2:135659368:+	ONLY_REF_SPLICE	YES	18	0	0.67	1	0.528	0.1056	RAB3GAP1->RAB3_GTPase_activating_protein_catalytic_subunit_1,chr2:135809835-135933964:+,ACMSD->aminocarboxymuconate_semialdehyde_decarboxylase,chr2:135596117-135659604:+	TGBC11TKB_STOMACH	0.67	1	0.6336	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	TIMM23B--LINC00843	25	3	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.44	0.0528	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TGBC11TKB_STOMACH	1	1	0.4928	TRUE	508	994	45	981	0	FALSE	ACH-000949
TGBC11TKB_STOMACH	TIMM23--RP11-464F9.1	12	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2112	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TGBC11TKB_STOMACH	1	1	0.2112	TRUE	519	3926	326	965	0	FALSE	ACH-000949
TGBC11TKB_STOMACH	MT-TA--MT-TC	8	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1408	0.0528	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TGBC11TKB_STOMACH	1	1	0.1936	FALSE	462	80	0	856	0	FALSE	ACH-000949
TGBC11TKB_STOMACH	AC104389.28--HBE1	6	0	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1056	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	TGBC11TKB_STOMACH	1	1	0.1056	TRUE	0	48	0	65	48	FALSE	ACH-000949
TGBC11TKB_STOMACH	MT-ND6--MT-TE	4	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0704	0.0176	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TGBC11TKB_STOMACH	1	1	0.088	FALSE	499	1288	110	792	0	FALSE	ACH-000949
TGBC11TKB_STOMACH	AC104389.28--HBE1	4	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0704	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	TGBC11TKB_STOMACH	1	1	0.0704	TRUE	0	16	0	53	13	FALSE	ACH-000949
TGBC11TKB_STOMACH	RAI1--RP11-1035H13.3	4	0	RAI1	3231	chr17:17587017:+	RP11-1035H13.3	26004	chr16:18800440:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0704	0	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,RP11-1035H13.3->chr16:18799385-18812841:-	TGBC11TKB_STOMACH	1	1	0.0704	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	KRT8--TGFBRAP1	3	1	KRT8	13443	chr12:53291194:-	TGFBRAP1	28743	chr2:105886011:-	INCL_NON_REF_SPLICE	NO	523	2	0.01	0.67	0.0528	0.0176	KRT8->chr12:53290977-53343738:-,keratin_8,TGFBRAP1->chr2:105880871-105946491:-,transforming_growth_factor_beta_receptor_associated_protein_1	TGBC11TKB_STOMACH	0.01	0.67	0.0704	FALSE	0	0	0	1	0	FALSE	ACH-000949
TGBC11TKB_STOMACH	AUH--TGFBR1	3	0	AUH	3721	chr9:94118165:-	TGFBR1	21136	chr9:101891137:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	AUH->AU_RNA_binding_protein/enoyl-CoA_hydratase,Oncogene{Bushman},chr9:93976097-94124195:-,TGFBR1->Oncogene{Bushman},chr9:101866320-101916474:+,transforming_growth_factor_beta_receptor_1	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	CTD-3138B18.5--GIT1	3	0	CTD-3138B18.5	1286	chr19:58789889:-	GIT1	14497	chr17:27905797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	CTD-3138B18.5->chr19:58768639-58790174:-,GIT1->GIT_ArfGAP_1,chr17:27900487-27921072:-	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	DPP3--ID1	3	0	DPP3	14856	chr11:66272162:+	ID1	20214	chr20:30193771:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	DPP3->chr11:66247484-66277130:+,dipeptidyl_peptidase_3,ID1->chr20:30193086-30194318:+,inhibitor_of_DNA_binding_1,_HLH_protein	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	EEF2--MT-ATP8	3	0	EEF2	9839	chr19:3976473:-	MT-ATP8	13361	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TGBC11TKB_STOMACH	1	1	0.0528	FALSE	0	0	0	1	0	FALSE	ACH-000949
TGBC11TKB_STOMACH	FAM168A--MDC1	3	0	FAM168A	14294	chr11:73113829:-	MDC1	29169	chr6:30673047:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A,MDC1->chr6:30667584-30685666:-,mediator_of_DNA_damage_checkpoint_1	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	GLTSCR2--ARF1	3	0	GLTSCR2	4282	chr19:48254206:+	ARF1	19419	chr1:228285580:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	GOLGA4--DENR	3	0	GOLGA4	35559	chr3:37396678:+	DENR	44467	chr12:123247392:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	GOLGA4->chr3:37284668-37408242:+,golgin_A4,DENR->Oncogene{Bushman},chr12:123237321-123255611:+,density-regulated_protein	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	HDAC3--C1orf115	3	0	HDAC3	6296	chr5:141007457:-	C1orf115	14119	chr1:220863725:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	HDAC3->Oncogene{Bushman},chr5:141000443-141016437:-,histone_deacetylase_3,C1orf115->chr1:220863187-220872499:+,chromosome_1_open_reading_frame_115	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	HERC4--LSM6	3	0	HERC4	3466	chr10:69832640:-	LSM6	45943	chr4:147104064:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	HERC4->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_4,chr10:69681665-69835105:-,LSM6->LSM6_homolog,_U6_small_nuclear_RNA_and_mRNA_degradation_associated,chr4:147096837-147121152:+	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	MAML3--SLC7A5	3	0	MAML3	9994	chr4:140640529:-	SLC7A5	26249	chr16:87866576:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	MAML3->chr4:140637907-141075338:-,mastermind_like_transcriptional_coactivator_3,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TGBC11TKB_STOMACH	1	1	0.0528	FALSE	499	1288	110	792	0	FALSE	ACH-000949
TGBC11TKB_STOMACH	SNAPC4--TPRN	3	0	SNAPC4	14086	chr9:139275192:-	TPRN	28537	chr9:140087143:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	SNAPC4->chr9:139270029-139293249:-,small_nuclear_RNA_activating_complex_polypeptide_4,TPRN->chr9:140086069-140098645:-,taperin	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	SUOX--WDR82	3	0	SUOX	7042	chr12:56398332:+	WDR82	24653	chr3:52290003:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	SUOX->chr12:56390964-56400425:+,sulfite_oxidase,WDR82->Oncogene{Bushman},WD_repeat_domain_82,chr3:52288437-52322036:-	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	TTC39C--OSBPL1A	3	0	TTC39C	11238	chr18:21663045:+	OSBPL1A	54956	chr18:21761243:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	LOCAL_INVERSION:+:-:[26434],TTC39C->chr18:21572737-21715574:+,tetratricopeptide_repeat_domain_39C,OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A	TGBC11TKB_STOMACH	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	ARFRP1--UCKL1	2	0	ARFRP1	2669	chr20:62337709:-	UCKL1	17159	chr20:62577996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	ARFRP1->ADP_ribosylation_factor_related_protein_1,ArcherDX_panel,FoundationOne_panel,chr20:62329996-62339377:-,UCKL1->chr20:62571186-62587769:-,uridine-cytidine_kinase_1_like_1	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	BAIAP2L1--GATS	2	0	BAIAP2L1	8082	chr7:97944772:-	GATS	28227	chr7:99810756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-,GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	CFD--SERINC2	2	0	CFD	3504	chr19:861956:+	SERINC2	19127	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	CFD->chr19:859453-863453:+,complement_factor_D_(adipsin),SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	1	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	CLDN12--ARPC1A	2	0	CLDN12	4834	chr7:90034922:+	ARPC1A	33955	chr7:98955963:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	CLDN12->chr7:90013035-90142716:+,claudin_12,ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	CMIP--C7orf50	2	0	CMIP	1372	chr16:81479146:+	C7orf50	45549	chr7:1049779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	CMIP->c-Maf_inducing_protein,chr16:81478775-81745367:+,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	CRYM--GNAS	2	0	CRYM	1106	chr16:21314299:-	GNAS	34217	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	CRYM->chr16:21250195-21314404:-,crystallin_mu,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	DKC1--PDHA1	2	0	DKC1	1226	chrX:153991256:+	PDHA1	24452	chrX:19373467:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	DKC1->Oncogene{Bushman},chrX:153991031-154005964:+,dyskerin_pseudouridine_synthase_1,PDHA1->chrX:19362011-19379823:+,pyruvate_dehydrogenase_(lipoamide)_alpha_1	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	FDPS--RPS6KB1	2	0	FDPS	3847	chr1:155282186:+	RPS6KB1	25654	chr17:58018197:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	GUK1--SKI	2	0	GUK1	1402	chr1:228328064:+	SKI	15838	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	GUK1->chr1:228327663-228336685:+,guanylate_kinase_1,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	HDHD3--PAICS	2	0	HDHD3	1271	chr9:116139009:-	PAICS	12053	chr4:57314584:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	HDHD3->chr9:116135699-116139279:-,haloacid_dehalogenase_like_hydrolase_domain_containing_3,PAICS->chr4:57301907-57327534:+,phosphoribosylaminoimidazole_carboxylase;_phosphoribosylaminoimidazolesuccinocarboxamide_synthase	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	HSP90AA1--RP11-474G23.1	2	0	HSP90AA1	3867	chr14:102553323:-	RP11-474G23.1	21234	chr2:68374699:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1,RP11-474G23.1->chr2:68358370-68488362:-	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	LY75--MARCH7	2	0	LY75	15967	chr2:160728962:-	MARCH7	63648	chr2:160623795:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	GTEx_v2:{count=2;pct=0.02%;dist=Muscle_-_Skeletal=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:-:+:[824],LY75->chr2:160628362-160761260:-,lymphocyte_antigen_75,MARCH7->chr2:160569000-160627538:+,membrane_associated_ring-CH-type_finger_7	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	MAP2K7--TNPO2	2	0	MAP2K7	1226	chr19:7968953:+	TNPO2	20050	chr19:12822427:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	MAP2K7->chr19:7968728-7979363:+,mitogen-activated_protein_kinase_kinase_7,TNPO2->chr19:12810008-12834825:-,transportin_2	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	MATR3--PRKRIP1	2	0	MATR3	4523	chr5:138614818:+	PRKRIP1	39529	chr7:102038067:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	MATR3->chr5:138609441-138667360:+,matrin_3,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	NAB1--SDF4	2	0	NAB1	2579	chr2:191514086:+	SDF4	27331	chr1:1154307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	NAB1->NGFI-A_binding_protein_1,chr2:191511472-191557492:+,SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	NME2--S100A13	2	0	NME2	7432	chr17:49245704:+	S100A13	19659	chr1:153591514:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	NME2->NME/NM23_nucleoside_diphosphate_kinase_2,chr17:49230951-49249105:+,S100A13->Oncogene{Bushman},S100_calcium_binding_protein_A13,chr1:153591263-153606568:-	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	NUP54--BTC	2	0	NUP54	11508	chr4:77045802:-	BTC	22977	chr4:75673359:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	NUP54->chr4:77035812-77069668:-,nucleoporin_54kDa,BTC->betacellulin,chr4:75669969-75719896:-	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	OSBPL10--STT3B	2	0	OSBPL10	10820	chr3:31917925:-	STT3B	45034	chr3:31656597:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	LOCAL_INVERSION:-:+:[20270],OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10,STT3B->STT3B,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr3:31574130-31679112:+	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	PLEKHA5--AEBP2	2	0	PLEKHA5	3233	chr12:19285384:+	AEBP2	55563	chr12:19615444:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	{Klijn_CCL:Lung=1},NEIGHBORS[27645],PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5,AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+	TGBC11TKB_STOMACH	1	1	0.0352	FALSE	0	1	0	2	0	FALSE	ACH-000949
TGBC11TKB_STOMACH	RDH13--MRI1	2	0	RDH13	9547	chr19:55568021:-	MRI1	27765	chr19:13882935:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	RDH13->chr19:55550476-55582659:-,retinol_dehydrogenase_13_(all-trans/9-cis),MRI1->chr19:13875346-13885096:+,methylthioribose-1-phosphate_isomerase_1	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	RP11-114H23.1--RP11-114H23.2	2	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	TGBC11TKB_STOMACH	1	1	0.0352	FALSE	81	155	12	160	0	FALSE	ACH-000949
TGBC11TKB_STOMACH	RP11-1379J22.5--MAZ	2	0	RP11-1379J22.5	1720	chr5:179085482:+	MAZ	9084	chr16:29819551:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	RP11-1379J22.5->chr5:179084763-179091433:+,MAZ->MYC_associated_zinc_finger_protein,chr16:29817427-29823649:+	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	2	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	SCAF4--TUBGCP6	2	0	SCAF4	16796	chr21:33057362:-	TUBGCP6	36808	chr22:50658444:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	TSEN15--RP11-92G12.3	2	0	TSEN15	2724	chr1:184023997:+	RP11-92G12.3	12380	chr1:200659437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	TSEN15->chr1:184020811-184043346:+,tRNA_splicing_endonuclease_subunit_15,RP11-92G12.3->chr1:200638635-200663378:+	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	TSEN2--PPARG	2	0	TSEN2	6301	chr3:12545283:+	PPARG	34642	chr3:12458203:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},YOSHIHARA_TCGA_num_samples[BLCA:3],LOCAL_REARRANGEMENT:+:[50076],TSEN2->chr3:12525931-12581122:+,tRNA_splicing_endonuclease_subunit_2,PPARG->Oncogene{Bushman},chr3:12328867-12475855:+,peroxisome_proliferator_activated_receptor_gamma	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	1	0	1	1	TRUE	ACH-000949
TGBC11TKB_STOMACH	WASH5P--A4GALT	2	0	WASH5P	3129	chr19:66346:-	A4GALT	13507	chr22:43091637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	WASH5P->WAS_protein_family_homolog_5_pseudogene,chr19:60105-71626:-,A4GALT->alpha_1,4-galactosyltransferase,chr22:43088127-43117304:-	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
TGBC11TKB_STOMACH	ZCRB1--CNOT1	2	0	ZCRB1	5579	chr12:42711142:-	CNOT1	48029	chr16:58568299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	ZCRB1->chr12:42705880-42719920:-,zinc_finger_CCHC-type_and_RNA_binding_motif_containing_1,CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-	TGBC11TKB_STOMACH	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000949
NCIH1781_LUNG	TEAD1--KANSL3	133	30	TEAD1	2140	chr11:12697108:+	KANSL3	41745	chr2:97276875:-	ONLY_REF_SPLICE	YES	13	28	0.93	0.85	1.399	0.3156	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,KANSL3->KAT8_regulatory_NSL_complex_subunit_3,chr2:97258907-97308524:-	NCIH1781_LUNG	0.85	0.93	1.7146	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	TIMM23B--LINC00843	108	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.136	0.3156	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1781_LUNG	1	1	1.4516	TRUE	508	994	45	981	0	FALSE	ACH-000379
NCIH1781_LUNG	ADNP--TSNARE1	111	0	ADNP	1596	chr20:49547363:-	TSNARE1	35862	chr8:143310940:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.1676	0	ADNP->activity-dependent_neuroprotector_homeobox,chr20:49505585-49547958:-,TSNARE1->chr8:143293441-143484601:-,t-SNARE_domain_containing_1	NCIH1781_LUNG	1	1	1.1676	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	TIMM23--RP11-464F9.1	65	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	190	1	0.26	0.99	0.6837	0.0316	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1781_LUNG	0.26	0.99	0.7153	TRUE	519	3926	326	965	0	FALSE	ACH-000379
NCIH1781_LUNG	ADNP--TSNARE1	48	6	ADNP	2771	chr20:49545188:-	TSNARE1	35862	chr8:143310940:-	ONLY_REF_SPLICE	YES	25	0	0.68	1	0.5049	0.0631	ADNP->activity-dependent_neuroprotector_homeobox,chr20:49505585-49547958:-,TSNARE1->chr8:143293441-143484601:-,t-SNARE_domain_containing_1	NCIH1781_LUNG	0.68	1	0.568	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ND4L	3	171	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	11	0	0.94	1	0.0316	1.7987	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1781_LUNG	0.94	1	1.8303	FALSE	344	826	44	306	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ND4L	3	170	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	6	1	0.97	0.99	0.0316	1.7882	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1781_LUNG	0.97	0.99	1.8198	FALSE	344	826	44	306	0	FALSE	ACH-000379
NCIH1781_LUNG	TTC3--FHIT	42	12	TTC3	19590	chr21:38480746:+	FHIT	72955	chr3:60807705:-	ONLY_REF_SPLICE	YES	34	9	0.61	0.86	0.4418	0.1262	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	NCIH1781_LUNG	0.61	0.86	0.568	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ND4L	6	118	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.98	1	0.0631	1.2412	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1781_LUNG	0.98	1	1.3043	FALSE	344	821	44	306	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ND4L	3	119	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	5	0	0.96	1	0.0316	1.2517	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1781_LUNG	0.96	1	1.2833	FALSE	344	826	44	306	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ND4L	3	113	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	11	1	0.91	0.99	0.0316	1.1886	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1781_LUNG	0.91	0.99	1.2202	FALSE	344	826	44	306	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ND4L	3	111	MT-ND4	1279	chrM:11038:+	MT-ND4L	5615	chrM:10706:+	INCL_NON_REF_SPLICE	YES	27	1	0.81	0.99	0.0316	1.1676	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1781_LUNG	0.81	0.99	1.1992	FALSE	344	827	44	306	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND6--MT-TE	27	8	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.284	0.0842	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1781_LUNG	1	1	0.3682	FALSE	499	1288	110	792	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	15	55	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	7	0.97	0.91	0.1578	0.5785	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	0.91	0.97	0.7363	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ND4L	14	46	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8067	1	0.01	0.98	0.1473	0.4839	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1781_LUNG	0.01	0.98	0.6312	FALSE	328	800	43	304	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND5--MT-ATP8	24	3	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.2525	0.0316	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	0.93	1	0.2841	FALSE	43	37	8	105	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-TA--MT-TC	19	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1999	0.021	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1781_LUNG	1	1	0.2209	FALSE	462	80	0	856	0	FALSE	ACH-000379
NCIH1781_LUNG	CHST12--TEAD1	19	0	CHST12	1058	chr7:2443280:+	TEAD1	10905	chr11:12785726:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1999	0	CHST12->carbohydrate_(chondroitin_4)_sulfotransferase_12,chr7:2443223-2474242:+,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	NCIH1781_LUNG	1	1	0.1999	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	5	55	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	7	0.97	0.9	0.0526	0.5785	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	0.9	0.97	0.6311	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	3	63	MT-CO3	1207	chrM:9413:+	MT-ATP6	4736	chrM:8478:+	INCL_NON_REF_SPLICE	NO	6	0	0.92	1	0.0316	0.6627	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	0.92	1	0.6943	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	4	59	MT-CO3	1159	chrM:9365:+	MT-ATP6	4932	chrM:8674:+	INCL_NON_REF_SPLICE	YES	3	24	0.95	0.72	0.0421	0.6206	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	0.72	0.95	0.6627	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	RP11-123O10.4--GRIP1	17	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1788	0.0736	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1781_LUNG	1	1	0.2524	FALSE	416	2512	207	587	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	4	56	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	2	60	0.97	0.5	0.0421	0.5891	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	0.5	0.97	0.6312	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	4	55	MT-CO3	1142	chrM:9348:+	MT-ATP6	5336	chrM:9078:+	INCL_NON_REF_SPLICE	YES	2	2	0.97	0.97	0.0421	0.5785	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	0.97	0.97	0.6206	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	3	57	MT-CO3	1138	chrM:9344:+	MT-ATP6	4905	chrM:8647:+	INCL_NON_REF_SPLICE	YES	2	14	0.97	0.81	0.0316	0.5996	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	0.81	0.97	0.6312	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND6--MT-TE	14	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1473	0.1367	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1781_LUNG	1	1	0.284	FALSE	499	1288	110	792	0	FALSE	ACH-000379
NCIH1781_LUNG	NRIP1--AF127936.7	17	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.86	1	0.1788	0.0105	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1781_LUNG	0.86	1	0.1893	FALSE	292	1546	117	613	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	3	56	MT-CO3	1138	chrM:9344:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	2	16	0.97	0.79	0.0316	0.5891	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	0.79	0.97	0.6207	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	3	54	MT-CO3	1113	chrM:9319:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0316	0.568	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	0.98	1	0.5996	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	3	54	MT-CO3	1126	chrM:9332:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	2	7	0.97	0.89	0.0316	0.568	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	0.89	0.97	0.5996	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND5--MT-ATP8	16	2	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1592	3	0.01	0.86	0.1683	0.021	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	0.01	0.86	0.1893	FALSE	43	37	8	105	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-TA--MT-TC	15	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1578	0.021	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1781_LUNG	1	1	0.1788	FALSE	462	80	0	856	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ND4L	4	44	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	3	1	0.94	0.98	0.0421	0.4628	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1781_LUNG	0.94	0.98	0.5049	FALSE	344	821	44	306	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ND4L	3	46	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	11	1	0.82	0.98	0.0316	0.4839	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1781_LUNG	0.82	0.98	0.5155	FALSE	344	826	44	306	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ND4L	7	29	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	418	0	0.08	1	0.0736	0.305	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1781_LUNG	0.08	1	0.3786	FALSE	344	827	44	306	0	FALSE	ACH-000379
NCIH1781_LUNG	RP11-351I24.1--SBF2	14	1	RP11-351I24.1	1409	chr11:10324843:-	SBF2	31377	chr11:9879943:-	ONLY_REF_SPLICE	YES	0	7	1	0.68	0.1473	0.0105	NEIGHBORS[8450],RP11-351I24.1->chr11:10324204-10325251:-,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	NCIH1781_LUNG	0.68	1	0.1578	FALSE	0	0	0	2	0	FALSE	ACH-000379
NCIH1781_LUNG	FHIT--TTC3	13	2	FHIT	6726	chr3:61027719:-	TTC3	44732	chr21:38494117:+	ONLY_REF_SPLICE	YES	9	34	0.62	0.31	0.1367	0.021	FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH1781_LUNG	0.31	0.62	0.1577	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ND4L	6	29	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	222	0	0.14	1	0.0631	0.305	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1781_LUNG	0.14	1	0.3681	FALSE	344	827	44	306	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	3	35	MT-CO3	1033	chrM:9239:+	MT-ATP6	4768	chrM:8510:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.3682	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	1	1	0.3998	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2481	0	0	1	0.0947	0.0105	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1781_LUNG	0	1	0.1052	FALSE	13	9	0	364	0	FALSE	ACH-000379
NCIH1781_LUNG	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2466	0	0	1	0.0947	0.0105	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1781_LUNG	0	1	0.1052	FALSE	13	9	0	364	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ATP8	9	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9223	3	0	0.77	0.0947	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	0	0.77	0.1052	FALSE	231	217	16	283	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	9	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0947	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	1	1	0.0947	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ATP8	9	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0947	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	1	1	0.0947	FALSE	230	198	14	283	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND6--MT-TE	7	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0736	0.0842	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1781_LUNG	1	1	0.1578	FALSE	499	1288	110	792	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ND4L	4	19	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	1	1	0.96	0.96	0.0421	0.1999	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1781_LUNG	0.96	0.96	0.242	FALSE	344	821	44	306	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND6--MT-TE	5	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0.1473	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1781_LUNG	1	1	0.1999	FALSE	499	1288	110	792	0	FALSE	ACH-000379
NCIH1781_LUNG	TEAD1--KANSL3	4	18	TEAD1	2140	chr11:12697108:+	KANSL3	42000	chr2:97276620:-	ONLY_REF_SPLICE	YES	13	34	0.63	0.39	0.0421	0.1893	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,KANSL3->KAT8_regulatory_NSL_complex_subunit_3,chr2:97258907-97308524:-	NCIH1781_LUNG	0.39	0.63	0.2314	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ATP8	8	1	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1827	40	0	0.18	0.0842	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	0	0.18	0.0947	FALSE	216	209	16	281	0	FALSE	ACH-000379
NCIH1781_LUNG	NPM1P24--SET	8	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	NO	12	1071	0.43	0.01	0.0842	0.0105	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1781_LUNG	0.01	0.43	0.0947	FALSE	0	0	0	434	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	5	11	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0526	0.1157	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	0.94	1	0.1683	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	7	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.75	1	0.0736	0.021	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	0.75	1	0.0946	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	3	15	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0316	0.1578	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	0.9	1	0.1894	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	3	14	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0316	0.1473	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	0.94	1	0.1789	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	3	14	MT-CO3	1092	chrM:9298:+	MT-ATP6	5414	chrM:9156:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0316	0.1473	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	0.94	1	0.1789	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ATP8	6	1	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	9418	1517	0	0	0.0631	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	0	0	0.0736	FALSE	231	217	16	283	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ND4L	3	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	10	0	0.62	1	0.0316	0.1367	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1781_LUNG	0.62	1	0.1683	FALSE	344	826	44	306	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ND4L	3	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	32	0	0.33	1	0.0316	0.1367	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1781_LUNG	0.33	1	0.1683	FALSE	344	827	44	306	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND5--MT-ATP8	6	1	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2845	40	0	0.15	0.0631	0.0105	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	0	0.15	0.0736	FALSE	43	37	8	105	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND6--MT-TE	3	13	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.1367	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1781_LUNG	1	1	0.1683	FALSE	499	1288	110	792	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0631	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1781_LUNG	1	1	0.0631	FALSE	499	1288	110	792	0	FALSE	ACH-000379
NCIH1781_LUNG	RP11-123O10.4--GRIP1	4	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0421	0.0631	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1781_LUNG	1	1	0.1052	FALSE	93	270	15	244	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ATP6--MT-CO1	4	5	MT-ATP6	1444	chrM:8970:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	7781	11563	0	0	0.0421	0.0526	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1781_LUNG	0	0	0.0947	FALSE	183	104	9	328	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ATP8	5	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9063	40	0	0.13	0.0526	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	0	0.13	0.0631	FALSE	231	217	16	283	0	FALSE	ACH-000379
NCIH1781_LUNG	RP11-59N23.1--CMAS	5	1	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	2	59	0.75	0.09	0.0526	0.0105	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH1781_LUNG	0.09	0.75	0.0631	TRUE	21	102	17	28	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	5	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	1	1	0.0526	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	5	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	1	1	0.0526	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-CO3--MT-ATP6	4	4	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	5	0	0.62	1	0.0421	0.0421	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1781_LUNG	0.62	1	0.0842	FALSE	189	492	56	216	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND5--MT-ATP8	4	4	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0.0421	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	1	1	0.0842	FALSE	43	37	8	105	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1781_LUNG	1	1	0.0526	FALSE	462	80	0	856	0	FALSE	ACH-000379
NCIH1781_LUNG	TTC3--FHIT	5	0	TTC3	19590	chr21:38480746:+	FHIT	80611	chr3:59997126:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	NCIH1781_LUNG	1	1	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ND4L	4	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0.021	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1781_LUNG	1	1	0.0631	FALSE	344	821	44	306	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-TA--MT-TC	4	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0.021	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1781_LUNG	1	1	0.0631	FALSE	462	80	0	856	0	FALSE	ACH-000379
NCIH1781_LUNG	CMTM8--CMTM7	4	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	102	17	0.05	0.23	0.0421	0.0105	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	NCIH1781_LUNG	0.05	0.23	0.0526	FALSE	118	557	29	88	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ATP8	4	1	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	10165	0	0	1	0.0421	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	0	1	0.0526	FALSE	231	217	16	283	0	FALSE	ACH-000379
NCIH1781_LUNG	CHST12--TEAD1	4	0	CHST12	1072	chr7:2443294:+	TEAD1	10905	chr11:12785726:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	CHST12->carbohydrate_(chondroitin_4)_sulfotransferase_12,chr7:2443223-2474242:+,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	NCIH1781_LUNG	1	1	0.0421	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1017	chrM:10776:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	1	1	0.0421	FALSE	230	190	14	283	0	FALSE	ACH-000379
NCIH1781_LUNG	RP11-96H19.1--RP11-446N19.1	4	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0421	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1781_LUNG	1	1	0.0421	FALSE	515	4851	409	746	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND5--MT-ATP8	3	3	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0316	0.0316	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	0.86	1	0.0632	FALSE	43	37	8	105	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND5--MT-ATP8	3	3	MT-ND5	2518	chrM:13854:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1281	0	0	1	0.0316	0.0316	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	0	1	0.0632	FALSE	43	37	8	105	0	FALSE	ACH-000379
NCIH1781_LUNG	RP11-114H23.1--RP11-114H23.2	3	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0316	0.0316	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH1781_LUNG	0.67	1	0.0632	FALSE	81	155	12	160	0	FALSE	ACH-000379
NCIH1781_LUNG	C15orf57--CBX3	3	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	18	27	0.22	0.16	0.0316	0.021	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1781_LUNG	0.16	0.22	0.0526	TRUE	267	562	48	632	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	7878	0	0	1	0.0316	0.021	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1781_LUNG	0	1	0.0526	FALSE	182	97	9	327	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	29	0	0.15	1	0.0316	0.021	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	0.15	1	0.0526	FALSE	213	207	15	279	0	FALSE	ACH-000379
NCIH1781_LUNG	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0316	0.021	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1781_LUNG	0.26	1	0.0526	FALSE	125	705	46	456	0	FALSE	ACH-000379
NCIH1781_LUNG	TEAD1--KANSL3	3	2	TEAD1	2140	chr11:12697108:+	KANSL3	43321	chr2:97275299:-	ONLY_REF_SPLICE	YES	13	56	0.28	0.08	0.0316	0.021	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,KANSL3->KAT8_regulatory_NSL_complex_subunit_3,chr2:97258907-97308524:-	NCIH1781_LUNG	0.08	0.28	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	8305	11981	0	0	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1781_LUNG	0	0	0.0421	FALSE	183	104	9	328	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	10686	0	0	1	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	0	1	0.0421	FALSE	231	217	16	283	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	9313	0	0	1	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	0	1	0.0421	FALSE	231	217	16	283	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3454	40	0	0.09	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	0	0.09	0.0421	FALSE	218	210	16	281	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	8800	0	0	1	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	0	1	0.0421	FALSE	231	217	16	283	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10559	40	0	0.09	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	0	0.09	0.0421	FALSE	231	217	16	283	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	9356	179	0	0.02	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	0	0.02	0.0421	FALSE	231	217	16	283	0	FALSE	ACH-000379
NCIH1781_LUNG	TEAD1--KANSL3	3	1	TEAD1	1413	chr11:12696381:+	KANSL3	42000	chr2:97276620:-	ONLY_REF_SPLICE	YES	9	34	0.31	0.11	0.0316	0.0105	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,KANSL3->KAT8_regulatory_NSL_complex_subunit_3,chr2:97258907-97308524:-	NCIH1781_LUNG	0.11	0.31	0.0421	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	AGBL4--AGBL4-IT1	3	0	AGBL4	3399	chr1:50162985:-	AGBL4-IT1	30507	chr1:49840016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	NEIGHBORS_OVERLAP:-:-:[97884],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,AGBL4-IT1->AGBL4_intronic_transcript_1,chr1:49839873-49937757:-	NCIH1781_LUNG	1	1	0.0316	FALSE	75	131	5	14	0	FALSE	ACH-000379
NCIH1781_LUNG	CHSY3--HSPA8P4	3	0	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	NCIH1781_LUNG	1	1	0.0316	FALSE	89	26	1	44	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1781_LUNG	1	1	0.0316	FALSE	183	104	9	328	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1781_LUNG	1	1	0.0316	FALSE	183	104	9	328	0	FALSE	ACH-000379
NCIH1781_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1062	chrM:10821:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1781_LUNG	1	1	0.0316	FALSE	230	192	14	283	0	FALSE	ACH-000379
NCIH1781_LUNG	RALGAPA1--RP11-85K15.2	3	0	RALGAPA1	48923	chr14:36064840:-	RP11-85K15.2	63730	chr14:35438513:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	RALGAPA1->Ral_GTPase_activating_protein_catalytic_alpha_subunit_1,chr14:36007558-36278510:-,RP11-85K15.2->chr14:35390064-35451738:-	NCIH1781_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	RP11-155G15.2--RP11-1E3.1	3	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH1781_LUNG	1	1	0.0316	FALSE	46	201	11	112	0	FALSE	ACH-000379
NCIH1781_LUNG	RP11-155G15.2--RP11-1E3.1	3	0	RP11-155G15.2	3309	chr5:96772337:+	RP11-1E3.1	9053	chr5:97004255:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH1781_LUNG	1	1	0.0316	FALSE	0	1	0	8	0	FALSE	ACH-000379
NCIH1781_LUNG	RP11-96H19.1--RP11-446N19.1	3	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1781_LUNG	1	1	0.0316	FALSE	407	2205	196	549	0	FALSE	ACH-000379
NCIH1781_LUNG	RP11-96H19.1--RP11-446N19.1	3	0	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1781_LUNG	1	1	0.0316	FALSE	467	2173	244	435	0	FALSE	ACH-000379
NCIH1781_LUNG	RP3-416H24.1--HDGF	3	0	RP3-416H24.1	3022	chr12:52639211:-	HDGF	15549	chr1:156712756:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	RP3-416H24.1->chr12:52638832-52641232:-,HDGF->chr1:156711899-156736717:-,hepatoma-derived_growth_factor	NCIH1781_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	YIPF6--BAZ1B	3	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	NCIH1781_LUNG	1	1	0.0316	TRUE	1	23	1	24	8	FALSE	ACH-000379
NCIH1781_LUNG	FHIT--TTC3	2	2	FHIT	7819	chr3:60807613:-	TTC3	43097	chr21:38480692:+	ONLY_REF_SPLICE	YES	9	31	0.31	0.11	0.021	0.021	FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH1781_LUNG	0.11	0.31	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	BRI3BP--UBC	2	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH1781_LUNG	1	1	0.021	TRUE	5	99	5	34	0	FALSE	ACH-000379
NCIH1781_LUNG	FUT3--MLLT1	2	0	FUT3	1085	chr19:5851401:-	MLLT1	13089	chr19:6270770:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	FUT3->chr19:5842899-5851485:-,fucosyltransferase_3_(Lewis_blood_group),MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1	NCIH1781_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	TTC3--FHIT	1	2	TTC3	1139	chr21:38445664:+	FHIT	72955	chr3:60807705:-	ONLY_REF_SPLICE	YES	1	9	0.75	0.25	0.0105	0.021	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	NCIH1781_LUNG	0.25	0.75	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1781_LUNG	MANBA--UBE2D3	1	1	MANBA	9780	chr4:103610731:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	NO	72	353	0.03	0.01	0.0105	0.0105	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	NCIH1781_LUNG	0.01	0.03	0.021	FALSE	6	5	0	8	0	FALSE	ACH-000379
NCIH1781_LUNG	TEAD1--KANSL3	1	1	TEAD1	1413	chr11:12696381:+	KANSL3	41745	chr2:97276875:-	ONLY_REF_SPLICE	YES	9	28	0.18	0.07	0.0105	0.0105	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,KANSL3->KAT8_regulatory_NSL_complex_subunit_3,chr2:97258907-97308524:-	NCIH1781_LUNG	0.07	0.18	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000379
NCIH1651_LUNG	ZNFX1--ECI1	181	8	ZNFX1	1406	chr20:47894558:-	ECI1	30844	chr16:2296987:-	ONLY_REF_SPLICE	YES	2	5	0.99	0.97	2.6898	0.1189	ZNFX1->chr20:47854483-47894963:-,zinc_finger_NFX1-type_containing_1,ECI1->chr16:2289396-2302301:-,enoyl-CoA_delta_isomerase_1	NCIH1651_LUNG	0.97	0.99	2.8087	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	KATNBL1--TP53BP1	149	135	KATNBL1	15231	chr15:34437599:-	TP53BP1	43485	chr15:43714324:-	ONLY_REF_SPLICE	YES	57	84	0.83	0.77	2.2142	2.0062	KATNBL1->chr15:34432875-34502297:-,katanin_regulatory_subunit_B1_like_1,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	NCIH1651_LUNG	0.77	0.83	4.2204	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	SLC31A1--CPNE2	134	39	SLC31A1	1151	chr9:115983958:+	CPNE2	29499	chr16:57159772:+	ONLY_REF_SPLICE	YES	37	98	0.82	0.64	1.9913	0.5796	SLC31A1->chr9:115983808-116028674:+,solute_carrier_family_31_member_1,CPNE2->chr16:57126449-57181878:+,copine_2	NCIH1651_LUNG	0.64	0.82	2.5709	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	LRIG2--CHIA	81	52	LRIG2	7626	chr1:113641407:+	CHIA	31942	chr1:111853022:+	ONLY_REF_SPLICE	YES	3	1	0.98	0.99	1.2037	0.7728	{Klijn_CCL:Lung=1},LRIG2->chr1:113615831-113674882:+,leucine-rich_repeats_and_immunoglobulin_like_domains_2,CHIA->chitinase,_acidic,chr1:111833484-111863188:+	NCIH1651_LUNG	0.98	0.99	1.9765	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	CHMP4C--RP11-122A3.2	81	49	CHMP4C	1383	chr8:82645051:+	RP11-122A3.2	13444	chr8:91973076:-	ONLY_REF_SPLICE	YES	31	39	0.81	0.77	1.2037	0.7282	CHMP4C->charged_multivesicular_body_protein_4C,chr8:82644669-82671750:+,RP11-122A3.2->chr8:91970865-91997485:-	NCIH1651_LUNG	0.77	0.81	1.9319	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RNF138--MCM3AP	56	72	RNF138	2032	chr18:29672849:+	MCM3AP	18853	chr21:47700489:-	ONLY_REF_SPLICE	YES	109	59	0.54	0.68	0.8322	1.07	{Klijn_CCL:Lung=1},RNF138->chr18:29671818-29711524:+,ring_finger_protein_138,MCM3AP->chr21:47655047-47706211:-,minichromosome_maintenance_complex_component_3_associated_protein	NCIH1651_LUNG	0.54	0.68	1.9022	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RABGAP1L--DNM3	58	39	RABGAP1L	1248	chr1:174128795:+	DNM3	79165	chr1:172348158:+	ONLY_REF_SPLICE	YES	20	4	0.83	0.96	0.8619	0.5796	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,DNM3->chr1:171810621-172387606:+,dynamin_3	NCIH1651_LUNG	0.83	0.96	1.4415	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RNF138--MCM3AP	53	52	RNF138	2032	chr18:29672849:+	MCM3AP	19291	chr21:47700051:-	ONLY_REF_SPLICE	YES	109	65	0.49	0.62	0.7876	0.7728	{Klijn_CCL:Lung=1},RNF138->chr18:29671818-29711524:+,ring_finger_protein_138,MCM3AP->chr21:47655047-47706211:-,minichromosome_maintenance_complex_component_3_associated_protein	NCIH1651_LUNG	0.49	0.62	1.5604	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	TIMM23B--LINC00843	51	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7579	0.2824	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1651_LUNG	1	1	1.0403	TRUE	508	994	45	981	0	FALSE	ACH-000893
NCIH1651_LUNG	CTDSPL2--HEPHL1	37	48	CTDSPL2	1539	chr15:44719970:+	HEPHL1	28181	chr11:93778839:+	ONLY_REF_SPLICE	YES	62	0	0.58	1	0.5498	0.7133	CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,HEPHL1->chr11:93754527-93846917:+,hephaestin_like_1	NCIH1651_LUNG	0.58	1	1.2631	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	MT-TA--MT-TC	40	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5944	0.0446	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1651_LUNG	1	1	0.639	FALSE	462	80	0	856	0	FALSE	ACH-000893
NCIH1651_LUNG	TIMM23--RP11-464F9.1	29	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	179	1	0.16	0.97	0.431	0.0594	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1651_LUNG	0.16	0.97	0.4904	TRUE	519	3926	326	965	0	FALSE	ACH-000893
NCIH1651_LUNG	CEP89--FAM74A1	28	7	CEP89	10017	chr19:33430763:-	FAM74A1	29972	chr9:39906143:+	ONLY_REF_SPLICE	YES	35	0	0.5	1	0.4161	0.104	CEP89->centrosomal_protein_89,chr19:33369902-33462897:-,FAM74A1->chr9:39900346-39906219:+,family_with_sequence_similarity_74_member_A1	NCIH1651_LUNG	0.5	1	0.5201	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	TAB1--GRAP2	28	0	TAB1	1095	chr22:39795840:+	GRAP2	26140	chr22:40361994:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4161	0	TAB1->TGF-beta_activated_kinase_1/MAP3K7_binding_protein_1,chr22:39795746-39833065:+,GRAP2->GRB2-related_adaptor_protein_2,chr22:40297086-40369725:+	NCIH1651_LUNG	1	1	0.4161	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	PTGES3--PNRC2	22	22	PTGES3	1378	chr12:57081782:-	PNRC2	14789	chr1:24287930:+	ONLY_REF_SPLICE	YES	1676	206	0.03	0.18	0.3269	0.3269	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,PNRC2->chr1:24285599-24289952:+,proline_rich_nuclear_receptor_coactivator_2	NCIH1651_LUNG	0.03	0.18	0.6538	TRUE	0	0	0	1	0	FALSE	ACH-000893
NCIH1651_LUNG	ATP13A3--RP11-359H18.2	22	19	ATP13A3	32610	chr3:194134488:-	RP11-359H18.2	41616	chr19:23778924:+	ONLY_REF_SPLICE	YES	81	0	0.34	1	0.3269	0.2824	ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,RP11-359H18.2->chr19:23778924-23780961:+	NCIH1651_LUNG	0.34	1	0.6093	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	LRRC28--IQCH	22	16	LRRC28	7307	chr15:99828156:+	IQCH	49234	chr15:67677274:+	ONLY_REF_SPLICE	YES	17	1	0.69	0.97	0.3269	0.2378	{Klijn_CCL:Lung=1},LRRC28->chr15:99791567-99930934:+,leucine_rich_repeat_containing_28,IQCH->IQ_motif_containing_H,chr15:67547138-67794598:+	NCIH1651_LUNG	0.69	0.97	0.5647	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	OR51S1--TP53I11	23	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3418	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH1651_LUNG	1	1	0.3418	TRUE	402	216	10	229	0	FALSE	ACH-000893
NCIH1651_LUNG	LINC01057--ALG14	17	18	LINC01057	1326	chr1:95285512:-	ALG14	20484	chr1:95448862:-	ONLY_REF_SPLICE	YES	7	54	0.83	0.39	0.2526	0.2675	LINC01057->chr1:95104017-95285837:-,long_intergenic_non-protein_coding_RNA_1057,ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-	NCIH1651_LUNG	0.39	0.83	0.5201	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	MTMR10--TRPM1	19	9	MTMR10	17046	chr15:31239333:-	TRPM1	56333	chr15:31295273:-	ONLY_REF_SPLICE	YES	15	0	0.65	1	0.2824	0.1337	LOCAL_REARRANGEMENT:-:[9454],MTMR10->chr15:31231144-31283810:-,myotubularin_related_protein_10,TRPM1->Oncogene{Bushman},chr15:31293264-31453476:-,transient_receptor_potential_cation_channel_subfamily_M_member_1	NCIH1651_LUNG	0.65	1	0.4161	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RP11-123O10.4--GRIP1	18	10	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2675	0.1486	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1651_LUNG	1	1	0.4161	FALSE	416	2512	207	587	0	FALSE	ACH-000893
NCIH1651_LUNG	HSP90AB1--MT-RNR2	16	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2918	0	0.01	1	0.2378	0.0149	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1651_LUNG	0.01	1	0.2527	FALSE	13	9	0	364	0	FALSE	ACH-000893
NCIH1651_LUNG	LRIG2--CHIA	8	30	LRIG2	7626	chr1:113641407:+	CHIA	34738	chr1:111857162:+	ONLY_REF_SPLICE	YES	3	13	0.93	0.75	0.1189	0.4458	{Klijn_CCL:Lung=1},LRIG2->chr1:113615831-113674882:+,leucine-rich_repeats_and_immunoglobulin_like_domains_2,CHIA->chitinase,_acidic,chr1:111833484-111863188:+	NCIH1651_LUNG	0.75	0.93	0.5647	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	PML--MCTP2	13	10	PML	2742	chr15:74290817:+	MCTP2	38521	chr15:94899366:+	ONLY_REF_SPLICE	YES	17	19	0.57	0.55	0.1932	0.1486	PML->Oncogene{Bushman},chr15:74287014-74340153:+,promyelocytic_leukemia,MCTP2->chr15:94774767-95023632:+,multiple_C2_domains,_transmembrane_2	NCIH1651_LUNG	0.55	0.57	0.3418	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	MT-ND4--MT-ND4L	3	47	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	7	1	0.88	0.98	0.0446	0.6985	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1651_LUNG	0.88	0.98	0.7431	FALSE	344	826	44	306	0	FALSE	ACH-000893
NCIH1651_LUNG	LRIG2--CHIA	7	30	LRIG2	7626	chr1:113641407:+	CHIA	33035	chr1:111854311:+	ONLY_REF_SPLICE	YES	3	7	0.93	0.84	0.104	0.4458	{Klijn_CCL:Lung=1},LRIG2->chr1:113615831-113674882:+,leucine-rich_repeats_and_immunoglobulin_like_domains_2,CHIA->chitinase,_acidic,chr1:111833484-111863188:+	NCIH1651_LUNG	0.84	0.93	0.5498	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	MT-ND4--MT-ND4L	4	40	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	4	1	0.92	0.98	0.0594	0.5944	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1651_LUNG	0.92	0.98	0.6538	FALSE	344	826	44	306	0	FALSE	ACH-000893
NCIH1651_LUNG	CHEK2--UBE2L3	13	0	CHEK2	1654	chr22:29137757:-	UBE2L3	30245	chr22:21947150:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1932	0	CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3	NCIH1651_LUNG	1	1	0.1932	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	MT-ND4--MT-ND4L	3	37	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	54	0	0.43	1	0.0446	0.5498	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1651_LUNG	0.43	1	0.5944	FALSE	344	827	44	306	0	FALSE	ACH-000893
NCIH1651_LUNG	SLC31A1--CPNE2	9	13	SLC31A1	1151	chr9:115983958:+	CPNE2	32787	chr16:57168687:+	ONLY_REF_SPLICE	YES	37	118	0.37	0.16	0.1337	0.1932	SLC31A1->chr9:115983808-116028674:+,solute_carrier_family_31_member_1,CPNE2->chr16:57126449-57181878:+,copine_2	NCIH1651_LUNG	0.16	0.37	0.3269	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	DERA--RP11-405A12.2	11	2	DERA	1243	chr12:16064348:+	RP11-405A12.2	18775	chr12:20076132:+	ONLY_REF_SPLICE	YES	7	0	0.65	1	0.1635	0.0297	DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase,RP11-405A12.2->chr12:19928385-20162871:+	NCIH1651_LUNG	0.65	1	0.1932	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	MT-ND4--MT-ND4L	4	30	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	1	0.94	0.97	0.0594	0.4458	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1651_LUNG	0.94	0.97	0.5052	FALSE	344	821	44	306	0	FALSE	ACH-000893
NCIH1651_LUNG	PLA2G6--CHEK2	9	9	PLA2G6	5967	chr22:38565225:-	CHEK2	36919	chr22:29130715:-	ONLY_REF_SPLICE	YES	17	3	0.51	0.86	0.1337	0.1337	PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI,CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-	NCIH1651_LUNG	0.51	0.86	0.2674	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	FOXJ3--HYI	9	7	FOXJ3	7672	chr1:42730786:-	HYI	26050	chr1:43917990:-	ONLY_REF_SPLICE	YES	38	32	0.3	0.33	0.1337	0.104	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,HYI->chr1:43916824-43919660:-,hydroxypyruvate_isomerase_(putative)	NCIH1651_LUNG	0.3	0.33	0.2377	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	LSS--CHORDC1	8	11	LSS	15239	chr21:47625750:-	CHORDC1	29290	chr11:89951352:-	ONLY_REF_SPLICE	YES	55	476	0.26	0.04	0.1189	0.1635	LSS->chr21:47608055-47648738:-,lanosterol_synthase_(2,3-oxidosqualene-lanosterol_cyclase),CHORDC1->chr11:89934328-89956532:-,cysteine_and_histidine_rich_domain_containing_1	NCIH1651_LUNG	0.04	0.26	0.2824	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	NRIP1--AF127936.7	10	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.1486	0.0446	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1651_LUNG	0.87	1	0.1932	FALSE	292	1546	117	613	0	FALSE	ACH-000893
NCIH1651_LUNG	ARMC5--U91319.1	8	8	ARMC5	5195	chr16:31474238:+	U91319.1	16716	chr16:13656564:+	ONLY_REF_SPLICE	YES	9	0	0.64	1	0.1189	0.1189	ARMC5->armadillo_repeat_containing_5,chr16:31469401-31478487:+,U91319.1->chr16:13340173-13656775:+	NCIH1651_LUNG	0.64	1	0.2378	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RP11-680G10.1--GSE1	9	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	46	1	0.21	0.1337	0.0446	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1651_LUNG	0.21	1	0.1783	TRUE	465	1949	224	605	0	FALSE	ACH-000893
NCIH1651_LUNG	RBMS3--PHF16	9	2	RBMS3	7777	chr3:29781368:+	PHF16	34010	chrX:46844285:+	ONLY_REF_SPLICE	YES	16	4	0.41	0.73	0.1337	0.0297	RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+,PHF16->chrX:46771711-46920641:+	NCIH1651_LUNG	0.41	0.73	0.1634	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	AP000525.9--LA16c-60G3.6	9	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1337	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH1651_LUNG	1	1	0.1337	TRUE	0	42	0	133	42	FALSE	ACH-000893
NCIH1651_LUNG	MT-ND4--MT-ND4L	5	16	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	664	0	0.03	1	0.0743	0.2378	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1651_LUNG	0.03	1	0.3121	FALSE	344	827	44	306	0	FALSE	ACH-000893
NCIH1651_LUNG	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1337	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1651_LUNG	1	1	0.1337	FALSE	462	80	0	856	0	FALSE	ACH-000893
NCIH1651_LUNG	SLC31A1--CPNE2	5	16	SLC31A1	1151	chr9:115983958:+	CPNE2	30633	chr16:57161761:+	ONLY_REF_SPLICE	YES	37	91	0.36	0.19	0.0743	0.2378	SLC31A1->chr9:115983808-116028674:+,solute_carrier_family_31_member_1,CPNE2->chr16:57126449-57181878:+,copine_2	NCIH1651_LUNG	0.19	0.36	0.3121	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	NRIP1--AF127936.7	7	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.35	1	0.104	0.104	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1651_LUNG	0.35	1	0.208	FALSE	164	806	69	479	0	FALSE	ACH-000893
NCIH1651_LUNG	RP11-680G10.1--GSE1	7	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	18	1	0.4	0.104	0.0743	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1651_LUNG	0.4	1	0.1783	TRUE	458	1351	185	561	0	FALSE	ACH-000893
NCIH1651_LUNG	MT-ND4--MT-ND4L	6	8	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	751	0	0.02	1	0.0892	0.1189	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1651_LUNG	0.02	1	0.2081	FALSE	344	827	44	306	0	FALSE	ACH-000893
NCIH1651_LUNG	XXbac-BPG252P9.9--TUBBP2	8	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1189	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH1651_LUNG	1	1	0.1189	TRUE	0	1	0	48	1	FALSE	ACH-000893
NCIH1651_LUNG	ATP13A3--RP11-359H18.2	3	19	ATP13A3	34170	chr3:194132928:-	RP11-359H18.2	41616	chr19:23778924:+	ONLY_REF_SPLICE	YES	82	0	0.21	1	0.0446	0.2824	ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,RP11-359H18.2->chr19:23778924-23780961:+	NCIH1651_LUNG	0.21	1	0.327	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	MT-TA--MT-TC	7	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.104	0.0446	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1651_LUNG	1	1	0.1486	FALSE	462	80	0	856	0	FALSE	ACH-000893
NCIH1651_LUNG	LINC01057--ALG14	3	18	LINC01057	1326	chr1:95285512:-	ALG14	20157	chr1:95449189:-	ONLY_REF_SPLICE	YES	7	51	0.75	0.29	0.0446	0.2675	LINC01057->chr1:95104017-95285837:-,long_intergenic_non-protein_coding_RNA_1057,ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-	NCIH1651_LUNG	0.29	0.75	0.3121	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	PDE4D--FAM19A2	6	5	PDE4D	30827	chr5:58476421:-	FAM19A2	79403	chr12:62417560:-	ONLY_REF_SPLICE	YES	14	0	0.44	1	0.0892	0.0743	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2	NCIH1651_LUNG	0.44	1	0.1635	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	XXbac-BPG252P9.9--TUBBP2	7	1	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	YES	4320	0	0	1	0.104	0.0149	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH1651_LUNG	0	1	0.1189	TRUE	0	1	0	48	1	FALSE	ACH-000893
NCIH1651_LUNG	IQCK--PRKCB	6	4	IQCK	12415	chr16:19838459:+	PRKCB	22426	chr16:24043457:+	ONLY_REF_SPLICE	YES	14	0	0.42	1	0.0892	0.0594	IQCK->IQ_motif_containing_K,chr16:19727778-19868907:+,PRKCB->chr16:23847322-24231932:+,protein_kinase_C_beta	NCIH1651_LUNG	0.42	1	0.1486	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	MT-ND4--MT-ND4L	5	8	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	25	0	0.34	1	0.0743	0.1189	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1651_LUNG	0.34	1	0.1932	FALSE	344	826	44	306	0	FALSE	ACH-000893
NCIH1651_LUNG	NIPA2--POLA1	7	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.104	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	NCIH1651_LUNG	1	1	0.104	TRUE	46	1352	75	139	0	FALSE	ACH-000893
NCIH1651_LUNG	RP11-96H19.1--RP11-446N19.1	6	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0892	0.0594	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1651_LUNG	0.91	1	0.1486	FALSE	515	4851	409	746	0	FALSE	ACH-000893
NCIH1651_LUNG	ZNF738--CHMP1A	7	0	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.104	0	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH1651_LUNG	1	1	0.104	TRUE	1	20	1	28	3	FALSE	ACH-000893
NCIH1651_LUNG	HSP90AB1--MT-RNR2	6	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2922	0	0	1	0.0892	0.0297	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1651_LUNG	0	1	0.1189	FALSE	13	9	0	364	0	FALSE	ACH-000893
NCIH1651_LUNG	PTGES3--PNRC2	1	22	PTGES3	2126	chr12:57081034:-	PNRC2	14789	chr1:24287930:+	ONLY_REF_SPLICE	NO	1754	206	0.01	0.1	0.0149	0.3269	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,PNRC2->chr1:24285599-24289952:+,proline_rich_nuclear_receptor_coactivator_2	NCIH1651_LUNG	0.01	0.1	0.3418	TRUE	0	0	0	1	0	FALSE	ACH-000893
NCIH1651_LUNG	NRIP1--AF127936.7	5	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.33	1	0.0743	0.0743	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1651_LUNG	0.33	1	0.1486	FALSE	125	705	46	456	0	FALSE	ACH-000893
NCIH1651_LUNG	ZNFX1--ECI1	4	9	ZNFX1	1497	chr20:47894467:-	ECI1	30844	chr16:2296987:-	ONLY_REF_SPLICE	YES	3	5	0.81	0.72	0.0594	0.1337	ZNFX1->chr20:47854483-47894963:-,zinc_finger_NFX1-type_containing_1,ECI1->chr16:2289396-2302301:-,enoyl-CoA_delta_isomerase_1	NCIH1651_LUNG	0.72	0.81	0.1931	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	CALM3--MT-ND4L	5	4	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	810	0	0.01	1	0.0743	0.0594	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1651_LUNG	0.01	1	0.1337	FALSE	1	1	0	107	0	FALSE	ACH-000893
NCIH1651_LUNG	CHSY3--HSPA8P4	4	6	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	13	0	0.43	1	0.0594	0.0892	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	NCIH1651_LUNG	0.43	1	0.1486	FALSE	89	26	1	44	0	FALSE	ACH-000893
NCIH1651_LUNG	LETM1--MFSD10	5	2	LETM1	1379	chr4:1857596:-	MFSD10	26793	chr4:2935671:-	ONLY_REF_SPLICE	YES	9	99	0.44	0.07	0.0743	0.0297	LETM1->chr4:1813206-1857974:-,leucine_zipper_and_EF-hand_containing_transmembrane_protein_1,MFSD10->chr4:2932288-2936586:-,major_facilitator_superfamily_domain_containing_10	NCIH1651_LUNG	0.07	0.44	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	CTDSPL2--HEPHL1	2	13	CTDSPL2	1539	chr15:44719970:+	HEPHL1	29426	chr11:93796674:+	ONLY_REF_SPLICE	YES	62	45	0.19	0.25	0.0297	0.1932	CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,HEPHL1->chr11:93754527-93846917:+,hephaestin_like_1	NCIH1651_LUNG	0.19	0.25	0.2229	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	MT-ATP6--MT-CO1	4	4	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	7786	19236	0	0	0.0594	0.0594	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1651_LUNG	0	0	0.1188	FALSE	183	104	9	328	0	FALSE	ACH-000893
NCIH1651_LUNG	ZFAND3--RP1-153P14.8	5	0	ZFAND3	1518	chr6:37787792:+	RP1-153P14.8	18691	chr6:37502052:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0743	0	ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3,RP1-153P14.8->chr6:37475124-37503392:+	NCIH1651_LUNG	1	1	0.0743	TRUE	0	1	0	1	1	TRUE	ACH-000893
NCIH1651_LUNG	CTDSPL2--HEPHL1	4	3	CTDSPL2	1459	chr15:44719890:+	HEPHL1	28181	chr11:93778839:+	ONLY_REF_SPLICE	YES	5	0	0.58	1	0.0594	0.0446	CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,HEPHL1->chr11:93754527-93846917:+,hephaestin_like_1	NCIH1651_LUNG	0.58	1	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	PDE4D--FAM19A2	4	3	PDE4D	30827	chr5:58476421:-	FAM19A2	82676	chr12:62261207:-	ONLY_REF_SPLICE	YES	14	1	0.33	0.88	0.0594	0.0446	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2	NCIH1651_LUNG	0.33	0.88	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	BTBD8--AC068533.7	4	2	BTBD8	3811	chr1:92568226:+	AC068533.7	14394	chr7:65553794:+	ONLY_REF_SPLICE	YES	4	0	0.6	1	0.0594	0.0297	BTBD8->BTB_domain_containing_8,chr1:92545862-92613393:+,AC068533.7->chr7:65552756-65617228:+	NCIH1651_LUNG	0.6	1	0.0891	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	FEM1C--CCDC112	4	2	FEM1C	4061	chr5:114861199:-	CCDC112	13575	chr5:114620605:-	INCL_NON_REF_SPLICE	YES	15	11	0.29	0.35	0.0594	0.0297	FEM1C->chr5:114856608-114880591:-,fem-1_homolog_C,CCDC112->chr5:114602885-114632528:-,coiled-coil_domain_containing_112	NCIH1651_LUNG	0.29	0.35	0.0891	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	FTH1--ACTB	4	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	2470	0	0	1	0.0594	0.0297	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH1651_LUNG	0	1	0.0891	FALSE	1	0	0	97	0	FALSE	ACH-000893
NCIH1651_LUNG	PDE4D--RP11-769N19.2	4	2	PDE4D	30827	chr5:58476421:-	RP11-769N19.2	59563	chr12:62534193:-	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.0594	0.0297	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-769N19.2->chr12:62533780-62539424:-	NCIH1651_LUNG	0.3	1	0.0891	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0446	0.0743	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1651_LUNG	0.89	1	0.1189	FALSE	407	2205	196	549	0	FALSE	ACH-000893
NCIH1651_LUNG	ANO2--STRAP	4	0	ANO2	23770	chr12:5841686:-	STRAP	46200	chr12:16046981:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0594	0	ANO2->anoctamin_2,chr12:5641035-6055398:-,STRAP->chr12:16035325-16056412:+,serine/threonine_kinase_receptor_associated_protein	NCIH1651_LUNG	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	FAT3--NPAT	4	0	FAT3	4309	chr11:92088570:+	NPAT	53012	chr11:108064744:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0594	0	FAT3->FAT_atypical_cadherin_3,chr11:92085262-92629618:+,NPAT->chr11:108027942-108093369:-,nuclear_protein,_co-activator_of_histone_transcription	NCIH1651_LUNG	1	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	MT-ATP6--MT-CO1	3	4	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7888	20069	0	0	0.0446	0.0594	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1651_LUNG	0	0	0.104	FALSE	183	104	9	328	0	FALSE	ACH-000893
NCIH1651_LUNG	RP11-92G12.3--JPX	4	0	RP11-92G12.3	2238	chr1:200659558:+	JPX	9792	chrX:73214675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0594	0	GTEx_FI:{Esophagus=[count:2=pct:0.5],Spleen=[count:1=pct:0.9]},RP11-92G12.3->chr1:200638635-200663378:+,JPX->JPX_transcript,_XIST_activator_(non-protein_coding),chrX:73164159-73290243:+	NCIH1651_LUNG	1	1	0.0594	TRUE	3	200	13	1	0	FALSE	ACH-000893
NCIH1651_LUNG	LRRC28--IQCH	1	11	LRRC28	7307	chr15:99828156:+	IQCH	50318	chr15:67681169:+	ONLY_REF_SPLICE	NO	17	2	0.41	0.86	0.0149	0.1635	{Klijn_CCL:Lung=1},LRRC28->chr15:99791567-99930934:+,leucine_rich_repeat_containing_28,IQCH->IQ_motif_containing_H,chr15:67547138-67794598:+	NCIH1651_LUNG	0.41	0.86	0.1784	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RNF138--MCM3AP	1	11	RNF138	2032	chr18:29672849:+	MCM3AP	20436	chr21:47697631:-	ONLY_REF_SPLICE	YES	109	127	0.1	0.09	0.0149	0.1635	{Klijn_CCL:Lung=1},RNF138->chr18:29671818-29711524:+,ring_finger_protein_138,MCM3AP->chr21:47655047-47706211:-,minichromosome_maintenance_complex_component_3_associated_protein	NCIH1651_LUNG	0.09	0.1	0.1784	TRUE	0	0	0	1	0	FALSE	ACH-000893
NCIH1651_LUNG	PLA2G6--CHEK2	1	9	PLA2G6	8398	chr22:38559422:-	CHEK2	36919	chr22:29130715:-	ONLY_REF_SPLICE	NO	17	3	0.37	0.77	0.0149	0.1337	PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI,CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-	NCIH1651_LUNG	0.37	0.77	0.1486	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RP11-408A13.2--NFIB	3	1	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	23	1	0.15	0.0446	0.0149	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	NCIH1651_LUNG	0.15	1	0.0595	TRUE	0	14	0	20	14	FALSE	ACH-000893
NCIH1651_LUNG	RP11-444D3.1--SOX5	2	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0.0743	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1651_LUNG	1	1	0.104	TRUE	477	1352	189	275	0	FALSE	ACH-000893
NCIH1651_LUNG	XXbac-BPG252P9.9--TUBBP2	3	1	XXbac-BPG252P9.9	1174	chr6:30691481:-	TUBBP2	4909	chr13:41959184:-	INCL_NON_REF_SPLICE	NO	4524	0	0	1	0.0446	0.0149	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH1651_LUNG	0	1	0.0595	FALSE	0	1	0	48	1	FALSE	ACH-000893
NCIH1651_LUNG	ADAMTS17--CTD-3185P2.1	3	0	ADAMTS17	4299	chr15:100871094:-	CTD-3185P2.1	38035	chr15:66783055:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	ADAMTS17->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_17,chr15:100511794-100882210:-,CTD-3185P2.1->chr15:66782086-66784447:-	NCIH1651_LUNG	1	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	C5orf42--CTD-2353F22.1	3	0	C5orf42	56360	chr5:37108395:-	CTD-2353F22.1	62508	chr5:36705953:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	C5orf42->chr5:37106330-37249530:-,chromosome_5_open_reading_frame_42,CTD-2353F22.1->chr5:36666316-36725297:-	NCIH1651_LUNG	1	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	CHEK2--UBE2L3	3	0	CHEK2	1654	chr22:29137757:-	UBE2L3	28377	chr22:21921799:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3	NCIH1651_LUNG	1	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0297	0.0594	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1651_LUNG	1	1	0.0891	FALSE	467	2173	244	435	0	FALSE	ACH-000893
NCIH1651_LUNG	LSS--CHORDC1	1	6	LSS	14403	chr21:47626586:-	CHORDC1	29290	chr11:89951352:-	ONLY_REF_SPLICE	YES	70	476	0.09	0.01	0.0149	0.0892	LSS->chr21:47608055-47648738:-,lanosterol_synthase_(2,3-oxidosqualene-lanosterol_cyclase),CHORDC1->chr11:89934328-89956532:-,cysteine_and_histidine_rich_domain_containing_1	NCIH1651_LUNG	0.01	0.09	0.1041	TRUE	0	0	0	1	0	FALSE	ACH-000893
NCIH1651_LUNG	PDE4D--FAM19A2	1	5	PDE4D	30827	chr5:58476421:-	FAM19A2	78262	chr12:62464343:-	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.0149	0.0743	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2	NCIH1651_LUNG	0.3	1	0.0892	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RP11-319G9.5--WWOX	2	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	27	1	0.1	0.0297	0.0149	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	NCIH1651_LUNG	0.1	1	0.0446	FALSE	154	425	28	76	0	FALSE	ACH-000893
NCIH1651_LUNG	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0149	0.0743	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1651_LUNG	1	1	0.0892	FALSE	192	492	57	212	0	FALSE	ACH-000893
NCIH1651_LUNG	AC104389.28--HBE1	2	0	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NCIH1651_LUNG	1	1	0.0297	TRUE	0	11	0	26	8	FALSE	ACH-000893
NCIH1651_LUNG	AC104389.28--HBE1	2	0	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NCIH1651_LUNG	1	1	0.0297	TRUE	0	35	0	55	35	FALSE	ACH-000893
NCIH1651_LUNG	C17orf76-AS1--RTF1	2	0	C17orf76-AS1	1882	chr17:16343017:+	RTF1	15587	chr15:41730519:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	C17orf76-AS1->chr17:16342136-16381992:+,RTF1->RTF1_homolog,_Paf1/RNA_polymerase_II_complex_component,chr15:41700606-41775761:+	NCIH1651_LUNG	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	EPS8L2--ERAL1	2	0	EPS8L2	6547	chr11:710486:+	ERAL1	19573	chr17:27183523:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	EPS8L2->EPS8_like_2,chr11:694438-727727:+,ERAL1->Era_like_12S_mitochondrial_rRNA_chaperone_1,chr17:27181956-27188085:+	NCIH1651_LUNG	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	FOXJ3--HYI	1	4	FOXJ3	7672	chr1:42730786:-	HYI	26356	chr1:43917684:-	ONLY_REF_SPLICE	NO	38	41	0.12	0.11	0.0149	0.0594	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,HYI->chr1:43916824-43919660:-,hydroxypyruvate_isomerase_(putative)	NCIH1651_LUNG	0.11	0.12	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	METTL17--CNOT1	2	0	METTL17	3833	chr14:21460781:+	CNOT1	49782	chr16:58566299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	METTL17->chr14:21457929-21465189:+,methyltransferase_like_17,CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-	NCIH1651_LUNG	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RCC1--ANAPC1	2	0	RCC1	2175	chr1:28834672:+	ANAPC1	36614	chr2:112596089:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-	NCIH1651_LUNG	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	RP11-123O10.4--GRIP1	1	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0149	0.0594	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1651_LUNG	1	1	0.0743	FALSE	93	270	15	244	0	FALSE	ACH-000893
NCIH1651_LUNG	RP4-724E16.2--PMS1	2	0	RP4-724E16.2	3555	chr20:52179406:+	PMS1	14281	chr2:190660495:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	RP4-724E16.2->chr20:52169309-52191847:+,PMS1->Oncogene{Bushman},PMS1_homolog_1,_mismatch_repair_system_component,chr2:190649107-190742355:+	NCIH1651_LUNG	1	1	0.0297	TRUE	0	1	0	1	1	TRUE	ACH-000893
NCIH1651_LUNG	FLNA--ALPPL2	1	3	FLNA	15473	chrX:153583193:-	ALPPL2	25218	chr2:233271996:+	ONLY_REF_SPLICE	YES	1139	5795	0	0	0.0149	0.0446	FLNA->chrX:153576892-153603006:-,filamin_A,ALPPL2->alkaline_phosphatase,_placental_like_2,chr2:233271553-233275424:+	NCIH1651_LUNG	0	0	0.0595	FALSE	0	0	0	1	0	FALSE	ACH-000893
NCIH1651_LUNG	RNF138--MCM3AP	1	3	RNF138	2032	chr18:29672849:+	MCM3AP	21627	chr21:47695239:-	ONLY_REF_SPLICE	YES	109	146	0.04	0.03	0.0149	0.0446	{Klijn_CCL:Lung=1},RNF138->chr18:29671818-29711524:+,ring_finger_protein_138,MCM3AP->chr21:47655047-47706211:-,minichromosome_maintenance_complex_component_3_associated_protein	NCIH1651_LUNG	0.03	0.04	0.0595	TRUE	0	0	0	1	0	FALSE	ACH-000893
NCIH1651_LUNG	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0149	0.0446	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1651_LUNG	1	1	0.0595	TRUE	274	363	69	150	0	FALSE	ACH-000893
NCIH1651_LUNG	CTPS1--ATP5F1	1	2	CTPS1	8442	chr1:41454382:+	ATP5F1	30112	chr1:111998849:+	ONLY_REF_SPLICE	YES	332	578	0.01	0.01	0.0149	0.0297	CTPS1->CTP_synthase_1,chr1:41445007-41478235:+,ATP5F1->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_B1,chr1:111991486-112005395:+	NCIH1651_LUNG	0.01	0.01	0.0446	FALSE	0	0	0	1	0	FALSE	ACH-000893
NCIH1651_LUNG	DERA--RP11-405A12.2	1	2	DERA	1582	chr12:16064687:+	RP11-405A12.2	18775	chr12:20076132:+	ONLY_REF_SPLICE	YES	17	0	0.15	1	0.0149	0.0297	DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase,RP11-405A12.2->chr12:19928385-20162871:+	NCIH1651_LUNG	0.15	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	FLNA--ALPPL2	1	2	FLNA	16147	chrX:153582519:-	ALPPL2	27506	chr2:233274284:+	ONLY_REF_SPLICE	NO	1143	3903	0	0	0.0149	0.0297	FLNA->chrX:153576892-153603006:-,filamin_A,ALPPL2->alkaline_phosphatase,_placental_like_2,chr2:233271553-233275424:+	NCIH1651_LUNG	0	0	0.0446	FALSE	0	0	0	1	0	FALSE	ACH-000893
NCIH1651_LUNG	PML--MCTP2	1	2	PML	2742	chr15:74290817:+	MCTP2	40817	chr15:94910834:+	ONLY_REF_SPLICE	YES	17	27	0.15	0.1	0.0149	0.0297	PML->Oncogene{Bushman},chr15:74287014-74340153:+,promyelocytic_leukemia,MCTP2->chr15:94774767-95023632:+,multiple_C2_domains,_transmembrane_2	NCIH1651_LUNG	0.1	0.15	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000893
NCIH1651_LUNG	POLR3K--FAM205A	1	2	POLR3K	2738	chr16:101558:-	FAM205A	9275	chr9:34728079:-	ONLY_REF_SPLICE	YES	395	0	0.01	1	0.0149	0.0297	POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K,FAM205A->chr9:34723052-34729464:-,family_with_sequence_similarity_205_member_A	NCIH1651_LUNG	0.01	1	0.0446	FALSE	0	0	0	1	0	FALSE	ACH-000893
NCIH1651_LUNG	ATP13A3--RP11-359H18.2	1	1	ATP13A3	28835	chr3:194147804:-	RP11-359H18.2	41616	chr19:23778924:+	ONLY_REF_SPLICE	YES	304	0	0.01	1	0.0149	0.0149	ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,RP11-359H18.2->chr19:23778924-23780961:+	NCIH1651_LUNG	0.01	1	0.0298	FALSE	0	0	0	1	0	FALSE	ACH-000893
NCIH1651_LUNG	CPSF6--C9orf3	1	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	190	510	0.01	0	0.0149	0.0149	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	NCIH1651_LUNG	0	0.01	0.0298	FALSE	53	99	2	44	0	FALSE	ACH-000893
NCIH1651_LUNG	GPR155--ATF2	1	1	GPR155	15515	chr2:175309809:-	ATF2	42326	chr2:175945493:-	ONLY_REF_SPLICE	YES	7	75	0.22	0.03	0.0149	0.0149	GPR155->G_protein-coupled_receptor_155,chr2:175296966-175351822:-,ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-	NCIH1651_LUNG	0.03	0.22	0.0298	TRUE	0	0	0	1	0	FALSE	ACH-000893
NCIH1651_LUNG	GPR155--ATF2	1	1	GPR155	15515	chr2:175309809:-	ATF2	44081	chr2:175939563:-	ONLY_REF_SPLICE	YES	7	82	0.22	0.02	0.0149	0.0149	GPR155->G_protein-coupled_receptor_155,chr2:175296966-175351822:-,ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-	NCIH1651_LUNG	0.02	0.22	0.0298	TRUE	0	0	0	1	0	FALSE	ACH-000893
NCIH1651_LUNG	HSPA9--CANX	1	1	HSPA9	5150	chr5:137904614:-	CANX	35728	chr5:179153681:+	ONLY_REF_SPLICE	YES	990	2250	0	0	0.0149	0.0149	HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9,CANX->calnexin,chr5:179105629-179157926:+	NCIH1651_LUNG	0	0	0.0298	FALSE	0	0	0	1	0	FALSE	ACH-000893
NCIH1651_LUNG	RP1-34H18.1--NAV3	1	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	3	1	0.4	0.0149	0.0149	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH1651_LUNG	0.4	1	0.0298	TRUE	254	575	65	124	0	FALSE	ACH-000893
HS229T_FIBROBLAST	TIMM23B--LINC00843	140	37	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3924	0.368	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS229T_FIBROBLAST	1	1	1.7604	TRUE	508	994	45	981	0	FALSE	ACH-000131
HS229T_FIBROBLAST	TIMM23--RP11-464F9.1	82	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	323	0	0.21	1	0.8155	0.0298	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS229T_FIBROBLAST	0.21	1	0.8453	TRUE	519	3926	326	965	0	FALSE	ACH-000131
HS229T_FIBROBLAST	MT-TA--MT-TN	55	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.547	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS229T_FIBROBLAST	1	1	0.547	FALSE	369	2501	205	193	0	FALSE	ACH-000131
HS229T_FIBROBLAST	RP11-680G10.1--GSE1	51	13	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	14	1	0.82	0.5072	0.1293	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS229T_FIBROBLAST	0.82	1	0.6365	TRUE	465	1949	224	605	0	FALSE	ACH-000131
HS229T_FIBROBLAST	RP11-680G10.1--GSE1	48	16	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.97	0.4774	0.1591	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS229T_FIBROBLAST	0.97	1	0.6365	TRUE	458	1351	185	561	0	FALSE	ACH-000131
HS229T_FIBROBLAST	MT-TA--MT-TC	37	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.368	0.0099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS229T_FIBROBLAST	1	1	0.3779	FALSE	462	80	0	856	0	FALSE	ACH-000131
HS229T_FIBROBLAST	ZNF654--HMGB2	33	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3282	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HS229T_FIBROBLAST	1	1	0.3282	TRUE	0	0	0	518	0	FALSE	ACH-000131
HS229T_FIBROBLAST	MT-TA--MT-TN	12	38	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1193	0.3779	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS229T_FIBROBLAST	1	1	0.4972	FALSE	369	2501	205	193	0	FALSE	ACH-000131
HS229T_FIBROBLAST	C15orf57--CBX3	18	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	42	34	0.39	0.44	0.179	0.0895	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS229T_FIBROBLAST	0.39	0.44	0.2685	TRUE	267	562	48	632	0	FALSE	ACH-000131
HS229T_FIBROBLAST	MT-TA--MT-TN	8	45	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0796	0.4476	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS229T_FIBROBLAST	1	1	0.5272	FALSE	369	2501	205	193	0	FALSE	ACH-000131
HS229T_FIBROBLAST	IGFBP4--NPM1	15	3	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	1917	0	0.01	1	0.1492	0.0298	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HS229T_FIBROBLAST	0.01	1	0.179	TRUE	0	0	0	38	0	FALSE	ACH-000131
HS229T_FIBROBLAST	MT-TA--MT-TN	7	29	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0696	0.2884	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS229T_FIBROBLAST	1	1	0.358	FALSE	369	2501	205	193	0	FALSE	ACH-000131
HS229T_FIBROBLAST	MT-ND6--MT-TE	13	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1293	0.0199	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS229T_FIBROBLAST	0.94	1	0.1492	FALSE	499	1288	110	792	0	FALSE	ACH-000131
HS229T_FIBROBLAST	PDE6B--PPP2R2D	13	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1293	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	HS229T_FIBROBLAST	1	1	0.1293	TRUE	7	65	3	22	0	FALSE	ACH-000131
HS229T_FIBROBLAST	MT-TA--MT-TN	9	13	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0895	0.1293	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS229T_FIBROBLAST	1	1	0.2188	FALSE	369	2501	205	193	0	FALSE	ACH-000131
HS229T_FIBROBLAST	MT-ND6--MT-TE	11	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1094	0.0199	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS229T_FIBROBLAST	0.93	1	0.1293	FALSE	499	1288	110	792	0	FALSE	ACH-000131
HS229T_FIBROBLAST	PRR16--CTD-2334D19.1	10	4	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	118	0	0.11	1	0.0995	0.0398	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS229T_FIBROBLAST	0.11	1	0.1393	FALSE	56	216	12	147	0	FALSE	ACH-000131
HS229T_FIBROBLAST	PDE6B--PPP2R2D	10	0	PDE6B	1510	chr4:619882:+	PPP2R2D	25830	chr10:133753533:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0995	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	HS229T_FIBROBLAST	1	1	0.0995	TRUE	5	45	2	9	0	FALSE	ACH-000131
HS229T_FIBROBLAST	C15orf57--CBX3	8	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	38	35	0.28	0.3	0.0796	0.0696	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS229T_FIBROBLAST	0.28	0.3	0.1492	TRUE	267	562	48	632	0	FALSE	ACH-000131
HS229T_FIBROBLAST	MT-TA--MT-TN	4	18	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0.179	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS229T_FIBROBLAST	1	1	0.2188	FALSE	369	2501	205	193	0	FALSE	ACH-000131
HS229T_FIBROBLAST	MT-TA--MT-TN	8	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0796	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS229T_FIBROBLAST	1	1	0.0796	FALSE	369	2501	205	193	0	FALSE	ACH-000131
HS229T_FIBROBLAST	MT-ND6--MT-TE	4	13	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0398	0.1293	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS229T_FIBROBLAST	0.94	1	0.1691	FALSE	499	1288	110	792	0	FALSE	ACH-000131
HS229T_FIBROBLAST	NRIP1--AF127936.7	7	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.53	1	0.0696	0.0099	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS229T_FIBROBLAST	0.53	1	0.0795	FALSE	292	1546	117	613	0	FALSE	ACH-000131
HS229T_FIBROBLAST	FTH1--ACTB	7	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0696	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS229T_FIBROBLAST	1	1	0.0696	TRUE	1	0	0	97	0	FALSE	ACH-000131
HS229T_FIBROBLAST	MT-ND6--MT-TE	4	12	MT-ND6	1196	chrM:14478:-	MT-TE	4557	chrM:14711:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0398	0.1193	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS229T_FIBROBLAST	0.94	1	0.1591	FALSE	499	1288	110	792	0	FALSE	ACH-000131
HS229T_FIBROBLAST	COL1A1--NPM1	5	6	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	4015	0	0	1	0.0497	0.0597	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HS229T_FIBROBLAST	0	1	0.1094	TRUE	0	0	0	31	0	FALSE	ACH-000131
HS229T_FIBROBLAST	RP11-444D3.1--SOX5	5	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0497	0.0398	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS229T_FIBROBLAST	1	1	0.0895	TRUE	477	1352	189	275	0	FALSE	ACH-000131
HS229T_FIBROBLAST	MT-ND6--MT-TE	3	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0298	0.0895	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS229T_FIBROBLAST	0.92	1	0.1193	FALSE	499	1288	110	792	0	FALSE	ACH-000131
HS229T_FIBROBLAST	MT-TA--MT-TC	5	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0.0099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS229T_FIBROBLAST	1	1	0.0596	FALSE	462	80	0	856	0	FALSE	ACH-000131
HS229T_FIBROBLAST	MT-TA--MT-TN	5	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS229T_FIBROBLAST	1	1	0.0497	FALSE	369	2501	205	193	0	FALSE	ACH-000131
HS229T_FIBROBLAST	VIM--TMSB4X	5	0	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS229T_FIBROBLAST	1	1	0.0497	TRUE	0	0	0	15	0	TRUE	ACH-000131
HS229T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0398	0.0199	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS229T_FIBROBLAST	0.75	1	0.0597	FALSE	407	2205	196	549	0	FALSE	ACH-000131
HS229T_FIBROBLAST	JUN--MT2A	4	0	JUN	2308	chr1:59248478:-	MT2A	7705	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	JUN->ArcherDX_panel,FoundationOne_panel,Jun_proto-oncogene,_AP-1_transcription_factor_subunit,Oncogene{Bushman},chr1:59246465-59249785:-,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS229T_FIBROBLAST	1	1	0.0398	TRUE	0	0	0	6	0	TRUE	ACH-000131
HS229T_FIBROBLAST	RP4-565E6.1--HYDIN	3	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0.0099	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS229T_FIBROBLAST	1	1	0.0397	TRUE	456	1387	91	133	0	FALSE	ACH-000131
HS229T_FIBROBLAST	FTH1--ACTB	3	0	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS229T_FIBROBLAST	1	1	0.0298	TRUE	1	0	0	97	0	FALSE	ACH-000131
HS229T_FIBROBLAST	MT-TA--MT-TN	3	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS229T_FIBROBLAST	1	1	0.0298	FALSE	369	2501	205	193	0	FALSE	ACH-000131
HS229T_FIBROBLAST	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	HS229T_FIBROBLAST	1	1	0.0298	TRUE	22	156	2	142	0	FALSE	ACH-000131
HS229T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0199	0.0199	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS229T_FIBROBLAST	0.67	1	0.0398	FALSE	515	4851	409	746	0	FALSE	ACH-000131
HS229T_FIBROBLAST	NCOR2--UBC	2	1	NCOR2	11484	chr12:124934361:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	59	104	0.05	0.03	0.0199	0.0099	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HS229T_FIBROBLAST	0.03	0.05	0.0298	TRUE	12	15	2	11	0	FALSE	ACH-000131
HS229T_FIBROBLAST	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.1	1	0.0199	0.0099	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS229T_FIBROBLAST	0.1	1	0.0298	FALSE	125	705	46	456	0	FALSE	ACH-000131
HS229T_FIBROBLAST	FARSB--WDFY1	2	0	FARSB	2378	chr2:223513459:-	WDFY1	31688	chr2:224759056:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	FARSB->chr2:223435255-223521056:-,phenylalanyl-tRNA_synthetase_beta_subunit,WDFY1->WD_repeat_and_FYVE_domain_containing_1,chr2:224720433-224810104:-	HS229T_FIBROBLAST	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000131
HS229T_FIBROBLAST	LARP1--MATR3	2	0	LARP1	19930	chr5:154191200:+	MATR3	45337	chr5:138650364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+,MATR3->chr5:138609441-138667360:+,matrin_3	HS229T_FIBROBLAST	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000131
HS229T_FIBROBLAST	RCC1--PPP1CB	2	0	RCC1	2175	chr1:28834672:+	PPP1CB	26980	chr2:29016729:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta	HS229T_FIBROBLAST	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000131
HS229T_FIBROBLAST	RP11-444D3.1--SOX5	1	4	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0099	0.0398	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS229T_FIBROBLAST	1	1	0.0497	TRUE	274	363	69	150	0	FALSE	ACH-000131
HS229T_FIBROBLAST	RP11-444D3.1--SOX5	1	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0099	0.0398	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS229T_FIBROBLAST	1	1	0.0497	TRUE	160	277	29	98	0	FALSE	ACH-000131
HS229T_FIBROBLAST	SOX2-OT--CCDC50	2	0	SOX2-OT	1083	chr3:180707640:+	CCDC50	42293	chr3:191078858:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+,CCDC50->chr3:191046866-191116459:+,coiled-coil_domain_containing_50	HS229T_FIBROBLAST	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000131
HS229T_FIBROBLAST	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	34	0	0.11	1	0.0099	0.0298	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS229T_FIBROBLAST	0.11	1	0.0397	FALSE	164	806	69	479	0	FALSE	ACH-000131
HS229T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.67	1	0.0099	0.0298	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS229T_FIBROBLAST	0.67	1	0.0397	FALSE	192	492	57	212	0	FALSE	ACH-000131
HS229T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	2	0	0.67	1	0.0099	0.0298	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS229T_FIBROBLAST	0.67	1	0.0397	FALSE	467	2173	244	435	0	FALSE	ACH-000131
HS229T_FIBROBLAST	RP11-634B7.4--TRIM58	1	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	3	1	0.4	0.0099	0.0099	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	HS229T_FIBROBLAST	0.4	1	0.0198	TRUE	158	633	76	73	0	FALSE	ACH-000131
HS229T_FIBROBLAST	TLN2--ANXA2	1	1	TLN2	1160	chr15:62682884:+	ANXA2	89373	chr15:60678285:-	ONLY_REF_SPLICE	YES	12	446	0.14	0	0.0099	0.0099	TLN2->chr15:62682725-63136830:+,talin_2,ANXA2->annexin_A2,chr15:60639333-60695082:-	HS229T_FIBROBLAST	0	0.14	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000131
HUPT4_PANCREAS	MT-TA--MT-TN	125	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3957	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT4_PANCREAS	1	1	1.3957	FALSE	369	2501	205	193	0	FALSE	ACH-000213
HUPT4_PANCREAS	TIMM23B--LINC00843	74	37	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8262	0.4131	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HUPT4_PANCREAS	1	1	1.2393	TRUE	508	994	45	981	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-TA--MT-TC	73	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8151	0.0893	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUPT4_PANCREAS	1	1	0.9044	FALSE	462	80	0	856	0	FALSE	ACH-000213
HUPT4_PANCREAS	RP11-114H23.1--RP11-114H23.2	28	43	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	4	0	0.95	1	0.3126	0.4801	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HUPT4_PANCREAS	0.95	1	0.7927	FALSE	81	155	12	160	0	FALSE	ACH-000213
HUPT4_PANCREAS	TIMM23--RP11-464F9.1	34	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	425	2	0.09	0.95	0.3796	0.067	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HUPT4_PANCREAS	0.09	0.95	0.4466	TRUE	519	3926	326	965	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-TA--MT-TN	16	62	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1786	0.6923	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT4_PANCREAS	1	1	0.8709	FALSE	369	2501	205	193	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-TA--MT-TN	18	46	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.201	0.5136	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT4_PANCREAS	1	1	0.7146	FALSE	369	2501	205	193	0	FALSE	ACH-000213
HUPT4_PANCREAS	ZNF654--HMGB2	26	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2903	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HUPT4_PANCREAS	1	1	0.2903	TRUE	0	0	0	518	0	FALSE	ACH-000213
HUPT4_PANCREAS	C15orf57--CBX3	18	31	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	123	51	0.28	0.49	0.201	0.3461	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HUPT4_PANCREAS	0.28	0.49	0.5471	TRUE	267	562	48	632	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-ND6--MT-TE	23	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2568	0.0558	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUPT4_PANCREAS	1	1	0.3126	FALSE	499	1288	110	792	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-TA--MT-TN	12	36	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.134	0.402	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT4_PANCREAS	1	1	0.536	FALSE	369	2501	205	193	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-TA--MT-TN	7	35	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0782	0.3908	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT4_PANCREAS	1	1	0.469	FALSE	369	2501	205	193	0	FALSE	ACH-000213
HUPT4_PANCREAS	C15orf57--CBX3	9	25	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	120	51	0.22	0.4	0.1005	0.2791	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HUPT4_PANCREAS	0.22	0.4	0.3796	TRUE	267	562	48	632	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-ND6--MT-TE	11	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.1228	0.134	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUPT4_PANCREAS	0.92	1	0.2568	FALSE	499	1288	110	792	0	FALSE	ACH-000213
HUPT4_PANCREAS	RP11-96H19.1--RP11-446N19.1	9	20	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	1	0.88	0.97	0.1005	0.2233	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUPT4_PANCREAS	0.88	0.97	0.3238	FALSE	467	2173	244	435	0	FALSE	ACH-000213
HUPT4_PANCREAS	RP11-96H19.1--RP11-446N19.1	10	15	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	11	1	0.69	0.96	0.1117	0.1675	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUPT4_PANCREAS	0.69	0.96	0.2792	FALSE	515	4851	409	746	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-TA--MT-TC	11	10	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1228	0.1117	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUPT4_PANCREAS	1	1	0.2345	FALSE	462	80	0	856	0	FALSE	ACH-000213
HUPT4_PANCREAS	RP11-114H23.1--RP11-114H23.2	3	38	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.0335	0.4243	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HUPT4_PANCREAS	0.91	1	0.4578	FALSE	81	155	12	160	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-TA--MT-TN	12	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.134	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT4_PANCREAS	1	1	0.134	FALSE	369	2501	205	193	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-TA--MT-TN	7	17	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0782	0.1898	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT4_PANCREAS	1	1	0.268	FALSE	369	2501	205	193	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-TA--MT-TC	8	12	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0893	0.134	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUPT4_PANCREAS	1	1	0.2233	FALSE	462	80	0	856	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-ND6--MT-TE	6	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0.1563	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUPT4_PANCREAS	1	1	0.2233	FALSE	499	1288	110	792	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-ND6--MT-TE	8	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0893	0.0558	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUPT4_PANCREAS	1	1	0.1451	FALSE	499	1288	110	792	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-ND3--MT-ATP8	9	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1005	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT4_PANCREAS	1	1	0.1005	FALSE	351	233	23	137	0	FALSE	ACH-000213
HUPT4_PANCREAS	RP11-96H19.1--RP11-446N19.1	4	20	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	11	0	0.69	1	0.0447	0.2233	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUPT4_PANCREAS	0.69	1	0.268	FALSE	407	2205	196	549	0	FALSE	ACH-000213
HUPT4_PANCREAS	SLC1A5--MT-ND4L	7	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	831	0	0.01	1	0.0782	0.0223	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT4_PANCREAS	0.01	1	0.1005	FALSE	0	0	0	189	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-ND5--MT-ND6	6	5	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0.0558	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HUPT4_PANCREAS	1	1	0.1228	FALSE	26	124	4	93	0	FALSE	ACH-000213
HUPT4_PANCREAS	NRIP1--AF127936.7	7	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.53	1	0.0782	0.0112	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HUPT4_PANCREAS	0.53	1	0.0894	FALSE	292	1546	117	613	0	FALSE	ACH-000213
HUPT4_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	25	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	4	0	0.87	1	0.0112	0.2791	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUPT4_PANCREAS	0.87	1	0.2903	FALSE	192	492	57	212	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-ND5--MT-ND6	6	4	MT-ND5	2769	chrM:14105:+	MT-ND6	5868	chrM:14618:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0.0447	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HUPT4_PANCREAS	1	1	0.1117	FALSE	26	124	4	93	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-TA--MT-TC	4	12	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0.134	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUPT4_PANCREAS	1	1	0.1787	FALSE	462	80	0	856	0	FALSE	ACH-000213
HUPT4_PANCREAS	NRIP1--AF127936.7	5	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	29	0	0.29	1	0.0558	0.0782	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HUPT4_PANCREAS	0.29	1	0.134	FALSE	164	806	69	479	0	FALSE	ACH-000213
HUPT4_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	23	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	11	0	0.69	1	0.0112	0.2568	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUPT4_PANCREAS	0.69	1	0.268	FALSE	275	511	55	178	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-ND5--MT-ND6	6	2	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	4718	1	0	0.067	0.0223	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HUPT4_PANCREAS	0	1	0.0893	FALSE	26	124	4	93	0	FALSE	ACH-000213
HUPT4_PANCREAS	RPS6--B2M	6	2	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	9736	0	0	1	0.067	0.0223	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	HUPT4_PANCREAS	0	1	0.0893	FALSE	0	0	0	28	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-TA--MT-TC	3	12	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0.134	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUPT4_PANCREAS	1	1	0.1675	FALSE	462	80	0	856	0	FALSE	ACH-000213
HUPT4_PANCREAS	RP11-123O10.4--GRIP1	6	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.067	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HUPT4_PANCREAS	1	1	0.067	FALSE	416	2512	207	587	0	FALSE	ACH-000213
HUPT4_PANCREAS	UBB--MTND2P28	6	0	UBB	2221	chr17:16285332:+	MTND2P28	5962	chr1:565033:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	UBB->chr17:16284112-16286059:+,ubiquitin_B,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HUPT4_PANCREAS	1	1	0.067	TRUE	0	0	0	2	0	TRUE	ACH-000213
HUPT4_PANCREAS	ITGB4--MT-ND4L	5	2	ITGB4	15946	chr17:73738716:+	MT-ND4L	31012	chrM:10471:+	INCL_NON_REF_SPLICE	YES	987	0	0.01	1	0.0558	0.0223	ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT4_PANCREAS	0.01	1	0.0781	FALSE	0	0	0	2	0	FALSE	ACH-000213
HUPT4_PANCREAS	RP11-114H23.1--RP11-114H23.2	1	18	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	4	7	0.83	0.73	0.0112	0.201	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HUPT4_PANCREAS	0.73	0.83	0.2122	FALSE	81	155	12	160	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-TA--MT-TN	5	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT4_PANCREAS	1	1	0.0558	FALSE	369	2501	205	193	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-TA--MT-TN	5	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT4_PANCREAS	1	1	0.0558	FALSE	369	2501	205	193	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-TA--MT-TC	3	7	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0.0782	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUPT4_PANCREAS	1	1	0.1117	FALSE	462	80	0	856	0	FALSE	ACH-000213
HUPT4_PANCREAS	IRAK2--MT-ND4L	4	0	IRAK2	4568	chr3:10251326:+	MT-ND4L	18566	chrM:10470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	IRAK2->Oncogene{Bushman},chr3:10206549-10285427:+,interleukin_1_receptor_associated_kinase_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT4_PANCREAS	1	1	0.0447	FALSE	0	0	0	1	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUPT4_PANCREAS	1	1	0.0447	FALSE	462	80	0	856	0	FALSE	ACH-000213
HUPT4_PANCREAS	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HUPT4_PANCREAS	1	1	0.0447	TRUE	0	0	0	434	0	FALSE	ACH-000213
HUPT4_PANCREAS	NRIP1--AF127936.7	3	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	27	0	0.21	1	0.0335	0.0447	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HUPT4_PANCREAS	0.21	1	0.0782	FALSE	125	705	46	456	0	FALSE	ACH-000213
HUPT4_PANCREAS	ZNF654--HMGB2	4	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HUPT4_PANCREAS	1	1	0.0447	TRUE	0	0	0	518	0	FALSE	ACH-000213
HUPT4_PANCREAS	NR2F2--B2M	3	1	NR2F2	1415	chr15:96869581:+	B2M	15679	chr15:45007621:+	ONLY_REF_SPLICE	YES	91	279	0.04	0.01	0.0335	0.0112	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},NR2F2->chr15:96869167-96883492:+,nuclear_receptor_subfamily_2_group_F_member_2,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	HUPT4_PANCREAS	0.01	0.04	0.0447	FALSE	0	0	0	1	0	FALSE	ACH-000213
HUPT4_PANCREAS	UBB--MTND2P28	3	1	UBB	2477	chr17:16285588:+	MTND2P28	5995	chr1:565066:+	INCL_NON_REF_SPLICE	YES	4447	0	0	1	0.0335	0.0112	UBB->chr17:16284112-16286059:+,ubiquitin_B,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HUPT4_PANCREAS	0	1	0.0447	FALSE	0	0	0	2	0	FALSE	ACH-000213
HUPT4_PANCREAS	ATR--U2SURP	3	0	ATR	3414	chr3:142284963:-	U2SURP	75627	chr3:142751626:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Vagina=1},ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	HUPT4_PANCREAS	1	1	0.0335	TRUE	0	10	0	10	7	TRUE	ACH-000213
HUPT4_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUPT4_PANCREAS	1	1	0.0335	FALSE	499	1288	110	792	0	FALSE	ACH-000213
HUPT4_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUPT4_PANCREAS	1	1	0.0335	FALSE	499	1288	110	792	0	FALSE	ACH-000213
HUPT4_PANCREAS	VDAC1--CTD-2410N18.5	2	1	VDAC1	1487	chr5:133340338:-	CTD-2410N18.5	16152	chr5:133509713:-	ONLY_REF_SPLICE	YES	187	6	0.02	0.33	0.0223	0.0112	VDAC1->chr5:133307606-133340824:-,voltage_dependent_anion_channel_1,CTD-2410N18.5->chr5:133502861-133561762:-	HUPT4_PANCREAS	0.02	0.33	0.0335	TRUE	0	0	0	6	0	FALSE	ACH-000213
HUPT4_PANCREAS	HRH1--ATG7	2	0	HRH1	2334	chr3:11196240:+	ATG7	35480	chr3:11399892:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NEIGHBORS[8752],HRH1->chr3:11178779-11305243:+,histamine_receptor_H1,ATG7->autophagy_related_7,chr3:11313995-11599139:+	HUPT4_PANCREAS	1	1	0.0223	FALSE	0	0	0	1	0	FALSE	ACH-000213
HUPT4_PANCREAS	PLSCR1--MBD2	2	0	PLSCR1	1398	chr3:146262254:-	MBD2	22263	chr18:51715381:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1,MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2	HUPT4_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000213
HUPT4_PANCREAS	RP11-1379J22.5--NGLY1	2	0	RP11-1379J22.5	1720	chr5:179085482:+	NGLY1	19654	chr3:25775473:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	RP11-1379J22.5->chr5:179084763-179091433:+,NGLY1->N-glycanase_1,chr3:25760435-25831530:-	HUPT4_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000213
HUPT4_PANCREAS	RP4-756H11.3--GET4	2	0	RP4-756H11.3	1089	chr7:66119613:+	GET4	14710	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	RP4-756H11.3->chr7:66119525-66134842:+,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	HUPT4_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000213
HUPT4_PANCREAS	SAMD12--MAL2	2	0	SAMD12	1192	chr8:119634043:-	MAL2	25144	chr8:120233827:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MAL2->chr8:120177273-120257913:+,mal,_T-cell_differentiation_protein_2_(gene/pseudogene)	HUPT4_PANCREAS	1	1	0.0223	TRUE	0	1	0	2	1	TRUE	ACH-000213
HUPT4_PANCREAS	SGK3--FNTA	2	0	SGK3	10974	chr8:67726163:+	FNTA	31243	chr8:42914235:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	SGK3->chr8:67624653-67774257:+,serum/glucocorticoid_regulated_kinase_family_member_3,FNTA->chr8:42889337-42940931:+,farnesyltransferase,_CAAX_box,_alpha	HUPT4_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000213
HUPT4_PANCREAS	TEAD1--PARVA	2	0	TEAD1	4496	chr11:12785981:+	PARVA	32787	chr11:12495292:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	HUPT4_PANCREAS	1	1	0.0223	TRUE	3	5	0	10	0	FALSE	ACH-000213
HUPT4_PANCREAS	TES--CAV1	2	0	TES	1242	chr7:115850788:+	CAV1	16985	chr7:116199000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	{Klijn_CCL:Lung=1,Head-Neck=1},TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	HUPT4_PANCREAS	1	1	0.0223	TRUE	1	1	1	3	0	TRUE	ACH-000213
HUPT4_PANCREAS	ATXN7--THOC7	1	2	ATXN7	5937	chr3:63898901:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	YES	14	42	0.18	0.07	0.0112	0.0223	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	HUPT4_PANCREAS	0.07	0.18	0.0335	TRUE	0	4	3	3	1	TRUE	ACH-000213
HUPT4_PANCREAS	ADAP1--SUN1	1	1	ADAP1	2012	chr7:994032:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	13	890	0.13	0	0.0112	0.0112	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	HUPT4_PANCREAS	0	0.13	0.0224	FALSE	0	0	0	3	0	FALSE	ACH-000213
HUPT4_PANCREAS	FTH1--ALDH1A3	1	1	FTH1	1259	chr11:61734874:-	ALDH1A3	15148	chr15:101432715:+	ONLY_REF_SPLICE	YES	9800	2012	0	0	0.0112	0.0112	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ALDH1A3->aldehyde_dehydrogenase_1_family_member_A3,chr15:101417919-101456831:+	HUPT4_PANCREAS	0	0	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000213
HUPT4_PANCREAS	LRRFIP2--GOLGA4	1	1	LRRFIP2	4142	chr3:37216030:-	GOLGA4	71790	chr3:37376544:+	ONLY_REF_SPLICE	YES	146	601	0.01	0	0.0112	0.0112	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Subcutaneous=1,Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:-:+:[59488],LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2,GOLGA4->chr3:37284668-37408242:+,golgin_A4	HUPT4_PANCREAS	0	0.01	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000213
HUPT4_PANCREAS	MAPK10--PTPN13	1	1	MAPK10	1222	chr4:87515063:-	PTPN13	42871	chr4:87556405:+	ONLY_REF_SPLICE	YES	59	18	0.03	0.1	0.0112	0.0112	GTEx_v2:{count=2;pct=0.02%;dist=Prostate=1,Thyroid=1},LOCAL_INVERSION:-:+:[184],MAPK10->Oncogene{Bushman},chr4:86936276-87515284:-,mitogen-activated_protein_kinase_10,PTPN13->Oncogene{Bushman},chr4:87515468-87736324:+,protein_tyrosine_phosphatase,_non-receptor_type_13	HUPT4_PANCREAS	0.03	0.1	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000213
HUPT4_PANCREAS	SHFM1--SCG5	1	1	SHFM1	1204	chr7:96339000:-	SCG5	33439	chr15:32988715:+	ONLY_REF_SPLICE	YES	1139	43	0	0.04	0.0112	0.0112	SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,SCG5->chr15:32933877-32989299:+,secretogranin_V	HUPT4_PANCREAS	0	0.04	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000213
HUPT4_PANCREAS	SIRT1--HERC4	1	1	SIRT1	5243	chr10:69651312:+	HERC4	46410	chr10:69716733:-	ONLY_REF_SPLICE	YES	55	134	0.04	0.01	0.0112	0.0112	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_INVERSION:+:-:[3518],SIRT1->Oncogene{Bushman},chr10:69644427-69678147:+,sirtuin_1,HERC4->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_4,chr10:69681665-69835105:-	HUPT4_PANCREAS	0.01	0.04	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000213
HUPT4_PANCREAS	USP10--CRKL	1	1	USP10	1134	chr16:84733717:+	CRKL	25229	chr22:21288067:+	ONLY_REF_SPLICE	YES	41	107	0.05	0.02	0.0112	0.0112	USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,CRKL->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:21271714-21308037:+,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog-like	HUPT4_PANCREAS	0.02	0.05	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000213
PLCPRF5_LIVER	MT-ND4--MT-ND1	710	4	MT-ND4	1988	chrM:11747:+	MT-ND1	5746	chrM:3674:+	INCL_NON_REF_SPLICE	YES	16133	13108	0.04	0.05	8.0977	0.0456	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PLCPRF5_LIVER	0.04	0.05	8.1433	FALSE	51	52	3	16	0	FALSE	ACH-001318
PLCPRF5_LIVER	TIMM23B--LINC00843	87	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9923	0.2395	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PLCPRF5_LIVER	1	1	1.2318	TRUE	508	994	45	981	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-TA--MT-TC	69	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.787	0.1141	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PLCPRF5_LIVER	1	1	0.9011	FALSE	462	80	0	856	0	FALSE	ACH-001318
PLCPRF5_LIVER	TIMM23--RP11-464F9.1	54	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	211	2	0.21	0.97	0.6159	0.0228	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PLCPRF5_LIVER	0.21	0.97	0.6387	TRUE	519	3926	326	965	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND6--MT-TE	36	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4106	0.0684	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PLCPRF5_LIVER	1	1	0.479	FALSE	499	1288	110	792	0	FALSE	ACH-001318
PLCPRF5_LIVER	NTS--WTAP	33	1	NTS	4880	chr12:86276095:+	WTAP	9084	chr6:160147145:+	INCL_NON_REF_SPLICE	NO	7220	10	0	0.77	0.3764	0.0114	NTS->chr12:86268073-86276770:+,neurotensin,WTAP->Wilms_tumor_1_associated_protein,chr6:160146617-160177351:+	PLCPRF5_LIVER	0	0.77	0.3878	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ND1	30	5	MT-ND4	2043	chrM:11802:+	MT-ND1	5745	chrM:3673:+	INCL_NON_REF_SPLICE	NO	14568	13111	0	0	0.3422	0.057	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PLCPRF5_LIVER	0	0	0.3992	FALSE	51	52	3	16	0	FALSE	ACH-001318
PLCPRF5_LIVER	PLXDC1--TAF13	25	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2851	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	PLCPRF5_LIVER	1	1	0.2851	TRUE	7	10	0	216	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND6--MT-TE	19	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.2167	0.1825	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PLCPRF5_LIVER	0.95	1	0.3992	FALSE	499	1288	110	792	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	20	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	12739	6	0	0.79	0.2281	0.0342	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	0.79	0.2623	FALSE	230	193	14	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ND1	20	0	MT-ND4	1213	chrM:10972:+	MT-ND1	5394	chrM:3322:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2281	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PLCPRF5_LIVER	1	1	0.2281	FALSE	51	50	3	16	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ND1	19	1	MT-ND4	1711	chrM:11470:+	MT-ND1	5676	chrM:3604:+	INCL_NON_REF_SPLICE	YES	16465	11829	0	0	0.2167	0.0114	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PLCPRF5_LIVER	0	0	0.2281	FALSE	51	52	3	16	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-TA--MT-TC	11	10	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1255	0.1141	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PLCPRF5_LIVER	1	1	0.2396	FALSE	462	80	0	856	0	FALSE	ACH-001318
PLCPRF5_LIVER	HNF1A-AS1--POP5	11	7	HNF1A-AS1	1322	chr12:121418447:-	POP5	11802	chr12:121017726:-	ONLY_REF_SPLICE	YES	7	192	0.72	0.09	0.1255	0.0798	HNF1A-AS1->HNF1A_antisense_RNA_1,chr12:121406416-121418768:-,POP5->POP5_homolog,_ribonuclease_P/MRP_subunit,chr12:121016567-121019201:-	PLCPRF5_LIVER	0.09	0.72	0.2053	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	MT-ND6--MT-TE	7	20	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0798	0.2281	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PLCPRF5_LIVER	1	1	0.3079	FALSE	499	1288	110	792	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-TA--MT-TC	12	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1369	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PLCPRF5_LIVER	1	1	0.1369	FALSE	462	80	0	856	0	FALSE	ACH-001318
PLCPRF5_LIVER	RPS6KA3--MAP7D2	12	0	RPS6KA3	1842	chrX:20284682:-	MAP7D2	35855	chrX:20082923:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1369	0	NEIGHBORS[32994],RPS6KA3->chrX:20168029-20285523:-,ribosomal_protein_S6_kinase_A3,MAP7D2->MAP7_domain_containing_2,chrX:20024831-20135035:-	PLCPRF5_LIVER	1	1	0.1369	FALSE	0	1	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	HNF1A-AS1--POP5	9	11	HNF1A-AS1	5762	chr12:121408101:-	POP5	11802	chr12:121017726:-	INCL_NON_REF_SPLICE	YES	2	192	0.91	0.09	0.1026	0.1255	HNF1A-AS1->HNF1A_antisense_RNA_1,chr12:121406416-121418768:-,POP5->POP5_homolog,_ribonuclease_P/MRP_subunit,chr12:121016567-121019201:-	PLCPRF5_LIVER	0.09	0.91	0.2281	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	11	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	12739	6	0	0.7	0.1255	0.0342	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	0.7	0.1597	FALSE	230	193	14	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ND1	11	3	MT-ND4	1843	chrM:11602:+	MT-ND1	5394	chrM:3322:+	INCL_NON_REF_SPLICE	NO	16485	0	0	1	0.1255	0.0342	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PLCPRF5_LIVER	0	1	0.1597	FALSE	51	52	3	16	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND6--MT-TE	9	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1026	0.0684	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PLCPRF5_LIVER	1	1	0.171	FALSE	499	1288	110	792	0	FALSE	ACH-001318
PLCPRF5_LIVER	RP11-6N13.1--CTD-2374C24.1	10	1	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1141	0.0114	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	PLCPRF5_LIVER	1	1	0.1255	TRUE	5	4	0	46	0	FALSE	ACH-001318
PLCPRF5_LIVER	ATF1--LINC00592	8	3	ATF1	4114	chr12:51174021:+	LINC00592	18513	chr12:52617230:+	ONLY_REF_SPLICE	YES	60	0	0.15	1	0.0912	0.0342	ATF1->Oncogene{Bushman},activating_transcription_factor_1,chr12:51157493-51214905:+,LINC00592->chr12:52604714-52617588:+,long_intergenic_non-protein_coding_RNA_592	PLCPRF5_LIVER	0.15	1	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	SLC1A5--MT-ND4L	8	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	481	0	0.02	1	0.0912	0.0114	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PLCPRF5_LIVER	0.02	1	0.1026	FALSE	0	0	0	189	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND6--MT-TE	4	16	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0456	0.1825	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PLCPRF5_LIVER	0.95	1	0.2281	FALSE	499	1288	110	792	0	FALSE	ACH-001318
PLCPRF5_LIVER	C1orf85--MT-ND4L	7	3	C1orf85	2595	chr1:156263869:-	MT-ND4L	9449	chrM:10471:+	INCL_NON_REF_SPLICE	YES	499	0	0.02	1	0.0798	0.0342	C1orf85->chr1:156259880-156265463:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PLCPRF5_LIVER	0.02	1	0.114	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	6	5	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19708	60	0	0.15	0.0684	0.057	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	0.15	0.1254	FALSE	231	217	16	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	AGO2--TRAPPC9	7	0	AGO2	1135	chr8:141645584:-	TRAPPC9	53615	chr8:141034176:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0798	0	NEIGHBORS[72586],AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	PLCPRF5_LIVER	1	1	0.0798	FALSE	0	2	0	3	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	6	4	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	16738	2	0	0.83	0.0684	0.0456	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	0.83	0.114	FALSE	231	205	14	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND6--MT-TE	4	12	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0.1369	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PLCPRF5_LIVER	1	1	0.1825	FALSE	499	1288	110	792	0	FALSE	ACH-001318
PLCPRF5_LIVER	PTP4A1--EEF1A1	6	4	PTP4A1	4040	chr6:64282624:+	EEF1A1	18831	chr6:74229779:-	ONLY_REF_SPLICE	YES	1402	157	0.01	0.06	0.0684	0.0456	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=2},PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	PLCPRF5_LIVER	0.01	0.06	0.114	TRUE	0	1	0	2	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	6	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12746	6	0	0.6	0.0684	0.0342	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	0.6	0.1026	FALSE	230	198	14	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	6	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	15190	6	0	0.6	0.0684	0.0342	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	0.6	0.1026	FALSE	231	205	14	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	CPS1--AC007970.1	6	2	CPS1	9096	chr2:211447433:+	AC007970.1	58471	chr2:211333229:+	ONLY_REF_SPLICE	YES	1374	0	0.01	1	0.0684	0.0228	LOCAL_REARRANGEMENT:+:[8436],CPS1->carbamoyl-phosphate_synthase_1,chr2:211342406-211543831:+,AC007970.1->chr2:211189483-211333970:+	PLCPRF5_LIVER	0.01	1	0.0912	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	5	6	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2783	60	0	0.15	0.057	0.0684	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	0.15	0.1254	FALSE	216	209	16	281	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	6	1	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	7074	0	0	1	0.0684	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	1	0.0798	FALSE	230	193	14	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	5	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16620	60	0	0.14	0.057	0.057	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	0.14	0.114	FALSE	231	217	16	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-TC--MT-TY	6	1	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0684	0.0114	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	PLCPRF5_LIVER	1	1	0.0798	FALSE	51	280	19	36	0	FALSE	ACH-001318
PLCPRF5_LIVER	RP11-96H19.1--RP11-446N19.1	6	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.88	0.78	0.0684	0.0114	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PLCPRF5_LIVER	0.78	0.88	0.0798	FALSE	515	4851	409	746	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	4	7	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	17130	0	0	1	0.0456	0.0798	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	1	0.1254	FALSE	231	217	16	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND6--MT-TE	3	11	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.1255	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PLCPRF5_LIVER	1	1	0.1597	FALSE	499	1288	110	792	0	FALSE	ACH-001318
PLCPRF5_LIVER	POLR2J3--IGF2BP2	5	3	POLR2J3	5847	chr7:102207444:-	IGF2BP2	23165	chr3:185416135:-	ONLY_REF_SPLICE	YES	124	142	0.06	0.05	0.057	0.0342	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2	PLCPRF5_LIVER	0.05	0.06	0.0912	TRUE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	4	6	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15538	60	0	0.14	0.0456	0.0684	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	0.14	0.114	FALSE	231	217	16	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	HNF1A-AS1--POP5	3	9	HNF1A-AS1	2352	chr12:121417417:-	POP5	11802	chr12:121017726:-	ONLY_REF_SPLICE	YES	7	192	0.63	0.06	0.0342	0.1026	HNF1A-AS1->HNF1A_antisense_RNA_1,chr12:121406416-121418768:-,POP5->POP5_homolog,_ribonuclease_P/MRP_subunit,chr12:121016567-121019201:-	PLCPRF5_LIVER	0.06	0.63	0.1368	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	HNF1A-AS1--POP5	3	9	HNF1A-AS1	4589	chr12:121412288:-	POP5	11802	chr12:121017726:-	ONLY_REF_SPLICE	YES	5	192	0.71	0.06	0.0342	0.1026	HNF1A-AS1->HNF1A_antisense_RNA_1,chr12:121406416-121418768:-,POP5->POP5_homolog,_ribonuclease_P/MRP_subunit,chr12:121016567-121019201:-	PLCPRF5_LIVER	0.06	0.71	0.1368	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	4	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17771	0	0	1	0.0456	0.057	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	1	0.1026	FALSE	231	217	16	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	4	5	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17126	6	0	0.6	0.0456	0.057	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	0.6	0.1026	FALSE	231	217	16	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	ASS1--MT-CO3	5	0	ASS1	7359	chr9:133339534:+	MT-CO3	21796	chrM:9549:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0	ASS1->argininosuccinate_synthase_1,chr9:133320316-133376661:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PLCPRF5_LIVER	1	1	0.057	FALSE	0	0	0	12	0	FALSE	ACH-001318
PLCPRF5_LIVER	DDA1--MYO9B	5	0	DDA1	1140	chr19:17420466:+	MYO9B	36789	chr19:17305365:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0	LOCAL_REARRANGEMENT:+:[94981],DDA1->DET1_and_DDB1_associated_1,chr19:17420327-17434110:+,MYO9B->chr19:17186591-17325346:+,myosin_IXB	PLCPRF5_LIVER	1	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	KHDRBS1--HLA-C	5	0	KHDRBS1	4802	chr1:32498799:+	HLA-C	19309	chr6:31237305:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0	KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+,HLA-C->chr6:31236526-31239907:-,major_histocompatibility_complex,_class_I,_C	PLCPRF5_LIVER	1	1	0.057	FALSE	0	0	0	6	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	3	8	MT-ND4	2255	chrM:12014:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	2293	0	0	1	0.0342	0.0912	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	1	0.1254	FALSE	216	209	16	281	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	3	8	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	15214	0	0	1	0.0342	0.0912	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	1	0.1254	FALSE	231	215	16	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	3	7	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	17253	0	0	1	0.0342	0.0798	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	1	0.114	FALSE	231	217	16	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	3	7	MT-ND4	1901	chrM:11660:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	17152	0	0	1	0.0342	0.0798	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	1	0.114	FALSE	231	217	16	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	3	7	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	16514	0	0	1	0.0342	0.0798	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	1	0.114	FALSE	231	217	16	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	3	7	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	16888	0	0	1	0.0342	0.0798	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	1	0.114	FALSE	231	217	16	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	3	7	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	15922	0	0	1	0.0342	0.0798	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	1	0.114	FALSE	231	217	16	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	CALM3--MT-ND4L	4	2	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	666	0	0.01	1	0.0456	0.0228	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PLCPRF5_LIVER	0.01	1	0.0684	FALSE	1	1	0	107	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	4	2	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	13818	1828	0	0	0.0456	0.0228	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	0	0.0684	FALSE	231	204	14	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	3	5	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	17720	0	0	1	0.0342	0.057	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	1	0.0912	FALSE	231	217	16	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND6--MT-TE	4	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0.0114	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PLCPRF5_LIVER	1	1	0.057	FALSE	499	1288	110	792	0	FALSE	ACH-001318
PLCPRF5_LIVER	RAD18--SRGAP3	4	1	RAD18	4654	chr3:8988904:-	SRGAP3	32198	chr3:9166601:-	ONLY_REF_SPLICE	YES	36	1	0.12	0.83	0.0456	0.0114	LOCAL_REARRANGEMENT:-:[16818],RAD18->RAD18,_E3_ubiquitin_protein_ligase,chr3:8817088-9005457:-,SRGAP3->Oncogene{Bushman},SLIT-ROBO_Rho_GTPase_activating_protein_3,chr3:9022275-9404737:-	PLCPRF5_LIVER	0.12	0.83	0.057	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	ARHGEF7--ING1	4	0	ARHGEF7	4362	chr13:111806338:+	ING1	46027	chr13:111371576:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0456	0	ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	PLCPRF5_LIVER	1	1	0.0456	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	HSPBP1--GRK5	4	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	PLCPRF5_LIVER	1	1	0.0456	TRUE	1	39	0	134	39	FALSE	ACH-001318
PLCPRF5_LIVER	MT-TC--MT-TY	4	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	PLCPRF5_LIVER	1	1	0.0456	FALSE	51	280	19	36	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	3	3	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	16937	796	0	0.01	0.0342	0.0342	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	0.01	0.0684	FALSE	231	217	16	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	3	3	MT-ND4	1521	chrM:11280:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	19326	562	0	0.01	0.0342	0.0342	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	0.01	0.0684	FALSE	231	217	16	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	3	2	MT-ND4	1301	chrM:11060:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	16763	919	0	0.01	0.0342	0.0228	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	0.01	0.057	FALSE	231	205	14	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	3	2	MT-ND4	1436	chrM:11195:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	18252	746	0	0.01	0.0342	0.0228	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	0.01	0.057	FALSE	231	217	16	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ATP8	3	1	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	7497	0	0	1	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PLCPRF5_LIVER	0	1	0.0456	FALSE	230	193	14	283	0	FALSE	ACH-001318
PLCPRF5_LIVER	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0342	0.0114	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PLCPRF5_LIVER	0.5	1	0.0456	FALSE	292	1546	117	613	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ND1	3	0	MT-ND4	1243	chrM:11002:+	MT-ND1	5567	chrM:3495:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PLCPRF5_LIVER	1	1	0.0342	FALSE	51	51	3	16	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ND1	3	0	MT-ND4	1362	chrM:11121:+	MT-ND1	5597	chrM:3525:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PLCPRF5_LIVER	1	1	0.0342	FALSE	51	52	3	16	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND4--MT-ND1	3	0	MT-ND4	1314	chrM:11073:+	MT-ND1	5597	chrM:3525:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PLCPRF5_LIVER	1	1	0.0342	FALSE	51	51	3	16	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND6--MT-TE	3	0	MT-ND6	1046	chrM:14628:-	MT-TE	4575	chrM:14693:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PLCPRF5_LIVER	1	1	0.0342	FALSE	499	1288	110	792	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PLCPRF5_LIVER	1	1	0.0342	FALSE	499	1288	110	792	0	FALSE	ACH-001318
PLCPRF5_LIVER	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PLCPRF5_LIVER	1	1	0.0342	FALSE	499	1288	110	792	0	FALSE	ACH-001318
PLCPRF5_LIVER	MYL9--MT-CO3	3	0	MYL9	4581	chr20:35177727:+	MT-CO3	8123	chrM:9247:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PLCPRF5_LIVER	1	1	0.0342	FALSE	29	0	0	10	0	FALSE	ACH-001318
PLCPRF5_LIVER	POLR2J3--IGF2BP2	2	4	POLR2J3	5847	chr7:102207444:-	IGF2BP2	19938	chr3:185541001:-	ONLY_REF_SPLICE	YES	124	156	0.05	0.04	0.0228	0.0456	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2	PLCPRF5_LIVER	0.04	0.05	0.0684	TRUE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	TGIF1--MYL12B	3	0	TGIF1	8043	chr18:3450503:+	MYL12B	20407	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Lung=1},TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	PLCPRF5_LIVER	1	1	0.0342	TRUE	0	2	0	6	0	TRUE	ACH-001318
PLCPRF5_LIVER	CPS1--AC007970.1	2	2	CPS1	21415	chr2:211469970:+	AC007970.1	57063	chr2:211325199:+	ONLY_REF_SPLICE	YES	1413	0	0	1	0.0228	0.0228	LOCAL_REARRANGEMENT:+:[8436],CPS1->carbamoyl-phosphate_synthase_1,chr2:211342406-211543831:+,AC007970.1->chr2:211189483-211333970:+	PLCPRF5_LIVER	0	1	0.0456	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	PHF3--PTP4A1	2	2	PHF3	3273	chr6:64356700:+	PTP4A1	35093	chr6:64286341:+	ONLY_REF_SPLICE	YES	69	1500	0.05	0	0.0228	0.0228	LOCAL_REARRANGEMENT:+:[52233],PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+,PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1	PLCPRF5_LIVER	0	0.05	0.0456	FALSE	0	0	0	4	0	FALSE	ACH-001318
PLCPRF5_LIVER	CPS1--AC007970.1	2	1	CPS1	3641	chr2:211421583:+	AC007970.1	58471	chr2:211333229:+	ONLY_REF_SPLICE	YES	976	0	0	1	0.0228	0.0114	LOCAL_REARRANGEMENT:+:[8436],CPS1->carbamoyl-phosphate_synthase_1,chr2:211342406-211543831:+,AC007970.1->chr2:211189483-211333970:+	PLCPRF5_LIVER	0	1	0.0342	FALSE	0	1	0	1	1	FALSE	ACH-001318
PLCPRF5_LIVER	MOSPD2--PIR	2	1	MOSPD2	1318	chrX:14891880:+	PIR	32654	chrX:15425672:-	ONLY_REF_SPLICE	YES	28	362	0.1	0.01	0.0228	0.0114	MOSPD2->chrX:14891563-14940449:+,motile_sperm_domain_containing_2,PIR->chrX:15402921-15511687:-,pirin	PLCPRF5_LIVER	0.01	0.1	0.0342	FALSE	1	9	0	3	1	FALSE	ACH-001318
PLCPRF5_LIVER	TMED10--ELMSAN1	2	1	TMED10	1277	chr14:75643058:-	ELMSAN1	18516	chr14:74206958:-	ONLY_REF_SPLICE	YES	868	12	0	0.2	0.0228	0.0114	TMED10->chr14:75598173-75643334:-,transmembrane_p24_trafficking_protein_10,ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-	PLCPRF5_LIVER	0	0.2	0.0342	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	YWHAE--CRK	2	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1078	80	0	0.04	0.0228	0.0114	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	PLCPRF5_LIVER	0	0.04	0.0342	FALSE	6	50	7	115	0	FALSE	ACH-001318
PLCPRF5_LIVER	ATF2--MTX2	2	0	ATF2	6675	chr2:175994866:-	MTX2	26795	chr2:177161588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-,MTX2->chr2:177134123-177202753:+,metaxin_2	PLCPRF5_LIVER	1	1	0.0228	TRUE	0	1	0	2	0	TRUE	ACH-001318
PLCPRF5_LIVER	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	PLCPRF5_LIVER	1	1	0.0228	TRUE	0	6	0	16	3	TRUE	ACH-001318
PLCPRF5_LIVER	FOSB--GNAS	2	0	FOSB	1718	chr19:45971970:+	GNAS	26859	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx&tcga_normals:4/3694=0.11%,FOSB->FosB_proto-oncogene,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr19:45971253-45978437:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	PLCPRF5_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	GSE1--AC013394.2	2	0	GSE1	2365	chr16:85647004:+	AC013394.2	29259	chr15:93428745:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,AC013394.2->chr15:93425937-93441975:+	PLCPRF5_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	IDH3G--LINC00894	2	0	IDH3G	4466	chrX:153055650:-	LINC00894	19589	chrX:149115392:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	IDH3G->chrX:153051221-153059978:-,isocitrate_dehydrogenase_3_(NAD(+))_gamma,LINC00894->chrX:149106846-149392815:+,long_intergenic_non-protein_coding_RNA_894	PLCPRF5_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	NRIP1--AF127936.7	1	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	23	0	0.18	1	0.0114	0.0456	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PLCPRF5_LIVER	0.18	1	0.057	FALSE	125	705	46	456	0	FALSE	ACH-001318
PLCPRF5_LIVER	RP11-268G12.1--RPS6KA3	2	0	RP11-268G12.1	1247	chrX:27416868:-	RPS6KA3	17882	chrX:20252932:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	RP11-268G12.1->chrX:27193037-27417114:-,RPS6KA3->chrX:20168029-20285523:-,ribosomal_protein_S6_kinase_A3	PLCPRF5_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	RP11-6N13.1--CTD-2374C24.1	2	0	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	PLCPRF5_LIVER	1	1	0.0228	TRUE	5	12	0	42	0	FALSE	ACH-001318
PLCPRF5_LIVER	TRAPPC9--MAEA	2	0	TRAPPC9	55504	chr8:140898123:-	MAEA	82713	chr4:1326545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	PLCPRF5_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	YWHAZ--KLF10	2	0	YWHAZ	2460	chr8:101964157:-	KLF10	23145	chr8:103664625:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_FI:{Skin=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Adipose_-_Visceral_(Omentum)=1},YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta,KLF10->Kruppel-like_factor_10,chr8:103661007-103668130:-	PLCPRF5_LIVER	1	1	0.0228	TRUE	2	0	0	3	0	FALSE	ACH-001318
PLCPRF5_LIVER	CPS1--AC007970.1	1	3	CPS1	26121	chr2:211481265:+	AC007970.1	58471	chr2:211333229:+	ONLY_REF_SPLICE	YES	1426	0	0	1	0.0114	0.0342	LOCAL_REARRANGEMENT:+:[8436],CPS1->carbamoyl-phosphate_synthase_1,chr2:211342406-211543831:+,AC007970.1->chr2:211189483-211333970:+	PLCPRF5_LIVER	0	1	0.0456	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	CPS1--AC007970.1	1	3	CPS1	36354	chr2:211521356:+	AC007970.1	53409	chr2:211292473:+	ONLY_REF_SPLICE	NO	1359	0	0	1	0.0114	0.0342	LOCAL_REARRANGEMENT:+:[8436],CPS1->carbamoyl-phosphate_synthase_1,chr2:211342406-211543831:+,AC007970.1->chr2:211189483-211333970:+	PLCPRF5_LIVER	0	1	0.0456	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	DNAJC24--IMMP1L	1	2	DNAJC24	2020	chr11:31392406:+	IMMP1L	26312	chr11:31491344:-	ONLY_REF_SPLICE	YES	32	15	0.09	0.17	0.0114	0.0228	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Nerve_-_Tibial=2,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Pancreas=1},LOCAL_INVERSION:+:-:[552],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	PLCPRF5_LIVER	0.09	0.17	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	GPR126--VTA1	1	2	GPR126	2987	chr6:142630781:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	YES	254	161	0.01	0.02	0.0114	0.0228	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	PLCPRF5_LIVER	0.01	0.02	0.0342	FALSE	0	2	0	15	1	FALSE	ACH-001318
PLCPRF5_LIVER	MEF2A--LRRC28	1	2	MEF2A	2764	chr15:100106309:+	LRRC28	31038	chr15:99827462:+	ONLY_REF_SPLICE	YES	24	56	0.11	0.05	0.0114	0.0228	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=3;pct=0.03%;dist=Ovary=1,Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1},LOCAL_REARRANGEMENT:+:[86436],MEF2A->chr15:100017370-100256671:+,myocyte_enhancer_factor_2A,LRRC28->chr15:99791567-99930934:+,leucine_rich_repeat_containing_28	PLCPRF5_LIVER	0.05	0.11	0.0342	TRUE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	ANKRD44--PGAP1	1	1	ANKRD44	5590	chr2:198011751:-	PGAP1	47210	chr2:197784874:-	ONLY_REF_SPLICE	YES	7	4	0.22	0.33	0.0114	0.0114	NEIGHBORS[39221],ANKRD44->Oncogene{Bushman},ankyrin_repeat_domain_44,chr2:197831741-198175897:-,PGAP1->chr2:197697728-197792520:-,post-GPI_attachment_to_proteins_1	PLCPRF5_LIVER	0.22	0.33	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	C2orf48--ODC1	1	1	C2orf48	1994	chr2:10282502:+	ODC1	9441	chr2:10585390:-	ONLY_REF_SPLICE	YES	0	183	1	0.01	0.0114	0.0114	C2orf48->chr2:10281509-10351851:+,chromosome_2_open_reading_frame_48,ODC1->chr2:10580094-10588630:-,ornithine_decarboxylase_1	PLCPRF5_LIVER	0.01	1	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	C7orf50--FAM20C	1	1	C7orf50	3078	chr7:1166893:-	FAM20C	23334	chr7:286381:+	ONLY_REF_SPLICE	YES	213	57	0.01	0.03	0.0114	0.0114	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C	PLCPRF5_LIVER	0.01	0.03	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	CCL14--TAF15	1	1	CCL14	1645	chr17:34328456:-	TAF15	15171	chr17:34144720:+	ONLY_REF_SPLICE	YES	243	85	0.01	0.02	0.0114	0.0114	CCL14->C-C_motif_chemokine_ligand_14,chr17:34310327-34329100:-,TAF15->Oncogene{Bushman},TATA-box_binding_protein_associated_factor_15,chr17:34136459-34191619:+	PLCPRF5_LIVER	0.01	0.02	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	DNAJC2--RELN	1	1	DNAJC2	2506	chr7:102982211:-	RELN	90965	chr7:103113355:-	ONLY_REF_SPLICE	YES	156	305	0.01	0.01	0.0114	0.0114	DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-,RELN->chr7:103112231-103629963:-,reelin	PLCPRF5_LIVER	0.01	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	DNAJC2--RELN	1	1	DNAJC2	8288	chr7:102966990:-	RELN	90965	chr7:103113355:-	ONLY_REF_SPLICE	YES	118	305	0.02	0.01	0.0114	0.0114	DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-,RELN->chr7:103112231-103629963:-,reelin	PLCPRF5_LIVER	0.01	0.02	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	DSCR3--TTC3	1	1	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	71	79	0.03	0.02	0.0114	0.0114	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	PLCPRF5_LIVER	0.02	0.03	0.0228	TRUE	0	9	0	44	1	FALSE	ACH-001318
PLCPRF5_LIVER	FNDC3B--CLDN1	1	1	FNDC3B	12007	chr3:171944737:+	CLDN1	49303	chr3:190030825:-	ONLY_REF_SPLICE	YES	152	1019	0.01	0	0.0114	0.0114	FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,CLDN1->chr3:190023490-190040264:-,claudin_1	PLCPRF5_LIVER	0	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	GPR126--VTA1	1	1	GPR126	5956	chr6:142691930:+	VTA1	41643	chr6:142519576:+	ONLY_REF_SPLICE	YES	202	162	0.01	0.01	0.0114	0.0114	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	PLCPRF5_LIVER	0.01	0.01	0.0228	FALSE	0	0	0	3	0	FALSE	ACH-001318
PLCPRF5_LIVER	KB-1615E4.2--SPAG1	1	1	KB-1615E4.2	1162	chr8:101488064:+	SPAG1	8454	chr8:101174507:+	ONLY_REF_SPLICE	NO	1	10	0.67	0.17	0.0114	0.0114	KB-1615E4.2->chr8:101487903-101513376:+,SPAG1->chr8:101170134-101271506:+,sperm_associated_antigen_1	PLCPRF5_LIVER	0.17	0.67	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	KLF10--FOXK2	1	1	KLF10	1337	chr8:103667794:-	FOXK2	27140	chr17:80559179:+	ONLY_REF_SPLICE	YES	208	87	0.01	0.02	0.0114	0.0114	KLF10->Kruppel-like_factor_10,chr8:103661007-103668130:-,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	PLCPRF5_LIVER	0.01	0.02	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	LENG8--SUN1	1	1	LENG8	1420	chr19:54960484:+	SUN1	40751	chr7:908986:+	ONLY_REF_SPLICE	NO	29	199	0.06	0.01	0.0114	0.0114	LENG8->chr19:54960065-54973217:+,leukocyte_receptor_cluster_(LRC)_member_8,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	PLCPRF5_LIVER	0.01	0.06	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	MARK3--EIF5	1	1	MARK3	18733	chr14:103941547:+	EIF5	34258	chr14:103803014:+	ONLY_REF_SPLICE	NO	95	328	0.02	0.01	0.0114	0.0114	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},LOCAL_REARRANGEMENT:+:[40367],MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3,EIF5->chr14:103799881-103811362:+,eukaryotic_translation_initiation_factor_5	PLCPRF5_LIVER	0.01	0.02	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	MRPL11--CFL1	1	1	MRPL11	1826	chr11:66233384:-	CFL1	18585	chr11:65594080:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0114	0.0114	MRPL11->chr11:66202546-66234209:-,mitochondrial_ribosomal_protein_L11,CFL1->chr11:65590493-65629497:-,cofilin_1	PLCPRF5_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	PKNOX1--SIK1	1	1	PKNOX1	1155	chr21:44394774:+	SIK1	21971	chr21:44846072:-	ONLY_REF_SPLICE	YES	1	270	0.67	0.01	0.0114	0.0114	PKNOX1->Oncogene{Bushman},PBX/knotted_1_homeobox_1,chr21:44394620-44453691:+,SIK1->chr21:44834395-44847008:-,salt_inducible_kinase_1	PLCPRF5_LIVER	0.01	0.67	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	POLR2J3--IGF2BP2	1	1	POLR2J3	3024	chr7:102210282:-	IGF2BP2	23165	chr3:185416135:-	ONLY_REF_SPLICE	NO	148	142	0.01	0.01	0.0114	0.0114	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2	PLCPRF5_LIVER	0.01	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	REV1--PSMB1	1	1	REV1	1219	chr2:100106279:-	PSMB1	35032	chr6:170858201:-	ONLY_REF_SPLICE	NO	20	917	0.09	0	0.0114	0.0114	REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	PLCPRF5_LIVER	0	0.09	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	4	193	0.33	0.01	0.0114	0.0114	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PLCPRF5_LIVER	0.01	0.33	0.0228	FALSE	0	48	1	163	0	FALSE	ACH-001318
PLCPRF5_LIVER	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0114	0.0114	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PLCPRF5_LIVER	1	1	0.0228	FALSE	192	492	57	212	0	FALSE	ACH-001318
PLCPRF5_LIVER	SEPW1--CSRP2BP	1	1	SEPW1	1243	chr19:48282071:+	CSRP2BP	11503	chr20:18122852:+	ONLY_REF_SPLICE	YES	88	4	0.02	0.33	0.0114	0.0114	SEPW1->chr19:48281829-48287943:+,selenoprotein_W,_1,CSRP2BP->Oncogene{Bushman},chr20:18118762-18169031:+	PLCPRF5_LIVER	0.02	0.33	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	SIK1--ACTB	1	1	SIK1	1119	chr21:44846890:-	ACTB	18599	chr7:5569294:-	ONLY_REF_SPLICE	YES	150	132	0.01	0.01	0.0114	0.0114	GTEx_FI:{Skin=[count:3=pct:1.0],Heart=[count:1=pct:0.4]},GTEx_v2:{count=10;pct=0.12%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Vagina=1,Artery_-_Coronary=1,Thyroid=1,Heart_-_Atrial_Appendage=1},SIK1->chr21:44834395-44847008:-,salt_inducible_kinase_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	PLCPRF5_LIVER	0.01	0.01	0.0228	FALSE	3	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	SIK2--RP11-356J5.12	1	1	SIK2	3489	chr11:111491126:+	RP11-356J5.12	31794	chr11:112164450:+	ONLY_REF_SPLICE	YES	121	0	0.02	1	0.0114	0.0114	SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2,RP11-356J5.12->chr11:112141472-112233257:+	PLCPRF5_LIVER	0.02	1	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	SVIL--NFE2L2	1	1	SVIL	24602	chr10:29801664:-	NFE2L2	64399	chr2:178098999:-	ONLY_REF_SPLICE	YES	144	208	0.01	0.01	0.0114	0.0114	SVIL->chr10:29746267-30025710:-,supervillin,NFE2L2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:178092323-178257425:-,nuclear_factor,_erythroid_2_like_2	PLCPRF5_LIVER	0.01	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-001318
PLCPRF5_LIVER	TMLHE--CT45A4	1	1	TMLHE	2332	chrX:154842453:-	CT45A4	17003	chrX:134950252:-	ONLY_REF_SPLICE	YES	12	2	0.14	0.5	0.0114	0.0114	TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,CT45A4->chrX:134928331-134953994:-	PLCPRF5_LIVER	0.14	0.5	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001318
PLCPRF5_LIVER	WDR6--CYHR1	1	1	WDR6	1470	chr3:49044964:+	CYHR1	20360	chr8:145678843:-	ONLY_REF_SPLICE	YES	99	23	0.02	0.08	0.0114	0.0114	WDR6->WD_repeat_domain_6,chr3:49044495-49053386:+,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	PLCPRF5_LIVER	0.02	0.08	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-001318
TT2609C02_THYROID	TIMM23--RP11-464F9.1	6	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	81	0	0.09	1	0.0989	0.033	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TT2609C02_THYROID	0.09	1	0.1319	TRUE	519	3926	326	965	0	FALSE	ACH-000716
TT2609C02_THYROID	PAAF1--FAM168A	4	1	PAAF1	2651	chr11:73589864:+	FAM168A	22154	chr11:73179537:-	ONLY_REF_SPLICE	YES	0	4	1	0.56	0.066	0.0165	PAAF1->chr11:73587744-73638790:+,proteasomal_ATPase_associated_factor_1,FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A	TT2609C02_THYROID	0.56	1	0.0825	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	NPM1P24--SET	4	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.066	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TT2609C02_THYROID	1	1	0.066	TRUE	0	0	0	434	0	FALSE	ACH-000716
TT2609C02_THYROID	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.066	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TT2609C02_THYROID	1	1	0.066	TRUE	465	1949	224	605	0	FALSE	ACH-000716
TT2609C02_THYROID	MSL2--RNF14	3	3	MSL2	3270	chr3:135913814:-	RNF14	21670	chr5:141362945:+	ONLY_REF_SPLICE	YES	6	7	0.5	0.46	0.0495	0.0495	HGNC_GENEFAM,MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila),RNF14->chr5:141337893-141369856:+,ring_finger_protein_14	TT2609C02_THYROID	0.46	0.5	0.099	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	CSDE1--SLC16A1	3	0	CSDE1	1752	chr1:115300546:-	SLC16A1	33837	chr1:113464755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0495	0	CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1,SLC16A1->Oncogene{Bushman},chr1:113454469-113499635:-,solute_carrier_family_16_member_1	TT2609C02_THYROID	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	GRB2--HSPE1	3	0	GRB2	1198	chr17:73401593:-	HSPE1	15317	chr2:198365044:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	GRB2->Oncogene{Bushman},chr17:73314157-73401790:-,growth_factor_receptor_bound_protein_2,HSPE1->chr2:198364718-198368181:+,heat_shock_protein_family_E_(Hsp10)_member_1	TT2609C02_THYROID	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	MTOR--TRIM21	3	0	MTOR	26548	chr1:11259646:-	TRIM21	64798	chr11:4406576:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	MTOR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:11166592-11322564:-,mechanistic_target_of_rapamycin,TRIM21->chr11:4406127-4414926:-,tripartite_motif_containing_21	TT2609C02_THYROID	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	PEX26--RPSA	3	0	PEX26	3882	chr22:18566259:+	RPSA	36764	chr3:39453173:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	PEX26->chr22:18560689-18613905:+,peroxisomal_biogenesis_factor_26,RPSA->chr3:39448180-39454033:+,ribosomal_protein_SA	TT2609C02_THYROID	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	PRKCD--CAPG	3	0	PRKCD	17465	chr3:53226330:+	CAPG	32199	chr2:85621992:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	PRKCD->Oncogene{Bushman},chr3:53190025-53226733:+,protein_kinase_C_delta,CAPG->Oncogene{Bushman},capping_actin_protein,_gelsolin_like,chr2:85621871-85645555:-	TT2609C02_THYROID	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	RP11-603J24.17--TBC1D22A	3	0	RP11-603J24.17	2388	chr12:56498444:-	TBC1D22A	25809	chr22:47569518:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	RP11-603J24.17->chr12:56498398-56507689:-,TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+	TT2609C02_THYROID	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	SDCBP--KPNB1	3	0	SDCBP	4943	chr8:59477625:+	KPNB1	20247	chr17:45730060:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0495	0	SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein,KPNB1->chr17:45726842-45762871:+,karyopherin_subunit_beta_1	TT2609C02_THYROID	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	ZNF251--HSPA9	3	0	ZNF251	3735	chr8:145979068:-	HSPA9	21974	chr5:137893122:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	ZNF251->chr8:145946298-145981802:-,zinc_finger_protein_251,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	TT2609C02_THYROID	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.033	0.033	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TT2609C02_THYROID	0.44	1	0.066	FALSE	164	806	69	479	0	FALSE	ACH-000716
TT2609C02_THYROID	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	TT2609C02_THYROID	1	1	0.033	TRUE	347	1186	183	220	0	FALSE	ACH-000716
TT2609C02_THYROID	DHX30--MAP4	2	0	DHX30	13411	chr3:47870624:+	MAP4	53134	chr3:47913590:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=7;pct=0.08%;dist=Stomach=1,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Thyroid=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[497],DHX30->DEAH-box_helicase_30,chr3:47844399-47891685:+,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	TT2609C02_THYROID	1	1	0.033	TRUE	1	1	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	DIP2C--CTSC	2	0	DIP2C	12854	chr10:454866:-	CTSC	61013	chr11:88045722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,CTSC->cathepsin_C,chr11:88026760-88070955:-	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	GATAD2A--PABPC1	2	0	GATAD2A	14574	chr19:19607028:+	PABPC1	33363	chr8:101721451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	JTB--SNAPIN	2	0	JTB	2863	chr1:153948302:-	SNAPIN	7905	chr1:153631614:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	{Klijn_CCL:Uterus=1,Ovary=1},JTB->chr1:153946745-153950164:-,jumping_translocation_breakpoint,SNAPIN->SNAP_associated_protein,chr1:153631130-153634306:+	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	3	0	TRUE	ACH-000716
TT2609C02_THYROID	MOB3A--UQCR11	2	0	MOB3A	5013	chr19:2085174:-	UQCR11	16696	chr19:1599559:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	MOB3A->MOB_kinase_activator_3A,chr19:2071037-2096672:-,UQCR11->chr19:1578338-1605444:-,chr19:1597171-1605480:-,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_XI	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	NBAS--YWHAQ	2	0	NBAS	39556	chr2:15470722:-	YWHAQ	69006	chr2:9727638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	PPP1R12C--SLCO4A1	2	0	PPP1R12C	8950	chr19:55610152:-	SLCO4A1	30846	chr20:61303102:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	PPP2R5C--PBX3	2	0	PPP2R5C	10176	chr14:102276373:+	PBX3	50596	chr9:128677965:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma,PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	SP100--RIMS2	2	0	SP100	1387	chr2:231281043:+	RIMS2	80639	chr8:105257144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	SP100->SP100_nuclear_antigen,chr2:231280657-231408805:+,RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	SSX2IP--VRK2	2	0	SSX2IP	1433	chr1:85156054:-	VRK2	39963	chr2:58350236:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	SSX2IP->chr1:85109390-85156486:-,synovial_sarcoma,_X_breakpoint_2_interacting_protein,VRK2->chr2:58134786-58387055:+,vaccinia_related_kinase_2	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	UBAP2--PCBP2	2	0	UBAP2	17455	chr9:33953283:-	PCBP2	46238	chr12:53854799:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	USMG5--ARHGAP11B	2	0	USMG5	1058	chr10:105156166:-	ARHGAP11B	23830	chr15:31008423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	USMG5->chr10:105148798-105156223:-,up-regulated_during_skeletal_muscle_growth_5_homolog_(mouse),ARHGAP11B->Rho_GTPase_activating_protein_11B,chr15:30916697-31065196:+	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	USP22--AURKA	2	0	USP22	8180	chr17:20919065:-	AURKA	24162	chr20:54965721:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	USP22->chr17:20902910-20947073:-,ubiquitin_specific_peptidase_22,AURKA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},aurora_kinase_A,chr20:54944445-54967393:-	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	ZBTB4--FAM101B	2	0	ZBTB4	2330	chr17:7382775:-	FAM101B	13473	chr17:295730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	ZBTB4->chr17:7362685-7387582:-,zinc_finger_and_BTB_domain_containing_4,FAM101B->chr17:289769-295730:-,family_with_sequence_similarity_101_member_B	TT2609C02_THYROID	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	KIF13B--WHSC1L1	1	1	KIF13B	1145	chr8:29120497:-	WHSC1L1	55717	chr8:38205733:-	ONLY_REF_SPLICE	YES	2	8	0.5	0.2	0.0165	0.0165	KIF13B->chr8:28924796-29120641:-,kinesin_family_member_13B,WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-	TT2609C02_THYROID	0.2	0.5	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
TT2609C02_THYROID	TRIM44--PTPRA	1	1	TRIM44	3054	chr11:35706884:+	PTPRA	18983	chr20:2944918:+	ONLY_REF_SPLICE	YES	17	7	0.11	0.22	0.0165	0.0165	TRIM44->chr11:35684353-35829775:+,tripartite_motif_containing_44,PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A	TT2609C02_THYROID	0.11	0.22	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000716
COV644_OVARY	JTB--SNAPIN	377	180	JTB	2863	chr1:153948302:-	SNAPIN	7905	chr1:153631614:+	ONLY_REF_SPLICE	YES	279	146	0.67	0.79	6.9195	3.3037	{Klijn_CCL:Uterus=1,Ovary=1},JTB->chr1:153946745-153950164:-,jumping_translocation_breakpoint,SNAPIN->SNAP_associated_protein,chr1:153631130-153634306:+	COV644_OVARY	0.67	0.79	10.2232	TRUE	0	0	0	3	0	TRUE	ACH-000608
COV644_OVARY	JTB--SNAPIN	15	183	JTB	2863	chr1:153948302:-	SNAPIN	7593	chr1:153631302:+	INCL_NON_REF_SPLICE	YES	279	46	0.42	0.81	0.2753	3.3588	{Klijn_CCL:Uterus=1,Ovary=1},JTB->chr1:153946745-153950164:-,jumping_translocation_breakpoint,SNAPIN->SNAP_associated_protein,chr1:153631130-153634306:+	COV644_OVARY	0.42	0.81	3.6341	TRUE	0	0	0	3	0	TRUE	ACH-000608
COV644_OVARY	JTB--SNAPIN	19	131	JTB	2863	chr1:153948302:-	SNAPIN	8215	chr1:153631924:+	ONLY_REF_SPLICE	YES	279	147	0.35	0.51	0.3487	2.4044	{Klijn_CCL:Uterus=1,Ovary=1},JTB->chr1:153946745-153950164:-,jumping_translocation_breakpoint,SNAPIN->SNAP_associated_protein,chr1:153631130-153634306:+	COV644_OVARY	0.35	0.51	2.7531	TRUE	0	0	0	3	0	TRUE	ACH-000608
COV644_OVARY	MT-ND4--MT-ND4L	28	31	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	1771	2	0.03	0.97	0.5139	0.569	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COV644_OVARY	0.03	0.97	1.0829	FALSE	344	827	44	306	0	FALSE	ACH-000608
COV644_OVARY	CNOT2--PTPRR	28	22	CNOT2	13086	chr12:70713144:+	PTPRR	39227	chr12:71158558:-	ONLY_REF_SPLICE	YES	24	0	0.68	1	0.5139	0.4038	{Klijn_CCL:Ovary=1},CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,PTPRR->chr12:71031853-71314623:-,protein_tyrosine_phosphatase,_receptor_type_R	COV644_OVARY	0.68	1	0.9177	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	JTB--SNAPIN	6	63	JTB	2863	chr1:153948302:-	SNAPIN	9334	chr1:153633676:+	ONLY_REF_SPLICE	YES	279	212	0.2	0.25	0.1101	1.1563	{Klijn_CCL:Uterus=1,Ovary=1},JTB->chr1:153946745-153950164:-,jumping_translocation_breakpoint,SNAPIN->SNAP_associated_protein,chr1:153631130-153634306:+	COV644_OVARY	0.2	0.25	1.2664	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	MT-ND6--MT-ND5	16	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2937	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	COV644_OVARY	1	1	0.2937	FALSE	101	855	57	72	0	FALSE	ACH-000608
COV644_OVARY	MT-TA--MT-TC	14	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.257	0.0184	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COV644_OVARY	1	1	0.2754	FALSE	462	80	0	856	0	FALSE	ACH-000608
COV644_OVARY	GATAD2B--NUP210L	11	4	GATAD2B	1243	chr1:153895209:-	NUP210L	23872	chr1:154112428:-	ONLY_REF_SPLICE	YES	3	0	0.83	1	0.2019	0.0734	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	COV644_OVARY	0.83	1	0.2753	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	CNOT2--PTPRR	8	12	CNOT2	11745	chr12:70704797:+	PTPRR	39227	chr12:71158558:-	ONLY_REF_SPLICE	YES	22	0	0.48	1	0.1468	0.2202	{Klijn_CCL:Ovary=1},CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,PTPRR->chr12:71031853-71314623:-,protein_tyrosine_phosphatase,_receptor_type_R	COV644_OVARY	0.48	1	0.367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	INTS3--S100A8	7	0	INTS3	1718	chr1:153701260:+	S100A8	30618	chr1:153363033:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1285	0	INTS3->chr1:153700543-153746555:+,integrator_complex_subunit_3,S100A8->Oncogene{Bushman},S100_calcium_binding_protein_A8,chr1:153362508-153363664:-	COV644_OVARY	1	1	0.1285	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	GATAD2B--NUP210L	6	1	GATAD2B	1243	chr1:153895209:-	NUP210L	32563	chr1:154076686:-	ONLY_REF_SPLICE	YES	3	12	0.7	0.37	0.1101	0.0184	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	COV644_OVARY	0.37	0.7	0.1285	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	MT-ND6--MT-ND5	6	0	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1101	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	COV644_OVARY	1	1	0.1101	FALSE	101	855	57	72	0	FALSE	ACH-000608
COV644_OVARY	ZNF213--MT-ND5	6	0	ZNF213	9158	chr16:3192521:+	MT-ND5	14162	chrM:14055:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1101	0	ZNF213->chr16:3179778-3192806:+,zinc_finger_protein_213,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	COV644_OVARY	1	1	0.1101	FALSE	0	0	0	1	0	FALSE	ACH-000608
COV644_OVARY	MT-ND4--MT-ND4L	3	11	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	33	1	0.3	0.93	0.0551	0.2019	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COV644_OVARY	0.3	0.93	0.257	FALSE	344	827	44	306	0	FALSE	ACH-000608
COV644_OVARY	MT-ND6--MT-ND5	5	1	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	655	1	0.01	0.0918	0.0184	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	COV644_OVARY	0.01	1	0.1102	FALSE	101	855	57	72	0	FALSE	ACH-000608
COV644_OVARY	ADARB1--SIK1	5	0	ADARB1	1051	chr21:46493818:+	SIK1	34120	chr21:44846072:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0918	0	ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+,SIK1->chr21:44834395-44847008:-,salt_inducible_kinase_1	COV644_OVARY	1	1	0.0918	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	XPNPEP1--PLXDC2	4	3	XPNPEP1	18487	chr10:111635286:-	PLXDC2	36981	chr10:20453397:+	ONLY_REF_SPLICE	YES	12	0	0.37	1	0.0734	0.0551	XPNPEP1->X-prolyl_aminopeptidase_(aminopeptidase_P)_1,_soluble,chr10:111624524-111683311:-,PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2	COV644_OVARY	0.37	1	0.1285	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	MT-ND6--MT-ND5	4	1	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	702	1	0.01	0.0734	0.0184	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	COV644_OVARY	0.01	1	0.0918	FALSE	101	855	57	72	0	FALSE	ACH-000608
COV644_OVARY	CPSF6--PDXK	4	0	CPSF6	11046	chr12:69656342:+	PDXK	26982	chr21:45153950:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0734	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PDXK->Oncogene{Bushman},chr21:45138975-45182188:+,pyridoxal_(pyridoxine,_vitamin_B6)_kinase	COV644_OVARY	1	1	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	FNDC3A--SETDB2	3	1	FNDC3A	4220	chr13:49649500:+	SETDB2	45302	chr13:50054355:+	ONLY_REF_SPLICE	YES	6	6	0.4	0.4	0.0551	0.0184	FNDC3A->chr13:49550048-49783915:+,fibronectin_type_III_domain_containing_3A,SETDB2->SET_domain_bifurcated_2,chr13:50018429-50069138:+	COV644_OVARY	0.4	0.4	0.0735	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	ANO9--MTATP6P1	3	0	ANO9	7155	chr11:428745:-	MTATP6P1	15417	chr1:569326:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	ANO9->anoctamin_9,chr11:417933-442011:-,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	COV644_OVARY	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	COL6A1--MT-ND5	3	0	COL6A1	19159	chr21:47424346:+	MT-ND5	24555	chrM:14114:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	COV644_OVARY	1	1	0.0551	FALSE	0	0	0	1	0	FALSE	ACH-000608
COV644_OVARY	FAM114A2--CMTM6	3	0	FAM114A2	17377	chr5:153371818:-	CMTM6	27256	chr3:32525468:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	FAM114A2->chr5:153369688-153418496:-,family_with_sequence_similarity_114_member_A2,CMTM6->CKLF_like_MARVEL_transmembrane_domain_containing_6,chr3:32522804-32544900:-	COV644_OVARY	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	FKBP5--PPP1R15B	3	0	FKBP5	9083	chr6:35565055:-	PPP1R15B	26980	chr1:204379824:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	FKBP5->FK506_binding_protein_5,chr6:35541362-35696360:-,PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B	COV644_OVARY	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	LZTS2--AKAP12	3	0	LZTS2	10800	chr10:102766578:+	AKAP12	21819	chr6:151671667:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	LZTS2->chr10:102756375-102767593:+,leucine_zipper,_putative_tumor_suppressor_2,AKAP12->A-kinase_anchoring_protein_12,Oncogene{Bushman},chr6:151561134-151679692:+	COV644_OVARY	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	MYRF--RBM5	3	0	MYRF	21807	chr11:61554999:+	RBM5	48177	chr3:50154540:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	MYRF->chr11:61520114-61555990:+,myelin_regulatory_factor,RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+	COV644_OVARY	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	PRPF38A--OGDH	3	0	PRPF38A	3398	chr1:52874362:+	OGDH	21486	chr7:44687256:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0551	0	PRPF38A->chr1:52870236-52886511:+,pre-mRNA_processing_factor_38A,OGDH->chr7:44646171-44748665:+,oxoglutarate_dehydrogenase	COV644_OVARY	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	RNF216--RALB	3	0	RNF216	8751	chr7:5792477:-	RALB	41963	chr2:121050717:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0551	0	RNF216->Oncogene{Bushman},chr7:5659678-5821370:-,ring_finger_protein_216,RALB->Oncogene{Bushman},chr2:120997640-121052289:+,v-ral_simian_leukemia_viral_oncogene_homolog_B	COV644_OVARY	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	SLC3A2--MT-CO1	3	0	SLC3A2	13083	chr11:62655920:+	MT-CO1	16955	chrM:6343:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COV644_OVARY	1	1	0.0551	FALSE	0	0	0	1	0	FALSE	ACH-000608
COV644_OVARY	TSSC1--RP11-603J24.7	3	0	TSSC1	13955	chr2:3217974:-	RP11-603J24.7	24853	chr12:56374412:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1,RP11-603J24.7->chr12:56374216-56374819:-	COV644_OVARY	1	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	GATAD2B--NUP210L	2	2	GATAD2B	1243	chr1:153895209:-	NUP210L	26156	chr1:154108448:-	ONLY_REF_SPLICE	NO	3	7	0.57	0.36	0.0367	0.0367	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	COV644_OVARY	0.36	0.57	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	BAZ1B--KIAA0368	2	0	BAZ1B	16687	chr7:72873866:-	KIAA0368	51964	chr9:114170952:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-,KIAA0368->KIAA0368,chr9:114122972-114247025:-	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	CD63--CTNNA1	2	0	CD63	3818	chr12:56120674:-	CTNNA1	20562	chr5:138145727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	CD63->CD63_molecule,chr12:56119107-56123491:-,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	CFL1--BSDC1	2	0	CFL1	6251	chr11:65623406:-	BSDC1	21826	chr1:32844440:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	CFL1->chr11:65590493-65629497:-,cofilin_1,BSDC1->BSD_domain_containing_1,chr1:32830704-32860332:-	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	CHFR--FOCAD	2	0	CHFR	2239	chr12:133522207:-	FOCAD	66294	chr9:20907149:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,FOCAD->chr9:20658308-20995954:+,focadhesin	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	CHM--CHMP1A	2	0	CHM	2383	chrX:85282495:-	CHMP1A	31859	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	CHM->CHM,_Rab_escort_protein_1,chrX:85116185-85302566:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	GATAD2B--NUP210L	1	4	GATAD2B	1243	chr1:153895209:-	NUP210L	22778	chr1:154114000:-	ONLY_REF_SPLICE	NO	3	0	0.62	1	0.0184	0.0734	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	COV644_OVARY	0.62	1	0.0918	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	GSTCD--AIMP1	2	0	GSTCD	7953	chr4:106650656:+	AIMP1	29563	chr4:107268683:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	GSTCD->chr4:106629935-106768885:+,glutathione_S-transferase_C-terminal_domain_containing,AIMP1->aminoacyl_tRNA_synthetase_complex-interacting_multifunctional_protein_1,chr4:107236701-107270383:+	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	HDAC9--DTNBP1	2	0	HDAC9	16243	chr7:18549069:+	DTNBP1	62731	chr6:15638035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	HDAC9->chr7:18126572-19042039:+,histone_deacetylase_9,DTNBP1->chr6:15523032-15663289:-,dystrobrevin_binding_protein_1	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	JTB--HDAC3	2	0	JTB	2863	chr1:153948302:-	HDAC3	13917	chr5:141005850:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	JTB->chr1:153946745-153950164:-,jumping_translocation_breakpoint,HDAC3->Oncogene{Bushman},chr5:141000443-141016437:-,histone_deacetylase_3	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	MPHOSPH10--DDX17	2	0	MPHOSPH10	5574	chr2:71365761:+	DDX17	18592	chr22:38897285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	MPHOSPH10->M-phase_phosphoprotein_10,chr2:71357444-71377231:+,DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	NHLRC3--MLLT4	2	0	NHLRC3	2406	chr13:39613848:+	MLLT4	15958	chr6:168271063:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	NHLRC3->NHL_repeat_containing_3,chr13:39612443-39624246:+,MLLT4->Oncogene{Bushman},chr6:168227602-168372703:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_4	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	NUP210L--S100A8	2	0	NUP210L	18070	chr1:154061897:-	S100A8	44326	chr1:153363033:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like,S100A8->Oncogene{Bushman},S100_calcium_binding_protein_A8,chr1:153362508-153363664:-	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	RAB21--MARVELD2	2	0	RAB21	1415	chr12:72149068:+	MARVELD2	17291	chr5:68715198:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	RAB21->RAB21,_member_RAS_oncogene_family,chr12:72148654-72184699:+,MARVELD2->MARVEL_domain_containing_2,chr5:68710939-68740157:+	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	SETD8--CDK2AP1	2	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	18	0	TRUE	ACH-000608
COV644_OVARY	ZC3H7A--ADCY9	2	0	ZC3H7A	1144	chr16:11890980:-	ADCY9	35264	chr16:4043511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-	COV644_OVARY	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000608
COV644_OVARY	GATAD2B--NUP210L	1	2	GATAD2B	1243	chr1:153895209:-	NUP210L	28384	chr1:154099893:-	ONLY_REF_SPLICE	YES	3	15	0.5	0.17	0.0184	0.0367	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	COV644_OVARY	0.17	0.5	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000608
SNU475_LIVER	TIMM23B--LINC00843	145	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.7092	0.3418	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU475_LIVER	0.99	1	2.051	TRUE	508	994	45	981	0	FALSE	ACH-000422
SNU475_LIVER	TIMM23--RP11-464F9.1	70	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	296	0	0.2	1	0.8251	0.0354	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU475_LIVER	0.2	1	0.8605	TRUE	519	3926	326	965	0	FALSE	ACH-000422
SNU475_LIVER	RP11-344E13.3--UBBP4	36	52	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	35	0	0.72	1	0.4243	0.6129	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	SNU475_LIVER	0.72	1	1.0372	TRUE	23	13	0	54	0	FALSE	ACH-000422
SNU475_LIVER	HSP90AB1--MT-RNR2	28	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2778	0	0.01	1	0.33	0.0354	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU475_LIVER	0.01	1	0.3654	FALSE	13	9	0	364	0	FALSE	ACH-000422
SNU475_LIVER	RP11-123O10.4--GRIP1	24	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	2	1	0.94	0.2829	0.0589	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU475_LIVER	0.94	1	0.3418	FALSE	416	2512	207	587	0	FALSE	ACH-000422
SNU475_LIVER	RP11-680G10.1--GSE1	22	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	22	1	0.52	0.2593	0.0236	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU475_LIVER	0.52	1	0.2829	TRUE	465	1949	224	605	0	FALSE	ACH-000422
SNU475_LIVER	NRIP1--AF127936.7	21	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2475	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU475_LIVER	1	1	0.2475	FALSE	292	1546	117	613	0	FALSE	ACH-000422
SNU475_LIVER	AP003900.6--AC008132.1	19	5	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.224	0.0589	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SNU475_LIVER	1	1	0.2829	TRUE	0	0	0	25	0	FALSE	ACH-000422
SNU475_LIVER	HSP90AB1--MT-RNR2	19	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2817	0	0.01	1	0.224	0.0354	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU475_LIVER	0.01	1	0.2594	FALSE	13	9	0	364	0	FALSE	ACH-000422
SNU475_LIVER	RP11-680G10.1--GSE1	18	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	8	1	0.72	0.2122	0.0354	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU475_LIVER	0.72	1	0.2476	TRUE	458	1351	185	561	0	FALSE	ACH-000422
SNU475_LIVER	MT-TA--MT-TC	16	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1886	0.0236	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU475_LIVER	1	1	0.2122	FALSE	462	80	0	856	0	FALSE	ACH-000422
SNU475_LIVER	AK4--DNAJC6	12	10	AK4	2004	chr1:65614235:+	DNAJC6	23148	chr1:65830318:+	ONLY_REF_SPLICE	YES	20	3	0.52	0.88	0.1414	0.1179	NEIGHBORS[16074],AK4->adenylate_kinase_4,chr1:65613232-65697828:+,DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+	SNU475_LIVER	0.52	0.88	0.2593	FALSE	0	0	0	1	0	FALSE	ACH-000422
SNU475_LIVER	TMED8--CTD-2231H16.1	13	5	TMED8	1174	chr14:77843279:-	CTD-2231H16.1	17124	chr5:113366:+	ONLY_REF_SPLICE	YES	16	2	0.53	0.9	0.1532	0.0589	TMED8->chr14:77801364-77843452:-,transmembrane_p24_trafficking_protein_family_member_8,CTD-2231H16.1->chr5:92266-139978:+	SNU475_LIVER	0.53	0.9	0.2121	TRUE	0	0	0	1	0	TRUE	ACH-000422
SNU475_LIVER	NPM1P24--SET	13	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1532	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU475_LIVER	1	1	0.1532	TRUE	0	0	0	434	0	FALSE	ACH-000422
SNU475_LIVER	RP1-34H18.1--NAV3	10	3	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	2	1	0.87	0.1179	0.0354	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SNU475_LIVER	0.87	1	0.1533	TRUE	254	575	65	124	0	FALSE	ACH-000422
SNU475_LIVER	C15orf57--CBX3	6	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	40	36	0.31	0.33	0.0707	0.1414	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU475_LIVER	0.31	0.33	0.2121	TRUE	267	562	48	632	0	FALSE	ACH-000422
SNU475_LIVER	RP11-475J5.11--MT-TE	9	0	RP11-475J5.11	1050	chr5:99382203:+	MT-TE	4547	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1061	0	RP11-475J5.11->chr5:99382154-99382674:+,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU475_LIVER	1	1	0.1061	FALSE	23	84	17	2	0	FALSE	ACH-000422
SNU475_LIVER	MT-CO1--COL3A1	8	1	MT-CO1	1605	chrM:6508:+	COL3A1	28798	chr2:189872273:+	INCL_NON_REF_SPLICE	YES	17052	3940	0	0	0.0943	0.0118	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	SNU475_LIVER	0	0	0.1061	FALSE	0	0	0	12	0	FALSE	ACH-000422
SNU475_LIVER	RP11-475J5.11--MT-TE	8	0	RP11-475J5.11	1052	chr5:99382205:+	MT-TE	4550	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0943	0	RP11-475J5.11->chr5:99382154-99382674:+,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU475_LIVER	1	1	0.0943	FALSE	23	84	17	2	0	FALSE	ACH-000422
SNU475_LIVER	MT-ATP6--MT-CO1	7	3	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	10347	18184	0	0	0.0825	0.0354	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU475_LIVER	0	0	0.1179	FALSE	183	104	9	328	0	FALSE	ACH-000422
SNU475_LIVER	PTPRK--MBTD1	7	2	PTPRK	18707	chr6:128410835:-	MBTD1	56767	chr17:49302570:-	ONLY_REF_SPLICE	YES	55	3	0.14	0.75	0.0825	0.0236	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	SNU475_LIVER	0.14	0.75	0.1061	TRUE	0	0	0	1	0	TRUE	ACH-000422
SNU475_LIVER	AP003900.6--AC008132.1	5	8	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0589	0.0943	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SNU475_LIVER	0.93	1	0.1532	TRUE	1	1	0	28	1	FALSE	ACH-000422
SNU475_LIVER	MT-ATP6--MT-CO1	6	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10446	19485	0	0	0.0707	0.0354	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU475_LIVER	0	0	0.1061	FALSE	183	104	9	328	0	FALSE	ACH-000422
SNU475_LIVER	MT-TA--MT-TC	6	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0707	0.0236	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU475_LIVER	1	1	0.0943	FALSE	462	80	0	856	0	FALSE	ACH-000422
SNU475_LIVER	NIPA2--POLA1	6	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0707	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SNU475_LIVER	1	1	0.0707	TRUE	46	1352	75	139	0	FALSE	ACH-000422
SNU475_LIVER	MT-ATP6--MT-CO1	5	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	8558	19138	0	0	0.0589	0.0236	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU475_LIVER	0	0	0.0825	FALSE	183	104	9	328	0	FALSE	ACH-000422
SNU475_LIVER	TBL1X--SHROOM2	5	2	TBL1X	3678	chrX:9469889:+	SHROOM2	29838	chrX:9841692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0589	0.0236	NEIGHBORS[66716],TBL1X->chrX:9431335-9687780:+,transducin_(beta)-like_1X-linked,SHROOM2->chrX:9754496-9917483:+,shroom_family_member_2	SNU475_LIVER	1	1	0.0825	FALSE	0	1	0	1	0	FALSE	ACH-000422
SNU475_LIVER	SEPT11--SHROOM3	5	1	SEPT11	1228	chr4:77871083:+	SHROOM3	46987	chr4:77670170:+	ONLY_REF_SPLICE	YES	62	6	0.09	0.5	0.0589	0.0118	{Klijn_CCL:Liver=1},SEPT11->chr4:77870856-77961537:+,septin_11,SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3	SNU475_LIVER	0.09	0.5	0.0707	TRUE	0	0	0	1	0	TRUE	ACH-000422
SNU475_LIVER	FLNA--GSTP1	5	0	FLNA	6818	chrX:153593263:-	GSTP1	24992	chr11:67351283:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0589	0	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},FLNA->chrX:153576892-153603006:-,filamin_A,GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1	SNU475_LIVER	1	1	0.0589	TRUE	0	0	0	1	0	TRUE	ACH-000422
SNU475_LIVER	MT-ATP6--MT-CO1	4	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2760	19761	0	0	0.0471	0.0354	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU475_LIVER	0	0	0.0825	FALSE	183	104	9	328	0	FALSE	ACH-000422
SNU475_LIVER	AK4--DNAJC6	2	10	AK4	2004	chr1:65614235:+	DNAJC6	22035	chr1:65811294:+	ONLY_REF_SPLICE	YES	20	3	0.38	0.8	0.0236	0.1179	NEIGHBORS[16074],AK4->adenylate_kinase_4,chr1:65613232-65697828:+,DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+	SNU475_LIVER	0.38	0.8	0.1415	FALSE	0	0	0	1	0	FALSE	ACH-000422
SNU475_LIVER	MT-TA--MT-TC	4	1	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0.0118	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU475_LIVER	1	1	0.0589	FALSE	462	80	0	856	0	FALSE	ACH-000422
SNU475_LIVER	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU475_LIVER	1	1	0.0471	FALSE	462	80	0	856	0	FALSE	ACH-000422
SNU475_LIVER	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU475_LIVER	1	1	0.0471	TRUE	0	0	0	434	0	FALSE	ACH-000422
SNU475_LIVER	MT-ATP6--MT-CO1	3	3	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	1484	17972	0	0	0.0354	0.0354	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU475_LIVER	0	0	0.0708	FALSE	183	104	9	328	0	FALSE	ACH-000422
SNU475_LIVER	AP003900.6--AC008132.1	3	2	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0.0236	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SNU475_LIVER	1	1	0.059	TRUE	0	0	0	16	0	TRUE	ACH-000422
SNU475_LIVER	COL3A1--COL4A1	3	2	COL3A1	19718	chr2:189867735:+	COL4A1	57039	chr13:110830502:-	INCL_NON_REF_SPLICE	NO	3115	383	0	0.01	0.0354	0.0236	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	SNU475_LIVER	0	0.01	0.059	FALSE	0	0	0	1	0	FALSE	ACH-000422
SNU475_LIVER	RP11-475J5.11--MT-TE	3	2	RP11-475J5.11	1301	chr5:99382454:+	MT-TE	4560	chrM:14704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0.0236	RP11-475J5.11->chr5:99382154-99382674:+,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU475_LIVER	1	1	0.059	FALSE	23	84	17	2	0	FALSE	ACH-000422
SNU475_LIVER	AP003900.6--AC008132.1	3	1	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	0	2	1	0.67	0.0354	0.0118	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SNU475_LIVER	0.67	1	0.0472	TRUE	0	0	0	13	0	TRUE	ACH-000422
SNU475_LIVER	COL3A1--COL4A1	3	1	COL3A1	16770	chr2:189864286:+	COL4A1	39275	chr13:110861212:-	INCL_NON_REF_SPLICE	YES	2880	298	0	0.01	0.0354	0.0118	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	SNU475_LIVER	0	0.01	0.0472	FALSE	0	0	0	2	0	FALSE	ACH-000422
SNU475_LIVER	FLNA--GSTP1	3	1	FLNA	6858	chrX:153593223:-	GSTP1	25703	chr11:67351994:+	INCL_NON_REF_SPLICE	YES	2285	2528	0	0	0.0354	0.0118	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},FLNA->chrX:153576892-153603006:-,filamin_A,GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1	SNU475_LIVER	0	0	0.0472	FALSE	0	0	0	1	0	FALSE	ACH-000422
SNU475_LIVER	MT-ATP6--MT-CO1	3	1	MT-ATP6	1380	chrM:8906:+	MT-CO1	5953	chrM:7175:+	INCL_NON_REF_SPLICE	YES	10872	13261	0	0	0.0354	0.0118	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU475_LIVER	0	0	0.0472	FALSE	183	104	9	328	0	FALSE	ACH-000422
SNU475_LIVER	MT-ATP6--MT-CO1	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8385	19485	0	0	0.0354	0.0118	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU475_LIVER	0	0	0.0472	FALSE	183	104	9	328	0	FALSE	ACH-000422
SNU475_LIVER	RP11-624L4.1--RP11-265N7.1	3	1	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0.0118	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	SNU475_LIVER	1	1	0.0472	FALSE	0	20	1	20	0	FALSE	ACH-000422
SNU475_LIVER	ZDHHC24--PACS1	3	1	ZDHHC24	2794	chr11:66311175:-	PACS1	36642	chr11:66006275:+	ONLY_REF_SPLICE	YES	88	96	0.04	0.04	0.0354	0.0118	ZDHHC24->chr11:66288108-66313709:-,zinc_finger_DHHC-type_containing_24,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	SNU475_LIVER	0.04	0.04	0.0472	TRUE	0	0	0	1	0	FALSE	ACH-000422
SNU475_LIVER	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU475_LIVER	1	1	0.0354	TRUE	0	0	0	434	0	FALSE	ACH-000422
SNU475_LIVER	NRIP1--AF127936.7	3	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU475_LIVER	1	1	0.0354	FALSE	164	806	69	479	0	FALSE	ACH-000422
SNU475_LIVER	COL3A1--COL4A1	2	1	COL3A1	16787	chr2:189864303:+	COL4A1	40292	chr13:110859836:-	ONLY_REF_SPLICE	YES	3290	276	0	0.01	0.0236	0.0118	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	SNU475_LIVER	0	0.01	0.0354	FALSE	0	0	0	1	0	FALSE	ACH-000422
SNU475_LIVER	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	72	0.6	0.04	0.0236	0.0118	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU475_LIVER	0.04	0.6	0.0354	FALSE	16	356	14	466	0	FALSE	ACH-000422
SNU475_LIVER	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	3	1	0.5	0.0236	0.0118	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU475_LIVER	0.5	1	0.0354	FALSE	93	270	15	244	0	FALSE	ACH-000422
SNU475_LIVER	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	63	1	0.05	0.0236	0.0118	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU475_LIVER	0.05	1	0.0354	TRUE	64	13	3	59	0	FALSE	ACH-000422
SNU475_LIVER	SEPT11--SHROOM3	2	1	SEPT11	1228	chr4:77871083:+	SHROOM3	42617	chr4:77659914:+	ONLY_REF_SPLICE	YES	62	7	0.05	0.3	0.0236	0.0118	{Klijn_CCL:Liver=1},SEPT11->chr4:77870856-77961537:+,septin_11,SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3	SNU475_LIVER	0.05	0.3	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000422
SNU475_LIVER	AGBL3--PAXBP1	2	0	AGBL3	1194	chr7:134671452:+	PAXBP1	44161	chr21:34123529:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	AGBL3->ATP/GTP_binding_protein-like_3,chr7:134671259-134832715:+,PAXBP1->PAX3_and_PAX7_binding_protein_1,chr21:34106210-34144169:-	SNU475_LIVER	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000422
SNU475_LIVER	AP003900.6--AC008132.1	1	4	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0118	0.0471	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SNU475_LIVER	0.83	1	0.0589	TRUE	0	0	0	11	0	TRUE	ACH-000422
SNU475_LIVER	C19orf55--ZNF618	2	0	C19orf55	4308	chr19:36253378:+	ZNF618	29798	chr9:116798580:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C19orf55->chr19:36249044-36261930:+,ZNF618->chr9:116638562-116818871:+,zinc_finger_protein_618	SNU475_LIVER	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000422
SNU475_LIVER	HMGA2--LUM	2	0	HMGA2	5315	chr12:66232349:+	LUM	30462	chr12:91498096:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,LUM->chr12:91496406-91505608:-,lumican	SNU475_LIVER	1	1	0.0236	TRUE	0	0	0	8	0	TRUE	ACH-000422
SNU475_LIVER	NCOR2--UBC	2	0	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU475_LIVER	1	1	0.0236	TRUE	52	148	13	33	0	FALSE	ACH-000422
SNU475_LIVER	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU475_LIVER	1	1	0.0236	FALSE	25	145	6	90	0	FALSE	ACH-000422
SNU475_LIVER	PTPRK--FUS	2	0	PTPRK	5969	chr6:128718711:-	FUS	60253	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	SNU475_LIVER	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000422
SNU475_LIVER	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU475_LIVER	1	1	0.0236	TRUE	477	1352	189	275	0	FALSE	ACH-000422
SNU475_LIVER	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10590	chr16:85688400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU475_LIVER	1	1	0.0236	TRUE	64	13	3	59	0	FALSE	ACH-000422
SNU475_LIVER	AP003900.6--AC008132.1	1	2	AP003900.6	2187	chr21:11172043:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0118	0.0236	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SNU475_LIVER	0.75	1	0.0354	TRUE	0	0	0	3	0	TRUE	ACH-000422
SNU475_LIVER	UBE2L6--SF3B2	1	2	UBE2L6	3455	chr11:57327810:-	SF3B2	10288	chr11:65818991:+	ONLY_REF_SPLICE	YES	947	0	0	1	0.0118	0.0236	UBE2L6->chr11:57319129-57335757:-,ubiquitin_conjugating_enzyme_E2_L6,SF3B2->chr11:65818200-65836779:+,splicing_factor_3b_subunit_2	SNU475_LIVER	0	1	0.0354	FALSE	0	0	0	1	0	FALSE	ACH-000422
SNU475_LIVER	ARHGEF7--ANKRD10	1	1	ARHGEF7	4362	chr13:111806338:+	ANKRD10	44317	chr13:111563117:-	ONLY_REF_SPLICE	YES	28	40	0.07	0.05	0.0118	0.0118	ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,ANKRD10->ankyrin_repeat_domain_10,chr13:111530887-111567416:-	SNU475_LIVER	0.05	0.07	0.0236	TRUE	0	1	0	1	1	FALSE	ACH-000422
SNU475_LIVER	CPSF6--DAP3	1	1	CPSF6	11046	chr12:69656342:+	DAP3	35386	chr1:155708400:+	ONLY_REF_SPLICE	YES	147	28	0.01	0.07	0.0118	0.0118	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	SNU475_LIVER	0.01	0.07	0.0236	FALSE	0	1	0	3	0	FALSE	ACH-000422
SNU475_LIVER	PANK4--SKI	1	1	PANK4	1137	chr1:2457903:-	SKI	22492	chr1:2234417:+	ONLY_REF_SPLICE	NO	67	60	0.03	0.03	0.0118	0.0118	GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PANK4->chr1:2439972-2458039:-,pantothenate_kinase_4,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	SNU475_LIVER	0.03	0.03	0.0236	TRUE	1	1	0	4	0	FALSE	ACH-000422
SNU475_LIVER	POLE4--RP11-355F16.1	1	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	220	0	0.01	1	0.0118	0.0118	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	SNU475_LIVER	0.01	1	0.0236	FALSE	5	7	0	37	0	FALSE	ACH-000422
SNU475_LIVER	STAG1--RP11-85F14.5	1	1	STAG1	2296	chr3:136349712:-	RP11-85F14.5	47521	chr3:136565428:-	ONLY_REF_SPLICE	YES	47	13	0.04	0.13	0.0118	0.0118	LOCAL_REARRANGEMENT:-:[89348],STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,RP11-85F14.5->chr3:136560568-136580896:-	SNU475_LIVER	0.04	0.13	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000422
SNU475_LIVER	STAG1--RP11-85F14.5	1	1	STAG1	2296	chr3:136349712:-	RP11-85F14.5	46435	chr3:136577445:-	ONLY_REF_SPLICE	YES	47	14	0.04	0.12	0.0118	0.0118	LOCAL_REARRANGEMENT:-:[89348],STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,RP11-85F14.5->chr3:136560568-136580896:-	SNU475_LIVER	0.04	0.12	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000422
SNU475_LIVER	VCL--ADK	1	1	VCL	1262	chr10:75758133:+	ADK	36629	chr10:76153899:+	ONLY_REF_SPLICE	YES	615	77	0	0.03	0.0118	0.0118	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[31042],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ADK->adenosine_kinase,chr10:75910960-76469061:+	SNU475_LIVER	0	0.03	0.0236	FALSE	0	1	0	1	0	FALSE	ACH-000422
ABC1_LUNG	TIMM23B--LINC00843	121	40	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.5382	0.5085	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ABC1_LUNG	0.99	1	2.0467	TRUE	508	994	45	981	0	FALSE	ACH-000528
ABC1_LUNG	ANXA2--NARG2	98	103	ANXA2	15528	chr15:60674541:-	NARG2	44691	chr15:60742040:-	ONLY_REF_SPLICE	YES	6390	34	0.03	0.86	1.2458	1.3093	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	ABC1_LUNG	0.03	0.86	2.5551	TRUE	0	0	0	1	0	FALSE	ACH-000528
ABC1_LUNG	TIMM23--RP11-464F9.1	82	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	432	4	0.16	0.96	1.0424	0.0381	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ABC1_LUNG	0.16	0.96	1.0805	TRUE	519	3926	326	965	0	FALSE	ACH-000528
ABC1_LUNG	SNX8--MAD1L1	56	3	SNX8	3400	chr7:2353963:-	MAD1L1	61693	chr7:1855864:-	ONLY_REF_SPLICE	YES	23	27	0.72	0.69	0.7119	0.0381	NEIGHBORS[18527],SNX8->chr7:2291405-2393953:-,sorting_nexin_8,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	ABC1_LUNG	0.69	0.72	0.75	FALSE	0	0	0	6	0	FALSE	ACH-000528
ABC1_LUNG	MT-TA--MT-TC	48	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6102	0.0636	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ABC1_LUNG	1	1	0.6738	FALSE	462	80	0	856	0	FALSE	ACH-000528
ABC1_LUNG	RFC2--EIF4H	38	18	RFC2	1174	chr7:73668601:-	EIF4H	22338	chr7:73609071:+	ONLY_REF_SPLICE	YES	178	954	0.24	0.06	0.4831	0.2288	LOCAL_INVERSION:-:+:[34398],RFC2->chr7:73645829-73668774:-,replication_factor_C_subunit_2,EIF4H->chr7:73588575-73611431:+,eukaryotic_translation_initiation_factor_4H	ABC1_LUNG	0.06	0.24	0.7119	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	PRKAR1B--KIAA0895	40	3	PRKAR1B	1441	chr7:766847:-	KIAA0895	35640	chr7:36370688:-	ONLY_REF_SPLICE	YES	0	118	1	0.27	0.5085	0.0381	PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta,KIAA0895->KIAA0895,chr7:36363830-36429734:-	ABC1_LUNG	0.27	1	0.5466	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	TRMT11--NCOA7	24	31	TRMT11	13234	chr6:126342426:+	NCOA7	35995	chr6:126236479:+	ONLY_REF_SPLICE	YES	62	14	0.47	0.8	0.3051	0.3941	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[55310],TRMT11->chr6:126307576-126360422:+,tRNA_methyltransferase_11_homolog,NCOA7->chr6:126102307-126252266:+,nuclear_receptor_coactivator_7	ABC1_LUNG	0.47	0.8	0.6992	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	PRKAR1B--KIAA0895	29	0	PRKAR1B	1061	chr7:767227:-	KIAA0895	35640	chr7:36370688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3686	0	PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta,KIAA0895->KIAA0895,chr7:36363830-36429734:-	ABC1_LUNG	1	1	0.3686	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	NPM1P24--SET	28	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3559	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ABC1_LUNG	1	1	0.3559	TRUE	0	0	0	434	0	FALSE	ACH-000528
ABC1_LUNG	SIPA1L3--SPINT2	20	8	SIPA1L3	1131	chr19:38397998:+	SPINT2	42588	chr19:38774267:+	ONLY_REF_SPLICE	YES	6	5720	0.82	0	0.2542	0.1017	NEIGHBORS[35663],SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2	ABC1_LUNG	0	0.82	0.3559	FALSE	0	1	0	3	0	FALSE	ACH-000528
ABC1_LUNG	MT-ND1--IGF2	15	5	MT-ND1	1513	chrM:3819:+	IGF2	15638	chr11:2153157:-	INCL_NON_REF_SPLICE	YES	9484	9189	0	0	0.1907	0.0636	MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	ABC1_LUNG	0	0	0.2543	FALSE	0	0	0	2	0	FALSE	ACH-000528
ABC1_LUNG	ZNF654--HMGB2	16	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2034	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	ABC1_LUNG	1	1	0.2034	TRUE	0	0	0	518	0	FALSE	ACH-000528
ABC1_LUNG	C15orf57--CBX3	11	18	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	65	36	0.31	0.45	0.1398	0.2288	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	ABC1_LUNG	0.31	0.45	0.3686	TRUE	267	562	48	632	0	FALSE	ACH-000528
ABC1_LUNG	MT-ND1--IGF2	14	4	MT-ND1	1513	chrM:3819:+	IGF2	15879	chr11:2152916:-	INCL_NON_REF_SPLICE	YES	9484	10374	0	0	0.178	0.0508	MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	ABC1_LUNG	0	0	0.2288	FALSE	0	0	0	2	0	FALSE	ACH-000528
ABC1_LUNG	HSPBP1--GRK5	13	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1653	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	ABC1_LUNG	1	1	0.1653	TRUE	1	39	0	134	39	FALSE	ACH-000528
ABC1_LUNG	MT-TA--MT-TC	9	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1144	0.089	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ABC1_LUNG	1	1	0.2034	FALSE	462	80	0	856	0	FALSE	ACH-000528
ABC1_LUNG	MT-ND1--IGF2	9	5	MT-ND1	1513	chrM:3819:+	IGF2	15669	chr11:2153126:-	INCL_NON_REF_SPLICE	YES	9484	9335	0	0	0.1144	0.0636	MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	ABC1_LUNG	0	0	0.178	FALSE	0	0	0	2	0	FALSE	ACH-000528
ABC1_LUNG	MT-ND6--MT-TE	9	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1144	0.0254	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ABC1_LUNG	1	1	0.1398	FALSE	499	1288	110	792	0	FALSE	ACH-000528
ABC1_LUNG	SLC1A5--MT-ND4L	9	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1144	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ABC1_LUNG	1	1	0.1144	FALSE	0	0	0	189	0	FALSE	ACH-000528
ABC1_LUNG	MT-ND6--MT-TE	8	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.1017	0.0254	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ABC1_LUNG	0.91	1	0.1271	FALSE	499	1288	110	792	0	FALSE	ACH-000528
ABC1_LUNG	ANXA2--NARG2	3	17	ANXA2	11842	chr15:60678227:-	NARG2	44691	chr15:60742040:-	ONLY_REF_SPLICE	YES	1610	34	0.01	0.37	0.0381	0.2161	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	ABC1_LUNG	0.01	0.37	0.2542	TRUE	0	0	0	1	0	FALSE	ACH-000528
ABC1_LUNG	MT-ND1--IGF2	7	1	MT-ND1	1227	chrM:3533:+	IGF2	15462	chr11:2153333:-	INCL_NON_REF_SPLICE	YES	7859	5577	0	0	0.089	0.0127	MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	ABC1_LUNG	0	0	0.1017	FALSE	0	0	0	2	0	FALSE	ACH-000528
ABC1_LUNG	ZNF251--RP11-161M6.3	6	5	ZNF251	3735	chr8:145979068:-	RP11-161M6.3	12246	chr16:1047810:-	INCL_NON_REF_SPLICE	YES	49	1	0.18	0.92	0.0763	0.0636	ZNF251->chr8:145946298-145981802:-,zinc_finger_protein_251,RP11-161M6.3->chr16:1041148-1050926:-	ABC1_LUNG	0.18	0.92	0.1399	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	NPM1P24--SET	7	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.089	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ABC1_LUNG	1	1	0.089	TRUE	0	0	0	434	0	FALSE	ACH-000528
ABC1_LUNG	MT-ND6--MT-TE	6	3	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0763	0.0381	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ABC1_LUNG	1	1	0.1144	FALSE	499	1288	110	792	0	FALSE	ACH-000528
ABC1_LUNG	CALM3--MT-ND4L	5	6	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1392	0	0.01	1	0.0636	0.0763	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ABC1_LUNG	0.01	1	0.1399	FALSE	1	1	0	107	0	FALSE	ACH-000528
ABC1_LUNG	DEPDC5--SUZ12	5	5	DEPDC5	26466	chr22:32218776:+	SUZ12	54262	chr17:30267305:+	ONLY_REF_SPLICE	YES	7	151	0.59	0.06	0.0636	0.0636	DEPDC5->DEP_domain_containing_5,chr22:32149944-32303012:+,SUZ12->Oncogene{Bushman},SUZ12_polycomb_repressive_complex_2_subunit,chr17:30264037-30328064:+	ABC1_LUNG	0.06	0.59	0.1272	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0763	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ABC1_LUNG	1	1	0.0763	FALSE	13	9	0	364	0	FALSE	ACH-000528
ABC1_LUNG	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0763	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ABC1_LUNG	1	1	0.0763	FALSE	13	9	0	364	0	FALSE	ACH-000528
ABC1_LUNG	MT-ND1--IGF2	4	8	MT-ND1	1513	chrM:3819:+	IGF2	15484	chr11:2153311:-	INCL_NON_REF_SPLICE	YES	9484	5942	0	0	0.0508	0.1017	MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	ABC1_LUNG	0	0	0.1525	FALSE	0	0	0	2	0	FALSE	ACH-000528
ABC1_LUNG	NDUFA12--FGD6	5	4	NDUFA12	2032	chr12:95396515:-	FGD6	27688	chr12:95507477:-	ONLY_REF_SPLICE	YES	590	37	0.02	0.2	0.0636	0.0508	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[72979],NDUFA12->NADH:ubiquinone_oxidoreductase_subunit_A12,chr12:95290831-95397546:-,FGD6->FYVE,_RhoGEF_and_PH_domain_containing_6,chr12:95470525-95611258:-	ABC1_LUNG	0.02	0.2	0.1144	TRUE	0	0	0	1	0	FALSE	ACH-000528
ABC1_LUNG	RP11-494M8.4--OVCH2	5	4	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0636	0.0508	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	ABC1_LUNG	0.9	1	0.1144	FALSE	32	0	0	22	0	FALSE	ACH-000528
ABC1_LUNG	RP11-96H19.1--RP11-446N19.1	5	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0636	0.0381	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ABC1_LUNG	0.8	1	0.1017	FALSE	407	2205	196	549	0	FALSE	ACH-000528
ABC1_LUNG	MT-ND6--MT-TE	5	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0636	0.0254	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ABC1_LUNG	1	1	0.089	FALSE	499	1288	110	792	0	FALSE	ACH-000528
ABC1_LUNG	LASP1--MT-ND4L	5	1	LASP1	12948	chr17:37075343:+	MT-ND4L	18644	chrM:10485:+	INCL_NON_REF_SPLICE	YES	840	0	0.01	1	0.0636	0.0127	LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ABC1_LUNG	0.01	1	0.0763	FALSE	0	0	0	7	0	FALSE	ACH-000528
ABC1_LUNG	PMS2--ELMO1	5	1	PMS2	7663	chr7:6036957:-	ELMO1	26672	chr7:37382367:-	ONLY_REF_SPLICE	YES	47	0	0.11	1	0.0636	0.0127	PMS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},PMS1_homolog_2,_mismatch_repair_system_component,chr7:6012870-6048756:-,ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1	ABC1_LUNG	0.11	1	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	C15orf57--CBX3	3	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	63	36	0.15	0.23	0.0381	0.1017	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	ABC1_LUNG	0.15	0.23	0.1398	TRUE	267	562	48	632	0	FALSE	ACH-000528
ABC1_LUNG	MT-ND1--IGF2	4	4	MT-ND1	1513	chrM:3819:+	IGF2	15928	chr11:2152867:-	INCL_NON_REF_SPLICE	YES	9484	9756	0	0	0.0508	0.0508	MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	ABC1_LUNG	0	0	0.1016	FALSE	0	0	0	2	0	FALSE	ACH-000528
ABC1_LUNG	MT-ND6--MT-TE	3	8	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0381	0.1017	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ABC1_LUNG	1	1	0.1398	FALSE	499	1288	110	792	0	FALSE	ACH-000528
ABC1_LUNG	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0636	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	ABC1_LUNG	1	1	0.0636	TRUE	22	156	2	142	0	FALSE	ACH-000528
ABC1_LUNG	LRCH1--GRIA3	4	3	LRCH1	1536	chr13:47127838:+	GRIA3	32897	chrX:122319684:+	ONLY_REF_SPLICE	YES	36	0	0.16	1	0.0508	0.0381	LRCH1->chr13:47127303-47327175:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_1,GRIA3->chrX:122318006-122624766:+,glutamate_ionotropic_receptor_AMPA_type_subunit_3	ABC1_LUNG	0.16	1	0.0889	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	MT-ND1--IGF2	4	3	MT-ND1	1513	chrM:3819:+	IGF2	16012	chr11:2152783:-	INCL_NON_REF_SPLICE	NO	9484	9334	0	0	0.0508	0.0381	MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	ABC1_LUNG	0	0	0.0889	FALSE	0	0	0	2	0	FALSE	ACH-000528
ABC1_LUNG	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.75	0.86	0.0508	0.0254	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ABC1_LUNG	0.75	0.86	0.0762	FALSE	515	4851	409	746	0	FALSE	ACH-000528
ABC1_LUNG	MT-ND6--MT-TE	3	5	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0381	0.0636	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ABC1_LUNG	0.89	1	0.1017	FALSE	499	1288	110	792	0	FALSE	ACH-000528
ABC1_LUNG	NR2F2--GNAS	4	1	NR2F2	1415	chr15:96869581:+	GNAS	29055	chr20:57470667:+	ONLY_REF_SPLICE	YES	64	1295	0.07	0	0.0508	0.0127	NR2F2->chr15:96869167-96883492:+,nuclear_receptor_subfamily_2_group_F_member_2,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	ABC1_LUNG	0	0.07	0.0635	FALSE	0	1	0	3	0	FALSE	ACH-000528
ABC1_LUNG	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0508	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ABC1_LUNG	1	1	0.0508	TRUE	0	0	0	434	0	FALSE	ACH-000528
ABC1_LUNG	LRCH1--GRIA3	3	3	LRCH1	1536	chr13:47127838:+	GRIA3	36486	chrX:122387154:+	ONLY_REF_SPLICE	YES	36	0	0.14	1	0.0381	0.0381	LRCH1->chr13:47127303-47327175:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_1,GRIA3->chrX:122318006-122624766:+,glutamate_ionotropic_receptor_AMPA_type_subunit_3	ABC1_LUNG	0.14	1	0.0762	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	MT-ND5--MT-ND6	3	3	MT-ND5	2761	chrM:14097:+	MT-ND6	6169	chrM:14317:-	INCL_NON_REF_SPLICE	YES	0	2354	1	0	0.0381	0.0381	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	ABC1_LUNG	0	1	0.0762	FALSE	26	124	4	93	0	FALSE	ACH-000528
ABC1_LUNG	ANXA2--NARG2	2	6	ANXA2	15528	chr15:60674541:-	NARG2	48568	chr15:60734744:-	ONLY_REF_SPLICE	YES	6390	54	0	0.13	0.0254	0.0763	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	ABC1_LUNG	0	0.13	0.1017	TRUE	0	0	0	1	0	FALSE	ACH-000528
ABC1_LUNG	MGST1--RP11-424M22.3	3	2	MGST1	16905	chr12:16536538:+	RP11-424M22.3	25672	chr12:16726445:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0.0254	NEIGHBORS_OVERLAP:+:+:[6529],MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,RP11-424M22.3->chr12:16720345-16726874:+	ABC1_LUNG	1	1	0.0635	FALSE	0	1	0	6	0	FALSE	ACH-000528
ABC1_LUNG	WSB1--KITLG	3	2	WSB1	1360	chr17:25621461:+	KITLG	29120	chr12:88890958:-	ONLY_REF_SPLICE	YES	144	175	0.03	0.03	0.0381	0.0254	WSB1->WD_repeat_and_SOCS_box_containing_1,chr17:25621102-25640657:+,KITLG->KIT_ligand,Oncogene{Bushman},chr12:88886570-88974628:-	ABC1_LUNG	0.03	0.03	0.0635	TRUE	0	0	0	1	0	FALSE	ACH-000528
ABC1_LUNG	MT-ND1--IGF2	3	1	MT-ND1	1266	chrM:3572:+	IGF2	17033	chr11:2151762:-	INCL_NON_REF_SPLICE	YES	8182	2459	0	0	0.0381	0.0127	MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	ABC1_LUNG	0	0	0.0508	FALSE	0	0	0	1	0	FALSE	ACH-000528
ABC1_LUNG	ANXA2--NARG2	3	0	ANXA2	11842	chr15:60678227:-	NARG2	48568	chr15:60734744:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	ABC1_LUNG	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	NPM1P24--SET	3	0	NPM1P24	1533	chr10:74677760:-	SET	12307	chr9:131456202:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0381	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ABC1_LUNG	1	1	0.0381	TRUE	0	0	0	434	0	FALSE	ACH-000528
ABC1_LUNG	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ABC1_LUNG	1	1	0.0381	FALSE	292	1546	117	613	0	FALSE	ACH-000528
ABC1_LUNG	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0254	0.0508	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ABC1_LUNG	0.86	1	0.0762	FALSE	467	2173	244	435	0	FALSE	ACH-000528
ABC1_LUNG	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	23	0	0.15	1	0.0254	0.0254	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ABC1_LUNG	0.15	1	0.0508	FALSE	164	806	69	479	0	FALSE	ACH-000528
ABC1_LUNG	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0127	0.0636	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ABC1_LUNG	1	1	0.0763	FALSE	192	492	57	212	0	FALSE	ACH-000528
ABC1_LUNG	SF1--FUS	2	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	467	1102	0.01	0	0.0254	0.0127	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	ABC1_LUNG	0	0.01	0.0381	FALSE	5	20	0	32	0	FALSE	ACH-000528
ABC1_LUNG	ANKMY2--BZW2	2	0	ANKMY2	1311	chr7:16685132:-	BZW2	20547	chr7:16705062:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:-:+:[314],ANKMY2->ankyrin_repeat_and_MYND_domain_containing_2,chr7:16639401-16685442:-,BZW2->basic_leucine_zipper_and_W2_domains_2,chr7:16685756-16746148:+	ABC1_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ABC1_LUNG	1	1	0.0254	FALSE	125	705	46	456	0	FALSE	ACH-000528
ABC1_LUNG	SLC25A22--POLR2L	2	0	SLC25A22	1100	chr11:798217:-	POLR2L	12725	chr11:840480:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_REARRANGEMENT:-:[39040],SLC25A22->chr11:790475-798316:-,solute_carrier_family_25_member_22,POLR2L->chr11:837356-842545:-,polymerase_(RNA)_II_subunit_L	ABC1_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	ZMYND11--LARP4B	2	0	ZMYND11	2095	chr10:181499:+	LARP4B	27663	chr10:931700:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11,LARP4B->La_ribonucleoprotein_domain_family_member_4B,chr10:855484-977564:-	ABC1_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	ZC3H3--EEF1D	1	2	ZC3H3	4593	chr8:144618427:-	EEF1D	28609	chr8:144669022:-	ONLY_REF_SPLICE	YES	48	394	0.06	0.01	0.0127	0.0254	GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[38244],ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	ABC1_LUNG	0.01	0.06	0.0381	FALSE	3	0	0	4	0	FALSE	ACH-000528
ABC1_LUNG	DAPK1--CTSL	1	1	DAPK1	2912	chr9:90114054:+	CTSL	38596	chr9:90342509:+	ONLY_REF_SPLICE	YES	151	667	0.01	0	0.0127	0.0127	NEIGHBORS[16886],DAPK1->Oncogene{Bushman},chr9:90112143-90323548:+,death_associated_protein_kinase_1,CTSL->cathepsin_L,chr9:90340434-90346308:+	ABC1_LUNG	0	0.01	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000528
ABC1_LUNG	FNDC3B--PLD1	1	1	FNDC3B	4171	chr3:171830380:+	PLD1	49603	chr3:171507325:-	ONLY_REF_SPLICE	YES	559	16	0	0.11	0.0127	0.0127	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Coronary=1,Esophagus_-_Mucosa=1},FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,PLD1->Oncogene{Bushman},chr3:171318195-171528740:-,phospholipase_D1	ABC1_LUNG	0	0.11	0.0254	FALSE	0	0	0	2	0	FALSE	ACH-000528
ABC1_LUNG	FNDC3B--PLD1	1	1	FNDC3B	4171	chr3:171830380:+	PLD1	70454	chr3:171395484:-	ONLY_REF_SPLICE	YES	559	19	0	0.1	0.0127	0.0127	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Coronary=1,Esophagus_-_Mucosa=1},FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,PLD1->Oncogene{Bushman},chr3:171318195-171528740:-,phospholipase_D1	ABC1_LUNG	0	0.1	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000528
ABC1_LUNG	GAB2--NARS2	1	1	GAB2	2791	chr11:78075062:-	NARS2	33062	chr11:78189729:-	ONLY_REF_SPLICE	YES	32	67	0.06	0.03	0.0127	0.0127	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[17613],GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	ABC1_LUNG	0.03	0.06	0.0254	TRUE	0	0	0	1	0	FALSE	ACH-000528
ABC1_LUNG	GLRB--PDGFC	1	1	GLRB	6901	chr4:158043549:+	PDGFC	21763	chr4:157782641:-	ONLY_REF_SPLICE	YES	70	379	0.03	0.01	0.0127	0.0127	GLRB->chr4:157997209-158093242:+,glycine_receptor_beta,PDGFC->chr4:157681606-157892546:-,platelet_derived_growth_factor_C	ABC1_LUNG	0.01	0.03	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000528
ABC1_LUNG	MED15--ZBTB18	1	1	MED15	16866	chr22:20922918:+	ZBTB18	30316	chr1:244217090:+	ONLY_REF_SPLICE	YES	194	0	0.01	1	0.0127	0.0127	MED15->chr22:20850200-20941919:+,mediator_complex_subunit_15,ZBTB18->chr1:244214585-244220778:+,zinc_finger_and_BTB_domain_containing_18	ABC1_LUNG	0.01	1	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000528
ABC1_LUNG	RP11-494M8.4--OVCH2	1	1	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0127	0.0127	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	ABC1_LUNG	0.4	1	0.0254	FALSE	60	13	8	23	0	FALSE	ACH-000528
ABC1_LUNG	RUFY1--EIF3D	1	1	RUFY1	8634	chr5:179004137:+	EIF3D	41843	chr22:36907833:-	ONLY_REF_SPLICE	YES	60	361	0.03	0.01	0.0127	0.0127	RUFY1->RUN_and_FYVE_domain_containing_1,chr5:178977559-179037027:+,EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D	ABC1_LUNG	0.01	0.03	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000528
ABC1_LUNG	SDK1--GRB10	1	1	SDK1	1437	chr7:3341516:+	GRB10	80394	chr7:50771605:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0127	0.0127	SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1,GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10	ABC1_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000528
ABC1_LUNG	SPIDR--RP11-401H2.1	1	1	SPIDR	16312	chr8:48353104:+	RP11-401H2.1	40992	chr8:52233280:+	ONLY_REF_SPLICE	YES	52	0	0.04	1	0.0127	0.0127	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,RP11-401H2.1->chr8:52170248-52233678:+	ABC1_LUNG	0.04	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000528
LS411N_LARGE_INTESTINE	TIMM23B--LINC00843	122	43	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4014	0.494	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LS411N_LARGE_INTESTINE	1	1	1.8954	TRUE	508	994	45	981	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	TIMM23--RP11-464F9.1	74	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	298	9	0.21	0.9	0.8501	0.0345	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LS411N_LARGE_INTESTINE	0.21	0.9	0.8846	TRUE	519	3926	326	965	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	CPT2--RP11-1143G9.4	66	0	CPT2	8129	chr1:53679597:+	RP11-1143G9.4	12119	chr12:69747288:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7582	0	GTEx_FI:{Salivary_Gland=[count:7=pct:17.9]},CPT2->carnitine_palmitoyltransferase_2,chr1:53662101-53679869:+,RP11-1143G9.4->chr12:69747273-69748005:-	LS411N_LARGE_INTESTINE	1	1	0.7582	TRUE	7	0	0	2	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND6--MT-ND5	61	1	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1730	1	0.03	0.7007	0.0115	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	LS411N_LARGE_INTESTINE	0.03	1	0.7122	FALSE	101	855	57	72	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	EEF1A1--MT-CO3	58	12	EEF1A1	5859	chr6:74228116:-	MT-CO3	11502	chrM:9206:+	INCL_NON_REF_SPLICE	YES	18141	0	0	1	0.6663	0.1378	EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	LS411N_LARGE_INTESTINE	0	1	0.8041	FALSE	0	0	0	1	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-TA--MT-TC	56	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6433	0.0689	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS411N_LARGE_INTESTINE	1	1	0.7122	FALSE	462	80	0	856	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	TNS3--CDK14	27	17	TNS3	18775	chr7:47454692:-	CDK14	64739	chr7:90492490:+	ONLY_REF_SPLICE	YES	37	0	0.54	1	0.3102	0.1953	TNS3->chr7:47314752-47622156:-,tensin_3,CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14	LS411N_LARGE_INTESTINE	0.54	1	0.5055	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	14	64	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	7169	0	0.01	1	0.1608	0.7352	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.01	1	0.896	FALSE	344	827	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	85	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	40	0	0.69	1	0.0574	0.9764	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.69	1	1.0338	FALSE	344	826	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	25	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2872	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	1	1	0.2872	FALSE	230	193	14	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	9	62	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	20	0	0.78	1	0.1034	0.7122	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.78	1	0.8156	FALSE	344	821	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND6--MT-TE	24	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.2757	0.0115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS411N_LARGE_INTESTINE	0.93	1	0.2872	FALSE	499	1288	110	792	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	84	MT-ND4	1148	chrM:10907:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	NO	38	0	0.7	1	0.0345	0.9649	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.7	1	0.9994	FALSE	344	826	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND5--MT-ATP8	20	14	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5	0	0.87	1	0.2297	0.1608	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0.87	1	0.3905	FALSE	43	37	8	105	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	NFAT5--SNTB2	20	14	NFAT5	3335	chr16:69602451:+	SNTB2	38132	chr16:69293953:+	ONLY_REF_SPLICE	YES	11	39	0.76	0.47	0.2297	0.1608	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,SNTB2->chr16:69221032-69342955:+,syntrophin_beta_2	LS411N_LARGE_INTESTINE	0.47	0.76	0.3905	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	69	MT-ND4	1192	chrM:10951:+	MT-ND4L	5600	chrM:10691:+	INCL_NON_REF_SPLICE	YES	51	0	0.59	1	0.0345	0.7926	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.59	1	0.8271	FALSE	344	826	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	15	18	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	4	0	0.89	1	0.1723	0.2068	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	LS411N_LARGE_INTESTINE	0.89	1	0.3791	FALSE	81	155	12	160	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	ZNF654--HMGB2	19	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2183	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LS411N_LARGE_INTESTINE	1	1	0.2183	TRUE	0	0	0	518	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-TA--MT-TC	17	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1953	0.0689	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS411N_LARGE_INTESTINE	1	1	0.2642	FALSE	462	80	0	856	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	LSM14A--RBBP7	18	0	LSM14A	2296	chr19:34685418:+	RBBP7	24373	chrX:16870986:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2068	0	LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+,RBBP7->Oncogene{Bushman},chrX:16857406-16888537:-,retinoblastoma_binding_protein_7	LS411N_LARGE_INTESTINE	1	1	0.2068	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND6--MT-ND5	17	1	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	1701	1	0.01	0.1953	0.0115	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	LS411N_LARGE_INTESTINE	0.01	1	0.2068	FALSE	101	855	57	72	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND6--MT-TE	16	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.1838	0.0574	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS411N_LARGE_INTESTINE	0.91	1	0.2412	FALSE	499	1288	110	792	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	CPT2--RP11-1143G9.4	16	0	CPT2	8127	chr1:53679595:+	RP11-1143G9.4	12120	chr12:69747287:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1838	0	GTEx_FI:{Salivary_Gland=[count:7=pct:17.9]},CPT2->carnitine_palmitoyltransferase_2,chr1:53662101-53679869:+,RP11-1143G9.4->chr12:69747273-69748005:-	LS411N_LARGE_INTESTINE	1	1	0.1838	TRUE	7	0	0	2	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND5--MT-ATP8	13	9	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4043	7	0.01	0.76	0.1493	0.1034	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0.01	0.76	0.2527	FALSE	43	37	8	105	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	CPT2--RP11-1143G9.4	15	0	CPT2	8130	chr1:53679598:+	RP11-1143G9.4	12119	chr12:69747288:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1723	0	GTEx_FI:{Salivary_Gland=[count:7=pct:17.9]},CPT2->carnitine_palmitoyltransferase_2,chr1:53662101-53679869:+,RP11-1143G9.4->chr12:69747273-69748005:-	LS411N_LARGE_INTESTINE	1	1	0.1723	TRUE	7	0	0	2	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	NFAT5--SNTB2	13	8	NFAT5	2281	chr16:69600277:+	SNTB2	38132	chr16:69293953:+	ONLY_REF_SPLICE	YES	10	39	0.68	0.35	0.1493	0.0919	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,SNTB2->chr16:69221032-69342955:+,syntrophin_beta_2	LS411N_LARGE_INTESTINE	0.35	0.68	0.2412	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	14	1	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	18717	0	0	1	0.1608	0.0115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	1	0.1723	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	9	18	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	13427	1	0	0.96	0.1034	0.2068	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0	0.96	0.3102	FALSE	328	800	43	304	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND5--MT-ATP8	9	15	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1034	0.1723	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	1	1	0.2757	FALSE	43	37	8	105	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	ZNF148--SNX4	10	11	ZNF148	13531	chr3:124996570:-	SNX4	30443	chr3:125208307:-	ONLY_REF_SPLICE	YES	60	89	0.26	0.19	0.1149	0.1264	LOCAL_REARRANGEMENT:-:[71297],ZNF148->chr3:124944405-125094198:-,zinc_finger_protein_148,SNX4->chr3:125165495-125239041:-,sorting_nexin_4	LS411N_LARGE_INTESTINE	0.19	0.26	0.2413	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	11	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17280	7	0	0.68	0.1264	0.0459	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	0.68	0.1723	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	11	4	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	72	0	0.17	1	0.1264	0.0459	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.17	1	0.1723	FALSE	344	827	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	ZNRF3--HSCB	10	6	ZNRF3	3718	chr22:29383189:+	HSCB	21101	chr22:29139870:+	ONLY_REF_SPLICE	YES	58	76	0.22	0.17	0.1149	0.0689	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,HSCB->HscB_mitochondrial_iron-sulfur_cluster_co-chaperone,chr22:29138019-29153503:+	LS411N_LARGE_INTESTINE	0.17	0.22	0.1838	TRUE	0	1	0	1	1	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	11	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1264	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	1	1	0.1264	FALSE	230	198	14	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND5--MT-ATP8	9	8	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5088	63	0	0.21	0.1034	0.0919	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	0.21	0.1953	FALSE	43	37	8	105	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	8	11	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9322	1	0	0.95	0.0919	0.1264	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0	0.95	0.2183	FALSE	344	827	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	29	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	20	0	0.62	1	0.0345	0.3331	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.62	1	0.3676	FALSE	344	821	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-TA--MT-TC	10	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1149	0.0115	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS411N_LARGE_INTESTINE	1	1	0.1264	FALSE	462	80	0	856	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND3--MT-ATP8	10	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1149	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	1	1	0.1149	FALSE	351	233	23	137	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	27	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.0345	0.3102	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.88	1	0.3447	FALSE	344	821	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	FGGY--AGAP1	8	5	FGGY	11192	chr1:59844509:+	AGAP1	58570	chr2:236945205:+	ONLY_REF_SPLICE	YES	29	42	0.31	0.24	0.0919	0.0574	FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+,AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+	LS411N_LARGE_INTESTINE	0.24	0.31	0.1493	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3987	0	0	1	0.1034	0.0115	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LS411N_LARGE_INTESTINE	0	1	0.1149	FALSE	13	9	0	364	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND6--MT-TE	9	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.1034	0.0115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS411N_LARGE_INTESTINE	0.83	1	0.1149	FALSE	499	1288	110	792	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	SAMD5--SASH1	9	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	4	3	0.71	0.77	0.1034	0.0115	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	LS411N_LARGE_INTESTINE	0.71	0.77	0.1149	TRUE	53	396	64	110	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	8	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15919	63	0	0.19	0.0804	0.0919	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	0.19	0.1723	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1034	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	1	1	0.1034	FALSE	230	198	14	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	ZNRF3--HSCB	8	3	ZNRF3	3718	chr22:29383189:+	HSCB	24228	chr22:29147229:+	ONLY_REF_SPLICE	YES	58	51	0.16	0.18	0.0919	0.0345	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,HSCB->HscB_mitochondrial_iron-sulfur_cluster_co-chaperone,chr22:29138019-29153503:+	LS411N_LARGE_INTESTINE	0.16	0.18	0.1264	TRUE	0	1	0	1	1	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	FAM211A--MT-CO3	7	6	FAM211A	8450	chr17:16344949:-	MT-CO3	11714	chrM:9412:+	INCL_NON_REF_SPLICE	YES	4	13775	0.76	0	0.0804	0.0689	FAM211A->chr17:16344891-16395467:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	LS411N_LARGE_INTESTINE	0	0.76	0.1493	FALSE	0	0	0	7	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	17	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	52	1	0.29	0.95	0.0459	0.1953	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.29	0.95	0.2412	FALSE	344	826	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND6--MT-ND5	8	1	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	2901	1	0	0.0919	0.0115	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	LS411N_LARGE_INTESTINE	0	1	0.1034	FALSE	101	855	57	72	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	PFKL--MT-ND4L	8	1	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	368	0	0.02	1	0.0919	0.0115	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.02	1	0.1034	FALSE	0	0	0	33	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND6--MT-ND5	8	0	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0919	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	LS411N_LARGE_INTESTINE	1	1	0.0919	FALSE	101	855	57	72	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-TA--MT-TC	6	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0.0919	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS411N_LARGE_INTESTINE	1	1	0.1608	FALSE	462	80	0	856	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	19	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0345	0.2183	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.88	1	0.2528	FALSE	344	821	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	11	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	45	1	0.26	0.94	0.0574	0.1264	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.26	0.94	0.1838	FALSE	344	826	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	10	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	NO	51	1	0.23	0.94	0.0574	0.1149	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.23	0.94	0.1723	FALSE	344	826	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	HSP90AB1--MT-RNR2	7	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4000	0	0	1	0.0804	0.0115	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LS411N_LARGE_INTESTINE	0	1	0.0919	FALSE	13	9	0	364	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	5	MT-ND4	1544	chrM:11303:+	MT-ATP8	5455	chrM:8442:+	INCL_NON_REF_SPLICE	YES	20469	0	0	1	0.0689	0.0574	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	1	0.1263	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	0	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0804	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	1	1	0.0804	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0804	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	1	1	0.0804	FALSE	231	205	14	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0804	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	1	1	0.0804	FALSE	231	204	14	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	RP11-680G10.1--GSE1	7	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0804	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LS411N_LARGE_INTESTINE	1	1	0.0804	TRUE	465	1949	224	605	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18512	0	0	1	0.0689	0.0345	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	1	0.1034	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	11	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	43	1	0.26	0.94	0.0459	0.1264	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.26	0.94	0.1723	FALSE	344	826	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND6--MT-TE	6	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0689	0.0345	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS411N_LARGE_INTESTINE	0.82	1	0.1034	FALSE	499	1288	110	792	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	3	13	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	4	1	0.8	0.94	0.0345	0.1493	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	LS411N_LARGE_INTESTINE	0.8	0.94	0.1838	FALSE	81	155	12	160	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	AL136376.1--RPS28	6	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	LS411N_LARGE_INTESTINE	1	1	0.0689	TRUE	0	0	0	12	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	12	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	15432	0	0	1	0.0345	0.1378	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	1	0.1723	FALSE	231	215	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	8	MT-ND4	1774	chrM:11533:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	17332	0	0	1	0.0459	0.0919	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	1	0.1378	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	4	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	52	0	0.15	1	0.0574	0.0459	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.15	1	0.1033	FALSE	344	826	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	3	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	16831	856	0	0.01	0.0574	0.0345	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	0.01	0.0919	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	11	MT-ND4	2176	chrM:11935:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	8158	0	0	1	0.0345	0.1264	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	1	0.1609	FALSE	231	215	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	11	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	66	1	0.17	0.93	0.0345	0.1264	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.17	0.93	0.1609	FALSE	344	827	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	11	MT-ND5	2800	chrM:14136:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	549	1	0.02	0.0345	0.1264	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0.02	1	0.1609	FALSE	43	37	8	105	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	10	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17070	0	0	1	0.0345	0.1149	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	1	0.1494	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	16196	1955	0	0	0.0574	0.023	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	0	0.0804	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	10	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	16138	0	0	1	0.0345	0.1149	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	1	0.1494	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	10	MT-ND4	1195	chrM:10954:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	52	1	0.2	0.93	0.0345	0.1149	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.2	0.93	0.1494	FALSE	344	826	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	10	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	18	0	0.42	1	0.0345	0.1149	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.42	1	0.1494	FALSE	344	821	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	9	MT-ND4	2335	chrM:12094:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	63	1	0.16	0.0345	0.1034	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0.16	1	0.1379	FALSE	209	205	15	279	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	GPHN--RP11-783L4.1	5	0	GPHN	2185	chr14:66975309:+	RP11-783L4.1	42058	chr14:66590379:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0574	0	GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,RP11-783L4.1->chr14:66578299-66592565:+	LS411N_LARGE_INTESTINE	1	1	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	HSPBP1--GRK5	5	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	LS411N_LARGE_INTESTINE	1	1	0.0574	TRUE	1	39	0	134	39	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	8	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15308	63	0	0.15	0.0345	0.0919	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	0.15	0.1264	FALSE	231	215	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	18512	0	0	1	0.0459	0.0459	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	1	0.0918	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	0	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	1	1	0.0574	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	4	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	72	0	0.1	1	0.0459	0.0459	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	0.1	1	0.0918	FALSE	344	827	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	DAGLA--RP11-286N22.10	4	3	DAGLA	1072	chr11:61447976:+	RP11-286N22.10	24589	chr11:61267235:+	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0459	0.0345	DAGLA->chr11:61447905-61514473:+,diacylglycerol_lipase_alpha,RP11-286N22.10->chr11:61263912-61267548:+	LS411N_LARGE_INTESTINE	0.64	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	7	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	17053	0	0	1	0.0345	0.0804	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	1	0.1149	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-TA--MT-TC	3	7	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0.0804	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS411N_LARGE_INTESTINE	1	1	0.1149	FALSE	462	80	0	856	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	FADS2--TMEM216	4	2	FADS2	1049	chr11:61560500:+	TMEM216	31282	chr11:61165246:+	ONLY_REF_SPLICE	YES	1	130	0.86	0.04	0.0459	0.023	FADS2->chr11:61560452-61634826:+,fatty_acid_desaturase_2,TMEM216->chr11:61159159-61166335:+,transmembrane_protein_216	LS411N_LARGE_INTESTINE	0.04	0.86	0.0689	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND6--MT-TE	3	6	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0345	0.0689	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS411N_LARGE_INTESTINE	0.82	1	0.1034	FALSE	499	1288	110	792	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	NRIP1--AF127936.7	4	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0459	0.023	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LS411N_LARGE_INTESTINE	0.67	1	0.0689	FALSE	292	1546	117	613	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0.0689	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LS411N_LARGE_INTESTINE	1	1	0.1034	FALSE	515	4851	409	746	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	FAR2--OVCH1	4	1	FAR2	16797	chr12:29474857:+	OVCH1	52926	chr12:29576231:-	ONLY_REF_SPLICE	YES	68	0	0.07	1	0.0459	0.0115	LOCAL_INVERSION:+:-:[71494],FAR2->chr12:29302036-29493913:+,fatty_acyl-CoA_reductase_2,OVCH1->chr12:29565407-29650619:-,ovochymase_1	LS411N_LARGE_INTESTINE	0.07	1	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	5	MT-ND4	1903	chrM:11662:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	16915	199	0	0.04	0.0345	0.0574	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	0.04	0.0919	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	CPT2--RP11-1143G9.4	4	0	CPT2	8131	chr1:53679599:+	RP11-1143G9.4	12119	chr12:69747288:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	GTEx_FI:{Salivary_Gland=[count:7=pct:17.9]},CPT2->carnitine_palmitoyltransferase_2,chr1:53662101-53679869:+,RP11-1143G9.4->chr12:69747273-69748005:-	LS411N_LARGE_INTESTINE	1	1	0.0459	TRUE	7	0	0	2	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	4	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	19080	0	0	1	0.0345	0.0459	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	1	0.0804	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	1	1	0.0459	FALSE	344	821	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND6--MT-ND5	4	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	LS411N_LARGE_INTESTINE	1	1	0.0459	FALSE	101	855	57	72	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	18229	0	0	1	0.0345	0.0345	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	1	0.069	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	18229	0	0	1	0.0345	0.0345	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	0	1	0.069	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0.0115	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS411N_LARGE_INTESTINE	1	1	0.046	FALSE	344	821	44	306	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND5--MT-CO2	3	1	MT-ND5	1715	chrM:13051:+	MT-CO2	5868	chrM:7641:+	INCL_NON_REF_SPLICE	YES	3581	0	0	1	0.0345	0.0115	LOCAL_REARRANGEMENT:+:[4068],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	LS411N_LARGE_INTESTINE	0	1	0.046	FALSE	10	4	0	10	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND6--MT-ND5	3	1	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	NO	9	1693	0.31	0	0.0345	0.0115	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	LS411N_LARGE_INTESTINE	0	0.31	0.046	FALSE	101	855	57	72	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND6--MT-ND5	3	1	MT-ND6	1463	chrM:14211:-	MT-ND5	6283	chrM:14094:+	INCL_NON_REF_SPLICE	YES	4	1732	0.5	0	0.0345	0.0115	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	LS411N_LARGE_INTESTINE	0	0.5	0.046	FALSE	101	855	57	72	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	NFAT5--SNTB2	2	5	NFAT5	2281	chr16:69600277:+	SNTB2	38253	chr16:69294074:+	ONLY_REF_SPLICE	YES	10	33	0.41	0.17	0.023	0.0574	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,SNTB2->chr16:69221032-69342955:+,syntrophin_beta_2	LS411N_LARGE_INTESTINE	0.17	0.41	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1452	chrM:11211:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	1	1	0.0345	FALSE	231	217	16	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	1	1	0.0345	FALSE	230	193	14	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	1	1	0.0345	FALSE	230	191	14	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1003	chrM:10762:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	1	1	0.0345	FALSE	230	189	14	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS411N_LARGE_INTESTINE	1	1	0.0345	FALSE	230	193	14	283	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS411N_LARGE_INTESTINE	1	1	0.0345	FALSE	499	1288	110	792	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS411N_LARGE_INTESTINE	1	1	0.0345	FALSE	499	1288	110	792	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	RP11-123O10.4--GRIP1	3	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LS411N_LARGE_INTESTINE	1	1	0.0345	FALSE	416	2512	207	587	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0.0689	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LS411N_LARGE_INTESTINE	1	1	0.0804	FALSE	407	2205	196	549	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0.0689	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LS411N_LARGE_INTESTINE	1	1	0.0804	FALSE	467	2173	244	435	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	FGGY--AGAP1	1	5	FGGY	11192	chr1:59844509:+	AGAP1	57495	chr2:236923449:+	ONLY_REF_SPLICE	YES	29	50	0.17	0.11	0.0115	0.0574	FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+,AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+	LS411N_LARGE_INTESTINE	0.11	0.17	0.0689	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	MKI67--DOCK1	2	1	MKI67	1810	chr10:129923840:-	DOCK1	27873	chr10:128768966:+	ONLY_REF_SPLICE	YES	125	27	0.02	0.1	0.023	0.0115	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67,DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1	LS411N_LARGE_INTESTINE	0.02	0.1	0.0345	TRUE	0	0	0	1	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	NFAT5--SNTB2	1	5	NFAT5	3335	chr16:69602451:+	SNTB2	38253	chr16:69294074:+	ONLY_REF_SPLICE	YES	11	33	0.35	0.15	0.0115	0.0574	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,SNTB2->chr16:69221032-69342955:+,syntrophin_beta_2	LS411N_LARGE_INTESTINE	0.15	0.35	0.0689	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	ZNF148--SNX4	1	5	ZNF148	13531	chr3:124996570:-	SNX4	31499	chr3:125199163:-	ONLY_REF_SPLICE	YES	60	100	0.09	0.06	0.0115	0.0574	LOCAL_REARRANGEMENT:-:[71297],ZNF148->chr3:124944405-125094198:-,zinc_finger_protein_148,SNX4->chr3:125165495-125239041:-,sorting_nexin_4	LS411N_LARGE_INTESTINE	0.06	0.09	0.0689	TRUE	0	0	0	1	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	C11orf68--ADRBK1	2	0	C11orf68	1208	chr11:65686381:-	ADRBK1	10597	chr11:67046671:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,ADRBK1->adrenergic,_beta,_receptor_kinase_1,chr11:67033881-67054027:+	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	CDYL--ZNF638	2	0	CDYL	6988	chr6:4777041:+	ZNF638	66475	chr2:71658457:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	CDYL->chr6:4706393-4955785:+,chromodomain_protein,_Y-like,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	CPSF6--SRSF1	2	0	CPSF6	11046	chr12:69656342:+	SRSF1	22199	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	2	7	0	12	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	DEPDC1B--RYK	2	0	DEPDC1B	4088	chr5:59982789:-	RYK	27249	chr3:133914026:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,RYK->chr3:133784147-133969689:-,receptor-like_tyrosine_kinase	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	DNAJC24--IMMP1L	2	0	DNAJC24	2020	chr11:31392406:+	IMMP1L	34941	chr11:31455117:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Nerve_-_Tibial=2,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Pancreas=1},LOCAL_INVERSION:+:-:[552],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	4	0	9	1	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	FAM211A--XKRX	2	0	FAM211A	1409	chr17:16395059:-	XKRX	15242	chrX:100170072:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	FAM211A->chr17:16344891-16395467:-,XKRX->XK_related,_X-linked,chrX:100168431-100184422:-	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	PDS5B--GPALPP1	2	0	PDS5B	1167	chr13:33160730:+	GPALPP1	50713	chr13:45578440:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,GPALPP1->GPALPP_motifs_containing_1,chr13:45563687-45607746:+	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	RP5-940J5.9--CYSTM1	2	0	RP5-940J5.9	1230	chr12:6647307:-	CYSTM1	6222	chr5:139574031:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	RP5-940J5.9->chr12:6646960-6647536:-,CYSTM1->chr5:139554227-139661637:+,cysteine_rich_transmembrane_module_containing_1	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	RPRD1A--PDE3B	2	0	RPRD1A	10586	chr18:33606863:-	PDE3B	34720	chr11:14810652:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,PDE3B->chr11:14665269-14892350:+,phosphodiesterase_3B	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	SFXN4--NUP62CL	2	0	SFXN4	3607	chr10:120921852:-	NUP62CL	21456	chrX:106396733:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	SFXN4->chr10:120900279-120925179:-,sideroflexin_4,NUP62CL->chrX:106366657-106449670:-,nucleoporin_62kDa_C-terminal_like	LS411N_LARGE_INTESTINE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000985
LS411N_LARGE_INTESTINE	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	14	0	0.22	1	0.0115	0.0345	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LS411N_LARGE_INTESTINE	0.22	1	0.046	FALSE	164	806	69	479	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	NRIP1--AF127936.7	1	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.33	1	0.0115	0.0345	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LS411N_LARGE_INTESTINE	0.33	1	0.046	FALSE	125	705	46	456	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	278	181	0.01	0.01	0.0115	0.0115	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	LS411N_LARGE_INTESTINE	0.01	0.01	0.023	FALSE	16	22	0	27	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	C17orf76-AS1--SEPT9	1	1	C17orf76-AS1	1593	chr17:16342728:+	SEPT9	45890	chr17:75483506:+	ONLY_REF_SPLICE	NO	213	193	0.01	0.01	0.0115	0.0115	C17orf76-AS1->chr17:16342136-16381992:+,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	LS411N_LARGE_INTESTINE	0.01	0.01	0.023	FALSE	0	3	0	6	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	DSCR3--TTC3	1	1	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	30	55	0.06	0.04	0.0115	0.0115	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	LS411N_LARGE_INTESTINE	0.04	0.06	0.023	TRUE	0	9	0	44	1	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	NPNT--PPA2	1	1	NPNT	3050	chr4:106819158:+	PPA2	38003	chr4:106320321:-	ONLY_REF_SPLICE	NO	32	519	0.06	0	0.0115	0.0115	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Thyroid=5,Artery_-_Tibial=2,Artery_-_Aorta=2,Lung=1},NPNT->chr4:106815932-106925184:+,nephronectin,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	LS411N_LARGE_INTESTINE	0	0.06	0.023	FALSE	1	5	1	3	1	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	PNISR--SET	1	1	PNISR	11871	chr6:99852479:-	SET	26083	chr9:131453449:+	ONLY_REF_SPLICE	YES	250	514	0.01	0	0.0115	0.0115	PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LS411N_LARGE_INTESTINE	0	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	PROSC--DAP3	1	1	PROSC	2996	chr8:37623873:+	DAP3	27888	chr1:155708400:+	ONLY_REF_SPLICE	YES	270	12	0.01	0.14	0.0115	0.0115	GTEx_FI:{Muscle=[count:1=pct:0.4],Vagina=[count:1=pct:1.8]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Vagina=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),DAP3->chr1:155657751-155708801:+,death_associated_protein_3	LS411N_LARGE_INTESTINE	0.01	0.14	0.023	FALSE	2	0	0	4	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	6	1	0.25	0.0115	0.0115	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LS411N_LARGE_INTESTINE	0.25	1	0.023	TRUE	458	1351	185	561	0	FALSE	ACH-000985
LS411N_LARGE_INTESTINE	SNHG5--FAM192A	1	1	SNHG5	1780	chr6:86387672:-	FAM192A	15198	chr16:57207781:-	ONLY_REF_SPLICE	YES	2505	107	0	0.02	0.0115	0.0115	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	LS411N_LARGE_INTESTINE	0	0.02	0.023	FALSE	0	1	0	1	0	FALSE	ACH-000985
CW2_LARGE_INTESTINE	MT-TA--MT-TN	129	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2489	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CW2_LARGE_INTESTINE	1	1	1.2489	FALSE	369	2501	205	193	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	RPP14--CA12	90	0	RPP14	10601	chr3:58306868:+	CA12	32006	chr15:63616878:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8713	0	RPP14->chr3:58291974-58310422:+,chr3:58303341-58303847:+,ribonuclease_P/MRP_subunit_p14,CA12->carbonic_anhydrase_12,chr15:63613577-63674360:-	CW2_LARGE_INTESTINE	1	1	0.8713	TRUE	0	0	0	1	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	TIMM23B--LINC00843	77	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7455	0.1646	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CW2_LARGE_INTESTINE	0.99	1	0.9101	TRUE	508	994	45	981	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-TA--MT-TC	69	12	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.668	0.1162	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CW2_LARGE_INTESTINE	1	1	0.7842	FALSE	462	80	0	856	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	PSMB10--LCAT	55	51	PSMB10	3519	chr16:67968472:-	LCAT	10240	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5325	0.4938	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	CW2_LARGE_INTESTINE	1	1	1.0263	TRUE	0	0	0	2	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	PSMB10--LCAT	56	32	PSMB10	3291	chr16:67968700:-	LCAT	10240	chr16:67974381:-	ONLY_REF_SPLICE	YES	143	0	0.38	1	0.5422	0.3098	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	CW2_LARGE_INTESTINE	0.38	1	0.852	TRUE	0	0	0	2	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	TIMM23--RP11-464F9.1	46	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	179	0	0.21	1	0.4453	0.0194	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CW2_LARGE_INTESTINE	0.21	1	0.4647	TRUE	519	3926	326	965	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-TA--MT-TN	18	73	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1743	0.7067	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CW2_LARGE_INTESTINE	1	1	0.881	FALSE	369	2501	205	193	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-ND6--MT-TE	30	8	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2904	0.0775	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CW2_LARGE_INTESTINE	1	1	0.3679	FALSE	499	1288	110	792	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	PSMB10--LCAT	16	57	PSMB10	3519	chr16:67968472:-	LCAT	9887	chr16:67974734:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1549	0.5518	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	CW2_LARGE_INTESTINE	1	1	0.7067	TRUE	0	0	0	2	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	PSMB10--LCAT	14	51	PSMB10	3524	chr16:67968467:-	LCAT	10240	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1355	0.4938	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	CW2_LARGE_INTESTINE	1	1	0.6293	TRUE	0	0	0	2	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	MT-TA--MT-TC	18	11	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1743	0.1065	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CW2_LARGE_INTESTINE	1	1	0.2808	FALSE	462	80	0	856	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-TA--MT-TN	20	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1936	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CW2_LARGE_INTESTINE	1	1	0.1936	FALSE	369	2501	205	193	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-ND6--MT-TE	17	11	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1646	0.1065	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CW2_LARGE_INTESTINE	1	1	0.2711	FALSE	499	1288	110	792	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-TA--MT-TN	5	58	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0.5615	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CW2_LARGE_INTESTINE	1	1	0.6099	FALSE	369	2501	205	193	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-TA--MT-TN	17	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1646	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CW2_LARGE_INTESTINE	1	1	0.1646	FALSE	369	2501	205	193	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-TA--MT-TN	12	20	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1162	0.1936	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CW2_LARGE_INTESTINE	1	1	0.3098	FALSE	369	2501	205	193	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-TA--MT-TN	7	40	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0678	0.3873	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CW2_LARGE_INTESTINE	1	1	0.4551	FALSE	369	2501	205	193	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	NPM1P24--SET	16	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1549	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CW2_LARGE_INTESTINE	1	1	0.1549	TRUE	0	0	0	434	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	PSMB10--LCAT	6	37	PSMB10	3291	chr16:67968700:-	LCAT	9887	chr16:67974734:-	ONLY_REF_SPLICE	YES	143	0	0.23	1	0.0581	0.3582	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	CW2_LARGE_INTESTINE	0.23	1	0.4163	TRUE	0	0	0	2	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	MT-TA--MT-TN	7	29	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0678	0.2808	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CW2_LARGE_INTESTINE	1	1	0.3486	FALSE	369	2501	205	193	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-TL1--MT-RNR2	3	41	MT-TL1	1086	chrM:3315:+	MT-RNR2	5568	chrM:3163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0.3969	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CW2_LARGE_INTESTINE	1	1	0.4259	FALSE	7	521	16	32	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	HSP90AB1--MT-RNR2	13	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1259	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CW2_LARGE_INTESTINE	1	1	0.1259	FALSE	13	9	0	364	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	PSMB10--LCAT	11	5	PSMB10	2792	chr16:67969199:-	LCAT	10240	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	252	0	0.06	1	0.1065	0.0484	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	CW2_LARGE_INTESTINE	0.06	1	0.1549	TRUE	0	0	0	2	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	MT-ND6--MT-TE	8	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0775	0.1259	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CW2_LARGE_INTESTINE	0.95	1	0.2034	FALSE	499	1288	110	792	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-TA--MT-TC	11	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1065	0.0097	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CW2_LARGE_INTESTINE	1	1	0.1162	FALSE	462	80	0	856	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-ND6--MT-TE	6	19	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0581	0.1839	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CW2_LARGE_INTESTINE	1	1	0.242	FALSE	499	1288	110	792	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-TA--MT-TN	9	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0871	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CW2_LARGE_INTESTINE	1	1	0.0871	FALSE	369	2501	205	193	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-TA--MT-TC	3	16	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0.1549	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CW2_LARGE_INTESTINE	1	1	0.1839	FALSE	462	80	0	856	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-TA--MT-TN	7	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0678	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CW2_LARGE_INTESTINE	1	1	0.0678	FALSE	369	2501	205	193	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	REV3L--RPL28	7	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0678	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CW2_LARGE_INTESTINE	1	1	0.0678	TRUE	22	156	2	142	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	JSRP1--RPS28	6	1	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0581	0.0097	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CW2_LARGE_INTESTINE	1	1	0.0678	TRUE	0	1	0	84	1	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-TA--MT-TC	3	13	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.029	0.1259	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CW2_LARGE_INTESTINE	1	1	0.1549	FALSE	462	80	0	856	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	BRI3BP--UBC	6	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0581	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	CW2_LARGE_INTESTINE	1	1	0.0581	TRUE	5	99	5	34	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-ND6--MT-TE	6	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0581	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CW2_LARGE_INTESTINE	1	1	0.0581	FALSE	499	1288	110	792	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-TA--MT-TN	6	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0581	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CW2_LARGE_INTESTINE	1	1	0.0581	FALSE	369	2501	205	193	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	SAMD5--SASH1	6	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0581	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	CW2_LARGE_INTESTINE	1	1	0.0581	TRUE	53	396	64	110	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	MT-TA--MT-TC	3	11	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0.1065	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CW2_LARGE_INTESTINE	1	1	0.1355	FALSE	462	80	0	856	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CW2_LARGE_INTESTINE	1	1	0.0484	TRUE	0	0	0	434	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	XXbac-BPG252P9.9--IFI27	4	4	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	2072	0	0	1	0.0387	0.0387	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	CW2_LARGE_INTESTINE	0	1	0.0774	FALSE	0	2	0	13	2	FALSE	ACH-000998
CW2_LARGE_INTESTINE	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	29	1	0.17	0.0387	0.0194	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CW2_LARGE_INTESTINE	0.17	1	0.0581	TRUE	458	1351	185	561	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	JSRP1--RPS28	4	1	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0.0097	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CW2_LARGE_INTESTINE	1	1	0.0484	TRUE	0	1	0	84	1	FALSE	ACH-000998
CW2_LARGE_INTESTINE	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CW2_LARGE_INTESTINE	1	1	0.0387	FALSE	13	9	0	364	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	RP1-34H18.1--NAV3	3	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0.0194	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	CW2_LARGE_INTESTINE	1	1	0.0484	TRUE	254	575	65	124	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	JSRP1--RPS28	3	1	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0.0097	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CW2_LARGE_INTESTINE	1	1	0.0387	TRUE	0	1	0	84	1	FALSE	ACH-000998
CW2_LARGE_INTESTINE	PSMB10--LCAT	2	5	PSMB10	2668	chr16:67969323:-	LCAT	10240	chr16:67974381:-	ONLY_REF_SPLICE	YES	247	0	0.03	1	0.0194	0.0484	LOCAL_REARRANGEMENT:-:[2663],PSMB10->chr16:67968405-67970990:-,proteasome_subunit_beta_10,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	CW2_LARGE_INTESTINE	0.03	1	0.0678	TRUE	0	0	0	2	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	RPS25--FOXR1	3	0	RPS25	1410	chr11:118888992:-	FOXR1	7849	chr11:118849492:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	LOCAL_INVERSION:-:+:[34421],RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	CW2_LARGE_INTESTINE	1	1	0.029	TRUE	0	0	0	2	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	WSB1--STXBP4	3	0	WSB1	7698	chr17:25633908:+	STXBP4	35641	chr17:53218671:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	WSB1->WD_repeat_and_SOCS_box_containing_1,chr17:25621102-25640657:+,STXBP4->chr17:53046088-53241646:+,syntaxin_binding_protein_4	CW2_LARGE_INTESTINE	1	1	0.029	TRUE	0	0	0	2	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	DANCR--ITGB3BP	2	0	DANCR	1530	chr4:53579126:+	ITGB3BP	18619	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	CW2_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	9	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	27609	chr13:114193672:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	CW2_LARGE_INTESTINE	1	1	0.0194	TRUE	0	4	1	3	2	TRUE	ACH-000998
CW2_LARGE_INTESTINE	PCBP2--DYNLT1	2	0	PCBP2	7833	chr12:53849785:+	DYNLT1	29248	chr6:159058926:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1	CW2_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	CW2_LARGE_INTESTINE	1	1	0.0194	TRUE	1	10	0	18	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	TET2--PPA2	2	0	TET2	2105	chr4:106068136:+	PPA2	45971	chr4:106307793:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1,Heart_-_Atrial_Appendage=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[89261],TET2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:106067032-106200973:+,tet_methylcytosine_dioxygenase_2,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	CW2_LARGE_INTESTINE	1	1	0.0194	TRUE	1	0	0	1	0	TRUE	ACH-000998
CW2_LARGE_INTESTINE	TIMM23B--AGAP6	2	0	TIMM23B	6950	chr10:51387763:+	AGAP6	10946	chr10:51749068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,AGAP6->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_6,chr10:51748078-51770259:+	CW2_LARGE_INTESTINE	1	1	0.0194	TRUE	2	1	1	8	0	FALSE	ACH-000998
CW2_LARGE_INTESTINE	ANK3--CHPT1	1	1	ANK3	1228	chr10:62493021:-	CHPT1	76687	chr12:102107868:+	ONLY_REF_SPLICE	NO	13	23	0.13	0.08	0.0097	0.0097	ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-,CHPT1->choline_phosphotransferase_1,chr12:102090725-102137918:+	CW2_LARGE_INTESTINE	0.08	0.13	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000998
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--AC096579.7	5740	168	IGKV3-20	1101	chr2:89442543:-	AC096579.7	7309	chr2:89157196:-	ONLY_REF_SPLICE	YES	292	0	0.95	1	62.2239	1.8212	GTEx_FI:{Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Blood=[count:2=pct:1.1],Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4],Thyroid=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6]},IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,AC096579.7->chr2:89130700-89165653:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	64.0451	TRUE	9	277	13	4	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--AC096579.7	73	8343	IGKV3-20	1484	chr2:89442160:-	AC096579.7	7309	chr2:89157196:-	INCL_NON_REF_SPLICE	YES	166	0	0.98	1	0.7913	90.4415	GTEx_FI:{Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Blood=[count:2=pct:1.1],Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4],Thyroid=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6]},IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,AC096579.7->chr2:89130700-89165653:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	91.2328	TRUE	9	277	13	4	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--AC096579.13	1498	39	IGKV3-20	1586	chr2:89442058:-	AC096579.13	4589	chr2:89161074:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	16.2389	0.4228	GTEx_FI:{Lung=[count:2=pct:1.2],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Ovary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2]},IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,AC096579.13->chr2:89109984-89161075:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	16.6617	TRUE	11	319	19	3	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	335	3	ANP32B	9252	chr9:100774754:+	NCL	18735	chr2:232326361:-	INCL_NON_REF_SPLICE	YES	772	2714	0.3	0.11	3.6315	0.0325	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.3	3.664	TRUE	0	0	0	7	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ALG9--SIK2	137	55	ALG9	12534	chr11:111724103:-	SIK2	37587	chr11:111558725:+	ONLY_REF_SPLICE	YES	320	86	0.38	0.69	1.4851	0.5962	{Klijn_CCL:Lymphoid=1},LOCAL_INVERSION:-,chr11:+:[51342],ALG9->ALG9,_alpha-1,2-mannosyltransferase,chr11:111652919-111742305:-,chr11:111657010-111750149:-,SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.69	2.0813	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU7--ANAPC10	117	14	DLEU7	6126	chr13:51286674:-	ANAPC10	10779	chr4:146019571:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2683	0.1518	DLEU7->chr13:51285144-51418075:-,deleted_in_lymphocytic_leukemia,_7,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.4201	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRMT10C--LIFR	89	19	TRMT10C	1142	chr3:101280847:+	LIFR	14109	chr5:38530768:-	ONLY_REF_SPLICE	YES	145	0	0.43	1	0.9648	0.206	TRMT10C->chr3:101280706-101285290:+,tRNA_methyltransferase_10C,_mitochondrial_RNase_P_subunit,LIFR->Oncogene{Bushman},chr5:38475065-38608456:-,leukemia_inhibitory_factor_receptor_alpha	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	1.1708	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	86	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9323	0.271	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2033	TRUE	508	994	45	981	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	90	4	ANP32B	9252	chr9:100774754:+	NCL	18675	chr2:232326421:-	INCL_NON_REF_SPLICE	YES	772	2876	0.11	0.03	0.9756	0.0434	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.11	1.019	TRUE	0	0	0	7	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAPDH--SDC1	75	21	GAPDH	5014	chr12:6647130:+	SDC1	12997	chr2:20403790:-	INCL_NON_REF_SPLICE	YES	8764	15145	0.01	0.01	0.813	0.2276	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	1.0406	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	63	34	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	7	0	0.93	1	0.6829	0.3686	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	1.0515	TRUE	0	48	0	65	48	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	64	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6938	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6938	FALSE	369	2501	205	193	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-344E13.3--UBBP4	32	86	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	0.3469	0.9323	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.2792	TRUE	23	13	0	54	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	52	1	ANP32B	8161	chr9:100773632:+	NCL	19608	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	1233	2572	0.04	0.02	0.5637	0.0108	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.5745	TRUE	0	0	0	7	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	51	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	204	5	0.21	0.91	0.5529	0.0217	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.91	0.5746	TRUE	519	3926	326	965	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	49	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5312	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5312	TRUE	0	0	0	518	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	36	40	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	110	36	0.41	0.68	0.3903	0.4336	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.68	0.8239	TRUE	267	562	48	632	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDC1--IGH@	34	23	SDC1	5681	chr2:20403685:-	IGH@	126237	chr14:106174947:-	INCL_NON_REF_SPLICE	YES	16239	8932	0	0.01	0.3686	0.2493	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,IGH@->Oncogene{Bushman}	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.6179	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--SDC1	30	34	IGH@	115954	chr14:106174422:-	SDC1	136327	chr2:20403840:-	INCL_NON_REF_SPLICE	YES	20963	15381	0	0	0.3252	0.3686	IGH@->Oncogene{Bushman},SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.6938	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	26	21	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	110	36	0.3	0.57	0.2819	0.2276	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.57	0.5095	TRUE	267	562	48	632	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIAT--CECR7	27	17	MIAT	11407	chr22:27064365:+	CECR7	24256	chr22:17525763:+	INCL_NON_REF_SPLICE	YES	53	3	0.45	0.94	0.2927	0.1843	HGNC_GENEFAM,MIAT->chr22:27042392-27072438:+,myocardial_infarction_associated_transcript_(non-protein_coding),CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.94	0.477	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	28	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3035	0.0325	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.336	FALSE	499	1288	110	792	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	27	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2927	0.0542	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3469	FALSE	462	80	0	856	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	18	39	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	7	0	0.89	1	0.1951	0.4228	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.6179	TRUE	0	35	0	55	35	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--SDC1	7	69	IGH@	116706	chr14:106173670:-	SDC1	131879	chr2:20425117:-	INCL_NON_REF_SPLICE	NO	11558	2	0.01	0.97	0.0759	0.748	IGH@->Oncogene{Bushman},SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.97	0.8239	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-CO1	16	16	IGH@	116738	chr14:106173638:-	MT-CO1	132455	chrM:6557:+	INCL_NON_REF_SPLICE	YES	10680	18119	0	0	0.1734	0.1734	IGH@->Oncogene{Bushman},MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.3468	FALSE	0	1	2	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	10	35	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1084	0.3794	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4878	FALSE	369	2501	205	193	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--SDC1	10	34	IGH@	115958	chr14:106174418:-	SDC1	136332	chr2:20403835:-	INCL_NON_REF_SPLICE	YES	21276	15366	0	0	0.1084	0.3686	IGH@->Oncogene{Bushman},SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.477	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDC1--RPL18AP3	18	2	SDC1	6971	chr2:20402395:-	RPL18AP3	11888	chr12:104659135:+	INCL_NON_REF_SPLICE	YES	16587	12	0	0.62	0.1951	0.0217	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,RPL18AP3->chr12:104659056-104659669:+,ribosomal_protein_L18a_pseudogene_3	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.62	0.2168	TRUE	0	0	0	2	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDC1--RPL18AP3	18	2	SDC1	6963	chr2:20402403:-	RPL18AP3	11879	chr12:104659126:+	INCL_NON_REF_SPLICE	YES	16296	7	0	0.74	0.1951	0.0217	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,RPL18AP3->chr12:104659056-104659669:+,ribosomal_protein_L18a_pseudogene_3	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.74	0.2168	TRUE	0	0	0	2	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AP000345.1	18	1	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	6	0	0.76	1	0.1951	0.0108	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.2059	TRUE	0	8	0	37	1	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SIK2--DDX10	17	5	SIK2	3489	chr11:111491126:+	DDX10	32973	chr11:108559663:+	ONLY_REF_SPLICE	YES	91	79	0.19	0.22	0.1843	0.0542	SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2,DDX10->DEAD-box_helicase_10,Oncogene{Bushman},chr11:108535752-108811657:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.22	0.2385	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	16	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1734	0.065	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2384	TRUE	477	1352	189	275	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-CO3	14	10	IGH@	115982	chr14:106174394:-	MT-CO3	131861	chrM:9266:+	INCL_NON_REF_SPLICE	YES	21441	0	0	1	0.1518	0.1084	IGH@->Oncogene{Bushman},MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2602	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP11B--GOLGA8Q	13	8	ARHGAP11B	10906	chr15:30936905:+	GOLGA8Q	30316	chr15:30845995:+	ONLY_REF_SPLICE	YES	14	0	0.6	1	0.1409	0.0867	LOCAL_REARRANGEMENT:+:[61993],ARHGAP11B->Rho_GTPase_activating_protein_11B,chr15:30916697-31065196:+,GOLGA8Q->chr15:30844183-30854704:+,golgin_A8_family_member_Q	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.2276	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	11	16	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1192	0.1734	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2926	FALSE	369	2501	205	193	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	15	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1626	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1626	TRUE	0	0	0	434	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	43	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0434	0.4661	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5095	FALSE	369	2501	205	193	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	14	2	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	5434	0	0	1	0.1518	0.0217	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1735	TRUE	0	0	0	100	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	7	30	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0759	0.3252	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4011	FALSE	369	2501	205	193	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--SDC1	8	22	IGH@	127494	chr14:106054533:-	SDC1	137878	chr2:20402289:-	INCL_NON_REF_SPLICE	YES	3641	15065	0.01	0	0.0867	0.2385	IGH@->Oncogene{Bushman},SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.3252	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	13	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1409	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1409	TRUE	0	0	0	81	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	13	0	ZNF654	1688	chr3:88188941:+	HMGB2	12525	chr4:174253314:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1409	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1409	TRUE	0	0	0	518	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--SDC1	3	39	IGH@	115976	chr14:106174400:-	SDC1	136360	chr2:20403807:-	INCL_NON_REF_SPLICE	YES	21192	14875	0	0	0.0325	0.4228	IGH@->Oncogene{Bushman},SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.4553	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDC1--IGH@	3	39	SDC1	7831	chr2:20401535:-	IGH@	119981	chr14:106209241:-	INCL_NON_REF_SPLICE	NO	10767	10881	0	0	0.0325	0.4228	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,IGH@->Oncogene{Bushman}	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.4553	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-CO1	9	12	IGH@	115946	chr14:106174430:-	MT-CO1	132444	chrM:6546:+	INCL_NON_REF_SPLICE	YES	20423	17816	0	0	0.0976	0.1301	IGH@->Oncogene{Bushman},MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.2277	FALSE	0	1	2	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1084	0.0867	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1951	FALSE	499	1288	110	792	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	11	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	7	0	0.67	1	0.1192	0.0325	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.1517	FALSE	33	240	4	98	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--SDC1	3	34	IGH@	115951	chr14:106174425:-	SDC1	136324	chr2:20403843:-	INCL_NON_REF_SPLICE	YES	20859	15273	0	0	0.0325	0.3686	IGH@->Oncogene{Bushman},SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.4011	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XBP1--TTC28	11	2	XBP1	1300	chr22:29196286:-	TTC28	13179	chr22:28702631:-	ONLY_REF_SPLICE	YES	70	5	0.16	0.72	0.1192	0.0217	XBP1->X-box_binding_protein_1,chr22:29190543-29196585:-,TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.72	0.1409	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--SDC1	9	7	IGH@	115559	chr14:106174817:-	SDC1	137868	chr2:20402299:-	INCL_NON_REF_SPLICE	YES	16057	15346	0	0	0.0976	0.0759	IGH@->Oncogene{Bushman},SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1735	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-CO1	3	30	IGH@	127457	chr14:106054570:-	MT-CO1	132216	chrM:6318:+	INCL_NON_REF_SPLICE	YES	3724	16486	0.01	0	0.0325	0.3252	IGH@->Oncogene{Bushman},MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.3577	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	10	1	ANP32B	8117	chr9:100773588:+	NCL	19615	chr2:232325481:-	INCL_NON_REF_SPLICE	YES	1268	2515	0.01	0	0.1084	0.0108	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1192	TRUE	0	0	0	7	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	9	5	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	7	0	0.67	1	0.0976	0.0542	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.1518	FALSE	20	187	4	79	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	13	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0759	0.1409	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2168	FALSE	499	1288	110	792	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOTCH2--LAPTM4A	10	1	NOTCH2	1293	chr1:120611948:-	LAPTM4A	52478	chr2:20240772:-	ONLY_REF_SPLICE	YES	777	7652	0.01	0	0.1084	0.0108	NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2,LAPTM4A->chr2:20232411-20251789:-,lysosomal_protein_transmembrane_4_alpha	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1192	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-CO1	7	12	IGH@	115933	chr14:106174443:-	MT-CO1	132455	chrM:6557:+	INCL_NON_REF_SPLICE	YES	19938	18119	0	0	0.0759	0.1301	IGH@->Oncogene{Bushman},MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.206	FALSE	0	1	2	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0976	0.0325	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1301	FALSE	499	1288	110	792	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-CO1	4	21	IGH@	128563	chr14:106053464:-	MT-CO1	132455	chrM:6557:+	INCL_NON_REF_SPLICE	YES	114	18119	0.18	0	0.0434	0.2276	IGH@->Oncogene{Bushman},MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.18	0.271	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMYD4--BZRAP1-AS1	9	1	SMYD4	3432	chr17:1731155:-	BZRAP1-AS1	30743	chr17:56472267:+	ONLY_REF_SPLICE	YES	35	0	0.22	1	0.0976	0.0108	SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-,BZRAP1-AS1->BZRAP1_antisense_RNA_1,chr17:56402811-56493127:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.1084	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HLA-A--MT-ND1	9	0	HLA-A	2742	chr6:29910778:+	MT-ND1	8756	chrM:3437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0976	0	HLA-A->chr6:29909037-29913661:+,major_histocompatibility_complex,_class_I,_A,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0976	FALSE	1	0	0	11	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	9	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0976	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0976	FALSE	0	0	0	189	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	23	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	110	36	0.19	0.42	0.0325	0.2493	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.42	0.2818	TRUE	267	562	48	632	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDC1--IGH@	8	2	SDC1	5574	chr2:20403792:-	IGH@	126706	chr14:106174478:-	INCL_NON_REF_SPLICE	YES	15134	17528	0	0	0.0867	0.0217	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,IGH@->Oncogene{Bushman}	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1084	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAPDH--SDC1	3	21	GAPDH	5169	chr12:6647285:+	SDC1	12991	chr2:20403796:-	INCL_NON_REF_SPLICE	NO	6643	15068	0	0	0.0325	0.2276	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.2601	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6KC1--KCNH1	7	5	RPS6KC1	8110	chr1:213303232:+	KCNH1	25348	chr1:211280719:-	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.0759	0.0542	{Klijn_CCL:Lymphoid=1},RPS6KC1->chr1:213224589-213448116:+,ribosomal_protein_S6_kinase_C1,KCNH1->Oncogene{Bushman},chr1:210856555-211307457:-,potassium_voltage-gated_channel_subfamily_H_member_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.1301	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-CO3	5	12	IGH@	115998	chr14:106174378:-	MT-CO3	131877	chrM:9282:+	INCL_NON_REF_SPLICE	YES	20148	8	0	0.68	0.0542	0.1301	IGH@->Oncogene{Bushman},MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.68	0.1843	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0759	0.0434	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1193	FALSE	462	80	0	856	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	8	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0867	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0867	FALSE	369	2501	205	193	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-CO1	4	15	IGH@	116681	chr14:106173695:-	MT-CO1	132455	chrM:6557:+	INCL_NON_REF_SPLICE	YES	11720	18119	0	0	0.0434	0.1626	IGH@->Oncogene{Bushman},MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.206	FALSE	0	1	2	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-CO3	7	3	IGH@	116223	chr14:106174153:-	MT-CO3	132165	chrM:9570:+	INCL_NON_REF_SPLICE	YES	9776	11642	0	0	0.0759	0.0325	IGH@->Oncogene{Bushman},MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1084	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf56--SPRR2F	6	6	C1orf56	2113	chr1:151021328:+	SPRR2F	9011	chr1:153085228:-	ONLY_REF_SPLICE	YES	13	0	0.48	1	0.065	0.065	C1orf56->chr1:151020216-151024462:+,chromosome_1_open_reading_frame_56,SPRR2F->chr1:153084590-153085991:-,small_proline_rich_protein_2F	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	0.13	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-CO1	5	10	IGH@	115559	chr14:106174817:-	MT-CO1	132234	chrM:6336:+	INCL_NON_REF_SPLICE	YES	16058	16195	0	0	0.0542	0.1084	IGH@->Oncogene{Bushman},MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1626	FALSE	0	1	2	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDC1--IGH@	6	6	SDC1	5655	chr2:20403711:-	IGH@	126706	chr14:106174478:-	INCL_NON_REF_SPLICE	YES	16289	17528	0	0	0.065	0.065	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,IGH@->Oncogene{Bushman}	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.13	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDC1--IGH@	4	13	SDC1	5659	chr2:20403707:-	IGH@	126215	chr14:106174969:-	INCL_NON_REF_SPLICE	YES	16213	9341	0	0	0.0434	0.1409	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,IGH@->Oncogene{Bushman}	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1843	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	6	4	ANP32B	9251	chr9:100774753:+	NCL	18680	chr2:232326416:-	INCL_NON_REF_SPLICE	YES	770	2923	0.01	0	0.065	0.0434	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1084	TRUE	0	0	0	7	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0759	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0759	FALSE	13	9	0	364	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--SDC1	4	12	IGH@	115948	chr14:106174428:-	SDC1	137650	chr2:20402517:-	INCL_NON_REF_SPLICE	YES	20609	16098	0	0	0.0434	0.1301	IGH@->Oncogene{Bushman},SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1735	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5--KHDC3L	6	4	KCNQ5	1796	chr6:73332315:+	KHDC3L	27908	chr6:74072440:+	INCL_NON_REF_SPLICE	YES	7	0	0.59	1	0.065	0.0434	KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5,KHDC3L->KH_domain_containing_3_like,_subcortical_maternal_complex_member,chr6:74072400-74073894:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.1084	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0759	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0759	FALSE	230	193	14	283	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	12	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0434	0.1301	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1735	FALSE	369	2501	205	193	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EDF1--PTMA	6	3	EDF1	2690	chr9:139757740:-	PTMA	11284	chr2:232576058:+	ONLY_REF_SPLICE	YES	740	7792	0.01	0	0.065	0.0325	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0975	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-CO1	4	11	IGH@	115909	chr14:106174467:-	MT-CO1	132455	chrM:6557:+	INCL_NON_REF_SPLICE	NO	17645	18119	0	0	0.0434	0.1192	IGH@->Oncogene{Bushman},MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1626	FALSE	0	1	2	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--SDC1	6	3	IGH@	116205	chr14:106174171:-	SDC1	139255	chr2:20400912:-	INCL_NON_REF_SPLICE	YES	9023	6901	0	0	0.065	0.0325	IGH@->Oncogene{Bushman},SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0975	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--SDC1	3	15	IGH@	116507	chr14:106173869:-	SDC1	138468	chr2:20401699:-	INCL_NON_REF_SPLICE	NO	13435	11058	0	0	0.0325	0.1626	IGH@->Oncogene{Bushman},SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1951	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--SDC1	3	15	IGH@	128389	chr14:106053638:-	SDC1	138468	chr2:20401699:-	INCL_NON_REF_SPLICE	NO	2463	11058	0.01	0	0.0325	0.1626	IGH@->Oncogene{Bushman},SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1951	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	7	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0.0759	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1301	FALSE	499	1288	110	792	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDC1--IGH@	3	15	SDC1	5687	chr2:20403679:-	IGH@	126394	chr14:106174790:-	INCL_NON_REF_SPLICE	YES	16061	17380	0	0	0.0325	0.1626	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,IGH@->Oncogene{Bushman}	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1951	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	13	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0.1409	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1734	FALSE	499	1288	110	792	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	6	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.065	0.0108	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0758	FALSE	16	356	14	466	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BSG--GZMM	6	0	BSG	2405	chr19:572701:+	GZMM	14559	chr19:547280:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.065	0	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[21378],BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,GZMM->chr19:544034-549919:+,granzyme_M	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.065	TRUE	0	0	0	5	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.065	FALSE	230	198	14	283	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.065	FALSE	462	80	0	856	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.065	FALSE	369	2501	205	193	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	6	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.065	TRUE	46	1352	75	139	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf56--SPRR2F	3	9	C1orf56	3745	chr1:151022960:+	SPRR2F	9011	chr1:153085228:-	ONLY_REF_SPLICE	YES	8	0	0.6	1	0.0325	0.0976	C1orf56->chr1:151020216-151024462:+,chromosome_1_open_reading_frame_56,SPRR2F->chr1:153084590-153085991:-,small_proline_rich_protein_2F	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.1301	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	5	1	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	121	0	0.05	1	0.0542	0.0108	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.065	TRUE	0	0	0	81	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	5	1	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	19	0	0.24	1	0.0542	0.0108	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.065	FALSE	59	21	0	114	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	5	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0542	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0542	TRUE	0	16	0	53	13	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP11B--GOLGA8Q	4	4	ARHGAP11B	8746	chr15:30931023:+	GOLGA8Q	30316	chr15:30845995:+	ONLY_REF_SPLICE	YES	15	0	0.35	1	0.0434	0.0434	LOCAL_REARRANGEMENT:+:[61993],ARHGAP11B->Rho_GTPase_activating_protein_11B,chr15:30916697-31065196:+,GOLGA8Q->chr15:30844183-30854704:+,golgin_A8_family_member_Q	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	1	0.0868	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0542	FALSE	499	1288	110	792	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	7	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0.0759	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1084	FALSE	499	1288	110	792	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAPDH--SDC1	3	6	GAPDH	5319	chr12:6647435:+	SDC1	14342	chr2:20402445:-	INCL_NON_REF_SPLICE	YES	156	16435	0.05	0	0.0325	0.065	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0975	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIAT--CECR7	4	2	MIAT	9942	chr22:27062900:+	CECR7	24256	chr22:17525763:+	ONLY_REF_SPLICE	YES	43	3	0.12	0.67	0.0434	0.0217	HGNC_GENEFAM,MIAT->chr22:27042392-27072438:+,myocardial_infarction_associated_transcript_(non-protein_coding),CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.67	0.0651	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0434	0.0217	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0651	FALSE	515	4851	409	746	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAPDH--SDC1	3	5	GAPDH	5302	chr12:6647418:+	SDC1	14302	chr2:20402485:-	INCL_NON_REF_SPLICE	YES	1044	16237	0.01	0	0.0325	0.0542	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0867	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--SDC1	3	5	IGH@	115418	chr14:106174958:-	SDC1	136473	chr2:20403694:-	INCL_NON_REF_SPLICE	YES	8942	16272	0	0	0.0325	0.0542	IGH@->Oncogene{Bushman},SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0867	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	10	0	0.33	1	0.0434	0.0108	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.0542	FALSE	59	21	0	114	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	4	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1251	0	0	1	0.0434	0.0108	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0542	FALSE	0	0	0	189	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMC6--KIDINS220	3	5	SMC6	29385	chr2:17876419:-	KIDINS220	50204	chr2:8946499:-	ONLY_REF_SPLICE	YES	246	77	0.03	0.09	0.0325	0.0542	SMC6->chr2:17845079-17981509:-,structural_maintenance_of_chromosomes_6,KIDINS220->chr2:8865408-8977760:-,kinase_D-interacting_substrate_220kDa	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.09	0.0867	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0434	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0434	FALSE	13	9	0	364	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0434	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0434	FALSE	369	2501	205	193	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0434	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0434	TRUE	0	0	0	434	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-219G17.4--PLA2G6	4	0	RP11-219G17.4	2765	chr17:76267333:-	PLA2G6	39371	chr22:38509661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0434	0	GTEx_FI:{Testis=[count:23=pct:21.9],Brain=[count:18=pct:2.7],Nerve=[count:11=pct:6.5],Thyroid=[count:8=pct:4.5],Ovary=[count:6=pct:11.3],Colon=[count:5=pct:2.6],Pancreas=[count:3=pct:1.7],Uterus=[count:2=pct:4.7],Spleen=[count:2=pct:1.8],Blood=[count:2=pct:1.1],Prostate=[count:2=pct:3.3],Vagina=[count:1=pct:1.8],Blood_Vessel=[count:1=pct:0.3],Muscle=[count:1=pct:0.4],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},RP11-219G17.4->chr17:76257430-76274573:-,PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0434	TRUE	63	15	0	9	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDC1--IGH@	3	4	SDC1	5617	chr2:20403749:-	IGH@	126764	chr14:106174420:-	INCL_NON_REF_SPLICE	YES	16012	20966	0	0	0.0325	0.0434	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,IGH@->Oncogene{Bushman}	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0759	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	3	3	ANP32B	10264	chr9:100777657:+	NCL	18786	chr2:232326310:-	INCL_NON_REF_SPLICE	NO	596	2708	0.01	0	0.0325	0.0325	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.065	FALSE	0	0	0	2	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	3	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0.0217	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0542	TRUE	274	363	69	150	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDC1--IGH@	3	2	SDC1	7831	chr2:20401535:-	IGH@	131634	chr14:106092236:-	INCL_NON_REF_SPLICE	NO	10767	3836	0	0	0.0325	0.0217	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,IGH@->Oncogene{Bushman}	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0542	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDC1--IGH@	3	2	SDC1	1522	chr2:20424673:-	IGH@	62305	chr14:106622427:-	INCL_NON_REF_SPLICE	NO	303	11969	0.02	0	0.0325	0.0217	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,IGH@->Oncogene{Bushman}	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0542	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDC1--IGH@	3	2	SDC1	7831	chr2:20401535:-	IGH@	128895	chr14:106110960:-	INCL_NON_REF_SPLICE	NO	10767	4026	0	0	0.0325	0.0217	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,IGH@->Oncogene{Bushman}	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0542	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XRCC5--TMEM169	3	2	XRCC5	17410	chr2:217006042:+	TMEM169	31699	chr2:216960561:+	ONLY_REF_SPLICE	YES	630	0	0.01	1	0.0325	0.0217	LOCAL_REARRANGEMENT:+:[4681],XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,TMEM169->chr2:216946589-216967506:+,transmembrane_protein_169	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0542	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--NCL	3	1	ANP32B	10273	chr9:100777666:+	NCL	19621	chr2:232325475:-	INCL_NON_REF_SPLICE	NO	536	2530	0.01	0	0.0325	0.0108	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0433	FALSE	0	0	0	2	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	3	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	22	0	0.15	1	0.0325	0.0108	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.0433	FALSE	59	21	0	114	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	3	0	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0325	TRUE	0	11	0	26	8	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	0	EIF1	1087	chr17:39845223:+	RPS28	8126	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0325	TRUE	0	0	0	81	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0325	TRUE	0	0	0	81	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1779	chrM:11538:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0325	FALSE	231	217	16	283	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	3	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0325	FALSE	369	2501	205	193	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMYD4--BZRAP1-AS1	3	0	SMYD4	3432	chr17:1731155:-	BZRAP1-AS1	32133	chr17:56493112:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-,BZRAP1-AS1->BZRAP1_antisense_RNA_1,chr17:56402811-56493127:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG3--GNAS	3	0	SNHG3	3181	chr1:28834672:+	GNAS	24750	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0325	TRUE	0	0	0	2	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--NPM1	3	0	TXNDC5	2343	chr6:7910752:-	NPM1	18924	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0325	TRUE	0	0	0	5	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C7orf50--MAD1L1	2	3	C7orf50	3078	chr7:1166893:-	MAD1L1	55558	chr7:1855864:-	ONLY_REF_SPLICE	YES	190	112	0.03	0.04	0.0217	0.0325	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.0542	TRUE	0	4	0	5	2	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIC1--EIF4A1	2	3	HIC1	2085	chr17:1958532:+	EIF4A1	13885	chr17:7480374:+	ONLY_REF_SPLICE	YES	29	3712	0.15	0	0.0217	0.0325	HIC1->Oncogene{Bushman},chr17:1957448-1962981:+,hypermethylated_in_cancer_1,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.15	0.0542	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0108	0.065	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0758	TRUE	160	277	29	98	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AKT3--ADSS	2	1	AKT3	3500	chr1:244006427:-	ADSS	38307	chr1:244601070:-	ONLY_REF_SPLICE	YES	12	126	0.2	0.02	0.0217	0.0108	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,ADSS->adenylosuccinate_synthase,chr1:244571796-244615436:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.2	0.0325	TRUE	0	1	0	4	1	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--ACSF3	2	1	CBFA2T3	1548	chr16:89043065:-	ACSF3	38376	chr16:89211675:+	ONLY_REF_SPLICE	YES	43	131	0.07	0.02	0.0217	0.0108	CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,ACSF3->acyl-CoA_synthetase_family_member_3,chr16:89154783-89222254:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.07	0.0325	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELL--FKBP8	2	1	ELL	1207	chr19:18632731:-	FKBP8	21177	chr19:18652805:-	ONLY_REF_SPLICE	YES	127	71	0.02	0.04	0.0217	0.0108	GTEx_FI:{Esophagus=[count:1=pct:0.2],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[9624],ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0325	TRUE	2	2	0	6	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GSE1--ACSF3	2	1	GSE1	4784	chr16:85682357:+	ACSF3	39031	chr16:89199544:+	ONLY_REF_SPLICE	YES	173	92	0.02	0.03	0.0217	0.0108	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,ACSF3->acyl-CoA_synthetase_family_member_3,chr16:89154783-89222254:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0325	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CELF1--PGBD2	2	0	CELF1	22397	chr11:47493743:-	PGBD2	35337	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	47891	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	1	3	0	10	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS6-AS1--RASA3	2	0	GAS6-AS1	1062	chr13:114518664:+	RASA3	14263	chr13:114795363:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS6-AS1--TFDP1	2	0	GAS6-AS1	1062	chr13:114518664:+	TFDP1	11094	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	4	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IFNG-AS1--RAP1B	2	0	IFNG-AS1	1135	chr12:68383359:+	RAP1B	17582	chr12:69042479:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	IFNG-AS1->IFNG_antisense_RNA_1,chr12:68383225-68628466:+,RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFV3--U2AF1	2	0	NDUFV3	5809	chr21:44317157:+	U2AF1	26761	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Substantia_nigra=1},NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	5	0	8	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLCO4A1--EEF1D	2	0	SLCO4A1	1109	chr20:61273905:+	EEF1D	29187	chr8:144669019:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	2	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMYD4--BZRAP1-AS1	2	0	SMYD4	3432	chr17:1731155:-	BZRAP1-AS1	31848	chr17:56492827:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-,BZRAP1-AS1->BZRAP1_antisense_RNA_1,chr17:56402811-56493127:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG3--HSPA9	2	0	SNHG3	3181	chr1:28834672:+	HSPA9	17859	chr5:137895780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBRG4--COX4I1	2	0	TBRG4	1405	chr7:45151242:-	COX4I1	20671	chr16:85838543:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4,COX4I1->chr16:85832239-85840650:+,cytochrome_c_oxidase_subunit_4I1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C7orf50--MAD1L1	1	3	C7orf50	3078	chr7:1166893:-	MAD1L1	50779	chr7:1938026:-	ONLY_REF_SPLICE	YES	190	124	0.02	0.03	0.0108	0.0325	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0433	TRUE	0	1	0	6	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	1	3	CTD-2008L17.1	3828	chr18:53685010:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0108	0.0325	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0433	FALSE	0	9	1	3	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0108	0.0325	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0433	FALSE	407	2205	196	549	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0108	0.0217	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0325	FALSE	467	2173	244	435	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	1	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	1	363	0.67	0.01	0.0108	0.0108	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.67	0.0216	FALSE	0	1	0	18	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC113189.5--EIF4A1	1	1	AC113189.5	1155	chr17:7487236:-	EIF4A1	7664	chr17:7477578:+	ONLY_REF_SPLICE	YES	7	32	0.22	0.06	0.0108	0.0108	LOCAL_INVERSION:-:+:[2959],AC113189.5->chr17:7485282-7487390:-,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.22	0.0216	TRUE	0	0	0	2	0	TRUE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--ACSF3	1	1	CBFA2T3	6570	chr16:88967912:-	ACSF3	34651	chr16:89199544:+	ONLY_REF_SPLICE	YES	46	92	0.04	0.02	0.0108	0.0108	CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,ACSF3->acyl-CoA_synthetase_family_member_3,chr16:89154783-89222254:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD38--LONP1	1	1	CD38	1373	chr4:15780270:+	LONP1	28710	chr19:5700938:-	ONLY_REF_SPLICE	NO	266	963	0.01	0	0.0108	0.0108	CD38->CD38_molecule,chr4:15779898-15854853:+,LONP1->chr19:5691845-5720583:-,lon_peptidase_1,_mitochondrial	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GALNS--ACSF3	1	1	GALNS	1213	chr16:88923166:-	ACSF3	30692	chr16:89169012:+	ONLY_REF_SPLICE	NO	33	83	0.06	0.02	0.0108	0.0108	GALNS->Oncogene{Bushman},chr16:88880142-88923378:-,galactosamine_(N-acetyl)-6-sulfatase,ACSF3->acyl-CoA_synthetase_family_member_3,chr16:89154783-89222254:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.06	0.0216	TRUE	0	0	0	2	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GALNS--ACSF3	1	1	GALNS	1213	chr16:88923166:-	ACSF3	36724	chr16:89199544:+	ONLY_REF_SPLICE	NO	33	92	0.06	0.02	0.0108	0.0108	GALNS->Oncogene{Bushman},chr16:88880142-88923378:-,galactosamine_(N-acetyl)-6-sulfatase,ACSF3->acyl-CoA_synthetase_family_member_3,chr16:89154783-89222254:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.06	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GSE1--ACSF3	1	1	GSE1	2365	chr16:85647004:+	ACSF3	39031	chr16:89199544:+	ONLY_REF_SPLICE	NO	12	92	0.14	0.02	0.0108	0.0108	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,ACSF3->acyl-CoA_synthetase_family_member_3,chr16:89154783-89222254:+	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.14	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KPNB1--HNRNPA1	1	1	KPNB1	18653	chr17:45752148:+	HNRNPA1	33427	chr12:54676627:+	ONLY_REF_SPLICE	YES	497	3836	0	0	0.0108	0.0108	KPNB1->chr17:45726842-45762871:+,karyopherin_subunit_beta_1,HNRNPA1->chr12:54673977-54680872:+,heterogeneous_nuclear_ribonucleoprotein_A1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MKLN1-AS1--EXOC4	1	1	MKLN1-AS1	11360	chr7:130668812:-	EXOC4	25886	chr7:133041084:+	ONLY_REF_SPLICE	YES	10	84	0.17	0.02	0.0108	0.0108	MKLN1-AS1->chr7:130626519-130794935:-,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.17	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ST3GAL1--EIF4A1	1	1	ST3GAL1	1248	chr8:134583936:-	EIF4A1	30765	chr17:7480374:+	ONLY_REF_SPLICE	YES	74	3712	0.03	0	0.0108	0.0108	ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000838
AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUMF2--CHCHD2	1	1	SUMF2	2534	chr7:56136331:+	CHCHD2	14481	chr7:56172168:-	ONLY_REF_SPLICE	YES	635	912	0	0	0.0108	0.0108	LOCAL_INVERSION:+:-:[20899],SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2,CHCHD2->chr7:56169262-56174269:-,coiled-coil-helix-coiled-coil-helix_domain_containing_2	AMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000838
NCIH2081_LUNG	UBE2E1--DAZL	224	161	UBE2E1	6001	chr3:23853001:+	DAZL	24752	chr3:16633655:-	ONLY_REF_SPLICE	YES	112	0	0.77	1	2.273	1.6337	UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,DAZL->chr3:16628299-16711813:-,deleted_in_azoospermia_like	NCIH2081_LUNG	0.77	1	3.9067	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-408A13.2--NFIB	77	32	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	126	1	0.46	0.7813	0.3247	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	NCIH2081_LUNG	0.46	1	1.106	TRUE	0	14	0	20	14	FALSE	ACH-000394
NCIH2081_LUNG	ZNF852--LZTFL1	69	1	ZNF852	1084	chr3:44552045:-	LZTFL1	16119	chr3:45879543:-	ONLY_REF_SPLICE	YES	0	10	1	0.88	0.7002	0.0101	ZNF852->chr3:44540462-44552128:-,zinc_finger_protein_852,LZTFL1->chr3:45864808-45957534:-,leucine_zipper_transcription_factor_like_1	NCIH2081_LUNG	0.88	1	0.7103	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TIMM23B--LINC00843	61	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.619	0.2029	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2081_LUNG	0.99	1	0.8219	TRUE	508	994	45	981	0	FALSE	ACH-000394
NCIH2081_LUNG	UBE2E1--WNT7A	47	25	UBE2E1	6001	chr3:23853001:+	WNT7A	18291	chr3:13916670:-	ONLY_REF_SPLICE	YES	112	0	0.39	1	0.4769	0.2537	{Klijn_CCL:Lung=1},UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,WNT7A->Wnt_family_member_7A,chr3:13857755-13921618:-	NCIH2081_LUNG	0.39	1	0.7306	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-120D5.1--GS1-594A7.3	45	25	RP11-120D5.1	4510	chrX:11074056:-	GS1-594A7.3	16182	chrX:15639135:+	ONLY_REF_SPLICE	YES	3	0	0.96	1	0.4566	0.2537	RP11-120D5.1->chrX:10865996-11129261:-,GS1-594A7.3->chrX:15621004-15639607:+	NCIH2081_LUNG	0.96	1	0.7103	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	SDK2--WRAP53	48	12	SDK2	1065	chr17:71640164:-	WRAP53	56835	chr17:7591966:+	ONLY_REF_SPLICE	YES	14	30	0.81	0.67	0.4871	0.1218	SDK2->chr17:71330523-71640228:-,sidekick_cell_adhesion_molecule_2,WRAP53->Oncogene{Bushman},WD_repeat_containing_antisense_to_TP53,chr17:7589389-7606820:+	NCIH2081_LUNG	0.67	0.81	0.6089	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-123O10.4--GRIP1	43	19	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	24	1	0.72	0.4363	0.1928	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2081_LUNG	0.72	1	0.6291	FALSE	416	2512	207	587	0	FALSE	ACH-000394
NCIH2081_LUNG	OR51S1--TP53I11	47	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4769	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH2081_LUNG	1	1	0.4769	TRUE	402	216	10	229	0	FALSE	ACH-000394
NCIH2081_LUNG	RPSA--PRSS46	36	38	RPSA	5039	chr3:39452490:+	PRSS46	12313	chr3:46761493:-	ONLY_REF_SPLICE	YES	3050	1	0.02	0.99	0.3653	0.3856	RPSA->chr3:39448180-39454033:+,ribosomal_protein_SA,PRSS46->chr3:46761073-46777919:-,protease,_serine_46	NCIH2081_LUNG	0.02	0.99	0.7509	TRUE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	C15orf57--CBX3	36	34	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	93	47	0.43	0.6	0.3653	0.345	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2081_LUNG	0.43	0.6	0.7103	TRUE	267	562	48	632	0	FALSE	ACH-000394
NCIH2081_LUNG	RFTN1--GPD1L	39	11	RFTN1	3399	chr3:16535232:-	GPD1L	32002	chr3:32200368:+	ONLY_REF_SPLICE	YES	33	60	0.6	0.45	0.3957	0.1116	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,GPD1L->chr3:32147181-32210205:+,glycerol-3-phosphate_dehydrogenase_1-like	NCIH2081_LUNG	0.45	0.6	0.5073	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MT-TA--MT-TC	39	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3957	0.0913	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2081_LUNG	1	1	0.487	FALSE	462	80	0	856	0	FALSE	ACH-000394
NCIH2081_LUNG	ZNF654--HMGB2	40	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4059	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2081_LUNG	1	1	0.4059	TRUE	0	0	0	518	0	FALSE	ACH-000394
NCIH2081_LUNG	RP11-268G12.3--HDHD1	33	14	RP11-268G12.3	5320	chrX:27177022:-	HDHD1	18229	chrX:6968513:-	ONLY_REF_SPLICE	YES	5	12	0.9	0.8	0.3349	0.1421	RP11-268G12.3->chrX:27061024-27194415:-,HDHD1->chrX:6966961-7066231:-	NCIH2081_LUNG	0.8	0.9	0.477	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	LRRFIP2--NEK10	31	7	LRRFIP2	4142	chr3:37216030:-	NEK10	84367	chr3:27161359:-	ONLY_REF_SPLICE	YES	27	0	0.58	1	0.3146	0.071	LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2,NEK10->NIMA_related_kinase_10,chr3:27151576-27410951:-	NCIH2081_LUNG	0.58	1	0.3856	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	UBE2E1--DAZL	9	73	UBE2E1	2519	chr3:23848912:+	DAZL	24752	chr3:16633655:-	ONLY_REF_SPLICE	YES	78	0	0.51	1	0.0913	0.7407	UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,DAZL->chr3:16628299-16711813:-,deleted_in_azoospermia_like	NCIH2081_LUNG	0.51	1	0.832	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TIMM23--RP11-464F9.1	25	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	135	4	0.18	0.88	0.2537	0.0507	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2081_LUNG	0.18	0.88	0.3044	TRUE	519	3926	326	965	0	FALSE	ACH-000394
NCIH2081_LUNG	CMTM8--TRANK1	23	10	CMTM8	1441	chr3:32280611:+	TRANK1	9510	chr3:36949945:-	INCL_NON_REF_SPLICE	YES	16	0	0.67	1	0.2334	0.1015	CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,TRANK1->chr3:36868311-36986548:-,tetratricopeptide_repeat_and_ankyrin_repeat_containing_1	NCIH2081_LUNG	0.67	1	0.3349	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	HDHD1--RP11-268G12.1	22	8	HDHD1	6377	chrX:6995261:-	RP11-268G12.1	18357	chrX:27354610:-	ONLY_REF_SPLICE	YES	11	7	0.73	0.81	0.2232	0.0812	HDHD1->chrX:6966961-7066231:-,RP11-268G12.1->chrX:27193037-27417114:-	NCIH2081_LUNG	0.73	0.81	0.3044	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	GPD1L--EDEM1	20	12	GPD1L	6700	chr3:32188226:+	EDEM1	29037	chr3:5255004:+	ONLY_REF_SPLICE	YES	46	27	0.41	0.54	0.2029	0.1218	{Klijn_CCL:Lung=1},GPD1L->chr3:32147181-32210205:+,glycerol-3-phosphate_dehydrogenase_1-like,EDEM1->ER_degradation_enhancing_alpha-mannosidase_like_protein_1,chr3:5229331-5261642:+	NCIH2081_LUNG	0.41	0.54	0.3247	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-120D5.1--GS1-594A7.3	18	19	RP11-120D5.1	2349	chrX:11125021:-	GS1-594A7.3	16182	chrX:15639135:+	ONLY_REF_SPLICE	YES	7	0	0.84	1	0.1826	0.1928	RP11-120D5.1->chrX:10865996-11129261:-,GS1-594A7.3->chrX:15621004-15639607:+	NCIH2081_LUNG	0.84	1	0.3754	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MAST2--DNAJC16	21	4	MAST2	9343	chr1:46425149:+	DNAJC16	35608	chr1:15860732:+	ONLY_REF_SPLICE	YES	27	5	0.48	0.83	0.2131	0.0406	MAST2->chr1:46252659-46501796:+,microtubule_associated_serine/threonine_kinase_2,DNAJC16->DnaJ_heat_shock_protein_family_(Hsp40)_member_C16,chr1:15853308-15918874:+	NCIH2081_LUNG	0.48	0.83	0.2537	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	LRP8--HSPG2	17	10	LRP8	21889	chr1:53716362:-	HSPG2	29722	chr1:22222803:-	ONLY_REF_SPLICE	YES	44	1	0.38	0.96	0.1725	0.1015	{Klijn_CCL:Lung=1},LRP8->LDL_receptor_related_protein_8,chr1:53711217-53793742:-,HSPG2->Oncogene{Bushman},chr1:22148738-22263790:-,heparan_sulfate_proteoglycan_2	NCIH2081_LUNG	0.38	0.96	0.274	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	UBE2E1--DAZL	5	58	UBE2E1	6001	chr3:23853001:+	DAZL	25851	chr3:16630220:-	ONLY_REF_SPLICE	YES	112	12	0.36	0.84	0.0507	0.5885	UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,DAZL->chr3:16628299-16711813:-,deleted_in_azoospermia_like	NCIH2081_LUNG	0.36	0.84	0.6392	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	SACM1L--TRAK1	17	5	SACM1L	15336	chr3:45773643:+	TRAK1	35739	chr3:42218306:+	ONLY_REF_SPLICE	YES	49	32	0.31	0.41	0.1725	0.0507	SACM1L->SAC1_suppressor_of_actin_mutations_1-like_(yeast),chr3:45730548-45786916:+,TRAK1->chr3:42055294-42267381:+,trafficking_protein,_kinesin_binding_1	NCIH2081_LUNG	0.31	0.41	0.2232	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TBC1D5--CAPN7	15	6	TBC1D5	13947	chr3:17664140:-	CAPN7	56609	chr3:15253611:+	ONLY_REF_SPLICE	YES	16	20	0.57	0.51	0.1522	0.0609	TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-,CAPN7->calpain_7,chr3:15247659-15294425:+	NCIH2081_LUNG	0.51	0.57	0.2131	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	C15orf57--CBX3	10	25	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	91	50	0.28	0.41	0.1015	0.2537	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2081_LUNG	0.28	0.41	0.3552	TRUE	267	562	48	632	0	FALSE	ACH-000394
NCIH2081_LUNG	LINC01014--KCNMB2	13	7	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	9	271	0.69	0.07	0.1319	0.071	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH2081_LUNG	0.07	0.69	0.2029	FALSE	11	60	26	37	0	FALSE	ACH-000394
NCIH2081_LUNG	RP4-565E6.1--HYDIN	13	6	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	8	1	0.7	0.1319	0.0609	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH2081_LUNG	0.7	1	0.1928	TRUE	456	1387	91	133	0	FALSE	ACH-000394
NCIH2081_LUNG	CNOT10--ZNF385D-AS2	11	13	CNOT10	18210	chr3:32778982:+	ZNF385D-AS2	32481	chr3:22000324:+	ONLY_REF_SPLICE	YES	49	0	0.33	1	0.1116	0.1319	CNOT10->CCR4-NOT_transcription_complex_subunit_10,chr3:32726637-32815367:+,ZNF385D-AS2->ZNF385D_antisense_RNA_2,chr3:21984058-22021320:+	NCIH2081_LUNG	0.33	1	0.2435	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-120D5.1--GS1-594A7.3	7	29	RP11-120D5.1	5563	chrX:11056723:-	GS1-594A7.3	16182	chrX:15639135:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.071	0.2943	RP11-120D5.1->chrX:10865996-11129261:-,GS1-594A7.3->chrX:15621004-15639607:+	NCIH2081_LUNG	0.95	1	0.3653	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	AC144521.1--RBMS3	13	4	AC144521.1	12647	chr3:18568818:+	RBMS3	50285	chr3:29938870:+	ONLY_REF_SPLICE	YES	14	0	0.55	1	0.1319	0.0406	AC144521.1->chr3:18486516-18959184:+,RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+	NCIH2081_LUNG	0.55	1	0.1725	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	LINC01014--KCNMB2	12	8	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	9	268	0.69	0.07	0.1218	0.0812	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH2081_LUNG	0.07	0.69	0.203	FALSE	12	33	18	33	0	FALSE	ACH-000394
NCIH2081_LUNG	MIPEPP3--ABHD12	14	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1421	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	NCIH2081_LUNG	1	1	0.1421	TRUE	64	202	9	44	0	FALSE	ACH-000394
NCIH2081_LUNG	PLCL2--PRSS45	13	3	PLCL2	2852	chr3:16926865:+	PRSS45	19606	chr3:46798119:-	ONLY_REF_SPLICE	YES	4	0	0.8	1	0.1319	0.0304	PLCL2->chr3:16844159-17132086:+,phospholipase_C_like_2,PRSS45->chr3:46783582-46854048:-,protease,_serine_45	NCIH2081_LUNG	0.8	1	0.1623	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1319	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2081_LUNG	1	1	0.1319	TRUE	0	0	0	434	0	FALSE	ACH-000394
NCIH2081_LUNG	UBE2E1--WNT7A	9	14	UBE2E1	2519	chr3:23848912:+	WNT7A	18291	chr3:13916670:-	ONLY_REF_SPLICE	YES	78	0	0.23	1	0.0913	0.1421	{Klijn_CCL:Lung=1},UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,WNT7A->Wnt_family_member_7A,chr3:13857755-13921618:-	NCIH2081_LUNG	0.23	1	0.2334	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MT-CO3--MT-ATP6	5	29	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	3	0.92	0.92	0.0507	0.2943	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2081_LUNG	0.92	0.92	0.345	FALSE	189	492	56	216	0	FALSE	ACH-000394
NCIH2081_LUNG	ZNF852--LZTFL1	12	1	ZNF852	1084	chr3:44552045:-	LZTFL1	17244	chr3:45877276:-	ONLY_REF_SPLICE	YES	0	33	1	0.28	0.1218	0.0101	ZNF852->chr3:44540462-44552128:-,zinc_finger_protein_852,LZTFL1->chr3:45864808-45957534:-,leucine_zipper_transcription_factor_like_1	NCIH2081_LUNG	0.28	1	0.1319	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RPSA--PRSS46	8	16	RPSA	3036	chr3:39450215:+	PRSS46	12313	chr3:46761493:-	ONLY_REF_SPLICE	YES	2600	1	0.01	0.96	0.0812	0.1624	RPSA->chr3:39448180-39454033:+,ribosomal_protein_SA,PRSS46->chr3:46761073-46777919:-,protease,_serine_46	NCIH2081_LUNG	0.01	0.96	0.2436	TRUE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	MT-CO3--MT-ATP6	3	35	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	5	25	0.88	0.6	0.0304	0.3552	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2081_LUNG	0.6	0.88	0.3856	FALSE	189	492	56	216	0	FALSE	ACH-000394
NCIH2081_LUNG	RP11-123O10.4--GRIP1	9	11	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	36	1	0.36	0.0913	0.1116	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2081_LUNG	0.36	1	0.2029	FALSE	93	270	15	244	0	FALSE	ACH-000394
NCIH2081_LUNG	TRANK1--ULK4	11	3	TRANK1	23409	chr3:36884113:-	ULK4	76581	chr3:41439755:-	ONLY_REF_SPLICE	YES	23	1	0.38	0.93	0.1116	0.0304	{Klijn_CCL:Lung=1},TRANK1->chr3:36868311-36986548:-,tetratricopeptide_repeat_and_ankyrin_repeat_containing_1,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	NCIH2081_LUNG	0.38	0.93	0.142	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MT-CO3--MT-ATP6	3	33	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	6	3	0.86	0.92	0.0304	0.3349	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2081_LUNG	0.86	0.92	0.3653	FALSE	189	492	56	216	0	FALSE	ACH-000394
NCIH2081_LUNG	RP11-680G10.1--GSE1	11	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	196	1	0.06	0.1116	0.0101	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2081_LUNG	0.06	1	0.1217	TRUE	465	1949	224	605	0	FALSE	ACH-000394
NCIH2081_LUNG	HSP90AB1--MT-RNR2	11	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1116	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2081_LUNG	1	1	0.1116	FALSE	13	9	0	364	0	FALSE	ACH-000394
NCIH2081_LUNG	MT-CO3--MT-ATP6	4	28	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	3	1	0.91	0.97	0.0406	0.2841	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2081_LUNG	0.91	0.97	0.3247	FALSE	189	492	56	216	0	FALSE	ACH-000394
NCIH2081_LUNG	MGST1--RP11-424M22.3	9	7	MGST1	16905	chr12:16536538:+	RP11-424M22.3	25672	chr12:16726445:+	ONLY_REF_SPLICE	YES	10	0	0.62	1	0.0913	0.071	NEIGHBORS_OVERLAP:+:+:[6529],MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,RP11-424M22.3->chr12:16720345-16726874:+	NCIH2081_LUNG	0.62	1	0.1623	FALSE	0	1	0	6	0	FALSE	ACH-000394
NCIH2081_LUNG	UBE2E2--NUP210	10	3	UBE2E2	3680	chr3:23258803:+	NUP210	15553	chr3:13441361:-	ONLY_REF_SPLICE	YES	20	190	0.39	0.06	0.1015	0.0304	{Klijn_CCL:Lung=1},UBE2E2->chr3:23244511-23633284:+,ubiquitin_conjugating_enzyme_E2_E2,NUP210->chr3:13357737-13461809:-,nucleoporin_210kDa	NCIH2081_LUNG	0.06	0.39	0.1319	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	C15orf57--CBX3	4	26	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	91	49	0.25	0.38	0.0406	0.2638	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2081_LUNG	0.25	0.38	0.3044	TRUE	267	562	48	632	0	FALSE	ACH-000394
NCIH2081_LUNG	RFTN1--PLCL2-AS1	9	5	RFTN1	9245	chr3:16475358:-	PLCL2-AS1	24764	chr3:17085680:-	INCL_NON_REF_SPLICE	YES	27	0	0.34	1	0.0913	0.0507	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PLCL2-AS1->PLCL2_antisense_RNA_1,chr3:17084234-17085684:-	NCIH2081_LUNG	0.34	1	0.142	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MT-CO3--MT-ATP6	3	27	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.94	0.0304	0.274	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2081_LUNG	0.94	1	0.3044	FALSE	189	492	56	216	0	FALSE	ACH-000394
NCIH2081_LUNG	RP11-680G10.1--GSE1	8	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	25	1	0.38	0.0812	0.071	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2081_LUNG	0.38	1	0.1522	TRUE	458	1351	185	561	0	FALSE	ACH-000394
NCIH2081_LUNG	RPSA--PRSS46	7	11	RPSA	2098	chr3:39449277:+	PRSS46	12313	chr3:46761493:-	ONLY_REF_SPLICE	YES	2490	1	0.01	0.95	0.071	0.1116	RPSA->chr3:39448180-39454033:+,ribosomal_protein_SA,PRSS46->chr3:46761073-46777919:-,protease,_serine_46	NCIH2081_LUNG	0.01	0.95	0.1826	TRUE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	MT-TA--MT-TC	9	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0913	0.0101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2081_LUNG	1	1	0.1014	FALSE	462	80	0	856	0	FALSE	ACH-000394
NCIH2081_LUNG	HIGD1A--PLCL2	9	0	HIGD1A	3638	chr3:42827520:-	PLCL2	14598	chr3:17051166:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0913	0	HIGD1A->HIG1_hypoxia_inducible_domain_family_member_1A,chr3:42798669-42846023:-,PLCL2->chr3:16844159-17132086:+,phospholipase_C_like_2	NCIH2081_LUNG	1	1	0.0913	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MT-TA--MT-TC	7	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.071	0.0812	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2081_LUNG	1	1	0.1522	FALSE	462	80	0	856	0	FALSE	ACH-000394
NCIH2081_LUNG	RFTN1--GPD1L	8	3	RFTN1	3399	chr3:16535232:-	GPD1L	32109	chr3:32200475:+	INCL_NON_REF_SPLICE	YES	33	71	0.25	0.13	0.0812	0.0304	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,GPD1L->chr3:32147181-32210205:+,glycerol-3-phosphate_dehydrogenase_1-like	NCIH2081_LUNG	0.13	0.25	0.1116	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RFTN1--GPD1L	6	11	RFTN1	7325	chr3:16513468:-	GPD1L	32002	chr3:32200368:+	ONLY_REF_SPLICE	YES	32	60	0.35	0.22	0.0609	0.1116	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,GPD1L->chr3:32147181-32210205:+,glycerol-3-phosphate_dehydrogenase_1-like	NCIH2081_LUNG	0.22	0.35	0.1725	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MT-ND6--MT-TE	7	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.071	0.0609	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2081_LUNG	1	1	0.1319	FALSE	499	1288	110	792	0	FALSE	ACH-000394
NCIH2081_LUNG	PVT1--SNTB1	8	2	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	47	0	0.18	1	0.0812	0.0203	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH2081_LUNG	0.18	1	0.1015	TRUE	0	0	0	25	0	FALSE	ACH-000394
NCIH2081_LUNG	MT-CO3--MT-ATP6	4	17	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.88	0.0406	0.1725	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2081_LUNG	0.88	1	0.2131	FALSE	189	492	56	216	0	FALSE	ACH-000394
NCIH2081_LUNG	RP11-108K3.1--GLDN	6	8	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	10	1	0.58	0.0609	0.0812	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH2081_LUNG	0.58	1	0.1421	FALSE	0	19	0	46	0	FALSE	ACH-000394
NCIH2081_LUNG	MAF--RP11-679B19.2	6	4	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0.0406	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	NCIH2081_LUNG	1	1	0.1015	TRUE	48	25	3	38	0	FALSE	ACH-000394
NCIH2081_LUNG	TBC1D5--CAPN7	6	4	TBC1D5	12746	chr3:17665341:-	CAPN7	56609	chr3:15253611:+	ONLY_REF_SPLICE	YES	17	20	0.37	0.33	0.0609	0.0406	TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-,CAPN7->calpain_7,chr3:15247659-15294425:+	NCIH2081_LUNG	0.33	0.37	0.1015	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP13-1032I1.7--P4HB	5	7	RP13-1032I1.7	1516	chr17:79669815:-	P4HB	11229	chr17:79805223:-	INCL_NON_REF_SPLICE	YES	45	1923	0.21	0.01	0.0507	0.071	RP13-1032I1.7->chr17:79668354-79670330:-,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	NCIH2081_LUNG	0.01	0.21	0.1217	TRUE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	CMC1--PLCL2	6	2	CMC1	1229	chr3:28283303:+	PLCL2	26372	chr3:17051166:+	ONLY_REF_SPLICE	YES	112	6	0.07	0.57	0.0609	0.0203	CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+,PLCL2->chr3:16844159-17132086:+,phospholipase_C_like_2	NCIH2081_LUNG	0.07	0.57	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MT-CO3--MT-ATP6	6	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.0609	0.0203	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2081_LUNG	0.73	1	0.0812	FALSE	189	492	56	216	0	FALSE	ACH-000394
NCIH2081_LUNG	MT-ND6--MT-TE	6	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0.0203	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2081_LUNG	1	1	0.0812	FALSE	499	1288	110	792	0	FALSE	ACH-000394
NCIH2081_LUNG	MKRN2--SCN10A	3	12	MKRN2	3474	chr3:12611751:+	SCN10A	30407	chr3:38766802:-	INCL_NON_REF_SPLICE	YES	69	0	0.18	1	0.0304	0.1218	MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,SCN10A->chr3:38738293-38835501:-,sodium_voltage-gated_channel_alpha_subunit_10	NCIH2081_LUNG	0.18	1	0.1522	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MKRN2--SCN10A	5	4	MKRN2	3474	chr3:12611751:+	SCN10A	32669	chr3:38763903:-	ONLY_REF_SPLICE	YES	69	4	0.12	0.69	0.0507	0.0406	MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,SCN10A->chr3:38738293-38835501:-,sodium_voltage-gated_channel_alpha_subunit_10	NCIH2081_LUNG	0.12	0.69	0.0913	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP1-34H18.1--NAV3	6	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0609	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH2081_LUNG	1	1	0.0609	TRUE	254	575	65	124	0	FALSE	ACH-000394
NCIH2081_LUNG	ARHGAP35--YIF1B	5	3	ARHGAP35	5826	chr19:47440665:+	YIF1B	22702	chr19:38800283:-	ONLY_REF_SPLICE	YES	58	43	0.12	0.16	0.0507	0.0304	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,YIF1B->Yip1_interacting_factor_homolog_B,_membrane_trafficking_protein,chr19:38795753-38807913:-	NCIH2081_LUNG	0.12	0.16	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	DAZL--DLEC1	5	2	DAZL	10969	chr3:16633557:-	DLEC1	34725	chr3:38149075:+	ONLY_REF_SPLICE	YES	11	0	0.39	1	0.0507	0.0203	DAZL->chr3:16628299-16711813:-,deleted_in_azoospermia_like,DLEC1->chr3:38080696-38165516:+,deleted_in_lung_and_esophageal_cancer_1	NCIH2081_LUNG	0.39	1	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	EDEM1--CNTN4	5	2	EDEM1	9873	chr3:5248958:+	CNTN4	34902	chr3:2861170:+	ONLY_REF_SPLICE	YES	25	7	0.22	0.5	0.0507	0.0203	EDEM1->ER_degradation_enhancing_alpha-mannosidase_like_protein_1,chr3:5229331-5261642:+,CNTN4->Oncogene{Bushman},chr3:2140497-3099645:+,contactin_4	NCIH2081_LUNG	0.22	0.5	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CMTM7--OSBPL10	5	1	CMTM7	2569	chr3:32483505:+	OSBPL10	21067	chr3:31921322:-	ONLY_REF_SPLICE	YES	13	6	0.32	0.5	0.0507	0.0101	CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+,OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10	NCIH2081_LUNG	0.32	0.5	0.0608	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CMTM7--OSBPL10	5	1	CMTM7	6139	chr3:32493965:+	OSBPL10	21067	chr3:31921322:-	ONLY_REF_SPLICE	YES	10	6	0.38	0.5	0.0507	0.0101	CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+,OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10	NCIH2081_LUNG	0.38	0.5	0.0608	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	DLX6-AS1--SHFM1	5	1	DLX6-AS1	1141	chr7:96643237:-	SHFM1	30560	chr7:96324203:-	ONLY_REF_SPLICE	YES	72	1167	0.08	0.01	0.0507	0.0101	DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	NCIH2081_LUNG	0.01	0.08	0.0608	FALSE	0	2	0	4	2	FALSE	ACH-000394
NCIH2081_LUNG	NUP210--MOBP	4	5	NUP210	17642	chr3:13399722:-	MOBP	47726	chr3:39540958:+	ONLY_REF_SPLICE	YES	144	0	0.06	1	0.0406	0.0507	NUP210->chr3:13357737-13461809:-,nucleoporin_210kDa,MOBP->chr3:39508689-39570970:+,myelin-associated_oligodendrocyte_basic_protein	NCIH2081_LUNG	0.06	1	0.0913	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-108K3.1--GLDN	4	5	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	1	5	0.9	0.64	0.0406	0.0507	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH2081_LUNG	0.64	0.9	0.0913	FALSE	1	20	0	46	0	FALSE	ACH-000394
NCIH2081_LUNG	CNTN4--SUMF1	5	0	CNTN4	1166	chr3:2140662:+	SUMF1	53988	chr3:4110429:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0507	0	CNTN4->Oncogene{Bushman},chr3:2140497-3099645:+,contactin_4,SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1	NCIH2081_LUNG	1	1	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	EIF4B--PTMA	5	0	EIF4B	4599	chr12:53412656:+	PTMA	22543	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0	EIF4B->chr12:53399942-53435993:+,eukaryotic_translation_initiation_factor_4B,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH2081_LUNG	1	1	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2081_LUNG	1	1	0.0507	FALSE	13	9	0	364	0	FALSE	ACH-000394
NCIH2081_LUNG	MT-CO3--MT-ATP6	4	4	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	6	0	0.57	1	0.0406	0.0406	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2081_LUNG	0.57	1	0.0812	FALSE	189	492	56	216	0	FALSE	ACH-000394
NCIH2081_LUNG	MT-CO3--MT-ATP6	5	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2081_LUNG	1	1	0.0507	FALSE	189	492	56	216	0	FALSE	ACH-000394
NCIH2081_LUNG	CDKL5--RP11-40F8.2	4	2	CDKL5	4610	chrX:18528974:+	RP11-40F8.2	32676	chrX:22761460:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0406	0.0203	CDKL5->chrX:18443703-18671749:+,cyclin_dependent_kinase_like_5,RP11-40F8.2->chrX:22277914-23311263:-	NCIH2081_LUNG	0.86	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CNOT10--ZNF385D-AS2	1	14	CNOT10	18210	chr3:32778982:+	ZNF385D-AS2	31427	chr3:21998631:+	ONLY_REF_SPLICE	YES	49	0	0.23	1	0.0101	0.1421	CNOT10->CCR4-NOT_transcription_complex_subunit_10,chr3:32726637-32815367:+,ZNF385D-AS2->ZNF385D_antisense_RNA_2,chr3:21984058-22021320:+	NCIH2081_LUNG	0.23	1	0.1522	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MKRN2--SCN10A	3	6	MKRN2	3474	chr3:12611751:+	SCN10A	31545	chr3:38765044:-	ONLY_REF_SPLICE	YES	69	4	0.12	0.69	0.0304	0.0609	MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,SCN10A->chr3:38738293-38835501:-,sodium_voltage-gated_channel_alpha_subunit_10	NCIH2081_LUNG	0.12	0.69	0.0913	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	LARS2--GRM7	4	1	LARS2	23618	chr3:45565600:+	GRM7	56107	chr3:7721736:+	ONLY_REF_SPLICE	YES	21	0	0.19	1	0.0406	0.0101	LARS2->chr3:45429998-45590913:+,leucyl-tRNA_synthetase_2,_mitochondrial,GRM7->chr3:6811688-7783215:+,glutamate_metabotropic_receptor_7	NCIH2081_LUNG	0.19	1	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	NUP210--MOBP	3	5	NUP210	17642	chr3:13399722:-	MOBP	49330	chr3:39543557:+	ONLY_REF_SPLICE	YES	144	0	0.05	1	0.0304	0.0507	NUP210->chr3:13357737-13461809:-,nucleoporin_210kDa,MOBP->chr3:39508689-39570970:+,myelin-associated_oligodendrocyte_basic_protein	NCIH2081_LUNG	0.05	1	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	OXNAD1--UBE2E2	4	1	OXNAD1	4251	chr3:16313229:+	UBE2E2	21817	chr3:23250183:+	ONLY_REF_SPLICE	YES	22	51	0.19	0.09	0.0406	0.0101	OXNAD1->chr3:16306706-16391806:+,oxidoreductase_NAD_binding_domain_containing_1,UBE2E2->chr3:23244511-23633284:+,ubiquitin_conjugating_enzyme_E2_E2	NCIH2081_LUNG	0.09	0.19	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	SCARB1--UBC	4	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	125	36	0.04	0.12	0.0406	0.0101	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH2081_LUNG	0.04	0.12	0.0507	TRUE	55	66	6	101	0	FALSE	ACH-000394
NCIH2081_LUNG	AC123023.1--LHFPL4	4	0	AC123023.1	1065	chr3:34244800:+	LHFPL4	9534	chr3:9547887:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	AC123023.1->chr3:34244736-34310303:+,LHFPL4->chr3:9543481-9595486:-,lipoma_HMGIC_fusion_partner-like_4	NCIH2081_LUNG	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	FANCD2--CMTM6	4	0	FANCD2	35472	chr3:10133936:+	CMTM6	48095	chr3:32533378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	{Klijn_CCL:Lung=1},FANCD2->ArcherDX_panel,Fanconi_anemia_complementation_group_D2,FoundationOne_panel,Oncogene{Bushman},chr3:10068098-10143614:+,CMTM6->CKLF_like_MARVEL_transmembrane_domain_containing_6,chr3:32522804-32544900:-	NCIH2081_LUNG	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MKRN2--SCN10A	1	12	MKRN2	3474	chr3:12611751:+	SCN10A	30404	chr3:38766805:-	ONLY_REF_SPLICE	YES	69	0	0.16	1	0.0101	0.1218	MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,SCN10A->chr3:38738293-38835501:-,sodium_voltage-gated_channel_alpha_subunit_10	NCIH2081_LUNG	0.16	1	0.1319	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2081_LUNG	1	1	0.0406	FALSE	189	492	56	216	0	FALSE	ACH-000394
NCIH2081_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2081_LUNG	1	1	0.0406	FALSE	189	492	56	216	0	FALSE	ACH-000394
NCIH2081_LUNG	MT-ND6--MT-TE	3	4	MT-ND6	1029	chrM:14645:-	MT-TE	4495	chrM:14773:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0.0406	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2081_LUNG	1	1	0.071	FALSE	499	1288	110	792	0	FALSE	ACH-000394
NCIH2081_LUNG	RFTN1--GPD1L	4	0	RFTN1	3399	chr3:16535232:-	GPD1L	32694	chr3:32201060:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,GPD1L->chr3:32147181-32210205:+,glycerol-3-phosphate_dehydrogenase_1-like	NCIH2081_LUNG	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-108K3.1--GLDN	2	8	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	5	1	0.67	0.0203	0.0812	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH2081_LUNG	0.67	1	0.1015	FALSE	0	14	0	30	0	FALSE	ACH-000394
NCIH2081_LUNG	RP11-1L12.3--SLC5A12	3	4	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0304	0.0406	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	NCIH2081_LUNG	0.64	1	0.071	TRUE	3	101	0	60	0	FALSE	ACH-000394
NCIH2081_LUNG	RP11-40F8.2--PHEX	4	0	RP11-40F8.2	3343	chrX:23082155:-	PHEX	14235	chrX:22056587:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	LOCAL_INVERSION:-:+:[8487],RP11-40F8.2->chrX:22277914-23311263:-,PHEX->chrX:22050559-22269427:+,phosphate_regulating_endopeptidase_homolog,_X-linked	NCIH2081_LUNG	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	VPS26B--JAM3	4	0	VPS26B	1701	chr11:134095239:+	JAM3	18424	chr11:134009746:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	NUCLCLUST,LOCAL_REARRANGEMENT:+:[72643],VPS26B->VPS26_retromer_complex_component_B,chr11:134094539-134117686:+,JAM3->chr11:133938820-134021896:+,junctional_adhesion_molecule_3	NCIH2081_LUNG	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	LDLRAD3--PRR5L	3	3	LDLRAD3	5673	chr11:36120011:+	PRR5L	17578	chr11:36317840:+	INCL_NON_REF_SPLICE	NO	33	0	0.15	1	0.0304	0.0304	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	NCIH2081_LUNG	0.15	1	0.0608	FALSE	0	52	1	15	0	FALSE	ACH-000394
NCIH2081_LUNG	RP11-120D5.1--MID1	3	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	28	0.67	0.18	0.0304	0.0304	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2081_LUNG	0.18	0.67	0.0608	FALSE	16	356	14	466	0	FALSE	ACH-000394
NCIH2081_LUNG	SACM1L--TRAK1	3	3	SACM1L	12787	chr3:45765035:+	TRAK1	35739	chr3:42218306:+	ONLY_REF_SPLICE	YES	53	32	0.1	0.16	0.0304	0.0304	SACM1L->SAC1_suppressor_of_actin_mutations_1-like_(yeast),chr3:45730548-45786916:+,TRAK1->chr3:42055294-42267381:+,trafficking_protein,_kinesin_binding_1	NCIH2081_LUNG	0.1	0.16	0.0608	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	IGSF21--LRP8	3	2	IGSF21	9186	chr1:18692191:+	LRP8	38780	chr1:53712728:-	ONLY_REF_SPLICE	YES	0	42	1	0.11	0.0304	0.0203	IGSF21->chr1:18434240-18704977:+,immunoglobin_superfamily_member_21,LRP8->LDL_receptor_related_protein_8,chr1:53711217-53793742:-	NCIH2081_LUNG	0.11	1	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-141M1.3--STARD13	3	2	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	2	0.83	0.71	0.0304	0.0203	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NCIH2081_LUNG	0.71	0.83	0.0507	FALSE	141	264	50	91	0	FALSE	ACH-000394
NCIH2081_LUNG	CDKL5--RP11-40F8.2	3	1	CDKL5	4610	chrX:18528974:+	RP11-40F8.2	32681	chrX:22761455:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0304	0.0101	CDKL5->chrX:18443703-18671749:+,cyclin_dependent_kinase_like_5,RP11-40F8.2->chrX:22277914-23311263:-	NCIH2081_LUNG	0.8	1	0.0405	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CNTN4--LRRFIP2	3	1	CNTN4	1166	chr3:2140662:+	LRRFIP2	51658	chr3:37190529:-	ONLY_REF_SPLICE	YES	8	24	0.33	0.14	0.0304	0.0101	CNTN4->Oncogene{Bushman},chr3:2140497-3099645:+,contactin_4,LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2	NCIH2081_LUNG	0.14	0.33	0.0405	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	5	0	0.44	1	0.0304	0.0101	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2081_LUNG	0.44	1	0.0405	FALSE	189	492	56	216	0	FALSE	ACH-000394
NCIH2081_LUNG	RP11-108K3.1--GLDN	2	5	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	10	0.88	0.41	0.0203	0.0507	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH2081_LUNG	0.41	0.88	0.071	FALSE	0	30	1	55	0	FALSE	ACH-000394
NCIH2081_LUNG	TOPAZ1--STAC	3	1	TOPAZ1	21502	chr3:44364787:+	STAC	35405	chr3:36534643:+	ONLY_REF_SPLICE	YES	0	16	1	0.2	0.0304	0.0101	TOPAZ1->chr3:44283378-44373590:+,testis_and_ovary_specific_PAZ_domain_containing_1,STAC->SH3_and_cysteine_rich_domain,chr3:36421836-36589499:+	NCIH2081_LUNG	0.2	1	0.0405	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CMTM8--CMTM7	3	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	NCIH2081_LUNG	1	1	0.0304	FALSE	118	557	29	88	0	FALSE	ACH-000394
NCIH2081_LUNG	ELF3--IPO9	3	0	ELF3	4774	chr1:201980846:+	IPO9	41297	chr1:201851404:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	ELF3->E74_like_ETS_transcription_factor_3,chr1:201977073-201986316:+,IPO9->chr1:201798269-201853422:+,importin_9	NCIH2081_LUNG	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2081_LUNG	1	1	0.0304	FALSE	499	1288	110	792	0	FALSE	ACH-000394
NCIH2081_LUNG	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2081_LUNG	1	1	0.0304	FALSE	292	1546	117	613	0	FALSE	ACH-000394
NCIH2081_LUNG	RARB--NR1D2	3	0	RARB	5103	chr3:25502832:+	NR1D2	28045	chr3:24018714:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	HGNC_GENEFAM,PROTCLUST,RARB->Oncogene{Bushman},chr3:25215823-25639423:+,retinoic_acid_receptor_beta,NR1D2->chr3:23986751-24022109:+,nuclear_receptor_subfamily_1_group_D_member_2	NCIH2081_LUNG	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RNF13--RP11-167H9.4	3	0	RNF13	12719	chr3:149639014:+	RP11-167H9.4	22223	chr3:149842725:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	NEIGHBORS[77075],RNF13->chr3:149530495-149679926:+,ring_finger_protein_13,RP11-167H9.4->chr3:149757001-149931513:+	NCIH2081_LUNG	1	1	0.0304	FALSE	4	2	0	3	0	FALSE	ACH-000394
NCIH2081_LUNG	RP11-108K3.1--GLDN	1	8	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	0	9	1	0.5	0.0101	0.0812	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH2081_LUNG	0.5	1	0.0913	FALSE	0	14	0	30	0	FALSE	ACH-000394
NCIH2081_LUNG	SCML2--RP11-40F8.2	3	0	SCML2	6459	chrX:18338452:-	RP11-40F8.2	25381	chrX:23082238:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	SCML2->chrX:18257434-18372847:-,sex_comb_on_midleg-like_2_(Drosophila),RP11-40F8.2->chrX:22277914-23311263:-	NCIH2081_LUNG	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	ZNF852--LZTFL1	2	4	ZNF852	2230	chr3:44544457:-	LZTFL1	16119	chr3:45879543:-	ONLY_REF_SPLICE	YES	8	10	0.43	0.38	0.0203	0.0406	ZNF852->chr3:44540462-44552128:-,zinc_finger_protein_852,LZTFL1->chr3:45864808-45957534:-,leucine_zipper_transcription_factor_like_1	NCIH2081_LUNG	0.38	0.43	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	AC144521.1--RBMS3	2	3	AC144521.1	12647	chr3:18568818:+	RBMS3	55040	chr3:29977577:+	ONLY_REF_SPLICE	YES	14	3	0.26	0.62	0.0203	0.0304	AC144521.1->chr3:18486516-18959184:+,RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+	NCIH2081_LUNG	0.26	0.62	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CMC1--PLCL2	2	3	CMC1	3625	chr3:28304871:+	PLCL2	26372	chr3:17051166:+	ONLY_REF_SPLICE	YES	111	6	0.04	0.45	0.0203	0.0304	CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+,PLCL2->chr3:16844159-17132086:+,phospholipase_C_like_2	NCIH2081_LUNG	0.04	0.45	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CDKL5--RP11-40F8.2	2	2	CDKL5	4610	chrX:18528974:+	RP11-40F8.2	31585	chrX:22962265:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0203	0.0203	CDKL5->chrX:18443703-18671749:+,cyclin_dependent_kinase_like_5,RP11-40F8.2->chrX:22277914-23311263:-	NCIH2081_LUNG	0.8	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	HIGD1A--BTD	2	2	HIGD1A	3638	chr3:42827520:-	BTD	17290	chr3:15676931:+	ONLY_REF_SPLICE	YES	521	12	0.01	0.25	0.0203	0.0203	HIGD1A->HIG1_hypoxia_inducible_domain_family_member_1A,chr3:42798669-42846023:-,BTD->biotinidase,chr3:15642848-15687329:+	NCIH2081_LUNG	0.01	0.25	0.0406	FALSE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	LDLRAD3--PRR5L	2	2	LDLRAD3	5673	chr11:36120011:+	PRR5L	30278	chr11:36415396:+	ONLY_REF_SPLICE	YES	33	0	0.11	1	0.0203	0.0203	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	NCIH2081_LUNG	0.11	1	0.0406	FALSE	12	80	1	10	0	FALSE	ACH-000394
NCIH2081_LUNG	LRRC49--THSD4	2	2	LRRC49	17473	chr15:71211532:+	THSD4	39836	chr15:71704026:+	ONLY_REF_SPLICE	YES	23	1	0.15	0.8	0.0203	0.0203	NEIGHBORS[46877],LRRC49->chr15:71145578-71342414:+,leucine_rich_repeat_containing_49,THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4	NCIH2081_LUNG	0.15	0.8	0.0406	FALSE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	MAST2--DNAJC16	2	2	MAST2	5929	chr1:46348067:+	DNAJC16	35608	chr1:15860732:+	ONLY_REF_SPLICE	YES	58	5	0.06	0.44	0.0203	0.0203	MAST2->chr1:46252659-46501796:+,microtubule_associated_serine/threonine_kinase_2,DNAJC16->DnaJ_heat_shock_protein_family_(Hsp40)_member_C16,chr1:15853308-15918874:+	NCIH2081_LUNG	0.06	0.44	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TBC1D5--CAPN7	1	6	TBC1D5	13947	chr3:17664140:-	CAPN7	55488	chr3:15252309:+	ONLY_REF_SPLICE	YES	16	21	0.3	0.25	0.0101	0.0609	TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-,CAPN7->calpain_7,chr3:15247659-15294425:+	NCIH2081_LUNG	0.25	0.3	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TBC1D5--CAPN7	2	2	TBC1D5	2479	chr3:17783973:-	CAPN7	56609	chr3:15253611:+	ONLY_REF_SPLICE	YES	13	20	0.24	0.17	0.0203	0.0203	TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-,CAPN7->calpain_7,chr3:15247659-15294425:+	NCIH2081_LUNG	0.17	0.24	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	UBE2E1--DLEC1	2	2	UBE2E1	2519	chr3:23848912:+	DLEC1	32715	chr3:38149075:+	ONLY_REF_SPLICE	YES	78	0	0.05	1	0.0203	0.0203	UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,DLEC1->chr3:38080696-38165516:+,deleted_in_lung_and_esophageal_cancer_1	NCIH2081_LUNG	0.05	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	VTI1A--RP11-57H14.3	2	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	23	0	0.15	1	0.0203	0.0203	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH2081_LUNG	0.15	1	0.0406	FALSE	272	151	14	158	0	FALSE	ACH-000394
NCIH2081_LUNG	CMTM7--OSBPL10	2	1	CMTM7	2569	chr3:32483505:+	OSBPL10	22492	chr3:31918004:-	ONLY_REF_SPLICE	NO	13	9	0.19	0.25	0.0203	0.0101	CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+,OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10	NCIH2081_LUNG	0.19	0.25	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MAST2--DNAJC16	1	5	MAST2	9343	chr1:46425149:+	DNAJC16	34423	chr1:15855583:+	ONLY_REF_SPLICE	YES	27	2	0.18	0.75	0.0101	0.0507	MAST2->chr1:46252659-46501796:+,microtubule_associated_serine/threonine_kinase_2,DNAJC16->DnaJ_heat_shock_protein_family_(Hsp40)_member_C16,chr1:15853308-15918874:+	NCIH2081_LUNG	0.18	0.75	0.0608	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MYO9A--PKM	2	1	MYO9A	1898	chr15:72410021:-	PKM	78780	chr15:72499618:-	ONLY_REF_SPLICE	NO	9	3447	0.25	0	0.0203	0.0101	LOCAL_REARRANGEMENT:-:[80452],MYO9A->chr15:72114632-72410918:-,myosin_IXA,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	NCIH2081_LUNG	0	0.25	0.0304	FALSE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	NOC4L--FBRSL1	2	1	NOC4L	2218	chr12:132630210:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	65	59	0.04	0.05	0.0203	0.0101	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	NCIH2081_LUNG	0.04	0.05	0.0304	TRUE	0	1	0	10	0	FALSE	ACH-000394
NCIH2081_LUNG	PFDN1--CTC-329D1.2	2	1	PFDN1	4645	chr5:139661034:-	CTC-329D1.2	12414	chr5:139750767:-	ONLY_REF_SPLICE	YES	122	0	0.02	1	0.0203	0.0101	LOCAL_REARRANGEMENT:-:[67770],PFDN1->chr5:139624624-139682706:-,prefoldin_subunit_1,CTC-329D1.2->chr5:139750476-139780952:-	NCIH2081_LUNG	0.02	1	0.0304	TRUE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	PLCL2--PRSS45	2	1	PLCL2	2852	chr3:16926865:+	PRSS45	21587	chr3:46796138:-	ONLY_REF_SPLICE	YES	4	9	0.43	0.25	0.0203	0.0101	PLCL2->chr3:16844159-17132086:+,phospholipase_C_like_2,PRSS45->chr3:46783582-46854048:-,protease,_serine_45	NCIH2081_LUNG	0.25	0.43	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RARB--STT3B	2	1	RARB	7449	chr3:25542814:+	STT3B	19526	chr3:31617888:+	ONLY_REF_SPLICE	YES	2	30	0.6	0.09	0.0203	0.0101	RARB->Oncogene{Bushman},chr3:25215823-25639423:+,retinoic_acid_receptor_beta,STT3B->STT3B,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr3:31574130-31679112:+	NCIH2081_LUNG	0.09	0.6	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	SPAG16--VWC2L	2	1	SPAG16	24747	chr2:215013990:+	VWC2L	37163	chr2:215301353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0.0101	NEIGHBORS[564],SPAG16->chr2:214149113-215275225:+,sperm_associated_antigen_16,VWC2L->chr2:215275789-215443683:+,von_Willebrand_factor_C_domain_containing_protein_2-like	NCIH2081_LUNG	1	1	0.0304	FALSE	3	0	0	4	0	FALSE	ACH-000394
NCIH2081_LUNG	UBE2E1--DLEC1	1	5	UBE2E1	6001	chr3:23853001:+	DLEC1	32715	chr3:38149075:+	ONLY_REF_SPLICE	YES	112	0	0.05	1	0.0101	0.0507	UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,DLEC1->chr3:38080696-38165516:+,deleted_in_lung_and_esophageal_cancer_1	NCIH2081_LUNG	0.05	1	0.0608	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	ZCWPW2--LRRC3B	2	1	ZCWPW2	6932	chr3:28476760:+	LRRC3B	28397	chr3:26751004:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0203	0.0101	ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2,LRRC3B->chr3:26664297-26752267:+,leucine_rich_repeat_containing_3B	NCIH2081_LUNG	0.75	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	ZDHHC14--ARID1B	2	1	ZDHHC14	2134	chr6:157803298:+	ARID1B	41719	chr6:157495142:+	ONLY_REF_SPLICE	YES	22	55	0.12	0.05	0.0203	0.0101	ZDHHC14->Oncogene{Bushman},chr6:157802165-158099178:+,zinc_finger_DHHC-type_containing_14,ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+	NCIH2081_LUNG	0.05	0.12	0.0304	TRUE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	ABCC5--HDAC2	2	0	ABCC5	8141	chr3:183705558:-	HDAC2	53673	chr6:114270424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ABCC5->ATP_binding_cassette_subfamily_C_member_5,chr3:183637722-183735803:-,HDAC2->Oncogene{Bushman},chr6:114254192-114332472:-,histone_deacetylase_2	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	AC027119.1--ZNF385D	2	0	AC027119.1	1674	chr3:6005202:+	ZNF385D	17283	chr3:21606176:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	AC027119.1->chr3:6004529-6165807:+,ZNF385D->chr3:21459915-22414812:-,zinc_finger_protein_385D	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	AC144521.1--RBMS3	1	4	AC144521.1	17342	chr3:18589685:+	RBMS3	50285	chr3:29938870:+	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0101	0.0406	AC144521.1->chr3:18486516-18959184:+,RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+	NCIH2081_LUNG	0.56	1	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	ARHGEF18--MROH7	2	0	ARHGEF18	1135	chr19:7460133:+	MROH7	31296	chr1:55130840:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ARHGEF18->Rho/Rac_guanine_nucleotide_exchange_factor_18,chr19:7459999-7537363:+,MROH7->chr1:55107463-55175939:+,maestro_heat_like_repeat_family_member_7	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CALM2--DAZAP1	2	0	CALM2	1161	chr2:47403580:-	DAZAP1	18145	chr19:1416456:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	CALM2--GNAS	2	0	CALM2	1161	chr2:47403580:-	GNAS	30774	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=2,Pituitary=1},CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH2081_LUNG	1	1	0.0203	TRUE	0	2	0	2	1	TRUE	ACH-000394
NCIH2081_LUNG	CSNK1E--DMC1	2	0	CSNK1E	3868	chr22:38757404:-	DMC1	36321	chr22:38917729:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-,DMC1->DNA_meiotic_recombinase_1,chr22:38914954-38966291:-	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	DBF4B--UBTF	2	0	DBF4B	2902	chr17:42800390:+	UBTF	23874	chr17:42295664:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+,UBTF->chr17:42282401-42298994:-,upstream_binding_transcription_factor,_RNA_polymerase_I	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	2	0	TRUE	ACH-000394
NCIH2081_LUNG	EZH2--CUL1	2	0	EZH2	1158	chr7:148581256:-	CUL1	26755	chr7:148427054:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_INVERSION:-:+:[6347],EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit,CUL1->Oncogene{Bushman},chr7:148395006-148498128:+,cullin_1	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	2	0	TRUE	ACH-000394
NCIH2081_LUNG	FOXJ3--RBM4	2	0	FOXJ3	1819	chr1:42800730:-	RBM4	26895	chr11:66407171:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	GDAP1--RP11-758M4.1	1	4	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	NO	122	2	0.04	0.71	0.0101	0.0406	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH2081_LUNG	0.04	0.71	0.0507	TRUE	7	28	0	43	0	FALSE	ACH-000394
NCIH2081_LUNG	HDHD1--RP11-268G12.1	1	4	HDHD1	6377	chrX:6995261:-	RP11-268G12.1	20505	chrX:27204774:-	ONLY_REF_SPLICE	YES	11	9	0.31	0.36	0.0101	0.0406	HDHD1->chrX:6966961-7066231:-,RP11-268G12.1->chrX:27193037-27417114:-	NCIH2081_LUNG	0.31	0.36	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	MYLK-AS1--YAF2	2	0	MYLK-AS1	1253	chr3:123304641:+	YAF2	16620	chr12:42604421:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	MYLK-AS1->MYLK_antisense_RNA_1,chr3:123304389-123363415:+,YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-120D5.1--CA5B	2	0	RP11-120D5.1	4510	chrX:11074056:-	CA5B	22215	chrX:15782701:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	RP11-120D5.1->chrX:10865996-11129261:-,CA5B->carbonic_anhydrase_5B,chrX:15706953-15805747:+	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-40F8.2--PHEX	2	0	RP11-40F8.2	3343	chrX:23082155:-	PHEX	15304	chrX:22065168:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_INVERSION:-:+:[8487],RP11-40F8.2->chrX:22277914-23311263:-,PHEX->chrX:22050559-22269427:+,phosphate_regulating_endopeptidase_homolog,_X-linked	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	SCML2--RP11-40F8.2	2	0	SCML2	4322	chrX:18343027:-	RP11-40F8.2	25381	chrX:23082238:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	SCML2->chrX:18257434-18372847:-,sex_comb_on_midleg-like_2_(Drosophila),RP11-40F8.2->chrX:22277914-23311263:-	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TM9SF3--C9orf3	2	0	TM9SF3	7279	chr10:98319416:-	C9orf3	56127	chr9:97822976:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	TM9SF3->chr10:98277866-98347209:-,transmembrane_9_superfamily_member_3,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TXNIP--ARPP19	2	0	TXNIP	1584	chr1:145439052:+	ARPP19	9149	chr15:52861099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein,ARPP19->cAMP_regulated_phosphoprotein_19kDa,chr15:52839242-52862080:-	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	ZNF407--CNDP1	2	0	ZNF407	1068	chr18:72265173:+	CNDP1	40555	chr18:72247366:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_REARRANGEMENT:+:[10658],ZNF407->chr18:72265106-72777627:+,zinc_finger_protein_407,CNDP1->carnosine_dipeptidase_1_(metallopeptidase_M20_family),chr18:72201675-72254448:+	NCIH2081_LUNG	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	LINC01014--KCNMB2	1	3	LINC01014	1175	chr3:178137163:+	KCNMB2	13188	chr3:178542346:+	ONLY_REF_SPLICE	YES	9	292	0.31	0.01	0.0101	0.0304	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH2081_LUNG	0.01	0.31	0.0405	FALSE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	LRRFIP2--NEK10	1	3	LRRFIP2	2621	chr3:37217551:-	NEK10	84367	chr3:27161359:-	ONLY_REF_SPLICE	YES	49	0	0.08	1	0.0101	0.0304	LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2,NEK10->NIMA_related_kinase_10,chr3:27151576-27410951:-	NCIH2081_LUNG	0.08	1	0.0405	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TBC1D5--CAPN7	1	3	TBC1D5	9502	chr3:17704482:-	CAPN7	56609	chr3:15253611:+	ONLY_REF_SPLICE	YES	18	20	0.18	0.17	0.0101	0.0304	TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-,CAPN7->calpain_7,chr3:15247659-15294425:+	NCIH2081_LUNG	0.17	0.18	0.0405	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	TIMM23--RP11-464F9.1	1	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	25333	chr10:75457478:-	ONLY_REF_SPLICE	YES	135	0	0.03	1	0.0101	0.0304	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2081_LUNG	0.03	1	0.0405	TRUE	3	0	0	2	0	FALSE	ACH-000394
NCIH2081_LUNG	AGMO--DGKB	1	2	AGMO	13591	chr7:15405139:-	DGKB	24054	chr7:14881075:-	ONLY_REF_SPLICE	YES	91	71	0.03	0.04	0.0101	0.0203	AGMO->alkylglycerol_monooxygenase,chr7:15239943-15601640:-,DGKB->chr7:14184674-15014402:-,diacylglycerol_kinase_beta	NCIH2081_LUNG	0.03	0.04	0.0304	TRUE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	CMTM6--CHL1	1	2	CMTM6	2978	chr3:32533202:-	CHL1	13911	chr3:254887:+	ONLY_REF_SPLICE	YES	45	0	0.06	1	0.0101	0.0203	CMTM6->CKLF_like_MARVEL_transmembrane_domain_containing_6,chr3:32522804-32544900:-,CHL1->Oncogene{Bushman},cell_adhesion_molecule_L1_like,chr3:238279-451090:+	NCIH2081_LUNG	0.06	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	HDHD1--RP11-268G12.1	1	2	HDHD1	3426	chrX:7023661:-	RP11-268G12.1	18357	chrX:27354610:-	ONLY_REF_SPLICE	NO	22	7	0.12	0.3	0.0101	0.0203	HDHD1->chrX:6966961-7066231:-,RP11-268G12.1->chrX:27193037-27417114:-	NCIH2081_LUNG	0.12	0.3	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	7	28	0.3	0.1	0.0101	0.0203	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2081_LUNG	0.1	0.3	0.0304	FALSE	0	48	1	163	0	FALSE	ACH-000394
NCIH2081_LUNG	SYN2--TRANK1	1	2	SYN2	1553	chr3:12046428:+	TRANK1	32731	chr3:36915787:-	ONLY_REF_SPLICE	YES	2	19	0.6	0.14	0.0101	0.0203	SYN2->chr3:12045876-12232900:+,synapsin_II,TRANK1->chr3:36868311-36986548:-,tetratricopeptide_repeat_and_ankyrin_repeat_containing_1	NCIH2081_LUNG	0.14	0.6	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	AGMO--DGKB	1	1	AGMO	13591	chr7:15405139:-	DGKB	33048	chr7:14733819:-	ONLY_REF_SPLICE	NO	91	100	0.02	0.02	0.0101	0.0101	AGMO->alkylglycerol_monooxygenase,chr7:15239943-15601640:-,DGKB->chr7:14184674-15014402:-,diacylglycerol_kinase_beta	NCIH2081_LUNG	0.02	0.02	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	CMTM7--OSBPL10	1	1	CMTM7	6139	chr3:32493965:+	OSBPL10	22492	chr3:31918004:-	ONLY_REF_SPLICE	YES	10	9	0.17	0.18	0.0101	0.0101	CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+,OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10	NCIH2081_LUNG	0.17	0.18	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	COX7A2L--KCNG3	1	1	COX7A2L	8717	chr2:42588230:-	KCNG3	21766	chr2:42671719:-	ONLY_REF_SPLICE	NO	376	11	0.01	0.15	0.0101	0.0101	LOCAL_REARRANGEMENT:-:[16929],COX7A2L->chr2:42560686-42652228:-,cytochrome_c_oxidase_subunit_7A2_like,KCNG3->chr2:42669157-42721237:-,potassium_voltage-gated_channel_modifier_subfamily_G_member_3	NCIH2081_LUNG	0.01	0.15	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	CSNK1E--DDX17	1	1	CSNK1E	2706	chr22:38776375:-	DDX17	27371	chr22:38897285:-	ONLY_REF_SPLICE	YES	15	325	0.12	0.01	0.0101	0.0101	LOCAL_REARRANGEMENT:-:[84918],CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-,DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-	NCIH2081_LUNG	0.01	0.12	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	CTDSPL2--CASC4	1	1	CTDSPL2	1539	chr15:44719970:+	CASC4	38385	chr15:44671888:+	ONLY_REF_SPLICE	YES	137	132	0.01	0.01	0.0101	0.0101	LOCAL_REARRANGEMENT:+:[11476],CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+	NCIH2081_LUNG	0.01	0.01	0.0202	FALSE	0	0	0	4	0	FALSE	ACH-000394
NCIH2081_LUNG	DLX6-AS1--SLC25A13	1	1	DLX6-AS1	2620	chr7:96641137:-	SLC25A13	30300	chr7:95838289:-	ONLY_REF_SPLICE	YES	168	159	0.01	0.01	0.0101	0.0101	DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-,SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13	NCIH2081_LUNG	0.01	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	DNAJC1--NEBL	1	1	DNAJC1	2659	chr10:22217969:-	NEBL	52726	chr10:21101869:-	ONLY_REF_SPLICE	NO	41	29	0.05	0.06	0.0101	0.0101	DNAJC1->DnaJ_heat_shock_protein_family_(Hsp40)_member_C1,chr10:22045466-22292698:-,NEBL->chr10:21068902-21463116:-,nebulette	NCIH2081_LUNG	0.05	0.06	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	DTL--PPP2R5A	1	1	DTL	13203	chr1:212254092:+	PPP2R5A	28627	chr1:212502477:+	ONLY_REF_SPLICE	YES	98	39	0.02	0.05	0.0101	0.0101	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	NCIH2081_LUNG	0.02	0.05	0.0202	TRUE	0	1	0	3	1	FALSE	ACH-000394
NCIH2081_LUNG	HNRNPC--TNNT1	1	1	HNRNPC	5078	chr14:21731470:-	TNNT1	22771	chr19:55658075:-	ONLY_REF_SPLICE	YES	1472	193	0	0.01	0.0101	0.0101	HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2),TNNT1->chr19:55644162-55660722:-,troponin_T1,_slow_skeletal_type	NCIH2081_LUNG	0	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	KCNMB2--LINC01014	1	1	KCNMB2	3867	chr3:178276772:+	LINC01014	17666	chr3:178174402:+	ONLY_REF_SPLICE	YES	183	15	0.01	0.12	0.0101	0.0101	NEIGHBORS_OVERLAP:+:+:[38108],KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2,LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014	NCIH2081_LUNG	0.01	0.12	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	KIF15--CLASP2	1	1	KIF15	4288	chr3:44819683:+	CLASP2	65871	chr3:33633988:-	ONLY_REF_SPLICE	YES	15	32	0.12	0.06	0.0101	0.0101	KIF15->chr3:44803209-44914868:+,kinesin_family_member_15,CLASP2->chr3:33537737-33759848:-,cytoplasmic_linker_associated_protein_2	NCIH2081_LUNG	0.06	0.12	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	KLC1--APOPT1	1	1	KLC1	2407	chr14:104095831:+	APOPT1	31803	chr14:104053611:+	ONLY_REF_SPLICE	YES	536	182	0	0.01	0.0101	0.0101	PROTCLUST,NEIGHBORS_OVERLAP:+:+:[44561],KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+	NCIH2081_LUNG	0	0.01	0.0202	FALSE	0	0	0	3	0	FALSE	ACH-000394
NCIH2081_LUNG	MGST1--RP11-424M22.3	1	1	MGST1	5873	chr12:16507204:+	RP11-424M22.3	25672	chr12:16726445:+	ONLY_REF_SPLICE	YES	362	0	0.01	1	0.0101	0.0101	NEIGHBORS_OVERLAP:+:+:[6529],MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,RP11-424M22.3->chr12:16720345-16726874:+	NCIH2081_LUNG	0.01	1	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	NOC4L--FBRSL1	1	1	NOC4L	2218	chr12:132630210:+	FBRSL1	23658	chr12:133144067:+	ONLY_REF_SPLICE	YES	65	156	0.03	0.01	0.0101	0.0101	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	NCIH2081_LUNG	0.01	0.03	0.0202	FALSE	2	2	0	6	0	FALSE	ACH-000394
NCIH2081_LUNG	NOC4L--FBRSL1	1	1	NOC4L	5448	chr12:132633440:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	62	59	0.03	0.03	0.0101	0.0101	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	NCIH2081_LUNG	0.03	0.03	0.0202	TRUE	4	9	0	12	0	FALSE	ACH-000394
NCIH2081_LUNG	PRRC2C--SLC19A2	1	1	PRRC2C	1224	chr1:171454874:+	SLC19A2	47919	chr1:169446995:-	ONLY_REF_SPLICE	YES	254	66	0.01	0.03	0.0101	0.0101	PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C,SLC19A2->chr1:169433147-169455241:-,solute_carrier_family_19_member_2	NCIH2081_LUNG	0.01	0.03	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	RAB3B--EYA3	1	1	RAB3B	2441	chr1:52442562:-	EYA3	39812	chr1:28304985:-	ONLY_REF_SPLICE	NO	244	35	0.01	0.05	0.0101	0.0101	RAB3B->RAB3B,_member_RAS_oncogene_family,chr1:52373628-52456436:-,EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-	NCIH2081_LUNG	0.01	0.05	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	RNF212--CTBP1	1	1	RNF212	6789	chr4:1090553:-	CTBP1	26714	chr4:1232125:-	ONLY_REF_SPLICE	YES	31	376	0.06	0.01	0.0101	0.0101	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[97886],RNF212->chr4:1050038-1107350:-,ring_finger_protein_212,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH2081_LUNG	0.01	0.06	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000394
NCIH2081_LUNG	STAC--TOPAZ1	1	1	STAC	8411	chr3:36527741:+	TOPAZ1	28190	chr3:44310708:+	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.0101	0.0101	STAC->SH3_and_cysteine_rich_domain,chr3:36421836-36589499:+,TOPAZ1->chr3:44283378-44373590:+,testis_and_ovary_specific_PAZ_domain_containing_1	NCIH2081_LUNG	0.11	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	SYN2--TRANK1	1	1	SYN2	1553	chr3:12046428:+	TRANK1	33902	chr3:36905971:-	ONLY_REF_SPLICE	NO	2	12	0.5	0.14	0.0101	0.0101	SYN2->chr3:12045876-12232900:+,synapsin_II,TRANK1->chr3:36868311-36986548:-,tetratricopeptide_repeat_and_ankyrin_repeat_containing_1	NCIH2081_LUNG	0.14	0.5	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000394
NCIH2081_LUNG	ZADH2--TSHZ1	1	1	ZADH2	1499	chr18:72920805:-	TSHZ1	22211	chr18:72997403:+	ONLY_REF_SPLICE	YES	165	100	0.01	0.02	0.0101	0.0101	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Brain_-_Hypothalamus=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[1407],ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2,TSHZ1->chr18:72922710-73001905:+,teashirt_zinc_finger_homeobox_1	NCIH2081_LUNG	0.01	0.02	0.0202	FALSE	0	4	0	5	1	FALSE	ACH-000394
NCIH2081_LUNG	ZNF852--LZTFL1	1	1	ZNF852	1084	chr3:44552045:-	LZTFL1	16123	chr3:45879539:-	ONLY_REF_SPLICE	YES	0	9	1	0.18	0.0101	0.0101	ZNF852->chr3:44540462-44552128:-,zinc_finger_protein_852,LZTFL1->chr3:45864808-45957534:-,leucine_zipper_transcription_factor_like_1	NCIH2081_LUNG	0.18	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000394
HS255T_FIBROBLAST	MT-ND6--MT-ND5	183	15	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	2874	1	0.06	1.951	0.1599	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS255T_FIBROBLAST	0.06	1	2.1109	FALSE	101	855	57	72	0	FALSE	ACH-000199
HS255T_FIBROBLAST	TIMM23B--LINC00843	117	38	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2474	0.4051	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS255T_FIBROBLAST	1	1	1.6525	TRUE	508	994	45	981	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-TE	98	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	1.0448	0.032	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS255T_FIBROBLAST	0.98	1	1.0768	FALSE	499	1288	110	792	0	FALSE	ACH-000199
HS255T_FIBROBLAST	TIMM23--RP11-464F9.1	65	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	156	4	0.31	0.95	0.693	0.0533	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS255T_FIBROBLAST	0.31	0.95	0.7463	TRUE	519	3926	326	965	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-TA--MT-TC	62	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.661	0.096	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS255T_FIBROBLAST	1	1	0.757	FALSE	462	80	0	856	0	FALSE	ACH-000199
HS255T_FIBROBLAST	RP11-680G10.1--GSE1	55	23	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.5864	0.2452	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS255T_FIBROBLAST	1	1	0.8316	TRUE	458	1351	185	561	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-TE	50	22	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	8	0	0.9	1	0.5331	0.2345	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS255T_FIBROBLAST	0.9	1	0.7676	FALSE	499	1288	110	792	0	FALSE	ACH-000199
HS255T_FIBROBLAST	OR51S1--TP53I11	49	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5224	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HS255T_FIBROBLAST	1	1	0.5224	TRUE	402	216	10	229	0	FALSE	ACH-000199
HS255T_FIBROBLAST	RP11-680G10.1--GSE1	42	14	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	16	1	0.78	0.4478	0.1493	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS255T_FIBROBLAST	0.78	1	0.5971	TRUE	465	1949	224	605	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-TE	38	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.4051	0.032	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS255T_FIBROBLAST	0.95	1	0.4371	FALSE	499	1288	110	792	0	FALSE	ACH-000199
HS255T_FIBROBLAST	COL1A1--COL6A2	33	0	COL1A1	5797	chr17:48273978:-	COL6A2	36137	chr21:47544799:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3518	0	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS255T_FIBROBLAST	1	1	0.3518	TRUE	0	0	0	6	0	TRUE	ACH-000199
HS255T_FIBROBLAST	KANSL1--ARL17B	27	18	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	13	21	0.78	0.68	0.2879	0.1919	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HS255T_FIBROBLAST	0.68	0.78	0.4798	TRUE	181	1564	124	196	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-ND5	25	19	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	5721	1	0.01	0.2665	0.2026	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS255T_FIBROBLAST	0.01	1	0.4691	FALSE	101	855	57	72	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-ND5	24	3	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	3928	2840	0.01	0.01	0.2559	0.032	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS255T_FIBROBLAST	0.01	0.01	0.2879	FALSE	101	855	57	72	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-ND5	20	18	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	5445	1	0.01	0.2132	0.1919	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS255T_FIBROBLAST	0.01	1	0.4051	FALSE	101	855	57	72	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-TE	16	31	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	8	0	0.85	1	0.1706	0.3305	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS255T_FIBROBLAST	0.85	1	0.5011	FALSE	499	1288	110	792	0	FALSE	ACH-000199
HS255T_FIBROBLAST	COL12A1--COL1A1	20	3	COL12A1	59327	chr6:75797359:-	COL1A1	69301	chr17:48275118:-	INCL_NON_REF_SPLICE	NO	1437	7033	0.02	0	0.2132	0.032	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,HGNC_GENEFAM,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS255T_FIBROBLAST	0	0.02	0.2452	FALSE	0	0	0	4	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-ND5	17	14	MT-ND6	1462	chrM:14212:-	MT-ND5	6206	chrM:14017:+	INCL_NON_REF_SPLICE	YES	2	4878	0.94	0.01	0.1812	0.1493	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS255T_FIBROBLAST	0.01	0.94	0.3305	FALSE	101	855	57	72	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-ND5	16	15	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	2856	1	0.01	0.1706	0.1599	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS255T_FIBROBLAST	0.01	1	0.3305	FALSE	101	855	57	72	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-ND5	15	7	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	1	850	0.96	0.03	0.1599	0.0746	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS255T_FIBROBLAST	0.03	0.96	0.2345	FALSE	101	855	57	72	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-ND5	14	11	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	7	2892	0.78	0.01	0.1493	0.1173	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS255T_FIBROBLAST	0.01	0.78	0.2666	FALSE	101	855	57	72	0	FALSE	ACH-000199
HS255T_FIBROBLAST	RP11-444D3.1--SOX5	16	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1706	0.032	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS255T_FIBROBLAST	1	1	0.2026	TRUE	477	1352	189	275	0	FALSE	ACH-000199
HS255T_FIBROBLAST	IGFBP5--MT-ND5	11	16	IGFBP5	8789	chr2:217538007:-	MT-ND5	13686	chrM:13054:+	INCL_NON_REF_SPLICE	YES	15613	7343	0	0	0.1173	0.1706	IGFBP5->Oncogene{Bushman},chr2:217536828-217560248:-,insulin_like_growth_factor_binding_protein_5,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS255T_FIBROBLAST	0	0	0.2879	FALSE	0	0	0	1	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-TE	10	20	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.1066	0.2132	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS255T_FIBROBLAST	0.94	1	0.3198	FALSE	499	1288	110	792	0	FALSE	ACH-000199
HS255T_FIBROBLAST	C15orf57--CBX3	11	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	29	12	0.43	0.65	0.1173	0.1173	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS255T_FIBROBLAST	0.43	0.65	0.2346	TRUE	267	562	48	632	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-TE	4	39	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	5	0	0.9	1	0.0426	0.4158	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS255T_FIBROBLAST	0.9	1	0.4584	FALSE	499	1288	110	792	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-TE	6	30	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	8	0	0.82	1	0.064	0.3198	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS255T_FIBROBLAST	0.82	1	0.3838	FALSE	499	1288	110	792	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-TA--MT-TC	11	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1173	0.0746	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS255T_FIBROBLAST	1	1	0.1919	FALSE	462	80	0	856	0	FALSE	ACH-000199
HS255T_FIBROBLAST	NRIP1--AF127936.7	11	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.1173	0.0213	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS255T_FIBROBLAST	0.93	1	0.1386	FALSE	292	1546	117	613	0	FALSE	ACH-000199
HS255T_FIBROBLAST	IGFBP5--MT-ND5	9	6	IGFBP5	6713	chr2:217540083:-	MT-ND5	13684	chrM:13052:+	INCL_NON_REF_SPLICE	YES	12752	7279	0	0	0.096	0.064	IGFBP5->Oncogene{Bushman},chr2:217536828-217560248:-,insulin_like_growth_factor_binding_protein_5,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS255T_FIBROBLAST	0	0	0.16	FALSE	0	0	0	1	0	FALSE	ACH-000199
HS255T_FIBROBLAST	COL1A1--COL6A2	9	1	COL1A1	9774	chr17:48270001:-	COL6A2	29401	chr21:47537350:+	INCL_NON_REF_SPLICE	NO	8182	1072	0	0.01	0.096	0.0107	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS255T_FIBROBLAST	0	0.01	0.1067	FALSE	0	0	0	6	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-TE	3	22	MT-ND6	1096	chrM:14578:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.032	0.2345	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS255T_FIBROBLAST	0.93	1	0.2665	FALSE	499	1288	110	792	0	FALSE	ACH-000199
HS255T_FIBROBLAST	NRIP1--AF127936.7	7	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.67	1	0.0746	0.032	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS255T_FIBROBLAST	0.67	1	0.1066	FALSE	164	806	69	479	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-TE	5	10	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	5	0	0.75	1	0.0533	0.1066	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS255T_FIBROBLAST	0.75	1	0.1599	FALSE	499	1288	110	792	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MYL9--MT-CO3	7	2	MYL9	4926	chr20:35178072:+	MT-CO3	8144	chrM:9268:+	INCL_NON_REF_SPLICE	YES	988	1	0.01	0.9	0.0746	0.0213	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HS255T_FIBROBLAST	0.01	0.9	0.0959	FALSE	29	0	0	10	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND3--MT-ATP8	7	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0746	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS255T_FIBROBLAST	1	1	0.0746	FALSE	351	233	23	137	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--COL1A2	6	4	MT-ND6	1313	chrM:14361:-	COL1A2	30434	chr7:94054428:+	INCL_NON_REF_SPLICE	YES	5988	8579	0	0	0.064	0.0426	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS255T_FIBROBLAST	0	0	0.1066	FALSE	0	1	0	7	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0746	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS255T_FIBROBLAST	1	1	0.0746	FALSE	499	1288	110	792	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-TE	7	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0746	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS255T_FIBROBLAST	1	1	0.0746	FALSE	499	1288	110	792	0	FALSE	ACH-000199
HS255T_FIBROBLAST	PFKL--MT-ND4L	6	2	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	408	0	0.02	1	0.064	0.0213	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS255T_FIBROBLAST	0.02	1	0.0853	FALSE	0	0	0	33	0	FALSE	ACH-000199
HS255T_FIBROBLAST	RP11-444D3.1--SOX5	6	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.064	0.0213	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS255T_FIBROBLAST	1	1	0.0853	TRUE	274	363	69	150	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-ND5	5	4	MT-ND6	1412	chrM:14262:-	MT-ND5	6311	chrM:14122:+	INCL_NON_REF_SPLICE	YES	1234	1610	0.01	0.01	0.0533	0.0426	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS255T_FIBROBLAST	0.01	0.01	0.0959	FALSE	101	855	57	72	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-TE	3	10	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.1066	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS255T_FIBROBLAST	1	1	0.1386	FALSE	499	1288	110	792	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MYL9--MT-CO3	5	2	MYL9	4577	chr20:35177723:+	MT-CO3	8119	chrM:9243:+	INCL_NON_REF_SPLICE	YES	746	0	0.01	1	0.0533	0.0213	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HS255T_FIBROBLAST	0.01	1	0.0746	FALSE	29	0	0	10	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--COL1A2	4	5	MT-ND6	1303	chrM:14371:-	COL1A2	23058	chr7:94047052:+	INCL_NON_REF_SPLICE	YES	6396	6438	0	0	0.0426	0.0533	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS255T_FIBROBLAST	0	0	0.0959	FALSE	0	1	0	2	0	FALSE	ACH-000199
HS255T_FIBROBLAST	C15orf57--CBX3	3	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	28	12	0.28	0.48	0.032	0.0853	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS255T_FIBROBLAST	0.28	0.48	0.1173	TRUE	267	562	48	632	0	FALSE	ACH-000199
HS255T_FIBROBLAST	CTGF--TPM2	5	0	CTGF	1143	chr6:132272371:-	TPM2	8296	chr9:35689920:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS255T_FIBROBLAST	1	1	0.0533	TRUE	0	0	0	2	0	TRUE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS255T_FIBROBLAST	1	1	0.0533	FALSE	499	1288	110	792	0	FALSE	ACH-000199
HS255T_FIBROBLAST	IGFBP5--MT-ND5	3	5	IGFBP5	6732	chr2:217540064:-	MT-ND5	13703	chrM:13071:+	INCL_NON_REF_SPLICE	YES	11969	7251	0	0	0.032	0.0533	IGFBP5->Oncogene{Bushman},chr2:217536828-217560248:-,insulin_like_growth_factor_binding_protein_5,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS255T_FIBROBLAST	0	0	0.0853	FALSE	0	0	0	1	0	FALSE	ACH-000199
HS255T_FIBROBLAST	RP11-334E6.12--MT2A	4	1	RP11-334E6.12	2039	chr11:119289699:+	MT2A	5557	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	359	4	0.01	0.56	0.0426	0.0107	RP11-334E6.12->chr11:119288661-119289824:+,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS255T_FIBROBLAST	0.01	0.56	0.0533	FALSE	0	0	0	7	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--COL1A2	3	4	MT-ND6	1320	chrM:14354:-	COL1A2	29696	chr7:94053690:+	INCL_NON_REF_SPLICE	NO	5493	8230	0	0	0.032	0.0426	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS255T_FIBROBLAST	0	0	0.0746	FALSE	0	1	0	7	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-TE	4	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS255T_FIBROBLAST	1	1	0.0426	FALSE	499	1288	110	792	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MYL9--MT-CO3	3	3	MYL9	4951	chr20:35178097:+	MT-CO3	8138	chrM:9262:+	INCL_NON_REF_SPLICE	NO	607	1	0.01	0.86	0.032	0.032	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HS255T_FIBROBLAST	0.01	0.86	0.064	FALSE	29	0	0	10	0	FALSE	ACH-000199
HS255T_FIBROBLAST	VIM--TPM2	3	3	VIM	2653	chr10:17271910:+	TPM2	13337	chr9:35689885:-	INCL_NON_REF_SPLICE	NO	5948	51	0	0.11	0.032	0.032	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS255T_FIBROBLAST	0	0.11	0.064	FALSE	0	0	0	8	0	FALSE	ACH-000199
HS255T_FIBROBLAST	COL8A1--CMSS1	3	1	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	218	7	0.02	0.36	0.032	0.0107	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HS255T_FIBROBLAST	0.02	0.36	0.0427	FALSE	76	19	3	26	0	FALSE	ACH-000199
HS255T_FIBROBLAST	LINC00578--RP11-91K9.1	2	5	LINC00578	4542	chr3:177347343:+	RP11-91K9.1	12415	chr3:177613401:+	ONLY_REF_SPLICE	YES	46	0	0.13	1	0.0213	0.0533	NEIGHBORS[64560],LINC00578->chr3:177159709-177470093:+,long_intergenic_non-protein_coding_RNA_578,RP11-91K9.1->chr3:177534653-177617012:+	HS255T_FIBROBLAST	0.13	1	0.0746	FALSE	8	15	2	1	0	FALSE	ACH-000199
HS255T_FIBROBLAST	RP11-155G15.2--RP11-1E3.1	3	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0.0107	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HS255T_FIBROBLAST	1	1	0.0427	FALSE	46	201	11	112	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS255T_FIBROBLAST	1	1	0.032	FALSE	499	1288	110	792	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MYH9--MT-ND5	3	0	MYH9	17703	chr22:36708158:-	MT-ND5	45321	chrM:13064:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS255T_FIBROBLAST	1	1	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000199
HS255T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0213	0.0426	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS255T_FIBROBLAST	0.86	1	0.0639	FALSE	515	4851	409	746	0	FALSE	ACH-000199
HS255T_FIBROBLAST	VIM--TPM2	3	0	VIM	2115	chr10:17271372:+	TPM2	13298	chr9:35689924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS255T_FIBROBLAST	1	1	0.032	TRUE	0	0	0	8	0	TRUE	ACH-000199
HS255T_FIBROBLAST	CTD-2337A12.1--CAST	2	3	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	48	1	0.09	0.0213	0.032	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS255T_FIBROBLAST	0.09	1	0.0533	TRUE	347	1186	183	220	0	FALSE	ACH-000199
HS255T_FIBROBLAST	RP11-680G10.1--GSE1	2	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	38	1	0.12	0.0213	0.032	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS255T_FIBROBLAST	0.12	1	0.0533	TRUE	64	13	3	59	0	FALSE	ACH-000199
HS255T_FIBROBLAST	CHRM2--PTN	2	1	CHRM2	1750	chr7:136554165:+	PTN	17315	chr7:136939721:-	ONLY_REF_SPLICE	YES	597	884	0.01	0	0.0213	0.0107	CHRM2->cholinergic_receptor_muscarinic_2,chr7:136553416-136705002:+,PTN->Oncogene{Bushman},chr7:136912088-137028611:-,pleiotrophin	HS255T_FIBROBLAST	0	0.01	0.032	FALSE	0	1	0	1	0	FALSE	ACH-000199
HS255T_FIBROBLAST	FN1--DCN	2	1	FN1	31353	chr2:216249583:-	DCN	66336	chr12:91558494:-	ONLY_REF_SPLICE	YES	5636	9303	0	0	0.0213	0.0107	GTEx&tcga_normals:1/3694=0.03%,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,DCN->chr12:91539025-91576900:-,decorin	HS255T_FIBROBLAST	0	0	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000199
HS255T_FIBROBLAST	THBS1--PDE5A	2	1	THBS1	9229	chr15:39881555:+	PDE5A	51601	chr4:120419893:-	ONLY_REF_SPLICE	YES	5029	541	0	0.01	0.0213	0.0107	THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,PDE5A->chr4:120415550-120550146:-,phosphodiesterase_5A	HS255T_FIBROBLAST	0	0.01	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000199
HS255T_FIBROBLAST	COL1A1--COL6A2	2	0	COL1A1	9420	chr17:48270355:-	COL6A2	34461	chr21:47542410:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS255T_FIBROBLAST	1	1	0.0213	TRUE	0	0	0	2	0	TRUE	ACH-000199
HS255T_FIBROBLAST	CPQ--SDC2	2	0	CPQ	1176	chr8:97657630:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	HS255T_FIBROBLAST	1	1	0.0213	TRUE	1	37	5	9	9	TRUE	ACH-000199
HS255T_FIBROBLAST	KIAA1199--TPM1	2	0	KIAA1199	14615	chr15:81201647:+	TPM1	42804	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	KIAA1199->chr15:81071684-81244117:+,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	HS255T_FIBROBLAST	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000199
HS255T_FIBROBLAST	MANBA--UBE2D3	2	0	MANBA	1277	chr4:103681875:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	HS255T_FIBROBLAST	1	1	0.0213	TRUE	12	9	1	12	0	FALSE	ACH-000199
HS255T_FIBROBLAST	MINOS1--CAPZB	2	0	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	HS255T_FIBROBLAST	1	1	0.0213	TRUE	2	7	0	21	0	FALSE	ACH-000199
HS255T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0107	0.0426	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS255T_FIBROBLAST	1	1	0.0533	FALSE	467	2173	244	435	0	FALSE	ACH-000199
HS255T_FIBROBLAST	TPM2--THBS2	2	0	TPM2	4592	chr9:35685061:-	THBS2	25251	chr6:169629774:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Artery_-_Coronary=1},TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),THBS2->Oncogene{Bushman},chr6:169615875-169654139:-,thrombospondin_2	HS255T_FIBROBLAST	1	1	0.0213	TRUE	1	0	0	1	0	TRUE	ACH-000199
HS255T_FIBROBLAST	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HS255T_FIBROBLAST	1	1	0.0213	FALSE	272	151	14	158	0	FALSE	ACH-000199
HS255T_FIBROBLAST	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0107	0.032	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS255T_FIBROBLAST	1	1	0.0427	TRUE	160	277	29	98	0	FALSE	ACH-000199
HS255T_FIBROBLAST	CALD1--BPGM	1	1	CALD1	9086	chr7:134552555:+	BPGM	41513	chr7:134363605:+	ONLY_REF_SPLICE	NO	4035	157	0	0.01	0.0107	0.0107	LOCAL_REARRANGEMENT:+:[64438],CALD1->caldesmon_1,chr7:134429003-134655479:+,BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+	HS255T_FIBROBLAST	0	0.01	0.0214	FALSE	0	1	0	2	0	FALSE	ACH-000199
HS255T_FIBROBLAST	CD44--PDHX	1	1	CD44	6409	chr11:35211519:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	1432	60	0	0.03	0.0107	0.0107	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HS255T_FIBROBLAST	0	0.03	0.0214	FALSE	0	20	0	35	2	FALSE	ACH-000199
HS255T_FIBROBLAST	LINC00578--RP11-91K9.1	1	1	LINC00578	2289	chr3:177257281:+	RP11-91K9.1	12415	chr3:177613401:+	ONLY_REF_SPLICE	YES	62	0	0.03	1	0.0107	0.0107	NEIGHBORS[64560],LINC00578->chr3:177159709-177470093:+,long_intergenic_non-protein_coding_RNA_578,RP11-91K9.1->chr3:177534653-177617012:+	HS255T_FIBROBLAST	0.03	1	0.0214	FALSE	2	2	0	1	0	FALSE	ACH-000199
UACC893_BREAST	HUWE1--XAGE1A	2828	1258	HUWE1	7413	chrX:53674311:-	XAGE1A	81364	chrX:52258715:-	ONLY_REF_SPLICE	YES	43	7	0.99	1	29.7695	13.2426	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,XAGE1A->X_antigen_family_member_1A,chrX:52255219-52260363:-	UACC893_BREAST	0.99	1	43.0121	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	RARA--KIAA0195	977	546	RARA	6149	chr17:38487648:+	KIAA0195	27464	chr17:73481509:+	ONLY_REF_SPLICE	YES	16	36	0.99	0.98	10.2846	5.7476	{Klijn_CCL:Breast=1},RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,KIAA0195->chr17:73437240-73496171:+	UACC893_BREAST	0.98	0.99	16.0322	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	EZR--RSPH3	547	220	EZR	2248	chr6:159239114:-	RSPH3	25887	chr6:159399378:-	ONLY_REF_SPLICE	YES	722	13	0.52	0.98	5.7581	2.3159	EZR->chr6:159186773-159240444:-,ezrin,RSPH3->chr6:159393903-159421219:-,radial_spoke_3_homolog	UACC893_BREAST	0.52	0.98	8.074	TRUE	0	0	0	3	0	TRUE	ACH-000554
UACC893_BREAST	HUWE1--XAGE1A	4	1261	HUWE1	7413	chrX:53674311:-	XAGE1A	79962	chrX:52260203:-	INCL_NON_REF_SPLICE	YES	43	8	0.97	0.99	0.0421	13.2742	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,XAGE1A->X_antigen_family_member_1A,chrX:52255219-52260363:-	UACC893_BREAST	0.97	0.99	13.3163	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	CCDC6--ANK3	248	101	CCDC6	1535	chr10:61665880:-	ANK3	85094	chr10:61802517:-	ONLY_REF_SPLICE	YES	65	38	0.84	0.9	2.6106	1.0632	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	UACC893_BREAST	0.84	0.9	3.6738	TRUE	0	3	0	2	3	TRUE	ACH-000554
UACC893_BREAST	FBXL20--CDK12	237	77	FBXL20	3225	chr17:37499433:-	CDK12	31941	chr17:37665958:+	ONLY_REF_SPLICE	YES	5	828	0.98	0.27	2.4948	0.8106	{Klijn_CCL:Breast=1},LOCAL_INVERSION:-:+:[58988],FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	UACC893_BREAST	0.27	0.98	3.3054	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	DOCK5--CDCA2	173	53	DOCK5	1229	chr8:25042466:+	CDCA2	83724	chr8:25360889:+	ONLY_REF_SPLICE	YES	0	1	1	1	1.8211	0.5579	NEIGHBORS[40915],DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5,CDCA2->cell_division_cycle_associated_2,chr8:25316513-25365436:+	UACC893_BREAST	1	1	2.379	FALSE	0	0	0	2	0	FALSE	ACH-000554
UACC893_BREAST	GRB7--PPP1R1B	134	44	GRB7	8206	chr17:37902455:+	PPP1R1B	20143	chr17:37792069:+	ONLY_REF_SPLICE	YES	1378	321	0.11	0.36	1.4106	0.4632	GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7,PPP1R1B->Oncogene{Bushman},chr17:37782993-37792879:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1B	UACC893_BREAST	0.11	0.36	1.8738	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MED1--IKZF3	132	43	MED1	6915	chr17:37595418:-	IKZF3	29533	chr17:37949186:-	ONLY_REF_SPLICE	YES	284	0	0.38	1	1.3895	0.4526	MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	UACC893_BREAST	0.38	1	1.8421	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	SIAH1--ABCC11	100	57	SIAH1	9331	chr16:48419115:-	ABCC11	52105	chr16:48204878:-	ONLY_REF_SPLICE	YES	16	26	0.91	0.86	1.0527	0.6	SIAH1->chr16:48390275-48482313:-,siah_E3_ubiquitin_protein_ligase_1,ABCC11->ATP_binding_cassette_subfamily_C_member_11,chr16:48200821-48281479:-	UACC893_BREAST	0.86	0.91	1.6527	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MT-TA--MT-TC	110	14	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1579	0.1474	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UACC893_BREAST	1	1	1.3053	FALSE	462	80	0	856	0	FALSE	ACH-000554
UACC893_BREAST	PDE7A--ARMC1	107	23	PDE7A	1952	chr8:66753606:-	ARMC1	31307	chr8:66525668:-	ONLY_REF_SPLICE	YES	3	72	0.98	0.64	1.1264	0.2421	NEIGHBORS[83303],PDE7A->chr8:66629745-66754557:-,phosphodiesterase_7A,ARMC1->armadillo_repeat_containing_1,chr8:66514694-66546442:-	UACC893_BREAST	0.64	0.98	1.3685	FALSE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	CCDC6--ANK3	82	101	CCDC6	1535	chr10:61665880:-	ANK3	85097	chr10:61802514:-	INCL_NON_REF_SPLICE	YES	65	34	0.74	0.84	0.8632	1.0632	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	UACC893_BREAST	0.74	0.84	1.9264	TRUE	0	3	0	2	3	TRUE	ACH-000554
UACC893_BREAST	BAIAP2--PSMD12	91	42	BAIAP2	1161	chr17:79009108:+	PSMD12	44021	chr17:65338379:-	ONLY_REF_SPLICE	YES	71	166	0.65	0.44	0.9579	0.4421	{Klijn_CCL:Breast=1},BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+,PSMD12->chr17:65334032-65362743:-,proteasome_26S_subunit,_non-ATPase_12	UACC893_BREAST	0.44	0.65	1.4	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	LLGL2--RECQL5	98	6	LLGL2	1746	chr17:73521906:+	RECQL5	28233	chr17:73661252:-	ONLY_REF_SPLICE	YES	37	1348	0.74	0.07	1.0316	0.0632	LOCAL_INVERSION:+:-:[51636],LLGL2->LLGL2,_scribble_cell_polarity_complex_component,chr17:73521161-73571289:+,RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-	UACC893_BREAST	0.07	0.74	1.0948	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	TIMM23B--LINC00843	89	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.9369	0.3474	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	UACC893_BREAST	0.98	1	1.2843	TRUE	508	994	45	981	0	FALSE	ACH-000554
UACC893_BREAST	HUWE1--XAGE1A	4	340	HUWE1	7299	chrX:53674425:-	XAGE1A	81364	chrX:52258715:-	INCL_NON_REF_SPLICE	YES	176	7	0.66	0.98	0.0421	3.5791	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,XAGE1A->X_antigen_family_member_1A,chrX:52255219-52260363:-	UACC893_BREAST	0.66	0.98	3.6212	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	OR51S1--TP53I11	87	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9158	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	UACC893_BREAST	1	1	0.9158	TRUE	402	216	10	229	0	FALSE	ACH-000554
UACC893_BREAST	HUWE1--XAGE1A	4	239	HUWE1	7413	chrX:53674311:-	XAGE1A	82033	chrX:52258046:-	ONLY_REF_SPLICE	YES	43	250	0.85	0.49	0.0421	2.5159	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,XAGE1A->X_antigen_family_member_1A,chrX:52255219-52260363:-	UACC893_BREAST	0.49	0.85	2.558	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	CCSER1--HERC6	59	15	CCSER1	1297	chr4:91048982:+	HERC6	56219	chr4:89345012:+	ONLY_REF_SPLICE	YES	6	4	0.93	0.95	0.6211	0.1579	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,HERC6->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_6,chr4:89299891-89364263:+	UACC893_BREAST	0.93	0.95	0.779	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	UBE2K--UGDH-AS1	61	6	UBE2K	1347	chr4:39700010:+	UGDH-AS1	17277	chr4:39589543:+	ONLY_REF_SPLICE	YES	26	0	0.72	1	0.6421	0.0632	UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,UGDH-AS1->UGDH_antisense_RNA_1,chr4:39529639-39596327:+	UACC893_BREAST	0.72	1	0.7053	TRUE	0	1	0	1	1	TRUE	ACH-000554
UACC893_BREAST	LLGL2--RECQL5	56	11	LLGL2	1746	chr17:73521906:+	RECQL5	27040	chr17:73662700:-	ONLY_REF_SPLICE	YES	37	1177	0.64	0.05	0.5895	0.1158	LOCAL_INVERSION:+:-:[51636],LLGL2->LLGL2,_scribble_cell_polarity_complex_component,chr17:73521161-73571289:+,RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-	UACC893_BREAST	0.05	0.64	0.7053	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	TIMM23--RP11-464F9.1	54	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	250	4	0.18	0.93	0.5684	0.0211	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	UACC893_BREAST	0.18	0.93	0.5895	TRUE	519	3926	326	965	0	FALSE	ACH-000554
UACC893_BREAST	ITGB6--RBMS1	47	25	ITGB6	21507	chr2:160968591:-	RBMS1	42878	chr2:161143595:-	ONLY_REF_SPLICE	YES	92	74	0.44	0.49	0.4948	0.2632	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[263],ITGB6->chr2:160956177-161128399:-,integrin_subunit_beta_6,RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-	UACC893_BREAST	0.44	0.49	0.758	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	GSK3B--GPR156	46	20	GSK3B	2071	chr3:119812194:-	GPR156	26692	chr3:119912271:-	ONLY_REF_SPLICE	YES	93	0	0.42	1	0.4842	0.2105	LOCAL_REARRANGEMENT:-:[70228],GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,GPR156->G_protein-coupled_receptor_156,chr3:119883492-120003941:-	UACC893_BREAST	0.42	1	0.6947	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	HUWE1--XAGE1A	3	181	HUWE1	6569	chrX:53675155:-	XAGE1A	81364	chrX:52258715:-	ONLY_REF_SPLICE	YES	593	7	0.24	0.96	0.0316	1.9053	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,XAGE1A->X_antigen_family_member_1A,chrX:52255219-52260363:-	UACC893_BREAST	0.24	0.96	1.9369	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	HUWE1--XAGE1A	23	65	HUWE1	5470	chrX:53681007:-	XAGE1A	81364	chrX:52258715:-	ONLY_REF_SPLICE	YES	782	7	0.1	0.93	0.2421	0.6842	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,XAGE1A->X_antigen_family_member_1A,chrX:52255219-52260363:-	UACC893_BREAST	0.1	0.93	0.9263	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	LLGL2--RECQL5	36	7	LLGL2	1746	chr17:73521906:+	RECQL5	27103	chr17:73662637:-	INCL_NON_REF_SPLICE	YES	37	928	0.54	0.04	0.379	0.0737	LOCAL_INVERSION:+:-:[51636],LLGL2->LLGL2,_scribble_cell_polarity_complex_component,chr17:73521161-73571289:+,RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-	UACC893_BREAST	0.04	0.54	0.4527	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	EIF2AK3--PRKD3	32	6	EIF2AK3	3924	chr2:88913242:-	PRKD3	30146	chr2:37520414:-	ONLY_REF_SPLICE	YES	19	5	0.67	0.88	0.3369	0.0632	PROTCLUST,{Klijn_CCL:Breast=1},EIF2AK3->chr2:88856259-88927094:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_3,PRKD3->chr2:37477645-37551951:-,protein_kinase_D3	UACC893_BREAST	0.67	0.88	0.4001	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	FEM1B--KCNG3	30	12	FEM1B	1863	chr15:68571003:+	KCNG3	16076	chr2:42671719:-	ONLY_REF_SPLICE	YES	21	2	0.67	0.95	0.3158	0.1263	{Klijn_CCL:Breast=1},FEM1B->chr15:68570141-68588203:+,fem-1_homolog_B,KCNG3->chr2:42669157-42721237:-,potassium_voltage-gated_channel_modifier_subfamily_G_member_3	UACC893_BREAST	0.67	0.95	0.4421	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	CCDC6--ANK3	4	102	CCDC6	1535	chr10:61665880:-	ANK3	83505	chr10:61804106:-	ONLY_REF_SPLICE	YES	65	37	0.62	0.74	0.0421	1.0737	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	UACC893_BREAST	0.62	0.74	1.1158	TRUE	0	1	0	1	1	TRUE	ACH-000554
UACC893_BREAST	SNHG3--EYA3	24	15	SNHG3	5125	chr1:28836616:+	EYA3	16654	chr1:28343750:-	INCL_NON_REF_SPLICE	YES	7	5	0.85	0.89	0.2526	0.1579	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-	UACC893_BREAST	0.85	0.89	0.4105	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	RARA--KIAA0195	20	27	RARA	2263	chr17:38474700:+	KIAA0195	28326	chr17:73482371:+	ONLY_REF_SPLICE	YES	933	317	0.05	0.13	0.2105	0.2842	{Klijn_CCL:Breast=1},RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,KIAA0195->chr17:73437240-73496171:+	UACC893_BREAST	0.05	0.13	0.4947	TRUE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	ZNF710--WDR93	24	11	ZNF710	6867	chr15:90617522:+	WDR93	25845	chr15:90270388:+	ONLY_REF_SPLICE	YES	101	1	0.26	0.97	0.2526	0.1158	ZNF710->chr15:90544624-90625438:+,zinc_finger_protein_710,WDR93->WD_repeat_domain_93,chr15:90234028-90286869:+	UACC893_BREAST	0.26	0.97	0.3684	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	GAREM--RP11-405F3.4	25	6	GAREM	4540	chr18:29890156:-	RP11-405F3.4	22154	chr16:57720732:-	ONLY_REF_SPLICE	YES	21	0	0.6	1	0.2632	0.0632	GAREM->chr18:29704840-30050447:-,RP11-405F3.4->chr16:57715036-57735642:-	UACC893_BREAST	0.6	1	0.3264	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	RARA--KIAA0195	1	96	RARA	6149	chr17:38487648:+	KIAA0195	28326	chr17:73482371:+	ONLY_REF_SPLICE	NO	16	317	0.86	0.23	0.0105	1.0106	{Klijn_CCL:Breast=1},RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,KIAA0195->chr17:73437240-73496171:+	UACC893_BREAST	0.23	0.86	1.0211	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MT-ND6--MT-TE	23	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2421	0.0316	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UACC893_BREAST	1	1	0.2737	FALSE	499	1288	110	792	0	FALSE	ACH-000554
UACC893_BREAST	SIAH1--ABCC11	18	17	SIAH1	9331	chr16:48419115:-	ABCC11	53968	chr16:48201571:-	ONLY_REF_SPLICE	YES	16	94	0.69	0.27	0.1895	0.179	SIAH1->chr16:48390275-48482313:-,siah_E3_ubiquitin_protein_ligase_1,ABCC11->ATP_binding_cassette_subfamily_C_member_11,chr16:48200821-48281479:-	UACC893_BREAST	0.27	0.69	0.3685	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MTATP6P1--MTND2P28	22	0	MTATP6P1	1098	chr1:569173:+	MTND2P28	5521	chr1:565859:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2316	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	UACC893_BREAST	1	1	0.2316	TRUE	20	3	0	12	0	FALSE	ACH-000554
UACC893_BREAST	CHKA--CASC3	20	7	CHKA	2767	chr11:67864486:-	CASC3	21646	chr17:38318006:+	ONLY_REF_SPLICE	YES	57	1162	0.32	0.02	0.2105	0.0737	{Klijn_CCL:Breast=1},CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	UACC893_BREAST	0.02	0.32	0.2842	TRUE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	GSK3B--GPR156	19	8	GSK3B	2071	chr3:119812194:-	GPR156	28178	chr3:119905630:-	ONLY_REF_SPLICE	YES	93	15	0.23	0.64	0.2	0.0842	LOCAL_REARRANGEMENT:-:[70228],GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,GPR156->G_protein-coupled_receptor_156,chr3:119883492-120003941:-	UACC893_BREAST	0.23	0.64	0.2842	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MT-TA--MT-TC	19	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UACC893_BREAST	1	1	0.2	FALSE	462	80	0	856	0	FALSE	ACH-000554
UACC893_BREAST	C15orf57--CBX3	16	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	42	37	0.39	0.42	0.1684	0.1158	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	UACC893_BREAST	0.39	0.42	0.2842	TRUE	267	562	48	632	0	FALSE	ACH-000554
UACC893_BREAST	DHX30--SMARCC1	17	4	DHX30	16063	chr3:47882668:+	SMARCC1	47917	chr3:47712207:-	ONLY_REF_SPLICE	YES	13	0	0.62	1	0.179	0.0421	LOCAL_INVERSION:+:-:[20803],DHX30->DEAH-box_helicase_30,chr3:47844399-47891685:+,SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-	UACC893_BREAST	0.62	1	0.2211	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	SEC63--REV3L	16	8	SEC63	16521	chr6:108222574:-	REV3L	75553	chr6:111628773:-	ONLY_REF_SPLICE	YES	205	21	0.1	0.53	0.1684	0.0842	SEC63->SEC63_homolog,_protein_translocation_regulator,chr6:108188960-108279393:-,REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-	UACC893_BREAST	0.1	0.53	0.2526	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MT-ND6--MT-TE	14	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.1474	0.1579	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UACC893_BREAST	0.91	1	0.3053	FALSE	499	1288	110	792	0	FALSE	ACH-000554
UACC893_BREAST	C15orf57--CBX3	13	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	39	37	0.35	0.36	0.1368	0.0842	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	UACC893_BREAST	0.35	0.36	0.221	TRUE	267	562	48	632	0	FALSE	ACH-000554
UACC893_BREAST	NIPA2--POLA1	15	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1579	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	UACC893_BREAST	1	1	0.1579	TRUE	46	1352	75	139	0	FALSE	ACH-000554
UACC893_BREAST	MT-TA--MT-TC	12	9	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1263	0.0947	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UACC893_BREAST	1	1	0.221	FALSE	462	80	0	856	0	FALSE	ACH-000554
UACC893_BREAST	LLGL2--RECQL5	13	3	LLGL2	1746	chr17:73521906:+	RECQL5	29355	chr17:73659077:-	ONLY_REF_SPLICE	YES	37	1678	0.3	0.01	0.1368	0.0316	LOCAL_INVERSION:+:-:[51636],LLGL2->LLGL2,_scribble_cell_polarity_complex_component,chr17:73521161-73571289:+,RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-	UACC893_BREAST	0.01	0.3	0.1684	TRUE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	PLA2G6--EIF4ENIF1	12	6	PLA2G6	24159	chr22:38519102:-	EIF4ENIF1	46125	chr22:31846346:-	ONLY_REF_SPLICE	YES	30	13	0.38	0.58	0.1263	0.0632	PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI,EIF4ENIF1->chr22:31832963-31892094:-,eukaryotic_translation_initiation_factor_4E_nuclear_import_factor_1	UACC893_BREAST	0.38	0.58	0.1895	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	GRB7--PPP1R1B	9	17	GRB7	8206	chr17:37902455:+	PPP1R1B	20297	chr17:37792223:+	INCL_NON_REF_SPLICE	YES	1378	328	0.02	0.07	0.0947	0.179	GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7,PPP1R1B->Oncogene{Bushman},chr17:37782993-37792879:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1B	UACC893_BREAST	0.02	0.07	0.2737	TRUE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	MT-ND6--MT-TE	10	11	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1053	0.1158	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UACC893_BREAST	1	1	0.2211	FALSE	499	1288	110	792	0	FALSE	ACH-000554
UACC893_BREAST	RARA--KIAA0195	4	32	RARA	2263	chr17:38474700:+	KIAA0195	27907	chr17:73481952:+	ONLY_REF_SPLICE	YES	933	124	0.04	0.23	0.0421	0.3369	{Klijn_CCL:Breast=1},RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,KIAA0195->chr17:73437240-73496171:+	UACC893_BREAST	0.04	0.23	0.379	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	ACTN4--CDH13	9	10	ACTN4	1259	chr19:39138547:+	CDH13	39647	chr16:83065615:+	ONLY_REF_SPLICE	YES	370	0	0.05	1	0.0947	0.1053	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+	UACC893_BREAST	0.05	1	0.2	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	FBXL20--CDK12	1	42	FBXL20	2163	chr17:37557614:-	CDK12	31941	chr17:37665958:+	ONLY_REF_SPLICE	NO	5	828	0.9	0.05	0.0105	0.4421	{Klijn_CCL:Breast=1},LOCAL_INVERSION:-:+:[58988],FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	UACC893_BREAST	0.05	0.9	0.4526	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	NRIP1--AF127936.7	11	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1158	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	UACC893_BREAST	1	1	0.1158	FALSE	292	1546	117	613	0	FALSE	ACH-000554
UACC893_BREAST	EYA3--RCC1	8	8	EYA3	6602	chr1:28362055:-	RCC1	33321	chr1:28843237:+	ONLY_REF_SPLICE	YES	5	0	0.76	1	0.0842	0.0842	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1	UACC893_BREAST	0.76	1	0.1684	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	RARA--KIAA0195	2	32	RARA	4609	chr17:38482803:+	KIAA0195	27907	chr17:73481952:+	ONLY_REF_SPLICE	YES	1049	124	0.03	0.22	0.0211	0.3369	{Klijn_CCL:Breast=1},RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,KIAA0195->chr17:73437240-73496171:+	UACC893_BREAST	0.03	0.22	0.358	TRUE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	MT-ND6--MT-TE	4	22	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0421	0.2316	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UACC893_BREAST	0.9	1	0.2737	FALSE	499	1288	110	792	0	FALSE	ACH-000554
UACC893_BREAST	EIF2AK3--PRKD3	7	9	EIF2AK3	3924	chr2:88913242:-	PRKD3	28203	chr2:37544322:-	ONLY_REF_SPLICE	YES	19	2	0.46	0.89	0.0737	0.0947	PROTCLUST,{Klijn_CCL:Breast=1},EIF2AK3->chr2:88856259-88927094:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_3,PRKD3->chr2:37477645-37551951:-,protein_kinase_D3	UACC893_BREAST	0.46	0.89	0.1684	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MT-ND6--MT-TE	4	21	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.0421	0.2211	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UACC893_BREAST	0.86	1	0.2632	FALSE	499	1288	110	792	0	FALSE	ACH-000554
UACC893_BREAST	SNHG3--EYA3	7	9	SNHG3	3926	chr1:28835417:+	EYA3	16654	chr1:28343750:-	INCL_NON_REF_SPLICE	YES	83	5	0.16	0.76	0.0737	0.0947	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-	UACC893_BREAST	0.16	0.76	0.1684	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MT-TA--MT-TC	5	16	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0.1684	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UACC893_BREAST	1	1	0.221	FALSE	462	80	0	856	0	FALSE	ACH-000554
UACC893_BREAST	EYA3--RCC1	7	7	EYA3	6602	chr1:28362055:-	RCC1	36286	chr1:28856370:+	ONLY_REF_SPLICE	YES	5	2	0.74	0.88	0.0737	0.0737	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1	UACC893_BREAST	0.74	0.88	0.1474	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MT-ND6--MT-TE	6	10	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0.1053	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UACC893_BREAST	1	1	0.1685	FALSE	499	1288	110	792	0	FALSE	ACH-000554
UACC893_BREAST	MAP4--DHX30	7	4	MAP4	16041	chr3:47956307:-	DHX30	54537	chr3:47882367:+	ONLY_REF_SPLICE	YES	33	29	0.25	0.28	0.0737	0.0421	LOCAL_INVERSION:-:+:[497],MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,DHX30->DEAH-box_helicase_30,chr3:47844399-47891685:+	UACC893_BREAST	0.25	0.28	0.1158	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MTATP6P1--MTND2P28	7	4	MTATP6P1	1140	chr1:569215:+	MTND2P28	5395	chr1:565733:+	INCL_NON_REF_SPLICE	YES	1973	387	0.01	0.03	0.0737	0.0421	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	UACC893_BREAST	0.01	0.03	0.1158	TRUE	20	3	0	12	0	FALSE	ACH-000554
UACC893_BREAST	GRB7--PPP1R1B	4	15	GRB7	8206	chr17:37902455:+	PPP1R1B	20319	chr17:37792245:+	INCL_NON_REF_SPLICE	YES	1378	309	0.01	0.06	0.0421	0.1579	GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7,PPP1R1B->Oncogene{Bushman},chr17:37782993-37792879:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1B	UACC893_BREAST	0.01	0.06	0.2	TRUE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	PDE7A--ARMC1	2	23	PDE7A	3227	chr8:66750709:-	ARMC1	31307	chr8:66525668:-	ONLY_REF_SPLICE	YES	5	72	0.83	0.26	0.0211	0.2421	NEIGHBORS[83303],PDE7A->chr8:66629745-66754557:-,phosphodiesterase_7A,ARMC1->armadillo_repeat_containing_1,chr8:66514694-66546442:-	UACC893_BREAST	0.26	0.83	0.2632	FALSE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	RARA--KIAA0195	1	27	RARA	4609	chr17:38482803:+	KIAA0195	28326	chr17:73482371:+	ONLY_REF_SPLICE	NO	1049	317	0.03	0.08	0.0105	0.2842	{Klijn_CCL:Breast=1},RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,KIAA0195->chr17:73437240-73496171:+	UACC893_BREAST	0.03	0.08	0.2947	TRUE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	SLC1A5--MT-ND4L	7	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	524	0	0.02	1	0.0737	0.0211	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UACC893_BREAST	0.02	1	0.0948	FALSE	0	0	0	189	0	FALSE	ACH-000554
UACC893_BREAST	SIAH1--ABCC11	1	25	SIAH1	9331	chr16:48419115:-	ABCC11	52854	chr16:48204129:-	ONLY_REF_SPLICE	YES	16	23	0.62	0.53	0.0105	0.2632	SIAH1->chr16:48390275-48482313:-,siah_E3_ubiquitin_protein_ligase_1,ABCC11->ATP_binding_cassette_subfamily_C_member_11,chr16:48200821-48281479:-	UACC893_BREAST	0.53	0.62	0.2737	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MT-ND6--MT-TE	3	16	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.1684	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UACC893_BREAST	1	1	0.2	FALSE	499	1288	110	792	0	FALSE	ACH-000554
UACC893_BREAST	SLC7A5--MT-ND4L	7	0	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0737	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UACC893_BREAST	1	1	0.0737	FALSE	0	0	0	23	0	FALSE	ACH-000554
UACC893_BREAST	MT-ND6--MT-TE	6	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0.0316	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UACC893_BREAST	1	1	0.0948	FALSE	499	1288	110	792	0	FALSE	ACH-000554
UACC893_BREAST	MTATP6P1--MTND2P28	6	3	MTATP6P1	1158	chr1:569233:+	MTND2P28	5581	chr1:565919:+	INCL_NON_REF_SPLICE	YES	2373	4	0	0.69	0.0632	0.0316	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	UACC893_BREAST	0	0.69	0.0948	FALSE	20	3	0	12	0	FALSE	ACH-000554
UACC893_BREAST	GSK3B--GPR156	6	2	GSK3B	2071	chr3:119812194:-	GPR156	29304	chr3:119904241:-	ONLY_REF_SPLICE	YES	93	14	0.08	0.36	0.0632	0.0211	LOCAL_REARRANGEMENT:-:[70228],GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,GPR156->G_protein-coupled_receptor_156,chr3:119883492-120003941:-	UACC893_BREAST	0.08	0.36	0.0843	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MTATP6P1--MTND2P28	4	8	MTATP6P1	1171	chr1:569246:+	MTND2P28	5279	chr1:565617:+	INCL_NON_REF_SPLICE	YES	2424	481	0	0.02	0.0421	0.0842	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	UACC893_BREAST	0	0.02	0.1263	TRUE	20	3	0	12	0	FALSE	ACH-000554
UACC893_BREAST	MT-ND6--MT-TE	3	10	MT-ND6	1036	chrM:14638:-	MT-TE	4503	chrM:14765:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.1053	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UACC893_BREAST	1	1	0.1369	FALSE	499	1288	110	792	0	FALSE	ACH-000554
UACC893_BREAST	MT-TA--MT-TC	4	6	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0.0632	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UACC893_BREAST	1	1	0.1053	FALSE	462	80	0	856	0	FALSE	ACH-000554
UACC893_BREAST	PLA2G6--EIF4ENIF1	5	2	PLA2G6	22263	chr22:38522378:-	EIF4ENIF1	46125	chr22:31846346:-	ONLY_REF_SPLICE	YES	28	13	0.2	0.35	0.0526	0.0211	PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI,EIF4ENIF1->chr22:31832963-31892094:-,eukaryotic_translation_initiation_factor_4E_nuclear_import_factor_1	UACC893_BREAST	0.2	0.35	0.0737	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	PLA2G6--EIF4ENIF1	5	2	PLA2G6	22995	chr22:38521646:-	EIF4ENIF1	46125	chr22:31846346:-	ONLY_REF_SPLICE	YES	29	13	0.19	0.35	0.0526	0.0211	PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI,EIF4ENIF1->chr22:31832963-31892094:-,eukaryotic_translation_initiation_factor_4E_nuclear_import_factor_1	UACC893_BREAST	0.19	0.35	0.0737	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	UBE2K--UGDH-AS1	5	2	UBE2K	1347	chr4:39700010:+	UGDH-AS1	18414	chr4:39591207:+	ONLY_REF_SPLICE	YES	26	19	0.21	0.27	0.0526	0.0211	UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,UGDH-AS1->UGDH_antisense_RNA_1,chr4:39529639-39596327:+	UACC893_BREAST	0.21	0.27	0.0737	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	FBXL20--CDK12	1	17	FBXL20	2163	chr17:37557614:-	CDK12	32998	chr17:37667782:+	ONLY_REF_SPLICE	YES	5	758	0.78	0.02	0.0105	0.179	{Klijn_CCL:Breast=1},LOCAL_INVERSION:-:+:[58988],FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	UACC893_BREAST	0.02	0.78	0.1895	TRUE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	MT-ND3--MT-CO3	3	8	MT-ND3	1069	chrM:10127:+	MT-CO3	4352	chrM:9212:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.0842	LOCAL_REARRANGEMENT:+:[69],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	UACC893_BREAST	1	1	0.1158	FALSE	2	2	0	11	0	FALSE	ACH-000554
UACC893_BREAST	MT-ND6--MT-TE	4	4	MT-ND6	1029	chrM:14645:-	MT-TE	4495	chrM:14773:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0.0421	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UACC893_BREAST	1	1	0.0842	FALSE	499	1288	110	792	0	FALSE	ACH-000554
UACC893_BREAST	GSK3B--GPR156	1	15	GSK3B	2071	chr3:119812194:-	GPR156	27067	chr3:119911896:-	ONLY_REF_SPLICE	YES	93	1	0.15	0.94	0.0105	0.1579	LOCAL_REARRANGEMENT:-:[70228],GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,GPR156->G_protein-coupled_receptor_156,chr3:119883492-120003941:-	UACC893_BREAST	0.15	0.94	0.1684	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	LLGL2--RECQL5	3	7	LLGL2	1746	chr17:73521906:+	RECQL5	27111	chr17:73662629:-	INCL_NON_REF_SPLICE	YES	37	938	0.21	0.01	0.0316	0.0737	LOCAL_INVERSION:+:-:[51636],LLGL2->LLGL2,_scribble_cell_polarity_complex_component,chr17:73521161-73571289:+,RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-	UACC893_BREAST	0.01	0.21	0.1053	TRUE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	RARA--KIAA0195	2	11	RARA	6149	chr17:38487648:+	KIAA0195	31302	chr17:73485347:+	ONLY_REF_SPLICE	YES	16	493	0.45	0.03	0.0211	0.1158	{Klijn_CCL:Breast=1},RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,KIAA0195->chr17:73437240-73496171:+	UACC893_BREAST	0.03	0.45	0.1369	TRUE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	RP11-476K15.1--CTD-2015H3.2	4	2	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	9	0	0.4	1	0.0421	0.0211	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	UACC893_BREAST	0.4	1	0.0632	FALSE	0	46	0	73	0	FALSE	ACH-000554
UACC893_BREAST	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0421	0.0211	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	UACC893_BREAST	1	1	0.0632	FALSE	407	2205	196	549	0	FALSE	ACH-000554
UACC893_BREAST	ACTN4--CDH13	4	1	ACTN4	1259	chr19:39138547:+	CDH13	40951	chr16:83158990:+	ONLY_REF_SPLICE	YES	370	3	0.01	0.62	0.0421	0.0105	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+	UACC893_BREAST	0.01	0.62	0.0526	FALSE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	MAP4--DHX30	3	5	MAP4	20425	chr3:47950528:-	DHX30	54537	chr3:47882367:+	ONLY_REF_SPLICE	YES	36	29	0.18	0.22	0.0316	0.0526	LOCAL_INVERSION:-:+:[497],MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,DHX30->DEAH-box_helicase_30,chr3:47844399-47891685:+	UACC893_BREAST	0.18	0.22	0.0842	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MTATP6P1--MTND2P28	3	5	MTATP6P1	1122	chr1:569197:+	MTND2P28	4682	chr1:565020:+	INCL_NON_REF_SPLICE	YES	1248	0	0.01	1	0.0316	0.0526	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	UACC893_BREAST	0.01	1	0.0842	FALSE	20	3	0	12	0	FALSE	ACH-000554
UACC893_BREAST	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	60	1	0.08	0.0421	0.0105	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	UACC893_BREAST	0.08	1	0.0526	TRUE	465	1949	224	605	0	FALSE	ACH-000554
UACC893_BREAST	GRB7--PPP1R1B	1	11	GRB7	7792	chr17:37902041:+	PPP1R1B	20143	chr17:37792069:+	ONLY_REF_SPLICE	YES	1999	321	0.01	0.04	0.0105	0.1158	GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7,PPP1R1B->Oncogene{Bushman},chr17:37782993-37792879:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1B	UACC893_BREAST	0.01	0.04	0.1263	TRUE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	MTATP6P1--MTND2P28	3	3	MTATP6P1	1112	chr1:569187:+	MTND2P28	4908	chr1:565246:+	INCL_NON_REF_SPLICE	YES	997	631	0.01	0.01	0.0316	0.0316	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	UACC893_BREAST	0.01	0.01	0.0632	FALSE	20	3	0	12	0	FALSE	ACH-000554
UACC893_BREAST	RARA--KIAA0195	3	3	RARA	6149	chr17:38487648:+	KIAA0195	35527	chr17:73489572:+	ONLY_REF_SPLICE	YES	16	502	0.27	0.01	0.0316	0.0316	{Klijn_CCL:Breast=1},RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,KIAA0195->chr17:73437240-73496171:+	UACC893_BREAST	0.01	0.27	0.0632	FALSE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	UBE3B--MYH11	3	3	UBE3B	15831	chr12:109940995:+	MYH11	73514	chr16:15815491:-	ONLY_REF_SPLICE	YES	35	0	0.15	1	0.0316	0.0316	UBE3B->chr12:109915207-109974507:+,ubiquitin_protein_ligase_E3B,MYH11->Oncogene{Bushman},chr16:15797029-15950890:-,myosin,_heavy_chain_11,_smooth_muscle	UACC893_BREAST	0.15	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	DOCK5--CDCA2	1	10	DOCK5	1229	chr8:25042466:+	CDCA2	84896	chr8:25364026:+	ONLY_REF_SPLICE	NO	0	62	1	0.15	0.0105	0.1053	NEIGHBORS[40915],DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5,CDCA2->cell_division_cycle_associated_2,chr8:25316513-25365436:+	UACC893_BREAST	0.15	1	0.1158	FALSE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	RP11-476K15.1--CTD-2015H3.2	3	2	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.0316	0.0211	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	UACC893_BREAST	0.36	1	0.0527	FALSE	0	46	0	73	0	FALSE	ACH-000554
UACC893_BREAST	TVP23C--MAP2K3	3	2	TVP23C	2403	chr17:15465507:-	MAP2K3	29367	chr17:21206495:+	ONLY_REF_SPLICE	YES	8	26	0.38	0.16	0.0316	0.0211	TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae),MAP2K3->chr17:21187984-21218552:+,mitogen-activated_protein_kinase_kinase_3	UACC893_BREAST	0.16	0.38	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	CCSER1--HERC6	3	1	CCSER1	1297	chr4:91048982:+	HERC6	59233	chr4:89352314:+	ONLY_REF_SPLICE	YES	6	23	0.4	0.15	0.0316	0.0105	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,HERC6->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_6,chr4:89299891-89364263:+	UACC893_BREAST	0.15	0.4	0.0421	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MTATP6P1--MTND2P28	3	1	MTATP6P1	1121	chr1:569196:+	MTND2P28	5397	chr1:565735:+	INCL_NON_REF_SPLICE	YES	1213	373	0	0.01	0.0316	0.0105	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	UACC893_BREAST	0	0.01	0.0421	FALSE	20	3	0	12	0	FALSE	ACH-000554
UACC893_BREAST	SCARB1--UBC	3	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	49	71	0.08	0.05	0.0316	0.0105	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	UACC893_BREAST	0.05	0.08	0.0421	TRUE	55	66	6	101	0	FALSE	ACH-000554
UACC893_BREAST	MT-TS2--MT-ND4L	3	0	MT-TS2	1027	chrM:12233:+	MT-ND4L	4060	chrM:10470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[1441],MT-TS2->chrM:12207-12265:+,mitochondrially_encoded_tRNA_serine_2_(AGU/C),MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UACC893_BREAST	1	1	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	MTATP6P1--MTND2P28	3	0	MTATP6P1	1086	chr1:569161:+	MTND2P28	4682	chr1:565020:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	UACC893_BREAST	1	1	0.0316	TRUE	20	3	0	12	0	FALSE	ACH-000554
UACC893_BREAST	MTATP6P1--MTND2P28	3	0	MTATP6P1	1123	chr1:569198:+	MTND2P28	5567	chr1:565905:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	UACC893_BREAST	1	1	0.0316	TRUE	20	3	0	12	0	FALSE	ACH-000554
UACC893_BREAST	PCAT1--RP11-382A18.2	3	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	UACC893_BREAST	1	1	0.0316	TRUE	4	84	1	46	0	FALSE	ACH-000554
UACC893_BREAST	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0211	0.0211	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	UACC893_BREAST	0.8	1	0.0422	FALSE	515	4851	409	746	0	FALSE	ACH-000554
UACC893_BREAST	SIAH1--ABCC11	1	5	SIAH1	9331	chr16:48419115:-	ABCC11	54262	chr16:48201277:-	ONLY_REF_SPLICE	NO	16	121	0.27	0.05	0.0105	0.0526	SIAH1->chr16:48390275-48482313:-,siah_E3_ubiquitin_protein_ligase_1,ABCC11->ATP_binding_cassette_subfamily_C_member_11,chr16:48200821-48281479:-	UACC893_BREAST	0.05	0.27	0.0631	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	CHST11--TXNRD1	2	0	CHST11	5138	chr12:104995769:+	TXNRD1	29112	chr12:104705068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	{Klijn_CCL:Ovary=1},CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	UACC893_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	FARP2--CTNNA1	2	0	FARP2	1146	chr2:242295803:+	CTNNA1	60434	chr5:138160219:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	UACC893_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	KIAA0195--LRRC37A11P	2	0	KIAA0195	5501	chr17:73468010:+	LRRC37A11P	31631	chr17:37190423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	KIAA0195->chr17:73437240-73496171:+,LRRC37A11P->chr17:37183530-37209458:+,leucine-rich_repeat_containing_37_member_A11,_pseudogene	UACC893_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	MAP4--SMARCC1	2	0	MAP4	16041	chr3:47956307:-	SMARCC1	60858	chr3:47712207:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	{Klijn_CCL:Skin=1,Colo-Rectal=1},NEIGHBORS[68586],MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-	UACC893_BREAST	1	1	0.0211	FALSE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	NRIP1--AF127936.7	2	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	UACC893_BREAST	1	1	0.0211	FALSE	164	806	69	479	0	FALSE	ACH-000554
UACC893_BREAST	RARA--KIAA0195	1	4	RARA	2263	chr17:38474700:+	KIAA0195	31302	chr17:73485347:+	ONLY_REF_SPLICE	YES	933	493	0.01	0.01	0.0105	0.0421	{Klijn_CCL:Breast=1},RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,KIAA0195->chr17:73437240-73496171:+	UACC893_BREAST	0.01	0.01	0.0526	FALSE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	UACC893_BREAST	1	1	0.0211	FALSE	416	2512	207	587	0	FALSE	ACH-000554
UACC893_BREAST	SAP30BP--ORMDL3	1	4	SAP30BP	3558	chr17:73667943:+	ORMDL3	22105	chr17:38080473:-	ONLY_REF_SPLICE	YES	838	1211	0.01	0	0.0105	0.0421	SAP30BP->SAP30_binding_protein,chr17:73663196-73704142:+,ORMDL3->ORMDL_sphingolipid_biosynthesis_regulator_3,chr17:38077294-38083854:-	UACC893_BREAST	0	0.01	0.0526	FALSE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	SAP30BP--ORMDL3	1	4	SAP30BP	3558	chr17:73667943:+	ORMDL3	22100	chr17:38080478:-	ONLY_REF_SPLICE	NO	838	1231	0.01	0	0.0105	0.0421	SAP30BP->SAP30_binding_protein,chr17:73663196-73704142:+,ORMDL3->ORMDL_sphingolipid_biosynthesis_regulator_3,chr17:38077294-38083854:-	UACC893_BREAST	0	0.01	0.0526	FALSE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	STAT5B--CELSR1	2	0	STAT5B	1460	chr17:40428266:-	CELSR1	35125	chr22:46807656:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B,CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-	UACC893_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	WIPF2--HSPA9	2	0	WIPF2	1189	chr17:38375744:+	HSPA9	28835	chr5:137895780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	UACC893_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	CCSER1--HERC6	1	3	CCSER1	1297	chr4:91048982:+	HERC6	58062	chr4:89349732:+	ONLY_REF_SPLICE	YES	6	30	0.4	0.12	0.0105	0.0316	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,HERC6->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_6,chr4:89299891-89364263:+	UACC893_BREAST	0.12	0.4	0.0421	TRUE	0	0	0	1	0	TRUE	ACH-000554
UACC893_BREAST	PLEKHF2--KB-1047C11.2	1	2	PLEKHF2	1227	chr8:96146258:+	KB-1047C11.2	12166	chr8:96444854:+	ONLY_REF_SPLICE	NO	97	1	0.03	0.75	0.0105	0.0211	NEIGHBORS[47772],PLEKHF2->chr8:96146032-96168912:+,pleckstrin_homology_and_FYVE_domain_containing_2,KB-1047C11.2->chr8:96216684-96822364:+	UACC893_BREAST	0.03	0.75	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	RP11-155G15.2--RP11-1E3.1	1	2	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0105	0.0211	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	UACC893_BREAST	1	1	0.0316	FALSE	46	201	11	112	0	FALSE	ACH-000554
UACC893_BREAST	RP11-155G15.2--RP11-1E3.1	1	2	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	7991	chr5:96856933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0105	0.0211	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	UACC893_BREAST	1	1	0.0316	FALSE	0	1	1	12	0	FALSE	ACH-000554
UACC893_BREAST	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	34	1	0.08	0.0105	0.0211	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	UACC893_BREAST	0.08	1	0.0316	TRUE	458	1351	185	561	0	FALSE	ACH-000554
UACC893_BREAST	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0105	0.0211	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	UACC893_BREAST	1	1	0.0316	FALSE	275	511	55	178	0	FALSE	ACH-000554
UACC893_BREAST	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.75	0.75	0.0105	0.0211	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	UACC893_BREAST	0.75	0.75	0.0316	FALSE	467	2173	244	435	0	FALSE	ACH-000554
UACC893_BREAST	ERBB2--CTTN	1	1	ERBB2	16192	chr17:37872192:+	CTTN	42889	chr11:70269046:+	ONLY_REF_SPLICE	YES	6814	404	0	0	0.0105	0.0105	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin	UACC893_BREAST	0	0	0.021	FALSE	1	8	0	1	0	FALSE	ACH-000554
UACC893_BREAST	ERBB2--FLNA	1	1	ERBB2	16192	chr17:37872192:+	FLNA	44395	chrX:153583440:-	ONLY_REF_SPLICE	YES	6816	626	0	0	0.0105	0.0105	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,FLNA->chrX:153576892-153603006:-,filamin_A	UACC893_BREAST	0	0	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000554
UACC893_BREAST	RSPRY1--FAM192A	1	1	RSPRY1	1315	chr16:57220363:+	FAM192A	29396	chr16:57207781:-	ONLY_REF_SPLICE	YES	15	194	0.12	0.01	0.0105	0.0105	LOCAL_INVERSION:+:-:[21],RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	UACC893_BREAST	0.01	0.12	0.021	FALSE	0	0	0	2	0	FALSE	ACH-000554
UACC893_BREAST	SLC16A14--DENND4C	1	1	SLC16A14	4174	chr2:230923810:-	DENND4C	42837	chr9:19356970:+	ONLY_REF_SPLICE	YES	28	19	0.07	0.1	0.0105	0.0105	SLC16A14->chr2:230899698-230933715:-,solute_carrier_family_16_member_14,DENND4C->DENN_domain_containing_4C,chr9:19230433-19374139:+	UACC893_BREAST	0.07	0.1	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000554
NCIH1184_LUNG	RERE--SLC2A5	254	187	RERE	8908	chr1:8674620:-	SLC2A5	46985	chr1:9118309:-	ONLY_REF_SPLICE	YES	88	0	0.83	1	3.0168	2.221	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC2A5->chr1:9095166-9148537:-,solute_carrier_family_2_member_5	NCIH1184_LUNG	0.83	1	5.2378	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	SF3A3--GNL2	183	78	SF3A3	9340	chr1:38444392:-	GNL2	34972	chr1:38033958:-	ONLY_REF_SPLICE	YES	1216	798	0.18	0.25	2.1735	0.9264	SF3A3->chr1:38422647-38456593:-,splicing_factor_3a_subunit_3,GNL2->G_protein_nucleolar_2,chr1:38032417-38061536:-	NCIH1184_LUNG	0.18	0.25	3.0999	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	RP11-123O10.4--GRIP1	186	45	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	1	2.2091	0.5345	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1184_LUNG	1	1	2.7436	FALSE	416	2512	207	587	0	FALSE	ACH-000523
NCIH1184_LUNG	STAT3--PTRF	83	86	STAT3	1290	chr17:40540297:-	PTRF	28979	chr17:40557406:-	ONLY_REF_SPLICE	YES	256	31	0.4	0.84	0.9858	1.0214	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:-:[13884],STAT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:40465342-40540586:-,signal_transducer_and_activator_of_transcription_3,PTRF->chr17:40554470-40575535:-,polymerase_I_and_transcript_release_factor	NCIH1184_LUNG	0.4	0.84	2.0072	TRUE	0	6	1	3	4	TRUE	ACH-000523
NCIH1184_LUNG	TIMM23B--LINC00843	83	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9858	0.3563	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1184_LUNG	0.99	1	1.3421	TRUE	508	994	45	981	0	FALSE	ACH-000523
NCIH1184_LUNG	XPO7--LSM1	78	2	XPO7	1120	chr8:21777299:+	LSM1	36871	chr8:38029551:-	ONLY_REF_SPLICE	YES	1	342	0.99	0.19	0.9264	0.0238	XPO7->chr8:21777180-21864096:+,exportin_7,LSM1->LSM1_homolog,_mRNA_degradation_associated,chr8:38020839-38034248:-	NCIH1184_LUNG	0.19	0.99	0.9502	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	MACF1--RHBDL2	56	20	MACF1	24617	chr1:39753234:+	RHBDL2	129364	chr1:39385009:-	ONLY_REF_SPLICE	YES	132	19	0.37	0.8	0.6651	0.2375	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,RHBDL2->chr1:39351479-39407471:-,rhomboid,_veinlet-like_2_(Drosophila)	NCIH1184_LUNG	0.37	0.8	0.9026	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	CTD-2008L17.1--RP11-456O19.2	46	26	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	7	0	0.91	1	0.5463	0.3088	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1184_LUNG	0.91	1	0.8551	FALSE	20	187	4	79	0	FALSE	ACH-000523
NCIH1184_LUNG	TIMM23--RP11-464F9.1	49	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	173	11	0.24	0.83	0.582	0.0713	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1184_LUNG	0.24	0.83	0.6533	TRUE	519	3926	326	965	0	FALSE	ACH-000523
NCIH1184_LUNG	PRKRIP1--CUX1	41	37	PRKRIP1	6802	chr7:102038145:+	CUX1	48850	chr7:101877332:+	ONLY_REF_SPLICE	YES	89	180	0.47	0.3	0.487	0.4395	LOCAL_REARRANGEMENT:+:[77070],PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	NCIH1184_LUNG	0.3	0.47	0.9265	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	ZNF654--HMGB2	47	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5582	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1184_LUNG	1	1	0.5582	TRUE	0	0	0	518	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-TA--MT-TC	34	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4038	0.0594	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1184_LUNG	1	1	0.4632	FALSE	462	80	0	856	0	FALSE	ACH-000523
NCIH1184_LUNG	STAT3--PTRF	10	93	STAT3	1290	chr17:40540297:-	PTRF	27420	chr17:40575203:-	INCL_NON_REF_SPLICE	YES	256	12	0.29	0.9	0.1188	1.1046	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:-:[13884],STAT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:40465342-40540586:-,signal_transducer_and_activator_of_transcription_3,PTRF->chr17:40554470-40575535:-,polymerase_I_and_transcript_release_factor	NCIH1184_LUNG	0.29	0.9	1.2234	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	MT-ND4--MT-ND4L	4	79	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	8	0	0.91	1	0.0475	0.9383	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1184_LUNG	0.91	1	0.9858	FALSE	344	826	44	306	0	FALSE	ACH-000523
NCIH1184_LUNG	RP11-444D3.1--SOX5	20	9	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.2375	0.1069	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1184_LUNG	0.97	1	0.3444	TRUE	477	1352	189	275	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	3	65	MT-CO3	1533	chrM:9739:+	MT-ATP6	5050	chrM:8792:+	INCL_NON_REF_SPLICE	YES	1	20	0.99	0.77	0.0356	0.772	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.77	0.99	0.8076	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	18	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.2138	0.0238	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.91	1	0.2376	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	5	53	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	9	0.97	0.87	0.0594	0.6295	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.87	0.97	0.6889	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	PRKRIP1--CUX1	12	23	PRKRIP1	5723	chr7:102036984:+	CUX1	48850	chr7:101877332:+	ONLY_REF_SPLICE	YES	114	180	0.23	0.16	0.1425	0.2732	LOCAL_REARRANGEMENT:+:[77070],PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	NCIH1184_LUNG	0.16	0.23	0.4157	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	RP11-680G10.1--GSE1	17	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	126	1	0.12	0.2019	0.0119	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1184_LUNG	0.12	1	0.2138	TRUE	465	1949	224	605	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	3	56	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	4	8	0.94	0.88	0.0356	0.6651	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.88	0.94	0.7007	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	RP11-123O10.4--GRIP1	13	15	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.1544	0.1782	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1184_LUNG	0.97	1	0.3326	FALSE	93	270	15	244	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	3	54	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	2	46	0.97	0.55	0.0356	0.6414	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.55	0.97	0.677	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	6	39	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	3	7	0.94	0.87	0.0713	0.4632	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.87	0.94	0.5345	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-ND4--MT-ND4L	3	49	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	0	0.93	1	0.0356	0.582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1184_LUNG	0.93	1	0.6176	FALSE	344	821	44	306	0	FALSE	ACH-000523
NCIH1184_LUNG	SF3A3--GNL2	10	21	SF3A3	8595	chr1:38445137:-	GNL2	34972	chr1:38033958:-	ONLY_REF_SPLICE	YES	1166	798	0.03	0.04	0.1188	0.2494	SF3A3->chr1:38422647-38456593:-,splicing_factor_3a_subunit_3,GNL2->G_protein_nucleolar_2,chr1:38032417-38061536:-	NCIH1184_LUNG	0.03	0.04	0.3682	TRUE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	NFYC--MYCL	14	3	NFYC	11226	chr1:41204620:+	MYCL	30364	chr1:40363642:-	ONLY_REF_SPLICE	YES	803	312	0.02	0.05	0.1663	0.0356	NFYC->chr1:41157320-41237275:+,nuclear_transcription_factor_Y_subunit_gamma,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH1184_LUNG	0.02	0.05	0.2019	TRUE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	RP11-123O10.4--GRIP1	3	45	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	YES	0	2	1	0.96	0.0356	0.5345	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1184_LUNG	0.96	1	0.5701	FALSE	9	21	5	22	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	5	36	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	2	6	0.95	0.87	0.0594	0.4276	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.87	0.95	0.487	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	RP11-680G10.1--GSE1	12	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	21	1	0.49	0.1425	0.095	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1184_LUNG	0.49	1	0.2375	TRUE	458	1351	185	561	0	FALSE	ACH-000523
NCIH1184_LUNG	CTD-2008L17.1--RP11-456O19.2	11	10	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	7	3	0.75	0.88	0.1306	0.1188	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1184_LUNG	0.75	0.88	0.2494	FALSE	33	240	4	98	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	3	40	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	2	7	0.96	0.86	0.0356	0.4751	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.86	0.96	0.5107	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	PLEKHA1--TACC2	12	4	PLEKHA1	11696	chr10:124172561:+	TACC2	57415	chr10:123954555:+	ONLY_REF_SPLICE	YES	576	52	0.03	0.24	0.1425	0.0475	PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1,TACC2->chr10:123748689-124014060:+,transforming_acidic_coiled-coil_containing_protein_2	NCIH1184_LUNG	0.03	0.24	0.19	TRUE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	AP003900.6--AP000345.1	12	3	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	11	0	0.58	1	0.1425	0.0356	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1184_LUNG	0.58	1	0.1781	TRUE	0	8	0	37	1	FALSE	ACH-000523
NCIH1184_LUNG	MT-ND4--MT-ND4L	6	24	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8716	0	0	1	0.0713	0.2851	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1184_LUNG	0	1	0.3564	FALSE	328	800	43	304	0	FALSE	ACH-000523
NCIH1184_LUNG	PID1--DNER	9	10	PID1	2483	chr2:230127399:-	DNER	28567	chr2:230253112:-	ONLY_REF_SPLICE	YES	138	646	0.12	0.03	0.1069	0.1188	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:-:[86344],PID1->chr2:229715242-230136001:-,phosphotyrosine_interaction_domain_containing_1,DNER->chr2:230222345-230579274:-,delta/notch_like_EGF_repeat_containing	NCIH1184_LUNG	0.03	0.12	0.2257	TRUE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	SF3A3--GNL2	1	40	SF3A3	9072	chr1:38444660:-	GNL2	34972	chr1:38033958:-	ONLY_REF_SPLICE	NO	1379	798	0.03	0.05	0.0119	0.4751	SF3A3->chr1:38422647-38456593:-,splicing_factor_3a_subunit_3,GNL2->G_protein_nucleolar_2,chr1:38032417-38061536:-	NCIH1184_LUNG	0.03	0.05	0.487	TRUE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	ZNF654--HMGB2	11	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1306	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1184_LUNG	1	1	0.1306	TRUE	0	0	0	518	0	FALSE	ACH-000523
NCIH1184_LUNG	GNGT1--AC002076.10	8	7	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	8	0	0.65	1	0.095	0.0831	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	NCIH1184_LUNG	0.65	1	0.1781	FALSE	0	28	0	37	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	8	7	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.095	0.0831	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.88	1	0.1781	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-ND6--MT-TE	8	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.095	0.0831	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1184_LUNG	0.94	1	0.1781	FALSE	499	1288	110	792	0	FALSE	ACH-000523
NCIH1184_LUNG	PRKRIP1--CUX1	8	7	PRKRIP1	4162	chr7:102016769:+	CUX1	48850	chr7:101877332:+	ONLY_REF_SPLICE	YES	60	180	0.2	0.08	0.095	0.0831	LOCAL_REARRANGEMENT:+:[77070],PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	NCIH1184_LUNG	0.08	0.2	0.1781	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	HSP90AB1--MT-RNR2	9	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2966	0	0	1	0.1069	0.0238	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1184_LUNG	0	1	0.1307	FALSE	13	9	0	364	0	FALSE	ACH-000523
NCIH1184_LUNG	TRIB3--CCM2L	6	13	TRIB3	5594	chr20:372223:+	CCM2L	15778	chr20:30610463:+	ONLY_REF_SPLICE	YES	23	5	0.45	0.79	0.0713	0.1544	TRIB3->chr20:361261-378203:+,tribbles_pseudokinase_3,CCM2L->CCM2_like_scaffolding_protein,chr20:30598245-30619984:+	NCIH1184_LUNG	0.45	0.79	0.2257	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	TANGO6--SNTB2	9	0	TANGO6	24871	chr16:69074324:+	SNTB2	36840	chr16:69317951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1069	0	TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog,SNTB2->chr16:69221032-69342955:+,syntrophin_beta_2	NCIH1184_LUNG	1	1	0.1069	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	MT-ND4--MT-ND4L	6	11	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	660	0	0.03	1	0.0713	0.1306	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1184_LUNG	0.03	1	0.2019	FALSE	344	827	44	306	0	FALSE	ACH-000523
NCIH1184_LUNG	RRAGC--MACF1	7	7	RRAGC	9109	chr1:39311611:-	MACF1	39285	chr1:39757582:+	ONLY_REF_SPLICE	YES	106	126	0.12	0.1	0.0831	0.0831	RRAGC->Ras_related_GTP_binding_C,chr1:39303870-39325495:-,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	NCIH1184_LUNG	0.1	0.12	0.1662	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	HSP90AB1--MT-RNR2	8	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2974	0	0	1	0.095	0.0238	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1184_LUNG	0	1	0.1188	FALSE	13	9	0	364	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-TA--MT-TC	7	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0831	0.0594	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1184_LUNG	1	1	0.1425	FALSE	462	80	0	856	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	7	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0831	0.0475	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.85	1	0.1306	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	PID1--DNER	6	8	PID1	1272	chr2:230135730:-	DNER	28567	chr2:230253112:-	ONLY_REF_SPLICE	YES	118	646	0.11	0.02	0.0713	0.095	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:-:[86344],PID1->chr2:229715242-230136001:-,phosphotyrosine_interaction_domain_containing_1,DNER->chr2:230222345-230579274:-,delta/notch_like_EGF_repeat_containing	NCIH1184_LUNG	0.02	0.11	0.1663	TRUE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	5	11	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0594	0.1306	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.89	1	0.19	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	RERE--SLC2A5	2	23	RERE	8908	chr1:8674620:-	SLC2A5	49949	chr1:9107793:-	ONLY_REF_SPLICE	YES	88	133	0.22	0.16	0.0238	0.2732	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC2A5->chr1:9095166-9148537:-,solute_carrier_family_2_member_5	NCIH1184_LUNG	0.16	0.22	0.297	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	NPM1P24--SET	7	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0831	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1184_LUNG	1	1	0.0831	TRUE	0	0	0	434	0	FALSE	ACH-000523
NCIH1184_LUNG	KANSL1--RP11-707O23.5	5	6	KANSL1	8599	chr17:44230270:-	RP11-707O23.5	32091	chr17:43679427:-	INCL_NON_REF_SPLICE	YES	157	0	0.07	1	0.0594	0.0713	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,RP11-707O23.5->chr17:43678235-43679706:-	NCIH1184_LUNG	0.07	1	0.1307	TRUE	0	1	0	2	0	TRUE	ACH-000523
NCIH1184_LUNG	NFYC--MYCL	5	6	NFYC	11226	chr1:41204620:+	MYCL	27532	chr1:40367115:-	ONLY_REF_SPLICE	YES	803	174	0.01	0.06	0.0594	0.0713	NFYC->chr1:41157320-41237275:+,nuclear_transcription_factor_Y_subunit_gamma,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH1184_LUNG	0.01	0.06	0.1307	TRUE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	NPEPL1--DNAJC5	6	1	NPEPL1	14222	chr20:57290918:+	DNAJC5	27854	chr20:62566161:+	INCL_NON_REF_SPLICE	YES	1	85	0.88	0.08	0.0713	0.0119	NPEPL1->aminopeptidase-like_1,chr20:57264187-57294294:+,DNAJC5->DnaJ_heat_shock_protein_family_(Hsp40)_member_C5,chr20:62526518-62567384:+	NCIH1184_LUNG	0.08	0.88	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	MT-ND4--MT-ND4L	3	12	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9849	0	0	1	0.0356	0.1425	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1184_LUNG	0	1	0.1781	FALSE	343	822	44	305	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0713	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1184_LUNG	1	1	0.0713	FALSE	499	1288	110	792	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	3	11	MT-CO3	1109	chrM:9315:+	MT-ATP6	5410	chrM:9152:+	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0356	0.1306	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.88	1	0.1662	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	3	11	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	NO	0	8	1	0.64	0.0356	0.1306	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.64	1	0.1662	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-ND4--MT-ND4L	3	11	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	31	0	0.31	1	0.0356	0.1306	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1184_LUNG	0.31	1	0.1662	FALSE	344	826	44	306	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-ND4--MT-ND4L	3	10	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.0356	0.1188	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1184_LUNG	0.87	1	0.1544	FALSE	344	821	44	306	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-TA--MT-TC	4	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0.0713	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1184_LUNG	1	1	0.1188	FALSE	462	80	0	856	0	FALSE	ACH-000523
NCIH1184_LUNG	C15orf57--CBX3	5	1	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	27	48	0.18	0.11	0.0594	0.0119	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1184_LUNG	0.11	0.18	0.0713	TRUE	267	562	48	632	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	3	9	MT-CO3	1123	chrM:9329:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.0356	0.1069	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.86	1	0.1425	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	3	9	MT-CO3	1127	chrM:9333:+	MT-ATP6	5425	chrM:9167:+	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.0356	0.1069	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.86	1	0.1425	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	RP11-21A7A.2--MARK2	5	1	RP11-21A7A.2	1190	chr11:63803631:+	MARK2	15064	chr11:63662631:+	ONLY_REF_SPLICE	YES	1	32	0.86	0.16	0.0594	0.0119	RP11-21A7A.2->chr11:63803442-63871125:+,MARK2->chr11:63606400-63678491:+,microtubule_affinity_regulating_kinase_2	NCIH1184_LUNG	0.16	0.86	0.0713	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	3	8	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0356	0.095	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.85	1	0.1306	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	5	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	1	1	0.0594	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1184_LUNG	1	1	0.0594	FALSE	351	233	23	137	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1184_LUNG	1	1	0.0594	FALSE	344	821	44	306	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1184_LUNG	1	1	0.0594	FALSE	499	1288	110	792	0	FALSE	ACH-000523
NCIH1184_LUNG	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1184_LUNG	1	1	0.0594	TRUE	0	0	0	434	0	FALSE	ACH-000523
NCIH1184_LUNG	PPM1D--RP11-15E18.4	4	4	PPM1D	5213	chr17:58711338:+	RP11-15E18.4	15236	chr17:58654558:+	ONLY_REF_SPLICE	YES	337	0	0.02	1	0.0475	0.0475	LOCAL_REARRANGEMENT:+:[13560],PPM1D->Oncogene{Bushman},chr17:58677544-58741849:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1D,RP11-15E18.4->chr17:58641908-58663984:+	NCIH1184_LUNG	0.02	1	0.095	TRUE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	RRAGC--PABPC4	4	4	RRAGC	9109	chr1:39311611:-	PABPC4	16649	chr1:40038258:-	ONLY_REF_SPLICE	YES	106	312	0.07	0.03	0.0475	0.0475	RRAGC->Ras_related_GTP_binding_C,chr1:39303870-39325495:-,PABPC4->chr1:40026488-40042462:-,poly(A)_binding_protein_cytoplasmic_4	NCIH1184_LUNG	0.03	0.07	0.095	TRUE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	GNGT1--AC002076.10	3	7	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	10	0	0.5	1	0.0356	0.0831	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	NCIH1184_LUNG	0.5	1	0.1187	FALSE	0	10	0	30	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-ND6--MT-TE	4	3	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0.0356	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1184_LUNG	1	1	0.0831	FALSE	499	1288	110	792	0	FALSE	ACH-000523
NCIH1184_LUNG	AP003900.6--AP000345.1	4	1	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	6	0	0.45	1	0.0475	0.0119	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1184_LUNG	0.45	1	0.0594	TRUE	4	17	0	31	0	FALSE	ACH-000523
NCIH1184_LUNG	C20orf112--CHRNA6	4	1	C20orf112	1505	chr20:31172372:-	CHRNA6	32910	chr8:42620347:-	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0475	0.0119	C20orf112->chr20:31030862-31172876:-,CHRNA6->cholinergic_receptor_nicotinic_alpha_6_subunit,chr8:42607763-42651535:-	NCIH1184_LUNG	0.56	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	MT-ND3--MT-CO3	4	1	MT-ND3	1061	chrM:10119:+	MT-CO3	5073	chrM:9933:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0.0119	LOCAL_REARRANGEMENT:+:[69],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH1184_LUNG	1	1	0.0594	FALSE	2	2	0	11	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-ND4--MT-ND4L	3	5	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	26	0	0.24	1	0.0356	0.0594	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1184_LUNG	0.24	1	0.095	FALSE	344	826	44	306	0	FALSE	ACH-000523
NCIH1184_LUNG	MACF1--INPP5B	3	4	MACF1	6636	chr1:39571389:+	INPP5B	135609	chr1:38357126:-	ONLY_REF_SPLICE	YES	56	43	0.11	0.14	0.0356	0.0475	GTEx&tcga_normals:1/3694=0.03%,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,INPP5B->chr1:38326369-38412729:-,inositol_polyphosphate-5-phosphatase_B	NCIH1184_LUNG	0.11	0.14	0.0831	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	1	1	0.0475	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	RP11-444D3.1--SOX5	3	4	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	1	1	0.88	0.88	0.0356	0.0475	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1184_LUNG	0.88	0.88	0.0831	TRUE	274	363	69	150	0	FALSE	ACH-000523
NCIH1184_LUNG	ZNF738--CHMP1A	4	0	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0475	0	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH1184_LUNG	1	1	0.0475	TRUE	1	20	1	28	3	FALSE	ACH-000523
NCIH1184_LUNG	RP13-188A5.1--KLF8	3	3	RP13-188A5.1	2795	chrX:56041394:+	KLF8	7929	chrX:56276664:+	INCL_NON_REF_SPLICE	YES	0	22	1	0.21	0.0356	0.0356	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	NCIH1184_LUNG	0.21	1	0.0712	TRUE	1	15	1	5	11	TRUE	ACH-000523
NCIH1184_LUNG	CPSF6--C9orf3	3	2	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	197	25	0.02	0.17	0.0356	0.0238	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	NCIH1184_LUNG	0.02	0.17	0.0594	TRUE	53	99	2	44	0	FALSE	ACH-000523
NCIH1184_LUNG	CPSF6--CSNK1D	3	2	CPSF6	11046	chr12:69656342:+	CSNK1D	27622	chr17:80211120:-	ONLY_REF_SPLICE	YES	197	333	0.02	0.01	0.0356	0.0238	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Lung=[count:3=pct:1.8],Ovary=[count:1=pct:1.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=3;pct=0.03%;dist=Lung=3},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	NCIH1184_LUNG	0.01	0.02	0.0594	FALSE	6	4	0	4	0	FALSE	ACH-000523
NCIH1184_LUNG	CTD-2008L17.1--RP11-456O19.2	1	10	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	13011	chr18:53755642:+	ONLY_REF_SPLICE	YES	7	4	0.61	0.73	0.0119	0.1188	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1184_LUNG	0.61	0.73	0.1307	FALSE	0	12	0	8	0	FALSE	ACH-000523
NCIH1184_LUNG	DSCR3--TTC3	3	2	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	43	218	0.1	0.02	0.0356	0.0238	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH1184_LUNG	0.02	0.1	0.0594	TRUE	0	9	0	44	1	FALSE	ACH-000523
NCIH1184_LUNG	PID1--DNER	1	10	PID1	7106	chr2:230020534:-	DNER	15776	chr2:230456604:-	ONLY_REF_SPLICE	YES	98	185	0.1	0.06	0.0119	0.1188	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:-:[86344],PID1->chr2:229715242-230136001:-,phosphotyrosine_interaction_domain_containing_1,DNER->chr2:230222345-230579274:-,delta/notch_like_EGF_repeat_containing	NCIH1184_LUNG	0.06	0.1	0.1307	TRUE	0	4	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	CTSB--HM13	3	1	CTSB	2448	chr8:11725510:-	HM13	31994	chr20:30136480:+	ONLY_REF_SPLICE	YES	28	200	0.12	0.02	0.0356	0.0119	CTSB->Oncogene{Bushman},cathepsin_B,chr8:11700033-11726957:-,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	NCIH1184_LUNG	0.02	0.12	0.0475	TRUE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	MACF1--INPP5B	3	1	MACF1	3305	chr1:39550110:+	INPP5B	135609	chr1:38357126:-	ONLY_REF_SPLICE	YES	53	43	0.07	0.09	0.0356	0.0119	GTEx&tcga_normals:1/3694=0.03%,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,INPP5B->chr1:38326369-38412729:-,inositol_polyphosphate-5-phosphatase_B	NCIH1184_LUNG	0.07	0.09	0.0475	TRUE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0.0119	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	1	1	0.0475	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0356	0.0119	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.8	1	0.0475	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	3	0	0.57	1	0.0356	0.0119	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1184_LUNG	0.57	1	0.0475	FALSE	189	492	56	216	0	FALSE	ACH-000523
NCIH1184_LUNG	PVT1--SNTB1	2	5	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	12	5	0.37	0.58	0.0238	0.0594	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH1184_LUNG	0.37	0.58	0.0832	TRUE	0	0	0	25	0	FALSE	ACH-000523
NCIH1184_LUNG	EEF2--RPS28	3	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH1184_LUNG	1	1	0.0356	TRUE	0	0	0	100	0	FALSE	ACH-000523
NCIH1184_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1184_LUNG	1	1	0.0356	FALSE	344	821	44	306	0	FALSE	ACH-000523
NCIH1184_LUNG	ZNF519--RHOT1	3	0	ZNF519	2343	chr18:14124349:-	RHOT1	28702	chr17:30509776:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,RHOT1->chr17:30469473-30580393:+,ras_homolog_family_member_T1	NCIH1184_LUNG	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	GDAP1--RP11-758M4.1	2	3	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	157	0	0.03	1	0.0238	0.0356	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH1184_LUNG	0.03	1	0.0594	TRUE	7	28	0	43	0	FALSE	ACH-000523
NCIH1184_LUNG	KANSL1--LRRC37A	2	3	KANSL1	8599	chr17:44230270:-	LRRC37A	37753	chr17:44377160:+	ONLY_REF_SPLICE	YES	157	69	0.03	0.07	0.0238	0.0356	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	NCIH1184_LUNG	0.03	0.07	0.0594	TRUE	9	6	1	5	0	FALSE	ACH-000523
NCIH1184_LUNG	MACF1--INPP5B	1	7	MACF1	6636	chr1:39571389:+	INPP5B	125966	chr1:38412006:-	ONLY_REF_SPLICE	YES	56	0	0.12	1	0.0119	0.0831	GTEx&tcga_normals:1/3694=0.03%,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,INPP5B->chr1:38326369-38412729:-,inositol_polyphosphate-5-phosphatase_B	NCIH1184_LUNG	0.12	1	0.095	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	MACF1--INPP5B	2	3	MACF1	3305	chr1:39550110:+	INPP5B	125966	chr1:38412006:-	ONLY_REF_SPLICE	YES	53	0	0.09	1	0.0238	0.0356	GTEx&tcga_normals:1/3694=0.03%,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,INPP5B->chr1:38326369-38412729:-,inositol_polyphosphate-5-phosphatase_B	NCIH1184_LUNG	0.09	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	RP11-1L12.3--SLC5A12	1	7	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	3	0	0.73	1	0.0119	0.0831	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	NCIH1184_LUNG	0.73	1	0.095	TRUE	3	101	0	60	0	FALSE	ACH-000523
NCIH1184_LUNG	TRIB3--CCM2L	2	3	TRIB3	5594	chr20:372223:+	CCM2L	16914	chr20:30613659:+	ONLY_REF_SPLICE	NO	23	8	0.18	0.38	0.0238	0.0356	TRIB3->chr20:361261-378203:+,tribbles_pseudokinase_3,CCM2L->CCM2_like_scaffolding_protein,chr20:30598245-30619984:+	NCIH1184_LUNG	0.18	0.38	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	FGF14-IT1--FGF14	2	1	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	47	1	0.06	0.0238	0.0119	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	NCIH1184_LUNG	0.06	1	0.0357	TRUE	71	201	23	28	0	FALSE	ACH-000523
NCIH1184_LUNG	RERE--SLC2A5	1	5	RERE	7782	chr1:8684369:-	SLC2A5	49949	chr1:9107793:-	ONLY_REF_SPLICE	YES	196	133	0.03	0.04	0.0119	0.0594	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC2A5->chr1:9095166-9148537:-,solute_carrier_family_2_member_5	NCIH1184_LUNG	0.03	0.04	0.0713	TRUE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0238	0.0119	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1184_LUNG	1	1	0.0357	TRUE	62	24	1	171	0	FALSE	ACH-000523
NCIH1184_LUNG	AFG3L2--TNFRSF19	2	0	AFG3L2	9384	chr18:12356693:-	TNFRSF19	27801	chr13:24164289:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	AFG3L2->AFG3_like_matrix_AAA_peptidase_subunit_2,chr18:12328943-12377313:-,TNFRSF19->chr13:24144509-24250232:+,tumor_necrosis_factor_receptor_superfamily_member_19	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	ARMC7--ARFIP1	2	0	ARMC7	1655	chr17:73106701:+	ARFIP1	19685	chr4:153803875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	ARMC7->armadillo_repeat_containing_7,chr17:73106047-73126360:+,ARFIP1->ADP_ribosylation_factor_interacting_protein_1,chr4:153701089-153839615:+	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	BAZ2B--GPD2	2	0	BAZ2B	43269	chr2:160239070:-	GPD2	71964	chr2:157406120:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-,GPD2->chr2:157291802-157470247:+,glycerol-3-phosphate_dehydrogenase_2	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	FAT3--CHORDC1	2	0	FAT3	5624	chr11:92258114:+	CHORDC1	51422	chr11:89951352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	FAT3->FAT_atypical_cadherin_3,chr11:92085262-92629618:+,CHORDC1->chr11:89934328-89956532:-,cysteine_and_histidine_rich_domain_containing_1	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	LEF1--RNF38	2	0	LEF1	8204	chr4:109004512:-	RNF38	27776	chr9:36390613:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	LEF1->Oncogene{Bushman},chr4:108968701-109090112:-,lymphoid_enhancer_binding_factor_1,RNF38->chr9:36336393-36487545:-,ring_finger_protein_38	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	LINC00299--AC007464.1	2	0	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	NCIH1184_LUNG	1	1	0.0238	TRUE	67	49	0	25	0	FALSE	ACH-000523
NCIH1184_LUNG	LINC00648--SLK	2	0	LINC00648	2159	chr14:48259109:-	SLK	11739	chr10:105750433:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	LINC00648->chr14:48234157-48264295:-,long_intergenic_non-protein_coding_RNA_648,SLK->STE20_like_kinase,chr10:105726959-105788991:+	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	PICALM--SYTL2	2	0	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	NCIH1184_LUNG	1	1	0.0238	TRUE	4	2	0	20	0	FALSE	ACH-000523
NCIH1184_LUNG	PTPN1--ZFAS1	2	0	PTPN1	5666	chr20:49191191:+	ZFAS1	19806	chr20:47905582:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	PTPN1->chr20:49126891-49201299:+,protein_tyrosine_phosphatase,_non-receptor_type_1,ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+	NCIH1184_LUNG	1	1	0.0238	TRUE	1	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	RNGTT--RARS2	2	0	RNGTT	14816	chr6:89388072:-	RARS2	23999	chr6:88279308:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},RNGTT->RNA_guanylyltransferase_and_5'-phosphatase,chr6:89319985-89673348:-,RARS2->arginyl-tRNA_synthetase_2,_mitochondrial,chr6:88224096-88299721:-	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	RPS15--CIRBP	2	0	RPS15	1070	chr19:1438427:+	CIRBP	14303	chr19:1270927:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	RPS15->chr19:1438358-1440583:+,ribosomal_protein_S15,CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	SNTG1--ATP6V1H	2	0	SNTG1	24691	chr8:51621538:+	ATP6V1H	43655	chr8:54714456:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	SNTG1->chr8:50822349-51706678:+,syntrophin_gamma_1,ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	VPS45--USP48	2	0	VPS45	15518	chr1:150082742:+	USP48	33409	chr1:22056322:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	VPS45->chr1:150039369-150117505:+,vacuolar_protein_sorting_45_homolog,USP48->chr1:22004791-22110099:-,ubiquitin_specific_peptidase_48	NCIH1184_LUNG	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000523
NCIH1184_LUNG	RP11-1L12.3--SLC5A12	1	3	RP11-1L12.3	3619	chr11:27238864:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	19	0	0.17	1	0.0119	0.0356	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	NCIH1184_LUNG	0.17	1	0.0475	TRUE	0	0	0	2	0	FALSE	ACH-000523
NCIH1184_LUNG	CTC-786C10.1--GSE1	1	2	CTC-786C10.1	1532	chr16:85205413:+	GSE1	8143	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	21	1	0.12	0.0119	0.0238	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1184_LUNG	0.12	1	0.0357	TRUE	5	1	0	10	0	FALSE	ACH-000523
NCIH1184_LUNG	TULP4--RP11-732M18.3	1	2	TULP4	2609	chr6:158735300:+	RP11-732M18.3	28124	chr6:158703295:+	ONLY_REF_SPLICE	NO	30	0	0.09	1	0.0119	0.0238	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	NCIH1184_LUNG	0.09	1	0.0357	TRUE	121	131	5	12	0	FALSE	ACH-000523
NCIH1184_LUNG	TULP4--RP11-732M18.3	1	2	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	NO	30	4	0.09	0.43	0.0119	0.0238	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	NCIH1184_LUNG	0.09	0.43	0.0357	TRUE	126	140	6	21	0	FALSE	ACH-000523
NCIH1184_LUNG	ZNF384--LPCAT3	1	2	ZNF384	2406	chr12:6797333:-	LPCAT3	18254	chr12:7092700:-	ONLY_REF_SPLICE	NO	91	38	0.03	0.07	0.0119	0.0238	ZNF384->Oncogene{Bushman},chr12:6775643-6798738:-,zinc_finger_protein_384,LPCAT3->chr12:7085348-7125814:-,lysophosphatidylcholine_acyltransferase_3	NCIH1184_LUNG	0.03	0.07	0.0357	TRUE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	BAI3--SMAP1	1	1	BAI3	23280	chr6:69949118:+	SMAP1	42395	chr6:71442081:+	ONLY_REF_SPLICE	YES	49	86	0.04	0.02	0.0119	0.0119	GTEx_v2:{count=1;pct=0.01%;dist=Pituitary=1},BAI3->chr6:69345259-70099403:+,SMAP1->Oncogene{Bushman},chr6:71377479-71571718:+,small_ArfGAP_1	NCIH1184_LUNG	0.02	0.04	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	CDKAL1--CASC15	1	1	CDKAL1	9690	chr6:20846409:+	CASC15	45909	chr6:22174227:+	ONLY_REF_SPLICE	YES	30	38	0.06	0.05	0.0119	0.0119	CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+,CASC15->cancer_susceptibility_candidate_15_(non-protein_coding),chr6:21665003-22214734:+	NCIH1184_LUNG	0.05	0.06	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	CTSB--HM13	1	1	CTSB	2448	chr8:11725510:-	HM13	32346	chr20:30136832:+	ONLY_REF_SPLICE	YES	28	184	0.07	0.01	0.0119	0.0119	CTSB->Oncogene{Bushman},cathepsin_B,chr8:11700033-11726957:-,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	NCIH1184_LUNG	0.01	0.07	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	DCLK2--LRBA	1	1	DCLK2	3510	chr4:151023964:+	LRBA	72472	chr4:151412187:-	ONLY_REF_SPLICE	YES	64	65	0.03	0.03	0.0119	0.0119	LOCAL_INVERSION:+:-:[6985],DCLK2->chr4:150999426-151178609:+,doublecortin_like_kinase_2,LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-	NCIH1184_LUNG	0.03	0.03	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	KANSL1--LRRC37A	1	1	KANSL1	8599	chr17:44230270:-	LRRC37A	41698	chr17:44399688:+	ONLY_REF_SPLICE	YES	157	73	0.01	0.03	0.0119	0.0119	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	NCIH1184_LUNG	0.01	0.03	0.0238	FALSE	2	2	0	6	0	FALSE	ACH-000523
NCIH1184_LUNG	MYO10--RP1-167G20.1	1	1	MYO10	45814	chr5:16670635:-	RP1-167G20.1	56020	chr5:16431087:-	ONLY_REF_SPLICE	YES	157	2	0.01	0.5	0.0119	0.0119	MYO10->chr5:16665395-16936372:-,myosin_X,RP1-167G20.1->chr5:16373470-16440190:-	NCIH1184_LUNG	0.01	0.5	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000523
NCIH1184_LUNG	PPP1R12C--CIRBP	1	1	PPP1R12C	8950	chr19:55610152:-	CIRBP	27068	chr19:1270927:+	ONLY_REF_SPLICE	NO	186	134	0.01	0.01	0.0119	0.0119	GTEx_FI:{Skin=[count:2=pct:0.6],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2]},GTEx_v2:{count=5;pct=0.06%;dist=Breast_-_Mammary_Tissue=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein	NCIH1184_LUNG	0.01	0.01	0.0238	FALSE	3	3	1	1	0	FALSE	ACH-000523
NCIH1184_LUNG	RP11-120D5.1--MID1	1	1	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	0	32	1	0.06	0.0119	0.0119	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1184_LUNG	0.06	1	0.0238	FALSE	2	31	0	60	0	FALSE	ACH-000523
NCIH1184_LUNG	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	32	0.5	0.06	0.0119	0.0119	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1184_LUNG	0.06	0.5	0.0238	FALSE	16	356	14	466	0	FALSE	ACH-000523
NCIH1184_LUNG	SF1--FUS	1	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	511	726	0	0	0.0119	0.0119	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH1184_LUNG	0	0	0.0238	FALSE	5	20	0	32	0	FALSE	ACH-000523
NCIH1184_LUNG	SS18L1--TAF4	1	1	SS18L1	1124	chr20:60718945:+	TAF4	21561	chr20:60589763:-	ONLY_REF_SPLICE	YES	43	32	0.04	0.06	0.0119	0.0119	GTEx_FI:{Skin=[count:2=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Pancreas=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[77956],SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-	NCIH1184_LUNG	0.04	0.06	0.0238	TRUE	2	5	0	8	0	FALSE	ACH-000523
NCIH2106_LUNG	CALM3--PAFAH1B3	230	25	CALM3	1364	chr19:47104694:+	PAFAH1B3	15517	chr19:42801517:-	ONLY_REF_SPLICE	YES	194	119	0.57	0.68	2.4244	0.2635	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,PAFAH1B3->chr19:42801185-42807698:-,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_3	NCIH2106_LUNG	0.57	0.68	2.6879	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	DDX1--AC104623.2	184	17	DDX1	4211	chr2:15736887:+	AC104623.2	29409	chr2:16710607:+	ONLY_REF_SPLICE	YES	9739	0	0.02	1	1.9395	0.1792	DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+,AC104623.2->chr2:16704444-16710655:+	NCIH2106_LUNG	0.02	1	2.1187	TRUE	0	0	0	1	0	FALSE	ACH-000904
NCIH2106_LUNG	PICALM--ME3	166	57	PICALM	2232	chr11:85779693:-	ME3	35836	chr11:86219909:-	ONLY_REF_SPLICE	YES	140	32	0.61	0.87	1.7497	0.6008	PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,ME3->Oncogene{Bushman},chr11:86152150-86383678:-,malic_enzyme_3	NCIH2106_LUNG	0.61	0.87	2.3505	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	ANKLE2--KIF1B	146	32	ANKLE2	12102	chr12:133324418:-	KIF1B	35951	chr1:10318551:+	ONLY_REF_SPLICE	YES	59	60	0.75	0.75	1.5389	0.3373	ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-,KIF1B->chr1:10270863-10441661:+,kinesin_family_member_1B	NCIH2106_LUNG	0.75	0.75	1.8762	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	TIMM23B--LINC00843	127	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3387	0.2108	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2106_LUNG	1	1	1.5495	TRUE	508	994	45	981	0	FALSE	ACH-000904
NCIH2106_LUNG	RP11-680G10.1--GSE1	107	18	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	180	1	0.41	1.1279	0.1897	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2106_LUNG	0.41	1	1.3176	TRUE	465	1949	224	605	0	FALSE	ACH-000904
NCIH2106_LUNG	RP11-680G10.1--GSE1	80	29	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	21	1	0.84	0.8433	0.3057	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2106_LUNG	0.84	1	1.149	TRUE	458	1351	185	561	0	FALSE	ACH-000904
NCIH2106_LUNG	TIMM23--RP11-464F9.1	76	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	82	6	0.49	0.93	0.8011	0.0211	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2106_LUNG	0.49	0.93	0.8222	TRUE	519	3926	326	965	0	FALSE	ACH-000904
NCIH2106_LUNG	PAFAH1B3--CALM3	65	26	PAFAH1B3	3915	chr19:42804122:-	CALM3	11502	chr19:47109084:+	ONLY_REF_SPLICE	YES	124	377	0.42	0.19	0.6851	0.2741	PAFAH1B3->chr19:42801185-42807698:-,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_3,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+	NCIH2106_LUNG	0.19	0.42	0.9592	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	PUM1--AC010880.1	48	1	PUM1	1376	chr1:31538463:-	AC010880.1	35460	chr2:16573521:+	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.506	0.0105	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,AC010880.1->chr2:16535524-16613970:+	NCIH2106_LUNG	0.98	1	0.5165	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	RP11-371M22.1--KCNN2	25	11	RP11-371M22.1	2166	chr5:113392868:+	KCNN2	5170	chr5:113696642:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2635	0.1159	GTEx_FI:{Stomach=[count:1=pct:1.1],Heart=[count:1=pct:0.4]},RP11-371M22.1->chr5:113391703-113392871:+,KCNN2->chr5:113696642-113832337:+,potassium_calcium-activated_channel_subfamily_N_member_2	NCIH2106_LUNG	1	1	0.3794	TRUE	2	0	0	3	0	FALSE	ACH-000904
NCIH2106_LUNG	RIMKLB--RP11-776A13.3	25	6	RIMKLB	10043	chr12:8906689:+	RP11-776A13.3	26038	chr12:30397338:-	ONLY_REF_SPLICE	YES	44	0	0.41	1	0.2635	0.0632	RIMKLB->chr12:8834196-8935691:+,ribosomal_modification_protein_rimK-like_family_member_B,RP11-776A13.3->chr12:30383712-30449640:-	NCIH2106_LUNG	0.41	1	0.3267	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	MT-ND6--MT-TE	22	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2319	0.137	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2106_LUNG	0.97	1	0.3689	FALSE	499	1288	110	792	0	FALSE	ACH-000904
NCIH2106_LUNG	MT-ND6--MT-TE	24	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.253	0.0316	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2106_LUNG	1	1	0.2846	FALSE	499	1288	110	792	0	FALSE	ACH-000904
NCIH2106_LUNG	MT-TA--MT-TC	22	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2319	0.0211	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2106_LUNG	1	1	0.253	FALSE	462	80	0	856	0	FALSE	ACH-000904
NCIH2106_LUNG	TMTC1--RP11-776A13.3	18	4	TMTC1	17004	chr12:29725038:-	RP11-776A13.3	45339	chr12:30397338:-	ONLY_REF_SPLICE	YES	18	0	0.55	1	0.1897	0.0422	TMTC1->chr12:29653773-29937692:-,transmembrane_and_tetratricopeptide_repeat_containing_1,RP11-776A13.3->chr12:30383712-30449640:-	NCIH2106_LUNG	0.55	1	0.2319	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	C3orf52--PHLDB2	15	10	C3orf52	3469	chr3:111821812:+	PHLDB2	36797	chr3:111664115:+	ONLY_REF_SPLICE	YES	4	15	0.86	0.62	0.1581	0.1054	C3orf52->chr3:111805182-111849851:+,chromosome_3_open_reading_frame_52,PHLDB2->chr3:111451344-111695364:+,pleckstrin_homology_like_domain_family_B_member_2	NCIH2106_LUNG	0.62	0.86	0.2635	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	FRY--KCNRG	16	4	FRY	12592	chr13:32711109:+	KCNRG	76048	chr13:50594350:+	ONLY_REF_SPLICE	YES	9	2	0.69	0.91	0.1687	0.0422	FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+,KCNRG->chr13:50589390-50595058:+,potassium_channel_regulator	NCIH2106_LUNG	0.69	0.91	0.2109	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	KCTD7--TYW1	13	1	KCTD7	9434	chr7:66205779:+	TYW1	29644	chr7:66463052:+	ONLY_REF_SPLICE	YES	1	33	0.93	0.3	0.137	0.0105	KCTD7->chr7:66093868-66276446:+,potassium_channel_tetramerization_domain_containing_7,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	NCIH2106_LUNG	0.3	0.93	0.1475	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	MT-CO3--MT-ATP6	5	33	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0527	0.3478	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2106_LUNG	0.95	1	0.4005	FALSE	189	492	56	216	0	FALSE	ACH-000904
NCIH2106_LUNG	MT-ND6--MT-TE	12	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1265	0.0316	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2106_LUNG	1	1	0.1581	FALSE	499	1288	110	792	0	FALSE	ACH-000904
NCIH2106_LUNG	FCHSD2--RAB6A	11	4	FCHSD2	3139	chr11:72851076:-	RAB6A	30597	chr11:73441868:-	ONLY_REF_SPLICE	YES	64	196	0.19	0.07	0.1159	0.0422	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,RAB6A->RAB6A,_member_RAS_oncogene_family,chr11:73386683-73472182:-	NCIH2106_LUNG	0.07	0.19	0.1581	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	MT-CO3--MT-ATP6	3	29	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.3057	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2106_LUNG	1	1	0.3373	FALSE	189	492	56	216	0	FALSE	ACH-000904
NCIH2106_LUNG	RP11-120D5.1--MID1	9	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	2	1	0.87	0.0949	0.0422	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2106_LUNG	0.87	1	0.1371	FALSE	16	356	14	466	0	FALSE	ACH-000904
NCIH2106_LUNG	RP11-97E7.1--FOXRED1	10	0	RP11-97E7.1	2311	chr4:172474370:-	FOXRED1	8526	chr11:126142474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1054	0	GTEx_FI:{Brain=[count:5=pct:0.8],Spleen=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Liver=[count:1=pct:0.8]},RP11-97E7.1->chr4:172474151-172485418:-,FOXRED1->FAD-dependent_oxidoreductase_domain_containing_1,chr11:126138950-126148026:+	NCIH2106_LUNG	1	1	0.1054	TRUE	5	3	0	5	0	FALSE	ACH-000904
NCIH2106_LUNG	MT-CO3--MT-ATP6	9	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.0949	0.0316	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2106_LUNG	0.86	1	0.1265	FALSE	189	492	56	216	0	FALSE	ACH-000904
NCIH2106_LUNG	MT-TA--MT-TC	9	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0949	0.0211	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2106_LUNG	1	1	0.116	FALSE	462	80	0	856	0	FALSE	ACH-000904
NCIH2106_LUNG	TMEM41B--PDHX	9	1	TMEM41B	6850	chr11:9308002:-	PDHX	25293	chr11:35013862:+	ONLY_REF_SPLICE	YES	42	83	0.19	0.11	0.0949	0.0105	TMEM41B->chr11:9302201-9336327:-,transmembrane_protein_41B,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	NCIH2106_LUNG	0.11	0.19	0.1054	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	FRY--KCNRG	8	4	FRY	12592	chr13:32711109:+	KCNRG	74950	chr13:50592959:+	ONLY_REF_SPLICE	YES	9	0	0.57	1	0.0843	0.0422	FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+,KCNRG->chr13:50589390-50595058:+,potassium_channel_regulator	NCIH2106_LUNG	0.57	1	0.1265	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	C3orf52--PHLDB2	6	6	C3orf52	3469	chr3:111821812:+	PHLDB2	37970	chr3:111667779:+	ONLY_REF_SPLICE	YES	4	11	0.75	0.52	0.0632	0.0632	C3orf52->chr3:111805182-111849851:+,chromosome_3_open_reading_frame_52,PHLDB2->chr3:111451344-111695364:+,pleckstrin_homology_like_domain_family_B_member_2	NCIH2106_LUNG	0.52	0.75	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	KIF1B--ANKLE2	7	2	KIF1B	60092	chr1:10440634:+	ANKLE2	70301	chr12:133332293:-	INCL_NON_REF_SPLICE	YES	72	31	0.11	0.23	0.0738	0.0211	KIF1B->chr1:10270863-10441661:+,kinesin_family_member_1B,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	NCIH2106_LUNG	0.11	0.23	0.0949	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	MT-CO3--MT-ATP6	7	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0738	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2106_LUNG	1	1	0.0738	FALSE	189	492	56	216	0	FALSE	ACH-000904
NCIH2106_LUNG	PAFAH1B3--CALM3	5	8	PAFAH1B3	3843	chr19:42804194:-	CALM3	11502	chr19:47109084:+	ONLY_REF_SPLICE	YES	115	377	0.1	0.03	0.0527	0.0843	PAFAH1B3->chr19:42801185-42807698:-,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_3,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+	NCIH2106_LUNG	0.03	0.1	0.137	TRUE	0	0	0	1	0	FALSE	ACH-000904
NCIH2106_LUNG	PAFAH1B3--CALM3	4	11	PAFAH1B3	3876	chr19:42804161:-	CALM3	11502	chr19:47109084:+	ONLY_REF_SPLICE	YES	119	377	0.11	0.04	0.0422	0.1159	PAFAH1B3->chr19:42801185-42807698:-,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_3,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+	NCIH2106_LUNG	0.04	0.11	0.1581	TRUE	0	0	0	1	0	FALSE	ACH-000904
NCIH2106_LUNG	CLTA--FAM201A	6	2	CLTA	4686	chr9:36204176:+	FAM201A	17815	chr9:38621829:+	ONLY_REF_SPLICE	YES	186	14	0.04	0.36	0.0632	0.0211	CLTA->chr9:36190853-36304778:+,clathrin_light_chain_A,FAM201A->chr9:38620471-38624987:+,family_with_sequence_similarity_201_member_A	NCIH2106_LUNG	0.04	0.36	0.0843	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	MT-TL1--MT-RNR2	6	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2106_LUNG	1	1	0.0632	FALSE	7	521	16	32	0	FALSE	ACH-000904
NCIH2106_LUNG	DDX1--AC104623.2	1	18	DDX1	4211	chr2:15736887:+	AC104623.2	28264	chr2:16708933:+	ONLY_REF_SPLICE	NO	9739	0	0	1	0.0105	0.1897	DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+,AC104623.2->chr2:16704444-16710655:+	NCIH2106_LUNG	0	1	0.2002	TRUE	0	0	0	1	0	FALSE	ACH-000904
NCIH2106_LUNG	CAD--DPYSL5	5	1	CAD	10058	chr2:27454448:+	DPYSL5	27215	chr2:27121364:+	ONLY_REF_SPLICE	YES	198	50	0.03	0.11	0.0527	0.0105	CAD->carbamoyl-phosphate_synthetase_2,_aspartate_transcarbamylase,_and_dihydroorotase,chr2:27440258-27466811:+,DPYSL5->chr2:27070615-27173219:+,dihydropyrimidinase_like_5	NCIH2106_LUNG	0.03	0.11	0.0632	TRUE	0	0	0	1	0	FALSE	ACH-000904
NCIH2106_LUNG	MT-ND6--MT-TE	3	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.0949	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2106_LUNG	1	1	0.1265	FALSE	499	1288	110	792	0	FALSE	ACH-000904
NCIH2106_LUNG	SPSB4--ACPL2	5	1	SPSB4	3438	chr3:140785640:+	ACPL2	24446	chr3:140997184:+	ONLY_REF_SPLICE	YES	85	13	0.07	0.32	0.0527	0.0105	NEIGHBORS[80115],SPSB4->chr3:140770244-140867453:+,splA/ryanodine_receptor_domain_and_SOCS_box_containing_4,ACPL2->chr3:140947568-141013748:+	NCIH2106_LUNG	0.07	0.32	0.0632	FALSE	0	10	0	3	0	FALSE	ACH-000904
NCIH2106_LUNG	MT-CO3--MT-ATP6	5	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2106_LUNG	1	1	0.0527	FALSE	189	492	56	216	0	FALSE	ACH-000904
NCIH2106_LUNG	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2106_LUNG	1	1	0.0527	FALSE	462	80	0	856	0	FALSE	ACH-000904
NCIH2106_LUNG	SPSB4--ACPL2	4	3	SPSB4	3438	chr3:140785640:+	ACPL2	18637	chr3:140978965:+	ONLY_REF_SPLICE	YES	85	1	0.08	0.88	0.0422	0.0316	NEIGHBORS[80115],SPSB4->chr3:140770244-140867453:+,splA/ryanodine_receptor_domain_and_SOCS_box_containing_4,ACPL2->chr3:140947568-141013748:+	NCIH2106_LUNG	0.08	0.88	0.0738	FALSE	0	11	0	4	0	FALSE	ACH-000904
NCIH2106_LUNG	KIF1B--ANKLE2	4	2	KIF1B	5430	chr1:10316381:+	ANKLE2	76222	chr12:133319862:-	ONLY_REF_SPLICE	YES	61	55	0.09	0.1	0.0422	0.0211	KIF1B->chr1:10270863-10441661:+,kinesin_family_member_1B,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	NCIH2106_LUNG	0.09	0.1	0.0633	TRUE	0	0	0	1	0	FALSE	ACH-000904
NCIH2106_LUNG	MT-TA--MT-TC	4	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0.0211	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2106_LUNG	1	1	0.0633	FALSE	462	80	0	856	0	FALSE	ACH-000904
NCIH2106_LUNG	FRY--KCNRG	3	5	FRY	12592	chr13:32711109:+	KCNRG	73852	chr13:50590110:+	INCL_NON_REF_SPLICE	YES	9	1	0.47	0.89	0.0316	0.0527	FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+,KCNRG->chr13:50589390-50595058:+,potassium_channel_regulator	NCIH2106_LUNG	0.47	0.89	0.0843	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	GDAP1--RP11-758M4.1	4	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	46	0	0.1	1	0.0422	0.0105	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH2106_LUNG	0.1	1	0.0527	TRUE	7	28	0	43	0	FALSE	ACH-000904
NCIH2106_LUNG	MAF--RP11-679B19.2	4	0	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	NCIH2106_LUNG	1	1	0.0422	TRUE	48	25	3	38	0	FALSE	ACH-000904
NCIH2106_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2106_LUNG	1	1	0.0422	FALSE	499	1288	110	792	0	FALSE	ACH-000904
NCIH2106_LUNG	PAFAH1B3--CALM3	3	4	PAFAH1B3	3714	chr19:42804323:-	CALM3	11502	chr19:47109084:+	ONLY_REF_SPLICE	YES	147	377	0.05	0.02	0.0316	0.0422	PAFAH1B3->chr19:42801185-42807698:-,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_3,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+	NCIH2106_LUNG	0.02	0.05	0.0738	TRUE	0	0	0	1	0	FALSE	ACH-000904
NCIH2106_LUNG	RP11-634B7.4--TRIM58	4	0	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0422	0	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	NCIH2106_LUNG	1	1	0.0422	TRUE	158	633	76	73	0	FALSE	ACH-000904
NCIH2106_LUNG	FCHSD2--RAB6A	3	2	FCHSD2	1405	chr11:72852902:-	RAB6A	30597	chr11:73441868:-	ONLY_REF_SPLICE	YES	51	196	0.09	0.02	0.0316	0.0211	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,RAB6A->RAB6A,_member_RAS_oncogene_family,chr11:73386683-73472182:-	NCIH2106_LUNG	0.02	0.09	0.0527	TRUE	0	0	0	1	0	FALSE	ACH-000904
NCIH2106_LUNG	BZW2--HDAC9	3	1	BZW2	13598	chr7:16734629:+	HDAC9	66129	chr7:18975432:+	ONLY_REF_SPLICE	YES	88	2	0.04	0.67	0.0316	0.0105	BZW2->basic_leucine_zipper_and_W2_domains_2,chr7:16685756-16746148:+,HDAC9->chr7:18126572-19042039:+,histone_deacetylase_9	NCIH2106_LUNG	0.04	0.67	0.0421	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	CD44--PAMR1	2	5	CD44	1501	chr11:35160917:+	PAMR1	35703	chr11:35515820:-	ONLY_REF_SPLICE	YES	3045	2	0	0.78	0.0211	0.0527	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PAMR1->chr11:35453370-35551848:-,peptidase_domain_containing_associated_with_muscle_regeneration_1	NCIH2106_LUNG	0	0.78	0.0738	FALSE	0	0	0	2	0	FALSE	ACH-000904
NCIH2106_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2106_LUNG	1	1	0.0316	FALSE	499	1288	110	792	0	FALSE	ACH-000904
NCIH2106_LUNG	PTK2--RP11-809O17.1	2	2	PTK2	9058	chr8:141935760:-	RP11-809O17.1	67687	chr8:142136570:-	ONLY_REF_SPLICE	YES	173	2	0.02	0.67	0.0211	0.0211	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,RP11-809O17.1->chr8:142136143-142140060:-	NCIH2106_LUNG	0.02	0.67	0.0422	TRUE	0	0	0	1	0	FALSE	ACH-000904
NCIH2106_LUNG	VTI1A--RP11-57H14.3	2	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	24	0	0.14	1	0.0211	0.0211	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH2106_LUNG	0.14	1	0.0422	FALSE	272	151	14	158	0	FALSE	ACH-000904
NCIH2106_LUNG	CD44--PAMR1	2	1	CD44	4202	chr11:35201954:+	PAMR1	38009	chr11:35496292:-	ONLY_REF_SPLICE	YES	2839	3	0	0.5	0.0211	0.0105	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PAMR1->chr11:35453370-35551848:-,peptidase_domain_containing_associated_with_muscle_regeneration_1	NCIH2106_LUNG	0	0.5	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000904
NCIH2106_LUNG	CDKAL1--CSGALNACT1	2	0	CDKAL1	8586	chr6:20781496:+	CSGALNACT1	34926	chr8:19363641:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+,CSGALNACT1->chondroitin_sulfate_N-acetylgalactosaminyltransferase_1,chr8:19261672-19615540:-	NCIH2106_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	CNBP--POLR2B	2	0	CNBP	1147	chr3:128902619:-	POLR2B	15428	chr4:57865783:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CNBP->CCHC-type_zinc_finger_nucleic_acid_binding_protein,chr3:128888327-128902765:-,POLR2B->chr4:57843888-57897334:+,polymerase_(RNA)_II_subunit_B	NCIH2106_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	EIF1AY--DAD1	2	0	EIF1AY	1163	chrY:22737773:+	DAD1	14398	chr14:23044133:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	EIF1AY->chrY:22737611-22755040:+,eukaryotic_translation_initiation_factor_1A,_Y-linked,DAD1->chr14:23033805-23058175:-,defender_against_cell_death_1	NCIH2106_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	NDUFV3--ALG13	2	0	NDUFV3	4688	chr21:44313491:+	ALG13	34533	chrX:110968162:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,ALG13->ALG13,_UDP-N-acetylglucosaminyltransferase_subunit,chrX:110909043-111003877:+	NCIH2106_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2106_LUNG	1	1	0.0211	FALSE	515	4851	409	746	0	FALSE	ACH-000904
NCIH2106_LUNG	TNIK--NCK1	2	0	TNIK	2468	chr3:171087409:-	NCK1	48531	chr3:136646826:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	TNIK->TRAF2_and_NCK_interacting_kinase,chr3:170779128-171178197:-,NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+	NCIH2106_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000904
NCIH2106_LUNG	RP11-120D5.1--MID1	1	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	3	2	0.57	0.67	0.0105	0.0316	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2106_LUNG	0.57	0.67	0.0421	FALSE	0	48	1	163	0	FALSE	ACH-000904
NCIH2106_LUNG	PAFAH1B3--CALM3	1	2	PAFAH1B3	2597	chr19:42806102:-	CALM3	11502	chr19:47109084:+	ONLY_REF_SPLICE	YES	200	377	0.01	0.01	0.0105	0.0211	PAFAH1B3->chr19:42801185-42807698:-,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_3,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+	NCIH2106_LUNG	0.01	0.01	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000904
NCIH2106_LUNG	RER1--SKI	1	2	RER1	6178	chr1:2328659:+	SKI	20160	chr1:2234417:+	ONLY_REF_SPLICE	YES	145	55	0.02	0.05	0.0105	0.0211	LOCAL_REARRANGEMENT:+:[81709],RER1->chr1:2323267-2336883:+,retention_in_endoplasmic_reticulum_sorting_receptor_1,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	NCIH2106_LUNG	0.02	0.05	0.0316	TRUE	0	0	0	1	0	FALSE	ACH-000904
NCIH2106_LUNG	CD44--PAMR1	1	1	CD44	1501	chr11:35160917:+	PAMR1	43570	chr11:35463241:-	ONLY_REF_SPLICE	YES	3045	4	0	0.33	0.0105	0.0105	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PAMR1->chr11:35453370-35551848:-,peptidase_domain_containing_associated_with_muscle_regeneration_1	NCIH2106_LUNG	0	0.33	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000904
NCIH2106_LUNG	CD44--PAMR1	1	1	CD44	1501	chr11:35160917:+	PAMR1	38009	chr11:35496292:-	ONLY_REF_SPLICE	YES	3045	3	0	0.4	0.0105	0.0105	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PAMR1->chr11:35453370-35551848:-,peptidase_domain_containing_associated_with_muscle_regeneration_1	NCIH2106_LUNG	0	0.4	0.021	FALSE	0	0	0	2	0	FALSE	ACH-000904
NCIH2106_LUNG	CD44--PAMR1	1	1	CD44	13054	chr11:35226187:+	PAMR1	44783	chr11:35461241:-	ONLY_REF_SPLICE	YES	3379	4	0	0.33	0.0105	0.0105	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PAMR1->chr11:35453370-35551848:-,peptidase_domain_containing_associated_with_muscle_regeneration_1	NCIH2106_LUNG	0	0.33	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000904
NCIH2106_LUNG	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0105	0.0105	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2106_LUNG	0.5	1	0.021	FALSE	416	2512	207	587	0	FALSE	ACH-000904
NCIH2106_LUNG	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0105	0.0105	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2106_LUNG	1	1	0.021	TRUE	62	24	1	171	0	FALSE	ACH-000904
NCIH2106_LUNG	TMX3--SEPT2	1	1	TMX3	8002	chr18:66367642:-	SEPT2	42376	chr2:242287549:+	ONLY_REF_SPLICE	YES	27	565	0.07	0	0.0105	0.0105	TMX3->chr18:66340925-66382535:-,thioredoxin_related_transmembrane_protein_3,SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2	NCIH2106_LUNG	0	0.07	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000904
LU65_LUNG	PVT1--RP11-89K10.1	755	303	PVT1	1202	chr8:128806980:+	RP11-89K10.1	37725	chr8:127725531:+	ONLY_REF_SPLICE	YES	81	4	0.93	1	11.1146	4.4606	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.93	1	15.5752	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	ZDHHC16--PPP1R2	596	251	ZDHHC16	1184	chr10:99206110:+	PPP1R2	20614	chr3:195245982:-	ONLY_REF_SPLICE	YES	61	155	0.93	0.85	8.7739	3.6951	ZDHHC16->chr10:99205927-99217127:+,zinc_finger_DHHC-type_containing_16,PPP1R2->chr3:195241221-195270209:-,protein_phosphatase_1_regulatory_inhibitor_subunit_2	LU65_LUNG	0.85	0.93	12.469	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	134	345	PVT1	1202	chr8:128806980:+	RP11-89K10.1	35437	chr8:127719428:+	ONLY_REF_SPLICE	YES	81	1	0.86	1	1.9727	5.0789	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.86	1	7.0516	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	125	345	PVT1	1202	chr8:128806980:+	RP11-89K10.1	35440	chr8:127719431:+	INCL_NON_REF_SPLICE	YES	81	1	0.85	1	1.8402	5.0789	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.85	1	6.9191	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	35	311	PVT1	2457	chr8:128808254:+	RP11-89K10.1	37725	chr8:127725531:+	ONLY_REF_SPLICE	YES	60	4	0.85	0.99	0.5152	4.5783	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.85	0.99	5.0935	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	MYNN--NAALADL2	99	45	MYNN	2731	chr3:169492349:+	NAALADL2	24973	chr3:174268359:+	ONLY_REF_SPLICE	YES	51	0	0.74	1	1.4574	0.6625	MYNN->chr3:169490619-169507504:+,myoneurin,NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+	LU65_LUNG	0.74	1	2.1199	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	20	355	PVT1	2457	chr8:128808254:+	RP11-89K10.1	35440	chr8:127719431:+	INCL_NON_REF_SPLICE	YES	60	1	0.86	1	0.2944	5.2261	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.86	1	5.5205	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	25	314	PVT1	2520	chr8:128808317:+	RP11-89K10.1	37725	chr8:127725531:+	ONLY_REF_SPLICE	YES	58	4	0.85	0.99	0.368	4.6225	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.85	0.99	4.9905	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	9	358	PVT1	2520	chr8:128808317:+	RP11-89K10.1	35440	chr8:127719431:+	INCL_NON_REF_SPLICE	YES	58	1	0.86	1	0.1325	5.2702	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.86	1	5.4027	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	TIMM23B--LINC00843	87	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2808	0.4122	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LU65_LUNG	1	1	1.693	TRUE	508	994	45	981	0	FALSE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	5	355	PVT1	2457	chr8:128808254:+	RP11-89K10.1	35437	chr8:127719428:+	ONLY_REF_SPLICE	YES	60	1	0.86	1	0.0736	5.2261	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.86	1	5.2997	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	3	358	PVT1	2520	chr8:128808317:+	RP11-89K10.1	35437	chr8:127719428:+	ONLY_REF_SPLICE	YES	58	1	0.86	1	0.0442	5.2702	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.86	1	5.3144	TRUE	0	1	0	1	1	TRUE	ACH-000438
LU65_LUNG	PVT1--RP11-89K10.1	1	308	PVT1	1202	chr8:128806980:+	RP11-89K10.1	36495	chr8:127721163:+	ONLY_REF_SPLICE	YES	81	1	0.79	1	0.0147	4.5342	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89K10.1->chr8:127570120-127725660:+	LU65_LUNG	0.79	1	4.5489	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	LAMA5--ITCH	67	14	LAMA5	30525	chr20:60893510:-	ITCH	52976	chr20:33026279:+	ONLY_REF_SPLICE	YES	45	28	0.64	0.74	0.9863	0.2061	LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5,ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase	LU65_LUNG	0.64	0.74	1.1924	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	YDJC--MAPK1	59	27	YDJC	1757	chr22:21983597:-	MAPK1	13596	chr22:22123609:-	ONLY_REF_SPLICE	YES	134	128	0.39	0.4	0.8686	0.3975	YDJC->YdjC_homolog_(bacterial),chr22:21982378-21984353:-,MAPK1->Oncogene{Bushman},chr22:22108789-22221970:-,mitogen-activated_protein_kinase_1	LU65_LUNG	0.39	0.4	1.2661	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	TIMM23--RP11-464F9.1	55	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.8097	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LU65_LUNG	1	1	0.8097	TRUE	519	3926	326	965	0	FALSE	ACH-000438
LU65_LUNG	PPP2R1A--FPR2	32	10	PPP2R1A	1136	chr19:52693427:+	FPR2	26063	chr19:52271898:+	ONLY_REF_SPLICE	YES	317	0	0.12	1	0.4711	0.1472	PPP2R1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:52693292-52730687:+,protein_phosphatase_2_regulatory_subunit_A,_alpha,FPR2->chr19:52255279-52273779:+,formyl_peptide_receptor_2	LU65_LUNG	0.12	1	0.6183	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	MYNN--NAALADL2	15	27	MYNN	2601	chr3:169492219:+	NAALADL2	24973	chr3:174268359:+	INCL_NON_REF_SPLICE	YES	91	0	0.32	1	0.2208	0.3975	MYNN->chr3:169490619-169507504:+,myoneurin,NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+	LU65_LUNG	0.32	1	0.6183	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	MT-TA--MT-TC	21	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3091	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LU65_LUNG	1	1	0.3091	FALSE	462	80	0	856	0	FALSE	ACH-000438
LU65_LUNG	FBXL20--TNS4	18	7	FBXL20	2163	chr17:37557614:-	TNS4	25369	chr17:38645221:-	ONLY_REF_SPLICE	YES	3	281	0.89	0.08	0.265	0.103	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,TNS4->chr17:38632080-38657849:-,tensin_4	LU65_LUNG	0.08	0.89	0.368	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	FBXL20--TNS4	19	1	FBXL20	1351	chr17:37558426:-	TNS4	25369	chr17:38645221:-	ONLY_REF_SPLICE	YES	1	281	0.95	0.07	0.2797	0.0147	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,TNS4->chr17:38632080-38657849:-,tensin_4	LU65_LUNG	0.07	0.95	0.2944	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2503	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LU65_LUNG	1	1	0.2503	TRUE	0	0	0	518	0	FALSE	ACH-000438
LU65_LUNG	YDJC--MAPK1	8	29	YDJC	2055	chr22:21983299:-	MAPK1	13596	chr22:22123609:-	ONLY_REF_SPLICE	YES	73	128	0.34	0.22	0.1178	0.4269	YDJC->YdjC_homolog_(bacterial),chr22:21982378-21984353:-,MAPK1->Oncogene{Bushman},chr22:22108789-22221970:-,mitogen-activated_protein_kinase_1	LU65_LUNG	0.22	0.34	0.5447	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	PCGF3--IDUA	13	4	PCGF3	14737	chr4:760563:+	IDUA	30630	chr4:997773:+	INCL_NON_REF_SPLICE	YES	22	1	0.44	0.94	0.1914	0.0589	PCGF3->chr4:699537-764428:+,polycomb_group_ring_finger_3,IDUA->chr4:980785-998316:+,iduronidase,_alpha-L-	LU65_LUNG	0.44	0.94	0.2503	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	MNAT1--RP11-486O13.4	13	2	MNAT1	1210	chr14:61201669:+	RP11-486O13.4	17049	chr14:70920226:-	ONLY_REF_SPLICE	YES	38	0	0.28	1	0.1914	0.0294	MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+,RP11-486O13.4->chr14:70892529-71014181:-	LU65_LUNG	0.28	1	0.2208	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	MT-CO3--MT-ATP6	11	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.1619	0.0147	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LU65_LUNG	0.86	1	0.1766	FALSE	189	492	56	216	0	FALSE	ACH-000438
LU65_LUNG	EDC3--UBL7	8	6	EDC3	8997	chr15:74963796:-	UBL7	21146	chr15:74751237:-	ONLY_REF_SPLICE	YES	31	29	0.31	0.33	0.1178	0.0883	EDC3->chr15:74922899-74988633:-,enhancer_of_mRNA_decapping_3,UBL7->Oncogene{Bushman},chr15:74738318-74753523:-,ubiquitin_like_7	LU65_LUNG	0.31	0.33	0.2061	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	MT-CO3--MT-ATP6	3	23	MT-CO3	1207	chrM:9413:+	MT-ATP6	4736	chrM:8478:+	INCL_NON_REF_SPLICE	NO	5	0	0.84	1	0.0442	0.3386	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LU65_LUNG	0.84	1	0.3828	FALSE	189	492	56	216	0	FALSE	ACH-000438
LU65_LUNG	PTK2--AGO2	8	2	PTK2	17073	chr8:141856359:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	29	1	0.26	0.91	0.1178	0.0294	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	LU65_LUNG	0.26	0.91	0.1472	FALSE	0	0	0	1	0	FALSE	ACH-000438
LU65_LUNG	HNRNPF--RP11-517P14.2	8	1	HNRNPF	2450	chr10:43903165:-	RP11-517P14.2	12653	chr10:43917118:+	ONLY_REF_SPLICE	YES	20	3	0.31	0.75	0.1178	0.0147	LOCAL_INVERSION:-:+:[11572],HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F,RP11-517P14.2->chr10:43916186-43917548:+	LU65_LUNG	0.31	0.75	0.1325	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	MT-ND6--MT-TE	8	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1178	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LU65_LUNG	1	1	0.1178	FALSE	499	1288	110	792	0	FALSE	ACH-000438
LU65_LUNG	HNRNPF--RP11-517P14.2	7	0	HNRNPF	1036	chr10:43904579:-	RP11-517P14.2	12653	chr10:43917118:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.103	0	LOCAL_INVERSION:-:+:[11572],HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F,RP11-517P14.2->chr10:43916186-43917548:+	LU65_LUNG	1	1	0.103	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	PDE6B--PPP2R2D	7	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.103	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	LU65_LUNG	1	1	0.103	TRUE	7	65	3	22	0	FALSE	ACH-000438
LU65_LUNG	TFDP2--PVT1	7	0	TFDP2	18186	chr3:141688915:-	PVT1	40024	chr8:128902835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.103	0	TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	LU65_LUNG	1	1	0.103	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	RP11-96H19.1--RP11-446N19.1	6	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0883	0.0294	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LU65_LUNG	0.8	1	0.1177	FALSE	515	4851	409	746	0	FALSE	ACH-000438
LU65_LUNG	MT-CO3--MT-ATP6	5	3	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0736	0.0442	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LU65_LUNG	1	1	0.1178	FALSE	189	492	56	216	0	FALSE	ACH-000438
LU65_LUNG	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0736	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LU65_LUNG	1	1	0.0736	FALSE	63	17	1	58	0	FALSE	ACH-000438
LU65_LUNG	MT-CO3--MT-ATP6	3	8	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0.1178	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LU65_LUNG	1	1	0.162	FALSE	189	492	56	216	0	FALSE	ACH-000438
LU65_LUNG	EIF1--RPS28	4	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0589	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	LU65_LUNG	1	1	0.0589	TRUE	0	0	0	81	0	FALSE	ACH-000438
LU65_LUNG	TIMM23B--LINC00843	4	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0589	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LU65_LUNG	1	1	0.0589	TRUE	62	24	1	171	0	FALSE	ACH-000438
LU65_LUNG	PKM--PPIA	3	3	PKM	16753	chr15:72494877:-	PPIA	23268	chr7:44836286:+	INCL_NON_REF_SPLICE	YES	4680	0	0	1	0.0442	0.0442	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	LU65_LUNG	0	1	0.0884	FALSE	0	0	0	18	0	FALSE	ACH-000438
LU65_LUNG	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.75	1	0.0442	0.0442	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LU65_LUNG	0.75	1	0.0884	FALSE	407	2205	196	549	0	FALSE	ACH-000438
LU65_LUNG	AEBP2--RP11-405A12.2	3	0	AEBP2	15624	chr12:19873625:+	RP11-405A12.2	19888	chr12:20076132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0	NEIGHBORS[54650],AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,RP11-405A12.2->chr12:19928385-20162871:+	LU65_LUNG	1	1	0.0442	FALSE	0	0	0	8	0	FALSE	ACH-000438
LU65_LUNG	GAR1--CCDC109B	3	0	GAR1	3994	chr4:110740216:+	CCDC109B	13494	chr4:110580167:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0442	0	GAR1->GAR1_ribonucleoprotein,chr4:110736666-110745893:+,CCDC109B->chr4:110481361-110609874:+,coiled-coil_domain_containing_109B	LU65_LUNG	1	1	0.0442	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	YDJC--MAPK1	1	7	YDJC	1463	chr22:21983891:-	MAPK1	13596	chr22:22123609:-	ONLY_REF_SPLICE	NO	132	128	0.06	0.06	0.0147	0.103	YDJC->YdjC_homolog_(bacterial),chr22:21982378-21984353:-,MAPK1->Oncogene{Bushman},chr22:22108789-22221970:-,mitogen-activated_protein_kinase_1	LU65_LUNG	0.06	0.06	0.1177	TRUE	0	0	0	1	0	FALSE	ACH-000438
LU65_LUNG	GNGT1--AC002076.10	2	1	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0294	0.0147	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	LU65_LUNG	0.6	1	0.0441	FALSE	0	10	0	30	0	FALSE	ACH-000438
LU65_LUNG	GNGT1--AC002076.10	2	1	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0294	0.0147	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	LU65_LUNG	0.75	1	0.0441	FALSE	0	28	0	37	0	FALSE	ACH-000438
LU65_LUNG	ATP5J2--SAE1	2	0	ATP5J2	1203	chr7:99063752:-	SAE1	21953	chr19:47700490:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	ATP5J2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_F2,chr7:99046098-99063954:-,SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+	LU65_LUNG	1	1	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	FARS2--RP3-380B8.4	2	0	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	LU65_LUNG	1	1	0.0294	FALSE	27	82	4	18	0	FALSE	ACH-000438
LU65_LUNG	FDPS--STMN1	2	0	FDPS	3847	chr1:155282186:+	STMN1	16467	chr1:26228173:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,STMN1->chr1:26210672-26233482:-,stathmin_1	LU65_LUNG	1	1	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	HNRNPF--RP11-517P14.2	2	0	HNRNPF	1077	chr10:43904538:-	RP11-517P14.2	12653	chr10:43917118:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	LOCAL_INVERSION:-:+:[11572],HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F,RP11-517P14.2->chr10:43916186-43917548:+	LU65_LUNG	1	1	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LU65_LUNG	1	1	0.0294	FALSE	292	1546	117	613	0	FALSE	ACH-000438
LU65_LUNG	PTK2--AGO2	2	0	PTK2	9058	chr8:141935760:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	LU65_LUNG	1	1	0.0294	FALSE	0	0	0	3	0	FALSE	ACH-000438
LU65_LUNG	TPD52--RP11-26J3.1	2	0	TPD52	6214	chr8:81083660:-	RP11-26J3.1	33585	chr8:80732750:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	NEIGHBORS[86577],TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,RP11-26J3.1->chr8:80681607-80783994:-	LU65_LUNG	1	1	0.0294	FALSE	0	1	0	1	0	FALSE	ACH-000438
LU65_LUNG	PTK2--AGO2	1	3	PTK2	17073	chr8:141856359:-	AGO2	66443	chr8:141636942:-	ONLY_REF_SPLICE	YES	29	0	0.12	1	0.0147	0.0442	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	LU65_LUNG	0.12	1	0.0589	FALSE	0	0	0	1	0	FALSE	ACH-000438
LU65_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0.0442	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LU65_LUNG	1	1	0.0589	FALSE	467	2173	244	435	0	FALSE	ACH-000438
LU65_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0147	0.0442	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LU65_LUNG	0.67	1	0.0589	FALSE	275	511	55	178	0	FALSE	ACH-000438
LU65_LUNG	AGO2--SLC45A4	1	1	AGO2	5900	chr8:141582911:-	SLC45A4	28122	chr8:142264728:-	ONLY_REF_SPLICE	YES	35	0	0.05	1	0.0147	0.0147	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4	LU65_LUNG	0.05	1	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000438
LU65_LUNG	AP000487.5--PSMG3	1	1	AP000487.5	1391	chr11:70244204:-	PSMG3	11599	chr7:1608996:-	ONLY_REF_SPLICE	YES	1	84	0.67	0.02	0.0147	0.0147	AP000487.5->chr11:70218352-70244594:-,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	LU65_LUNG	0.02	0.67	0.0294	TRUE	0	0	0	1	0	FALSE	ACH-000438
LU65_LUNG	ASAP1--FAM49B	1	1	ASAP1	1201	chr8:131455706:-	FAM49B	49409	chr8:130983241:-	ONLY_REF_SPLICE	YES	15	19	0.12	0.1	0.0147	0.0147	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	LU65_LUNG	0.1	0.12	0.0294	FALSE	0	0	0	1	0	FALSE	ACH-000438
LU65_LUNG	ASAP1--FAM49B	1	1	ASAP1	16493	chr8:131199482:-	FAM49B	60144	chr8:130891717:-	ONLY_REF_SPLICE	NO	109	348	0.02	0.01	0.0147	0.0147	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	LU65_LUNG	0.01	0.02	0.0294	FALSE	0	0	0	1	0	FALSE	ACH-000438
LU65_LUNG	CD46--CD55	1	1	CD46	10040	chr1:207943707:+	CD55	25867	chr1:207504453:+	ONLY_REF_SPLICE	YES	832	2311	0	0	0.0147	0.0147	HGNC_GENEFAM,PROTCLUST,CD46->CD46_molecule,Oncogene{Bushman},chr1:207925402-207968858:+,CD55->CD55_molecule_(Cromer_blood_group),Oncogene{Bushman},chr1:207494853-207534311:+	LU65_LUNG	0	0	0.0294	FALSE	0	0	0	1	0	FALSE	ACH-000438
LU65_LUNG	P4HB--MT-ND4L	1	1	P4HB	7728	chr17:79803747:-	MT-ND4L	13390	chrM:10470:+	ONLY_REF_SPLICE	NO	1389	0	0	1	0.0147	0.0147	P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LU65_LUNG	0	1	0.0294	FALSE	1	1	0	2	0	FALSE	ACH-000438
LU65_LUNG	PFDN2--UBXN4	1	1	PFDN2	1160	chr1:161087742:-	UBXN4	14648	chr2:136527339:+	ONLY_REF_SPLICE	NO	10	114	0.17	0.02	0.0147	0.0147	PFDN2->chr1:161070346-161087901:-,prefoldin_subunit_2,UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+	LU65_LUNG	0.02	0.17	0.0294	TRUE	0	0	0	1	0	FALSE	ACH-000438
LU65_LUNG	RAB12--PTPRM	1	1	RAB12	2570	chr18:8624996:+	PTPRM	45896	chr18:8370888:+	ONLY_REF_SPLICE	YES	37	48	0.05	0.04	0.0147	0.0147	RAB12->RAB12,_member_RAS_oncogene_family,chr18:8609443-8639379:+,PTPRM->chr18:7566780-8406859:+,protein_tyrosine_phosphatase,_receptor_type_M	LU65_LUNG	0.04	0.05	0.0294	TRUE	0	0	0	1	0	FALSE	ACH-000438
LU65_LUNG	UBAP1--UBE2D2	1	1	UBAP1	1236	chr9:34179238:+	UBE2D2	18243	chr5:138979957:+	ONLY_REF_SPLICE	YES	166	37	0.01	0.05	0.0147	0.0147	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	LU65_LUNG	0.01	0.05	0.0294	FALSE	1	0	0	3	0	FALSE	ACH-000438
KPMRTRY_SOFT_TISSUE	CBX5--LLPH	191	130	CBX5	4174	chr12:54651298:-	LLPH	23040	chr12:66522893:-	ONLY_REF_SPLICE	YES	149	21	0.68	0.94	3.2912	2.2401	CBX5->chr12:54624724-54673886:-,chromobox_5,LLPH->LLP_homolog,_long-term_synaptic_facilitation,chr12:66516842-66524548:-	KPMRTRY_SOFT_TISSUE	0.68	0.94	5.5313	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	ZEB1--SVILP1	147	126	ZEB1	13385	chr10:31750166:+	SVILP1	45103	chr10:31005856:+	ONLY_REF_SPLICE	YES	364	22	0.43	0.93	2.533	2.1711	ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,SVILP1->chr10:30960495-31006195:+,supervillin_pseudogene_1	KPMRTRY_SOFT_TISSUE	0.43	0.93	4.7041	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	AP003900.6--AC008132.1	112	15	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.9299	0.2585	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KPMRTRY_SOFT_TISSUE	1	1	2.1884	TRUE	0	0	0	25	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	TIMM23B--LINC00843	54	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9305	0.4997	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KPMRTRY_SOFT_TISSUE	1	1	1.4302	TRUE	508	994	45	981	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	NR2F1-AS1--FAM172A	34	63	NR2F1-AS1	3151	chr5:92916173:-	FAM172A	38318	chr5:92956835:-	ONLY_REF_SPLICE	YES	68	61	0.59	0.61	0.5859	1.0856	LOCAL_REARRANGEMENT:-:[32421],NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	KPMRTRY_SOFT_TISSUE	0.59	0.61	1.6715	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	RP1-34H18.1--NAV3	34	17	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	89	1	0.36	0.5859	0.2929	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	KPMRTRY_SOFT_TISSUE	0.36	1	0.8788	TRUE	254	575	65	124	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	TIMM23--RP11-464F9.1	33	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	179	3	0.17	0.92	0.5686	0.0517	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KPMRTRY_SOFT_TISSUE	0.17	0.92	0.6203	TRUE	519	3926	326	965	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	RP11-680G10.1--GSE1	29	15	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4997	0.2585	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KPMRTRY_SOFT_TISSUE	1	1	0.7582	TRUE	458	1351	185	561	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	RP11-680G10.1--GSE1	28	13	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	23	1	0.64	0.4825	0.224	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KPMRTRY_SOFT_TISSUE	0.64	1	0.7065	TRUE	465	1949	224	605	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	MT-ND6--MT-TE	28	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4825	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPMRTRY_SOFT_TISSUE	1	1	0.4825	FALSE	499	1288	110	792	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	MT-TA--MT-TC	22	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3791	0.0345	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KPMRTRY_SOFT_TISSUE	1	1	0.4136	FALSE	462	80	0	856	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	NR2F1-AS1--FAM172A	18	13	NR2F1-AS1	2476	chr5:92916848:-	FAM172A	38318	chr5:92956835:-	ONLY_REF_SPLICE	YES	42	61	0.42	0.34	0.3102	0.224	LOCAL_REARRANGEMENT:-:[32421],NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	KPMRTRY_SOFT_TISSUE	0.34	0.42	0.5342	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	FAM222B--NUFIP2	6	49	FAM222B	5825	chr17:27117396:-	NUFIP2	21578	chr17:27594548:-	ONLY_REF_SPLICE	YES	28	106	0.66	0.34	0.1034	0.8443	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2	KPMRTRY_SOFT_TISSUE	0.34	0.66	0.9477	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	FAM222B--NUFIP2	13	17	FAM222B	2441	chr17:27169700:-	NUFIP2	21578	chr17:27594548:-	ONLY_REF_SPLICE	YES	3	106	0.91	0.22	0.224	0.2929	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2	KPMRTRY_SOFT_TISSUE	0.22	0.91	0.5169	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2929	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KPMRTRY_SOFT_TISSUE	1	1	0.2929	TRUE	0	0	0	518	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	FAM222B--NUFIP2	5	40	FAM222B	4726	chr17:27139227:-	NUFIP2	21578	chr17:27594548:-	ONLY_REF_SPLICE	YES	29	106	0.61	0.3	0.0862	0.6892	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2	KPMRTRY_SOFT_TISSUE	0.3	0.61	0.7754	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	CBX5--LLPH	1	41	CBX5	4174	chr12:54651298:-	LLPH	24258	chr12:66517798:-	ONLY_REF_SPLICE	YES	149	824	0.22	0.05	0.0172	0.7065	CBX5->chr12:54624724-54673886:-,chromobox_5,LLPH->LLP_homolog,_long-term_synaptic_facilitation,chr12:66516842-66524548:-	KPMRTRY_SOFT_TISSUE	0.05	0.22	0.7237	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	MT-TA--MT-TC	11	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1895	0.0172	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KPMRTRY_SOFT_TISSUE	1	1	0.2067	FALSE	462	80	0	856	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	AP003900.6--AC008132.1	9	6	AP003900.6	1122	chr21:11169841:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1551	0.1034	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KPMRTRY_SOFT_TISSUE	1	1	0.2585	TRUE	0	0	0	25	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	C15orf57--CBX3	8	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	51	17	0.26	0.51	0.1378	0.1723	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KPMRTRY_SOFT_TISSUE	0.26	0.51	0.3101	TRUE	267	562	48	632	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	AP003900.6--AC008132.1	5	21	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0862	0.3619	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KPMRTRY_SOFT_TISSUE	1	1	0.4481	TRUE	1	1	0	28	1	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	MT-ND6--MT-TE	9	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1551	0.0172	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPMRTRY_SOFT_TISSUE	1	1	0.1723	FALSE	499	1288	110	792	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	AP003900.6--AC008132.1	7	6	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1206	0.1034	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KPMRTRY_SOFT_TISSUE	1	1	0.224	TRUE	0	0	0	16	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	6	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.1034	0.1723	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KPMRTRY_SOFT_TISSUE	0.89	1	0.2757	FALSE	407	2205	196	549	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	NPM1P24--SET	8	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1378	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KPMRTRY_SOFT_TISSUE	1	1	0.1378	TRUE	0	0	0	434	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	PRIM2--BAG2	6	7	PRIM2	6397	chr6:57190843:+	BAG2	28471	chr6:57046830:+	ONLY_REF_SPLICE	YES	235	244	0.05	0.05	0.1034	0.1206	PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2,BAG2->BCL2_associated_athanogene_2,chr6:57037124-57054631:+	KPMRTRY_SOFT_TISSUE	0.05	0.05	0.224	TRUE	0	0	0	1	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	C15orf57--CBX3	5	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	49	18	0.23	0.45	0.0862	0.1723	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KPMRTRY_SOFT_TISSUE	0.23	0.45	0.2585	TRUE	267	562	48	632	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	FAM222B--NUFIP2	2	21	FAM222B	3499	chr17:27161311:-	NUFIP2	21578	chr17:27594548:-	ONLY_REF_SPLICE	YES	10	106	0.7	0.18	0.0345	0.3619	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2	KPMRTRY_SOFT_TISSUE	0.18	0.7	0.3964	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	UCK2--RP11-375H19.2	6	2	UCK2	1402	chr1:165797169:+	RP11-375H19.2	21465	chr1:166051842:+	ONLY_REF_SPLICE	YES	80	0	0.09	1	0.1034	0.0345	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,RP11-375H19.2->chr1:166050420-166056720:+	KPMRTRY_SOFT_TISSUE	0.09	1	0.1379	TRUE	0	4	0	1	4	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	RP1-34H18.1--RP11-781A6.1	6	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1034	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	KPMRTRY_SOFT_TISSUE	1	1	0.1034	TRUE	94	160	11	37	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	AP003900.6--AC008132.1	5	2	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	0	5	1	0.58	0.0862	0.0345	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KPMRTRY_SOFT_TISSUE	0.58	1	0.1207	TRUE	0	0	0	13	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	MT-ND6--MT-TE	5	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0.0345	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPMRTRY_SOFT_TISSUE	1	1	0.1207	FALSE	499	1288	110	792	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	RP11-120D5.1--MID1	5	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	77	0.54	0.08	0.0862	0.0345	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KPMRTRY_SOFT_TISSUE	0.08	0.54	0.1207	FALSE	16	356	14	466	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	RP4-565E6.1--HYDIN	5	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0862	0.0345	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	KPMRTRY_SOFT_TISSUE	1	1	0.1207	TRUE	456	1387	91	133	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	4	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	2	0.82	0.82	0.0689	0.0862	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KPMRTRY_SOFT_TISSUE	0.82	0.82	0.1551	FALSE	515	4851	409	746	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	MT-ND6--MT-TE	5	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPMRTRY_SOFT_TISSUE	1	1	0.0862	FALSE	499	1288	110	792	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	RP11-634B7.4--TRIM58	5	0	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0862	0	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	KPMRTRY_SOFT_TISSUE	1	1	0.0862	TRUE	158	633	76	73	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	UCK2--RP11-375H19.2	5	0	UCK2	1402	chr1:165797169:+	RP11-375H19.2	22592	chr1:166056324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0862	0	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,RP11-375H19.2->chr1:166050420-166056720:+	KPMRTRY_SOFT_TISSUE	1	1	0.0862	TRUE	0	4	0	1	4	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	MT-ND6--MT-TE	4	1	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0.0172	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPMRTRY_SOFT_TISSUE	1	1	0.0861	FALSE	499	1288	110	792	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	SLC35A3--AGL	3	5	SLC35A3	10358	chr1:100483371:+	AGL	30151	chr1:100343197:+	ONLY_REF_SPLICE	YES	24	25	0.25	0.24	0.0517	0.0862	LOCAL_REARRANGEMENT:+:[45766],SLC35A3->chr1:100435345-100492535:+,solute_carrier_family_35_member_A3,AGL->amylo-alpha-1,_6-glucosidase,_4-alpha-glucanotransferase,chr1:100315640-100389579:+	KPMRTRY_SOFT_TISSUE	0.24	0.25	0.1379	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KPMRTRY_SOFT_TISSUE	1	1	0.0689	FALSE	462	80	0	856	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	AP003900.6--AC008132.1	3	3	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	0	5	1	0.55	0.0517	0.0517	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KPMRTRY_SOFT_TISSUE	0.55	1	0.1034	TRUE	0	0	0	13	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	MT-ND6--MT-TE	3	2	MT-ND6	1053	chrM:14621:-	MT-TE	4526	chrM:14742:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0.0345	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPMRTRY_SOFT_TISSUE	1	1	0.0862	FALSE	499	1288	110	792	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	AP003900.6--AC008132.1	1	9	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0.1551	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KPMRTRY_SOFT_TISSUE	1	1	0.1723	TRUE	0	0	0	11	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	ARHGDIB--RERG	3	0	ARHGDIB	1192	chr12:15114471:-	RERG	21135	chr12:15274053:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	ARHGDIB->Rho_GDP_dissociation_inhibitor_beta,chr12:15094951-15114662:-,RERG->RAS_like_estrogen_regulated_growth_inhibitor,chr12:15260717-15501609:-	KPMRTRY_SOFT_TISSUE	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	RP11-166D19.1--DNM3OS	3	0	RP11-166D19.1	5868	chr11:121971082:-	DNM3OS	18442	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	GTEx_FI:{Ovary=[count:4=pct:7.5],Blood_Vessel=[count:3=pct:0.8],Thyroid=[count:2=pct:1.1],Uterus=[count:1=pct:2.3],Esophagus=[count:1=pct:0.2]},RP11-166D19.1->chr11:121899063-121987031:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	KPMRTRY_SOFT_TISSUE	1	1	0.0517	TRUE	11	20	1	11	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	AP003900.6--AC008132.1	1	7	AP003900.6	2187	chr21:11172043:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0172	0.1206	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KPMRTRY_SOFT_TISSUE	1	1	0.1378	TRUE	0	0	0	3	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	NR2F1-AS1--FAM172A	2	1	NR2F1-AS1	1320	chr5:92921035:-	FAM172A	38318	chr5:92956835:-	ONLY_REF_SPLICE	YES	3	61	0.5	0.05	0.0345	0.0172	LOCAL_REARRANGEMENT:-:[32421],NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	KPMRTRY_SOFT_TISSUE	0.05	0.5	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	ERC2--WNT5A	2	0	ERC2	18699	chr3:55984453:-	WNT5A	39144	chr3:55514946:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	NEIGHBORS[18363],ERC2->ELKS/RAB6-interacting/CAST_family_member_2,Oncogene{Bushman},chr3:55542336-56502391:-,WNT5A->Oncogene{Bushman},Wnt_family_member_5A,chr3:55499743-55523973:-	KPMRTRY_SOFT_TISSUE	1	1	0.0345	FALSE	0	0	0	1	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	PRIM2--BAG2	1	4	PRIM2	5276	chr6:57189078:+	BAG2	28471	chr6:57046830:+	ONLY_REF_SPLICE	YES	308	244	0.02	0.02	0.0172	0.0689	PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2,BAG2->BCL2_associated_athanogene_2,chr6:57037124-57054631:+	KPMRTRY_SOFT_TISSUE	0.02	0.02	0.0861	TRUE	0	0	0	1	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	PRIM2--BAG2	1	4	PRIM2	6397	chr6:57190843:+	BAG2	29581	chr6:57048576:+	ONLY_REF_SPLICE	NO	235	269	0.02	0.02	0.0172	0.0689	PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2,BAG2->BCL2_associated_athanogene_2,chr6:57037124-57054631:+	KPMRTRY_SOFT_TISSUE	0.02	0.02	0.0861	TRUE	0	0	0	1	0	FALSE	ACH-001109
KPMRTRY_SOFT_TISSUE	RP11-53O19.1--PRPF40A	2	0	RP11-53O19.1	1136	chr5:44808744:-	PRPF40A	16889	chr2:153551136:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	RP11-53O19.1->chr5:44745002-44808879:-,PRPF40A->chr2:153508107-153574511:-,pre-mRNA_processing_factor_40_homolog_A	KPMRTRY_SOFT_TISSUE	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-001109
KPMRTRY_SOFT_TISSUE	RSU1--FAM20B	2	0	RSU1	6309	chr10:16794538:-	FAM20B	16751	chr1:179012850:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	RSU1->Ras_suppressor_protein_1,chr10:16632610-16859527:-,FAM20B->chr1:178994939-179045697:+,family_with_sequence_similarity_20_member_B	KPMRTRY_SOFT_TISSUE	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-001109
NCIH1048_LUNG	TIMM23B--LINC00843	79	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8902	0.2028	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1048_LUNG	1	1	1.093	TRUE	508	994	45	981	0	FALSE	ACH-000866
NCIH1048_LUNG	AP003900.6--AP000345.1	68	0	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.7663	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1048_LUNG	1	1	0.7663	TRUE	4	17	0	31	0	FALSE	ACH-000866
NCIH1048_LUNG	TIMM23--RP11-464F9.1	42	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4733	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1048_LUNG	1	1	0.4733	TRUE	519	3926	326	965	0	FALSE	ACH-000866
NCIH1048_LUNG	ZNF654--HMGB2	39	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4395	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1048_LUNG	1	1	0.4395	TRUE	0	0	0	518	0	FALSE	ACH-000866
NCIH1048_LUNG	CALM3--MYL6	38	1	CALM3	4231	chr19:47109114:+	MYL6	12975	chr12:56553371:+	ONLY_REF_SPLICE	NO	1682	44	0.02	0.47	0.4282	0.0113	HGNC_GENEFAM,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	NCIH1048_LUNG	0.02	0.47	0.4395	TRUE	0	0	0	8	0	FALSE	ACH-000866
NCIH1048_LUNG	EFTUD2--PLCD3	22	9	EFTUD2	20380	chr17:42941023:-	PLCD3	39710	chr17:43196410:-	ONLY_REF_SPLICE	YES	198	18	0.14	0.63	0.2479	0.1014	{Klijn_CCL:Lung=1},EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2,PLCD3->chr17:43186335-43210721:-,phospholipase_C_delta_3	NCIH1048_LUNG	0.14	0.63	0.3493	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	MT-TA--MT-TC	22	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2479	0.0225	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1048_LUNG	1	1	0.2704	FALSE	462	80	0	856	0	FALSE	ACH-000866
NCIH1048_LUNG	RP11-123O10.4--GRIP1	18	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2028	0.0113	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1048_LUNG	1	1	0.2141	FALSE	416	2512	207	587	0	FALSE	ACH-000866
NCIH1048_LUNG	PLXDC1--TAF13	18	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2028	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH1048_LUNG	1	1	0.2028	TRUE	7	10	0	216	0	FALSE	ACH-000866
NCIH1048_LUNG	C15orf57--CBX3	15	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	36	52	0.41	0.32	0.169	0.1127	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1048_LUNG	0.32	0.41	0.2817	TRUE	267	562	48	632	0	FALSE	ACH-000866
NCIH1048_LUNG	CALM3--MT-ND4L	13	12	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1608	0	0.02	1	0.1465	0.1352	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1048_LUNG	0.02	1	0.2817	FALSE	1	1	0	107	0	FALSE	ACH-000866
NCIH1048_LUNG	NPM1P24--SET	15	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.169	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1048_LUNG	1	1	0.169	TRUE	0	0	0	434	0	FALSE	ACH-000866
NCIH1048_LUNG	MT-CO3--MT-ATP6	14	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1578	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1048_LUNG	1	1	0.1578	FALSE	189	492	56	216	0	FALSE	ACH-000866
NCIH1048_LUNG	MT-ND6--MT-TE	13	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1465	0.0338	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1048_LUNG	1	1	0.1803	FALSE	499	1288	110	792	0	FALSE	ACH-000866
NCIH1048_LUNG	AC015987.2--MT-ND1	12	2	AC015987.2	2536	chr7:135613077:+	MT-ND1	5676	chrM:3309:+	INCL_NON_REF_SPLICE	YES	123	0	0.1	1	0.1352	0.0225	AC015987.2->chr7:135611542-135613214:+,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1048_LUNG	0.1	1	0.1577	FALSE	0	0	0	3	0	FALSE	ACH-000866
NCIH1048_LUNG	SAMD5--SASH1	12	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1352	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NCIH1048_LUNG	1	1	0.1352	TRUE	53	396	64	110	0	FALSE	ACH-000866
NCIH1048_LUNG	AP003900.6--AP000345.1	10	4	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1127	0.0451	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1048_LUNG	0.88	1	0.1578	TRUE	0	8	0	37	1	FALSE	ACH-000866
NCIH1048_LUNG	MT-CO3--MT-ATP6	3	27	MT-CO3	1642	chrM:9848:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	0	107	1	0.22	0.0338	0.3043	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1048_LUNG	0.22	1	0.3381	FALSE	189	492	56	216	0	FALSE	ACH-000866
NCIH1048_LUNG	MT-ND6--MT-TE	7	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0789	0.124	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1048_LUNG	0.9	1	0.2029	FALSE	499	1288	110	792	0	FALSE	ACH-000866
NCIH1048_LUNG	USP47--STMN1	9	1	USP47	29988	chr11:11974418:+	STMN1	44320	chr1:26227578:-	ONLY_REF_SPLICE	NO	85	2115	0.11	0	0.1014	0.0113	USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,STMN1->chr1:26210672-26233482:-,stathmin_1	NCIH1048_LUNG	0	0.11	0.1127	TRUE	0	0	0	1	0	FALSE	ACH-000866
NCIH1048_LUNG	PRMT3--NAV2	8	2	PRMT3	12310	chr11:20429578:+	NAV2	45529	chr11:20057505:+	ONLY_REF_SPLICE	YES	42	28	0.19	0.26	0.0902	0.0225	PRMT3->chr11:20409076-20530840:+,protein_arginine_methyltransferase_3,NAV2->chr11:19372271-20143144:+,neuron_navigator_2	NCIH1048_LUNG	0.19	0.26	0.1127	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	MT-CO3--MT-ATP6	3	20	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	3	0.96	0.88	0.0338	0.2254	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1048_LUNG	0.88	0.96	0.2592	FALSE	189	492	56	216	0	FALSE	ACH-000866
NCIH1048_LUNG	MT-ND1--MT-RNR2	8	0	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0902	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1048_LUNG	1	1	0.0902	FALSE	114	26	4	85	0	FALSE	ACH-000866
NCIH1048_LUNG	MT-TA--MT-TC	7	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0.0338	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1048_LUNG	1	1	0.1127	FALSE	462	80	0	856	0	FALSE	ACH-000866
NCIH1048_LUNG	HSP90AB1--MT-RNR2	7	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2210	0	0	1	0.0789	0.0225	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1048_LUNG	0	1	0.1014	FALSE	13	9	0	364	0	FALSE	ACH-000866
NCIH1048_LUNG	MT-ND4--MT-CO2	6	3	MT-ND4	1496	chrM:11255:+	MT-CO2	5511	chrM:7718:+	INCL_NON_REF_SPLICE	YES	12214	3480	0	0	0.0676	0.0338	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1048_LUNG	0	0	0.1014	FALSE	5	1	0	19	0	FALSE	ACH-000866
NCIH1048_LUNG	HSP90AB1--MT-RNR2	6	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2240	0	0	1	0.0676	0.0225	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1048_LUNG	0	1	0.0901	FALSE	13	9	0	364	0	FALSE	ACH-000866
NCIH1048_LUNG	MT-ND6--MT-TE	5	6	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0.0676	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1048_LUNG	1	1	0.1239	FALSE	499	1288	110	792	0	FALSE	ACH-000866
NCIH1048_LUNG	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0676	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1048_LUNG	1	1	0.0676	TRUE	465	1949	224	605	0	FALSE	ACH-000866
NCIH1048_LUNG	USPL1--LINC00401	5	4	USPL1	4824	chr13:31205611:+	LINC00401	15431	chr13:69885467:+	INCL_NON_REF_SPLICE	YES	17	0	0.35	1	0.0563	0.0451	USPL1->chr13:31191830-31233686:+,ubiquitin_specific_peptidase_like_1,LINC00401->chr13:69885465-69896233:+	NCIH1048_LUNG	0.35	1	0.1014	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	MT-ND5--MT-ND6	4	7	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	1	2823	0.92	0	0.0451	0.0789	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH1048_LUNG	0	0.92	0.124	FALSE	26	124	4	93	0	FALSE	ACH-000866
NCIH1048_LUNG	PRR16--CTD-2334D19.1	5	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	40	0	0.15	1	0.0563	0.0225	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH1048_LUNG	0.15	1	0.0788	FALSE	56	216	12	147	0	FALSE	ACH-000866
NCIH1048_LUNG	MT-ND6--MT-TE	3	7	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0.0789	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1048_LUNG	1	1	0.1127	FALSE	499	1288	110	792	0	FALSE	ACH-000866
NCIH1048_LUNG	MT-ND6--MT-TE	4	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0.0338	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1048_LUNG	1	1	0.0789	FALSE	499	1288	110	792	0	FALSE	ACH-000866
NCIH1048_LUNG	MT-TA--MT-TC	4	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0.0338	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1048_LUNG	1	1	0.0789	FALSE	462	80	0	856	0	FALSE	ACH-000866
NCIH1048_LUNG	ZBTB20--TIGIT	4	3	ZBTB20	36998	chr3:114099064:-	TIGIT	50500	chr3:114014392:+	ONLY_REF_SPLICE	YES	9	0	0.44	1	0.0451	0.0338	LOCAL_INVERSION:-:+:[27806],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,TIGIT->T-cell_immunoreceptor_with_Ig_and_ITIM_domains,chr3:113995760-114029135:+	NCIH1048_LUNG	0.44	1	0.0789	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	AC015987.2--MT-ND1	4	2	AC015987.2	2658	chr7:135613199:+	MT-ND1	5710	chrM:3343:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0.0225	AC015987.2->chr7:135611542-135613214:+,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1048_LUNG	1	1	0.0676	FALSE	0	0	0	3	0	FALSE	ACH-000866
NCIH1048_LUNG	RP11-120D5.1--MID1	4	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	70	1	0.08	0.0451	0.0225	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1048_LUNG	0.08	1	0.0676	FALSE	16	356	14	466	0	FALSE	ACH-000866
NCIH1048_LUNG	USP54--TTC18	4	1	USP54	10006	chr10:75335270:-	TTC18	53041	chr10:75059423:-	ONLY_REF_SPLICE	YES	10	4	0.33	0.56	0.0451	0.0113	USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54,TTC18->chr10:75013517-75118617:-	NCIH1048_LUNG	0.33	0.56	0.0564	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1048_LUNG	1	1	0.0451	FALSE	189	492	56	216	0	FALSE	ACH-000866
NCIH1048_LUNG	AC005152.2--LINC00511	3	3	AC005152.2	4396	chr17:70137826:-	LINC00511	51836	chr17:70400957:-	ONLY_REF_SPLICE	YES	0	33	1	0.15	0.0338	0.0338	AC005152.2->chr17:70033455-70217977:-,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	NCIH1048_LUNG	0.15	1	0.0676	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	PCAT1--RP11-382A18.2	3	3	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0338	0.0338	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	NCIH1048_LUNG	0.75	1	0.0676	TRUE	4	84	1	46	0	FALSE	ACH-000866
NCIH1048_LUNG	PRR16--CTD-2334D19.1	3	3	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	10	0	0.38	1	0.0338	0.0338	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH1048_LUNG	0.38	1	0.0676	FALSE	21	45	1	60	0	FALSE	ACH-000866
NCIH1048_LUNG	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0.0225	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1048_LUNG	1	1	0.0563	FALSE	462	80	0	856	0	FALSE	ACH-000866
NCIH1048_LUNG	MT-TA--MT-TC	3	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0.0113	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1048_LUNG	1	1	0.0451	FALSE	462	80	0	856	0	FALSE	ACH-000866
NCIH1048_LUNG	PSPC1--ZMYM5	3	1	PSPC1	6297	chr13:20315705:-	ZMYM5	19844	chr13:20426330:-	ONLY_REF_SPLICE	YES	217	43	0.02	0.09	0.0338	0.0113	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_REARRANGEMENT:-:[40480],PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,ZMYM5->chr13:20397622-20437776:-,zinc_finger_MYM-type_containing_5	NCIH1048_LUNG	0.02	0.09	0.0451	TRUE	0	0	0	1	0	FALSE	ACH-000866
NCIH1048_LUNG	AP003900.6--AP000345.1	3	0	AP003900.6	2187	chr21:11172043:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1048_LUNG	1	1	0.0338	TRUE	1	2	0	16	0	FALSE	ACH-000866
NCIH1048_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1048_LUNG	1	1	0.0338	FALSE	189	492	56	216	0	FALSE	ACH-000866
NCIH1048_LUNG	MT-ND1--MT-RNR2	3	0	MT-ND1	1272	chrM:3578:+	MT-RNR2	5546	chrM:2260:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1048_LUNG	1	1	0.0338	FALSE	120	26	5	87	0	FALSE	ACH-000866
NCIH1048_LUNG	MT-ND1--MT-RNR2	3	0	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1048_LUNG	1	1	0.0338	FALSE	114	26	4	85	0	FALSE	ACH-000866
NCIH1048_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1048_LUNG	1	1	0.0338	FALSE	499	1288	110	792	0	FALSE	ACH-000866
NCIH1048_LUNG	GATAD2A--NCAN	2	1	GATAD2A	1313	chr19:19496947:+	NCAN	26944	chr19:19327756:+	ONLY_REF_SPLICE	YES	16	0	0.16	1	0.0225	0.0113	GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,NCAN->chr19:19322782-19363042:+,neurocan	NCIH1048_LUNG	0.16	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	SPSB4--ACPL2	2	1	SPSB4	3438	chr3:140785640:+	ACPL2	24446	chr3:140997184:+	ONLY_REF_SPLICE	YES	72	73	0.04	0.04	0.0225	0.0113	NEIGHBORS[80115],SPSB4->chr3:140770244-140867453:+,splA/ryanodine_receptor_domain_and_SOCS_box_containing_4,ACPL2->chr3:140947568-141013748:+	NCIH1048_LUNG	0.04	0.04	0.0338	FALSE	0	10	0	3	0	FALSE	ACH-000866
NCIH1048_LUNG	UHRF1BP1L--RP11-175P13.3	2	1	UHRF1BP1L	1257	chr12:100536370:-	RP11-175P13.3	32948	chr12:100592750:-	ONLY_REF_SPLICE	YES	32	21	0.09	0.12	0.0225	0.0113	LOCAL_REARRANGEMENT:-:[30348],UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-,RP11-175P13.3->chr12:100566974-100593561:-	NCIH1048_LUNG	0.09	0.12	0.0338	TRUE	0	0	0	1	0	FALSE	ACH-000866
NCIH1048_LUNG	UHRF1BP1L--RP11-175P13.3	2	1	UHRF1BP1L	1257	chr12:100536370:-	RP11-175P13.3	36274	chr12:100574494:-	ONLY_REF_SPLICE	YES	32	18	0.09	0.14	0.0225	0.0113	LOCAL_REARRANGEMENT:-:[30348],UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-,RP11-175P13.3->chr12:100566974-100593561:-	NCIH1048_LUNG	0.09	0.14	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	FANCD2--RARS	2	0	FANCD2	35472	chr3:10133936:+	RARS	50212	chr5:167920899:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	FANCD2->ArcherDX_panel,Fanconi_anemia_complementation_group_D2,FoundationOne_panel,Oncogene{Bushman},chr3:10068098-10143614:+,RARS->arginyl-tRNA_synthetase,chr5:167913450-167946304:+	NCIH1048_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	PPP1R12C--CNN2	2	0	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	NCIH1048_LUNG	1	1	0.0225	TRUE	35	34	3	30	0	FALSE	ACH-000866
NCIH1048_LUNG	PVT1--SNTB1	2	0	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH1048_LUNG	1	1	0.0225	TRUE	0	0	0	25	0	FALSE	ACH-000866
NCIH1048_LUNG	RP1-197B17.3--RHOA	2	0	RP1-197B17.3	1079	chr12:48099946:+	RHOA	16496	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RP1-197B17.3->chr12:48099868-48136077:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	NCIH1048_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	RP11-1379J22.5--WDR89	2	0	RP11-1379J22.5	1720	chr5:179085482:+	WDR89	9629	chr14:64066691:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RP11-1379J22.5->chr5:179084763-179091433:+,WDR89->WD_repeat_domain_89,chr14:64063757-64108579:-	NCIH1048_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	RP11-466L17.1--RP11-90C4.1	2	0	RP11-466L17.1	2240	chr1:56080675:+	RP11-90C4.1	11159	chr1:56297937:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	NEIGHBORS[88805],RP11-466L17.1->chr1:56046710-56200675:+,RP11-90C4.1->chr1:56289480-56333921:+	NCIH1048_LUNG	1	1	0.0225	FALSE	351	187	22	6	0	FALSE	ACH-000866
NCIH1048_LUNG	RP11-510H23.1--GTF2H5	2	0	RP11-510H23.1	1217	chr6:125283969:-	GTF2H5	16621	chr6:158613009:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RP11-510H23.1->chr6:125230239-125284185:-,GTF2H5->chr6:158589384-158620376:+,general_transcription_factor_IIH_subunit_5	NCIH1048_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	SPECC1L--SMARCB1	2	0	SPECC1L	1166	chr22:24666951:+	SMARCB1	36752	chr22:24175759:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,SMARCB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_b,_member_1,chr22:24129150-24176703:+	NCIH1048_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	ST14--APLP2	2	0	ST14	1499	chr11:130029955:+	APLP2	38234	chr11:130010293:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LOCAL_REARRANGEMENT:+:[14758],ST14->chr11:130029457-130080271:+,suppression_of_tumorigenicity_14,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	NCIH1048_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1048_LUNG	1	1	0.0225	TRUE	62	24	1	171	0	FALSE	ACH-000866
NCIH1048_LUNG	C5orf46--RP11-373N22.3	1	3	C5orf46	2252	chr5:147281192:-	RP11-373N22.3	12824	chr5:147670558:-	ONLY_REF_SPLICE	YES	3	2	0.57	0.67	0.0113	0.0338	C5orf46->chr5:147260289-147286101:-,chromosome_5_open_reading_frame_46,RP11-373N22.3->chr5:147647870-147763346:-	NCIH1048_LUNG	0.57	0.67	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	GATAD2A--NCAN	1	3	GATAD2A	4016	chr19:19538801:+	NCAN	26944	chr19:19327756:+	ONLY_REF_SPLICE	YES	22	0	0.15	1	0.0113	0.0338	GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,NCAN->chr19:19322782-19363042:+,neurocan	NCIH1048_LUNG	0.15	1	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	GATAD2A--NCAN	1	3	GATAD2A	5105	chr19:19547028:+	NCAN	26944	chr19:19327756:+	ONLY_REF_SPLICE	YES	21	0	0.16	1	0.0113	0.0338	GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,NCAN->chr19:19322782-19363042:+,neurocan	NCIH1048_LUNG	0.16	1	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000866
NCIH1048_LUNG	CCSER1--MMRN1	1	2	CCSER1	1297	chr4:91048982:+	MMRN1	41500	chr4:90815875:+	ONLY_REF_SPLICE	YES	14	0	0.18	1	0.0113	0.0225	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	NCIH1048_LUNG	0.18	1	0.0338	TRUE	0	3	0	5	3	TRUE	ACH-000866
NCIH1048_LUNG	PRR16--CTD-2334D19.1	1	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	40	0	0.07	1	0.0113	0.0225	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH1048_LUNG	0.07	1	0.0338	FALSE	1	13	0	24	0	FALSE	ACH-000866
NCIH1048_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	0	33	1	0.08	0.0113	0.0225	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1048_LUNG	0.08	1	0.0338	FALSE	0	23	1	67	0	FALSE	ACH-000866
NCIH1048_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	4	70	0.43	0.04	0.0113	0.0225	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1048_LUNG	0.04	0.43	0.0338	FALSE	0	48	1	163	0	FALSE	ACH-000866
NCIH1048_LUNG	C19orf25--DAZAP1	1	1	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	NO	89	276	0.02	0.01	0.0113	0.0113	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	NCIH1048_LUNG	0.01	0.02	0.0226	FALSE	6	7	1	24	0	FALSE	ACH-000866
NCIH1048_LUNG	CPSF6--IVNS1ABP	1	1	CPSF6	11046	chr12:69656342:+	IVNS1ABP	26367	chr1:185274775:-	ONLY_REF_SPLICE	YES	260	838	0.01	0	0.0113	0.0113	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=2},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NCIH1048_LUNG	0	0.01	0.0226	FALSE	0	0	0	3	0	FALSE	ACH-000866
NCIH1048_LUNG	DANCR--UBE2D2	1	1	DANCR	1530	chr4:53579126:+	UBE2D2	10718	chr5:138979957:+	ONLY_REF_SPLICE	YES	583	82	0	0.02	0.0113	0.0113	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	NCIH1048_LUNG	0	0.02	0.0226	FALSE	0	5	0	2	2	FALSE	ACH-000866
NCIH1048_LUNG	RP1-27O5.3--HDAC1	1	1	RP1-27O5.3	5492	chr1:32950933:+	HDAC1	19310	chr1:32790080:+	ONLY_REF_SPLICE	YES	0	550	1	0	0.0113	0.0113	RP1-27O5.3->chr1:32930658-33066393:+,HDAC1->chr1:32757687-32799236:+,histone_deacetylase_1	NCIH1048_LUNG	0	1	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000866
NCIH1048_LUNG	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0113	0.0113	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1048_LUNG	0.67	1	0.0226	FALSE	407	2205	196	549	0	FALSE	ACH-000866
NCIH1048_LUNG	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0113	0.0113	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1048_LUNG	0.67	1	0.0226	FALSE	515	4851	409	746	0	FALSE	ACH-000866
NCIH1048_LUNG	SPSB4--ACPL2	1	1	SPSB4	3438	chr3:140785640:+	ACPL2	18637	chr3:140978965:+	ONLY_REF_SPLICE	YES	72	7	0.03	0.22	0.0113	0.0113	NEIGHBORS[80115],SPSB4->chr3:140770244-140867453:+,splA/ryanodine_receptor_domain_and_SOCS_box_containing_4,ACPL2->chr3:140947568-141013748:+	NCIH1048_LUNG	0.03	0.22	0.0226	FALSE	0	11	0	4	0	FALSE	ACH-000866
LN340_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	91	82	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	68	147	0.72	0.54	1.1084	0.9988	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	LN340_CENTRAL_NERVOUS_SYSTEM	0.54	0.72	2.1072	TRUE	181	1564	124	196	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	KMT2C--NCAPG2	85	74	KMT2C	1380	chr7:152132711:-	NCAPG2	109192	chr7:158424409:-	ONLY_REF_SPLICE	YES	11	378	0.94	0.3	1.0354	0.9014	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,NCAPG2->chr7:158424003-158497520:-,non-SMC_condensin_II_complex_subunit_G2	LN340_CENTRAL_NERVOUS_SYSTEM	0.3	0.94	1.9368	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	USP39--SH2D6	64	38	USP39	10516	chr2:85858069:+	SH2D6	28459	chr2:85655707:+	ONLY_REF_SPLICE	YES	227	0	0.31	1	0.7796	0.4629	USP39->Oncogene{Bushman},chr2:85829979-85876403:+,ubiquitin_specific_peptidase_39,SH2D6->SH2_domain_containing_6,chr2:85645844-85664152:+	LN340_CENTRAL_NERVOUS_SYSTEM	0.31	1	1.2425	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	64	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7796	0.3411	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LN340_CENTRAL_NERVOUS_SYSTEM	0.99	1	1.1207	TRUE	508	994	45	981	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RORA--ANXA2	50	33	RORA	13827	chr15:60884586:-	ANXA2	59082	chr15:60656722:-	ONLY_REF_SPLICE	YES	2	8350	0.98	0.01	0.609	0.402	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	LN340_CENTRAL_NERVOUS_SYSTEM	0.01	0.98	1.011	FALSE	2	1	0	8	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	33	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	481	2	0.07	0.95	0.402	0.0731	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LN340_CENTRAL_NERVOUS_SYSTEM	0.07	0.95	0.4751	TRUE	519	3926	326	965	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	28	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3411	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.3411	FALSE	462	80	0	856	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	COL6A3--MT-RNR2	25	6	COL6A3	41635	chr2:238249354:-	MT-RNR2	57522	chrM:1699:+	INCL_NON_REF_SPLICE	YES	5674	0	0.01	1	0.3045	0.0731	COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN340_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.3776	FALSE	0	0	0	6	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	USP39--SH2D6	21	20	USP39	10516	chr2:85858069:+	SH2D6	29247	chr2:85656495:+	ONLY_REF_SPLICE	YES	227	3	0.15	0.93	0.2558	0.2436	USP39->Oncogene{Bushman},chr2:85829979-85876403:+,ubiquitin_specific_peptidase_39,SH2D6->SH2_domain_containing_6,chr2:85645844-85664152:+	LN340_CENTRAL_NERVOUS_SYSTEM	0.15	0.93	0.4994	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	KMT2C--NCAPG2	4	80	KMT2C	1380	chr7:152132711:-	NCAPG2	105333	chr7:158437080:-	ONLY_REF_SPLICE	YES	11	431	0.88	0.16	0.0487	0.9745	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,NCAPG2->chr7:158424003-158497520:-,non-SMC_condensin_II_complex_subunit_G2	LN340_CENTRAL_NERVOUS_SYSTEM	0.16	0.88	1.0232	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	24	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2923	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.2923	TRUE	0	0	0	518	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MIPEPP3--ABHD12	22	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.268	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.268	TRUE	64	202	9	44	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	20	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2436	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.2436	TRUE	402	216	10	229	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	20	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2436	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.2436	TRUE	7	10	0	216	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	17	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2071	0.0487	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.2558	TRUE	458	1351	185	561	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	14	8	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	542	1	0.04	0.96	0.1705	0.0974	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	LN340_CENTRAL_NERVOUS_SYSTEM	0.04	0.96	0.2679	FALSE	56	216	12	147	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	12	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	6	1	0.76	0.1462	0.0853	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN340_CENTRAL_NERVOUS_SYSTEM	0.76	1	0.2315	TRUE	477	1352	189	275	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	10	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.1218	0.1583	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN340_CENTRAL_NERVOUS_SYSTEM	0.96	1	0.2801	FALSE	515	4851	409	746	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	6	17	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.0731	0.2071	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN340_CENTRAL_NERVOUS_SYSTEM	0.96	1	0.2802	FALSE	407	2205	196	549	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	9	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	23	1	0.36	0.1096	0.0487	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN340_CENTRAL_NERVOUS_SYSTEM	0.36	1	0.1583	TRUE	465	1949	224	605	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	7	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	155	70	0.09	0.18	0.0853	0.0974	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LN340_CENTRAL_NERVOUS_SYSTEM	0.09	0.18	0.1827	TRUE	267	562	48	632	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	9	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1096	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.1096	FALSE	183	104	9	328	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	8	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0974	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0974	FALSE	63	17	1	58	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	7	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3923	0	0	1	0.0853	0.0122	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN340_CENTRAL_NERVOUS_SYSTEM	0	1	0.0975	FALSE	13	9	0	364	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	1	22	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	85	147	0.21	0.14	0.0122	0.268	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	LN340_CENTRAL_NERVOUS_SYSTEM	0.14	0.21	0.2802	TRUE	105	90	7	93	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	6	2	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	10391	0	0	1	0.0731	0.0244	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN340_CENTRAL_NERVOUS_SYSTEM	0	1	0.0975	FALSE	63	17	1	58	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	6	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0731	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0731	FALSE	63	17	1	58	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0731	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0731	FALSE	292	1546	117	613	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	3	11	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	188	1	0.07	0.93	0.0365	0.134	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	LN340_CENTRAL_NERVOUS_SYSTEM	0.07	0.93	0.1705	FALSE	21	45	1	60	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	DPM2--PTGES2	4	5	DPM2	2932	chr9:130698832:-	PTGES2	9411	chr9:130887720:-	ONLY_REF_SPLICE	YES	893	248	0.01	0.04	0.0487	0.0609	DPM2->chr9:130697378-130700763:-,dolichyl-phosphate_mannosyltransferase_polypeptide_2,_regulatory_subunit,PTGES2->chr9:130882972-130890741:-,prostaglandin_E_synthase_2	LN340_CENTRAL_NERVOUS_SYSTEM	0.01	0.04	0.1096	TRUE	0	0	0	1	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	5	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3948	0	0	1	0.0609	0.0122	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN340_CENTRAL_NERVOUS_SYSTEM	0	1	0.0731	FALSE	13	9	0	364	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	9972	9139	0	0	0.0609	0.0122	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN340_CENTRAL_NERVOUS_SYSTEM	0	0	0.0731	FALSE	63	17	1	58	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	5	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2161	60	0	0.13	0.0487	0.0609	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN340_CENTRAL_NERVOUS_SYSTEM	0	0.13	0.1096	FALSE	216	209	16	281	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	17	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.0122	0.2071	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN340_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.2193	FALSE	275	511	55	178	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	5	0	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0609	FALSE	462	80	0	856	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	PDCD2L--LSM14A	5	0	PDCD2L	4129	chr19:34904752:+	LSM14A	10802	chr19:34685383:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0609	0	PDCD2L->chr19:34895289-34917073:+,programmed_cell_death_2-like,LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	TTC37--SPATA9	5	0	TTC37	1072	chr5:94890640:-	SPATA9	53630	chr5:94988913:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0609	0	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},LOCAL_REARRANGEMENT:-:[97174],TTC37->chr5:94799599-94890711:-,tetratricopeptide_repeat_domain_37,SPATA9->chr5:94987885-95034415:-,spermatogenesis_associated_9	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	VIM--PPIA	5	0	VIM	2122	chr10:17271379:+	PPIA	12215	chr7:44836289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	VIM->chr10:17270258-17279592:+,vimentin,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0609	TRUE	0	0	0	6	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	COL1A2--COL6A3	3	7	COL1A2	22079	chr7:94049598:+	COL6A3	59059	chr2:238268802:-	ONLY_REF_SPLICE	NO	6294	4964	0	0	0.0365	0.0853	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	LN340_CENTRAL_NERVOUS_SYSTEM	0	0	0.1218	TRUE	0	0	0	1	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	4	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	8	69	0.47	0.09	0.0487	0.0365	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LN340_CENTRAL_NERVOUS_SYSTEM	0.09	0.47	0.0852	FALSE	16	356	14	466	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	4	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	7310	1	0	0.86	0.0487	0.0244	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	LN340_CENTRAL_NERVOUS_SYSTEM	0	0.86	0.0731	FALSE	1	0	0	97	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	4	2	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	6732	1	0	0.86	0.0487	0.0244	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	LN340_CENTRAL_NERVOUS_SYSTEM	0	0.86	0.0731	FALSE	1	0	0	97	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	3	6	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	1	6	0.9	0.6	0.0365	0.0731	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN340_CENTRAL_NERVOUS_SYSTEM	0.6	0.9	0.1096	TRUE	274	363	69	150	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	1	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	16484	0	0	1	0.0487	0.0122	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN340_CENTRAL_NERVOUS_SYSTEM	0	1	0.0609	FALSE	231	217	16	283	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	4	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0487	0.0122	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	LN340_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.0609	TRUE	6	15	3	35	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	VIM--MT-ND4	4	1	VIM	2190	chr10:17271447:+	MT-ND4	12382	chrM:10937:+	INCL_NON_REF_SPLICE	YES	9404	4897	0	0	0.0487	0.0122	VIM->chr10:17270258-17279592:+,vimentin,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	LN340_CENTRAL_NERVOUS_SYSTEM	0	0	0.0609	FALSE	0	0	0	1	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	COL1A2--COL6A3	3	4	COL1A2	24774	chr7:94052293:+	COL6A3	66136	chr2:238261220:-	INCL_NON_REF_SPLICE	YES	7915	4607	0	0	0.0365	0.0487	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	LN340_CENTRAL_NERVOUS_SYSTEM	0	0	0.0852	FALSE	0	0	0	1	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	4	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0487	FALSE	183	104	9	328	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	0	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0487	FALSE	231	217	16	283	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	2	8	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	542	0	0.02	1	0.0244	0.0974	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	LN340_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.1218	FALSE	1	13	0	24	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0487	TRUE	22	156	2	142	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	SCARB1--UBC	4	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0487	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0487	TRUE	55	66	6	101	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	3	2	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	7330	1	0	0.83	0.0365	0.0244	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	LN340_CENTRAL_NERVOUS_SYSTEM	0	0.83	0.0609	FALSE	1	0	0	97	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	1	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	17772	188	0	0.02	0.0365	0.0122	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN340_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0487	FALSE	231	217	16	283	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	1	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	15801	0	0	1	0.0365	0.0122	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN340_CENTRAL_NERVOUS_SYSTEM	0	1	0.0487	FALSE	231	217	16	283	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	1	9	PRR16	3559	chr5:119816988:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	572	1	0.02	0.91	0.0122	0.1096	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	LN340_CENTRAL_NERVOUS_SYSTEM	0.02	0.91	0.1218	FALSE	1	5	0	12	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	TNRC18--P4HB	3	1	TNRC18	36160	chr7:5348886:-	P4HB	41820	chr17:79818376:-	INCL_NON_REF_SPLICE	NO	162	13	0.02	0.24	0.0365	0.0122	TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	LN340_CENTRAL_NERVOUS_SYSTEM	0.02	0.24	0.0487	TRUE	0	0	0	1	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0365	FALSE	230	198	14	283	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	2	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	10	69	0.33	0.07	0.0244	0.0365	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LN340_CENTRAL_NERVOUS_SYSTEM	0.07	0.33	0.0609	FALSE	0	48	1	163	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	6	1	0.57	0.0122	0.0853	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN340_CENTRAL_NERVOUS_SYSTEM	0.57	1	0.0975	TRUE	160	277	29	98	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	AL355490.1--EXOSC1	2	0	AL355490.1	1052	chr10:99185780:-	EXOSC1	12530	chr10:99197507:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	GTEx_v2:{count=3;pct=0.03%;dist=Breast_-_Mammary_Tissue=1,Lung=1,Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:-:[10068],AL355490.1->chr10:99179228-99185831:-,EXOSC1->chr10:99195899-99205774:-,exosome_component_1	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	AP2B1--TCP1	2	0	AP2B1	6077	chr17:33925354:+	TCP1	44312	chr6:160201119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	AP2B1->adaptor_related_protein_complex_2_beta_1_subunit,chr17:33905065-34053436:+,TCP1->chr6:160199530-160210781:-,t-complex_1	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	DCUN1D4--ZNF286A	2	0	DCUN1D4	1268	chr4:52709433:+	ZNF286A	34938	chr17:15619373:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	DCUN1D4->chr4:52709166-52783003:+,defective_in_cullin_neddylation_1_domain_containing_4,ZNF286A->chr17:15602891-15640874:+,chr17:15603006-15648092:+,zinc_finger_protein_286A	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	IARS--DENND2A	2	0	IARS	3934	chr9:95050073:-	DENND2A	42608	chr7:140302342:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase,DENND2A->DENN_domain_containing_2A,chr7:140218220-140373793:-	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	INVS--DENND1A	2	0	INVS	5175	chr9:102888831:+	DENND1A	31089	chr9:126641300:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	INVS->chr9:102861538-103063282:+,inversin,DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	IQCG--HACE1	2	0	IQCG	15730	chr3:197639546:-	HACE1	44409	chr6:105225192:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	IQCG->IQ_motif_containing_G,chr3:197615946-197687013:-,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	JKAMP--SNHG1	2	0	JKAMP	1151	chr14:59951311:+	SNHG1	15163	chr11:62622023:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	JKAMP->JNK1/MAPK8-associated_membrane_protein,chr14:59951161-59972128:+,SNHG1->chr11:62619460-62623386:-,small_nucleolar_RNA_host_gene_1	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	KM-PA-2--FOXK2	2	0	KM-PA-2	1054	chr8:145331100:-	FOXK2	13106	chr17:80529600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	KM-PA-2->chr8:145317003-145331153:-,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	LINC00886--RSRC1	2	0	LINC00886	1176	chr3:156534676:-	RSRC1	24469	chr3:158072646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	LINC00886->chr3:156465135-156534851:-,long_intergenic_non-protein_coding_RNA_886,RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MIR3654--TMEM165	2	0	MIR3654	2319	chr11:62356503:-	TMEM165	23453	chr4:56277781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	MIR3654->chr11:62327075-62359003:-,microRNA_3654,TMEM165->chr4:56262124-56319564:+,transmembrane_protein_165	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RBM17--AHSA2	2	0	RBM17	13284	chr10:6157274:+	AHSA2	19994	chr2:61406116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	RBM17->RNA_binding_motif_protein_17,chr10:6130950-6159420:+,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RBM23--RPS12	2	0	RBM23	6943	chr14:23378692:-	RPS12	19602	chr6:133137600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	RBM23->RNA_binding_motif_protein_23,chr14:23369854-23388393:-,RPS12->chr6:133135580-133138703:+,ribosomal_protein_S12	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RBM6--TBC1D8B	2	0	RBM6	3185	chr3:50000118:+	TBC1D8B	49559	chrX:106093255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,TBC1D8B->TBC1_domain_family_member_8B,chrX:106045910-106119375:+	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP11-163F15.1--RP11-215N21.1	2	0	RP11-163F15.1	1139	chr10:110321435:-	RP11-215N21.1	6576	chr10:109871360:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	RP11-163F15.1->chr10:110307733-110321573:-,RP11-215N21.1->chr10:109517591-109871360:-	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	5	0	7	5	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	4	2	0	28	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	18992	chr12:23999127:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	3	4	0	10	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP6-99M1.2--KDM6A	2	0	RP6-99M1.2	1489	chrX:45629189:-	KDM6A	9263	chrX:44820529:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	RP6-99M1.2->chrX:45604639-45629677:-,KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	SDCBP2-AS1--NSFL1C	2	0	SDCBP2-AS1	1125	chr20:1306173:+	NSFL1C	27361	chr20:1426475:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	LOCAL_INVERSION:+:-:[63429],SDCBP2-AS1->SDCBP2_antisense_RNA_1,chr20:1306049-1359378:+,NSFL1C->NSFL1_cofactor,chr20:1422807-1454487:-	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	SOCS2--YBX1	2	0	SOCS2	6360	chr12:93968949:+	YBX1	13374	chr1:43149074:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	SOCS2->Oncogene{Bushman},chr12:93963590-93977263:+,suppressor_of_cytokine_signaling_2,YBX1->Oncogene{Bushman},Y-box_binding_protein_1,chr1:43148098-43168020:+	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	SPG20--DCLK1	2	0	SPG20	2308	chr13:36920719:-	DCLK1	24707	chr13:36521594:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	SPG20->chr13:36875775-36944317:-,spastic_paraplegia_20_(Troyer_syndrome),DCLK1->chr13:36345478-36705443:-,doublecortin_like_kinase_1	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	WTAPP1--RUVBL1	2	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	9	252	6	66	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	ZNF738--CHMP1A	2	0	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	LN340_CENTRAL_NERVOUS_SYSTEM	1	1	0.0244	TRUE	1	20	1	28	3	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	CMTM8--CMTM7	1	3	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	NO	53	96	0.07	0.04	0.0122	0.0365	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	LN340_CENTRAL_NERVOUS_SYSTEM	0.04	0.07	0.0487	FALSE	118	557	29	88	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	5	0	0.44	1	0.0122	0.0365	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN340_CENTRAL_NERVOUS_SYSTEM	0.44	1	0.0487	FALSE	164	806	69	479	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	1	2	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	83	1	0.03	0.0122	0.0244	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	LN340_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0366	FALSE	141	264	50	91	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	MIB1--YLPM1	1	1	MIB1	1167	chr18:19285084:+	YLPM1	58668	chr14:75295916:+	ONLY_REF_SPLICE	YES	1	92	0.67	0.02	0.0122	0.0122	MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1,YLPM1->YLP_motif_containing_1,chr14:75230069-75322244:+	LN340_CENTRAL_NERVOUS_SYSTEM	0.02	0.67	0.0244	TRUE	0	0	0	1	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0122	0.0122	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN340_CENTRAL_NERVOUS_SYSTEM	0.4	1	0.0244	FALSE	125	705	46	456	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	PPP1R12C--IFITM10	1	1	PPP1R12C	8950	chr19:55610152:-	IFITM10	21303	chr11:1769349:-	ONLY_REF_SPLICE	NO	149	351	0.01	0.01	0.0122	0.0122	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,IFITM10->chr11:1753640-1771821:-,interferon_induced_transmembrane_protein_10	LN340_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0244	FALSE	1	1	0	2	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	PSPH--DARS	1	1	PSPH	1467	chr7:56118831:-	DARS	16927	chr2:136741024:-	ONLY_REF_SPLICE	YES	210	268	0.01	0.01	0.0122	0.0122	PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase,DARS->aspartyl-tRNA_synthetase,chr2:136664247-136743670:-	LN340_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	RB1--ITM2B	1	1	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	132	2839	0.01	0	0.0122	0.0122	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	LN340_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0244	FALSE	53	73	8	19	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	SMAD3--GTSE1	1	1	SMAD3	13047	chr15:67462942:+	GTSE1	34586	chr22:46719087:+	ONLY_REF_SPLICE	YES	240	165	0.01	0.01	0.0122	0.0122	SMAD3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_3,chr15:67356101-67487533:+,GTSE1->G2_and_S-phase_expressed_1,chr22:46692638-46726707:+	LN340_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000634
LN340_CENTRAL_NERVOUS_SYSTEM	ZNF385D--PDE1C	1	1	ZNF385D	13625	chr3:21604754:-	PDE1C	38864	chr7:31920473:-	ONLY_REF_SPLICE	YES	16	64	0.11	0.03	0.0122	0.0122	ZNF385D->chr3:21459915-22414812:-,zinc_finger_protein_385D,PDE1C->chr7:31790793-32338941:-,phosphodiesterase_1C	LN340_CENTRAL_NERVOUS_SYSTEM	0.03	0.11	0.0244	TRUE	0	0	0	1	0	FALSE	ACH-000634
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOA6--SPDEF	146	70	NCOA6	10263	chr20:33356267:-	SPDEF	33635	chr6:34512261:-	ONLY_REF_SPLICE	YES	27	0	0.89	1	1.9752	0.947	NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6,SPDEF->SAM_pointed_domain_containing_ETS_transcription_factor,chr6:34505579-34524110:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	2.9222	TRUE	0	0	0	1	0	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	155	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.097	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.097	TRUE	0	0	0	518	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	137	50	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	48	110	0.8	0.63	1.8534	0.6764	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.8	2.5298	TRUE	181	1564	124	196	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	133	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.7993	0.2841	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	2.0834	TRUE	508	994	45	981	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	72	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.9741	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9741	TRUE	519	3926	326	965	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	68	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.92	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.92	FALSE	369	2501	205	193	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF277--LMO3	33	2	ZNF277	1220	chr7:111846862:+	LMO3	26693	chr12:16753802:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4464	0.0271	ZNF277->chr7:111846643-111983151:+,zinc_finger_protein_277,LMO3->LIM_domain_only_3,Oncogene{Bushman},chr12:16701307-16763528:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4735	TRUE	0	0	0	1	0	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--ERBB4	25	13	IKZF2	5217	chr2:214012432:-	ERBB4	30646	chr2:212989628:-	ONLY_REF_SPLICE	YES	43	0	0.47	1	0.3382	0.1759	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.5141	TRUE	0	1	0	2	1	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	21	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2841	0.0947	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3788	FALSE	499	1288	110	792	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	19	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	8	0.85	0.74	0.257	0.0541	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	0.85	0.3111	FALSE	16	356	14	466	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	16	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2165	0.0135	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.23	FALSE	416	2512	207	587	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	15	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2029	0.0271	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.23	TRUE	477	1352	189	275	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	37	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0812	0.5006	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5818	FALSE	369	2501	205	193	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	9	25	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1218	0.3382	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.46	FALSE	369	2501	205	193	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	30	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0812	0.4059	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4871	FALSE	369	2501	205	193	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	13	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1759	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1759	TRUE	0	0	0	518	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	9	14	AC104820.2	16783	chr2:182227645:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	14	213	0.62	0.1	0.1218	0.1894	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.62	0.3112	FALSE	0	0	0	16	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	12	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1623	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1623	FALSE	369	2501	205	193	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	10	1	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	10	255	0.52	0.04	0.1353	0.0135	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.52	0.1488	FALSE	0	1	0	18	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	6	8	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	14	255	0.5	0.05	0.0812	0.1082	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.5	0.1894	FALSE	0	0	0	19	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1082	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1082	FALSE	13	9	0	364	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1082	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1082	FALSE	13	9	0	364	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF277--LMO3	7	2	ZNF277	1220	chr7:111846862:+	LMO3	22727	chr12:16759066:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0947	0.0271	ZNF277->chr7:111846643-111983151:+,zinc_finger_protein_277,LMO3->LIM_domain_only_3,Oncogene{Bushman},chr12:16701307-16763528:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1218	TRUE	0	0	0	1	0	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0676	0.0947	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1623	FALSE	499	1288	110	792	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0676	0.0812	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1488	FALSE	499	1288	110	792	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	9	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0541	0.1218	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1759	FALSE	369	2501	205	193	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0812	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0812	FALSE	369	2501	205	193	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	6	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0812	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0812	TRUE	0	0	0	434	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0812	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0812	FALSE	292	1546	117	613	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	4	7	MT-ND5	2697	chrM:14033:+	MT-ND4	6140	chrM:11087:+	INCL_NON_REF_SPLICE	YES	382	11864	0.03	0	0.0541	0.0947	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.1488	FALSE	47	27	1	24	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0676	0.0271	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0947	FALSE	515	4851	409	746	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	3	9	MT-ND5	2826	chrM:14162:+	MT-ND4	6039	chrM:10986:+	INCL_NON_REF_SPLICE	YES	0	7118	1	0	0.0406	0.1218	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1624	FALSE	46	27	1	23	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	5	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0676	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0676	TRUE	0	5	1	24	1	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	3	8	MT-ND5	2705	chrM:14041:+	MT-ND4	5940	chrM:10887:+	INCL_NON_REF_SPLICE	YES	133	1906	0.08	0.01	0.0406	0.1082	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.08	0.1488	FALSE	29	25	1	23	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	3	6	MT-ND5	2247	chrM:13583:+	MT-ND4	6112	chrM:11059:+	INCL_NON_REF_SPLICE	YES	2605	10730	0	0	0.0406	0.0812	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1218	FALSE	47	29	1	24	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0541	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0541	FALSE	369	2501	205	193	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1028	chrM:5628:-	MT-TN	4115	chrM:5684:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0541	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0541	FALSE	369	2501	205	193	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	3	2	AC104820.2	7753	chr2:182103177:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	23	213	0.18	0.02	0.0406	0.0271	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.18	0.0677	FALSE	0	0	0	1	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0406	0.0271	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0677	FALSE	407	2205	196	549	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	3	1	AC104820.2	6553	chr2:182091262:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	10	213	0.29	0.02	0.0406	0.0135	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.29	0.0541	FALSE	0	0	0	11	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0406	FALSE	499	1288	110	792	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0406	FALSE	164	806	69	479	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0406	FALSE	125	705	46	456	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	2	4	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	YES	57	55	0.1	0.1	0.0271	0.0541	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.1	0.0812	TRUE	4	3	0	21	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	3	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0406	TRUE	62	24	1	171	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	3	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0406	TRUE	0	0	0	518	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--DAP3	3	0	ZNF738	7035	chr19:21558766:+	DAP3	28866	chr1:155708400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0406	TRUE	0	0	0	4	0	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0271	0.0271	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0542	FALSE	467	2173	244	435	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	2	1	AC104820.2	8902	chr2:182127704:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	30	255	0.09	0.01	0.0271	0.0135	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.09	0.0406	FALSE	0	0	0	11	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC079610.1	2	1	IKZF2	5217	chr2:214012432:-	AC079610.1	31142	chr2:213757533:-	ONLY_REF_SPLICE	YES	41	0	0.07	1	0.0271	0.0135	NEIGHBORS_OVERLAP:-:-:[21840],IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC079610.1->chr2:213446081-213886269:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0406	FALSE	0	1	0	1	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOA3--GRAP2	2	1	NCOA3	2242	chr20:46212005:+	GRAP2	36922	chr22:40361994:+	ONLY_REF_SPLICE	YES	12	148	0.2	0.02	0.0271	0.0135	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,GRAP2->GRB2-related_adaptor_protein_2,chr22:40297086-40369725:+	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.2	0.0406	TRUE	0	0	0	1	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOA6--SPDEF	2	1	NCOA6	10263	chr20:33356267:-	SPDEF	35100	chr6:34508958:-	ONLY_REF_SPLICE	YES	27	49	0.1	0.06	0.0271	0.0135	NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6,SPDEF->SAM_pointed_domain_containing_ETS_transcription_factor,chr6:34505579-34524110:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.1	0.0406	TRUE	0	0	0	1	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC079610.1--ERBB4	2	0	AC079610.1	4381	chr2:213757409:-	ERBB4	11194	chr2:212989628:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	NEIGHBORS[42516],AC079610.1->chr2:213446081-213886269:-,ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	FALSE	0	0	0	1	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATG4C--SNX1	2	0	ATG4C	1091	chr1:63249896:+	SNX1	20670	chr15:64404772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	ATG4C->autophagy_related_4C_cysteine_peptidase,chr1:63249806-63331184:+,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--PGBD2	2	0	CPSF6	11046	chr12:69656342:+	PGBD2	23586	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Adipose_-_Subcutaneous=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	7	0	6	2	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--U2AF1	2	0	RCC1	2920	chr1:28835417:+	U2AF1	29293	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	0	0	2	0	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RHOA--QRICH1	2	0	RHOA	2179	chr3:49449253:-	QRICH1	17997	chr3:49114471:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,QRICH1->chr3:49067140-49131796:-,glutamine_rich_1	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	2	0	4	0	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--ENO1	2	0	ZNF738	7035	chr19:21558766:+	ENO1	21893	chr1:8925541:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP11B--MCCC1	1	1	ATP11B	29693	chr3:182616560:+	MCCC1	49975	chr3:182804576:-	ONLY_REF_SPLICE	NO	130	48	0.02	0.04	0.0135	0.0135	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[93583],ATP11B->ATPase_phospholipid_transporting_11B_(putative),chr3:182511288-182639423:+,MCCC1->chr3:182733006-182833863:-,methylcrotonoyl-CoA_carboxylase_1	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC079610.1	1	1	IKZF2	5217	chr2:214012432:-	AC079610.1	30030	chr2:213761767:-	ONLY_REF_SPLICE	YES	41	0	0.05	1	0.0135	0.0135	NEIGHBORS_OVERLAP:-:-:[21840],IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC079610.1->chr2:213446081-213886269:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC079610.1	1	1	IKZF2	5217	chr2:214012432:-	AC079610.1	28967	chr2:213768167:-	ONLY_REF_SPLICE	YES	41	0	0.05	1	0.0135	0.0135	NEIGHBORS_OVERLAP:-:-:[21840],IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC079610.1->chr2:213446081-213886269:-	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG8--STK4	1	1	SNHG8	1429	chr4:119200292:+	STK4	11921	chr20:43607084:+	ONLY_REF_SPLICE	NO	166	149	0.01	0.01	0.0135	0.0135	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,STK4->Oncogene{Bushman},chr20:43595115-43708600:+,serine/threonine_kinase_4	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMA16--IRF2	1	1	TMA16	1363	chr4:164415956:+	IRF2	16490	chr4:185350224:-	ONLY_REF_SPLICE	NO	65	34	0.03	0.06	0.0135	0.0135	TMA16->chr4:164415594-164441691:+,translation_machinery_associated_16_homolog,IRF2->ArcherDX_panel,FoundationOne_panel,chr4:185308867-185395734:-,interferon_regulatory_factor_2	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.06	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAP1--UBAP2	1	1	UBAP1	1236	chr9:34179238:+	UBAP2	18122	chr9:33998862:-	ONLY_REF_SPLICE	NO	64	51	0.03	0.04	0.0135	0.0135	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000101
KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	31	0	0.06	1	0.0135	0.0135	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.027	FALSE	272	151	14	158	0	FALSE	ACH-000101
GP2D_LARGE_INTESTINE	RNASEH2A--ASNA1	481	230	RNASEH2A	1927	chr19:12918320:+	ASNA1	10789	chr19:12856191:+	ONLY_REF_SPLICE	YES	295	310	0.71	0.7	5.1256	2.4509	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[58257],RNASEH2A->chr19:12917394-12924452:+,ribonuclease_H2_subunit_A,ASNA1->arsA_arsenite_transporter,_ATP-binding,_homolog_1_(bacterial),chr19:12847953-12859137:+	GP2D_LARGE_INTESTINE	0.7	0.71	7.5765	TRUE	0	0	0	1	0	TRUE	ACH-000982
GP2D_LARGE_INTESTINE	CAPZB--TMCO4	78	47	CAPZB	5670	chr1:19746155:-	TMCO4	35881	chr1:20027378:-	ONLY_REF_SPLICE	YES	961	47	0.12	0.73	0.8312	0.5008	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,TMCO4->chr1:20008706-20126438:-,transmembrane_and_coiled-coil_domains_4	GP2D_LARGE_INTESTINE	0.12	0.73	1.332	TRUE	0	0	0	1	0	TRUE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ND1--MT-RNR2	41	3	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	NO	33	101	0.57	0.3	0.4369	0.032	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GP2D_LARGE_INTESTINE	0.3	0.57	0.4689	FALSE	92	22	4	61	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	TIMM23B--LINC00843	39	10	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4156	0.1066	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	GP2D_LARGE_INTESTINE	1	1	0.5222	TRUE	508	994	45	981	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	OR51S1--TP53I11	38	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4049	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	GP2D_LARGE_INTESTINE	1	1	0.4049	TRUE	402	216	10	229	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ND6--MT-ND5	30	2	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1404	1	0.02	0.3197	0.0213	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	GP2D_LARGE_INTESTINE	0.02	1	0.341	FALSE	101	855	57	72	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-TA--MT-TC	27	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2877	0.0852	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GP2D_LARGE_INTESTINE	1	1	0.3729	FALSE	462	80	0	856	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ND6--MT-TE	22	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2344	0.0213	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GP2D_LARGE_INTESTINE	1	1	0.2557	FALSE	499	1288	110	792	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	TIMM23--RP11-464F9.1	21	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	253	6	0.08	0.79	0.2238	0.0213	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	GP2D_LARGE_INTESTINE	0.08	0.79	0.2451	TRUE	519	3926	326	965	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	ATP6V0E1--FAM153B	16	21	ATP6V0E1	2256	chr5:172421825:+	FAM153B	14494	chr5:175501639:+	ONLY_REF_SPLICE	YES	251	3	0.13	0.93	0.1705	0.2238	ATP6V0E1->ATPase_H+_transporting_V0_subunit_e1,chr5:172410760-172462448:+,FAM153B->chr5:175487692-175559261:+,family_with_sequence_similarity_153_member_B	GP2D_LARGE_INTESTINE	0.13	0.93	0.3943	TRUE	0	0	0	1	0	TRUE	ACH-000982
GP2D_LARGE_INTESTINE	ATP6V0E1--FAM153B	16	9	ATP6V0E1	2256	chr5:172421825:+	FAM153B	20704	chr5:175520198:+	ONLY_REF_SPLICE	YES	251	8	0.09	0.76	0.1705	0.0959	ATP6V0E1->ATPase_H+_transporting_V0_subunit_e1,chr5:172410760-172462448:+,FAM153B->chr5:175487692-175559261:+,family_with_sequence_similarity_153_member_B	GP2D_LARGE_INTESTINE	0.09	0.76	0.2664	TRUE	0	0	0	1	0	TRUE	ACH-000982
GP2D_LARGE_INTESTINE	RP11-123O10.4--GRIP1	17	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1812	0.032	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	GP2D_LARGE_INTESTINE	1	1	0.2132	FALSE	416	2512	207	587	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ND6--MT-TE	14	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1492	0.0213	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GP2D_LARGE_INTESTINE	1	1	0.1705	FALSE	499	1288	110	792	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ND6--MT-TE	11	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1172	0.0426	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GP2D_LARGE_INTESTINE	1	1	0.1598	FALSE	499	1288	110	792	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1172	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	GP2D_LARGE_INTESTINE	1	1	0.1172	TRUE	0	0	0	434	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	HSP90AB1--MT-RNR2	10	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3084	0	0	1	0.1066	0.0213	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GP2D_LARGE_INTESTINE	0	1	0.1279	FALSE	13	9	0	364	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ND6--MT-ND5	8	2	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	2518	1	0	0.0852	0.0213	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	GP2D_LARGE_INTESTINE	0	1	0.1065	FALSE	101	855	57	72	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ATP6--MT-CO1	8	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0852	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GP2D_LARGE_INTESTINE	1	1	0.0852	FALSE	183	104	9	328	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ND6--MT-TE	6	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0.0746	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GP2D_LARGE_INTESTINE	1	1	0.1385	FALSE	499	1288	110	792	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	ATP6V0E1--FAM153B	2	21	ATP6V0E1	2256	chr5:172421825:+	FAM153B	11453	chr5:175490712:+	ONLY_REF_SPLICE	YES	251	0	0.08	1	0.0213	0.2238	ATP6V0E1->ATPase_H+_transporting_V0_subunit_e1,chr5:172410760-172462448:+,FAM153B->chr5:175487692-175559261:+,family_with_sequence_similarity_153_member_B	GP2D_LARGE_INTESTINE	0.08	1	0.2451	TRUE	0	0	0	1	0	TRUE	ACH-000982
GP2D_LARGE_INTESTINE	TPT1--H19	7	1	TPT1	1319	chr13:45915187:-	H19	11854	chr11:2017003:-	INCL_NON_REF_SPLICE	YES	3282	6166	0	0	0.0746	0.0107	TPT1->chr13:45911008-45915505:-,tumor_protein,_translationally-controlled_1,H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-	GP2D_LARGE_INTESTINE	0	0	0.0853	FALSE	0	0	0	4	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ATP6--MT-CO1	7	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0746	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GP2D_LARGE_INTESTINE	1	1	0.0746	FALSE	183	104	9	328	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ATP6--MT-CO1	7	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0746	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GP2D_LARGE_INTESTINE	1	1	0.0746	FALSE	183	104	9	328	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	HSP90AB1--MT-RNR2	6	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3064	0	0	1	0.0639	0.0213	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GP2D_LARGE_INTESTINE	0	1	0.0852	FALSE	13	9	0	364	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ND6--MT-ND5	6	2	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	1388	1	0.01	0.0639	0.0213	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	GP2D_LARGE_INTESTINE	0.01	1	0.0852	FALSE	101	855	57	72	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-TA--MT-TC	4	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0.1066	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GP2D_LARGE_INTESTINE	1	1	0.1492	FALSE	462	80	0	856	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	SLC25A46--CHSY3	6	1	SLC25A46	7616	chr5:110083964:+	CHSY3	24833	chr5:129519922:+	ONLY_REF_SPLICE	YES	39	0	0.15	1	0.0639	0.0107	SLC25A46->chr5:110073837-110100857:+,solute_carrier_family_25_member_46,CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+	GP2D_LARGE_INTESTINE	0.15	1	0.0746	TRUE	0	0	0	1	0	TRUE	ACH-000982
GP2D_LARGE_INTESTINE	CAPZB--TMCO4	1	20	CAPZB	5670	chr1:19746155:-	TMCO4	36999	chr1:20021044:-	ONLY_REF_SPLICE	NO	961	47	0.02	0.31	0.0107	0.2131	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,TMCO4->chr1:20008706-20126438:-,transmembrane_and_coiled-coil_domains_4	GP2D_LARGE_INTESTINE	0.02	0.31	0.2238	TRUE	0	0	0	1	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	FTH1--ACTG1	6	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	GP2D_LARGE_INTESTINE	1	1	0.0639	TRUE	0	0	0	64	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-TA--MT-TC	4	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0.0852	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GP2D_LARGE_INTESTINE	1	1	0.1278	FALSE	462	80	0	856	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	JSRP1--RPS28	5	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0533	0.0213	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	GP2D_LARGE_INTESTINE	0.88	1	0.0746	TRUE	0	1	0	84	1	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ND6--MT-TE	4	6	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0.0639	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GP2D_LARGE_INTESTINE	1	1	0.1065	FALSE	499	1288	110	792	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ATP6--MT-CO1	5	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GP2D_LARGE_INTESTINE	1	1	0.0533	FALSE	183	104	9	328	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ND6--MT-ND5	5	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	GP2D_LARGE_INTESTINE	1	1	0.0533	FALSE	101	855	57	72	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GP2D_LARGE_INTESTINE	1	1	0.0533	FALSE	499	1288	110	792	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-TA--MT-TC	3	8	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.0852	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GP2D_LARGE_INTESTINE	1	1	0.1172	FALSE	462	80	0	856	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0426	0.032	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GP2D_LARGE_INTESTINE	0.88	1	0.0746	FALSE	515	4851	409	746	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	ARID1A--RPS6KA1	4	2	ARID1A	7728	chr1:27059283:+	RPS6KA1	29142	chr1:26863416:+	ONLY_REF_SPLICE	YES	59	101	0.09	0.06	0.0426	0.0213	{Klijn_CCL:Stomach=1},ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,RPS6KA1->Oncogene{Bushman},chr1:26856252-26901521:+,ribosomal_protein_S6_kinase_A1	GP2D_LARGE_INTESTINE	0.06	0.09	0.0639	TRUE	0	0	0	1	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GP2D_LARGE_INTESTINE	1	1	0.0426	FALSE	183	104	9	328	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ATP6--MT-ND2	4	0	MT-ATP6	1140	chrM:8666:+	MT-ND2	5395	chrM:5183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	GP2D_LARGE_INTESTINE	1	1	0.0426	FALSE	177	96	13	17	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	3	MT-ATP6	1303	chrM:8829:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	11873	0	0	1	0.032	0.032	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GP2D_LARGE_INTESTINE	0	1	0.064	FALSE	182	97	9	327	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1462	chrM:8988:+	MT-CO1	5224	chrM:6446:+	INCL_NON_REF_SPLICE	YES	6062	20162	0	0	0.032	0.0213	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GP2D_LARGE_INTESTINE	0	0	0.0533	FALSE	183	104	9	328	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ND1--MT-RNR2	3	2	MT-ND1	1227	chrM:3533:+	MT-RNR2	5558	chrM:2272:+	INCL_NON_REF_SPLICE	YES	12	6572	0.29	0	0.032	0.0213	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GP2D_LARGE_INTESTINE	0	0.29	0.0533	FALSE	120	26	5	87	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ND1--MT-RNR2	3	2	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	12	6556	0.29	0	0.032	0.0213	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GP2D_LARGE_INTESTINE	0	0.29	0.0533	FALSE	120	26	5	87	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ND1--MT-RNR2	3	2	MT-ND1	1086	chrM:3392:+	MT-RNR2	5099	chrM:1813:+	INCL_NON_REF_SPLICE	NO	0	4489	1	0	0.032	0.0213	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GP2D_LARGE_INTESTINE	0	1	0.0533	FALSE	114	26	4	85	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1504	chrM:9030:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4663	22064	0	0	0.032	0.0107	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GP2D_LARGE_INTESTINE	0	0	0.0427	FALSE	183	104	9	328	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	20	0.8	0.17	0.032	0.0107	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	GP2D_LARGE_INTESTINE	0.17	0.8	0.0427	FALSE	16	356	14	466	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	RP11-155G15.2--RP11-1E3.1	3	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0.0107	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	GP2D_LARGE_INTESTINE	1	1	0.0427	FALSE	46	201	11	112	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GP2D_LARGE_INTESTINE	1	1	0.032	FALSE	182	97	9	327	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GP2D_LARGE_INTESTINE	1	1	0.032	FALSE	183	104	9	328	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ATP6--MT-ND2	3	0	MT-ATP6	1098	chrM:8624:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	GP2D_LARGE_INTESTINE	1	1	0.032	FALSE	177	96	13	17	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ATP6--MT-ND2	3	0	MT-ATP6	1108	chrM:8634:+	MT-ND2	5507	chrM:5295:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	GP2D_LARGE_INTESTINE	1	1	0.032	FALSE	177	96	13	17	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ATP6--MT-ND2	3	0	MT-ATP6	1136	chrM:8662:+	MT-ND2	5498	chrM:5286:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	GP2D_LARGE_INTESTINE	1	1	0.032	FALSE	177	96	13	17	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GP2D_LARGE_INTESTINE	1	1	0.032	FALSE	499	1288	110	792	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	RNF13--ATP2C1	2	0	RNF13	1646	chr3:149531140:+	ATP2C1	29245	chr3:130659474:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	RNF13->chr3:149530495-149679926:+,ring_finger_protein_13,ATP2C1->ATPase_secretory_pathway_Ca2+_transporting_1,chr3:130569439-130735556:+	GP2D_LARGE_INTESTINE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000982
GP2D_LARGE_INTESTINE	RP11-435O5.2--BTBD9	2	0	RP11-435O5.2	1073	chr9:98189006:-	BTBD9	19747	chr6:38256237:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	RP11-435O5.2->chr9:98177116-98189078:-,BTBD9->BTB_domain_containing_9,chr6:38136227-38607924:-	GP2D_LARGE_INTESTINE	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000982
GP2D_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0107	0.032	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GP2D_LARGE_INTESTINE	0.8	1	0.0427	FALSE	407	2205	196	549	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	ADAP1--SUN1	1	2	ADAP1	9672	chr7:959605:-	SUN1	24014	chr7:872142:+	ONLY_REF_SPLICE	YES	153	2	0.02	0.6	0.0107	0.0213	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	GP2D_LARGE_INTESTINE	0.02	0.6	0.032	TRUE	0	1	0	6	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	1	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0107	0.0213	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	GP2D_LARGE_INTESTINE	1	1	0.032	FALSE	81	155	12	160	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	DANCR--U2AF1	1	1	DANCR	1530	chr4:53579126:+	U2AF1	17709	chr21:44515853:-	ONLY_REF_SPLICE	NO	354	770	0.01	0	0.0107	0.0107	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	GP2D_LARGE_INTESTINE	0	0.01	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	MVP--DDX17	1	1	MVP	12039	chr16:29848279:+	DDX17	30168	chr22:38891051:-	ONLY_REF_SPLICE	YES	226	473	0.01	0	0.0107	0.0107	MVP->Oncogene{Bushman},chr16:29831715-29859355:+,major_vault_protein,DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-	GP2D_LARGE_INTESTINE	0	0.01	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	NPTN--EHD4	1	1	NPTN	2010	chr15:73925466:-	EHD4	23267	chr15:42211820:-	ONLY_REF_SPLICE	NO	144	69	0.01	0.03	0.0107	0.0107	NPTN->chr15:73852355-73926475:-,neuroplastin,EHD4->EH_domain_containing_4,chr15:42190950-42264776:-	GP2D_LARGE_INTESTINE	0.01	0.03	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	20	0.33	0.09	0.0107	0.0107	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	GP2D_LARGE_INTESTINE	0.09	0.33	0.0214	FALSE	0	48	1	163	0	FALSE	ACH-000982
GP2D_LARGE_INTESTINE	SAMD5--SASH1	1	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	5	2	0.29	0.5	0.0107	0.0107	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	GP2D_LARGE_INTESTINE	0.29	0.5	0.0214	TRUE	53	396	64	110	0	FALSE	ACH-000982
HCC2814_LUNG	ABCC1--C16orf45	185	191	ABCC1	38158	chr16:16232415:+	C16orf45	51377	chr16:15661840:+	ONLY_REF_SPLICE	YES	474	5	0.44	0.99	1.967	2.0308	ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,C16orf45->chr16:15528152-15718885:+,chromosome_16_open_reading_frame_45	HCC2814_LUNG	0.44	0.99	3.9978	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	FARS2--CDYL	82	39	FARS2	1617	chr6:5261893:+	CDYL	23182	chr6:4891947:+	ONLY_REF_SPLICE	YES	54	19	0.69	0.86	0.8719	0.4147	FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,CDYL->chr6:4706393-4955785:+,chromodomain_protein,_Y-like	HCC2814_LUNG	0.69	0.86	1.2866	TRUE	0	1	0	2	1	TRUE	ACH-000690
HCC2814_LUNG	TIMM23B--LINC00843	58	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6167	0.2552	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC2814_LUNG	1	1	0.8719	TRUE	508	994	45	981	0	FALSE	ACH-000690
HCC2814_LUNG	RP11-680G10.1--GSE1	54	13	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	68	1	0.5	0.5742	0.1382	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC2814_LUNG	0.5	1	0.7124	TRUE	465	1949	224	605	0	FALSE	ACH-000690
HCC2814_LUNG	AP003900.6--AC008132.1	47	6	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	5	0	0.91	1	0.4997	0.0638	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HCC2814_LUNG	0.91	1	0.5635	TRUE	0	0	0	25	0	FALSE	ACH-000690
HCC2814_LUNG	TIMM23--RP11-464F9.1	41	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	625	5	0.07	0.9	0.4359	0.0532	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC2814_LUNG	0.07	0.9	0.4891	TRUE	519	3926	326	965	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ND4L	3	113	MT-ND4	2303	chrM:12062:+	MT-ND4L	5383	chrM:10474:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0319	1.2015	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2814_LUNG	0.99	1	1.2334	FALSE	268	700	35	284	0	FALSE	ACH-000690
HCC2814_LUNG	AP003900.6--AC008132.1	23	28	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	10	0	0.84	1	0.2445	0.2977	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HCC2814_LUNG	0.84	1	0.5422	TRUE	1	1	0	28	1	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ND4L	4	93	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	54	1	0.64	0.99	0.0425	0.9888	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2814_LUNG	0.64	0.99	1.0313	FALSE	344	826	44	306	0	FALSE	ACH-000690
HCC2814_LUNG	MT-TA--MT-TC	23	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2445	0.0425	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2814_LUNG	1	1	0.287	FALSE	462	80	0	856	0	FALSE	ACH-000690
HCC2814_LUNG	NPM1P24--SET	20	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	62	3007	0.25	0.01	0.2126	0.0106	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2814_LUNG	0.01	0.25	0.2232	TRUE	0	0	0	434	0	FALSE	ACH-000690
HCC2814_LUNG	KANSL1--ARL17B	17	9	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	63	0	0.29	1	0.1808	0.0957	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC2814_LUNG	0.29	1	0.2765	TRUE	181	1564	124	196	0	FALSE	ACH-000690
HCC2814_LUNG	HSPBP1--GRK5	18	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1914	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HCC2814_LUNG	1	1	0.1914	TRUE	1	39	0	134	39	FALSE	ACH-000690
HCC2814_LUNG	ABCC1--C16orf45	10	27	ABCC1	36963	chr16:16230501:+	C16orf45	51377	chr16:15661840:+	ONLY_REF_SPLICE	YES	567	5	0.06	0.88	0.1063	0.2871	ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,C16orf45->chr16:15528152-15718885:+,chromosome_16_open_reading_frame_45	HCC2814_LUNG	0.06	0.88	0.3934	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	16	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15288	10	0	0.64	0.1701	0.0213	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	0.64	0.1914	FALSE	230	198	14	283	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	15	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15164	7	0	0.71	0.1595	0.0213	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	0.71	0.1808	FALSE	230	193	14	283	0	FALSE	ACH-000690
HCC2814_LUNG	RP11-680G10.1--GSE1	11	18	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	28	1	0.51	0.117	0.1914	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC2814_LUNG	0.51	1	0.3084	TRUE	458	1351	185	561	0	FALSE	ACH-000690
HCC2814_LUNG	TMEM206--RP11-438F14.3	11	14	TMEM206	10558	chr1:212548535:-	RP11-438F14.3	17096	chr1:248725901:+	ONLY_REF_SPLICE	YES	245	0	0.09	1	0.117	0.1489	TMEM206->chr1:212537273-212588243:-,transmembrane_protein_206,RP11-438F14.3->chr1:248712057-248727140:+	HCC2814_LUNG	0.09	1	0.2659	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ND4L	9	21	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1342	0	0.02	1	0.0957	0.2233	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2814_LUNG	0.02	1	0.319	FALSE	344	827	44	306	0	FALSE	ACH-000690
HCC2814_LUNG	UBE2B--TCF7	14	1	UBE2B	1461	chr5:133707330:+	TCF7	17377	chr5:133473750:+	ONLY_REF_SPLICE	YES	11	6	0.58	0.71	0.1489	0.0106	UBE2B->chr5:133706870-133727683:+,ubiquitin_conjugating_enzyme_E2_B,TCF7->chr5:133450402-133487556:+,transcription_factor_7_(T-cell_specific,_HMG-box)	HCC2814_LUNG	0.58	0.71	0.1595	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	13	4	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17880	10	0	0.63	0.1382	0.0425	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	0.63	0.1807	FALSE	231	205	14	283	0	FALSE	ACH-000690
HCC2814_LUNG	STK3--MYH15	12	7	STK3	29829	chr8:99538970:-	MYH15	39988	chr3:108229434:-	ONLY_REF_SPLICE	YES	199	0	0.09	1	0.1276	0.0744	STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,MYH15->chr3:108099216-108248169:-,myosin,_heavy_chain_15	HCC2814_LUNG	0.09	1	0.202	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ND4L	7	23	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2093	0	0.01	1	0.0744	0.2445	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2814_LUNG	0.01	1	0.3189	FALSE	344	827	44	306	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ND4L	3	32	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8353	0	0	1	0.0319	0.3402	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2814_LUNG	0	1	0.3721	FALSE	344	827	44	306	0	FALSE	ACH-000690
HCC2814_LUNG	C15orf57--CBX3	8	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	72	62	0.2	0.23	0.0851	0.1063	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC2814_LUNG	0.2	0.23	0.1914	TRUE	267	562	48	632	0	FALSE	ACH-000690
HCC2814_LUNG	SLC7A5--MT-ND4L	8	10	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	4248	0	0	1	0.0851	0.1063	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2814_LUNG	0	1	0.1914	FALSE	0	0	0	23	0	FALSE	ACH-000690
HCC2814_LUNG	TMEM206--RP11-438F14.3	7	14	TMEM206	10558	chr1:212548535:-	RP11-438F14.3	16013	chr1:248712065:+	INCL_NON_REF_SPLICE	YES	245	0	0.08	1	0.0744	0.1489	TMEM206->chr1:212537273-212588243:-,transmembrane_protein_206,RP11-438F14.3->chr1:248712057-248727140:+	HCC2814_LUNG	0.08	1	0.2233	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	CCSER1--MMRN1	9	5	CCSER1	10695	chr4:91389505:+	MMRN1	44504	chr4:90830427:+	ONLY_REF_SPLICE	YES	13	0	0.52	1	0.0957	0.0532	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	HCC2814_LUNG	0.52	1	0.1489	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	5	20	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2740	96	0.01	0.21	0.0532	0.2126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0.01	0.21	0.2658	FALSE	216	209	16	281	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	5	16	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	18854	1641	0	0.01	0.0532	0.1701	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	0.01	0.2233	FALSE	231	217	16	283	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	4	19	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	18673	0	0	1	0.0425	0.202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	1	0.2445	FALSE	231	217	16	283	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	4	19	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	19104	0	0	1	0.0425	0.202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	1	0.2445	FALSE	231	217	16	283	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ND4L	4	19	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	122	0	0.16	1	0.0425	0.202	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2814_LUNG	0.16	1	0.2445	FALSE	344	826	44	306	0	FALSE	ACH-000690
HCC2814_LUNG	NOTCH2NL--FLG-AS1	7	7	NOTCH2NL	1318	chr1:145209436:+	FLG-AS1	19610	chr1:152221371:+	ONLY_REF_SPLICE	YES	111	1	0.11	0.93	0.0744	0.0744	NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like,FLG-AS1->FLG_antisense_RNA_1,chr1:152140601-152339163:+	HCC2814_LUNG	0.11	0.93	0.1488	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	5	14	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	22378	0	0	1	0.0532	0.1489	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	1	0.2021	FALSE	231	217	16	283	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	4	18	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	19313	0	0	1	0.0425	0.1914	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	1	0.2339	FALSE	231	217	16	283	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	3	22	MT-ND4	2324	chrM:12083:+	MT-ATP8	5419	chrM:8406:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0319	0.2339	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0.96	1	0.2658	FALSE	209	205	15	279	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	5	14	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	22378	0	0	1	0.0532	0.1489	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	1	0.2021	FALSE	231	217	16	283	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	3	20	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15329	96	0	0.19	0.0319	0.2126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	0.19	0.2445	FALSE	231	217	16	283	0	FALSE	ACH-000690
HCC2814_LUNG	AP003900.6--AC008132.1	7	3	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	5	0	0.67	1	0.0744	0.0319	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HCC2814_LUNG	0.67	1	0.1063	TRUE	0	0	0	16	0	TRUE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	3	19	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	19374	0	0	1	0.0319	0.202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	1	0.2339	FALSE	231	217	16	283	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	3	19	MT-ND4	1776	chrM:11535:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	19328	0	0	1	0.0319	0.202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	1	0.2339	FALSE	231	217	16	283	0	FALSE	ACH-000690
HCC2814_LUNG	C15orf57--CBX3	5	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	72	62	0.17	0.19	0.0532	0.1063	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC2814_LUNG	0.17	0.19	0.1595	TRUE	267	562	48	632	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	3	18	MT-ND4	1756	chrM:11515:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	19083	0	0	1	0.0319	0.1914	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	1	0.2233	FALSE	231	217	16	283	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	4	14	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	22656	0	0	1	0.0425	0.1489	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	1	0.1914	FALSE	231	217	16	283	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	3	18	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19446	10	0	0.68	0.0319	0.1914	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	0.68	0.2233	FALSE	231	217	16	283	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	3	18	MT-ND4	1783	chrM:11542:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19443	96	0	0.18	0.0319	0.1914	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	0.18	0.2233	FALSE	231	217	16	283	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ATP6--MT-CO2	6	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	62	1	0.15	0.92	0.0638	0.0532	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2814_LUNG	0.15	0.92	0.117	FALSE	59	21	0	114	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	4	13	MT-ND4	1453	chrM:11212:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	22321	0	0	1	0.0425	0.1382	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	1	0.1807	FALSE	231	217	16	283	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	7	1	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	17580	1981	0	0	0.0744	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	0	0.085	FALSE	231	205	14	283	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	3	16	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	24469	788	0	0.02	0.0319	0.1701	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	0.02	0.202	FALSE	231	217	16	283	0	FALSE	ACH-000690
HCC2814_LUNG	RP11-123O10.4--GRIP1	6	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0638	0.0319	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC2814_LUNG	1	1	0.0957	FALSE	416	2512	207	587	0	FALSE	ACH-000690
HCC2814_LUNG	FTH1--ACTB	6	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	4331	5	0	0.62	0.0638	0.0213	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HCC2814_LUNG	0	0.62	0.0851	FALSE	1	0	0	97	0	FALSE	ACH-000690
HCC2814_LUNG	NPM1P24--SET	6	2	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	63	2716	0.11	0	0.0638	0.0213	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2814_LUNG	0	0.11	0.0851	FALSE	0	0	0	434	0	FALSE	ACH-000690
HCC2814_LUNG	MT-TA--MT-TC	5	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0532	0.0532	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2814_LUNG	1	1	0.1064	FALSE	462	80	0	856	0	FALSE	ACH-000690
HCC2814_LUNG	AC009234.1--MT-ND1	6	0	AC009234.1	1210	chr2:50816344:-	MT-ND1	4743	chrM:3323:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0638	0	AC009234.1->chr2:50815828-50816553:-,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC2814_LUNG	1	1	0.0638	FALSE	0	0	0	2	0	FALSE	ACH-000690
HCC2814_LUNG	AP003900.6--AC008132.1	2	16	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	10	0	0.64	1	0.0213	0.1701	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HCC2814_LUNG	0.64	1	0.1914	TRUE	0	0	0	11	0	TRUE	ACH-000690
HCC2814_LUNG	RP11-23D24.2--PLCH1	3	12	RP11-23D24.2	1333	chr3:153697643:-	PLCH1	45631	chr3:155093578:-	INCL_NON_REF_SPLICE	NO	11	0	0.58	1	0.0319	0.1276	RP11-23D24.2->chr3:153102723-153697975:-,PLCH1->chr3:155093369-155462856:-,phospholipase_C_eta_1	HCC2814_LUNG	0.58	1	0.1595	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	TXNRD1--RP11-818F20.4	6	0	TXNRD1	20839	chr12:104715094:+	RP11-818F20.4	36886	chr12:104571295:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0638	0	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	HCC2814_LUNG	1	1	0.0638	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	AP003900.6--AC008132.1	3	10	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	8	0	0.62	1	0.0319	0.1063	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HCC2814_LUNG	0.62	1	0.1382	TRUE	0	0	0	12	0	TRUE	ACH-000690
HCC2814_LUNG	FARS2--CDYL	5	2	FARS2	1315	chr6:5261591:+	CDYL	23182	chr6:4891947:+	ONLY_REF_SPLICE	YES	16	19	0.3	0.27	0.0532	0.0213	FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,CDYL->chr6:4706393-4955785:+,chromodomain_protein,_Y-like	HCC2814_LUNG	0.27	0.3	0.0745	TRUE	0	1	0	2	1	TRUE	ACH-000690
HCC2814_LUNG	MT-CO3--MT-ATP8	5	2	MT-CO3	1550	chrM:9756:+	MT-ATP8	4891	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11921	0	0	1	0.0532	0.0213	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	1	0.0745	FALSE	16	100	1	11	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ND4L	3	10	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	NO	107	0	0.11	1	0.0319	0.1063	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2814_LUNG	0.11	1	0.1382	FALSE	344	826	44	306	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ND4L	3	10	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	238	0	0.05	1	0.0319	0.1063	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2814_LUNG	0.05	1	0.1382	FALSE	344	827	44	306	0	FALSE	ACH-000690
HCC2814_LUNG	CDH13--RP11-22H5.2	5	1	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	67	0	0.08	1	0.0532	0.0106	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	HCC2814_LUNG	0.08	1	0.0638	FALSE	14	31	0	36	0	FALSE	ACH-000690
HCC2814_LUNG	IL1RAP--TP63	5	1	IL1RAP	11045	chr3:190282142:+	TP63	37326	chr3:189526061:+	ONLY_REF_SPLICE	YES	312	1997	0.02	0	0.0532	0.0106	IL1RAP->chr3:190231840-190375843:+,interleukin_1_receptor_accessory_protein,TP63->chr3:189349205-189615068:+,tumor_protein_p63	HCC2814_LUNG	0	0.02	0.0638	FALSE	0	0	0	1	0	FALSE	ACH-000690
HCC2814_LUNG	LAMP1--MCF2L	5	1	LAMP1	6155	chr13:113965182:+	MCF2L	54516	chr13:113732677:+	ONLY_REF_SPLICE	YES	1023	16	0.01	0.27	0.0532	0.0106	LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1,MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+	HCC2814_LUNG	0.01	0.27	0.0638	FALSE	0	0	0	1	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ATP6--MT-CO2	4	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	62	2	0.13	0.82	0.0425	0.0532	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2814_LUNG	0.13	0.82	0.0957	FALSE	59	21	0	114	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ATP6--MT-CO2	4	5	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	64	2	0.12	0.82	0.0425	0.0532	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2814_LUNG	0.12	0.82	0.0957	FALSE	59	21	0	114	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	5	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	16100	2055	0	0	0.0532	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	0	0.0638	FALSE	231	204	14	283	0	FALSE	ACH-000690
HCC2814_LUNG	ALDOA--KRT17	5	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0532	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	HCC2814_LUNG	1	1	0.0532	TRUE	0	0	0	10	0	TRUE	ACH-000690
HCC2814_LUNG	MT-ATP6--MT-CO2	4	4	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	63	1	0.11	0.89	0.0425	0.0425	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2814_LUNG	0.11	0.89	0.085	FALSE	59	21	0	114	0	FALSE	ACH-000690
HCC2814_LUNG	RP11-120D5.1--MID1	4	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	9	248	0.44	0.03	0.0425	0.0319	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC2814_LUNG	0.03	0.44	0.0744	FALSE	16	356	14	466	0	FALSE	ACH-000690
HCC2814_LUNG	ACOT9--APOO	4	2	ACOT9	5424	chrX:23761242:-	APOO	28354	chrX:23876850:-	ONLY_REF_SPLICE	YES	612	291	0.01	0.02	0.0425	0.0213	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[66878],ACOT9->acyl-CoA_thioesterase_9,chrX:23720370-23784592:-,APOO->apolipoprotein_O,chrX:23851470-23926057:-	HCC2814_LUNG	0.01	0.02	0.0638	FALSE	0	0	0	1	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15164	10	0	0.38	0.0425	0.0213	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	0.38	0.0638	FALSE	230	193	14	283	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	15309	96	0	0.06	0.0425	0.0213	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	0.06	0.0638	FALSE	230	198	14	283	0	FALSE	ACH-000690
HCC2814_LUNG	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0425	0.0213	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC2814_LUNG	1	1	0.0638	FALSE	515	4851	409	746	0	FALSE	ACH-000690
HCC2814_LUNG	AC024084.1--AC009784.3	4	0	AC024084.1	3174	chr7:135743253:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0425	0	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	HCC2814_LUNG	1	1	0.0425	FALSE	2	5	0	14	0	FALSE	ACH-000690
HCC2814_LUNG	AC024084.1--AC009784.3	4	0	AC024084.1	2134	chr7:135715781:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0425	0	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	HCC2814_LUNG	1	1	0.0425	FALSE	1	6	0	14	0	FALSE	ACH-000690
HCC2814_LUNG	MAEA--CTBP1	4	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0425	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HCC2814_LUNG	1	1	0.0425	TRUE	3	14	2	43	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ATP6--MT-CO2	3	4	MT-ATP6	1516	chrM:9042:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	5	4	0.58	0.64	0.0319	0.0425	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2814_LUNG	0.58	0.64	0.0744	FALSE	59	21	0	114	0	FALSE	ACH-000690
HCC2814_LUNG	MT-CO3--MT-ATP8	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP8	4817	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0425	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	1	1	0.0425	FALSE	16	100	1	11	0	FALSE	ACH-000690
HCC2814_LUNG	MT-CO3--MT-ATP8	4	0	MT-CO3	1123	chrM:9329:+	MT-ATP8	4843	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0425	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	1	1	0.0425	FALSE	16	100	1	11	0	FALSE	ACH-000690
HCC2814_LUNG	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0319	0.0319	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC2814_LUNG	1	1	0.0638	FALSE	407	2205	196	549	0	FALSE	ACH-000690
HCC2814_LUNG	SLC7A5--KRT6A	3	3	SLC7A5	7176	chr16:87872366:-	KRT6A	17581	chr12:52887041:-	INCL_NON_REF_SPLICE	YES	5585	0	0	1	0.0319	0.0319	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,KRT6A->chr12:52880958-52887041:-,keratin_6A	HCC2814_LUNG	0	1	0.0638	FALSE	0	0	0	2	0	FALSE	ACH-000690
HCC2814_LUNG	SLC7A5--KRT6A	3	3	SLC7A5	7177	chr16:87872365:-	KRT6A	17582	chr12:52887040:-	INCL_NON_REF_SPLICE	YES	5579	0	0	1	0.0319	0.0319	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,KRT6A->chr12:52880958-52887041:-,keratin_6A	HCC2814_LUNG	0	1	0.0638	FALSE	0	0	0	2	0	FALSE	ACH-000690
HCC2814_LUNG	FTH1--ACTB	3	2	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	4365	5	0	0.5	0.0319	0.0213	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HCC2814_LUNG	0	0.5	0.0532	FALSE	1	0	0	97	0	FALSE	ACH-000690
HCC2814_LUNG	MT-ATP6--MT-CO2	3	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	30	2	0.14	0.71	0.0319	0.0213	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2814_LUNG	0.14	0.71	0.0532	FALSE	59	21	0	114	0	FALSE	ACH-000690
HCC2814_LUNG	NPM1P24--SET	3	2	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	63	2718	0.07	0	0.0319	0.0213	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2814_LUNG	0	0.07	0.0532	FALSE	0	0	0	434	0	FALSE	ACH-000690
HCC2814_LUNG	AP003900.6--AC008132.1	2	5	AP003900.6	2187	chr21:11172043:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	NO	8	0	0.47	1	0.0213	0.0532	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HCC2814_LUNG	0.47	1	0.0745	TRUE	0	0	0	3	0	TRUE	ACH-000690
HCC2814_LUNG	MT-ATP6--MT-CO2	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	30	4	0.12	0.5	0.0319	0.0106	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2814_LUNG	0.12	0.5	0.0425	FALSE	59	21	0	114	0	FALSE	ACH-000690
HCC2814_LUNG	MT-CO3--MT-ATP8	3	1	MT-CO3	1140	chrM:9346:+	MT-ATP8	4859	chrM:8440:+	INCL_NON_REF_SPLICE	YES	5686	0	0	1	0.0319	0.0106	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2814_LUNG	0	1	0.0425	FALSE	16	100	1	11	0	FALSE	ACH-000690
HCC2814_LUNG	NPM1P24--SET	3	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	62	2517	0.06	0	0.0319	0.0106	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2814_LUNG	0	0.06	0.0425	FALSE	0	0	0	434	0	FALSE	ACH-000690
HCC2814_LUNG	RPS6KB1--VMP1	3	1	RPS6KB1	7326	chr17:57992064:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	163	636	0.02	0.01	0.0319	0.0106	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HCC2814_LUNG	0.01	0.02	0.0425	FALSE	0	8	0	9	5	FALSE	ACH-000690
HCC2814_LUNG	AC024084.1--AC009784.3	3	0	AC024084.1	3174	chr7:135743253:+	AC009784.3	8568	chr7:135801819:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0319	0	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	HCC2814_LUNG	1	1	0.0319	FALSE	0	1	0	3	0	FALSE	ACH-000690
HCC2814_LUNG	AP003900.6--AC008132.1	3	0	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0319	0	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HCC2814_LUNG	1	1	0.0319	TRUE	0	0	0	13	0	TRUE	ACH-000690
HCC2814_LUNG	EIF1--RPS28	3	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC2814_LUNG	1	1	0.0319	TRUE	0	0	0	81	0	FALSE	ACH-000690
HCC2814_LUNG	EIF1--RPS28	3	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC2814_LUNG	1	1	0.0319	TRUE	0	0	0	81	0	FALSE	ACH-000690
HCC2814_LUNG	EIF1--RPS28	3	0	EIF1	1121	chr17:39845257:+	RPS28	8168	chr19:8386425:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC2814_LUNG	1	1	0.0319	TRUE	0	0	0	81	0	FALSE	ACH-000690
HCC2814_LUNG	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	HCC2814_LUNG	1	1	0.0319	TRUE	22	156	2	142	0	FALSE	ACH-000690
HCC2814_LUNG	RP11-680G10.1--GSE1	2	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	174	1	0.03	0.0213	0.0425	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC2814_LUNG	0.03	1	0.0638	TRUE	64	13	3	59	0	FALSE	ACH-000690
HCC2814_LUNG	STOML1--LRP1B	3	0	STOML1	1072	chr15:74286892:-	LRP1B	97148	chr2:141110641:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0319	0	STOML1->chr15:74275547-74286963:-,stomatin_like_1,LRP1B->ArcherDX_panel,FoundationOne_panel,LDL_receptor_related_protein_1B,chr2:140988992-142889270:-	HCC2814_LUNG	1	1	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	TP63--TPRG1	3	0	TP63	4502	chr3:189507631:+	TPRG1	55724	chr3:189038415:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0319	0	TP63->chr3:189349205-189615068:+,tumor_protein_p63,TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1	HCC2814_LUNG	1	1	0.0319	TRUE	0	4	0	3	0	TRUE	ACH-000690
HCC2814_LUNG	TP63--TPRG1	3	0	TP63	5757	chr3:189526315:+	TPRG1	55724	chr3:189038415:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0319	0	TP63->chr3:189349205-189615068:+,tumor_protein_p63,TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1	HCC2814_LUNG	1	1	0.0319	TRUE	0	3	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	G3BP1--CTB-113P19.1	2	3	G3BP1	8817	chr5:151173810:+	CTB-113P19.1	32398	chr5:151104126:+	ONLY_REF_SPLICE	YES	569	0	0.01	1	0.0213	0.0319	LOCAL_REARRANGEMENT:+:[46263],G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-113P19.1->chr5:151056506-151104343:+	HCC2814_LUNG	0.01	1	0.0532	FALSE	0	0	0	1	0	FALSE	ACH-000690
HCC2814_LUNG	RP11-120D5.1--MID1	2	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	15	248	0.25	0.02	0.0213	0.0319	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC2814_LUNG	0.02	0.25	0.0532	FALSE	0	48	1	163	0	FALSE	ACH-000690
HCC2814_LUNG	CDH13--RP11-22H5.2	2	2	CDH13	5899	chr16:82738879:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	75	0	0.05	1	0.0213	0.0213	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	HCC2814_LUNG	0.05	1	0.0426	FALSE	0	1	0	4	0	FALSE	ACH-000690
HCC2814_LUNG	IMMP2L--DOCK4	2	2	IMMP2L	3872	chr7:111161369:-	DOCK4	20059	chr7:111644186:-	ONLY_REF_SPLICE	YES	33	3	0.11	0.57	0.0213	0.0213	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	HCC2814_LUNG	0.11	0.57	0.0426	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	RPS6KB1--VMP1	2	2	RPS6KB1	7326	chr17:57992064:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	163	387	0.02	0.01	0.0213	0.0213	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HCC2814_LUNG	0.01	0.02	0.0426	FALSE	0	4	0	3	2	FALSE	ACH-000690
HCC2814_LUNG	CTD-2337A12.1--CAST	2	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	211	1	0.01	0.0213	0.0106	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HCC2814_LUNG	0.01	1	0.0319	FALSE	347	1186	183	220	0	FALSE	ACH-000690
HCC2814_LUNG	GATS--PILRB	2	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	41	194	0.07	0.02	0.0213	0.0106	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	HCC2814_LUNG	0.02	0.07	0.0319	TRUE	57	41	2	35	0	FALSE	ACH-000690
HCC2814_LUNG	TBCA--AP3B1	2	1	TBCA	2304	chr5:77072029:-	AP3B1	40487	chr5:77335098:-	ONLY_REF_SPLICE	YES	433	166	0.01	0.02	0.0213	0.0106	TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	HCC2814_LUNG	0.01	0.02	0.0319	FALSE	0	0	0	1	0	FALSE	ACH-000690
HCC2814_LUNG	VAPB--GNAS	2	1	VAPB	1396	chr20:56964573:+	GNAS	36861	chr20:57470667:+	ONLY_REF_SPLICE	YES	118	929	0.02	0	0.0213	0.0106	VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HCC2814_LUNG	0	0.02	0.0319	FALSE	0	3	0	7	1	FALSE	ACH-000690
HCC2814_LUNG	AP003900.6--AC008132.1	2	0	AP003900.6	1122	chr21:11169841:+	AC008132.1	13301	chr22:18734614:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	C9orf3--SLC35D2	2	0	C9orf3	24370	chr9:97767898:+	SLC35D2	44622	chr9:99126832:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,SLC35D2->chr9:99082988-99145992:-,solute_carrier_family_35_member_D2	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	CIT--RAB35	2	0	CIT	10167	chr12:120260624:-	RAB35	57917	chr12:120541753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	CIT->chr12:120123595-120315095:-,citron_rho-interacting_serine/threonine_kinase,RAB35->RAB35,_member_RAS_oncogene_family,chr12:120532899-120555306:-	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	DISP1--DUSP10	2	0	DISP1	2077	chr1:222997287:+	DUSP10	21882	chr1:221913129:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	DISP1->chr1:222988406-223179337:+,dispatched_RND_transporter_family_member_1,DUSP10->Oncogene{Bushman},chr1:221874766-221915518:-,dual_specificity_phosphatase_10	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	EMC2--EIF3E	2	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	12	0	TRUE	ACH-000690
HCC2814_LUNG	ITGB4--CD151	2	0	ITGB4	8420	chr17:73728320:+	CD151	34231	chr11:836063:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	HGNC_GENEFAM,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4,CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	NRF1--AHCYL2	2	0	NRF1	1111	chr7:129251665:+	AHCYL2	29448	chr7:129019482:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	NRF1->Oncogene{Bushman},chr7:129251555-129396922:+,nuclear_respiratory_factor_1,AHCYL2->adenosylhomocysteinase_like_2,chr7:128864864-129070052:+	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	PARVB--CDK11A	2	0	PARVB	1463	chr22:44395553:+	CDK11A	33924	chr1:1654270:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	PARVB->Oncogene{Bushman},chr22:44395091-44568829:+,parvin_beta,CDK11A->Oncogene{Bushman},chr1:1634169-1655766:-,cyclin-dependent_kinase_11A	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	POU2F1--UCK2	2	0	POU2F1	1130	chr1:167190195:+	UCK2	44379	chr1:165859441:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	PTPRK--CENPW	2	0	PTPRK	7241	chr6:128643184:-	CENPW	54479	chr6:126667351:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,CENPW->centromere_protein_W,chr6:126661320-126670021:+	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	SLC25A13--ACN9	2	0	SLC25A13	4550	chr7:95906508:-	ACN9	28192	chr7:96810324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13,ACN9->chr7:96745902-96811075:+	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	TRIM13--DLEU2	2	0	TRIM13	2876	chr13:50571899:+	DLEU2	25015	chr13:50603628:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_INVERSION:+:-:[6652],TRIM13->chr13:50570024-50594617:+,tripartite_motif_containing_13,DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding)	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	UBE2V2--RP11-347C12.1	2	0	UBE2V2	1071	chr8:48921030:+	RP11-347C12.1	19107	chr16:30246900:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	UBE2V2->chr8:48920960-48977268:+,ubiquitin_conjugating_enzyme_E2_V2,RP11-347C12.1->chr16:30234258-30265831:-	HCC2814_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	AK2--PHC2	1	3	AK2	5299	chr1:33490043:-	PHC2	22005	chr1:33841194:-	ONLY_REF_SPLICE	YES	722	1	0.01	0.8	0.0106	0.0319	AK2->adenylate_kinase_2,chr1:33473585-33546597:-,PHC2->chr1:33789224-33896653:-,polyhomeotic_homolog_2	HCC2814_LUNG	0.01	0.8	0.0425	FALSE	0	0	0	1	0	FALSE	ACH-000690
HCC2814_LUNG	C7orf50--PRKAR1B	1	3	C7orf50	3078	chr7:1166893:-	PRKAR1B	19009	chr7:756483:-	ONLY_REF_SPLICE	YES	425	2	0.01	0.67	0.0106	0.0319	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	HCC2814_LUNG	0.01	0.67	0.0425	FALSE	0	0	0	1	0	FALSE	ACH-000690
HCC2814_LUNG	RP11-120D5.1--MID1	1	3	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	5	248	0.44	0.02	0.0106	0.0319	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC2814_LUNG	0.02	0.44	0.0425	FALSE	2	31	0	60	0	FALSE	ACH-000690
HCC2814_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0.0319	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC2814_LUNG	1	1	0.0425	FALSE	192	492	57	212	0	FALSE	ACH-000690
HCC2814_LUNG	CCAT1--CASC8	1	2	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	41	4	0.07	0.43	0.0106	0.0213	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC2814_LUNG	0.07	0.43	0.0319	TRUE	0	7	0	14	6	TRUE	ACH-000690
HCC2814_LUNG	CCAT1--CASC8	1	2	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	41	2	0.07	0.6	0.0106	0.0213	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC2814_LUNG	0.07	0.6	0.0319	TRUE	0	26	0	18	24	TRUE	ACH-000690
HCC2814_LUNG	SLC22A23--RP3-527G5.1	1	2	SLC22A23	8751	chr6:3410422:-	RP3-527G5.1	27859	chr6:4347103:-	ONLY_REF_SPLICE	YES	78	4	0.04	0.43	0.0106	0.0213	SLC22A23->Oncogene{Bushman},chr6:3269196-3457256:-,solute_carrier_family_22_member_23,RP3-527G5.1->chr6:4345977-4347271:-	HCC2814_LUNG	0.04	0.43	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	ABCC1--C16orf45	1	1	ABCC1	25239	chr16:16196574:+	C16orf45	51377	chr16:15661840:+	ONLY_REF_SPLICE	YES	510	5	0	0.29	0.0106	0.0106	ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,C16orf45->chr16:15528152-15718885:+,chromosome_16_open_reading_frame_45	HCC2814_LUNG	0	0.29	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000690
HCC2814_LUNG	ATXN7--THOC7	1	1	ATXN7	3640	chr3:63884173:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	YES	0	12	1	0.14	0.0106	0.0106	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	HCC2814_LUNG	0.14	1	0.0212	TRUE	0	2	0	5	2	TRUE	ACH-000690
HCC2814_LUNG	KTN1--EIF3M	1	1	KTN1	44662	chr14:56142636:+	EIF3M	59196	chr11:32610558:+	ONLY_REF_SPLICE	YES	853	2057	0	0	0.0106	0.0106	KTN1->Oncogene{Bushman},chr14:56025790-56168244:+,kinectin_1,EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M	HCC2814_LUNG	0	0	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000690
HCC2814_LUNG	MPP5--GPHN	1	1	MPP5	12732	chr14:67770316:+	GPHN	44271	chr14:67490350:+	ONLY_REF_SPLICE	YES	101	58	0.02	0.03	0.0106	0.0106	YOSHIHARA_TCGA_num_samples[BLCA:2|BRCA:1|LUAD:2],{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[59306],MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	HCC2814_LUNG	0.02	0.03	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000690
HCC2814_LUNG	MTMR3--IGSF9	1	1	MTMR3	18535	chr22:30414061:+	IGSF9	37763	chr1:159904612:-	ONLY_REF_SPLICE	YES	136	68	0.01	0.03	0.0106	0.0106	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,IGSF9->chr1:159896829-159915386:-,immunoglobulin_superfamily_member_9	HCC2814_LUNG	0.01	0.03	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000690
HCC2814_LUNG	PRRG4--EIF3M	1	1	PRRG4	3903	chr11:32860476:+	EIF3M	21892	chr11:32622235:+	ONLY_REF_SPLICE	NO	208	1555	0.01	0	0.0106	0.0106	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},PRRG4->chr11:32851489-32879669:+,proline_rich_and_Gla_domain_4,EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M	HCC2814_LUNG	0	0.01	0.0212	FALSE	0	1	0	1	1	FALSE	ACH-000690
HCC2814_LUNG	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0.0106	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC2814_LUNG	1	1	0.0212	FALSE	93	270	15	244	0	FALSE	ACH-000690
HCC2814_LUNG	RSRC2--FAM136A	1	1	RSRC2	4445	chr12:123006690:-	FAM136A	22886	chr2:70524609:-	ONLY_REF_SPLICE	YES	338	934	0.01	0	0.0106	0.0106	RSRC2->arginine/serine-rich_coiled-coil_2,chr12:122989190-123011547:-,FAM136A->chr2:70523107-70529222:-,family_with_sequence_similarity_136_member_A	HCC2814_LUNG	0	0.01	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000690
HCC2814_LUNG	SEC24B--MLLT10	1	1	SEC24B	5251	chr4:110394342:+	MLLT10	52978	chr10:22002701:+	ONLY_REF_SPLICE	NO	68	24	0.03	0.08	0.0106	0.0106	SEC24B->SEC24_homolog_B,_COPII_coat_complex_component,chr4:110354928-110462052:+,MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10	HCC2814_LUNG	0.03	0.08	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000690
HCC2814_LUNG	SLC22A23--RP1-223B1.1	1	1	SLC22A23	2117	chr6:3456140:-	RP1-223B1.1	29791	chr6:3594769:-	ONLY_REF_SPLICE	YES	44	0	0.04	1	0.0106	0.0106	SLC22A23->Oncogene{Bushman},chr6:3269196-3457256:-,solute_carrier_family_22_member_23,RP1-223B1.1->chr6:3594481-3624981:-	HCC2814_LUNG	0.04	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000690
HCC2814_LUNG	SUCO--STRBP	1	1	SUCO	7571	chr1:172526934:+	STRBP	39330	chr9:125936121:-	ONLY_REF_SPLICE	YES	83	200	0.02	0.01	0.0106	0.0106	SUCO->SUN_domain_containing_ossification_factor,chr1:172501489-172580971:+,STRBP->chr9:125871779-126030855:-,spermatid_perinuclear_RNA_binding_protein	HCC2814_LUNG	0.01	0.02	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000690
HCC2814_LUNG	TBCA--AP3B1	1	1	TBCA	4770	chr5:77004067:-	AP3B1	31917	chr5:77412058:-	ONLY_REF_SPLICE	YES	1453	130	0	0.02	0.0106	0.0106	TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	HCC2814_LUNG	0	0.02	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000690
HCC2814_LUNG	TXNRD1--CHST11	1	1	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	YES	2056	42	0	0.05	0.0106	0.0106	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	HCC2814_LUNG	0	0.05	0.0212	FALSE	0	2	1	13	2	FALSE	ACH-000690
SLR25_KIDNEY	NME7--SERPINC1	359	25	NME7	1260	chr1:169336946:-	SERPINC1	25143	chr1:173884057:-	ONLY_REF_SPLICE	YES	2	11	0.99	0.97	4.1428	0.2885	NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,SERPINC1->chr1:173872947-173886516:-,serpin_family_C_member_1	SLR25_KIDNEY	0.97	0.99	4.4313	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	IGSF3--GGT1	102	89	IGSF3	13001	chr1:117131316:-	GGT1	26899	chr22:25003921:+	ONLY_REF_SPLICE	YES	23	20	0.89	0.91	1.1771	1.027	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	SLR25_KIDNEY	0.89	0.91	2.2041	TRUE	1	1	0	8	1	TRUE	ACH-000300
SLR25_KIDNEY	EEF1D--CALR	106	1	EEF1D	17591	chr8:144662778:-	CALR	25466	chr19:13054680:+	INCL_NON_REF_SPLICE	YES	1468	1763	0.07	0.06	1.2232	0.0115	EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta,CALR->calreticulin,chr19:13049392-13055303:+	SLR25_KIDNEY	0.06	0.07	1.2347	TRUE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	LINC00152--AC093616.4	76	52	LINC00152	14196	chr2:87906288:+	AC093616.4	17233	chr2:88000503:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.877	0.6001	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	SLR25_KIDNEY	1	1	1.4771	FALSE	0	0	0	14	0	FALSE	ACH-000300
SLR25_KIDNEY	TIMM23B--LINC00843	74	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.854	0.277	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SLR25_KIDNEY	1	1	1.131	TRUE	508	994	45	981	0	FALSE	ACH-000300
SLR25_KIDNEY	UCK2--GPR161	58	51	UCK2	1402	chr1:165797169:+	GPR161	27367	chr1:168074132:-	ONLY_REF_SPLICE	YES	222	11	0.33	0.91	0.6693	0.5885	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,GPR161->G_protein-coupled_receptor_161,Oncogene{Bushman},chr1:168053997-168106821:-	SLR25_KIDNEY	0.33	0.91	1.2578	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	POU2F1--ILDR2	69	1	POU2F1	1130	chr1:167190195:+	ILDR2	44237	chr1:166927338:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.7963	0.0115	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ILDR2->chr1:166882443-166944719:-,immunoglobulin_like_domain_containing_receptor_2	SLR25_KIDNEY	1	1	0.8078	TRUE	0	0	0	2	0	TRUE	ACH-000300
SLR25_KIDNEY	NME7--SERPINC1	47	27	NME7	1260	chr1:169336946:-	SERPINC1	24876	chr1:173884324:-	ONLY_REF_SPLICE	YES	2	0	0.97	1	0.5424	0.3116	NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,SERPINC1->chr1:173872947-173886516:-,serpin_family_C_member_1	SLR25_KIDNEY	0.97	1	0.854	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	POU2F1--ASTN1	46	2	POU2F1	1130	chr1:167190195:+	ASTN1	56031	chr1:176934373:-	ONLY_REF_SPLICE	YES	0	4	1	0.92	0.5308	0.0231	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ASTN1->astrotactin_1,chr1:176826438-177134109:-	SLR25_KIDNEY	0.92	1	0.5539	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	TIMM23--RP11-464F9.1	44	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	287	4	0.14	0.92	0.5078	0.0115	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SLR25_KIDNEY	0.14	0.92	0.5193	TRUE	519	3926	326	965	0	FALSE	ACH-000300
SLR25_KIDNEY	AP000525.9--LA16c-60G3.6	42	5	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	24	0	0.66	1	0.4847	0.0577	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SLR25_KIDNEY	0.66	1	0.5424	TRUE	0	42	0	133	42	FALSE	ACH-000300
SLR25_KIDNEY	AL589743.1--RP11-536C10.17	42	4	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	22	0	0.68	1	0.4847	0.0462	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	SLR25_KIDNEY	0.68	1	0.5309	TRUE	0	33	0	45	33	FALSE	ACH-000300
SLR25_KIDNEY	MT-TA--MT-TC	41	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4731	0.0808	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR25_KIDNEY	1	1	0.5539	FALSE	462	80	0	856	0	FALSE	ACH-000300
SLR25_KIDNEY	UCK2--GPR161	29	54	UCK2	1402	chr1:165797169:+	GPR161	26238	chr1:168083787:-	ONLY_REF_SPLICE	YES	222	4	0.27	0.95	0.3347	0.6232	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,GPR161->G_protein-coupled_receptor_161,Oncogene{Bushman},chr1:168053997-168106821:-	SLR25_KIDNEY	0.27	0.95	0.9579	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	IGSF3--GGT1	17	80	IGSF3	13000	chr1:117131317:-	GGT1	26901	chr22:25003923:+	INCL_NON_REF_SPLICE	YES	23	20	0.81	0.83	0.1962	0.9232	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	SLR25_KIDNEY	0.81	0.83	1.1194	TRUE	1	1	0	8	1	TRUE	ACH-000300
SLR25_KIDNEY	NRIP1--AF127936.7	30	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	2	0.85	0.94	0.3462	0.0462	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR25_KIDNEY	0.85	0.94	0.3924	FALSE	292	1546	117	613	0	FALSE	ACH-000300
SLR25_KIDNEY	MGST3--ASTN1	27	2	MGST3	1433	chr1:165600530:+	ASTN1	25906	chr1:176993868:-	ONLY_REF_SPLICE	YES	19	0	0.6	1	0.3116	0.0231	MGST3->chr1:165600098-165631033:+,microsomal_glutathione_S-transferase_3,ASTN1->astrotactin_1,chr1:176826438-177134109:-	SLR25_KIDNEY	0.6	1	0.3347	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	27	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	14258	4	0	0.88	0.3116	0.0231	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	0.88	0.3347	FALSE	230	193	14	283	0	FALSE	ACH-000300
SLR25_KIDNEY	RP11-123O10.4--GRIP1	23	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.2654	0.0462	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SLR25_KIDNEY	0.96	1	0.3116	FALSE	416	2512	207	587	0	FALSE	ACH-000300
SLR25_KIDNEY	NME7--SERPINC1	16	28	NME7	1260	chr1:169336946:-	SERPINC1	23713	chr1:173886519:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.1846	0.3231	NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,SERPINC1->chr1:173872947-173886516:-,serpin_family_C_member_1	SLR25_KIDNEY	0.96	1	0.5077	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	ZNF654--HMGB2	22	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2539	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SLR25_KIDNEY	1	1	0.2539	TRUE	0	0	0	518	0	FALSE	ACH-000300
SLR25_KIDNEY	RFWD2--UCK2	19	7	RFWD2	3205	chr1:176153769:-	UCK2	30123	chr1:165860463:+	ONLY_REF_SPLICE	YES	45	353	0.37	0.07	0.2193	0.0808	RFWD2->chr1:175913967-176176629:-,ring_finger_and_WD_repeat_domain_2,UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2	SLR25_KIDNEY	0.07	0.37	0.3001	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	OR51S1--TP53I11	19	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2193	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SLR25_KIDNEY	1	1	0.2193	TRUE	402	216	10	229	0	FALSE	ACH-000300
SLR25_KIDNEY	NME7--SERPINC1	13	23	NME7	1260	chr1:169336946:-	SERPINC1	25147	chr1:173884053:-	INCL_NON_REF_SPLICE	YES	2	11	0.95	0.77	0.15	0.2654	NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,SERPINC1->chr1:173872947-173886516:-,serpin_family_C_member_1	SLR25_KIDNEY	0.77	0.95	0.4154	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	MT-ATP6--MT-CO1	18	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10278	26593	0	0	0.2077	0.0231	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SLR25_KIDNEY	0	0	0.2308	FALSE	183	104	9	328	0	FALSE	ACH-000300
SLR25_KIDNEY	NRIP1--AF127936.7	15	13	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	33	2	0.46	0.93	0.1731	0.15	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR25_KIDNEY	0.46	0.93	0.3231	FALSE	125	705	46	456	0	FALSE	ACH-000300
SLR25_KIDNEY	UCK2--GPR161	3	58	UCK2	1402	chr1:165797169:+	GPR161	22942	chr1:168104274:-	ONLY_REF_SPLICE	YES	222	1	0.22	0.98	0.0346	0.6693	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,GPR161->G_protein-coupled_receptor_161,Oncogene{Bushman},chr1:168053997-168106821:-	SLR25_KIDNEY	0.22	0.98	0.7039	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	PLXDC1--TAF13	17	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1962	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SLR25_KIDNEY	1	1	0.1962	TRUE	7	10	0	216	0	FALSE	ACH-000300
SLR25_KIDNEY	CTD-2008L17.1--RP11-456O19.2	13	13	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.15	0.15	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SLR25_KIDNEY	0.96	1	0.3	FALSE	20	187	4	79	0	FALSE	ACH-000300
SLR25_KIDNEY	RP11-680G10.1--GSE1	14	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	45	1	0.33	0.1616	0.0923	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SLR25_KIDNEY	0.33	1	0.2539	TRUE	465	1949	224	605	0	FALSE	ACH-000300
SLR25_KIDNEY	RP11-120D5.1--MID1	13	11	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	9	57	0.73	0.3	0.15	0.1269	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SLR25_KIDNEY	0.3	0.73	0.2769	FALSE	16	356	14	466	0	FALSE	ACH-000300
SLR25_KIDNEY	RRN3--NPIPP1	14	7	RRN3	2472	chr16:15186366:-	NPIPP1	37894	chr16:15198615:-	ONLY_REF_SPLICE	YES	178	37	0.11	0.36	0.1616	0.0808	LOCAL_REARRANGEMENT:-:[10004],RRN3->RRN3_homolog,_RNA_polymerase_I_transcription_factor,chr16:15153879-15188174:-,NPIPP1->chr16:15198178-15225458:-,nuclear_pore_complex_interacting_protein_pseudogene_1	SLR25_KIDNEY	0.11	0.36	0.2424	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	UCK2--GPR161	2	55	UCK2	1402	chr1:165797169:+	GPR161	24057	chr1:168103159:-	ONLY_REF_SPLICE	YES	222	1	0.2	0.98	0.0231	0.6347	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,GPR161->G_protein-coupled_receptor_161,Oncogene{Bushman},chr1:168053997-168106821:-	SLR25_KIDNEY	0.2	0.98	0.6578	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	14	4	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16994	8	0	0.69	0.1616	0.0462	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	0.69	0.2078	FALSE	231	205	14	283	0	FALSE	ACH-000300
SLR25_KIDNEY	HSP90AB1--MT-RNR2	14	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1616	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SLR25_KIDNEY	1	1	0.1616	FALSE	13	9	0	364	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-CO1--MT-RNR2	12	8	MT-CO1	1653	chrM:6556:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	26904	0	0	1	0.1385	0.0923	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SLR25_KIDNEY	0	1	0.2308	FALSE	44	51	6	21	0	FALSE	ACH-000300
SLR25_KIDNEY	COL8A1--CMSS1	7	26	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	284	552	0.1	0.06	0.0808	0.3	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SLR25_KIDNEY	0.06	0.1	0.3808	FALSE	76	19	3	26	0	FALSE	ACH-000300
SLR25_KIDNEY	EHD1--PPP2R5B	11	10	EHD1	6099	chr11:64641893:-	PPP2R5B	18634	chr11:64690461:+	INCL_NON_REF_SPLICE	YES	297	3	0.07	0.88	0.1269	0.1154	LOCAL_INVERSION:-:+:[29257],EHD1->EH_domain_containing_1,chr11:64619114-64655768:-,PPP2R5B->chr11:64685025-64701945:+,protein_phosphatase_2_regulatory_subunit_B',_beta	SLR25_KIDNEY	0.07	0.88	0.2423	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	10	11	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20766	0	0	1	0.1154	0.1269	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	1	0.2423	FALSE	231	217	16	283	0	FALSE	ACH-000300
SLR25_KIDNEY	WWC1--DNAJC19	11	7	WWC1	20439	chr5:167858449:+	DNAJC19	37397	chr3:180706017:-	ONLY_REF_SPLICE	YES	318	257	0.05	0.07	0.1269	0.0808	WWC1->WW_and_C2_domain_containing_1,chr5:167718656-167899308:+,DNAJC19->DnaJ_heat_shock_protein_family_(Hsp40)_member_C19,chr3:180701497-180707562:-	SLR25_KIDNEY	0.05	0.07	0.2077	TRUE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	C15orf57--CBX3	10	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	44	61	0.31	0.25	0.1154	0.1154	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SLR25_KIDNEY	0.25	0.31	0.2308	TRUE	267	562	48	632	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	12	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14385	8	0	0.64	0.1385	0.0231	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	0.64	0.1616	FALSE	230	198	14	283	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ATP6--MT-CO1	11	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	10138	25618	0	0	0.1269	0.0231	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SLR25_KIDNEY	0	0	0.15	FALSE	183	104	9	328	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-CO1--MT-RNR2	11	2	MT-CO1	1603	chrM:6506:+	MT-RNR2	5550	chrM:1678:+	INCL_NON_REF_SPLICE	YES	22055	0	0	1	0.1269	0.0231	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SLR25_KIDNEY	0	1	0.15	FALSE	44	51	6	21	0	FALSE	ACH-000300
SLR25_KIDNEY	DNM3--PAPPA2	9	9	DNM3	17413	chr1:172100428:+	PAPPA2	69515	chr1:176809309:+	ONLY_REF_SPLICE	YES	1	2	0.95	0.9	0.1039	0.1039	DNM3->chr1:171810621-172387606:+,dynamin_3,PAPPA2->Oncogene{Bushman},chr1:176432307-176814735:+,pappalysin_2	SLR25_KIDNEY	0.9	0.95	0.2078	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	SHISA9--U91319.1	11	1	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	7	0	0.63	1	0.1269	0.0115	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	SLR25_KIDNEY	0.63	1	0.1384	FALSE	4	37	0	19	0	FALSE	ACH-000300
SLR25_KIDNEY	NME7--SERPINC1	4	26	NME7	1260	chr1:169336946:-	SERPINC1	24947	chr1:173884253:-	INCL_NON_REF_SPLICE	YES	2	2	0.94	0.94	0.0462	0.3	NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,SERPINC1->chr1:173872947-173886516:-,serpin_family_C_member_1	SLR25_KIDNEY	0.94	0.94	0.3462	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	6	16	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17903	61	0	0.27	0.0692	0.1846	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	0.27	0.2538	FALSE	231	217	16	283	0	FALSE	ACH-000300
SLR25_KIDNEY	RP11-275N1.1--NEBL	10	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1154	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	SLR25_KIDNEY	1	1	0.1154	TRUE	0	0	0	21	0	FALSE	ACH-000300
SLR25_KIDNEY	RP11-680G10.1--GSE1	7	11	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	11	1	0.62	0.0808	0.1269	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SLR25_KIDNEY	0.62	1	0.2077	TRUE	458	1351	185	561	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ATP6--MT-CO2	8	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	52	9	0.2	0.59	0.0923	0.0577	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SLR25_KIDNEY	0.2	0.59	0.15	FALSE	59	21	0	114	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	5	17	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	18851	0	0	1	0.0577	0.1962	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	1	0.2539	FALSE	231	217	16	283	0	FALSE	ACH-000300
SLR25_KIDNEY	TMCO3--HYDIN	8	5	TMCO3	1279	chr13:114145588:+	HYDIN	65627	chr16:71004662:-	ONLY_REF_SPLICE	YES	253	0	0.05	1	0.0923	0.0577	TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SLR25_KIDNEY	0.05	1	0.15	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	5	16	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	18542	0	0	1	0.0577	0.1846	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	1	0.2423	FALSE	231	217	16	283	0	FALSE	ACH-000300
SLR25_KIDNEY	CHSY3--HSPA8P4	8	3	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	24	0	0.31	1	0.0923	0.0346	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	SLR25_KIDNEY	0.31	1	0.1269	FALSE	89	26	1	44	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	6	11	MT-ND4	1478	chrM:11237:+	MT-ATP8	5425	chrM:8412:+	INCL_NON_REF_SPLICE	YES	20866	0	0	1	0.0692	0.1269	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	1	0.1961	FALSE	231	217	16	283	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	4	19	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	18679	0	0	1	0.0462	0.2193	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	1	0.2655	FALSE	231	217	16	283	0	FALSE	ACH-000300
SLR25_KIDNEY	RP11-275N1.1--NEBL	7	7	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	11	4	0.56	0.78	0.0808	0.0808	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	SLR25_KIDNEY	0.56	0.78	0.1616	TRUE	0	2	0	25	2	FALSE	ACH-000300
SLR25_KIDNEY	HYDIN--TRPM1	8	2	HYDIN	46208	chr16:71004504:-	TRPM1	119139	chr15:31355495:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0923	0.0231	HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-,TRPM1->Oncogene{Bushman},chr15:31293264-31453476:-,transient_receptor_potential_cation_channel_subfamily_M_member_1	SLR25_KIDNEY	1	1	0.1154	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	MT-CO1--MT-RNR2	7	6	MT-CO1	1642	chrM:6545:+	MT-RNR2	5587	chrM:1715:+	INCL_NON_REF_SPLICE	YES	25882	0	0	1	0.0808	0.0692	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SLR25_KIDNEY	0	1	0.15	FALSE	44	51	6	21	0	FALSE	ACH-000300
SLR25_KIDNEY	C15orf57--CBX3	6	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	43	61	0.26	0.2	0.0692	0.1039	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SLR25_KIDNEY	0.2	0.26	0.1731	TRUE	267	562	48	632	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-CO1--MT-RNR2	7	5	MT-CO1	1635	chrM:6538:+	MT-RNR2	5554	chrM:1682:+	INCL_NON_REF_SPLICE	YES	25211	0	0	1	0.0808	0.0577	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SLR25_KIDNEY	0	1	0.1385	FALSE	44	51	6	21	0	FALSE	ACH-000300
SLR25_KIDNEY	NPM1P24--SET	8	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0923	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SLR25_KIDNEY	1	1	0.0923	TRUE	0	0	0	434	0	FALSE	ACH-000300
SLR25_KIDNEY	SLC7A5--MT-ND4L	7	4	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1395	0	0.01	1	0.0808	0.0462	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SLR25_KIDNEY	0.01	1	0.127	FALSE	0	0	0	23	0	FALSE	ACH-000300
SLR25_KIDNEY	EHD1--PPP2R5B	5	11	EHD1	6099	chr11:64641893:-	PPP2R5B	18630	chr11:64690457:+	ONLY_REF_SPLICE	YES	297	3	0.05	0.84	0.0577	0.1269	LOCAL_INVERSION:-:+:[29257],EHD1->EH_domain_containing_1,chr11:64619114-64655768:-,PPP2R5B->chr11:64685025-64701945:+,protein_phosphatase_2_regulatory_subunit_B',_beta	SLR25_KIDNEY	0.05	0.84	0.1846	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	4	15	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19083	8	0	0.7	0.0462	0.1731	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	0.7	0.2193	FALSE	231	217	16	283	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-TA--MT-TC	6	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0692	0.0808	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR25_KIDNEY	1	1	0.15	FALSE	462	80	0	856	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	3	18	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16760	61	0	0.26	0.0346	0.2077	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	0.26	0.2423	FALSE	231	217	16	283	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	3	18	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16042	61	0	0.26	0.0346	0.2077	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	0.26	0.2423	FALSE	231	215	16	283	0	FALSE	ACH-000300
SLR25_KIDNEY	AP000525.9--LA16c-60G3.6	7	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	24	0	0.25	1	0.0808	0.0115	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SLR25_KIDNEY	0.25	1	0.0923	TRUE	0	5	0	18	5	TRUE	ACH-000300
SLR25_KIDNEY	C6orf99--SYTL3	6	5	C6orf99	2468	chr6:159294653:+	SYTL3	16254	chr6:159128262:+	ONLY_REF_SPLICE	YES	20	6	0.35	0.65	0.0692	0.0577	C6orf99->chr6:159290971-159331385:+,chromosome_6_open_reading_frame_99,SYTL3->chr6:159071046-159185908:+,synaptotagmin_like_3	SLR25_KIDNEY	0.35	0.65	0.1269	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	NME7--SERPINC1	7	1	NME7	1260	chr1:169336946:-	SERPINC1	26510	chr1:173881152:-	ONLY_REF_SPLICE	YES	2	113	0.8	0.07	0.0808	0.0115	NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,SERPINC1->chr1:173872947-173886516:-,serpin_family_C_member_1	SLR25_KIDNEY	0.07	0.8	0.0923	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	CALM3--MT-ND4L	7	0	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0808	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SLR25_KIDNEY	1	1	0.0808	FALSE	1	1	0	107	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND6--MT-TE	7	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0808	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR25_KIDNEY	1	1	0.0808	FALSE	499	1288	110	792	0	FALSE	ACH-000300
SLR25_KIDNEY	SEPT11--CCNG2	7	0	SEPT11	1228	chr4:77871083:+	CCNG2	30949	chr4:78079686:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0808	0	SEPT11->chr4:77870856-77961537:+,septin_11,CCNG2->chr4:78078304-78354542:+,cyclin_G2	SLR25_KIDNEY	1	1	0.0808	TRUE	0	1	0	4	1	TRUE	ACH-000300
SLR25_KIDNEY	MT-ATP6--MT-CO2	5	7	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	51	8	0.19	0.6	0.0577	0.0808	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SLR25_KIDNEY	0.19	0.6	0.1385	FALSE	59	21	0	114	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-CO1--MT-RNR2	6	3	MT-CO1	1642	chrM:6545:+	MT-RNR2	6082	chrM:2210:+	INCL_NON_REF_SPLICE	YES	25882	7759	0	0	0.0692	0.0346	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SLR25_KIDNEY	0	0	0.1038	FALSE	44	51	6	21	0	FALSE	ACH-000300
SLR25_KIDNEY	SFT2D2--DNM3	5	7	SFT2D2	8585	chr1:168212307:+	DNM3	33781	chr1:172037959:+	INCL_NON_REF_SPLICE	YES	22	2	0.35	0.86	0.0577	0.0808	SFT2D2->SFT2_domain_containing_2,chr1:168195176-168222263:+,DNM3->chr1:171810621-172387606:+,dynamin_3	SLR25_KIDNEY	0.35	0.86	0.1385	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	4	10	MT-ND4	1521	chrM:11280:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	22691	526	0	0.03	0.0462	0.1154	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	0.03	0.1616	FALSE	231	217	16	283	0	FALSE	ACH-000300
SLR25_KIDNEY	RP11-120D5.1--MID1	5	6	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	11	57	0.5	0.16	0.0577	0.0692	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SLR25_KIDNEY	0.16	0.5	0.1269	FALSE	0	48	1	163	0	FALSE	ACH-000300
SLR25_KIDNEY	RP5-1070A16.1--SNX7	6	2	RP5-1070A16.1	2165	chr1:98715102:+	SNX7	11398	chr1:99150441:+	ONLY_REF_SPLICE	YES	4	96	0.67	0.08	0.0692	0.0231	RP5-1070A16.1->chr1:98676303-98738214:+,SNX7->chr1:99127236-99226056:+,sorting_nexin_7	SLR25_KIDNEY	0.08	0.67	0.0923	TRUE	0	2	0	2	2	TRUE	ACH-000300
SLR25_KIDNEY	LINC00152--AC093616.4	4	9	LINC00152	1278	chr2:87755164:+	AC093616.4	17233	chr2:88000503:+	ONLY_REF_SPLICE	YES	593	0	0.02	1	0.0462	0.1039	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	SLR25_KIDNEY	0.02	1	0.1501	FALSE	0	0	0	11	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0692	0.0115	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR25_KIDNEY	1	1	0.0807	FALSE	462	80	0	856	0	FALSE	ACH-000300
SLR25_KIDNEY	POU2F1--ILDR2	6	1	POU2F1	1130	chr1:167190195:+	ILDR2	43142	chr1:166944554:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0692	0.0115	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ILDR2->chr1:166882443-166944719:-,immunoglobulin_like_domain_containing_receptor_2	SLR25_KIDNEY	1	1	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	AGAP1--AC079135.1	3	12	AGAP1	19268	chr2:236839567:+	AC079135.1	41120	chr2:237122306:+	ONLY_REF_SPLICE	YES	83	0	0.15	1	0.0346	0.1385	NEIGHBORS[35646],AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,AC079135.1->chr2:237076090-237203570:+	SLR25_KIDNEY	0.15	1	0.1731	FALSE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-CO2	6	0	MT-ND4	1220	chrM:10979:+	MT-CO2	5458	chrM:7665:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0692	0	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SLR25_KIDNEY	1	1	0.0692	FALSE	5	1	0	19	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND6--MT-TE	4	8	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.0462	0.0923	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR25_KIDNEY	0.86	1	0.1385	FALSE	499	1288	110	792	0	FALSE	ACH-000300
SLR25_KIDNEY	ACTN4--MT-CO1	5	3	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	2635	25581	0	0	0.0577	0.0346	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SLR25_KIDNEY	0	0	0.0923	FALSE	0	0	0	30	0	FALSE	ACH-000300
SLR25_KIDNEY	ALDH9A1--RFWD2	5	3	ALDH9A1	2760	chr1:165664489:-	RFWD2	23454	chr1:176118210:-	ONLY_REF_SPLICE	YES	384	134	0.02	0.06	0.0577	0.0346	ALDH9A1->aldehyde_dehydrogenase_9_family_member_A1,chr1:165631453-165668100:-,RFWD2->chr1:175913967-176176629:-,ring_finger_and_WD_repeat_domain_2	SLR25_KIDNEY	0.02	0.06	0.0923	TRUE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	3	11	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	22870	701	0	0.02	0.0346	0.1269	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	0.02	0.1615	FALSE	231	217	16	283	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	3	11	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	20766	0	0	1	0.0346	0.1269	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	1	0.1615	FALSE	231	217	16	283	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	3	11	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	21377	0	0	1	0.0346	0.1269	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	1	0.1615	FALSE	231	217	16	283	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	3	11	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	20755	0	0	1	0.0346	0.1269	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	1	0.1615	FALSE	231	217	16	283	0	FALSE	ACH-000300
SLR25_KIDNEY	NRIP1--AF127936.7	2	15	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	43	2	0.28	0.89	0.0231	0.1731	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR25_KIDNEY	0.28	0.89	0.1962	FALSE	164	806	69	479	0	FALSE	ACH-000300
SLR25_KIDNEY	COL8A1--CMSS1	1	18	COL8A1	12080	chr3:99463865:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	NO	477	552	0.04	0.03	0.0115	0.2077	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SLR25_KIDNEY	0.03	0.04	0.2192	FALSE	4	4	0	17	0	FALSE	ACH-000300
SLR25_KIDNEY	LGALS3BP--KRT18	5	2	LGALS3BP	4100	chr17:76972120:-	KRT18	11864	chr12:53342905:+	INCL_NON_REF_SPLICE	YES	1933	3	0	0.7	0.0577	0.0231	LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,KRT18->chr12:53342655-53346685:+,keratin_18	SLR25_KIDNEY	0	0.7	0.0808	FALSE	0	0	0	9	0	FALSE	ACH-000300
SLR25_KIDNEY	LINC00152--AC093616.4	3	10	LINC00152	14196	chr2:87906288:+	AC093616.4	20662	chr2:88007281:+	INCL_NON_REF_SPLICE	YES	0	24	1	0.35	0.0346	0.1154	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	SLR25_KIDNEY	0.35	1	0.15	FALSE	0	0	0	4	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	5	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14388	61	0	0.1	0.0577	0.0231	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	0.1	0.0808	FALSE	230	198	14	283	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND6--MT-TE	4	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0462	0.0692	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR25_KIDNEY	0.83	1	0.1154	FALSE	499	1288	110	792	0	FALSE	ACH-000300
SLR25_KIDNEY	AGAP1--AC079135.1	3	9	AGAP1	18109	chr2:236817550:+	AC079135.1	41120	chr2:237122306:+	ONLY_REF_SPLICE	YES	71	0	0.14	1	0.0346	0.1039	NEIGHBORS[35646],AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,AC079135.1->chr2:237076090-237203570:+	SLR25_KIDNEY	0.14	1	0.1385	FALSE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	CTD-2008L17.1--RP11-456O19.2	3	9	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0346	0.1039	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SLR25_KIDNEY	0.92	1	0.1385	FALSE	33	240	4	98	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ATP6--MT-CO2	4	4	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	48	9	0.14	0.47	0.0462	0.0462	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SLR25_KIDNEY	0.14	0.47	0.0924	FALSE	59	21	0	114	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND6--MT-TE	4	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0.0462	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR25_KIDNEY	1	1	0.0924	FALSE	499	1288	110	792	0	FALSE	ACH-000300
SLR25_KIDNEY	RP11-120D5.1--MID1	2	12	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	57	0.82	0.2	0.0231	0.1385	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SLR25_KIDNEY	0.2	0.82	0.1616	FALSE	2	31	0	60	0	FALSE	ACH-000300
SLR25_KIDNEY	RP11-96H19.1--RP11-446N19.1	4	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0462	0.0462	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SLR25_KIDNEY	0.89	1	0.0924	FALSE	515	4851	409	746	0	FALSE	ACH-000300
SLR25_KIDNEY	VIM--KRT18	5	0	VIM	2123	chr10:17271380:+	KRT18	12454	chr12:53342904:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0577	0	VIM->chr10:17270258-17279592:+,vimentin,KRT18->chr12:53342655-53346685:+,keratin_18	SLR25_KIDNEY	1	1	0.0577	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	ACTN4--MT-CO1	4	3	ACTN4	15641	chr19:39214935:+	MT-CO1	26365	chrM:6550:+	INCL_NON_REF_SPLICE	YES	2503	26492	0	0	0.0462	0.0346	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SLR25_KIDNEY	0	0	0.0808	FALSE	0	0	0	30	0	FALSE	ACH-000300
SLR25_KIDNEY	ALDH9A1--RFWD2	3	7	ALDH9A1	2760	chr1:165664489:-	RFWD2	21431	chr1:176133027:-	ONLY_REF_SPLICE	YES	384	108	0.03	0.08	0.0346	0.0808	ALDH9A1->aldehyde_dehydrogenase_9_family_member_A1,chr1:165631453-165668100:-,RFWD2->chr1:175913967-176176629:-,ring_finger_and_WD_repeat_domain_2	SLR25_KIDNEY	0.03	0.08	0.1154	TRUE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	3	7	MT-ND4	1386	chrM:11145:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22396	8	0	0.56	0.0346	0.0808	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	0.56	0.1154	FALSE	231	217	16	283	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-CO2	4	3	MT-ND4	1496	chrM:11255:+	MT-CO2	5511	chrM:7718:+	INCL_NON_REF_SPLICE	YES	20745	22	0	0.24	0.0462	0.0346	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SLR25_KIDNEY	0	0.24	0.0808	FALSE	5	1	0	19	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ATP6--MT-CO1	4	2	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	NO	5514	21882	0	0	0.0462	0.0231	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SLR25_KIDNEY	0	0	0.0693	FALSE	183	104	9	328	0	FALSE	ACH-000300
SLR25_KIDNEY	RP11-123O10.4--GRIP1	4	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0462	0.0231	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SLR25_KIDNEY	0.86	0.86	0.0693	FALSE	93	270	15	244	0	FALSE	ACH-000300
SLR25_KIDNEY	EEF1D--CALR	4	1	EEF1D	17595	chr8:144662774:-	CALR	25362	chr19:13054576:+	INCL_NON_REF_SPLICE	NO	1448	2101	0	0	0.0462	0.0115	EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta,CALR->calreticulin,chr19:13049392-13055303:+	SLR25_KIDNEY	0	0	0.0577	FALSE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	4	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	15307	1953	0	0	0.0462	0.0115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	0	0.0577	FALSE	231	204	14	283	0	FALSE	ACH-000300
SLR25_KIDNEY	UCK2--GPR161	3	5	UCK2	1402	chr1:165797169:+	GPR161	28785	chr1:168066470:-	ONLY_REF_SPLICE	YES	222	78	0.03	0.09	0.0346	0.0577	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,GPR161->G_protein-coupled_receptor_161,Oncogene{Bushman},chr1:168053997-168106821:-	SLR25_KIDNEY	0.03	0.09	0.0923	TRUE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ATP6--MT-CO1	3	4	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3465	27040	0	0	0.0346	0.0462	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SLR25_KIDNEY	0	0	0.0808	FALSE	183	104	9	328	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-CO2	4	0	MT-ND4	1275	chrM:11034:+	MT-CO2	5522	chrM:7729:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SLR25_KIDNEY	1	1	0.0462	FALSE	5	1	0	19	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-CO2	4	0	MT-ND4	1227	chrM:10986:+	MT-CO2	5465	chrM:7672:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SLR25_KIDNEY	1	1	0.0462	FALSE	5	1	0	19	0	FALSE	ACH-000300
SLR25_KIDNEY	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SLR25_KIDNEY	1	1	0.0462	TRUE	0	0	0	434	0	FALSE	ACH-000300
SLR25_KIDNEY	DEPDC1B--PDE4D	3	3	DEPDC1B	4088	chr5:59982789:-	PDE4D	27733	chr5:59481514:-	ONLY_REF_SPLICE	YES	189	0	0.03	1	0.0346	0.0346	{Klijn_CCL:Ovary=1},NEIGHBORS[74792],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D	SLR25_KIDNEY	0.03	1	0.0692	FALSE	0	2	0	2	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ATP6--MT-CO1	3	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12421	26171	0	0	0.0346	0.0346	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SLR25_KIDNEY	0	0	0.0692	FALSE	183	104	9	328	0	FALSE	ACH-000300
SLR25_KIDNEY	POU2F1--ASTN1	3	3	POU2F1	4533	chr1:167272811:+	ASTN1	56031	chr1:176934373:-	ONLY_REF_SPLICE	YES	2	4	0.75	0.6	0.0346	0.0346	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ASTN1->astrotactin_1,chr1:176826438-177134109:-	SLR25_KIDNEY	0.6	0.75	0.0692	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	MT-ATP6--MT-CO1	3	2	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9867	26171	0	0	0.0346	0.0231	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SLR25_KIDNEY	0	0	0.0577	FALSE	183	104	9	328	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ATP6--MT-CO1	3	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	10274	22735	0	0	0.0346	0.0231	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SLR25_KIDNEY	0	0	0.0577	FALSE	183	104	9	328	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ATP6--MT-CO1	3	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5332	chrM:6554:+	INCL_NON_REF_SPLICE	YES	10278	26882	0	0	0.0346	0.0231	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SLR25_KIDNEY	0	0	0.0577	FALSE	183	104	9	328	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ATP6--MT-CO2	3	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	28	18	0.15	0.22	0.0346	0.0231	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SLR25_KIDNEY	0.15	0.22	0.0577	FALSE	59	21	0	114	0	FALSE	ACH-000300
SLR25_KIDNEY	AGAP1--AC079135.1	2	5	AGAP1	16940	chr2:236792093:+	AC079135.1	41120	chr2:237122306:+	ONLY_REF_SPLICE	YES	160	0	0.04	1	0.0231	0.0577	NEIGHBORS[35646],AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,AC079135.1->chr2:237076090-237203570:+	SLR25_KIDNEY	0.04	1	0.0808	FALSE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	DNM3--PAPPA2	1	9	DNM3	17413	chr1:172100428:+	PAPPA2	68347	chr1:176805771:+	ONLY_REF_SPLICE	YES	1	2	0.91	0.83	0.0115	0.1039	DNM3->chr1:171810621-172387606:+,dynamin_3,PAPPA2->Oncogene{Bushman},chr1:176432307-176814735:+,pappalysin_2	SLR25_KIDNEY	0.83	0.91	0.1154	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	MT-ATP6--MT-CO2	3	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	42	8	0.09	0.33	0.0346	0.0115	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SLR25_KIDNEY	0.09	0.33	0.0461	FALSE	59	21	0	114	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-ATP8	3	1	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	16758	1881	0	0	0.0346	0.0115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR25_KIDNEY	0	0	0.0461	FALSE	231	205	14	283	0	FALSE	ACH-000300
SLR25_KIDNEY	SFT2D2--DNM3	3	1	SFT2D2	1205	chr1:168195380:+	DNM3	33781	chr1:172037959:+	ONLY_REF_SPLICE	YES	60	2	0.06	0.67	0.0346	0.0115	SFT2D2->SFT2_domain_containing_2,chr1:168195176-168222263:+,DNM3->chr1:171810621-172387606:+,dynamin_3	SLR25_KIDNEY	0.06	0.67	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	CTD-2337A12.1--CAST	3	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SLR25_KIDNEY	1	1	0.0346	TRUE	347	1186	183	220	0	FALSE	ACH-000300
SLR25_KIDNEY	DENND1A--RP11-470P21.2	3	0	DENND1A	13435	chr9:126371715:-	RP11-470P21.2	45413	chr9:72109203:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,RP11-470P21.2->chr9:72087382-72109429:+	SLR25_KIDNEY	1	1	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	HADHA--TMSB4X	3	0	HADHA	13481	chr2:26426970:-	TMSB4X	24242	chrX:12993243:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	HADHA->chr2:26413504-26467594:-,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_alpha_subunit,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SLR25_KIDNEY	1	1	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	MAML2--MTMR2	3	0	MAML2	2798	chr11:96074547:-	MTMR2	28219	chr11:95583913:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	NEIGHBORS[51283],MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,MTMR2->chr11:95566046-95658479:-,myotubularin_related_protein_2	SLR25_KIDNEY	1	1	0.0346	FALSE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	MB21D2--FGF12	3	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	SLR25_KIDNEY	1	1	0.0346	FALSE	0	17	0	46	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1079	chrM:8605:+	MT-CO1	5225	chrM:6447:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SLR25_KIDNEY	1	1	0.0346	FALSE	183	104	9	328	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND4--MT-CO2	3	0	MT-ND4	1248	chrM:11007:+	MT-CO2	5475	chrM:7682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SLR25_KIDNEY	1	1	0.0346	FALSE	5	1	0	19	0	FALSE	ACH-000300
SLR25_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR25_KIDNEY	1	1	0.0346	FALSE	499	1288	110	792	0	FALSE	ACH-000300
SLR25_KIDNEY	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SLR25_KIDNEY	1	1	0.0346	TRUE	0	0	0	434	0	FALSE	ACH-000300
SLR25_KIDNEY	RP11-275N1.1--DNAJC1	3	0	RP11-275N1.1	1056	chr10:21661824:-	DNAJC1	18230	chr10:22095028:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	RP11-275N1.1->chr10:21629162-21661879:-,DNAJC1->DnaJ_heat_shock_protein_family_(Hsp40)_member_C1,chr10:22045466-22292698:-	SLR25_KIDNEY	1	1	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0231	0.0462	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SLR25_KIDNEY	0.86	1	0.0693	FALSE	407	2205	196	549	0	FALSE	ACH-000300
SLR25_KIDNEY	TMCO3--TRPM1	1	8	TMCO3	1279	chr13:114145588:+	TRPM1	30051	chr15:31355495:-	ONLY_REF_SPLICE	YES	253	0	0.03	1	0.0115	0.0923	TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,TRPM1->Oncogene{Bushman},chr15:31293264-31453476:-,transient_receptor_potential_cation_channel_subfamily_M_member_1	SLR25_KIDNEY	0.03	1	0.1038	TRUE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	RP11-275N1.1--DNAJC1	1	6	RP11-275N1.1	2205	chr10:21658896:-	DNAJC1	18230	chr10:22095028:-	ONLY_REF_SPLICE	YES	11	174	0.39	0.04	0.0115	0.0692	RP11-275N1.1->chr10:21629162-21661879:-,DNAJC1->DnaJ_heat_shock_protein_family_(Hsp40)_member_C1,chr10:22045466-22292698:-	SLR25_KIDNEY	0.04	0.39	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	UCK2--GPR161	2	2	UCK2	1402	chr1:165797169:+	GPR161	30510	chr1:168059906:-	ONLY_REF_SPLICE	YES	222	85	0.02	0.04	0.0231	0.0231	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,GPR161->G_protein-coupled_receptor_161,Oncogene{Bushman},chr1:168053997-168106821:-	SLR25_KIDNEY	0.02	0.04	0.0462	TRUE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	FAM155B--EDA	2	1	FAM155B	1903	chrX:68725986:+	EDA	20199	chrX:69176877:+	ONLY_REF_SPLICE	YES	33	14	0.08	0.18	0.0231	0.0115	NEIGHBORS[83560],FAM155B->chrX:68725084-68752351:+,family_with_sequence_similarity_155_member_B,EDA->chrX:68835911-69259319:+,ectodysplasin_A	SLR25_KIDNEY	0.08	0.18	0.0346	FALSE	6	5	0	3	0	FALSE	ACH-000300
SLR25_KIDNEY	POU2F1--ASTN1	2	1	POU2F1	1130	chr1:167190195:+	ASTN1	60078	chr1:176915256:-	ONLY_REF_SPLICE	YES	0	13	1	0.19	0.0231	0.0115	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ASTN1->astrotactin_1,chr1:176826438-177134109:-	SLR25_KIDNEY	0.19	1	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	AGAP1--AC079135.1	1	4	AGAP1	18109	chr2:236817550:+	AC079135.1	42683	chr2:237168150:+	ONLY_REF_SPLICE	NO	71	0	0.07	1	0.0115	0.0462	NEIGHBORS[35646],AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,AC079135.1->chr2:237076090-237203570:+	SLR25_KIDNEY	0.07	1	0.0577	FALSE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	ALDH9A1--RFWD2	1	4	ALDH9A1	2760	chr1:165664489:-	RFWD2	22334	chr1:176132124:-	ONLY_REF_SPLICE	NO	384	132	0.01	0.04	0.0115	0.0462	ALDH9A1->aldehyde_dehydrogenase_9_family_member_A1,chr1:165631453-165668100:-,RFWD2->chr1:175913967-176176629:-,ring_finger_and_WD_repeat_domain_2	SLR25_KIDNEY	0.01	0.04	0.0577	FALSE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	ALDH9A1--RFWD2	2	0	ALDH9A1	1486	chr1:165667615:-	RFWD2	21431	chr1:176133027:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	ALDH9A1->aldehyde_dehydrogenase_9_family_member_A1,chr1:165631453-165668100:-,RFWD2->chr1:175913967-176176629:-,ring_finger_and_WD_repeat_domain_2	SLR25_KIDNEY	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	GLI2--CCDC93	2	0	GLI2	5103	chr2:121685042:+	CCDC93	38158	chr2:118710011:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GLI2->GLI_family_zinc_finger_2,Oncogene{Bushman},chr2:121493199-121750229:+,CCDC93->chr2:118673054-118771709:-,coiled-coil_domain_containing_93	SLR25_KIDNEY	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	KRIT1--KIAA0930	2	0	KRIT1	15591	chr7:91843206:-	KIAA0930	29179	chr22:45607988:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-,KIAA0930->KIAA0930,chr22:45586219-45636650:-	SLR25_KIDNEY	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	NAB1--GLS	2	0	NAB1	7377	chr2:191524721:+	GLS	35040	chr2:191795163:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	NAB1->NGFI-A_binding_protein_1,chr2:191511472-191557492:+,GLS->chr2:191745553-191830278:+,glutaminase	SLR25_KIDNEY	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	NT5C2--SCLT1	2	0	NT5C2	21180	chr10:104850693:-	SCLT1	34315	chr4:129960251:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	NT5C2->5'-nucleotidase,_cytosolic_II,chr10:104845940-104953056:-,SCLT1->chr4:129786076-130014764:-,sodium_channel_and_clathrin_linker_1	SLR25_KIDNEY	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0.0462	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SLR25_KIDNEY	1	1	0.0577	FALSE	76	45	6	15	0	FALSE	ACH-000300
SLR25_KIDNEY	XKR9--RP11-326E22.1	2	0	XKR9	8344	chr8:71619388:+	RP11-326E22.1	21087	chr8:72111375:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_FI:{Brain=[count:4=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Liver=[count:1=pct:0.8]},XKR9->XK_related_9,chr8:71581600-71702606:+,RP11-326E22.1->chr8:72067692-72116458:+	SLR25_KIDNEY	1	1	0.0231	TRUE	5	29	0	13	0	FALSE	ACH-000300
SLR25_KIDNEY	ALDH9A1--RFWD2	1	3	ALDH9A1	2760	chr1:165664489:-	RFWD2	24523	chr1:176105683:-	ONLY_REF_SPLICE	NO	384	131	0.01	0.03	0.0115	0.0346	ALDH9A1->aldehyde_dehydrogenase_9_family_member_A1,chr1:165631453-165668100:-,RFWD2->chr1:175913967-176176629:-,ring_finger_and_WD_repeat_domain_2	SLR25_KIDNEY	0.01	0.03	0.0461	FALSE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	POU2F1--ASTN1	1	3	POU2F1	5576	chr1:167288293:+	ASTN1	56031	chr1:176934373:-	ONLY_REF_SPLICE	YES	2	4	0.67	0.5	0.0115	0.0346	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ASTN1->astrotactin_1,chr1:176826438-177134109:-	SLR25_KIDNEY	0.5	0.67	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	SFT2D2--DNM3	1	3	SFT2D2	7016	chr1:168208398:+	DNM3	33781	chr1:172037959:+	ONLY_REF_SPLICE	YES	86	2	0.04	0.67	0.0115	0.0346	SFT2D2->SFT2_domain_containing_2,chr1:168195176-168222263:+,DNM3->chr1:171810621-172387606:+,dynamin_3	SLR25_KIDNEY	0.04	0.67	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	VAPB--APCDD1L-AS1	1	3	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	22387	chr20:57094560:+	ONLY_REF_SPLICE	YES	158	227	0.02	0.02	0.0115	0.0346	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	SLR25_KIDNEY	0.02	0.02	0.0461	FALSE	0	0	0	3	0	FALSE	ACH-000300
SLR25_KIDNEY	VAPB--APCDD1L-AS1	1	3	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	25833	chr20:57098770:+	ONLY_REF_SPLICE	NO	158	155	0.02	0.03	0.0115	0.0346	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	SLR25_KIDNEY	0.02	0.03	0.0461	FALSE	0	1	0	5	0	FALSE	ACH-000300
SLR25_KIDNEY	C6orf99--SYTL3	1	2	C6orf99	1372	chr6:159291342:+	SYTL3	16254	chr6:159128262:+	ONLY_REF_SPLICE	YES	14	6	0.18	0.33	0.0115	0.0231	C6orf99->chr6:159290971-159331385:+,chromosome_6_open_reading_frame_99,SYTL3->chr6:159071046-159185908:+,synaptotagmin_like_3	SLR25_KIDNEY	0.18	0.33	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	NRIP1--AF127936.7	1	2	NRIP1	2336	chr21:16415816:-	AF127936.7	18197	chr21:16225752:-	ONLY_REF_SPLICE	YES	33	19	0.08	0.14	0.0115	0.0231	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR25_KIDNEY	0.08	0.14	0.0346	FALSE	1	3	0	3	0	FALSE	ACH-000300
SLR25_KIDNEY	SFT2D2--DNM3	1	2	SFT2D2	3403	chr1:168200838:+	DNM3	33781	chr1:172037959:+	ONLY_REF_SPLICE	YES	142	2	0.02	0.6	0.0115	0.0231	SFT2D2->SFT2_domain_containing_2,chr1:168195176-168222263:+,DNM3->chr1:171810621-172387606:+,dynamin_3	SLR25_KIDNEY	0.02	0.6	0.0346	TRUE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	VAPB--APCDD1L-AS1	1	2	VAPB	6860	chr20:57009761:+	APCDD1L-AS1	31664	chr20:57193796:+	ONLY_REF_SPLICE	NO	142	11	0.02	0.21	0.0115	0.0231	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	SLR25_KIDNEY	0.02	0.21	0.0346	FALSE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	AGAP1--AC079135.1	1	1	AGAP1	19268	chr2:236839567:+	AC079135.1	43776	chr2:237186015:+	ONLY_REF_SPLICE	NO	83	0	0.02	1	0.0115	0.0115	NEIGHBORS[35646],AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,AC079135.1->chr2:237076090-237203570:+	SLR25_KIDNEY	0.02	1	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	ANLN--FLNA	1	1	ANLN	6667	chr7:36446175:+	FLNA	39075	chrX:153590700:-	ONLY_REF_SPLICE	YES	784	2527	0	0	0.0115	0.0115	ANLN->Oncogene{Bushman},anillin_actin_binding_protein,chr7:36429415-36493400:+,FLNA->chrX:153576892-153603006:-,filamin_A	SLR25_KIDNEY	0	0	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	DNAJC24--ELP4	1	1	DNAJC24	2020	chr11:31392406:+	ELP4	28146	chr11:31653764:+	ONLY_REF_SPLICE	YES	159	90	0.01	0.02	0.0115	0.0115	NEIGHBORS[77901],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4	SLR25_KIDNEY	0.01	0.02	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	GAS5--DAZAP1	1	1	GAS5	5626	chr1:173833395:-	DAZAP1	13234	chr19:1417499:+	ONLY_REF_SPLICE	YES	1003	215	0	0.01	0.0115	0.0115	GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding),DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	SLR25_KIDNEY	0	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	GPR137B--EDARADD	1	1	GPR137B	6222	chr1:236347206:+	EDARADD	18504	chr1:236572516:+	ONLY_REF_SPLICE	NO	59	10	0.03	0.17	0.0115	0.0115	GTEx_FI:{Nerve=[count:12=pct:7.1],Brain=[count:4=pct:0.6],Adipose_Tissue=[count:1=pct:0.3]},GPR137B->G_protein-coupled_receptor_137B,chr1:236305832-236385165:+,EDARADD->EDAR-associated_death_domain,chr1:236511562-236648214:+	SLR25_KIDNEY	0.03	0.17	0.023	TRUE	17	20	0	2	0	FALSE	ACH-000300
SLR25_KIDNEY	LYPD6--AC144449.1	1	1	LYPD6	6579	chr2:150305661:+	AC144449.1	18144	chr2:150600232:+	ONLY_REF_SPLICE	YES	105	2	0.02	0.5	0.0115	0.0115	GTEx_FI:{Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9]},LYPD6->LY6/PLAUR_domain_containing_6,chr2:150186499-150330662:+,AC144449.1->chr2:150443710-150704747:+	SLR25_KIDNEY	0.02	0.5	0.023	TRUE	2	21	0	4	0	FALSE	ACH-000300
SLR25_KIDNEY	NAB1--GLS	1	1	NAB1	10712	chr2:191548553:+	GLS	23576	chr2:191765290:+	ONLY_REF_SPLICE	YES	115	1316	0.02	0	0.0115	0.0115	NAB1->NGFI-A_binding_protein_1,chr2:191511472-191557492:+,GLS->chr2:191745553-191830278:+,glutaminase	SLR25_KIDNEY	0	0.02	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	6	14	0.25	0.12	0.0115	0.0115	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR25_KIDNEY	0.12	0.25	0.023	FALSE	25	145	6	90	0	FALSE	ACH-000300
SLR25_KIDNEY	PCMT1--AKAP12	1	1	PCMT1	1514	chr6:150071092:+	AKAP12	21101	chr6:151669846:+	ONLY_REF_SPLICE	YES	1088	157	0	0.01	0.0115	0.0115	PCMT1->chr6:150070579-150132556:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase,AKAP12->A-kinase_anchoring_protein_12,Oncogene{Bushman},chr6:151561134-151679692:+	SLR25_KIDNEY	0	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	PHACTR1--CNPPD1	1	1	PHACTR1	7755	chr6:13053761:+	CNPPD1	30403	chr2:220041569:-	ONLY_REF_SPLICE	YES	44	67	0.04	0.03	0.0115	0.0115	PHACTR1->chr6:12717893-13288645:+,phosphatase_and_actin_regulator_1,CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1	SLR25_KIDNEY	0.03	0.04	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	POU2F1--ASTN1	1	1	POU2F1	1130	chr1:167190195:+	ASTN1	58911	chr1:176918487:-	ONLY_REF_SPLICE	YES	0	15	1	0.12	0.0115	0.0115	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ASTN1->astrotactin_1,chr1:176826438-177134109:-	SLR25_KIDNEY	0.12	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	RP11-368L12.1--RP11-96H17.1	1	1	RP11-368L12.1	3549	chr16:63565129:-	RP11-96H17.1	11338	chr16:63124226:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0.0115	GTEx_FI:{Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4]},RP11-368L12.1->chr16:63348168-63651950:-,RP11-96H17.1->chr16:63090690-63163558:-	SLR25_KIDNEY	1	1	0.023	TRUE	1	0	0	1	0	TRUE	ACH-000300
SLR25_KIDNEY	SFT2D2--DNM3	1	1	SFT2D2	1205	chr1:168195380:+	DNM3	34868	chr1:172050972:+	ONLY_REF_SPLICE	YES	60	4	0.03	0.33	0.0115	0.0115	SFT2D2->SFT2_domain_containing_2,chr1:168195176-168222263:+,DNM3->chr1:171810621-172387606:+,dynamin_3	SLR25_KIDNEY	0.03	0.33	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000300
SLR25_KIDNEY	SHISA9--U91319.1	1	1	SHISA9	7683	chr16:13010672:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	11	0	0.15	1	0.0115	0.0115	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	SLR25_KIDNEY	0.15	1	0.023	FALSE	2	8	0	8	0	FALSE	ACH-000300
SLR25_KIDNEY	TSSC1--TRAPPC12	1	1	TSSC1	2644	chr2:3358321:-	TRAPPC12	25648	chr2:3391391:+	ONLY_REF_SPLICE	YES	168	48	0.01	0.04	0.0115	0.0115	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Hippocampus=1,Liver=1,Brain_-_Frontal_Cortex_(BA9)=1,Muscle_-_Skeletal=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:-:+:[1793],TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1,TRAPPC12->chr2:3383446-3488865:+,trafficking_protein_particle_complex_12	SLR25_KIDNEY	0.01	0.04	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000300
HEP3B217_LIVER	PTPLAD1--IGF2	200	8	PTPLAD1	18266	chr15:65869815:+	IGF2	32899	chr11:2153078:-	INCL_NON_REF_SPLICE	YES	362	5300	0.36	0.04	2.4589	0.0984	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	HEP3B217_LIVER	0.04	0.36	2.5573	TRUE	0	0	0	4	0	TRUE	ACH-000625
HEP3B217_LIVER	IGF2BP2--TFEB	147	60	IGF2BP2	2393	chr3:185540941:-	TFEB	32957	chr6:41658973:-	ONLY_REF_SPLICE	YES	165	7	0.56	0.97	1.8073	0.7377	IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB	HEP3B217_LIVER	0.56	0.97	2.545	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	TIMM23B--LINC00843	92	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1311	0.2828	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HEP3B217_LIVER	1	1	1.4139	TRUE	508	994	45	981	0	FALSE	ACH-000625
HEP3B217_LIVER	NF2--HORMAD2	63	25	NF2	7986	chr22:30054253:+	HORMAD2	37873	chr22:30572052:+	ONLY_REF_SPLICE	YES	29	0	0.75	1	0.7745	0.3074	NF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:29999545-30094587:+,neurofibromin_2_(merlin),HORMAD2->HORMA_domain_containing_2,chr22:30476163-30573064:+	HEP3B217_LIVER	0.75	1	1.0819	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	TIMM23--RP11-464F9.1	62	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	190	2	0.25	0.97	0.7623	0.0246	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HEP3B217_LIVER	0.25	0.97	0.7869	TRUE	519	3926	326	965	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ND4L	22	135	MT-ND4	1531	chrM:11290:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	816	0	0.16	1	0.2705	1.6597	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEP3B217_LIVER	0.16	1	1.9302	FALSE	344	827	44	306	0	FALSE	ACH-000625
HEP3B217_LIVER	PTPLAD1--IGF2	45	10	PTPLAD1	18266	chr15:65869815:+	IGF2	32735	chr11:2153242:-	INCL_NON_REF_SPLICE	YES	362	3722	0.13	0.01	0.5532	0.1229	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	HEP3B217_LIVER	0.01	0.13	0.6761	TRUE	0	0	0	4	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ND4L	12	136	MT-ND4	1499	chrM:11258:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	557	0	0.21	1	0.1475	1.672	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEP3B217_LIVER	0.21	1	1.8195	FALSE	344	827	44	306	0	FALSE	ACH-000625
HEP3B217_LIVER	LONP1--HCN2	40	19	LONP1	15543	chr19:5696065:-	HCN2	24242	chr19:603544:+	ONLY_REF_SPLICE	YES	340	1	0.15	0.98	0.4918	0.2336	LONP1->chr19:5691845-5720583:-,lon_peptidase_1,_mitochondrial,HCN2->chr19:589893-617159:+,hyperpolarization_activated_cyclic_nucleotide_gated_potassium_channel_2	HEP3B217_LIVER	0.15	0.98	0.7254	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ND4L	4	136	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	528	0	0.21	1	0.0492	1.672	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEP3B217_LIVER	0.21	1	1.7212	FALSE	344	827	44	306	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ND4L	4	135	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	24	0	0.85	1	0.0492	1.6597	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEP3B217_LIVER	0.85	1	1.7089	FALSE	344	826	44	306	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ND4L	3	135	MT-ND4	1270	chrM:11029:+	MT-ND4L	5496	chrM:10587:+	INCL_NON_REF_SPLICE	YES	46	0	0.75	1	0.0369	1.6597	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEP3B217_LIVER	0.75	1	1.6966	FALSE	344	827	44	306	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-TA--MT-TC	36	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4426	0.0246	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEP3B217_LIVER	1	1	0.4672	FALSE	462	80	0	856	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ND4L	3	133	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	24	0	0.85	1	0.0369	1.6352	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEP3B217_LIVER	0.85	1	1.6721	FALSE	344	826	44	306	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ND4L	3	99	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	0	0.95	1	0.0369	1.2171	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEP3B217_LIVER	0.95	1	1.254	FALSE	344	821	44	306	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ND4L	3	99	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	61	0	0.63	1	0.0369	1.2171	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEP3B217_LIVER	0.63	1	1.254	FALSE	344	827	44	306	0	FALSE	ACH-000625
HEP3B217_LIVER	IGF2BP2--TFEB	13	45	IGF2BP2	1274	chr3:185542571:-	TFEB	32957	chr6:41658973:-	ONLY_REF_SPLICE	YES	166	7	0.26	0.89	0.1598	0.5532	IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB	HEP3B217_LIVER	0.26	0.89	0.713	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ND4L	15	29	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8895	0	0	1	0.1844	0.3565	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEP3B217_LIVER	0	1	0.5409	FALSE	328	800	43	304	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ATP6	17	1	MT-ND4	1209	chrM:10968:+	MT-ATP6	5317	chrM:8465:+	INCL_NON_REF_SPLICE	NO	9641	0	0	1	0.209	0.0123	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEP3B217_LIVER	0	1	0.2213	FALSE	21	91	18	8	0	FALSE	ACH-000625
HEP3B217_LIVER	IGF2BP2--TFEB	2	60	IGF2BP2	2393	chr3:185540941:-	TFEB	31610	chr6:41673490:-	ONLY_REF_SPLICE	YES	165	7	0.27	0.9	0.0246	0.7377	IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB	HEP3B217_LIVER	0.27	0.9	0.7623	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	IGF2BP2--TFEB	2	60	IGF2BP2	3513	chr3:185538800:-	TFEB	32957	chr6:41658973:-	ONLY_REF_SPLICE	YES	175	7	0.26	0.9	0.0246	0.7377	IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB	HEP3B217_LIVER	0.26	0.9	0.7623	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	MT-ATP6--MT-CO2	15	1	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	114	4	0.12	0.8	0.1844	0.0123	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEP3B217_LIVER	0.12	0.8	0.1967	FALSE	59	21	0	114	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ND4L	3	45	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	5	0	0.91	1	0.0369	0.5532	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEP3B217_LIVER	0.91	1	0.5901	FALSE	344	821	44	306	0	FALSE	ACH-000625
HEP3B217_LIVER	PTPLAD1--IGF2	11	10	PTPLAD1	18266	chr15:65869815:+	IGF2	32673	chr11:2153304:-	INCL_NON_REF_SPLICE	NO	362	2734	0.05	0.01	0.1352	0.1229	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	HEP3B217_LIVER	0.01	0.05	0.2581	FALSE	0	0	0	4	0	FALSE	ACH-000625
HEP3B217_LIVER	PTPLAD1--IGF2	11	7	PTPLAD1	18266	chr15:65869815:+	IGF2	32958	chr11:2153019:-	INCL_NON_REF_SPLICE	YES	362	5715	0.05	0	0.1352	0.0861	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	HEP3B217_LIVER	0	0.05	0.2213	TRUE	0	0	0	4	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ND4L	11	0	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1352	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEP3B217_LIVER	1	1	0.1352	FALSE	344	821	44	306	0	FALSE	ACH-000625
HEP3B217_LIVER	HSPBP1--GRK5	10	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1229	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HEP3B217_LIVER	1	1	0.1229	TRUE	1	39	0	134	39	FALSE	ACH-000625
HEP3B217_LIVER	MT-ATP6--MT-CO2	9	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	114	4	0.09	0.73	0.1106	0.0246	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEP3B217_LIVER	0.09	0.73	0.1352	FALSE	59	21	0	114	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ND4L	5	15	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	816	0	0.02	1	0.0615	0.1844	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEP3B217_LIVER	0.02	1	0.2459	FALSE	344	827	44	306	0	FALSE	ACH-000625
HEP3B217_LIVER	RP11-96H19.1--RP11-446N19.1	8	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0984	0.0246	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEP3B217_LIVER	0.77	1	0.123	FALSE	515	4851	409	746	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ATP6--MT-CO2	8	0	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0984	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEP3B217_LIVER	1	1	0.0984	FALSE	59	21	0	114	0	FALSE	ACH-000625
HEP3B217_LIVER	NRIP1--AF127936.7	7	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0861	0.0246	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEP3B217_LIVER	1	1	0.1107	FALSE	292	1546	117	613	0	FALSE	ACH-000625
HEP3B217_LIVER	EEF1A1--ALB	6	4	EEF1A1	5898	chr6:74228077:-	ALB	12680	chr4:74270086:+	ONLY_REF_SPLICE	YES	9776	8	0	0.56	0.0738	0.0492	GTEx&tcga_normals:30/3694=0.81%,GTEx:0.05%,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1,ALB->albumin,chr4:74262831-74287129:+	HEP3B217_LIVER	0	0.56	0.123	TRUE	0	1	0	1	0	FALSE	ACH-000625
HEP3B217_LIVER	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0861	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEP3B217_LIVER	1	1	0.0861	FALSE	13	9	0	364	0	FALSE	ACH-000625
HEP3B217_LIVER	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0861	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEP3B217_LIVER	1	1	0.0861	FALSE	13	9	0	364	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ATP6--MT-CO2	7	0	MT-ATP6	1128	chrM:8654:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0861	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEP3B217_LIVER	1	1	0.0861	FALSE	59	21	0	114	0	FALSE	ACH-000625
HEP3B217_LIVER	H19--MT-ND2	6	3	H19	4377	chr11:2016982:-	MT-ND2	8802	chrM:5318:+	INCL_NON_REF_SPLICE	YES	9203	3762	0	0	0.0738	0.0369	H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HEP3B217_LIVER	0	0	0.1107	FALSE	0	0	0	3	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0738	0.0369	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEP3B217_LIVER	1	1	0.1107	FALSE	462	80	0	856	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ATP6--MT-CO2	6	0	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0738	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEP3B217_LIVER	1	1	0.0738	FALSE	59	21	0	114	0	FALSE	ACH-000625
HEP3B217_LIVER	RFC1--SMIM14	5	4	RFC1	5586	chr4:39343965:-	SMIM14	40440	chr4:39558190:-	ONLY_REF_SPLICE	YES	209	88	0.04	0.09	0.0615	0.0492	RFC1->chr4:39289076-39367995:-,replication_factor_C_subunit_1,SMIM14->chr4:39547950-39640710:-,small_integral_membrane_protein_14	HEP3B217_LIVER	0.04	0.09	0.1107	TRUE	0	0	0	1	0	FALSE	ACH-000625
HEP3B217_LIVER	H19--MT-ND2	5	3	H19	4355	chr11:2017004:-	MT-ND2	8779	chrM:5295:+	INCL_NON_REF_SPLICE	NO	9344	4595	0	0	0.0615	0.0369	H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HEP3B217_LIVER	0	0	0.0984	FALSE	0	0	0	3	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND6--MT-TE	4	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0492	0.0861	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEP3B217_LIVER	0.92	1	0.1353	FALSE	499	1288	110	792	0	FALSE	ACH-000625
HEP3B217_LIVER	PTPLAD1--IGF2	5	3	PTPLAD1	18228	chr15:65869777:+	IGF2	32742	chr11:2153235:-	INCL_NON_REF_SPLICE	YES	303	3640	0.03	0	0.0615	0.0369	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	HEP3B217_LIVER	0	0.03	0.0984	FALSE	0	0	0	4	0	FALSE	ACH-000625
HEP3B217_LIVER	FTH1--ACTB	5	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	2058	2	0	0.78	0.0615	0.0246	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HEP3B217_LIVER	0	0.78	0.0861	FALSE	1	0	0	97	0	FALSE	ACH-000625
HEP3B217_LIVER	FTH1--ACTB	5	2	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	2107	3	0	0.7	0.0615	0.0246	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HEP3B217_LIVER	0	0.7	0.0861	FALSE	1	0	0	97	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ATP6	3	10	MT-ND4	2250	chrM:12009:+	MT-ATP6	5324	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1942	0	0.01	1	0.0369	0.1229	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEP3B217_LIVER	0.01	1	0.1598	FALSE	18	136	17	8	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ATP6	3	10	MT-ND4	2288	chrM:12047:+	MT-ATP6	5329	chrM:8477:+	INCL_NON_REF_SPLICE	YES	9	0	0.59	1	0.0369	0.1229	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEP3B217_LIVER	0.59	1	0.1598	FALSE	18	136	17	8	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ND4L	4	6	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	60	0	0.14	1	0.0492	0.0738	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEP3B217_LIVER	0.14	1	0.123	FALSE	344	827	44	306	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND6--MT-TE	5	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0615	0.0246	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEP3B217_LIVER	1	1	0.0861	FALSE	499	1288	110	792	0	FALSE	ACH-000625
HEP3B217_LIVER	PTPLAD1--IGF2	3	10	PTPLAD1	18266	chr15:65869815:+	IGF2	32609	chr11:2153368:-	INCL_NON_REF_SPLICE	NO	362	1920	0.03	0.01	0.0369	0.1229	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	HEP3B217_LIVER	0.01	0.03	0.1598	FALSE	0	0	0	4	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ATP6	5	0	MT-ND4	1452	chrM:11211:+	MT-ATP6	5779	chrM:8927:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0615	0	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEP3B217_LIVER	1	1	0.0615	FALSE	21	137	19	8	0	FALSE	ACH-000625
HEP3B217_LIVER	MTND4P12--MT-ATP8	5	0	MTND4P12	1994	chr5:134262733:-	MT-ATP8	5469	chrM:8457:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0615	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEP3B217_LIVER	1	1	0.0615	FALSE	19	17	1	5	0	FALSE	ACH-000625
HEP3B217_LIVER	RAB7A--IGF2	5	0	RAB7A	7495	chr3:128532465:+	IGF2	22218	chr11:2153290:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0615	0	RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	HEP3B217_LIVER	1	1	0.0615	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	RP11-476K15.1--CTD-2015H3.2	4	4	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0492	0.0492	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HEP3B217_LIVER	1	1	0.0984	FALSE	0	46	0	73	0	FALSE	ACH-000625
HEP3B217_LIVER	H19--MT-ND2	4	3	H19	4385	chr11:2016974:-	MT-ND2	8810	chrM:5326:+	INCL_NON_REF_SPLICE	YES	9256	3652	0	0	0.0492	0.0369	H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HEP3B217_LIVER	0	0	0.0861	FALSE	0	0	0	3	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ND4L	3	7	MT-ND4	1008	chrM:10767:+	MT-ND4L	5567	chrM:10658:+	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0369	0.0861	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEP3B217_LIVER	0.91	1	0.123	FALSE	344	821	44	306	0	FALSE	ACH-000625
HEP3B217_LIVER	RELN--PHF21A	4	1	RELN	56116	chr7:103151298:-	PHF21A	100507	chr11:45957290:-	ONLY_REF_SPLICE	YES	120	17	0.04	0.23	0.0492	0.0123	RELN->chr7:103112231-103629963:-,reelin,PHF21A->PHD_finger_protein_21A,chr11:45950871-46142985:-	HEP3B217_LIVER	0.04	0.23	0.0615	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	RP1-34H18.1--NAV3	4	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0492	0.0123	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HEP3B217_LIVER	1	1	0.0615	TRUE	254	575	65	124	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ATP6--MT-CO2	4	0	MT-ATP6	1123	chrM:8649:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0492	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEP3B217_LIVER	1	1	0.0492	FALSE	59	21	0	114	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ATP6	4	0	MT-ND4	1531	chrM:11290:+	MT-ATP6	5883	chrM:9031:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0492	0	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEP3B217_LIVER	1	1	0.0492	FALSE	21	137	19	8	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND6--MT-TE	3	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0.0492	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEP3B217_LIVER	1	1	0.0861	FALSE	499	1288	110	792	0	FALSE	ACH-000625
HEP3B217_LIVER	MTND4P12--MT-ATP8	4	0	MTND4P12	1216	chr5:134263511:-	MT-ATP8	5480	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0492	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEP3B217_LIVER	1	1	0.0492	FALSE	19	17	1	5	0	FALSE	ACH-000625
HEP3B217_LIVER	MTND4P12--MT-ATP8	4	0	MTND4P12	1989	chr5:134262738:-	MT-ATP8	5464	chrM:8452:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0492	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEP3B217_LIVER	1	1	0.0492	FALSE	19	17	1	5	0	FALSE	ACH-000625
HEP3B217_LIVER	WDR3--DPYD	4	0	WDR3	10612	chr1:118486249:+	DPYD	45414	chr1:98060722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0492	0	WDR3->WD_repeat_domain_3,chr1:118472343-118509165:+,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	HEP3B217_LIVER	1	1	0.0492	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	MT-ATP6--MT-CO2	3	3	MT-ATP6	1436	chrM:8962:+	MT-CO2	4890	chrM:7794:+	INCL_NON_REF_SPLICE	YES	3	6	0.67	0.5	0.0369	0.0369	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEP3B217_LIVER	0.5	0.67	0.0738	FALSE	59	21	0	114	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ATP6	3	3	MT-ND4	1514	chrM:11273:+	MT-ATP6	5425	chrM:8573:+	INCL_NON_REF_SPLICE	YES	13558	0	0	1	0.0369	0.0369	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEP3B217_LIVER	0	1	0.0738	FALSE	21	137	19	8	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ATP6	3	3	MT-ND4	2000	chrM:11759:+	MT-ATP6	5573	chrM:8721:+	INCL_NON_REF_SPLICE	YES	11232	4088	0	0	0.0369	0.0369	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEP3B217_LIVER	0	0	0.0738	FALSE	21	137	19	8	0	FALSE	ACH-000625
HEP3B217_LIVER	PTPLAD1--IGF2	3	3	PTPLAD1	18244	chr15:65869793:+	IGF2	32926	chr11:2153051:-	INCL_NON_REF_SPLICE	NO	309	5582	0.02	0	0.0369	0.0369	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	HEP3B217_LIVER	0	0.02	0.0738	FALSE	0	0	0	4	0	FALSE	ACH-000625
HEP3B217_LIVER	FNDC3B--PRKCI	3	2	FNDC3B	20740	chr3:172028671:+	PRKCI	54525	chr3:169991074:+	ONLY_REF_SPLICE	YES	187	73	0.03	0.06	0.0369	0.0246	FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,PRKCI->ArcherDX_panel,FoundationOne_panel,chr3:169940153-170023769:+,protein_kinase_C_iota	HEP3B217_LIVER	0.03	0.06	0.0615	TRUE	0	0	0	1	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ATP6--MT-CO2	3	2	MT-ATP6	1572	chrM:9098:+	MT-CO2	4969	chrM:7873:+	INCL_NON_REF_SPLICE	YES	1	8	0.83	0.38	0.0369	0.0246	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEP3B217_LIVER	0.38	0.83	0.0615	FALSE	59	21	0	114	0	FALSE	ACH-000625
HEP3B217_LIVER	NRIP1--AF127936.7	3	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.2	1	0.0369	0.0246	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEP3B217_LIVER	0.2	1	0.0615	FALSE	164	806	69	479	0	FALSE	ACH-000625
HEP3B217_LIVER	PTPLAD1--IGF2	3	2	PTPLAD1	18228	chr15:65869777:+	IGF2	32805	chr11:2153172:-	INCL_NON_REF_SPLICE	YES	303	4679	0.02	0	0.0369	0.0246	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	HEP3B217_LIVER	0	0.02	0.0615	FALSE	0	0	0	4	0	FALSE	ACH-000625
HEP3B217_LIVER	SCARB1--UBC	3	2	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	263	53	0.02	0.09	0.0369	0.0246	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	HEP3B217_LIVER	0.02	0.09	0.0615	TRUE	55	66	6	101	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ATP6--MT-CO2	3	1	MT-ATP6	1456	chrM:8982:+	MT-CO2	5054	chrM:7958:+	INCL_NON_REF_SPLICE	YES	3	3	0.57	0.57	0.0369	0.0123	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEP3B217_LIVER	0.57	0.57	0.0492	FALSE	59	21	0	114	0	FALSE	ACH-000625
HEP3B217_LIVER	PTPLAD1--IGF2	3	1	PTPLAD1	18228	chr15:65869777:+	IGF2	33046	chr11:2152931:-	INCL_NON_REF_SPLICE	YES	303	5320	0.01	0	0.0369	0.0123	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	HEP3B217_LIVER	0	0.01	0.0492	FALSE	0	0	0	4	0	FALSE	ACH-000625
HEP3B217_LIVER	TNS3--HUS1	3	1	TNS3	9815	chr7:47520701:-	HUS1	49393	chr7:48018413:-	ONLY_REF_SPLICE	YES	174	9	0.02	0.31	0.0369	0.0123	TNS3->chr7:47314752-47622156:-,tensin_3,HUS1->HUS1_checkpoint_clamp_component,Oncogene{Bushman},chr7:47735328-48019178:-	HEP3B217_LIVER	0.02	0.31	0.0492	TRUE	0	0	0	1	0	FALSE	ACH-000625
HEP3B217_LIVER	BSG--SHC2	3	0	BSG	2405	chr19:572701:+	SHC2	22277	chr19:425231:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0369	0	GTEx_FI:{Vagina=[count:1=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=3;pct=0.03%;dist=Pancreas=1,Lung=1,Vagina=1},BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,SHC2->SHC_(Src_homology_2_domain_containing)_transforming_protein_2,chr19:416583-460996:-	HEP3B217_LIVER	1	1	0.0369	TRUE	6	22	0	2	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ATP6--MT-CO2	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEP3B217_LIVER	1	1	0.0369	FALSE	59	21	0	114	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ATP6--MT-CO2	3	0	MT-ATP6	1098	chrM:8624:+	MT-CO2	4969	chrM:7873:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEP3B217_LIVER	1	1	0.0369	FALSE	59	21	0	114	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ATP6--MT-CO2	3	0	MT-ATP6	1142	chrM:8668:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEP3B217_LIVER	1	1	0.0369	FALSE	59	21	0	114	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ATP6	3	0	MT-ND4	1477	chrM:11236:+	MT-ATP6	5823	chrM:8971:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEP3B217_LIVER	1	1	0.0369	FALSE	21	137	19	8	0	FALSE	ACH-000625
HEP3B217_LIVER	MT-ND4--MT-ND4L	3	0	MT-ND4	1033	chrM:10792:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEP3B217_LIVER	1	1	0.0369	FALSE	344	821	44	306	0	FALSE	ACH-000625
HEP3B217_LIVER	RAB7A--IGF2	3	0	RAB7A	7495	chr3:128532465:+	IGF2	22511	chr11:2152997:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	HEP3B217_LIVER	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	RAB7A--IGF2	3	0	RAB7A	7475	chr3:128532445:+	IGF2	22417	chr11:2153091:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	HEP3B217_LIVER	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	SPATS2L--EEF1A1P5	3	0	SPATS2L	27062	chr2:201342484:+	EEF1A1P5	34584	chr9:135894835:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	SPATS2L->chr2:201170604-201346986:+,spermatogenesis_associated_serine_rich_2_like,EEF1A1P5->chr9:135894816-135896553:+,eukaryotic_translation_elongation_factor_1_alpha_1_pseudogene_5	HEP3B217_LIVER	1	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	RP1-34H18.1--RP11-781A6.1	2	1	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0.0123	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	HEP3B217_LIVER	1	1	0.0369	TRUE	94	160	11	37	0	FALSE	ACH-000625
HEP3B217_LIVER	IL1RAP--CCDC50	2	0	IL1RAP	1169	chr3:190232008:+	CCDC50	34471	chr3:191074877:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	IL1RAP->chr3:190231840-190375843:+,interleukin_1_receptor_accessory_protein,CCDC50->chr3:191046866-191116459:+,coiled-coil_domain_containing_50	HEP3B217_LIVER	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	RP11-476K15.1--CTD-2015H3.2	1	4	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0.0492	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HEP3B217_LIVER	1	1	0.0615	FALSE	0	46	0	73	0	FALSE	ACH-000625
HEP3B217_LIVER	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0123	0.0369	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEP3B217_LIVER	0.8	1	0.0492	FALSE	192	492	57	212	0	FALSE	ACH-000625
HEP3B217_LIVER	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0123	0.0369	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEP3B217_LIVER	0.57	1	0.0492	FALSE	407	2205	196	549	0	FALSE	ACH-000625
HEP3B217_LIVER	SCARB1--UBC	1	2	SCARB1	14299	chr12:125292307:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	366	53	0.01	0.05	0.0123	0.0246	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	HEP3B217_LIVER	0.01	0.05	0.0369	FALSE	2	3	0	2	0	FALSE	ACH-000625
HEP3B217_LIVER	WEE1--ZNF143	1	2	WEE1	8998	chr11:9603225:+	ZNF143	33187	chr11:9530166:+	ONLY_REF_SPLICE	YES	161	34	0.02	0.08	0.0123	0.0246	LOCAL_REARRANGEMENT:+:[45157],WEE1->WEE1_G2_checkpoint_kinase,chr11:9595228-9615004:+,ZNF143->chr11:9481866-9550071:+,zinc_finger_protein_143	HEP3B217_LIVER	0.02	0.08	0.0369	TRUE	0	0	0	1	0	FALSE	ACH-000625
HEP3B217_LIVER	BRI3BP--UBC	1	1	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	31	53	0.06	0.04	0.0123	0.0123	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	HEP3B217_LIVER	0.04	0.06	0.0246	TRUE	5	99	5	34	0	FALSE	ACH-000625
HEP3B217_LIVER	CPSF6--MGAT4A	1	1	CPSF6	11046	chr12:69656342:+	MGAT4A	22140	chr2:99343030:-	ONLY_REF_SPLICE	NO	234	4	0.01	0.33	0.0123	0.0123	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,MGAT4A->chr2:99235569-99347589:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_A	HEP3B217_LIVER	0.01	0.33	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000625
HEP3B217_LIVER	POLA1--ALB	1	1	POLA1	37730	chrX:24948666:+	ALB	44090	chr4:74270086:+	ONLY_REF_SPLICE	YES	19	8	0.1	0.2	0.0123	0.0123	POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit,ALB->albumin,chr4:74262831-74287129:+	HEP3B217_LIVER	0.1	0.2	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000625
HEP3B217_LIVER	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	61	1	0.03	0.0123	0.0123	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEP3B217_LIVER	0.03	1	0.0246	TRUE	465	1949	224	605	0	FALSE	ACH-000625
SNU869_BILIARY_TRACT	TIMM23B--LINC00843	128	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.838	0.1244	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU869_BILIARY_TRACT	1	1	0.9624	TRUE	508	994	45	981	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	ATXN1L--BAHD1	113	40	ATXN1L	1114	chr16:71880007:+	BAHD1	18840	chr15:40750650:+	ONLY_REF_SPLICE	YES	10	0	0.94	1	0.7398	0.2619	ATXN1L->ataxin_1_like,chr16:71879894-71919171:+,BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+	SNU869_BILIARY_TRACT	0.94	1	1.0017	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	SLC35D2--DPYSL4	96	7	SLC35D2	1234	chr9:99145759:-	DPYSL4	19929	chr10:134004251:+	ONLY_REF_SPLICE	YES	11	0	0.9	1	0.6285	0.0458	SLC35D2->chr9:99082988-99145992:-,solute_carrier_family_35_member_D2,DPYSL4->chr10:134000404-134019280:+,dihydropyrimidinase_like_4	SNU869_BILIARY_TRACT	0.9	1	0.6743	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	61	39	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	10	0	0.91	1	0.3994	0.2553	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.91	1	0.6547	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	LPP--OR4G4P	67	8	LPP	12408	chr3:188202492:+	OR4G4P	54769	chr1:53282:+	INCL_NON_REF_SPLICE	YES	14	1	0.84	0.99	0.4386	0.0524	LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,OR4G4P->chr1:52473-54936:+,olfactory_receptor_family_4_subfamily_G_member_4_pseudogene	SNU869_BILIARY_TRACT	0.84	0.99	0.491	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	MT-TA--MT-TC	66	12	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4321	0.0786	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU869_BILIARY_TRACT	1	1	0.5107	FALSE	462	80	0	856	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	TIMM23--RP11-464F9.1	63	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	153	3	0.3	0.96	0.4125	0.0262	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU869_BILIARY_TRACT	0.3	0.96	0.4387	TRUE	519	3926	326	965	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	NF1--NUFIP2	46	0	NF1	63040	chr17:29686559:+	NUFIP2	87785	chr17:27586533:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3012	0	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2	SNU869_BILIARY_TRACT	1	1	0.3012	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND3--MT-ATP8	44	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2881	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	1	1	0.2881	FALSE	351	233	23	137	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	39	13	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3615	24	0.01	0.68	0.2553	0.0851	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	0.68	0.3404	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	ZNF654--HMGB2	35	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2291	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU869_BILIARY_TRACT	1	1	0.2291	TRUE	0	0	0	518	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	30	19	MT-ND5	2112	chrM:13448:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	5125	0	0.01	1	0.1964	0.1244	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	1	0.3208	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	29	21	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	10	521	0.83	0.09	0.1899	0.1375	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.09	0.83	0.3274	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	AC104389.28--HBE1	27	13	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	5	4	0.89	0.91	0.1768	0.0851	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	SNU869_BILIARY_TRACT	0.89	0.91	0.2619	TRUE	0	48	0	65	48	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND6--MT-TE	28	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.1833	0.0131	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU869_BILIARY_TRACT	0.94	1	0.1964	FALSE	499	1288	110	792	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	16	44	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1048	0.2881	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	1	1	0.3929	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	23	2	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	5486	10	0	0.71	0.1506	0.0131	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	0.71	0.1637	FALSE	41	30	6	102	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	AC104389.28--HBE1	21	1	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	3	4	0.88	0.85	0.1375	0.0065	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	SNU869_BILIARY_TRACT	0.85	0.88	0.144	TRUE	0	16	0	53	13	FALSE	ACH-000182
SNU869_BILIARY_TRACT	BAHD1--HERC2P7	21	0	BAHD1	2302	chr15:40733467:+	HERC2P7	15715	chr15:23390675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1375	0	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,HERC2P7->chr15:23388289-23392657:+,hect_domain_and_RLD_2_pseudogene_7	SNU869_BILIARY_TRACT	1	1	0.1375	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	9	46	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0589	0.3012	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	1	1	0.3601	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND6--MT-TE	18	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.1178	0.0589	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU869_BILIARY_TRACT	0.9	1	0.1767	FALSE	499	1288	110	792	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	8	45	MT-ND5	2792	chrM:14128:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0.2946	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	1	1	0.347	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	16	13	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5125	81	0.01	0.26	0.1048	0.0851	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	0.26	0.1899	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	C15orf57--CBX3	15	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	65	15	0.27	0.62	0.0982	0.0589	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU869_BILIARY_TRACT	0.27	0.62	0.1571	TRUE	267	562	48	632	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	5	45	MT-ND5	2795	chrM:14131:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.2946	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	1	1	0.3273	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	8	30	MT-ND5	2583	chrM:13919:+	MT-ATP8	5869	chrM:8422:+	INCL_NON_REF_SPLICE	YES	3085	0	0.01	1	0.0524	0.1964	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	1	0.2488	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	15	0	MT-ND5	1231	chrM:12567:+	MT-ATP8	5970	chrM:8523:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0982	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	1	1	0.0982	FALSE	41	30	6	102	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	6	36	MT-ND5	2667	chrM:14003:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1590	0	0.03	1	0.0393	0.2357	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.03	1	0.275	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	NIPA2--POLA1	15	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0982	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SNU869_BILIARY_TRACT	1	1	0.0982	TRUE	46	1352	75	139	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	8	27	MT-ND5	2339	chrM:13675:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	3206	0	0.01	1	0.0524	0.1768	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	1	0.2292	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	RP11-96H19.1--RP11-446N19.1	14	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.0917	0.0196	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU869_BILIARY_TRACT	0.94	1	0.1113	FALSE	515	4851	409	746	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	4	41	MT-ND5	2712	chrM:14048:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	88	0	0.34	1	0.0262	0.2684	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.34	1	0.2946	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	5	37	MT-ND5	2644	chrM:13980:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	2085	0	0.02	1	0.0327	0.2422	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.02	1	0.2749	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	9	21	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	3074	2	0.01	0.94	0.0589	0.1375	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	0.94	0.1964	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-TA--MT-TC	14	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0917	0.0065	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU869_BILIARY_TRACT	1	1	0.0982	FALSE	462	80	0	856	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	9	19	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	4929	0	0.01	1	0.0589	0.1244	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	1	0.1833	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	NRIP1--AF127936.7	13	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	33	0	0.33	1	0.0851	0.0196	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU869_BILIARY_TRACT	0.33	1	0.1047	FALSE	164	806	69	479	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	4	36	MT-ND5	2675	chrM:14011:+	MT-ATP8	5892	chrM:8445:+	INCL_NON_REF_SPLICE	YES	1275	0	0.03	1	0.0262	0.2357	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.03	1	0.2619	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	9	15	MT-ND5	2641	chrM:13977:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	2198	884	0.01	0.03	0.0589	0.0982	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	0.03	0.1571	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	6	26	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18	81	0.64	0.28	0.0393	0.1702	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.28	0.64	0.2095	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND6--MT-TE	12	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0786	0.0131	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU869_BILIARY_TRACT	0.88	1	0.0917	FALSE	499	1288	110	792	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	37	MT-ND5	2648	chrM:13984:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	2001	0	0.02	1	0.0196	0.2422	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.02	1	0.2618	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	NRIP1--AF127936.7	12	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0786	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU869_BILIARY_TRACT	1	1	0.0786	FALSE	292	1546	117	613	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	6	23	MT-ND5	2647	chrM:13983:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2048	24	0.01	0.55	0.0393	0.1506	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	0.55	0.1899	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	5	26	MT-ND5	2712	chrM:14048:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	88	81	0.26	0.28	0.0327	0.1702	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.26	0.28	0.2029	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	34	MT-ND5	2872	chrM:14208:+	MT-ATP8	5906	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.9	0.0196	0.2226	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.9	1	0.2422	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	4	29	MT-ND5	2879	chrM:14215:+	MT-ATP8	5913	chrM:8466:+	INCL_NON_REF_SPLICE	NO	0	20	1	0.62	0.0262	0.1899	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.62	1	0.2161	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	6	20	MT-ND5	2178	chrM:13514:+	MT-ATP8	5875	chrM:8428:+	INCL_NON_REF_SPLICE	YES	3955	0	0.01	1	0.0393	0.1309	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	1	0.1702	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	RP11-123O10.4--GRIP1	11	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.072	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU869_BILIARY_TRACT	1	1	0.072	FALSE	416	2512	207	587	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	5	23	MT-ND5	2641	chrM:13977:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	NO	2198	24	0.01	0.54	0.0327	0.1506	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	0.54	0.1833	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	7	15	MT-ND5	2303	chrM:13639:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3135	24	0.01	0.48	0.0458	0.0982	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	0.48	0.144	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND6--MT-TE	4	27	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0262	0.1768	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU869_BILIARY_TRACT	1	1	0.203	FALSE	499	1288	110	792	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	4	26	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18	24	0.62	0.56	0.0262	0.1702	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.56	0.62	0.1964	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	30	MT-ND5	2764	chrM:14100:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	NO	0	16	1	0.67	0.0196	0.1964	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.67	1	0.216	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND6--MT-TE	7	14	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0458	0.0917	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU869_BILIARY_TRACT	0.88	1	0.1375	FALSE	499	1288	110	792	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	RP11-114H23.1--RP11-114H23.2	10	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0655	0.0131	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU869_BILIARY_TRACT	0.92	1	0.0786	FALSE	81	155	12	160	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	AC104389.28--HBE1	10	1	AC104389.28	1093	chr11:5526790:-	HBE1	13750	chr11:5291386:-	INCL_NON_REF_SPLICE	YES	0	4	1	0.73	0.0655	0.0065	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	SNU869_BILIARY_TRACT	0.73	1	0.072	TRUE	0	16	0	53	13	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	28	MT-ND5	2712	chrM:14048:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	YES	88	10	0.26	0.76	0.0196	0.1833	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.26	0.76	0.2029	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-TA--MT-TC	6	16	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0.1048	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU869_BILIARY_TRACT	1	1	0.1441	FALSE	462	80	0	856	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	OR51S1--TP53I11	10	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0655	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU869_BILIARY_TRACT	1	1	0.0655	TRUE	402	216	10	229	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	AC104389.28--HBE1	9	1	AC104389.28	1084	chr11:5526799:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	0	4	1	0.71	0.0589	0.0065	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	SNU869_BILIARY_TRACT	0.71	1	0.0654	TRUE	0	16	0	53	13	FALSE	ACH-000182
SNU869_BILIARY_TRACT	BAHD1--HERC2P7	9	0	BAHD1	2302	chr15:40733467:+	HERC2P7	14514	chr15:23388289:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0589	0	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,HERC2P7->chr15:23388289-23392657:+,hect_domain_and_RLD_2_pseudogene_7	SNU869_BILIARY_TRACT	1	1	0.0589	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	24	MT-ND5	2525	chrM:13861:+	MT-ATP8	5903	chrM:8456:+	INCL_NON_REF_SPLICE	YES	3328	0	0.01	1	0.0196	0.1571	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	1	0.1767	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	4	20	MT-ND5	2792	chrM:14128:+	MT-ATP8	5933	chrM:8486:+	INCL_NON_REF_SPLICE	YES	0	818	1	0.03	0.0262	0.1309	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.03	1	0.1571	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	4	20	MT-ND5	2181	chrM:13517:+	MT-ATP8	5878	chrM:8431:+	INCL_NON_REF_SPLICE	YES	3780	0	0.01	1	0.0262	0.1309	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	1	0.1571	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	23	MT-ND5	2650	chrM:13986:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2001	81	0.01	0.24	0.0196	0.1506	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	0.24	0.1702	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	23	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	3082	0	0.01	1	0.0196	0.1506	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	1	0.1702	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	6	10	MT-ND5	1785	chrM:13121:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3333	0	0	1	0.0393	0.0655	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	1	0.1048	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	7	6	MT-ND5	1894	chrM:13230:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	4067	1144	0	0.01	0.0458	0.0393	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	0.01	0.0851	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	5	13	MT-ND5	1828	chrM:13164:+	MT-ATP8	5867	chrM:8420:+	INCL_NON_REF_SPLICE	YES	3441	0	0.01	1	0.0327	0.0851	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	1	0.1178	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	21	MT-ND5	2221	chrM:13557:+	MT-ATP8	5839	chrM:8392:+	INCL_NON_REF_SPLICE	YES	3665	0	0.01	1	0.0196	0.1375	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	1	0.1571	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	21	MT-ND5	2243	chrM:13579:+	MT-ATP8	5883	chrM:8436:+	INCL_NON_REF_SPLICE	YES	3615	0	0.01	1	0.0196	0.1375	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	1	0.1571	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	5	13	MT-ND5	1953	chrM:13289:+	MT-ATP8	5878	chrM:8431:+	INCL_NON_REF_SPLICE	YES	4235	0	0	1	0.0327	0.0851	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	1	0.1178	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	5	13	MT-ND5	1846	chrM:13182:+	MT-ATP8	5879	chrM:8432:+	INCL_NON_REF_SPLICE	YES	4288	0	0	1	0.0327	0.0851	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	1	0.1178	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	4	16	MT-ND5	2030	chrM:13366:+	MT-ATP8	5838	chrM:8391:+	INCL_NON_REF_SPLICE	YES	4461	0	0	1	0.0262	0.1048	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	1	0.131	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	C15orf57--CBX3	6	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	61	15	0.18	0.46	0.0393	0.0458	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU869_BILIARY_TRACT	0.18	0.46	0.0851	TRUE	267	562	48	632	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	6	7	MT-ND5	1648	chrM:12984:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4280	81	0	0.14	0.0393	0.0458	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	0.14	0.0851	FALSE	42	36	7	104	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	7	3	MT-ND5	1627	chrM:12963:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	4515	884	0	0.01	0.0458	0.0196	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	0.01	0.0654	FALSE	42	36	7	104	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	19	MT-ND5	2339	chrM:13675:+	MT-ATP8	5910	chrM:8463:+	INCL_NON_REF_SPLICE	YES	3206	12	0.01	0.65	0.0196	0.1244	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	0.65	0.144	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-TA--MT-TC	5	11	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.072	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU869_BILIARY_TRACT	1	1	0.1047	FALSE	462	80	0	856	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	18	MT-ND5	2514	chrM:13850:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3175	81	0.01	0.21	0.0196	0.1178	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.01	0.21	0.1374	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND6--MT-TE	4	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0262	0.0917	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU869_BILIARY_TRACT	0.95	1	0.1179	FALSE	499	1288	110	792	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	4	13	MT-ND5	1823	chrM:13159:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	3389	0	0	1	0.0262	0.0851	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	1	0.1113	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	ABHD12--MACROD2-AS1	7	0	ABHD12	1471	chr20:25371149:-	MACROD2-AS1	25641	chr20:14865240:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0	ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-,MACROD2-AS1->MACROD2_antisense_RNA_1,chr20:14864899-14910161:-	SNU869_BILIARY_TRACT	1	1	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU869_BILIARY_TRACT	1	1	0.0458	TRUE	1	39	0	134	39	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	5	8	MT-ND5	2217	chrM:13553:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	3594	521	0	0.02	0.0327	0.0524	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	0.02	0.0851	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	5	6	MT-ND5	1331	chrM:12667:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	5371	0	0	1	0.0327	0.0393	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	1	0.072	FALSE	42	35	7	104	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	5	6	MT-ND5	1969	chrM:13305:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4347	521	0	0.02	0.0327	0.0393	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	0.02	0.072	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	13	MT-ND5	1831	chrM:13167:+	MT-ATP8	5869	chrM:8422:+	INCL_NON_REF_SPLICE	YES	3619	0	0	1	0.0196	0.0851	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	1	0.1047	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	13	MT-ND5	1959	chrM:13295:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4274	0	0	1	0.0196	0.0851	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	1	0.1047	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	5	5	MT-ND5	1570	chrM:12906:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4151	24	0	0.29	0.0327	0.0327	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	0.29	0.0654	FALSE	42	36	7	104	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	13	MT-ND5	1898	chrM:13234:+	MT-ATP8	5824	chrM:8377:+	INCL_NON_REF_SPLICE	YES	3990	0	0	1	0.0196	0.0851	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	1	0.1047	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	NRIP1--AF127936.7	6	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.26	1	0.0393	0.0065	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU869_BILIARY_TRACT	0.26	1	0.0458	FALSE	125	705	46	456	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND3--MT-ATP8	6	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	1	1	0.0393	FALSE	351	233	23	137	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	4	8	MT-ND5	1575	chrM:12911:+	MT-ATP8	5816	chrM:8369:+	INCL_NON_REF_SPLICE	YES	3884	0	0	1	0.0262	0.0524	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	1	0.0786	FALSE	42	36	7	104	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	12	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	3348	1144	0	0.01	0.0196	0.0786	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	0.01	0.0982	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	4	7	MT-ND5	1696	chrM:13032:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3732	81	0	0.12	0.0262	0.0458	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	0.12	0.072	FALSE	42	36	7	104	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	AC104389.28--HBE1	2	14	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	5	0	0.76	1	0.0131	0.0917	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	SNU869_BILIARY_TRACT	0.76	1	0.1048	TRUE	0	35	0	55	35	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	10	MT-ND5	1770	chrM:13106:+	MT-ATP8	5861	chrM:8414:+	INCL_NON_REF_SPLICE	YES	3502	0	0	1	0.0196	0.0655	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	1	0.0851	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	10	MT-ND5	1635	chrM:12971:+	MT-ATP8	5887	chrM:8440:+	INCL_NON_REF_SPLICE	YES	4306	0	0	1	0.0196	0.0655	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	1	0.0851	FALSE	42	36	7	104	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	10	MT-ND5	1789	chrM:13125:+	MT-ATP8	5881	chrM:8434:+	INCL_NON_REF_SPLICE	YES	3273	0	0	1	0.0196	0.0655	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	1	0.0851	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	10	MT-ND5	1793	chrM:13129:+	MT-ATP8	5816	chrM:8369:+	INCL_NON_REF_SPLICE	YES	3322	0	0	1	0.0196	0.0655	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	1	0.0851	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	10	MT-ND5	1733	chrM:13069:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	3598	0	0	1	0.0196	0.0655	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	1	0.0851	FALSE	43	37	8	105	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	4	5	MT-ND5	1590	chrM:12926:+	MT-ATP8	5921	chrM:8474:+	INCL_NON_REF_SPLICE	YES	4172	110	0	0.08	0.0262	0.0327	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	0.08	0.0589	FALSE	42	36	7	104	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND6--MT-TE	3	9	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.75	1	0.0196	0.0589	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU869_BILIARY_TRACT	0.75	1	0.0785	FALSE	499	1288	110	792	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND3--MT-ATP8	5	0	MT-ND3	1053	chrM:10111:+	MT-ATP8	4482	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	1	1	0.0327	FALSE	351	233	23	137	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4444	chrM:8463:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	1	1	0.0327	FALSE	351	233	23	137	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	8	MT-ND5	1613	chrM:12949:+	MT-ATP8	5867	chrM:8420:+	INCL_NON_REF_SPLICE	YES	4813	0	0	1	0.0196	0.0524	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	1	0.072	FALSE	42	36	7	104	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	NCOR2--UBC	5	0	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU869_BILIARY_TRACT	1	1	0.0327	TRUE	52	148	13	33	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-TA--MT-TC	3	6	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0.0393	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU869_BILIARY_TRACT	1	1	0.0589	FALSE	462	80	0	856	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	SLC35D2--DPYSL4	4	1	SLC35D2	1234	chr9:99145759:-	DPYSL4	21393	chr10:134006162:+	ONLY_REF_SPLICE	YES	11	4	0.31	0.56	0.0262	0.0065	SLC35D2->chr9:99082988-99145992:-,solute_carrier_family_35_member_D2,DPYSL4->chr10:134000404-134019280:+,dihydropyrimidinase_like_4	SNU869_BILIARY_TRACT	0.31	0.56	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND3--MT-ATP8	4	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0262	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	1	1	0.0262	FALSE	351	233	23	137	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND3--MT-ATP8	4	0	MT-ND3	1148	chrM:10206:+	MT-ATP8	4462	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0262	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	1	1	0.0262	FALSE	351	233	23	137	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	4	MT-ND5	1634	chrM:12970:+	MT-ATP8	5930	chrM:8483:+	INCL_NON_REF_SPLICE	YES	4353	629	0	0.01	0.0196	0.0262	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	0.01	0.0458	FALSE	42	36	7	104	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	4	0	MT-ND5	1012	chrM:12348:+	MT-ATP8	5907	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0262	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	1	1	0.0262	FALSE	34	25	3	77	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND5--MT-ATP8	3	2	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5571	81	0	0.06	0.0196	0.0131	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0	0.06	0.0327	FALSE	41	30	6	102	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	RP11-114H23.1--RP11-114H23.2	3	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0196	0.0131	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU869_BILIARY_TRACT	0.83	1	0.0327	FALSE	81	155	12	160	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND3--MT-ATP8	3	1	MT-ND3	1255	chrM:10313:+	MT-ATP8	4437	chrM:8456:+	INCL_NON_REF_SPLICE	NO	13	0	0.24	1	0.0196	0.0065	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU869_BILIARY_TRACT	0.24	1	0.0261	FALSE	351	233	23	137	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	BAHD1--HERC2P7	3	0	BAHD1	2302	chr15:40733467:+	HERC2P7	15764	chr15:23390724:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,HERC2P7->chr15:23388289-23392657:+,hect_domain_and_RLD_2_pseudogene_7	SNU869_BILIARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	EGFR--APBB2	3	0	EGFR	1345	chr7:55087058:+	APBB2	63114	chr4:40895428:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	SNU869_BILIARY_TRACT	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0196	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU869_BILIARY_TRACT	1	1	0.0196	FALSE	499	1288	110	792	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0131	0.0262	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU869_BILIARY_TRACT	0.86	1	0.0393	FALSE	467	2173	244	435	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	AGRN--TMEM8A	2	2	AGRN	4732	chr1:970704:+	TMEM8A	27749	chr16:427848:-	ONLY_REF_SPLICE	YES	183	16	0.02	0.2	0.0131	0.0131	{Klijn_CCL:Stomach=1},AGRN->agrin,chr1:955503-991496:+,TMEM8A->chr16:420773-437113:-,transmembrane_protein_8A	SNU869_BILIARY_TRACT	0.02	0.2	0.0262	TRUE	0	0	0	1	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	AC104389.28--HBE1	2	1	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0131	0.0065	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	SNU869_BILIARY_TRACT	0.5	1	0.0196	TRUE	0	11	0	26	8	FALSE	ACH-000182
SNU869_BILIARY_TRACT	CDK19--FBXL4	2	0	CDK19	1151	chr6:111137011:-	FBXL4	27113	chr6:99375698:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	CDK19->chr6:110931181-111137161:-,cyclin-dependent_kinase_19,FBXL4->F-box_and_leucine-rich_repeat_protein_4,chr6:99316420-99395849:-	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	CHD2--SRSF1	2	0	CHD2	6529	chr15:93444529:+	SRSF1	62155	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	1	2	0	9	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	CNN2--ONECUT3	2	0	CNN2	4331	chr19:1032695:+	ONECUT3	15042	chr19:1775152:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	CNN2->calponin_2,chr19:1026298-1039068:+,ONECUT3->chr19:1752372-1780987:+,one_cut_homeobox_3	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	CTA-714B7.5--FERMT3	2	0	CTA-714B7.5	4248	chr22:35567428:-	FERMT3	12859	chr11:63986723:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	CTA-714B7.5->chr22:35515817-35627049:-,FERMT3->chr11:63974150-63991354:+,fermitin_family_member_3	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	DAZAP1--SUN1	2	0	DAZAP1	8642	chr19:1422395:+	SUN1	26017	chr7:872142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	EEF1A2--HSP90AA1	2	0	EEF1A2	2310	chr20:62128973:-	HSP90AA1	16944	chr14:102551335:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	EEF1A2->Oncogene{Bushman},chr20:62119366-62130505:-,eukaryotic_translation_elongation_factor_1_alpha_2,HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	EGFR--UBC	2	0	EGFR	1345	chr7:55087058:+	UBC	47998	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	ELOVL6--INTS12	2	0	ELOVL6	1953	chr4:111119403:-	INTS12	29506	chr4:106607995:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	ELOVL6->ELOVL_fatty_acid_elongase_6,chr4:110967002-111120355:-,INTS12->chr4:106603784-106817143:-,integrator_complex_subunit_12	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	EXD3--ARRDC1	2	0	EXD3	1149	chr9:140317566:-	ARRDC1	36430	chr9:140507348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,ARRDC1->arrestin_domain_containing_1,chr9:140500106-140509812:+	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	HOXB3--HOXB9	2	0	HOXB3	1433	chr17:46681842:-	HOXB9	22377	chr17:46700497:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[16244],HOXB3->chr17:46626232-46682274:-,homeobox_B3,HOXB9->chr17:46698518-46703839:-,homeobox_B9	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	3	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	HSD17B11--ANXA4	2	0	HSD17B11	1526	chr4:88312013:-	ANXA4	24904	chr2:70033517:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	HSD17B11->chr4:88257762-88312538:-,hydroxysteroid_(17-beta)_dehydrogenase_11,ANXA4->annexin_A4,chr2:69871557-70053596:+	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	IFITM10--COL13A1	2	0	IFITM10	3764	chr11:1768897:-	COL13A1	56102	chr10:71716760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	IFITM10->chr11:1753640-1771821:-,interferon_induced_transmembrane_protein_10,COL13A1->chr10:71561644-71724031:+,collagen_type_XIII_alpha_1	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	KDM3B--KANSL1	2	0	KDM3B	22320	chr5:137761271:+	KANSL1	45942	chr17:44128070:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	KDM3B->chr5:137688285-137772717:+,lysine_demethylase_3B,KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	LARP4--TBC1D30	2	0	LARP4	2426	chr12:50794811:+	TBC1D30	38805	chr12:65221615:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+,TBC1D30->TBC1_domain_family_member_30,chr12:65174589-65274812:+	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	MROH1--CNN2	2	0	MROH1	4066	chr8:145218751:+	CNN2	45869	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1,CNN2->calponin_2,chr19:1026298-1039068:+	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	NME1--COPRS	2	0	NME1	1127	chr17:49231023:+	COPRS	13136	chr17:30180049:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	NME1->NME/NM23_nucleoside_diphosphate_kinase_1,chr17:49230897-49239789:+,COPRS->chr17:30178883-30186356:-,coordinator_of_PRMT5_and_differentiation_stimulator	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU869_BILIARY_TRACT	1	1	0.0131	FALSE	7	44	2	41	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	PGPEP1--KRT8	2	0	PGPEP1	4420	chr19:18466821:+	KRT8	27622	chr12:53292683:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	PGPEP1->chr19:18451397-18480760:+,pyroglutamyl-peptidase_I,KRT8->chr12:53290977-53343738:-,keratin_8	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	RNF128--MSANTD2	2	0	RNF128	1615	chrX:105937638:+	MSANTD2	17287	chr11:124644870:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	RNF128->chrX:105937024-106040223:+,ring_finger_protein_128,_E3_ubiquitin_protein_ligase,MSANTD2->Myb/SANT_DNA_binding_domain_containing_2,chr11:124636394-124670569:-	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	RP11-93L9.1--PPP1CB	2	0	RP11-93L9.1	3263	chr4:124582988:+	PPP1CB	19178	chr2:28974904:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	RP11-93L9.1->chr4:124571422-124851561:+,PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	SERINC2--POLD2	2	0	SERINC2	3060	chr1:31886151:+	POLD2	20738	chr7:44157663:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	SERINC2->chr1:31882412-31907525:+,serine_incorporator_2,POLD2->chr7:44154286-44163957:-,polymerase_(DNA)_delta_2,_accessory_subunit	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	SH3KBP1--MAP7D2	2	0	SH3KBP1	13083	chrX:19688980:-	MAP7D2	36277	chrX:20082923:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-,MAP7D2->MAP7_domain_containing_2,chrX:20024831-20135035:-	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	TCF7L2--NAP1L1	2	0	TCF7L2	3427	chr10:114724383:+	NAP1L1	39165	chr12:76443030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},TCF7L2->Oncogene{Bushman},chr10:114710009-114927437:+,transcription_factor_7_like_2,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	TES--MET	2	0	TES	7998	chr7:115892530:+	MET	37348	chr7:116435709:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	TICRR--HAUS6	2	0	TICRR	3039	chr15:90126196:+	HAUS6	50487	chr9:19056402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	TICRR->TOPBP1_interacting_checkpoint_and_replication_regulator,chr15:90118713-90174287:+,HAUS6->HAUS_augmin_like_complex_subunit_6,chr9:19053141-19103117:-	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	ZBTB20--HIST1H2BK	2	0	ZBTB20	36998	chr3:114099064:-	HIST1H2BK	46369	chr6:27106460:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0	ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,HIST1H2BK->chr6:27106073-27114619:-,histone_cluster_1,_H2bk	SNU869_BILIARY_TRACT	1	1	0.0131	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	63	1	0.05	0.0065	0.0131	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU869_BILIARY_TRACT	0.05	1	0.0196	FALSE	16	356	14	466	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	ATXN1L--BAHD1	1	1	ATXN1L	1114	chr16:71880007:+	BAHD1	22669	chr15:40756060:+	ONLY_REF_SPLICE	YES	10	23	0.17	0.08	0.0065	0.0065	ATXN1L->ataxin_1_like,chr16:71879894-71919171:+,BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+	SNU869_BILIARY_TRACT	0.08	0.17	0.013	TRUE	0	0	0	1	0	TRUE	ACH-000182
SNU869_BILIARY_TRACT	DHPS--HOOK2	1	1	DHPS	3446	chr19:12790271:-	HOOK2	21325	chr19:12878937:-	ONLY_REF_SPLICE	YES	64	17	0.03	0.11	0.0065	0.0065	LOCAL_REARRANGEMENT:-:[81101],DHPS->chr19:12786531-12792716:-,deoxyhypusine_synthase,HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2	SNU869_BILIARY_TRACT	0.03	0.11	0.013	TRUE	0	0	0	1	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	GIPC1--HN1L	1	1	GIPC1	3240	chr19:14602468:-	HN1L	16583	chr16:1735440:+	ONLY_REF_SPLICE	YES	151	58	0.01	0.03	0.0065	0.0065	GIPC1->GIPC_PDZ_domain_containing_family_member_1,chr19:14588572-14606944:-,HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like	SNU869_BILIARY_TRACT	0.01	0.03	0.013	FALSE	0	0	0	1	0	FALSE	ACH-000182
SNU869_BILIARY_TRACT	PARP14--TNPO1	1	1	PARP14	17782	chr3:122439235:+	TNPO1	34984	chr5:72161423:+	ONLY_REF_SPLICE	YES	181	50	0.01	0.04	0.0065	0.0065	PARP14->chr3:122399465-122449687:+,poly(ADP-ribose)_polymerase_family_member_14,TNPO1->chr5:72112139-72212560:+,transportin_1	SNU869_BILIARY_TRACT	0.01	0.04	0.013	FALSE	0	0	0	1	0	FALSE	ACH-000182
BT474_BREAST	THRA--AC090627.1	746	609	THRA	11793	chr17:38243106:+	AC090627.1	21568	chr17:46371709:+	ONLY_REF_SPLICE	YES	60	0	0.96	1	9.319	7.6076	THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha,AC090627.1->chr17:46371709-46386124:+	BT474_BREAST	0.96	1	16.9266	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	RPS6KB1--SNF8	487	244	RPS6KB1	1240	chr17:57970686:+	SNF8	26089	chr17:47021337:-	ONLY_REF_SPLICE	YES	203	761	0.78	0.49	6.0836	3.048	{Klijn_CCL:Breast=1},RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,SNF8->SNF8,_ESCRT-II_complex_subunit,chr17:47006678-47022479:-	BT474_BREAST	0.49	0.78	9.1316	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ACACA--STAC2	401	137	ACACA	66695	chr17:35479453:-	STAC2	81161	chr17:37374426:-	ONLY_REF_SPLICE	YES	354	0	0.6	1	5.0093	1.7114	{Klijn_CCL:Breast=1},ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,STAC2->SH3_and_cysteine_rich_domain_2,chr17:37366789-37382125:-	BT474_BREAST	0.6	1	6.7207	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ZMYND8--CEP250	290	314	ZMYND8	29057	chr20:45852970:-	CEP250	56963	chr20:34078463:+	ONLY_REF_SPLICE	YES	211	10	0.74	0.98	3.6227	3.9225	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,CEP250->centrosomal_protein_250,chr20:34042985-34099804:+	BT474_BREAST	0.74	0.98	7.5452	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	THRA--AC090627.1	278	209	THRA	11793	chr17:38243106:+	AC090627.1	23800	chr17:46384693:+	ONLY_REF_SPLICE	YES	60	187	0.89	0.72	3.4728	2.6108	THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha,AC090627.1->chr17:46371709-46386124:+	BT474_BREAST	0.72	0.89	6.0836	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	TOB1--SYNRG	279	28	TOB1	2782	chr17:48943419:-	SYNRG	37847	chr17:35880751:-	ONLY_REF_SPLICE	YES	14	207	0.96	0.6	3.4852	0.3498	TOB1->chr17:48939584-48945339:-,transducer_of_ERBB2,_1,SYNRG->chr17:35874900-35969544:-,synergin,_gamma	BT474_BREAST	0.6	0.96	3.835	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	STX16--RAE1	153	141	STX16	3048	chr20:57234690:+	RAE1	18335	chr20:55929088:+	ONLY_REF_SPLICE	YES	484	1493	0.38	0.16	1.9113	1.7614	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},STX16->chr20:57226328-57254582:+,syntaxin_16,RAE1->chr20:55926066-55954267:+,ribonucleic_acid_export_1	BT474_BREAST	0.16	0.38	3.6727	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	AHCTF1--NAAA	132	67	AHCTF1	1401	chr1:247094880:-	NAAA	50972	chr4:76846964:-	ONLY_REF_SPLICE	YES	27	116	0.88	0.63	1.6489	0.837	AHCTF1->AT-hook_containing_transcription_factor_1,chr1:247002400-247095280:-,NAAA->N-acylethanolamine_acid_amidase,chr4:76831809-76862204:-	BT474_BREAST	0.63	0.88	2.4859	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	STX16--RAE1	97	108	STX16	1816	chr20:57227143:+	RAE1	18335	chr20:55929088:+	ONLY_REF_SPLICE	YES	418	1493	0.33	0.12	1.2117	1.3491	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},STX16->chr20:57226328-57254582:+,syntaxin_16,RAE1->chr20:55926066-55954267:+,ribonucleic_acid_export_1	BT474_BREAST	0.12	0.33	2.5608	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	STARD3--DOK5	115	20	STARD3	1167	chr17:37793484:+	DOK5	23084	chr20:53259997:+	ONLY_REF_SPLICE	YES	298	0	0.31	1	1.4366	0.2498	STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+,DOK5->chr20:53092136-53267710:+,docking_protein_5	BT474_BREAST	0.31	1	1.6864	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MED1--ACSF2	105	38	MED1	6915	chr17:37595418:-	ACSF2	36449	chr17:48548389:+	ONLY_REF_SPLICE	YES	414	377	0.26	0.28	1.3117	0.4747	MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,ACSF2->acyl-CoA_synthetase_family_member_2,chr17:48503519-48552206:+	BT474_BREAST	0.26	0.28	1.7864	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MED1--STXBP4	99	45	MED1	1249	chr17:37607291:-	STXBP4	44835	chr17:53218671:+	ONLY_REF_SPLICE	YES	662	26	0.18	0.85	1.2367	0.5621	{Klijn_CCL:Breast=1},MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,STXBP4->chr17:53046088-53241646:+,syntaxin_binding_protein_4	BT474_BREAST	0.18	0.85	1.7988	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	RAB22A--MYO9B	96	28	RAB22A	2397	chr20:56886178:+	MYO9B	23218	chr19:17256207:+	ONLY_REF_SPLICE	YES	269	25	0.32	0.83	1.1992	0.3498	RAB22A->RAB22A,_member_RAS_oncogene_family,chr20:56884752-56942563:+,MYO9B->chr19:17186591-17325346:+,myosin_IXB	BT474_BREAST	0.32	0.83	1.549	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	TIMM23B--LINC00843	87	46	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0868	0.5746	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BT474_BREAST	0.99	1	1.6614	TRUE	508	994	45	981	0	FALSE	ACH-000927
BT474_BREAST	TRPC4AP--MRPL45	65	91	TRPC4AP	2387	chr20:33665849:-	MRPL45	31832	chr17:36478009:+	ONLY_REF_SPLICE	YES	547	1685	0.22	0.08	0.812	1.1368	{Klijn_CCL:Breast=1},TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45	BT474_BREAST	0.08	0.22	1.9488	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	GLB1--CMTM7	76	35	GLB1	23601	chr3:33055548:-	CMTM7	29734	chr3:32483332:+	ONLY_REF_SPLICE	YES	29	0	0.79	1	0.9494	0.4372	{Klijn_CCL:Breast=1},GLB1->Oncogene{Bushman},chr3:33038100-33138722:-,galactosidase_beta_1,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	BT474_BREAST	0.79	1	1.3866	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ZMYND8--CEP250	44	100	ZMYND8	29057	chr20:45852970:-	CEP250	57538	chr20:34079038:+	ONLY_REF_SPLICE	YES	211	91	0.41	0.61	0.5496	1.2492	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,CEP250->centrosomal_protein_250,chr20:34042985-34099804:+	BT474_BREAST	0.41	0.61	1.7988	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	VAPB--IKZF3	57	38	VAPB	1396	chr20:56964573:+	IKZF3	28254	chr17:37934020:-	ONLY_REF_SPLICE	YES	659	4	0.13	0.96	0.712	0.4747	{Klijn_CCL:Breast=1},VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	BT474_BREAST	0.13	0.96	1.1867	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	RPS6KB1--SNF8	3	246	RPS6KB1	1839	chr17:57971285:+	SNF8	26089	chr17:47021337:-	ONLY_REF_SPLICE	YES	225	761	0.53	0.25	0.0375	3.073	{Klijn_CCL:Breast=1},RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,SNF8->SNF8,_ESCRT-II_complex_subunit,chr17:47006678-47022479:-	BT474_BREAST	0.25	0.53	3.1105	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	TIMM23--RP11-464F9.1	56	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	197	7	0.22	0.89	0.6995	0.0125	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BT474_BREAST	0.22	0.89	0.712	TRUE	519	3926	326	965	0	FALSE	ACH-000927
BT474_BREAST	THRA--AC090627.1	3	209	THRA	11792	chr17:38243105:+	AC090627.1	23792	chr17:46384685:+	INCL_NON_REF_SPLICE	YES	60	202	0.78	0.51	0.0375	2.6108	THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha,AC090627.1->chr17:46371709-46386124:+	BT474_BREAST	0.51	0.78	2.6483	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	TRPC4AP--MRPL45	27	112	TRPC4AP	2387	chr20:33665849:-	MRPL45	30682	chr17:36476502:+	ONLY_REF_SPLICE	YES	547	1435	0.2	0.09	0.3373	1.3991	{Klijn_CCL:Breast=1},TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45	BT474_BREAST	0.09	0.2	1.7364	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	FAM102A--CIZ1	45	22	FAM102A	1522	chr9:130742271:-	CIZ1	22128	chr9:130948055:-	ONLY_REF_SPLICE	YES	208	248	0.24	0.21	0.5621	0.2748	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-	BT474_BREAST	0.21	0.24	0.8369	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	TRPC4AP--MRPL45	19	115	TRPC4AP	2387	chr20:33665849:-	MRPL45	29633	chr17:36474586:+	ONLY_REF_SPLICE	YES	547	1411	0.2	0.09	0.2373	1.4366	{Klijn_CCL:Breast=1},TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45	BT474_BREAST	0.09	0.2	1.6739	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	47	2	MT-ND4	1151	chrM:10910:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	NO	9895	301	0	0.14	0.5871	0.025	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.14	0.6121	FALSE	230	193	14	283	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	43	15	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3905	8	0.01	0.88	0.5372	0.1874	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0.01	0.88	0.7246	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	MED13--BCAS3	38	21	MED13	3547	chr17:60129898:-	BCAS3	91502	chr17:59465979:+	ONLY_REF_SPLICE	YES	32	54	0.65	0.52	0.4747	0.2623	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	BT474_BREAST	0.52	0.65	0.737	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND1--MT-RNR2	41	3	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	NO	51	145	0.46	0.23	0.5122	0.0375	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT474_BREAST	0.23	0.46	0.5497	FALSE	92	22	4	61	0	FALSE	ACH-000927
BT474_BREAST	MT-TA--MT-TC	40	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4997	0.05	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BT474_BREAST	1	1	0.5497	FALSE	462	80	0	856	0	FALSE	ACH-000927
BT474_BREAST	STX16--RAE1	10	122	STX16	1867	chr20:57227194:+	RAE1	18335	chr20:55929088:+	ONLY_REF_SPLICE	YES	488	1493	0.21	0.08	0.1249	1.524	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},STX16->chr20:57226328-57254582:+,syntaxin_16,RAE1->chr20:55926066-55954267:+,ribonucleic_acid_export_1	BT474_BREAST	0.08	0.21	1.6489	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	RPS6KB1--SNF8	1	152	RPS6KB1	1240	chr17:57970686:+	SNF8	27140	chr17:47018424:-	ONLY_REF_SPLICE	YES	203	804	0.43	0.16	0.0125	1.8988	{Klijn_CCL:Breast=1},RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,SNF8->SNF8,_ESCRT-II_complex_subunit,chr17:47006678-47022479:-	BT474_BREAST	0.16	0.43	1.9113	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	PPP1R12A--MGAT4C	34	19	PPP1R12A	1766	chr12:80328475:-	MGAT4C	44472	chr12:86829042:-	ONLY_REF_SPLICE	YES	87	0	0.38	1	0.4247	0.2373	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,MGAT4C->MGAT4_family_member_C,chr12:86372516-87232681:-	BT474_BREAST	0.38	1	0.662	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	VAPB--IKZF3	33	19	VAPB	1396	chr20:56964573:+	IKZF3	29371	chr17:37922746:-	ONLY_REF_SPLICE	YES	659	14	0.07	0.79	0.4122	0.2373	{Klijn_CCL:Breast=1},VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	BT474_BREAST	0.07	0.79	0.6495	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ASTN2--RP11-281A20.1	32	19	ASTN2	2762	chr9:120053605:-	RP11-281A20.1	38824	chr9:120632505:-	ONLY_REF_SPLICE	YES	13	0	0.8	1	0.3997	0.2373	ASTN2->Oncogene{Bushman},astrotactin_2,chr9:119187504-120177348:-,RP11-281A20.1->chr9:120602600-120659534:-	BT474_BREAST	0.8	1	0.637	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	28	34	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	8	0	0.89	1	0.3498	0.4247	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0.89	1	0.7745	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	SKA2--MYO19	34	4	SKA2	1139	chr17:57232492:-	MYO19	29671	chr17:34863351:-	ONLY_REF_SPLICE	YES	33	212	0.54	0.15	0.4247	0.05	{Klijn_CCL:Breast=1},SKA2->chr17:57187312-57232630:-,spindle_and_kinetochore_associated_complex_subunit_2,MYO19->chr17:34851477-34899284:-,myosin_XIX	BT474_BREAST	0.15	0.54	0.4747	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND4--MT-ND4L	9	95	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	44	0	0.7	1	0.1124	1.1867	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT474_BREAST	0.7	1	1.2991	FALSE	344	826	44	306	0	FALSE	ACH-000927
BT474_BREAST	MT-ND6--MT-TE	30	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3748	0.0125	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT474_BREAST	1	1	0.3873	FALSE	499	1288	110	792	0	FALSE	ACH-000927
BT474_BREAST	PIP4K2B--RAD51C	25	18	PIP4K2B	9121	chr17:36933940:-	RAD51C	31035	chr17:56809845:+	ONLY_REF_SPLICE	YES	602	210	0.07	0.17	0.3123	0.2249	PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta,RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+	BT474_BREAST	0.07	0.17	0.5372	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	USP32--MED1	26	10	USP32	4918	chr17:58422842:-	MED1	47257	chr17:37604157:-	ONLY_REF_SPLICE	YES	121	711	0.23	0.05	0.3248	0.1249	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1	BT474_BREAST	0.05	0.23	0.4497	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND4--MT-ND4L	3	98	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	18	2	0.85	0.98	0.0375	1.2242	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT474_BREAST	0.85	0.98	1.2617	FALSE	344	826	44	306	0	FALSE	ACH-000927
BT474_BREAST	TRIM37--MYO19	25	2	TRIM37	7217	chr17:57161363:-	MYO19	52593	chr17:34863763:-	ONLY_REF_SPLICE	YES	261	288	0.09	0.09	0.3123	0.025	{Klijn_CCL:Breast=1},TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,MYO19->chr17:34851477-34899284:-,myosin_XIX	BT474_BREAST	0.09	0.09	0.3373	TRUE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	FITM2--UQCC1	19	21	FITM2	1194	chr20:42939616:-	UQCC1	25551	chr20:33902568:-	ONLY_REF_SPLICE	YES	95	230	0.3	0.15	0.2373	0.2623	FITM2->chr20:42931478-42939809:-,fat_storage_inducing_transmembrane_protein_2,UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1	BT474_BREAST	0.15	0.3	0.4996	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	PIP4K2B--RAD51C	19	19	PIP4K2B	9121	chr17:36933940:-	RAD51C	29822	chr17:56801401:+	ONLY_REF_SPLICE	YES	602	240	0.06	0.14	0.2373	0.2373	PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta,RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+	BT474_BREAST	0.06	0.14	0.4746	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	AHCTF1--NAAA	5	74	AHCTF1	1850	chr1:247094431:-	NAAA	50972	chr4:76846964:-	ONLY_REF_SPLICE	YES	42	116	0.65	0.41	0.0625	0.9244	AHCTF1->AT-hook_containing_transcription_factor_1,chr1:247002400-247095280:-,NAAA->N-acylethanolamine_acid_amidase,chr4:76831809-76862204:-	BT474_BREAST	0.41	0.65	0.9869	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	22	4	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	9895	0	0	1	0.2748	0.05	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	1	0.3248	FALSE	230	193	14	283	0	FALSE	ACH-000927
BT474_BREAST	MEF2D--OR10J1	18	18	MEF2D	8161	chr1:156449082:-	OR10J1	20349	chr1:159409566:+	INCL_NON_REF_SPLICE	YES	36	0	0.5	1	0.2249	0.2249	MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,OR10J1->chr1:159409512-159410600:+,olfactory_receptor_family_10_subfamily_J_member_1	BT474_BREAST	0.5	1	0.4498	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	VAPB--IKZF3	12	41	VAPB	1396	chr20:56964573:+	IKZF3	26679	chr17:37944627:-	ONLY_REF_SPLICE	YES	659	3	0.07	0.95	0.1499	0.5122	{Klijn_CCL:Breast=1},VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	BT474_BREAST	0.07	0.95	0.6621	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	DIDO1--TTI1	21	3	DIDO1	1157	chr20:61569148:-	TTI1	34646	chr20:36634799:-	ONLY_REF_SPLICE	YES	9	72	0.73	0.25	0.2623	0.0375	DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-	BT474_BREAST	0.25	0.73	0.2998	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	SKA2--MYO19	19	5	SKA2	1139	chr17:57232492:-	MYO19	29259	chr17:34863763:-	ONLY_REF_SPLICE	YES	33	288	0.42	0.08	0.2373	0.0625	{Klijn_CCL:Breast=1},SKA2->chr17:57187312-57232630:-,spindle_and_kinetochore_associated_complex_subunit_2,MYO19->chr17:34851477-34899284:-,myosin_XIX	BT474_BREAST	0.08	0.42	0.2998	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	DIDO1--TTI1	19	4	DIDO1	1157	chr20:61569148:-	TTI1	31303	chr20:36642259:-	ONLY_REF_SPLICE	YES	9	4	0.72	0.85	0.2373	0.05	DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-	BT474_BREAST	0.72	0.85	0.2873	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND4--MT-ND4L	5	60	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	0	0.92	1	0.0625	0.7495	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT474_BREAST	0.92	1	0.812	FALSE	344	821	44	306	0	FALSE	ACH-000927
BT474_BREAST	TPM4--SYCE2	16	15	TPM4	10590	chr19:16199930:+	SYCE2	23976	chr19:13015480:-	ONLY_REF_SPLICE	YES	397	8	0.07	0.79	0.1999	0.1874	TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4,SYCE2->chr19:13009600-13030090:-,synaptonemal_complex_central_element_protein_2	BT474_BREAST	0.07	0.79	0.3873	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	18	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	12331	4	0	0.84	0.2249	0.0375	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.84	0.2624	FALSE	230	193	14	283	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ND4L	3	62	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	17	0	0.79	1	0.0375	0.7745	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT474_BREAST	0.79	1	0.812	FALSE	344	826	44	306	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	13	22	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	8	545	0.81	0.06	0.1624	0.2748	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0.06	0.81	0.4372	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	NPM1P24--SET	18	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2249	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BT474_BREAST	1	1	0.2249	TRUE	0	0	0	434	0	FALSE	ACH-000927
BT474_BREAST	AHCTF1--NAAA	10	30	AHCTF1	1401	chr1:247094880:-	NAAA	52049	chr4:76842276:-	ONLY_REF_SPLICE	YES	27	141	0.6	0.22	0.1249	0.3748	AHCTF1->AT-hook_containing_transcription_factor_1,chr1:247002400-247095280:-,NAAA->N-acylethanolamine_acid_amidase,chr4:76831809-76862204:-	BT474_BREAST	0.22	0.6	0.4997	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	HSP90AB1--MT-RNR2	16	6	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3366	0	0.01	1	0.1999	0.075	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT474_BREAST	0.01	1	0.2749	FALSE	13	9	0	364	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ND4L	5	50	MT-ND4	1503	chrM:11262:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	564	0	0.09	1	0.0625	0.6246	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT474_BREAST	0.09	1	0.6871	FALSE	344	827	44	306	0	FALSE	ACH-000927
BT474_BREAST	SKA2--MYO19	13	16	SKA2	1314	chr17:57232317:-	MYO19	29671	chr17:34863351:-	ONLY_REF_SPLICE	YES	272	212	0.1	0.12	0.1624	0.1999	{Klijn_CCL:Breast=1},SKA2->chr17:57187312-57232630:-,spindle_and_kinetochore_associated_complex_subunit_2,MYO19->chr17:34851477-34899284:-,myosin_XIX	BT474_BREAST	0.1	0.12	0.3623	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	TRIM37--MYO19	16	1	TRIM37	7217	chr17:57161363:-	MYO19	53005	chr17:34863351:-	ONLY_REF_SPLICE	YES	261	212	0.06	0.07	0.1999	0.0125	{Klijn_CCL:Breast=1},TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,MYO19->chr17:34851477-34899284:-,myosin_XIX	BT474_BREAST	0.06	0.07	0.2124	TRUE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	CPNE1--PI3	12	16	CPNE1	3826	chr20:34243124:-	PI3	14948	chr20:43804502:+	ONLY_REF_SPLICE	YES	72	1	0.28	0.97	0.1499	0.1999	CPNE1->chr20:34213953-34252878:-,copine_1,PI3->chr20:43803517-43805185:+,peptidase_inhibitor_3	BT474_BREAST	0.28	0.97	0.3498	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	7	36	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0874	0.4497	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	1	1	0.5371	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ND4L	3	50	MT-ND4	1058	chrM:10817:+	MT-ND4L	5526	chrM:10617:+	INCL_NON_REF_SPLICE	NO	4	0	0.93	1	0.0375	0.6246	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT474_BREAST	0.93	1	0.6621	FALSE	344	821	44	306	0	FALSE	ACH-000927
BT474_BREAST	PIP4K2B--RAD51C	11	18	PIP4K2B	9121	chr17:36933940:-	RAD51C	31032	chr17:56809842:+	ONLY_REF_SPLICE	YES	602	220	0.05	0.12	0.1374	0.2249	PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta,RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+	BT474_BREAST	0.05	0.12	0.3623	TRUE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	BRD4--RFX1	15	0	BRD4	1256	chr19:15443101:-	RFX1	33748	chr19:14104707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1874	0	BRD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},bromodomain_containing_4,chr19:15347647-15443356:-,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	BT474_BREAST	1	1	0.1874	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	FAM102A--CIZ1	9	23	FAM102A	1522	chr9:130742271:-	CIZ1	21056	chr9:130950213:-	ONLY_REF_SPLICE	YES	208	218	0.13	0.13	0.1124	0.2873	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-	BT474_BREAST	0.13	0.13	0.3997	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	14	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12383	7	0	0.71	0.1749	0.0375	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.71	0.2124	FALSE	230	198	14	283	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	11	13	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6490	90	0	0.21	0.1374	0.1624	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.21	0.2998	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-CO3	8	25	MT-ND5	2667	chrM:14003:+	MT-CO3	5959	chrM:9353:+	INCL_NON_REF_SPLICE	YES	1562	8284	0.02	0	0.0999	0.3123	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BT474_BREAST	0	0.02	0.4122	FALSE	0	15	2	18	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	3	43	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0.5372	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	1	1	0.5747	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	LAMP1--MCF2L	13	1	LAMP1	1255	chr13:113951810:+	MCF2L	46545	chr13:113718618:+	ONLY_REF_SPLICE	YES	11	84	0.56	0.14	0.1624	0.0125	LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1,MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+	BT474_BREAST	0.14	0.56	0.1749	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	4	36	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0.4497	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	1	1	0.4997	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	MED13--BCAS3	10	11	MED13	3547	chr17:60129898:-	BCAS3	94861	chr17:59469338:+	ONLY_REF_SPLICE	YES	32	62	0.4	0.25	0.1249	0.1374	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	BT474_BREAST	0.25	0.4	0.2623	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND6--MT-TE	12	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.1499	0.0375	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT474_BREAST	0.88	1	0.1874	FALSE	499	1288	110	792	0	FALSE	ACH-000927
BT474_BREAST	NCOA2--ZNF704	12	3	NCOA2	1106	chr8:71315935:-	ZNF704	38754	chr8:81733850:-	ONLY_REF_SPLICE	YES	4	14	0.79	0.52	0.1499	0.0375	NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,ZNF704->chr8:81540686-81787016:-,zinc_finger_protein_704	BT474_BREAST	0.52	0.79	0.1874	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ZFP64--PHACTR3	10	11	ZFP64	8337	chr20:50776662:-	PHACTR3	32066	chr20:58318162:+	ONLY_REF_SPLICE	YES	86	0	0.2	1	0.1249	0.1374	ZFP64->Oncogene{Bushman},ZFP64_zinc_finger_protein,chr20:50668202-50820847:-,PHACTR3->chr20:58152564-58422766:+,phosphatase_and_actin_regulator_3	BT474_BREAST	0.2	1	0.2623	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	4	34	MT-ND5	2749	chrM:14085:+	MT-ATP8	5896	chrM:8449:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.05	0.4247	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0.97	1	0.4747	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	5	30	MT-ND5	2667	chrM:14003:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1563	0	0.02	1	0.0625	0.3748	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0.02	1	0.4373	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	MT-ND1--MT-RNR2	3	36	MT-ND1	1435	chrM:3741:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	66	0	0.37	1	0.0375	0.4497	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT474_BREAST	0.37	1	0.4872	FALSE	114	26	4	85	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	3	36	MT-ND5	2820	chrM:14156:+	MT-ATP8	5883	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0.4497	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	1	1	0.4872	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	MT-ND1--MT-RNR2	5	27	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	12	0	0.73	1	0.0625	0.3373	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT474_BREAST	0.73	1	0.3998	FALSE	114	26	4	85	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	11	3	MT-ND4	1152	chrM:10911:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	9924	3	0	0.82	0.1374	0.0375	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.82	0.1749	FALSE	230	193	14	283	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	6	23	MT-ND5	2687	chrM:14023:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	845	8	0.03	0.78	0.075	0.2873	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0.03	0.78	0.3623	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	SKA2--MYO19	6	22	SKA2	1314	chr17:57232317:-	MYO19	29259	chr17:34863763:-	ONLY_REF_SPLICE	YES	272	288	0.09	0.09	0.075	0.2748	{Klijn_CCL:Breast=1},SKA2->chr17:57187312-57232630:-,spindle_and_kinetochore_associated_complex_subunit_2,MYO19->chr17:34851477-34899284:-,myosin_XIX	BT474_BREAST	0.09	0.09	0.3498	TRUE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	5	24	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	26	0	0.53	1	0.0625	0.2998	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0.53	1	0.3623	FALSE	213	207	15	279	0	FALSE	ACH-000927
BT474_BREAST	MT-TA--MT-TC	10	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1249	0.05	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BT474_BREAST	1	1	0.1749	FALSE	462	80	0	856	0	FALSE	ACH-000927
BT474_BREAST	RP11-123O10.4--GRIP1	10	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1249	0.05	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BT474_BREAST	1	1	0.1749	FALSE	416	2512	207	587	0	FALSE	ACH-000927
BT474_BREAST	RP11-96H19.1--RP11-446N19.1	9	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.94	0.94	0.1124	0.0999	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BT474_BREAST	0.94	0.94	0.2123	FALSE	515	4851	409	746	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	6	19	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	2901	1	0.01	0.96	0.075	0.2373	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0.01	0.96	0.3123	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-CO3	3	31	MT-ND5	2797	chrM:14133:+	MT-CO3	5963	chrM:9357:+	INCL_NON_REF_SPLICE	YES	0	8822	1	0	0.0375	0.3872	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BT474_BREAST	0	1	0.4247	FALSE	0	15	2	17	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	8	10	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	14617	7	0	0.72	0.0999	0.1249	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.72	0.2248	FALSE	231	217	16	283	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ND4L	4	26	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	11616	0	0	1	0.05	0.3248	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT474_BREAST	0	1	0.3748	FALSE	328	800	43	304	0	FALSE	ACH-000927
BT474_BREAST	MT-ND1--MT-RNR2	3	27	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	12	0	0.71	1	0.0375	0.3373	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT474_BREAST	0.71	1	0.3748	FALSE	114	26	4	85	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	9	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12331	7	0	0.63	0.1124	0.0375	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.63	0.1499	FALSE	230	193	14	283	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	3	27	MT-ND5	2712	chrM:14048:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	YES	25	3	0.55	0.91	0.0375	0.3373	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0.55	0.91	0.3748	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	FCHSD2--LRTOMT	8	6	FCHSD2	10623	chr11:72695133:-	LRTOMT	31134	chr11:71799343:+	ONLY_REF_SPLICE	YES	19	8	0.42	0.64	0.0999	0.075	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,LRTOMT->chr11:71791382-71821828:+,leucine_rich_transmembrane_and_O-methyltransferase_domain_containing	BT474_BREAST	0.42	0.64	0.1749	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	HSP90AB1--MT-RNR2	8	6	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3342	0	0	1	0.0999	0.075	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT474_BREAST	0	1	0.1749	FALSE	13	9	0	364	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ND4L	5	16	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	31	0	0.4	1	0.0625	0.1999	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT474_BREAST	0.4	1	0.2624	FALSE	344	826	44	306	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ND4L	6	10	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	49	0	0.25	1	0.075	0.1249	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT474_BREAST	0.25	1	0.1999	FALSE	344	827	44	306	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	3	21	MT-ND5	2167	chrM:13503:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	4964	0	0	1	0.0375	0.2623	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	1	0.2998	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	4	17	MT-ND5	1898	chrM:13234:+	MT-ATP8	5824	chrM:8377:+	INCL_NON_REF_SPLICE	YES	5609	0	0	1	0.05	0.2124	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	1	0.2624	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	AC131097.3--AC093642.5	7	4	AC131097.3	2273	chr2:242824786:+	AC093642.5	12811	chr2:243056790:+	ONLY_REF_SPLICE	YES	3	32	0.79	0.26	0.0874	0.05	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	BT474_BREAST	0.26	0.79	0.1374	FALSE	2	37	1	16	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	4	16	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	14610	0	0	1	0.05	0.1999	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	1	0.2499	FALSE	231	217	16	283	0	FALSE	ACH-000927
BT474_BREAST	RPRD1B--GID8	8	0	RPRD1B	8294	chr20:36694658:+	GID8	18950	chr20:61572843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0999	0	RPRD1B->chr20:36661948-36720768:+,regulation_of_nuclear_pre-mRNA_domain_containing_1B,GID8->GID_complex_subunit_8_homolog,chr20:61569471-61576996:+	BT474_BREAST	1	1	0.0999	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	5	11	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13563	89	0	0.15	0.0625	0.1374	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.15	0.1999	FALSE	231	217	16	283	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	7	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14345	7	0	0.59	0.0874	0.0375	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.59	0.1249	FALSE	231	205	14	283	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ND4L	3	19	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.92	0.0375	0.2373	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT474_BREAST	0.92	1	0.2748	FALSE	344	821	44	306	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ND4L	3	18	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	6	0	0.78	1	0.0375	0.2249	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT474_BREAST	0.78	1	0.2624	FALSE	344	821	44	306	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ND4L	3	17	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	37	0	0.35	1	0.0375	0.2124	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT474_BREAST	0.35	1	0.2499	FALSE	344	826	44	306	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	3	17	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	4329	0	0	1	0.0375	0.2124	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	1	0.2499	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-CO3	4	13	MT-ND5	2591	chrM:13927:+	MT-CO3	6171	chrM:9565:+	INCL_NON_REF_SPLICE	YES	3069	18558	0.01	0	0.05	0.1624	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BT474_BREAST	0	0.01	0.2124	FALSE	0	15	2	18	0	FALSE	ACH-000927
BT474_BREAST	MT-ND6--MT-TE	7	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0874	0.0125	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT474_BREAST	1	1	0.0999	FALSE	499	1288	110	792	0	FALSE	ACH-000927
BT474_BREAST	ACSF2--DHX40P1	7	0	ACSF2	11249	chr17:48548496:+	DHX40P1	23755	chr17:58066705:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0874	0	ACSF2->acyl-CoA_synthetase_family_member_2,chr17:48503519-48552206:+,DHX40P1->DEAH-box_helicase_40_pseudogene_1,chr17:58053370-58079745:-	BT474_BREAST	1	1	0.0874	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ERBB2--RPL8	7	0	ERBB2	20479	chr17:37879629:+	RPL8	30885	chr8:146017257:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0874	0	GTEx&tcga_normals:1/3694=0.03%,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,RPL8->chr8:146015150-146017972:-,ribosomal_protein_L8	BT474_BREAST	1	1	0.0874	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0874	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	BT474_BREAST	1	1	0.0874	TRUE	1	39	0	134	39	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	5	8	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	15891	0	0	1	0.0625	0.0999	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	1	0.1624	FALSE	231	217	16	283	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	4	12	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	3413	1162	0	0.01	0.05	0.1499	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.01	0.1999	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	CPNE1--PI3	2	19	CPNE1	4976	chr20:34241450:-	PI3	14948	chr20:43804502:+	ONLY_REF_SPLICE	YES	76	1	0.22	0.95	0.025	0.2373	CPNE1->chr20:34213953-34252878:-,copine_1,PI3->chr20:43803517-43805185:+,peptidase_inhibitor_3	BT474_BREAST	0.22	0.95	0.2623	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	4	11	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13596	89	0	0.14	0.05	0.1374	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.14	0.1874	FALSE	231	217	16	283	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-CO3	4	11	MT-ND5	2805	chrM:14141:+	MT-CO3	6211	chrM:9605:+	INCL_NON_REF_SPLICE	YES	0	17475	1	0	0.05	0.1374	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BT474_BREAST	0	1	0.1874	FALSE	0	15	2	17	0	FALSE	ACH-000927
BT474_BREAST	FAM102A--CIZ1	5	6	FAM102A	1522	chr9:130742271:-	CIZ1	23373	chr9:130943078:-	ONLY_REF_SPLICE	YES	208	382	0.05	0.03	0.0625	0.075	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-	BT474_BREAST	0.03	0.05	0.1375	TRUE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ND4L	4	10	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	44	0	0.24	1	0.05	0.1249	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT474_BREAST	0.24	1	0.1749	FALSE	344	826	44	306	0	FALSE	ACH-000927
BT474_BREAST	PPP1R9A--WDR66	6	2	PPP1R9A	9499	chr7:94827796:+	WDR66	57608	chr12:122404861:+	ONLY_REF_SPLICE	YES	17	1	0.32	0.89	0.075	0.025	PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A,WDR66->WD_repeat_domain_66,chr12:122355768-122441833:+	BT474_BREAST	0.32	0.89	0.1	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	BRD4--RFX1	6	0	BRD4	1256	chr19:15443101:-	RFX1	35119	chr19:14094407:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.075	0	BRD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},bromodomain_containing_4,chr19:15347647-15443356:-,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	BT474_BREAST	1	1	0.075	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	4	8	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	15624	0	0	1	0.05	0.0999	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	1	0.1499	FALSE	231	217	16	283	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	3	12	MT-ND5	2455	chrM:13791:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	2922	545	0.01	0.03	0.0375	0.1499	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0.01	0.03	0.1874	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.075	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BT474_BREAST	1	1	0.075	FALSE	462	80	0	856	0	FALSE	ACH-000927
BT474_BREAST	CTD-2319I12.2--HEATR6	4	7	CTD-2319I12.2	1164	chr17:58156833:+	HEATR6	17130	chr17:58136882:-	ONLY_REF_SPLICE	YES	0	90	1	0.11	0.05	0.0874	LOCAL_INVERSION:+:-:[378],CTD-2319I12.2->chr17:58156670-58166056:+,HEATR6->HEAT_repeat_containing_6,chr17:58120555-58156292:-	BT474_BREAST	0.11	1	0.1374	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	CYP4F8--ILVBL	5	3	CYP4F8	7778	chr19:15734904:+	ILVBL	19338	chr19:15230892:-	ONLY_REF_SPLICE	YES	0	299	1	0.03	0.0625	0.0375	CYP4F8->chr19:15726029-15741448:+,cytochrome_P450_family_4_subfamily_F_member_8,ILVBL->chr19:15225795-15236596:-,ilvB_(bacterial_acetolactate_synthase)-like	BT474_BREAST	0.03	1	0.1	TRUE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	3	11	MT-ND5	1795	chrM:13131:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	NO	3820	1	0	0.93	0.0375	0.1374	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.93	0.1749	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	3	11	MT-ND5	1789	chrM:13125:+	MT-ATP8	5881	chrM:8434:+	INCL_NON_REF_SPLICE	YES	3731	0	0	1	0.0375	0.1374	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	1	0.1749	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	CPNE1--PI3	4	6	CPNE1	2683	chr20:34246852:-	PI3	14948	chr20:43804502:+	ONLY_REF_SPLICE	YES	129	1	0.07	0.91	0.05	0.075	CPNE1->chr20:34213953-34252878:-,copine_1,PI3->chr20:43803517-43805185:+,peptidase_inhibitor_3	BT474_BREAST	0.07	0.91	0.125	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	3	10	MT-ND4	2261	chrM:12020:+	MT-ATP8	5496	chrM:8483:+	INCL_NON_REF_SPLICE	YES	1466	662	0.01	0.02	0.0375	0.1249	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0.01	0.02	0.1624	FALSE	216	209	16	281	0	FALSE	ACH-000927
BT474_BREAST	RBM38--MT-CO3	5	2	RBM38	5190	chr20:55982820:+	MT-CO3	9819	chrM:9266:+	INCL_NON_REF_SPLICE	YES	927	1	0.01	0.88	0.0625	0.025	RBM38->RNA_binding_motif_protein_38,chr20:55966463-55984389:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BT474_BREAST	0.01	0.88	0.0875	FALSE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	ERBB2IP--NLN	5	1	ERBB2IP	22514	chr5:65346794:+	NLN	43303	chr5:65073254:+	ONLY_REF_SPLICE	YES	43	83	0.12	0.07	0.0625	0.0125	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_REARRANGEMENT:+:[54750],ERBB2IP->chr5:65222303-65378377:+,NLN->chr5:65018023-65167553:+,neurolysin	BT474_BREAST	0.07	0.12	0.075	TRUE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	4	5	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	14388	1573	0	0.01	0.05	0.0625	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.01	0.1125	FALSE	231	217	16	283	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	3	9	MT-ND5	1795	chrM:13131:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3820	8	0	0.6	0.0375	0.1124	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.6	0.1499	FALSE	43	37	8	105	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	4	4	MT-ND4	1164	chrM:10923:+	MT-ATP8	5389	chrM:8376:+	INCL_NON_REF_SPLICE	YES	10205	0	0	1	0.05	0.05	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	1	0.1	FALSE	230	193	14	283	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ND4L	5	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT474_BREAST	1	1	0.0625	FALSE	344	821	44	306	0	FALSE	ACH-000927
BT474_BREAST	MT-ND6--MT-TE	4	4	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.05	0.05	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT474_BREAST	0.8	1	0.1	FALSE	499	1288	110	792	0	FALSE	ACH-000927
BT474_BREAST	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT474_BREAST	1	1	0.0625	FALSE	499	1288	110	792	0	FALSE	ACH-000927
BT474_BREAST	PIP4K2B--RAD51C	2	12	PIP4K2B	9121	chr17:36933940:-	RAD51C	32318	chr17:56811479:+	ONLY_REF_SPLICE	YES	602	181	0.02	0.07	0.025	0.1499	PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta,RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+	BT474_BREAST	0.02	0.07	0.1749	TRUE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	ERN1--TBC1D3B	4	3	ERN1	4189	chr17:62175481:-	TBC1D3B	42200	chr17:34493943:-	ONLY_REF_SPLICE	YES	8	227	0.47	0.03	0.05	0.0375	ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1,TBC1D3B->TBC1_domain_family_member_3B,chr17:34493061-34503996:-	BT474_BREAST	0.03	0.47	0.0875	TRUE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	MT-ND1--MT-RNR2	4	3	MT-ND1	1235	chrM:3541:+	MT-RNR2	5565	chrM:2279:+	INCL_NON_REF_SPLICE	YES	10	12312	0.41	0	0.05	0.0375	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT474_BREAST	0	0.41	0.0875	FALSE	120	26	5	87	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	3	7	MT-ND4	1645	chrM:11404:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16288	89	0	0.1	0.0375	0.0874	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.1	0.1249	FALSE	231	217	16	283	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	3	7	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17046	89	0	0.1	0.0375	0.0874	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.1	0.1249	FALSE	231	217	16	283	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ND4L	3	7	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	10	0	0.5	1	0.0375	0.0874	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT474_BREAST	0.5	1	0.1249	FALSE	344	826	44	306	0	FALSE	ACH-000927
BT474_BREAST	FTH1--ACTB	4	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	244	1	0.02	0.86	0.05	0.025	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	BT474_BREAST	0.02	0.86	0.075	TRUE	1	0	0	97	0	FALSE	ACH-000927
BT474_BREAST	GABRB3--RYR3	4	2	GABRB3	26941	chr15:26790011:-	RYR3	53918	chr15:33920672:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0.025	GABRB3->chr15:26788693-27184686:-,gamma-aminobutyric_acid_type_A_receptor_beta3_subunit,RYR3->chr15:33603163-34158303:+,ryanodine_receptor_3	BT474_BREAST	1	1	0.075	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	KAT6A--PLAT	3	6	KAT6A	3420	chr8:41905896:-	PLAT	45584	chr8:42038203:-	ONLY_REF_SPLICE	YES	35	2	0.2	0.82	0.0375	0.075	KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A,PLAT->chr8:42032236-42065242:-,plasminogen_activator,_tissue_type	BT474_BREAST	0.2	0.82	0.1125	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND1--MT-RNR2	3	6	MT-ND1	1409	chrM:3715:+	MT-RNR2	5520	chrM:2234:+	INCL_NON_REF_SPLICE	YES	51	12651	0.15	0	0.0375	0.075	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT474_BREAST	0	0.15	0.1125	FALSE	120	26	5	87	0	FALSE	ACH-000927
BT474_BREAST	MT-ND1--MT-RNR2	3	6	MT-ND1	1291	chrM:3597:+	MT-RNR2	4993	chrM:1707:+	INCL_NON_REF_SPLICE	YES	16	0	0.36	1	0.0375	0.075	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT474_BREAST	0.36	1	0.1125	FALSE	114	26	4	85	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-CO3	4	2	MT-ND5	1389	chrM:12725:+	MT-CO3	5971	chrM:9365:+	INCL_NON_REF_SPLICE	YES	6947	10029	0	0	0.05	0.025	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BT474_BREAST	0	0	0.075	FALSE	0	7	0	11	0	FALSE	ACH-000927
BT474_BREAST	RP11-96H19.1--RP11-446N19.1	2	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.025	0.1249	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BT474_BREAST	0.92	1	0.1499	FALSE	275	511	55	178	0	FALSE	ACH-000927
BT474_BREAST	BRD4--RFX1	4	1	BRD4	1710	chr19:15442647:-	RFX1	32548	chr19:14109129:-	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.05	0.0125	BRD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},bromodomain_containing_4,chr19:15347647-15443356:-,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	BT474_BREAST	0.83	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-TA--MT-TC	3	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0.0625	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BT474_BREAST	1	1	0.1	FALSE	462	80	0	856	0	FALSE	ACH-000927
BT474_BREAST	DYNLRB1--PPIA	4	0	DYNLRB1	5939	chr20:33122456:+	PPIA	11303	chr7:44836329:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0	DYNLRB1->chr20:33104214-33128762:+,dynein_light_chain_roadblock-type_1,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	BT474_BREAST	1	1	0.05	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	3	4	MT-ND4	1220	chrM:10979:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	12505	0	0	1	0.0375	0.05	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	1	0.0875	FALSE	231	204	14	283	0	FALSE	ACH-000927
BT474_BREAST	MT-ND5--MT-ATP8	4	0	MT-ND5	1155	chrM:12491:+	MT-ATP8	5893	chrM:8446:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	1	1	0.05	FALSE	41	30	6	101	0	FALSE	ACH-000927
BT474_BREAST	MT-ND1--MT-RNR2	3	3	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	11	12101	0.35	0	0.0375	0.0375	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT474_BREAST	0	0.35	0.075	FALSE	120	26	5	87	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	7258	0	0	1	0.0375	0.025	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	1	0.0625	FALSE	230	193	14	283	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	NO	12617	544	0	0.01	0.0375	0.025	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.01	0.0625	FALSE	231	204	14	283	0	FALSE	ACH-000927
BT474_BREAST	CEP250--GDF5	3	1	CEP250	34596	chr20:34097883:+	GDF5	43419	chr20:34022581:-	ONLY_REF_SPLICE	YES	341	11	0.01	0.27	0.0375	0.0125	LOCAL_INVERSION:+:-:[417],CEP250->centrosomal_protein_250,chr20:34042985-34099804:+,GDF5->chr20:34021145-34042568:-,growth_differentiation_factor_5	BT474_BREAST	0.01	0.27	0.05	FALSE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	MEF2D--RP11-180D21.3	3	1	MEF2D	8161	chr1:156449082:-	RP11-180D21.3	21598	chr1:159437870:+	ONLY_REF_SPLICE	YES	36	0	0.1	1	0.0375	0.0125	MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,RP11-180D21.3->chr1:159436111-159453166:+	BT474_BREAST	0.1	1	0.05	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MT-ND4--MT-ATP8	3	1	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	2497	2	0	0.67	0.0375	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT474_BREAST	0	0.67	0.05	FALSE	230	191	14	283	0	FALSE	ACH-000927
BT474_BREAST	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	1	1	0.91	0.0125	0.1124	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BT474_BREAST	0.91	1	0.1249	FALSE	467	2173	244	435	0	FALSE	ACH-000927
BT474_BREAST	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT474_BREAST	1	1	0.0375	FALSE	344	821	44	306	0	FALSE	ACH-000927
BT474_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT474_BREAST	1	1	0.0375	FALSE	499	1288	110	792	0	FALSE	ACH-000927
BT474_BREAST	MT-TA--MT-TY	3	0	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BT474_BREAST	1	1	0.0375	FALSE	13	214	14	42	0	FALSE	ACH-000927
BT474_BREAST	MT-TA--MT-TY	3	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BT474_BREAST	1	1	0.0375	FALSE	13	214	14	42	0	FALSE	ACH-000927
BT474_BREAST	NCOR2--UBC	3	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0375	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	BT474_BREAST	1	1	0.0375	TRUE	145	312	16	51	0	FALSE	ACH-000927
BT474_BREAST	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BT474_BREAST	1	1	0.0375	TRUE	0	0	0	434	0	FALSE	ACH-000927
BT474_BREAST	THRA--AC090627.1	1	7	THRA	11793	chr17:38243106:+	AC090627.1	24402	chr17:46385295:+	ONLY_REF_SPLICE	YES	60	145	0.12	0.05	0.0125	0.0874	THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha,AC090627.1->chr17:46371709-46386124:+	BT474_BREAST	0.05	0.12	0.0999	TRUE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	AC131097.3--AC093642.5	2	1	AC131097.3	2273	chr2:242824786:+	AC093642.5	15104	chr2:243061116:+	ONLY_REF_SPLICE	YES	3	28	0.5	0.1	0.025	0.0125	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	BT474_BREAST	0.1	0.5	0.0375	FALSE	0	3	0	4	0	FALSE	ACH-000927
BT474_BREAST	C11orf84--MYEOV	2	1	C11orf84	1426	chr11:63581285:+	MYEOV	17675	chr11:69156278:+	ONLY_REF_SPLICE	YES	126	0	0.02	1	0.025	0.0125	C11orf84->chr11:63580860-63595190:+,chromosome_11_open_reading_frame_84,MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed	BT474_BREAST	0.02	1	0.0375	TRUE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	RP11-245P10.4--ASH1L	2	1	RP11-245P10.4	1098	chr1:228595179:+	ASH1L	7912	chr1:155491409:-	ONLY_REF_SPLICE	YES	0	22	1	0.12	0.025	0.0125	RP11-245P10.4->chr1:228595082-228597395:+,ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-	BT474_BREAST	0.12	1	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	AATF--UBE3C	2	0	AATF	4553	chr17:35311207:+	UBE3C	39554	chr7:157015948:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	AATF->Oncogene{Bushman},apoptosis_antagonizing_transcription_factor,chr17:35306175-35414171:+,UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C	BT474_BREAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	CAPZA2--SRP9	2	0	CAPZA2	3371	chr7:116502704:+	SRP9	25493	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	BT474_BREAST	1	1	0.025	TRUE	0	0	0	9	0	TRUE	ACH-000927
BT474_BREAST	CPNE1--PI3	2	0	CPNE1	1155	chr20:34252724:-	PI3	14948	chr20:43804502:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	CPNE1->chr20:34213953-34252878:-,copine_1,PI3->chr20:43803517-43805185:+,peptidase_inhibitor_3	BT474_BREAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	CPSF6--C9orf3	2	0	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	BT474_BREAST	1	1	0.025	TRUE	53	99	2	44	0	FALSE	ACH-000927
BT474_BREAST	FBXO46--WDR26	2	0	FBXO46	1056	chr19:46234107:-	WDR26	22911	chr1:224599267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	FBXO46->F-box_protein_46,chr19:46213887-46234162:-,WDR26->WD_repeat_domain_26,chr1:224572845-224624735:-	BT474_BREAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	FCHSD2--LRTOMT	1	4	FCHSD2	10623	chr11:72695133:-	LRTOMT	31177	chr11:71799386:+	ONLY_REF_SPLICE	YES	19	11	0.21	0.31	0.0125	0.05	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,LRTOMT->chr11:71791382-71821828:+,leucine_rich_transmembrane_and_O-methyltransferase_domain_containing	BT474_BREAST	0.21	0.31	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ITFG1--VPS35	2	0	ITFG1	3708	chr16:47493014:-	VPS35	36100	chr16:46717518:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1,VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-	BT474_BREAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MED24--FKBP4	2	0	MED24	9031	chr17:38188902:-	FKBP4	25966	chr12:2906304:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	MED24->chr17:38175350-38217468:-,mediator_complex_subunit_24,FKBP4->FK506_binding_protein_4,chr12:2904119-2914576:+	BT474_BREAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	MEF2D--RP11-180D21.3	2	0	MEF2D	8161	chr1:156449082:-	RP11-180D21.3	22675	chr1:159452694:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,RP11-180D21.3->chr1:159436111-159453166:+	BT474_BREAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	SCARB1--UBC	2	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	BT474_BREAST	1	1	0.025	TRUE	55	66	6	101	0	FALSE	ACH-000927
BT474_BREAST	TMSB10--TMSB4X	2	0	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	BT474_BREAST	1	1	0.025	TRUE	0	1	0	17	1	TRUE	ACH-000927
BT474_BREAST	TPM4--SYCE2	1	4	TPM4	10590	chr19:16199930:+	SYCE2	25151	chr19:13011462:-	ONLY_REF_SPLICE	YES	397	11	0.01	0.31	0.0125	0.05	TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4,SYCE2->chr19:13009600-13030090:-,synaptonemal_complex_central_element_protein_2	BT474_BREAST	0.01	0.31	0.0625	FALSE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	NVL--ENAH	1	3	NVL	9706	chr1:224491425:-	ENAH	38875	chr1:225718340:-	ONLY_REF_SPLICE	NO	51	279	0.07	0.01	0.0125	0.0375	NVL->chr1:224415036-224518089:-,nuclear_VCP-like,ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila)	BT474_BREAST	0.01	0.07	0.05	FALSE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	DNAH14--CNIH3	1	2	DNAH14	22917	chr1:225231685:+	CNIH3	130415	chr1:224918164:+	ONLY_REF_SPLICE	YES	5	3	0.38	0.5	0.0125	0.025	DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14,CNIH3->chr1:224622362-224928251:+,cornichon_family_AMPA_receptor_auxiliary_protein_3	BT474_BREAST	0.38	0.5	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	NVL--ENAH	1	2	NVL	8395	chr1:224492736:-	ENAH	38875	chr1:225718340:-	ONLY_REF_SPLICE	YES	29	279	0.09	0.01	0.0125	0.025	NVL->chr1:224415036-224518089:-,nuclear_VCP-like,ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila)	BT474_BREAST	0.01	0.09	0.0375	FALSE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0125	0.025	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BT474_BREAST	1	1	0.0375	FALSE	93	270	15	244	0	FALSE	ACH-000927
BT474_BREAST	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	62	1	0.05	0.0125	0.025	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BT474_BREAST	0.05	1	0.0375	TRUE	465	1949	224	605	0	FALSE	ACH-000927
BT474_BREAST	BCL7A--PPP1R9A	1	1	BCL7A	8549	chr12:122492832:+	PPP1R9A	26129	chr7:94855273:+	ONLY_REF_SPLICE	YES	121	18	0.02	0.1	0.0125	0.0125	BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+,PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A	BT474_BREAST	0.02	0.1	0.025	TRUE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	BCL7A--PPP1R9A	1	1	BCL7A	8612	chr12:122492895:+	PPP1R9A	26129	chr7:94855273:+	ONLY_REF_SPLICE	YES	134	18	0.01	0.1	0.0125	0.0125	BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+,PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A	BT474_BREAST	0.01	0.1	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	BRD4--RFX1	1	1	BRD4	1256	chr19:15443101:-	RFX1	32548	chr19:14109129:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0125	0.0125	BRD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},bromodomain_containing_4,chr19:15347647-15443356:-,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	BT474_BREAST	0.67	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	DNAH14--CNIH3	1	1	DNAH14	18899	chr1:225211567:+	CNIH3	130415	chr1:224918164:+	ONLY_REF_SPLICE	YES	10	3	0.17	0.4	0.0125	0.0125	DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14,CNIH3->chr1:224622362-224928251:+,cornichon_family_AMPA_receptor_auxiliary_protein_3	BT474_BREAST	0.17	0.4	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ERN1--RP11-51L5.3	1	1	ERN1	4189	chr17:62175481:-	RP11-51L5.3	33975	chr17:60320487:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0125	0.0125	ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1,RP11-51L5.3->chr17:60308831-60324514:-	BT474_BREAST	0.2	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ERN1--RP11-51L5.3	1	1	ERN1	4189	chr17:62175481:-	RP11-51L5.3	32827	chr17:60324514:-	ONLY_REF_SPLICE	NO	8	0	0.2	1	0.0125	0.0125	ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1,RP11-51L5.3->chr17:60308831-60324514:-	BT474_BREAST	0.2	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	ERP29--MAPKAPK5	1	1	ERP29	1294	chr12:112451413:+	MAPKAPK5	12850	chr12:112303054:+	ONLY_REF_SPLICE	YES	1317	51	0	0.04	0.0125	0.0125	ERP29->chr12:112451120-112461255:+,endoplasmic_reticulum_protein_29,MAPKAPK5->chr12:112279782-112334343:+,mitogen-activated_protein_kinase-activated_protein_kinase_5	BT474_BREAST	0	0.04	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	FASN--IGFBP5	1	1	FASN	9727	chr17:80046266:-	IGFBP5	25002	chr2:217543802:-	ONLY_REF_SPLICE	YES	701	1447	0	0	0.0125	0.0125	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,FASN->chr17:80036214-80056208:-,fatty_acid_synthase,IGFBP5->Oncogene{Bushman},chr2:217536828-217560248:-,insulin_like_growth_factor_binding_protein_5	BT474_BREAST	0	0	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	NDUFB6--TOPORS-AS1	1	1	NDUFB6	3420	chr9:32558908:-	TOPORS-AS1	11231	chr9:32565395:+	ONLY_REF_SPLICE	YES	88	1	0.02	0.67	0.0125	0.0125	NEIGHBORS_OVERLAP:-:+:[14006],NDUFB6->NADH:ubiquinone_oxidoreductase_subunit_B6,chr9:32552997-32573160:-,TOPORS-AS1->TOPORS_antisense_RNA_1,chr9:32551142-32567003:+	BT474_BREAST	0.02	0.67	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	RP11-112H10.4--BCAS3	1	1	RP11-112H10.4	4634	chr17:56622032:+	BCAS3	15151	chr17:58786580:+	ONLY_REF_SPLICE	YES	0	27	1	0.07	0.0125	0.0125	RP11-112H10.4->chr17:56597198-56634338:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	BT474_BREAST	0.07	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	RP11-84G21.1--PTPRQ	1	1	RP11-84G21.1	1758	chr12:80329438:+	PTPRQ	46148	chr12:80981908:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0125	0.0125	RP11-84G21.1->chr12:80328681-80334448:+,PTPRQ->chr12:80799774-81072802:+,protein_tyrosine_phosphatase,_receptor_type_Q	BT474_BREAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000927
BT474_BREAST	SCARB2--PRELP	1	1	SCARB2	2625	chr4:77116860:-	PRELP	22323	chr1:203452297:+	ONLY_REF_SPLICE	YES	268	0	0.01	1	0.0125	0.0125	SCARB2->chr4:77079890-77135046:-,scavenger_receptor_class_B_member_2,PRELP->chr1:203444956-203460480:+,proline/arginine-rich_end_leucine-rich_repeat_protein	BT474_BREAST	0.01	1	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000927
BT474_BREAST	SNX25--BTG2	1	1	SNX25	3493	chr4:186168532:+	BTG2	30004	chr1:203276232:+	ONLY_REF_SPLICE	YES	7	158	0.22	0.01	0.0125	0.0125	SNX25->chr4:186125391-186291339:+,sorting_nexin_25,BTG2->BTG_family_member_2,Oncogene{Bushman},chr1:203274619-203278730:+	BT474_BREAST	0.01	0.22	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000927
UMUC3_URINARY_TRACT	GALNT7--SAP30	78	26	GALNT7	1209	chr4:174090112:+	SAP30	24096	chr4:174294541:+	ONLY_REF_SPLICE	YES	15	32	0.87	0.76	0.7909	0.2636	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[46002],GALNT7->chr4:174089904-174245118:+,polypeptide_N-acetylgalactosaminyltransferase_7,SAP30->Sin3A_associated_protein_30kDa,chr4:174291120-174298683:+	UMUC3_URINARY_TRACT	0.76	0.87	1.0545	FALSE	0	2	0	1	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	TIMM23B--LINC00843	57	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5779	0.2535	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	UMUC3_URINARY_TRACT	1	1	0.8314	TRUE	508	994	45	981	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	BAZ2A--MMP19	45	13	BAZ2A	3376	chr12:57023909:-	MMP19	27205	chr12:56236222:-	ONLY_REF_SPLICE	YES	37	0	0.61	1	0.4563	0.1318	BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,MMP19->chr12:56229217-56236750:-,matrix_metallopeptidase_19	UMUC3_URINARY_TRACT	0.61	1	0.5881	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	KCMF1--AP000459.4	45	8	KCMF1	1375	chr2:85198590:+	AP000459.4	20639	chr21:24745406:-	ONLY_REF_SPLICE	YES	46	0	0.54	1	0.4563	0.0811	KCMF1->Oncogene{Bushman},chr2:85198216-85286595:+,potassium_channel_modulatory_factor_1,AP000459.4->chr21:24733426-24757182:-	UMUC3_URINARY_TRACT	0.54	1	0.5374	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	TIMM23--RP11-464F9.1	37	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	258	7	0.13	0.85	0.3752	0.0203	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	UMUC3_URINARY_TRACT	0.13	0.85	0.3955	TRUE	519	3926	326	965	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	ZNF654--HMGB2	32	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3245	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	UMUC3_URINARY_TRACT	1	1	0.3245	TRUE	0	0	0	518	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	BAZ2A--MMP19	20	4	BAZ2A	2725	chr12:57024560:-	MMP19	27205	chr12:56236222:-	ONLY_REF_SPLICE	YES	12	0	0.67	1	0.2028	0.0406	BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,MMP19->chr12:56229217-56236750:-,matrix_metallopeptidase_19	UMUC3_URINARY_TRACT	0.67	1	0.2434	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	MT-TA--MT-TC	19	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1926	0.0203	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UMUC3_URINARY_TRACT	1	1	0.2129	FALSE	462	80	0	856	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	UBTD2--CTB-43E15.1	17	4	UBTD2	1476	chr5:171710600:-	CTB-43E15.1	10441	chr5:173084843:+	ONLY_REF_SPLICE	YES	15	0	0.58	1	0.1724	0.0406	UBTD2->chr5:171636644-171711075:-,ubiquitin_domain_containing_2,CTB-43E15.1->chr5:173069522-173085197:+	UMUC3_URINARY_TRACT	0.58	1	0.213	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND6--MT-TE	17	0	MT-ND6	1051	chrM:14623:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1724	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UMUC3_URINARY_TRACT	1	1	0.1724	FALSE	499	1288	110	792	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MAML1--COL23A1	14	1	MAML1	1578	chr5:179160428:+	COL23A1	23226	chr5:177987749:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1419	0.0101	{Klijn_CCL:Urinary_Bladder=1},MAML1->chr5:179159851-179223512:+,mastermind_like_transcriptional_coactivator_1,COL23A1->chr5:177664619-178017556:-,collagen_type_XXIII_alpha_1	UMUC3_URINARY_TRACT	1	1	0.152	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND6--MT-TE	13	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1318	0.0507	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UMUC3_URINARY_TRACT	1	1	0.1825	FALSE	499	1288	110	792	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	C15orf57--CBX3	11	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	30	27	0.39	0.41	0.1115	0.0811	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	UMUC3_URINARY_TRACT	0.39	0.41	0.1926	TRUE	267	562	48	632	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	AC104389.28--HBE1	10	4	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	19	0	0.42	1	0.1014	0.0406	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	UMUC3_URINARY_TRACT	0.42	1	0.142	TRUE	0	48	0	65	48	FALSE	ACH-000522
UMUC3_URINARY_TRACT	C15orf57--CBX3	7	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	30	27	0.29	0.31	0.071	0.0507	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	UMUC3_URINARY_TRACT	0.29	0.31	0.1217	TRUE	267	562	48	632	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND4--MT-ATP8	8	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0811	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UMUC3_URINARY_TRACT	1	1	0.0811	FALSE	231	205	14	283	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	TXNRD1--TBK1	7	4	TXNRD1	11664	chr12:104682818:+	TBK1	47360	chr12:64882267:+	ONLY_REF_SPLICE	YES	1333	33	0.01	0.25	0.071	0.0406	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+	UMUC3_URINARY_TRACT	0.01	0.25	0.1116	TRUE	0	0	0	1	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	GALNT7--SAP30	1	26	GALNT7	1209	chr4:174090112:+	SAP30	22164	chr4:174291717:+	ONLY_REF_SPLICE	YES	15	0	0.64	1	0.0101	0.2636	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[46002],GALNT7->chr4:174089904-174245118:+,polypeptide_N-acetylgalactosaminyltransferase_7,SAP30->Sin3A_associated_protein_30kDa,chr4:174291120-174298683:+	UMUC3_URINARY_TRACT	0.64	1	0.2737	FALSE	0	0	0	1	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	LDLRAD3--PRR5L	7	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	17578	chr11:36317840:+	INCL_NON_REF_SPLICE	YES	20	0	0.29	1	0.071	0.0101	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	UMUC3_URINARY_TRACT	0.29	1	0.0811	FALSE	0	52	1	15	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND4--MT-ATP8	7	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.071	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UMUC3_URINARY_TRACT	1	1	0.071	FALSE	230	198	14	283	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	RP11-680G10.1--GSE1	6	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.82	0.0608	0.0304	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	UMUC3_URINARY_TRACT	0.82	1	0.0912	TRUE	458	1351	185	561	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0608	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UMUC3_URINARY_TRACT	1	1	0.0608	FALSE	462	80	0	856	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	6	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0608	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	UMUC3_URINARY_TRACT	1	1	0.0608	FALSE	515	4851	409	746	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-TA--MT-TC	5	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0.0203	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UMUC3_URINARY_TRACT	1	1	0.071	FALSE	462	80	0	856	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	TXNRD1--KRT86	5	2	TXNRD1	11664	chr12:104682818:+	KRT86	37952	chr12:52695697:+	ONLY_REF_SPLICE	YES	1333	1	0.01	0.88	0.0507	0.0203	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,KRT86->chr12:52643084-52702947:+,keratin_86	UMUC3_URINARY_TRACT	0.01	0.88	0.071	FALSE	0	0	0	1	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	PC--TSPAN18	4	5	PC	16877	chr11:66619261:-	TSPAN18	25258	chr11:44785976:+	ONLY_REF_SPLICE	YES	31	0	0.23	1	0.0406	0.0507	PC->chr11:66615704-66725847:-,pyruvate_carboxylase,TSPAN18->chr11:44748015-44953972:+,tetraspanin_18	UMUC3_URINARY_TRACT	0.23	1	0.0913	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	HSD17B12--KIAA1549L	4	4	HSD17B12	20103	chr11:43837941:+	KIAA1549L	55267	chr11:33677558:+	ONLY_REF_SPLICE	YES	95	26	0.08	0.24	0.0406	0.0406	HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12,KIAA1549L->KIAA1549-like,chr11:33563618-33695648:+	UMUC3_URINARY_TRACT	0.08	0.24	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	MT-ATP6--MT-CO1	5	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	UMUC3_URINARY_TRACT	1	1	0.0507	FALSE	183	104	9	328	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND4--MT-ATP8	5	0	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UMUC3_URINARY_TRACT	1	1	0.0507	FALSE	231	217	16	283	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	5	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0507	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	UMUC3_URINARY_TRACT	1	1	0.0507	FALSE	407	2205	196	549	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-TA--MT-TC	4	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0.0203	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UMUC3_URINARY_TRACT	1	1	0.0609	FALSE	462	80	0	856	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	CLTC--VMP1	4	1	CLTC	1316	chr17:57697534:+	VMP1	54605	chr17:57917129:+	ONLY_REF_SPLICE	YES	222	800	0.02	0.01	0.0406	0.0101	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	UMUC3_URINARY_TRACT	0.01	0.02	0.0507	FALSE	0	0	0	3	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND4--MT-ATP8	4	1	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1181	24	0	0.17	0.0406	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UMUC3_URINARY_TRACT	0	0.17	0.0507	FALSE	216	209	16	281	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND6--MT-TE	3	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0.0507	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UMUC3_URINARY_TRACT	1	1	0.0811	FALSE	499	1288	110	792	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND6--MT-TE	3	5	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0.0507	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UMUC3_URINARY_TRACT	1	1	0.0811	FALSE	499	1288	110	792	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	PC--TSPAN18	3	5	PC	16228	chr11:66619910:-	TSPAN18	25258	chr11:44785976:+	ONLY_REF_SPLICE	YES	56	0	0.12	1	0.0304	0.0507	PC->chr11:66615704-66725847:-,pyruvate_carboxylase,TSPAN18->chr11:44748015-44953972:+,tetraspanin_18	UMUC3_URINARY_TRACT	0.12	1	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	BAZ2A--MMP19	3	4	BAZ2A	1635	chr12:57029966:-	MMP19	27205	chr12:56236222:-	ONLY_REF_SPLICE	YES	9	0	0.44	1	0.0304	0.0406	BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,MMP19->chr12:56229217-56236750:-,matrix_metallopeptidase_19	UMUC3_URINARY_TRACT	0.44	1	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	GAPDH--MT-ND2	4	0	GAPDH	4266	chr12:6646382:+	MT-ND2	9081	chrM:5129:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	UMUC3_URINARY_TRACT	1	1	0.0406	FALSE	0	0	0	1	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ATP6--MT-CO1	4	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	UMUC3_URINARY_TRACT	1	1	0.0406	FALSE	182	97	9	327	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND4--MT-ATP8	4	0	MT-ND4	1521	chrM:11280:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UMUC3_URINARY_TRACT	1	1	0.0406	FALSE	231	217	16	283	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	NO	6859	0	0	1	0.0304	0.0203	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UMUC3_URINARY_TRACT	0	1	0.0507	FALSE	231	217	16	283	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	6815	0	0	1	0.0304	0.0203	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UMUC3_URINARY_TRACT	0	1	0.0507	FALSE	231	217	16	283	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1776	chrM:11535:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	NO	6935	0	0	1	0.0304	0.0203	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UMUC3_URINARY_TRACT	0	1	0.0507	FALSE	231	217	16	283	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	6739	0	0	1	0.0304	0.0203	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UMUC3_URINARY_TRACT	0	1	0.0507	FALSE	231	217	16	283	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	TXNRD1--KRT86	3	2	TXNRD1	11664	chr12:104682818:+	KRT86	36778	chr12:52669605:+	ONLY_REF_SPLICE	YES	1333	0	0	1	0.0304	0.0203	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,KRT86->chr12:52643084-52702947:+,keratin_86	UMUC3_URINARY_TRACT	0	1	0.0507	FALSE	0	0	0	1	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND4--MT-ATP8	3	1	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6446	24	0	0.14	0.0304	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UMUC3_URINARY_TRACT	0	0.14	0.0405	FALSE	231	217	16	283	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND4--MT-ATP8	3	1	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	6446	132	0	0.03	0.0304	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UMUC3_URINARY_TRACT	0	0.03	0.0405	FALSE	231	217	16	283	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ATP6--MT-CO1	3	0	MT-ATP6	1400	chrM:8926:+	MT-CO1	5381	chrM:6603:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	UMUC3_URINARY_TRACT	1	1	0.0304	FALSE	183	104	9	328	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	UMUC3_URINARY_TRACT	1	1	0.0304	FALSE	183	104	9	328	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ATP6--MT-CO1	3	0	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	UMUC3_URINARY_TRACT	1	1	0.0304	FALSE	183	104	9	328	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND4--MT-ATP8	3	0	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UMUC3_URINARY_TRACT	1	1	0.0304	FALSE	231	217	16	283	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND4--MT-ATP8	3	0	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UMUC3_URINARY_TRACT	1	1	0.0304	FALSE	231	217	16	283	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND4--MT-ATP8	3	0	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UMUC3_URINARY_TRACT	1	1	0.0304	FALSE	231	205	14	283	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND4--MT-ATP8	3	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UMUC3_URINARY_TRACT	1	1	0.0304	FALSE	231	205	14	283	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UMUC3_URINARY_TRACT	1	1	0.0304	FALSE	499	1288	110	792	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UMUC3_URINARY_TRACT	1	1	0.0304	FALSE	499	1288	110	792	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	PTMS--MT-ND2	3	0	PTMS	4860	chr12:6879843:+	MT-ND2	9048	chrM:5384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	PTMS->chr12:6874682-6880116:+,parathymosin,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	UMUC3_URINARY_TRACT	1	1	0.0304	FALSE	0	0	0	1	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	RP11-634B7.4--TRIM58	3	0	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	UMUC3_URINARY_TRACT	1	1	0.0304	TRUE	158	633	76	73	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	TXNRD1--TBK1	3	0	TXNRD1	10019	chr12:104680887:+	TBK1	47360	chr12:64882267:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+	UMUC3_URINARY_TRACT	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	WDR33--RASA3	3	0	WDR33	7687	chr2:128520636:-	RASA3	38299	chr13:114806570:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-	UMUC3_URINARY_TRACT	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	WTAPP1--RUVBL1	3	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	UMUC3_URINARY_TRACT	1	1	0.0304	TRUE	9	252	6	66	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	RP11-680G10.1--GSE1	2	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	14	1	0.22	0.0203	0.0203	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	UMUC3_URINARY_TRACT	0.22	1	0.0406	TRUE	465	1949	224	605	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	ASAP1--FAM49B	2	1	ASAP1	3357	chr8:131414131:-	FAM49B	49409	chr8:130983241:-	ONLY_REF_SPLICE	YES	79	4	0.04	0.43	0.0203	0.0101	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	UMUC3_URINARY_TRACT	0.04	0.43	0.0304	FALSE	0	2	0	1	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	MAP4--ZNF589	2	1	MAP4	24586	chr3:47918907:-	ZNF589	44319	chr3:48302303:+	ONLY_REF_SPLICE	YES	246	17	0.01	0.15	0.0203	0.0101	GTEx&tcga_normals:1/3694=0.03%,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,ZNF589->chr3:48282590-48340743:+,zinc_finger_protein_589	UMUC3_URINARY_TRACT	0.01	0.15	0.0304	FALSE	0	0	0	1	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	PBX3--MAPKAP1	2	1	PBX3	2279	chr9:128510902:+	MAPKAP1	43593	chr9:128230388:-	ONLY_REF_SPLICE	YES	34	388	0.08	0.01	0.0203	0.0101	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	UMUC3_URINARY_TRACT	0.01	0.08	0.0304	FALSE	0	0	0	3	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0203	0.0101	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	UMUC3_URINARY_TRACT	0.75	1	0.0304	FALSE	192	492	57	212	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	AC104389.28--HBE1	1	4	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	NO	19	0	0.21	1	0.0101	0.0406	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	UMUC3_URINARY_TRACT	0.21	1	0.0507	TRUE	0	35	0	55	35	FALSE	ACH-000522
UMUC3_URINARY_TRACT	ARRB1--PICALM	2	0	ARRB1	1242	chr11:75062632:-	PICALM	29095	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	ATP5C1--VWA8	2	0	ATP5C1	1135	chr10:7830226:+	VWA8	33306	chr13:42335340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+,VWA8->chr13:42140973-42535256:-,von_Willebrand_factor_A_domain_containing_8	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	CEP112--FADD	2	0	CEP112	6307	chr17:64171162:-	FADD	46457	chr11:70052239:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CEP112->centrosomal_protein_112,chr17:63631656-64188202:-,FADD->Fas_associated_via_death_domain,chr11:70049269-70053496:+	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	COMMD10--MNAT1	2	0	COMMD10	6085	chr5:115469875:+	MNAT1	27531	chr14:61346432:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+,MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	347	1186	183	220	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	EIF1AX--PTTG1	2	0	EIF1AX	1220	chrX:20159743:-	PTTG1	14908	chr5:159849309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	EIF1AX->Oncogene{Bushman},chrX:20142636-20159962:-,eukaryotic_translation_initiation_factor_1A,_X-linked,PTTG1->Oncogene{Bushman},chr5:159848829-159855748:+,pituitary_tumor-transforming_1	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	EIF4G2--CTR9	2	0	EIF4G2	4204	chr11:10827454:-	CTR9	34226	chr11:10796754:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_INVERSION:-:+:[17307],EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2,CTR9->CTR9_homolog,_Paf1/RNA_polymerase_II_complex_component,chr11:10772534-10801290:+	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	GLUD1P3--SRPK1	2	0	GLUD1P3	1312	chr10:75490631:+	SRPK1	15012	chr6:35854588:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GLUD1P3->chr10:75490320-75497069:+,glutamate_dehydrogenase_1_pseudogene_3,SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	KTN1-AS1--IVNS1ABP	2	0	KTN1-AS1	2307	chr14:56045324:-	IVNS1ABP	19069	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	KTN1-AS1->KTN1_antisense_RNA_1,chr14:55965996-56046828:-,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	MTERFD2--FARP2	2	0	MTERFD2	1080	chr2:242041668:-	FARP2	27127	chr2:242343243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	MTERFD2->chr2:242011584-242041747:-,FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	MTRF1--KIF4A	2	0	MTRF1	1122	chr13:41837621:-	KIF4A	39844	chrX:69624565:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	MTRF1->chr13:41790505-41837742:-,mitochondrial_translational_release_factor_1,KIF4A->chrX:69509879-69640682:+,kinesin_family_member_4A	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	NANOS3--SAMD1	2	0	NANOS3	1132	chr19:13973008:+	SAMD1	9663	chr19:14200174:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	NANOS3->chr19:13972877-13991571:+,nanos_homolog_3_(Drosophila),SAMD1->chr19:14198652-14201848:-,sterile_alpha_motif_domain_containing_1	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	1	0	1	1	TRUE	ACH-000522
UMUC3_URINARY_TRACT	PDLIM5--CHMP1A	2	0	PDLIM5	29642	chr4:95585186:+	CHMP1A	41611	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	POM121C--TBCD	2	0	POM121C	4024	chr7:75103970:-	TBCD	25423	chr17:80721841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	POM121C->POM121_transmembrane_nucleoporin_C,chr7:75046066-75115548:-,TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	POMK--PAK2	2	0	POMK	4467	chr8:42958973:+	PAK2	21762	chr3:196544928:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	POMK->chr8:42948658-42978577:+,protein-O-mannose_kinase,PAK2->chr3:196466728-196559518:+,p21_(RAC1)_activated_kinase_2	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	RP11-114H23.1--RP11-114H23.2	2	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	UMUC3_URINARY_TRACT	1	1	0.0203	FALSE	81	155	12	160	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	RP11-3L8.3--PDHX	2	0	RP11-3L8.3	2199	chr9:12790619:-	PDHX	16931	chr11:34999671:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	RP11-3L8.3->chr9:12700100-12814344:-,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	ZDHHC13--UBXN4	2	0	ZDHHC13	1841	chr11:19139486:+	UBXN4	29107	chr2:136505837:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ZDHHC13->chr11:19138646-19197969:+,zinc_finger_DHHC-type_containing_13,UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	ZNF346--LINC00339	2	0	ZNF346	1218	chr5:176449914:+	LINC00339	18903	chr1:22356773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346,LINC00339->chr1:22351681-22357716:+,long_intergenic_non-protein_coding_RNA_339	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	ZNF738--CHMP1A	2	0	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	UMUC3_URINARY_TRACT	1	1	0.0203	TRUE	1	20	1	28	3	FALSE	ACH-000522
UMUC3_URINARY_TRACT	CMTM8--CMTM7	1	2	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	24	42	0.11	0.07	0.0101	0.0203	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	UMUC3_URINARY_TRACT	0.07	0.11	0.0304	FALSE	118	557	29	88	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	PRR16--CTD-2334D19.1	1	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	16	0	0.16	1	0.0101	0.0203	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	UMUC3_URINARY_TRACT	0.16	1	0.0304	FALSE	56	216	12	147	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	TRIM52-AS1--NELL2	1	2	TRIM52-AS1	2312	chr5:180690767:+	NELL2	21403	chr12:45108524:-	ONLY_REF_SPLICE	YES	56	0	0.05	1	0.0101	0.0203	TRIM52-AS1->TRIM52_antisense_RNA_1_(head_to_head),chr5:180688213-180699308:+,NELL2->chr12:44902058-45315631:-,neural_EGFL_like_2	UMUC3_URINARY_TRACT	0.05	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000522
UMUC3_URINARY_TRACT	TRIM52-AS1--NELL2	1	2	TRIM52-AS1	1173	chr5:180688385:+	NELL2	21403	chr12:45108524:-	ONLY_REF_SPLICE	YES	96	0	0.03	1	0.0101	0.0203	TRIM52-AS1->TRIM52_antisense_RNA_1_(head_to_head),chr5:180688213-180699308:+,NELL2->chr12:44902058-45315631:-,neural_EGFL_like_2	UMUC3_URINARY_TRACT	0.03	1	0.0304	TRUE	0	0	0	1	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	TXNRD1--KRT86	1	2	TXNRD1	13278	chr12:104684882:+	KRT86	36778	chr12:52669605:+	ONLY_REF_SPLICE	YES	1538	0	0	1	0.0101	0.0203	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,KRT86->chr12:52643084-52702947:+,keratin_86	UMUC3_URINARY_TRACT	0	1	0.0304	FALSE	0	0	0	1	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	TXNRD1--TBK1	1	2	TXNRD1	11664	chr12:104682818:+	TBK1	48462	chr12:64883821:+	ONLY_REF_SPLICE	YES	1333	62	0	0.05	0.0101	0.0203	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+	UMUC3_URINARY_TRACT	0	0.05	0.0304	FALSE	0	0	0	1	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	AGAP3--PANK2	1	1	AGAP3	11739	chr7:150817232:+	PANK2	38911	chr20:3899318:+	ONLY_REF_SPLICE	YES	96	78	0.02	0.03	0.0101	0.0101	AGAP3->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_3,chr7:150782918-150841523:+,PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2	UMUC3_URINARY_TRACT	0.02	0.03	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	ASAP1--FAM49B	1	1	ASAP1	3357	chr8:131414131:-	FAM49B	60144	chr8:130891717:-	ONLY_REF_SPLICE	YES	79	233	0.02	0.01	0.0101	0.0101	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	UMUC3_URINARY_TRACT	0.01	0.02	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	CLTC--VMP1	1	1	CLTC	31229	chr17:57768072:+	VMP1	54605	chr17:57917129:+	ONLY_REF_SPLICE	NO	185	800	0.01	0	0.0101	0.0101	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	UMUC3_URINARY_TRACT	0	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	PRKRIP1--CUX1	1	1	PRKRIP1	4162	chr7:102016769:+	CUX1	62126	chr7:101916637:+	ONLY_REF_SPLICE	YES	33	55	0.06	0.04	0.0101	0.0101	LOCAL_REARRANGEMENT:+:[77070],PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	UMUC3_URINARY_TRACT	0.04	0.06	0.0202	TRUE	0	0	0	3	0	FALSE	ACH-000522
UMUC3_URINARY_TRACT	TXNRD1--TBK1	1	1	TXNRD1	10256	chr12:104681124:+	TBK1	47360	chr12:64882267:+	ONLY_REF_SPLICE	YES	430	33	0	0.06	0.0101	0.0101	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+	UMUC3_URINARY_TRACT	0	0.06	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000522
SNUC1_LARGE_INTESTINE	KIAA1199--RP11-66B24.2	410	159	KIAA1199	6079	chr15:81173477:+	RP11-66B24.2	36992	chr15:101390416:+	ONLY_REF_SPLICE	YES	125	3	0.82	0.99	4.9528	1.9207	KIAA1199->chr15:81071684-81244117:+,RP11-66B24.2->chr15:101389766-101402376:+	SNUC1_LARGE_INTESTINE	0.82	0.99	6.8735	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	APIP--SLC1A2	254	220	APIP	1272	chr11:34937775:-	SLC1A2	22665	chr11:35339063:-	ONLY_REF_SPLICE	YES	143	6	0.77	0.99	3.0683	2.6576	APIP->APAF1_interacting_protein,chr11:34874641-34938046:-,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SNUC1_LARGE_INTESTINE	0.77	0.99	5.7259	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	KIAA1199--RP11-66B24.2	241	50	KIAA1199	6079	chr15:81173477:+	RP11-66B24.2	38837	chr15:101395436:+	ONLY_REF_SPLICE	YES	125	5	0.7	0.98	2.9113	0.604	KIAA1199->chr15:81071684-81244117:+,RP11-66B24.2->chr15:101389766-101402376:+	SNUC1_LARGE_INTESTINE	0.7	0.98	3.5153	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	ITPR1--PDHX	179	100	ITPR1	23400	chr3:4713338:+	PDHX	76477	chr11:34937775:+	INCL_NON_REF_SPLICE	YES	5	11	0.98	0.96	2.1623	1.208	ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNUC1_LARGE_INTESTINE	0.96	0.98	3.3703	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	CYFIP1--USP3	181	10	CYFIP1	1777	chr15:22892781:+	USP3	57280	chr15:63862632:+	ONLY_REF_SPLICE	YES	9	303	0.95	0.39	2.1865	0.1208	CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1,USP3->Oncogene{Bushman},chr15:63796793-63886839:+,ubiquitin_specific_peptidase_3	SNUC1_LARGE_INTESTINE	0.39	0.95	2.3073	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	ITPR1--PDHX	118	160	ITPR1	31087	chr3:4725453:+	PDHX	76477	chr11:34937775:+	INCL_NON_REF_SPLICE	YES	3	11	0.99	0.96	1.4254	1.9328	ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNUC1_LARGE_INTESTINE	0.96	0.99	3.3582	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	CHD2--STARD9	126	48	CHD2	29840	chr15:93515647:+	STARD9	97137	chr15:43008875:+	ONLY_REF_SPLICE	YES	6	1	0.97	0.99	1.5221	0.5798	{Klijn_CCL:Colo-Rectal=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,STARD9->StAR_related_lipid_transfer_domain_containing_9,chr15:42867857-43013179:+	SNUC1_LARGE_INTESTINE	0.97	0.99	2.1019	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	APIP--SLC1A2	16	225	APIP	1272	chr11:34937775:-	SLC1A2	21546	chr11:35344226:-	ONLY_REF_SPLICE	YES	143	0	0.63	1	0.1933	2.718	APIP->APAF1_interacting_protein,chr11:34874641-34938046:-,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SNUC1_LARGE_INTESTINE	0.63	1	2.9113	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	FAN1--CHRFAM7A	56	40	FAN1	16511	chr15:31222874:+	CHRFAM7A	30559	chr15:30665348:-	ONLY_REF_SPLICE	YES	47	0	0.67	1	0.6765	0.4832	FAN1->FANCD2/FANCI-associated_nuclease_1,chr15:31196055-31235311:+,CHRFAM7A->CHRNA7_(exons_5-10)_and_FAM7A_(exons_A-E)_fusion,chr15:30653443-30686052:-	SNUC1_LARGE_INTESTINE	0.67	1	1.1597	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	TIMM23B--LINC00843	52	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6282	0.2054	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNUC1_LARGE_INTESTINE	1	1	0.8336	TRUE	508	994	45	981	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	ITPR1--PDHX	19	144	ITPR1	30980	chr3:4725346:+	PDHX	76477	chr11:34937775:+	INCL_NON_REF_SPLICE	YES	19	11	0.9	0.94	0.2295	1.7395	ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SNUC1_LARGE_INTESTINE	0.9	0.94	1.969	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	PAQR5--IQCH	52	12	PAQR5	1110	chr15:69591395:+	IQCH	31483	chr15:67649683:+	ONLY_REF_SPLICE	YES	29	6	0.69	0.91	0.6282	0.145	PAQR5->chr15:69591286-69700119:+,progestin_and_adipoQ_receptor_family_member_5,IQCH->IQ_motif_containing_H,chr15:67547138-67794598:+	SNUC1_LARGE_INTESTINE	0.69	0.91	0.7732	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	MT-TA--MT-TC	54	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6523	0.0121	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNUC1_LARGE_INTESTINE	1	1	0.6644	FALSE	462	80	0	856	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	KIAA1199--RP11-66B24.2	34	12	KIAA1199	6079	chr15:81173477:+	RP11-66B24.2	40669	chr15:101400005:+	ONLY_REF_SPLICE	YES	125	7	0.27	0.87	0.4107	0.145	KIAA1199->chr15:81071684-81244117:+,RP11-66B24.2->chr15:101389766-101402376:+	SNUC1_LARGE_INTESTINE	0.27	0.87	0.5557	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	TIMM23--RP11-464F9.1	34	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4107	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNUC1_LARGE_INTESTINE	1	1	0.4107	TRUE	519	3926	326	965	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	C11orf35--SLC1A2	26	20	C11orf35	6475	chr11:555305:-	SLC1A2	14315	chr11:35339063:-	ONLY_REF_SPLICE	YES	215	6	0.18	0.88	0.3141	0.2416	C11orf35->chr11:554855-560779:-,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SNUC1_LARGE_INTESTINE	0.18	0.88	0.5557	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	KIAA1199--RP11-66B24.2	14	50	KIAA1199	6079	chr15:81173477:+	RP11-66B24.2	38833	chr15:101395432:+	INCL_NON_REF_SPLICE	YES	125	5	0.34	0.93	0.1691	0.604	KIAA1199->chr15:81071684-81244117:+,RP11-66B24.2->chr15:101389766-101402376:+	SNUC1_LARGE_INTESTINE	0.34	0.93	0.7731	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	HSPBP1--GRK5	20	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2416	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNUC1_LARGE_INTESTINE	1	1	0.2416	TRUE	1	39	0	134	39	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	MT-ATP6--MT-CO2	17	8	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	98	3	0.2	0.89	0.2054	0.0966	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNUC1_LARGE_INTESTINE	0.2	0.89	0.302	FALSE	59	21	0	114	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	ZNF654--HMGB2	18	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2174	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNUC1_LARGE_INTESTINE	1	1	0.2174	TRUE	0	0	0	518	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	MT-ATP6--MT-CO1	16	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	14579	32468	0	0	0.1933	0.0242	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNUC1_LARGE_INTESTINE	0	0	0.2175	FALSE	183	104	9	328	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	TMEM54--MT-CO2	14	10	TMEM54	2326	chr1:33363811:-	MT-CO2	8517	chrM:7597:+	INCL_NON_REF_SPLICE	YES	2886	0	0.01	1	0.1691	0.1208	TMEM54->chr1:33360195-33367039:-,transmembrane_protein_54,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNUC1_LARGE_INTESTINE	0.01	1	0.2899	FALSE	0	0	0	10	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	ATAD5--LRRC37BP1	11	13	ATAD5	20714	chr17:29206505:+	LRRC37BP1	29159	chr17:28956698:+	ONLY_REF_SPLICE	YES	30	0	0.44	1	0.1329	0.157	ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+,LRRC37BP1->chr17:28956698-28964482:+,leucine_rich_repeat_containing_37B_pseudogene_1	SNUC1_LARGE_INTESTINE	0.44	1	0.2899	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	C15orf57--CBX3	7	18	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	217	53	0.1	0.32	0.0846	0.2174	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNUC1_LARGE_INTESTINE	0.1	0.32	0.302	TRUE	267	562	48	632	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	CHD2--STARD9	3	34	CHD2	29783	chr15:93515590:+	STARD9	97137	chr15:43008875:+	INCL_NON_REF_SPLICE	YES	4	1	0.9	0.97	0.0362	0.4107	{Klijn_CCL:Colo-Rectal=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,STARD9->StAR_related_lipid_transfer_domain_containing_9,chr15:42867857-43013179:+	SNUC1_LARGE_INTESTINE	0.9	0.97	0.4469	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	MT-ND6--MT-TE	11	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.1329	0.0242	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNUC1_LARGE_INTESTINE	0.87	1	0.1571	FALSE	499	1288	110	792	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	C15orf57--CBX3	7	16	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	215	53	0.1	0.3	0.0846	0.1933	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNUC1_LARGE_INTESTINE	0.1	0.3	0.2779	TRUE	267	562	48	632	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	SAMD5--SASH1	10	2	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	25	4	0.32	0.75	0.1208	0.0242	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SNUC1_LARGE_INTESTINE	0.32	0.75	0.145	TRUE	53	396	64	110	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	MT-TA--MT-TC	9	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1087	0.0604	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNUC1_LARGE_INTESTINE	1	1	0.1691	FALSE	462	80	0	856	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1208	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNUC1_LARGE_INTESTINE	1	1	0.1208	TRUE	0	0	0	434	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	SLC1A5--MT-ND4L	10	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1208	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNUC1_LARGE_INTESTINE	1	1	0.1208	FALSE	0	0	0	189	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	SPG11--DAPK2	7	10	SPG11	28267	chr15:44887457:-	DAPK2	58117	chr15:64275953:-	ONLY_REF_SPLICE	YES	71	3	0.19	0.85	0.0846	0.1208	SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2	SNUC1_LARGE_INTESTINE	0.19	0.85	0.2054	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	PFKL--MT-ND4L	8	2	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1292	0	0.01	1	0.0966	0.0242	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNUC1_LARGE_INTESTINE	0.01	1	0.1208	FALSE	0	0	0	33	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	MT-ATP6--MT-CO2	6	8	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	88	3	0.14	0.82	0.0725	0.0966	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNUC1_LARGE_INTESTINE	0.14	0.82	0.1691	FALSE	59	21	0	114	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	MT-TA--MT-TC	7	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0846	0.0362	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNUC1_LARGE_INTESTINE	1	1	0.1208	FALSE	462	80	0	856	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	MT-ATP6--MT-CO1	7	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	14290	31647	0	0	0.0846	0.0242	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNUC1_LARGE_INTESTINE	0	0	0.1088	FALSE	183	104	9	328	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	MT-ND6--MT-TE	7	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0846	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNUC1_LARGE_INTESTINE	1	1	0.0846	FALSE	499	1288	110	792	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	MT-ATP6--MT-CO2	6	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	76	3	0.1	0.73	0.0725	0.0242	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNUC1_LARGE_INTESTINE	0.1	0.73	0.0967	FALSE	59	21	0	114	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	5	4	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0604	0.0483	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNUC1_LARGE_INTESTINE	0.82	1	0.1087	FALSE	81	155	12	160	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	MT-ATP6--MT-CO1	5	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	14535	28852	0	0	0.0604	0.0242	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNUC1_LARGE_INTESTINE	0	0	0.0846	FALSE	183	104	9	328	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	STK24--RNF113B	4	6	STK24	5361	chr13:99171497:-	RNF113B	25679	chr13:98828430:-	ONLY_REF_SPLICE	YES	546	46	0.02	0.18	0.0483	0.0725	STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24,RNF113B->chr13:98828039-98829519:-,ring_finger_protein_113B	SNUC1_LARGE_INTESTINE	0.02	0.18	0.1208	TRUE	0	0	0	2	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	9	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	99	3	0.11	0.8	0.0362	0.1087	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNUC1_LARGE_INTESTINE	0.11	0.8	0.1449	FALSE	59	21	0	114	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	SLC33A1--PLCH1	4	4	SLC33A1	4754	chr3:155560221:-	PLCH1	22666	chr3:155314167:-	ONLY_REF_SPLICE	YES	36	1	0.18	0.89	0.0483	0.0483	{Klijn_CCL:Colo-Rectal=1},NEIGHBORS[75957],SLC33A1->chr3:155538813-155572218:-,solute_carrier_family_33_member_1,PLCH1->chr3:155093369-155462856:-,phospholipase_C_eta_1	SNUC1_LARGE_INTESTINE	0.18	0.89	0.0966	FALSE	0	0	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	FAN1--CHRFAM7A	1	15	FAN1	15382	chr15:31221600:+	CHRFAM7A	30559	chr15:30665348:-	ONLY_REF_SPLICE	NO	56	0	0.22	1	0.0121	0.1812	FAN1->FANCD2/FANCI-associated_nuclease_1,chr15:31196055-31235311:+,CHRFAM7A->CHRNA7_(exons_5-10)_and_FAM7A_(exons_A-E)_fusion,chr15:30653443-30686052:-	SNUC1_LARGE_INTESTINE	0.22	1	0.1933	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	NRIP1--AF127936.7	3	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	41	0	0.2	1	0.0362	0.0846	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNUC1_LARGE_INTESTINE	0.2	1	0.1208	FALSE	164	806	69	479	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	11	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.93	1	0.0242	0.1329	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNUC1_LARGE_INTESTINE	0.93	1	0.1571	FALSE	192	492	57	212	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	SLC33A1--PLCH1	4	3	SLC33A1	2207	chr3:155571012:-	PLCH1	22666	chr3:155314167:-	ONLY_REF_SPLICE	YES	39	1	0.15	0.88	0.0483	0.0362	{Klijn_CCL:Colo-Rectal=1},NEIGHBORS[75957],SLC33A1->chr3:155538813-155572218:-,solute_carrier_family_33_member_1,PLCH1->chr3:155093369-155462856:-,phospholipase_C_eta_1	SNUC1_LARGE_INTESTINE	0.15	0.88	0.0845	FALSE	0	1	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	CYFIP1--USP3	3	6	CYFIP1	1777	chr15:22892781:+	USP3	58427	chr15:63866245:+	ONLY_REF_SPLICE	YES	9	292	0.5	0.03	0.0362	0.0725	CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1,USP3->Oncogene{Bushman},chr15:63796793-63886839:+,ubiquitin_specific_peptidase_3	SNUC1_LARGE_INTESTINE	0.03	0.5	0.1087	TRUE	0	0	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	MT-ATP6--MT-CO2	4	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	43	2	0.12	0.75	0.0483	0.0242	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNUC1_LARGE_INTESTINE	0.12	0.75	0.0725	FALSE	59	21	0	114	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	TPST1--APC	4	1	TPST1	5907	chr7:65751696:+	APC	26341	chr5:112151192:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0483	0.0121	{Klijn_CCL:Colo-Rectal=1},TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+	SNUC1_LARGE_INTESTINE	1	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	HSPBP1--GRK5	4	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNUC1_LARGE_INTESTINE	1	1	0.0483	TRUE	1	39	0	134	39	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	HSPBP1--GRK5	4	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNUC1_LARGE_INTESTINE	1	1	0.0483	TRUE	1	39	0	134	39	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNUC1_LARGE_INTESTINE	1	1	0.0483	FALSE	462	80	0	856	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	ATAD5--LRRC37BP1	2	7	ATAD5	20714	chr17:29206505:+	LRRC37BP1	30274	chr17:28958773:+	ONLY_REF_SPLICE	YES	30	3	0.23	0.75	0.0242	0.0846	ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+,LRRC37BP1->chr17:28956698-28964482:+,leucine_rich_repeat_containing_37B_pseudogene_1	SNUC1_LARGE_INTESTINE	0.23	0.75	0.1088	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	SLC33A1--PLCH1	2	7	SLC33A1	6328	chr3:155551257:-	PLCH1	22666	chr3:155314167:-	ONLY_REF_SPLICE	YES	33	1	0.21	0.9	0.0242	0.0846	{Klijn_CCL:Colo-Rectal=1},NEIGHBORS[75957],SLC33A1->chr3:155538813-155572218:-,solute_carrier_family_33_member_1,PLCH1->chr3:155093369-155462856:-,phospholipase_C_eta_1	SNUC1_LARGE_INTESTINE	0.21	0.9	0.1088	FALSE	0	0	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	KIAA1199--RP11-507B12.1	3	2	KIAA1199	6079	chr15:81173477:+	RP11-507B12.1	38412	chr15:61931911:-	ONLY_REF_SPLICE	YES	125	0	0.04	1	0.0362	0.0242	KIAA1199->chr15:81071684-81244117:+,RP11-507B12.1->chr15:61931548-62007370:-	SNUC1_LARGE_INTESTINE	0.04	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	13353	29571	0	0	0.0362	0.0242	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNUC1_LARGE_INTESTINE	0	0	0.0604	FALSE	183	104	9	328	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1174	chrM:8700:+	MT-CO1	5204	chrM:6426:+	INCL_NON_REF_SPLICE	YES	18309	29232	0	0	0.0362	0.0242	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNUC1_LARGE_INTESTINE	0	0	0.0604	FALSE	183	104	9	328	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	MT-ND6--MT-TE	3	2	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0.0242	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNUC1_LARGE_INTESTINE	1	1	0.0604	FALSE	499	1288	110	792	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	37	0	0.12	1	0.0362	0.0242	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNUC1_LARGE_INTESTINE	0.12	1	0.0604	FALSE	125	705	46	456	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	ACTN4--MT-CO1	3	1	ACTN4	20682	chr19:39220187:+	MT-CO1	26740	chrM:6925:+	INCL_NON_REF_SPLICE	NO	6	31784	0.4	0	0.0362	0.0121	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNUC1_LARGE_INTESTINE	0	0.4	0.0483	FALSE	0	0	0	3	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	ACTN4--MT-CO1	3	1	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	1755	31633	0	0	0.0362	0.0121	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNUC1_LARGE_INTESTINE	0	0	0.0483	FALSE	0	0	0	30	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	APC--TPST1	3	1	APC	10591	chr5:112137080:+	TPST1	38877	chr7:65751498:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0.0121	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1	SNUC1_LARGE_INTESTINE	1	1	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	FTH1--ACTB	3	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	9356	1	0	0.8	0.0362	0.0121	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNUC1_LARGE_INTESTINE	0	0.8	0.0483	FALSE	1	0	0	97	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	FTH1--ACTB	3	1	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	9394	1	0	0.8	0.0362	0.0121	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNUC1_LARGE_INTESTINE	0	0.8	0.0483	FALSE	1	0	0	97	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	0	0.71	1	0.0121	0.1087	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNUC1_LARGE_INTESTINE	0.71	1	0.1208	FALSE	515	4851	409	746	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	C17orf76-AS1--CALB1	3	0	C17orf76-AS1	1593	chr17:16342728:+	CALB1	16445	chr8:91094330:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	C17orf76-AS1->chr17:16342136-16381992:+,CALB1->calbindin_1,chr8:91070836-91107703:-	SNUC1_LARGE_INTESTINE	1	1	0.0362	TRUE	0	1	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	PPCDC--SNX1	2	4	PPCDC	2354	chr15:75320794:+	SNX1	16277	chr15:64404772:+	ONLY_REF_SPLICE	YES	130	598	0.04	0.01	0.0242	0.0483	PPCDC->chr15:75315896-75409803:+,phosphopantothenoylcysteine_decarboxylase,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	SNUC1_LARGE_INTESTINE	0.01	0.04	0.0725	FALSE	0	0	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	TBC1D2B--TLN2	3	0	TBC1D2B	16723	chr15:78293961:-	TLN2	45964	chr15:62989887:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	TBC1D2B->TBC1_domain_family_member_2B,chr15:78276378-78370066:-,TLN2->chr15:62682725-63136830:+,talin_2	SNUC1_LARGE_INTESTINE	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	VTI1A--RP11-57H14.3	3	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SNUC1_LARGE_INTESTINE	1	1	0.0362	FALSE	272	151	14	158	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	PPCDC--SNX1	1	6	PPCDC	4594	chr15:75336855:+	SNX1	16277	chr15:64404772:+	ONLY_REF_SPLICE	YES	249	598	0.03	0.01	0.0121	0.0725	PPCDC->chr15:75315896-75409803:+,phosphopantothenoylcysteine_decarboxylase,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	SNUC1_LARGE_INTESTINE	0.01	0.03	0.0846	FALSE	0	0	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	CCAT1--PVT1	2	1	CCAT1	1279	chr8:128231055:-	PVT1	23337	chr8:129021836:+	ONLY_REF_SPLICE	YES	30	56	0.09	0.05	0.0242	0.0121	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	SNUC1_LARGE_INTESTINE	0.05	0.09	0.0363	TRUE	0	0	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	GATS--PILRB	2	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	21	183	0.12	0.02	0.0242	0.0121	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	SNUC1_LARGE_INTESTINE	0.02	0.12	0.0363	TRUE	57	41	2	35	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	THSD4--BBS4	2	1	THSD4	22199	chr15:72040933:+	BBS4	42615	chr15:73002041:+	ONLY_REF_SPLICE	YES	5	12	0.38	0.2	0.0242	0.0121	THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4,BBS4->Bardet-Biedl_syndrome_4,chr15:72978527-73030817:+	SNUC1_LARGE_INTESTINE	0.2	0.38	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	FAN1--CHRFAM7A	2	0	FAN1	11564	chr15:31214557:+	CHRFAM7A	30559	chr15:30665348:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	FAN1->FANCD2/FANCI-associated_nuclease_1,chr15:31196055-31235311:+,CHRFAM7A->CHRNA7_(exons_5-10)_and_FAM7A_(exons_A-E)_fusion,chr15:30653443-30686052:-	SNUC1_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	METTL4--LPIN2	2	0	METTL4	1361	chr18:2571148:-	LPIN2	21892	chr18:2960847:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	METTL4->chr18:2537524-2571508:-,methyltransferase_like_4,LPIN2->chr18:2916992-3013313:-,lipin_2	SNUC1_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNUC1_LARGE_INTESTINE	1	1	0.0242	FALSE	292	1546	117	613	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	PPCDC--SNX1	2	0	PPCDC	1072	chr15:75315967:+	SNX1	16277	chr15:64404772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	PPCDC->chr15:75315896-75409803:+,phosphopantothenoylcysteine_decarboxylase,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	SNUC1_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	PROSC--ACAT2	2	0	PROSC	2996	chr8:37623873:+	ACAT2	14987	chr6:160183951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),ACAT2->acetyl-CoA_acetyltransferase_2,chr6:160181360-160200144:+	SNUC1_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	RORA--USP3	2	0	RORA	1267	chr15:61521252:-	USP3	48183	chr15:63824846:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,USP3->Oncogene{Bushman},chr15:63796793-63886839:+,ubiquitin_specific_peptidase_3	SNUC1_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	RP4-756H11.3--CDC42	2	0	RP4-756H11.3	1089	chr7:66119613:+	CDC42	12458	chr1:22404922:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RP4-756H11.3->chr7:66119525-66134842:+,CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+	SNUC1_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	SPG11--DAPK2	1	4	SPG11	27443	chr15:44888281:-	DAPK2	58117	chr15:64275953:-	ONLY_REF_SPLICE	NO	198	3	0.02	0.62	0.0121	0.0483	SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2	SNUC1_LARGE_INTESTINE	0.02	0.62	0.0604	TRUE	0	0	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	GPR39--AC016909.1	1	3	GPR39	2325	chr2:133175471:+	AC016909.1	11439	chr2:133687452:+	ONLY_REF_SPLICE	YES	48	0	0.08	1	0.0121	0.0362	GPR39->G_protein-coupled_receptor_39,chr2:133174147-133404132:+,AC016909.1->chr2:133673130-133689067:+	SNUC1_LARGE_INTESTINE	0.08	1	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000722
SNUC1_LARGE_INTESTINE	DGKH--VWA8	1	2	DGKH	4492	chr13:42703768:+	VWA8	70466	chr13:42393522:-	ONLY_REF_SPLICE	YES	28	85	0.1	0.03	0.0121	0.0242	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[78920],DGKH->chr13:42614176-42830714:+,diacylglycerol_kinase_eta,VWA8->chr13:42140973-42535256:-,von_Willebrand_factor_A_domain_containing_8	SNUC1_LARGE_INTESTINE	0.03	0.1	0.0363	TRUE	0	0	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	234	96	0.01	0.02	0.0121	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SNUC1_LARGE_INTESTINE	0.01	0.02	0.0242	FALSE	16	22	0	27	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	48590	chr7:925693:+	ONLY_REF_SPLICE	NO	234	0	0.01	1	0.0121	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SNUC1_LARGE_INTESTINE	0.01	1	0.0242	FALSE	0	4	0	9	2	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	AXIN1--RBM26	1	1	AXIN1	3264	chr16:396148:-	RBM26	43986	chr13:79889128:-	ONLY_REF_SPLICE	NO	274	7	0.01	0.22	0.0121	0.0121	AXIN1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},axin_1,chr16:337440-402673:-,RBM26->RNA_binding_motif_protein_26,chr13:79885962-79980612:-	SNUC1_LARGE_INTESTINE	0.01	0.22	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	C2orf82--PTMA	1	1	C2orf82	5282	chr2:233740832:+	PTMA	15293	chr2:232576058:+	ONLY_REF_SPLICE	YES	68	8359	0.03	0	0.0121	0.0121	C2orf82->chr2:233721980-233743418:+,chromosome_2_open_reading_frame_82,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SNUC1_LARGE_INTESTINE	0	0.03	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	CACUL1--FAM204A	1	1	CACUL1	3970	chr10:120488807:-	FAM204A	26162	chr10:120085755:-	ONLY_REF_SPLICE	YES	29	115	0.06	0.02	0.0121	0.0121	CACUL1->CDK2_associated_cullin_domain_1,chr10:120433679-120514761:-,FAM204A->chr10:120065401-120101840:-,family_with_sequence_similarity_204_member_A	SNUC1_LARGE_INTESTINE	0.02	0.06	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	CCAT1--PVT1	1	1	CCAT1	1279	chr8:128231055:-	PVT1	26354	chr8:129082406:+	ONLY_REF_SPLICE	YES	30	94	0.06	0.02	0.0121	0.0121	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	SNUC1_LARGE_INTESTINE	0.02	0.06	0.0242	TRUE	0	1	0	2	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	CCDC130--ASF1B	1	1	CCDC130	1526	chr19:13843099:+	ASF1B	17065	chr19:14237049:-	ONLY_REF_SPLICE	NO	16	429	0.11	0	0.0121	0.0121	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},CCDC130->chr19:13842574-13874110:+,coiled-coil_domain_containing_130,ASF1B->anti-silencing_function_1B_histone_chaperone,chr19:14230321-14247768:-	SNUC1_LARGE_INTESTINE	0	0.11	0.0242	FALSE	0	1	0	1	1	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	CD44--ITPR1	1	1	CD44	2671	chr11:35198287:+	ITPR1	45576	chr3:4702672:+	ONLY_REF_SPLICE	YES	4525	2	0	0.5	0.0121	0.0121	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1	SNUC1_LARGE_INTESTINE	0	0.5	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	GPBP1L1--ERI3	1	1	GPBP1L1	2702	chr1:46152084:-	ERI3	34818	chr1:44713710:-	ONLY_REF_SPLICE	YES	141	237	0.01	0.01	0.0121	0.0121	GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-,ERI3->ERI1_exoribonuclease_family_member_3,chr1:44686742-44820932:-	SNUC1_LARGE_INTESTINE	0.01	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	HNRNPA2B1--HMGB1	1	1	HNRNPA2B1	1958	chr7:26240192:-	HMGB1	19334	chr13:31037831:-	ONLY_REF_SPLICE	YES	4038	2600	0	0	0.0121	0.0121	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	SNUC1_LARGE_INTESTINE	0	0	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	HOOK3--SLC20A2	1	1	HOOK3	2343	chr8:42761401:+	SLC20A2	44924	chr8:42390478:-	ONLY_REF_SPLICE	YES	78	417	0.03	0	0.0121	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1},HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3,SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2	SNUC1_LARGE_INTESTINE	0	0.03	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	NDUFB5--ACTL6A	1	1	NDUFB5	1250	chr3:179322727:+	ACTL6A	17603	chr3:179291157:+	ONLY_REF_SPLICE	NO	606	879	0	0	0.0121	0.0121	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[16282],NDUFB5->NADH:ubiquinone_oxidoreductase_subunit_B5,chr3:179322478-179345435:+,ACTL6A->actin_like_6A,chr3:179280668-179306196:+	SNUC1_LARGE_INTESTINE	0	0	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	SLC1A2--CD44	1	1	SLC1A2	9102	chr11:35327621:-	CD44	31199	chr11:35198122:+	ONLY_REF_SPLICE	YES	199	5167	0.01	0	0.0121	0.0121	LOCAL_INVERSION:-:+:[18804],SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	SNUC1_LARGE_INTESTINE	0	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000722
SNUC1_LARGE_INTESTINE	TUBGCP3--ARHGEF7	1	1	TUBGCP3	14041	chr13:113200013:-	ARHGEF7	42339	chr13:111885552:+	ONLY_REF_SPLICE	NO	167	151	0.01	0.01	0.0121	0.0121	TUBGCP3->chr13:113139325-113242481:-,tubulin_gamma_complex_associated_protein_3,ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+	SNUC1_LARGE_INTESTINE	0.01	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000722
8505C_THYROID	TIMM23B--LINC00843	60	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8762	0.2921	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	8505C_THYROID	1	1	1.1683	TRUE	508	994	45	981	0	FALSE	ACH-001307
8505C_THYROID	TIMM23--RP11-464F9.1	41	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	156	0	0.22	1	0.5987	0.0292	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	8505C_THYROID	0.22	1	0.6279	TRUE	519	3926	326	965	0	FALSE	ACH-001307
8505C_THYROID	KIAA0020--CDC37L1	28	26	KIAA0020	3511	chr9:2837180:-	CDC37L1	28004	chr9:4697096:+	ONLY_REF_SPLICE	YES	111	11	0.33	0.83	0.4089	0.3797	KIAA0020->chr9:2720469-2844241:-,CDC37L1->cell_division_cycle_37_like_1,chr9:4679559-4708398:+	8505C_THYROID	0.33	0.83	0.7886	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	UBAP2--SMU1	32	4	UBAP2	1125	chr9:34048823:-	SMU1	36549	chr9:33076727:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.4673	0.0584	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,SMU1->chr9:33041762-33076665:-,smu-1_suppressor_of_mec-8_and_unc-52_homolog_(C._elegans)	8505C_THYROID	0.97	1	0.5257	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	ZNF654--HMGB2	32	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4673	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	8505C_THYROID	1	1	0.4673	TRUE	0	0	0	518	0	FALSE	ACH-001307
8505C_THYROID	ANKRD28--HACL1	25	4	ANKRD28	2465	chr3:15855747:-	HACL1	57631	chr3:15605051:-	ONLY_REF_SPLICE	YES	8	38	0.78	0.43	0.3651	0.0584	NEIGHBORS[65405],ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,HACL1->2-hydroxyacyl-CoA_lyase_1,chr3:15602211-15643338:-	8505C_THYROID	0.43	0.78	0.4235	FALSE	0	0	0	1	0	FALSE	ACH-001307
8505C_THYROID	UBAP2--SMU1	19	4	UBAP2	1125	chr9:34048823:-	SMU1	37696	chr9:33073804:-	ONLY_REF_SPLICE	YES	1	7	0.96	0.77	0.2775	0.0584	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,SMU1->chr9:33041762-33076665:-,smu-1_suppressor_of_mec-8_and_unc-52_homolog_(C._elegans)	8505C_THYROID	0.77	0.96	0.3359	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	NIPA2--POLA1	18	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2629	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	8505C_THYROID	1	1	0.2629	TRUE	46	1352	75	139	0	FALSE	ACH-001307
8505C_THYROID	KIAA0020--CDC37L1	7	40	KIAA0020	19905	chr9:2782756:-	CDC37L1	28004	chr9:4697096:+	ONLY_REF_SPLICE	YES	0	11	1	0.81	0.1022	0.5841	KIAA0020->chr9:2720469-2844241:-,CDC37L1->cell_division_cycle_37_like_1,chr9:4679559-4708398:+	8505C_THYROID	0.81	1	0.6863	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	ZNF823--AC005624.2	13	3	ZNF823	1193	chr19:11849632:-	AC005624.2	10462	chr19:2459098:-	ONLY_REF_SPLICE	YES	9	0	0.64	1	0.1898	0.0438	ZNF823->chr19:11832080-11849824:-,zinc_finger_protein_823,AC005624.2->chr19:2458933-2462183:-	8505C_THYROID	0.64	1	0.2336	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	RP11-444D3.1--SOX5	11	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1606	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	8505C_THYROID	1	1	0.1606	TRUE	477	1352	189	275	0	FALSE	ACH-001307
8505C_THYROID	RP11-123O10.4--GRIP1	10	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.146	0.0146	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	8505C_THYROID	1	1	0.1606	FALSE	416	2512	207	587	0	FALSE	ACH-001307
8505C_THYROID	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.146	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	8505C_THYROID	1	1	0.146	TRUE	0	0	0	434	0	FALSE	ACH-001307
8505C_THYROID	ZNF823--LMNB2	8	0	ZNF823	1193	chr19:11849632:-	LMNB2	10584	chr19:2444538:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1168	0	ZNF823->chr19:11832080-11849824:-,zinc_finger_protein_823,LMNB2->chr19:2427636-2456994:-,lamin_B2	8505C_THYROID	1	1	0.1168	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	RP11-96H19.1--RP11-446N19.1	5	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.073	0.0876	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	8505C_THYROID	1	1	0.1606	FALSE	407	2205	196	549	0	FALSE	ACH-001307
8505C_THYROID	CDKN2B-AS1--RP11-18A15.1	6	1	CDKN2B-AS1	1384	chr9:21995160:+	RP11-18A15.1	27103	chr9:26748214:+	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0876	0.0146	CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+,RP11-18A15.1->chr9:26746951-26786872:+	8505C_THYROID	0.64	1	0.1022	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.0876	0.0146	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	8505C_THYROID	0.88	1	0.1022	TRUE	458	1351	185	561	0	FALSE	ACH-001307
8505C_THYROID	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	5	1	0.58	0.0876	0.0146	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	8505C_THYROID	0.58	1	0.1022	TRUE	465	1949	224	605	0	FALSE	ACH-001307
8505C_THYROID	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0876	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	8505C_THYROID	1	1	0.0876	FALSE	292	1546	117	613	0	FALSE	ACH-001307
8505C_THYROID	RP11-96H19.1--RP11-446N19.1	5	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.073	0.0584	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	8505C_THYROID	1	1	0.1314	FALSE	515	4851	409	746	0	FALSE	ACH-001307
8505C_THYROID	ANXA2--NARG2	5	1	ANXA2	3600	chr15:60689457:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	YES	227	37	0.03	0.14	0.073	0.0146	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	8505C_THYROID	0.03	0.14	0.0876	TRUE	0	0	0	3	0	FALSE	ACH-001307
8505C_THYROID	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	8505C_THYROID	1	1	0.073	TRUE	0	0	0	434	0	FALSE	ACH-001307
8505C_THYROID	NRIP1--AF127936.7	4	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	21	0	0.19	1	0.0584	0.0146	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	8505C_THYROID	0.19	1	0.073	FALSE	125	705	46	456	0	FALSE	ACH-001307
8505C_THYROID	ADARB1--FAM207A	4	0	ADARB1	1941	chr21:46494708:+	FAM207A	36694	chr21:46380015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0584	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[96864],ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+,FAM207A->chr21:46359925-46396904:+,family_with_sequence_similarity_207_member_A	8505C_THYROID	1	1	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	CDKN2A--KIAA0020	3	4	CDKN2A	2163	chr9:21994138:-	KIAA0020	14578	chr9:2838517:-	ONLY_REF_SPLICE	YES	167	1	0.04	0.88	0.0438	0.0584	CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A,KIAA0020->chr9:2720469-2844241:-	8505C_THYROID	0.04	0.88	0.1022	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	NRIP1--AF127936.7	3	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	37	0	0.1	1	0.0438	0.0146	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	8505C_THYROID	0.1	1	0.0584	FALSE	164	806	69	479	0	FALSE	ACH-001307
8505C_THYROID	CTD-2544M6.1--LINC00923	3	0	CTD-2544M6.1	4364	chr15:98589896:-	LINC00923	10269	chr15:98301891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0438	0	CTD-2544M6.1->chr15:98589896-98836406:-,LINC00923->chr15:98285448-98417780:-,long_intergenic_non-protein_coding_RNA_923	8505C_THYROID	1	1	0.0438	TRUE	0	3	0	6	3	TRUE	ACH-001307
8505C_THYROID	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	8505C_THYROID	1	1	0.0438	TRUE	0	0	0	434	0	FALSE	ACH-001307
8505C_THYROID	UBAP2--SMU1	3	0	UBAP2	1125	chr9:34048823:-	SMU1	40060	chr9:33068932:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0438	0	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,SMU1->chr9:33041762-33076665:-,smu-1_suppressor_of_mec-8_and_unc-52_homolog_(C._elegans)	8505C_THYROID	1	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0146	0.0876	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	8505C_THYROID	1	1	0.1022	FALSE	275	511	55	178	0	FALSE	ACH-001307
8505C_THYROID	ANKRD28--COLQ	2	0	ANKRD28	1395	chr3:15900884:-	COLQ	43954	chr3:15531144:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,COLQ->chr3:15491640-15563258:-,collagen-like_tail_subunit_(single_strand_of_homotrimer)_of_asymmetric_acetylcholinesterase	8505C_THYROID	1	1	0.0292	TRUE	0	1	0	1	1	TRUE	ACH-001307
8505C_THYROID	ANXA2--NARG2	2	0	ANXA2	2915	chr15:60690142:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	8505C_THYROID	1	1	0.0292	TRUE	0	0	0	3	0	TRUE	ACH-001307
8505C_THYROID	KCNQ5-IT1--KCNQ5	2	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	8505C_THYROID	1	1	0.0292	FALSE	1	11	0	34	0	FALSE	ACH-001307
8505C_THYROID	POLDIP3--RANGAP1	2	0	POLDIP3	9001	chr22:42987961:-	RANGAP1	20100	chr22:41677086:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	POLDIP3->chr22:42979727-43010968:-,polymerase_(DNA)_delta_interacting_protein_3,RANGAP1->Ran_GTPase_activating_protein_1,chr22:41641615-41682255:-	8505C_THYROID	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	8505C_THYROID	1	1	0.0292	TRUE	274	363	69	150	0	FALSE	ACH-001307
8505C_THYROID	TPX2--BCL2L1	2	0	TPX2	2458	chr20:30330450:+	BCL2L1	28167	chr20:30253889:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_INVERSION:+:-:[15282],TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	8505C_THYROID	1	1	0.0292	TRUE	0	1	0	1	0	TRUE	ACH-001307
8505C_THYROID	YWHAQ--LAPTM4A	2	0	YWHAQ	1856	chr2:9770288:-	LAPTM4A	14184	chr2:20240772:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta,LAPTM4A->chr2:20232411-20251789:-,lysosomal_protein_transmembrane_4_alpha	8505C_THYROID	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	UBAP2--SMU1	1	2	UBAP2	1072	chr9:34048876:-	SMU1	37696	chr9:33073804:-	ONLY_REF_SPLICE	NO	0	7	1	0.3	0.0146	0.0292	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,SMU1->chr9:33041762-33076665:-,smu-1_suppressor_of_mec-8_and_unc-52_homolog_(C._elegans)	8505C_THYROID	0.3	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-001307
8505C_THYROID	ANKRD28--HACL1	1	1	ANKRD28	1395	chr3:15900884:-	HACL1	57631	chr3:15605051:-	ONLY_REF_SPLICE	YES	6	38	0.25	0.05	0.0146	0.0146	NEIGHBORS[65405],ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,HACL1->2-hydroxyacyl-CoA_lyase_1,chr3:15602211-15643338:-	8505C_THYROID	0.05	0.25	0.0292	FALSE	0	0	0	1	0	FALSE	ACH-001307
8505C_THYROID	ANXA2--NARG2	1	1	ANXA2	15528	chr15:60674541:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	NO	6561	37	0	0.05	0.0146	0.0146	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	8505C_THYROID	0	0.05	0.0292	FALSE	0	2	0	3	2	FALSE	ACH-001307
8505C_THYROID	CRIM1--FEZ2	1	1	CRIM1	21418	chr2:36764689:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	633	156	0	0.01	0.0146	0.0146	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	8505C_THYROID	0	0.01	0.0292	FALSE	1	4	0	11	0	FALSE	ACH-001307
8505C_THYROID	EIF2AK1--DAGLB	1	1	EIF2AK1	4376	chr7:6089543:-	DAGLB	36931	chr7:6456552:-	ONLY_REF_SPLICE	YES	228	63	0.01	0.03	0.0146	0.0146	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},EIF2AK1->chr7:6061881-6098861:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_1,DAGLB->chr7:6448757-6523821:-,diacylglycerol_lipase_beta	8505C_THYROID	0.01	0.03	0.0292	FALSE	0	0	0	1	0	FALSE	ACH-001307
8505C_THYROID	IGF2BP2--TRA2B	1	1	IGF2BP2	3513	chr3:185538800:-	TRA2B	30253	chr3:185649640:-	ONLY_REF_SPLICE	YES	301	573	0.01	0	0.0146	0.0146	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	8505C_THYROID	0	0.01	0.0292	FALSE	0	0	0	5	0	FALSE	ACH-001307
8505C_THYROID	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	2	160	0.5	0.01	0.0146	0.0146	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	8505C_THYROID	0.01	0.5	0.0292	FALSE	0	59	0	125	0	FALSE	ACH-001307
8505C_THYROID	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	2196	102	0	0.02	0.0146	0.0146	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	8505C_THYROID	0	0.02	0.0292	FALSE	6	50	7	115	0	FALSE	ACH-001307
HS766T_PANCREAS	IRAK2--BRK1	993	549	IRAK2	2367	chr3:10219704:+	BRK1	19794	chr3:10167310:+	ONLY_REF_SPLICE	YES	145	703	0.91	0.69	13.1224	7.255	LOCAL_REARRANGEMENT:+:[37675],IRAK2->Oncogene{Bushman},chr3:10206549-10285427:+,interleukin_1_receptor_associated_kinase_2,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	HS766T_PANCREAS	0.69	0.91	20.3774	TRUE	0	2	0	2	1	TRUE	ACH-000178
HS766T_PANCREAS	CCAT1--CASC8	86	88	CCAT1	1279	chr8:128231055:-	CASC8	12971	chr8:128433208:-	ONLY_REF_SPLICE	YES	28	0	0.86	1	1.1365	1.1629	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HS766T_PANCREAS	0.86	1	2.2994	TRUE	0	7	0	7	7	TRUE	ACH-000178
HS766T_PANCREAS	TIMM23B--LINC00843	82	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0836	0.4097	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS766T_PANCREAS	1	1	1.4933	TRUE	508	994	45	981	0	FALSE	ACH-000178
HS766T_PANCREAS	IRAK2--BRK1	1	299	IRAK2	2367	chr3:10219704:+	BRK1	20437	chr3:10167953:+	ONLY_REF_SPLICE	NO	145	771	0.67	0.28	0.0132	3.9512	LOCAL_REARRANGEMENT:+:[37675],IRAK2->Oncogene{Bushman},chr3:10206549-10285427:+,interleukin_1_receptor_associated_kinase_2,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	HS766T_PANCREAS	0.28	0.67	3.9644	TRUE	0	2	0	2	1	TRUE	ACH-000178
HS766T_PANCREAS	TIMM23--RP11-464F9.1	51	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	360	3	0.13	0.95	0.674	0.0661	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS766T_PANCREAS	0.13	0.95	0.7401	TRUE	519	3926	326	965	0	FALSE	ACH-000178
HS766T_PANCREAS	IRAK2--BRK1	2	168	IRAK2	1184	chr3:10206732:+	BRK1	19794	chr3:10167310:+	ONLY_REF_SPLICE	NO	295	703	0.37	0.19	0.0264	2.2201	LOCAL_REARRANGEMENT:+:[37675],IRAK2->Oncogene{Bushman},chr3:10206549-10285427:+,interleukin_1_receptor_associated_kinase_2,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	HS766T_PANCREAS	0.19	0.37	2.2465	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	MT-TA--MT-TC	33	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4361	0.0661	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS766T_PANCREAS	1	1	0.5022	FALSE	462	80	0	856	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-ND6--MT-TE	25	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3304	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS766T_PANCREAS	1	1	0.3304	FALSE	499	1288	110	792	0	FALSE	ACH-000178
HS766T_PANCREAS	CCAT1--CASC8	1	88	CCAT1	1279	chr8:128231055:-	CASC8	8200	chr8:128493316:-	ONLY_REF_SPLICE	NO	28	0	0.76	1	0.0132	1.1629	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HS766T_PANCREAS	0.76	1	1.1761	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	MT-ND6--MT-TE	19	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.2511	0.0529	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS766T_PANCREAS	0.88	1	0.304	FALSE	499	1288	110	792	0	FALSE	ACH-000178
HS766T_PANCREAS	CCAT1--CASC8	3	66	CCAT1	1274	chr8:128231060:-	CASC8	12971	chr8:128433208:-	INCL_NON_REF_SPLICE	YES	23	0	0.75	1	0.0396	0.8722	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HS766T_PANCREAS	0.75	1	0.9118	TRUE	0	7	0	7	7	TRUE	ACH-000178
HS766T_PANCREAS	C15orf57--CBX3	13	18	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	35	26	0.47	0.54	0.1718	0.2379	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS766T_PANCREAS	0.47	0.54	0.4097	TRUE	267	562	48	632	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-ND6--MT-TE	14	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.185	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS766T_PANCREAS	1	1	0.185	FALSE	499	1288	110	792	0	FALSE	ACH-000178
HS766T_PANCREAS	RP11-255B23.4--CASC8	14	0	RP11-255B23.4	1060	chr8:128215408:-	CASC8	12367	chr8:128433208:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.185	0	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HS766T_PANCREAS	1	1	0.185	TRUE	0	2	0	2	2	TRUE	ACH-000178
HS766T_PANCREAS	TIMP3--MT-ND4	11	2	TIMP3	5621	chr22:33255392:+	MT-ND4	12727	chrM:11227:+	INCL_NON_REF_SPLICE	YES	3940	16195	0	0	0.1454	0.0264	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HS766T_PANCREAS	0	0	0.1718	FALSE	0	0	0	10	0	FALSE	ACH-000178
HS766T_PANCREAS	C15orf57--CBX3	7	14	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	33	26	0.39	0.45	0.0925	0.185	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS766T_PANCREAS	0.39	0.45	0.2775	TRUE	267	562	48	632	0	FALSE	ACH-000178
HS766T_PANCREAS	NIPA2--POLA1	10	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1321	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	HS766T_PANCREAS	1	1	0.1321	TRUE	46	1352	75	139	0	FALSE	ACH-000178
HS766T_PANCREAS	TSPAN3--PEAK1	8	7	TSPAN3	9262	chr15:77339131:-	PEAK1	24017	chr15:77474382:-	INCL_NON_REF_SPLICE	YES	707	6	0.02	0.71	0.1057	0.0925	LOCAL_REARRANGEMENT:-:[24145],TSPAN3->chr15:77336359-77376326:-,tetraspanin_3,PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1	HS766T_PANCREAS	0.02	0.71	0.1982	TRUE	0	0	0	1	0	FALSE	ACH-000178
HS766T_PANCREAS	CCAT1--CASC8	1	33	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	28	18	0.55	0.65	0.0132	0.4361	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HS766T_PANCREAS	0.55	0.65	0.4493	TRUE	0	7	0	14	6	TRUE	ACH-000178
HS766T_PANCREAS	RP11-444D3.1--SOX5	8	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1057	0.0661	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS766T_PANCREAS	1	1	0.1718	TRUE	477	1352	189	275	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-TA--MT-TC	7	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0925	0.0661	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS766T_PANCREAS	1	1	0.1586	FALSE	462	80	0	856	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-ATP6--MT-CO1	6	6	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2339	25272	0.01	0	0.0793	0.0793	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS766T_PANCREAS	0	0.01	0.1586	FALSE	183	104	9	328	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-ND5--MT-ND6	7	2	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	1	3744	0.9	0	0.0925	0.0264	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HS766T_PANCREAS	0	0.9	0.1189	FALSE	26	124	4	93	0	FALSE	ACH-000178
HS766T_PANCREAS	RP11-680G10.1--GSE1	6	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0793	0.0793	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS766T_PANCREAS	0.92	1	0.1586	TRUE	458	1351	185	561	0	FALSE	ACH-000178
HS766T_PANCREAS	IRAK2--VHL	7	1	IRAK2	15087	chr3:10284949:+	VHL	20135	chr3:10184261:+	INCL_NON_REF_SPLICE	YES	87	287	0.08	0.03	0.0925	0.0132	LOCAL_REARRANGEMENT:+:[12645],IRAK2->Oncogene{Bushman},chr3:10206549-10285427:+,interleukin_1_receptor_associated_kinase_2,VHL->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr3:10182692-10193904:+,von_Hippel-Lindau_tumor_suppressor	HS766T_PANCREAS	0.03	0.08	0.1057	TRUE	0	1	0	1	1	FALSE	ACH-000178
HS766T_PANCREAS	MT-CO3--MT-ATP6	4	13	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	3	0.85	0.85	0.0529	0.1718	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS766T_PANCREAS	0.85	0.85	0.2247	FALSE	189	492	56	216	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-CO3--MT-ATP6	7	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0925	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS766T_PANCREAS	1	1	0.0925	FALSE	189	492	56	216	0	FALSE	ACH-000178
HS766T_PANCREAS	TSPAN3--PEAK1	5	8	TSPAN3	9275	chr15:77339118:-	PEAK1	24017	chr15:77474382:-	INCL_NON_REF_SPLICE	YES	738	6	0.02	0.68	0.0661	0.1057	LOCAL_REARRANGEMENT:-:[24145],TSPAN3->chr15:77336359-77376326:-,tetraspanin_3,PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1	HS766T_PANCREAS	0.02	0.68	0.1718	TRUE	0	0	0	1	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-ATP6--MT-CO1	6	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	8775	0	0	1	0.0793	0.0264	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS766T_PANCREAS	0	1	0.1057	FALSE	182	97	9	327	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-CO3--MT-ATP6	3	14	MT-CO3	1138	chrM:9344:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	3	2	0.85	0.89	0.0396	0.185	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS766T_PANCREAS	0.85	0.89	0.2246	FALSE	189	492	56	216	0	FALSE	ACH-000178
HS766T_PANCREAS	NRIP1--AF127936.7	5	6	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.0661	0.0793	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS766T_PANCREAS	0.85	1	0.1454	FALSE	292	1546	117	613	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-ATP6--MT-CO1	6	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	7065	24590	0	0	0.0793	0.0132	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS766T_PANCREAS	0	0	0.0925	FALSE	183	104	9	328	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-CO3--MT-ATP6	3	11	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.93	0.0396	0.1454	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS766T_PANCREAS	0.93	1	0.185	FALSE	189	492	56	216	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-ND4--MT-CO1	3	11	MT-ND4	2122	chrM:11881:+	MT-CO1	5909	chrM:6434:+	INCL_NON_REF_SPLICE	NO	9725	22756	0	0	0.0396	0.1454	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS766T_PANCREAS	0	0	0.185	FALSE	19	92	11	16	0	FALSE	ACH-000178
HS766T_PANCREAS	PODXL--MT-ND4L	5	3	PODXL	8405	chr7:131190729:-	MT-ND4L	16755	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1394	0	0.01	1	0.0661	0.0396	PODXL->chr7:131185021-131242976:-,podocalyxin_like,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS766T_PANCREAS	0.01	1	0.1057	FALSE	0	0	0	5	0	FALSE	ACH-000178
HS766T_PANCREAS	NRIP1--AF127936.7	3	10	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.45	1	0.0396	0.1321	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS766T_PANCREAS	0.45	1	0.1717	FALSE	164	806	69	479	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-ND6--MT-TE	5	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0.0132	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS766T_PANCREAS	1	1	0.0793	FALSE	499	1288	110	792	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-TA--MT-TC	4	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0.0661	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS766T_PANCREAS	1	1	0.119	FALSE	462	80	0	856	0	FALSE	ACH-000178
HS766T_PANCREAS	EIF4G1--DNAJA3	5	0	EIF4G1	14880	chr3:184046544:+	DNAJA3	28435	chr16:4491507:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0661	0	EIF4G1->Oncogene{Bushman},chr3:184032283-184053146:+,eukaryotic_translation_initiation_factor_4_gamma_1,DNAJA3->DnaJ_heat_shock_protein_family_(Hsp40)_member_A3,chr16:4475806-4506776:+	HS766T_PANCREAS	1	1	0.0661	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	MT-ND6--MT-TE	4	4	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.0529	0.0529	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS766T_PANCREAS	0.73	1	0.1058	FALSE	499	1288	110	792	0	FALSE	ACH-000178
HS766T_PANCREAS	ACTN4--MT-CO1	4	2	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	1121	24631	0.01	0	0.0529	0.0264	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS766T_PANCREAS	0	0.01	0.0793	FALSE	0	0	0	30	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-ATP6--MT-CO1	4	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7197	24987	0	0	0.0529	0.0264	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS766T_PANCREAS	0	0	0.0793	FALSE	183	104	9	328	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-ND4--MT-CO1	4	2	MT-ND4	1234	chrM:10993:+	MT-CO1	6016	chrM:6541:+	INCL_NON_REF_SPLICE	YES	12624	24632	0	0	0.0529	0.0264	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS766T_PANCREAS	0	0	0.0793	FALSE	19	89	11	16	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-ND4--MT-CO1	4	2	MT-ND4	1802	chrM:11561:+	MT-CO1	6532	chrM:7057:+	INCL_NON_REF_SPLICE	YES	15264	22895	0	0	0.0529	0.0264	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS766T_PANCREAS	0	0	0.0793	FALSE	19	92	11	16	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-ND4--MT-CO1	3	6	MT-ND4	1773	chrM:11532:+	MT-CO1	5916	chrM:6441:+	INCL_NON_REF_SPLICE	NO	15435	22930	0	0	0.0396	0.0793	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS766T_PANCREAS	0	0	0.1189	FALSE	19	92	11	16	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-ND6--MT-TE	3	4	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.64	1	0.0396	0.0529	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS766T_PANCREAS	0.64	1	0.0925	FALSE	499	1288	110	792	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS766T_PANCREAS	1	1	0.0529	FALSE	499	1288	110	792	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS766T_PANCREAS	1	1	0.0529	FALSE	462	80	0	856	0	FALSE	ACH-000178
HS766T_PANCREAS	RP11-680G10.1--GSE1	3	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	8	1	0.47	0.0396	0.0529	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS766T_PANCREAS	0.47	1	0.0925	TRUE	465	1949	224	605	0	FALSE	ACH-000178
HS766T_PANCREAS	ZCCHC11--ARIH2	4	0	ZCCHC11	42910	chr1:52875156:-	ARIH2	52844	chr3:48964895:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	GTEx_FI:{Muscle=[count:6=pct:2.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},ZCCHC11->chr1:52873954-53019159:-,zinc_finger_CCHC-type_containing_11,ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+	HS766T_PANCREAS	1	1	0.0529	TRUE	9	30	5	4	0	FALSE	ACH-000178
HS766T_PANCREAS	MT-CO3--MT-ATP6	3	3	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0396	0.0396	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS766T_PANCREAS	0.86	1	0.0792	FALSE	189	492	56	216	0	FALSE	ACH-000178
HS766T_PANCREAS	RP11-255B23.4--CASC8	3	1	RP11-255B23.4	2391	chr8:128200030:-	CASC8	12367	chr8:128433208:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0396	0.0132	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HS766T_PANCREAS	0.44	1	0.0528	TRUE	0	1	0	2	1	TRUE	ACH-000178
HS766T_PANCREAS	COA1--STK17A	3	0	COA1	1289	chr7:43769028:-	STK17A	27976	chr7:43635500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	NEIGHBORS_OVERLAP:-:+:[18330],COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,STK17A->chr7:43622357-43666385:+,serine/threonine_kinase_17a	HS766T_PANCREAS	1	1	0.0396	FALSE	0	3	1	13	0	FALSE	ACH-000178
HS766T_PANCREAS	RP11-444D3.1--SOX5	1	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	1	0	0.86	1	0.0132	0.0661	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS766T_PANCREAS	0.86	1	0.0793	TRUE	274	363	69	150	0	FALSE	ACH-000178
HS766T_PANCREAS	HNRNPM--PIGV	2	0	HNRNPM	5233	chr19:8528570:+	PIGV	28330	chr1:27124054:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,PIGV->chr1:27113963-27124889:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_V	HS766T_PANCREAS	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	HPS1--SNHG7	2	0	HPS1	3352	chr10:100202881:-	SNHG7	24076	chr9:139621538:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	HPS1->HPS1,_biogenesis_of_lysosomal_organelles_complex_3_subunit_1,chr10:100175955-100206684:-,SNHG7->chr9:139615818-139622636:-,small_nucleolar_RNA_host_gene_7	HS766T_PANCREAS	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	PRSS23--PICALM	2	0	PRSS23	8412	chr11:86534635:+	PICALM	25674	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},PRSS23->chr11:86502101-86663952:+,protease,_serine_23,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	HS766T_PANCREAS	1	1	0.0264	TRUE	0	3	0	5	0	TRUE	ACH-000178
HS766T_PANCREAS	RBM5--B2M	2	0	RBM5	6902	chr3:50137484:+	B2M	32938	chr15:45009805:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	HS766T_PANCREAS	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	RLIM--FTX	2	0	RLIM	1196	chrX:73834257:-	FTX	27007	chrX:73289419:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	RLIM->chrX:73805052-73834452:-,ring_finger_protein,_LIM_domain_interacting,FTX->FTX_transcript,_XIST_regulator_(non-protein_coding),chrX:73183790-73513409:-	HS766T_PANCREAS	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	SEPT11--PSPC1	2	0	SEPT11	18490	chr4:77952123:+	PSPC1	41174	chr13:20251963:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	SEPT11->chr4:77870856-77961537:+,septin_11,PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	HS766T_PANCREAS	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	TRA2B--ACTB	2	0	TRA2B	1312	chr3:185655613:-	ACTB	26961	chr7:5569294:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS766T_PANCREAS	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	CDH4--GNAS	1	2	CDH4	2257	chr20:59829993:+	GNAS	42120	chr20:57470667:+	ONLY_REF_SPLICE	NO	14	1269	0.18	0	0.0132	0.0264	CDH4->cadherin_4,chr20:59827482-60515673:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HS766T_PANCREAS	0	0.18	0.0396	FALSE	0	3	0	3	0	FALSE	ACH-000178
HS766T_PANCREAS	RP11-1L12.3--SLC5A12	1	2	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0132	0.0264	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	HS766T_PANCREAS	0.25	1	0.0396	TRUE	3	101	0	60	0	FALSE	ACH-000178
HS766T_PANCREAS	TSPAN3--PEAK1	1	2	TSPAN3	8123	chr15:77344727:-	PEAK1	24017	chr15:77474382:-	ONLY_REF_SPLICE	YES	827	6	0	0.33	0.0132	0.0264	LOCAL_REARRANGEMENT:-:[24145],TSPAN3->chr15:77336359-77376326:-,tetraspanin_3,PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1	HS766T_PANCREAS	0	0.33	0.0396	FALSE	0	0	0	1	0	FALSE	ACH-000178
HS766T_PANCREAS	VAPB--GNAS	1	2	VAPB	3372	chr20:56993419:+	GNAS	36861	chr20:57470667:+	ONLY_REF_SPLICE	YES	243	1269	0.01	0	0.0132	0.0264	VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HS766T_PANCREAS	0	0.01	0.0396	FALSE	0	5	0	4	0	FALSE	ACH-000178
HS766T_PANCREAS	ALDH3A1--KRT5	1	1	ALDH3A1	8894	chr17:19642821:-	KRT5	14946	chr12:52912944:-	ONLY_REF_SPLICE	NO	3479	7936	0	0	0.0132	0.0132	GTEx&tcga_normals:10/3694=0.27%,GTEx:0.11%,ALDH3A1->aldehyde_dehydrogenase_3_family_member_A1,chr17:19641297-19652256:-,KRT5->chr12:52908359-52914471:-,keratin_5	HS766T_PANCREAS	0	0	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000178
HS766T_PANCREAS	EPHA4--CHMP1A	1	1	EPHA4	5982	chr2:222428451:-	CHMP1A	35118	chr16:89713739:-	ONLY_REF_SPLICE	YES	58	232	0.03	0.01	0.0132	0.0132	EPHA4->EPH_receptor_A4,chr2:222282747-222438922:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HS766T_PANCREAS	0.01	0.03	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000178
HS766T_PANCREAS	FLNA--CTSD	1	1	FLNA	13277	chrX:153586567:-	CTSD	26911	chr11:1782698:-	ONLY_REF_SPLICE	NO	1533	2376	0	0	0.0132	0.0132	GTEx&tcga_normals:10/3694=0.27%,GTEx:0.08%,FLNA->chrX:153576892-153603006:-,filamin_A,CTSD->cathepsin_D,chr11:1773982-1785222:-	HS766T_PANCREAS	0	0	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000178
HS766T_PANCREAS	GAB2--ALG8	1	1	GAB2	1703	chr11:78128692:-	ALG8	27890	chr11:77838482:-	ONLY_REF_SPLICE	YES	4	281	0.33	0.01	0.0132	0.0132	NEIGHBORS[75637],GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,ALG8->ALG8,_alpha-1,3-glucosyltransferase,chr11:77811982-77850706:-	HS766T_PANCREAS	0.01	0.33	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000178
HS766T_PANCREAS	IRAK2--VHL	1	1	IRAK2	2367	chr3:10219704:+	VHL	21580	chr3:10188198:+	ONLY_REF_SPLICE	NO	145	294	0.01	0.01	0.0132	0.0132	LOCAL_REARRANGEMENT:+:[12645],IRAK2->Oncogene{Bushman},chr3:10206549-10285427:+,interleukin_1_receptor_associated_kinase_2,VHL->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr3:10182692-10193904:+,von_Hippel-Lindau_tumor_suppressor	HS766T_PANCREAS	0.01	0.01	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000178
HS766T_PANCREAS	RB1--ITM2B	1	1	RB1	17872	chr13:48955579:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	137	674	0.01	0	0.0132	0.0132	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	HS766T_PANCREAS	0	0.01	0.0264	FALSE	27	49	8	8	0	FALSE	ACH-000178
HS766T_PANCREAS	RP11-255B23.4--CASC8	1	1	RP11-255B23.4	2391	chr8:128200030:-	CASC8	10585	chr8:128455965:-	ONLY_REF_SPLICE	NO	5	1	0.29	0.67	0.0132	0.0132	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HS766T_PANCREAS	0.29	0.67	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000178
HS766T_PANCREAS	ZNF738--CHMP1A	1	1	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	23	232	0.08	0.01	0.0132	0.0132	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HS766T_PANCREAS	0.01	0.08	0.0264	FALSE	1	20	1	28	3	FALSE	ACH-000178
KYSE410_OESOPHAGUS	MYEOV--CTD-2530H12.4	209	344	MYEOV	1439	chr11:69062043:+	CTD-2530H12.4	14720	chr11:75305146:+	ONLY_REF_SPLICE	YES	590	0	0.48	1	3.0416	5.0062	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,CTD-2530H12.4->chr11:75294241-75305710:+	KYSE410_OESOPHAGUS	0.48	1	8.0478	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	GSTP1--CPT1A	246	182	GSTP1	2647	chr11:67352712:+	CPT1A	27969	chr11:68530229:-	ONLY_REF_SPLICE	YES	3	4	0.99	0.99	3.58	2.6486	GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1,CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-	KYSE410_OESOPHAGUS	0.99	0.99	6.2286	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	NLK--PRIM2	192	214	NLK	5733	chr17:26449758:+	PRIM2	23494	chr6:57183235:+	ONLY_REF_SPLICE	YES	143	8	0.74	0.98	2.7942	3.1143	NLK->chr17:26368763-26523407:+,nemo_like_kinase,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	KYSE410_OESOPHAGUS	0.74	0.98	5.9085	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	ATM--DPP3	158	42	ATM	1703	chr11:108093913:+	DPP3	87052	chr11:66258724:+	ONLY_REF_SPLICE	YES	5	134	0.98	0.6	2.2994	0.6112	ATM->ATM_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:108093211-108239829:+,DPP3->chr11:66247484-66277130:+,dipeptidyl_peptidase_3	KYSE410_OESOPHAGUS	0.6	0.98	2.9106	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	SHANK2--CARD17	130	79	SHANK2	30935	chr11:70544793:-	CARD17	64502	chr11:104970148:-	ONLY_REF_SPLICE	YES	48	0	0.81	1	1.8919	1.1497	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,CARD17->caspase_recruitment_domain_family_member_17,chr11:104963196-104972158:-	KYSE410_OESOPHAGUS	0.81	1	3.0416	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	UVRAG--DYNC2H1	107	78	UVRAG	1358	chr11:75526569:+	DYNC2H1	115934	chr11:103228971:+	ONLY_REF_SPLICE	YES	62	46	0.75	0.8	1.5572	1.1351	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1	KYSE410_OESOPHAGUS	0.75	0.8	2.6923	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MYEOV--CTD-2530H12.4	21	387	MYEOV	5305	chr11:69066895:+	CTD-2530H12.4	14720	chr11:75305146:+	ONLY_REF_SPLICE	YES	71	0	0.85	1	0.3056	5.632	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,CTD-2530H12.4->chr11:75294241-75305710:+	KYSE410_OESOPHAGUS	0.85	1	5.9376	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MB21D2--FGF12	79	106	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	8	35	0.96	0.84	1.1497	1.5426	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	KYSE410_OESOPHAGUS	0.84	0.96	2.6923	FALSE	0	17	0	46	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	C6orf48--MSH5	79	85	C6orf48	4904	chr6:31807395:+	MSH5	20380	chr6:31725942:+	INCL_NON_REF_SPLICE	YES	123	150	0.57	0.52	1.1497	1.237	LOCAL_REARRANGEMENT:+:[69763],C6orf48->chr6:31802385-31807541:+,chromosome_6_open_reading_frame_48,MSH5->chr6:31707725-31732622:+,mutS_homolog_5	KYSE410_OESOPHAGUS	0.52	0.57	2.3867	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	UBE2M--EYS	90	25	UBE2M	1688	chr19:59069640:-	EYS	9346	chr6:66205886:-	ONLY_REF_SPLICE	YES	230	0	0.33	1	1.3098	0.3638	UBE2M->chr19:59067079-59070327:-,ubiquitin_conjugating_enzyme_E2_M,EYS->chr6:64429876-66417118:-,eyes_shut_homolog_(Drosophila)	KYSE410_OESOPHAGUS	0.33	1	1.6736	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	RBL1--CA8	68	67	RBL1	12024	chr20:35675456:-	CA8	40414	chr8:61102544:-	ONLY_REF_SPLICE	YES	37	0	0.78	1	0.9896	0.975	RBL1->Oncogene{Bushman},chr20:35624752-35724398:-,chr20:35724188-35725581:+,retinoblastoma-like_1,CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-	KYSE410_OESOPHAGUS	0.78	1	1.9646	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MB21D1--RP11-505P4.7	64	80	MB21D1	2972	chr6:74155251:-	RP11-505P4.7	16202	chr6:74280010:+	ONLY_REF_SPLICE	YES	122	0	0.54	1	0.9314	1.1642	LOCAL_INVERSION:-:+:[71342],MB21D1->Mab-21_domain_containing_1,chr6:74123238-74161999:-,RP11-505P4.7->chr6:74233341-74280319:+	KYSE410_OESOPHAGUS	0.54	1	2.0956	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	TIMM23B--LINC00843	54	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7859	0.3638	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KYSE410_OESOPHAGUS	1	1	1.1497	TRUE	508	994	45	981	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	FBXO22--COMMD4	49	25	FBXO22	7073	chr15:76209735:+	COMMD4	17793	chr15:75630403:+	ONLY_REF_SPLICE	YES	145	5	0.34	0.94	0.7131	0.3638	FBXO22->F-box_protein_22,chr15:76196200-76227609:+,COMMD4->COMM_domain_containing_4,chr15:75628232-75634268:+	KYSE410_OESOPHAGUS	0.34	0.94	1.0769	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	SUV420H1--SHANK2	8	189	SUV420H1	1352	chr11:67980944:-	SHANK2	45470	chr11:70742672:-	ONLY_REF_SPLICE	YES	25	3	0.89	0.98	0.1164	2.7505	SUV420H1->chr11:67922330-67981295:-,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	KYSE410_OESOPHAGUS	0.89	0.98	2.8669	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	SUV420H1--SHANK2	1	209	SUV420H1	1691	chr11:67980605:-	SHANK2	45470	chr11:70742672:-	ONLY_REF_SPLICE	YES	37	3	0.85	0.99	0.0146	3.0416	SUV420H1->chr11:67922330-67981295:-,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	KYSE410_OESOPHAGUS	0.85	0.99	3.0562	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND6--MT-TE	45	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6549	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE410_OESOPHAGUS	1	1	0.6549	FALSE	499	1288	110	792	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND6--MT-TE	41	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.5967	0.0291	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE410_OESOPHAGUS	0.93	1	0.6258	FALSE	499	1288	110	792	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	TRIM29--UVRAG	36	20	TRIM29	18786	chr11:119986046:-	UVRAG	46542	chr11:75776754:+	ONLY_REF_SPLICE	YES	122	25	0.31	0.69	0.5239	0.2911	TRIM29->chr11:119981983-120056237:-,tripartite_motif_containing_29,UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+	KYSE410_OESOPHAGUS	0.31	0.69	0.815	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	SHANK2--CARD17	27	44	SHANK2	30935	chr11:70544793:-	CARD17	65561	chr11:104963311:-	ONLY_REF_SPLICE	YES	48	0	0.6	1	0.3929	0.6403	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,CARD17->caspase_recruitment_domain_family_member_17,chr11:104963196-104972158:-	KYSE410_OESOPHAGUS	0.6	1	1.0332	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	GDPD5--WNT11	30	31	GDPD5	22251	chr11:75160022:-	WNT11	39010	chr11:75907762:-	ONLY_REF_SPLICE	YES	34	0	0.64	1	0.4366	0.4511	GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5,WNT11->Wnt_family_member_11,chr11:75897369-75921780:-	KYSE410_OESOPHAGUS	0.64	1	0.8877	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	TIMM23--RP11-464F9.1	34	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	163	4	0.19	0.9	0.4948	0.0582	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KYSE410_OESOPHAGUS	0.19	0.9	0.553	TRUE	519	3926	326	965	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	GSTP1--CPT1A	6	94	GSTP1	2178	chr11:67352243:+	CPT1A	27969	chr11:68530229:-	ONLY_REF_SPLICE	YES	69	4	0.59	0.96	0.0873	1.368	GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1,CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-	KYSE410_OESOPHAGUS	0.59	0.96	1.4553	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MT-ATP8	25	6	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	33395	0	0	1	0.3638	0.0873	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0	1	0.4511	FALSE	231	217	16	283	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	ZMYND8--SULF2	18	28	ZMYND8	14364	chr20:45915973:-	SULF2	44224	chr20:46331414:-	ONLY_REF_SPLICE	YES	86	51	0.35	0.47	0.262	0.4075	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	KYSE410_OESOPHAGUS	0.35	0.47	0.6695	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	ATM--DPP3	12	45	ATM	2203	chr11:108094413:+	DPP3	87052	chr11:66258724:+	ONLY_REF_SPLICE	YES	16	134	0.78	0.3	0.1746	0.6549	ATM->ATM_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:108093211-108239829:+,DPP3->chr11:66247484-66277130:+,dipeptidyl_peptidase_3	KYSE410_OESOPHAGUS	0.3	0.78	0.8295	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	GLCE--PTPN9	16	28	GLCE	1174	chr15:69453096:+	PTPN9	25854	chr15:75782642:-	ONLY_REF_SPLICE	YES	27	66	0.62	0.4	0.2328	0.4075	GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase,PTPN9->chr15:75759462-75871630:-,protein_tyrosine_phosphatase,_non-receptor_type_9	KYSE410_OESOPHAGUS	0.4	0.62	0.6403	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MT-ATP6--MT-CO1	21	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	24717	40402	0	0	0.3056	0.0291	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE410_OESOPHAGUS	0	0	0.3347	FALSE	183	104	9	328	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MT-ATP8	20	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	25469	2	0	0.92	0.2911	0.0437	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0	0.92	0.3348	FALSE	230	193	14	283	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND6--MT-TE	20	2	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.2911	0.0291	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE410_OESOPHAGUS	0.88	1	0.3202	FALSE	499	1288	110	792	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	NLK--PRIM2	7	54	NLK	2595	chr17:26370357:+	PRIM2	23494	chr6:57183235:+	ONLY_REF_SPLICE	YES	315	8	0.16	0.88	0.1019	0.7859	NLK->chr17:26368763-26523407:+,nemo_like_kinase,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	KYSE410_OESOPHAGUS	0.16	0.88	0.8878	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	GIGYF2--DNER	20	0	GIGYF2	1094	chr2:233562102:+	DNER	66254	chr2:230341969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2911	0	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,DNER->chr2:230222345-230579274:-,delta/notch_like_EGF_repeat_containing	KYSE410_OESOPHAGUS	1	1	0.2911	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	C15orf57--CBX3	14	20	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	67	35	0.34	0.49	0.2037	0.2911	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KYSE410_OESOPHAGUS	0.34	0.49	0.4948	TRUE	267	562	48	632	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	OSBPL1A--ULK4	15	14	OSBPL1A	25090	chr18:21819184:-	ULK4	74259	chr3:41746797:-	ONLY_REF_SPLICE	YES	85	6	0.25	0.83	0.2183	0.2037	OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	KYSE410_OESOPHAGUS	0.25	0.83	0.422	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MTND4LP1	18	1	MT-ND4	1073	chrM:10832:+	MTND4LP1	5391	chrX:125606723:+	INCL_NON_REF_SPLICE	YES	11327	0	0	1	0.262	0.0146	MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MTND4LP1->chrX:125606711-125606867:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L_pseudogene_1	KYSE410_OESOPHAGUS	0	1	0.2766	FALSE	1	0	0	2	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	ZMYND8--SULF2	8	34	ZMYND8	14364	chr20:45915973:-	SULF2	42833	chr20:46335647:-	ONLY_REF_SPLICE	YES	86	55	0.33	0.43	0.1164	0.4948	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	KYSE410_OESOPHAGUS	0.33	0.43	0.6112	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	RNF170--THBD	14	7	RNF170	4293	chr8:42742871:-	THBD	21504	chr20:23027446:-	INCL_NON_REF_SPLICE	YES	10	46	0.68	0.31	0.2037	0.1019	RNF170->chr8:42704780-42752433:-,ring_finger_protein_170,THBD->chr20:23026270-23030378:-,thrombomodulin	KYSE410_OESOPHAGUS	0.31	0.68	0.3056	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	NLK--PRIM2	1	57	NLK	5733	chr17:26449758:+	PRIM2	24657	chr6:57185255:+	ONLY_REF_SPLICE	YES	143	723	0.29	0.07	0.0146	0.8295	NLK->chr17:26368763-26523407:+,nemo_like_kinase,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	KYSE410_OESOPHAGUS	0.07	0.29	0.8441	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MT-TC--MT-TY	15	0	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2183	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	KYSE410_OESOPHAGUS	1	1	0.2183	FALSE	51	280	19	36	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	RP11-123O10.4--GRIP1	12	11	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1746	0.1601	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYSE410_OESOPHAGUS	1	1	0.3347	FALSE	416	2512	207	587	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	DENND1A--RP11-85O21.2	14	0	DENND1A	1264	chr9:126692168:-	RP11-85O21.2	44503	chr9:126770370:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2037	0	LOCAL_REARRANGEMENT:-:[76125],DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,RP11-85O21.2->chr9:126768556-126771675:-	KYSE410_OESOPHAGUS	1	1	0.2037	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	PRIM2--CDK12	10	13	PRIM2	8956	chr6:57246966:+	CDK12	40057	chr17:37680927:+	ONLY_REF_SPLICE	YES	400	108	0.05	0.18	0.1455	0.1892	PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	KYSE410_OESOPHAGUS	0.05	0.18	0.3347	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	10	9	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	4	0	0.83	1	0.1455	0.131	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KYSE410_OESOPHAGUS	0.83	1	0.2765	FALSE	20	187	4	79	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	UVRAG--DYNC2H1	4	30	UVRAG	1358	chr11:75526569:+	DYNC2H1	117051	chr11:103270391:+	ONLY_REF_SPLICE	YES	62	118	0.35	0.22	0.0582	0.4366	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1	KYSE410_OESOPHAGUS	0.22	0.35	0.4948	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND3--MT-ATP8	11	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1601	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	1	1	0.1601	FALSE	351	233	23	137	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MT-ATP8	10	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	25469	4	0	0.76	0.1455	0.0437	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0	0.76	0.1892	FALSE	230	193	14	283	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	C15orf57--CBX3	6	16	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	67	37	0.25	0.37	0.0873	0.2328	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KYSE410_OESOPHAGUS	0.25	0.37	0.3201	TRUE	267	562	48	632	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	ANP32A--GOLGA6C	7	11	ANP32A	1200	chr15:69113037:-	GOLGA6C	24417	chr15:75557958:+	ONLY_REF_SPLICE	YES	630	0	0.03	1	0.1019	0.1601	ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-,GOLGA6C->chr15:75550940-75562540:+,golgin_A6_family_member_C	KYSE410_OESOPHAGUS	0.03	1	0.262	TRUE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MT-ATP8	9	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	25663	4	0	0.75	0.131	0.0437	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0	0.75	0.1747	FALSE	230	198	14	283	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ATP6--MT-CO1	9	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	20913	40626	0	0	0.131	0.0291	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE410_OESOPHAGUS	0	0	0.1601	FALSE	183	104	9	328	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	DYNC2H1--BIRC2	6	13	DYNC2H1	84560	chr11:103194718:+	BIRC2	104373	chr11:102248227:+	ONLY_REF_SPLICE	YES	45	719	0.3	0.03	0.0873	0.1892	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	KYSE410_OESOPHAGUS	0.03	0.3	0.2765	TRUE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND6--MT-TE	9	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.131	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE410_OESOPHAGUS	1	1	0.131	FALSE	499	1288	110	792	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MT-ATP8	3	22	MT-ND4	2324	chrM:12083:+	MT-ATP8	5419	chrM:8406:+	INCL_NON_REF_SPLICE	YES	10	0	0.71	1	0.0437	0.3202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0.71	1	0.3639	FALSE	209	205	15	279	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MT-ATP8	8	2	MT-ND4	1112	chrM:10871:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	15821	0	0	1	0.1164	0.0291	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0	1	0.1455	FALSE	230	193	14	283	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	RP11-114H23.1--RP11-114H23.2	7	6	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	5	0	0.72	1	0.1019	0.0873	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	KYSE410_OESOPHAGUS	0.72	1	0.1892	FALSE	81	155	12	160	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-TC--MT-TY	8	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1164	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	KYSE410_OESOPHAGUS	1	1	0.1164	FALSE	51	280	19	36	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	GLCE--PTPN9	3	17	GLCE	1174	chr15:69453096:+	PTPN9	28440	chr15:75772255:-	ONLY_REF_SPLICE	YES	27	60	0.43	0.25	0.0437	0.2474	GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase,PTPN9->chr15:75759462-75871630:-,protein_tyrosine_phosphatase,_non-receptor_type_9	KYSE410_OESOPHAGUS	0.25	0.43	0.2911	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MT-ATP8	5	9	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	33548	1938	0	0.01	0.0728	0.131	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0	0.01	0.2038	FALSE	231	217	16	283	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	C15orf57--CBX3	3	16	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	67	37	0.22	0.34	0.0437	0.2328	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KYSE410_OESOPHAGUS	0.22	0.34	0.2765	TRUE	267	562	48	632	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND3--MT-ATP8	7	0	MT-ND3	1094	chrM:10152:+	MT-ATP8	4474	chrM:8493:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1019	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	1	1	0.1019	FALSE	351	233	23	137	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MT-ATP8	4	12	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	33541	0	0	1	0.0582	0.1746	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0	1	0.2328	FALSE	231	217	16	283	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	ZMYND8--SULF2	3	16	ZMYND8	13308	chr20:45918931:-	SULF2	44224	chr20:46331414:-	ONLY_REF_SPLICE	YES	98	51	0.16	0.27	0.0437	0.2328	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	KYSE410_OESOPHAGUS	0.16	0.27	0.2765	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MT-ATP6--MT-CO1	6	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	20319	39801	0	0	0.0873	0.0291	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE410_OESOPHAGUS	0	0	0.1164	FALSE	183	104	9	328	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	SPTLC2--TRAV1-2	5	6	SPTLC2	11403	chr14:78018439:-	TRAV1-2	25544	chr14:22111136:+	INCL_NON_REF_SPLICE	YES	79	0	0.12	1	0.0728	0.0873	SPTLC2->chr14:77972340-78083116:-,serine_palmitoyltransferase_long_chain_base_subunit_2,TRAV1-2->T_cell_receptor_alpha_variable_1-2,chr14:22111109-22111798:+	KYSE410_OESOPHAGUS	0.12	1	0.1601	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MT-TW--MT-ND2	6	1	MT-TW	1004	chrM:5515:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	105	1	0.06	0.0873	0.0146	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KYSE410_OESOPHAGUS	0.06	1	0.1019	FALSE	14	0	0	19	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MT-ATP8	3	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	29715	201	0	0.07	0.0437	0.1746	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0	0.07	0.2183	FALSE	231	217	16	283	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MT-ATP8	3	12	MT-ND4	1984	chrM:11743:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	30723	4	0	0.79	0.0437	0.1746	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0	0.79	0.2183	FALSE	231	217	16	283	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MTO1--CD109	5	4	MTO1	13102	chr6:74207619:+	CD109	28444	chr6:74432974:+	ONLY_REF_SPLICE	YES	136	85	0.06	0.1	0.0728	0.0582	MTO1->chr6:74171301-74218959:+,mitochondrial_tRNA_translation_optimization_1,CD109->CD109_molecule,Oncogene{Bushman},chr6:74405508-74538040:+	KYSE410_OESOPHAGUS	0.06	0.1	0.131	TRUE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	RP11-123O10.4--GRIP1	5	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0728	0.0582	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYSE410_OESOPHAGUS	1	1	0.131	FALSE	93	270	15	244	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	ACTR2--RAB1A	4	7	ACTR2	1205	chr2:65455091:+	RAB1A	21356	chr2:65325200:-	ONLY_REF_SPLICE	YES	424	808	0.03	0.01	0.0582	0.1019	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[97647],ACTR2->ARP2_actin-related_protein_2_homolog_(yeast),chr2:65454887-65498387:+,RAB1A->Oncogene{Bushman},RAB1A,_member_RAS_oncogene_family,chr2:65297835-65357240:-	KYSE410_OESOPHAGUS	0.01	0.03	0.1601	TRUE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	CUL5--DNAL1	3	11	CUL5	10862	chr11:107944224:+	DNAL1	27544	chr14:74117870:+	ONLY_REF_SPLICE	YES	108	0	0.11	1	0.0437	0.1601	CUL5->chr11:107879459-107978503:+,cullin_5,DNAL1->chr14:74111578-74170435:+,dynein_axonemal_light_chain_1	KYSE410_OESOPHAGUS	0.11	1	0.2038	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	RP11-123O10.4--GRIP1	3	11	RP11-123O10.4	2167	chr12:67285681:-	GRIP1	11081	chr12:66990707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0437	0.1601	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYSE410_OESOPHAGUS	1	1	0.2038	FALSE	0	5	0	12	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	SCFD2--POLR2B	5	3	SCFD2	5445	chr4:54139993:-	POLR2B	21163	chr4:57860570:+	ONLY_REF_SPLICE	YES	43	266	0.16	0.03	0.0728	0.0437	SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,POLR2B->chr4:57843888-57897334:+,polymerase_(RNA)_II_subunit_B	KYSE410_OESOPHAGUS	0.03	0.16	0.1165	TRUE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	CDK5RAP2--STOM	4	6	CDK5RAP2	14744	chr9:123280705:-	STOM	58164	chr9:124103686:-	ONLY_REF_SPLICE	YES	65	76	0.13	0.12	0.0582	0.0873	CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,STOM->chr9:124101355-124132531:-,stomatin	KYSE410_OESOPHAGUS	0.12	0.13	0.1455	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MT-ATP6--MT-CO1	5	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	20794	40402	0	0	0.0728	0.0291	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE410_OESOPHAGUS	0	0	0.1019	FALSE	183	104	9	328	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MT-ATP8	4	6	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	33744	789	0	0.01	0.0582	0.0873	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0	0.01	0.1455	FALSE	231	217	16	283	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MT-ATP8	3	10	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	33846	4	0	0.76	0.0437	0.1455	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0	0.76	0.1892	FALSE	231	217	16	283	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND6--MT-TE	5	2	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.0728	0.0291	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE410_OESOPHAGUS	0.7	1	0.1019	FALSE	499	1288	110	792	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND6--MT-TE	5	2	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.0728	0.0291	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE410_OESOPHAGUS	0.7	1	0.1019	FALSE	499	1288	110	792	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND6--MT-TE	5	2	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	6	0	0.54	1	0.0728	0.0291	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE410_OESOPHAGUS	0.54	1	0.1019	FALSE	499	1288	110	792	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	RPSAP52--HMGA2	5	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	13	199	0.35	0.03	0.0728	0.0291	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	KYSE410_OESOPHAGUS	0.03	0.35	0.1019	FALSE	0	59	0	125	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MT-ATP8	3	9	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	33522	0	0	1	0.0437	0.131	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0	1	0.1747	FALSE	231	217	16	283	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	UVRAG--DYNC2H1	2	13	UVRAG	1358	chr11:75526569:+	DYNC2H1	118261	chr11:103306671:+	ONLY_REF_SPLICE	YES	62	250	0.19	0.06	0.0291	0.1892	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1	KYSE410_OESOPHAGUS	0.06	0.19	0.2183	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	FAM179B--RP11-945F5.1	4	4	FAM179B	3260	chr14:45433670:+	RP11-945F5.1	34357	chr14:46037729:+	ONLY_REF_SPLICE	YES	12	0	0.4	1	0.0582	0.0582	FAM179B->chr14:45431411-45543634:+,family_with_sequence_similarity_179_member_B,RP11-945F5.1->chr14:46037198-46038272:+	KYSE410_OESOPHAGUS	0.4	1	0.1164	TRUE	0	1	0	2	1	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MCM3AP-AS1--LSS	5	0	MCM3AP-AS1	1050	chr21:47649180:+	LSS	22134	chr21:47639486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0728	0	LOCAL_INVERSION:+:-:[393],MCM3AP-AS1->MCM3AP_antisense_RNA_1,chr21:47649131-47679304:+,LSS->chr21:47608055-47648738:-,lanosterol_synthase_(2,3-oxidosqualene-lanosterol_cyclase)	KYSE410_OESOPHAGUS	1	1	0.0728	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MT-ATP8	3	8	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	37143	201	0	0.05	0.0437	0.1164	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0	0.05	0.1601	FALSE	231	217	16	283	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MT-ATP8	3	8	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	37051	1040	0	0.01	0.0437	0.1164	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0	0.01	0.1601	FALSE	231	217	16	283	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	SEMA3C--AC003988.1	4	3	SEMA3C	9675	chr7:80456741:-	AC003988.1	35722	chr7:79932279:-	ONLY_REF_SPLICE	YES	519	0	0.01	1	0.0582	0.0437	SEMA3C->chr7:80371854-80551675:-,semaphorin_3C,AC003988.1->chr7:79875725-79941772:-	KYSE410_OESOPHAGUS	0.01	1	0.1019	TRUE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	CUL5--DNAL1	3	6	CUL5	10862	chr11:107944224:+	DNAL1	29752	chr14:74121550:+	ONLY_REF_SPLICE	YES	108	8	0.08	0.53	0.0437	0.0873	CUL5->chr11:107879459-107978503:+,cullin_5,DNAL1->chr14:74111578-74170435:+,dynein_axonemal_light_chain_1	KYSE410_OESOPHAGUS	0.08	0.53	0.131	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MT-ATP8	3	6	MT-ND4	1386	chrM:11145:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	33744	0	0	1	0.0437	0.0873	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0	1	0.131	FALSE	231	217	16	283	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	NRIP1--AF127936.7	3	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.26	1	0.0437	0.0873	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE410_OESOPHAGUS	0.26	1	0.131	FALSE	164	806	69	479	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND3--MT-CO3	4	1	MT-ND3	1064	chrM:10122:+	MT-CO3	5089	chrM:9949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0.0146	LOCAL_REARRANGEMENT:+:[69],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	KYSE410_OESOPHAGUS	1	1	0.0728	FALSE	2	2	0	11	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-TW--MT-ND2	4	1	MT-TW	1005	chrM:5516:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	105	1	0.05	0.0582	0.0146	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KYSE410_OESOPHAGUS	0.05	1	0.0728	FALSE	14	0	0	19	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0582	0.0146	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE410_OESOPHAGUS	1	1	0.0728	FALSE	292	1546	117	613	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	NTN4--CDK17	3	5	NTN4	10597	chr12:96076483:-	CDK17	27981	chr12:96694138:-	ONLY_REF_SPLICE	YES	183	60	0.04	0.12	0.0437	0.0728	NTN4->chr12:96051583-96184930:-,netrin_4,CDK17->chr12:96672039-96794338:-,cyclin-dependent_kinase_17	KYSE410_OESOPHAGUS	0.04	0.12	0.1165	TRUE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MTND4LP1	4	0	MT-ND4	1061	chrM:10820:+	MTND4LP1	5515	chrX:125606847:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MTND4LP1->chrX:125606711-125606867:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L_pseudogene_1	KYSE410_OESOPHAGUS	1	1	0.0582	FALSE	1	0	0	2	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND6--MT-TE	3	4	MT-ND6	1302	chrM:14372:-	MT-TE	4520	chrM:14748:-	INCL_NON_REF_SPLICE	YES	6	0	0.54	1	0.0437	0.0582	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE410_OESOPHAGUS	0.54	1	0.1019	FALSE	499	1288	110	792	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND6--MT-TE	3	4	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0437	0.0582	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE410_OESOPHAGUS	0.88	1	0.1019	FALSE	499	1288	110	792	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE410_OESOPHAGUS	1	1	0.0582	FALSE	499	1288	110	792	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE410_OESOPHAGUS	1	1	0.0582	FALSE	499	1288	110	792	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	TET1--DDX21	4	0	TET1	5177	chr10:70360791:+	DDX21	25038	chr10:70719562:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0582	0	TET1->Oncogene{Bushman},chr10:70320413-70454239:+,tet_methylcytosine_dioxygenase_1,DDX21->DEAD-box_helicase_21,chr10:70715884-70744829:+	KYSE410_OESOPHAGUS	1	1	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	CUL5--DNAL1	2	7	CUL5	10862	chr11:107944224:+	DNAL1	28706	chr14:74119873:+	ONLY_REF_SPLICE	YES	108	7	0.08	0.56	0.0291	0.1019	CUL5->chr11:107879459-107978503:+,cullin_5,DNAL1->chr14:74111578-74170435:+,dynein_axonemal_light_chain_1	KYSE410_OESOPHAGUS	0.08	0.56	0.131	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MT-ATP6--MT-CO1	3	3	MT-ATP6	1221	chrM:8747:+	MT-CO1	5318	chrM:6540:+	INCL_NON_REF_SPLICE	NO	29245	39668	0	0	0.0437	0.0437	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE410_OESOPHAGUS	0	0	0.0874	FALSE	183	104	9	328	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	OSBPL1A--ULK4	2	7	OSBPL1A	25090	chr18:21819184:-	ULK4	75508	chr3:41723295:-	ONLY_REF_SPLICE	YES	85	4	0.1	0.69	0.0291	0.1019	OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	KYSE410_OESOPHAGUS	0.1	0.69	0.131	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	ZNF131--C5orf51	3	3	ZNF131	12695	chr5:43123412:+	C5orf51	29224	chr5:41907838:+	ONLY_REF_SPLICE	YES	88	40	0.06	0.13	0.0437	0.0437	ZNF131->chr5:43065278-43192123:+,zinc_finger_protein_131,C5orf51->chr5:41904290-41921738:+,chromosome_5_open_reading_frame_51	KYSE410_OESOPHAGUS	0.06	0.13	0.0874	TRUE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MT-ATP8	3	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	32654	2216	0	0	0.0437	0.0291	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0	0	0.0728	FALSE	231	217	16	283	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND6--MT-TE	3	2	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	6	0	0.45	1	0.0437	0.0291	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE410_OESOPHAGUS	0.45	1	0.0728	FALSE	499	1288	110	792	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND6--MT-TE	3	2	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.0437	0.0291	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE410_OESOPHAGUS	0.71	1	0.0728	FALSE	499	1288	110	792	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	RP11-344E13.3--UBBP4	1	10	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	NO	35	0	0.24	1	0.0146	0.1455	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	KYSE410_OESOPHAGUS	0.24	1	0.1601	TRUE	23	13	0	54	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND3--MT-ATP8	3	1	MT-ND3	1255	chrM:10313:+	MT-ATP8	4443	chrM:8462:+	INCL_NON_REF_SPLICE	NO	28	2	0.12	0.67	0.0437	0.0146	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE410_OESOPHAGUS	0.12	0.67	0.0583	FALSE	351	233	23	137	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MTND4LP1	3	1	MT-ND4	1110	chrM:10869:+	MTND4LP1	5388	chrX:125606720:+	INCL_NON_REF_SPLICE	YES	15540	0	0	1	0.0437	0.0146	MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MTND4LP1->chrX:125606711-125606867:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L_pseudogene_1	KYSE410_OESOPHAGUS	0	1	0.0583	FALSE	1	0	0	2	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MTND4LP1	3	1	MT-ND4	1144	chrM:10903:+	MTND4LP1	5402	chrX:125606734:+	INCL_NON_REF_SPLICE	NO	19342	0	0	1	0.0437	0.0146	MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MTND4LP1->chrX:125606711-125606867:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L_pseudogene_1	KYSE410_OESOPHAGUS	0	1	0.0583	FALSE	1	0	0	2	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-TW--MT-ND2	3	1	MT-TW	1030	chrM:5541:+	MT-ND2	4894	chrM:5295:+	INCL_NON_REF_SPLICE	YES	0	78	1	0.05	0.0437	0.0146	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KYSE410_OESOPHAGUS	0.05	1	0.0583	FALSE	14	0	0	19	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	PLEC--CCDC85C	3	1	PLEC	2231	chr8:145049345:-	CCDC85C	45422	chr14:100002425:-	ONLY_REF_SPLICE	YES	62	30	0.06	0.12	0.0437	0.0146	PLEC->chr8:144989321-145050902:-,plectin,CCDC85C->chr14:99977603-100070363:-,coiled-coil_domain_containing_85C	KYSE410_OESOPHAGUS	0.06	0.12	0.0583	TRUE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	PTPN13--AFF1	3	1	PTPN13	9224	chr4:87614827:+	AFF1	59592	chr4:87967318:+	ONLY_REF_SPLICE	YES	19	8	0.17	0.33	0.0437	0.0146	GTEx&tcga_normals:1/3694=0.03%,PTPN13->Oncogene{Bushman},chr4:87515468-87736324:+,protein_tyrosine_phosphatase,_non-receptor_type_13,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	KYSE410_OESOPHAGUS	0.17	0.33	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	ZMYND8--SULF2	2	5	ZMYND8	14364	chr20:45915973:-	SULF2	45376	chr20:46319039:-	ONLY_REF_SPLICE	YES	86	61	0.08	0.1	0.0291	0.0728	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	KYSE410_OESOPHAGUS	0.08	0.1	0.1019	TRUE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MT-ND4--MTND4LP1	3	0	MT-ND4	1588	chrM:11347:+	MTND4LP1	5522	chrX:125606854:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0437	0	MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MTND4LP1->chrX:125606711-125606867:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L_pseudogene_1	KYSE410_OESOPHAGUS	1	1	0.0437	FALSE	1	0	0	2	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	NRIP1--AF127936.7	2	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.29	1	0.0291	0.0437	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE410_OESOPHAGUS	0.29	1	0.0728	FALSE	125	705	46	456	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0291	0.0437	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE410_OESOPHAGUS	0.83	1	0.0728	FALSE	407	2205	196	549	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	2	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	4	2	0.5	0.67	0.0291	0.0291	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KYSE410_OESOPHAGUS	0.5	0.67	0.0582	FALSE	33	240	4	98	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	PDGFC--RXFP1	2	2	PDGFC	6350	chr4:157771373:-	RXFP1	30545	chr4:159514553:+	ONLY_REF_SPLICE	NO	59	0	0.06	1	0.0291	0.0291	PDGFC->chr4:157681606-157892546:-,platelet_derived_growth_factor_C,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	KYSE410_OESOPHAGUS	0.06	1	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	MCM3AP-AS1--LSS	1	5	MCM3AP-AS1	5127	chr21:47656240:+	LSS	22134	chr21:47639486:-	ONLY_REF_SPLICE	YES	25	12	0.19	0.33	0.0146	0.0728	LOCAL_INVERSION:+:-:[393],MCM3AP-AS1->MCM3AP_antisense_RNA_1,chr21:47649131-47679304:+,LSS->chr21:47608055-47648738:-,lanosterol_synthase_(2,3-oxidosqualene-lanosterol_cyclase)	KYSE410_OESOPHAGUS	0.19	0.33	0.0874	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	NLK--PRIM2	1	5	NLK	5733	chr17:26449758:+	PRIM2	28287	chr6:57244699:+	ONLY_REF_SPLICE	NO	143	476	0.04	0.01	0.0146	0.0728	NLK->chr17:26368763-26523407:+,nemo_like_kinase,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	KYSE410_OESOPHAGUS	0.01	0.04	0.0874	FALSE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	OSBPL1A--RP11-130F10.1	2	1	OSBPL1A	26247	chr18:21805006:-	RP11-130F10.1	44764	chr4:178514626:+	ONLY_REF_SPLICE	YES	96	12	0.03	0.2	0.0291	0.0146	OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A,RP11-130F10.1->chr4:178366133-178598280:+	KYSE410_OESOPHAGUS	0.03	0.2	0.0437	TRUE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	RP11-108K3.1--GLDN	2	1	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0291	0.0146	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	KYSE410_OESOPHAGUS	1	1	0.0437	FALSE	0	19	0	46	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	ATP2A2--CAPRIN1	2	0	ATP2A2	5892	chr12:110734542:+	CAPRIN1	39992	chr11:34101175:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+,CAPRIN1->cell_cycle_associated_protein_1,chr11:34073230-34122703:+	KYSE410_OESOPHAGUS	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	ELP2--SLC39A6	2	0	ELP2	1628	chr18:33710034:+	SLC39A6	37556	chr18:33696742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	LOCAL_INVERSION:+:-:[59],ELP2->chr18:33709407-33757909:+,elongator_acetyltransferase_complex_subunit_2,SLC39A6->Oncogene{Bushman},chr18:33688495-33709348:-,solute_carrier_family_39_member_6	KYSE410_OESOPHAGUS	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	ERBB2--COASY	2	0	ERBB2	16192	chr17:37872192:+	COASY	32664	chr17:40715979:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,COASY->Coenzyme_A_synthase,chr17:40713485-40718295:+	KYSE410_OESOPHAGUS	1	1	0.0291	TRUE	0	1	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	NSUN2--MTRR	2	0	NSUN2	2419	chr5:6631986:-	MTRR	41632	chr5:7892840:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	NSUN2->NOP2/Sun_RNA_methyltransferase_family_member_2,chr5:6599352-6633404:-,MTRR->5-methyltetrahydrofolate-homocysteine_methyltransferase_reductase,chr5:7851299-7906138:+	KYSE410_OESOPHAGUS	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	PBK--MCPH1	2	0	PBK	2522	chr8:27690573:-	MCPH1	13294	chr8:6266800:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	PBK->PDZ_binding_kinase,chr8:27667137-27695612:-,MCPH1->Oncogene{Bushman},chr8:6264113-6501144:+,microcephalin_1	KYSE410_OESOPHAGUS	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	1	0.83	0.83	0.0146	0.0582	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE410_OESOPHAGUS	0.83	0.83	0.0728	FALSE	467	2173	244	435	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	TMEM87B--CEP192	2	0	TMEM87B	12798	chr2:112854729:+	CEP192	26720	chr18:12999420:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	TMEM87B->chr2:112812800-112876895:+,transmembrane_protein_87B,CEP192->centrosomal_protein_192,chr18:12991361-13125051:+	KYSE410_OESOPHAGUS	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	RP11-120D5.1--MID1	1	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	2	50	0.67	0.07	0.0146	0.0437	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KYSE410_OESOPHAGUS	0.07	0.67	0.0583	FALSE	16	356	14	466	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.8	0.8	0.0146	0.0437	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE410_OESOPHAGUS	0.8	0.8	0.0583	FALSE	515	4851	409	746	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	SEMA3C--AC004862.6	1	3	SEMA3C	9675	chr7:80456741:-	AC004862.6	45066	chr7:79963083:-	ONLY_REF_SPLICE	NO	519	0	0.01	1	0.0146	0.0437	SEMA3C->chr7:80371854-80551675:-,semaphorin_3C,AC004862.6->chr7:79959508-80014295:-	KYSE410_OESOPHAGUS	0.01	1	0.0583	FALSE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	GDPD5--WNT11	1	2	GDPD5	22251	chr11:75160022:-	WNT11	40246	chr11:75905888:-	ONLY_REF_SPLICE	YES	34	16	0.08	0.16	0.0146	0.0291	GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5,WNT11->Wnt_family_member_11,chr11:75897369-75921780:-	KYSE410_OESOPHAGUS	0.08	0.16	0.0437	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	PDGFC--RXFP1	1	2	PDGFC	6350	chr4:157771373:-	RXFP1	29151	chr4:159493850:+	ONLY_REF_SPLICE	YES	59	0	0.05	1	0.0146	0.0291	PDGFC->chr4:157681606-157892546:-,platelet_derived_growth_factor_C,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	KYSE410_OESOPHAGUS	0.05	1	0.0437	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	PLEC--CCDC85C	1	2	PLEC	7451	chr8:145024352:-	CCDC85C	45422	chr14:100002425:-	ONLY_REF_SPLICE	YES	105	30	0.03	0.09	0.0146	0.0291	PLEC->chr8:144989321-145050902:-,plectin,CCDC85C->chr14:99977603-100070363:-,coiled-coil_domain_containing_85C	KYSE410_OESOPHAGUS	0.03	0.09	0.0437	TRUE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	RP11-1L12.3--SLC5A12	1	2	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	NO	8	0	0.27	1	0.0146	0.0291	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	KYSE410_OESOPHAGUS	0.27	1	0.0437	TRUE	3	101	0	60	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	SEMA3C--AC004862.6	1	2	SEMA3C	9675	chr7:80456741:-	AC004862.6	46450	chr7:79960684:-	ONLY_REF_SPLICE	NO	519	3	0.01	0.5	0.0146	0.0291	SEMA3C->chr7:80371854-80551675:-,semaphorin_3C,AC004862.6->chr7:79959508-80014295:-	KYSE410_OESOPHAGUS	0.01	0.5	0.0437	FALSE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	SIN3A--PTPN9	1	2	SIN3A	20372	chr15:75699396:-	PTPN9	45423	chr15:75809705:-	ONLY_REF_SPLICE	NO	75	59	0.04	0.05	0.0146	0.0291	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},LOCAL_REARRANGEMENT:-:[11279],SIN3A->SIN3_transcription_regulator_family_member_A,chr15:75661720-75748183:-,PTPN9->chr15:75759462-75871630:-,protein_tyrosine_phosphatase,_non-receptor_type_9	KYSE410_OESOPHAGUS	0.04	0.05	0.0437	TRUE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	ACP1--BARD1	1	1	ACP1	4471	chr2:272150:+	BARD1	18536	chr2:215634036:-	ONLY_REF_SPLICE	NO	682	37	0	0.05	0.0146	0.0146	ACP1->acid_phosphatase_1,_soluble,chr2:264140-278283:+,BARD1->ArcherDX_panel,BRCA1_associated_RING_domain_1,FoundationOne_panel,Oncogene{Bushman},chr2:215590370-215674428:-	KYSE410_OESOPHAGUS	0	0.05	0.0292	FALSE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	KCNIP3--PTP4A1	1	1	KCNIP3	10118	chr2:96012870:+	PTP4A1	26694	chr6:64286341:+	ONLY_REF_SPLICE	YES	0	692	1	0	0.0146	0.0146	KCNIP3->chr2:95963052-96051825:+,potassium_voltage-gated_channel_interacting_protein_3,PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1	KYSE410_OESOPHAGUS	0	1	0.0292	FALSE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	MCM3AP-AS1--LSS	1	1	MCM3AP-AS1	2311	chr21:47650441:+	LSS	22134	chr21:47639486:-	ONLY_REF_SPLICE	NO	6	12	0.25	0.14	0.0146	0.0146	LOCAL_INVERSION:+:-:[393],MCM3AP-AS1->MCM3AP_antisense_RNA_1,chr21:47649131-47679304:+,LSS->chr21:47608055-47648738:-,lanosterol_synthase_(2,3-oxidosqualene-lanosterol_cyclase)	KYSE410_OESOPHAGUS	0.14	0.25	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	NLK--PRIM2	1	1	NLK	2595	chr17:26370357:+	PRIM2	28287	chr6:57244699:+	ONLY_REF_SPLICE	NO	315	476	0.01	0	0.0146	0.0146	NLK->chr17:26368763-26523407:+,nemo_like_kinase,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	KYSE410_OESOPHAGUS	0	0.01	0.0292	FALSE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	PABPC1--PSMB1	1	1	PABPC1	8602	chr8:101721361:-	PSMB1	20898	chr6:170858201:-	ONLY_REF_SPLICE	NO	4305	917	0	0	0.0146	0.0146	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	KYSE410_OESOPHAGUS	0	0	0.0292	FALSE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	PLEKHA2--ADAM32	1	1	PLEKHA2	4056	chr8:38793568:+	ADAM32	40411	chr8:39079129:+	ONLY_REF_SPLICE	YES	77	7	0.03	0.22	0.0146	0.0146	PLEKHA2->Oncogene{Bushman},chr8:38758753-38831428:+,pleckstrin_homology_domain_containing_A2,ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+	KYSE410_OESOPHAGUS	0.03	0.22	0.0292	TRUE	0	0	0	1	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	PTPN13--AFF1	1	1	PTPN13	9224	chr4:87614827:+	AFF1	56916	chr4:87894982:+	ONLY_REF_SPLICE	NO	19	10	0.1	0.17	0.0146	0.0146	GTEx&tcga_normals:1/3694=0.03%,PTPN13->Oncogene{Bushman},chr4:87515468-87736324:+,protein_tyrosine_phosphatase,_non-receptor_type_13,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	KYSE410_OESOPHAGUS	0.1	0.17	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000809
KYSE410_OESOPHAGUS	RP11-108K3.1--GLDN	1	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0146	0.0146	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	KYSE410_OESOPHAGUS	1	1	0.0292	FALSE	0	30	1	55	0	FALSE	ACH-000809
KYSE410_OESOPHAGUS	SLMAP--COQ4	1	1	SLMAP	4548	chr3:57817257:+	COQ4	39047	chr9:131085295:+	ONLY_REF_SPLICE	NO	65	42	0.03	0.05	0.0146	0.0146	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,COQ4->chr9:131084815-131096351:+,coenzyme_Q4	KYSE410_OESOPHAGUS	0.03	0.05	0.0292	TRUE	0	0	0	1	0	FALSE	ACH-000809
PATU8988T_PANCREAS	ANP32B--NCL	480	8	ANP32B	9252	chr9:100774754:+	NCL	18735	chr2:232326361:-	INCL_NON_REF_SPLICE	YES	977	4376	0.33	0.1	5.0227	0.0837	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	0.1	0.33	5.1064	TRUE	0	0	0	7	0	TRUE	ACH-000023
PATU8988T_PANCREAS	TIMM23B--LINC00843	90	50	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9418	0.5232	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PATU8988T_PANCREAS	1	1	1.465	TRUE	508	994	45	981	0	FALSE	ACH-000023
PATU8988T_PANCREAS	ANP32B--NCL	84	8	ANP32B	9252	chr9:100774754:+	NCL	18675	chr2:232326421:-	INCL_NON_REF_SPLICE	YES	977	4493	0.09	0.02	0.879	0.0837	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	0.02	0.09	0.9627	TRUE	0	0	0	7	0	FALSE	ACH-000023
PATU8988T_PANCREAS	ANP32B--NCL	78	0	ANP32B	8161	chr9:100773632:+	NCL	19608	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8162	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	1	1	0.8162	TRUE	0	0	0	7	0	TRUE	ACH-000023
PATU8988T_PANCREAS	TIMM23--RP11-464F9.1	55	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	555	7	0.1	0.9	0.5755	0.0837	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PATU8988T_PANCREAS	0.1	0.9	0.6592	TRUE	519	3926	326	965	0	FALSE	ACH-000023
PATU8988T_PANCREAS	ZNF654--HMGB2	45	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4709	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	PATU8988T_PANCREAS	1	1	0.4709	TRUE	0	0	0	518	0	FALSE	ACH-000023
PATU8988T_PANCREAS	ANP32B--NCL	39	0	ANP32B	6936	chr9:100767435:+	NCL	18813	chr2:232326283:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4081	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	1	1	0.4081	TRUE	0	0	0	2	0	TRUE	ACH-000023
PATU8988T_PANCREAS	RP11-680G10.1--GSE1	34	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	22	1	0.67	0.3558	0.1046	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PATU8988T_PANCREAS	0.67	1	0.4604	TRUE	465	1949	224	605	0	FALSE	ACH-000023
PATU8988T_PANCREAS	RP11-680G10.1--GSE1	32	17	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	8	1	0.86	0.3348	0.1779	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PATU8988T_PANCREAS	0.86	1	0.5127	TRUE	458	1351	185	561	0	FALSE	ACH-000023
PATU8988T_PANCREAS	MT-TA--MT-TC	34	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3558	0.0523	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PATU8988T_PANCREAS	1	1	0.4081	FALSE	462	80	0	856	0	FALSE	ACH-000023
PATU8988T_PANCREAS	AL589743.1--RP11-536C10.17	32	5	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	14	0	0.73	1	0.3348	0.0523	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	PATU8988T_PANCREAS	0.73	1	0.3871	TRUE	0	33	0	45	33	FALSE	ACH-000023
PATU8988T_PANCREAS	AP000525.9--LA16c-60G3.6	32	5	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.3348	0.0523	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	PATU8988T_PANCREAS	0.88	1	0.3871	TRUE	0	42	0	133	42	FALSE	ACH-000023
PATU8988T_PANCREAS	RP11-123O10.4--GRIP1	22	12	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2302	0.1256	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PATU8988T_PANCREAS	1	1	0.3558	FALSE	416	2512	207	587	0	FALSE	ACH-000023
PATU8988T_PANCREAS	SMARCA4--C19orf44	17	21	SMARCA4	37709	chr19:11152236:+	C19orf44	53380	chr19:16620310:+	ONLY_REF_SPLICE	YES	10	10	0.79	0.79	0.1779	0.2197	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44	PATU8988T_PANCREAS	0.79	0.79	0.3976	TRUE	0	0	0	2	0	TRUE	ACH-000023
PATU8988T_PANCREAS	HSP90AB1--MT-RNR2	21	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	5991	0	0	1	0.2197	0.0105	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PATU8988T_PANCREAS	0	1	0.2302	FALSE	13	9	0	364	0	FALSE	ACH-000023
PATU8988T_PANCREAS	NPM1P24--SET	21	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	83	3457	0.21	0.01	0.2197	0.0105	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PATU8988T_PANCREAS	0.01	0.21	0.2302	TRUE	0	0	0	434	0	FALSE	ACH-000023
PATU8988T_PANCREAS	ANP32B--NCL	15	5	ANP32B	8188	chr9:100773659:+	NCL	18698	chr2:232326398:-	INCL_NON_REF_SPLICE	YES	1515	4605	0.01	0	0.157	0.0523	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	0	0.01	0.2093	TRUE	0	0	0	7	0	FALSE	ACH-000023
PATU8988T_PANCREAS	CDK1--EBF1	11	16	CDK1	2400	chr10:62539960:+	EBF1	26953	chr5:158158165:-	ONLY_REF_SPLICE	YES	1300	0	0.02	1	0.1151	0.1674	CDK1->Oncogene{Bushman},chr10:62538089-62554610:+,cyclin-dependent_kinase_1,EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1	PATU8988T_PANCREAS	0.02	1	0.2825	TRUE	0	0	0	1	0	FALSE	ACH-000023
PATU8988T_PANCREAS	ANP32B--NCL	12	6	ANP32B	9252	chr9:100774754:+	NCL	19531	chr2:232325565:-	INCL_NON_REF_SPLICE	YES	977	5199	0.02	0	0.1256	0.0628	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	0	0.02	0.1884	TRUE	0	0	0	7	0	FALSE	ACH-000023
PATU8988T_PANCREAS	ANP32B--NCL	10	4	ANP32B	8161	chr9:100773632:+	NCL	18716	chr2:232326380:-	INCL_NON_REF_SPLICE	YES	1620	4558	0.01	0	0.1046	0.0419	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	0	0.01	0.1465	TRUE	0	0	0	7	0	FALSE	ACH-000023
PATU8988T_PANCREAS	SMARCA4--C19orf44	8	7	SMARCA4	37709	chr19:11152236:+	C19orf44	54870	chr19:16623825:+	ONLY_REF_SPLICE	YES	10	10	0.6	0.6	0.0837	0.0732	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44	PATU8988T_PANCREAS	0.6	0.6	0.1569	TRUE	0	0	0	2	0	TRUE	ACH-000023
PATU8988T_PANCREAS	ANP32B--NCL	8	3	ANP32B	8160	chr9:100773631:+	NCL	18784	chr2:232326312:-	INCL_NON_REF_SPLICE	NO	1620	4250	0.01	0	0.0837	0.0314	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	0	0.01	0.1151	FALSE	0	0	0	7	0	FALSE	ACH-000023
PATU8988T_PANCREAS	HSP90AB1--MT-RNR2	8	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	6035	0	0	1	0.0837	0.0209	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PATU8988T_PANCREAS	0	1	0.1046	FALSE	13	9	0	364	0	FALSE	ACH-000023
PATU8988T_PANCREAS	ATAD2--NCL	8	1	ATAD2	8991	chr8:124382141:-	NCL	39734	chr2:232326312:-	INCL_NON_REF_SPLICE	NO	773	4252	0.01	0	0.0837	0.0105	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Artery_-_Tibial=1},ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	0	0.01	0.0942	FALSE	0	0	0	2	0	FALSE	ACH-000023
PATU8988T_PANCREAS	ANP32B--NCL	7	3	ANP32B	8161	chr9:100773632:+	NCL	18803	chr2:232326293:-	INCL_NON_REF_SPLICE	YES	1620	4264	0.01	0	0.0732	0.0314	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	0	0.01	0.1046	TRUE	0	0	0	7	0	FALSE	ACH-000023
PATU8988T_PANCREAS	MT-TA--MT-TC	6	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0628	0.0523	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PATU8988T_PANCREAS	1	1	0.1151	FALSE	462	80	0	856	0	FALSE	ACH-000023
PATU8988T_PANCREAS	AP000525.9--LA16c-60G3.6	7	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0732	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	PATU8988T_PANCREAS	1	1	0.0732	TRUE	0	5	0	18	5	TRUE	ACH-000023
PATU8988T_PANCREAS	EEF2--MT2A	4	12	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	2020	8	0.01	0.67	0.0419	0.1256	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	PATU8988T_PANCREAS	0.01	0.67	0.1675	TRUE	1	0	0	19	0	FALSE	ACH-000023
PATU8988T_PANCREAS	CDC27--FBXO16	6	2	CDC27	1277	chr17:45266512:-	FBXO16	33998	chr8:28314447:-	ONLY_REF_SPLICE	YES	264	17	0.03	0.32	0.0628	0.0209	CDC27->Oncogene{Bushman},cell_division_cycle_27,chr17:45195069-45266788:-,FBXO16->F-box_protein_16,chr8:28205804-28347835:-	PATU8988T_PANCREAS	0.03	0.32	0.0837	TRUE	0	0	0	1	0	FALSE	ACH-000023
PATU8988T_PANCREAS	DNAH14--SMYD3	6	2	DNAH14	3523	chr1:225117537:+	SMYD3	129332	chr1:246093239:-	ONLY_REF_SPLICE	YES	147	84	0.05	0.09	0.0628	0.0209	DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	PATU8988T_PANCREAS	0.05	0.09	0.0837	TRUE	0	0	0	1	0	FALSE	ACH-000023
PATU8988T_PANCREAS	MT-ND5--MT-ND6	6	2	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	2605	1	0	0.0628	0.0209	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	PATU8988T_PANCREAS	0	1	0.0837	FALSE	26	124	4	93	0	FALSE	ACH-000023
PATU8988T_PANCREAS	RP11-96H19.1--RP11-446N19.1	5	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	2	0.85	0.85	0.0523	0.0628	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PATU8988T_PANCREAS	0.85	0.85	0.1151	FALSE	515	4851	409	746	0	FALSE	ACH-000023
PATU8988T_PANCREAS	AKT3--DNAH14	3	10	AKT3	25845	chr1:243708812:-	DNAH14	64778	chr1:225270251:+	ONLY_REF_SPLICE	YES	137	7	0.09	0.65	0.0314	0.1046	AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14	PATU8988T_PANCREAS	0.09	0.65	0.136	TRUE	0	0	0	1	0	TRUE	ACH-000023
PATU8988T_PANCREAS	ANP32B--NCL	5	2	ANP32B	8117	chr9:100773588:+	NCL	18663	chr2:232326433:-	INCL_NON_REF_SPLICE	NO	1717	4603	0	0	0.0523	0.0209	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	0	0	0.0732	FALSE	0	0	0	7	0	FALSE	ACH-000023
PATU8988T_PANCREAS	RP11-96H19.1--RP11-446N19.1	4	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.83	0.0419	0.0628	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PATU8988T_PANCREAS	0.83	1	0.1047	FALSE	467	2173	244	435	0	FALSE	ACH-000023
PATU8988T_PANCREAS	AKT3--DNAH14	2	13	AKT3	25845	chr1:243708812:-	DNAH14	62236	chr1:225266909:+	ONLY_REF_SPLICE	YES	137	5	0.1	0.75	0.0209	0.136	AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14	PATU8988T_PANCREAS	0.1	0.75	0.1569	TRUE	0	0	0	1	0	TRUE	ACH-000023
PATU8988T_PANCREAS	RP11-120D5.1--MID1	4	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	38	0.6	0.19	0.0419	0.0523	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PATU8988T_PANCREAS	0.19	0.6	0.0942	FALSE	16	356	14	466	0	FALSE	ACH-000023
PATU8988T_PANCREAS	RP11-96H19.1--RP11-446N19.1	3	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.0314	0.0942	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PATU8988T_PANCREAS	0.86	1	0.1256	FALSE	407	2205	196	549	0	FALSE	ACH-000023
PATU8988T_PANCREAS	EEF2--RPS28	5	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0523	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	PATU8988T_PANCREAS	1	1	0.0523	TRUE	0	0	0	100	0	FALSE	ACH-000023
PATU8988T_PANCREAS	NPM1P24--SET	4	4	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	84	3163	0.09	0	0.0419	0.0419	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PATU8988T_PANCREAS	0	0.09	0.0838	FALSE	0	0	0	434	0	FALSE	ACH-000023
PATU8988T_PANCREAS	NPM1P24--SET	4	4	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	84	3197	0.09	0	0.0419	0.0419	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PATU8988T_PANCREAS	0	0.09	0.0838	FALSE	0	0	0	434	0	FALSE	ACH-000023
PATU8988T_PANCREAS	RP11-96H19.1--RP11-446N19.1	2	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	2	0	0.86	1	0.0209	0.1046	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PATU8988T_PANCREAS	0.86	1	0.1255	FALSE	275	511	55	178	0	FALSE	ACH-000023
PATU8988T_PANCREAS	ATAD2--NCL	4	1	ATAD2	8992	chr8:124382140:-	NCL	39750	chr2:232326296:-	INCL_NON_REF_SPLICE	NO	831	4215	0.01	0	0.0419	0.0105	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Artery_-_Tibial=1},ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	0	0.01	0.0524	FALSE	0	0	0	2	0	FALSE	ACH-000023
PATU8988T_PANCREAS	NPM1P24--SET	4	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	83	2851	0.06	0	0.0419	0.0105	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PATU8988T_PANCREAS	0	0.06	0.0524	FALSE	0	0	0	434	0	FALSE	ACH-000023
PATU8988T_PANCREAS	ANP32B--NCL	4	0	ANP32B	6911	chr9:100767410:+	NCL	18704	chr2:232326392:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	1	1	0.0419	TRUE	0	0	0	2	0	TRUE	ACH-000023
PATU8988T_PANCREAS	CMTM8--CMTM7	4	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0419	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	PATU8988T_PANCREAS	1	1	0.0419	FALSE	118	557	29	88	0	FALSE	ACH-000023
PATU8988T_PANCREAS	NPM1P24--SET	3	4	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	NO	84	3143	0.08	0	0.0314	0.0419	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PATU8988T_PANCREAS	0	0.08	0.0733	FALSE	0	0	0	434	0	FALSE	ACH-000023
PATU8988T_PANCREAS	SETD8--CDK2AP1	4	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0419	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	PATU8988T_PANCREAS	1	1	0.0419	TRUE	0	0	0	18	0	TRUE	ACH-000023
PATU8988T_PANCREAS	RPTOR--CHMP6	3	3	RPTOR	11459	chr17:78727985:+	CHMP6	49907	chr17:78968381:+	ONLY_REF_SPLICE	YES	19	49	0.24	0.11	0.0314	0.0314	NEIGHBORS[25227],RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1,CHMP6->charged_multivesicular_body_protein_6,chr17:78965398-78983317:+	PATU8988T_PANCREAS	0.11	0.24	0.0628	FALSE	0	0	0	1	0	FALSE	ACH-000023
PATU8988T_PANCREAS	ANP32B--NCL	3	2	ANP32B	8117	chr9:100773588:+	NCL	18735	chr2:232326361:-	INCL_NON_REF_SPLICE	YES	1717	4376	0	0	0.0314	0.0209	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	0	0	0.0523	FALSE	0	0	0	7	0	FALSE	ACH-000023
PATU8988T_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0105	0.1046	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PATU8988T_PANCREAS	1	1	0.1151	FALSE	192	492	57	212	0	FALSE	ACH-000023
PATU8988T_PANCREAS	ATAD2--NCL	3	1	ATAD2	8992	chr8:124382140:-	NCL	39759	chr2:232326287:-	INCL_NON_REF_SPLICE	NO	831	4449	0	0	0.0314	0.0105	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Artery_-_Tibial=1},ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	0	0	0.0419	FALSE	0	0	0	2	0	FALSE	ACH-000023
PATU8988T_PANCREAS	ATAD2--NCL	3	1	ATAD2	8992	chr8:124382140:-	NCL	39654	chr2:232326392:-	INCL_NON_REF_SPLICE	NO	831	4516	0	0	0.0314	0.0105	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Artery_-_Tibial=1},ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	0	0	0.0419	FALSE	0	0	0	2	0	FALSE	ACH-000023
PATU8988T_PANCREAS	ATAD2--NCL	3	1	ATAD2	8992	chr8:124382140:-	NCL	39744	chr2:232326302:-	INCL_NON_REF_SPLICE	NO	831	4288	0	0	0.0314	0.0105	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Artery_-_Tibial=1},ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-,NCL->chr2:232318242-232348352:-,nucleolin	PATU8988T_PANCREAS	0	0	0.0419	FALSE	0	0	0	2	0	FALSE	ACH-000023
PATU8988T_PANCREAS	NPM1P24--SET	3	1	NPM1P24	1524	chr10:74677769:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	NO	83	3457	0.05	0	0.0314	0.0105	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PATU8988T_PANCREAS	0	0.05	0.0419	FALSE	0	0	0	434	0	FALSE	ACH-000023
PATU8988T_PANCREAS	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PATU8988T_PANCREAS	1	1	0.0314	FALSE	462	80	0	856	0	FALSE	ACH-000023
PATU8988T_PANCREAS	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PATU8988T_PANCREAS	1	1	0.0314	FALSE	292	1546	117	613	0	FALSE	ACH-000023
PATU8988T_PANCREAS	RP11-123O10.4--GRIP1	1	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0105	0.0837	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PATU8988T_PANCREAS	1	1	0.0942	FALSE	93	270	15	244	0	FALSE	ACH-000023
PATU8988T_PANCREAS	MB21D2--FGF12	2	3	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	45	0	0.1	1	0.0209	0.0314	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	PATU8988T_PANCREAS	0.1	1	0.0523	FALSE	0	17	0	46	0	FALSE	ACH-000023
PATU8988T_PANCREAS	DNAH14--SMYD3	2	2	DNAH14	11993	chr1:225155216:+	SMYD3	129332	chr1:246093239:-	ONLY_REF_SPLICE	YES	91	84	0.04	0.05	0.0209	0.0209	DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	PATU8988T_PANCREAS	0.04	0.05	0.0418	TRUE	0	0	0	1	0	FALSE	ACH-000023
PATU8988T_PANCREAS	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	21	0	0.16	1	0.0209	0.0209	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PATU8988T_PANCREAS	0.16	1	0.0418	FALSE	164	806	69	479	0	FALSE	ACH-000023
PATU8988T_PANCREAS	TAOK1--RP5-1028K7.2	2	2	TAOK1	1561	chr17:27718042:+	RP5-1028K7.2	40560	chr17:38676967:+	ONLY_REF_SPLICE	NO	15	0	0.21	1	0.0209	0.0209	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,RP5-1028K7.2->chr17:38673278-38683254:+	PATU8988T_PANCREAS	0.21	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000023
PATU8988T_PANCREAS	DNAH14--SMYD3	1	4	DNAH14	12062	chr1:225155285:+	SMYD3	129332	chr1:246093239:-	ONLY_REF_SPLICE	YES	76	84	0.06	0.06	0.0105	0.0419	DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	PATU8988T_PANCREAS	0.06	0.06	0.0524	TRUE	0	0	0	1	0	FALSE	ACH-000023
PATU8988T_PANCREAS	DNAH14--SMYD3	1	4	DNAH14	15371	chr1:225161855:+	SMYD3	129332	chr1:246093239:-	ONLY_REF_SPLICE	YES	7	84	0.42	0.06	0.0105	0.0419	DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	PATU8988T_PANCREAS	0.06	0.42	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000023
PATU8988T_PANCREAS	EFCAB11--RP11-944C7.1	2	0	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	PATU8988T_PANCREAS	1	1	0.0209	TRUE	31	91	1	18	0	FALSE	ACH-000023
PATU8988T_PANCREAS	FAM114A2--LARP1	2	0	FAM114A2	1080	chr5:153418417:-	LARP1	27661	chr5:154169885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	FAM114A2->chr5:153369688-153418496:-,family_with_sequence_similarity_114_member_A2,LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+	PATU8988T_PANCREAS	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000023
PATU8988T_PANCREAS	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PATU8988T_PANCREAS	1	1	0.0209	FALSE	125	705	46	456	0	FALSE	ACH-000023
PATU8988T_PANCREAS	RNF139--ZFAT	2	0	RNF139	1553	chr8:125487531:+	ZFAT	30631	chr8:135545215:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	RNF139->Oncogene{Bushman},chr8:125486979-125500155:+,ring_finger_protein_139,ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing	PATU8988T_PANCREAS	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000023
PATU8988T_PANCREAS	TIMM23B--LINC00843	1	4	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0105	0.0419	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PATU8988T_PANCREAS	1	1	0.0524	TRUE	62	24	1	171	0	FALSE	ACH-000023
PATU8988T_PANCREAS	RP11-120D5.1--MID1	1	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	8	38	0.33	0.1	0.0105	0.0314	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PATU8988T_PANCREAS	0.1	0.33	0.0419	FALSE	0	48	1	163	0	FALSE	ACH-000023
PATU8988T_PANCREAS	SMARCA4--C19orf44	1	2	SMARCA4	37709	chr19:11152236:+	C19orf44	55966	chr19:16625308:+	ONLY_REF_SPLICE	NO	10	15	0.23	0.17	0.0105	0.0209	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44	PATU8988T_PANCREAS	0.17	0.23	0.0314	TRUE	0	0	0	2	0	TRUE	ACH-000023
PATU8988T_PANCREAS	ARHGEF28--BTF3	1	1	ARHGEF28	10154	chr5:73090279:+	BTF3	56982	chr5:72798313:+	ONLY_REF_SPLICE	NO	124	5062	0.02	0	0.0105	0.0105	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},ARHGEF28->Rho_guanine_nucleotide_exchange_factor_28,chr5:72921983-73237818:+,BTF3->basic_transcription_factor_3,chr5:72794233-72801460:+	PATU8988T_PANCREAS	0	0.02	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000023
PATU8988T_PANCREAS	DDB1--PRPF8	1	1	DDB1	22718	chr11:61076455:-	PRPF8	51892	chr17:1557310:-	ONLY_REF_SPLICE	YES	937	593	0	0	0.0105	0.0105	DDB1->chr11:61066923-61110068:-,damage_specific_DNA_binding_protein_1,PRPF8->chr17:1553923-1588176:-,pre-mRNA_processing_factor_8	PATU8988T_PANCREAS	0	0	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000023
PATU8988T_PANCREAS	FBXO28--DSTYK	1	1	FBXO28	1310	chr1:224302098:+	DSTYK	15374	chr1:205156934:-	ONLY_REF_SPLICE	YES	145	20	0.01	0.09	0.0105	0.0105	FBXO28->F-box_protein_28,chr1:224301789-224349749:+,DSTYK->chr1:205111632-205180727:-,dual_serine/threonine_and_tyrosine_protein_kinase	PATU8988T_PANCREAS	0.01	0.09	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000023
PATU8988T_PANCREAS	PAWR--RP1-78O14.1	1	1	PAWR	15902	chr12:79986391:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	189	0	0.01	1	0.0105	0.0105	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	PATU8988T_PANCREAS	0.01	1	0.021	FALSE	3	4	0	12	0	FALSE	ACH-000023
PATU8988T_PANCREAS	PHF3--PTP4A1	1	1	PHF3	3273	chr6:64356700:+	PTP4A1	35093	chr6:64286341:+	ONLY_REF_SPLICE	YES	163	413	0.01	0	0.0105	0.0105	LOCAL_REARRANGEMENT:+:[52233],PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+,PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1	PATU8988T_PANCREAS	0	0.01	0.021	FALSE	0	0	0	4	0	FALSE	ACH-000023
PATU8988T_PANCREAS	SMARCA4--C19orf44	1	1	SMARCA4	37709	chr19:11152236:+	C19orf44	57133	chr19:16628041:+	ONLY_REF_SPLICE	YES	10	31	0.17	0.06	0.0105	0.0105	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44	PATU8988T_PANCREAS	0.06	0.17	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000023
PATU8988T_PANCREAS	SPRTN--C1orf131	1	1	SPRTN	3765	chr1:231475614:+	C1orf131	21282	chr1:231361269:-	ONLY_REF_SPLICE	YES	119	91	0.02	0.02	0.0105	0.0105	LOCAL_INVERSION:+:-:[95917],SPRTN->SprT-like_N-terminal_domain,chr1:231472850-231490769:+,C1orf131->chr1:231359509-231376933:-,chromosome_1_open_reading_frame_131	PATU8988T_PANCREAS	0.02	0.02	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000023
PATU8988T_PANCREAS	URI1--UQCRFS1	1	1	URI1	19282	chr19:30503438:+	UQCRFS1	26812	chr19:29699065:-	ONLY_REF_SPLICE	YES	344	287	0.01	0.01	0.0105	0.0105	URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+,UQCRFS1->chr19:29698173-29704448:-,ubiquinol-cytochrome_c_reductase,_Rieske_iron-sulfur_polypeptide_1	PATU8988T_PANCREAS	0.01	0.01	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000023
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNK1--TMEM256	847	499	TNK1	6091	chr17:7290470:+	TMEM256	11714	chr17:7307457:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	13.8754	8.1745	NUCLCLUST,LOCAL_INVERSION:+:-:[13201],TNK1->chr17:7283853-7293093:+,tyrosine_kinase_non_receptor_1,TMEM256->chr17:7306294-7307456:-,transmembrane_protein_256	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	22.0499	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SERBP1--IL12RB2	132	98	SERBP1	5066	chr1:67889883:-	IL12RB2	34295	chr1:67855712:+	ONLY_REF_SPLICE	YES	666	0	0.26	1	2.1624	1.6054	LOCAL_INVERSION:-:+:[10910],SERBP1->SERPINE1_mRNA_binding_protein_1,chr1:67873493-67896098:-,IL12RB2->chr1:67773047-67862583:+,interleukin_12_receptor_subunit_beta_2	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	3.7678	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRD7--ATF6	86	26	BRD7	16369	chr16:50354159:-	ATF6	41782	chr1:161832988:+	ONLY_REF_SPLICE	YES	141	62	0.44	0.64	1.4088	0.4259	BRD7->bromodomain_containing_7,chr16:50347398-50402845:-,ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.64	1.8347	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	80	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.3105	0.3113	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.6218	TRUE	508	994	45	981	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SERBP1--IL12RB2	63	52	SERBP1	5066	chr1:67889883:-	IL12RB2	35395	chr1:67861230:+	ONLY_REF_SPLICE	YES	666	8	0.15	0.93	1.0321	0.8519	LOCAL_INVERSION:-:+:[10910],SERBP1->SERPINE1_mRNA_binding_protein_1,chr1:67873493-67896098:-,IL12RB2->chr1:67773047-67862583:+,interleukin_12_receptor_subunit_beta_2	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.93	1.884	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	59	26	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.9665	0.4259	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.3924	TRUE	477	1352	189	275	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	64	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0484	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0484	TRUE	0	0	0	518	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	47	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	97	4	0.34	0.93	0.7699	0.0655	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.93	0.8354	TRUE	519	3926	326	965	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	37	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6061	0.0491	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6552	FALSE	462	80	0	856	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNK1--TMEM256	2	125	TNK1	5595	chr17:7289974:+	TMEM256	12163	chr17:7307008:-	ONLY_REF_SPLICE	YES	168	11	0.43	0.92	0.0328	2.0477	NUCLCLUST,LOCAL_INVERSION:+:-:[13201],TNK1->chr17:7283853-7293093:+,tyrosine_kinase_non_receptor_1,TMEM256->chr17:7306294-7307456:-,transmembrane_protein_256	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.92	2.0805	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	28	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.4587	0.0328	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.4915	FALSE	499	1288	110	792	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLASP2--FBXL2	25	7	CLASP2	30398	chr3:33626242:-	FBXL2	82870	chr3:33426993:+	ONLY_REF_SPLICE	YES	32	2	0.5	0.94	0.4095	0.1147	LOCAL_INVERSION:-:+:[92583],CLASP2->chr3:33537737-33759848:-,cytoplasmic_linker_associated_protein_2,FBXL2->F-box_and_leucine-rich_repeat_protein_2,chr3:33318517-33445154:+	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.94	0.5242	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EXOC5--AP005135.2	19	9	EXOC5	13962	chr14:57696452:-	AP005135.2	30089	chr11:134931841:-	ONLY_REF_SPLICE	YES	79	0	0.26	1	0.3113	0.1474	EXOC5->chr14:57670518-57735726:-,exocyst_complex_component_5,AP005135.2->chr11:134931675-134945793:-	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.4587	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	11	30	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1802	0.4915	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6717	TRUE	160	277	29	98	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HCG27--LINC00574	17	1	HCG27	1441	chr6:31165977:+	LINC00574	10024	chr6:170195280:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2785	0.0164	HGNC_GENEFAM,HCG27->HLA_complex_group_27_(non-protein_coding),chr6:31165537-31171745:+,LINC00574->chr6:170190417-170202969:+,long_intergenic_non-protein_coding_RNA_574	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2949	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf61-PLSCR3--SHBG	14	9	C17orf61-PLSCR3	6250	chr17:7293953:-	SHBG	12663	chr17:7533734:+	ONLY_REF_SPLICE	YES	44	2	0.34	0.92	0.2293	0.1474	C17orf61-PLSCR3->chr17:7293053-7307416:-,SHBG->Oncogene{Bushman},chr17:7517382-7536700:+,sex_hormone_binding_globulin	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.92	0.3767	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	14	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.2293	0.0491	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.2784	FALSE	499	1288	110	792	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF214--PAFAH1B2	12	8	RNF214	6809	chr11:117117664:+	PAFAH1B2	22768	chr11:117038137:+	ONLY_REF_SPLICE	YES	69	134	0.22	0.13	0.1966	0.1311	LOCAL_REARRANGEMENT:+:[55731],RNF214->chr11:117103341-117157161:+,ring_finger_protein_214,PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.22	0.3277	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1802	0.1147	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2949	FALSE	499	1288	110	792	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1638	0.1638	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.3276	FALSE	499	1288	110	792	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	6	20	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0983	0.3276	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4259	TRUE	274	363	69	150	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	9	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1474	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1474	TRUE	0	0	0	81	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	16	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0655	0.2621	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.3276	FALSE	499	1288	110	792	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	7	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	5470	1	0	0.89	0.1147	0.0164	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.89	0.1311	TRUE	0	0	0	100	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	6	5	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.92	0.0983	0.0819	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1802	TRUE	0	1	0	84	1	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0983	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0983	FALSE	462	80	0	856	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	4	3	AC104820.2	16783	chr2:182227645:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	2	299	0.78	0.02	0.0655	0.0491	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.78	0.1146	FALSE	0	0	0	16	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	3	6	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.9	0.0491	0.0983	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.1474	TRUE	0	1	0	84	1	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0655	0.0328	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0983	FALSE	462	80	0	856	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	3	5	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.89	0.0491	0.0819	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.131	TRUE	0	1	0	84	1	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0655	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0655	TRUE	0	0	0	81	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	4	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0655	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0655	TRUE	0	5	1	24	1	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1014	chrM:14660:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0655	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0655	FALSE	499	1288	110	792	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0.0491	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0982	FALSE	462	80	0	856	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF214--PAFAH1B2	3	2	RNF214	6809	chr11:117117664:+	PAFAH1B2	29107	chr11:117046622:+	ONLY_REF_SPLICE	YES	69	3	0.07	0.62	0.0491	0.0328	LOCAL_REARRANGEMENT:+:[55731],RNF214->chr11:117103341-117157161:+,ring_finger_protein_214,PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.62	0.0819	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	1	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	82	1	0.05	0.8	0.0491	0.0164	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.8	0.0655	TRUE	0	0	0	81	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPLP2	3	0	EIF1	1072	chr17:39845208:+	RPLP2	8109	chr11:809971:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPLP2->chr11:809647-812880:+,ribosomal_protein_lateral_stalk_subunit_P2	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0491	TRUE	0	0	0	2	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0491	FALSE	499	1288	110	792	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	8	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	10	0	0.47	1	0.0164	0.1311	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.1475	TRUE	16	11	2	20	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLN1--MT-ND4L	3	0	TLN1	26985	chr9:35697576:-	MT-ND4L	30618	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0	TLN1->chr9:35696945-35732392:-,talin_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0491	FALSE	0	0	0	1	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	3	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0491	TRUE	0	0	0	518	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0328	0.0328	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0656	FALSE	515	4851	409	746	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERCC1--RTN2	2	1	ERCC1	3250	chr19:45952431:-	RTN2	24740	chr19:45992811:-	ONLY_REF_SPLICE	YES	4	36	0.43	0.08	0.0328	0.0164	LOCAL_REARRANGEMENT:-:[6461],ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1,RTN2->chr19:45988547-46000319:-,reticulon_2	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.43	0.0492	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL2RA--KHDRBS1	2	1	IL2RA	1238	chr10:6104051:-	KHDRBS1	24505	chr1:32510932:+	ONLY_REF_SPLICE	YES	808	3	0	0.5	0.0328	0.0164	IL2RA->Oncogene{Bushman},chr10:6052652-6104288:-,interleukin_2_receptor_subunit_alpha,KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.5	0.0492	FALSE	0	0	0	1	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPHLN1--TRERF1	2	0	PPHLN1	11329	chr12:42749024:+	TRERF1	36778	chr6:42237586:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0328	0	PPHLN1->chr12:42632249-42853517:+,periphilin_1,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0328	TRUE	0	0	0	1	0	TRUE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-319G9.5--WWOX	1	3	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	NO	0	24	1	0.14	0.0164	0.0491	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.0655	FALSE	154	425	28	76	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC35E4--OSBP2	1	2	SLC35E4	2418	chr22:31033056:+	OSBP2	14958	chr22:31090195:+	ONLY_REF_SPLICE	NO	59	0	0.05	1	0.0164	0.0328	NEIGHBORS[24766],SLC35E4->chr22:31031639-31065003:+,solute_carrier_family_35_member_E4,OSBP2->chr22:31089769-31303811:+,oxysterol_binding_protein_2	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0492	FALSE	0	1	0	3	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HOXB9--DAZAP1	1	1	HOXB9	1725	chr17:46703115:-	DAZAP1	11956	chr19:1417499:+	ONLY_REF_SPLICE	YES	402	211	0	0.01	0.0164	0.0164	HOXB9->chr17:46698518-46703839:-,homeobox_B9,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0328	FALSE	0	0	0	1	0	FALSE	ACH-000806
L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC35E4--OSBP2	1	1	SLC35E4	2418	chr22:31033056:+	OSBP2	26424	chr22:31266416:+	ONLY_REF_SPLICE	NO	59	31	0.03	0.06	0.0164	0.0164	NEIGHBORS[24766],SLC35E4->chr22:31031639-31065003:+,solute_carrier_family_35_member_E4,OSBP2->chr22:31089769-31303811:+,oxysterol_binding_protein_2	L540_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.06	0.0328	FALSE	0	2	0	3	0	FALSE	ACH-000806
CAOV4_OVARY	PRRC2C--RP11-16L9.4	408	117	PRRC2C	21766	chr1:171511368:+	RP11-16L9.4	47811	chr1:199010685:+	ONLY_REF_SPLICE	YES	112	0	0.82	1	3.8141	1.0938	PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C,RP11-16L9.4->chr1:198985262-199045864:+	CAOV4_OVARY	0.82	1	4.9079	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	KLK5--KLK6	356	0	KLK5	3986	chr19:51451896:-	KLK6	14361	chr19:51462572:-	ONLY_REF_SPLICE	YES	0	0	1	1	3.328	0	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[5538],KLK5->Oncogene{Bushman},chr19:51446559-51456349:-,kallikrein_related_peptidase_5,KLK6->Oncogene{Bushman},chr19:51461887-51472929:-,kallikrein_related_peptidase_6	CAOV4_OVARY	1	1	3.328	TRUE	0	0	0	2	0	TRUE	ACH-000103
CAOV4_OVARY	MRPS12--RYR1	264	110	MRPS12	1796	chr19:39421983:+	RYR1	63172	chr19:39017633:+	ONLY_REF_SPLICE	YES	325	0	0.54	1	2.468	1.0283	MRPS12->chr19:39421188-39423802:+,mitochondrial_ribosomal_protein_S12,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	CAOV4_OVARY	0.54	1	3.4963	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	RAB5C--GHDC	269	12	RAB5C	1125	chr17:40306911:-	GHDC	14189	chr17:40345868:-	ONLY_REF_SPLICE	YES	29	9	0.91	0.97	2.5147	0.1122	LOCAL_REARRANGEMENT:-:[33782],RAB5C->Oncogene{Bushman},RAB5C,_member_RAS_oncogene_family,chr17:40276994-40307035:-,GHDC->GH3_domain_containing,chr17:40340817-40346531:-	CAOV4_OVARY	0.91	0.97	2.6269	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TN	127	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1872	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAOV4_OVARY	1	1	1.1872	FALSE	369	2501	205	193	0	FALSE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TC	101	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9442	0.0935	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAOV4_OVARY	1	1	1.0377	FALSE	462	80	0	856	0	FALSE	ACH-000103
CAOV4_OVARY	TIMM23B--LINC00843	72	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6731	0.1776	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAOV4_OVARY	1	1	0.8507	TRUE	508	994	45	981	0	FALSE	ACH-000103
CAOV4_OVARY	RP11-123O10.4--GRIP1	71	17	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.99	0.6637	0.1589	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAOV4_OVARY	0.99	1	0.8226	FALSE	416	2512	207	587	0	FALSE	ACH-000103
CAOV4_OVARY	ZNF571--SPINT2	61	25	ZNF571	3950	chr19:38074872:-	SPINT2	17262	chr19:38774267:+	ONLY_REF_SPLICE	YES	9	3794	0.91	0.02	0.5702	0.2337	ZNF571->chr19:38045684-38085673:-,zinc_finger_protein_571,SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2	CAOV4_OVARY	0.02	0.91	0.8039	TRUE	0	0	0	1	0	FALSE	ACH-000103
CAOV4_OVARY	MT-ND6--MT-TE	65	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.6076	0.0374	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV4_OVARY	0.99	1	0.645	FALSE	499	1288	110	792	0	FALSE	ACH-000103
CAOV4_OVARY	WNK1--CNTN4	56	18	WNK1	6601	chr12:939326:+	CNTN4	67593	chr3:3030029:+	ONLY_REF_SPLICE	YES	111	0	0.4	1	0.5235	0.1683	WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,CNTN4->Oncogene{Bushman},chr3:2140497-3099645:+,contactin_4	CAOV4_OVARY	0.4	1	0.6918	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	CEP170--CASC11	49	39	CEP170	13025	chr1:243349081:-	CASC11	40556	chr8:128715488:-	ONLY_REF_SPLICE	YES	46	3	0.66	0.97	0.4581	0.3646	CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CAOV4_OVARY	0.66	0.97	0.8227	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	RP4-565E6.1--HYDIN	54	19	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	3	1	0.96	0.5048	0.1776	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	CAOV4_OVARY	0.96	1	0.6824	TRUE	456	1387	91	133	0	FALSE	ACH-000103
CAOV4_OVARY	RAB5C--GHDC	45	10	RAB5C	1125	chr17:40306911:-	GHDC	14445	chr17:40345612:-	ONLY_REF_SPLICE	YES	29	75	0.65	0.42	0.4207	0.0935	LOCAL_REARRANGEMENT:-:[33782],RAB5C->Oncogene{Bushman},RAB5C,_member_RAS_oncogene_family,chr17:40276994-40307035:-,GHDC->GH3_domain_containing,chr17:40340817-40346531:-	CAOV4_OVARY	0.42	0.65	0.5142	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	MT-ND3--MT-ATP8	47	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4394	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV4_OVARY	1	1	0.4394	FALSE	351	233	23	137	0	FALSE	ACH-000103
CAOV4_OVARY	RP11-321N4.5--MTO1	42	18	RP11-321N4.5	2343	chr6:86322550:-	MTO1	16687	chr6:74189455:+	ONLY_REF_SPLICE	YES	0	21	1	0.74	0.3926	0.1683	RP11-321N4.5->chr6:86267696-86324952:-,MTO1->chr6:74171301-74218959:+,mitochondrial_tRNA_translation_optimization_1	CAOV4_OVARY	0.74	1	0.5609	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	TIMM23--RP11-464F9.1	40	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	152	4	0.22	0.91	0.3739	0.0187	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAOV4_OVARY	0.22	0.91	0.3926	TRUE	519	3926	326	965	0	FALSE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TN	37	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3459	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAOV4_OVARY	1	1	0.3459	FALSE	369	2501	205	193	0	FALSE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TN	20	66	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.187	0.617	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAOV4_OVARY	1	1	0.804	FALSE	369	2501	205	193	0	FALSE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TN	28	17	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2618	0.1589	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAOV4_OVARY	1	1	0.4207	FALSE	369	2501	205	193	0	FALSE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TC	25	10	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2337	0.0935	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAOV4_OVARY	1	1	0.3272	FALSE	462	80	0	856	0	FALSE	ACH-000103
CAOV4_OVARY	KANK2--RGL3	23	12	KANK2	13554	chr19:11280553:-	RGL3	34336	chr19:11495320:-	ONLY_REF_SPLICE	YES	35	34	0.5	0.51	0.215	0.1122	KANK2->KN_motif_and_ankyrin_repeat_domains_2,chr19:11274943-11308467:-,RGL3->chr19:11495017-11530018:-,ral_guanine_nucleotide_dissociation_stimulator_like_3	CAOV4_OVARY	0.5	0.51	0.3272	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	MT-ND6--MT-TE	20	23	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.9	1	0.187	0.215	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV4_OVARY	0.9	1	0.402	FALSE	499	1288	110	792	0	FALSE	ACH-000103
CAOV4_OVARY	MRPS12--RYR1	3	81	MRPS12	1796	chr19:39421983:+	RYR1	63826	chr19:39018287:+	ONLY_REF_SPLICE	YES	325	1	0.21	0.99	0.028	0.7572	MRPS12->chr19:39421188-39423802:+,mitochondrial_ribosomal_protein_S12,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	CAOV4_OVARY	0.21	0.99	0.7852	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TN	15	32	MT-TA	1054	chrM:5602:-	MT-TN	4092	chrM:5707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1402	0.2991	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAOV4_OVARY	1	1	0.4393	FALSE	369	2501	205	193	0	FALSE	ACH-000103
CAOV4_OVARY	CEP170--CASC11	20	11	CEP170	12545	chr1:243349561:-	CASC11	40556	chr8:128715488:-	ONLY_REF_SPLICE	YES	151	3	0.17	0.91	0.187	0.1028	CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CAOV4_OVARY	0.17	0.91	0.2898	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	MT-ND6--MT-TE	21	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1963	0.028	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV4_OVARY	0.96	1	0.2243	FALSE	499	1288	110	792	0	FALSE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TN	8	54	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0748	0.5048	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAOV4_OVARY	1	1	0.5796	FALSE	369	2501	205	193	0	FALSE	ACH-000103
CAOV4_OVARY	BAGE2--CTBP2P1	18	9	BAGE2	5645	chr21:11058161:-	CTBP2P1	23085	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1683	0.0841	BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	CAOV4_OVARY	1	1	0.2524	TRUE	0	0	0	6	0	TRUE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TN	20	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.187	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAOV4_OVARY	1	1	0.187	FALSE	369	2501	205	193	0	FALSE	ACH-000103
CAOV4_OVARY	MT-ND6--MT-TE	10	32	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.89	1	0.0935	0.2991	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV4_OVARY	0.89	1	0.3926	FALSE	499	1288	110	792	0	FALSE	ACH-000103
CAOV4_OVARY	CEP170--CASC11	8	39	CEP170	13025	chr1:243349081:-	CASC11	39334	chr8:128728414:-	ONLY_REF_SPLICE	YES	46	0	0.51	1	0.0748	0.3646	CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CAOV4_OVARY	0.51	1	0.4394	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	MT-ND6--MT-TE	4	49	MT-ND6	1245	chrM:14429:-	MT-TE	4514	chrM:14754:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.0374	0.4581	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV4_OVARY	0.96	1	0.4955	FALSE	499	1288	110	792	0	FALSE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TC	12	16	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1122	0.1496	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAOV4_OVARY	1	1	0.2618	FALSE	462	80	0	856	0	FALSE	ACH-000103
CAOV4_OVARY	CEP170--CASC11	5	39	CEP170	13025	chr1:243349081:-	CASC11	39354	chr8:128728394:-	INCL_NON_REF_SPLICE	YES	46	0	0.49	1	0.0467	0.3646	CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CAOV4_OVARY	0.49	1	0.4113	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	CEP170--CASC11	5	39	CEP170	13025	chr1:243349081:-	CASC11	39330	chr8:128728418:-	INCL_NON_REF_SPLICE	YES	46	0	0.49	1	0.0467	0.3646	CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CAOV4_OVARY	0.49	1	0.4113	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	MT-ND3--MT-ATP8	14	0	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1309	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV4_OVARY	1	1	0.1309	FALSE	351	233	23	137	0	FALSE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TC	14	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1309	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAOV4_OVARY	1	1	0.1309	FALSE	462	80	0	856	0	FALSE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TN	3	40	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.3739	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAOV4_OVARY	1	1	0.4019	FALSE	369	2501	205	193	0	FALSE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TN	7	22	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0654	0.2057	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAOV4_OVARY	1	1	0.2711	FALSE	369	2501	205	193	0	FALSE	ACH-000103
CAOV4_OVARY	MT-ND6--MT-TE	4	32	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.0374	0.2991	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV4_OVARY	0.9	1	0.3365	FALSE	499	1288	110	792	0	FALSE	ACH-000103
CAOV4_OVARY	MT-ND6--MT-TE	7	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0654	0.1589	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV4_OVARY	0.96	1	0.2243	FALSE	499	1288	110	792	0	FALSE	ACH-000103
CAOV4_OVARY	MT-ND6--MT-TE	7	16	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0654	0.1496	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV4_OVARY	0.96	1	0.215	FALSE	499	1288	110	792	0	FALSE	ACH-000103
CAOV4_OVARY	MT-ND6--MT-TE	11	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1028	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV4_OVARY	1	1	0.1028	FALSE	499	1288	110	792	0	FALSE	ACH-000103
CAOV4_OVARY	PCAT1--PVT1	10	3	PCAT1	3907	chr8:128018863:+	PVT1	17836	chr8:128902835:+	ONLY_REF_SPLICE	YES	1	360	0.93	0.03	0.0935	0.028	PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	CAOV4_OVARY	0.03	0.93	0.1215	TRUE	0	0	0	1	0	FALSE	ACH-000103
CAOV4_OVARY	PRUNE--NBPF18P	10	2	PRUNE	2527	chr1:150990380:+	NBPF18P	14603	chr1:151971184:+	ONLY_REF_SPLICE	YES	105	0	0.1	1	0.0935	0.0187	PRUNE->chr1:150980896-151008189:+,prune_exopolyphosphatase,NBPF18P->chr1:151967007-152015250:+,neuroblastoma_breakpoint_family_member_18,_pseudogene	CAOV4_OVARY	0.1	1	0.1122	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TN	10	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0935	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAOV4_OVARY	1	1	0.0935	FALSE	369	2501	205	193	0	FALSE	ACH-000103
CAOV4_OVARY	MT-ND6--MT-TE	3	23	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.87	1	0.028	0.215	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV4_OVARY	0.87	1	0.243	FALSE	499	1288	110	792	0	FALSE	ACH-000103
CAOV4_OVARY	MT-ND6--MT-TE	3	23	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.028	0.215	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV4_OVARY	0.9	1	0.243	FALSE	499	1288	110	792	0	FALSE	ACH-000103
CAOV4_OVARY	FAM117B--BMPR2	8	2	FAM117B	1611	chr2:203500511:+	BMPR2	29244	chr2:203407034:+	ONLY_REF_SPLICE	YES	15	50	0.4	0.17	0.0748	0.0187	LOCAL_REARRANGEMENT:+:[67427],FAM117B->chr2:203499901-203634480:+,family_with_sequence_similarity_117_member_B,BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+	CAOV4_OVARY	0.17	0.4	0.0935	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	MT-ND6--MT-TE	8	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0748	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV4_OVARY	1	1	0.0748	FALSE	499	1288	110	792	0	FALSE	ACH-000103
CAOV4_OVARY	MT-ND6--MT-TE	3	20	MT-ND6	1084	chrM:14590:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.028	0.187	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV4_OVARY	0.96	1	0.215	FALSE	499	1288	110	792	0	FALSE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TN	8	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0748	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAOV4_OVARY	1	1	0.0748	FALSE	369	2501	205	193	0	FALSE	ACH-000103
CAOV4_OVARY	PGM2--C4orf19	6	7	PGM2	13574	chr4:37857362:+	C4orf19	22309	chr4:37590468:+	ONLY_REF_SPLICE	YES	62	13	0.17	0.5	0.0561	0.0654	PGM2->chr4:37828255-37864558:+,phosphoglucomutase_2,C4orf19->chr4:37455563-37625117:+,chromosome_4_open_reading_frame_19	CAOV4_OVARY	0.17	0.5	0.1215	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	KCNQ3--LRRC6	7	1	KCNQ3	1807	chr8:133492394:-	LRRC6	42225	chr8:133622507:-	ONLY_REF_SPLICE	YES	1	8	0.89	0.5	0.0654	0.0093	LOCAL_REARRANGEMENT:-:[91120],KCNQ3->chr8:133133108-133493200:-,potassium_voltage-gated_channel_subfamily_Q_member_3,LRRC6->chr8:133584320-133687838:-,leucine_rich_repeat_containing_6	CAOV4_OVARY	0.5	0.89	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TC	4	13	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0.1215	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAOV4_OVARY	1	1	0.1589	FALSE	462	80	0	856	0	FALSE	ACH-000103
CAOV4_OVARY	WNK1--CNTN4	6	5	WNK1	6601	chr12:939326:+	CNTN4	70359	chr3:3067786:+	ONLY_REF_SPLICE	YES	111	5	0.09	0.69	0.0561	0.0467	WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,CNTN4->Oncogene{Bushman},chr3:2140497-3099645:+,contactin_4	CAOV4_OVARY	0.09	0.69	0.1028	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	MT-ND3--MT-ATP8	7	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0654	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV4_OVARY	1	1	0.0654	FALSE	351	233	23	137	0	FALSE	ACH-000103
CAOV4_OVARY	MT-ND3--MT-ATP8	7	0	MT-ND3	1053	chrM:10111:+	MT-ATP8	4482	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0654	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV4_OVARY	1	1	0.0654	FALSE	351	233	23	137	0	FALSE	ACH-000103
CAOV4_OVARY	MT-ND6--MT-TE	7	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0654	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV4_OVARY	1	1	0.0654	FALSE	499	1288	110	792	0	FALSE	ACH-000103
CAOV4_OVARY	BBX--RP11-446H18.5	5	5	BBX	4463	chr3:107245245:+	RP11-446H18.5	45780	chr3:107101023:-	INCL_NON_REF_SPLICE	YES	22	0	0.31	1	0.0467	0.0467	BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,RP11-446H18.5->chr3:106991458-107101007:-	CAOV4_OVARY	0.31	1	0.0934	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	MT-ND6--MT-TE	6	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0561	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV4_OVARY	1	1	0.0561	FALSE	499	1288	110	792	0	FALSE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TN	6	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0561	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAOV4_OVARY	1	1	0.0561	FALSE	369	2501	205	193	0	FALSE	ACH-000103
CAOV4_OVARY	MT-ND3--MT-ATP8	5	0	MT-ND3	1048	chrM:10106:+	MT-ATP8	4405	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0467	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV4_OVARY	1	1	0.0467	FALSE	351	233	23	137	0	FALSE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TN	5	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0467	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAOV4_OVARY	1	1	0.0467	FALSE	369	2501	205	193	0	FALSE	ACH-000103
CAOV4_OVARY	PRRC2C--RP11-16L9.4	3	7	PRRC2C	21766	chr1:171511368:+	RP11-16L9.4	48928	chr1:199045653:+	ONLY_REF_SPLICE	YES	112	9	0.08	0.53	0.028	0.0654	PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C,RP11-16L9.4->chr1:198985262-199045864:+	CAOV4_OVARY	0.08	0.53	0.0934	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	C15orf57--CBX3	4	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	49	27	0.11	0.18	0.0374	0.0187	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CAOV4_OVARY	0.11	0.18	0.0561	TRUE	267	562	48	632	0	FALSE	ACH-000103
CAOV4_OVARY	RP11-123O10.4--GRIP1	3	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	2	1	0.82	0.028	0.0561	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAOV4_OVARY	0.82	1	0.0841	FALSE	93	270	15	244	0	FALSE	ACH-000103
CAOV4_OVARY	CEP170--CASC11	4	1	CEP170	9827	chr1:243362362:-	CASC11	40556	chr8:128715488:-	ONLY_REF_SPLICE	YES	135	3	0.04	0.62	0.0374	0.0093	CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CAOV4_OVARY	0.04	0.62	0.0467	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	KLK5--KLK6	4	1	KLK5	5130	chr19:51446899:-	KLK6	14505	chr19:51462428:-	INCL_NON_REF_SPLICE	YES	2012	3916	0	0	0.0374	0.0093	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[5538],KLK5->Oncogene{Bushman},chr19:51446559-51456349:-,kallikrein_related_peptidase_5,KLK6->Oncogene{Bushman},chr19:51461887-51472929:-,kallikrein_related_peptidase_6	CAOV4_OVARY	0	0	0.0467	FALSE	0	0	0	1	0	FALSE	ACH-000103
CAOV4_OVARY	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0.0093	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAOV4_OVARY	1	1	0.0467	FALSE	515	4851	409	746	0	FALSE	ACH-000103
CAOV4_OVARY	MT-ND3--MT-ATP8	4	0	MT-ND3	1241	chrM:10299:+	MT-ATP8	4419	chrM:8438:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV4_OVARY	1	1	0.0374	FALSE	351	233	23	137	0	FALSE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TN	4	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAOV4_OVARY	1	1	0.0374	FALSE	369	2501	205	193	0	FALSE	ACH-000103
CAOV4_OVARY	BBX--LINC00882	3	2	BBX	4463	chr3:107245245:+	LINC00882	46995	chr3:106848839:-	ONLY_REF_SPLICE	YES	22	2	0.19	0.71	0.028	0.0187	BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,LINC00882->chr3:106555658-106959488:-,long_intergenic_non-protein_coding_RNA_882	CAOV4_OVARY	0.19	0.71	0.0467	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	PCAT1--RP11-382A18.2	3	2	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.028	0.0187	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	CAOV4_OVARY	0.83	1	0.0467	TRUE	4	84	1	46	0	FALSE	ACH-000103
CAOV4_OVARY	TIMM23B--LINC00843	3	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	3	1	0.62	0.028	0.0187	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAOV4_OVARY	0.62	1	0.0467	TRUE	62	24	1	171	0	FALSE	ACH-000103
CAOV4_OVARY	C15orf57--CBX3	3	1	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	47	28	0.08	0.12	0.028	0.0093	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CAOV4_OVARY	0.08	0.12	0.0373	TRUE	267	562	48	632	0	FALSE	ACH-000103
CAOV4_OVARY	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0.0093	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAOV4_OVARY	1	1	0.0373	FALSE	467	2173	244	435	0	FALSE	ACH-000103
CAOV4_OVARY	MT-ND3--MT-ATP8	3	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4444	chrM:8463:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV4_OVARY	1	1	0.028	FALSE	351	233	23	137	0	FALSE	ACH-000103
CAOV4_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV4_OVARY	1	1	0.028	FALSE	499	1288	110	792	0	FALSE	ACH-000103
CAOV4_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1052	chrM:14622:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV4_OVARY	1	1	0.028	FALSE	499	1288	110	792	0	FALSE	ACH-000103
CAOV4_OVARY	MT-TA--MT-TN	3	0	MT-TA	1072	chrM:5584:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAOV4_OVARY	1	1	0.028	FALSE	369	2501	205	193	0	FALSE	ACH-000103
CAOV4_OVARY	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CAOV4_OVARY	1	1	0.028	TRUE	22	156	2	142	0	FALSE	ACH-000103
CAOV4_OVARY	PCAT1--PVT1	2	3	PCAT1	3907	chr8:128018863:+	PVT1	16671	chr8:128867401:+	ONLY_REF_SPLICE	YES	1	383	0.83	0.01	0.0187	0.028	PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	CAOV4_OVARY	0.01	0.83	0.0467	FALSE	0	0	0	1	0	FALSE	ACH-000103
CAOV4_OVARY	PRUNE--NBPF18P	2	2	PRUNE	3292	chr1:150991145:+	NBPF18P	14603	chr1:151971184:+	ONLY_REF_SPLICE	YES	101	0	0.04	1	0.0187	0.0187	PRUNE->chr1:150980896-151008189:+,prune_exopolyphosphatase,NBPF18P->chr1:151967007-152015250:+,neuroblastoma_breakpoint_family_member_18,_pseudogene	CAOV4_OVARY	0.04	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	RP4-565E6.1--HYDIN	1	6	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	16	1	0.3	0.0093	0.0561	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	CAOV4_OVARY	0.3	1	0.0654	TRUE	84	87	4	41	0	FALSE	ACH-000103
CAOV4_OVARY	BBX--RP11-446H18.5	2	1	BBX	4463	chr3:107245245:+	RP11-446H18.5	58464	chr3:106991607:-	ONLY_REF_SPLICE	YES	22	0	0.12	1	0.0187	0.0093	BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,RP11-446H18.5->chr3:106991458-107101007:-	CAOV4_OVARY	0.12	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	BMPR1B--PDLIM5	2	0	BMPR1B	1101	chr4:95679219:+	PDLIM5	46461	chr4:95539155:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_FI:{Muscle=[count:3=pct:1.3]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:+:[89742],BMPR1B->bone_morphogenetic_protein_receptor_type_1B,chr4:95679119-96079599:+,PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+	CAOV4_OVARY	1	1	0.0187	TRUE	0	1	0	2	1	TRUE	ACH-000103
CAOV4_OVARY	BMPR1B--PDLIM5	2	0	BMPR1B	1101	chr4:95679219:+	PDLIM5	39649	chr4:95506716:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_FI:{Muscle=[count:3=pct:1.3]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:+:[89742],BMPR1B->bone_morphogenetic_protein_receptor_type_1B,chr4:95679119-96079599:+,PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+	CAOV4_OVARY	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	CPSF6--C9orf3	2	0	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CAOV4_OVARY	1	1	0.0187	TRUE	53	99	2	44	0	FALSE	ACH-000103
CAOV4_OVARY	CPSF6--CHMP1A	2	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	CAOV4_OVARY	1	1	0.0187	TRUE	95	74	6	34	0	FALSE	ACH-000103
CAOV4_OVARY	EXOG--NEURL4	2	0	EXOG	5038	chr3:38541655:+	NEURL4	23245	chr17:7228299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	EXOG->chr3:38537618-38583652:+,endo/exonuclease_(5'-3'),_endonuclease_G-like,NEURL4->chr17:7218947-7232712:-,neuralized_E3_ubiquitin_protein_ligase_4	CAOV4_OVARY	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	PCAT1--PVT1	1	4	PCAT1	5528	chr8:128026019:+	PVT1	16671	chr8:128867401:+	ONLY_REF_SPLICE	YES	0	383	1	0.01	0.0093	0.0374	PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	CAOV4_OVARY	0.01	1	0.0467	FALSE	0	0	0	1	0	FALSE	ACH-000103
CAOV4_OVARY	PKP3--C1orf159	2	0	PKP3	10497	chr11:404323:+	C1orf159	17245	chr1:1041429:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	PKP3->chr11:392614-404908:+,plakophilin_3,C1orf159->chr1:1017198-1051741:-,chromosome_1_open_reading_frame_159	CAOV4_OVARY	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	PPP1R16B--RALGAPB	2	0	PPP1R16B	2439	chr20:37464818:+	RALGAPB	21631	chr20:37117046:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	PPP1R16B->Oncogene{Bushman},chr20:37434348-37551667:+,protein_phosphatase_1_regulatory_subunit_16B,RALGAPB->Ral_GTPase_activating_protein_non-catalytic_beta_subunit,chr20:37101459-37207504:+	CAOV4_OVARY	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	OBSCN--ARF1	1	3	OBSCN	24742	chr1:228462145:+	ARF1	104543	chr1:228284779:+	ONLY_REF_SPLICE	YES	16	21	0.2	0.16	0.0093	0.028	OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF,ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+	CAOV4_OVARY	0.16	0.2	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000103
CAOV4_OVARY	PDE4D--DEPDC1B	1	2	PDE4D	13468	chr5:59284315:-	DEPDC1B	63202	chr5:59943360:-	ONLY_REF_SPLICE	YES	6	218	0.33	0.01	0.0093	0.0187	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|LUSC:1|PRAD:2],LOCAL_REARRANGEMENT:-:[74792],PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-	CAOV4_OVARY	0.01	0.33	0.028	FALSE	0	0	0	2	0	FALSE	ACH-000103
CAOV4_OVARY	TPR--IVNS1ABP	1	2	TPR	38535	chr1:186292818:-	IVNS1ABP	56904	chr1:185274775:-	ONLY_REF_SPLICE	YES	1490	1635	0	0	0.0093	0.0187	TPR->Oncogene{Bushman},chr1:186280784-186344825:-,translocated_promoter_region,_nuclear_basket_protein,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	CAOV4_OVARY	0	0	0.028	FALSE	0	0	0	1	0	FALSE	ACH-000103
CAOV4_OVARY	MX1--PVRL3	1	1	MX1	16513	chr21:42813841:+	PVRL3	35369	chr3:110830877:+	ONLY_REF_SPLICE	YES	389	72	0.01	0.03	0.0093	0.0093	MX1->MX_dynamin_like_GTPase_1,chr21:42792231-42831141:+,PVRL3->chr3:110788918-110994410:+	CAOV4_OVARY	0.01	0.03	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000103
CAOV4_OVARY	PRKCH--HIF1A	1	1	PRKCH	27174	chr14:61952374:+	HIF1A	45882	chr14:62187100:+	ONLY_REF_SPLICE	YES	40	189	0.05	0.01	0.0093	0.0093	PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	CAOV4_OVARY	0.01	0.05	0.0186	FALSE	0	3	0	5	0	FALSE	ACH-000103
CAOV4_OVARY	PTTG1IP--COL18A1	1	1	PTTG1IP	1336	chr21:46293417:-	COL18A1	17186	chr21:46888156:+	ONLY_REF_SPLICE	YES	725	802	0	0	0.0093	0.0093	PTTG1IP->Oncogene{Bushman},chr21:46269500-46293752:-,pituitary_tumor-transforming_1_interacting_protein,COL18A1->chr21:46825052-46933634:+,collagen_type_XVIII_alpha_1	CAOV4_OVARY	0	0	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000103
CAOV4_OVARY	TPR--IVNS1ABP	1	1	TPR	30592	chr1:186304470:-	IVNS1ABP	56904	chr1:185274775:-	ONLY_REF_SPLICE	YES	1058	1635	0	0	0.0093	0.0093	TPR->Oncogene{Bushman},chr1:186280784-186344825:-,translocated_promoter_region,_nuclear_basket_protein,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	CAOV4_OVARY	0	0	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000103
SKNAS_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	189	35	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.7989	0.3331	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKNAS_AUTONOMIC_GANGLIA	1	1	2.132	TRUE	508	994	45	981	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	KANSL1--ARL17B	108	42	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	60	39	0.71	0.79	1.0279	0.3997	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SKNAS_AUTONOMIC_GANGLIA	0.71	0.79	1.4276	TRUE	181	1564	124	196	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	101	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	359	8	0.23	0.93	0.9613	0.0381	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKNAS_AUTONOMIC_GANGLIA	0.23	0.93	0.9994	TRUE	519	3926	326	965	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	ZNF654--HMGB2	39	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3712	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKNAS_AUTONOMIC_GANGLIA	1	1	0.3712	TRUE	0	0	0	518	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	OR51S1--TP53I11	38	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3617	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SKNAS_AUTONOMIC_GANGLIA	1	1	0.3617	TRUE	402	216	10	229	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND5--MT-ATP8	28	4	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2838	4	0.01	0.89	0.2665	0.0381	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0.01	0.89	0.3046	FALSE	43	37	8	105	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO2	27	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	70	4	0.3	0.88	0.257	0.0286	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKNAS_AUTONOMIC_GANGLIA	0.3	0.88	0.2856	FALSE	59	21	0	114	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND5--MT-ATP8	24	12	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.2284	0.1142	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0.9	1	0.3426	FALSE	43	37	8	105	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	25	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	3	1	0.91	0.2379	0.0571	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKNAS_AUTONOMIC_GANGLIA	0.91	1	0.295	TRUE	477	1352	189	275	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	24	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15230	4	0	0.87	0.2284	0.019	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	0.87	0.2474	FALSE	231	205	14	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND5--MT-ATP8	18	3	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5928	59	0	0.26	0.1713	0.0286	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	0.26	0.1999	FALSE	43	37	8	105	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	ABCB7--ZDHHC15	16	8	ABCB7	2709	chrX:74334589:-	ZDHHC15	33033	chrX:74599033:-	ONLY_REF_SPLICE	YES	32	7	0.43	0.77	0.1523	0.0761	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Brain_-_Caudate_(basal_ganglia)=1},ABCB7->ATP_binding_cassette_subfamily_B_member_7,chrX:74273115-74376567:-,ZDHHC15->chrX:74588262-74743337:-,zinc_finger_DHHC-type_containing_15	SKNAS_AUTONOMIC_GANGLIA	0.43	0.77	0.2284	TRUE	0	0	0	1	0	TRUE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	NPM1P24--SET	18	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1713	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNAS_AUTONOMIC_GANGLIA	1	1	0.1713	TRUE	0	0	0	434	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	16	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1523	0.0381	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNAS_AUTONOMIC_GANGLIA	1	1	0.1904	FALSE	499	1288	110	792	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	14	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	1	1	0.95	0.95	0.1332	0.0571	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKNAS_AUTONOMIC_GANGLIA	0.95	0.95	0.1903	TRUE	458	1351	185	561	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	11	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1047	0.1237	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNAS_AUTONOMIC_GANGLIA	0.96	1	0.2284	FALSE	499	1288	110	792	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	ARMC4P1--RP11-748L13.2	14	0	ARMC4P1	5853	chr10:27577753:+	RP11-748L13.2	13614	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1332	0	LOCAL_INVERSION:+:-:[42533],ARMC4P1->armadillo_repeat_containing_4_pseudogene_1,chr10:27547691-27577753:+,RP11-748L13.2->chr10:27620286-27630181:-	SKNAS_AUTONOMIC_GANGLIA	1	1	0.1332	TRUE	1	34	11	8	34	TRUE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	13	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	1	14	0.94	0.53	0.1237	0.0286	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKNAS_AUTONOMIC_GANGLIA	0.53	0.94	0.1523	TRUE	465	1949	224	605	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	13	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	13462	4	0	0.78	0.1237	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	0.78	0.1332	FALSE	230	193	14	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	11	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1047	0.0476	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNAS_AUTONOMIC_GANGLIA	1	1	0.1523	FALSE	499	1288	110	792	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	HSPBP1--GRK5	11	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1047	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SKNAS_AUTONOMIC_GANGLIA	1	1	0.1047	TRUE	1	39	0	134	39	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND5--MT-ATP8	8	7	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4	525	0.79	0.03	0.0761	0.0666	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0.03	0.79	0.1427	FALSE	43	37	8	105	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND5--MT-ATP8	6	14	MT-ND5	2795	chrM:14131:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0.1332	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	1	1	0.1903	FALSE	43	37	8	105	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND5--MT-ATP8	9	1	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	5299	4	0	0.71	0.0857	0.0095	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	0.71	0.0952	FALSE	41	30	6	102	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	21	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0286	0.1999	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNAS_AUTONOMIC_GANGLIA	0.96	1	0.2285	FALSE	499	1288	110	792	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO2	7	4	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	73	2	0.13	0.85	0.0666	0.0381	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKNAS_AUTONOMIC_GANGLIA	0.13	0.85	0.1047	FALSE	59	21	0	114	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO2	7	4	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	62	3	0.15	0.79	0.0666	0.0381	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKNAS_AUTONOMIC_GANGLIA	0.15	0.79	0.1047	FALSE	59	21	0	114	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	C15orf57--CBX3	6	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	54	18	0.18	0.4	0.0571	0.0571	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKNAS_AUTONOMIC_GANGLIA	0.18	0.4	0.1142	TRUE	267	562	48	632	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	4	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0381	0.1332	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNAS_AUTONOMIC_GANGLIA	1	1	0.1713	FALSE	499	1288	110	792	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	RP11-96H19.1--RP11-446N19.1	6	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0571	0.0571	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKNAS_AUTONOMIC_GANGLIA	0.92	1	0.1142	FALSE	515	4851	409	746	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	5	9	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	15405	0	0	1	0.0476	0.0857	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	1	0.1333	FALSE	231	217	16	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	6	5	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	21	0	0.34	1	0.0571	0.0476	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKNAS_AUTONOMIC_GANGLIA	0.34	1	0.1047	FALSE	21	45	1	60	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	4	11	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	14639	0	0	1	0.0381	0.1047	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	1	0.1428	FALSE	231	217	16	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	6	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	62	0	0.13	1	0.0571	0.0286	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKNAS_AUTONOMIC_GANGLIA	0.13	1	0.0857	FALSE	56	216	12	147	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO2	6	2	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	42	2	0.16	0.8	0.0571	0.019	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKNAS_AUTONOMIC_GANGLIA	0.16	0.8	0.0761	FALSE	59	21	0	114	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	5	6	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15337	4	0	0.73	0.0476	0.0571	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	0.73	0.1047	FALSE	231	217	16	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	4	10	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	15337	0	0	1	0.0381	0.0952	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	1	0.1333	FALSE	231	217	16	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	13	MT-ND4	2324	chrM:12083:+	MT-ATP8	5419	chrM:8406:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0286	0.1237	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0.94	1	0.1523	FALSE	209	205	15	279	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND5--MT-ATP8	4	7	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10	4	0.52	0.73	0.0381	0.0666	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0.52	0.73	0.1047	FALSE	43	37	8	105	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO2	5	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	44	4	0.14	0.64	0.0476	0.019	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKNAS_AUTONOMIC_GANGLIA	0.14	0.64	0.0666	FALSE	59	21	0	114	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	4	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	16167	0	0	1	0.0381	0.0476	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	1	0.0857	FALSE	231	217	16	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	5	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13498	59	0	0.09	0.0476	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	0.09	0.0571	FALSE	230	198	14	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	4	5	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	16858	0	0	1	0.0381	0.0476	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	1	0.0857	FALSE	231	217	16	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	4	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	3	1	0.75	0.0381	0.0476	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKNAS_AUTONOMIC_GANGLIA	0.75	1	0.0857	TRUE	274	363	69	150	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO2	4	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	70	1	0.1	0.89	0.0381	0.0381	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKNAS_AUTONOMIC_GANGLIA	0.1	0.89	0.0762	FALSE	59	21	0	114	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	PFKM--MT-ND4L	5	0	PFKM	16513	chr12:48531603:+	MT-ND4L	27661	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0476	0	PFKM->chr12:48498922-48540187:+,phosphofructokinase,_muscle,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKNAS_AUTONOMIC_GANGLIA	1	1	0.0476	FALSE	0	0	0	8	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	4	2	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	7521	0	0	1	0.0381	0.019	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	1	0.0571	FALSE	230	193	14	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	6	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14895	59	0	0.13	0.0286	0.0571	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	0.13	0.0857	FALSE	231	217	16	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	4	2	MT-ND4	1515	chrM:11274:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17232	59	0	0.09	0.0381	0.019	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	0.09	0.0571	FALSE	231	217	16	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	5	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	16202	0	0	1	0.0286	0.0476	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	1	0.0762	FALSE	231	217	16	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	5	MT-ND4	1394	chrM:11153:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	17717	0	0	1	0.0286	0.0476	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	1	0.0762	FALSE	231	217	16	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND5--MT-ATP8	4	1	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5449	59	0	0.08	0.0381	0.0095	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	0.08	0.0476	FALSE	41	30	6	102	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND5--MT-ATP8	3	5	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	3371	2	0	0.8	0.0286	0.0476	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	0.8	0.0762	FALSE	43	37	8	105	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	SF1--GNAS	4	1	SF1	10800	chr11:64534504:-	GNAS	29824	chr20:57466772:+	INCL_NON_REF_SPLICE	NO	178	65	0.03	0.07	0.0381	0.0095	GTEx_FI:{Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=3,Pituitary=3,Minor_Salivary_Gland=1,Brain_-_Hypothalamus=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SKNAS_AUTONOMIC_GANGLIA	0.03	0.07	0.0476	TRUE	0	0	0	2	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	3	MT-ND4	1793	chrM:11552:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	15296	808	0	0.01	0.0286	0.0286	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	0.01	0.0572	FALSE	231	217	16	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	2	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	NO	13413	0	0	1	0.0286	0.019	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	1	0.0476	FALSE	230	197	14	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO2	3	1	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	43	7	0.09	0.36	0.0286	0.0095	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKNAS_AUTONOMIC_GANGLIA	0.09	0.36	0.0381	FALSE	59	21	0	114	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO2	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	37	2	0.1	0.67	0.0286	0.0095	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKNAS_AUTONOMIC_GANGLIA	0.1	0.67	0.0381	FALSE	59	21	0	114	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	13480	80	0	0.05	0.0286	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	0	0.05	0.0381	FALSE	231	204	14	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.91	1	0.0095	0.0857	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKNAS_AUTONOMIC_GANGLIA	0.91	1	0.0952	FALSE	192	492	57	212	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	0	0.91	1	0.0095	0.0857	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKNAS_AUTONOMIC_GANGLIA	0.91	1	0.0952	FALSE	467	2173	244	435	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	HSPBP1--GRK5	3	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SKNAS_AUTONOMIC_GANGLIA	1	1	0.0286	TRUE	1	39	0	134	39	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNAS_AUTONOMIC_GANGLIA	1	1	0.0286	FALSE	231	204	14	283	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNAS_AUTONOMIC_GANGLIA	1	1	0.0286	FALSE	499	1288	110	792	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	SKNAS_AUTONOMIC_GANGLIA	1	1	0.0286	TRUE	22	156	2	142	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	WTAPP1--RUVBL1	3	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	SKNAS_AUTONOMIC_GANGLIA	1	1	0.0286	TRUE	9	252	6	66	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	1	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	3	1	0.73	0.0095	0.0666	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKNAS_AUTONOMIC_GANGLIA	0.73	1	0.0761	TRUE	160	277	29	98	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	1	6	RP11-444D3.1	8531	chr12:24430150:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	3	1	0.7	0.0095	0.0571	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKNAS_AUTONOMIC_GANGLIA	0.7	1	0.0666	TRUE	13	17	1	13	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	SF1--GNAS	2	1	SF1	3289	chr11:64543970:-	GNAS	32063	chr20:57470667:+	ONLY_REF_SPLICE	YES	251	1018	0.01	0	0.019	0.0095	GTEx_FI:{Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=3,Pituitary=3,Minor_Salivary_Gland=1,Brain_-_Hypothalamus=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SKNAS_AUTONOMIC_GANGLIA	0	0.01	0.0285	FALSE	4	13	1	15	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	DOCK1--RRP15	2	0	DOCK1	28364	chr10:128926028:+	RRP15	66172	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	SKNAS_AUTONOMIC_GANGLIA	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	PTPN3--TDRD7	2	0	PTPN3	23014	chr9:112166728:-	TDRD7	54768	chr9:100240721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	PTPN3->chr9:112137746-112260590:-,protein_tyrosine_phosphatase,_non-receptor_type_3,TDRD7->chr9:100174232-100258407:+,tudor_domain_containing_7	SKNAS_AUTONOMIC_GANGLIA	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	ZNF804A--EEF1D	2	0	ZNF804A	1705	chr2:185463797:+	EEF1D	22817	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	ZNF804A->chr2:185463093-185804219:+,zinc_finger_protein_804A,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SKNAS_AUTONOMIC_GANGLIA	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	NRG1--NRG1-IT1	1	3	NRG1	2344	chr8:31498245:+	NRG1-IT1	30006	chr8:31886895:+	ONLY_REF_SPLICE	YES	10	0	0.29	1	0.0095	0.0286	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+	SKNAS_AUTONOMIC_GANGLIA	0.29	1	0.0381	TRUE	1	0	0	3	0	TRUE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	CLINT1--PPP2CA	1	1	CLINT1	1246	chr5:157285938:-	PPP2CA	26497	chr5:133537712:-	ONLY_REF_SPLICE	NO	260	430	0.01	0	0.0095	0.0095	CLINT1->chr5:157212751-157286183:-,clathrin_interactor_1,PPP2CA->chr5:133530025-133561833:-,protein_phosphatase_2_catalytic_subunit_alpha	SKNAS_AUTONOMIC_GANGLIA	0	0.01	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	FARP1--MAPK1	1	1	FARP1	17351	chr13:98996120:+	MAPK1	67552	chr22:22162135:-	ONLY_REF_SPLICE	NO	54	23	0.04	0.08	0.0095	0.0095	FARP1->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_1,chr13:98794816-99102027:+,MAPK1->Oncogene{Bushman},chr22:22108789-22221970:-,mitogen-activated_protein_kinase_1	SKNAS_AUTONOMIC_GANGLIA	0.04	0.08	0.019	TRUE	0	0	0	1	0	FALSE	ACH-000260
SKNAS_AUTONOMIC_GANGLIA	TSPAN5--METAP1	1	1	TSPAN5	5664	chr4:99428829:-	METAP1	24467	chr4:99950018:+	ONLY_REF_SPLICE	YES	136	236	0.01	0.01	0.0095	0.0095	{Klijn_CCL:Breast=1,Colo-Rectal=1},TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1	SKNAS_AUTONOMIC_GANGLIA	0.01	0.01	0.019	FALSE	0	0	0	2	0	FALSE	ACH-000260
HS578T_BREAST	COL1A1--COL6A3	403	22	COL1A1	9913	chr17:48269862:-	COL6A3	52257	chr2:238261199:-	INCL_NON_REF_SPLICE	YES	12392	3532	0.03	0.11	4.9282	0.269	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS578T_BREAST	0.03	0.11	5.1972	TRUE	0	2	0	1	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--FN1	250	82	COL1A1	12966	chr17:48266809:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	13421	6566	0.02	0.05	3.0572	1.0028	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS578T_BREAST	0.02	0.05	4.06	TRUE	0	0	0	17	0	FALSE	ACH-000148
HS578T_BREAST	FN1--COL1A1	264	7	FN1	36954	chr2:216243980:-	COL1A1	69586	chr17:48264124:-	INCL_NON_REF_SPLICE	YES	9733	10360	0.03	0.03	3.2284	0.0856	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS578T_BREAST	0.03	0.03	3.314	TRUE	0	0	0	13	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL4A1	168	17	COL1A1	13229	chr17:48266546:-	COL4A1	55990	chr13:110818641:-	INCL_NON_REF_SPLICE	YES	13740	1476	0.01	0.11	2.0544	0.2079	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS578T_BREAST	0.01	0.11	2.2623	TRUE	0	0	0	3	0	FALSE	ACH-000148
HS578T_BREAST	LINC00152--AC093616.4	131	49	LINC00152	14196	chr2:87906288:+	AC093616.4	17233	chr2:88000503:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.602	0.5992	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	HS578T_BREAST	1	1	2.2012	FALSE	0	0	0	14	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL6A3	68	37	COL1A1	13029	chr17:48266746:-	COL6A3	53302	chr2:238259825:-	INCL_NON_REF_SPLICE	YES	12757	3479	0.01	0.03	0.8316	0.4525	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS578T_BREAST	0.01	0.03	1.2841	TRUE	0	1	0	1	0	FALSE	ACH-000148
HS578T_BREAST	OR51S1--TP53I11	64	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7826	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HS578T_BREAST	1	1	0.7826	TRUE	402	216	10	229	0	FALSE	ACH-000148
HS578T_BREAST	TIMM23B--LINC00843	53	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.96	0.6481	0.1467	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS578T_BREAST	0.96	1	0.7948	TRUE	508	994	45	981	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL6A3	35	36	COL1A1	13020	chr17:48266755:-	COL6A3	53302	chr2:238259825:-	INCL_NON_REF_SPLICE	YES	12602	3479	0.01	0.02	0.428	0.4402	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS578T_BREAST	0.01	0.02	0.8682	TRUE	0	1	0	1	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL4A1	25	51	COL1A1	12369	chr17:48267406:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	13665	1616	0.01	0.04	0.3057	0.6237	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS578T_BREAST	0.01	0.04	0.9294	TRUE	0	0	0	4	0	FALSE	ACH-000148
HS578T_BREAST	MT-TA--MT-TC	37	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4525	0.0367	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS578T_BREAST	1	1	0.4892	FALSE	462	80	0	856	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL4A1	13	89	COL1A1	13822	chr17:48265953:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	11174	1616	0.01	0.06	0.159	1.0884	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS578T_BREAST	0.01	0.06	1.2474	TRUE	0	0	0	4	0	FALSE	ACH-000148
HS578T_BREAST	MT-ND6--MT-ND5	31	4	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	2042	1	0.02	0.3791	0.0489	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS578T_BREAST	0.02	1	0.428	FALSE	101	855	57	72	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL4A1	3	103	COL1A1	17429	chr17:48262346:-	COL4A1	25793	chr13:110864798:-	INCL_NON_REF_SPLICE	YES	3327	1591	0.03	0.06	0.0367	1.2596	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS578T_BREAST	0.03	0.06	1.2963	TRUE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL6A3	16	48	COL1A1	13229	chr17:48266546:-	COL6A3	53302	chr2:238259825:-	INCL_NON_REF_SPLICE	NO	13739	3479	0	0.02	0.1957	0.587	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS578T_BREAST	0	0.02	0.7827	FALSE	0	1	0	1	0	FALSE	ACH-000148
HS578T_BREAST	COL6A3--MT-RNR2	27	4	COL6A3	41635	chr2:238249354:-	MT-RNR2	57522	chrM:1699:+	INCL_NON_REF_SPLICE	YES	3278	0	0.01	1	0.3302	0.0489	COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HS578T_BREAST	0.01	1	0.3791	FALSE	0	0	0	6	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL4A1	3	90	COL1A1	13831	chr17:48265944:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	11364	1616	0.01	0.05	0.0367	1.1006	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS578T_BREAST	0.01	0.05	1.1373	TRUE	0	0	0	4	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL4A1	3	90	COL1A1	14297	chr17:48265478:-	COL4A1	35704	chr13:110850958:-	INCL_NON_REF_SPLICE	YES	11687	1389	0.01	0.06	0.0367	1.1006	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS578T_BREAST	0.01	0.06	1.1373	TRUE	0	0	0	3	0	FALSE	ACH-000148
HS578T_BREAST	PLXDC1--TAF13	25	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3057	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS578T_BREAST	1	1	0.3057	TRUE	7	10	0	216	0	FALSE	ACH-000148
HS578T_BREAST	TIMM23--RP11-464F9.1	24	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2935	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS578T_BREAST	1	1	0.2935	TRUE	519	3926	326	965	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--FN1	5	75	COL1A1	12718	chr17:48267057:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	14680	6566	0.01	0.01	0.0611	0.9172	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS578T_BREAST	0.01	0.01	0.9783	TRUE	0	0	0	17	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--FN1	5	70	COL1A1	15650	chr17:48264125:-	FN1	58080	chr2:216243979:-	INCL_NON_REF_SPLICE	YES	10412	9742	0.01	0.01	0.0611	0.856	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS578T_BREAST	0.01	0.01	0.9171	TRUE	0	0	0	18	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL4A1	19	13	COL1A1	7649	chr17:48272126:-	COL4A1	45828	chr13:110831383:-	INCL_NON_REF_SPLICE	YES	10709	1675	0	0.02	0.2323	0.159	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS578T_BREAST	0	0.02	0.3913	TRUE	0	0	0	4	0	FALSE	ACH-000148
HS578T_BREAST	ITGAV--CNTN5	21	5	ITGAV	3767	chr2:187466878:+	CNTN5	39392	chr11:99426876:+	ONLY_REF_SPLICE	YES	196	0	0.12	1	0.2568	0.0611	ITGAV->chr2:187454792-187545628:+,integrin_subunit_alpha_V,CNTN5->chr11:98891683-100229616:+,contactin_5	HS578T_BREAST	0.12	1	0.3179	TRUE	0	0	0	1	0	TRUE	ACH-000148
HS578T_BREAST	COL1A1--COL4A1	9	30	COL1A1	7982	chr17:48271793:-	COL4A1	32989	chr13:110855938:-	INCL_NON_REF_SPLICE	YES	12775	1733	0	0.02	0.1101	0.3669	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS578T_BREAST	0	0.02	0.477	TRUE	0	0	0	4	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL6A3	3	52	COL1A1	14274	chr17:48265501:-	COL6A3	53302	chr2:238259825:-	INCL_NON_REF_SPLICE	NO	11965	3479	0	0.02	0.0367	0.6359	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS578T_BREAST	0	0.02	0.6726	FALSE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL6A3	4	48	COL1A1	13148	chr17:48266627:-	COL6A3	52257	chr2:238261199:-	INCL_NON_REF_SPLICE	YES	13429	3532	0	0.01	0.0489	0.587	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS578T_BREAST	0	0.01	0.6359	TRUE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--FN1	4	47	COL1A1	8475	chr17:48271300:-	FN1	26912	chr2:216295516:-	INCL_NON_REF_SPLICE	YES	14699	8145	0	0.01	0.0489	0.5747	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS578T_BREAST	0	0.01	0.6236	TRUE	0	0	0	8	0	FALSE	ACH-000148
HS578T_BREAST	MT-ND6--MT-TE	15	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1834	0.0245	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS578T_BREAST	0.94	1	0.2079	FALSE	499	1288	110	792	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL6A3	12	12	COL1A1	6972	chr17:48272803:-	COL6A3	53302	chr2:238259825:-	INCL_NON_REF_SPLICE	YES	12447	3479	0	0.01	0.1467	0.1467	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS578T_BREAST	0	0.01	0.2934	TRUE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL6A3	10	18	COL1A1	8021	chr17:48271754:-	COL6A3	53302	chr2:238259825:-	INCL_NON_REF_SPLICE	YES	12496	3479	0	0.01	0.1223	0.2201	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS578T_BREAST	0	0.01	0.3424	TRUE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL6A3	1	50	COL1A1	13672	chr17:48266103:-	COL6A3	53292	chr2:238259835:-	ONLY_REF_SPLICE	NO	12188	3901	0	0.01	0.0122	0.6114	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS578T_BREAST	0	0.01	0.6236	TRUE	0	1	0	1	0	FALSE	ACH-000148
HS578T_BREAST	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.159	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HS578T_BREAST	1	1	0.159	TRUE	0	0	0	434	0	FALSE	ACH-000148
HS578T_BREAST	RP11-680G10.1--GSE1	11	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1345	0.0611	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS578T_BREAST	1	1	0.1956	TRUE	458	1351	185	561	0	FALSE	ACH-000148
HS578T_BREAST	RP11-680G10.1--GSE1	11	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	13	1	0.55	0.1345	0.0611	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS578T_BREAST	0.55	1	0.1956	TRUE	465	1949	224	605	0	FALSE	ACH-000148
HS578T_BREAST	CHSY3--HSPA8P4	11	4	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	72	0	0.17	1	0.1345	0.0489	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	HS578T_BREAST	0.17	1	0.1834	FALSE	89	26	1	44	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--FN1	4	32	COL1A1	12982	chr17:48266793:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	12640	10983	0	0	0.0489	0.3913	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS578T_BREAST	0	0	0.4402	TRUE	0	0	0	17	0	FALSE	ACH-000148
HS578T_BREAST	MT-ND4--MT-ATP8	12	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1467	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS578T_BREAST	1	1	0.1467	FALSE	230	193	14	283	0	FALSE	ACH-000148
HS578T_BREAST	MT-ND6--MT-TE	9	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1101	0.1345	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS578T_BREAST	0.95	1	0.2446	FALSE	499	1288	110	792	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL6A3	6	21	COL1A1	9739	chr17:48270036:-	COL6A3	52266	chr2:238261190:-	INCL_NON_REF_SPLICE	YES	12607	3513	0	0.01	0.0734	0.2568	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS578T_BREAST	0	0.01	0.3302	TRUE	0	2	0	1	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--FN1	5	24	COL1A1	12367	chr17:48267408:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	13590	10983	0	0	0.0611	0.2935	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS578T_BREAST	0	0	0.3546	TRUE	0	0	0	13	0	FALSE	ACH-000148
HS578T_BREAST	FN1--COL1A1	3	30	FN1	42496	chr2:216237136:-	COL1A1	58592	chr17:48275118:-	INCL_NON_REF_SPLICE	NO	11043	10103	0	0	0.0367	0.3669	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS578T_BREAST	0	0	0.4036	FALSE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	MT-ND6--MT-ND5	9	3	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	1971	1	0.01	0.1101	0.0367	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS578T_BREAST	0.01	1	0.1468	FALSE	101	855	57	72	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--FN1	5	18	COL1A1	7994	chr17:48271781:-	FN1	62623	chr2:216238134:-	INCL_NON_REF_SPLICE	YES	12722	12046	0	0	0.0611	0.2201	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS578T_BREAST	0	0	0.2812	TRUE	0	0	0	8	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL4A1	7	9	COL1A1	5780	chr17:48273995:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	10646	1616	0	0.01	0.0856	0.1101	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS578T_BREAST	0	0.01	0.1957	TRUE	0	0	0	4	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL4A1	3	25	COL1A1	13884	chr17:48265891:-	COL4A1	50826	chr13:110826319:-	INCL_NON_REF_SPLICE	NO	13210	1896	0	0.01	0.0367	0.3057	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS578T_BREAST	0	0.01	0.3424	FALSE	0	0	0	3	0	FALSE	ACH-000148
HS578T_BREAST	RPS6KB1--VMP1	8	4	RPS6KB1	7326	chr17:57992064:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	20	115	0.38	0.09	0.0978	0.0489	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HS578T_BREAST	0.09	0.38	0.1467	TRUE	0	8	0	9	5	TRUE	ACH-000148
HS578T_BREAST	COL1A1--FN1	5	15	COL1A1	7831	chr17:48271944:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	11695	10983	0	0	0.0611	0.1834	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS578T_BREAST	0	0	0.2445	TRUE	0	0	0	14	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--FN1	4	18	COL1A1	7985	chr17:48271790:-	FN1	61608	chr2:216239951:-	INCL_NON_REF_SPLICE	YES	12760	11000	0	0	0.0489	0.2201	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS578T_BREAST	0	0	0.269	TRUE	0	0	0	14	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL6A3	3	21	COL1A1	9420	chr17:48270355:-	COL6A3	52229	chr2:238261227:-	ONLY_REF_SPLICE	YES	13789	3938	0	0.01	0.0367	0.2568	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS578T_BREAST	0	0.01	0.2935	TRUE	0	2	0	1	0	FALSE	ACH-000148
HS578T_BREAST	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0978	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HS578T_BREAST	1	1	0.0978	FALSE	13	9	0	364	0	FALSE	ACH-000148
HS578T_BREAST	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0978	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HS578T_BREAST	1	1	0.0978	FALSE	13	9	0	364	0	FALSE	ACH-000148
HS578T_BREAST	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0978	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS578T_BREAST	1	1	0.0978	FALSE	230	198	14	283	0	FALSE	ACH-000148
HS578T_BREAST	MT-ND6--MT-TE	5	12	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0.1467	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS578T_BREAST	1	1	0.2078	FALSE	499	1288	110	792	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL6A3	2	23	COL1A1	9617	chr17:48270158:-	COL6A3	51410	chr2:238262046:-	ONLY_REF_SPLICE	YES	13237	4389	0	0.01	0.0245	0.2813	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS578T_BREAST	0	0.01	0.3058	TRUE	0	2	0	1	0	FALSE	ACH-000148
HS578T_BREAST	ADAM23--PARD3B	7	2	ADAM23	3837	chr2:207346032:+	PARD3B	67904	chr2:206480180:+	ONLY_REF_SPLICE	YES	23	3	0.28	0.75	0.0856	0.0245	ADAM23->ADAM_metallopeptidase_domain_23,Oncogene{Bushman},chr2:207308263-207485851:+,PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta	HS578T_BREAST	0.28	0.75	0.1101	TRUE	0	0	0	2	0	TRUE	ACH-000148
HS578T_BREAST	FAM32A--TPM4	7	2	FAM32A	1386	chr19:16296576:+	TPM4	15166	chr19:16192723:+	ONLY_REF_SPLICE	YES	150	4775	0.06	0	0.0856	0.0245	LOCAL_REARRANGEMENT:+:[82378],FAM32A->chr19:16296191-16302857:+,family_with_sequence_similarity_32_member_A,TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4	HS578T_BREAST	0	0.06	0.1101	TRUE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	MT-TA--MT-TC	7	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0856	0.0245	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS578T_BREAST	1	1	0.1101	FALSE	462	80	0	856	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL6A3	3	17	COL1A1	7367	chr17:48272408:-	COL6A3	53292	chr2:238259835:-	ONLY_REF_SPLICE	YES	13316	3901	0	0.01	0.0367	0.2079	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS578T_BREAST	0	0.01	0.2446	TRUE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	LINC00152--AC093616.4	4	13	LINC00152	1278	chr2:87755164:+	AC093616.4	17233	chr2:88000503:+	ONLY_REF_SPLICE	YES	565	0	0.03	1	0.0489	0.159	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	HS578T_BREAST	0.03	1	0.2079	FALSE	0	0	0	11	0	FALSE	ACH-000148
HS578T_BREAST	MT-ND4--MT-ATP8	6	4	MT-ND4	2053	chrM:11812:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7642	34	0	0.23	0.0734	0.0489	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS578T_BREAST	0	0.23	0.1223	FALSE	231	215	16	283	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL4A1	4	11	COL1A1	5922	chr17:48273853:-	COL4A1	35744	chr13:110850918:-	INCL_NON_REF_SPLICE	YES	10632	1753	0	0.01	0.0489	0.1345	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS578T_BREAST	0	0.01	0.1834	TRUE	0	0	0	2	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL4A1	1	23	COL1A1	7841	chr17:48271934:-	COL4A1	41116	chr13:110839676:-	ONLY_REF_SPLICE	NO	12954	1534	0	0.02	0.0122	0.2813	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS578T_BREAST	0	0.02	0.2935	TRUE	0	0	0	2	0	FALSE	ACH-000148
HS578T_BREAST	RP11-640M9.1--SEC22B	6	3	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	25754	chr1:145103908:+	ONLY_REF_SPLICE	YES	10	356	0.47	0.02	0.0734	0.0367	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HS578T_BREAST	0.02	0.47	0.1101	TRUE	14	18	7	11	0	FALSE	ACH-000148
HS578T_BREAST	MT-ND6--MT-TE	6	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0734	0.0245	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS578T_BREAST	0.89	1	0.0979	FALSE	499	1288	110	792	0	FALSE	ACH-000148
HS578T_BREAST	CTGF--ACTB	5	4	CTGF	1136	chr6:132272378:-	ACTB	10623	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	479	2	0.02	0.82	0.0611	0.0489	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS578T_BREAST	0.02	0.82	0.11	TRUE	0	0	0	9	0	FALSE	ACH-000148
HS578T_BREAST	IGFBP7--MT-ND4L	6	0	IGFBP7	1091	chr4:57976461:-	MT-ND4L	10273	chrM:10467:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0734	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS578T_BREAST	1	1	0.0734	FALSE	1	0	0	30	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL6A3	5	3	COL1A1	5797	chr17:48273978:-	COL6A3	54275	chr2:238258852:-	ONLY_REF_SPLICE	YES	11300	3021	0	0	0.0611	0.0367	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS578T_BREAST	0	0	0.0978	FALSE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	COL3A1--COL6A1	5	2	COL3A1	23159	chr2:189871176:+	COL6A1	44310	chr21:47418042:+	INCL_NON_REF_SPLICE	NO	5513	1743	0	0	0.0611	0.0245	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS578T_BREAST	0	0	0.0856	FALSE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	AC016629.8--GPR98	4	4	AC016629.8	1281	chr19:59070776:+	GPR98	64979	chr5:90020649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0489	0.0489	AC016629.8->chr19:59070496-59086164:+,GPR98->chr5:89825161-90460038:+	HS578T_BREAST	1	1	0.0978	TRUE	0	0	0	1	0	TRUE	ACH-000148
HS578T_BREAST	CDH13--RP11-22H5.2	5	0	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0611	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	HS578T_BREAST	1	1	0.0611	FALSE	14	31	0	36	0	FALSE	ACH-000148
HS578T_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS578T_BREAST	1	1	0.0611	FALSE	230	193	14	283	0	FALSE	ACH-000148
HS578T_BREAST	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS578T_BREAST	1	1	0.0611	FALSE	462	80	0	856	0	FALSE	ACH-000148
HS578T_BREAST	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0611	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS578T_BREAST	1	1	0.0611	FALSE	292	1546	117	613	0	FALSE	ACH-000148
HS578T_BREAST	COL3A1--COL6A1	4	3	COL3A1	20813	chr2:189868830:+	COL6A1	37837	chr21:47409022:+	INCL_NON_REF_SPLICE	YES	4578	1995	0	0	0.0489	0.0367	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS578T_BREAST	0	0	0.0856	FALSE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	CTGF--ACTB	3	7	CTGF	1204	chr6:132272310:-	ACTB	10614	chr7:5570232:-	INCL_NON_REF_SPLICE	YES	327	2	0.03	0.83	0.0367	0.0856	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS578T_BREAST	0.03	0.83	0.1223	TRUE	0	0	0	9	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL6A3	1	14	COL1A1	6847	chr17:48272928:-	COL6A3	47436	chr2:238266525:-	ONLY_REF_SPLICE	YES	12326	3573	0	0	0.0122	0.1712	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS578T_BREAST	0	0	0.1834	TRUE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--FN1	3	6	COL1A1	6258	chr17:48273517:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	12871	10983	0	0	0.0367	0.0734	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS578T_BREAST	0	0	0.1101	TRUE	0	0	0	10	0	FALSE	ACH-000148
HS578T_BREAST	MT-ND6--MT-ND5	4	1	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	1	1082	0.83	0	0.0489	0.0122	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS578T_BREAST	0	0.83	0.0611	FALSE	101	855	57	72	0	FALSE	ACH-000148
HS578T_BREAST	MT-ND6--MT-ND5	4	1	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	1557	1148	0	0	0.0489	0.0122	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS578T_BREAST	0	0	0.0611	FALSE	101	855	57	72	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL6A3	3	4	COL1A1	12068	chr17:48267707:-	COL6A3	65467	chr2:238244906:-	INCL_NON_REF_SPLICE	NO	13873	4990	0	0	0.0367	0.0489	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS578T_BREAST	0	0	0.0856	FALSE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	COL1A2--PTMA	4	0	COL1A2	14602	chr7:94041987:+	PTMA	37657	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HS578T_BREAST	1	1	0.0489	TRUE	0	0	0	9	0	TRUE	ACH-000148
HS578T_BREAST	COL3A1--LDHA	3	4	COL3A1	25702	chr2:189873719:+	LDHA	32631	chr11:18416110:+	INCL_NON_REF_SPLICE	YES	4210	1	0	0.88	0.0367	0.0489	COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	HS578T_BREAST	0	0.88	0.0856	FALSE	0	0	0	2	0	FALSE	ACH-000148
HS578T_BREAST	ENO1--SPARC	4	0	ENO1	11888	chr1:8922981:-	SPARC	26019	chr5:151047141:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS578T_BREAST	1	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000148
HS578T_BREAST	MGST1--UBB	4	0	MGST1	5873	chr12:16507204:+	UBB	25603	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0489	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,UBB->chr17:16284112-16286059:+,ubiquitin_B	HS578T_BREAST	1	1	0.0489	TRUE	0	0	0	2	0	TRUE	ACH-000148
HS578T_BREAST	MT-ND4--MT-ATP8	3	4	MT-ND4	1779	chrM:11538:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7785	5	0	0.58	0.0367	0.0489	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS578T_BREAST	0	0.58	0.0856	FALSE	231	217	16	283	0	FALSE	ACH-000148
HS578T_BREAST	RP11-120D5.1--MID1	4	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0489	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HS578T_BREAST	1	1	0.0489	FALSE	16	356	14	466	0	FALSE	ACH-000148
HS578T_BREAST	SERPINE1--MT-ND4	4	0	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HS578T_BREAST	1	1	0.0489	FALSE	1	0	0	29	0	FALSE	ACH-000148
HS578T_BREAST	VIM--CYR61	4	0	VIM	2193	chr10:17271450:+	CYR61	12322	chr1:86046561:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,VIM->chr10:17270258-17279592:+,vimentin,CYR61->Oncogene{Bushman},chr1:86046444-86049645:+,cysteine_rich_angiogenic_inducer_61	HS578T_BREAST	1	1	0.0489	TRUE	0	0	0	2	0	TRUE	ACH-000148
HS578T_BREAST	VIM--TPM2	4	0	VIM	2115	chr10:17271372:+	TPM2	13298	chr9:35689924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS578T_BREAST	1	1	0.0489	TRUE	0	0	0	8	0	TRUE	ACH-000148
HS578T_BREAST	PRR16--CTD-2334D19.1	3	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	70	0	0.07	1	0.0367	0.0245	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS578T_BREAST	0.07	1	0.0612	FALSE	56	216	12	147	0	FALSE	ACH-000148
HS578T_BREAST	C15orf57--CBX3	3	1	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	17	10	0.19	0.29	0.0367	0.0122	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS578T_BREAST	0.19	0.29	0.0489	TRUE	267	562	48	632	0	FALSE	ACH-000148
HS578T_BREAST	CTGF--ACTB	3	1	CTGF	1576	chr6:132271938:-	ACTB	12031	chr7:5568815:-	INCL_NON_REF_SPLICE	NO	1336	10342	0	0	0.0367	0.0122	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS578T_BREAST	0	0	0.0489	FALSE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	MRPS31P5--TPTE2P2	3	1	MRPS31P5	7597	chr13:52754717:-	TPTE2P2	23110	chr13:52890534:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0367	0.0122	LOCAL_REARRANGEMENT:-:[24879],MRPS31P5->chr13:52741844-52768600:-,mitochondrial_ribosomal_protein_S31_pseudogene_5,TPTE2P2->chr13:52793479-52908412:-,transmembrane_phosphoinositide_3-phosphatase_and_tensin_homolog_2_pseudogene_2	HS578T_BREAST	0.67	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000148
HS578T_BREAST	MT-TA--MT-TC	3	1	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0.0122	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS578T_BREAST	1	1	0.0489	FALSE	462	80	0	856	0	FALSE	ACH-000148
HS578T_BREAST	SERPINE1--MT-ND4	3	1	SERPINE1	4782	chr7:100775275:+	MT-ND4	14145	chrM:11274:+	INCL_NON_REF_SPLICE	YES	5966	9571	0	0	0.0367	0.0122	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HS578T_BREAST	0	0	0.0489	FALSE	1	0	0	29	0	FALSE	ACH-000148
HS578T_BREAST	ITGAV--CNTN5	2	4	ITGAV	3767	chr2:187466878:+	CNTN5	41639	chr11:99690275:+	ONLY_REF_SPLICE	YES	196	3	0.03	0.67	0.0245	0.0489	ITGAV->chr2:187454792-187545628:+,integrin_subunit_alpha_V,CNTN5->chr11:98891683-100229616:+,contactin_5	HS578T_BREAST	0.03	0.67	0.0734	TRUE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS578T_BREAST	1	1	0.0367	FALSE	231	204	14	283	0	FALSE	ACH-000148
HS578T_BREAST	MT-ND6--MT-ND5	3	0	MT-ND6	1412	chrM:14262:-	MT-ND5	6311	chrM:14122:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS578T_BREAST	1	1	0.0367	FALSE	101	855	57	72	0	FALSE	ACH-000148
HS578T_BREAST	TPM2--VIM	3	0	TPM2	2195	chr9:35689823:-	VIM	11821	chr10:17271414:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	GTEx&tcga_normals:35/3694=0.95%,GTEx:0.79%,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),VIM->chr10:17270258-17279592:+,vimentin	HS578T_BREAST	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000148
HS578T_BREAST	VIM--CYR61	3	0	VIM	2081	chr10:17271338:+	CYR61	12321	chr1:86046560:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,VIM->chr10:17270258-17279592:+,vimentin,CYR61->Oncogene{Bushman},chr1:86046444-86049645:+,cysteine_rich_angiogenic_inducer_61	HS578T_BREAST	1	1	0.0367	TRUE	0	0	0	2	0	TRUE	ACH-000148
HS578T_BREAST	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.33	1	0.0245	0.0245	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS578T_BREAST	0.33	1	0.049	FALSE	164	806	69	479	0	FALSE	ACH-000148
HS578T_BREAST	AKT3--CEP170	2	1	AKT3	3500	chr1:244006427:-	CEP170	40024	chr1:243388623:-	ONLY_REF_SPLICE	YES	48	61	0.06	0.05	0.0245	0.0122	{Klijn_CCL:Head-Neck=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	HS578T_BREAST	0.05	0.06	0.0367	TRUE	0	0	0	2	0	FALSE	ACH-000148
HS578T_BREAST	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	6	0	0.33	1	0.0245	0.0122	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS578T_BREAST	0.33	1	0.0367	FALSE	125	705	46	456	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL4A1	1	4	COL1A1	2858	chr17:48276917:-	COL4A1	25626	chr13:110864965:-	ONLY_REF_SPLICE	YES	6766	1536	0	0	0.0122	0.0489	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS578T_BREAST	0	0	0.0611	FALSE	0	0	0	2	0	FALSE	ACH-000148
HS578T_BREAST	CPQ--SDC2	2	0	CPQ	1176	chr8:97657630:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	HS578T_BREAST	1	1	0.0245	TRUE	1	37	5	9	9	FALSE	ACH-000148
HS578T_BREAST	DNAJC25--UGCG	2	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	HS578T_BREAST	1	1	0.0245	TRUE	50	73	10	50	0	FALSE	ACH-000148
HS578T_BREAST	CPQ--SDC2	1	2	CPQ	9826	chr8:97892233:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	171	1485	0.02	0	0.0122	0.0245	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	HS578T_BREAST	0	0.02	0.0367	FALSE	2	35	6	7	0	FALSE	ACH-000148
HS578T_BREAST	AXL--QTRT1	1	1	AXL	3854	chr19:41727961:+	QTRT1	29427	chr19:10822837:+	ONLY_REF_SPLICE	NO	915	52	0	0.04	0.0122	0.0122	AXL->AXL_receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:41725108-41767671:+,QTRT1->chr19:10812106-10824113:+,queuine_tRNA-ribosyltransferase_catalytic_subunit_1	HS578T_BREAST	0	0.04	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	COL1A1--COL6A3	1	1	COL1A1	5234	chr17:48274541:-	COL6A3	45930	chr2:238268031:-	ONLY_REF_SPLICE	NO	10353	3638	0	0	0.0122	0.0122	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS578T_BREAST	0	0	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	COL6A2--FLNA	1	1	COL6A2	16668	chr21:47546455:+	FLNA	37696	chrX:153583440:-	ONLY_REF_SPLICE	YES	3352	2587	0	0	0.0122	0.0122	GTEx&tcga_normals:118/3694=3.19%,GTEx:2.07%,GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=2},COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,FLNA->chrX:153576892-153603006:-,filamin_A	HS578T_BREAST	0	0	0.0244	FALSE	0	1	0	1	0	FALSE	ACH-000148
HS578T_BREAST	CRIM1--FEZ2	1	1	CRIM1	18863	chr2:36749456:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	NO	1042	162	0	0.01	0.0122	0.0122	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	HS578T_BREAST	0	0.01	0.0244	FALSE	2	2	0	15	0	FALSE	ACH-000148
HS578T_BREAST	CRIM1--FEZ2	1	1	CRIM1	22541	chr2:36771641:+	FEZ2	38223	chr2:36806008:-	ONLY_REF_SPLICE	YES	1298	150	0	0.01	0.0122	0.0122	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	HS578T_BREAST	0	0.01	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	DDX46--CSDE1	1	1	DDX46	27531	chr5:134164436:+	CSDE1	43217	chr1:115282346:-	ONLY_REF_SPLICE	YES	41	489	0.05	0	0.0122	0.0122	DDX46->DEAD-box_helicase_46,chr5:134094469-134190823:+,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	HS578T_BREAST	0	0.05	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	KIF26B--SMYD3	1	1	KIF26B	2699	chr1:245319985:+	SMYD3	55692	chr1:246093239:-	ONLY_REF_SPLICE	NO	9	52	0.18	0.04	0.0122	0.0122	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	HS578T_BREAST	0.04	0.18	0.0244	TRUE	0	18	0	6	12	TRUE	ACH-000148
HS578T_BREAST	TMEM198--SPEG	1	1	TMEM198	2231	chr2:220409615:+	SPEG	22518	chr2:220326604:+	ONLY_REF_SPLICE	NO	2	98	0.5	0.02	0.0122	0.0122	LOCAL_REARRANGEMENT:+:[45376],TMEM198->chr2:220408385-220415317:+,transmembrane_protein_198,SPEG->SPEG_complex_locus,chr2:220299568-220363009:+	HS578T_BREAST	0.02	0.5	0.0244	TRUE	0	0	0	1	0	FALSE	ACH-000148
HS578T_BREAST	TSPAN5--METAP1	1	1	TSPAN5	5664	chr4:99428829:-	METAP1	24467	chr4:99950018:+	ONLY_REF_SPLICE	NO	67	113	0.03	0.02	0.0122	0.0122	{Klijn_CCL:Breast=1,Colo-Rectal=1},TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1	HS578T_BREAST	0.02	0.03	0.0244	TRUE	0	0	0	2	0	FALSE	ACH-000148
NCIH1437_LUNG	ASPH--EIF4EBP1	182	132	ASPH	27900	chr8:62531537:-	EIF4EBP1	51290	chr8:37914599:+	ONLY_REF_SPLICE	YES	573	1116	0.35	0.22	2.3885	1.7323	{Klijn_CCL:Lung=1},ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,EIF4EBP1->Oncogene{Bushman},chr8:37887859-37917883:+,eukaryotic_translation_initiation_factor_4E_binding_protein_1	NCIH1437_LUNG	0.22	0.35	4.1208	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	SIL1--MZB1	167	89	SIL1	6800	chr5:138532130:-	MZB1	29749	chr5:138725575:-	INCL_NON_REF_SPLICE	YES	18	5	0.93	0.98	2.1916	1.168	LOCAL_REARRANGEMENT:-:[93923],SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,MZB1->chr5:138723169-138725770:-,marginal_zone_B_and_B1_cell_specific_protein	NCIH1437_LUNG	0.93	0.98	3.3596	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	ERGIC2--CHRNA6	63	25	ERGIC2	7282	chr12:29519810:-	CHRNA6	25799	chr8:42620347:-	ONLY_REF_SPLICE	YES	72	0	0.55	1	0.8268	0.3281	ERGIC2->ERGIC_and_golgi_2,chr12:29490285-29534122:-,CHRNA6->cholinergic_receptor_nicotinic_alpha_6_subunit,chr8:42607763-42651535:-	NCIH1437_LUNG	0.55	1	1.1549	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	TIMM23B--LINC00843	47	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.6168	0.2625	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1437_LUNG	0.99	1	0.8793	TRUE	508	994	45	981	0	FALSE	ACH-000589
NCIH1437_LUNG	MT-TA--MT-TC	37	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4856	0.0525	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1437_LUNG	1	1	0.5381	FALSE	462	80	0	856	0	FALSE	ACH-000589
NCIH1437_LUNG	OR51S1--TP53I11	28	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3675	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH1437_LUNG	1	1	0.3675	TRUE	402	216	10	229	0	FALSE	ACH-000589
NCIH1437_LUNG	MT-ND5--MT-ATP8	25	4	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2789	6	0.01	0.83	0.3281	0.0525	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1437_LUNG	0.01	0.83	0.3806	FALSE	43	37	8	105	0	FALSE	ACH-000589
NCIH1437_LUNG	TIMM23--RP11-464F9.1	25	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	302	11	0.08	0.71	0.3281	0.0262	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1437_LUNG	0.08	0.71	0.3543	TRUE	519	3926	326	965	0	FALSE	ACH-000589
NCIH1437_LUNG	ASPH--EIF4EBP1	2	85	ASPH	23555	chr8:62546242:-	EIF4EBP1	51290	chr8:37914599:+	ONLY_REF_SPLICE	YES	2818	1116	0.03	0.07	0.0262	1.1155	{Klijn_CCL:Lung=1},ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,EIF4EBP1->Oncogene{Bushman},chr8:37887859-37917883:+,eukaryotic_translation_initiation_factor_4E_binding_protein_1	NCIH1437_LUNG	0.03	0.07	1.1417	TRUE	0	0	0	1	0	FALSE	ACH-000589
NCIH1437_LUNG	HEXDC--SLC16A3	20	13	HEXDC	14006	chr17:80399765:+	SLC16A3	27741	chr17:80196578:+	ONLY_REF_SPLICE	YES	53	851	0.38	0.04	0.2625	0.1706	{Klijn_CCL:Lung=1},HEXDC->chr17:80376194-80400521:+,hexosaminidase_D,SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3	NCIH1437_LUNG	0.04	0.38	0.4331	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	MT-ND4--MT-ND4L	5	73	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	8	0	0.91	1	0.0656	0.958	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1437_LUNG	0.91	1	1.0236	FALSE	344	826	44	306	0	FALSE	ACH-000589
NCIH1437_LUNG	MT-ND4--MT-ND4L	4	76	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	33	0	0.71	1	0.0525	0.9974	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1437_LUNG	0.71	1	1.0499	FALSE	344	826	44	306	0	FALSE	ACH-000589
NCIH1437_LUNG	KANSL1--ARL17B	17	14	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	19	100	0.62	0.24	0.2231	0.1837	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH1437_LUNG	0.24	0.62	0.4068	TRUE	181	1564	124	196	0	FALSE	ACH-000589
NCIH1437_LUNG	RP4-565E6.1--HYDIN	16	14	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.21	0.1837	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1437_LUNG	1	1	0.3937	TRUE	456	1387	91	133	0	FALSE	ACH-000589
NCIH1437_LUNG	RP5-1033H22.2--RP11-183M13.1	16	9	RP5-1033H22.2	2387	chr1:94060006:+	RP11-183M13.1	12171	chr1:78715868:+	ONLY_REF_SPLICE	YES	11	0	0.69	1	0.21	0.1181	RP5-1033H22.2->chr1:94057756-94071130:+,RP11-183M13.1->chr1:78695283-78835149:+	NCIH1437_LUNG	0.69	1	0.3281	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	RP11-96H19.1--RP11-446N19.1	15	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	0	0.84	1	0.1969	0.1575	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1437_LUNG	0.84	1	0.3544	FALSE	515	4851	409	746	0	FALSE	ACH-000589
NCIH1437_LUNG	BID--MICAL3	15	1	BID	1390	chr22:18257147:-	MICAL3	70306	chr22:18274067:-	ONLY_REF_SPLICE	YES	20	24	0.44	0.4	0.1969	0.0131	LOCAL_REARRANGEMENT:-:[12879],BID->BH3_interacting_domain_death_agonist,Oncogene{Bushman},chr22:18216906-18257536:-,MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3	NCIH1437_LUNG	0.4	0.44	0.21	TRUE	0	2	0	1	1	TRUE	ACH-000589
NCIH1437_LUNG	THSD4--LRRC49	12	2	THSD4	7149	chr15:71549054:+	LRRC49	65823	chr15:71341748:+	ONLY_REF_SPLICE	YES	15	6	0.48	0.7	0.1575	0.0262	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:6],{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[46877],THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4,LRRC49->chr15:71145578-71342414:+,leucine_rich_repeat_containing_49	NCIH1437_LUNG	0.48	0.7	0.1837	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	MT-ND5--MT-ATP8	9	10	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	9	0	0.68	1	0.1181	0.1312	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1437_LUNG	0.68	1	0.2493	FALSE	43	37	8	105	0	FALSE	ACH-000589
NCIH1437_LUNG	KIAA0947--MARCH11	10	5	KIAA0947	19928	chr5:5466615:+	MARCH11	33453	chr5:16091190:-	ONLY_REF_SPLICE	YES	16	0	0.48	1	0.1312	0.0656	{Klijn_CCL:Lung=1},KIAA0947->chr5:5420777-5490347:+,MARCH11->chr5:16067248-16180871:-,membrane_associated_ring-CH-type_finger_11	NCIH1437_LUNG	0.48	1	0.1968	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	LPCAT1--SKP2	9	3	LPCAT1	4774	chr5:1494815:-	SKP2	26852	chr5:36152873:+	ONLY_REF_SPLICE	YES	191	121	0.06	0.09	0.1181	0.0394	LPCAT1->chr5:1456595-1524092:-,lysophosphatidylcholine_acyltransferase_1,SKP2->Oncogene{Bushman},S-phase_kinase-associated_protein_2,_E3_ubiquitin_protein_ligase,chr5:36152091-36184421:+	NCIH1437_LUNG	0.06	0.09	0.1575	TRUE	0	0	0	1	0	FALSE	ACH-000589
NCIH1437_LUNG	MT-TA--MT-TC	8	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.105	0.0525	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1437_LUNG	1	1	0.1575	FALSE	462	80	0	856	0	FALSE	ACH-000589
NCIH1437_LUNG	MT-ND5--MT-ATP8	8	3	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5092	40	0	0.22	0.105	0.0394	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1437_LUNG	0	0.22	0.1444	FALSE	43	37	8	105	0	FALSE	ACH-000589
NCIH1437_LUNG	ZDHHC11B--CEP72	7	5	ZDHHC11B	11667	chr5:730549:-	CEP72	19828	chr5:619105:+	ONLY_REF_SPLICE	YES	6	5	0.67	0.71	0.0919	0.0656	LOCAL_INVERSION:-:+:[43192],ZDHHC11B->chr5:710475-767067:-,zinc_finger_DHHC-type_containing_11B,CEP72->centrosomal_protein_72,chr5:612387-667283:+	NCIH1437_LUNG	0.67	0.71	0.1575	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	C15orf57--CBX3	5	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	14	16	0.55	0.52	0.0656	0.1575	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1437_LUNG	0.52	0.55	0.2231	TRUE	267	562	48	632	0	FALSE	ACH-000589
NCIH1437_LUNG	RP11-123O10.4--GRIP1	7	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0919	0.0525	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1437_LUNG	1	1	0.1444	FALSE	416	2512	207	587	0	FALSE	ACH-000589
NCIH1437_LUNG	GPR132--JAG2	7	2	GPR132	7466	chr14:105517915:-	JAG2	27722	chr14:105607586:-	INCL_NON_REF_SPLICE	YES	2	9	0.82	0.5	0.0919	0.0262	LOCAL_REARRANGEMENT:-:[75536],GPR132->G_protein-coupled_receptor_132,chr14:105515728-105531782:-,JAG2->Oncogene{Bushman},chr14:105607318-105635161:-,jagged_2	NCIH1437_LUNG	0.5	0.82	0.1181	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	MT-ND4--MT-ND4L	6	4	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	82	0	0.11	1	0.0787	0.0525	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1437_LUNG	0.11	1	0.1312	FALSE	344	827	44	306	0	FALSE	ACH-000589
NCIH1437_LUNG	MT-ND5--MT-ATP8	5	6	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	9	446	0.55	0.02	0.0656	0.0787	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1437_LUNG	0.02	0.55	0.1443	FALSE	43	37	8	105	0	FALSE	ACH-000589
NCIH1437_LUNG	MT-ND4--MT-ND4L	5	5	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	41	0	0.2	1	0.0656	0.0656	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1437_LUNG	0.2	1	0.1312	FALSE	344	826	44	306	0	FALSE	ACH-000589
NCIH1437_LUNG	MT-ND5--MT-ND6	4	5	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	5	2855	0.64	0	0.0525	0.0656	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH1437_LUNG	0	0.64	0.1181	FALSE	26	124	4	93	0	FALSE	ACH-000589
NCIH1437_LUNG	RP11-96H19.1--RP11-446N19.1	2	13	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0.1706	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1437_LUNG	1	1	0.1968	FALSE	192	492	57	212	0	FALSE	ACH-000589
NCIH1437_LUNG	RP5-1033H22.2--PTGFR	5	1	RP5-1033H22.2	2387	chr1:94060006:+	PTGFR	12088	chr1:78864636:+	ONLY_REF_SPLICE	YES	11	0	0.35	1	0.0656	0.0131	RP5-1033H22.2->chr1:94057756-94071130:+,PTGFR->chr1:78769568-79005434:+,prostaglandin_F_receptor	NCIH1437_LUNG	0.35	1	0.0787	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	SNAPC3--ADAMTSL1	4	5	SNAPC3	5811	chr9:15447242:+	ADAMTSL1	31410	chr9:18680310:+	ONLY_REF_SPLICE	YES	22	0	0.29	1	0.0525	0.0656	{Klijn_CCL:Lung=1},SNAPC3->Oncogene{Bushman},chr9:15422702-15465951:+,small_nuclear_RNA_activating_complex_polypeptide_3,ADAMTSL1->ADAMTS_like_1,chr9:18473892-18910948:+	NCIH1437_LUNG	0.29	1	0.1181	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	MT-ND4--MT-ND4L	3	8	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	0	0.79	1	0.0394	0.105	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1437_LUNG	0.79	1	0.1444	FALSE	344	821	44	306	0	FALSE	ACH-000589
NCIH1437_LUNG	MT-ND6--MT-ND5	5	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0656	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH1437_LUNG	1	1	0.0656	FALSE	101	855	57	72	0	FALSE	ACH-000589
NCIH1437_LUNG	RP11-96H19.1--RP11-446N19.1	2	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0.1575	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1437_LUNG	1	1	0.1837	FALSE	467	2173	244	435	0	FALSE	ACH-000589
NCIH1437_LUNG	DENND5B-AS1--RP11-771K4.1	4	3	DENND5B-AS1	1197	chr12:31743053:+	RP11-771K4.1	9862	chr12:31516729:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0525	0.0394	DENND5B-AS1->DENND5B_antisense_RNA_1,chr12:31742857-31768600:+,RP11-771K4.1->chr12:31516415-31522235:-	NCIH1437_LUNG	1	1	0.0919	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	MT-ND6--MT-ND5	4	1	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1545	1	0	0.0525	0.0131	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH1437_LUNG	0	1	0.0656	FALSE	101	855	57	72	0	FALSE	ACH-000589
NCIH1437_LUNG	MT-TA--MT-TC	3	5	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.0656	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1437_LUNG	1	1	0.105	FALSE	462	80	0	856	0	FALSE	ACH-000589
NCIH1437_LUNG	RP11-96H19.1--RP11-446N19.1	1	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	5	0	0.74	1	0.0131	0.1706	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1437_LUNG	0.74	1	0.1837	FALSE	407	2205	196	549	0	FALSE	ACH-000589
NCIH1437_LUNG	RP4-565E6.1--HYDIN	2	7	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	12	1	0.43	0.0262	0.0919	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1437_LUNG	0.43	1	0.1181	TRUE	84	87	4	41	0	FALSE	ACH-000589
NCIH1437_LUNG	RP5-1033H22.2--RP11-183M13.1	3	3	RP5-1033H22.2	2387	chr1:94060006:+	RP11-183M13.1	13481	chr1:78717178:+	ONLY_REF_SPLICE	YES	11	8	0.35	0.43	0.0394	0.0394	RP5-1033H22.2->chr1:94057756-94071130:+,RP11-183M13.1->chr1:78695283-78835149:+	NCIH1437_LUNG	0.35	0.43	0.0788	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	MT-CO1--MT-ND1	3	2	MT-CO1	1585	chrM:6488:+	MT-ND1	5567	chrM:3331:+	INCL_NON_REF_SPLICE	YES	22838	0	0	1	0.0394	0.0262	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1437_LUNG	0	1	0.0656	FALSE	39	30	6	19	0	FALSE	ACH-000589
NCIH1437_LUNG	MT-ND5--MT-ATP8	3	2	MT-ND5	1785	chrM:13121:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2346	0	0	1	0.0394	0.0262	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1437_LUNG	0	1	0.0656	FALSE	43	37	8	105	0	FALSE	ACH-000589
NCIH1437_LUNG	FTL--MT-CO1	3	1	FTL	1134	chr19:49468691:+	MT-CO1	6232	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3290	26834	0	0	0.0394	0.0131	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1437_LUNG	0	0	0.0525	FALSE	0	7	0	14	0	FALSE	ACH-000589
NCIH1437_LUNG	FTL--MT-CO1	3	1	FTL	1122	chr19:49468679:+	MT-CO1	6221	chrM:6546:+	INCL_NON_REF_SPLICE	YES	722	26185	0.01	0	0.0394	0.0131	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1437_LUNG	0	0.01	0.0525	FALSE	0	7	0	14	0	FALSE	ACH-000589
NCIH1437_LUNG	SNAPC3--ADAMTSL1	3	1	SNAPC3	5811	chr9:15447242:+	ADAMTSL1	32910	chr9:18681810:+	ONLY_REF_SPLICE	YES	22	1	0.15	0.8	0.0394	0.0131	{Klijn_CCL:Lung=1},SNAPC3->Oncogene{Bushman},chr9:15422702-15465951:+,small_nuclear_RNA_activating_complex_polypeptide_3,ADAMTSL1->ADAMTS_like_1,chr9:18473892-18910948:+	NCIH1437_LUNG	0.15	0.8	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	ADAMTSL1--BNC2	2	4	ADAMTSL1	18438	chr9:18721663:+	BNC2	49232	chr9:16738483:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0.0525	ADAMTSL1->ADAMTS_like_1,chr9:18473892-18910948:+,BNC2->basonuclin_2,chr9:16409501-16870841:-	NCIH1437_LUNG	1	1	0.0787	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH1437_LUNG	1	1	0.0394	TRUE	0	42	0	133	42	FALSE	ACH-000589
NCIH1437_LUNG	CTD-2127H9.1--C9	3	0	CTD-2127H9.1	1162	chr5:38845770:-	C9	13660	chr5:39342298:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0394	0	CTD-2127H9.1->chr5:38736157-38845931:-,C9->chr5:39284364-39424970:-,complement_component_9	NCIH1437_LUNG	1	1	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	FTL--S100P	3	0	FTL	1153	chr19:49468710:+	S100P	6393	chr4:6695610:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,S100P->Oncogene{Bushman},S100_calcium_binding_protein_P,chr4:6694796-6698897:+	NCIH1437_LUNG	1	1	0.0394	TRUE	0	0	0	2	0	TRUE	ACH-000589
NCIH1437_LUNG	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1437_LUNG	1	1	0.0394	FALSE	462	80	0	856	0	FALSE	ACH-000589
NCIH1437_LUNG	NDUFB8--CIZ1	3	0	NDUFB8	1621	chr10:102289137:-	CIZ1	21414	chr9:130943078:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0394	0	NDUFB8->NADH:ubiquinone_oxidoreductase_subunit_B8,chr10:102265385-102289638:-,chr10:102267203-102289757:-,CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-	NCIH1437_LUNG	1	1	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	RP11-59N23.1--CMAS	3	0	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0394	0	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH1437_LUNG	1	1	0.0394	TRUE	21	102	17	28	0	FALSE	ACH-000589
NCIH1437_LUNG	TK1--CDC14A	2	4	TK1	6245	chr17:76171131:-	CDC14A	20479	chr1:100920961:+	ONLY_REF_SPLICE	YES	424	1	0.01	0.86	0.0262	0.0525	TK1->Oncogene{Bushman},chr17:76170160-76183314:-,thymidine_kinase_1,CDC14A->cell_division_cycle_14A,chr1:100810584-100985833:+	NCIH1437_LUNG	0.01	0.86	0.0787	FALSE	0	0	0	1	0	FALSE	ACH-000589
NCIH1437_LUNG	TK1--CDC14A	2	3	TK1	5766	chr17:76171610:-	CDC14A	20479	chr1:100920961:+	ONLY_REF_SPLICE	YES	365	1	0.01	0.83	0.0262	0.0394	TK1->Oncogene{Bushman},chr17:76170160-76183314:-,thymidine_kinase_1,CDC14A->cell_division_cycle_14A,chr1:100810584-100985833:+	NCIH1437_LUNG	0.01	0.83	0.0656	FALSE	0	0	0	1	0	FALSE	ACH-000589
NCIH1437_LUNG	ASPH--EIF4EBP1	2	2	ASPH	8053	chr8:62593527:-	EIF4EBP1	51290	chr8:37914599:+	ONLY_REF_SPLICE	YES	3354	1116	0	0	0.0262	0.0262	{Klijn_CCL:Lung=1},ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,EIF4EBP1->Oncogene{Bushman},chr8:37887859-37917883:+,eukaryotic_translation_initiation_factor_4E_binding_protein_1	NCIH1437_LUNG	0	0	0.0524	FALSE	0	0	0	1	0	FALSE	ACH-000589
NCIH1437_LUNG	RP5-1033H22.2--RP11-183M13.1	2	2	RP5-1033H22.2	2387	chr1:94060006:+	RP11-183M13.1	14865	chr1:78758164:+	ONLY_REF_SPLICE	YES	11	3	0.27	0.57	0.0262	0.0262	RP5-1033H22.2->chr1:94057756-94071130:+,RP11-183M13.1->chr1:78695283-78835149:+	NCIH1437_LUNG	0.27	0.57	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	ASPH--EIF4EBP1	1	5	ASPH	18348	chr8:62559309:-	EIF4EBP1	51290	chr8:37914599:+	ONLY_REF_SPLICE	NO	3074	1116	0	0.01	0.0131	0.0656	{Klijn_CCL:Lung=1},ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,EIF4EBP1->Oncogene{Bushman},chr8:37887859-37917883:+,eukaryotic_translation_initiation_factor_4E_binding_protein_1	NCIH1437_LUNG	0	0.01	0.0787	FALSE	0	0	0	1	0	FALSE	ACH-000589
NCIH1437_LUNG	CTD-2337A12.1--CAST	2	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	93	1	0.03	0.0262	0.0131	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH1437_LUNG	0.03	1	0.0393	TRUE	347	1186	183	220	0	FALSE	ACH-000589
NCIH1437_LUNG	FAIM2--PCNT	2	1	FAIM2	11184	chr12:50281169:-	PCNT	36791	chr21:47801609:+	ONLY_REF_SPLICE	YES	9	10	0.25	0.23	0.0262	0.0131	{Klijn_CCL:Lung=1},FAIM2->Fas_apoptotic_inhibitory_molecule_2,chr12:50260679-50298000:-,PCNT->chr21:47744036-47865682:+,pericentrin	NCIH1437_LUNG	0.23	0.25	0.0393	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	PLA2G4A--C1orf27	2	1	PLA2G4A	7648	chr1:186880521:+	C1orf27	36685	chr1:186386676:+	ONLY_REF_SPLICE	YES	177	64	0.02	0.04	0.0262	0.0131	PLA2G4A->Oncogene{Bushman},chr1:186798085-186958113:+,phospholipase_A2_group_IVA,C1orf27->chr1:186344890-186390510:+,chromosome_1_open_reading_frame_27	NCIH1437_LUNG	0.02	0.04	0.0393	TRUE	0	0	0	1	0	FALSE	ACH-000589
NCIH1437_LUNG	ARHGEF4--FAM168B	2	0	ARHGEF4	8732	chr2:131704208:+	FAM168B	27640	chr2:131829511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	LOCAL_INVERSION:+:-:[613],ARHGEF4->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_4,chr2:131594489-131804836:+,FAM168B->chr2:131805449-131851033:-,family_with_sequence_similarity_168_member_B	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	CDCA4--KLC1	2	0	CDCA4	1150	chr14:105487336:-	KLC1	9921	chr14:104120901:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	CDCA4->cell_division_cycle_associated_4,chr14:105475910-105487485:-,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	CHD4--KDM1A	2	0	CHD4	6573	chr12:6708939:-	KDM1A	40712	chr1:23397718:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	CHD4->ArcherDX_panel,FoundationOne_panel,chr12:6679249-6716642:-,chromodomain_helicase_DNA_binding_protein_4,KDM1A->chr1:23345941-23410182:+,lysine_demethylase_1A	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	CNPY2--GPI	2	0	CNPY2	2486	chr12:56708635:-	GPI	25792	chr19:34890112:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	CNPY2->canopy_FGF_signaling_regulator_2,chr12:56703626-56710120:-,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	CYP24A1--DAP3	2	0	CYP24A1	10936	chr20:52773708:-	DAP3	31914	chr1:155708400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	NCIH1437_LUNG	1	1	0.0262	TRUE	0	1	0	3	0	TRUE	ACH-000589
NCIH1437_LUNG	EIF2AK3--VRK2	2	0	EIF2AK3	3924	chr2:88913242:-	VRK2	41041	chr2:58316766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	EIF2AK3->chr2:88856259-88927094:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_3,VRK2->chr2:58134786-58387055:+,vaccinia_related_kinase_2	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	FAM96A--BUB1	2	0	FAM96A	3657	chr15:64380886:-	BUB1	33571	chr2:111399811:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	FAM96A->chr15:64364758-64386217:-,family_with_sequence_similarity_96_member_A,BUB1->BUB1_mitotic_checkpoint_serine/threonine_kinase,Oncogene{Bushman},chr2:111395275-111435691:-	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	KIAA0947--MARCH11	1	4	KIAA0947	19928	chr5:5466615:+	MARCH11	34648	chr5:16067902:-	ONLY_REF_SPLICE	YES	16	2	0.24	0.71	0.0131	0.0525	{Klijn_CCL:Lung=1},KIAA0947->chr5:5420777-5490347:+,MARCH11->chr5:16067248-16180871:-,membrane_associated_ring-CH-type_finger_11	NCIH1437_LUNG	0.24	0.71	0.0656	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	PPP1R16A--MAL2	2	0	PPP1R16A	1714	chr8:145704065:+	MAL2	18289	chr8:120233827:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,MAL2->chr8:120177273-120257913:+,mal,_T-cell_differentiation_protein_2_(gene/pseudogene)	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1437_LUNG	1	1	0.0262	TRUE	465	1949	224	605	0	FALSE	ACH-000589
NCIH1437_LUNG	UBAP2L--RFX5	2	0	UBAP2L	8814	chr1:154209612:+	RFX5	35165	chr1:151317664:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like,RFX5->Oncogene{Bushman},chr1:151313116-151319833:-,regulatory_factor_X5	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	UBE2Q2P1--PDE8A	2	0	UBE2Q2P1	5959	chr15:85098197:-	PDE8A	32705	chr15:85656608:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	UBE2Q2P1->chr15:85070012-85114447:-,ubiquitin_conjugating_enzyme_E2_Q2_pseudogene_1,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	ZNF410--PPP2R5E	2	0	ZNF410	1299	chr14:74353618:+	PPP2R5E	28048	chr14:63920603:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	ZNF410->chr14:74353320-74399214:+,zinc_finger_protein_410,PPP2R5E->chr14:63838075-64010092:-,protein_phosphatase_2_regulatory_subunit_B',_epsilon	NCIH1437_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0131	0.0394	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1437_LUNG	1	1	0.0525	FALSE	93	270	15	244	0	FALSE	ACH-000589
NCIH1437_LUNG	CATSPERB--FBLN5	1	1	CATSPERB	17967	chr14:92136158:-	FBLN5	46823	chr14:92361416:-	ONLY_REF_SPLICE	YES	36	1	0.05	0.67	0.0131	0.0131	LOCAL_REARRANGEMENT:-:[88705],CATSPERB->cation_channel_sperm_associated_auxiliary_subunit_beta,chr14:92047040-92247051:-,FBLN5->chr14:92335756-92414331:-,fibulin_5	NCIH1437_LUNG	0.05	0.67	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000589
NCIH1437_LUNG	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	132	1	0.01	0.0131	0.0131	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH1437_LUNG	0.01	1	0.0262	FALSE	15	36	8	26	0	FALSE	ACH-000589
NCIH1437_LUNG	CYP24A1--AKR1E2	1	1	CYP24A1	10936	chr20:52773708:-	AKR1E2	19818	chr10:4872867:+	ONLY_REF_SPLICE	YES	503	13	0	0.13	0.0131	0.0131	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	NCIH1437_LUNG	0	0.13	0.0262	FALSE	0	0	0	2	0	FALSE	ACH-000589
NCIH1437_LUNG	PHIP--HMGN3	1	1	PHIP	1789	chr6:79787165:-	HMGN3	45088	chr6:79924739:-	ONLY_REF_SPLICE	NO	13	380	0.13	0.01	0.0131	0.0131	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},PHIP->Oncogene{Bushman},chr6:79645584-79787953:-,pleckstrin_homology_domain_interacting_protein,HMGN3->chr6:79910962-79944406:-,high_mobility_group_nucleosomal_binding_domain_3	NCIH1437_LUNG	0.01	0.13	0.0262	FALSE	0	7	0	2	1	FALSE	ACH-000589
NCIH1437_LUNG	TMEM167B--PPA2	1	1	TMEM167B	2080	chr1:109633504:+	PPA2	24154	chr4:106320321:-	ONLY_REF_SPLICE	YES	66	414	0.03	0	0.0131	0.0131	TMEM167B->chr1:109632425-109639556:+,transmembrane_protein_167B,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	NCIH1437_LUNG	0	0.03	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000589
DAOY_CENTRAL_NERVOUS_SYSTEM	PCGF2--PIP4K2B	62	48	PCGF2	7190	chr17:36894606:-	PIP4K2B	16483	chr17:36943173:-	ONLY_REF_SPLICE	YES	155	93	0.42	0.54	0.7505	0.581	LOCAL_REARRANGEMENT:-:[15872],PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2,PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta	DAOY_CENTRAL_NERVOUS_SYSTEM	0.42	0.54	1.3315	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	55	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.6658	0.0121	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DAOY_CENTRAL_NERVOUS_SYSTEM	0.98	1	0.6779	FALSE	499	1288	110	792	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RPS6KB1--VMP1	26	52	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	57	869	0.58	0.08	0.3147	0.6294	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.08	0.58	0.9441	TRUE	0	9	0	11	6	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	34	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4116	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.4116	FALSE	499	1288	110	792	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	25	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.3026	0.3026	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DAOY_CENTRAL_NERVOUS_SYSTEM	0.98	1	0.6052	TRUE	508	994	45	981	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	PAWR--RP1-78O14.1	19	16	PAWR	15902	chr12:79986391:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	218	0	0.14	1	0.23	0.1937	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	DAOY_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.4237	FALSE	3	4	0	12	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	EP400--PGAM5	19	15	EP400	18317	chr12:132496179:+	PGAM5	55793	chr12:133291444:+	ONLY_REF_SPLICE	YES	65	4	0.34	0.89	0.23	0.1816	EP400->E1A_binding_protein_p400,Oncogene{Bushman},chr12:132434508-132565005:+,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.34	0.89	0.4116	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RPS6KB1--VMP1	5	56	RPS6KB1	1839	chr17:57971285:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	68	869	0.47	0.07	0.0605	0.6779	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.07	0.47	0.7384	TRUE	0	9	0	11	6	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	14	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	73	116	0.29	0.21	0.1695	0.1937	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DAOY_CENTRAL_NERVOUS_SYSTEM	0.21	0.29	0.3632	TRUE	267	562	48	632	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	16	2	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1937	0.0242	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DAOY_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.2179	FALSE	499	1288	110	792	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	15	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	459	3	0.03	0.84	0.1816	0.0121	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DAOY_CENTRAL_NERVOUS_SYSTEM	0.03	0.84	0.1937	TRUE	519	3926	326	965	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	NLN--ERBB2IP	11	15	NLN	3585	chr5:65054653:+	ERBB2IP	47163	chr5:65338905:+	ONLY_REF_SPLICE	YES	148	139	0.15	0.16	0.1332	0.1816	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[54750],NLN->chr5:65018023-65167553:+,neurolysin,ERBB2IP->chr5:65222303-65378377:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.15	0.16	0.3148	FALSE	0	0	0	1	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RPS6KB1--VMP1	1	52	RPS6KB1	1240	chr17:57970686:+	VMP1	38445	chr17:57911373:+	ONLY_REF_SPLICE	NO	57	356	0.48	0.13	0.0121	0.6294	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.13	0.48	0.6415	TRUE	0	3	0	1	3	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	ABR--SLC43A2	10	5	ABR	22312	chr17:970317:-	SLC43A2	55413	chr17:1489345:-	ONLY_REF_SPLICE	YES	236	80	0.06	0.16	0.121	0.0605	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,SLC43A2->chr17:1472561-1532180:-,solute_carrier_family_43_member_2	DAOY_CENTRAL_NERVOUS_SYSTEM	0.06	0.16	0.1815	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	11	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1332	0.0121	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.1453	FALSE	462	80	0	856	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	11	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1332	0.0121	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.1453	FALSE	292	1546	117	613	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	11	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1332	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.1332	FALSE	230	193	14	283	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	10	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.121	0.0363	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DAOY_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.1573	FALSE	499	1288	110	792	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	7	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	69	117	0.22	0.14	0.0847	0.1453	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DAOY_CENTRAL_NERVOUS_SYSTEM	0.14	0.22	0.23	TRUE	267	562	48	632	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	9	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1089	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.1089	FALSE	499	1288	110	792	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1089	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.1089	FALSE	462	80	0	856	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	SPAG7--B3GNTL1	8	2	SPAG7	1153	chr17:4871015:-	B3GNTL1	18665	chr17:80923622:-	ONLY_REF_SPLICE	YES	29	20	0.26	0.33	0.0968	0.0242	SPAG7->chr17:4862521-4871167:-,sperm_associated_antigen_7,B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-	DAOY_CENTRAL_NERVOUS_SYSTEM	0.26	0.33	0.121	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	EP400--PGAM5	6	9	EP400	17180	chr12:132491422:+	PGAM5	55793	chr12:133291444:+	ONLY_REF_SPLICE	YES	107	4	0.12	0.79	0.0726	0.1089	EP400->E1A_binding_protein_p400,Oncogene{Bushman},chr12:132434508-132565005:+,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.12	0.79	0.1815	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RP11-344E13.3--UBBP4	4	14	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.0484	0.1695	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	DAOY_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.2179	TRUE	23	13	0	54	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	7	1	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0847	0.0121	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DAOY_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.0968	FALSE	499	1288	110	792	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	NLGN1--PEX5L-AS1	6	5	NLGN1	8770	chr3:173322881:+	PEX5L-AS1	28909	chr3:179598676:+	ONLY_REF_SPLICE	YES	11	0	0.5	1	0.0726	0.0605	NLGN1->chr3:173114074-174004434:+,neuroligin_1,PEX5L-AS1->PEX5L_antisense_RNA_1,chr3:179593164-179599397:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.1331	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	5	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.0605	0.0968	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.81	1	0.1573	FALSE	407	2205	196	549	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	DMXL2--CYP19A1	5	7	DMXL2	46755	chr15:51745747:-	CYP19A1	66003	chr15:51535147:-	ONLY_REF_SPLICE	YES	100	5	0.11	0.71	0.0605	0.0847	DMXL2->Dmx_like_2,chr15:51739908-51915030:-,CYP19A1->Oncogene{Bushman},chr15:51500254-51630807:-,cytochrome_P450_family_19_subfamily_A_member_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.11	0.71	0.1452	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	EHHADH--PEX5L	4	9	EHHADH	8389	chr3:184944616:-	PEX5L	38929	chr3:179519820:-	ONLY_REF_SPLICE	YES	24	0	0.35	1	0.0484	0.1089	EHHADH->chr3:184908412-184999778:-,enoyl-CoA,_hydratase/3-hydroxyacyl_CoA_dehydrogenase,PEX5L->chr3:179512746-179754841:-,peroxisomal_biogenesis_factor_5-like	DAOY_CENTRAL_NERVOUS_SYSTEM	0.35	1	0.1573	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	5	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.5	1	0.0605	0.0605	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DAOY_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.121	FALSE	125	705	46	456	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	B3GNTL1--SERPINF1	4	8	B3GNTL1	14863	chr17:80914571:-	SERPINF1	27275	chr17:1670197:+	ONLY_REF_SPLICE	YES	15	0	0.44	1	0.0484	0.0968	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,SERPINF1->chr17:1665253-1680868:+,serpin_family_F_member_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.44	1	0.1452	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	CAAP1--SET	5	4	CAAP1	1392	chr9:26892411:-	SET	13371	chr9:131446059:+	ONLY_REF_SPLICE	YES	46	2	0.16	0.82	0.0605	0.0484	CAAP1->caspase_activity_and_apoptosis_inhibitor_1,chr9:26840683-26892802:-,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.16	0.82	0.1089	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	DOCK2--GABRP	5	4	DOCK2	53428	chr5:169484670:+	GABRP	73183	chr5:170215578:+	ONLY_REF_SPLICE	YES	18	0	0.33	1	0.0605	0.0484	DOCK2->chr5:169064251-169510386:+,dedicator_of_cytokinesis_2,GABRP->chr5:170190354-170241051:+,gamma-aminobutyric_acid_type_A_receptor_pi_subunit	DAOY_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.1089	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	4	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	4	1	0.73	0.0484	0.0847	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.73	1	0.1331	TRUE	458	1351	185	561	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.0484	0.0847	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.79	1	0.1331	FALSE	515	4851	409	746	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	5	2	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0605	0.0242	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DAOY_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.0847	FALSE	499	1288	110	792	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	5	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	15	1	0.32	0.0605	0.0242	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.32	1	0.0847	TRUE	465	1949	224	605	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	SH3GL3--EP300	5	2	SH3GL3	1351	chr15:84116330:+	EP300	22569	chr22:41513191:+	ONLY_REF_SPLICE	YES	0	51	1	0.12	0.0605	0.0242	SH3GL3->SH3_domain_containing_GRB2_like_3,chr15:84115980-84287495:+,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.12	1	0.0847	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	4	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.9	0.0484	0.0605	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.1089	FALSE	416	2512	207	587	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RP11-114H21.2--CTB-1I21.1	1	16	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	14	0	0.55	1	0.0121	0.1937	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.55	1	0.2058	TRUE	0	2	0	12	2	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	4	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	14340	30427	0	0	0.0484	0.0242	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DAOY_CENTRAL_NERVOUS_SYSTEM	0	0	0.0726	FALSE	183	104	9	328	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	EHHADH--PEX5L	2	9	EHHADH	7358	chr3:184947220:-	PEX5L	38929	chr3:179519820:-	ONLY_REF_SPLICE	YES	24	0	0.31	1	0.0242	0.1089	EHHADH->chr3:184908412-184999778:-,enoyl-CoA,_hydratase/3-hydroxyacyl_CoA_dehydrogenase,PEX5L->chr3:179512746-179754841:-,peroxisomal_biogenesis_factor_5-like	DAOY_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.1331	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	1	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0484	0.0121	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DAOY_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.0605	FALSE	499	1288	110	792	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	9	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	21	0	0.34	1	0.0242	0.1089	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DAOY_CENTRAL_NERVOUS_SYSTEM	0.34	1	0.1331	FALSE	164	806	69	479	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	3	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	174	0.6	0.03	0.0363	0.0363	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.03	0.6	0.0726	FALSE	16	356	14	466	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	ABR--SLC43A2	3	2	ABR	22312	chr17:970317:-	SLC43A2	57588	chr17:1486630:-	ONLY_REF_SPLICE	YES	236	76	0.02	0.06	0.0363	0.0242	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,SLC43A2->chr17:1472561-1532180:-,solute_carrier_family_43_member_2	DAOY_CENTRAL_NERVOUS_SYSTEM	0.02	0.06	0.0605	TRUE	0	0	0	1	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	DMXL2--CYP19A1	1	10	DMXL2	46755	chr15:51745747:-	CYP19A1	62618	chr15:51570359:-	ONLY_REF_SPLICE	NO	100	0	0.1	1	0.0121	0.121	DMXL2->Dmx_like_2,chr15:51739908-51915030:-,CYP19A1->Oncogene{Bushman},chr15:51500254-51630807:-,cytochrome_P450_family_19_subfamily_A_member_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.1	1	0.1331	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RPSAP52--HMGA2	3	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	2	416	0.71	0.01	0.0363	0.0242	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	DAOY_CENTRAL_NERVOUS_SYSTEM	0.01	0.71	0.0605	FALSE	0	59	0	125	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	ABR--SLC43A2	2	5	ABR	25182	chr17:960238:-	SLC43A2	55413	chr17:1489345:-	ONLY_REF_SPLICE	YES	417	80	0.02	0.08	0.0242	0.0605	ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,SLC43A2->chr17:1472561-1532180:-,solute_carrier_family_43_member_2	DAOY_CENTRAL_NERVOUS_SYSTEM	0.02	0.08	0.0847	TRUE	0	0	0	1	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	EP300--RP11-326A19.4	3	1	EP300	8747	chr22:41527637:+	RP11-326A19.4	43170	chr15:89625722:+	ONLY_REF_SPLICE	YES	78	0	0.05	1	0.0363	0.0121	EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+,RP11-326A19.4->chr15:89584454-89626050:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	MICAL2--USP47	3	1	MICAL2	11476	chr11:12183966:+	USP47	75467	chr11:11969492:+	ONLY_REF_SPLICE	YES	429	135	0.01	0.03	0.0363	0.0121	MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2,USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47	DAOY_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0484	FALSE	0	0	0	1	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	SPAG7--B3GNTL1	3	1	SPAG7	1153	chr17:4871015:-	B3GNTL1	19912	chr17:80919057:-	ONLY_REF_SPLICE	YES	29	16	0.12	0.2	0.0363	0.0121	SPAG7->chr17:4862521-4871167:-,sperm_associated_antigen_7,B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-	DAOY_CENTRAL_NERVOUS_SYSTEM	0.12	0.2	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	CEBPD--ACTN4	3	0	CEBPD	2639	chr8:48650010:-	ACTN4	16625	chr19:39207724:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	CEBPD->CCAAT/enhancer_binding_protein_delta,chr8:48649471-48651648:-,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	0	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0363	FALSE	231	217	16	283	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	0	MT-ND4	1534	chrM:11293:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0363	FALSE	231	217	16	283	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0363	FALSE	499	1288	110	792	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	PRR4--RP11-337A23.6	3	0	PRR4	4819	chr12:11187381:-	RP11-337A23.6	24489	chr9:26801884:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),RP11-337A23.6->chr9:26801731-26805860:+	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RERE--ENO1	3	0	RERE	1484	chr1:8877219:-	ENO1	42962	chr1:8934976:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:-:[43359],RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0363	TRUE	0	6	0	2	3	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.0121	0.0968	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.1089	FALSE	467	2173	244	435	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	DMXL2--CYP19A1	1	7	DMXL2	46755	chr15:51745747:-	CYP19A1	64645	chr15:51547958:-	ONLY_REF_SPLICE	NO	100	2	0.07	0.8	0.0121	0.0847	DMXL2->Dmx_like_2,chr15:51739908-51915030:-,CYP19A1->Oncogene{Bushman},chr15:51500254-51630807:-,cytochrome_P450_family_19_subfamily_A_member_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.07	0.8	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	DMXL2--CYP19A1	1	7	DMXL2	46755	chr15:51745747:-	CYP19A1	64698	chr15:51547905:-	ONLY_REF_SPLICE	YES	100	2	0.07	0.8	0.0121	0.0847	DMXL2->Dmx_like_2,chr15:51739908-51915030:-,CYP19A1->Oncogene{Bushman},chr15:51500254-51630807:-,cytochrome_P450_family_19_subfamily_A_member_1	DAOY_CENTRAL_NERVOUS_SYSTEM	0.07	0.8	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	NLGN1--PEX5L-AS1	1	5	NLGN1	9272	chr3:173323383:+	PEX5L-AS1	28909	chr3:179598676:+	ONLY_REF_SPLICE	YES	11	0	0.35	1	0.0121	0.0605	NLGN1->chr3:173114074-174004434:+,neuroligin_1,PEX5L-AS1->PEX5L_antisense_RNA_1,chr3:179593164-179599397:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.35	1	0.0726	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	ATP5J2--EEF1D	2	0	ATP5J2	1203	chr7:99063752:-	EEF1D	20407	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	ATP5J2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_F2,chr7:99046098-99063954:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	CAAP1--SET	1	4	CAAP1	1546	chr9:26892257:-	SET	13371	chr9:131446059:+	ONLY_REF_SPLICE	YES	36	2	0.12	0.71	0.0121	0.0484	CAAP1->caspase_activity_and_apoptosis_inhibitor_1,chr9:26840683-26892802:-,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.12	0.71	0.0605	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	CDH13--DNM3OS	2	0	CDH13	19777	chr16:83251102:+	DNM3OS	36657	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	1	0	7	1	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	FKBP14--TBC1D32	2	0	FKBP14	2525	chr7:30062281:-	TBC1D32	38727	chr6:121491673:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	FKBP14->FK506_binding_protein_14,chr7:30050203-30066300:-,TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	HINT1--TIA1	2	0	HINT1	3661	chr5:130498265:-	TIA1	18610	chr2:70443631:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	HINT1->chr5:130494720-130507428:-,histidine_triad_nucleotide_binding_protein_1,TIA1->TIA1_cytotoxic_granule-associated_RNA_binding_protein,chr2:70436576-70475792:-	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	IL13RA2--UNC45A	2	0	IL13RA2	11128	chrX:114239760:-	UNC45A	23391	chr15:91485667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	IL13RA2->chrX:114238538-114254540:-,interleukin_13_receptor_subunit_alpha_2,UNC45A->chr15:91473410-91497323:+,unc-45_myosin_chaperone_A	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	KHDRBS3--EIF3H	2	0	KHDRBS3	1498	chr8:136470197:+	EIF3H	32991	chr8:117671219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	KHDRBS3->KH_domain_containing,_RNA_binding,_signal_transduction_associated_3,chr8:136469700-136668965:+,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	LIN28B--HSF2	2	0	LIN28B	3424	chr6:105474357:+	HSF2	13629	chr6:122733518:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	LIN28B->chr6:105404923-105531207:+,lin-28_homolog_B,HSF2->chr6:122720691-122754264:+,heat_shock_transcription_factor_2	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	POLR2E--POLR2A	2	0	POLR2E	2696	chr19:1093903:-	POLR2A	18736	chr17:7403958:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	HGNC_GENEFAM,POLR2E->chr19:1086594-1095598:-,polymerase_(RNA)_II_subunit_E,POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	PRR4--RP11-337A23.6	2	0	PRR4	4819	chr12:11187381:-	RP11-337A23.6	25664	chr9:26805818:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),RP11-337A23.6->chr9:26801731-26805860:+	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RERE--ENO1	2	0	RERE	2669	chr1:8852463:-	ENO1	42962	chr1:8934976:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	LOCAL_REARRANGEMENT:-:[43359],RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	2	0	2	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	SLC35E3--NUP107	2	0	SLC35E3	1674	chr12:69140559:+	NUP107	24558	chr12:69103018:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[3101],SLC35E3->chr12:69139886-69187508:+,solute_carrier_family_35_member_E3,NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	SMIM14--LIMCH1	2	0	SMIM14	1352	chr4:39640359:-	LIMCH1	42690	chr4:41646517:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	SMIM14->chr4:39547950-39640710:-,small_integral_membrane_protein_14,LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	SSU72--ATAD3A	2	0	SSU72	1392	chr1:1509858:-	ATAD3A	26989	chr1:1469306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},LOCAL_INVERSION:-:+:[6986],SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-,ATAD3A->ATPase_family,_AAA_domain_containing_3A,chr1:1447531-1470067:+	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	1	0	0	2	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	WTAPP1--RUVBL1	2	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	9	252	6	66	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	EHHADH--PEX5L	1	3	EHHADH	6246	chr3:184953078:-	PEX5L	38929	chr3:179519820:-	ONLY_REF_SPLICE	YES	25	0	0.14	1	0.0121	0.0363	EHHADH->chr3:184908412-184999778:-,enoyl-CoA,_hydratase/3-hydroxyacyl_CoA_dehydrogenase,PEX5L->chr3:179512746-179754841:-,peroxisomal_biogenesis_factor_5-like	DAOY_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	1	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	NO	0	1	1	0.75	0.0121	0.0242	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	DAOY_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0363	TRUE	254	575	65	124	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RP11-634B7.4--TRIM58	1	2	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	16	0.75	0.16	0.0121	0.0242	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	DAOY_CENTRAL_NERVOUS_SYSTEM	0.16	0.75	0.0363	TRUE	158	633	76	73	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RP11-634B7.4--TRIM58	1	2	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	10447	chr1:248028007:+	ONLY_REF_SPLICE	YES	1	55	0.75	0.05	0.0121	0.0242	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	DAOY_CENTRAL_NERVOUS_SYSTEM	0.05	0.75	0.0363	TRUE	0	5	0	2	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	SERPINF1--ZNF385C	1	2	SERPINF1	6159	chr17:1674478:+	ZNF385C	14584	chr17:40215076:-	ONLY_REF_SPLICE	NO	3	0	0.5	1	0.0121	0.0242	SERPINF1->chr17:1665253-1680868:+,serpin_family_F_member_1,ZNF385C->chr17:40177594-40217383:-,zinc_finger_protein_385C	DAOY_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	21	2	0.09	0.5	0.0121	0.0121	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DAOY_CENTRAL_NERVOUS_SYSTEM	0.09	0.5	0.0242	FALSE	8	57	1	47	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0.0121	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	DAOY_CENTRAL_NERVOUS_SYSTEM	1	1	0.0242	TRUE	477	1352	189	275	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	TMEM2--ANXA1	1	1	TMEM2	3994	chr9:74383273:-	ANXA1	40311	chr9:75773438:+	ONLY_REF_SPLICE	YES	49	97	0.04	0.02	0.0121	0.0121	TMEM2->chr9:74298282-74431606:-,transmembrane_protein_2,ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.02	0.04	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	NO	66	0	0.03	1	0.0121	0.0121	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0242	FALSE	272	151	14	158	0	FALSE	ACH-000211
DAOY_CENTRAL_NERVOUS_SYSTEM	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	NO	66	0	0.03	1	0.0121	0.0121	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	DAOY_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0242	FALSE	28	14	1	23	0	FALSE	ACH-000211
SNU387_LIVER	C11orf30--RP11-18A15.1	65	19	C11orf30	3415	chr11:76163001:+	RP11-18A15.1	37522	chr9:26748214:+	ONLY_REF_SPLICE	YES	33	0	0.72	1	0.8404	0.2457	C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+,RP11-18A15.1->chr9:26746951-26786872:+	SNU387_LIVER	0.72	1	1.0861	TRUE	0	0	0	1	0	TRUE	ACH-000478
SNU387_LIVER	TIMM23B--LINC00843	36	9	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4655	0.1164	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU387_LIVER	1	1	0.5819	TRUE	508	994	45	981	0	FALSE	ACH-000478
SNU387_LIVER	OR51S1--TP53I11	38	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4913	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU387_LIVER	1	1	0.4913	TRUE	402	216	10	229	0	FALSE	ACH-000478
SNU387_LIVER	CD63--TGFBI	33	1	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	1889	7115	0.02	0	0.4267	0.0129	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	SNU387_LIVER	0	0.02	0.4396	TRUE	0	0	0	14	0	FALSE	ACH-000478
SNU387_LIVER	MT-TA--MT-TC	26	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3362	0.0129	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU387_LIVER	1	1	0.3491	FALSE	462	80	0	856	0	FALSE	ACH-000478
SNU387_LIVER	TIMM23--RP11-464F9.1	24	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	122	2	0.17	0.93	0.3103	0.0129	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU387_LIVER	0.17	0.93	0.3232	TRUE	519	3926	326	965	0	FALSE	ACH-000478
SNU387_LIVER	MT-ND6--MT-TE	19	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2457	0.0259	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU387_LIVER	1	1	0.2716	FALSE	499	1288	110	792	0	FALSE	ACH-000478
SNU387_LIVER	HSP90AB1--MT-RNR2	13	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1681	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU387_LIVER	1	1	0.1681	FALSE	13	9	0	364	0	FALSE	ACH-000478
SNU387_LIVER	MT-ND6--MT-TE	12	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1552	0.0259	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU387_LIVER	1	1	0.1811	FALSE	499	1288	110	792	0	FALSE	ACH-000478
SNU387_LIVER	MT-ND6--MT-TE	10	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1293	0.1034	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU387_LIVER	0.95	1	0.2327	FALSE	499	1288	110	792	0	FALSE	ACH-000478
SNU387_LIVER	C15orf57--CBX3	8	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	25	26	0.39	0.38	0.1034	0.1034	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU387_LIVER	0.38	0.39	0.2068	TRUE	267	562	48	632	0	FALSE	ACH-000478
SNU387_LIVER	COL8A1--CMSS1	9	3	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	416	223	0.03	0.05	0.1164	0.0388	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SNU387_LIVER	0.03	0.05	0.1552	FALSE	76	19	3	26	0	FALSE	ACH-000478
SNU387_LIVER	C15orf57--CBX3	7	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	25	25	0.4	0.4	0.0905	0.1293	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU387_LIVER	0.4	0.4	0.2198	TRUE	267	562	48	632	0	FALSE	ACH-000478
SNU387_LIVER	ZNF771--MYLPF	7	5	ZNF771	1898	chr16:30419515:+	MYLPF	14310	chr16:30386143:+	ONLY_REF_SPLICE	YES	6	0	0.67	1	0.0905	0.0646	LOCAL_REARRANGEMENT:+:[29306],ZNF771->chr16:30418618-30440920:+,zinc_finger_protein_771,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	SNU387_LIVER	0.67	1	0.1551	TRUE	0	0	0	1	0	TRUE	ACH-000478
SNU387_LIVER	RP11-353N4.6--SEC22B	7	4	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	41	485	0.21	0.02	0.0905	0.0517	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SNU387_LIVER	0.02	0.21	0.1422	TRUE	49	42	7	43	0	FALSE	ACH-000478
SNU387_LIVER	FTH1--ACTB	7	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	753	0	0.01	1	0.0905	0.0129	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU387_LIVER	0.01	1	0.1034	TRUE	1	0	0	97	0	FALSE	ACH-000478
SNU387_LIVER	MT-ND6--MT-TE	4	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0.1422	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU387_LIVER	1	1	0.1939	FALSE	499	1288	110	792	0	FALSE	ACH-000478
SNU387_LIVER	COL1A2--PTMA	6	2	COL1A2	14602	chr7:94041987:+	PTMA	37657	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	1739	8	0	0.5	0.0776	0.0259	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SNU387_LIVER	0	0.5	0.1035	TRUE	0	0	0	9	0	FALSE	ACH-000478
SNU387_LIVER	FN1--S100A6	5	2	FN1	12522	chr2:216285405:-	S100A6	55189	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	5035	6	0	0.54	0.0646	0.0259	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	SNU387_LIVER	0	0.54	0.0905	FALSE	0	0	0	7	0	FALSE	ACH-000478
SNU387_LIVER	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0646	0.0259	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU387_LIVER	0.88	1	0.0905	FALSE	515	4851	409	746	0	FALSE	ACH-000478
SNU387_LIVER	SERPINE1--MT-ND4	5	1	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	3754	8343	0	0	0.0646	0.0129	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SNU387_LIVER	0	0	0.0775	FALSE	1	0	0	29	0	FALSE	ACH-000478
SNU387_LIVER	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU387_LIVER	1	1	0.0517	FALSE	462	80	0	856	0	FALSE	ACH-000478
SNU387_LIVER	MT-TA--MT-TC	3	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.0259	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU387_LIVER	1	1	0.0647	FALSE	462	80	0	856	0	FALSE	ACH-000478
SNU387_LIVER	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.0259	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU387_LIVER	1	1	0.0647	FALSE	462	80	0	856	0	FALSE	ACH-000478
SNU387_LIVER	C11orf30--RP11-18A15.1	3	1	C11orf30	3415	chr11:76163001:+	RP11-18A15.1	38619	chr9:26786784:+	ONLY_REF_SPLICE	YES	33	0	0.11	1	0.0388	0.0129	C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+,RP11-18A15.1->chr9:26746951-26786872:+	SNU387_LIVER	0.11	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000478
SNU387_LIVER	NDUFA4--PHF14	3	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	448	30	0.01	0.12	0.0388	0.0129	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SNU387_LIVER	0.01	0.12	0.0517	FALSE	19	32	3	60	0	FALSE	ACH-000478
SNU387_LIVER	ZNF771--MYLPF	2	5	ZNF771	1898	chr16:30419515:+	MYLPF	13126	chr16:30384199:+	ONLY_REF_SPLICE	YES	6	0	0.54	1	0.0259	0.0646	LOCAL_REARRANGEMENT:+:[29306],ZNF771->chr16:30418618-30440920:+,zinc_finger_protein_771,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	SNU387_LIVER	0.54	1	0.0905	TRUE	0	0	0	1	0	TRUE	ACH-000478
SNU387_LIVER	HSP90AB1--MT-RNR2	3	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU387_LIVER	1	1	0.0388	FALSE	13	9	0	364	0	FALSE	ACH-000478
SNU387_LIVER	RP11-353N4.6--SEC22B	2	4	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	39	485	0.13	0.01	0.0259	0.0517	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SNU387_LIVER	0.01	0.13	0.0776	FALSE	49	42	7	43	0	FALSE	ACH-000478
SNU387_LIVER	COL8A1--CMSS1	2	3	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	491	223	0.01	0.02	0.0259	0.0388	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SNU387_LIVER	0.01	0.02	0.0647	FALSE	38	10	2	29	0	FALSE	ACH-000478
SNU387_LIVER	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.8	1	0.0259	0.0259	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU387_LIVER	0.8	1	0.0518	FALSE	407	2205	196	549	0	FALSE	ACH-000478
SNU387_LIVER	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	15	0.5	0.17	0.0259	0.0129	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU387_LIVER	0.17	0.5	0.0388	FALSE	16	356	14	466	0	FALSE	ACH-000478
SNU387_LIVER	RP11-353N4.6--SEC22B	1	5	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	41	549	0.13	0.01	0.0129	0.0646	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SNU387_LIVER	0.01	0.13	0.0775	FALSE	33	36	9	21	0	FALSE	ACH-000478
SNU387_LIVER	ARHGEF7--ARGLU1	2	0	ARHGEF7	4362	chr13:111806338:+	ARGLU1	44466	chr13:107212005:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,ARGLU1->arginine_and_glutamate_rich_1,chr13:107194021-107220512:-	SNU387_LIVER	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000478
SNU387_LIVER	RP11-358H9.1--RP11-400N13.1	2	0	RP11-358H9.1	2827	chr1:222626082:-	RP11-400N13.1	9106	chr1:222262907:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	NEIGHBORS[65306],RP11-358H9.1->chr1:222626082-222628047:-,RP11-400N13.1->chr1:222262511-222560776:-	SNU387_LIVER	1	1	0.0259	FALSE	0	22	0	9	0	FALSE	ACH-000478
SNU387_LIVER	VDAC1--CTD-2410N18.5	2	0	VDAC1	1487	chr5:133340338:-	CTD-2410N18.5	16152	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	VDAC1->chr5:133307606-133340824:-,voltage_dependent_anion_channel_1,CTD-2410N18.5->chr5:133502861-133561762:-	SNU387_LIVER	1	1	0.0259	TRUE	0	0	0	6	0	TRUE	ACH-000478
SNU387_LIVER	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0.0388	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU387_LIVER	1	1	0.0517	FALSE	192	492	57	212	0	FALSE	ACH-000478
SNU387_LIVER	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0129	0.0388	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU387_LIVER	1	1	0.0517	FALSE	467	2173	244	435	0	FALSE	ACH-000478
SNU387_LIVER	COL8A1--CMSS1	1	2	COL8A1	12080	chr3:99463865:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	573	223	0.01	0.01	0.0129	0.0259	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SNU387_LIVER	0.01	0.01	0.0388	FALSE	4	4	0	17	0	FALSE	ACH-000478
SNU387_LIVER	VTI1A--RP11-57H14.3	1	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	20	0	0.13	1	0.0129	0.0259	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SNU387_LIVER	0.13	1	0.0388	FALSE	272	151	14	158	0	FALSE	ACH-000478
SNU387_LIVER	AGPAT4--MAP3K4	1	1	AGPAT4	4232	chr6:161586609:-	MAP3K4	27860	chr6:161488231:+	ONLY_REF_SPLICE	NO	42	30	0.05	0.06	0.0129	0.0129	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Thyroid=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[12594],AGPAT4->1-acylglycerol-3-phosphate_O-acyltransferase_4,chr6:161551011-161695093:-,MAP3K4->chr6:161412759-161538417:+,mitogen-activated_protein_kinase_kinase_kinase_4	SNU387_LIVER	0.05	0.06	0.0258	TRUE	0	0	0	1	0	FALSE	ACH-000478
SNU387_LIVER	IL1RAP--CCDC50	1	1	IL1RAP	19394	chr3:190347287:+	CCDC50	34471	chr3:191074877:+	ONLY_REF_SPLICE	YES	87	57	0.02	0.03	0.0129	0.0129	IL1RAP->chr3:190231840-190375843:+,interleukin_1_receptor_accessory_protein,CCDC50->chr3:191046866-191116459:+,coiled-coil_domain_containing_50	SNU387_LIVER	0.02	0.03	0.0258	TRUE	0	0	0	2	0	FALSE	ACH-000478
SNU387_LIVER	PROSC--CHMP1A	1	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	54	168	0.04	0.01	0.0129	0.0129	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SNU387_LIVER	0.01	0.04	0.0258	FALSE	13	55	3	29	0	FALSE	ACH-000478
SNU387_LIVER	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	3	13	0.4	0.13	0.0129	0.0129	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU387_LIVER	0.13	0.4	0.0258	FALSE	0	23	1	67	0	FALSE	ACH-000478
SNU387_LIVER	RP11-1L12.3--SLC5A12	1	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0129	0.0129	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	SNU387_LIVER	0.4	1	0.0258	TRUE	3	101	0	60	0	FALSE	ACH-000478
CCK81_LARGE_INTESTINE	TIMM23B--LINC00843	84	37	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.031	0.4541	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CCK81_LARGE_INTESTINE	0.99	1	1.4851	TRUE	508	994	45	981	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	DMTN--NPM2	57	72	DMTN	15669	chr8:21937972:+	NPM2	23406	chr8:21890634:+	INCL_NON_REF_SPLICE	YES	120	21	0.52	0.86	0.6996	0.8837	LOCAL_REARRANGEMENT:+:[12098],DMTN->chr8:21906506-21940038:+,dematin_actin_binding_protein,NPM2->chr8:21881636-21894408:+,nucleophosmin/nucleoplasmin_2	CCK81_LARGE_INTESTINE	0.52	0.86	1.5833	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	TIMM23--RP11-464F9.1	55	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	443	10	0.12	0.86	0.6751	0.0491	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CCK81_LARGE_INTESTINE	0.12	0.86	0.7242	TRUE	519	3926	326	965	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MT-TA--MT-TC	43	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5278	0.0859	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CCK81_LARGE_INTESTINE	1	1	0.6137	FALSE	462	80	0	856	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	ZNF654--HMGB2	34	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4173	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CCK81_LARGE_INTESTINE	1	1	0.4173	TRUE	0	0	0	518	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	RP11-680G10.1--GSE1	18	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	58	1	0.29	0.2209	0.0736	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CCK81_LARGE_INTESTINE	0.29	1	0.2945	TRUE	465	1949	224	605	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	DMTN--NPM2	2	68	DMTN	15668	chr8:21937971:+	NPM2	23413	chr8:21890641:+	ONLY_REF_SPLICE	YES	119	20	0.37	0.78	0.0245	0.8346	LOCAL_REARRANGEMENT:+:[12098],DMTN->chr8:21906506-21940038:+,dematin_actin_binding_protein,NPM2->chr8:21881636-21894408:+,nucleophosmin/nucleoplasmin_2	CCK81_LARGE_INTESTINE	0.37	0.78	0.8591	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	NUMA1--RP11-807H22.7	14	11	NUMA1	3816	chr11:71780888:-	RP11-807H22.7	44213	chr11:71874423:-	ONLY_REF_SPLICE	YES	160	1	0.14	0.96	0.1718	0.135	LOCAL_REARRANGEMENT:-:[82627],NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,RP11-807H22.7->chr11:71874366-71920285:-	CCK81_LARGE_INTESTINE	0.14	0.96	0.3068	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	MTATP6P1--MTND2P28	13	0	MTATP6P1	1115	chr1:569190:+	MTND2P28	5357	chr1:565695:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1596	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	CCK81_LARGE_INTESTINE	1	1	0.1596	TRUE	20	3	0	12	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	NPM1P24--SET	12	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	40	2261	0.25	0.01	0.1473	0.0123	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CCK81_LARGE_INTESTINE	0.01	0.25	0.1596	TRUE	0	0	0	434	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	DAZAP1--ELANE	9	7	DAZAP1	6482	chr19:1418730:+	ELANE	22854	chr19:852209:+	ONLY_REF_SPLICE	YES	793	0	0.02	1	0.1105	0.0859	DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+,ELANE->chr19:851014-856242:+,elastase,_neutrophil_expressed	CCK81_LARGE_INTESTINE	0.02	1	0.1964	TRUE	0	0	0	1	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	SLC12A2--EIF5A	10	0	SLC12A2	1511	chr5:127419968:+	EIF5A	38672	chr17:7211006:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1227	0	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A	CCK81_LARGE_INTESTINE	1	1	0.1227	TRUE	0	0	0	2	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	DMTN--NPM2	1	35	DMTN	14387	chr8:21931346:+	NPM2	23413	chr8:21890641:+	ONLY_REF_SPLICE	YES	133	20	0.21	0.64	0.0123	0.4296	LOCAL_REARRANGEMENT:+:[12098],DMTN->chr8:21906506-21940038:+,dematin_actin_binding_protein,NPM2->chr8:21881636-21894408:+,nucleophosmin/nucleoplasmin_2	CCK81_LARGE_INTESTINE	0.21	0.64	0.4419	TRUE	0	1	0	1	1	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1105	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CCK81_LARGE_INTESTINE	1	1	0.1105	FALSE	462	80	0	856	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MT-TA--MT-TC	7	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0859	0.0982	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CCK81_LARGE_INTESTINE	1	1	0.1841	FALSE	462	80	0	856	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MT-ND6--MT-TE	7	7	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0859	0.0859	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CCK81_LARGE_INTESTINE	1	1	0.1718	FALSE	499	1288	110	792	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MT-ND6--MT-TE	4	14	MT-ND6	1194	chrM:14480:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.0491	0.1718	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CCK81_LARGE_INTESTINE	0.86	1	0.2209	FALSE	499	1288	110	792	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MT-ND3--MT-ATP8	7	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0859	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CCK81_LARGE_INTESTINE	1	1	0.0859	FALSE	351	233	23	137	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MAP2K4--PAGE5	4	10	MAP2K4	5591	chr17:11973166:+	PAGE5	23735	chrX:55247808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0491	0.1227	MAP2K4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:11924141-12047147:+,mitogen-activated_protein_kinase_kinase_4,PAGE5->PAGE_family_member_5,chrX:55246788-55250541:+	CCK81_LARGE_INTESTINE	1	1	0.1718	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	MT-TA--MT-TC	5	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0614	0.0736	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CCK81_LARGE_INTESTINE	1	1	0.135	FALSE	462	80	0	856	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MT-ND6--MT-TE	6	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0736	0.0123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CCK81_LARGE_INTESTINE	1	1	0.0859	FALSE	499	1288	110	792	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	NUMA1--RP11-807H22.7	1	21	NUMA1	5329	chr11:71779151:-	RP11-807H22.7	42989	chr11:71909780:-	ONLY_REF_SPLICE	NO	178	0	0.11	1	0.0123	0.2578	LOCAL_REARRANGEMENT:-:[82627],NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,RP11-807H22.7->chr11:71874366-71920285:-	CCK81_LARGE_INTESTINE	0.11	1	0.2701	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	SAMD5--SASH1	6	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0736	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	CCK81_LARGE_INTESTINE	1	1	0.0736	TRUE	53	396	64	110	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MTATP6P1--MTND2P28	5	2	MTATP6P1	1112	chr1:569187:+	MTND2P28	4908	chr1:565246:+	INCL_NON_REF_SPLICE	YES	1200	7414	0.01	0	0.0614	0.0245	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	CCK81_LARGE_INTESTINE	0	0.01	0.0859	FALSE	20	3	0	12	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MTATP6P1--MTND2P28	3	10	MTATP6P1	1516	chr1:569591:+	MTND2P28	5380	chr1:565718:+	INCL_NON_REF_SPLICE	YES	1313	2550	0.01	0.01	0.0368	0.1227	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	CCK81_LARGE_INTESTINE	0.01	0.01	0.1595	TRUE	20	3	0	12	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MT-ND3--MT-ATP8	5	1	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	95	8	0.06	0.43	0.0614	0.0123	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CCK81_LARGE_INTESTINE	0.06	0.43	0.0737	FALSE	351	233	23	137	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MT-ND3--MT-ATP8	5	1	MT-ND3	1255	chrM:10313:+	MT-ATP8	4443	chrM:8462:+	INCL_NON_REF_SPLICE	NO	26	3	0.19	0.67	0.0614	0.0123	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CCK81_LARGE_INTESTINE	0.19	0.67	0.0737	FALSE	351	233	23	137	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MT-ND6--MT-TE	5	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0614	0.0123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CCK81_LARGE_INTESTINE	1	1	0.0737	FALSE	499	1288	110	792	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	RP11-120D5.1--MID1	4	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	62	0.6	0.13	0.0491	0.0614	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CCK81_LARGE_INTESTINE	0.13	0.6	0.1105	FALSE	16	356	14	466	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MAP2K4--PAGE5	3	8	MAP2K4	4398	chr17:11958308:+	PAGE5	23735	chrX:55247808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0368	0.0982	MAP2K4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:11924141-12047147:+,mitogen-activated_protein_kinase_kinase_4,PAGE5->PAGE_family_member_5,chrX:55246788-55250541:+	CCK81_LARGE_INTESTINE	1	1	0.135	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	NPM1P24--SET	4	2	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	40	2080	0.13	0	0.0491	0.0245	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CCK81_LARGE_INTESTINE	0	0.13	0.0736	FALSE	0	0	0	434	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0491	0.0245	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CCK81_LARGE_INTESTINE	1	1	0.0736	FALSE	515	4851	409	746	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	RP11-319G9.5--WWOX	4	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	47	1	0.1	0.0491	0.0123	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	CCK81_LARGE_INTESTINE	0.1	1	0.0614	FALSE	154	425	28	76	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MTATP6P1--MTND2P28	3	4	MTATP6P1	1149	chr1:569224:+	MTND2P28	5404	chr1:565742:+	INCL_NON_REF_SPLICE	YES	2692	2103	0	0	0.0368	0.0491	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	CCK81_LARGE_INTESTINE	0	0	0.0859	FALSE	20	3	0	12	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	NUMA1--RP11-807H22.7	1	12	NUMA1	5329	chr11:71779151:-	RP11-807H22.7	44213	chr11:71874423:-	ONLY_REF_SPLICE	YES	178	1	0.07	0.93	0.0123	0.1473	LOCAL_REARRANGEMENT:-:[82627],NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,RP11-807H22.7->chr11:71874366-71920285:-	CCK81_LARGE_INTESTINE	0.07	0.93	0.1596	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	RP11-680G10.1--GSE1	2	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	18	1	0.36	0.0245	0.0982	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CCK81_LARGE_INTESTINE	0.36	1	0.1227	TRUE	458	1351	185	561	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	FTH1--ACTB	3	3	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	8302	5	0	0.55	0.0368	0.0368	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	CCK81_LARGE_INTESTINE	0	0.55	0.0736	FALSE	1	0	0	97	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MTATP6P1--MTND2P28	3	3	MTATP6P1	1140	chr1:569215:+	MTND2P28	5395	chr1:565733:+	INCL_NON_REF_SPLICE	YES	2335	2324	0	0	0.0368	0.0368	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	CCK81_LARGE_INTESTINE	0	0	0.0736	FALSE	20	3	0	12	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	NPM1P24--SET	3	2	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	40	2218	0.11	0	0.0368	0.0245	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CCK81_LARGE_INTESTINE	0	0.11	0.0613	FALSE	0	0	0	434	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MT-ND3--MT-ATP8	3	1	MT-ND3	1255	chrM:10313:+	MT-ATP8	4437	chrM:8456:+	INCL_NON_REF_SPLICE	NO	26	0	0.13	1	0.0368	0.0123	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CCK81_LARGE_INTESTINE	0.13	1	0.0491	FALSE	351	233	23	137	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MTATP6P1--MTND2P28	3	0	MTATP6P1	1098	chr1:569173:+	MTND2P28	5380	chr1:565718:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	CCK81_LARGE_INTESTINE	1	1	0.0368	TRUE	20	3	0	12	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MTATP6P1--MTND2P28	3	0	MTATP6P1	1086	chr1:569161:+	MTND2P28	4682	chr1:565020:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	CCK81_LARGE_INTESTINE	1	1	0.0368	TRUE	20	3	0	12	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	SLC12A2--EIF5A	3	0	SLC12A2	1749	chr5:127420206:+	EIF5A	38654	chr17:7210988:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A	CCK81_LARGE_INTESTINE	1	1	0.0368	TRUE	0	0	0	2	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0.0245	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CCK81_LARGE_INTESTINE	1	1	0.049	FALSE	467	2173	244	435	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	DAZAP1--ELANE	1	5	DAZAP1	6482	chr19:1418730:+	ELANE	23521	chr19:852876:+	ONLY_REF_SPLICE	YES	793	5	0.01	0.55	0.0123	0.0614	DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+,ELANE->chr19:851014-856242:+,elastase,_neutrophil_expressed	CCK81_LARGE_INTESTINE	0.01	0.55	0.0737	FALSE	0	0	0	1	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	RP11-120D5.1--MID1	1	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	NO	6	39	0.5	0.13	0.0123	0.0614	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CCK81_LARGE_INTESTINE	0.13	0.5	0.0737	FALSE	0	23	1	67	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	SCARB1--UBC	2	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	405	67	0.01	0.04	0.0245	0.0123	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	CCK81_LARGE_INTESTINE	0.01	0.04	0.0368	FALSE	55	66	6	101	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	C21orf33--ZBTB7A	2	0	C21orf33	5159	chr21:45560224:+	ZBTB7A	14811	chr19:4055245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	C21orf33->chr21:45553487-45565605:+,chromosome_21_open_reading_frame_33,ZBTB7A->chr19:4044362-4066943:-,zinc_finger_and_BTB_domain_containing_7A	CCK81_LARGE_INTESTINE	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	CCK81_LARGE_INTESTINE	1	1	0.0245	TRUE	2	8	0	24	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	ENTHD1--ANO3	2	0	ENTHD1	8024	chr22:40161228:-	ANO3	34671	chr11:26619912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	ENTHD1->ENTH_domain_containing_1,chr22:40139049-40289868:-,ANO3->anoctamin_3,chr11:26210829-26684835:+	CCK81_LARGE_INTESTINE	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	RP11-120D5.1--MID1	1	4	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	62	0.42	0.07	0.0123	0.0491	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CCK81_LARGE_INTESTINE	0.07	0.42	0.0614	FALSE	0	48	1	163	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	SDCBP2-AS1--ARIH1	2	0	SDCBP2-AS1	1125	chr20:1306173:+	ARIH1	15748	chr15:72789132:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	SDCBP2-AS1->SDCBP2_antisense_RNA_1,chr20:1306049-1359378:+,ARIH1->ariadne_RBR_E3_ubiquitin_protein_ligase_1,chr15:72766667-72879692:+	CCK81_LARGE_INTESTINE	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	WTAPP1--RUVBL1	2	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	CCK81_LARGE_INTESTINE	1	1	0.0245	TRUE	9	252	6	66	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	RP11-680G10.1--GSE1	1	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	106	1	0.04	0.0123	0.0368	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CCK81_LARGE_INTESTINE	0.04	1	0.0491	TRUE	64	13	3	59	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0.0368	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CCK81_LARGE_INTESTINE	1	1	0.0491	FALSE	407	2205	196	549	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0123	0.0368	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CCK81_LARGE_INTESTINE	1	1	0.0491	FALSE	192	492	57	212	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	RP11-476K15.1--CTD-2015H3.2	1	2	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0123	0.0245	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	CCK81_LARGE_INTESTINE	0.43	1	0.0368	FALSE	0	46	0	73	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	AC097721.2--SPOPL	1	1	AC097721.2	1944	chr2:139258325:-	SPOPL	12071	chr2:139307727:+	ONLY_REF_SPLICE	YES	0	54	1	0.04	0.0123	0.0123	LOCAL_INVERSION:-:+:[103],AC097721.2->chr2:139175854-139259268:-,SPOPL->chr2:139259371-139331117:+,speckle_type_BTB/POZ_protein_like	CCK81_LARGE_INTESTINE	0.04	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	ADAP1--C7orf50	1	1	ADAP1	9672	chr7:959605:-	C7orf50	29696	chr7:1049779:-	ONLY_REF_SPLICE	YES	308	332	0.01	0.01	0.0123	0.0123	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_REARRANGEMENT:-:[41579],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	CCK81_LARGE_INTESTINE	0.01	0.01	0.0246	FALSE	0	6	0	10	1	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	ATXN7--THOC7	1	1	ATXN7	3640	chr3:63884173:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	NO	1	15	0.67	0.12	0.0123	0.0123	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	CCK81_LARGE_INTESTINE	0.12	0.67	0.0246	TRUE	0	2	0	5	2	TRUE	ACH-000963
CCK81_LARGE_INTESTINE	DTL--PPP2R5A	1	1	DTL	1366	chr1:212209284:+	PPP2R5A	28627	chr1:212502477:+	ONLY_REF_SPLICE	YES	189	146	0.01	0.01	0.0123	0.0123	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	CCK81_LARGE_INTESTINE	0.01	0.01	0.0246	FALSE	0	0	0	3	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	GGACT--PCCA	1	1	GGACT	3102	chr13:101236079:-	PCCA	40151	chr13:101179929:+	ONLY_REF_SPLICE	YES	105	89	0.02	0.02	0.0123	0.0123	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	CCK81_LARGE_INTESTINE	0.02	0.02	0.0246	TRUE	7	15	0	10	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	MTHFD1L--HMGCR	1	1	MTHFD1L	29537	chr6:151336829:+	HMGCR	50483	chr5:74647249:+	ONLY_REF_SPLICE	YES	186	697	0.01	0	0.0123	0.0123	MTHFD1L->chr6:151186685-151423023:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_1-like,HMGCR->3-hydroxy-3-methylglutaryl-CoA_reductase,Oncogene{Bushman},chr5:74632154-74657929:+	CCK81_LARGE_INTESTINE	0	0.01	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	NDC1--MRPS16	1	1	NDC1	12822	chr1:54266366:-	MRPS16	25900	chr10:75011781:-	ONLY_REF_SPLICE	YES	345	998	0.01	0	0.0123	0.0123	NDC1->NDC1_transmembrane_nucleoporin,chr1:54231133-54304533:-,MRPS16->chr10:75006510-75012451:-,mitochondrial_ribosomal_protein_S16	CCK81_LARGE_INTESTINE	0	0.01	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	SUMO1--NOP58	1	1	SUMO1	1169	chr2:203103163:-	NOP58	14982	chr2:203139836:+	ONLY_REF_SPLICE	NO	329	1202	0.01	0	0.0123	0.0123	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_INVERSION:-:+:[27108],SUMO1->chr2:203070903-203103331:-,small_ubiquitin-like_modifier_1,NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+	CCK81_LARGE_INTESTINE	0	0.01	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000963
CCK81_LARGE_INTESTINE	ZNF736--ACN9	1	1	ZNF736	8361	chr7:63797360:+	ACN9	24064	chr7:96810324:+	ONLY_REF_SPLICE	YES	36	800	0.05	0	0.0123	0.0123	ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,ACN9->chr7:96745902-96811075:+	CCK81_LARGE_INTESTINE	0	0.05	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000963
BFTC909_KIDNEY	COL1A1--FN1	714	47	COL1A1	12966	chr17:48266809:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	2115	8338	0.26	0.08	6.3855	0.4203	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0.08	0.26	6.8058	TRUE	0	0	0	17	0	TRUE	ACH-000792
BFTC909_KIDNEY	COL1A1--FN1	189	3	COL1A1	5208	chr17:48274567:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	NO	2062	8338	0.09	0.02	1.6903	0.0268	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0.02	0.09	1.7171	TRUE	0	0	0	9	0	FALSE	ACH-000792
BFTC909_KIDNEY	TIMM23B--LINC00843	127	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.98	1.1358	0.1073	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BFTC909_KIDNEY	0.98	1	1.2431	TRUE	508	994	45	981	0	FALSE	ACH-000792
BFTC909_KIDNEY	COL6A3--MT-RNR2	99	0	COL6A3	41635	chr2:238249354:-	MT-RNR2	57522	chrM:1699:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8854	0	COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BFTC909_KIDNEY	1	1	0.8854	FALSE	0	0	0	6	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-TA--MT-TN	73	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6529	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC909_KIDNEY	1	1	0.6529	FALSE	369	2501	205	193	0	FALSE	ACH-000792
BFTC909_KIDNEY	TIMM23--RP11-464F9.1	71	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.635	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BFTC909_KIDNEY	1	1	0.635	TRUE	519	3926	326	965	0	FALSE	ACH-000792
BFTC909_KIDNEY	VIM-AS1--FN1	30	7	VIM-AS1	1257	chr10:17271728:-	FN1	9932	chr2:216300758:-	INCL_NON_REF_SPLICE	NO	4876	0	0.01	1	0.2683	0.0626	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0.01	1	0.3309	FALSE	0	0	0	2	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-ND6--MT-TE	27	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2415	0.0358	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC909_KIDNEY	1	1	0.2773	FALSE	499	1288	110	792	0	FALSE	ACH-000792
BFTC909_KIDNEY	HSP90AB1--MT-RNR2	27	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1772	0	0.02	1	0.2415	0.0179	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BFTC909_KIDNEY	0.02	1	0.2594	FALSE	13	9	0	364	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-TA--MT-TC	23	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2057	0.0179	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BFTC909_KIDNEY	1	1	0.2236	FALSE	462	80	0	856	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-TA--MT-TN	10	36	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0894	0.322	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC909_KIDNEY	1	1	0.4114	FALSE	369	2501	205	193	0	FALSE	ACH-000792
BFTC909_KIDNEY	RP11-120D5.1--MID1	16	7	RP11-120D5.1	4510	chrX:11074056:-	MID1	23013	chrX:10491227:-	ONLY_REF_SPLICE	YES	0	15	1	0.61	0.1431	0.0626	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	BFTC909_KIDNEY	0.61	1	0.2057	FALSE	0	3	0	6	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-TA--MT-TN	12	21	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1073	0.1878	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC909_KIDNEY	1	1	0.2951	FALSE	369	2501	205	193	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-ND6--MT-TE	16	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1431	0.0358	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC909_KIDNEY	1	1	0.1789	FALSE	499	1288	110	792	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-TA--MT-TN	5	47	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0.4203	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC909_KIDNEY	1	1	0.465	FALSE	369	2501	205	193	0	FALSE	ACH-000792
BFTC909_KIDNEY	RP11-680G10.1--GSE1	15	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.69	0.1341	0.0447	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BFTC909_KIDNEY	0.69	1	0.1788	TRUE	458	1351	185	561	0	FALSE	ACH-000792
BFTC909_KIDNEY	HSP90AB1--MT-RNR2	16	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1431	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BFTC909_KIDNEY	1	1	0.1431	FALSE	13	9	0	364	0	FALSE	ACH-000792
BFTC909_KIDNEY	COL1A1--FN1	3	49	COL1A1	15683	chr17:48264092:-	FN1	58112	chr2:216243947:-	INCL_NON_REF_SPLICE	YES	1899	13060	0.03	0	0.0268	0.4382	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0	0.03	0.465	TRUE	0	0	0	18	0	FALSE	ACH-000792
BFTC909_KIDNEY	ARHGEF11--ETV3L	14	2	ARHGEF11	2072	chr1:157014091:-	ETV3L	42272	chr1:157067780:-	ONLY_REF_SPLICE	YES	15	0	0.52	1	0.1252	0.0179	LOCAL_REARRANGEMENT:-:[46674],ARHGEF11->Rho_guanine_nucleotide_exchange_factor_11,chr1:156904632-157015162:-,ETV3L->ETS_variant_3_like,chr1:157061836-157069600:-	BFTC909_KIDNEY	0.52	1	0.1431	TRUE	0	0	0	1	0	TRUE	ACH-000792
BFTC909_KIDNEY	COL1A1--FN1	4	41	COL1A1	12718	chr17:48267057:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	2438	8338	0.02	0.01	0.0358	0.3667	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0.01	0.02	0.4025	TRUE	0	0	0	17	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-TA--MT-TN	9	21	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0805	0.1878	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC909_KIDNEY	1	1	0.2683	FALSE	369	2501	205	193	0	FALSE	ACH-000792
BFTC909_KIDNEY	RP11-1319K7.1--OCLN	14	0	RP11-1319K7.1	12960	chr5:69394512:-	OCLN	23178	chr5:68830521:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1252	0	GTEx_FI:{Blood=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Breast=[count:2=pct:1.8],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Spleen=[count:1=pct:0.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3]},RP11-1319K7.1->chr5:69390202-69424261:-,OCLN->chr5:68788119-68853931:+,occludin	BFTC909_KIDNEY	1	1	0.1252	TRUE	18	3	1	7	0	FALSE	ACH-000792
BFTC909_KIDNEY	RP11-680G10.1--GSE1	13	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	22	1	0.42	0.1163	0.0268	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BFTC909_KIDNEY	0.42	1	0.1431	TRUE	465	1949	224	605	0	FALSE	ACH-000792
BFTC909_KIDNEY	CTD-2337A12.1--CAST	12	4	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	42	1	0.28	0.1073	0.0358	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	BFTC909_KIDNEY	0.28	1	0.1431	TRUE	347	1186	183	220	0	FALSE	ACH-000792
BFTC909_KIDNEY	COL1A1--FN1	6	27	COL1A1	8415	chr17:48271360:-	FN1	22445	chr2:216300576:-	INCL_NON_REF_SPLICE	NO	2237	7110	0.01	0	0.0537	0.2415	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0	0.01	0.2952	FALSE	0	0	0	6	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-ND6--MT-TE	10	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.0894	0.0984	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC909_KIDNEY	0.91	1	0.1878	FALSE	499	1288	110	792	0	FALSE	ACH-000792
BFTC909_KIDNEY	VIM-AS1--FN1	11	7	VIM-AS1	5721	chr10:17257311:-	FN1	36523	chr2:216256502:-	INCL_NON_REF_SPLICE	NO	8	13043	0.69	0	0.0984	0.0626	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0	0.69	0.161	FALSE	0	0	0	1	0	FALSE	ACH-000792
BFTC909_KIDNEY	COL1A1--FN1	3	37	COL1A1	14920	chr17:48264855:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	1981	12971	0.02	0	0.0268	0.3309	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0	0.02	0.3577	TRUE	0	0	0	10	0	FALSE	ACH-000792
BFTC909_KIDNEY	FN1--MT-RNR2	9	13	FN1	20950	chr2:216269143:-	MT-RNR2	54945	chrM:1680:+	INCL_NON_REF_SPLICE	YES	9486	0	0	1	0.0805	0.1163	HGNC_GENEFAM,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BFTC909_KIDNEY	0	1	0.1968	FALSE	0	0	0	1	0	FALSE	ACH-000792
BFTC909_KIDNEY	COL1A1--FN1	12	0	COL1A1	2656	chr17:48277119:-	FN1	48839	chr2:216256517:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1073	0	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	1	1	0.1073	TRUE	0	0	0	1	0	TRUE	ACH-000792
BFTC909_KIDNEY	RP11-96H19.1--RP11-446N19.1	10	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0894	0.0447	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BFTC909_KIDNEY	1	1	0.1341	FALSE	515	4851	409	746	0	FALSE	ACH-000792
BFTC909_KIDNEY	COL1A1--FN1	3	32	COL1A1	13482	chr17:48266293:-	FN1	62625	chr2:216238132:-	INCL_NON_REF_SPLICE	YES	2030	14728	0.02	0	0.0268	0.2862	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0	0.02	0.313	TRUE	0	0	0	1	0	FALSE	ACH-000792
BFTC909_KIDNEY	FN1--MT-RNR2	3	32	FN1	42552	chr2:216237080:-	MT-RNR2	54952	chrM:1687:+	INCL_NON_REF_SPLICE	YES	12856	0	0	1	0.0268	0.2862	HGNC_GENEFAM,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BFTC909_KIDNEY	0	1	0.313	FALSE	0	0	0	1	0	FALSE	ACH-000792
BFTC909_KIDNEY	VIM-AS1--FN1	9	7	VIM-AS1	1257	chr10:17271728:-	FN1	9929	chr2:216300761:-	INCL_NON_REF_SPLICE	NO	4876	0	0	1	0.0805	0.0626	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0	1	0.1431	FALSE	0	0	0	2	0	FALSE	ACH-000792
BFTC909_KIDNEY	KIFC3--CNGB1	9	4	KIFC3	7286	chr16:57828911:-	CNGB1	50654	chr16:57965782:-	ONLY_REF_SPLICE	YES	56	0	0.19	1	0.0805	0.0358	{Klijn_CCL:Kidney=1},LOCAL_REARRANGEMENT:-:[20546],KIFC3->chr16:57792129-57896957:-,kinesin_family_member_C3,CNGB1->chr16:57917503-58005020:-,cyclic_nucleotide_gated_channel_beta_1	BFTC909_KIDNEY	0.19	1	0.1163	TRUE	0	0	0	1	0	TRUE	ACH-000792
BFTC909_KIDNEY	SLC1A5--MT-ND4L	10	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0894	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC909_KIDNEY	1	1	0.0894	FALSE	0	0	0	189	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-TA--MT-TC	9	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0805	0.0268	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BFTC909_KIDNEY	1	1	0.1073	FALSE	462	80	0	856	0	FALSE	ACH-000792
BFTC909_KIDNEY	COL1A1--FN1	3	26	COL1A1	8039	chr17:48271736:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	NO	2131	8338	0.01	0	0.0268	0.2325	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0	0.01	0.2593	FALSE	0	0	0	6	0	FALSE	ACH-000792
BFTC909_KIDNEY	VIM-AS1--FN1	8	5	VIM-AS1	1239	chr10:17271746:-	FN1	9965	chr2:216300725:-	INCL_NON_REF_SPLICE	YES	4984	24	0	0.35	0.0715	0.0447	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0	0.35	0.1162	TRUE	0	0	0	2	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0805	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BFTC909_KIDNEY	1	1	0.0805	FALSE	462	80	0	856	0	FALSE	ACH-000792
BFTC909_KIDNEY	CLTC--RPS6KB1	8	3	CLTC	1316	chr17:57697534:+	RPS6KB1	41184	chr17:57987923:+	ONLY_REF_SPLICE	YES	135	9	0.08	0.55	0.0715	0.0268	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	BFTC909_KIDNEY	0.08	0.55	0.0983	TRUE	0	1	0	5	0	TRUE	ACH-000792
BFTC909_KIDNEY	VTI1A--RP11-57H14.3	8	3	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	11	0	0.5	1	0.0715	0.0268	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	BFTC909_KIDNEY	0.5	1	0.0983	FALSE	272	151	14	158	0	FALSE	ACH-000792
BFTC909_KIDNEY	FN1--MT-RNR2	3	22	FN1	32200	chr2:216248736:-	MT-RNR2	54986	chrM:1721:+	INCL_NON_REF_SPLICE	YES	13085	0	0	1	0.0268	0.1968	HGNC_GENEFAM,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BFTC909_KIDNEY	0	1	0.2236	FALSE	0	0	0	1	0	FALSE	ACH-000792
BFTC909_KIDNEY	FN1--MT-RNR2	3	22	FN1	32164	chr2:216248772:-	MT-RNR2	54950	chrM:1685:+	INCL_NON_REF_SPLICE	YES	10740	0	0	1	0.0268	0.1968	HGNC_GENEFAM,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BFTC909_KIDNEY	0	1	0.2236	FALSE	0	0	0	1	0	FALSE	ACH-000792
BFTC909_KIDNEY	FN1--MT-RNR2	3	21	FN1	42568	chr2:216237064:-	MT-RNR2	55530	chrM:2265:+	INCL_NON_REF_SPLICE	YES	12329	9193	0	0	0.0268	0.1878	HGNC_GENEFAM,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BFTC909_KIDNEY	0	0	0.2146	FALSE	0	0	0	1	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-TA--MT-TN	8	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC909_KIDNEY	1	1	0.0715	FALSE	369	2501	205	193	0	FALSE	ACH-000792
BFTC909_KIDNEY	TPST1--GS1-124K5.4	7	3	TPST1	5907	chr7:65751696:+	GS1-124K5.4	15884	chr7:65960242:+	ONLY_REF_SPLICE	YES	27	3	0.27	0.77	0.0626	0.0268	NEIGHBORS[73163],TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,GS1-124K5.4->chr7:65958693-65960461:+	BFTC909_KIDNEY	0.27	0.77	0.0894	FALSE	17	126	3	8	0	FALSE	ACH-000792
BFTC909_KIDNEY	COL1A1--FN1	3	18	COL1A1	12367	chr17:48267408:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	2212	12971	0.01	0	0.0268	0.161	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0	0.01	0.1878	TRUE	0	0	0	13	0	FALSE	ACH-000792
BFTC909_KIDNEY	FN1--MT-RNR2	4	13	FN1	22005	chr2:216264051:-	MT-RNR2	54964	chrM:1699:+	INCL_NON_REF_SPLICE	YES	8713	0	0	1	0.0358	0.1163	HGNC_GENEFAM,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BFTC909_KIDNEY	0	1	0.1521	FALSE	0	0	0	1	0	FALSE	ACH-000792
BFTC909_KIDNEY	CTD-2337A12.1--CAST	6	4	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	57	1	0.15	0.0537	0.0358	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	BFTC909_KIDNEY	0.15	1	0.0895	TRUE	15	36	8	26	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-ND6--MT-TE	3	16	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0268	0.1431	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC909_KIDNEY	0.9	1	0.1699	FALSE	499	1288	110	792	0	FALSE	ACH-000792
BFTC909_KIDNEY	PDE6B--PPP2R2D	7	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0626	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	BFTC909_KIDNEY	1	1	0.0626	TRUE	7	65	3	22	0	FALSE	ACH-000792
BFTC909_KIDNEY	COL1A1--FN1	3	14	COL1A1	6831	chr17:48272944:-	FN1	22524	chr2:216300497:-	INCL_NON_REF_SPLICE	YES	1894	7840	0.01	0	0.0268	0.1252	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0	0.01	0.152	TRUE	0	0	0	13	0	FALSE	ACH-000792
BFTC909_KIDNEY	EEF2--MT2A	5	5	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	1782	5	0.01	0.67	0.0447	0.0447	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	BFTC909_KIDNEY	0.01	0.67	0.0894	FALSE	1	0	0	19	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-ND6--MT-TE	4	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0.0805	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC909_KIDNEY	1	1	0.1163	FALSE	499	1288	110	792	0	FALSE	ACH-000792
BFTC909_KIDNEY	COL1A1--FN1	3	12	COL1A1	7831	chr17:48271944:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	1872	12971	0.01	0	0.0268	0.1073	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0	0.01	0.1341	TRUE	0	0	0	14	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-ND2--MT-TM	6	0	MT-ND2	1017	chrM:4486:+	MT-TM	5076	chrM:4435:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0	LOCAL_REARRANGEMENT:+:[1],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-TM->chrM:4402-4469:+,mitochondrially_encoded_tRNA_methionine	BFTC909_KIDNEY	1	1	0.0537	FALSE	74	23	0	9	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-ND2--MT-TM	6	0	MT-ND2	1021	chrM:4490:+	MT-TM	5049	chrM:4408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0	LOCAL_REARRANGEMENT:+:[1],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-TM->chrM:4402-4469:+,mitochondrially_encoded_tRNA_methionine	BFTC909_KIDNEY	1	1	0.0537	FALSE	74	23	0	9	0	FALSE	ACH-000792
BFTC909_KIDNEY	VIM-AS1--FN1	3	11	VIM-AS1	1453	chr10:17271532:-	FN1	9951	chr2:216300739:-	INCL_NON_REF_SPLICE	YES	7864	6	0	0.7	0.0268	0.0984	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0	0.7	0.1252	TRUE	0	0	0	2	0	FALSE	ACH-000792
BFTC909_KIDNEY	COL1A2--COL6A2	5	2	COL1A2	10750	chr7:94038135:+	COL6A2	42516	chr21:47536565:+	ONLY_REF_SPLICE	YES	2689	1651	0	0	0.0447	0.0179	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=4;pct=0.05%;dist=Cells_-_Transformed_fibroblasts=4},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	BFTC909_KIDNEY	0	0	0.0626	FALSE	0	0	0	2	0	FALSE	ACH-000792
BFTC909_KIDNEY	CCDC122--ENOX1	5	1	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	8	8	0.43	0.43	0.0447	0.0089	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	BFTC909_KIDNEY	0.43	0.43	0.0536	FALSE	39	52	2	34	0	FALSE	ACH-000792
BFTC909_KIDNEY	POLR2E--GPX4	5	1	POLR2E	1341	chr19:1095258:-	GPX4	13795	chr19:1105185:+	ONLY_REF_SPLICE	YES	90	99	0.06	0.06	0.0447	0.0089	LOCAL_INVERSION:-:+:[8338],POLR2E->chr19:1086594-1095598:-,polymerase_(RNA)_II_subunit_E,GPX4->chr19:1103936-1106787:+,glutathione_peroxidase_4	BFTC909_KIDNEY	0.06	0.06	0.0536	TRUE	0	0	0	1	0	FALSE	ACH-000792
BFTC909_KIDNEY	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BFTC909_KIDNEY	1	1	0.0447	FALSE	292	1546	117	613	0	FALSE	ACH-000792
BFTC909_KIDNEY	VIM-AS1--FN1	3	7	VIM-AS1	1251	chr10:17271734:-	FN1	9977	chr2:216300713:-	INCL_NON_REF_SPLICE	YES	4933	31	0	0.24	0.0268	0.0626	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	0	0.24	0.0894	FALSE	0	0	0	2	0	FALSE	ACH-000792
BFTC909_KIDNEY	FN1--MT-RNR2	3	6	FN1	30136	chr2:216251512:-	MT-RNR2	55677	chrM:2412:+	INCL_NON_REF_SPLICE	YES	11517	11123	0	0	0.0268	0.0537	HGNC_GENEFAM,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BFTC909_KIDNEY	0	0	0.0805	FALSE	0	0	0	1	0	FALSE	ACH-000792
BFTC909_KIDNEY	FN1--MT-RNR2	3	5	FN1	14720	chr2:216279637:-	MT-RNR2	55473	chrM:2208:+	INCL_NON_REF_SPLICE	YES	11309	8766	0	0	0.0268	0.0447	HGNC_GENEFAM,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BFTC909_KIDNEY	0	0	0.0715	FALSE	0	0	0	1	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-ND2--MT-TM	4	1	MT-ND2	1086	chrM:4555:+	MT-TM	5098	chrM:4457:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0.0089	LOCAL_REARRANGEMENT:+:[1],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-TM->chrM:4402-4469:+,mitochondrially_encoded_tRNA_methionine	BFTC909_KIDNEY	1	1	0.0447	FALSE	74	23	0	9	0	FALSE	ACH-000792
BFTC909_KIDNEY	COL1A1--NPM1	4	0	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	BFTC909_KIDNEY	1	1	0.0358	TRUE	0	0	0	31	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC909_KIDNEY	1	1	0.0358	FALSE	499	1288	110	792	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-TA--MT-TN	4	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC909_KIDNEY	1	1	0.0358	FALSE	369	2501	205	193	0	FALSE	ACH-000792
BFTC909_KIDNEY	HSP90AB1--MT-RNR2	3	2	HSP90AB1	7241	chr6:44221064:+	MT-RNR2	10807	chrM:1680:+	INCL_NON_REF_SPLICE	YES	1740	0	0	1	0.0268	0.0179	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BFTC909_KIDNEY	0	1	0.0447	FALSE	13	9	0	364	0	FALSE	ACH-000792
BFTC909_KIDNEY	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0.0537	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BFTC909_KIDNEY	1	1	0.0716	FALSE	467	2173	244	435	0	FALSE	ACH-000792
BFTC909_KIDNEY	EEF2--MT2A	3	1	EEF2	7125	chr19:3979343:-	MT2A	13651	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	2441	6	0	0.4	0.0268	0.0089	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	BFTC909_KIDNEY	0	0.4	0.0357	FALSE	0	0	0	6	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-TA--MT-TN	3	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC909_KIDNEY	1	1	0.0268	FALSE	369	2501	205	193	0	FALSE	ACH-000792
BFTC909_KIDNEY	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC909_KIDNEY	1	1	0.0268	FALSE	369	2501	205	193	0	FALSE	ACH-000792
BFTC909_KIDNEY	PDE6B--PPP2R2D	3	0	PDE6B	1510	chr4:619882:+	PPP2R2D	25830	chr10:133753533:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	BFTC909_KIDNEY	1	1	0.0268	TRUE	5	45	2	9	0	FALSE	ACH-000792
BFTC909_KIDNEY	RP11-120D5.1--MID1	2	4	RP11-120D5.1	2349	chrX:11125021:-	MID1	23013	chrX:10491227:-	ONLY_REF_SPLICE	YES	5	15	0.55	0.29	0.0179	0.0358	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	BFTC909_KIDNEY	0.29	0.55	0.0537	FALSE	0	1	0	2	0	FALSE	ACH-000792
BFTC909_KIDNEY	VIM-AS1--FN1	3	0	VIM-AS1	1128	chr10:17271857:-	FN1	9944	chr2:216300746:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	1	1	0.0268	TRUE	0	0	0	2	0	TRUE	ACH-000792
BFTC909_KIDNEY	VIM-AS1--FN1	3	0	VIM-AS1	1119	chr10:17271866:-	FN1	9934	chr2:216300756:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	BFTC909_KIDNEY	1	1	0.0268	TRUE	0	0	0	2	0	TRUE	ACH-000792
BFTC909_KIDNEY	RP11-120D5.1--MID1	1	7	RP11-120D5.1	10152	chrX:10878163:-	MID1	23013	chrX:10491227:-	ONLY_REF_SPLICE	YES	2	15	0.8	0.35	0.0089	0.0626	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	BFTC909_KIDNEY	0.35	0.8	0.0715	FALSE	0	0	0	1	0	FALSE	ACH-000792
BFTC909_KIDNEY	TPST1--GS1-124K5.4	2	3	TPST1	6959	chr7:65817542:+	GS1-124K5.4	15884	chr7:65960242:+	ONLY_REF_SPLICE	YES	37	3	0.12	0.62	0.0179	0.0268	NEIGHBORS[73163],TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,GS1-124K5.4->chr7:65958693-65960461:+	BFTC909_KIDNEY	0.12	0.62	0.0447	FALSE	3	11	0	2	0	FALSE	ACH-000792
BFTC909_KIDNEY	C3orf52--ARHGEF26-AS1	2	2	C3orf52	2341	chr3:111812336:+	ARHGEF26-AS1	25017	chr3:153748168:-	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0179	0.0179	C3orf52->chr3:111805182-111849851:+,chromosome_3_open_reading_frame_52,ARHGEF26-AS1->ARHGEF26_antisense_RNA_1,chr3:153742190-153839121:-	BFTC909_KIDNEY	0.19	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000792
BFTC909_KIDNEY	COL1A2--COL6A2	2	2	COL1A2	8773	chr7:94035615:+	COL6A2	42516	chr21:47536565:+	ONLY_REF_SPLICE	YES	2058	1651	0	0	0.0179	0.0179	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=4;pct=0.05%;dist=Cells_-_Transformed_fibroblasts=4},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	BFTC909_KIDNEY	0	0	0.0358	FALSE	0	0	0	1	0	FALSE	ACH-000792
BFTC909_KIDNEY	COL1A2--COL6A2	2	2	COL1A2	8773	chr7:94035615:+	COL6A2	49803	chr21:47544565:+	ONLY_REF_SPLICE	NO	2058	2306	0	0	0.0179	0.0179	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=4;pct=0.05%;dist=Cells_-_Transformed_fibroblasts=4},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	BFTC909_KIDNEY	0	0	0.0358	FALSE	0	0	0	1	0	FALSE	ACH-000792
BFTC909_KIDNEY	MB21D2--FGF12	2	2	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	24	2	0.14	0.67	0.0179	0.0179	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	BFTC909_KIDNEY	0.14	0.67	0.0358	FALSE	0	17	0	46	0	FALSE	ACH-000792
BFTC909_KIDNEY	VTI1A--RP11-57H14.3	2	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	NO	11	0	0.27	1	0.0179	0.0179	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	BFTC909_KIDNEY	0.27	1	0.0358	FALSE	28	14	1	23	0	FALSE	ACH-000792
BFTC909_KIDNEY	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0089	0.0447	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BFTC909_KIDNEY	1	1	0.0536	FALSE	275	511	55	178	0	FALSE	ACH-000792
BFTC909_KIDNEY	AP000275.65--MED16	2	0	AP000275.65	5536	chr21:33975471:-	MED16	21910	chr19:875454:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	AP000275.65->chr21:33951132-33984591:-,MED16->chr19:867962-893218:-,mediator_complex_subunit_16	BFTC909_KIDNEY	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000792
BFTC909_KIDNEY	BMPR1B--RAP1GDS1	2	0	BMPR1B	1101	chr4:95679219:+	RAP1GDS1	27637	chr4:99264290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	BMPR1B->bone_morphogenetic_protein_receptor_type_1B,chr4:95679119-96079599:+,RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+	BFTC909_KIDNEY	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000792
BFTC909_KIDNEY	CLTC--RPS6KB1	2	0	CLTC	1316	chr17:57697534:+	RPS6KB1	46421	chr17:58007478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	BFTC909_KIDNEY	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000792
BFTC909_KIDNEY	RP11-120D5.1--MID1	1	4	RP11-120D5.1	2349	chrX:11125021:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	5	8	0.5	0.38	0.0089	0.0358	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	BFTC909_KIDNEY	0.38	0.5	0.0447	FALSE	0	5	0	14	0	FALSE	ACH-000792
BFTC909_KIDNEY	TPST1--GS1-124K5.4	1	3	TPST1	8006	chr7:65821858:+	GS1-124K5.4	15884	chr7:65960242:+	ONLY_REF_SPLICE	YES	29	3	0.12	0.57	0.0089	0.0268	NEIGHBORS[73163],TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,GS1-124K5.4->chr7:65958693-65960461:+	BFTC909_KIDNEY	0.12	0.57	0.0357	FALSE	5	53	0	3	0	FALSE	ACH-000792
BFTC909_KIDNEY	ARHGEF11--ETV3L	1	2	ARHGEF11	2072	chr1:157014091:-	ETV3L	43393	chr1:157062919:-	ONLY_REF_SPLICE	NO	15	0	0.17	1	0.0089	0.0179	LOCAL_REARRANGEMENT:-:[46674],ARHGEF11->Rho_guanine_nucleotide_exchange_factor_11,chr1:156904632-157015162:-,ETV3L->ETS_variant_3_like,chr1:157061836-157069600:-	BFTC909_KIDNEY	0.17	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000792
BFTC909_KIDNEY	C3orf52--ARHGEF26-AS1	1	2	C3orf52	2341	chr3:111812336:+	ARHGEF26-AS1	25020	chr3:153748165:-	ONLY_REF_SPLICE	YES	17	0	0.15	1	0.0089	0.0179	C3orf52->chr3:111805182-111849851:+,chromosome_3_open_reading_frame_52,ARHGEF26-AS1->ARHGEF26_antisense_RNA_1,chr3:153742190-153839121:-	BFTC909_KIDNEY	0.15	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000792
BFTC909_KIDNEY	MAD1L1--EIF3B	1	1	MAD1L1	35008	chr7:1937836:-	EIF3B	59817	chr7:2418769:+	ONLY_REF_SPLICE	YES	81	167	0.02	0.01	0.0089	0.0089	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	BFTC909_KIDNEY	0.01	0.02	0.0178	FALSE	0	2	0	3	0	FALSE	ACH-000792
BFTC909_KIDNEY	TCF25--CCDC127	1	1	TCF25	13576	chr16:89965057:+	CCDC127	28219	chr5:206073:-	ONLY_REF_SPLICE	YES	111	25	0.02	0.07	0.0089	0.0089	TCF25->chr16:89940000-89977792:+,transcription_factor_25,CCDC127->chr5:196986-218330:-,coiled-coil_domain_containing_127	BFTC909_KIDNEY	0.02	0.07	0.0178	TRUE	0	0	0	1	0	FALSE	ACH-000792
TUHR4TKB_KIDNEY	MT-TA--MT-TC	19	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4425	0.0233	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TUHR4TKB_KIDNEY	1	1	0.4658	FALSE	462	80	0	856	0	FALSE	ACH-000495
TUHR4TKB_KIDNEY	CLPTM1L--RP11-43F13.1	9	2	CLPTM1L	6927	chr5:1334404:-	RP11-43F13.1	27096	chr5:1627041:-	ONLY_REF_SPLICE	YES	10	3	0.52	0.79	0.2096	0.0466	CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-,RP11-43F13.1->chr5:1599035-1634120:-	TUHR4TKB_KIDNEY	0.52	0.79	0.2562	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0932	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TUHR4TKB_KIDNEY	1	1	0.0932	FALSE	462	80	0	856	0	FALSE	ACH-000495
TUHR4TKB_KIDNEY	APOLD1--ADD1	3	0	APOLD1	13580	chr12:12975654:+	ADD1	30170	chr4:2883721:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+,ADD1->adducin_1,chr4:2845584-2931803:+	TUHR4TKB_KIDNEY	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	MAPRE1--MT-CO1	3	0	MAPRE1	7982	chr20:31436570:+	MT-CO1	12940	chrM:6220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	MAPRE1->Oncogene{Bushman},chr20:31407699-31438211:+,microtubule_associated_protein_RP/EB_family_member_1,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TUHR4TKB_KIDNEY	1	1	0.0699	FALSE	0	0	0	1	0	FALSE	ACH-000495
TUHR4TKB_KIDNEY	MT-CO2--HYOU1	3	0	MT-CO2	1431	chrM:8016:+	HYOU1	16998	chr11:118915403:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,HYOU1->chr11:118914900-118927913:-,hypoxia_up-regulated_1	TUHR4TKB_KIDNEY	1	1	0.0699	FALSE	0	0	0	1	0	FALSE	ACH-000495
TUHR4TKB_KIDNEY	MT-ND4--DAK	3	0	MT-ND4	1907	chrM:11666:+	DAK	12466	chr11:61109336:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,DAK->chr11:61100682-61120767:+	TUHR4TKB_KIDNEY	1	1	0.0699	FALSE	0	0	0	1	0	FALSE	ACH-000495
TUHR4TKB_KIDNEY	PBXIP1--TSSC4	3	0	PBXIP1	5819	chr1:154919894:-	TSSC4	15092	chr11:2424648:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	PBXIP1->chr1:154916552-154928599:-,pre-B-cell_leukemia_homeobox_interacting_protein_1,TSSC4->chr11:2421718-2425106:+,tumor_suppressing_subtransferable_candidate_4	TUHR4TKB_KIDNEY	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	PLAUR--SDC1	3	0	PLAUR	11657	chr19:44153064:-	SDC1	23681	chr2:20401132:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	HGNC_GENEFAM,PLAUR->Oncogene{Bushman},chr19:44150247-44174699:-,plasminogen_activator,_urokinase_receptor,SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1	TUHR4TKB_KIDNEY	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	SLC16A3--ACTR2	3	0	SLC16A3	10135	chr17:80195734:+	ACTR2	16702	chr2:65454994:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3,ACTR2->ARP2_actin-related_protein_2_homolog_(yeast),chr2:65454887-65498387:+	TUHR4TKB_KIDNEY	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	ST6GALNAC2--STX4	3	0	ST6GALNAC2	15580	chr17:74559949:-	STX4	20132	chr16:31045604:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	ST6GALNAC2->ST6_N-acetylgalactosaminide_alpha-2,6-sialyltransferase_2,chr17:74559792-74583038:-,STX4->Oncogene{Bushman},chr16:31044210-31054296:+,syntaxin_4	TUHR4TKB_KIDNEY	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	CEP112--TRAM1	2	0	CEP112	2540	chr17:64179312:-	TRAM1	52467	chr8:71499411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	CEP112->centrosomal_protein_112,chr17:63631656-64188202:-,TRAM1->chr8:71485677-71520622:-,translocation_associated_membrane_protein_1	TUHR4TKB_KIDNEY	1	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	GAS6--TFDP1	2	0	GAS6	1499	chr13:114566548:-	TFDP1	22838	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_Transformed_fibroblasts=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	TUHR4TKB_KIDNEY	1	1	0.0466	TRUE	0	1	0	5	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	KPNA6--KHDRBS1	2	0	KPNA6	1097	chr1:32573735:+	KHDRBS1	25219	chr1:32495899:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},LOCAL_REARRANGEMENT:+:[47188],KPNA6->chr1:32573639-32642169:+,karyopherin_subunit_alpha_6,KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+	TUHR4TKB_KIDNEY	1	1	0.0466	TRUE	0	0	0	2	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	OPA3--ZCCHC10	2	0	OPA3	2338	chr19:46087881:-	ZCCHC10	21452	chr5:132342612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	OPA3->chr19:46030685-46105470:-,optic_atrophy_3_(autosomal_recessive,_with_chorea_and_spastic_paraplegia),ZCCHC10->chr5:132332677-132362296:-,zinc_finger_CCHC-type_containing_10	TUHR4TKB_KIDNEY	1	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	OSMR--KDM3B	2	0	OSMR	2616	chr5:38869219:+	KDM3B	42138	chr5:137750821:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	OSMR->chr5:38845960-38945698:+,oncostatin_M_receptor,KDM3B->chr5:137688285-137772717:+,lysine_demethylase_3B	TUHR4TKB_KIDNEY	1	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000495
TUHR4TKB_KIDNEY	TGFB2--CYFIP1	2	0	TGFB2	4061	chr1:218578674:+	CYFIP1	48045	chr15:23002876:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	TGFB2->Oncogene{Bushman},chr1:218519577-218617961:+,transforming_growth_factor_beta_2,CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1	TUHR4TKB_KIDNEY	1	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000495
SF268_CENTRAL_NERVOUS_SYSTEM	PPP4R1--ANKRD20A19P	141	41	PPP4R1	2015	chr18:9614224:-	ANKRD20A19P	31697	chr13:24515879:-	ONLY_REF_SPLICE	YES	67	0	0.73	1	1.324	0.385	PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,ANKRD20A19P->ankyrin_repeat_domain_20_family_member_A19,_pseudogene,chr13:24513696-24520921:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.73	1	1.709	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	80	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7512	0.2723	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SF268_CENTRAL_NERVOUS_SYSTEM	0.99	1	1.0235	TRUE	508	994	45	981	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MIR155HG--PRR16	55	60	MIR155HG	2434	chr21:26942233:+	PRR16	12376	chr5:119952790:+	ONLY_REF_SPLICE	YES	3	0	0.97	1	0.5165	0.5634	MIR155HG->MIR155_host_gene,chr21:26934221-26947480:+,PRR16->chr5:119799973-120023027:+,proline_rich_16	SF268_CENTRAL_NERVOUS_SYSTEM	0.97	1	1.0799	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	BTBD7--RP11-371E8.4	61	22	BTBD7	1273	chr14:93799166:-	RP11-371E8.4	30216	chr14:93676170:+	ONLY_REF_SPLICE	YES	1	2	0.99	0.98	0.5728	0.2066	LOCAL_INVERSION:-:+:[18964],BTBD7->BTB_domain_containing_7,chr14:93703896-93799438:-,RP11-371E8.4->chr14:93651318-93684932:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.98	0.99	0.7794	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MIR155HG--PRR16	38	41	MIR155HG	1349	chr21:26934569:+	PRR16	12376	chr5:119952790:+	ONLY_REF_SPLICE	YES	3	0	0.96	1	0.3568	0.385	MIR155HG->MIR155_host_gene,chr21:26934221-26947480:+,PRR16->chr5:119799973-120023027:+,proline_rich_16	SF268_CENTRAL_NERVOUS_SYSTEM	0.96	1	0.7418	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	47	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	195	0	0.2	1	0.4413	0.0282	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.2	1	0.4695	TRUE	519	3926	326	965	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MIR155HG--PRR16	36	21	MIR155HG	1349	chr21:26934569:+	PRR16	14598	chr5:120021649:+	ONLY_REF_SPLICE	YES	3	6	0.95	0.9	0.338	0.1972	MIR155HG->MIR155_host_gene,chr21:26934221-26947480:+,PRR16->chr5:119799973-120023027:+,proline_rich_16	SF268_CENTRAL_NERVOUS_SYSTEM	0.9	0.95	0.5352	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	AP000525.9--LA16c-60G3.6	36	3	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	7	0	0.85	1	0.338	0.0282	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.85	1	0.3662	TRUE	0	42	0	133	42	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CALM3--MYL6	36	0	CALM3	4231	chr19:47109114:+	MYL6	12975	chr12:56553371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.338	0	HGNC_GENEFAM,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.338	TRUE	0	0	0	8	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	TUBB--SERPINE1	36	0	TUBB	3372	chr6:30690359:+	SERPINE1	14122	chr7:100777024:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.338	0	TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.338	TRUE	0	0	0	2	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	AL589743.1--RP11-536C10.17	35	3	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	9	0	0.81	1	0.3287	0.0282	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.81	1	0.3569	TRUE	0	33	0	45	33	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	DDX10--KIAA1377	26	16	DDX10	23828	chr11:108788745:+	KIAA1377	48595	chr11:101863509:+	ONLY_REF_SPLICE	YES	516	31	0.08	0.58	0.2441	0.1502	DDX10->DEAD-box_helicase_10,Oncogene{Bushman},chr11:108535752-108811657:+,KIAA1377->chr11:101785746-101871789:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.08	0.58	0.3943	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CDC25C--CTC-228N24.3	25	18	CDC25C	6690	chr5:137661504:-	CTC-228N24.3	23322	chr5:127359990:-	ONLY_REF_SPLICE	YES	33	32	0.57	0.57	0.2348	0.169	CDC25C->Oncogene{Bushman},cell_division_cycle_25C,chr5:137620954-137674044:-,CTC-228N24.3->chr5:127276118-127418864:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.57	0.57	0.4038	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	ENO1--THY1	27	4	ENO1	10872	chr1:8923997:-	THY1	17390	chr11:119294657:-	INCL_NON_REF_SPLICE	NO	6687	0	0	1	0.2535	0.0376	ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,THY1->Oncogene{Bushman},Thy-1_cell_surface_antigen,chr11:119288090-119295695:-	SF268_CENTRAL_NERVOUS_SYSTEM	0	1	0.2911	FALSE	0	0	0	1	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	EPHB2--LYPLA2	27	0	EPHB2	1205	chr1:23037536:+	LYPLA2	28307	chr1:24119147:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2535	0	{Klijn_CCL:Brain=1},EPHB2->EPH_receptor_B2,chr1:23037332-23241818:+,LYPLA2->chr1:24117460-24122029:+,lysophospholipase_II	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.2535	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	TEAD1--ABCC8	24	10	TEAD1	14839	chr11:12923660:+	ABCC8	35820	chr11:17474830:-	ONLY_REF_SPLICE	YES	113	0	0.23	1	0.2254	0.0939	{Klijn_CCL:Brain=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,ABCC8->ATP_binding_cassette_subfamily_C_member_8,chr11:17414432-17498449:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.23	1	0.3193	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MIR155HG--PRR16	18	31	MIR155HG	2434	chr21:26942233:+	PRR16	14598	chr5:120021649:+	ONLY_REF_SPLICE	YES	3	6	0.94	0.89	0.169	0.2911	MIR155HG->MIR155_host_gene,chr21:26934221-26947480:+,PRR16->chr5:119799973-120023027:+,proline_rich_16	SF268_CENTRAL_NERVOUS_SYSTEM	0.89	0.94	0.4601	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	25	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2348	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.2348	TRUE	0	0	0	434	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	20	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1878	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.1878	FALSE	462	80	0	856	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	19	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1784	0.0188	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.1972	FALSE	499	1288	110	792	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	G2E3--BPHL	17	8	G2E3	12402	chr14:31062845:+	BPHL	36379	chr6:3137596:+	ONLY_REF_SPLICE	YES	7	21	0.78	0.54	0.1596	0.0751	G2E3->G2/M-phase_specific_E3_ubiquitin_protein_ligase,chr14:31028329-31089269:+,BPHL->biphenyl_hydrolase-like_(serine_hydrolase),chr6:3118608-3153812:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.54	0.78	0.2347	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-334E6.12--MT2A	13	23	RP11-334E6.12	2039	chr11:119289699:+	MT2A	5557	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	1166	0	0.03	1	0.1221	0.216	RP11-334E6.12->chr11:119288661-119289824:+,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SF268_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.3381	TRUE	0	0	0	7	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MIR155HG--PRR16	4	58	MIR155HG	2434	chr21:26942233:+	PRR16	12379	chr5:119952793:+	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.0376	0.5446	MIR155HG->MIR155_host_gene,chr21:26934221-26947480:+,PRR16->chr5:119799973-120023027:+,proline_rich_16	SF268_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.5822	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	18	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.169	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.169	TRUE	7	10	0	216	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	PDHX--TTC17	16	7	PDHX	1987	chr11:34938362:+	TTC17	48299	chr11:43511789:+	ONLY_REF_SPLICE	YES	82	30	0.22	0.43	0.1502	0.0657	PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,TTC17->chr11:43380482-43516483:+,tetratricopeptide_repeat_domain_17	SF268_CENTRAL_NERVOUS_SYSTEM	0.22	0.43	0.2159	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	13	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	4	1	0.82	0.1221	0.047	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.82	1	0.1691	TRUE	458	1351	185	561	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	14	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1315	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.1315	FALSE	16	356	14	466	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-334E6.12--MT2A	8	18	RP11-334E6.12	2059	chr11:119289719:+	MT2A	5573	chr16:56642519:+	INCL_NON_REF_SPLICE	YES	454	0	0.05	1	0.0751	0.169	RP11-334E6.12->chr11:119288661-119289824:+,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SF268_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.2441	TRUE	0	0	0	7	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CDC25C--CTC-228N24.3	9	12	CDC25C	5450	chr5:137664173:-	CTC-228N24.3	23322	chr5:127359990:-	ONLY_REF_SPLICE	YES	32	32	0.4	0.4	0.0845	0.1127	CDC25C->Oncogene{Bushman},cell_division_cycle_25C,chr5:137620954-137674044:-,CTC-228N24.3->chr5:127276118-127418864:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.4	0.4	0.1972	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	PAX6--MUC2	10	6	PAX6	11229	chr11:31823419:-	MUC2	29803	chr11:1079658:+	ONLY_REF_SPLICE	YES	90	0	0.15	1	0.0939	0.0563	PAX6->Oncogene{Bushman},chr11:31806340-31839509:-,paired_box_6,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	SF268_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.1502	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTG1	11	1	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	479	3	0.02	0.8	0.1033	0.0094	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.02	0.8	0.1127	TRUE	0	0	0	64	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MIR155HG--PRR16	2	37	MIR155HG	2434	chr21:26942233:+	PRR16	13474	chr5:119954137:+	ONLY_REF_SPLICE	YES	3	4	0.93	0.91	0.0188	0.3474	MIR155HG->MIR155_host_gene,chr21:26934221-26947480:+,PRR16->chr5:119799973-120023027:+,proline_rich_16	SF268_CENTRAL_NERVOUS_SYSTEM	0.91	0.93	0.3662	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	9	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	47	23	0.25	0.41	0.0845	0.0657	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SF268_CENTRAL_NERVOUS_SYSTEM	0.25	0.41	0.1502	TRUE	267	562	48	632	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	10	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	9	1	0.59	0.0939	0.0282	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.59	1	0.1221	TRUE	465	1949	224	605	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	PPP4R1--ANKRD20A19P	9	6	PPP4R1	1763	chr18:9614476:-	ANKRD20A19P	31697	chr13:24515879:-	ONLY_REF_SPLICE	YES	19	0	0.44	1	0.0845	0.0563	PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,ANKRD20A19P->ankyrin_repeat_domain_20_family_member_A19,_pseudogene,chr13:24513696-24520921:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.44	1	0.1408	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	9	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	0.0282	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.1127	FALSE	499	1288	110	792	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	HSPBP1--GRK5	9	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0845	TRUE	1	39	0	134	39	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	7	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0657	0.0751	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SF268_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.1408	FALSE	499	1288	110	792	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTG1	8	1	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	508	3	0.02	0.75	0.0751	0.0094	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.02	0.75	0.0845	TRUE	0	0	0	64	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	SAMD5--SASH1	8	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0751	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0751	TRUE	53	396	64	110	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	VIM--TMSB4X	8	0	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0751	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0751	TRUE	0	0	0	15	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	15	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0376	0.1409	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SF268_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.1785	FALSE	499	1288	110	792	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-334E6.12--MT2A	3	19	RP11-334E6.12	2052	chr11:119289712:+	MT2A	5570	chr16:56642516:+	INCL_NON_REF_SPLICE	YES	764	0	0.03	1	0.0282	0.1784	RP11-334E6.12->chr11:119288661-119289824:+,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SF268_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.2066	TRUE	0	0	0	7	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0657	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0657	FALSE	292	1546	117	613	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	6	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0563	0.0282	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0845	FALSE	416	2512	207	587	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	COL1A1--NPM1	6	0	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0563	TRUE	0	0	0	31	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	DYNC2H1--RP11-196E1.3	6	0	DYNC2H1	84560	chr11:103194718:+	RP11-196E1.3	98728	chr11:119507635:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0563	0	DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1,RP11-196E1.3->chr11:119479135-119529994:+	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0563	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	12	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0.1127	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.1409	FALSE	499	1288	110	792	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	6	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0563	TRUE	0	0	0	434	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	4	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	43	23	0.19	0.3	0.0376	0.0563	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SF268_CENTRAL_NERVOUS_SYSTEM	0.19	0.3	0.0939	TRUE	267	562	48	632	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	DYNC2H1--CNTN5	5	2	DYNC2H1	89274	chr11:103326023:+	CNTN5	97740	chr11:98920321:+	ONLY_REF_SPLICE	YES	38	4	0.16	0.64	0.047	0.0188	{Klijn_CCL:Brain=1},DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1,CNTN5->chr11:98891683-100229616:+,contactin_5	SF268_CENTRAL_NERVOUS_SYSTEM	0.16	0.64	0.0658	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	HIPK3--ARNTL	5	2	HIPK3	6242	chr11:33350179:+	ARNTL	28781	chr11:13371492:+	ONLY_REF_SPLICE	YES	19	3	0.27	0.7	0.047	0.0188	HIPK3->chr11:33278218-33378569:+,homeodomain_interacting_protein_kinase_3,ARNTL->aryl_hydrocarbon_receptor_nuclear_translocator_like,chr11:13298199-13408813:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.27	0.7	0.0658	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	TEAD1--ABCC8	3	10	TEAD1	14839	chr11:12923660:+	ABCC8	33482	chr11:17483372:-	ONLY_REF_SPLICE	YES	113	0	0.1	1	0.0282	0.0939	{Klijn_CCL:Brain=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,ABCC8->ATP_binding_cassette_subfamily_C_member_8,chr11:17414432-17498449:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.1	1	0.1221	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	PKM--TAGLN2	4	5	PKM	16757	chr15:72494873:-	TAGLN2	26566	chr1:159890319:-	INCL_NON_REF_SPLICE	YES	5705	51	0	0.15	0.0376	0.047	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,TAGLN2->chr1:159887897-159895522:-,transgelin_2	SF268_CENTRAL_NERVOUS_SYSTEM	0	0.15	0.0846	FALSE	0	0	0	1	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-110I1.6--MT-ND4	5	1	RP11-110I1.6	2253	chr11:118916151:+	MT-ND4	5775	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	7394	1	0	0.047	0.0094	RP11-110I1.6->chr11:118914899-118916205:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SF268_CENTRAL_NERVOUS_SYSTEM	0	1	0.0564	FALSE	0	0	0	4	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	5	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.047	0.0094	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0564	FALSE	515	4851	409	746	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MYH9--MT2A	5	0	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.047	0	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.047	TRUE	0	0	0	24	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	VIM--TMSB4X	5	0	VIM	2162	chr10:17271419:+	TMSB4X	13357	chrX:12994379:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.047	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.047	TRUE	0	0	0	15	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	YIPF6--BAZ1B	5	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.047	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.047	TRUE	1	23	1	24	8	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CDC25C--CTC-228N24.3	3	7	CDC25C	6690	chr5:137661504:-	CTC-228N24.3	29553	chr5:127302620:-	ONLY_REF_SPLICE	YES	33	23	0.23	0.3	0.0282	0.0657	CDC25C->Oncogene{Bushman},cell_division_cycle_25C,chr5:137620954-137674044:-,CTC-228N24.3->chr5:127276118-127418864:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.23	0.3	0.0939	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CDC25C--CTC-228N24.3	3	7	CDC25C	5450	chr5:137664173:-	CTC-228N24.3	29553	chr5:127302620:-	ONLY_REF_SPLICE	YES	32	23	0.24	0.3	0.0282	0.0657	CDC25C->Oncogene{Bushman},cell_division_cycle_25C,chr5:137620954-137674044:-,CTC-228N24.3->chr5:127276118-127418864:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.24	0.3	0.0939	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	BTBD7--RP11-371E8.4	4	2	BTBD7	1273	chr14:93799166:-	RP11-371E8.4	33197	chr14:93681275:+	ONLY_REF_SPLICE	YES	1	110	0.86	0.05	0.0376	0.0188	LOCAL_INVERSION:-:+:[18964],BTBD7->BTB_domain_containing_7,chr14:93703896-93799438:-,RP11-371E8.4->chr14:93651318-93684932:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.05	0.86	0.0564	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CDC25C--CTC-228N24.3	1	14	CDC25C	6484	chr5:137661710:-	CTC-228N24.3	23322	chr5:127359990:-	ONLY_REF_SPLICE	YES	33	32	0.31	0.32	0.0094	0.1315	CDC25C->Oncogene{Bushman},cell_division_cycle_25C,chr5:137620954-137674044:-,CTC-228N24.3->chr5:127276118-127418864:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.31	0.32	0.1409	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--IFLTD1	4	2	RP11-444D3.1	1258	chr12:24715267:-	IFLTD1	18522	chr12:25702480:-	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0376	0.0188	RP11-444D3.1->chr12:24366190-24715524:-,IFLTD1->chr12:25562241-25801513:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.0564	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	PAX6--MUC2	3	5	PAX6	10396	chr11:31824252:-	MUC2	29803	chr11:1079658:+	ONLY_REF_SPLICE	YES	85	0	0.09	1	0.0282	0.047	PAX6->Oncogene{Bushman},chr11:31806340-31839509:-,paired_box_6,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	SF268_CENTRAL_NERVOUS_SYSTEM	0.09	1	0.0752	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	BTBD7--RP11-371E8.4	2	8	BTBD7	1273	chr14:93799166:-	RP11-371E8.4	31040	chr14:93676994:+	ONLY_REF_SPLICE	YES	1	54	0.91	0.16	0.0188	0.0751	LOCAL_INVERSION:-:+:[18964],BTBD7->BTB_domain_containing_7,chr14:93703896-93799438:-,RP11-371E8.4->chr14:93651318-93684932:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.16	0.91	0.0939	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CDH13--RP11-22H5.2	4	0	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0376	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0376	FALSE	14	31	0	36	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	4	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0376	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0376	TRUE	347	1186	183	220	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	ENO1--THY1	3	2	ENO1	11567	chr1:8923302:-	THY1	22365	chr11:119289682:-	INCL_NON_REF_SPLICE	YES	7826	5466	0	0	0.0282	0.0188	ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,THY1->Oncogene{Bushman},Thy-1_cell_surface_antigen,chr11:119288090-119295695:-	SF268_CENTRAL_NERVOUS_SYSTEM	0	0	0.047	FALSE	0	0	0	1	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	VIM-AS1--ACTB	3	2	VIM-AS1	1643	chr10:17271342:-	ACTB	15320	chr7:5568122:-	INCL_NON_REF_SPLICE	YES	4	13264	0.56	0	0.0282	0.0188	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SF268_CENTRAL_NERVOUS_SYSTEM	0	0.56	0.047	FALSE	0	0	0	1	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	ARNTL--RCN1	3	1	ARNTL	3346	chr11:13331606:+	RCN1	30941	chr11:31906840:+	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0282	0.0094	ARNTL->aryl_hydrocarbon_receptor_nuclear_translocator_like,chr11:13298199-13408813:+,RCN1->chr11:31833939-32127301:+,reticulocalbin_1	SF268_CENTRAL_NERVOUS_SYSTEM	0.57	1	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	ARNTL--USP47	3	1	ARNTL	3346	chr11:13331606:+	USP47	30380	chr11:11895347:+	ONLY_REF_SPLICE	YES	3	67	0.57	0.06	0.0282	0.0094	ARNTL->aryl_hydrocarbon_receptor_nuclear_translocator_like,chr11:13298199-13408813:+,USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47	SF268_CENTRAL_NERVOUS_SYSTEM	0.06	0.57	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MT-ND4--SERPINE1	3	1	MT-ND4	1486	chrM:11245:+	SERPINE1	9152	chr7:100775267:+	INCL_NON_REF_SPLICE	YES	7108	4447	0	0	0.0282	0.0094	MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	SF268_CENTRAL_NERVOUS_SYSTEM	0	0	0.0376	FALSE	0	0	0	2	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	PDHX--TTC17	3	1	PDHX	1110	chr11:34937485:+	TTC17	48299	chr11:43511789:+	ONLY_REF_SPLICE	YES	1	30	0.8	0.12	0.0282	0.0094	PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,TTC17->chr11:43380482-43516483:+,tetratricopeptide_repeat_domain_17	SF268_CENTRAL_NERVOUS_SYSTEM	0.12	0.8	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-110I1.6--MT-ND4	3	1	RP11-110I1.6	2274	chr11:118916172:+	MT-ND4	5796	chrM:11248:+	INCL_NON_REF_SPLICE	YES	0	7053	1	0	0.0282	0.0094	RP11-110I1.6->chr11:118914899-118916205:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SF268_CENTRAL_NERVOUS_SYSTEM	0	1	0.0376	FALSE	0	0	0	4	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	3	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0.0094	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0376	TRUE	477	1352	189	275	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0.0094	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0376	FALSE	407	2205	196	549	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0.0094	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0376	FALSE	467	2173	244	435	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CBL--MMP1	3	0	CBL	1571	chr11:119077322:+	MMP1	27733	chr11:102668231:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	CBL->ArcherDX_panel,Cbl_proto-oncogene,FoundationOne_panel,Oncogene{Bushman},chr11:119076752-119178859:+,MMP1->chr11:102660651-102668891:-,matrix_metallopeptidase_1	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	COL1A1--PTMA	3	0	COL1A1	6093	chr17:48273682:-	PTMA	23757	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CWF19L2--C11orf63	3	0	CWF19L2	13902	chr11:107260800:-	C11orf63	31278	chr11:122795605:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	{Klijn_CCL:Brain=1},CWF19L2->CWF19-like_2,_cell_cycle_control_(S._pombe),chr11:107197071-107328572:-,C11orf63->chr11:122753391-122830506:+,chromosome_11_open_reading_frame_63	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	GAPDH--ACTB	3	0	GAPDH	4654	chr12:6646770:+	ACTB	14989	chr7:5567080:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	GTEx&tcga_normals:6/3694=0.16%,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	THY1--PKM	3	0	THY1	5667	chr11:119291029:-	PKM	18231	chr15:72511415:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	THY1->Oncogene{Bushman},Thy-1_cell_surface_antigen,chr11:119288090-119295695:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	ARNTL--USP47	2	1	ARNTL	3346	chr11:13331606:+	USP47	32466	chr11:11901724:+	ONLY_REF_SPLICE	YES	3	55	0.5	0.05	0.0188	0.0094	ARNTL->aryl_hydrocarbon_receptor_nuclear_translocator_like,chr11:13298199-13408813:+,USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47	SF268_CENTRAL_NERVOUS_SYSTEM	0.05	0.5	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	BCL9L--CCDC84	2	1	BCL9L	2450	chr11:118789535:-	CCDC84	20870	chr11:118869140:+	ONLY_REF_SPLICE	YES	263	463	0.01	0.01	0.0188	0.0094	LOCAL_INVERSION:-:+:[72535],BCL9L->B-cell_CLL/lymphoma_9-like,chr11:118764584-118796317:-,CCDC84->chr11:118868852-118886501:+,coiled-coil_domain_containing_84	SF268_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0282	FALSE	0	0	0	1	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	BTBD7--RP11-371E8.4	1	5	BTBD7	1273	chr14:93799166:-	RP11-371E8.4	32101	chr14:93678378:+	ONLY_REF_SPLICE	YES	1	120	0.86	0.05	0.0094	0.047	LOCAL_INVERSION:-:+:[18964],BTBD7->BTB_domain_containing_7,chr14:93703896-93799438:-,RP11-371E8.4->chr14:93651318-93684932:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.05	0.86	0.0564	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CDH13--RP11-22H5.2	2	1	CDH13	1335	chr16:82660742:+	RP11-22H5.2	37471	chr16:82856817:+	ONLY_REF_SPLICE	YES	289	0	0.01	1	0.0188	0.0094	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0282	FALSE	0	1	0	7	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	MIR155HG--CTD-2334D19.1	2	1	MIR155HG	2434	chr21:26942233:+	CTD-2334D19.1	9000	chr5:120125649:+	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0188	0.0094	MIR155HG->MIR155_host_gene,chr21:26934221-26947480:+,CTD-2334D19.1->chr5:120116913-120126473:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	2	0	0.6	1	0.0188	0.0094	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.6	1	0.0282	FALSE	125	705	46	456	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RELT--POLD3	2	1	RELT	1236	chr11:73087544:+	POLD3	17508	chr11:74305106:+	ONLY_REF_SPLICE	YES	0	22	1	0.12	0.0188	0.0094	RELT->RELT_tumor_necrosis_factor_receptor,chr11:73087309-73108519:+,POLD3->chr11:74204896-74380162:+,polymerase_(DNA)_delta_3,_accessory_subunit	SF268_CENTRAL_NERVOUS_SYSTEM	0.12	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0188	0.0094	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SF268_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0282	FALSE	93	270	15	244	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0.0094	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0282	TRUE	160	277	29	98	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	ANKRD28--TBC1D5	2	0	ANKRD28	1395	chr3:15900884:-	TBC1D5	76790	chr3:17349626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	BOK--ARL6IP6	2	0	BOK	1273	chr2:242498408:+	ARL6IP6	12752	chr2:153577047:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	BOK->BCL2-related_ovarian_killer,Oncogene{Bushman},chr2:242498136-242513546:+,ARL6IP6->ADP_ribosylation_factor_like_GTPase_6_interacting_protein_6,chr2:153574407-153617767:+	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CBL--MMP1	2	0	CBL	2819	chr11:119103405:+	MMP1	27733	chr11:102668231:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	CBL->ArcherDX_panel,Cbl_proto-oncogene,FoundationOne_panel,Oncogene{Bushman},chr11:119076752-119178859:+,MMP1->chr11:102660651-102668891:-,matrix_metallopeptidase_1	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CWF19L2--C11orf63	2	0	CWF19L2	13902	chr11:107260800:-	C11orf63	34048	chr11:122817206:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	{Klijn_CCL:Brain=1},CWF19L2->CWF19-like_2,_cell_cycle_control_(S._pombe),chr11:107197071-107328572:-,C11orf63->chr11:122753391-122830506:+,chromosome_11_open_reading_frame_63	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	DDX24--CDCA4	2	0	DDX24	2850	chr14:94545371:-	CDCA4	17742	chr14:105478272:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	DDX24->DEAD-box_helicase_24,chr14:94517266-94547591:-,CDCA4->cell_division_cycle_associated_4,chr14:105475910-105487485:-	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	EPS15L1--TPM4	2	0	EPS15L1	1173	chr19:16582724:-	TPM4	39957	chr19:16192723:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	{Klijn_CCL:Colo-Rectal=1},EPS15L1->Oncogene{Bushman},chr19:16466050-16582896:-,epidermal_growth_factor_receptor_pathway_substrate_15-like_1,TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	1	0	1	1	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	ETF1--GCAT	2	0	ETF1	1204	chr5:137878786:-	GCAT	19452	chr22:38208894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ETF1->chr5:137841784-137878989:-,eukaryotic_translation_termination_factor_1,GCAT->chr22:38203912-38213183:+,glycine_C-acetyltransferase	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--IFLTD1	2	0	RP11-444D3.1	1253	chr12:24715272:-	IFLTD1	22458	chr12:25679152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	RP11-444D3.1->chr12:24366190-24715524:-,IFLTD1->chr12:25562241-25801513:-	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	1	0	1	1	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--IFLTD1	2	0	RP11-444D3.1	1253	chr12:24715272:-	IFLTD1	20540	chr12:25699488:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	RP11-444D3.1->chr12:24366190-24715524:-,IFLTD1->chr12:25562241-25801513:-	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	TMEM123--YAP1	2	0	TMEM123	5695	chr11:102319543:-	YAP1	19808	chr11:102056749:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	{Klijn_CCL:Head-Neck=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	TRUE	0	0	0	2	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--IFLTD1	1	2	RP11-444D3.1	1253	chr12:24715272:-	IFLTD1	18522	chr12:25702480:-	ONLY_REF_SPLICE	NO	0	1	1	0.75	0.0094	0.0188	RP11-444D3.1->chr12:24366190-24715524:-,IFLTD1->chr12:25562241-25801513:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	TMEM123--YAP1	1	2	TMEM123	5695	chr11:102319543:-	YAP1	17441	chr11:101984875:+	ONLY_REF_SPLICE	YES	2925	980	0	0	0.0094	0.0188	{Klijn_CCL:Head-Neck=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	SF268_CENTRAL_NERVOUS_SYSTEM	0	0	0.0282	FALSE	0	0	0	3	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	BCL9L--CCDC84	1	1	BCL9L	1371	chr11:118795947:-	CCDC84	20870	chr11:118869140:+	ONLY_REF_SPLICE	YES	201	463	0.01	0	0.0094	0.0094	LOCAL_INVERSION:-:+:[72535],BCL9L->B-cell_CLL/lymphoma_9-like,chr11:118764584-118796317:-,CCDC84->chr11:118868852-118886501:+,coiled-coil_domain_containing_84	SF268_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CDC25C--CTC-228N24.3	1	1	CDC25C	5450	chr5:137664173:-	CTC-228N24.3	31594	chr5:127292613:-	ONLY_REF_SPLICE	NO	32	9	0.06	0.18	0.0094	0.0094	CDC25C->Oncogene{Bushman},cell_division_cycle_25C,chr5:137620954-137674044:-,CTC-228N24.3->chr5:127276118-127418864:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.06	0.18	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	CDH13--RP11-22H5.2	1	1	CDH13	2482	chr16:82671372:+	RP11-22H5.2	37471	chr16:82856817:+	ONLY_REF_SPLICE	YES	347	0	0.01	1	0.0094	0.0094	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0188	FALSE	0	1	0	2	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	ERP44--TEX10	1	1	ERP44	1257	chr9:102861066:-	TEX10	32550	chr9:103072661:-	ONLY_REF_SPLICE	YES	173	77	0.01	0.03	0.0094	0.0094	ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44,TEX10->chr9:103064359-103115221:-,testis_expressed_10	SF268_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	HIPK3--ARNTL	1	1	HIPK3	2218	chr11:33279435:+	ARNTL	28781	chr11:13371492:+	ONLY_REF_SPLICE	YES	14	3	0.12	0.4	0.0094	0.0094	HIPK3->chr11:33278218-33378569:+,homeodomain_interacting_protein_kinase_3,ARNTL->aryl_hydrocarbon_receptor_nuclear_translocator_like,chr11:13298199-13408813:+	SF268_CENTRAL_NERVOUS_SYSTEM	0.12	0.4	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	PDHX--TTC17	1	1	PDHX	1658	chr11:34938033:+	TTC17	48299	chr11:43511789:+	ONLY_REF_SPLICE	NO	1	30	0.67	0.06	0.0094	0.0094	PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,TTC17->chr11:43380482-43516483:+,tetratricopeptide_repeat_domain_17	SF268_CENTRAL_NERVOUS_SYSTEM	0.06	0.67	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-357C3.3--ARHGEF9	1	1	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	27535	chrX:62898452:-	ONLY_REF_SPLICE	NO	73	32	0.03	0.06	0.0094	0.0094	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	SF268_CENTRAL_NERVOUS_SYSTEM	0.03	0.06	0.0188	TRUE	0	2	0	6	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0094	0.0094	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF268_CENTRAL_NERVOUS_SYSTEM	1	1	0.0188	FALSE	192	492	57	212	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	RPSA--PDHB	1	1	RPSA	3036	chr3:39450215:+	PDHB	12498	chr3:58416669:-	ONLY_REF_SPLICE	NO	5411	217	0	0.01	0.0094	0.0094	RPSA->chr3:39448180-39454033:+,ribosomal_protein_SA,PDHB->chr3:58413357-58419584:-,pyruvate_dehydrogenase_(lipoamide)_beta	SF268_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000655
SF268_CENTRAL_NERVOUS_SYSTEM	WEE1--EIF4G2	1	1	WEE1	10343	chr11:9607074:+	EIF4G2	23134	chr11:10825965:-	ONLY_REF_SPLICE	YES	161	1982	0.01	0	0.0094	0.0094	WEE1->WEE1_G2_checkpoint_kinase,chr11:9595228-9615004:+,EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2	SF268_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000655
NCIH747_LARGE_INTESTINE	AC104389.28--HBE1	62	56	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	28	1	0.81	0.99	0.7921	0.7154	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NCIH747_LARGE_INTESTINE	0.81	0.99	1.5075	TRUE	0	48	0	65	48	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	KANSL1--ARL17B	54	33	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	36	70	0.71	0.55	0.6899	0.4216	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH747_LARGE_INTESTINE	0.55	0.71	1.1115	TRUE	181	1564	124	196	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	TIMM23B--LINC00843	46	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.5877	0.2938	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH747_LARGE_INTESTINE	0.99	1	0.8815	TRUE	508	994	45	981	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	107	MT-ND4	1754	chrM:11513:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	NO	6229	0	0.02	1	0.0383	1.367	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH747_LARGE_INTESTINE	0.02	1	1.4053	FALSE	344	827	44	306	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	AC104389.28--HBE1	14	57	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	28	0	0.72	1	0.1789	0.7282	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NCIH747_LARGE_INTESTINE	0.72	1	0.9071	TRUE	0	35	0	55	35	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-TA--MT-TC	27	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3449	0.0639	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH747_LARGE_INTESTINE	1	1	0.4088	FALSE	462	80	0	856	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	96	MT-ND4	1170	chrM:10929:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	YES	49	0	0.67	1	0.0511	1.2265	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH747_LARGE_INTESTINE	0.67	1	1.2776	FALSE	344	826	44	306	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	100	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	73	0	0.59	1	0.0383	1.2776	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH747_LARGE_INTESTINE	0.59	1	1.3159	FALSE	344	827	44	306	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	TIMM23--RP11-464F9.1	27	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	225	6	0.11	0.82	0.3449	0.0128	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH747_LARGE_INTESTINE	0.11	0.82	0.3577	TRUE	519	3926	326	965	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	91	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	21	0	0.82	1	0.0511	1.1626	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH747_LARGE_INTESTINE	0.82	1	1.2137	FALSE	344	826	44	306	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	67	MT-ND4	1466	chrM:11225:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	709	1	0.09	0.99	0.0383	0.856	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH747_LARGE_INTESTINE	0.09	0.99	0.8943	FALSE	344	827	44	306	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	60	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	12	0	0.84	1	0.0511	0.7665	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH747_LARGE_INTESTINE	0.84	1	0.8176	FALSE	344	821	44	306	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	POLR2J4--ADCY1	7	34	POLR2J4	7076	chr7:44026200:-	ADCY1	33478	chr7:45703888:+	ONLY_REF_SPLICE	YES	3	2	0.93	0.95	0.0894	0.4344	POLR2J4->chr7:43980494-44058774:-,chr7:44053161-44058769:-,polymerase_(RNA)_II_subunit_J4,_pseudogene,ADCY1->adenylate_cyclase_1_(brain),chr7:45613739-45762715:+	NCIH747_LARGE_INTESTINE	0.93	0.95	0.5238	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	10	13	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16495	1	0	0.96	0.1278	0.1661	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	0.96	0.2939	FALSE	231	217	16	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	13	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1661	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	1	1	0.1661	FALSE	230	193	14	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	30	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	11708	0	0	1	0.0639	0.3833	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH747_LARGE_INTESTINE	0	1	0.4472	FALSE	328	800	43	304	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	15	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15822	31	0	0.43	0.1022	0.1916	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	0.43	0.2938	FALSE	231	217	16	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	RP11-123O10.4--GRIP1	11	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1405	0.0128	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH747_LARGE_INTESTINE	1	1	0.1533	FALSE	416	2512	207	587	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	24	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	54	0	0.35	1	0.0639	0.3066	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH747_LARGE_INTESTINE	0.35	1	0.3705	FALSE	344	826	44	306	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	25	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4279	31	0.01	0.48	0.0511	0.3194	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0.01	0.48	0.3705	FALSE	218	210	16	281	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	25	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2446	31	0.01	0.48	0.0511	0.3194	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0.01	0.48	0.3705	FALSE	216	209	16	281	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	POLR2J4--ADCY1	8	8	POLR2J4	7076	chr7:44026200:-	ADCY1	34862	chr7:45717468:+	ONLY_REF_SPLICE	YES	3	1	0.84	0.94	0.1022	0.1022	POLR2J4->chr7:43980494-44058774:-,chr7:44053161-44058769:-,polymerase_(RNA)_II_subunit_J4,_pseudogene,ADCY1->adenylate_cyclase_1_(brain),chr7:45613739-45762715:+	NCIH747_LARGE_INTESTINE	0.84	0.94	0.2044	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	16	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	16259	0	0	1	0.0639	0.2044	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	1	0.2683	FALSE	231	217	16	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	20	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13955	31	0	0.44	0.0511	0.2555	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	0.44	0.3066	FALSE	231	215	16	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	18	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	14470	129	0	0.15	0.0511	0.23	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	0.15	0.2811	FALSE	231	217	16	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1022	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	1	1	0.1022	FALSE	230	198	14	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1022	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	1	1	0.1022	FALSE	231	205	14	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	19	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	789	0	0.03	1	0.0383	0.2427	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH747_LARGE_INTESTINE	0.03	1	0.281	FALSE	344	827	44	306	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	POLR2J4--ADCY1	2	23	POLR2J4	5999	chr7:44027277:-	ADCY1	33478	chr7:45703888:+	ONLY_REF_SPLICE	YES	3	2	0.89	0.93	0.0256	0.2938	POLR2J4->chr7:43980494-44058774:-,chr7:44053161-44058769:-,polymerase_(RNA)_II_subunit_J4,_pseudogene,ADCY1->adenylate_cyclase_1_(brain),chr7:45613739-45762715:+	NCIH747_LARGE_INTESTINE	0.89	0.93	0.3194	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	18	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14470	31	0	0.4	0.0383	0.23	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	0.4	0.2683	FALSE	231	217	16	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	9	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	19641	506	0	0.03	0.0639	0.115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	0.03	0.1789	FALSE	231	217	16	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	15822	1649	0	0.01	0.0767	0.0639	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	0.01	0.1406	FALSE	231	217	16	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	0	MT-ND4	1003	chrM:10762:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0894	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH747_LARGE_INTESTINE	1	1	0.0894	FALSE	344	821	44	306	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	7	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17730	0	0	1	0.0639	0.0894	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	1	0.1533	FALSE	231	217	16	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	15	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	16408	0	0	1	0.0383	0.1916	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	1	0.2299	FALSE	231	217	16	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	15	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	16026	290	0	0.06	0.0383	0.1916	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	0.06	0.2299	FALSE	231	217	16	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	11	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	65	0	0.19	1	0.0511	0.1405	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH747_LARGE_INTESTINE	0.19	1	0.1916	FALSE	344	826	44	306	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	2	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	17880	1236	0	0.01	0.0767	0.0256	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	0.01	0.1023	FALSE	231	205	14	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	8	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	16522	1236	0	0.01	0.0511	0.1022	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	0.01	0.1533	FALSE	231	217	16	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	NPM1P24--SET	6	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0767	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH747_LARGE_INTESTINE	1	1	0.0767	TRUE	0	0	0	434	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	7	MT-ND4	1447	chrM:11206:+	MT-ATP8	5436	chrM:8423:+	INCL_NON_REF_SPLICE	YES	18429	0	0	1	0.0511	0.0894	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	1	0.1405	FALSE	231	217	16	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	10	MT-ND4	1633	chrM:11392:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	18812	0	0	1	0.0383	0.1278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	1	0.1661	FALSE	231	217	16	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	10	MT-ND4	1651	chrM:11410:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	18234	339	0	0.04	0.0383	0.1278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	0.04	0.1661	FALSE	231	217	16	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	8	MT-ND4	1531	chrM:11290:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	19856	0	0	1	0.0383	0.1022	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	1	0.1405	FALSE	231	217	16	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	4	MT-ND4	1311	chrM:11070:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	17963	0	0	1	0.0511	0.0511	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	1	0.1022	FALSE	231	205	14	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	3	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	18476	0	0	1	0.0511	0.0383	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	1	0.0894	FALSE	231	216	16	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-CO3--MT-ATP8	4	0	MT-CO3	1123	chrM:9329:+	MT-ATP8	4843	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	1	1	0.0511	FALSE	16	100	1	11	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	4	MT-ND4	1314	chrM:11073:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	17810	0	0	1	0.0383	0.0511	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	0	1	0.0894	FALSE	231	205	14	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH747_LARGE_INTESTINE	1	1	0.0511	FALSE	462	80	0	856	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH747_LARGE_INTESTINE	1	1	0.0511	TRUE	0	0	0	434	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	POLR2J4--ADCY1	3	1	POLR2J4	3385	chr7:44054205:-	ADCY1	34862	chr7:45717468:+	ONLY_REF_SPLICE	YES	75	1	0.05	0.8	0.0383	0.0128	POLR2J4->chr7:43980494-44058774:-,chr7:44053161-44058769:-,polymerase_(RNA)_II_subunit_J4,_pseudogene,ADCY1->adenylate_cyclase_1_(brain),chr7:45613739-45762715:+	NCIH747_LARGE_INTESTINE	0.05	0.8	0.0511	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND3--MT-ATP8	3	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	1	1	0.0383	FALSE	351	233	23	137	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5571	chrM:8558:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	1	1	0.0383	FALSE	231	204	14	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1186	chrM:10945:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH747_LARGE_INTESTINE	1	1	0.0383	FALSE	230	193	14	283	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	RP11-680G10.1--GSE1	2	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	55	1	0.08	0.0256	0.0383	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH747_LARGE_INTESTINE	0.08	1	0.0639	TRUE	465	1949	224	605	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	KANSL1--ARL17B	1	6	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	41	70	0.15	0.09	0.0128	0.0767	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH747_LARGE_INTESTINE	0.09	0.15	0.0895	TRUE	105	90	7	93	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	AC084018.1--MZT2A	2	0	AC084018.1	5060	chr12:122237753:-	MZT2A	16862	chr2:132241791:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	AC084018.1->chr12:122233173-122241812:-,MZT2A->chr2:132222473-132250316:-,mitotic_spindle_organizing_protein_2A	NCIH747_LARGE_INTESTINE	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH747_LARGE_INTESTINE	AC104389.28--HBE1	2	0	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NCIH747_LARGE_INTESTINE	1	1	0.0256	TRUE	0	11	0	26	8	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	DLG1--PARL	2	0	DLG1	5122	chr3:197009550:-	PARL	44820	chr3:183585848:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component,PARL->chr3:183547173-183602721:-,presenilin_associated_rhomboid_like	NCIH747_LARGE_INTESTINE	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH747_LARGE_INTESTINE	ISY1--RPN1	2	0	ISY1	7632	chr3:128859211:-	RPN1	21181	chr3:128363826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	ISY1->ISY1_splicing_factor_homolog,chr3:128846258-128880136:-,RPN1->Oncogene{Bushman},chr3:128338817-128399918:-,ribophorin_I	NCIH747_LARGE_INTESTINE	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH747_LARGE_INTESTINE	LAMA5--FLII	2	0	LAMA5	25651	chr20:60898512:-	FLII	52673	chr17:18152722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5,FLII->Oncogene{Bushman},chr17:18148150-18162230:-,flightless_I_actin_binding_protein	NCIH747_LARGE_INTESTINE	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH747_LARGE_INTESTINE	RP11-680G10.1--GSE1	1	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	23	1	0.15	0.0128	0.0383	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH747_LARGE_INTESTINE	0.15	1	0.0511	TRUE	458	1351	185	561	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0128	0.0256	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH747_LARGE_INTESTINE	1	1	0.0384	TRUE	62	24	1	171	0	FALSE	ACH-000403
NCIH747_LARGE_INTESTINE	POLR2J4--ADCY1	1	1	POLR2J4	4398	chr7:44053192:-	ADCY1	34862	chr7:45717468:+	ONLY_REF_SPLICE	YES	53	1	0.04	0.67	0.0128	0.0128	POLR2J4->chr7:43980494-44058774:-,chr7:44053161-44058769:-,polymerase_(RNA)_II_subunit_J4,_pseudogene,ADCY1->adenylate_cyclase_1_(brain),chr7:45613739-45762715:+	NCIH747_LARGE_INTESTINE	0.04	0.67	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000403
NCIH23_LUNG	BAG6--NELFE	442	238	BAG6	2050	chr6:31619433:-	NELFE	18684	chr6:31924787:-	ONLY_REF_SPLICE	YES	483	513	0.58	0.57	4.3212	2.3268	BAG6->BCL2_associated_athanogene_6,chr6:31606805-31620482:-,NELFE->chr6:31919864-31926887:-,negative_elongation_factor_complex_member_E	NCIH23_LUNG	0.57	0.58	6.648	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	TIMM23B--LINC00843	148	57	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4469	0.5573	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH23_LUNG	1	1	2.0042	TRUE	508	994	45	981	0	FALSE	ACH-000900
NCIH23_LUNG	TIMM23--RP11-464F9.1	82	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	260	2	0.25	0.98	0.8017	0.0391	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH23_LUNG	0.25	0.98	0.8408	TRUE	519	3926	326	965	0	FALSE	ACH-000900
NCIH23_LUNG	THADA--MTA3	68	19	THADA	1116	chr2:43823070:-	MTA3	75860	chr2:42909541:+	ONLY_REF_SPLICE	YES	19	162	0.82	0.35	0.6648	0.1858	THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	NCIH23_LUNG	0.35	0.82	0.8506	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	PLXDC1--TAF13	53	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5182	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH23_LUNG	1	1	0.5182	TRUE	7	10	0	216	0	FALSE	ACH-000900
NCIH23_LUNG	DBT--VAV3	47	0	DBT	1065	chr1:100715326:-	VAV3	31570	chr1:108322114:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4595	0	DBT->chr1:100652475-100715390:-,dihydrolipoamide_branched_chain_transacylase_E2,VAV3->Oncogene{Bushman},chr1:108113782-108507766:-,vav_guanine_nucleotide_exchange_factor_3	NCIH23_LUNG	1	1	0.4595	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	MT-TA--MT-TC	35	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3422	0.0684	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH23_LUNG	1	1	0.4106	FALSE	462	80	0	856	0	FALSE	ACH-000900
NCIH23_LUNG	MT-ND6--MT-TE	30	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2933	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH23_LUNG	1	1	0.2933	FALSE	499	1288	110	792	0	FALSE	ACH-000900
NCIH23_LUNG	AL589743.1--RP11-536C10.17	25	6	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	12	0	0.72	1	0.2444	0.0587	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	NCIH23_LUNG	0.72	1	0.3031	TRUE	0	33	0	45	33	FALSE	ACH-000900
NCIH23_LUNG	AP000525.9--LA16c-60G3.6	25	6	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	13	0	0.7	1	0.2444	0.0587	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH23_LUNG	0.7	1	0.3031	TRUE	0	42	0	133	42	FALSE	ACH-000900
NCIH23_LUNG	RP11-123O10.4--GRIP1	23	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2249	0.088	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH23_LUNG	1	1	0.3129	FALSE	416	2512	207	587	0	FALSE	ACH-000900
NCIH23_LUNG	CTD-2314B22.3--RP11-536C10.19	19	6	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	14	0	0.64	1	0.1858	0.0587	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	NCIH23_LUNG	0.64	1	0.2445	TRUE	0	2	0	9	2	TRUE	ACH-000900
NCIH23_LUNG	C15orf57--CBX3	16	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	53	98	0.35	0.22	0.1564	0.1173	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH23_LUNG	0.22	0.35	0.2737	TRUE	267	562	48	632	0	FALSE	ACH-000900
NCIH23_LUNG	THADA--MTA3	11	28	THADA	1400	chr2:43822786:-	MTA3	75860	chr2:42909541:+	ONLY_REF_SPLICE	YES	52	162	0.43	0.19	0.1075	0.2737	THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	NCIH23_LUNG	0.19	0.43	0.3812	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	MT-CO3--MT-ATP6	5	40	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	18	78	0.71	0.37	0.0489	0.3911	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH23_LUNG	0.37	0.71	0.44	FALSE	189	492	56	216	0	FALSE	ACH-000900
NCIH23_LUNG	MT-ND6--MT-TE	13	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1271	0.0587	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH23_LUNG	1	1	0.1858	FALSE	499	1288	110	792	0	FALSE	ACH-000900
NCIH23_LUNG	MT-ND6--MT-TE	12	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	6	0	0.75	1	0.1173	0.0587	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH23_LUNG	0.75	1	0.176	FALSE	499	1288	110	792	0	FALSE	ACH-000900
NCIH23_LUNG	MT-CO3--MT-ATP6	3	40	MT-CO3	1159	chrM:9365:+	MT-ATP6	4932	chrM:8674:+	INCL_NON_REF_SPLICE	YES	11	111	0.8	0.28	0.0293	0.3911	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH23_LUNG	0.28	0.8	0.4204	FALSE	189	492	56	216	0	FALSE	ACH-000900
NCIH23_LUNG	RALGAPA2--AFF3	12	3	RALGAPA2	1114	chr20:20693018:-	AFF3	66020	chr2:100453986:-	ONLY_REF_SPLICE	YES	5	15	0.75	0.5	0.1173	0.0293	RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-,AFF3->AF4/FMR2_family_member_3,Oncogene{Bushman},chr2:100162323-100759201:-	NCIH23_LUNG	0.5	0.75	0.1466	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	MT-CO3--MT-ATP6	3	35	MT-CO3	1138	chrM:9344:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	8	22	0.83	0.63	0.0293	0.3422	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH23_LUNG	0.63	0.83	0.3715	FALSE	189	492	56	216	0	FALSE	ACH-000900
NCIH23_LUNG	MT-CO3--MT-ATP6	11	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	8	1	0.6	0.92	0.1075	0.0098	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH23_LUNG	0.6	0.92	0.1173	FALSE	189	492	56	216	0	FALSE	ACH-000900
NCIH23_LUNG	MT-ND6--MT-TE	11	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1075	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH23_LUNG	1	1	0.1075	FALSE	499	1288	110	792	0	FALSE	ACH-000900
NCIH23_LUNG	MT-CO3--MT-ATP6	3	31	MT-CO3	1105	chrM:9311:+	MT-ATP6	5182	chrM:8924:+	INCL_NON_REF_SPLICE	YES	4	126	0.89	0.21	0.0293	0.3031	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH23_LUNG	0.21	0.89	0.3324	FALSE	189	492	56	216	0	FALSE	ACH-000900
NCIH23_LUNG	PIGU--DDX11L8	9	2	PIGU	2216	chr20:33244984:-	DDX11L8	20186	chr12:93000:-	ONLY_REF_SPLICE	YES	71	0	0.13	1	0.088	0.0196	PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,DDX11L8->DEAD/H-box_helicase_11_like_8,chr12:92239-93430:-	NCIH23_LUNG	0.13	1	0.1076	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	MT-CO3--MT-ATP6	7	9	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	8	1	0.67	0.94	0.0684	0.088	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH23_LUNG	0.67	0.94	0.1564	FALSE	189	492	56	216	0	FALSE	ACH-000900
NCIH23_LUNG	HSPBP1--GRK5	9	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.088	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH23_LUNG	1	1	0.088	TRUE	1	39	0	134	39	FALSE	ACH-000900
NCIH23_LUNG	MT-CO3--MT-ATP6	3	24	MT-CO3	1033	chrM:9239:+	MT-ATP6	4768	chrM:8510:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0293	0.2346	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH23_LUNG	0.96	1	0.2639	FALSE	189	492	56	216	0	FALSE	ACH-000900
NCIH23_LUNG	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.088	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH23_LUNG	1	1	0.088	FALSE	462	80	0	856	0	FALSE	ACH-000900
NCIH23_LUNG	SCAF4--TIAM1	7	6	SCAF4	16796	chr21:33057362:-	TIAM1	25224	chr21:32836348:-	ONLY_REF_SPLICE	YES	78	2	0.14	0.87	0.0684	0.0587	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-	NCIH23_LUNG	0.14	0.87	0.1271	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	RP11-680G10.1--GSE1	7	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	62	1	0.16	0.0684	0.0489	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH23_LUNG	0.16	1	0.1173	TRUE	458	1351	185	561	0	FALSE	ACH-000900
NCIH23_LUNG	C15orf57--CBX3	6	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	52	106	0.19	0.1	0.0587	0.0587	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH23_LUNG	0.1	0.19	0.1174	TRUE	267	562	48	632	0	FALSE	ACH-000900
NCIH23_LUNG	FGFR2--COL14A1	7	1	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	7	0	0.53	1	0.0684	0.0098	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH23_LUNG	0.53	1	0.0782	TRUE	0	0	0	32	0	FALSE	ACH-000900
NCIH23_LUNG	MT-CO3--MT-ATP6	7	0	MT-CO3	1032	chrM:9238:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0684	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH23_LUNG	1	1	0.0684	FALSE	189	492	56	216	0	FALSE	ACH-000900
NCIH23_LUNG	PEX7--RP3-325F22.3	6	3	PEX7	5758	chr6:137166830:+	RP3-325F22.3	17046	chr6:136958069:+	ONLY_REF_SPLICE	YES	25	0	0.26	1	0.0587	0.0293	PEX7->chr6:137143717-137235075:+,peroxisomal_biogenesis_factor_7,RP3-325F22.3->chr6:136950310-136969137:+	NCIH23_LUNG	0.26	1	0.088	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	THADA--MTA3	5	5	THADA	1116	chr2:43823070:-	MTA3	77166	chr2:42922905:+	ONLY_REF_SPLICE	YES	19	195	0.34	0.05	0.0489	0.0489	THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	NCIH23_LUNG	0.05	0.34	0.0978	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	ASB8--HECTD4	6	0	ASB8	2389	chr12:48551242:-	HECTD4	13304	chr12:112757546:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0587	0	ASB8->ankyrin_repeat_and_SOCS_box_containing_8,chr12:48541571-48574996:-,HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-	NCIH23_LUNG	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	MT-CO3--MT-ATP6	6	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH23_LUNG	1	1	0.0587	FALSE	189	492	56	216	0	FALSE	ACH-000900
NCIH23_LUNG	MT-CO3--MT-ATP6	6	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH23_LUNG	1	1	0.0587	FALSE	189	492	56	216	0	FALSE	ACH-000900
NCIH23_LUNG	MT-TA--MT-TC	4	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0.0782	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH23_LUNG	1	1	0.1173	FALSE	462	80	0	856	0	FALSE	ACH-000900
NCIH23_LUNG	MT-TA--MT-TC	4	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0.0782	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH23_LUNG	1	1	0.1173	FALSE	462	80	0	856	0	FALSE	ACH-000900
NCIH23_LUNG	MT-ND6--MT-TE	4	6	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	7	0	0.59	1	0.0391	0.0587	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH23_LUNG	0.59	1	0.0978	FALSE	499	1288	110	792	0	FALSE	ACH-000900
NCIH23_LUNG	RP11-123O10.4--GRIP1	4	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0391	0.0587	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH23_LUNG	1	1	0.0978	FALSE	93	270	15	244	0	FALSE	ACH-000900
NCIH23_LUNG	RP11-120D5.1--MID1	5	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0489	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH23_LUNG	1	1	0.0489	FALSE	16	356	14	466	0	FALSE	ACH-000900
NCIH23_LUNG	RP11-680G10.1--GSE1	4	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	134	1	0.06	0.0391	0.0391	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH23_LUNG	0.06	1	0.0782	TRUE	465	1949	224	605	0	FALSE	ACH-000900
NCIH23_LUNG	MT-ND6--MT-TE	3	7	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0293	0.0684	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH23_LUNG	1	1	0.0977	FALSE	499	1288	110	792	0	FALSE	ACH-000900
NCIH23_LUNG	MT-ND3--MT-CO3	4	2	MT-ND3	1284	chrM:10342:+	MT-CO3	5037	chrM:9897:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0.0196	LOCAL_REARRANGEMENT:+:[69],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH23_LUNG	1	1	0.0587	FALSE	2	2	0	11	0	FALSE	ACH-000900
NCIH23_LUNG	MT-ND6--MT-TE	3	6	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	6	0	0.6	1	0.0293	0.0587	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH23_LUNG	0.6	1	0.088	FALSE	499	1288	110	792	0	FALSE	ACH-000900
NCIH23_LUNG	MT-ND6--MT-TE	4	2	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0.0196	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH23_LUNG	1	1	0.0587	FALSE	499	1288	110	792	0	FALSE	ACH-000900
NCIH23_LUNG	RPS6KB1--VMP1	4	2	RPS6KB1	1240	chr17:57970686:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	78	416	0.07	0.01	0.0391	0.0196	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH23_LUNG	0.01	0.07	0.0587	FALSE	0	9	0	10	6	FALSE	ACH-000900
NCIH23_LUNG	MT-CO3--MT-ATP6	4	1	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	13	1	0.28	0.83	0.0391	0.0098	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH23_LUNG	0.28	0.83	0.0489	FALSE	189	492	56	216	0	FALSE	ACH-000900
NCIH23_LUNG	MT-CO3--MT-ATP6	4	1	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	13	1	0.28	0.83	0.0391	0.0098	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH23_LUNG	0.28	0.83	0.0489	FALSE	189	492	56	216	0	FALSE	ACH-000900
NCIH23_LUNG	MT-CO3--MT-ATP6	4	1	MT-CO3	1181	chrM:9387:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	13	1	0.28	0.83	0.0391	0.0098	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH23_LUNG	0.28	0.83	0.0489	FALSE	189	492	56	216	0	FALSE	ACH-000900
NCIH23_LUNG	MT-ND3--MT-CO3	3	5	MT-ND3	1222	chrM:10280:+	MT-CO3	4352	chrM:9212:+	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.0293	0.0489	LOCAL_REARRANGEMENT:+:[69],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH23_LUNG	0.73	1	0.0782	FALSE	2	2	0	11	0	FALSE	ACH-000900
NCIH23_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH23_LUNG	1	1	0.0391	FALSE	499	1288	110	792	0	FALSE	ACH-000900
NCIH23_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH23_LUNG	1	1	0.0391	FALSE	499	1288	110	792	0	FALSE	ACH-000900
NCIH23_LUNG	MT-ND3--MT-CO3	3	2	MT-ND3	1036	chrM:10094:+	MT-CO3	5075	chrM:9935:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0293	0.0196	LOCAL_REARRANGEMENT:+:[69],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH23_LUNG	1	1	0.0489	FALSE	2	2	0	11	0	FALSE	ACH-000900
NCIH23_LUNG	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0293	0.0196	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH23_LUNG	0.83	1	0.0489	FALSE	515	4851	409	746	0	FALSE	ACH-000900
NCIH23_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1158	chrM:9364:+	MT-ATP6	5461	chrM:9203:+	INCL_NON_REF_SPLICE	YES	11	0	0.27	1	0.0293	0.0098	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH23_LUNG	0.27	1	0.0391	FALSE	189	492	56	216	0	FALSE	ACH-000900
NCIH23_LUNG	MPP5--ATP6V1D	3	0	MPP5	12732	chr14:67770316:+	ATP6V1D	40962	chr14:67770794:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	NEIGHBORS_OVERLAP:+:-:[41448],MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5,ATP6V1D->ATPase_H+_transporting_V1_subunit_D,chr14:67761088-67826982:-	NCIH23_LUNG	1	1	0.0293	FALSE	0	0	0	1	0	FALSE	ACH-000900
NCIH23_LUNG	SBNO2--DAZAP1	3	0	SBNO2	1112	chr19:1174171:-	DAZAP1	32349	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	GTEx_FI:{Skin=[count:2=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Lung=1,Minor_Salivary_Gland=1,Liver=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	NCIH23_LUNG	1	1	0.0293	TRUE	4	1	0	5	0	FALSE	ACH-000900
NCIH23_LUNG	SCAF4--FSCN1	3	0	SCAF4	16796	chr21:33057362:-	FSCN1	26647	chr7:5642888:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1	NCIH23_LUNG	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	YWHAE--CRK	3	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NCIH23_LUNG	1	1	0.0293	TRUE	6	50	7	115	0	FALSE	ACH-000900
NCIH23_LUNG	PEX7--RP3-325F22.3	2	3	PEX7	3426	chr6:137147607:+	RP3-325F22.3	17046	chr6:136958069:+	ONLY_REF_SPLICE	YES	33	0	0.13	1	0.0196	0.0293	PEX7->chr6:137143717-137235075:+,peroxisomal_biogenesis_factor_7,RP3-325F22.3->chr6:136950310-136969137:+	NCIH23_LUNG	0.13	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0196	0.0196	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH23_LUNG	0.8	1	0.0392	FALSE	407	2205	196	549	0	FALSE	ACH-000900
NCIH23_LUNG	ATP6V1D--RP11-403I13.4	2	1	ATP6V1D	13578	chr14:67803364:-	RP11-403I13.4	25604	chr1:149250842:+	ONLY_REF_SPLICE	NO	10	2	0.23	0.6	0.0196	0.0098	ATP6V1D->ATPase_H+_transporting_V1_subunit_D,chr14:67761088-67826982:-,RP11-403I13.4->chr1:149239531-149265510:+	NCIH23_LUNG	0.23	0.6	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	AFMID--TMED2	2	0	AFMID	1117	chr17:76183514:+	TMED2	16462	chr12:124071294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	AFMID->arylformamidase,chr17:76183398-76203782:+,TMED2->chr12:124069078-124083116:+,transmembrane_p24_trafficking_protein_2	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	ATP11A--CUL4A	2	0	ATP11A	34653	chr13:113530255:+	CUL4A	67191	chr13:113917801:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,CUL4A->chr13:113862552-113919399:+,cullin_4A	NCIH23_LUNG	1	1	0.0196	TRUE	0	7	0	5	3	TRUE	ACH-000900
NCIH23_LUNG	BOP1--ADCK5	2	0	BOP1	2339	chr8:145512776:-	ADCK5	17942	chr8:145603076:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	LOCAL_INVERSION:-:+:[81708],BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,ADCK5->aarF_domain_containing_kinase_5,chr8:145596790-145618457:+	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	CCDC14--ZNF638	2	0	CCDC14	1574	chr3:123679991:-	ZNF638	66208	chr2:71655677:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	CUX1--PMEPA1	2	0	CUX1	1415	chr7:101459373:+	PMEPA1	64694	chr20:56234753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,PMEPA1->Oncogene{Bushman},chr20:56223448-56286592:-,prostate_transmembrane_protein,_androgen_induced_1	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	DDAH1--HP1BP3	2	0	DDAH1	5553	chr1:85961849:-	HP1BP3	30606	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	EEF1A1--ZBTB1	2	0	EEF1A1	2745	chr6:74231230:-	ZBTB1	16026	chr14:64988205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1,ZBTB1->chr14:64970430-65000408:+,zinc_finger_and_BTB_domain_containing_1	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	FAM114A1--SPRY2	2	0	FAM114A1	1870	chr4:38870167:+	SPRY2	25371	chr13:80911891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	FAM114A1->chr4:38869298-38947360:+,family_with_sequence_similarity_114_member_A1,SPRY2->chr13:80910111-80915086:-,sprouty_RTK_signaling_antagonist_2	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	FAM179B--CLTC	2	0	FAM179B	3260	chr14:45433670:+	CLTC	35142	chr17:57721637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	FAM179B->chr14:45431411-45543634:+,family_with_sequence_similarity_179_member_B,CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	FUS--SETD1A	2	0	FUS	1118	chr16:31191548:+	SETD1A	15951	chr16:30970038:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	HGNC_GENEFAM,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+,SETD1A->SET_domain_containing_1A,chr16:30968615-30996437:+	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	INO80B--NPM1	2	0	INO80B	2250	chr2:74683399:+	NPM1	19110	chr5:170834704:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	INO80B->INO80_complex_subunit_B,chr2:74682150-74688011:+,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	LINC00472--DNMBP	2	0	LINC00472	4804	chr6:72126113:-	DNMBP	14441	chr10:101728994:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	LINC00472->chr6:72054047-72130472:-,long_intergenic_non-protein_coding_RNA_472,DNMBP->chr10:101635334-101769676:-,dynamin_binding_protein	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	POLR3K--PTMS	2	0	POLR3K	1153	chr16:103476:-	PTMS	10993	chr12:6879087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	RILPL1--SFSWAP	2	0	RILPL1	2696	chr12:124008042:-	SFSWAP	24042	chr12:132212838:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	RILPL1->Rab_interacting_lysosomal_protein-like_1,chr12:123955925-124018265:-,SFSWAP->chr12:132195626-132284282:+,splicing_factor,_suppressor_of_white-apricot_homolog	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	SAMD3--ADSS	2	0	SAMD3	2422	chr6:130634123:-	ADSS	30223	chr1:244587689:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	SAMD3->chr6:130465460-130686570:-,sterile_alpha_motif_domain_containing_3,ADSS->adenylosuccinate_synthase,chr1:244571796-244615436:-	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	SLC6A17--KIAA1407	2	0	SLC6A17	1398	chr1:110693505:+	KIAA1407	27423	chr3:113753995:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	SLC6A17->chr1:110693108-110744824:+,solute_carrier_family_6_member_17,KIAA1407->chr3:113682984-113775460:-	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	TRNT1--LRPPRC	2	0	TRNT1	9961	chr3:3186394:+	LRPPRC	23717	chr2:44202356:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	TRNT1->chr3:3168600-3192563:+,tRNA_nucleotidyl_transferase,_CCA-adding,_1,LRPPRC->chr2:44113647-44223144:-,leucine_rich_pentatricopeptide_repeat_containing	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	UNKL--UBE2I	2	0	UNKL	19748	chr16:1429534:-	UBE2I	39740	chr16:1364021:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	LOCAL_INVERSION:-:+:[36187],UNKL->chr16:1413206-1464752:-,unkempt_family_like_zinc_finger,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	2	0	TRUE	ACH-000900
NCIH23_LUNG	UVSSA--CTBP1	2	0	UVSSA	1924	chr4:1341977:+	CTBP1	38513	chr4:1208261:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	FALSE	ACH-000900
NCIH23_LUNG	UVSSA--CTBP1	2	0	UVSSA	7499	chr4:1349033:+	CTBP1	24040	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH23_LUNG	1	1	0.0196	TRUE	23	5	0	14	0	FALSE	ACH-000900
NCIH23_LUNG	WDR43--PHF10	2	0	WDR43	6646	chr2:29135576:+	PHF10	27115	chr6:170121207:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+,PHF10->PHD_finger_protein_10,chr6:170104001-170124151:-	NCIH23_LUNG	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	CDH2--SMU1	1	3	CDH2	20344	chr18:25562908:-	SMU1	37483	chr9:33048256:-	ONLY_REF_SPLICE	YES	13	200	0.24	0.02	0.0098	0.0293	CDH2->cadherin_2,chr18:25530930-25757410:-,SMU1->chr9:33041762-33076665:-,smu-1_suppressor_of_mec-8_and_unc-52_homolog_(C._elegans)	NCIH23_LUNG	0.02	0.24	0.0391	TRUE	0	0	0	1	0	FALSE	ACH-000900
NCIH23_LUNG	CDH2--SMU1	1	3	CDH2	20344	chr18:25562908:-	SMU1	36315	chr9:33053288:-	ONLY_REF_SPLICE	YES	13	233	0.24	0.02	0.0098	0.0293	CDH2->cadherin_2,chr18:25530930-25757410:-,SMU1->chr9:33041762-33076665:-,smu-1_suppressor_of_mec-8_and_unc-52_homolog_(C._elegans)	NCIH23_LUNG	0.02	0.24	0.0391	TRUE	0	0	0	1	0	FALSE	ACH-000900
NCIH23_LUNG	RALGAPA2--AFF3	1	2	RALGAPA2	1114	chr20:20693018:-	AFF3	67068	chr2:100368763:-	ONLY_REF_SPLICE	YES	5	11	0.38	0.21	0.0098	0.0196	RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-,AFF3->AF4/FMR2_family_member_3,Oncogene{Bushman},chr2:100162323-100759201:-	NCIH23_LUNG	0.21	0.38	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	RP11-20I20.2--CTBP1	1	2	RP11-20I20.2	1114	chr4:1107540:+	CTBP1	8481	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	28	1	0.1	0.0098	0.0196	LOCAL_INVERSION:+:-:[78471],RP11-20I20.2->chr4:1107427-1126765:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH23_LUNG	0.1	1	0.0294	TRUE	0	1	1	6	1	TRUE	ACH-000900
NCIH23_LUNG	SCAF4--TIAM1	1	2	SCAF4	16796	chr21:33057362:-	TIAM1	27419	chr21:32711737:-	ONLY_REF_SPLICE	YES	78	4	0.04	0.43	0.0098	0.0196	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-	NCIH23_LUNG	0.04	0.43	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	ATP6V1D--RP11-403I13.4	1	1	ATP6V1D	13578	chr14:67803364:-	RP11-403I13.4	25843	chr1:149251081:+	ONLY_REF_SPLICE	YES	10	2	0.17	0.5	0.0098	0.0098	ATP6V1D->ATPase_H+_transporting_V1_subunit_D,chr14:67761088-67826982:-,RP11-403I13.4->chr1:149239531-149265510:+	NCIH23_LUNG	0.17	0.5	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000900
NCIH23_LUNG	CAMKMT--THADA	1	1	CAMKMT	4731	chr2:44617444:+	THADA	59246	chr2:43726094:-	ONLY_REF_SPLICE	YES	30	61	0.06	0.03	0.0098	0.0098	CAMKMT->calmodulin-lysine_N-methyltransferase,chr2:44589089-44999731:+,THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-	NCIH23_LUNG	0.03	0.06	0.0196	TRUE	0	0	0	1	0	FALSE	ACH-000900
NCIH23_LUNG	CTNNAL1--TMEM245	1	1	CTNNAL1	13786	chr9:111727658:-	TMEM245	29848	chr9:111849622:-	ONLY_REF_SPLICE	YES	361	100	0.01	0.02	0.0098	0.0098	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_REARRANGEMENT:-:[1623],CTNNAL1->catenin_alpha_like_1,chr9:111704851-111775809:-,TMEM245->chr9:111777432-111882225:-,transmembrane_protein_245	NCIH23_LUNG	0.01	0.02	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000900
NCIH23_LUNG	DANCR--GNB1	1	1	DANCR	1530	chr4:53579126:+	GNB1	9431	chr1:1770677:-	ONLY_REF_SPLICE	YES	830	36	0	0.05	0.0098	0.0098	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	NCIH23_LUNG	0	0.05	0.0196	FALSE	0	0	0	8	0	FALSE	ACH-000900
NCIH23_LUNG	FMNL3--MCM4	1	1	FMNL3	11801	chr12:50047975:-	MCM4	37226	chr8:48879925:+	ONLY_REF_SPLICE	YES	34	533	0.06	0	0.0098	0.0098	FMNL3->Oncogene{Bushman},chr12:50031724-50101948:-,formin_like_3,MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4	NCIH23_LUNG	0	0.06	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000900
NCIH23_LUNG	GSE1--TUBB3	1	1	GSE1	2365	chr16:85647004:+	TUBB3	33848	chr16:89998979:+	ONLY_REF_SPLICE	NO	58	419	0.03	0	0.0098	0.0098	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,TUBB3->chr16:89985573-90002500:+,chr16:89987800-90005169:+,tubulin_beta_3_class_III	NCIH23_LUNG	0	0.03	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000900
NCIH23_LUNG	RNF126--BSG	1	1	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	211	1823	0.01	0	0.0098	0.0098	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	NCIH23_LUNG	0	0.01	0.0196	FALSE	0	2	0	12	0	FALSE	ACH-000900
NCIH23_LUNG	RPL23AP79--HNRNPUL1	1	1	RPL23AP79	2311	chr19:59086955:+	HNRNPUL1	18738	chr19:41774128:+	ONLY_REF_SPLICE	YES	64	315	0.03	0.01	0.0098	0.0098	RPL23AP79->chr19:59084870-59111168:+,ribosomal_protein_L23a_pseudogene_79,HNRNPUL1->chr19:41768401-41813503:+,heterogeneous_nuclear_ribonucleoprotein_U_like_1	NCIH23_LUNG	0.01	0.03	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000900
NCIH23_LUNG	SETD8--CDK2AP1	1	1	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	10	67	0.17	0.03	0.0098	0.0098	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	NCIH23_LUNG	0.03	0.17	0.0196	TRUE	0	0	0	18	0	FALSE	ACH-000900
NCIH23_LUNG	SND1--RPS21	1	1	SND1	24978	chr7:127631109:+	RPS21	40832	chr20:60962377:+	ONLY_REF_SPLICE	YES	279	24	0.01	0.08	0.0098	0.0098	SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1,RPS21->chr20:60962172-60963576:+,ribosomal_protein_S21	NCIH23_LUNG	0.01	0.08	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000900
NCIH23_LUNG	XRCC5--RPS27A	1	1	XRCC5	25424	chr2:217069119:+	RPS27A	31237	chr2:55459944:+	ONLY_REF_SPLICE	YES	1020	116	0	0.02	0.0098	0.0098	GTEx&tcga_normals:1/3694=0.03%,XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	NCIH23_LUNG	0	0.02	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000900
JHUEM7_ENDOMETRIUM	HIF1A--RP11-47I22.3	132	81	HIF1A	4846	chr14:62187290:+	RP11-47I22.3	28952	chr14:62124323:+	ONLY_REF_SPLICE	YES	676	38	0.24	0.85	1.8076	1.1092	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	JHUEM7_ENDOMETRIUM	0.24	0.85	2.9168	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	PHLDB1--ARCN1	104	26	PHLDB1	21391	chr11:118509969:+	ARCN1	45989	chr11:118454524:+	ONLY_REF_SPLICE	YES	20	151	0.87	0.46	1.4242	0.356	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,LOCAL_REARRANGEMENT:+:[3407],PHLDB1->chr11:118477155-118528741:+,pleckstrin_homology_like_domain_family_B_member_1,ARCN1->archain_1,chr11:118443105-118473748:+	JHUEM7_ENDOMETRIUM	0.46	0.87	1.7802	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	CLTC--VMP1	95	40	CLTC	1316	chr17:57697534:+	VMP1	53132	chr17:57915656:+	ONLY_REF_SPLICE	YES	146	99	0.48	0.58	1.3009	0.5478	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	JHUEM7_ENDOMETRIUM	0.48	0.58	1.8487	FALSE	0	6	0	10	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	SEC14L2--UQCR10	80	13	SEC14L2	10751	chr22:30812076:+	UQCR10	19919	chr22:30165667:+	ONLY_REF_SPLICE	YES	22	300	0.81	0.24	1.0955	0.178	SEC14L2->SEC14_like_lipid_binding_2,chr22:30792846-30821305:+,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	JHUEM7_ENDOMETRIUM	0.24	0.81	1.2735	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-TA--MT-TC	80	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0955	0.1369	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM7_ENDOMETRIUM	1	1	1.2324	FALSE	462	80	0	856	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-ND6--MT-TE	69	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9449	0.0959	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM7_ENDOMETRIUM	1	1	1.0408	FALSE	499	1288	110	792	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	TIMM23B--LINC00843	53	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7258	0.2876	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHUEM7_ENDOMETRIUM	1	1	1.0134	TRUE	508	994	45	981	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	HIF1A--RP11-47I22.3	29	108	HIF1A	5928	chr14:62188372:+	RP11-47I22.3	25003	chr14:62117680:+	ONLY_REF_SPLICE	YES	882	66	0.13	0.67	0.3971	1.4789	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	JHUEM7_ENDOMETRIUM	0.13	0.67	1.876	TRUE	0	0	0	2	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-ND6--MT-TE	46	18	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.96	1	0.6299	0.2465	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM7_ENDOMETRIUM	0.96	1	0.8764	FALSE	499	1288	110	792	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	HIF1A--RP11-47I22.3	20	85	HIF1A	4846	chr14:62187290:+	RP11-47I22.3	28150	chr14:62123521:+	ONLY_REF_SPLICE	YES	676	32	0.13	0.77	0.2739	1.164	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	JHUEM7_ENDOMETRIUM	0.13	0.77	1.4379	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-ND6--MT-TE	38	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5204	0.0959	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM7_ENDOMETRIUM	1	1	0.6163	FALSE	499	1288	110	792	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	TIMM23--RP11-464F9.1	38	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	171	2	0.19	0.95	0.5204	0.0274	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JHUEM7_ENDOMETRIUM	0.19	0.95	0.5478	TRUE	519	3926	326	965	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	SEC14L2--HORMAD2	32	24	SEC14L2	3862	chr22:30795707:+	HORMAD2	20765	chr22:30489905:+	ONLY_REF_SPLICE	YES	81	0	0.41	1	0.4382	0.3287	SEC14L2->SEC14_like_lipid_binding_2,chr22:30792846-30821305:+,HORMAD2->HORMA_domain_containing_2,chr22:30476163-30573064:+	JHUEM7_ENDOMETRIUM	0.41	1	0.7669	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	HIF1A--RP11-47I22.3	1	108	HIF1A	6097	chr14:62188541:+	RP11-47I22.3	25003	chr14:62117680:+	ONLY_REF_SPLICE	YES	721	66	0.13	0.62	0.0137	1.4789	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	JHUEM7_ENDOMETRIUM	0.13	0.62	1.4926	TRUE	0	0	0	2	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	HIF1A--RP11-47I22.3	1	82	HIF1A	15201	chr14:62207906:+	RP11-47I22.3	28952	chr14:62124323:+	ONLY_REF_SPLICE	YES	1228	38	0.06	0.69	0.0137	1.1229	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	JHUEM7_ENDOMETRIUM	0.06	0.69	1.1366	TRUE	0	0	0	2	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	FAM228B--UBXN2A	18	4	FAM228B	3801	chr2:24303825:+	UBXN2A	31632	chr2:24199839:+	ONLY_REF_SPLICE	YES	0	28	1	0.44	0.2465	0.0548	LOCAL_REARRANGEMENT:+:[71617],FAM228B->chr2:24299396-24392509:+,family_with_sequence_similarity_228_member_B,UBXN2A->UBX_domain_protein_2A,chr2:24150155-24227779:+	JHUEM7_ENDOMETRIUM	0.44	1	0.3013	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	SEC14L2--HORMAD2	13	14	SEC14L2	1314	chr22:30793159:+	HORMAD2	20765	chr22:30489905:+	ONLY_REF_SPLICE	YES	73	0	0.27	1	0.178	0.1917	SEC14L2->SEC14_like_lipid_binding_2,chr22:30792846-30821305:+,HORMAD2->HORMA_domain_containing_2,chr22:30476163-30573064:+	JHUEM7_ENDOMETRIUM	0.27	1	0.3697	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	ZNF654--HMGB2	16	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2191	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JHUEM7_ENDOMETRIUM	1	1	0.2191	TRUE	0	0	0	518	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	CAPZA2--MET	15	3	CAPZA2	3371	chr7:116502704:+	MET	27625	chr7:116339125:+	ONLY_REF_SPLICE	YES	45	151	0.29	0.11	0.2054	0.0411	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	JHUEM7_ENDOMETRIUM	0.11	0.29	0.2465	TRUE	0	0	0	3	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-ND6--MT-TE	4	47	MT-ND6	1262	chrM:14412:-	MT-TE	4528	chrM:14740:-	INCL_NON_REF_SPLICE	YES	5	0	0.91	1	0.0548	0.6436	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM7_ENDOMETRIUM	0.91	1	0.6984	FALSE	499	1288	110	792	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-ND6--MT-TE	8	29	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.1096	0.3971	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM7_ENDOMETRIUM	0.93	1	0.5067	FALSE	499	1288	110	792	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	HIF1A--RP11-47I22.3	3	46	HIF1A	4767	chr14:62187211:+	RP11-47I22.3	28952	chr14:62124323:+	INCL_NON_REF_SPLICE	YES	740	38	0.06	0.56	0.0411	0.6299	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	JHUEM7_ENDOMETRIUM	0.06	0.56	0.671	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	CAPZA2--MET	12	3	CAPZA2	3371	chr7:116502704:+	MET	26575	chr7:116335804:+	ONLY_REF_SPLICE	YES	45	159	0.25	0.09	0.1643	0.0411	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	JHUEM7_ENDOMETRIUM	0.09	0.25	0.2054	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-ND6--MT-TE	6	23	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0822	0.315	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM7_ENDOMETRIUM	1	1	0.3972	FALSE	499	1288	110	792	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-TA--MT-TC	10	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1369	0.0959	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM7_ENDOMETRIUM	1	1	0.2328	FALSE	462	80	0	856	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-ND6--MT-TE	4	30	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	5	0	0.87	1	0.0548	0.4108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM7_ENDOMETRIUM	0.87	1	0.4656	FALSE	499	1288	110	792	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	PODXL--MT-ND4L	11	2	PODXL	8405	chr7:131190729:-	MT-ND4L	16755	chrM:10470:+	INCL_NON_REF_SPLICE	YES	373	0	0.03	1	0.1506	0.0274	PODXL->chr7:131185021-131242976:-,podocalyxin_like,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM7_ENDOMETRIUM	0.03	1	0.178	FALSE	0	0	0	5	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	RP11-395P17.3--CIZ1	10	5	RP11-395P17.3	4942	chr9:130875652:-	CIZ1	21788	chr9:130932386:-	INCL_NON_REF_SPLICE	YES	7	66	0.68	0.19	0.1369	0.0685	LOCAL_REARRANGEMENT:-:[47330],RP11-395P17.3->chr9:130873450-130881013:-,CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-	JHUEM7_ENDOMETRIUM	0.19	0.68	0.2054	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	C15orf57--CBX3	9	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	26	18	0.37	0.45	0.1232	0.0822	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JHUEM7_ENDOMETRIUM	0.37	0.45	0.2054	TRUE	267	562	48	632	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-ND6--MT-TE	6	18	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.0822	0.2465	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM7_ENDOMETRIUM	0.86	1	0.3287	FALSE	499	1288	110	792	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1232	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM7_ENDOMETRIUM	1	1	0.1232	FALSE	462	80	0	856	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-TA--MT-TC	6	12	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0822	0.1643	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM7_ENDOMETRIUM	1	1	0.2465	FALSE	462	80	0	856	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	APP--MT-CO3	7	6	APP	11652	chr21:27394197:-	MT-CO3	32390	chrM:9421:+	INCL_NON_REF_SPLICE	YES	2394	17570	0.01	0	0.0959	0.0822	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	JHUEM7_ENDOMETRIUM	0	0.01	0.1781	FALSE	0	0	0	26	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-ND6--MT-TE	3	19	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0.2602	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM7_ENDOMETRIUM	1	1	0.3013	FALSE	499	1288	110	792	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	RP11-395P17.3--CIZ1	6	7	RP11-395P17.3	6633	chr9:130873961:-	CIZ1	21788	chr9:130932386:-	INCL_NON_REF_SPLICE	YES	12	66	0.52	0.16	0.0822	0.0959	LOCAL_REARRANGEMENT:-:[47330],RP11-395P17.3->chr9:130873450-130881013:-,CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-	JHUEM7_ENDOMETRIUM	0.16	0.52	0.1781	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-ND6--MT-TE	3	18	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0411	0.2465	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM7_ENDOMETRIUM	0.88	1	0.2876	FALSE	499	1288	110	792	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	PFKL--MT-ND4L	7	1	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	242	0	0.03	1	0.0959	0.0137	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHUEM7_ENDOMETRIUM	0.03	1	0.1096	FALSE	0	0	0	33	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	RP11-123O10.4--GRIP1	6	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0822	0.0685	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHUEM7_ENDOMETRIUM	0.92	1	0.1507	FALSE	416	2512	207	587	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	ZHX3--CHD6	7	1	ZHX3	5816	chr20:39897630:-	CHD6	65880	chr20:40045434:-	ONLY_REF_SPLICE	YES	4	15	0.67	0.35	0.0959	0.0137	LOCAL_REARRANGEMENT:-:[84429],ZHX3->chr20:39807088-39946312:-,zinc_fingers_and_homeoboxes_3,CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6	JHUEM7_ENDOMETRIUM	0.35	0.67	0.1096	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-ND6--MT-TE	6	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0822	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM7_ENDOMETRIUM	1	1	0.0822	FALSE	499	1288	110	792	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-ND6--MT-TE	6	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0822	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM7_ENDOMETRIUM	1	1	0.0822	FALSE	499	1288	110	792	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-TA--MT-TY	6	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0822	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	JHUEM7_ENDOMETRIUM	1	1	0.0822	FALSE	13	214	14	42	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0822	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHUEM7_ENDOMETRIUM	1	1	0.0822	FALSE	292	1546	117	613	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	APP--MT-CO3	4	6	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	2158	17211	0	0	0.0548	0.0822	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	JHUEM7_ENDOMETRIUM	0	0	0.137	FALSE	0	0	0	26	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-ND6--MT-TE	3	8	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0411	0.1096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM7_ENDOMETRIUM	0.85	1	0.1507	FALSE	499	1288	110	792	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-ND6--MT-TE	5	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0685	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM7_ENDOMETRIUM	1	1	0.0685	FALSE	499	1288	110	792	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	NRIP1--AF127936.7	5	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0685	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHUEM7_ENDOMETRIUM	1	1	0.0685	FALSE	125	705	46	456	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	RPSAP52--HMGA2	5	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0685	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	JHUEM7_ENDOMETRIUM	1	1	0.0685	FALSE	0	59	0	125	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-TA--MT-TC	4	3	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0.0411	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM7_ENDOMETRIUM	1	1	0.0959	FALSE	462	80	0	856	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	TKT--DCP1A	3	6	TKT	17212	chr3:53259767:-	DCP1A	25726	chr3:53353500:-	ONLY_REF_SPLICE	NO	36	14	0.2	0.39	0.0411	0.0822	LOCAL_REARRANGEMENT:-:[27379],TKT->chr3:53258723-53290068:-,transketolase,DCP1A->chr3:53317447-53381654:-,decapping_mRNA_1A	JHUEM7_ENDOMETRIUM	0.2	0.39	0.1233	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	TKT--DCP1A	3	6	TKT	17212	chr3:53259767:-	DCP1A	24671	chr3:53372172:-	ONLY_REF_SPLICE	YES	36	16	0.2	0.36	0.0411	0.0822	LOCAL_REARRANGEMENT:-:[27379],TKT->chr3:53258723-53290068:-,transketolase,DCP1A->chr3:53317447-53381654:-,decapping_mRNA_1A	JHUEM7_ENDOMETRIUM	0.2	0.36	0.1233	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	PHLDB1--ARCN1	1	13	PHLDB1	21141	chr11:118509719:+	ARCN1	45989	chr11:118454524:+	ONLY_REF_SPLICE	NO	27	151	0.34	0.08	0.0137	0.178	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,LOCAL_REARRANGEMENT:+:[3407],PHLDB1->chr11:118477155-118528741:+,pleckstrin_homology_like_domain_family_B_member_1,ARCN1->archain_1,chr11:118443105-118473748:+	JHUEM7_ENDOMETRIUM	0.08	0.34	0.1917	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-TA--MT-TY	4	0	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	JHUEM7_ENDOMETRIUM	1	1	0.0548	FALSE	13	214	14	42	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	NRIP1--AF127936.7	3	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.15	1	0.0411	0.0137	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHUEM7_ENDOMETRIUM	0.15	1	0.0548	FALSE	164	806	69	479	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-TA--MT-TY	3	0	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	JHUEM7_ENDOMETRIUM	1	1	0.0411	FALSE	13	214	14	42	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	MT-TW--MT-ND2	3	0	MT-TW	1004	chrM:5515:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	JHUEM7_ENDOMETRIUM	1	1	0.0411	FALSE	14	0	0	19	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	PHLDB1--ARCN1	2	4	PHLDB1	19739	chr11:118506266:+	ARCN1	45989	chr11:118454524:+	ONLY_REF_SPLICE	YES	35	151	0.15	0.04	0.0274	0.0548	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,LOCAL_REARRANGEMENT:+:[3407],PHLDB1->chr11:118477155-118528741:+,pleckstrin_homology_like_domain_family_B_member_1,ARCN1->archain_1,chr11:118443105-118473748:+	JHUEM7_ENDOMETRIUM	0.04	0.15	0.0822	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	RP11-47I22.3--PRKCH	3	0	RP11-47I22.3	1221	chr14:62037478:+	PRKCH	31250	chr14:61919944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0411	0	YOSHIHARA_TCGA_num_samples[BRCA:2|KIRC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[19564],RP11-47I22.3->chr14:62037258-62125414:+,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	JHUEM7_ENDOMETRIUM	1	1	0.0411	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	SEC14L2--UQCR10	2	2	SEC14L2	9422	chr22:30806668:+	UQCR10	19919	chr22:30165667:+	ONLY_REF_SPLICE	YES	34	300	0.11	0.01	0.0274	0.0274	SEC14L2->SEC14_like_lipid_binding_2,chr22:30792846-30821305:+,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	JHUEM7_ENDOMETRIUM	0.01	0.11	0.0548	FALSE	0	0	0	1	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	TKT--DCP1A	2	2	TKT	16207	chr3:53260772:-	DCP1A	25726	chr3:53353500:-	ONLY_REF_SPLICE	YES	1285	14	0	0.22	0.0274	0.0274	LOCAL_REARRANGEMENT:-:[27379],TKT->chr3:53258723-53290068:-,transketolase,DCP1A->chr3:53317447-53381654:-,decapping_mRNA_1A	JHUEM7_ENDOMETRIUM	0	0.22	0.0548	FALSE	0	0	0	1	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	PPFIBP1--SMCO2	2	1	PPFIBP1	1935	chr12:27677298:+	SMCO2	45492	chr12:27627719:+	ONLY_REF_SPLICE	YES	62	0	0.05	1	0.0274	0.0137	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	JHUEM7_ENDOMETRIUM	0.05	1	0.0411	TRUE	0	2	0	3	1	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0274	0.0137	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHUEM7_ENDOMETRIUM	0.75	1	0.0411	TRUE	62	24	1	171	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	CREB1--SLC30A9	2	0	CREB1	1398	chr2:208394858:+	SLC30A9	37111	chr4:42065003:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	CREB1->Oncogene{Bushman},cAMP_responsive_element_binding_protein_1,chr2:208394461-208468155:+,SLC30A9->chr4:41992489-42092474:+,solute_carrier_family_30_member_9	JHUEM7_ENDOMETRIUM	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	RP11-47I22.3--PRKCH	2	0	RP11-47I22.3	1221	chr14:62037478:+	PRKCH	37424	chr14:61952220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	YOSHIHARA_TCGA_num_samples[BRCA:2|KIRC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[19564],RP11-47I22.3->chr14:62037258-62125414:+,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	JHUEM7_ENDOMETRIUM	1	1	0.0274	TRUE	0	2	0	2	2	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	TAF12--TRNAU1AP	2	0	TAF12	4846	chr1:28944465:-	TRNAU1AP	19658	chr1:28893806:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	LOCAL_INVERSION:-:+:[10784],TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-,TRNAU1AP->chr1:28879597-28905051:+,tRNA_selenocysteine_1_associated_protein_1	JHUEM7_ENDOMETRIUM	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	TKT--DCP1A	1	3	TKT	17212	chr3:53259767:-	DCP1A	26793	chr3:53346409:-	ONLY_REF_SPLICE	NO	36	16	0.1	0.2	0.0137	0.0411	LOCAL_REARRANGEMENT:-:[27379],TKT->chr3:53258723-53290068:-,transketolase,DCP1A->chr3:53317447-53381654:-,decapping_mRNA_1A	JHUEM7_ENDOMETRIUM	0.1	0.2	0.0548	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	ZHX3--CHD6	1	2	ZHX3	6977	chr20:39896103:-	CHD6	65880	chr20:40045434:-	ONLY_REF_SPLICE	NO	9	15	0.25	0.17	0.0137	0.0274	LOCAL_REARRANGEMENT:-:[84429],ZHX3->chr20:39807088-39946312:-,zinc_fingers_and_homeoboxes_3,CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6	JHUEM7_ENDOMETRIUM	0.17	0.25	0.0411	TRUE	0	0	0	1	0	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	CAPZA2--MET	1	1	CAPZA2	3371	chr7:116502704:+	MET	31541	chr7:116371722:+	ONLY_REF_SPLICE	NO	45	276	0.04	0.01	0.0137	0.0137	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	JHUEM7_ENDOMETRIUM	0.01	0.04	0.0274	FALSE	0	0	0	2	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	DAPK1--EMC3	1	1	DAPK1	2912	chr9:90114054:+	EMC3	41389	chr3:10019130:-	ONLY_REF_SPLICE	NO	40	143	0.05	0.01	0.0137	0.0137	DAPK1->Oncogene{Bushman},chr9:90112143-90323548:+,death_associated_protein_kinase_1,EMC3->ER_membrane_protein_complex_subunit_3,chr3:10004221-10052800:-	JHUEM7_ENDOMETRIUM	0.01	0.05	0.0274	FALSE	0	0	0	1	0	FALSE	ACH-000993
JHUEM7_ENDOMETRIUM	RP11-47I22.3--PRKCH	1	1	RP11-47I22.3	1221	chr14:62037478:+	PRKCH	26390	chr14:61909829:+	ONLY_REF_SPLICE	YES	70	4	0.03	0.33	0.0137	0.0137	YOSHIHARA_TCGA_num_samples[BRCA:2|KIRC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[19564],RP11-47I22.3->chr14:62037258-62125414:+,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	JHUEM7_ENDOMETRIUM	0.03	0.33	0.0274	TRUE	0	2	0	1	2	TRUE	ACH-000993
JHUEM7_ENDOMETRIUM	SLC39A8--ANKRD17	1	1	SLC39A8	5544	chr4:103265601:-	ANKRD17	24984	chr4:74043250:-	ONLY_REF_SPLICE	NO	858	7	0	0.22	0.0137	0.0137	SLC39A8->chr4:103172198-103352415:-,solute_carrier_family_39_member_8,ANKRD17->ankyrin_repeat_domain_17,chr4:73939093-74124515:-	JHUEM7_ENDOMETRIUM	0	0.22	0.0274	FALSE	0	0	0	1	0	FALSE	ACH-000993
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	12378	8548	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	217	321	0.99	0.98	144.0443	99.4741	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0.98	0.99	243.5184	TRUE	0	0	0	32	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	2616	1422	TATDN1	8556	chr8:125527987:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	81	3	0.98	1	30.4427	16.548	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.98	1	46.9907	TRUE	0	0	0	6	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	11	8554	FGFR2	30109	chr10:123241584:-	COL14A1	77744	chr8:121301847:+	INCL_NON_REF_SPLICE	YES	154	321	0.98	0.96	0.128	99.5439	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0.96	0.98	99.6719	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	945	5	TATDN1	1434	chr8:125551266:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	7	3	0.99	1	10.9971	0.0582	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.99	1	11.0553	TRUE	0	0	0	2	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	4	2569	FGFR2	29001	chr10:123243212:-	COL14A1	78903	chr8:121309750:+	ONLY_REF_SPLICE	YES	217	3840	0.92	0.4	0.0465	29.8958	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0.4	0.92	29.9423	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	282	1110	TATDN1	8415	chr8:125528128:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	80	3	0.95	1	3.2817	12.9172	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.95	1	16.1989	TRUE	0	0	0	6	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	PCAT1--RP11-382A18.2	305	103	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	24	0	0.94	1	3.5493	1.1986	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	NCIH716_LARGE_INTESTINE	0.94	1	4.7479	TRUE	4	84	1	46	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	248	308	TATDN1	7195	chr8:125531059:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	802	3	0.41	0.99	2.886	3.5842	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.41	0.99	6.4702	TRUE	0	0	0	2	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	3	1245	FGFR2	29001	chr10:123243212:-	COL14A1	79981	chr8:121312971:+	ONLY_REF_SPLICE	YES	217	6523	0.85	0.16	0.0349	14.4882	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0.16	0.85	14.5231	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	20	519	FGFR2	29001	chr10:123243212:-	COL14A1	81068	chr8:121322248:+	ONLY_REF_SPLICE	YES	217	7228	0.71	0.07	0.2327	6.0397	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0.07	0.71	6.2724	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TIMM23B--LINC00843	122	61	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.4197	0.7099	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH716_LARGE_INTESTINE	0.99	1	2.1296	TRUE	508	994	45	981	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	11	383	TATDN1	7271	chr8:125530983:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	858	3	0.31	0.99	0.128	4.457	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.31	0.99	4.585	TRUE	0	0	0	2	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	LINC01014--KCNMB2	81	21	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	35	13	0.74	0.89	0.9426	0.2444	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH716_LARGE_INTESTINE	0.74	0.89	1.187	FALSE	11	60	26	37	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	3	330	TATDN1	8556	chr8:125527987:-	DEPTOR	25556	chr8:121015216:+	ONLY_REF_SPLICE	YES	81	1266	0.8	0.21	0.0349	3.8402	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.21	0.8	3.8751	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-TA--MT-TC	76	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8844	0.0815	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH716_LARGE_INTESTINE	1	1	0.9659	FALSE	462	80	0	856	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	TIMM23--RP11-464F9.1	69	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	219	1	0.26	0.99	0.803	0.0698	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH716_LARGE_INTESTINE	0.26	0.99	0.8728	TRUE	519	3926	326	965	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	NUCKS1--PM20D1	56	32	NUCKS1	3476	chr1:205696828:-	PM20D1	24456	chr1:205801894:-	ONLY_REF_SPLICE	YES	1076	0	0.08	1	0.6517	0.3724	LOCAL_REARRANGEMENT:-:[77746],NUCKS1->chr1:205681947-205719404:-,nuclear_casein_kinase_and_cyclin-dependent_kinase_substrate_1,PM20D1->chr1:205797150-205819260:-,peptidase_M20_domain_containing_1	NCIH716_LARGE_INTESTINE	0.08	1	1.0241	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	3	218	TATDN1	7195	chr8:125531059:-	DEPTOR	24414	chr8:121013808:+	INCL_NON_REF_SPLICE	YES	802	4	0.22	0.98	0.0349	2.5369	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.22	0.98	2.5718	TRUE	0	0	0	2	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	4	181	TATDN1	5617	chr8:125534392:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	884	3	0.17	0.98	0.0465	2.1063	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.17	0.98	2.1528	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	RP11-680G10.1--GSE1	46	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	189	1	0.23	0.5353	0.1047	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH716_LARGE_INTESTINE	0.23	1	0.64	TRUE	465	1949	224	605	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	11	140	TATDN1	4831	chr8:125535178:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	532	3	0.22	0.98	0.128	1.6292	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.22	0.98	1.7572	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	UBE3A--ATP10A	38	19	UBE3A	1493	chr15:25683636:-	ATP10A	28363	chr15:25981288:-	ONLY_REF_SPLICE	YES	61	0	0.48	1	0.4422	0.2211	UBE3A->Oncogene{Bushman},chr15:25582381-25684128:-,ubiquitin_protein_ligase_E3A,ATP10A->ATPase_phospholipid_transporting_10A_(putative),chr15:25922420-26110317:-	NCIH716_LARGE_INTESTINE	0.48	1	0.6633	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	34	12	TATDN1	1531	chr8:125551169:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	44	3	0.51	0.94	0.3957	0.1396	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.51	0.94	0.5353	TRUE	0	0	0	2	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	LINC01014--KCNMB2	30	22	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	35	12	0.6	0.81	0.3491	0.256	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH716_LARGE_INTESTINE	0.6	0.81	0.6051	FALSE	12	33	18	33	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-ND4L	16	72	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	5592	0	0.02	1	0.1862	0.8379	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH716_LARGE_INTESTINE	0.02	1	1.0241	FALSE	344	827	44	306	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	96	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	7	0	0.94	1	0.0698	1.1172	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH716_LARGE_INTESTINE	0.94	1	1.187	FALSE	344	826	44	306	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND6--MT-TE	26	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.3026	0.0698	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH716_LARGE_INTESTINE	0.97	1	0.3724	FALSE	499	1288	110	792	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	96	MT-ND4	1192	chrM:10951:+	MT-ND4L	5529	chrM:10620:+	INCL_NON_REF_SPLICE	NO	20	0	0.83	1	0.0349	1.1172	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH716_LARGE_INTESTINE	0.83	1	1.1521	FALSE	344	826	44	306	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND6--MT-TE	26	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3026	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH716_LARGE_INTESTINE	1	1	0.3026	FALSE	499	1288	110	792	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	65	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	56	0	0.56	1	0.0815	0.7564	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH716_LARGE_INTESTINE	0.56	1	0.8379	FALSE	344	827	44	306	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	RP11-680G10.1--GSE1	19	15	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	23	1	0.6	0.2211	0.1746	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH716_LARGE_INTESTINE	0.6	1	0.3957	TRUE	458	1351	185	561	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-ND4L	17	20	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	5475	0	0.01	1	0.1978	0.2327	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH716_LARGE_INTESTINE	0.01	1	0.4305	FALSE	344	827	44	306	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	64	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.96	1	0.0582	0.7448	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH716_LARGE_INTESTINE	0.96	1	0.803	FALSE	344	821	44	306	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	71	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	7	0	0.91	1	0.0349	0.8262	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH716_LARGE_INTESTINE	0.91	1	0.8611	FALSE	344	826	44	306	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-CO3--MT-ATP6	9	46	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	12	0.93	0.82	0.1047	0.5353	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH716_LARGE_INTESTINE	0.82	0.93	0.64	FALSE	189	492	56	216	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	ZNF654--HMGB2	20	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2327	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH716_LARGE_INTESTINE	1	1	0.2327	TRUE	0	0	0	518	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	IDS--CXorf40A	17	10	IDS	20001	chrX:148571845:-	CXorf40A	33284	chrX:148623564:+	ONLY_REF_SPLICE	YES	222	49	0.11	0.36	0.1978	0.1164	LOCAL_INVERSION:-,chrX:+:[6430],IDS->chrX:148558521-148615470:-,chrX:148564074-148615470:-,iduronate_2-sulfatase,CXorf40A->chrX:148621900-148632055:+,chromosome_X_open_reading_frame_40A	NCIH716_LARGE_INTESTINE	0.11	0.36	0.3142	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND6--MT-TE	19	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2211	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH716_LARGE_INTESTINE	1	1	0.2211	FALSE	499	1288	110	792	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ATP6--MT-CO2	18	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	54	2	0.28	0.91	0.2095	0.0349	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH716_LARGE_INTESTINE	0.28	0.91	0.2444	FALSE	59	21	0	114	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	4	54	FGFR2	29001	chr10:123243212:-	COL14A1	84683	chr8:121344380:+	ONLY_REF_SPLICE	YES	217	8163	0.21	0.01	0.0465	0.6284	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0.01	0.21	0.6749	TRUE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	53	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	7	43	0.89	0.57	0.0465	0.6168	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH716_LARGE_INTESTINE	0.57	0.89	0.6633	FALSE	189	492	56	216	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	54	MT-CO3	1220	chrM:9426:+	MT-ATP6	5072	chrM:8814:+	INCL_NON_REF_SPLICE	YES	8	27	0.88	0.68	0.0349	0.6284	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH716_LARGE_INTESTINE	0.68	0.88	0.6633	FALSE	189	492	56	216	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	46	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	12	0.93	0.81	0.0465	0.5353	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH716_LARGE_INTESTINE	0.81	0.93	0.5818	FALSE	189	492	56	216	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-TA--MT-TC	13	9	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1513	0.1047	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH716_LARGE_INTESTINE	1	1	0.256	FALSE	462	80	0	856	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	48	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	4	49	0.93	0.51	0.0349	0.5586	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH716_LARGE_INTESTINE	0.51	0.93	0.5935	FALSE	189	492	56	216	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-TA--MT-TC	14	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1629	0.0116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH716_LARGE_INTESTINE	1	1	0.1745	FALSE	462	80	0	856	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	NUCKS1--PM20D1	11	10	NUCKS1	3476	chr1:205696828:-	PM20D1	25625	chr1:205799507:-	ONLY_REF_SPLICE	YES	1076	7	0.02	0.75	0.128	0.1164	LOCAL_REARRANGEMENT:-:[77746],NUCKS1->chr1:205681947-205719404:-,nuclear_casein_kinase_and_cyclin-dependent_kinase_substrate_1,PM20D1->chr1:205797150-205819260:-,peptidase_M20_domain_containing_1	NCIH716_LARGE_INTESTINE	0.02	0.75	0.2444	TRUE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	PLXDC1--TAF13	13	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1513	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH716_LARGE_INTESTINE	1	1	0.1513	TRUE	7	10	0	216	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	25	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	10752	0	0	1	0.0698	0.2909	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH716_LARGE_INTESTINE	0	1	0.3607	FALSE	328	800	43	304	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	36	MT-CO3	1072	chrM:9278:+	MT-ATP6	5069	chrM:8811:+	INCL_NON_REF_SPLICE	YES	0	29	1	0.57	0.0349	0.4189	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH716_LARGE_INTESTINE	0.57	1	0.4538	FALSE	189	492	56	216	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	RP11-155G15.2--RP11-1E3.1	10	4	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1164	0.0465	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH716_LARGE_INTESTINE	1	1	0.1629	FALSE	46	201	11	112	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-RNR2	9	4	MT-ND4	1209	chrM:10968:+	MT-RNR2	5415	chrM:1707:+	INCL_NON_REF_SPLICE	NO	11633	0	0	1	0.1047	0.0465	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH716_LARGE_INTESTINE	0	1	0.1512	FALSE	13	19	3	21	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	PCAT1--RP11-382A18.2	9	3	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	12062	chr8:128404749:+	ONLY_REF_SPLICE	YES	24	8	0.33	0.6	0.1047	0.0349	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	NCIH716_LARGE_INTESTINE	0.33	0.6	0.1396	TRUE	0	3	0	1	3	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	PVT1--MRPL13	8	7	PVT1	1202	chr8:128806980:+	MRPL13	32125	chr8:121437606:-	ONLY_REF_SPLICE	YES	2025	341	0.01	0.04	0.0931	0.0815	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	NCIH716_LARGE_INTESTINE	0.01	0.04	0.1746	TRUE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	TPH2--TRHDE	9	3	TPH2	20489	chr12:72469488:+	TRHDE	32262	chr12:72481141:+	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.1047	0.0349	NEIGHBORS_OVERLAP:+:+:[99352],TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	NCIH716_LARGE_INTESTINE	0.92	1	0.1396	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	8	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.93	0.88	0.0931	0.0698	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH716_LARGE_INTESTINE	0.88	0.93	0.1629	FALSE	515	4851	409	746	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	25	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	21	0	0.57	1	0.0349	0.2909	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH716_LARGE_INTESTINE	0.57	1	0.3258	FALSE	344	826	44	306	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	25	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	598	0	0.04	1	0.0349	0.2909	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH716_LARGE_INTESTINE	0.04	1	0.3258	FALSE	344	827	44	306	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND6--MT-TE	7	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0815	0.1047	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH716_LARGE_INTESTINE	0.94	1	0.1862	FALSE	499	1288	110	792	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	SAMD5--SASH1	9	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	16	3	0.38	0.77	0.1047	0.0116	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NCIH716_LARGE_INTESTINE	0.38	0.77	0.1163	TRUE	53	396	64	110	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	TPH2--TRHDE	6	13	TPH2	21594	chr12:72499532:+	TRHDE	37350	chr12:72680461:+	ONLY_REF_SPLICE	YES	3	2	0.86	0.9	0.0698	0.1513	NEIGHBORS_OVERLAP:+:+:[99352],TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	NCIH716_LARGE_INTESTINE	0.86	0.9	0.2211	FALSE	0	2	0	2	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-CO3--MT-ATP6	6	12	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	4	1	0.82	0.95	0.0698	0.1396	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH716_LARGE_INTESTINE	0.82	0.95	0.2094	FALSE	189	492	56	216	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	20	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	19	0	0.56	1	0.0465	0.2327	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH716_LARGE_INTESTINE	0.56	1	0.2792	FALSE	344	826	44	306	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	NPLOC4--PDE6G	9	0	NPLOC4	7044	chr17:79580344:-	PDE6G	38860	chr17:79618715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1047	0	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[1994],NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	NCIH716_LARGE_INTESTINE	1	1	0.1047	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-TA--MT-TC	6	11	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0698	0.128	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH716_LARGE_INTESTINE	1	1	0.1978	FALSE	462	80	0	856	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ATP6--MT-CO2	8	2	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	53	2	0.16	0.83	0.0931	0.0233	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH716_LARGE_INTESTINE	0.16	0.83	0.1164	FALSE	59	21	0	114	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	VGF--MT-ND4L	8	2	VGF	1176	chr7:100808699:-	MT-ND4L	7087	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2455	0	0	1	0.0931	0.0233	VGF->Oncogene{Bushman},VGF_nerve_growth_factor_inducible,chr7:100805790-100808874:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH716_LARGE_INTESTINE	0	1	0.1164	FALSE	0	0	0	4	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-CO3--MT-ATP6	8	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	4	1	0.69	0.9	0.0931	0.0116	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH716_LARGE_INTESTINE	0.69	0.9	0.1047	FALSE	189	492	56	216	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	16	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	20	0	0.5	1	0.0465	0.1862	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH716_LARGE_INTESTINE	0.5	1	0.2327	FALSE	344	826	44	306	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-RNR2	3	20	MT-ND4	2338	chrM:12097:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0349	0.2327	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH716_LARGE_INTESTINE	1	1	0.2676	FALSE	13	18	3	21	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	2	23	TATDN1	8556	chr8:125527987:-	DEPTOR	28867	chr8:121061815:+	ONLY_REF_SPLICE	YES	81	1679	0.24	0.01	0.0233	0.2677	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.01	0.24	0.291	TRUE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-RNR2	7	2	MT-ND4	1212	chrM:10971:+	MT-RNR2	5959	chrM:2251:+	INCL_NON_REF_SPLICE	YES	11639	8886	0	0	0.0815	0.0233	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH716_LARGE_INTESTINE	0	0	0.1048	FALSE	13	19	3	21	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	9	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	4	1	0.78	0.93	0.0582	0.1047	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH716_LARGE_INTESTINE	0.78	0.93	0.1629	FALSE	189	492	56	216	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	TPH2--TRHDE	3	17	TPH2	29171	chr12:72580403:+	TRHDE	37350	chr12:72680461:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.91	0.0349	0.1978	NEIGHBORS_OVERLAP:+:+:[99352],TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	NCIH716_LARGE_INTESTINE	0.91	1	0.2327	FALSE	0	0	0	2	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	C1orf194--UQCR10	7	0	C1orf194	3284	chr1:109650635:-	UQCR10	8361	chr22:30163372:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.41%,GTEx_FI:{Testis=[count:16=pct:15.2],Pituitary=[count:4=pct:7.7],Lung=[count:4=pct:2.4],Brain=[count:3=pct:0.5],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Fallopian_Tube=[count:1=pct:16.7],Thyroid=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=13;pct=0.15%;dist=Testis=12,Adipose_-_Subcutaneous=1},C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	NCIH716_LARGE_INTESTINE	1	1	0.0815	TRUE	26	6	0	14	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ATP6--MT-CO1	7	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH716_LARGE_INTESTINE	1	1	0.0815	FALSE	183	104	9	328	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ATP6--MT-CO1	6	4	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3002	16259	0	0	0.0698	0.0465	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH716_LARGE_INTESTINE	0	0	0.1163	FALSE	183	104	9	328	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ATP6--MT-CO2	7	0	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH716_LARGE_INTESTINE	1	1	0.0815	FALSE	59	21	0	114	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-RNR2	4	10	MT-ND4	1843	chrM:11602:+	MT-RNR2	5709	chrM:2001:+	INCL_NON_REF_SPLICE	NO	13510	10122	0	0	0.0465	0.1164	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH716_LARGE_INTESTINE	0	0	0.1629	FALSE	13	19	3	21	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND6--MT-TE	4	9	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.0465	0.1047	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH716_LARGE_INTESTINE	0.87	1	0.1512	FALSE	499	1288	110	792	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND6--MT-TE	4	9	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0465	0.1047	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH716_LARGE_INTESTINE	0.93	1	0.1512	FALSE	499	1288	110	792	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-TA--MT-TC	4	9	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0.1047	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH716_LARGE_INTESTINE	1	1	0.1512	FALSE	462	80	0	856	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	CASC9--RP11-300E4.2	6	0	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0698	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH716_LARGE_INTESTINE	1	1	0.0698	TRUE	0	23	0	19	23	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ATP6--MT-CO2	6	0	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0698	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH716_LARGE_INTESTINE	1	1	0.0698	FALSE	59	21	0	114	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ATP6--MT-CO2	5	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	54	2	0.14	0.82	0.0582	0.0465	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH716_LARGE_INTESTINE	0.14	0.82	0.1047	FALSE	59	21	0	114	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-CO3--MT-ATP6	6	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0698	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH716_LARGE_INTESTINE	1	1	0.0698	FALSE	189	492	56	216	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-RNR2	5	4	MT-ND4	1285	chrM:11044:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	13474	0	0	1	0.0582	0.0465	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH716_LARGE_INTESTINE	0	1	0.1047	FALSE	13	19	3	21	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-RNR2	5	3	MT-ND4	1209	chrM:10968:+	MT-RNR2	5933	chrM:2225:+	INCL_NON_REF_SPLICE	YES	11633	9664	0	0	0.0582	0.0349	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH716_LARGE_INTESTINE	0	0	0.0931	FALSE	13	19	3	21	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	2	14	FGFR2	20415	chr10:123274637:-	COL14A1	81068	chr8:121322248:+	ONLY_REF_SPLICE	YES	7847	7228	0	0	0.0233	0.1629	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0	0	0.1862	TRUE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	10	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	NO	3	1	0.81	0.93	0.0349	0.1164	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH716_LARGE_INTESTINE	0.81	0.93	0.1513	FALSE	189	492	56	216	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0582	0.0116	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH716_LARGE_INTESTINE	0.55	1	0.0698	FALSE	292	1546	117	613	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	RP11-141M1.3--STARD13	5	1	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	6	0.86	0.5	0.0582	0.0116	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NCIH716_LARGE_INTESTINE	0.5	0.86	0.0698	FALSE	49	120	16	70	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	TPH2--TRHDE	1	17	TPH2	27704	chr12:72561434:+	TRHDE	37350	chr12:72680461:+	ONLY_REF_SPLICE	YES	0	2	1	0.9	0.0116	0.1978	NEIGHBORS_OVERLAP:+:+:[99352],TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	NCIH716_LARGE_INTESTINE	0.9	1	0.2094	FALSE	0	1	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ATP6--MT-CO1	5	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH716_LARGE_INTESTINE	1	1	0.0582	FALSE	183	104	9	328	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH716_LARGE_INTESTINE	1	1	0.0582	FALSE	189	492	56	216	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	4	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	3	1	0.73	0.89	0.0465	0.0465	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH716_LARGE_INTESTINE	0.73	0.89	0.093	FALSE	189	492	56	216	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	RP11-141M1.3--STARD13	5	0	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0582	0	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NCIH716_LARGE_INTESTINE	1	1	0.0582	FALSE	141	264	50	91	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	2	12	TATDN1	2128	chr8:125550572:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	61	3	0.19	0.82	0.0233	0.1396	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0.19	0.82	0.1629	TRUE	0	0	0	2	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	PVT1--MTSS1	4	3	PVT1	1202	chr8:128806980:+	MTSS1	36534	chr8:125603476:-	ONLY_REF_SPLICE	YES	2024	2377	0	0	0.0465	0.0349	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	NCIH716_LARGE_INTESTINE	0	0	0.0814	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	RP11-120D5.1--MID1	4	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	13	0.58	0.35	0.0465	0.0349	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH716_LARGE_INTESTINE	0.35	0.58	0.0814	FALSE	16	356	14	466	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	1	14	FGFR2	20421	chr10:123274631:-	COL14A1	81068	chr8:121322248:+	ONLY_REF_SPLICE	YES	8415	7228	0	0	0.0116	0.1629	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0	0	0.1745	TRUE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	6	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	42	0	0.18	1	0.0349	0.0698	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH716_LARGE_INTESTINE	0.18	1	0.1047	FALSE	344	827	44	306	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	PVT1--MRPL13	1	14	PVT1	2520	chr8:128808317:+	MRPL13	31031	chr8:121444363:-	ONLY_REF_SPLICE	NO	863	323	0.02	0.04	0.0116	0.1629	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	NCIH716_LARGE_INTESTINE	0.02	0.04	0.1745	TRUE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	1	0.9	0.9	0.0349	0.0698	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH716_LARGE_INTESTINE	0.9	0.9	0.1047	FALSE	407	2205	196	549	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	TPH2--TRHDE	4	2	TPH2	20489	chr12:72469488:+	TRHDE	37350	chr12:72680461:+	ONLY_REF_SPLICE	YES	1	2	0.86	0.75	0.0465	0.0233	NEIGHBORS_OVERLAP:+:+:[99352],TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	NCIH716_LARGE_INTESTINE	0.75	0.86	0.0698	FALSE	0	4	0	3	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	2	9	FGFR2	9142	chr10:123310804:-	COL14A1	81068	chr8:121322248:+	ONLY_REF_SPLICE	YES	6335	7228	0	0	0.0233	0.1047	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0	0	0.128	TRUE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	2	9	FGFR2	9142	chr10:123310804:-	COL14A1	79981	chr8:121312971:+	ONLY_REF_SPLICE	YES	6335	6523	0	0	0.0233	0.1047	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0	0	0.128	TRUE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1182	chrM:8708:+	MT-CO1	5213	chrM:6435:+	INCL_NON_REF_SPLICE	YES	11388	14167	0	0	0.0465	0.0116	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH716_LARGE_INTESTINE	0	0	0.0581	FALSE	183	104	9	328	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	RP11-155G15.2--RP11-1E3.1	3	5	RP11-155G15.2	3309	chr5:96772337:+	RP11-1E3.1	9053	chr5:97004255:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0.0582	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH716_LARGE_INTESTINE	1	1	0.0931	FALSE	0	1	0	8	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	CENPK--CHMP1A	4	0	CENPK	14117	chr5:64817302:-	CHMP1A	23763	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0465	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Cells_-_Transformed_fibroblasts=1},{Klijn_CCL:Skin=1},CENPK->centromere_protein_K,chr5:64813593-64858998:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH716_LARGE_INTESTINE	1	1	0.0465	TRUE	1	1	0	3	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	EEF1A2--GAPDH	4	0	EEF1A2	3429	chr20:62127270:-	GAPDH	15269	chr12:6646296:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,EEF1A2->Oncogene{Bushman},chr20:62119366-62130505:-,eukaryotic_translation_elongation_factor_1_alpha_2,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	NCIH716_LARGE_INTESTINE	1	1	0.0465	TRUE	0	0	0	2	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	1	12	FGFR2	29001	chr10:123243212:-	COL14A1	86278	chr8:121353564:+	ONLY_REF_SPLICE	YES	217	9854	0.06	0	0.0116	0.1396	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0	0.06	0.1512	TRUE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	4	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	56	2	0.11	0.78	0.0349	0.0465	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH716_LARGE_INTESTINE	0.11	0.78	0.0814	FALSE	59	21	0	114	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH716_LARGE_INTESTINE	1	1	0.0465	FALSE	344	821	44	306	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH716_LARGE_INTESTINE	1	1	0.0465	FALSE	499	1288	110	792	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0.0465	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH716_LARGE_INTESTINE	1	1	0.0814	FALSE	462	80	0	856	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	10564	0	0	1	0.0349	0.0349	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH716_LARGE_INTESTINE	0	1	0.0698	FALSE	182	97	9	327	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	3	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	4	1	0.6	0.86	0.0349	0.0349	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH716_LARGE_INTESTINE	0.6	0.86	0.0698	FALSE	189	492	56	216	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	NDUFB9--PTMA	3	3	NDUFB9	5366	chr8:125562081:+	PTMA	13723	chr2:232573234:+	INCL_NON_REF_SPLICE	YES	2412	20	0	0.23	0.0349	0.0349	NDUFB9->NADH:ubiquinone_oxidoreductase_subunit_B9,chr8:125551344-125580751:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH716_LARGE_INTESTINE	0	0.23	0.0698	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	1	10	FGFR2	4111	chr10:123353223:-	COL14A1	41995	chr8:121160045:+	ONLY_REF_SPLICE	YES	7922	31	0	0.26	0.0116	0.1164	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0	0.26	0.128	TRUE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	1	10	FGFR2	20415	chr10:123274637:-	COL14A1	84683	chr8:121344380:+	ONLY_REF_SPLICE	YES	7847	8163	0	0	0.0116	0.1164	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0	0	0.128	TRUE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	1	10	FGFR2	20421	chr10:123274631:-	COL14A1	84683	chr8:121344380:+	ONLY_REF_SPLICE	NO	8415	8163	0	0	0.0116	0.1164	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0	0	0.128	TRUE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0.0233	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH716_LARGE_INTESTINE	1	1	0.0582	FALSE	344	821	44	306	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	PVT1--MRPL13	3	2	PVT1	1202	chr8:128806980:+	MRPL13	39248	chr8:121393413:-	ONLY_REF_SPLICE	YES	2025	2	0	0.71	0.0349	0.0233	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	NCIH716_LARGE_INTESTINE	0	0.71	0.0582	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	RP11-1E3.1--RP11-455B3.1	3	2	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0.0233	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	NCIH716_LARGE_INTESTINE	1	1	0.0582	TRUE	13	49	2	38	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.8	0.0233	0.0698	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH716_LARGE_INTESTINE	0.8	1	0.0931	FALSE	467	2173	244	435	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	1	9	FGFR2	16925	chr10:123279493:-	COL14A1	84683	chr8:121344380:+	ONLY_REF_SPLICE	YES	6928	8163	0	0	0.0116	0.1047	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0	0	0.1163	TRUE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	NRIP1--AF127936.7	3	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.13	1	0.0349	0.0116	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH716_LARGE_INTESTINE	0.13	1	0.0465	FALSE	125	705	46	456	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	NUCKS1--PM20D1	1	9	NUCKS1	2370	chr1:205698700:-	PM20D1	24456	chr1:205801894:-	ONLY_REF_SPLICE	YES	367	0	0.03	1	0.0116	0.1047	LOCAL_REARRANGEMENT:-:[77746],NUCKS1->chr1:205681947-205719404:-,nuclear_casein_kinase_and_cyclin-dependent_kinase_substrate_1,PM20D1->chr1:205797150-205819260:-,peptidase_M20_domain_containing_1	NCIH716_LARGE_INTESTINE	0.03	1	0.1163	TRUE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH716_LARGE_INTESTINE	1	1	0.0349	FALSE	183	104	9	328	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH716_LARGE_INTESTINE	1	1	0.0349	FALSE	183	104	9	328	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	0	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH716_LARGE_INTESTINE	1	1	0.0349	FALSE	59	21	0	114	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	PVT1--KIAA0196	3	0	PVT1	1202	chr8:128806980:+	KIAA0196	55356	chr8:126040949:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,KIAA0196->KIAA0196,chr8:126036502-126104082:-	NCIH716_LARGE_INTESTINE	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	LINC01014--KCNMB2	2	3	LINC01014	1175	chr3:178137163:+	KCNMB2	14218	chr3:178543376:+	ONLY_REF_SPLICE	YES	35	13	0.12	0.28	0.0233	0.0349	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH716_LARGE_INTESTINE	0.12	0.28	0.0582	FALSE	0	2	0	4	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	PVT1--MRPL13	2	3	PVT1	6936	chr8:128867565:+	MRPL13	39248	chr8:121393413:-	ONLY_REF_SPLICE	YES	27	2	0.16	0.71	0.0233	0.0349	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	NCIH716_LARGE_INTESTINE	0.16	0.71	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	2	3	TATDN1	1434	chr8:125551266:-	DEPTOR	25556	chr8:121015216:+	ONLY_REF_SPLICE	YES	7	1266	0.42	0	0.0233	0.0349	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0	0.42	0.0582	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	ZNF580--ZNF331	2	3	ZNF580	1697	chr19:56147078:+	ZNF331	21627	chr19:54079951:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0233	0.0349	HGNC_GENEFAM,PROTCLUST,ZNF580->chr19:56146382-56154835:+,zinc_finger_protein_580,ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331	NCIH716_LARGE_INTESTINE	0.83	1	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	TPH2--TRHDE	2	2	TPH2	18133	chr12:72441437:+	TRHDE	37350	chr12:72680461:+	ONLY_REF_SPLICE	YES	4	2	0.5	0.67	0.0233	0.0233	NEIGHBORS_OVERLAP:+:+:[99352],TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	NCIH716_LARGE_INTESTINE	0.5	0.67	0.0466	FALSE	0	1	0	4	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	CADM2--CHMP1A	2	1	CADM2	11527	chr3:86028433:+	CHMP1A	29130	chr16:89713739:-	ONLY_REF_SPLICE	YES	133	296	0.02	0.01	0.0233	0.0116	CADM2->cell_adhesion_molecule_2,chr3:85008132-86123579:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH716_LARGE_INTESTINE	0.01	0.02	0.0349	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	1	5	FGFR2	10266	chr10:123298106:-	COL14A1	89570	chr8:121379410:+	ONLY_REF_SPLICE	YES	7716	9283	0	0	0.0116	0.0582	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0	0	0.0698	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	1	5	FGFR2	7794	chr10:123324016:-	COL14A1	89570	chr8:121379410:+	ONLY_REF_SPLICE	YES	9126	9283	0	0	0.0116	0.0582	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0	0	0.0698	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	1	5	FGFR2	22695	chr10:123260340:-	COL14A1	89570	chr8:121379410:+	ONLY_REF_SPLICE	NO	6869	9283	0	0	0.0116	0.0582	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0	0	0.0698	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	NSMCE2--ATE1	2	1	NSMCE2	10764	chr8:126194498:+	ATE1	33738	chr10:123503373:-	ONLY_REF_SPLICE	YES	2594	43	0	0.07	0.0233	0.0116	NSMCE2->NSE2/MMS21_homolog,_SMC5-SMC6_complex_SUMO_ligase,chr8:126103921-126379362:+,ATE1->arginyltransferase_1,chr10:123499939-123688316:-	NCIH716_LARGE_INTESTINE	0	0.07	0.0349	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	PVT1--MTSS1	1	5	PVT1	6936	chr8:128867565:+	MTSS1	30381	chr8:125716432:-	ONLY_REF_SPLICE	YES	27	2811	0.18	0	0.0116	0.0582	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	NCIH716_LARGE_INTESTINE	0	0.18	0.0698	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	PVT1--MTSS1	2	1	PVT1	1202	chr8:128806980:+	MTSS1	41103	chr8:125580777:-	ONLY_REF_SPLICE	YES	2024	2134	0	0	0.0233	0.0116	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	NCIH716_LARGE_INTESTINE	0	0	0.0349	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	RP11-155G15.2--RP11-1E3.1	2	1	RP11-155G15.2	1071	chr5:96519373:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0.0116	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH716_LARGE_INTESTINE	1	1	0.0349	FALSE	1	1	0	4	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	2	1	TATDN1	1434	chr8:125551266:-	DEPTOR	28867	chr8:121061815:+	ONLY_REF_SPLICE	YES	7	1679	0.3	0	0.0233	0.0116	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0	0.3	0.0349	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	TPH2--TRHDE	2	1	TPH2	14921	chr12:72425171:+	TRHDE	33341	chr12:72499428:+	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0233	0.0116	NEIGHBORS_OVERLAP:+:+:[99352],TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	NCIH716_LARGE_INTESTINE	0.25	1	0.0349	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	AC123023.1--AC018359.1	2	0	AC123023.1	1065	chr3:34244800:+	AC018359.1	8782	chr3:34387714:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	NEIGHBORS_OVERLAP:+:+:[65567],AC123023.1->chr3:34244736-34310303:+,AC018359.1->chr3:34200826-34604369:+	NCIH716_LARGE_INTESTINE	1	1	0.0233	FALSE	0	1	0	3	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	AC123023.1--AC018359.1	2	0	AC123023.1	1065	chr3:34244800:+	AC018359.1	12826	chr3:34450753:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	NEIGHBORS_OVERLAP:+:+:[65567],AC123023.1->chr3:34244736-34310303:+,AC018359.1->chr3:34200826-34604369:+	NCIH716_LARGE_INTESTINE	1	1	0.0233	FALSE	1	4	3	3	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	AC123023.1--AC018359.1	2	0	AC123023.1	1065	chr3:34244800:+	AC018359.1	7715	chr3:34340345:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	NEIGHBORS_OVERLAP:+:+:[65567],AC123023.1->chr3:34244736-34310303:+,AC018359.1->chr3:34200826-34604369:+	NCIH716_LARGE_INTESTINE	1	1	0.0233	FALSE	0	2	0	3	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	ASPH--FAM160A2	2	0	ASPH	27900	chr8:62531537:-	FAM160A2	57218	chr11:6236141:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,FAM160A2->chr11:6232565-6255941:-,family_with_sequence_similarity_160_member_A2	NCIH716_LARGE_INTESTINE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	CDC42BPA--ARF1	2	0	CDC42BPA	2470	chr1:227504706:-	ARF1	59431	chr1:228284779:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CDC42BPA->CDC42_binding_protein_kinase_alpha,chr1:227177566-227506175:-,ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+	NCIH716_LARGE_INTESTINE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	1	4	FGFR2	4111	chr10:123353223:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	7922	321	0	0.02	0.0116	0.0465	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0	0.02	0.0581	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	NUCKS1--PM20D1	1	4	NUCKS1	2370	chr1:205698700:-	PM20D1	25625	chr1:205799507:-	ONLY_REF_SPLICE	YES	367	7	0.01	0.42	0.0116	0.0465	LOCAL_REARRANGEMENT:-:[77746],NUCKS1->chr1:205681947-205719404:-,nuclear_casein_kinase_and_cyclin-dependent_kinase_substrate_1,PM20D1->chr1:205797150-205819260:-,peptidase_M20_domain_containing_1	NCIH716_LARGE_INTESTINE	0.01	0.42	0.0581	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	PSPC1--MNAT1	2	0	PSPC1	7403	chr13:20304379:-	MNAT1	26418	chr14:61346432:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+	NCIH716_LARGE_INTESTINE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	PVT1--MTSS1	1	4	PVT1	1202	chr8:128806980:+	MTSS1	30381	chr8:125716432:-	ONLY_REF_SPLICE	YES	2024	2811	0	0	0.0116	0.0465	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	NCIH716_LARGE_INTESTINE	0	0	0.0581	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	R3HDM2--OS9	2	0	R3HDM2	2356	chr12:57789532:-	OS9	36037	chr12:58109543:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	NCIH716_LARGE_INTESTINE	1	1	0.0233	TRUE	0	0	0	3	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	RECK--CHMP1A	2	0	RECK	8005	chr9:36065621:+	CHMP1A	37619	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	RECK->chr9:36036430-36124448:+,reversion_inducing_cysteine_rich_protein_with_kazal_motifs,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH716_LARGE_INTESTINE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	RP11-138J23.1--MKLN1	2	0	RP11-138J23.1	4151	chr5:103439988:+	MKLN1	19348	chr7:131096065:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	RP11-138J23.1->chr5:103415612-103441104:+,MKLN1->chr7:130794855-131181395:+,muskelin_1	NCIH716_LARGE_INTESTINE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	SS18L1--DIDO1	2	0	SS18L1	1124	chr20:60718945:+	DIDO1	21284	chr20:61545758:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1	NCIH716_LARGE_INTESTINE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	PVT1--MRPL13	1	3	PVT1	2520	chr8:128808317:+	MRPL13	39248	chr8:121393413:-	ONLY_REF_SPLICE	NO	863	2	0	0.67	0.0116	0.0349	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	NCIH716_LARGE_INTESTINE	0	0.67	0.0465	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	RP11-120D5.1--MID1	1	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	13	0.44	0.24	0.0116	0.0349	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH716_LARGE_INTESTINE	0.24	0.44	0.0465	FALSE	0	48	1	163	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	1	2	FGFR2	4111	chr10:123353223:-	COL14A1	89570	chr8:121379410:+	ONLY_REF_SPLICE	YES	7922	9283	0	0	0.0116	0.0233	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0	0	0.0349	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	NO	94	126	0.02	0.02	0.0116	0.0116	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	NCIH716_LARGE_INTESTINE	0.02	0.02	0.0232	FALSE	118	557	29	88	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	FGFR2--COL14A1	1	1	FGFR2	1497	chr10:123357476:-	COL14A1	79981	chr8:121312971:+	ONLY_REF_SPLICE	NO	5755	6523	0	0	0.0116	0.0116	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NCIH716_LARGE_INTESTINE	0	0	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	MTHFD1--SYNE2	1	1	MTHFD1	17159	chr14:64898579:+	SYNE2	143222	chr14:64641662:+	ONLY_REF_SPLICE	YES	757	13	0	0.13	0.0116	0.0116	MTHFD1->chr14:64854749-64926722:+,methylenetetrahydrofolate_dehydrogenase,_cyclohydrolase_and_formyltetrahydrofolate_synthetase_1,SYNE2->Oncogene{Bushman},chr14:64319683-64693165:+,spectrin_repeat_containing_nuclear_envelope_protein_2	NCIH716_LARGE_INTESTINE	0	0.13	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	NETO2--PHKB	1	1	NETO2	1419	chr16:47177490:-	PHKB	27604	chr16:47581344:+	ONLY_REF_SPLICE	YES	114	153	0.02	0.01	0.0116	0.0116	NETO2->chr16:47111614-47177908:-,neuropilin_and_tolloid_like_2,PHKB->chr16:47495034-47735434:+,phosphorylase_kinase_beta_subunit	NCIH716_LARGE_INTESTINE	0.01	0.02	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	NSMCE2--ATE1	1	1	NSMCE2	3820	chr8:126114729:+	ATE1	33738	chr10:123503373:-	ONLY_REF_SPLICE	NO	3178	43	0	0.04	0.0116	0.0116	NSMCE2->NSE2/MMS21_homolog,_SMC5-SMC6_complex_SUMO_ligase,chr8:126103921-126379362:+,ATE1->arginyltransferase_1,chr10:123499939-123688316:-	NCIH716_LARGE_INTESTINE	0	0.04	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	NUCKS1--PM20D1	1	1	NUCKS1	1320	chr1:205719085:-	PM20D1	24456	chr1:205801894:-	ONLY_REF_SPLICE	YES	12	0	0.14	1	0.0116	0.0116	LOCAL_REARRANGEMENT:-:[77746],NUCKS1->chr1:205681947-205719404:-,nuclear_casein_kinase_and_cyclin-dependent_kinase_substrate_1,PM20D1->chr1:205797150-205819260:-,peptidase_M20_domain_containing_1	NCIH716_LARGE_INTESTINE	0.14	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000491
NCIH716_LARGE_INTESTINE	SCARB1--UBC	1	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	260	33	0.01	0.06	0.0116	0.0116	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH716_LARGE_INTESTINE	0.01	0.06	0.0232	FALSE	55	66	6	101	0	FALSE	ACH-000491
NCIH716_LARGE_INTESTINE	TATDN1--DEPTOR	1	1	TATDN1	1434	chr8:125551266:-	DEPTOR	27762	chr8:121021268:+	ONLY_REF_SPLICE	YES	7	1511	0.22	0	0.0116	0.0116	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NCIH716_LARGE_INTESTINE	0	0.22	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000491
NCIH2170_LUNG	RARA--TCAP	885	255	RARA	1095	chr17:38465538:+	TCAP	22188	chr17:37821969:+	ONLY_REF_SPLICE	YES	0	38	1	0.97	10.1703	2.9304	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,TCAP->chr17:37820440-37822808:+,titin-cap	NCIH2170_LUNG	0.97	1	13.1007	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	RARA--STARD3	474	79	RARA	1095	chr17:38465538:+	STARD3	30462	chr17:37818504:+	ONLY_REF_SPLICE	YES	0	78	1	0.88	5.4471	0.9079	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+	NCIH2170_LUNG	0.88	1	6.355	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	RNASE10--PTGR1	88	65	RNASE10	1483	chr14:20974178:+	PTGR1	16126	chr9:114337122:-	ONLY_REF_SPLICE	YES	0	16	1	0.91	1.0113	0.747	GTEx_FI:{Liver=[count:3=pct:2.5],Lung=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Small_Intestine=[count:1=pct:1.8],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Visceral_(Omentum)=2,Lung=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1},RNASE10->Oncogene{Bushman},chr14:20973696-20979328:+,ribonuclease_A_family_member_10_(inactive),PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	NCIH2170_LUNG	0.91	1	1.7583	TRUE	9	1	0	6	0	FALSE	ACH-000481
NCIH2170_LUNG	RARA--STARD3	89	46	RARA	1095	chr17:38465538:+	STARD3	31015	chr17:37819057:+	ONLY_REF_SPLICE	YES	0	218	1	0.38	1.0228	0.5286	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+	NCIH2170_LUNG	0.38	1	1.5514	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	TIMM23B--LINC00843	79	38	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.9079	0.4367	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2170_LUNG	0.98	1	1.3446	TRUE	508	994	45	981	0	FALSE	ACH-000481
NCIH2170_LUNG	RARA--TCAP	20	263	RARA	1095	chr17:38465538:+	TCAP	21845	chr17:37821626:+	INCL_NON_REF_SPLICE	YES	0	24	1	0.92	0.2298	3.0224	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,TCAP->chr17:37820440-37822808:+,titin-cap	NCIH2170_LUNG	0.92	1	3.2522	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	IKZF3--WIPF2	69	54	IKZF3	3225	chr17:37985640:-	WIPF2	17266	chr17:38416787:+	ONLY_REF_SPLICE	YES	0	82	1	0.6	0.7929	0.6206	IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-,WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+	NCIH2170_LUNG	0.6	1	1.4135	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	PVT1--PNMT	57	37	PVT1	1202	chr8:128806980:+	PNMT	30100	chr17:37825882:+	ONLY_REF_SPLICE	YES	4303	97	0.02	0.49	0.655	0.4252	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,PNMT->chr17:37824234-37826728:+,phenylethanolamine_N-methyltransferase	NCIH2170_LUNG	0.02	0.49	1.0802	TRUE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	TIMM23--RP11-464F9.1	53	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	210	3	0.21	0.95	0.6091	0.023	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2170_LUNG	0.21	0.95	0.6321	TRUE	519	3926	326	965	0	FALSE	ACH-000481
NCIH2170_LUNG	KANSL1--ARL17B	44	24	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	26	49	0.72	0.58	0.5056	0.2758	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH2170_LUNG	0.58	0.72	0.7814	TRUE	181	1564	124	196	0	FALSE	ACH-000481
NCIH2170_LUNG	CSDE1--SF3B3	32	46	CSDE1	13155	chr1:115276353:-	SF3B3	29918	chr16:70560490:+	ONLY_REF_SPLICE	YES	11117	62	0.01	0.56	0.3677	0.5286	CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1,SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3	NCIH2170_LUNG	0.01	0.56	0.8963	TRUE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ND4--MT-ND4L	21	69	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	8018	0	0.01	1	0.2413	0.7929	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2170_LUNG	0.01	1	1.0342	FALSE	344	827	44	306	0	FALSE	ACH-000481
NCIH2170_LUNG	OR51S1--TP53I11	34	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3907	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH2170_LUNG	1	1	0.3907	TRUE	402	216	10	229	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ND4--MT-ND4L	6	97	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	NO	37	1	0.74	0.99	0.069	1.1147	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2170_LUNG	0.74	0.99	1.1837	FALSE	344	826	44	306	0	FALSE	ACH-000481
NCIH2170_LUNG	ZNF654--HMGB2	30	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3448	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2170_LUNG	1	1	0.3448	TRUE	0	0	0	518	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-TA--MT-TC	28	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3218	0.069	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2170_LUNG	1	1	0.3908	FALSE	462	80	0	856	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ND4--MT-ND4L	4	96	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	23	1	0.81	0.99	0.046	1.1032	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2170_LUNG	0.81	0.99	1.1492	FALSE	344	826	44	306	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ND4--MT-ND4L	4	96	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	27	0	0.79	1	0.046	1.1032	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2170_LUNG	0.79	1	1.1492	FALSE	344	826	44	306	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ND4--MT-ND4L	3	94	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	14	1	0.87	0.99	0.0345	1.0802	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2170_LUNG	0.87	0.99	1.1147	FALSE	344	826	44	306	0	FALSE	ACH-000481
NCIH2170_LUNG	KIAA0391--ARHGAP5	22	15	KIAA0391	6550	chr14:35649983:+	ARHGAP5	29645	chr14:32586346:+	ONLY_REF_SPLICE	YES	350	91	0.1	0.29	0.2528	0.1724	{Klijn_CCL:Lung=1},KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+,ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+	NCIH2170_LUNG	0.1	0.29	0.4252	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	RBMS1--AC009299.2	17	16	RBMS1	8516	chr2:161223727:-	AC009299.2	33938	chr2:162105096:-	ONLY_REF_SPLICE	YES	81	0	0.29	1	0.1954	0.1839	RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-,AC009299.2->chr2:162079296-162111179:-	NCIH2170_LUNG	0.29	1	0.3793	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	WIPF2--PVT1	17	5	WIPF2	3370	chr17:38412774:+	PVT1	41410	chr8:129108764:+	ONLY_REF_SPLICE	YES	84	1934	0.21	0.01	0.1954	0.0575	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NCIH2170_LUNG	0.01	0.21	0.2529	TRUE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	PVT1--PNMT	7	43	PVT1	2520	chr8:128808317:+	PNMT	30100	chr17:37825882:+	ONLY_REF_SPLICE	YES	4593	97	0.01	0.34	0.0804	0.4941	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,PNMT->chr17:37824234-37826728:+,phenylethanolamine_N-methyltransferase	NCIH2170_LUNG	0.01	0.34	0.5745	TRUE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	PVT1--PNMT	7	41	PVT1	2457	chr8:128808254:+	PNMT	30100	chr17:37825882:+	ONLY_REF_SPLICE	YES	4505	97	0.01	0.33	0.0804	0.4712	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,PNMT->chr17:37824234-37826728:+,phenylethanolamine_N-methyltransferase	NCIH2170_LUNG	0.01	0.33	0.5516	TRUE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ND4--MT-ND4L	4	51	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	21	0	0.72	1	0.046	0.5861	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2170_LUNG	0.72	1	0.6321	FALSE	344	826	44	306	0	FALSE	ACH-000481
NCIH2170_LUNG	NIPA2--POLA1	16	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1839	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	NCIH2170_LUNG	1	1	0.1839	TRUE	46	1352	75	139	0	FALSE	ACH-000481
NCIH2170_LUNG	TRIM33--DENND2C	12	14	TRIM33	3895	chr1:115005726:-	DENND2C	32033	chr1:115197382:-	ONLY_REF_SPLICE	YES	346	1	0.07	0.96	0.1379	0.1609	LOCAL_REARRANGEMENT:-:[71688],TRIM33->Oncogene{Bushman},chr1:114935399-115053781:-,tripartite_motif_containing_33,DENND2C->DENN_domain_containing_2C,chr1:115125469-115213043:-	NCIH2170_LUNG	0.07	0.96	0.2988	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	RBMS1--AC009299.2	13	9	RBMS1	8516	chr2:161223727:-	AC009299.2	37752	chr2:162079994:-	ONLY_REF_SPLICE	YES	81	1	0.21	0.96	0.1494	0.1034	RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-,AC009299.2->chr2:162079296-162111179:-	NCIH2170_LUNG	0.21	0.96	0.2528	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	PVT1--PNMT	1	43	PVT1	8346	chr8:128903244:+	PNMT	30100	chr17:37825882:+	ONLY_REF_SPLICE	YES	3875	97	0.01	0.31	0.0115	0.4941	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,PNMT->chr17:37824234-37826728:+,phenylethanolamine_N-methyltransferase	NCIH2170_LUNG	0.01	0.31	0.5056	TRUE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	RP11-123O10.4--GRIP1	9	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1034	0.046	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2170_LUNG	1	1	0.1494	FALSE	416	2512	207	587	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ATP6--MT-CO1	9	3	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	10654	25521	0	0	0.1034	0.0345	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2170_LUNG	0	0	0.1379	FALSE	183	104	9	328	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ND4--MT-ND4L	6	13	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	48	0	0.28	1	0.069	0.1494	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2170_LUNG	0.28	1	0.2184	FALSE	344	826	44	306	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ND4--MT-ND4L	3	23	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	35	0	0.43	1	0.0345	0.2643	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2170_LUNG	0.43	1	0.2988	FALSE	344	826	44	306	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ND4--MT-ND4L	3	23	MT-ND4	1144	chrM:10903:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	23	0	0.53	1	0.0345	0.2643	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2170_LUNG	0.53	1	0.2988	FALSE	344	826	44	306	0	FALSE	ACH-000481
NCIH2170_LUNG	COG5--MIPOL1	7	6	COG5	7293	chr7:107167682:-	MIPOL1	69062	chr14:38016110:+	ONLY_REF_SPLICE	YES	85	55	0.13	0.19	0.0804	0.069	COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	NCIH2170_LUNG	0.13	0.19	0.1494	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	ERBB2--MT-ND4L	4	17	ERBB2	24987	chr17:37884137:+	MT-ND4L	30171	chrM:10471:+	INCL_NON_REF_SPLICE	YES	4800	0	0	1	0.046	0.1954	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2170_LUNG	0	1	0.2414	FALSE	0	1	0	4	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ATP6--MT-CO1	4	17	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3375	26708	0.01	0	0.046	0.1954	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2170_LUNG	0	0.01	0.2414	FALSE	183	104	9	328	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ND4--MT-ND4L	5	12	MT-ND4	1192	chrM:10951:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	37	0	0.31	1	0.0575	0.1379	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2170_LUNG	0.31	1	0.1954	FALSE	344	826	44	306	0	FALSE	ACH-000481
NCIH2170_LUNG	G6PD--MT-CO1	7	3	G6PD	7723	chrX:153760208:-	MT-CO1	12353	chrM:6931:+	INCL_NON_REF_SPLICE	YES	2565	24126	0	0	0.0804	0.0345	G6PD->chrX:153759606-153775787:-,glucose-6-phosphate_dehydrogenase,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2170_LUNG	0	0	0.1149	FALSE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	KIAA0391--ARHGAP5	4	15	KIAA0391	6550	chr14:35649983:+	ARHGAP5	29648	chr14:32586349:+	ONLY_REF_SPLICE	YES	350	82	0.05	0.19	0.046	0.1724	{Klijn_CCL:Lung=1},KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+,ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+	NCIH2170_LUNG	0.05	0.19	0.2184	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	TRIM33--DENND2C	5	11	TRIM33	3895	chr1:115005726:-	DENND2C	33290	chr1:115188180:-	ONLY_REF_SPLICE	YES	346	7	0.04	0.7	0.0575	0.1264	LOCAL_REARRANGEMENT:-:[71688],TRIM33->Oncogene{Bushman},chr1:114935399-115053781:-,tripartite_motif_containing_33,DENND2C->DENN_domain_containing_2C,chr1:115125469-115213043:-	NCIH2170_LUNG	0.04	0.7	0.1839	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	MT-ATP6--MT-CO1	6	6	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13177	26046	0	0	0.069	0.069	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2170_LUNG	0	0	0.138	FALSE	183	104	9	328	0	FALSE	ACH-000481
NCIH2170_LUNG	C15orf57--CBX3	6	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	36	33	0.22	0.23	0.069	0.046	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2170_LUNG	0.22	0.23	0.115	TRUE	267	562	48	632	0	FALSE	ACH-000481
NCIH2170_LUNG	TRIM33--DENND2C	5	7	TRIM33	3895	chr1:115005726:-	DENND2C	34402	chr1:115168809:-	ONLY_REF_SPLICE	YES	346	11	0.03	0.52	0.0575	0.0804	LOCAL_REARRANGEMENT:-:[71688],TRIM33->Oncogene{Bushman},chr1:114935399-115053781:-,tripartite_motif_containing_33,DENND2C->DENN_domain_containing_2C,chr1:115125469-115213043:-	NCIH2170_LUNG	0.03	0.52	0.1379	TRUE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ND4--MT-ND4L	5	6	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	37	0	0.23	1	0.0575	0.069	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2170_LUNG	0.23	1	0.1265	FALSE	344	826	44	306	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ND4--MT-ND4L	3	14	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	725	0	0.02	1	0.0345	0.1609	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2170_LUNG	0.02	1	0.1954	FALSE	344	827	44	306	0	FALSE	ACH-000481
NCIH2170_LUNG	IKZF3--WIPF2	3	13	IKZF3	3225	chr17:37985640:-	WIPF2	18570	chr17:38418777:+	ONLY_REF_SPLICE	YES	0	65	1	0.2	0.0345	0.1494	IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-,WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+	NCIH2170_LUNG	0.2	1	0.1839	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	MT-ATP6--MT-CO1	4	9	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	11558	0	0	1	0.046	0.1034	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2170_LUNG	0	1	0.1494	FALSE	182	97	9	327	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ND4--MT-ND4L	3	13	MT-ND4	1278	chrM:11037:+	MT-ND4L	5663	chrM:10754:+	INCL_NON_REF_SPLICE	NO	90	0	0.15	1	0.0345	0.1494	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2170_LUNG	0.15	1	0.1839	FALSE	344	827	44	306	0	FALSE	ACH-000481
NCIH2170_LUNG	CRIP2--SERINC2	6	0	CRIP2	2944	chr14:105941242:+	SERINC2	22462	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.069	0	CRIP2->Oncogene{Bushman},chr14:105939299-105946499:+,cysteine_rich_protein_2,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	NCIH2170_LUNG	1	1	0.069	TRUE	0	1	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	RNASE10--PTGR1	1	20	RNASE10	1483	chr14:20974178:+	PTGR1	17235	chr9:114332489:-	ONLY_REF_SPLICE	NO	0	31	1	0.4	0.0115	0.2298	GTEx_FI:{Liver=[count:3=pct:2.5],Lung=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Small_Intestine=[count:1=pct:1.8],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Visceral_(Omentum)=2,Lung=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1},RNASE10->Oncogene{Bushman},chr14:20973696-20979328:+,ribonuclease_A_family_member_10_(inactive),PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	NCIH2170_LUNG	0.4	1	0.2413	TRUE	2	0	0	3	0	FALSE	ACH-000481
NCIH2170_LUNG	SLC7A5--MT-ND1	6	0	SLC7A5	13719	chr16:87864490:-	MT-ND1	17596	chrM:3322:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH2170_LUNG	1	1	0.069	FALSE	0	0	0	11	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ND4--MT-ND4L	4	6	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	108	0	0.08	1	0.046	0.069	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2170_LUNG	0.08	1	0.115	FALSE	344	827	44	306	0	FALSE	ACH-000481
NCIH2170_LUNG	NRIP1--AF127936.7	5	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0575	0.023	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2170_LUNG	0.64	1	0.0805	FALSE	292	1546	117	613	0	FALSE	ACH-000481
NCIH2170_LUNG	WIPF2--PVT1	3	10	WIPF2	3370	chr17:38412774:+	PVT1	29467	chr8:128951754:+	ONLY_REF_SPLICE	YES	84	2811	0.13	0	0.0345	0.1149	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NCIH2170_LUNG	0	0.13	0.1494	TRUE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ATP6--MT-CO1	4	4	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	10833	23471	0	0	0.046	0.046	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2170_LUNG	0	0	0.092	FALSE	183	104	9	328	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ND4--MT-ND4L	3	8	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	0	0.79	1	0.0345	0.0919	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2170_LUNG	0.79	1	0.1264	FALSE	344	821	44	306	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-TA--MT-TC	3	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0.069	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2170_LUNG	1	1	0.1035	FALSE	462	80	0	856	0	FALSE	ACH-000481
NCIH2170_LUNG	WIPF2--PVT1	2	10	WIPF2	3370	chr17:38412774:+	PVT1	32715	chr8:129001408:+	ONLY_REF_SPLICE	YES	84	2258	0.12	0.01	0.023	0.1149	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NCIH2170_LUNG	0.01	0.12	0.1379	TRUE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	WIPF2--PVT1	1	13	WIPF2	3370	chr17:38412774:+	PVT1	26826	chr8:128902835:+	ONLY_REF_SPLICE	YES	84	4171	0.14	0	0.0115	0.1494	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NCIH2170_LUNG	0	0.14	0.1609	TRUE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	WIPF2--PVT1	2	9	WIPF2	3370	chr17:38412774:+	PVT1	39112	chr8:129082406:+	ONLY_REF_SPLICE	YES	84	1983	0.12	0.01	0.023	0.1034	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NCIH2170_LUNG	0.01	0.12	0.1264	TRUE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH2170_LUNG	1	1	0.046	TRUE	22	156	2	142	0	FALSE	ACH-000481
NCIH2170_LUNG	MT-ATP6--MT-CO1	3	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10858	26358	0	0	0.0345	0.0345	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2170_LUNG	0	0	0.069	FALSE	183	104	9	328	0	FALSE	ACH-000481
NCIH2170_LUNG	ERBB2--CDC6	3	2	ERBB2	13666	chr17:37868650:+	CDC6	30453	chr17:38444168:+	INCL_NON_REF_SPLICE	YES	4561	28	0	0.15	0.0345	0.023	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,CDC6->Oncogene{Bushman},cell_division_cycle_6,chr17:38443885-38459171:+	NCIH2170_LUNG	0	0.15	0.0575	FALSE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	FTL--MT-CO1	3	2	FTL	1134	chr19:49468691:+	MT-CO1	6232	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4422	26709	0	0	0.0345	0.023	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2170_LUNG	0	0	0.0575	FALSE	0	7	0	14	0	FALSE	ACH-000481
NCIH2170_LUNG	HSP90AB1--MT-RNR2	3	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2638	0	0	1	0.0345	0.023	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2170_LUNG	0	1	0.0575	FALSE	13	9	0	364	0	FALSE	ACH-000481
NCIH2170_LUNG	HSP90AB1--MT-RNR2	3	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2639	0	0	1	0.0345	0.023	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2170_LUNG	0	1	0.0575	FALSE	13	9	0	364	0	FALSE	ACH-000481
NCIH2170_LUNG	WIPF2--PVT1	1	10	WIPF2	3370	chr17:38412774:+	PVT1	36095	chr8:129021836:+	ONLY_REF_SPLICE	NO	84	2000	0.12	0.01	0.0115	0.1149	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NCIH2170_LUNG	0.01	0.12	0.1264	TRUE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	FTL--MT-CO1	3	1	FTL	1129	chr19:49468686:+	MT-CO1	6014	chrM:6339:+	INCL_NON_REF_SPLICE	YES	3415	23972	0	0	0.0345	0.0115	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2170_LUNG	0	0	0.046	FALSE	0	7	0	14	0	FALSE	ACH-000481
NCIH2170_LUNG	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0.046	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2170_LUNG	1	1	0.069	FALSE	467	2173	244	435	0	FALSE	ACH-000481
NCIH2170_LUNG	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.023	0.046	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2170_LUNG	0.86	1	0.069	FALSE	515	4851	409	746	0	FALSE	ACH-000481
NCIH2170_LUNG	IKZF3--WIPF2	1	7	IKZF3	3225	chr17:37985640:-	WIPF2	19687	chr17:38420742:+	ONLY_REF_SPLICE	YES	0	110	1	0.07	0.0115	0.0804	IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-,WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+	NCIH2170_LUNG	0.07	1	0.0919	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	NDUFA4--PHF14	2	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	867	74	0	0.04	0.023	0.0115	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH2170_LUNG	0	0.04	0.0345	FALSE	19	32	3	60	0	FALSE	ACH-000481
NCIH2170_LUNG	WIPF2--PVT1	1	5	WIPF2	3370	chr17:38412774:+	PVT1	41413	chr8:129108767:+	ONLY_REF_SPLICE	YES	84	1879	0.07	0	0.0115	0.0575	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NCIH2170_LUNG	0	0.07	0.069	FALSE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH2170_LUNG	1	1	0.023	TRUE	0	9	0	44	1	FALSE	ACH-000481
NCIH2170_LUNG	IKZF3--WIPF2	2	0	IKZF3	3225	chr17:37985640:-	WIPF2	21521	chr17:38430042:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-,WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+	NCIH2170_LUNG	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	OLA1--SP3	2	0	OLA1	2984	chr2:175111443:-	SP3	23997	chr2:174820960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-,SP3->Sp3_transcription_factor,chr2:174771187-174830430:-	NCIH2170_LUNG	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	PROSC--GNAS	2	0	PROSC	2996	chr8:37623873:+	GNAS	28232	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH2170_LUNG	1	1	0.023	TRUE	0	3	1	3	0	TRUE	ACH-000481
NCIH2170_LUNG	RAB27B--TXNL1	2	0	RAB27B	2784	chr18:52495931:+	TXNL1	22318	chr18:54293688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	RAB27B->RAB27B,_member_RAS_oncogene_family,chr18:52385091-52562747:+,TXNL1->chr18:54264439-54318831:-,thioredoxin_like_1	NCIH2170_LUNG	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2170_LUNG	1	1	0.023	FALSE	16	356	14	466	0	FALSE	ACH-000481
NCIH2170_LUNG	RP11-120D5.1--MID1	2	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2170_LUNG	1	1	0.023	FALSE	0	48	1	163	0	FALSE	ACH-000481
NCIH2170_LUNG	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0115	0.046	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2170_LUNG	1	1	0.0575	FALSE	192	492	57	212	0	FALSE	ACH-000481
NCIH2170_LUNG	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.83	1	0.0115	0.046	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2170_LUNG	0.83	1	0.0575	FALSE	407	2205	196	549	0	FALSE	ACH-000481
NCIH2170_LUNG	ZDHHC20--ELF1	2	0	ZDHHC20	1317	chr13:22033193:-	ELF1	31459	chr13:41508164:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	ZDHHC20->chr13:21950263-22033509:-,zinc_finger_DHHC-type_containing_20,ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-	NCIH2170_LUNG	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000481
NCIH2170_LUNG	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0115	0.0345	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH2170_LUNG	0.8	1	0.046	TRUE	160	277	29	98	0	FALSE	ACH-000481
NCIH2170_LUNG	EPS8L1--CRIP2	1	2	EPS8L1	3891	chr19:55589496:+	CRIP2	21939	chr14:105944603:+	ONLY_REF_SPLICE	YES	56	36	0.05	0.08	0.0115	0.023	EPS8L1->EPS8_like_1,chr19:55583388-55599291:+,CRIP2->Oncogene{Bushman},chr14:105939299-105946499:+,cysteine_rich_protein_2	NCIH2170_LUNG	0.05	0.08	0.0345	TRUE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	3	0	0.5	1	0.0115	0.023	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2170_LUNG	0.5	1	0.0345	FALSE	164	806	69	479	0	FALSE	ACH-000481
NCIH2170_LUNG	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0115	0.023	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH2170_LUNG	0.75	1	0.0345	TRUE	477	1352	189	275	0	FALSE	ACH-000481
NCIH2170_LUNG	C7orf50--MAD1L1	1	1	C7orf50	12142	chr7:1040106:-	MAD1L1	55558	chr7:1855864:-	ONLY_REF_SPLICE	YES	439	63	0	0.03	0.0115	0.0115	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	NCIH2170_LUNG	0	0.03	0.023	FALSE	0	2	0	4	0	FALSE	ACH-000481
NCIH2170_LUNG	ERBB2--CDC6	1	1	ERBB2	13717	chr17:37868701:+	CDC6	36588	chr17:38451608:+	ONLY_REF_SPLICE	YES	5575	8154	0	0	0.0115	0.0115	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,CDC6->Oncogene{Bushman},cell_division_cycle_6,chr17:38443885-38459171:+	NCIH2170_LUNG	0	0	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	SF1--GNAS	1	1	SF1	3289	chr11:64543970:-	GNAS	32063	chr20:57470667:+	ONLY_REF_SPLICE	YES	260	986	0.01	0	0.0115	0.0115	GTEx_FI:{Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=3,Pituitary=3,Minor_Salivary_Gland=1,Brain_-_Hypothalamus=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH2170_LUNG	0	0.01	0.023	FALSE	4	13	1	15	0	FALSE	ACH-000481
NCIH2170_LUNG	SLC25A21--TRAPPC6B	1	1	SLC25A21	1586	chr14:37641486:-	TRAPPC6B	23256	chr14:39623498:-	ONLY_REF_SPLICE	NO	25	183	0.07	0.01	0.0115	0.0115	SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21,TRAPPC6B->chr14:39617015-39639736:-,trafficking_protein_particle_complex_6B	NCIH2170_LUNG	0.01	0.07	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000481
NCIH2170_LUNG	TRIT1--PPIE	1	1	TRIT1	1194	chr1:40348990:-	PPIE	32921	chr1:40228189:+	ONLY_REF_SPLICE	YES	57	9	0.03	0.18	0.0115	0.0115	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH2170_LUNG	0.03	0.18	0.023	TRUE	0	0	0	3	0	FALSE	ACH-000481
CORL23_LUNG	EFCAB4B--C12orf5	976	899	EFCAB4B	2441	chr12:3862181:-	C12orf5	39713	chr12:4440446:+	ONLY_REF_SPLICE	YES	50	63	0.97	0.97	10.8883	10.0293	EFCAB4B->chr12:3715799-3873985:-,C12orf5->chr12:4430371-4462338:+	CORL23_LUNG	0.97	0.97	20.9176	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	AC104389.28--HBE1	575	692	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	1836	8	0.41	0.99	6.4147	7.72	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CORL23_LUNG	0.41	0.99	14.1347	TRUE	0	48	0	65	48	FALSE	ACH-000662
CORL23_LUNG	PVT1--CASC11	234	258	PVT1	18060	chr8:129022690:+	CASC11	28460	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	37	0	0.93	1	2.6105	2.8783	LOCAL_INVERSION:+:-:[60566],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CORL23_LUNG	0.93	1	5.4888	TRUE	0	1	0	2	1	TRUE	ACH-000662
CORL23_LUNG	EFCAB4B--C12orf5	36	821	EFCAB4B	2441	chr12:3862181:-	C12orf5	41871	chr12:4446205:+	ONLY_REF_SPLICE	YES	50	569	0.94	0.6	0.4016	9.1591	EFCAB4B->chr12:3715799-3873985:-,C12orf5->chr12:4430371-4462338:+	CORL23_LUNG	0.6	0.94	9.5607	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	AC104389.28--HBE1	51	710	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	1836	1	0.29	1	0.569	7.9208	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CORL23_LUNG	0.29	1	8.4898	TRUE	0	35	0	55	35	FALSE	ACH-000662
CORL23_LUNG	PVT1--CASC11	149	113	PVT1	13955	chr8:129001537:+	CASC11	28460	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	162	0	0.62	1	1.6622	1.2606	LOCAL_INVERSION:+:-:[60566],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CORL23_LUNG	0.62	1	2.9228	TRUE	0	1	0	1	1	TRUE	ACH-000662
CORL23_LUNG	AC104389.28--HBE1	7	661	AC104389.28	3440	chr11:5367003:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	1836	7	0.27	0.99	0.0781	7.3741	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CORL23_LUNG	0.27	0.99	7.4522	TRUE	0	48	0	65	48	FALSE	ACH-000662
CORL23_LUNG	MT-TA--MT-TN	112	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2495	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL23_LUNG	1	1	1.2495	FALSE	369	2501	205	193	0	FALSE	ACH-000662
CORL23_LUNG	EFCAB4B--C12orf5	2	370	EFCAB4B	2441	chr12:3862181:-	C12orf5	42993	chr12:4458985:+	ONLY_REF_SPLICE	YES	50	1303	0.88	0.22	0.0223	4.1277	EFCAB4B->chr12:3715799-3873985:-,C12orf5->chr12:4430371-4462338:+	CORL23_LUNG	0.22	0.88	4.15	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	RP11-344E13.3--UBBP4	34	231	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	406	1	0.39	1	0.3793	2.577	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	CORL23_LUNG	0.39	1	2.9563	TRUE	23	13	0	54	0	FALSE	ACH-000662
CORL23_LUNG	PVT1--CASC11	4	260	PVT1	19222	chr8:129060855:+	CASC11	28460	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	38	0	0.87	1	0.0446	2.9006	LOCAL_INVERSION:+:-:[60566],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CORL23_LUNG	0.87	1	2.9452	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	EFCAB4B--C12orf5	1	220	EFCAB4B	2441	chr12:3862181:-	C12orf5	44071	chr12:4460433:+	ONLY_REF_SPLICE	YES	50	1173	0.82	0.16	0.0112	2.4543	EFCAB4B->chr12:3715799-3873985:-,C12orf5->chr12:4430371-4462338:+	CORL23_LUNG	0.16	0.82	2.4655	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	MT-TA--MT-TC	54	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6024	0.0558	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL23_LUNG	1	1	0.6582	FALSE	462	80	0	856	0	FALSE	ACH-000662
CORL23_LUNG	TIMM23B--LINC00843	43	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.4797	0.2901	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CORL23_LUNG	0.99	1	0.7698	TRUE	508	994	45	981	0	FALSE	ACH-000662
CORL23_LUNG	CDKN2A--PTPRD	35	43	CDKN2A	2163	chr9:21994138:-	PTPRD	14707	chr9:10341017:-	ONLY_REF_SPLICE	YES	1362	0	0.05	1	0.3905	0.4797	CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A,PTPRD->Oncogene{Bushman},chr9:8314246-10612723:-,protein_tyrosine_phosphatase,_receptor_type_D	CORL23_LUNG	0.05	1	0.8702	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	TIMM23--RP11-464F9.1	29	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	430	5	0.07	0.86	0.3235	0.0335	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CORL23_LUNG	0.07	0.86	0.357	TRUE	519	3926	326	965	0	FALSE	ACH-000662
CORL23_LUNG	RP11-680G10.1--GSE1	25	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	64	1	0.34	0.2789	0.0892	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CORL23_LUNG	0.34	1	0.3681	TRUE	465	1949	224	605	0	FALSE	ACH-000662
CORL23_LUNG	RP11-114H23.1--RP11-114H23.2	21	23	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	5	0	0.9	1	0.2343	0.2566	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CORL23_LUNG	0.9	1	0.4909	FALSE	81	155	12	160	0	FALSE	ACH-000662
CORL23_LUNG	MT-TA--MT-TN	13	50	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.145	0.5578	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL23_LUNG	1	1	0.7028	FALSE	369	2501	205	193	0	FALSE	ACH-000662
CORL23_LUNG	CTC-338M12.9--KMT2C	17	32	CTC-338M12.9	2428	chr5:180710532:+	KMT2C	13003	chr7:151970952:-	INCL_NON_REF_SPLICE	YES	1	7	0.98	0.88	0.1897	0.357	CTC-338M12.9->chr5:180708376-180710653:+,KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C	CORL23_LUNG	0.88	0.98	0.5467	TRUE	0	0	0	3	0	TRUE	ACH-000662
CORL23_LUNG	AC104389.28--HBE1	24	3	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	120	8	0.18	0.77	0.2677	0.0335	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CORL23_LUNG	0.18	0.77	0.3012	TRUE	0	16	0	53	13	FALSE	ACH-000662
CORL23_LUNG	RP11-344E13.3--UBBP4	4	77	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34816	chr17:21730838:+	INCL_NON_REF_SPLICE	YES	406	91	0.17	0.47	0.0446	0.859	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	CORL23_LUNG	0.17	0.47	0.9036	TRUE	23	13	0	54	0	FALSE	ACH-000662
CORL23_LUNG	PPARD--SCUBE3	15	24	PPARD	2208	chr6:35314927:+	SCUBE3	16167	chr6:35195357:+	ONLY_REF_SPLICE	YES	173	0	0.18	1	0.1673	0.2677	LOCAL_REARRANGEMENT:+:[89479],PPARD->Oncogene{Bushman},chr6:35310335-35395968:+,peroxisome_proliferator_activated_receptor_delta,SCUBE3->chr6:35182190-35220856:+,signal_peptide,_CUB_domain_and_EGF_like_domain_containing_3	CORL23_LUNG	0.18	1	0.435	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	CCDC88A--CLHC1	14	20	CCDC88A	8066	chr2:55615914:-	CLHC1	60604	chr2:55432864:-	ONLY_REF_SPLICE	YES	17	11	0.67	0.76	0.1562	0.2231	NEIGHBORS[55279],CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,CLHC1->chr2:55401927-55459699:-,clathrin_heavy_chain_linker_domain_containing_1	CORL23_LUNG	0.67	0.76	0.3793	FALSE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	14	8	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	29742	0	0	1	0.1562	0.0892	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	1	0.2454	FALSE	231	217	16	283	0	FALSE	ACH-000662
CORL23_LUNG	MT-TA--MT-TN	6	38	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0669	0.4239	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL23_LUNG	1	1	0.4908	FALSE	369	2501	205	193	0	FALSE	ACH-000662
CORL23_LUNG	ZNF654--HMGB2	15	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1673	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CORL23_LUNG	1	1	0.1673	TRUE	0	0	0	518	0	FALSE	ACH-000662
CORL23_LUNG	AC104389.28--HBE1	14	0	AC104389.28	1093	chr11:5526790:-	HBE1	13750	chr11:5291386:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1562	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CORL23_LUNG	1	1	0.1562	TRUE	0	16	0	53	13	FALSE	ACH-000662
CORL23_LUNG	MT-TA--MT-TN	6	32	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0669	0.357	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL23_LUNG	1	1	0.4239	FALSE	369	2501	205	193	0	FALSE	ACH-000662
CORL23_LUNG	MT-TA--MT-TN	10	15	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1116	0.1673	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL23_LUNG	1	1	0.2789	FALSE	369	2501	205	193	0	FALSE	ACH-000662
CORL23_LUNG	MT-TA--MT-TN	13	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.145	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL23_LUNG	1	1	0.145	FALSE	369	2501	205	193	0	FALSE	ACH-000662
CORL23_LUNG	MT-TA--MT-TN	6	27	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0669	0.3012	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL23_LUNG	1	1	0.3681	FALSE	369	2501	205	193	0	FALSE	ACH-000662
CORL23_LUNG	CDKN2A--PTPRD	4	33	CDKN2A	2163	chr9:21994138:-	PTPRD	15762	chr9:10033790:-	ONLY_REF_SPLICE	YES	1362	1	0.03	0.97	0.0446	0.3681	CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A,PTPRD->Oncogene{Bushman},chr9:8314246-10612723:-,protein_tyrosine_phosphatase,_receptor_type_D	CORL23_LUNG	0.03	0.97	0.4127	TRUE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	12	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19532	8	0	0.62	0.1339	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	0.62	0.1451	FALSE	230	198	14	283	0	FALSE	ACH-000662
CORL23_LUNG	RPSAP52--HMGA2	10	7	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	20	1289	0.46	0.01	0.1116	0.0781	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	CORL23_LUNG	0.01	0.46	0.1897	FALSE	0	59	0	125	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND6--MT-TE	11	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1227	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL23_LUNG	1	1	0.1227	FALSE	499	1288	110	792	0	FALSE	ACH-000662
CORL23_LUNG	RP11-307P5.1--SASH1	8	10	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	17	1	0.51	0.0892	0.1116	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	CORL23_LUNG	0.51	1	0.2008	TRUE	0	2	0	37	2	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	6	16	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	23287	237	0	0.08	0.0669	0.1785	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	0.08	0.2454	FALSE	231	217	16	283	0	FALSE	ACH-000662
CORL23_LUNG	MT-TA--MT-TN	10	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1116	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL23_LUNG	1	1	0.1116	FALSE	369	2501	205	193	0	FALSE	ACH-000662
CORL23_LUNG	AC104389.28--HBE1	9	0	AC104389.28	1084	chr11:5526799:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1004	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CORL23_LUNG	1	1	0.1004	TRUE	0	16	0	53	13	FALSE	ACH-000662
CORL23_LUNG	C15orf57--CBX3	7	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	149	68	0.09	0.18	0.0781	0.0892	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CORL23_LUNG	0.09	0.18	0.1673	TRUE	267	562	48	632	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND6--MT-TE	9	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1004	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL23_LUNG	1	1	0.1004	FALSE	499	1288	110	792	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	3	23	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1759	0	0.01	1	0.0335	0.2566	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0.01	1	0.2901	FALSE	216	209	16	281	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	4	19	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	24513	0	0	1	0.0446	0.212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	1	0.2566	FALSE	231	217	16	283	0	FALSE	ACH-000662
CORL23_LUNG	SERF2--CTC-575D19.1	8	3	SERF2	6109	chr15:44085993:+	CTC-575D19.1	16124	chr5:168043316:+	INCL_NON_REF_SPLICE	YES	1980	0	0.01	1	0.0892	0.0335	SERF2->chr15:44069285-44094787:+,small_EDRK-rich_factor_2,CTC-575D19.1->chr5:168043317-168044059:+	CORL23_LUNG	0.01	1	0.1227	TRUE	0	0	0	3	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	4	18	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	25739	0	0	1	0.0446	0.2008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	1	0.2454	FALSE	231	217	16	283	0	FALSE	ACH-000662
CORL23_LUNG	PVT1--CASC11	6	10	PVT1	6936	chr8:128867565:+	CASC11	32546	chr8:128715488:-	ONLY_REF_SPLICE	YES	1155	4	0.01	0.8	0.0669	0.1116	LOCAL_INVERSION:+:-:[60566],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CORL23_LUNG	0.01	0.8	0.1785	TRUE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	3	21	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	22299	0	0	1	0.0335	0.2343	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	1	0.2678	FALSE	231	215	16	283	0	FALSE	ACH-000662
CORL23_LUNG	MT-TA--MT-TC	7	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0781	0.0558	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL23_LUNG	1	1	0.1339	FALSE	462	80	0	856	0	FALSE	ACH-000662
CORL23_LUNG	WTAPP1--RUVBL1	8	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0892	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	CORL23_LUNG	1	1	0.0892	TRUE	9	252	6	66	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	3	18	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	24684	0	0	1	0.0335	0.2008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	1	0.2343	FALSE	231	217	16	283	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	3	18	MT-ND4	1989	chrM:11748:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	24389	0	0	1	0.0335	0.2008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	1	0.2343	FALSE	231	217	16	283	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	3	17	MT-ND4	2326	chrM:12085:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	1	144	0.95	0.12	0.0335	0.1897	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0.12	0.95	0.2232	FALSE	209	205	15	279	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	3	17	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3536	84	0.01	0.19	0.0335	0.1897	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0.01	0.19	0.2232	FALSE	216	209	16	281	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	3	17	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	27543	0	0	1	0.0335	0.1897	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	1	0.2232	FALSE	231	217	16	283	0	FALSE	ACH-000662
CORL23_LUNG	MT-TA--MT-TC	7	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0781	0.0112	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL23_LUNG	1	1	0.0893	FALSE	462	80	0	856	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	5	8	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	29042	0	0	1	0.0558	0.0892	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	1	0.145	FALSE	231	217	16	283	0	FALSE	ACH-000662
CORL23_LUNG	RCC1--SNX5	7	0	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0781	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	CORL23_LUNG	1	1	0.0781	TRUE	0	5	0	11	0	TRUE	ACH-000662
CORL23_LUNG	RP11-123O10.4--GRIP1	7	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0781	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CORL23_LUNG	1	1	0.0781	FALSE	416	2512	207	587	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	3	15	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	28008	0	0	1	0.0335	0.1673	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	1	0.2008	FALSE	231	217	16	283	0	FALSE	ACH-000662
CORL23_LUNG	CCDC88A--CLHC1	3	14	CCDC88A	8066	chr2:55615914:-	CLHC1	61621	chr2:55408880:-	ONLY_REF_SPLICE	NO	17	13	0.5	0.57	0.0335	0.1562	NEIGHBORS[55279],CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,CLHC1->chr2:55401927-55459699:-,clathrin_heavy_chain_linker_domain_containing_1	CORL23_LUNG	0.5	0.57	0.1897	FALSE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND6--MT-TE	6	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0669	0.0112	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL23_LUNG	0.88	1	0.0781	FALSE	499	1288	110	792	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	3	12	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	28049	8	0	0.65	0.0335	0.1339	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	0.65	0.1674	FALSE	231	217	16	283	0	FALSE	ACH-000662
CORL23_LUNG	MT-TA--MT-TC	4	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0.0892	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL23_LUNG	1	1	0.1338	FALSE	462	80	0	856	0	FALSE	ACH-000662
CORL23_LUNG	AC104389.28--HBE1	5	3	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	120	1	0.06	0.89	0.0558	0.0335	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CORL23_LUNG	0.06	0.89	0.0893	TRUE	0	11	0	26	8	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	4	7	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	26297	2002	0	0.01	0.0446	0.0781	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	0.01	0.1227	FALSE	231	217	16	283	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	3	11	MT-ND4	1759	chrM:11518:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	27523	0	0	1	0.0335	0.1227	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	1	0.1562	FALSE	231	217	16	283	0	FALSE	ACH-000662
CORL23_LUNG	DCBLD2--MDGA2	4	6	DCBLD2	5444	chr3:98600384:-	MDGA2	37993	chr14:47687398:-	ONLY_REF_SPLICE	YES	529	0	0.02	1	0.0446	0.0669	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,MDGA2->MAM_domain_containing_glycosylphosphatidylinositol_anchor_2,chr14:47308826-48144157:-,chr14:47311134-48143999:-	CORL23_LUNG	0.02	1	0.1115	TRUE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND6--MT-TE	5	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0558	0.0223	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL23_LUNG	0.88	1	0.0781	FALSE	499	1288	110	792	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND6--MT-TE	3	10	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0.1116	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL23_LUNG	1	1	0.1451	FALSE	499	1288	110	792	0	FALSE	ACH-000662
CORL23_LUNG	RP11-680G10.1--GSE1	3	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	32	1	0.29	0.0335	0.1116	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CORL23_LUNG	0.29	1	0.1451	TRUE	458	1351	185	561	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	3	9	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	29089	0	0	1	0.0335	0.1004	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	1	0.1339	FALSE	231	217	16	283	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	5	1	MT-ND4	1255	chrM:11014:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	20795	144	0	0.04	0.0558	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	0.04	0.067	FALSE	231	204	14	283	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	29955	0	0	1	0.0335	0.0892	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	1	0.1227	FALSE	231	217	16	283	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	29140	0	0	1	0.0335	0.0892	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	1	0.1227	FALSE	231	217	16	283	0	FALSE	ACH-000662
CORL23_LUNG	PEX14--NCL	5	0	PEX14	13241	chr1:10689909:+	NCL	22031	chr2:232326380:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14,NCL->chr2:232318242-232348352:-,nucleolin	CORL23_LUNG	1	1	0.0558	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	RP11-680G10.1--GSE1	4	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	131	1	0.06	0.0446	0.0446	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CORL23_LUNG	0.06	1	0.0892	TRUE	64	13	3	59	0	FALSE	ACH-000662
CORL23_LUNG	PVT1--CASC11	4	3	PVT1	1202	chr8:128806980:+	CASC11	28460	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1159	0	0.01	1	0.0446	0.0335	LOCAL_INVERSION:+:-:[60566],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CORL23_LUNG	0.01	1	0.0781	FALSE	0	5	0	3	5	FALSE	ACH-000662
CORL23_LUNG	C15orf57--CBX3	3	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	148	69	0.06	0.12	0.0335	0.0669	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CORL23_LUNG	0.06	0.12	0.1004	TRUE	267	562	48	632	0	FALSE	ACH-000662
CORL23_LUNG	CAMTA1--CAMTA1-IT1	4	1	CAMTA1	12077	chr1:7151431:+	CAMTA1-IT1	42018	chr1:7430142:+	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.0446	0.0112	NEIGHBORS_OVERLAP:+:+:[1328],CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+,CAMTA1-IT1->CAMTA1_intronic_transcript_1,chr1:7429003-7430331:+	CORL23_LUNG	0.62	1	0.0558	FALSE	6	24	3	2	0	FALSE	ACH-000662
CORL23_LUNG	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	42	0.56	0.11	0.0446	0.0112	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL23_LUNG	0.11	0.56	0.0558	FALSE	16	356	14	466	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	1	1	0.0446	FALSE	231	204	14	283	0	FALSE	ACH-000662
CORL23_LUNG	PDE6B--PPP2R2D	4	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	CORL23_LUNG	1	1	0.0446	TRUE	7	65	3	22	0	FALSE	ACH-000662
CORL23_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	19326	1	0	0.8	0.0335	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL23_LUNG	0	0.8	0.0447	FALSE	230	193	14	283	0	FALSE	ACH-000662
CORL23_LUNG	RP11-114H23.1--RP11-114H23.2	1	9	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	5	9	0.67	0.53	0.0112	0.1004	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CORL23_LUNG	0.53	0.67	0.1116	FALSE	81	155	12	160	0	FALSE	ACH-000662
CORL23_LUNG	SCAF8--RP11-103H7.2	3	1	SCAF8	19163	chr6:155143543:+	RP11-103H7.2	30141	chr8:127512122:+	ONLY_REF_SPLICE	YES	75	0	0.05	1	0.0335	0.0112	SCAF8->SR-related_CTD_associated_factor_8,chr6:155054459-155155192:+,RP11-103H7.2->chr8:127510394-127512548:+	CORL23_LUNG	0.05	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	AC104389.28--HBE1	3	0	AC104389.28	1084	chr11:5526799:-	HBE1	13982	chr11:5291154:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CORL23_LUNG	1	1	0.0335	TRUE	0	16	0	53	13	FALSE	ACH-000662
CORL23_LUNG	EIF3B--MAD1L1	3	0	EIF3B	15726	chr7:2416710:+	MAD1L1	50054	chr7:2041756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	CORL23_LUNG	1	1	0.0335	TRUE	0	13	0	3	1	TRUE	ACH-000662
CORL23_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL23_LUNG	1	1	0.0335	FALSE	499	1288	110	792	0	FALSE	ACH-000662
CORL23_LUNG	MT-TA--MT-TN	3	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CORL23_LUNG	1	1	0.0335	FALSE	369	2501	205	193	0	FALSE	ACH-000662
CORL23_LUNG	PCAT1--RP11-622O11.4	3	0	PCAT1	2153	chr8:127890035:+	RP11-622O11.4	11944	chr8:127011397:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-622O11.4->chr8:127011238-127013245:-	CORL23_LUNG	1	1	0.0335	TRUE	0	1	0	1	1	TRUE	ACH-000662
CORL23_LUNG	RASSF8--TULP3	3	0	RASSF8	9484	chr12:26208379:+	TULP3	24700	chr12:3018695:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+,TULP3->chr12:2986389-3050306:+,tubby_like_protein_3	CORL23_LUNG	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	TMEM261--RPS19	3	0	TMEM261	4773	chr9:7798540:-	RPS19	10160	chr19:42364324:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	TMEM261->chr9:7796490-7888380:-,transmembrane_protein_261,RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19	CORL23_LUNG	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	CASC1--FGF23	1	7	CASC1	11198	chr12:25299935:-	FGF23	25164	chr12:4481863:-	ONLY_REF_SPLICE	YES	1	2	0.89	0.8	0.0112	0.0781	CASC1->cancer_susceptibility_candidate_1,chr12:25261354-25348096:-,FGF23->ArcherDX_panel,FoundationOne_panel,chr12:4477393-4488894:-,fibroblast_growth_factor_23	CORL23_LUNG	0.8	0.89	0.0893	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	CCNB1--CCDC125	2	2	CCNB1	1274	chr5:68463110:+	CCDC125	24647	chr5:68588189:-	ONLY_REF_SPLICE	YES	1023	61	0	0.06	0.0223	0.0223	CCNB1->Oncogene{Bushman},chr5:68462837-68474072:+,cyclin_B1,CCDC125->chr5:68576002-68628636:-,coiled-coil_domain_containing_125	CORL23_LUNG	0	0.06	0.0446	FALSE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	CCNB1--CCDC125	2	2	CCNB1	1274	chr5:68463110:+	CCDC125	25822	chr5:68581294:-	ONLY_REF_SPLICE	YES	1023	45	0	0.08	0.0223	0.0223	CCNB1->Oncogene{Bushman},chr5:68462837-68474072:+,cyclin_B1,CCDC125->chr5:68576002-68628636:-,coiled-coil_domain_containing_125	CORL23_LUNG	0	0.08	0.0446	FALSE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	CTC-786C10.1--GSE1	2	2	CTC-786C10.1	1532	chr16:85205413:+	GSE1	10562	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	131	1	0.03	0.0223	0.0223	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CORL23_LUNG	0.03	1	0.0446	TRUE	0	0	0	2	0	FALSE	ACH-000662
CORL23_LUNG	PVT1--CASC11	2	2	PVT1	6936	chr8:128867565:+	CASC11	33740	chr8:128713084:-	ONLY_REF_SPLICE	NO	1155	7	0	0.36	0.0223	0.0223	LOCAL_INVERSION:+:-:[60566],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	CORL23_LUNG	0	0.36	0.0446	FALSE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0223	0.0223	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CORL23_LUNG	0.8	1	0.0446	FALSE	467	2173	244	435	0	FALSE	ACH-000662
CORL23_LUNG	RP11-307P5.1--SASH1	1	5	RP11-307P5.1	4371	chr6:148054947:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	208	17	0.03	0.26	0.0112	0.0558	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	CORL23_LUNG	0.03	0.26	0.067	TRUE	0	0	0	11	0	FALSE	ACH-000662
CORL23_LUNG	VTI1A--RP11-57H14.3	2	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	54	0	0.05	1	0.0223	0.0112	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	CORL23_LUNG	0.05	1	0.0335	FALSE	272	151	14	158	0	FALSE	ACH-000662
CORL23_LUNG	ZFAS1--RNF149	2	1	ZFAS1	2031	chr20:47895745:+	RNF149	20350	chr2:101888206:-	ONLY_REF_SPLICE	NO	1469	12	0	0.2	0.0223	0.0112	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	CORL23_LUNG	0	0.2	0.0335	FALSE	0	1	0	3	1	FALSE	ACH-000662
CORL23_LUNG	AC104389.28--HBE1	2	0	AC104389.28	1084	chr11:5526799:-	HBE1	14230	chr11:5290906:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CORL23_LUNG	1	1	0.0223	TRUE	0	16	0	53	13	FALSE	ACH-000662
CORL23_LUNG	C11orf57--THOC2	2	0	C11orf57	4850	chr11:111951282:+	THOC2	45411	chrX:122745367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	C11orf57->chr11:111944810-111955874:+,chromosome_11_open_reading_frame_57,THOC2->THO_complex_2,chrX:122734412-122866906:-	CORL23_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	CMTM8--CMTM7	2	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	CORL23_LUNG	1	1	0.0223	FALSE	118	557	29	88	0	FALSE	ACH-000662
CORL23_LUNG	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	CORL23_LUNG	1	1	0.0223	TRUE	347	1186	183	220	0	FALSE	ACH-000662
CORL23_LUNG	DNMBP--PHF21A	2	0	DNMBP	3360	chr10:101728872:-	PHF21A	52368	chr11:45959863:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	DNMBP->chr10:101635334-101769676:-,dynamin_binding_protein,PHF21A->PHD_finger_protein_21A,chr11:45950871-46142985:-	CORL23_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	IFT74--TEK	2	0	IFT74	1425	chr9:26947461:+	TEK	30891	chr9:27157829:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NEIGHBORS[46211],IFT74->chr9:26947037-27062928:+,intraflagellar_transport_74,TEK->Oncogene{Bushman},TEK_receptor_tyrosine_kinase,chr9:27109139-27230173:+	CORL23_LUNG	1	1	0.0223	FALSE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	IMMP2L--CHCHD3	2	0	IMMP2L	4976	chr7:111127294:-	CHCHD3	19985	chr7:132754989:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3	CORL23_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	ITSN1--TXNL4A	2	0	ITSN1	25806	chr21:35172233:+	TXNL4A	75616	chr18:77737701:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	ITSN1->chr21:35014706-35272165:+,intersectin_1,TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A	CORL23_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	KPNA4--IFT80	2	0	KPNA4	9938	chr3:160239567:-	IFT80	48296	chr3:160003656:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NEIGHBORS[95115],KPNA4->chr3:160212783-160283376:-,karyopherin_subunit_alpha_4,IFT80->chr3:159974774-160117668:-,intraflagellar_transport_80	CORL23_LUNG	1	1	0.0223	FALSE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	POMT2--ALKBH1	2	0	POMT2	1451	chr14:77786777:-	ALKBH1	34182	chr14:78146313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	POMT2->chr14:77741299-77787227:-,protein_O-mannosyltransferase_2,ALKBH1->alkB_homolog_1,_histone_H2A_dioxygenase,chr14:78138747-78174363:-	CORL23_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	SETD8--CDK2AP1	2	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	CORL23_LUNG	1	1	0.0223	TRUE	0	0	0	18	0	TRUE	ACH-000662
CORL23_LUNG	STX18-AS1--MSX1	2	0	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	CORL23_LUNG	1	1	0.0223	TRUE	37	101	7	40	0	FALSE	ACH-000662
CORL23_LUNG	TEAD4--TSPAN9	2	0	TEAD4	2024	chr12:3069519:+	TSPAN9	19179	chr12:3310343:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[36682],TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,TSPAN9->chr12:3186521-3395730:+,tetraspanin_9	CORL23_LUNG	1	1	0.0223	FALSE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	TSPAN9--TEAD4	2	0	TSPAN9	1099	chr12:3186619:+	TEAD4	29959	chr12:3147134:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LOCAL_REARRANGEMENT:+:[36682],TSPAN9->chr12:3186521-3395730:+,tetraspanin_9,TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+	CORL23_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000662
CORL23_LUNG	YWHAE--CRK	1	4	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	3677	123	0	0.04	0.0112	0.0446	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	CORL23_LUNG	0	0.04	0.0558	FALSE	6	50	7	115	0	FALSE	ACH-000662
CORL23_LUNG	CCDC88A--CLHC1	1	3	CCDC88A	8066	chr2:55615914:-	CLHC1	62653	chr2:55407848:-	ONLY_REF_SPLICE	YES	17	23	0.19	0.15	0.0112	0.0335	NEIGHBORS[55279],CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,CLHC1->chr2:55401927-55459699:-,clathrin_heavy_chain_linker_domain_containing_1	CORL23_LUNG	0.15	0.19	0.0447	FALSE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	CTC-786C10.1--GSE1	1	3	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	64	1	0.06	0.0112	0.0335	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CORL23_LUNG	0.06	1	0.0447	TRUE	2	3	0	21	0	FALSE	ACH-000662
CORL23_LUNG	FARS2--RP3-380B8.4	1	3	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	NO	37	0	0.1	1	0.0112	0.0335	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	CORL23_LUNG	0.1	1	0.0447	FALSE	27	82	4	18	0	FALSE	ACH-000662
CORL23_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0112	0.0223	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CORL23_LUNG	1	1	0.0335	FALSE	407	2205	196	549	0	FALSE	ACH-000662
CORL23_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0112	0.0223	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CORL23_LUNG	1	1	0.0335	FALSE	515	4851	409	746	0	FALSE	ACH-000662
CORL23_LUNG	CTB-147C22.9--KLK6	1	1	CTB-147C22.9	1144	chr19:51471609:+	KLK6	9098	chr19:51471368:-	ONLY_REF_SPLICE	YES	33	2350	0.06	0	0.0112	0.0112	NEIGHBORS_OVERLAP:+:-:[1463],CTB-147C22.9->chr19:51471466-51515385:+,KLK6->Oncogene{Bushman},chr19:51461887-51472929:-,kallikrein_related_peptidase_6	CORL23_LUNG	0	0.06	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	ECI1--KCTD5	1	1	ECI1	5620	chr16:2293047:-	KCTD5	19834	chr16:2757299:+	ONLY_REF_SPLICE	NO	394	578	0.01	0	0.0112	0.0112	ECI1->chr16:2289396-2302301:-,enoyl-CoA_delta_isomerase_1,KCTD5->chr16:2732476-2759031:+,potassium_channel_tetramerization_domain_containing_5	CORL23_LUNG	0	0.01	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	ECI1--KCTD5	1	1	ECI1	3113	chr16:2296860:-	KCTD5	19834	chr16:2757299:+	ONLY_REF_SPLICE	YES	207	578	0.01	0	0.0112	0.0112	ECI1->chr16:2289396-2302301:-,enoyl-CoA_delta_isomerase_1,KCTD5->chr16:2732476-2759031:+,potassium_channel_tetramerization_domain_containing_5	CORL23_LUNG	0	0.01	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	FAM20B--NOSIP	1	1	FAM20B	2805	chr1:179013359:+	NOSIP	22419	chr19:50062235:-	ONLY_REF_SPLICE	YES	65	576	0.03	0	0.0112	0.0112	FAM20B->chr1:178994939-179045697:+,family_with_sequence_similarity_20_member_B,NOSIP->chr19:50058968-50093519:-,nitric_oxide_synthase_interacting_protein	CORL23_LUNG	0	0.03	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	FARP2--THAP4	1	1	FARP2	2877	chr2:242312705:+	THAP4	56372	chr2:242524140:-	ONLY_REF_SPLICE	YES	33	353	0.06	0.01	0.0112	0.0112	{Klijn_CCL:Skin=1},LOCAL_INVERSION:+:-:[89564],FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+,THAP4->THAP_domain_containing_4,chr2:242523820-242576864:-	CORL23_LUNG	0.01	0.06	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	NAP1L1--RP11-114H23.2	1	1	NAP1L1	3238	chr12:76467983:-	RP11-114H23.2	25306	chr12:76088755:-	ONLY_REF_SPLICE	NO	2732	0	0	1	0.0112	0.0112	NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1,RP11-114H23.2->chr12:76087790-76092596:-	CORL23_LUNG	0	1	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	RCC1--MTCH2	1	1	RCC1	2920	chr1:28835417:+	MTCH2	27984	chr11:47647293:-	ONLY_REF_SPLICE	NO	75	612	0.03	0	0.0112	0.0112	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	CORL23_LUNG	0	0.03	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000662
CORL23_LUNG	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	42	0.22	0.05	0.0112	0.0112	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL23_LUNG	0.05	0.22	0.0224	FALSE	0	48	1	163	0	FALSE	ACH-000662
CORL23_LUNG	RP11-307P5.1--SASH1	1	1	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	NO	9	17	0.18	0.11	0.0112	0.0112	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	CORL23_LUNG	0.11	0.18	0.0224	TRUE	0	0	0	16	0	TRUE	ACH-000662
CORL23_LUNG	SPINT1--AKAP8	1	1	SPINT1	2012	chr15:41137227:+	AKAP8	20427	chr19:15473062:-	ONLY_REF_SPLICE	YES	440	150	0	0.01	0.0112	0.0112	SPINT1->Oncogene{Bushman},chr15:41136216-41150405:+,serine_peptidase_inhibitor,_Kunitz_type_1,AKAP8->A-kinase_anchoring_protein_8,chr19:15464196-15490609:-	CORL23_LUNG	0	0.01	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000662
JHOM1_OVARY	RNASE10--PTGR1	104	57	RNASE10	1483	chr14:20974178:+	PTGR1	16126	chr9:114337122:-	ONLY_REF_SPLICE	YES	0	183	1	0.47	1.086	0.5952	GTEx_FI:{Liver=[count:3=pct:2.5],Lung=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Small_Intestine=[count:1=pct:1.8],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Visceral_(Omentum)=2,Lung=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1},RNASE10->Oncogene{Bushman},chr14:20973696-20979328:+,ribonuclease_A_family_member_10_(inactive),PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	JHOM1_OVARY	0.47	1	1.6812	TRUE	9	1	0	6	0	FALSE	ACH-000237
JHOM1_OVARY	TIMM23B--LINC00843	99	44	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0338	0.4595	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHOM1_OVARY	1	1	1.4933	TRUE	508	994	45	981	0	FALSE	ACH-000237
JHOM1_OVARY	RNF10--RAB35	54	46	RNF10	2489	chr12:120972771:+	RAB35	28023	chr12:120541753:-	ONLY_REF_SPLICE	YES	159	44	0.39	0.69	0.5639	0.4803	RNF10->chr12:120971283-121015397:+,ring_finger_protein_10,RAB35->RAB35,_member_RAS_oncogene_family,chr12:120532899-120555306:-	JHOM1_OVARY	0.39	0.69	1.0442	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	TIMM23--RP11-464F9.1	55	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	300	3	0.17	0.95	0.5743	0.0835	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JHOM1_OVARY	0.17	0.95	0.6578	TRUE	519	3926	326	965	0	FALSE	ACH-000237
JHOM1_OVARY	PRPF39--UHRF1BP1L	51	22	PRPF39	1151	chr14:45553452:+	UHRF1BP1L	36220	chr12:100451524:-	ONLY_REF_SPLICE	YES	74	10	0.5	0.88	0.5325	0.2297	PRPF39->chr14:45553302-45585485:+,pre-mRNA_processing_factor_39,UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-	JHOM1_OVARY	0.5	0.88	0.7622	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	MT-TA--MT-TC	32	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3341	0.0313	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOM1_OVARY	1	1	0.3654	FALSE	462	80	0	856	0	FALSE	ACH-000237
JHOM1_OVARY	MT-ND6--MT-TE	25	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2611	0.0104	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOM1_OVARY	1	1	0.2715	FALSE	499	1288	110	792	0	FALSE	ACH-000237
JHOM1_OVARY	SAMD5--SASH1	24	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2506	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	JHOM1_OVARY	1	1	0.2506	TRUE	53	396	64	110	0	FALSE	ACH-000237
JHOM1_OVARY	MTAP--RP11-399D6.2	20	10	MTAP	1239	chr9:21802780:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2088	0.1044	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	JHOM1_OVARY	1	1	0.3132	TRUE	0	2	0	1	2	TRUE	ACH-000237
JHOM1_OVARY	SLCO2B1--RAB30	19	7	SLCO2B1	16498	chr11:74907724:+	RAB30	30742	chr11:82745824:-	ONLY_REF_SPLICE	YES	274	57	0.09	0.31	0.1984	0.0731	SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1,RAB30->RAB30,_member_RAS_oncogene_family,chr11:82684175-82782965:-	JHOM1_OVARY	0.09	0.31	0.2715	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	PSAP--GAPDH	19	6	PSAP	10123	chr10:73579538:-	GAPDH	20232	chr12:6646882:+	INCL_NON_REF_SPLICE	YES	6045	20068	0	0	0.1984	0.0627	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	JHOM1_OVARY	0	0	0.2611	TRUE	0	0	0	4	0	FALSE	ACH-000237
JHOM1_OVARY	MT-ND6--MT-ND5	18	1	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1779	1	0.01	0.188	0.0104	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	JHOM1_OVARY	0.01	1	0.1984	FALSE	101	855	57	72	0	FALSE	ACH-000237
JHOM1_OVARY	RNASE10--PTGR1	3	50	RNASE10	1483	chr14:20974178:+	PTGR1	16130	chr9:114337118:-	INCL_NON_REF_SPLICE	YES	0	180	1	0.23	0.0313	0.5221	GTEx_FI:{Liver=[count:3=pct:2.5],Lung=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Small_Intestine=[count:1=pct:1.8],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Visceral_(Omentum)=2,Lung=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1},RNASE10->Oncogene{Bushman},chr14:20973696-20979328:+,ribonuclease_A_family_member_10_(inactive),PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	JHOM1_OVARY	0.23	1	0.5534	TRUE	9	1	0	6	0	FALSE	ACH-000237
JHOM1_OVARY	COQ5--TMEM132B	14	4	COQ5	6560	chr12:120960017:-	TMEM132B	19649	chr12:125900077:+	ONLY_REF_SPLICE	YES	51	0	0.26	1	0.1462	0.0418	COQ5->chr12:120941077-120972237:-,coenzyme_Q5,_methyltransferase,TMEM132B->chr12:125671382-126146917:+,transmembrane_protein_132B	JHOM1_OVARY	0.26	1	0.188	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	AGPS--HOXD10	13	6	AGPS	15086	chr2:178364458:+	HOXD10	30347	chr2:176973635:+	INCL_NON_REF_SPLICE	YES	82	0	0.19	1	0.1357	0.0627	AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+,HOXD10->chr2:176973518-176984670:+,homeobox_D10	JHOM1_OVARY	0.19	1	0.1984	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	PSAP--GAPDH	12	3	PSAP	8533	chr10:73581668:-	GAPDH	20191	chr12:6646841:+	INCL_NON_REF_SPLICE	YES	4643	20125	0	0	0.1253	0.0313	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	JHOM1_OVARY	0	0	0.1566	TRUE	0	0	0	8	0	FALSE	ACH-000237
JHOM1_OVARY	MT-ND6--MT-ND5	12	1	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	7	1814	0.65	0.01	0.1253	0.0104	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	JHOM1_OVARY	0.01	0.65	0.1357	FALSE	101	855	57	72	0	FALSE	ACH-000237
JHOM1_OVARY	HSPBP1--GRK5	11	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1149	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	JHOM1_OVARY	1	1	0.1149	TRUE	1	39	0	134	39	FALSE	ACH-000237
JHOM1_OVARY	HK3--UIMC1	10	3	HK3	7737	chr5:176314003:-	UIMC1	30920	chr5:176338390:-	ONLY_REF_SPLICE	YES	0	72	1	0.15	0.1044	0.0313	LOCAL_REARRANGEMENT:-:[5673],HK3->chr5:176307870-176326333:-,hexokinase_3,UIMC1->chr5:176332006-176449634:-,ubiquitin_interaction_motif_containing_1	JHOM1_OVARY	0.15	1	0.1357	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	MT-ND6--MT-TE	7	13	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0731	0.1357	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOM1_OVARY	0.95	1	0.2088	FALSE	499	1288	110	792	0	FALSE	ACH-000237
JHOM1_OVARY	RP11-680G10.1--GSE1	10	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	62	1	0.15	0.1044	0.0104	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHOM1_OVARY	0.15	1	0.1148	TRUE	465	1949	224	605	0	FALSE	ACH-000237
JHOM1_OVARY	XXbac-BPG252P9.9--IFI27	8	7	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	3813	6	0	0.71	0.0835	0.0731	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	JHOM1_OVARY	0	0.71	0.1566	TRUE	0	2	0	13	2	TRUE	ACH-000237
JHOM1_OVARY	MT-ND6--MT-TE	7	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0731	0.1044	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOM1_OVARY	0.94	1	0.1775	FALSE	499	1288	110	792	0	FALSE	ACH-000237
JHOM1_OVARY	AGPS--HOXD8	8	5	AGPS	15086	chr2:178364458:+	HOXD8	31853	chr2:176996045:+	ONLY_REF_SPLICE	YES	82	0	0.14	1	0.0835	0.0522	AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+,HOXD8->chr2:176994422-176997423:+,homeobox_D8	JHOM1_OVARY	0.14	1	0.1357	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	MT-ND6--MT-TE	9	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.094	0.0104	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOM1_OVARY	1	1	0.1044	FALSE	499	1288	110	792	0	FALSE	ACH-000237
JHOM1_OVARY	RP11-123O10.4--GRIP1	9	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.094	0.0104	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHOM1_OVARY	1	1	0.1044	FALSE	416	2512	207	587	0	FALSE	ACH-000237
JHOM1_OVARY	MT-ND4--MT-CO1	7	7	MT-ND4	1773	chrM:11532:+	MT-CO1	5916	chrM:6441:+	INCL_NON_REF_SPLICE	YES	13116	16717	0	0	0.0731	0.0731	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOM1_OVARY	0	0	0.1462	FALSE	19	92	11	16	0	FALSE	ACH-000237
JHOM1_OVARY	MT-TA--MT-TC	8	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0835	0.0313	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOM1_OVARY	1	1	0.1148	FALSE	462	80	0	856	0	FALSE	ACH-000237
JHOM1_OVARY	RP11-680G10.1--GSE1	7	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	17	1	0.43	0.0731	0.0627	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHOM1_OVARY	0.43	1	0.1358	TRUE	458	1351	185	561	0	FALSE	ACH-000237
JHOM1_OVARY	NRIP1--AF127936.7	8	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0835	0.0104	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHOM1_OVARY	0.9	1	0.0939	FALSE	292	1546	117	613	0	FALSE	ACH-000237
JHOM1_OVARY	FTH1--ACTG1	8	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0835	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	JHOM1_OVARY	1	1	0.0835	TRUE	0	0	0	64	0	FALSE	ACH-000237
JHOM1_OVARY	RNF10--RAB35	3	19	RNF10	2489	chr12:120972771:+	RAB35	29455	chr12:120536958:-	ONLY_REF_SPLICE	YES	159	73	0.12	0.23	0.0313	0.1984	RNF10->chr12:120971283-121015397:+,ring_finger_protein_10,RAB35->RAB35,_member_RAS_oncogene_family,chr12:120532899-120555306:-	JHOM1_OVARY	0.12	0.23	0.2297	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	NRIP1--AF127936.7	7	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.39	1	0.0731	0.0209	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHOM1_OVARY	0.39	1	0.094	FALSE	125	705	46	456	0	FALSE	ACH-000237
JHOM1_OVARY	HSP90AB1--MT-RNR2	7	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2683	0	0	1	0.0731	0.0104	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOM1_OVARY	0	1	0.0835	FALSE	13	9	0	364	0	FALSE	ACH-000237
JHOM1_OVARY	FTH1--ACTG1	7	0	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0731	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	JHOM1_OVARY	1	1	0.0731	TRUE	0	0	0	64	0	FALSE	ACH-000237
JHOM1_OVARY	FCHSD2--SHANK2	6	3	FCHSD2	4185	chr11:72794740:-	SHANK2	31894	chr11:70935842:-	ONLY_REF_SPLICE	YES	10	5	0.47	0.64	0.0627	0.0313	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	JHOM1_OVARY	0.47	0.64	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	MYH9--SPP1	6	3	MYH9	34688	chr22:36684944:-	SPP1	44649	chr4:88896874:+	INCL_NON_REF_SPLICE	YES	1515	0	0.01	1	0.0627	0.0313	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	JHOM1_OVARY	0.01	1	0.094	FALSE	0	0	0	2	0	FALSE	ACH-000237
JHOM1_OVARY	RNASE10--PTGR1	1	23	RNASE10	1483	chr14:20974178:+	PTGR1	17235	chr9:114332489:-	ONLY_REF_SPLICE	YES	0	150	1	0.14	0.0104	0.2402	GTEx_FI:{Liver=[count:3=pct:2.5],Lung=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Small_Intestine=[count:1=pct:1.8],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Visceral_(Omentum)=2,Lung=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1},RNASE10->Oncogene{Bushman},chr14:20973696-20979328:+,ribonuclease_A_family_member_10_(inactive),PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	JHOM1_OVARY	0.14	1	0.2506	TRUE	2	0	0	3	0	FALSE	ACH-000237
JHOM1_OVARY	MT-ND4--MT-CO1	3	13	MT-ND4	2122	chrM:11881:+	MT-CO1	5909	chrM:6434:+	INCL_NON_REF_SPLICE	NO	8712	16549	0	0	0.0313	0.1357	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOM1_OVARY	0	0	0.167	FALSE	19	92	11	16	0	FALSE	ACH-000237
JHOM1_OVARY	MT-ND4--MT-CO1	4	8	MT-ND4	1910	chrM:11669:+	MT-CO1	5892	chrM:6417:+	INCL_NON_REF_SPLICE	YES	12697	16097	0	0	0.0418	0.0835	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOM1_OVARY	0	0	0.1253	FALSE	19	92	11	16	0	FALSE	ACH-000237
JHOM1_OVARY	MT-ND6--MT-TE	3	12	MT-ND6	1153	chrM:14521:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0313	0.1253	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOM1_OVARY	0.94	1	0.1566	FALSE	499	1288	110	792	0	FALSE	ACH-000237
JHOM1_OVARY	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOM1_OVARY	1	1	0.0627	FALSE	462	80	0	856	0	FALSE	ACH-000237
JHOM1_OVARY	MYH9--SPP1	5	2	MYH9	25917	chr22:36696301:-	SPP1	44641	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	885	0	0.01	1	0.0522	0.0209	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	JHOM1_OVARY	0.01	1	0.0731	FALSE	0	0	0	2	0	FALSE	ACH-000237
JHOM1_OVARY	PRR16--CTD-2334D19.1	5	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	15	0	0.32	1	0.0522	0.0209	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	JHOM1_OVARY	0.32	1	0.0731	FALSE	56	216	12	147	0	FALSE	ACH-000237
JHOM1_OVARY	MT-ND6--MT-ND5	5	1	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	2	509	0.75	0.01	0.0522	0.0104	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	JHOM1_OVARY	0.01	0.75	0.0626	FALSE	101	855	57	72	0	FALSE	ACH-000237
JHOM1_OVARY	PRPF39--UHRF1BP1L	4	5	PRPF39	1151	chr14:45553452:+	UHRF1BP1L	38049	chr12:100444999:-	ONLY_REF_SPLICE	YES	74	31	0.11	0.23	0.0418	0.0522	PRPF39->chr14:45553302-45585485:+,pre-mRNA_processing_factor_39,UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-	JHOM1_OVARY	0.11	0.23	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	MT-ATP6--MT-CO1	3	8	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2373	18780	0	0	0.0313	0.0835	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOM1_OVARY	0	0	0.1148	FALSE	183	104	9	328	0	FALSE	ACH-000237
JHOM1_OVARY	MTAP--RP11-399D6.2	2	11	MTAP	1408	chr9:21802949:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0.1149	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	JHOM1_OVARY	1	1	0.1358	TRUE	0	2	0	1	2	TRUE	ACH-000237
JHOM1_OVARY	PSAP--GAPDH	4	3	PSAP	8522	chr10:73581679:-	GAPDH	20181	chr12:6646831:+	INCL_NON_REF_SPLICE	YES	4715	19345	0	0	0.0418	0.0313	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	JHOM1_OVARY	0	0	0.0731	FALSE	0	0	0	8	0	FALSE	ACH-000237
JHOM1_OVARY	ACTN4--MT-CO1	4	2	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	2553	18244	0	0	0.0418	0.0209	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOM1_OVARY	0	0	0.0627	FALSE	0	0	0	30	0	FALSE	ACH-000237
JHOM1_OVARY	MT-ATP6--MT-CO1	3	6	MT-ATP6	1444	chrM:8970:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	7096	16131	0	0	0.0313	0.0627	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOM1_OVARY	0	0	0.094	FALSE	183	104	9	328	0	FALSE	ACH-000237
JHOM1_OVARY	MT-ND4--MT-CO1	3	6	MT-ND4	1975	chrM:11734:+	MT-CO1	6078	chrM:6603:+	INCL_NON_REF_SPLICE	YES	12199	18301	0	0	0.0313	0.0627	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOM1_OVARY	0	0	0.094	FALSE	19	92	11	16	0	FALSE	ACH-000237
JHOM1_OVARY	RP5-940J5.9--TUBA4A	4	1	RP5-940J5.9	1532	chr12:6647005:-	TUBA4A	8462	chr2:220116803:-	INCL_NON_REF_SPLICE	YES	1	872	0.83	0.01	0.0418	0.0104	RP5-940J5.9->chr12:6646960-6647536:-,TUBA4A->chr2:220114433-220142892:-,tubulin_alpha_4a	JHOM1_OVARY	0.01	0.83	0.0522	FALSE	0	0	0	1	0	FALSE	ACH-000237
JHOM1_OVARY	AC016629.8--COL4A3	3	4	AC016629.8	1281	chr19:59070776:+	COL4A3	32442	chr2:228137665:+	ONLY_REF_SPLICE	YES	12	80	0.37	0.08	0.0313	0.0418	AC016629.8->chr19:59070496-59086164:+,COL4A3->Oncogene{Bushman},chr2:228029281-228179508:+,collagen_type_IV_alpha_3	JHOM1_OVARY	0.08	0.37	0.0731	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	MT-ND4--MT-CO1	3	3	MT-ND4	1311	chrM:11070:+	MT-CO1	5896	chrM:6421:+	INCL_NON_REF_SPLICE	YES	14271	15885	0	0	0.0313	0.0313	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOM1_OVARY	0	0	0.0626	FALSE	19	90	11	16	0	FALSE	ACH-000237
JHOM1_OVARY	MT-ND4--MT-CO1	3	3	MT-ND4	1985	chrM:11744:+	MT-CO1	6451	chrM:6976:+	INCL_NON_REF_SPLICE	YES	12197	18876	0	0	0.0313	0.0313	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOM1_OVARY	0	0	0.0626	FALSE	19	92	11	16	0	FALSE	ACH-000237
JHOM1_OVARY	MTAP--RP11-399D6.2	1	11	MTAP	3033	chr9:21808999:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0104	0.1149	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	JHOM1_OVARY	1	1	0.1253	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	MT-ND4--MT-CO1	3	2	MT-ND4	1209	chrM:10968:+	MT-CO1	6078	chrM:6603:+	INCL_NON_REF_SPLICE	NO	10576	18301	0	0	0.0313	0.0209	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOM1_OVARY	0	0	0.0522	FALSE	19	89	11	16	0	FALSE	ACH-000237
JHOM1_OVARY	AGPS--HOXD8	2	5	AGPS	15086	chr2:178364458:+	HOXD8	31856	chr2:176996048:+	ONLY_REF_SPLICE	YES	82	0	0.08	1	0.0209	0.0522	AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+,HOXD8->chr2:176994422-176997423:+,homeobox_D8	JHOM1_OVARY	0.08	1	0.0731	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	CTD-2337A12.1--CAST	3	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	63	1	0.06	0.0313	0.0104	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	JHOM1_OVARY	0.06	1	0.0417	TRUE	347	1186	183	220	0	FALSE	ACH-000237
JHOM1_OVARY	HSPBP1--GRK5	3	0	HSPBP1	1861	chr19:55790889:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	JHOM1_OVARY	1	1	0.0313	TRUE	1	39	0	134	39	FALSE	ACH-000237
JHOM1_OVARY	HSPBP1--GRK5	3	0	HSPBP1	1858	chr19:55790892:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	JHOM1_OVARY	1	1	0.0313	TRUE	1	39	0	134	39	FALSE	ACH-000237
JHOM1_OVARY	LAMP1--PKM	3	0	LAMP1	10141	chr13:113976769:+	PKM	15012	chr15:72523512:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	JHOM1_OVARY	1	1	0.0313	TRUE	0	0	0	3	0	TRUE	ACH-000237
JHOM1_OVARY	MT-ND6--MT-ND5	3	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	JHOM1_OVARY	1	1	0.0313	FALSE	101	855	57	72	0	FALSE	ACH-000237
JHOM1_OVARY	NUDT1--HACE1	3	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	JHOM1_OVARY	1	1	0.0313	TRUE	1	20	0	20	17	FALSE	ACH-000237
JHOM1_OVARY	PUF60--SPP1	3	0	PUF60	7610	chr8:144904055:-	SPP1	16018	chr4:88896880:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	PUF60->chr8:144898514-144912029:-,poly(U)_binding_splicing_factor_60KDa,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	JHOM1_OVARY	1	1	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	COQ5--TMEM132B	2	2	COQ5	2370	chr12:120966743:-	TMEM132B	19649	chr12:125900077:+	ONLY_REF_SPLICE	YES	57	0	0.07	1	0.0209	0.0209	COQ5->chr12:120941077-120972237:-,coenzyme_Q5,_methyltransferase,TMEM132B->chr12:125671382-126146917:+,transmembrane_protein_132B	JHOM1_OVARY	0.07	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	23	0	0.15	1	0.0209	0.0209	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHOM1_OVARY	0.15	1	0.0418	FALSE	164	806	69	479	0	FALSE	ACH-000237
JHOM1_OVARY	HK3--UIMC1	2	1	HK3	7288	chr5:176314452:-	UIMC1	30920	chr5:176338390:-	ONLY_REF_SPLICE	YES	9	72	0.25	0.04	0.0209	0.0104	LOCAL_REARRANGEMENT:-:[5673],HK3->chr5:176307870-176326333:-,hexokinase_3,UIMC1->chr5:176332006-176449634:-,ubiquitin_interaction_motif_containing_1	JHOM1_OVARY	0.04	0.25	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	ARHGAP44--TPM1	2	0	ARHGAP44	1353	chr17:12693208:+	TPM1	39235	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ARHGAP44->Rho_GTPase_activating_protein_44,chr17:12692856-12894960:+,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	JHOM1_OVARY	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	CMTM8--CMTM7	2	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	JHOM1_OVARY	1	1	0.0209	FALSE	118	557	29	88	0	FALSE	ACH-000237
JHOM1_OVARY	KIF26B--SMYD3	2	0	KIF26B	2699	chr1:245319985:+	SMYD3	58974	chr1:246027188:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	JHOM1_OVARY	1	1	0.0209	TRUE	0	2	0	1	2	TRUE	ACH-000237
JHOM1_OVARY	MATR3--CTNNA1	2	0	MATR3	9772	chr5:138629494:+	CTNNA1	45982	chr5:138145727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	JHOM1_OVARY	1	1	0.0209	TRUE	3	14	0	14	0	FALSE	ACH-000237
JHOM1_OVARY	RB1--ITM2B	2	0	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	JHOM1_OVARY	1	1	0.0209	TRUE	53	73	8	19	0	FALSE	ACH-000237
JHOM1_OVARY	RBMS3--GNB1	2	0	RBMS3	1775	chr3:29323247:+	GNB1	48181	chr1:1718876:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	JHOM1_OVARY	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	RP11-120D5.1--MID1	2	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHOM1_OVARY	1	1	0.0209	FALSE	0	48	1	163	0	FALSE	ACH-000237
JHOM1_OVARY	SLCO2B1--RAB30	1	4	SLCO2B1	15072	chr11:74904620:+	RAB30	30742	chr11:82745824:-	ONLY_REF_SPLICE	NO	344	57	0.01	0.08	0.0104	0.0418	SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1,RAB30->RAB30,_member_RAS_oncogene_family,chr11:82684175-82782965:-	JHOM1_OVARY	0.01	0.08	0.0522	FALSE	0	0	0	1	0	FALSE	ACH-000237
JHOM1_OVARY	SQSTM1--CARS	2	0	SQSTM1	11218	chr5:179250053:+	CARS	27374	chr11:3060522:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	SQSTM1->chr5:179233388-179265078:+,sequestosome_1,CARS->Oncogene{Bushman},chr11:3022152-3078843:-,cysteinyl-tRNA_synthetase	JHOM1_OVARY	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	STK4--YWHAB	2	0	STK4	15640	chr20:43653771:+	YWHAB	28745	chr20:43530172:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[57942],STK4->Oncogene{Bushman},chr20:43595115-43708600:+,serine/threonine_kinase_4,YWHAB->chr20:43514317-43537173:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_beta	JHOM1_OVARY	1	1	0.0209	TRUE	2	4	0	2	0	FALSE	ACH-000237
JHOM1_OVARY	STX7--HERC4	2	0	STX7	2335	chr6:132824585:-	HERC4	44704	chr10:69773943:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	STX7->chr6:132767006-132834337:-,syntaxin_7,HERC4->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_4,chr10:69681665-69835105:-	JHOM1_OVARY	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	TUBA1B--GNAS	2	0	TUBA1B	1100	chr12:49525081:-	GNAS	23453	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	JHOM1_OVARY	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	UBL3--SLC7A1	2	0	UBL3	2173	chr13:30423649:-	SLC7A1	14036	chr13:30127997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	JHOM1_OVARY	1	1	0.0209	TRUE	1	5	0	8	1	TRUE	ACH-000237
JHOM1_OVARY	FCHSD2--SHANK2	1	3	FCHSD2	4185	chr11:72794740:-	SHANK2	30789	chr11:70937715:-	ONLY_REF_SPLICE	YES	10	5	0.29	0.44	0.0104	0.0313	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	JHOM1_OVARY	0.29	0.44	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	SLCO2B1--RAB30	1	3	SLCO2B1	16498	chr11:74907724:+	RAB30	31252	chr11:82745314:-	ONLY_REF_SPLICE	NO	274	66	0.01	0.06	0.0104	0.0313	SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1,RAB30->RAB30,_member_RAS_oncogene_family,chr11:82684175-82782965:-	JHOM1_OVARY	0.01	0.06	0.0417	FALSE	0	0	0	1	0	FALSE	ACH-000237
JHOM1_OVARY	AFF1--GNAS	1	1	AFF1	3385	chr4:87869723:+	GNAS	51002	chr20:57470667:+	ONLY_REF_SPLICE	YES	139	1027	0.01	0	0.0104	0.0104	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	JHOM1_OVARY	0	0.01	0.0208	FALSE	1	0	0	1	0	FALSE	ACH-000237
JHOM1_OVARY	AGPS--HOXD10	1	1	AGPS	15086	chr2:178364458:+	HOXD10	34933	chr2:176983682:+	ONLY_REF_SPLICE	YES	82	4	0.02	0.33	0.0104	0.0104	AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+,HOXD10->chr2:176973518-176984670:+,homeobox_D10	JHOM1_OVARY	0.02	0.33	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000237
JHOM1_OVARY	FBXW8--CRADD	1	1	FBXW8	1202	chr12:117348962:+	CRADD	21087	chr12:94072545:+	ONLY_REF_SPLICE	YES	55	0	0.04	1	0.0104	0.0104	FBXW8->F-box_and_WD_repeat_domain_containing_8,chr12:117348761-117468953:+,CRADD->CASP2_and_RIPK1_domain_containing_adaptor_with_death_domain,chr12:94071151-94288616:+	JHOM1_OVARY	0.04	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000237
JHOM1_OVARY	FBXW8--CRADD	1	1	FBXW8	1400	chr12:117349160:+	CRADD	21087	chr12:94072545:+	ONLY_REF_SPLICE	YES	76	0	0.03	1	0.0104	0.0104	FBXW8->F-box_and_WD_repeat_domain_containing_8,chr12:117348761-117468953:+,CRADD->CASP2_and_RIPK1_domain_containing_adaptor_with_death_domain,chr12:94071151-94288616:+	JHOM1_OVARY	0.03	1	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000237
JHOM1_OVARY	HSP90AA1--DYNC1H1	1	1	HSP90AA1	7819	chr14:102549371:-	DYNC1H1	44915	chr14:102486230:+	ONLY_REF_SPLICE	YES	3923	1298	0	0	0.0104	0.0104	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,{Klijn_CCL:Lung=1,Breast=1},LOCAL_INVERSION:-:+:[29946],HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1,DYNC1H1->chr14:102430865-102517129:+,dynein_cytoplasmic_1_heavy_chain_1	JHOM1_OVARY	0	0	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000237
JHOM1_OVARY	ITGB3--GPI	1	1	ITGB3	3377	chr17:45360915:+	GPI	31127	chr19:34868640:+	ONLY_REF_SPLICE	YES	795	1192	0	0	0.0104	0.0104	ITGB3->chr17:45331212-45421658:+,chr17:45331263-45421658:+,integrin_subunit_beta_3,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	JHOM1_OVARY	0	0	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000237
JHOM1_OVARY	KCNE4--ADAMTS12	1	1	KCNE4	5938	chr2:223925421:+	ADAMTS12	37435	chr5:33561284:-	ONLY_REF_SPLICE	NO	0	471	1	0	0.0104	0.0104	KCNE4->chr2:223916532-224063117:+,potassium_voltage-gated_channel_subfamily_E_regulatory_subunit_4,ADAMTS12->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_12,chr5:33523640-33892297:-	JHOM1_OVARY	0	1	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000237
JHOM1_OVARY	KIF26B--SMYD3	1	1	KIF26B	2699	chr1:245319985:+	SMYD3	55692	chr1:246093239:-	ONLY_REF_SPLICE	YES	5	149	0.29	0.01	0.0104	0.0104	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	JHOM1_OVARY	0.01	0.29	0.0208	FALSE	0	18	0	6	12	FALSE	ACH-000237
JHOM1_OVARY	NUTM2A-AS1--GLUD1	1	1	NUTM2A-AS1	2475	chr10:89096543:-	GLUD1	33340	chr10:88827914:-	ONLY_REF_SPLICE	NO	51	258	0.04	0.01	0.0104	0.0104	NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,GLUD1->chr10:88810243-88854623:-,glutamate_dehydrogenase_1	JHOM1_OVARY	0.01	0.04	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000237
JHOM1_OVARY	PRSS23--MTX2	1	1	PRSS23	8412	chr11:86534635:+	MTX2	25467	chr2:177161588:+	ONLY_REF_SPLICE	YES	56	679	0.03	0	0.0104	0.0104	PRSS23->chr11:86502101-86663952:+,protease,_serine_23,MTX2->chr2:177134123-177202753:+,metaxin_2	JHOM1_OVARY	0	0.03	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000237
JHOM1_OVARY	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	130	1	0.02	0.0104	0.0104	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHOM1_OVARY	0.02	1	0.0208	FALSE	16	356	14	466	0	FALSE	ACH-000237
JHOM1_OVARY	TPM2--ACTG1	1	1	TPM2	4592	chr9:35685061:-	ACTG1	14213	chr17:79478652:-	ONLY_REF_SPLICE	NO	891	7938	0	0	0.0104	0.0104	GTEx&tcga_normals:114/3694=3.09%,GTEx:2.09%,GTEx_FI:{Blood_Vessel=[count:158=pct:42.8],Esophagus=[count:132=pct:32.6],Colon=[count:59=pct:30.9],Heart=[count:15=pct:6.0],Prostate=[count:9=pct:14.8],Stomach=[count:8=pct:9.0],Adipose_Tissue=[count:6=pct:2.0],Uterus=[count:4=pct:9.3],Small_Intestine=[count:3=pct:5.5],Vagina=[count:3=pct:5.5],Bladder=[count:2=pct:22.2],Lung=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Breast=[count:1=pct:0.9],_not_provided_=[count:1=pct:100.0],Fallopian_Tube=[count:1=pct:16.7],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=484;pct=5.59%;dist=Artery_-_Tibial=130,Esophagus_-_Muscularis=91,Esophagus_-_Gastroesophageal_Junction=56,Colon_-_Sigmoid=48,Artery_-_Coronary=29,Artery_-_Aorta=28,Colon_-_Transverse=23,Stomach=15,Adipose_-_Subcutaneous=13,Prostate=10,Uterus=8,Esophagus_-_Mucosa=6,Small_Intestine_-_Terminal_Ileum=5,Heart_-_Left_Ventricle=5,Heart_-_Atrial_Appendage=5,Breast_-_Mammary_Tissue=2,Vagina=2,Bladder=2,Ovary=1,Lung=1,Adipose_-_Visceral_(Omentum)=1,Muscle_-_Skeletal=1,Cells_-_Transformed_fibroblasts=1,Fallopian_Tube=1},TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),ACTG1->actin_gamma_1,chr17:79476997-79490873:-	JHOM1_OVARY	0	0	0.0208	FALSE	237	57	25	9	0	FALSE	ACH-000237
HT1080_SOFT_TISSUE	TIMM23B--LINC00843	106	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.0849	0.3275	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HT1080_SOFT_TISSUE	0.99	1	1.4124	TRUE	508	994	45	981	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	AC104389.28--HBE1	81	49	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	93	5	0.58	0.96	0.829	0.5015	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HT1080_SOFT_TISSUE	0.58	0.96	1.3305	TRUE	0	48	0	65	48	FALSE	ACH-000054
HT1080_SOFT_TISSUE	TIMM23--RP11-464F9.1	66	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	421	3	0.14	0.96	0.6755	0.0102	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HT1080_SOFT_TISSUE	0.14	0.96	0.6857	TRUE	519	3926	326	965	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	MTAP--CDKN2B-AS1	56	14	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	29730	chr9:22056251:+	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.5732	0.1433	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT1080_SOFT_TISSUE	0.99	1	0.7165	FALSE	0	0	0	1	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	RP11-344E13.3--UBBP4	35	81	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	306	0	0.27	1	0.3582	0.829	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	HT1080_SOFT_TISSUE	0.27	1	1.1872	TRUE	23	13	0	54	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	AC104389.28--HBE1	35	56	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	93	0	0.49	1	0.3582	0.5732	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HT1080_SOFT_TISSUE	0.49	1	0.9314	TRUE	0	35	0	55	35	FALSE	ACH-000054
HT1080_SOFT_TISSUE	PLXDC1--TAF13	34	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.348	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HT1080_SOFT_TISSUE	1	1	0.348	TRUE	7	10	0	216	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	NPM1P24--SET	25	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	53	1188	0.33	0.02	0.2559	0.0102	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HT1080_SOFT_TISSUE	0.02	0.33	0.2661	TRUE	0	0	0	434	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	RP11-307P5.1--SASH1	18	6	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	7	1	0.77	0.1842	0.0614	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HT1080_SOFT_TISSUE	0.77	1	0.2456	TRUE	0	2	0	37	2	FALSE	ACH-000054
HT1080_SOFT_TISSUE	DHX40--VMP1	16	8	DHX40	19046	chr17:57684534:+	VMP1	39896	chr17:57917129:+	INCL_NON_REF_SPLICE	YES	53	227	0.31	0.1	0.1638	0.0819	NEIGHBORS[98847],DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HT1080_SOFT_TISSUE	0.1	0.31	0.2457	FALSE	0	0	0	1	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	NPM1P24--SET	15	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	NO	53	1459	0.23	0.01	0.1535	0.0102	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HT1080_SOFT_TISSUE	0.01	0.23	0.1637	FALSE	0	0	0	434	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	MT-ND6--MT-TE	11	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1126	0.0307	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT1080_SOFT_TISSUE	1	1	0.1433	FALSE	499	1288	110	792	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	MTAP--CDKN2B-AS1	8	13	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	29733	chr9:22056254:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0819	0.1331	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT1080_SOFT_TISSUE	0.95	1	0.215	FALSE	0	0	0	1	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	ANP32B--SEPT7	11	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1126	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	HT1080_SOFT_TISSUE	1	1	0.1126	TRUE	1	1	0	18	1	TRUE	ACH-000054
HT1080_SOFT_TISSUE	CTD-2130O13.1--RP11-157P23.2	10	0	CTD-2130O13.1	1073	chr18:44812168:+	RP11-157P23.2	14906	chr18:45084725:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1023	0	NEIGHBORS_OVERLAP:+:+:[57211],CTD-2130O13.1->chr18:44812096-45120914:+,RP11-157P23.2->chr18:45027543-45084754:+	HT1080_SOFT_TISSUE	1	1	0.1023	FALSE	0	0	0	2	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	MTAP--CDKN2B-AS1	8	7	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	32562	chr9:22061952:+	ONLY_REF_SPLICE	YES	1	3	0.94	0.83	0.0819	0.0716	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT1080_SOFT_TISSUE	0.83	0.94	0.1535	FALSE	0	0	0	2	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	C15orf57--CBX3	7	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	33	41	0.33	0.28	0.0716	0.0921	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HT1080_SOFT_TISSUE	0.28	0.33	0.1637	TRUE	267	562	48	632	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	RP11-403B2.7--RP11-403B2.6	3	21	RP11-403B2.7	1254	chr15:20961259:-	RP11-403B2.6	7754	chr15:20965236:-	ONLY_REF_SPLICE	YES	3	0	0.89	1	0.0307	0.2149	GTEx_FI:{Brain=[count:17=pct:2.6],Esophagus=[count:15=pct:3.7],Blood_Vessel=[count:8=pct:2.2],Skin=[count:7=pct:2.2],Thyroid=[count:5=pct:2.8],Prostate=[count:4=pct:6.6],Lung=[count:4=pct:2.4],Heart=[count:3=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Blood=[count:2=pct:1.1],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},LOCAL_REARRANGEMENT:-:[3128],RP11-403B2.7->chr15:20935076-20961512:-,RP11-403B2.6->chr15:20964640-20980123:-	HT1080_SOFT_TISSUE	0.89	1	0.2456	TRUE	22	66	5	11	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	C15orf57--CBX3	6	8	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	33	42	0.3	0.25	0.0614	0.0819	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HT1080_SOFT_TISSUE	0.25	0.3	0.1433	TRUE	267	562	48	632	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	NPM1P24--SET	7	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	54	1342	0.13	0.01	0.0716	0.0102	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HT1080_SOFT_TISSUE	0.01	0.13	0.0818	FALSE	0	0	0	434	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	C15orf57--CBX3	4	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	33	43	0.25	0.2	0.0409	0.0716	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HT1080_SOFT_TISSUE	0.2	0.25	0.1125	TRUE	267	562	48	632	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	NPM1P24--SET	4	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	54	1434	0.08	0	0.0409	0.0102	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HT1080_SOFT_TISSUE	0	0.08	0.0511	FALSE	0	0	0	434	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	CTD-2130O13.1--RP11-157P23.2	4	0	CTD-2130O13.1	1073	chr18:44812168:+	RP11-157P23.2	13666	chr18:45071785:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0409	0	NEIGHBORS_OVERLAP:+:+:[57211],CTD-2130O13.1->chr18:44812096-45120914:+,RP11-157P23.2->chr18:45027543-45084754:+	HT1080_SOFT_TISSUE	1	1	0.0409	FALSE	0	0	0	1	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	MTAP--CDKN2B-AS1	3	3	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	37616	chr9:22092307:+	ONLY_REF_SPLICE	YES	1	6	0.86	0.5	0.0307	0.0307	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT1080_SOFT_TISSUE	0.5	0.86	0.0614	FALSE	0	2	0	5	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	MTAP--CDKN2B-AS1	3	1	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	40771	chr9:22112319:+	ONLY_REF_SPLICE	YES	1	4	0.8	0.5	0.0307	0.0102	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT1080_SOFT_TISSUE	0.5	0.8	0.0409	FALSE	0	5	0	7	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	AC104389.28--HBE1	3	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0307	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HT1080_SOFT_TISSUE	1	1	0.0307	TRUE	0	16	0	53	13	FALSE	ACH-000054
HT1080_SOFT_TISSUE	EIF1--RPS28	3	0	EIF1	1087	chr17:39845223:+	RPS28	8126	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HT1080_SOFT_TISSUE	1	1	0.0307	TRUE	0	0	0	81	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT1080_SOFT_TISSUE	1	1	0.0307	FALSE	499	1288	110	792	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	MTAP--CDKN2B-AS1	2	4	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	36403	chr9:22077678:+	ONLY_REF_SPLICE	YES	1	7	0.86	0.46	0.0205	0.0409	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT1080_SOFT_TISSUE	0.46	0.86	0.0614	FALSE	0	1	0	2	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	IGF2BP2--TRA2B	2	3	IGF2BP2	3513	chr3:185538800:-	TRA2B	30253	chr3:185649640:-	ONLY_REF_SPLICE	YES	370	967	0.01	0.01	0.0205	0.0307	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	HT1080_SOFT_TISSUE	0.01	0.01	0.0512	FALSE	0	0	0	5	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	MTAP--CDKN2B-AS1	2	3	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	38778	chr9:22096371:+	ONLY_REF_SPLICE	YES	1	7	0.83	0.42	0.0205	0.0307	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT1080_SOFT_TISSUE	0.42	0.83	0.0512	FALSE	0	2	0	7	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	MTAP--CDKN2B-AS1	1	5	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	34711	chr9:22065661:+	ONLY_REF_SPLICE	YES	1	5	0.86	0.55	0.0102	0.0512	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT1080_SOFT_TISSUE	0.55	0.86	0.0614	FALSE	0	0	0	1	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	ANPEP--EEF1D	2	0	ANPEP	1630	chr15:90358004:-	EEF1D	30446	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HT1080_SOFT_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000054
HT1080_SOFT_TISSUE	ATR--U2SURP	2	0	ATR	3414	chr3:142284963:-	U2SURP	75627	chr3:142751626:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Vagina=1},ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	HT1080_SOFT_TISSUE	1	1	0.0205	TRUE	0	10	0	10	7	TRUE	ACH-000054
HT1080_SOFT_TISSUE	CTD-2130O13.1--RP11-157P23.2	2	0	CTD-2130O13.1	1073	chr18:44812168:+	RP11-157P23.2	12459	chr18:45038111:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	NEIGHBORS_OVERLAP:+:+:[57211],CTD-2130O13.1->chr18:44812096-45120914:+,RP11-157P23.2->chr18:45027543-45084754:+	HT1080_SOFT_TISSUE	1	1	0.0205	FALSE	0	0	0	1	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	CTD-2130O13.1--RP11-157P23.2	2	0	CTD-2130O13.1	1037	chr18:44812132:+	RP11-157P23.2	14906	chr18:45084725:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	NEIGHBORS_OVERLAP:+:+:[57211],CTD-2130O13.1->chr18:44812096-45120914:+,RP11-157P23.2->chr18:45027543-45084754:+	HT1080_SOFT_TISSUE	1	1	0.0205	FALSE	0	0	0	2	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	DOT1L--AP3D1	2	0	DOT1L	8576	chr19:2194576:+	AP3D1	62439	chr19:2102267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx_v2:{count=6;pct=0.07%;dist=Heart_-_Atrial_Appendage=2,Vagina=1,Brain_-_Hypothalamus=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Testis=1},NEIGHBORS_OVERLAP:+:-:[316],DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	HT1080_SOFT_TISSUE	1	1	0.0205	FALSE	1	0	0	3	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HT1080_SOFT_TISSUE	1	1	0.0205	TRUE	3	14	2	43	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	PVT1--FAM49B	2	0	PVT1	1202	chr8:128806980:+	FAM49B	36309	chr8:130915596:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	HT1080_SOFT_TISSUE	1	1	0.0205	TRUE	0	1	0	1	0	TRUE	ACH-000054
HT1080_SOFT_TISSUE	RHBDL2--TCP1	2	0	RHBDL2	1118	chr1:39407354:-	TCP1	23025	chr6:160201119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	RHBDL2->chr1:39351479-39407471:-,rhomboid,_veinlet-like_2_(Drosophila),TCP1->chr6:160199530-160210781:-,t-complex_1	HT1080_SOFT_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000054
HT1080_SOFT_TISSUE	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HT1080_SOFT_TISSUE	1	1	0.0205	TRUE	62	24	1	171	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	RNF144B--DEK	1	2	RNF144B	2552	chr6:18387861:+	DEK	25891	chr6:18237747:-	ONLY_REF_SPLICE	NO	25	666	0.11	0	0.0102	0.0205	GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Colon_-_Sigmoid=1},RNF144B->chr6:18368779-18469105:+,ring_finger_protein_144B,DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-	HT1080_SOFT_TISSUE	0	0.11	0.0307	FALSE	0	0	0	1	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	RP11-307P5.1--SASH1	1	2	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	NO	12	7	0.2	0.3	0.0102	0.0205	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HT1080_SOFT_TISSUE	0.2	0.3	0.0307	TRUE	0	0	0	16	0	TRUE	ACH-000054
HT1080_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0102	0.0205	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HT1080_SOFT_TISSUE	1	1	0.0307	FALSE	407	2205	196	549	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	CD44--PDHX	1	1	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	1705	101	0	0.02	0.0102	0.0102	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HT1080_SOFT_TISSUE	0	0.02	0.0204	FALSE	0	7	0	19	1	FALSE	ACH-000054
HT1080_SOFT_TISSUE	CRIM1--FEZ2	1	1	CRIM1	8239	chr2:36669878:+	FEZ2	33882	chr2:36818154:-	ONLY_REF_SPLICE	NO	877	62	0	0.03	0.0102	0.0102	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	HT1080_SOFT_TISSUE	0	0.03	0.0204	FALSE	0	1	0	3	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	MTAP--CDKN2B-AS1	1	1	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	39664	chr9:22097257:+	ONLY_REF_SPLICE	YES	1	7	0.67	0.22	0.0102	0.0102	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT1080_SOFT_TISSUE	0.22	0.67	0.0204	FALSE	0	2	0	7	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	POLE--ANKLE2	1	1	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	26	78	0.07	0.03	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	HT1080_SOFT_TISSUE	0.03	0.07	0.0204	TRUE	0	0	0	11	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	RNF144B--DEK	1	1	RNF144B	3753	chr6:18399930:+	DEK	27956	chr6:18226473:-	ONLY_REF_SPLICE	NO	9	525	0.18	0	0.0102	0.0102	GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Colon_-_Sigmoid=1},RNF144B->chr6:18368779-18469105:+,ring_finger_protein_144B,DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-	HT1080_SOFT_TISSUE	0	0.18	0.0204	FALSE	0	0	0	2	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0102	0.0102	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HT1080_SOFT_TISSUE	1	1	0.0204	FALSE	515	4851	409	746	0	FALSE	ACH-000054
HT1080_SOFT_TISSUE	SRPK2--ORC5	1	1	SRPK2	2897	chr7:105029095:-	ORC5	46391	chr7:103777340:-	ONLY_REF_SPLICE	NO	35	95	0.05	0.02	0.0102	0.0102	SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,ORC5->chr7:103766788-103848495:-,origin_recognition_complex_subunit_5	HT1080_SOFT_TISSUE	0.02	0.05	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000054
5637_URINARY_TRACT	TAOK1--CCL13	103	69	TAOK1	14861	chr17:27829741:+	CCL13	41110	chr17:32685045:+	ONLY_REF_SPLICE	YES	63	0	0.73	1	1.1408	0.7642	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,CCL13->C-C_motif_chemokine_ligand_13,chr17:32683471-32685629:+	5637_URINARY_TRACT	0.73	1	1.905	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	TIMM23B--LINC00843	71	45	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7863	0.4984	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	5637_URINARY_TRACT	1	1	1.2847	TRUE	508	994	45	981	0	FALSE	ACH-000905
5637_URINARY_TRACT	CTC-210G5.1--CTD-2354A18.1	74	18	CTC-210G5.1	2805	chr5:121812483:-	CTD-2354A18.1	16158	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	78	1	0.54	0.8196	0.1994	CTC-210G5.1->chr5:121772192-121814782:-,CTD-2354A18.1->chr18:70992176-71017113:+	5637_URINARY_TRACT	0.54	1	1.019	TRUE	0	1	0	1	1	TRUE	ACH-000905
5637_URINARY_TRACT	TIAM1--ATP5O	51	41	TIAM1	23372	chr21:32537279:-	ATP5O	47704	chr21:35276325:-	ONLY_REF_SPLICE	YES	22	1310	0.81	0.07	0.5648	0.4541	TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-,ATP5O->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_O_subunit,chr21:35275757-35288284:-	5637_URINARY_TRACT	0.07	0.81	1.0189	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	CASC15--PPARG	41	31	CASC15	10325	chr6:21909834:+	PPARG	42654	chr3:12421203:+	ONLY_REF_SPLICE	YES	45	382	0.62	0.16	0.4541	0.3433	CASC15->cancer_susceptibility_candidate_15_(non-protein_coding),chr6:21665003-22214734:+,PPARG->Oncogene{Bushman},chr3:12328867-12475855:+,peroxisome_proliferator_activated_receptor_gamma	5637_URINARY_TRACT	0.16	0.62	0.7974	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	CTC-210G5.1--CTD-2354A18.1	48	0	CTC-210G5.1	1384	chr5:121814399:-	CTD-2354A18.1	13401	chr18:70992311:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5316	0	CTC-210G5.1->chr5:121772192-121814782:-,CTD-2354A18.1->chr18:70992176-71017113:+	5637_URINARY_TRACT	1	1	0.5316	TRUE	0	1	0	1	1	TRUE	ACH-000905
5637_URINARY_TRACT	TIMM23--RP11-464F9.1	46	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	323	3	0.14	0.95	0.5095	0.0775	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	5637_URINARY_TRACT	0.14	0.95	0.587	TRUE	519	3926	326	965	0	FALSE	ACH-000905
5637_URINARY_TRACT	MT-ND6--MT-TE	45	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.4984	0.0222	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	5637_URINARY_TRACT	0.96	1	0.5206	FALSE	499	1288	110	792	0	FALSE	ACH-000905
5637_URINARY_TRACT	PSMD8--SIPA1L3	37	26	PSMD8	5186	chr19:38871639:+	SIPA1L3	36379	chr19:38673159:+	ONLY_REF_SPLICE	YES	732	198	0.08	0.24	0.4098	0.288	PSMD8->chr19:38865176-38874464:+,proteasome_26S_subunit,_non-ATPase_8,SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3	5637_URINARY_TRACT	0.08	0.24	0.6978	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	MT-ND6--MT-TE	36	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3987	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	5637_URINARY_TRACT	1	1	0.3987	FALSE	499	1288	110	792	0	FALSE	ACH-000905
5637_URINARY_TRACT	MT-TC--MT-TY	33	0	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3655	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	5637_URINARY_TRACT	1	1	0.3655	FALSE	51	280	19	36	0	FALSE	ACH-000905
5637_URINARY_TRACT	MT-TA--MT-TC	27	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.299	0.0332	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	5637_URINARY_TRACT	1	1	0.3322	FALSE	462	80	0	856	0	FALSE	ACH-000905
5637_URINARY_TRACT	CBWD2--IL1RN	22	20	CBWD2	1332	chr2:114195599:+	IL1RN	33408	chr2:113885266:+	ONLY_REF_SPLICE	YES	323	129	0.12	0.25	0.2437	0.2215	CBWD2->COBW_domain_containing_2,chr2:114195268-114253766:+,IL1RN->chr2:113864791-113891593:+,interleukin_1_receptor_antagonist	5637_URINARY_TRACT	0.12	0.25	0.4652	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	ZMYND11--SLIT3	20	12	ZMYND11	3234	chr10:226068:+	SLIT3	25722	chr5:168678463:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2215	0.1329	ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11,SLIT3->chr5:168088745-168728133:-,slit_guidance_ligand_3	5637_URINARY_TRACT	1	1	0.3544	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	MT-ND6--MT-TE	19	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2104	0.0111	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	5637_URINARY_TRACT	1	1	0.2215	FALSE	499	1288	110	792	0	FALSE	ACH-000905
5637_URINARY_TRACT	MT-TA--MT-TC	18	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1994	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	5637_URINARY_TRACT	1	1	0.1994	FALSE	462	80	0	856	0	FALSE	ACH-000905
5637_URINARY_TRACT	PLXDC1--TAF13	16	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1772	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	5637_URINARY_TRACT	1	1	0.1772	TRUE	7	10	0	216	0	FALSE	ACH-000905
5637_URINARY_TRACT	C15orf57--CBX3	12	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	85	26	0.21	0.46	0.1329	0.1108	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	5637_URINARY_TRACT	0.21	0.46	0.2437	TRUE	267	562	48	632	0	FALSE	ACH-000905
5637_URINARY_TRACT	CTC-210G5.1--CTD-2354A18.1	10	18	CTC-210G5.1	2805	chr5:121812483:-	CTD-2354A18.1	16160	chr18:70999700:+	ONLY_REF_SPLICE	YES	0	78	1	0.26	0.1108	0.1994	CTC-210G5.1->chr5:121772192-121814782:-,CTD-2354A18.1->chr18:70992176-71017113:+	5637_URINARY_TRACT	0.26	1	0.3102	TRUE	0	1	0	1	1	TRUE	ACH-000905
5637_URINARY_TRACT	ZNF654--HMGB2	14	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1551	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	5637_URINARY_TRACT	1	1	0.1551	TRUE	0	0	0	518	0	FALSE	ACH-000905
5637_URINARY_TRACT	MT-ND6--MT-TE	12	2	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.1329	0.0222	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	5637_URINARY_TRACT	0.88	1	0.1551	FALSE	499	1288	110	792	0	FALSE	ACH-000905
5637_URINARY_TRACT	PUM2--C2orf43	9	12	PUM2	19239	chr2:20462954:-	C2orf43	32966	chr2:21001225:-	ONLY_REF_SPLICE	YES	130	0	0.14	1	0.0997	0.1329	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,C2orf43->chr2:20883788-21022882:-	5637_URINARY_TRACT	0.14	1	0.2326	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1108	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	5637_URINARY_TRACT	1	1	0.1108	TRUE	0	0	0	434	0	FALSE	ACH-000905
5637_URINARY_TRACT	RP11-123O10.4--GRIP1	9	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0997	0.0443	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	5637_URINARY_TRACT	1	1	0.144	FALSE	416	2512	207	587	0	FALSE	ACH-000905
5637_URINARY_TRACT	COL6A2--SPATC1L	9	0	COL6A2	1077	chr21:47518087:+	SPATC1L	26324	chr21:47588572:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0997	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},LOCAL_INVERSION:+:-:[28299],COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,SPATC1L->chr21:47581062-47604390:-,spermatogenesis_and_centriole_associated_1-like	5637_URINARY_TRACT	1	1	0.0997	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	RPSAP52--HMGA2	7	8	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	12	221	0.56	0.06	0.0775	0.0886	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	5637_URINARY_TRACT	0.06	0.56	0.1661	FALSE	0	59	0	125	0	FALSE	ACH-000905
5637_URINARY_TRACT	BBX--TRAT1	7	5	BBX	33455	chr3:107510146:+	TRAT1	47033	chr3:108549517:+	ONLY_REF_SPLICE	YES	51	0	0.19	1	0.0775	0.0554	BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,TRAT1->T_cell_receptor_associated_transmembrane_adaptor_1,chr3:108541545-108573852:+	5637_URINARY_TRACT	0.19	1	0.1329	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	CTC-210G5.1--CTD-2354A18.1	3	19	CTC-210G5.1	2805	chr5:121812483:-	CTD-2354A18.1	16139	chr18:70999679:+	INCL_NON_REF_SPLICE	YES	0	96	1	0.19	0.0332	0.2104	CTC-210G5.1->chr5:121772192-121814782:-,CTD-2354A18.1->chr18:70992176-71017113:+	5637_URINARY_TRACT	0.19	1	0.2436	TRUE	0	1	0	1	1	TRUE	ACH-000905
5637_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	6	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0665	0.0775	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	5637_URINARY_TRACT	0.93	1	0.144	FALSE	515	4851	409	746	0	FALSE	ACH-000905
5637_URINARY_TRACT	MT-TC--MT-TY	7	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0775	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	5637_URINARY_TRACT	1	1	0.0775	FALSE	51	280	19	36	0	FALSE	ACH-000905
5637_URINARY_TRACT	CBWD2--IL1RN	1	20	CBWD2	2427	chr2:114196694:+	IL1RN	33408	chr2:113885266:+	ONLY_REF_SPLICE	YES	389	129	0.05	0.14	0.0111	0.2215	CBWD2->COBW_domain_containing_2,chr2:114195268-114253766:+,IL1RN->chr2:113864791-113891593:+,interleukin_1_receptor_antagonist	5637_URINARY_TRACT	0.05	0.14	0.2326	TRUE	0	0	0	1	0	FALSE	ACH-000905
5637_URINARY_TRACT	RP11-114H23.1--RP11-114H23.2	5	4	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0554	0.0443	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	5637_URINARY_TRACT	1	1	0.0997	FALSE	81	155	12	160	0	FALSE	ACH-000905
5637_URINARY_TRACT	SPG11--MRPL52	6	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	5637_URINARY_TRACT	1	1	0.0665	TRUE	38	11	0	19	0	FALSE	ACH-000905
5637_URINARY_TRACT	PUM2--C2orf43	4	3	PUM2	17971	chr2:20478344:-	C2orf43	32966	chr2:21001225:-	ONLY_REF_SPLICE	YES	115	0	0.06	1	0.0443	0.0332	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,C2orf43->chr2:20883788-21022882:-	5637_URINARY_TRACT	0.06	1	0.0775	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	RP11-444D3.1--SOX5	3	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0.0775	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	5637_URINARY_TRACT	1	1	0.1107	TRUE	477	1352	189	275	0	FALSE	ACH-000905
5637_URINARY_TRACT	SRGAP3--WNT7A	3	7	SRGAP3	10488	chr3:9146364:-	WNT7A	55897	chr3:13916670:-	ONLY_REF_SPLICE	YES	7	357	0.59	0.03	0.0332	0.0775	SRGAP3->Oncogene{Bushman},SLIT-ROBO_Rho_GTPase_activating_protein_3,chr3:9022275-9404737:-,WNT7A->Wnt_family_member_7A,chr3:13857755-13921618:-	5637_URINARY_TRACT	0.03	0.59	0.1107	TRUE	0	0	0	1	0	FALSE	ACH-000905
5637_URINARY_TRACT	MT-ND6--MT-TE	4	2	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0443	0.0222	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	5637_URINARY_TRACT	0.75	1	0.0665	FALSE	499	1288	110	792	0	FALSE	ACH-000905
5637_URINARY_TRACT	MT-ND6--MT-TE	4	2	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0443	0.0222	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	5637_URINARY_TRACT	0.75	1	0.0665	FALSE	499	1288	110	792	0	FALSE	ACH-000905
5637_URINARY_TRACT	MT-ND6--MT-TE	4	2	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0443	0.0222	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	5637_URINARY_TRACT	0.75	1	0.0665	FALSE	499	1288	110	792	0	FALSE	ACH-000905
5637_URINARY_TRACT	MT-ND6--MT-TE	4	2	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.67	1	0.0443	0.0222	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	5637_URINARY_TRACT	0.67	1	0.0665	FALSE	499	1288	110	792	0	FALSE	ACH-000905
5637_URINARY_TRACT	CTC-210G5.1--CTD-2354A18.1	4	0	CTC-210G5.1	1287	chr5:121814496:-	CTD-2354A18.1	13304	chr18:70992214:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	CTC-210G5.1->chr5:121772192-121814782:-,CTD-2354A18.1->chr18:70992176-71017113:+	5637_URINARY_TRACT	1	1	0.0443	TRUE	0	1	0	1	1	TRUE	ACH-000905
5637_URINARY_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	5637_URINARY_TRACT	1	1	0.0443	FALSE	499	1288	110	792	0	FALSE	ACH-000905
5637_URINARY_TRACT	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	5637_URINARY_TRACT	1	1	0.0443	TRUE	465	1949	224	605	0	FALSE	ACH-000905
5637_URINARY_TRACT	MT-TA--MT-TC	3	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0.0332	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	5637_URINARY_TRACT	1	1	0.0664	FALSE	462	80	0	856	0	FALSE	ACH-000905
5637_URINARY_TRACT	RP11-123O10.4--GRIP1	3	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0.0332	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	5637_URINARY_TRACT	1	1	0.0664	FALSE	93	270	15	244	0	FALSE	ACH-000905
5637_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	2	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0222	0.0775	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	5637_URINARY_TRACT	0.9	1	0.0997	FALSE	407	2205	196	549	0	FALSE	ACH-000905
5637_URINARY_TRACT	MT-ND6--MT-TE	3	2	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.0332	0.0222	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	5637_URINARY_TRACT	0.71	1	0.0554	FALSE	499	1288	110	792	0	FALSE	ACH-000905
5637_URINARY_TRACT	MT-ND6--MT-TE	3	1	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0.0111	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	5637_URINARY_TRACT	1	1	0.0443	FALSE	499	1288	110	792	0	FALSE	ACH-000905
5637_URINARY_TRACT	SLIT3--ZMYND11	3	1	SLIT3	1617	chr5:168727517:-	ZMYND11	58052	chr10:255829:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0.0111	SLIT3->chr5:168088745-168728133:-,slit_guidance_ligand_3,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	5637_URINARY_TRACT	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1031	chrM:14643:-	MT-TE	4590	chrM:14678:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	5637_URINARY_TRACT	1	1	0.0332	FALSE	499	1288	110	792	0	FALSE	ACH-000905
5637_URINARY_TRACT	MT-TA--MT-TC	3	0	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	5637_URINARY_TRACT	1	1	0.0332	FALSE	462	80	0	856	0	FALSE	ACH-000905
5637_URINARY_TRACT	RP1-298M8.1--ZNF718	3	0	RP1-298M8.1	1211	chr20:17168989:+	ZNF718	7806	chr4:154702:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	NUCLCLUST,RP1-298M8.1->chr20:17168779-17168989:+,ZNF718->chr4:124386-157779:+,zinc_finger_protein_718	5637_URINARY_TRACT	1	1	0.0332	TRUE	1	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	RP11-444D3.1--SOX5	1	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0111	0.0775	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	5637_URINARY_TRACT	1	1	0.0886	TRUE	160	277	29	98	0	FALSE	ACH-000905
5637_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0111	0.0775	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	5637_URINARY_TRACT	0.89	1	0.0886	FALSE	467	2173	244	435	0	FALSE	ACH-000905
5637_URINARY_TRACT	ABCA5--ZNF395	2	0	ABCA5	1193	chr17:67323193:-	ZNF395	53245	chr8:28232899:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-,ZNF395->chr8:28203102-28260218:-,zinc_finger_protein_395	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	ADAP1--GET4	2	0	ADAP1	9672	chr7:959605:-	GET4	25015	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=5;pct=0.06%;dist=Small_Intestine_-_Terminal_Ileum=1,Nerve_-_Tibial=1,Whole_Blood=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[1467],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	5637_URINARY_TRACT	1	1	0.0222	TRUE	1	1	0	4	0	TRUE	ACH-000905
5637_URINARY_TRACT	ANO7--ATG4B	2	0	ANO7	20467	chr2:242157796:+	ATG4B	28821	chr2:242590425:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	ANO7->anoctamin_7,chr2:242127924-242164792:+,ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	ARHGAP18--NMRAL1	2	0	ARHGAP18	1202	chr6:130031169:-	NMRAL1	31600	chr16:4519466:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	ARHGAP18->Rho_GTPase_activating_protein_18,chr6:129897277-130031370:-,NMRAL1->NmrA-like_family_domain_containing_1,chr16:4511681-4545764:-	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	ATL3--STIP1	2	0	ATL3	1632	chr11:63438762:-	STIP1	24534	chr11:63960550:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx&tcga_normals:1/3694=0.03%,ATL3->atlastin_GTPase_3,chr11:63391559-63439393:-,STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	BCL9L--MYBL2	2	0	BCL9L	2450	chr11:118789535:-	MYBL2	21772	chr20:42302446:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	BCL9L->B-cell_CLL/lymphoma_9-like,chr11:118764584-118796317:-,MYBL2->MYB_proto-oncogene_like_2,Oncogene{Bushman},chr20:42295754-42345136:+	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	CHST15--CASP7	2	0	CHST15	1222	chr10:125852985:-	CASP7	23499	chr10:115480791:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	CHST15->carbohydrate_(N-acetylgalactosamine_4-sulfate_6-O)_sulfotransferase_15,chr10:125767184-125853206:-,CASP7->caspase_7,chr10:115438942-115490662:+	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	COG3--PICALM	2	0	COG3	13315	chr13:46067621:+	PICALM	47041	chr11:85695016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	COG3->chr13:46039060-46110765:+,component_of_oligomeric_golgi_complex_3,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	DAPP1--RAP1GDS1	2	0	DAPP1	3439	chr4:100761579:+	RAP1GDS1	17452	chr4:99214556:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	DAPP1->chr4:100737990-100791311:+,dual_adaptor_of_phosphotyrosine_and_3-phosphoinositides,RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	DGKH--VWA8	2	0	DGKH	24125	chr13:42772731:+	VWA8	84136	chr13:42277547:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[78920],DGKH->chr13:42614176-42830714:+,diacylglycerol_kinase_eta,VWA8->chr13:42140973-42535256:-,von_Willebrand_factor_A_domain_containing_8	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	DOCK2--NPM1	2	0	DOCK2	28183	chr5:169230210:+	NPM1	70012	chr5:170818309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	DOCK2->chr5:169064251-169510386:+,dedicator_of_cytokinesis_2,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	EYA3--HMGB1	2	0	EYA3	1173	chr1:28415035:-	HMGB1	34120	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	JARID2--DSP	2	0	JARID2	2342	chr6:15249195:+	DSP	29620	chr6:7555951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,DSP->chr6:7541808-7586950:+,desmoplakin	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	LY6K--FAM120A	2	0	LY6K	2603	chr8:143783131:+	FAM120A	28721	chr9:96323391:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	LY6K->chr8:143781529-143786545:+,lymphocyte_antigen_6_complex,_locus_K,FAM120A->chr9:96214004-96328397:+,family_with_sequence_similarity_120A	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	5637_URINARY_TRACT	1	1	0.0222	TRUE	145	312	16	51	0	FALSE	ACH-000905
5637_URINARY_TRACT	NDST1--TCOF1	2	0	NDST1	7661	chr5:149901329:+	TCOF1	47040	chr5:149767506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	LOCAL_REARRANGEMENT:+:[85510],NDST1->N-deacetylase/N-sulfotransferase_1,chr5:149865381-149937773:+,TCOF1->chr5:149737202-149779871:+,treacle_ribosome_biogenesis_factor_1	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	PAQR3--PARD3	2	0	PAQR3	1399	chr4:79860194:-	PARD3	52709	chr10:34573173:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	PAQR3->chr4:79808281-79860592:-,progestin_and_adipoQ_receptor_family_member_3,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	PCNP--MAP3K8	2	0	PCNP	1185	chr3:101293123:+	MAP3K8	16367	chr10:30736711:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	PCNP->PEST_proteolytic_signal_containing_nuclear_protein,chr3:101292939-101313281:+,MAP3K8->Oncogene{Bushman},chr10:30722866-30750762:+,mitogen-activated_protein_kinase_kinase_kinase_8	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	PROSC--TUG1	2	0	PROSC	2996	chr8:37623873:+	TUG1	14643	chr22:31368910:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),TUG1->chr22:31366663-31375381:+,taurine_up-regulated_1_(non-protein_coding)	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	RBM25--ACTN1	2	0	RBM25	1270	chr14:73525413:+	ACTN1	35012	chr14:69392389:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+,ACTN1->actinin_alpha_1,chr14:69340860-69446157:-	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	RBM26--MYCBP2	2	0	RBM26	1774	chr13:79979839:-	MYCBP2	94762	chr13:77673148:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},RBM26->RNA_binding_motif_protein_26,chr13:79885962-79980612:-,MYCBP2->MYC_binding_protein_2,_E3_ubiquitin_protein_ligase,chr13:77618792-77901185:-	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	RP6-99M1.2--FOXN3	2	0	RP6-99M1.2	1489	chrX:45629189:-	FOXN3	15663	chr14:89817152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	RP6-99M1.2->chrX:45604639-45629677:-,FOXN3->chr14:89591215-90085493:-,forkhead_box_N3	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	RP6-99M1.2--NFYB	2	0	RP6-99M1.2	1489	chrX:45629189:-	NFYB	9700	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	RP6-99M1.2->chrX:45604639-45629677:-,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	TMF1--UBA3	2	0	TMF1	1389	chr3:69101096:-	UBA3	31392	chr3:69112654:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	LOCAL_REARRANGEMENT:-:[2397],TMF1->TATA_element_modulatory_factor_1,chr3:69068978-69101484:-,UBA3->chr3:69103881-69129559:-,ubiquitin_like_modifier_activating_enzyme_3	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	USP53--RP11-111G23.1	2	0	USP53	13898	chr4:120177678:+	RP11-111G23.1	43692	chr9:40337309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	USP53->chr4:120133742-120216672:+,ubiquitin_specific_peptidase_53,RP11-111G23.1->chr9:40293025-40339528:+	5637_URINARY_TRACT	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000905
5637_URINARY_TRACT	AFAP1--ABLIM2	1	2	AFAP1	1271	chr4:7941383:-	ABLIM2	59719	chr4:7986620:-	ONLY_REF_SPLICE	YES	70	1	0.04	0.75	0.0111	0.0222	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	5637_URINARY_TRACT	0.04	0.75	0.0333	TRUE	0	1	0	2	1	TRUE	ACH-000905
5637_URINARY_TRACT	MYH9--EIF3D	1	2	MYH9	5055	chr22:36737415:-	EIF3D	47062	chr22:36922178:-	ONLY_REF_SPLICE	YES	1841	95	0	0.03	0.0111	0.0222	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D	5637_URINARY_TRACT	0	0.03	0.0333	FALSE	0	0	0	1	0	FALSE	ACH-000905
5637_URINARY_TRACT	PUM2--C2orf43	1	2	PUM2	17971	chr2:20478344:-	C2orf43	36650	chr2:20974739:-	ONLY_REF_SPLICE	YES	115	84	0.03	0.03	0.0111	0.0222	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,C2orf43->chr2:20883788-21022882:-	5637_URINARY_TRACT	0.03	0.03	0.0333	TRUE	0	0	0	1	0	FALSE	ACH-000905
5637_URINARY_TRACT	AFAP1--ABLIM2	1	1	AFAP1	1271	chr4:7941383:-	ABLIM2	60984	chr4:7985071:-	ONLY_REF_SPLICE	YES	70	1	0.03	0.67	0.0111	0.0111	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	5637_URINARY_TRACT	0.03	0.67	0.0222	TRUE	0	1	0	3	1	FALSE	ACH-000905
5637_URINARY_TRACT	BNIP3L--HP1BP3	1	1	BNIP3L	6520	chr8:26265892:+	HP1BP3	21625	chr1:21100103:-	ONLY_REF_SPLICE	YES	284	444	0.01	0	0.0111	0.0111	BNIP3L->BCL2/adenovirus_E1B_19kDa_interacting_protein_3-like,chr8:26240414-26363152:+,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	5637_URINARY_TRACT	0	0.01	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000905
5637_URINARY_TRACT	CDH13--HSD17B2	1	1	CDH13	9210	chr16:82892078:+	HSD17B2	39047	chr16:82101775:+	ONLY_REF_SPLICE	NO	208	30	0.01	0.06	0.0111	0.0111	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,HSD17B2->chr16:82068609-82132139:+,hydroxysteroid_(17-beta)_dehydrogenase_2	5637_URINARY_TRACT	0.01	0.06	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000905
5637_URINARY_TRACT	EED--PICALM	1	1	EED	1800	chr11:85956385:+	PICALM	22249	chr11:85742653:-	ONLY_REF_SPLICE	NO	141	595	0.01	0	0.0111	0.0111	EED->chr11:85955586-85989855:+,embryonic_ectoderm_development,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	5637_URINARY_TRACT	0	0.01	0.0222	FALSE	0	0	0	3	0	FALSE	ACH-000905
5637_URINARY_TRACT	FTO--SIAH1	1	1	FTO	15028	chr16:53968021:+	SIAH1	44334	chr16:48396341:-	ONLY_REF_SPLICE	YES	43	13	0.04	0.13	0.0111	0.0111	FTO->chr16:53737875-54155853:+,fat_mass_and_obesity_associated,SIAH1->chr16:48390275-48482313:-,siah_E3_ubiquitin_protein_ligase_1	5637_URINARY_TRACT	0.04	0.13	0.0222	TRUE	0	0	0	1	0	FALSE	ACH-000905
5637_URINARY_TRACT	GDI2--RBM17	1	1	GDI2	3440	chr10:5855177:-	RBM17	20592	chr10:6139011:+	ONLY_REF_SPLICE	YES	559	33	0	0.06	0.0111	0.0111	GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-,RBM17->RNA_binding_motif_protein_17,chr10:6130950-6159420:+	5637_URINARY_TRACT	0	0.06	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000905
5637_URINARY_TRACT	NR2F2--GNAS	1	1	NR2F2	1415	chr15:96869581:+	GNAS	29055	chr20:57470667:+	ONLY_REF_SPLICE	NO	91	1309	0.02	0	0.0111	0.0111	NR2F2->chr15:96869167-96883492:+,nuclear_receptor_subfamily_2_group_F_member_2,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	5637_URINARY_TRACT	0	0.02	0.0222	FALSE	0	1	0	3	0	FALSE	ACH-000905
5637_URINARY_TRACT	PPWD1--ERBB2IP	1	1	PPWD1	1271	chr5:64859333:+	ERBB2IP	46152	chr5:65372144:+	ONLY_REF_SPLICE	YES	73	107	0.03	0.02	0.0111	0.0111	PPWD1->chr5:64859063-64883376:+,peptidylprolyl_isomerase_domain_and_WD_repeat_containing_1,ERBB2IP->chr5:65222303-65378377:+	5637_URINARY_TRACT	0.02	0.03	0.0222	TRUE	0	0	0	1	0	FALSE	ACH-000905
5637_URINARY_TRACT	TYMS--RPL23	1	1	TYMS	4286	chr18:662320:+	RPL23	14302	chr17:37008985:-	ONLY_REF_SPLICE	YES	474	2138	0	0	0.0111	0.0111	TYMS->chr18:657604-673578:+,thymidylate_synthetase,RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23	5637_URINARY_TRACT	0	0	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000905
5637_URINARY_TRACT	UBQLN1--FRMD3	1	1	UBQLN1	1704	chr9:86322415:-	FRMD3	22106	chr9:85987870:-	ONLY_REF_SPLICE	YES	213	40	0.01	0.05	0.0111	0.0111	UBQLN1->chr9:86274878-86323118:-,ubiquilin_1,FRMD3->FERM_domain_containing_3,chr9:85857905-86153461:-	5637_URINARY_TRACT	0.01	0.05	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000905
5637_URINARY_TRACT	UQCC1--DCUN1D1	1	1	UQCC1	12228	chr20:33934967:-	DCUN1D1	28207	chr3:182683541:-	ONLY_REF_SPLICE	YES	89	3	0.02	0.4	0.0111	0.0111	UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,DCUN1D1->chr3:182655862-182703741:-,defective_in_cullin_neddylation_1_domain_containing_1	5637_URINARY_TRACT	0.02	0.4	0.0222	TRUE	0	0	0	1	0	FALSE	ACH-000905
5637_URINARY_TRACT	WWOX--RP11-319G9.5	1	1	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	NO	10	0	0.17	1	0.0111	0.0111	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	5637_URINARY_TRACT	0.17	1	0.0222	FALSE	33	33	2	19	0	FALSE	ACH-000905
HELA_CERVIX	HNRNPUL2--C11orf49	344	96	HNRNPUL2	1731	chr11:62494091:-	C11orf49	17844	chr11:47008759:+	ONLY_REF_SPLICE	YES	301	35	0.59	0.93	3.8361	1.0705	{Klijn_CCL:Cervix=1},HNRNPUL2->chr11:62480102-62494821:-,heterogeneous_nuclear_ribonucleoprotein_U-like_2,C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49	HELA_CERVIX	0.59	0.93	4.9066	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	B3GAT3--GANAB	234	148	B3GAT3	2679	chr11:62387969:-	GANAB	18845	chr11:62394825:-	ONLY_REF_SPLICE	YES	93	1554	0.8	0.2	2.6094	1.6504	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[2651],B3GAT3->beta-1,3-glucuronyltransferase_3,chr11:62382768-62389647:-,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	HELA_CERVIX	0.2	0.8	4.2598	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	HNRNPUL2--C11orf49	109	45	HNRNPUL2	1731	chr11:62494091:-	C11orf49	27547	chr11:47159196:+	ONLY_REF_SPLICE	YES	301	226	0.34	0.41	1.2155	0.5018	{Klijn_CCL:Cervix=1},HNRNPUL2->chr11:62480102-62494821:-,heterogeneous_nuclear_ribonucleoprotein_U-like_2,C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49	HELA_CERVIX	0.34	0.41	1.7173	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	TIMM23B--LINC00843	52	35	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.5799	0.3903	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HELA_CERVIX	0.98	1	0.9702	TRUE	508	994	45	981	0	FALSE	ACH-001086
HELA_CERVIX	AP003900.6--AC008132.1	58	7	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	2	0	0.97	1	0.6468	0.0781	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HELA_CERVIX	0.97	1	0.7249	TRUE	0	0	0	25	0	FALSE	ACH-001086
HELA_CERVIX	KANSL1--ARL17B	43	31	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	43	146	0.63	0.34	0.4795	0.3457	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HELA_CERVIX	0.34	0.63	0.8252	TRUE	181	1564	124	196	0	FALSE	ACH-001086
HELA_CERVIX	HNRNPUL2--C11orf49	24	67	HNRNPUL2	1731	chr11:62494091:-	C11orf49	23228	chr11:47073939:+	ONLY_REF_SPLICE	YES	301	157	0.23	0.37	0.2676	0.7471	{Klijn_CCL:Cervix=1},HNRNPUL2->chr11:62480102-62494821:-,heterogeneous_nuclear_ribonucleoprotein_U-like_2,C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49	HELA_CERVIX	0.23	0.37	1.0147	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	C15orf57--CBX3	26	43	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	129	52	0.35	0.57	0.2899	0.4795	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HELA_CERVIX	0.35	0.57	0.7694	TRUE	267	562	48	632	0	FALSE	ACH-001086
HELA_CERVIX	SREBF2--MEI1	29	15	SREBF2	1254	chr22:42229362:+	MEI1	47488	chr22:42154369:+	ONLY_REF_SPLICE	YES	114	7	0.28	0.86	0.3234	0.1673	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	HELA_CERVIX	0.28	0.86	0.4907	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	TIMM23--RP11-464F9.1	31	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	458	4	0.07	0.9	0.3457	0.0446	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HELA_CERVIX	0.07	0.9	0.3903	TRUE	519	3926	326	965	0	FALSE	ACH-001086
HELA_CERVIX	C15orf57--CBX3	21	40	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	121	53	0.34	0.54	0.2342	0.4461	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HELA_CERVIX	0.34	0.54	0.6803	TRUE	267	562	48	632	0	FALSE	ACH-001086
HELA_CERVIX	B3GAT3--GANAB	2	106	B3GAT3	2679	chr11:62387969:-	GANAB	19074	chr11:62394596:-	ONLY_REF_SPLICE	YES	93	1366	0.54	0.07	0.0223	1.182	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[2651],B3GAT3->beta-1,3-glucuronyltransferase_3,chr11:62382768-62389647:-,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	HELA_CERVIX	0.07	0.54	1.2043	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	ZNF654--HMGB2	28	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3122	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HELA_CERVIX	1	1	0.3122	TRUE	0	0	0	518	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ND4L	4	94	MT-ND4	1545	chrM:11304:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2880	0	0.03	1	0.0446	1.0482	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HELA_CERVIX	0.03	1	1.0928	FALSE	344	827	44	306	0	FALSE	ACH-001086
HELA_CERVIX	HNRNPUL2--C11orf49	2	96	HNRNPUL2	1731	chr11:62494091:-	C11orf49	16705	chr11:46969577:+	ONLY_REF_SPLICE	YES	301	33	0.25	0.75	0.0223	1.0705	{Klijn_CCL:Cervix=1},HNRNPUL2->chr11:62480102-62494821:-,heterogeneous_nuclear_ribonucleoprotein_U-like_2,C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49	HELA_CERVIX	0.25	0.75	1.0928	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ND4L	3	88	MT-ND4	1542	chrM:11301:+	MT-ND4L	5538	chrM:10629:+	INCL_NON_REF_SPLICE	YES	2864	2	0.03	0.98	0.0335	0.9813	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HELA_CERVIX	0.03	0.98	1.0148	FALSE	344	827	44	306	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ND4L	4	81	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	139	0	0.38	1	0.0446	0.9033	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HELA_CERVIX	0.38	1	0.9479	FALSE	344	827	44	306	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ND4L	3	81	MT-ND4	1294	chrM:11053:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	305	0	0.22	1	0.0335	0.9033	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HELA_CERVIX	0.22	1	0.9368	FALSE	344	827	44	306	0	FALSE	ACH-001086
HELA_CERVIX	CCAT1--CASC8	19	15	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	55	7	0.38	0.83	0.2119	0.1673	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HELA_CERVIX	0.38	0.83	0.3792	TRUE	0	26	0	18	24	TRUE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ND4L	3	78	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	61	0	0.57	1	0.0335	0.8698	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HELA_CERVIX	0.57	1	0.9033	FALSE	344	826	44	306	0	FALSE	ACH-001086
HELA_CERVIX	NPM1P24--SET	21	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2342	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HELA_CERVIX	1	1	0.2342	TRUE	0	0	0	434	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND5--MT-ATP8	19	5	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4119	8	0.01	0.75	0.2119	0.0558	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0.01	0.75	0.2677	FALSE	43	37	8	105	0	FALSE	ACH-001086
HELA_CERVIX	RPS6--B2M	19	1	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	9835	0	0	1	0.2119	0.0112	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	HELA_CERVIX	0	1	0.2231	TRUE	0	0	0	28	0	FALSE	ACH-001086
HELA_CERVIX	MT-CO2--MT-CO1	18	1	MT-CO2	1249	chrM:7834:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12	25656	0.61	0	0.2007	0.0112	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HELA_CERVIX	0	0.61	0.2119	FALSE	36	10	0	27	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ND4L	3	54	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	13	2	0.81	0.97	0.0335	0.6022	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HELA_CERVIX	0.81	0.97	0.6357	FALSE	344	821	44	306	0	FALSE	ACH-001086
HELA_CERVIX	SLC7A5--MT-ND4L	13	14	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	3281	0	0.01	1	0.145	0.1561	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HELA_CERVIX	0.01	1	0.3011	FALSE	0	0	0	23	0	FALSE	ACH-001086
HELA_CERVIX	CHSY3--HSPA8P4	13	6	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	26	0	0.42	1	0.145	0.0669	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	HELA_CERVIX	0.42	1	0.2119	FALSE	89	26	1	44	0	FALSE	ACH-001086
HELA_CERVIX	C15orf57--CBX3	3	41	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	121	52	0.27	0.46	0.0335	0.4572	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HELA_CERVIX	0.27	0.46	0.4907	TRUE	267	562	48	632	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND5--MT-ATP8	12	5	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6414	84	0	0.17	0.1338	0.0558	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	0.17	0.1896	FALSE	43	37	8	105	0	FALSE	ACH-001086
HELA_CERVIX	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.145	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HELA_CERVIX	1	1	0.145	TRUE	0	0	0	434	0	FALSE	ACH-001086
HELA_CERVIX	MT-ATP6--MT-CO1	12	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	10916	25216	0	0	0.1338	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HELA_CERVIX	0	0	0.145	FALSE	183	104	9	328	0	FALSE	ACH-001086
HELA_CERVIX	HSPBP1--GRK5	12	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1338	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HELA_CERVIX	1	1	0.1338	TRUE	1	39	0	134	39	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	12	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1338	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	1	1	0.1338	FALSE	230	193	14	283	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ND4L	9	9	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	13833	0	0	1	0.1004	0.1004	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HELA_CERVIX	0	1	0.2008	FALSE	344	827	44	306	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-RNR2	10	4	MT-ND4	1209	chrM:10968:+	MT-RNR2	5415	chrM:1707:+	INCL_NON_REF_SPLICE	YES	15654	0	0	1	0.1115	0.0446	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0	1	0.1561	FALSE	13	19	3	21	0	FALSE	ACH-001086
HELA_CERVIX	SREBF2--MEI1	7	16	SREBF2	1254	chr22:42229362:+	MEI1	45032	chr22:42148595:+	ONLY_REF_SPLICE	YES	114	2	0.17	0.92	0.0781	0.1784	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	HELA_CERVIX	0.17	0.92	0.2565	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	MT-ND5--MT-ATP8	9	5	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	5	560	0.74	0.02	0.1004	0.0558	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0.02	0.74	0.1562	FALSE	43	37	8	105	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND6--MT-TE	9	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1004	0.0558	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HELA_CERVIX	0.93	1	0.1562	FALSE	499	1288	110	792	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-RNR2	9	4	MT-ND4	1201	chrM:10960:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	15327	0	0	1	0.1004	0.0446	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0	1	0.145	FALSE	13	19	3	21	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	8	7	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	23361	0	0	1	0.0892	0.0781	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	1	0.1673	FALSE	231	217	16	283	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND6--MT-TE	9	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1004	0.0223	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HELA_CERVIX	1	1	0.1227	FALSE	499	1288	110	792	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND1--MT-RNR2	5	17	MT-ND1	1482	chrM:3788:+	MT-RNR2	4976	chrM:1690:+	INCL_NON_REF_SPLICE	YES	299	0	0.07	1	0.0558	0.1896	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0.07	1	0.2454	FALSE	114	26	4	85	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND1--MT-RNR2	8	5	MT-ND1	1272	chrM:3578:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	YES	79	0	0.14	1	0.0892	0.0558	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0.14	1	0.145	FALSE	114	26	4	85	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	3	25	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	6219	0	0	1	0.0335	0.2788	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	1	0.3123	FALSE	222	212	16	282	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	6	11	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21850	84	0	0.17	0.0669	0.1227	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	0.17	0.1896	FALSE	231	217	16	283	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	5	14	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	22692	0	0	1	0.0558	0.1561	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	1	0.2119	FALSE	231	217	16	283	0	FALSE	ACH-001086
HELA_CERVIX	FTH1--ACTG1	7	5	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	4439	0	0	1	0.0781	0.0558	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HELA_CERVIX	0	1	0.1339	TRUE	0	0	0	64	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-RNR2	5	13	MT-ND4	1843	chrM:11602:+	MT-RNR2	5709	chrM:2001:+	INCL_NON_REF_SPLICE	YES	22203	13656	0	0	0.0558	0.145	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0	0	0.2008	FALSE	13	19	3	21	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	8	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0892	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	1	1	0.0892	FALSE	230	193	14	283	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	4	16	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	18420	238	0	0.08	0.0446	0.1784	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	0.08	0.223	FALSE	231	217	16	283	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-RNR2	7	3	MT-ND4	1253	chrM:11012:+	MT-RNR2	5441	chrM:1733:+	INCL_NON_REF_SPLICE	YES	16843	0	0	1	0.0781	0.0335	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0	1	0.1116	FALSE	13	19	3	21	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	3	18	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1	8	0.95	0.72	0.0335	0.2007	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0.72	0.95	0.2342	FALSE	209	205	15	279	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	3	18	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	20731	0	0	1	0.0335	0.2007	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	1	0.2342	FALSE	231	217	16	283	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	6	6	MT-ND4	1512	chrM:11271:+	MT-ATP8	5453	chrM:8440:+	INCL_NON_REF_SPLICE	YES	25319	0	0	1	0.0669	0.0669	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	1	0.1338	FALSE	231	217	16	283	0	FALSE	ACH-001086
HELA_CERVIX	AP003900.6--AC008132.1	5	9	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0558	0.1004	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HELA_CERVIX	1	1	0.1562	TRUE	1	1	0	28	1	FALSE	ACH-001086
HELA_CERVIX	HNRNPUL2--C11orf49	1	25	HNRNPUL2	1731	chr11:62494091:-	C11orf49	29721	chr11:47176727:+	ONLY_REF_SPLICE	YES	301	241	0.08	0.1	0.0112	0.2788	{Klijn_CCL:Cervix=1},HNRNPUL2->chr11:62480102-62494821:-,heterogeneous_nuclear_ribonucleoprotein_U-like_2,C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49	HELA_CERVIX	0.08	0.1	0.29	TRUE	0	0	0	1	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND1--MT-RNR2	3	17	MT-ND1	1485	chrM:3791:+	MT-RNR2	4979	chrM:1693:+	INCL_NON_REF_SPLICE	YES	312	0	0.06	1	0.0335	0.1896	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0.06	1	0.2231	FALSE	114	26	4	85	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	6	5	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	23748	0	0	1	0.0669	0.0558	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	1	0.1227	FALSE	231	217	16	283	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	5	8	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	22564	1616	0	0.01	0.0558	0.0892	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	0.01	0.145	FALSE	231	217	16	283	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-RNR2	4	11	MT-ND4	1735	chrM:11494:+	MT-RNR2	5391	chrM:1683:+	INCL_NON_REF_SPLICE	YES	22148	0	0	1	0.0446	0.1227	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0	1	0.1673	FALSE	13	19	3	21	0	FALSE	ACH-001086
HELA_CERVIX	SREBF2--MEI1	3	15	SREBF2	1254	chr22:42229362:+	MEI1	46390	chr22:42149953:+	ONLY_REF_SPLICE	YES	114	8	0.14	0.69	0.0335	0.1673	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	HELA_CERVIX	0.14	0.69	0.2008	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	AP003900.6--AC008132.1	5	5	AP003900.6	1122	chr21:11169841:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0558	0.0558	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HELA_CERVIX	0.83	1	0.1116	TRUE	0	0	0	25	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND1--MT-RNR2	5	5	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	75	0	0.12	1	0.0558	0.0558	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0.12	1	0.1116	FALSE	114	26	4	85	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND1--MT-RNR2	5	5	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	71	0	0.12	1	0.0558	0.0558	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0.12	1	0.1116	FALSE	114	26	4	85	0	FALSE	ACH-001086
HELA_CERVIX	SREBF2--MEI1	2	17	SREBF2	1254	chr22:42229362:+	MEI1	42647	chr22:42141889:+	ONLY_REF_SPLICE	YES	114	0	0.14	1	0.0223	0.1896	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	HELA_CERVIX	0.14	1	0.2119	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	SREBF2--MEI1	2	17	SREBF2	1254	chr22:42229362:+	MEI1	43789	chr22:42144111:+	ONLY_REF_SPLICE	NO	114	0	0.14	1	0.0223	0.1896	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	HELA_CERVIX	0.14	1	0.2119	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	CRYBG3--TSHZ2	5	4	CRYBG3	1316	chr3:97541199:+	TSHZ2	38126	chr20:51870038:+	ONLY_REF_SPLICE	YES	4	9	0.69	0.5	0.0558	0.0446	CRYBG3->chr3:97540884-97594132:+,chr3:97595819-97663810:+,crystallin_beta-gamma_domain_containing_3,TSHZ2->chr20:51588946-52111869:+,teashirt_zinc_finger_homeobox_2	HELA_CERVIX	0.5	0.69	0.1004	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	IGFBP7--KRT17	6	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0669	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	HELA_CERVIX	1	1	0.0669	TRUE	0	0	0	9	0	TRUE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	3	12	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	22220	0	0	1	0.0335	0.1338	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	1	0.1673	FALSE	231	217	16	283	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ND4L	4	8	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2690	0	0	1	0.0446	0.0892	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HELA_CERVIX	0	1	0.1338	FALSE	344	827	44	306	0	FALSE	ACH-001086
HELA_CERVIX	AP003900.6--AC008132.1	4	7	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	4	0	0.73	1	0.0446	0.0781	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HELA_CERVIX	0.73	1	0.1227	TRUE	0	0	0	12	0	TRUE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ND4L	4	7	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	134	0	0.08	1	0.0446	0.0781	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HELA_CERVIX	0.08	1	0.1227	FALSE	344	826	44	306	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-RNR2	5	3	MT-ND4	1303	chrM:11062:+	MT-RNR2	5933	chrM:2225:+	INCL_NON_REF_SPLICE	YES	21491	13684	0	0	0.0558	0.0335	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0	0	0.0893	FALSE	13	19	3	21	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND6--MT-TE	5	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0.0223	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HELA_CERVIX	1	1	0.0781	FALSE	499	1288	110	792	0	FALSE	ACH-001086
HELA_CERVIX	FTH1--ACTG1	4	5	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	4518	0	0	1	0.0446	0.0558	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HELA_CERVIX	0	1	0.1004	TRUE	0	0	0	64	0	FALSE	ACH-001086
HELA_CERVIX	MT-ATP6--MT-CO1	4	5	MT-ATP6	1225	chrM:8751:+	MT-CO1	5165	chrM:6387:+	INCL_NON_REF_SPLICE	YES	16392	23197	0	0	0.0446	0.0558	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HELA_CERVIX	0	0	0.1004	FALSE	183	104	9	328	0	FALSE	ACH-001086
HELA_CERVIX	MT-ATP6--MT-CO1	5	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	11087	25899	0	0	0.0558	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HELA_CERVIX	0	0	0.067	FALSE	183	104	9	328	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND1--MT-RNR2	3	9	MT-ND1	1297	chrM:3603:+	MT-RNR2	4976	chrM:1690:+	INCL_NON_REF_SPLICE	NO	99	0	0.11	1	0.0335	0.1004	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0.11	1	0.1339	FALSE	114	26	4	85	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	3	9	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22753	8	0	0.6	0.0335	0.1004	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	0.6	0.1339	FALSE	231	217	16	283	0	FALSE	ACH-001086
HELA_CERVIX	SREBF2--MEI1	1	17	SREBF2	1254	chr22:42229362:+	MEI1	40620	chr22:42139084:+	ONLY_REF_SPLICE	YES	114	0	0.14	1	0.0112	0.1896	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	HELA_CERVIX	0.14	1	0.2008	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	SREBF2--MEI1	1	17	SREBF2	1254	chr22:42229362:+	MEI1	41735	chr22:42140977:+	ONLY_REF_SPLICE	NO	114	0	0.14	1	0.0112	0.1896	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	HELA_CERVIX	0.14	1	0.2008	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	MT-CO2--MT-ND2	5	0	MT-CO2	1234	chrM:7819:+	MT-ND2	5523	chrM:5308:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HELA_CERVIX	1	1	0.0558	FALSE	105	46	5	21	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	4	4	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	23877	2	0	0.8	0.0446	0.0446	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	0.8	0.0892	FALSE	231	216	16	283	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	5	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	1	1	0.0558	FALSE	231	205	14	283	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	3	7	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	23445	0	0	1	0.0335	0.0781	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	1	0.1116	FALSE	231	217	16	283	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	4	3	MT-ND4	1295	chrM:11054:+	MT-ATP8	5413	chrM:8400:+	INCL_NON_REF_SPLICE	YES	20508	0	0	1	0.0446	0.0335	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	1	0.0781	FALSE	231	205	14	283	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND1--MT-RNR2	3	6	MT-ND1	1323	chrM:3629:+	MT-RNR2	5476	chrM:2190:+	INCL_NON_REF_SPLICE	YES	109	13236	0.08	0	0.0335	0.0669	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0	0.08	0.1004	FALSE	119	26	5	86	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND5--MT-ATP8	4	2	MT-ND5	1795	chrM:13131:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3779	8	0	0.43	0.0446	0.0223	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	0.43	0.0669	FALSE	43	37	8	105	0	FALSE	ACH-001086
HELA_CERVIX	MT-CO2--MT-CO1	4	1	MT-CO2	1256	chrM:7841:+	MT-CO1	5313	chrM:6532:+	INCL_NON_REF_SPLICE	YES	12	24160	0.29	0	0.0446	0.0112	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HELA_CERVIX	0	0.29	0.0558	FALSE	36	10	0	27	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND1--MT-RNR2	3	5	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	71	13280	0.1	0	0.0335	0.0558	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0	0.1	0.0893	FALSE	120	26	5	87	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	4	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18973	8	0	0.38	0.0446	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	0.38	0.0558	FALSE	231	205	14	283	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-RNR2	3	5	MT-ND4	1454	chrM:11213:+	MT-RNR2	5869	chrM:2161:+	INCL_NON_REF_SPLICE	YES	23877	13195	0	0	0.0335	0.0558	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0	0	0.0893	FALSE	13	19	3	21	0	FALSE	ACH-001086
HELA_CERVIX	TRIM44--ARRB1	3	5	TRIM44	1976	chr11:35685328:+	ARRB1	16861	chr11:75001083:-	ONLY_REF_SPLICE	YES	254	7	0.03	0.53	0.0335	0.0558	{Klijn_CCL:Cervix=1},TRIM44->chr11:35684353-35829775:+,tripartite_motif_containing_44,ARRB1->arrestin_beta_1,chr11:74975226-75062873:-	HELA_CERVIX	0.03	0.53	0.0893	TRUE	0	0	0	1	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ATP8	3	4	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	23865	84	0	0.08	0.0335	0.0446	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	0.08	0.0781	FALSE	231	217	16	283	0	FALSE	ACH-001086
HELA_CERVIX	NBEAL1--CYP20A1	4	0	NBEAL1	4812	chr2:203914698:+	CYP20A1	82936	chr2:204161481:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	NEIGHBORS[12562],NBEAL1->chr2:203879602-204091101:+,neurobeachin_like_1,CYP20A1->chr2:204103663-204163009:+,cytochrome_P450_family_20_subfamily_A_member_1	HELA_CERVIX	1	1	0.0446	FALSE	0	0	0	1	0	FALSE	ACH-001086
HELA_CERVIX	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HELA_CERVIX	1	1	0.0446	FALSE	292	1546	117	613	0	FALSE	ACH-001086
HELA_CERVIX	SLC39A10--SESTD1	3	4	SLC39A10	9336	chr2:196548630:+	SESTD1	25338	chr2:180056593:-	ONLY_REF_SPLICE	YES	75	15	0.09	0.32	0.0335	0.0446	SLC39A10->chr2:196440701-196602426:+,solute_carrier_family_39_member_10,SESTD1->SEC14_and_spectrin_domain_containing_1,chr2:179966419-180129517:-	HELA_CERVIX	0.09	0.32	0.0781	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	TMEM132A--TMEM109	4	0	TMEM132A	6648	chr11:60698131:+	TMEM109	17526	chr11:60687158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	LOCAL_REARRANGEMENT:+:[1020],TMEM132A->chr11:60691935-60704631:+,transmembrane_protein_132A,TMEM109->chr11:60681346-60690915:+,transmembrane_protein_109	HELA_CERVIX	1	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	FTH1--ACTG1	3	3	FTH1	1258	chr11:61734875:-	ACTG1	11019	chr17:79479357:-	INCL_NON_REF_SPLICE	YES	5271	234	0	0.03	0.0335	0.0335	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HELA_CERVIX	0	0.03	0.067	FALSE	0	0	0	64	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND6--MT-TE	3	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0.0335	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HELA_CERVIX	1	1	0.067	FALSE	499	1288	110	792	0	FALSE	ACH-001086
HELA_CERVIX	MT-CO2--MT-CO1	3	2	MT-CO2	1493	chrM:8078:+	MT-CO1	5625	chrM:6844:+	INCL_NON_REF_SPLICE	YES	2	11687	0.71	0	0.0335	0.0223	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HELA_CERVIX	0	0.71	0.0558	FALSE	36	10	0	27	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-ND4L	3	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.83	0.0335	0.0223	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HELA_CERVIX	0.83	1	0.0558	FALSE	344	821	44	306	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-RNR2	3	2	MT-ND4	1222	chrM:10981:+	MT-RNR2	5968	chrM:2260:+	INCL_NON_REF_SPLICE	YES	15999	13421	0	0	0.0335	0.0223	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0	0	0.0558	FALSE	13	19	3	21	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-RNR2	3	2	MT-ND4	1218	chrM:10977:+	MT-RNR2	5959	chrM:2251:+	INCL_NON_REF_SPLICE	YES	15755	13010	0	0	0.0335	0.0223	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0	0	0.0558	FALSE	13	19	3	21	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND4--MT-RNR2	3	2	MT-ND4	1212	chrM:10971:+	MT-RNR2	5959	chrM:2251:+	INCL_NON_REF_SPLICE	YES	15684	13010	0	0	0.0335	0.0223	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HELA_CERVIX	0	0	0.0558	FALSE	13	19	3	21	0	FALSE	ACH-001086
HELA_CERVIX	POLR2A--MT-ATP8	3	2	POLR2A	16966	chr17:7417314:+	MT-ATP8	20688	chrM:8468:+	INCL_NON_REF_SPLICE	YES	432	8	0.01	0.38	0.0335	0.0223	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0.01	0.38	0.0558	FALSE	0	0	0	3	0	FALSE	ACH-001086
HELA_CERVIX	RP11-120D5.1--MID1	3	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	46	0.71	0.1	0.0335	0.0223	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HELA_CERVIX	0.1	0.71	0.0558	FALSE	16	356	14	466	0	FALSE	ACH-001086
HELA_CERVIX	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11060	25657	0	0	0.0335	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HELA_CERVIX	0	0	0.0447	FALSE	183	104	9	328	0	FALSE	ACH-001086
HELA_CERVIX	MT-CO2--MT-ND2	3	1	MT-CO2	1320	chrM:7905:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	63	4501	0.06	0	0.0335	0.0112	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HELA_CERVIX	0	0.06	0.0447	FALSE	105	46	5	21	0	FALSE	ACH-001086
HELA_CERVIX	MT-ND6--MT-TE	3	1	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0.0112	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HELA_CERVIX	1	1	0.0447	FALSE	499	1288	110	792	0	FALSE	ACH-001086
HELA_CERVIX	POLR2A--MT-ATP8	3	1	POLR2A	16269	chr17:7416617:+	MT-ATP8	20653	chrM:8433:+	INCL_NON_REF_SPLICE	YES	942	0	0	1	0.0335	0.0112	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	0	1	0.0447	FALSE	0	0	0	3	0	FALSE	ACH-001086
HELA_CERVIX	SLC7A5--CA5A	2	5	SLC7A5	3780	chr16:87885330:-	CA5A	21087	chr16:87938510:-	ONLY_REF_SPLICE	YES	1964	0	0	1	0.0223	0.0558	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[18531],SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,CA5A->carbonic_anhydrase_5A,chr16:87921625-87970135:-	HELA_CERVIX	0	1	0.0781	FALSE	0	0	0	1	0	FALSE	ACH-001086
HELA_CERVIX	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HELA_CERVIX	1	1	0.0335	TRUE	0	0	0	434	0	FALSE	ACH-001086
HELA_CERVIX	POLR2A--MT-ATP8	3	0	POLR2A	16328	chr17:7416676:+	MT-ATP8	20701	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HELA_CERVIX	1	1	0.0335	FALSE	0	0	0	3	0	FALSE	ACH-001086
HELA_CERVIX	INCENP--RP11-672A2.1	1	7	INCENP	8616	chr11:61908516:+	RP11-672A2.1	21204	chr11:76424230:-	ONLY_REF_SPLICE	YES	142	0	0.05	1	0.0112	0.0781	INCENP->chr11:61891445-61920635:+,inner_centromere_protein,RP11-672A2.1->chr11:76423440-76430652:-	HELA_CERVIX	0.05	1	0.0893	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	INCENP--RP11-672A2.1	1	7	INCENP	9083	chr11:61908983:+	RP11-672A2.1	21204	chr11:76424230:-	ONLY_REF_SPLICE	YES	142	0	0.05	1	0.0112	0.0781	INCENP->chr11:61891445-61920635:+,inner_centromere_protein,RP11-672A2.1->chr11:76423440-76430652:-	HELA_CERVIX	0.05	1	0.0893	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	NCK1--SLC35G2	2	1	NCK1	4708	chr3:136647069:+	SLC35G2	19198	chr3:136573285:+	ONLY_REF_SPLICE	YES	144	35	0.02	0.08	0.0223	0.0112	LOCAL_REARRANGEMENT:+:[6316],NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,SLC35G2->chr3:136537489-136574734:+,solute_carrier_family_35_member_G2	HELA_CERVIX	0.02	0.08	0.0335	TRUE	0	0	0	1	0	FALSE	ACH-001086
HELA_CERVIX	RP11-120D5.1--MID1	2	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	8	46	0.27	0.06	0.0223	0.0112	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HELA_CERVIX	0.06	0.27	0.0335	FALSE	0	48	1	163	0	FALSE	ACH-001086
HELA_CERVIX	RP11-20I20.2--CTBP1	2	1	RP11-20I20.2	1114	chr4:1107540:+	CTBP1	8481	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	32	1	0.09	0.0223	0.0112	LOCAL_INVERSION:+:-:[78471],RP11-20I20.2->chr4:1107427-1126765:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HELA_CERVIX	0.09	1	0.0335	TRUE	0	1	1	6	1	TRUE	ACH-001086
HELA_CERVIX	C4orf32--PPA2	2	0	C4orf32	1337	chr4:113066889:+	PPA2	23161	chr4:106345479:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	C4orf32->chr4:113066553-113116412:+,chromosome_4_open_reading_frame_32,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	FAT1--SEC23A	2	0	FAT1	9221	chr4:187560876:-	SEC23A	56913	chr14:39543734:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	FAT1->ArcherDX_panel,FAT_atypical_cadherin_1,FoundationOne_panel,Oncogene{Bushman},chr4:187508937-187647876:-,SEC23A->Sec23_homolog_A,_coat_complex_II_component,chr14:39501123-39578850:-	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	FER--ZNF131	2	0	FER	5687	chr5:108134090:+	ZNF131	51757	chr5:43122141:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	FER->FER_tyrosine_kinase,chr5:108083523-108532542:+,ZNF131->chr5:43065278-43192123:+,zinc_finger_protein_131	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	GALNT2--PSMB1	2	0	GALNT2	6181	chr1:230339036:+	PSMB1	28501	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GALNT2->chr1:230193536-230417870:+,polypeptide_N-acetylgalactosaminyltransferase_2,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	GPC5--GPC5-IT1	2	0	GPC5	10063	chr13:92797242:+	GPC5-IT1	16096	chr13:93161766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NEIGHBORS_OVERLAP:+:+:[25488],GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5,GPC5-IT1->GPC5_intronic_transcript_1,chr13:93136859-93162347:+	HELA_CERVIX	1	1	0.0223	FALSE	21	23	3	6	0	FALSE	ACH-001086
HELA_CERVIX	GTF2H5--PSMB1	2	0	GTF2H5	2113	chr6:158591570:+	PSMB1	16022	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTF2H5->chr6:158589384-158620376:+,general_transcription_factor_IIH_subunit_5,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	HN1L--RAB40C	2	0	HN1L	1101	chr16:1728357:+	RAB40C	18540	chr16:667208:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like,RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	HNRNPH1--PSMD4	2	0	HNRNPH1	4526	chr5:179050038:-	PSMD4	20404	chr1:151236390:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),PSMD4->chr1:151227179-151239955:+,proteasome_26S_subunit,_non-ATPase_4	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	KANSL1--CBS	2	0	KANSL1	4754	chr17:44270189:-	CBS	34816	chr21:44493451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,CBS->chr21:44473301-44497053:-,cystathionine-beta-synthase	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	LRRC41--ARIH1	2	0	LRRC41	5703	chr1:46763235:-	ARIH1	26941	chr15:72855735:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LRRC41->chr1:46726868-46769280:-,leucine_rich_repeat_containing_41,ARIH1->ariadne_RBR_E3_ubiquitin_protein_ligase_1,chr15:72766667-72879692:+	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HELA_CERVIX	1	1	0.0223	TRUE	3	14	2	43	0	FALSE	ACH-001086
HELA_CERVIX	PTGFRN--ODF2L	2	0	PTGFRN	1196	chr1:117452874:+	ODF2L	36244	chr1:86820542:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	PTGFRN->chr1:117452679-117532980:+,prostaglandin_F2_receptor_inhibitor,ODF2L->chr1:86814344-86862023:-,outer_dense_fiber_of_sperm_tails_2_like	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	RAB31--VAPA	2	0	RAB31	1280	chr18:9708441:+	VAPA	26849	chr18:9931807:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	{Klijn_CCL:Pancreas=1},NEIGHBORS[51451],RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	HELA_CERVIX	1	1	0.0223	FALSE	4	4	0	3	0	FALSE	ACH-001086
HELA_CERVIX	TLN2--TPM1	2	0	TLN2	1160	chr15:62682884:+	TPM1	85052	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_FI:{Heart=[count:2=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},TLN2->chr15:62682725-63136830:+,talin_2,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	HELA_CERVIX	1	1	0.0223	TRUE	2	1	0	6	0	FALSE	ACH-001086
HELA_CERVIX	TM2D1--ATL3	2	0	TM2D1	1522	chr1:62190574:-	ATL3	20718	chr11:63426724:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	TM2D1->TM2_domain_containing_1,chr1:62146718-62191095:-,ATL3->atlastin_GTPase_3,chr11:63391559-63439393:-	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	TNFAIP8--CDKL3	2	0	TNFAIP8	1216	chr5:118604602:+	CDKL3	36581	chr5:133541822:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,CDKL3->chr5:133541305-133706738:-,cyclin_dependent_kinase_like_3	HELA_CERVIX	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.25	1	0.0112	0.0335	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HELA_CERVIX	0.25	1	0.0447	FALSE	164	806	69	479	0	FALSE	ACH-001086
HELA_CERVIX	POLE4--RP11-355F16.1	1	3	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	410	0	0.01	1	0.0112	0.0335	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	HELA_CERVIX	0.01	1	0.0447	FALSE	5	7	0	37	0	FALSE	ACH-001086
HELA_CERVIX	SLC39A10--SESTD1	1	3	SLC39A10	9336	chr2:196548630:+	SESTD1	26418	chr2:180047915:-	ONLY_REF_SPLICE	YES	75	66	0.05	0.06	0.0112	0.0335	SLC39A10->chr2:196440701-196602426:+,solute_carrier_family_39_member_10,SESTD1->SEC14_and_spectrin_domain_containing_1,chr2:179966419-180129517:-	HELA_CERVIX	0.05	0.06	0.0447	TRUE	0	0	0	1	0	FALSE	ACH-001086
HELA_CERVIX	B4GALT1--BAG1	1	2	B4GALT1	1599	chr9:33166756:-	BAG1	16811	chr9:33262828:-	ONLY_REF_SPLICE	NO	1297	1162	0	0	0.0112	0.0223	GTEx_v2:{count=2;pct=0.02%;dist=Liver=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Cervix=3},LOCAL_REARRANGEMENT:-:[80464],B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,BAG1->BCL2_associated_athanogene_1,Oncogene{Bushman},chr9:33247818-33264761:-	HELA_CERVIX	0	0	0.0335	FALSE	0	5	1	5	3	FALSE	ACH-001086
HELA_CERVIX	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0112	0.0223	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HELA_CERVIX	1	1	0.0335	FALSE	515	4851	409	746	0	FALSE	ACH-001086
HELA_CERVIX	ACBD4--RP11-1149O23.3	1	1	ACBD4	6422	chr17:43216527:+	RP11-1149O23.3	14675	chr8:23085579:+	ONLY_REF_SPLICE	YES	12	24	0.14	0.08	0.0112	0.0112	ACBD4->acyl-CoA_binding_domain_containing_4,chr17:43209967-43221548:+,RP11-1149O23.3->chr8:23081984-23088439:+	HELA_CERVIX	0.08	0.14	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-001086
HELA_CERVIX	CHSY3--CTD-2410N18.5	1	1	CHSY3	3444	chr5:129244053:+	CTD-2410N18.5	12251	chr5:133509713:-	ONLY_REF_SPLICE	YES	26	6	0.07	0.25	0.0112	0.0112	CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,CTD-2410N18.5->chr5:133502861-133561762:-	HELA_CERVIX	0.07	0.25	0.0224	TRUE	1	0	0	2	0	TRUE	ACH-001086
HELA_CERVIX	COL25A1--PPA2	1	1	COL25A1	3005	chr4:110221739:-	PPA2	48796	chr4:106377902:-	ONLY_REF_SPLICE	NO	94	455	0.02	0	0.0112	0.0112	COL25A1->chr4:109731877-110223813:-,collagen_type_XXV_alpha_1,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	HELA_CERVIX	0	0.02	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-001086
HELA_CERVIX	LDLRAD4--FAM210A	1	1	LDLRAD4	7502	chr18:13438383:+	FAM210A	39447	chr18:13682104:-	ONLY_REF_SPLICE	YES	42	103	0.05	0.02	0.0112	0.0112	LOCAL_INVERSION:+:-:[10592],LDLRAD4->chr18:13217497-13652754:+,low_density_lipoprotein_receptor_class_A_domain_containing_4,FAM210A->chr18:13663346-13726662:-,family_with_sequence_similarity_210_member_A	HELA_CERVIX	0.02	0.05	0.0224	TRUE	0	1	0	1	1	FALSE	ACH-001086
HELA_CERVIX	LSMD1--TK1	1	1	LSMD1	2175	chr17:7786553:-	TK1	14067	chr17:76171699:-	ONLY_REF_SPLICE	YES	46	755	0.04	0	0.0112	0.0112	LSMD1->chr17:7760003-7788556:-,TK1->Oncogene{Bushman},chr17:76170160-76183314:-,thymidine_kinase_1	HELA_CERVIX	0	0.04	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-001086
HELA_CERVIX	MRPL20--ATAD3B	1	1	MRPL20	2505	chr1:1341189:-	ATAD3B	9227	chr1:1412654:+	ONLY_REF_SPLICE	YES	1068	120	0	0.02	0.0112	0.0112	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[64450],MRPL20->chr1:1337288-1342693:-,mitochondrial_ribosomal_protein_L20,ATAD3B->ATPase_family,_AAA_domain_containing_3B,chr1:1407143-1433228:+	HELA_CERVIX	0	0.02	0.0224	FALSE	1	0	0	1	0	FALSE	ACH-001086
HELA_CERVIX	PROSC--DDB2	1	1	PROSC	2996	chr8:37623873:+	DDB2	13718	chr11:47237887:+	ONLY_REF_SPLICE	NO	136	391	0.01	0.01	0.0112	0.0112	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),DDB2->Oncogene{Bushman},chr11:47236493-47260767:+,damage_specific_DNA_binding_protein_2	HELA_CERVIX	0.01	0.01	0.0224	FALSE	0	0	0	2	0	FALSE	ACH-001086
HELA_CERVIX	PRR16--CTD-2334D19.1	1	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	22	0	0.08	1	0.0112	0.0112	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HELA_CERVIX	0.08	1	0.0224	FALSE	56	216	12	147	0	FALSE	ACH-001086
HELA_CERVIX	TMEM18--PTMA	1	1	TMEM18	1151	chr2:677289:-	PTMA	16051	chr2:232576058:+	ONLY_REF_SPLICE	NO	159	6065	0.01	0	0.0112	0.0112	TMEM18->chr2:667335-677439:-,transmembrane_protein_18,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HELA_CERVIX	0	0.01	0.0224	FALSE	0	0	0	2	0	FALSE	ACH-001086
HELA_CERVIX	ZDHHC21--RIMKLB	1	1	ZDHHC21	4581	chr9:14680031:-	RIMKLB	41036	chr12:8933171:+	ONLY_REF_SPLICE	YES	40	118	0.05	0.02	0.0112	0.0112	ZDHHC21->chr9:14611069-14693469:-,zinc_finger_DHHC-type_containing_21,RIMKLB->chr12:8834196-8935691:+,ribosomal_modification_protein_rimK-like_family_member_B	HELA_CERVIX	0.02	0.05	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-001086
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRA2A--TACC2	167	41	TRA2A	1253	chr7:23571408:-	TACC2	39474	chr10:123954555:+	ONLY_REF_SPLICE	YES	267	1	0.44	1	2.067	0.5075	TRA2A->chr7:23544399-23571660:-,transformer_2_alpha_homolog,TACC2->chr10:123748689-124014060:+,transforming_acidic_coiled-coil_containing_protein_2	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	2.5745	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	157	38	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.9433	0.4703	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.4136	TRUE	508	994	45	981	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC072062.1	114	47	IKZF2	5217	chr2:214012432:-	AC072062.1	32529	chr2:215826534:+	ONLY_REF_SPLICE	YES	56	6	0.74	0.96	1.411	0.5817	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC072062.1->chr2:215674953-215827998:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	0.96	1.9927	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	101	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	293	7	0.27	0.94	1.2501	0.0619	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.94	1.312	TRUE	519	3926	326	965	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC009120.4--RP11-293B20.2	68	21	AC009120.4	4979	chr16:74239804:-	RP11-293B20.2	20192	chr16:33424754:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.8417	0.2599	AC009120.4->chr16:74088050-74330660:-,RP11-293B20.2->chr16:33390406-33425011:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1016	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV8-6--TRAC	52	66	TRAV8-6	1482	chr14:22447180:+	TRAC	4663	chr14:23016447:+	INCL_NON_REF_SPLICE	YES	239	0	0.33	1	0.6436	0.8169	GTEx_FI:{Blood=[count:2=pct:1.1]},HGNC_GENEFAM,TRAV8-6->T_cell_receptor_alpha_variable_8-6,chr14:22446699-22447360:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	1.4605	TRUE	2	15	0	1	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	56	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6931	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6931	TRUE	0	0	0	518	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV8-6--TRAC	3	198	TRAV8-6	1654	chr14:22447352:+	TRAC	4663	chr14:23016447:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	2.4508	GTEx_FI:{Blood=[count:2=pct:1.1]},HGNC_GENEFAM,TRAV8-6->T_cell_receptor_alpha_variable_8-6,chr14:22446699-22447360:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.4879	TRUE	2	15	0	1	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC072062.1	24	78	IKZF2	5454	chr2:214012195:-	AC072062.1	32529	chr2:215826534:+	INCL_NON_REF_SPLICE	YES	106	6	0.49	0.94	0.2971	0.9654	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC072062.1->chr2:215674953-215827998:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.94	1.2625	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC072062.1	26	58	IKZF2	5217	chr2:214012432:-	AC072062.1	30207	chr2:215812549:+	ONLY_REF_SPLICE	YES	56	1	0.6	0.99	0.3218	0.7179	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC072062.1->chr2:215674953-215827998:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.99	1.0397	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC072062.1	5	92	IKZF2	5454	chr2:214012195:-	AC072062.1	30207	chr2:215812549:+	INCL_NON_REF_SPLICE	YES	106	1	0.48	0.99	0.0619	1.1387	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC072062.1->chr2:215674953-215827998:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.99	1.2006	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-344E13.3--UBBP4	21	28	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2599	0.3466	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6065	TRUE	23	13	0	54	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC072062.1	5	82	IKZF2	5454	chr2:214012195:-	AC072062.1	31331	chr2:215825117:+	INCL_NON_REF_SPLICE	YES	106	1	0.45	0.99	0.0619	1.015	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC072062.1->chr2:215674953-215827998:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.99	1.0769	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC072062.1	13	50	IKZF2	5217	chr2:214012432:-	AC072062.1	31331	chr2:215825117:+	INCL_NON_REF_SPLICE	YES	56	1	0.53	0.98	0.1609	0.6189	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC072062.1->chr2:215674953-215827998:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	0.98	0.7798	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC072062.1	1	92	IKZF2	6637	chr2:213962601:-	AC072062.1	30207	chr2:215812549:+	ONLY_REF_SPLICE	NO	109	1	0.46	0.99	0.0124	1.1387	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC072062.1->chr2:215674953-215827998:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.99	1.1511	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRR4--FER1L6	18	11	PRR4	1192	chr12:11324021:-	FER1L6	29030	chr8:124982275:+	ONLY_REF_SPLICE	YES	6	0	0.83	1	0.2228	0.1362	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),FER1L6->chr8:124864227-125132302:+,fer-1_like_family_member_6	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.359	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	18	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2228	0.0371	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2599	FALSE	462	80	0	856	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12544	chr4:174253295:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2104	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2104	TRUE	0	0	0	518	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	16	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.198	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.198	TRUE	0	0	0	434	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHRS4L2--RGS6	14	6	DHRS4L2	1394	chr14:24439541:+	RGS6	46486	chr14:73029125:+	ONLY_REF_SPLICE	YES	5	1	0.8	0.95	0.1733	0.0743	DHRS4L2->chr14:24439148-24475617:+,dehydrogenase/reductase_(SDR_family)_member_4_like_2,RGS6->chr14:72399156-73030654:+,regulator_of_G-protein_signaling_6	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.95	0.2476	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC16A--ATP8A2	10	9	CLEC16A	13117	chr16:11114182:+	ATP8A2	44539	chr13:26104137:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1238	0.1114	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,ATP8A2->ATPase_phospholipid_transporting_8A2,chr13:25946209-26599989:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2352	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4D--RP11-479O16.1	10	7	PDE4D	45091	chr5:58285582:-	RP11-479O16.1	58465	chr5:58112961:-	INCL_NON_REF_SPLICE	YES	100	0	0.15	1	0.1238	0.0866	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-479O16.1->chr5:58037408-58112926:-	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.2104	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	22	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	4	0.96	0.87	0.0619	0.2723	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	0.96	0.3342	FALSE	189	492	56	216	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	8	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.82	0.099	0.0124	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.1114	FALSE	515	4851	409	746	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP3-514A23.2--DHRS4-AS1	7	2	RP3-514A23.2	1799	chr14:73061035:-	DHRS4-AS1	9322	chr14:24410367:-	ONLY_REF_SPLICE	YES	1	49	0.9	0.16	0.0866	0.0248	RP3-514A23.2->chr14:73019288-73061833:-,DHRS4-AS1->DHRS4_antisense_RNA_1,chr14:24407940-24409196:+,chr14:24407940-24458048:-	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.9	0.1114	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT1--AC009120.4	6	4	CNOT1	37789	chr16:58568051:-	AC009120.4	55306	chr16:74240064:-	ONLY_REF_SPLICE	YES	135	6	0.07	0.62	0.0743	0.0495	CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,AC009120.4->chr16:74088050-74330660:-	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.62	0.1238	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0866	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0866	TRUE	1	39	0	134	39	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-316P17.2--RP5-1050E16.2	6	1	RP11-316P17.2	1338	chr9:92316903:+	RP5-1050E16.2	8236	chr9:92522698:+	ONLY_REF_SPLICE	YES	117	0	0.06	1	0.0743	0.0124	GTEx_FI:{Lung=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},RP11-316P17.2->chr9:92316566-92334585:+,RP5-1050E16.2->chr9:92501142-92523200:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0867	TRUE	2	7	0	5	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	46	25	0.16	0.26	0.0619	0.0495	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.26	0.1114	TRUE	267	562	48	632	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	5	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0619	0.0371	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.099	FALSE	416	2512	207	587	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLDC1--COTL1	5	2	TLDC1	1088	chr16:84587552:-	COTL1	24450	chr16:84623868:-	ONLY_REF_SPLICE	YES	25	1257	0.22	0.01	0.0619	0.0248	LOCAL_REARRANGEMENT:-:[11561],TLDC1->TBC/LysM-associated_domain_containing_1,chr16:84511681-84587639:-,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.22	0.0867	FALSE	0	1	0	3	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SP100--APOLD1	5	1	SP100	9390	chr2:231314970:+	APOLD1	45671	chr12:12939843:+	ONLY_REF_SPLICE	YES	58	3	0.09	0.67	0.0619	0.0124	SP100->SP100_nuclear_antigen,chr2:231280657-231408805:+,APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.67	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HECTD1--PRAMEF20	5	0	HECTD1	39396	chr14:31575852:-	PRAMEF20	48309	chr1:13742802:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,PRAMEF20->PRAME_family_member_20,chr1:13736907-13747803:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0619	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0619	FALSE	13	9	0	364	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0619	FALSE	13	9	0	364	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0619	TRUE	0	0	0	434	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SP100--APOLD1	4	4	SP100	9390	chr2:231314970:+	APOLD1	43506	chr12:12879231:+	ONLY_REF_SPLICE	YES	58	7	0.12	0.53	0.0495	0.0495	SP100->SP100_nuclear_antigen,chr2:231280657-231408805:+,APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.53	0.099	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0.0371	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0866	FALSE	462	80	0	856	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0495	0.0124	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0619	FALSE	189	492	56	216	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	1	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0371	0.0124	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0495	FALSE	189	492	56	216	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	3	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0.0124	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0495	TRUE	62	24	1	171	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--RPLP2	3	0	C17orf76-AS1	1593	chr17:16342728:+	RPLP2	16091	chr11:812535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	C17orf76-AS1->chr17:16342136-16381992:+,RPLP2->chr11:809647-812880:+,ribosomal_protein_lateral_stalk_subunit_P2	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC16A--ATP8A2	3	0	CLEC16A	11936	chr16:11097114:+	ATP8A2	44539	chr13:26104137:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,ATP8A2->ATPase_phospholipid_transporting_8A2,chr13:25946209-26599989:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	3	0	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0371	TRUE	0	1	0	84	1	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0371	TRUE	0	0	0	434	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0.0124	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	FALSE	407	2205	196	549	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SP100--APOLD1	2	1	SP100	8845	chr2:231314425:+	APOLD1	45671	chr12:12939843:+	ONLY_REF_SPLICE	YES	96	3	0.03	0.5	0.0248	0.0124	SP100->SP100_nuclear_antigen,chr2:231280657-231408805:+,APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.5	0.0372	TRUE	0	0	0	1	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC024084.1--AC009784.3	2	0	AC024084.1	2134	chr7:135715781:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	FALSE	0	3	0	12	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTB-55O6.12--DDX39A	2	0	CTB-55O6.12	1045	chr19:14248035:+	DDX39A	12887	chr19:14524036:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	CTB-55O6.12->chr19:14247991-14282079:+,DDX39A->DEAD-box_helicase_39A,chr19:14519631-14530192:-	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCUN1D2--TFDP1	2	0	DCUN1D2	1286	chr13:114144982:-	TFDP1	18891	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[93746],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	1	0	6	1	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GEN1--FUS	2	0	GEN1	1488	chr2:17935612:+	FUS	28848	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GEN1->GEN1,_Holliday_junction_5'_flap_endonuclease,Oncogene{Bushman},chr2:17935125-17966632:+,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	2	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	FALSE	0	26	0	50	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBXN7--NRROS	2	0	UBXN7	1148	chr3:196159198:-	NRROS	30319	chr3:196386623:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	UBXN7->UBX_domain_protein_7,chr3:196074533-196159345:-,NRROS->chr3:196366557-196388875:+,negative_regulator_of_reactive_oxygen_species	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	1	3	NOC4L	5448	chr12:132633440:+	FBRSL1	21444	chr12:133124589:+	ONLY_REF_SPLICE	YES	63	45	0.06	0.08	0.0124	0.0371	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.08	0.0495	TRUE	2	2	0	3	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU2--RNASEH2B	1	2	DLEU2	2589	chr13:50655959:-	RNASEH2B	16192	chr13:51501543:+	ONLY_REF_SPLICE	NO	67	103	0.04	0.03	0.0124	0.0248	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),RNASEH2B->chr13:51483814-51544592:+,ribonuclease_H2_subunit_B	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.0372	TRUE	0	1	0	4	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4D--RP11-479O16.1	1	2	PDE4D	45091	chr5:58285582:-	RP11-479O16.1	62765	chr5:58037827:-	ONLY_REF_SPLICE	YES	100	4	0.03	0.43	0.0124	0.0248	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-479O16.1->chr5:58037408-58112926:-	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.43	0.0372	TRUE	0	0	0	1	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLDC1--COTL1	1	2	TLDC1	12823	chr16:84520237:-	COTL1	24450	chr16:84623868:-	ONLY_REF_SPLICE	YES	55	1257	0.05	0	0.0124	0.0248	LOCAL_REARRANGEMENT:-:[11561],TLDC1->TBC/LysM-associated_domain_containing_1,chr16:84511681-84587639:-,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0372	FALSE	0	0	0	1	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC9--TPX2	1	1	CCDC9	6547	chr19:47768203:+	TPX2	14944	chr20:30330344:+	ONLY_REF_SPLICE	YES	22	295	0.08	0.01	0.0124	0.0124	CCDC9->chr19:47759237-47775210:+,coiled-coil_domain_containing_9,TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.08	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FRYL--OCIAD1	1	1	FRYL	4609	chr4:48686690:-	OCIAD1	90028	chr4:48850416:+	ONLY_REF_SPLICE	YES	48	436	0.04	0	0.0124	0.0124	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Heart_-_Left_Ventricle=1},LOCAL_INVERSION:-:+:[24890],FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,OCIAD1->OCIA_domain_containing_1,chr4:48807229-48863834:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOR1--SLTM	1	1	NCOR1	23643	chr17:16022737:-	SLTM	70538	chr15:59192079:-	ONLY_REF_SPLICE	YES	112	174	0.02	0.01	0.0124	0.0124	NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1,SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOR1--UBB	1	1	NCOR1	3051	chr17:16118676:-	UBB	62933	chr17:16285216:+	ONLY_REF_SPLICE	YES	100	141	0.02	0.01	0.0124	0.0124	GTEx_FI:{Muscle=[count:4=pct:1.7],Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=9;pct=0.10%;dist=Muscle_-_Skeletal=4,Artery_-_Tibial=1,Stomach=1,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1},NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1,UBB->chr17:16284112-16286059:+,ubiquitin_B	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0248	FALSE	5	1	0	2	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	1	1	NOC4L	2218	chr12:132630210:+	FBRSL1	23658	chr12:133144067:+	ONLY_REF_SPLICE	YES	78	60	0.03	0.03	0.0124	0.0124	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.03	0.0248	TRUE	2	2	0	6	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0124	0.0124	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	FALSE	292	1546	117	613	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	QTRT1--ILF3	1	1	QTRT1	1825	chr19:10812930:+	ILF3	26932	chr19:10798022:+	ONLY_REF_SPLICE	YES	74	38	0.03	0.05	0.0124	0.0124	LOCAL_REARRANGEMENT:+:[9013],QTRT1->chr19:10812106-10824113:+,queuine_tRNA-ribosyltransferase_catalytic_subunit_1,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.05	0.0248	TRUE	0	0	0	1	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC9B2--FIP1L1	1	1	SLC9B2	10967	chr4:103971397:-	FIP1L1	33426	chr4:54265897:+	ONLY_REF_SPLICE	YES	30	199	0.06	0.01	0.0124	0.0124	SLC9B2->chr4:103941025-104006986:-,solute_carrier_family_9_member_B2,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAF3--ATP5C1	1	1	TAF3	2615	chr10:7866523:+	ATP5C1	16733	chr10:7839010:+	ONLY_REF_SPLICE	YES	27	572	0.07	0	0.0124	0.0124	GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[10689],TAF3->TATA-box_binding_protein_associated_factor_3,chr10:7860467-8058590:+,ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0248	FALSE	0	2	0	4	2	FALSE	ACH-000509
HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBN2--TTC26	1	1	UBN2	3674	chr7:138921843:+	TTC26	44236	chr7:138845694:+	ONLY_REF_SPLICE	NO	2	34	0.5	0.06	0.0124	0.0124	LOCAL_REARRANGEMENT:+:[38370],UBN2->chr7:138915102-138992982:+,ubinuclein_2,TTC26->chr7:138818490-138876732:+,tetratricopeptide_repeat_domain_26	HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.5	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000509
SKLU1_LUNG	RN7SL3--RN7SL2	5	614	RN7SL3	1297	chr14:50320336:-	RN7SL2	4414	chr14:50329451:-	INCL_NON_REF_SPLICE	YES	0	425	1	0.59	0.0372	4.5688	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.59	1	4.606	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	4	582	RN7SL3	1246	chr14:50320387:-	RN7SL2	4319	chr14:50329546:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	4.3307	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	4.3605	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	37	441	RN7SL3	1231	chr14:50320402:-	RN7SL2	4348	chr14:50329517:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2753	3.2815	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	3.5568	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	16	493	RN7SL3	1237	chr14:50320396:-	RN7SL2	4354	chr14:50329511:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1191	3.6685	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	3.7876	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	508	RN7SL3	1295	chr14:50320338:-	RN7SL2	4459	chr14:50329406:-	INCL_NON_REF_SPLICE	YES	0	1129	1	0.31	0.0223	3.7801	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.31	1	3.8024	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	4	460	RN7SL3	1231	chr14:50320402:-	RN7SL2	4321	chr14:50329544:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	3.4229	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	3.4527	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	CTD-2328D6.1--MT-RNR2	104	32	CTD-2328D6.1	1345	chrX:108297448:-	MT-RNR2	5251	chrM:2489:+	INCL_NON_REF_SPLICE	YES	32	9335	0.81	0.01	0.7739	0.2381	CTD-2328D6.1->chrX:108297361-108297792:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0.01	0.81	1.012	FALSE	0	3	0	1	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	372	RN7SL3	1238	chr14:50320395:-	RN7SL2	4390	chr14:50329475:-	INCL_NON_REF_SPLICE	YES	0	4	1	0.99	0.0223	2.7681	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.99	1	2.7904	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	47	182	RN7SL3	1236	chr14:50320397:-	RN7SL2	4451	chr14:50329414:-	INCL_NON_REF_SPLICE	YES	0	1093	1	0.17	0.3497	1.3543	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.17	1	1.704	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	CTD-2328D6.1--MT-RNR2	67	2	CTD-2328D6.1	1177	chrX:108297616:-	MT-RNR2	4967	chrM:2205:+	INCL_NON_REF_SPLICE	YES	1969	9783	0.03	0.01	0.4986	0.0149	CTD-2328D6.1->chrX:108297361-108297792:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0.01	0.03	0.5135	FALSE	0	3	0	1	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	39	113	RN7SL3	1216	chr14:50320417:-	RN7SL2	4438	chr14:50329427:-	INCL_NON_REF_SPLICE	YES	0	1025	1	0.13	0.2902	0.8408	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.13	1	1.131	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	21	181	RN7SL3	1173	chr14:50320460:-	RN7SL2	4338	chr14:50329527:-	INCL_NON_REF_SPLICE	NO	64	0	0.76	1	0.1563	1.3468	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.76	1	1.5031	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	237	RN7SL3	1193	chr14:50320440:-	RN7SL2	4348	chr14:50329517:-	INCL_NON_REF_SPLICE	YES	40	0	0.86	1	0.0223	1.7635	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.86	1	1.7858	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	4	230	RN7SL3	1246	chr14:50320387:-	RN7SL2	4459	chr14:50329406:-	INCL_NON_REF_SPLICE	YES	0	1129	1	0.17	0.0298	1.7114	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.17	1	1.7412	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	17	168	RN7SL3	1234	chr14:50320399:-	RN7SL2	4449	chr14:50329416:-	INCL_NON_REF_SPLICE	YES	0	1077	1	0.15	0.1265	1.2501	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.15	1	1.3766	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	8	203	RN7SL3	1180	chr14:50320453:-	RN7SL2	4344	chr14:50329521:-	INCL_NON_REF_SPLICE	YES	75	0	0.74	1	0.0595	1.5105	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.74	1	1.57	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	34	90	RN7SL3	1164	chr14:50320469:-	RN7SL2	4371	chr14:50329494:-	INCL_NON_REF_SPLICE	NO	57	1	0.69	0.99	0.253	0.6697	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.69	0.99	0.9227	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	CTD-2328D6.1--MT-RNR2	53	12	CTD-2328D6.1	1436	chrX:108297357:-	MT-RNR2	5264	chrM:2502:+	INCL_NON_REF_SPLICE	YES	0	8229	1	0.01	0.3944	0.0893	CTD-2328D6.1->chrX:108297361-108297792:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0.01	1	0.4837	FALSE	0	3	0	1	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	202	RN7SL3	1193	chr14:50320440:-	RN7SL2	4371	chr14:50329494:-	INCL_NON_REF_SPLICE	YES	40	1	0.84	1	0.0223	1.5031	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.84	1	1.5254	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	201	RN7SL3	1179	chr14:50320454:-	RN7SL2	4348	chr14:50329517:-	INCL_NON_REF_SPLICE	YES	69	0	0.75	1	0.0223	1.4957	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.75	1	1.518	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	5	189	RN7SL3	1176	chr14:50320457:-	RN7SL2	4350	chr14:50329515:-	INCL_NON_REF_SPLICE	YES	66	0	0.75	1	0.0372	1.4064	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.75	1	1.4436	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	193	RN7SL3	1236	chr14:50320397:-	RN7SL2	4443	chr14:50329422:-	INCL_NON_REF_SPLICE	YES	0	1040	1	0.16	0.0223	1.4361	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.16	1	1.4584	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	8	169	RN7SL3	1208	chr14:50320425:-	RN7SL2	4403	chr14:50329462:-	INCL_NON_REF_SPLICE	NO	0	16	1	0.92	0.0595	1.2575	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.92	1	1.317	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	MT-ND4--MT-ND4L	13	139	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	3716	1	0.04	0.99	0.0967	1.0343	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKLU1_LUNG	0.04	0.99	1.131	FALSE	344	827	44	306	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	6	166	RN7SL3	1206	chr14:50320427:-	RN7SL2	4402	chr14:50329463:-	INCL_NON_REF_SPLICE	YES	0	16	1	0.91	0.0446	1.2352	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.91	1	1.2798	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	MT-ND6--MT-TE	45	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3348	0.0298	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKLU1_LUNG	1	1	0.3646	FALSE	499	1288	110	792	0	FALSE	ACH-000309
SKLU1_LUNG	AHCY--ASIP	42	2	AHCY	2446	chr20:32891049:-	ASIP	19638	chr20:32856797:+	ONLY_REF_SPLICE	YES	37	0	0.54	1	0.3125	0.0149	LOCAL_INVERSION:-:+:[10924],AHCY->adenosylhomocysteinase,chr20:32868074-32899608:-,ASIP->agouti_signaling_protein,chr20:32782375-32857150:+	SKLU1_LUNG	0.54	1	0.3274	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	42	0	RN7SK	1281	chr6:52860698:+	RN7SKP185	4553	chr20:36603662:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3125	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.3125	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	MT-ND4--MT-ND4L	6	141	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	0	0.99	1	0.0446	1.0492	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKLU1_LUNG	0.99	1	1.0938	FALSE	344	821	44	306	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	40	0	RN7SL3	1216	chr14:50320417:-	RN7SL2	4515	chr14:50329350:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2976	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.2976	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	4	141	RN7SL3	1180	chr14:50320453:-	RN7SL2	4378	chr14:50329487:-	INCL_NON_REF_SPLICE	YES	75	1	0.66	0.99	0.0298	1.0492	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.66	0.99	1.079	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	TIMM23B--LINC00843	36	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2679	0.0893	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKLU1_LUNG	1	1	0.3572	TRUE	508	994	45	981	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	37	0	RN7SL3	1215	chr14:50320418:-	RN7SL2	4510	chr14:50329355:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2753	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.2753	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	COQ2--LINC00616	32	12	COQ2	5943	chr4:84193240:-	LINC00616	22819	chr4:139012193:-	ONLY_REF_SPLICE	YES	46	0	0.49	1	0.2381	0.0893	COQ2->chr4:84182689-84206067:-,coenzyme_Q2,_polyprenyltransferase,LINC00616->chr4:138948576-139051863:-,long_intergenic_non-protein_coding_RNA_616	SKLU1_LUNG	0.49	1	0.3274	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	33	0	RN7SK	1302	chr6:52860719:+	RN7SKP185	4564	chr20:36603651:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2456	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.2456	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	CTD-2328D6.1--MT-RNR2	20	48	CTD-2328D6.1	1417	chrX:108297376:-	MT-RNR2	4972	chrM:2210:+	INCL_NON_REF_SPLICE	YES	0	10140	1	0.01	0.1488	0.3572	CTD-2328D6.1->chrX:108297361-108297792:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0.01	1	0.506	FALSE	0	3	0	1	0	FALSE	ACH-000309
SKLU1_LUNG	ZNF654--HMGB2	32	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2381	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKLU1_LUNG	1	1	0.2381	TRUE	0	0	0	518	0	FALSE	ACH-000309
SKLU1_LUNG	FASTKD3--LINC01019	29	9	FASTKD3	5614	chr5:7862936:-	LINC01019	12954	chr5:3531992:-	ONLY_REF_SPLICE	YES	26	0	0.59	1	0.2158	0.067	FASTKD3->FAST_kinase_domains_3,chr5:7859272-7869150:-,LINC01019->chr5:3417266-3536208:-,long_intergenic_non-protein_coding_RNA_1019	SKLU1_LUNG	0.59	1	0.2828	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	MT-TA--MT-TC	30	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2232	0.0298	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKLU1_LUNG	1	1	0.253	FALSE	462	80	0	856	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	6	88	RN7SL3	1194	chr14:50320439:-	RN7SL2	4400	chr14:50329465:-	INCL_NON_REF_SPLICE	YES	25	17	0.79	0.85	0.0446	0.6548	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.79	0.85	0.6994	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	26	0	RN7SL3	1214	chr14:50320419:-	RN7SL2	4510	chr14:50329355:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1935	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.1935	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	19	21	RN7SL3	1179	chr14:50320454:-	RN7SL2	4475	chr14:50329390:-	INCL_NON_REF_SPLICE	YES	69	826	0.37	0.05	0.1414	0.1563	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.05	0.37	0.2977	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	MT-ND6--MT-TE	17	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1265	0.1265	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKLU1_LUNG	0.97	1	0.253	FALSE	499	1288	110	792	0	FALSE	ACH-000309
SKLU1_LUNG	CTD-2328D6.1--MT-RNR2	7	50	CTD-2328D6.1	1428	chrX:108297365:-	MT-RNR2	4983	chrM:2221:+	INCL_NON_REF_SPLICE	YES	0	10848	1	0.01	0.0521	0.3721	CTD-2328D6.1->chrX:108297361-108297792:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0.01	1	0.4242	FALSE	0	3	0	1	0	FALSE	ACH-000309
SKLU1_LUNG	TIMM23--RP11-464F9.1	19	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	55	3	0.27	0.87	0.1414	0.0074	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKLU1_LUNG	0.27	0.87	0.1488	TRUE	519	3926	326	965	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	19	0	RN7SK	1274	chr6:52860691:+	RN7SKP185	4540	chr20:36603675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1414	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.1414	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	MT-ND4--MT-ND4L	9	33	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	14	0	0.75	1	0.067	0.2456	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKLU1_LUNG	0.75	1	0.3126	FALSE	344	826	44	306	0	FALSE	ACH-000309
SKLU1_LUNG	MT-ND6--MT-TE	16	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1191	0.0298	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKLU1_LUNG	1	1	0.1489	FALSE	499	1288	110	792	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	15	8	RN7SL3	1195	chr14:50320438:-	RN7SL2	4496	chr14:50329369:-	INCL_NON_REF_SPLICE	YES	10	25	0.7	0.48	0.1116	0.0595	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.48	0.7	0.1711	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	54	RN7SL3	1193	chr14:50320440:-	RN7SL2	4418	chr14:50329447:-	INCL_NON_REF_SPLICE	YES	40	598	0.59	0.09	0.0223	0.4018	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.09	0.59	0.4241	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	4	39	RN7SL3	1179	chr14:50320454:-	RN7SL2	4448	chr14:50329417:-	INCL_NON_REF_SPLICE	YES	69	1060	0.38	0.04	0.0298	0.2902	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.04	0.38	0.32	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	MT-ND6--MT-TE	6	26	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0446	0.1935	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKLU1_LUNG	0.97	1	0.2381	FALSE	499	1288	110	792	0	FALSE	ACH-000309
SKLU1_LUNG	CTD-2328D6.1--MT-RNR2	9	9	CTD-2328D6.1	1359	chrX:108297434:-	MT-RNR2	5266	chrM:2504:+	INCL_NON_REF_SPLICE	YES	4	8000	0.82	0	0.067	0.067	CTD-2328D6.1->chrX:108297361-108297792:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0	0.82	0.134	FALSE	0	3	0	1	0	FALSE	ACH-000309
SKLU1_LUNG	MT-ND4--MT-ND4L	3	33	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	14	0	0.72	1	0.0223	0.2456	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKLU1_LUNG	0.72	1	0.2679	FALSE	344	826	44	306	0	FALSE	ACH-000309
SKLU1_LUNG	MT-ND6--MT-TE	6	21	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0.1563	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKLU1_LUNG	1	1	0.2009	FALSE	499	1288	110	792	0	FALSE	ACH-000309
SKLU1_LUNG	HAUS6--DOCK8	11	0	HAUS6	12070	chr9:19076600:-	DOCK8	29453	chr9:271627:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0819	0	HAUS6->HAUS_augmin_like_complex_subunit_6,chr9:19053141-19103117:-,DOCK8->chr9:214854-465259:+,dedicator_of_cytokinesis_8	SKLU1_LUNG	1	1	0.0819	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	MT-CO1--MT-RNR2	9	8	MT-CO1	1642	chrM:6545:+	MT-RNR2	6082	chrM:2210:+	INCL_NON_REF_SPLICE	YES	13944	10140	0	0	0.067	0.0595	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0	0	0.1265	FALSE	44	51	6	21	0	FALSE	ACH-000309
SKLU1_LUNG	PLXDC1--TAF13	11	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0819	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SKLU1_LUNG	1	1	0.0819	TRUE	7	10	0	216	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	6	20	RN7SL3	1209	chr14:50320424:-	RN7SL2	4491	chr14:50329374:-	INCL_NON_REF_SPLICE	NO	0	167	1	0.13	0.0446	0.1488	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.13	1	0.1934	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	11	0	RN7SL3	1195	chr14:50320438:-	RN7SL2	4504	chr14:50329361:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0819	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0819	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	MT-ND4--MT-ND4L	3	31	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0223	0.2307	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKLU1_LUNG	0.97	1	0.253	FALSE	344	821	44	306	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	10	0	RN7SL3	1234	chr14:50320399:-	RN7SL2	4533	chr14:50329332:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0744	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0744	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	CTD-2328D6.1--MT-RNR2	4	23	CTD-2328D6.1	1324	chrX:108297469:-	MT-RNR2	4987	chrM:2225:+	INCL_NON_REF_SPLICE	YES	902	10513	0.03	0	0.0298	0.1711	CTD-2328D6.1->chrX:108297361-108297792:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0	0.03	0.2009	FALSE	0	3	0	1	0	FALSE	ACH-000309
SKLU1_LUNG	MT-ND6--MT-TE	3	26	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0223	0.1935	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKLU1_LUNG	0.97	1	0.2158	FALSE	499	1288	110	792	0	FALSE	ACH-000309
SKLU1_LUNG	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1530	0	0.01	1	0.067	0.0074	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0.01	1	0.0744	FALSE	13	9	0	364	0	FALSE	ACH-000309
SKLU1_LUNG	MT-ND6--MT-TE	9	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKLU1_LUNG	1	1	0.067	FALSE	499	1288	110	792	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	9	0	RN7SK	1268	chr6:52860685:+	RN7SKP185	4560	chr20:36603655:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.067	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	9	0	RN7SL3	1193	chr14:50320440:-	RN7SL2	4507	chr14:50329358:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.067	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	CTD-2328D6.1--MT-RNR2	7	7	CTD-2328D6.1	1422	chrX:108297371:-	MT-RNR2	5288	chrM:2526:+	INCL_NON_REF_SPLICE	YES	0	8151	1	0	0.0521	0.0521	CTD-2328D6.1->chrX:108297361-108297792:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0	1	0.1042	FALSE	0	3	0	1	0	FALSE	ACH-000309
SKLU1_LUNG	MT-ND4--MT-ND4L	8	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0595	0.0223	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKLU1_LUNG	1	1	0.0818	FALSE	344	821	44	306	0	FALSE	ACH-000309
SKLU1_LUNG	MT-ND6--MT-TE	4	19	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0298	0.1414	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKLU1_LUNG	0.96	1	0.1712	FALSE	499	1288	110	792	0	FALSE	ACH-000309
SKLU1_LUNG	MT-CO1--MT-RNR2	7	6	MT-CO1	1603	chrM:6506:+	MT-RNR2	5550	chrM:1678:+	INCL_NON_REF_SPLICE	YES	11598	0	0	1	0.0521	0.0446	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0	1	0.0967	FALSE	44	51	6	21	0	FALSE	ACH-000309
SKLU1_LUNG	MT-ND4--MT-ND4L	4	18	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	23	0	0.49	1	0.0298	0.1339	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKLU1_LUNG	0.49	1	0.1637	FALSE	344	827	44	306	0	FALSE	ACH-000309
SKLU1_LUNG	CTD-2328D6.1--MT-RNR2	3	21	CTD-2328D6.1	1351	chrX:108297442:-	MT-RNR2	5258	chrM:2496:+	INCL_NON_REF_SPLICE	YES	16	8715	0.6	0	0.0223	0.1563	CTD-2328D6.1->chrX:108297361-108297792:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0	0.6	0.1786	FALSE	0	3	0	1	0	FALSE	ACH-000309
SKLU1_LUNG	HSP90AB1--MT-RNR2	8	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1531	0	0.01	1	0.0595	0.0074	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0.01	1	0.0669	FALSE	13	9	0	364	0	FALSE	ACH-000309
SKLU1_LUNG	MT-CO1--MT-RNR2	5	12	MT-CO1	2212	chrM:7115:+	MT-RNR2	5550	chrM:1678:+	INCL_NON_REF_SPLICE	YES	12592	0	0	1	0.0372	0.0893	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0	1	0.1265	FALSE	44	51	6	21	0	FALSE	ACH-000309
SKLU1_LUNG	MT-CO1--MT-RNR2	6	8	MT-CO1	1653	chrM:6556:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	14273	0	0	1	0.0446	0.0595	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0	1	0.1041	FALSE	44	51	6	21	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	8	0	RN7SK	1267	chr6:52860684:+	RN7SKP185	4567	chr20:36603648:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0595	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.0595	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	8	0	RN7SL3	1216	chr14:50320417:-	RN7SL2	4510	chr14:50329355:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0595	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0595	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	MT-ND4--MT-ND4L	4	15	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.0298	0.1116	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKLU1_LUNG	0.86	1	0.1414	FALSE	344	826	44	306	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	7	0	RN7SK	1281	chr6:52860698:+	RN7SKP185	4561	chr20:36603654:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.0521	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	7	0	RN7SL3	1216	chr14:50320417:-	RN7SL2	4509	chr14:50329356:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0521	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	6	3	RN7SL3	1102	chr14:50320531:-	RN7SL2	4419	chr14:50329446:-	INCL_NON_REF_SPLICE	YES	1	603	0.9	0.01	0.0446	0.0223	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	0.01	0.9	0.0669	FALSE	0	45	4	1	45	FALSE	ACH-000309
SKLU1_LUNG	COQ2--LINC00616	6	2	COQ2	3735	chr4:84200101:-	LINC00616	22819	chr4:139012193:-	ONLY_REF_SPLICE	YES	31	0	0.21	1	0.0446	0.0149	COQ2->chr4:84182689-84206067:-,coenzyme_Q2,_polyprenyltransferase,LINC00616->chr4:138948576-139051863:-,long_intergenic_non-protein_coding_RNA_616	SKLU1_LUNG	0.21	1	0.0595	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	MT-ND4--MT-ND4L	6	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKLU1_LUNG	1	1	0.0446	FALSE	344	821	44	306	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	6	0	RN7SK	1263	chr6:52860680:+	RN7SKP185	4594	chr20:36603621:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.0446	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	6	0	RN7SL3	1284	chr14:50320349:-	RN7SL2	4509	chr14:50329356:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0446	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	ZNF654--HMGB2	6	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKLU1_LUNG	1	1	0.0446	TRUE	0	0	0	518	0	FALSE	ACH-000309
SKLU1_LUNG	MT-CO1--MT-RNR2	4	6	MT-CO1	1626	chrM:6529:+	MT-RNR2	6242	chrM:2370:+	INCL_NON_REF_SPLICE	YES	12722	11157	0	0	0.0298	0.0446	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0	0	0.0744	FALSE	44	51	6	21	0	FALSE	ACH-000309
SKLU1_LUNG	MT-ND4--MT-ND4L	5	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0372	0.0074	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKLU1_LUNG	0.86	1	0.0446	FALSE	344	821	44	306	0	FALSE	ACH-000309
SKLU1_LUNG	MT-ND6--MT-TE	3	9	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0223	0.067	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKLU1_LUNG	0.92	1	0.0893	FALSE	499	1288	110	792	0	FALSE	ACH-000309
SKLU1_LUNG	MT-TA--MT-TC	4	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0.0372	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKLU1_LUNG	1	1	0.067	FALSE	462	80	0	856	0	FALSE	ACH-000309
SKLU1_LUNG	CTD-2328D6.1--MT-RNR2	3	8	CTD-2328D6.1	1422	chrX:108297371:-	MT-RNR2	5285	chrM:2523:+	INCL_NON_REF_SPLICE	YES	0	8061	1	0	0.0223	0.0595	CTD-2328D6.1->chrX:108297361-108297792:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0	1	0.0818	FALSE	0	3	0	1	0	FALSE	ACH-000309
SKLU1_LUNG	MT-CO1--MT-RNR2	3	8	MT-CO1	1642	chrM:6545:+	MT-RNR2	5587	chrM:1715:+	INCL_NON_REF_SPLICE	YES	13944	0	0	1	0.0223	0.0595	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0	1	0.0818	FALSE	44	51	6	21	0	FALSE	ACH-000309
SKLU1_LUNG	MT-CO1--MT-RNR2	3	8	MT-CO1	1646	chrM:6549:+	MT-RNR2	6130	chrM:2258:+	INCL_NON_REF_SPLICE	YES	14171	10211	0	0	0.0223	0.0595	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0	0	0.0818	FALSE	44	51	6	21	0	FALSE	ACH-000309
SKLU1_LUNG	MT-ND4--MT-ND4L	4	4	MT-ND4	1031	chrM:10790:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.89	0.0298	0.0298	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKLU1_LUNG	0.89	1	0.0596	FALSE	344	821	44	306	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	5	0	RN7SK	1265	chr6:52860682:+	RN7SKP185	4557	chr20:36603658:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.0372	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	5	0	RN7SL3	1197	chr14:50320436:-	RN7SL2	4503	chr14:50329362:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0372	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RP11-96H19.1--RP11-446N19.1	5	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKLU1_LUNG	1	1	0.0372	FALSE	515	4851	409	746	0	FALSE	ACH-000309
SKLU1_LUNG	MT-ND4--MT-ND4L	3	7	MT-ND4	1008	chrM:10767:+	MT-ND4L	5567	chrM:10658:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0223	0.0521	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKLU1_LUNG	1	1	0.0744	FALSE	344	821	44	306	0	FALSE	ACH-000309
SKLU1_LUNG	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0.0074	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKLU1_LUNG	1	1	0.0372	FALSE	462	80	0	856	0	FALSE	ACH-000309
SKLU1_LUNG	MT-TA--MT-TC	3	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0223	0.0298	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKLU1_LUNG	1	1	0.0521	FALSE	462	80	0	856	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	4	0	RN7SL3	1187	chr14:50320446:-	RN7SL2	4503	chr14:50329362:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0298	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	3	RN7SL3	1053	chr14:50320580:-	RN7SL2	4351	chr14:50329514:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0223	0.0223	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0446	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	MT-CO1--MT-RNR2	3	2	MT-CO1	1446	chrM:6349:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	12375	0	0	1	0.0223	0.0149	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0	1	0.0372	FALSE	44	51	6	21	0	FALSE	ACH-000309
SKLU1_LUNG	CCND3--MOCS1	3	1	CCND3	2857	chr6:42016239:-	MOCS1	19003	chr6:39893589:-	ONLY_REF_SPLICE	YES	6	5	0.4	0.44	0.0223	0.0074	CCND3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:41902671-42018095:-,cyclin_D3,MOCS1->chr6:39867354-39902290:-,molybdenum_cofactor_synthesis_1	SKLU1_LUNG	0.4	0.44	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	CTD-2328D6.1--MT-RNR2	3	1	CTD-2328D6.1	1145	chrX:108297648:-	MT-RNR2	4469	chrM:1707:+	INCL_NON_REF_SPLICE	NO	1182	0	0	1	0.0223	0.0074	CTD-2328D6.1->chrX:108297361-108297792:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKLU1_LUNG	0	1	0.0297	FALSE	0	3	0	1	0	FALSE	ACH-000309
SKLU1_LUNG	AKR1C1--AKR1E2	3	0	AKR1C1	3369	chr10:4951798:+	AKR1E2	28363	chr10:4872867:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	DGD_PARALOGS,GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Brain=[count:3=pct:0.5],Blood=[count:1=pct:0.6]},HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[44542],AKR1C1->aldo-keto_reductase_family_1,_member_C1,chr10:4934796-5025475:+,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	SKLU1_LUNG	1	1	0.0223	TRUE	0	25	0	1	25	TRUE	ACH-000309
SKLU1_LUNG	CTSH--DDX11L1	3	0	CTSH	13931	chr15:79217676:-	DDX11L1	20134	chr1:12010:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	CTSH->Oncogene{Bushman},cathepsin_H,chr15:79213400-79241916:-,DDX11L1->DEAD/H-box_helicase_11_like_1,chr1:11869-14412:+	SKLU1_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0223	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKLU1_LUNG	1	1	0.0223	FALSE	499	1288	110	792	0	FALSE	ACH-000309
SKLU1_LUNG	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	SKLU1_LUNG	1	1	0.0223	TRUE	22	156	2	142	0	FALSE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	3	0	RN7SK	1208	chr6:52860625:+	RN7SKP185	4552	chr20:36603663:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0223	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.0223	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	RN7SK--RN7SKP185	3	0	RN7SK	1227	chr6:52860644:+	RN7SKP185	4557	chr20:36603658:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0223	0	RN7SK->RNA,_7SK_small_nuclear,chr6:52860418-52860748:+,RN7SKP185->RNA,_7SK_small_nuclear_pseudogene_185,chr20:36603558-36603883:-	SKLU1_LUNG	1	1	0.0223	TRUE	0	3	0	1	3	TRUE	ACH-000309
SKLU1_LUNG	RN7SL3--RN7SL2	3	0	RN7SL3	1290	chr14:50320343:-	RN7SL2	4516	chr14:50329349:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_FI:{Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},HGNC_GENEFAM,NUCLCLUST,LOCAL_REARRANGEMENT:-:[8639],RN7SL3->RNA,_7SL,_cytoplasmic_3,chr14:50320336-50320632:-,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	SKLU1_LUNG	1	1	0.0223	TRUE	0	45	4	1	45	TRUE	ACH-000309
SKLU1_LUNG	RP11-444D3.1--SOX5	3	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKLU1_LUNG	1	1	0.0223	TRUE	477	1352	189	275	0	FALSE	ACH-000309
SKLU1_LUNG	CCND3--MOCS1	2	1	CCND3	2857	chr6:42016239:-	MOCS1	17731	chr6:39895194:-	ONLY_REF_SPLICE	YES	6	13	0.33	0.19	0.0149	0.0074	CCND3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:41902671-42018095:-,cyclin_D3,MOCS1->chr6:39867354-39902290:-,molybdenum_cofactor_synthesis_1	SKLU1_LUNG	0.19	0.33	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	FASTKD3--LINC01019	2	1	FASTKD3	4140	chr5:7866011:-	LINC01019	12954	chr5:3531992:-	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0149	0.0074	FASTKD3->FAST_kinase_domains_3,chr5:7859272-7869150:-,LINC01019->chr5:3417266-3536208:-,long_intergenic_non-protein_coding_RNA_1019	SKLU1_LUNG	0.27	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	INTS5--C11orf48	2	1	INTS5	1133	chr11:62420642:-	C11orf48	14777	chr11:62430805:-	ONLY_REF_SPLICE	YES	0	160	1	0.02	0.0149	0.0074	NUCLCLUST,LOCAL_REARRANGEMENT:-:[9513],INTS5->chr11:62414320-62420774:-,integrator_complex_subunit_5,C11orf48->chr11:62430287-62439727:-	SKLU1_LUNG	0.02	1	0.0223	TRUE	0	1	0	1	1	FALSE	ACH-000309
SKLU1_LUNG	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0149	0.0074	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKLU1_LUNG	1	1	0.0223	FALSE	416	2512	207	587	0	FALSE	ACH-000309
SKLU1_LUNG	AKR1C1--AKR1E2	2	0	AKR1C1	2295	chr10:4950612:+	AKR1E2	28363	chr10:4872867:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0149	0	DGD_PARALOGS,GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Brain=[count:3=pct:0.5],Blood=[count:1=pct:0.6]},HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[44542],AKR1C1->aldo-keto_reductase_family_1,_member_C1,chr10:4934796-5025475:+,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	SKLU1_LUNG	1	1	0.0149	TRUE	0	18	0	1	18	TRUE	ACH-000309
SKLU1_LUNG	FAM208B--GPATCH8	2	0	FAM208B	1338	chr10:5727138:+	GPATCH8	47493	chr17:42483419:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0149	0	FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GPATCH8->G-patch_domain_containing_8,chr17:42472652-42580798:-	SKLU1_LUNG	1	1	0.0149	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	NRD1--TXNDC12	2	0	NRD1	31317	chr1:52257250:-	TXNDC12	38877	chr1:52507269:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0149	0	NRD1->chr1:52254863-52344477:-,TXNDC12->chr1:52485803-52521843:-,thioredoxin_domain_containing_12	SKLU1_LUNG	1	1	0.0149	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	PCGF2--FBXO47	2	0	PCGF2	2622	chr17:36904449:-	FBXO47	20078	chr17:37101389:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0149	0	PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2,FBXO47->F-box_protein_47,chr17:37092685-37123655:-	SKLU1_LUNG	1	1	0.0149	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	PIK3R1--PLK2	2	0	PIK3R1	13465	chr5:67588189:+	PLK2	27024	chr5:57754919:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0149	0	PIK3R1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:67511548-67597649:+,phosphoinositide-3-kinase_regulatory_subunit_1,PLK2->chr5:57749809-57756087:-,polo_like_kinase_2	SKLU1_LUNG	1	1	0.0149	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0149	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKLU1_LUNG	1	1	0.0149	TRUE	274	363	69	150	0	FALSE	ACH-000309
SKLU1_LUNG	SNHG6--MTCH2	2	0	SNHG6	1962	chr8:67837672:-	MTCH2	16111	chr11:47647293:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0149	0	SNHG6->chr8:67833919-67838633:-,small_nucleolar_RNA_host_gene_6,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	SKLU1_LUNG	1	1	0.0149	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	NKTR--CNOT8	1	1	NKTR	15451	chr3:42674315:+	CNOT8	34665	chr5:154242767:+	ONLY_REF_SPLICE	NO	17	14	0.11	0.12	0.0074	0.0074	NKTR->chr3:42642106-42690227:+,natural_killer_cell_triggering_receptor,CNOT8->CCR4-NOT_transcription_complex_subunit_8,chr5:154237113-154256353:+	SKLU1_LUNG	0.11	0.12	0.0148	TRUE	0	0	0	1	0	TRUE	ACH-000309
SKLU1_LUNG	TXNRD1--NFYB	1	1	TXNRD1	11664	chr12:104682818:+	NFYB	36515	chr12:104529310:-	ONLY_REF_SPLICE	NO	936	32	0	0.06	0.0074	0.0074	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:+:-:[77490],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	SKLU1_LUNG	0	0.06	0.0148	FALSE	0	0	0	6	0	FALSE	ACH-000309
CALU3_LUNG	MT-ND4--MT-ND4L	420	309	MT-ND4	2335	chrM:12094:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	4.2175	3.1029	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	1	1	7.3204	FALSE	263	700	35	281	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND6--MT-TE	93	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9339	0.0602	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU3_LUNG	1	1	0.9941	FALSE	499	1288	110	792	0	FALSE	ACH-000392
CALU3_LUNG	TIMM23B--LINC00843	82	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8234	0.1506	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CALU3_LUNG	1	1	0.974	TRUE	508	994	45	981	0	FALSE	ACH-000392
CALU3_LUNG	CDC6--KRT223P	72	49	CDC6	4518	chr17:38447920:+	KRT223P	15582	chr17:38877329:-	ONLY_REF_SPLICE	YES	647	0	0.16	1	0.723	0.492	CDC6->Oncogene{Bushman},cell_division_cycle_6,chr17:38443885-38459171:+,KRT223P->chr17:38873487-38878184:-,keratin_223_pseudogene	CALU3_LUNG	0.16	1	1.215	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	10	282	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	45	0	0.87	1	0.1004	2.8317	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.87	1	2.9321	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	10	278	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	28	2	0.91	0.99	0.1004	2.7916	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.91	0.99	2.892	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	CDC6--KRT223P	69	37	CDC6	4518	chr17:38447920:+	KRT223P	16883	chr17:38876028:-	ONLY_REF_SPLICE	YES	647	25	0.14	0.81	0.6929	0.3715	CDC6->Oncogene{Bushman},cell_division_cycle_6,chr17:38443885-38459171:+,KRT223P->chr17:38873487-38878184:-,keratin_223_pseudogene	CALU3_LUNG	0.14	0.81	1.0644	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	5	290	MT-ND4	1285	chrM:11044:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	71	0	0.81	1	0.0502	2.9121	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.81	1	2.9623	FALSE	344	827	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	6	282	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	47	0	0.86	1	0.0602	2.8317	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.86	1	2.8919	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	5	283	MT-ND4	1209	chrM:10968:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	47	0	0.86	1	0.0502	2.8418	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.86	1	2.892	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	5	279	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	NO	42	1	0.87	1	0.0502	2.8016	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.87	1	2.8518	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	4	277	MT-ND4	1147	chrM:10906:+	MT-ND4L	5504	chrM:10595:+	INCL_NON_REF_SPLICE	YES	27	0	0.91	1	0.0402	2.7815	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.91	1	2.8217	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	3	281	MT-ND4	1209	chrM:10968:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	47	1	0.86	1	0.0301	2.8217	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.86	1	2.8518	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	5	272	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	24	1	0.92	1	0.0502	2.7313	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.92	1	2.7815	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	3	270	MT-ND4	1114	chrM:10873:+	MT-ND4L	5509	chrM:10600:+	INCL_NON_REF_SPLICE	YES	17	0	0.94	1	0.0301	2.7112	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.94	1	2.7413	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	3	269	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	NO	17	0	0.94	1	0.0301	2.7012	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.94	1	2.7313	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	4	264	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	17	1	0.94	1	0.0402	2.651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.94	1	2.6912	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	18	202	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	12	1	0.95	1	0.1807	2.0284	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.95	1	2.2091	FALSE	344	821	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	8	226	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	12	1	0.95	1	0.0803	2.2694	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.95	1	2.3497	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	11	186	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	47	1	0.81	0.99	0.1105	1.8677	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.81	0.99	1.9782	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	8	190	MT-ND4	1285	chrM:11044:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	71	1	0.74	0.99	0.0803	1.9079	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.74	0.99	1.9882	FALSE	344	827	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	5	190	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	17	1	0.92	0.99	0.0502	1.9079	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.92	0.99	1.9581	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	TIMM23--RP11-464F9.1	52	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	167	3	0.24	0.95	0.5222	0.01	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CALU3_LUNG	0.24	0.95	0.5322	TRUE	519	3926	326	965	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND6--MT-TE	48	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.482	0.0602	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU3_LUNG	0.98	1	0.5422	FALSE	499	1288	110	792	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	3	185	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	17	1	0.92	0.99	0.0301	1.8577	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.92	0.99	1.8878	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	34	59	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	880	1	0.1	0.99	0.3414	0.5925	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.1	0.99	0.9339	FALSE	344	827	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	3	183	MT-ND4	1164	chrM:10923:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	36	1	0.84	0.99	0.0301	1.8376	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.84	0.99	1.8677	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	4	177	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	99	1	0.65	0.99	0.0402	1.7774	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.65	0.99	1.8176	FALSE	344	827	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND1--MT-RNR2	47	4	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	NO	49	89	0.51	0.36	0.472	0.0402	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CALU3_LUNG	0.36	0.51	0.5122	FALSE	92	22	4	61	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	3	177	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	80	1	0.69	0.99	0.0301	1.7774	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.69	0.99	1.8075	FALSE	344	827	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND6--MT-TE	39	27	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	8	0	0.89	1	0.3916	0.2711	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU3_LUNG	0.89	1	0.6627	FALSE	499	1288	110	792	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	29	61	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	18392	1	0	0.99	0.2912	0.6125	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0	0.99	0.9037	FALSE	328	800	43	304	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	10	130	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	36	1	0.8	0.99	0.1004	1.3054	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.8	0.99	1.4058	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-TA--MT-TC	38	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3816	0.0402	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CALU3_LUNG	1	1	0.4218	FALSE	462	80	0	856	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	3	140	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	25	1	0.85	0.99	0.0301	1.4058	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.85	0.99	1.4359	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	21	36	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	49	1	0.54	0.98	0.2109	0.3615	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.54	0.98	0.5724	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	HSP90AB1--MT-RNR2	27	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3720	0	0.01	1	0.2711	0.0201	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CALU3_LUNG	0.01	1	0.2912	FALSE	13	9	0	364	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND6--MT-TE	16	36	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	9	0	0.85	1	0.1607	0.3615	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU3_LUNG	0.85	1	0.5222	FALSE	499	1288	110	792	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	3	86	MT-ND4	1073	chrM:10832:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	12	1	0.88	0.99	0.0301	0.8636	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.88	0.99	0.8937	FALSE	344	821	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	10	57	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	66	1	0.5	0.99	0.1004	0.5724	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.5	0.99	0.6728	FALSE	344	827	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	3	78	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	11	1	0.88	0.99	0.0301	0.7832	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.88	0.99	0.8133	FALSE	344	821	44	306	0	FALSE	ACH-000392
CALU3_LUNG	SRPK2--RP13-444H2.1	21	4	SRPK2	9685	chr7:104844075:-	RP13-444H2.1	31996	chr13:52915028:+	ONLY_REF_SPLICE	YES	8	0	0.76	1	0.2109	0.0402	SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,RP13-444H2.1->chr13:52908430-52916031:+	CALU3_LUNG	0.76	1	0.2511	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	5	65	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	7	0	0.91	1	0.0502	0.6527	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.91	1	0.7029	FALSE	344	821	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	7	54	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	43	1	0.59	0.98	0.0703	0.5422	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.59	0.98	0.6125	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	10	38	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	524	1	0.08	0.98	0.1004	0.3816	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.08	0.98	0.482	FALSE	344	827	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND1--MT-RNR2	7	49	MT-ND1	1264	chrM:3570:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	16	0	0.78	1	0.0703	0.492	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CALU3_LUNG	0.78	1	0.5623	FALSE	114	26	4	85	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND6--MT-TE	14	21	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.1406	0.2109	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU3_LUNG	0.95	1	0.3515	FALSE	499	1288	110	792	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	5	54	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	46	1	0.56	0.98	0.0502	0.5422	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.56	0.98	0.5924	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	3	61	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	14406	1	0	0.98	0.0301	0.6125	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0	0.98	0.6426	FALSE	344	827	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	8	38	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	71	1	0.39	0.98	0.0803	0.3816	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.39	0.98	0.4619	FALSE	344	827	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND1--MT-RNR2	5	49	MT-ND1	1264	chrM:3570:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	16	0	0.77	1	0.0502	0.492	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CALU3_LUNG	0.77	1	0.5422	FALSE	114	26	4	85	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	6	45	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	12	1	0.81	0.98	0.0602	0.4519	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.81	0.98	0.5121	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	4	53	MT-ND4	1144	chrM:10903:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	24	1	0.7	0.98	0.0402	0.5322	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.7	0.98	0.5724	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	8	36	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	47	1	0.48	0.98	0.0803	0.3615	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.48	0.98	0.4418	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND6--MT-TE	3	56	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0.5623	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU3_LUNG	1	1	0.5924	FALSE	499	1288	110	792	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND1--MT-RNR2	4	49	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	16	0	0.77	1	0.0402	0.492	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CALU3_LUNG	0.77	1	0.5322	FALSE	114	26	4	85	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND1--MT-RNR2	14	8	MT-ND1	1297	chrM:3603:+	MT-RNR2	5502	chrM:2216:+	INCL_NON_REF_SPLICE	YES	20	13218	0.52	0	0.1406	0.0803	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CALU3_LUNG	0	0.52	0.2209	FALSE	120	26	5	87	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	7	35	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	36	1	0.54	0.98	0.0703	0.3515	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.54	0.98	0.4218	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	PPARD--HCG20	15	3	PPARD	4535	chr6:35378994:+	HCG20	17372	chr6:30756468:+	ONLY_REF_SPLICE	YES	14	0	0.56	1	0.1506	0.0301	PPARD->Oncogene{Bushman},chr6:35310335-35395968:+,peroxisome_proliferator_activated_receptor_delta,HCG20->HLA_complex_group_20_(non-protein_coding),chr6:30734602-30760027:+	CALU3_LUNG	0.56	1	0.1807	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	HSP90AB1--MT-RNR2	15	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3750	0	0	1	0.1506	0.0201	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CALU3_LUNG	0	1	0.1707	FALSE	13	9	0	364	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	8	29	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	45	1	0.45	0.97	0.0803	0.2912	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.45	0.97	0.3715	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-TA--MT-TC	14	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1406	0.0502	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CALU3_LUNG	1	1	0.1908	FALSE	462	80	0	856	0	FALSE	ACH-000392
CALU3_LUNG	RP11-319G9.5--WWOX	14	2	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	16	1	0.5	0.1406	0.0201	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	CALU3_LUNG	0.5	1	0.1607	FALSE	154	425	28	76	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	4	39	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	10	1	0.81	0.98	0.0402	0.3916	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.81	0.98	0.4318	FALSE	344	821	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	4	37	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	70	1	0.37	0.98	0.0402	0.3715	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.37	0.98	0.4117	FALSE	344	827	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	3	40	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	43	1	0.5	0.98	0.0301	0.4017	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.5	0.98	0.4318	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND6--MT-TE	4	36	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	9	0	0.82	1	0.0402	0.3615	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU3_LUNG	0.82	1	0.4017	FALSE	499	1288	110	792	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	4	35	MT-ND4	1114	chrM:10873:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	17	1	0.7	0.97	0.0402	0.3515	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.7	0.97	0.3917	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND6--MT-TE	6	27	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	8	0	0.8	1	0.0602	0.2711	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU3_LUNG	0.8	1	0.3313	FALSE	499	1288	110	792	0	FALSE	ACH-000392
CALU3_LUNG	RP11-123O10.4--GRIP1	12	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1205	0.0201	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CALU3_LUNG	1	1	0.1406	FALSE	416	2512	207	587	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	10	6	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1004	0.0602	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.94	1	0.1606	FALSE	344	821	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND5--MT-ND6	9	7	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	5088	1	0	0.0904	0.0703	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	CALU3_LUNG	0	1	0.1607	FALSE	26	124	4	93	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND6--MT-TE	3	31	MT-ND6	1159	chrM:14515:-	MT-TE	4559	chrM:14709:-	INCL_NON_REF_SPLICE	YES	7	0	0.83	1	0.0301	0.3113	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU3_LUNG	0.83	1	0.3414	FALSE	499	1288	110	792	0	FALSE	ACH-000392
CALU3_LUNG	RP11-114H23.1--RP11-114H23.2	9	7	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.0904	0.0703	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CALU3_LUNG	0.89	1	0.1607	FALSE	81	155	12	160	0	FALSE	ACH-000392
CALU3_LUNG	MAP3K13--MSL2	10	1	MAP3K13	6236	chr3:185046750:+	MSL2	37433	chr3:135871580:-	ONLY_REF_SPLICE	YES	2	56	0.85	0.16	0.1004	0.01	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila)	CALU3_LUNG	0.16	0.85	0.1104	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	6	17	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	46	1	0.33	0.96	0.0602	0.1707	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.33	0.96	0.2309	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND3--MT-ATP8	10	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1004	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CALU3_LUNG	1	1	0.1004	FALSE	351	233	23	137	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND6--MT-TE	10	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1004	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU3_LUNG	1	1	0.1004	FALSE	499	1288	110	792	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND6--MT-TE	3	27	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	5	0	0.86	1	0.0301	0.2711	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU3_LUNG	0.86	1	0.3012	FALSE	499	1288	110	792	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND6--MT-TE	3	27	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	9	0	0.77	1	0.0301	0.2711	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU3_LUNG	0.77	1	0.3012	FALSE	499	1288	110	792	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	4	22	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	12	1	0.68	0.96	0.0402	0.2209	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.68	0.96	0.2611	FALSE	344	826	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND5--MT-ND6	7	8	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.94	0.0703	0.0803	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	CALU3_LUNG	0.94	1	0.1506	FALSE	26	124	4	93	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND6--MT-TE	9	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0904	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU3_LUNG	1	1	0.0904	FALSE	499	1288	110	792	0	FALSE	ACH-000392
CALU3_LUNG	NRIP1--AF127936.7	8	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.0803	0.0301	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CALU3_LUNG	0.79	1	0.1104	FALSE	292	1546	117	613	0	FALSE	ACH-000392
CALU3_LUNG	MT-TA--MT-TC	8	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0.0201	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CALU3_LUNG	1	1	0.1004	FALSE	462	80	0	856	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND6--MT-TE	8	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU3_LUNG	1	1	0.0803	FALSE	499	1288	110	792	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND6--MT-TE	8	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU3_LUNG	1	1	0.0803	FALSE	499	1288	110	792	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND6--MT-TE	8	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU3_LUNG	1	1	0.0803	FALSE	499	1288	110	792	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND5--MT-CO3	7	3	MT-ND5	2591	chrM:13927:+	MT-CO3	6171	chrM:9565:+	INCL_NON_REF_SPLICE	YES	4411	19486	0	0	0.0703	0.0301	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CALU3_LUNG	0	0	0.1004	FALSE	0	15	2	18	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND1--MT-RNR2	6	6	MT-ND1	1726	chrM:4032:+	MT-RNR2	5683	chrM:2397:+	INCL_NON_REF_SPLICE	YES	735	13253	0.02	0	0.0602	0.0602	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CALU3_LUNG	0	0.02	0.1204	FALSE	120	26	5	87	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	3	18	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	71	1	0.23	0.95	0.0301	0.1807	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.23	0.95	0.2108	FALSE	344	827	44	306	0	FALSE	ACH-000392
CALU3_LUNG	ZBTB11-AS1--RP11-221J22.1	6	5	ZBTB11-AS1	1843	chr3:101396116:+	RP11-221J22.1	9057	chr3:101713405:+	INCL_NON_REF_SPLICE	YES	16	0	0.41	1	0.0602	0.0502	ZBTB11-AS1->ZBTB11_antisense_RNA_1,chr3:101395274-101398061:+,RP11-221J22.1->chr3:101659703-101716770:+	CALU3_LUNG	0.41	1	0.1104	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	7	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	1	1	0.0703	FALSE	344	821	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	7	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	1	1	0.0703	FALSE	344	821	44	306	0	FALSE	ACH-000392
CALU3_LUNG	TATDN1--RP11-103H7.1	5	8	TATDN1	9771	chr8:125520715:-	RP11-103H7.1	19682	chr8:127499792:+	ONLY_REF_SPLICE	YES	108	0	0.11	1	0.0502	0.0803	TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,RP11-103H7.1->chr8:127486434-127504841:+	CALU3_LUNG	0.11	1	0.1305	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	MT-ND1--MT-RNR2	5	7	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	16	12464	0.43	0	0.0502	0.0703	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CALU3_LUNG	0	0.43	0.1205	FALSE	120	26	5	87	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND1--MT-RNR2	3	15	MT-ND1	1272	chrM:3578:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	YES	18	0	0.5	1	0.0301	0.1506	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CALU3_LUNG	0.5	1	0.1807	FALSE	114	26	4	85	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND6--MT-TE	4	11	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	8	0	0.65	1	0.0402	0.1105	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU3_LUNG	0.65	1	0.1507	FALSE	499	1288	110	792	0	FALSE	ACH-000392
CALU3_LUNG	MT-TA--MT-TC	5	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0502	0.0703	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CALU3_LUNG	1	1	0.1205	FALSE	462	80	0	856	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND5--MT-CO3	3	14	MT-ND5	2621	chrM:13957:+	MT-CO3	5949	chrM:9343:+	INCL_NON_REF_SPLICE	YES	3776	7130	0	0	0.0301	0.1406	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CALU3_LUNG	0	0	0.1707	FALSE	0	15	2	18	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND1--MT-RNR2	4	8	MT-ND1	1323	chrM:3629:+	MT-RNR2	5476	chrM:2190:+	INCL_NON_REF_SPLICE	YES	27	12579	0.31	0	0.0402	0.0803	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CALU3_LUNG	0	0.31	0.1205	FALSE	119	26	5	86	0	FALSE	ACH-000392
CALU3_LUNG	REV3L--RPL28	6	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0602	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CALU3_LUNG	1	1	0.0602	TRUE	22	156	2	142	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND1--MT-RNR2	3	11	MT-ND1	1303	chrM:3609:+	MT-RNR2	5007	chrM:1721:+	INCL_NON_REF_SPLICE	YES	23	0	0.38	1	0.0301	0.1105	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CALU3_LUNG	0.38	1	0.1406	FALSE	114	26	4	85	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND5--MT-CO3	4	7	MT-ND5	2730	chrM:14066:+	MT-CO3	6178	chrM:9572:+	INCL_NON_REF_SPLICE	YES	6	19241	0.65	0	0.0402	0.0703	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CALU3_LUNG	0	0.65	0.1105	FALSE	0	15	2	17	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0502	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	1	1	0.0502	FALSE	344	821	44	306	0	FALSE	ACH-000392
CALU3_LUNG	RP11-96H19.1--RP11-446N19.1	5	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0502	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CALU3_LUNG	1	1	0.0502	FALSE	515	4851	409	746	0	FALSE	ACH-000392
CALU3_LUNG	MAP3K13--MSL2	4	1	MAP3K13	2430	chr3:185003431:+	MSL2	37433	chr3:135871580:-	ONLY_REF_SPLICE	YES	140	56	0.03	0.08	0.0402	0.01	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila)	CALU3_LUNG	0.03	0.08	0.0502	TRUE	0	0	0	1	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	4	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	10	1	0.33	0.83	0.0402	0.01	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	0.33	0.83	0.0502	FALSE	344	821	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND5--MT-CO3	3	5	MT-ND5	2805	chrM:14141:+	MT-CO3	6211	chrM:9605:+	INCL_NON_REF_SPLICE	YES	0	18730	1	0	0.0301	0.0502	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CALU3_LUNG	0	1	0.0803	FALSE	0	15	2	17	0	FALSE	ACH-000392
CALU3_LUNG	MAP3K13--MSL2	3	4	MAP3K13	7786	chr3:185081156:+	MSL2	37433	chr3:135871580:-	ONLY_REF_SPLICE	YES	2	56	0.78	0.11	0.0301	0.0402	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila)	CALU3_LUNG	0.11	0.78	0.0703	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	MT-ND3--MT-ATP8	3	2	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	102	29	0.05	0.15	0.0301	0.0201	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CALU3_LUNG	0.05	0.15	0.0502	FALSE	351	233	23	137	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND3--MT-ATP8	3	2	MT-ND3	1241	chrM:10299:+	MT-ATP8	4419	chrM:8438:+	INCL_NON_REF_SPLICE	YES	542	0	0.01	1	0.0301	0.0201	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CALU3_LUNG	0.01	1	0.0502	FALSE	351	233	23	137	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND5--MT-CO3	3	2	MT-ND5	1643	chrM:12979:+	MT-CO3	5949	chrM:9343:+	INCL_NON_REF_SPLICE	YES	6419	7130	0	0	0.0301	0.0201	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CALU3_LUNG	0	0	0.0502	FALSE	0	12	0	17	0	FALSE	ACH-000392
CALU3_LUNG	NRG3--RP11-202D18.2	3	1	NRG3	1850	chr10:83635919:+	RP11-202D18.2	25568	chr10:83985281:-	ONLY_REF_SPLICE	YES	9	1	0.31	0.8	0.0301	0.01	NEIGHBORS_OVERLAP:+:-:[4966],NRG3->chr10:83635070-84746935:+,neuregulin_3,RP11-202D18.2->chr10:83983969-83988935:-	CALU3_LUNG	0.31	0.8	0.0401	FALSE	0	0	0	1	0	FALSE	ACH-000392
CALU3_LUNG	NRG3--RP11-202D18.2	3	1	NRG3	1850	chr10:83635919:+	RP11-202D18.2	26695	chr10:83984115:-	ONLY_REF_SPLICE	YES	9	0	0.31	1	0.0301	0.01	NEIGHBORS_OVERLAP:+:-:[4966],NRG3->chr10:83635070-84746935:+,neuregulin_3,RP11-202D18.2->chr10:83983969-83988935:-	CALU3_LUNG	0.31	1	0.0401	FALSE	0	0	0	1	0	FALSE	ACH-000392
CALU3_LUNG	ERBB2--MYL6	3	0	ERBB2	16192	chr17:37872192:+	MYL6	33396	chr12:56555171:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	CALU3_LUNG	1	1	0.0301	TRUE	0	3	0	1	1	TRUE	ACH-000392
CALU3_LUNG	ERBB2--STARD3	3	0	ERBB2	16192	chr17:37872192:+	STARD3	39973	chr17:37818504:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	LOCAL_REARRANGEMENT:+:[24430],ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+	CALU3_LUNG	1	1	0.0301	TRUE	0	1	0	1	0	TRUE	ACH-000392
CALU3_LUNG	MT-ND3--MT-ATP8	3	0	MT-ND3	1060	chrM:10118:+	MT-ATP8	4489	chrM:8508:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CALU3_LUNG	1	1	0.0301	FALSE	351	233	23	137	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1047	chrM:10806:+	MT-ND4L	5653	chrM:10744:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	1	1	0.0301	FALSE	344	821	44	306	0	FALSE	ACH-000392
CALU3_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU3_LUNG	1	1	0.0301	FALSE	344	821	44	306	0	FALSE	ACH-000392
CALU3_LUNG	NRIP1--AF127936.7	2	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.33	1	0.0201	0.0402	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CALU3_LUNG	0.33	1	0.0603	FALSE	125	705	46	456	0	FALSE	ACH-000392
CALU3_LUNG	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0.0301	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CALU3_LUNG	1	1	0.0502	FALSE	275	511	55	178	0	FALSE	ACH-000392
CALU3_LUNG	NRIP1--AF127936.7	1	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.01	0.0502	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CALU3_LUNG	0.3	1	0.0602	FALSE	164	806	69	479	0	FALSE	ACH-000392
CALU3_LUNG	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0.01	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CALU3_LUNG	1	1	0.0301	FALSE	93	270	15	244	0	FALSE	ACH-000392
CALU3_LUNG	CD2AP--AQP9	2	0	CD2AP	4876	chr6:47512442:+	AQP9	29797	chr15:58458872:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CD2AP->CD2-associated_protein,chr6:47445525-47594999:+,AQP9->aquaporin_9,chr15:58430368-58478110:+	CALU3_LUNG	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	MB21D2--FGF12	2	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	CALU3_LUNG	1	1	0.0201	FALSE	0	17	0	46	0	FALSE	ACH-000392
CALU3_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.01	0.0301	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CALU3_LUNG	1	1	0.0401	FALSE	407	2205	196	549	0	FALSE	ACH-000392
CALU3_LUNG	BCL7A--E2F8	1	1	BCL7A	7109	chr12:122481959:+	E2F8	25329	chr11:19247411:-	ONLY_REF_SPLICE	YES	11	25	0.15	0.07	0.01	0.01	BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+,E2F8->E2F_transcription_factor_8,chr11:19245610-19263167:-	CALU3_LUNG	0.07	0.15	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	IGF2BP2--TRA2B	1	1	IGF2BP2	1274	chr3:185542571:-	TRA2B	33930	chr3:185644522:-	ONLY_REF_SPLICE	YES	107	483	0.02	0	0.01	0.01	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	CALU3_LUNG	0	0.02	0.02	FALSE	0	0	0	2	0	FALSE	ACH-000392
CALU3_LUNG	PSD3--SH2D4A	1	1	PSD3	5897	chr8:18793544:-	SH2D4A	48235	chr8:19190466:+	ONLY_REF_SPLICE	YES	1	34	0.67	0.06	0.01	0.01	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,SH2D4A->SH2_domain_containing_4A,chr8:19171128-19253729:+	CALU3_LUNG	0.06	0.67	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000392
CALU3_LUNG	RP11-33B1.1--XPO1	1	1	RP11-33B1.1	6411	chr4:120384134:+	XPO1	29180	chr2:61761038:-	ONLY_REF_SPLICE	NO	9	88	0.18	0.02	0.01	0.01	RP11-33B1.1->chr4:120375946-120473180:+,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	CALU3_LUNG	0.02	0.18	0.02	TRUE	0	0	0	1	0	FALSE	ACH-000392
CALU3_LUNG	SULT1A1--PSMA7	1	1	SULT1A1	9555	chr16:28619612:-	PSMA7	17231	chr20:60716000:-	ONLY_REF_SPLICE	YES	14	1702	0.12	0	0.01	0.01	SULT1A1->chr16:28616903-28634946:-,sulfotransferase_family_1A_member_1,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	CALU3_LUNG	0	0.12	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000392
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV6--TRAJ3	257	29	TRAV6	1563	chr14:22237291:+	TRAJ3	4600	chr14:23012129:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.7213	0.3071	HGNC_GENEFAM,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+,TRAJ3->T_cell_receptor_alpha_joining_3,chr14:23012122-23012183:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	3.0284	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV8-4--TRAJ3	224	34	TRAV8-4	1602	chr14:22363214:+	TRAJ3	4608	chr14:23012131:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.3719	0.36	HGNC_GENEFAM,TRAV8-4->T_cell_receptor_alpha_variable_8-4,chr14:22362613-22363210:+,TRAJ3->T_cell_receptor_alpha_joining_3,chr14:23012122-23012183:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.7319	TRUE	0	1	0	1	1	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	172	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.98	1.8213	0.3494	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	2.1707	TRUE	508	994	45	981	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	137	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4507	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.4507	TRUE	0	0	0	518	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	97	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	74	1	0.57	0.99	1.0271	0.0106	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	0.99	1.0377	TRUE	519	3926	326	965	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544L4.1--TBC1D7	71	14	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5177	chr6:13328750:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7518	0.1482	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9	TRUE	0	0	0	5	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544L4.1--TBC1D7	60	14	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5183	chr6:13328744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6353	0.1482	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7835	TRUE	0	0	0	5	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544L4.1--TBC1D7	60	13	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5189	chr6:13328738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6353	0.1377	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.773	TRUE	0	0	0	5	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	18	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1906	0.0106	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2012	FALSE	416	2512	207	587	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	17	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	6	0.91	0.77	0.18	0.0318	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.91	0.2118	FALSE	16	356	14	466	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OR51S1--TP53I11	14	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1482	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1482	TRUE	402	216	10	229	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBS1L--RP11-707M1.1	11	6	HBS1L	5766	chr6:135360711:-	RP11-707M1.1	37218	chr11:49805375:+	ONLY_REF_SPLICE	YES	83	0	0.17	1	0.1165	0.0635	HBS1L->HBS1_like_translational_GTPase,chr6:135281516-135424194:-,RP11-707M1.1->chr11:49580098-49831971:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.18	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	12	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	37	0	0.27	1	0.1271	0.0212	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.1483	FALSE	272	151	14	158	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-565E6.1--HYDIN	11	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1165	0.0424	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1589	TRUE	456	1387	91	133	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	9	11	AC104820.2	16783	chr2:182227645:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	9	592	0.69	0.03	0.0953	0.1165	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.69	0.2118	FALSE	0	0	0	16	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-662B19.2--WDR37	11	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1165	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1165	TRUE	31	42	1	25	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	10	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.1059	0.0106	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1165	FALSE	292	1546	117	613	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	8	6	AC104820.2	8902	chr2:182127704:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	21	452	0.4	0.03	0.0847	0.0635	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.4	0.1482	FALSE	0	0	0	11	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	9	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0953	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0953	TRUE	477	1352	189	275	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0635	0.0847	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1482	FALSE	499	1288	110	792	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0741	0.0318	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1059	FALSE	499	1288	110	792	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	5	10	AC104820.2	8902	chr2:182127704:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	21	592	0.42	0.02	0.0529	0.1059	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.42	0.1588	FALSE	0	0	0	3	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--UBB	7	0	RPS3	2292	chr11:75111821:+	UBB	14087	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0741	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,UBB->chr17:16284112-16286059:+,ubiquitin_B	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0741	TRUE	0	0	0	6	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	5	4	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	11	452	0.45	0.02	0.0529	0.0424	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.45	0.0953	FALSE	0	1	0	18	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	4	7	AC104820.2	6553	chr2:182091262:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	11	592	0.5	0.02	0.0424	0.0741	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.5	0.1165	FALSE	0	0	0	11	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	4	4	AC104820.2	6557	chr2:182091266:+	ITGA4	25155	chr2:182339687:+	INCL_NON_REF_SPLICE	YES	19	452	0.3	0.02	0.0424	0.0424	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.3	0.0848	FALSE	0	1	0	18	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	25	25	0.22	0.22	0.0424	0.0318	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.22	0.0742	TRUE	267	562	48	632	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	3	6	AC104820.2	16783	chr2:182227645:+	ITGA4	22959	chr2:182322923:+	ONLY_REF_SPLICE	YES	9	659	0.5	0.01	0.0318	0.0635	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.5	0.0953	FALSE	0	0	0	16	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	4	0	AC104820.2	4356	chr2:181988707:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0424	FALSE	0	0	0	3	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0424	FALSE	499	1288	110	792	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	4	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	4	6	0.64	0.54	0.0318	0.0424	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.64	0.0742	FALSE	0	9	0	55	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0.0318	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0636	FALSE	499	1288	110	792	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0318	0.0106	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0424	FALSE	515	4851	409	746	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--CREBZF	3	1	ZNF738	7035	chr19:21558766:+	CREBZF	16067	chr11:85374645:-	ONLY_REF_SPLICE	YES	195	291	0.02	0.01	0.0318	0.0106	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CREBZF->CREB/ATF_bZIP_transcription_factor,chr11:85370752-85393951:-	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0424	FALSE	0	0	0	1	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GATS--PILRB	3	0	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	TRUE	57	41	2	35	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	TRUE	22	156	2	142	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF519--ANKRD20A5P	3	0	ZNF519	1216	chr18:14132274:-	ANKRD20A5P	46156	chr18:14234686:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	LOCAL_INVERSION:-:+:[46607],ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,ANKRD20A5P->ankyrin_repeat_domain_20_family_member_A5,_pseudogene,chr18:14179096-14249455:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	6	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	9	452	0.44	0.02	0.0106	0.0635	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.44	0.0741	FALSE	0	0	0	19	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--CREBZF	2	1	CHD2	6529	chr15:93444529:+	CREBZF	62543	chr11:85374645:-	ONLY_REF_SPLICE	YES	111	291	0.03	0.01	0.0212	0.0106	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,CREBZF->CREB/ATF_bZIP_transcription_factor,chr11:85370752-85393951:-	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0318	FALSE	0	0	0	1	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PEX1--CDK6	2	1	PEX1	5172	chr7:92146590:-	CDK6	32449	chr7:92404145:-	ONLY_REF_SPLICE	YES	50	265	0.06	0.01	0.0212	0.0106	LOCAL_REARRANGEMENT:-:[76390],PEX1->chr7:92116334-92157845:-,peroxisomal_biogenesis_factor_1,CDK6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:92234235-92465908:-,cyclin-dependent_kinase_6	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.0318	FALSE	0	0	0	1	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--SH3PXD2A	2	1	RPS3	2292	chr11:75111821:+	SH3PXD2A	24092	chr10:105420872:-	ONLY_REF_SPLICE	YES	2633	2	0	0.6	0.0212	0.0106	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,SH3PXD2A->SH3_and_PX_domains_2A,chr10:105348285-105615301:-	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.6	0.0318	FALSE	0	0	0	1	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	YES	37	0	0.07	1	0.0212	0.0106	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0318	FALSE	28	14	1	23	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC009403.2--CROT	2	0	AC009403.2	2738	chr7:155436162:-	CROT	21250	chr7:87020905:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	AC009403.2->chr7:155403925-155437899:-,CROT->carnitine_O-octanoyltransferase,chr7:86974997-87029111:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	4	AC104820.2	7753	chr2:182103177:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	22	452	0.19	0.01	0.0106	0.0424	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.19	0.053	FALSE	0	0	0	3	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000320.7--RUNX1	2	0	AP000320.7	1154	chr21:35446045:+	RUNX1	34483	chr21:36259393:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	AP000320.7->chr21:35445892-35732332:+,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--FAM120AOS	2	0	CHD2	6529	chr15:93444529:+	FAM120AOS	62843	chr9:96212881:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx&tcga_normals:1/3694=0.03%,CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,FAM120AOS->chr9:96208776-96215874:-,family_with_sequence_similarity_120A_opposite_strand	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	2	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPA2B1--IVNS1ABP	2	0	HNRNPA2B1	1958	chr7:26240192:-	IVNS1ABP	21060	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	4	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLEKHB2--TXNL4A	2	0	PLEKHB2	1552	chr2:131862971:+	TXNL4A	28943	chr18:77737701:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	PLEKHB2->chr2:131862420-132111282:+,pleckstrin_homology_domain_containing_B2,TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--STAT5B	2	0	RCC1	2920	chr1:28835417:+	STAT5B	27276	chr17:40369482:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCCD1--SON	2	0	RCCD1	6879	chr15:91505004:+	SON	23594	chr21:34931536:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	RCCD1->RCC1_domain_containing_1,chr15:91498100-91506349:+,SON->SON_DNA_binding_protein,chr21:34914924-34949812:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	FALSE	93	270	15	244	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP13-941N14.1--HNRNPH3	2	0	RP13-941N14.1	1472	chr12:122019168:+	HNRNPH3	11357	chr10:70100931:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	RP13-941N14.1->chr12:122018697-122031409:+,HNRNPH3->chr10:70090931-70102948:+,heterogeneous_nuclear_ribonucleoprotein_H3	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	2	0	TIMM23	4782	chr10:51612904:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	4	2	0	9	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--KIAA1033	2	0	UPF3A	5319	chr13:115057267:+	KIAA1033	26293	chr12:105534072:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,KIAA1033->KIAA1033,chr12:105501102-105562912:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--MICU2	2	0	ZNF738	7035	chr19:21558766:+	MICU2	27459	chr13:22069457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,MICU2->chr13:22066836-22178353:-,mitochondrial_calcium_uptake_2	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	2	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF85--SRSF7	2	0	ZNF85	3219	chr19:21117853:+	SRSF7	18172	chr2:38975795:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	ZNF85->chr19:21106028-21133503:+,zinc_finger_protein_85,SRSF7->chr2:38970741-38978636:-,serine/arginine-rich_splicing_factor_7	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	2	5	0.67	0.44	0.0106	0.0318	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.67	0.0424	FALSE	0	23	1	67	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0.0212	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	FALSE	467	2173	244	435	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	24436	chr10:114650725:+	ONLY_REF_SPLICE	YES	37	0	0.07	1	0.0106	0.0212	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0318	FALSE	21	3	0	16	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF519--ANKRD20A5P	1	2	ZNF519	2343	chr18:14124349:-	ANKRD20A5P	43893	chr18:14227610:+	ONLY_REF_SPLICE	YES	81	37	0.04	0.07	0.0106	0.0212	LOCAL_INVERSION:-:+:[46607],ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,ANKRD20A5P->ankyrin_repeat_domain_20_family_member_A5,_pseudogene,chr18:14179096-14249455:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.07	0.0318	TRUE	0	0	0	1	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--SRSF7	1	1	CPSF6	11046	chr12:69656342:+	SRSF7	22735	chr2:38975795:-	ONLY_REF_SPLICE	NO	162	342	0.01	0.01	0.0106	0.0106	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2]},HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF7->chr2:38970741-38978636:-,serine/arginine-rich_splicing_factor_7	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0212	FALSE	1	0	0	1	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR2--DHX34	1	1	GLTSCR2	1262	chr19:48249040:+	DHX34	29491	chr19:47885237:+	ONLY_REF_SPLICE	YES	1795	10	0	0.17	0.0106	0.0106	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:2=pct:3.8],Breast=[count:2=pct:1.8],Cervix_Uteri=[count:1=pct:12.5],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=4;pct=0.05%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hippocampus=1,Whole_Blood=1,Spleen=1},GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.17	0.0212	FALSE	14	43	2	13	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.12	1	0.0106	0.0106	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.0212	FALSE	164	806	69	479	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCCD1--PRC1	1	1	RCCD1	6879	chr15:91505004:+	PRC1	17332	chr15:91525211:-	ONLY_REF_SPLICE	YES	298	445	0.01	0	0.0106	0.0106	LOCAL_INVERSION:+:-:[2921],RCCD1->RCC1_domain_containing_1,chr15:91498100-91506349:+,PRC1->chr15:91509270-91538859:-,protein_regulator_of_cytokinesis_1	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000937
PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	972	35	0	0.05	0.0106	0.0106	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0212	FALSE	6	50	7	115	0	FALSE	ACH-000937
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	74	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8377	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8377	TRUE	0	0	0	518	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	65	34	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	37	71	0.73	0.58	0.7358	0.3849	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	0.73	1.1207	TRUE	181	1564	124	196	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	69	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7811	0.1585	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9396	TRUE	508	994	45	981	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	54	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6113	0.0226	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6339	FALSE	499	1288	110	792	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	50	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.566	0.0906	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6566	FALSE	462	80	0	856	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	50	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	169	4	0.23	0.93	0.566	0.0113	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.93	0.5773	TRUE	519	3926	326	965	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	30	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.3396	0.1698	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.5094	FALSE	499	1288	110	792	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	19	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2151	0.0226	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2377	FALSE	499	1288	110	792	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	18	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2038	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2038	TRUE	46	1352	75	139	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	14	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1585	0.0226	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.1811	FALSE	515	4851	409	746	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	22	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0906	0.249	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.3396	FALSE	499	1288	110	792	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	11	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1245	0.0792	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2037	FALSE	462	80	0	856	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	12	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1019	0.1358	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2377	FALSE	499	1288	110	792	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	9	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	34	17	0.33	0.5	0.1019	0.0906	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.5	0.1925	TRUE	267	562	48	632	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	9	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	32	17	0.29	0.43	0.1019	0.0453	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.43	0.1472	TRUE	267	562	48	632	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	10	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1132	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1132	TRUE	0	0	0	518	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1019	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1019	TRUE	0	0	0	434	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	21	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.034	0.2377	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.2717	FALSE	499	1288	110	792	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPO--MT-CO3	7	2	MPO	9226	chr17:56348133:-	MT-CO3	13501	chrM:9565:+	INCL_NON_REF_SPLICE	YES	8248	12309	0	0	0.0792	0.0226	MPO->chr17:56347217-56358296:-,myeloperoxidase,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1018	FALSE	0	0	0	3	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	17	MT-ND6	1332	chrM:14342:-	MT-TE	4567	chrM:14701:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.034	0.1924	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.2264	FALSE	499	1288	110	792	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	15	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0.1698	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2038	FALSE	499	1288	110	792	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	15	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.034	0.1698	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.2038	FALSE	499	1288	110	792	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0679	FALSE	499	1288	110	792	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-TL1	3	8	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	12	0	0.48	1	0.034	0.0906	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	0.1246	FALSE	210	95	5	49	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R27--TAGLN2	3	1	PPP1R27	1287	chr17:79792640:-	TAGLN2	10860	chr1:159888324:-	INCL_NON_REF_SPLICE	YES	4637	1831	0	0	0.034	0.0113	PPP1R27->chr17:79791368-79792926:-,protein_phosphatase_1_regulatory_subunit_27,TAGLN2->chr1:159887897-159895522:-,transgelin_2	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0453	FALSE	0	0	0	1	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CFLAR--NEDD8	3	0	CFLAR	24420	chr2:202028807:+	NEDD8	46438	chr14:24686429:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	GTEx_FI:{Skin=[count:3=pct:1.0],Pancreas=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=3;pct=0.03%;dist=Kidney_-_Cortex=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_Transformed_fibroblasts=1},CFLAR->CASP8_and_FADD_like_apoptosis_regulator,Oncogene{Bushman},chr2:201980827-202041410:+,NEDD8->chr14:24686058-24701660:-,neural_precursor_cell_expressed,_developmentally_down-regulated_8	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	5	2	0	2	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	FALSE	499	1288	110	792	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	434	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	3	0	ZNF654	1688	chr3:88188941:+	HMGB2	12568	chr4:174253271:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	518	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLIC1--RPL7	2	1	CLIC1	4985	chr6:31701613:-	RPL7	14663	chr8:74203896:-	ONLY_REF_SPLICE	YES	2244	6993	0	0	0.0226	0.0113	CLIC1->chloride_intracellular_channel_1,chr6:31698358-31707540:-,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0339	FALSE	0	0	0	12	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYL6--HOXD13	2	0	MYL6	2462	chr12:56553406:+	HOXD13	10926	chr2:176959208:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,HOXD13->Oncogene{Bushman},chr2:176957619-176960666:+,homeobox_D13	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NASP--PSMD3	2	0	NASP	15837	chr1:46078920:+	PSMD3	33907	chr17:38152436:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NASP->chr1:46049518-46084566:+,nuclear_autoantigenic_sperm_protein,PSMD3->chr17:38137050-38154213:+,proteasome_26S_subunit,_non-ATPase_3	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP1-125I3.2--H2AFV	2	0	RP1-125I3.2	1263	chr1:26186366:+	H2AFV	10253	chr7:44874161:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RP1-125I3.2->chr1:26186104-26189911:+,H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RSRC1--MFSD1	2	0	RSRC1	9720	chr3:157921034:+	MFSD1	36592	chr3:158537438:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MFSD1->chr3:158449987-158547508:+,major_facilitator_superfamily_domain_containing_1	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0113	0.034	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0453	FALSE	467	2173	244	435	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	1	2	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	NO	59	28	0.05	0.1	0.0113	0.0226	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.1	0.0339	TRUE	4	3	0	21	0	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYZ--CCT2	1	1	LYZ	3682	chr12:69746078:+	CCT2	12770	chr12:69983265:+	ONLY_REF_SPLICE	YES	10739	710	0	0	0.0113	0.0113	LYZ->chr12:69742121-69748014:+,lysozyme,CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0226	FALSE	1	6	0	5	1	FALSE	ACH-000112
SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MANBA--UBE2D3	1	1	MANBA	1277	chr4:103681875:-	UBE2D3	38146	chr4:103723795:-	ONLY_REF_SPLICE	YES	28	685	0.07	0	0.0113	0.0113	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0226	FALSE	2	0	0	2	0	FALSE	ACH-000112
HDQP1_BREAST	FASN--ARL16	517	189	FASN	6655	chr17:80049338:-	ARL16	23551	chr17:79650183:-	INCL_NON_REF_SPLICE	YES	13	68	0.98	0.91	5.6215	2.0551	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,ARL16->ADP_ribosylation_factor_like_GTPase_16,chr17:79648204-79650954:-	HDQP1_BREAST	0.91	0.98	7.6766	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TN	143	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5549	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDQP1_BREAST	1	1	1.5549	FALSE	369	2501	205	193	0	FALSE	ACH-000643
HDQP1_BREAST	FASN--ARL16	109	85	FASN	5662	chr17:80050331:-	ARL16	23578	chr17:79650156:-	ONLY_REF_SPLICE	YES	135	68	0.59	0.74	1.1852	0.9242	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,ARL16->ADP_ribosylation_factor_like_GTPase_16,chr17:79648204-79650954:-	HDQP1_BREAST	0.59	0.74	2.1094	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	123	8	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	1.3374	0.087	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	0.99	1	1.4244	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	IFIT3--LIPJ	118	27	IFIT3	1185	chr10:91087835:+	LIPJ	9154	chr10:90347023:+	ONLY_REF_SPLICE	YES	24	3	0.86	0.98	1.2831	0.2936	IFIT3->chr10:91087651-91100728:+,interferon_induced_protein_with_tetratricopeptide_repeats_3,LIPJ->chr10:90346510-90366733:+,lipase_family_member_J	HDQP1_BREAST	0.86	0.98	1.5767	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	KANSL1--ARL17B	107	51	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	27	33	0.85	0.83	1.1634	0.5545	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HDQP1_BREAST	0.83	0.85	1.7179	TRUE	181	1564	124	196	0	FALSE	ACH-000643
HDQP1_BREAST	DHX36--KCNAB1	109	5	DHX36	1324	chr3:154041963:-	KCNAB1	57083	chr3:156249198:+	ONLY_REF_SPLICE	YES	5	0	0.96	1	1.1852	0.0544	DHX36->DEAH-box_helicase_36,chr3:153990335-154042286:-,KCNAB1->chr3:155755490-156256545:+,potassium_voltage-gated_channel_subfamily_A_member_regulatory_beta_subunit_1	HDQP1_BREAST	0.96	1	1.2396	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	105	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	18171	7	0.01	0.94	1.1417	0.0326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0.01	0.94	1.1743	FALSE	230	193	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	TIMM23B--LINC00843	96	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0438	0.3045	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HDQP1_BREAST	1	1	1.3483	TRUE	508	994	45	981	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TC	96	22	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0438	0.2392	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HDQP1_BREAST	1	1	1.283	FALSE	462	80	0	856	0	FALSE	ACH-000643
HDQP1_BREAST	BRPF1--CPNE9	80	77	BRPF1	1410	chr3:9773822:+	CPNE9	25367	chr3:9760159:+	ONLY_REF_SPLICE	YES	10	0	0.94	1	0.8699	0.8372	LOCAL_REARRANGEMENT:+:[1821],BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+,CPNE9->chr3:9745491-9771592:+,copine_family_member_9	HDQP1_BREAST	0.94	1	1.7071	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	FASN--ARL16	54	62	FASN	5662	chr17:80050331:-	ARL16	24029	chr17:79649705:-	ONLY_REF_SPLICE	YES	135	78	0.46	0.6	0.5872	0.6741	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,ARL16->ADP_ribosylation_factor_like_GTPase_16,chr17:79648204-79650954:-	HDQP1_BREAST	0.46	0.6	1.2613	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	12	226	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	94	0	0.72	1	0.1305	2.4574	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.72	1	2.5879	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	6	231	MT-ND4	1754	chrM:11513:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	YES	9588	1	0.02	1	0.0652	2.5117	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.02	1	2.5769	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	5	234	MT-ND4	1519	chrM:11278:+	MT-ND4L	5394	chrM:10485:+	INCL_NON_REF_SPLICE	YES	2220	0	0.1	1	0.0544	2.5444	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.1	1	2.5988	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	58	21	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	24406	9	0	0.9	0.6307	0.2283	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.9	0.859	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	241	MT-ND4	2229	chrM:11988:+	MT-ND4L	5411	chrM:10502:+	INCL_NON_REF_SPLICE	NO	5316	0	0.04	1	0.0326	2.6205	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.04	1	2.6531	FALSE	296	745	40	298	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	5	232	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	1704	0	0.12	1	0.0544	2.5226	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.12	1	2.577	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	4	235	MT-ND4	1545	chrM:11304:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2635	0	0.08	1	0.0435	2.5552	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.08	1	2.5987	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	25	150	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	11290	0	0.02	1	0.2718	1.631	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.02	1	1.9028	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	236	MT-ND4	2305	chrM:12064:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	6	0	0.98	1	0.0326	2.5661	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.98	1	2.5987	FALSE	268	700	35	284	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	230	MT-ND4	1533	chrM:11292:+	MT-ND4L	5529	chrM:10620:+	INCL_NON_REF_SPLICE	YES	2506	1	0.09	1	0.0326	2.5009	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.09	1	2.5335	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	5	220	MT-ND4	1114	chrM:10873:+	MT-ND4L	5509	chrM:10600:+	INCL_NON_REF_SPLICE	YES	28	0	0.89	1	0.0544	2.3921	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.89	1	2.4465	FALSE	344	826	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	4	224	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	77	0	0.75	1	0.0435	2.4356	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.75	1	2.4791	FALSE	344	826	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	226	MT-ND4	1299	chrM:11058:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	NO	242	0	0.49	1	0.0326	2.4574	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.49	1	2.49	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	224	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	70	1	0.76	1	0.0326	2.4356	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.76	1	2.4682	FALSE	344	826	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	223	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	39	0	0.85	1	0.0326	2.4247	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.85	1	2.4573	FALSE	344	826	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	220	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	26	0	0.9	1	0.0326	2.3921	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.9	1	2.4247	FALSE	344	826	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	220	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	27	0	0.89	1	0.0326	2.3921	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.89	1	2.4247	FALSE	344	826	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	16	166	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	15	1	0.92	0.99	0.174	1.805	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.92	0.99	1.979	FALSE	344	821	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	TIMM23--RP11-464F9.1	56	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	131	3	0.31	0.95	0.6089	0.0217	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HDQP1_BREAST	0.31	0.95	0.6306	TRUE	519	3926	326	965	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	49	27	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	7	0	0.92	1	0.5328	0.2936	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	0.92	1	0.8264	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	BRPF1--CPNE9	44	46	BRPF1	1410	chr3:9773822:+	CPNE9	26495	chr3:9767633:+	ONLY_REF_SPLICE	YES	10	20	0.9	0.82	0.4784	0.5002	LOCAL_REARRANGEMENT:+:[1821],BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+,CPNE9->chr3:9745491-9771592:+,copine_family_member_9	HDQP1_BREAST	0.82	0.9	0.9786	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	52	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18284	9	0	0.86	0.5654	0.0326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.86	0.598	FALSE	230	198	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	192	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	NO	18	1	0.92	0.99	0.0326	2.0877	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.92	0.99	2.1203	FALSE	344	826	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	NBEAL1--RUFY4	45	15	NBEAL1	40684	chr2:204031020:+	RUFY4	76283	chr2:218937097:+	ONLY_REF_SPLICE	YES	3	0	0.95	1	0.4893	0.1631	NBEAL1->chr2:203879602-204091101:+,neurobeachin_like_1,RUFY4->RUN_and_FYVE_domain_containing_4,chr2:218899683-218955304:+	HDQP1_BREAST	0.95	1	0.6524	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TN	23	94	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2501	1.0221	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDQP1_BREAST	1	1	1.2722	FALSE	369	2501	205	193	0	FALSE	ACH-000643
HDQP1_BREAST	MSI2--SCPEP1	43	6	MSI2	5660	chr17:55339553:+	SCPEP1	60433	chr17:55078216:+	ONLY_REF_SPLICE	YES	59	238	0.45	0.17	0.4676	0.0652	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,SCPEP1->chr17:55055466-55084129:+,serine_carboxypeptidase_1	HDQP1_BREAST	0.17	0.45	0.5328	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	4	161	MT-ND4	1475	chrM:11234:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	1422	0	0.1	1	0.0435	1.7506	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.1	1	1.7941	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	158	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	26	0	0.86	1	0.0326	1.718	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.86	1	1.7506	FALSE	344	826	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	5	143	MT-ND4	1298	chrM:11057:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	241	0	0.38	1	0.0544	1.5549	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.38	1	1.6093	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TN	40	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4349	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDQP1_BREAST	1	1	0.4349	FALSE	369	2501	205	193	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	4	140	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	280	0	0.34	1	0.0435	1.5223	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.34	1	1.5658	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	37	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.4023	0.087	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	0.98	1	0.4893	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	141	MT-ND4	1060	chrM:10819:+	MT-ND4L	5532	chrM:10623:+	INCL_NON_REF_SPLICE	NO	11	1	0.93	0.99	0.0326	1.5331	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.93	0.99	1.5657	FALSE	344	821	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	29	29	MT-ND4	1756	chrM:11515:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	24009	0	0	1	0.3153	0.3153	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.6306	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	29	25	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	92	0	0.37	1	0.3153	0.2718	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.37	1	0.5871	FALSE	344	826	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	13	84	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12	0	0.89	1	0.1414	0.9134	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.89	1	1.0548	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TN	26	26	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2827	0.2827	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDQP1_BREAST	1	1	0.5654	FALSE	369	2501	205	193	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	4	108	MT-CO3	1468	chrM:9674:+	MT-ATP6	4778	chrM:8520:+	INCL_NON_REF_SPLICE	YES	7	0	0.94	1	0.0435	1.1743	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.94	1	1.2178	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	112	MT-CO3	1511	chrM:9717:+	MT-ATP6	4856	chrM:8598:+	INCL_NON_REF_SPLICE	YES	6	0	0.95	1	0.0326	1.2178	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.95	1	1.2504	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	112	MT-ND4	1304	chrM:11063:+	MT-ND4L	5626	chrM:10717:+	INCL_NON_REF_SPLICE	YES	267	0	0.3	1	0.0326	1.2178	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.3	1	1.2504	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TN	18	48	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1957	0.5219	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDQP1_BREAST	1	1	0.7176	FALSE	369	2501	205	193	0	FALSE	ACH-000643
HDQP1_BREAST	PARD3--AL109761.5	26	16	PARD3	3733	chr10:34805907:-	AL109761.5	39324	chr21:19182812:+	ONLY_REF_SPLICE	YES	74	0	0.36	1	0.2827	0.174	PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,AL109761.5->chr21:19165805-19183162:+	HDQP1_BREAST	0.36	1	0.4567	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	RP11-96H19.1--RP11-446N19.1	27	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.97	0.95	0.2936	0.1305	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HDQP1_BREAST	0.95	0.97	0.4241	FALSE	515	4851	409	746	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TN	13	67	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1414	0.7285	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDQP1_BREAST	1	1	0.8699	FALSE	369	2501	205	193	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	27	5	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	21056	9	0	0.78	0.2936	0.0544	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.78	0.348	FALSE	231	205	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	EVPL--SRP68	25	10	EVPL	1352	chr17:74023182:-	SRP68	30198	chr17:74046607:-	ONLY_REF_SPLICE	YES	45	108	0.44	0.24	0.2718	0.1087	LOCAL_REARRANGEMENT:-:[11651],EVPL->chr17:74000583-74023533:-,envoplakin,SRP68->chr17:74035184-74068734:-,signal_recognition_particle_68	HDQP1_BREAST	0.24	0.44	0.3805	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	BRPF1--CPNE9	7	79	BRPF1	1410	chr3:9773822:+	CPNE9	25342	chr3:9760134:+	INCL_NON_REF_SPLICE	YES	10	0	0.9	1	0.0761	0.859	LOCAL_REARRANGEMENT:+:[1821],BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+,CPNE9->chr3:9745491-9771592:+,copine_family_member_9	HDQP1_BREAST	0.9	1	0.9351	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	21	23	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	23072	121	0	0.27	0.2283	0.2501	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.27	0.4784	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	9	69	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	7	20	0.92	0.8	0.0979	0.7503	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.8	0.92	0.8482	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	19	28	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	14074	0	0	1	0.2066	0.3045	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0	1	0.5111	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	7	74	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	8	55	0.91	0.6	0.0761	0.8046	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.6	0.91	0.8807	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	14	45	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	2220	0	0.03	1	0.1522	0.4893	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.03	1	0.6415	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	7	69	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	6	20	0.93	0.79	0.0761	0.7503	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.79	0.93	0.8264	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	23	3	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18292	121	0	0.18	0.2501	0.0326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.18	0.2827	FALSE	230	198	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	4	77	MT-CO3	1136	chrM:9342:+	MT-ATP6	4831	chrM:8573:+	INCL_NON_REF_SPLICE	YES	6	0	0.93	1	0.0435	0.8372	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.93	1	0.8807	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	ANPEP--MT-ND4L	21	8	ANPEP	16060	chr15:90328379:-	MT-ND4L	19321	chrM:10471:+	INCL_NON_REF_SPLICE	YES	671	0	0.04	1	0.2283	0.087	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.04	1	0.3153	FALSE	0	1	0	16	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	20	12	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	25708	121	0	0.21	0.2175	0.1305	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.21	0.348	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TN	12	43	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1305	0.4676	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDQP1_BREAST	1	1	0.5981	FALSE	369	2501	205	193	0	FALSE	ACH-000643
HDQP1_BREAST	BRPF1--CPNE9	3	78	BRPF1	1959	chr3:9774371:+	CPNE9	25367	chr3:9760159:+	ONLY_REF_SPLICE	YES	11	0	0.88	1	0.0326	0.8481	LOCAL_REARRANGEMENT:+:[1821],BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+,CPNE9->chr3:9745491-9771592:+,copine_family_member_9	HDQP1_BREAST	0.88	1	0.8807	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	17	21	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1848	0.2283	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	0.97	1	0.4131	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	15	28	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	11082	0	0	1	0.1631	0.3045	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0	1	0.4676	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	75	MT-CO3	1138	chrM:9344:+	MT-ATP6	5065	chrM:8807:+	INCL_NON_REF_SPLICE	YES	6	24	0.93	0.76	0.0326	0.8155	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.76	0.93	0.8481	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	75	MT-CO3	1140	chrM:9346:+	MT-ATP6	4937	chrM:8679:+	INCL_NON_REF_SPLICE	YES	7	23	0.92	0.77	0.0326	0.8155	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.77	0.92	0.8481	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	74	MT-CO3	1113	chrM:9319:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0326	0.8046	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.97	1	0.8372	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	73	MT-CO3	1216	chrM:9422:+	MT-ATP6	5192	chrM:8934:+	INCL_NON_REF_SPLICE	YES	16	83	0.83	0.48	0.0326	0.7938	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.48	0.83	0.8264	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	73	MT-CO3	1205	chrM:9411:+	MT-ATP6	5179	chrM:8921:+	INCL_NON_REF_SPLICE	YES	17	75	0.82	0.5	0.0326	0.7938	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.5	0.82	0.8264	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND3--MT-ATP8	21	1	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	109	1	0.17	0.96	0.2283	0.0109	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0.17	0.96	0.2392	FALSE	351	233	23	137	0	FALSE	ACH-000643
HDQP1_BREAST	RP11-494M8.4--OVCH2	20	5	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	4	0	0.86	1	0.2175	0.0544	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	HDQP1_BREAST	0.86	1	0.2719	FALSE	32	0	0	22	0	FALSE	ACH-000643
HDQP1_BREAST	IQGAP3--RP11-284F21.7	20	3	IQGAP3	8478	chr1:156530726:-	RP11-284F21.7	34894	chr1:156616946:-	ONLY_REF_SPLICE	YES	55	21	0.29	0.52	0.2175	0.0326	LOCAL_REARRANGEMENT:-:[73903],IQGAP3->IQ_motif_containing_GTPase_activating_protein_3,chr1:156495197-156542396:-,RP11-284F21.7->chr1:156616299-156631216:-	HDQP1_BREAST	0.29	0.52	0.2501	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	9	47	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	16546	0	0	1	0.0979	0.511	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0	1	0.6089	FALSE	328	800	43	304	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	70	MT-CO3	1088	chrM:9294:+	MT-ATP6	4831	chrM:8573:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0326	0.7611	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.99	1	0.7937	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	70	MT-CO3	1083	chrM:9289:+	MT-ATP6	4730	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0326	0.7611	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.99	1	0.7937	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	70	MT-CO3	1163	chrM:9369:+	MT-ATP6	5338	chrM:9080:+	INCL_NON_REF_SPLICE	YES	8	13	0.9	0.85	0.0326	0.7611	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.85	0.9	0.7937	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	4	66	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	15	0.99	0.82	0.0435	0.7176	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.82	0.99	0.7611	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	69	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	32	0.99	0.69	0.0326	0.7503	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.69	0.99	0.7829	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	18	9	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	22917	0	0	1	0.1957	0.0979	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.2936	FALSE	231	205	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	12	33	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	24149	0	0	1	0.1305	0.3588	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.4893	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	69	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	22	0	0.77	1	0.0326	0.7503	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.77	1	0.7829	FALSE	344	826	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	4	65	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0435	0.7068	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.97	1	0.7503	FALSE	344	821	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TC	15	19	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1631	0.2066	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HDQP1_BREAST	1	1	0.3697	FALSE	462	80	0	856	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	66	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	2	14	0.97	0.83	0.0326	0.7176	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.83	0.97	0.7502	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	16	13	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	27624	900	0	0.03	0.174	0.1414	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.03	0.3154	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	5	55	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0544	0.598	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	0.97	1	0.6524	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	7	46	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	45	0	0.54	1	0.0761	0.5002	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0.54	1	0.5763	FALSE	213	207	15	279	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	61	MT-CO3	1061	chrM:9267:+	MT-ATP6	5343	chrM:9085:+	INCL_NON_REF_SPLICE	YES	0	11	1	0.85	0.0326	0.6633	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.85	1	0.6959	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	11	29	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	23830	0	0	1	0.1196	0.3153	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.4349	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	13	21	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	22303	951	0	0.03	0.1414	0.2283	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.03	0.3697	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	8	40	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	7	0	0.87	1	0.087	0.4349	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	0.87	1	0.5219	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TN	18	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1957	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDQP1_BREAST	1	1	0.1957	FALSE	369	2501	205	193	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TN	8	39	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.087	0.4241	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDQP1_BREAST	1	1	0.5111	FALSE	369	2501	205	193	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	11	25	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20089	121	0	0.23	0.1196	0.2718	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.23	0.3914	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	13	17	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	25507	0	0	1	0.1414	0.1848	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.3262	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	9	33	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	24353	0	0	1	0.0979	0.3588	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.4567	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	TBCB--WDR62	16	5	TBCB	7575	chr19:36612620:+	WDR62	37456	chr19:36590301:+	ONLY_REF_SPLICE	YES	132	15	0.14	0.58	0.174	0.0544	LOCAL_REARRANGEMENT:+:[9183],TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B,WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+	HDQP1_BREAST	0.14	0.58	0.2284	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	AXIN1--DNAJC15	17	0	AXIN1	1305	chr16:402369:-	DNAJC15	20515	chr13:43639822:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1848	0	AXIN1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},axin_1,chr16:337440-402673:-,DNAJC15->DnaJ_heat_shock_protein_family_(Hsp40)_member_C15,chr13:43597339-43683045:+	HDQP1_BREAST	1	1	0.1848	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	14	12	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	25616	7	0	0.79	0.1522	0.1305	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.79	0.2827	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	6	44	MT-ND4	2122	chrM:11881:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	NO	14392	0	0	1	0.0652	0.4784	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.5436	FALSE	231	215	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	RP11-123O10.4--GRIP1	16	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.174	0.0435	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HDQP1_BREAST	1	1	0.2175	FALSE	416	2512	207	587	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	5	46	MT-CO3	1036	chrM:9242:+	MT-ATP6	4744	chrM:8486:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0.5002	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	1	1	0.5546	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	10	26	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6496	121	0.01	0.23	0.1087	0.2827	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0.01	0.23	0.3914	FALSE	218	210	16	281	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	10	26	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3323	121	0.01	0.23	0.1087	0.2827	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0.01	0.23	0.3914	FALSE	216	209	16	281	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	54	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0326	0.5872	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.97	1	0.6198	FALSE	344	821	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	5	45	MT-CO3	1033	chrM:9239:+	MT-ATP6	4768	chrM:8510:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0.4893	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	1	1	0.5437	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	4	47	MT-CO3	1040	chrM:9246:+	MT-ATP6	4775	chrM:8517:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0.511	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	1	1	0.5545	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	11	18	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	25451	0	0	1	0.1196	0.1957	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.3153	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	50	MT-ND4	2338	chrM:12097:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0326	0.5437	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	1	1	0.5763	FALSE	209	205	15	279	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	8	30	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	23877	0	0	1	0.087	0.3262	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.4132	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TN	3	50	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0.5437	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDQP1_BREAST	1	1	0.5763	FALSE	369	2501	205	193	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	49	MT-ND4	2258	chrM:12017:+	MT-ATP8	5406	chrM:8393:+	INCL_NON_REF_SPLICE	YES	2423	0	0.02	1	0.0326	0.5328	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0.02	1	0.5654	FALSE	216	209	16	281	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	45	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	7076	0	0.01	1	0.0435	0.4893	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0.01	1	0.5328	FALSE	222	212	16	282	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	9	25	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	20089	282	0	0.11	0.0979	0.2718	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.11	0.3697	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	8	29	MT-ND4	2283	chrM:12042:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	41	121	0.47	0.23	0.087	0.3153	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0.23	0.47	0.4023	FALSE	213	207	15	279	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	48	MT-ND4	2274	chrM:12033:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	208	0	0.2	1	0.0326	0.5219	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0.2	1	0.5545	FALSE	216	209	16	281	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	14	3	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	17844	9	0	0.65	0.1522	0.0326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.65	0.1848	FALSE	230	193	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	8	27	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	7	0	0.83	1	0.087	0.2936	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	0.83	1	0.3806	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	46	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	1	1	0.98	0.98	0.0326	0.5002	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.98	0.98	0.5328	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	42	MT-ND4	2240	chrM:11999:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	4178	0	0.01	1	0.0435	0.4567	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0.01	1	0.5002	FALSE	216	209	16	281	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	5	37	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	22416	0	0	1	0.0544	0.4023	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.4567	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	10	17	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	24384	1076	0	0.02	0.1087	0.1848	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.02	0.2935	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	13	5	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	18170	0	0	1	0.1414	0.0544	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.1958	FALSE	230	197	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	4	40	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	7	0	0.86	1	0.0435	0.4349	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	0.86	1	0.4784	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	RP11-96H19.1--RP11-446N19.1	10	15	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.1087	0.1631	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HDQP1_BREAST	0.96	1	0.2718	FALSE	407	2205	196	549	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	42	MT-CO3	1031	chrM:9237:+	MT-ATP6	4754	chrM:8496:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0.4567	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	1	1	0.4893	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	42	MT-ND4	2170	chrM:11929:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	10674	0	0	1	0.0326	0.4567	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.4893	FALSE	231	215	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	7	26	MT-ND4	1452	chrM:11211:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1196	0	0.03	1	0.0761	0.2827	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.03	1	0.3588	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	13	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	7	0	0.67	1	0.1414	0.0109	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.67	1	0.1523	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	9	17	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	24406	1007	0	0.03	0.0979	0.1848	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.03	0.2827	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	37	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	21026	0	0	1	0.0435	0.4023	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.4458	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	5	33	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	9	0	0.81	1	0.0544	0.3588	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.81	1	0.4132	FALSE	344	821	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	36	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	23906	0	0	1	0.0435	0.3914	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.4349	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	11	7	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	23952	1678	0	0.01	0.1196	0.0761	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.01	0.1957	FALSE	231	205	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	38	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	20875	0	0	1	0.0326	0.4132	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.4458	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TC	5	29	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0.3153	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HDQP1_BREAST	1	1	0.3697	FALSE	462	80	0	856	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	36	MT-ND4	1903	chrM:11662:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	22375	0	0	1	0.0326	0.3914	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.424	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	12	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1305	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	1	1	0.1305	FALSE	344	821	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	8	15	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	24034	1678	0	0.01	0.087	0.1631	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.01	0.2501	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	30	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1	9	0.97	0.79	0.0435	0.3262	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0.79	0.97	0.3697	FALSE	209	205	15	279	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	7	18	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	25708	0	0	1	0.0761	0.1957	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.2718	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	11	1	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	6	0	0.67	1	0.1196	0.0109	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.67	1	0.1305	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	33	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	19	1	0.65	0.0326	0.3588	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.65	1	0.3914	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	CTD-2314B22.3--RP11-536C10.19	11	0	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1196	0	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	HDQP1_BREAST	1	1	0.1196	TRUE	0	2	0	9	2	TRUE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	31	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	24014	0	0	1	0.0326	0.3371	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.3697	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	4	27	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0435	0.2936	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	0.91	1	0.3371	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	GAN--BCMO1	10	2	GAN	1329	chr16:81348885:+	BCMO1	34879	chr16:81301513:+	ONLY_REF_SPLICE	YES	0	7	1	0.63	0.1087	0.0217	LOCAL_REARRANGEMENT:+:[23810],GAN->chr16:81348557-81424489:+,gigaxonin,BCMO1->chr16:81272053-81324747:+	HDQP1_BREAST	0.63	1	0.1304	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	5	22	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0544	0.2392	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.96	1	0.2936	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND3--MT-ATP8	10	2	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	NO	59	9	0.17	0.57	0.1087	0.0217	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0.17	0.57	0.1304	FALSE	351	233	23	137	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	5	22	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	75	0	0.26	1	0.0544	0.2392	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.26	1	0.2936	FALSE	344	826	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	3	30	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	7	0	0.82	1	0.0326	0.3262	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	0.82	1	0.3588	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	IFIT3--LIPJ	10	1	IFIT3	1185	chr10:91087835:+	LIPJ	17130	chr10:90362333:+	ONLY_REF_SPLICE	YES	24	31	0.31	0.26	0.1087	0.0109	IFIT3->chr10:91087651-91100728:+,interferon_induced_protein_with_tetratricopeptide_repeats_3,LIPJ->chr10:90346510-90366733:+,lipase_family_member_J	HDQP1_BREAST	0.26	0.31	0.1196	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	5	21	MT-ND4	1779	chrM:11538:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	24274	9	0	0.74	0.0544	0.2283	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.74	0.2827	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	29	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	24141	0	0	1	0.0326	0.3153	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.3479	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	4	25	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	204	0	0.12	1	0.0435	0.2718	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.12	1	0.3153	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	3	29	MT-ND6	1126	chrM:14548:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0326	0.3153	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	0.94	1	0.3479	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	8	8	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22947	121	0	0.12	0.087	0.087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.12	0.174	FALSE	231	205	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	24	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	22346	578	0	0.05	0.0435	0.261	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.05	0.3045	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	28	MT-ND4	2281	chrM:12040:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	88	161	0.26	0.16	0.0326	0.3045	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0.16	0.26	0.3371	FALSE	213	207	15	279	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	5	20	MT-ND4	1508	chrM:11267:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	26435	0	0	1	0.0544	0.2175	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.2719	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	6	16	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	76	0	0.22	1	0.0652	0.174	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.22	1	0.2392	FALSE	344	826	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TC	10	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1087	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HDQP1_BREAST	1	1	0.1087	FALSE	462	80	0	856	0	FALSE	ACH-000643
HDQP1_BREAST	PIGU--NCOA6	9	4	PIGU	2216	chr20:33244984:-	NCOA6	47656	chr20:33285050:-	ONLY_REF_SPLICE	YES	101	0	0.11	1	0.0979	0.0435	LOCAL_REARRANGEMENT:-:[19812],PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6	HDQP1_BREAST	0.11	1	0.1414	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	5	19	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	6	0	0.8	1	0.0544	0.2066	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.8	1	0.261	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	27	MT-CO3	1126	chrM:9332:+	MT-ATP6	5405	chrM:9147:+	INCL_NON_REF_SPLICE	YES	5	0	0.86	1	0.0326	0.2936	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.86	1	0.3262	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	27	MT-ND4	2179	chrM:11938:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10100	9	0	0.77	0.0326	0.2936	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.77	0.3262	FALSE	231	215	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	5	18	MT-ND4	1453	chrM:11212:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	25475	0	0	1	0.0544	0.1957	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.2501	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	22	MT-ND4	1515	chrM:11274:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	27272	0	0	1	0.0435	0.2392	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.2827	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	7	10	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	22064	2037	0	0.01	0.0761	0.1087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.01	0.1848	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	5	17	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0544	0.1848	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.92	1	0.2392	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	25	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19617	121	0	0.19	0.0326	0.2718	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.19	0.3044	FALSE	231	215	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	5	17	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	25341	0	0	1	0.0544	0.1848	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.2392	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	5	17	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	228	0	0.09	1	0.0544	0.1848	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.09	1	0.2392	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	25	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	219	0	0.11	1	0.0326	0.2718	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.11	1	0.3044	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	25	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	58	0	0.33	1	0.0326	0.2718	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.33	1	0.3044	FALSE	344	826	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	5	17	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	228	0	0.09	1	0.0544	0.1848	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.09	1	0.2392	FALSE	344	827	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	9	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0979	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	1	1	0.0979	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	6	12	MT-ND4	1452	chrM:11211:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	25612	9	0	0.67	0.0652	0.1305	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.67	0.1957	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	24	MT-ND4	2281	chrM:12040:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	88	951	0.23	0.03	0.0326	0.261	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0.03	0.23	0.2936	FALSE	213	207	15	279	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	24	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	10100	642	0	0.04	0.0326	0.261	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.04	0.2936	FALSE	231	215	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	3	24	MT-ND6	1049	chrM:14625:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0326	0.261	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	0.96	1	0.2936	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	PIGU--NCOA6	8	4	PIGU	2216	chr20:33244984:-	NCOA6	47659	chr20:33285047:-	ONLY_REF_SPLICE	YES	101	0	0.11	1	0.087	0.0435	LOCAL_REARRANGEMENT:-:[19812],PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6	HDQP1_BREAST	0.11	1	0.1305	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	GAN--BCMO1	8	3	GAN	1329	chr16:81348885:+	BCMO1	33731	chr16:81298245:+	ONLY_REF_SPLICE	YES	0	3	1	0.79	0.087	0.0326	LOCAL_REARRANGEMENT:+:[23810],GAN->chr16:81348557-81424489:+,gigaxonin,BCMO1->chr16:81272053-81324747:+	HDQP1_BREAST	0.79	1	0.1196	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	8	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18284	121	0	0.08	0.087	0.0326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.08	0.1196	FALSE	230	198	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	8	3	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	18411	161	0	0.06	0.087	0.0326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.06	0.1196	FALSE	231	204	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	KANSL1--ARL17B	4	18	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	27	22	0.45	0.5	0.0435	0.1957	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HDQP1_BREAST	0.45	0.5	0.2392	TRUE	20	16	0	28	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	18	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	25200	0	0	1	0.0435	0.1957	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.2392	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	18	MT-ND4	1456	chrM:11215:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	25611	0	0	1	0.0435	0.1957	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.2392	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	18	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	26335	0	0	1	0.0435	0.1957	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.2392	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TC	5	14	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0.1522	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HDQP1_BREAST	1	1	0.2066	FALSE	462	80	0	856	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	17	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	25507	0	0	1	0.0435	0.1848	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.2283	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	17	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	25428	0	0	1	0.0435	0.1848	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.2283	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	5	13	MT-ND4	1510	chrM:11269:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	26649	9	0	0.67	0.0544	0.1414	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.67	0.1958	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	17	MT-ND4	1447	chrM:11206:+	MT-ATP8	5436	chrM:8423:+	INCL_NON_REF_SPLICE	YES	25616	0	0	1	0.0435	0.1848	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.2283	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	APP--MT-CO3	6	8	APP	11652	chr21:27394197:-	MT-CO3	32390	chrM:9421:+	INCL_NON_REF_SPLICE	YES	1967	16480	0.01	0	0.0652	0.087	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HDQP1_BREAST	0	0.01	0.1522	FALSE	0	0	0	26	0	FALSE	ACH-000643
HDQP1_BREAST	IGHMBP2--SPTBN2	7	4	IGHMBP2	7513	chr11:68685351:+	SPTBN2	24719	chr11:66488733:-	ONLY_REF_SPLICE	YES	30	7	0.27	0.61	0.0761	0.0435	IGHMBP2->chr11:68671310-68708070:+,immunoglobulin_mu_binding_protein_2,SPTBN2->chr11:66452719-66496697:-,spectrin_beta,_non-erythrocytic_2	HDQP1_BREAST	0.27	0.61	0.1196	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	7	4	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	18629	0	0	1	0.0761	0.0435	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.1196	FALSE	231	204	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TN	8	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.087	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDQP1_BREAST	1	1	0.087	FALSE	369	2501	205	193	0	FALSE	ACH-000643
HDQP1_BREAST	EML4--PKDCC	7	3	EML4	1287	chr2:42396776:+	PKDCC	37933	chr2:42282426:+	ONLY_REF_SPLICE	YES	38	0	0.21	1	0.0761	0.0326	EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,PKDCC->chr2:42275160-42285668:+,protein_kinase_domain_containing,_cytoplasmic	HDQP1_BREAST	0.21	1	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	7	3	MT-ND4	1152	chrM:10911:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	13978	7	0	0.59	0.0761	0.0326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.59	0.1087	FALSE	230	193	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	7	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	18171	9	0	0.53	0.0761	0.0326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.53	0.1087	FALSE	230	193	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	15	MT-ND4	1540	chrM:11299:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	28043	121	0	0.14	0.0435	0.1631	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.14	0.2066	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	7	3	MT-ND4	1151	chrM:10910:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	NO	13959	360	0	0.03	0.0761	0.0326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.03	0.1087	FALSE	230	193	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TC	3	19	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0.2066	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HDQP1_BREAST	1	1	0.2392	FALSE	462	80	0	856	0	FALSE	ACH-000643
HDQP1_BREAST	C15orf57--CBX3	6	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	15	37	0.44	0.24	0.0652	0.0652	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HDQP1_BREAST	0.24	0.44	0.1304	TRUE	267	562	48	632	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	18	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	27152	121	0	0.15	0.0326	0.1957	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.15	0.2283	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	17	MT-ND4	1523	chrM:11282:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	NO	28029	0	0	1	0.0326	0.1848	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.2174	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	17	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	25639	0	0	1	0.0326	0.1848	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.2174	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	7	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	19411	2065	0	0	0.0761	0.0109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0	0.087	FALSE	231	204	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	RP4-565E6.1--HYDIN	7	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	7	1	0.53	0.0761	0.0109	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HDQP1_BREAST	0.53	1	0.087	TRUE	456	1387	91	133	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	7	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0761	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	1	1	0.0761	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	12	MT-ND4	1443	chrM:11202:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	25682	121	0	0.12	0.0435	0.1305	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.12	0.174	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	12	MT-ND4	1459	chrM:11218:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	25849	9	0	0.64	0.0435	0.1305	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.64	0.174	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	7	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0761	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	1	1	0.0761	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0761	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	1	1	0.0761	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	ZNF407--DMD	6	4	ZNF407	7927	chr18:72353078:+	DMD	42831	chrX:32717410:-	ONLY_REF_SPLICE	YES	6	0	0.62	1	0.0652	0.0435	ZNF407->chr18:72265106-72777627:+,zinc_finger_protein_407,DMD->chrX:31115794-33357558:-,dystrophin	HDQP1_BREAST	0.62	1	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	BRPF1--CPNE9	2	19	BRPF1	1410	chr3:9773822:+	CPNE9	27211	chr3:9768349:+	ONLY_REF_SPLICE	YES	10	51	0.68	0.29	0.0217	0.2066	LOCAL_REARRANGEMENT:+:[1821],BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+,CPNE9->chr3:9745491-9771592:+,copine_family_member_9	HDQP1_BREAST	0.29	0.68	0.2283	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	CTD-2008L17.1--RP11-456O19.2	6	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0652	0.0326	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HDQP1_BREAST	0.9	1	0.0978	FALSE	20	187	4	79	0	FALSE	ACH-000643
HDQP1_BREAST	FASN--ARL16	5	7	FASN	5662	chr17:80050331:-	ARL16	24555	chr17:79649179:-	ONLY_REF_SPLICE	YES	135	193	0.08	0.06	0.0544	0.0761	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,ARL16->ADP_ribosylation_factor_like_GTPase_16,chr17:79648204-79650954:-	HDQP1_BREAST	0.06	0.08	0.1305	TRUE	0	0	0	1	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	15	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	28099	121	0	0.13	0.0326	0.1631	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.13	0.1957	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	6	3	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13124	121	0	0.07	0.0652	0.0326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.07	0.0978	FALSE	230	193	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	15	MT-ND4	1533	chrM:11292:+	MT-ATP8	5479	chrM:8466:+	INCL_NON_REF_SPLICE	YES	28286	7	0	0.72	0.0326	0.1631	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.72	0.1957	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	3	15	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0.1631	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	1	1	0.1957	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	CTD-2015H6.3--DHFR	6	2	CTD-2015H6.3	2387	chr5:79781285:-	DHFR	10792	chr5:79933828:-	ONLY_REF_SPLICE	YES	44	75	0.15	0.1	0.0652	0.0217	CTD-2015H6.3->chr5:79778112-79783882:-,DHFR->chr5:79922047-79950802:-,dihydrofolate_reductase	HDQP1_BREAST	0.1	0.15	0.0869	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	14	MT-ND4	1521	chrM:11280:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	27747	694	0	0.02	0.0326	0.1522	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.02	0.1848	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	VCL--ADK	6	2	VCL	7236	chr10:75834661:+	ADK	36629	chr10:76153899:+	ONLY_REF_SPLICE	YES	193	177	0.04	0.04	0.0652	0.0217	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[31042],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ADK->adenosine_kinase,chr10:75910960-76469061:+	HDQP1_BREAST	0.04	0.04	0.0869	FALSE	0	0	0	1	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	6	1	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	11332	642	0	0.01	0.0652	0.0109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.01	0.0761	FALSE	230	193	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	6	1	MT-ND4	1104	chrM:10863:+	MT-ATP8	5444	chrM:8431:+	INCL_NON_REF_SPLICE	NO	9853	0	0	1	0.0652	0.0109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.0761	FALSE	230	193	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	BRPF1--CPNE9	4	8	BRPF1	1410	chr3:9773822:+	CPNE9	28997	chr3:9771191:+	ONLY_REF_SPLICE	YES	10	37	0.55	0.24	0.0435	0.087	LOCAL_REARRANGEMENT:+:[1821],BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+,CPNE9->chr3:9745491-9771592:+,copine_family_member_9	HDQP1_BREAST	0.24	0.55	0.1305	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	LINC01036--CHODL-AS1	6	0	LINC01036	1105	chr1:187062078:+	CHODL-AS1	9006	chr21:19212970:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0652	0	HGNC_GENEFAM,LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,CHODL-AS1->CHODL_antisense_RNA_1,chr21:19207333-19257925:-	HDQP1_BREAST	1	1	0.0652	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	12	MT-CO3	1006	chrM:9212:+	MT-ATP6	4736	chrM:8478:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0.1305	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	1	1	0.1631	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	6	0	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0652	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	1	1	0.0652	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	12	MT-ND4	1477	chrM:11236:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	25428	9	0	0.62	0.0326	0.1305	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.62	0.1631	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	6	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0652	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	1	1	0.0652	FALSE	231	204	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	8	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	23072	2037	0	0.01	0.0435	0.087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.01	0.1305	FALSE	231	217	16	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	6	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0652	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	1	1	0.0652	FALSE	344	821	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	6	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0652	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	1	1	0.0652	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	6	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0652	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	1	1	0.0652	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	RP11-96H19.1--RP11-446N19.1	3	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.88	0.0326	0.1305	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HDQP1_BREAST	0.88	1	0.1631	FALSE	467	2173	244	435	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	10	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.0326	0.1087	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.87	1	0.1413	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND3--MT-ATP8	5	2	MT-ND3	1222	chrM:10280:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1132	9	0.01	0.44	0.0544	0.0217	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0.01	0.44	0.0761	FALSE	351	233	23	137	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	10	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	22939	0	0	1	0.0326	0.1087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.1413	FALSE	231	205	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	10	MT-ND4	1008	chrM:10767:+	MT-ND4L	5567	chrM:10658:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0.1087	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	1	1	0.1413	FALSE	344	821	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	TBCB--WDR62	4	6	TBCB	8030	chr19:36613075:+	WDR62	37456	chr19:36590301:+	ONLY_REF_SPLICE	YES	141	15	0.07	0.4	0.0435	0.0652	LOCAL_REARRANGEMENT:+:[9183],TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B,WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+	HDQP1_BREAST	0.07	0.4	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	5	1	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	11	0	0.35	1	0.0544	0.0109	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.35	1	0.0653	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	3	9	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	22	0	0.35	1	0.0326	0.0979	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	0.35	1	0.1305	FALSE	344	826	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0544	0.0109	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HDQP1_BREAST	1	1	0.0653	FALSE	292	1546	117	613	0	FALSE	ACH-000643
HDQP1_BREAST	PCAT1--RP11-382A18.2	5	1	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0544	0.0109	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	HDQP1_BREAST	0.86	1	0.0653	TRUE	4	84	1	46	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	4	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	18667	0	0	1	0.0435	0.0435	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.087	FALSE	231	204	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	4	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	20941	1233	0	0.01	0.0435	0.0435	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.01	0.087	FALSE	231	205	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	4	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0.0435	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	1	1	0.087	FALSE	344	821	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ND4L	5	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDQP1_BREAST	1	1	0.0544	FALSE	344	821	44	306	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TN	5	0	MT-TA	1020	chrM:5636:-	MT-TN	4113	chrM:5686:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDQP1_BREAST	1	1	0.0544	FALSE	369	2501	205	193	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	3	MT-ND4	1228	chrM:10987:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	18650	694	0	0.01	0.0435	0.0326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.01	0.0761	FALSE	231	204	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	3	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	18504	642	0	0.01	0.0435	0.0326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.01	0.0761	FALSE	231	204	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	RP11-96H19.1--RP11-446N19.1	1	15	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0109	0.1631	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HDQP1_BREAST	1	1	0.174	FALSE	192	492	57	212	0	FALSE	ACH-000643
HDQP1_BREAST	APP--MT-CO3	3	6	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	1733	16179	0.01	0	0.0326	0.0652	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HDQP1_BREAST	0	0.01	0.0978	FALSE	0	0	0	26	0	FALSE	ACH-000643
HDQP1_BREAST	DMD--SIPA1L2	4	2	DMD	18991	chrX:32662249:-	SIPA1L2	107644	chr1:232651354:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0435	0.0217	DMD->chrX:31115794-33357558:-,dystrophin,SIPA1L2->chr1:232533711-232697304:-,signal_induced_proliferation_associated_1_like_2	HDQP1_BREAST	1	1	0.0652	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	KANSL1--ARL17B	2	10	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	38	33	0.24	0.27	0.0217	0.1087	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HDQP1_BREAST	0.24	0.27	0.1304	TRUE	105	90	7	93	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	4	2	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	6	0	0.5	1	0.0435	0.0217	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.5	1	0.0652	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND3--MT-ATP8	4	2	MT-ND3	1290	chrM:10348:+	MT-ATP8	4418	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0.0217	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	1	1	0.0652	FALSE	351	233	23	137	0	FALSE	ACH-000643
HDQP1_BREAST	NBEAL1--RUFY4	3	6	NBEAL1	40684	chr2:204031020:+	RUFY4	77152	chr2:218937966:+	ONLY_REF_SPLICE	YES	3	10	0.75	0.47	0.0326	0.0652	NBEAL1->chr2:203879602-204091101:+,neurobeachin_like_1,RUFY4->RUN_and_FYVE_domain_containing_4,chr2:218899683-218955304:+	HDQP1_BREAST	0.47	0.75	0.0978	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	RP11-353N4.6--SEC22B	4	2	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	85	165	0.07	0.04	0.0435	0.0217	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HDQP1_BREAST	0.04	0.07	0.0652	TRUE	49	42	7	43	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND3--MT-ATP8	4	1	MT-ND3	1053	chrM:10111:+	MT-ATP8	4482	chrM:8501:+	INCL_NON_REF_SPLICE	NO	42	1677	0.11	0	0.0435	0.0109	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.11	0.0544	FALSE	351	233	23	137	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	1	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	20868	1951	0	0	0.0435	0.0109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0	0.0544	FALSE	231	205	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	EIF1--RPL5	4	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	HDQP1_BREAST	1	1	0.0435	TRUE	0	0	0	39	0	FALSE	ACH-000643
HDQP1_BREAST	FTH1--ACTG1	4	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HDQP1_BREAST	1	1	0.0435	TRUE	0	0	0	64	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	1	1	0.0435	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1007	chrM:10766:+	MT-ATP8	5386	chrM:8373:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	1	1	0.0435	FALSE	230	189	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	3	4	MT-ND6	1034	chrM:14640:-	MT-TE	4533	chrM:14735:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0326	0.0435	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	1	1	0.0761	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TN	4	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDQP1_BREAST	1	1	0.0435	FALSE	369	2501	205	193	0	FALSE	ACH-000643
HDQP1_BREAST	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDQP1_BREAST	1	1	0.0435	FALSE	369	2501	205	193	0	FALSE	ACH-000643
HDQP1_BREAST	RCC1--CTD-2354A18.1	4	0	RCC1	2175	chr1:28834672:+	CTD-2354A18.1	21770	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0435	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CTD-2354A18.1->chr18:70992176-71017113:+	HDQP1_BREAST	1	1	0.0435	TRUE	0	1	0	7	0	TRUE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	3	MT-ND4	1152	chrM:10911:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	13978	3	0	0.67	0.0326	0.0326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.67	0.0652	FALSE	230	193	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	3	MT-ND4	1244	chrM:11003:+	MT-ATP8	5476	chrM:8463:+	INCL_NON_REF_SPLICE	YES	18526	5	0	0.55	0.0326	0.0326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.55	0.0652	FALSE	231	204	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	3	MT-ND4	1144	chrM:10903:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13124	9	0	0.4	0.0326	0.0326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	0.4	0.0652	FALSE	230	193	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND3--MT-ATP8	3	2	MT-ND3	1213	chrM:10271:+	MT-ATP8	4437	chrM:8456:+	INCL_NON_REF_SPLICE	YES	1434	0	0	1	0.0326	0.0217	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.0543	FALSE	351	233	23	137	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND3--MT-ATP8	3	2	MT-ND3	1249	chrM:10307:+	MT-ATP8	4453	chrM:8472:+	INCL_NON_REF_SPLICE	YES	59	121	0.08	0.04	0.0326	0.0217	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0.04	0.08	0.0543	FALSE	351	233	23	137	0	FALSE	ACH-000643
HDQP1_BREAST	NRIP1--AF127936.7	3	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.16	1	0.0326	0.0217	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HDQP1_BREAST	0.16	1	0.0543	FALSE	164	806	69	479	0	FALSE	ACH-000643
HDQP1_BREAST	CTD-2314B22.3--RP11-536C10.19	3	1	CTD-2314B22.3	9273	chr14:19894700:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	318	0	0.01	1	0.0326	0.0109	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	HDQP1_BREAST	0.01	1	0.0435	FALSE	0	1	0	4	1	FALSE	ACH-000643
HDQP1_BREAST	LY6E--S100A6	3	1	LY6E	4687	chr8:144103227:+	S100A6	9963	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	3263	7	0	0.36	0.0326	0.0109	LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HDQP1_BREAST	0	0.36	0.0435	FALSE	0	0	0	7	0	FALSE	ACH-000643
HDQP1_BREAST	MT-CO3--MT-ATP6	3	1	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	10	0	0.29	1	0.0326	0.0109	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HDQP1_BREAST	0.29	1	0.0435	FALSE	189	492	56	216	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	1	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	10049	0	0	1	0.0326	0.0109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.0435	FALSE	230	193	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	1	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	10631	0	0	1	0.0326	0.0109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	0	1	0.0435	FALSE	230	193	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	3	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0.0109	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	1	1	0.0435	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	RP11-476K15.1--CTD-2015H3.2	3	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0.0109	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HDQP1_BREAST	1	1	0.0435	FALSE	0	46	0	73	0	FALSE	ACH-000643
HDQP1_BREAST	CTB-36O1.7--MTATP6P1	3	0	CTB-36O1.7	1656	chr5:134259084:-	MTATP6P1	5028	chr1:569356:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	GTEx_FI:{Heart=[count:4=pct:1.6],Brain=[count:3=pct:0.5],Liver=[count:1=pct:0.8]},CTB-36O1.7->chr5:134258993-134259739:-,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HDQP1_BREAST	1	1	0.0326	TRUE	8	0	0	2	0	FALSE	ACH-000643
HDQP1_BREAST	CTB-36O1.7--MTATP6P1	3	0	CTB-36O1.7	1656	chr5:134259084:-	MTATP6P1	5148	chr1:569476:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	GTEx_FI:{Heart=[count:4=pct:1.6],Brain=[count:3=pct:0.5],Liver=[count:1=pct:0.8]},CTB-36O1.7->chr5:134258993-134259739:-,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HDQP1_BREAST	1	1	0.0326	TRUE	8	0	0	2	0	FALSE	ACH-000643
HDQP1_BREAST	LINC01036--CHODL-AS1	3	0	LINC01036	1105	chr1:187062078:+	CHODL-AS1	9019	chr21:19212957:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	HGNC_GENEFAM,LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,CHODL-AS1->CHODL_antisense_RNA_1,chr21:19207333-19257925:-	HDQP1_BREAST	1	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1012	chrM:10771:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	1	1	0.0326	FALSE	230	190	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	1	1	0.0326	FALSE	230	191	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1010	chrM:10769:+	MT-ATP8	5509	chrM:8496:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	1	1	0.0326	FALSE	230	190	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1017	chrM:10776:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	1	1	0.0326	FALSE	230	190	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1002	chrM:10761:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDQP1_BREAST	1	1	0.0326	FALSE	230	189	14	283	0	FALSE	ACH-000643
HDQP1_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDQP1_BREAST	1	1	0.0326	FALSE	499	1288	110	792	0	FALSE	ACH-000643
HDQP1_BREAST	DHX36--KCNAB1	2	2	DHX36	1324	chr3:154041963:-	KCNAB1	58172	chr3:156254447:+	ONLY_REF_SPLICE	YES	5	4	0.44	0.5	0.0217	0.0217	DHX36->DEAH-box_helicase_36,chr3:153990335-154042286:-,KCNAB1->chr3:155755490-156256545:+,potassium_voltage-gated_channel_subfamily_A_member_regulatory_beta_subunit_1	HDQP1_BREAST	0.44	0.5	0.0434	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	RP11-353N4.6--SEC22B	2	2	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	85	195	0.04	0.02	0.0217	0.0217	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HDQP1_BREAST	0.02	0.04	0.0434	TRUE	33	36	9	21	0	FALSE	ACH-000643
HDQP1_BREAST	C9orf147--PTBP3	2	1	C9orf147	1815	chr9:115248670:-	PTBP3	21885	chr9:114990752:-	ONLY_REF_SPLICE	YES	0	13	1	0.19	0.0217	0.0109	C9orf147->chr9:115196096-115249484:-,chromosome_9_open_reading_frame_147,PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3	HDQP1_BREAST	0.19	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.17	1	0.0217	0.0109	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HDQP1_BREAST	0.17	1	0.0326	FALSE	125	705	46	456	0	FALSE	ACH-000643
HDQP1_BREAST	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0.0109	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HDQP1_BREAST	1	1	0.0326	FALSE	93	270	15	244	0	FALSE	ACH-000643
HDQP1_BREAST	RP11-476K15.1--CTD-2015H3.2	2	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0.0109	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HDQP1_BREAST	1	1	0.0326	FALSE	0	46	0	73	0	FALSE	ACH-000643
HDQP1_BREAST	RP11-624L4.1--RP11-265N7.1	2	1	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0217	0.0109	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	HDQP1_BREAST	0.27	1	0.0326	FALSE	0	20	1	20	0	FALSE	ACH-000643
HDQP1_BREAST	FARS2--RP3-380B8.4	2	0	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	HDQP1_BREAST	1	1	0.0217	FALSE	27	82	4	18	0	FALSE	ACH-000643
HDQP1_BREAST	NUPL2--SRSF1	2	0	NUPL2	3987	chr7:23226765:+	SRSF1	16836	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx_v2:{count=2;pct=0.02%;dist=Colon_-_Sigmoid=1,Colon_-_Transverse=1},NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	HDQP1_BREAST	1	1	0.0217	TRUE	1	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	RP11-296O14.3--TNFSF4	2	0	RP11-296O14.3	1985	chr1:173429517:-	TNFSF4	11987	chr1:173157708:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	RP11-296O14.3->chr1:173386932-173430501:-,TNFSF4->chr1:173152873-173176452:-,tumor_necrosis_factor_superfamily_member_4	HDQP1_BREAST	1	1	0.0217	TRUE	0	3	0	3	3	TRUE	ACH-000643
HDQP1_BREAST	SNHG1--XPNPEP1	2	0	SNHG1	1491	chr11:62622896:-	XPNPEP1	25343	chr10:111635357:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	SNHG1->chr11:62619460-62623386:-,small_nucleolar_RNA_host_gene_1,XPNPEP1->X-prolyl_aminopeptidase_(aminopeptidase_P)_1,_soluble,chr10:111624524-111683311:-	HDQP1_BREAST	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	TBCB--WDR62	1	3	TBCB	7526	chr19:36612571:+	WDR62	37456	chr19:36590301:+	ONLY_REF_SPLICE	YES	147	15	0.03	0.21	0.0109	0.0326	LOCAL_REARRANGEMENT:+:[9183],TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B,WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+	HDQP1_BREAST	0.03	0.21	0.0435	TRUE	0	0	0	1	0	FALSE	ACH-000643
HDQP1_BREAST	CUX1--RP11-44L9.2	1	2	CUX1	6304	chr7:101559505:+	RP11-44L9.2	58306	chr16:73533314:+	ONLY_REF_SPLICE	YES	134	1	0.02	0.75	0.0109	0.0217	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,RP11-44L9.2->chr16:73533208-73533662:+	HDQP1_BREAST	0.02	0.75	0.0326	TRUE	0	0	0	1	0	FALSE	ACH-000643
HDQP1_BREAST	PARD3--CHODL-AS1	1	2	PARD3	3733	chr10:34805907:-	CHODL-AS1	38368	chr21:19212970:-	ONLY_REF_SPLICE	YES	74	0	0.04	1	0.0109	0.0217	PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,CHODL-AS1->CHODL_antisense_RNA_1,chr21:19207333-19257925:-	HDQP1_BREAST	0.04	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	1	15	0.75	0.17	0.0109	0.0217	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HDQP1_BREAST	0.17	0.75	0.0326	FALSE	16	356	14	466	0	FALSE	ACH-000643
HDQP1_BREAST	RP11-494M8.4--OVCH2	1	2	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	13	0	0.19	1	0.0109	0.0217	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	HDQP1_BREAST	0.19	1	0.0326	FALSE	60	13	8	23	0	FALSE	ACH-000643
HDQP1_BREAST	RP11-494M8.4--OVCH2	1	2	RP11-494M8.4	4247	chr11:7902636:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	20	0	0.13	1	0.0109	0.0217	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	HDQP1_BREAST	0.13	1	0.0326	FALSE	6	0	0	3	0	FALSE	ACH-000643
HDQP1_BREAST	VCL--ADK	1	2	VCL	8327	chr10:75842302:+	ADK	36629	chr10:76153899:+	ONLY_REF_SPLICE	YES	194	177	0.02	0.02	0.0109	0.0217	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[31042],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ADK->adenosine_kinase,chr10:75910960-76469061:+	HDQP1_BREAST	0.02	0.02	0.0326	FALSE	0	0	0	1	0	FALSE	ACH-000643
HDQP1_BREAST	C9orf147--PTBP3	1	1	C9orf147	1815	chr9:115248670:-	PTBP3	20851	chr9:114993693:-	ONLY_REF_SPLICE	YES	0	8	1	0.2	0.0109	0.0109	C9orf147->chr9:115196096-115249484:-,chromosome_9_open_reading_frame_147,PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3	HDQP1_BREAST	0.2	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000643
HDQP1_BREAST	CTD-2008L17.1--RP11-456O19.2	1	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0109	0.0109	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HDQP1_BREAST	0.67	1	0.0218	FALSE	33	240	4	98	0	FALSE	ACH-000643
HDQP1_BREAST	MYEOV--MIR4435-1HG	1	1	MYEOV	6399	chr11:69084392:+	MIR4435-1HG	30474	chr2:112005818:-	ONLY_REF_SPLICE	YES	229	16	0.01	0.11	0.0109	0.0109	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,MIR4435-1HG->chr2:111953927-112252677:-	HDQP1_BREAST	0.01	0.11	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000643
HDQP1_BREAST	MYEOV--MIR4435-1HG	1	1	MYEOV	1439	chr11:69062043:+	MIR4435-1HG	30474	chr2:112005818:-	ONLY_REF_SPLICE	NO	318	16	0.01	0.11	0.0109	0.0109	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,MIR4435-1HG->chr2:111953927-112252677:-	HDQP1_BREAST	0.01	0.11	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000643
HDQP1_BREAST	PARD3--CHODL-AS1	1	1	PARD3	3733	chr10:34805907:-	CHODL-AS1	39527	chr21:19208143:-	ONLY_REF_SPLICE	NO	74	2	0.03	0.5	0.0109	0.0109	PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,CHODL-AS1->CHODL_antisense_RNA_1,chr21:19207333-19257925:-	HDQP1_BREAST	0.03	0.5	0.0218	TRUE	0	0	0	1	0	FALSE	ACH-000643
HDQP1_BREAST	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.25	0.0109	0.0109	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HDQP1_BREAST	0.25	1	0.0218	TRUE	458	1351	185	561	0	FALSE	ACH-000643
HDQP1_BREAST	VPS13C--ANXA2	1	1	VPS13C	1199	chr15:62352474:-	ANXA2	110526	chr15:60656722:-	ONLY_REF_SPLICE	YES	9	2781	0.18	0	0.0109	0.0109	VPS13C->chr15:62144588-62352672:-,vacuolar_protein_sorting_13_homolog_C,ANXA2->annexin_A2,chr15:60639333-60695082:-	HDQP1_BREAST	0	0.18	0.0218	FALSE	0	0	0	2	0	FALSE	ACH-000643
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	1926	763	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	22.2962	8.8328	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	31.129	TRUE	361	258	24	38	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAG6--SLC44A4	313	232	BAG6	2050	chr6:31619433:-	SLC44A4	25651	chr6:31833561:-	ONLY_REF_SPLICE	YES	440	5	0.55	0.99	3.6234	2.6857	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},BAG6->BCL2_associated_athanogene_6,chr6:31606805-31620482:-,SLC44A4->Oncogene{Bushman},chr6:31830969-31846823:-,solute_carrier_family_44_member_4	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.99	6.3091	TRUE	0	0	0	2	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	238	154	BCR	21553	chr22:23632600:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	46	31	0.89	0.93	2.7552	1.7828	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.93	4.538	TRUE	0	2	1	16	2	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	197	156	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	345	14	0.51	0.96	2.2806	1.8059	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.96	4.0865	TRUE	0	48	0	65	48	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP214--XKR3	191	90	NUP214	35067	chr9:134074402:+	XKR3	49819	chr22:17288973:-	ONLY_REF_SPLICE	YES	295	0	0.49	1	2.2111	1.0419	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Liver=1,Adipose_-_Subcutaneous=1,Brain_-_Cerebellum=1},Mitelman{Heart=2},NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,XKR3->XK_related_3,chr22:17264302-17302589:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	1	3.253	TRUE	1	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	13	764	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	5570	chr1:149591759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1505	8.8444	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	8.9949	TRUE	361	258	24	38	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	4	763	WI2-1896O14.1	2570	chr1:144676870:-	RP11-353N4.1	6356	chr1:149590973:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	8.8328	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	8.8791	TRUE	361	258	24	38	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	83	67	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	39	53	0.79	0.74	0.9608	0.7756	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	0.79	1.7364	TRUE	181	1564	124	196	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	44	172	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	345	1	0.39	1	0.5094	1.9911	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	2.5005	TRUE	0	35	0	55	35	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	77	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8914	0.3936	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.285	TRUE	508	994	45	981	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	56	65	UPF3A	8900	chr13:115070388:+	CDC16	30412	chr13:115037659:+	INCL_NON_REF_SPLICE	YES	182	166	0.4	0.42	0.6483	0.7525	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.42	1.4008	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-344E13.3--UBBP4	27	132	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	195	3	0.45	0.98	0.3126	1.5281	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.98	1.8407	TRUE	23	13	0	54	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	48	18	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	39	14	0.63	0.82	0.5557	0.2084	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.82	0.7641	TRUE	0	16	0	53	13	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	48	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	305	7	0.15	0.88	0.5557	0.0463	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.88	0.602	TRUE	519	3926	326	965	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C10orf76--KCNIP2	35	27	C10orf76	2222	chr10:103799770:-	KCNIP2	35935	chr10:103588956:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4052	0.3126	NEIGHBORS[1679],C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76,KCNIP2->chr10:103585731-103603677:-,potassium_voltage-gated_channel_interacting_protein_2	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7178	FALSE	0	0	0	1	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	1	154	BCR	21553	chr22:23632600:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	46	30	0.77	0.84	0.0116	1.7828	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.84	1.7944	TRUE	0	2	1	16	2	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAG6--SLC44A4	8	110	BAG6	2050	chr6:31619433:-	SLC44A4	25834	chr6:31833378:-	ONLY_REF_SPLICE	YES	440	40	0.21	0.75	0.0926	1.2734	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},BAG6->BCL2_associated_athanogene_6,chr6:31606805-31620482:-,SLC44A4->Oncogene{Bushman},chr6:31830969-31846823:-,solute_carrier_family_44_member_4	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.75	1.366	TRUE	0	0	0	2	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	35	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4052	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4052	TRUE	0	0	0	518	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP214--XKR3	7	90	NUP214	35067	chr9:134074402:+	XKR3	49816	chr22:17288976:-	INCL_NON_REF_SPLICE	YES	295	0	0.25	1	0.081	1.0419	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Liver=1,Adipose_-_Subcutaneous=1,Brain_-_Cerebellum=1},Mitelman{Heart=2},NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,XKR3->XK_related_3,chr22:17264302-17302589:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	1.1229	TRUE	1	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	21	5	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2431	0.0579	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.301	TRUE	5	4	0	46	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXDC1--TAF13	21	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2431	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2431	TRUE	7	10	0	216	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C16orf87--ORC6	15	13	C16orf87	2874	chr16:46858298:-	ORC6	18877	chr16:46727005:+	ONLY_REF_SPLICE	YES	66	173	0.3	0.14	0.1736	0.1505	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_INVERSION:-:+:[98213],C16orf87->chr16:46830519-46865323:-,chromosome_16_open_reading_frame_87,ORC6->chr16:46723555-46732306:+,origin_recognition_complex_subunit_6	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.3	0.3241	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	11	28	UPF3A	8900	chr13:115070388:+	CDC16	30506	chr13:115037753:+	INCL_NON_REF_SPLICE	YES	182	105	0.18	0.27	0.1273	0.3241	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.27	0.4514	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IMMP2L--DOCK4	15	7	IMMP2L	4976	chr7:111127294:-	DOCK4	58674	chr7:111409733:-	ONLY_REF_SPLICE	YES	135	1	0.14	0.96	0.1736	0.081	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.96	0.2546	TRUE	0	0	0	2	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	5	44	UPF3A	8863	chr13:115070351:+	CDC16	30412	chr13:115037659:+	INCL_NON_REF_SPLICE	YES	182	166	0.21	0.23	0.0579	0.5094	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.23	0.5673	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	14	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	90	1	0.17	0.1621	0.0579	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.22	TRUE	465	1949	224	605	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	12	5	AC104389.28	1084	chr11:5526799:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	0	13	1	0.57	0.1389	0.0579	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.1968	TRUE	0	16	0	53	13	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	11	4	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2783	0	0.01	1	0.1273	0.0463	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1736	FALSE	13	9	0	364	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	7	18	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	39	1	0.39	0.96	0.081	0.2084	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.96	0.2894	TRUE	0	11	0	26	8	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	8	6	AC104389.28	1093	chr11:5526790:-	HBE1	13750	chr11:5291386:-	INCL_NON_REF_SPLICE	YES	1	14	0.93	0.5	0.0926	0.0695	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.93	0.1621	TRUE	0	16	0	53	13	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	9	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	88	11	0.11	0.5	0.1042	0.0232	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.5	0.1274	TRUE	267	562	48	632	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-344E13.3--UBBP4	3	26	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34816	chr17:21730838:+	INCL_NON_REF_SPLICE	YES	195	170	0.13	0.15	0.0347	0.301	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.15	0.3357	TRUE	23	13	0	54	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	6	12	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0695	0.1389	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2084	TRUE	0	2	0	37	2	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	23	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	6	6	0.81	0.81	0.0347	0.2663	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.81	0.301	FALSE	189	492	56	216	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AP000345.1	8	1	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0926	0.0116	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.1042	TRUE	0	8	0	37	1	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	7	4	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2764	0	0	1	0.081	0.0463	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1273	FALSE	13	9	0	364	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C10orf76--KCNIP2	1	27	C10orf76	2222	chr10:103799770:-	KCNIP2	33967	chr10:103590924:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0.3126	NEIGHBORS[1679],C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76,KCNIP2->chr10:103585731-103603677:-,potassium_voltage-gated_channel_interacting_protein_2	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3242	FALSE	0	0	0	1	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	6	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	17	1	0.41	0.0695	0.0695	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	1	0.139	TRUE	458	1351	185	561	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	5	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0579	0.081	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1389	FALSE	467	2173	244	435	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	6	2	AC104389.28	1084	chr11:5526799:-	HBE1	13982	chr11:5291154:-	INCL_NON_REF_SPLICE	YES	0	460	1	0.02	0.0695	0.0232	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0927	TRUE	0	16	0	53	13	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	9	MT-CO3	1061	chrM:9267:+	MT-ATP6	5343	chrM:9085:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.76	0.0463	0.1042	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.1505	FALSE	189	492	56	216	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C16orf87--ORC6	5	3	C16orf87	2874	chr16:46858298:-	ORC6	21346	chr16:46729474:+	ONLY_REF_SPLICE	YES	66	201	0.11	0.04	0.0579	0.0347	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_INVERSION:-:+:[98213],C16orf87->chr16:46830519-46865323:-,chromosome_16_open_reading_frame_87,ORC6->chr16:46723555-46732306:+,origin_recognition_complex_subunit_6	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.11	0.0926	TRUE	0	0	0	1	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	18	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	NO	43	53	0.31	0.26	0.0116	0.2084	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.31	0.22	TRUE	105	90	7	93	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	5	1	AC104389.28	1084	chr11:5526799:-	HBE1	14230	chr11:5290906:-	ONLY_REF_SPLICE	YES	0	2337	1	0	0.0579	0.0116	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0695	FALSE	0	16	0	53	13	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COMMD10--AP3S1	4	5	COMMD10	6085	chr5:115469875:+	AP3S1	21860	chr5:115202367:+	ONLY_REF_SPLICE	YES	58	230	0.13	0.04	0.0463	0.0579	GTEx&tcga_normals:14/3694=0.38%,GTEx:0.30%,GTEx_FI:{Heart=[count:3=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Adrenal_Gland=[count:1=pct:1.2],Ovary=[count:1=pct:1.9],Uterus=[count:1=pct:2.3],Muscle=[count:1=pct:0.4],Blood=[count:1=pct:0.6]},GTEx_v2:{count=23;pct=0.27%;dist=Muscle_-_Skeletal=3,Heart_-_Left_Ventricle=3,Stomach=1,Artery_-_Tibial=1,Ovary=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Thyroid=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Whole_Blood=1,Esophagus_-_Muscularis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},YOSHIHARA_TCGA_num_samples[BLCA:1|LGG:1],{Klijn_CCL:Colo-Rectal=1,Breast=1},COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.13	0.1042	TRUE	0	0	0	1	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-RNR2	3	9	MT-CO2	1347	chrM:7932:+	MT-RNR2	5287	chrM:2273:+	INCL_NON_REF_SPLICE	YES	16527	9256	0	0	0.0347	0.1042	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1389	FALSE	24	6	1	8	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0463	0.0579	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.1042	FALSE	515	4851	409	746	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	4	4	CCDC26	6922	chr8:130365050:-	LINC00977	12110	chr8:130235615:-	INCL_NON_REF_SPLICE	YES	127	0	0.06	1	0.0463	0.0463	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0926	TRUE	0	0	0	4	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-RNR2	4	4	MT-CO2	1240	chrM:7825:+	MT-RNR2	4704	chrM:1690:+	INCL_NON_REF_SPLICE	YES	14797	0	0	1	0.0463	0.0463	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0926	FALSE	24	6	1	8	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	5	0	WI2-1896O14.1	1077	chr1:144679893:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0579	0	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0579	TRUE	211	14	4	3	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C10orf76--KCNIP2	2	11	C10orf76	2222	chr10:103799770:-	KCNIP2	36438	chr10:103588453:-	ONLY_REF_SPLICE	YES	0	6	1	0.68	0.0232	0.1273	NEIGHBORS[1679],C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76,KCNIP2->chr10:103585731-103603677:-,potassium_voltage-gated_channel_interacting_protein_2	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	1	0.1505	FALSE	0	0	0	1	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	7	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.91	0.0347	0.081	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1157	FALSE	189	492	56	216	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAG6--SLC44A4	1	13	BAG6	2050	chr6:31619433:-	SLC44A4	26525	chr6:31832687:-	ONLY_REF_SPLICE	NO	440	152	0.03	0.08	0.0116	0.1505	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},BAG6->BCL2_associated_athanogene_6,chr6:31606805-31620482:-,SLC44A4->Oncogene{Bushman},chr6:31830969-31846823:-,solute_carrier_family_44_member_4	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.08	0.1621	TRUE	0	0	0	2	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	4	MT-CO3	1006	chrM:9212:+	MT-ATP6	5062	chrM:8804:+	INCL_NON_REF_SPLICE	YES	1	15	0.88	0.32	0.0347	0.0463	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.88	0.081	FALSE	189	492	56	216	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--SNTB1	3	3	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	20	0	0.23	1	0.0347	0.0347	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.0694	TRUE	0	0	0	25	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	88	12	0.05	0.29	0.0347	0.0232	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.29	0.0579	TRUE	267	562	48	632	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	7	0	0.42	1	0.0347	0.0232	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.0579	FALSE	189	492	56	216	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	3	2	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.0347	0.0232	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.0579	TRUE	0	0	0	16	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR4--KCNJ6	3	1	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0347	0.0116	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.0463	FALSE	0	24	0	27	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1958--HSDL2	3	1	KIAA1958	6984	chr9:115408102:+	HSDL2	22364	chr9:115166275:+	ONLY_REF_SPLICE	YES	3	6	0.57	0.4	0.0347	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:+:[14437],KIAA1958->KIAA1958,chr9:115249127-115431677:+,HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.57	0.0463	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	1	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	2	9563	0.67	0	0.0347	0.0116	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.67	0.0463	FALSE	120	26	5	87	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	1	MT-ND1	1272	chrM:3578:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3	0	0.57	1	0.0347	0.0116	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.0463	FALSE	114	26	4	85	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0232	0.0579	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0811	FALSE	407	2205	196	549	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	1	8	AC104389.28	3440	chr11:5367003:-	HBE1	14230	chr11:5290906:-	ONLY_REF_SPLICE	NO	345	2337	0.03	0	0.0116	0.0926	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.1042	TRUE	0	48	0	65	48	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAG6--SLC44A4	3	0	BAG6	2050	chr6:31619433:-	SLC44A4	27687	chr6:31831525:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},BAG6->BCL2_associated_athanogene_6,chr6:31606805-31620482:-,SLC44A4->Oncogene{Bushman},chr6:31830969-31846823:-,solute_carrier_family_44_member_4	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	3	0	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0347	FALSE	33	240	4	98	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-3116E22.6--ZNF274	3	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0347	TRUE	0	0	0	13	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0347	FALSE	189	492	56	216	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	1	7	UPF3A	7775	chr13:115067500:+	CDC16	30412	chr13:115037659:+	ONLY_REF_SPLICE	YES	106	166	0.07	0.05	0.0116	0.081	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.07	0.0926	TRUE	0	0	0	1	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC27A4--RP11-27I1.4	2	2	SLC27A4	1193	chr9:131103117:+	RP11-27I1.4	16643	chr9:123560853:+	ONLY_REF_SPLICE	NO	23	17	0.15	0.19	0.0232	0.0232	SLC27A4->chr9:131102925-131123749:+,solute_carrier_family_27_member_4,RP11-27I1.4->chr9:123555829-123561848:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.19	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP70--FAIM	2	1	CEP70	6110	chr3:138289876:-	FAIM	28101	chr3:138340249:+	ONLY_REF_SPLICE	YES	81	7	0.04	0.3	0.0232	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_INVERSION:-:+:[14068],CEP70->centrosomal_protein_70,chr3:138213186-138313380:-,FAIM->Fas_apoptotic_inhibitory_molecule,Oncogene{Bushman},chr3:138327448-138352218:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.3	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AP000345.1	2	0	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	4	17	0	31	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPED1--JMJD1C	2	0	CPED1	11568	chr7:120716702:+	JMJD1C	52259	chr10:64960437:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CPED1->cadherin_like_and_PC-esterase_domain_containing_1,chr7:120628731-120937498:+,JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	62	24	1	171	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TOPBP1--PTBP2	2	0	TOPBP1	25989	chr3:133327379:-	PTBP2	42886	chr1:97270356:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TOPBP1->chr3:133317019-133380737:-,topoisomerase_(DNA)_II_binding_protein_1,PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZMYM4--SFT2D1	2	0	ZMYM4	3227	chr1:35791006:+	SFT2D1	36526	chr6:166743735:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4,SFT2D1->SFT2_domain_containing_1,chr6:166733216-166756079:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C16orf87--ORC6	1	2	C16orf87	2874	chr16:46858298:-	ORC6	21801	chr16:46729929:+	ONLY_REF_SPLICE	YES	66	169	0.04	0.02	0.0116	0.0232	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_INVERSION:-:+:[98213],C16orf87->chr16:46830519-46865323:-,chromosome_16_open_reading_frame_87,ORC6->chr16:46723555-46732306:+,origin_recognition_complex_subunit_6	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0348	TRUE	0	0	0	1	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--FAM49B	1	1	CCDC26	2447	chr8:130587128:-	FAM49B	18893	chr8:130915596:-	ONLY_REF_SPLICE	YES	91	300	0.02	0.01	0.0116	0.0116	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	1	CCDC26	2447	chr8:130587128:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	91	0	0.02	1	0.0116	0.0116	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0232	TRUE	0	3	0	7	3	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--AIG1	1	1	PROSC	2996	chr8:37623873:+	AIG1	16856	chr6:143486219:+	ONLY_REF_SPLICE	YES	134	330	0.01	0.01	0.0116	0.0116	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),AIG1->androgen-induced_1,chr6:143381633-143661441:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-476K15.1--CTD-2015H3.2	1	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	17	0	0.11	1	0.0116	0.0116	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0232	FALSE	0	46	0	73	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-849H4.2--MRPL48	1	1	RP11-849H4.2	4416	chr11:71634355:-	MRPL48	26876	chr11:73555852:+	ONLY_REF_SPLICE	NO	27	292	0.07	0.01	0.0116	0.0116	RP11-849H4.2->chr11:71576555-71639700:-,MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.07	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-964N17.1--LRCH2	1	1	RP5-964N17.1	1026	chrX:113181481:-	LRCH2	14547	chrX:114398346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0.0116	RP5-964N17.1->chrX:112859587-113181506:-,LRCH2->chrX:114345185-114468635:-,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_2	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THRAP3--WHSC1	1	1	THRAP3	3151	chr1:36725085:+	WHSC1	56742	chr4:1976590:+	ONLY_REF_SPLICE	NO	187	146	0.01	0.01	0.0116	0.0116	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000551
K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	1	1	TIMM23	4468	chr10:51613218:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	354	7	0.01	0.22	0.0116	0.0116	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	K562_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.22	0.0232	FALSE	4	2	0	9	0	FALSE	ACH-000551
TE1_OESOPHAGUS	ITGA2--ITGA1	512	128	ITGA2	30849	chr5:52388438:+	ITGA1	79883	chr5:52252152:+	INCL_NON_REF_SPLICE	YES	284	1	0.69	1	4.8075	1.2019	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[30116],ITGA2->chr5:52285156-52390609:+,integrin_subunit_alpha_2,ITGA1->chr5:52083730-52255040:+,integrin_subunit_alpha_1	TE1_OESOPHAGUS	0.69	1	6.0094	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	VMP1--CLTC	156	61	VMP1	7938	chr17:57816308:+	CLTC	24482	chr17:57721637:+	ONLY_REF_SPLICE	YES	115	407	0.65	0.35	1.4648	0.5728	{Klijn_CCL:Lung=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[10882],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain	TE1_OESOPHAGUS	0.35	0.65	2.0376	TRUE	0	1	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	DIDO1--FRG1	115	14	DIDO1	1157	chr20:61569148:-	FRG1	31269	chr4:190864357:+	ONLY_REF_SPLICE	YES	8	49	0.94	0.72	1.0798	0.1315	DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,FRG1->FSHD_region_gene_1,chr4:190861943-190884359:+	TE1_OESOPHAGUS	0.72	0.94	1.2113	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	TIMM23B--LINC00843	93	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.8732	0.2535	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TE1_OESOPHAGUS	0.98	1	1.1267	TRUE	508	994	45	981	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-TA--MT-TC	63	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5916	0.0563	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE1_OESOPHAGUS	1	1	0.6479	FALSE	462	80	0	856	0	FALSE	ACH-000647
TE1_OESOPHAGUS	TIMM23--RP11-464F9.1	51	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	390	9	0.12	0.86	0.4789	0.0282	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TE1_OESOPHAGUS	0.12	0.86	0.5071	TRUE	519	3926	326	965	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-ND4--MT-ND4L	7	121	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	461	0	0.22	1	0.0657	1.1362	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE1_OESOPHAGUS	0.22	1	1.2019	FALSE	344	827	44	306	0	FALSE	ACH-000647
TE1_OESOPHAGUS	PLXDC1--TAF13	36	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.338	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	TE1_OESOPHAGUS	1	1	0.338	TRUE	7	10	0	216	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-ND4--MT-ND4L	3	129	MT-ND4	1937	chrM:11696:+	MT-ND4L	5386	chrM:10477:+	INCL_NON_REF_SPLICE	YES	10991	0	0.01	1	0.0282	1.2113	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE1_OESOPHAGUS	0.01	1	1.2395	FALSE	344	827	44	306	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-ND4--MT-ND4L	3	128	MT-ND4	1820	chrM:11579:+	MT-ND4L	5416	chrM:10507:+	INCL_NON_REF_SPLICE	YES	5644	0	0.02	1	0.0282	1.2019	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE1_OESOPHAGUS	0.02	1	1.2301	FALSE	344	827	44	306	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-ND4--MT-ND4L	5	116	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	18	0	0.87	1	0.0469	1.0892	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE1_OESOPHAGUS	0.87	1	1.1361	FALSE	344	826	44	306	0	FALSE	ACH-000647
TE1_OESOPHAGUS	CCDC91--RP11-993B23.3	31	7	CCDC91	12544	chr12:28412375:+	RP11-993B23.3	34818	chr12:28111452:+	INCL_NON_REF_SPLICE	YES	26	0	0.59	1	0.2911	0.0657	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,RP11-993B23.3->chr12:28111450-28122746:+	TE1_OESOPHAGUS	0.59	1	0.3568	TRUE	0	2	0	1	2	TRUE	ACH-000647
TE1_OESOPHAGUS	MT-ND4--MT-ND4L	3	115	MT-ND4	1220	chrM:10979:+	MT-ND4L	5536	chrM:10627:+	INCL_NON_REF_SPLICE	YES	20	0	0.86	1	0.0282	1.0798	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE1_OESOPHAGUS	0.86	1	1.108	FALSE	344	827	44	306	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-ND4--MT-ND4L	7	88	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	0	0.96	1	0.0657	0.8263	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE1_OESOPHAGUS	0.96	1	0.892	FALSE	344	821	44	306	0	FALSE	ACH-000647
TE1_OESOPHAGUS	SIRT1--MYPN	25	12	SIRT1	12301	chr10:69676366:+	MYPN	20217	chr10:69881195:+	INCL_NON_REF_SPLICE	YES	32	10	0.54	0.79	0.2347	0.1127	SIRT1->Oncogene{Bushman},chr10:69644427-69678147:+,sirtuin_1,MYPN->chr10:69865912-69971774:+,myopalladin	TE1_OESOPHAGUS	0.54	0.79	0.3474	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	RP11-680G10.1--GSE1	22	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	48	1	0.4	0.2066	0.0939	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TE1_OESOPHAGUS	0.4	1	0.3005	TRUE	465	1949	224	605	0	FALSE	ACH-000647
TE1_OESOPHAGUS	KCTD14--NDUFC2	19	4	KCTD14	3361	chr11:77734206:-	NDUFC2	10559	chr11:77784187:-	ONLY_REF_SPLICE	YES	2	704	0.92	0.03	0.1784	0.0376	LOCAL_REARRANGEMENT:-:[22113],KCTD14->chr11:77726761-77757237:-,potassium_channel_tetramerization_domain_containing_14,NDUFC2->NADH:ubiquinone_oxidoreductase_subunit_C2,chr11:77779350-77791265:-	TE1_OESOPHAGUS	0.03	0.92	0.216	TRUE	0	0	0	1	0	FALSE	ACH-000647
TE1_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	17	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.93	1	0.1596	0.0751	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE1_OESOPHAGUS	0.93	1	0.2347	FALSE	407	2205	196	549	0	FALSE	ACH-000647
TE1_OESOPHAGUS	PIK3C2A--USH1C	17	6	PIK3C2A	25443	chr11:17131979:-	USH1C	54453	chr11:17537837:-	ONLY_REF_SPLICE	YES	36	3	0.39	0.88	0.1596	0.0563	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,USH1C->USH1_protein_network_component_harmonin,chr11:17515442-17565963:-	TE1_OESOPHAGUS	0.39	0.88	0.2159	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	SLC16A3--ZBED5	17	0	SLC16A3	1133	chr17:80186405:+	ZBED5	19134	chr11:10877804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1596	0	SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3,ZBED5->chr11:10833621-10880343:-,zinc_finger_BED-type_containing_5	TE1_OESOPHAGUS	1	1	0.1596	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	JMJD1C--RP11-445N18.7	15	3	JMJD1C	2633	chr10:65140078:-	RP11-445N18.7	41376	chr10:45652226:+	ONLY_REF_SPLICE	YES	8	1	0.69	0.95	0.1408	0.0282	JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C,RP11-445N18.7->chr10:45642842-45666837:+	TE1_OESOPHAGUS	0.69	0.95	0.169	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	MT-ND4--MT-ND4L	3	41	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.0282	0.385	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE1_OESOPHAGUS	0.92	1	0.4132	FALSE	344	821	44	306	0	FALSE	ACH-000647
TE1_OESOPHAGUS	TTI1--KIAA1755	13	0	TTI1	1065	chr20:36661806:-	KIAA1755	32562	chr20:36842145:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1221	0	TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-,KIAA1755->KIAA1755,chr20:36838890-36889174:-	TE1_OESOPHAGUS	1	1	0.1221	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	DIDO1--FRG1	11	7	DIDO1	1157	chr20:61569148:-	FRG1	32340	chr4:190873317:+	ONLY_REF_SPLICE	YES	8	46	0.69	0.28	0.1033	0.0657	DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,FRG1->FSHD_region_gene_1,chr4:190861943-190884359:+	TE1_OESOPHAGUS	0.28	0.69	0.169	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	RP11-680G10.1--GSE1	10	11	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	19	1	0.53	0.0939	0.1033	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TE1_OESOPHAGUS	0.53	1	0.1972	TRUE	458	1351	185	561	0	FALSE	ACH-000647
TE1_OESOPHAGUS	NRIP1--AF127936.7	12	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.78	1	0.1127	0.0188	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TE1_OESOPHAGUS	0.78	1	0.1315	FALSE	292	1546	117	613	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-ND4--MT-ND4L	9	13	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	705	0	0.03	1	0.0845	0.1221	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE1_OESOPHAGUS	0.03	1	0.2066	FALSE	344	827	44	306	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-TA--MT-TC	11	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1033	0.0469	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE1_OESOPHAGUS	1	1	0.1502	FALSE	462	80	0	856	0	FALSE	ACH-000647
TE1_OESOPHAGUS	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1127	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TE1_OESOPHAGUS	1	1	0.1127	TRUE	0	0	0	434	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-ATP6--MT-CO1	10	7	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2116	18124	0.01	0	0.0939	0.0657	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE1_OESOPHAGUS	0	0.01	0.1596	FALSE	183	104	9	328	0	FALSE	ACH-000647
TE1_OESOPHAGUS	FAM129B--ENG	11	2	FAM129B	1068	chr9:130341201:-	ENG	23528	chr9:130588951:-	ONLY_REF_SPLICE	YES	1	42	0.93	0.24	0.1033	0.0188	FAM129B->chr9:130267618-130341268:-,family_with_sequence_similarity_129_member_B,ENG->chr9:130577291-130617035:-,endoglin	TE1_OESOPHAGUS	0.24	0.93	0.1221	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	MT-ND4--MT-ND4L	6	22	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8533	0	0	1	0.0563	0.2066	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE1_OESOPHAGUS	0	1	0.2629	FALSE	328	800	43	304	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-ND4--MT-ND4L	8	13	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	4415	0	0	1	0.0751	0.1221	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE1_OESOPHAGUS	0	1	0.1972	FALSE	344	827	44	306	0	FALSE	ACH-000647
TE1_OESOPHAGUS	C15orf57--CBX3	8	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	65	53	0.21	0.24	0.0751	0.0845	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TE1_OESOPHAGUS	0.21	0.24	0.1596	TRUE	267	562	48	632	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-ND4--MT-ND4L	4	21	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0376	0.1972	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE1_OESOPHAGUS	0.93	1	0.2348	FALSE	344	821	44	306	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-ATP6--MT-CO1	9	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE1_OESOPHAGUS	1	1	0.0845	FALSE	183	104	9	328	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-ND3--MT-ATP8	9	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE1_OESOPHAGUS	1	1	0.0845	FALSE	351	233	23	137	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-TA--MT-TC	6	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0.0845	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE1_OESOPHAGUS	1	1	0.1408	FALSE	462	80	0	856	0	FALSE	ACH-000647
TE1_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	7	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	2	0.86	0.86	0.0657	0.0469	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE1_OESOPHAGUS	0.86	0.86	0.1126	FALSE	515	4851	409	746	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-ND4--MT-ND4L	3	20	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	607	0	0.04	1	0.0282	0.1878	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE1_OESOPHAGUS	0.04	1	0.216	FALSE	344	827	44	306	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-ATP6--MT-CO1	7	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0657	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE1_OESOPHAGUS	1	1	0.0657	FALSE	183	104	9	328	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-ND4--MT-ND4L	4	12	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	21	0	0.43	1	0.0376	0.1127	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE1_OESOPHAGUS	0.43	1	0.1503	FALSE	344	826	44	306	0	FALSE	ACH-000647
TE1_OESOPHAGUS	AFMID--TNRC6C	6	1	AFMID	6295	chr17:76198832:+	TNRC6C	34525	chr17:76087521:+	ONLY_REF_SPLICE	YES	25	7	0.22	0.5	0.0563	0.0094	LOCAL_REARRANGEMENT:+:[78482],AFMID->arylformamidase,chr17:76183398-76203782:+,TNRC6C->chr17:76000249-76104916:+,trinucleotide_repeat_containing_6C	TE1_OESOPHAGUS	0.22	0.5	0.0657	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	MT-ND4--MT-ND4L	3	13	MT-ND4	1452	chrM:11211:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	293	0	0.05	1	0.0282	0.1221	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE1_OESOPHAGUS	0.05	1	0.1503	FALSE	344	827	44	306	0	FALSE	ACH-000647
TE1_OESOPHAGUS	JMJD1C--RP11-445N18.7	5	4	JMJD1C	2633	chr10:65140078:-	RP11-445N18.7	37961	chr10:45645793:+	INCL_NON_REF_SPLICE	YES	8	0	0.53	1	0.0469	0.0376	JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C,RP11-445N18.7->chr10:45642842-45666837:+	TE1_OESOPHAGUS	0.53	1	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	MT-ATP6--MT-CO1	4	7	MT-ATP6	1444	chrM:8970:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	6580	14509	0	0	0.0376	0.0657	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE1_OESOPHAGUS	0	0	0.1033	FALSE	183	104	9	328	0	FALSE	ACH-000647
TE1_OESOPHAGUS	NRIP1--AF127936.7	5	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.35	1	0.0469	0.0282	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TE1_OESOPHAGUS	0.35	1	0.0751	FALSE	125	705	46	456	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-TA--MT-TC	4	6	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0.0563	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE1_OESOPHAGUS	1	1	0.0939	FALSE	462	80	0	856	0	FALSE	ACH-000647
TE1_OESOPHAGUS	KCTD14--NDUFC2	4	4	KCTD14	3361	chr11:77734206:-	NDUFC2	9351	chr11:77790832:-	INCL_NON_REF_SPLICE	YES	2	3	0.8	0.73	0.0376	0.0376	LOCAL_REARRANGEMENT:-:[22113],KCTD14->chr11:77726761-77757237:-,potassium_channel_tetramerization_domain_containing_14,NDUFC2->NADH:ubiquinone_oxidoreductase_subunit_C2,chr11:77779350-77791265:-	TE1_OESOPHAGUS	0.73	0.8	0.0752	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	MT-ATP6--MT-CO1	4	4	MT-ATP6	1225	chrM:8751:+	MT-CO1	5165	chrM:6387:+	INCL_NON_REF_SPLICE	YES	9305	14756	0	0	0.0376	0.0376	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE1_OESOPHAGUS	0	0	0.0752	FALSE	183	104	9	328	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-ATP6--MT-CO1	5	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE1_OESOPHAGUS	1	1	0.0469	FALSE	183	104	9	328	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MT-ND4--MT-ND4L	5	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE1_OESOPHAGUS	1	1	0.0469	FALSE	344	821	44	306	0	FALSE	ACH-000647
TE1_OESOPHAGUS	MTND4P12--MTATP6P1	5	0	MTND4P12	1756	chr5:134262971:-	MTATP6P1	5665	chr1:569363:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	TE1_OESOPHAGUS	1	1	0.0469	TRUE	27	31	5	8	0	FALSE	ACH-000647
TE1_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	3	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0.0751	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE1_OESOPHAGUS	1	1	0.1033	FALSE	192	492	57	212	0	FALSE	ACH-000647
TE1_OESOPHAGUS	SLC16A3--ZBED5	5	0	SLC16A3	1149	chr17:80186421:+	ZBED5	19134	chr11:10877804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0469	0	SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3,ZBED5->chr11:10833621-10880343:-,zinc_finger_BED-type_containing_5	TE1_OESOPHAGUS	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	C15orf57--CBX3	3	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	61	53	0.12	0.13	0.0282	0.0469	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TE1_OESOPHAGUS	0.12	0.13	0.0751	TRUE	267	562	48	632	0	FALSE	ACH-000647
TE1_OESOPHAGUS	CEP128--KIF26B	4	1	CEP128	28669	chr14:81209419:-	KIF26B	59588	chr1:245809423:+	ONLY_REF_SPLICE	YES	12	0	0.29	1	0.0376	0.0094	CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B	TE1_OESOPHAGUS	0.29	1	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	MT-TA--MT-TC	3	5	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0.0469	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE1_OESOPHAGUS	1	1	0.0751	FALSE	462	80	0	856	0	FALSE	ACH-000647
TE1_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.8	0.0282	0.0469	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE1_OESOPHAGUS	0.8	1	0.0751	FALSE	467	2173	244	435	0	FALSE	ACH-000647
TE1_OESOPHAGUS	CCDC91--RP11-993B23.3	3	4	CCDC91	5569	chr12:28343574:+	RP11-993B23.3	34818	chr12:28111452:+	INCL_NON_REF_SPLICE	YES	19	0	0.27	1	0.0282	0.0376	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,RP11-993B23.3->chr12:28111450-28122746:+	TE1_OESOPHAGUS	0.27	1	0.0658	TRUE	0	0	0	2	0	TRUE	ACH-000647
TE1_OESOPHAGUS	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE1_OESOPHAGUS	1	1	0.0376	FALSE	462	80	0	856	0	FALSE	ACH-000647
TE1_OESOPHAGUS	NRIP1--AF127936.7	3	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.21	1	0.0282	0.0376	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TE1_OESOPHAGUS	0.21	1	0.0658	FALSE	164	806	69	479	0	FALSE	ACH-000647
TE1_OESOPHAGUS	PIK3C2A--USH1C	3	4	PIK3C2A	25443	chr11:17131979:-	USH1C	56689	chr11:17533601:-	ONLY_REF_SPLICE	YES	36	2	0.16	0.78	0.0282	0.0376	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,USH1C->USH1_protein_network_component_harmonin,chr11:17515442-17565963:-	TE1_OESOPHAGUS	0.16	0.78	0.0658	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	ASAP1--PVT1	3	0	ASAP1	3357	chr8:131414131:-	PVT1	69169	chr8:129108764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	TE1_OESOPHAGUS	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TE1_OESOPHAGUS	1	1	0.0282	TRUE	0	0	0	434	0	FALSE	ACH-000647
TE1_OESOPHAGUS	PPP1R12C--CNN2	3	0	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	TE1_OESOPHAGUS	1	1	0.0282	TRUE	35	34	3	30	0	FALSE	ACH-000647
TE1_OESOPHAGUS	JMJD1C--RP11-445N18.7	2	3	JMJD1C	2633	chr10:65140078:-	RP11-445N18.7	40311	chr10:45648286:+	ONLY_REF_SPLICE	YES	8	0	0.38	1	0.0188	0.0282	JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C,RP11-445N18.7->chr10:45642842-45666837:+	TE1_OESOPHAGUS	0.38	1	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	DPH6-AS1--RP11-684B21.1	2	1	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0188	0.0094	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	TE1_OESOPHAGUS	0.43	1	0.0282	TRUE	17	119	17	33	0	FALSE	ACH-000647
TE1_OESOPHAGUS	JPH2--SIK1	2	1	JPH2	6198	chr20:42788258:-	SIK1	16668	chr21:44846072:-	ONLY_REF_SPLICE	YES	30	58	0.09	0.05	0.0188	0.0094	JPH2->chr20:42740335-42816218:-,junctophilin_2,SIK1->chr21:44834395-44847008:-,salt_inducible_kinase_1	TE1_OESOPHAGUS	0.05	0.09	0.0282	TRUE	0	0	0	1	0	FALSE	ACH-000647
TE1_OESOPHAGUS	ABCC3--ACOX1	2	0	ABCC3	4429	chr17:48733369:+	ACOX1	43605	chr17:73945978:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+,ACOX1->acyl-CoA_oxidase_1,_palmitoyl,chr17:73937588-73975515:-	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	ANKRD52--ATP5B	2	0	ANKRD52	7347	chr12:56645799:-	ATP5B	22177	chr12:57039137:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ANKRD52->ankyrin_repeat_domain_52,chr12:56631591-56652175:-,ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	AP3D1--SPAG7	2	0	AP3D1	12179	chr19:2123357:-	SPAG7	31950	chr17:4869614:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,SPAG7->chr17:4862521-4871167:-,sperm_associated_antigen_7	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	ARHGAP29--PYGL	2	0	ARHGAP29	6167	chr1:94674388:-	PYGL	47041	chr14:51382689:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-,PYGL->chr14:51324609-51411454:-,phosphorylase,_glycogen,_liver	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	BANP--CNDP2	2	0	BANP	21949	chr16:88052273:+	CNDP2	52926	chr18:72186184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+,CNDP2->CNDP_dipeptidase_2_(metallopeptidase_M20_family),chr18:72163051-72188366:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	BRD2--PIP4K2B	2	0	BRD2	3138	chr6:32938574:+	PIP4K2B	19533	chr17:36943173:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	BRD2->Oncogene{Bushman},bromodomain_containing_2,chr6:32936437-32949282:+,PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	CDCA8--DVL3	2	0	CDCA8	1367	chr1:38158456:+	DVL3	18726	chr3:183882901:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	CDCA8->cell_division_cycle_associated_8,chr1:38158090-38175391:+,DVL3->chr3:183873176-183891398:+,dishevelled_segment_polarity_protein_3	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	EBAG9--YWHAZ	2	0	EBAG9	1751	chr8:110552690:+	YWHAZ	23448	chr8:101937267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	EBAG9->Oncogene{Bushman},chr8:110551940-110578225:+,estrogen_receptor_binding_site_associated,_antigen,_9,YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	EIF2AK2--TPX2	2	0	EIF2AK2	3694	chr2:37374831:-	TPX2	45390	chr20:30382205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	EIF2AK2->Oncogene{Bushman},chr2:37326353-37384208:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_2,TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	EIF4A2--ACTN1	2	0	EIF4A2	2273	chr3:186502266:+	ACTN1	24963	chr14:69360464:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,ACTN1->actinin_alpha_1,chr14:69340860-69446157:-	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	ENTPD4--AKAP2	2	0	ENTPD4	18819	chr8:23261467:-	AKAP2	36773	chr9:112898407:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ENTPD4->chr8:23243296-23315208:-,ectonucleoside_triphosphate_diphosphohydrolase_4,AKAP2->A-kinase_anchoring_protein_2,chr9:112542769-112934792:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	HAT1--NDUFS1	2	0	HAT1	6391	chr2:172809519:+	NDUFS1	35065	chr2:206989000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1,NDUFS1->NADH:ubiquinone_oxidoreductase_core_subunit_S1,chr2:206979541-207024327:-	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	HDGFRP2--MYBL2	2	0	HDGFRP2	2828	chr19:4475580:+	MYBL2	25574	chr20:42331130:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	HDGFRP2->chr19:4472284-4502223:+,MYBL2->MYB_proto-oncogene_like_2,Oncogene{Bushman},chr20:42295754-42345136:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	KIAA1671--GNAS	2	0	KIAA1671	1043	chr22:25348739:+	GNAS	48655	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	GTEx&tcga_normals:1/3694=0.03%,KIAA1671->KIAA1671,chr22:25348697-25593415:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	MICALL2--NFYB	2	0	MICALL2	1319	chr7:1498820:-	NFYB	22421	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	MICALL2->MICAL_like_2,chr7:1468101-1499138:-,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	MRPS6--RUNX1	2	0	MRPS6	1045	chr21:35445568:+	RUNX1	38237	chr21:36253010:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	MTBP--TAF15	2	0	MTBP	12659	chr8:121483177:+	TAF15	46759	chr17:34169371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	MTBP->MDM2_binding_protein,chr8:121457640-121554373:+,TAF15->Oncogene{Bushman},TATA-box_binding_protein_associated_factor_15,chr17:34136459-34191619:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	NUFIP2--MID2	2	0	NUFIP2	4061	chr17:27613010:-	MID2	25728	chrX:107160736:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2,MID2->chrX:107068985-107170423:+,midline_2	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	OVOL2--DZANK1	2	0	OVOL2	3520	chr20:18037301:-	DZANK1	16639	chr20:18436005:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2,DZANK1->chr20:18364011-18447925:-,double_zinc_ribbon_and_ankyrin_repeat_domains_1	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	PRR16--CTD-2334D19.1	2	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	TE1_OESOPHAGUS	1	1	0.0188	FALSE	56	216	12	147	0	FALSE	ACH-000647
TE1_OESOPHAGUS	RARS2--ORC3	2	0	RARS2	11354	chr6:88239260:-	ORC3	39790	chr6:88362834:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[118],RARS2->arginyl-tRNA_synthetase_2,_mitochondrial,chr6:88224096-88299721:-,ORC3->chr6:88299839-88377169:+,origin_recognition_complex_subunit_3	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	RP11-138I17.1--G3BP1	2	0	RP11-138I17.1	4196	chr4:137837329:-	G3BP1	14591	chr5:151166164:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	RP11-138I17.1->chr4:137717877-138133953:-,G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	RP11-16B13.1--PTPRA	2	0	RP11-16B13.1	1081	chr14:60558421:-	PTPRA	15260	chr20:2944918:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	RP11-16B13.1->chr14:60435834-60558501:-,PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	RP11-849H4.2--MTG2	2	0	RP11-849H4.2	8261	chr11:71627120:-	MTG2	19006	chr20:60770858:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	RP11-849H4.2->chr11:71576555-71639700:-,MTG2->chr20:60758085-60778624:+,mitochondrial_ribosome_associated_GTPase_2	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	SLC1A3--SPEF2	2	0	SLC1A3	6825	chr5:36629689:+	SPEF2	22042	chr5:35628562:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	SLC1A3->chr5:36606457-36688436:+,solute_carrier_family_1_member_3,SPEF2->chr5:35617946-35814713:+,sperm_flagellar_2	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	SRRM2--SUN1	2	0	SRRM2	1518	chr16:2802847:+	SUN1	32874	chr7:888055:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	SRRM2->chr16:2802330-2822539:+,serine/arginine_repetitive_matrix_2,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	STT3A--EI24	2	0	STT3A	21928	chr11:125491414:+	EI24	38866	chr11:125453416:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	LOCAL_REARRANGEMENT:+:[7032],STT3A->STT3A,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr11:125461607-125495110:+,EI24->EI24,_autophagy_associated_transmembrane_protein,chr11:125439112-125454575:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	TAF9--DOCK1	2	0	TAF9	1357	chr5:68665484:-	DOCK1	13985	chr10:128768966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	TAF9->TATA-box_binding_protein_associated_factor_9,chr5:68646811-68665840:-,DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	U2SURP--EAF2	2	0	U2SURP	4885	chr3:142720515:+	EAF2	45288	chr3:121573534:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+,EAF2->ELL_associated_factor_2,chr3:121554030-121605373:+	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	UBR2--GGA2	2	0	UBR2	10992	chr6:42583828:+	GGA2	64931	chr16:23494325:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	UBR2->chr6:42531800-42661242:+,ubiquitin_protein_ligase_E3_component_n-recognin_2,GGA2->chr16:23474863-23533316:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_2	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	ZC3H14--HEATR5A	2	0	ZC3H14	7851	chr14:89041197:+	HEATR5A	34868	chr14:31856581:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14,HEATR5A->HEAT_repeat_containing_5A,chr14:31760994-31889788:-	TE1_OESOPHAGUS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	JMJD1C--RP11-445N18.7	1	3	JMJD1C	2633	chr10:65140078:-	RP11-445N18.7	39200	chr10:45647032:+	ONLY_REF_SPLICE	YES	8	2	0.33	0.67	0.0094	0.0282	JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C,RP11-445N18.7->chr10:45642842-45666837:+	TE1_OESOPHAGUS	0.33	0.67	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	PIK3C2A--USH1C	1	2	PIK3C2A	25443	chr11:17131979:-	USH1C	62248	chr11:17523527:-	ONLY_REF_SPLICE	YES	36	9	0.08	0.25	0.0094	0.0188	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,USH1C->USH1_protein_network_component_harmonin,chr11:17515442-17565963:-	TE1_OESOPHAGUS	0.08	0.25	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	RB1--ITM2B	1	2	RB1	17872	chr13:48955579:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	14	271	0.18	0.01	0.0094	0.0188	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	TE1_OESOPHAGUS	0.01	0.18	0.0282	FALSE	27	49	8	8	0	FALSE	ACH-000647
TE1_OESOPHAGUS	TBC1D19--CLNK	1	2	TBC1D19	8996	chr4:26640456:+	CLNK	33045	chr4:10637525:-	ONLY_REF_SPLICE	NO	4	0	0.43	1	0.0094	0.0188	TBC1D19->TBC1_domain_family_member_19,chr4:26578059-26756973:+,CLNK->chr4:10488019-10686489:-,cytokine_dependent_hematopoietic_cell_linker	TE1_OESOPHAGUS	0.43	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	CCDC148--PKP4	1	1	CCDC148	5747	chr2:159214961:-	PKP4	30519	chr2:159459582:+	ONLY_REF_SPLICE	NO	3	99	0.4	0.02	0.0094	0.0094	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:-:+:[211],CCDC148->chr2:159027593-159313265:-,coiled-coil_domain_containing_148,PKP4->chr2:159313476-159539391:+,plakophilin_4	TE1_OESOPHAGUS	0.02	0.4	0.0188	TRUE	0	0	0	1	0	FALSE	ACH-000647
TE1_OESOPHAGUS	JPH2--SIK1	1	1	JPH2	6198	chr20:42788258:-	SIK1	17337	chr21:44845403:-	ONLY_REF_SPLICE	YES	30	74	0.06	0.03	0.0094	0.0094	JPH2->chr20:42740335-42816218:-,junctophilin_2,SIK1->chr21:44834395-44847008:-,salt_inducible_kinase_1	TE1_OESOPHAGUS	0.03	0.06	0.0188	TRUE	0	0	0	1	0	FALSE	ACH-000647
TE1_OESOPHAGUS	OVOL2--DZANK1	1	1	OVOL2	3520	chr20:18037301:-	DZANK1	12862	chr20:18447925:-	ONLY_REF_SPLICE	YES	32	0	0.06	1	0.0094	0.0094	OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2,DZANK1->chr20:18364011-18447925:-,double_zinc_ribbon_and_ankyrin_repeat_domains_1	TE1_OESOPHAGUS	0.06	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000647
TE1_OESOPHAGUS	PRKDC--UBE2V2	1	1	PRKDC	8053	chr8:48855769:-	UBE2V2	95922	chr8:48973242:+	ONLY_REF_SPLICE	YES	123	191	0.02	0.01	0.0094	0.0094	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[48217],PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,UBE2V2->chr8:48920960-48977268:+,ubiquitin_conjugating_enzyme_E2_V2	TE1_OESOPHAGUS	0.01	0.02	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000647
TE1_OESOPHAGUS	REEP3--JMJD1C	1	1	REEP3	1215	chr10:65281337:+	JMJD1C	20430	chr10:65024524:-	ONLY_REF_SPLICE	NO	66	38	0.03	0.05	0.0094	0.0094	LOCAL_INVERSION:+:-:[55401],REEP3->chr10:65281123-65384883:+,receptor_accessory_protein_3,JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C	TE1_OESOPHAGUS	0.03	0.05	0.0188	TRUE	0	0	0	1	0	FALSE	ACH-000647
TE1_OESOPHAGUS	TIMM23--RP11-464F9.1	1	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	26959	chr10:75454562:-	ONLY_REF_SPLICE	YES	390	10	0.01	0.17	0.0094	0.0094	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TE1_OESOPHAGUS	0.01	0.17	0.0188	FALSE	1	3	0	8	0	FALSE	ACH-000647
TE1_OESOPHAGUS	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0094	0.0094	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TE1_OESOPHAGUS	1	1	0.0188	TRUE	62	24	1	171	0	FALSE	ACH-000647
NCIH1836_LUNG	SOX5--PTPN22	101	33	SOX5	23645	chr12:23696145:-	PTPN22	49019	chr1:114372651:-	ONLY_REF_SPLICE	YES	5	0	0.96	1	1.6585	0.5419	SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-,PTPN22->chr1:114356433-114414381:-,protein_tyrosine_phosphatase,_non-receptor_type_22	NCIH1836_LUNG	0.96	1	2.2004	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	TIMM23B--LINC00843	71	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1659	0.312	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1836_LUNG	0.99	1	1.4779	TRUE	508	994	45	981	0	FALSE	ACH-000559
NCIH1836_LUNG	ZNF654--HMGB2	45	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7389	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1836_LUNG	1	1	0.7389	TRUE	0	0	0	518	0	FALSE	ACH-000559
NCIH1836_LUNG	PKN2--SOX5	38	27	PKN2	1407	chr1:89150311:+	SOX5	49133	chr12:23696318:-	ONLY_REF_SPLICE	YES	18	6	0.78	0.92	0.624	0.4434	PKN2->chr1:89149905-89301938:+,protein_kinase_N2,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1836_LUNG	0.78	0.92	1.0674	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	RP11-408A13.2--NFIB	41	8	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	58	1	0.46	0.6733	0.1314	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	NCIH1836_LUNG	0.46	1	0.8047	TRUE	0	14	0	20	14	FALSE	ACH-000559
NCIH1836_LUNG	ITPR2--SLC30A7	39	15	ITPR2	2580	chr12:26943090:-	SLC30A7	69563	chr1:101372408:+	ONLY_REF_SPLICE	YES	31	18	0.64	0.75	0.6404	0.2463	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7	NCIH1836_LUNG	0.64	0.75	0.8867	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	RP11-123O10.4--GRIP1	40	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	4	1	0.91	0.6568	0.0493	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1836_LUNG	0.91	1	0.7061	FALSE	416	2512	207	587	0	FALSE	ACH-000559
NCIH1836_LUNG	KANSL1--ARL17B	33	14	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	51	34	0.48	0.58	0.5419	0.2299	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH1836_LUNG	0.48	0.58	0.7718	TRUE	181	1564	124	196	0	FALSE	ACH-000559
NCIH1836_LUNG	LEPR--KIF3C	35	6	LEPR	2252	chr1:65891061:+	KIF3C	46811	chr2:26152932:-	ONLY_REF_SPLICE	YES	1	39	0.98	0.51	0.5747	0.0985	LEPR->chr1:65886248-66107242:+,leptin_receptor,KIF3C->chr2:26149471-26205618:-,kinesin_family_member_3C	NCIH1836_LUNG	0.51	0.98	0.6732	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	CT49--RP11-582E3.2	32	14	CT49	1196	chr5:12575164:+	RP11-582E3.2	13379	chr12:27258191:-	ONLY_REF_SPLICE	YES	35	0	0.57	1	0.5255	0.2299	CT49->chr5:12574969-12804475:+,RP11-582E3.2->chr12:27258084-27314326:-	NCIH1836_LUNG	0.57	1	0.7554	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-CO1	34	1	MT-ND4	1359	chrM:11118:+	MT-CO1	6032	chrM:6557:+	INCL_NON_REF_SPLICE	YES	11224	16121	0	0	0.5583	0.0164	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	0	0	0.5747	FALSE	19	92	11	16	0	FALSE	ACH-000559
NCIH1836_LUNG	TIMM23--RP11-464F9.1	34	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5583	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1836_LUNG	1	1	0.5583	TRUE	519	3926	326	965	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND6--MT-TE	26	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4269	0.0328	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1836_LUNG	1	1	0.4597	FALSE	499	1288	110	792	0	FALSE	ACH-000559
NCIH1836_LUNG	SOX5--PTPN22	21	20	SOX5	23645	chr12:23696145:-	PTPN22	49341	chr1:114372329:-	ONLY_REF_SPLICE	YES	5	1	0.89	0.98	0.3448	0.3284	SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-,PTPN22->chr1:114356433-114414381:-,protein_tyrosine_phosphatase,_non-receptor_type_22	NCIH1836_LUNG	0.89	0.98	0.6732	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-RNR2	23	7	MT-ND4	1947	chrM:11706:+	MT-RNR2	5392	chrM:1684:+	INCL_NON_REF_SPLICE	YES	10668	0	0	1	0.3777	0.1149	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1836_LUNG	0	1	0.4926	FALSE	13	19	3	21	0	FALSE	ACH-000559
NCIH1836_LUNG	DTD1--RALGAPA2	21	6	DTD1	2314	chr20:18574465:+	RALGAPA2	56788	chr20:20392792:-	ONLY_REF_SPLICE	YES	158	47	0.15	0.36	0.3448	0.0985	DTD1->D-tyrosyl-tRNA_deacylase_1,chr20:18568537-18744561:+,RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-	NCIH1836_LUNG	0.15	0.36	0.4433	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	MARCH6--FILIP1L	19	10	MARCH6	21956	chr5:10414614:+	FILIP1L	43162	chr3:99649874:-	ONLY_REF_SPLICE	YES	224	0	0.11	1	0.312	0.1642	MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6,FILIP1L->chr3:99548985-99833357:-,filamin_A_interacting_protein_1-like	NCIH1836_LUNG	0.11	1	0.4762	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	MT-TA--MT-TC	20	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3284	0.0164	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1836_LUNG	1	1	0.3448	FALSE	462	80	0	856	0	FALSE	ACH-000559
NCIH1836_LUNG	LTBP1--NEGR1	15	19	LTBP1	6941	chr2:33360027:+	NEGR1	48705	chr1:72241980:-	ONLY_REF_SPLICE	YES	0	64	1	0.35	0.2463	0.312	LTBP1->chr2:33172039-33624576:+,latent_transforming_growth_factor_beta_binding_protein_1,NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1	NCIH1836_LUNG	0.35	1	0.5583	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	FAR2--RP4-665J23.1	16	10	FAR2	1305	chr12:29302340:+	RP4-665J23.1	33448	chr1:91248980:-	ONLY_REF_SPLICE	YES	1	1	0.96	0.96	0.2627	0.1642	FAR2->chr12:29302036-29493913:+,fatty_acyl-CoA_reductase_2,RP4-665J23.1->chr1:91248543-91317207:-	NCIH1836_LUNG	0.96	0.96	0.4269	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	NFATC3--CDH1	15	6	NFATC3	16832	chr16:68225678:+	CDH1	33793	chr16:68835573:+	ONLY_REF_SPLICE	YES	33	83	0.39	0.2	0.2463	0.0985	NFATC3->Oncogene{Bushman},chr16:68118654-68263162:+,nuclear_factor_of_activated_T-cells_3,CDH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cadherin_1,chr16:68771128-68869451:+	NCIH1836_LUNG	0.2	0.39	0.3448	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	MT-ND6--MT-TE	11	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1806	0.2627	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1836_LUNG	0.96	1	0.4433	FALSE	499	1288	110	792	0	FALSE	ACH-000559
NCIH1836_LUNG	AP000525.9--LA16c-60G3.6	13	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2135	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH1836_LUNG	1	1	0.2135	TRUE	0	42	0	133	42	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-ATP6	12	1	MT-ND4	1209	chrM:10968:+	MT-ATP6	5317	chrM:8465:+	INCL_NON_REF_SPLICE	NO	8227	0	0	1	0.1971	0.0164	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1836_LUNG	0	1	0.2135	FALSE	21	91	18	8	0	FALSE	ACH-000559
NCIH1836_LUNG	AL589743.1--RP11-536C10.17	12	0	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1971	0	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	NCIH1836_LUNG	1	1	0.1971	TRUE	0	33	0	45	33	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-RNR2	10	6	MT-ND4	1843	chrM:11602:+	MT-RNR2	5933	chrM:2225:+	INCL_NON_REF_SPLICE	YES	9926	5938	0	0	0.1642	0.0985	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1836_LUNG	0	0	0.2627	FALSE	13	19	3	21	0	FALSE	ACH-000559
NCIH1836_LUNG	ZFP69B--BEND5	10	5	ZFP69B	1074	chr1:40915847:+	BEND5	15270	chr1:49202124:-	ONLY_REF_SPLICE	YES	0	17	1	0.47	0.1642	0.0821	ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	NCIH1836_LUNG	0.47	1	0.2463	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	CT49--C12orf71	9	5	CT49	1196	chr5:12575164:+	C12orf71	11919	chr12:27234400:-	ONLY_REF_SPLICE	YES	35	8	0.29	0.64	0.1478	0.0821	CT49->chr5:12574969-12804475:+,C12orf71->chr12:27233991-27235447:-,chromosome_12_open_reading_frame_71	NCIH1836_LUNG	0.29	0.64	0.2299	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-ATP6	9	2	MT-ND4	1515	chrM:11274:+	MT-ATP6	5873	chrM:9021:+	INCL_NON_REF_SPLICE	NO	11216	4714	0	0	0.1478	0.0328	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1836_LUNG	0	0	0.1806	FALSE	21	137	19	8	0	FALSE	ACH-000559
NCIH1836_LUNG	AC027612.3--AP000345.1	9	1	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.1478	0.0164	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH1836_LUNG	0.83	1	0.1642	TRUE	0	0	0	11	0	TRUE	ACH-000559
NCIH1836_LUNG	FAM134C--NLE1	8	3	FAM134C	2538	chr17:40761104:-	NLE1	18212	chr17:33469141:-	ONLY_REF_SPLICE	YES	34	10	0.24	0.52	0.1314	0.0493	FAM134C->chr17:40731531-40762641:-,family_with_sequence_similarity_134_member_C,NLE1->Oncogene{Bushman},chr17:33455772-33469334:-,notchless_homolog_1_(Drosophila)	NCIH1836_LUNG	0.24	0.52	0.1807	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	MT-ND6--MT-TE	8	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1314	0.0493	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1836_LUNG	1	1	0.1807	FALSE	499	1288	110	792	0	FALSE	ACH-000559
NCIH1836_LUNG	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1314	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1836_LUNG	1	1	0.1314	FALSE	13	9	0	364	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ATP6--MT-CO1	8	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1314	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	1	1	0.1314	FALSE	183	104	9	328	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-CO1	6	7	MT-ND4	2344	chrM:12103:+	MT-CO1	6021	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	15587	1	0	0.0985	0.1149	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	0	1	0.2134	FALSE	19	91	11	16	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-ATP6	7	2	MT-ND4	1521	chrM:11280:+	MT-ATP6	5879	chrM:9027:+	INCL_NON_REF_SPLICE	NO	11467	4734	0	0	0.1149	0.0328	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1836_LUNG	0	0	0.1477	FALSE	21	137	19	8	0	FALSE	ACH-000559
NCIH1836_LUNG	AP003900.6--AP000345.1	7	1	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1149	0.0164	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1836_LUNG	1	1	0.1313	TRUE	4	17	0	31	0	FALSE	ACH-000559
NCIH1836_LUNG	DIP2B--CTD-2341M24.1	7	0	DIP2B	1256	chr12:50899023:+	CTD-2341M24.1	55665	chr14:86594294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1149	0	DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B,CTD-2341M24.1->chr14:86401054-86596117:+	NCIH1836_LUNG	1	1	0.1149	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	DTD1--RALGAPA2	6	4	DTD1	2314	chr20:18574465:+	RALGAPA2	58950	chr20:20373897:-	ONLY_REF_SPLICE	YES	158	64	0.06	0.14	0.0985	0.0657	DTD1->D-tyrosyl-tRNA_deacylase_1,chr20:18568537-18744561:+,RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-	NCIH1836_LUNG	0.06	0.14	0.1642	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	LTBP1--NEGR1	6	4	LTBP1	5386	chr2:33335818:+	NEGR1	48705	chr1:72241980:-	ONLY_REF_SPLICE	YES	4	64	0.71	0.14	0.0985	0.0657	LTBP1->chr2:33172039-33624576:+,latent_transforming_growth_factor_beta_binding_protein_1,NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1	NCIH1836_LUNG	0.14	0.71	0.1642	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	BEND5--ZFP69B	6	2	BEND5	4254	chr1:49224572:-	ZFP69B	14212	chr1:40922617:+	ONLY_REF_SPLICE	YES	20	23	0.29	0.26	0.0985	0.0328	BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-,ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+	NCIH1836_LUNG	0.26	0.29	0.1313	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-CO1	5	6	MT-ND4	1992	chrM:11751:+	MT-CO1	6021	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10275	15587	0	0	0.0821	0.0985	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	0	0	0.1806	FALSE	19	92	11	16	0	FALSE	ACH-000559
NCIH1836_LUNG	NAA40--MARK2	5	6	NAA40	3740	chr11:63714475:+	MARK2	26689	chr11:63670076:+	ONLY_REF_SPLICE	YES	86	65	0.11	0.14	0.0821	0.0985	LOCAL_REARRANGEMENT:+:[27940],NAA40->N(alpha)-acetyltransferase_40,_NatD_catalytic_subunit,chr11:63706431-63724800:+,MARK2->chr11:63606400-63678491:+,microtubule_affinity_regulating_kinase_2	NCIH1836_LUNG	0.11	0.14	0.1806	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	C15orf57--CBX3	5	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	18	30	0.36	0.25	0.0821	0.0821	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1836_LUNG	0.25	0.36	0.1642	TRUE	267	562	48	632	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-ATP6	6	1	MT-ND4	1477	chrM:11236:+	MT-ATP6	5883	chrM:9031:+	INCL_NON_REF_SPLICE	YES	10432	4739	0	0	0.0985	0.0164	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1836_LUNG	0	0	0.1149	FALSE	21	137	19	8	0	FALSE	ACH-000559
NCIH1836_LUNG	RP11-120D5.1--MID1	5	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	7	1	0.59	0.0821	0.0821	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1836_LUNG	0.59	1	0.1642	FALSE	16	356	14	466	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-ATP6	4	8	MT-ND4	1806	chrM:11565:+	MT-ATP6	5353	chrM:8501:+	INCL_NON_REF_SPLICE	YES	9787	0	0	1	0.0657	0.1314	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1836_LUNG	0	1	0.1971	FALSE	21	137	19	8	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-ATP6	5	4	MT-ND4	1386	chrM:11145:+	MT-ATP6	5477	chrM:8625:+	INCL_NON_REF_SPLICE	YES	11705	3	0	0.75	0.0821	0.0657	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1836_LUNG	0	0.75	0.1478	FALSE	21	137	19	8	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND6--MT-TE	3	12	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0.1971	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1836_LUNG	1	1	0.2464	FALSE	499	1288	110	792	0	FALSE	ACH-000559
NCIH1836_LUNG	RP11-108K3.1--GLDN	5	4	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	3	1	0.75	0.0821	0.0657	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH1836_LUNG	0.75	1	0.1478	FALSE	0	19	0	46	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-CO1	5	3	MT-ND4	1741	chrM:11500:+	MT-CO1	6015	chrM:6540:+	INCL_NON_REF_SPLICE	YES	9525	15215	0	0	0.0821	0.0493	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	0	0	0.1314	FALSE	19	92	11	16	0	FALSE	ACH-000559
NCIH1836_LUNG	NFATC3--CDH1	3	11	NFATC3	22068	chr16:68260462:+	CDH1	33793	chr16:68835573:+	INCL_NON_REF_SPLICE	YES	34	83	0.29	0.14	0.0493	0.1806	NFATC3->Oncogene{Bushman},chr16:68118654-68263162:+,nuclear_factor_of_activated_T-cells_3,CDH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cadherin_1,chr16:68771128-68869451:+	NCIH1836_LUNG	0.14	0.29	0.2299	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	MT-ATP6--MT-CO1	4	6	MT-ATP6	1400	chrM:8926:+	MT-CO1	5381	chrM:6603:+	INCL_NON_REF_SPLICE	YES	7810	15380	0	0	0.0657	0.0985	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	0	0	0.1642	FALSE	183	104	9	328	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ATP6--MT-CO1	5	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7763	15586	0	0	0.0821	0.0328	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	0	0	0.1149	FALSE	183	104	9	328	0	FALSE	ACH-000559
NCIH1836_LUNG	AP003900.6--AP000345.1	5	1	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0821	0.0164	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1836_LUNG	0.86	1	0.0985	TRUE	0	8	0	37	1	FALSE	ACH-000559
NCIH1836_LUNG	MT-ATP6--MT-CO1	5	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	6453	15820	0	0	0.0821	0.0164	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	0	0	0.0985	FALSE	183	104	9	328	0	FALSE	ACH-000559
NCIH1836_LUNG	NDUFA4--PHF14	5	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	567	29	0.01	0.17	0.0821	0.0164	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1836_LUNG	0.01	0.17	0.0985	FALSE	19	32	3	60	0	FALSE	ACH-000559
NCIH1836_LUNG	SCFD2--ZCCHC4	4	5	SCFD2	8976	chr4:53773624:-	ZCCHC4	16329	chr4:25315668:+	ONLY_REF_SPLICE	YES	27	38	0.25	0.19	0.0657	0.0821	SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,ZCCHC4->chr4:25314407-25372005:+,zinc_finger_CCHC-type_containing_4	NCIH1836_LUNG	0.19	0.25	0.1478	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-ATP6	3	8	MT-ND4	1773	chrM:11532:+	MT-ATP6	5339	chrM:8487:+	INCL_NON_REF_SPLICE	NO	9823	0	0	1	0.0493	0.1314	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1836_LUNG	0	1	0.1807	FALSE	21	137	19	8	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-ATP6	3	8	MT-ND4	1783	chrM:11542:+	MT-ATP6	5324	chrM:8472:+	INCL_NON_REF_SPLICE	NO	9857	0	0	1	0.0493	0.1314	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1836_LUNG	0	1	0.1807	FALSE	21	137	19	8	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0821	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1836_LUNG	1	1	0.0821	FALSE	499	1288	110	792	0	FALSE	ACH-000559
NCIH1836_LUNG	STK40--SLC35F6	5	0	STK40	1174	chr1:36851324:-	SLC35F6	21427	chr2:26997119:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0821	0	STK40->chr1:36805225-36851497:-,serine/threonine_kinase_40,SLC35F6->chr2:26987152-27004099:+,solute_carrier_family_35_member_F6	NCIH1836_LUNG	1	1	0.0821	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-ATP6	4	3	MT-ND4	1386	chrM:11145:+	MT-ATP6	5513	chrM:8661:+	INCL_NON_REF_SPLICE	YES	11705	1624	0	0	0.0657	0.0493	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1836_LUNG	0	0	0.115	FALSE	21	137	19	8	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-RNR2	3	7	MT-ND4	2320	chrM:12079:+	MT-RNR2	5926	chrM:2218:+	INCL_NON_REF_SPLICE	YES	1	6085	0.91	0	0.0493	0.1149	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1836_LUNG	0	0.91	0.1642	FALSE	13	18	3	21	0	FALSE	ACH-000559
NCIH1836_LUNG	NCOA1--AC073479.1	4	3	NCOA1	19858	chr2:24933980:+	AC073479.1	37954	chr2:6108718:+	ONLY_REF_SPLICE	YES	72	1	0.09	0.88	0.0657	0.0493	NCOA1->Oncogene{Bushman},chr2:24714783-24993571:+,nuclear_receptor_coactivator_1,AC073479.1->chr2:6072819-6141407:+	NCIH1836_LUNG	0.09	0.88	0.115	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	MARCH6--FILIP1L	3	6	MARCH6	19727	chr5:10411649:+	FILIP1L	43162	chr3:99649874:-	ONLY_REF_SPLICE	YES	299	0	0.03	1	0.0493	0.0985	MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6,FILIP1L->chr3:99548985-99833357:-,filamin_A_interacting_protein_1-like	NCIH1836_LUNG	0.03	1	0.1478	TRUE	0	0	0	1	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-CO1	3	6	MT-ND4	1898	chrM:11657:+	MT-CO1	6061	chrM:6586:+	INCL_NON_REF_SPLICE	NO	10488	15968	0	0	0.0493	0.0985	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	0	0	0.1478	FALSE	19	92	11	16	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-CO1	3	6	MT-ND4	1903	chrM:11662:+	MT-CO1	6015	chrM:6540:+	INCL_NON_REF_SPLICE	NO	10179	15215	0	0	0.0493	0.0985	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	0	0	0.1478	FALSE	19	92	11	16	0	FALSE	ACH-000559
NCIH1836_LUNG	ALPL--C20orf26	4	1	ALPL	1153	chr1:21836010:+	C20orf26	33350	chr20:20147041:+	ONLY_REF_SPLICE	YES	0	3	1	0.62	0.0657	0.0164	ALPL->alkaline_phosphatase,_liver/bone/kidney,chr1:21835858-21904905:+,C20orf26->chr20:20033158-20341346:+	NCIH1836_LUNG	0.62	1	0.0821	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	6471	13869	0	0	0.0657	0.0164	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	0	0	0.0821	FALSE	183	104	9	328	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-ATP6	3	5	MT-ND4	1843	chrM:11602:+	MT-ATP6	5537	chrM:8685:+	INCL_NON_REF_SPLICE	YES	9928	3474	0	0	0.0493	0.0821	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1836_LUNG	0	0	0.1314	FALSE	21	137	19	8	0	FALSE	ACH-000559
NCIH1836_LUNG	UBE2K--WDR19	4	1	UBE2K	1347	chr4:39700010:+	WDR19	46924	chr4:39274600:+	ONLY_REF_SPLICE	YES	48	40	0.09	0.11	0.0657	0.0164	UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,WDR19->WD_repeat_domain_19,chr4:39184024-39287430:+	NCIH1836_LUNG	0.09	0.11	0.0821	TRUE	0	0	0	1	0	FALSE	ACH-000559
NCIH1836_LUNG	AP000525.9--LA16c-60G3.6	4	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0657	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH1836_LUNG	1	1	0.0657	TRUE	0	5	0	18	5	TRUE	ACH-000559
NCIH1836_LUNG	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0657	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1836_LUNG	1	1	0.0657	FALSE	13	9	0	364	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0657	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	1	1	0.0657	FALSE	183	104	9	328	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-ATP6	3	4	MT-ND4	1471	chrM:11230:+	MT-ATP6	5320	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10336	0	0	1	0.0493	0.0657	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1836_LUNG	0	1	0.115	FALSE	21	137	19	8	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-CO1	4	0	MT-ND4	1234	chrM:10993:+	MT-CO1	6016	chrM:6541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0657	0	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	1	1	0.0657	FALSE	19	89	11	16	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-CO1	3	4	MT-ND4	1773	chrM:11532:+	MT-CO1	5916	chrM:6441:+	INCL_NON_REF_SPLICE	YES	9823	14705	0	0	0.0493	0.0657	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	0	0	0.115	FALSE	19	92	11	16	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-RNR2	4	0	MT-ND4	1253	chrM:11012:+	MT-RNR2	5441	chrM:1733:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0657	0	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1836_LUNG	1	1	0.0657	FALSE	13	19	3	21	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-ATP6	3	3	MT-ND4	1984	chrM:11743:+	MT-ATP6	5823	chrM:8971:+	INCL_NON_REF_SPLICE	YES	10135	6737	0	0	0.0493	0.0493	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1836_LUNG	0	0	0.0986	FALSE	21	137	19	8	0	FALSE	ACH-000559
NCIH1836_LUNG	SMAP2--BEND5	3	3	SMAP2	13615	chr1:40882768:+	BEND5	24370	chr1:49202124:-	ONLY_REF_SPLICE	YES	40	17	0.13	0.26	0.0493	0.0493	SMAP2->chr1:40810522-40888998:+,small_ArfGAP2,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	NCIH1836_LUNG	0.13	0.26	0.0986	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	LEPR--KIF3C	2	6	LEPR	2252	chr1:65891061:+	KIF3C	46814	chr2:26152929:-	ONLY_REF_SPLICE	YES	1	35	0.89	0.19	0.0328	0.0985	LEPR->chr1:65886248-66107242:+,leptin_receptor,KIF3C->chr2:26149471-26205618:-,kinesin_family_member_3C	NCIH1836_LUNG	0.19	0.89	0.1313	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	7682	14506	0	0	0.0493	0.0328	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	0	0	0.0821	FALSE	183	104	9	328	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-ATP6	3	2	MT-ND4	1317	chrM:11076:+	MT-ATP6	5353	chrM:8501:+	INCL_NON_REF_SPLICE	YES	11218	0	0	1	0.0493	0.0328	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1836_LUNG	0	1	0.0821	FALSE	21	93	18	8	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-ATP6	3	2	MT-ND4	1269	chrM:11028:+	MT-ATP6	5383	chrM:8531:+	INCL_NON_REF_SPLICE	YES	9497	0	0	1	0.0493	0.0328	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1836_LUNG	0	1	0.0821	FALSE	21	93	18	8	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-CO1	3	2	MT-ND4	1833	chrM:11592:+	MT-CO1	6662	chrM:7187:+	INCL_NON_REF_SPLICE	YES	9511	9728	0	0	0.0493	0.0328	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	0	0	0.0821	FALSE	19	92	11	16	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-RNR2	3	2	MT-ND4	1505	chrM:11264:+	MT-RNR2	5931	chrM:2223:+	INCL_NON_REF_SPLICE	YES	10692	5992	0	0	0.0493	0.0328	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1836_LUNG	0	0	0.0821	FALSE	13	19	3	21	0	FALSE	ACH-000559
NCIH1836_LUNG	RP11-108K3.1--GLDN	3	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.0493	0.0328	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH1836_LUNG	0.71	1	0.0821	FALSE	1	20	0	46	0	FALSE	ACH-000559
NCIH1836_LUNG	RP11-319G9.5--WWOX	3	2	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	39	1	0.11	0.0493	0.0328	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	NCIH1836_LUNG	0.11	1	0.0821	FALSE	154	425	28	76	0	FALSE	ACH-000559
NCIH1836_LUNG	ALPL--C20orf26	3	1	ALPL	1153	chr1:21836010:+	C20orf26	38161	chr20:20168574:+	ONLY_REF_SPLICE	YES	0	3	1	0.57	0.0493	0.0164	ALPL->alkaline_phosphatase,_liver/bone/kidney,chr1:21835858-21904905:+,C20orf26->chr20:20033158-20341346:+	NCIH1836_LUNG	0.57	1	0.0657	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	CMTM8--CMTM7	3	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	49	2	0.08	0.67	0.0493	0.0164	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	NCIH1836_LUNG	0.08	0.67	0.0657	FALSE	118	557	29	88	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	8151	10203	0	0	0.0493	0.0164	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	0	0	0.0657	FALSE	183	104	9	328	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	6559	14333	0	0	0.0493	0.0164	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	0	0	0.0657	FALSE	183	104	9	328	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-ATP6	3	1	MT-ND4	1220	chrM:10979:+	MT-ATP6	5326	chrM:8474:+	INCL_NON_REF_SPLICE	YES	8269	0	0	1	0.0493	0.0164	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1836_LUNG	0	1	0.0657	FALSE	21	91	18	8	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-CO1	3	1	MT-ND4	1534	chrM:11293:+	MT-CO1	6072	chrM:6597:+	INCL_NON_REF_SPLICE	YES	11750	15591	0	0	0.0493	0.0164	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	0	0	0.0657	FALSE	19	92	11	16	0	FALSE	ACH-000559
NCIH1836_LUNG	RP11-123O10.4--GRIP1	3	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	5	1	0.44	0.0493	0.0164	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1836_LUNG	0.44	1	0.0657	FALSE	93	270	15	244	0	FALSE	ACH-000559
NCIH1836_LUNG	ATP8A2--CDK8	3	0	ATP8A2	2365	chr13:26043259:+	CDK8	55098	chr13:26911704:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0493	0	ATP8A2->ATPase_phospholipid_transporting_8A2,chr13:25946209-26599989:+,CDK8->ArcherDX_panel,FoundationOne_panel,chr13:26828276-26979375:+,cyclin-dependent_kinase_8	NCIH1836_LUNG	1	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	LRRC40--AC019048.1	3	0	LRRC40	1231	chr1:70671073:-	AC019048.1	23208	chr2:7203045:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0493	0	LRRC40->chr1:70610488-70671303:-,leucine_rich_repeat_containing_40,AC019048.1->chr2:7202858-7218011:-	NCIH1836_LUNG	1	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5226	chrM:6448:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1836_LUNG	1	1	0.0493	FALSE	183	104	9	328	0	FALSE	ACH-000559
NCIH1836_LUNG	MT-ND4--MT-ATP6	3	0	MT-ND4	1239	chrM:10998:+	MT-ATP6	5778	chrM:8926:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1836_LUNG	1	1	0.0493	FALSE	21	93	18	8	0	FALSE	ACH-000559
NCIH1836_LUNG	RP11-108K3.1--GLDN	2	4	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	3	1	0.67	0.0328	0.0657	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH1836_LUNG	0.67	1	0.0985	FALSE	0	30	1	55	0	FALSE	ACH-000559
NCIH1836_LUNG	GDAP1--RP11-758M4.1	2	3	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	19325	chr8:75614614:+	ONLY_REF_SPLICE	YES	108	1	0.04	0.83	0.0328	0.0493	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH1836_LUNG	0.04	0.83	0.0821	TRUE	0	1	0	4	0	FALSE	ACH-000559
NCIH1836_LUNG	GDAP1--RP11-758M4.1	2	3	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	108	0	0.04	1	0.0328	0.0493	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH1836_LUNG	0.04	1	0.0821	TRUE	7	28	0	43	0	FALSE	ACH-000559
NCIH1836_LUNG	VTI1A--RP11-57H14.3	2	3	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	38	0	0.12	1	0.0328	0.0493	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH1836_LUNG	0.12	1	0.0821	FALSE	272	151	14	158	0	FALSE	ACH-000559
NCIH1836_LUNG	ALPL--C20orf26	2	2	ALPL	1153	chr1:21836010:+	C20orf26	32171	chr20:20144694:+	ONLY_REF_SPLICE	YES	0	6	1	0.4	0.0328	0.0328	ALPL->alkaline_phosphatase,_liver/bone/kidney,chr1:21835858-21904905:+,C20orf26->chr20:20033158-20341346:+	NCIH1836_LUNG	0.4	1	0.0656	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	CT49--TM7SF3	2	2	CT49	1196	chr5:12575164:+	TM7SF3	13549	chr12:27156323:-	ONLY_REF_SPLICE	YES	35	63	0.1	0.06	0.0328	0.0328	CT49->chr5:12574969-12804475:+,TM7SF3->chr12:27126128-27167367:-,transmembrane_7_superfamily_member_3	NCIH1836_LUNG	0.06	0.1	0.0656	TRUE	0	0	0	1	0	FALSE	ACH-000559
NCIH1836_LUNG	MARCH6--FILIP1L	2	2	MARCH6	18522	chr5:10410388:+	FILIP1L	43162	chr3:99649874:-	ONLY_REF_SPLICE	YES	277	0	0.01	1	0.0328	0.0328	MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6,FILIP1L->chr3:99548985-99833357:-,filamin_A_interacting_protein_1-like	NCIH1836_LUNG	0.01	1	0.0656	FALSE	0	0	0	1	0	FALSE	ACH-000559
NCIH1836_LUNG	SCFD2--ZCCHC4	2	2	SCFD2	8976	chr4:53773624:-	ZCCHC4	17448	chr4:25316940:+	ONLY_REF_SPLICE	YES	27	39	0.13	0.09	0.0328	0.0328	SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,ZCCHC4->chr4:25314407-25372005:+,zinc_finger_CCHC-type_containing_4	NCIH1836_LUNG	0.09	0.13	0.0656	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	SCFD2--ZCCHC4	2	1	SCFD2	7841	chr4:53786892:-	ZCCHC4	17448	chr4:25316940:+	ONLY_REF_SPLICE	YES	30	39	0.09	0.07	0.0328	0.0164	SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,ZCCHC4->chr4:25314407-25372005:+,zinc_finger_CCHC-type_containing_4	NCIH1836_LUNG	0.07	0.09	0.0492	TRUE	0	0	0	1	0	FALSE	ACH-000559
NCIH1836_LUNG	LRRC40--AC019048.1	2	0	LRRC40	2413	chr1:70654775:-	AC019048.1	23208	chr2:7203045:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0328	0	LRRC40->chr1:70610488-70671303:-,leucine_rich_repeat_containing_40,AC019048.1->chr2:7202858-7218011:-	NCIH1836_LUNG	1	1	0.0328	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	RP11-412P11.1--GBA3	2	0	RP11-412P11.1	3285	chr4:23004866:+	GBA3	14744	chr4:22737604:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0328	0	RP11-412P11.1->chr4:22999174-23058485:+,GBA3->chr4:22694537-22821198:+,glucosylceramidase_beta_3_(gene/pseudogene)	NCIH1836_LUNG	1	1	0.0328	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	RP11-463M16.4--FAM192A	2	0	RP11-463M16.4	2476	chr17:46969609:-	FAM192A	13889	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0328	0	RP11-463M16.4->chr17:46952222-46986345:-,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	NCIH1836_LUNG	1	1	0.0328	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	ITPR2--SLC30A7	1	3	ITPR2	2580	chr12:26943090:-	SLC30A7	71726	chr1:101377668:+	ONLY_REF_SPLICE	YES	31	14	0.11	0.22	0.0164	0.0493	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7	NCIH1836_LUNG	0.11	0.22	0.0657	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	RP11-120D5.1--MID1	1	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	7	0.8	0.36	0.0164	0.0493	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1836_LUNG	0.36	0.8	0.0657	FALSE	0	48	1	163	0	FALSE	ACH-000559
NCIH1836_LUNG	BEND5--ZFP69B	1	2	BEND5	5403	chr1:49208295:-	ZFP69B	14212	chr1:40922617:+	ONLY_REF_SPLICE	YES	18	23	0.14	0.12	0.0164	0.0328	BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-,ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+	NCIH1836_LUNG	0.12	0.14	0.0492	TRUE	0	0	0	1	0	TRUE	ACH-000559
NCIH1836_LUNG	KANSL1--ARL17B	1	2	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	46	34	0.06	0.08	0.0164	0.0328	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH1836_LUNG	0.06	0.08	0.0492	TRUE	105	90	7	93	0	FALSE	ACH-000559
NCIH1836_LUNG	ARFRP1--MLLT1	1	1	ARFRP1	2669	chr20:62337709:-	MLLT1	22185	chr19:6216524:-	ONLY_REF_SPLICE	YES	82	121	0.02	0.02	0.0164	0.0164	ARFRP1->ADP_ribosylation_factor_related_protein_1,ArcherDX_panel,FoundationOne_panel,chr20:62329996-62339377:-,MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1	NCIH1836_LUNG	0.02	0.02	0.0328	TRUE	0	0	0	1	0	FALSE	ACH-000559
NCIH1836_LUNG	CTPS1--BMP8A	1	1	CTPS1	1495	chr1:41445501:+	BMP8A	28495	chr1:39976846:+	ONLY_REF_SPLICE	YES	575	4	0	0.33	0.0164	0.0164	CTPS1->CTP_synthase_1,chr1:41445007-41478235:+,BMP8A->bone_morphogenetic_protein_8a,chr1:39957318-39991607:+	NCIH1836_LUNG	0	0.33	0.0328	FALSE	0	0	0	1	0	FALSE	ACH-000559
NCIH1836_LUNG	PICALM--SYTL2	1	1	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	114	48	0.02	0.04	0.0164	0.0164	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	NCIH1836_LUNG	0.02	0.04	0.0328	TRUE	4	2	0	20	0	FALSE	ACH-000559
NCIH1836_LUNG	RBBP4--USP9X	1	1	RBBP4	3511	chr1:33123173:+	USP9X	60476	chrX:41082470:+	ONLY_REF_SPLICE	NO	483	78	0	0.03	0.0164	0.0164	RBBP4->chr1:33116743-33151812:+,retinoblastoma_binding_protein_4,USP9X->chrX:40944888-41095832:+,ubiquitin_specific_peptidase_9,_X-linked	NCIH1836_LUNG	0	0.03	0.0328	FALSE	0	0	0	1	0	FALSE	ACH-000559
NCIH1836_LUNG	SPAG16--VWC2L	1	1	SPAG16	24747	chr2:215013990:+	VWC2L	35073	chr2:215278838:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0.0164	NEIGHBORS[564],SPAG16->chr2:214149113-215275225:+,sperm_associated_antigen_16,VWC2L->chr2:215275789-215443683:+,von_Willebrand_factor_C_domain_containing_protein_2-like	NCIH1836_LUNG	1	1	0.0328	FALSE	3	1	0	1	0	FALSE	ACH-000559
NCIH1836_LUNG	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	YES	38	0	0.05	1	0.0164	0.0164	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH1836_LUNG	0.05	1	0.0328	FALSE	28	14	1	23	0	FALSE	ACH-000559
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	331	138	MLLT10	2720	chr10:21827841:+	PICALM	59377	chr11:85685855:-	ONLY_REF_SPLICE	YES	38	99	0.93	0.83	3.292	1.3725	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.93	4.6645	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNS3--H2AFV	217	51	TNS3	9815	chr7:47520701:-	H2AFV	49743	chr7:44882953:-	ONLY_REF_SPLICE	YES	6	53	0.98	0.83	2.1582	0.5072	TNS3->chr7:47314752-47622156:-,tensin_3,H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.98	2.6654	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	153	181	MLLT10	2720	chr10:21827841:+	PICALM	58317	chr11:85687725:-	ONLY_REF_SPLICE	YES	38	98	0.9	0.77	1.5217	1.8001	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.9	3.3218	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	92	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.915	0.189	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.104	TRUE	508	994	45	981	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--MLLT10	68	13	PICALM	19502	chr11:85692172:-	MLLT10	38328	chr10:21875223:+	ONLY_REF_SPLICE	YES	94	24	0.46	0.77	0.6763	0.1293	Mitelman{ALL=2},YOSHIHARA_TCGA_num_samples[LAML:2],{Klijn_CCL:Lymphoid=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.77	0.8056	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCTD7--DYNC1I1	63	12	KCTD7	14247	chr7:66240380:+	DYNC1I1	38048	chr7:95606824:+	ONLY_REF_SPLICE	YES	40	0	0.65	1	0.6266	0.1193	KCTD7->chr7:66093868-66276446:+,potassium_channel_tetramerization_domain_containing_7,DYNC1I1->chr7:95401866-95739634:+,dynein_cytoplasmic_1_intermediate_chain_1	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	0.7459	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	55	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	197	12	0.22	0.83	0.547	0.0199	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.83	0.5669	TRUE	519	3926	326	965	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	4	182	MLLT10	4977	chr10:21840850:+	PICALM	58317	chr11:85687725:-	ONLY_REF_SPLICE	YES	38	98	0.83	0.65	0.0398	1.8101	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.83	1.8499	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	46	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4575	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4575	TRUE	0	0	0	518	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	32	51	MLLT10	2720	chr10:21827841:+	PICALM	61585	chr11:85670103:-	ONLY_REF_SPLICE	YES	38	144	0.69	0.37	0.3183	0.5072	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.69	0.8255	TRUE	0	0	0	2	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	42	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4177	0.0398	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4575	FALSE	462	80	0	856	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	40	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3978	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3978	FALSE	499	1288	110	792	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1DP3--FRY	37	11	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	2	7	0.96	0.87	0.368	0.1094	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	0.96	0.4774	FALSE	20	24	2	21	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MKLN1-AS1--STEAP4	32	5	MKLN1-AS1	13605	chr7:130630479:-	STEAP4	21462	chr7:87913586:-	ONLY_REF_SPLICE	YES	39	0	0.49	1	0.3183	0.0497	MKLN1-AS1->chr7:130626519-130794935:-,STEAP4->STEAP4_metalloreductase,chr7:87905744-87936206:-	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	1	0.368	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OR51S1--TP53I11	32	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3183	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3183	TRUE	402	216	10	229	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKCZ--CAMTA1	27	8	PRKCZ	32550	chr1:2116137:+	CAMTA1	38606	chr1:6880241:+	ONLY_REF_SPLICE	YES	9	57	0.8	0.38	0.2685	0.0796	PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta,CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.8	0.3481	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTF2IRD2--RP5-945F2.2	27	5	GTF2IRD2	4710	chr7:74239462:-	RP5-945F2.2	25763	chr7:67583542:+	ONLY_REF_SPLICE	YES	44	0	0.42	1	0.2685	0.0497	GTF2IRD2->GTF2I_repeat_domain_containing_2,chr7:74210483-74267847:-,RP5-945F2.2->chr7:67556210-67584196:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.3182	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	88	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	1	0.98	0.99	0.0398	0.8752	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	0.99	0.915	FALSE	344	821	44	306	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTF2IRD2--RP5-945F2.2	20	10	GTF2IRD2	5894	chr7:74237152:-	RP5-945F2.2	25763	chr7:67583542:+	ONLY_REF_SPLICE	YES	36	0	0.45	1	0.1989	0.0995	GTF2IRD2->GTF2I_repeat_domain_containing_2,chr7:74210483-74267847:-,RP5-945F2.2->chr7:67556210-67584196:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	1	0.2984	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	20	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1989	0.0597	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.2586	FALSE	499	1288	110	792	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNAI2--RBM6	20	2	GNAI2	1902	chr3:50264625:+	RBM6	31078	chr3:50085678:+	ONLY_REF_SPLICE	YES	2	77	0.92	0.22	0.1989	0.0199	GNAI2->G_protein_subunit_alpha_i2,Oncogene{Bushman},chr3:50263724-50296787:+,RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.92	0.2188	TRUE	0	1	0	1	1	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	12	25	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	121	0	0.23	1	0.1193	0.2486	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.3679	FALSE	344	827	44	306	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	39	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	1	0.98	0.98	0.0696	0.3879	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	0.98	0.4575	FALSE	189	492	56	216	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNS3--H2AFV	7	37	TNS3	8632	chr7:47546505:-	H2AFV	49743	chr7:44882953:-	ONLY_REF_SPLICE	YES	7	53	0.86	0.45	0.0696	0.368	TNS3->chr7:47314752-47622156:-,tensin_3,H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.86	0.4376	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1591	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1591	FALSE	499	1288	110	792	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCTD7--DYNC1I1	11	19	KCTD7	15414	chr7:66248828:+	DYNC1I1	38048	chr7:95606824:+	ONLY_REF_SPLICE	YES	19	0	0.61	1	0.1094	0.189	KCTD7->chr7:66093868-66276446:+,potassium_channel_tetramerization_domain_containing_7,DYNC1I1->chr7:95401866-95739634:+,dynein_cytoplasmic_1_intermediate_chain_1	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	1	0.2984	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	3	51	MLLT10	1640	chr10:21823733:+	PICALM	59377	chr11:85685855:-	ONLY_REF_SPLICE	YES	33	99	0.62	0.35	0.0298	0.5072	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.62	0.537	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	14	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	8	0.95	0.71	0.1392	0.0597	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.95	0.1989	FALSE	515	4851	409	746	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	14	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1392	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1392	TRUE	0	0	0	434	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	12	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	43	6	0.3	0.75	0.1193	0.0597	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.75	0.179	TRUE	267	562	48	632	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNAI2--RBM6	11	9	GNAI2	4836	chr3:50268430:+	RBM6	31078	chr3:50085678:+	ONLY_REF_SPLICE	YES	19	77	0.51	0.21	0.1094	0.0895	GNAI2->G_protein_subunit_alpha_i2,Oncogene{Bushman},chr3:50263724-50296787:+,RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.51	0.1989	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNS3--H2AFV	8	21	TNS3	9815	chr7:47520701:-	H2AFV	50821	chr7:44880611:-	ONLY_REF_SPLICE	YES	6	525	0.83	0.05	0.0796	0.2089	TNS3->chr7:47314752-47622156:-,tensin_3,H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.83	0.2885	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	12	3	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	3	1	0.83	0.1193	0.0298	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.1491	TRUE	347	1186	183	220	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	38	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	5135	0	0.01	1	0.0298	0.3779	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.4077	FALSE	328	800	43	304	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	38	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	212	0	0.16	1	0.0298	0.3779	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.4077	FALSE	344	827	44	306	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	11	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1094	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1094	FALSE	189	492	56	216	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCTD7--DYNC1I1	6	19	KCTD7	15414	chr7:66248828:+	DYNC1I1	38050	chr7:95606826:+	INCL_NON_REF_SPLICE	YES	19	0	0.57	1	0.0597	0.189	KCTD7->chr7:66093868-66276446:+,potassium_channel_tetramerization_domain_containing_7,DYNC1I1->chr7:95401866-95739634:+,dynein_cytoplasmic_1_intermediate_chain_1	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.2487	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	25	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9	0	0.76	1	0.0398	0.2486	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.2884	FALSE	344	826	44	306	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	9	4	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0895	0.0398	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1293	TRUE	0	1	0	84	1	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	12	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0696	0.1193	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.1889	FALSE	189	492	56	216	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0895	0.0398	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1293	FALSE	499	1288	110	792	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	8	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	38	6	0.24	0.67	0.0796	0.0398	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.67	0.1194	TRUE	267	562	48	632	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	7	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0696	0.0696	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1392	FALSE	499	1288	110	792	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	7	4	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0696	0.0398	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1094	TRUE	0	1	0	84	1	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	8	0	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0796	0	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0796	TRUE	5	4	0	46	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	10	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0.0995	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1492	FALSE	189	492	56	216	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	6	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	8	0.92	0.6	0.0597	0.0597	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.92	0.1194	FALSE	467	2173	244	435	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--MLLT10	4	13	PICALM	19502	chr11:85692172:-	MLLT10	37276	chr10:21860904:+	ONLY_REF_SPLICE	YES	94	27	0.15	0.39	0.0398	0.1293	Mitelman{ALL=2},YOSHIHARA_TCGA_num_samples[LAML:2],{Klijn_CCL:Lymphoid=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.39	0.1691	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIATL1--RP11-307E17.8	7	0	HIATL1	4664	chr9:97200810:+	RP11-307E17.8	19630	chr9:97101118:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0696	0	GTEx_FI:{Small_Intestine=[count:1=pct:1.8],Skin=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:+:[13603],HIATL1->chr9:97136833-97223324:+,RP11-307E17.8->chr9:97094758-97123230:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0696	TRUE	3	6	0	6	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	7	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0696	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0696	FALSE	272	151	14	158	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0.0597	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1094	FALSE	462	80	0	856	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0597	0.0099	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0696	FALSE	189	492	56	216	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--MLLT10	3	13	PICALM	19502	chr11:85692172:-	MLLT10	35094	chr10:21845572:+	ONLY_REF_SPLICE	YES	94	38	0.15	0.3	0.0298	0.1293	Mitelman{ALL=2},YOSHIHARA_TCGA_num_samples[LAML:2],{Klijn_CCL:Lymphoid=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.3	0.1591	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	12	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	7	0	0.68	1	0.0298	0.1193	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	1	0.1491	FALSE	344	826	44	306	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	12	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	14	0	0.52	1	0.0298	0.1193	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	1	0.1491	FALSE	344	827	44	306	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0597	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0597	FALSE	462	80	0	856	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	6	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0597	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0597	TRUE	477	1352	189	275	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	5	2	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	49	0	0.12	1	0.0497	0.0199	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.0696	TRUE	61	154	6	19	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	5	1	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	6	0	0.5	1	0.0497	0.0099	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0596	TRUE	0	0	0	81	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	5	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	654	0	0.01	1	0.0497	0.0099	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0596	FALSE	0	0	0	189	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	4	4	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0.0398	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0796	TRUE	0	1	0	84	1	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0.0398	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0796	FALSE	462	80	0	856	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	7	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0298	0.0696	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.0994	FALSE	499	1288	110	792	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.9	1	0.0298	0.0597	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.0895	FALSE	407	2205	196	549	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0398	FALSE	189	492	56	216	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	2	1	0.78	0.88	0.0298	0.0398	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.88	0.0696	FALSE	189	492	56	216	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	4	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0.0398	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0696	FALSE	462	80	0	856	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--MLLT10	2	7	PICALM	19502	chr11:85692172:-	MLLT10	39383	chr10:21884260:+	ONLY_REF_SPLICE	YES	94	28	0.09	0.24	0.0199	0.0696	Mitelman{ALL=2},YOSHIHARA_TCGA_num_samples[LAML:2],{Klijn_CCL:Lymphoid=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.24	0.0895	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTF2IRD2--RP5-945F2.2	1	10	GTF2IRD2	6091	chr7:74236955:-	RP5-945F2.2	25763	chr7:67583542:+	ONLY_REF_SPLICE	NO	30	0	0.27	1	0.0099	0.0995	GTF2IRD2->GTF2I_repeat_domain_containing_2,chr7:74210483-74267847:-,RP5-945F2.2->chr7:67556210-67584196:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.1094	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	3	2	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	49	0	0.09	1	0.0298	0.0199	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.0497	TRUE	30	67	4	15	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNS3--H2AFV	1	10	TNS3	9815	chr7:47520701:-	H2AFV	51935	chr7:44875257:-	ONLY_REF_SPLICE	YES	6	978	0.65	0.01	0.0099	0.0995	TNS3->chr7:47314752-47622156:-,tensin_3,H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.65	0.1094	TRUE	0	0	0	1	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	1	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	11	0	0.27	1	0.0298	0.0099	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.0397	TRUE	0	0	0	81	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GGACT--PCCA	3	1	GGACT	3102	chr13:101236079:-	PCCA	40151	chr13:101179929:+	ONLY_REF_SPLICE	YES	94	238	0.04	0.02	0.0298	0.0099	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0397	TRUE	7	15	0	10	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	3	1	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0.0099	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	FALSE	0	26	0	50	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MKLN1-AS1--STEAP4	2	5	MKLN1-AS1	13605	chr7:130630479:-	STEAP4	20363	chr7:87920329:-	ONLY_REF_SPLICE	YES	39	0	0.15	1	0.0199	0.0497	MKLN1-AS1->chr7:130626519-130794935:-,STEAP4->STEAP4_metalloreductase,chr7:87905744-87936206:-	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0298	FALSE	344	821	44	306	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0298	FALSE	499	1288	110	792	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0298	FALSE	499	1288	110	792	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1023	chrM:5633:-	MT-TC	4115	chrM:5781:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0298	FALSE	462	80	0	856	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-112J1.2--DAAM1	3	0	RP11-112J1.2	6942	chr14:59415059:+	DAAM1	13257	chr14:59730159:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0	RP11-112J1.2->chr14:59294952-59484046:+,DAAM1->chr14:59655364-59838123:+,dishevelled_associated_activator_of_morphogenesis_1	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0298	TRUE	0	0	0	2	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	3	0	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0298	FALSE	141	264	50	91	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	3	0	VTI1A	13856	chr10:114428768:+	RP11-57H14.3	23363	chr10:114648494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0298	FALSE	272	151	14	158	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1DP3--FRY	2	3	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	11	7	0.31	0.42	0.0199	0.0298	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.42	0.0497	FALSE	18	26	2	21	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	2	3	RP11-353N4.6	7562	chr1:149591237:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	45	0	0.1	1	0.0199	0.0298	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.0497	TRUE	2	9	0	4	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNAI2--RBM6	2	2	GNAI2	1902	chr3:50264625:+	RBM6	28868	chr3:50036873:+	ONLY_REF_SPLICE	YES	2	63	0.67	0.06	0.0199	0.0199	GNAI2->G_protein_subunit_alpha_i2,Oncogene{Bushman},chr3:50263724-50296787:+,RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.67	0.0398	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.88	1	0.0099	0.0597	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0696	FALSE	192	492	57	212	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	2	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	11	1	0.21	0.0199	0.0099	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.0298	TRUE	15	36	8	26	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EFCAB11--RP11-944C7.1	2	1	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	27	0	0.1	1	0.0199	0.0099	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.0298	TRUE	31	91	1	18	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC14--AHSA2	2	0	CCDC14	4735	chr3:123675587:-	AHSA2	31000	chr2:61413581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	47891	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	1	3	0	10	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	2	8	0	24	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC12A--LUC7L2	2	0	CLEC12A	6135	chr12:10134728:+	LUC7L2	25103	chr7:139106909:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	CLEC12A->C-type_lectin_domain_family_12_member_A,chr12:10103915-10148293:+,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF4EBP1--CHMP7	2	0	EIF4EBP1	1378	chr8:37888236:+	CHMP7	9282	chr8:23103769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	EIF4EBP1->Oncogene{Bushman},chr8:37887859-37917883:+,eukaryotic_translation_initiation_factor_4E_binding_protein_1,CHMP7->charged_multivesicular_body_protein_7,chr8:23101150-23119512:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIATL1--RP11-307E17.8	2	0	HIATL1	4664	chr9:97200810:+	RP11-307E17.8	20815	chr9:97121767:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_FI:{Small_Intestine=[count:1=pct:1.8],Skin=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:+:[13603],HIATL1->chr9:97136833-97223324:+,RP11-307E17.8->chr9:97094758-97123230:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	1	0	5	1	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	2	0	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	5	12	0	42	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEPSECS--CHEK1	2	0	SEPSECS	1327	chr4:25161878:-	CHEK1	31675	chr11:125525120:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	SEPSECS->Sep_(O-phosphoserine)_tRNA:Sec_(selenocysteine)_tRNA_synthase,chr4:25121627-25162204:-,CHEK1->ArcherDX_panel,FoundationOne_panel,checkpoint_kinase_1,chr11:125495036-125546150:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TP53BP2--LZIC	2	0	TP53BP2	20078	chr1:223976710:-	LZIC	35452	chr1:9982416:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	TP53BP2->Oncogene{Bushman},chr1:223967601-224033674:-,tumor_protein_p53_binding_protein_2,LZIC->chr1:9982173-10003465:-,leucine_zipper_and_CTNNBIP1_domain_containing	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XIAP--NCAPD2	2	0	XIAP	1570	chrX:122994143:+	NCAPD2	26209	chr12:6625994:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	XIAP->X-linked_inhibitor_of_apoptosis,chrX:122993574-123047829:+,NCAPD2->Oncogene{Bushman},chr12:6602522-6641121:+,non-SMC_condensin_I_complex_subunit_D2	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHCHD3--EXOC4	1	2	CHCHD3	7933	chr7:132659929:-	EXOC4	23855	chr7:132973676:+	ONLY_REF_SPLICE	NO	361	131	0.01	0.02	0.0099	0.0199	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0298	FALSE	0	0	0	2	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTF2IRD2--RP5-945F2.2	1	2	GTF2IRD2	3428	chr7:74247928:-	RP5-945F2.2	25763	chr7:67583542:+	ONLY_REF_SPLICE	YES	67	0	0.04	1	0.0099	0.0199	GTF2IRD2->GTF2I_repeat_domain_containing_2,chr7:74210483-74267847:-,RP5-945F2.2->chr7:67556210-67584196:+	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0298	TRUE	0	0	0	1	0	TRUE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHCHD3--EXOC4	1	1	CHCHD3	2325	chr7:132754902:-	EXOC4	25050	chr7:132990631:+	ONLY_REF_SPLICE	NO	413	140	0	0.01	0.0099	0.0099	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHCHD3--EXOC4	1	1	CHCHD3	7933	chr7:132659929:-	EXOC4	32133	chr7:133160082:+	ONLY_REF_SPLICE	YES	361	119	0.01	0.02	0.0099	0.0099	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0198	FALSE	0	0	0	4	0	FALSE	ACH-000770
P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GGACT--PCCA	1	1	GGACT	3102	chr13:101236079:-	PCCA	20075	chr13:100888096:+	ONLY_REF_SPLICE	YES	94	73	0.02	0.03	0.0099	0.0099	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	P31FUJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000770
SW1417_LARGE_INTESTINE	QKI--WDR27	86	31	QKI	9463	chr6:163899928:+	WDR27	64695	chr6:169857729:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	1.3774	0.4965	QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,WDR27->WD_repeat_domain_27,chr6:169857307-170102159:-	SW1417_LARGE_INTESTINE	0.99	1	1.8739	TRUE	0	0	0	1	0	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	TIMM23B--LINC00843	84	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3454	0.4324	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SW1417_LARGE_INTESTINE	1	1	1.7778	TRUE	508	994	45	981	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-TA--MT-TN	58	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.929	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SW1417_LARGE_INTESTINE	1	1	0.929	FALSE	369	2501	205	193	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	HDDC2--SRPK1	37	22	HDDC2	3774	chr6:125619860:-	SRPK1	34405	chr6:35810381:-	ONLY_REF_SPLICE	YES	84	63	0.41	0.48	0.5926	0.3524	{Klijn_CCL:Colo-Rectal=1},HDDC2->HD_domain_containing_2,chr6:125541108-125623282:-,SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-	SW1417_LARGE_INTESTINE	0.41	0.48	0.945	TRUE	0	0	0	1	0	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	TIMM23--RP11-464F9.1	40	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	203	4	0.17	0.91	0.6407	0.048	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SW1417_LARGE_INTESTINE	0.17	0.91	0.6887	TRUE	519	3926	326	965	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	POMK--CA3	34	23	POMK	4467	chr8:42958973:+	CA3	12996	chr8:86351941:+	ONLY_REF_SPLICE	YES	5	0	0.92	1	0.5446	0.3684	POMK->chr8:42948658-42978577:+,protein-O-mannose_kinase,CA3->carbonic_anhydrase_3,chr8:86285665-86361269:+	SW1417_LARGE_INTESTINE	0.92	1	0.913	TRUE	0	0	0	1	0	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	MT-TA--MT-TC	29	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4645	0.032	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW1417_LARGE_INTESTINE	1	1	0.4965	FALSE	462	80	0	856	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND6--MT-TE	28	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4485	0.0641	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1417_LARGE_INTESTINE	1	1	0.5126	FALSE	499	1288	110	792	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-TA--MT-TN	9	55	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1441	0.8809	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SW1417_LARGE_INTESTINE	1	1	1.025	FALSE	369	2501	205	193	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	HDDC2--SRPK1	17	15	HDDC2	2410	chr6:125621684:-	SRPK1	34405	chr6:35810381:-	ONLY_REF_SPLICE	YES	75	63	0.3	0.34	0.2723	0.2402	{Klijn_CCL:Colo-Rectal=1},HDDC2->HD_domain_containing_2,chr6:125541108-125623282:-,SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-	SW1417_LARGE_INTESTINE	0.3	0.34	0.5125	TRUE	0	0	0	1	0	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	MT-TA--MT-TN	6	44	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0961	0.7047	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SW1417_LARGE_INTESTINE	1	1	0.8008	FALSE	369	2501	205	193	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND6--MT-TE	15	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2402	0.0641	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1417_LARGE_INTESTINE	1	1	0.3043	FALSE	499	1288	110	792	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	CCAT1--CASC8	13	8	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	30	0	0.41	1	0.2082	0.1281	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SW1417_LARGE_INTESTINE	0.41	1	0.3363	TRUE	0	26	0	18	24	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND4--MT-ATP8	15	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2402	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW1417_LARGE_INTESTINE	1	1	0.2402	FALSE	230	193	14	283	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND6--MT-TE	12	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1922	0.1762	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1417_LARGE_INTESTINE	0.96	1	0.3684	FALSE	499	1288	110	792	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-TA--MT-TN	6	32	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0961	0.5125	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SW1417_LARGE_INTESTINE	1	1	0.6086	FALSE	369	2501	205	193	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-TA--MT-TN	10	16	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1602	0.2563	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SW1417_LARGE_INTESTINE	1	1	0.4165	FALSE	369	2501	205	193	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND6--MT-TE	8	20	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1281	0.3203	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1417_LARGE_INTESTINE	0.97	1	0.4484	FALSE	499	1288	110	792	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	NIPA2--POLA1	13	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2082	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SW1417_LARGE_INTESTINE	1	1	0.2082	TRUE	46	1352	75	139	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	WDR27--QKI	12	4	WDR27	30070	chr6:169982932:-	QKI	47709	chr6:163956014:+	ONLY_REF_SPLICE	YES	5	1	0.76	0.94	0.1922	0.0641	{Klijn_CCL:Colo-Rectal=1},WDR27->WD_repeat_domain_27,chr6:169857307-170102159:-,QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+	SW1417_LARGE_INTESTINE	0.76	0.94	0.2563	TRUE	0	0	0	1	0	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	CCAT1--CASC8	9	14	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	30	0	0.43	1	0.1441	0.2242	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SW1417_LARGE_INTESTINE	0.43	1	0.3683	TRUE	0	7	0	14	6	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	POMK--CA3	5	24	POMK	4467	chr8:42958973:+	CA3	10829	chr8:86295183:+	ONLY_REF_SPLICE	YES	5	0	0.85	1	0.0801	0.3844	POMK->chr8:42948658-42978577:+,protein-O-mannose_kinase,CA3->carbonic_anhydrase_3,chr8:86285665-86361269:+	SW1417_LARGE_INTESTINE	0.85	1	0.4645	TRUE	0	0	0	1	0	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ATP6--MT-CO1	9	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13284	23044	0	0	0.1441	0.032	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW1417_LARGE_INTESTINE	0	0	0.1761	FALSE	183	104	9	328	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2308	0	0	1	0.1441	0.016	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SW1417_LARGE_INTESTINE	0	1	0.1601	FALSE	13	9	0	364	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-TA--MT-TC	8	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1281	0.048	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW1417_LARGE_INTESTINE	1	1	0.1761	FALSE	462	80	0	856	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-TA--MT-TN	4	19	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0.3043	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SW1417_LARGE_INTESTINE	1	1	0.3684	FALSE	369	2501	205	193	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1281	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW1417_LARGE_INTESTINE	1	1	0.1281	FALSE	230	198	14	283	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND6--MT-TE	4	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0641	0.2242	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1417_LARGE_INTESTINE	0.95	1	0.2883	FALSE	499	1288	110	792	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ATP6--MT-CO1	7	1	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	YES	5449	18794	0	0	0.1121	0.016	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW1417_LARGE_INTESTINE	0	0	0.1281	FALSE	183	104	9	328	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-TA--MT-TN	7	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1121	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SW1417_LARGE_INTESTINE	1	1	0.1121	FALSE	369	2501	205	193	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-TA--MT-TN	7	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1121	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SW1417_LARGE_INTESTINE	1	1	0.1121	FALSE	369	2501	205	193	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	RP1-34H18.1--NAV3	7	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1121	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SW1417_LARGE_INTESTINE	1	1	0.1121	TRUE	254	575	65	124	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	FTH1--ACTG1	6	1	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	6309	1	0	0.88	0.0961	0.016	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SW1417_LARGE_INTESTINE	0	0.88	0.1121	TRUE	0	0	0	64	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ATP6--MT-CO1	6	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10914	23091	0	0	0.0961	0.016	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW1417_LARGE_INTESTINE	0	0	0.1121	FALSE	183	104	9	328	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	SLC1A5--MT-ND4L	6	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	686	0	0.01	1	0.0961	0.016	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW1417_LARGE_INTESTINE	0.01	1	0.1121	FALSE	0	0	0	189	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14411	6	0	0.6	0.0801	0.0641	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW1417_LARGE_INTESTINE	0	0.6	0.1442	FALSE	231	217	16	283	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0961	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW1417_LARGE_INTESTINE	1	1	0.0961	FALSE	231	205	14	283	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0961	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SW1417_LARGE_INTESTINE	1	1	0.0961	FALSE	369	2501	205	193	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	C15orf57--CBX3	4	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	30	46	0.27	0.19	0.0641	0.1121	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SW1417_LARGE_INTESTINE	0.19	0.27	0.1762	TRUE	267	562	48	632	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	7	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2219	51	0	0.18	0.0641	0.1121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW1417_LARGE_INTESTINE	0	0.18	0.1762	FALSE	216	209	16	281	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ATP6--MT-CO1	5	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	10044	21084	0	0	0.0801	0.016	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW1417_LARGE_INTESTINE	0	0	0.0961	FALSE	183	104	9	328	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13674	51	0	0.15	0.0641	0.0801	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW1417_LARGE_INTESTINE	0	0.15	0.1442	FALSE	231	217	16	283	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	5	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	14358	0	0	1	0.0641	0.0801	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW1417_LARGE_INTESTINE	0	1	0.1442	FALSE	231	217	16	283	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	8	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	12502	0	0	1	0.048	0.1281	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW1417_LARGE_INTESTINE	0	1	0.1761	FALSE	231	215	16	283	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	7	MT-ND4	1887	chrM:11646:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	NO	14240	0	0	1	0.048	0.1121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW1417_LARGE_INTESTINE	0	1	0.1601	FALSE	231	217	16	283	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	7	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	6386	511	0	0.02	0.048	0.1121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW1417_LARGE_INTESTINE	0	0.02	0.1601	FALSE	231	215	16	283	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND6--MT-TE	3	6	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.048	0.0961	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1417_LARGE_INTESTINE	1	1	0.1441	FALSE	499	1288	110	792	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	10718	22703	0	0	0.0641	0.016	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW1417_LARGE_INTESTINE	0	0	0.0801	FALSE	183	104	9	328	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SW1417_LARGE_INTESTINE	1	1	0.0641	FALSE	13	9	0	364	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	4	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	14306	1464	0	0	0.048	0.0641	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW1417_LARGE_INTESTINE	0	0	0.1121	FALSE	231	217	16	283	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-TA--MT-TN	4	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SW1417_LARGE_INTESTINE	1	1	0.0641	FALSE	369	2501	205	193	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	14009	0	0	1	0.048	0.048	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW1417_LARGE_INTESTINE	0	1	0.096	FALSE	231	217	16	283	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.048	0.048	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW1417_LARGE_INTESTINE	1	1	0.096	FALSE	462	80	0	856	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	11075	21381	0	0	0.048	0.032	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW1417_LARGE_INTESTINE	0	0	0.08	FALSE	183	104	9	328	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	NO	10495	20688	0	0	0.048	0.016	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW1417_LARGE_INTESTINE	0	0	0.064	FALSE	183	104	9	328	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	NO	10427	23044	0	0	0.048	0.016	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW1417_LARGE_INTESTINE	0	0	0.064	FALSE	183	104	9	328	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	16216	0	0	1	0.048	0.016	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW1417_LARGE_INTESTINE	0	1	0.064	FALSE	231	217	16	283	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.048	0.016	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW1417_LARGE_INTESTINE	0.8	1	0.064	FALSE	292	1546	117	613	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.048	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1417_LARGE_INTESTINE	1	1	0.048	FALSE	499	1288	110	792	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	RPSAP52--HMGA2	3	0	RPSAP52	1132	chr12:66220623:-	HMGA2	10409	chr12:66232299:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.048	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SW1417_LARGE_INTESTINE	1	1	0.048	FALSE	0	2	0	7	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	HDDC2--SRPK1	1	6	HDDC2	2410	chr6:125621684:-	SRPK1	35887	chr6:35806206:-	ONLY_REF_SPLICE	YES	75	62	0.09	0.1	0.016	0.0961	{Klijn_CCL:Colo-Rectal=1},HDDC2->HD_domain_containing_2,chr6:125541108-125623282:-,SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-	SW1417_LARGE_INTESTINE	0.09	0.1	0.1121	TRUE	0	0	0	1	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	POMK--CA3	1	6	POMK	4467	chr8:42958973:+	CA3	14194	chr8:86354302:+	ONLY_REF_SPLICE	YES	5	11	0.58	0.39	0.016	0.0961	POMK->chr8:42948658-42978577:+,protein-O-mannose_kinase,CA3->carbonic_anhydrase_3,chr8:86285665-86361269:+	SW1417_LARGE_INTESTINE	0.39	0.58	0.1121	TRUE	0	0	0	1	0	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	RP11-6N13.1--CTD-2374C24.1	2	2	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.032	0.032	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SW1417_LARGE_INTESTINE	1	1	0.064	TRUE	5	12	0	42	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.23	1	0.032	0.016	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW1417_LARGE_INTESTINE	0.23	1	0.048	FALSE	125	705	46	456	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0.016	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW1417_LARGE_INTESTINE	1	1	0.048	FALSE	515	4851	409	746	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.016	0.032	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW1417_LARGE_INTESTINE	0.3	1	0.048	FALSE	164	806	69	479	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	RP11-6N13.1--CTD-2374C24.1	1	2	RP11-6N13.1	6832	chr5:104082242:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.016	0.032	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SW1417_LARGE_INTESTINE	1	1	0.048	TRUE	0	1	0	2	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	ATP11C--CXorf66	1	1	ATP11C	3132	chrX:139014175:-	CXorf66	42658	chrX:139040376:-	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.016	0.016	LOCAL_REARRANGEMENT:-:[10449],ATP11C->ATPase_phospholipid_transporting_11C,chrX:138808505-139027435:-,CXorf66->chrX:139037884-139047679:-,chromosome_X_open_reading_frame_66	SW1417_LARGE_INTESTINE	0.11	1	0.032	TRUE	0	1	0	1	1	TRUE	ACH-000236
SW1417_LARGE_INTESTINE	HOXB3--SKI	1	1	HOXB3	2581	chr17:46667487:-	SKI	24960	chr1:2234417:+	ONLY_REF_SPLICE	YES	59	37	0.03	0.05	0.016	0.016	HOXB3->chr17:46626232-46682274:-,homeobox_B3,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	SW1417_LARGE_INTESTINE	0.03	0.05	0.032	TRUE	0	0	0	1	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	PAIP2--CTNNA1	1	1	PAIP2	1394	chr5:138677669:+	CTNNA1	36930	chr5:138240038:+	ONLY_REF_SPLICE	YES	118	742	0.02	0	0.016	0.016	PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	SW1417_LARGE_INTESTINE	0	0.02	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000236
SW1417_LARGE_INTESTINE	SPRY4--DAZAP1	1	1	SPRY4	2611	chr5:141704409:-	DAZAP1	17607	chr19:1417499:+	ONLY_REF_SPLICE	YES	136	144	0.01	0.01	0.016	0.016	SPRY4->chr5:141689992-141706020:-,sprouty_RTK_signaling_antagonist_4,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	SW1417_LARGE_INTESTINE	0.01	0.01	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000236
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	296	58	IGH@	93981	chr14:106330797:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1262	0	0.22	1	2.6446	0.5182	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	3.1628	TRUE	0	0	0	3	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	216	92	IGH@	95370	chr14:106329408:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1220	0	0.2	1	1.9298	0.822	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	2.7518	TRUE	0	0	0	3	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	210	26	IGH@	93369	chr14:106331409:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1398	0	0.14	1	1.8762	0.2323	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	2.1085	TRUE	0	0	0	3	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	176	52	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	1.5725	0.4646	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.0371	TRUE	508	994	45	981	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--RP3-436N22.3	168	43	RABGAP1L	14961	chr1:174274265:+	RP3-436N22.3	55637	chr1:173571911:+	ONLY_REF_SPLICE	YES	125	0	0.63	1	1.501	0.3842	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,RP3-436N22.3->chr1:173524390-173581911:+	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	1	1.8852	TRUE	0	0	0	1	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	109	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	270	4	0.3	0.97	0.9739	0.0447	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.97	1.0186	TRUE	519	3926	326	965	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	90	20	IGH@	93161	chr14:106331617:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1398	0	0.07	1	0.8041	0.1787	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.9828	TRUE	0	0	0	3	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	74	62	IGH@	94353	chr14:106330425:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1238	0	0.1	1	0.6611	0.5539	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	1.215	TRUE	0	0	0	3	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	89	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7952	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7952	TRUE	0	0	0	518	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	60	63	IGH@	94754	chr14:106330024:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1204	0	0.09	1	0.5361	0.5629	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	1.099	TRUE	0	0	0	3	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	45	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4021	0.0268	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4289	FALSE	462	80	0	856	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUZ12P--CRLF3	40	17	SUZ12P	11951	chr17:29096983:+	CRLF3	35192	chr17:29101362:-	ONLY_REF_SPLICE	YES	20	0	0.74	1	0.3574	0.1519	NEIGHBORS_OVERLAP:+:-:[21520],SUZ12P->chr17:29036317-29117926:+,CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	0.5093	FALSE	11	30	1	7	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUZ12P--CRLF3	37	9	SUZ12P	11951	chr17:29096983:+	CRLF3	36039	chr17:29100515:-	ONLY_REF_SPLICE	YES	20	1	0.7	0.98	0.3306	0.0804	NEIGHBORS_OVERLAP:+:-:[21520],SUZ12P->chr17:29036317-29117926:+,CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.98	0.411	FALSE	11	30	1	7	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	37	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3306	0.0447	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3753	TRUE	477	1352	189	275	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	29	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2591	0.0268	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2859	FALSE	499	1288	110	792	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CRLF3--SUZ12P	22	1	CRLF3	16484	chr17:29100425:-	SUZ12P	34879	chr17:29111801:+	INCL_NON_REF_SPLICE	YES	0	17	1	0.57	0.1966	0.0089	NEIGHBORS_OVERLAP:-:+:[21520],CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3,SUZ12P->chr17:29036317-29117926:+	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.2055	FALSE	3	1	0	3	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	17	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.1519	0.1161	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.268	FALSE	499	1288	110	792	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SECISBP2L--HMGB2	19	0	SECISBP2L	20495	chr15:49284746:-	HMGB2	30528	chr4:174253317:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1698	0	SECISBP2L->SECIS_binding_protein_2_like,chr15:49280673-49338760:-,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1698	TRUE	0	0	0	2	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	17	2	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	3631	0	0.01	1	0.1519	0.0179	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1698	TRUE	0	0	0	100	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	45	MT-CO3	1322	chrM:9528:+	MT-ATP6	5065	chrM:8807:+	INCL_NON_REF_SPLICE	NO	0	71	1	0.42	0.0536	0.4021	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.4557	FALSE	189	492	56	216	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	17	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1519	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1519	TRUE	0	0	0	434	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	42	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	2	0.94	0.96	0.0536	0.3752	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	0.96	0.4288	FALSE	189	492	56	216	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	44	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	5	1	0.9	0.98	0.0268	0.3931	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.98	0.4199	FALSE	189	492	56	216	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	44	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	5	3	0.9	0.94	0.0268	0.3931	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.94	0.4199	FALSE	189	492	56	216	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	34	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0.3038	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3395	FALSE	499	1288	110	792	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--RP3-436N22.3	1	43	RABGAP1L	18286	chr1:174363283:+	RP3-436N22.3	55637	chr1:173571911:+	ONLY_REF_SPLICE	NO	153	0	0.22	1	0.0089	0.3842	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,RP3-436N22.3->chr1:173524390-173581911:+	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.3931	TRUE	0	0	0	1	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	10	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3980	0	0	1	0.0893	0.0179	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1072	FALSE	13	9	0	364	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0804	0.0268	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1072	FALSE	499	1288	110	792	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3940	0	0	1	0.0804	0.0179	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0983	FALSE	13	9	0	364	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	9	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0804	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0804	TRUE	0	0	0	518	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	15	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	4	0	0.83	1	0.0447	0.134	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.1787	FALSE	189	492	56	216	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	23	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0268	0.2055	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.2323	FALSE	499	1288	110	792	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	8	0	IGH@	97640	chr14:106321054:-	TMSB4X	131816	chrX:12993241:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0715	TRUE	0	0	0	6	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0.1519	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1787	FALSE	499	1288	110	792	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	6	2	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0536	0.0179	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0715	FALSE	46	201	11	112	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MS4A1	6	1	MT-ND5	1665	chrM:13001:+	MS4A1	5969	chr11:60223381:+	INCL_NON_REF_SPLICE	YES	2865	65	0	0.1	0.0536	0.0089	MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MS4A1->chr11:60223225-60238233:+,membrane_spanning_4-domains_A1	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.1	0.0625	FALSE	0	0	0	3	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	13	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.84	1	0.0268	0.1161	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	1	0.1429	FALSE	499	1288	110	792	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	7	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	3	0	0.79	1	0.0357	0.0625	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	0.0982	FALSE	189	492	56	216	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	11	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0.0983	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1251	FALSE	499	1288	110	792	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--RP3-436N22.3	2	13	RABGAP1L	13819	chr1:174247917:+	RP3-436N22.3	55637	chr1:173571911:+	ONLY_REF_SPLICE	YES	192	0	0.07	1	0.0179	0.1161	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,RP3-436N22.3->chr1:173524390-173581911:+	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.134	TRUE	0	0	0	1	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	5	1	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0.0089	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	13	49	2	38	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	4	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0.0447	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0804	TRUE	160	277	29	98	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	5	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0447	FALSE	1	11	0	34	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SECISBP2L--HMGB2	5	0	SECISBP2L	20486	chr15:49284755:-	HMGB2	30518	chr4:174253327:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	SECISBP2L->SECIS_binding_protein_2_like,chr15:49280673-49338760:-,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0447	TRUE	0	0	0	2	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	4	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	5	1	24	1	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	FALSE	462	80	0	856	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	434	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0268	0.0268	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.0536	FALSE	189	492	56	216	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0268	FALSE	183	104	9	328	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0268	FALSE	189	492	56	216	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0268	FALSE	499	1288	110	792	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0268	TRUE	0	0	0	434	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRRC2C--SFPQ	3	0	PRRC2C	1224	chr1:171454874:+	SFPQ	59743	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0268	TRUE	0	1	1	1	1	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SECISBP2L--HMGB2	3	0	SECISBP2L	20492	chr15:49284749:-	HMGB2	30498	chr4:174253347:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	SECISBP2L->SECIS_binding_protein_2_like,chr15:49280673-49338760:-,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0268	TRUE	0	0	0	2	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	2	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0.0179	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0358	TRUE	274	363	69	150	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C4orf32--TIFA	2	0	C4orf32	1337	chr4:113066889:+	TIFA	16259	chr4:113199590:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	LOCAL_INVERSION:+:-:[79286],C4orf32->chr4:113066553-113116412:+,chromosome_4_open_reading_frame_32,TIFA->TRAF_interacting_protein_with_forkhead_associated_domain,chr4:113195698-113207059:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2207O23.3--IGL@	2	0	CTD-2207O23.3	2443	chr19:7448089:+	IGL@	82664	chr22:23237555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	CTD-2207O23.3->chr19:7445850-7535131:+,IGL@->Oncogene{Bushman}	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--MYBL1	2	0	IGLL5	1480	chr22:23230439:+	MYBL1	10439	chr8:67514758:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,MYBL1->MYB_proto-oncogene_like_1,Oncogene{Bushman},chr8:67474410-67526482:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLHL26--EXOC3	2	0	KLHL26	1173	chr19:18747947:+	EXOC3	21830	chr5:462075:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	KLHL26->chr19:18747775-18781309:+,kelch_like_family_member_26,EXOC3->chr5:443273-472052:+,exocyst_complex_component_3	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	1	3	IGH@	94353	chr14:106330425:-	CASC11	135896	chr8:128715488:-	ONLY_REF_SPLICE	NO	1238	53	0	0.07	0.0089	0.0268	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0357	FALSE	0	0	0	1	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	1	3	IGH@	94754	chr14:106330024:-	CASC11	135896	chr8:128715488:-	ONLY_REF_SPLICE	NO	1204	53	0	0.07	0.0089	0.0268	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0357	FALSE	0	0	0	2	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	1	3	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	10	0	0.29	1	0.0089	0.0268	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.0357	TRUE	37	101	7	40	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	1	2	IGH@	93161	chr14:106331617:-	CASC11	135896	chr8:128715488:-	ONLY_REF_SPLICE	YES	1398	53	0	0.05	0.0089	0.0179	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	1	2	IGH@	93369	chr14:106331409:-	CASC11	135896	chr8:128715488:-	ONLY_REF_SPLICE	YES	1398	53	0	0.05	0.0089	0.0179	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC2D--YBX3	1	1	CLEC2D	3303	chr12:9822391:+	YBX3	18141	chr12:10871742:-	ONLY_REF_SPLICE	YES	19	74	0.1	0.03	0.0089	0.0089	CLEC2D->C-type_lectin_domain_family_2_member_D,chr12:9817565-9848413:+,YBX3->Y-box_binding_protein_3,chr12:10851683-10875911:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.1	0.0178	TRUE	0	0	0	1	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DAZAP1--TCF3	1	1	DAZAP1	1234	chr19:1407801:+	TCF3	26335	chr19:1632404:-	ONLY_REF_SPLICE	YES	352	563	0.01	0	0.0089	0.0089	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+,TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCK--GRSF1	1	1	DCK	3596	chr4:71863899:+	GRSF1	16290	chr4:71702031:-	ONLY_REF_SPLICE	YES	492	76	0	0.03	0.0089	0.0089	GTEx&tcga_normals:1/3694=0.03%,DCK->chr4:71858255-71896631:+,deoxycytidine_kinase,GRSF1->G-rich_RNA_sequence_binding_factor_1,chr4:71681499-71705662:-	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0178	FALSE	0	4	0	2	2	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--DCTD	1	1	IGLL5	1480	chr22:23230439:+	DCTD	9697	chr4:183836728:-	ONLY_REF_SPLICE	YES	948	40	0	0.05	0.0089	0.0089	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,DCTD->chr4:183811213-183839089:-,dCMP_deaminase	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPLP0--MYBL2	1	1	RPLP0	3682	chr12:120636357:-	MYBL2	16610	chr20:42331130:+	ONLY_REF_SPLICE	YES	6055	722	0	0	0.0089	0.0089	RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0,MYBL2->MYB_proto-oncogene_like_2,Oncogene{Bushman},chr20:42295754-42345136:+	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000654
RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STIL--DOCK2	1	1	STIL	21871	chr1:47725961:-	DOCK2	51191	chr5:169174400:+	ONLY_REF_SPLICE	NO	77	139	0.03	0.01	0.0089	0.0089	STIL->Oncogene{Bushman},SCL/TAL1_interrupting_locus,chr1:47715811-47779819:-,DOCK2->chr5:169064251-169510386:+,dedicator_of_cytokinesis_2	RAJI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000654
SNU1197_LARGE_INTESTINE	CCAT1--CASC8	299	109	CCAT1	1279	chr8:128231055:-	CASC8	12971	chr8:128433208:-	ONLY_REF_SPLICE	YES	12	3	0.97	0.99	2.8623	1.0435	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1197_LARGE_INTESTINE	0.97	0.99	3.9058	TRUE	0	7	0	7	7	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	WBP4--SLC25A15	167	45	WBP4	3715	chr13:41639423:+	SLC25A15	22860	chr13:41383679:+	ONLY_REF_SPLICE	YES	96	21	0.69	0.91	1.5987	0.4308	WBP4->WW_domain_binding_protein_4,chr13:41635410-41658137:+,SLC25A15->chr13:41363548-41384247:+,solute_carrier_family_25_member_15	SNU1197_LARGE_INTESTINE	0.69	0.91	2.0295	TRUE	0	0	0	1	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-TA--MT-TN	121	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1583	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1197_LARGE_INTESTINE	1	1	1.1583	FALSE	369	2501	205	193	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-TA--MT-TC	109	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0435	0.0862	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1197_LARGE_INTESTINE	1	1	1.1297	FALSE	462	80	0	856	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-RNR2	99	8	MT-ND4	1947	chrM:11706:+	MT-RNR2	5392	chrM:1684:+	INCL_NON_REF_SPLICE	NO	19095	0	0.01	1	0.9477	0.0766	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1197_LARGE_INTESTINE	0.01	1	1.0243	FALSE	13	19	3	21	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	94	5	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	19004	1544	0.01	0.06	0.8999	0.0479	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0.01	0.06	0.9478	FALSE	231	217	16	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	TIMM23B--LINC00843	79	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7563	0.201	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU1197_LARGE_INTESTINE	1	1	0.9573	TRUE	508	994	45	981	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-CO3--MT-ND1	63	1	MT-CO3	1126	chrM:9332:+	MT-ND1	5076	chrM:3598:+	INCL_NON_REF_SPLICE	NO	6613	11736	0.01	0.01	0.6031	0.0096	LOCAL_REARRANGEMENT:+:[4945],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU1197_LARGE_INTESTINE	0.01	0.01	0.6127	FALSE	12	48	6	3	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-TA--MT-TN	28	88	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.268	0.8424	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1197_LARGE_INTESTINE	1	1	1.1104	FALSE	369	2501	205	193	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND6--MT-TE	45	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.4308	0.0383	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1197_LARGE_INTESTINE	0.98	1	0.4691	FALSE	499	1288	110	792	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	TIMM23--RP11-464F9.1	45	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4308	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU1197_LARGE_INTESTINE	1	1	0.4308	TRUE	519	3926	326	965	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	RORC--THEM4	38	23	RORC	2975	chr1:151801905:-	THEM4	23401	chr1:151849601:-	ONLY_REF_SPLICE	YES	2	35	0.97	0.64	0.3638	0.2202	LOCAL_REARRANGEMENT:-:[41712],RORC->Oncogene{Bushman},RAR_related_orphan_receptor_C,chr1:151778547-151804348:-,THEM4->chr1:151846060-151882284:-,thioesterase_superfamily_member_4	SNU1197_LARGE_INTESTINE	0.64	0.97	0.584	TRUE	0	0	0	1	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-TA--MT-TN	32	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3063	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1197_LARGE_INTESTINE	1	1	0.3063	FALSE	369	2501	205	193	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	CCAT1--CASC8	10	86	CCAT1	1274	chr8:128231060:-	CASC8	12971	chr8:128433208:-	INCL_NON_REF_SPLICE	YES	8	3	0.92	0.97	0.0957	0.8233	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1197_LARGE_INTESTINE	0.92	0.97	0.919	TRUE	0	7	0	7	7	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	CCAT1--CASC8	3	109	CCAT1	1279	chr8:128231055:-	CASC8	11189	chr8:128455965:-	ONLY_REF_SPLICE	YES	12	0	0.9	1	0.0287	1.0435	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1197_LARGE_INTESTINE	0.9	1	1.0722	TRUE	0	0	0	2	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	ZNF654--HMGB2	28	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.268	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU1197_LARGE_INTESTINE	1	1	0.268	TRUE	0	0	0	518	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-TA--MT-TN	14	51	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.134	0.4882	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1197_LARGE_INTESTINE	1	1	0.6222	FALSE	369	2501	205	193	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	25	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15979	6	0	0.82	0.2393	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0.82	0.2584	FALSE	230	193	14	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-TA--MT-TN	8	67	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0766	0.6414	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1197_LARGE_INTESTINE	1	1	0.718	FALSE	369	2501	205	193	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ND1	24	1	MT-ND4	1213	chrM:10972:+	MT-ND1	5394	chrM:3322:+	INCL_NON_REF_SPLICE	YES	16111	0	0	1	0.2298	0.0096	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU1197_LARGE_INTESTINE	0	1	0.2394	FALSE	51	50	3	16	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ND1	22	7	MT-ND4	2043	chrM:11802:+	MT-ND1	5745	chrM:3673:+	INCL_NON_REF_SPLICE	NO	16181	13443	0	0	0.2106	0.067	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU1197_LARGE_INTESTINE	0	0	0.2776	FALSE	51	52	3	16	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-TA--MT-TN	17	24	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1627	0.2298	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1197_LARGE_INTESTINE	1	1	0.3925	FALSE	369	2501	205	193	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND6--MT-TE	18	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	7	0	0.83	1	0.1723	0.1627	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1197_LARGE_INTESTINE	0.83	1	0.335	FALSE	499	1288	110	792	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND6--MT-TE	20	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1915	0.0383	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1197_LARGE_INTESTINE	0.96	1	0.2298	FALSE	499	1288	110	792	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND6--MT-TE	12	23	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	7	0	0.83	1	0.1149	0.2202	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1197_LARGE_INTESTINE	0.83	1	0.3351	FALSE	499	1288	110	792	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	HSP90AB1--MT-RNR2	17	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2449	0	0.01	1	0.1627	0.0096	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1197_LARGE_INTESTINE	0.01	1	0.1723	FALSE	13	9	0	364	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	NRIP1--AF127936.7	16	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.9	1	0.1532	0.0191	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1197_LARGE_INTESTINE	0.9	1	0.1723	FALSE	292	1546	117	613	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-TA--MT-TC	14	8	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.134	0.0766	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1197_LARGE_INTESTINE	1	1	0.2106	FALSE	462	80	0	856	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	CCAT1--CASC8	7	34	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	12	45	0.77	0.48	0.067	0.3255	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1197_LARGE_INTESTINE	0.48	0.77	0.3925	TRUE	0	7	0	14	6	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-TA--MT-TN	7	31	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0.2968	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1197_LARGE_INTESTINE	1	1	0.3638	FALSE	369	2501	205	193	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	CCAT1--CASC8	9	19	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	12	60	0.7	0.32	0.0862	0.1819	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1197_LARGE_INTESTINE	0.32	0.7	0.2681	TRUE	0	26	0	18	24	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ND1	13	3	MT-ND4	1510	chrM:11269:+	MT-ND1	5676	chrM:3604:+	INCL_NON_REF_SPLICE	YES	21351	12180	0	0	0.1244	0.0287	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU1197_LARGE_INTESTINE	0	0	0.1531	FALSE	51	52	3	16	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND6--MT-TE	8	21	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0766	0.201	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1197_LARGE_INTESTINE	0.97	1	0.2776	FALSE	499	1288	110	792	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND6--MT-TE	7	17	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	8	0	0.75	1	0.067	0.1627	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1197_LARGE_INTESTINE	0.75	1	0.2297	FALSE	499	1288	110	792	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	8	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.9	1	0.0766	0.0957	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1197_LARGE_INTESTINE	0.9	1	0.1723	FALSE	515	4851	409	746	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-TA--MT-TC	10	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0957	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1197_LARGE_INTESTINE	1	1	0.0957	FALSE	462	80	0	856	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-TA--MT-TC	7	12	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0.1149	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1197_LARGE_INTESTINE	1	1	0.1819	FALSE	462	80	0	856	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-TA--MT-TN	9	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1197_LARGE_INTESTINE	1	1	0.0862	FALSE	369	2501	205	193	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1197_LARGE_INTESTINE	1	1	0.0862	TRUE	0	0	0	434	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	RP11-123O10.4--GRIP1	9	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0862	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU1197_LARGE_INTESTINE	1	1	0.0862	FALSE	416	2512	207	587	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	3	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	21819	0	0	1	0.0766	0.0287	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	1	0.1053	FALSE	231	217	16	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND6--MT-TE	3	23	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.87	1	0.0287	0.2202	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1197_LARGE_INTESTINE	0.87	1	0.2489	FALSE	499	1288	110	792	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15966	7	0	0.59	0.0766	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0.59	0.0957	FALSE	230	198	14	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	2	MT-ND4	1201	chrM:10960:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15850	7	0	0.59	0.0766	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0.59	0.0957	FALSE	230	193	14	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	ACTR3C--RP11-728K20.1	6	9	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	35	0	0.3	1	0.0574	0.0862	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	SNU1197_LARGE_INTESTINE	0.3	1	0.1436	TRUE	0	5	0	16	1	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	9	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	18617	0	0	1	0.0574	0.0862	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	1	0.1436	FALSE	231	217	16	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	8	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	19107	7	0	0.67	0.0574	0.0766	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0.67	0.134	FALSE	231	217	16	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	3	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	20717	1	0	0.91	0.067	0.0287	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0.91	0.0957	FALSE	231	217	16	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18510	7	0	0.56	0.067	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0.56	0.0861	FALSE	231	205	14	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-RNR2	7	2	MT-ND4	1843	chrM:11602:+	MT-RNR2	5709	chrM:2001:+	INCL_NON_REF_SPLICE	YES	18816	12800	0	0	0.067	0.0191	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1197_LARGE_INTESTINE	0	0	0.0861	FALSE	13	19	3	21	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND5--MT-ND6	4	14	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0.134	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SNU1197_LARGE_INTESTINE	1	1	0.1723	FALSE	26	124	4	93	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	9	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	19068	0	0	1	0.0479	0.0862	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	1	0.1341	FALSE	231	217	16	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	7	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.067	0.0096	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU1197_LARGE_INTESTINE	0.89	1	0.0766	FALSE	81	155	12	160	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ATP6--MT-CO1	7	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1197_LARGE_INTESTINE	1	1	0.067	FALSE	183	104	9	328	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	8	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18388	72	0	0.15	0.0479	0.0766	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0.15	0.1245	FALSE	231	217	16	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-RNR2	7	0	MT-ND4	1209	chrM:10968:+	MT-RNR2	5415	chrM:1707:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1197_LARGE_INTESTINE	1	1	0.067	FALSE	13	19	3	21	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-TA--MT-TN	7	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1197_LARGE_INTESTINE	1	1	0.067	FALSE	369	2501	205	193	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	3	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	21473	0	0	1	0.0574	0.0287	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	1	0.0861	FALSE	231	217	16	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	4	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0383	0.1053	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1197_LARGE_INTESTINE	0.88	1	0.1436	FALSE	407	2205	196	549	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2466	0	0	1	0.0574	0.0096	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1197_LARGE_INTESTINE	0	1	0.067	FALSE	13	9	0	364	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1197_LARGE_INTESTINE	1	1	0.0574	FALSE	183	104	9	328	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	8	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18802	2	0	0.86	0.0383	0.0766	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0.86	0.1149	FALSE	231	217	16	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	8	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21853	72	0	0.14	0.0383	0.0766	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0.14	0.1149	FALSE	231	217	16	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-TA--MT-TN	6	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1197_LARGE_INTESTINE	1	1	0.0574	FALSE	369	2501	205	193	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	2	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15896	7	0	0.5	0.0479	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0.5	0.067	FALSE	230	193	14	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	2	MT-ND4	1294	chrM:11053:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	19506	5	0	0.58	0.0479	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0.58	0.067	FALSE	231	205	14	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	NRIP1--AF127936.7	5	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.41	1	0.0479	0.0191	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1197_LARGE_INTESTINE	0.41	1	0.067	FALSE	125	705	46	456	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	3	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	0	0.93	1	0.0287	0.0957	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1197_LARGE_INTESTINE	0.93	1	0.1244	FALSE	467	2173	244	435	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MB21D2--FGF12	4	5	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	53	0	0.15	1	0.0383	0.0479	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	SNU1197_LARGE_INTESTINE	0.15	1	0.0862	FALSE	0	17	0	46	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND6--MT-TE	3	9	MT-ND6	1261	chrM:14413:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	6	0	0.67	1	0.0287	0.0862	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1197_LARGE_INTESTINE	0.67	1	0.1149	FALSE	499	1288	110	792	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND6--MT-TE	5	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0479	0.0096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1197_LARGE_INTESTINE	0.86	1	0.0575	FALSE	499	1288	110	792	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND6--MT-TE	3	9	MT-ND6	1421	chrM:14253:-	MT-TE	4584	chrM:14684:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.0862	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1197_LARGE_INTESTINE	1	1	0.1149	FALSE	499	1288	110	792	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	NRIP1--AF127936.7	4	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	19	0	0.32	1	0.0383	0.0479	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1197_LARGE_INTESTINE	0.32	1	0.0862	FALSE	164	806	69	479	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	IFI27--MT-ND4L	5	0	IFI27	8929	chr14:94582869:+	MT-ND4L	12095	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1197_LARGE_INTESTINE	1	1	0.0479	FALSE	0	0	0	13	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	18388	1944	0	0	0.0383	0.0383	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0	0.0766	FALSE	231	217	16	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-RNR2	3	8	MT-ND4	1923	chrM:11682:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	18661	0	0	1	0.0287	0.0766	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1197_LARGE_INTESTINE	0	1	0.1053	FALSE	13	19	3	21	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND6--MT-TE	3	8	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0287	0.0766	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1197_LARGE_INTESTINE	0.85	1	0.1053	FALSE	499	1288	110	792	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1197_LARGE_INTESTINE	1	1	0.0479	FALSE	499	1288	110	792	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-TA--MT-TC	3	8	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.0766	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1197_LARGE_INTESTINE	1	1	0.1053	FALSE	462	80	0	856	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-TA--MT-TN	5	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1197_LARGE_INTESTINE	1	1	0.0479	FALSE	369	2501	205	193	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-TA--MT-TN	5	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1197_LARGE_INTESTINE	1	1	0.0479	FALSE	369	2501	205	193	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	6	MT-ND4	1545	chrM:11304:+	MT-ATP8	5497	chrM:8484:+	INCL_NON_REF_SPLICE	YES	22380	718	0	0.01	0.0287	0.0574	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0.01	0.0861	FALSE	231	217	16	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	2	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	17132	1974	0	0	0.0383	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0	0.0574	FALSE	231	204	14	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	2	MT-ND4	1260	chrM:11019:+	MT-ATP8	5492	chrM:8479:+	INCL_NON_REF_SPLICE	YES	17437	424	0	0.01	0.0383	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0.01	0.0574	FALSE	231	205	14	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	VTI1A--RP11-57H14.3	4	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	84	0	0.07	1	0.0383	0.0191	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SNU1197_LARGE_INTESTINE	0.07	1	0.0574	FALSE	272	151	14	158	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND6--MT-TE	4	1	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0383	0.0096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1197_LARGE_INTESTINE	0.83	1	0.0479	FALSE	499	1288	110	792	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1197_LARGE_INTESTINE	1	1	0.0383	FALSE	183	104	9	328	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	4	MT-ATP6	1303	chrM:8829:+	MT-CO1	5135	chrM:6357:+	INCL_NON_REF_SPLICE	YES	21598	19972	0	0	0.0287	0.0383	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1197_LARGE_INTESTINE	0	0	0.067	FALSE	183	104	9	328	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1197_LARGE_INTESTINE	1	1	0.0383	FALSE	183	104	9	328	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-RNR2	4	0	MT-ND4	1222	chrM:10981:+	MT-RNR2	5968	chrM:2260:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1197_LARGE_INTESTINE	1	1	0.0383	FALSE	13	19	3	21	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-RNR2	4	0	MT-ND4	1212	chrM:10971:+	MT-RNR2	5959	chrM:2251:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1197_LARGE_INTESTINE	1	1	0.0383	FALSE	13	19	3	21	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-RNR2	4	0	MT-ND4	1519	chrM:11278:+	MT-RNR2	5933	chrM:2225:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1197_LARGE_INTESTINE	1	1	0.0383	FALSE	13	19	3	21	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-RNR2	4	0	MT-ND4	1235	chrM:10994:+	MT-RNR2	5914	chrM:2206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1197_LARGE_INTESTINE	1	1	0.0383	FALSE	13	19	3	21	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20648	2	0	0.75	0.0287	0.0287	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0.75	0.0574	FALSE	231	217	16	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.0096	0.1053	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1197_LARGE_INTESTINE	0.86	1	0.1149	FALSE	275	511	55	178	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	15979	0	0	1	0.0287	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	1	0.0478	FALSE	230	193	14	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	2	MT-ND4	1253	chrM:11012:+	MT-ATP8	5527	chrM:8514:+	INCL_NON_REF_SPLICE	YES	16784	1871	0	0	0.0287	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0	0.0478	FALSE	231	204	14	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	2	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	16575	2	0	0.71	0.0287	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0.71	0.0478	FALSE	231	204	14	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	ADAP1--SUN1	3	1	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	276	452	0.01	0.01	0.0287	0.0096	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SNU1197_LARGE_INTESTINE	0.01	0.01	0.0383	FALSE	16	22	0	27	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1164	chrM:10923:+	MT-ATP8	5455	chrM:8442:+	INCL_NON_REF_SPLICE	YES	13188	2	0	0.67	0.0287	0.0096	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1197_LARGE_INTESTINE	0	0.67	0.0383	FALSE	230	193	14	283	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND4--MT-RNR2	3	1	MT-ND4	1809	chrM:11568:+	MT-RNR2	5950	chrM:2242:+	INCL_NON_REF_SPLICE	YES	19023	12612	0	0	0.0287	0.0096	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1197_LARGE_INTESTINE	0	0	0.0383	FALSE	13	19	3	21	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ND6--MT-TE	3	1	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.0096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1197_LARGE_INTESTINE	1	1	0.0383	FALSE	499	1288	110	792	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	HMGCS1--CDC37	3	0	HMGCS1	1157	chr5:43313458:-	CDC37	22321	chr19:10504117:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	HMGCS1->3-hydroxy-3-methylglutaryl-CoA_synthase_1,chr5:43289497-43313614:-,CDC37->cell_division_cycle_37,chr19:10501810-10530797:-	SNU1197_LARGE_INTESTINE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1134	chrM:8660:+	MT-CO1	5163	chrM:6385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1197_LARGE_INTESTINE	1	1	0.0287	FALSE	183	104	9	328	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5332	chrM:6554:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1197_LARGE_INTESTINE	1	1	0.0287	FALSE	183	104	9	328	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	PCAT1--RP11-382A18.2	3	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	SNU1197_LARGE_INTESTINE	1	1	0.0287	TRUE	4	84	1	46	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	TXNRD1--CHST11	3	0	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	SNU1197_LARGE_INTESTINE	1	1	0.0287	TRUE	0	2	1	13	2	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	RP11-120D5.1--MID1	2	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	22	1	0.19	0.0191	0.0287	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU1197_LARGE_INTESTINE	0.19	1	0.0478	FALSE	16	356	14	466	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	RPSAP52--HMGA2	2	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	9	214	0.31	0.02	0.0191	0.0191	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SNU1197_LARGE_INTESTINE	0.02	0.31	0.0382	FALSE	0	59	0	125	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	2	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	1	6	0.75	0.33	0.0191	0.0096	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU1197_LARGE_INTESTINE	0.33	0.75	0.0287	FALSE	81	155	12	160	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	CWC27--MAL2	2	0	CWC27	8669	chr5:64084847:+	MAL2	29012	chr8:120252405:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	CWC27->CWC27_spliceosome_associated_protein_homolog,chr5:64064757-64314590:+,MAL2->chr8:120177273-120257913:+,mal,_T-cell_differentiation_protein_2_(gene/pseudogene)	SNU1197_LARGE_INTESTINE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	DNAJC25--UGCG	2	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	SNU1197_LARGE_INTESTINE	1	1	0.0191	TRUE	50	73	10	50	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	INPP5D--TMBIM1	2	0	INPP5D	1646	chr2:233925322:+	TMBIM1	45287	chr2:219144849:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	INPP5D->chr2:233924677-234116549:+,inositol_polyphosphate-5-phosphatase_D,TMBIM1->chr2:219138915-219157309:-,transmembrane_BAX_inhibitor_motif_containing_1	SNU1197_LARGE_INTESTINE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	PCYT2--STRA13	2	0	PCYT2	3599	chr17:79866444:-	STRA13	16526	chr17:79977785:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	PCYT2->chr17:79858841-79869340:-,phosphate_cytidylyltransferase_2,_ethanolamine,STRA13->chr17:79976578-79981983:-,stimulated_by_retinoic_acid_13	SNU1197_LARGE_INTESTINE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	PLXNB3--CDK5RAP3	2	0	PLXNB3	2219	chrX:153031035:+	CDK5RAP3	20934	chr17:46048728:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	PLXNB3->chrX:153029651-153044801:+,plexin_B3,CDK5RAP3->CDK5_regulatory_subunit_associated_protein_3,chr17:46045176-46059140:+	SNU1197_LARGE_INTESTINE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	TRIP10--TCP1	2	0	TRIP10	10652	chr19:6750644:+	TCP1	16152	chr6:160209175:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	TRIP10->chr19:6737936-6751537:+,thyroid_hormone_receptor_interactor_10,TCP1->chr6:160199530-160210781:-,t-complex_1	SNU1197_LARGE_INTESTINE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	ACTR3C--RP11-728K20.1	1	3	ACTR3C	9721	chr7:149946037:-	RP11-728K20.1	18809	chr7:149589487:-	ONLY_REF_SPLICE	YES	27	0	0.13	1	0.0096	0.0287	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	SNU1197_LARGE_INTESTINE	0.13	1	0.0383	TRUE	0	2	0	2	2	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	ACTR3C--RP11-728K20.1	1	3	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	18809	chr7:149589487:-	ONLY_REF_SPLICE	YES	35	0	0.1	1	0.0096	0.0287	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	SNU1197_LARGE_INTESTINE	0.1	1	0.0383	TRUE	0	3	0	4	2	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	HMGCS1--CDC37	1	2	HMGCS1	2550	chr5:43307868:-	CDC37	22321	chr19:10504117:-	ONLY_REF_SPLICE	YES	67	919	0.04	0	0.0096	0.0191	HMGCS1->3-hydroxy-3-methylglutaryl-CoA_synthase_1,chr5:43289497-43313614:-,CDC37->cell_division_cycle_37,chr19:10501810-10530797:-	SNU1197_LARGE_INTESTINE	0	0.04	0.0287	FALSE	0	0	0	1	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	RP11-281P23.1--RP11-281P23.2	1	2	RP11-281P23.1	1582	chr4:11471455:+	RP11-281P23.2	13426	chr4:11771933:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0096	0.0191	RP11-281P23.1->chr4:11470874-11479820:+,RP11-281P23.2->chr4:11627338-11815582:+	SNU1197_LARGE_INTESTINE	0.75	1	0.0287	TRUE	0	1	1	4	1	TRUE	ACH-000412
SNU1197_LARGE_INTESTINE	ACTR3C--RP11-728K20.1	1	1	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	19906	chr7:149588390:-	ONLY_REF_SPLICE	NO	35	2	0.05	0.5	0.0096	0.0096	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	SNU1197_LARGE_INTESTINE	0.05	0.5	0.0192	TRUE	3	46	4	12	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	C2orf61--CALM2	1	1	C2orf61	7327	chr2:47335527:-	CALM2	22283	chr2:47397903:-	ONLY_REF_SPLICE	YES	13	69	0.13	0.03	0.0096	0.0096	LOCAL_REARRANGEMENT:-:[4704],C2orf61->chr2:47272677-47382517:-,chromosome_2_open_reading_frame_61,CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-	SNU1197_LARGE_INTESTINE	0.03	0.13	0.0192	TRUE	0	1	0	4	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	ETFA--SCAPER	1	1	ETFA	1123	chr15:76603691:-	SCAPER	66953	chr15:76646481:-	ONLY_REF_SPLICE	YES	27	14	0.07	0.12	0.0096	0.0096	LOCAL_REARRANGEMENT:-:[36713],ETFA->chr15:76507696-76603813:-,electron_transfer_flavoprotein_alpha_subunit,SCAPER->S-phase_cyclin_A-associated_protein_in_the_ER,chr15:76640526-77197785:-	SNU1197_LARGE_INTESTINE	0.07	0.12	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	FOSL1--DRAP1	1	1	FOSL1	1333	chr11:65667712:-	DRAP1	9128	chr11:65687251:+	ONLY_REF_SPLICE	YES	1010	898	0	0	0.0096	0.0096	LOCAL_INVERSION:-:+:[18684],FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	SNU1197_LARGE_INTESTINE	0	0	0.0192	FALSE	0	0	0	6	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	JMJD1C--REEP3	1	1	JMJD1C	21925	chr10:64950654:-	REEP3	36225	chr10:65326098:+	ONLY_REF_SPLICE	YES	46	49	0.04	0.04	0.0096	0.0096	LOCAL_INVERSION:-:+:[55401],JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C,REEP3->chr10:65281123-65384883:+,receptor_accessory_protein_3	SNU1197_LARGE_INTESTINE	0.04	0.04	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	LYRM4--RPP40	1	1	LYRM4	4789	chr6:5216851:-	RPP40	24922	chr6:5002479:-	ONLY_REF_SPLICE	YES	81	39	0.02	0.05	0.0096	0.0096	NEIGHBORS[98530],LYRM4->LYR_motif_containing_4,chr6:5102827-5261172:-,RPP40->chr6:4994966-5004297:-,ribonuclease_P/MRP_subunit_p40	SNU1197_LARGE_INTESTINE	0.02	0.05	0.0192	FALSE	0	3	0	5	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	NPTN--B2M	1	1	NPTN	2010	chr15:73925466:-	B2M	20669	chr15:45007621:+	ONLY_REF_SPLICE	NO	150	293	0.01	0.01	0.0096	0.0096	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:3=pct:1.7]},GTEx_v2:{count=10;pct=0.12%;dist=Whole_Blood=8,Lung=1,Artery_-_Aorta=1},NPTN->chr15:73852355-73926475:-,neuroplastin,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	SNU1197_LARGE_INTESTINE	0.01	0.01	0.0192	FALSE	6	0	0	2	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	2	3	0.5	0.4	0.0096	0.0096	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1197_LARGE_INTESTINE	0.4	0.5	0.0192	FALSE	25	145	6	90	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	4925	chr12:76084295:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0096	0.0096	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU1197_LARGE_INTESTINE	0.5	1	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	22	0.5	0.08	0.0096	0.0096	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU1197_LARGE_INTESTINE	0.08	0.5	0.0192	FALSE	0	48	1	163	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	RP11-85M11.2--SPTAN1	1	1	RP11-85M11.2	5714	chr3:165178420:+	SPTAN1	25056	chr9:131341916:+	ONLY_REF_SPLICE	NO	2	318	0.5	0.01	0.0096	0.0096	RP11-85M11.2->chr3:164924748-165373211:+,SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1	SNU1197_LARGE_INTESTINE	0.01	0.5	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	UVSSA--MAEA	1	1	UVSSA	8854	chr4:1360219:+	MAEA	26629	chr4:1305767:+	ONLY_REF_SPLICE	YES	18	33	0.1	0.06	0.0096	0.0096	GTEx_FI:{Blood=[count:5=pct:2.9],Skin=[count:4=pct:1.3],Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:1=pct:0.8],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[7119],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	SNU1197_LARGE_INTESTINE	0.06	0.1	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000412
SNU1197_LARGE_INTESTINE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	24436	chr10:114650725:+	ONLY_REF_SPLICE	YES	84	0	0.02	1	0.0096	0.0096	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SNU1197_LARGE_INTESTINE	0.02	1	0.0192	FALSE	21	3	0	16	0	FALSE	ACH-000412
CFPAC1_PANCREAS	MT-TA--MT-TC	82	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9125	0.0779	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CFPAC1_PANCREAS	1	1	0.9904	FALSE	462	80	0	856	0	FALSE	ACH-000138
CFPAC1_PANCREAS	TIMM23B--LINC00843	54	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6009	0.2893	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CFPAC1_PANCREAS	1	1	0.8902	TRUE	508	994	45	981	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-TA--MT-TN	57	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6343	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CFPAC1_PANCREAS	1	1	0.6343	FALSE	369	2501	205	193	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND6--MT-TE	55	0	MT-ND6	1051	chrM:14623:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.612	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CFPAC1_PANCREAS	1	1	0.612	FALSE	499	1288	110	792	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND6--MT-TE	45	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.91	1	0.5008	0.0556	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CFPAC1_PANCREAS	0.91	1	0.5564	FALSE	499	1288	110	792	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	30	60	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	11069	0	0.01	1	0.3338	0.6677	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.01	1	1.0015	FALSE	344	827	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	37	16	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10864	0	0	1	0.4117	0.178	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0	1	0.5897	FALSE	344	827	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	TIMM23--RP11-464F9.1	39	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	238	11	0.15	0.79	0.434	0.0334	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CFPAC1_PANCREAS	0.15	0.79	0.4674	TRUE	519	3926	326	965	0	FALSE	ACH-000138
CFPAC1_PANCREAS	KANSL1--ARL17B	30	27	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	42	36	0.58	0.61	0.3338	0.3005	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	CFPAC1_PANCREAS	0.58	0.61	0.6343	TRUE	181	1564	124	196	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	15	78	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	46	2	0.67	0.98	0.1669	0.868	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.67	0.98	1.0349	FALSE	344	826	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	27	12	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	39	0	0.5	1	0.3005	0.1335	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.5	1	0.434	FALSE	344	826	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-TA--MT-TC	25	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2782	0.0668	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CFPAC1_PANCREAS	1	1	0.345	FALSE	462	80	0	856	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	4	87	MT-ND4	1483	chrM:11242:+	MT-ND4L	5492	chrM:10583:+	INCL_NON_REF_SPLICE	YES	1024	2	0.08	0.98	0.0445	0.9681	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.08	0.98	1.0126	FALSE	344	827	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	3	88	MT-ND4	1754	chrM:11513:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	NO	9111	2	0.01	0.98	0.0334	0.9793	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.01	0.98	1.0127	FALSE	344	827	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	5	80	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	50	2	0.63	0.98	0.0556	0.8902	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.63	0.98	0.9458	FALSE	344	826	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	CBWD6--IFLTD1	22	9	CBWD6	25293	chr9:69218510:-	IFLTD1	44079	chr12:25673009:-	ONLY_REF_SPLICE	YES	161	0	0.16	1	0.2448	0.1002	CBWD6->COBW_domain_containing_6,chr9:69204538-69269662:-,IFLTD1->chr12:25562241-25801513:-	CFPAC1_PANCREAS	0.16	1	0.345	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	MT-TA--MT-TC	24	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2671	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CFPAC1_PANCREAS	1	1	0.2671	FALSE	462	80	0	856	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	5	74	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	25	1	0.76	0.99	0.0556	0.8235	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.76	0.99	0.8791	FALSE	344	826	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	3	82	MT-ND4	1285	chrM:11044:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	102	1	0.45	0.99	0.0334	0.9125	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.45	0.99	0.9459	FALSE	344	827	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-TA--MT-TN	11	47	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1224	0.523	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CFPAC1_PANCREAS	1	1	0.6454	FALSE	369	2501	205	193	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	3	78	MT-ND4	1170	chrM:10929:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	YES	42	2	0.66	0.98	0.0334	0.868	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.66	0.98	0.9014	FALSE	344	826	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	CCND1--PTMA	22	0	CCND1	5984	chr11:69466002:+	PTMA	16661	chr2:232576070:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2448	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CFPAC1_PANCREAS	1	1	0.2448	TRUE	0	0	0	2	0	TRUE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	4	72	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	39	2	0.66	0.97	0.0445	0.8012	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.66	0.97	0.8457	FALSE	344	826	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	4	72	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	24	2	0.76	0.97	0.0445	0.8012	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.76	0.97	0.8457	FALSE	344	826	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	3	75	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	39	2	0.67	0.97	0.0334	0.8346	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.67	0.97	0.868	FALSE	344	826	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	15	24	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	19059	0	0	1	0.1669	0.2671	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0	1	0.434	FALSE	328	800	43	304	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	3	72	MT-ND4	1147	chrM:10906:+	MT-ND4L	5540	chrM:10631:+	INCL_NON_REF_SPLICE	YES	40	2	0.65	0.97	0.0334	0.8012	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.65	0.97	0.8346	FALSE	344	826	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	NIPA2--POLA1	21	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2337	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	CFPAC1_PANCREAS	1	1	0.2337	TRUE	46	1352	75	139	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-TA--MT-TN	11	37	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1224	0.4117	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CFPAC1_PANCREAS	1	1	0.5341	FALSE	369	2501	205	193	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	8	47	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	14	2	0.8	0.96	0.089	0.523	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.8	0.96	0.612	FALSE	344	821	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	4	61	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	16	2	0.8	0.97	0.0445	0.6788	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.8	0.97	0.7233	FALSE	344	826	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	6	48	MT-ND4	1151	chrM:10910:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	39	0	0.58	1	0.0668	0.5341	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.58	1	0.6009	FALSE	344	826	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	3	58	MT-ND4	1514	chrM:11273:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	1434	0	0.04	1	0.0334	0.6454	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.04	1	0.6788	FALSE	344	827	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	11	14	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	55	0	0.31	1	0.1224	0.1558	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.31	1	0.2782	FALSE	344	826	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	CCND1--PTMA	14	0	CCND1	5984	chr11:69466002:+	PTMA	17242	chr2:232576651:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1558	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CFPAC1_PANCREAS	1	1	0.1558	TRUE	0	0	0	2	0	TRUE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	4	39	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	39	0	0.52	1	0.0445	0.434	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.52	1	0.4785	FALSE	344	826	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	RP4-565E6.1--HYDIN	13	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	6	1	0.71	0.1447	0.0223	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	CFPAC1_PANCREAS	0.71	1	0.167	TRUE	456	1387	91	133	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-TA--MT-TN	10	11	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1113	0.1224	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CFPAC1_PANCREAS	1	1	0.2337	FALSE	369	2501	205	193	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	3	37	MT-ND4	1060	chrM:10819:+	MT-ND4L	5532	chrM:10623:+	INCL_NON_REF_SPLICE	YES	11	2	0.78	0.95	0.0334	0.4117	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.78	0.95	0.4451	FALSE	344	821	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	9	13	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	46	0	0.32	1	0.1002	0.1447	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.32	1	0.2449	FALSE	344	826	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND6--MT-TE	11	5	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.76	1	0.1224	0.0556	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CFPAC1_PANCREAS	0.76	1	0.178	FALSE	499	1288	110	792	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-TC--MT-TY	12	0	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1335	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	CFPAC1_PANCREAS	1	1	0.1335	FALSE	51	280	19	36	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ATP6--MT-CO2	11	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	89	9	0.14	0.61	0.1224	0.0334	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CFPAC1_PANCREAS	0.14	0.61	0.1558	FALSE	59	21	0	114	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-TA--MT-TN	4	30	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0445	0.3338	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CFPAC1_PANCREAS	1	1	0.3783	FALSE	369	2501	205	193	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND3--MT-ATP8	11	1	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	400	4	0.03	0.75	0.1224	0.0111	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CFPAC1_PANCREAS	0.03	0.75	0.1335	FALSE	351	233	23	137	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ATP6--MT-CO2	10	4	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	136	21	0.09	0.4	0.1113	0.0445	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CFPAC1_PANCREAS	0.09	0.4	0.1558	FALSE	59	21	0	114	0	FALSE	ACH-000138
CFPAC1_PANCREAS	CTTNBP2NL--RP11-20E24.1	9	7	CTTNBP2NL	5077	chr1:112958886:+	RP11-20E24.1	20697	chr12:77009083:+	ONLY_REF_SPLICE	YES	24	0	0.4	1	0.1002	0.0779	CTTNBP2NL->CTTNBP2_N-terminal_like,chr1:112938803-113006078:+,RP11-20E24.1->chr12:76956074-77009211:+	CFPAC1_PANCREAS	0.4	1	0.1781	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	MRPL45--GPR179	10	1	MRPL45	6883	chr17:36474634:+	GPR179	27604	chr17:36481450:-	INCL_NON_REF_SPLICE	YES	298	0	0.04	1	0.1113	0.0111	LOCAL_INVERSION:+:-:[2312],MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45,GPR179->G_protein-coupled_receptor_179,chr17:36481413-36499730:-	CFPAC1_PANCREAS	0.04	1	0.1224	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	MT-TA--MT-TN	3	29	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0.3227	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CFPAC1_PANCREAS	1	1	0.3561	FALSE	369	2501	205	193	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	6	16	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1706	0	0.01	1	0.0668	0.178	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.01	1	0.2448	FALSE	344	827	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	4	24	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1525	0	0.02	1	0.0445	0.2671	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.02	1	0.3116	FALSE	344	827	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-TC--MT-TY	5	20	MT-TC	1061	chrM:5766:-	MT-TY	4075	chrM:5883:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0556	0.2226	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	CFPAC1_PANCREAS	1	1	0.2782	FALSE	51	280	19	36	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	8	6	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	50	0	0.22	1	0.089	0.0668	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.22	1	0.1558	FALSE	344	826	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	4	21	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	50	0	0.33	1	0.0445	0.2337	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.33	1	0.2782	FALSE	344	826	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	3	24	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	10364	0	0	1	0.0334	0.2671	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0	1	0.3005	FALSE	344	827	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	OR51S1--TP53I11	9	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1002	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	CFPAC1_PANCREAS	1	1	0.1002	TRUE	402	216	10	229	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	5	14	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	6	2	0.76	0.9	0.0556	0.1558	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.76	0.9	0.2114	FALSE	344	821	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ATP6--MT-CO2	8	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	36	7	0.2	0.56	0.089	0.0111	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CFPAC1_PANCREAS	0.2	0.56	0.1001	FALSE	59	21	0	114	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND6--COX7C	8	1	MT-ND6	1261	chrM:14413:-	COX7C	4608	chr5:85913803:+	INCL_NON_REF_SPLICE	YES	7997	0	0	1	0.089	0.0111	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COX7C->chr5:85913721-85916779:+,cytochrome_c_oxidase_subunit_7C	CFPAC1_PANCREAS	0	1	0.1001	FALSE	0	0	0	7	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-TA--MT-TC	6	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0668	0.1002	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CFPAC1_PANCREAS	1	1	0.167	FALSE	462	80	0	856	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	4	16	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	971	0	0.02	1	0.0445	0.178	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.02	1	0.2225	FALSE	344	827	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-TA--MT-TN	8	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.089	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CFPAC1_PANCREAS	1	1	0.089	FALSE	369	2501	205	193	0	FALSE	ACH-000138
CFPAC1_PANCREAS	C15orf57--CBX3	7	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	52	30	0.16	0.25	0.0779	0.0334	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CFPAC1_PANCREAS	0.16	0.25	0.1113	TRUE	267	562	48	632	0	FALSE	ACH-000138
CFPAC1_PANCREAS	AGPAT3--RRP1B	7	2	AGPAT3	19617	chr21:45387996:+	RRP1B	43794	chr21:45106685:+	ONLY_REF_SPLICE	YES	96	40	0.09	0.18	0.0779	0.0223	AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+,RRP1B->chr21:45079429-45115958:+,ribosomal_RNA_processing_1B	CFPAC1_PANCREAS	0.09	0.18	0.1002	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	3	18	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	15	0	0.58	1	0.0334	0.2003	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.58	1	0.2337	FALSE	344	821	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ATP6--MT-CO2	7	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	36	21	0.18	0.28	0.0779	0.0111	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CFPAC1_PANCREAS	0.18	0.28	0.089	FALSE	59	21	0	114	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0779	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CFPAC1_PANCREAS	1	1	0.0779	FALSE	499	1288	110	792	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ATP6--MT-CO2	6	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	86	8	0.09	0.53	0.0668	0.0334	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CFPAC1_PANCREAS	0.09	0.53	0.1002	FALSE	59	21	0	114	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	5	7	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	4	1	0.75	0.92	0.0556	0.0779	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.75	0.92	0.1335	FALSE	344	821	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	RP11-96H19.1--RP11-446N19.1	5	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0556	0.0445	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CFPAC1_PANCREAS	0.9	1	0.1001	FALSE	515	4851	409	746	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ATP6--MT-CO2	5	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	89	6	0.08	0.57	0.0556	0.0334	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CFPAC1_PANCREAS	0.08	0.57	0.089	FALSE	59	21	0	114	0	FALSE	ACH-000138
CFPAC1_PANCREAS	NRIP1--AF127936.7	5	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	23	0	0.26	1	0.0556	0.0334	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CFPAC1_PANCREAS	0.26	1	0.089	FALSE	125	705	46	456	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND6--MT-TE	4	5	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.0445	0.0556	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CFPAC1_PANCREAS	0.64	1	0.1001	FALSE	499	1288	110	792	0	FALSE	ACH-000138
CFPAC1_PANCREAS	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0556	0.0111	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CFPAC1_PANCREAS	0.67	1	0.0667	FALSE	292	1546	117	613	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND6--MT-TE	5	0	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0556	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CFPAC1_PANCREAS	1	1	0.0556	FALSE	499	1288	110	792	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND3--MT-ATP8	4	3	MT-ND3	1255	chrM:10313:+	MT-ATP8	4437	chrM:8456:+	INCL_NON_REF_SPLICE	NO	18	0	0.28	1	0.0445	0.0334	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CFPAC1_PANCREAS	0.28	1	0.0779	FALSE	351	233	23	137	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-TA--MT-TC	3	7	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0.0779	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CFPAC1_PANCREAS	1	1	0.1113	FALSE	462	80	0	856	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	3	6	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	52	0	0.15	1	0.0334	0.0668	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.15	1	0.1002	FALSE	344	826	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	CCDC122--ENOX1	4	1	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.0445	0.0111	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	CFPAC1_PANCREAS	0.36	1	0.0556	FALSE	39	52	2	34	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ATP6--MT-CO2	4	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	66	8	0.07	0.38	0.0445	0.0111	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CFPAC1_PANCREAS	0.07	0.38	0.0556	FALSE	59	21	0	114	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND3--MT-ATP8	4	1	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	NO	193	0	0.03	1	0.0445	0.0111	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CFPAC1_PANCREAS	0.03	1	0.0556	FALSE	351	233	23	137	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND6--MT-TE	3	5	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	5	0	0.62	1	0.0334	0.0556	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CFPAC1_PANCREAS	0.62	1	0.089	FALSE	499	1288	110	792	0	FALSE	ACH-000138
CFPAC1_PANCREAS	RPSAP52--HMGA2	4	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	11	205	0.31	0.02	0.0445	0.0111	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	CFPAC1_PANCREAS	0.02	0.31	0.0556	FALSE	0	59	0	125	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	4	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0445	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	1	1	0.0445	FALSE	344	821	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0445	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CFPAC1_PANCREAS	1	1	0.0445	FALSE	369	2501	205	193	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ATP6--MT-CO2	3	3	MT-ATP6	1150	chrM:8676:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	90	7	0.06	0.46	0.0334	0.0334	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CFPAC1_PANCREAS	0.06	0.46	0.0668	FALSE	59	21	0	114	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ATP6--MT-CO2	3	3	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	90	6	0.06	0.5	0.0334	0.0334	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CFPAC1_PANCREAS	0.06	0.5	0.0668	FALSE	59	21	0	114	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ATP6--MT-CO2	3	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	89	6	0.06	0.5	0.0334	0.0334	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CFPAC1_PANCREAS	0.06	0.5	0.0668	FALSE	59	21	0	114	0	FALSE	ACH-000138
CFPAC1_PANCREAS	RP11-114H23.1--RP11-114H23.2	3	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0334	0.0334	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CFPAC1_PANCREAS	0.86	1	0.0668	FALSE	81	155	12	160	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND4--MT-ND4L	3	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	1	1	0.83	0.83	0.0334	0.0223	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CFPAC1_PANCREAS	0.83	0.83	0.0557	FALSE	344	821	44	306	0	FALSE	ACH-000138
CFPAC1_PANCREAS	NCOA2--SNTG1	3	2	NCOA2	28633	chr8:71033537:-	SNTG1	56746	chr8:51569469:+	ONLY_REF_SPLICE	YES	7	0	0.42	1	0.0334	0.0223	{Klijn_CCL:Pancreas=1},NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,SNTG1->chr8:50822349-51706678:+,syntrophin_gamma_1	CFPAC1_PANCREAS	0.42	1	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	FGFR2--COL14A1	3	1	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	25	0	0.14	1	0.0334	0.0111	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	CFPAC1_PANCREAS	0.14	1	0.0445	TRUE	0	0	0	32	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ATP6--MT-CO2	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	67	14	0.06	0.22	0.0334	0.0111	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CFPAC1_PANCREAS	0.06	0.22	0.0445	FALSE	59	21	0	114	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND3--MT-ATP8	3	1	MT-ND3	1048	chrM:10106:+	MT-ATP8	4405	chrM:8424:+	INCL_NON_REF_SPLICE	NO	193	0	0.02	1	0.0334	0.0111	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CFPAC1_PANCREAS	0.02	1	0.0445	FALSE	351	233	23	137	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND6--COX7C	3	1	MT-ND6	1248	chrM:14426:-	COX7C	4593	chr5:85913788:+	INCL_NON_REF_SPLICE	YES	7921	0	0	1	0.0334	0.0111	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COX7C->chr5:85913721-85916779:+,cytochrome_c_oxidase_subunit_7C	CFPAC1_PANCREAS	0	1	0.0445	FALSE	0	0	0	7	0	FALSE	ACH-000138
CFPAC1_PANCREAS	NRIP1--AF127936.7	2	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	31	0	0.18	1	0.0223	0.0556	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CFPAC1_PANCREAS	0.18	1	0.0779	FALSE	164	806	69	479	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CFPAC1_PANCREAS	1	1	0.0334	FALSE	499	1288	110	792	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CFPAC1_PANCREAS	1	1	0.0334	FALSE	499	1288	110	792	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-TA--MT-TN	3	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CFPAC1_PANCREAS	1	1	0.0334	FALSE	369	2501	205	193	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-TA--MT-TN	3	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CFPAC1_PANCREAS	1	1	0.0334	FALSE	369	2501	205	193	0	FALSE	ACH-000138
CFPAC1_PANCREAS	MT-TC--MT-TY	3	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	CFPAC1_PANCREAS	1	1	0.0334	FALSE	51	280	19	36	0	FALSE	ACH-000138
CFPAC1_PANCREAS	RP11-155G15.2--RP11-1E3.1	3	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	CFPAC1_PANCREAS	1	1	0.0334	FALSE	46	201	11	112	0	FALSE	ACH-000138
CFPAC1_PANCREAS	RRP7B--ANXA2	3	0	RRP7B	1110	chr22:42977935:-	ANXA2	31956	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	RRP7B->chr22:42951229-42978044:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	CFPAC1_PANCREAS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	CTTNBP2NL--ZDHHC17	2	3	CTTNBP2NL	5077	chr1:112958886:+	ZDHHC17	22989	chr12:77191214:+	ONLY_REF_SPLICE	YES	24	5	0.17	0.5	0.0223	0.0334	CTTNBP2NL->CTTNBP2_N-terminal_like,chr1:112938803-113006078:+,ZDHHC17->chr12:77157368-77247476:+,zinc_finger_DHHC-type_containing_17	CFPAC1_PANCREAS	0.17	0.5	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	VTI1A--RP11-57H14.3	2	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	27	0	0.1	1	0.0223	0.0111	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	CFPAC1_PANCREAS	0.1	1	0.0334	FALSE	272	151	14	158	0	FALSE	ACH-000138
CFPAC1_PANCREAS	AC007879.5--AC007879.2	2	0	AC007879.5	5459	chr2:208197365:-	AC007879.2	16270	chr2:208051712:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NEIGHBORS[3798],AC007879.5->chr2:208104588-208394519:-,AC007879.2->chr2:208051441-208100790:-	CFPAC1_PANCREAS	1	1	0.0223	FALSE	0	1	0	1	0	FALSE	ACH-000138
CFPAC1_PANCREAS	AC009133.12--ALDOA	2	0	AC009133.12	2437	chr16:29830861:-	ALDOA	14780	chr16:30078555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	AC009133.12->chr16:29829301-29832573:-,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	AFAP1--ANKRD54	2	0	AFAP1	1271	chr4:7941383:-	ANKRD54	37280	chr22:38236241:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ANKRD54->ankyrin_repeat_domain_54,chr22:38226862-38245334:-	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	AFF1--LARS	2	0	AFF1	3385	chr4:87869723:+	LARS	38934	chr5:145552337:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	APOOL--SMEK1	2	0	APOOL	1102	chrX:84258933:+	SMEK1	14491	chr14:91957146:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	APOOL->apolipoprotein_O_like,chrX:84258832-84343069:+,SMEK1->chr14:91923955-91976898:-	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	BRAT1--NPEPPS	2	0	BRAT1	3540	chr7:2586958:-	NPEPPS	43298	chr17:45697103:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	BRAT1->BRCA1_associated_ATM_activator_1,Oncogene{Bushman},chr7:2577511-2595361:-,NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	BTBD3--LEPRE1	2	0	BTBD3	1232	chr20:11871602:+	LEPRE1	16458	chr1:43228146:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	BTBD3->BTB_domain_containing_3,chr20:11871371-11907257:+,LEPRE1->chr1:43212006-43232755:-	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	FBXL8--SLC44A4	2	0	FBXL8	2944	chr16:67195840:+	SLC44A4	15820	chr6:31837414:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	FBXL8->F-box_and_leucine-rich_repeat_protein_8,chr16:67193834-67198473:+,SLC44A4->Oncogene{Bushman},chr6:31830969-31846823:-,solute_carrier_family_44_member_4	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	5	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	HNRNPA2B1--SUPT6H	2	0	HNRNPA2B1	1958	chr7:26240192:-	SUPT6H	17777	chr17:27000389:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx&tcga_normals:1/3694=0.03%,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	LMAN1--PSMB1	2	0	LMAN1	11584	chr18:57005789:-	PSMB1	23543	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LMAN1->chr18:56995055-57027194:-,lectin,_mannose_binding_1,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	MEIS1--RTN4	2	0	MEIS1	22370	chr2:66795888:+	RTN4	44279	chr2:55214834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	MEIS1->Meis_homeobox_1,Oncogene{Bushman},chr2:66660584-66801001:+,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	NRP1--EPC1	2	0	NRP1	4012	chr10:33619636:-	EPC1	41336	chr10:32594859:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NRP1->chr10:33466420-33625190:-,neuropilin_1,EPC1->chr10:32556679-32667726:-,enhancer_of_polycomb_homolog_1	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	STAG2--LRRC20	2	0	STAG2	2645	chrX:123095706:+	LRRC20	50823	chr10:72083786:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,LRRC20->chr10:72058729-72142382:-,leucine_rich_repeat_containing_20	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	WASH5P--GS1-251I9.4	2	0	WASH5P	3129	chr19:66346:-	GS1-251I9.4	15650	chr8:92075974:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	WASH5P->WAS_protein_family_homolog_5_pseudogene,chr19:60105-71626:-,GS1-251I9.4->chr8:92072137-92082417:-	CFPAC1_PANCREAS	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000138
CFPAC1_PANCREAS	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0111	0.0334	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CFPAC1_PANCREAS	1	1	0.0445	TRUE	477	1352	189	275	0	FALSE	ACH-000138
CFPAC1_PANCREAS	C19orf25--DAZAP1	1	1	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	23	156	0.08	0.01	0.0111	0.0111	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	CFPAC1_PANCREAS	0.01	0.08	0.0222	FALSE	6	7	1	24	0	FALSE	ACH-000138
CFPAC1_PANCREAS	DNAJB6--PKM	1	1	DNAJB6	20269	chr7:157178305:+	PKM	42095	chr15:72502200:-	ONLY_REF_SPLICE	YES	452	3643	0	0	0.0111	0.0111	DNAJB6->DnaJ_heat_shock_protein_family_(Hsp40)_member_B6,chr7:157128075-157210133:+,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	CFPAC1_PANCREAS	0	0	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000138
CFPAC1_PANCREAS	SMARCAL1--CETN3	1	1	SMARCAL1	4894	chr2:217281030:+	CETN3	27393	chr5:89703651:-	ONLY_REF_SPLICE	YES	32	75	0.06	0.03	0.0111	0.0111	SMARCAL1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a-like_1,chr2:217277137-217347776:+,CETN3->centrin_3,chr5:89688078-89705603:-	CFPAC1_PANCREAS	0.03	0.06	0.0222	TRUE	0	0	0	1	0	FALSE	ACH-000138
HS675T_FIBROBLAST	COL1A2--COL4A1	199	3	COL1A2	24903	chr7:94052422:+	COL4A1	41696	chr13:110862361:-	INCL_NON_REF_SPLICE	YES	6346	306	0.03	0.4	2.0145	0.0304	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS675T_FIBROBLAST	0.03	0.4	2.0449	TRUE	0	0	0	1	0	FALSE	ACH-000214
HS675T_FIBROBLAST	TIMM23B--LINC00843	114	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1541	0.243	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS675T_FIBROBLAST	1	1	1.3971	TRUE	508	994	45	981	0	FALSE	ACH-000214
HS675T_FIBROBLAST	TIMM23--RP11-464F9.1	72	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	152	1	0.33	0.99	0.7289	0.0405	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS675T_FIBROBLAST	0.33	0.99	0.7694	TRUE	519	3926	326	965	0	FALSE	ACH-000214
HS675T_FIBROBLAST	OR51S1--TP53I11	54	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5467	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HS675T_FIBROBLAST	1	1	0.5467	TRUE	402	216	10	229	0	FALSE	ACH-000214
HS675T_FIBROBLAST	RP11-680G10.1--GSE1	47	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	17	1	0.76	0.4758	0.081	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS675T_FIBROBLAST	0.76	1	0.5568	TRUE	465	1949	224	605	0	FALSE	ACH-000214
HS675T_FIBROBLAST	RP11-680G10.1--GSE1	36	13	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.98	0.3644	0.1316	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS675T_FIBROBLAST	0.98	1	0.496	TRUE	458	1351	185	561	0	FALSE	ACH-000214
HS675T_FIBROBLAST	MT-TA--MT-TC	31	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3138	0.0304	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS675T_FIBROBLAST	1	1	0.3442	FALSE	462	80	0	856	0	FALSE	ACH-000214
HS675T_FIBROBLAST	PLXDC1--TAF13	25	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2531	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS675T_FIBROBLAST	1	1	0.2531	TRUE	7	10	0	216	0	FALSE	ACH-000214
HS675T_FIBROBLAST	MT-ND6--MT-TE	22	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2227	0.0405	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS675T_FIBROBLAST	1	1	0.2632	FALSE	499	1288	110	792	0	FALSE	ACH-000214
HS675T_FIBROBLAST	MT-ND6--MT-TE	21	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2126	0.0405	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS675T_FIBROBLAST	1	1	0.2531	FALSE	499	1288	110	792	0	FALSE	ACH-000214
HS675T_FIBROBLAST	KANSL1--ARL17B	17	7	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	18	29	0.57	0.45	0.1721	0.0709	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HS675T_FIBROBLAST	0.45	0.57	0.243	TRUE	181	1564	124	196	0	FALSE	ACH-000214
HS675T_FIBROBLAST	C15orf57--CBX3	17	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	42	9	0.34	0.71	0.1721	0.0506	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS675T_FIBROBLAST	0.34	0.71	0.2227	TRUE	267	562	48	632	0	FALSE	ACH-000214
HS675T_FIBROBLAST	IGFBP4--NPM1	15	2	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	2387	2	0.01	0.89	0.1519	0.0202	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HS675T_FIBROBLAST	0.01	0.89	0.1721	TRUE	0	0	0	38	0	FALSE	ACH-000214
HS675T_FIBROBLAST	SPG11--MRPL52	15	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1519	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	HS675T_FIBROBLAST	1	1	0.1519	TRUE	38	11	0	19	0	FALSE	ACH-000214
HS675T_FIBROBLAST	F3--S100A6	12	3	F3	1194	chr1:95007163:-	S100A6	11318	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	2666	1	0.01	0.94	0.1215	0.0304	F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HS675T_FIBROBLAST	0.01	0.94	0.1519	TRUE	0	0	0	3	0	FALSE	ACH-000214
HS675T_FIBROBLAST	MT-ND6--MT-TE	9	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0911	0.1316	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS675T_FIBROBLAST	1	1	0.2227	FALSE	499	1288	110	792	0	FALSE	ACH-000214
HS675T_FIBROBLAST	RP11-444D3.1--SOX5	10	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1012	0.0101	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS675T_FIBROBLAST	1	1	0.1113	TRUE	477	1352	189	275	0	FALSE	ACH-000214
HS675T_FIBROBLAST	PRR16--CTD-2334D19.1	8	7	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	93	0	0.14	1	0.081	0.0709	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS675T_FIBROBLAST	0.14	1	0.1519	FALSE	56	216	12	147	0	FALSE	ACH-000214
HS675T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	8	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.081	0.0607	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS675T_FIBROBLAST	0.88	1	0.1417	FALSE	515	4851	409	746	0	FALSE	ACH-000214
HS675T_FIBROBLAST	MT-ND3--MT-ATP8	8	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.081	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS675T_FIBROBLAST	1	1	0.081	FALSE	351	233	23	137	0	FALSE	ACH-000214
HS675T_FIBROBLAST	RP11-334E6.12--MT2A	5	12	RP11-334E6.12	2039	chr11:119289699:+	MT2A	5557	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	347	0	0.05	1	0.0506	0.1215	RP11-334E6.12->chr11:119288661-119289824:+,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS675T_FIBROBLAST	0.05	1	0.1721	TRUE	0	0	0	7	0	TRUE	ACH-000214
HS675T_FIBROBLAST	RP11-334E6.12--MT2A	5	10	RP11-334E6.12	2052	chr11:119289712:+	MT2A	5570	chr16:56642516:+	INCL_NON_REF_SPLICE	YES	243	1	0.06	0.94	0.0506	0.1012	RP11-334E6.12->chr11:119288661-119289824:+,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS675T_FIBROBLAST	0.06	0.94	0.1518	TRUE	0	0	0	7	0	TRUE	ACH-000214
HS675T_FIBROBLAST	SERPINE1--MT-ND4	7	1	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	1108	10073	0.01	0	0.0709	0.0101	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HS675T_FIBROBLAST	0	0.01	0.081	FALSE	1	0	0	29	0	FALSE	ACH-000214
HS675T_FIBROBLAST	MT-ND6--COL12A1	7	0	MT-ND6	1333	chrM:14341:-	COL12A1	45529	chr6:75828831:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0709	0	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	HS675T_FIBROBLAST	1	1	0.0709	FALSE	0	0	0	1	0	FALSE	ACH-000214
HS675T_FIBROBLAST	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0.0304	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS675T_FIBROBLAST	1	1	0.0911	FALSE	462	80	0	856	0	FALSE	ACH-000214
HS675T_FIBROBLAST	NRIP1--AF127936.7	6	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.0607	0.0304	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS675T_FIBROBLAST	0.6	1	0.0911	FALSE	125	705	46	456	0	FALSE	ACH-000214
HS675T_FIBROBLAST	FLNA--PLAT	6	2	FLNA	11095	chrX:153588749:-	PLAT	38024	chr8:42038150:-	INCL_NON_REF_SPLICE	YES	1150	8407	0.01	0	0.0607	0.0202	FLNA->chrX:153576892-153603006:-,filamin_A,PLAT->chr8:42032236-42065242:-,plasminogen_activator,_tissue_type	HS675T_FIBROBLAST	0	0.01	0.0809	FALSE	0	0	0	1	0	FALSE	ACH-000214
HS675T_FIBROBLAST	MT-ND6--MT-TE	4	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0.1012	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS675T_FIBROBLAST	1	1	0.1417	FALSE	499	1288	110	792	0	FALSE	ACH-000214
HS675T_FIBROBLAST	MT-ND6--MT-TE	3	13	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0304	0.1316	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS675T_FIBROBLAST	0.94	1	0.162	FALSE	499	1288	110	792	0	FALSE	ACH-000214
HS675T_FIBROBLAST	CTD-2337A12.1--CAST	6	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0607	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS675T_FIBROBLAST	1	1	0.0607	TRUE	347	1186	183	220	0	FALSE	ACH-000214
HS675T_FIBROBLAST	CTGF--TNFRSF11B	6	0	CTGF	1150	chr6:132272364:-	TNFRSF11B	7529	chr8:119964109:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,TNFRSF11B->Oncogene{Bushman},chr8:119935796-119964439:-,tumor_necrosis_factor_receptor_superfamily_member_11b	HS675T_FIBROBLAST	1	1	0.0607	TRUE	0	0	0	1	0	TRUE	ACH-000214
HS675T_FIBROBLAST	F3--S100A6	5	4	F3	1208	chr1:95007149:-	S100A6	11335	chr1:153508450:-	INCL_NON_REF_SPLICE	YES	2697	5	0	0.64	0.0506	0.0405	F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HS675T_FIBROBLAST	0	0.64	0.0911	FALSE	0	0	0	3	0	FALSE	ACH-000214
HS675T_FIBROBLAST	PRR16--CTD-2334D19.1	4	8	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	28	0	0.3	1	0.0405	0.081	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS675T_FIBROBLAST	0.3	1	0.1215	FALSE	21	45	1	60	0	FALSE	ACH-000214
HS675T_FIBROBLAST	TPM2--ACTG1	6	0	TPM2	4592	chr9:35685061:-	ACTG1	14213	chr17:79478652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0607	0	GTEx&tcga_normals:114/3694=3.09%,GTEx:2.09%,GTEx_FI:{Blood_Vessel=[count:158=pct:42.8],Esophagus=[count:132=pct:32.6],Colon=[count:59=pct:30.9],Heart=[count:15=pct:6.0],Prostate=[count:9=pct:14.8],Stomach=[count:8=pct:9.0],Adipose_Tissue=[count:6=pct:2.0],Uterus=[count:4=pct:9.3],Small_Intestine=[count:3=pct:5.5],Vagina=[count:3=pct:5.5],Bladder=[count:2=pct:22.2],Lung=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Breast=[count:1=pct:0.9],_not_provided_=[count:1=pct:100.0],Fallopian_Tube=[count:1=pct:16.7],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=484;pct=5.59%;dist=Artery_-_Tibial=130,Esophagus_-_Muscularis=91,Esophagus_-_Gastroesophageal_Junction=56,Colon_-_Sigmoid=48,Artery_-_Coronary=29,Artery_-_Aorta=28,Colon_-_Transverse=23,Stomach=15,Adipose_-_Subcutaneous=13,Prostate=10,Uterus=8,Esophagus_-_Mucosa=6,Small_Intestine_-_Terminal_Ileum=5,Heart_-_Left_Ventricle=5,Heart_-_Atrial_Appendage=5,Breast_-_Mammary_Tissue=2,Vagina=2,Bladder=2,Ovary=1,Lung=1,Adipose_-_Visceral_(Omentum)=1,Muscle_-_Skeletal=1,Cells_-_Transformed_fibroblasts=1,Fallopian_Tube=1},TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HS675T_FIBROBLAST	1	1	0.0607	TRUE	237	57	25	9	0	FALSE	ACH-000214
HS675T_FIBROBLAST	NRIP1--AF127936.7	5	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0506	0.0304	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS675T_FIBROBLAST	0.8	1	0.081	FALSE	292	1546	117	613	0	FALSE	ACH-000214
HS675T_FIBROBLAST	DNAJC25--UGCG	5	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0506	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	HS675T_FIBROBLAST	1	1	0.0506	TRUE	50	73	10	50	0	FALSE	ACH-000214
HS675T_FIBROBLAST	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS675T_FIBROBLAST	1	1	0.0506	FALSE	499	1288	110	792	0	FALSE	ACH-000214
HS675T_FIBROBLAST	EEF2--MT2A	4	3	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	1579	0	0	1	0.0405	0.0304	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS675T_FIBROBLAST	0	1	0.0709	FALSE	1	0	0	19	0	FALSE	ACH-000214
HS675T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0.0607	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS675T_FIBROBLAST	1	1	0.0911	FALSE	467	2173	244	435	0	FALSE	ACH-000214
HS675T_FIBROBLAST	COL1A2--COL4A1	3	5	COL1A2	27439	chr7:94054958:+	COL4A1	48566	chr13:110853218:-	INCL_NON_REF_SPLICE	NO	5766	257	0	0.03	0.0304	0.0506	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS675T_FIBROBLAST	0	0.03	0.081	FALSE	0	0	0	2	0	FALSE	ACH-000214
HS675T_FIBROBLAST	RP11-334E6.12--MT2A	3	5	RP11-334E6.12	2086	chr11:119289746:+	MT2A	5593	chr16:56642539:+	INCL_NON_REF_SPLICE	YES	2	2	0.8	0.8	0.0304	0.0506	RP11-334E6.12->chr11:119288661-119289824:+,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS675T_FIBROBLAST	0.8	0.8	0.081	TRUE	0	0	0	7	0	TRUE	ACH-000214
HS675T_FIBROBLAST	IGFBP7--MT-ND4L	4	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS675T_FIBROBLAST	1	1	0.0405	FALSE	1	0	0	30	0	FALSE	ACH-000214
HS675T_FIBROBLAST	IGFBP7--MT-ND4L	4	0	IGFBP7	1109	chr4:57976443:-	MT-ND4L	10357	chrM:10551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS675T_FIBROBLAST	1	1	0.0405	FALSE	1	0	0	30	0	FALSE	ACH-000214
HS675T_FIBROBLAST	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS675T_FIBROBLAST	1	1	0.0405	FALSE	499	1288	110	792	0	FALSE	ACH-000214
HS675T_FIBROBLAST	VIM--FTH1	4	0	VIM	2083	chr10:17271340:+	FTH1	12349	chr11:61734988:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	HS675T_FIBROBLAST	1	1	0.0405	TRUE	0	0	0	6	0	TRUE	ACH-000214
HS675T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0202	0.0709	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS675T_FIBROBLAST	0.82	1	0.0911	FALSE	407	2205	196	549	0	FALSE	ACH-000214
HS675T_FIBROBLAST	MXRA8--GAPDH	3	0	MXRA8	5511	chr1:1290198:-	GAPDH	14002	chr12:6646478:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	MXRA8->chr1:1288069-1297157:-,matrix-remodelling_associated_8,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	HS675T_FIBROBLAST	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000214
HS675T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0101	0.0709	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS675T_FIBROBLAST	1	1	0.081	FALSE	192	492	57	212	0	FALSE	ACH-000214
HS675T_FIBROBLAST	CD44--PDHX	2	2	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	4763	110	0	0.04	0.0202	0.0202	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HS675T_FIBROBLAST	0	0.04	0.0404	FALSE	0	20	0	35	2	FALSE	ACH-000214
HS675T_FIBROBLAST	PLAT--SPARC	2	1	PLAT	10777	chr8:42042599:-	SPARC	25112	chr5:151055762:-	ONLY_REF_SPLICE	YES	8642	105	0	0.03	0.0202	0.0101	PLAT->chr8:42032236-42065242:-,plasminogen_activator,_tissue_type,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS675T_FIBROBLAST	0	0.03	0.0303	FALSE	0	0	0	1	0	FALSE	ACH-000214
HS675T_FIBROBLAST	COL6A2--COL1A2	2	0	COL6A2	7243	chr21:47536317:+	COL1A2	31190	chr7:94035562:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},HGNC_GENEFAM,PROTCLUST,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS675T_FIBROBLAST	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000214
HS675T_FIBROBLAST	DIP2B--CLIC4	2	0	DIP2B	1256	chr12:50899023:+	CLIC4	51032	chr1:25124233:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B,CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+	HS675T_FIBROBLAST	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000214
HS675T_FIBROBLAST	NRIP1--AF127936.7	1	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	7	0	0.42	1	0.0101	0.0405	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS675T_FIBROBLAST	0.42	1	0.0506	FALSE	164	806	69	479	0	FALSE	ACH-000214
HS675T_FIBROBLAST	RP3-510D11.1--GNAS	2	0	RP3-510D11.1	3450	chr1:9242066:-	GNAS	22287	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	RP3-510D11.1->chr1:9242066-9262678:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HS675T_FIBROBLAST	1	1	0.0202	TRUE	0	0	0	2	0	TRUE	ACH-000214
HS675T_FIBROBLAST	MYO10--BASP1	1	2	MYO10	21134	chr5:16754937:-	BASP1	57021	chr5:17275317:+	ONLY_REF_SPLICE	YES	148	920	0.02	0	0.0101	0.0202	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},MYO10->chr5:16665395-16936372:-,myosin_X,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	HS675T_FIBROBLAST	0	0.02	0.0303	FALSE	0	0	0	2	0	FALSE	ACH-000214
HS675T_FIBROBLAST	CD44--PDHX	1	1	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	4199	110	0	0.02	0.0101	0.0101	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HS675T_FIBROBLAST	0	0.02	0.0202	FALSE	0	7	0	19	1	FALSE	ACH-000214
HS675T_FIBROBLAST	F3--SPG7	1	1	F3	1264	chr1:95007093:-	SPG7	29909	chr16:89611056:+	ONLY_REF_SPLICE	NO	2841	104	0	0.02	0.0101	0.0101	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Head-Neck=2,Breast=1},F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	HS675T_FIBROBLAST	0	0.02	0.0202	FALSE	0	0	0	8	0	FALSE	ACH-000214
HS675T_FIBROBLAST	PLAT--SPARC	1	1	PLAT	14392	chr8:42038008:-	SPARC	25112	chr5:151055762:-	ONLY_REF_SPLICE	NO	8976	105	0	0.02	0.0101	0.0101	PLAT->chr8:42032236-42065242:-,plasminogen_activator,_tissue_type,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS675T_FIBROBLAST	0	0.02	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000214
HS675T_FIBROBLAST	SCARB1--UBC	1	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	88	42	0.02	0.05	0.0101	0.0101	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	HS675T_FIBROBLAST	0.02	0.05	0.0202	TRUE	55	66	6	101	0	FALSE	ACH-000214
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRMT10C--POU2F3	202	77	TRMT10C	1142	chr3:101280847:+	POU2F3	12402	chr11:120170333:+	ONLY_REF_SPLICE	YES	65	0	0.81	1	1.8057	0.6883	TRMT10C->chr3:101280706-101285290:+,tRNA_methyltransferase_10C,_mitochondrial_RNase_P_subunit,POU2F3->POU_class_2_homeobox_3,chr11:120107349-120190653:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	2.494	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	183	21	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	3	0	0.99	1	1.6358	0.1877	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.8235	TRUE	0	3	0	38	3	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS6--IGH@	139	0	GAS6	15800	chr13:114525073:-	IGH@	118693	chr14:106312014:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2425	0	GTEx_FI:{Colon=[count:1=pct:0.5],Salivary_Gland=[count:1=pct:2.6]},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,IGH@->Oncogene{Bushman}	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2425	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	99	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.885	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.885	FALSE	369	2501	205	193	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLIP1--RILPL2	72	28	CLIP1	9296	chr12:122845506:-	RILPL2	44521	chr12:123915206:-	ONLY_REF_SPLICE	YES	31	44	0.76	0.69	0.6436	0.2503	{Klijn_CCL:Lymphoid=1},CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-,RILPL2->Rab_interacting_lysosomal_protein_like_2,chr12:123899936-123921264:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.76	0.8939	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	57	42	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	4	0	0.96	1	0.5095	0.3754	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.8849	TRUE	0	5	0	45	5	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	54	19	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	1	1	0.99	0.99	0.4827	0.1698	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	0.99	0.6525	TRUE	0	48	0	65	48	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-603B24.1--HERC2P3	51	30	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4559	0.2682	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7241	TRUE	27	10	1	20	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	50	9	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.447	0.0805	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5275	TRUE	508	994	45	981	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FLNA--IGH@	51	2	FLNA	20649	chrX:153578017:-	IGH@	123888	chr14:106311242:-	INCL_NON_REF_SPLICE	NO	317	22661	0.14	0	0.4559	0.0179	FLNA->chrX:153576892-153603006:-,filamin_A,IGH@->Oncogene{Bushman}	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.14	0.4738	FALSE	0	0	0	1	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	43	33	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	189	11	0.29	0.87	0.3844	0.295	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.87	0.6794	TRUE	267	562	48	632	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	50	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.447	0.0447	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.4917	FALSE	499	1288	110	792	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	42	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3754	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3754	TRUE	0	0	0	518	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	39	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3486	0.0447	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3933	FALSE	462	80	0	856	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2C--CTBP2P1	38	5	KMT2C	8616	chr7:151970790:-	CTBP2P1	74892	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	38	0	0.53	1	0.3397	0.0447	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	1	0.3844	TRUE	0	1	0	4	1	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	34	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	77	6	0.32	0.86	0.3039	0.0179	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.86	0.3218	TRUE	519	3926	326	965	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	28	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.2503	0.1073	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.3576	FALSE	499	1288	110	792	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--RPLP1	28	11	IGL@	54703	chr22:23165492:+	RPLP1	74774	chr15:69745157:+	INCL_NON_REF_SPLICE	YES	10405	0	0	1	0.2503	0.0983	IGL@->Oncogene{Bushman},RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3486	TRUE	0	0	0	1	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	24	24	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	174	11	0.22	0.81	0.2145	0.2145	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.81	0.429	TRUE	267	562	48	632	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOCAD--RP11-399D6.2	27	8	FOCAD	23993	chr9:20867011:+	RP11-399D6.2	67540	chr9:22723308:+	ONLY_REF_SPLICE	YES	57	1	0.38	0.97	0.2414	0.0715	FOCAD->chr9:20658308-20995954:+,focadhesin,RP11-399D6.2->chr9:22646199-22824212:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.97	0.3129	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	25	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2235	0.0536	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.2771	FALSE	499	1288	110	792	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYEOV--KIAA0125	21	11	MYEOV	1439	chr11:69062043:+	KIAA0125	15473	chr14:106386922:+	ONLY_REF_SPLICE	YES	326	0	0.09	1	0.1877	0.0983	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,KIAA0125->KIAA0125,chr14:106383838-106391825:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.286	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	22	5	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	4	0	0.87	1	0.1967	0.0447	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	0.2414	FALSE	20	187	4	79	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	10	44	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0894	0.3933	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4827	FALSE	369	2501	205	193	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	12	28	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1073	0.2503	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3576	FALSE	369	2501	205	193	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTF1--ASRGL1	16	11	RTF1	16305	chr15:41770823:+	ASRGL1	26120	chr11:62123797:+	ONLY_REF_SPLICE	YES	111	49	0.2	0.36	0.143	0.0983	RTF1->RTF1_homolog,_Paf1/RNA_polymerase_II_complex_component,chr15:41700606-41775761:+,ASRGL1->asparaginase_like_1,chr11:62104920-62160882:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.36	0.2413	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	11	22	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.0983	0.1967	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.295	TRUE	0	35	0	55	35	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	36	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0.3218	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3754	FALSE	369	2501	205	193	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FLNA--IGH@	13	3	FLNA	20751	chrX:153577915:-	IGH@	123123	chr14:106312007:-	INCL_NON_REF_SPLICE	NO	341	7815	0.04	0	0.1162	0.0268	FLNA->chrX:153576892-153603006:-,filamin_A,IGH@->Oncogene{Bushman}	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.143	FALSE	0	0	0	1	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	13	1	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	1	1	0.93	0.93	0.1162	0.0089	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.93	0.1251	TRUE	0	16	0	53	13	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	13	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1162	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1162	TRUE	0	0	0	100	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	6	27	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	174	11	0.16	0.75	0.0536	0.2414	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.75	0.295	TRUE	267	562	48	632	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	9	15	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0805	0.1341	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2146	FALSE	369	2501	205	193	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	11	3	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	3	23	0.82	0.38	0.0983	0.0268	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.82	0.1251	TRUE	0	1	0	21	1	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	20	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0536	0.1788	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.2324	FALSE	499	1288	110	792	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	10	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0894	0.0358	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1252	FALSE	462	80	0	856	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	8	10	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	3	3	0.86	0.86	0.0715	0.0894	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	0.86	0.1609	TRUE	0	1	0	26	1	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	10	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	4	1	0.73	0.92	0.0894	0.0089	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.92	0.0983	FALSE	33	240	4	98	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0805	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0805	FALSE	462	80	0	856	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRMT10C--POU2F3	1	32	TRMT10C	1142	chr3:101280847:+	POU2F3	14888	chr11:120172995:+	ONLY_REF_SPLICE	YES	65	10	0.34	0.77	0.0089	0.286	TRMT10C->chr3:101280706-101285290:+,tRNA_methyltransferase_10C,_mitochondrial_RNase_P_subunit,POU2F3->POU_class_2_homeobox_3,chr11:120107349-120190653:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.77	0.2949	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	3	23	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	8	0	0.76	1	0.0268	0.2056	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.2324	TRUE	0	0	0	21	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0626	0.0447	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1073	FALSE	462	80	0	856	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	8	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0715	FALSE	369	2501	205	193	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	8	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0715	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0715	FALSE	292	1546	117	613	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	7	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0626	0.0268	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.0894	FALSE	515	4851	409	746	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	7	2	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.0626	0.0179	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	0.0805	TRUE	0	1	0	84	1	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	7	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.0626	0.0179	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	0.0805	TRUE	0	1	0	84	1	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYEOV--KIAA0125	4	12	MYEOV	5305	chr11:69066895:+	KIAA0125	15473	chr14:106386922:+	ONLY_REF_SPLICE	YES	27	0	0.37	1	0.0358	0.1073	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,KIAA0125->KIAA0125,chr14:106383838-106391825:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	1	0.1431	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLIP1--RILPL2	4	11	CLIP1	9296	chr12:122845506:-	RILPL2	45673	chr12:123907704:-	ONLY_REF_SPLICE	YES	31	58	0.33	0.21	0.0358	0.0983	{Klijn_CCL:Lymphoid=1},CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-,RILPL2->Rab_interacting_lysosomal_protein_like_2,chr12:123899936-123921264:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.33	0.1341	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FLNA--IGH@	6	3	FLNA	20745	chrX:153577921:-	IGH@	123117	chr14:106312013:-	INCL_NON_REF_SPLICE	YES	328	7988	0.03	0	0.0536	0.0268	FLNA->chrX:153576892-153603006:-,filamin_A,IGH@->Oncogene{Bushman}	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0804	FALSE	0	0	0	1	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	3	15	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0.1341	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1609	FALSE	369	2501	205	193	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	FALSE	369	2501	205	193	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--RHOA	6	0	RCC1	2175	chr1:28834672:+	RHOA	22152	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0536	0	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	0	1	0	6	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	4	7	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	4	23	0.73	0.32	0.0358	0.0626	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.73	0.0984	TRUE	0	1	0	24	1	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	1	18	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	4	3	0.83	0.86	0.0089	0.1609	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.86	0.1698	TRUE	0	1	0	20	1	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	3	10	AP003900.6	1122	chr21:11169841:+	AC011718.2	11864	chr22:20653813:-	ONLY_REF_SPLICE	YES	3	1	0.81	0.93	0.0268	0.0894	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.93	0.1162	TRUE	0	3	0	38	3	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	4	5	CTD-2008L17.1	3828	chr18:53685010:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	10	0	0.47	1	0.0358	0.0447	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.0805	FALSE	1	24	0	14	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR4--KCNJ6	5	1	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	10	0	0.38	1	0.0447	0.0089	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.0536	FALSE	0	24	0	27	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	5	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0447	0.0089	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0536	FALSE	16	356	14	466	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGJ--SRP9	5	0	IGJ	5243	chr4:71527894:-	SRP9	11186	chr1:225965637:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	IGJ->chr4:71521258-71547534:-,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--RPLP1	3	8	IGL@	46516	chr22:23101426:+	RPLP1	74791	chr15:69745174:+	INCL_NON_REF_SPLICE	YES	5723	0	0	1	0.0268	0.0715	IGL@->Oncogene{Bushman},RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0983	FALSE	0	0	0	1	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0447	FALSE	499	1288	110	792	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	5	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0447	FALSE	369	2501	205	193	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYEOV--KIAA0125	4	3	MYEOV	1439	chr11:69062043:+	KIAA0125	15560	chr14:106387009:+	ONLY_REF_SPLICE	YES	326	1	0.02	0.88	0.0358	0.0268	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,KIAA0125->KIAA0125,chr14:106383838-106391825:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.88	0.0626	TRUE	0	0	0	1	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0.0268	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0626	FALSE	407	2205	196	549	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGJ--RPS27A	4	1	IGJ	5243	chr4:71527894:-	RPS27A	11985	chr2:55459944:+	INCL_NON_REF_SPLICE	YES	5858	21	0	0.19	0.0358	0.0089	GTEx&tcga_normals:1/3694=0.03%,IGJ->chr4:71521258-71547534:-,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.19	0.0447	FALSE	0	0	0	1	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITM2C--MT-CO1	4	1	ITM2C	5714	chr2:231741622:+	MT-CO1	11698	chrM:6546:+	INCL_NON_REF_SPLICE	YES	4439	13074	0	0	0.0358	0.0089	ITM2C->chr2:231729354-231743963:+,integral_membrane_protein_2C,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0447	FALSE	0	0	0	6	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4584	chrM:14684:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0358	FALSE	499	1288	110	792	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	4	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0268	0.0358	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.0626	FALSE	499	1288	110	792	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0358	FALSE	499	1288	110	792	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0358	FALSE	369	2501	205	193	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0358	FALSE	369	2501	205	193	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--NPM1	4	0	TXNDC5	2343	chr6:7910752:-	NPM1	18924	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0358	TRUE	0	0	0	5	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	3	2	JSRP1	1230	chr19:2269529:-	RPS28	10778	chr19:8386413:+	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0268	0.0179	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.0447	TRUE	0	1	0	84	1	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	3	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0268	0.0179	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0447	TRUE	477	1352	189	275	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRF1--RPL9	3	1	BRF1	17225	chr14:105752633:-	RPL9	44633	chr4:39460060:-	ONLY_REF_SPLICE	YES	27	289	0.13	0.01	0.0268	0.0089	BRF1->BRF1,_RNA_polymerase_III_transcription_initiation_factor_90_kDa_subunit,chr14:105675623-105781926:-,RPL9->chr4:39455744-39460568:-,ribosomal_protein_L9	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.13	0.0357	FALSE	0	0	0	1	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	3	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9247	chr18:53717398:+	INCL_NON_REF_SPLICE	YES	4	1	0.5	0.8	0.0268	0.0089	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.8	0.0357	FALSE	20	187	4	79	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--RPLP1	3	0	IGL@	36403	chr22:23040632:+	RPLP1	74791	chr15:69745174:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	IGL@->Oncogene{Bushman},RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LILRB1--RPL39	3	0	LILRB1	7726	chr19:55146161:+	RPL39	13559	chrX:118925592:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	LILRB1->chr19:55085346-55148979:+,leukocyte_immunoglobulin_like_receptor_B1,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0268	FALSE	499	1288	110	792	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM2--IVD	3	0	TRIM2	9750	chr4:154197282:+	IVD	36890	chr15:40707600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	TRIM2->chr4:154073494-154260472:+,tripartite_motif_containing_2,IVD->chr15:40697686-40728146:+,isovaleryl-CoA_dehydrogenase	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM2--BAHD1	2	3	TRIM2	9750	chr4:154197282:+	BAHD1	31427	chr15:40750650:+	ONLY_REF_SPLICE	YES	16	29	0.24	0.15	0.0179	0.0268	TRIM2->chr4:154073494-154260472:+,tripartite_motif_containing_2,BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.24	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLIP1--RILPL2	2	1	CLIP1	8073	chr12:122848530:-	RILPL2	45673	chr12:123907704:-	ONLY_REF_SPLICE	YES	42	58	0.07	0.05	0.0179	0.0089	{Klijn_CCL:Lymphoid=1},CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-,RILPL2->Rab_interacting_lysosomal_protein_like_2,chr12:123899936-123921264:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.07	0.0268	TRUE	0	0	0	1	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMTM8--CMTM7	2	1	CMTM8	3732	chr3:32409480:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	51	141	0.06	0.02	0.0179	0.0089	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.06	0.0268	FALSE	3	14	0	5	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-476K15.1--CTD-2015H3.2	2	1	RP11-476K15.1	1041	chr18:1509224:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0179	0.0089	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0268	FALSE	0	0	0	5	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001601.2--AP001605.4	2	0	AP001601.2	2234	chr21:28282349:+	AP001605.4	11109	chr21:28767900:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	AP001601.2->chr21:28261695-28312061:+,AP001605.4->chr21:28733483-28768106:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARFGEF2--MTA1	2	0	ARFGEF2	14953	chr20:47592736:+	MTA1	51922	chr14:105924607:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,MTA1->Oncogene{Bushman},chr14:105886159-105937066:+,metastasis_associated_1	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP6V1G1--ATRX	2	0	ATP6V1G1	1175	chr9:117350200:+	ATRX	31315	chrX:76876000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	ATP6V1G1->ATPase_H+_transporting_V1_subunit_G1,chr9:117350026-117360653:+,ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BFAR--PARN	2	0	BFAR	1204	chr16:14726875:+	PARN	39511	chr16:14649566:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:+:-:[87],BFAR->bifunctional_apoptosis_regulator,chr16:14726672-14763093:+,PARN->chr16:14529558-14726585:-,poly(A)-specific_ribonuclease	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C21orf91--AL109763.2	2	0	C21orf91	2195	chr21:19190509:-	AL109763.2	18650	chr21:20110343:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	C21orf91->chr21:19161284-19191703:-,chromosome_21_open_reading_frame_91,AL109763.2->chr21:19933583-20132321:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	347	1186	183	220	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--DAP3	2	0	PROSC	2996	chr8:37623873:+	DAP3	27888	chr1:155708400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	GTEx_FI:{Muscle=[count:1=pct:0.4],Vagina=[count:1=pct:1.8]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Vagina=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),DAP3->chr1:155657751-155708801:+,death_associated_protein_3	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	2	0	0	4	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--UBE2D2	2	0	RCC1	2175	chr1:28834672:+	UBE2D2	22302	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	20	0	3	11	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-114H21.2--CTB-1I21.1	1	4	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	5	0	0.5	1	0.0089	0.0358	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0447	TRUE	0	2	0	12	2	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	2	0	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	FALSE	141	264	50	91	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1L12.3--SLC5A12	2	0	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	14042	chr11:26737901:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	4	0	4	3	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-319G9.5--WWOX	2	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	FALSE	154	425	28	76	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SGCE--TRAP1	2	0	SGCE	12189	chr7:94228087:-	TRAP1	31974	chr16:3724495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	SGCE->chr7:94214542-94285521:-,sarcoglycan_epsilon,TRAP1->Oncogene{Bushman},TNF_receptor_associated_protein_1,chr16:3701640-3767598:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG5--CEP128	2	0	SNHG5	1780	chr6:86387672:-	CEP128	36683	chr14:81209611:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,CEP128->centrosomal_protein_128,chr14:80943330-81425861:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM2--IVD	2	0	TRIM2	9750	chr4:154197282:+	IVD	36378	chr15:40707088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	TRIM2->chr4:154073494-154260472:+,tripartite_motif_containing_2,IVD->chr15:40697686-40728146:+,isovaleryl-CoA_dehydrogenase	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.31	1	0.0089	0.0268	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	1	0.0357	FALSE	164	806	69	479	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLIP1--RILPL2	1	2	CLIP1	8073	chr12:122848530:-	RILPL2	44521	chr12:123915206:-	ONLY_REF_SPLICE	YES	42	44	0.07	0.06	0.0089	0.0179	{Klijn_CCL:Lymphoid=1},CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-,RILPL2->Rab_interacting_lysosomal_protein_like_2,chr12:123899936-123921264:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.07	0.0268	TRUE	0	0	0	1	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOCAD--RP11-399D6.2	1	2	FOCAD	21068	chr9:20862711:+	RP11-399D6.2	67540	chr9:22723308:+	ONLY_REF_SPLICE	YES	51	1	0.06	0.75	0.0089	0.0179	FOCAD->chr9:20658308-20995954:+,focadhesin,RP11-399D6.2->chr9:22646199-22824212:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.75	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOCAD--RP11-399D6.2	1	2	FOCAD	23993	chr9:20867011:+	RP11-399D6.2	68662	chr9:22820737:+	ONLY_REF_SPLICE	YES	57	3	0.05	0.5	0.0089	0.0179	FOCAD->chr9:20658308-20995954:+,focadhesin,RP11-399D6.2->chr9:22646199-22824212:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.5	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	1	1	0.75	0.0089	0.0179	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0268	TRUE	274	363	69	150	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	1	1	0.75	0.0089	0.0179	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0268	TRUE	160	277	29	98	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP13-188A5.1--KLF8	1	2	RP13-188A5.1	1678	chrX:55935233:+	KLF8	6745	chrX:56259591:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0089	0.0179	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.0268	TRUE	3	12	3	6	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	1	1	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0089	0.0089	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0178	TRUE	0	11	0	26	8	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	21	141	0.09	0.01	0.0089	0.0089	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.09	0.0178	FALSE	118	557	29	88	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-476K15.1--CTD-2015H3.2	1	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0089	0.0089	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0178	FALSE	0	46	0	73	0	FALSE	ACH-000745
MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-476K15.1--CTD-2015H3.2	1	1	RP11-476K15.1	3243	chr18:1626368:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0089	0.0089	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0178	FALSE	0	1	0	4	0	FALSE	ACH-000745
TTC549_SOFT_TISSUE	ESRRA--RP11-783K16.10	82	62	ESRRA	2933	chr11:64074976:+	RP11-783K16.10	17255	chr11:64070954:+	ONLY_REF_SPLICE	YES	31	1	0.82	0.99	1.4737	1.1143	LOCAL_REARRANGEMENT:+:[803],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,RP11-783K16.10->chr11:64059194-64072241:+	TTC549_SOFT_TISSUE	0.82	0.99	2.588	TRUE	0	1	0	1	1	TRUE	ACH-001211
TTC549_SOFT_TISSUE	TIMM23B--LINC00843	82	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4737	0.6111	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TTC549_SOFT_TISSUE	1	1	2.0848	TRUE	508	994	45	981	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-TA--MT-TN	53	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9525	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC549_SOFT_TISSUE	1	1	0.9525	FALSE	369	2501	205	193	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	TIMM23--RP11-464F9.1	52	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	254	6	0.18	0.9	0.9346	0.0719	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TTC549_SOFT_TISSUE	0.18	0.9	1.0065	TRUE	519	3926	326	965	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	ZNF654--HMGB2	38	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6829	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TTC549_SOFT_TISSUE	1	1	0.6829	TRUE	0	0	0	518	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	VPS35--MYLK3	28	1	VPS35	1388	chr16:46723043:-	MYLK3	39319	chr16:46746688:-	ONLY_REF_SPLICE	YES	6	1	0.83	0.97	0.5032	0.018	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[17461],VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-,MYLK3->chr16:46740891-46824319:-,myosin_light_chain_kinase_3	TTC549_SOFT_TISSUE	0.83	0.97	0.5212	TRUE	0	0	0	1	0	TRUE	ACH-001211
TTC549_SOFT_TISSUE	ESRRA--RP11-783K16.10	19	36	ESRRA	2933	chr11:64074976:+	RP11-783K16.10	17546	chr11:64071245:+	ONLY_REF_SPLICE	YES	31	1	0.64	0.98	0.3415	0.647	LOCAL_REARRANGEMENT:+:[803],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,RP11-783K16.10->chr11:64059194-64072241:+	TTC549_SOFT_TISSUE	0.64	0.98	0.9885	TRUE	0	1	0	1	1	TRUE	ACH-001211
TTC549_SOFT_TISSUE	MT-TA--MT-TN	20	31	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3594	0.5571	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC549_SOFT_TISSUE	1	1	0.9165	FALSE	369	2501	205	193	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-TA--MT-TN	20	13	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3594	0.2336	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC549_SOFT_TISSUE	1	1	0.593	FALSE	369	2501	205	193	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-ND6--MT-TE	22	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3954	0.0539	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC549_SOFT_TISSUE	1	1	0.4493	FALSE	499	1288	110	792	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-TA--MT-TC	21	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3774	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TTC549_SOFT_TISSUE	1	1	0.3774	FALSE	462	80	0	856	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-TA--MT-TN	15	22	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2696	0.3954	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC549_SOFT_TISSUE	1	1	0.665	FALSE	369	2501	205	193	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	ESRRA--RP11-783K16.10	3	61	ESRRA	2933	chr11:64074976:+	RP11-783K16.10	17260	chr11:64070959:+	INCL_NON_REF_SPLICE	YES	31	0	0.67	1	0.0539	1.0963	LOCAL_REARRANGEMENT:+:[803],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,RP11-783K16.10->chr11:64059194-64072241:+	TTC549_SOFT_TISSUE	0.67	1	1.1502	TRUE	0	1	0	1	1	TRUE	ACH-001211
TTC549_SOFT_TISSUE	MT-ND6--MT-TE	16	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2876	0.0539	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC549_SOFT_TISSUE	1	1	0.3415	FALSE	499	1288	110	792	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-TA--MT-TN	13	15	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2336	0.2696	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC549_SOFT_TISSUE	1	1	0.5032	FALSE	369	2501	205	193	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-ND6--MT-TE	13	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.2336	0.1618	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC549_SOFT_TISSUE	0.92	1	0.3954	FALSE	499	1288	110	792	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-TA--MT-TN	4	45	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0719	0.8088	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC549_SOFT_TISSUE	1	1	0.8807	FALSE	369	2501	205	193	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	RERE--VMP1	12	9	RERE	6711	chr1:8716032:-	VMP1	44154	chr17:57808782:+	ONLY_REF_SPLICE	YES	231	72	0.08	0.23	0.2157	0.1618	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TTC549_SOFT_TISSUE	0.08	0.23	0.3775	TRUE	0	0	0	1	0	TRUE	ACH-001211
TTC549_SOFT_TISSUE	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2336	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TTC549_SOFT_TISSUE	1	1	0.2336	TRUE	0	0	0	434	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	RP11-680G10.1--GSE1	11	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.66	0.1977	0.1438	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TTC549_SOFT_TISSUE	0.66	1	0.3415	TRUE	458	1351	185	561	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-TA--MT-TN	6	26	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1078	0.4673	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC549_SOFT_TISSUE	1	1	0.5751	FALSE	369	2501	205	193	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	SPTAN1--GLE1	10	5	SPTAN1	2990	chr9:131329256:+	GLE1	57746	chr9:131296040:+	ONLY_REF_SPLICE	YES	112	54	0.12	0.22	0.1797	0.0899	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[10299],SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	TTC549_SOFT_TISSUE	0.12	0.22	0.2696	TRUE	0	0	0	2	0	TRUE	ACH-001211
TTC549_SOFT_TISSUE	RP11-123O10.4--GRIP1	10	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1797	0.0359	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TTC549_SOFT_TISSUE	1	1	0.2156	FALSE	416	2512	207	587	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	C15orf57--CBX3	9	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	51	22	0.22	0.39	0.1618	0.0899	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TTC549_SOFT_TISSUE	0.22	0.39	0.2517	TRUE	267	562	48	632	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-ND6--MT-TE	9	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1618	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC549_SOFT_TISSUE	1	1	0.1618	FALSE	499	1288	110	792	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-TA--MT-TN	3	20	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0.3594	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC549_SOFT_TISSUE	1	1	0.4133	FALSE	369	2501	205	193	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	RP11-680G10.1--GSE1	7	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	31	1	0.26	0.1258	0.0719	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TTC549_SOFT_TISSUE	0.26	1	0.1977	TRUE	465	1949	224	605	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-ND6--MT-TE	4	15	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0719	0.2696	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC549_SOFT_TISSUE	0.9	1	0.3415	FALSE	499	1288	110	792	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-TA--MT-TC	7	0	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1258	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TTC549_SOFT_TISSUE	1	1	0.1258	FALSE	462	80	0	856	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-ND6--MT-TE	3	15	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0539	0.2696	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC549_SOFT_TISSUE	0.9	1	0.3235	FALSE	499	1288	110	792	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-TA--MT-TN	6	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1078	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC549_SOFT_TISSUE	1	1	0.1078	FALSE	369	2501	205	193	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	ANKS1A--UHRF1BP1	5	2	ANKS1A	9720	chr6:34962199:+	UHRF1BP1	31297	chr6:34789430:+	ONLY_REF_SPLICE	YES	28	21	0.2	0.25	0.0899	0.0359	LOCAL_REARRANGEMENT:+:[6127],ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+,UHRF1BP1->UHRF1_binding_protein_1,chr6:34759857-34850915:+	TTC549_SOFT_TISSUE	0.2	0.25	0.1258	TRUE	0	0	0	1	0	TRUE	ACH-001211
TTC549_SOFT_TISSUE	MT-ND1--IGF2	4	0	MT-ND1	1285	chrM:3591:+	IGF2	15479	chr11:2153316:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0	MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	TTC549_SOFT_TISSUE	1	1	0.0719	FALSE	0	0	0	2	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC549_SOFT_TISSUE	1	1	0.0719	FALSE	369	2501	205	193	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC549_SOFT_TISSUE	1	1	0.0719	FALSE	369	2501	205	193	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	NUP188--RP1-102D24.5	4	0	NUP188	21705	chr9:131752505:+	RP1-102D24.5	38569	chr22:45831915:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0719	0	NUP188->chr9:131709978-131769375:+,nucleoporin_188kDa,RP1-102D24.5->chr22:45831744-45844624:-	TTC549_SOFT_TISSUE	1	1	0.0719	TRUE	0	0	0	1	0	TRUE	ACH-001211
TTC549_SOFT_TISSUE	GTDC1--ARHGAP15	3	1	GTDC1	16823	chr2:144899449:-	ARHGAP15	70348	chr2:144525558:+	ONLY_REF_SPLICE	YES	37	44	0.1	0.08	0.0539	0.018	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.03%,GTEx_FI:{Nerve=[count:4=pct:2.4],Blood=[count:4=pct:2.3],Heart=[count:1=pct:0.4],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=27;pct=0.31%;dist=Nerve_-_Tibial=7,Whole_Blood=5,Lung=3,Artery_-_Aorta=3,Heart_-_Left_Ventricle=2,Spleen=2,Artery_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Atrial_Appendage=1},GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	TTC549_SOFT_TISSUE	0.08	0.1	0.0719	TRUE	1	0	0	1	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-ND1--IGF2	3	0	MT-ND1	1260	chrM:3566:+	IGF2	15450	chr11:2153345:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0	MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	TTC549_SOFT_TISSUE	1	1	0.0539	FALSE	0	0	0	2	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1031	chrM:14643:-	MT-TE	4590	chrM:14678:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC549_SOFT_TISSUE	1	1	0.0539	FALSE	499	1288	110	792	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TTC549_SOFT_TISSUE	1	1	0.0539	FALSE	462	80	0	856	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TTC549_SOFT_TISSUE	1	1	0.0539	FALSE	462	80	0	856	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	MT-TA--MT-TN	3	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC549_SOFT_TISSUE	1	1	0.0539	FALSE	369	2501	205	193	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	RP11-275N1.1--NEBL	3	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0539	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	TTC549_SOFT_TISSUE	1	1	0.0539	TRUE	0	0	0	21	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0.018	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TTC549_SOFT_TISSUE	1	1	0.0539	FALSE	93	270	15	244	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	CKAP5--CELF1	2	0	CKAP5	3263	chr11:46842726:-	CELF1	56241	chr11:47510576:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0	CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5,CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-	TTC549_SOFT_TISSUE	1	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-001211
TTC549_SOFT_TISSUE	LINC01014--KCNMB2	2	0	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	TTC549_SOFT_TISSUE	1	1	0.0359	FALSE	12	33	18	33	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	LINC01014--KCNMB2	2	0	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	TTC549_SOFT_TISSUE	1	1	0.0359	FALSE	11	60	26	37	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	YPEL2--VMP1	2	0	YPEL2	1136	chr17:57409185:+	VMP1	20364	chr17:57808782:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0	YPEL2->chr17:57409050-57479090:+,yippee_like_2,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TTC549_SOFT_TISSUE	1	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-001211
TTC549_SOFT_TISSUE	ATF2--CHN1	1	2	ATF2	17534	chr2:175945388:-	CHN1	26246	chr2:175816930:-	ONLY_REF_SPLICE	NO	94	14	0.03	0.18	0.018	0.0359	NEIGHBORS[66881],ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-,CHN1->Oncogene{Bushman},chimerin_1,chr2:175664091-175870097:-	TTC549_SOFT_TISSUE	0.03	0.18	0.0539	FALSE	0	0	0	7	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	CTDSP1--DNM3OS	1	2	CTDSP1	5150	chr2:219267128:+	DNM3OS	12044	chr1:172113577:-	ONLY_REF_SPLICE	YES	124	126	0.02	0.02	0.018	0.0359	GTEx_FI:{Blood_Vessel=[count:34=pct:9.2],Ovary=[count:11=pct:20.8],Colon=[count:9=pct:4.7],Esophagus=[count:5=pct:1.2],Adipose_Tissue=[count:4=pct:1.3],Breast=[count:4=pct:3.6],Thyroid=[count:4=pct:2.3],Spleen=[count:3=pct:2.7],Lung=[count:3=pct:1.8],Vagina=[count:2=pct:3.6],Uterus=[count:2=pct:4.7],Skin=[count:2=pct:0.6],Prostate=[count:2=pct:3.3],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Testis=[count:1=pct:1.0]},CTDSP1->CTD_small_phosphatase_1,chr2:219262979-219270664:+,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	TTC549_SOFT_TISSUE	0.02	0.02	0.0539	TRUE	71	70	15	9	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	ESRRA--RP11-783K16.10	1	1	ESRRA	1877	chr11:64073920:+	RP11-783K16.10	17255	chr11:64070954:+	ONLY_REF_SPLICE	YES	22	1	0.08	0.67	0.018	0.018	LOCAL_REARRANGEMENT:+:[803],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,RP11-783K16.10->chr11:64059194-64072241:+	TTC549_SOFT_TISSUE	0.08	0.67	0.036	TRUE	0	1	0	1	1	TRUE	ACH-001211
TTC549_SOFT_TISSUE	HNRNPU--CCT3	1	1	HNRNPU	7532	chr1:245021313:-	CCT3	25181	chr1:156294880:-	ONLY_REF_SPLICE	YES	1619	1943	0	0	0.018	0.018	HNRNPU->chr1:245014468-245027844:-,heterogeneous_nuclear_ribonucleoprotein_U_(scaffold_attachment_factor_A),CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	TTC549_SOFT_TISSUE	0	0	0.036	FALSE	0	0	0	1	0	FALSE	ACH-001211
TTC549_SOFT_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	41	0.5	0.05	0.018	0.018	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	TTC549_SOFT_TISSUE	0.05	0.5	0.036	FALSE	16	356	14	466	0	FALSE	ACH-001211
NUGC4_STOMACH	KPNA2--DHX40	1160	191	KPNA2	1322	chr17:66031956:+	DHX40	26577	chr17:57679883:+	ONLY_REF_SPLICE	YES	59	201	0.96	0.87	16.6361	2.7392	KPNA2->chr17:66031635-66042958:+,karyopherin_subunit_alpha_2,DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+	NUGC4_STOMACH	0.87	0.96	19.3753	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	ARHGAP27--JMJD6	221	15	ARHGAP27	6815	chr17:43502930:-	JMJD6	27913	chr17:74718015:-	ONLY_REF_SPLICE	YES	10	96	0.96	0.71	3.1695	0.2151	ARHGAP27->Rho_GTPase_activating_protein_27,chr17:43471275-43511787:-,JMJD6->arginine_demethylase_and_lysine_hydroxylase,chr17:74708919-74722866:-	NUGC4_STOMACH	0.71	0.96	3.3846	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	AC104389.28--HBE1	82	125	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	127	0	0.62	1	1.176	1.7927	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NUGC4_STOMACH	0.62	1	2.9687	TRUE	0	48	0	65	48	FALSE	ACH-000674
NUGC4_STOMACH	EME1--KCNJ2	71	66	EME1	3067	chr17:48453554:+	KCNJ2	11986	chr17:68170965:+	ONLY_REF_SPLICE	YES	23	6	0.86	0.96	1.0182	0.9465	EME1->chr17:48450581-48458844:+,essential_meiotic_structure-specific_endonuclease_1,KCNJ2->chr17:68164814-68176189:+,potassium_voltage-gated_channel_subfamily_J_member_2	NUGC4_STOMACH	0.86	0.96	1.9647	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	UNK--FAM104A	66	85	UNK	1385	chr17:73781065:+	FAM104A	25342	chr17:71223403:-	ONLY_REF_SPLICE	YES	143	286	0.51	0.35	0.9465	1.219	{Klijn_CCL:Stomach=1},UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,FAM104A->chr17:71203492-71232892:-,family_with_sequence_similarity_104_member_A	NUGC4_STOMACH	0.35	0.51	2.1655	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	WSB1--HDAC5	68	66	WSB1	1360	chr17:25621461:+	HDAC5	18563	chr17:42195072:-	ONLY_REF_SPLICE	YES	245	12	0.35	0.92	0.9752	0.9465	{Klijn_CCL:Stomach=1},WSB1->WD_repeat_and_SOCS_box_containing_1,chr17:25621102-25640657:+,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	NUGC4_STOMACH	0.35	0.92	1.9217	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	TIMM23B--LINC00843	62	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8892	0.3872	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NUGC4_STOMACH	0.99	1	1.2764	TRUE	508	994	45	981	0	FALSE	ACH-000674
NUGC4_STOMACH	SLC9A3R1--TMEM105	45	94	SLC9A3R1	2807	chr17:72758312:+	TMEM105	15595	chr17:79287719:-	ONLY_REF_SPLICE	YES	652	9	0.18	0.94	0.6454	1.3481	SLC9A3R1->Oncogene{Bushman},SLC9A3_regulator_1,chr17:72744791-72765492:+,TMEM105->chr17:79285074-79304474:-,transmembrane_protein_105	NUGC4_STOMACH	0.18	0.94	1.9935	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	KPNA2--DHX40	13	208	KPNA2	1539	chr17:66032173:+	DHX40	26568	chr17:57679874:+	INCL_NON_REF_SPLICE	YES	190	212	0.54	0.51	0.1864	2.983	KPNA2->chr17:66031635-66042958:+,karyopherin_subunit_alpha_2,DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+	NUGC4_STOMACH	0.51	0.54	3.1694	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	AC104389.28--HBE1	22	131	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	127	0	0.55	1	0.3155	1.8787	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NUGC4_STOMACH	0.55	1	2.1942	TRUE	0	35	0	55	35	FALSE	ACH-000674
NUGC4_STOMACH	MT-TA--MT-TC	44	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.631	0.1004	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUGC4_STOMACH	1	1	0.7314	FALSE	462	80	0	856	0	FALSE	ACH-000674
NUGC4_STOMACH	CACTIN--ZFR2	38	25	CACTIN	10198	chr19:3613342:-	ZFR2	39888	chr19:3805049:-	INCL_NON_REF_SPLICE	YES	14	0	0.82	1	0.545	0.3585	CACTIN->cactin,_spliceosome_C_complex_subunit,chr19:3610639-3626813:-,ZFR2->chr19:3804022-3869030:-,zinc_finger_RNA_binding_protein_2	NUGC4_STOMACH	0.82	1	0.9035	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	SLC9A3R1--TMEM105	19	99	SLC9A3R1	2807	chr17:72758312:+	TMEM105	15529	chr17:79287785:-	ONLY_REF_SPLICE	YES	652	0	0.15	1	0.2725	1.4198	SLC9A3R1->Oncogene{Bushman},SLC9A3_regulator_1,chr17:72744791-72765492:+,TMEM105->chr17:79285074-79304474:-,transmembrane_protein_105	NUGC4_STOMACH	0.15	1	1.6923	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	ACACA--ERC1	37	23	ACACA	13908	chr17:35687113:-	ERC1	112117	chr12:1553728:+	ONLY_REF_SPLICE	YES	156	28	0.28	0.68	0.5306	0.3299	ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	NUGC4_STOMACH	0.28	0.68	0.8605	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	CFTR--MET	27	39	CFTR	23534	chr7:117243836:+	MET	47781	chr7:116339125:+	ONLY_REF_SPLICE	YES	819	991	0.07	0.06	0.3872	0.5593	{Klijn_CCL:Stomach=1},CFTR->chr7:117105838-117356025:+,cystic_fibrosis_transmembrane_conductance_regulator,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	NUGC4_STOMACH	0.06	0.07	0.9465	TRUE	0	0	0	1	0	FALSE	ACH-000674
NUGC4_STOMACH	TIMM23--RP11-464F9.1	32	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	224	7	0.14	0.84	0.4589	0.0717	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NUGC4_STOMACH	0.14	0.84	0.5306	TRUE	519	3926	326	965	0	FALSE	ACH-000674
NUGC4_STOMACH	NSF--PLEKHM1	28	12	NSF	15332	chr17:44782220:+	PLEKHM1	39623	chr17:43535805:-	ONLY_REF_SPLICE	YES	152	49	0.21	0.45	0.4016	0.1721	NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,PLEKHM1->chr17:43513266-43568115:-,pleckstrin_homology_and_RUN_domain_containing_M1	NUGC4_STOMACH	0.21	0.45	0.5737	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	UNK--FAM104A	3	91	UNK	3104	chr17:73788559:+	FAM104A	25342	chr17:71223403:-	ONLY_REF_SPLICE	YES	131	286	0.42	0.25	0.043	1.3051	{Klijn_CCL:Stomach=1},UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,FAM104A->chr17:71203492-71232892:-,family_with_sequence_similarity_104_member_A	NUGC4_STOMACH	0.25	0.42	1.3481	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	SLC25A26--C3orf83	23	8	SLC25A26	2761	chr3:66271553:+	C3orf83	32956	chr3:12556515:-	ONLY_REF_SPLICE	YES	28	0	0.53	1	0.3299	0.1147	SLC25A26->chr3:66119285-66438540:+,solute_carrier_family_25_member_26,C3orf83->chr3:12556433-12602558:-	NUGC4_STOMACH	0.53	1	0.4446	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	UNK--FAM104A	1	88	UNK	2645	chr17:73788100:+	FAM104A	25342	chr17:71223403:-	ONLY_REF_SPLICE	YES	149	286	0.37	0.24	0.0143	1.262	{Klijn_CCL:Stomach=1},UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,FAM104A->chr17:71203492-71232892:-,family_with_sequence_similarity_104_member_A	NUGC4_STOMACH	0.24	0.37	1.2763	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ND4L	4	72	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	80	0	0.49	1	0.0574	1.0326	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC4_STOMACH	0.49	1	1.09	FALSE	344	827	44	306	0	FALSE	ACH-000674
NUGC4_STOMACH	MTUS1--FGL1	17	18	MTUS1	16444	chr8:17570723:-	FGL1	44552	chr8:17749316:-	ONLY_REF_SPLICE	YES	317	115	0.1	0.23	0.2438	0.2581	YOSHIHARA_TCGA_num_samples[LUAD:2],LOCAL_REARRANGEMENT:-:[63463],MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1,FGL1->chr8:17721889-17767874:-,fibrinogen_like_1	NUGC4_STOMACH	0.1	0.23	0.5019	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ND4L	3	73	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	1354	0	0.05	1	0.043	1.0469	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC4_STOMACH	0.05	1	1.0899	FALSE	344	827	44	306	0	FALSE	ACH-000674
NUGC4_STOMACH	ARHGDIA--EME1	21	0	ARHGDIA	1109	chr17:79829174:-	EME1	8745	chr17:48452546:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3012	0	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,EME1->chr17:48450581-48458844:+,essential_meiotic_structure-specific_endonuclease_1	NUGC4_STOMACH	1	1	0.3012	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ND4L	3	72	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	1479	0	0.05	1	0.043	1.0326	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC4_STOMACH	0.05	1	1.0756	FALSE	344	827	44	306	0	FALSE	ACH-000674
NUGC4_STOMACH	UNK--FAM104A	9	48	UNK	1385	chr17:73781065:+	FAM104A	27505	chr17:71205907:-	ONLY_REF_SPLICE	YES	143	264	0.28	0.18	0.1291	0.6884	{Klijn_CCL:Stomach=1},UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,FAM104A->chr17:71203492-71232892:-,family_with_sequence_similarity_104_member_A	NUGC4_STOMACH	0.18	0.28	0.8175	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	HGS--CCDC57	15	18	HGS	11777	chr17:79662253:+	CCDC57	24120	chr17:80159828:-	ONLY_REF_SPLICE	YES	185	22	0.15	0.6	0.2151	0.2581	HGS->chr17:79650356-79670168:+,hepatocyte_growth_factor-regulated_tyrosine_kinase_substrate,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	NUGC4_STOMACH	0.15	0.6	0.4732	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	METTL23--SPHK1	13	21	METTL23	2633	chr17:74725876:+	SPHK1	8024	chr17:74372774:+	INCL_NON_REF_SPLICE	YES	197	0	0.15	1	0.1864	0.3012	METTL23->chr17:74722912-74730018:+,methyltransferase_like_23,SPHK1->chr17:74372665-74383941:+,sphingosine_kinase_1	NUGC4_STOMACH	0.15	1	0.4876	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	HGS--CCDC57	10	29	HGS	11777	chr17:79662253:+	CCDC57	22634	chr17:80165924:-	ONLY_REF_SPLICE	YES	185	0	0.17	1	0.1434	0.4159	HGS->chr17:79650356-79670168:+,hepatocyte_growth_factor-regulated_tyrosine_kinase_substrate,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	NUGC4_STOMACH	0.17	1	0.5593	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	KIAA1522--LRRN2	16	5	KIAA1522	1305	chr1:33207790:+	LRRN2	20478	chr1:204589346:-	ONLY_REF_SPLICE	YES	37	2	0.36	0.91	0.2295	0.0717	KIAA1522->KIAA1522,chr1:33207486-33240571:+,LRRN2->chr1:204586298-204654861:-,leucine_rich_repeat_neuronal_2	NUGC4_STOMACH	0.36	0.91	0.3012	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	WSB1--HDAC5	11	25	WSB1	1360	chr17:25621461:+	HDAC5	20312	chr17:42188171:-	ONLY_REF_SPLICE	YES	245	40	0.13	0.47	0.1578	0.3585	{Klijn_CCL:Stomach=1},WSB1->WD_repeat_and_SOCS_box_containing_1,chr17:25621102-25640657:+,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	NUGC4_STOMACH	0.13	0.47	0.5163	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ND4L	5	47	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	211	0	0.2	1	0.0717	0.674	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC4_STOMACH	0.2	1	0.7457	FALSE	344	827	44	306	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ATP6--MT-CO1	14	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	12516	34855	0	0	0.2008	0.0287	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NUGC4_STOMACH	0	0	0.2295	FALSE	183	104	9	328	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ND4L	10	18	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	14293	0	0	1	0.1434	0.2581	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC4_STOMACH	0	1	0.4015	FALSE	328	800	43	304	0	FALSE	ACH-000674
NUGC4_STOMACH	MTUS1--FGL1	11	14	MTUS1	16444	chr8:17570723:-	FGL1	46302	chr8:17743080:-	ONLY_REF_SPLICE	YES	317	746	0.07	0.03	0.1578	0.2008	YOSHIHARA_TCGA_num_samples[LUAD:2],LOCAL_REARRANGEMENT:-:[63463],MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1,FGL1->chr8:17721889-17767874:-,fibrinogen_like_1	NUGC4_STOMACH	0.03	0.07	0.3586	TRUE	0	2	0	1	1	FALSE	ACH-000674
NUGC4_STOMACH	C15orf57--CBX3	10	17	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	128	70	0.17	0.28	0.1434	0.2438	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NUGC4_STOMACH	0.17	0.28	0.3872	TRUE	267	562	48	632	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ND4L	3	45	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	12	0	0.8	1	0.043	0.6454	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC4_STOMACH	0.8	1	0.6884	FALSE	344	821	44	306	0	FALSE	ACH-000674
NUGC4_STOMACH	ADAMTS9--TSEN2	12	8	ADAMTS9	27325	chr3:64579934:-	TSEN2	60403	chr3:12580660:+	ONLY_REF_SPLICE	YES	12	17	0.62	0.54	0.1721	0.1147	ADAMTS9->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_9,chr3:64501333-64673676:-,TSEN2->chr3:12525931-12581122:+,tRNA_splicing_endonuclease_subunit_2	NUGC4_STOMACH	0.54	0.62	0.2868	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	PLEKHA6--KIAA1522	12	7	PLEKHA6	2160	chr1:204340658:-	KIAA1522	36864	chr1:33233388:+	ONLY_REF_SPLICE	YES	34	142	0.36	0.12	0.1721	0.1004	PLEKHA6->chr1:204187979-204346793:-,pleckstrin_homology_domain_containing_A6,KIAA1522->KIAA1522,chr1:33207486-33240571:+	NUGC4_STOMACH	0.12	0.36	0.2725	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	MT-TA--MT-TC	11	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1578	0.1004	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUGC4_STOMACH	1	1	0.2582	FALSE	462	80	0	856	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ATP8	12	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1721	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	1	1	0.1721	FALSE	230	193	14	283	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-CO2--MT-CO1	9	10	MT-CO2	1282	chrM:7867:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	35	32223	0.35	0	0.1291	0.1434	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NUGC4_STOMACH	0	0.35	0.2725	FALSE	36	10	0	27	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ATP6--MT-CO1	9	4	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	12769	35914	0	0	0.1291	0.0574	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NUGC4_STOMACH	0	0	0.1865	FALSE	183	104	9	328	0	FALSE	ACH-000674
NUGC4_STOMACH	ARHGDIA--EME1	9	0	ARHGDIA	1109	chr17:79829174:-	EME1	9626	chr17:48453427:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1291	0	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,EME1->chr17:48450581-48458844:+,essential_meiotic_structure-specific_endonuclease_1	NUGC4_STOMACH	1	1	0.1291	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	MT-TA--MT-TC	7	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1004	0.1147	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUGC4_STOMACH	1	1	0.2151	FALSE	462	80	0	856	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ATP8	6	11	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	20438	0	0	1	0.086	0.1578	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	0	1	0.2438	FALSE	231	217	16	283	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ND4L	4	17	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1798	0	0.01	1	0.0574	0.2438	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC4_STOMACH	0.01	1	0.3012	FALSE	344	827	44	306	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ATP8	5	12	MT-ND4	1818	chrM:11577:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	20518	0	0	1	0.0717	0.1721	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	0	1	0.2438	FALSE	231	217	16	283	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ATP8	4	14	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	20060	0	0	1	0.0574	0.2008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	0	1	0.2582	FALSE	231	217	16	283	0	FALSE	ACH-000674
NUGC4_STOMACH	ENDOV--SEPT9	6	5	ENDOV	13940	chr17:78403631:+	SEPT9	26267	chr17:75303223:+	ONLY_REF_SPLICE	YES	88	114	0.11	0.09	0.086	0.0717	ENDOV->chr17:78388965-78411886:+,endonuclease_V,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	NUGC4_STOMACH	0.09	0.11	0.1577	TRUE	0	0	0	1	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ND4L	3	17	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	60	0	0.25	1	0.043	0.2438	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC4_STOMACH	0.25	1	0.2868	FALSE	344	826	44	306	0	FALSE	ACH-000674
NUGC4_STOMACH	C15orf57--CBX3	4	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	127	73	0.11	0.18	0.0574	0.1721	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NUGC4_STOMACH	0.11	0.18	0.2295	TRUE	267	562	48	632	0	FALSE	ACH-000674
NUGC4_STOMACH	FTH1--ACTG1	7	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1004	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NUGC4_STOMACH	1	1	0.1004	TRUE	0	0	0	64	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ATP6--MT-CO1	5	8	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4111	36485	0	0	0.0717	0.1147	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NUGC4_STOMACH	0	0	0.1864	FALSE	183	104	9	328	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ATP8	5	7	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	21558	0	0	1	0.0717	0.1004	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	0	1	0.1721	FALSE	231	217	16	283	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ATP8	4	11	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17720	98	0	0.13	0.0574	0.1578	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	0	0.13	0.2152	FALSE	231	217	16	283	0	FALSE	ACH-000674
NUGC4_STOMACH	SLC25A26--BAP1	6	3	SLC25A26	2761	chr3:66271553:+	BAP1	31888	chr3:52437314:-	ONLY_REF_SPLICE	YES	28	1	0.24	0.9	0.086	0.043	SLC25A26->chr3:66119285-66438540:+,solute_carrier_family_25_member_26,BAP1->ArcherDX_panel,BRCA1_associated_protein_1,FoundationOne_panel,Oncogene{Bushman},chr3:52435029-52444366:-	NUGC4_STOMACH	0.24	0.9	0.129	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	MT-ATP6--MT-CO1	6	2	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12096	35372	0	0	0.086	0.0287	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NUGC4_STOMACH	0	0	0.1147	FALSE	183	104	9	328	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-CO2--MT-CO1	5	6	MT-CO2	1278	chrM:7863:+	MT-CO1	5602	chrM:6821:+	INCL_NON_REF_SPLICE	YES	35	19518	0.24	0	0.0717	0.086	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NUGC4_STOMACH	0	0.24	0.1577	FALSE	36	10	0	27	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ATP8	3	14	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	18820	0	0	1	0.043	0.2008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	0	1	0.2438	FALSE	231	217	16	283	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ATP8	5	6	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	20898	1653	0	0.01	0.0717	0.086	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	0	0.01	0.1577	FALSE	231	217	16	283	0	FALSE	ACH-000674
NUGC4_STOMACH	ARHGAP27--JMJD6	5	5	ARHGAP27	5476	chr17:43506989:-	JMJD6	27913	chr17:74718015:-	ONLY_REF_SPLICE	YES	3	96	0.77	0.09	0.0717	0.0717	ARHGAP27->Rho_GTPase_activating_protein_27,chr17:43471275-43511787:-,JMJD6->arginine_demethylase_and_lysine_hydroxylase,chr17:74708919-74722866:-	NUGC4_STOMACH	0.09	0.77	0.1434	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ATP8	4	9	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	24650	98	0	0.12	0.0574	0.1291	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	0	0.12	0.1865	FALSE	231	217	16	283	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ND4L	4	9	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2061	0	0.01	1	0.0574	0.1291	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC4_STOMACH	0.01	1	0.1865	FALSE	344	827	44	306	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ND4L	4	9	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	79	0	0.14	1	0.0574	0.1291	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC4_STOMACH	0.14	1	0.1865	FALSE	344	826	44	306	0	FALSE	ACH-000674
NUGC4_STOMACH	MDM2--LYZ	6	0	MDM2	14358	chr12:69234186:+	LYZ	26387	chr12:69747397:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.086	0	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,LYZ->chr12:69742121-69748014:+,lysozyme	NUGC4_STOMACH	1	1	0.086	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	RP11-680G10.1--GSE1	5	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	75	1	0.11	0.0717	0.0574	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NUGC4_STOMACH	0.11	1	0.1291	TRUE	465	1949	224	605	0	FALSE	ACH-000674
NUGC4_STOMACH	WSB1--HDAC5	4	8	WSB1	1360	chr17:25621461:+	HDAC5	21387	chr17:42171202:-	ONLY_REF_SPLICE	YES	245	45	0.05	0.21	0.0574	0.1147	{Klijn_CCL:Stomach=1},WSB1->WD_repeat_and_SOCS_box_containing_1,chr17:25621102-25640657:+,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	NUGC4_STOMACH	0.05	0.21	0.1721	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	ALYREF--RP11-60A24.3	5	2	ALYREF	1898	chr17:79848565:-	RP11-60A24.3	10112	chr17:55849557:-	ONLY_REF_SPLICE	YES	370	0	0.02	1	0.0717	0.0287	ALYREF->Aly/REF_export_factor,chr17:79845713-79849462:-,RP11-60A24.3->chr17:55849307-55912110:-	NUGC4_STOMACH	0.02	1	0.1004	TRUE	0	0	0	1	0	FALSE	ACH-000674
NUGC4_STOMACH	BAIAP2--RP11-1055B8.3	3	9	BAIAP2	17834	chr17:79073880:+	RP11-1055B8.3	36886	chr17:79349973:-	ONLY_REF_SPLICE	YES	200	0	0.06	1	0.043	0.1291	BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+,RP11-1055B8.3->chr17:79349801-79359160:-	NUGC4_STOMACH	0.06	1	0.1721	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	HAAO--THADA	4	5	HAAO	3859	chr2:43010924:-	THADA	66004	chr2:43460021:-	ONLY_REF_SPLICE	YES	9	66	0.5	0.12	0.0574	0.0717	HAAO->3-hydroxyanthranilate_3,4-dioxygenase,chr2:42994229-43019733:-,THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-	NUGC4_STOMACH	0.12	0.5	0.1291	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	MT-CO2--MT-CO1	3	9	MT-CO2	1278	chrM:7863:+	MT-CO1	5338	chrM:6557:+	INCL_NON_REF_SPLICE	YES	35	36492	0.26	0	0.043	0.1291	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NUGC4_STOMACH	0	0.26	0.1721	FALSE	36	10	0	27	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-CO3--MT-ATP8	5	1	MT-CO3	1140	chrM:9346:+	MT-ATP8	4859	chrM:8440:+	INCL_NON_REF_SPLICE	YES	6645	0	0	1	0.0717	0.0143	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	0	1	0.086	FALSE	16	100	1	11	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ATP8	3	9	MT-ND4	1503	chrM:11262:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	22127	0	0	1	0.043	0.1291	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	0	1	0.1721	FALSE	231	217	16	283	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ND4L	3	9	MT-ND4	1248	chrM:11007:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	120	0	0.09	1	0.043	0.1291	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC4_STOMACH	0.09	1	0.1721	FALSE	344	827	44	306	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ND4L	3	9	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1182	0	0.01	1	0.043	0.1291	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC4_STOMACH	0.01	1	0.1721	FALSE	344	827	44	306	0	FALSE	ACH-000674
NUGC4_STOMACH	ARHGDIA--EME1	5	0	ARHGDIA	1109	chr17:79829174:-	EME1	7617	chr17:48450511:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0717	0	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,EME1->chr17:48450581-48458844:+,essential_meiotic_structure-specific_endonuclease_1	NUGC4_STOMACH	1	1	0.0717	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	ASPSCR1--ACBD4	4	4	ASPSCR1	18554	chr17:79970159:+	ACBD4	28280	chr17:43212708:+	ONLY_REF_SPLICE	YES	78	2	0.09	0.8	0.0574	0.0574	ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+,ACBD4->acyl-CoA_binding_domain_containing_4,chr17:43209967-43221548:+	NUGC4_STOMACH	0.09	0.8	0.1148	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	MT-CO3--MT-ATP8	5	0	MT-CO3	1124	chrM:9330:+	MT-ATP8	4846	chrM:8427:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0717	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	1	1	0.0717	FALSE	16	100	1	11	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ATP8	3	7	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	21694	0	0	1	0.043	0.1004	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	0	1	0.1434	FALSE	231	217	16	283	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ATP6--MT-CO1	3	6	MT-ATP6	1400	chrM:8926:+	MT-CO1	5381	chrM:6603:+	INCL_NON_REF_SPLICE	YES	14331	36006	0	0	0.043	0.086	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NUGC4_STOMACH	0	0	0.129	FALSE	183	104	9	328	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ATP6--MT-CO1	4	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	12709	31599	0	0	0.0574	0.0287	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NUGC4_STOMACH	0	0	0.0861	FALSE	183	104	9	328	0	FALSE	ACH-000674
NUGC4_STOMACH	CFTR--MET	2	9	CFTR	22615	chr7:117242917:+	MET	47781	chr7:116339125:+	ONLY_REF_SPLICE	YES	630	991	0.02	0.01	0.0287	0.1291	{Klijn_CCL:Stomach=1},CFTR->chr7:117105838-117356025:+,cystic_fibrosis_transmembrane_conductance_regulator,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	NUGC4_STOMACH	0.01	0.02	0.1578	TRUE	0	0	0	1	0	FALSE	ACH-000674
NUGC4_STOMACH	HAAO--THADA	3	5	HAAO	2775	chr2:43015669:-	THADA	66004	chr2:43460021:-	ONLY_REF_SPLICE	YES	11	66	0.42	0.11	0.043	0.0717	HAAO->3-hydroxyanthranilate_3,4-dioxygenase,chr2:42994229-43019733:-,THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-	NUGC4_STOMACH	0.11	0.42	0.1147	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	METTL23--SPHK1	3	5	METTL23	2633	chr17:74725876:+	SPHK1	9736	chr17:74375468:+	ONLY_REF_SPLICE	YES	197	9	0.04	0.47	0.043	0.0717	METTL23->chr17:74722912-74730018:+,methyltransferase_like_23,SPHK1->chr17:74372665-74383941:+,sphingosine_kinase_1	NUGC4_STOMACH	0.04	0.47	0.1147	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	MT-ND1--MT-TL1	4	1	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.0574	0.0143	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NUGC4_STOMACH	0.56	1	0.0717	FALSE	210	95	5	49	0	FALSE	ACH-000674
NUGC4_STOMACH	RP11-123O10.4--GRIP1	4	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0574	0.0143	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NUGC4_STOMACH	1	1	0.0717	FALSE	416	2512	207	587	0	FALSE	ACH-000674
NUGC4_STOMACH	ARHGDIA--EME1	4	0	ARHGDIA	1109	chr17:79829174:-	EME1	7689	chr17:48450583:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,EME1->chr17:48450581-48458844:+,essential_meiotic_structure-specific_endonuclease_1	NUGC4_STOMACH	1	1	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	METTL23--SPHK1	3	4	METTL23	2633	chr17:74725876:+	SPHK1	14991	chr17:74381532:+	ONLY_REF_SPLICE	YES	197	699	0.03	0.01	0.043	0.0574	METTL23->chr17:74722912-74730018:+,methyltransferase_like_23,SPHK1->chr17:74372665-74383941:+,sphingosine_kinase_1	NUGC4_STOMACH	0.01	0.03	0.1004	TRUE	0	0	0	1	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ATP8	4	0	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	1	1	0.0574	FALSE	230	197	14	283	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ATP6--MT-CO1	3	2	MT-ATP6	1079	chrM:8605:+	MT-CO1	5225	chrM:6447:+	INCL_NON_REF_SPLICE	YES	9100	32625	0	0	0.043	0.0287	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NUGC4_STOMACH	0	0	0.0717	FALSE	183	104	9	328	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	20134	1653	0	0	0.043	0.0287	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	0	0	0.0717	FALSE	231	205	14	283	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-CO3--MT-ATP8	3	1	MT-CO3	1162	chrM:9368:+	MT-ATP8	4888	chrM:8469:+	INCL_NON_REF_SPLICE	NO	9423	1	0	0.8	0.043	0.0143	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	0	0.8	0.0573	FALSE	16	100	1	11	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-CO3--MT-ATP8	3	1	MT-CO3	1138	chrM:9344:+	MT-ATP8	4906	chrM:8487:+	INCL_NON_REF_SPLICE	YES	6271	1	0	0.8	0.043	0.0143	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	0	0.8	0.0573	FALSE	16	100	1	11	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND1--MT-TL1	3	1	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0.0143	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NUGC4_STOMACH	1	1	0.0573	FALSE	210	95	5	49	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-TA--MT-TC	3	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0.0143	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUGC4_STOMACH	1	1	0.0573	FALSE	462	80	0	856	0	FALSE	ACH-000674
NUGC4_STOMACH	PTPRK--TNFRSF21	3	1	PTPRK	24436	chr6:128385903:-	TNFRSF21	57845	chr6:47221257:-	ONLY_REF_SPLICE	YES	480	283	0.01	0.01	0.043	0.0143	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	NUGC4_STOMACH	0.01	0.01	0.0573	FALSE	0	0	0	1	0	FALSE	ACH-000674
NUGC4_STOMACH	SAMD5--SASH1	3	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	22	3	0.15	0.57	0.043	0.0143	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NUGC4_STOMACH	0.15	0.57	0.0573	TRUE	53	396	64	110	0	FALSE	ACH-000674
NUGC4_STOMACH	AC104389.28--HBE1	3	0	AC104389.28	1084	chr11:5526799:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NUGC4_STOMACH	1	1	0.043	TRUE	0	16	0	53	13	FALSE	ACH-000674
NUGC4_STOMACH	ARHGDIA--KCNJ2	2	4	ARHGDIA	1109	chr17:79829174:-	KCNJ2	9716	chr17:68170965:+	ONLY_REF_SPLICE	YES	1	6	0.86	0.5	0.0287	0.0574	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,KCNJ2->chr17:68164814-68176189:+,potassium_voltage-gated_channel_subfamily_J_member_2	NUGC4_STOMACH	0.5	0.86	0.0861	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	EIF1--RPL5	3	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	NUGC4_STOMACH	1	1	0.043	TRUE	0	0	0	39	0	FALSE	ACH-000674
NUGC4_STOMACH	FHIT--UQCRC1	2	4	FHIT	7819	chr3:60807613:-	UQCRC1	25533	chr3:48647438:-	ONLY_REF_SPLICE	YES	4	2	0.6	0.75	0.0287	0.0574	FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad,UQCRC1->chr3:48636435-48648409:-,ubiquinol-cytochrome_c_reductase_core_protein_I	NUGC4_STOMACH	0.6	0.75	0.0861	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	FTH1--ACTG1	3	0	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NUGC4_STOMACH	1	1	0.043	TRUE	0	0	0	64	0	FALSE	ACH-000674
NUGC4_STOMACH	METTL23--SPHK1	2	4	METTL23	1349	chr17:74723260:+	SPHK1	14991	chr17:74381532:+	ONLY_REF_SPLICE	YES	163	699	0.04	0.01	0.0287	0.0574	METTL23->chr17:74722912-74730018:+,methyltransferase_like_23,SPHK1->chr17:74372665-74383941:+,sphingosine_kinase_1	NUGC4_STOMACH	0.01	0.04	0.0861	FALSE	0	0	0	1	0	FALSE	ACH-000674
NUGC4_STOMACH	METTL23--SPHK1	2	4	METTL23	2633	chr17:74725876:+	SPHK1	11077	chr17:74377618:+	ONLY_REF_SPLICE	YES	197	11	0.03	0.35	0.0287	0.0574	METTL23->chr17:74722912-74730018:+,methyltransferase_like_23,SPHK1->chr17:74372665-74383941:+,sphingosine_kinase_1	NUGC4_STOMACH	0.03	0.35	0.0861	TRUE	0	0	0	1	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-CO3--MT-ATP8	3	0	MT-CO3	1123	chrM:9329:+	MT-ATP8	4843	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	1	1	0.043	FALSE	16	100	1	11	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	1	1	0.043	FALSE	230	198	14	283	0	FALSE	ACH-000674
NUGC4_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC4_STOMACH	1	1	0.043	FALSE	230	193	14	283	0	FALSE	ACH-000674
NUGC4_STOMACH	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.75	0.86	0.0287	0.0574	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NUGC4_STOMACH	0.75	0.86	0.0861	FALSE	515	4851	409	746	0	FALSE	ACH-000674
NUGC4_STOMACH	ADAP1--SUN1	2	2	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	1167	364	0	0.01	0.0287	0.0287	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	NUGC4_STOMACH	0	0.01	0.0574	FALSE	16	22	0	27	0	FALSE	ACH-000674
NUGC4_STOMACH	ADAP1--SUN1	2	1	ADAP1	9672	chr7:959605:-	SUN1	48590	chr7:925693:+	ONLY_REF_SPLICE	YES	1167	0	0	1	0.0287	0.0143	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	NUGC4_STOMACH	0	1	0.043	FALSE	0	4	0	9	2	FALSE	ACH-000674
NUGC4_STOMACH	ARHGAP27--JMJD6	2	1	ARHGAP27	2670	chr17:43510118:-	JMJD6	27913	chr17:74718015:-	ONLY_REF_SPLICE	YES	6	96	0.33	0.03	0.0287	0.0143	ARHGAP27->Rho_GTPase_activating_protein_27,chr17:43471275-43511787:-,JMJD6->arginine_demethylase_and_lysine_hydroxylase,chr17:74708919-74722866:-	NUGC4_STOMACH	0.03	0.33	0.043	TRUE	0	0	0	1	0	FALSE	ACH-000674
NUGC4_STOMACH	CAPZA2--MET	2	1	CAPZA2	3371	chr7:116502704:+	MET	27625	chr7:116339125:+	ONLY_REF_SPLICE	YES	278	991	0.01	0	0.0287	0.0143	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	NUGC4_STOMACH	0	0.01	0.043	FALSE	0	0	0	3	0	FALSE	ACH-000674
NUGC4_STOMACH	MTUS1--FGL1	1	5	MTUS1	9085	chr8:17601113:-	FGL1	42338	chr8:17753925:-	ONLY_REF_SPLICE	NO	304	0	0.02	1	0.0143	0.0717	YOSHIHARA_TCGA_num_samples[LUAD:2],LOCAL_REARRANGEMENT:-:[63463],MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1,FGL1->chr8:17721889-17767874:-,fibrinogen_like_1	NUGC4_STOMACH	0.02	1	0.086	TRUE	0	0	0	1	0	FALSE	ACH-000674
NUGC4_STOMACH	RP11-680G10.1--GSE1	1	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	18	1	0.25	0.0143	0.0717	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NUGC4_STOMACH	0.25	1	0.086	TRUE	458	1351	185	561	0	FALSE	ACH-000674
NUGC4_STOMACH	AC104389.28--HBE1	2	0	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NUGC4_STOMACH	1	1	0.0287	TRUE	0	11	0	26	8	FALSE	ACH-000674
NUGC4_STOMACH	AC104389.28--HBE1	2	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NUGC4_STOMACH	1	1	0.0287	TRUE	0	16	0	53	13	FALSE	ACH-000674
NUGC4_STOMACH	C14orf37--RTN4	2	0	C14orf37	2258	chr14:58758353:-	RTN4	35515	chr2:55214834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	NUGC4_STOMACH	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	ETV6--PDIA5	2	0	ETV6	1307	chr12:11803094:+	PDIA5	23339	chr3:122808015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,PDIA5->chr3:122785909-122944074:+,protein_disulfide_isomerase_family_A_member_5	NUGC4_STOMACH	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	F11R--APOA2	2	0	F11R	3639	chr1:160990800:-	APOA2	15966	chr1:161192312:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	F11R->F11_receptor,chr1:160965001-160991138:-,chr1:160967747-161008752:-,APOA2->apolipoprotein_A2,chr1:161192082-161193421:-	NUGC4_STOMACH	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	FUBP1--IVNS1ABP	2	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NUGC4_STOMACH	1	1	0.0287	TRUE	1	4	0	16	0	TRUE	ACH-000674
NUGC4_STOMACH	NDUFA4--FAM129B	2	0	NDUFA4	1241	chr7:10979643:-	FAM129B	16137	chr9:130286125:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,FAM129B->chr9:130267618-130341268:-,family_with_sequence_similarity_129_member_B	NUGC4_STOMACH	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	PTPRK--CBX3	2	0	PTPRK	17404	chr6:128505577:-	CBX3	55017	chr7:26242591:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,CBX3->chr7:26240782-26252976:+,chromobox_3	NUGC4_STOMACH	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.83	1	0.0143	0.0574	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NUGC4_STOMACH	0.83	1	0.0717	FALSE	192	492	57	212	0	FALSE	ACH-000674
NUGC4_STOMACH	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0143	0.0574	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NUGC4_STOMACH	0.71	1	0.0717	FALSE	275	511	55	178	0	FALSE	ACH-000674
NUGC4_STOMACH	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.83	0.83	0.0143	0.0574	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NUGC4_STOMACH	0.83	0.83	0.0717	FALSE	467	2173	244	435	0	FALSE	ACH-000674
NUGC4_STOMACH	SLC25A45--ECI1	2	0	SLC25A45	2827	chr11:65149346:-	ECI1	18762	chr16:2290146:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	SLC25A45->chr11:65142663-65151172:-,solute_carrier_family_25_member_45,ECI1->chr16:2289396-2302301:-,enoyl-CoA_delta_isomerase_1	NUGC4_STOMACH	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	SLC35E2B--REV1	2	0	SLC35E2B	6203	chr1:1602948:-	REV1	37436	chr2:100027329:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	SLC35E2B->chr1:1592939-1624167:-,solute_carrier_family_35_member_E2B,REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-	NUGC4_STOMACH	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000674
NUGC4_STOMACH	ADAP1--C7orf50	1	3	ADAP1	9672	chr7:959605:-	C7orf50	29696	chr7:1049779:-	ONLY_REF_SPLICE	YES	1167	395	0	0.01	0.0143	0.043	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_REARRANGEMENT:-:[41579],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	NUGC4_STOMACH	0	0.01	0.0573	FALSE	0	6	0	10	1	FALSE	ACH-000674
NUGC4_STOMACH	ADAP1--SUN1	1	2	ADAP1	9672	chr7:959605:-	SUN1	24014	chr7:872142:+	ONLY_REF_SPLICE	YES	1167	5	0	0.38	0.0143	0.0287	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	NUGC4_STOMACH	0	0.38	0.043	FALSE	0	1	0	6	0	FALSE	ACH-000674
NUGC4_STOMACH	EPS8--STRAP	1	1	EPS8	3576	chr12:15942095:-	STRAP	37698	chr12:16042862:+	ONLY_REF_SPLICE	YES	845	627	0	0	0.0143	0.0143	LOCAL_INVERSION:-:+:[62],EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,STRAP->chr12:16035325-16056412:+,serine/threonine_kinase_receptor_associated_protein	NUGC4_STOMACH	0	0	0.0286	FALSE	0	2	0	2	1	FALSE	ACH-000674
NUGC4_STOMACH	JAG2--RPS18	1	1	JAG2	13836	chr14:105609819:-	RPS18	19416	chr6:33239865:+	ONLY_REF_SPLICE	YES	68	0	0.03	1	0.0143	0.0143	JAG2->Oncogene{Bushman},chr14:105607318-105635161:-,jagged_2,RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18	NUGC4_STOMACH	0.03	1	0.0286	TRUE	0	0	0	1	0	FALSE	ACH-000674
NUGC4_STOMACH	RNF43--FCAMR	1	1	RNF43	5475	chr17:56448272:-	FCAMR	19062	chr1:207143565:-	ONLY_REF_SPLICE	YES	503	0	0	1	0.0143	0.0143	RNF43->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:56429861-56494956:-,ring_finger_protein_43,FCAMR->Fc_fragment_of_IgA_and_IgM_receptor,chr1:207131310-207143970:-	NUGC4_STOMACH	0	1	0.0286	FALSE	0	0	0	1	0	FALSE	ACH-000674
NUGC4_STOMACH	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	118	1	0.02	0.0143	0.0143	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NUGC4_STOMACH	0.02	1	0.0286	TRUE	64	13	3	59	0	FALSE	ACH-000674
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	208	60	IGKV2-30	1681	chr2:89544399:-	AC096579.7	9026	chr2:89130914:-	INCL_NON_REF_SPLICE	YES	36	0	0.88	1	1.5915	0.4591	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	2.0506	TRUE	0	0	0	4	0	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	121	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9258	0.2295	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.1553	TRUE	508	994	45	981	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	114	10	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.8723	0.0765	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9488	TRUE	477	1352	189	275	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	103	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7881	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7881	TRUE	0	0	0	518	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	64	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	120	5	0.35	0.93	0.4897	0.0153	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.93	0.505	TRUE	519	3926	326	965	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUTM2A-AS1--MINPP1	43	18	NUTM2A-AS1	14159	chr10:89048199:-	MINPP1	27523	chr10:89268093:+	ONLY_REF_SPLICE	YES	39	0	0.61	1	0.329	0.1377	GTEx_FI:{Skin=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	1	0.4667	TRUE	3	1	0	6	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	43	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.329	0.0536	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3826	FALSE	499	1288	110	792	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	145	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	11	0	0.93	1	0.0536	1.1094	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	1.163	FALSE	344	826	44	306	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	36	28	IGKV2-30	1587	chr2:89544493:-	AC096579.7	9026	chr2:89130914:-	INCL_NON_REF_SPLICE	YES	60	0	0.52	1	0.2754	0.2142	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	1	0.4896	TRUE	0	0	0	4	0	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	153	MT-ND4	1968	chrM:11727:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	9013	0	0.02	1	0.0306	1.1707	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	1.2013	FALSE	344	827	44	306	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	152	MT-ND4	1531	chrM:11290:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	239	0	0.39	1	0.023	1.163	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	1.186	FALSE	344	827	44	306	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	145	MT-ND4	1170	chrM:10929:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	YES	12	0	0.93	1	0.023	1.1094	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	1.1324	FALSE	344	826	44	306	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	142	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	9	0	0.94	1	0.023	1.0865	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	1.1095	FALSE	344	826	44	306	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	97	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	7	0	0.94	1	0.0612	0.7422	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.8034	FALSE	344	826	44	306	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	97	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	0	0.96	1	0.0612	0.7422	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.8034	FALSE	344	821	44	306	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	26	18	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.1989	0.1377	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.3366	FALSE	499	1288	110	792	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	98	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	16	0	0.86	1	0.0306	0.7498	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.7804	FALSE	344	827	44	306	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	28	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2142	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2142	TRUE	0	0	0	100	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	22	9	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1683	0.0689	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2372	FALSE	499	1288	110	792	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-166D18.1--CLSTN2	23	5	RP11-166D18.1	2232	chr3:139557293:+	CLSTN2	7804	chr3:139894793:+	ONLY_REF_SPLICE	YES	4	0	0.88	1	0.176	0.0383	NEIGHBORS[75291],RP11-166D18.1->chr3:139556062-139578736:+,CLSTN2->calsyntenin_2,chr3:139654027-140296239:+	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.2143	FALSE	0	2	0	1	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	23	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2009	0	0.01	1	0.176	0.0077	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1837	FALSE	13	9	0	364	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUTM2A-AS1--MINPP1	14	24	NUTM2A-AS1	16801	chr10:89005872:-	MINPP1	27523	chr10:89268093:+	ONLY_REF_SPLICE	YES	17	0	0.69	1	0.1071	0.1836	GTEx_FI:{Skin=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	0.2907	TRUE	1	1	0	6	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-509E10.1--RBFOX1	17	2	RP11-509E10.1	2178	chr16:6109254:+	RBFOX1	9676	chr16:6366996:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1301	0.0153	NEIGHBORS_OVERLAP:+:+:[35979],RP11-509E10.1->chr16:6106976-6142955:+,RBFOX1->RNA_binding_protein,_fox-1_homolog_1,chr16:6069095-7763340:+	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1454	FALSE	1	0	0	2	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	9	24	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	121	0	0.21	1	0.0689	0.1836	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.2525	FALSE	344	827	44	306	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	38	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	205	0	0.17	1	0.0383	0.2908	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.3291	FALSE	344	827	44	306	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	6	23	IGKV2-30	1587	chr2:89544493:-	AC096579.7	9033	chr2:89130907:-	INCL_NON_REF_SPLICE	YES	60	2	0.33	0.94	0.0459	0.176	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.94	0.2219	TRUE	0	0	0	4	0	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	35	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.023	0.2678	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.2908	FALSE	344	821	44	306	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2056	0	0	1	0.0689	0.0077	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0766	FALSE	13	9	0	364	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0689	TRUE	0	0	0	434	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	9	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0689	TRUE	0	0	0	518	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	3	21	IGKV2-30	1681	chr2:89544399:-	AC096579.7	9070	chr2:89130870:-	INCL_NON_REF_SPLICE	YES	36	13	0.4	0.65	0.023	0.1607	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.65	0.1837	TRUE	0	0	0	4	0	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	5	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1773	66	0.01	0.15	0.0536	0.0383	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.15	0.0919	FALSE	216	209	16	281	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	21	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10	0	0.71	1	0.023	0.1607	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.1837	FALSE	344	826	44	306	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	9	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	13	0	0.54	1	0.0459	0.0689	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	1	0.1148	FALSE	344	827	44	306	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7341	18	0	0.31	0.0536	0.0077	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.31	0.0613	FALSE	231	205	14	283	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-CO3	5	8	IGH@	97937	chr14:106320757:-	MT-CO3	131822	chrM:9227:+	INCL_NON_REF_SPLICE	YES	5342	0	0	1	0.0383	0.0612	IGH@->Oncogene{Bushman},MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0995	FALSE	0	0	0	1	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	6	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0459	0.023	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0689	TRUE	274	363	69	150	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	14	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	11	0	0.61	1	0.023	0.1071	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	1	0.1301	FALSE	344	826	44	306	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0459	FALSE	230	193	14	283	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUTM2A-AS1--MINPP1	4	6	NUTM2A-AS1	7572	chr10:89086387:-	MINPP1	27523	chr10:89268093:+	ONLY_REF_SPLICE	YES	63	0	0.14	1	0.0306	0.0459	GTEx_FI:{Skin=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.0765	TRUE	3	0	0	3	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	1	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	8411	1354	0	0	0.0383	0.0077	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.046	FALSE	231	217	16	283	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	9	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	5	0	0.71	1	0.023	0.0689	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.0919	FALSE	344	826	44	306	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	5	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0383	0.0077	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.046	FALSE	46	201	11	112	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL136376.1--RPS28	5	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0383	TRUE	0	0	0	12	0	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	5	0	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0383	TRUE	0	0	0	434	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0383	TRUE	0	0	0	434	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXO1--RP11-172E9.2	4	2	FOXO1	2015	chr13:41239720:-	RP11-172E9.2	12287	chr13:40924439:-	INCL_NON_REF_SPLICE	YES	61	0	0.09	1	0.0306	0.0153	FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,RP11-172E9.2->chr13:40918094-40924440:-	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.0459	TRUE	0	0	0	3	0	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8163	18	0	0.25	0.0306	0.0153	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.25	0.0459	FALSE	231	217	16	283	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	4	1	EEF2	8863	chr19:3977449:-	RPS28	13639	chr19:8386422:+	INCL_NON_REF_SPLICE	YES	3445	1	0	0.83	0.0306	0.0077	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.83	0.0383	FALSE	0	0	0	100	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	5	MT-ND4	1008	chrM:10767:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.023	0.0383	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0613	FALSE	344	821	44	306	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	11	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0077	0.0842	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0919	TRUE	160	277	29	98	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUTM2A-AS1--MINPP1	1	10	NUTM2A-AS1	13105	chr10:89067714:-	MINPP1	27523	chr10:89268093:+	ONLY_REF_SPLICE	YES	53	0	0.17	1	0.0077	0.0765	GTEx_FI:{Skin=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.0842	TRUE	0	0	0	1	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL136376.1--RPS28	3	0	AL136376.1	2362	chr1:116915870:-	RPS28	5709	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.023	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	0	0	0	12	0	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf25--DAZAP1	3	0	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.023	TRUE	6	7	1	24	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--CIC	2	1	PPP1R12C	8950	chr19:55610152:-	CIC	27605	chr19:42790923:+	ONLY_REF_SPLICE	YES	173	33	0.02	0.08	0.0153	0.0077	GTEx_FI:{Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},GTEx_v2:{count=5;pct=0.06%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Nerve_-_Tibial=1,Spleen=1,Colon_-_Sigmoid=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CIC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},capicua_transcriptional_repressor,chr19:42772689-42799949:+	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.08	0.023	TRUE	2	1	0	2	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	2	1	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	YES	26	68	0.1	0.04	0.0153	0.0077	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.1	0.023	TRUE	4	3	0	21	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DPH6-AS1--RP11-684B21.1	2	0	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0153	0	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0153	TRUE	17	119	17	33	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF4A2--LRMP	2	0	EIF4A2	5678	chr3:186505671:+	LRMP	40188	chr12:25259877:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0153	0	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0153	TRUE	0	0	0	1	0	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM6--RHOA	2	0	RBM6	3185	chr3:50000118:+	RHOA	37115	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0153	0	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Lung=1,Pituitary=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0153	TRUE	0	4	1	6	1	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SAMD12--EIF3H	2	0	SAMD12	2373	chr8:119592954:-	EIF3H	26651	chr8:117738411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0153	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hypothalamus=1},SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0153	TRUE	0	0	0	2	0	TRUE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0153	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0153	TRUE	5	8	0	33	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--SRSF11	1	1	CPSF6	11046	chr12:69656342:+	SRSF11	21235	chr1:70687295:+	ONLY_REF_SPLICE	YES	150	162	0.01	0.01	0.0077	0.0077	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0154	FALSE	0	0	0	1	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTDC1--ARHGAP15	1	1	GTDC1	19576	chr2:144764749:-	ARHGAP15	70348	chr2:144525558:+	ONLY_REF_SPLICE	YES	34	129	0.06	0.02	0.0077	0.0077	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.03%,GTEx_FI:{Nerve=[count:4=pct:2.4],Blood=[count:4=pct:2.3],Heart=[count:1=pct:0.4],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=27;pct=0.31%;dist=Nerve_-_Tibial=7,Whole_Blood=5,Lung=3,Artery_-_Aorta=3,Heart_-_Left_Ventricle=2,Spleen=2,Artery_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Atrial_Appendage=1},GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.06	0.0154	TRUE	1	1	0	1	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTDC1--ARHGAP15	1	1	GTDC1	11556	chr2:144966170:-	ARHGAP15	70348	chr2:144525558:+	ONLY_REF_SPLICE	YES	40	129	0.05	0.02	0.0077	0.0077	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.03%,GTEx_FI:{Nerve=[count:4=pct:2.4],Blood=[count:4=pct:2.3],Heart=[count:1=pct:0.4],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=27;pct=0.31%;dist=Nerve_-_Tibial=7,Whole_Blood=5,Lung=3,Artery_-_Aorta=3,Heart_-_Left_Ventricle=2,Spleen=2,Artery_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Atrial_Appendage=1},GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.0154	TRUE	0	0	0	1	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--CELF1	1	1	IGLL5	1480	chr22:23230439:+	CELF1	17830	chr11:47510576:-	ONLY_REF_SPLICE	NO	1046	282	0	0.01	0.0077	0.0077	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0154	FALSE	0	0	0	1	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--MRPS27	1	1	IGLL5	1480	chr22:23230439:+	MRPS27	11125	chr5:71593529:-	ONLY_REF_SPLICE	YES	1046	194	0	0.01	0.0077	0.0077	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,MRPS27->chr5:71515236-71616473:-,mitochondrial_ribosomal_protein_S27	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0154	FALSE	0	0	0	1	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--NLRC5	1	1	IGLL5	1480	chr22:23230439:+	NLRC5	28531	chr16:57073693:+	ONLY_REF_SPLICE	YES	1046	36	0	0.05	0.0077	0.0077	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,NLRC5->NLR_family,_CARD_domain_containing_5,chr16:57023397-57117443:+	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0154	FALSE	0	0	0	1	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	7	19	0.22	0.1	0.0077	0.0077	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.22	0.0154	FALSE	16	356	14	466	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDCCAG8--DESI2	1	1	SDCCAG8	23286	chr1:243589860:+	DESI2	34566	chr1:244849899:+	ONLY_REF_SPLICE	YES	17	79	0.11	0.02	0.0077	0.0077	SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8,DESI2->chr1:244816237-244872335:+,desumoylating_isopeptidase_2	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.11	0.0154	TRUE	0	0	0	1	0	FALSE	ACH-000786
DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZCCHC7--PAX5	1	1	ZCCHC7	14566	chr9:37327831:+	PAX5	24380	chr9:37015191:-	ONLY_REF_SPLICE	YES	182	124	0.01	0.02	0.0077	0.0077	LOCAL_INVERSION:+:-:[86433],ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7,PAX5->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:36833272-37034103:-,paired_box_5	DAUDI_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0154	FALSE	0	0	0	1	0	FALSE	ACH-000786
DANG_PANCREAS	MELK--ZCCHC7	107	211	MELK	2433	chr9:36581736:+	ZCCHC7	33515	chr9:37302185:+	ONLY_REF_SPLICE	YES	274	35	0.54	0.9	1.061	2.0922	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.54	0.9	3.1532	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	TIMM23B--LINC00843	106	41	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0511	0.4065	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DANG_PANCREAS	0.99	1	1.4576	TRUE	508	994	45	981	0	FALSE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	35	217	MELK	3519	chr9:36583709:+	ZCCHC7	33515	chr9:37302185:+	ONLY_REF_SPLICE	YES	237	35	0.52	0.88	0.3471	2.1517	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.52	0.88	2.4988	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	TIMM23--RP11-464F9.1	62	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6148	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DANG_PANCREAS	1	1	0.6148	TRUE	519	3926	326	965	0	FALSE	ACH-000243
DANG_PANCREAS	ITGAV--ZC3H15	48	15	ITGAV	1459	chr2:187455250:+	ZC3H15	37906	chr2:187359960:+	ONLY_REF_SPLICE	YES	66	640	0.49	0.09	0.476	0.1487	LOCAL_REARRANGEMENT:+:[80702],ITGAV->chr2:187454792-187545628:+,integrin_subunit_alpha_V,ZC3H15->chr2:187350883-187374090:+,zinc_finger_CCCH-type_containing_15	DANG_PANCREAS	0.09	0.49	0.6247	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	OR51S1--TP53I11	51	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5057	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	DANG_PANCREAS	1	1	0.5057	TRUE	402	216	10	229	0	FALSE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	20	117	MELK	1146	chr9:36573004:+	ZCCHC7	33515	chr9:37302185:+	ONLY_REF_SPLICE	YES	130	35	0.51	0.8	0.1983	1.1601	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.51	0.8	1.3584	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	8	158	MELK	2433	chr9:36581736:+	ZCCHC7	34559	chr9:37304185:+	ONLY_REF_SPLICE	YES	274	44	0.38	0.79	0.0793	1.5667	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.38	0.79	1.646	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ND4L	4	140	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	86	0	0.63	1	0.0397	1.3882	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DANG_PANCREAS	0.63	1	1.4279	FALSE	344	827	44	306	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ND4L	32	23	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1731	0	0.03	1	0.3173	0.2281	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DANG_PANCREAS	0.03	1	0.5454	FALSE	344	827	44	306	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ND4L	3	135	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	36	0	0.79	1	0.0297	1.3386	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DANG_PANCREAS	0.79	1	1.3683	FALSE	344	826	44	306	0	FALSE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	1	139	MELK	1337	chr9:36573195:+	ZCCHC7	33515	chr9:37302185:+	ONLY_REF_SPLICE	YES	281	35	0.33	0.8	0.0099	1.3783	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.33	0.8	1.3882	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	33	3	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	13138	0	0	1	0.3272	0.0297	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	1	0.3569	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ND4L	6	100	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	7635	0	0.01	1	0.0595	0.9916	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DANG_PANCREAS	0.01	1	1.0511	FALSE	344	827	44	306	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	28	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	12090	6	0	0.83	0.2776	0.0198	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.83	0.2974	FALSE	230	193	14	283	0	FALSE	ACH-000243
DANG_PANCREAS	PUM2--RBKS	22	25	PUM2	14055	chr2:20494137:-	RBKS	33722	chr2:28093757:-	ONLY_REF_SPLICE	YES	172	7	0.21	0.87	0.2181	0.2479	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,RBKS->chr2:28004231-28113965:-,ribokinase	DANG_PANCREAS	0.21	0.87	0.466	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	PUM2--RBKS	23	21	PUM2	15194	chr2:20490413:-	RBKS	36975	chr2:28081438:-	ONLY_REF_SPLICE	YES	152	7	0.22	0.86	0.2281	0.2082	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,RBKS->chr2:28004231-28113965:-,ribokinase	DANG_PANCREAS	0.22	0.86	0.4363	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MT-ND5--MT-ATP8	24	13	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.238	0.1289	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0.95	1	0.3669	FALSE	43	37	8	105	0	FALSE	ACH-000243
DANG_PANCREAS	NPM1P24--SET	27	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2677	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DANG_PANCREAS	1	1	0.2677	TRUE	0	0	0	434	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-CO2	24	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	56	5	0.34	0.85	0.238	0.0496	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DANG_PANCREAS	0.34	0.85	0.2876	FALSE	59	21	0	114	0	FALSE	ACH-000243
DANG_PANCREAS	HSPBP1--ZSWIM6	25	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2479	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	DANG_PANCREAS	1	1	0.2479	TRUE	47	32	1	28	0	FALSE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	2	92	MELK	1146	chr9:36573004:+	ZCCHC7	34559	chr9:37304185:+	ONLY_REF_SPLICE	YES	130	44	0.42	0.68	0.0198	0.9123	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.42	0.68	0.9321	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ND4L	4	82	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	13	0	0.87	1	0.0397	0.8131	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DANG_PANCREAS	0.87	1	0.8528	FALSE	344	821	44	306	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND5--MT-ATP8	24	2	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3950	8	0.01	0.76	0.238	0.0198	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0.01	0.76	0.2578	FALSE	43	37	8	105	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	23	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12187	8	0	0.75	0.2281	0.0099	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.75	0.238	FALSE	230	198	14	283	0	FALSE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	3	78	MELK	2433	chr9:36581736:+	ZCCHC7	35685	chr9:37305541:+	ONLY_REF_SPLICE	YES	274	156	0.23	0.34	0.0297	0.7734	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.23	0.34	0.8031	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	PUM2--RBKS	14	34	PUM2	15194	chr2:20490413:-	RBKS	33722	chr2:28093757:-	ONLY_REF_SPLICE	YES	152	7	0.24	0.87	0.1388	0.3371	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,RBKS->chr2:28004231-28113965:-,ribokinase	DANG_PANCREAS	0.24	0.87	0.4759	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	1	81	MELK	3519	chr9:36583709:+	ZCCHC7	35685	chr9:37305541:+	ONLY_REF_SPLICE	YES	237	156	0.26	0.34	0.0099	0.8032	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.26	0.34	0.8131	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	RP11-680G10.1--GSE1	19	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	45	1	0.34	0.1884	0.0397	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DANG_PANCREAS	0.34	1	0.2281	TRUE	465	1949	224	605	0	FALSE	ACH-000243
DANG_PANCREAS	RP11-114H23.1--RP11-114H23.2	13	19	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	5	0	0.86	1	0.1289	0.1884	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	DANG_PANCREAS	0.86	1	0.3173	FALSE	81	155	12	160	0	FALSE	ACH-000243
DANG_PANCREAS	C15orf57--CBX3	15	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	71	65	0.25	0.27	0.1487	0.0892	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DANG_PANCREAS	0.25	0.27	0.2379	TRUE	267	562	48	632	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	15	9	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	15322	11991	0	0	0.1487	0.0892	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	0	0.2379	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	PUM2--RBKS	13	15	PUM2	14055	chr2:20494137:-	RBKS	36975	chr2:28081438:-	ONLY_REF_SPLICE	YES	172	7	0.14	0.8	0.1289	0.1487	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,RBKS->chr2:28004231-28113965:-,ribokinase	DANG_PANCREAS	0.14	0.8	0.2776	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	HSP90AB1--MT-RNR2	16	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4781	0	0	1	0.1587	0.0198	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	1	0.1785	FALSE	13	9	0	364	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	14	10	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	15322	0	0	1	0.1388	0.0992	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	1	0.238	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	PLXDC1--TAF13	15	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1487	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	DANG_PANCREAS	1	1	0.1487	TRUE	7	10	0	216	0	FALSE	ACH-000243
DANG_PANCREAS	RP11-96H19.1--RP11-446N19.1	11	15	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.9	1	0.1091	0.1487	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DANG_PANCREAS	0.9	1	0.2578	FALSE	407	2205	196	549	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	11	14	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	17997	0	0	1	0.1091	0.1388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	1	0.2479	FALSE	231	217	16	283	0	FALSE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	3	45	MELK	1146	chr9:36573004:+	ZCCHC7	35685	chr9:37305541:+	ONLY_REF_SPLICE	YES	130	156	0.27	0.24	0.0297	0.4462	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.24	0.27	0.4759	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	10	16	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16442	8	0	0.76	0.0992	0.1587	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.76	0.2579	FALSE	231	217	16	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ND4L	8	23	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1762	0	0.02	1	0.0793	0.2281	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DANG_PANCREAS	0.02	1	0.3074	FALSE	344	827	44	306	0	FALSE	ACH-000243
DANG_PANCREAS	MELK--ZCCHC7	1	50	MELK	1337	chr9:36573195:+	ZCCHC7	35685	chr9:37305541:+	ONLY_REF_SPLICE	YES	281	156	0.15	0.25	0.0099	0.4958	{Klijn_CCL:Pancreas=1},MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	DANG_PANCREAS	0.15	0.25	0.5057	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ND4L	4	36	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1542	0	0.03	1	0.0397	0.357	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DANG_PANCREAS	0.03	1	0.3967	FALSE	344	827	44	306	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	12	3	MT-ATP6	1123	chrM:8649:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	13060	12297	0	0	0.119	0.0297	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	0	0.1487	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	MACROD1--MEN1	11	6	MACROD1	3565	chr11:63918711:-	MEN1	14271	chr11:64578377:-	ONLY_REF_SPLICE	YES	179	0	0.09	1	0.1091	0.0595	MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-,MEN1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:64570982-64578766:-,menin_1	DANG_PANCREAS	0.09	1	0.1686	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	7	22	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	16393	0	0	1	0.0694	0.2181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	1	0.2875	FALSE	231	217	16	283	0	FALSE	ACH-000243
DANG_PANCREAS	KAT6B--DDX50	11	5	KAT6B	5638	chr10:76603236:+	DDX50	33697	chr10:70666467:+	ONLY_REF_SPLICE	YES	8	292	0.67	0.05	0.1091	0.0496	{Klijn_CCL:Pancreas=1},KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B,DDX50->DEAD-box_helicase_50,chr10:70661034-70706603:+	DANG_PANCREAS	0.05	0.67	0.1587	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	11	3	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	11775	0	0	1	0.1091	0.0297	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	1	0.1388	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	5	24	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	14261	0	0	1	0.0496	0.238	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	1	0.2876	FALSE	231	217	16	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	7	16	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15630	254	0	0.08	0.0694	0.1587	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.08	0.2281	FALSE	231	217	16	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	9	7	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	13241	1	0	0.94	0.0892	0.0694	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	0.94	0.1586	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	5	22	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	16039	0	0	1	0.0496	0.2181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	1	0.2677	FALSE	231	217	16	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ND4L	3	30	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0297	0.2975	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DANG_PANCREAS	0.92	1	0.3272	FALSE	344	821	44	306	0	FALSE	ACH-000243
DANG_PANCREAS	RP11-680G10.1--GSE1	9	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	19	1	0.44	0.0892	0.0595	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DANG_PANCREAS	0.44	1	0.1487	TRUE	458	1351	185	561	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND5--MT-ATP8	7	13	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0694	0.1289	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	1	1	0.1983	FALSE	43	37	8	105	0	FALSE	ACH-000243
DANG_PANCREAS	RPSAP52--HMGA2	9	5	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	18	1027	0.44	0.01	0.0892	0.0496	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	DANG_PANCREAS	0.01	0.44	0.1388	FALSE	0	59	0	125	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	9	3	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	11775	12297	0	0	0.0892	0.0297	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	0	0.1189	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	3	27	MT-ND4	2301	chrM:12060:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0297	0.2677	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0.91	1	0.2974	FALSE	209	205	15	279	0	FALSE	ACH-000243
DANG_PANCREAS	RP11-114H23.1--RP11-114H23.2	6	15	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.0595	0.1487	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	DANG_PANCREAS	0.81	1	0.2082	FALSE	81	155	12	160	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	6	14	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18063	0	0	1	0.0595	0.1388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	1	0.1983	FALSE	231	217	16	283	0	FALSE	ACH-000243
DANG_PANCREAS	PUM2--RBKS	4	22	PUM2	15194	chr2:20490413:-	RBKS	35841	chr2:28084413:-	ONLY_REF_SPLICE	YES	152	7	0.15	0.79	0.0397	0.2181	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,RBKS->chr2:28004231-28113965:-,ribokinase	DANG_PANCREAS	0.15	0.79	0.2578	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-CO2	3	24	MT-ATP6	1408	chrM:8934:+	MT-CO2	4720	chrM:7624:+	INCL_NON_REF_SPLICE	NO	74	0	0.27	1	0.0297	0.238	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DANG_PANCREAS	0.27	1	0.2677	FALSE	59	21	0	114	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	7	8	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	14644	11663	0	0	0.0694	0.0793	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	0	0.1487	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	3	24	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	15337	0	0	1	0.0297	0.238	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	1	0.2677	FALSE	231	217	16	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	3	24	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	15176	0	0	1	0.0297	0.238	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	1	0.2677	FALSE	231	217	16	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	5	15	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	16231	1719	0	0.01	0.0496	0.1487	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.01	0.1983	FALSE	231	217	16	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ND4L	3	22	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	85	0	0.23	1	0.0297	0.2181	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DANG_PANCREAS	0.23	1	0.2478	FALSE	344	826	44	306	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND5--MT-ATP8	8	2	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6209	254	0	0.04	0.0793	0.0198	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.04	0.0991	FALSE	43	37	8	105	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND6--MT-TE	7	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0694	0.0496	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DANG_PANCREAS	1	1	0.119	FALSE	499	1288	110	792	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ND4L	3	20	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	34	0	0.4	1	0.0297	0.1983	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DANG_PANCREAS	0.4	1	0.228	FALSE	344	826	44	306	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-CO2	6	7	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	56	4	0.19	0.76	0.0595	0.0694	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DANG_PANCREAS	0.19	0.76	0.1289	FALSE	59	21	0	114	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	6	7	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	17736	1719	0	0.01	0.0595	0.0694	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.01	0.1289	FALSE	231	205	14	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	3	19	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1	8	0.96	0.73	0.0297	0.1884	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0.73	0.96	0.2181	FALSE	209	205	15	279	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	4	15	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	16433	1117	0	0.02	0.0397	0.1487	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.02	0.1884	FALSE	231	217	16	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	7	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14312	8	0	0.56	0.0694	0.0297	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.56	0.0991	FALSE	231	205	14	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	4	15	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	13385	526	0	0.03	0.0397	0.1487	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.03	0.1884	FALSE	231	217	16	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	4	15	MT-ND4	1754	chrM:11513:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	16179	361	0	0.05	0.0397	0.1487	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.05	0.1884	FALSE	231	217	16	283	0	FALSE	ACH-000243
DANG_PANCREAS	RP11-123O10.4--GRIP1	7	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0694	0.0297	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DANG_PANCREAS	1	1	0.0991	FALSE	416	2512	207	587	0	FALSE	ACH-000243
DANG_PANCREAS	HSP90AB1--MT-RNR2	7	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4781	0	0	1	0.0694	0.0198	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	1	0.0892	FALSE	13	9	0	364	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-CO2	6	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	56	5	0.18	0.71	0.0595	0.0595	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DANG_PANCREAS	0.18	0.71	0.119	FALSE	59	21	0	114	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	3	18	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2286	254	0.01	0.08	0.0297	0.1785	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0.01	0.08	0.2082	FALSE	216	209	16	281	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-CO2	7	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	34	4	0.19	0.67	0.0694	0.0099	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DANG_PANCREAS	0.19	0.67	0.0793	FALSE	59	21	0	114	0	FALSE	ACH-000243
DANG_PANCREAS	RP11-96H19.1--RP11-446N19.1	5	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	1	0.82	0.93	0.0496	0.0892	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DANG_PANCREAS	0.82	0.93	0.1388	FALSE	515	4851	409	746	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	3	16	MT-ND4	1645	chrM:11404:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18558	254	0	0.07	0.0297	0.1587	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.07	0.1884	FALSE	231	217	16	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND6--MT-TE	6	4	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0595	0.0397	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DANG_PANCREAS	1	1	0.0992	FALSE	499	1288	110	792	0	FALSE	ACH-000243
DANG_PANCREAS	PUM2--RBKS	3	16	PUM2	14055	chr2:20494137:-	RBKS	35841	chr2:28084413:-	ONLY_REF_SPLICE	YES	172	7	0.1	0.73	0.0297	0.1587	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,RBKS->chr2:28004231-28113965:-,ribokinase	DANG_PANCREAS	0.1	0.73	0.1884	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	SCRN3--HYDIN	6	3	SCRN3	8341	chr2:175274953:+	HYDIN	51889	chr16:71026113:-	ONLY_REF_SPLICE	YES	61	0	0.13	1	0.0595	0.0297	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	DANG_PANCREAS	0.13	1	0.0892	TRUE	0	0	0	3	0	TRUE	ACH-000243
DANG_PANCREAS	IGFBP4--NPM1	6	2	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	1226	0	0.01	1	0.0595	0.0198	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	DANG_PANCREAS	0.01	1	0.0793	FALSE	0	0	0	38	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	3	14	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	17997	0	0	1	0.0297	0.1388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	1	0.1685	FALSE	231	217	16	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	3	13	MT-ATP6	1400	chrM:8926:+	MT-RNR2	5229	chrM:2218:+	INCL_NON_REF_SPLICE	YES	16652	12462	0	0	0.0297	0.1289	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	0	0.1586	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND5--MT-ATP8	5	5	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5	8	0.67	0.56	0.0496	0.0496	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0.56	0.67	0.0992	FALSE	43	37	8	105	0	FALSE	ACH-000243
DANG_PANCREAS	RBKS--AC009411.1	6	1	RBKS	1842	chr2:28113124:-	AC009411.1	20343	chr2:21861410:-	ONLY_REF_SPLICE	YES	7	0	0.5	1	0.0595	0.0099	RBKS->chr2:28004231-28113965:-,ribokinase,AC009411.1->chr2:21861303-21872435:-	DANG_PANCREAS	0.5	1	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-CO2	6	0	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0595	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DANG_PANCREAS	1	1	0.0595	FALSE	59	21	0	114	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	4	8	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	14575	11723	0	0	0.0397	0.0793	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	0	0.119	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	5	4	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	13275	12092	0	0	0.0496	0.0397	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	0	0.0893	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	3	12	MT-ND4	1515	chrM:11274:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19515	254	0	0.06	0.0297	0.119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.06	0.1487	FALSE	231	217	16	283	0	FALSE	ACH-000243
DANG_PANCREAS	RP11-475J5.5--KRT6A	6	0	RP11-475J5.5	1398	chr5:99390352:-	KRT6A	5361	chr12:52887041:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0595	0	RP11-475J5.5->chr5:99389390-99390749:-,KRT6A->chr12:52880958-52887041:-,keratin_6A	DANG_PANCREAS	1	1	0.0595	TRUE	0	0	0	2	0	TRUE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-CO2	4	7	MT-ATP6	1516	chrM:9042:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	6	8	0.65	0.58	0.0397	0.0694	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DANG_PANCREAS	0.58	0.65	0.1091	FALSE	59	21	0	114	0	FALSE	ACH-000243
DANG_PANCREAS	RP11-96H19.1--RP11-446N19.1	2	15	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0.1487	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DANG_PANCREAS	1	1	0.1685	FALSE	192	492	57	212	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	3	10	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	15630	2093	0	0.01	0.0297	0.0992	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.01	0.1289	FALSE	231	217	16	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	5	2	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	14092	2005	0	0	0.0496	0.0198	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0	0.0694	FALSE	231	205	14	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND6--MT-TE	5	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0.0198	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DANG_PANCREAS	1	1	0.0694	FALSE	499	1288	110	792	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-CO2	4	5	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	101	8	0.08	0.53	0.0397	0.0496	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DANG_PANCREAS	0.08	0.53	0.0893	FALSE	59	21	0	114	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-CO2	3	9	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	56	4	0.18	0.75	0.0297	0.0892	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DANG_PANCREAS	0.18	0.75	0.1189	FALSE	59	21	0	114	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	3	9	MT-ATP6	1207	chrM:8733:+	MT-RNR2	5294	chrM:2283:+	INCL_NON_REF_SPLICE	YES	19386	11993	0	0	0.0297	0.0892	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	0	0.1189	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	5	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12188	254	0	0.02	0.0496	0.0099	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.02	0.0595	FALSE	230	198	14	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND5--MT-ATP8	4	5	MT-ND5	2687	chrM:14023:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	629	8	0.01	0.53	0.0397	0.0496	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0.01	0.53	0.0893	FALSE	43	37	8	105	0	FALSE	ACH-000243
DANG_PANCREAS	NRIP1--AF127936.7	5	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.43	1	0.0496	0.0099	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DANG_PANCREAS	0.43	1	0.0595	FALSE	125	705	46	456	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-CO2	4	4	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	51	4	0.14	0.67	0.0397	0.0397	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DANG_PANCREAS	0.14	0.67	0.0794	FALSE	59	21	0	114	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	3	8	MT-ATP6	1143	chrM:8669:+	MT-RNR2	5257	chrM:2246:+	INCL_NON_REF_SPLICE	YES	14414	11664	0	0	0.0297	0.0793	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	0	0.109	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1111	chrM:8637:+	MT-RNR2	5402	chrM:2391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	1	1	0.0496	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	3	8	MT-ATP6	1139	chrM:8665:+	MT-RNR2	4749	chrM:1738:+	INCL_NON_REF_SPLICE	YES	14272	1	0	0.92	0.0297	0.0793	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	0.92	0.109	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5387	chrM:2376:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	1	1	0.0496	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND5--MT-ATP8	4	4	MT-ND5	2662	chrM:13998:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1317	8	0.01	0.5	0.0397	0.0397	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0.01	0.5	0.0794	FALSE	43	37	8	105	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND5--MT-ATP8	4	4	MT-ND5	2404	chrM:13740:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	2543	0	0	1	0.0397	0.0397	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	1	0.0794	FALSE	43	37	8	105	0	FALSE	ACH-000243
DANG_PANCREAS	PPAPDC1B--WHSC1L1	3	7	PPAPDC1B	4103	chr8:38123659:-	WHSC1L1	13806	chr8:38205733:-	ONLY_REF_SPLICE	YES	225	278	0.04	0.03	0.0297	0.0694	LOCAL_REARRANGEMENT:-:[454],PPAPDC1B->chr8:38120648-38126761:-,WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-	DANG_PANCREAS	0.03	0.04	0.0991	TRUE	0	0	0	1	0	FALSE	ACH-000243
DANG_PANCREAS	C15orf57--CBX3	3	6	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	68	65	0.12	0.12	0.0297	0.0595	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DANG_PANCREAS	0.12	0.12	0.0892	TRUE	267	562	48	632	0	FALSE	ACH-000243
DANG_PANCREAS	C15orf57--CBX3	3	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	68	65	0.12	0.12	0.0297	0.0595	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DANG_PANCREAS	0.12	0.12	0.0892	TRUE	267	562	48	632	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-CO2	4	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	34	4	0.15	0.6	0.0397	0.0198	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DANG_PANCREAS	0.15	0.6	0.0595	FALSE	59	21	0	114	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND5--MT-ATP8	3	6	MT-ND5	2509	chrM:13845:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	2559	0	0	1	0.0297	0.0595	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	1	0.0892	FALSE	43	37	8	105	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND5--MT-ATP8	4	2	MT-ND5	2356	chrM:13692:+	MT-ATP8	5933	chrM:8486:+	INCL_NON_REF_SPLICE	YES	2672	988	0	0.01	0.0397	0.0198	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.01	0.0595	FALSE	43	37	8	105	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND6--MT-TE	4	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0.0198	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DANG_PANCREAS	1	1	0.0595	FALSE	499	1288	110	792	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-CO2	4	1	MT-ATP6	1138	chrM:8664:+	MT-CO2	4988	chrM:7892:+	INCL_NON_REF_SPLICE	YES	51	10	0.09	0.33	0.0397	0.0099	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DANG_PANCREAS	0.09	0.33	0.0496	FALSE	59	21	0	114	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	4	1	MT-ND4	1244	chrM:11003:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	12273	932	0	0.01	0.0397	0.0099	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.01	0.0496	FALSE	231	204	14	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	4	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12090	8	0	0.38	0.0397	0.0099	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.38	0.0496	FALSE	230	193	14	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND5--MT-ATP8	3	5	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5	254	0.62	0.03	0.0297	0.0496	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0.03	0.62	0.0793	FALSE	43	37	8	105	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND5--MT-ATP8	4	1	MT-ND5	1807	chrM:13143:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	2450	872	0	0.01	0.0397	0.0099	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.01	0.0496	FALSE	43	37	8	105	0	FALSE	ACH-000243
DANG_PANCREAS	AC002066.1--AC073130.1	2	8	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	24	0	0.29	1	0.0198	0.0793	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	DANG_PANCREAS	0.29	1	0.0991	FALSE	0	1	1	30	0	FALSE	ACH-000243
DANG_PANCREAS	AC002066.1--AC073130.1	2	8	AC002066.1	2203	chr7:116122867:-	AC073130.1	12073	chr7:115926249:-	ONLY_REF_SPLICE	YES	24	0	0.29	1	0.0198	0.0793	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	DANG_PANCREAS	0.29	1	0.0991	FALSE	0	0	0	2	0	FALSE	ACH-000243
DANG_PANCREAS	AC002066.1--AC073130.1	3	4	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	17	0	0.29	1	0.0297	0.0397	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	DANG_PANCREAS	0.29	1	0.0694	FALSE	0	3	0	33	0	FALSE	ACH-000243
DANG_PANCREAS	DPH6-AS1--RP11-684B21.1	4	0	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0397	0	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	DANG_PANCREAS	1	1	0.0397	TRUE	17	119	17	33	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND5--MT-ATP8	3	4	MT-ND5	2290	chrM:13626:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3373	0	0	1	0.0297	0.0397	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	1	0.0694	FALSE	43	37	8	105	0	FALSE	ACH-000243
DANG_PANCREAS	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DANG_PANCREAS	1	1	0.0397	TRUE	0	0	0	434	0	FALSE	ACH-000243
DANG_PANCREAS	NPM1P24--SET	4	0	NPM1P24	1533	chr10:74677760:-	SET	12301	chr9:131456196:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DANG_PANCREAS	1	1	0.0397	TRUE	0	0	0	434	0	FALSE	ACH-000243
DANG_PANCREAS	NUAK2--LINC00880	4	0	NUAK2	5167	chr1:205275316:-	LINC00880	15706	chr3:156801064:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0397	0	NUAK2->NUAK_family_kinase_2,chr1:205271187-205290883:-,LINC00880->chr3:156799456-156840793:-,long_intergenic_non-protein_coding_RNA_880	DANG_PANCREAS	1	1	0.0397	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	SCRN3--HYDIN	4	0	SCRN3	8341	chr2:175274953:+	HYDIN	52703	chr16:71025299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0397	0	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	DANG_PANCREAS	1	1	0.0397	TRUE	0	0	0	3	0	TRUE	ACH-000243
DANG_PANCREAS	TACC1--CTD-2024D23.1	3	4	TACC1	9302	chr8:38646337:+	CTD-2024D23.1	36038	chr8:39430763:+	ONLY_REF_SPLICE	YES	34	2	0.17	0.78	0.0297	0.0397	TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1,CTD-2024D23.1->chr8:39424224-39437653:+	DANG_PANCREAS	0.17	0.78	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1125	chrM:8651:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	13085	11663	0	0	0.0297	0.0297	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	0	0.0594	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1113	chrM:8639:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	13073	11991	0	0	0.0297	0.0297	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	0	0	0.0594	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	3	3	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	12357	0	0	1	0.0297	0.0297	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	1	0.0594	FALSE	231	204	14	283	0	FALSE	ACH-000243
DANG_PANCREAS	RP11-114H23.1--RP11-114H23.2	2	7	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	5	3	0.64	0.75	0.0198	0.0694	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	DANG_PANCREAS	0.64	0.75	0.0892	FALSE	81	155	12	160	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-CO2	3	2	MT-ATP6	1123	chrM:8649:+	MT-CO2	4811	chrM:7715:+	INCL_NON_REF_SPLICE	YES	38	3	0.12	0.62	0.0297	0.0198	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DANG_PANCREAS	0.12	0.62	0.0495	FALSE	59	21	0	114	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	6031	0	0	1	0.0297	0.0198	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	1	0.0495	FALSE	230	193	14	283	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND5--MT-ATP8	3	2	MT-ND5	2099	chrM:13435:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5972	254	0	0.02	0.0297	0.0198	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0.02	0.0495	FALSE	43	37	8	105	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND5--MT-ATP8	3	2	MT-ND5	2383	chrM:13719:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	2518	1046	0	0	0.0297	0.0198	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	0	0.0495	FALSE	43	37	8	105	0	FALSE	ACH-000243
DANG_PANCREAS	PROSC--CHMP1A	3	2	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	1663	600	0	0.01	0.0297	0.0198	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	DANG_PANCREAS	0	0.01	0.0495	FALSE	13	55	3	29	0	FALSE	ACH-000243
DANG_PANCREAS	PUM2--RBKS	1	10	PUM2	14055	chr2:20494137:-	RBKS	38108	chr2:28070964:-	ONLY_REF_SPLICE	NO	172	15	0.06	0.42	0.0099	0.0992	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,RBKS->chr2:28004231-28113965:-,ribokinase	DANG_PANCREAS	0.06	0.42	0.1091	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	TANC2--KRT20	3	2	TANC2	3326	chr17:61176718:+	KRT20	52068	chr17:39038906:-	ONLY_REF_SPLICE	YES	40	4	0.11	0.56	0.0297	0.0198	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,KRT20->chr17:39032193-39041479:-,keratin_20	DANG_PANCREAS	0.11	0.56	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-CO2	3	1	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	42	5	0.09	0.44	0.0297	0.0099	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DANG_PANCREAS	0.09	0.44	0.0396	FALSE	59	21	0	114	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND5--MT-ATP8	3	1	MT-ND5	1773	chrM:13109:+	MT-ATP8	5864	chrM:8417:+	INCL_NON_REF_SPLICE	YES	2334	0	0	1	0.0297	0.0099	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DANG_PANCREAS	0	1	0.0396	FALSE	43	37	8	105	0	FALSE	ACH-000243
DANG_PANCREAS	PLXNA1--MT-CO2	3	1	PLXNA1	22133	chr3:126748768:+	MT-CO2	32143	chrM:7655:+	INCL_NON_REF_SPLICE	YES	1243	0	0	1	0.0297	0.0099	PLXNA1->chr3:126707437-126756235:+,plexin_A1,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DANG_PANCREAS	0	1	0.0396	FALSE	0	0	0	1	0	FALSE	ACH-000243
DANG_PANCREAS	SULF2--MT-ND4L	3	1	SULF2	4653	chr20:46365584:-	MT-ND4L	28643	chrM:10485:+	INCL_NON_REF_SPLICE	NO	766	0	0.01	1	0.0297	0.0099	SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DANG_PANCREAS	0.01	1	0.0396	FALSE	0	0	0	1	0	FALSE	ACH-000243
DANG_PANCREAS	DOCK4--ZNF277	3	0	DOCK4	1310	chr7:111846157:-	ZNF277	64080	chr7:111926928:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:-:+:[177],DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,ZNF277->chr7:111846643-111983151:+,zinc_finger_protein_277	DANG_PANCREAS	1	1	0.0297	TRUE	0	3	0	1	2	TRUE	ACH-000243
DANG_PANCREAS	DOCK4--ZNF277	3	0	DOCK4	1310	chr7:111846157:-	ZNF277	69722	chr7:111967772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:-:+:[177],DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,ZNF277->chr7:111846643-111983151:+,zinc_finger_protein_277	DANG_PANCREAS	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	G6PD--GAB3	3	0	G6PD	2537	chrX:153774251:-	GAB3	12956	chrX:153944604:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	G6PD->chrX:153759606-153775787:-,glucose-6-phosphate_dehydrogenase,GAB3->GRB2_associated_binding_protein_3,chrX:153903529-153979858:-	DANG_PANCREAS	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1100	chrM:8626:+	MT-RNR2	5390	chrM:2379:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DANG_PANCREAS	1	1	0.0297	FALSE	63	17	1	58	0	FALSE	ACH-000243
DANG_PANCREAS	MT-ND4--MT-ND4L	3	0	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DANG_PANCREAS	1	1	0.0297	FALSE	344	821	44	306	0	FALSE	ACH-000243
DANG_PANCREAS	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DANG_PANCREAS	1	1	0.0297	TRUE	0	0	0	434	0	FALSE	ACH-000243
DANG_PANCREAS	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DANG_PANCREAS	1	1	0.0297	FALSE	292	1546	117	613	0	FALSE	ACH-000243
DANG_PANCREAS	SCRN3--HYDIN	3	0	SCRN3	8341	chr2:175274953:+	HYDIN	53782	chr16:71022415:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	SCRN3->chr2:175260458-175294303:+,secernin_3,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	DANG_PANCREAS	1	1	0.0297	TRUE	0	0	0	3	0	TRUE	ACH-000243
DANG_PANCREAS	TANC2--KRT20	2	2	TANC2	3215	chr17:61176607:+	KRT20	52068	chr17:39038906:-	ONLY_REF_SPLICE	YES	34	4	0.11	0.5	0.0198	0.0198	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,KRT20->chr17:39032193-39041479:-,keratin_20	DANG_PANCREAS	0.11	0.5	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	CAPZA2--CNPPD1	2	1	CAPZA2	3371	chr7:116502704:+	CNPPD1	26646	chr2:220041569:-	ONLY_REF_SPLICE	YES	319	70	0.01	0.04	0.0198	0.0099	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1	DANG_PANCREAS	0.01	0.04	0.0297	FALSE	0	0	0	1	0	FALSE	ACH-000243
DANG_PANCREAS	KAT6B--DDX50	1	5	KAT6B	5638	chr10:76603236:+	DDX50	33270	chr10:70666040:+	ONLY_REF_SPLICE	YES	8	321	0.43	0.02	0.0099	0.0496	{Klijn_CCL:Pancreas=1},KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B,DDX50->DEAD-box_helicase_50,chr10:70661034-70706603:+	DANG_PANCREAS	0.02	0.43	0.0595	TRUE	0	0	0	1	0	FALSE	ACH-000243
DANG_PANCREAS	MACROD1--MEN1	2	1	MACROD1	2512	chr11:63919764:-	MEN1	14271	chr11:64578377:-	ONLY_REF_SPLICE	YES	72	0	0.04	1	0.0198	0.0099	MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-,MEN1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:64570982-64578766:-,menin_1	DANG_PANCREAS	0.04	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	SAMD5--SASH1	2	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	7	21	0.3	0.12	0.0198	0.0099	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	DANG_PANCREAS	0.12	0.3	0.0297	TRUE	53	396	64	110	0	FALSE	ACH-000243
DANG_PANCREAS	AC002066.1--TES	2	0	AC002066.1	2203	chr7:116122867:-	TES	15085	chr7:115889074:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	NEIGHBORS_OVERLAP:-:+:[20523],AC002066.1->chr7:115878314-116139519:-,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	DANG_PANCREAS	1	1	0.0198	FALSE	0	0	0	2	0	FALSE	ACH-000243
DANG_PANCREAS	AC074389.9--C7orf50	2	0	AC074389.9	1083	chr7:1781845:-	C7orf50	7938	chr7:1167022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	AC074389.9->chr7:1778266-1781927:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	DANG_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	CIB1--PSMB1	2	0	CIB1	1379	chr15:90776901:-	PSMB1	10273	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CIB1->calcium_and_integrin_binding_1,chr15:90773207-90777279:-,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	DANG_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	HNRNPA2B1--TICAM2	2	0	HNRNPA2B1	9018	chr7:26232115:-	TICAM2	20532	chr5:114917012:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,TICAM2->chr5:114914339-114961876:-,toll_like_receptor_adaptor_molecule_2	DANG_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	MACROD1--MEN1	1	4	MACROD1	3565	chr11:63918711:-	MEN1	15044	chr11:64577604:-	ONLY_REF_SPLICE	NO	179	28	0.03	0.15	0.0099	0.0397	MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-,MEN1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:64570982-64578766:-,menin_1	DANG_PANCREAS	0.03	0.15	0.0496	TRUE	0	0	0	1	0	FALSE	ACH-000243
DANG_PANCREAS	PUM2--RBKS	2	0	PUM2	2307	chr2:20550358:-	RBKS	36975	chr2:28081438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,RBKS->chr2:28004231-28113965:-,ribokinase	DANG_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	RCC1--SKI	2	0	RCC1	2175	chr1:28834672:+	SKI	23186	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	DANG_PANCREAS	1	1	0.0198	TRUE	0	1	0	1	1	TRUE	ACH-000243
DANG_PANCREAS	SCARB1--UBC	2	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	DANG_PANCREAS	1	1	0.0198	TRUE	55	66	6	101	0	FALSE	ACH-000243
DANG_PANCREAS	TANGO6--CHTF8	2	0	TANGO6	21496	chr16:69008071:+	CHTF8	32064	chr16:69155396:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	LOCAL_INVERSION:+:-,chr16:[32830],TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog,CHTF8->chr16:69151913-69166487:-,chr16:69152757-69154331:-,chromosome_transmission_fidelity_factor_8	DANG_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	UBA6-AS1--BMP2K	2	0	UBA6-AS1	1205	chr4:68567202:+	BMP2K	40696	chr4:79831764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	UBA6-AS1->UBA6_antisense_RNA_1_(head_to_head),chr4:68566998-68946670:+,BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+	DANG_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000243
DANG_PANCREAS	YWHAZ--ZNF706	2	0	YWHAZ	2460	chr8:101964157:-	ZNF706	24352	chr8:102213971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx_FI:{Skin=[count:2=pct:0.6],Blood=[count:2=pct:1.1],Esophagus=[count:1=pct:0.2],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta,ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706	DANG_PANCREAS	1	1	0.0198	TRUE	5	5	0	7	0	FALSE	ACH-000243
DANG_PANCREAS	RPSAP52--HMGA2	1	3	RPSAP52	1132	chr12:66220623:-	HMGA2	10409	chr12:66232299:+	ONLY_REF_SPLICE	YES	18	684	0.18	0.01	0.0099	0.0297	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	DANG_PANCREAS	0.01	0.18	0.0396	FALSE	0	2	0	7	0	FALSE	ACH-000243
DANG_PANCREAS	ARPC5--DARS2	1	2	ARPC5	3118	chr1:183602217:-	DARS2	30040	chr1:173825804:+	ONLY_REF_SPLICE	YES	1002	138	0	0.02	0.0099	0.0198	ARPC5->actin_related_protein_2/3_complex_subunit_5,chr1:183592401-183604892:-,DARS2->aspartyl-tRNA_synthetase_2,_mitochondrial,chr1:173793641-173827684:+	DANG_PANCREAS	0	0.02	0.0297	FALSE	0	0	0	1	0	FALSE	ACH-000243
DANG_PANCREAS	SERTAD1--COPG1	1	2	SERTAD1	1159	chr19:40931774:-	COPG1	8191	chr3:128969525:+	ONLY_REF_SPLICE	YES	65	551	0.04	0.01	0.0099	0.0198	SERTAD1->SERTA_domain_containing_1,chr19:40927499-40931932:-,COPG1->chr3:128968449-128996614:+,coatomer_protein_complex_subunit_gamma_1	DANG_PANCREAS	0.01	0.04	0.0297	FALSE	0	0	0	1	0	FALSE	ACH-000243
DANG_PANCREAS	ACN9--SHFM1	1	1	ACN9	2308	chr7:96747209:+	SHFM1	15230	chr7:96324203:-	ONLY_REF_SPLICE	YES	521	1640	0	0	0.0099	0.0099	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ACN9->chr7:96745902-96811075:+,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	DANG_PANCREAS	0	0	0.0198	FALSE	0	0	0	3	0	FALSE	ACH-000243
DANG_PANCREAS	ASPH--COTL1	1	1	ASPH	8053	chr8:62593527:-	COTL1	52105	chr16:84623868:-	ONLY_REF_SPLICE	YES	1194	412	0	0	0.0099	0.0099	GTEx&tcga_normals:1/3694=0.03%,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	DANG_PANCREAS	0	0	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000243
DANG_PANCREAS	CTNNB1--PRKCA	1	1	CTNNB1	16512	chr3:41280845:+	PRKCA	46684	chr17:64799991:+	ONLY_REF_SPLICE	NO	459	98	0	0.02	0.0099	0.0099	CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha	DANG_PANCREAS	0	0.02	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000243
DANG_PANCREAS	EIF3H--RAD21	1	1	EIF3H	7051	chr8:117738255:-	RAD21	24431	chr8:117879000:-	ONLY_REF_SPLICE	NO	2438	60	0	0.03	0.0099	0.0099	LOCAL_REARRANGEMENT:-:[79010],EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-	DANG_PANCREAS	0	0.03	0.0198	FALSE	0	0	0	7	0	FALSE	ACH-000243
DANG_PANCREAS	EIF3H--RAD21	1	1	EIF3H	3765	chr8:117767905:-	RAD21	24431	chr8:117879000:-	ONLY_REF_SPLICE	YES	2135	60	0	0.03	0.0099	0.0099	LOCAL_REARRANGEMENT:-:[79010],EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-	DANG_PANCREAS	0	0.03	0.0198	FALSE	0	0	0	3	0	FALSE	ACH-000243
DANG_PANCREAS	HIF1A--PRKCH	1	1	HIF1A	1327	chr14:62162557:+	PRKCH	48659	chr14:61952220:+	ONLY_REF_SPLICE	YES	350	203	0.01	0.01	0.0099	0.0099	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	DANG_PANCREAS	0.01	0.01	0.0198	FALSE	1	15	1	9	1	FALSE	ACH-000243
DANG_PANCREAS	KIAA1217--CDC42BPA	1	1	KIAA1217	7629	chr10:24528266:+	CDC42BPA	81668	chr1:227192812:-	ONLY_REF_SPLICE	YES	15	51	0.12	0.04	0.0099	0.0099	KIAA1217->KIAA1217,chr10:23983675-24836772:+,CDC42BPA->CDC42_binding_protein_kinase_alpha,chr1:227177566-227506175:-	DANG_PANCREAS	0.04	0.12	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000243
DANG_PANCREAS	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	94	1	0.02	0.0099	0.0099	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DANG_PANCREAS	0.02	1	0.0198	TRUE	64	13	3	59	0	FALSE	ACH-000243
DANG_PANCREAS	TES--CAPZA2	1	1	TES	1242	chr7:115850788:+	CAPZA2	19782	chr7:116528181:+	ONLY_REF_SPLICE	YES	1182	648	0	0	0.0099	0.0099	TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+	DANG_PANCREAS	0	0	0.0198	FALSE	0	0	0	2	0	FALSE	ACH-000243
DANG_PANCREAS	ZIC5--PCCA	1	1	ZIC5	2783	chr13:100622381:-	PCCA	32312	chr13:100982815:+	ONLY_REF_SPLICE	NO	21	60	0.09	0.03	0.0099	0.0099	ZIC5->Zic_family_member_5,chr13:100615218-100624163:-,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	DANG_PANCREAS	0.03	0.09	0.0198	TRUE	0	0	0	2	0	FALSE	ACH-000243
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	133	15	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6474	0.1858	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.8332	FALSE	462	80	0	856	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	76	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	3	0	0.96	1	0.9414	0.0124	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.9538	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	53	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	7	0	0.91	1	0.6565	0.1982	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.8547	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	125	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	31	0	0.81	1	0.0991	1.5483	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	1.6474	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	130	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	69	0	0.66	1	0.0743	1.6102	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	1	1.6845	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	124	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	30	0	0.81	1	0.0743	1.5359	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	1.6102	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	127	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	46	0	0.74	1	0.0619	1.5731	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	1.635	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	36	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.4459	0.0248	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.4707	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	127	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	39	0	0.77	1	0.0495	1.5731	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	1.6226	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	127	MT-ND4	1159	chrM:10918:+	MT-ND4L	5503	chrM:10594:+	INCL_NON_REF_SPLICE	YES	52	0	0.71	1	0.0372	1.5731	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	1.6103	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	11	88	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	16	0	0.86	1	0.1363	1.09	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	1.2263	FALSE	344	821	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	104	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	19	0	0.85	1	0.0867	1.2882	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	1.3749	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	116	MT-ND4	1093	chrM:10852:+	MT-ND4L	5529	chrM:10620:+	INCL_NON_REF_SPLICE	YES	19	0	0.86	1	0.0372	1.4368	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	1.474	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	28	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.3468	0.1363	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.4831	TRUE	508	994	45	981	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	83	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	194	0	0.31	1	0.0619	1.0281	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	1	1.09	FALSE	344	827	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	87	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	31	0	0.74	1	0.0372	1.0776	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	1.1148	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	85	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	31	0	0.74	1	0.0372	1.0528	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	1.09	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	81	MT-ND4	1062	chrM:10821:+	MT-ND4L	5516	chrM:10607:+	INCL_NON_REF_SPLICE	NO	13	0	0.87	1	0.0495	1.0033	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	1.0528	FALSE	344	821	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	11	48	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	6	17	0.91	0.78	0.1363	0.5945	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.91	0.7308	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	61	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	8	0	0.89	1	0.0495	0.7556	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.8051	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CYFIP2--PLCG2	18	4	CYFIP2	40402	chr5:156816435:+	PLCG2	60611	chr16:81902819:+	ONLY_REF_SPLICE	YES	35	9	0.39	0.71	0.223	0.0495	{Klijn_CCL:Lymphoid=1},CYFIP2->chr5:156693089-156822606:+,cytoplasmic_FMR1_interacting_protein_2,PLCG2->ArcherDX_panel,FoundationOne_panel,chr16:81772702-81991899:+,phospholipase_C_gamma_2	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.71	0.2725	TRUE	0	0	0	2	0	TRUE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	49	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	15	17	0.79	0.76	0.0743	0.6069	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.79	0.6812	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	60	MT-ND4	1231	chrM:10990:+	MT-ND4L	5632	chrM:10723:+	INCL_NON_REF_SPLICE	YES	76	0	0.45	1	0.0372	0.7432	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	1	0.7804	FALSE	344	827	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	14	16	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1734	0.1982	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3716	FALSE	462	80	0	856	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	18	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.223	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.223	TRUE	519	3926	326	965	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	48	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	15	16	0.78	0.77	0.0619	0.5945	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.78	0.6564	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	17	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2106	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2106	TRUE	0	0	0	434	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	53	MT-CO3	1138	chrM:9344:+	MT-ATP6	4905	chrM:8647:+	INCL_NON_REF_SPLICE	YES	6	33	0.9	0.63	0.0372	0.6565	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.9	0.6937	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	48	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	6	105	0.9	0.33	0.0495	0.5945	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.9	0.644	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	48	MT-CO3	1153	chrM:9359:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	10	11	0.84	0.83	0.0495	0.5945	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.84	0.644	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	49	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	6	17	0.9	0.75	0.0372	0.6069	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.9	0.6441	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	30	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	60	0	0.38	1	0.0867	0.3716	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.4583	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.1363	0.161	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.2973	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	43	MT-CO3	1072	chrM:9278:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	1	63	0.98	0.42	0.0372	0.5326	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.98	0.5698	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	12	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	209	47	0.08	0.28	0.1486	0.0743	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.28	0.2229	FALSE	59	21	0	114	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	13	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	8	1	0.65	0.94	0.161	0.0248	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.94	0.1858	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	38	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.0495	0.4707	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.5202	FALSE	344	821	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	22	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	7	0	0.81	1	0.0991	0.2725	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.3716	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	21	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	63	0	0.32	1	0.0991	0.2601	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.3592	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	11	8	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	153	0	0.11	1	0.1363	0.0991	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.2354	FALSE	344	827	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	12	3	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	10	1	0.6	0.94	0.1486	0.0372	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.94	0.1858	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	34	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	2115	0	0.02	1	0.0495	0.4211	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.4706	FALSE	344	827	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	10	8	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	153	0	0.11	1	0.1239	0.0991	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.223	FALSE	344	827	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	11	3	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	6	2	0.7	0.88	0.1363	0.0372	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.88	0.1735	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	10	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	209	43	0.07	0.27	0.1239	0.0743	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.27	0.1982	FALSE	59	21	0	114	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	30	MT-ND4	1144	chrM:10903:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	39	0	0.47	1	0.0495	0.3716	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.4211	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	10	2	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	10	1	0.55	0.92	0.1239	0.0248	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.92	0.1487	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	22	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	7	0	0.79	1	0.0619	0.2725	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	0.3344	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	21	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	69	0	0.27	1	0.0619	0.2601	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.322	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	16	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0.1982	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2725	FALSE	462	80	0	856	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	10	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1239	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1239	TRUE	0	0	0	518	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	19	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	55	0	0.3	1	0.0619	0.2353	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.2972	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	14	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	65	0	0.24	1	0.0743	0.1734	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.2477	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	18	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	5	0	0.82	1	0.0619	0.223	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.2849	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	18	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0.223	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2849	FALSE	462	80	0	856	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	25	MT-CO3	1038	chrM:9244:+	MT-ATP6	5188	chrM:8930:+	INCL_NON_REF_SPLICE	YES	2	134	0.93	0.17	0.0372	0.3097	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.93	0.3469	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	25	MT-ND6	1118	chrM:14556:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.0372	0.3097	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.3469	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	3	24	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	7020	1	0	0.0372	0.2973	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3345	FALSE	26	124	4	93	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	16	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0619	0.1982	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2601	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	20	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	7	0	0.77	1	0.0495	0.2477	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.2972	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	14	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	6	4	0.76	0.83	0.0619	0.1734	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.83	0.2353	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	18	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.0495	0.223	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.2725	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	21	MT-CO3	1020	chrM:9226:+	MT-ATP6	5076	chrM:8818:+	INCL_NON_REF_SPLICE	YES	1	44	0.96	0.35	0.0372	0.2601	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.96	0.2973	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	21	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	64	0	0.27	1	0.0372	0.2601	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.2973	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPO--MT-CO3	7	4	MPO	9226	chr17:56348133:-	MT-CO3	13501	chrM:9565:+	INCL_NON_REF_SPLICE	YES	14403	24574	0	0	0.0867	0.0495	MPO->chr17:56347217-56358296:-,myeloperoxidase,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1362	FALSE	0	0	0	3	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	8	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0991	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0991	FALSE	183	104	9	328	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	7	4	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3964	35310	0	0	0.0867	0.0495	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1362	FALSE	183	104	9	328	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	5	12	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	251	49	0.06	0.26	0.0619	0.1486	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.26	0.2105	FALSE	59	21	0	114	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	20	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	1	16	0.96	0.59	0.0372	0.2477	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	0.96	0.2849	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0991	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0991	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRG2--MT-CO1	6	8	PRG2	2419	chr11:57156712:-	MT-CO1	8537	chrM:6576:+	INCL_NON_REF_SPLICE	YES	7088	35625	0	0	0.0743	0.0991	PRG2->chr11:57154267-57158130:-,proteoglycan_2,_bone_marrow_(natural_killer_cell_activator,_eosinophil_granule_major_basic_protein),MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1734	FALSE	0	0	0	1	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	1	MT-TA	1022	chrM:5634:-	MT-TC	4114	chrM:5782:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0867	0.0124	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0991	FALSE	462	80	0	856	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	9	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0.1115	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1734	FALSE	462	80	0	856	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANPEP--MT-ND4L	6	0	ANPEP	16060	chr15:90328379:-	MT-ND4L	19321	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0743	FALSE	0	1	0	16	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0743	FALSE	183	104	9	328	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0743	FALSE	183	104	9	328	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0743	FALSE	183	104	9	328	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0743	FALSE	344	821	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	11	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	3	3	0.82	0.82	0.0372	0.1363	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.82	0.1735	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	7	MT-ND6	1271	chrM:14403:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	3	0	0.79	1	0.0495	0.0867	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	0.1362	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	7	MT-ND6	1115	chrM:14559:-	MT-TE	4584	chrM:14684:-	INCL_NON_REF_SPLICE	YES	4	0	0.73	1	0.0495	0.0867	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	0.1362	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	2	MT-CO3	1181	chrM:9387:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	10	1	0.41	0.88	0.0619	0.0248	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.88	0.0867	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	6	2	0.62	0.83	0.0495	0.0743	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.83	0.1238	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	6	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	17	1	0.37	0.0495	0.0743	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	1	0.1238	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	6	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	75	0	0.12	1	0.0495	0.0743	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.1238	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	6	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	69	0	0.13	1	0.0495	0.0743	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.1238	FALSE	344	826	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	4	4	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	114	41	0.07	0.16	0.0495	0.0495	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.16	0.099	FALSE	59	21	0	114	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	5	0	MT-ATP6	1098	chrM:8624:+	MT-CO2	5182	chrM:8086:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0619	FALSE	59	21	0	114	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0619	FALSE	351	233	23	137	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	7	MT-ND6	1111	chrM:14563:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	5	0	0.67	1	0.0372	0.0867	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.1239	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	3	5	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	194	39	0.04	0.17	0.0372	0.0619	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.17	0.0991	FALSE	59	21	0	114	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0.0124	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0619	FALSE	344	821	44	306	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0495	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	3	MT-CO3	1173	chrM:9379:+	MT-ATP6	5450	chrM:9192:+	INCL_NON_REF_SPLICE	YES	10	1	0.38	0.86	0.0372	0.0372	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.86	0.0744	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1516	chrM:9042:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	NO	7493	35310	0	0	0.0372	0.0124	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0496	FALSE	183	104	9	328	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1286	chrM:8812:+	MT-CO1	5225	chrM:6447:+	INCL_NON_REF_SPLICE	YES	23738	32291	0	0	0.0372	0.0124	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0496	FALSE	183	104	9	328	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	1	MT-CO3	1158	chrM:9364:+	MT-ATP6	5461	chrM:9203:+	INCL_NON_REF_SPLICE	YES	10	0	0.29	1	0.0372	0.0124	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.0496	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	1	MT-TA	1022	chrM:5634:-	MT-TC	4077	chrM:5819:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0.0124	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0496	FALSE	462	80	0	856	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	FALSE	189	492	56	216	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	FALSE	499	1288	110	792	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AQR--SIRT1	2	0	AQR	6990	chr15:35236489:-	SIRT1	55257	chr10:69672231:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	AQR->aquarius_intron-binding_spliceosomal_factor,chr15:35147732-35262040:-,SIRT1->Oncogene{Bushman},chr10:69644427-69678147:+,sirtuin_1	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARL8B--HMGB1	2	0	ARL8B	3548	chr3:5212241:+	HMGB1	17914	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	ARL8B->ADP_ribosylation_factor_like_GTPase_8B,chr3:5163905-5222596:+,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNTRL--HNRNPDL	2	0	CNTRL	33697	chr9:123919878:+	HNRNPDL	57066	chr4:83346036:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	CNTRL->Oncogene{Bushman},centriolin,chr9:123837141-123939888:+,HNRNPDL->chr4:83343717-83351294:-,heterogeneous_nuclear_ribonucleoprotein_D_like	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--SRSF1	2	0	CPSF6	11046	chr12:69656342:+	SRSF1	22199	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	2	7	0	12	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--ZNF331	2	0	FAM208B	1338	chr10:5727138:+	ZNF331	41120	chr19:54042470:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FYB--METTL14	2	0	FYB	2386	chr5:39270671:-	METTL14	40243	chr4:119618337:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	FYB->FYN_binding_protein,chr5:39105338-39274630:-,METTL14->chr4:119606523-119636588:+,methyltransferase_like_14	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INPP5D--RUVBL1	2	0	INPP5D	29465	chr2:234107022:+	RUVBL1	47869	chr3:127806651:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	INPP5D->chr2:233924677-234116549:+,inositol_polyphosphate-5-phosphatase_D,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGST1--RPL41	2	0	MGST1	5873	chr12:16507204:+	RPL41	24688	chr12:56510559:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,RPL41->chr12:56510370-56511727:+,ribosomal_protein_L41	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSTPIP2--PHF14	2	0	PSTPIP2	2458	chr18:43619913:-	PHF14	45431	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	PSTPIP2->chr18:43563502-43652238:-,proline-serine-threonine_phosphatase_interacting_protein_2,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARRDC2--UBA52	1	2	ARRDC2	1442	chr19:18112382:+	UBA52	12744	chr19:18684103:+	ONLY_REF_SPLICE	NO	8	108	0.27	0.03	0.0124	0.0248	ARRDC2->arrestin_domain_containing_2,chr19:18111941-18124911:+,UBA52->chr19:18682540-18688360:+,ubiquitin_A-52_residue_ribosomal_protein_fusion_product_1	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.27	0.0372	TRUE	0	0	0	1	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	1	2	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	NO	52	128	0.05	0.02	0.0124	0.0248	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.0372	TRUE	3	48	0	26	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MRPL1--MYC	1	1	MRPL1	10449	chr4:78830526:+	MYC	18024	chr8:128750494:+	ONLY_REF_SPLICE	YES	212	617	0.01	0	0.0124	0.0124	MRPL1->chr4:78783674-78873944:+,mitochondrial_ribosomal_protein_L1,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MRPL1--MYC	1	1	MRPL1	10449	chr4:78830526:+	MYC	18027	chr8:128750497:+	ONLY_REF_SPLICE	YES	212	593	0.01	0	0.0124	0.0124	MRPL1->chr4:78783674-78873944:+,mitochondrial_ribosomal_protein_L1,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--PPP1R12C	1	1	OAZ1	1259	chr19:2269743:+	PPP1R12C	17683	chr19:55607703:-	ONLY_REF_SPLICE	YES	2811	130	0	0.02	0.0124	0.0124	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Breast=[count:4=pct:3.6],Lung=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Colon=[count:3=pct:1.6],Adipose_Tissue=[count:2=pct:0.7],Esophagus=[count:2=pct:0.5],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Nerve=[count:1=pct:0.6],Thyroid=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Liver=[count:1=pct:0.8]},GTEx_v2:{count=34;pct=0.39%;dist=Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=5,Artery_-_Tibial=4,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Esophagus_-_Muscularis=2,Colon_-_Sigmoid=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Breast_-_Mammary_Tissue=1,Minor_Salivary_Gland=1,Liver=1,Thyroid=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Cells_-_Transformed_fibroblasts=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0248	FALSE	23	0	0	3	0	FALSE	ACH-000002
HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UCHL5--TXNDC15	1	1	UCHL5	4093	chr1:193018876:-	TXNDC15	26348	chr5:134229182:+	ONLY_REF_SPLICE	YES	47	23	0.04	0.08	0.0124	0.0124	UCHL5->Oncogene{Bushman},chr1:192981380-193029237:-,ubiquitin_C-terminal_hydrolase_L5,TXNDC15->chr5:134209493-134237215:+,thioredoxin_domain_containing_15	HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.08	0.0248	TRUE	0	0	0	1	0	FALSE	ACH-000002
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV12-2--TRAJ22	1303	18	TRAV12-2	1641	chr14:22356677:+	TRAJ22	4645	chr14:22991014:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	15.8315	0.2187	HGNC_GENEFAM,TRAV12-2->T_cell_receptor_alpha_variable_12-2,chr14:22356037-22356682:+,TRAJ22->T_cell_receptor_alpha_joining_22,chr14:22991016-22991078:+	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	16.0502	TRUE	0	0	0	1	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV12-2--TRAJ3	402	34	TRAV12-2	1650	chr14:22356686:+	TRAJ3	4656	chr14:23012131:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	4.8843	0.4131	HGNC_GENEFAM,TRAV12-2->T_cell_receptor_alpha_variable_12-2,chr14:22356037-22356682:+,TRAJ3->T_cell_receptor_alpha_joining_3,chr14:23012122-23012183:+	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	5.2974	TRUE	1	0	0	1	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	54	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6561	0.1944	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8505	TRUE	508	994	45	981	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	44	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5346	0.0729	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6075	FALSE	462	80	0	856	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM9B--HCLS1	43	0	TMEM9B	1652	chr11:8985907:-	HCLS1	26041	chr3:121351323:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5225	0	TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-,HCLS1->chr3:121350246-121379774:-,hematopoietic_cell-specific_Lyn_substrate_1	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5225	TRUE	1	0	0	2	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	36	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	199	12	0.16	0.76	0.4374	0.0122	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.76	0.4496	TRUE	519	3926	326	965	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	31	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3767	0.0243	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.401	FALSE	499	1288	110	792	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV12-2--TRAJ22	23	18	TRAV12-2	1641	chr14:22356677:+	TRAJ22	4644	chr14:22991013:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2795	0.2187	HGNC_GENEFAM,TRAV12-2->T_cell_receptor_alpha_variable_12-2,chr14:22356037-22356682:+,TRAJ22->T_cell_receptor_alpha_joining_22,chr14:22991016-22991078:+	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4982	TRUE	0	0	0	1	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	25	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3038	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3038	TRUE	0	0	0	518	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	24	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2916	0.0243	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3159	FALSE	499	1288	110	792	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV12-2--TRAJ22	20	18	TRAV12-2	1639	chr14:22356675:+	TRAJ22	4644	chr14:22991013:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.243	0.2187	HGNC_GENEFAM,TRAV12-2->T_cell_receptor_alpha_variable_12-2,chr14:22356037-22356682:+,TRAJ22->T_cell_receptor_alpha_joining_22,chr14:22991016-22991078:+	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4617	TRUE	0	0	0	1	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	82	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	21	0	0.8	1	0.0365	0.9963	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	1.0328	FALSE	344	826	44	306	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	66	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	6	0	0.92	1	0.0486	0.8019	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.8505	FALSE	344	826	44	306	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUZ12P--CRLF3	17	12	SUZ12P	11951	chr17:29096983:+	CRLF3	35192	chr17:29101362:-	ONLY_REF_SPLICE	YES	11	0	0.72	1	0.2066	0.1458	NEIGHBORS_OVERLAP:+:-:[21520],SUZ12P->chr17:29036317-29117926:+,CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	1	0.3524	FALSE	11	30	1	7	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	14	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1701	0.158	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.3281	FALSE	499	1288	110	792	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	56	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	8	0	0.88	1	0.0365	0.6804	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.7169	FALSE	344	826	44	306	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	52	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	0	0.9	1	0.0486	0.6318	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.6804	FALSE	344	821	44	306	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUZ12P--CRLF3	17	0	SUZ12P	11951	chr17:29096983:+	CRLF3	36039	chr17:29100515:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2066	0	NEIGHBORS_OVERLAP:+:-:[21520],SUZ12P->chr17:29036317-29117926:+,CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2066	FALSE	11	30	1	7	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM9B--HCLS1	15	0	TMEM9B	1656	chr11:8985903:-	HCLS1	26033	chr3:121351331:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1823	0	TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-,HCLS1->chr3:121350246-121379774:-,hematopoietic_cell-specific_Lyn_substrate_1	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1823	TRUE	1	0	0	2	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	9	23	AC104820.2	16783	chr2:182227645:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	8	277	0.8	0.1	0.1094	0.2795	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.8	0.3889	FALSE	0	0	0	16	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	10	10	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	8	319	0.71	0.06	0.1215	0.1215	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.71	0.243	FALSE	0	0	0	19	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--B2M	12	2	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	3955	0	0	1	0.1458	0.0243	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1701	TRUE	0	0	0	28	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	9	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	89	20	0.19	0.51	0.1094	0.1458	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.51	0.2552	TRUE	267	562	48	632	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	35	MT-ND4	1050	chrM:10809:+	MT-ND4L	5523	chrM:10614:+	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.0365	0.4253	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.4618	FALSE	344	821	44	306	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	11	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2495	0	0	1	0.1337	0.0122	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1459	FALSE	13	9	0	364	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HCLS1--TMEM9B	11	0	HCLS1	15346	chr3:121351299:-	TMEM9B	20017	chr11:8985941:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1337	0	HCLS1->chr3:121350246-121379774:-,hematopoietic_cell-specific_Lyn_substrate_1,TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1337	TRUE	0	0	0	1	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	26	MT-ND4	1039	chrM:10798:+	MT-ND4L	5496	chrM:10587:+	INCL_NON_REF_SPLICE	YES	5	0	0.86	1	0.0486	0.3159	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.3645	FALSE	344	821	44	306	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	8	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0972	0.0851	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1823	FALSE	462	80	0	856	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	22	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	4	0.96	0.87	0.0486	0.2673	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	0.96	0.3159	FALSE	189	492	56	216	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	7	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	54	0	0.21	1	0.0851	0.0851	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.1702	FALSE	344	827	44	306	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	6	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	86	20	0.16	0.44	0.0729	0.1215	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.44	0.1944	TRUE	267	562	48	632	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	22	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0365	0.2673	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.3038	FALSE	344	821	44	306	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHSY3--HSPA8P4	7	3	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	22	0	0.31	1	0.0851	0.0365	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	1	0.1216	FALSE	89	26	1	44	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-316P17.2--RP5-1050E16.2	5	5	RP11-316P17.2	1338	chr9:92316903:+	RP5-1050E16.2	8236	chr9:92522698:+	ONLY_REF_SPLICE	YES	156	0	0.06	1	0.0608	0.0608	GTEx_FI:{Lung=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},RP11-316P17.2->chr9:92316566-92334585:+,RP5-1050E16.2->chr9:92501142-92523200:+	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.1216	TRUE	2	7	0	5	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0.0972	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1458	FALSE	499	1288	110	792	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0729	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0729	FALSE	462	80	0	856	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	7	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0.0851	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1337	FALSE	189	492	56	216	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	5	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2493	0	0	1	0.0608	0.0122	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.073	FALSE	13	9	0	364	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0.0243	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0729	FALSE	344	821	44	306	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	4	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0.0243	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0729	TRUE	477	1352	189	275	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0486	FALSE	189	492	56	216	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HCLS1--TMEM9B	3	0	HCLS1	15349	chr3:121351296:-	TMEM9B	20008	chr11:8985950:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	HCLS1->chr3:121350246-121379774:-,hematopoietic_cell-specific_Lyn_substrate_1,TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0365	FALSE	499	1288	110	792	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0365	FALSE	499	1288	110	792	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP1-34H18.1--NAV3	3	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0365	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0365	TRUE	254	575	65	124	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-316P17.2--RP5-1050E16.2	1	6	RP11-316P17.2	1338	chr9:92316903:+	RP5-1050E16.2	7077	chr9:92504501:+	ONLY_REF_SPLICE	YES	156	0	0.04	1	0.0122	0.0729	GTEx_FI:{Lung=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},RP11-316P17.2->chr9:92316566-92334585:+,RP5-1050E16.2->chr9:92501142-92523200:+	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0851	TRUE	0	0	0	1	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL2RA--SET	2	1	IL2RA	1238	chr10:6104051:-	SET	18206	chr9:131453449:+	ONLY_REF_SPLICE	YES	2264	334	0	0.01	0.0243	0.0122	IL2RA->Oncogene{Bushman},chr10:6052652-6104288:-,interleukin_2_receptor_subunit_alpha,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0365	FALSE	0	0	0	2	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AMMECR1--ACSL4	2	0	AMMECR1	6630	chrX:109507717:-	ACSL4	36899	chrX:108887415:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	AMMECR1->Alport_syndrome,_mental_retardation,_midface_hypoplasia_and_elliptocytosis_chromosomal_region_gene_1,chrX:109437414-109683461:-,ACSL4->acyl-CoA_synthetase_long-chain_family_member_4,chrX:108867473-108976632:-	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STRN4--MAPK14	2	0	STRN4	13332	chr19:47230709:-	MAPK14	29385	chr6:36041826:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	STRN4->chr19:47222764-47250251:-,striatin_4,MAPK14->Oncogene{Bushman},chr6:35995488-36079013:+,mitogen-activated_protein_kinase_14	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	3	AC104820.2	8902	chr2:182127704:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	NO	51	319	0.07	0.01	0.0122	0.0365	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.07	0.0487	FALSE	0	0	0	11	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	2	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	NO	34	319	0.08	0.01	0.0122	0.0243	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.08	0.0365	FALSE	0	1	0	18	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0122	0.0243	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0365	TRUE	274	363	69	150	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0122	0.0243	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0365	TRUE	160	277	29	98	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BZRAP1-AS1--MGAT1	1	1	BZRAP1-AS1	6576	chr17:56416808:+	MGAT1	19133	chr5:180236076:-	ONLY_REF_SPLICE	YES	85	44	0.02	0.04	0.0122	0.0122	BZRAP1-AS1->BZRAP1_antisense_RNA_1,chr17:56402811-56493127:+,MGAT1->chr5:180217541-180242652:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,2-N-acetylglucosaminyltransferase	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0244	TRUE	0	0	0	1	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf53--RP11-265N7.2	1	1	C15orf53	1142	chr15:38988940:+	RP11-265N7.2	10113	chr15:39465180:+	ONLY_REF_SPLICE	YES	9	0	0.18	1	0.0122	0.0122	C15orf53->chr15:38988799-38992239:+,chromosome_15_open_reading_frame_53,RP11-265N7.2->chr15:39459940-39472231:+	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.0244	TRUE	1	0	0	1	0	TRUE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGFR1OP2--MRPS35	1	1	FGFR1OP2	1328	chr12:27091643:+	MRPS35	22183	chr12:27888380:+	ONLY_REF_SPLICE	YES	132	159	0.01	0.01	0.0122	0.0122	FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,MRPS35->chr12:27863706-27909228:+,mitochondrial_ribosomal_protein_S35	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-689B22.2--NCKAP1L	1	1	RP11-689B22.2	3762	chr12:109030231:+	NCKAP1L	12362	chr12:54901637:+	ONLY_REF_SPLICE	YES	12	186	0.14	0.01	0.0122	0.0122	RP11-689B22.2->chr12:109022463-109035094:+,NCKAP1L->NCK_associated_protein_1_like,chr12:54891495-54937726:+	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.14	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDCBP2-AS1--IL6ST	1	1	SDCBP2-AS1	1378	chr20:1306426:+	IL6ST	19884	chr5:55260140:-	ONLY_REF_SPLICE	YES	2	387	0.5	0.01	0.0122	0.0122	SDCBP2-AS1->SDCBP2_antisense_RNA_1,chr20:1306049-1359378:+,IL6ST->Oncogene{Bushman},chr5:55230923-55290821:-,interleukin_6_signal_transducer	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.5	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEC11C--XPO1	1	1	SEC11C	1559	chr18:56807267:+	XPO1	17823	chr2:61761038:-	ONLY_REF_SPLICE	NO	696	275	0	0.01	0.0122	0.0122	SEC11C->SEC11_homolog_C,_signal_peptidase_complex_subunit,chr18:56806709-56826068:+,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000612
HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TPRG1--TP63	1	1	TPRG1	26929	chr3:189028328:+	TP63	39094	chr3:189455529:+	ONLY_REF_SPLICE	YES	487	61	0	0.03	0.0122	0.0122	TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1,TP63->chr3:189349205-189615068:+,tumor_protein_p63	HUT102_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000612
SNUC4_LARGE_INTESTINE	TIMM23B--LINC00843	34	10	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.96	0.3862	0.1136	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNUC4_LARGE_INTESTINE	0.96	1	0.4998	TRUE	508	994	45	981	0	FALSE	ACH-000959
SNUC4_LARGE_INTESTINE	MT-TA--MT-TC	30	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3408	0.0341	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNUC4_LARGE_INTESTINE	1	1	0.3749	FALSE	462	80	0	856	0	FALSE	ACH-000959
SNUC4_LARGE_INTESTINE	OR51S1--TP53I11	23	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2613	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNUC4_LARGE_INTESTINE	1	1	0.2613	TRUE	402	216	10	229	0	FALSE	ACH-000959
SNUC4_LARGE_INTESTINE	TIMM23--RP11-464F9.1	15	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	89	2	0.15	0.89	0.1704	0.0114	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNUC4_LARGE_INTESTINE	0.15	0.89	0.1818	TRUE	519	3926	326	965	0	FALSE	ACH-000959
SNUC4_LARGE_INTESTINE	TTC6--MIPOL1	13	7	TTC6	2242	chr14:38075947:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	YES	3	4	0.87	0.83	0.1477	0.0795	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	SNUC4_LARGE_INTESTINE	0.83	0.87	0.2272	TRUE	0	13	0	3	11	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	LINC00511--SLC39A11	10	3	LINC00511	8867	chr17:70588342:-	SLC39A11	49102	chr17:70732858:-	ONLY_REF_SPLICE	YES	25	15	0.34	0.46	0.1136	0.0341	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	SNUC4_LARGE_INTESTINE	0.34	0.46	0.1477	TRUE	0	5	0	7	4	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	MECOM--LRRC31	6	2	MECOM	1283	chr3:169381124:-	LRRC31	35633	chr3:169587660:-	INCL_NON_REF_SPLICE	YES	14	0	0.36	1	0.0682	0.0227	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,LRRC31->chr3:169556967-169587718:-,leucine_rich_repeat_containing_31	SNUC4_LARGE_INTESTINE	0.36	1	0.0909	TRUE	0	4	0	2	4	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	IMPACT--CABYR	5	5	IMPACT	4369	chr18:22010348:+	CABYR	24492	chr18:21735665:+	ONLY_REF_SPLICE	YES	21	0	0.32	1	0.0568	0.0568	IMPACT->chr18:22006580-22033499:+,impact_RWD_domain_protein,CABYR->calcium_binding_tyrosine_phosphorylation_regulated,chr18:21718942-21741567:+	SNUC4_LARGE_INTESTINE	0.32	1	0.1136	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	22	1	0.24	0.0682	0.0114	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNUC4_LARGE_INTESTINE	0.24	1	0.0796	TRUE	465	1949	224	605	0	FALSE	ACH-000959
SNUC4_LARGE_INTESTINE	LBR--HNRNPA1	5	0	LBR	10539	chr1:225600156:-	HNRNPA1	22768	chr12:54675579:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0568	0	LBR->chr1:225589204-225616627:-,lamin_B_receptor,HNRNPA1->chr12:54673977-54680872:+,heterogeneous_nuclear_ribonucleoprotein_A1	SNUC4_LARGE_INTESTINE	1	1	0.0568	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	C15orf57--CBX3	4	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	30	19	0.19	0.27	0.0454	0.0341	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNUC4_LARGE_INTESTINE	0.19	0.27	0.0795	TRUE	267	562	48	632	0	FALSE	ACH-000959
SNUC4_LARGE_INTESTINE	C15orf57--CBX3	4	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	29	19	0.17	0.24	0.0454	0.0227	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNUC4_LARGE_INTESTINE	0.17	0.24	0.0681	TRUE	267	562	48	632	0	FALSE	ACH-000959
SNUC4_LARGE_INTESTINE	TTC6--MIPOL1	3	5	TTC6	1162	chr14:38065213:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	YES	3	4	0.73	0.67	0.0341	0.0568	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	SNUC4_LARGE_INTESTINE	0.67	0.73	0.0909	TRUE	0	9	0	5	8	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	DLD--SLC26A4	4	0	DLD	2723	chr7:107533723:+	SLC26A4	41602	chr7:107355868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0454	0	DLD->chr7:107531415-107572175:+,dihydrolipoamide_dehydrogenase,SLC26A4->chr7:107301080-107358254:+,solute_carrier_family_26_member_4	SNUC4_LARGE_INTESTINE	1	1	0.0454	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	RP11-123O10.4--GRIP1	3	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0.0114	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNUC4_LARGE_INTESTINE	1	1	0.0455	FALSE	416	2512	207	587	0	FALSE	ACH-000959
SNUC4_LARGE_INTESTINE	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.44	0.0341	0.0114	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNUC4_LARGE_INTESTINE	0.44	1	0.0455	TRUE	458	1351	185	561	0	FALSE	ACH-000959
SNUC4_LARGE_INTESTINE	DCUN1D1--SAMD4B	3	0	DCUN1D1	4385	chr3:182683467:-	SAMD4B	23623	chr19:39842457:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	DCUN1D1->chr3:182655862-182703741:-,defective_in_cullin_neddylation_1_domain_containing_1,SAMD4B->chr19:39833036-39876350:+,sterile_alpha_motif_domain_containing_4B	SNUC4_LARGE_INTESTINE	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	FAM84A--MT-CO3	3	0	FAM84A	2502	chr2:14774311:+	MT-CO3	16532	chrM:9412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	FAM84A->chr2:14772810-14790933:+,family_with_sequence_similarity_84_member_A,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNUC4_LARGE_INTESTINE	1	1	0.0341	FALSE	0	0	0	3	0	FALSE	ACH-000959
SNUC4_LARGE_INTESTINE	LUC7L2--HMGN2	3	0	LUC7L2	6712	chr7:139090512:+	HMGN2	18325	chr1:26801604:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+,HMGN2->chr1:26798941-26802463:+,high_mobility_group_nucleosomal_binding_domain_2	SNUC4_LARGE_INTESTINE	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	METRNL--GNAS	3	0	METRNL	3790	chr17:81043199:+	GNAS	26274	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	METRNL->chr17:81037567-81052864:+,meteorin,_glial_cell_differentiation_regulator-like,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNUC4_LARGE_INTESTINE	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNUC4_LARGE_INTESTINE	1	1	0.0341	FALSE	462	80	0	856	0	FALSE	ACH-000959
SNUC4_LARGE_INTESTINE	REV3L--SEC62	3	0	REV3L	13487	chr6:111702528:-	SEC62	57678	chr3:169703593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,SEC62->SEC62_homolog,_preprotein_translocation_factor,chr3:169684423-169716161:+	SNUC4_LARGE_INTESTINE	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	SYF2--DSTN	3	0	SYF2	5127	chr1:25554682:-	DSTN	14366	chr20:17581539:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	SYF2->SYF2_pre-mRNA_splicing_factor,chr1:25549170-25558993:-,DSTN->chr20:17550508-17590564:+,destrin,_actin_depolymerizing_factor	SNUC4_LARGE_INTESTINE	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	MARK2--RTN3	2	1	MARK2	1633	chr11:63607032:+	RTN3	33435	chr11:63517463:+	ONLY_REF_SPLICE	YES	11	223	0.21	0.01	0.0227	0.0114	LOCAL_REARRANGEMENT:+:[79037],MARK2->chr11:63606400-63678491:+,microtubule_affinity_regulating_kinase_2,RTN3->chr11:63448918-63527363:+,reticulon_3	SNUC4_LARGE_INTESTINE	0.01	0.21	0.0341	FALSE	0	1	0	2	1	FALSE	ACH-000959
SNUC4_LARGE_INTESTINE	SAMD5--SASH1	2	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	5	3	0.38	0.5	0.0227	0.0114	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SNUC4_LARGE_INTESTINE	0.38	0.5	0.0341	TRUE	53	396	64	110	0	FALSE	ACH-000959
SNUC4_LARGE_INTESTINE	ABCD3--ARPC2	2	0	ABCD3	6938	chr1:94933563:+	ARPC2	40922	chr2:219104114:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+,ARPC2->actin_related_protein_2/3_complex_subunit_2,chr2:219081817-219119079:+	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	ABI2--CWC22	2	0	ABI2	1413	chr2:204193354:+	CWC22	45859	chr2:180858181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ABI2->abl-interactor_2,chr2:204192942-204312446:+,CWC22->CWC22_homolog,_spliceosome-associated_protein,chr2:180809603-180871840:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	ANKRD11--CHMP1A	2	0	ANKRD11	30739	chr16:89345480:-	CHMP1A	40529	chr16:89718054:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	BCLAF1--ATP5B	2	0	BCLAF1	16304	chr6:136582168:-	ATP5B	24531	chr12:57038739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	BCLAF1->BCL2_associated_transcription_factor_1,chr6:136578001-136610989:-,ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	BSG--MGA	2	0	BSG	2405	chr19:572701:+	MGA	15946	chr15:41961026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,MGA->MGA,_MAX_dimerization_protein,chr15:41913422-42062141:+	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	BSG--MIER3	2	0	BSG	2405	chr19:572701:+	MIER3	16754	chr5:56246479:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,MIER3->MIER_family_member_3,chr5:56215429-56267502:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	C11orf82--FDPS	2	0	C11orf82	2547	chr11:82612864:+	FDPS	22767	chr1:155287732:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	C11orf82->chr11:82611017-82669319:+,FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	C17orf76-AS1--RPL22	2	0	C17orf76-AS1	1593	chr17:16342728:+	RPL22	19126	chr1:6257816:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	C17orf76-AS1->chr17:16342136-16381992:+,RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	C2CD3--CTNND1	2	0	C2CD3	9194	chr11:73843889:-	CTNND1	77215	chr11:57583769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	C2CD3->C2_calcium-dependent_domain_containing_3,chr11:73723763-73882255:-,CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	CLCN3--FAT1	2	0	CLCN3	6612	chr4:170581599:+	FAT1	31838	chr4:187630999:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	CLCN3->chloride_voltage-gated_channel_3,chr4:170533784-170644824:+,FAT1->ArcherDX_panel,FAT_atypical_cadherin_1,FoundationOne_panel,Oncogene{Bushman},chr4:187508937-187647876:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	CYB5B--DHODH	2	0	CYB5B	1333	chr16:69458760:+	DHODH	24749	chr16:72057064:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B,DHODH->chr16:72042487-72058954:+,dihydroorotate_dehydrogenase_(quinone)	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	DNAJC11--SNRNP40	2	0	DNAJC11	3659	chr1:6738454:-	SNRNP40	28225	chr1:31754343:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	DNAJC11->DnaJ_heat_shock_protein_family_(Hsp40)_member_C11,chr1:6694228-6761984:-,SNRNP40->chr1:31732417-31769662:-,small_nuclear_ribonucleoprotein_U5_subunit_40	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	ERBB2IP--NLN	2	0	ERBB2IP	1332	chr5:65222634:+	NLN	48091	chr5:65083945:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_REARRANGEMENT:+:[54750],ERBB2IP->chr5:65222303-65378377:+,NLN->chr5:65018023-65167553:+,neurolysin	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	GPHN--LRRK1	2	0	GPHN	2185	chr14:66975309:+	LRRK1	41735	chr15:101514009:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,LRRK1->chr15:101459420-101610317:+,leucine-rich_repeat_kinase_1	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	IP6K2--PRKAR2A	2	0	IP6K2	6196	chr3:48754590:-	PRKAR2A	30492	chr3:48793877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_REARRANGEMENT:-:[4244],IP6K2->chr3:48725436-48777786:-,inositol_hexakisphosphate_kinase_2,PRKAR2A->chr3:48782030-48885279:-,protein_kinase_cAMP-dependent_type_II_regulatory_subunit_alpha	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	1	0	1	1	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	IVNS1ABP--SATB2	2	0	IVNS1ABP	1377	chr1:185286085:-	SATB2	19494	chr2:200325255:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein,SATB2->SATB_homeobox_2,chr2:200134223-200335989:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	KIF26A--MTA1	2	0	KIF26A	5391	chr14:104633385:+	MTA1	19806	chr14:105905009:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	KIF26A->chr14:104605060-104647231:+,kinesin_family_member_26A,MTA1->Oncogene{Bushman},chr14:105886159-105937066:+,metastasis_associated_1	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	LIMCH1--APBB2	2	0	LIMCH1	2330	chr4:41362953:+	APBB2	70303	chr4:40895428:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=2,Breast_-_Mammary_Tissue=1},LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	NAA60--TSTD2	2	0	NAA60	5221	chr16:3493827:+	TSTD2	31094	chr9:100373981:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NAA60->N(alpha)-acetyltransferase_60,_NatF_catalytic_subunit,chr16:3415099-3536960:+,chr16:3493611-3536963:+,TSTD2->chr9:100362362-100395962:-,thiosulfate_sulfurtransferase_like_domain_containing_2	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	NARS--GPI	2	0	NARS	5050	chr18:55280834:-	GPI	20902	chr19:34859554:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NARS->asparaginyl-tRNA_synthetase,chr18:55267888-55289445:-,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	145	312	16	51	0	FALSE	ACH-000959
SNUC4_LARGE_INTESTINE	NOP56--MAP4	2	0	NOP56	2249	chr20:2634039:+	MAP4	33729	chr3:47919013:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NOP56->NOP56_ribonucleoprotein,chr20:2632791-2639039:+,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	PDZD8--KIAA1598	2	0	PDZD8	2112	chr10:119133867:-	KIAA1598	19791	chr10:118738819:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	PDZD8->PDZ_domain_containing_8,chr10:119040000-119134978:-,KIAA1598->chr10:118643742-118886097:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	PYGB--REV1	2	0	PYGB	1353	chr20:25229057:+	REV1	27297	chr2:100081447:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	PYGB->chr20:25228705-25278650:+,phosphorylase,_glycogen;_brain,REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	RP11-260M19.2--BCAR1	2	0	RP11-260M19.2	1233	chr14:104690153:+	BCAR1	20522	chr16:75276988:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RP11-260M19.2->chr14:104689921-104754406:+,BCAR1->BCAR1,_Cas_family_scaffolding_protein,chr16:75262928-75301951:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	RPL36A--FUT8	2	0	RPL36A	1999	chrX:100646810:+	FUT8	19595	chr14:66028055:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RPL36A->chrX:100645812-100651105:+,ribosomal_protein_L36a,FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	SEPT9--ITPKA	2	0	SEPT9	6917	chr17:75303279:+	ITPKA	48288	chr15:41793661:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,ITPKA->chr15:41785591-41795747:+,inositol-trisphosphate_3-kinase_A	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	SF3B1--NCKAP1	2	0	SF3B1	1120	chr2:198299696:-	NCKAP1	30136	chr2:183888644:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:1/3694=0.03%,SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1,NCKAP1->NCK_associated_protein_1,chr2:183773843-183903586:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	SHFM1--AASS	2	0	SHFM1	1204	chr7:96339000:-	AASS	37648	chr7:121733212:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,AASS->aminoadipate-semialdehyde_synthase,chr7:121715701-121784334:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	TRA2B--MARK3	2	0	TRA2B	5984	chr3:185649365:-	MARK3	48782	chr14:103969219:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	TRMT11--ECHDC1	2	0	TRMT11	12113	chr6:126334247:+	ECHDC1	30997	chr6:127611422:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	TRMT11->chr6:126307576-126360422:+,tRNA_methyltransferase_11_homolog,ECHDC1->chr6:127609855-127664754:-,ethylmalonyl-CoA_decarboxylase_1	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	UBA2--FBXL18	2	0	UBA2	6735	chr19:34925873:+	FBXL18	28081	chr7:5531080:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	UBA2->chr19:34919257-34960853:+,ubiquitin_like_modifier_activating_enzyme_2,FBXL18->F-box_and_leucine-rich_repeat_protein_18,chr7:5470966-5553429:-	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	ZBTB7A--MAP2K2	2	0	ZBTB7A	4793	chr19:4053969:-	MAP2K2	18580	chr19:4102451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_REARRANGEMENT:-:[23376],ZBTB7A->chr19:4044362-4066943:-,zinc_finger_and_BTB_domain_containing_7A,MAP2K2->ArcherDX_panel,FoundationOne_panel,chr19:4090319-4124126:-,mitogen-activated_protein_kinase_kinase_2	SNUC4_LARGE_INTESTINE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	IMPACT--CABYR	1	2	IMPACT	2432	chr18:22008011:+	CABYR	24495	chr18:21735668:+	ONLY_REF_SPLICE	YES	21	0	0.12	1	0.0114	0.0227	IMPACT->chr18:22006580-22033499:+,impact_RWD_domain_protein,CABYR->calcium_binding_tyrosine_phosphorylation_regulated,chr18:21718942-21741567:+	SNUC4_LARGE_INTESTINE	0.12	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	DNM2--MNT	1	1	DNM2	1325	chr19:10829079:+	MNT	44056	chr17:2298748:-	ONLY_REF_SPLICE	YES	34	3	0.06	0.4	0.0114	0.0114	DNM2->chr19:10828755-10944164:+,dynamin_2,MNT->MAX_network_transcriptional_repressor,chr17:2287354-2304412:-	SNUC4_LARGE_INTESTINE	0.06	0.4	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000959
SNUC4_LARGE_INTESTINE	TBC1D4--RP11-173B14.5	1	1	TBC1D4	11640	chr13:75900333:-	RP11-173B14.5	34473	chr13:76179081:-	ONLY_REF_SPLICE	YES	28	0	0.07	1	0.0114	0.0114	TBC1D4->TBC1_domain_family_member_4,chr13:75858808-76056250:-,RP11-173B14.5->chr13:76178836-76210130:-	SNUC4_LARGE_INTESTINE	0.07	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000959
HCC38_BREAST	PRMT1--BCL2L12	474	144	PRMT1	6651	chr19:50185516:+	BCL2L12	22148	chr19:50176955:+	ONLY_REF_SPLICE	YES	697	101	0.47	0.86	4.9043	1.4899	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[1870],PRMT1->chr19:50179043-50192286:+,protein_arginine_methyltransferase_1,BCL2L12->BCL2_like_12,Oncogene{Bushman},chr19:50168823-50177173:+	HCC38_BREAST	0.47	0.86	6.3942	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	TIMM23B--LINC00843	348	84	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	3.6007	0.8691	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC38_BREAST	1	1	4.4698	TRUE	508	994	45	981	0	FALSE	ACH-000276
HCC38_BREAST	TMEM123--MMP20	190	83	TMEM123	5695	chr11:102319543:-	MMP20	18036	chr11:102480761:-	ONLY_REF_SPLICE	YES	682	20	0.29	0.93	1.9659	0.8588	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Breast=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,MMP20->chr11:102447566-102496063:-,matrix_metallopeptidase_20	HCC38_BREAST	0.29	0.93	2.8247	TRUE	0	1	0	1	1	TRUE	ACH-000276
HCC38_BREAST	TIMM23--RP11-464F9.1	200	10	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	316	6	0.4	0.97	2.0693	0.1035	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC38_BREAST	0.4	0.97	2.1728	TRUE	519	3926	326	965	0	FALSE	ACH-000276
HCC38_BREAST	MTAP--PCDH7	155	61	MTAP	9899	chr9:21854869:+	PCDH7	30562	chr4:30921775:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.6037	0.6311	{Klijn_CCL:Breast=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,PCDH7->chr4:30722037-31148422:+,protocadherin_7	HCC38_BREAST	1	1	2.2348	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	SPRED1--BUB1B	103	45	SPRED1	4131	chr15:38591748:+	BUB1B	21494	chr15:40457254:+	ONLY_REF_SPLICE	YES	20	169	0.88	0.47	1.0657	0.4656	SPRED1->chr15:38544527-38649450:+,sprouty_related_EVH1_domain_containing_1,BUB1B->BUB1_mitotic_checkpoint_serine/threonine_kinase_B,Oncogene{Bushman},chr15:40453224-40513337:+	HCC38_BREAST	0.47	0.88	1.5313	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	PTPRA--HHLA1	110	12	PTPRA	4554	chr20:2903931:+	HHLA1	35071	chr8:133111209:-	ONLY_REF_SPLICE	YES	58	0	0.68	1	1.1381	0.1242	PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A,HHLA1->HERV-H_LTR-associating_1,chr8:133073733-133123406:-	HCC38_BREAST	0.68	1	1.2623	FALSE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	ATAD2--CTD-2207P18.1	82	32	ATAD2	3815	chr8:124408427:-	CTD-2207P18.1	36016	chr14:75026467:+	ONLY_REF_SPLICE	YES	314	0	0.27	1	0.8484	0.3311	ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-,CTD-2207P18.1->chr14:75018884-75026751:+	HCC38_BREAST	0.27	1	1.1795	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	TMEM123--MMP20	54	100	TMEM123	5695	chr11:102319543:-	MMP20	16887	chr11:102482634:-	ONLY_REF_SPLICE	YES	682	0	0.18	1	0.5587	1.0347	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Breast=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,MMP20->chr11:102447566-102496063:-,matrix_metallopeptidase_20	HCC38_BREAST	0.18	1	1.5934	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	XRCC6--UQCC2	66	31	XRCC6	9366	chr22:42049694:+	UQCC2	18565	chr6:33669197:-	ONLY_REF_SPLICE	YES	1138	189	0.08	0.34	0.6829	0.3207	XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+,UQCC2->chr6:33662070-33679504:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_2	HCC38_BREAST	0.08	0.34	1.0036	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MBOAT2--PRKCE	64	38	MBOAT2	8249	chr2:9022641:-	PRKCE	56074	chr2:46372232:+	ONLY_REF_SPLICE	YES	1	3	0.99	0.97	0.6622	0.3932	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},MBOAT2->chr2:8992820-9143942:-,membrane_bound_O-acyltransferase_domain_containing_2,PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon	HCC38_BREAST	0.97	0.99	1.0554	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	UBE2E1--COL24A1	61	24	UBE2E1	8346	chr3:23929190:+	COL24A1	53186	chr1:86315089:-	ONLY_REF_SPLICE	YES	509	2	0.14	0.98	0.6311	0.2483	{Klijn_CCL:Breast=1},UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1	HCC38_BREAST	0.14	0.98	0.8794	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	VPS37A--PIGN	55	30	VPS37A	5756	chr8:17126464:+	PIGN	37811	chr18:59805532:-	INCL_NON_REF_SPLICE	YES	23	48	0.79	0.64	0.5691	0.3104	VPS37A->VPS37A,_ESCRT-I_subunit,chr8:17104080-17159936:+,PIGN->chr18:59710800-59854351:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_N	HCC38_BREAST	0.64	0.79	0.8795	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	RNF111--TCF12	49	35	RNF111	2542	chr15:59280267:+	TCF12	40444	chr15:57484356:+	ONLY_REF_SPLICE	YES	32	95	0.72	0.47	0.507	0.3621	RNF111->chr15:59157374-59389618:+,ring_finger_protein_111,TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12	HCC38_BREAST	0.47	0.72	0.8691	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ZNF654--HMGB2	55	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5691	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HCC38_BREAST	1	1	0.5691	TRUE	0	0	0	518	0	FALSE	ACH-000276
HCC38_BREAST	PRMT1--BCL2L12	17	106	PRMT1	6457	chr19:50185322:+	BCL2L12	22148	chr19:50176955:+	ONLY_REF_SPLICE	YES	802	101	0.13	0.55	0.1759	1.0968	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[1870],PRMT1->chr19:50179043-50192286:+,protein_arginine_methyltransferase_1,BCL2L12->BCL2_like_12,Oncogene{Bushman},chr19:50168823-50177173:+	HCC38_BREAST	0.13	0.55	1.2727	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ARHGAP35--IGSF23	38	11	ARHGAP35	4681	chr19:47425613:+	IGSF23	22240	chr19:45127000:+	ONLY_REF_SPLICE	YES	132	0	0.27	1	0.3932	0.1138	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,IGSF23->chr19:45116940-45140081:+,immunoglobulin_superfamily_member_23	HCC38_BREAST	0.27	1	0.507	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	PRMT1--BCL2L12	3	145	PRMT1	6651	chr19:50185516:+	BCL2L12	21053	chr19:50175364:+	INCL_NON_REF_SPLICE	YES	697	119	0.18	0.55	0.031	1.5003	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[1870],PRMT1->chr19:50179043-50192286:+,protein_arginine_methyltransferase_1,BCL2L12->BCL2_like_12,Oncogene{Bushman},chr19:50168823-50177173:+	HCC38_BREAST	0.18	0.55	1.5313	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	TPD52--PAG1	37	2	TPD52	6214	chr8:81083660:-	PAG1	30869	chr8:81982405:-	ONLY_REF_SPLICE	YES	195	1	0.17	0.97	0.3828	0.0207	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,PAG1->chr8:81880045-82024303:-,phosphoprotein_membrane_anchor_with_glycosphingolipid_microdomains_1	HCC38_BREAST	0.17	0.97	0.4035	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	PDZRN3--RP11-20B7.1	33	16	PDZRN3	4033	chr3:73651505:-	RP11-20B7.1	27159	chr3:73918927:+	ONLY_REF_SPLICE	YES	5	0	0.91	1	0.3414	0.1655	PDZRN3->PDZ_domain_containing_ring_finger_3,chr3:73431584-73674091:-,RP11-20B7.1->chr3:73857752-73952017:+	HCC38_BREAST	0.91	1	0.5069	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MED1--GSDMB	29	16	MED1	6915	chr17:37595418:-	GSDMB	28841	chr17:38073574:-	ONLY_REF_SPLICE	YES	107	23	0.3	0.66	0.3001	0.1655	MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,GSDMB->chr17:38060848-38076107:-,gasdermin_B	HCC38_BREAST	0.3	0.66	0.4656	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	METTL15--RP11-22P4.1	31	1	METTL15	2441	chr11:28131948:+	RP11-22P4.1	21552	chr11:28383484:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3207	0.0103	NEIGHBORS[18600],METTL15->chr11:28129795-28355054:+,methyltransferase_like_15,RP11-22P4.1->chr11:28373654-28548588:+	HCC38_BREAST	1	1	0.331	FALSE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	COL24A1--GSTM1	27	15	COL24A1	47057	chr1:86282471:-	GSTM1	65034	chr1:110231295:+	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.2794	0.1552	COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1,GSTM1->Oncogene{Bushman},chr1:110230436-110251661:+,glutathione_S-transferase_mu_1	HCC38_BREAST	0.98	1	0.4346	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	KMT2A--ATP5L	27	15	KMT2A	16644	chr11:118353210:+	ATP5L	59807	chr11:118301739:+	ONLY_REF_SPLICE	YES	59	0	0.42	1	0.2794	0.1552	LOCAL_REARRANGEMENT:+:[4994],KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,ATP5L->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_G,chr11:118271869-118302211:+	HCC38_BREAST	0.42	1	0.4346	TRUE	0	1	0	1	1	TRUE	ACH-000276
HCC38_BREAST	COL24A1--GSTM1	26	18	COL24A1	47057	chr1:86282471:-	GSTM1	64531	chr1:110230792:+	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.269	0.1862	COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1,GSTM1->Oncogene{Bushman},chr1:110230436-110251661:+,glutathione_S-transferase_mu_1	HCC38_BREAST	0.98	1	0.4552	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MEF2A--RP11-183E24.1	28	9	MEF2A	12520	chr15:100215663:+	RP11-183E24.1	25427	chr15:98661401:+	INCL_NON_REF_SPLICE	YES	150	0	0.2	1	0.2897	0.0931	MEF2A->chr15:100017370-100256671:+,myocyte_enhancer_factor_2A,RP11-183E24.1->chr15:98661400-98661549:+	HCC38_BREAST	0.2	1	0.3828	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	LCORL--RAB2A	26	13	LCORL	7877	chr4:17910717:-	RAB2A	32563	chr8:61531139:+	ONLY_REF_SPLICE	YES	0	198	1	0.16	0.269	0.1345	LCORL->chr4:17842822-18023499:-,ligand_dependent_nuclear_receptor_corepressor_like,RAB2A->RAB2A,_member_RAS_oncogene_family,chr8:61429416-61536186:+	HCC38_BREAST	0.16	1	0.4035	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MT-TA--MT-TC	27	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2794	0.0621	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC38_BREAST	1	1	0.3415	FALSE	462	80	0	856	0	FALSE	ACH-000276
HCC38_BREAST	WDR70--NIPBL	26	6	WDR70	2427	chr5:37381787:+	NIPBL	27877	chr5:36953720:+	ONLY_REF_SPLICE	YES	100	28	0.24	0.53	0.269	0.0621	WDR70->WD_repeat_domain_70,chr5:37379314-37753537:+,NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+	HCC38_BREAST	0.24	0.53	0.3311	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	STAT3--PTRF	23	12	STAT3	1290	chr17:40540297:-	PTRF	28979	chr17:40557406:-	ONLY_REF_SPLICE	YES	403	844	0.08	0.04	0.238	0.1242	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:-:[13884],STAT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:40465342-40540586:-,signal_transducer_and_activator_of_transcription_3,PTRF->chr17:40554470-40575535:-,polymerase_I_and_transcript_release_factor	HCC38_BREAST	0.04	0.08	0.3622	TRUE	0	6	1	3	4	TRUE	ACH-000276
HCC38_BREAST	TMEM123--MMP20	1	100	TMEM123	6271	chr11:102318967:-	MMP20	16887	chr11:102482634:-	ONLY_REF_SPLICE	NO	711	0	0.12	1	0.0103	1.0347	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Breast=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,MMP20->chr11:102447566-102496063:-,matrix_metallopeptidase_20	HCC38_BREAST	0.12	1	1.045	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	SLC26A6--PRKAR2A	21	8	SLC26A6	8505	chr3:48665379:-	PRKAR2A	17330	chr3:48828060:-	ONLY_REF_SPLICE	YES	27	58	0.52	0.33	0.2173	0.0828	Cosmic{samples=2,mutations=2,papers=1},Mitelman{CA_ad=1},{Klijn_CCL:Breast=1},SLC26A6->chr3:48663156-48672926:-,solute_carrier_family_26_member_6,PRKAR2A->chr3:48782030-48885279:-,protein_kinase_cAMP-dependent_type_II_regulatory_subunit_alpha	HCC38_BREAST	0.33	0.52	0.3001	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	PRKCE--MBOAT2	19	13	PRKCE	30038	chr2:46313501:+	MBOAT2	48366	chr2:9028203:-	ONLY_REF_SPLICE	YES	4	5	0.89	0.86	0.1966	0.1345	{Klijn_CCL:Breast=1},PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,MBOAT2->chr2:8992820-9143942:-,membrane_bound_O-acyltransferase_domain_containing_2	HCC38_BREAST	0.86	0.89	0.3311	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	HMGXB3--PPARGC1B	16	24	HMGXB3	10733	chr5:149406680:+	PPARGC1B	35409	chr5:149210330:+	ONLY_REF_SPLICE	YES	38	0	0.51	1	0.1655	0.2483	HMGXB3->HMG-box_containing_3,chr5:149379884-149432386:+,PPARGC1B->PPARG_coactivator_1_beta,chr5:149109861-149234585:+	HCC38_BREAST	0.51	1	0.4138	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MT-ND4--MT-ND4L	3	76	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	347	0	0.19	1	0.031	0.7863	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC38_BREAST	0.19	1	0.8173	FALSE	344	827	44	306	0	FALSE	ACH-000276
HCC38_BREAST	ARHGAP35--IGSF23	21	3	ARHGAP35	4681	chr19:47425613:+	IGSF23	24664	chr19:45138701:+	ONLY_REF_SPLICE	YES	132	38	0.15	0.39	0.2173	0.031	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,IGSF23->chr19:45116940-45140081:+,immunoglobulin_superfamily_member_23	HCC38_BREAST	0.15	0.39	0.2483	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MT-ND4--MT-ND4L	3	74	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	7	0	0.92	1	0.031	0.7657	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC38_BREAST	0.92	1	0.7967	FALSE	344	826	44	306	0	FALSE	ACH-000276
HCC38_BREAST	NOTCH2--SEC22B	19	8	NOTCH2	12808	chr1:120529583:-	SEC22B	54040	chr1:145103908:+	ONLY_REF_SPLICE	YES	180	450	0.13	0.06	0.1966	0.0828	NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HCC38_BREAST	0.06	0.13	0.2794	TRUE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	RP11-820L6.1--ZNF202	20	4	RP11-820L6.1	11286	chr11:122026259:-	ZNF202	21179	chr11:123598970:-	ONLY_REF_SPLICE	YES	0	11	1	0.69	0.2069	0.0414	RP11-820L6.1->chr11:122026130-122293579:-,ZNF202->chr11:123594885-123612383:-,zinc_finger_protein_202	HCC38_BREAST	0.69	1	0.2483	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	AC092295.4--LSR	18	6	AC092295.4	2296	chr19:37025894:+	LSR	8870	chr19:35749848:+	ONLY_REF_SPLICE	YES	0	303	1	0.07	0.1862	0.0621	AC092295.4->chr19:37019220-37026137:+,LSR->chr19:35739233-35758867:+,lipolysis_stimulated_lipoprotein_receptor	HCC38_BREAST	0.07	1	0.2483	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MED1--GSDMB	15	17	MED1	6915	chr17:37595418:-	GSDMB	28832	chr17:38073583:-	ONLY_REF_SPLICE	YES	107	22	0.23	0.59	0.1552	0.1759	MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,GSDMB->chr17:38060848-38076107:-,gasdermin_B	HCC38_BREAST	0.23	0.59	0.3311	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ARHGAP35--IGSF23	15	11	ARHGAP35	4681	chr19:47425613:+	IGSF23	22244	chr19:45127004:+	ONLY_REF_SPLICE	YES	132	0	0.16	1	0.1552	0.1138	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,IGSF23->chr19:45116940-45140081:+,immunoglobulin_superfamily_member_23	HCC38_BREAST	0.16	1	0.269	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	HMGXB3--PPARGC1B	13	19	HMGXB3	10733	chr5:149406680:+	PPARGC1B	36526	chr5:149212219:+	ONLY_REF_SPLICE	YES	38	4	0.46	0.89	0.1345	0.1966	HMGXB3->HMG-box_containing_3,chr5:149379884-149432386:+,PPARGC1B->PPARG_coactivator_1_beta,chr5:149109861-149234585:+	HCC38_BREAST	0.46	0.89	0.3311	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MT-ND4--MT-ND4L	6	47	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	1	0.96	0.98	0.0621	0.4863	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC38_BREAST	0.96	0.98	0.5484	FALSE	344	821	44	306	0	FALSE	ACH-000276
HCC38_BREAST	UBE2E1--COL24A1	15	6	UBE2E1	6001	chr3:23853001:+	COL24A1	53186	chr1:86315089:-	ONLY_REF_SPLICE	YES	421	2	0.05	0.91	0.1552	0.0621	{Klijn_CCL:Breast=1},UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1,COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1	HCC38_BREAST	0.05	0.91	0.2173	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	NOS1AP--IFI16	15	5	NOS1AP	1509	chr1:162040072:+	IFI16	28048	chr1:158979793:+	ONLY_REF_SPLICE	YES	2	4	0.91	0.83	0.1552	0.0517	NOS1AP->chr1:162039564-162353321:+,nitric_oxide_synthase_1_adaptor_protein,IFI16->chr1:158969758-159024945:+,interferon_gamma_inducible_protein_16	HCC38_BREAST	0.83	0.91	0.2069	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	RNF111--TCF12	7	37	RNF111	4052	chr15:59296373:+	TCF12	40444	chr15:57484356:+	ONLY_REF_SPLICE	YES	29	95	0.6	0.32	0.0724	0.3828	RNF111->chr15:59157374-59389618:+,ring_finger_protein_111,TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12	HCC38_BREAST	0.32	0.6	0.4552	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	C7orf50--AC060834.3	15	3	C7orf50	3078	chr7:1166893:-	AC060834.3	21299	chr7:9808862:+	ONLY_REF_SPLICE	YES	318	0	0.05	1	0.1552	0.031	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,AC060834.3->chr7:9776951-9809142:+	HCC38_BREAST	0.05	1	0.1862	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ADAM9--RANGRF	14	6	ADAM9	13215	chr8:38884329:+	RANGRF	31120	chr17:8192097:+	INCL_NON_REF_SPLICE	YES	543	20	0.04	0.5	0.1449	0.0621	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,RANGRF->RAN_guanine_nucleotide_release_factor,chr17:8191815-8193410:+	HCC38_BREAST	0.04	0.5	0.207	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ADAM9--DDHD2	11	17	ADAM9	1292	chr8:38854679:+	DDHD2	54200	chr8:38130888:+	ONLY_REF_SPLICE	YES	594	4	0.05	0.88	0.1138	0.1759	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,DDHD2->DDHD_domain_containing_2,chr8:38082736-38133076:+	HCC38_BREAST	0.05	0.88	0.2897	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	KCNS3--WRNIP1	12	10	KCNS3	1960	chr2:18060073:+	WRNIP1	16359	chr6:2768925:+	ONLY_REF_SPLICE	YES	5	126	0.81	0.15	0.1242	0.1035	KCNS3->chr2:18059114-18542882:+,potassium_voltage-gated_channel_modifier_subfamily_S_member_3,WRNIP1->Werner_helicase_interacting_protein_1,chr6:2765648-2787186:+	HCC38_BREAST	0.15	0.81	0.2277	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	RP11-123O10.4--GRIP1	13	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1345	0.031	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC38_BREAST	1	1	0.1655	FALSE	416	2512	207	587	0	FALSE	ACH-000276
HCC38_BREAST	MT-ND6--MT-ND5	12	4	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	2281	1	0.01	0.1242	0.0414	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HCC38_BREAST	0.01	1	0.1656	FALSE	101	855	57	72	0	FALSE	ACH-000276
HCC38_BREAST	PLXDC1--TAF13	13	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1345	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCC38_BREAST	1	1	0.1345	TRUE	7	10	0	216	0	FALSE	ACH-000276
HCC38_BREAST	MT-ND6--MT-TE	12	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1242	0.0103	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC38_BREAST	1	1	0.1345	FALSE	499	1288	110	792	0	FALSE	ACH-000276
HCC38_BREAST	COL24A1--GSTM1	11	4	COL24A1	47057	chr1:86282471:-	GSTM1	69466	chr1:110251103:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1138	0.0414	COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1,GSTM1->Oncogene{Bushman},chr1:110230436-110251661:+,glutathione_S-transferase_mu_1	HCC38_BREAST	0.94	1	0.1552	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	PRR16--CTD-2334D19.1	11	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	147	1	0.09	0.93	0.1138	0.031	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HCC38_BREAST	0.09	0.93	0.1448	FALSE	56	216	12	147	0	FALSE	ACH-000276
HCC38_BREAST	MIR100--ZNF202	11	2	MIR100	1064	chr11:122022953:-	ZNF202	10844	chr11:123598970:-	INCL_NON_REF_SPLICE	YES	0	11	1	0.54	0.1138	0.0207	MIR100->chr11:122022937-122023016:-,microRNA_100,ZNF202->chr11:123594885-123612383:-,zinc_finger_protein_202	HCC38_BREAST	0.54	1	0.1345	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ARHGAP35--PVR	10	3	ARHGAP35	4681	chr19:47425613:+	PVR	19923	chr19:45147260:+	INCL_NON_REF_SPLICE	YES	132	9	0.09	0.59	0.1035	0.031	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,PVR->chr19:45147098-45166850:+,poliovirus_receptor	HCC38_BREAST	0.09	0.59	0.1345	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	XRCC6--UQCC2	3	27	XRCC6	9353	chr22:42049681:+	UQCC2	18565	chr6:33669197:-	INCL_NON_REF_SPLICE	YES	1071	189	0.03	0.14	0.031	0.2794	XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+,UQCC2->chr6:33662070-33679504:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_2	HCC38_BREAST	0.03	0.14	0.3104	TRUE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	HSP90AB1--MT-RNR2	9	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2102	0	0.01	1	0.0931	0.0207	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC38_BREAST	0.01	1	0.1138	FALSE	13	9	0	364	0	FALSE	ACH-000276
HCC38_BREAST	ADAM9--DDHD2	5	17	ADAM9	1292	chr8:38854679:+	DDHD2	54203	chr8:38130891:+	INCL_NON_REF_SPLICE	YES	594	4	0.04	0.85	0.0517	0.1759	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,DDHD2->DDHD_domain_containing_2,chr8:38082736-38133076:+	HCC38_BREAST	0.04	0.85	0.2276	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MED1--GSDMB	4	21	MED1	6915	chr17:37595418:-	GSDMB	27920	chr17:38074495:-	INCL_NON_REF_SPLICE	YES	107	9	0.19	0.74	0.0414	0.2173	MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,GSDMB->chr17:38060848-38076107:-,gasdermin_B	HCC38_BREAST	0.19	0.74	0.2587	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	C15orf57--CBX3	8	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	66	19	0.15	0.39	0.0828	0.0414	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC38_BREAST	0.15	0.39	0.1242	TRUE	267	562	48	632	0	FALSE	ACH-000276
HCC38_BREAST	KCNS3--WRNIP1	8	4	KCNS3	1960	chr2:18060073:+	WRNIP1	18793	chr6:2779497:+	ONLY_REF_SPLICE	YES	5	266	0.71	0.04	0.0828	0.0414	KCNS3->chr2:18059114-18542882:+,potassium_voltage-gated_channel_modifier_subfamily_S_member_3,WRNIP1->Werner_helicase_interacting_protein_1,chr6:2765648-2787186:+	HCC38_BREAST	0.04	0.71	0.1242	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	RP11-141M1.3--STARD13	8	3	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	35	0.92	0.24	0.0828	0.031	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HCC38_BREAST	0.24	0.92	0.1138	FALSE	141	264	50	91	0	FALSE	ACH-000276
HCC38_BREAST	PHTF1--LRIF1	8	2	PHTF1	2791	chr1:114300321:-	LRIF1	29726	chr1:111492745:-	ONLY_REF_SPLICE	YES	55	120	0.15	0.08	0.0828	0.0207	PHTF1->chr1:114239453-114302111:-,putative_homeodomain_transcription_factor_1,LRIF1->chr1:111489807-111506701:-,ligand_dependent_nuclear_receptor_interacting_factor_1	HCC38_BREAST	0.08	0.15	0.1035	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MED1--GSDMB	3	21	MED1	6915	chr17:37595418:-	GSDMB	27537	chr17:38074878:-	INCL_NON_REF_SPLICE	YES	107	8	0.18	0.75	0.031	0.2173	MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,GSDMB->chr17:38060848-38076107:-,gasdermin_B	HCC38_BREAST	0.18	0.75	0.2483	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MT-CO3--MT-ATP6	4	15	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	4	0.9	0.83	0.0414	0.1552	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC38_BREAST	0.83	0.9	0.1966	FALSE	189	492	56	216	0	FALSE	ACH-000276
HCC38_BREAST	RP11-141M1.3--STARD13	7	3	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	35	1	0.22	0.0724	0.031	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HCC38_BREAST	0.22	1	0.1034	FALSE	49	120	16	70	0	FALSE	ACH-000276
HCC38_BREAST	MT-CO3--MT-ATP6	4	14	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.86	0.0414	0.1449	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC38_BREAST	0.86	1	0.1863	FALSE	189	492	56	216	0	FALSE	ACH-000276
HCC38_BREAST	RP4-565E6.1--HYDIN	7	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	5	1	0.64	0.0724	0.0207	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HCC38_BREAST	0.64	1	0.0931	TRUE	456	1387	91	133	0	FALSE	ACH-000276
HCC38_BREAST	WRNIP1--KCNS3	7	1	WRNIP1	2031	chr6:2766678:+	KCNS3	15858	chr2:18098947:+	ONLY_REF_SPLICE	YES	132	5	0.06	0.62	0.0724	0.0103	WRNIP1->Werner_helicase_interacting_protein_1,chr6:2765648-2787186:+,KCNS3->chr2:18059114-18542882:+,potassium_voltage-gated_channel_modifier_subfamily_S_member_3	HCC38_BREAST	0.06	0.62	0.0827	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	CTGF--RPS28	7	0	CTGF	1152	chr6:132272362:-	RPS28	7541	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0724	0	GTEx&tcga_normals:1/3694=0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC38_BREAST	1	1	0.0724	TRUE	0	0	0	5	0	TRUE	ACH-000276
HCC38_BREAST	FBXL17--PJA2	7	0	FBXL17	2400	chr5:107716400:-	PJA2	23130	chr5:108719221:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0724	0	FBXL17->F-box_and_leucine-rich_repeat_protein_17,chr5:107194736-107717799:-,PJA2->chr5:108670410-108745695:-,praja_ring_finger_ubiquitin_ligase_2	HCC38_BREAST	1	1	0.0724	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ITGB6--RBMS1	5	8	ITGB6	15209	chr2:161025723:-	RBMS1	47674	chr2:161137875:-	ONLY_REF_SPLICE	YES	615	231	0.02	0.05	0.0517	0.0828	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[263],ITGB6->chr2:160956177-161128399:-,integrin_subunit_beta_6,RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-	HCC38_BREAST	0.02	0.05	0.1345	TRUE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	MT-ND6--MT-TE	5	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.0517	0.0828	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC38_BREAST	0.87	1	0.1345	FALSE	499	1288	110	792	0	FALSE	ACH-000276
HCC38_BREAST	SCAPER--TM6SF1	7	0	SCAPER	10139	chr15:77092589:-	TM6SF1	53502	chr15:83781549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0724	0	{Klijn_CCL:Breast=1},SCAPER->S-phase_cyclin_A-associated_protein_in_the_ER,chr15:76640526-77197785:-,TM6SF1->chr15:83776159-83813606:+,transmembrane_6_superfamily_member_1	HCC38_BREAST	1	1	0.0724	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ATP6AP1L--MSH3	6	3	ATP6AP1L	2469	chr5:81576830:+	MSH3	43424	chr5:80074539:+	ONLY_REF_SPLICE	YES	2	18	0.82	0.33	0.0621	0.031	ATP6AP1L->ATPase_H+_transporting_accessory_protein_1_like,chr5:81575281-81682796:+,MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3	HCC38_BREAST	0.33	0.82	0.0931	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MT-TA--MT-TC	5	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0517	0.0621	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC38_BREAST	1	1	0.1138	FALSE	462	80	0	856	0	FALSE	ACH-000276
HCC38_BREAST	NOTCH2--SEC22B	4	9	NOTCH2	12808	chr1:120529583:-	SEC22B	52747	chr1:145100692:+	ONLY_REF_SPLICE	YES	180	512	0.07	0.02	0.0414	0.0931	NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HCC38_BREAST	0.02	0.07	0.1345	TRUE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	MT-ND6--MT-ND5	6	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HCC38_BREAST	1	1	0.0621	FALSE	101	855	57	72	0	FALSE	ACH-000276
HCC38_BREAST	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC38_BREAST	1	1	0.0621	FALSE	462	80	0	856	0	FALSE	ACH-000276
HCC38_BREAST	PTPRA--HHLA1	4	8	PTPRA	4554	chr20:2903931:+	HHLA1	36152	chr8:133108033:-	ONLY_REF_SPLICE	YES	58	1	0.17	0.92	0.0414	0.0828	PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A,HHLA1->HERV-H_LTR-associating_1,chr8:133073733-133123406:-	HCC38_BREAST	0.17	0.92	0.1242	FALSE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	RP11-739L10.1--ADCY8	6	0	RP11-739L10.1	4480	chr18:20279534:-	ADCY8	13097	chr8:131964244:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0	RP11-739L10.1->chr18:20279444-20513727:-,ADCY8->adenylate_cyclase_8_(brain),chr8:131792547-132054672:-	HCC38_BREAST	1	1	0.0621	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MT-ND6--MT-TE	4	7	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0.0724	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC38_BREAST	1	1	0.1138	FALSE	499	1288	110	792	0	FALSE	ACH-000276
HCC38_BREAST	SDHD--DLAT	5	2	SDHD	3239	chr11:111959735:+	DLAT	32786	chr11:111933130:+	ONLY_REF_SPLICE	YES	427	88	0.02	0.07	0.0517	0.0207	{Klijn_CCL:Breast=1},LOCAL_INVERSION:+,chr11:+:[22383],SDHD->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:111957497-111990353:+,chr11:111957627-112064528:+,succinate_dehydrogenase_complex_subunit_D,DLAT->chr11:111895538-111935114:+,dihydrolipoamide_S-acetyltransferase	HCC38_BREAST	0.02	0.07	0.0724	TRUE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	HSP90AB1--MT-RNR2	5	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2081	0	0	1	0.0517	0.0103	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC38_BREAST	0	1	0.062	FALSE	13	9	0	364	0	FALSE	ACH-000276
HCC38_BREAST	MT-ND4--MT-ND4L	5	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC38_BREAST	1	1	0.0517	FALSE	344	821	44	306	0	FALSE	ACH-000276
HCC38_BREAST	NOTCH2--SEC22B	4	4	NOTCH2	12808	chr1:120529583:-	SEC22B	55150	chr1:145109524:+	ONLY_REF_SPLICE	YES	180	511	0.04	0.02	0.0414	0.0414	NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HCC38_BREAST	0.02	0.04	0.0828	TRUE	0	0	0	2	0	FALSE	ACH-000276
HCC38_BREAST	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC38_BREAST	1	1	0.0517	TRUE	458	1351	185	561	0	FALSE	ACH-000276
HCC38_BREAST	WRNIP1--KCNS3	5	0	WRNIP1	2031	chr6:2766678:+	KCNS3	18278	chr2:18112217:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	WRNIP1->Werner_helicase_interacting_protein_1,chr6:2765648-2787186:+,KCNS3->chr2:18059114-18542882:+,potassium_voltage-gated_channel_modifier_subfamily_S_member_3	HCC38_BREAST	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	L3MBTL4--AC002472.11	4	3	L3MBTL4	22012	chr18:6093354:-	AC002472.11	37062	chr22:21396992:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0414	0.031	L3MBTL4->chr18:5954705-6415236:-,l(3)mbt-like_4_(Drosophila),AC002472.11->chr22:21385646-21398258:+	HCC38_BREAST	0.78	1	0.0724	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MTAP--PCDH7	1	15	MTAP	8659	chr9:21838009:+	PCDH7	30562	chr4:30921775:+	ONLY_REF_SPLICE	NO	56	0	0.22	1	0.0103	0.1552	{Klijn_CCL:Breast=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,PCDH7->chr4:30722037-31148422:+,protocadherin_7	HCC38_BREAST	0.22	1	0.1655	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	COL24A1--GSTM1	2	10	COL24A1	47057	chr1:86282471:-	GSTM1	65409	chr1:110231670:+	ONLY_REF_SPLICE	YES	1	8	0.92	0.6	0.0207	0.1035	COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1,GSTM1->Oncogene{Bushman},chr1:110230436-110251661:+,glutathione_S-transferase_mu_1	HCC38_BREAST	0.6	0.92	0.1242	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MT-CO3--MT-ATP6	4	2	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.6	0.0414	0.0207	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC38_BREAST	0.6	1	0.0621	FALSE	189	492	56	216	0	FALSE	ACH-000276
HCC38_BREAST	PHTF1--LRIF1	3	6	PHTF1	2791	chr1:114300321:-	LRIF1	27198	chr1:111495437:-	ONLY_REF_SPLICE	YES	55	110	0.14	0.08	0.031	0.0621	PHTF1->chr1:114239453-114302111:-,putative_homeodomain_transcription_factor_1,LRIF1->chr1:111489807-111506701:-,ligand_dependent_nuclear_receptor_interacting_factor_1	HCC38_BREAST	0.08	0.14	0.0931	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	C22orf39--TCF20	4	1	C22orf39	1855	chr22:19434901:-	TCF20	43476	chr22:42557364:-	ONLY_REF_SPLICE	YES	112	40	0.04	0.11	0.0414	0.0103	C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,TCF20->chr22:42556019-42739622:-,transcription_factor_20_(AR1)	HCC38_BREAST	0.04	0.11	0.0517	TRUE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	CPSF6--C9orf3	4	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	141	532	0.03	0.01	0.0414	0.0103	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	HCC38_BREAST	0.01	0.03	0.0517	FALSE	53	99	2	44	0	FALSE	ACH-000276
HCC38_BREAST	MT-CO3--MT-ATP6	4	1	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.0414	0.0103	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC38_BREAST	0.71	1	0.0517	FALSE	189	492	56	216	0	FALSE	ACH-000276
HCC38_BREAST	ANPEP--MT-ND4L	4	0	ANPEP	16060	chr15:90328379:-	MT-ND4L	19321	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC38_BREAST	1	1	0.0414	FALSE	0	1	0	16	0	FALSE	ACH-000276
HCC38_BREAST	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC38_BREAST	1	1	0.0414	FALSE	344	821	44	306	0	FALSE	ACH-000276
HCC38_BREAST	MT-ND4--MT-ND4L	4	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC38_BREAST	1	1	0.0414	FALSE	344	821	44	306	0	FALSE	ACH-000276
HCC38_BREAST	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0414	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC38_BREAST	1	1	0.0414	TRUE	465	1949	224	605	0	FALSE	ACH-000276
HCC38_BREAST	ARHGAP35--IGSF23	1	11	ARHGAP35	4681	chr19:47425613:+	IGSF23	21123	chr19:45121387:+	ONLY_REF_SPLICE	NO	132	0	0.08	1	0.0103	0.1138	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,IGSF23->chr19:45116940-45140081:+,immunoglobulin_superfamily_member_23	HCC38_BREAST	0.08	1	0.1241	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ACBD6--RRP15	3	2	ACBD6	6261	chr1:180382501:-	RRP15	22031	chr1:218504290:+	ONLY_REF_SPLICE	YES	119	217	0.04	0.02	0.031	0.0207	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	HCC38_BREAST	0.02	0.04	0.0517	TRUE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	COL24A1--GSTM1	2	6	COL24A1	47057	chr1:86282471:-	GSTM1	66632	chr1:110232893:+	ONLY_REF_SPLICE	YES	1	7	0.89	0.53	0.0207	0.0621	COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1,GSTM1->Oncogene{Bushman},chr1:110230436-110251661:+,glutathione_S-transferase_mu_1	HCC38_BREAST	0.53	0.89	0.0828	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	COL24A1--GSTM1	1	9	COL24A1	47057	chr1:86282471:-	GSTM1	65586	chr1:110231847:+	ONLY_REF_SPLICE	YES	1	10	0.91	0.5	0.0103	0.0931	COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1,GSTM1->Oncogene{Bushman},chr1:110230436-110251661:+,glutathione_S-transferase_mu_1	HCC38_BREAST	0.5	0.91	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MT-ND6--MT-TE	3	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0.0103	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC38_BREAST	1	1	0.0413	FALSE	499	1288	110	792	0	FALSE	ACH-000276
HCC38_BREAST	MTAP--PCDH7	2	5	MTAP	9899	chr9:21854869:+	PCDH7	31779	chr4:30951742:+	ONLY_REF_SPLICE	YES	0	34	1	0.17	0.0207	0.0517	{Klijn_CCL:Breast=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,PCDH7->chr4:30722037-31148422:+,protocadherin_7	HCC38_BREAST	0.17	1	0.0724	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MTAP--PCDH7	2	5	MTAP	9899	chr9:21854869:+	PCDH7	34105	chr4:31144095:+	ONLY_REF_SPLICE	YES	0	31	1	0.18	0.0207	0.0517	{Klijn_CCL:Breast=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,PCDH7->chr4:30722037-31148422:+,protocadherin_7	HCC38_BREAST	0.18	1	0.0724	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	SPRED1--BUB1B	1	9	SPRED1	4131	chr15:38591748:+	BUB1B	23762	chr15:40462263:+	ONLY_REF_SPLICE	YES	20	139	0.33	0.07	0.0103	0.0931	SPRED1->chr15:38544527-38649450:+,sprouty_related_EVH1_domain_containing_1,BUB1B->BUB1_mitotic_checkpoint_serine/threonine_kinase_B,Oncogene{Bushman},chr15:40453224-40513337:+	HCC38_BREAST	0.07	0.33	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	ARHGAP35--IGSF23	2	4	ARHGAP35	4681	chr19:47425613:+	IGSF23	23510	chr19:45130717:+	ONLY_REF_SPLICE	YES	132	9	0.04	0.4	0.0207	0.0414	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,IGSF23->chr19:45116940-45140081:+,immunoglobulin_superfamily_member_23	HCC38_BREAST	0.04	0.4	0.0621	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	IMMP2L--AC003088.1	3	0	IMMP2L	12890	chr7:110526649:-	AC003088.1	22075	chr7:110072963:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	HCC38_BREAST	1	1	0.031	TRUE	0	1	0	2	1	TRUE	ACH-000276
HCC38_BREAST	ITGB6--RBMS1	1	8	ITGB6	18066	chr2:160993945:-	RBMS1	47674	chr2:161137875:-	ONLY_REF_SPLICE	YES	504	231	0.02	0.04	0.0103	0.0828	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[263],ITGB6->chr2:160956177-161128399:-,integrin_subunit_beta_6,RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-	HCC38_BREAST	0.02	0.04	0.0931	TRUE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	KRT7--MPHOSPH8	3	0	KRT7	5580	chr12:52632559:+	MPHOSPH8	31619	chr13:20245346:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	KRT7->chr12:52626304-52645970:+,keratin_7,MPHOSPH8->M-phase_phosphoprotein_8,chr13:20207788-20247599:+	HCC38_BREAST	1	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	L3MBTL4--AC002472.11	2	4	L3MBTL4	24110	chr18:6046727:-	AC002472.11	37062	chr22:21396992:+	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0207	0.0414	L3MBTL4->chr18:5954705-6415236:-,l(3)mbt-like_4_(Drosophila),AC002472.11->chr22:21385646-21398258:+	HCC38_BREAST	0.67	1	0.0621	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MT-CO3--MT-ATP6	3	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC38_BREAST	1	1	0.031	FALSE	189	492	56	216	0	FALSE	ACH-000276
HCC38_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC38_BREAST	1	1	0.031	FALSE	499	1288	110	792	0	FALSE	ACH-000276
HCC38_BREAST	PRR16--CTD-2334D19.1	2	4	PRR16	6887	chr5:119954260:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	166	1	0.03	0.86	0.0207	0.0414	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HCC38_BREAST	0.03	0.86	0.0621	FALSE	0	2	0	14	0	FALSE	ACH-000276
HCC38_BREAST	RP11-254I22.1--CTD-2337A12.1	3	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HCC38_BREAST	1	1	0.031	TRUE	4	2	0	28	0	FALSE	ACH-000276
HCC38_BREAST	ATP6AP1L--MSH3	2	3	ATP6AP1L	2469	chr5:81576830:+	MSH3	44541	chr5:80083384:+	ONLY_REF_SPLICE	YES	2	23	0.71	0.18	0.0207	0.031	ATP6AP1L->ATPase_H+_transporting_accessory_protein_1_like,chr5:81575281-81682796:+,MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3	HCC38_BREAST	0.18	0.71	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	IFFO2--UBR4	2	3	IFFO2	2019	chr1:19282162:-	UBR4	79245	chr1:19442131:-	ONLY_REF_SPLICE	YES	100	54	0.05	0.08	0.0207	0.031	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],IFFO2->chr1:19230775-19283180:-,intermediate_filament_family_orphan_2,UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4	HCC38_BREAST	0.05	0.08	0.0517	TRUE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	MTAP--PCDH7	1	7	MTAP	7556	chr9:21818201:+	PCDH7	30562	chr4:30921775:+	ONLY_REF_SPLICE	YES	62	0	0.11	1	0.0103	0.0724	{Klijn_CCL:Breast=1},MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,PCDH7->chr4:30722037-31148422:+,protocadherin_7	HCC38_BREAST	0.11	1	0.0827	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	OSBPL2--SS18L1	2	1	OSBPL2	5487	chr20:60839774:+	SS18L1	34232	chr20:60754238:+	ONLY_REF_SPLICE	YES	136	52	0.02	0.05	0.0207	0.0103	LOCAL_REARRANGEMENT:+:[56040],OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2,SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+	HCC38_BREAST	0.02	0.05	0.031	TRUE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	COL24A1--GSTM1	1	4	COL24A1	47057	chr1:86282471:-	GSTM1	67926	chr1:110235828:+	ONLY_REF_SPLICE	NO	1	18	0.83	0.22	0.0103	0.0414	COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1,GSTM1->Oncogene{Bushman},chr1:110230436-110251661:+,glutathione_S-transferase_mu_1	HCC38_BREAST	0.22	0.83	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	CTDSPL2--RP11-387D10.2	2	0	CTDSPL2	9442	chr15:44789336:+	RP11-387D10.2	29290	chr15:91256530:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,RP11-387D10.2->chr15:91163239-91260372:-	HCC38_BREAST	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	GPR126--VTA1	2	0	GPR126	5956	chr6:142691930:+	VTA1	42986	chr6:142525122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	HCC38_BREAST	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	L3MBTL4--AC002472.11	1	4	L3MBTL4	23083	chr18:6080880:-	AC002472.11	37062	chr22:21396992:+	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.0103	0.0414	L3MBTL4->chr18:5954705-6415236:-,l(3)mbt-like_4_(Drosophila),AC002472.11->chr22:21385646-21398258:+	HCC38_BREAST	0.62	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	METTL15--RP11-22P4.1	2	0	METTL15	1205	chr11:28129999:+	RP11-22P4.1	21552	chr11:28383484:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	NEIGHBORS[18600],METTL15->chr11:28129795-28355054:+,methyltransferase_like_15,RP11-22P4.1->chr11:28373654-28548588:+	HCC38_BREAST	1	1	0.0207	FALSE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	PTPN12--AP1G1	2	0	PTPN12	1371	chr7:77166962:+	AP1G1	33534	chr16:71808495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-	HCC38_BREAST	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	PRR16--CTD-2334D19.1	1	3	PRR16	3559	chr5:119816988:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	169	1	0.02	0.8	0.0103	0.031	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HCC38_BREAST	0.02	0.8	0.0413	FALSE	1	5	0	12	0	FALSE	ACH-000276
HCC38_BREAST	TIMM23B--LINC00843	1	3	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0103	0.031	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC38_BREAST	0.8	1	0.0413	TRUE	62	24	1	171	0	FALSE	ACH-000276
HCC38_BREAST	L3MBTL4--TUBA3GP	1	2	L3MBTL4	24110	chr18:6046727:-	TUBA3GP	37138	chr22:21421240:+	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0103	0.0207	L3MBTL4->chr18:5954705-6415236:-,l(3)mbt-like_4_(Drosophila),TUBA3GP->chr22:21419749-21424386:+,tubulin_alpha_3g_pseudogene	HCC38_BREAST	0.5	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	L3MBTL4--TUBA3GP	1	2	L3MBTL4	23083	chr18:6080880:-	TUBA3GP	37138	chr22:21421240:+	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0103	0.0207	L3MBTL4->chr18:5954705-6415236:-,l(3)mbt-like_4_(Drosophila),TUBA3GP->chr22:21419749-21424386:+,tubulin_alpha_3g_pseudogene	HCC38_BREAST	0.5	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	MED1--GSDMB	1	2	MED1	6915	chr17:37595418:-	GSDMB	30081	chr17:38068750:-	ONLY_REF_SPLICE	NO	107	39	0.03	0.07	0.0103	0.0207	MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1,GSDMB->chr17:38060848-38076107:-,gasdermin_B	HCC38_BREAST	0.03	0.07	0.031	TRUE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	RP11-820L6.1--ZNF202	1	2	RP11-820L6.1	10204	chr11:122051044:-	ZNF202	21179	chr11:123598970:-	ONLY_REF_SPLICE	YES	0	11	1	0.21	0.0103	0.0207	RP11-820L6.1->chr11:122026130-122293579:-,ZNF202->chr11:123594885-123612383:-,zinc_finger_protein_202	HCC38_BREAST	0.21	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	SLC22A1--CUTA	1	2	SLC22A1	5329	chr6:160555157:+	CUTA	16870	chr6:33384746:-	ONLY_REF_SPLICE	YES	0	299	1	0.01	0.0103	0.0207	Cosmic{samples=2,mutations=2,papers=1},SLC22A1->chr6:160542821-160579750:+,solute_carrier_family_22_member_1,CUTA->chr6:33384219-33386094:-,cutA_divalent_cation_tolerance_homolog_(E._coli)	HCC38_BREAST	0.01	1	0.031	FALSE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	TPD52--PAG1	1	2	TPD52	9139	chr8:81032050:-	PAG1	30869	chr8:81982405:-	ONLY_REF_SPLICE	YES	281	1	0.01	0.75	0.0103	0.0207	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,PAG1->chr8:81880045-82024303:-,phosphoprotein_membrane_anchor_with_glycosphingolipid_microdomains_1	HCC38_BREAST	0.01	0.75	0.031	FALSE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	VPS37A--PIGN	1	2	VPS37A	1799	chr8:17104878:+	PIGN	41017	chr18:59781872:-	ONLY_REF_SPLICE	YES	46	32	0.06	0.09	0.0103	0.0207	VPS37A->VPS37A,_ESCRT-I_subunit,chr8:17104080-17159936:+,PIGN->chr18:59710800-59854351:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_N	HCC38_BREAST	0.06	0.09	0.031	TRUE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	AC092295.4--LSR	1	1	AC092295.4	2296	chr19:37025894:+	LSR	10948	chr19:35753449:+	ONLY_REF_SPLICE	NO	0	310	1	0.01	0.0103	0.0103	AC092295.4->chr19:37019220-37026137:+,LSR->chr19:35739233-35758867:+,lipolysis_stimulated_lipoprotein_receptor	HCC38_BREAST	0.01	1	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	COL12A1--FILIP1	1	1	COL12A1	28756	chr6:75847153:-	FILIP1	68338	chr6:76072633:-	ONLY_REF_SPLICE	YES	92	2	0.02	0.5	0.0103	0.0103	LOCAL_REARRANGEMENT:-:[85808],COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1,FILIP1->chr6:76001575-76203454:-,filamin_A_interacting_protein_1	HCC38_BREAST	0.02	0.5	0.0206	TRUE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	CTC-432M15.3--AC034228.7	1	1	CTC-432M15.3	1154	chr5:131132523:-	AC034228.7	50074	chr5:131154556:-	ONLY_REF_SPLICE	YES	19	0	0.1	1	0.0103	0.0103	LOCAL_REARRANGEMENT:-:[10140],CTC-432M15.3->chr5:130761584-131132676:-,AC034228.7->chr5:131142816-131281391:-	HCC38_BREAST	0.1	1	0.0206	TRUE	0	0	0	2	0	TRUE	ACH-000276
HCC38_BREAST	EPS15--NRD1	1	1	EPS15	1130	chr1:51984871:-	NRD1	49140	chr1:52289458:-	ONLY_REF_SPLICE	NO	2	134	0.5	0.01	0.0103	0.0103	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:1=pct:0.3],Thyroid=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Caudate_(basal_ganglia)=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},EPS15->Oncogene{Bushman},chr1:51819935-51985000:-,epidermal_growth_factor_receptor_pathway_substrate_15,NRD1->chr1:52254863-52344477:-	HCC38_BREAST	0.01	0.5	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000276
HCC38_BREAST	L3MBTL4--TUBA3GP	1	1	L3MBTL4	22012	chr18:6093354:-	TUBA3GP	37138	chr22:21421240:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0103	0.0103	L3MBTL4->chr18:5954705-6415236:-,l(3)mbt-like_4_(Drosophila),TUBA3GP->chr22:21419749-21424386:+,tubulin_alpha_3g_pseudogene	HCC38_BREAST	0.5	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	LDHC--SERGEF	1	1	LDHC	1537	chr11:18434390:+	SERGEF	35821	chr11:17809960:-	ONLY_REF_SPLICE	YES	0	9	1	0.18	0.0103	0.0103	LDHC->chr11:18433854-18473605:+,lactate_dehydrogenase_C,SERGEF->chr11:17809595-18034709:-,secretion_regulating_guanine_nucleotide_exchange_factor	HCC38_BREAST	0.18	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	LDHC--SERGEF	1	1	LDHC	2655	chr11:18436848:+	SERGEF	35821	chr11:17809960:-	ONLY_REF_SPLICE	YES	0	9	1	0.18	0.0103	0.0103	LDHC->chr11:18433854-18473605:+,lactate_dehydrogenase_C,SERGEF->chr11:17809595-18034709:-,secretion_regulating_guanine_nucleotide_exchange_factor	HCC38_BREAST	0.18	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	PICALM--SYTL2	1	1	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	415	7	0	0.22	0.0103	0.0103	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	HCC38_BREAST	0	0.22	0.0206	FALSE	4	2	0	20	0	FALSE	ACH-000276
HCC38_BREAST	RP11-277A4.4--CSMD2	1	1	RP11-277A4.4	2182	chr1:32520072:-	CSMD2	13290	chr1:34312597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0103	0.0103	RP11-277A4.4->chr1:32517892-32539075:-,CSMD2->CUB_and_Sushi_multiple_domains_2,chr1:33979609-34631443:-	HCC38_BREAST	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000276
HCC38_BREAST	RP13-188A5.1--KLF8	1	1	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	11	26	0.15	0.07	0.0103	0.0103	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	HCC38_BREAST	0.07	0.15	0.0206	TRUE	10	78	6	20	0	FALSE	ACH-000276
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	17384	52	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	2	5	1	1	147.0124	0.4398	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	147.4522	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RBMS1--ITGB6	343	85	RBMS1	1506	chr2:161349800:-	ITGB6	37061	chr2:161057728:-	ONLY_REF_SPLICE	YES	38	7	0.92	0.98	2.9007	0.7188	NEIGHBORS[263],RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-,ITGB6->chr2:160956177-161128399:-,integrin_subunit_beta_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.92	0.98	3.6195	FALSE	0	0	0	1	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RBMS1--ITGB6	242	168	RBMS1	1506	chr2:161349800:-	ITGB6	33261	chr2:161114557:-	ONLY_REF_SPLICE	YES	38	0	0.92	1	2.0465	1.4207	NEIGHBORS[263],RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-,ITGB6->chr2:160956177-161128399:-,integrin_subunit_beta_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.92	1	3.4672	FALSE	0	0	0	1	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	CLPX--PARP16	201	49	CLPX	4248	chr15:65471272:-	PARP16	33927	chr15:65527161:-	ONLY_REF_SPLICE	YES	54	1	0.82	1	1.6998	0.4144	LOCAL_REARRANGEMENT:-:[49118],CLPX->caseinolytic_mitochondrial_matrix_peptidase_chaperone_subunit,chr15:65440557-65477680:-,PARP16->chr15:65526798-65592956:-,poly(ADP-ribose)_polymerase_family_member_16	GOS3_CENTRAL_NERVOUS_SYSTEM	0.82	1	2.1142	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MAZ--RP5-968D22.3	181	7	MAZ	5122	chr16:29821548:+	RP5-968D22.3	12360	chr1:168454969:-	ONLY_REF_SPLICE	YES	145	0	0.56	1	1.5307	0.0592	MAZ->MYC_associated_zinc_finger_protein,chr16:29817427-29823649:+,RP5-968D22.3->chr1:168433452-168464882:-	GOS3_CENTRAL_NERVOUS_SYSTEM	0.56	1	1.5899	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	SHISA9--U91319.1	98	17	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	34	0	0.77	1	0.8288	0.1438	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	GOS3_CENTRAL_NERVOUS_SYSTEM	0.77	1	0.9726	FALSE	4	37	0	19	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	99	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8372	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.8372	FALSE	369	2501	205	193	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RBMS1--ITGB6	71	102	RBMS1	1506	chr2:161349800:-	ITGB6	35850	chr2:161062584:-	ONLY_REF_SPLICE	YES	38	1	0.82	0.99	0.6004	0.8626	NEIGHBORS[263],RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-,ITGB6->chr2:160956177-161128399:-,integrin_subunit_beta_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.82	0.99	1.463	FALSE	0	0	0	1	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	TNS3--TBRG4	75	29	TNS3	8632	chr7:47546505:-	TBRG4	50931	chr7:45148886:-	ONLY_REF_SPLICE	YES	184	6	0.36	0.95	0.6343	0.2452	TNS3->chr7:47314752-47622156:-,tensin_3,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	GOS3_CENTRAL_NERVOUS_SYSTEM	0.36	0.95	0.8795	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	SRM--ERRFI1	69	7	SRM	2225	chr1:11118857:-	ERRFI1	14615	chr1:8064618:-	ONLY_REF_SPLICE	YES	96	0	0.44	1	0.5835	0.0592	SRM->chr1:11114641-11120081:-,spermidine_synthase,ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-	GOS3_CENTRAL_NERVOUS_SYSTEM	0.44	1	0.6427	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	70	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.592	0.0169	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.6089	FALSE	499	1288	110	792	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	64	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5412	0.0592	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.6004	FALSE	462	80	0	856	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	55	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.4651	0.093	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	GOS3_CENTRAL_NERVOUS_SYSTEM	0.99	1	0.5581	TRUE	508	994	45	981	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	7	202	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	15	0	0.93	1	0.0592	1.7083	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.93	1	1.7675	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	6	191	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	12	1	0.94	0.99	0.0507	1.6152	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.94	0.99	1.6659	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	202	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	15	0	0.93	1	0.0254	1.7083	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.93	1	1.7337	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	198	MT-ND4	1192	chrM:10951:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	YES	15	1	0.93	1	0.0338	1.6744	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.93	1	1.7082	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	195	MT-ND4	1159	chrM:10918:+	MT-ND4L	5503	chrM:10594:+	INCL_NON_REF_SPLICE	YES	13	0	0.94	1	0.0254	1.6491	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.94	1	1.6745	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	190	MT-ND4	1148	chrM:10907:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	YES	12	2	0.94	0.99	0.0254	1.6068	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.94	0.99	1.6322	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	190	MT-ND4	1109	chrM:10868:+	MT-ND4L	5463	chrM:10554:+	INCL_NON_REF_SPLICE	YES	8	0	0.96	1	0.0254	1.6068	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.96	1	1.6322	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	188	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	8	1	0.96	0.99	0.0254	1.5899	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.96	0.99	1.6153	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	VWC2--TNS3	46	8	VWC2	4382	chr7:49842436:+	TNS3	27076	chr7:47520739:-	ONLY_REF_SPLICE	YES	0	180	1	0.23	0.389	0.0677	VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2,TNS3->chr7:47314752-47622156:-,tensin_3	GOS3_CENTRAL_NERVOUS_SYSTEM	0.23	1	0.4567	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	13	133	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	4089	1	0.03	0.99	0.1099	1.1247	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.03	0.99	1.2346	FALSE	344	827	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	157	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	8	1	0.95	0.99	0.0338	1.3277	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.95	0.99	1.3615	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	157	MT-ND4	1081	chrM:10840:+	MT-ND4L	5526	chrM:10617:+	INCL_NON_REF_SPLICE	YES	7	1	0.96	0.99	0.0254	1.3277	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.96	0.99	1.3531	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	5	148	MT-ND4	1285	chrM:11044:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	20	0	0.88	1	0.0423	1.2516	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.88	1	1.2939	FALSE	344	827	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	7	133	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	3	0.96	0.98	0.0592	1.1247	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.96	0.98	1.1839	FALSE	344	821	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	GTF3C1--DCTPP1	34	16	GTF3C1	5124	chr16:27544612:-	DCTPP1	43460	chr16:30441414:-	INCL_NON_REF_SPLICE	YES	28	0	0.64	1	0.2875	0.1353	GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1,DCTPP1->chr16:30434940-30441396:-,dCTP_pyrophosphatase_1	GOS3_CENTRAL_NERVOUS_SYSTEM	0.64	1	0.4228	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	5	125	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	34	1	0.79	0.99	0.0423	1.0571	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.79	0.99	1.0994	FALSE	344	827	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	131	MT-ND4	1199	chrM:10958:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	14	1	0.91	0.99	0.0254	1.1078	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.91	0.99	1.1332	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	130	MT-ND4	1289	chrM:11048:+	MT-ND4L	5610	chrM:10701:+	INCL_NON_REF_SPLICE	NO	21	1	0.86	0.99	0.0254	1.0994	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.86	0.99	1.1248	FALSE	344	827	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	VPS37A--PCM1	32	13	VPS37A	1799	chr8:17104878:+	PCM1	29544	chr8:17793098:+	ONLY_REF_SPLICE	YES	35	37	0.56	0.55	0.2706	0.1099	VPS37A->VPS37A,_ESCRT-I_subunit,chr8:17104080-17159936:+,PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1	GOS3_CENTRAL_NERVOUS_SYSTEM	0.55	0.56	0.3805	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	124	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	26	1	0.83	0.99	0.0254	1.0486	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.83	0.99	1.074	FALSE	344	827	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	14	76	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1184	0.6427	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.7611	FALSE	369	2501	205	193	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	105	MT-ND4	1170	chrM:10929:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	14	1	0.89	0.99	0.0254	0.888	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.89	0.99	0.9134	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	7	86	MT-ND4	1144	chrM:10903:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	12	0	0.89	1	0.0592	0.7273	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.7865	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	VPS37A--PCM1	23	16	VPS37A	1799	chr8:17104878:+	PCM1	24420	chr8:17782222:+	ONLY_REF_SPLICE	YES	35	43	0.53	0.48	0.1945	0.1353	VPS37A->VPS37A,_ESCRT-I_subunit,chr8:17104080-17159936:+,PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1	GOS3_CENTRAL_NERVOUS_SYSTEM	0.48	0.53	0.3298	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	26	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	92	3	0.23	0.9	0.2199	0.0169	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	GOS3_CENTRAL_NERVOUS_SYSTEM	0.23	0.9	0.2368	TRUE	519	3926	326	965	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	92	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	15	0	0.86	1	0.0254	0.778	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.8034	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	8	72	MT-ND4	1779	chrM:11538:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	3957	1	0.02	0.99	0.0677	0.6089	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.02	0.99	0.6766	FALSE	344	827	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	88	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	NO	14	1	0.87	0.99	0.0254	0.7442	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.87	0.99	0.7696	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	14	43	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	9858	1	0.01	0.98	0.1184	0.3636	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.01	0.98	0.482	FALSE	328	800	43	304	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	23	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1945	0.0592	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.2537	FALSE	462	80	0	856	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	85	MT-ND4	1231	chrM:10990:+	MT-ND4L	5632	chrM:10723:+	INCL_NON_REF_SPLICE	YES	15	0	0.85	1	0.0254	0.7188	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.85	1	0.7442	FALSE	344	827	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	10	54	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	11	7	0.85	0.9	0.0846	0.4567	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.85	0.9	0.5413	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	9	54	MT-CO3	1126	chrM:9332:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	4	7	0.94	0.9	0.0761	0.4567	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.9	0.94	0.5328	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	21	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	65	5	0.29	0.84	0.1776	0.0423	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	GOS3_CENTRAL_NERVOUS_SYSTEM	0.29	0.84	0.2199	FALSE	59	21	0	114	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	14	32	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1184	0.2706	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.389	FALSE	369	2501	205	193	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	20	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1691	0.0254	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.1945	FALSE	499	1288	110	792	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	18	10	MT-ATP6	1516	chrM:9042:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	13	8	0.68	0.78	0.1522	0.0846	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	GOS3_CENTRAL_NERVOUS_SYSTEM	0.68	0.78	0.2368	FALSE	59	21	0	114	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	15	21	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	15	2	0.71	0.95	0.1269	0.1776	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.71	0.95	0.3045	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	20	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1691	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.1691	FALSE	369	2501	205	193	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	XPO6--GTF3C1	19	4	XPO6	16330	chr16:28157415:-	GTF3C1	42256	chr16:27540042:-	ONLY_REF_SPLICE	YES	39	34	0.37	0.4	0.1607	0.0338	XPO6->chr16:28109300-28223241:-,exportin_6,GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1	GOS3_CENTRAL_NERVOUS_SYSTEM	0.37	0.4	0.1945	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	7	51	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	42	0.98	0.58	0.0592	0.4313	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.58	0.98	0.4905	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	16	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.1353	0.1099	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GOS3_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.2452	FALSE	499	1288	110	792	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	14	20	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1184	0.1691	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.2875	FALSE	369	2501	205	193	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	62	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	5	0	0.93	1	0.0254	0.5243	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.5497	FALSE	344	821	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	5	53	MT-CO3	1155	chrM:9361:+	MT-ATP6	5330	chrM:9072:+	INCL_NON_REF_SPLICE	YES	16	7	0.78	0.89	0.0423	0.4482	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.78	0.89	0.4905	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	4	57	MT-CO3	1205	chrM:9411:+	MT-ATP6	5179	chrM:8921:+	INCL_NON_REF_SPLICE	YES	30	62	0.67	0.5	0.0338	0.482	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.5	0.67	0.5158	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	8	41	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	21	1	0.7	0.98	0.0677	0.3467	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.7	0.98	0.4144	FALSE	344	827	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	4	55	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	30	7	0.66	0.89	0.0338	0.4651	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.66	0.89	0.4989	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	3	59	MT-CO3	1484	chrM:9690:+	MT-ATP6	5242	chrM:8984:+	INCL_NON_REF_SPLICE	YES	4	17	0.94	0.78	0.0254	0.4989	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.78	0.94	0.5243	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	7	43	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	338	1	0.13	0.98	0.0592	0.3636	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.13	0.98	0.4228	FALSE	344	827	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	SRM--ERRFI1	16	7	SRM	2225	chr1:11118857:-	ERRFI1	14620	chr1:8064613:-	INCL_NON_REF_SPLICE	YES	96	0	0.19	1	0.1353	0.0592	SRM->chr1:11114641-11120081:-,spermidine_synthase,ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-	GOS3_CENTRAL_NERVOUS_SYSTEM	0.19	1	0.1945	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	3	58	MT-CO3	1138	chrM:9344:+	MT-ATP6	4905	chrM:8647:+	INCL_NON_REF_SPLICE	NO	11	18	0.85	0.77	0.0254	0.4905	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.77	0.85	0.5159	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	16	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	65	5	0.24	0.81	0.1353	0.0423	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	GOS3_CENTRAL_NERVOUS_SYSTEM	0.24	0.81	0.1776	FALSE	59	21	0	114	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	4	53	MT-CO3	1153	chrM:9359:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	NO	16	5	0.78	0.92	0.0338	0.4482	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.78	0.92	0.482	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	5	49	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	7	0.98	0.89	0.0423	0.4144	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.89	0.98	0.4567	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	4	53	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0.4482	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.482	FALSE	369	2501	205	193	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	GTF3C1--DCTPP1	14	12	GTF3C1	5124	chr16:27544612:-	DCTPP1	44386	chr16:30440488:-	ONLY_REF_SPLICE	YES	28	72	0.48	0.27	0.1184	0.1015	GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1,DCTPP1->chr16:30434940-30441396:-,dCTP_pyrophosphatase_1	GOS3_CENTRAL_NERVOUS_SYSTEM	0.27	0.48	0.2199	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	6	44	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	6	1	0.89	0.98	0.0507	0.3721	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.89	0.98	0.4228	FALSE	344	821	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	7	40	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0.3383	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.3975	FALSE	369	2501	205	193	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	10	27	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	407	2	0.08	0.95	0.0846	0.2283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.08	0.95	0.3129	FALSE	344	827	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	51	MT-ND4	1125	chrM:10884:+	MT-ND4L	5651	chrM:10742:+	INCL_NON_REF_SPLICE	YES	12	1	0.82	0.98	0.0338	0.4313	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.82	0.98	0.4651	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	6	41	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	15	1	0.76	0.98	0.0507	0.3467	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.76	0.98	0.3974	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	3	51	MT-CO3	1087	chrM:9293:+	MT-ATP6	5154	chrM:8896:+	INCL_NON_REF_SPLICE	YES	1	49	0.98	0.52	0.0254	0.4313	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.52	0.98	0.4567	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	9	27	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	16	2	0.69	0.95	0.0761	0.2283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.69	0.95	0.3044	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO2--GFAP	15	1	MT-CO2	1222	chrM:7807:+	GFAP	14155	chr17:42984391:-	INCL_NON_REF_SPLICE	YES	12082	3754	0	0	0.1269	0.0085	MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,GFAP->chr17:42982376-42994305:-,glial_fibrillary_acidic_protein	GOS3_CENTRAL_NERVOUS_SYSTEM	0	0	0.1354	FALSE	11	0	0	3	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	5	41	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	19	1	0.71	0.98	0.0423	0.3467	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.71	0.98	0.389	FALSE	344	827	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	12	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	39	68	0.34	0.23	0.1015	0.0677	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	GOS3_CENTRAL_NERVOUS_SYSTEM	0.23	0.34	0.1692	TRUE	267	562	48	632	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	40	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	14	1	0.76	0.98	0.0338	0.3383	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.76	0.98	0.3721	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	43	MT-ND4	1649	chrM:11408:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1164	1	0.04	0.98	0.0254	0.3636	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.04	0.98	0.389	FALSE	344	827	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RP11-65J3.1--DNAJC6	13	3	RP11-65J3.1	6011	chr9:132104322:+	DNAJC6	25876	chr1:65854019:+	ONLY_REF_SPLICE	YES	13	6	0.55	0.73	0.1099	0.0254	RP11-65J3.1->chr9:132094579-132121817:+,DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+	GOS3_CENTRAL_NERVOUS_SYSTEM	0.55	0.73	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	13	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1099	0.0085	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.1184	FALSE	462	80	0	856	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	13	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1099	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.1099	FALSE	369	2501	205	193	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	6	26	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	NO	0	2	1	0.94	0.0507	0.2199	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.2706	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	NOL6--GTF3C1	11	6	NOL6	12458	chr9:33462038:-	GTF3C1	24575	chr16:27518477:-	INCL_NON_REF_SPLICE	YES	16	44	0.52	0.28	0.093	0.0507	NOL6->chr9:33461439-33473928:-,nucleolar_protein_6,GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1	GOS3_CENTRAL_NERVOUS_SYSTEM	0.28	0.52	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	7	20	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	6	1	0.82	0.96	0.0592	0.1691	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.82	0.96	0.2283	FALSE	344	821	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	12	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1015	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.1015	FALSE	369	2501	205	193	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	5	27	MT-ND4	1303	chrM:11062:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	30	2	0.52	0.94	0.0423	0.2283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.52	0.94	0.2706	FALSE	344	827	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	5	27	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	20	2	0.62	0.94	0.0423	0.2283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.62	0.94	0.2706	FALSE	344	827	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	9	10	MT-ATP6	1249	chrM:8775:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	88	5	0.18	0.79	0.0761	0.0846	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	GOS3_CENTRAL_NERVOUS_SYSTEM	0.18	0.79	0.1607	FALSE	59	21	0	114	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	8	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	21	0	0.5	1	0.0677	0.1099	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.1776	FALSE	344	827	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	27	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	13	2	0.7	0.94	0.0338	0.2283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.7	0.94	0.2621	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO2--GFAP	10	2	MT-CO2	1235	chrM:7820:+	GFAP	14169	chr17:42984377:-	INCL_NON_REF_SPLICE	YES	12861	3854	0	0	0.0846	0.0169	MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,GFAP->chr17:42982376-42994305:-,glial_fibrillary_acidic_protein	GOS3_CENTRAL_NERVOUS_SYSTEM	0	0	0.1015	FALSE	11	0	0	3	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	4	26	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	7	1	0.81	0.0338	0.2199	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.81	1	0.2537	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	NR6A1--AQP3	9	6	NR6A1	1291	chr9:127533299:-	AQP3	22314	chr9:33443890:-	ONLY_REF_SPLICE	YES	1	2	0.94	0.88	0.0761	0.0507	NR6A1->chr9:127279554-127533589:-,nuclear_receptor_subfamily_6_group_A_member_1,AQP3->aquaporin_3_(Gill_blood_group),chr9:33441152-33447609:-	GOS3_CENTRAL_NERVOUS_SYSTEM	0.88	0.94	0.1268	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	COMMD1--B3GNT2	10	0	COMMD1	6915	chr2:62228117:+	B3GNT2	17072	chr2:62449347:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0846	0	NEIGHBORS[48866],COMMD1->chr2:62115859-62374382:+,copper_metabolism_domain_containing_1,B3GNT2->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_2,chr2:62423248-62451866:+	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0846	FALSE	1	6	2	5	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	10	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0846	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0846	TRUE	477	1352	189	275	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	7	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0.093	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.1522	FALSE	499	1288	110	792	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	9	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0761	0.0254	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GOS3_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.1015	FALSE	515	4851	409	746	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	26	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12	2	0.71	0.94	0.0254	0.2199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.71	0.94	0.2453	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	26	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	14	2	0.67	0.94	0.0254	0.2199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.67	0.94	0.2453	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	5	17	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0423	0.1438	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GOS3_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.1861	FALSE	499	1288	110	792	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	TRIM62--PRAMEF17	9	1	TRIM62	6647	chr1:33623854:-	PRAMEF17	12975	chr1:13716093:+	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0761	0.0085	TRIM62->Oncogene{Bushman},chr1:33611003-33647660:-,tripartite_motif_containing_62,PRAMEF17->PRAME_family_member_17,chr1:13716092-13719089:+	GOS3_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.0846	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	9	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0761	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0761	FALSE	369	2501	205	193	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	5	13	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	NO	14	0	0.56	1	0.0423	0.1099	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.56	1	0.1522	FALSE	344	827	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	4	15	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0338	0.1269	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.1607	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	19	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0254	0.1607	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GOS3_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.1861	FALSE	499	1288	110	792	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	4	14	MT-CO3	1149	chrM:9355:+	MT-ATP6	5426	chrM:9168:+	INCL_NON_REF_SPLICE	YES	14	0	0.56	1	0.0338	0.1184	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.56	1	0.1522	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	13	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	15	0	0.53	1	0.0338	0.1099	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.53	1	0.1437	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	15	0	0.53	1	0.0338	0.1099	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.53	1	0.1437	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	7	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0592	FALSE	344	821	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0592	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0592	FALSE	292	1546	117	613	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	REV3L--RPL28	7	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0592	TRUE	22	156	2	142	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	3	15	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	11	1	0.62	0.95	0.0254	0.1269	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.62	0.95	0.1523	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	5	6	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	66	6	0.14	0.65	0.0423	0.0507	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	GOS3_CENTRAL_NERVOUS_SYSTEM	0.14	0.65	0.093	FALSE	59	21	0	114	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	3	14	MT-CO3	1212	chrM:9418:+	MT-ATP6	5426	chrM:9168:+	INCL_NON_REF_SPLICE	YES	29	0	0.37	1	0.0254	0.1184	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.37	1	0.1438	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	14	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0254	0.1184	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GOS3_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.1438	FALSE	499	1288	110	792	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	5	6	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0.0507	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.093	FALSE	462	80	0	856	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	ARHGAP42--CNTN5	6	1	ARHGAP42	1180	chr11:100558563:+	CNTN5	61994	chr11:100168357:+	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0507	0.0085	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,CNTN5->chr11:98891683-100229616:+,contactin_5	GOS3_CENTRAL_NERVOUS_SYSTEM	0.64	1	0.0592	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	5	5	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	13	0	0.43	1	0.0423	0.0423	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.43	1	0.0846	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	21	0	0.43	1	0.0254	0.1099	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.43	1	0.1353	FALSE	344	827	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	6	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	6	1	0.54	0.88	0.0507	0.0085	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.54	0.88	0.0592	FALSE	344	821	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	5	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0423	0.0423	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GOS3_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.0846	FALSE	407	2205	196	549	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	NIPA2--POLA1	6	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0507	TRUE	46	1352	75	139	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	ANGPTL2--MVB12B	5	2	ANGPTL2	1569	chr9:129884594:-	MVB12B	15049	chr9:129102787:+	ONLY_REF_SPLICE	YES	0	8	1	0.47	0.0423	0.0169	ANGPTL2->angiopoietin_like_2,chr9:129849611-129885162:-,MVB12B->chr9:129089128-129269320:+,multivesicular_body_subunit_12B	GOS3_CENTRAL_NERVOUS_SYSTEM	0.47	1	0.0592	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	5	2	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0.0169	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0592	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	10	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	9	2	0.59	0.87	0.0254	0.0846	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	0.59	0.87	0.11	FALSE	344	826	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RP11-123K19.1--CCDC101	5	2	RP11-123K19.1	1252	chr9:129375728:-	CCDC101	10491	chr16:28592376:+	ONLY_REF_SPLICE	YES	0	11	1	0.39	0.0423	0.0169	RP11-123K19.1->chr9:129351873-129375979:-,CCDC101->chr16:28565236-28603111:+	GOS3_CENTRAL_NERVOUS_SYSTEM	0.39	1	0.0592	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	VWC2--TNS3	4	6	VWC2	4382	chr7:49842436:+	TNS3	29414	chr7:47481653:-	ONLY_REF_SPLICE	YES	0	213	1	0.04	0.0338	0.0507	VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2,TNS3->chr7:47314752-47622156:-,tensin_3	GOS3_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0845	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	4	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	36	80	0.2	0.1	0.0338	0.0423	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	GOS3_CENTRAL_NERVOUS_SYSTEM	0.1	0.2	0.0761	TRUE	267	562	48	632	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RAB35--UBC	5	1	RAB35	5958	chr12:120536624:-	UBC	15058	chr12:125398236:-	INCL_NON_REF_SPLICE	NO	114	1574	0.05	0	0.0423	0.0085	RAB35->RAB35,_member_RAS_oncogene_family,chr12:120532899-120555306:-,UBC->chr12:125396150-125401914:-,ubiquitin_C	GOS3_CENTRAL_NERVOUS_SYSTEM	0	0.05	0.0508	FALSE	0	0	0	1	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	4	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0.0338	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0676	FALSE	499	1288	110	792	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-TL1--MT-RNR2	5	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	FALSE	7	521	16	32	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	ARHGAP42--CNTN5	3	6	ARHGAP42	1180	chr11:100558563:+	CNTN5	52095	chr11:99941156:+	ONLY_REF_SPLICE	YES	4	0	0.69	1	0.0254	0.0507	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,CNTN5->chr11:98891683-100229616:+,contactin_5	GOS3_CENTRAL_NERVOUS_SYSTEM	0.69	1	0.0761	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MTAP--TEK	4	2	MTAP	12211	chr9:21859424:+	TEK	38168	chr9:27204909:+	ONLY_REF_SPLICE	YES	49	18	0.11	0.25	0.0338	0.0169	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,TEK->Oncogene{Bushman},TEK_receptor_tyrosine_kinase,chr9:27109139-27230173:+	GOS3_CENTRAL_NERVOUS_SYSTEM	0.11	0.25	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.38	0.0338	0.0169	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GOS3_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.0507	TRUE	458	1351	185	561	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	LMX1B--MAPKAP1	4	1	LMX1B	2127	chr9:129377848:+	MAPKAP1	40282	chr9:128206877:-	ONLY_REF_SPLICE	YES	0	78	1	0.06	0.0338	0.0085	LMX1B->LIM_homeobox_transcription_factor_1_beta,chr9:129376722-129463311:+,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	GOS3_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	NO	65	6	0.11	0.57	0.0254	0.0423	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	GOS3_CENTRAL_NERVOUS_SYSTEM	0.11	0.57	0.0677	FALSE	59	21	0	114	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RBMS1--ITGB6	1	13	RBMS1	1506	chr2:161349800:-	ITGB6	38200	chr2:161056589:-	ONLY_REF_SPLICE	NO	38	19	0.27	0.42	0.0085	0.1099	NEIGHBORS[263],RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-,ITGB6->chr2:160956177-161128399:-,integrin_subunit_beta_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.27	0.42	0.1184	FALSE	0	0	0	1	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	CALM3--MT-ATP8	4	0	CALM3	8081	chr19:47113583:+	MT-ATP8	11589	chrM:8406:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0338	FALSE	12	0	0	26	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	GFAP--MT-RNR2	4	0	GFAP	10381	chr17:42984481:-	MT-RNR2	16077	chrM:2261:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	GFAP->chr17:42982376-42994305:-,glial_fibrillary_acidic_protein,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0338	FALSE	0	2	0	1	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0.0338	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0592	FALSE	344	821	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0338	FALSE	499	1288	110	792	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0338	FALSE	369	2501	205	193	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	61	5	0.09	0.55	0.0254	0.0254	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	GOS3_CENTRAL_NERVOUS_SYSTEM	0.09	0.55	0.0508	FALSE	59	21	0	114	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	3	3	MT-CO3	1002	chrM:9208:+	MT-ATP6	5283	chrM:9025:+	INCL_NON_REF_SPLICE	YES	0	8	1	0.43	0.0254	0.0254	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.43	1	0.0508	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	3	3	MT-CO3	1003	chrM:9209:+	MT-ATP6	5283	chrM:9025:+	INCL_NON_REF_SPLICE	YES	0	8	1	0.43	0.0254	0.0254	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	0.43	1	0.0508	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MTAP--TEK	3	2	MTAP	9899	chr9:21854869:+	TEK	38168	chr9:27204909:+	ONLY_REF_SPLICE	YES	34	18	0.13	0.22	0.0254	0.0169	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,TEK->Oncogene{Bushman},TEK_receptor_tyrosine_kinase,chr9:27109139-27230173:+	GOS3_CENTRAL_NERVOUS_SYSTEM	0.13	0.22	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	TNS3--TBRG4	2	5	TNS3	8632	chr7:47546505:-	TBRG4	51135	chr7:45148682:-	ONLY_REF_SPLICE	YES	184	138	0.04	0.05	0.0169	0.0423	TNS3->chr7:47314752-47622156:-,tensin_3,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	GOS3_CENTRAL_NERVOUS_SYSTEM	0.04	0.05	0.0592	TRUE	0	0	0	2	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	COL6A1--MT-CO2	3	0	COL6A1	19101	chr21:47424288:+	MT-CO2	22977	chrM:7785:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0254	FALSE	189	492	56	216	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	0	MT-ND4	1019	chrM:10778:+	MT-ND4L	5617	chrM:10708:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0254	FALSE	344	821	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0254	FALSE	344	821	44	306	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0254	FALSE	499	1288	110	792	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0254	FALSE	499	1288	110	792	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0254	FALSE	499	1288	110	792	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0254	FALSE	499	1288	110	792	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0254	FALSE	369	2501	205	193	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	SRM--ERRFI1	1	8	SRM	2315	chr1:11118767:-	ERRFI1	14615	chr1:8064618:-	ONLY_REF_SPLICE	NO	121	0	0.07	1	0.0085	0.0677	SRM->chr1:11114641-11120081:-,spermidine_synthase,ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-	GOS3_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.0762	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	TNS3--TBRG4	3	0	TNS3	8632	chr7:47546505:-	TBRG4	54406	chr7:45145363:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	TNS3->chr7:47314752-47622156:-,tensin_3,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0254	TRUE	0	0	0	2	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	AC009961.3--WDSUB1	2	1	AC009961.3	7019	chr2:160527219:-	WDSUB1	11460	chr2:160139604:-	ONLY_REF_SPLICE	YES	0	35	1	0.08	0.0169	0.0085	AC009961.3->chr2:160527219-160568946:-,WDSUB1->WD_repeat,_sterile_alpha_motif_and_U-box_domain_containing_1,chr2:160092304-160143310:-	GOS3_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	7	0	0.3	1	0.0169	0.0085	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GOS3_CENTRAL_NERVOUS_SYSTEM	0.3	1	0.0254	FALSE	164	806	69	479	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	2	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	21	0.75	0.12	0.0169	0.0085	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	GOS3_CENTRAL_NERVOUS_SYSTEM	0.12	0.75	0.0254	FALSE	141	264	50	91	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	CANX--RP11-1379J22.5	2	0	CANX	11365	chr5:179137066:+	RP11-1379J22.5	27899	chr5:179091324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	LOCAL_REARRANGEMENT:+:[14196],CANX->calnexin,chr5:179105629-179157926:+,RP11-1379J22.5->chr5:179084763-179091433:+	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	GTF3C1--DCTPP1	1	4	GTF3C1	4027	chr16:27549105:-	DCTPP1	44386	chr16:30440488:-	ONLY_REF_SPLICE	YES	45	72	0.1	0.06	0.0085	0.0338	GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1,DCTPP1->chr16:30434940-30441396:-,dCTP_pyrophosphatase_1	GOS3_CENTRAL_NERVOUS_SYSTEM	0.06	0.1	0.0423	TRUE	0	0	0	2	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	GTF3C1--DCTPP1	1	4	GTF3C1	5124	chr16:27544612:-	DCTPP1	45497	chr16:30435854:-	ONLY_REF_SPLICE	YES	28	221	0.15	0.02	0.0085	0.0338	GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1,DCTPP1->chr16:30434940-30441396:-,dCTP_pyrophosphatase_1	GOS3_CENTRAL_NERVOUS_SYSTEM	0.02	0.15	0.0423	TRUE	0	0	0	1	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	PVT1--MYC	2	0	PVT1	1202	chr8:128806980:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0169	TRUE	3	14	0	24	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	18992	chr12:23999127:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0169	TRUE	3	4	0	10	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	TPD52L2--HSPA5	2	0	TPD52L2	1142	chr20:62496737:+	HSPA5	15130	chr9:128003609:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	TPD52L2->chr20:62496596-62522898:+,tumor_protein_D52_like_2,HSPA5->Oncogene{Bushman},chr9:127997132-128003609:-,heat_shock_protein_family_A_(Hsp70)_member_5	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	ZNF251--CHMP1A	2	0	ZNF251	3735	chr8:145979068:-	CHMP1A	15210	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Aorta=1,Colon_-_Sigmoid=1,Cells_-_Transformed_fibroblasts=1,Brain_-_Amygdala=1},ZNF251->chr8:145946298-145981802:-,zinc_finger_protein_251,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	GOS3_CENTRAL_NERVOUS_SYSTEM	1	1	0.0169	TRUE	3	5	0	3	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	43	1	0.07	0.0085	0.0169	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GOS3_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.0254	TRUE	465	1949	224	605	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	BBS9--C7orf69	1	1	BBS9	29146	chr7:33573788:+	C7orf69	35698	chr7:47853024:+	ONLY_REF_SPLICE	YES	15	1	0.12	0.67	0.0085	0.0085	BBS9->Bardet-Biedl_syndrome_9,chr7:33168856-33645680:+,C7orf69->chr7:47834889-47859445:+,chromosome_7_open_reading_frame_69	GOS3_CENTRAL_NERVOUS_SYSTEM	0.12	0.67	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	PKP4--GPD2	1	1	PKP4	8477	chr2:159459616:+	GPD2	45331	chr2:157406120:+	ONLY_REF_SPLICE	YES	57	53	0.03	0.04	0.0085	0.0085	PKP4->chr2:159313476-159539391:+,plakophilin_4,GPD2->chr2:157291802-157470247:+,glycerol-3-phosphate_dehydrogenase_2	GOS3_CENTRAL_NERVOUS_SYSTEM	0.03	0.04	0.017	TRUE	0	0	0	1	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RAB35--UBC	1	1	RAB35	1904	chr12:120554403:-	UBC	14974	chr12:125398320:-	ONLY_REF_SPLICE	YES	58	149	0.03	0.01	0.0085	0.0085	RAB35->RAB35,_member_RAS_oncogene_family,chr12:120532899-120555306:-,UBC->chr12:125396150-125401914:-,ubiquitin_C	GOS3_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	21	1	0.09	0.0085	0.0085	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	GOS3_CENTRAL_NERVOUS_SYSTEM	0.09	1	0.017	FALSE	49	120	16	70	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	SHISA9--U91319.1	1	1	SHISA9	7683	chr16:13010672:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	38	0	0.05	1	0.0085	0.0085	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	GOS3_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.017	FALSE	2	8	0	8	0	FALSE	ACH-000027
GOS3_CENTRAL_NERVOUS_SYSTEM	SHROOM3--PAPSS1	1	1	SHROOM3	2121	chr4:77357373:+	PAPSS1	46139	chr4:108553016:-	ONLY_REF_SPLICE	YES	41	259	0.05	0.01	0.0085	0.0085	SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3,PAPSS1->3'-phosphoadenosine_5'-phosphosulfate_synthase_1,chr4:108511433-108641608:-	GOS3_CENTRAL_NERVOUS_SYSTEM	0.01	0.05	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000027
HOS_BONE	PAFAH1B2--FOXR1	1480	716	PAFAH1B2	2240	chr11:117023244:+	FOXR1	18967	chr11:118849492:+	ONLY_REF_SPLICE	YES	411	35	0.84	0.98	17.1157	8.2803	Mitelman{Neurbl=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	HOS_BONE	0.84	0.98	25.396	TRUE	0	0	0	2	0	TRUE	ACH-000613
HOS_BONE	PAFAH1B2--FOXR1	132	371	PAFAH1B2	1152	chr11:117015134:+	FOXR1	18967	chr11:118849492:+	ONLY_REF_SPLICE	YES	223	35	0.69	0.93	1.5265	4.2905	Mitelman{Neurbl=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	HOS_BONE	0.69	0.93	5.817	TRUE	0	0	0	3	0	TRUE	ACH-000613
HOS_BONE	SIK3--COLCA1	128	24	SIK3	1295	chr11:116968859:-	COLCA1	38462	chr11:111169391:-	ONLY_REF_SPLICE	YES	14	1	0.92	0.99	1.4803	0.2776	SIK3->Oncogene{Bushman},SIK_family_kinase_3,chr11:116714118-116969153:-,COLCA1->chr11:111164114-111175770:-,colorectal_cancer_associated_1	HOS_BONE	0.92	0.99	1.7579	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	TIMM23B--LINC00843	104	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2027	0.3122	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HOS_BONE	1	1	1.5149	TRUE	508	994	45	981	0	FALSE	ACH-000613
HOS_BONE	PAFAH1B2--FOXR1	3	372	PAFAH1B2	2240	chr11:117023244:+	FOXR1	19142	chr11:118849667:+	ONLY_REF_SPLICE	YES	411	54	0.48	0.87	0.0347	4.302	Mitelman{Neurbl=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	HOS_BONE	0.48	0.87	4.3367	TRUE	0	0	0	2	0	TRUE	ACH-000613
HOS_BONE	TTC3--EPHA5	65	23	TTC3	7596	chr21:38459701:+	EPHA5	68163	chr4:66509145:-	ONLY_REF_SPLICE	YES	22	4	0.8	0.96	0.7517	0.266	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,EPHA5->ArcherDX_panel,EPH_receptor_A5,FoundationOne_panel,chr4:66185281-66536213:-	HOS_BONE	0.8	0.96	1.0177	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	TIMM23--RP11-464F9.1	62	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	267	3	0.19	0.95	0.717	0.0116	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HOS_BONE	0.19	0.95	0.7286	TRUE	519	3926	326	965	0	FALSE	ACH-000613
HOS_BONE	DPYSL3--FMNL2	48	36	DPYSL3	1579	chr5:146889041:-	FMNL2	38926	chr2:153471365:+	ONLY_REF_SPLICE	YES	141	40	0.37	0.68	0.5551	0.4163	DPYSL3->chr5:146770374-146889619:-,dihydropyrimidinase_like_3,FMNL2->chr2:153191751-153506348:+,formin_like_2	HOS_BONE	0.37	0.68	0.9714	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	PAFAH1B2--FOXR1	5	195	PAFAH1B2	1152	chr11:117015134:+	FOXR1	19142	chr11:118849667:+	ONLY_REF_SPLICE	YES	223	54	0.47	0.79	0.0578	2.2551	Mitelman{Neurbl=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	HOS_BONE	0.47	0.79	2.3129	TRUE	0	0	0	3	0	TRUE	ACH-000613
HOS_BONE	PAFAH1B2--FOXR1	3	195	PAFAH1B2	2240	chr11:117023244:+	FOXR1	19200	chr11:118849725:+	INCL_NON_REF_SPLICE	YES	411	216	0.33	0.48	0.0347	2.2551	Mitelman{Neurbl=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	HOS_BONE	0.33	0.48	2.2898	TRUE	0	0	0	2	0	TRUE	ACH-000613
HOS_BONE	EXOC2--MET	50	6	EXOC2	1099	chr6:693019:-	MET	44972	chr7:116395409:+	ONLY_REF_SPLICE	YES	18	50	0.76	0.53	0.5782	0.0694	EXOC2->chr6:485133-693117:-,exocyst_complex_component_2,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HOS_BONE	0.53	0.76	0.6476	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	MT-TA--MT-TC	36	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4163	0.0463	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HOS_BONE	1	1	0.4626	FALSE	462	80	0	856	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ND4L	3	133	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	621	0	0.18	1	0.0347	1.5381	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HOS_BONE	0.18	1	1.5728	FALSE	344	827	44	306	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ND4L	3	131	MT-ND4	1222	chrM:10981:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	31	0	0.81	1	0.0347	1.515	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HOS_BONE	0.81	1	1.5497	FALSE	344	827	44	306	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ND4L	3	130	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	15	0	0.9	1	0.0347	1.5034	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HOS_BONE	0.9	1	1.5381	FALSE	344	826	44	306	0	FALSE	ACH-000613
HOS_BONE	PAFAH1B2--CCDC84	23	40	PAFAH1B2	2240	chr11:117023244:+	CCDC84	17966	chr11:118869140:+	ONLY_REF_SPLICE	YES	411	203	0.13	0.24	0.266	0.4626	{Klijn_CCL:Sarcomatoid=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,CCDC84->chr11:118868852-118886501:+,coiled-coil_domain_containing_84	HOS_BONE	0.13	0.24	0.7286	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	ZNF654--HMGB2	32	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3701	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HOS_BONE	1	1	0.3701	TRUE	0	0	0	518	0	FALSE	ACH-000613
HOS_BONE	MT-ND5--MT-ATP8	31	3	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2124	7	0.02	0.83	0.3585	0.0347	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0.02	0.83	0.3932	FALSE	43	37	8	105	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ND4L	7	90	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	0	0.94	1	0.081	1.0408	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HOS_BONE	0.94	1	1.1218	FALSE	344	821	44	306	0	FALSE	ACH-000613
HOS_BONE	RP11-123O10.4--GRIP1	25	12	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2891	0.1388	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HOS_BONE	1	1	0.4279	FALSE	416	2512	207	587	0	FALSE	ACH-000613
HOS_BONE	PAFAH1B2--CCDC84	22	18	PAFAH1B2	2240	chr11:117023244:+	CCDC84	18547	chr11:118869721:+	ONLY_REF_SPLICE	YES	411	116	0.09	0.26	0.2544	0.2082	{Klijn_CCL:Sarcomatoid=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,CCDC84->chr11:118868852-118886501:+,coiled-coil_domain_containing_84	HOS_BONE	0.09	0.26	0.4626	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	MT-ND5--MT-ATP8	24	6	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	8	0	0.79	1	0.2776	0.0694	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0.79	1	0.347	FALSE	43	37	8	105	0	FALSE	ACH-000613
HOS_BONE	HSP90AB1--MT-RNR2	24	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2776	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	1	1	0.2776	FALSE	13	9	0	364	0	FALSE	ACH-000613
HOS_BONE	PLXDC1--TAF13	24	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2776	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HOS_BONE	1	1	0.2776	TRUE	7	10	0	216	0	FALSE	ACH-000613
HOS_BONE	UBASH3B--IL10RA	21	12	UBASH3B	1536	chr11:122526918:+	IL10RA	30431	chr11:117859097:+	ONLY_REF_SPLICE	YES	37	35	0.47	0.49	0.2429	0.1388	UBASH3B->chr11:122526383-122685181:+,ubiquitin_associated_and_SH3_domain_containing_B,IL10RA->chr11:117857063-117872196:+,interleukin_10_receptor_subunit_alpha	HOS_BONE	0.47	0.49	0.3817	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO2	23	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	45	3	0.37	0.9	0.266	0.0347	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HOS_BONE	0.37	0.9	0.3007	FALSE	59	21	0	114	0	FALSE	ACH-000613
HOS_BONE	PAFAH1B2--CCDC84	14	29	PAFAH1B2	1152	chr11:117015134:+	CCDC84	17966	chr11:118869140:+	ONLY_REF_SPLICE	YES	223	203	0.16	0.17	0.1619	0.3354	{Klijn_CCL:Sarcomatoid=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,CCDC84->chr11:118868852-118886501:+,coiled-coil_domain_containing_84	HOS_BONE	0.16	0.17	0.4973	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	PAFAH1B2--CCDC84	17	11	PAFAH1B2	1152	chr11:117015134:+	CCDC84	18547	chr11:118869721:+	ONLY_REF_SPLICE	YES	223	116	0.11	0.19	0.1966	0.1272	{Klijn_CCL:Sarcomatoid=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,CCDC84->chr11:118868852-118886501:+,coiled-coil_domain_containing_84	HOS_BONE	0.11	0.19	0.3238	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	RP11-680G10.1--GSE1	18	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	19	1	0.56	0.2082	0.0694	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HOS_BONE	0.56	1	0.2776	TRUE	458	1351	185	561	0	FALSE	ACH-000613
HOS_BONE	PAFAH1B2--FOXR1	3	63	PAFAH1B2	1155	chr11:117015137:+	FOXR1	19263	chr11:118849788:+	INCL_NON_REF_SPLICE	YES	272	266	0.2	0.2	0.0347	0.7286	Mitelman{Neurbl=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	HOS_BONE	0.2	0.2	0.7633	TRUE	0	0	0	3	0	TRUE	ACH-000613
HOS_BONE	MT-ND4--MT-ND4L	12	24	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6343	0	0.01	1	0.1388	0.2776	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HOS_BONE	0.01	1	0.4164	FALSE	344	827	44	306	0	FALSE	ACH-000613
HOS_BONE	UBASH3B--IL10RA	15	12	UBASH3B	1536	chr11:122526918:+	IL10RA	28733	chr11:117857399:+	ONLY_REF_SPLICE	YES	37	19	0.42	0.59	0.1735	0.1388	UBASH3B->chr11:122526383-122685181:+,ubiquitin_associated_and_SH3_domain_containing_B,IL10RA->chr11:117857063-117872196:+,interleukin_10_receptor_subunit_alpha	HOS_BONE	0.42	0.59	0.3123	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	NPM1P24--SET	16	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.185	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HOS_BONE	1	1	0.185	TRUE	0	0	0	434	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ND4L	5	42	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.0578	0.4857	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HOS_BONE	0.89	1	0.5435	FALSE	344	821	44	306	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ND4L	9	24	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	4796	0	0.01	1	0.1041	0.2776	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HOS_BONE	0.01	1	0.3817	FALSE	344	827	44	306	0	FALSE	ACH-000613
HOS_BONE	CHCHD3--RP1-309H15.2	11	12	CHCHD3	2325	chr7:132754902:-	RP1-309H15.2	20719	chr6:22594062:-	ONLY_REF_SPLICE	YES	289	0	0.07	1	0.1272	0.1388	CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,RP1-309H15.2->chr6:22589366-22594062:-	HOS_BONE	0.07	1	0.266	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	MT-ND3--MT-ATP8	14	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1619	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	1	1	0.1619	FALSE	351	233	23	137	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ND4L	6	32	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8703	0	0	1	0.0694	0.3701	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HOS_BONE	0	1	0.4395	FALSE	328	800	43	304	0	FALSE	ACH-000613
HOS_BONE	TTC7A--FSHR	12	6	TTC7A	11117	chr2:47206046:+	FSHR	36088	chr2:49295429:-	ONLY_REF_SPLICE	YES	18	0	0.5	1	0.1388	0.0694	{Klijn_CCL:Sarcomatoid=1},TTC7A->chr2:47143296-47303276:+,tetratricopeptide_repeat_domain_7A,FSHR->chr2:49189296-49381676:-,follicle_stimulating_hormone_receptor	HOS_BONE	0.5	1	0.2082	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	RP11-680G10.1--GSE1	12	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	36	1	0.32	0.1388	0.0578	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HOS_BONE	0.32	1	0.1966	TRUE	465	1949	224	605	0	FALSE	ACH-000613
HOS_BONE	HSP90AB1--MT-RNR2	13	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1503	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	1	1	0.1503	FALSE	13	9	0	364	0	FALSE	ACH-000613
HOS_BONE	MT-ND5--MT-ATP8	12	2	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4812	65	0	0.18	0.1388	0.0231	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	0.18	0.1619	FALSE	43	37	8	105	0	FALSE	ACH-000613
HOS_BONE	MT-ND5--MT-ATP8	10	10	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1156	0.1156	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	1	1	0.2312	FALSE	43	37	8	105	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO1	12	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	7837	16721	0	0	0.1388	0.0116	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOS_BONE	0	0	0.1504	FALSE	183	104	9	328	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO2	11	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	35	1	0.29	0.93	0.1272	0.0347	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HOS_BONE	0.29	0.93	0.1619	FALSE	59	21	0	114	0	FALSE	ACH-000613
HOS_BONE	MTMR3--CABP7	9	10	MTMR3	1205	chr22:30279348:+	CABP7	34083	chr22:30123651:+	ONLY_REF_SPLICE	YES	18	1	0.51	0.95	0.1041	0.1156	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,CABP7->calcium_binding_protein_7,chr22:30116073-30127828:+	HOS_BONE	0.51	0.95	0.2197	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	10	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11372	7	0	0.67	0.1156	0.0463	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	0.67	0.1619	FALSE	231	217	16	283	0	FALSE	ACH-000613
HOS_BONE	TANC1--LINC00161	11	0	TANC1	4533	chr2:159954346:+	LINC00161	40366	chr21:29912375:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1272	0	TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,LINC00161->chr21:29911640-29912677:+,long_intergenic_non-protein_coding_RNA_161	HOS_BONE	1	1	0.1272	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	MT-ND4--MT-ND4L	3	29	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0347	0.3354	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HOS_BONE	0.97	1	0.3701	FALSE	344	821	44	306	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO2	9	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	45	1	0.21	0.92	0.1041	0.0347	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HOS_BONE	0.21	0.92	0.1388	FALSE	59	21	0	114	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO2	9	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	45	2	0.21	0.86	0.1041	0.0347	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HOS_BONE	0.21	0.86	0.1388	FALSE	59	21	0	114	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-RNR2	9	2	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	9498	0	0	1	0.1041	0.0231	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	0	1	0.1272	FALSE	63	17	1	58	0	FALSE	ACH-000613
HOS_BONE	C15orf57--CBX3	8	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	50	25	0.21	0.34	0.0925	0.0578	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HOS_BONE	0.21	0.34	0.1503	TRUE	267	562	48	632	0	FALSE	ACH-000613
HOS_BONE	COL1A1--NPM1	8	4	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	1900	0	0.01	1	0.0925	0.0463	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HOS_BONE	0.01	1	0.1388	TRUE	0	0	0	31	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ND4L	3	23	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12	0	0.68	1	0.0347	0.266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HOS_BONE	0.68	1	0.3007	FALSE	344	826	44	306	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ND4L	5	14	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	26	0	0.42	1	0.0578	0.1619	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HOS_BONE	0.42	1	0.2197	FALSE	344	826	44	306	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-RNR2	8	1	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	9094	8212	0	0	0.0925	0.0116	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	0	0	0.1041	FALSE	63	17	1	58	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	8	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11359	7	0	0.56	0.0925	0.0116	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	0.56	0.1041	FALSE	231	205	14	283	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0925	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	1	1	0.0925	FALSE	230	198	14	283	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	6	8	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	10449	203	0	0.06	0.0694	0.0925	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	0.06	0.1619	FALSE	231	217	16	283	0	FALSE	ACH-000613
HOS_BONE	MT-TA--MT-TC	7	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.081	0.0463	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HOS_BONE	1	1	0.1273	FALSE	462	80	0	856	0	FALSE	ACH-000613
HOS_BONE	CADM1--SYT12	7	2	CADM1	12738	chr11:115088612:-	SYT12	36503	chr11:66789340:+	ONLY_REF_SPLICE	YES	51	0	0.15	1	0.081	0.0231	CADM1->cell_adhesion_molecule_1,chr11:115039938-115375675:-,SYT12->chr11:66774249-66818334:+,synaptotagmin_12	HOS_BONE	0.15	1	0.1041	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	MT-ND5--MT-ND1	6	6	MT-ND5	2712	chrM:14048:+	MT-ND1	5828	chrM:3322:+	INCL_NON_REF_SPLICE	YES	25	0	0.32	1	0.0694	0.0694	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[8075],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HOS_BONE	0.32	1	0.1388	FALSE	7	3	0	4	0	FALSE	ACH-000613
HOS_BONE	INPP5A--C10orf91	7	1	INPP5A	1352	chr10:134351675:+	C10orf91	23260	chr10:134259200:+	ONLY_REF_SPLICE	YES	2	2	0.8	0.8	0.081	0.0116	LOCAL_REARRANGEMENT:+:[88412],INPP5A->chr10:134351324-134596979:+,inositol_polyphosphate-5-phosphatase_A,C10orf91->chr10:134257831-134262912:+,chromosome_10_open_reading_frame_91	HOS_BONE	0.8	0.8	0.0926	TRUE	0	1	0	1	1	TRUE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO1	7	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8302	18715	0	0	0.081	0.0116	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOS_BONE	0	0	0.0926	FALSE	183	104	9	328	0	FALSE	ACH-000613
HOS_BONE	MT-ND5--MT-ATP8	4	13	MT-ND5	2792	chrM:14128:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0.1503	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	1	1	0.1966	FALSE	43	37	8	105	0	FALSE	ACH-000613
HOS_BONE	MT-ND5--MT-ATP8	4	13	MT-ND5	2795	chrM:14131:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0.1503	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	1	1	0.1966	FALSE	43	37	8	105	0	FALSE	ACH-000613
HOS_BONE	MT-ND5--MT-ATP8	7	1	MT-ND5	1795	chrM:13131:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1920	65	0	0.11	0.081	0.0116	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	0.11	0.0926	FALSE	43	37	8	105	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	5	8	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10449	65	0	0.17	0.0578	0.0925	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	0.17	0.1503	FALSE	231	217	16	283	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	6	4	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	12859	0	0	1	0.0694	0.0463	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	1	0.1157	FALSE	231	217	16	283	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	6	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10943	65	0	0.13	0.0694	0.0463	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	0.13	0.1157	FALSE	231	217	16	283	0	FALSE	ACH-000613
HOS_BONE	PKNOX2--CNTN5	7	0	PKNOX2	1090	chr11:125034672:+	CNTN5	36334	chr11:99872766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.081	0	PKNOX2->PBX/knotted_1_homeobox_2,chr11:125034583-125303285:+,CNTN5->chr11:98891683-100229616:+,contactin_5	HOS_BONE	1	1	0.081	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	REV3L--RPL28	7	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.081	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	HOS_BONE	1	1	0.081	TRUE	22	156	2	142	0	FALSE	ACH-000613
HOS_BONE	EXOC2--MET	5	7	EXOC2	3321	chr6:679367:-	MET	44972	chr7:116395409:+	INCL_NON_REF_SPLICE	YES	39	50	0.24	0.19	0.0578	0.081	EXOC2->chr6:485133-693117:-,exocyst_complex_component_2,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HOS_BONE	0.19	0.24	0.1388	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO1	6	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9836	18715	0	0	0.0694	0.0347	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOS_BONE	0	0	0.1041	FALSE	183	104	9	328	0	FALSE	ACH-000613
HOS_BONE	MT-ND5--MT-ATP8	4	11	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0.1272	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	1	1	0.1735	FALSE	43	37	8	105	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-RNR2	6	2	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	9498	8281	0	0	0.0694	0.0231	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	0	0	0.0925	FALSE	63	17	1	58	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	4	10	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1785	65	0.01	0.18	0.0463	0.1156	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0.01	0.18	0.1619	FALSE	216	209	16	281	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ND4L	3	14	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	70	0	0.2	1	0.0347	0.1619	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HOS_BONE	0.2	1	0.1966	FALSE	344	827	44	306	0	FALSE	ACH-000613
HOS_BONE	MT-ND5--MT-ATP8	4	10	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0.1156	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	1	1	0.1619	FALSE	43	37	8	105	0	FALSE	ACH-000613
HOS_BONE	RP11-123O10.4--GRIP1	5	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0578	0.0694	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HOS_BONE	1	1	0.1272	FALSE	93	270	15	244	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO1	4	9	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	1398	15747	0.01	0	0.0463	0.1041	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOS_BONE	0	0.01	0.1504	FALSE	183	104	9	328	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO1	6	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	8290	18378	0	0	0.0694	0.0116	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOS_BONE	0	0	0.081	FALSE	183	104	9	328	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	5	5	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11118	0	0	1	0.0578	0.0578	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	1	0.1156	FALSE	231	217	16	283	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO1	4	8	MT-ATP6	1532	chrM:9058:+	MT-CO1	5199	chrM:6421:+	INCL_NON_REF_SPLICE	YES	3534	16095	0	0	0.0463	0.0925	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOS_BONE	0	0	0.1388	FALSE	183	104	9	328	0	FALSE	ACH-000613
HOS_BONE	MT-ND5--MT-ATP8	4	8	MT-ND5	2749	chrM:14085:+	MT-ATP8	5896	chrM:8449:+	INCL_NON_REF_SPLICE	YES	5	0	0.71	1	0.0463	0.0925	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0.71	1	0.1388	FALSE	43	37	8	105	0	FALSE	ACH-000613
HOS_BONE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0694	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HOS_BONE	1	1	0.0694	FALSE	462	80	0	856	0	FALSE	ACH-000613
HOS_BONE	RCC1--FAM192A	6	0	RCC1	2175	chr1:28834672:+	FAM192A	24869	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0694	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	HOS_BONE	1	1	0.0694	TRUE	0	3	0	3	0	TRUE	ACH-000613
HOS_BONE	MT-ND5--MT-ATP8	4	7	MT-ND5	2764	chrM:14100:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	NO	3	65	0.79	0.14	0.0463	0.081	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0.14	0.79	0.1273	FALSE	43	37	8	105	0	FALSE	ACH-000613
HOS_BONE	MT-ND5--MT-ND1	4	7	MT-ND5	2793	chrM:14129:+	MT-ND1	5830	chrM:3324:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0.081	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[8075],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HOS_BONE	1	1	0.1273	FALSE	7	3	0	4	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO2	5	2	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	17	1	0.29	0.88	0.0578	0.0231	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HOS_BONE	0.29	0.88	0.0809	FALSE	59	21	0	114	0	FALSE	ACH-000613
HOS_BONE	MT-CO1--MT-RNR2	5	2	MT-CO1	1585	chrM:6488:+	MT-RNR2	6124	chrM:2252:+	INCL_NON_REF_SPLICE	YES	15542	8206	0	0	0.0578	0.0231	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	0	0	0.0809	FALSE	44	51	6	21	0	FALSE	ACH-000613
HOS_BONE	ERG--LINC00240	5	1	ERG	4447	chr21:39947586:-	LINC00240	37014	chr6:26991033:+	ONLY_REF_SPLICE	YES	2	1	0.75	0.86	0.0578	0.0116	ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog,LINC00240->chr6:26924771-26991703:+,long_intergenic_non-protein_coding_RNA_240	HOS_BONE	0.75	0.86	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	9104	8237	0	0	0.0578	0.0116	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	0	0	0.0694	FALSE	63	17	1	58	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ND4L	5	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0.0116	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HOS_BONE	1	1	0.0694	FALSE	344	821	44	306	0	FALSE	ACH-000613
HOS_BONE	MT-ND5--MT-ATP8	4	5	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18	65	0.33	0.12	0.0463	0.0578	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0.12	0.33	0.1041	FALSE	43	37	8	105	0	FALSE	ACH-000613
HOS_BONE	MT-ND5--MT-ATP8	3	9	MT-ND5	2813	chrM:14149:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	7	1	0.63	0.0347	0.1041	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0.63	1	0.1388	FALSE	43	37	8	105	0	FALSE	ACH-000613
HOS_BONE	NPM1P24--SET	5	1	NPM1P24	1535	chr10:74677758:-	SET	9005	chr9:131452900:+	INCL_NON_REF_SPLICE	NO	48	910	0.11	0.01	0.0578	0.0116	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HOS_BONE	0.01	0.11	0.0694	FALSE	0	0	0	1	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	1	1	0.0578	FALSE	63	17	1	58	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1110	chrM:8636:+	MT-RNR2	5247	chrM:2236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	1	1	0.0578	FALSE	63	17	1	58	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	1	1	0.0578	FALSE	63	17	1	58	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1121	chrM:8647:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	1	1	0.0578	FALSE	63	17	1	58	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	3	8	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	11698	0	0	1	0.0347	0.0925	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	1	0.1272	FALSE	231	217	16	283	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	3	8	MT-ND4	1988	chrM:11747:+	MT-ATP8	5470	chrM:8457:+	INCL_NON_REF_SPLICE	YES	10893	0	0	1	0.0347	0.0925	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	1	0.1272	FALSE	231	217	16	283	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	3	8	MT-ND4	1852	chrM:11611:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	11375	0	0	1	0.0347	0.0925	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	1	0.1272	FALSE	231	217	16	283	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	3	8	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	11394	0	0	1	0.0347	0.0925	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	1	0.1272	FALSE	231	217	16	283	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	5	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	1	1	0.0578	FALSE	230	198	14	283	0	FALSE	ACH-000613
HOS_BONE	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HOS_BONE	1	1	0.0578	FALSE	0	0	0	189	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO1	4	3	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	8895	0	0	1	0.0463	0.0347	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOS_BONE	0	1	0.081	FALSE	182	97	9	327	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO1	4	3	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	9743	16740	0	0	0.0463	0.0347	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOS_BONE	0	0	0.081	FALSE	183	104	9	328	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	3	7	MT-ND4	2320	chrM:12079:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	1	507	0.91	0.02	0.0347	0.081	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0.02	0.91	0.1157	FALSE	209	205	15	279	0	FALSE	ACH-000613
HOS_BONE	CASK--RP11-173M1.4	4	2	CASK	2647	chrX:41712368:-	RP11-173M1.4	44854	chr17:25673954:+	ONLY_REF_SPLICE	YES	61	0	0.09	1	0.0463	0.0231	CASK->calcium/calmodulin-dependent_serine_protein_kinase_(MAGUK_family),chrX:41374187-41782716:-,RP11-173M1.4->chr17:25660282-25675517:+	HOS_BONE	0.09	1	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO2	4	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	28	2	0.18	0.75	0.0463	0.0231	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HOS_BONE	0.18	0.75	0.0694	FALSE	59	21	0	114	0	FALSE	ACH-000613
HOS_BONE	MT-CO1--MT-RNR2	4	2	MT-CO1	1453	chrM:6356:+	MT-RNR2	6134	chrM:2262:+	INCL_NON_REF_SPLICE	YES	15952	8155	0	0	0.0463	0.0231	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	0	0	0.0694	FALSE	44	51	6	21	0	FALSE	ACH-000613
HOS_BONE	MT-CO1--MT-RNR2	4	2	MT-CO1	1704	chrM:6607:+	MT-RNR2	6119	chrM:2247:+	INCL_NON_REF_SPLICE	YES	17886	8043	0	0	0.0463	0.0231	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	0	0	0.0694	FALSE	44	51	6	21	0	FALSE	ACH-000613
HOS_BONE	C15orf57--CBX3	4	1	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	45	26	0.1	0.16	0.0463	0.0116	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HOS_BONE	0.1	0.16	0.0579	TRUE	267	562	48	632	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8148	18715	0	0	0.0463	0.0116	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOS_BONE	0	0	0.0579	FALSE	183	104	9	328	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO2	4	1	MT-ATP6	1142	chrM:8668:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	35	8	0.12	0.38	0.0463	0.0116	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HOS_BONE	0.12	0.38	0.0579	FALSE	59	21	0	114	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1172	chrM:8698:+	MT-RNR2	5313	chrM:2302:+	INCL_NON_REF_SPLICE	YES	10185	9585	0	0	0.0463	0.0116	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	0	0	0.0579	FALSE	63	17	1	58	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	3	5	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	11396	772	0	0.01	0.0347	0.0578	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	0.01	0.0925	FALSE	231	217	16	283	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	3	5	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	11331	0	0	1	0.0347	0.0578	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	1	0.0925	FALSE	231	217	16	283	0	FALSE	ACH-000613
HOS_BONE	MT-ND5--MT-ATP8	3	5	MT-ND5	2221	chrM:13557:+	MT-ATP8	5839	chrM:8392:+	INCL_NON_REF_SPLICE	YES	2193	0	0	1	0.0347	0.0578	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	1	0.0925	FALSE	43	37	8	105	0	FALSE	ACH-000613
HOS_BONE	TTC3--EPHA5	4	1	TTC3	1139	chr21:38445664:+	EPHA5	68163	chr4:66509145:-	ONLY_REF_SPLICE	YES	5	4	0.5	0.56	0.0463	0.0116	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,EPHA5->ArcherDX_panel,EPH_receptor_A5,FoundationOne_panel,chr4:66185281-66536213:-	HOS_BONE	0.5	0.56	0.0579	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1143	chrM:8669:+	MT-RNR2	5305	chrM:2294:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	1	1	0.0463	FALSE	63	17	1	58	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	4	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	1	1	0.0463	FALSE	231	204	14	283	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	3	4	MT-ND4	1503	chrM:11262:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	13106	0	0	1	0.0347	0.0463	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	1	0.081	FALSE	231	217	16	283	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	3	4	MT-ND4	1783	chrM:11542:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11381	65	0	0.1	0.0347	0.0463	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	0.1	0.081	FALSE	231	217	16	283	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HOS_BONE	1	1	0.0463	FALSE	344	821	44	306	0	FALSE	ACH-000613
HOS_BONE	MT-ND5--MT-ATP8	3	4	MT-ND5	2290	chrM:13626:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1676	0	0	1	0.0347	0.0463	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	1	0.081	FALSE	43	37	8	105	0	FALSE	ACH-000613
HOS_BONE	MT-ND5--MT-ATP8	3	4	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	1578	0	0	1	0.0347	0.0463	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	1	0.081	FALSE	43	37	8	105	0	FALSE	ACH-000613
HOS_BONE	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0.0463	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HOS_BONE	1	1	0.081	FALSE	462	80	0	856	0	FALSE	ACH-000613
HOS_BONE	ZNF654--HMGB2	4	0	ZNF654	1688	chr3:88188941:+	HMGB2	12568	chr4:174253271:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HOS_BONE	1	1	0.0463	TRUE	0	0	0	518	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO2	3	3	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	45	1	0.12	0.86	0.0347	0.0347	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HOS_BONE	0.12	0.86	0.0694	FALSE	59	21	0	114	0	FALSE	ACH-000613
HOS_BONE	MT-CO1--MT-RNR2	3	3	MT-CO1	1775	chrM:6678:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	18757	0	0	1	0.0347	0.0347	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	0	1	0.0694	FALSE	44	51	6	21	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	3	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	11372	828	0	0.01	0.0347	0.0347	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	0.01	0.0694	FALSE	231	217	16	283	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	8387	16288	0	0	0.0347	0.0231	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOS_BONE	0	0	0.0578	FALSE	183	104	9	328	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO2	3	2	MT-ATP6	1123	chrM:8649:+	MT-CO2	4811	chrM:7715:+	INCL_NON_REF_SPLICE	YES	28	1	0.15	0.83	0.0347	0.0231	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HOS_BONE	0.15	0.83	0.0578	FALSE	59	21	0	114	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO2	3	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	18	1	0.22	0.83	0.0347	0.0231	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HOS_BONE	0.22	0.83	0.0578	FALSE	59	21	0	114	0	FALSE	ACH-000613
HOS_BONE	MT-CO1--MT-RNR2	3	2	MT-CO1	1566	chrM:6469:+	MT-RNR2	6103	chrM:2231:+	INCL_NON_REF_SPLICE	YES	16357	8397	0	0	0.0347	0.0231	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	0	0	0.0578	FALSE	44	51	6	21	0	FALSE	ACH-000613
HOS_BONE	MT-ND5--MT-ATP8	3	2	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	1885	1085	0	0	0.0347	0.0231	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	0	0	0.0578	FALSE	43	37	8	105	0	FALSE	ACH-000613
HOS_BONE	MT-ND5--MT-ND1	3	2	MT-ND5	2764	chrM:14100:+	MT-ND1	6296	chrM:3790:+	INCL_NON_REF_SPLICE	YES	3	5872	0.62	0	0.0347	0.0231	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[8075],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HOS_BONE	0	0.62	0.0578	FALSE	7	3	0	4	0	FALSE	ACH-000613
HOS_BONE	NRIP1--AF127936.7	3	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0.0231	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HOS_BONE	1	1	0.0578	FALSE	292	1546	117	613	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1530	chrM:9056:+	MT-CO1	5890	chrM:7112:+	INCL_NON_REF_SPLICE	YES	3857	15681	0	0	0.0347	0.0116	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOS_BONE	0	0	0.0463	FALSE	183	104	9	328	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1555	chrM:9081:+	MT-CO1	5956	chrM:7178:+	INCL_NON_REF_SPLICE	YES	2603	11606	0	0	0.0347	0.0116	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOS_BONE	0	0	0.0463	FALSE	183	104	9	328	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	10347	11322	0	0	0.0347	0.0116	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOS_BONE	0	0	0.0463	FALSE	183	104	9	328	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5909	chrM:7131:+	INCL_NON_REF_SPLICE	YES	9836	14517	0	0	0.0347	0.0116	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOS_BONE	0	0	0.0463	FALSE	183	104	9	328	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8334	18801	0	0	0.0347	0.0116	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOS_BONE	0	0	0.0463	FALSE	183	104	9	328	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1133	chrM:8659:+	MT-CO1	5176	chrM:6398:+	INCL_NON_REF_SPLICE	YES	8405	16468	0	0	0.0347	0.0116	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOS_BONE	0	0	0.0463	FALSE	183	104	9	328	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1139	chrM:8665:+	MT-RNR2	4749	chrM:1738:+	INCL_NON_REF_SPLICE	YES	8979	0	0	1	0.0347	0.0116	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	0	1	0.0463	FALSE	63	17	1	58	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	8370	0	0	1	0.0347	0.0116	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	0	1	0.0463	FALSE	63	17	1	58	0	FALSE	ACH-000613
HOS_BONE	NPM1P24--SET	3	1	NPM1P24	1541	chr10:74677752:-	SET	9005	chr9:131452900:+	INCL_NON_REF_SPLICE	YES	48	910	0.08	0	0.0347	0.0116	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HOS_BONE	0	0.08	0.0463	FALSE	0	0	0	1	0	FALSE	ACH-000613
HOS_BONE	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	48	1392	0.08	0	0.0347	0.0116	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HOS_BONE	0	0.08	0.0463	FALSE	0	0	0	434	0	FALSE	ACH-000613
HOS_BONE	TMEM25--TECTA	3	1	TMEM25	4315	chr11:118405070:+	TECTA	23513	chr11:121008130:+	ONLY_REF_SPLICE	YES	8	0	0.33	1	0.0347	0.0116	{Klijn_CCL:Sarcomatoid=1},TMEM25->chr11:118401756-118417995:+,transmembrane_protein_25,TECTA->Oncogene{Bushman},chr11:120971882-121062202:+,tectorin_alpha	HOS_BONE	0.33	1	0.0463	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	XXbac-BPG252P9.9--PSMA7	3	1	XXbac-BPG252P9.9	1282	chr6:30691373:-	PSMA7	6740	chr20:60716000:-	INCL_NON_REF_SPLICE	YES	2755	1896	0	0	0.0347	0.0116	XXbac-BPG252P9.9->chr6:30690882-30691654:-,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	HOS_BONE	0	0	0.0463	FALSE	0	0	0	1	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1100	chrM:8626:+	MT-RNR2	5246	chrM:2235:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	1	1	0.0347	FALSE	63	17	1	58	0	FALSE	ACH-000613
HOS_BONE	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1123	chrM:8649:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOS_BONE	1	1	0.0347	FALSE	63	17	1	58	0	FALSE	ACH-000613
HOS_BONE	MT-ND4--MT-ATP8	3	0	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOS_BONE	1	1	0.0347	FALSE	230	197	14	283	0	FALSE	ACH-000613
HOS_BONE	VPS45--SC5D	2	4	VPS45	4689	chr1:150048390:+	SC5D	26549	chr11:121177766:+	ONLY_REF_SPLICE	YES	136	314	0.04	0.02	0.0231	0.0463	VPS45->chr1:150039369-150117505:+,vacuolar_protein_sorting_45_homolog,SC5D->chr11:121163162-121179403:+,sterol-C5-desaturase	HOS_BONE	0.02	0.04	0.0694	TRUE	0	0	0	1	0	FALSE	ACH-000613
HOS_BONE	VPS45--SC5D	2	4	VPS45	3609	chr1:150044293:+	SC5D	26549	chr11:121177766:+	ONLY_REF_SPLICE	YES	140	314	0.04	0.02	0.0231	0.0463	VPS45->chr1:150039369-150117505:+,vacuolar_protein_sorting_45_homolog,SC5D->chr11:121163162-121179403:+,sterol-C5-desaturase	HOS_BONE	0.02	0.04	0.0694	TRUE	0	0	0	1	0	FALSE	ACH-000613
HOS_BONE	TTC7A--FSHR	2	3	TTC7A	11117	chr2:47206046:+	FSHR	37160	chr2:49247299:-	ONLY_REF_SPLICE	YES	18	0	0.22	1	0.0231	0.0347	{Klijn_CCL:Sarcomatoid=1},TTC7A->chr2:47143296-47303276:+,tetratricopeptide_repeat_domain_7A,FSHR->chr2:49189296-49381676:-,follicle_stimulating_hormone_receptor	HOS_BONE	0.22	1	0.0578	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	EXOC2--MET	1	6	EXOC2	2173	chr6:689139:-	MET	44972	chr7:116395409:+	ONLY_REF_SPLICE	YES	42	50	0.14	0.12	0.0116	0.0694	EXOC2->chr6:485133-693117:-,exocyst_complex_component_2,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HOS_BONE	0.12	0.14	0.081	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	RP11-58A17.4--ANKS1B	2	1	RP11-58A17.4	1659	chr12:58482333:+	ANKS1B	36047	chr12:99350182:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0.0116	RP11-58A17.4->chr12:58481675-58487145:+,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	HOS_BONE	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	EXD3--EHMT1	2	0	EXD3	1149	chr9:140317566:-	EHMT1	37413	chr9:140611078:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1},EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1	HOS_BONE	1	1	0.0231	TRUE	0	0	0	3	0	TRUE	ACH-000613
HOS_BONE	PAFAH1B2--GNAS	2	0	PAFAH1B2	1152	chr11:117015134:+	GNAS	33514	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HOS_BONE	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	PLGRKT--AIMP1	2	0	PLGRKT	3397	chr9:5431897:-	AIMP1	14134	chr4:107246142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PLGRKT->chr9:5357973-5437878:-,plasminogen_receptor_with_a_C-terminal_lysine,AIMP1->aminoacyl_tRNA_synthetase_complex-interacting_multifunctional_protein_1,chr4:107236701-107270383:+	HOS_BONE	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	PPP3CB--PLA2G12B	2	0	PPP3CB	8909	chr10:75227311:-	PLA2G12B	24741	chr10:74701092:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PPP3CB->chr10:75196186-75255782:-,protein_phosphatase_3_catalytic_subunit_beta,PLA2G12B->chr10:74694928-74714536:-,phospholipase_A2_group_XIIB	HOS_BONE	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	RCC1--CBX3	2	0	RCC1	2175	chr1:28834672:+	CBX3	20687	chr7:26242591:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CBX3->chr7:26240782-26252976:+,chromobox_3	HOS_BONE	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	RNF114--ZFAS1	2	0	RNF114	1142	chr20:48553089:+	ZFAS1	15453	chr20:47905582:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	RNF114->chr20:48552948-48570429:+,ring_finger_protein_114,ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+	HOS_BONE	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	TFRC--NCBP2	2	0	TFRC	16761	chr3:195785155:-	NCBP2	29797	chr3:196666303:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor,NCBP2->chr3:196662273-196669468:-,nuclear_cap_binding_protein_subunit_2	HOS_BONE	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	WTAPP1--RUVBL1	2	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	HOS_BONE	1	1	0.0231	TRUE	9	252	6	66	0	FALSE	ACH-000613
HOS_BONE	ZFAS1--LAMTOR5-AS1	2	0	ZFAS1	2031	chr20:47895745:+	LAMTOR5-AS1	12556	chr1:110954795:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	HGNC_GENEFAM,ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,LAMTOR5-AS1->LAMTOR5_antisense_RNA_1,chr1:110925441-110974982:+	HOS_BONE	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	HIPK2--STARD4-AS1	1	3	HIPK2	9273	chr7:139305147:-	STARD4-AS1	34783	chr5:111005116:+	ONLY_REF_SPLICE	YES	21	1	0.16	0.8	0.0116	0.0347	HIPK2->Oncogene{Bushman},chr7:139246316-139477577:-,homeodomain_interacting_protein_kinase_2,STARD4-AS1->STARD4_antisense_RNA_1,chr5:110847924-111075423:+	HOS_BONE	0.16	0.8	0.0463	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	2554	146	0	0.02	0.0116	0.0231	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	HOS_BONE	0	0.02	0.0347	FALSE	6	50	7	115	0	FALSE	ACH-000613
HOS_BONE	ATR--U2SURP	1	1	ATR	3414	chr3:142284963:-	U2SURP	75627	chr3:142751626:+	ONLY_REF_SPLICE	YES	23	146	0.08	0.01	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Vagina=1},ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	HOS_BONE	0.01	0.08	0.0232	FALSE	0	10	0	10	7	FALSE	ACH-000613
HOS_BONE	DLST--YLPM1	1	1	DLST	9411	chr14:75361112:+	YLPM1	20363	chr14:75245150:+	ONLY_REF_SPLICE	YES	237	79	0.01	0.02	0.0116	0.0116	LOCAL_REARRANGEMENT:+:[26350],DLST->Oncogene{Bushman},chr14:75348594-75370448:+,dihydrolipoamide_S-succinyltransferase,YLPM1->YLP_motif_containing_1,chr14:75230069-75322244:+	HOS_BONE	0.01	0.02	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000613
HOS_BONE	EDEM3--FAM129A	1	1	EDEM3	1425	chr1:184723623:-	FAM129A	38504	chr1:184801096:-	ONLY_REF_SPLICE	YES	19	49	0.1	0.04	0.0116	0.0116	LOCAL_REARRANGEMENT:-:[35811],EDEM3->ER_degradation_enhancing_alpha-mannosidase_like_protein_3,chr1:184659365-184724047:-,FAM129A->chr1:184759858-184943682:-,family_with_sequence_similarity_129_member_A	HOS_BONE	0.04	0.1	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000613
HOS_BONE	EXOC2--MET	1	1	EXOC2	1099	chr6:693019:-	MET	46133	chr7:116397491:+	ONLY_REF_SPLICE	NO	18	62	0.1	0.03	0.0116	0.0116	EXOC2->chr6:485133-693117:-,exocyst_complex_component_2,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HOS_BONE	0.03	0.1	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000613
HOS_BONE	KCNQ5-IT1--KCNQ5	1	1	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	7	1	0.22	0.0116	0.0116	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	HOS_BONE	0.22	1	0.0232	FALSE	1	11	0	34	0	FALSE	ACH-000613
HOS_BONE	PPP4R1--VAPA	1	1	PPP4R1	2015	chr18:9614224:-	VAPA	33688	chr18:9931807:+	ONLY_REF_SPLICE	YES	96	516	0.02	0	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	HOS_BONE	0	0.02	0.0232	FALSE	0	1	0	3	0	FALSE	ACH-000613
HOS_BONE	PRSS23--PICALM	1	1	PRSS23	8412	chr11:86534635:+	PICALM	25674	chr11:85742653:-	ONLY_REF_SPLICE	YES	2	210	0.5	0.01	0.0116	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},PRSS23->chr11:86502101-86663952:+,protease,_serine_23,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	HOS_BONE	0.01	0.5	0.0232	FALSE	0	3	0	5	0	FALSE	ACH-000613
HOS_BONE	RP11-58A17.4--ANKS1B	1	1	RP11-58A17.4	1659	chr12:58482333:+	ANKS1B	39867	chr12:99225914:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0.0116	RP11-58A17.4->chr12:58481675-58487145:+,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	HOS_BONE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000613
HOS_BONE	RPLP0--RNF10	1	1	RPLP0	3682	chr12:120636357:-	RNF10	16991	chr12:120995085:+	ONLY_REF_SPLICE	YES	4743	216	0	0.01	0.0116	0.0116	RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0,RNF10->chr12:120971283-121015397:+,ring_finger_protein_10	HOS_BONE	0	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000613
HOS_BONE	TAF4--PSMA7	1	1	TAF4	17661	chr20:60572606:-	PSMA7	30022	chr20:60716000:-	ONLY_REF_SPLICE	YES	92	1896	0.02	0	0.0116	0.0116	GTEx_FI:{Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Liver=1,Muscle_-_Skeletal=1},{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[70925],TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	HOS_BONE	0	0.02	0.0232	FALSE	1	3	0	4	0	FALSE	ACH-000613
HUTU80_SMALL_INTESTINE	RP11-206L10.9--LINC00152	115	57	RP11-206L10.9	1323	chr1:714472:+	LINC00152	28292	chr2:87820726:+	ONLY_REF_SPLICE	YES	2	158	0.99	0.52	1.2979	0.6433	RP11-206L10.9->chr1:714150-745440:+,LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152	HUTU80_SMALL_INTESTINE	0.52	0.99	1.9412	TRUE	0	0	0	1	0	TRUE	ACH-000538
HUTU80_SMALL_INTESTINE	TIMM23B--LINC00843	112	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.2641	0.2483	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HUTU80_SMALL_INTESTINE	0.99	1	1.5124	TRUE	508	994	45	981	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	TIMM23--RP11-464F9.1	70	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	258	3	0.22	0.96	0.7901	0.0226	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HUTU80_SMALL_INTESTINE	0.22	0.96	0.8127	TRUE	519	3926	326	965	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-TA--MT-TC	52	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5869	0.1129	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUTU80_SMALL_INTESTINE	1	1	0.6998	FALSE	462	80	0	856	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND4--MT-ND4L	4	149	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	25	0	0.86	1	0.0451	1.6817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUTU80_SMALL_INTESTINE	0.86	1	1.7268	FALSE	344	826	44	306	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-TA--MT-TC	34	5	MT-TA	1053	chrM:5603:-	MT-TC	4081	chrM:5815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3837	0.0564	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUTU80_SMALL_INTESTINE	1	1	0.4401	FALSE	462	80	0	856	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND4--MT-ND4L	7	111	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	0	0.96	1	0.079	1.2528	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUTU80_SMALL_INTESTINE	0.96	1	1.3318	FALSE	344	821	44	306	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND4--MT-ND4L	5	108	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	17	0	0.87	1	0.0564	1.2189	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUTU80_SMALL_INTESTINE	0.87	1	1.2753	FALSE	344	826	44	306	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND6--MT-TE	29	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3273	0.0113	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUTU80_SMALL_INTESTINE	1	1	0.3386	FALSE	499	1288	110	792	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	RP11-603B24.1--HERC2P3	18	16	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2032	0.1806	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	HUTU80_SMALL_INTESTINE	1	1	0.3838	TRUE	27	10	1	20	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	ZNF654--HMGB2	19	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2144	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HUTU80_SMALL_INTESTINE	1	1	0.2144	TRUE	0	0	0	518	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND4--MT-ND4L	11	31	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	12160	0	0	1	0.1242	0.3499	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUTU80_SMALL_INTESTINE	0	1	0.4741	FALSE	328	800	43	304	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ATP6--MT-CO2	16	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	29	1	0.42	0.95	0.1806	0.0564	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUTU80_SMALL_INTESTINE	0.42	0.95	0.237	FALSE	59	21	0	114	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND6--MT-TE	17	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1919	0.0113	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUTU80_SMALL_INTESTINE	1	1	0.2032	FALSE	499	1288	110	792	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	LINC01036--LINC01037	16	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1806	0.0113	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HUTU80_SMALL_INTESTINE	0.94	1	0.1919	FALSE	0	24	0	62	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-CO3--MT-ATP6	7	31	MT-CO3	1123	chrM:9329:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.079	0.3499	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUTU80_SMALL_INTESTINE	0.97	1	0.4289	FALSE	189	492	56	216	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	NPM1P24--SET	13	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1467	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HUTU80_SMALL_INTESTINE	1	1	0.1467	TRUE	0	0	0	434	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	RP11-680G10.1--GSE1	12	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	88	1	0.15	0.1354	0.0339	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HUTU80_SMALL_INTESTINE	0.15	1	0.1693	TRUE	458	1351	185	561	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND6--MT-TE	9	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1016	0.1467	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUTU80_SMALL_INTESTINE	0.96	1	0.2483	FALSE	499	1288	110	792	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	RP11-123O10.4--GRIP1	11	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1242	0.0451	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HUTU80_SMALL_INTESTINE	1	1	0.1693	FALSE	416	2512	207	587	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-CO3--MT-ATP6	4	31	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	3	0.92	0.92	0.0451	0.3499	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUTU80_SMALL_INTESTINE	0.92	0.92	0.395	FALSE	189	492	56	216	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-CO3--MT-ATP6	4	31	MT-CO3	1126	chrM:9332:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	NO	2	3	0.95	0.92	0.0451	0.3499	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUTU80_SMALL_INTESTINE	0.92	0.95	0.395	FALSE	189	492	56	216	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND4--MT-ND4L	7	19	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	728	0	0.03	1	0.079	0.2144	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUTU80_SMALL_INTESTINE	0.03	1	0.2934	FALSE	344	827	44	306	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-CO3--MT-ATP6	3	31	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	3	42	0.92	0.45	0.0339	0.3499	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUTU80_SMALL_INTESTINE	0.45	0.92	0.3838	FALSE	189	492	56	216	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND4--MT-ND4L	6	19	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1281	0	0.02	1	0.0677	0.2144	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUTU80_SMALL_INTESTINE	0.02	1	0.2821	FALSE	344	827	44	306	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND4--MT-ND4L	6	19	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.0677	0.2144	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUTU80_SMALL_INTESTINE	0.86	1	0.2821	FALSE	344	821	44	306	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND4--MT-ND4L	3	31	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1129	0	0.03	1	0.0339	0.3499	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUTU80_SMALL_INTESTINE	0.03	1	0.3838	FALSE	344	827	44	306	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND4--MT-ND4L	7	9	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	99	0	0.14	1	0.079	0.1016	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUTU80_SMALL_INTESTINE	0.14	1	0.1806	FALSE	344	827	44	306	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-TC--MT-TY	9	1	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1016	0.0113	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HUTU80_SMALL_INTESTINE	1	1	0.1129	FALSE	51	280	19	36	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND4--MT-ND4L	4	19	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	28	0	0.45	1	0.0451	0.2144	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUTU80_SMALL_INTESTINE	0.45	1	0.2595	FALSE	344	826	44	306	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND4--MT-ND4L	4	19	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	40	0	0.37	1	0.0451	0.2144	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUTU80_SMALL_INTESTINE	0.37	1	0.2595	FALSE	344	826	44	306	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND4--MT-ND4L	3	18	MT-ND4	1278	chrM:11037:+	MT-ND4L	5663	chrM:10754:+	INCL_NON_REF_SPLICE	YES	82	0	0.2	1	0.0339	0.2032	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUTU80_SMALL_INTESTINE	0.2	1	0.2371	FALSE	344	827	44	306	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND6--MT-TE	4	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0.1467	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUTU80_SMALL_INTESTINE	1	1	0.1918	FALSE	499	1288	110	792	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.079	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HUTU80_SMALL_INTESTINE	1	1	0.079	TRUE	1	39	0	134	39	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ATP6--MT-CO1	6	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	7693	24316	0	0	0.0677	0.0226	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUTU80_SMALL_INTESTINE	0	0	0.0903	FALSE	183	104	9	328	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ATP6--MT-CO2	5	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	29	1	0.26	0.91	0.0564	0.0564	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUTU80_SMALL_INTESTINE	0.26	0.91	0.1128	FALSE	59	21	0	114	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND6--MT-TE	3	13	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0.1467	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUTU80_SMALL_INTESTINE	1	1	0.1806	FALSE	499	1288	110	792	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0677	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUTU80_SMALL_INTESTINE	1	1	0.0677	FALSE	462	80	0	856	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-CO3--MT-ATP6	4	7	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0.079	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUTU80_SMALL_INTESTINE	1	1	0.1241	FALSE	189	492	56	216	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	TMEFF2--SDPR	5	3	TMEFF2	9646	chr2:192922405:-	SDPR	22184	chr2:192701443:-	ONLY_REF_SPLICE	YES	718	728	0.01	0.01	0.0564	0.0339	TMEFF2->chr2:192813769-193060435:-,transmembrane_protein_with_EGF_like_and_two_follistatin_like_domains_2,SDPR->chr2:192699028-192711981:-,serum_deprivation_response	HUTU80_SMALL_INTESTINE	0.01	0.01	0.0903	FALSE	0	0	0	1	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ATP6--MT-CO2	5	2	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	NO	8	1	0.47	0.88	0.0564	0.0226	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUTU80_SMALL_INTESTINE	0.47	0.88	0.079	FALSE	59	21	0	114	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ATP6--MT-CO1	5	1	MT-ATP6	1082	chrM:8608:+	MT-CO1	5379	chrM:6601:+	INCL_NON_REF_SPLICE	YES	5126	24636	0	0	0.0564	0.0113	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUTU80_SMALL_INTESTINE	0	0	0.0677	FALSE	183	104	9	328	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ATP6--MT-CO2	5	1	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	19	2	0.24	0.75	0.0564	0.0113	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUTU80_SMALL_INTESTINE	0.24	0.75	0.0677	FALSE	59	21	0	114	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ATP6--MT-CO2	5	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	8	1	0.43	0.86	0.0564	0.0113	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUTU80_SMALL_INTESTINE	0.43	0.86	0.0677	FALSE	59	21	0	114	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-CO3--MT-ATP6	5	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0564	0.0113	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUTU80_SMALL_INTESTINE	0.6	1	0.0677	FALSE	189	492	56	216	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0564	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUTU80_SMALL_INTESTINE	1	1	0.0564	FALSE	499	1288	110	792	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	TOMM40--PVRL2	4	4	TOMM40	4498	chr19:45397323:+	PVRL2	14289	chr19:45375110:+	ONLY_REF_SPLICE	YES	397	319	0.02	0.02	0.0451	0.0451	LOCAL_REARRANGEMENT:+:[1341],TOMM40->chr19:45393826-45406946:+,translocase_of_outer_mitochondrial_membrane_40,PVRL2->chr19:45349432-45392485:+	HUTU80_SMALL_INTESTINE	0.02	0.02	0.0902	TRUE	0	0	0	1	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	ZNF519--GNAS	4	4	ZNF519	2343	chr18:14124349:-	GNAS	38332	chr20:57470667:+	ONLY_REF_SPLICE	YES	162	862	0.05	0.01	0.0451	0.0451	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HUTU80_SMALL_INTESTINE	0.01	0.05	0.0902	FALSE	0	0	0	1	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ATP6--MT-CO1	4	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7943	24803	0	0	0.0451	0.0339	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUTU80_SMALL_INTESTINE	0	0	0.079	FALSE	183	104	9	328	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ATP6--MT-CO1	3	4	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	9780	22211	0	0	0.0339	0.0451	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUTU80_SMALL_INTESTINE	0	0	0.079	FALSE	183	104	9	328	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUTU80_SMALL_INTESTINE	1	1	0.0451	FALSE	499	1288	110	792	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	TMEFF2--SDPR	3	3	TMEFF2	5624	chr2:193044394:-	SDPR	22184	chr2:192701443:-	ONLY_REF_SPLICE	YES	652	728	0.01	0.01	0.0339	0.0339	TMEFF2->chr2:192813769-193060435:-,transmembrane_protein_with_EGF_like_and_two_follistatin_like_domains_2,SDPR->chr2:192699028-192711981:-,serum_deprivation_response	HUTU80_SMALL_INTESTINE	0.01	0.01	0.0678	FALSE	0	0	0	1	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	DENND1A--LHX2	3	2	DENND1A	6804	chr9:126519982:-	LHX2	48650	chr9:126783378:+	ONLY_REF_SPLICE	YES	225	296	0.02	0.02	0.0339	0.0226	LOCAL_INVERSION:-:+:[71518],DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,LHX2->LIM_homeobox_2,chr9:126763949-126795580:+	HUTU80_SMALL_INTESTINE	0.02	0.02	0.0565	TRUE	0	0	0	1	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ATP6--MT-CO2	3	2	MT-ATP6	1571	chrM:9097:+	MT-CO2	5028	chrM:7932:+	INCL_NON_REF_SPLICE	YES	2	1	0.71	0.83	0.0339	0.0226	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUTU80_SMALL_INTESTINE	0.71	0.83	0.0565	FALSE	59	21	0	114	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ATP6--MT-CO2	3	2	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	30	1	0.14	0.83	0.0339	0.0226	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUTU80_SMALL_INTESTINE	0.14	0.83	0.0565	FALSE	59	21	0	114	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	176	1	0.03	0.0339	0.0226	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HUTU80_SMALL_INTESTINE	0.03	1	0.0565	TRUE	465	1949	224	605	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1078	chrM:8604:+	MT-CO1	5198	chrM:6420:+	INCL_NON_REF_SPLICE	YES	5152	21201	0	0	0.0339	0.0113	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUTU80_SMALL_INTESTINE	0	0	0.0452	FALSE	183	104	9	328	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	HSPBP1--GRK5	3	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HUTU80_SMALL_INTESTINE	1	1	0.0339	TRUE	1	39	0	134	39	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	HSPBP1--GRK5	3	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HUTU80_SMALL_INTESTINE	1	1	0.0339	TRUE	1	39	0	134	39	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	LENG8--MT-ND4L	3	0	LENG8	12041	chr19:54971649:+	MT-ND4L	16611	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LENG8->chr19:54960065-54973217:+,leukocyte_receptor_cluster_(LRC)_member_8,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUTU80_SMALL_INTESTINE	1	1	0.0339	FALSE	0	0	0	1	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUTU80_SMALL_INTESTINE	1	1	0.0339	FALSE	499	1288	110	792	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MT-TC--MT-TY	3	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HUTU80_SMALL_INTESTINE	1	1	0.0339	FALSE	51	280	19	36	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	SAMD5--SASH1	3	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HUTU80_SMALL_INTESTINE	1	1	0.0339	TRUE	53	396	64	110	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	GPR126--VTA1	2	1	GPR126	2987	chr6:142630781:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	YES	317	216	0.01	0.01	0.0226	0.0113	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	HUTU80_SMALL_INTESTINE	0.01	0.01	0.0339	FALSE	0	2	0	15	1	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	ANXA1--ALDH1A1	2	0	ANXA1	1168	chr9:75766840:+	ALDH1A1	21839	chr9:75555168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_INVERSION:+:-:[71315],ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+,ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-	HUTU80_SMALL_INTESTINE	1	1	0.0226	TRUE	0	0	0	4	0	TRUE	ACH-000538
HUTU80_SMALL_INTESTINE	PARD3--CUL2	2	0	PARD3	1450	chr10:35103804:-	CUL2	56110	chr10:35305322:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,CUL2->chr10:35297479-35379570:-,cullin_2	HUTU80_SMALL_INTESTINE	1	1	0.0226	TRUE	0	1	0	2	1	TRUE	ACH-000538
HUTU80_SMALL_INTESTINE	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HUTU80_SMALL_INTESTINE	1	1	0.0226	FALSE	16	356	14	466	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	RP11-184D12.1--IGSF9B	2	0	RP11-184D12.1	3199	chr15:36325394:-	IGSF9B	34966	chr11:133781902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RP11-184D12.1->chr15:36231368-36544458:-,IGSF9B->chr11:133778459-133826880:-,immunoglobulin_superfamily_member_9B	HUTU80_SMALL_INTESTINE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000538
HUTU80_SMALL_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUTU80_SMALL_INTESTINE	1	1	0.0226	FALSE	515	4851	409	746	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	RP5-977B1.7--TGIF2	2	0	RP5-977B1.7	2583	chr20:35199844:-	TGIF2	17191	chr20:35207144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_INVERSION:-:+:[97],RP5-977B1.7->chr20:35136563-35201794:-,TGIF2->TGFB_induced_factor_homeobox_2,chr20:35201891-35222353:+	HUTU80_SMALL_INTESTINE	1	1	0.0226	TRUE	0	3	0	3	3	TRUE	ACH-000538
HUTU80_SMALL_INTESTINE	TIMM23--RP11-464F9.1	2	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	29063	chr10:75442552:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HUTU80_SMALL_INTESTINE	1	1	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HUTU80_SMALL_INTESTINE	1	1	0.0226	TRUE	62	24	1	171	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	TTI1--SEPT11	2	0	TTI1	1065	chr20:36661806:-	SEPT11	24590	chr4:77926754:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-,SEPT11->chr4:77870856-77961537:+,septin_11	HUTU80_SMALL_INTESTINE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000538
HUTU80_SMALL_INTESTINE	RAB28--BOD1L1	1	3	RAB28	3476	chr4:13475942:-	BOD1L1	21302	chr4:13621691:-	ONLY_REF_SPLICE	NO	57	1	0.07	0.8	0.0113	0.0339	LOCAL_REARRANGEMENT:-:[84373],RAB28->RAB28,_member_RAS_oncogene_family,chr4:13362978-13485989:-,BOD1L1->biorientation_of_chromosomes_in_cell_division_1_like_1,chr4:13570362-13629347:-	HUTU80_SMALL_INTESTINE	0.07	0.8	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000538
HUTU80_SMALL_INTESTINE	TMEFF2--SDPR	1	3	TMEFF2	4597	chr2:193049080:-	SDPR	22184	chr2:192701443:-	ONLY_REF_SPLICE	YES	575	728	0.01	0.01	0.0113	0.0339	TMEFF2->chr2:192813769-193060435:-,transmembrane_protein_with_EGF_like_and_two_follistatin_like_domains_2,SDPR->chr2:192699028-192711981:-,serum_deprivation_response	HUTU80_SMALL_INTESTINE	0.01	0.01	0.0452	FALSE	0	0	0	1	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	AC098617.1--MYO1B	1	2	AC098617.1	2732	chr2:192787770:+	MYO1B	24744	chr2:192206187:+	ONLY_REF_SPLICE	YES	207	5	0.01	0.38	0.0113	0.0226	AC098617.1->chr2:192711265-192908909:+,MYO1B->chr2:192109911-192290115:+,myosin_IB	HUTU80_SMALL_INTESTINE	0.01	0.38	0.0339	FALSE	0	0	0	1	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	AC098617.1--MYO1B	1	2	AC098617.1	2732	chr2:192787770:+	MYO1B	21389	chr2:192141613:+	ONLY_REF_SPLICE	YES	207	2	0.01	0.6	0.0113	0.0226	AC098617.1->chr2:192711265-192908909:+,MYO1B->chr2:192109911-192290115:+,myosin_IB	HUTU80_SMALL_INTESTINE	0.01	0.6	0.0339	FALSE	0	0	0	1	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	AC098617.1--MYO1B	1	2	AC098617.1	2732	chr2:192787770:+	MYO1B	23649	chr2:192194661:+	ONLY_REF_SPLICE	NO	207	2	0.01	0.6	0.0113	0.0226	AC098617.1->chr2:192711265-192908909:+,MYO1B->chr2:192109911-192290115:+,myosin_IB	HUTU80_SMALL_INTESTINE	0.01	0.6	0.0339	FALSE	0	0	0	1	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	AC098617.1--TMEFF2	1	2	AC098617.1	2732	chr2:192787770:+	TMEFF2	27162	chr2:192863934:-	ONLY_REF_SPLICE	YES	207	689	0.01	0	0.0113	0.0226	NEIGHBORS_OVERLAP:+:-:[95140],AC098617.1->chr2:192711265-192908909:+,TMEFF2->chr2:192813769-193060435:-,transmembrane_protein_with_EGF_like_and_two_follistatin_like_domains_2	HUTU80_SMALL_INTESTINE	0	0.01	0.0339	FALSE	0	0	0	1	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	ANXA1--ALDH1A1	1	1	ANXA1	9398	chr9:75780125:+	ALDH1A1	25215	chr9:75542093:-	ONLY_REF_SPLICE	YES	6190	10122	0	0	0.0113	0.0113	LOCAL_INVERSION:+:-:[71315],ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+,ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-	HUTU80_SMALL_INTESTINE	0	0	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	ENC1--TBL1X	1	1	ENC1	2118	chr5:73936132:-	TBL1X	16459	chrX:9469820:+	ONLY_REF_SPLICE	YES	1822	2	0	0.5	0.0113	0.0113	ENC1->Oncogene{Bushman},chr5:73923234-73937249:-,ectodermal-neural_cortex_1,TBL1X->chrX:9431335-9687780:+,transducin_(beta)-like_1X-linked	HUTU80_SMALL_INTESTINE	0	0.5	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	GPR126--VTA1	1	1	GPR126	26489	chr6:142741241:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	YES	218	216	0.01	0.01	0.0113	0.0113	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	HUTU80_SMALL_INTESTINE	0.01	0.01	0.0226	FALSE	0	1	0	1	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	MEIS2--C15orf41	1	1	MEIS2	13726	chr15:37242525:-	C15orf41	31752	chr15:36936479:+	ONLY_REF_SPLICE	NO	161	88	0.01	0.02	0.0113	0.0113	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:-:+:[78957],MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,C15orf41->chr15:36871812-37102449:+,chromosome_15_open_reading_frame_41	HUTU80_SMALL_INTESTINE	0.01	0.02	0.0226	FALSE	0	0	0	2	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	WDR83--EIF4G1	1	1	WDR83	4507	chr19:12781635:+	EIF4G1	20863	chr3:184042666:+	ONLY_REF_SPLICE	YES	114	462	0.02	0	0.0113	0.0113	WDR83->WD_repeat_domain_83,chr19:12777614-12786646:+,EIF4G1->Oncogene{Bushman},chr3:184032283-184053146:+,eukaryotic_translation_initiation_factor_4_gamma_1	HUTU80_SMALL_INTESTINE	0	0.02	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000538
HUTU80_SMALL_INTESTINE	XKR9--LACTB2	1	1	XKR9	1174	chr8:71581773:+	LACTB2	20001	chr8:71556478:-	ONLY_REF_SPLICE	YES	0	86	1	0.02	0.0113	0.0113	LOCAL_INVERSION:+:-:[191],XKR9->XK_related_9,chr8:71581600-71702606:+,LACTB2->chr8:71547553-71581409:-,lactamase_beta_2	HUTU80_SMALL_INTESTINE	0.02	1	0.0226	TRUE	0	11	0	8	7	TRUE	ACH-000538
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	291	75	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	1	1	1	4.1126	1.06	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	5.1726	TRUE	361	258	24	38	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	220	115	UPF3A	4015	chr13:115052104:+	CDC16	26255	chr13:115027362:+	ONLY_REF_SPLICE	YES	93	224	0.78	0.6	3.1092	1.6253	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.78	4.7345	TRUE	0	2	0	3	2	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	101	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.4274	0.3392	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.7666	TRUE	508	994	45	981	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	84	54	BCR	21553	chr22:23632600:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	1	0	0.99	1	1.1872	0.7632	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.9504	TRUE	0	2	1	16	2	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	73	94	UPF3A	4015	chr13:115052104:+	CDC16	27247	chr13:115028354:+	ONLY_REF_SPLICE	YES	93	225	0.64	0.43	1.0317	1.3285	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.64	2.3602	TRUE	0	2	0	3	2	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	83	43	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	1.173	0.6077	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.7807	TRUE	0	2	0	9	2	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	74	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0458	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0458	TRUE	0	0	0	518	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	55	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	168	3	0.25	0.95	0.7773	0.0283	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.95	0.8056	TRUE	519	3926	326	965	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--ZSWIM6	32	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4522	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4522	TRUE	47	32	1	28	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	17	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2403	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2403	TRUE	0	0	0	434	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	2	53	BCR	21553	chr22:23632600:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.0283	0.749	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.7773	TRUE	0	2	1	16	2	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	12	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	16	1	0.52	0.1696	0.0707	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	1	0.2403	TRUE	458	1351	185	561	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	8	19	ABL1	1510	chr9:133589842:+	BCR	43197	chr22:23637211:+	ONLY_REF_SPLICE	YES	0	5	1	0.84	0.1131	0.2685	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	1	0.3816	TRUE	0	0	0	6	0	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	7	11	ABL1	1510	chr9:133589842:+	BCR	48463	chr22:23651611:+	ONLY_REF_SPLICE	YES	0	30	1	0.38	0.0989	0.1555	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.2544	TRUE	0	1	0	5	1	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	6	12	UPF3A	4015	chr13:115052104:+	CDC16	30506	chr13:115037753:+	INCL_NON_REF_SPLICE	YES	93	235	0.16	0.07	0.0848	0.1696	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.16	0.2544	TRUE	0	0	0	1	0	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	8	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1131	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1131	TRUE	465	1949	224	605	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0848	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0848	FALSE	499	1288	110	792	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	3	12	UPF3A	4015	chr13:115052104:+	CDC16	30503	chr13:115037750:+	INCL_NON_REF_SPLICE	YES	93	245	0.14	0.06	0.0424	0.1696	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.14	0.212	TRUE	0	0	0	1	0	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-634B7.4--TRIM58	4	7	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	42	1	0.21	0.0565	0.0989	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.1554	TRUE	158	633	76	73	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	4	1	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	30	1	0.14	0.0565	0.0141	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.0706	FALSE	1	11	0	34	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0.0141	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0706	FALSE	499	1288	110	792	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0.0283	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0707	FALSE	499	1288	110	792	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0424	TRUE	0	0	0	434	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0.0141	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0424	TRUE	62	24	1	171	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C14orf105--STYX	2	0	C14orf105	8353	chr14:57942300:-	STYX	18416	chr14:53213144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},C14orf105->chr14:57936019-57960585:-,chromosome_14_open_reading_frame_105,STYX->chr14:53196898-53241716:+,serine/threonine/tyrosine_interacting_protein	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	2	0	2	2	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCUN1D1--MKI67	2	0	DCUN1D1	4385	chr3:182683467:-	MKI67	22422	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	DCUN1D1->chr3:182655862-182703741:-,defective_in_cullin_neddylation_1_domain_containing_1,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	2	0	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCARB1--UBC	2	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	55	66	6	101	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRRT--POLR3H	2	0	SRRT	1601	chr7:100473333:+	POLR3H	15650	chr22:41936799:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	SRRT->chr7:100472733-100486285:+,serrate,_RNA_effector_molecule,POLR3H->chr22:41921808-41940610:-,polymerase_(RNA)_III_subunit_H	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EMG1--RPS27A	1	1	EMG1	2414	chr12:7080253:+	RPS27A	13660	chr2:55459944:+	ONLY_REF_SPLICE	NO	185	20	0.01	0.09	0.0141	0.0141	EMG1->EMG1_N1-specific_pseudouridine_methyltransferase,chr12:7072408-7105520:+,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.09	0.0282	FALSE	0	0	0	1	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0141	0.0141	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0282	FALSE	16	356	14	466	0	FALSE	ACH-000074
KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0141	0.0141	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KU812_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0282	FALSE	0	23	1	67	0	FALSE	ACH-000074
HEC50B_ENDOMETRIUM	PPP2R4--IFIH1	159	59	PPP2R4	4593	chr9:131882889:+	IFIH1	24893	chr2:163167443:-	ONLY_REF_SPLICE	YES	277	2	0.44	0.99	1.6319	0.6055	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	HEC50B_ENDOMETRIUM	0.44	0.99	2.2374	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	TIMM23B--LINC00843	142	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.4574	0.3489	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HEC50B_ENDOMETRIUM	0.99	1	1.8063	TRUE	508	994	45	981	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	TIMM23--RP11-464F9.1	83	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	374	7	0.19	0.92	0.8518	0.0205	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HEC50B_ENDOMETRIUM	0.19	0.92	0.8723	TRUE	519	3926	326	965	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	ARID1B--RPS20	55	40	ARID1B	8327	chr6:157256710:+	RPS20	40672	chr8:56986718:-	ONLY_REF_SPLICE	YES	27	2338	0.78	0.04	0.5645	0.4105	ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+,RPS20->chr8:56979854-56987069:-,ribosomal_protein_S20	HEC50B_ENDOMETRIUM	0.04	0.78	0.975	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	IPO8--ASPSCR1	52	46	IPO8	3091	chr12:30843430:-	ASPSCR1	49561	chr17:79966913:+	ONLY_REF_SPLICE	YES	100	83	0.49	0.54	0.5337	0.4721	IPO8->chr12:30781922-30848920:-,importin_8,ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+	HEC50B_ENDOMETRIUM	0.49	0.54	1.0058	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-CO2	57	3	MT-ND5	2667	chrM:14003:+	MT-CO2	5947	chrM:7720:+	INCL_NON_REF_SPLICE	YES	1264	0	0.05	1	0.585	0.0308	LOCAL_REARRANGEMENT:+:[4068],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC50B_ENDOMETRIUM	0.05	1	0.6158	FALSE	7	5	0	9	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	4	195	MT-ND4	2281	chrM:12040:+	MT-ND4L	5383	chrM:10474:+	INCL_NON_REF_SPLICE	YES	72	0	0.73	1	0.0411	2.0013	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.73	1	2.0424	FALSE	284	710	36	297	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	4	194	MT-ND4	1735	chrM:11494:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	5853	0	0.03	1	0.0411	1.9911	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.03	1	2.0322	FALSE	344	827	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	3	194	MT-ND4	1773	chrM:11532:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	7499	0	0.03	1	0.0308	1.9911	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.03	1	2.0219	FALSE	344	827	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	IPO8--ASPSCR1	41	41	IPO8	1423	chr12:30848498:-	ASPSCR1	49561	chr17:79966913:+	ONLY_REF_SPLICE	YES	102	83	0.45	0.5	0.4208	0.4208	IPO8->chr12:30781922-30848920:-,importin_8,ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+	HEC50B_ENDOMETRIUM	0.45	0.5	0.8416	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	CAPN15--RAB11FIP3	50	4	CAPN15	2366	chr16:583998:+	RAB11FIP3	21750	chr16:521295:+	ONLY_REF_SPLICE	YES	32	73	0.63	0.43	0.5132	0.0411	LOCAL_REARRANGEMENT:+:[4706],CAPN15->calpain_15,chr16:577717-604636:+,RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+	HEC50B_ENDOMETRIUM	0.43	0.63	0.5543	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	4	188	MT-ND4	1144	chrM:10903:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	47	0	0.8	1	0.0411	1.9295	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.8	1	1.9706	FALSE	344	826	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	3	190	MT-ND4	1213	chrM:10972:+	MT-ND4L	5538	chrM:10629:+	INCL_NON_REF_SPLICE	YES	91	0	0.68	1	0.0308	1.95	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.68	1	1.9808	FALSE	344	826	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	3	188	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	52	0	0.79	1	0.0308	1.9295	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.79	1	1.9603	FALSE	344	826	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	3	187	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	30	0	0.86	1	0.0308	1.9192	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.86	1	1.95	FALSE	344	826	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	10	134	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	7992	0	0.02	1	0.1026	1.3753	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.02	1	1.4779	FALSE	344	827	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	8	142	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	21	0	0.88	1	0.0821	1.4574	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.88	1	1.5395	FALSE	344	821	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	SYNJ2--TMEM181	33	29	SYNJ2	9655	chr6:158480385:+	TMEM181	45868	chr6:159026299:+	ONLY_REF_SPLICE	YES	37	50	0.63	0.55	0.3387	0.2976	SYNJ2->chr6:158402888-158520208:+,synaptojanin_2,TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181	HEC50B_ENDOMETRIUM	0.55	0.63	0.6363	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO2	35	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	61	1	0.38	0.97	0.3592	0.0308	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC50B_ENDOMETRIUM	0.38	0.97	0.39	FALSE	59	21	0	114	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	35	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	13852	1	0	0.97	0.3592	0.0103	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	0.97	0.3695	FALSE	230	193	14	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	SYNJ2--TMEM181	25	26	SYNJ2	8558	chr6:158476060:+	TMEM181	45868	chr6:159026299:+	ONLY_REF_SPLICE	YES	46	50	0.53	0.5	0.2566	0.2668	SYNJ2->chr6:158402888-158520208:+,synaptojanin_2,TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181	HEC50B_ENDOMETRIUM	0.5	0.53	0.5234	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	C15orf57--CBX3	25	19	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	46	37	0.49	0.54	0.2566	0.195	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEC50B_ENDOMETRIUM	0.49	0.54	0.4516	TRUE	267	562	48	632	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-TA--MT-TC	28	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2874	0.0616	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC50B_ENDOMETRIUM	1	1	0.349	FALSE	462	80	0	856	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	26	12	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	8	0	0.83	1	0.2668	0.1232	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0.83	1	0.39	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	16	37	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	13300	0	0	1	0.1642	0.3797	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0	1	0.5439	FALSE	328	800	43	304	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	C15orf57--CBX3	18	23	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	52	37	0.44	0.53	0.1847	0.2361	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEC50B_ENDOMETRIUM	0.44	0.53	0.4208	TRUE	267	562	48	632	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	NRIP1--AF127936.7	20	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.65	1	0.2053	0.0411	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC50B_ENDOMETRIUM	0.65	1	0.2464	FALSE	292	1546	117	613	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	ANKHD1--RICTOR	18	9	ANKHD1	1460	chr5:139781858:+	RICTOR	50874	chr5:38982138:-	ONLY_REF_SPLICE	YES	51	6	0.35	0.82	0.1847	0.0924	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-	HEC50B_ENDOMETRIUM	0.35	0.82	0.2771	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND3--MT-ATP8	20	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2053	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	1	1	0.2053	FALSE	351	233	23	137	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	18	3	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5399	0	0	1	0.1847	0.0308	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.2155	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	17	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	14012	0	0	1	0.1745	0.0103	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.1848	FALSE	231	204	14	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	IPO8--ASPSCR1	8	35	IPO8	1423	chr12:30848498:-	ASPSCR1	49576	chr17:79966928:+	INCL_NON_REF_SPLICE	NO	102	80	0.3	0.35	0.0821	0.3592	IPO8->chr12:30781922-30848920:-,importin_8,ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+	HEC50B_ENDOMETRIUM	0.3	0.35	0.4413	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	PPP2R4--IFIH1	2	59	PPP2R4	4611	chr9:131882907:+	IFIH1	24893	chr2:163167443:-	ONLY_REF_SPLICE	YES	286	2	0.18	0.97	0.0205	0.6055	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	HEC50B_ENDOMETRIUM	0.18	0.97	0.626	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	15	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16182	0	0	1	0.1539	0.0103	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.1642	FALSE	231	205	14	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	3	49	MT-ND4	1125	chrM:10884:+	MT-ND4L	5651	chrM:10742:+	INCL_NON_REF_SPLICE	YES	35	0	0.6	1	0.0308	0.5029	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.6	1	0.5337	FALSE	344	826	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	3	47	MT-ND4	1093	chrM:10852:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	29	0	0.63	1	0.0308	0.4824	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.63	1	0.5132	FALSE	344	826	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	13	6	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17357	0	0	1	0.1334	0.0616	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.195	FALSE	231	217	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	5	37	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	73	0	0.37	1	0.0513	0.3797	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.37	1	0.431	FALSE	344	826	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	13	4	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3186	0	0.01	1	0.1334	0.0411	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0.01	1	0.1745	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	13	4	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	8	9	0.68	0.65	0.1334	0.0411	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0.65	0.68	0.1745	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND6--MT-TE	6	31	MT-ND6	1194	chrM:14480:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.0616	0.3182	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC50B_ENDOMETRIUM	0.9	1	0.3798	FALSE	499	1288	110	792	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	12	6	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17026	0	0	1	0.1232	0.0616	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.1848	FALSE	231	217	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND6--MT-TE	13	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1334	0.0205	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC50B_ENDOMETRIUM	1	1	0.1539	FALSE	499	1288	110	792	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	RP11-680G10.1--GSE1	13	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	39	1	0.28	0.1334	0.0205	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEC50B_ENDOMETRIUM	0.28	1	0.1539	TRUE	465	1949	224	605	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO2	13	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	42	0	0.25	1	0.1334	0.0103	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC50B_ENDOMETRIUM	0.25	1	0.1437	FALSE	59	21	0	114	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO2	13	1	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	56	1	0.2	0.93	0.1334	0.0103	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC50B_ENDOMETRIUM	0.2	0.93	0.1437	FALSE	59	21	0	114	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	RP11-680G10.1--GSE1	12	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	16	1	0.52	0.1232	0.0513	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEC50B_ENDOMETRIUM	0.52	1	0.1745	TRUE	458	1351	185	561	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	SYNRG--AC091199.1	11	8	SYNRG	6868	chr17:35944756:-	AC091199.1	39327	chr17:36162301:-	INCL_NON_REF_SPLICE	YES	41	0	0.32	1	0.1129	0.0821	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,AC091199.1->chr17:36158869-36162759:-	HEC50B_ENDOMETRIUM	0.32	1	0.195	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	4	33	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	14	0	0.73	1	0.0411	0.3387	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.73	1	0.3798	FALSE	344	821	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	3	37	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1341	0	0.03	1	0.0308	0.3797	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.03	1	0.4105	FALSE	344	827	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	11	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.1129	0.0513	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC50B_ENDOMETRIUM	0.89	1	0.1642	FALSE	515	4851	409	746	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	CAPN15--RAB11FIP3	12	0	CAPN15	1313	chr16:578029:+	RAB11FIP3	21750	chr16:521295:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1232	0	LOCAL_REARRANGEMENT:+:[4706],CAPN15->calpain_15,chr16:577717-604636:+,RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+	HEC50B_ENDOMETRIUM	1	1	0.1232	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	NRIP1--AF127936.7	9	11	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	60	0	0.25	1	0.0924	0.1129	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC50B_ENDOMETRIUM	0.25	1	0.2053	FALSE	164	806	69	479	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	5	25	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10119	0	0	1	0.0513	0.2566	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0	1	0.3079	FALSE	344	827	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	9	9	MT-ND5	2794	chrM:14130:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0924	0.0924	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	1	1	0.1848	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	9	7	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	16034	1	0	0.94	0.0924	0.0718	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	0.94	0.1642	FALSE	231	217	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	PPP2R4--IFIH1	5	22	PPP2R4	1682	chr9:131873910:+	IFIH1	24893	chr2:163167443:-	ONLY_REF_SPLICE	YES	155	2	0.15	0.93	0.0513	0.2258	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	HEC50B_ENDOMETRIUM	0.15	0.93	0.2771	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	HSP90AB1--MT-RNR2	10	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2445	0	0	1	0.1026	0.0103	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEC50B_ENDOMETRIUM	0	1	0.1129	FALSE	13	9	0	364	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	SLC1A5--MT-ND4L	9	5	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	807	0	0.02	1	0.0924	0.0513	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.02	1	0.1437	FALSE	0	0	0	189	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO1	9	2	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	99	16654	0.1	0	0.0924	0.0205	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	0	0.1	0.1129	FALSE	183	104	9	328	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	6	14	MT-ND5	2766	chrM:14102:+	MT-ATP8	5869	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0.1437	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	1	1	0.2053	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	NRIP1--AF127936.7	8	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	35	0	0.27	1	0.0821	0.0513	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC50B_ENDOMETRIUM	0.27	1	0.1334	FALSE	125	705	46	456	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0924	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HEC50B_ENDOMETRIUM	1	1	0.0924	TRUE	0	0	0	434	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	RP11-6N13.1--CTD-2374C24.1	8	4	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0821	0.0411	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	HEC50B_ENDOMETRIUM	1	1	0.1232	TRUE	5	4	0	46	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	C15orf57--CBX3	4	19	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	46	37	0.33	0.38	0.0411	0.195	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEC50B_ENDOMETRIUM	0.33	0.38	0.2361	TRUE	267	562	48	632	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	5	15	MT-ND5	2795	chrM:14131:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0.1539	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	1	1	0.2052	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	5	15	MT-ND5	2813	chrM:14149:+	MT-ATP8	5870	chrM:8423:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0.1539	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	1	1	0.2052	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	7	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0718	0.0718	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC50B_ENDOMETRIUM	0.88	1	0.1436	FALSE	407	2205	196	549	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	5	14	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	139	0	0.12	1	0.0513	0.1437	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.12	1	0.195	FALSE	344	827	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND6--MT-TE	8	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0821	0.0205	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC50B_ENDOMETRIUM	1	1	0.1026	FALSE	499	1288	110	792	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	TAF15--C17orf50	7	5	TAF15	8375	chr17:34151202:+	C17orf50	22944	chr17:34091026:+	ONLY_REF_SPLICE	YES	525	0	0.02	1	0.0718	0.0513	LOCAL_REARRANGEMENT:+:[44361],TAF15->Oncogene{Bushman},TATA-box_binding_protein_associated_factor_15,chr17:34136459-34191619:+,C17orf50->chr17:34087916-34092098:+,chromosome_17_open_reading_frame_50	HEC50B_ENDOMETRIUM	0.02	1	0.1231	TRUE	0	0	0	1	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	TAF15--C17orf50	7	5	TAF15	9884	chr17:34160945:+	C17orf50	22944	chr17:34091026:+	ONLY_REF_SPLICE	YES	511	0	0.02	1	0.0718	0.0513	LOCAL_REARRANGEMENT:+:[44361],TAF15->Oncogene{Bushman},TATA-box_binding_protein_associated_factor_15,chr17:34136459-34191619:+,C17orf50->chr17:34087916-34092098:+,chromosome_17_open_reading_frame_50	HEC50B_ENDOMETRIUM	0.02	1	0.1231	TRUE	0	0	0	1	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	LSM12--RP11-546M21.6	8	0	LSM12	3290	chr17:42141169:-	RP11-546M21.6	12469	chr17:42197351:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0821	0	LOCAL_INVERSION:-:+:[48293],LSM12->LSM12_homolog,chr17:42112003-42144987:-,RP11-546M21.6->chr17:42193280-42197963:+	HEC50B_ENDOMETRIUM	1	1	0.0821	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	4	16	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0.1642	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	1	1	0.2053	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND6--MT-TE	5	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.85	1	0.0513	0.1232	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC50B_ENDOMETRIUM	0.85	1	0.1745	FALSE	499	1288	110	792	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	7	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	YES	17357	21	0	0.3	0.0718	0.0205	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	0.3	0.0923	FALSE	231	217	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	4	14	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	88	0	0.17	1	0.0411	0.1437	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.17	1	0.1848	FALSE	344	826	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-TA--MT-TC	6	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0.0616	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC50B_ENDOMETRIUM	1	1	0.1232	FALSE	462	80	0	856	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	6	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0616	0.0616	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC50B_ENDOMETRIUM	1	1	0.1232	FALSE	467	2173	244	435	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND6--MT-TE	4	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0.1334	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC50B_ENDOMETRIUM	1	1	0.1745	FALSE	499	1288	110	792	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO1	7	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0718	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	1	1	0.0718	FALSE	183	104	9	328	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	5	8	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	17773	0	0	1	0.0513	0.0821	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.1334	FALSE	231	217	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	7	0	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0718	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	1	1	0.0718	FALSE	230	193	14	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	4	12	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	3	0	0.84	1	0.0411	0.1232	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0.84	1	0.1643	FALSE	209	205	15	279	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	3	16	MT-ND5	2764	chrM:14100:+	MT-ATP8	5833	chrM:8386:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0.1642	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	1	1	0.195	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO2	6	3	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	65	1	0.12	0.9	0.0616	0.0308	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC50B_ENDOMETRIUM	0.12	0.9	0.0924	FALSE	59	21	0	114	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	5	7	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15589	0	0	1	0.0513	0.0718	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.1231	FALSE	231	215	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	3	15	MT-ND5	2792	chrM:14128:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0.1539	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	1	1	0.1847	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	5	7	MT-ND5	2687	chrM:14023:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	677	0	0.02	1	0.0513	0.0718	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0.02	1	0.1231	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO1	6	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	134	19363	0.06	0	0.0616	0.0205	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	0	0.06	0.0821	FALSE	183	104	9	328	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	6	2	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	18629	0	0	1	0.0616	0.0205	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.0821	FALSE	231	217	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	PPP2R4--IFIH1	1	22	PPP2R4	1842	chr9:131874070:+	IFIH1	24893	chr2:163167443:-	ONLY_REF_SPLICE	NO	179	2	0.11	0.92	0.0103	0.2258	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	HEC50B_ENDOMETRIUM	0.11	0.92	0.2361	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	FTH1--GNB2L1	6	1	FTH1	1228	chr11:61734905:-	GNB2L1	10551	chr5:180670807:-	INCL_NON_REF_SPLICE	YES	5542	427	0	0.02	0.0616	0.0103	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-	HEC50B_ENDOMETRIUM	0	0.02	0.0719	FALSE	0	0	0	2	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2426	0	0	1	0.0616	0.0103	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEC50B_ENDOMETRIUM	0	1	0.0719	FALSE	13	9	0	364	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	6	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	14274	8	0	0.47	0.0616	0.0103	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	0.47	0.0719	FALSE	231	204	14	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	6	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	13973	0	0	1	0.0616	0.0103	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.0719	FALSE	230	198	14	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	3	13	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0.1334	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	1	1	0.1642	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	C11orf68--DRAP1	6	0	C11orf68	1087	chr11:65686502:-	DRAP1	6880	chr11:65687297:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	HEC50B_ENDOMETRIUM	1	1	0.0616	TRUE	0	1	0	6	1	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	COG5--GPR22	5	4	COG5	7293	chr7:107167682:-	GPR22	34311	chr7:107110641:+	ONLY_REF_SPLICE	YES	74	0	0.11	1	0.0513	0.0411	NEIGHBORS_OVERLAP:-:+:[5635],COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5,GPR22->G_protein-coupled_receptor_22,chr7:107110463-107116098:+	HEC50B_ENDOMETRIUM	0.11	1	0.0924	FALSE	0	0	0	1	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	3	12	MT-ND4	2255	chrM:12014:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	2328	0	0.01	1	0.0308	0.1232	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0.01	1	0.154	FALSE	216	209	16	281	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	4	8	MT-ND4	2157	chrM:11916:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9434	0	0	1	0.0411	0.0821	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.1232	FALSE	231	215	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-CO1	4	8	MT-ND5	2830	chrM:14166:+	MT-CO1	6310	chrM:6401:+	INCL_NON_REF_SPLICE	NO	0	16579	1	0	0.0411	0.0821	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	0	1	0.1232	FALSE	8	10	2	9	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO2	5	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	61	0	0.12	1	0.0513	0.0308	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC50B_ENDOMETRIUM	0.12	1	0.0821	FALSE	59	21	0	114	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	3	11	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	29	0	0.33	1	0.0308	0.1129	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.33	1	0.1437	FALSE	344	826	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO1	5	2	MT-ATP6	1109	chrM:8635:+	MT-CO1	5163	chrM:6385:+	INCL_NON_REF_SPLICE	YES	112	17157	0.06	0	0.0513	0.0205	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	0	0.06	0.0718	FALSE	183	104	9	328	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO1	4	6	MT-ATP6	1568	chrM:9094:+	MT-CO1	5184	chrM:6406:+	INCL_NON_REF_SPLICE	YES	2	16936	0.83	0	0.0411	0.0616	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	0	0.83	0.1027	FALSE	183	104	9	328	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	4	6	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16643	0	0	1	0.0411	0.0616	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.1027	FALSE	231	217	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	3	10	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	5672	0	0	1	0.0308	0.1026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.1334	FALSE	222	212	16	282	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	5	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17683	0	0	1	0.0513	0.0205	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.0718	FALSE	231	205	14	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	4	6	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	16804	0	0	1	0.0411	0.0616	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.1027	FALSE	231	217	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	3	10	MT-ND5	2583	chrM:13919:+	MT-ATP8	5869	chrM:8422:+	INCL_NON_REF_SPLICE	YES	2615	0	0	1	0.0308	0.1026	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.1334	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	3	10	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	2492	0	0.01	1	0.0308	0.1026	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0.01	1	0.1334	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO2	5	1	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	44	1	0.12	0.86	0.0513	0.0103	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC50B_ENDOMETRIUM	0.12	0.86	0.0616	FALSE	59	21	0	114	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	5	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	13619	0	0	1	0.0513	0.0103	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.0616	FALSE	230	193	14	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	LASP1--MT-ND4L	5	0	LASP1	12948	chr17:37075343:+	MT-ND4L	18644	chrM:10485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0	LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	1	1	0.0513	FALSE	0	0	0	7	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO1	4	4	MT-ATP6	1150	chrM:8676:+	MT-CO1	5195	chrM:6417:+	INCL_NON_REF_SPLICE	YES	116	16490	0.06	0	0.0411	0.0411	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	0	0.06	0.0822	FALSE	183	104	9	328	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	3	8	MT-ND4	1903	chrM:11662:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	17419	0	0	1	0.0308	0.0821	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.1129	FALSE	231	217	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	3	8	MT-ND4	2089	chrM:11848:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12861	0	0	1	0.0308	0.0821	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.1129	FALSE	231	215	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	5	0	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	1	1	0.0513	FALSE	230	193	14	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	5	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	1	1	0.0513	FALSE	231	205	14	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MTND4P12--MT-CO2	5	0	MTND4P12	1998	chr5:134262729:-	MT-CO2	5521	chrM:7729:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC50B_ENDOMETRIUM	1	1	0.0513	FALSE	1	1	0	1	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	SYNRG--AC091199.1	3	8	SYNRG	6868	chr17:35944756:-	AC091199.1	39330	chr17:36162298:-	ONLY_REF_SPLICE	YES	41	0	0.21	1	0.0308	0.0821	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,AC091199.1->chr17:36158869-36162759:-	HEC50B_ENDOMETRIUM	0.21	1	0.1129	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	WTAPP1--RUVBL1	5	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0513	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	HEC50B_ENDOMETRIUM	1	1	0.0513	TRUE	9	252	6	66	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO2	4	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	61	1	0.1	0.88	0.0411	0.0308	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC50B_ENDOMETRIUM	0.1	0.88	0.0719	FALSE	59	21	0	114	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	4	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18060	0	0	1	0.0411	0.0308	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.0719	FALSE	231	217	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	3	7	MT-ND4	1903	chrM:11662:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	NO	17419	1	0	0.91	0.0308	0.0718	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	0.91	0.1026	FALSE	231	217	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	3	7	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	8168	8	0	0.56	0.0308	0.0718	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	0.56	0.1026	FALSE	231	215	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	4	3	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	3659	0	0	1	0.0411	0.0308	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.0719	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	3	7	MT-ND5	2712	chrM:14048:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	YES	16	1	0.38	0.91	0.0308	0.0718	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0.38	0.91	0.1026	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	3	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0308	0.0718	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC50B_ENDOMETRIUM	0.83	1	0.1026	FALSE	275	511	55	178	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	3	6	MT-ND5	2518	chrM:13854:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	YES	2664	1	0	0.9	0.0308	0.0616	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	0.9	0.0924	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	3	6	MT-ND5	2514	chrM:13850:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2706	0	0	1	0.0308	0.0616	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.0924	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-CO1	3	6	MT-ND5	2846	chrM:14182:+	MT-CO1	6327	chrM:6418:+	INCL_NON_REF_SPLICE	YES	0	16481	1	0	0.0308	0.0616	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	0	1	0.0924	FALSE	8	10	2	9	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	RP11-634B7.4--TRIM58	4	2	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0411	0.0205	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	HEC50B_ENDOMETRIUM	0.86	1	0.0616	TRUE	158	633	76	73	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	CTD-2337A12.1--CAST	4	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	41	1	0.11	0.0411	0.0103	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HEC50B_ENDOMETRIUM	0.11	1	0.0514	TRUE	347	1186	183	220	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	IPO8--ASPSCR1	1	13	IPO8	1423	chr12:30848498:-	ASPSCR1	50010	chr17:79967362:+	ONLY_REF_SPLICE	YES	102	77	0.12	0.15	0.0103	0.1334	IPO8->chr12:30781922-30848920:-,importin_8,ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+	HEC50B_ENDOMETRIUM	0.12	0.15	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO1	3	5	MT-ATP6	1153	chrM:8679:+	MT-CO1	4732	chrM:5954:+	INCL_NON_REF_SPLICE	YES	119	1	0.06	0.89	0.0308	0.0513	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	0.06	0.89	0.0821	FALSE	182	97	9	327	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO1	3	5	MT-ATP6	1177	chrM:8703:+	MT-CO1	4735	chrM:5957:+	INCL_NON_REF_SPLICE	YES	152	1	0.05	0.89	0.0308	0.0513	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	0.05	0.89	0.0821	FALSE	182	97	9	327	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO2	4	1	MT-ATP6	1142	chrM:8668:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	53	3	0.09	0.62	0.0411	0.0103	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC50B_ENDOMETRIUM	0.09	0.62	0.0514	FALSE	59	21	0	114	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	40	6121	0.11	0	0.0411	0.0103	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEC50B_ENDOMETRIUM	0	0.11	0.0514	FALSE	63	17	1	58	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	42	0	0.11	1	0.0411	0.0103	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEC50B_ENDOMETRIUM	0.11	1	0.0514	FALSE	63	17	1	58	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	4	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13973	0	0	1	0.0411	0.0103	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.0514	FALSE	230	198	14	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	3	5	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	5263	0	0	1	0.0308	0.0513	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	1	0.0821	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	4	1	MT-ND5	1627	chrM:12963:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	3475	30	0	0.14	0.0411	0.0103	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	0.14	0.0514	FALSE	42	36	7	104	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	SLC1A5--MT-ND4L	3	5	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	806	0	0.01	1	0.0308	0.0513	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	0.01	1	0.0821	FALSE	0	0	0	189	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	C11orf68--DRAP1	4	0	C11orf68	1078	chr11:65686511:-	DRAP1	6544	chr11:65686961:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	HEC50B_ENDOMETRIUM	1	1	0.0411	TRUE	0	1	0	6	1	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	FTH1--ACTB	4	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HEC50B_ENDOMETRIUM	1	1	0.0411	TRUE	1	0	0	97	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO1	3	4	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	132	17347	0.05	0	0.0308	0.0411	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	0	0.05	0.0719	FALSE	183	104	9	328	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO1	4	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	1	1	0.0411	FALSE	183	104	9	328	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO1	3	4	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	5	19660	0.58	0	0.0308	0.0411	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	0	0.58	0.0719	FALSE	183	104	9	328	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO1	3	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	134	17182	0.05	0	0.0308	0.0411	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	0	0.05	0.0719	FALSE	183	104	9	328	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND3--MT-ATP8	4	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	1	1	0.0411	FALSE	351	233	23	137	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC50B_ENDOMETRIUM	1	1	0.0411	FALSE	499	1288	110	792	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	PLXNB1--PFKFB4	4	0	PLXNB1	1178	chr3:48471417:-	PFKFB4	31220	chr3:48587667:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0411	0	LOCAL_REARRANGEMENT:-:[83523],PLXNB1->Oncogene{Bushman},chr3:48445261-48471594:-,plexin_B1,PFKFB4->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_4,chr3:48555117-48599448:-	HEC50B_ENDOMETRIUM	1	1	0.0411	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	ANKHD1--RICTOR	3	3	ANKHD1	1460	chr5:139781858:+	RICTOR	53031	chr5:38978752:-	ONLY_REF_SPLICE	YES	51	16	0.11	0.27	0.0308	0.0308	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-	HEC50B_ENDOMETRIUM	0.11	0.27	0.0616	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	3	3	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	17442	20	0	0.23	0.0308	0.0308	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	0.23	0.0616	FALSE	231	217	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	RP11-419K12.1--GSDMC	3	3	RP11-419K12.1	3497	chr8:130692174:-	GSDMC	11577	chr8:130778039:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0.0308	LOCAL_REARRANGEMENT:-:[64517],RP11-419K12.1->chr8:130691381-130695925:-,GSDMC->chr8:130760442-130799134:-,gasdermin_C	HEC50B_ENDOMETRIUM	1	1	0.0616	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	3	2	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	17309	189	0	0.03	0.0308	0.0205	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	0.03	0.0513	FALSE	231	217	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-CO1	3	2	MT-ND5	2543	chrM:13879:+	MT-CO1	6330	chrM:6421:+	INCL_NON_REF_SPLICE	YES	2953	16517	0	0	0.0308	0.0205	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	0	0	0.0513	FALSE	8	12	2	9	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	SAMD5--SASH1	3	2	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	6	11	0.45	0.31	0.0308	0.0205	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HEC50B_ENDOMETRIUM	0.31	0.45	0.0513	TRUE	53	396	64	110	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	ANXA2--NARG2	3	1	ANXA2	15528	chr15:60674541:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	YES	2637	70	0	0.05	0.0308	0.0103	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	HEC50B_ENDOMETRIUM	0	0.05	0.0411	FALSE	0	2	0	3	2	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO2	3	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	44	1	0.08	0.8	0.0308	0.0103	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC50B_ENDOMETRIUM	0.08	0.8	0.0411	FALSE	59	21	0	114	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO2	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	42	0	0.09	1	0.0308	0.0103	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC50B_ENDOMETRIUM	0.09	1	0.0411	FALSE	59	21	0	114	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO2	3	1	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	42	1	0.09	0.8	0.0308	0.0103	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC50B_ENDOMETRIUM	0.09	0.8	0.0411	FALSE	59	21	0	114	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1158	chrM:8684:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	52	6520	0.07	0	0.0308	0.0103	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEC50B_ENDOMETRIUM	0	0.07	0.0411	FALSE	63	17	1	58	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	46	6617	0.08	0	0.0308	0.0103	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEC50B_ENDOMETRIUM	0	0.08	0.0411	FALSE	63	17	1	58	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1078	chrM:8604:+	MT-RNR2	5293	chrM:2282:+	INCL_NON_REF_SPLICE	YES	39	6268	0.09	0	0.0308	0.0103	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEC50B_ENDOMETRIUM	0	0.09	0.0411	FALSE	63	17	1	58	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	3	1	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	18957	8	0	0.33	0.0308	0.0103	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	0.33	0.0411	FALSE	231	217	16	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	3	1	MT-ND5	1969	chrM:13305:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4608	9	0	0.31	0.0308	0.0103	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	0.31	0.0411	FALSE	43	37	8	105	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	3	1	MT-ND5	1701	chrM:13037:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	NO	3076	9	0	0.31	0.0308	0.0103	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	0	0.31	0.0411	FALSE	42	36	7	104	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MYH9--IFT27	3	1	MYH9	5055	chr22:36737415:-	IFT27	48188	chr22:37163906:-	ONLY_REF_SPLICE	YES	804	57	0	0.07	0.0308	0.0103	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,IFT27->chr22:37154246-37172300:-,intraflagellar_transport_27	HEC50B_ENDOMETRIUM	0	0.07	0.0411	FALSE	0	0	0	1	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	EIF1--RPL5	3	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	HEC50B_ENDOMETRIUM	1	1	0.0308	TRUE	0	0	0	39	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	FAM228B--MFSD2B	3	0	FAM228B	16165	chr2:24369956:+	MFSD2B	26379	chr2:24236155:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	LOCAL_REARRANGEMENT:+:[13205],FAM228B->chr2:24299396-24392509:+,family_with_sequence_similarity_228_member_B,MFSD2B->chr2:24232951-24286191:+,major_facilitator_superfamily_domain_containing_2B	HEC50B_ENDOMETRIUM	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO1	3	0	MT-ATP6	1380	chrM:8906:+	MT-CO1	5953	chrM:7175:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	1	1	0.0308	FALSE	183	104	9	328	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	1	1	0.0308	FALSE	183	104	9	328	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ATP8	3	0	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	1	1	0.0308	FALSE	230	191	14	283	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	1	1	0.0308	FALSE	344	821	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC50B_ENDOMETRIUM	1	1	0.0308	FALSE	344	821	44	306	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-ATP8	3	0	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC50B_ENDOMETRIUM	1	1	0.0308	FALSE	41	30	6	102	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MT-ND5--MT-CO1	3	0	MT-ND5	2772	chrM:14108:+	MT-CO1	7084	chrM:7175:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC50B_ENDOMETRIUM	1	1	0.0308	FALSE	8	12	2	9	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	MTND4P12--MT-CO2	3	0	MTND4P12	1984	chr5:134262743:-	MT-CO2	5583	chrM:7791:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC50B_ENDOMETRIUM	1	1	0.0308	FALSE	1	1	0	1	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HEC50B_ENDOMETRIUM	1	1	0.0308	TRUE	0	0	0	434	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	SRGAP1--RPS11P6	3	0	SRGAP1	1591	chr12:64238663:+	RPS11P6	36583	chr12:64621654:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	NEIGHBORS[74504],SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,RPS11P6->chr12:64616117-64790845:+,ribosomal_protein_S11_pseudogene_6	HEC50B_ENDOMETRIUM	1	1	0.0308	FALSE	0	2	0	2	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	SYNJ2--TMEM181	1	8	SYNJ2	7496	chr6:158464431:+	TMEM181	46949	chr6:159028276:+	ONLY_REF_SPLICE	YES	45	54	0.17	0.14	0.0103	0.0821	SYNJ2->chr6:158402888-158520208:+,synaptojanin_2,TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181	HEC50B_ENDOMETRIUM	0.14	0.17	0.0924	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	ARID1B--RPS20	1	7	ARID1B	8327	chr6:157256710:+	RPS20	41559	chr8:56985831:-	ONLY_REF_SPLICE	YES	27	3351	0.23	0	0.0103	0.0718	ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+,RPS20->chr8:56979854-56987069:-,ribosomal_protein_S20	HEC50B_ENDOMETRIUM	0	0.23	0.0821	FALSE	0	0	0	1	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	PLXNB1--PFKFB4	2	2	PLXNB1	1933	chr3:48470662:-	PFKFB4	31220	chr3:48587667:-	ONLY_REF_SPLICE	YES	3	31	0.57	0.11	0.0205	0.0205	LOCAL_REARRANGEMENT:-:[83523],PLXNB1->Oncogene{Bushman},chr3:48445261-48471594:-,plexin_B1,PFKFB4->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_4,chr3:48555117-48599448:-	HEC50B_ENDOMETRIUM	0.11	0.57	0.041	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	RP11-6N13.1--CTD-2374C24.1	2	2	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0.0205	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	HEC50B_ENDOMETRIUM	1	1	0.041	TRUE	5	12	0	42	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	ANKHD1--RICTOR	2	1	ANKHD1	1460	chr5:139781858:+	RICTOR	55169	chr5:38972061:-	ONLY_REF_SPLICE	YES	51	14	0.06	0.18	0.0205	0.0103	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-	HEC50B_ENDOMETRIUM	0.06	0.18	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	AC002116.7--EIF4A1	2	0	AC002116.7	3379	chr19:36510286:+	EIF4A1	10057	chr17:7478437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	AC002116.7->chr19:36505410-36536874:+,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	HEC50B_ENDOMETRIUM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	ANXA2--NARG2	2	0	ANXA2	11842	chr15:60678227:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	HEC50B_ENDOMETRIUM	1	1	0.0205	TRUE	0	0	0	2	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	CBFB--MYLPF	2	0	CBFB	1698	chr16:67063716:+	MYLPF	16324	chr16:30386143:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	HEC50B_ENDOMETRIUM	1	1	0.0205	TRUE	0	0	0	2	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	HM13--PRMT8	2	0	HM13	1307	chr20:30102537:+	PRMT8	26206	chr12:3649772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13,PRMT8->chr12:3490515-3703139:+,protein_arginine_methyltransferase_8	HEC50B_ENDOMETRIUM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	POLR3K--SEC24C	2	0	POLR3K	1153	chr16:103476:-	SEC24C	20486	chr10:75528568:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K,SEC24C->SEC24_homolog_C,_COPII_coat_complex_component,chr10:75504120-75531919:+	HEC50B_ENDOMETRIUM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	ANKHD1--RICTOR	1	2	ANKHD1	1460	chr5:139781858:+	RICTOR	54099	chr5:38975706:-	ONLY_REF_SPLICE	YES	51	18	0.06	0.14	0.0103	0.0205	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-	HEC50B_ENDOMETRIUM	0.06	0.14	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	PLCB4--PLCB1	1	2	PLCB4	1444	chr20:9049853:+	PLCB1	80206	chr20:8755186:+	ONLY_REF_SPLICE	NO	146	11	0.02	0.21	0.0103	0.0205	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	HEC50B_ENDOMETRIUM	0.02	0.21	0.0308	TRUE	0	0	0	1	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	PLXNB1--PFKFB4	1	2	PLXNB1	2986	chr3:48466690:-	PFKFB4	31220	chr3:48587667:-	ONLY_REF_SPLICE	NO	2	31	0.6	0.09	0.0103	0.0205	LOCAL_REARRANGEMENT:-:[83523],PLXNB1->Oncogene{Bushman},chr3:48445261-48471594:-,plexin_B1,PFKFB4->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_4,chr3:48555117-48599448:-	HEC50B_ENDOMETRIUM	0.09	0.6	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	APP--UBB	1	1	APP	1565	chr21:27542882:-	UBB	33280	chr17:16285216:+	ONLY_REF_SPLICE	YES	2485	309	0	0.01	0.0103	0.0103	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,UBB->chr17:16284112-16286059:+,ubiquitin_B	HEC50B_ENDOMETRIUM	0	0.01	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	CSNK1E--PHF20	1	1	CSNK1E	3868	chr22:38757404:-	PHF20	27593	chr20:34389413:+	ONLY_REF_SPLICE	YES	1	2	0.67	0.5	0.0103	0.0103	CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	HEC50B_ENDOMETRIUM	0.5	0.67	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	EEF2--RPS21	1	1	EEF2	3360	chr19:3983108:-	RPS21	13464	chr20:60962377:+	ONLY_REF_SPLICE	NO	3794	2	0	0.5	0.0103	0.0103	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS21->chr20:60962172-60963576:+,ribosomal_protein_S21	HEC50B_ENDOMETRIUM	0	0.5	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	OSBPL11--PHF20	1	1	OSBPL11	1454	chr3:125313481:-	PHF20	23485	chr20:34389413:+	ONLY_REF_SPLICE	YES	23	2	0.08	0.5	0.0103	0.0103	OSBPL11->chr3:125247702-125313934:-,oxysterol_binding_protein_like_11,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	HEC50B_ENDOMETRIUM	0.08	0.5	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000831
HEC50B_ENDOMETRIUM	PLCB4--PLCB1	1	1	PLCB4	2500	chr20:9076989:+	PLCB1	91111	chr20:8942843:+	ONLY_REF_SPLICE	YES	167	0	0.01	1	0.0103	0.0103	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	HEC50B_ENDOMETRIUM	0.01	1	0.0206	FALSE	0	1	0	2	1	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	POLR3K--RPL30	1	1	POLR3K	1153	chr16:103476:-	RPL30	8960	chr8:99057627:-	ONLY_REF_SPLICE	YES	147	51	0.01	0.04	0.0103	0.0103	POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	HEC50B_ENDOMETRIUM	0.01	0.04	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	PROSC--SRSF1	1	1	PROSC	2996	chr8:37623873:+	SRSF1	14701	chr17:56082402:-	ONLY_REF_SPLICE	YES	124	676	0.02	0	0.0103	0.0103	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Breast=[count:2=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=3,Brain_-_Hippocampus=1,Thyroid=1,Adipose_-_Subcutaneous=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	HEC50B_ENDOMETRIUM	0	0.02	0.0206	FALSE	6	2	0	9	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	5	13	0.29	0.13	0.0103	0.0103	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEC50B_ENDOMETRIUM	0.13	0.29	0.0206	FALSE	0	23	1	67	0	FALSE	ACH-000831
HEC50B_ENDOMETRIUM	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	24	0.29	0.08	0.0103	0.0103	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEC50B_ENDOMETRIUM	0.08	0.29	0.0206	FALSE	16	356	14	466	0	FALSE	ACH-000831
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	127	47	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6806	0.6219	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.3025	TRUE	508	994	45	981	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--PRDM7	64	39	RUNX1	21108	chr21:36421139:-	PRDM7	54621	chr16:90127927:-	ONLY_REF_SPLICE	YES	66	19	0.61	0.84	0.8469	0.5161	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,PRDM7->PR_domain_7,chr16:90122974-90158480:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.84	1.363	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	72	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	269	7	0.22	0.92	0.9528	0.0662	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.92	1.019	TRUE	519	3926	326	965	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	62	30	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	56	107	0.62	0.46	0.8204	0.397	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.62	1.2174	TRUE	181	1564	124	196	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	54	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7146	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7146	TRUE	0	0	0	518	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ETV6--RUNX1	48	17	ETV6	11057	chr12:12022903:+	RUNX1	42872	chr21:36265260:-	ONLY_REF_SPLICE	YES	0	65	1	0.5	0.6352	0.225	Mitelman{ALL=2},chimerdb_omim:{acutelymphoblasticleukemia},chimerdb_omim:{pediatricAcuteLymphocyticLeukemia},chimerdb_pubmed{Bcell lineage ALL, CML,Blineage acute lymphoblastic leukaemias (ALL),early Blineage leukemia,CML, ALL,childhood acute lymphoblastic leukemia,childhood acute lymphoblastic leukaemia (ALL), acute myeloid leukaemia (AML),severalleukaemia,acute lymphoblastic leukaemia ,leukemia,childhood acute lymphoblastic leukaemia(ALL),pediatric Bcell precursor acute lymphoblastic leukemia,Leukemia,childhood Blineage acute lymphoblastic leukemia (BALL),acute lymphoblastic leukemia (ALL),paediatric acute lymphoblastic leukaemia (ALL),Bcell precursor acute lymphoblastic leukaemia in children, good prognosis,acute myeloid leukemia (AML),childhood Bcell acute lymphoblastic leukemia(ALL),B cell acute lymphoblastic leukemia (ALL),Bprecursor acute lymphoblastic leukaemia(Bprecursor ALL),Bprecursor acute lymphoblastic leukaemia,childhood acute lymphoblastic leukemia (ALL),human leukemia,Acute lymphoblastic leukemia,acute leukemia, acute lymphoblastic leukemia,acute lymphoblastic leukaemia (ALL),acute lymphoblastic leukemia(ALL),preBcell acute lymphoblastic leukemia(PBCALL),childhood precursorB cell acute lymphoblastic leukemia,Acute lymphoblastic leukaemia(ALL),acute lymphoblastic leukemia,childhood Blineage acute lymphoblastic leukemia,childhood acute lymphoblastic leukaemia,TEL/AML2positive leukemia, acute lymphoblastic leukemia (ALL),acute lymphoblastic leukemias in children,Acute leukemia,Blineage childhood acute lymphoblastic leukemia,childhood Bprecursor acute lymphoblastic leukemia (ALL),acute lymphoblastic leukaemia,Bcell precursor acute lymphoblastic leukemia,acute lymphocytic leukemia (ALL),childhood Bcell precursor (BCP) acute lymphoblastic leukemia (ALL)},ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.8602	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	44	15	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5822	0.1985	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7807	FALSE	416	2512	207	587	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--PRDM7	32	49	RUNX1	21108	chr21:36421139:-	PRDM7	51431	chr16:90133318:-	ONLY_REF_SPLICE	YES	66	0	0.55	1	0.4234	0.6484	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,PRDM7->PR_domain_7,chr16:90122974-90158480:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	1.0718	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	35	2	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	50	1850	0.43	0.02	0.4631	0.0265	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.43	0.4896	TRUE	0	0	0	434	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--PRDM7	22	46	RUNX1	21108	chr21:36421139:-	PRDM7	53948	chr16:90128600:-	ONLY_REF_SPLICE	YES	66	7	0.51	0.91	0.2911	0.6087	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,PRDM7->PR_domain_7,chr16:90122974-90158480:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.91	0.8998	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	20	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2647	0.0662	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3309	FALSE	462	80	0	856	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--PRDM7	5	47	RUNX1	21108	chr21:36421139:-	PRDM7	53638	chr16:90128910:-	ONLY_REF_SPLICE	YES	66	0	0.44	1	0.0662	0.6219	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,PRDM7->PR_domain_7,chr16:90122974-90158480:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.6881	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	14	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1853	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1853	FALSE	499	1288	110	792	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1191	0.0926	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2117	FALSE	499	1288	110	792	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	10	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.3	1	0.1323	0.0132	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.1455	FALSE	292	1546	117	613	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	10	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1323	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1323	FALSE	0	24	0	62	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ETV6--RUNX1	6	10	ETV6	11057	chr12:12022903:+	RUNX1	46605	chr21:36259393:-	ONLY_REF_SPLICE	YES	0	128	1	0.11	0.0794	0.1323	Mitelman{ALL=2},chimerdb_omim:{acutelymphoblasticleukemia},chimerdb_omim:{pediatricAcuteLymphocyticLeukemia},chimerdb_pubmed{Bcell lineage ALL, CML,Blineage acute lymphoblastic leukaemias (ALL),early Blineage leukemia,CML, ALL,childhood acute lymphoblastic leukemia,childhood acute lymphoblastic leukaemia (ALL), acute myeloid leukaemia (AML),severalleukaemia,acute lymphoblastic leukaemia ,leukemia,childhood acute lymphoblastic leukaemia(ALL),pediatric Bcell precursor acute lymphoblastic leukemia,Leukemia,childhood Blineage acute lymphoblastic leukemia (BALL),acute lymphoblastic leukemia (ALL),paediatric acute lymphoblastic leukaemia (ALL),Bcell precursor acute lymphoblastic leukaemia in children, good prognosis,acute myeloid leukemia (AML),childhood Bcell acute lymphoblastic leukemia(ALL),B cell acute lymphoblastic leukemia (ALL),Bprecursor acute lymphoblastic leukaemia(Bprecursor ALL),Bprecursor acute lymphoblastic leukaemia,childhood acute lymphoblastic leukemia (ALL),human leukemia,Acute lymphoblastic leukemia,acute leukemia, acute lymphoblastic leukemia,acute lymphoblastic leukaemia (ALL),acute lymphoblastic leukemia(ALL),preBcell acute lymphoblastic leukemia(PBCALL),childhood precursorB cell acute lymphoblastic leukemia,Acute lymphoblastic leukaemia(ALL),acute lymphoblastic leukemia,childhood Blineage acute lymphoblastic leukemia,childhood acute lymphoblastic leukaemia,TEL/AML2positive leukemia, acute lymphoblastic leukemia (ALL),acute lymphoblastic leukemias in children,Acute leukemia,Blineage childhood acute lymphoblastic leukemia,childhood Bprecursor acute lymphoblastic leukemia (ALL),acute lymphoblastic leukaemia,Bcell precursor acute lymphoblastic leukemia,acute lymphocytic leukemia (ALL),childhood Bcell precursor (BCP) acute lymphoblastic leukemia (ALL)},ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.2117	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0926	0.0529	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1455	FALSE	462	80	0	856	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	8	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1059	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1059	TRUE	0	0	0	434	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	7	2	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	50	1848	0.15	0	0.0926	0.0265	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.15	0.1191	FALSE	0	0	0	434	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--PRDM7	1	22	RUNX1	21108	chr21:36421139:-	PRDM7	56800	chr16:90124942:-	ONLY_REF_SPLICE	YES	66	24	0.26	0.49	0.0132	0.2911	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,PRDM7->PR_domain_7,chr16:90122974-90158480:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.49	0.3043	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	5	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0662	0.0662	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1324	FALSE	93	270	15	244	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WTAPP1--RUVBL1	6	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0794	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0794	TRUE	9	252	6	66	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--CHMP1A	4	3	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	151	153	0.04	0.04	0.0529	0.0397	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.04	0.0926	TRUE	1	20	1	28	3	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--CHMP1A	4	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0529	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0529	TRUE	95	74	6	34	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	4	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0529	TRUE	0	0	0	100	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0529	FALSE	499	1288	110	792	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SETD8--CDK2AP1	4	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0529	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0529	TRUE	0	0	0	18	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	3	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	53	0	0.07	1	0.0397	0.0132	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0529	FALSE	272	151	14	158	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM60A--DERA	3	0	FAM60A	2035	chr12:31478958:-	DERA	23155	chr12:16109870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0397	0	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	FALSE	462	80	0	856	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	TRUE	0	0	0	434	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--TBCA	3	0	RCC1	2175	chr1:28834672:+	TBCA	22542	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0397	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	TRUE	0	3	0	7	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	TRUE	22	156	2	142	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	90	0	0.04	1	0.0265	0.0265	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.053	FALSE	125	705	46	456	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP192--LDLRAD4	2	0	CEP192	30314	chr18:13073184:+	LDLRAD4	70130	chr18:13621116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	NEIGHBORS[92446],CEP192->centrosomal_protein_192,chr18:12991361-13125051:+,LDLRAD4->chr18:13217497-13652754:+,low_density_lipoprotein_receptor_class_A_domain_containing_4	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	FALSE	0	0	0	1	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--GNB1	2	0	DANCR	1530	chr4:53579126:+	GNB1	9431	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	8	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	135	0	0.04	1	0.0132	0.0529	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0661	FALSE	164	806	69	479	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF126--BSG	2	0	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	2	0	12	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0132	0.0265	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0397	FALSE	515	4851	409	746	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--URAHP	1	2	RUNX1	21108	chr21:36421139:-	URAHP	45344	chr16:90113504:-	ONLY_REF_SPLICE	NO	66	0	0.04	1	0.0132	0.0265	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,URAHP->chr16:90106169-90114181:-,urate_(hydroxyiso-)_hydrolase,_pseudogene	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0397	TRUE	0	0	0	1	0	TRUE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf43--EZH2	1	1	C1orf43	1793	chr1:154192312:-	EZH2	21626	chr7:148516779:-	ONLY_REF_SPLICE	YES	483	414	0	0	0.0132	0.0132	C1orf43->chr1:154179182-154193104:-,chromosome_1_open_reading_frame_43,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--SRSF1	1	1	CPSF6	11046	chr12:69656342:+	SRSF1	22199	chr17:56082402:-	ONLY_REF_SPLICE	YES	292	1120	0.01	0	0.0132	0.0132	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0264	FALSE	2	7	0	12	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTDSPL2--B2M	1	1	CTDSPL2	1539	chr15:44719970:+	B2M	29463	chr15:45007621:+	ONLY_REF_SPLICE	YES	139	171	0.01	0.01	0.0132	0.0132	CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0264	FALSE	0	0	0	4	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--TUBGCP6	1	1	PROSC	2996	chr8:37623873:+	TUBGCP6	26031	chr22:50658444:-	ONLY_REF_SPLICE	YES	174	57	0.01	0.03	0.0132	0.0132	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0264	FALSE	2	2	1	4	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--URAHP	1	1	RUNX1	21108	chr21:36421139:-	URAHP	46484	chr16:90111031:-	ONLY_REF_SPLICE	YES	66	1	0.03	0.67	0.0132	0.0132	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,URAHP->chr16:90106169-90114181:-,urate_(hydroxyiso-)_hydrolase,_pseudogene	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.67	0.0264	TRUE	0	0	0	1	0	FALSE	ACH-000960
REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSBP1--MGAM	1	1	SSBP1	9443	chr7:141450184:+	MGAM	20665	chr7:141705329:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0132	0.0132	SSBP1->chr7:141438121-141487722:+,single_stranded_DNA_binding_protein_1,MGAM->chr7:141607613-141806547:+,maltase-glucoamylase	REH_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0264	TRUE	0	1	0	7	1	TRUE	ACH-000960
COLO792_SKIN	TIMM23B--LINC00843	89	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7781	0.1749	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COLO792_SKIN	1	1	0.953	TRUE	508	994	45	981	0	FALSE	ACH-000968
COLO792_SKIN	MT-TA--MT-TN	86	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7519	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO792_SKIN	1	1	0.7519	FALSE	369	2501	205	193	0	FALSE	ACH-000968
COLO792_SKIN	C5orf45--PSAP	75	0	C5orf45	15316	chr5:179263770:-	PSAP	32390	chr10:73576781:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6557	0	C5orf45->chr5:179261436-179289173:-,chromosome_5_open_reading_frame_45,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin	COLO792_SKIN	1	1	0.6557	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	MT-ND6--MT-TE	60	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5246	0.0175	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO792_SKIN	1	1	0.5421	FALSE	499	1288	110	792	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	23	133	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	4383	1	0.03	0.99	0.2011	1.1628	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.03	0.99	1.3639	FALSE	344	827	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	6	187	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	18	1	0.91	0.99	0.0525	1.635	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.91	0.99	1.6875	FALSE	344	826	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	5	187	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	18	0	0.91	1	0.0437	1.635	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.91	1	1.6787	FALSE	344	826	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	4	185	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	32	3	0.86	0.98	0.035	1.6175	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.86	0.98	1.6525	FALSE	344	826	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	3	188	MT-ND4	1263	chrM:11022:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	27	1	0.88	0.99	0.0262	1.6437	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.88	0.99	1.6699	FALSE	344	827	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	3	185	MT-ND4	1216	chrM:10975:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	NO	19	1	0.91	0.99	0.0262	1.6175	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.91	0.99	1.6437	FALSE	344	826	44	306	0	FALSE	ACH-000968
COLO792_SKIN	TIMM23--RP11-464F9.1	46	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	260	4	0.16	0.93	0.4022	0.035	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	COLO792_SKIN	0.16	0.93	0.4372	TRUE	519	3926	326	965	0	FALSE	ACH-000968
COLO792_SKIN	MT-TA--MT-TC	39	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.341	0.0175	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO792_SKIN	1	1	0.3585	FALSE	462	80	0	856	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	5	129	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	42	1	0.76	0.99	0.0437	1.1279	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.76	0.99	1.1716	FALSE	344	827	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	4	128	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	13	1	0.91	0.99	0.035	1.1191	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.91	0.99	1.1541	FALSE	344	821	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND6--MT-TE	29	19	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.2535	0.1661	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO792_SKIN	0.89	1	0.4196	FALSE	499	1288	110	792	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	9	98	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	40	1	0.73	0.99	0.0787	0.8568	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.73	0.99	0.9355	FALSE	344	826	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	5	98	MT-ND4	1144	chrM:10903:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	27	1	0.79	0.99	0.0437	0.8568	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.79	0.99	0.9005	FALSE	344	826	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	3	99	MT-ND4	2134	chrM:11893:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	8483	1	0.01	0.99	0.0262	0.8656	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.01	0.99	0.8918	FALSE	315	784	43	302	0	FALSE	ACH-000968
COLO792_SKIN	ATP6V0C--MT-CO2	27	0	ATP6V0C	2886	chr16:2569357:+	MT-CO2	6967	chrM:7804:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2361	0	ATP6V0C->ATPase_H+_transporting_V0_subunit_c,chr16:2563871-2570219:+,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	COLO792_SKIN	1	1	0.2361	FALSE	0	0	0	9	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND6--MT-TE	26	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2273	0.0262	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO792_SKIN	1	1	0.2535	FALSE	499	1288	110	792	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	3	94	MT-CO3	1556	chrM:9762:+	MT-ATP6	4735	chrM:8477:+	INCL_NON_REF_SPLICE	YES	7	0	0.93	1	0.0262	0.8218	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.93	1	0.848	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	13	49	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	9951	0	0.01	1	0.1137	0.4284	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.01	1	0.5421	FALSE	328	800	43	304	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	7	69	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	14	0	0.84	1	0.0612	0.6033	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.84	1	0.6645	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	12	46	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	15	11	0.79	0.84	0.1049	0.4022	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.79	0.84	0.5071	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	10	47	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	2	28	0.97	0.67	0.0874	0.4109	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.67	0.97	0.4983	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	IL17RC--TTLL3	19	10	IL17RC	2536	chr3:9960293:+	TTLL3	23348	chr3:9862230:+	ONLY_REF_SPLICE	YES	169	8	0.15	0.78	0.1661	0.0874	LOCAL_REARRANGEMENT:+:[61936],IL17RC->chr3:9958758-9975314:+,interleukin_17_receptor_C,TTLL3->Oncogene{Bushman},chr3:9849770-9896822:+,tubulin_tyrosine_ligase_like_3	COLO792_SKIN	0.15	0.78	0.2535	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	CTSD--PSAP	21	0	CTSD	7580	chr11:1776199:-	PSAP	24714	chr10:73576604:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1836	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.05%,CTSD->cathepsin_D,chr11:1773982-1785222:-,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin	COLO792_SKIN	1	1	0.1836	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	MT-TA--MT-TN	8	52	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0.4546	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO792_SKIN	1	1	0.5245	FALSE	369	2501	205	193	0	FALSE	ACH-000968
COLO792_SKIN	FTH1--ACTG1	20	2	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	4794	1	0	0.96	0.1749	0.0175	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	COLO792_SKIN	0	0.96	0.1924	TRUE	0	0	0	64	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	9	42	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	2	17	0.96	0.75	0.0787	0.3672	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.75	0.96	0.4459	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-TA--MT-TN	9	39	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0787	0.341	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO792_SKIN	1	1	0.4197	FALSE	369	2501	205	193	0	FALSE	ACH-000968
COLO792_SKIN	MT-TA--MT-TN	13	21	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1137	0.1836	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO792_SKIN	1	1	0.2973	FALSE	369	2501	205	193	0	FALSE	ACH-000968
COLO792_SKIN	RP11-444D3.1--SOX5	17	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	9	1	0.7	0.1486	0.035	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	COLO792_SKIN	0.7	1	0.1836	TRUE	477	1352	189	275	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	5	48	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	381	0	0.12	1	0.0437	0.4197	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.12	1	0.4634	FALSE	344	827	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	4	50	MT-CO3	1113	chrM:9319:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	4	1	0.93	0.98	0.035	0.4372	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.93	0.98	0.4722	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	10	26	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	18	0	0.67	1	0.0874	0.2273	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.67	1	0.3147	FALSE	344	826	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	4	50	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	4	1	0.93	0.98	0.035	0.4372	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.93	0.98	0.4722	FALSE	344	821	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	4	49	MT-CO3	1205	chrM:9411:+	MT-ATP6	5179	chrM:8921:+	INCL_NON_REF_SPLICE	YES	22	72	0.71	0.42	0.035	0.4284	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.42	0.71	0.4634	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	6	40	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	3	3	0.94	0.94	0.0525	0.3497	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.94	0.94	0.4022	FALSE	344	821	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	8	32	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	19	0	0.68	1	0.0699	0.2798	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.68	1	0.3497	FALSE	344	826	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	4	47	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	22	12	0.7	0.81	0.035	0.4109	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.7	0.81	0.4459	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-TA--MT-TN	8	31	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0.271	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO792_SKIN	1	1	0.3409	FALSE	369	2501	205	193	0	FALSE	ACH-000968
COLO792_SKIN	FTH1--ACTG1	15	2	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	4910	1	0	0.94	0.1311	0.0175	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	COLO792_SKIN	0	0.94	0.1486	TRUE	0	0	0	64	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	3	49	MT-CO3	1220	chrM:9426:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	14	11	0.79	0.83	0.0262	0.4284	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.79	0.83	0.4546	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND1--MT-RNR2	3	48	MT-ND1	1264	chrM:3570:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	46	0	0.53	1	0.0262	0.4197	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO792_SKIN	0.53	1	0.4459	FALSE	114	26	4	85	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	7	31	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	40	0	0.49	1	0.0612	0.271	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.49	1	0.3322	FALSE	344	826	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	3	46	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	13	67	0.79	0.42	0.0262	0.4022	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.42	0.79	0.4284	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	3	46	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	40	0	0.55	1	0.0262	0.4022	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.55	1	0.4284	FALSE	344	826	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	6	32	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	449	0	0.08	1	0.0525	0.2798	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.08	1	0.3323	FALSE	344	827	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	6	32	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	19	0	0.67	1	0.0525	0.2798	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.67	1	0.3323	FALSE	344	826	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	3	42	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	2	11	0.96	0.8	0.0262	0.3672	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.8	0.96	0.3934	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-TA--MT-TN	13	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1137	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO792_SKIN	1	1	0.1137	FALSE	369	2501	205	193	0	FALSE	ACH-000968
COLO792_SKIN	REV3L--RPL28	13	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1137	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	COLO792_SKIN	1	1	0.1137	TRUE	22	156	2	142	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	4	32	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	34	0	0.51	1	0.035	0.2798	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.51	1	0.3148	FALSE	344	827	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND6--MT-TE	9	12	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0787	0.1049	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO792_SKIN	1	1	0.1836	FALSE	499	1288	110	792	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	9	11	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	13	2	0.61	0.91	0.0787	0.0962	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.61	0.91	0.1749	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	RP11-123O10.4--GRIP1	11	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0962	0.0087	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO792_SKIN	1	1	0.1049	FALSE	416	2512	207	587	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	5	24	MT-CO3	1020	chrM:9226:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	0	17	1	0.63	0.0437	0.2098	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.63	1	0.2535	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND6--MT-TE	5	24	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	6	0	0.83	1	0.0437	0.2098	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO792_SKIN	0.83	1	0.2535	FALSE	499	1288	110	792	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	3	31	MT-CO3	1039	chrM:9245:+	MT-ATP6	5321	chrM:9063:+	INCL_NON_REF_SPLICE	YES	0	11	1	0.76	0.0262	0.271	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.76	1	0.2972	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND1--MT-RNR2	9	6	MT-ND1	1323	chrM:3629:+	MT-RNR2	5800	chrM:2514:+	INCL_NON_REF_SPLICE	YES	67	2698	0.18	0.01	0.0787	0.0525	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO792_SKIN	0.01	0.18	0.1312	FALSE	120	26	5	87	0	FALSE	ACH-000968
COLO792_SKIN	SLC7A5--MT-ND1	10	2	SLC7A5	13719	chr16:87864490:-	MT-ND1	17596	chrM:3322:+	INCL_NON_REF_SPLICE	YES	2435	0	0	1	0.0874	0.0175	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	COLO792_SKIN	0	1	0.1049	FALSE	0	0	0	11	0	FALSE	ACH-000968
COLO792_SKIN	MT-TA--MT-TC	10	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0874	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO792_SKIN	1	1	0.0874	FALSE	462	80	0	856	0	FALSE	ACH-000968
COLO792_SKIN	MT-TA--MT-TN	10	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0874	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO792_SKIN	1	1	0.0874	FALSE	369	2501	205	193	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND1--MT-RNR2	8	7	MT-ND1	1297	chrM:3603:+	MT-RNR2	5502	chrM:2216:+	INCL_NON_REF_SPLICE	YES	75	8399	0.17	0	0.0699	0.0612	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO792_SKIN	0	0.17	0.1311	FALSE	120	26	5	87	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	3	25	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	10	1	0.74	0.97	0.0262	0.2186	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.74	0.97	0.2448	FALSE	344	821	44	306	0	FALSE	ACH-000968
COLO792_SKIN	PMEL--MT-CO3	8	5	PMEL	8323	chr12:56351362:-	MT-CO3	14834	chrM:9244:+	INCL_NON_REF_SPLICE	YES	10854	0	0	1	0.0699	0.0437	PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	COLO792_SKIN	0	1	0.1136	FALSE	0	0	0	2	0	FALSE	ACH-000968
COLO792_SKIN	MBP--MT-ND4	9	0	MBP	21723	chr18:74701983:-	MT-ND4	36390	chrM:11226:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0787	0	MBP->chr18:74690783-74845639:-,myelin_basic_protein,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	COLO792_SKIN	1	1	0.0787	FALSE	41	0	0	3	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	6	12	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	20	0	0.47	1	0.0525	0.1049	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.47	1	0.1574	FALSE	344	826	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND6--MT-TE	3	24	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.84	1	0.0262	0.2098	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO792_SKIN	0.84	1	0.236	FALSE	499	1288	110	792	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	6	10	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	3	2	0.84	0.89	0.0525	0.0874	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.84	0.89	0.1399	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-TA--MT-TC	8	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0.0175	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO792_SKIN	1	1	0.0874	FALSE	462	80	0	856	0	FALSE	ACH-000968
COLO792_SKIN	HLA-A--MT-ND1	8	1	HLA-A	2742	chr6:29910778:+	MT-ND1	8756	chrM:3437:+	INCL_NON_REF_SPLICE	YES	1894	3490	0	0	0.0699	0.0087	HLA-A->chr6:29909037-29913661:+,major_histocompatibility_complex,_class_I,_A,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	COLO792_SKIN	0	0	0.0786	FALSE	1	0	0	11	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND6--MT-TE	3	21	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.0262	0.1836	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO792_SKIN	0.89	1	0.2098	FALSE	499	1288	110	792	0	FALSE	ACH-000968
COLO792_SKIN	PMEL--MT-CO3	7	5	PMEL	8329	chr12:56351356:-	MT-CO3	14839	chrM:9249:+	INCL_NON_REF_SPLICE	YES	10627	1	0	0.92	0.0612	0.0437	PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	COLO792_SKIN	0	0.92	0.1049	FALSE	0	0	0	2	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND6--MT-TE	3	20	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	116	0	0.17	1	0.0262	0.1749	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO792_SKIN	0.17	1	0.2011	FALSE	499	1288	110	792	0	FALSE	ACH-000968
COLO792_SKIN	MT-TA--MT-TN	5	12	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0437	0.1049	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO792_SKIN	1	1	0.1486	FALSE	369	2501	205	193	0	FALSE	ACH-000968
COLO792_SKIN	SCARB1--UBC	7	4	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	599	66	0.02	0.14	0.0612	0.035	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	COLO792_SKIN	0.02	0.14	0.0962	TRUE	55	66	6	101	0	FALSE	ACH-000968
COLO792_SKIN	UNK--ITGB4	8	0	UNK	1385	chr17:73781065:+	ITGB4	26812	chr17:73725346:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0699	0	LOCAL_REARRANGEMENT:+:[26782],UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	COLO792_SKIN	1	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	7	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.9	0.0612	0.0175	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.9	1	0.0787	FALSE	344	821	44	306	0	FALSE	ACH-000968
COLO792_SKIN	RIC8B--RFX4	6	6	RIC8B	8866	chr12:107219598:+	RFX4	37585	chr12:107075771:+	ONLY_REF_SPLICE	YES	20	0	0.38	1	0.0525	0.0525	LOCAL_REARRANGEMENT:+:[11792],RIC8B->RIC8_guanine_nucleotide_exchange_factor_B,chr12:107168373-107283090:+,RFX4->chr12:106976685-107156581:+,regulatory_factor_X4	COLO792_SKIN	0.38	1	0.105	TRUE	0	1	0	1	1	TRUE	ACH-000968
COLO792_SKIN	RP11-96H19.1--RP11-446N19.1	7	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0612	0.0175	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO792_SKIN	0.9	1	0.0787	FALSE	515	4851	409	746	0	FALSE	ACH-000968
COLO792_SKIN	GSN--FTH1	7	1	GSN	21058	chr9:124073006:+	FTH1	40116	chr11:61732869:-	INCL_NON_REF_SPLICE	YES	3184	11238	0	0	0.0612	0.0087	GSN->Oncogene{Bushman},chr9:123970072-124095121:+,gelsolin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	COLO792_SKIN	0	0	0.0699	FALSE	0	0	0	1	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	7	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	18	1	0.31	0.89	0.0612	0.0087	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.31	0.89	0.0699	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MMP17--NOC4L	7	0	MMP17	1261	chr12:132313198:+	NOC4L	19756	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0612	0	GTEx_FI:{Brain=[count:15=pct:2.3]},MMP17->chr12:132312938-132336328:+,matrix_metallopeptidase_17,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	COLO792_SKIN	1	1	0.0612	TRUE	7	45	0	7	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	6	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	13	2	0.43	0.83	0.0525	0.035	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.43	0.83	0.0875	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	7	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0612	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	1	1	0.0612	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	4	12	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	18	0	0.47	1	0.035	0.1049	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.47	1	0.1399	FALSE	344	826	44	306	0	FALSE	ACH-000968
COLO792_SKIN	FRMD6--SLC5A10	6	2	FRMD6	18545	chr14:52174951:+	SLC5A10	44701	chr17:18916723:+	ONLY_REF_SPLICE	YES	33	0	0.2	1	0.0525	0.0175	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,SLC5A10->chr17:18853658-18925908:+,solute_carrier_family_5_member_10	COLO792_SKIN	0.2	1	0.07	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	MT-ND1--MT-RNR2	6	0	MT-ND1	1009	chrM:3315:+	MT-RNR2	6449	chrM:3163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0525	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO792_SKIN	1	1	0.0525	FALSE	92	22	4	61	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	3	12	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	38	0	0.28	1	0.0262	0.1049	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	0.28	1	0.1311	FALSE	344	827	44	306	0	FALSE	ACH-000968
COLO792_SKIN	CTD-2547E10.2--IGSF6	5	3	CTD-2547E10.2	1617	chr16:21531149:-	IGSF6	33704	chr16:21658813:-	ONLY_REF_SPLICE	YES	29	0	0.22	1	0.0437	0.0262	CTD-2547E10.2->chr16:21458004-21531765:-,IGSF6->chr16:21652609-21663981:-,immunoglobulin_superfamily_member_6	COLO792_SKIN	0.22	1	0.0699	TRUE	0	1	0	1	1	TRUE	ACH-000968
COLO792_SKIN	MT-ND1--MT-RNR2	3	11	MT-ND1	1272	chrM:3578:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	NO	50	0	0.22	1	0.0262	0.0962	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO792_SKIN	0.22	1	0.1224	FALSE	114	26	4	85	0	FALSE	ACH-000968
COLO792_SKIN	CTC-260F20.3--PMEL	5	2	CTC-260F20.3	8926	chr19:19646748:+	PMEL	19522	chr12:56351226:-	INCL_NON_REF_SPLICE	NO	1	11245	0.88	0	0.0437	0.0175	CTC-260F20.3->chr19:19627036-19646885:+,PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein	COLO792_SKIN	0	0.88	0.0612	FALSE	0	0	0	1	0	FALSE	ACH-000968
COLO792_SKIN	IL17RC--TTLL3	3	10	IL17RC	2525	chr3:9960282:+	TTLL3	23348	chr3:9862230:+	ONLY_REF_SPLICE	YES	150	8	0.08	0.62	0.0262	0.0874	LOCAL_REARRANGEMENT:+:[61936],IL17RC->chr3:9958758-9975314:+,interleukin_17_receptor_C,TTLL3->Oncogene{Bushman},chr3:9849770-9896822:+,tubulin_tyrosine_ligase_like_3	COLO792_SKIN	0.08	0.62	0.1136	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	SLC7A5--ACTG1	5	2	SLC7A5	8075	chr16:87871467:-	ACTG1	21185	chr17:79478596:-	INCL_NON_REF_SPLICE	YES	1946	8955	0	0	0.0437	0.0175	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	COLO792_SKIN	0	0	0.0612	FALSE	0	0	0	11	0	FALSE	ACH-000968
COLO792_SKIN	MFSD12--TUBA1B	5	0	MFSD12	5904	chr19:3557280:-	TUBA1B	21966	chr12:49522647:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0437	0	MFSD12->chr19:3538259-3574288:-,major_facilitator_superfamily_domain_containing_12,TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b	COLO792_SKIN	1	1	0.0437	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0437	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO792_SKIN	1	1	0.0437	FALSE	499	1288	110	792	0	FALSE	ACH-000968
COLO792_SKIN	FTH1--ACTG1	4	2	FTH1	1218	chr11:61734915:-	ACTG1	10550	chr17:79479826:-	INCL_NON_REF_SPLICE	YES	4638	1	0	0.86	0.035	0.0175	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	COLO792_SKIN	0	0.86	0.0525	FALSE	0	0	0	64	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND1--MT-RNR2	3	6	MT-ND1	1232	chrM:3538:+	MT-RNR2	4980	chrM:1694:+	INCL_NON_REF_SPLICE	YES	16	0	0.36	1	0.0262	0.0525	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO792_SKIN	0.36	1	0.0787	FALSE	114	26	4	85	0	FALSE	ACH-000968
COLO792_SKIN	MT-TA--MT-TC	4	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0.0175	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO792_SKIN	1	1	0.0525	FALSE	462	80	0	856	0	FALSE	ACH-000968
COLO792_SKIN	PDSS2--ANXA13	4	2	PDSS2	2710	chr6:107655402:-	ANXA13	27808	chr8:124705538:-	ONLY_REF_SPLICE	YES	8	0	0.43	1	0.035	0.0175	PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2,ANXA13->annexin_A13,chr8:124693034-124749647:-	COLO792_SKIN	0.43	1	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	MAFF--MT-CO3	4	0	MAFF	4646	chr22:38610984:+	MT-CO3	9522	chrM:9548:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	MAFF->chr22:38597889-38612518:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_F,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	COLO792_SKIN	1	1	0.035	FALSE	0	0	0	1	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	3	4	MT-CO3	1173	chrM:9379:+	MT-ATP6	5450	chrM:9192:+	INCL_NON_REF_SPLICE	YES	20	2	0.26	0.78	0.0262	0.035	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.26	0.78	0.0612	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	3	4	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	20	2	0.26	0.78	0.0262	0.035	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	0.26	0.78	0.0612	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-TA--MT-TN	4	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO792_SKIN	1	1	0.035	FALSE	369	2501	205	193	0	FALSE	ACH-000968
COLO792_SKIN	MT-TA--MT-TN	4	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO792_SKIN	1	1	0.035	FALSE	369	2501	205	193	0	FALSE	ACH-000968
COLO792_SKIN	VIM--FTH1	4	0	VIM	2124	chr10:17271381:+	FTH1	12402	chr11:61734935:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	COLO792_SKIN	1	1	0.035	TRUE	0	0	0	6	0	TRUE	ACH-000968
COLO792_SKIN	KMT2E--LHFPL3	3	3	KMT2E	2431	chr7:104678646:+	LHFPL3	39671	chr7:104546634:+	ONLY_REF_SPLICE	YES	23	0	0.21	1	0.0262	0.0262	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,LHFPL3->chr7:103969104-104549001:+,lipoma_HMGIC_fusion_partner-like_3	COLO792_SKIN	0.21	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0262	0.0262	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO792_SKIN	0.86	1	0.0524	FALSE	407	2205	196	549	0	FALSE	ACH-000968
COLO792_SKIN	CTC-260F20.3--PMEL	3	2	CTC-260F20.3	2146	chr19:19637030:+	PMEL	19475	chr12:56351273:-	INCL_NON_REF_SPLICE	YES	775	12112	0.01	0	0.0262	0.0175	CTC-260F20.3->chr19:19627036-19646885:+,PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein	COLO792_SKIN	0	0.01	0.0437	FALSE	0	0	0	1	0	FALSE	ACH-000968
COLO792_SKIN	FRMD6--SLC5A10	3	2	FRMD6	18545	chr14:52174951:+	SLC5A10	44653	chr17:18916675:+	ONLY_REF_SPLICE	YES	33	0	0.13	1	0.0262	0.0175	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,SLC5A10->chr17:18853658-18925908:+,solute_carrier_family_5_member_10	COLO792_SKIN	0.13	1	0.0437	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	KMT2E--LHFPL3	3	2	KMT2E	1357	chr7:104654982:+	LHFPL3	39671	chr7:104546634:+	ONLY_REF_SPLICE	YES	17	0	0.23	1	0.0262	0.0175	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,LHFPL3->chr7:103969104-104549001:+,lipoma_HMGIC_fusion_partner-like_3	COLO792_SKIN	0.23	1	0.0437	TRUE	0	3	0	1	3	TRUE	ACH-000968
COLO792_SKIN	MT-TA--MT-TC	3	2	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0262	0.0175	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO792_SKIN	1	1	0.0437	FALSE	462	80	0	856	0	FALSE	ACH-000968
COLO792_SKIN	CTC-260F20.3--PMEL	3	1	CTC-260F20.3	2131	chr19:19637015:+	PMEL	19459	chr12:56351289:-	INCL_NON_REF_SPLICE	YES	635	12055	0.01	0	0.0262	0.0087	CTC-260F20.3->chr19:19627036-19646885:+,PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein	COLO792_SKIN	0	0.01	0.0349	FALSE	0	0	0	1	0	FALSE	ACH-000968
COLO792_SKIN	DYNC2H1--SSU72	3	1	DYNC2H1	22552	chr11:103026230:+	SSU72	97814	chr1:1500296:-	ONLY_REF_SPLICE	YES	0	256	1	0.02	0.0262	0.0087	DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	COLO792_SKIN	0.02	1	0.0349	TRUE	0	0	0	1	0	FALSE	ACH-000968
COLO792_SKIN	RP11-444D3.1--SOX5	2	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	13	1	0.35	0.0175	0.0437	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	COLO792_SKIN	0.35	1	0.0612	TRUE	160	277	29	98	0	FALSE	ACH-000968
COLO792_SKIN	SLC7A5--ACTG1	3	1	SLC7A5	8068	chr16:87871474:-	ACTG1	21178	chr17:79478603:-	INCL_NON_REF_SPLICE	YES	1925	9247	0	0	0.0262	0.0087	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	COLO792_SKIN	0	0	0.0349	FALSE	0	0	0	11	0	FALSE	ACH-000968
COLO792_SKIN	MAEA--CTBP1	3	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	COLO792_SKIN	1	1	0.0262	TRUE	3	14	2	43	0	FALSE	ACH-000968
COLO792_SKIN	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0262	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO792_SKIN	1	1	0.0262	FALSE	189	492	56	216	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	3	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0262	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	1	1	0.0262	FALSE	344	821	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0262	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO792_SKIN	1	1	0.0262	FALSE	344	821	44	306	0	FALSE	ACH-000968
COLO792_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0262	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO792_SKIN	1	1	0.0262	FALSE	499	1288	110	792	0	FALSE	ACH-000968
COLO792_SKIN	RP1-34H18.1--NAV3	3	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	COLO792_SKIN	1	1	0.0262	TRUE	254	575	65	124	0	FALSE	ACH-000968
COLO792_SKIN	ANXA13--PDSS2	2	2	ANXA13	14172	chr8:124696850:-	PDSS2	21449	chr6:107595431:-	ONLY_REF_SPLICE	YES	2	6	0.67	0.4	0.0175	0.0175	ANXA13->annexin_A13,chr8:124693034-124749647:-,PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2	COLO792_SKIN	0.4	0.67	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0.0087	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO792_SKIN	1	1	0.0262	FALSE	93	270	15	244	0	FALSE	ACH-000968
COLO792_SKIN	LAPTM5--SDC3	2	0	LAPTM5	1162	chr1:31230506:-	SDC3	18023	chr1:31351587:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	LAPTM5->Oncogene{Bushman},chr1:31205316-31230667:-,lysosomal_protein_transmembrane_5,SDC3->Oncogene{Bushman},chr1:31342314-31381608:-,syndecan_3	COLO792_SKIN	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	PSMG4--PXDC1	2	0	PSMG4	6934	chr6:3259430:+	PXDC1	26183	chr6:3738382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	PSMG4->chr6:3231637-3303607:+,proteasome_assembly_chaperone_4,PXDC1->PX_domain_containing_1,chr6:3722848-3752260:-	COLO792_SKIN	1	1	0.0175	TRUE	0	1	0	1	0	TRUE	ACH-000968
COLO792_SKIN	STXBP1--PCOLCE	2	0	STXBP1	1176	chr9:130374719:+	PCOLCE	30457	chr7:100201053:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	STXBP1->chr9:130374544-130457460:+,syntaxin_binding_protein_1,PCOLCE->chr7:100199800-100205798:+,procollagen_C-endopeptidase_enhancer	COLO792_SKIN	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	KMT2E--LHFPL3	1	3	KMT2E	2757	chr7:104678972:+	LHFPL3	39671	chr7:104546634:+	ONLY_REF_SPLICE	YES	24	0	0.14	1	0.0087	0.0262	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,LHFPL3->chr7:103969104-104549001:+,lipoma_HMGIC_fusion_partner-like_3	COLO792_SKIN	0.14	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	RIC8B--RFX4	1	2	RIC8B	5581	chr12:107209082:+	RFX4	37585	chr12:107075771:+	ONLY_REF_SPLICE	YES	18	0	0.14	1	0.0087	0.0175	LOCAL_REARRANGEMENT:+:[11792],RIC8B->RIC8_guanine_nucleotide_exchange_factor_B,chr12:107168373-107283090:+,RFX4->chr12:106976685-107156581:+,regulatory_factor_X4	COLO792_SKIN	0.14	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000968
COLO792_SKIN	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0087	0.0175	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO792_SKIN	1	1	0.0262	FALSE	467	2173	244	435	0	FALSE	ACH-000968
COLO792_SKIN	TSPAN4--LRRC56	1	2	TSPAN4	6469	chr11:850367:+	LRRC56	18437	chr11:540674:+	ONLY_REF_SPLICE	YES	1557	3	0	0.5	0.0087	0.0175	TSPAN4->chr11:842808-867116:+,tetraspanin_4,LRRC56->chr11:537527-554916:+,leucine_rich_repeat_containing_56	COLO792_SKIN	0	0.5	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000968
COLO792_SKIN	IL17RC--TTLL3	1	1	IL17RC	2002	chr3:9959759:+	TTLL3	23348	chr3:9862230:+	ONLY_REF_SPLICE	NO	208	8	0.01	0.2	0.0087	0.0087	LOCAL_REARRANGEMENT:+:[61936],IL17RC->chr3:9958758-9975314:+,interleukin_17_receptor_C,TTLL3->Oncogene{Bushman},chr3:9849770-9896822:+,tubulin_tyrosine_ligase_like_3	COLO792_SKIN	0.01	0.2	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000968
COLO792_SKIN	MFI2--LIMD2	1	1	MFI2	19362	chr3:196730772:-	LIMD2	27875	chr17:61776708:-	ONLY_REF_SPLICE	YES	6	327	0.25	0.01	0.0087	0.0087	MFI2->chr3:196715492-196756687:-,LIMD2->LIM_domain_containing_2,chr17:61773262-61778532:-	COLO792_SKIN	0.01	0.25	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000968
COLO792_SKIN	PMEL--SEPT9	1	1	PMEL	4690	chr12:56359720:-	SEPT9	44499	chr17:75478226:+	ONLY_REF_SPLICE	NO	196	535	0.01	0	0.0087	0.0087	PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	COLO792_SKIN	0	0.01	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000968
COLO792_SKIN	UBL3--SLC7A1	1	1	UBL3	2173	chr13:30423649:-	SLC7A1	14036	chr13:30127997:-	ONLY_REF_SPLICE	YES	279	36	0.01	0.05	0.0087	0.0087	UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	COLO792_SKIN	0.01	0.05	0.0174	FALSE	1	5	0	8	1	FALSE	ACH-000968
BHT101_THYROID	AC104389.28--HBE1	472	0	AC104389.28	1084	chr11:5526799:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	3.7712	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	BHT101_THYROID	1	1	3.7712	TRUE	0	16	0	53	13	FALSE	ACH-000191
BHT101_THYROID	COL14A1--RNU4-25P	273	46	COL14A1	18972	chr8:121224792:+	RNU4-25P	61026	chr8:129022690:-	INCL_NON_REF_SPLICE	YES	51	0	0.86	1	2.1812	0.3675	COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1,RNU4-25P->RNA,_U4_small_nuclear_25,_pseudogene,chr8:129022628-129022857:-	BHT101_THYROID	0.86	1	2.5487	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	AC104389.28--HBE1	121	43	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	11	2	0.94	0.99	0.9668	0.3436	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	BHT101_THYROID	0.94	0.99	1.3104	TRUE	0	48	0	65	48	FALSE	ACH-000191
BHT101_THYROID	TIMM23B--LINC00843	111	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.98	0.8869	0.0959	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BHT101_THYROID	0.98	1	0.9828	TRUE	508	994	45	981	0	FALSE	ACH-000191
BHT101_THYROID	TIMM23--RP11-464F9.1	75	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	131	1	0.37	0.99	0.5992	0.008	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BHT101_THYROID	0.37	0.99	0.6072	TRUE	519	3926	326	965	0	FALSE	ACH-000191
BHT101_THYROID	RP11-307P5.1--SASH1	60	15	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	0.4794	0.1198	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	BHT101_THYROID	0.99	1	0.5992	TRUE	0	2	0	37	2	FALSE	ACH-000191
BHT101_THYROID	PCMTD1--KB-1047C11.2	54	32	PCMTD1	1246	chr8:52811490:-	KB-1047C11.2	24291	chr8:96444854:+	ONLY_REF_SPLICE	YES	302	0	0.22	1	0.4314	0.2557	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,KB-1047C11.2->chr8:96216684-96822364:+	BHT101_THYROID	0.22	1	0.6871	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	MT-TA--MT-TC	52	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4155	0.0479	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BHT101_THYROID	1	1	0.4634	FALSE	462	80	0	856	0	FALSE	ACH-000191
BHT101_THYROID	GTF2IRD1--DTX2P1	36	6	GTF2IRD1	14981	chr7:73950605:+	DTX2P1	40241	chr7:76631480:+	ONLY_REF_SPLICE	YES	22	1	0.66	0.98	0.2876	0.0479	GTF2IRD1->GTF2I_repeat_domain_containing_1,chr7:73868120-74016931:+,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	BHT101_THYROID	0.66	0.98	0.3355	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	UBR5--ENPP2	35	3	UBR5	36021	chr8:103291054:-	ENPP2	58641	chr8:120650767:-	ONLY_REF_SPLICE	YES	52	0	0.42	1	0.2796	0.024	UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,ENPP2->Oncogene{Bushman},chr8:120569326-120685693:-,ectonucleotide_pyrophosphatase/phosphodiesterase_2	BHT101_THYROID	0.42	1	0.3036	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	SPIDR--PQLC2	30	8	SPIDR	16312	chr8:48353104:+	PQLC2	42678	chr1:19651127:+	ONLY_REF_SPLICE	YES	262	38	0.13	0.5	0.2397	0.0639	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,PQLC2->PQ_loop_repeat_containing_2,chr1:19638820-19655794:+	BHT101_THYROID	0.13	0.5	0.3036	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	FAM160B2--XPO7	25	18	FAM160B2	1140	chr8:21946809:+	XPO7	20285	chr8:21824368:+	ONLY_REF_SPLICE	YES	23	3	0.65	0.93	0.1997	0.1438	LOCAL_REARRANGEMENT:+:[82574],FAM160B2->chr8:21946670-21962409:+,family_with_sequence_similarity_160_member_B2,XPO7->chr8:21777180-21864096:+,exportin_7	BHT101_THYROID	0.65	0.93	0.3435	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	KANSL1--ARL17B	27	8	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	16	17	0.69	0.67	0.2157	0.0639	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	BHT101_THYROID	0.67	0.69	0.2796	TRUE	181	1564	124	196	0	FALSE	ACH-000191
BHT101_THYROID	MT-ND6--MT-TE	27	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2157	0.016	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BHT101_THYROID	1	1	0.2317	FALSE	499	1288	110	792	0	FALSE	ACH-000191
BHT101_THYROID	AC104389.28--HBE1	15	48	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	11	0	0.85	1	0.1198	0.3835	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	BHT101_THYROID	0.85	1	0.5033	TRUE	0	35	0	55	35	FALSE	ACH-000191
BHT101_THYROID	RP11-319G9.5--WWOX	26	4	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	1	5	0.97	0.86	0.2077	0.032	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	BHT101_THYROID	0.86	0.97	0.2397	FALSE	154	425	28	76	0	FALSE	ACH-000191
BHT101_THYROID	COL14A1--RNU4-25P	24	11	COL14A1	14405	chr8:121216076:+	RNU4-25P	61026	chr8:129022690:-	INCL_NON_REF_SPLICE	YES	114	0	0.23	1	0.1918	0.0879	COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1,RNU4-25P->RNA,_U4_small_nuclear_25,_pseudogene,chr8:129022628-129022857:-	BHT101_THYROID	0.23	1	0.2797	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	AC104389.28--HBE1	26	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2077	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	BHT101_THYROID	1	1	0.2077	TRUE	0	16	0	53	13	FALSE	ACH-000191
BHT101_THYROID	PCMTD1--KB-1047C11.2	21	11	PCMTD1	1246	chr8:52811490:-	KB-1047C11.2	25446	chr8:96622892:+	ONLY_REF_SPLICE	YES	302	4	0.1	0.89	0.1678	0.0879	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,KB-1047C11.2->chr8:96216684-96822364:+	BHT101_THYROID	0.1	0.89	0.2557	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	C15orf57--CBX3	18	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	18	22	0.57	0.52	0.1438	0.0479	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BHT101_THYROID	0.52	0.57	0.1917	TRUE	267	562	48	632	0	FALSE	ACH-000191
BHT101_THYROID	MT-ND6--MT-TE	17	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1358	0.0559	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BHT101_THYROID	1	1	0.1917	FALSE	499	1288	110	792	0	FALSE	ACH-000191
BHT101_THYROID	ENPP2--RP11-556I14.2	18	1	ENPP2	2617	chr8:120650665:-	RP11-556I14.2	41137	chr4:105575078:-	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1438	0.008	ENPP2->Oncogene{Bushman},chr8:120569326-120685693:-,ectonucleotide_pyrophosphatase/phosphodiesterase_2,RP11-556I14.2->chr4:105575031-105887950:-	BHT101_THYROID	0.95	1	0.1518	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	CTD-2008L17.1--RP11-456O19.2	16	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	5	0	0.79	1	0.1278	0.024	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	BHT101_THYROID	0.79	1	0.1518	FALSE	20	187	4	79	0	FALSE	ACH-000191
BHT101_THYROID	RP11-680G10.1--GSE1	15	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	24	1	0.41	0.1198	0.016	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BHT101_THYROID	0.41	1	0.1358	TRUE	465	1949	224	605	0	FALSE	ACH-000191
BHT101_THYROID	CTD-2337A12.1--CAST	15	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	29	1	0.36	0.1198	0.008	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	BHT101_THYROID	0.36	1	0.1278	TRUE	347	1186	183	220	0	FALSE	ACH-000191
BHT101_THYROID	TRPS1--KCNQ3	14	3	TRPS1	13825	chr8:116599228:-	KCNQ3	30535	chr8:133198428:-	ONLY_REF_SPLICE	YES	10	0	0.63	1	0.1119	0.024	TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,KCNQ3->chr8:133133108-133493200:-,potassium_voltage-gated_channel_subfamily_Q_member_3	BHT101_THYROID	0.63	1	0.1359	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	MT-TA--MT-TC	13	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1039	0.0479	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BHT101_THYROID	1	1	0.1518	FALSE	462	80	0	856	0	FALSE	ACH-000191
BHT101_THYROID	CDC42SE2--CTC-349C3.2	13	3	CDC42SE2	5200	chr5:130599859:+	CTC-349C3.2	20500	chr5:134583502:-	ONLY_REF_SPLICE	YES	17	0	0.48	1	0.1039	0.024	CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,CTC-349C3.2->chr5:134571924-134583869:-	BHT101_THYROID	0.48	1	0.1279	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	MT-ND6--MT-TE	12	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0959	0.024	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BHT101_THYROID	1	1	0.1199	FALSE	499	1288	110	792	0	FALSE	ACH-000191
BHT101_THYROID	SPIDR--MRPL13	12	3	SPIDR	16312	chr8:48353104:+	MRPL13	50668	chr8:121393413:-	ONLY_REF_SPLICE	YES	262	0	0.05	1	0.0959	0.024	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	BHT101_THYROID	0.05	1	0.1199	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	ATF7--FAM120B	12	2	ATF7	1137	chr12:54020063:-	FAM120B	34169	chr6:170667314:+	ONLY_REF_SPLICE	YES	3	28	0.82	0.33	0.0959	0.016	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	BHT101_THYROID	0.33	0.82	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	RNF139-AS1--DEPTOR	12	2	RNF139-AS1	1492	chr8:125486326:-	DEPTOR	17731	chr8:121013764:+	ONLY_REF_SPLICE	YES	54	0	0.21	1	0.0959	0.016	RNF139-AS1->RNF139_antisense_RNA_1_(head_to_head),chr8:125474726-125486817:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	BHT101_THYROID	0.21	1	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	MT-ND4--MT-ATP8	11	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7431	33	0	0.27	0.0879	0.008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BHT101_THYROID	0	0.27	0.0959	FALSE	230	198	14	283	0	FALSE	ACH-000191
BHT101_THYROID	HSP90AB1--MT-RNR2	10	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2224	0	0	1	0.0799	0.008	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BHT101_THYROID	0	1	0.0879	FALSE	13	9	0	364	0	FALSE	ACH-000191
BHT101_THYROID	SCARB1--UBC	10	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	477	56	0.02	0.16	0.0799	0.008	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	BHT101_THYROID	0.02	0.16	0.0879	TRUE	55	66	6	101	0	FALSE	ACH-000191
BHT101_THYROID	IPO11--NPSR1-AS1	9	1	IPO11	32813	chr5:61857084:+	NPSR1-AS1	50378	chr7:34768428:-	ONLY_REF_SPLICE	YES	14	0	0.42	1	0.0719	0.008	IPO11->chr5:61699799-61924409:+,importin_11,NPSR1-AS1->NPSR1_antisense_RNA_1,chr7:34386124-34911194:-	BHT101_THYROID	0.42	1	0.0799	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	MT-ND6--MT-TE	5	16	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0.1278	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BHT101_THYROID	1	1	0.1677	FALSE	499	1288	110	792	0	FALSE	ACH-000191
BHT101_THYROID	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BHT101_THYROID	1	1	0.0719	TRUE	0	0	0	434	0	FALSE	ACH-000191
BHT101_THYROID	FAM160B2--XPO7	4	18	FAM160B2	1140	chr8:21946809:+	XPO7	18489	chr8:21821660:+	ONLY_REF_SPLICE	YES	23	4	0.49	0.85	0.032	0.1438	LOCAL_REARRANGEMENT:+:[82574],FAM160B2->chr8:21946670-21962409:+,family_with_sequence_similarity_160_member_B2,XPO7->chr8:21777180-21864096:+,exportin_7	BHT101_THYROID	0.49	0.85	0.1758	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	C15orf61--MAP2K5	6	9	C15orf61	1527	chr15:67813932:+	MAP2K5	34834	chr15:68040907:+	ONLY_REF_SPLICE	YES	16	16	0.48	0.48	0.0479	0.0719	NEIGHBORS[15419],C15orf61->chr15:67813406-67819628:+,chromosome_15_open_reading_frame_61,MAP2K5->Oncogene{Bushman},chr15:67835047-68099461:+,mitogen-activated_protein_kinase_kinase_5	BHT101_THYROID	0.48	0.48	0.1198	FALSE	0	0	0	1	0	FALSE	ACH-000191
BHT101_THYROID	MT-ND4--MT-ATP8	8	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	7561	28	0	0.24	0.0639	0.008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BHT101_THYROID	0	0.24	0.0719	FALSE	230	193	14	283	0	FALSE	ACH-000191
BHT101_THYROID	MT-ND6--MT-TE	5	12	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0.0959	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BHT101_THYROID	1	1	0.1358	FALSE	499	1288	110	792	0	FALSE	ACH-000191
BHT101_THYROID	ENPP2--RP11-556I14.2	7	1	ENPP2	2617	chr8:120650665:-	RP11-556I14.2	40017	chr4:105588173:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0559	0.008	ENPP2->Oncogene{Bushman},chr8:120569326-120685693:-,ectonucleotide_pyrophosphatase/phosphodiesterase_2,RP11-556I14.2->chr4:105575031-105887950:-	BHT101_THYROID	0.89	1	0.0639	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	AP003900.6--AC091969.1	7	0	AP003900.6	1122	chr21:11169841:+	AC091969.1	19017	chr5:152064345:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0559	0	AP003900.6->chr21:11169720-11184046:+,AC091969.1->chr5:151998525-152603103:-	BHT101_THYROID	1	1	0.0559	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0559	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BHT101_THYROID	1	1	0.0559	FALSE	462	80	0	856	0	FALSE	ACH-000191
BHT101_THYROID	VTI1A--RP11-57H14.3	7	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0559	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	BHT101_THYROID	1	1	0.0559	FALSE	272	151	14	158	0	FALSE	ACH-000191
BHT101_THYROID	ATF7--FAM120B	6	2	ATF7	1465	chr12:54019735:-	FAM120B	34169	chr6:170667314:+	ONLY_REF_SPLICE	YES	14	28	0.36	0.22	0.0479	0.016	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	BHT101_THYROID	0.22	0.36	0.0639	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	IPO11--NPSR1-AS1	6	2	IPO11	32813	chr5:61857084:+	NPSR1-AS1	48099	chr7:34800803:-	ONLY_REF_SPLICE	YES	14	0	0.36	1	0.0479	0.016	IPO11->chr5:61699799-61924409:+,importin_11,NPSR1-AS1->NPSR1_antisense_RNA_1,chr7:34386124-34911194:-	BHT101_THYROID	0.36	1	0.0639	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	RP11-680G10.1--GSE1	6	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.57	0.0479	0.016	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BHT101_THYROID	0.57	1	0.0639	TRUE	458	1351	185	561	0	FALSE	ACH-000191
BHT101_THYROID	AP000525.9--LA16c-60G3.6	6	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	18	0	0.28	1	0.0479	0.008	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	BHT101_THYROID	0.28	1	0.0559	TRUE	0	42	0	133	42	FALSE	ACH-000191
BHT101_THYROID	MT-ND4--MT-ATP8	6	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8743	33	0	0.17	0.0479	0.008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BHT101_THYROID	0	0.17	0.0559	FALSE	231	205	14	283	0	FALSE	ACH-000191
BHT101_THYROID	RP11-96H19.1--RP11-446N19.1	6	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0479	0.008	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BHT101_THYROID	0.7	1	0.0559	FALSE	515	4851	409	746	0	FALSE	ACH-000191
BHT101_THYROID	MT-ND4--MT-ATP8	5	3	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	8025	0	0	1	0.0399	0.024	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BHT101_THYROID	0	1	0.0639	FALSE	231	217	16	283	0	FALSE	ACH-000191
BHT101_THYROID	C15orf61--MAP2K5	3	9	C15orf61	1527	chr15:67813932:+	MAP2K5	34496	chr15:68040569:+	ONLY_REF_SPLICE	YES	16	18	0.43	0.4	0.024	0.0719	NEIGHBORS[15419],C15orf61->chr15:67813406-67819628:+,chromosome_15_open_reading_frame_61,MAP2K5->Oncogene{Bushman},chr15:67835047-68099461:+,mitogen-activated_protein_kinase_kinase_5	BHT101_THYROID	0.4	0.43	0.0959	FALSE	0	0	0	1	0	FALSE	ACH-000191
BHT101_THYROID	MT-ND4--MT-ATP8	5	1	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8679	87	0	0.06	0.0399	0.008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BHT101_THYROID	0	0.06	0.0479	FALSE	231	217	16	283	0	FALSE	ACH-000191
BHT101_THYROID	MT-TA--MT-TC	3	8	MT-TA	1063	chrM:5593:-	MT-TC	4102	chrM:5794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0.0639	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BHT101_THYROID	1	1	0.0879	FALSE	462	80	0	856	0	FALSE	ACH-000191
BHT101_THYROID	RP11-155G15.2--RP11-1E3.1	5	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	BHT101_THYROID	1	1	0.0399	FALSE	46	201	11	112	0	FALSE	ACH-000191
BHT101_THYROID	C15orf57--CBX3	4	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	17	22	0.29	0.24	0.032	0.024	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BHT101_THYROID	0.24	0.29	0.056	TRUE	267	562	48	632	0	FALSE	ACH-000191
BHT101_THYROID	MT-ND4--MT-ATP8	4	3	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	8575	0	0	1	0.032	0.024	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BHT101_THYROID	0	1	0.056	FALSE	231	217	16	283	0	FALSE	ACH-000191
BHT101_THYROID	MT-ND6--MT-TE	4	3	MT-ND6	1198	chrM:14476:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.024	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BHT101_THYROID	1	1	0.056	FALSE	499	1288	110	792	0	FALSE	ACH-000191
BHT101_THYROID	IFI35--AARSD1	4	2	IFI35	2461	chr17:41164294:+	AARSD1	7902	chr17:41116254:-	ONLY_REF_SPLICE	YES	79	0	0.07	1	0.032	0.016	LOCAL_INVERSION:+:-:[42227],IFI35->chr17:41158742-41166473:+,interferon_induced_protein_35,AARSD1->alanyl-tRNA_synthetase_domain_containing_1,chr17:41102543-41116515:-	BHT101_THYROID	0.07	1	0.048	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	MT-TA--MT-TC	3	6	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0.0479	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BHT101_THYROID	1	1	0.0719	FALSE	462	80	0	856	0	FALSE	ACH-000191
BHT101_THYROID	MT-ATP6--MT-CO1	4	1	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2658	10259	0	0	0.032	0.008	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BHT101_THYROID	0	0	0.04	FALSE	183	104	9	328	0	FALSE	ACH-000191
BHT101_THYROID	MT-ATP6--MT-CO1	4	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	8510	9067	0	0	0.032	0.008	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BHT101_THYROID	0	0	0.04	FALSE	183	104	9	328	0	FALSE	ACH-000191
BHT101_THYROID	MT-ND4--MT-ATP8	4	1	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10148	87	0	0.05	0.032	0.008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BHT101_THYROID	0	0.05	0.04	FALSE	231	217	16	283	0	FALSE	ACH-000191
BHT101_THYROID	MT-ND4--MT-ATP8	4	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	7584	28	0	0.15	0.032	0.008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BHT101_THYROID	0	0.15	0.04	FALSE	230	198	14	283	0	FALSE	ACH-000191
BHT101_THYROID	MT-ND4--MT-ATP8	4	1	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	10560	11	0	0.31	0.032	0.008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BHT101_THYROID	0	0.31	0.04	FALSE	231	216	16	283	0	FALSE	ACH-000191
BHT101_THYROID	AC104389.28--HBE1	4	0	AC104389.28	1084	chr11:5526799:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	BHT101_THYROID	1	1	0.032	TRUE	0	16	0	53	13	FALSE	ACH-000191
BHT101_THYROID	MT-ATP6--MT-CO1	4	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BHT101_THYROID	1	1	0.032	FALSE	183	104	9	328	0	FALSE	ACH-000191
BHT101_THYROID	RP11-254I22.1--CTD-2337A12.1	4	0	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	BHT101_THYROID	1	1	0.032	TRUE	6	15	3	35	0	FALSE	ACH-000191
BHT101_THYROID	TIMP1--MT-ND2	4	0	TIMP1	2185	chrX:47442896:+	MT-ND2	8441	chrM:4832:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	TIMP1->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_1,chrX:47441712-47446188:+,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	BHT101_THYROID	1	1	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000191
BHT101_THYROID	C15orf61--MAP2K5	2	6	C15orf61	1527	chr15:67813932:+	MAP2K5	35867	chr15:68061940:+	ONLY_REF_SPLICE	YES	16	17	0.33	0.32	0.016	0.0479	NEIGHBORS[15419],C15orf61->chr15:67813406-67819628:+,chromosome_15_open_reading_frame_61,MAP2K5->Oncogene{Bushman},chr15:67835047-68099461:+,mitogen-activated_protein_kinase_kinase_5	BHT101_THYROID	0.32	0.33	0.0639	FALSE	0	0	0	1	0	FALSE	ACH-000191
BHT101_THYROID	MT-ND4--MT-ATP8	3	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	9636	0	0	1	0.024	0.016	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BHT101_THYROID	0	1	0.04	FALSE	231	217	16	283	0	FALSE	ACH-000191
BHT101_THYROID	MT-ND4--MT-ATP8	3	2	MT-ND4	1566	chrM:11325:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	10140	11	0	0.31	0.024	0.016	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BHT101_THYROID	0	0.31	0.04	FALSE	231	217	16	283	0	FALSE	ACH-000191
BHT101_THYROID	HM13--DEFB124	3	1	HM13	1307	chr20:30102537:+	DEFB124	23284	chr20:30060841:-	ONLY_REF_SPLICE	YES	538	0	0.01	1	0.024	0.008	LOCAL_INVERSION:+:-:[37671],HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13,DEFB124->chr20:30053309-30064560:-,defensin_beta_124	BHT101_THYROID	0.01	1	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000191
BHT101_THYROID	MT-ND4--MT-ATP8	3	1	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	10775	0	0	1	0.024	0.008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BHT101_THYROID	0	1	0.032	FALSE	231	217	16	283	0	FALSE	ACH-000191
BHT101_THYROID	SLC7A5--RPL39	3	1	SLC7A5	8058	chr16:87871484:-	RPL39	17596	chrX:118925591:-	INCL_NON_REF_SPLICE	YES	667	0	0.01	1	0.024	0.008	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	BHT101_THYROID	0.01	1	0.032	FALSE	0	0	0	5	0	FALSE	ACH-000191
BHT101_THYROID	AC104389.28--HBE1	3	0	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	BHT101_THYROID	1	1	0.024	TRUE	0	11	0	26	8	FALSE	ACH-000191
BHT101_THYROID	AC104389.28--HBE1	3	0	AC104389.28	1302	chr11:5526581:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	BHT101_THYROID	1	1	0.024	TRUE	0	16	0	53	13	FALSE	ACH-000191
BHT101_THYROID	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	BHT101_THYROID	1	1	0.024	TRUE	0	5	0	18	5	TRUE	ACH-000191
BHT101_THYROID	CTD-2008L17.1--RP11-456O19.2	3	0	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	BHT101_THYROID	1	1	0.024	FALSE	33	240	4	98	0	FALSE	ACH-000191
BHT101_THYROID	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BHT101_THYROID	1	1	0.024	FALSE	183	104	9	328	0	FALSE	ACH-000191
BHT101_THYROID	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BHT101_THYROID	1	1	0.024	FALSE	183	104	9	328	0	FALSE	ACH-000191
BHT101_THYROID	MT-ND4--MT-ATP8	3	0	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BHT101_THYROID	1	1	0.024	FALSE	231	217	16	283	0	FALSE	ACH-000191
BHT101_THYROID	NME1-NME2--MT-ND1	3	0	NME1-NME2	7295	chr17:49243859:+	MT-ND1	15072	chrM:3310:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	NME1-NME2->NME1-NME2_readthrough,chr17:49230920-49249108:+,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	BHT101_THYROID	1	1	0.024	FALSE	0	0	0	2	0	FALSE	ACH-000191
BHT101_THYROID	RP11-307P5.1--SASH1	2	4	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	22	1	0.21	0.86	0.016	0.032	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	BHT101_THYROID	0.21	0.86	0.048	TRUE	0	0	0	16	0	TRUE	ACH-000191
BHT101_THYROID	VTI1A--RP11-57H14.3	3	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	BHT101_THYROID	1	1	0.024	FALSE	28	14	1	23	0	FALSE	ACH-000191
BHT101_THYROID	PTDSS1--STMN2	2	2	PTDSS1	5279	chr8:97299374:+	STMN2	23654	chr8:80549037:+	ONLY_REF_SPLICE	YES	133	0	0.03	1	0.016	0.016	PTDSS1->chr8:97273943-97349223:+,phosphatidylserine_synthase_1,STMN2->chr8:80523049-80578410:+,stathmin_2	BHT101_THYROID	0.03	1	0.032	TRUE	0	0	0	1	0	FALSE	ACH-000191
BHT101_THYROID	RP11-307P5.1--SASH1	1	6	RP11-307P5.1	4371	chr6:148054947:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	NO	81	1	0.08	0.88	0.008	0.0479	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	BHT101_THYROID	0.08	0.88	0.0559	TRUE	0	0	0	11	0	TRUE	ACH-000191
BHT101_THYROID	ATF7--FAM120B	2	1	ATF7	1137	chr12:54020063:-	FAM120B	35262	chr6:170697375:+	ONLY_REF_SPLICE	YES	3	27	0.5	0.1	0.016	0.008	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	BHT101_THYROID	0.1	0.5	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	3	1	0.5	0.016	0.008	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	BHT101_THYROID	0.5	1	0.024	FALSE	16	356	14	466	0	FALSE	ACH-000191
BHT101_THYROID	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.016	0.008	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BHT101_THYROID	0.5	1	0.024	FALSE	407	2205	196	549	0	FALSE	ACH-000191
BHT101_THYROID	MTAP--DMRTA1	2	0	MTAP	8659	chr9:21838009:+	DMRTA1	25056	chr9:22451063:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	BHT101_THYROID	1	1	0.016	TRUE	0	1	0	1	1	TRUE	ACH-000191
BHT101_THYROID	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BHT101_THYROID	1	1	0.016	FALSE	292	1546	117	613	0	FALSE	ACH-000191
BHT101_THYROID	CLIC1--RPL7	1	3	CLIC1	4985	chr6:31701613:-	RPL7	14663	chr8:74203896:-	ONLY_REF_SPLICE	NO	2021	6948	0	0	0.008	0.024	CLIC1->chloride_intracellular_channel_1,chr6:31698358-31707540:-,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	BHT101_THYROID	0	0	0.032	FALSE	0	0	0	12	0	FALSE	ACH-000191
BHT101_THYROID	AC104389.28--HBE1	1	2	AC104389.28	2337	chr11:5368106:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	NO	23	0	0.12	1	0.008	0.016	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	BHT101_THYROID	0.12	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000191
BHT101_THYROID	SPIDR--PQLC2	1	2	SPIDR	13881	chr8:48320523:+	PQLC2	42678	chr1:19651127:+	ONLY_REF_SPLICE	NO	255	38	0.01	0.07	0.008	0.016	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,PQLC2->PQ_loop_repeat_containing_2,chr1:19638820-19655794:+	BHT101_THYROID	0.01	0.07	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000191
BHT101_THYROID	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	50	65	0.04	0.03	0.008	0.008	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	BHT101_THYROID	0.03	0.04	0.016	FALSE	118	557	29	88	0	FALSE	ACH-000191
BHT101_THYROID	PVT1--MYC	1	1	PVT1	1202	chr8:128806980:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	NO	552	741	0	0	0.008	0.008	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	BHT101_THYROID	0	0	0.016	FALSE	3	14	0	24	0	FALSE	ACH-000191
BHT101_THYROID	PVT1--MYC	1	1	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	NO	552	771	0	0	0.008	0.008	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	BHT101_THYROID	0	0	0.016	FALSE	3	14	0	24	0	FALSE	ACH-000191
BHT101_THYROID	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.008	0.008	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BHT101_THYROID	1	1	0.016	FALSE	467	2173	244	435	0	FALSE	ACH-000191
BHT101_THYROID	TRIM14--ZC3H14	1	1	TRIM14	1231	chr9:100881264:-	ZC3H14	23804	chr14:89041037:+	ONLY_REF_SPLICE	YES	150	56	0.01	0.03	0.008	0.008	TRIM14->chr9:100831557-100881494:-,tripartite_motif_containing_14,ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14	BHT101_THYROID	0.01	0.03	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000191
BHT101_THYROID	UBR5--RP11-556I14.2	1	1	UBR5	35811	chr8:103291264:-	RP11-556I14.2	62180	chr4:105575078:-	ONLY_REF_SPLICE	YES	67	0	0.03	1	0.008	0.008	UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,RP11-556I14.2->chr4:105575031-105887950:-	BHT101_THYROID	0.03	1	0.016	TRUE	0	0	0	1	0	FALSE	ACH-000191
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	114	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	1.4722	0.0387	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.5109	FALSE	499	1288	110	792	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	52	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.6715	0.0517	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.7232	FALSE	499	1288	110	792	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OR51S1--TP53I11	42	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5424	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5424	TRUE	402	216	10	229	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	37	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4778	0.0258	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5036	FALSE	462	80	0	856	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	16	34	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2066	0.4391	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6457	FALSE	369	2501	205	193	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	19	20	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.2454	0.2583	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.5037	FALSE	499	1288	110	792	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	24	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3099	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3099	FALSE	369	2501	205	193	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	23	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.297	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.297	TRUE	0	0	0	518	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	20	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2583	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2583	FALSE	499	1288	110	792	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	18	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2325	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2325	TRUE	46	1352	75	139	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--PARGP1	15	5	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1937	0.0646	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2583	TRUE	393	2105	140	19	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	25	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1033	0.3229	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4262	FALSE	499	1288	110	792	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	33	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0775	0.4262	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.5037	FALSE	499	1288	110	792	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	32	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0775	0.4133	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4908	FALSE	369	2501	205	193	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	33	MT-ND6	1153	chrM:14521:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0646	0.4262	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.4908	FALSE	499	1288	110	792	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	9	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	3	1	0.81	0.1162	0.0517	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.1679	FALSE	515	4851	409	746	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	10	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1291	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1291	TRUE	519	3926	326	965	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	15	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0.1937	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2454	FALSE	369	2501	205	193	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TH--MT-ND4	4	5	MT-TH	1017	chrM:12154:+	MT-ND4	5367	chrM:12057:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0.0646	LOCAL_REARRANGEMENT:+:[1],MT-TH->chrM:12138-12206:+,mitochondrially_encoded_tRNA_histidine,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1163	FALSE	2	0	0	2	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	FALSE	462	80	0	856	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	22	156	2	142	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0.0258	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0775	FALSE	462	80	0	856	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0.0258	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0775	FALSE	462	80	0	856	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	FALSE	499	1288	110	792	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	FALSE	499	1288	110	792	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	FALSE	499	1288	110	792	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1002	chrM:14672:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	FALSE	499	1288	110	792	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TFG--GPR128	3	0	TFG	5019	chr3:100438902:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0387	0	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	TRUE	12	123	7	17	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AFF1--KMT2A	2	1	AFF1	8490	chr4:87968746:+	KMT2A	52489	chr11:118355577:+	ONLY_REF_SPLICE	YES	7	2	0.3	0.6	0.0258	0.0129	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.6	0.0387	TRUE	0	0	0	2	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0.0129	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	FALSE	416	2512	207	587	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACN9--SHFM1	2	0	ACN9	2308	chr7:96747209:+	SHFM1	15230	chr7:96324203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ACN9->chr7:96745902-96811075:+,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	3	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASB1--NDUFA10	2	0	ASB1	1378	chr2:239335760:+	NDUFA10	25359	chr2:240946787:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	ASB1->ankyrin_repeat_and_SOCS_box_containing_1,chr2:239335383-239360891:+,NDUFA10->NADH:ubiquinone_oxidoreductase_subunit_A10,chr2:240831867-240964819:-	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-260F20.3--APEX1	2	0	CTC-260F20.3	1106	chr19:19627141:+	APEX1	12451	chr14:20923737:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CTC-260F20.3->chr19:19627036-19646885:+,APEX1->apurinic/apyrimidinic_endodeoxyribonuclease_1,chr14:20923350-20925927:+	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JARID2--DTNBP1	2	0	JARID2	5780	chr6:15410596:+	DTNBP1	34515	chr6:15615630:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=7;pct=0.08%;dist=Lung=1,Brain_-_Hippocampus=1,Artery_-_Coronary=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:+:-:[780],JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,DTNBP1->chr6:15523032-15663289:-,dystrobrevin_binding_protein_1	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAD1L1--EIF3B	2	0	MAD1L1	35008	chr7:1937836:-	EIF3B	59817	chr7:2418769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	2	0	3	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	3	1	0.62	0.0129	0.0517	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.0646	FALSE	467	2173	244	435	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAF4--TIAM1	2	0	SCAF4	1413	chr21:33103976:-	TIAM1	27419	chr21:32711737:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF608--LMNB1	2	0	ZNF608	4819	chr5:124079777:-	LMNB1	28458	chr5:126154614:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608,LMNB1->chr5:126112315-126172712:+,lamin_B1	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	1	2	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	NO	16	278	0.16	0.01	0.0129	0.0258	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.16	0.0387	FALSE	3	48	0	26	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DEGS1--NVL	1	1	DEGS1	2440	chr1:224371120:+	NVL	33819	chr1:224438020:-	ONLY_REF_SPLICE	YES	13	121	0.13	0.02	0.0129	0.0129	GTEx_v2:{count=3;pct=0.03%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:+:-:[33893],DEGS1->chr1:224363458-224381143:+,delta(4)-desaturase,_sphingolipid_1,NVL->chr1:224415036-224518089:-,nuclear_VCP-like	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.13	0.0258	TRUE	1	1	0	3	1	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	1	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33548	chr12:132635803:+	ONLY_REF_SPLICE	YES	16	280	0.11	0.01	0.0129	0.0129	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.11	0.0258	FALSE	3	48	0	26	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	1	1	FBRSL1	19923	chr12:133153517:+	NOC4L	33548	chr12:132635803:+	ONLY_REF_SPLICE	NO	238	280	0.01	0.01	0.0129	0.0129	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0258	FALSE	1	4	0	5	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR2--DHX34	1	1	GLTSCR2	1262	chr19:48249040:+	DHX34	29491	chr19:47885237:+	ONLY_REF_SPLICE	NO	3705	112	0	0.02	0.0129	0.0129	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:2=pct:3.8],Breast=[count:2=pct:1.8],Cervix_Uteri=[count:1=pct:12.5],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=4;pct=0.05%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hippocampus=1,Whole_Blood=1,Spleen=1},GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0258	FALSE	14	43	2	13	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	1	1	KMT2A	17776	chr11:118355029:+	AFF1	62546	chr4:88005275:+	ONLY_REF_SPLICE	YES	2	5	0.5	0.29	0.0129	0.0129	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.5	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	1	1	KMT2A	17776	chr11:118355029:+	AFF1	62543	chr4:88005272:+	ONLY_REF_SPLICE	NO	2	5	0.5	0.29	0.0129	0.0129	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.5	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NMRAL1--PTPN18	1	1	NMRAL1	10973	chr16:4516154:-	PTPN18	27826	chr2:131132239:+	ONLY_REF_SPLICE	YES	415	259	0	0.01	0.0129	0.0129	NMRAL1->NmrA-like_family_domain_containing_1,chr16:4511681-4545764:-,PTPN18->chr2:131113580-131132982:+,protein_tyrosine_phosphatase,_non-receptor_type_18	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000874
RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THOP1--AP3D1	1	1	THOP1	6952	chr19:2799789:+	AP3D1	44967	chr19:2102267:-	ONLY_REF_SPLICE	YES	383	151	0.01	0.01	0.0129	0.0129	THOP1->chr19:2785458-2813599:+,thimet_oligopeptidase_1,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	RS411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000874
JHUEM2_ENDOMETRIUM	TIMM23B--LINC00843	180	46	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.5737	0.6577	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHUEM2_ENDOMETRIUM	1	1	3.2314	TRUE	508	994	45	981	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	TIMM23--RP11-464F9.1	90	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	344	3	0.21	0.97	1.2869	0.0572	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JHUEM2_ENDOMETRIUM	0.21	0.97	1.3441	TRUE	519	3926	326	965	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	ZNF654--HMGB2	50	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7149	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JHUEM2_ENDOMETRIUM	1	1	0.7149	TRUE	0	0	0	518	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP11-680G10.1--GSE1	27	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	4	1	0.9	0.3861	0.1287	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHUEM2_ENDOMETRIUM	0.9	1	0.5148	TRUE	458	1351	185	561	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP11-680G10.1--GSE1	23	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	29	1	0.5	0.3289	0.0858	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHUEM2_ENDOMETRIUM	0.5	1	0.4147	TRUE	465	1949	224	605	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP11-444D3.1--SOX5	20	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.286	0.0715	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	JHUEM2_ENDOMETRIUM	1	1	0.3575	TRUE	477	1352	189	275	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	NPM1P24--SET	21	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3003	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JHUEM2_ENDOMETRIUM	1	1	0.3003	TRUE	0	0	0	434	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	MT-TA--MT-TC	20	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.286	0.0286	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM2_ENDOMETRIUM	1	1	0.3146	FALSE	462	80	0	856	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	OR51S1--TP53I11	17	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2431	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	JHUEM2_ENDOMETRIUM	1	1	0.2431	TRUE	402	216	10	229	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	HSPBP1--ZSWIM6	13	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1859	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	JHUEM2_ENDOMETRIUM	1	1	0.1859	TRUE	47	32	1	28	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP5-857K21.11--MTATP6P1	10	1	RP5-857K21.11	1146	chr1:569901:+	MTATP6P1	5219	chr1:569747:+	INCL_NON_REF_SPLICE	YES	224	1	0.05	0.92	0.143	0.0143	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	JHUEM2_ENDOMETRIUM	0.05	0.92	0.1573	TRUE	16	42	4	10	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP5-857K21.11--MTATP6P1	6	13	RP5-857K21.11	1107	chr1:569862:+	MTATP6P1	5103	chr1:569631:+	INCL_NON_REF_SPLICE	YES	7	9	0.73	0.68	0.0858	0.1859	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	JHUEM2_ENDOMETRIUM	0.68	0.73	0.2717	TRUE	16	42	4	10	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP11-319G9.5--WWOX	8	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	13	1	0.41	0.1144	0.0143	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	JHUEM2_ENDOMETRIUM	0.41	1	0.1287	FALSE	154	425	28	76	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP5-857K21.11--MTATP6P1	5	13	RP5-857K21.11	1090	chr1:569845:+	MTATP6P1	4851	chr1:569379:+	INCL_NON_REF_SPLICE	YES	3	128	0.86	0.12	0.0715	0.1859	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	JHUEM2_ENDOMETRIUM	0.12	0.86	0.2574	TRUE	16	42	4	10	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP5-857K21.11--MTATP6P1	6	5	RP5-857K21.11	1106	chr1:569861:+	MTATP6P1	5190	chr1:569718:+	INCL_NON_REF_SPLICE	YES	4	1	0.73	0.92	0.0858	0.0715	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	JHUEM2_ENDOMETRIUM	0.73	0.92	0.1573	TRUE	16	42	4	10	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	NPM1P24--SET	7	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1001	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JHUEM2_ENDOMETRIUM	1	1	0.1001	TRUE	0	0	0	434	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP5-857K21.11--MTATP6P1	4	12	RP5-857K21.11	1075	chr1:569830:+	MTATP6P1	4996	chr1:569524:+	INCL_NON_REF_SPLICE	YES	1	20	0.94	0.44	0.0572	0.1716	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	JHUEM2_ENDOMETRIUM	0.44	0.94	0.2288	TRUE	16	42	4	10	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP5-857K21.11--MTATP6P1	5	7	RP5-857K21.11	1089	chr1:569844:+	MTATP6P1	5174	chr1:569702:+	INCL_NON_REF_SPLICE	YES	3	1	0.8	0.92	0.0715	0.1001	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	JHUEM2_ENDOMETRIUM	0.8	0.92	0.1716	TRUE	16	42	4	10	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	COL1A2--PTMA	6	2	COL1A2	14602	chr7:94041987:+	PTMA	37657	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	2240	4	0	0.67	0.0858	0.0286	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	JHUEM2_ENDOMETRIUM	0	0.67	0.1144	TRUE	0	0	0	9	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP5-857K21.11--MTATP6P1	3	9	RP5-857K21.11	1045	chr1:569800:+	MTATP6P1	5014	chr1:569542:+	INCL_NON_REF_SPLICE	YES	0	19	1	0.39	0.0429	0.1287	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	JHUEM2_ENDOMETRIUM	0.39	1	0.1716	TRUE	16	42	4	10	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM2_ENDOMETRIUM	1	1	0.0715	FALSE	462	80	0	856	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP5-857K21.11--MTATP6P1	5	0	RP5-857K21.11	1075	chr1:569830:+	MTATP6P1	5225	chr1:569753:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	JHUEM2_ENDOMETRIUM	1	1	0.0715	TRUE	16	42	4	10	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP5-857K21.11--MTATP6P1	4	4	RP5-857K21.11	1138	chr1:569893:+	MTATP6P1	5205	chr1:569733:+	INCL_NON_REF_SPLICE	YES	240	1	0.03	0.89	0.0572	0.0572	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	JHUEM2_ENDOMETRIUM	0.03	0.89	0.1144	TRUE	16	42	4	10	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	SAMD5--SASH1	4	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0572	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	JHUEM2_ENDOMETRIUM	1	1	0.0572	TRUE	53	396	64	110	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	MT-TA--MT-TC	3	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0.0286	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM2_ENDOMETRIUM	1	1	0.0715	FALSE	462	80	0	856	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	88	0.67	0.04	0.0429	0.0143	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHUEM2_ENDOMETRIUM	0.04	0.67	0.0572	FALSE	16	356	14	466	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP11-123O10.4--GRIP1	3	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0429	0.0143	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHUEM2_ENDOMETRIUM	1	1	0.0572	FALSE	416	2512	207	587	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP5-857K21.11--MTATP6P1	3	1	RP5-857K21.11	1182	chr1:569937:+	MTATP6P1	5220	chr1:569748:+	INCL_NON_REF_SPLICE	YES	183	1	0.02	0.8	0.0429	0.0143	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	JHUEM2_ENDOMETRIUM	0.02	0.8	0.0572	TRUE	16	42	4	10	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP5-857K21.11--MTATP6P1	3	0	RP5-857K21.11	1028	chr1:569783:+	MTATP6P1	5197	chr1:569725:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	JHUEM2_ENDOMETRIUM	1	1	0.0429	TRUE	16	42	4	10	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	USP34--PTMS	3	0	USP34	53013	chr2:61454298:-	PTMS	79535	chr12:6879137:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,PTMS->chr12:6874682-6880116:+,parathymosin	JHUEM2_ENDOMETRIUM	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000909
JHUEM2_ENDOMETRIUM	DECR2--ABCC1	2	0	DECR2	3660	chr16:456397:+	ABCC1	12936	chr16:16101673:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	DECR2->2,4-dienoyl-CoA_reductase_2,_peroxisomal,chr16:451826-462487:+,ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+	JHUEM2_ENDOMETRIUM	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000909
JHUEM2_ENDOMETRIUM	LINC00578--GNAS	2	0	LINC00578	1190	chr3:177159898:+	GNAS	26071	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	LINC00578->chr3:177159709-177470093:+,long_intergenic_non-protein_coding_RNA_578,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	JHUEM2_ENDOMETRIUM	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000909
JHUEM2_ENDOMETRIUM	POLE4--ZNF362	2	0	POLE4	2655	chr2:75187273:+	ZNF362	9844	chr1:33736088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,ZNF362->chr1:33722146-33766320:+,zinc_finger_protein_362	JHUEM2_ENDOMETRIUM	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000909
JHUEM2_ENDOMETRIUM	SEC23A--DIABLO	2	0	SEC23A	21302	chr14:39517856:-	DIABLO	37460	chr12:122703322:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	GTEx_v2:{count=3;pct=0.03%;dist=Breast_-_Mammary_Tissue=1,Prostate=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},SEC23A->Sec23_homolog_A,_coat_complex_II_component,chr14:39501123-39578850:-,DIABLO->chr12:122692210-122712081:-,diablo_IAP-binding_mitochondrial_protein	JHUEM2_ENDOMETRIUM	1	1	0.0286	TRUE	1	0	0	1	0	TRUE	ACH-000909
JHUEM2_ENDOMETRIUM	WWOX--RP11-319G9.5	2	0	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	JHUEM2_ENDOMETRIUM	1	1	0.0286	FALSE	33	33	2	19	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	1	0	0.8	1	0.0143	0.0429	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	JHUEM2_ENDOMETRIUM	0.8	1	0.0572	TRUE	16	11	2	20	0	FALSE	ACH-000909
JHUEM2_ENDOMETRIUM	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	162	1	0.01	0.0143	0.0143	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	JHUEM2_ENDOMETRIUM	0.01	1	0.0286	FALSE	0	59	0	125	0	FALSE	ACH-000909
HCC2157_BREAST	DNMT1--KEAP1	390	71	DNMT1	17195	chr19:10273343:-	KEAP1	49935	chr19:10597494:-	ONLY_REF_SPLICE	YES	257	137	0.64	0.77	4.2159	0.7675	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,KEAP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:10596796-10614417:-,kelch_like_ECH_associated_protein_1	HCC2157_BREAST	0.64	0.77	4.9834	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PSMD3--PPP1R1B	253	71	PSMD3	6238	chr17:38146450:+	PPP1R1B	15768	chr17:37783559:+	ONLY_REF_SPLICE	YES	236	28	0.58	0.92	2.735	0.7675	PSMD3->chr17:38137050-38154213:+,proteasome_26S_subunit,_non-ATPase_3,PPP1R1B->Oncogene{Bushman},chr17:37782993-37792879:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1B	HCC2157_BREAST	0.58	0.92	3.5025	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RANBP1--TANGO2	228	101	RANBP1	4212	chr22:20106672:+	TANGO2	26962	chr22:20050861:+	ONLY_REF_SPLICE	YES	340	45	0.49	0.88	2.4647	1.0918	LOCAL_REARRANGEMENT:+:[50012],RANBP1->RAN_binding_protein_1,chr22:20103461-20114878:+,TANGO2->chr22:20004537-20053449:+,transport_and_golgi_organization_2_homolog	HCC2157_BREAST	0.49	0.88	3.5565	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	CDCA4--JAG2	192	32	CDCA4	1150	chr14:105487336:-	JAG2	14802	chr14:105615657:-	ONLY_REF_SPLICE	YES	7	137	0.97	0.62	2.0755	0.3459	CDCA4->cell_division_cycle_associated_4,chr14:105475910-105487485:-,JAG2->Oncogene{Bushman},chr14:105607318-105635161:-,jagged_2	HCC2157_BREAST	0.62	0.97	2.4214	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	SMYD3--ZNF670	147	43	SMYD3	1259	chr1:246670356:-	ZNF670	46503	chr1:247109129:-	ONLY_REF_SPLICE	YES	57	15	0.77	0.93	1.5891	0.4648	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670	HCC2157_BREAST	0.77	0.93	2.0539	TRUE	0	2	0	1	2	TRUE	ACH-000691
HCC2157_BREAST	RP11-730G20.2--CTC-471F3.4	110	30	RP11-730G20.2	1920	chr8:75515560:-	CTC-471F3.4	5028	chr19:40449608:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1891	0.3243	RP11-730G20.2->chr8:75515479-75516479:-,CTC-471F3.4->chr19:40448563-40449634:-	HCC2157_BREAST	1	1	1.5134	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	TIMM23B--LINC00843	104	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1243	0.3351	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC2157_BREAST	1	1	1.4594	TRUE	508	994	45	981	0	FALSE	ACH-000691
HCC2157_BREAST	RBM14--PACS1	82	29	RBM14	8780	chr11:66394135:+	PACS1	20347	chr11:65983590:+	INCL_NON_REF_SPLICE	YES	16	95	0.87	0.54	0.8864	0.3135	Cosmic{samples=2,mutations=2,papers=1},RBM14->RNA_binding_motif_protein_14,chr11:66384053-66394818:+,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	HCC2157_BREAST	0.54	0.87	1.1999	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-TA--MT-TN	87	1	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9405	0.0108	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2157_BREAST	1	1	0.9513	FALSE	369	2501	205	193	0	FALSE	ACH-000691
HCC2157_BREAST	PRRC2B--PPAPDC3	70	66	PRRC2B	9243	chr9:134323191:+	PPAPDC3	44222	chr9:134183310:+	ONLY_REF_SPLICE	YES	205	0	0.4	1	0.7567	0.7135	LOCAL_REARRANGEMENT:+:[84831],PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,PPAPDC3->chr9:134165081-134184649:+	HCC2157_BREAST	0.4	1	1.4702	TRUE	0	0	0	2	0	TRUE	ACH-000691
HCC2157_BREAST	ASCC1--MICU1	77	37	ASCC1	7701	chr10:73963185:-	MICU1	44374	chr10:74135630:-	ONLY_REF_SPLICE	YES	327	167	0.26	0.41	0.8324	0.4	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	HCC2157_BREAST	0.26	0.41	1.2324	TRUE	0	0	0	2	0	TRUE	ACH-000691
HCC2157_BREAST	PSPC1--FAM179A	56	12	PSPC1	7403	chr13:20304379:-	FAM179A	21110	chr2:29217591:+	ONLY_REF_SPLICE	YES	121	0	0.36	1	0.6054	0.1297	PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,FAM179A->chr2:29179477-29284239:+,family_with_sequence_similarity_179_member_A	HCC2157_BREAST	0.36	1	0.7351	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	54	9	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3241	9	0.02	0.88	0.5837	0.0973	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0.02	0.88	0.681	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	55	2	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	12672	1554	0	0.04	0.5946	0.0216	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.04	0.6162	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	NAP1L4--GPBP1	49	16	NAP1L4	21555	chr11:2972489:-	GPBP1	33597	chr5:56526673:+	ONLY_REF_SPLICE	YES	197	272	0.25	0.19	0.5297	0.173	NAP1L4->chr11:2965667-3013607:-,nucleosome_assembly_protein_1_like_4,GPBP1->GC-rich_promoter_binding_protein_1,chr5:56469775-56560506:+	HCC2157_BREAST	0.19	0.25	0.7027	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	TIMM23--RP11-464F9.1	52	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	301	20	0.15	0.73	0.5621	0.0216	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC2157_BREAST	0.15	0.73	0.5837	TRUE	519	3926	326	965	0	FALSE	ACH-000691
HCC2157_BREAST	RAB11FIP3--TUBB3	47	13	RAB11FIP3	4291	chr16:521389:+	TUBB3	30030	chr16:89998979:+	ONLY_REF_SPLICE	YES	83	280	0.42	0.18	0.5081	0.1405	RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+,TUBB3->chr16:89985573-90002500:+,chr16:89987800-90005169:+,tubulin_beta_3_class_III	HCC2157_BREAST	0.18	0.42	0.6486	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PRMT7--SLC7A6	44	11	PRMT7	7513	chr16:68358735:+	SLC7A6	32266	chr16:68308594:+	ONLY_REF_SPLICE	YES	45	39	0.55	0.59	0.4756	0.1189	LOCAL_REARRANGEMENT:+:[9155],PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7,SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6	HCC2157_BREAST	0.55	0.59	0.5945	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	4	164	MT-ND4	1519	chrM:11278:+	MT-ND4L	5394	chrM:10485:+	INCL_NON_REF_SPLICE	YES	784	0	0.18	1	0.0432	1.7729	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	0.18	1	1.8161	FALSE	344	827	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	OR51S1--TP53I11	45	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4865	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HCC2157_BREAST	1	1	0.4865	TRUE	402	216	10	229	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	3	161	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	674	0	0.2	1	0.0324	1.7404	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	0.2	1	1.7728	FALSE	344	827	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	MT-TA--MT-TC	41	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4432	0.0865	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2157_BREAST	1	1	0.5297	FALSE	462	80	0	856	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	15	111	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	5344	0	0.02	1	0.1622	1.1999	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	0.02	1	1.3621	FALSE	344	827	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	37	19	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	8	0	0.88	1	0.4	0.2054	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0.88	1	0.6054	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	13	110	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	8	0	0.94	1	0.1405	1.1891	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	0.94	1	1.3296	FALSE	344	821	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	PRLR--AGXT2	31	36	PRLR	1425	chr5:35230370:-	AGXT2	39269	chr5:35025960:-	ONLY_REF_SPLICE	YES	51	4	0.57	0.94	0.3351	0.3892	NEIGHBORS[663],PRLR->Oncogene{Bushman},chr5:35048861-35230794:-,prolactin_receptor,AGXT2->alanine--glyoxylate_aminotransferase_2,chr5:34998206-35048198:-	HCC2157_BREAST	0.57	0.94	0.7243	FALSE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND6--MT-TE	39	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4216	0.0216	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2157_BREAST	1	1	0.4432	FALSE	499	1288	110	792	0	FALSE	ACH-000691
HCC2157_BREAST	NUDT3--BRPF3	33	8	NUDT3	1411	chr6:34360041:-	BRPF3	19788	chr6:36168074:+	ONLY_REF_SPLICE	YES	214	8	0.16	0.84	0.3567	0.0865	NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3,BRPF3->bromodomain_and_PHD_finger_containing_3,chr6:36164521-36200567:+	HCC2157_BREAST	0.16	0.84	0.4432	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RASA2--ACPL2	31	15	RASA2	20422	chr3:141305594:+	ACPL2	43559	chr3:140997184:+	ONLY_REF_SPLICE	YES	19	20	0.71	0.7	0.3351	0.1622	RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,ACPL2->chr3:140947568-141013748:+	HCC2157_BREAST	0.7	0.71	0.4973	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MEGF6--RP5-1092A11.2	29	11	MEGF6	10304	chr1:3431114:-	RP5-1092A11.2	33955	chr1:3629002:-	ONLY_REF_SPLICE	YES	187	0	0.18	1	0.3135	0.1189	MEGF6->chr1:3406484-3528059:-,multiple_EGF_like_domains_6,RP5-1092A11.2->chr1:3628764-3630862:-	HCC2157_BREAST	0.18	1	0.4324	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RRBP1--OVOL2	26	21	RRBP1	1268	chr20:17662673:-	OVOL2	34096	chr20:18005596:-	ONLY_REF_SPLICE	YES	345	19	0.12	0.71	0.2811	0.227	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},RRBP1->chr20:17594323-17662940:-,ribosome_binding_protein_1,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	HCC2157_BREAST	0.12	0.71	0.5081	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	3	110	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	14	0	0.89	1	0.0324	1.1891	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	0.89	1	1.2215	FALSE	344	826	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	LHFPL2--ARSB	26	15	LHFPL2	7033	chr5:77928087:-	ARSB	36082	chr5:78077797:-	ONLY_REF_SPLICE	YES	19	6	0.68	0.87	0.2811	0.1622	LOCAL_REARRANGEMENT:-:[7188],LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,ARSB->arylsulfatase_B,chr5:78073032-78281910:-	HCC2157_BREAST	0.68	0.87	0.4433	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	AXIN1--LMF1	25	17	AXIN1	6640	chr16:354304:-	LMF1	41695	chr16:904706:-	ONLY_REF_SPLICE	YES	84	38	0.33	0.53	0.2703	0.1838	AXIN1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},axin_1,chr16:337440-402673:-,LMF1->Oncogene{Bushman},chr16:903634-1031318:-,lipase_maturation_factor_1	HCC2157_BREAST	0.33	0.53	0.4541	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-TA--MT-TN	29	1	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3135	0.0108	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2157_BREAST	1	1	0.3243	FALSE	369	2501	205	193	0	FALSE	ACH-000691
HCC2157_BREAST	THRAP3--AGO3	26	11	THRAP3	12719	chr1:36762371:+	AGO3	24115	chr1:36437625:+	ONLY_REF_SPLICE	YES	269	13	0.12	0.74	0.2811	0.1189	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+	HCC2157_BREAST	0.12	0.74	0.4	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	4	95	MT-ND4	1062	chrM:10821:+	MT-ND4L	5516	chrM:10607:+	INCL_NON_REF_SPLICE	YES	6	0	0.94	1	0.0432	1.027	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	0.94	1	1.0702	FALSE	344	821	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	PRLR--AGXT2	15	43	PRLR	1425	chr5:35230370:-	AGXT2	38614	chr5:35026615:-	ONLY_REF_SPLICE	YES	51	0	0.53	1	0.1622	0.4648	NEIGHBORS[663],PRLR->Oncogene{Bushman},chr5:35048861-35230794:-,prolactin_receptor,AGXT2->alanine--glyoxylate_aminotransferase_2,chr5:34998206-35048198:-	HCC2157_BREAST	0.53	1	0.627	FALSE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	3	88	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	20	0	0.82	1	0.0324	0.9513	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	0.82	1	0.9837	FALSE	344	826	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	FRYL--OCIAD2	24	3	FRYL	1245	chr4:48782095:-	OCIAD2	84248	chr4:48906628:-	ONLY_REF_SPLICE	YES	4	147	0.87	0.16	0.2594	0.0324	YOSHIHARA_TCGA_num_samples[LUAD:1|PRAD:1],{Klijn_CCL:Kidney=1},FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,OCIAD2->OCIA_domain_containing_2,chr4:48887036-48908954:-	HCC2157_BREAST	0.16	0.87	0.2918	TRUE	0	2	0	1	1	TRUE	ACH-000691
HCC2157_BREAST	RRBP1--OVOL2	19	23	RRBP1	2345	chr20:17660644:-	OVOL2	34096	chr20:18005596:-	ONLY_REF_SPLICE	YES	344	19	0.11	0.69	0.2054	0.2486	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},RRBP1->chr20:17594323-17662940:-,ribosome_binding_protein_1,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	HCC2157_BREAST	0.11	0.69	0.454	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-TA--MT-TN	18	25	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1946	0.2703	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2157_BREAST	1	1	0.4649	FALSE	369	2501	205	193	0	FALSE	ACH-000691
HCC2157_BREAST	GRHL2--NCALD	21	8	GRHL2	9035	chr8:102589747:+	NCALD	48590	chr8:102705124:-	ONLY_REF_SPLICE	YES	58	8	0.33	0.78	0.227	0.0865	LOCAL_INVERSION:+:-:[16817],GRHL2->chr8:102504660-102681954:+,grainyhead_like_transcription_factor_2,NCALD->chr8:102698771-103137135:-,neurocalcin_delta	HCC2157_BREAST	0.33	0.78	0.3135	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-TA--MT-TN	15	31	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1622	0.3351	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2157_BREAST	1	1	0.4973	FALSE	369	2501	205	193	0	FALSE	ACH-000691
HCC2157_BREAST	PRLR--AGXT2	20	7	PRLR	1425	chr5:35230370:-	AGXT2	43085	chr5:35010254:-	ONLY_REF_SPLICE	YES	51	22	0.35	0.55	0.2162	0.0757	NEIGHBORS[663],PRLR->Oncogene{Bushman},chr5:35048861-35230794:-,prolactin_receptor,AGXT2->alanine--glyoxylate_aminotransferase_2,chr5:34998206-35048198:-	HCC2157_BREAST	0.35	0.55	0.2919	FALSE	0	1	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	RP11-603B24.1--HERC2P3	20	7	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	16	1	0.63	0.2162	0.0757	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	HCC2157_BREAST	0.63	1	0.2919	TRUE	27	10	1	20	0	FALSE	ACH-000691
HCC2157_BREAST	CORO7--VPS13D	17	17	CORO7	7741	chr16:4462357:-	VPS13D	106135	chr1:12516054:+	ONLY_REF_SPLICE	YES	38	54	0.47	0.39	0.1838	0.1838	CORO7->chr16:4404543-4475706:-,coronin_7,VPS13D->chr1:12290124-12572099:+,vacuolar_protein_sorting_13_homolog_D	HCC2157_BREAST	0.39	0.47	0.3676	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	20	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	10155	5	0	0.81	0.2162	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.81	0.227	FALSE	230	193	14	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	20	1	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	6214	3	0	0.88	0.2162	0.0108	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.88	0.227	FALSE	41	30	6	102	0	FALSE	ACH-000691
HCC2157_BREAST	PRLR--AGXT2	15	21	PRLR	1425	chr5:35230370:-	AGXT2	40362	chr5:35014224:-	ONLY_REF_SPLICE	YES	51	12	0.41	0.75	0.1622	0.227	NEIGHBORS[663],PRLR->Oncogene{Bushman},chr5:35048861-35230794:-,prolactin_receptor,AGXT2->alanine--glyoxylate_aminotransferase_2,chr5:34998206-35048198:-	HCC2157_BREAST	0.41	0.75	0.3892	FALSE	0	1	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND6--MT-TE	17	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.1838	0.1189	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2157_BREAST	0.93	1	0.3027	FALSE	499	1288	110	792	0	FALSE	ACH-000691
HCC2157_BREAST	RP11-123O10.4--GRIP1	19	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2054	0.0216	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC2157_BREAST	1	1	0.227	FALSE	416	2512	207	587	0	FALSE	ACH-000691
HCC2157_BREAST	MT-TA--MT-TN	5	57	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0541	0.6162	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2157_BREAST	1	1	0.6703	FALSE	369	2501	205	193	0	FALSE	ACH-000691
HCC2157_BREAST	CORO7--VPS13D	16	10	CORO7	3926	chr16:4466460:-	VPS13D	106135	chr1:12516054:+	ONLY_REF_SPLICE	YES	43	54	0.38	0.33	0.173	0.1081	CORO7->chr16:4404543-4475706:-,coronin_7,VPS13D->chr1:12290124-12572099:+,vacuolar_protein_sorting_13_homolog_D	HCC2157_BREAST	0.33	0.38	0.2811	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	9	32	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	9812	0	0	1	0.0973	0.3459	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	0	1	0.4432	FALSE	328	800	43	304	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	15	7	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6189	85	0	0.21	0.1622	0.0757	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.21	0.2379	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	PRLR--AGXT2	5	46	PRLR	2588	chr5:35195653:-	AGXT2	38614	chr5:35026615:-	ONLY_REF_SPLICE	YES	50	0	0.5	1	0.0541	0.4973	NEIGHBORS[663],PRLR->Oncogene{Bushman},chr5:35048861-35230794:-,prolactin_receptor,AGXT2->alanine--glyoxylate_aminotransferase_2,chr5:34998206-35048198:-	HCC2157_BREAST	0.5	1	0.5514	FALSE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	GNAI2--RBM6	15	4	GNAI2	14880	chr3:50295146:+	RBM6	31078	chr3:50085678:+	ONLY_REF_SPLICE	YES	161	73	0.11	0.21	0.1622	0.0432	GNAI2->G_protein_subunit_alpha_i2,Oncogene{Bushman},chr3:50263724-50296787:+,RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+	HCC2157_BREAST	0.11	0.21	0.2054	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	11	19	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	39	0	0.43	1	0.1189	0.2054	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	0.43	1	0.3243	FALSE	344	826	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	RGS3--SLC31A2	14	4	RGS3	32481	chr9:116344522:+	SLC31A2	50006	chr9:115925029:+	ONLY_REF_SPLICE	YES	35	9	0.34	0.67	0.1513	0.0432	RGS3->Oncogene{Bushman},chr9:116207011-116360018:+,regulator_of_G-protein_signaling_3,SLC31A2->chr9:115913222-115926417:+,solute_carrier_family_31_member_2	HCC2157_BREAST	0.34	0.67	0.1945	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	9	23	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0973	0.2486	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	1	1	0.3459	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-TA--MT-TN	7	30	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0757	0.3243	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2157_BREAST	1	1	0.4	FALSE	369	2501	205	193	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	3	44	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.0324	0.4756	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	0.96	1	0.508	FALSE	344	821	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	PRLR--AGXT2	4	40	PRLR	3036	chr5:35195205:-	AGXT2	39269	chr5:35025960:-	ONLY_REF_SPLICE	YES	50	4	0.47	0.92	0.0432	0.4324	NEIGHBORS[663],PRLR->Oncogene{Bushman},chr5:35048861-35230794:-,prolactin_receptor,AGXT2->alanine--glyoxylate_aminotransferase_2,chr5:34998206-35048198:-	HCC2157_BREAST	0.47	0.92	0.4756	FALSE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	13	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12767	9	0	0.62	0.1405	0.0216	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.62	0.1621	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	TTC39A--NRD1	13	2	TTC39A	25542	chr1:51754511:-	NRD1	38402	chr1:52293541:-	ONLY_REF_SPLICE	YES	104	143	0.13	0.09	0.1405	0.0216	TTC39A->chr1:51752930-51810788:-,tetratricopeptide_repeat_domain_39A,NRD1->chr1:52254863-52344477:-	HCC2157_BREAST	0.09	0.13	0.1621	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	13	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10196	9	0	0.61	0.1405	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.61	0.1513	FALSE	230	198	14	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	10	12	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	8	570	0.73	0.04	0.1081	0.1297	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0.04	0.73	0.2378	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	6	27	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0.2919	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	1	1	0.3568	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	RRBP1--OVOL2	7	23	RRBP1	2349	chr20:17660640:-	OVOL2	34096	chr20:18005596:-	INCL_NON_REF_SPLICE	YES	353	19	0.08	0.61	0.0757	0.2486	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},RRBP1->chr20:17594323-17662940:-,ribosome_binding_protein_1,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	HCC2157_BREAST	0.08	0.61	0.3243	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	ASCC1--MICU1	3	37	ASCC1	7701	chr10:73963185:-	MICU1	43254	chr10:74139341:-	ONLY_REF_SPLICE	YES	327	185	0.11	0.18	0.0324	0.4	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	HCC2157_BREAST	0.11	0.18	0.4324	TRUE	0	0	0	2	0	TRUE	ACH-000691
HCC2157_BREAST	INTS4--GAB2	12	1	INTS4	2281	chr11:77702154:-	GAB2	38278	chr11:77991947:-	ONLY_REF_SPLICE	YES	39	5	0.25	0.72	0.1297	0.0108	Cosmic{samples=2,mutations=2,papers=1},Mitelman{CA_ad=1},INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	HCC2157_BREAST	0.25	0.72	0.1405	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	GMDS--PDE8B	11	4	GMDS	1372	chr6:2245555:-	PDE8B	26404	chr5:76607819:+	ONLY_REF_SPLICE	YES	19	0	0.44	1	0.1189	0.0432	Cosmic{samples=2,mutations=2,papers=1},GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,PDE8B->chr5:76506274-76725632:+,phosphodiesterase_8B	HCC2157_BREAST	0.44	1	0.1621	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	EZH2--PSD3	11	3	EZH2	10164	chr7:148523561:-	PSD3	38833	chr8:18662408:-	ONLY_REF_SPLICE	YES	109	10	0.11	0.58	0.1189	0.0324	EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit,PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3	HCC2157_BREAST	0.11	0.58	0.1513	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PRMT7--SLC7A6	8	14	PRMT7	7513	chr16:68358735:+	SLC7A6	31393	chr16:68307721:+	ONLY_REF_SPLICE	YES	45	37	0.33	0.37	0.0865	0.1513	LOCAL_REARRANGEMENT:+:[9155],PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7,SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6	HCC2157_BREAST	0.33	0.37	0.2378	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	IL6R--ATP8B2	10	5	IL6R	8582	chr1:154420647:+	ATP8B2	22871	chr1:154302872:+	ONLY_REF_SPLICE	YES	20	0	0.43	1	0.1081	0.0541	Cosmic{samples=2,mutations=2,papers=1},LOCAL_REARRANGEMENT:+:[53886],IL6R->chr1:154377669-154441926:+,interleukin_6_receptor,ATP8B2->ATPase_phospholipid_transporting_8B2,chr1:154298029-154323783:+	HCC2157_BREAST	0.43	1	0.1622	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	9	9	MT-ND4	2053	chrM:11812:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11011	85	0	0.17	0.0973	0.0973	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.17	0.1946	FALSE	231	215	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	3	33	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0324	0.3567	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	0.95	1	0.3891	FALSE	344	821	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	MT-TA--MT-TN	5	25	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0541	0.2703	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2157_BREAST	1	1	0.3244	FALSE	369	2501	205	193	0	FALSE	ACH-000691
HCC2157_BREAST	MT-TA--MT-TN	6	21	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0.227	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2157_BREAST	1	1	0.2919	FALSE	369	2501	205	193	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	5	23	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0541	0.2486	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	1	1	0.3027	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	7	15	MT-ND5	2667	chrM:14003:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	1515	0	0.01	1	0.0757	0.1622	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0.01	1	0.2379	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-TA--MT-TC	9	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0973	0.0757	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2157_BREAST	1	1	0.173	FALSE	462	80	0	856	0	FALSE	ACH-000691
HCC2157_BREAST	PRLR--AGXT2	1	39	PRLR	2588	chr5:35195653:-	AGXT2	39269	chr5:35025960:-	ONLY_REF_SPLICE	YES	50	4	0.44	0.91	0.0108	0.4216	NEIGHBORS[663],PRLR->Oncogene{Bushman},chr5:35048861-35230794:-,prolactin_receptor,AGXT2->alanine--glyoxylate_aminotransferase_2,chr5:34998206-35048198:-	HCC2157_BREAST	0.44	0.91	0.4324	FALSE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	RASA2--ACPL2	7	15	RASA2	20425	chr3:141305597:+	ACPL2	43559	chr3:140997184:+	ONLY_REF_SPLICE	YES	21	20	0.51	0.52	0.0757	0.1622	RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,ACPL2->chr3:140947568-141013748:+	HCC2157_BREAST	0.51	0.52	0.2379	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	4	26	MT-ND5	2795	chrM:14131:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0.2811	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	1	1	0.3243	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	KHDRBS1--HLA-C	10	0	KHDRBS1	4802	chr1:32498799:+	HLA-C	19309	chr6:31237305:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1081	0	KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+,HLA-C->chr6:31236526-31239907:-,major_histocompatibility_complex,_class_I,_C	HCC2157_BREAST	1	1	0.1081	FALSE	0	0	0	6	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	5	20	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6985	0	0	1	0.0541	0.2162	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	0	1	0.2703	FALSE	344	827	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	4	24	MT-ND5	2813	chrM:14149:+	MT-ATP8	5870	chrM:8423:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0.2594	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	1	1	0.3026	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	5	19	MT-ND4	1213	chrM:10972:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	38	0	0.39	1	0.0541	0.2054	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	0.39	1	0.2595	FALSE	344	826	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	RNF19B--AK2	9	3	RNF19B	1635	chr1:33429652:-	AK2	18557	chr1:33490168:-	ONLY_REF_SPLICE	YES	28	461	0.3	0.03	0.0973	0.0324	LOCAL_REARRANGEMENT:-:[43299],RNF19B->chr1:33402046-33430286:-,ring_finger_protein_19B,AK2->adenylate_kinase_2,chr1:33473585-33546597:-	HCC2157_BREAST	0.03	0.3	0.1297	TRUE	0	1	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	RP11-96H19.1--RP11-446N19.1	9	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.92	0.92	0.0973	0.0324	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC2157_BREAST	0.92	0.92	0.1297	FALSE	515	4851	409	746	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	5	18	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	32	0	0.42	1	0.0541	0.1946	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0.42	1	0.2487	FALSE	213	207	15	279	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND6--MT-TE	9	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0973	0.0216	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2157_BREAST	1	1	0.1189	FALSE	499	1288	110	792	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	6	13	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	12166	0	0	1	0.0649	0.1405	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.2054	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	9	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12117	9	0	0.53	0.0973	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.53	0.1081	FALSE	231	205	14	283	0	FALSE	ACH-000691
HCC2157_BREAST	ODF2--DNM1	9	1	ODF2	7230	chr9:131231632:+	DNM1	48109	chr9:131015380:+	ONLY_REF_SPLICE	YES	122	10	0.08	0.5	0.0973	0.0108	ODF2->chr9:131217465-131263571:+,outer_dense_fiber_of_sperm_tails_2,DNM1->chr9:130965658-131017527:+,dynamin_1	HCC2157_BREAST	0.08	0.5	0.1081	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RAB11FIP3--TUBB3	6	13	RAB11FIP3	5540	chr16:525098:+	TUBB3	30030	chr16:89998979:+	ONLY_REF_SPLICE	YES	96	280	0.17	0.06	0.0649	0.1405	RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+,TUBB3->chr16:89985573-90002500:+,chr16:89987800-90005169:+,tubulin_beta_3_class_III	HCC2157_BREAST	0.06	0.17	0.2054	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RP11-730G20.2--CTC-471F3.4	3	25	RP11-730G20.2	1926	chr8:75515554:-	CTC-471F3.4	5038	chr19:40449598:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0.2703	RP11-730G20.2->chr8:75515479-75516479:-,CTC-471F3.4->chr19:40448563-40449634:-	HCC2157_BREAST	1	1	0.3027	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	7	8	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11679	85	0	0.15	0.0757	0.0865	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.15	0.1622	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	SNX30--KIAA1958	9	0	SNX30	3623	chr9:115580095:+	KIAA1958	31722	chr9:115380151:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0973	0	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Blood_Vessel=[count:1=pct:0.3],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Small_Intestine_-_Terminal_Ileum=1,Lung=1,Adipose_-_Subcutaneous=1,Testis=1},YOSHIHARA_TCGA_num_samples[BLCA:1|PRAD:1],LOCAL_REARRANGEMENT:+:[81441],SNX30->chr9:115513118-115643951:+,sorting_nexin_family_member_30,KIAA1958->KIAA1958,chr9:115249127-115431677:+	HCC2157_BREAST	1	1	0.0973	TRUE	1	8	0	1	8	TRUE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	3	23	MT-ND5	2796	chrM:14132:+	MT-ATP8	5887	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0.2486	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	1	1	0.281	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	3	23	MT-ND5	2791	chrM:14127:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0.2486	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	1	1	0.281	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	SETD7--NDUFC1	8	3	SETD7	13585	chr4:140468074:-	NDUFC1	35729	chr4:140217114:-	ONLY_REF_SPLICE	YES	17	10	0.39	0.52	0.0865	0.0324	SETD7->SET_domain_containing_lysine_methyltransferase_7,chr4:140417095-140527853:-,NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-	HCC2157_BREAST	0.39	0.52	0.1189	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	4	18	MT-ND5	2644	chrM:13980:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	1970	0	0.01	1	0.0432	0.1946	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0.01	1	0.2378	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND6--MT-TE	4	18	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0432	0.1946	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2157_BREAST	0.92	1	0.2378	FALSE	499	1288	110	792	0	FALSE	ACH-000691
HCC2157_BREAST	NAA40--C11orf84	7	6	NAA40	6510	chr11:63721521:+	C11orf84	14216	chr11:63585277:+	ONLY_REF_SPLICE	YES	48	60	0.21	0.18	0.0757	0.0649	NAA40->N(alpha)-acetyltransferase_40,_NatD_catalytic_subunit,chr11:63706431-63724800:+,C11orf84->chr11:63580860-63595190:+,chromosome_11_open_reading_frame_84	HCC2157_BREAST	0.18	0.21	0.1406	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	5	13	MT-ND5	2167	chrM:13503:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	4713	0	0	1	0.0541	0.1405	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.1946	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-TA--MT-TN	8	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0865	0.0108	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2157_BREAST	1	1	0.0973	FALSE	369	2501	205	193	0	FALSE	ACH-000691
HCC2157_BREAST	STYXL1--AC005077.12	7	5	STYXL1	1193	chr7:75677130:-	AC005077.12	15046	chr7:75738080:-	INCL_NON_REF_SPLICE	YES	17	0	0.41	1	0.0757	0.0541	LOCAL_REARRANGEMENT:-:[42427],STYXL1->chr7:75625656-75677322:-,serine/threonine/tyrosine_interacting-like_1,AC005077.12->chr7:75719749-75738097:-	HCC2157_BREAST	0.41	1	0.1298	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PRLR--AGXT2	2	24	PRLR	3036	chr5:35195205:-	AGXT2	40362	chr5:35014224:-	ONLY_REF_SPLICE	NO	50	12	0.34	0.68	0.0216	0.2594	NEIGHBORS[663],PRLR->Oncogene{Bushman},chr5:35048861-35230794:-,prolactin_receptor,AGXT2->alanine--glyoxylate_aminotransferase_2,chr5:34998206-35048198:-	HCC2157_BREAST	0.34	0.68	0.281	FALSE	0	1	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	LHFPL2--ARSB	4	15	LHFPL2	7033	chr5:77928087:-	ARSB	34901	chr5:78079320:-	INCL_NON_REF_SPLICE	YES	19	5	0.5	0.79	0.0432	0.1622	LOCAL_REARRANGEMENT:-:[7188],LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,ARSB->arylsulfatase_B,chr5:78073032-78281910:-	HCC2157_BREAST	0.5	0.79	0.2054	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	5	11	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2086	85	0.01	0.16	0.0541	0.1189	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0.01	0.16	0.173	FALSE	216	209	16	281	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	3	19	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	24	0	0.48	1	0.0324	0.2054	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	0.48	1	0.2378	FALSE	344	826	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	4	15	MT-ND5	2800	chrM:14136:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	570	1	0.03	0.0432	0.1622	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0.03	1	0.2054	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	4	15	MT-ND5	2667	chrM:14003:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1515	0	0.01	1	0.0432	0.1622	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0.01	1	0.2054	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	RP5-1043L13.1--CDH26	7	3	RP5-1043L13.1	10254	chr20:58713700:+	CDH26	46694	chr20:58581768:+	ONLY_REF_SPLICE	YES	5	1	0.67	0.91	0.0757	0.0324	LOCAL_REARRANGEMENT:+:[53829],RP5-1043L13.1->chr20:58662895-59102516:+,CDH26->cadherin_26,chr20:58533471-58609066:+	HCC2157_BREAST	0.67	0.91	0.1081	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	4	14	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	11566	0	0	1	0.0432	0.1513	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.1945	FALSE	231	215	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	3	18	MT-ND4	2250	chrM:12009:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	2086	0	0.01	1	0.0324	0.1946	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0.01	1	0.227	FALSE	216	209	16	281	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	5	10	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	3849	1	0	0.94	0.0541	0.1081	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.94	0.1622	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	4	13	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	12973	0	0	1	0.0432	0.1405	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.1837	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	6	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13765	0	0	1	0.0649	0.0541	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.119	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	4	12	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	13100	0	0	1	0.0432	0.1297	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.1729	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	3	16	MT-ND4	2170	chrM:11929:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	6333	0	0	1	0.0324	0.173	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.2054	FALSE	231	215	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	4	12	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	12723	0	0	1	0.0432	0.1297	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.1729	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	5	8	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	12661	0	0	1	0.0541	0.0865	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.1406	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	4	12	MT-ND5	2290	chrM:13626:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2590	0	0.01	1	0.0432	0.1297	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0.01	1	0.1729	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	3	16	MT-ND5	2768	chrM:14104:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	NO	0	9	1	0.68	0.0324	0.173	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0.68	1	0.2054	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-TA--MT-TN	7	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0757	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2157_BREAST	1	1	0.0757	FALSE	369	2501	205	193	0	FALSE	ACH-000691
HCC2157_BREAST	ASCC1--MICU1	1	23	ASCC1	5622	chr10:73970490:-	MICU1	44374	chr10:74135630:-	ONLY_REF_SPLICE	YES	443	167	0.05	0.13	0.0108	0.2486	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	HCC2157_BREAST	0.05	0.13	0.2594	TRUE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	3	15	MT-ND4	2055	chrM:11814:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	10850	0	0	1	0.0324	0.1622	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.1946	FALSE	231	215	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	4	11	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	2298	1	0.01	0.94	0.0432	0.1189	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0.01	0.94	0.1621	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	C11orf80--CCS	5	6	C11orf80	7297	chr11:66555740:+	CCS	25037	chr11:66361113:+	ONLY_REF_SPLICE	YES	44	91	0.2	0.11	0.0541	0.0649	C11orf80->chr11:66511922-66610987:+,chromosome_11_open_reading_frame_80,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC2157_BREAST	0.11	0.2	0.119	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	LHFPL2--ARSB	5	6	LHFPL2	4775	chr5:77944322:-	ARSB	36082	chr5:78077797:-	ONLY_REF_SPLICE	YES	12	6	0.48	0.65	0.0541	0.0649	LOCAL_REARRANGEMENT:-:[7188],LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,ARSB->arylsulfatase_B,chr5:78073032-78281910:-	HCC2157_BREAST	0.48	0.65	0.119	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	6	2	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	14371	5	0	0.62	0.0649	0.0216	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.62	0.0865	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	6	2	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14188	85	0	0.09	0.0649	0.0216	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.09	0.0865	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	3	14	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15	85	0.53	0.17	0.0324	0.1513	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0.17	0.53	0.1837	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-TA--MT-TC	4	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0.1081	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2157_BREAST	1	1	0.1513	FALSE	462	80	0	856	0	FALSE	ACH-000691
HCC2157_BREAST	CENPI--TMEM35	5	5	CENPI	13569	chrX:100387445:+	TMEM35	27481	chrX:100349562:+	ONLY_REF_SPLICE	YES	32	0	0.24	1	0.0541	0.0541	LOCAL_REARRANGEMENT:+:[1825],CENPI->centromere_protein_I,chrX:100353178-100418670:+,TMEM35->chrX:100333709-100351353:+,transmembrane_protein_35	HCC2157_BREAST	0.24	1	0.1082	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	4	9	MT-ND4	1754	chrM:11513:+	MT-ATP8	5382	chrM:8369:+	INCL_NON_REF_SPLICE	YES	12433	0	0	1	0.0432	0.0973	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.1405	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	6	1	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	14744	570	0	0.01	0.0649	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.01	0.0757	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND6--MT-TE	3	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0.1405	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2157_BREAST	1	1	0.1729	FALSE	499	1288	110	792	0	FALSE	ACH-000691
HCC2157_BREAST	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	12	1	0.37	0.0649	0.0108	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC2157_BREAST	0.37	1	0.0757	TRUE	458	1351	185	561	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	5	4	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	14298	0	0	1	0.0541	0.0432	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.0973	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	5	4	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	14263	0	0	1	0.0541	0.0432	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.0973	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	4	8	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	12681	0	0	1	0.0432	0.0865	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.1297	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	4	8	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	12433	0	0	1	0.0432	0.0865	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.1297	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	3	12	MT-ND5	2339	chrM:13675:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	2481	0	0.01	1	0.0324	0.1297	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0.01	1	0.1621	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	5	4	MT-ND5	1879	chrM:13215:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	4945	1	0	0.9	0.0541	0.0432	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.9	0.0973	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2157_BREAST	1	1	0.0649	FALSE	499	1288	110	792	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	4	7	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	12510	0	0	1	0.0432	0.0757	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.1189	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	3	11	MT-ND4	1987	chrM:11746:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	12316	1	0	0.93	0.0324	0.1189	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.93	0.1513	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	PPP1R16A--BAI1	5	3	PPP1R16A	1159	chr8:145703510:+	BAI1	30408	chr8:143599499:+	ONLY_REF_SPLICE	YES	52	145	0.13	0.05	0.0541	0.0324	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,BAI1->chr8:143530791-143626370:+	HCC2157_BREAST	0.05	0.13	0.0865	TRUE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	RP4-565E6.1--HYDIN	5	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	3	1	0.73	0.0541	0.0324	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HCC2157_BREAST	0.73	1	0.0865	TRUE	456	1387	91	133	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	3	10	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	80	0	0.14	1	0.0324	0.1081	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	0.14	1	0.1405	FALSE	344	827	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	4	6	MT-ND5	2083	chrM:13419:+	MT-ATP8	5903	chrM:8456:+	INCL_NON_REF_SPLICE	YES	5828	1	0	0.91	0.0432	0.0649	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.91	0.1081	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	PSPC1--FAM179A	2	14	PSPC1	9631	chr13:20279802:-	FAM179A	21110	chr2:29217591:+	ONLY_REF_SPLICE	YES	175	0	0.08	1	0.0216	0.1513	PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,FAM179A->chr2:29179477-29284239:+,family_with_sequence_similarity_179_member_A	HCC2157_BREAST	0.08	1	0.1729	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	ZSWIM8--MT-ND4L	5	2	ZSWIM8	12235	chr10:75557564:+	MT-ND4L	19223	chrM:10470:+	INCL_NON_REF_SPLICE	YES	477	0	0.01	1	0.0541	0.0216	ZSWIM8->chr10:75545340-75561551:+,zinc_finger_SWIM-type_containing_8,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	0.01	1	0.0757	FALSE	0	0	0	3	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	5	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10155	9	0	0.4	0.0541	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.4	0.0649	FALSE	230	193	14	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	5	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10073	9	0	0.4	0.0541	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.4	0.0649	FALSE	230	193	14	283	0	FALSE	ACH-000691
HCC2157_BREAST	NAA40--C11orf84	3	9	NAA40	7622	chr11:63722633:+	C11orf84	14216	chr11:63585277:+	INCL_NON_REF_SPLICE	YES	64	60	0.16	0.17	0.0324	0.0973	NAA40->N(alpha)-acetyltransferase_40,_NatD_catalytic_subunit,chr11:63706431-63724800:+,C11orf84->chr11:63580860-63595190:+,chromosome_11_open_reading_frame_84	HCC2157_BREAST	0.16	0.17	0.1297	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	C11orf80--CCS	4	4	C11orf80	7297	chr11:66555740:+	CCS	26110	chr11:66366587:+	ONLY_REF_SPLICE	YES	44	222	0.15	0.03	0.0432	0.0432	C11orf80->chr11:66511922-66610987:+,chromosome_11_open_reading_frame_80,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC2157_BREAST	0.03	0.15	0.0864	TRUE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	5	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0541	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	1	1	0.0541	FALSE	344	821	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	3	8	MT-ND5	2009	chrM:13345:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	5642	0	0	1	0.0324	0.0865	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.1189	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	GMDS--PDE8B	4	3	GMDS	1372	chr6:2245555:-	PDE8B	26407	chr5:76607822:+	INCL_NON_REF_SPLICE	YES	19	0	0.27	1	0.0432	0.0324	Cosmic{samples=2,mutations=2,papers=1},GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,PDE8B->chr5:76506274-76725632:+,phosphodiesterase_8B	HCC2157_BREAST	0.27	1	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	4	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12123	85	0	0.08	0.0432	0.0324	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.08	0.0756	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	3	7	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	2971	1181	0	0.01	0.0324	0.0757	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.01	0.1081	FALSE	43	37	8	105	0	FALSE	ACH-000691
HCC2157_BREAST	MT-TA--MT-TC	3	7	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0.0757	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2157_BREAST	1	1	0.1081	FALSE	462	80	0	856	0	FALSE	ACH-000691
HCC2157_BREAST	PPP6R2--MOV10L1	4	3	PPP6R2	16436	chr22:50873510:+	MOV10L1	32611	chr22:50546565:+	ONLY_REF_SPLICE	YES	12	0	0.37	1	0.0432	0.0324	PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2,MOV10L1->Mov10_RISC_complex_RNA_helicase_like_1,chr22:50528308-50600119:+	HCC2157_BREAST	0.37	1	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	4	2	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	10181	0	0	1	0.0432	0.0216	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.0648	FALSE	230	197	14	283	0	FALSE	ACH-000691
HCC2157_BREAST	MTMR3--NF2	4	2	MTMR3	22609	chr22:30418686:+	NF2	34190	chr22:30032740:+	ONLY_REF_SPLICE	YES	14	44	0.3	0.12	0.0432	0.0216	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,NF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:29999545-30094587:+,neurofibromin_2_(merlin)	HCC2157_BREAST	0.12	0.3	0.0648	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PRMT7--SLC7A6	1	14	PRMT7	7513	chr16:68358735:+	SLC7A6	31370	chr16:68307698:+	ONLY_REF_SPLICE	NO	45	38	0.25	0.28	0.0108	0.1513	LOCAL_REARRANGEMENT:+:[9155],PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7,SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6	HCC2157_BREAST	0.25	0.28	0.1621	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	C11orf80--CCS	4	1	C11orf80	4815	chr11:66526567:+	CCS	26110	chr11:66366587:+	ONLY_REF_SPLICE	YES	30	222	0.14	0.02	0.0432	0.0108	C11orf80->chr11:66511922-66610987:+,chromosome_11_open_reading_frame_80,CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase	HCC2157_BREAST	0.02	0.14	0.054	TRUE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	EEF2--RPS28	4	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	4114	0	0	1	0.0432	0.0108	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC2157_BREAST	0	1	0.054	FALSE	0	0	0	100	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	4	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	11007	1864	0	0	0.0432	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0	0.054	FALSE	231	204	14	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	3	5	MT-ND4	1500	chrM:11259:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	13771	0	0	1	0.0324	0.0541	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.0865	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	4	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	10264	85	0	0.06	0.0432	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.06	0.054	FALSE	230	198	14	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	3	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	13765	0	0	1	0.0324	0.0541	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.0865	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	4	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13364	85	0	0.06	0.0432	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.06	0.054	FALSE	231	205	14	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	4	1	MT-ND5	1018	chrM:12354:+	MT-ATP8	5913	chrM:8466:+	INCL_NON_REF_SPLICE	YES	272	7	0.02	0.42	0.0432	0.0108	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0.02	0.42	0.054	FALSE	34	25	3	77	0	FALSE	ACH-000691
HCC2157_BREAST	MT-TA--MT-TN	4	1	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0.0108	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2157_BREAST	1	1	0.054	FALSE	369	2501	205	193	0	FALSE	ACH-000691
HCC2157_BREAST	PDZRN3--DCSTAMP	3	5	PDZRN3	12814	chr3:73453299:-	DCSTAMP	26637	chr8:105351861:+	INCL_NON_REF_SPLICE	YES	25	0	0.24	1	0.0324	0.0541	PDZRN3->PDZ_domain_containing_ring_finger_3,chr3:73431584-73674091:-,DCSTAMP->chr8:105351315-105368917:+,dendrocyte_expressed_seven_transmembrane_protein	HCC2157_BREAST	0.24	1	0.0865	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RAB11FIP3--TUBB3	1	13	RAB11FIP3	5487	chr16:525045:+	TUBB3	30030	chr16:89998979:+	ONLY_REF_SPLICE	YES	99	280	0.12	0.05	0.0108	0.1405	RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+,TUBB3->chr16:89985573-90002500:+,chr16:89987800-90005169:+,tubulin_beta_3_class_III	HCC2157_BREAST	0.05	0.12	0.1513	TRUE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	SCARB1--UBC	4	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	132	42	0.04	0.11	0.0432	0.0108	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	HCC2157_BREAST	0.04	0.11	0.054	TRUE	55	66	6	101	0	FALSE	ACH-000691
HCC2157_BREAST	CORO7--VPS13D	1	12	CORO7	6789	chr16:4463309:-	VPS13D	106135	chr1:12516054:+	ONLY_REF_SPLICE	YES	44	54	0.23	0.19	0.0108	0.1297	CORO7->chr16:4404543-4475706:-,coronin_7,VPS13D->chr1:12290124-12572099:+,vacuolar_protein_sorting_13_homolog_D	HCC2157_BREAST	0.19	0.23	0.1405	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	3	4	MT-ND5	1635	chrM:12971:+	MT-ATP8	5887	chrM:8440:+	INCL_NON_REF_SPLICE	YES	4124	0	0	1	0.0324	0.0432	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.0756	FALSE	42	36	7	104	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	3	4	MT-ND5	1569	chrM:12905:+	MT-ATP8	5864	chrM:8417:+	INCL_NON_REF_SPLICE	YES	4474	0	0	1	0.0324	0.0432	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.0756	FALSE	42	36	7	104	0	FALSE	ACH-000691
HCC2157_BREAST	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2157_BREAST	1	1	0.0432	FALSE	462	80	0	856	0	FALSE	ACH-000691
HCC2157_BREAST	MT-TA--MT-TN	4	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2157_BREAST	1	1	0.0432	FALSE	369	2501	205	193	0	FALSE	ACH-000691
HCC2157_BREAST	PDZRN3--DCSTAMP	3	4	PDZRN3	12814	chr3:73453299:-	DCSTAMP	28445	chr8:105360769:+	ONLY_REF_SPLICE	YES	25	1	0.22	0.88	0.0324	0.0432	PDZRN3->PDZ_domain_containing_ring_finger_3,chr3:73431584-73674091:-,DCSTAMP->chr8:105351315-105368917:+,dendrocyte_expressed_seven_transmembrane_protein	HCC2157_BREAST	0.22	0.88	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	TMED4--MYO1G	4	0	TMED4	2195	chr7:44620692:-	MYO1G	14473	chr7:45011824:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	TMED4->chr7:44617493-44621886:-,transmembrane_p24_trafficking_protein_4,MYO1G->chr7:45002261-45018697:-,myosin_IG	HCC2157_BREAST	1	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	EZH2--PSD3	3	3	EZH2	9469	chr7:148524256:-	PSD3	38833	chr8:18662408:-	ONLY_REF_SPLICE	YES	95	10	0.06	0.38	0.0324	0.0324	EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit,PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3	HCC2157_BREAST	0.06	0.38	0.0648	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	3	3	MT-ND4	1566	chrM:11325:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	14402	1	0	0.86	0.0324	0.0324	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.86	0.0648	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	CDCA4--JAG2	3	2	CDCA4	1145	chr14:105487341:-	JAG2	14802	chr14:105615657:-	INCL_NON_REF_SPLICE	YES	1	137	0.83	0.04	0.0324	0.0216	CDCA4->cell_division_cycle_associated_4,chr14:105475910-105487485:-,JAG2->Oncogene{Bushman},chr14:105607318-105635161:-,jagged_2	HCC2157_BREAST	0.04	0.83	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	5952	0	0	1	0.0324	0.0216	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.054	FALSE	230	193	14	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	14845	805	0	0.01	0.0324	0.0216	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.01	0.054	FALSE	231	217	16	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	3	2	MT-ND5	1408	chrM:12744:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	YES	6153	5	0	0.5	0.0324	0.0216	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.5	0.054	FALSE	42	36	7	104	0	FALSE	ACH-000691
HCC2157_BREAST	RP11-603B24.1--HERC2P3	2	6	RP11-603B24.1	1304	chr15:22567225:+	HERC2P3	31465	chr15:20588709:-	ONLY_REF_SPLICE	YES	0	16	1	0.33	0.0216	0.0649	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	HCC2157_BREAST	0.33	1	0.0865	TRUE	5	1	0	3	0	FALSE	ACH-000691
HCC2157_BREAST	SKIV2L2--RP11-506H20.1	3	2	SKIV2L2	17595	chr5:54654526:+	RP11-506H20.1	39450	chr5:54590668:+	ONLY_REF_SPLICE	YES	86	0	0.05	1	0.0324	0.0216	LOCAL_REARRANGEMENT:+:[12559],SKIV2L2->Ski2_like_RNA_helicase_2,chr5:54603588-54721409:+,RP11-506H20.1->chr5:54529762-54591029:+	HCC2157_BREAST	0.05	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	3	1	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	10794	502	0	0.01	0.0324	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.01	0.0432	FALSE	231	204	14	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ATP8	3	1	MT-ND4	1170	chrM:10929:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8527	85	0	0.04	0.0324	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	0.04	0.0432	FALSE	230	193	14	283	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND5--MT-ATP8	3	1	MT-ND5	1197	chrM:12533:+	MT-ATP8	5867	chrM:8420:+	INCL_NON_REF_SPLICE	YES	5242	0	0	1	0.0324	0.0108	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2157_BREAST	0	1	0.0432	FALSE	41	30	6	101	0	FALSE	ACH-000691
HCC2157_BREAST	NOTCH1--SAPCD2	3	1	NOTCH1	2216	chr9:139438476:-	SAPCD2	33490	chr9:139960826:-	ONLY_REF_SPLICE	YES	17	14	0.19	0.22	0.0324	0.0108	NOTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:139388896-139440314:-,notch_1,SAPCD2->chr9:139956581-139965040:-,suppressor_APC_domain_containing_2	HCC2157_BREAST	0.19	0.22	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RAB11FIP3--NME4	3	1	RAB11FIP3	3196	chr16:511497:+	NME4	24898	chr16:448990:+	ONLY_REF_SPLICE	YES	54	264	0.07	0.01	0.0324	0.0108	LOCAL_REARRANGEMENT:+:[15252],RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+,NME4->NME/NM23_nucleoside_diphosphate_kinase_4,chr16:446725-460367:+	HCC2157_BREAST	0.01	0.07	0.0432	FALSE	0	1	0	1	1	FALSE	ACH-000691
HCC2157_BREAST	SETD7--NDUFC1	3	1	SETD7	13585	chr4:140468074:-	NDUFC1	36543	chr4:140216300:-	ONLY_REF_SPLICE	YES	17	57	0.19	0.07	0.0324	0.0108	SETD7->SET_domain_containing_lysine_methyltransferase_7,chr4:140417095-140527853:-,NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-	HCC2157_BREAST	0.07	0.19	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	EIF1--RPS28	3	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC2157_BREAST	1	1	0.0324	TRUE	0	0	0	81	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	1	1	0.0324	FALSE	344	821	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	3	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	1	1	0.0324	FALSE	344	821	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND4--MT-ND4L	3	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2157_BREAST	1	1	0.0324	FALSE	344	821	44	306	0	FALSE	ACH-000691
HCC2157_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2157_BREAST	1	1	0.0324	FALSE	499	1288	110	792	0	FALSE	ACH-000691
HCC2157_BREAST	NPM1P24--SET	3	0	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2157_BREAST	1	1	0.0324	TRUE	0	0	0	434	0	FALSE	ACH-000691
HCC2157_BREAST	RP11-66B24.5--ASB7	3	0	RP11-66B24.5	2271	chr15:101359766:+	ASB7	12826	chr15:101188528:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:+:[64544],RP11-66B24.5->chr15:101256454-101368702:+,ASB7->ankyrin_repeat_and_SOCS_box_containing_7,chr15:101142739-101191910:+	HCC2157_BREAST	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0216	0.0432	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC2157_BREAST	0.86	1	0.0648	FALSE	275	511	55	178	0	FALSE	ACH-000691
HCC2157_BREAST	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0216	0.0432	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC2157_BREAST	0.86	1	0.0648	FALSE	467	2173	244	435	0	FALSE	ACH-000691
HCC2157_BREAST	ST3GAL2--COG4	3	0	ST3GAL2	1289	chr16:70472852:-	COG4	27893	chr16:70534994:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:-:[41331],ST3GAL2->ST3_beta-galactoside_alpha-2,3-sialyltransferase_2,chr16:70413338-70473140:-,COG4->chr16:70514471-70557468:-,component_of_oligomeric_golgi_complex_4	HCC2157_BREAST	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	TYMS--SET	3	0	TYMS	4286	chr18:662320:+	SET	17850	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	TYMS->chr18:657604-673578:+,thymidylate_synthetase,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2157_BREAST	1	1	0.0324	TRUE	0	0	0	3	0	TRUE	ACH-000691
HCC2157_BREAST	ZNF620--PBRM1	3	0	ZNF620	6381	chr3:40558181:+	PBRM1	26098	chr3:52668831:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	ZNF620->chr3:40547483-40560227:+,zinc_finger_protein_620,PBRM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:52579368-52719933:-,polybromo_1	HCC2157_BREAST	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	ASCC1--DNAJB12	2	2	ASCC1	10097	chr10:73956569:-	DNAJB12	26732	chr10:74104885:-	ONLY_REF_SPLICE	YES	431	538	0.01	0.01	0.0216	0.0216	ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,DNAJB12->DnaJ_heat_shock_protein_family_(Hsp40)_member_B12,chr10:74092588-74114988:-	HCC2157_BREAST	0.01	0.01	0.0432	FALSE	0	0	0	2	0	FALSE	ACH-000691
HCC2157_BREAST	MTMR3--NF2	2	2	MTMR3	23395	chr22:30419472:+	NF2	34190	chr22:30032740:+	ONLY_REF_SPLICE	YES	17	44	0.19	0.08	0.0216	0.0216	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,NF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:29999545-30094587:+,neurofibromin_2_(merlin)	HCC2157_BREAST	0.08	0.19	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RBM14--PACS1	2	2	RBM14	7794	chr11:66393149:+	PACS1	20347	chr11:65983590:+	ONLY_REF_SPLICE	YES	138	95	0.03	0.04	0.0216	0.0216	Cosmic{samples=2,mutations=2,papers=1},RBM14->RNA_binding_motif_protein_14,chr11:66384053-66394818:+,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	HCC2157_BREAST	0.03	0.04	0.0432	TRUE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	MEGF6--RP5-1092A11.2	1	5	MEGF6	9452	chr1:3431966:-	RP5-1092A11.2	33955	chr1:3629002:-	ONLY_REF_SPLICE	YES	149	0	0.04	1	0.0108	0.0541	MEGF6->chr1:3406484-3528059:-,multiple_EGF_like_domains_6,RP5-1092A11.2->chr1:3628764-3630862:-	HCC2157_BREAST	0.04	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PDZRN3--DCSTAMP	1	5	PDZRN3	12814	chr3:73453299:-	DCSTAMP	26810	chr8:105352034:+	ONLY_REF_SPLICE	NO	25	1	0.19	0.86	0.0108	0.0541	PDZRN3->PDZ_domain_containing_ring_finger_3,chr3:73431584-73674091:-,DCSTAMP->chr8:105351315-105368917:+,dendrocyte_expressed_seven_transmembrane_protein	HCC2157_BREAST	0.19	0.86	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	34	1	0.08	0.0216	0.0108	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC2157_BREAST	0.08	1	0.0324	TRUE	465	1949	224	605	0	FALSE	ACH-000691
HCC2157_BREAST	SPARC--GLRA1	2	1	SPARC	9593	chr5:151049225:-	GLRA1	30011	chr5:151202524:-	ONLY_REF_SPLICE	YES	2857	0	0	1	0.0216	0.0108	SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,GLRA1->chr5:151202074-151304403:-,glycine_receptor_alpha_1	HCC2157_BREAST	0	1	0.0324	FALSE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	TMEM123--MMP20	2	1	TMEM123	2732	chr11:102323255:-	MMP20	21304	chr11:102477407:-	ONLY_REF_SPLICE	YES	597	0	0.01	1	0.0216	0.0108	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Breast=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,MMP20->chr11:102447566-102496063:-,matrix_metallopeptidase_20	HCC2157_BREAST	0.01	1	0.0324	FALSE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	AC002116.7--UBTF	2	0	AC002116.7	3379	chr19:36510286:+	UBTF	10974	chr17:42295664:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	AC002116.7->chr19:36505410-36536874:+,UBTF->chr17:42282401-42298994:-,upstream_binding_transcription_factor,_RNA_polymerase_I	HCC2157_BREAST	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	AHNAK--C11orf48	2	0	AHNAK	5883	chr11:62302475:-	C11orf48	32882	chr11:62437275:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-,C11orf48->chr11:62430287-62439727:-	HCC2157_BREAST	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	ANXA7--SYNPO2L	2	0	ANXA7	12208	chr10:75138669:-	SYNPO2L	20807	chr10:75414038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ANXA7->annexin_A7,chr10:75134859-75173834:-,SYNPO2L->chr10:75404639-75423561:-,synaptopodin_2_like	HCC2157_BREAST	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	ATP6V1C1--RNF19A	2	0	ATP6V1C1	1163	chr8:104033453:+	RNF19A	28475	chr8:101300495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+,RNF19A->chr8:101269288-101348446:-,ring_finger_protein_19A,_RBR_E3_ubiquitin_protein_ligase	HCC2157_BREAST	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	EPB41L1--RP4-550H1.4	2	0	EPB41L1	5683	chr20:34700402:+	RP4-550H1.4	41494	chr20:34662229:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LOCAL_REARRANGEMENT:+:[6244],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,RP4-550H1.4->chr20:34660363-34673182:+	HCC2157_BREAST	1	1	0.0216	TRUE	0	0	0	2	0	TRUE	ACH-000691
HCC2157_BREAST	PPP1R16A--BAI1	1	4	PPP1R16A	1554	chr8:145703905:+	BAI1	29266	chr8:143592293:+	ONLY_REF_SPLICE	YES	128	13	0.04	0.28	0.0108	0.0432	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,BAI1->chr8:143530791-143626370:+	HCC2157_BREAST	0.04	0.28	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PTPRF--MPL	2	0	PTPRF	7148	chr1:44019612:+	MPL	38469	chr1:43803770:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	HGNC_GENEFAM,PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F,MPL->ArcherDX_panel,FoundationOne_panel,MPL_proto-oncogene,_thrombopoietin_receptor,Oncogene{Bushman},chr1:43803478-43818443:+	HCC2157_BREAST	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PVT1--LINC00536	2	0	PVT1	1202	chr8:128806980:+	LINC00536	33100	chr8:117142505:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	HCC2157_BREAST	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RP11-120J1.1--NFIB	2	0	RP11-120J1.1	1261	chr9:14317344:+	NFIB	16293	chr9:14179779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	NEIGHBORS_OVERLAP:+:-:[40823],RP11-120J1.1->chr9:14317084-14357907:+,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	HCC2157_BREAST	1	1	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	PPP1R16A--BAI1	1	3	PPP1R16A	1159	chr8:145703510:+	BAI1	29266	chr8:143592293:+	ONLY_REF_SPLICE	YES	52	13	0.07	0.24	0.0108	0.0324	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,BAI1->chr8:143530791-143626370:+	HCC2157_BREAST	0.07	0.24	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	PPP1R16A--BAI1	1	3	PPP1R16A	1554	chr8:145703905:+	BAI1	30408	chr8:143599499:+	ONLY_REF_SPLICE	YES	128	145	0.03	0.03	0.0108	0.0324	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,BAI1->chr8:143530791-143626370:+	HCC2157_BREAST	0.03	0.03	0.0432	TRUE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	PPP6R2--MOV10L1	1	3	PPP6R2	15320	chr22:50870758:+	MOV10L1	32611	chr22:50546565:+	ONLY_REF_SPLICE	NO	15	0	0.21	1	0.0108	0.0324	PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2,MOV10L1->Mov10_RISC_complex_RNA_helicase_like_1,chr22:50528308-50600119:+	HCC2157_BREAST	0.21	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	KDELR3--DIP2A	1	2	KDELR3	1263	chr22:38864329:+	DIP2A	44293	chr21:47983771:+	ONLY_REF_SPLICE	YES	66	32	0.04	0.09	0.0108	0.0216	KDELR3->KDEL_endoplasmic_reticulum_protein_retention_receptor_3,chr22:38864067-38879452:+,DIP2A->chr21:47878812-47989926:+,disco_interacting_protein_2_homolog_A	HCC2157_BREAST	0.04	0.09	0.0324	TRUE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	MYLK--ROPN1	1	2	MYLK	4376	chr3:123550395:-	ROPN1	60698	chr3:123700271:-	ONLY_REF_SPLICE	YES	3	3	0.5	0.5	0.0108	0.0216	LOCAL_REARRANGEMENT:-:[84190],MYLK->chr3:123328896-123603178:-,myosin_light_chain_kinase,ROPN1->chr3:123687368-123711025:-,rhophilin_associated_tail_protein_1	HCC2157_BREAST	0.5	0.5	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0108	0.0216	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC2157_BREAST	0.75	1	0.0324	FALSE	93	270	15	244	0	FALSE	ACH-000691
HCC2157_BREAST	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0108	0.0216	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC2157_BREAST	1	1	0.0324	TRUE	62	24	1	171	0	FALSE	ACH-000691
HCC2157_BREAST	INTS4--GAB2	1	1	INTS4	3451	chr11:77698575:-	GAB2	38278	chr11:77991947:-	ONLY_REF_SPLICE	NO	43	5	0.04	0.29	0.0108	0.0108	Cosmic{samples=2,mutations=2,papers=1},Mitelman{CA_ad=1},INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	HCC2157_BREAST	0.04	0.29	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	INTS4--GAB2	1	1	INTS4	2281	chr11:77702154:-	GAB2	37201	chr11:78029265:-	ONLY_REF_SPLICE	NO	39	7	0.05	0.22	0.0108	0.0108	Cosmic{samples=2,mutations=2,papers=1},Mitelman{CA_ad=1},INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	HCC2157_BREAST	0.05	0.22	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	LPIN1--GREB1	1	1	LPIN1	24646	chr2:11932132:+	GREB1	73699	chr2:11758414:+	ONLY_REF_SPLICE	YES	92	1	0.02	0.67	0.0108	0.0108	LOCAL_REARRANGEMENT:+:[34807],LPIN1->chr2:11817721-11967535:+,lipin_1,GREB1->chr2:11674242-11782914:+,growth_regulation_by_estrogen_in_breast_cancer_1	HCC2157_BREAST	0.02	0.67	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	MEGF6--RP5-1092A11.2	1	1	MEGF6	4708	chr1:3496389:-	RP5-1092A11.2	33955	chr1:3629002:-	ONLY_REF_SPLICE	YES	180	0	0.01	1	0.0108	0.0108	MEGF6->chr1:3406484-3528059:-,multiple_EGF_like_domains_6,RP5-1092A11.2->chr1:3628764-3630862:-	HCC2157_BREAST	0.01	1	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	PHRF1--PTDSS2	1	1	PHRF1	2697	chr11:582081:+	PTDSS2	28743	chr11:479085:+	ONLY_REF_SPLICE	YES	45	82	0.04	0.02	0.0108	0.0108	LOCAL_REARRANGEMENT:+:[85093],PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,PTDSS2->chr11:448268-491393:+,phosphatidylserine_synthase_2	HCC2157_BREAST	0.02	0.04	0.0216	TRUE	0	1	0	1	1	FALSE	ACH-000691
HCC2157_BREAST	PHRF1--PTDSS2	1	1	PHRF1	2697	chr11:582081:+	PTDSS2	27660	chr11:473895:+	ONLY_REF_SPLICE	YES	45	54	0.04	0.04	0.0108	0.0108	LOCAL_REARRANGEMENT:+:[85093],PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,PTDSS2->chr11:448268-491393:+,phosphatidylserine_synthase_2	HCC2157_BREAST	0.04	0.04	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	PHRF1--PTDSS2	1	1	PHRF1	2222	chr11:581606:+	PTDSS2	28743	chr11:479085:+	ONLY_REF_SPLICE	NO	71	82	0.03	0.02	0.0108	0.0108	LOCAL_REARRANGEMENT:+:[85093],PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,PTDSS2->chr11:448268-491393:+,phosphatidylserine_synthase_2	HCC2157_BREAST	0.02	0.03	0.0216	TRUE	0	1	0	1	1	FALSE	ACH-000691
HCC2157_BREAST	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	1	4	0.67	0.33	0.0108	0.0108	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC2157_BREAST	0.33	0.67	0.0216	FALSE	0	23	1	67	0	FALSE	ACH-000691
HCC2157_BREAST	SETD7--NDUFC1	1	1	SETD7	11385	chr4:140477252:-	NDUFC1	35729	chr4:140217114:-	ONLY_REF_SPLICE	YES	17	10	0.11	0.17	0.0108	0.0108	SETD7->SET_domain_containing_lysine_methyltransferase_7,chr4:140417095-140527853:-,NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-	HCC2157_BREAST	0.11	0.17	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000691
HCC2157_BREAST	SORBS2--DCTD	1	1	SORBS2	9032	chr4:186696381:-	DCTD	57681	chr4:183836728:-	ONLY_REF_SPLICE	NO	239	42	0.01	0.05	0.0108	0.0108	SORBS2->Oncogene{Bushman},chr4:186506598-186877806:-,sorbin_and_SH3_domain_containing_2,DCTD->chr4:183811213-183839089:-,dCMP_deaminase	HCC2157_BREAST	0.01	0.05	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000691
HCC2157_BREAST	SPARC--GLRA1	1	1	SPARC	9593	chr5:151049225:-	GLRA1	29987	chr5:151202548:-	ONLY_REF_SPLICE	YES	2857	0	0	1	0.0108	0.0108	SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,GLRA1->chr5:151202074-151304403:-,glycine_receptor_alpha_1	HCC2157_BREAST	0	1	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000691
UACC257_SKIN	TIMM23B--LINC00843	61	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8632	0.2123	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	UACC257_SKIN	1	1	1.0755	TRUE	508	994	45	981	0	FALSE	ACH-000579
UACC257_SKIN	MT-TA--MT-TC	39	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5519	0.0425	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UACC257_SKIN	1	1	0.5944	FALSE	462	80	0	856	0	FALSE	ACH-000579
UACC257_SKIN	TIMM23--RP11-464F9.1	34	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	133	2	0.21	0.95	0.4811	0.0142	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	UACC257_SKIN	0.21	0.95	0.4953	TRUE	519	3926	326	965	0	FALSE	ACH-000579
UACC257_SKIN	PLXDC1--TAF13	24	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3396	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	UACC257_SKIN	1	1	0.3396	TRUE	7	10	0	216	0	FALSE	ACH-000579
UACC257_SKIN	NIPA2--POLA1	23	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3255	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	UACC257_SKIN	1	1	0.3255	TRUE	46	1352	75	139	0	FALSE	ACH-000579
UACC257_SKIN	MT-ND6--MT-TE	13	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.184	0.1132	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UACC257_SKIN	1	1	0.2972	FALSE	499	1288	110	792	0	FALSE	ACH-000579
UACC257_SKIN	TMTC2--RP11-328J6.1	14	4	TMTC2	1790	chr12:83081448:+	RP11-328J6.1	25780	chr12:103475315:-	ONLY_REF_SPLICE	YES	15	0	0.55	1	0.1981	0.0566	TMTC2->chr12:83080659-83528649:+,transmembrane_and_tetratricopeptide_repeat_containing_2,RP11-328J6.1->chr12:103474728-103572453:-	UACC257_SKIN	0.55	1	0.2547	TRUE	0	0	0	1	0	TRUE	ACH-000579
UACC257_SKIN	MT-ND6--MT-TE	12	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1698	0.1274	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UACC257_SKIN	1	1	0.2972	FALSE	499	1288	110	792	0	FALSE	ACH-000579
UACC257_SKIN	MT-ND6--MT-TE	13	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.184	0.0425	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UACC257_SKIN	1	1	0.2265	FALSE	499	1288	110	792	0	FALSE	ACH-000579
UACC257_SKIN	MT-TA--MT-TC	12	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1698	0.0566	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UACC257_SKIN	1	1	0.2264	FALSE	462	80	0	856	0	FALSE	ACH-000579
UACC257_SKIN	RP11-141M1.3--STARD13	8	5	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	6	1	0.68	0.1132	0.0708	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	UACC257_SKIN	0.68	1	0.184	FALSE	141	264	50	91	0	FALSE	ACH-000579
UACC257_SKIN	NRIP1--AF127936.7	8	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.1132	0.0283	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	UACC257_SKIN	0.91	1	0.1415	FALSE	292	1546	117	613	0	FALSE	ACH-000579
UACC257_SKIN	RP11-444D3.1--SOX5	7	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	9	1	0.55	0.0991	0.0566	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	UACC257_SKIN	0.55	1	0.1557	TRUE	477	1352	189	275	0	FALSE	ACH-000579
UACC257_SKIN	AP000525.9--LA16c-60G3.6	7	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	5	0	0.62	1	0.0991	0.0142	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	UACC257_SKIN	0.62	1	0.1133	TRUE	0	42	0	133	42	FALSE	ACH-000579
UACC257_SKIN	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0991	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	UACC257_SKIN	1	1	0.0991	TRUE	1	39	0	134	39	FALSE	ACH-000579
UACC257_SKIN	MT-ND6--MT-TE	6	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0849	0.0425	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UACC257_SKIN	1	1	0.1274	FALSE	499	1288	110	792	0	FALSE	ACH-000579
UACC257_SKIN	RP11-319G9.5--WWOX	6	2	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	23	1	0.26	0.0849	0.0283	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	UACC257_SKIN	0.26	1	0.1132	FALSE	154	425	28	76	0	FALSE	ACH-000579
UACC257_SKIN	RP1-34H18.1--NAV3	6	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0849	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	UACC257_SKIN	1	1	0.0849	TRUE	254	575	65	124	0	FALSE	ACH-000579
UACC257_SKIN	FTH1--ACTB	5	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0708	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	UACC257_SKIN	1	1	0.0708	TRUE	1	0	0	97	0	FALSE	ACH-000579
UACC257_SKIN	PMEL--NDUFB1	5	0	PMEL	4690	chr12:56359720:-	NDUFB1	18708	chr14:92583986:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0708	0	PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein,NDUFB1->NADH:ubiquinone_oxidoreductase_subunit_B1,chr14:92582466-92588261:-	UACC257_SKIN	1	1	0.0708	TRUE	0	1	0	1	0	TRUE	ACH-000579
UACC257_SKIN	RP11-120D5.1--MID1	5	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0708	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	UACC257_SKIN	1	1	0.0708	FALSE	16	356	14	466	0	FALSE	ACH-000579
UACC257_SKIN	NRIP1--AF127936.7	4	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0566	0.0425	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	UACC257_SKIN	0.64	1	0.0991	FALSE	125	705	46	456	0	FALSE	ACH-000579
UACC257_SKIN	RP11-141M1.3--STARD13	3	6	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	6	1	0.6	0.0425	0.0849	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	UACC257_SKIN	0.6	1	0.1274	FALSE	49	120	16	70	0	FALSE	ACH-000579
UACC257_SKIN	MT-ND6--MT-TE	4	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0566	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UACC257_SKIN	1	1	0.0566	FALSE	499	1288	110	792	0	FALSE	ACH-000579
UACC257_SKIN	RP11-123O10.4--GRIP1	4	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0566	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	UACC257_SKIN	1	1	0.0566	FALSE	416	2512	207	587	0	FALSE	ACH-000579
UACC257_SKIN	MT-ND6--MT-TE	3	3	MT-ND6	1111	chrM:14563:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0425	0.0425	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UACC257_SKIN	1	1	0.085	FALSE	499	1288	110	792	0	FALSE	ACH-000579
UACC257_SKIN	HNRNPH3--SFPQ	3	1	HNRNPH3	2062	chr10:70091992:+	SFPQ	25096	chr1:35643637:-	ONLY_REF_SPLICE	YES	243	93	0.02	0.04	0.0425	0.0142	HGNC_GENEFAM,HNRNPH3->chr10:70090931-70102948:+,heterogeneous_nuclear_ribonucleoprotein_H3,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	UACC257_SKIN	0.02	0.04	0.0567	TRUE	0	0	0	1	0	FALSE	ACH-000579
UACC257_SKIN	FTH1--ACTB	3	0	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0425	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	UACC257_SKIN	1	1	0.0425	TRUE	1	0	0	97	0	FALSE	ACH-000579
UACC257_SKIN	RP11-444D3.1--SOX5	2	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	9	1	0.36	0.0283	0.0425	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	UACC257_SKIN	0.36	1	0.0708	TRUE	274	363	69	150	0	FALSE	ACH-000579
UACC257_SKIN	PHF3--PTP4A1	2	1	PHF3	3273	chr6:64356700:+	PTP4A1	35093	chr6:64286341:+	ONLY_REF_SPLICE	YES	29	1159	0.09	0	0.0283	0.0142	LOCAL_REARRANGEMENT:+:[52233],PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+,PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1	UACC257_SKIN	0	0.09	0.0425	FALSE	0	0	0	4	0	FALSE	ACH-000579
UACC257_SKIN	RP1-34H18.1--RP11-781A6.1	2	1	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0.0142	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	UACC257_SKIN	1	1	0.0425	TRUE	94	160	11	37	0	FALSE	ACH-000579
UACC257_SKIN	NUDT1--HACE1	2	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	UACC257_SKIN	1	1	0.0283	TRUE	1	20	0	20	17	FALSE	ACH-000579
UACC257_SKIN	RBMS1--PSMD14	2	0	RBMS1	1506	chr2:161349800:-	PSMD14	35581	chr2:162223989:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	UACC257_SKIN	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000579
UACC257_SKIN	C17orf76-AS1--GAS5	1	1	C17orf76-AS1	1593	chr17:16342728:+	GAS5	15518	chr1:173835705:-	ONLY_REF_SPLICE	YES	148	494	0.01	0	0.0142	0.0142	C17orf76-AS1->chr17:16342136-16381992:+,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	UACC257_SKIN	0	0.01	0.0284	FALSE	0	0	0	1	0	FALSE	ACH-000579
OVKATE_OVARY	MT-TA--MT-TN	181	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.3387	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVKATE_OVARY	1	1	2.3387	FALSE	369	2501	205	193	0	FALSE	ACH-000443
OVKATE_OVARY	B4GALT5--RP11-435B5.7	103	62	B4GALT5	3552	chr20:48263502:-	RP11-435B5.7	16222	chr1:143533272:-	ONLY_REF_SPLICE	YES	159	0	0.51	1	1.3308	0.8011	B4GALT5->Oncogene{Bushman},beta-1,4-galactosyltransferase_5,chr20:48249482-48330415:-,RP11-435B5.7->chr1:143527555-143533272:-	OVKATE_OVARY	0.51	1	2.1319	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	TXNIP--OTUD7B	107	30	TXNIP	3057	chr1:145440525:+	OTUD7B	9397	chr1:149949511:-	ONLY_REF_SPLICE	YES	842	62	0.14	0.69	1.3825	0.3876	TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein,OTUD7B->OTU_deubiquitinase_7B,chr1:149909705-149982625:-	OVKATE_OVARY	0.14	0.69	1.7701	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	AFAP1--ABLIM2	79	18	AFAP1	1271	chr4:7941383:-	ABLIM2	34469	chr4:8108364:-	ONLY_REF_SPLICE	YES	81	10	0.54	0.91	1.0207	0.2326	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	OVKATE_OVARY	0.54	0.91	1.2533	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	76	6	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	12844	1584	0.01	0.05	0.982	0.0775	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0.01	0.05	1.0595	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	HADHA--ZNF385B	63	25	HADHA	7852	chr2:26453060:-	ZNF385B	47240	chr2:180311497:-	ONLY_REF_SPLICE	YES	66	4	0.57	0.96	0.814	0.323	{Klijn_CCL:Ovary=1},HADHA->chr2:26413504-26467594:-,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_alpha_subunit,ZNF385B->chr2:180306709-180726232:-,zinc_finger_protein_385B	OVKATE_OVARY	0.57	0.96	1.137	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	ABI1--NEURL	57	19	ABI1	1341	chr10:27149676:-	NEURL	23788	chr10:105330629:+	ONLY_REF_SPLICE	YES	40	0	0.66	1	0.7365	0.2455	ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,NEURL->chr10:105253736-105352309:+	OVKATE_OVARY	0.66	1	0.982	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	TIMM23B--LINC00843	54	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.6977	0.1938	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OVKATE_OVARY	0.99	1	0.8915	TRUE	508	994	45	981	0	FALSE	ACH-000443
OVKATE_OVARY	ZNF341--RP11-582E3.2	49	0	ZNF341	1396	chr20:32319858:+	RP11-582E3.2	23003	chr12:27314324:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6331	0	ZNF341->chr20:32319463-32380075:+,zinc_finger_protein_341,RP11-582E3.2->chr12:27258084-27314326:-	OVKATE_OVARY	1	1	0.6331	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	MT-TA--MT-TC	45	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5814	0.1034	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVKATE_OVARY	1	1	0.6848	FALSE	462	80	0	856	0	FALSE	ACH-000443
OVKATE_OVARY	B4GALT5--RP11-435B5.7	35	32	B4GALT5	3552	chr20:48263502:-	RP11-435B5.7	17426	chr1:143529235:-	ONLY_REF_SPLICE	YES	159	1	0.3	0.99	0.4522	0.4135	B4GALT5->Oncogene{Bushman},beta-1,4-galactosyltransferase_5,chr20:48249482-48330415:-,RP11-435B5.7->chr1:143527555-143533272:-	OVKATE_OVARY	0.3	0.99	0.8657	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	MT-ND6--MT-TE	37	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4781	0.0775	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVKATE_OVARY	1	1	0.5556	FALSE	499	1288	110	792	0	FALSE	ACH-000443
OVKATE_OVARY	TIMM23--RP11-464F9.1	38	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.491	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OVKATE_OVARY	1	1	0.491	TRUE	519	3926	326	965	0	FALSE	ACH-000443
OVKATE_OVARY	B4GALT5--RP11-435B5.7	31	26	B4GALT5	3552	chr20:48263502:-	RP11-435B5.7	18464	chr1:143528126:-	ONLY_REF_SPLICE	YES	159	0	0.26	1	0.4005	0.3359	B4GALT5->Oncogene{Bushman},beta-1,4-galactosyltransferase_5,chr20:48249482-48330415:-,RP11-435B5.7->chr1:143527555-143533272:-	OVKATE_OVARY	0.26	1	0.7364	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	OR51S1--TP53I11	37	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4781	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	OVKATE_OVARY	1	1	0.4781	TRUE	402	216	10	229	0	FALSE	ACH-000443
OVKATE_OVARY	SHISA9--U91319.1	30	7	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	31	0	0.54	1	0.3876	0.0904	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	OVKATE_OVARY	0.54	1	0.478	FALSE	4	37	0	19	0	FALSE	ACH-000443
OVKATE_OVARY	MT-TA--MT-TN	26	21	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3359	0.2713	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVKATE_OVARY	1	1	0.6072	FALSE	369	2501	205	193	0	FALSE	ACH-000443
OVKATE_OVARY	MT-TA--MT-TN	8	84	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1034	1.0854	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVKATE_OVARY	1	1	1.1888	FALSE	369	2501	205	193	0	FALSE	ACH-000443
OVKATE_OVARY	MT-TA--MT-TN	16	48	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2067	0.6202	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVKATE_OVARY	1	1	0.8269	FALSE	369	2501	205	193	0	FALSE	ACH-000443
OVKATE_OVARY	MCCC1--MCF2L2	25	8	MCCC1	11709	chr3:182775099:-	MCF2L2	41047	chr3:183059418:-	ONLY_REF_SPLICE	YES	90	1	0.27	0.97	0.323	0.1034	LOCAL_REARRANGEMENT:-:[61968],MCCC1->chr3:182733006-182833863:-,methylcrotonoyl-CoA_carboxylase_1,MCF2L2->MCF.2_cell_line_derived_transforming_sequence-like_2,chr3:182895831-183146566:-	OVKATE_OVARY	0.27	0.97	0.4264	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	MT-TA--MT-TN	27	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3489	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVKATE_OVARY	1	1	0.3489	FALSE	369	2501	205	193	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND6--MT-TE	21	21	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2713	0.2713	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVKATE_OVARY	1	1	0.5426	FALSE	499	1288	110	792	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	24	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	10834	5	0	0.84	0.3101	0.0258	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.84	0.3359	FALSE	230	193	14	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ATP6--MT-CO2	22	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	65	1	0.3	0.97	0.2843	0.0775	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OVKATE_OVARY	0.3	0.97	0.3618	FALSE	59	21	0	114	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND6--MT-TE	22	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2843	0.0775	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVKATE_OVARY	1	1	0.3618	FALSE	499	1288	110	792	0	FALSE	ACH-000443
OVKATE_OVARY	MT-TA--MT-TN	5	65	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0.8399	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVKATE_OVARY	1	1	0.9045	FALSE	369	2501	205	193	0	FALSE	ACH-000443
OVKATE_OVARY	RP11-274B21.1--RP11-155G14.6	21	1	RP11-274B21.1	2189	chr7:128173784:+	RP11-155G14.6	23326	chr7:128106617:+	ONLY_REF_SPLICE	YES	4	0	0.85	1	0.2713	0.0129	LOCAL_REARRANGEMENT:+:[62501],RP11-274B21.1->chr7:128171752-128269512:+,RP11-155G14.6->chr7:128095991-128109251:+	OVKATE_OVARY	0.85	1	0.2842	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	C15orf57--CBX3	17	15	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	32	16	0.5	0.67	0.2197	0.1938	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OVKATE_OVARY	0.5	0.67	0.4135	TRUE	267	562	48	632	0	FALSE	ACH-000443
OVKATE_OVARY	MT-TA--MT-TN	11	35	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1421	0.4522	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVKATE_OVARY	1	1	0.5943	FALSE	369	2501	205	193	0	FALSE	ACH-000443
OVKATE_OVARY	B4GALT5--RP11-435B5.7	3	62	B4GALT5	3552	chr20:48263502:-	RP11-435B5.7	16190	chr1:143533304:-	INCL_NON_REF_SPLICE	YES	159	0	0.29	1	0.0388	0.8011	B4GALT5->Oncogene{Bushman},beta-1,4-galactosyltransferase_5,chr20:48249482-48330415:-,RP11-435B5.7->chr1:143527555-143533272:-	OVKATE_OVARY	0.29	1	0.8399	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	HELQ--FAM175A	14	5	HELQ	5683	chr4:84367988:-	FAM175A	36848	chr4:84384761:-	ONLY_REF_SPLICE	YES	6	11	0.76	0.63	0.1809	0.0646	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[5083],HELQ->chr4:84328496-84377009:-,helicase,_POLQ-like,FAM175A->chr4:84382092-84444501:-,family_with_sequence_similarity_175_member_A	OVKATE_OVARY	0.63	0.76	0.2455	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	RP11-123O10.4--GRIP1	15	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1938	0.0129	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OVKATE_OVARY	1	1	0.2067	FALSE	416	2512	207	587	0	FALSE	ACH-000443
OVKATE_OVARY	SLC45A3--SLC41A1	15	1	SLC45A3	1066	chr1:205649522:-	SLC41A1	15301	chr1:205770188:-	ONLY_REF_SPLICE	YES	0	22	1	0.42	0.1938	0.0129	HGNC_GENEFAM,SLC45A3->Oncogene{Bushman},chr1:205626979-205649587:-,solute_carrier_family_45_member_3,SLC41A1->chr1:205758221-205782876:-,solute_carrier_family_41_member_1	OVKATE_OVARY	0.42	1	0.2067	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	MT-TA--MT-TC	13	8	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.168	0.1034	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVKATE_OVARY	1	1	0.2714	FALSE	462	80	0	856	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND3--MT-ATP8	14	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1809	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	1	1	0.1809	FALSE	351	233	23	137	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND6--MT-TE	8	21	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1034	0.2713	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVKATE_OVARY	1	1	0.3747	FALSE	499	1288	110	792	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ATP6--MT-CO2	12	4	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	62	1	0.21	0.94	0.1551	0.0517	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OVKATE_OVARY	0.21	0.94	0.2068	FALSE	59	21	0	114	0	FALSE	ACH-000443
OVKATE_OVARY	MT-TA--MT-TN	13	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.168	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVKATE_OVARY	1	1	0.168	FALSE	369	2501	205	193	0	FALSE	ACH-000443
OVKATE_OVARY	RP11-274B21.1--RP11-155G14.6	12	2	RP11-274B21.1	2189	chr7:128173784:+	RP11-155G14.6	22227	chr7:128097255:+	ONLY_REF_SPLICE	YES	4	0	0.78	1	0.1551	0.0258	LOCAL_REARRANGEMENT:+:[62501],RP11-274B21.1->chr7:128171752-128269512:+,RP11-155G14.6->chr7:128095991-128109251:+	OVKATE_OVARY	0.78	1	0.1809	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	10	7	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12529	62	0	0.22	0.1292	0.0904	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.22	0.2196	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	11	3	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	12875	0	0	1	0.1421	0.0388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	1	0.1809	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND6--MT-TE	4	30	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0.3876	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVKATE_OVARY	1	1	0.4393	FALSE	499	1288	110	792	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	10	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	12812	0	0	1	0.1292	0.0388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	1	0.168	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	8	11	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12400	62	0	0.23	0.1034	0.1421	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.23	0.2455	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-TA--MT-TC	8	11	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1034	0.1421	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVKATE_OVARY	1	1	0.2455	FALSE	462	80	0	856	0	FALSE	ACH-000443
OVKATE_OVARY	TXNIP--OTUD7B	5	23	TXNIP	3057	chr1:145440525:+	OTUD7B	9438	chr1:149949470:-	INCL_NON_REF_SPLICE	YES	842	53	0.03	0.35	0.0646	0.2972	TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein,OTUD7B->OTU_deubiquitinase_7B,chr1:149909705-149982625:-	OVKATE_OVARY	0.03	0.35	0.3618	TRUE	0	0	0	1	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND6--MT-TE	3	30	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.3876	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVKATE_OVARY	1	1	0.4264	FALSE	499	1288	110	792	0	FALSE	ACH-000443
OVKATE_OVARY	RP11-96H19.1--RP11-446N19.1	9	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1163	0.0775	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVKATE_OVARY	0.88	1	0.1938	FALSE	515	4851	409	746	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND1--MT-TL1	4	25	MT-ND1	1342	chrM:3648:+	MT-TL1	5013	chrM:3286:+	INCL_NON_REF_SPLICE	YES	42	0	0.41	1	0.0517	0.323	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	OVKATE_OVARY	0.41	1	0.3747	FALSE	210	95	5	49	0	FALSE	ACH-000443
OVKATE_OVARY	MT-TC--MT-TY	10	1	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1292	0.0129	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVKATE_OVARY	1	1	0.1421	FALSE	51	280	19	36	0	FALSE	ACH-000443
OVKATE_OVARY	MT-TA--MT-TC	10	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1292	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVKATE_OVARY	1	1	0.1292	FALSE	462	80	0	856	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND6--MT-TE	5	19	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0.2455	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVKATE_OVARY	1	1	0.3101	FALSE	499	1288	110	792	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	9	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10829	8	0	0.58	0.1163	0.0258	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.58	0.1421	FALSE	230	198	14	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	9	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12342	8	0	0.58	0.1163	0.0258	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.58	0.1421	FALSE	231	205	14	283	0	FALSE	ACH-000443
OVKATE_OVARY	C15orf57--CBX3	7	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	29	16	0.36	0.5	0.0904	0.1163	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OVKATE_OVARY	0.36	0.5	0.2067	TRUE	267	562	48	632	0	FALSE	ACH-000443
OVKATE_OVARY	WDR19--SLC8A1-AS1	8	4	WDR19	6519	chr4:39201213:+	SLC8A1-AS1	52818	chr2:40332049:+	ONLY_REF_SPLICE	YES	10	0	0.55	1	0.1034	0.0517	WDR19->WD_repeat_domain_19,chr4:39184024-39287430:+,SLC8A1-AS1->SLC8A1_antisense_RNA_1,chr2:40013593-40482349:+	OVKATE_OVARY	0.55	1	0.1551	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	7	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12787	8	0	0.64	0.0904	0.0904	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.64	0.1808	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND1--MT-TL1	5	14	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0646	0.1809	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	OVKATE_OVARY	0.9	1	0.2455	FALSE	210	95	5	49	0	FALSE	ACH-000443
OVKATE_OVARY	TXNIP--OTUD7B	7	6	TXNIP	3057	chr1:145440525:+	OTUD7B	10558	chr1:149943179:-	ONLY_REF_SPLICE	YES	842	60	0.02	0.18	0.0904	0.0775	TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein,OTUD7B->OTU_deubiquitinase_7B,chr1:149909705-149982625:-	OVKATE_OVARY	0.02	0.18	0.1679	TRUE	0	0	0	1	0	FALSE	ACH-000443
OVKATE_OVARY	MT-TA--MT-TN	8	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1034	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVKATE_OVARY	1	1	0.1034	FALSE	369	2501	205	193	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND1--MT-TL1	4	15	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	8	0	0.7	1	0.0517	0.1938	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	OVKATE_OVARY	0.7	1	0.2455	FALSE	210	95	5	49	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	5	11	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	12400	194	0	0.08	0.0646	0.1421	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.08	0.2067	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	7	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10834	8	0	0.53	0.0904	0.0258	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.53	0.1162	FALSE	230	193	14	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ATP6--MT-CO2	5	8	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	65	0	0.17	1	0.0646	0.1034	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OVKATE_OVARY	0.17	1	0.168	FALSE	59	21	0	114	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	5	8	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	12813	0	0	1	0.0646	0.1034	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	1	0.168	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	4	12	MT-ND4	1988	chrM:11747:+	MT-ATP8	5470	chrM:8457:+	INCL_NON_REF_SPLICE	YES	12873	0	0	1	0.0517	0.1551	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	1	0.2068	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	4	12	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	6715	551	0	0.03	0.0517	0.1551	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.03	0.2068	FALSE	231	215	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	CC2D1A--CEP112	6	3	CC2D1A	10090	chr19:14034624:+	CEP112	53316	chr17:63685336:-	ONLY_REF_SPLICE	YES	26	8	0.26	0.53	0.0775	0.0388	CC2D1A->chr19:14017014-14041692:+,coiled-coil_and_C2_domain_containing_1A,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	OVKATE_OVARY	0.26	0.53	0.1163	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	MT-ATP6--MT-CO2	6	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	26	0	0.26	1	0.0775	0.0388	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OVKATE_OVARY	0.26	1	0.1163	FALSE	59	21	0	114	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	5	7	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	12576	0	0	1	0.0646	0.0904	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	1	0.155	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	5	7	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	12437	0	0	1	0.0646	0.0904	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	1	0.155	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	5	6	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	12747	981	0	0.01	0.0646	0.0775	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.01	0.1421	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	4	9	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	NO	13187	848	0	0.02	0.0517	0.1163	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.02	0.168	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	RP4-565E6.1--HYDIN	6	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0775	0.0129	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	OVKATE_OVARY	1	1	0.0904	TRUE	456	1387	91	133	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	3	12	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	12720	0	0	1	0.0388	0.1551	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	1	0.1939	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0775	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVKATE_OVARY	1	1	0.0775	FALSE	499	1288	110	792	0	FALSE	ACH-000443
OVKATE_OVARY	MT-TC--MT-TY	6	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0775	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVKATE_OVARY	1	1	0.0775	FALSE	51	280	19	36	0	FALSE	ACH-000443
OVKATE_OVARY	HADHA--ZNF385B	5	3	HADHA	7852	chr2:26453060:-	ZNF385B	48282	chr2:180310455:-	ONLY_REF_SPLICE	YES	66	24	0.11	0.25	0.0646	0.0388	{Klijn_CCL:Ovary=1},HADHA->chr2:26413504-26467594:-,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_alpha_subunit,ZNF385B->chr2:180306709-180726232:-,zinc_finger_protein_385B	OVKATE_OVARY	0.11	0.25	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	MT-ATP6--MT-CO2	5	3	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	48	1	0.14	0.89	0.0646	0.0388	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OVKATE_OVARY	0.14	0.89	0.1034	FALSE	59	21	0	114	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	5	3	MT-ND4	1510	chrM:11269:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13515	8	0	0.5	0.0646	0.0388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.5	0.1034	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	SHISA9--U91319.1	4	7	SHISA9	9974	chr16:13297406:+	U91319.1	21484	chr16:13352190:+	ONLY_REF_SPLICE	YES	31	0	0.26	1	0.0517	0.0904	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	OVKATE_OVARY	0.26	1	0.1421	FALSE	0	14	0	12	0	FALSE	ACH-000443
OVKATE_OVARY	TXNIP--OTUD7B	3	11	TXNIP	2910	chr1:145440378:+	OTUD7B	9397	chr1:149949511:-	INCL_NON_REF_SPLICE	YES	999	62	0.01	0.18	0.0388	0.1421	TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein,OTUD7B->OTU_deubiquitinase_7B,chr1:149909705-149982625:-	OVKATE_OVARY	0.01	0.18	0.1809	TRUE	0	0	0	1	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ATP6--MT-CO2	5	2	MT-ATP6	1098	chrM:8624:+	MT-CO2	4969	chrM:7873:+	INCL_NON_REF_SPLICE	YES	23	2	0.23	0.78	0.0646	0.0258	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OVKATE_OVARY	0.23	0.78	0.0904	FALSE	59	21	0	114	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	5	1	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	12252	1141	0	0.01	0.0646	0.0129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.01	0.0775	FALSE	231	205	14	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-TA--MT-TC	3	9	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.1163	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVKATE_OVARY	1	1	0.1551	FALSE	462	80	0	856	0	FALSE	ACH-000443
OVKATE_OVARY	BCR--GNAZ	5	0	BCR	24501	chr22:23637342:+	GNAZ	42389	chr22:23437434:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0646	0	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[54667],BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,GNAZ->G_protein_subunit_alpha_z,chr22:23412540-23467224:+	OVKATE_OVARY	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	CEP112--CC2D1A	4	4	CEP112	35052	chr17:63739186:-	CC2D1A	54964	chr19:14037330:+	ONLY_REF_SPLICE	YES	9	28	0.47	0.22	0.0517	0.0517	CEP112->centrosomal_protein_112,chr17:63631656-64188202:-,CC2D1A->chr19:14017014-14041692:+,coiled-coil_and_C2_domain_containing_1A	OVKATE_OVARY	0.22	0.47	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	MT-ATP6--MT-CO2	4	4	MT-ATP6	1141	chrM:8667:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	61	1	0.12	0.89	0.0517	0.0517	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OVKATE_OVARY	0.12	0.89	0.1034	FALSE	59	21	0	114	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	3	8	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	12733	0	0	1	0.0388	0.1034	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	1	0.1422	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ATP6--MT-CO2	4	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	NO	26	0	0.21	1	0.0517	0.0388	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OVKATE_OVARY	0.21	1	0.0905	FALSE	59	21	0	114	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	3	7	MT-ND4	1779	chrM:11538:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12743	8	0	0.56	0.0388	0.0904	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.56	0.1292	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	4	3	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	14460	792	0	0.01	0.0517	0.0388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.01	0.0905	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	4	3	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	12934	0	0	1	0.0517	0.0388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	1	0.0905	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ATP6--MT-CO2	4	2	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	45	0	0.12	1	0.0517	0.0258	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OVKATE_OVARY	0.12	1	0.0775	FALSE	59	21	0	114	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ATP6--MT-CO2	4	2	MT-ATP6	1142	chrM:8668:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	61	0	0.09	1	0.0517	0.0258	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OVKATE_OVARY	0.09	1	0.0775	FALSE	59	21	0	114	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	4	2	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	10804	0	0	1	0.0517	0.0258	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	1	0.0775	FALSE	230	197	14	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND3--MT-ATP8	4	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	1	1	0.0517	FALSE	351	233	23	137	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1531	chrM:11290:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	14834	5	0	0.58	0.0388	0.0517	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.58	0.0905	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	12529	1946	0	0	0.0388	0.0517	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0	0.0905	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVKATE_OVARY	1	1	0.0517	FALSE	369	2501	205	193	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	3	3	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	13581	0	0	1	0.0388	0.0388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	1	0.0776	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	CC2D1A--CEP112	3	2	CC2D1A	9885	chr19:14034419:+	CEP112	53316	chr17:63685336:-	ONLY_REF_SPLICE	YES	50	8	0.09	0.38	0.0388	0.0258	CC2D1A->chr19:14017014-14041692:+,coiled-coil_and_C2_domain_containing_1A,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	OVKATE_OVARY	0.09	0.38	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	EXT1--SAMD12	3	2	EXT1	2769	chr8:119122324:-	SAMD12	31808	chr8:119209971:-	ONLY_REF_SPLICE	YES	38	7	0.12	0.42	0.0388	0.0258	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:-:[77606],EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	OVKATE_OVARY	0.12	0.42	0.0646	TRUE	0	6	0	5	5	TRUE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	14457	551	0	0.01	0.0388	0.0258	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.01	0.0646	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1521	chrM:11280:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	14357	594	0	0.01	0.0388	0.0258	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.01	0.0646	FALSE	231	217	16	283	0	FALSE	ACH-000443
OVKATE_OVARY	TXNIP--OTUD7B	3	2	TXNIP	2672	chr1:145440140:+	OTUD7B	10558	chr1:149943179:-	ONLY_REF_SPLICE	YES	1079	60	0	0.08	0.0388	0.0258	TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein,OTUD7B->OTU_deubiquitinase_7B,chr1:149909705-149982625:-	OVKATE_OVARY	0	0.08	0.0646	FALSE	0	0	0	1	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1017	chrM:10776:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1220	0	0	1	0.0388	0.0129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	1	0.0517	FALSE	230	190	14	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	7004	551	0	0.01	0.0388	0.0129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	0	0.01	0.0517	FALSE	230	193	14	283	0	FALSE	ACH-000443
OVKATE_OVARY	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0129	0.1163	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVKATE_OVARY	1	1	0.1292	FALSE	192	492	57	212	0	FALSE	ACH-000443
OVKATE_OVARY	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0.1163	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVKATE_OVARY	1	1	0.1292	FALSE	76	45	6	15	0	FALSE	ACH-000443
OVKATE_OVARY	WDR19--SLC8A1-AS1	3	1	WDR19	6519	chr4:39201213:+	SLC8A1-AS1	65978	chr2:40478824:+	ONLY_REF_SPLICE	YES	10	0	0.29	1	0.0388	0.0129	WDR19->WD_repeat_domain_19,chr4:39184024-39287430:+,SLC8A1-AS1->SLC8A1_antisense_RNA_1,chr2:40013593-40482349:+	OVKATE_OVARY	0.29	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	CEP112--CC2D1A	2	4	CEP112	35052	chr17:63739186:-	CC2D1A	55114	chr19:14037480:+	ONLY_REF_SPLICE	YES	9	32	0.4	0.16	0.0258	0.0517	CEP112->centrosomal_protein_112,chr17:63631656-64188202:-,CC2D1A->chr19:14017014-14041692:+,coiled-coil_and_C2_domain_containing_1A	OVKATE_OVARY	0.16	0.4	0.0775	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	MT-ND1--MT-TL1	3	0	MT-ND1	1270	chrM:3576:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	OVKATE_OVARY	1	1	0.0388	FALSE	210	95	5	49	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND4--MT-ATP8	3	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVKATE_OVARY	1	1	0.0388	FALSE	231	204	14	283	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVKATE_OVARY	1	1	0.0388	FALSE	499	1288	110	792	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVKATE_OVARY	1	1	0.0388	FALSE	499	1288	110	792	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVKATE_OVARY	1	1	0.0388	FALSE	499	1288	110	792	0	FALSE	ACH-000443
OVKATE_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVKATE_OVARY	1	1	0.0388	FALSE	499	1288	110	792	0	FALSE	ACH-000443
OVKATE_OVARY	MT-TA--MT-TN	3	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVKATE_OVARY	1	1	0.0388	FALSE	369	2501	205	193	0	FALSE	ACH-000443
OVKATE_OVARY	MT-TC--MT-TY	3	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVKATE_OVARY	1	1	0.0388	FALSE	51	280	19	36	0	FALSE	ACH-000443
OVKATE_OVARY	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0129	0.1034	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVKATE_OVARY	1	1	0.1163	FALSE	467	2173	244	435	0	FALSE	ACH-000443
OVKATE_OVARY	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0129	0.0904	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVKATE_OVARY	0.8	1	0.1033	FALSE	275	511	55	178	0	FALSE	ACH-000443
OVKATE_OVARY	DSTYK--SLC41A1	2	1	DSTYK	1329	chr1:205180399:-	SLC41A1	26250	chr1:205770188:-	ONLY_REF_SPLICE	YES	13	22	0.19	0.12	0.0258	0.0129	DSTYK->chr1:205111632-205180727:-,dual_serine/threonine_and_tyrosine_protein_kinase,SLC41A1->chr1:205758221-205782876:-,solute_carrier_family_41_member_1	OVKATE_OVARY	0.12	0.19	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	HDAC5--RECK	2	1	HDAC5	4273	chr17:42188097:-	RECK	42775	chr9:36107973:+	ONLY_REF_SPLICE	YES	25	0	0.11	1	0.0258	0.0129	HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5,RECK->chr9:36036430-36124448:+,reversion_inducing_cysteine_rich_protein_with_kazal_motifs	OVKATE_OVARY	0.11	1	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	KBTBD2--RP9P	2	1	KBTBD2	6728	chr7:32914604:-	RP9P	18459	chr7:32961042:-	ONLY_REF_SPLICE	YES	68	11	0.04	0.21	0.0258	0.0129	LOCAL_REARRANGEMENT:-:[22684],KBTBD2->chr7:32907784-32933743:-,kelch_repeat_and_BTB_domain_containing_2,RP9P->chr7:32956427-32982788:-,retinitis_pigmentosa_9_pseudogene	OVKATE_OVARY	0.04	0.21	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	RNF212--CTBP1	2	1	RNF212	6789	chr4:1090553:-	CTBP1	25519	chr4:1235307:-	ONLY_REF_SPLICE	YES	113	83	0.03	0.03	0.0258	0.0129	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[97886],RNF212->chr4:1050038-1107350:-,ring_finger_protein_212,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	OVKATE_OVARY	0.03	0.03	0.0387	TRUE	1	6	0	5	1	FALSE	ACH-000443
OVKATE_OVARY	RP11-362F19.1--HIST1H2BG	2	1	RP11-362F19.1	1460	chr4:142253313:-	HIST1H2BG	10751	chr6:26216872:-	ONLY_REF_SPLICE	YES	358	0	0.01	1	0.0258	0.0129	RP11-362F19.1->chr4:142240604-142253772:-,HIST1H2BG->chr6:26216428-26216872:-,histone_cluster_1,_H2bg	OVKATE_OVARY	0.01	1	0.0387	FALSE	0	0	0	1	0	FALSE	ACH-000443
OVKATE_OVARY	RP11-624L4.1--RP11-265N7.1	2	1	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	11	0	0.21	1	0.0258	0.0129	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	OVKATE_OVARY	0.21	1	0.0387	FALSE	0	20	1	20	0	FALSE	ACH-000443
OVKATE_OVARY	AGRN--NOC4L	2	0	AGRN	4732	chr1:970704:+	NOC4L	29706	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|LUSC:1],{Klijn_CCL:Breast=1,Lung=1},AGRN->agrin,chr1:955503-991496:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	OVKATE_OVARY	1	1	0.0258	TRUE	0	12	0	2	3	TRUE	ACH-000443
OVKATE_OVARY	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OVKATE_OVARY	1	1	0.0258	FALSE	93	270	15	244	0	FALSE	ACH-000443
OVKATE_OVARY	SPEN--BIRC5	2	0	SPEN	2608	chr1:16199631:+	BIRC5	31547	chr17:76212745:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,BIRC5->baculoviral_IAP_repeat_containing_5,chr17:76210267-76221717:+	OVKATE_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	TMBIM4--OVOL2	2	0	TMBIM4	1218	chr12:66563635:-	OVOL2	26880	chr20:17937681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	TMBIM4->chr12:66517697-66563765:-,chr12:66517709-66563852:-,transmembrane_BAX_inhibitor_motif_containing_4,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	OVKATE_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	AFAP1--ABLIM2	1	2	AFAP1	1271	chr4:7941383:-	ABLIM2	35613	chr4:8099009:-	ONLY_REF_SPLICE	YES	81	25	0.04	0.11	0.0129	0.0258	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	OVKATE_OVARY	0.04	0.11	0.0387	TRUE	0	0	0	1	0	FALSE	ACH-000443
OVKATE_OVARY	SHISA9--U91319.1	1	2	SHISA9	7683	chr16:13010672:+	U91319.1	24024	chr16:13568067:+	ONLY_REF_SPLICE	NO	51	3	0.06	0.5	0.0129	0.0258	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	OVKATE_OVARY	0.06	0.5	0.0387	FALSE	0	1	0	6	0	FALSE	ACH-000443
OVKATE_OVARY	SHISA9--U91319.1	1	2	SHISA9	9974	chr16:13297406:+	U91319.1	24024	chr16:13568067:+	ONLY_REF_SPLICE	YES	31	3	0.09	0.5	0.0129	0.0258	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	OVKATE_OVARY	0.09	0.5	0.0387	FALSE	1	17	0	8	0	FALSE	ACH-000443
OVKATE_OVARY	WDR19--SLC8A1-AS1	1	2	WDR19	6519	chr4:39201213:+	SLC8A1-AS1	53070	chr2:40332301:+	ONLY_REF_SPLICE	NO	10	1	0.23	0.75	0.0129	0.0258	WDR19->WD_repeat_domain_19,chr4:39184024-39287430:+,SLC8A1-AS1->SLC8A1_antisense_RNA_1,chr2:40013593-40482349:+	OVKATE_OVARY	0.23	0.75	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000443
OVKATE_OVARY	EFNA5--FBXL17	1	1	EFNA5	1407	chr5:107006190:-	FBXL17	24161	chr5:107216880:-	ONLY_REF_SPLICE	YES	28	16	0.07	0.11	0.0129	0.0129	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Brain_-_Frontal_Cortex_(BA9)=1,Nerve_-_Tibial=1},{Klijn_CCL:Head-Neck=1,Lung=1},EFNA5->chr5:106712590-107006596:-,ephrin_A5,FBXL17->F-box_and_leucine-rich_repeat_protein_17,chr5:107194736-107717799:-	OVKATE_OVARY	0.07	0.11	0.0258	TRUE	0	0	0	2	0	FALSE	ACH-000443
OVKATE_OVARY	RP11-274B21.1--METTL2B	1	1	RP11-274B21.1	2189	chr7:128173784:+	METTL2B	23404	chr7:128119212:+	ONLY_REF_SPLICE	YES	4	42	0.33	0.05	0.0129	0.0129	LOCAL_REARRANGEMENT:+:[25096],RP11-274B21.1->chr7:128171752-128269512:+,METTL2B->chr7:128116783-128146656:+,methyltransferase_like_2B	OVKATE_OVARY	0.05	0.33	0.0258	TRUE	0	1	0	1	1	TRUE	ACH-000443
OVKATE_OVARY	SUPT5H--KRT7	1	1	SUPT5H	17708	chr19:39963133:+	KRT7	29409	chr12:52632503:+	ONLY_REF_SPLICE	NO	113	3182	0.02	0	0.0129	0.0129	SUPT5H->SPT5_homolog,_DSIF_elongation_factor_subunit,chr19:39926796-39967310:+,KRT7->chr12:52626304-52645970:+,keratin_7	OVKATE_OVARY	0	0.02	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000443
OVKATE_OVARY	WDR19--SLC8A1-AS1	1	1	WDR19	6519	chr4:39201213:+	SLC8A1-AS1	54332	chr2:40341142:+	ONLY_REF_SPLICE	NO	10	0	0.17	1	0.0129	0.0129	WDR19->WD_repeat_domain_19,chr4:39184024-39287430:+,SLC8A1-AS1->SLC8A1_antisense_RNA_1,chr2:40013593-40482349:+	OVKATE_OVARY	0.17	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000443
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF3--PBX1	1514	498	TCF3	13408	chr19:1619110:-	PBX1	46216	chr1:164761731:+	ONLY_REF_SPLICE	YES	763	1	0.73	1	12.1412	3.9936	Cosmic{samples=197,mutations=26,papers=2},Mitelman{ALL=2,BL=2},chimerdb_pubmed{childhood preBcell acute lymphoblastic leukemia(ALL),Bcell precursor acute lymphoblastic leukemia,preBcell acute lymphoblastic leukemia,acute lymphoblastoid leukemia (ALL),acute lymphoblastic leukemia,Acute leukemia,acute lymphoblastic leukemia (ALL),lymphoma,acute lymphoblastic leukaemias (ALL),CML, ALL,childhood preB acute lymphoblastic leukemia (ALL),severalleukaemia,pediatric preBcell leukemia,acute lymphoblastic eukemia/lymphoma,Acute lymphoblastic leukaemia(ALL),leukemia,preB acute lymphoblastic leukemia (ALL),pediatric preB cell leukemia,acute leukemia,acute lymphoblastic leukemias,preB acute lymphoblastoid leukemias (ALL),acute lymphoblastic leukaemia (ALL),preB acute lymphoblastic leukemia, acute lymphoblastic leukemia (ALL),Several human leukemias,preBcell acute lymphocytic leukemia, acute myeloid leukemia},TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	16.1348	TRUE	0	0	0	4	0	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	239	15	PTMA	6593	chr2:232577226:+	NCL	15607	chr2:232326275:-	INCL_NON_REF_SPLICE	YES	7916	2400	0.03	0.1	1.9166	0.1203	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.1	2.0369	TRUE	0	0	0	5	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	136	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0906	0.1123	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2029	TRUE	508	994	45	981	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	94	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7538	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7538	TRUE	0	0	0	518	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	87	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6977	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6977	TRUE	519	3926	326	965	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	79	5	PTMA	6593	chr2:232577226:+	NCL	16478	chr2:232325404:-	INCL_NON_REF_SPLICE	YES	7916	1652	0.01	0.05	0.6335	0.0401	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.6736	TRUE	0	0	0	5	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	43	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3448	0.0401	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3849	FALSE	416	2512	207	587	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	43	4	PTMA	6054	chr2:232576687:+	NCL	16410	chr2:232325472:-	INCL_NON_REF_SPLICE	YES	7734	1844	0.01	0.02	0.3448	0.0321	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.3769	TRUE	0	0	0	5	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	100	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0401	0.8019	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	0.842	FALSE	344	826	44	306	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	26	4	PTMA	6054	chr2:232576687:+	NCL	16401	chr2:232325481:-	INCL_NON_REF_SPLICE	YES	7734	1807	0	0.02	0.2085	0.0321	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.2406	TRUE	0	0	0	5	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	25	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2005	0.0401	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2406	FALSE	462	80	0	856	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	85	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0241	0.6816	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7057	FALSE	344	821	44	306	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OR51S1--TP53I11	24	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1925	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1925	TRUE	402	216	10	229	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	82	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	26	0	0.77	1	0.0241	0.6576	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.6817	FALSE	344	827	44	306	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF3--PBX1	19	11	TCF3	10234	chr19:1622396:-	PBX1	46419	chr1:164761934:+	INCL_NON_REF_SPLICE	YES	702	246	0.04	0.11	0.1524	0.0882	Cosmic{samples=197,mutations=26,papers=2},Mitelman{ALL=2,BL=2},chimerdb_pubmed{childhood preBcell acute lymphoblastic leukemia(ALL),Bcell precursor acute lymphoblastic leukemia,preBcell acute lymphoblastic leukemia,acute lymphoblastoid leukemia (ALL),acute lymphoblastic leukemia,Acute leukemia,acute lymphoblastic leukemia (ALL),lymphoma,acute lymphoblastic leukaemias (ALL),CML, ALL,childhood preB acute lymphoblastic leukemia (ALL),severalleukaemia,pediatric preBcell leukemia,acute lymphoblastic eukemia/lymphoma,Acute lymphoblastic leukaemia(ALL),leukemia,preB acute lymphoblastic leukemia (ALL),pediatric preB cell leukemia,acute leukemia,acute lymphoblastic leukemias,preB acute lymphoblastoid leukemias (ALL),acute lymphoblastic leukaemia (ALL),preB acute lymphoblastic leukemia, acute lymphoblastic leukemia (ALL),Several human leukemias,preBcell acute lymphocytic leukemia, acute myeloid leukemia},TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.11	0.2406	TRUE	0	0	0	4	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	18	8	PTMA	6593	chr2:232577226:+	NCL	16427	chr2:232325455:-	INCL_NON_REF_SPLICE	YES	7916	1768	0	0.01	0.1443	0.0642	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.2085	TRUE	0	0	0	5	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	13	15	PTMA	6593	chr2:232577226:+	NCL	15589	chr2:232326293:-	INCL_NON_REF_SPLICE	YES	7916	1903	0	0.01	0.1043	0.1203	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.2246	TRUE	0	0	0	5	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1283	0.016	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1443	FALSE	499	1288	110	792	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	14	5	PTMA	6054	chr2:232576687:+	NCL	15599	chr2:232326283:-	INCL_NON_REF_SPLICE	YES	7734	2169	0	0.01	0.1123	0.0401	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1524	TRUE	0	0	0	5	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0802	0.0802	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1604	FALSE	499	1288	110	792	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	12	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0962	0.016	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1122	FALSE	499	1288	110	792	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	11	5	PTMA	6054	chr2:232576687:+	NCL	16320	chr2:232325562:-	INCL_NON_REF_SPLICE	YES	7734	2555	0	0.01	0.0882	0.0401	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1283	TRUE	0	0	0	5	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	36	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0241	0.2887	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3128	FALSE	344	821	44	306	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	12	0	ZNF654	1688	chr3:88188941:+	HMGB2	12525	chr4:174253314:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0962	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0962	TRUE	0	0	0	518	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	11	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3361	0	0	1	0.0882	0.008	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0962	FALSE	13	9	0	364	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127577.11	11	1	NRIP1	2336	chr21:16415816:-	AF127577.11	17041	chr21:16346536:+	ONLY_REF_SPLICE	YES	89	0	0.12	1	0.0882	0.008	NEIGHBORS_OVERLAP:-:+:[21384],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127577.11->chr21:16343791-16365175:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.0962	FALSE	0	0	0	1	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	11	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0882	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0882	FALSE	189	492	56	216	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPG11--MRPL52	10	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0802	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0802	TRUE	38	11	0	19	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	9	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.55	1	0.0722	0.016	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.0882	FALSE	292	1546	117	613	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3337	0	0	1	0.0722	0.008	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0802	FALSE	13	9	0	364	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	21	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	2	0.83	0.93	0.0321	0.1684	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.93	0.2005	FALSE	189	492	56	216	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	8	2	PTMA	6045	chr2:232576678:+	NCL	13895	chr2:232327987:-	INCL_NON_REF_SPLICE	YES	7602	2168	0	0	0.0642	0.016	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0802	FALSE	0	0	0	3	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIPEPP3--ABHD12	8	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0642	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0642	TRUE	64	202	9	44	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHF21A--GLIS2	8	0	PHF21A	22701	chr11:45967391:-	GLIS2	42029	chr16:4386726:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0642	0	PHF21A->PHD_finger_protein_21A,chr11:45950871-46142985:-,GLIS2->GLIS_family_zinc_finger_2,chr16:4364762-4389598:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0642	TRUE	0	1	0	1	1	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	4	16	PTMA	6560	chr2:232577193:+	NCL	13903	chr2:232327979:-	INCL_NON_REF_SPLICE	NO	6751	2007	0	0.01	0.0321	0.1283	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1604	FALSE	0	0	0	3	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	6	7	PTMA	6055	chr2:232576688:+	NCL	13895	chr2:232327987:-	INCL_NON_REF_SPLICE	YES	7806	2168	0	0.01	0.0481	0.0561	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1042	TRUE	0	0	0	3	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	7	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	1	0.91	0.91	0.0561	0.0241	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.91	0.0802	FALSE	16	356	14	466	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	18	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0241	0.1443	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1684	FALSE	499	1288	110	792	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	5	9	PTMA	6913	chr2:232577546:+	NCL	16421	chr2:232325461:-	INCL_NON_REF_SPLICE	YES	7979	1745	0	0.01	0.0401	0.0722	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1123	TRUE	0	0	0	5	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	6	3	CCDC26	6922	chr8:130365050:-	LINC00977	13259	chr8:130229652:-	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.0481	0.0241	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.0722	TRUE	0	0	0	6	0	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	6	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0.016	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0641	TRUE	0	1	0	84	1	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	6	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0481	TRUE	0	0	0	434	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	6	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0481	TRUE	22	156	2	142	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	6	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0481	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0481	FALSE	515	4851	409	746	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	6	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0481	TRUE	0	0	0	518	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	4	7	PTMA	6054	chr2:232576687:+	NCL	15445	chr2:232326437:-	INCL_NON_REF_SPLICE	YES	7734	2075	0	0.01	0.0321	0.0561	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0882	FALSE	0	0	0	5	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	5	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	76	1	0.1	0.0401	0.0241	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.0642	TRUE	465	1949	224	605	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	53	13	0.16	0.43	0.0321	0.0481	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.43	0.0802	TRUE	267	562	48	632	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	10	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	9	0	0.59	1	0.0241	0.0802	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.1043	FALSE	344	826	44	306	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	10	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0241	0.0802	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1043	FALSE	499	1288	110	792	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0321	0.0481	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0802	FALSE	462	80	0	856	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	4	6	PTMA	6904	chr2:232577537:+	NCL	16460	chr2:232325422:-	INCL_NON_REF_SPLICE	YES	7983	1687	0	0.01	0.0321	0.0481	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0802	FALSE	0	0	0	5	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	4	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	113	0	0.07	1	0.0321	0.0401	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0722	FALSE	164	806	69	479	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	5	1	PTMA	6002	chr2:232576635:+	NCL	13906	chr2:232327976:-	INCL_NON_REF_SPLICE	YES	7485	1998	0	0	0.0401	0.008	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0481	FALSE	0	0	0	3	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERBB2IP--SREK1	5	0	ERBB2IP	1332	chr5:65222634:+	SREK1	41566	chr5:65449291:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0401	0	NEIGHBORS[57422],ERBB2IP->chr5:65222303-65378377:+,SREK1->chr5:65435799-65479443:+,splicing_regulatory_glutamic_acid/lysine-rich_protein_1	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0401	FALSE	0	2	0	3	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	4	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	20	1	0.26	0.0321	0.0241	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.0562	TRUE	458	1351	185	561	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	3	6	PTMA	6064	chr2:232576697:+	NCL	16387	chr2:232325495:-	INCL_NON_REF_SPLICE	YES	8468	1839	0	0	0.0241	0.0481	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0722	FALSE	0	0	0	5	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	1	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0321	0.008	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0401	FALSE	499	1288	110	792	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--SEPT7	4	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0321	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0321	TRUE	1	1	0	18	1	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	4	0	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0321	0	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0321	TRUE	0	2	0	11	2	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0321	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0321	TRUE	0	0	0	434	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	89	0	0.07	1	0.0241	0.0321	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0562	FALSE	125	705	46	456	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	3	4	PTMA	6551	chr2:232577184:+	NCL	16475	chr2:232325407:-	INCL_NON_REF_SPLICE	NO	6833	1647	0	0	0.0241	0.0321	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0562	FALSE	0	0	0	5	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	3	3	PTMA	6072	chr2:232576705:+	NCL	16491	chr2:232325391:-	INCL_NON_REF_SPLICE	NO	8789	1662	0	0	0.0241	0.0241	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0482	FALSE	0	0	0	5	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	3	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	1	1	0.86	0.86	0.0241	0.0241	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	0.86	0.0482	FALSE	0	9	0	55	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	3	1	PTMA	6062	chr2:232576695:+	NCL	21881	chr2:232319975:-	INCL_NON_REF_SPLICE	NO	8372	1010	0	0	0.0241	0.008	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0321	FALSE	0	0	0	1	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	2	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0.0401	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0561	FALSE	9	21	5	22	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	3	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0241	FALSE	0	24	0	62	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0241	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0241	FALSE	499	1288	110	792	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0241	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0241	FALSE	499	1288	110	792	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0241	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0241	TRUE	0	0	0	434	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PFKL--MT-ND4L	3	0	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0241	0	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0241	FALSE	0	0	0	33	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--SYTL2	3	0	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0241	TRUE	4	2	0	20	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	1	7	PTMA	6060	chr2:232576693:+	NCL	16305	chr2:232325577:-	ONLY_REF_SPLICE	NO	8257	2875	0	0	0.008	0.0561	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0641	FALSE	0	0	0	5	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF145--EBF1	2	1	RNF145	4704	chr5:158630442:-	EBF1	27586	chr5:158267118:-	ONLY_REF_SPLICE	YES	136	363	0.02	0.01	0.016	0.008	NEIGHBORS[57648],RNF145->chr5:158584417-158637061:-,ring_finger_protein_145,EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--ZFC3H1	2	0	CPSF6	11046	chr12:69656342:+	ZFC3H1	37555	chr12:72024734:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,ZFC3H1->chr12:72003252-72061505:-,zinc_finger_C3H1-type_containing	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GUK1--ARF1	2	0	GUK1	1402	chr1:228328064:+	ARF1	16756	chr1:228284779:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:7=pct:5.3],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6]},GTEx_v2:{count=7;pct=0.08%;dist=Whole_Blood=6,Esophagus_-_Gastroesophageal_Junction=1},LOCAL_REARRANGEMENT:+:[40751],GUK1->chr1:228327663-228336685:+,guanylate_kinase_1,ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	16	1	0	2	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHACTR3--RBM38	2	0	PHACTR3	9518	chr20:58322890:+	RBM38	30529	chr20:55982599:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	PHACTR3->chr20:58152564-58422766:+,phosphatase_and_actin_regulator_3,RBM38->RNA_binding_motif_protein_38,chr20:55966463-55984389:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNB1	2	0	RCC1	2175	chr1:28834672:+	GNB1	21015	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	10	0	7	3	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF145--EBF1	2	0	RNF145	1823	chr5:158636239:-	EBF1	27586	chr5:158267118:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	NEIGHBORS[57648],RNF145->chr5:158584417-158637061:-,ring_finger_protein_145,EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1149M10.2--CTC-326K19.6	2	0	RP11-1149M10.2	1128	chr8:82066641:+	CTC-326K19.6	10106	chr19:50413141:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	RP11-1149M10.2->chr8:82066514-82076834:+,CTC-326K19.6->chr19:50412758-50461648:-	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG5--PHF14	2	0	SNHG5	1780	chr6:86387672:-	PHF14	33722	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	5	8	0	33	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	FALSE	272	151	14	158	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--CRK	2	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	6	50	7	115	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--PHF14	1	2	SF1	3289	chr11:64543970:-	PHF14	40742	chr7:11150977:+	ONLY_REF_SPLICE	YES	571	62	0.01	0.05	0.008	0.016	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADARB2--PFKP	1	1	ADARB2	1426	chr10:1779245:-	PFKP	26828	chr10:3124580:+	ONLY_REF_SPLICE	YES	1	415	0.67	0	0.008	0.008	{Klijn_CCL:Lung=1},ADARB2->Oncogene{Bushman},adenosine_deaminase,_RNA_specific_B2_(inactive),chr10:1228073-1779670:-,PFKP->chr10:3108525-3179904:+,phosphofructokinase,_platelet	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.67	0.016	FALSE	0	1	0	2	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP3S1--COMMD10	1	1	AP3S1	1626	chr5:115177803:+	COMMD10	21553	chr5:115469765:+	ONLY_REF_SPLICE	YES	141	72	0.01	0.03	0.008	0.008	GTEx&tcga_normals:14/3694=0.38%,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+,COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.016	FALSE	0	0	0	2	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--TOP2B	1	1	CPSF6	11046	chr12:69656342:+	TOP2B	21588	chr3:25686946:-	ONLY_REF_SPLICE	YES	320	533	0.01	0	0.008	0.008	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,TOP2B->Oncogene{Bushman},chr3:25639475-25706398:-,topoisomerase_(DNA)_II_beta	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-436K13.1--EBF1	1	1	CTC-436K13.1	1141	chr5:157602544:+	EBF1	13746	chr5:158267118:-	ONLY_REF_SPLICE	YES	0	363	1	0.01	0.008	0.008	CTC-436K13.1->chr5:157602404-157627024:+,EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOC2A--MAZ	1	1	DOC2A	2783	chr16:30032504:-	MAZ	19551	chr16:29819551:+	ONLY_REF_SPLICE	YES	3	1835	0.4	0	0.008	0.008	DOC2A->chr16:30016830-30034591:-,double_C2_domain_alpha,MAZ->MYC_associated_zinc_finger_protein,chr16:29817427-29823649:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.4	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--XRN1	1	1	IGLL5	1480	chr22:23230439:+	XRN1	10573	chr3:142151735:-	ONLY_REF_SPLICE	YES	295	17	0.01	0.11	0.008	0.008	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,XRN1->5'-3'_exoribonuclease_1,chr3:142025449-142166904:-	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.11	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHACTR3--RBM38	1	1	PHACTR3	14123	chr20:58349545:+	RBM38	30529	chr20:55982599:+	ONLY_REF_SPLICE	YES	979	376	0	0.01	0.008	0.008	PHACTR3->chr20:58152564-58422766:+,phosphatase_and_actin_regulator_3,RBM38->RNA_binding_motif_protein_38,chr20:55966463-55984389:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PINX1--RP1L1	1	1	PINX1	6234	chr8:10683662:-	RP1L1	17312	chr8:10480730:-	ONLY_REF_SPLICE	YES	251	0	0.01	1	0.008	0.008	NEIGHBORS[52776],PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.016	FALSE	1	8	0	15	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.008	0.008	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	FALSE	407	2205	196	549	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TOP2B--DDX5	1	1	TOP2B	15667	chr3:25668051:-	DDX5	41759	chr17:62498667:-	ONLY_REF_SPLICE	YES	1741	1129	0	0	0.008	0.008	TOP2B->Oncogene{Bushman},chr3:25639475-25706398:-,topoisomerase_(DNA)_II_beta,DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000922
RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAP2--UBE2R2	1	1	UBAP2	22482	chr9:33941647:-	UBE2R2	37979	chr9:33886879:+	ONLY_REF_SPLICE	YES	84	173	0.02	0.01	0.008	0.008	GTEx_v2:{count=3;pct=0.03%;dist=Adipose_-_Visceral_(Omentum)=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1},LOCAL_INVERSION:-:+:[1289],UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	RCHACV_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000922
IGR39_SKIN	TBL1X--WWC3	80	20	TBL1X	9851	chrX:9622362:+	WWC3	35204	chrX:10058811:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.9048	0.2262	TBL1X->chrX:9431335-9687780:+,transducin_(beta)-like_1X-linked,WWC3->WWC_family_member_3,chrX:9983602-10112518:+	IGR39_SKIN	1	1	1.131	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	TIMM23B--LINC00843	80	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9048	0.1923	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	IGR39_SKIN	1	1	1.0971	TRUE	508	994	45	981	0	FALSE	ACH-000550
IGR39_SKIN	TIMM23--RP11-464F9.1	48	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	210	7	0.19	0.88	0.5429	0.0226	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	IGR39_SKIN	0.19	0.88	0.5655	TRUE	519	3926	326	965	0	FALSE	ACH-000550
IGR39_SKIN	SSH2--STK11	45	12	SSH2	1339	chr17:28256956:-	STK11	40377	chr19:1218416:+	ONLY_REF_SPLICE	YES	53	54	0.52	0.51	0.509	0.1357	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	IGR39_SKIN	0.51	0.52	0.6447	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	OR51S1--TP53I11	43	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4863	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	IGR39_SKIN	1	1	0.4863	TRUE	402	216	10	229	0	FALSE	ACH-000550
IGR39_SKIN	SSH2--STK11	35	21	SSH2	5062	chr17:28175867:-	STK11	40377	chr19:1218416:+	ONLY_REF_SPLICE	YES	6	54	0.9	0.51	0.3959	0.2375	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	IGR39_SKIN	0.51	0.9	0.6334	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	FAM101A--RP11-114H23.2	22	10	FAM101A	6449	chr12:124780182:+	RP11-114H23.2	14613	chr12:76088755:-	ONLY_REF_SPLICE	YES	3	0	0.91	1	0.2488	0.1131	FAM101A->chr12:124457788-124800570:+,family_with_sequence_similarity_101_member_A,RP11-114H23.2->chr12:76087790-76092596:-	IGR39_SKIN	0.91	1	0.3619	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	NRIP1--AF127936.7	19	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.88	1	0.2149	0.0226	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	IGR39_SKIN	0.88	1	0.2375	FALSE	292	1546	117	613	0	FALSE	ACH-000550
IGR39_SKIN	RP11-444D3.1--SOX5	17	8	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1923	0.0905	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	IGR39_SKIN	1	1	0.2828	TRUE	477	1352	189	275	0	FALSE	ACH-000550
IGR39_SKIN	MT-ATP6--MT-CO2	15	5	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	21	0	0.49	1	0.1697	0.0566	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR39_SKIN	0.49	1	0.2263	FALSE	59	21	0	114	0	FALSE	ACH-000550
IGR39_SKIN	MIPEPP3--ABHD12	16	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.181	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	IGR39_SKIN	1	1	0.181	TRUE	64	202	9	44	0	FALSE	ACH-000550
IGR39_SKIN	MT-ATP6--MT-CO2	13	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	23	1	0.44	0.95	0.147	0.0566	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR39_SKIN	0.44	0.95	0.2036	FALSE	59	21	0	114	0	FALSE	ACH-000550
IGR39_SKIN	ZNF654--HMGB2	14	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1583	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	IGR39_SKIN	1	1	0.1583	TRUE	0	0	0	518	0	FALSE	ACH-000550
IGR39_SKIN	ERC1--WNT5B	12	4	ERC1	18824	chr12:1299218:+	WNT5B	51638	chr12:1740464:+	ONLY_REF_SPLICE	YES	24	1	0.4	0.94	0.1357	0.0452	NEIGHBORS[33958],ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,WNT5B->Wnt_family_member_5B,chr12:1639057-1756409:+	IGR39_SKIN	0.4	0.94	0.1809	FALSE	0	0	0	2	0	FALSE	ACH-000550
IGR39_SKIN	MT-ND4--MT-ATP8	12	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8106	6	0	0.7	0.1357	0.0226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR39_SKIN	0	0.7	0.1583	FALSE	230	198	14	283	0	FALSE	ACH-000550
IGR39_SKIN	MT-TA--MT-TC	12	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1357	0.0226	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IGR39_SKIN	1	1	0.1583	FALSE	462	80	0	856	0	FALSE	ACH-000550
IGR39_SKIN	MT-ATP6--MT-CO2	11	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	23	0	0.41	1	0.1244	0.0566	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR39_SKIN	0.41	1	0.181	FALSE	59	21	0	114	0	FALSE	ACH-000550
IGR39_SKIN	NRIP1--AF127936.7	11	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.59	1	0.1244	0.0566	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	IGR39_SKIN	0.59	1	0.181	FALSE	125	705	46	456	0	FALSE	ACH-000550
IGR39_SKIN	MT-ND6--MT-TE	11	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1244	0.0226	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR39_SKIN	1	1	0.147	FALSE	499	1288	110	792	0	FALSE	ACH-000550
IGR39_SKIN	CTD-2337A12.1--CAST	10	5	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	116	1	0.11	0.1131	0.0566	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	IGR39_SKIN	0.11	1	0.1697	TRUE	347	1186	183	220	0	FALSE	ACH-000550
IGR39_SKIN	NRIP1--AF127936.7	9	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.57	1	0.1018	0.0905	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	IGR39_SKIN	0.57	1	0.1923	FALSE	164	806	69	479	0	FALSE	ACH-000550
IGR39_SKIN	RP11-403B2.7--RP11-403B2.6	7	15	RP11-403B2.7	1254	chr15:20961259:-	RP11-403B2.6	7754	chr15:20965236:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.0792	0.1697	GTEx_FI:{Brain=[count:17=pct:2.6],Esophagus=[count:15=pct:3.7],Blood_Vessel=[count:8=pct:2.2],Skin=[count:7=pct:2.2],Thyroid=[count:5=pct:2.8],Prostate=[count:4=pct:6.6],Lung=[count:4=pct:2.4],Heart=[count:3=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Blood=[count:2=pct:1.1],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},LOCAL_REARRANGEMENT:-:[3128],RP11-403B2.7->chr15:20935076-20961512:-,RP11-403B2.6->chr15:20964640-20980123:-	IGR39_SKIN	0.96	1	0.2489	TRUE	22	66	5	11	0	FALSE	ACH-000550
IGR39_SKIN	MT-ND6--MT-TE	9	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1018	0.0226	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR39_SKIN	1	1	0.1244	FALSE	499	1288	110	792	0	FALSE	ACH-000550
IGR39_SKIN	SSH2--STK11	3	26	SSH2	5062	chr17:28175867:-	STK11	39246	chr19:1216267:+	ONLY_REF_SPLICE	YES	6	65	0.83	0.31	0.0339	0.2941	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	IGR39_SKIN	0.31	0.83	0.328	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	MT-ATP6--MT-CO2	9	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	14	0	0.42	1	0.1018	0.0113	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR39_SKIN	0.42	1	0.1131	FALSE	59	21	0	114	0	FALSE	ACH-000550
IGR39_SKIN	RP11-254I22.1--CTD-2337A12.1	9	1	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1018	0.0113	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	IGR39_SKIN	1	1	0.1131	TRUE	4	2	0	28	0	FALSE	ACH-000550
IGR39_SKIN	MT-ATP6--MT-CO2	7	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	23	0	0.34	1	0.0792	0.0566	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR39_SKIN	0.34	1	0.1358	FALSE	59	21	0	114	0	FALSE	ACH-000550
IGR39_SKIN	MT-ND6--MT-TE	7	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0792	0.0566	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR39_SKIN	1	1	0.1358	FALSE	499	1288	110	792	0	FALSE	ACH-000550
IGR39_SKIN	C15orf57--CBX3	7	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	55	13	0.15	0.43	0.0792	0.0339	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	IGR39_SKIN	0.15	0.43	0.1131	TRUE	267	562	48	632	0	FALSE	ACH-000550
IGR39_SKIN	RP11-254I22.1--CTD-2337A12.1	7	2	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0792	0.0226	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	IGR39_SKIN	0.9	1	0.1018	TRUE	6	15	3	35	0	FALSE	ACH-000550
IGR39_SKIN	MT-ATP6--MT-CO2	6	2	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	18	0	0.31	1	0.0679	0.0226	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR39_SKIN	0.31	1	0.0905	FALSE	59	21	0	114	0	FALSE	ACH-000550
IGR39_SKIN	MT-ND4--MT-ATP8	6	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	8126	4	0	0.67	0.0679	0.0226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR39_SKIN	0	0.67	0.0905	FALSE	230	193	14	283	0	FALSE	ACH-000550
IGR39_SKIN	AP000350.4--PKM	6	1	AP000350.4	3774	chr22:24236611:-	PKM	7428	chr15:72523509:-	INCL_NON_REF_SPLICE	YES	0	5	1	0.58	0.0679	0.0113	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	IGR39_SKIN	0.58	1	0.0792	TRUE	0	0	0	14	0	TRUE	ACH-000550
IGR39_SKIN	MT-ND6--MT-TE	4	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0.1018	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR39_SKIN	1	1	0.147	FALSE	499	1288	110	792	0	FALSE	ACH-000550
IGR39_SKIN	MT-ND4--MT-ATP8	3	12	MT-ND4	2240	chrM:11999:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	2261	0	0.01	1	0.0339	0.1357	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR39_SKIN	0.01	1	0.1696	FALSE	216	209	16	281	0	FALSE	ACH-000550
IGR39_SKIN	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0679	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	IGR39_SKIN	1	1	0.0679	TRUE	465	1949	224	605	0	FALSE	ACH-000550
IGR39_SKIN	PRR16--CTD-2334D19.1	5	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	61	0	0.12	1	0.0566	0.0339	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	IGR39_SKIN	0.12	1	0.0905	FALSE	56	216	12	147	0	FALSE	ACH-000550
IGR39_SKIN	MT-ATP6--MT-CO2	4	6	MT-ATP6	1170	chrM:8696:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	25	0	0.29	1	0.0452	0.0679	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR39_SKIN	0.29	1	0.1131	FALSE	59	21	0	114	0	FALSE	ACH-000550
IGR39_SKIN	MT-ATP6--MT-CO2	4	6	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	23	0	0.3	1	0.0452	0.0679	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR39_SKIN	0.3	1	0.1131	FALSE	59	21	0	114	0	FALSE	ACH-000550
IGR39_SKIN	MT-ND4--MT-ATP8	4	6	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9887	47	0	0.18	0.0452	0.0679	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR39_SKIN	0	0.18	0.1131	FALSE	231	217	16	283	0	FALSE	ACH-000550
IGR39_SKIN	MT-ND4--MT-ATP8	5	2	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	8426	1776	0	0	0.0566	0.0226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR39_SKIN	0	0	0.0792	FALSE	231	204	14	283	0	FALSE	ACH-000550
IGR39_SKIN	SSH2--STK11	2	14	SSH2	1339	chr17:28256956:-	STK11	39246	chr19:1216267:+	ONLY_REF_SPLICE	YES	53	65	0.23	0.2	0.0226	0.1583	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	IGR39_SKIN	0.2	0.23	0.1809	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	MT-ND6--MT-TE	3	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0.1018	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR39_SKIN	1	1	0.1357	FALSE	499	1288	110	792	0	FALSE	ACH-000550
IGR39_SKIN	RP11-680G10.1--GSE1	5	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.67	0.0566	0.0113	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	IGR39_SKIN	0.67	1	0.0679	TRUE	458	1351	185	561	0	FALSE	ACH-000550
IGR39_SKIN	RPSAP52--HMGA2	5	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	8	195	0.43	0.03	0.0566	0.0113	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	IGR39_SKIN	0.03	0.43	0.0679	FALSE	0	59	0	125	0	FALSE	ACH-000550
IGR39_SKIN	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0566	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR39_SKIN	1	1	0.0566	FALSE	499	1288	110	792	0	FALSE	ACH-000550
IGR39_SKIN	RP11-444D3.1--SOX5	4	4	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0452	0.0452	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	IGR39_SKIN	1	1	0.0904	TRUE	274	363	69	150	0	FALSE	ACH-000550
IGR39_SKIN	MT-ND4--MT-ATP8	4	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9566	6	0	0.54	0.0452	0.0339	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR39_SKIN	0	0.54	0.0791	FALSE	231	217	16	283	0	FALSE	ACH-000550
IGR39_SKIN	MT-ATP6--MT-CO2	4	2	MT-ATP6	1142	chrM:8668:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	22	3	0.21	0.67	0.0452	0.0226	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR39_SKIN	0.21	0.67	0.0678	FALSE	59	21	0	114	0	FALSE	ACH-000550
IGR39_SKIN	MT-ND4--MT-ATP8	4	2	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	4641	0	0	1	0.0452	0.0226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR39_SKIN	0	1	0.0678	FALSE	230	193	14	283	0	FALSE	ACH-000550
IGR39_SKIN	MT-ND4--MT-ATP8	4	2	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8038	6	0	0.5	0.0452	0.0226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR39_SKIN	0	0.5	0.0678	FALSE	230	193	14	283	0	FALSE	ACH-000550
IGR39_SKIN	MT-ND4--MT-ATP8	4	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8168	47	0	0.11	0.0452	0.0226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR39_SKIN	0	0.11	0.0678	FALSE	230	198	14	283	0	FALSE	ACH-000550
IGR39_SKIN	MT-ND4--MT-ATP8	3	6	MT-ND4	1998	chrM:11757:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10313	6	0	0.6	0.0339	0.0679	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR39_SKIN	0	0.6	0.1018	FALSE	231	217	16	283	0	FALSE	ACH-000550
IGR39_SKIN	MT-ATP6--MT-CO2	4	1	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	13	0	0.28	1	0.0452	0.0113	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR39_SKIN	0.28	1	0.0565	FALSE	59	21	0	114	0	FALSE	ACH-000550
IGR39_SKIN	MT-ATP6--MT-CO2	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	13	0	0.28	1	0.0452	0.0113	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR39_SKIN	0.28	1	0.0565	FALSE	59	21	0	114	0	FALSE	ACH-000550
IGR39_SKIN	RP11-123O10.4--GRIP1	4	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0452	0.0113	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	IGR39_SKIN	1	1	0.0565	FALSE	416	2512	207	587	0	FALSE	ACH-000550
IGR39_SKIN	CDH13--RP11-22H5.2	4	0	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0452	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	IGR39_SKIN	1	1	0.0452	FALSE	14	31	0	36	0	FALSE	ACH-000550
IGR39_SKIN	MT-ATP6--MT-CO2	3	4	MT-ATP6	1138	chrM:8664:+	MT-CO2	4988	chrM:7892:+	INCL_NON_REF_SPLICE	YES	22	3	0.24	0.7	0.0339	0.0452	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR39_SKIN	0.24	0.7	0.0791	FALSE	59	21	0	114	0	FALSE	ACH-000550
IGR39_SKIN	MT-ND4--MT-ATP8	3	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9219	47	0	0.13	0.0339	0.0452	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR39_SKIN	0	0.13	0.0791	FALSE	231	217	16	283	0	FALSE	ACH-000550
IGR39_SKIN	RP11-476K15.1--CTD-2015H3.2	4	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	IGR39_SKIN	1	1	0.0452	FALSE	0	46	0	73	0	FALSE	ACH-000550
IGR39_SKIN	C15orf57--CBX3	3	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	55	14	0.1	0.3	0.0339	0.0339	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	IGR39_SKIN	0.1	0.3	0.0678	TRUE	267	562	48	632	0	FALSE	ACH-000550
IGR39_SKIN	CTB-113P19.1--FTL	3	3	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0339	0.0339	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	IGR39_SKIN	0.86	1	0.0678	TRUE	0	2	0	13	2	TRUE	ACH-000550
IGR39_SKIN	MT-ND4--MT-ATP8	3	2	MT-ND4	1294	chrM:11053:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	10030	2	0	0.71	0.0339	0.0226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR39_SKIN	0	0.71	0.0565	FALSE	231	205	14	283	0	FALSE	ACH-000550
IGR39_SKIN	MT-ND4--MT-ATP8	3	2	MT-ND4	1195	chrM:10954:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7568	47	0	0.1	0.0339	0.0226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR39_SKIN	0	0.1	0.0565	FALSE	230	193	14	283	0	FALSE	ACH-000550
IGR39_SKIN	MT-ND4--MT-ATP8	3	2	MT-ND4	1112	chrM:10871:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	4910	0	0	1	0.0339	0.0226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR39_SKIN	0	1	0.0565	FALSE	230	193	14	283	0	FALSE	ACH-000550
IGR39_SKIN	AP000350.4--PKM	3	1	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	5	1	0.44	0.0339	0.0113	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	IGR39_SKIN	0.44	1	0.0452	TRUE	0	0	0	14	0	TRUE	ACH-000550
IGR39_SKIN	TIMM23B--LINC00843	3	1	TIMM23B	1257	chr10:51371646:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	252	0	0.02	1	0.0339	0.0113	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	IGR39_SKIN	0.02	1	0.0452	TRUE	0	0	0	10	0	FALSE	ACH-000550
IGR39_SKIN	ALDOA--EEF2	3	0	ALDOA	7433	chr16:30077205:+	EEF2	15013	chr19:3985461:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.05%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	IGR39_SKIN	1	1	0.0339	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	ALDOA--RPS28	3	0	ALDOA	7439	chr16:30077211:+	RPS28	15370	chr19:8386405:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	IGR39_SKIN	1	1	0.0339	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	ALDOA--RPS28	3	0	ALDOA	7412	chr16:30077184:+	RPS28	15347	chr19:8386382:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	IGR39_SKIN	1	1	0.0339	TRUE	0	0	0	2	0	TRUE	ACH-000550
IGR39_SKIN	RP11-254I22.1--CTD-2337A12.1	3	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	IGR39_SKIN	1	1	0.0339	TRUE	0	2	1	13	0	FALSE	ACH-000550
IGR39_SKIN	RP11-96H19.1--RP11-446N19.1	3	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	IGR39_SKIN	1	1	0.0339	FALSE	515	4851	409	746	0	FALSE	ACH-000550
IGR39_SKIN	VIM--LDHA	3	0	VIM	2134	chr10:17271391:+	LDHA	12434	chr11:18416164:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	GTEx&tcga_normals:1/3694=0.03%,VIM->chr10:17270258-17279592:+,vimentin,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	IGR39_SKIN	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000550
IGR39_SKIN	VIM--RPS28	3	0	VIM	2106	chr10:17271363:+	RPS28	12544	chr19:8386381:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	VIM->chr10:17270258-17279592:+,vimentin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	IGR39_SKIN	1	1	0.0339	TRUE	0	0	0	4	0	TRUE	ACH-000550
IGR39_SKIN	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	52	0.67	0.07	0.0226	0.0226	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	IGR39_SKIN	0.07	0.67	0.0452	FALSE	16	356	14	466	0	FALSE	ACH-000550
IGR39_SKIN	RP11-254I22.1--CTD-2337A12.1	2	2	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	7741	chr5:95644428:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0226	0.0226	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	IGR39_SKIN	0.8	1	0.0452	TRUE	1	1	0	7	1	FALSE	ACH-000550
IGR39_SKIN	EPB41L2--PTPRK	2	0	EPB41L2	1168	chr6:131384295:-	PTPRK	58624	chr6:128411137:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	EPB41L2->chr6:131160487-131384462:-,erythrocyte_membrane_protein_band_4.1_like_2,PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K	IGR39_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000550
IGR39_SKIN	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	IGR39_SKIN	1	1	0.0226	TRUE	0	0	0	11	0	TRUE	ACH-000550
IGR39_SKIN	MRPS35--SPECC1	2	0	MRPS35	1183	chr12:27863888:+	SPECC1	32930	chr17:20140173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MRPS35->chr12:27863706-27909228:+,mitochondrial_ribosomal_protein_S35,SPECC1->Oncogene{Bushman},chr17:19912657-20222339:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1	IGR39_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000550
IGR39_SKIN	SLC16A7--ZNF567	2	0	SLC16A7	1170	chr12:59990017:+	ZNF567	31650	chr19:37203288:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	SLC16A7->chr12:59989848-60176395:+,solute_carrier_family_16_member_7,ZNF567->chr19:37178514-37218603:+,zinc_finger_protein_567	IGR39_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000550
IGR39_SKIN	TBL1X--WWC3	2	0	TBL1X	3678	chrX:9469889:+	WWC3	35204	chrX:10058811:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	TBL1X->chrX:9431335-9687780:+,transducin_(beta)-like_1X-linked,WWC3->WWC_family_member_3,chrX:9983602-10112518:+	IGR39_SKIN	1	1	0.0226	TRUE	0	1	0	1	1	TRUE	ACH-000550
IGR39_SKIN	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	IGR39_SKIN	1	1	0.0226	TRUE	5	8	0	33	0	FALSE	ACH-000550
IGR39_SKIN	TIMM23B--AGAP6	2	0	TIMM23B	6950	chr10:51387763:+	AGAP6	10946	chr10:51749068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,AGAP6->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_6,chr10:51748078-51770259:+	IGR39_SKIN	1	1	0.0226	TRUE	2	1	1	8	0	FALSE	ACH-000550
IGR39_SKIN	USPL1--SLC7A1	2	0	USPL1	1364	chr13:31192193:+	SLC7A1	17770	chr13:30127997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	USPL1->chr13:31191830-31233686:+,ubiquitin_specific_peptidase_like_1,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	IGR39_SKIN	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000550
IGR39_SKIN	CTD-2337A12.1--CAST	1	3	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	NO	0	215	1	0.02	0.0113	0.0339	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	IGR39_SKIN	0.02	1	0.0452	TRUE	15	36	8	26	0	FALSE	ACH-000550
IGR39_SKIN	ANXA2--B2M	1	1	ANXA2	15528	chr15:60674541:-	B2M	34954	chr15:45007621:+	ONLY_REF_SPLICE	YES	3019	160	0	0.01	0.0113	0.0113	ANXA2->annexin_A2,chr15:60639333-60695082:-,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	IGR39_SKIN	0	0.01	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000550
IGR39_SKIN	FAM101A--RP11-114H23.1	1	1	FAM101A	6449	chr12:124780182:+	RP11-114H23.1	19448	chr12:76025094:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0113	0.0113	FAM101A->chr12:124457788-124800570:+,family_with_sequence_similarity_101_member_A,RP11-114H23.1->chr12:75956982-76377795:-	IGR39_SKIN	0.4	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000550
IGR39_SKIN	FAM172A--NR2F1-AS1	1	1	FAM172A	12880	chr5:93111865:-	NR2F1-AS1	35101	chr5:92774447:-	ONLY_REF_SPLICE	NO	16	79	0.11	0.02	0.0113	0.0113	NEIGHBORS[32421],FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-	IGR39_SKIN	0.02	0.11	0.0226	FALSE	0	1	0	1	0	FALSE	ACH-000550
IGR39_SKIN	PDHX--CD44	1	1	PDHX	1987	chr11:34938362:+	CD44	37425	chr11:35236399:+	ONLY_REF_SPLICE	YES	70	1577	0.03	0	0.0113	0.0113	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	IGR39_SKIN	0	0.03	0.0226	FALSE	0	1	0	9	0	FALSE	ACH-000550
IGR39_SKIN	RB1--ITM2B	1	1	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	34	391	0.06	0.01	0.0113	0.0113	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	IGR39_SKIN	0.01	0.06	0.0226	FALSE	53	73	8	19	0	FALSE	ACH-000550
IGR39_SKIN	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0113	0.0113	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	IGR39_SKIN	1	1	0.0226	FALSE	93	270	15	244	0	FALSE	ACH-000550
IGR39_SKIN	RP11-476K15.1--CTD-2015H3.2	1	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0113	0.0113	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	IGR39_SKIN	0.67	1	0.0226	FALSE	0	46	0	73	0	FALSE	ACH-000550
IGR39_SKIN	SPRY4--NR3C1	1	1	SPRY4	2611	chr5:141704409:-	NR3C1	21668	chr5:142780417:-	ONLY_REF_SPLICE	YES	84	46	0.02	0.04	0.0113	0.0113	SPRY4->chr5:141689992-141706020:-,sprouty_RTK_signaling_antagonist_4,NR3C1->chr5:142657496-142815077:-,nuclear_receptor_subfamily_3_group_C_member_1	IGR39_SKIN	0.02	0.04	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000550
IGR39_SKIN	TANC1--POLR2D	1	1	TANC1	2259	chr2:159857701:+	POLR2D	41023	chr2:128610679:-	ONLY_REF_SPLICE	YES	44	37	0.04	0.05	0.0113	0.0113	TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,POLR2D->chr2:128603840-128615731:-,polymerase_(RNA)_II_subunit_D	IGR39_SKIN	0.04	0.05	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000550
IGR39_SKIN	TXNRD1--CHST11	1	1	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	YES	480	7	0	0.22	0.0113	0.0113	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	IGR39_SKIN	0	0.22	0.0226	FALSE	0	2	1	13	2	FALSE	ACH-000550
IGR39_SKIN	ZNF207--C17orf75	1	1	ZNF207	10711	chr17:30695033:+	C17orf75	32123	chr17:30665370:-	ONLY_REF_SPLICE	YES	394	40	0.01	0.05	0.0113	0.0113	LOCAL_INVERSION:+:-:[94],ZNF207->chr17:30677136-30708905:+,zinc_finger_protein_207,C17orf75->chr17:30651584-30677042:-,chromosome_17_open_reading_frame_75	IGR39_SKIN	0.01	0.05	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000550
RERFLCKJ_LUNG	TIMM23B--LINC00843	151	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.3076	0.2771	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RERFLCKJ_LUNG	0.99	1	1.5847	TRUE	508	994	45	981	0	FALSE	ACH-000482
RERFLCKJ_LUNG	PTOV1--CPT1C	90	41	PTOV1	5860	chr19:50359560:+	CPT1C	28268	chr19:50216814:+	INCL_NON_REF_SPLICE	YES	229	0	0.36	1	0.7794	0.355	PTOV1->chr19:50353992-50364001:+,prostate_tumor_overexpressed_1,CPT1C->carnitine_palmitoyltransferase_1C,chr19:50194155-50216988:+	RERFLCKJ_LUNG	0.36	1	1.1344	TRUE	0	0	0	1	0	TRUE	ACH-000482
RERFLCKJ_LUNG	TIMM23--RP11-464F9.1	99	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	210	11	0.32	0.9	0.8573	0.0087	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RERFLCKJ_LUNG	0.32	0.9	0.866	TRUE	519	3926	326	965	0	FALSE	ACH-000482
RERFLCKJ_LUNG	OR51S1--TP53I11	69	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5975	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	RERFLCKJ_LUNG	1	1	0.5975	TRUE	402	216	10	229	0	FALSE	ACH-000482
RERFLCKJ_LUNG	RP11-479O16.1--MSMO1	24	0	RP11-479O16.1	5346	chr5:58037747:-	MSMO1	15454	chr4:166263475:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2078	0	RP11-479O16.1->chr5:58037408-58112926:-,MSMO1->chr4:166248775-166264312:+,methylsterol_monooxygenase_1	RERFLCKJ_LUNG	1	1	0.2078	TRUE	0	0	0	5	0	TRUE	ACH-000482
RERFLCKJ_LUNG	MT-TA--MT-TC	21	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1818	0.052	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCKJ_LUNG	1	1	0.2338	FALSE	462	80	0	856	0	FALSE	ACH-000482
RERFLCKJ_LUNG	ZRANB2-AS2--DPYD	20	9	ZRANB2-AS2	11729	chr1:71702878:+	DPYD	55600	chr1:97915779:-	ONLY_REF_SPLICE	YES	11	16	0.72	0.64	0.1732	0.0779	ZRANB2-AS2->ZRANB2_antisense_RNA_2_(head_to_head),chr1:71547007-71955652:+,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	RERFLCKJ_LUNG	0.64	0.72	0.2511	TRUE	0	0	0	1	0	TRUE	ACH-000482
RERFLCKJ_LUNG	PTOV1--CPT1C	21	4	PTOV1	4634	chr19:50358334:+	CPT1C	28330	chr19:50216876:+	INCL_NON_REF_SPLICE	YES	266	0	0.09	1	0.1818	0.0346	PTOV1->chr19:50353992-50364001:+,prostate_tumor_overexpressed_1,CPT1C->carnitine_palmitoyltransferase_1C,chr19:50194155-50216988:+	RERFLCKJ_LUNG	0.09	1	0.2164	TRUE	0	0	0	1	0	TRUE	ACH-000482
RERFLCKJ_LUNG	SAMD5--SASH1	15	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1299	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	RERFLCKJ_LUNG	1	1	0.1299	TRUE	53	396	64	110	0	FALSE	ACH-000482
RERFLCKJ_LUNG	RP11-114H23.1--RP11-114H23.2	12	5	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1039	0.0433	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	RERFLCKJ_LUNG	0.94	1	0.1472	FALSE	81	155	12	160	0	FALSE	ACH-000482
RERFLCKJ_LUNG	PTOV1--CPT1C	12	4	PTOV1	4634	chr19:50358334:+	CPT1C	28327	chr19:50216873:+	ONLY_REF_SPLICE	YES	266	0	0.06	1	0.1039	0.0346	PTOV1->chr19:50353992-50364001:+,prostate_tumor_overexpressed_1,CPT1C->carnitine_palmitoyltransferase_1C,chr19:50194155-50216988:+	RERFLCKJ_LUNG	0.06	1	0.1385	TRUE	0	0	0	1	0	TRUE	ACH-000482
RERFLCKJ_LUNG	NRIP1--AF127936.7	12	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.82	1	0.1039	0.0173	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFLCKJ_LUNG	0.82	1	0.1212	FALSE	292	1546	117	613	0	FALSE	ACH-000482
RERFLCKJ_LUNG	C15orf57--CBX3	10	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	28	28	0.38	0.38	0.0866	0.0606	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RERFLCKJ_LUNG	0.38	0.38	0.1472	TRUE	267	562	48	632	0	FALSE	ACH-000482
RERFLCKJ_LUNG	NRIP1--AF127936.7	9	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.46	1	0.0779	0.026	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFLCKJ_LUNG	0.46	1	0.1039	FALSE	125	705	46	456	0	FALSE	ACH-000482
RERFLCKJ_LUNG	RP11-96H19.1--RP11-446N19.1	9	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	4	0.92	0.75	0.0779	0.026	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCKJ_LUNG	0.75	0.92	0.1039	FALSE	515	4851	409	746	0	FALSE	ACH-000482
RERFLCKJ_LUNG	MT-TA--MT-TC	6	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0.0606	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCKJ_LUNG	1	1	0.1126	FALSE	462	80	0	856	0	FALSE	ACH-000482
RERFLCKJ_LUNG	RP11-736K20.6--TMEM135	6	1	RP11-736K20.6	2687	chr11:86669068:+	TMEM135	9115	chr11:86778736:+	ONLY_REF_SPLICE	YES	2	56	0.78	0.11	0.052	0.0087	NEIGHBORS[36885],RP11-736K20.6->chr11:86666661-86712001:+,TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135	RERFLCKJ_LUNG	0.11	0.78	0.0607	FALSE	0	2	0	1	0	FALSE	ACH-000482
RERFLCKJ_LUNG	AEBP2--RP11-405A12.2	6	0	AEBP2	15624	chr12:19873625:+	RP11-405A12.2	19888	chr12:20076132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0	NEIGHBORS[54650],AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,RP11-405A12.2->chr12:19928385-20162871:+	RERFLCKJ_LUNG	1	1	0.052	FALSE	0	0	0	8	0	FALSE	ACH-000482
RERFLCKJ_LUNG	C15orf57--CBX3	5	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	26	29	0.26	0.24	0.0433	0.0346	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RERFLCKJ_LUNG	0.24	0.26	0.0779	TRUE	267	562	48	632	0	FALSE	ACH-000482
RERFLCKJ_LUNG	LY6E--S100A6	5	0	LY6E	4687	chr8:144103227:+	S100A6	9963	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	RERFLCKJ_LUNG	1	1	0.0433	TRUE	0	0	0	7	0	TRUE	ACH-000482
RERFLCKJ_LUNG	ZRANB2-AS2--DPYD	3	8	ZRANB2-AS2	10663	chr1:71688797:+	DPYD	55600	chr1:97915779:-	ONLY_REF_SPLICE	YES	8	16	0.58	0.41	0.026	0.0693	ZRANB2-AS2->ZRANB2_antisense_RNA_2_(head_to_head),chr1:71547007-71955652:+,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	RERFLCKJ_LUNG	0.41	0.58	0.0953	TRUE	0	0	0	1	0	TRUE	ACH-000482
RERFLCKJ_LUNG	BRD9--RP11-43F13.4	4	3	BRD9	10325	chr5:881986:-	RP11-43F13.4	27565	chr5:1005737:+	INCL_NON_REF_SPLICE	YES	161	4	0.04	0.64	0.0346	0.026	BRD9->bromodomain_containing_9,chr5:850406-892939:-,RP11-43F13.4->chr5:1005154-1006738:+	RERFLCKJ_LUNG	0.04	0.64	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000482
RERFLCKJ_LUNG	PLXDC1--TAF13	4	1	PLXDC1	27520	chr17:37222840:-	TAF13	38540	chr1:109605627:-	INCL_NON_REF_SPLICE	YES	0	198	1	0.02	0.0346	0.0087	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	RERFLCKJ_LUNG	0.02	1	0.0433	TRUE	7	10	0	216	0	FALSE	ACH-000482
RERFLCKJ_LUNG	RP11-114H23.1--RP11-114H23.2	3	5	RP11-114H23.1	1242	chr12:76377554:-	RP11-114H23.2	12403	chr12:76088755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0.0433	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	RERFLCKJ_LUNG	1	1	0.0693	FALSE	81	155	12	160	0	FALSE	ACH-000482
RERFLCKJ_LUNG	CALM3--MT-ATP8	4	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCKJ_LUNG	1	1	0.0346	FALSE	12	0	0	26	0	FALSE	ACH-000482
RERFLCKJ_LUNG	NRIP1--AF127936.7	3	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.25	1	0.026	0.026	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFLCKJ_LUNG	0.25	1	0.052	FALSE	164	806	69	479	0	FALSE	ACH-000482
RERFLCKJ_LUNG	DNAJC25--UGCG	3	1	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	92	29	0.04	0.12	0.026	0.0087	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	RERFLCKJ_LUNG	0.04	0.12	0.0347	TRUE	50	73	10	50	0	FALSE	ACH-000482
RERFLCKJ_LUNG	MSL1--IGFBP4	3	1	MSL1	2083	chr17:38279633:+	IGFBP4	18227	chr17:38609237:+	ONLY_REF_SPLICE	YES	133	340	0.03	0.01	0.026	0.0087	MSL1->chr17:38278551-38293042:+,male_specific_lethal_1_homolog,IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4	RERFLCKJ_LUNG	0.01	0.03	0.0347	FALSE	0	0	0	1	0	FALSE	ACH-000482
RERFLCKJ_LUNG	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0173	0.0346	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCKJ_LUNG	0.86	1	0.0519	FALSE	407	2205	196	549	0	FALSE	ACH-000482
RERFLCKJ_LUNG	BCAS3--APPBP2	2	2	BCAS3	7454	chr17:58786686:+	APPBP2	60955	chr17:58577848:-	ONLY_REF_SPLICE	YES	13	54	0.24	0.07	0.0173	0.0173	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-	RERFLCKJ_LUNG	0.07	0.24	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000482
RERFLCKJ_LUNG	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0087	0.0433	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCKJ_LUNG	1	1	0.052	FALSE	192	492	57	212	0	FALSE	ACH-000482
RERFLCKJ_LUNG	SEMA3C--AC010091.1	2	1	SEMA3C	4287	chr7:80545995:-	AC010091.1	37456	chr7:81236959:-	ONLY_REF_SPLICE	YES	158	0	0.02	1	0.0173	0.0087	SEMA3C->chr7:80371854-80551675:-,semaphorin_3C,AC010091.1->chr7:81205702-81255532:-	RERFLCKJ_LUNG	0.02	1	0.026	TRUE	0	0	0	1	0	FALSE	ACH-000482
RERFLCKJ_LUNG	NDUFA4--PHF14	2	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	RERFLCKJ_LUNG	1	1	0.0173	TRUE	19	32	3	60	0	FALSE	ACH-000482
RERFLCKJ_LUNG	NMT1--MRPS15	2	0	NMT1	2262	chr17:43138828:+	MRPS15	27608	chr1:36923582:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	NMT1->N-myristoyltransferase_1,Oncogene{Bushman},chr17:43128978-43186384:+,MRPS15->chr1:36921319-36930038:-,mitochondrial_ribosomal_protein_S15	RERFLCKJ_LUNG	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000482
RERFLCKJ_LUNG	CMTM8--CMTM7	1	2	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	NO	41	2	0.07	0.6	0.0087	0.0173	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	RERFLCKJ_LUNG	0.07	0.6	0.026	FALSE	118	557	29	88	0	FALSE	ACH-000482
RERFLCKJ_LUNG	ZRANB2-AS2--DPYD	1	2	ZRANB2-AS2	2131	chr1:71557387:+	DPYD	55600	chr1:97915779:-	ONLY_REF_SPLICE	NO	0	16	1	0.16	0.0087	0.0173	ZRANB2-AS2->ZRANB2_antisense_RNA_2_(head_to_head),chr1:71547007-71955652:+,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	RERFLCKJ_LUNG	0.16	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000482
RERFLCKJ_LUNG	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	99	1	0.02	0.0087	0.0087	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	RERFLCKJ_LUNG	0.02	1	0.0174	TRUE	347	1186	183	220	0	FALSE	ACH-000482
RERFLCKJ_LUNG	RP11-736K20.6--TMEM135	1	1	RP11-736K20.6	2687	chr11:86669068:+	TMEM135	10249	chr11:86782565:+	ONLY_REF_SPLICE	YES	2	44	0.5	0.04	0.0087	0.0087	NEIGHBORS[36885],RP11-736K20.6->chr11:86666661-86712001:+,TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135	RERFLCKJ_LUNG	0.04	0.5	0.0174	FALSE	0	1	0	1	0	FALSE	ACH-000482
RERFLCKJ_LUNG	RP11-736K20.6--TMEM135	1	1	RP11-736K20.6	2687	chr11:86669068:+	TMEM135	15789	chr11:86947680:+	ONLY_REF_SPLICE	YES	2	60	0.5	0.03	0.0087	0.0087	NEIGHBORS[36885],RP11-736K20.6->chr11:86666661-86712001:+,TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135	RERFLCKJ_LUNG	0.03	0.5	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000482
COV434_OVARY	TIMM23B--LINC00843	97	44	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0202	0.4628	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COV434_OVARY	1	1	1.483	TRUE	508	994	45	981	0	FALSE	ACH-000123
COV434_OVARY	TIMM23--RP11-464F9.1	53	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	347	3	0.15	0.95	0.5574	0.0736	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	COV434_OVARY	0.15	0.95	0.631	TRUE	519	3926	326	965	0	FALSE	ACH-000123
COV434_OVARY	MT-TA--MT-TC	49	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5154	0.0841	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COV434_OVARY	1	1	0.5995	FALSE	462	80	0	856	0	FALSE	ACH-000123
COV434_OVARY	MT-ND6--MT-TE	32	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3366	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV434_OVARY	1	1	0.3366	FALSE	499	1288	110	792	0	FALSE	ACH-000123
COV434_OVARY	MT-ND6--MT-TE	23	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.2419	0.0841	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV434_OVARY	0.94	1	0.326	FALSE	499	1288	110	792	0	FALSE	ACH-000123
COV434_OVARY	MT-TA--MT-TC	20	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2103	0.0841	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COV434_OVARY	1	1	0.2944	FALSE	462	80	0	856	0	FALSE	ACH-000123
COV434_OVARY	RP11-275N1.1--NEBL	20	8	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	19	84	0.6	0.25	0.2103	0.0841	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	COV434_OVARY	0.25	0.6	0.2944	TRUE	0	2	0	25	2	FALSE	ACH-000123
COV434_OVARY	C15orf57--CBX3	13	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	62	35	0.27	0.4	0.1367	0.1052	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COV434_OVARY	0.27	0.4	0.2419	TRUE	267	562	48	632	0	FALSE	ACH-000123
COV434_OVARY	MT-ND6--MT-TE	14	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1472	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV434_OVARY	1	1	0.1472	FALSE	499	1288	110	792	0	FALSE	ACH-000123
COV434_OVARY	RAP1B--AC068535.4	13	0	RAP1B	15072	chr12:69053773:+	AC068535.4	19991	chr2:105121504:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1367	0	RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+,AC068535.4->chr2:105104916-105126967:-	COV434_OVARY	1	1	0.1367	TRUE	0	0	0	4	0	TRUE	ACH-000123
COV434_OVARY	FAM9C--CHMP1A	8	6	FAM9C	6963	chrX:13056535:-	CHMP1A	17539	chr16:89713739:-	ONLY_REF_SPLICE	YES	1715	214	0.01	0.06	0.0841	0.0631	FAM9C->chrX:13053737-13062801:-,family_with_sequence_similarity_9_member_C,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	COV434_OVARY	0.01	0.06	0.1472	TRUE	1	0	0	1	0	FALSE	ACH-000123
COV434_OVARY	MT-ND6--MT-TE	7	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0736	0.0947	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV434_OVARY	0.89	1	0.1683	FALSE	499	1288	110	792	0	FALSE	ACH-000123
COV434_OVARY	TMSB10--TMSB4X	8	1	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	1136	10979	0.01	0	0.0841	0.0105	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	COV434_OVARY	0	0.01	0.0946	FALSE	0	1	0	17	1	FALSE	ACH-000123
COV434_OVARY	HSP90AB1--MT-RNR2	7	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3414	0	0	1	0.0736	0.0316	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COV434_OVARY	0	1	0.1052	FALSE	13	9	0	364	0	FALSE	ACH-000123
COV434_OVARY	HSP90AB1--MT-RNR2	7	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3433	0	0	1	0.0736	0.021	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COV434_OVARY	0	1	0.0946	FALSE	13	9	0	364	0	FALSE	ACH-000123
COV434_OVARY	RP11-6N13.1--CTD-2374C24.1	6	4	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0631	0.0421	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	COV434_OVARY	1	1	0.1052	TRUE	5	4	0	46	0	FALSE	ACH-000123
COV434_OVARY	MT-TA--MT-TC	4	11	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0.1157	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COV434_OVARY	1	1	0.1578	FALSE	462	80	0	856	0	FALSE	ACH-000123
COV434_OVARY	RP11-680G10.1--GSE1	6	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	59	1	0.12	0.0631	0.021	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COV434_OVARY	0.12	1	0.0841	TRUE	465	1949	224	605	0	FALSE	ACH-000123
COV434_OVARY	MT-ND6--MT-TE	4	9	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.0421	0.0947	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV434_OVARY	0.87	1	0.1368	FALSE	499	1288	110	792	0	FALSE	ACH-000123
COV434_OVARY	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COV434_OVARY	1	1	0.0526	FALSE	462	80	0	856	0	FALSE	ACH-000123
COV434_OVARY	MT-TA--MT-TC	3	8	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.0841	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COV434_OVARY	1	1	0.1157	FALSE	462	80	0	856	0	FALSE	ACH-000123
COV434_OVARY	PTMS--CRYAB	5	0	PTMS	4869	chr12:6879852:+	CRYAB	11266	chr11:111782461:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	PTMS->chr12:6874682-6880116:+,parathymosin,CRYAB->Oncogene{Bushman},chr11:111779289-111794446:-,crystallin_alpha_B	COV434_OVARY	1	1	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000123
COV434_OVARY	RP11-275N1.1--NEBL	5	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	COV434_OVARY	1	1	0.0526	TRUE	0	0	0	21	0	FALSE	ACH-000123
COV434_OVARY	MT-ND6--MT-TE	4	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0.0316	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV434_OVARY	1	1	0.0737	FALSE	499	1288	110	792	0	FALSE	ACH-000123
COV434_OVARY	RP11-123O10.4--GRIP1	4	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0421	0.021	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COV434_OVARY	0.86	1	0.0631	FALSE	416	2512	207	587	0	FALSE	ACH-000123
COV434_OVARY	AC018816.3--BHLHE40-AS1	4	0	AC018816.3	4695	chr3:4872631:-	BHLHE40-AS1	16348	chr3:4942382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:-:[9516],AC018816.3->chr3:4855978-4928977:-,BHLHE40-AS1->BHLHE40_antisense_RNA_1,chr3:4938493-5021646:-	COV434_OVARY	1	1	0.0421	TRUE	0	0	0	1	0	TRUE	ACH-000123
COV434_OVARY	MT-ND6--MT-TE	3	2	MT-ND6	1029	chrM:14645:-	MT-TE	4495	chrM:14773:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.021	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV434_OVARY	1	1	0.0526	FALSE	499	1288	110	792	0	FALSE	ACH-000123
COV434_OVARY	MT-ND6--MT-TE	3	2	MT-ND6	1049	chrM:14625:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.021	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV434_OVARY	1	1	0.0526	FALSE	499	1288	110	792	0	FALSE	ACH-000123
COV434_OVARY	ABCD2--KIF21A	3	0	ABCD2	10894	chr12:39967518:-	KIF21A	20458	chr12:39764063:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_FI:{Brain=[count:4=pct:0.6],Heart=[count:2=pct:0.8],Uterus=[count:2=pct:4.7],Adipose_Tissue=[count:2=pct:0.7]},ABCD2->ATP_binding_cassette_subfamily_D_member_2,chr12:39943835-40013553:-,KIF21A->chr12:39687030-39837192:-,kinesin_family_member_21A	COV434_OVARY	1	1	0.0316	TRUE	7	0	0	2	0	FALSE	ACH-000123
COV434_OVARY	BRI3BP--UBC	3	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	COV434_OVARY	1	1	0.0316	TRUE	5	99	5	34	0	FALSE	ACH-000123
COV434_OVARY	CALM3--MT-ATP8	3	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COV434_OVARY	1	1	0.0316	FALSE	12	0	0	26	0	FALSE	ACH-000123
COV434_OVARY	CASC10--DNM3OS	3	0	CASC10	1513	chr10:21785679:-	DNM3OS	8963	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	CASC10->cancer_susceptibility_candidate_10,chr10:21781587-21786191:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	COV434_OVARY	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000123
COV434_OVARY	LDB1--TPM2	3	0	LDB1	7405	chr10:103867798:-	TPM2	12084	chr9:35689820:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LDB1->LIM_domain_binding_1,Oncogene{Bushman},chr10:103867317-103880210:-,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	COV434_OVARY	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000123
COV434_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV434_OVARY	1	1	0.0316	FALSE	499	1288	110	792	0	FALSE	ACH-000123
COV434_OVARY	RP11-275N1.1--NEBL	1	8	RP11-275N1.1	3264	chr10:21657426:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	9	84	0.5	0.1	0.0105	0.0841	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	COV434_OVARY	0.1	0.5	0.0946	TRUE	0	0	0	3	0	TRUE	ACH-000123
COV434_OVARY	TXLNG--SYAP1	2	4	TXLNG	1163	chrX:16804712:+	SYAP1	23238	chrX:16773068:+	ONLY_REF_SPLICE	YES	51	404	0.11	0.01	0.021	0.0421	LOCAL_REARRANGEMENT:+:[21091],TXLNG->chrX:16804550-16862642:+,taxilin_gamma,SYAP1->chrX:16737755-16783459:+,synapse_associated_protein_1	COV434_OVARY	0.01	0.11	0.0631	FALSE	0	0	0	1	0	FALSE	ACH-000123
COV434_OVARY	YIPF6--BAZ1B	3	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	COV434_OVARY	1	1	0.0316	TRUE	1	23	1	24	8	FALSE	ACH-000123
COV434_OVARY	RP11-680G10.1--GSE1	2	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	34	1	0.11	0.021	0.021	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COV434_OVARY	0.11	1	0.042	TRUE	458	1351	185	561	0	FALSE	ACH-000123
COV434_OVARY	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.021	0.021	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COV434_OVARY	0.57	1	0.042	FALSE	407	2205	196	549	0	FALSE	ACH-000123
COV434_OVARY	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.021	0.021	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COV434_OVARY	0.57	1	0.042	FALSE	515	4851	409	746	0	FALSE	ACH-000123
COV434_OVARY	AC018816.3--BHLHE40-AS1	2	0	AC018816.3	3251	chr3:4898320:-	BHLHE40-AS1	16348	chr3:4942382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	LOCAL_REARRANGEMENT:-:[9516],AC018816.3->chr3:4855978-4928977:-,BHLHE40-AS1->BHLHE40_antisense_RNA_1,chr3:4938493-5021646:-	COV434_OVARY	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000123
COV434_OVARY	C8orf59--BLMH	2	0	C8orf59	4036	chr8:86129615:-	BLMH	17424	chr17:28599917:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	C8orf59->chr8:86126311-86132650:-,chromosome_8_open_reading_frame_59,BLMH->bleomycin_hydrolase,chr17:28575218-28619074:-	COV434_OVARY	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000123
COV434_OVARY	CXXC5--HAS3	2	0	CXXC5	2711	chr5:139028594:+	HAS3	18242	chr16:69143299:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	CXXC5->CXXC_finger_protein_5,chr5:139026884-139063467:+,HAS3->chr16:69139467-69152622:+,hyaluronan_synthase_3	COV434_OVARY	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000123
COV434_OVARY	ERC1--WNK1	2	0	ERC1	3448	chr12:1107648:+	WNK1	62275	chr12:987381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},LOCAL_REARRANGEMENT:+:[79057],ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+	COV434_OVARY	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000123
COV434_OVARY	TBL1XR1--ARHGEF26	2	0	TBL1XR1	1353	chr3:176914909:-	ARHGEF26	38497	chr3:153867178:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,ARHGEF26->Rho_guanine_nucleotide_exchange_factor_26,chr3:153838792-153975616:+	COV434_OVARY	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000123
COV434_OVARY	TULP4--RP11-732M18.3	1	2	TULP4	2609	chr6:158735300:+	RP11-732M18.3	28124	chr6:158703295:+	ONLY_REF_SPLICE	YES	13	0	0.19	1	0.0105	0.021	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	COV434_OVARY	0.19	1	0.0315	TRUE	121	131	5	12	0	FALSE	ACH-000123
COV434_OVARY	C19orf25--DAZAP1	1	1	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	65	204	0.03	0.01	0.0105	0.0105	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	COV434_OVARY	0.01	0.03	0.021	FALSE	6	7	1	24	0	FALSE	ACH-000123
COV434_OVARY	EIF3M--NUP98	1	1	EIF3M	2700	chr11:32608690:+	NUP98	24913	chr11:3789974:-	ONLY_REF_SPLICE	YES	3979	161	0	0.01	0.0105	0.0105	EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M,NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa	COV434_OVARY	0	0.01	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000123
COV434_OVARY	HGF--FUS	1	1	HGF	8284	chr7:81381436:-	FUS	36866	chr16:31199646:+	ONLY_REF_SPLICE	YES	4310	1026	0	0	0.0105	0.0105	HGF->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:81328322-81399754:-,hepatocyte_growth_factor,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	COV434_OVARY	0	0	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000123
COV434_OVARY	NELFA--WHSC1	1	1	NELFA	5759	chr4:2010477:-	WHSC1	28232	chr4:1902353:+	ONLY_REF_SPLICE	YES	177	33	0.01	0.06	0.0105	0.0105	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},LOCAL_INVERSION:-:+:[507],NELFA->chr4:1984441-2043630:-,negative_elongation_factor_complex_member_A,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	COV434_OVARY	0.01	0.06	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000123
COV434_OVARY	PDZRN4--CHMP1A	1	1	PDZRN4	3851	chr12:41587990:+	CHMP1A	25364	chr16:89713739:-	ONLY_REF_SPLICE	YES	265	214	0.01	0.01	0.0105	0.0105	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1},PDZRN4->PDZ_domain_containing_ring_finger_4,chr12:41582250-41968392:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	COV434_OVARY	0.01	0.01	0.021	FALSE	2	0	0	1	0	FALSE	ACH-000123
COV434_OVARY	TXLNG--SYAP1	1	1	TXLNG	1163	chrX:16804712:+	SYAP1	24886	chrX:16775285:+	ONLY_REF_SPLICE	NO	51	280	0.04	0.01	0.0105	0.0105	LOCAL_REARRANGEMENT:+:[21091],TXLNG->chrX:16804550-16862642:+,taxilin_gamma,SYAP1->chrX:16737755-16783459:+,synapse_associated_protein_1	COV434_OVARY	0.01	0.04	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000123
COV434_OVARY	ZNF217--PPP3CB	1	1	ZNF217	8536	chr20:52194873:-	PPP3CB	19644	chr10:75239726:-	ONLY_REF_SPLICE	NO	106	0	0.02	1	0.0105	0.0105	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,PPP3CB->chr10:75196186-75255782:-,protein_phosphatase_3_catalytic_subunit_beta	COV434_OVARY	0.02	1	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000123
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNIP1--RP11-876N24.4	109	30	TNIP1	9514	chr5:150441688:-	RP11-876N24.4	29633	chr16:11035043:+	ONLY_REF_SPLICE	YES	217	6	0.39	0.96	1.1561	0.3182	TNIP1->TNFAIP3_interacting_protein_1,chr5:150409506-150473138:-,RP11-876N24.4->chr16:11034576-11036878:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.96	1.4743	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-28--IGKJ4	68	4	IGKV2-28	1759	chr2:89521184:-	IGKJ4	4760	chr2:89160439:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7212	0.0424	GTEx_FI:{Adipose_Tissue=[count:4=pct:1.3],Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Fallopian_Tube=[count:1=pct:16.7]},HGNC_GENEFAM,IGKV2-28->chr2:89521179-89521942:-,immunoglobulin_kappa_variable_2-28,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7636	FALSE	15	107	3	2	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARID4B--BCL6	47	22	ARID4B	2306	chr1:235490229:-	BCL6	59056	chr3:187440389:-	ONLY_REF_SPLICE	YES	0	327	1	0.17	0.4985	0.2333	{Klijn_CCL:Lymphoid=1},ARID4B->AT-rich_interaction_domain_4B,chr1:235294949-235491534:-,BCL6->B-cell_CLL/lymphoma_6,Oncogene{Bushman},chr3:187439165-187463515:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.7318	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	28	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.297	0.1697	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4667	TRUE	508	994	45	981	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	27	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2864	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2864	TRUE	0	0	0	518	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CIITA--EBF1	25	4	CIITA	19822	chr16:11017182:+	EBF1	38727	chr5:158267118:-	ONLY_REF_SPLICE	YES	17	24	0.63	0.55	0.2652	0.0424	CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator,EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.63	0.3076	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	16	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1697	0.0318	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2015	FALSE	462	80	0	856	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	14	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1485	0.0106	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1591	FALSE	499	1288	110	792	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	13	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1379	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1379	TRUE	519	3926	326	965	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	10	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1061	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1061	FALSE	183	104	9	328	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.8	1	0.0848	0.0848	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.1696	FALSE	499	1288	110	792	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	8	6	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0848	0.0636	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1484	TRUE	0	1	0	84	1	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	8	1	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0848	0.0106	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.0954	TRUE	0	0	0	81	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	7	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0742	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0742	TRUE	0	0	0	434	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.053	0.0106	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0636	FALSE	499	1288	110	792	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RERE--GNB1	4	5	RERE	2669	chr1:8852463:-	GNB1	43064	chr1:1770677:-	ONLY_REF_SPLICE	YES	4	4	0.69	0.69	0.0424	0.053	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.69	0.0954	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	3	5	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0.053	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0848	TRUE	0	1	0	84	1	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RERE--GNB1	3	5	RERE	1484	chr1:8877219:-	GNB1	43064	chr1:1770677:-	ONLY_REF_SPLICE	YES	3	4	0.73	0.67	0.0318	0.053	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.73	0.0848	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	4	1	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0424	0.0106	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.053	TRUE	37	101	7	40	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL6--ARID4B	3	4	BCL6	13329	chr3:187442729:-	ARID4B	21356	chr1:235424067:-	ONLY_REF_SPLICE	YES	334	0	0.02	1	0.0318	0.0424	BCL6->B-cell_CLL/lymphoma_6,Oncogene{Bushman},chr3:187439165-187463515:-,ARID4B->AT-rich_interaction_domain_4B,chr1:235294949-235491534:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0742	TRUE	0	0	0	1	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-28--IGKJ4	3	4	IGKV2-28	1764	chr2:89521179:-	IGKJ4	4765	chr2:89160434:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0.0424	GTEx_FI:{Adipose_Tissue=[count:4=pct:1.3],Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Fallopian_Tube=[count:1=pct:16.7]},HGNC_GENEFAM,IGKV2-28->chr2:89521179-89521942:-,immunoglobulin_kappa_variable_2-28,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0742	FALSE	15	107	3	2	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0424	FALSE	183	104	9	328	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0424	FALSE	462	80	0	856	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP79--CTC-523E23.11	4	0	RPL23AP79	2311	chr19:59086955:+	CTC-523E23.11	17629	chr19:35340453:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0424	0	RPL23AP79->chr19:59084870-59111168:+,ribosomal_protein_L23a_pseudogene_79,CTC-523E23.11->chr19:35340182-35351480:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASH1L--ARHGEF18	3	0	ASH1L	3174	chr1:155490891:-	ARHGEF18	41355	chr19:7505230:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-,ARHGEF18->Rho/Rac_guanine_nucleotide_exchange_factor_18,chr19:7459999-7537363:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCKDHB--RP11-321N4.5	3	0	BCKDHB	13350	chr6:80982938:+	RP11-321N4.5	26885	chr6:86267778:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	BCKDHB->branched_chain_keto_acid_dehydrogenase_E1,_beta_polypeptide,chr6:80816364-81055987:+,RP11-321N4.5->chr6:86267696-86324952:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CREB1--TLK1	3	0	CREB1	1398	chr2:208394858:+	TLK1	37976	chr2:171917666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	CREB1->Oncogene{Bushman},cAMP_responsive_element_binding_protein_1,chr2:208394461-208468155:+,TLK1->chr2:171847333-172087824:-,tousled_like_kinase_1	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXO3--CLK2	3	0	FBXO3	1122	chr11:33795968:-	CLK2	32075	chr1:155238226:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	FBXO3->F-box_protein_3,chr11:33762485-33796089:-,CLK2->CDC_like_kinase_2,chr1:155232659-155248282:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GYPC--EEF1A1	3	0	GYPC	7407	chr2:127447866:+	EEF1A1	17719	chr6:74228493:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	GYPC->chr2:127413509-127454246:+,glycophorin_C_(Gerbich_blood_group),EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	TRUE	0	0	0	3	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	3	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	FALSE	1	11	0	34	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LSP1--MT-ATP6	3	0	LSP1	18269	chr11:1913152:+	MT-ATP6	21713	chrM:8625:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	LSP1->chr11:1874200-1913497:+,chr13:25591541-25591675:+,lymphocyte-specific_protein_1,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	FALSE	0	0	0	1	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	FALSE	182	97	9	327	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	FALSE	183	104	9	328	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--STYXL1	3	0	MT-ND1	1272	chrM:3578:+	STYXL1	9661	chr7:75643155:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,STYXL1->chr7:75625656-75677322:-,serine/threonine/tyrosine_interacting-like_1	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	FALSE	0	0	0	1	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1014	chrM:14660:-	MT-TE	4552	chrM:14716:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	FALSE	499	1288	110	792	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RERE--GNB1	1	8	RERE	5242	chr1:8763114:-	GNB1	43064	chr1:1770677:-	ONLY_REF_SPLICE	NO	4	4	0.69	0.69	0.0106	0.0848	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.69	0.0954	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	TRUE	22	156	2	142	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC15A3--FAM167A	3	0	SLC15A3	11398	chr11:60705389:-	FAM167A	24433	chr8:11280022:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	SLC15A3->chr11:60704556-60720002:-,solute_carrier_family_15_member_3,FAM167A->chr8:11278972-11332224:-,family_with_sequence_similarity_167_member_A	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	APBB1IP--PIP4K2A	2	0	APBB1IP	1651	chr10:26727782:+	PIP4K2A	31339	chr10:22862386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	APBB1IP->amyloid_beta_precursor_protein_binding_family_B_member_1_interacting_protein,chr10:26727132-26856732:+,PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CXCR4--VPS35	2	0	CXCR4	1120	chr2:136875616:-	VPS35	9739	chr16:46717518:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	CXCR4->C-X-C_motif_chemokine_receptor_4,chr2:136871919-136875735:-,VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--ABR	2	0	DANCR	1530	chr4:53579126:+	ABR	38176	chr17:916404:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DPH6-AS1--RP11-684B21.1	2	0	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	17	119	17	33	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXO1--LINC00598	2	0	FOXO1	2015	chr13:41239720:-	LINC00598	16798	chr13:41034543:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	NEIGHBORS[74661],FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,LINC00598->chr13:41025131-41055143:-,long_intergenic_non-protein_coding_RNA_598	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	FALSE	8	15	1	11	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDDC2--EYA3	2	0	HDDC2	6312	chr6:125613987:-	EYA3	30248	chr1:28330930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	HDDC2->HD_domain_containing_2,chr6:125541108-125623282:-,EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIF1A--EIF3H	2	0	HIF1A	1327	chr14:62162557:+	EIF3H	36985	chr8:117658842:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPH1--NADK2	2	0	HSPH1	4993	chr13:31728770:-	NADK2	34293	chr5:36200382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	HSPH1->Oncogene{Bushman},chr13:31710762-31736525:-,heat_shock_protein_family_H_(Hsp110)_member_1,NADK2->NAD_kinase_2,_mitochondrial,chr5:36192694-36242381:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IFNGR2--ATP5C1	2	0	IFNGR2	5800	chr21:34793992:+	ATP5C1	22548	chr10:7848937:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	IFNGR2->Oncogene{Bushman},chr21:34775202-34851655:+,interferon_gamma_receptor_2_(interferon_gamma_transducer_1),ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLHDC4--ZCCHC14	2	0	KLHDC4	14017	chr16:87764158:-	ZCCHC14	43247	chr16:87446801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	KLHDC4->chr16:87730091-87799598:-,kelch_domain_containing_4,ZCCHC14->chr16:87439852-87525651:-,zinc_finger_CCHC-type_containing_14	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MBNL1--SMYD3	2	0	MBNL1	3666	chr3:151986881:+	SMYD3	33034	chr1:246498776:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NACC1--ELAVL1	2	0	NACC1	1352	chr19:13229268:+	ELAVL1	14800	chr19:8046070:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	NACC1->chr19:13228917-13251955:+,nucleus_accumbens_associated_1,ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NEMF--PTCD3	2	0	NEMF	27383	chr14:50262509:-	PTCD3	49829	chr2:86354284:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NHP2L1--RANBP1	2	0	NHP2L1	2186	chr22:42084798:-	RANBP1	16496	chr22:20109787:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	NHP2L1->chr22:42069934-42086508:-,RANBP1->RAN_binding_protein_1,chr22:20103461-20114878:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIP4K2A--OPA1	2	0	PIP4K2A	8276	chr10:22898549:-	OPA1	36050	chr3:193354984:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha,OPA1->OPA1,_mitochondrial_dynamin_like_GTPase,chr3:193310933-193415612:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXNB2--FDFT1	2	0	PLXNB2	3251	chr22:50733148:-	FDFT1	27755	chr8:11666303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	PLXNB2->chr22:50713408-50746056:-,plexin_B2,FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--RC3H1	2	0	RABGAP1L	34158	chr1:174843644:+	RC3H1	55771	chr1:173962273:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,RC3H1->chr1:173900352-173991435:-,ring_finger_and_CCCH-type_domains_1	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGGTB--PHF15	2	0	RABGGTB	2411	chr1:76253289:+	PHF15	26056	chr5:133901806:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	RABGGTB->Oncogene{Bushman},Rab_geranylgeranyltransferase_beta_subunit,chr1:76251879-76260764:+,PHF15->chr5:133860003-133918918:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF34--RPL17	2	0	RNF34	1178	chr12:121838021:+	RPL17	17770	chr18:47017954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	RNF34->chr12:121837844-121868389:+,ring_finger_protein_34,RPL17->chr18:47014851-47018906:-,ribosomal_protein_L17	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP79--CTC-523E23.11	2	0	RPL23AP79	2311	chr19:59086955:+	CTC-523E23.11	16462	chr19:35341698:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	RPL23AP79->chr19:59084870-59111168:+,ribosomal_protein_L23a_pseudogene_79,CTC-523E23.11->chr19:35340182-35351480:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX10--POLR2J2	2	0	SNX10	1166	chr7:26331706:+	POLR2J2	19570	chr7:102306610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	SNX10->chr7:26331541-26413949:+,sorting_nexin_10,POLR2J2->chr7:102277474-102312076:-,chr7:102277496-102312088:-,polymerase_(RNA)_II_subunit_J2	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSBP2--BDP1	2	0	SSBP2	5324	chr5:80932376:-	BDP1	42065	chr5:70779669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,BDP1->B_double_prime_1,_subunit_of_RNA_polymerase_III_transcription_initiation_factor_IIIB,chr5:70751442-70863649:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUZ12--SUPT16H	2	0	SUZ12	2704	chr17:30267505:+	SUPT16H	35928	chr14:21829372:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	SUZ12->Oncogene{Bushman},SUZ12_polycomb_repressive_complex_2_subunit,chr17:30264037-30328064:+,SUPT16H->SPT16_homolog,_facilitates_chromatin_remodeling_subunit,chr14:21819631-21852425:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THOP1--PPAP2C	2	0	THOP1	6952	chr19:2799789:+	PPAP2C	21652	chr19:288171:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	THOP1->chr19:2785458-2813599:+,thimet_oligopeptidase_1,PPAP2C->chr19:281040-291393:-	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR91--MXD1	2	0	WDR91	5911	chr7:134890680:-	MXD1	23355	chr2:70130313:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	WDR91->WD_repeat_domain_91,chr7:134868590-134896316:-,MXD1->MAX_dimerization_protein_1,Oncogene{Bushman},chr2:70124820-70170077:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDYHV1--PVT1	2	0	WDYHV1	1132	chr8:124429096:+	PVT1	33672	chr8:129082406:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	WDYHV1->WDYHV_motif_containing_1,chr8:124428965-124479470:+,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFAS1--CCM2	2	0	ZFAS1	3511	chr20:47897501:+	CCM2	13320	chr7:45077852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,CCM2->CCM2_scaffolding_protein,chr7:45039074-45116068:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--SRSF5	2	0	ZNF738	7035	chr19:21558766:+	SRSF5	19019	chr14:70237184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF3E--ASH2L	1	1	EIF3E	6301	chr8:109260842:-	ASH2L	37691	chr8:37978450:+	ONLY_REF_SPLICE	NO	21	68	0.09	0.03	0.0106	0.0106	EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E,ASH2L->ash2_(absent,_small,_or_homeotic)-like_(Drosophila),chr8:37962760-38001594:+	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.09	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXO1--LINC00598	1	1	FOXO1	2015	chr13:41239720:-	LINC00598	13384	chr13:41048232:-	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.0106	0.0106	NEIGHBORS[74661],FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,LINC00598->chr13:41025131-41055143:-,long_intergenic_non-protein_coding_RNA_598	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0212	FALSE	0	0	1	4	0	FALSE	ACH-000365
SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX29--PKD1	1	1	SNX29	12818	chr16:12146079:+	PKD1	42689	chr16:2169379:-	ONLY_REF_SPLICE	YES	26	2	0.07	0.5	0.0106	0.0106	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,PKD1->chr16:2138711-2185899:-,polycystin_1,_transient_receptor_potential_channel_interacting	SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.5	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000365
HS863T_FIBROBLAST	TIMM23B--LINC00843	105	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3046	0.3479	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS863T_FIBROBLAST	1	1	1.6525	TRUE	508	994	45	981	0	FALSE	ACH-000119
HS863T_FIBROBLAST	PLXDC1--TAF13	45	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5591	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS863T_FIBROBLAST	1	1	0.5591	TRUE	7	10	0	216	0	FALSE	ACH-000119
HS863T_FIBROBLAST	TIMM23--RP11-464F9.1	44	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	238	3	0.17	0.94	0.5467	0.0497	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS863T_FIBROBLAST	0.17	0.94	0.5964	TRUE	519	3926	326	965	0	FALSE	ACH-000119
HS863T_FIBROBLAST	MT-ND6--MT-TE	18	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2236	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS863T_FIBROBLAST	1	1	0.2236	FALSE	499	1288	110	792	0	FALSE	ACH-000119
HS863T_FIBROBLAST	PRR16--CTD-2334D19.1	14	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	137	0	0.1	1	0.1739	0.0124	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS863T_FIBROBLAST	0.1	1	0.1863	FALSE	56	216	12	147	0	FALSE	ACH-000119
HS863T_FIBROBLAST	RP11-680G10.1--GSE1	12	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	6	1	0.68	0.1491	0.0124	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS863T_FIBROBLAST	0.68	1	0.1615	TRUE	465	1949	224	605	0	FALSE	ACH-000119
HS863T_FIBROBLAST	CHSY3--HSPA8P4	9	10	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	117	0	0.14	1	0.1118	0.1242	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	HS863T_FIBROBLAST	0.14	1	0.236	FALSE	89	26	1	44	0	FALSE	ACH-000119
HS863T_FIBROBLAST	MT-ND6--MT-TE	9	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1118	0.0621	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS863T_FIBROBLAST	0.93	1	0.1739	FALSE	499	1288	110	792	0	FALSE	ACH-000119
HS863T_FIBROBLAST	RP11-680G10.1--GSE1	8	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0994	0.0373	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS863T_FIBROBLAST	0.92	1	0.1367	TRUE	458	1351	185	561	0	FALSE	ACH-000119
HS863T_FIBROBLAST	MT-ND6--MT-TE	8	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0994	0.0124	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS863T_FIBROBLAST	0.9	1	0.1118	FALSE	499	1288	110	792	0	FALSE	ACH-000119
HS863T_FIBROBLAST	PRR16--CTD-2334D19.1	6	9	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	56	0	0.21	1	0.0745	0.1118	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS863T_FIBROBLAST	0.21	1	0.1863	FALSE	21	45	1	60	0	FALSE	ACH-000119
HS863T_FIBROBLAST	ZNF654--HMGB2	8	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0994	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HS863T_FIBROBLAST	1	1	0.0994	TRUE	0	0	0	518	0	FALSE	ACH-000119
HS863T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	6	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.0745	0.0373	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS863T_FIBROBLAST	0.75	1	0.1118	FALSE	515	4851	409	746	0	FALSE	ACH-000119
HS863T_FIBROBLAST	TMSB10--TMSB4X	6	0	TMSB10	1438	chr2:85133186:+	TMSB4X	6247	chrX:12994426:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0745	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS863T_FIBROBLAST	1	1	0.0745	TRUE	0	1	0	17	1	TRUE	ACH-000119
HS863T_FIBROBLAST	HSPBP1--GRK5	4	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HS863T_FIBROBLAST	1	1	0.0497	TRUE	1	39	0	134	39	FALSE	ACH-000119
HS863T_FIBROBLAST	PIGX--TG	4	0	PIGX	3799	chr3:196439805:+	TG	18778	chr8:133879271:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	PIGX->chr3:196366646-196462878:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_X,TG->chr8:133879203-134147147:+,thyroglobulin	HS863T_FIBROBLAST	1	1	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000119
HS863T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0373	0.0497	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS863T_FIBROBLAST	0.7	1	0.087	FALSE	407	2205	196	549	0	FALSE	ACH-000119
HS863T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0.0373	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS863T_FIBROBLAST	1	1	0.0746	FALSE	467	2173	244	435	0	FALSE	ACH-000119
HS863T_FIBROBLAST	CTD-2337A12.1--CAST	3	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	43	1	0.09	0.0373	0.0124	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS863T_FIBROBLAST	0.09	1	0.0497	TRUE	347	1186	183	220	0	FALSE	ACH-000119
HS863T_FIBROBLAST	TMSB10--TMSB4X	3	1	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	3774	4571	0	0	0.0373	0.0124	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS863T_FIBROBLAST	0	0	0.0497	FALSE	0	1	0	17	1	FALSE	ACH-000119
HS863T_FIBROBLAST	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS863T_FIBROBLAST	1	1	0.0373	FALSE	499	1288	110	792	0	FALSE	ACH-000119
HS863T_FIBROBLAST	CPSF6--CHMP1A	2	1	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	79	267	0.04	0.01	0.0248	0.0124	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HS863T_FIBROBLAST	0.01	0.04	0.0372	FALSE	95	74	6	34	0	FALSE	ACH-000119
HS863T_FIBROBLAST	ASCC3--SLC30A9	2	0	ASCC3	42277	chr6:100988039:-	SLC30A9	64081	chr4:42067327:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	ASCC3->activating_signal_cointegrator_1_complex_subunit_3,chr6:100956070-101329248:-,SLC30A9->chr4:41992489-42092474:+,solute_carrier_family_30_member_9	HS863T_FIBROBLAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000119
HS863T_FIBROBLAST	DNAJC17--SUMF2	2	0	DNAJC17	1109	chr15:41099567:-	SUMF2	15848	chr7:56140690:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	DNAJC17->DnaJ_heat_shock_protein_family_(Hsp40)_member_C17,chr15:41060067-41099675:-,SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2	HS863T_FIBROBLAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000119
HS863T_FIBROBLAST	PLS3--OXCT1	2	0	PLS3	6438	chrX:114856721:+	OXCT1	29412	chr5:41850281:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	PLS3->chrX:114795501-114885181:+,plastin_3,OXCT1->3-oxoacid_CoA-transferase_1,chr5:41730167-41870621:-	HS863T_FIBROBLAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000119
HS863T_FIBROBLAST	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HS863T_FIBROBLAST	1	1	0.0248	FALSE	46	201	11	112	0	FALSE	ACH-000119
HS863T_FIBROBLAST	RP11-449H11.1--FAM195B	2	0	RP11-449H11.1	1160	chr16:25122717:-	FAM195B	11902	chr17:79782430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	RP11-449H11.1->chr16:25096913-25122876:-,FAM195B->chr17:79780287-79791178:-	HS863T_FIBROBLAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000119
HS863T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	3	0	0.62	1	0.0124	0.0497	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS863T_FIBROBLAST	0.62	1	0.0621	FALSE	275	511	55	178	0	FALSE	ACH-000119
HS863T_FIBROBLAST	SEMA3C--GNAI1	2	0	SEMA3C	4287	chr7:80545995:-	GNAI1	39138	chr7:79818267:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},SEMA3C->chr7:80371854-80551675:-,semaphorin_3C,GNAI1->G_protein_subunit_alpha_i1,chr7:79763271-79848718:+	HS863T_FIBROBLAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000119
HS863T_FIBROBLAST	PRR16--CTD-2334D19.1	1	3	PRR16	6887	chr5:119954260:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	155	0	0.03	1	0.0124	0.0373	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS863T_FIBROBLAST	0.03	1	0.0497	FALSE	0	2	0	14	0	FALSE	ACH-000119
HS863T_FIBROBLAST	ADPGK--NFU1	1	1	ADPGK	3981	chr15:73067213:-	NFU1	22620	chr2:69642431:-	ONLY_REF_SPLICE	YES	94	182	0.02	0.01	0.0124	0.0124	ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-,NFU1->NFU1_iron-sulfur_cluster_scaffold,chr2:69622882-69664760:-	HS863T_FIBROBLAST	0.01	0.02	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000119
HS863T_FIBROBLAST	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	70	1	0.03	0.0124	0.0124	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS863T_FIBROBLAST	0.03	1	0.0248	TRUE	15	36	8	26	0	FALSE	ACH-000119
HS863T_FIBROBLAST	FN1--EPHA5	1	1	FN1	33999	chr2:216246935:-	EPHA5	67616	chr4:66231775:-	ONLY_REF_SPLICE	YES	5732	208	0	0.01	0.0124	0.0124	HGNC_GENEFAM,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,EPHA5->ArcherDX_panel,EPH_receptor_A5,FoundationOne_panel,chr4:66185281-66536213:-	HS863T_FIBROBLAST	0	0.01	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000119
HS863T_FIBROBLAST	PRR16--CTD-2334D19.1	1	1	PRR16	3559	chr5:119816988:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	156	0	0.01	1	0.0124	0.0124	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS863T_FIBROBLAST	0.01	1	0.0248	FALSE	1	5	0	12	0	FALSE	ACH-000119
HS863T_FIBROBLAST	YES1--USP14	1	1	YES1	1433	chr18:812115:-	USP14	22419	chr18:163308:+	ONLY_REF_SPLICE	NO	54	81	0.04	0.02	0.0124	0.0124	YES1->Oncogene{Bushman},YES_proto-oncogene_1,_Src_family_tyrosine_kinase,chr18:721588-812547:-,USP14->chr18:158383-214629:+,ubiquitin_specific_peptidase_14	HS863T_FIBROBLAST	0.02	0.04	0.0248	TRUE	0	0	0	1	0	FALSE	ACH-000119
HS863T_FIBROBLAST	ZNF77--NIPA2	1	1	ZNF77	2658	chr19:2939279:-	NIPA2	14999	chr15:23014528:-	ONLY_REF_SPLICE	YES	11	171	0.15	0.01	0.0124	0.0124	ZNF77->chr19:2933216-2944969:-,zinc_finger_protein_77,NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2	HS863T_FIBROBLAST	0.01	0.15	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000119
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	119	11	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.4023	0.1296	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.5319	TRUE	0	3	0	38	3	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	59	48	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	10	0	0.91	1	0.6952	0.5656	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	1.2608	FALSE	20	187	4	79	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	51	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.601	0.2592	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8602	TRUE	508	994	45	981	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A1--MTUS2	40	11	SLC7A1	1273	chr13:30169553:-	MTUS2	42343	chr13:30075234:+	ONLY_REF_SPLICE	YES	3	0	0.94	1	0.4714	0.1296	LOCAL_INVERSION:-:+:[5655],SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1,MTUS2->chr13:29598748-30077892:+,microtubule_associated_tumor_suppressor_candidate_2	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.601	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	35	30	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	4	0	0.94	1	0.4124	0.3535	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.7659	TRUE	0	5	0	45	5	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP11A--CTD-2213F21.2	34	2	ATP11A	1127	chr13:113344769:+	CTD-2213F21.2	50716	chr14:31914850:+	ONLY_REF_SPLICE	YES	6	0	0.86	1	0.4007	0.0236	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,CTD-2213F21.2->chr14:31889492-31922089:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.4243	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	33	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3889	0.0236	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4125	FALSE	462	80	0	856	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	28	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	96	3	0.24	0.91	0.3299	0.0236	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.91	0.3535	TRUE	519	3926	326	965	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC073072.5--STEAP1B	26	0	AC073072.5	1053	chr7:22767187:-	STEAP1B	6230	chr7:22672541:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3064	0	NEIGHBORS[92470],AC073072.5->chr7:22765014-22767239:-,STEAP1B->STEAP_family_member_1B,chr7:22459063-22672544:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3064	FALSE	0	0	0	5	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--B2M	22	4	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	12123	0	0	1	0.2592	0.0471	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3063	TRUE	0	0	0	28	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	20	0	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2357	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2357	FALSE	101	855	57	72	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	17	6	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	10782	0	0	1	0.2003	0.0707	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.271	TRUE	0	0	0	100	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UCK2--RP11-284J1.1	17	4	UCK2	1402	chr1:165797169:+	RP11-284J1.1	22947	chr6:775630:-	INCL_NON_REF_SPLICE	YES	40	69	0.34	0.23	0.2003	0.0471	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,RP11-284J1.1->chr6:774747-780214:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.34	0.2474	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUDT3--NLGN1	15	10	NUDT3	1411	chr6:34360041:-	NLGN1	32712	chr3:173993105:+	ONLY_REF_SPLICE	YES	66	0	0.27	1	0.1768	0.1178	NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3,NLGN1->chr3:173114074-174004434:+,neuroligin_1	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.2946	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBA52--RPS28	15	10	UBA52	4112	chr19:18685730:+	RPS28	10085	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	6356	0	0	1	0.1768	0.1178	UBA52->chr19:18682540-18688360:+,ubiquitin_A-52_residue_ribosomal_protein_fusion_product_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2946	TRUE	0	0	0	2	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	4	53	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	8101	chr18:53709517:+	INCL_NON_REF_SPLICE	YES	10	0	0.85	1	0.0471	0.6245	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.6716	FALSE	0	1	0	2	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP11A--NUBPL	14	5	ATP11A	1127	chr13:113344769:+	NUBPL	47903	chr14:31995258:+	ONLY_REF_SPLICE	YES	6	0	0.76	1	0.165	0.0589	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.2239	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	15	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1768	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1768	TRUE	0	0	0	81	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIB1--RP11-739N10.1	10	15	MIB1	13123	chr18:19383975:+	RP11-739N10.1	41740	chr18:24972831:-	ONLY_REF_SPLICE	YES	123	0	0.17	1	0.1178	0.1768	MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1,RP11-739N10.1->chr18:24916343-25175128:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.2946	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	10	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	171	18	0.12	0.57	0.1178	0.165	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.57	0.2828	TRUE	267	562	48	632	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	1	48	CTD-2008L17.1	3828	chr18:53685010:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	2	0	0.96	1	0.0118	0.5656	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.5774	FALSE	1	24	0	14	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	9	16	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	6	0	0.81	1	0.1061	0.1885	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.2946	TRUE	5	4	0	46	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	4	35	AP003900.6	1122	chr21:11169841:+	AC011718.2	10100	chr22:20656924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0.4124	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4595	TRUE	0	0	0	11	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIB1--RP11-739N10.1	10	7	MIB1	13123	chr18:19383975:+	RP11-739N10.1	47656	chr18:24917151:-	ONLY_REF_SPLICE	YES	123	7	0.12	0.71	0.1178	0.0825	MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1,RP11-739N10.1->chr18:24916343-25175128:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.71	0.2003	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UCK2--RP11-284J1.1	5	25	UCK2	1402	chr1:165797169:+	RP11-284J1.1	21608	chr6:776969:-	ONLY_REF_SPLICE	YES	40	3	0.43	0.91	0.0589	0.2946	UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2,RP11-284J1.1->chr6:774747-780214:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.91	0.3535	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	8	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	2	0.79	0.9	0.0943	0.1296	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	0.9	0.2239	FALSE	515	4851	409	746	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	9	6	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	0	5	1	0.75	0.1061	0.0707	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.1768	TRUE	0	1	0	26	1	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL5	9	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1061	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1061	TRUE	0	0	0	39	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1061	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1061	FALSE	13	9	0	364	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	9	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1061	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1061	FALSE	183	104	9	328	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	5	14	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	10	6	0.66	0.76	0.0589	0.165	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	0.76	0.2239	FALSE	33	240	4	98	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	8	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0943	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0943	TRUE	22	156	2	142	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	168	18	0.09	0.47	0.0589	0.1296	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.47	0.1885	TRUE	267	562	48	632	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0825	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0825	FALSE	499	1288	110	792	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPLP1	6	3	EEF2	9763	chr19:3976549:-	RPLP1	13293	chr15:69745157:+	INCL_NON_REF_SPLICE	YES	7971	0	0	1	0.0707	0.0354	GTEx&tcga_normals:2/3694=0.05%,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1061	TRUE	0	0	0	3	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0707	0.0354	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1061	FALSE	462	80	0	856	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0589	0.0354	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0943	FALSE	462	80	0	856	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBA52--RPS28	4	7	UBA52	4124	chr19:18685742:+	RPS28	10097	chr19:8386396:+	INCL_NON_REF_SPLICE	YES	5731	0	0	1	0.0471	0.0825	UBA52->chr19:18682540-18688360:+,ubiquitin_A-52_residue_ribosomal_protein_fusion_product_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1296	TRUE	0	0	0	2	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	5	2	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0589	0.0236	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0825	TRUE	0	2	0	37	2	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	3	8	EEF2	8863	chr19:3977449:-	RPS28	13639	chr19:8386422:+	INCL_NON_REF_SPLICE	YES	9861	0	0	1	0.0354	0.0943	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1297	TRUE	0	0	0	100	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0589	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0589	FALSE	499	1288	110	792	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-476K15.1--CTD-2015H3.2	4	4	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0471	0.0471	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0942	FALSE	0	46	0	73	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.93	0.88	0.0236	0.1414	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.93	0.165	FALSE	467	2173	244	435	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	1	15	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	13011	chr18:53755642:+	ONLY_REF_SPLICE	YES	10	5	0.62	0.76	0.0118	0.1768	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.76	0.1886	FALSE	0	12	0	8	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	4	3	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	23	0	0.23	1	0.0471	0.0354	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.0825	FALSE	272	151	14	158	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC073072.5--STEAP1B	4	2	AC073072.5	3095	chr7:22765145:-	STEAP1B	6230	chr7:22672541:-	INCL_NON_REF_SPLICE	YES	5	0	0.55	1	0.0471	0.0236	NEIGHBORS[92470],AC073072.5->chr7:22765014-22767239:-,STEAP1B->STEAP_family_member_1B,chr7:22459063-22672544:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.0707	FALSE	0	0	0	1	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIB1--RP11-739N10.1	2	10	MIB1	13123	chr18:19383975:+	RP11-739N10.1	46560	chr18:24918666:-	ONLY_REF_SPLICE	YES	123	3	0.09	0.8	0.0236	0.1178	MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1,RP11-739N10.1->chr18:24916343-25175128:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.8	0.1414	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--NPM1	4	2	TXNDC5	2343	chr6:7910752:-	NPM1	18924	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	1629	0	0	1	0.0471	0.0236	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0707	FALSE	0	0	0	5	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	1	13	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	3	0	0.82	1	0.0118	0.1532	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.165	TRUE	0	0	0	21	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	4	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0471	TRUE	0	5	1	24	1	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0471	FALSE	499	1288	110	792	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.93	1	0.0118	0.1414	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1532	FALSE	192	492	57	212	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIB1--RP11-739N10.1	1	11	MIB1	13123	chr18:19383975:+	RP11-739N10.1	42824	chr18:24954211:-	ONLY_REF_SPLICE	YES	123	0	0.09	1	0.0118	0.1296	MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1,RP11-739N10.1->chr18:24916343-25175128:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.1414	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	3	MT-ND1	1303	chrM:3609:+	MT-RNR2	5007	chrM:1721:+	INCL_NON_REF_SPLICE	YES	118	0	0.05	1	0.0354	0.0354	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0708	FALSE	114	26	4	85	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-476K15.1--CTD-2015H3.2	3	3	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	2	1	0.75	0.86	0.0354	0.0354	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.86	0.0708	FALSE	0	46	0	73	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	2	7	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.0236	0.0825	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.1061	TRUE	5	12	0	42	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.71	1	0.0118	0.1296	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.1414	FALSE	407	2205	196	549	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	2	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	92	0	0.05	1	0.0354	0.0236	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.059	FALSE	114	26	4	85	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	0	EIF1	1103	chr17:39845239:+	RPS28	8148	chr19:8386405:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	81	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	81	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	FALSE	499	1288	110	792	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCARB1--UBC	3	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	55	66	6	101	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBL1X--C5orf30	3	0	TBL1X	1168	chrX:9431502:+	C5orf30	30673	chr5:102601609:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	TBL1X->chrX:9431335-9687780:+,transducin_(beta)-like_1X-linked,C5orf30->chr5:102594403-102614361:+,chromosome_5_open_reading_frame_30	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	1	7	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	NO	6	0	0.57	1	0.0118	0.0825	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.0943	TRUE	1	1	0	17	1	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	3	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	24436	chr10:114650725:+	ONLY_REF_SPLICE	YES	23	0	0.18	1	0.0236	0.0354	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.059	FALSE	21	3	0	16	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	1	6	AP003900.6	1122	chr21:11169841:+	AC011718.2	11864	chr22:20653813:-	ONLY_REF_SPLICE	NO	0	1	1	0.88	0.0118	0.0707	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0825	TRUE	0	3	0	38	3	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FNDC3A--ITM2B	2	2	FNDC3A	3144	chr13:49580425:+	ITM2B	36852	chr13:48827944:+	ONLY_REF_SPLICE	YES	238	535	0.02	0.01	0.0236	0.0236	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Pancreas=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Whole_Blood=1},FNDC3A->chr13:49550048-49783915:+,fibronectin_type_III_domain_containing_3A,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0472	FALSE	0	2	0	2	1	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0391--LAMP1	1	6	KIAA0391	6550	chr14:35649983:+	LAMP1	30545	chr13:113976597:+	ONLY_REF_SPLICE	YES	106	322	0.06	0.02	0.0118	0.0707	KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+,LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.06	0.0825	TRUE	0	0	0	1	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0236	0.0118	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.0354	FALSE	16	356	14	466	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPA3-AS1--PHF14	2	1	RPA3-AS1	3140	chr7:7713084:+	PHF14	42747	chr7:11150977:+	ONLY_REF_SPLICE	YES	53	68	0.05	0.04	0.0236	0.0118	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Hypothalamus=1,Adipose_-_Subcutaneous=1},RPA3-AS1->chr7:7680342-8043689:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.05	0.0354	TRUE	1	7	0	2	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B3GNT4--AMY2B	2	0	B3GNT4	1259	chr12:122688348:+	AMY2B	17831	chr1:104114179:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	B3GNT4->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_4,chr12:122688090-122693499:+,AMY2B->amylase,_alpha_2B_(pancreatic),chr1:104096437-104122156:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COG3--VWA8	2	0	COG3	8758	chr13:46057490:+	VWA8	40007	chr13:42442613:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	COG3->chr13:46039060-46110765:+,component_of_oligomeric_golgi_complex_3,VWA8->chr13:42140973-42535256:-,von_Willebrand_factor_A_domain_containing_8	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DYNC1I2--HAT1	2	0	DYNC1I2	4477	chr2:172549404:+	HAT1	25382	chr2:172803228:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	DYNC1I2->chr2:172543919-172604930:+,dynein_cytoplasmic_1_intermediate_chain_2,HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FNDC3A--ITM2B	2	0	FNDC3A	2006	chr13:49551053:+	ITM2B	36852	chr13:48827944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Pancreas=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Whole_Blood=1},FNDC3A->chr13:49550048-49783915:+,fibronectin_type_III_domain_containing_3A,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	2	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	FALSE	0	24	0	62	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRBP1--ARSG	2	0	NRBP1	1942	chr2:27651598:+	ARSG	19497	chr17:66303084:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NRBP1->chr2:27650657-27665126:+,nuclear_receptor_binding_protein_1,ARSG->arylsulfatase_G,chr17:66255323-66418872:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCNP--NBEAP1	2	0	PCNP	1185	chr3:101293123:+	NBEAP1	13973	chr15:20876597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	PCNP->PEST_proteolytic_signal_containing_nuclear_protein,chr3:101292939-101313281:+,NBEAP1->Oncogene{Bushman},chr15:20862967-20893737:-,neurobeachin_pseudogene_1	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RB1--ITM2B	2	0	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	53	73	8	19	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	1	4	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	20885	chr5:104311586:-	ONLY_REF_SPLICE	YES	6	2	0.45	0.71	0.0118	0.0471	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.71	0.0589	TRUE	1	2	0	8	1	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTC3--ARL6IP6	2	0	TTC3	1139	chr21:38445664:+	ARL6IP6	68869	chr2:153577047:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,ARL6IP6->ADP_ribosylation_factor_like_GTPase_6_interacting_protein_6,chr2:153574407-153617767:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF398--WHSC1L1	2	0	ZNF398	1240	chr7:148823747:+	WHSC1L1	25041	chr8:38196125:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZNF398->chr7:148823508-148880116:+,zinc_finger_protein_398,WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC005932.1--CSNK1G2	1	1	AC005932.1	1303	chr19:19051433:+	CSNK1G2	12783	chr19:1969507:+	ONLY_REF_SPLICE	NO	48	4	0.04	0.33	0.0118	0.0118	AC005932.1->chr19:19051131-19057640:+,CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.33	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADAM17--NOL10	1	1	ADAM17	1284	chr2:9695638:-	NOL10	38897	chr2:10784498:-	ONLY_REF_SPLICE	NO	102	117	0.02	0.02	0.0118	0.0118	ADAM17->ADAM_metallopeptidase_domain_17,chr2:9628615-9695921:-,NOL10->chr2:10710892-10830101:-,nucleolar_protein_10	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C12orf76--ARPC3	1	1	C12orf76	9865	chr12:110486168:-	ARPC3	22675	chr12:110878193:-	ONLY_REF_SPLICE	YES	149	1839	0.01	0	0.0118	0.0118	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},C12orf76->chr12:110465872-110511491:-,chromosome_12_open_reading_frame_76,ARPC3->actin_related_protein_2/3_complex_subunit_3,chr12:110872630-110888227:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0236	FALSE	1	1	1	1	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CASD1--PPP1R9A	1	1	CASD1	19451	chr7:94183887:+	PPP1R9A	32154	chr7:94791179:+	ONLY_REF_SPLICE	YES	75	40	0.03	0.05	0.0118	0.0118	CASD1->CAS1_domain_containing_1,chr7:94138531-94186331:+,PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.05	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--SHARPIN	1	1	CPSF6	11046	chr12:69656342:+	SHARPIN	23181	chr8:145158128:-	ONLY_REF_SPLICE	NO	174	65	0.01	0.03	0.0118	0.0118	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SHARPIN->SHANK_associated_RH_domain_interactor,chr8:145153536-145163027:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTNNA1--MATR3	1	1	CTNNA1	17161	chr5:138163407:+	MATR3	58734	chr5:138650364:+	ONLY_REF_SPLICE	NO	151	289	0.01	0.01	0.0118	0.0118	GTEx&tcga_normals:1/3694=0.03%,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,MATR3->chr5:138609441-138667360:+,matrin_3	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0236	FALSE	0	0	0	6	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GS1-600G8.3--RBM25	1	1	GS1-600G8.3	6903	chrX:13334821:+	RBM25	26485	chr14:73569900:+	ONLY_REF_SPLICE	YES	0	256	1	0.01	0.0118	0.0118	GS1-600G8.3->chrX:13328771-13338052:+,RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED16--PPP1R12C	1	1	MED16	9051	chr19:879937:-	PPP1R12C	29680	chr19:55607703:-	ONLY_REF_SPLICE	YES	142	105	0.01	0.02	0.0118	0.0118	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Whole_Blood=1},MED16->chr19:867962-893218:-,mediator_complex_subunit_16,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0236	FALSE	1	0	0	1	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	P4HB--NT5DC2	1	1	P4HB	2514	chr17:79817057:-	NT5DC2	17892	chr3:52563350:-	ONLY_REF_SPLICE	YES	3826	265	0	0.01	0.0118	0.0118	P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta,NT5DC2->5'-nucleotidase_domain_containing_2,chr3:52558386-52569070:-	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POM121C--HMHA1	1	1	POM121C	4024	chr7:75103970:-	HMHA1	31571	chr19:1077856:+	ONLY_REF_SPLICE	YES	86	399	0.02	0	0.0118	0.0118	POM121C->POM121_transmembrane_nucleoporin_C,chr7:75046066-75115548:-,HMHA1->chr19:1065922-1086627:+,histocompatibility_(minor)_HA-1	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RERE--CDK12	1	1	RERE	6711	chr1:8716032:-	CDK12	43534	chr17:37627132:+	ONLY_REF_SPLICE	NO	66	49	0.03	0.04	0.0118	0.0118	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNASEK--CTIF	1	1	RNASEK	1345	chr17:6916080:+	CTIF	20748	chr18:46287761:+	ONLY_REF_SPLICE	YES	1070	86	0	0.02	0.0118	0.0118	RNASEK->chr17:6915736-6917851:+,ribonuclease_K,CTIF->CBP80/20-dependent_translation_initiation_factor,Oncogene{Bushman},chr18:46065417-46389588:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-400D2.2--AIMP1	1	1	RP11-400D2.2	3111	chr4:135228696:-	AIMP1	10996	chr4:107246142:+	ONLY_REF_SPLICE	YES	63	1	0.03	0.67	0.0118	0.0118	RP11-400D2.2->chr4:135176328-135248628:-,AIMP1->aminoacyl_tRNA_synthetase_complex-interacting_multifunctional_protein_1,chr4:107236701-107270383:+	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.67	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSSC1--TRAPPC12	1	1	TSSC1	14009	chr2:3217920:-	TRAPPC12	47442	chr2:3481466:+	ONLY_REF_SPLICE	YES	123	28	0.02	0.07	0.0118	0.0118	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Hippocampus=1,Liver=1,Brain_-_Frontal_Cortex_(BA9)=1,Muscle_-_Skeletal=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:-:+:[1793],TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1,TRAPPC12->chr2:3383446-3488865:+,trafficking_protein_particle_complex_12	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.07	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000436
OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSSC1--UBE2R2	1	1	TSSC1	1235	chr2:3381419:-	UBE2R2	25814	chr9:33886879:+	ONLY_REF_SPLICE	YES	219	245	0.01	0.01	0.0118	0.0118	TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	OCIMY7_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000436
HT1376_URINARY_TRACT	AP003900.6--AC011718.2	69	2	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.7724	0.0224	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	HT1376_URINARY_TRACT	1	1	0.7948	TRUE	0	3	0	38	3	FALSE	ACH-000724
HT1376_URINARY_TRACT	RP11-494M8.4--OVCH2	44	23	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	13	0	0.84	1	0.4925	0.2575	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	HT1376_URINARY_TRACT	0.84	1	0.75	FALSE	32	0	0	22	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	TIMM23B--LINC00843	47	8	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5261	0.0896	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HT1376_URINARY_TRACT	1	1	0.6157	TRUE	508	994	45	981	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND6--MT-TE	37	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4142	0.0336	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT1376_URINARY_TRACT	1	1	0.4478	FALSE	499	1288	110	792	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	36	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	11068	3	0	0.93	0.403	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.93	0.4142	FALSE	230	193	14	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	ZNF654--HMGB2	32	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3582	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HT1376_URINARY_TRACT	1	1	0.3582	TRUE	0	0	0	518	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MIPEPP3--ABHD12	31	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.347	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	HT1376_URINARY_TRACT	1	1	0.347	TRUE	64	202	9	44	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-TA--MT-TC	28	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3134	0.0112	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HT1376_URINARY_TRACT	1	1	0.3246	FALSE	462	80	0	856	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	TCF12--ZNF826P	24	11	TCF12	3439	chr15:57213296:+	ZNF826P	59946	chr19:20451910:-	ONLY_REF_SPLICE	YES	46	0	0.43	1	0.2687	0.1231	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,ZNF826P->chr19:20451078-20607775:-,zinc_finger_protein_826,_pseudogene	HT1376_URINARY_TRACT	0.43	1	0.3918	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	MT-ND6--MT-TE	25	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2798	0.0448	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT1376_URINARY_TRACT	1	1	0.3246	FALSE	499	1288	110	792	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND6--MT-TE	21	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.2351	0.1903	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT1376_URINARY_TRACT	0.95	1	0.4254	FALSE	499	1288	110	792	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	TIMM23--RP11-464F9.1	23	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2575	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HT1376_URINARY_TRACT	1	1	0.2575	TRUE	519	3926	326	965	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	USP7--MBOAT1	22	4	USP7	8404	chr16:9024150:-	MBOAT1	37975	chr6:20153000:-	ONLY_REF_SPLICE	YES	103	171	0.2	0.13	0.2463	0.0448	USP7->Oncogene{Bushman},chr16:8985951-9058371:-,ubiquitin_specific_peptidase_7_(herpes_virus-associated),MBOAT1->chr6:20100935-20212670:-,membrane_bound_O-acyltransferase_domain_containing_1	HT1376_URINARY_TRACT	0.13	0.2	0.2911	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	ARID2--MACC1	19	12	ARID2	2571	chr12:46125097:+	MACC1	36360	chr7:20210401:-	ONLY_REF_SPLICE	YES	14	2	0.69	0.94	0.2127	0.1343	ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,MACC1->chr7:20174278-20257027:-,metastasis_associated_in_colon_cancer_1	HT1376_URINARY_TRACT	0.69	0.94	0.347	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	NPM1P24--SET	21	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2351	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HT1376_URINARY_TRACT	1	1	0.2351	TRUE	0	0	0	434	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	19	4	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	6	0	0.79	1	0.2127	0.0448	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0.79	1	0.2575	FALSE	43	37	8	105	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	NPM1P24--SET	19	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2127	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HT1376_URINARY_TRACT	1	1	0.2127	TRUE	0	0	0	434	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	RP11-494M8.4--OVCH2	12	28	RP11-494M8.4	10901	chr11:7775931:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1343	0.3134	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	HT1376_URINARY_TRACT	1	1	0.4477	FALSE	16	1	1	11	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	AP003900.6--AC011718.2	17	5	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	2	0	0.92	1	0.1903	0.056	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	HT1376_URINARY_TRACT	0.92	1	0.2463	TRUE	0	5	0	45	5	FALSE	ACH-000724
HT1376_URINARY_TRACT	AC003665.1--CDK5RAP3	18	0	AC003665.1	1075	chr17:46018702:-	CDK5RAP3	11193	chr17:46048728:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2015	0	LOCAL_INVERSION:-:+:[26400],AC003665.1->chr17:45974696-46018776:-,CDK5RAP3->CDK5_regulatory_subunit_associated_protein_3,chr17:46045176-46059140:+	HT1376_URINARY_TRACT	1	1	0.2015	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	SCYL1--FRMD8	15	12	SCYL1	8867	chr11:65303805:+	FRMD8	17069	chr11:65161044:+	ONLY_REF_SPLICE	YES	142	104	0.16	0.21	0.1679	0.1343	SCYL1->Oncogene{Bushman},SCY1_like_pseudokinase_1,chr11:65292548-65306175:+,FRMD8->FERM_domain_containing_8,Oncogene{Bushman},chr11:65154070-65180996:+	HT1376_URINARY_TRACT	0.16	0.21	0.3022	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	16	3	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4187	5	0	0.79	0.1791	0.0336	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.79	0.2127	FALSE	43	37	8	105	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	14	2	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5149	58	0	0.22	0.1567	0.0224	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.22	0.1791	FALSE	43	37	8	105	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	RP11-494M8.4--OVCH2	8	26	RP11-494M8.4	8241	chr11:7873820:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	7	0	0.83	1	0.0896	0.291	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	HT1376_URINARY_TRACT	0.83	1	0.3806	FALSE	1	0	0	7	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	14	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13083	5	0	0.75	0.1567	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.75	0.1679	FALSE	231	205	14	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	ARID2--MACC1	8	14	ARID2	2571	chr12:46125097:+	MACC1	34121	chr7:20238293:-	ONLY_REF_SPLICE	YES	14	0	0.61	1	0.0896	0.1567	ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,MACC1->chr7:20174278-20257027:-,metastasis_associated_in_colon_cancer_1	HT1376_URINARY_TRACT	0.61	1	0.2463	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	MT-ND6--MT-TE	6	22	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0672	0.2463	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT1376_URINARY_TRACT	0.93	1	0.3135	FALSE	499	1288	110	792	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	RP11-494M8.4--OVCH2	10	4	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	35	0	0.29	1	0.1119	0.0448	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	HT1376_URINARY_TRACT	0.29	1	0.1567	FALSE	60	13	8	23	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	ARID2--MACC1	8	9	ARID2	2571	chr12:46125097:+	MACC1	39055	chr7:20201493:-	ONLY_REF_SPLICE	YES	14	10	0.55	0.63	0.0896	0.1007	ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,MACC1->chr7:20174278-20257027:-,metastasis_associated_in_colon_cancer_1	HT1376_URINARY_TRACT	0.55	0.63	0.1903	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	AC003665.1--CDK5RAP3	10	0	AC003665.1	1064	chr17:46018713:-	CDK5RAP3	11193	chr17:46048728:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1119	0	LOCAL_INVERSION:-:+:[26400],AC003665.1->chr17:45974696-46018776:-,CDK5RAP3->CDK5_regulatory_subunit_associated_protein_3,chr17:46045176-46059140:+	HT1376_URINARY_TRACT	1	1	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	C15orf57--CBX3	8	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	24	47	0.4	0.25	0.0896	0.0896	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HT1376_URINARY_TRACT	0.25	0.4	0.1792	TRUE	267	562	48	632	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	AP003900.6--AC011718.2	9	2	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1007	0.0224	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	HT1376_URINARY_TRACT	1	1	0.1231	TRUE	0	1	0	26	1	FALSE	ACH-000724
HT1376_URINARY_TRACT	C15orf57--CBX3	8	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	23	47	0.38	0.23	0.0896	0.0672	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HT1376_URINARY_TRACT	0.23	0.38	0.1568	TRUE	267	562	48	632	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	9	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11065	5	0	0.67	0.1007	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.67	0.1119	FALSE	230	198	14	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	RP11-141M1.3--STARD13	8	4	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	18	0.92	0.4	0.0896	0.0448	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HT1376_URINARY_TRACT	0.4	0.92	0.1344	FALSE	141	264	50	91	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	RP11-680G10.1--GSE1	9	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1007	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HT1376_URINARY_TRACT	1	1	0.1007	TRUE	465	1949	224	605	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	8	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13364	5	0	0.69	0.0896	0.0336	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.69	0.1232	FALSE	231	217	16	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND6--MT-TE	3	23	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0336	0.2575	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT1376_URINARY_TRACT	0.96	1	0.2911	FALSE	499	1288	110	792	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	7	3	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13007	0	0	1	0.0784	0.0336	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	1	0.112	FALSE	231	217	16	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	7	2	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	15879	522	0	0.02	0.0784	0.0224	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.02	0.1008	FALSE	231	217	16	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	ACOXL--ACVRL1	6	4	ACOXL	11562	chr2:111598982:+	ACVRL1	34146	chr12:52306254:+	ONLY_REF_SPLICE	YES	21	0	0.32	1	0.0672	0.0448	ACOXL->acyl-CoA_oxidase-like,chr2:111490150-111875799:+,ACVRL1->activin_A_receptor_like_type_1,chr12:52300692-52317145:+	HT1376_URINARY_TRACT	0.32	1	0.112	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	6	4	MT-ND5	2667	chrM:14003:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1397	0	0.01	1	0.0672	0.0448	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0.01	1	0.112	FALSE	43	37	8	105	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	6	2	MT-ND4	1477	chrM:11236:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14498	5	0	0.62	0.0672	0.0224	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.62	0.0896	FALSE	231	217	16	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	PCCA--SNX13	6	2	PCCA	16218	chr13:100925600:+	SNX13	60028	chr7:17874488:-	ONLY_REF_SPLICE	YES	16	59	0.33	0.12	0.0672	0.0224	PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit,SNX13->chr7:17830385-17980124:-,sorting_nexin_13	HT1376_URINARY_TRACT	0.12	0.33	0.0896	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	SUFU--RP11-18I14.10	6	2	SUFU	3620	chr10:104309863:+	RP11-18I14.10	27974	chr10:104215094:+	ONLY_REF_SPLICE	YES	6	35	0.57	0.19	0.0672	0.0224	LOCAL_REARRANGEMENT:+:[42881],SUFU->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SUFU_negative_regulator_of_hedgehog_signaling,chr10:104263744-104393292:+,RP11-18I14.10->chr10:104209574-104220863:+	HT1376_URINARY_TRACT	0.19	0.57	0.0896	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	ANXA1--MT-ND5	6	1	ANXA1	9359	chr9:75780086:+	MT-ND5	17331	chrM:12389:+	INCL_NON_REF_SPLICE	YES	5683	1	0	0.88	0.0672	0.0112	ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HT1376_URINARY_TRACT	0	0.88	0.0784	FALSE	0	0	0	2	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-TA--MT-TC	6	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0672	0.0112	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HT1376_URINARY_TRACT	1	1	0.0784	FALSE	462	80	0	856	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	RP11-141M1.3--STARD13	5	5	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	18	0.91	0.36	0.056	0.056	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HT1376_URINARY_TRACT	0.36	0.91	0.112	FALSE	49	120	16	70	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	HSP90AB1--MT-RNR2	5	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1910	0	0	1	0.056	0.0336	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HT1376_URINARY_TRACT	0	1	0.0896	FALSE	13	9	0	364	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	5	3	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	13254	0	0	1	0.056	0.0336	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	1	0.0896	FALSE	231	217	16	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	5	3	MT-ND5	2514	chrM:13850:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3539	58	0	0.12	0.056	0.0336	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.12	0.0896	FALSE	43	37	8	105	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	5	2	MT-ND5	1908	chrM:13244:+	MT-ATP8	5957	chrM:8510:+	INCL_NON_REF_SPLICE	YES	4899	1685	0	0	0.056	0.0224	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0	0.0784	FALSE	43	37	8	105	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	5	1	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	14383	0	0	1	0.056	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	1	0.0672	FALSE	231	205	14	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	AP003900.6--AC011718.2	4	4	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0448	0.0448	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	HT1376_URINARY_TRACT	0.89	1	0.0896	TRUE	0	0	0	21	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	5	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	1	1	0.056	FALSE	231	205	14	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT1376_URINARY_TRACT	1	1	0.056	FALSE	499	1288	110	792	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HT1376_URINARY_TRACT	1	1	0.056	TRUE	0	0	0	434	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	CTD-2008L17.1--RP11-456O19.2	4	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0448	0.0336	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HT1376_URINARY_TRACT	0.7	1	0.0784	FALSE	20	187	4	79	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	HSP90AB1--MT-RNR2	4	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1898	0	0	1	0.0448	0.0336	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HT1376_URINARY_TRACT	0	1	0.0784	FALSE	13	9	0	364	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	4	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12758	58	0	0.11	0.0448	0.0336	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.11	0.0784	FALSE	231	217	16	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	4	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	14473	0	0	1	0.0448	0.0224	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	1	0.0672	FALSE	231	217	16	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	4	2	MT-ND4	1445	chrM:11204:+	MT-ATP8	5486	chrM:8473:+	INCL_NON_REF_SPLICE	YES	15089	82	0	0.07	0.0448	0.0224	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.07	0.0672	FALSE	231	217	16	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	4	2	MT-ND5	1627	chrM:12963:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	4215	857	0	0.01	0.0448	0.0224	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.01	0.0672	FALSE	42	36	7	104	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	AP003900.6--AC011718.2	4	1	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	0	6	1	0.45	0.0448	0.0112	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	HT1376_URINARY_TRACT	0.45	1	0.056	TRUE	0	1	0	21	1	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	3	5	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11934	58	0	0.12	0.0336	0.056	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.12	0.0896	FALSE	231	217	16	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	4	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11068	5	0	0.5	0.0448	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.5	0.056	FALSE	230	193	14	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	4	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11089	58	0	0.08	0.0448	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.08	0.056	FALSE	230	198	14	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	4	1	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7839	58	0	0.08	0.0448	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.08	0.056	FALSE	230	193	14	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	4	1	MT-ND4	1284	chrM:11043:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	13387	0	0	1	0.0448	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	1	0.056	FALSE	231	205	14	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	4	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	NO	11068	0	0	1	0.0448	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	1	0.056	FALSE	230	193	14	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	3	4	MT-ND5	2290	chrM:13626:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3179	0	0	1	0.0336	0.0448	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	1	0.0784	FALSE	43	37	8	105	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	3	4	MT-ND5	2339	chrM:13675:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	3180	0	0	1	0.0336	0.0448	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	1	0.0784	FALSE	43	37	8	105	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	3	4	MT-ND5	2339	chrM:13675:+	MT-ATP8	5910	chrM:8463:+	INCL_NON_REF_SPLICE	YES	3180	3	0	0.7	0.0336	0.0448	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.7	0.0784	FALSE	43	37	8	105	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	3	4	MT-ND5	2404	chrM:13740:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	2981	0	0	1	0.0336	0.0448	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	1	0.0784	FALSE	43	37	8	105	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT1376_URINARY_TRACT	1	1	0.0448	FALSE	499	1288	110	792	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	3	3	MT-ND4	1749	chrM:11508:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	12902	0	0	1	0.0336	0.0336	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	1	0.0672	FALSE	231	217	16	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	3	3	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15	5	0.29	0.55	0.0336	0.0336	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0.29	0.55	0.0672	FALSE	43	37	8	105	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	3	3	MT-ND5	2712	chrM:14048:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20	58	0.23	0.09	0.0336	0.0336	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0.09	0.23	0.0672	FALSE	43	37	8	105	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	3	3	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	3830	1137	0	0.01	0.0336	0.0336	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.01	0.0672	FALSE	43	37	8	105	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	3	3	MT-ND5	2347	chrM:13683:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3052	58	0	0.09	0.0336	0.0336	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.09	0.0672	FALSE	43	37	8	105	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-CO2--MT-ND1	3	2	MT-CO2	1320	chrM:7905:+	MT-ND1	4758	chrM:3380:+	INCL_NON_REF_SPLICE	YES	14079	1	0	0.83	0.0336	0.0224	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HT1376_URINARY_TRACT	0	0.83	0.056	FALSE	12	14	1	5	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15197	3	0	0.62	0.0336	0.0224	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.62	0.056	FALSE	231	217	16	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	15675	764	0	0.01	0.0336	0.0224	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.01	0.056	FALSE	231	217	16	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	15176	0	0	1	0.0336	0.0224	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	1	0.056	FALSE	231	217	16	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14953	58	0	0.08	0.0336	0.0224	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.08	0.056	FALSE	231	217	16	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	3	2	MT-ND5	1828	chrM:13164:+	MT-ATP8	5867	chrM:8420:+	INCL_NON_REF_SPLICE	YES	4127	0	0	1	0.0336	0.0224	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	1	0.056	FALSE	43	37	8	105	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	3	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	14399	1	0	0.8	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.8	0.0448	FALSE	231	205	14	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	3	1	MT-ND4	1170	chrM:10929:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	9017	0	0	1	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	1	0.0448	FALSE	230	193	14	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	3	1	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	11303	0	0	1	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	1	0.0448	FALSE	231	204	14	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	3	1	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	13086	1079	0	0	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0	0.0448	FALSE	231	205	14	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND4--MT-ATP8	3	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	12758	1825	0	0	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0	0.0448	FALSE	231	217	16	283	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	3	1	MT-ND5	1631	chrM:12967:+	MT-ATP8	6006	chrM:8559:+	INCL_NON_REF_SPLICE	YES	4249	656	0	0.01	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.01	0.0448	FALSE	42	36	7	104	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-ND5--MT-ATP8	3	1	MT-ND5	1570	chrM:12906:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3707	5	0	0.44	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT1376_URINARY_TRACT	0	0.44	0.0448	FALSE	42	36	7	104	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MT-TA--MT-TC	3	1	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0.0112	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HT1376_URINARY_TRACT	1	1	0.0448	FALSE	462	80	0	856	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	AP003900.6--AC011718.2	2	4	AP003900.6	2187	chr21:11172043:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0224	0.0448	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	HT1376_URINARY_TRACT	0.86	1	0.0672	TRUE	0	0	0	5	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	MT-TA--MT-TC	3	0	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HT1376_URINARY_TRACT	1	1	0.0336	FALSE	462	80	0	856	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	RP11-476K15.1--CTD-2015H3.2	3	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HT1376_URINARY_TRACT	1	1	0.0336	FALSE	0	46	0	73	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	ATP7B--RP11-141M1.3	2	2	ATP7B	11407	chr13:52531652:-	RP11-141M1.3	35371	chr13:34013861:-	ONLY_REF_SPLICE	YES	16	1	0.2	0.8	0.0224	0.0224	ATP7B->ATPase_copper_transporting_beta,chr13:52506809-52585630:-,RP11-141M1.3->chr13:33929343-34250905:-	HT1376_URINARY_TRACT	0.2	0.8	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	AC002066.1--AC073130.1	2	1	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	6	0	0.33	1	0.0224	0.0112	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	HT1376_URINARY_TRACT	0.33	1	0.0336	FALSE	0	3	0	33	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	GNGT1--AC002076.10	2	1	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0224	0.0112	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	HT1376_URINARY_TRACT	0.75	1	0.0336	FALSE	0	10	0	30	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	GNGT1--AC002076.10	2	1	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0224	0.0112	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	HT1376_URINARY_TRACT	0.75	1	0.0336	FALSE	0	28	0	37	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	DTNBP1--HIVEP1	2	0	DTNBP1	7539	chr6:15615498:-	HIVEP1	22004	chr6:12015759:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	DTNBP1->chr6:15523032-15663289:-,dystrobrevin_binding_protein_1,HIVEP1->Oncogene{Bushman},chr6:12008995-12165232:+,human_immunodeficiency_virus_type_I_enhancer_binding_protein_1	HT1376_URINARY_TRACT	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	GATS--PILRB	2	0	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	HT1376_URINARY_TRACT	1	1	0.0224	TRUE	57	41	2	35	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HT1376_URINARY_TRACT	1	1	0.0224	TRUE	3	14	2	43	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	RNF40--ZNF883	2	0	RNF40	5814	chr16:30777879:+	ZNF883	20551	chr9:115761418:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	RNF40->chr16:30773066-30787628:+,ring_finger_protein_40,ZNF883->chr9:115759495-115774507:-,zinc_finger_protein_883	HT1376_URINARY_TRACT	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HT1376_URINARY_TRACT	1	1	0.0224	FALSE	16	356	14	466	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	RP11-476K15.1--CTD-2015H3.2	2	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HT1376_URINARY_TRACT	1	1	0.0224	FALSE	0	46	0	73	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	RPL22--RILPL1	2	0	RPL22	8153	chr1:6252990:-	RILPL1	19939	chr12:123984083:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22,RILPL1->Rab_interacting_lysosomal_protein-like_1,chr12:123955925-124018265:-	HT1376_URINARY_TRACT	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	TES--CAV1	2	0	TES	1242	chr7:115850788:+	CAV1	15491	chr7:116166579:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	{Klijn_CCL:Lung=1,Head-Neck=1},TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	HT1376_URINARY_TRACT	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	USP7--MBOAT1	1	4	USP7	9328	chr16:9023226:-	MBOAT1	37975	chr6:20153000:-	ONLY_REF_SPLICE	YES	117	171	0.04	0.03	0.0112	0.0448	USP7->Oncogene{Bushman},chr16:8985951-9058371:-,ubiquitin_specific_peptidase_7_(herpes_virus-associated),MBOAT1->chr6:20100935-20212670:-,membrane_bound_O-acyltransferase_domain_containing_1	HT1376_URINARY_TRACT	0.03	0.04	0.056	TRUE	0	0	0	1	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	AC002066.1--AC073130.1	1	2	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0112	0.0224	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	HT1376_URINARY_TRACT	0.6	1	0.0336	FALSE	0	1	1	30	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	CTD-2008L17.1--RP11-456O19.2	1	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	NO	3	0	0.5	1	0.0112	0.0224	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HT1376_URINARY_TRACT	0.5	1	0.0336	FALSE	33	240	4	98	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	ISPD--AC004540.5	1	1	ISPD	3684	chr7:16415717:-	AC004540.5	22490	chr7:26533415:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0112	0.0112	ISPD->chr7:16130817-16460947:-,isoprenoid_synthase_domain_containing,AC004540.5->chr7:26438213-26538594:+	HT1376_URINARY_TRACT	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000724
HT1376_URINARY_TRACT	RAB40C--CAPN15	1	1	RAB40C	2077	chr16:640433:+	CAPN15	25060	chr16:601302:+	ONLY_REF_SPLICE	YES	63	56	0.03	0.03	0.0112	0.0112	LOCAL_REARRANGEMENT:+:[34721],RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+,CAPN15->calpain_15,chr16:577717-604636:+	HT1376_URINARY_TRACT	0.03	0.03	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	TES--MET	1	1	TES	1242	chr7:115850788:+	MET	15989	chr7:116339125:+	ONLY_REF_SPLICE	YES	417	69	0	0.03	0.0112	0.0112	TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HT1376_URINARY_TRACT	0	0.03	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000724
HT1376_URINARY_TRACT	THSD4--SENP8	1	1	THSD4	7149	chr15:71549054:+	SENP8	41840	chr15:72431918:+	ONLY_REF_SPLICE	YES	35	2	0.05	0.5	0.0112	0.0112	THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4,SENP8->SUMO/sentrin_peptidase_family_member,_NEDD8_specific,chr15:72406599-72433311:+	HT1376_URINARY_TRACT	0.05	0.5	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000724
JHH5_LIVER	FTL--MT-CO1	865	1	FTL	1296	chr19:49468853:+	MT-CO1	5895	chrM:6220:+	INCL_NON_REF_SPLICE	NO	13785	19012	0.06	0.04	11.868	0.0137	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH5_LIVER	0.04	0.06	11.8817	FALSE	0	7	0	14	0	FALSE	ACH-000734
JHH5_LIVER	MT-TA--MT-TN	79	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0839	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH5_LIVER	1	1	1.0839	FALSE	369	2501	205	193	0	FALSE	ACH-000734
JHH5_LIVER	TIMM23B--LINC00843	41	9	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5625	0.1235	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHH5_LIVER	1	1	0.686	TRUE	508	994	45	981	0	FALSE	ACH-000734
JHH5_LIVER	MT-TA--MT-TC	32	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.439	0.0686	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHH5_LIVER	1	1	0.5076	FALSE	462	80	0	856	0	FALSE	ACH-000734
JHH5_LIVER	NPM1--ZFP62	24	7	NPM1	11065	chr5:170834778:+	ZFP62	18003	chr5:180278493:-	ONLY_REF_SPLICE	YES	1508	22	0.02	0.58	0.3293	0.096	NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ZFP62->ZFP62_zinc_finger_protein,chr5:180274611-180288286:-	JHH5_LIVER	0.02	0.58	0.4253	TRUE	0	0	0	1	0	FALSE	ACH-000734
JHH5_LIVER	MT-TA--MT-TN	9	57	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.1235	0.7821	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH5_LIVER	1	1	0.9056	FALSE	369	2501	205	193	0	FALSE	ACH-000734
JHH5_LIVER	TIMM23--RP11-464F9.1	23	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	105	2	0.19	0.92	0.3156	0.0137	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JHH5_LIVER	0.19	0.92	0.3293	TRUE	519	3926	326	965	0	FALSE	ACH-000734
JHH5_LIVER	EML1--SETD3	21	4	EML1	5093	chr14:100259880:+	SETD3	47955	chr14:99880271:-	ONLY_REF_SPLICE	YES	2	35	0.93	0.42	0.2881	0.0549	EML1->chr14:100204030-100408397:+,echinoderm_microtubule_associated_protein_like_1,SETD3->SET_domain_containing_3,chr14:99864083-99947216:-	JHH5_LIVER	0.42	0.93	0.343	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	MT-TA--MT-TN	9	38	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1235	0.5214	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH5_LIVER	1	1	0.6449	FALSE	369	2501	205	193	0	FALSE	ACH-000734
JHH5_LIVER	HSPBP1--GRK5	17	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2332	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	JHH5_LIVER	1	1	0.2332	TRUE	1	39	0	134	39	FALSE	ACH-000734
JHH5_LIVER	RP11-680G10.1--GSE1	17	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2332	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHH5_LIVER	1	1	0.2332	TRUE	465	1949	224	605	0	FALSE	ACH-000734
JHH5_LIVER	MT-TA--MT-TN	10	20	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1372	0.2744	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH5_LIVER	1	1	0.4116	FALSE	369	2501	205	193	0	FALSE	ACH-000734
JHH5_LIVER	MT-TA--MT-TN	6	31	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0823	0.4253	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH5_LIVER	1	1	0.5076	FALSE	369	2501	205	193	0	FALSE	ACH-000734
JHH5_LIVER	SERPINA1--MT-ATP8	13	2	SERPINA1	5164	chr14:94849438:-	MT-ATP8	14106	chrM:8442:+	INCL_NON_REF_SPLICE	YES	4360	0	0	1	0.1784	0.0274	SERPINA1->Oncogene{Bushman},chr14:94843084-94857030:-,serpin_family_A_member_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH5_LIVER	0	1	0.2058	FALSE	1	1	0	1	0	FALSE	ACH-000734
JHH5_LIVER	MT-ND6--MT-TE	12	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1646	0.0412	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH5_LIVER	1	1	0.2058	FALSE	499	1288	110	792	0	FALSE	ACH-000734
JHH5_LIVER	RP11-444D3.1--SOX5	11	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	5	1	0.74	0.1509	0.0412	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	JHH5_LIVER	0.74	1	0.1921	TRUE	477	1352	189	275	0	FALSE	ACH-000734
JHH5_LIVER	CTD-2152M20.2--GOLPH3	11	1	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	35	1	0.26	0.1509	0.0137	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	JHH5_LIVER	0.26	1	0.1646	TRUE	10	26	2	24	0	FALSE	ACH-000734
JHH5_LIVER	MT-ND4--MT-ATP8	11	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1509	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH5_LIVER	1	1	0.1509	FALSE	230	198	14	283	0	FALSE	ACH-000734
JHH5_LIVER	MT-TA--MT-TN	4	26	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0.3567	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH5_LIVER	1	1	0.4116	FALSE	369	2501	205	193	0	FALSE	ACH-000734
JHH5_LIVER	MT-ND4--MT-ATP8	10	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1372	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH5_LIVER	1	1	0.1372	FALSE	230	193	14	283	0	FALSE	ACH-000734
JHH5_LIVER	EML1--SETD3	9	0	EML1	5093	chr14:100259880:+	SETD3	53023	chr14:99872927:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1235	0	EML1->chr14:100204030-100408397:+,echinoderm_microtubule_associated_protein_like_1,SETD3->SET_domain_containing_3,chr14:99864083-99947216:-	JHH5_LIVER	1	1	0.1235	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	RP11-680G10.1--GSE1	9	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1235	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHH5_LIVER	1	1	0.1235	TRUE	458	1351	185	561	0	FALSE	ACH-000734
JHH5_LIVER	C6orf141--ZNF529	8	0	C6orf141	5089	chr6:49522870:+	ZNF529	13907	chr19:37073608:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1098	0	GTEx_FI:{Brain=[count:22=pct:3.3],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Breast=[count:1=pct:0.9]},C6orf141->chr6:49518113-49529620:+,chromosome_6_open_reading_frame_141,ZNF529->chr19:37025676-37096178:-,zinc_finger_protein_529	JHH5_LIVER	1	1	0.1098	TRUE	23	15	0	4	0	FALSE	ACH-000734
JHH5_LIVER	MT-ATP6--MT-CO1	7	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	8608	23107	0	0	0.096	0.0274	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH5_LIVER	0	0	0.1234	FALSE	183	104	9	328	0	FALSE	ACH-000734
JHH5_LIVER	MT-ATP6--MT-CO1	7	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8675	23747	0	0	0.096	0.0274	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH5_LIVER	0	0	0.1234	FALSE	183	104	9	328	0	FALSE	ACH-000734
JHH5_LIVER	MT-TA--MT-TC	7	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.096	0.0274	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHH5_LIVER	1	1	0.1234	FALSE	462	80	0	856	0	FALSE	ACH-000734
JHH5_LIVER	FTL--MT-CO1	7	1	FTL	1122	chr19:49468679:+	MT-CO1	6221	chrM:6546:+	INCL_NON_REF_SPLICE	YES	1124	23537	0.01	0	0.096	0.0137	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH5_LIVER	0	0.01	0.1097	FALSE	0	7	0	14	0	FALSE	ACH-000734
JHH5_LIVER	NDUFS2--SPOP	7	0	NDUFS2	12356	chr1:161184063:+	SPOP	15646	chr17:47755429:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.096	0	NDUFS2->NADH:ubiquinone_oxidoreductase_core_subunit_S2,chr1:161166894-161184185:+,SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein	JHH5_LIVER	1	1	0.096	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	RP11-96H19.1--RP11-446N19.1	6	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.9	0.0823	0.0412	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHH5_LIVER	0.9	1	0.1235	FALSE	515	4851	409	746	0	FALSE	ACH-000734
JHH5_LIVER	FTL--MT-CO1	6	1	FTL	1129	chr19:49468686:+	MT-CO1	6014	chrM:6339:+	INCL_NON_REF_SPLICE	YES	3531	21268	0	0	0.0823	0.0137	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH5_LIVER	0	0	0.096	FALSE	0	7	0	14	0	FALSE	ACH-000734
JHH5_LIVER	MT-TA--MT-TN	6	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0823	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH5_LIVER	1	1	0.0823	FALSE	369	2501	205	193	0	FALSE	ACH-000734
JHH5_LIVER	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0823	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHH5_LIVER	1	1	0.0823	FALSE	292	1546	117	613	0	FALSE	ACH-000734
JHH5_LIVER	FTL--FN1	5	3	FTL	2398	chr19:49469955:+	FN1	5707	chr2:216300767:-	INCL_NON_REF_SPLICE	YES	6673	2	0	0.8	0.0686	0.0412	GTEx&tcga_normals:21/3694=0.57%,GTEx:0.11%,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	JHH5_LIVER	0	0.8	0.1098	TRUE	0	0	0	1	0	FALSE	ACH-000734
JHH5_LIVER	MT-ND6--MT-TE	3	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0.1509	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH5_LIVER	1	1	0.1921	FALSE	499	1288	110	792	0	FALSE	ACH-000734
JHH5_LIVER	MT-ND6--MT-TE	5	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0.0412	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH5_LIVER	1	1	0.1098	FALSE	499	1288	110	792	0	FALSE	ACH-000734
JHH5_LIVER	MT-ND4--MT-ATP8	5	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8949	0	0	1	0.0686	0.0137	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH5_LIVER	0	1	0.0823	FALSE	231	205	14	283	0	FALSE	ACH-000734
JHH5_LIVER	REPS1--ELMO1	5	1	REPS1	1732	chr6:139308667:-	ELMO1	57126	chr7:37136332:-	ONLY_REF_SPLICE	YES	9	3	0.4	0.67	0.0686	0.0137	{Klijn_CCL:Liver=1},REPS1->RALBP1_associated_Eps_domain_containing_1,chr6:139224630-139309398:-,ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1	JHH5_LIVER	0.4	0.67	0.0823	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	MT-ND4--MT-ATP8	5	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH5_LIVER	1	1	0.0686	FALSE	231	204	14	283	0	FALSE	ACH-000734
JHH5_LIVER	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JHH5_LIVER	1	1	0.0686	TRUE	0	0	0	434	0	FALSE	ACH-000734
JHH5_LIVER	WHSC1L1--RP11-417J8.6	4	2	WHSC1L1	18969	chr8:38172165:-	RP11-417J8.6	58915	chr1:142623105:-	ONLY_REF_SPLICE	YES	11	1	0.35	0.86	0.0549	0.0274	WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-,RP11-417J8.6->chr1:142620645-142729967:-	JHH5_LIVER	0.35	0.86	0.0823	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	RP11-319G9.5--WWOX	4	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	4	1	0.56	0.0549	0.0137	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	JHH5_LIVER	0.56	1	0.0686	FALSE	154	425	28	76	0	FALSE	ACH-000734
JHH5_LIVER	SETD3--EML1	4	1	SETD3	9427	chr14:99879288:-	EML1	30334	chr14:100317190:+	ONLY_REF_SPLICE	YES	30	3	0.14	0.62	0.0549	0.0137	SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,EML1->chr14:100204030-100408397:+,echinoderm_microtubule_associated_protein_like_1	JHH5_LIVER	0.14	0.62	0.0686	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	UTRN--HECW1	4	1	UTRN	55556	chr6:144898424:+	HECW1	100535	chr7:43400485:+	ONLY_REF_SPLICE	YES	39	6	0.11	0.45	0.0549	0.0137	UTRN->chr6:144606837-145174170:+,utrophin,HECW1->HECT,_C2_and_WW_domain_containing_E3_ubiquitin_protein_ligase_1,chr7:43152198-43605600:+	JHH5_LIVER	0.11	0.45	0.0686	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH5_LIVER	1	1	0.0549	FALSE	499	1288	110	792	0	FALSE	ACH-000734
JHH5_LIVER	MT-TA--MT-TN	4	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH5_LIVER	1	1	0.0549	FALSE	369	2501	205	193	0	FALSE	ACH-000734
JHH5_LIVER	MT-TA--MT-TN	4	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH5_LIVER	1	1	0.0549	FALSE	369	2501	205	193	0	FALSE	ACH-000734
JHH5_LIVER	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH5_LIVER	1	1	0.0549	FALSE	369	2501	205	193	0	FALSE	ACH-000734
JHH5_LIVER	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0412	0.0549	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHH5_LIVER	1	1	0.0961	FALSE	407	2205	196	549	0	FALSE	ACH-000734
JHH5_LIVER	GUSB--CCDC129	3	3	GUSB	9080	chr7:65432718:-	CCDC129	28830	chr7:31682296:+	ONLY_REF_SPLICE	YES	116	0	0.05	1	0.0412	0.0412	{Klijn_CCL:Liver=1},GUSB->chr7:65425671-65447301:-,glucuronidase_beta,CCDC129->chr7:31553704-31698334:+,coiled-coil_domain_containing_129	JHH5_LIVER	0.05	1	0.0824	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	MT-ATP6--MT-CO1	3	3	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	8078	21689	0	0	0.0412	0.0412	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH5_LIVER	0	0	0.0824	FALSE	183	104	9	328	0	FALSE	ACH-000734
JHH5_LIVER	MT-ND4--MT-ATP8	3	3	MT-ND4	1528	chrM:11287:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	NO	11691	0	0	1	0.0412	0.0412	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH5_LIVER	0	1	0.0824	FALSE	231	217	16	283	0	FALSE	ACH-000734
JHH5_LIVER	MT-ATP6--MT-CO1	3	2	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2729	24015	0	0	0.0412	0.0274	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH5_LIVER	0	0	0.0686	FALSE	183	104	9	328	0	FALSE	ACH-000734
JHH5_LIVER	MT-ND4--MT-ATP8	3	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	9023	0	0	1	0.0412	0.0274	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH5_LIVER	0	1	0.0686	FALSE	231	217	16	283	0	FALSE	ACH-000734
JHH5_LIVER	SETD3--EML1	3	2	SETD3	9427	chr14:99879288:-	EML1	29605	chr14:100316461:+	ONLY_REF_SPLICE	YES	30	3	0.14	0.62	0.0412	0.0274	SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,EML1->chr14:100204030-100408397:+,echinoderm_microtubule_associated_protein_like_1	JHH5_LIVER	0.14	0.62	0.0686	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	MT-ND4--MT-ATP8	3	1	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	4594	0	0	1	0.0412	0.0137	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH5_LIVER	0	1	0.0549	FALSE	230	193	14	283	0	FALSE	ACH-000734
JHH5_LIVER	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH5_LIVER	1	1	0.0412	FALSE	499	1288	110	792	0	FALSE	ACH-000734
JHH5_LIVER	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH5_LIVER	1	1	0.0412	FALSE	369	2501	205	193	0	FALSE	ACH-000734
JHH5_LIVER	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JHH5_LIVER	1	1	0.0412	TRUE	0	0	0	434	0	FALSE	ACH-000734
JHH5_LIVER	RP11-141M1.3--STARD13	3	0	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0412	0	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	JHH5_LIVER	1	1	0.0412	FALSE	141	264	50	91	0	FALSE	ACH-000734
JHH5_LIVER	SETD3--EML1	3	0	SETD3	1152	chr14:99947065:-	EML1	30334	chr14:100317190:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0412	0	SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,EML1->chr14:100204030-100408397:+,echinoderm_microtubule_associated_protein_like_1	JHH5_LIVER	1	1	0.0412	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	ACBD6--AKIRIN1	2	0	ACBD6	4072	chr1:180461404:-	AKIRIN1	18562	chr1:39463843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-,AKIRIN1->akirin_1,chr1:39456895-39471731:+	JHH5_LIVER	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	C17orf76-AS1--PTCD3	2	0	C17orf76-AS1	1593	chr17:16342728:+	PTCD3	33495	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	JHH5_LIVER	1	1	0.0274	TRUE	0	3	0	8	0	TRUE	ACH-000734
JHH5_LIVER	DKC1--C20orf24	2	0	DKC1	1226	chrX:153991256:+	C20orf24	17299	chr20:35236118:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	DKC1->Oncogene{Bushman},chrX:153991031-154005964:+,dyskerin_pseudouridine_synthase_1,C20orf24->chr20:35234137-35240960:+,chromosome_20_open_reading_frame_24	JHH5_LIVER	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	TNFRSF1A--KLHDC4	2	0	TNFRSF1A	1339	chr12:6450942:-	KLHDC4	26980	chr16:87748179:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	TNFRSF1A->Oncogene{Bushman},chr12:6437923-6451280:-,tumor_necrosis_factor_receptor_superfamily_member_1A,KLHDC4->chr16:87730091-87799598:-,kelch_domain_containing_4	JHH5_LIVER	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000734
JHH5_LIVER	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	6	0	0.4	1	0.0137	0.0412	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHH5_LIVER	0.4	1	0.0549	FALSE	164	806	69	479	0	FALSE	ACH-000734
JHH5_LIVER	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	5	1	0.44	0.0137	0.0412	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	JHH5_LIVER	0.44	1	0.0549	TRUE	274	363	69	150	0	FALSE	ACH-000734
JHH5_LIVER	GPR126--VTA1	1	1	GPR126	8270	chr6:142704980:+	VTA1	41643	chr6:142519576:+	ONLY_REF_SPLICE	NO	148	139	0.01	0.01	0.0137	0.0137	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	JHH5_LIVER	0.01	0.01	0.0274	FALSE	0	0	0	1	0	FALSE	ACH-000734
JHH5_LIVER	NDUFA4--PHF14	1	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	489	64	0	0.03	0.0137	0.0137	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	JHH5_LIVER	0	0.03	0.0274	FALSE	19	32	3	60	0	FALSE	ACH-000734
JHH5_LIVER	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0137	0.0137	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHH5_LIVER	1	1	0.0274	FALSE	416	2512	207	587	0	FALSE	ACH-000734
JHH5_LIVER	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	1	5	0.67	0.29	0.0137	0.0137	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	JHH5_LIVER	0.29	0.67	0.0274	TRUE	16	11	2	20	0	FALSE	ACH-000734
JHH5_LIVER	SAMD12--MAL2	1	1	SAMD12	1192	chr8:119634043:-	MAL2	25144	chr8:120233827:+	ONLY_REF_SPLICE	YES	3	121	0.4	0.02	0.0137	0.0137	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MAL2->chr8:120177273-120257913:+,mal,_T-cell_differentiation_protein_2_(gene/pseudogene)	JHH5_LIVER	0.02	0.4	0.0274	TRUE	0	1	0	2	1	FALSE	ACH-000734
JHH5_LIVER	VWCE--DDB1	1	1	VWCE	1497	chr11:61062400:-	DDB1	37754	chr11:61084039:-	ONLY_REF_SPLICE	YES	15	539	0.12	0	0.0137	0.0137	LOCAL_REARRANGEMENT:-:[4027],VWCE->chr11:61025762-61062896:-,von_Willebrand_factor_C_and_EGF_domains,DDB1->chr11:61066923-61110068:-,damage_specific_DNA_binding_protein_1	JHH5_LIVER	0	0.12	0.0274	FALSE	0	0	0	1	0	FALSE	ACH-000734
JHH5_LIVER	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1270	68	0	0.03	0.0137	0.0137	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	JHH5_LIVER	0	0.03	0.0274	FALSE	6	50	7	115	0	FALSE	ACH-000734
HCC2935_LUNG	TIMM23B--LINC00843	132	39	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.4456	0.4271	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC2935_LUNG	0.99	1	1.8727	TRUE	508	994	45	981	0	FALSE	ACH-000150
HCC2935_LUNG	MT-TA--MT-TN	118	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2923	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2935_LUNG	1	1	1.2923	FALSE	369	2501	205	193	0	FALSE	ACH-000150
HCC2935_LUNG	SREBF2--RP5-1121H13.4	103	17	SREBF2	1254	chr22:42229362:+	RP5-1121H13.4	29390	chr20:40619786:+	INCL_NON_REF_SPLICE	YES	158	0	0.43	1	1.128	0.1862	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,RP5-1121H13.4->chr20:40619780-40692609:+	HCC2935_LUNG	0.43	1	1.3142	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	TIMM23--RP11-464F9.1	72	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	208	4	0.28	0.95	0.7885	0.0767	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC2935_LUNG	0.28	0.95	0.8652	TRUE	519	3926	326	965	0	FALSE	ACH-000150
HCC2935_LUNG	OR51S1--TP53I11	70	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7666	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HCC2935_LUNG	1	1	0.7666	TRUE	402	216	10	229	0	FALSE	ACH-000150
HCC2935_LUNG	MT-TA--MT-TC	67	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7338	0.1095	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2935_LUNG	1	1	0.8433	FALSE	462	80	0	856	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	41	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	62	3	0.42	0.94	0.449	0.0329	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.42	0.94	0.4819	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-TA--MT-TN	17	88	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1862	0.9637	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2935_LUNG	1	1	1.1499	FALSE	369	2501	205	193	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	10	90	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	5	0.95	0.95	0.1095	0.9857	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.95	0.95	1.0952	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	5	104	MT-CO3	1459	chrM:9665:+	MT-ATP6	4899	chrM:8641:+	INCL_NON_REF_SPLICE	YES	5	1	0.96	0.99	0.0548	1.139	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.96	0.99	1.1938	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	PTPRT--RP5-821D11.7	26	17	PTPRT	39987	chr20:40707892:-	RP5-821D11.7	50795	chr22:42229362:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.2847	0.1862	PTPRT->Oncogene{Bushman},chr20:40701392-41818610:-,protein_tyrosine_phosphatase,_receptor_type_T,RP5-821D11.7->chr22:42227219-42230669:-	HCC2935_LUNG	0.98	1	0.4709	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	4	103	MT-CO3	1390	chrM:9596:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	5	0	0.96	1	0.0438	1.128	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.96	1	1.1718	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-TA--MT-TN	11	68	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1205	0.7447	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2935_LUNG	1	1	0.8652	FALSE	369	2501	205	193	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	5	91	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	5	0.95	0.95	0.0548	0.9966	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.95	0.95	1.0514	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	4	95	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	5	40	0.95	0.71	0.0438	1.0404	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.71	0.95	1.0842	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	4	91	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	7	4	0.93	0.96	0.0438	0.9966	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.93	0.96	1.0404	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	4	86	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	2	25	0.98	0.78	0.0438	0.9418	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.78	0.98	0.9856	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	4	86	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	2	4	0.98	0.96	0.0438	0.9418	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.96	0.98	0.9856	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-TA--MT-TN	25	1	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2738	0.011	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2935_LUNG	1	1	0.2848	FALSE	369	2501	205	193	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	4	84	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	2	4	0.98	0.96	0.0438	0.9199	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.96	0.98	0.9637	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	LINC00152--AC093616.4	21	15	LINC00152	14196	chr2:87906288:+	AC093616.4	17233	chr2:88000503:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.23	0.1643	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	HCC2935_LUNG	1	1	0.3943	FALSE	0	0	0	14	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	3	85	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	3	4	0.97	0.96	0.0329	0.9309	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.96	0.97	0.9638	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	3	85	MT-CO3	1103	chrM:9309:+	MT-ATP6	5361	chrM:9103:+	INCL_NON_REF_SPLICE	YES	3	2	0.97	0.98	0.0329	0.9309	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.97	0.98	0.9638	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	PTPRT--RP5-821D11.7	19	20	PTPRT	39990	chr20:40707889:-	RP5-821D11.7	50795	chr22:42229362:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2081	0.219	PTPRT->Oncogene{Bushman},chr20:40701392-41818610:-,protein_tyrosine_phosphatase,_receptor_type_T,RP5-821D11.7->chr22:42227219-42230669:-	HCC2935_LUNG	0.97	1	0.4271	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	MT-ND4--MT-ATP8	23	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	12778	4	0	0.86	0.2519	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2935_LUNG	0	0.86	0.2629	FALSE	230	193	14	283	0	FALSE	ACH-000150
HCC2935_LUNG	MT-TA--MT-TN	22	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2409	0.011	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2935_LUNG	1	1	0.2519	FALSE	369	2501	205	193	0	FALSE	ACH-000150
HCC2935_LUNG	MT-TA--MT-TN	16	25	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1752	0.2738	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2935_LUNG	1	1	0.449	FALSE	369	2501	205	193	0	FALSE	ACH-000150
HCC2935_LUNG	RP11-123O10.4--GRIP1	21	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.23	0.0548	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC2935_LUNG	1	1	0.2848	FALSE	416	2512	207	587	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND6--MT-TE	21	4	MT-ND6	1051	chrM:14623:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.23	0.0438	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2935_LUNG	0.96	1	0.2738	FALSE	499	1288	110	792	0	FALSE	ACH-000150
HCC2935_LUNG	MT-TA--MT-TN	10	44	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1095	0.4819	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2935_LUNG	1	1	0.5914	FALSE	369	2501	205	193	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	4	64	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	2	1	0.97	0.99	0.0438	0.7009	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.97	0.99	0.7447	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	3	68	MT-CO3	1061	chrM:9267:+	MT-ATP6	5343	chrM:9085:+	INCL_NON_REF_SPLICE	YES	2	4	0.97	0.95	0.0329	0.7447	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.95	0.97	0.7776	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	5	54	MT-CO3	1036	chrM:9242:+	MT-ATP6	4744	chrM:8486:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0548	0.5914	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.98	1	0.6462	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	17	4	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.1862	0.0438	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.81	1	0.23	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	3	51	MT-CO3	1035	chrM:9241:+	MT-ATP6	5316	chrM:9058:+	INCL_NON_REF_SPLICE	YES	1	4	0.98	0.93	0.0329	0.5585	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.93	0.98	0.5914	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	6	39	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.94	0.0657	0.4271	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.94	1	0.4928	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	LARGE--XPNPEP3	15	2	LARGE	15553	chr22:33960834:-	XPNPEP3	42974	chr22:41265003:+	ONLY_REF_SPLICE	YES	18	53	0.49	0.24	0.1643	0.0219	{Klijn_CCL:Lung=1},LARGE->chr22:33558212-34318829:-,like-glycosyltransferase,XPNPEP3->X-prolyl_aminopeptidase_3,_mitochondrial,chr22:41253081-41363838:+	HCC2935_LUNG	0.24	0.49	0.1862	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	MT-ND6--MT-TE	13	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.1424	0.1095	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2935_LUNG	0.85	1	0.2519	FALSE	499	1288	110	792	0	FALSE	ACH-000150
HCC2935_LUNG	MT-TA--MT-TN	7	33	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0767	0.3614	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2935_LUNG	1	1	0.4381	FALSE	369	2501	205	193	0	FALSE	ACH-000150
HCC2935_LUNG	MT-TA--MT-TN	3	49	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0.5366	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2935_LUNG	1	1	0.5695	FALSE	369	2501	205	193	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	13	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	62	2	0.21	0.89	0.1424	0.0329	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.21	0.89	0.1753	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	3	40	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.9	0.0329	0.4381	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.9	1	0.471	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	7	23	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0767	0.2519	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.94	1	0.3286	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	11	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	56	2	0.2	0.88	0.1205	0.0329	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.2	0.88	0.1534	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND4--MT-ATP8	11	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15140	6	0	0.67	0.1205	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2935_LUNG	0	0.67	0.1315	FALSE	231	205	14	283	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	4	28	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	5	0	0.86	1	0.0438	0.3066	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.86	1	0.3504	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-TA--MT-TC	8	12	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0876	0.1314	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2935_LUNG	1	1	0.219	FALSE	462	80	0	856	0	FALSE	ACH-000150
HCC2935_LUNG	NRIP1--AF127936.7	10	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.1095	0.0329	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC2935_LUNG	0.81	1	0.1424	FALSE	292	1546	117	613	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	3	30	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0329	0.3286	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.94	1	0.3615	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	10	1	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	50	2	0.18	0.85	0.1095	0.011	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.18	0.85	0.1205	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	RP11-96H19.1--RP11-446N19.1	8	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.0876	0.0986	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC2935_LUNG	0.94	1	0.1862	FALSE	515	4851	409	746	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	10	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1095	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	1	1	0.1095	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	9	3	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	63	2	0.16	0.86	0.0986	0.0329	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.16	0.86	0.1315	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND4--MT-ATP8	9	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14498	6	0	0.67	0.0986	0.0329	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2935_LUNG	0	0.67	0.1315	FALSE	231	217	16	283	0	FALSE	ACH-000150
HCC2935_LUNG	MT-TA--MT-TC	7	11	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0767	0.1205	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2935_LUNG	1	1	0.1972	FALSE	462	80	0	856	0	FALSE	ACH-000150
HCC2935_LUNG	MT-TA--MT-TC	9	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0986	0.011	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2935_LUNG	1	1	0.1096	FALSE	462	80	0	856	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND6--MT-TE	4	20	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.0438	0.219	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2935_LUNG	0.86	1	0.2628	FALSE	499	1288	110	792	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND4--MT-ATP8	7	6	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13026	64	0	0.17	0.0767	0.0657	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2935_LUNG	0	0.17	0.1424	FALSE	231	217	16	283	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	8	1	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	29	2	0.24	0.82	0.0876	0.011	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.24	0.82	0.0986	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	5	13	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	5	0	0.78	1	0.0548	0.1424	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.78	1	0.1972	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	NRIP1--AF127936.7	7	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	24	0	0.31	1	0.0767	0.0438	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC2935_LUNG	0.31	1	0.1205	FALSE	125	705	46	456	0	FALSE	ACH-000150
HCC2935_LUNG	RP11-96H19.1--RP11-446N19.1	5	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0548	0.1205	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC2935_LUNG	1	1	0.1753	FALSE	407	2205	196	549	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	3	18	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0329	0.1971	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.88	1	0.23	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	7	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	51	2	0.14	0.8	0.0767	0.011	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.14	0.8	0.0877	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0767	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC2935_LUNG	1	1	0.0767	FALSE	13	9	0	364	0	FALSE	ACH-000150
HCC2935_LUNG	MT-TA--MT-TN	7	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0767	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2935_LUNG	1	1	0.0767	FALSE	369	2501	205	193	0	FALSE	ACH-000150
HCC2935_LUNG	VTI1A--RP11-57H14.3	7	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0767	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HCC2935_LUNG	1	1	0.0767	FALSE	272	151	14	158	0	FALSE	ACH-000150
HCC2935_LUNG	XXbac-BPG252P9.9--TUBBP2	7	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0767	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HCC2935_LUNG	1	1	0.0767	TRUE	0	1	0	48	1	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	4	11	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	7	0	0.68	1	0.0438	0.1205	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.68	1	0.1643	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND4--MT-ATP8	5	6	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2257	64	0	0.15	0.0548	0.0657	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2935_LUNG	0	0.15	0.1205	FALSE	216	209	16	281	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	6	0	MT-ATP6	1098	chrM:8624:+	MT-CO2	4969	chrM:7873:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0657	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	1	1	0.0657	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	5	4	MT-ATP6	1572	chrM:9098:+	MT-CO2	4969	chrM:7873:+	INCL_NON_REF_SPLICE	YES	1	14	0.9	0.39	0.0548	0.0438	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.39	0.9	0.0986	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	C15orf57--CBX3	5	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	51	36	0.14	0.18	0.0548	0.0329	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC2935_LUNG	0.14	0.18	0.0877	TRUE	267	562	48	632	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND4--MT-ATP8	5	3	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	14357	0	0	1	0.0548	0.0329	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2935_LUNG	0	1	0.0877	FALSE	231	217	16	283	0	FALSE	ACH-000150
HCC2935_LUNG	RP11-120D5.1--MID1	5	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	134	0.8	0.06	0.0548	0.0329	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC2935_LUNG	0.06	0.8	0.0877	FALSE	16	356	14	466	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	4	6	MT-ATP6	1544	chrM:9070:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	1	2	0.91	0.83	0.0438	0.0657	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.83	0.91	0.1095	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	4	6	MT-ATP6	1575	chrM:9101:+	MT-CO2	4747	chrM:7651:+	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0438	0.0657	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.91	1	0.1095	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	16575	1	0	0.88	0.0548	0.0219	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2935_LUNG	0	0.88	0.0767	FALSE	231	205	14	283	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	5	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	NO	28	2	0.18	0.75	0.0548	0.011	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.18	0.75	0.0658	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND4--MT-ATP8	5	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12778	6	0	0.5	0.0548	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2935_LUNG	0	0.5	0.0658	FALSE	230	198	14	283	0	FALSE	ACH-000150
HCC2935_LUNG	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC2935_LUNG	1	1	0.0548	FALSE	13	9	0	364	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	4	4	MT-ATP6	1218	chrM:8744:+	MT-CO2	4928	chrM:7832:+	INCL_NON_REF_SPLICE	YES	67	12	0.11	0.4	0.0438	0.0438	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.11	0.4	0.0876	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	4	4	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	7	0	0.53	1	0.0438	0.0438	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	0.53	1	0.0876	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2935_LUNG	1	1	0.0548	FALSE	231	204	14	283	0	FALSE	ACH-000150
HCC2935_LUNG	MT-TA--MT-TN	5	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2935_LUNG	1	1	0.0548	FALSE	369	2501	205	193	0	FALSE	ACH-000150
HCC2935_LUNG	PIGT--MT-CO3	5	0	PIGT	1184	chr20:44044900:+	MT-CO3	11739	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	PIGT->chr20:44044717-44054884:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_T,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HCC2935_LUNG	1	1	0.0548	FALSE	0	0	0	5	0	FALSE	ACH-000150
HCC2935_LUNG	PRSS8--MT-ND5	5	0	PRSS8	3906	chr16:31144178:-	MT-ND5	9045	chrM:13053:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	PRSS8->ArcherDX_panel,FoundationOne_panel,chr16:31142756-31147083:-,protease,_serine_8,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HCC2935_LUNG	1	1	0.0548	FALSE	0	0	0	1	0	FALSE	ACH-000150
HCC2935_LUNG	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2935_LUNG	1	1	0.0548	FALSE	0	0	0	189	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	4	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	62	2	0.1	0.78	0.0438	0.0329	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.1	0.78	0.0767	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	4	3	MT-ATP6	1174	chrM:8700:+	MT-CO2	4986	chrM:7890:+	INCL_NON_REF_SPLICE	YES	63	12	0.1	0.37	0.0438	0.0329	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.1	0.37	0.0767	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	4	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	62	2	0.1	0.78	0.0438	0.0329	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.1	0.78	0.0767	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND4--MT-ATP8	4	3	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	14255	0	0	1	0.0438	0.0329	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2935_LUNG	0	1	0.0767	FALSE	231	217	16	283	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND4--MT-ATP8	4	3	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	14306	0	0	1	0.0438	0.0329	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2935_LUNG	0	1	0.0767	FALSE	231	217	16	283	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	3	6	MT-ATP6	1408	chrM:8934:+	MT-CO2	4720	chrM:7624:+	INCL_NON_REF_SPLICE	NO	53	0	0.15	1	0.0329	0.0657	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.15	1	0.0986	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	4	1	MT-ATP6	1111	chrM:8637:+	MT-CO2	4975	chrM:7879:+	INCL_NON_REF_SPLICE	YES	29	13	0.15	0.28	0.0438	0.011	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.15	0.28	0.0548	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	14306	0	0	1	0.0329	0.0548	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2935_LUNG	0	1	0.0877	FALSE	231	217	16	283	0	FALSE	ACH-000150
HCC2935_LUNG	NRIP1--AF127936.7	2	9	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	29	0	0.28	1	0.0219	0.0986	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC2935_LUNG	0.28	1	0.1205	FALSE	164	806	69	479	0	FALSE	ACH-000150
HCC2935_LUNG	GGT1--RBFOX2	4	0	GGT1	13891	chr22:25019883:+	RBFOX2	27854	chr22:36177793:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0438	0	GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1,RBFOX2->RNA_binding_protein,_fox-1_homolog_2,chr22:36134783-36424473:-	HCC2935_LUNG	1	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	RP11-96H19.1--RP11-446N19.1	1	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.011	0.1314	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC2935_LUNG	1	1	0.1424	FALSE	275	511	55	178	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	3	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	62	2	0.09	0.75	0.0329	0.0329	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.09	0.75	0.0658	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1294	chrM:11053:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	16111	3	0	0.62	0.0329	0.0219	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2935_LUNG	0	0.62	0.0548	FALSE	231	205	14	283	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	18782	201	0	0.02	0.0329	0.0219	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2935_LUNG	0	0.02	0.0548	FALSE	231	217	16	283	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17373	64	0	0.07	0.0329	0.0219	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2935_LUNG	0	0.07	0.0548	FALSE	231	217	16	283	0	FALSE	ACH-000150
HCC2935_LUNG	PTPRT--RP5-821D11.7	3	2	PTPRT	30578	chr20:40735441:-	RP5-821D11.7	50795	chr22:42229362:-	INCL_NON_REF_SPLICE	YES	6	0	0.45	1	0.0329	0.0219	PTPRT->Oncogene{Bushman},chr20:40701392-41818610:-,protein_tyrosine_phosphatase,_receptor_type_T,RP5-821D11.7->chr22:42227219-42230669:-	HCC2935_LUNG	0.45	1	0.0548	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	3	1	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	52	2	0.07	0.67	0.0329	0.011	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.07	0.67	0.0439	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	3	1	MT-ATP6	1147	chrM:8673:+	MT-CO2	4970	chrM:7874:+	INCL_NON_REF_SPLICE	YES	57	14	0.07	0.22	0.0329	0.011	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.07	0.22	0.0439	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	28	2	0.12	0.67	0.0329	0.011	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	0.12	0.67	0.0439	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12851	64	0	0.06	0.0329	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2935_LUNG	0	0.06	0.0439	FALSE	230	198	14	283	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1104	chrM:10863:+	MT-ATP8	5444	chrM:8431:+	INCL_NON_REF_SPLICE	NO	6966	0	0	1	0.0329	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2935_LUNG	0	1	0.0439	FALSE	230	193	14	283	0	FALSE	ACH-000150
HCC2935_LUNG	NRIP1--AF127936.7	3	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	24	6	0.14	0.4	0.0329	0.011	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC2935_LUNG	0.14	0.4	0.0439	FALSE	7	44	2	41	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	3	0	MT-ATP6	1080	chrM:8606:+	MT-CO2	4962	chrM:7866:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	1	1	0.0329	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-ATP6--MT-CO2	3	0	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2935_LUNG	1	1	0.0329	FALSE	59	21	0	114	0	FALSE	ACH-000150
HCC2935_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2935_LUNG	1	1	0.0329	FALSE	189	492	56	216	0	FALSE	ACH-000150
HCC2935_LUNG	CLDN12--ANKIB1	2	0	CLDN12	4834	chr7:90034922:+	ANKIB1	26635	chr7:91924203:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	CLDN12->chr7:90013035-90142716:+,claudin_12,ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	DNAJC25--UGCG	2	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	HCC2935_LUNG	1	1	0.0219	TRUE	50	73	10	50	0	FALSE	ACH-000150
HCC2935_LUNG	GGT1--RBFOX2	2	0	GGT1	13891	chr22:25019883:+	RBFOX2	27857	chr22:36177790:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1,RBFOX2->RNA_binding_protein,_fox-1_homolog_2,chr22:36134783-36424473:-	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	MED6--SIPA1L1	2	0	MED6	8751	chr14:71051534:-	SIPA1L1	18524	chr14:71880665:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	MED6->chr14:71047974-71067384:-,mediator_complex_subunit_6,SIPA1L1->chr14:71787166-72207946:+,signal_induced_proliferation_associated_1_like_1	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	OSBPL1A--DPF2	2	0	OSBPL1A	5132	chr18:21946856:-	DPF2	46206	chr11:65111216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A,DPF2->chr11:65101225-65120720:+,double_PHD_fingers_2	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	PLA2G4A--C1orf27	2	0	PLA2G4A	2185	chr1:186823519:+	C1orf27	34249	chr1:186375215:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	PLA2G4A->Oncogene{Bushman},chr1:186798085-186958113:+,phospholipase_A2_group_IVA,C1orf27->chr1:186344890-186390510:+,chromosome_1_open_reading_frame_27	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	PRODH--PLXNB2	2	0	PRODH	3815	chr22:18918503:-	PLXNB2	22619	chr22:50733207:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	PRODH->chr22:18900294-18924066:-,proline_dehydrogenase_1,PLXNB2->chr22:50713408-50746056:-,plexin_B2	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	R3HDM1--DHRS9	2	0	R3HDM1	1179	chr2:136289203:+	DHRS9	48341	chr2:169948300:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+,DHRS9->chr2:169921299-169952677:+,dehydrogenase/reductase_(SDR_family)_member_9	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	TUBB6--DYNC1I2	2	0	TUBB6	3238	chr18:12311052:+	DYNC1I2	23446	chr2:172582128:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	TUBB6->chr18:12307668-12344319:+,tubulin_beta_6_class_V,DYNC1I2->chr2:172543919-172604930:+,dynein_cytoplasmic_1_intermediate_chain_2	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	ZNF790--SMG9	2	0	ZNF790	1786	chr19:37340904:-	SMG9	14390	chr19:44254899:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	ZNF790->chr19:37308330-37341689:-,zinc_finger_protein_790,SMG9->SMG9_nonsense_mediated_mRNA_decay_factor,chr19:44235301-44259142:-	HCC2935_LUNG	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000150
HCC2935_LUNG	RORA--ANXA2	1	3	RORA	1267	chr15:61521252:-	ANXA2	53106	chr15:60678285:-	ONLY_REF_SPLICE	YES	24	431	0.14	0.01	0.011	0.0329	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	HCC2935_LUNG	0.01	0.14	0.0439	FALSE	0	1	0	1	0	FALSE	ACH-000150
HCC2935_LUNG	RP11-59N23.1--CMAS	1	3	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	5	195	0.44	0.02	0.011	0.0329	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	HCC2935_LUNG	0.02	0.44	0.0439	TRUE	21	102	17	28	0	FALSE	ACH-000150
HCC2935_LUNG	C7orf41--ZNRF2	1	1	C7orf41	4424	chr7:30185915:+	ZNRF2	18602	chr7:30395344:+	ONLY_REF_SPLICE	YES	50	39	0.04	0.05	0.011	0.011	C7orf41->chr7:30174426-30202378:+,ZNRF2->chr7:30323923-30452118:+,zinc_and_ring_finger_2,_E3_ubiquitin_protein_ligase	HCC2935_LUNG	0.04	0.05	0.022	TRUE	0	1	0	1	0	FALSE	ACH-000150
HCC2935_LUNG	CBLB--ALCAM	1	1	CBLB	5397	chr3:105495240:-	ALCAM	47246	chr3:105258819:+	ONLY_REF_SPLICE	YES	158	1408	0.01	0	0.011	0.011	GTEx_v2:{count=1;pct=0.01%;dist=Bladder=1},LOCAL_INVERSION:-:+:[78561],CBLB->Cbl_proto-oncogene_B,Oncogene{Bushman},chr3:105374305-105588396:-,ALCAM->activated_leukocyte_cell_adhesion_molecule,chr3:105085753-105295744:+	HCC2935_LUNG	0	0.01	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000150
HCC2935_LUNG	CBLB--ALCAM	1	1	CBLB	27381	chr3:105389077:-	ALCAM	55777	chr3:105290696:+	ONLY_REF_SPLICE	NO	129	1987	0.02	0	0.011	0.011	GTEx_v2:{count=1;pct=0.01%;dist=Bladder=1},LOCAL_INVERSION:-:+:[78561],CBLB->Cbl_proto-oncogene_B,Oncogene{Bushman},chr3:105374305-105588396:-,ALCAM->activated_leukocyte_cell_adhesion_molecule,chr3:105085753-105295744:+	HCC2935_LUNG	0	0.02	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000150
HCC2935_LUNG	HOMER3--CD33	1	1	HOMER3	3909	chr19:19049162:-	CD33	20413	chr19:51746298:+	ONLY_REF_SPLICE	YES	166	0	0.01	1	0.011	0.011	HOMER3->chr19:19040010-19052070:-,homer_scaffolding_protein_3,CD33->CD33_molecule,chr19:51728320-51747115:+	HCC2935_LUNG	0.01	1	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000150
HCC2935_LUNG	MREG--XRCC5	1	1	MREG	4859	chr2:216861029:-	XRCC5	25380	chr2:217001811:+	ONLY_REF_SPLICE	YES	38	674	0.05	0	0.011	0.011	LOCAL_INVERSION:-:+:[73368],MREG->chr2:216809213-216898819:-,melanoregulin,XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+	HCC2935_LUNG	0	0.05	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000150
HCC2935_LUNG	MREG--XRCC5	1	1	MREG	4859	chr2:216861029:-	XRCC5	28606	chr2:217012806:+	ONLY_REF_SPLICE	YES	38	442	0.05	0	0.011	0.011	LOCAL_INVERSION:-:+:[73368],MREG->chr2:216809213-216898819:-,melanoregulin,XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+	HCC2935_LUNG	0	0.05	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000150
HCC2935_LUNG	NR2F1-AS1--FAM172A	1	1	NR2F1-AS1	8930	chr5:92889467:-	FAM172A	38318	chr5:92956835:-	ONLY_REF_SPLICE	NO	35	14	0.05	0.12	0.011	0.011	LOCAL_REARRANGEMENT:-:[32421],NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	HCC2935_LUNG	0.05	0.12	0.022	TRUE	0	1	0	1	1	FALSE	ACH-000150
HCC2935_LUNG	NR2F1-AS1--FAM172A	1	1	NR2F1-AS1	14029	chr5:92831763:-	FAM172A	38318	chr5:92956835:-	ONLY_REF_SPLICE	YES	30	14	0.06	0.12	0.011	0.011	LOCAL_REARRANGEMENT:-:[32421],NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	HCC2935_LUNG	0.06	0.12	0.022	TRUE	0	0	0	1	0	FALSE	ACH-000150
HCC2935_LUNG	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0.011	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC2935_LUNG	1	1	0.022	FALSE	93	270	15	244	0	FALSE	ACH-000150
HCC461_LUNG	PRKCA--RP11-38L15.8	124	69	PRKCA	4995	chr17:64492401:+	RP11-38L15.8	36837	chr10:46914251:-	ONLY_REF_SPLICE	YES	66	22	0.75	0.9	1.3251	0.7373	PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha,RP11-38L15.8->chr10:46914145-46917230:-	HCC461_LUNG	0.75	0.9	2.0624	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	HIF1A--PKP2	97	129	HIF1A	1327	chr14:62162557:+	PKP2	28791	chr12:33003907:-	ONLY_REF_SPLICE	YES	1402	135	0.14	0.63	1.0366	1.3785	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PKP2->chr12:32943679-33049774:-,plakophilin_2	HCC461_LUNG	0.14	0.63	2.4151	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	STX5--WDR74	73	11	STX5	1135	chr11:62599426:-	WDR74	13566	chr11:62607131:-	ONLY_REF_SPLICE	YES	24	63	0.78	0.57	0.7801	0.1175	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	HCC461_LUNG	0.57	0.78	0.8976	TRUE	0	4	0	2	4	TRUE	ACH-000339
HCC461_LUNG	MT-TA--MT-TC	53	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5664	0.0214	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC461_LUNG	1	1	0.5878	FALSE	462	80	0	856	0	FALSE	ACH-000339
HCC461_LUNG	TIMM23B--LINC00843	44	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4702	0.2351	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC461_LUNG	1	1	0.7053	TRUE	508	994	45	981	0	FALSE	ACH-000339
HCC461_LUNG	RPS3--EPSTI1	28	13	RPS3	6383	chr11:75115912:+	EPSTI1	23903	chr13:43474519:-	ONLY_REF_SPLICE	YES	62	17	0.4	0.71	0.2992	0.1389	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,EPSTI1->chr13:43460524-43566407:-,epithelial_stromal_interaction_1_(breast)	HCC461_LUNG	0.4	0.71	0.4381	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	ZNF654--HMGB2	31	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3313	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HCC461_LUNG	1	1	0.3313	TRUE	0	0	0	518	0	FALSE	ACH-000339
HCC461_LUNG	PRKCA--RP11-38L15.8	11	74	PRKCA	4995	chr17:64492401:+	RP11-38L15.8	36280	chr10:46914808:-	ONLY_REF_SPLICE	YES	66	0	0.56	1	0.1175	0.7908	PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha,RP11-38L15.8->chr10:46914145-46917230:-	HCC461_LUNG	0.56	1	0.9083	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	TIMM23--RP11-464F9.1	24	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	577	6	0.04	0.81	0.2565	0.0214	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC461_LUNG	0.04	0.81	0.2779	TRUE	519	3926	326	965	0	FALSE	ACH-000339
HCC461_LUNG	STX5--WDR74	19	13	STX5	1135	chr11:62599426:-	WDR74	13358	chr11:62607339:-	ONLY_REF_SPLICE	YES	24	12	0.57	0.73	0.203	0.1389	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	HCC461_LUNG	0.57	0.73	0.3419	TRUE	0	4	0	2	4	TRUE	ACH-000339
HCC461_LUNG	PDE6B--PPP2R2D	18	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1924	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	HCC461_LUNG	1	1	0.1924	TRUE	7	65	3	22	0	FALSE	ACH-000339
HCC461_LUNG	C15orf57--CBX3	13	19	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	83	39	0.28	0.45	0.1389	0.203	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC461_LUNG	0.28	0.45	0.3419	TRUE	267	562	48	632	0	FALSE	ACH-000339
HCC461_LUNG	GAPDH--MT-ATP8	15	7	GAPDH	4989	chr12:6647105:+	MT-ATP8	8537	chrM:8481:+	INCL_NON_REF_SPLICE	YES	15626	495	0	0.04	0.1603	0.0748	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC461_LUNG	0	0.04	0.2351	FALSE	0	0	0	2	0	FALSE	ACH-000339
HCC461_LUNG	C15orf57--CBX3	12	18	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	81	39	0.27	0.43	0.1282	0.1924	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC461_LUNG	0.27	0.43	0.3206	TRUE	267	562	48	632	0	FALSE	ACH-000339
HCC461_LUNG	USP32--RP11-344E13.3	14	5	USP32	3790	chr17:58469243:-	RP11-344E13.3	48519	chr17:20795543:+	ONLY_REF_SPLICE	YES	21	0	0.47	1	0.1496	0.0534	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,RP11-344E13.3->chr17:20771746-20905589:+	HCC461_LUNG	0.47	1	0.203	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	PRKCA--RP11-38L15.8	3	34	PRKCA	2421	chr17:64302245:+	RP11-38L15.8	36837	chr10:46914251:-	ONLY_REF_SPLICE	NO	54	22	0.41	0.63	0.0321	0.3633	PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha,RP11-38L15.8->chr10:46914145-46917230:-	HCC461_LUNG	0.41	0.63	0.3954	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	PRKCA--RP11-38L15.8	1	39	PRKCA	2421	chr17:64302245:+	RP11-38L15.8	36280	chr10:46914808:-	ONLY_REF_SPLICE	NO	54	0	0.43	1	0.0107	0.4168	PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha,RP11-38L15.8->chr10:46914145-46917230:-	HCC461_LUNG	0.43	1	0.4275	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	MT-CO3--MT-ATP8	10	0	MT-CO3	1083	chrM:9289:+	MT-ATP8	4826	chrM:8407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1069	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC461_LUNG	1	1	0.1069	FALSE	16	100	1	11	0	FALSE	ACH-000339
HCC461_LUNG	MT-ATP6--MT-CO2	8	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	27	2	0.34	0.88	0.0855	0.0641	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC461_LUNG	0.34	0.88	0.1496	FALSE	59	21	0	114	0	FALSE	ACH-000339
HCC461_LUNG	RP11-96H19.1--RP11-446N19.1	6	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.78	1	0.0641	0.1282	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC461_LUNG	0.78	1	0.1923	FALSE	407	2205	196	549	0	FALSE	ACH-000339
HCC461_LUNG	RP11-123O10.4--GRIP1	8	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0855	0.0321	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC461_LUNG	1	1	0.1176	FALSE	416	2512	207	587	0	FALSE	ACH-000339
HCC461_LUNG	RP11-494M8.4--OVCH2	6	11	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	7	0	0.71	1	0.0641	0.1175	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	HCC461_LUNG	0.71	1	0.1816	FALSE	32	0	0	22	0	FALSE	ACH-000339
HCC461_LUNG	RP11-96H19.1--RP11-446N19.1	6	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	0	0.77	1	0.0641	0.1175	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC461_LUNG	0.77	1	0.1816	FALSE	515	4851	409	746	0	FALSE	ACH-000339
HCC461_LUNG	PRR16--CTD-2334D19.1	7	6	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	46	1	0.22	0.93	0.0748	0.0641	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HCC461_LUNG	0.22	0.93	0.1389	FALSE	56	216	12	147	0	FALSE	ACH-000339
HCC461_LUNG	XXbac-BPG252P9.9--TUBBP2	8	0	XXbac-BPG252P9.9	1179	chr6:30691476:-	TUBBP2	4914	chr13:41959179:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0855	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HCC461_LUNG	1	1	0.0855	TRUE	0	1	0	48	1	FALSE	ACH-000339
HCC461_LUNG	RASSF8--SSPN	7	3	RASSF8	9484	chr12:26208379:+	SSPN	28668	chr12:26377226:+	ONLY_REF_SPLICE	YES	69	32	0.13	0.24	0.0748	0.0321	NEIGHBORS[42099],RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	HCC461_LUNG	0.13	0.24	0.1069	FALSE	0	0	1	3	0	FALSE	ACH-000339
HCC461_LUNG	NPM1P24--SET	7	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0748	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC461_LUNG	1	1	0.0748	TRUE	0	0	0	434	0	FALSE	ACH-000339
HCC461_LUNG	STX5--WDR74	4	11	STX5	1135	chr11:62599426:-	WDR74	13519	chr11:62607178:-	ONLY_REF_SPLICE	YES	24	26	0.38	0.37	0.0427	0.1175	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	HCC461_LUNG	0.37	0.38	0.1602	TRUE	0	4	0	2	4	TRUE	ACH-000339
HCC461_LUNG	MT-TA--MT-TC	5	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0.0641	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC461_LUNG	1	1	0.1175	FALSE	462	80	0	856	0	FALSE	ACH-000339
HCC461_LUNG	RPS3--EPSTI1	3	14	RPS3	7208	chr11:75116737:+	EPSTI1	23903	chr13:43474519:-	INCL_NON_REF_SPLICE	YES	44	17	0.28	0.5	0.0321	0.1496	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,EPSTI1->chr13:43460524-43566407:-,epithelial_stromal_interaction_1_(breast)	HCC461_LUNG	0.28	0.5	0.1817	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	NRIP1--AF127936.7	6	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.44	1	0.0641	0.0107	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC461_LUNG	0.44	1	0.0748	FALSE	125	705	46	456	0	FALSE	ACH-000339
HCC461_LUNG	STX5--WDR74	3	13	STX5	2070	chr11:62598491:-	WDR74	13566	chr11:62607131:-	ONLY_REF_SPLICE	YES	81	63	0.16	0.2	0.0321	0.1389	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	HCC461_LUNG	0.16	0.2	0.171	TRUE	0	4	0	2	4	TRUE	ACH-000339
HCC461_LUNG	XXbac-BPG252P9.9--TUBBP2	6	1	XXbac-BPG252P9.9	1174	chr6:30691481:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	5667	0	0	1	0.0641	0.0107	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HCC461_LUNG	0	1	0.0748	FALSE	0	1	0	48	1	FALSE	ACH-000339
HCC461_LUNG	XXbac-BPG252P9.9--TUBBP2	6	1	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	2324	0	0	1	0.0641	0.0107	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HCC461_LUNG	0	1	0.0748	FALSE	0	1	0	48	1	FALSE	ACH-000339
HCC461_LUNG	KDM3B--CTNNA1	6	0	KDM3B	1392	chr5:137688676:+	CTNNA1	56407	chr5:138221901:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0641	0	KDM3B->chr5:137688285-137772717:+,lysine_demethylase_3B,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	HCC461_LUNG	1	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	MT-ATP6--MT-CO2	5	4	MT-ATP6	1213	chrM:8739:+	MT-CO2	4898	chrM:7802:+	INCL_NON_REF_SPLICE	YES	53	2	0.15	0.82	0.0534	0.0427	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC461_LUNG	0.15	0.82	0.0961	FALSE	59	21	0	114	0	FALSE	ACH-000339
HCC461_LUNG	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0641	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC461_LUNG	1	1	0.0641	FALSE	292	1546	117	613	0	FALSE	ACH-000339
HCC461_LUNG	XXbac-BPG252P9.9--TUBBP2	6	0	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HCC461_LUNG	1	1	0.0641	TRUE	0	1	0	48	1	FALSE	ACH-000339
HCC461_LUNG	GAPDH--MT-ATP8	5	3	GAPDH	4370	chr12:6646486:+	MT-ATP8	8534	chrM:8478:+	INCL_NON_REF_SPLICE	YES	21490	347	0	0.02	0.0534	0.0321	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC461_LUNG	0	0.02	0.0855	FALSE	0	0	0	2	0	FALSE	ACH-000339
HCC461_LUNG	MT-ATP6--MT-CO2	5	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	27	2	0.23	0.8	0.0534	0.0321	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC461_LUNG	0.23	0.8	0.0855	FALSE	59	21	0	114	0	FALSE	ACH-000339
HCC461_LUNG	MT-ATP6--MT-CO2	5	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	16	2	0.3	0.78	0.0534	0.0214	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC461_LUNG	0.3	0.78	0.0748	FALSE	59	21	0	114	0	FALSE	ACH-000339
HCC461_LUNG	MT-ATP6--MT-CO2	4	6	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	27	2	0.27	0.83	0.0427	0.0641	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC461_LUNG	0.27	0.83	0.1068	FALSE	59	21	0	114	0	FALSE	ACH-000339
HCC461_LUNG	MT-ATP6--MT-CO2	4	4	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	26	2	0.24	0.8	0.0427	0.0427	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC461_LUNG	0.24	0.8	0.0854	FALSE	59	21	0	114	0	FALSE	ACH-000339
HCC461_LUNG	MT-ND5--MT-ND6	4	4	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	3	3220	0.73	0	0.0427	0.0427	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HCC461_LUNG	0	0.73	0.0854	FALSE	26	124	4	93	0	FALSE	ACH-000339
HCC461_LUNG	STX5--WDR74	1	16	STX5	2070	chr11:62598491:-	WDR74	13358	chr11:62607339:-	ONLY_REF_SPLICE	YES	81	12	0.17	0.59	0.0107	0.171	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	HCC461_LUNG	0.17	0.59	0.1817	TRUE	0	4	0	2	4	TRUE	ACH-000339
HCC461_LUNG	GAPDH--MT-ATP8	4	3	GAPDH	4266	chr12:6646382:+	MT-ATP8	8522	chrM:8466:+	INCL_NON_REF_SPLICE	YES	22079	7	0	0.5	0.0427	0.0321	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC461_LUNG	0	0.5	0.0748	FALSE	0	0	0	2	0	FALSE	ACH-000339
HCC461_LUNG	GAPDH--MT-ATP8	4	3	GAPDH	4266	chr12:6646382:+	MT-ATP8	8537	chrM:8481:+	INCL_NON_REF_SPLICE	YES	22079	495	0	0.01	0.0427	0.0321	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC461_LUNG	0	0.01	0.0748	FALSE	0	0	0	2	0	FALSE	ACH-000339
HCC461_LUNG	HIF1A--PKP2	1	15	HIF1A	1327	chr14:62162557:+	PKP2	31131	chr12:32994139:-	ONLY_REF_SPLICE	YES	1402	222	0.01	0.07	0.0107	0.1603	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PKP2->chr12:32943679-33049774:-,plakophilin_2	HCC461_LUNG	0.01	0.07	0.171	TRUE	0	0	0	1	0	FALSE	ACH-000339
HCC461_LUNG	NRIP1--AF127936.7	3	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.42	1	0.0321	0.0748	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC461_LUNG	0.42	1	0.1069	FALSE	164	806	69	479	0	FALSE	ACH-000339
HCC461_LUNG	MT-ATP6--MT-CO2	4	2	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	19	2	0.24	0.75	0.0427	0.0214	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC461_LUNG	0.24	0.75	0.0641	FALSE	59	21	0	114	0	FALSE	ACH-000339
HCC461_LUNG	MT-CO3--MT-ATP8	4	2	MT-CO3	1550	chrM:9756:+	MT-ATP8	4891	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8015	1	0	0.86	0.0427	0.0214	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC461_LUNG	0	0.86	0.0641	FALSE	16	100	1	11	0	FALSE	ACH-000339
HCC461_LUNG	XRRA1--UVRAG	4	2	XRRA1	13732	chr11:74617284:-	UVRAG	33501	chr11:75562928:+	ONLY_REF_SPLICE	YES	15	5	0.29	0.55	0.0427	0.0214	XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-,UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+	HCC461_LUNG	0.29	0.55	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	MT-TA--MT-TC	3	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0321	0.0534	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC461_LUNG	1	1	0.0855	FALSE	462	80	0	856	0	FALSE	ACH-000339
HCC461_LUNG	XXbac-BPG252P9.9--TUBBP2	4	1	XXbac-BPG252P9.9	1068	chr6:30691587:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	3923	0	0	1	0.0427	0.0107	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HCC461_LUNG	0	1	0.0534	FALSE	0	1	0	48	1	FALSE	ACH-000339
HCC461_LUNG	RP11-96H19.1--RP11-446N19.1	1	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	5	0	0.72	1	0.0107	0.1282	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC461_LUNG	0.72	1	0.1389	FALSE	275	511	55	178	0	FALSE	ACH-000339
HCC461_LUNG	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1003	chr6:30691652:-	TUBBP2	4896	chr13:41959197:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HCC461_LUNG	1	1	0.0427	TRUE	0	1	0	48	1	FALSE	ACH-000339
HCC461_LUNG	MT-ATP6--MT-CO2	3	3	MT-ATP6	1516	chrM:9042:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	4	3	0.6	0.67	0.0321	0.0321	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC461_LUNG	0.6	0.67	0.0642	FALSE	59	21	0	114	0	FALSE	ACH-000339
HCC461_LUNG	MT-ND5--MT-ND6	3	3	MT-ND5	2761	chrM:14097:+	MT-ND6	6169	chrM:14317:-	INCL_NON_REF_SPLICE	YES	2	3305	0.75	0	0.0321	0.0321	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HCC461_LUNG	0	0.75	0.0642	FALSE	26	124	4	93	0	FALSE	ACH-000339
HCC461_LUNG	CCDC122--ENOX1	3	1	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	64	6	0.06	0.4	0.0321	0.0107	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	HCC461_LUNG	0.06	0.4	0.0428	FALSE	39	52	2	34	0	FALSE	ACH-000339
HCC461_LUNG	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	40	1	0.09	0.0321	0.0107	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC461_LUNG	0.09	1	0.0428	FALSE	16	356	14	466	0	FALSE	ACH-000339
HCC461_LUNG	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0321	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC461_LUNG	1	1	0.0321	TRUE	0	0	0	434	0	FALSE	ACH-000339
HCC461_LUNG	NRIP1--AF127936.7	3	0	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0321	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC461_LUNG	1	1	0.0321	FALSE	7	44	2	41	0	FALSE	ACH-000339
HCC461_LUNG	RP11-494M8.4--OVCH2	2	4	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.0214	0.0427	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	HCC461_LUNG	0.46	1	0.0641	FALSE	60	13	8	23	0	FALSE	ACH-000339
HCC461_LUNG	USP32--RP11-344E13.3	1	6	USP32	3790	chr17:58469243:-	RP11-344E13.3	47261	chr17:20790905:+	ONLY_REF_SPLICE	YES	21	0	0.25	1	0.0107	0.0641	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,RP11-344E13.3->chr17:20771746-20905589:+	HCC461_LUNG	0.25	1	0.0748	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	AGK--NDUFB2	2	0	AGK	2361	chr7:141255367:+	NDUFB2	34277	chr7:140402666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx_FI:{Esophagus=[count:1=pct:0.2],Thyroid=[count:1=pct:0.6]},{Klijn_CCL:Lung=1,Ovary=1},AGK->acylglycerol_kinase,chr7:141250989-141355044:+,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	HCC461_LUNG	1	1	0.0214	TRUE	1	5	0	3	1	TRUE	ACH-000339
HCC461_LUNG	CHST11--EFTUD2	2	0	CHST11	4052	chr12:104982721:+	EFTUD2	21399	chr17:42962702:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2	HCC461_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	DDX39A--SEPHS1	2	0	DDX39A	1111	chr19:14530082:-	SEPHS1	14560	chr10:13387028:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	DDX39A->DEAD-box_helicase_39A,chr19:14519631-14530192:-,SEPHS1->chr10:13359424-13390297:-,selenophosphate_synthetase_1	HCC461_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	KBTBD2--DPY19L1P1	2	0	KBTBD2	5562	chr7:32919047:-	DPY19L1P1	25907	chr7:32678977:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	KBTBD2->chr7:32907784-32933743:-,kelch_repeat_and_BTB_domain_containing_2,DPY19L1P1->DPY19L1_pseudogene_1,chr7:32620561-32801399:-	HCC461_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	MCF2L--CARS2	2	0	MCF2L	35052	chr13:113720484:+	CARS2	88227	chr13:111294868:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,CARS2->chr13:111293759-111365950:-,cysteinyl-tRNA_synthetase_2,_mitochondrial_(putative)	HCC461_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	RCC1--KAT6B	2	0	RCC1	2175	chr1:28834672:+	KAT6B	21567	chr10:76598441:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B	HCC461_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HCC461_LUNG	1	1	0.0214	FALSE	46	201	11	112	0	FALSE	ACH-000339
HCC461_LUNG	RP11-494M8.4--OVCH2	1	4	RP11-494M8.4	4247	chr11:7902636:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.0107	0.0427	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	HCC461_LUNG	0.36	1	0.0534	FALSE	6	0	0	3	0	FALSE	ACH-000339
HCC461_LUNG	RPL30--LAPTM4B	2	0	RPL30	2527	chr8:99057171:-	LAPTM4B	17876	chr8:98863625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	HCC461_LUNG	1	1	0.0214	TRUE	0	1	0	5	0	TRUE	ACH-000339
HCC461_LUNG	SREK1--FUS	2	0	SREK1	4141	chr5:65449424:+	FUS	37137	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	HGNC_GENEFAM,SREK1->chr5:65435799-65479443:+,splicing_regulatory_glutamic_acid/lysine-rich_protein_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	HCC461_LUNG	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000339
HCC461_LUNG	COL8A1--CMSS1	1	3	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	NO	115	408	0.03	0.01	0.0107	0.0321	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HCC461_LUNG	0.01	0.03	0.0428	FALSE	38	10	2	29	0	FALSE	ACH-000339
HCC461_LUNG	RASSF8--SSPN	1	3	RASSF8	9484	chr12:26208379:+	SSPN	24767	chr12:26332929:+	ONLY_REF_SPLICE	NO	69	0	0.05	1	0.0107	0.0321	NEIGHBORS[42099],RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	HCC461_LUNG	0.05	1	0.0428	FALSE	0	0	0	1	0	FALSE	ACH-000339
HCC461_LUNG	HIF1A-AS2--HIF1A	1	2	HIF1A-AS2	1213	chr14:62217603:-	HIF1A	21735	chr14:62211423:+	ONLY_REF_SPLICE	YES	15	2157	0.17	0	0.0107	0.0214	NEIGHBORS_OVERLAP:-:+:[32700],HIF1A-AS2->HIF1A_antisense_RNA_2,chr14:62182276-62217815:-,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	HCC461_LUNG	0	0.17	0.0321	FALSE	0	3	0	1	0	FALSE	ACH-000339
HCC461_LUNG	HIF1A-AS2--YLPM1	1	1	HIF1A-AS2	1213	chr14:62217603:-	YLPM1	29294	chr14:75295916:+	ONLY_REF_SPLICE	YES	15	247	0.12	0.01	0.0107	0.0107	HIF1A-AS2->HIF1A_antisense_RNA_2,chr14:62182276-62217815:-,YLPM1->YLP_motif_containing_1,chr14:75230069-75322244:+	HCC461_LUNG	0.01	0.12	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000339
HCC461_LUNG	KANSL1--LRRC37A3	1	1	KANSL1	8599	chr17:44230270:-	LRRC37A3	40469	chr17:62888718:-	ONLY_REF_SPLICE	YES	41	31	0.05	0.06	0.0107	0.0107	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:8=pct:1.2],Nerve=[count:4=pct:2.4],Skin=[count:2=pct:0.6],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Prostate=[count:1=pct:1.6]},KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	HCC461_LUNG	0.05	0.06	0.0214	TRUE	15	5	1	2	0	FALSE	ACH-000339
HCC461_LUNG	RASSF8--SSPN	1	1	RASSF8	3380	chr12:26148063:+	SSPN	28668	chr12:26377226:+	ONLY_REF_SPLICE	YES	9	32	0.18	0.06	0.0107	0.0107	NEIGHBORS[42099],RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	HCC461_LUNG	0.06	0.18	0.0214	FALSE	0	0	0	3	0	FALSE	ACH-000339
HCC461_LUNG	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	52	141	0.04	0.01	0.0107	0.0107	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HCC461_LUNG	0.01	0.04	0.0214	FALSE	0	59	0	125	0	FALSE	ACH-000339
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--ATP8A2	148	68	RUNX1	21108	chr21:36421139:-	ATP8A2	75364	chr13:26343184:+	ONLY_REF_SPLICE	YES	47	0	0.82	1	1.5161	0.6966	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,ATP8A2->ATPase_phospholipid_transporting_8A2,chr13:25946209-26599989:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	2.2127	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	153	47	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5674	0.4815	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.0489	TRUE	508	994	45	981	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	117	42	KMT2A	18437	chr11:118355690:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	18	5	0.9	0.97	1.1986	0.4303	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.97	1.6289	TRUE	0	0	0	4	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	87	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	215	22	0.29	0.8	0.8912	0.0102	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.8	0.9014	TRUE	519	3926	326	965	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	38	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3893	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3893	TRUE	0	0	0	518	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	30	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3073	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3073	TRUE	0	0	0	434	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT3	23	26	KMT2A	17776	chr11:118355029:+	MLLT3	63794	chr9:20365742:-	ONLY_REF_SPLICE	YES	21	5	0.7	0.91	0.2356	0.2663	Cosmic{samples=399,mutations=75,papers=33},Mitelman{Skin=2,ALL=2,AML=14},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.91	0.5019	TRUE	0	0	0	4	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	27	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2766	0.0307	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3073	FALSE	462	80	0	856	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	18	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	82	20	0.28	0.62	0.1844	0.1434	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.62	0.3278	TRUE	267	562	48	632	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1639	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1639	FALSE	499	1288	110	792	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--HMGB1	15	0	RCC1	2175	chr1:28834672:+	HMGB1	23625	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1537	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1537	TRUE	0	6	0	3	4	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	11	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	78	21	0.21	0.5	0.1127	0.1024	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.5	0.2151	TRUE	267	562	48	632	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	10	3	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	152	0	0.08	1	0.1024	0.0307	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.1331	TRUE	61	154	6	19	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POMP--GSX1	3	25	POMP	3975	chr13:29238706:+	GSX1	11986	chr13:28367703:+	ONLY_REF_SPLICE	YES	1036	3	0.03	0.9	0.0307	0.2561	POMP->chr13:29233241-29253062:+,proteasome_maturation_protein,GSX1->GS_homeobox_1,chr13:28366780-28368905:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.9	0.2868	TRUE	0	0	0	1	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0717	0.0205	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0922	FALSE	499	1288	110	792	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	6	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0615	0.041	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1025	TRUE	477	1352	189	275	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0615	0.0307	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.0922	FALSE	499	1288	110	792	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POMP--FLT3	6	3	POMP	3975	chr13:29238706:+	FLT3	21181	chr13:28609810:-	ONLY_REF_SPLICE	YES	1036	1803	0.01	0	0.0615	0.0307	POMP->chr13:29233241-29253062:+,proteasome_maturation_protein,FLT3->OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr13:28577411-28674729:-,fms_related_tyrosine_kinase_3	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0922	FALSE	0	0	0	1	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	12	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	78	21	0.16	0.42	0.0307	0.1229	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.42	0.1536	TRUE	267	562	48	632	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POMP--PAN3	4	5	POMP	3975	chr13:29238706:+	PAN3	17067	chr13:28794368:+	ONLY_REF_SPLICE	YES	1036	1161	0.01	0.01	0.041	0.0512	POMP->chr13:29233241-29253062:+,proteasome_maturation_protein,PAN3->PAN3_poly(A)_specific_ribonuclease_subunit,chr13:28712643-28869475:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0922	FALSE	0	0	0	1	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0512	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0512	FALSE	499	1288	110	792	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POMP--PAN3	4	4	POMP	3975	chr13:29238706:+	PAN3	19696	chr13:28830429:+	ONLY_REF_SPLICE	YES	1036	809	0.01	0.01	0.041	0.041	POMP->chr13:29233241-29253062:+,proteasome_maturation_protein,PAN3->PAN3_poly(A)_specific_ribonuclease_subunit,chr13:28712643-28869475:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.082	FALSE	0	0	0	1	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	4	3	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	152	0	0.04	1	0.041	0.0307	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0717	TRUE	30	67	4	15	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0.0205	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0615	FALSE	462	80	0	856	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	4	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0307	0.041	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.0717	FALSE	499	1288	110	792	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.041	FALSE	462	80	0	856	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ALOX5AP--ATP8A2	3	2	ALOX5AP	5868	chr13:31330162:+	ATP8A2	34214	chr13:26153946:+	ONLY_REF_SPLICE	YES	2142	0	0	1	0.0307	0.0205	ALOX5AP->arachidonate_5-lipoxygenase_activating_protein,chr13:31309645-31338556:+,ATP8A2->ATPase_phospholipid_transporting_8A2,chr13:25946209-26599989:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0512	FALSE	0	0	0	1	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0307	0.0205	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.0512	FALSE	125	705	46	456	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0307	0.0102	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0409	FALSE	515	4851	409	746	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0307	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0307	FALSE	292	1546	117	613	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT3--KMT2A	2	3	MLLT3	6822	chr9:20413719:-	KMT2A	46023	chr11:118360507:+	ONLY_REF_SPLICE	YES	5	20	0.5	0.2	0.0205	0.0307	MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.5	0.0512	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	2	3	RP11-353N4.6	7562	chr1:149591237:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	168	0	0.03	1	0.0205	0.0307	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0512	TRUE	2	9	0	4	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POMP--PAN3	1	6	POMP	3975	chr13:29238706:+	PAN3	15905	chr13:28771322:+	ONLY_REF_SPLICE	YES	1036	1035	0.01	0.01	0.0102	0.0615	POMP->chr13:29233241-29253062:+,proteasome_maturation_protein,PAN3->PAN3_poly(A)_specific_ribonuclease_subunit,chr13:28712643-28869475:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0717	FALSE	0	0	0	1	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTR3--TPRKB	2	0	ACTR3	4000	chr2:114674585:+	TPRKB	28149	chr2:73959412:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	ACTR3->ARP3_actin-related_protein_3_homolog_(yeast),chr2:114647537-114720173:+,TPRKB->TP53RK_binding_protein,chr2:73956231-73964527:-	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C14orf142--WDR91	2	0	C14orf142	1265	chr14:93673175:-	WDR91	12098	chr7:134889185:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	C14orf142->chr14:93669239-93673439:-,chromosome_14_open_reading_frame_142,WDR91->WD_repeat_domain_91,chr7:134868590-134896316:-	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CARD8--CLASP2	2	0	CARD8	10756	chr19:48734034:-	CLASP2	63720	chr3:33633988:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	CARD8->Oncogene{Bushman},caspase_recruitment_domain_family_member_8,chr19:48684027-48759203:-,CLASP2->chr3:33537737-33759848:-,cytoplasmic_linker_associated_protein_2	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBX5--TSPAN4	2	0	CBX5	1095	chr12:54673792:-	TSPAN4	24538	chr11:847201:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	CBX5->chr12:54624724-54673886:-,chromobox_5,TSPAN4->chr11:842808-867116:+,tetraspanin_4	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--PVT1	2	0	CCDC26	1312	chr8:130692174:-	PVT1	30258	chr8:129082406:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTF2H2C--HP1BP3	2	0	GTF2H2C	3602	chr5:68861015:+	HP1BP3	29499	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTF2H2C->GTF2H2_family_member_C,chr5:68856035-68890550:+,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUPL2--KLHL7	2	0	NUPL2	3987	chr7:23226765:+	KLHL7	23347	chr7:23191686:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	LOCAL_REARRANGEMENT:+:[3913],NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,KLHL7->chr7:23145353-23217533:+,kelch_like_family_member_7	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--HMGB1	2	0	RCC1	1142	chr1:28832596:+	HMGB1	23625	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-387D10.2--CWC22	2	0	RP11-387D10.2	3420	chr15:91256398:-	CWC22	26710	chr2:180810442:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	RP11-387D10.2->chr15:91163239-91260372:-,CWC22->CWC22_homolog,_spliceosome-associated_protein,chr2:180809603-180871840:-	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	62	24	1	171	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0102	0.0307	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.0409	FALSE	164	806	69	479	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BACH1-IT1--BACH1	1	1	BACH1-IT1	2030	chr21:30724984:+	BACH1	27605	chr21:30969890:+	ONLY_REF_SPLICE	YES	2	4	0.5	0.33	0.0102	0.0102	NEIGHBORS_OVERLAP:+:+:[10260],BACH1-IT1->BACH1_intronic_transcript_1,chr21:30723955-30734215:+,BACH1->BTB_domain_and_CNC_homolog_1,chr21:30566392-31003071:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.5	0.0204	FALSE	22	22	0	3	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX23--RP11-302B13.5	1	1	DDX23	5174	chr12:49237723:-	RP11-302B13.5	22747	chr12:49297691:-	ONLY_REF_SPLICE	NO	172	0	0.01	1	0.0102	0.0102	LOCAL_REARRANGEMENT:-:[50661],DDX23->DEAD-box_helicase_23,chr12:49223547-49246625:-,RP11-302B13.5->chr12:49297286-49351148:-	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	METTL12--SLC3A2	1	1	METTL12	1638	chr11:62433418:+	SLC3A2	14032	chr11:62650380:+	ONLY_REF_SPLICE	YES	2	667	0.5	0	0.0102	0.0102	METTL12->chr11:62432781-62435968:+,methyltransferase_like_12,SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.5	0.0204	FALSE	0	0	0	2	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	1	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0102	0.0102	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	FALSE	46	201	11	112	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0102	0.0102	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0204	FALSE	275	511	55	178	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--SET	1	1	SF1	3289	chr11:64543970:-	SET	20886	chr9:131453449:+	ONLY_REF_SPLICE	YES	448	602	0	0	0.0102	0.0102	SF1->chr11:64532078-64546258:-,splicing_factor_1,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000006
MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WRN--UNC5D	1	1	WRN	18715	chr8:30958471:+	UNC5D	62396	chr8:35647877:+	ONLY_REF_SPLICE	YES	25	0	0.07	1	0.0102	0.0102	WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+,UNC5D->chr8:35092975-35654068:+,unc-5_netrin_receptor_D	MONOMAC6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000006
BT20_BREAST	VOPP1--TYW1	231	105	VOPP1	17158	chr7:55559975:-	TYW1	36207	chr7:66532272:+	ONLY_REF_SPLICE	YES	552	117	0.38	0.74	1.9225	0.8739	VOPP1->chr7:55503749-55640681:-,vesicular,_overexpressed_in_cancer,_prosurvival_protein_1,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	BT20_BREAST	0.38	0.74	2.7964	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	PLEKHB2--ARHGEF4	193	57	PLEKHB2	5988	chr2:131878551:+	ARHGEF4	31017	chr2:131785518:+	ONLY_REF_SPLICE	YES	122	1	0.67	1	1.6063	0.4744	GTEx_v2:{count=1;pct=0.01%;dist=Pituitary=1},HGNC_GENEFAM,{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[57584],PLEKHB2->chr2:131862420-132111282:+,pleckstrin_homology_domain_containing_B2,ARHGEF4->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_4,chr2:131594489-131804836:+	BT20_BREAST	0.67	1	2.0807	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	CIZ1--LCN2	117	43	CIZ1	10518	chr9:130939845:-	LCN2	20804	chr9:130912517:+	ONLY_REF_SPLICE	YES	474	1009	0.25	0.14	0.9737	0.3579	{Klijn_CCL:Breast=1},LOCAL_INVERSION:-:+:[12609],CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-,LCN2->chr9:130911350-130915734:+,lipocalin_2	BT20_BREAST	0.14	0.25	1.3316	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	HSPBP1--ZSWIM6	126	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0486	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	BT20_BREAST	1	1	1.0486	TRUE	47	32	1	28	0	FALSE	ACH-000536
BT20_BREAST	PLXDC1--TAF13	110	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9155	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	BT20_BREAST	1	1	0.9155	TRUE	7	10	0	216	0	FALSE	ACH-000536
BT20_BREAST	TIMM23B--LINC00843	103	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8572	0.233	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BT20_BREAST	0.99	1	1.0902	TRUE	508	994	45	981	0	FALSE	ACH-000536
BT20_BREAST	PVT1--RP11-382A18.2	98	46	PVT1	1200	chr8:128806978:+	RP11-382A18.2	28456	chr8:128351523:+	INCL_NON_REF_SPLICE	YES	69	0	0.68	1	0.8156	0.3828	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-382A18.2->chr8:128351519-128404876:+	BT20_BREAST	0.68	1	1.1984	TRUE	0	5	0	1	5	TRUE	ACH-000536
BT20_BREAST	GOLGB1--ILDR1	82	52	GOLGB1	5721	chr3:121445760:-	ILDR1	39420	chr3:121713160:-	ONLY_REF_SPLICE	YES	49	0	0.73	1	0.6825	0.4328	GOLGB1->chr3:121382046-121468602:-,golgin_B1,ILDR1->chr3:121706170-121741051:-,immunoglobulin_like_domain_containing_receptor_1	BT20_BREAST	0.73	1	1.1153	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	MT-ND6--MT-ND5	87	0	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7241	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	BT20_BREAST	1	1	0.7241	FALSE	101	855	57	72	0	FALSE	ACH-000536
BT20_BREAST	RASSF3--TBK1	81	3	RASSF3	1231	chr12:65004523:+	TBK1	19891	chr12:64873792:+	ONLY_REF_SPLICE	YES	14	57	0.86	0.6	0.6741	0.025	RASSF3->Ras_association_domain_family_member_3,chr12:65004293-65091347:+,TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+	BT20_BREAST	0.6	0.86	0.6991	TRUE	0	1	0	1	1	TRUE	ACH-000536
BT20_BREAST	ACTB--RNF216	70	7	ACTB	5856	chr7:5568792:-	RNF216	37090	chr7:5663756:-	ONLY_REF_SPLICE	YES	8182	107	0.01	0.42	0.5826	0.0583	LOCAL_REARRANGEMENT:-:[56263],ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,RNF216->Oncogene{Bushman},chr7:5659678-5821370:-,ring_finger_protein_216	BT20_BREAST	0.01	0.42	0.6409	TRUE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	TIMM23--RP11-464F9.1	71	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	230	9	0.24	0.89	0.5909	0.0166	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BT20_BREAST	0.24	0.89	0.6075	TRUE	519	3926	326	965	0	FALSE	ACH-000536
BT20_BREAST	GOLGB1--ILDR1	48	32	GOLGB1	5721	chr3:121445760:-	ILDR1	39763	chr3:121712817:-	ONLY_REF_SPLICE	YES	49	10	0.62	0.89	0.3995	0.2663	GOLGB1->chr3:121382046-121468602:-,golgin_B1,ILDR1->chr3:121706170-121741051:-,immunoglobulin_like_domain_containing_receptor_1	BT20_BREAST	0.62	0.89	0.6658	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	MT-ND6--MT-TE	44	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3662	0.0166	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT20_BREAST	1	1	0.3828	FALSE	499	1288	110	792	0	FALSE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	3	140	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	20	0	0.88	1	0.025	1.1652	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0.88	1	1.1902	FALSE	344	826	44	306	0	FALSE	ACH-000536
BT20_BREAST	CIZ1--LCN2	21	67	CIZ1	10518	chr9:130939845:-	LCN2	20049	chr9:130911762:+	ONLY_REF_SPLICE	YES	474	13	0.16	0.87	0.1748	0.5576	{Klijn_CCL:Breast=1},LOCAL_INVERSION:-:+:[12609],CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-,LCN2->chr9:130911350-130915734:+,lipocalin_2	BT20_BREAST	0.16	0.87	0.7324	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	3	139	MT-ND4	1148	chrM:10907:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	YES	7	1	0.95	0.99	0.025	1.1568	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0.95	0.99	1.1818	FALSE	344	826	44	306	0	FALSE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	3	139	MT-ND4	1220	chrM:10979:+	MT-ND4L	5536	chrM:10627:+	INCL_NON_REF_SPLICE	YES	27	1	0.84	0.99	0.025	1.1568	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0.84	0.99	1.1818	FALSE	344	827	44	306	0	FALSE	ACH-000536
BT20_BREAST	MT-TA--MT-TC	35	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2913	0.0083	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BT20_BREAST	1	1	0.2996	FALSE	462	80	0	856	0	FALSE	ACH-000536
BT20_BREAST	MORC3--DOPEY2	33	8	MORC3	18015	chr21:37742174:+	DOPEY2	66822	chr21:37660312:+	ONLY_REF_SPLICE	YES	43	29	0.49	0.59	0.2746	0.0666	GTEx_v2:{count=2;pct=0.02%;dist=Breast_-_Mammary_Tissue=1,Heart_-_Atrial_Appendage=1},LOCAL_REARRANGEMENT:+:[25915],MORC3->MORC_family_CW-type_zinc_finger_3,chr21:37692487-37758446:+,DOPEY2->Oncogene{Bushman},chr21:37529080-37666572:+,dopey_family_member_2	BT20_BREAST	0.49	0.59	0.3412	TRUE	0	1	0	1	0	TRUE	ACH-000536
BT20_BREAST	NRIP1--AF127936.7	33	7	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.91	1	0.2746	0.0583	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BT20_BREAST	0.91	1	0.3329	FALSE	292	1546	117	613	0	FALSE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	7	102	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	1	0.96	0.99	0.0583	0.8489	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0.96	0.99	0.9072	FALSE	344	821	44	306	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO2	29	7	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	58	2	0.38	0.95	0.2414	0.0583	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BT20_BREAST	0.38	0.95	0.2997	FALSE	59	21	0	114	0	FALSE	ACH-000536
BT20_BREAST	MT-ND6--MT-TE	27	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2247	0.025	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT20_BREAST	1	1	0.2497	FALSE	499	1288	110	792	0	FALSE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	3	92	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	6	1	0.94	0.99	0.025	0.7657	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0.94	0.99	0.7907	FALSE	344	826	44	306	0	FALSE	ACH-000536
BT20_BREAST	LIMA1--USP22	22	12	LIMA1	7343	chr12:50615804:-	USP22	26857	chr17:20931987:-	ONLY_REF_SPLICE	YES	183	178	0.16	0.16	0.1831	0.0999	{Klijn_CCL:Breast=1},LIMA1->LIM_domain_and_actin_binding_1,chr12:50569571-50677329:-,USP22->chr17:20902910-20947073:-,ubiquitin_specific_peptidase_22	BT20_BREAST	0.16	0.16	0.283	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	3	85	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	22	1	0.8	0.99	0.025	0.7074	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0.8	0.99	0.7324	FALSE	344	826	44	306	0	FALSE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	3	85	MT-ND4	1164	chrM:10923:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	8	1	0.92	0.99	0.025	0.7074	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0.92	0.99	0.7324	FALSE	344	826	44	306	0	FALSE	ACH-000536
BT20_BREAST	FHDC1--GOPC	23	3	FHDC1	1058	chr4:153857561:+	GOPC	21006	chr6:117900227:-	ONLY_REF_SPLICE	YES	0	82	1	0.24	0.1914	0.025	FHDC1->FH2_domain_containing_1,chr4:153857504-153900848:+,GOPC->Oncogene{Bushman},chr6:117639374-117923691:-,golgi-associated_PDZ_and_coiled-coil_motif_containing	BT20_BREAST	0.24	1	0.2164	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	TNRC18--RNF216	18	23	TNRC18	2230	chr7:5463072:-	RNF216	47495	chr7:5800769:-	ONLY_REF_SPLICE	YES	9	53	0.82	0.44	0.1498	0.1914	YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,RNF216->Oncogene{Bushman},chr7:5659678-5821370:-,ring_finger_protein_216	BT20_BREAST	0.44	0.82	0.3412	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	CORO7--NMRAL1	21	9	CORO7	7741	chr16:4462357:-	NMRAL1	30789	chr16:4531880:-	ONLY_REF_SPLICE	YES	18	0	0.62	1	0.1748	0.0749	LOCAL_REARRANGEMENT:-:[35975],CORO7->chr16:4404543-4475706:-,coronin_7,NMRAL1->NmrA-like_family_domain_containing_1,chr16:4511681-4545764:-	BT20_BREAST	0.62	1	0.2497	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	PCM1--RP11-806O11.1	18	13	PCM1	39801	chr8:17868177:+	RP11-806O11.1	51717	chr8:17677867:+	ONLY_REF_SPLICE	YES	67	0	0.32	1	0.1498	0.1082	PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1,RP11-806O11.1->chr8:17666450-17678377:+	BT20_BREAST	0.32	1	0.258	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	MT-ND5--MT-ATP8	20	1	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	NO	2956	3	0.01	0.88	0.1665	0.0083	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT20_BREAST	0.01	0.88	0.1748	FALSE	43	37	8	105	0	FALSE	ACH-000536
BT20_BREAST	MT-ND6--MT-TE	16	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1332	0.1248	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT20_BREAST	0.97	1	0.258	FALSE	499	1288	110	792	0	FALSE	ACH-000536
BT20_BREAST	PVT1--RP11-382A18.2	10	38	PVT1	2457	chr8:128808254:+	RP11-382A18.2	28458	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	77	0	0.38	1	0.0832	0.3163	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-382A18.2->chr8:128351519-128404876:+	BT20_BREAST	0.38	1	0.3995	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	RP11-123O10.4--GRIP1	17	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.1415	0.0749	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BT20_BREAST	0.96	1	0.2164	FALSE	416	2512	207	587	0	FALSE	ACH-000536
BT20_BREAST	NPM1P24--SET	18	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1498	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BT20_BREAST	1	1	0.1498	TRUE	0	0	0	434	0	FALSE	ACH-000536
BT20_BREAST	TNRC18--RNF216	11	25	TNRC18	3660	chr7:5460691:-	RNF216	47495	chr7:5800769:-	ONLY_REF_SPLICE	YES	39	53	0.48	0.4	0.0915	0.2081	YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,RNF216->Oncogene{Bushman},chr7:5659678-5821370:-,ring_finger_protein_216	BT20_BREAST	0.4	0.48	0.2996	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	EGFR--RP11-420L9.5	14	11	EGFR	42042	chr7:55324085:+	RP11-420L9.5	45436	chr6:3751510:+	INCL_NON_REF_SPLICE	YES	22	2	0.53	0.93	0.1165	0.0915	EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,RP11-420L9.5->chr6:3751345-3754105:+	BT20_BREAST	0.53	0.93	0.208	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	10	23	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6591	1	0	0.97	0.0832	0.1914	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0	0.97	0.2746	FALSE	344	827	44	306	0	FALSE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	9	23	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	26	1	0.55	0.97	0.0749	0.1914	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0.55	0.97	0.2663	FALSE	344	826	44	306	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO1	14	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	6184	20775	0	0	0.1165	0.0166	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	0	0.1331	FALSE	183	104	9	328	0	FALSE	ACH-000536
BT20_BREAST	VOPP1--TYW1	6	34	VOPP1	17158	chr7:55559975:-	TYW1	37326	chr7:66548417:+	ONLY_REF_SPLICE	YES	552	108	0.07	0.27	0.0499	0.283	VOPP1->chr7:55503749-55640681:-,vesicular,_overexpressed_in_cancer,_prosurvival_protein_1,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	BT20_BREAST	0.07	0.27	0.3329	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	3	41	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	5	1	0.9	0.98	0.025	0.3412	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0.9	0.98	0.3662	FALSE	344	821	44	306	0	FALSE	ACH-000536
BT20_BREAST	MT-ND6--MT-TE	8	21	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0666	0.1748	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT20_BREAST	0.97	1	0.2414	FALSE	499	1288	110	792	0	FALSE	ACH-000536
BT20_BREAST	PLEKHB2--ARHGEF4	9	17	PLEKHB2	5988	chr2:131878551:+	ARHGEF4	33871	chr2:131796426:+	ONLY_REF_SPLICE	YES	122	9	0.18	0.74	0.0749	0.1415	GTEx_v2:{count=1;pct=0.01%;dist=Pituitary=1},HGNC_GENEFAM,{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[57584],PLEKHB2->chr2:131862420-132111282:+,pleckstrin_homology_domain_containing_B2,ARHGEF4->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_4,chr2:131594489-131804836:+	BT20_BREAST	0.18	0.74	0.2164	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	RP4-735C1.4--FNDC7	12	5	RP4-735C1.4	1249	chr1:110268690:+	FNDC7	9682	chr1:109260399:+	ONLY_REF_SPLICE	YES	20	8	0.46	0.68	0.0999	0.0416	RP4-735C1.4->chr1:110268442-110317874:+,FNDC7->chr1:109255279-109285365:+,fibronectin_type_III_domain_containing_7	BT20_BREAST	0.46	0.68	0.1415	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	PVT1--RP11-382A18.2	3	40	PVT1	2520	chr8:128808317:+	RP11-382A18.2	28458	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	78	0	0.36	1	0.025	0.3329	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-382A18.2->chr8:128351519-128404876:+	BT20_BREAST	0.36	1	0.3579	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO1	12	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	6238	21191	0	0	0.0999	0.0166	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	0	0.1165	FALSE	183	104	9	328	0	FALSE	ACH-000536
BT20_BREAST	RP11-114H23.1--RP11-114H23.2	11	6	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0915	0.0499	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	BT20_BREAST	0.94	1	0.1414	FALSE	81	155	12	160	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO2	11	3	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	47	2	0.23	0.88	0.0915	0.025	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BT20_BREAST	0.23	0.88	0.1165	FALSE	59	21	0	114	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO2	10	7	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	58	2	0.23	0.89	0.0832	0.0583	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BT20_BREAST	0.23	0.89	0.1415	FALSE	59	21	0	114	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-RNR2	11	2	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	8126	7840	0	0	0.0915	0.0166	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT20_BREAST	0	0	0.1081	FALSE	63	17	1	58	0	FALSE	ACH-000536
BT20_BREAST	NRIP1--AF127936.7	9	10	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	31	0	0.38	1	0.0749	0.0832	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BT20_BREAST	0.38	1	0.1581	FALSE	125	705	46	456	0	FALSE	ACH-000536
BT20_BREAST	TNRC18--RNF216	5	26	TNRC18	4905	chr7:5446781:-	RNF216	47495	chr7:5800769:-	ONLY_REF_SPLICE	YES	41	53	0.43	0.37	0.0416	0.2164	YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,RNF216->Oncogene{Bushman},chr7:5659678-5821370:-,ring_finger_protein_216	BT20_BREAST	0.37	0.43	0.258	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	5	23	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	339	1	0.08	0.97	0.0416	0.1914	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0.08	0.97	0.233	FALSE	344	827	44	306	0	FALSE	ACH-000536
BT20_BREAST	RP4-735C1.4--FNDC7	8	11	RP4-735C1.4	1249	chr1:110268690:+	FNDC7	7884	chr1:109255354:+	INCL_NON_REF_SPLICE	YES	20	0	0.49	1	0.0666	0.0915	RP4-735C1.4->chr1:110268442-110317874:+,FNDC7->chr1:109255279-109285365:+,fibronectin_type_III_domain_containing_7	BT20_BREAST	0.49	1	0.1581	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	MT-ATP6--MT-RNR2	10	2	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	7554	7815	0	0	0.0832	0.0166	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT20_BREAST	0	0	0.0998	FALSE	63	17	1	58	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO2	9	5	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	58	2	0.19	0.88	0.0749	0.0416	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BT20_BREAST	0.19	0.88	0.1165	FALSE	59	21	0	114	0	FALSE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	5	21	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	15	1	0.63	0.96	0.0416	0.1748	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0.63	0.96	0.2164	FALSE	344	826	44	306	0	FALSE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	4	25	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	5	2	0.85	0.94	0.0333	0.2081	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0.85	0.94	0.2414	FALSE	344	826	44	306	0	FALSE	ACH-000536
BT20_BREAST	RP11-673C5.1--RP11-112H10.6	10	0	RP11-673C5.1	1629	chr15:71457126:-	RP11-112H10.6	5396	chr17:56553562:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0832	0	RP11-673C5.1->chr15:71457109-71457754:-,RP11-112H10.6->chr17:56553499-56554311:-	BT20_BREAST	1	1	0.0832	TRUE	0	0	0	2	0	TRUE	ACH-000536
BT20_BREAST	FIGN--MLTK	8	6	FIGN	2110	chr2:164591413:-	MLTK	18655	chr2:173955726:+	ONLY_REF_SPLICE	YES	6	22	0.7	0.39	0.0666	0.0499	FIGN->chr2:164449906-164592522:-,fidgetin,MLTK->chr2:173940163-174132738:+	BT20_BREAST	0.39	0.7	0.1165	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	APP--MT-ND2	9	0	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0749	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	BT20_BREAST	1	1	0.0749	FALSE	0	1	0	51	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-RNR2	9	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0749	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT20_BREAST	1	1	0.0749	FALSE	63	17	1	58	0	FALSE	ACH-000536
BT20_BREAST	NOTCH1--GABBR2	8	4	NOTCH1	22118	chr9:139396200:-	GABBR2	48390	chr9:101073487:-	ONLY_REF_SPLICE	YES	21	12	0.36	0.5	0.0666	0.0333	Cosmic{samples=153,mutations=1,papers=1},NOTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:139388896-139440314:-,notch_1,GABBR2->chr9:101050391-101471479:-,gamma-aminobutyric_acid_type_B_receptor_subunit_2	BT20_BREAST	0.36	0.5	0.0999	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	NPM1P24--SET	9	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0749	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BT20_BREAST	1	1	0.0749	TRUE	0	0	0	434	0	FALSE	ACH-000536
BT20_BREAST	CIZ1--LCN2	5	15	CIZ1	10518	chr9:130939845:-	LCN2	22204	chr9:130913917:+	ONLY_REF_SPLICE	YES	474	1130	0.04	0.02	0.0416	0.1248	{Klijn_CCL:Breast=1},LOCAL_INVERSION:-:+:[12609],CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-,LCN2->chr9:130911350-130915734:+,lipocalin_2	BT20_BREAST	0.02	0.04	0.1664	TRUE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	5	14	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	45	0	0.3	1	0.0416	0.1165	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0.3	1	0.1581	FALSE	344	827	44	306	0	FALSE	ACH-000536
BT20_BREAST	MT-ND5--MT-ATP8	8	1	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4362	33	0	0.21	0.0666	0.0083	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT20_BREAST	0	0.21	0.0749	FALSE	43	37	8	105	0	FALSE	ACH-000536
BT20_BREAST	MT-ND6--MT-TE	5	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0.1082	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT20_BREAST	1	1	0.1498	FALSE	499	1288	110	792	0	FALSE	ACH-000536
BT20_BREAST	HSP90AB1--MT-RNR2	7	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2288	0	0	1	0.0583	0.025	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT20_BREAST	0	1	0.0833	FALSE	13	9	0	364	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO2	6	7	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	57	2	0.19	0.87	0.0499	0.0583	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BT20_BREAST	0.19	0.87	0.1082	FALSE	59	21	0	114	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO2	6	7	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	58	2	0.18	0.87	0.0499	0.0583	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BT20_BREAST	0.18	0.87	0.1082	FALSE	59	21	0	114	0	FALSE	ACH-000536
BT20_BREAST	ACTN4--MT-CO1	7	2	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	1325	20796	0.01	0	0.0583	0.0166	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	0.01	0.0749	FALSE	0	0	0	30	0	FALSE	ACH-000536
BT20_BREAST	FIGN--MLTK	7	2	FIGN	1175	chr2:164592348:-	MLTK	18655	chr2:173955726:+	ONLY_REF_SPLICE	YES	1	22	0.9	0.29	0.0583	0.0166	FIGN->chr2:164449906-164592522:-,fidgetin,MLTK->chr2:173940163-174132738:+	BT20_BREAST	0.29	0.9	0.0749	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	RP11-680G10.1--GSE1	7	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	29	1	0.22	0.0583	0.0083	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BT20_BREAST	0.22	1	0.0666	TRUE	458	1351	185	561	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO2	6	4	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	51	2	0.16	0.83	0.0499	0.0333	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BT20_BREAST	0.16	0.83	0.0832	FALSE	59	21	0	114	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-RNR2	6	4	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	8126	0	0	1	0.0499	0.0333	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT20_BREAST	0	1	0.0832	FALSE	63	17	1	58	0	FALSE	ACH-000536
BT20_BREAST	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BT20_BREAST	1	1	0.0583	FALSE	462	80	0	856	0	FALSE	ACH-000536
BT20_BREAST	CTCF--LRRC36	1	22	CTCF	1318	chr16:67596627:+	LRRC36	19947	chr16:67375860:+	ONLY_REF_SPLICE	YES	11	0	0.68	1	0.0083	0.1831	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,LRRC36->chr16:67360701-67419106:+,leucine_rich_repeat_containing_36	BT20_BREAST	0.68	1	0.1914	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	MT-ATP6--MT-RNR2	6	2	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	6369	8194	0	0	0.0499	0.0166	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT20_BREAST	0	0	0.0665	FALSE	63	17	1	58	0	FALSE	ACH-000536
BT20_BREAST	PLXDC1--TAF13	6	2	PLXDC1	27520	chr17:37222840:-	TAF13	38540	chr1:109605627:-	INCL_NON_REF_SPLICE	YES	1	290	0.89	0.03	0.0499	0.0166	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	BT20_BREAST	0.03	0.89	0.0665	TRUE	7	10	0	216	0	FALSE	ACH-000536
BT20_BREAST	ACTB--KRT7	6	1	ACTB	6632	chr7:5568016:-	KRT7	20424	chr12:52639273:+	INCL_NON_REF_SPLICE	NO	7589	5167	0	0	0.0499	0.0083	ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,KRT7->chr12:52626304-52645970:+,keratin_7	BT20_BREAST	0	0	0.0582	FALSE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	120	1	0.06	0.0499	0.0083	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BT20_BREAST	0.06	1	0.0582	TRUE	465	1949	224	605	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-RNR2	6	0	MT-ATP6	1132	chrM:8658:+	MT-RNR2	5436	chrM:2425:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT20_BREAST	1	1	0.0499	FALSE	63	17	1	58	0	FALSE	ACH-000536
BT20_BREAST	MT-ND6--MT-ND5	6	0	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	BT20_BREAST	1	1	0.0499	FALSE	101	855	57	72	0	FALSE	ACH-000536
BT20_BREAST	MT-TA--MT-TC	6	0	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BT20_BREAST	1	1	0.0499	FALSE	462	80	0	856	0	FALSE	ACH-000536
BT20_BREAST	NRIP1--AF127936.7	3	12	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	46	0	0.25	1	0.025	0.0999	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BT20_BREAST	0.25	1	0.1249	FALSE	164	806	69	479	0	FALSE	ACH-000536
BT20_BREAST	VOPP1--TYW1	3	12	VOPP1	17158	chr7:55559975:-	TYW1	38436	chr7:66563528:+	ONLY_REF_SPLICE	YES	552	101	0.03	0.13	0.025	0.0999	VOPP1->chr7:55503749-55640681:-,vesicular,_overexpressed_in_cancer,_prosurvival_protein_1,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	BT20_BREAST	0.03	0.13	0.1249	TRUE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO1	5	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	8776	0	0	1	0.0416	0.025	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	1	0.0666	FALSE	182	97	9	327	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO1	5	2	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	8681	19266	0	0	0.0416	0.0166	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	0	0.0582	FALSE	183	104	9	328	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO1	5	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8776	21123	0	0	0.0416	0.0166	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	0	0.0582	FALSE	183	104	9	328	0	FALSE	ACH-000536
BT20_BREAST	MT-ND5--MT-ATP8	5	2	MT-ND5	2303	chrM:13639:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2302	3	0	0.7	0.0416	0.0166	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT20_BREAST	0	0.7	0.0582	FALSE	43	37	8	105	0	FALSE	ACH-000536
BT20_BREAST	RP11-123O10.4--GRIP1	4	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0333	0.0499	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BT20_BREAST	1	1	0.0832	FALSE	93	270	15	244	0	FALSE	ACH-000536
BT20_BREAST	APP--MT-ND2	5	1	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	1554	4167	0	0	0.0416	0.0083	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	BT20_BREAST	0	0	0.0499	FALSE	0	1	0	51	0	FALSE	ACH-000536
BT20_BREAST	GINS2--EMC8	5	1	GINS2	5841	chr16:85712146:-	EMC8	19071	chr16:85805497:-	ONLY_REF_SPLICE	YES	318	0	0.02	1	0.0416	0.0083	LOCAL_REARRANGEMENT:-:[81685],GINS2->GINS_complex_subunit_2,chr16:85709804-85723679:-,EMC8->ER_membrane_protein_complex_subunit_8,chr16:85805364-85833214:-	BT20_BREAST	0.02	1	0.0499	TRUE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	CIZ1--LCN2	1	16	CIZ1	10518	chr9:130939845:-	LCN2	20941	chr9:130912654:+	ONLY_REF_SPLICE	NO	474	1030	0.03	0.02	0.0083	0.1332	{Klijn_CCL:Breast=1},LOCAL_INVERSION:-:+:[12609],CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-,LCN2->chr9:130911350-130915734:+,lipocalin_2	BT20_BREAST	0.02	0.03	0.1415	TRUE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	MT-ND6--MT-TE	4	4	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0.0333	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT20_BREAST	1	1	0.0666	FALSE	499	1288	110	792	0	FALSE	ACH-000536
BT20_BREAST	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT20_BREAST	1	1	0.0416	FALSE	499	1288	110	792	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO1	4	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3233	21469	0	0	0.0333	0.025	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	0	0.0583	FALSE	183	104	9	328	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO2	4	3	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	43	2	0.14	0.78	0.0333	0.025	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BT20_BREAST	0.14	0.78	0.0583	FALSE	59	21	0	114	0	FALSE	ACH-000536
BT20_BREAST	CTCF--LRRC36	1	14	CTCF	1318	chr16:67596627:+	LRRC36	24422	chr16:67384105:+	ONLY_REF_SPLICE	YES	11	24	0.58	0.38	0.0083	0.1165	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,LRRC36->chr16:67360701-67419106:+,leucine_rich_repeat_containing_36	BT20_BREAST	0.38	0.58	0.1248	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO1	4	2	MT-ATP6	1098	chrM:8624:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	5392	21469	0	0	0.0333	0.0166	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	0	0.0499	FALSE	183	104	9	328	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO1	4	2	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	5760	18942	0	0	0.0333	0.0166	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	0	0.0499	FALSE	183	104	9	328	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO1	4	2	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	6100	21123	0	0	0.0333	0.0166	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	0	0.0499	FALSE	183	104	9	328	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO1	4	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	7980	19318	0	0	0.0333	0.0166	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	0	0.0499	FALSE	183	104	9	328	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO1	4	2	MT-ATP6	1121	chrM:8647:+	MT-CO1	4698	chrM:5920:+	INCL_NON_REF_SPLICE	YES	6056	0	0	1	0.0333	0.0166	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	1	0.0499	FALSE	182	97	9	327	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-RNR2	4	2	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	7520	7830	0	0	0.0333	0.0166	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT20_BREAST	0	0	0.0499	FALSE	63	17	1	58	0	FALSE	ACH-000536
BT20_BREAST	MT-ND6--MT-ND5	4	2	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	2928	1	0	0.0333	0.0166	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	BT20_BREAST	0	1	0.0499	FALSE	101	855	57	72	0	FALSE	ACH-000536
BT20_BREAST	CTCF--LRRC36	1	13	CTCF	1318	chr16:67596627:+	LRRC36	26633	chr16:67397493:+	ONLY_REF_SPLICE	YES	11	34	0.56	0.29	0.0083	0.1082	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,LRRC36->chr16:67360701-67419106:+,leucine_rich_repeat_containing_36	BT20_BREAST	0.29	0.56	0.1165	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	MORC3--DOPEY2	3	5	MORC3	18015	chr21:37742174:+	DOPEY2	66892	chr21:37660382:+	INCL_NON_REF_SPLICE	YES	43	42	0.16	0.16	0.025	0.0416	GTEx_v2:{count=2;pct=0.02%;dist=Breast_-_Mammary_Tissue=1,Heart_-_Atrial_Appendage=1},LOCAL_REARRANGEMENT:+:[25915],MORC3->MORC_family_CW-type_zinc_finger_3,chr21:37692487-37758446:+,DOPEY2->Oncogene{Bushman},chr21:37529080-37666572:+,dopey_family_member_2	BT20_BREAST	0.16	0.16	0.0666	TRUE	0	1	0	1	0	TRUE	ACH-000536
BT20_BREAST	MORC3--DOPEY2	4	1	MORC3	16126	chr21:37736557:+	DOPEY2	66892	chr21:37660382:+	INCL_NON_REF_SPLICE	YES	54	42	0.08	0.11	0.0333	0.0083	GTEx_v2:{count=2;pct=0.02%;dist=Breast_-_Mammary_Tissue=1,Heart_-_Atrial_Appendage=1},LOCAL_REARRANGEMENT:+:[25915],MORC3->MORC_family_CW-type_zinc_finger_3,chr21:37692487-37758446:+,DOPEY2->Oncogene{Bushman},chr21:37529080-37666572:+,dopey_family_member_2	BT20_BREAST	0.08	0.11	0.0416	TRUE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO2	4	1	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	45	3	0.1	0.62	0.0333	0.0083	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BT20_BREAST	0.1	0.62	0.0416	FALSE	59	21	0	114	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT20_BREAST	1	1	0.0333	FALSE	63	17	1	58	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT20_BREAST	1	1	0.0333	FALSE	63	17	1	58	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1110	chrM:8636:+	MT-RNR2	5247	chrM:2236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT20_BREAST	1	1	0.0333	FALSE	63	17	1	58	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1125	chrM:8651:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT20_BREAST	1	1	0.0333	FALSE	63	17	1	58	0	FALSE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	3	4	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	1	1	0.88	0.88	0.025	0.0333	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0.88	0.88	0.0583	FALSE	344	821	44	306	0	FALSE	ACH-000536
BT20_BREAST	MT-ND5--MT-ATP8	4	0	MT-ND5	2466	chrM:13802:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT20_BREAST	1	1	0.0333	FALSE	43	37	8	105	0	FALSE	ACH-000536
BT20_BREAST	MT-ND6--MT-ND5	4	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	BT20_BREAST	1	1	0.0333	FALSE	101	855	57	72	0	FALSE	ACH-000536
BT20_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1051	chrM:14623:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT20_BREAST	1	1	0.0333	FALSE	499	1288	110	792	0	FALSE	ACH-000536
BT20_BREAST	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BT20_BREAST	1	1	0.0333	TRUE	0	0	0	434	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO1	3	3	MT-ATP6	1504	chrM:9030:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	6054	21469	0	0	0.025	0.025	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	0	0.05	FALSE	183	104	9	328	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO1	3	3	MT-ATP6	1516	chrM:9042:+	MT-CO1	5332	chrM:6554:+	INCL_NON_REF_SPLICE	NO	5340	21312	0	0	0.025	0.025	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	0	0.05	FALSE	183	104	9	328	0	FALSE	ACH-000536
BT20_BREAST	CTCF--LRRC36	2	6	CTCF	1318	chr16:67596627:+	LRRC36	32571	chr16:67409150:+	ONLY_REF_SPLICE	YES	11	36	0.42	0.18	0.0166	0.0499	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,LRRC36->chr16:67360701-67419106:+,leucine_rich_repeat_containing_36	BT20_BREAST	0.18	0.42	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	HSP90AB1--MT-RNR2	3	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2292	0	0	1	0.025	0.0166	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT20_BREAST	0	1	0.0416	FALSE	13	9	0	364	0	FALSE	ACH-000536
BT20_BREAST	JUP--MT-CO3	3	2	JUP	8242	chr17:39923795:-	MT-CO3	24128	chrM:9574:+	INCL_NON_REF_SPLICE	YES	311	12419	0.02	0	0.025	0.0166	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BT20_BREAST	0	0.02	0.0416	FALSE	0	0	0	33	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO1	3	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	6075	18640	0	0	0.025	0.0166	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	0	0.0416	FALSE	183	104	9	328	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO1	3	2	MT-ATP6	1153	chrM:8679:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	8195	17958	0	0	0.025	0.0166	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	0	0.0416	FALSE	183	104	9	328	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO1	3	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	6075	21123	0	0	0.025	0.0166	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	0	0.0416	FALSE	183	104	9	328	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	8776	19173	0	0	0.025	0.0166	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT20_BREAST	0	0	0.0416	FALSE	183	104	9	328	0	FALSE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	3	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.83	0.025	0.0166	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0.83	1	0.0416	FALSE	344	821	44	306	0	FALSE	ACH-000536
BT20_BREAST	MT-ND6--MT-ND5	3	2	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	3052	1	0	0.025	0.0166	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	BT20_BREAST	0	1	0.0416	FALSE	101	855	57	72	0	FALSE	ACH-000536
BT20_BREAST	MT-ND6--MT-TE	3	2	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.025	0.0166	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT20_BREAST	0.56	1	0.0416	FALSE	499	1288	110	792	0	FALSE	ACH-000536
BT20_BREAST	TNRC18--RNF216	3	2	TNRC18	1124	chr7:5464922:-	RNF216	47495	chr7:5800769:-	ONLY_REF_SPLICE	YES	2	53	0.71	0.09	0.025	0.0166	YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,RNF216->Oncogene{Bushman},chr7:5659678-5821370:-,ring_finger_protein_216	BT20_BREAST	0.09	0.71	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	CYC1--KRT5	3	1	CYC1	2224	chr8:145151153:+	KRT5	7264	chr12:52913707:-	ONLY_REF_SPLICE	YES	481	1383	0.01	0	0.025	0.0083	CYC1->chr8:145149930-145152428:+,cytochrome_c1,KRT5->chr12:52908359-52914471:-,keratin_5	BT20_BREAST	0	0.01	0.0333	FALSE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	GINS2--EMC8	3	1	GINS2	6226	chr16:85711761:-	EMC8	19071	chr16:85805497:-	INCL_NON_REF_SPLICE	YES	232	0	0.02	1	0.025	0.0083	LOCAL_REARRANGEMENT:-:[81685],GINS2->GINS_complex_subunit_2,chr16:85709804-85723679:-,EMC8->ER_membrane_protein_complex_subunit_8,chr16:85805364-85833214:-	BT20_BREAST	0.02	1	0.0333	TRUE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	3	1	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.8	0.025	0.0083	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0.8	1	0.0333	FALSE	344	821	44	306	0	FALSE	ACH-000536
BT20_BREAST	MT-ND4--MT-ND4L	3	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	0	2	1	0.67	0.025	0.0083	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT20_BREAST	0.67	1	0.0333	FALSE	344	821	44	306	0	FALSE	ACH-000536
BT20_BREAST	MSH3--RASGRF2	3	0	MSH3	14858	chr5:80040434:+	RASGRF2	34356	chr5:80338696:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[84212],MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3,RASGRF2->Oncogene{Bushman},Ras_protein_specific_guanine_nucleotide_releasing_factor_2,chr5:80256491-80525975:+	BT20_BREAST	1	1	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1100	chrM:8626:+	MT-RNR2	5246	chrM:2235:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT20_BREAST	1	1	0.025	FALSE	63	17	1	58	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1111	chrM:8637:+	MT-RNR2	5402	chrM:2391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT20_BREAST	1	1	0.025	FALSE	63	17	1	58	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1126	chrM:8652:+	MT-RNR2	5532	chrM:2521:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT20_BREAST	1	1	0.025	FALSE	63	17	1	58	0	FALSE	ACH-000536
BT20_BREAST	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BT20_BREAST	1	1	0.025	FALSE	63	17	1	58	0	FALSE	ACH-000536
BT20_BREAST	MT-ND5--MT-ATP8	3	0	MT-ND5	1648	chrM:12984:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT20_BREAST	1	1	0.025	FALSE	42	36	7	104	0	FALSE	ACH-000536
BT20_BREAST	MT-ND6--MT-ND5	3	0	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	BT20_BREAST	1	1	0.025	FALSE	101	855	57	72	0	FALSE	ACH-000536
BT20_BREAST	MT-ND6--MT-ND5	3	0	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	BT20_BREAST	1	1	0.025	FALSE	101	855	57	72	0	FALSE	ACH-000536
BT20_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT20_BREAST	1	1	0.025	FALSE	499	1288	110	792	0	FALSE	ACH-000536
BT20_BREAST	NTN4--RP11-536G4.2	3	0	NTN4	3897	chr12:96180717:-	RP11-536G4.2	21094	chr12:96226862:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_REARRANGEMENT:-:[4193],NTN4->chr12:96051583-96184930:-,netrin_4,RP11-536G4.2->chr12:96189123-96252617:-	BT20_BREAST	1	1	0.025	TRUE	0	1	0	1	1	TRUE	ACH-000536
BT20_BREAST	CTCF--LRRC36	1	6	CTCF	1318	chr16:67596627:+	LRRC36	32582	chr16:67409161:+	ONLY_REF_SPLICE	YES	11	34	0.39	0.17	0.0083	0.0499	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,LRRC36->chr16:67360701-67419106:+,leucine_rich_repeat_containing_36	BT20_BREAST	0.17	0.39	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	RP11-114H23.1--RP11-114H23.2	1	6	RP11-114H23.1	7093	chr12:76024947:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0083	0.0499	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	BT20_BREAST	1	1	0.0582	FALSE	0	0	0	3	0	FALSE	ACH-000536
BT20_BREAST	RP4-735C1.4--FNDC7	1	6	RP4-735C1.4	1249	chr1:110268690:+	FNDC7	8663	chr1:109256133:+	ONLY_REF_SPLICE	NO	20	7	0.26	0.5	0.0083	0.0499	RP4-735C1.4->chr1:110268442-110317874:+,FNDC7->chr1:109255279-109285365:+,fibronectin_type_III_domain_containing_7	BT20_BREAST	0.26	0.5	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	CORO7--NMRAL1	2	1	CORO7	7741	chr16:4462357:-	NMRAL1	34176	chr16:4524793:-	ONLY_REF_SPLICE	YES	18	0	0.14	1	0.0166	0.0083	LOCAL_REARRANGEMENT:-:[35975],CORO7->chr16:4404543-4475706:-,coronin_7,NMRAL1->NmrA-like_family_domain_containing_1,chr16:4511681-4545764:-	BT20_BREAST	0.14	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0166	0.0083	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BT20_BREAST	0.75	1	0.0249	FALSE	515	4851	409	746	0	FALSE	ACH-000536
BT20_BREAST	XPO1--PUS10	2	1	XPO1	8659	chr2:61749746:-	PUS10	33858	chr2:61239040:-	ONLY_REF_SPLICE	YES	243	25	0.01	0.11	0.0166	0.0083	XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1,PUS10->Oncogene{Bushman},chr2:61167357-61245394:-,pseudouridylate_synthase_10	BT20_BREAST	0.01	0.11	0.0249	FALSE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	ACTB--KRT7	2	0	ACTB	4493	chr7:5570155:-	KRT7	11623	chr12:52627060:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,KRT7->chr12:52626304-52645970:+,keratin_7	BT20_BREAST	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	METTL15--RBM26	2	0	METTL15	3728	chr11:28135151:+	RBM26	45503	chr13:79889128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	METTL15->chr11:28129795-28355054:+,methyltransferase_like_15,RBM26->RNA_binding_motif_protein_26,chr13:79885962-79980612:-	BT20_BREAST	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	NCOA3--NFYB	2	0	NCOA3	1163	chr20:46130763:+	NFYB	31446	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	BT20_BREAST	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	BT20_BREAST	1	1	0.0166	TRUE	145	312	16	51	0	FALSE	ACH-000536
BT20_BREAST	PXDC1--EGFR-AS1	2	0	PXDC1	1751	chr6:3751510:-	EGFR-AS1	12148	chr7:55250170:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	PXDC1->PX_domain_containing_1,chr6:3722848-3752260:-,EGFR-AS1->EGFR_antisense_RNA_1,chr7:55247443-55256627:-	BT20_BREAST	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	RP11-319G9.5--WWOX	2	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	BT20_BREAST	1	1	0.0166	FALSE	154	425	28	76	0	FALSE	ACH-000536
BT20_BREAST	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0083	0.0333	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BT20_BREAST	0.83	1	0.0416	FALSE	407	2205	196	549	0	FALSE	ACH-000536
BT20_BREAST	ST14--APLP2	2	0	ST14	1499	chr11:130029955:+	APLP2	22856	chr11:129979324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	LOCAL_REARRANGEMENT:+:[14758],ST14->chr11:130029457-130080271:+,suppression_of_tumorigenicity_14,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	BT20_BREAST	1	1	0.0166	TRUE	0	2	0	3	1	TRUE	ACH-000536
BT20_BREAST	TMEM9B--ZCCHC14	2	0	TMEM9B	1122	chr11:8986437:-	ZCCHC14	25362	chr16:87443941:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-,ZCCHC14->chr16:87439852-87525651:-,zinc_finger_CCHC-type_containing_14	BT20_BREAST	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	LRRC28--IL27	1	3	LRRC28	4123	chr15:99816821:+	IL27	34172	chr16:28515371:-	ONLY_REF_SPLICE	YES	12	0	0.25	1	0.0083	0.025	LRRC28->chr15:99791567-99930934:+,leucine_rich_repeat_containing_28,IL27->chr16:28510683-28523372:-,interleukin_27	BT20_BREAST	0.25	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	RP11-114H23.1--RP11-114H23.2	1	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	NO	1	1	0.8	0.8	0.0083	0.025	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	BT20_BREAST	0.8	0.8	0.0333	FALSE	81	155	12	160	0	FALSE	ACH-000536
BT20_BREAST	VOPP1--TYW1	1	3	VOPP1	17158	chr7:55559975:-	TYW1	39614	chr7:66582470:+	ONLY_REF_SPLICE	YES	552	142	0.01	0.03	0.0083	0.025	VOPP1->chr7:55503749-55640681:-,vesicular,_overexpressed_in_cancer,_prosurvival_protein_1,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	BT20_BREAST	0.01	0.03	0.0333	FALSE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	FIGN--MLTK	1	2	FIGN	2110	chr2:164591413:-	MLTK	21246	chr2:174034533:+	ONLY_REF_SPLICE	YES	6	80	0.33	0.04	0.0083	0.0166	FIGN->chr2:164449906-164592522:-,fidgetin,MLTK->chr2:173940163-174132738:+	BT20_BREAST	0.04	0.33	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	SIL1--CTNNA1	1	2	SIL1	15184	chr5:138456724:-	CTNNA1	38160	chr5:138117612:+	ONLY_REF_SPLICE	YES	68	14	0.04	0.18	0.0083	0.0166	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=6;pct=0.07%;dist=Cells_-_Transformed_fibroblasts=2,Artery_-_Aorta=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1},{Klijn_CCL:Skin=1},LOCAL_INVERSION:-:+:[11686],SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	BT20_BREAST	0.04	0.18	0.0249	TRUE	0	1	0	2	0	TRUE	ACH-000536
BT20_BREAST	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	2472	174	0	0.02	0.0083	0.0166	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	BT20_BREAST	0	0.02	0.0249	FALSE	6	50	7	115	0	FALSE	ACH-000536
BT20_BREAST	GINS2--EMC8	1	1	GINS2	4714	chr16:85715188:-	EMC8	19071	chr16:85805497:-	ONLY_REF_SPLICE	YES	381	0	0.01	1	0.0083	0.0083	LOCAL_REARRANGEMENT:-:[81685],GINS2->GINS_complex_subunit_2,chr16:85709804-85723679:-,EMC8->ER_membrane_protein_complex_subunit_8,chr16:85805364-85833214:-	BT20_BREAST	0.01	1	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	GOLGB1--ILDR1	1	1	GOLGB1	5721	chr3:121445760:-	ILDR1	41585	chr3:121707255:-	ONLY_REF_SPLICE	YES	49	20	0.04	0.09	0.0083	0.0083	GOLGB1->chr3:121382046-121468602:-,golgin_B1,ILDR1->chr3:121706170-121741051:-,immunoglobulin_like_domain_containing_receptor_1	BT20_BREAST	0.04	0.09	0.0166	TRUE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	MIR205HG--C9orf3	1	1	MIR205HG	2657	chr1:209603821:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	NO	60	263	0.03	0.01	0.0083	0.0083	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	BT20_BREAST	0.01	0.03	0.0166	FALSE	7	55	2	6	0	FALSE	ACH-000536
BT20_BREAST	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	4	13	0.33	0.13	0.0083	0.0083	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BT20_BREAST	0.13	0.33	0.0166	FALSE	25	145	6	90	0	FALSE	ACH-000536
BT20_BREAST	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	46	13	0.04	0.13	0.0083	0.0083	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BT20_BREAST	0.04	0.13	0.0166	FALSE	8	57	1	47	0	FALSE	ACH-000536
BT20_BREAST	P4HB--PLEC	1	1	P4HB	1348	chr17:79818223:-	PLEC	29408	chr8:145009481:-	ONLY_REF_SPLICE	YES	907	283	0	0.01	0.0083	0.0083	P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta,PLEC->chr8:144989321-145050902:-,plectin	BT20_BREAST	0	0.01	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	PLEKHB2--ARHGEF4	1	1	PLEKHB2	1552	chr2:131862971:+	ARHGEF4	33871	chr2:131796426:+	ONLY_REF_SPLICE	NO	4	9	0.33	0.18	0.0083	0.0083	GTEx_v2:{count=1;pct=0.01%;dist=Pituitary=1},HGNC_GENEFAM,{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[57584],PLEKHB2->chr2:131862420-132111282:+,pleckstrin_homology_domain_containing_B2,ARHGEF4->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_4,chr2:131594489-131804836:+	BT20_BREAST	0.18	0.33	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	PLEKHB2--ARHGEF4	1	1	PLEKHB2	1552	chr2:131862971:+	ARHGEF4	31017	chr2:131785518:+	ONLY_REF_SPLICE	NO	4	1	0.33	0.67	0.0083	0.0083	GTEx_v2:{count=1;pct=0.01%;dist=Pituitary=1},HGNC_GENEFAM,{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[57584],PLEKHB2->chr2:131862420-132111282:+,pleckstrin_homology_domain_containing_B2,ARHGEF4->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_4,chr2:131594489-131804836:+	BT20_BREAST	0.33	0.67	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000536
BT20_BREAST	RAD23B--PABPC1	1	1	RAD23B	7264	chr9:110074018:+	PABPC1	19216	chr8:101734117:-	ONLY_REF_SPLICE	YES	1080	494	0	0	0.0083	0.0083	RAD23B->Oncogene{Bushman},RAD23_homolog_B,_nucleotide_excision_repair_protein,chr9:110045418-110094475:+,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	BT20_BREAST	0	0	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	RHOA--QRICH1	1	1	RHOA	2179	chr3:49449253:-	QRICH1	17997	chr3:49114471:-	ONLY_REF_SPLICE	YES	1429	119	0	0.02	0.0083	0.0083	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,QRICH1->chr3:49067140-49131796:-,glutamine_rich_1	BT20_BREAST	0	0.02	0.0166	FALSE	0	2	0	4	0	FALSE	ACH-000536
BT20_BREAST	SP3--TLK1	1	1	SP3	6091	chr2:174819601:-	TLK1	26165	chr2:171974367:-	ONLY_REF_SPLICE	YES	354	100	0.01	0.02	0.0083	0.0083	SP3->Sp3_transcription_factor,chr2:174771187-174830430:-,TLK1->chr2:171847333-172087824:-,tousled_like_kinase_1	BT20_BREAST	0.01	0.02	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	UBAP1--UBAP2	1	1	UBAP1	1236	chr9:34179238:+	UBAP2	31084	chr9:33953472:-	ONLY_REF_SPLICE	NO	162	135	0.01	0.01	0.0083	0.0083	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	BT20_BREAST	0.01	0.01	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000536
BT20_BREAST	UVSSA--CTBP1	1	1	UVSSA	1924	chr4:1341977:+	CTBP1	24040	chr4:1235307:-	ONLY_REF_SPLICE	YES	23	58	0.08	0.03	0.0083	0.0083	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	BT20_BREAST	0.03	0.08	0.0166	TRUE	2	0	0	2	0	FALSE	ACH-000536
SW1710_URINARY_TRACT	XPC--MT-CO3	56	0	XPC	10771	chr3:14199683:-	MT-CO3	20908	chrM:9256:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7623	0	XPC->Oncogene{Bushman},chr3:14186647-14220283:-,xeroderma_pigmentosum,_complementation_group_C,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SW1710_URINARY_TRACT	1	1	0.7623	FALSE	0	0	0	1	0	FALSE	ACH-000566
SW1710_URINARY_TRACT	ST5--FABP1	37	3	ST5	13406	chr11:8832794:-	FABP1	56004	chr2:88422623:-	ONLY_REF_SPLICE	YES	3	0	0.93	1	0.5036	0.0408	ST5->Oncogene{Bushman},chr11:8714898-8932498:-,suppression_of_tumorigenicity_5,FABP1->chr2:88422510-88427635:-,fatty_acid_binding_protein_1	SW1710_URINARY_TRACT	0.93	1	0.5444	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	MT-TA--MT-TC	26	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3539	0.0817	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW1710_URINARY_TRACT	1	1	0.4356	FALSE	462	80	0	856	0	FALSE	ACH-000566
SW1710_URINARY_TRACT	ST5--FABP1	23	5	ST5	14136	chr11:8832064:-	FABP1	56004	chr2:88422623:-	ONLY_REF_SPLICE	YES	14	0	0.67	1	0.3131	0.0681	ST5->Oncogene{Bushman},chr11:8714898-8932498:-,suppression_of_tumorigenicity_5,FABP1->chr2:88422510-88427635:-,fatty_acid_binding_protein_1	SW1710_URINARY_TRACT	0.67	1	0.3812	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	MIPEPP3--ABHD12	21	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2859	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	SW1710_URINARY_TRACT	1	1	0.2859	TRUE	64	202	9	44	0	FALSE	ACH-000566
SW1710_URINARY_TRACT	LIX1L--TXNIP	19	4	LIX1L	1366	chr1:145477450:+	TXNIP	14382	chr1:145440902:+	ONLY_REF_SPLICE	YES	13	961	0.64	0.02	0.2586	0.0544	LOCAL_REARRANGEMENT:+:[34450],LIX1L->chr1:145477085-145501669:+,limb_and_CNS_expressed_1_like,TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein	SW1710_URINARY_TRACT	0.02	0.64	0.313	TRUE	0	0	0	1	0	FALSE	ACH-000566
SW1710_URINARY_TRACT	EIF1--DEGS1	14	0	EIF1	1112	chr17:39845248:+	DEGS1	9080	chr1:224370976:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1906	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,DEGS1->chr1:224363458-224381143:+,delta(4)-desaturase,_sphingolipid_1	SW1710_URINARY_TRACT	1	1	0.1906	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	MT-ND6--MT-TE	8	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1089	0.0136	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1710_URINARY_TRACT	1	1	0.1225	FALSE	499	1288	110	792	0	FALSE	ACH-000566
SW1710_URINARY_TRACT	MT-ND6--MT-TE	7	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0953	0.0544	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1710_URINARY_TRACT	1	1	0.1497	FALSE	499	1288	110	792	0	FALSE	ACH-000566
SW1710_URINARY_TRACT	MT-ND6--MT-TE	5	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0681	0.0136	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1710_URINARY_TRACT	1	1	0.0817	FALSE	499	1288	110	792	0	FALSE	ACH-000566
SW1710_URINARY_TRACT	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0681	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SW1710_URINARY_TRACT	1	1	0.0681	TRUE	0	0	0	434	0	FALSE	ACH-000566
SW1710_URINARY_TRACT	NRIP1--AF127936.7	4	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0544	0.0408	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW1710_URINARY_TRACT	0.64	1	0.0952	FALSE	292	1546	117	613	0	FALSE	ACH-000566
SW1710_URINARY_TRACT	MT-TA--MT-TC	3	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0.0817	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW1710_URINARY_TRACT	1	1	0.1225	FALSE	462	80	0	856	0	FALSE	ACH-000566
SW1710_URINARY_TRACT	ACTR3C--RP11-728K20.1	4	0	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	19906	chr7:149588390:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0544	0	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	SW1710_URINARY_TRACT	1	1	0.0544	TRUE	3	46	4	12	0	FALSE	ACH-000566
SW1710_URINARY_TRACT	FN1--MT-CO3	3	4	FN1	40349	chr2:216240085:-	MT-CO3	55141	chrM:9412:+	INCL_NON_REF_SPLICE	YES	3198	6024	0	0	0.0408	0.0544	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SW1710_URINARY_TRACT	0	0	0.0952	FALSE	0	0	0	1	0	FALSE	ACH-000566
SW1710_URINARY_TRACT	ACTR3C--RP11-728K20.1	3	0	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	SW1710_URINARY_TRACT	1	1	0.0408	TRUE	0	5	0	16	1	FALSE	ACH-000566
SW1710_URINARY_TRACT	DBNL--RASA4B	3	0	DBNL	1181	chr7:44084419:+	RASA4B	28214	chr7:102141674:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	DBNL->chr7:44084239-44109055:+,drebrin_like,RASA4B->RAS_p21_protein_activator_4B,chr7:102122892-102158228:-	SW1710_URINARY_TRACT	1	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	DNASE2--MT-ND4	3	0	DNASE2	1493	chr19:12991790:-	MT-ND4	8761	chrM:10903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	DNASE2->chr19:12986025-12992282:-,deoxyribonuclease_II,_lysosomal,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SW1710_URINARY_TRACT	1	1	0.0408	FALSE	0	0	0	1	0	FALSE	ACH-000566
SW1710_URINARY_TRACT	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.4	1	0.0272	0.0544	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW1710_URINARY_TRACT	0.4	1	0.0816	FALSE	164	806	69	479	0	FALSE	ACH-000566
SW1710_URINARY_TRACT	SNX3--RP11-210H10__A.1	2	1	SNX3	1501	chr6:108581964:-	RP11-210H10__A.1	11942	chr6:119103875:+	ONLY_REF_SPLICE	NO	198	0	0.01	1	0.0272	0.0136	SNX3->chr6:108532426-108582464:-,sorting_nexin_3,RP11-210H10__A.1->chr6:119078681-119104583:+	SW1710_URINARY_TRACT	0.01	1	0.0408	FALSE	0	0	0	1	0	FALSE	ACH-000566
SW1710_URINARY_TRACT	APCDD1L-AS1--MRPL45	2	0	APCDD1L-AS1	5901	chr20:57098862:+	MRPL45	23822	chr17:36478009:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+,MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	ARHGAP26--PFDN1	2	0	ARHGAP26	18023	chr5:142311690:+	PFDN1	54264	chr5:139625642:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+,PFDN1->chr5:139624624-139682706:-,prefoldin_subunit_1	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	ATP5C1--PSMB1	2	0	ATP5C1	1135	chr10:7830226:+	PSMB1	15041	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	DCBLD2--LINC00973	2	0	DCBLD2	5444	chr3:98600384:-	LINC00973	31158	chr3:98701308:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	LOCAL_INVERSION:-:+:[79369],DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,LINC00973->chr3:98699902-98701940:+,long_intergenic_non-protein_coding_RNA_973	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	2	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	EPB41L4A--NREP	2	0	EPB41L4A	23542	chr5:111530265:-	NREP	46998	chr5:111071204:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	EPB41L4A->chr5:111478138-111755013:-,erythrocyte_membrane_protein_band_4.1_like_4A,NREP->chr5:110998318-111333161:-,neuronal_regeneration_related_protein	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	FBXO3--CDH2	2	0	FBXO3	17162	chr11:33768676:-	CDH2	28987	chr18:25727748:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	FBXO3->F-box_protein_3,chr11:33762485-33796089:-,CDH2->cadherin_2,chr18:25530930-25757410:-	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	GALNT14--GNAS	2	0	GALNT14	15661	chr2:31215704:-	GNAS	48858	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GALNT14->chr2:31133333-31378068:-,polypeptide_N-acetylgalactosaminyltransferase_14,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	HGSNAT--PRIM2	2	0	HGSNAT	1202	chr8:42995757:+	PRIM2	35720	chr6:57244699:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	HGSNAT->chr8:42995556-43057998:+,heparan-alpha-glucosaminide_N-acetyltransferase,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	NCOA4--IFNGR2	2	0	NCOA4	1189	chr10:51565296:+	IFNGR2	25633	chr21:34804484:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NCOA4->Oncogene{Bushman},chr10:51565108-51590734:+,nuclear_receptor_coactivator_4,IFNGR2->Oncogene{Bushman},chr21:34775202-34851655:+,interferon_gamma_receptor_2_(interferon_gamma_transducer_1)	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	RCC1--PFKM	2	0	RCC1	2920	chr1:28835417:+	PFKM	38914	chr12:48536565:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,PFKM->chr12:48498922-48540187:+,phosphofructokinase,_muscle	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	25217	chrX:10450668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SW1710_URINARY_TRACT	1	1	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000566
SW1710_URINARY_TRACT	RPRD1A--KIAA1468	2	0	RPRD1A	1323	chr18:33647217:-	KIAA1468	24232	chr18:59878386:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,KIAA1468->KIAA1468,chr18:59854491-59974355:+	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	WDSUB1--GLS	2	0	WDSUB1	4047	chr2:160136272:-	GLS	19277	chr2:191765290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	WDSUB1->WD_repeat,_sterile_alpha_motif_and_U-box_domain_containing_1,chr2:160092304-160143310:-,GLS->chr2:191745553-191830278:+,glutaminase	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	YTHDF1--ARFGEF2	2	0	YTHDF1	2738	chr20:61845216:-	ARFGEF2	12843	chr20:47557736:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	YTHDF1->YTH_N6-methyladenosine_RNA_binding_protein_1,chr20:61826781-61847586:-,ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	YWHAQ--C10orf11	2	0	YWHAQ	1856	chr2:9770288:-	C10orf11	17874	chr10:77795766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta,C10orf11->chr10:77360998-78319925:+,chromosome_10_open_reading_frame_11	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	ZBTB38--RPS6KC1	2	0	ZBTB38	1244	chr3:141043298:+	RPS6KC1	47428	chr1:213415912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38,RPS6KC1->chr1:213224589-213448116:+,ribosomal_protein_S6_kinase_C1	SW1710_URINARY_TRACT	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000566
SW1710_URINARY_TRACT	DBF4B--UBTF	1	1	DBF4B	2902	chr17:42800390:+	UBTF	23874	chr17:42295664:-	ONLY_REF_SPLICE	NO	11	29	0.15	0.06	0.0136	0.0136	DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+,UBTF->chr17:42282401-42298994:-,upstream_binding_transcription_factor,_RNA_polymerase_I	SW1710_URINARY_TRACT	0.06	0.15	0.0272	TRUE	0	0	0	2	0	TRUE	ACH-000566
BEN_LUNG	MT-ATP6--MT-CO2	15067	21	MT-ATP6	1408	chrM:8934:+	MT-CO2	5049	chrM:7953:+	INCL_NON_REF_SPLICE	YES	136	33	0.99	1	118.4361	0.1651	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.99	1	118.6012	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	2089	8	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	35	0	0.98	1	16.4209	0.0629	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.98	1	16.4838	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	ITPR2--RP11-625L16.1	421	70	ITPR2	12394	chr12:26839414:-	RP11-625L16.1	69159	chr12:24913064:+	ONLY_REF_SPLICE	YES	240	0	0.67	1	3.3093	0.5502	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,RP11-625L16.1->chr12:24857499-24927147:+	BEN_LUNG	0.67	1	3.8595	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	FGFR1OP2--ITPR2	288	129	FGFR1OP2	3073	chr12:27107226:+	ITPR2	68350	chr12:26581021:-	ONLY_REF_SPLICE	YES	746	322	0.36	0.56	2.2639	1.014	{Klijn_CCL:Lung=1},FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	BEN_LUNG	0.36	0.56	3.2779	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	PTMA--PTMS	279	0	PTMA	6054	chr2:232576687:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.1931	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	BEN_LUNG	1	1	2.1931	TRUE	0	0	0	16	0	TRUE	ACH-000603
BEN_LUNG	PRSS3P1--KRT8	133	0	PRSS3P1	3295	chr7:142470637:+	KRT8	17295	chr12:53293794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0455	0	PRSS3P1->chr7:142468264-142471794:+,protease,_serine_3_pseudogene_1,KRT8->chr12:53290977-53343738:-,keratin_8	BEN_LUNG	1	1	1.0455	TRUE	1	0	0	3	0	TRUE	ACH-000603
BEN_LUNG	ITPR2--LRMP	115	53	ITPR2	39110	chr12:26709166:-	LRMP	77866	chr12:25205169:+	ONLY_REF_SPLICE	YES	353	0	0.32	1	0.904	0.4166	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	BEN_LUNG	0.32	1	1.3206	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	117	34	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	113	39	0.57	0.79	0.9197	0.2673	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.57	0.79	1.187	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-TA--MT-TC	90	12	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7075	0.0943	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BEN_LUNG	1	1	0.8018	FALSE	462	80	0	856	0	FALSE	ACH-000603
BEN_LUNG	HNRNPH1--C5orf60	89	9	HNRNPH1	6671	chr5:179047893:-	C5orf60	19554	chr5:179068879:-	ONLY_REF_SPLICE	YES	332	0	0.23	1	0.6996	0.0707	LOCAL_REARRANGEMENT:-:[6760],HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),C5orf60->chr5:179068545-179072047:-,chromosome_5_open_reading_frame_60	BEN_LUNG	0.23	1	0.7703	TRUE	0	0	0	2	0	TRUE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	87	14	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	24	0	0.81	1	0.6839	0.11	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.81	1	0.7939	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	CCDC91--FAM72D	84	18	CCDC91	20039	chr12:28515448:+	FAM72D	39019	chr1:143897641:-	ONLY_REF_SPLICE	YES	349	22	0.23	0.82	0.6603	0.1415	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,FAM72D->chr1:143896452-143913143:-,family_with_sequence_similarity_72_member_D	BEN_LUNG	0.23	0.82	0.8018	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	62	59	MT-ATP6	1249	chrM:8775:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	147	30	0.45	0.8	0.4874	0.4638	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.45	0.8	0.9512	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	40	135	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	5258	1	0.03	0.99	0.3144	1.0612	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.03	0.99	1.3756	FALSE	344	827	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	65	32	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	116	29	0.46	0.77	0.5109	0.2515	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.46	0.77	0.7624	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	62	36	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	113	30	0.46	0.77	0.4874	0.283	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.46	0.77	0.7704	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	11	230	MT-ND4	1180	chrM:10939:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	33	0	0.88	1	0.0865	1.8079	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.88	1	1.8944	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	ARNTL2--RP11-283G6.4	65	11	ARNTL2	6799	chr12:27533337:+	RP11-283G6.4	25180	chr12:26479409:-	ONLY_REF_SPLICE	YES	103	0	0.42	1	0.5109	0.0865	ARNTL2->aryl_hydrocarbon_receptor_nuclear_translocator_like_2,chr12:27485787-27576241:+,RP11-283G6.4->chr12:26364097-26488789:-	BEN_LUNG	0.42	1	0.5974	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	3	255	MT-ND4	1793	chrM:11552:+	MT-ND4L	5383	chrM:10474:+	INCL_NON_REF_SPLICE	YES	5621	0	0.04	1	0.0236	2.0045	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.04	1	2.0281	FALSE	344	827	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	62	15	MT-ATP6	1144	chrM:8670:+	MT-CO2	4926	chrM:7830:+	INCL_NON_REF_SPLICE	YES	116	120	0.4	0.39	0.4874	0.1179	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.39	0.4	0.6053	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	6	233	MT-ND4	1209	chrM:10968:+	MT-ND4L	5470	chrM:10561:+	INCL_NON_REF_SPLICE	YES	35	0	0.87	1	0.0472	1.8315	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.87	1	1.8787	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND6--MT-TE	63	5	MT-ND6	1051	chrM:14623:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4952	0.0393	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BEN_LUNG	1	1	0.5345	FALSE	499	1288	110	792	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	3	240	MT-ND4	1499	chrM:11258:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	320	0	0.43	1	0.0236	1.8866	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.43	1	1.9102	FALSE	344	827	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	3	239	MT-ND4	1498	chrM:11257:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	317	5	0.43	0.98	0.0236	1.8787	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.43	0.98	1.9023	FALSE	344	827	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	4	232	MT-ND4	1209	chrM:10968:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	35	3	0.87	0.99	0.0314	1.8237	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.87	0.99	1.8551	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	4	232	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	35	0	0.87	1	0.0314	1.8237	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.87	1	1.8551	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	3	232	MT-ND4	1285	chrM:11044:+	MT-ND4L	5529	chrM:10620:+	INCL_NON_REF_SPLICE	YES	40	2	0.85	0.99	0.0236	1.8237	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.85	0.99	1.8473	FALSE	344	827	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	4	227	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	NO	30	5	0.89	0.98	0.0314	1.7844	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.89	0.98	1.8158	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	TIMM23B--LINC00843	57	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4481	0.1179	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BEN_LUNG	1	1	0.566	TRUE	508	994	45	981	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	4	226	MT-ND4	1170	chrM:10929:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	YES	28	4	0.89	0.98	0.0314	1.7765	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.89	0.98	1.8079	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	16	178	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	14	5	0.93	0.97	0.1258	1.3992	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.93	0.97	1.525	FALSE	344	821	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	4	224	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	28	0	0.89	1	0.0314	1.7608	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.89	1	1.7922	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	5	220	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	16	2	0.93	0.99	0.0393	1.7293	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.93	0.99	1.7686	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	5	215	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	15	2	0.94	0.99	0.0393	1.69	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.94	0.99	1.7293	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	3	222	MT-ND4	1147	chrM:10906:+	MT-ND4L	5504	chrM:10595:+	INCL_NON_REF_SPLICE	YES	26	2	0.9	0.99	0.0236	1.7451	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.9	0.99	1.7687	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	4	217	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	24	2	0.9	0.99	0.0314	1.7058	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.9	0.99	1.7372	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	54	12	MT-ATP6	1207	chrM:8733:+	MT-CO2	5039	chrM:7943:+	INCL_NON_REF_SPLICE	YES	149	34	0.31	0.66	0.4245	0.0943	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.31	0.66	0.5188	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	4	200	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	14	2	0.94	0.99	0.0314	1.5721	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.94	0.99	1.6035	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	OR51S1--TP53I11	53	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4166	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	BEN_LUNG	1	1	0.4166	TRUE	402	216	10	229	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	50	0	MT-ATP6	1098	chrM:8624:+	MT-CO2	5182	chrM:8086:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.393	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	1	1	0.393	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	44	22	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	153	73	0.3	0.47	0.3459	0.1729	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.3	0.47	0.5188	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	RHOA--QRICH1	45	11	RHOA	6656	chr3:49405861:-	QRICH1	17997	chr3:49114471:-	ONLY_REF_SPLICE	YES	150	12	0.27	0.82	0.3537	0.0865	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,QRICH1->chr3:49067140-49131796:-,glutamine_rich_1	BEN_LUNG	0.27	0.82	0.4402	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	31	66	MT-ATP6	1291	chrM:8817:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	152	25	0.39	0.8	0.2437	0.5188	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.39	0.8	0.7625	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	KIF3B--RP4-553F4.6	45	1	KIF3B	1102	chr20:30865568:+	RP4-553F4.6	17049	chr20:32385801:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.3537	0.0079	KIF3B->chr20:30865467-30922814:+,kinesin_family_member_3B,RP4-553F4.6->chr20:32375179-32398903:-	BEN_LUNG	0.98	1	0.3616	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	3	162	MT-ND4	1984	chrM:11743:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	14792	1	0.01	0.99	0.0236	1.2734	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.01	0.99	1.297	FALSE	344	827	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	5	145	MT-ND4	1093	chrM:10852:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	14	1	0.91	0.99	0.0393	1.1398	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.91	0.99	1.1791	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	32	33	MT-ATP6	1516	chrM:9042:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	21	73	0.76	0.47	0.2515	0.2594	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.47	0.76	0.5109	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	RP11-123O10.4--GRIP1	38	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2987	0.0629	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BEN_LUNG	1	1	0.3616	FALSE	416	2512	207	587	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	35	17	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	5130	0	0.01	1	0.2751	0.1336	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.01	1	0.4087	FALSE	344	827	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	6	128	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	16	1	0.89	0.99	0.0472	1.0062	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.89	0.99	1.0534	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	ITPR2--LRMP	33	17	ITPR2	39110	chr12:26709166:-	LRMP	79588	chr12:25214526:+	ONLY_REF_SPLICE	YES	353	34	0.12	0.6	0.2594	0.1336	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	BEN_LUNG	0.12	0.6	0.393	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	5	127	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	35	1	0.79	0.99	0.0393	0.9983	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.79	0.99	1.0376	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	TIMM23--RP11-464F9.1	35	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	92	4	0.29	0.9	0.2751	0.0157	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BEN_LUNG	0.29	0.9	0.2908	TRUE	519	3926	326	965	0	FALSE	ACH-000603
BEN_LUNG	AP003900.6--AC008132.1	33	6	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.2594	0.0472	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	BEN_LUNG	0.97	1	0.3066	TRUE	1	1	0	28	1	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	17	67	MT-ATP6	1400	chrM:8926:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	119	30	0.41	0.74	0.1336	0.5267	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.41	0.74	0.6603	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	30	14	MT-ATP6	1200	chrM:8726:+	MT-CO2	5002	chrM:7906:+	INCL_NON_REF_SPLICE	YES	147	113	0.23	0.28	0.2358	0.11	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.23	0.28	0.3458	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	5	107	MT-ATP6	1575	chrM:9101:+	MT-CO2	4747	chrM:7651:+	INCL_NON_REF_SPLICE	YES	4	0	0.97	1	0.0393	0.8411	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.97	1	0.8804	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	23	35	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	12732	0	0	1	0.1808	0.2751	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0	1	0.4559	FALSE	328	800	43	304	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	8	95	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	24	1	0.81	0.99	0.0629	0.7468	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.81	0.99	0.8097	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	30	4	MT-ATP6	1108	chrM:8634:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	59	77	0.37	0.31	0.2358	0.0314	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.31	0.37	0.2672	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	22	33	MT-ATP6	1516	chrM:9042:+	MT-CO2	5002	chrM:7906:+	INCL_NON_REF_SPLICE	NO	21	113	0.72	0.33	0.1729	0.2594	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.33	0.72	0.4323	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	ITPR2--LRMP	21	27	ITPR2	39110	chr12:26709166:-	LRMP	78425	chr12:25205728:+	ONLY_REF_SPLICE	YES	353	16	0.12	0.75	0.1651	0.2122	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	BEN_LUNG	0.12	0.75	0.3773	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	17	38	MT-ATP6	1632	chrM:9158:+	MT-CO2	5002	chrM:7906:+	INCL_NON_REF_SPLICE	YES	0	113	1	0.33	0.1336	0.2987	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.33	1	0.4323	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	19	29	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	33	0	0.59	1	0.1494	0.228	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.59	1	0.3774	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	3	91	MT-ATP6	1516	chrM:9042:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	21	21	0.82	0.82	0.0236	0.7153	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.82	0.82	0.7389	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	4	87	MT-ATP6	1572	chrM:9098:+	MT-CO2	4843	chrM:7747:+	INCL_NON_REF_SPLICE	YES	5	36	0.95	0.72	0.0314	0.6839	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.72	0.95	0.7153	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	23	10	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	88	30	0.27	0.52	0.1808	0.0786	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.27	0.52	0.2594	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	CTD-2008L17.1--RP11-456O19.2	22	13	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	5	1	0.88	0.97	0.1729	0.1022	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	BEN_LUNG	0.88	0.97	0.2751	FALSE	20	187	4	79	0	FALSE	ACH-000603
BEN_LUNG	CTD-2008L17.1--RP11-456O19.2	24	5	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	5	3	0.85	0.91	0.1887	0.0393	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	BEN_LUNG	0.85	0.91	0.228	FALSE	33	240	4	98	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	21	17	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	7373	0	0.01	1	0.1651	0.1336	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.01	1	0.2987	FALSE	344	827	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	3	88	MT-ATP6	1491	chrM:9017:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	26	21	0.78	0.81	0.0236	0.6917	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.78	0.81	0.7153	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	3	85	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	10	0	0.9	1	0.0236	0.6682	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.9	1	0.6918	FALSE	344	821	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	3	83	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	7	0	0.92	1	0.0236	0.6524	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.92	1	0.676	FALSE	344	821	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND6--MT-TE	21	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1651	0.0629	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BEN_LUNG	1	1	0.228	FALSE	499	1288	110	792	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	14	33	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	456	0	0.09	1	0.11	0.2594	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.09	1	0.3694	FALSE	344	827	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	3	72	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	6	2	0.93	0.97	0.0236	0.566	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.93	0.97	0.5896	FALSE	344	821	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	3	71	MT-ATP6	1267	chrM:8793:+	MT-CO2	4815	chrM:7719:+	INCL_NON_REF_SPLICE	YES	155	19	0.32	0.8	0.0236	0.5581	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.32	0.8	0.5817	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	4	65	MT-ATP6	1223	chrM:8749:+	MT-CO2	4767	chrM:7671:+	INCL_NON_REF_SPLICE	YES	149	0	0.32	1	0.0314	0.5109	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.32	1	0.5423	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	C15orf57--CBX3	17	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	24	5	0.55	0.85	0.1336	0.0943	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BEN_LUNG	0.55	0.85	0.2279	TRUE	267	562	48	632	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	10	40	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	117	25	0.3	0.67	0.0786	0.3144	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.3	0.67	0.393	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	3	65	MT-ND4	1112	chrM:10871:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	16	0	0.81	1	0.0236	0.5109	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.81	1	0.5345	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-TA--MT-TC	16	12	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1258	0.0943	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BEN_LUNG	1	1	0.2201	FALSE	462	80	0	856	0	FALSE	ACH-000603
BEN_LUNG	CCDC91--RASSF8-AS1	16	10	CCDC91	24767	chr12:28605587:+	RASSF8-AS1	37817	chr12:26109697:-	ONLY_REF_SPLICE	YES	433	14	0.06	0.65	0.1258	0.0786	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,RASSF8-AS1->RASSF8_atnisense_RNA_1,chr12:26092262-26112698:-	BEN_LUNG	0.06	0.65	0.2044	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	SLC1A5--MT-ND4L	17	6	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	676	0	0.03	1	0.1336	0.0472	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.03	1	0.1808	FALSE	0	0	0	189	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	8	41	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	113	22	0.3	0.69	0.0629	0.3223	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.3	0.69	0.3852	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	16	9	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	59	21	0.3	0.54	0.1258	0.0707	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.3	0.54	0.1965	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	CXCL16--CYB561A3	18	0	CXCL16	5838	chr17:4637353:-	CYB561A3	13404	chr11:61125738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1415	0	GTEx&tcga_normals:19/3694=0.51%,GTEx:0.05%,CXCL16->C-X-C_motif_chemokine_ligand_16,chr17:4636821-4643217:-,CYB561A3->chr11:61116217-61129771:-,cytochrome_b561_family_member_A3	BEN_LUNG	1	1	0.1415	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	7	41	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	113	22	0.3	0.69	0.055	0.3223	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.3	0.69	0.3773	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	RP11-444D3.1--SOX5	17	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.95	0.1336	0.0079	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	BEN_LUNG	0.95	1	0.1415	TRUE	477	1352	189	275	0	FALSE	ACH-000603
BEN_LUNG	NIPA2--POLA1	17	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1336	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	BEN_LUNG	1	1	0.1336	TRUE	46	1352	75	139	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	13	15	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	28	0	0.5	1	0.1022	0.1179	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.5	1	0.2201	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	LINC01014--KCNMB2	16	1	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1258	0.0079	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	BEN_LUNG	1	1	0.1337	FALSE	11	60	26	37	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	12	17	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	252	0	0.1	1	0.0943	0.1336	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.1	1	0.2279	FALSE	344	827	44	306	0	FALSE	ACH-000603
BEN_LUNG	ITPR2--LRMP	12	12	ITPR2	39110	chr12:26709166:-	LRMP	80650	chr12:25215754:+	ONLY_REF_SPLICE	YES	353	37	0.06	0.39	0.0943	0.0943	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	BEN_LUNG	0.06	0.39	0.1886	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	6	36	MT-ATP6	1213	chrM:8739:+	MT-CO2	4898	chrM:7802:+	INCL_NON_REF_SPLICE	YES	149	101	0.22	0.29	0.0472	0.283	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.22	0.29	0.3302	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	6	34	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	4821	0	0.01	1	0.0472	0.2673	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.01	1	0.3145	FALSE	344	827	44	306	0	FALSE	ACH-000603
BEN_LUNG	SLC38A11--KCNH7	13	6	SLC38A11	8093	chr2:165793860:-	KCNH7	21057	chr2:163693277:-	ONLY_REF_SPLICE	YES	36	16	0.35	0.54	0.1022	0.0472	SLC38A11->chr2:165752696-165812035:-,solute_carrier_family_38_member_11,KCNH7->chr2:163227917-163695240:-,potassium_voltage-gated_channel_subfamily_H_member_7	BEN_LUNG	0.35	0.54	0.1494	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	7	29	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	39	0	0.48	1	0.055	0.228	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.48	1	0.283	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	RP11-141M1.3--STARD13	14	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.11	0.0079	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	BEN_LUNG	1	1	0.1179	FALSE	141	264	50	91	0	FALSE	ACH-000603
BEN_LUNG	FGFR1OP2--ITPR2	8	22	FGFR1OP2	3073	chr12:27107226:+	ITPR2	69526	chr12:26572146:-	ONLY_REF_SPLICE	YES	746	337	0.04	0.08	0.0629	0.1729	{Klijn_CCL:Lung=1},FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	BEN_LUNG	0.04	0.08	0.2358	TRUE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	9	17	MT-ATP6	1265	chrM:8791:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	154	33	0.14	0.44	0.0707	0.1336	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.14	0.44	0.2043	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-TA--MT-TC	13	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1022	0.0079	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BEN_LUNG	1	1	0.1101	FALSE	462	80	0	856	0	FALSE	ACH-000603
BEN_LUNG	AP000525.9--LA16c-60G3.6	13	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1022	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	BEN_LUNG	1	1	0.1022	TRUE	0	42	0	133	42	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	3	40	MT-ATP6	1193	chrM:8719:+	MT-CO2	4850	chrM:7754:+	INCL_NON_REF_SPLICE	YES	138	47	0.24	0.48	0.0236	0.3144	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.24	0.48	0.338	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	PTMA--PTMS	13	0	PTMA	6054	chr2:232576687:+	PTMS	13753	chr12:6879118:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1022	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	BEN_LUNG	1	1	0.1022	TRUE	0	0	0	16	0	TRUE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	3	39	MT-ATP6	1435	chrM:8961:+	MT-CO2	4967	chrM:7871:+	INCL_NON_REF_SPLICE	YES	34	124	0.55	0.25	0.0236	0.3066	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.25	0.55	0.3302	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	3	39	MT-ND4	1820	chrM:11579:+	MT-ND4L	5654	chrM:10745:+	INCL_NON_REF_SPLICE	YES	6972	0	0.01	1	0.0236	0.3066	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.01	1	0.3302	FALSE	344	827	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	4	34	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	8621	0	0	1	0.0314	0.2673	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0	1	0.2987	FALSE	344	827	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	5	30	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	3	1	0.92	0.97	0.0393	0.2358	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.92	0.97	0.2751	FALSE	344	821	44	306	0	FALSE	ACH-000603
BEN_LUNG	FRS2--TRHDE-AS1	11	5	FRS2	1182	chr12:69864310:+	TRHDE-AS1	27793	chr12:72658401:-	ONLY_REF_SPLICE	YES	49	0	0.25	1	0.0865	0.0393	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,TRHDE-AS1->TRHDE_antisense_RNA_1,chr12:72647288-72668687:-	BEN_LUNG	0.25	1	0.1258	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	5	28	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	14	0	0.7	1	0.0393	0.2201	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.7	1	0.2594	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	7	17	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	558	0	0.04	1	0.055	0.1336	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.04	1	0.1886	FALSE	344	827	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND6--MT-TE	6	20	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0.1572	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BEN_LUNG	1	1	0.2044	FALSE	499	1288	110	792	0	FALSE	ACH-000603
BEN_LUNG	TAF4--ZNF341	10	4	TAF4	2360	chr20:60639507:-	ZNF341	38834	chr20:32357890:+	ONLY_REF_SPLICE	YES	18	7	0.44	0.67	0.0786	0.0314	TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,ZNF341->chr20:32319463-32380075:+,zinc_finger_protein_341	BEN_LUNG	0.44	0.67	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	7	15	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	40	0	0.35	1	0.055	0.1179	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.35	1	0.1729	FALSE	344	827	44	306	0	FALSE	ACH-000603
BEN_LUNG	FGFR1OP2--ITPR2	10	2	FGFR1OP2	1328	chr12:27091643:+	ITPR2	71887	chr12:26564345:-	ONLY_REF_SPLICE	YES	627	498	0.02	0.02	0.0786	0.0157	{Klijn_CCL:Lung=1},FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	BEN_LUNG	0.02	0.02	0.0943	TRUE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	7	14	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	95	35	0.18	0.38	0.055	0.11	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.18	0.38	0.165	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	FGFR1OP2--ITPR2	4	25	FGFR1OP2	1328	chr12:27091643:+	ITPR2	17008	chr12:26943160:-	ONLY_REF_SPLICE	YES	627	281	0.04	0.09	0.0314	0.1965	{Klijn_CCL:Lung=1},FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	BEN_LUNG	0.04	0.09	0.2279	TRUE	0	0	0	2	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	3	28	MT-ATP6	1555	chrM:9081:+	MT-CO2	5048	chrM:7952:+	INCL_NON_REF_SPLICE	YES	11	33	0.74	0.48	0.0236	0.2201	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.48	0.74	0.2437	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ND6--MT-TE	5	19	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0.1494	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BEN_LUNG	1	1	0.1887	FALSE	499	1288	110	792	0	FALSE	ACH-000603
BEN_LUNG	HNRNPH1--C5orf60	7	10	HNRNPH1	6708	chr5:179047856:-	C5orf60	19308	chr5:179069125:-	INCL_NON_REF_SPLICE	YES	353	0	0.05	1	0.055	0.0786	LOCAL_REARRANGEMENT:-:[6760],HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),C5orf60->chr5:179068545-179072047:-,chromosome_5_open_reading_frame_60	BEN_LUNG	0.05	1	0.1336	TRUE	0	0	0	2	0	TRUE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	7	10	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	60	26	0.22	0.4	0.055	0.0786	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.22	0.4	0.1336	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	RP11-141M1.3--STARD13	9	2	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0707	0.0157	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	BEN_LUNG	1	1	0.0864	FALSE	49	120	16	70	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	7	9	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	59	22	0.21	0.42	0.055	0.0707	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.21	0.42	0.1257	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	FGFR1OP2--ITPR2	3	24	FGFR1OP2	1328	chr12:27091643:+	ITPR2	68350	chr12:26581021:-	ONLY_REF_SPLICE	YES	627	322	0.04	0.08	0.0236	0.1887	{Klijn_CCL:Lung=1},FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	BEN_LUNG	0.04	0.08	0.2123	TRUE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	8	4	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	86	37	0.12	0.24	0.0629	0.0314	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.12	0.24	0.0943	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	FTL--GPR56	8	3	FTL	2413	chr19:49469970:+	GPR56	20618	chr16:57681900:+	INCL_NON_REF_SPLICE	NO	2659	1069	0	0.01	0.0629	0.0236	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,GPR56->chr16:57644564-57698944:+	BEN_LUNG	0	0.01	0.0865	FALSE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	7	7	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.93	0.055	0.055	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.93	1	0.11	FALSE	344	821	44	306	0	FALSE	ACH-000603
BEN_LUNG	RP11-268G12.1--NR0B1	8	3	RP11-268G12.1	1247	chrX:27416868:-	NR0B1	17355	chrX:30322940:-	ONLY_REF_SPLICE	YES	6	198	0.65	0.05	0.0629	0.0236	RP11-268G12.1->chrX:27193037-27417114:-,NR0B1->chrX:30322323-30327715:-,nuclear_receptor_subfamily_0_group_B_member_1	BEN_LUNG	0.05	0.65	0.0865	TRUE	0	1	0	3	1	TRUE	ACH-000603
BEN_LUNG	SLC1A5--MT-ND4L	7	7	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	654	0	0.02	1	0.055	0.055	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.02	1	0.11	FALSE	0	0	0	189	0	FALSE	ACH-000603
BEN_LUNG	LINC01014--KCNMB2	8	2	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0629	0.0157	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	BEN_LUNG	1	1	0.0786	FALSE	12	33	18	33	0	FALSE	ACH-000603
BEN_LUNG	PVT1--MYC	8	2	PVT1	1202	chr8:128806980:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	47	98	0.18	0.09	0.0629	0.0157	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	BEN_LUNG	0.09	0.18	0.0786	TRUE	3	14	0	24	0	FALSE	ACH-000603
BEN_LUNG	PVT1--MYC	8	2	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	47	101	0.18	0.09	0.0629	0.0157	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	BEN_LUNG	0.09	0.18	0.0786	TRUE	3	14	0	24	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	5	12	MT-ATP6	1123	chrM:8649:+	MT-CO2	4811	chrM:7715:+	INCL_NON_REF_SPLICE	YES	88	14	0.16	0.55	0.0393	0.0943	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.16	0.55	0.1336	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ND6--MT-TE	4	16	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0.1258	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BEN_LUNG	1	1	0.1572	FALSE	499	1288	110	792	0	FALSE	ACH-000603
BEN_LUNG	RAD18--AC091493.2	8	0	RAD18	10780	chr3:8953996:-	AC091493.2	25167	chr3:16733879:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0629	0	RAD18->RAD18,_E3_ubiquitin_protein_ligase,chr3:8817088-9005457:-,AC091493.2->chr3:16729493-16738986:-	BEN_LUNG	1	1	0.0629	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	C22orf29--TXNRD2	7	3	C22orf29	1454	chr22:19841966:-	TXNRD2	16161	chr22:19907122:-	ONLY_REF_SPLICE	YES	16	10	0.38	0.5	0.055	0.0236	LOCAL_REARRANGEMENT:-:[20621],C22orf29->chr22:19833661-19842419:-,chromosome_22_open_reading_frame_29,TXNRD2->chr22:19863040-19929341:-,thioredoxin_reductase_2	BEN_LUNG	0.38	0.5	0.0786	TRUE	0	1	0	1	0	TRUE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	4	15	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	36	0	0.35	1	0.0314	0.1179	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.35	1	0.1493	FALSE	344	827	44	306	0	FALSE	ACH-000603
BEN_LUNG	BCAT1--SOX5	7	2	BCAT1	1533	chr12:25101861:-	SOX5	32353	chr12:24048958:-	ONLY_REF_SPLICE	YES	488	1	0.02	0.9	0.055	0.0157	BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	BEN_LUNG	0.02	0.9	0.0707	TRUE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	C15orf57--CBX3	6	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	21	8	0.36	0.6	0.0472	0.0472	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BEN_LUNG	0.36	0.6	0.0944	TRUE	267	562	48	632	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	5	10	MT-ATP6	1117	chrM:8643:+	MT-CO2	4827	chrM:7731:+	INCL_NON_REF_SPLICE	YES	60	28	0.2	0.35	0.0393	0.0786	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.2	0.35	0.1179	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	3	18	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	13812	0	0	1	0.0236	0.1415	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0	1	0.1651	FALSE	343	822	44	305	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	3	18	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	33	0	0.39	1	0.0236	0.1415	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.39	1	0.1651	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	4	14	MT-ND4	1152	chrM:10911:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	28	0	0.39	1	0.0314	0.11	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.39	1	0.1414	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	AP003900.6--AC008132.1	7	1	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.055	0.0079	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	BEN_LUNG	1	1	0.0629	TRUE	0	0	0	25	0	FALSE	ACH-000603
BEN_LUNG	CCDC91--RASSF8-AS1	5	9	CCDC91	24767	chr12:28605587:+	RASSF8-AS1	37820	chr12:26109694:-	ONLY_REF_SPLICE	YES	433	13	0.03	0.52	0.0393	0.0707	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,RASSF8-AS1->RASSF8_atnisense_RNA_1,chr12:26092262-26112698:-	BEN_LUNG	0.03	0.52	0.11	TRUE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	FGFR1OP2--ITPR2	1	25	FGFR1OP2	1328	chr12:27091643:+	ITPR2	44345	chr12:26755639:-	ONLY_REF_SPLICE	YES	627	358	0.04	0.07	0.0079	0.1965	{Klijn_CCL:Lung=1},FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	BEN_LUNG	0.04	0.07	0.2044	TRUE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	7	1	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	39	0	0.17	1	0.055	0.0079	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.17	1	0.0629	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	7	1	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	39	0	0.17	1	0.055	0.0079	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.17	1	0.0629	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	RP11-123O10.4--GRIP1	6	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0472	0.0393	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BEN_LUNG	1	1	0.0865	FALSE	93	270	15	244	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	7	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	1	1	0.055	FALSE	344	821	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	7	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	1	1	0.055	FALSE	344	821	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	6	3	MT-ATP6	1123	chrM:8649:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	88	33	0.09	0.21	0.0472	0.0236	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.09	0.21	0.0708	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-TA--MT-TC	5	7	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0.055	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BEN_LUNG	1	1	0.0943	FALSE	462	80	0	856	0	FALSE	ACH-000603
BEN_LUNG	CLEC16A--TM7SF3	6	2	CLEC16A	11984	chr16:11097162:+	TM7SF3	44851	chr12:27156323:-	ONLY_REF_SPLICE	YES	20	1022	0.29	0.01	0.0472	0.0157	{Klijn_CCL:Lung=1},CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,TM7SF3->chr12:27126128-27167367:-,transmembrane_7_superfamily_member_3	BEN_LUNG	0.01	0.29	0.0629	FALSE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	4	10	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	84	29	0.14	0.33	0.0314	0.0786	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.14	0.33	0.11	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	3	14	MT-ATP6	1124	chrM:8650:+	MT-CO2	4767	chrM:7671:+	INCL_NON_REF_SPLICE	YES	87	0	0.16	1	0.0236	0.11	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.16	1	0.1336	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	3	14	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	35	0	0.33	1	0.0236	0.11	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.33	1	0.1336	FALSE	344	826	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-TA--MT-TC	3	14	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0.11	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BEN_LUNG	1	1	0.1336	FALSE	462	80	0	856	0	FALSE	ACH-000603
BEN_LUNG	CPSF6--NR0B1	6	1	CPSF6	11046	chr12:69656342:+	NR0B1	23329	chrX:30322940:-	ONLY_REF_SPLICE	YES	121	198	0.05	0.03	0.0472	0.0079	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,NR0B1->chrX:30322323-30327715:-,nuclear_receptor_subfamily_0_group_B_member_1	BEN_LUNG	0.03	0.05	0.0551	TRUE	0	1	0	8	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	6	1	MT-ATP6	1072	chrM:8598:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	37	33	0.16	0.17	0.0472	0.0079	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.16	0.17	0.0551	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	3	13	MT-ATP6	1169	chrM:8695:+	MT-CO2	4981	chrM:7885:+	INCL_NON_REF_SPLICE	YES	121	125	0.12	0.11	0.0236	0.1022	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.11	0.12	0.1258	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ND6--MT-TE	5	5	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0.0393	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BEN_LUNG	1	1	0.0786	FALSE	499	1288	110	792	0	FALSE	ACH-000603
BEN_LUNG	SLC38A11--KCNH7	6	1	SLC38A11	8093	chr2:165793860:-	KCNH7	22288	chr2:163393590:-	ONLY_REF_SPLICE	YES	36	15	0.16	0.32	0.0472	0.0079	SLC38A11->chr2:165752696-165812035:-,solute_carrier_family_38_member_11,KCNH7->chr2:163227917-163695240:-,potassium_voltage-gated_channel_subfamily_H_member_7	BEN_LUNG	0.16	0.32	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	6	0	MT-ND4	1059	chrM:10818:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	1	1	0.0472	FALSE	344	821	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BEN_LUNG	1	1	0.0472	FALSE	499	1288	110	792	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	3	11	MT-ND4	1004	chrM:10763:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0.0865	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	1	1	0.1101	FALSE	344	821	44	306	0	FALSE	ACH-000603
BEN_LUNG	FRS2--TRHDE-AS1	4	5	FRS2	3339	chr12:69880077:+	TRHDE-AS1	27793	chr12:72658401:-	ONLY_REF_SPLICE	YES	53	0	0.15	1	0.0314	0.0393	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,TRHDE-AS1->TRHDE_antisense_RNA_1,chr12:72647288-72668687:-	BEN_LUNG	0.15	1	0.0707	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	MT-ND6--MT-TE	4	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0.0393	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BEN_LUNG	1	1	0.0707	FALSE	499	1288	110	792	0	FALSE	ACH-000603
BEN_LUNG	PGS1--RP11-806H10.4	5	1	PGS1	11842	chr17:76411108:+	RP11-806H10.4	26314	chr17:76369856:+	ONLY_REF_SPLICE	YES	79	0	0.07	1	0.0393	0.0079	LOCAL_REARRANGEMENT:+:[4729],PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1,RP11-806H10.4->chr17:76356534-76369992:+	BEN_LUNG	0.07	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	4	4	MT-ATP6	1089	chrM:8615:+	MT-CO2	4955	chrM:7859:+	INCL_NON_REF_SPLICE	YES	50	125	0.14	0.06	0.0314	0.0314	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.06	0.14	0.0628	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	4	4	MT-ATP6	1118	chrM:8644:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	61	77	0.12	0.09	0.0314	0.0314	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.09	0.12	0.0628	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	1	1	0.0393	FALSE	344	821	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BEN_LUNG	1	1	0.0393	FALSE	499	1288	110	792	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	3	7	MT-ATP6	1108	chrM:8634:+	MT-CO2	4904	chrM:7808:+	INCL_NON_REF_SPLICE	YES	59	110	0.14	0.08	0.0236	0.055	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.08	0.14	0.0786	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	RHOA--QRICH1	3	7	RHOA	4432	chr3:49412867:-	QRICH1	17997	chr3:49114471:-	ONLY_REF_SPLICE	YES	178	12	0.05	0.45	0.0236	0.055	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,QRICH1->chr3:49067140-49131796:-,glutamine_rich_1	BEN_LUNG	0.05	0.45	0.0786	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	FRS2--TRHDE-AS1	4	2	FRS2	1182	chr12:69864310:+	TRHDE-AS1	33334	chr12:72649554:-	ONLY_REF_SPLICE	YES	49	0	0.11	1	0.0314	0.0157	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,TRHDE-AS1->TRHDE_antisense_RNA_1,chr12:72647288-72668687:-	BEN_LUNG	0.11	1	0.0471	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	JUP--MT-CO3	3	6	JUP	15343	chr17:39911680:-	MT-CO3	23824	chrM:9270:+	INCL_NON_REF_SPLICE	NO	213	0	0.04	1	0.0236	0.0472	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BEN_LUNG	0.04	1	0.0708	FALSE	0	0	0	2	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	3	6	MT-ATP6	1142	chrM:8668:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	115	37	0.07	0.2	0.0236	0.0472	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.07	0.2	0.0708	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	MT-ATP6--MT-CO2	4	2	MT-ATP6	1072	chrM:8598:+	MT-CO2	4716	chrM:7620:+	INCL_NON_REF_SPLICE	YES	37	0	0.14	1	0.0314	0.0157	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BEN_LUNG	0.14	1	0.0471	FALSE	59	21	0	114	0	FALSE	ACH-000603
BEN_LUNG	CASC9--RP11-300E4.2	4	1	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	15	0	0.25	1	0.0314	0.0079	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	BEN_LUNG	0.25	1	0.0393	TRUE	0	23	0	19	23	TRUE	ACH-000603
BEN_LUNG	CTD-2008L17.1--RP11-456O19.2	1	13	CTD-2008L17.1	3828	chr18:53685010:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.0079	0.1022	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	BEN_LUNG	0.93	1	0.1101	FALSE	1	24	0	14	0	FALSE	ACH-000603
BEN_LUNG	JUP--MT-CO3	4	1	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	277	15613	0.02	0	0.0314	0.0079	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BEN_LUNG	0	0.02	0.0393	FALSE	0	0	0	33	0	FALSE	ACH-000603
BEN_LUNG	LAMA5--AGPAT3	4	1	LAMA5	30136	chr20:60893899:-	AGPAT3	67718	chr21:45400870:+	ONLY_REF_SPLICE	YES	67	54	0.07	0.08	0.0314	0.0079	{Klijn_CCL:Lung=1},LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5,AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+	BEN_LUNG	0.07	0.08	0.0393	TRUE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	MT-ND6--MT-TE	4	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0.0079	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BEN_LUNG	1	1	0.0393	FALSE	499	1288	110	792	0	FALSE	ACH-000603
BEN_LUNG	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0314	0.0079	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BEN_LUNG	0.83	1	0.0393	FALSE	292	1546	117	613	0	FALSE	ACH-000603
BEN_LUNG	RP11-444D3.1--SOX5	4	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0314	0.0079	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	BEN_LUNG	0.83	1	0.0393	TRUE	274	363	69	150	0	FALSE	ACH-000603
BEN_LUNG	RP4-553F4.6--TTLL9	4	1	RP4-553F4.6	3239	chr20:32383320:-	TTLL9	22034	chr20:30525199:+	ONLY_REF_SPLICE	YES	20	1	0.2	0.83	0.0314	0.0079	RP4-553F4.6->chr20:32375179-32398903:-,TTLL9->chr20:30458505-30532764:+,tubulin_tyrosine_ligase_like_9	BEN_LUNG	0.2	0.83	0.0393	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	CKAP5--SHB	4	0	CKAP5	15635	chr11:46817144:-	SHB	53247	chr9:37920001:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5,SHB->SH2_domain_containing_adaptor_protein_B,chr9:37919131-38069210:-	BEN_LUNG	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	FGFR1OP2--ITPR2	4	0	FGFR1OP2	1328	chr12:27091643:+	ITPR2	73087	chr12:26553191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	{Klijn_CCL:Lung=1},FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	BEN_LUNG	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	FTL--GPR56	4	0	FTL	1162	chr19:49468719:+	GPR56	32497	chr16:57695828:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,GPR56->chr16:57644564-57698944:+	BEN_LUNG	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	1	1	0.0314	FALSE	344	821	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BEN_LUNG	1	1	0.0314	FALSE	499	1288	110	792	0	FALSE	ACH-000603
BEN_LUNG	DPY19L3--C18orf25	3	2	DPY19L3	21714	chr19:32968560:+	C18orf25	35958	chr18:43833663:+	ONLY_REF_SPLICE	YES	18	65	0.22	0.07	0.0236	0.0157	DPY19L3->chr19:32896449-32976801:+,dpy-19_like_3_(C._elegans),C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25	BEN_LUNG	0.07	0.22	0.0393	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	LAMA5--AGPAT3	3	2	LAMA5	30525	chr20:60893510:-	AGPAT3	67718	chr21:45400870:+	ONLY_REF_SPLICE	YES	59	54	0.08	0.08	0.0236	0.0157	{Klijn_CCL:Lung=1},LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5,AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+	BEN_LUNG	0.08	0.08	0.0393	TRUE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	METTL15--RP11-115J23.1	3	2	METTL15	3728	chr11:28135151:+	RP11-115J23.1	23893	chr11:29059289:+	ONLY_REF_SPLICE	YES	13	0	0.28	1	0.0236	0.0157	METTL15->chr11:28129795-28355054:+,methyltransferase_like_15,RP11-115J23.1->chr11:28724162-29085368:+	BEN_LUNG	0.28	1	0.0393	TRUE	0	0	0	2	0	TRUE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	3	2	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	42	0	0.11	1	0.0236	0.0157	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.11	1	0.0393	FALSE	344	827	44	306	0	FALSE	ACH-000603
BEN_LUNG	AGPAT3--LAMA5	3	1	AGPAT3	24892	chr21:45401068:+	LAMA5	70909	chr20:60885367:-	ONLY_REF_SPLICE	YES	75	69	0.05	0.05	0.0236	0.0079	AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+,LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5	BEN_LUNG	0.05	0.05	0.0315	TRUE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	MT-ND4--MT-ND4L	3	1	MT-ND4	1015	chrM:10774:+	MT-ND4L	5613	chrM:10704:+	INCL_NON_REF_SPLICE	YES	3	1	0.57	0.8	0.0236	0.0079	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	0.57	0.8	0.0315	FALSE	344	821	44	306	0	FALSE	ACH-000603
BEN_LUNG	MT-TA--MT-TC	3	1	MT-TA	1021	chrM:5635:-	MT-TC	4012	chrM:5884:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0.0079	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BEN_LUNG	1	1	0.0315	FALSE	462	80	0	856	0	FALSE	ACH-000603
BEN_LUNG	NOC4L--GALNT9	3	1	NOC4L	2218	chr12:132630210:+	GALNT9	24488	chr12:132688235:-	ONLY_REF_SPLICE	YES	34	90	0.11	0.04	0.0236	0.0079	GTEx_v2:{count=4;pct=0.05%;dist=Brain_-_Cerebellum=2,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_INVERSION:+:-:[43911],NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,GALNT9->chr12:132680924-132905935:-,polypeptide_N-acetylgalactosaminyltransferase_9	BEN_LUNG	0.04	0.11	0.0315	TRUE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	NRIP1--AF127936.7	3	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.27	1	0.0236	0.0079	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BEN_LUNG	0.27	1	0.0315	FALSE	125	705	46	456	0	FALSE	ACH-000603
BEN_LUNG	RNF152--RP11-879F14.1	3	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0236	0.0079	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	BEN_LUNG	0.44	1	0.0315	FALSE	275	472	65	43	0	FALSE	ACH-000603
BEN_LUNG	ACTR3C--RP11-728K20.1	3	0	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	BEN_LUNG	1	1	0.0236	TRUE	0	5	0	16	1	FALSE	ACH-000603
BEN_LUNG	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	5082	chr22:16186811:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	BEN_LUNG	1	1	0.0236	TRUE	0	3	0	6	3	TRUE	ACH-000603
BEN_LUNG	APP--MT-ND2	3	0	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	BEN_LUNG	1	1	0.0236	FALSE	0	1	0	51	0	FALSE	ACH-000603
BEN_LUNG	CXCL16--CYB561A3	3	0	CXCL16	5839	chr17:4637352:-	CYB561A3	13404	chr11:61125738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx&tcga_normals:19/3694=0.51%,GTEx:0.05%,CXCL16->C-X-C_motif_chemokine_ligand_16,chr17:4636821-4643217:-,CYB561A3->chr11:61116217-61129771:-,cytochrome_b561_family_member_A3	BEN_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	FGF14--SYK	2	4	FGF14	1304	chr13:103053821:-	SYK	15794	chr9:93606140:+	ONLY_REF_SPLICE	YES	5	6	0.55	0.5	0.0157	0.0314	FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14,SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase	BEN_LUNG	0.5	0.55	0.0471	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	FGFR1OP2--ITPR2	2	4	FGFR1OP2	1328	chr12:27091643:+	ITPR2	69526	chr12:26572146:-	ONLY_REF_SPLICE	YES	627	337	0.01	0.02	0.0157	0.0314	{Klijn_CCL:Lung=1},FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	BEN_LUNG	0.01	0.02	0.0471	FALSE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BEN_LUNG	1	1	0.0236	FALSE	499	1288	110	792	0	FALSE	ACH-000603
BEN_LUNG	PPFIBP1--MRPS35	3	0	PPFIBP1	1935	chr12:27677298:+	MRPS35	50704	chr12:27908114:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEIGHBORS[15209],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,MRPS35->chr12:27863706-27909228:+,mitochondrial_ribosomal_protein_S35	BEN_LUNG	1	1	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	RP11-1L12.3--SLC5A12	2	4	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0157	0.0314	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	BEN_LUNG	0.75	1	0.0471	TRUE	3	101	0	60	0	FALSE	ACH-000603
BEN_LUNG	SLC1A5--MT-ND4L	3	0	SLC1A5	6502	chr19:47281996:-	MT-ND4L	13013	chrM:10620:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BEN_LUNG	1	1	0.0236	FALSE	0	0	0	189	0	FALSE	ACH-000603
BEN_LUNG	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.21	1	0.0157	0.0157	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BEN_LUNG	0.21	1	0.0314	FALSE	164	806	69	479	0	FALSE	ACH-000603
BEN_LUNG	PVT1--MYC	2	2	PVT1	2457	chr8:128808254:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	52	101	0.07	0.04	0.0157	0.0157	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	BEN_LUNG	0.04	0.07	0.0314	TRUE	0	6	0	6	0	FALSE	ACH-000603
BEN_LUNG	VWDE--PHF14	2	2	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	11	55	0.27	0.07	0.0157	0.0157	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	BEN_LUNG	0.07	0.27	0.0314	TRUE	0	6	0	17	2	TRUE	ACH-000603
BEN_LUNG	CBFA2T3--DBNDD1	2	1	CBFA2T3	6570	chr16:88967912:-	DBNDD1	25783	chr16:90075838:-	ONLY_REF_SPLICE	YES	13	14	0.19	0.18	0.0157	0.0079	CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,DBNDD1->chr16:90071273-90086536:-,dysbindin_(dystrobrevin_binding_protein_1)_domain_containing_1	BEN_LUNG	0.18	0.19	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	CCDC91--RASSF8-AS1	2	1	CCDC91	24767	chr12:28605587:+	RASSF8-AS1	45629	chr12:26092439:-	ONLY_REF_SPLICE	YES	433	5	0.01	0.38	0.0157	0.0079	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,RASSF8-AS1->RASSF8_atnisense_RNA_1,chr12:26092262-26112698:-	BEN_LUNG	0.01	0.38	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	DPP10--AC066593.1	2	1	DPP10	13435	chr2:116066929:+	AC066593.1	46805	chr2:115902604:-	ONLY_REF_SPLICE	NO	351	289	0.01	0.01	0.0157	0.0079	NEIGHBORS_OVERLAP:+:-:[30408],DPP10->chr2:115199876-116603328:+,dipeptidyl_peptidase_like_10,AC066593.1->chr2:115888512-115918920:-	BEN_LUNG	0.01	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	DPP10--AC066593.1	2	1	DPP10	11136	chr2:115919849:+	AC066593.1	46805	chr2:115902604:-	ONLY_REF_SPLICE	YES	43	289	0.07	0.01	0.0157	0.0079	NEIGHBORS_OVERLAP:+:-:[30408],DPP10->chr2:115199876-116603328:+,dipeptidyl_peptidase_like_10,AC066593.1->chr2:115888512-115918920:-	BEN_LUNG	0.01	0.07	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	ITPR2--RP11-625L16.1	1	5	ITPR2	12394	chr12:26839414:-	RP11-625L16.1	72394	chr12:24926905:+	ONLY_REF_SPLICE	YES	240	85	0.02	0.07	0.0079	0.0393	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,RP11-625L16.1->chr12:24857499-24927147:+	BEN_LUNG	0.02	0.07	0.0472	TRUE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	RP4-553F4.6--TTLL9	2	1	RP4-553F4.6	3239	chr20:32383320:-	TTLL9	20837	chr20:30522495:+	ONLY_REF_SPLICE	YES	20	0	0.13	1	0.0157	0.0079	RP4-553F4.6->chr20:32375179-32398903:-,TTLL9->chr20:30458505-30532764:+,tubulin_tyrosine_ligase_like_9	BEN_LUNG	0.13	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	VTI1A--RP11-57H14.3	2	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	19	0	0.14	1	0.0157	0.0079	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	BEN_LUNG	0.14	1	0.0236	FALSE	272	151	14	158	0	FALSE	ACH-000603
BEN_LUNG	ACTR3C--RP11-728K20.1	2	0	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	19906	chr7:149588390:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	BEN_LUNG	1	1	0.0157	TRUE	3	46	4	12	0	FALSE	ACH-000603
BEN_LUNG	AP003900.6--TPTE	2	0	AP003900.6	1122	chr21:11169841:+	TPTE	19477	chr21:10987877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	AP003900.6->chr21:11169720-11184046:+,TPTE->chr21:10906201-11029719:-,transmembrane_phosphatase_with_tensin_homology	BEN_LUNG	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	APP--LIPI	2	0	APP	5253	chr21:27484296:-	LIPI	43577	chr21:15481401:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,LIPI->chr21:15481134-15583166:-,lipase_I	BEN_LUNG	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	CCDC91--FAM72D	1	4	CCDC91	18961	chr12:28460682:+	FAM72D	39019	chr1:143897641:-	ONLY_REF_SPLICE	YES	342	22	0.01	0.19	0.0079	0.0314	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,FAM72D->chr1:143896452-143913143:-,family_with_sequence_similarity_72_member_D	BEN_LUNG	0.01	0.19	0.0393	FALSE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	CCDC91--FAM72D	2	0	CCDC91	12544	chr12:28412375:+	FAM72D	39019	chr1:143897641:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,FAM72D->chr1:143896452-143913143:-,family_with_sequence_similarity_72_member_D	BEN_LUNG	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	CCDC91--MRPS35	2	0	CCDC91	5569	chr12:28343574:+	MRPS35	43680	chr12:27908114:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,MRPS35->chr12:27863706-27909228:+,mitochondrial_ribosomal_protein_S35	BEN_LUNG	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	CLEC16A--TM7SF3	2	0	CLEC16A	11984	chr16:11097162:+	TM7SF3	46152	chr12:27152581:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	{Klijn_CCL:Lung=1},CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,TM7SF3->chr12:27126128-27167367:-,transmembrane_7_superfamily_member_3	BEN_LUNG	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	FGFR1OP2--ITPR2	1	4	FGFR1OP2	3073	chr12:27107226:+	ITPR2	71887	chr12:26564345:-	ONLY_REF_SPLICE	YES	746	498	0.01	0.01	0.0079	0.0314	{Klijn_CCL:Lung=1},FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	BEN_LUNG	0.01	0.01	0.0393	FALSE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	FGFR1OP2--TM7SF3	1	4	FGFR1OP2	1328	chr12:27091643:+	TM7SF3	18176	chr12:27156323:-	ONLY_REF_SPLICE	NO	627	1022	0.01	0	0.0079	0.0314	LOCAL_INVERSION:+:-:[6545],FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,TM7SF3->chr12:27126128-27167367:-,transmembrane_7_superfamily_member_3	BEN_LUNG	0	0.01	0.0393	FALSE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	GDAP1--RP11-758M4.1	2	0	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	BEN_LUNG	1	1	0.0157	TRUE	7	28	0	43	0	FALSE	ACH-000603
BEN_LUNG	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BEN_LUNG	1	1	0.0157	FALSE	7	44	2	41	0	FALSE	ACH-000603
BEN_LUNG	NSD1--UBE2D2	2	0	NSD1	4006	chr5:176563031:+	UBE2D2	48237	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	BEN_LUNG	1	1	0.0157	TRUE	0	1	0	1	1	TRUE	ACH-000603
BEN_LUNG	PPFIBP1--MRPS35	2	0	PPFIBP1	4200	chr12:27731172:+	MRPS35	48524	chr12:27888380:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	NEIGHBORS[15209],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,MRPS35->chr12:27863706-27909228:+,mitochondrial_ribosomal_protein_S35	BEN_LUNG	1	1	0.0157	FALSE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	PPP1R12A--PAWR	2	0	PPP1R12A	1766	chr12:80328475:-	PAWR	45995	chr12:80014987:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[82466],PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator	BEN_LUNG	1	1	0.0157	FALSE	0	1	0	2	0	FALSE	ACH-000603
BEN_LUNG	SYNE2--ENC1	2	0	SYNE2	4981	chr14:64375945:+	ENC1	147132	chr5:73925817:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	SYNE2->Oncogene{Bushman},chr14:64319683-64693165:+,spectrin_repeat_containing_nuclear_envelope_protein_2,ENC1->Oncogene{Bushman},chr5:73923234-73937249:-,ectodermal-neural_cortex_1	BEN_LUNG	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	TMTC2--KRAS	2	0	TMTC2	1790	chr12:83081448:+	KRAS	28949	chr12:25380346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	TMTC2->chr12:83080659-83528649:+,transmembrane_and_tetratricopeptide_repeat_containing_2,KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-	BEN_LUNG	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	FRS2--TRHDE-AS1	1	2	FRS2	4453	chr12:69885431:+	TRHDE-AS1	33334	chr12:72649554:-	ONLY_REF_SPLICE	YES	52	0	0.05	1	0.0079	0.0157	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,TRHDE-AS1->TRHDE_antisense_RNA_1,chr12:72647288-72668687:-	BEN_LUNG	0.05	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	AP003900.6--TPTE	1	1	AP003900.6	3299	chr21:11174002:+	TPTE	26800	chr21:10952963:-	ONLY_REF_SPLICE	YES	1	69	0.67	0.03	0.0079	0.0079	AP003900.6->chr21:11169720-11184046:+,TPTE->chr21:10906201-11029719:-,transmembrane_phosphatase_with_tensin_homology	BEN_LUNG	0.03	0.67	0.0158	TRUE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	APP--LIPI	1	1	APP	5253	chr21:27484296:-	LIPI	42400	chr21:15517120:-	ONLY_REF_SPLICE	NO	381	0	0.01	1	0.0079	0.0079	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,LIPI->chr21:15481134-15583166:-,lipase_I	BEN_LUNG	0.01	1	0.0158	FALSE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	BCAT1--FGFR1OP2	1	1	BCAT1	1533	chr12:25101861:-	FGFR1OP2	29211	chr12:27107078:+	ONLY_REF_SPLICE	NO	488	705	0	0	0.0079	0.0079	BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-,FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+	BEN_LUNG	0	0	0.0158	FALSE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	CCDC91--MRPS35	1	1	CCDC91	18961	chr12:28460682:+	MRPS35	43680	chr12:27908114:+	ONLY_REF_SPLICE	YES	342	2360	0.01	0	0.0079	0.0079	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,MRPS35->chr12:27863706-27909228:+,mitochondrial_ribosomal_protein_S35	BEN_LUNG	0	0.01	0.0158	FALSE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	CCDC91--MRPS35	1	1	CCDC91	12544	chr12:28412375:+	MRPS35	43680	chr12:27908114:+	ONLY_REF_SPLICE	YES	469	2360	0	0	0.0079	0.0079	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,MRPS35->chr12:27863706-27909228:+,mitochondrial_ribosomal_protein_S35	BEN_LUNG	0	0	0.0158	FALSE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	CLEC16A--TM7SF3	1	1	CLEC16A	11936	chr16:11097114:+	TM7SF3	44851	chr12:27156323:-	ONLY_REF_SPLICE	YES	16	1022	0.11	0	0.0079	0.0079	{Klijn_CCL:Lung=1},CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,TM7SF3->chr12:27126128-27167367:-,transmembrane_7_superfamily_member_3	BEN_LUNG	0	0.11	0.0158	FALSE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	FGF14--SYK	1	1	FGF14	1304	chr13:103053821:-	SYK	17252	chr9:93607716:+	ONLY_REF_SPLICE	YES	5	13	0.29	0.13	0.0079	0.0079	FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14,SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase	BEN_LUNG	0.13	0.29	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	FGF14-IT1--FGF14	1	1	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	6	1	0.25	0.0079	0.0079	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	BEN_LUNG	0.25	1	0.0158	TRUE	71	201	23	28	0	FALSE	ACH-000603
BEN_LUNG	FGFR1OP2--TM7SF3	1	1	FGFR1OP2	1328	chr12:27091643:+	TM7SF3	30765	chr12:27127160:-	ONLY_REF_SPLICE	YES	627	2698	0	0	0.0079	0.0079	LOCAL_INVERSION:+:-:[6545],FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,TM7SF3->chr12:27126128-27167367:-,transmembrane_7_superfamily_member_3	BEN_LUNG	0	0	0.0158	FALSE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	GMDS-AS1--GMDS	1	1	GMDS-AS1	2273	chr6:2249160:+	GMDS	34514	chr6:2124965:-	ONLY_REF_SPLICE	YES	20	62	0.09	0.03	0.0079	0.0079	GTEx_FI:{Salivary_Gland=[count:2=pct:5.1],Thyroid=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},LOCAL_INVERSION:+:-:[56],GMDS-AS1->GMDS_antisense_RNA_1_(head_to_head),chr6:2245982-2482256:+,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	BEN_LUNG	0.03	0.09	0.0158	TRUE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	NOC4L--GALNT9	1	1	NOC4L	2218	chr12:132630210:+	GALNT9	16341	chr12:132839211:-	ONLY_REF_SPLICE	YES	34	89	0.06	0.02	0.0079	0.0079	GTEx_v2:{count=4;pct=0.05%;dist=Brain_-_Cerebellum=2,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_INVERSION:+:-:[43911],NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,GALNT9->chr12:132680924-132905935:-,polypeptide_N-acetylgalactosaminyltransferase_9	BEN_LUNG	0.02	0.06	0.0158	TRUE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	NOC4L--GALNT9	1	1	NOC4L	5448	chr12:132633440:+	GALNT9	16341	chr12:132839211:-	ONLY_REF_SPLICE	YES	27	89	0.07	0.02	0.0079	0.0079	GTEx_v2:{count=4;pct=0.05%;dist=Brain_-_Cerebellum=2,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_INVERSION:+:-:[43911],NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,GALNT9->chr12:132680924-132905935:-,polypeptide_N-acetylgalactosaminyltransferase_9	BEN_LUNG	0.02	0.07	0.0158	TRUE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	RNF152--RP11-879F14.1	1	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	NO	5	0	0.29	1	0.0079	0.0079	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	BEN_LUNG	0.29	1	0.0158	FALSE	119	124	24	18	0	FALSE	ACH-000603
BEN_LUNG	RPA3-AS1--ICA1	1	1	RPA3-AS1	9814	chr7:7841374:+	ICA1	28950	chr7:8198282:-	ONLY_REF_SPLICE	NO	38	165	0.05	0.01	0.0079	0.0079	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},RPA3-AS1->chr7:7680342-8043689:+,ICA1->chr7:8152814-8302317:-,islet_cell_autoantigen_1	BEN_LUNG	0.01	0.05	0.0158	FALSE	0	1	0	2	0	FALSE	ACH-000603
BEN_LUNG	SLC16A9--RP11-181F12.1	1	1	SLC16A9	5923	chr10:61432528:-	RP11-181F12.1	15870	chr10:86956689:-	ONLY_REF_SPLICE	YES	14	0	0.12	1	0.0079	0.0079	SLC16A9->chr10:61410523-61495760:-,solute_carrier_family_16_member_9,RP11-181F12.1->chr10:86953177-86957714:-	BEN_LUNG	0.12	1	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000603
BEN_LUNG	STK32C--PWWP2B	1	1	STK32C	14169	chr10:134036145:-	PWWP2B	21227	chr10:134218130:+	ONLY_REF_SPLICE	YES	113	35	0.02	0.05	0.0079	0.0079	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:-:+:[65321],STK32C->chr10:134020996-134145351:-,serine/threonine_kinase_32C,PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+	BEN_LUNG	0.02	0.05	0.0158	TRUE	0	0	0	1	0	FALSE	ACH-000603
BEN_LUNG	TM7SF3--MRPS35	1	1	TM7SF3	1357	chr12:27167011:-	MRPS35	21483	chr12:27867713:+	ONLY_REF_SPLICE	NO	885	2043	0	0	0.0079	0.0079	TM7SF3->chr12:27126128-27167367:-,transmembrane_7_superfamily_member_3,MRPS35->chr12:27863706-27909228:+,mitochondrial_ribosomal_protein_S35	BEN_LUNG	0	0	0.0158	FALSE	0	0	0	1	0	FALSE	ACH-000603
PANC1005_PANCREAS	CDC6--AC004231.2	75	25	CDC6	1458	chr17:38444342:+	AC004231.2	17211	chr17:39131749:+	ONLY_REF_SPLICE	YES	295	0	0.25	1	0.8917	0.2972	CDC6->Oncogene{Bushman},cell_division_cycle_6,chr17:38443885-38459171:+,AC004231.2->chr17:39077682-39132178:+	PANC1005_PANCREAS	0.25	1	1.1889	TRUE	0	0	0	1	0	TRUE	ACH-000060
PANC1005_PANCREAS	TIMM23B--LINC00843	53	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.6301	0.2259	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PANC1005_PANCREAS	0.99	1	0.856	TRUE	508	994	45	981	0	FALSE	ACH-000060
PANC1005_PANCREAS	ARMC10--OSR1	56	0	ARMC10	12353	chr7:102740016:+	OSR1	19766	chr2:19554191:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6658	0	GTEx_FI:{Blood_Vessel=[count:3=pct:0.8],Brain=[count:3=pct:0.5],Thyroid=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Esophagus=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Ovary=[count:1=pct:1.9]},ARMC10->armadillo_repeat_containing_10,chr7:102715328-102740205:+,OSR1->chr2:19551246-19558414:-,odd-skipped_related_transciption_factor_1	PANC1005_PANCREAS	1	1	0.6658	TRUE	15	4	0	8	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND4--MT-ND4L	7	147	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	41	0	0.79	1	0.0832	1.7477	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1005_PANCREAS	0.79	1	1.8309	FALSE	344	826	44	306	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND4--MT-ND4L	6	148	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	55	0	0.74	1	0.0713	1.7596	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1005_PANCREAS	0.74	1	1.8309	FALSE	344	827	44	306	0	FALSE	ACH-000060
PANC1005_PANCREAS	ZNF654--HMGB2	43	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5112	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	PANC1005_PANCREAS	1	1	0.5112	TRUE	0	0	0	518	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND4--MT-ND4L	4	149	MT-ND4	2041	chrM:11800:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	12231	0	0.01	1	0.0476	1.7714	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1005_PANCREAS	0.01	1	1.819	FALSE	344	826	44	305	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND4--MT-ND4L	3	150	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	911	0	0.14	1	0.0357	1.7833	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1005_PANCREAS	0.14	1	1.819	FALSE	344	827	44	306	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND4--MT-ND4L	3	124	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	4	0	0.97	1	0.0357	1.4742	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1005_PANCREAS	0.97	1	1.5099	FALSE	344	826	44	306	0	FALSE	ACH-000060
PANC1005_PANCREAS	TIMM23--RP11-464F9.1	31	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	156	4	0.18	0.9	0.3686	0.0476	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PANC1005_PANCREAS	0.18	0.9	0.4162	TRUE	519	3926	326	965	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND4--MT-ND4L	5	104	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0594	1.2364	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1005_PANCREAS	0.98	1	1.2958	FALSE	344	821	44	306	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND4--MT-ND4L	5	89	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	135	0	0.41	1	0.0594	1.0581	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1005_PANCREAS	0.41	1	1.1175	FALSE	344	827	44	306	0	FALSE	ACH-000060
PANC1005_PANCREAS	SLC30A7--RP11-192P3.4	23	14	SLC30A7	1596	chr1:101362227:+	RP11-192P3.4	24102	chr10:31548911:+	ONLY_REF_SPLICE	YES	49	0	0.43	1	0.2734	0.1664	SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7,RP11-192P3.4->chr10:31476812-31550839:+	PANC1005_PANCREAS	0.43	1	0.4398	TRUE	0	0	0	1	0	TRUE	ACH-000060
PANC1005_PANCREAS	MT-ND4--MT-ND4L	12	36	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	10954	0	0	1	0.1427	0.428	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1005_PANCREAS	0	1	0.5707	FALSE	328	800	43	304	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND6--MT-TE	19	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2259	0.0476	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC1005_PANCREAS	1	1	0.2735	FALSE	499	1288	110	792	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-CO3--MT-ATP6	10	36	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	2	0.96	0.96	0.1189	0.428	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1005_PANCREAS	0.96	0.96	0.5469	FALSE	189	492	56	216	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND4--MT-ND4L	8	22	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1340	0	0.02	1	0.0951	0.2616	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1005_PANCREAS	0.02	1	0.3567	FALSE	344	827	44	306	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-CO3--MT-ATP6	3	39	MT-CO3	1220	chrM:9426:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	2	0.91	0.95	0.0357	0.4637	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1005_PANCREAS	0.91	0.95	0.4994	FALSE	189	492	56	216	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-CO3--MT-ATP6	3	38	MT-CO3	1138	chrM:9344:+	MT-ATP6	4905	chrM:8647:+	INCL_NON_REF_SPLICE	YES	2	17	0.95	0.71	0.0357	0.4518	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1005_PANCREAS	0.71	0.95	0.4875	FALSE	189	492	56	216	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-CO3--MT-ATP6	3	38	MT-CO3	1155	chrM:9361:+	MT-ATP6	5219	chrM:8961:+	INCL_NON_REF_SPLICE	YES	3	8	0.93	0.84	0.0357	0.4518	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1005_PANCREAS	0.84	0.93	0.4875	FALSE	189	492	56	216	0	FALSE	ACH-000060
PANC1005_PANCREAS	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1427	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PANC1005_PANCREAS	1	1	0.1427	TRUE	0	0	0	434	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-CO3--MT-ATP6	3	35	MT-CO3	1090	chrM:9296:+	MT-ATP6	5050	chrM:8792:+	INCL_NON_REF_SPLICE	YES	1	18	0.97	0.68	0.0357	0.4161	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1005_PANCREAS	0.68	0.97	0.4518	FALSE	189	492	56	216	0	FALSE	ACH-000060
PANC1005_PANCREAS	C15orf57--CBX3	9	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	37	33	0.31	0.34	0.107	0.0951	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PANC1005_PANCREAS	0.31	0.34	0.2021	TRUE	267	562	48	632	0	FALSE	ACH-000060
PANC1005_PANCREAS	RP11-114H23.1--RP11-114H23.2	9	6	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.107	0.0713	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	PANC1005_PANCREAS	0.94	1	0.1783	FALSE	81	155	12	160	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND6--MT-TE	7	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0832	0.1427	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC1005_PANCREAS	1	1	0.2259	FALSE	499	1288	110	792	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND4--MT-ND4L	4	21	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	28	0	0.47	1	0.0476	0.2497	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1005_PANCREAS	0.47	1	0.2973	FALSE	344	826	44	306	0	FALSE	ACH-000060
PANC1005_PANCREAS	HLA-A--MT-ND1	8	3	HLA-A	2742	chr6:29910778:+	MT-ND1	8756	chrM:3437:+	INCL_NON_REF_SPLICE	YES	2831	4144	0	0	0.0951	0.0357	HLA-A->chr6:29909037-29913661:+,major_histocompatibility_complex,_class_I,_A,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PANC1005_PANCREAS	0	0	0.1308	FALSE	1	0	0	11	0	FALSE	ACH-000060
PANC1005_PANCREAS	RP11-123O10.4--GRIP1	8	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0951	0.0238	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PANC1005_PANCREAS	1	1	0.1189	FALSE	416	2512	207	587	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ATP6--MT-CO1	8	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	8758	19178	0	0	0.0951	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC1005_PANCREAS	0	0	0.107	FALSE	183	104	9	328	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND4--MT-ND4L	3	21	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0357	0.2497	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1005_PANCREAS	0.92	1	0.2854	FALSE	344	821	44	306	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND6--MT-TE	7	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0832	0.0594	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC1005_PANCREAS	1	1	0.1426	FALSE	499	1288	110	792	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-CO3--MT-ATP6	8	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0951	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1005_PANCREAS	1	1	0.0951	FALSE	189	492	56	216	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND1--MT-TL1	3	20	MT-ND1	1341	chrM:3647:+	MT-TL1	5012	chrM:3285:+	INCL_NON_REF_SPLICE	YES	10	0	0.7	1	0.0357	0.2378	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	PANC1005_PANCREAS	0.7	1	0.2735	FALSE	210	95	5	49	0	FALSE	ACH-000060
PANC1005_PANCREAS	PPAP2B--FAM188B2	8	0	PPAP2B	3948	chr1:57044551:-	FAM188B2	23393	chr3:150591154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0951	0	PPAP2B->Oncogene{Bushman},chr1:56960419-57110974:-,FAM188B2->chr3:150588832-150612089:-,family_with_sequence_similarity_188_member_B2	PANC1005_PANCREAS	1	1	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000060
PANC1005_PANCREAS	MT-ND1--MT-TL1	4	14	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0476	0.1664	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	PANC1005_PANCREAS	0.9	1	0.214	FALSE	210	95	5	49	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND6--MT-TE	5	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0.107	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC1005_PANCREAS	1	1	0.1664	FALSE	499	1288	110	792	0	FALSE	ACH-000060
PANC1005_PANCREAS	C15orf57--CBX3	6	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	34	33	0.23	0.23	0.0713	0.0476	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PANC1005_PANCREAS	0.23	0.23	0.1189	TRUE	267	562	48	632	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND1--MT-TL1	5	8	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0594	0.0951	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	PANC1005_PANCREAS	0.93	1	0.1545	FALSE	210	95	5	49	0	FALSE	ACH-000060
PANC1005_PANCREAS	RP11-96H19.1--RP11-446N19.1	5	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.92	0.92	0.0594	0.0832	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PANC1005_PANCREAS	0.92	0.92	0.1426	FALSE	467	2173	244	435	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-CO3--MT-ATP6	4	10	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	1	0.93	0.93	0.0476	0.1189	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1005_PANCREAS	0.93	0.93	0.1665	FALSE	189	492	56	216	0	FALSE	ACH-000060
PANC1005_PANCREAS	RP11-96H19.1--RP11-446N19.1	5	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.92	0.92	0.0594	0.0713	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PANC1005_PANCREAS	0.92	0.92	0.1307	FALSE	515	4851	409	746	0	FALSE	ACH-000060
PANC1005_PANCREAS	RP11-96H19.1--RP11-446N19.1	4	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0476	0.107	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PANC1005_PANCREAS	0.93	1	0.1546	FALSE	192	492	57	212	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND6--MT-TE	3	12	MT-ND6	1148	chrM:14526:-	MT-TE	4559	chrM:14709:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0.1427	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC1005_PANCREAS	1	1	0.1784	FALSE	499	1288	110	792	0	FALSE	ACH-000060
PANC1005_PANCREAS	MTATP6P1--MT-ND1	6	0	MTATP6P1	1126	chr1:569201:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0713	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PANC1005_PANCREAS	1	1	0.0713	FALSE	16	0	0	13	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND4--MT-ND4L	3	11	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	128	0	0.1	1	0.0357	0.1308	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1005_PANCREAS	0.1	1	0.1665	FALSE	344	827	44	306	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-CO3--MT-ATP6	5	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	2	1	0.78	0.88	0.0594	0.0238	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1005_PANCREAS	0.78	0.88	0.0832	FALSE	189	492	56	216	0	FALSE	ACH-000060
PANC1005_PANCREAS	ITGA3--TUBB	5	1	ITGA3	12301	chr17:48153818:+	TUBB	28691	chr6:30691270:+	INCL_NON_REF_SPLICE	YES	2039	2628	0	0	0.0594	0.0119	ITGA3->chr17:48133332-48167845:+,integrin_subunit_alpha_3,TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I	PANC1005_PANCREAS	0	0	0.0713	FALSE	0	0	0	5	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-CO3--MT-ATP6	3	8	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	1	1	0.92	0.92	0.0357	0.0951	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1005_PANCREAS	0.92	0.92	0.1308	FALSE	189	492	56	216	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND1--MT-TL1	5	0	MT-ND1	1053	chrM:3359:+	MT-TL1	5016	chrM:3289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	PANC1005_PANCREAS	1	1	0.0594	FALSE	210	95	5	49	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND4--MT-ND4L	4	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0476	0.0476	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1005_PANCREAS	1	1	0.0952	FALSE	344	821	44	306	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND1--MT-TL1	4	1	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0476	0.0119	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	PANC1005_PANCREAS	0.62	1	0.0595	FALSE	210	95	5	49	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-CO3--MT-ATP6	4	0	MT-CO3	1032	chrM:9238:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0476	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1005_PANCREAS	1	1	0.0476	FALSE	189	492	56	216	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0476	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1005_PANCREAS	1	1	0.0476	FALSE	344	821	44	306	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0476	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC1005_PANCREAS	1	1	0.0476	FALSE	499	1288	110	792	0	FALSE	ACH-000060
PANC1005_PANCREAS	MTATP6P1--MT-ND1	4	0	MTATP6P1	1098	chr1:569173:+	MT-ND1	4697	chrM:3322:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0476	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PANC1005_PANCREAS	1	1	0.0476	FALSE	16	0	0	13	0	FALSE	ACH-000060
PANC1005_PANCREAS	RP11-114H23.1--RP11-114H23.2	3	4	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0357	0.0476	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	PANC1005_PANCREAS	0.88	1	0.0833	FALSE	81	155	12	160	0	FALSE	ACH-000060
PANC1005_PANCREAS	RP11-96H19.1--RP11-446N19.1	2	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.91	1	0.0238	0.0951	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PANC1005_PANCREAS	0.91	1	0.1189	FALSE	407	2205	196	549	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ATP6--MT-CO1	3	3	MT-ATP6	1538	chrM:9064:+	MT-CO1	5213	chrM:6435:+	INCL_NON_REF_SPLICE	YES	3888	17733	0	0	0.0357	0.0357	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC1005_PANCREAS	0	0	0.0714	FALSE	183	104	9	328	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-CO2--MT-RNR2	3	3	MT-CO2	1359	chrM:7944:+	MT-RNR2	5232	chrM:2218:+	INCL_NON_REF_SPLICE	YES	13995	6983	0	0	0.0357	0.0357	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC1005_PANCREAS	0	0	0.0714	FALSE	24	6	1	8	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-CO3--MT-ATP6	3	3	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	3	1	0.67	0.86	0.0357	0.0357	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1005_PANCREAS	0.67	0.86	0.0714	FALSE	189	492	56	216	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ATP6--MT-CO1	3	2	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	YES	8584	17385	0	0	0.0357	0.0238	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC1005_PANCREAS	0	0	0.0595	FALSE	183	104	9	328	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-CO2--MT-RNR2	3	2	MT-CO2	1303	chrM:7888:+	MT-RNR2	5285	chrM:2271:+	INCL_NON_REF_SPLICE	YES	14106	6815	0	0	0.0357	0.0238	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC1005_PANCREAS	0	0	0.0595	FALSE	24	6	1	8	0	FALSE	ACH-000060
PANC1005_PANCREAS	EIF3B--MAD1L1	3	1	EIF3B	15726	chr7:2416710:+	MAD1L1	60993	chr7:1855864:-	ONLY_REF_SPLICE	YES	566	42	0.01	0.09	0.0357	0.0119	EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	PANC1005_PANCREAS	0.01	0.09	0.0476	FALSE	0	6	0	3	1	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ATP6--MT-CO1	3	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8875	19572	0	0	0.0357	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC1005_PANCREAS	0	0	0.0476	FALSE	183	104	9	328	0	FALSE	ACH-000060
PANC1005_PANCREAS	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8802	19471	0	0	0.0357	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC1005_PANCREAS	0	0	0.0476	FALSE	183	104	9	328	0	FALSE	ACH-000060
PANC1005_PANCREAS	ANP32B--SEPT7	3	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	PANC1005_PANCREAS	1	1	0.0357	TRUE	1	1	0	18	1	TRUE	ACH-000060
PANC1005_PANCREAS	EDF1--TPRN	3	0	EDF1	2690	chr9:139757740:-	TPRN	13208	chr9:140087143:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	{Klijn_CCL:Colo-Rectal=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,TPRN->chr9:140086069-140098645:-,taperin	PANC1005_PANCREAS	1	1	0.0357	TRUE	0	4	0	4	0	TRUE	ACH-000060
PANC1005_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC1005_PANCREAS	1	1	0.0357	FALSE	499	1288	110	792	0	FALSE	ACH-000060
PANC1005_PANCREAS	HMGA2--LUM	2	1	HMGA2	5315	chr12:66232349:+	LUM	30462	chr12:91498096:-	ONLY_REF_SPLICE	YES	54	1	0.05	0.75	0.0238	0.0119	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,LUM->chr12:91496406-91505608:-,lumican	PANC1005_PANCREAS	0.05	0.75	0.0357	TRUE	0	0	0	8	0	TRUE	ACH-000060
PANC1005_PANCREAS	BRI3BP--UBC	2	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	PANC1005_PANCREAS	1	1	0.0238	TRUE	5	99	5	34	0	FALSE	ACH-000060
PANC1005_PANCREAS	DYNLT1--COPB1	2	0	DYNLT1	5295	chr6:159058160:-	COPB1	28172	chr11:14482877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1,COPB1->chr11:14464986-14521573:-,coatomer_protein_complex_subunit_beta_1	PANC1005_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000060
PANC1005_PANCREAS	ZNF787--EEF1D	2	0	ZNF787	1109	chr19:56632541:-	EEF1D	20801	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	ZNF787->chr19:56598732-56632649:-,zinc_finger_protein_787,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	PANC1005_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000060
PANC1005_PANCREAS	RP11-114H23.1--RP11-114H23.2	1	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	1	2	0.75	0.6	0.0119	0.0238	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	PANC1005_PANCREAS	0.6	0.75	0.0357	FALSE	81	155	12	160	0	FALSE	ACH-000060
PANC1005_PANCREAS	CLMN--RP4-683M8.2	1	1	CLMN	1196	chr14:95786048:-	RP4-683M8.2	34429	chr1:48519883:+	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0119	0.0119	CLMN->calmin_(calponin-like,_transmembrane),chr14:95648277-95786243:-,RP4-683M8.2->chr1:48519217-48532873:+	PANC1005_PANCREAS	0.29	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000060
PANC1005_PANCREAS	RBM25--KTN1	1	1	RBM25	1270	chr14:73525413:+	KTN1	33788	chr14:56078737:+	ONLY_REF_SPLICE	NO	152	48	0.01	0.04	0.0119	0.0119	RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+,KTN1->Oncogene{Bushman},chr14:56025790-56168244:+,kinectin_1	PANC1005_PANCREAS	0.01	0.04	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000060
PANC1005_PANCREAS	RP11-435B5.4--XKR6	1	1	RP11-435B5.4	2843	chr1:143465380:-	XKR6	21389	chr8:11052730:-	ONLY_REF_SPLICE	YES	0	4	1	0.33	0.0119	0.0119	RP11-435B5.4->chr1:143354963-143467632:-,XKR6->XK_related_6,chr8:10753555-11058875:-	PANC1005_PANCREAS	0.33	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000060
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	62	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.7593	0.0122	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL27_UPPER_AERODIGESTIVE_TRACT	0.98	1	0.7715	FALSE	499	1288	110	792	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND1	57	1	MT-ND4	2043	chrM:11802:+	MT-ND1	5745	chrM:3673:+	INCL_NON_REF_SPLICE	NO	22097	8948	0	0.01	0.6981	0.0122	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CAL27_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.7103	FALSE	51	52	3	16	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	51	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.6246	0.0122	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL27_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.6368	FALSE	499	1288	110	792	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-CO1--MT-TS1	41	5	MT-CO1	2544	chrM:7447:+	MT-TS1	5544	chrM:7513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5021	0.0612	LOCAL_INVERSION:+:-:[1],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-TS1->chrM:7446-7514:-,mitochondrially_encoded_tRNA_serine_1_(UCN)	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.5633	FALSE	5	22	0	2	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-CO1--MT-TS1	38	0	MT-CO1	2512	chrM:7415:+	MT-TS1	5592	chrM:7465:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4654	0	LOCAL_INVERSION:+:-:[1],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-TS1->chrM:7446-7514:-,mitochondrially_encoded_tRNA_serine_1_(UCN)	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.4654	FALSE	5	22	0	2	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	34	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.96	0.4164	0.1837	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAL27_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.6001	TRUE	508	994	45	981	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	33	2	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	158	0	0.18	1	0.4042	0.0245	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0.18	1	0.4287	FALSE	344	827	44	306	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	18	52	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	10	2	0.88	0.97	0.2204	0.6369	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0.88	0.97	0.8573	FALSE	344	821	44	306	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	24	21	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	19804	0	0	1	0.2939	0.2572	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0	1	0.5511	FALSE	328	800	43	304	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	85	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	28	0	0.76	1	0.0735	1.041	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0.76	1	1.1145	FALSE	344	826	44	306	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	86	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	31	0	0.74	1	0.049	1.0533	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0.74	1	1.1023	FALSE	344	826	44	306	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	24	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2939	0.0245	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.3184	FALSE	462	80	0	856	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	71	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	10	2	0.88	0.97	0.0367	0.8695	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0.88	0.97	0.9062	FALSE	344	826	44	306	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	18	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	8	0	0.7	1	0.2204	0.0122	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0.7	1	0.2326	FALSE	344	821	44	306	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	18	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.2204	0.0122	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL27_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.2326	FALSE	499	1288	110	792	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	17	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2082	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.2082	TRUE	519	3926	326	965	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	19	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1659	0	0.02	1	0.147	0.2327	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0.02	1	0.3797	FALSE	344	827	44	306	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	13	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1592	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.1592	FALSE	462	80	0	856	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	10	7	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	12	11	0.59	0.61	0.1225	0.0857	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAL27_UPPER_AERODIGESTIVE_TRACT	0.59	0.61	0.2082	FALSE	189	492	56	216	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	10	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1225	0.049	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.1715	FALSE	416	2512	207	587	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	NUTM2A-AS1--MINPP1	9	7	NUTM2A-AS1	16801	chr10:89005872:-	MINPP1	27523	chr10:89268093:+	ONLY_REF_SPLICE	YES	27	47	0.37	0.25	0.1102	0.0857	GTEx_FI:{Skin=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	CAL27_UPPER_AERODIGESTIVE_TRACT	0.25	0.37	0.1959	TRUE	1	1	0	6	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	10	2	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.1225	0.0245	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL27_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.147	FALSE	499	1288	110	792	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	10	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1225	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.1225	FALSE	183	104	9	328	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	10	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1225	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.1225	FALSE	189	492	56	216	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	27	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	10	0	0.75	1	0.0367	0.3307	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0.75	1	0.3674	FALSE	344	821	44	306	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	2	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	54	0	0.17	1	0.1102	0.0245	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0.17	1	0.1347	FALSE	344	826	44	306	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	9	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1102	0.0122	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.1224	FALSE	462	80	0	856	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	9	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1102	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.1102	FALSE	230	198	14	283	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	6	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	23	33	0.42	0.34	0.0735	0.1347	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CAL27_UPPER_AERODIGESTIVE_TRACT	0.34	0.42	0.2082	TRUE	267	562	48	632	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	17	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	54	0	0.28	1	0.049	0.2082	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0.28	1	0.2572	FALSE	344	826	44	306	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	7	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	27620	4	0	0.73	0.0857	0.049	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL27_UPPER_AERODIGESTIVE_TRACT	0	0.73	0.1347	FALSE	231	217	16	283	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	8	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	67	0	0.17	1	0.0735	0.098	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0.17	1	0.1715	FALSE	344	826	44	306	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	8	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.098	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.098	FALSE	499	1288	110	792	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	6	7	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	23	13	0.36	0.5	0.0735	0.0857	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAL27_UPPER_AERODIGESTIVE_TRACT	0.36	0.5	0.1592	FALSE	189	492	56	216	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	7	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	18513	36049	0	0	0.0857	0.0122	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL27_UPPER_AERODIGESTIVE_TRACT	0	0	0.0979	FALSE	183	104	9	328	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	17	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	143	0	0.12	1	0.0367	0.2082	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0.12	1	0.2449	FALSE	344	827	44	306	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	8	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1898	0	0.01	1	0.0612	0.098	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.1592	FALSE	344	827	44	306	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0735	0.0245	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL27_UPPER_AERODIGESTIVE_TRACT	0.89	1	0.098	FALSE	499	1288	110	792	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	NUTM2A-AS1--MINPP1	5	6	NUTM2A-AS1	14159	chr10:89048199:-	MINPP1	27523	chr10:89268093:+	ONLY_REF_SPLICE	YES	32	47	0.26	0.19	0.0612	0.0735	GTEx_FI:{Skin=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	CAL27_UPPER_AERODIGESTIVE_TRACT	0.19	0.26	0.1347	TRUE	3	1	0	6	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	6	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	0	0.67	1	0.0735	0.0245	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL27_UPPER_AERODIGESTIVE_TRACT	0.67	1	0.098	FALSE	515	4851	409	746	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	4	9	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	2310	32452	0.01	0	0.049	0.1102	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL27_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.1592	FALSE	183	104	9	328	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	1	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	6	0	0.54	1	0.0735	0.0122	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0.54	1	0.0857	FALSE	344	821	44	306	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	2	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.64	1	0.0612	0.0245	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL27_UPPER_AERODIGESTIVE_TRACT	0.64	1	0.0857	FALSE	499	1288	110	792	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	C17orf76-AS1--RP1-68D18.3	5	1	C17orf76-AS1	1593	chr17:16342728:+	RP1-68D18.3	13205	chr11:35303362:+	INCL_NON_REF_SPLICE	YES	58	0	0.09	1	0.0612	0.0122	C17orf76-AS1->chr17:16342136-16381992:+,RP1-68D18.3->chr11:35303360-35307556:+	CAL27_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	5	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	27608	0	0	1	0.049	0.0612	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL27_UPPER_AERODIGESTIVE_TRACT	0	1	0.1102	FALSE	231	217	16	283	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	5	MT-ND4	2385	chrM:12144:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	0	2	1	0.82	0.049	0.0612	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL27_UPPER_AERODIGESTIVE_TRACT	0.82	1	0.1102	FALSE	209	205	15	279	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	1	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	6	0	0.5	1	0.0612	0.0122	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0.5	1	0.0734	FALSE	344	821	44	306	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0612	0.0122	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0734	FALSE	292	1546	117	613	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	5	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0612	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0612	FALSE	183	104	9	328	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0612	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0612	FALSE	351	233	23	137	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	26317	184	0	0.04	0.049	0.049	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL27_UPPER_AERODIGESTIVE_TRACT	0	0.04	0.098	FALSE	231	217	16	283	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	8	MT-ND4	1205	chrM:10964:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	59	0	0.16	1	0.0367	0.098	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0.16	1	0.1347	FALSE	344	826	44	306	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0612	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0612	TRUE	0	0	0	518	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	7	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	23	9	0.3	0.53	0.0367	0.0857	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAL27_UPPER_AERODIGESTIVE_TRACT	0.3	0.53	0.1224	FALSE	189	492	56	216	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	3	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	25328	2143	0	0	0.049	0.0367	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL27_UPPER_AERODIGESTIVE_TRACT	0	0	0.0857	FALSE	231	217	16	283	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	2	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	27521	750	0	0.01	0.049	0.0245	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL27_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0735	FALSE	231	217	16	283	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	4	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	18391	34041	0	0	0.049	0.0122	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL27_UPPER_AERODIGESTIVE_TRACT	0	0	0.0612	FALSE	183	104	9	328	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	5	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4376	36284	0	0	0.0367	0.0612	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL27_UPPER_AERODIGESTIVE_TRACT	0	0	0.0979	FALSE	183	104	9	328	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-CO1--MT-TS1	3	5	MT-CO1	2537	chrM:7440:+	MT-TS1	5537	chrM:7520:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0.0612	LOCAL_INVERSION:+:-:[1],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-TS1->chrM:7446-7514:-,mitochondrially_encoded_tRNA_serine_1_(UCN)	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0979	FALSE	5	22	0	2	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	1	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	22	0	0.19	1	0.049	0.0122	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAL27_UPPER_AERODIGESTIVE_TRACT	0.19	1	0.0612	FALSE	189	492	56	216	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	1	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	158	0	0.03	1	0.049	0.0122	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL27_UPPER_AERODIGESTIVE_TRACT	0.03	1	0.0612	FALSE	344	827	44	306	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	1	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.049	0.0122	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL27_UPPER_AERODIGESTIVE_TRACT	0.56	1	0.0612	FALSE	499	1288	110	792	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	4	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	27369	0	0	1	0.0367	0.049	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL27_UPPER_AERODIGESTIVE_TRACT	0	1	0.0857	FALSE	231	217	16	283	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.049	FALSE	499	1288	110	792	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1027	chrM:14647:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.049	FALSE	499	1288	110	792	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1394	chrM:11153:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	27062	0	0	1	0.0367	0.0245	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL27_UPPER_AERODIGESTIVE_TRACT	0	1	0.0612	FALSE	231	217	16	283	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	2	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.0367	0.0245	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL27_UPPER_AERODIGESTIVE_TRACT	0.56	1	0.0612	FALSE	499	1288	110	792	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.67	1	0.0245	0.0735	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL27_UPPER_AERODIGESTIVE_TRACT	0.67	1	0.098	FALSE	407	2205	196	549	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MPP5--GPHN	3	1	MPP5	1425	chr14:67708250:+	GPHN	46695	chr14:67555700:+	ONLY_REF_SPLICE	YES	17	33	0.19	0.11	0.0367	0.0122	YOSHIHARA_TCGA_num_samples[BLCA:2|BRCA:1|LUAD:2],{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[59306],MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	CAL27_UPPER_AERODIGESTIVE_TRACT	0.11	0.19	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	1	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	22	0	0.15	1	0.0367	0.0122	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAL27_UPPER_AERODIGESTIVE_TRACT	0.15	1	0.0489	FALSE	189	492	56	216	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	16	0	0.2	1	0.0367	0.0122	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAL27_UPPER_AERODIGESTIVE_TRACT	0.2	1	0.0489	FALSE	189	492	56	216	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	1	MT-CO3	1396	chrM:9602:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	11	0	0.27	1	0.0367	0.0122	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAL27_UPPER_AERODIGESTIVE_TRACT	0.27	1	0.0489	FALSE	189	492	56	216	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	1	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0.0122	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0489	FALSE	462	80	0	856	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-CO1--MT-TS1	3	0	MT-CO1	2371	chrM:7274:+	MT-TS1	5598	chrM:7459:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_INVERSION:+:-:[1],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-TS1->chrM:7446-7514:-,mitochondrially_encoded_tRNA_serine_1_(UCN)	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0367	FALSE	5	22	0	2	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-CO1--MT-TS1	3	0	MT-CO1	2347	chrM:7250:+	MT-TS1	5573	chrM:7484:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_INVERSION:+:-:[1],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-TS1->chrM:7446-7514:-,mitochondrially_encoded_tRNA_serine_1_(UCN)	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0367	FALSE	5	22	0	2	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0367	FALSE	499	1288	110	792	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0367	FALSE	499	1288	110	792	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0122	0.0857	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0979	FALSE	192	492	57	212	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.25	1	0.0245	0.0245	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL27_UPPER_AERODIGESTIVE_TRACT	0.25	1	0.049	FALSE	125	705	46	456	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	CD47--STX17	2	0	CD47	1163	chr3:107809710:-	STX17	25292	chr9:102677460:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	CD47->CD47_molecule,chr3:107762145-107809872:-,STX17->chr9:102668915-102732618:+,syntaxin_17	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	EPHB2--LPGAT1	2	0	EPHB2	8566	chr1:23191705:+	LPGAT1	32959	chr1:211952386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	EPHB2->EPH_receptor_B2,chr1:23037332-23241818:+,LPGAT1->chr1:211916799-212004114:-,lysophosphatidylglycerol_acyltransferase_1	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	HEATR5B--ODF2L	2	0	HEATR5B	4375	chr2:37304054:-	ODF2L	58252	chr1:86826219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	HEATR5B->HEAT_repeat_containing_5B,chr2:37195526-37311485:-,ODF2L->chr1:86814344-86862023:-,outer_dense_fiber_of_sperm_tails_2_like	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	PDS5B--N4BP2L2	2	0	PDS5B	1167	chr13:33160730:+	N4BP2L2	61684	chr13:33054774:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	LOCAL_INVERSION:+:-:[47594],PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	POLD2--PSMB1	2	0	POLD2	3525	chr7:44161433:-	PSMB1	13684	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	POLD2->chr7:44154286-44163957:-,polymerase_(DNA)_delta_2,_accessory_subunit,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	POLR2J4--CHD2	2	0	POLR2J4	4398	chr7:44053192:-	CHD2	50467	chr15:93510555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	POLR2J4->chr7:43980494-44058774:-,chr7:44053161-44058769:-,polymerase_(RNA)_II_subunit_J4,_pseudogene,CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAL27_UPPER_AERODIGESTIVE_TRACT	1	1	0.0245	TRUE	465	1949	224	605	0	FALSE	ACH-000832
CAL27_UPPER_AERODIGESTIVE_TRACT	MX2--BACE2	1	1	MX2	14342	chr21:42754491:+	BACE2	45028	chr21:42629085:+	ONLY_REF_SPLICE	YES	154	283	0.01	0.01	0.0122	0.0122	LOCAL_REARRANGEMENT:+:[79425],MX2->MX_dynamin_like_GTPase_2,chr21:42733870-42781317:+,BACE2->beta-site_APP-cleaving_enzyme_2,chr21:42539728-42654445:+	CAL27_UPPER_AERODIGESTIVE_TRACT	0.01	0.01	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000832
HT144_SKIN	TIMM23B--LINC00843	83	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1541	0.3615	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HT144_SKIN	1	1	1.5156	TRUE	508	994	45	981	0	FALSE	ACH-000322
HT144_SKIN	TIMM23--RP11-464F9.1	54	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	264	3	0.17	0.95	0.7508	0.0139	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HT144_SKIN	0.17	0.95	0.7647	TRUE	519	3926	326	965	0	FALSE	ACH-000322
HT144_SKIN	GPC6--GCHFR	27	18	GPC6	7767	chr13:94958377:+	GCHFR	20264	chr15:41058025:+	ONLY_REF_SPLICE	YES	79	7	0.36	0.87	0.3754	0.2503	{Klijn_CCL:Skin=1},GPC6->chr13:93879095-95059655:+,glypican_6,GCHFR->GTP_cyclohydrolase_I_feedback_regulator,chr15:41056218-41059906:+	HT144_SKIN	0.36	0.87	0.6257	TRUE	0	0	0	1	0	TRUE	ACH-000322
HT144_SKIN	BAGE2--CTBP2P1	27	9	BAGE2	5645	chr21:11058161:-	CTBP2P1	23085	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	21	0	0.63	1	0.3754	0.1251	BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	HT144_SKIN	0.63	1	0.5005	TRUE	0	0	0	6	0	TRUE	ACH-000322
HT144_SKIN	C15orf57--CBX3	16	20	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	34	31	0.51	0.54	0.2225	0.2781	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HT144_SKIN	0.51	0.54	0.5006	TRUE	267	562	48	632	0	FALSE	ACH-000322
HT144_SKIN	MT-ND6--MT-TE	19	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2642	0.0278	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT144_SKIN	1	1	0.292	FALSE	499	1288	110	792	0	FALSE	ACH-000322
HT144_SKIN	CORO7--NMRAL1	17	4	CORO7	3926	chr16:4466460:-	NMRAL1	30789	chr16:4531880:-	ONLY_REF_SPLICE	YES	51	0	0.29	1	0.2364	0.0556	LOCAL_REARRANGEMENT:-:[35975],CORO7->chr16:4404543-4475706:-,coronin_7,NMRAL1->NmrA-like_family_domain_containing_1,chr16:4511681-4545764:-	HT144_SKIN	0.29	1	0.292	TRUE	0	0	0	1	0	TRUE	ACH-000322
HT144_SKIN	RP11-444D3.1--SOX5	16	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	19	1	0.55	0.2225	0.0973	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HT144_SKIN	0.55	1	0.3198	TRUE	477	1352	189	275	0	FALSE	ACH-000322
HT144_SKIN	C15orf57--CBX3	11	15	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	33	31	0.44	0.46	0.153	0.2086	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HT144_SKIN	0.44	0.46	0.3616	TRUE	267	562	48	632	0	FALSE	ACH-000322
HT144_SKIN	MT-ND6--MT-TE	12	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1669	0.139	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT144_SKIN	1	1	0.3059	FALSE	499	1288	110	792	0	FALSE	ACH-000322
HT144_SKIN	MT-TA--MT-TC	13	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1808	0.0278	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HT144_SKIN	1	1	0.2086	FALSE	462	80	0	856	0	FALSE	ACH-000322
HT144_SKIN	TRIM37--AC073094.4	10	2	TRIM37	25485	chr17:57094657:-	AC073094.4	36610	chr7:1308598:+	ONLY_REF_SPLICE	YES	54	0	0.18	1	0.139	0.0278	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,AC073094.4->chr7:1306989-1308903:+	HT144_SKIN	0.18	1	0.1668	TRUE	0	0	0	1	0	TRUE	ACH-000322
HT144_SKIN	MT-ND6--MT-TE	9	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1251	0.0278	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT144_SKIN	1	1	0.1529	FALSE	499	1288	110	792	0	FALSE	ACH-000322
HT144_SKIN	RP11-141M1.3--STARD13	6	9	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	5	60	0.75	0.2	0.0834	0.1251	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HT144_SKIN	0.2	0.75	0.2085	FALSE	141	264	50	91	0	FALSE	ACH-000322
HT144_SKIN	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	13	1	0.35	0.0834	0.0139	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HT144_SKIN	0.35	1	0.0973	TRUE	465	1949	224	605	0	FALSE	ACH-000322
HT144_SKIN	MTAP--CDKN2B-AS1	4	7	MTAP	12211	chr9:21859424:+	CDKN2B-AS1	33636	chr9:22063943:+	ONLY_REF_SPLICE	YES	158	0	0.07	1	0.0556	0.0973	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT144_SKIN	0.07	1	0.1529	FALSE	0	2	0	2	0	FALSE	ACH-000322
HT144_SKIN	MT-ND6--MT-TE	3	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0417	0.1112	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT144_SKIN	1	1	0.1529	FALSE	499	1288	110	792	0	FALSE	ACH-000322
HT144_SKIN	MTAP--CDKN2B-AS1	3	8	MTAP	18287	chr9:21866841:+	CDKN2B-AS1	33636	chr9:22063943:+	INCL_NON_REF_SPLICE	YES	3	0	0.79	1	0.0417	0.1112	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT144_SKIN	0.79	1	0.1529	FALSE	0	0	0	1	0	FALSE	ACH-000322
HT144_SKIN	RP11-141M1.3--STARD13	2	11	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	NO	6	60	0.68	0.18	0.0278	0.153	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HT144_SKIN	0.18	0.68	0.1808	FALSE	49	120	16	70	0	FALSE	ACH-000322
HT144_SKIN	RP11-680G10.1--GSE1	4	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0556	0.0417	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HT144_SKIN	1	1	0.0973	TRUE	458	1351	185	561	0	FALSE	ACH-000322
HT144_SKIN	MTAP--CDKN2B-AS1	3	6	MTAP	12211	chr9:21859424:+	CDKN2B-AS1	36403	chr9:22077678:+	ONLY_REF_SPLICE	YES	158	0	0.05	1	0.0417	0.0834	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT144_SKIN	0.05	1	0.1251	FALSE	0	1	1	2	0	FALSE	ACH-000322
HT144_SKIN	NRIP1--AF127936.7	4	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.38	1	0.0556	0.0278	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HT144_SKIN	0.38	1	0.0834	FALSE	125	705	46	456	0	FALSE	ACH-000322
HT144_SKIN	LINC01036--LINC01037	4	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0556	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HT144_SKIN	1	1	0.0556	FALSE	0	24	0	62	0	FALSE	ACH-000322
HT144_SKIN	RP11-444D3.1--SOX5	3	4	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	19	1	0.27	0.0417	0.0556	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HT144_SKIN	0.27	1	0.0973	TRUE	274	363	69	150	0	FALSE	ACH-000322
HT144_SKIN	SLC1A5--MT-ND4L	4	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0556	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HT144_SKIN	1	1	0.0556	FALSE	0	0	0	189	0	FALSE	ACH-000322
HT144_SKIN	MTAP--CDKN2B-AS1	3	3	MTAP	13580	chr9:21862134:+	CDKN2B-AS1	38778	chr9:22096371:+	INCL_NON_REF_SPLICE	YES	123	3	0.05	0.67	0.0417	0.0417	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT144_SKIN	0.05	0.67	0.0834	FALSE	0	1	0	1	0	FALSE	ACH-000322
HT144_SKIN	RP11-444D3.1--SOX5	2	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	27	1	0.25	0.0278	0.0973	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HT144_SKIN	0.25	1	0.1251	TRUE	160	277	29	98	0	FALSE	ACH-000322
HT144_SKIN	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0417	0.0139	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HT144_SKIN	0.67	1	0.0556	FALSE	292	1546	117	613	0	FALSE	ACH-000322
HT144_SKIN	AC104389.28--HBE1	3	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HT144_SKIN	1	1	0.0417	TRUE	0	16	0	53	13	FALSE	ACH-000322
HT144_SKIN	RP11-141M1.3--STARD13	2	2	RP11-141M1.3	8903	chr13:34013828:-	STARD13	26750	chr13:33716510:-	ONLY_REF_SPLICE	YES	5	48	0.44	0.08	0.0278	0.0278	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HT144_SKIN	0.08	0.44	0.0556	FALSE	1	5	1	7	0	FALSE	ACH-000322
HT144_SKIN	CREB3L2--TSHB	2	1	CREB3L2	1464	chr7:137686350:-	TSHB	27137	chr1:115575983:+	ONLY_REF_SPLICE	YES	91	0	0.03	1	0.0278	0.0139	CREB3L2->Oncogene{Bushman},cAMP_responsive_element_binding_protein_3-like_2,chr7:137559725-137686813:-,TSHB->chr1:115572415-115576941:+,thyroid_stimulating_hormone_beta	HT144_SKIN	0.03	1	0.0417	TRUE	0	0	0	1	0	FALSE	ACH-000322
HT144_SKIN	RP1-34H18.1--NAV3	2	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0.0139	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HT144_SKIN	1	1	0.0417	TRUE	254	575	65	124	0	FALSE	ACH-000322
HT144_SKIN	MTAP--CDKN2B-AS1	1	4	MTAP	9899	chr9:21854869:+	CDKN2B-AS1	37616	chr9:22092307:+	ONLY_REF_SPLICE	YES	126	0	0.04	1	0.0139	0.0556	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT144_SKIN	0.04	1	0.0695	FALSE	0	1	0	2	0	FALSE	ACH-000322
HT144_SKIN	MTAP--CDKN2B-AS1	1	4	MTAP	11005	chr9:21856222:+	CDKN2B-AS1	36403	chr9:22077678:+	ONLY_REF_SPLICE	NO	137	0	0.04	1	0.0139	0.0556	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT144_SKIN	0.04	1	0.0695	FALSE	0	0	0	1	0	FALSE	ACH-000322
HT144_SKIN	PPP6R2--C19orf48	2	0	PPP6R2	2378	chr22:50810579:+	C19orf48	30816	chr19:51305514:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2,C19orf48->chr19:51300961-51308186:-,chromosome_19_open_reading_frame_48	HT144_SKIN	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000322
HT144_SKIN	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HT144_SKIN	1	1	0.0278	FALSE	416	2512	207	587	0	FALSE	ACH-000322
HT144_SKIN	UCN2--COL7A1	2	0	UCN2	1071	chr3:48601136:-	COL7A1	32167	chr3:48606288:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	LOCAL_REARRANGEMENT:-:[300],UCN2->chr3:48599160-48601206:-,urocortin_2,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	HT144_SKIN	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000322
HT144_SKIN	MTAP--CDKN2B-AS1	1	3	MTAP	12211	chr9:21859424:+	CDKN2B-AS1	38778	chr9:22096371:+	ONLY_REF_SPLICE	YES	158	3	0.02	0.57	0.0139	0.0417	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT144_SKIN	0.02	0.57	0.0556	FALSE	0	1	0	2	0	FALSE	ACH-000322
HT144_SKIN	MTAP--CDKN2B-AS1	1	3	MTAP	12211	chr9:21859424:+	CDKN2B-AS1	39664	chr9:22097257:+	ONLY_REF_SPLICE	NO	158	4	0.02	0.5	0.0139	0.0417	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT144_SKIN	0.02	0.5	0.0556	FALSE	0	1	0	2	0	FALSE	ACH-000322
HT144_SKIN	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0139	0.0417	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HT144_SKIN	1	1	0.0556	FALSE	407	2205	196	549	0	FALSE	ACH-000322
HT144_SKIN	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0.0278	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HT144_SKIN	1	1	0.0417	FALSE	515	4851	409	746	0	FALSE	ACH-000322
HT144_SKIN	ZHX3--GSS	1	2	ZHX3	1811	chr20:39945502:-	GSS	29603	chr20:33533901:-	ONLY_REF_SPLICE	YES	6	348	0.33	0.01	0.0139	0.0278	ZHX3->chr20:39807088-39946312:-,zinc_fingers_and_homeoboxes_3,GSS->chr20:33516236-33543620:-,glutathione_synthetase	HT144_SKIN	0.01	0.33	0.0417	FALSE	0	0	0	1	0	FALSE	ACH-000322
HT144_SKIN	COL19A1--LMBRD1	1	1	COL19A1	15565	chr6:70672762:+	LMBRD1	65099	chr6:70428973:-	ONLY_REF_SPLICE	NO	53	28	0.04	0.07	0.0139	0.0139	GTEx_v2:{count=4;pct=0.05%;dist=Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellar_Hemisphere=1,Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:+:-:[69460],COL19A1->Oncogene{Bushman},chr6:70576463-70919679:+,collagen_type_XIX_alpha_1,LMBRD1->LMBR1_domain_containing_1,chr6:70385694-70507003:-	HT144_SKIN	0.04	0.07	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000322
HT144_SKIN	COL19A1--LMBRD1	1	1	COL19A1	23238	chr6:70812114:+	LMBRD1	58532	chr6:70500364:-	ONLY_REF_SPLICE	YES	46	25	0.04	0.07	0.0139	0.0139	GTEx_v2:{count=4;pct=0.05%;dist=Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellar_Hemisphere=1,Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:+:-:[69460],COL19A1->Oncogene{Bushman},chr6:70576463-70919679:+,collagen_type_XIX_alpha_1,LMBRD1->LMBR1_domain_containing_1,chr6:70385694-70507003:-	HT144_SKIN	0.04	0.07	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000322
HT144_SKIN	COL19A1--LMBRD1	1	1	COL19A1	15565	chr6:70672762:+	LMBRD1	71796	chr6:70386433:-	ONLY_REF_SPLICE	NO	53	29	0.04	0.06	0.0139	0.0139	GTEx_v2:{count=4;pct=0.05%;dist=Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellar_Hemisphere=1,Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:+:-:[69460],COL19A1->Oncogene{Bushman},chr6:70576463-70919679:+,collagen_type_XIX_alpha_1,LMBRD1->LMBR1_domain_containing_1,chr6:70385694-70507003:-	HT144_SKIN	0.04	0.06	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000322
HT144_SKIN	COL8A1--CMSS1	1	1	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	196	422	0.01	0	0.0139	0.0139	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HT144_SKIN	0	0.01	0.0278	FALSE	38	10	2	29	0	FALSE	ACH-000322
HT144_SKIN	CTD-2033A16.3--NQO1	1	1	CTD-2033A16.3	1163	chr16:69761078:+	NQO1	7112	chr16:69752437:-	ONLY_REF_SPLICE	YES	3	1864	0.4	0	0.0139	0.0139	LOCAL_INVERSION:+:-:[62],CTD-2033A16.3->chr16:69760916-69776466:+,NQO1->NAD(P)H_quinone_dehydrogenase_1,Oncogene{Bushman},chr16:69740899-69760854:-	HT144_SKIN	0	0.4	0.0278	FALSE	0	0	0	3	0	FALSE	ACH-000322
HT144_SKIN	MTAP--CDKN2B-AS1	1	1	MTAP	9899	chr9:21854869:+	CDKN2B-AS1	38778	chr9:22096371:+	ONLY_REF_SPLICE	NO	126	3	0.02	0.4	0.0139	0.0139	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HT144_SKIN	0.02	0.4	0.0278	FALSE	0	0	0	3	0	FALSE	ACH-000322
HT144_SKIN	TRIM37--AC073094.4	1	1	TRIM37	24356	chr17:57105776:-	AC073094.4	36610	chr7:1308598:+	ONLY_REF_SPLICE	YES	50	0	0.04	1	0.0139	0.0139	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,AC073094.4->chr7:1306989-1308903:+	HT144_SKIN	0.04	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000322
HT144_SKIN	VAPB--GNAS	1	1	VAPB	3372	chr20:56993419:+	GNAS	36861	chr20:57470667:+	ONLY_REF_SPLICE	YES	267	1493	0.01	0	0.0139	0.0139	VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HT144_SKIN	0	0.01	0.0278	FALSE	0	5	0	4	0	FALSE	ACH-000322
HT144_SKIN	VAPB--GNAS	1	1	VAPB	1396	chr20:56964573:+	GNAS	36861	chr20:57470667:+	ONLY_REF_SPLICE	YES	229	1493	0.01	0	0.0139	0.0139	VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HT144_SKIN	0	0.01	0.0278	FALSE	0	3	0	7	1	FALSE	ACH-000322
HCC70_BREAST	C5orf22--PDCD6	42	27	C5orf22	2262	chr5:31534432:+	PDCD6	27851	chr5:311408:+	ONLY_REF_SPLICE	YES	125	909	0.36	0.07	0.4775	0.3069	C5orf22->chr5:31532373-31555165:+,chromosome_5_open_reading_frame_22,PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6	HCC70_BREAST	0.07	0.36	0.7844	TRUE	0	0	0	1	0	TRUE	ACH-000668
HCC70_BREAST	TIMM23B--LINC00843	29	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3297	0.1819	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC70_BREAST	1	1	0.5116	TRUE	508	994	45	981	0	FALSE	ACH-000668
HCC70_BREAST	MT-ND6--MT-TE	26	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.2956	0.0114	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC70_BREAST	0.93	1	0.307	FALSE	499	1288	110	792	0	FALSE	ACH-000668
HCC70_BREAST	MT-TA--MT-TC	25	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2842	0.0341	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC70_BREAST	1	1	0.3183	FALSE	462	80	0	856	0	FALSE	ACH-000668
HCC70_BREAST	RP11-123O10.4--GRIP1	21	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2387	0.1023	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC70_BREAST	1	1	0.341	FALSE	416	2512	207	587	0	FALSE	ACH-000668
HCC70_BREAST	TIMM23--RP11-464F9.1	20	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	158	4	0.12	0.85	0.2274	0.0227	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC70_BREAST	0.12	0.85	0.2501	TRUE	519	3926	326	965	0	FALSE	ACH-000668
HCC70_BREAST	PLXDC1--TAF13	18	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2046	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCC70_BREAST	1	1	0.2046	TRUE	7	10	0	216	0	FALSE	ACH-000668
HCC70_BREAST	C5orf22--PDCD6	9	33	C5orf22	2354	chr5:31534524:+	PDCD6	27851	chr5:311408:+	ONLY_REF_SPLICE	YES	160	909	0.21	0.04	0.1023	0.3752	C5orf22->chr5:31532373-31555165:+,chromosome_5_open_reading_frame_22,PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6	HCC70_BREAST	0.04	0.21	0.4775	TRUE	0	0	0	1	0	TRUE	ACH-000668
HCC70_BREAST	MT-ND6--MT-TE	15	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.1705	0.0909	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC70_BREAST	0.85	1	0.2614	FALSE	499	1288	110	792	0	FALSE	ACH-000668
HCC70_BREAST	PDCD6--SLC12A7	13	7	PDCD6	2152	chr5:272887:+	SLC12A7	22117	chr5:1094363:-	ONLY_REF_SPLICE	YES	1151	22	0.02	0.48	0.1478	0.0796	PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,SLC12A7->chr5:1050499-1112150:-,solute_carrier_family_12_member_7	HCC70_BREAST	0.02	0.48	0.2274	TRUE	0	0	0	1	0	FALSE	ACH-000668
HCC70_BREAST	MT-ND6--MT-TE	14	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.1592	0.0227	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC70_BREAST	0.89	1	0.1819	FALSE	499	1288	110	792	0	FALSE	ACH-000668
HCC70_BREAST	NIPA2--POLA1	14	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1592	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	HCC70_BREAST	1	1	0.1592	TRUE	46	1352	75	139	0	FALSE	ACH-000668
HCC70_BREAST	MT-TA--MT-TC	9	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1023	0.0341	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC70_BREAST	1	1	0.1364	FALSE	462	80	0	856	0	FALSE	ACH-000668
HCC70_BREAST	MT-ND6--MT-TE	5	12	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.81	1	0.0568	0.1364	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC70_BREAST	0.81	1	0.1932	FALSE	499	1288	110	792	0	FALSE	ACH-000668
HCC70_BREAST	RP11-114H23.1--RP11-114H23.2	7	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0796	0.0341	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC70_BREAST	0.83	1	0.1137	FALSE	81	155	12	160	0	FALSE	ACH-000668
HCC70_BREAST	MT-ND6--MT-TE	3	18	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0.2046	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC70_BREAST	1	1	0.2387	FALSE	499	1288	110	792	0	FALSE	ACH-000668
HCC70_BREAST	MT-ND6--MT-TE	3	12	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.79	1	0.0341	0.1364	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC70_BREAST	0.79	1	0.1705	FALSE	499	1288	110	792	0	FALSE	ACH-000668
HCC70_BREAST	MT-ND5--MT-ND4	3	10	MT-ND5	2317	chrM:13653:+	MT-ND4	5977	chrM:10924:+	INCL_NON_REF_SPLICE	YES	4531	4549	0	0	0.0341	0.1137	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HCC70_BREAST	0	0	0.1478	FALSE	30	27	1	23	0	FALSE	ACH-000668
HCC70_BREAST	NPR3--LMBRD2	5	2	NPR3	3494	chr5:32710889:+	LMBRD2	35185	chr5:36115222:-	ONLY_REF_SPLICE	YES	29	59	0.19	0.11	0.0568	0.0227	NPR3->chr5:32689176-32791819:+,natriuretic_peptide_receptor_3,LMBRD2->LMBR1_domain_containing_2,chr5:36098514-36152063:-	HCC70_BREAST	0.11	0.19	0.0795	TRUE	0	0	0	1	0	TRUE	ACH-000668
HCC70_BREAST	MT-ND6--MT-TE	3	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0341	0.0909	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC70_BREAST	0.85	1	0.125	FALSE	499	1288	110	792	0	FALSE	ACH-000668
HCC70_BREAST	MT-ND5--MT-ND4	3	7	MT-ND5	1673	chrM:13009:+	MT-ND4	5950	chrM:10897:+	INCL_NON_REF_SPLICE	YES	3565	2935	0	0	0.0341	0.0796	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HCC70_BREAST	0	0	0.1137	FALSE	28	25	0	21	0	FALSE	ACH-000668
HCC70_BREAST	RP11-1415C14.4--TERT	3	7	RP11-1415C14.4	1188	chr5:69503385:-	TERT	10256	chr5:1294781:-	ONLY_REF_SPLICE	YES	34	0	0.23	1	0.0341	0.0796	RP11-1415C14.4->chr5:69435402-69503572:-,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	HCC70_BREAST	0.23	1	0.1137	TRUE	0	0	0	1	0	TRUE	ACH-000668
HCC70_BREAST	MT-CO2--MT-CO1	3	5	MT-CO2	1256	chrM:7841:+	MT-CO1	5313	chrM:6532:+	INCL_NON_REF_SPLICE	YES	10	19581	0.44	0	0.0341	0.0568	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC70_BREAST	0	0.44	0.0909	FALSE	36	10	0	27	0	FALSE	ACH-000668
HCC70_BREAST	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.45	1	0.0455	0.0114	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC70_BREAST	0.45	1	0.0569	FALSE	292	1546	117	613	0	FALSE	ACH-000668
HCC70_BREAST	MT-ND5--MT-ND4	4	0	MT-ND5	2303	chrM:13639:+	MT-ND4	6911	chrM:11858:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0455	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HCC70_BREAST	1	1	0.0455	FALSE	47	29	1	23	0	FALSE	ACH-000668
HCC70_BREAST	MT-ND5--MT-ND4	3	4	MT-ND5	2131	chrM:13467:+	MT-ND4	6148	chrM:11095:+	INCL_NON_REF_SPLICE	YES	5703	13143	0	0	0.0341	0.0455	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HCC70_BREAST	0	0	0.0796	FALSE	47	29	1	25	0	FALSE	ACH-000668
HCC70_BREAST	MT-ND6--MT-TE	3	3	MT-ND6	1198	chrM:14476:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0341	0.0341	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC70_BREAST	0.6	1	0.0682	FALSE	499	1288	110	792	0	FALSE	ACH-000668
HCC70_BREAST	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.19	1	0.0341	0.0227	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC70_BREAST	0.19	1	0.0568	FALSE	125	705	46	456	0	FALSE	ACH-000668
HCC70_BREAST	RP11-1415C14.4--TERT	2	6	RP11-1415C14.4	1188	chr5:69503385:-	TERT	12996	chr5:1282739:-	ONLY_REF_SPLICE	YES	34	0	0.19	1	0.0227	0.0682	RP11-1415C14.4->chr5:69435402-69503572:-,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	HCC70_BREAST	0.19	1	0.0909	TRUE	0	0	0	1	0	TRUE	ACH-000668
HCC70_BREAST	CLTA--PTMA	3	0	CLTA	7873	chr9:36211754:+	PTMA	18088	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	CLTA->chr9:36190853-36304778:+,clathrin_light_chain_A,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC70_BREAST	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000668
HCC70_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC70_BREAST	1	1	0.0341	FALSE	499	1288	110	792	0	FALSE	ACH-000668
HCC70_BREAST	NRIP1--AF127936.7	1	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	37	0	0.14	1	0.0114	0.0568	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC70_BREAST	0.14	1	0.0682	FALSE	164	806	69	479	0	FALSE	ACH-000668
HCC70_BREAST	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	5	74	0.38	0.04	0.0227	0.0114	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC70_BREAST	0.04	0.38	0.0341	FALSE	16	356	14	466	0	FALSE	ACH-000668
HCC70_BREAST	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0.0114	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC70_BREAST	1	1	0.0341	FALSE	93	270	15	244	0	FALSE	ACH-000668
HCC70_BREAST	IFT172--FAM120AOS	2	0	IFT172	1175	chr2:27712482:-	FAM120AOS	37430	chr9:96212881:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	IFT172->chr2:27667238-27712656:-,intraflagellar_transport_172,FAM120AOS->chr9:96208776-96215874:-,family_with_sequence_similarity_120A_opposite_strand	HCC70_BREAST	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000668
HCC70_BREAST	NEK7--ASPM	2	0	NEK7	15246	chr1:198262169:+	ASPM	53132	chr1:197056102:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NEK7->NIMA_related_kinase_7,chr1:198126093-198291550:+,ASPM->Oncogene{Bushman},abnormal_spindle_microtubule_assembly,chr1:197053258-197115824:-	HCC70_BREAST	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000668
HCC70_BREAST	SBF2-AS1--NEBL	2	0	SBF2-AS1	1212	chr11:9780050:+	NEBL	50484	chr10:21101869:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	SBF2-AS1->SBF2_antisense_RNA_1,chr11:9779839-9832866:+,NEBL->chr10:21068902-21463116:-,nebulette	HCC70_BREAST	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000668
HCC70_BREAST	CDKAL1--E2F3	1	1	CDKAL1	4234	chr6:20548936:+	E2F3	29447	chr6:20488344:+	ONLY_REF_SPLICE	YES	40	72	0.05	0.03	0.0114	0.0114	LOCAL_REARRANGEMENT:+:[40747],CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+,E2F3->E2F_transcription_factor_3,Oncogene{Bushman},chr6:20402398-20493941:+	HCC70_BREAST	0.03	0.05	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000668
HCC70_BREAST	H3F3B--BATF	1	1	H3F3B	5685	chr17:73774964:-	BATF	12456	chr14:75991427:+	ONLY_REF_SPLICE	YES	1999	144	0	0.01	0.0114	0.0114	H3F3B->H3_histone,_family_3B_(H3.3B),chr17:73772515-73781974:-,BATF->Oncogene{Bushman},basic_leucine_zipper_ATF-like_transcription_factor,chr14:75988768-76013358:+	HCC70_BREAST	0	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000668
HCC70_BREAST	KIAA0020--SMARCA2	1	1	KIAA0020	18760	chr9:2804257:-	SMARCA2	60545	chr9:2161686:+	ONLY_REF_SPLICE	YES	0	335	1	0.01	0.0114	0.0114	KIAA0020->chr9:2720469-2844241:-,SMARCA2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_2,chr9:2015342-2193624:+	HCC70_BREAST	0.01	1	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000668
HCC70_BREAST	PRRC2C--CDC73	1	1	PRRC2C	1224	chr1:171454874:+	CDC73	58238	chr1:193172925:+	ONLY_REF_SPLICE	NO	179	211	0.01	0.01	0.0114	0.0114	PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C,CDC73->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cell_division_cycle_73,chr1:193091147-193223031:+	HCC70_BREAST	0.01	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000668
HCC70_BREAST	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	74	0.25	0.03	0.0114	0.0114	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC70_BREAST	0.03	0.25	0.0228	FALSE	0	48	1	163	0	FALSE	ACH-000668
HCC70_BREAST	ZFAND1--MAP4	1	1	ZFAND1	7427	chr8:82626153:-	MAP4	23599	chr3:47969840:-	ONLY_REF_SPLICE	YES	183	292	0.01	0.01	0.0114	0.0114	ZFAND1->chr8:82613569-82645138:-,zinc_finger_AN1-type_containing_1,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	HCC70_BREAST	0.01	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000668
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--IGH@	3716	2060	RUNX1	21108	chr21:36421139:-	IGH@	143012	chr14:106312010:-	ONLY_REF_SPLICE	YES	48	2	0.99	1	51.8498	28.7434	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,IGH@->Oncogene{Bushman}	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	80.5932	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C22orf39--MTMR3	129	59	C22orf39	21765	chr22:19363154:-	MTMR3	55669	chr22:30421619:+	ONLY_REF_SPLICE	YES	75	27	0.71	0.87	1.8	0.8232	C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.87	2.6232	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS18--HTATSF1P	102	55	RPS18	1717	chr6:33240503:+	HTATSF1P	7320	chr6:33205988:+	INCL_NON_REF_SPLICE	YES	3083	9	0.05	0.95	1.4232	0.7674	LOCAL_REARRANGEMENT:+:[32320],RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18,HTATSF1P->chr6:33205576-33207467:+	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.95	2.1906	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	102	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.4232	0.3209	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.7441	TRUE	508	994	45	981	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RUNX1	87	45	PVT1	1202	chr8:128806980:+	RUNX1	46700	chr21:36437369:-	ONLY_REF_SPLICE	YES	33	0	0.8	1	1.2139	0.6279	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	1.8418	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF25--ANKRD11	74	26	TCF25	19312	chr16:89973730:+	ANKRD11	59561	chr16:89334452:-	INCL_NON_REF_SPLICE	YES	103	31	0.49	0.76	1.0325	0.3628	TCF25->chr16:89940000-89977792:+,transcription_factor_25,ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.76	1.3953	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--IGH@	6	236	RUNX1	21108	chr21:36421139:-	IGH@	143236	chr14:106311786:-	INCL_NON_REF_SPLICE	YES	48	631	0.83	0.28	0.0837	3.2929	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,IGH@->Oncogene{Bushman}	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.83	3.3766	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	56	33	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	7	0	0.93	1	0.7814	0.4605	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	1.2419	TRUE	0	5	0	45	5	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP128--GTF2A1	48	20	CEP128	13431	chr14:81362062:-	GTF2A1	45608	chr14:81682858:-	ONLY_REF_SPLICE	YES	147	96	0.32	0.41	0.6697	0.2791	{Klijn_CCL:Lymphoid=1,Lung=1},CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,GTF2A1->Oncogene{Bushman},chr14:81641796-81687721:-,general_transcription_factor_IIA_subunit_1	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.41	0.9488	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD11--RAB6A	45	3	ANKRD11	1317	chr16:89556653:-	RAB6A	40335	chr11:73441868:-	ONLY_REF_SPLICE	YES	0	75	1	0.39	0.6279	0.0419	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,RAB6A->RAB6A,_member_RAS_oncogene_family,chr11:73386683-73472182:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.6698	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	45	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6279	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6279	TRUE	519	3926	326	965	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNAZ--BMS1P20	42	11	GNAZ	3574	chr22:23438605:+	BMS1P20	16287	chr22:22673254:+	ONLY_REF_SPLICE	YES	19	43	0.74	0.55	0.586	0.1535	GNAZ->G_protein_subunit_alpha_z,chr22:23412540-23467224:+,BMS1P20->BMS1,_ribosome_biogenesis_factor_pseudogene_20,chr22:22657589-22677203:+	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.74	0.7395	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MCM3AP-AS1--PCNT	32	27	MCM3AP-AS1	5127	chr21:47656240:+	PCNT	61745	chr21:47858077:+	ONLY_REF_SPLICE	YES	27	21	0.69	0.74	0.4465	0.3767	NEIGHBORS[64732],MCM3AP-AS1->MCM3AP_antisense_RNA_1,chr21:47649131-47679304:+,PCNT->chr21:47744036-47865682:+,pericentrin	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.74	0.8232	FALSE	0	0	0	1	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTMR3--C22orf39	32	14	MTMR3	22609	chr22:30418686:+	C22orf39	54398	chr22:19349454:-	ONLY_REF_SPLICE	YES	20	83	0.7	0.36	0.4465	0.1953	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.7	0.6418	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC24--ELP4	29	13	DNAJC24	2020	chr11:31392406:+	ELP4	27061	chr11:31648657:+	ONLY_REF_SPLICE	YES	135	110	0.24	0.28	0.4046	0.1814	NEIGHBORS[77901],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.28	0.586	FALSE	0	0	0	2	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RICTOR--LIFR	27	17	RICTOR	2396	chr5:39021141:-	LIFR	50581	chr5:38530768:-	ONLY_REF_SPLICE	YES	11	3	0.8	0.94	0.3767	0.2372	RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-,LIFR->Oncogene{Bushman},chr5:38475065-38608456:-,leukemia_inhibitory_factor_receptor_alpha	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.94	0.6139	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKS1A--SLC7A8	29	7	ANKS1A	14911	chr6:35028030:+	SLC7A8	31993	chr14:23635749:-	ONLY_REF_SPLICE	YES	25	0	0.59	1	0.4046	0.0977	{Klijn_CCL:Lymphoid=1},ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+,SLC7A8->chr14:23594504-23652883:-,solute_carrier_family_7_member_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.5023	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIST1H1C--PTMA	26	2	HIST1H1C	1217	chr6:26056483:-	PTMA	6369	chr2:232573241:+	INCL_NON_REF_SPLICE	YES	2899	0	0.01	1	0.3628	0.0279	HIST1H1C->Oncogene{Bushman},chr6:26055968-26056699:-,histone_cluster_1,_H1c,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.3907	TRUE	0	0	0	3	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMI1--HIST1H2AC	18	24	BMI1	6769	chr10:22618394:+	HIST1H2AC	13394	chr6:26138282:+	INCL_NON_REF_SPLICE	YES	669	466	0.06	0.08	0.2512	0.3349	BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+,HIST1H2AC->chr6:26124373-26139344:+,histone_cluster_1,_H2ac	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.08	0.5861	TRUE	0	0	0	1	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	21	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.293	0.1256	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.4186	FALSE	499	1288	110	792	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	22	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.307	0.0419	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3489	FALSE	462	80	0	856	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	21	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.293	0.0419	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3349	FALSE	499	1288	110	792	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RUNX1	8	46	PVT1	2457	chr8:128808254:+	RUNX1	46700	chr21:36437369:-	ONLY_REF_SPLICE	YES	22	0	0.71	1	0.1116	0.6418	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.7534	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2232	0.0419	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2651	FALSE	499	1288	110	792	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHST15--CPXM2	16	1	CHST15	1222	chr10:125852985:-	CPXM2	21403	chr10:125639825:-	ONLY_REF_SPLICE	YES	24	2	0.41	0.89	0.2232	0.014	NEIGHBORS[67401],CHST15->carbohydrate_(N-acetylgalactosamine_4-sulfate_6-O)_sulfotransferase_15,chr10:125767184-125853206:-,CPXM2->carboxypeptidase_X_(M14_family),_member_2,chr10:125465723-125699783:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.89	0.2372	FALSE	0	0	0	1	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	5	41	AP003900.6	3299	chr21:11174002:+	AC011718.2	10130	chr22:20656894:-	INCL_NON_REF_SPLICE	YES	7	0	0.87	1	0.0698	0.5721	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	0.6419	TRUE	0	0	0	3	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	15	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2093	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2093	FALSE	230	198	14	283	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPP6--AC004485.3	14	3	MPP6	1326	chr7:24613212:+	AC004485.3	28053	chr7:24236648:-	ONLY_REF_SPLICE	YES	58	0	0.23	1	0.1953	0.0419	MPP6->chr7:24612887-24733812:+,membrane_palmitoylated_protein_6,AC004485.3->chr7:24236281-24295338:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.2372	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	14	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1953	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1953	TRUE	0	0	0	434	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD11--TCF25	12	6	ANKRD11	34573	chr16:89334709:-	TCF25	59182	chr16:89976999:+	INCL_NON_REF_SPLICE	YES	38	101	0.32	0.15	0.1674	0.0837	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,TCF25->chr16:89940000-89977792:+,transcription_factor_25	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.32	0.2511	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RUNX1	2	46	PVT1	2520	chr8:128808317:+	RUNX1	46700	chr21:36437369:-	ONLY_REF_SPLICE	YES	22	0	0.69	1	0.0279	0.6418	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	0.6697	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MCM3AP-AS1--PCNT	6	27	MCM3AP-AS1	5132	chr21:47656245:+	PCNT	61745	chr21:47858077:+	INCL_NON_REF_SPLICE	YES	27	21	0.55	0.61	0.0837	0.3767	NEIGHBORS[64732],MCM3AP-AS1->MCM3AP_antisense_RNA_1,chr21:47649131-47679304:+,PCNT->chr21:47744036-47865682:+,pericentrin	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.61	0.4604	FALSE	0	0	0	1	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1116	0.1814	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.293	FALSE	499	1288	110	792	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	10	3	AP003900.6	1122	chr21:11169841:+	AC011718.2	10130	chr22:20656894:-	INCL_NON_REF_SPLICE	YES	8	0	0.62	1	0.1395	0.0419	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.1814	TRUE	0	0	0	11	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	10	1	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3453	6	0	0.65	0.1395	0.014	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.65	0.1535	FALSE	43	37	8	105	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TANC1--PKP4	10	1	TANC1	2259	chr2:159857701:+	PKP4	43354	chr2:159433783:+	ONLY_REF_SPLICE	YES	4	48	0.73	0.19	0.1395	0.014	YOSHIHARA_TCGA_num_samples[BRCA:1|OV:1],{Klijn_CCL:Lung=1},TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,PKP4->chr2:159313476-159539391:+,plakophilin_4	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.73	0.1535	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD11--TCF25	7	10	ANKRD11	34757	chr16:89334525:-	TCF25	59182	chr16:89976999:+	INCL_NON_REF_SPLICE	YES	21	101	0.45	0.14	0.0977	0.1395	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,TCF25->chr16:89940000-89977792:+,transcription_factor_25	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.45	0.2372	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	9	2	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1256	0.0279	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1535	FALSE	43	37	8	105	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	8	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	36	46	0.27	0.22	0.1116	0.0698	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.27	0.1814	TRUE	267	562	48	632	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMI1--HIST1H2AC	5	15	BMI1	6655	chr10:22618280:+	HIST1H2AC	13394	chr6:26138282:+	INCL_NON_REF_SPLICE	YES	769	466	0.03	0.04	0.0698	0.2093	BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+,HIST1H2AC->chr6:26124373-26139344:+,histone_cluster_1,_H2ac	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.2791	TRUE	0	0	0	1	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLK--DNAH5	8	3	SLK	1695	chr10:105727653:+	DNAH5	107639	chr5:13701545:-	ONLY_REF_SPLICE	YES	9	0	0.55	1	0.1116	0.0419	{Klijn_CCL:Lymphoid=1},SLK->STE20_like_kinase,chr10:105726959-105788991:+,DNAH5->chr5:13690440-13944652:-,dynein_axonemal_heavy_chain_5	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.1535	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC24--ELP4	5	13	DNAJC24	5742	chr11:31417941:+	ELP4	27061	chr11:31648657:+	ONLY_REF_SPLICE	YES	146	110	0.11	0.14	0.0698	0.1814	NEIGHBORS[77901],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.14	0.2512	FALSE	0	0	0	1	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	17	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.84	1	0.0558	0.2372	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	1	0.293	FALSE	499	1288	110	792	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	7	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0977	0.0698	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1675	FALSE	416	2512	207	587	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	8	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1116	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1116	FALSE	230	193	14	283	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTMR3--C22orf39	4	14	MTMR3	23395	chr22:30419472:+	C22orf39	54398	chr22:19349454:-	ONLY_REF_SPLICE	YES	26	83	0.41	0.18	0.0558	0.1953	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.41	0.2511	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	3	16	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	7	4	0.73	0.83	0.0419	0.2232	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.83	0.2651	TRUE	0	1	0	20	1	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MCM3AP-AS1--PCNT	7	0	MCM3AP-AS1	1050	chr21:47649180:+	PCNT	61745	chr21:47858077:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0977	0	NEIGHBORS[64732],MCM3AP-AS1->MCM3AP_antisense_RNA_1,chr21:47649131-47679304:+,PCNT->chr21:47744036-47865682:+,pericentrin	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0977	FALSE	0	0	0	1	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXDC1--TAF13	7	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0977	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0977	TRUE	7	10	0	216	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	6	3	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0837	0.0419	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1256	FALSE	43	37	8	105	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKRIP1--CUX1	6	3	PRKRIP1	4162	chr7:102016769:+	CUX1	62126	chr7:101916637:+	ONLY_REF_SPLICE	YES	40	68	0.18	0.12	0.0837	0.0419	LOCAL_REARRANGEMENT:+:[77070],PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.18	0.1256	TRUE	0	0	0	3	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--IGH@	5	6	RUNX1	19385	chr21:36437233:-	IGH@	143012	chr14:106312010:-	ONLY_REF_SPLICE	YES	1	2	0.92	0.85	0.0698	0.0837	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,IGH@->Oncogene{Bushman}	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.92	0.1535	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	1	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	13867	0	0	1	0.0837	0.014	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0977	FALSE	231	217	16	283	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	4	8	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	7	4	0.63	0.75	0.0558	0.1116	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.75	0.1674	TRUE	0	1	0	24	1	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	3	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	11153	0	0	1	0.0698	0.0419	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1117	FALSE	231	217	16	283	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11609	6	0	0.5	0.0698	0.014	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.5	0.0838	FALSE	231	205	14	283	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	0	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0698	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0698	FALSE	231	217	16	283	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	0	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0698	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0698	FALSE	43	37	8	105	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1S--PTPN6	3	5	C1S	1111	chr12:7096461:+	PTPN6	20671	chr12:7060772:+	ONLY_REF_SPLICE	YES	4	16	0.67	0.33	0.0419	0.0698	LOCAL_REARRANGEMENT:+:[25872],C1S->chr12:7096351-7178336:+,complement_component_1,_s_subcomponent,PTPN6->Oncogene{Bushman},chr12:7055631-7070479:+,protein_tyrosine_phosphatase,_non-receptor_type_6	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.67	0.1117	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	4	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	8	0	0.38	1	0.0558	0.014	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.0698	FALSE	33	240	4	98	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKS1A--SLC7A8	3	4	ANKS1A	12374	chr6:35021942:+	SLC7A8	31993	chr14:23635749:-	ONLY_REF_SPLICE	YES	23	0	0.23	1	0.0419	0.0558	{Klijn_CCL:Lymphoid=1},ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+,SLC7A8->chr14:23594504-23652883:-,solute_carrier_family_7_member_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.0977	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--BMI1	4	0	IGLL5	1480	chr22:23230439:+	BMI1	10070	chr10:22615360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0558	0	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	FALSE	231	217	16	283	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	2255	chrM:12014:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	1545	0	0	1	0.0419	0.0558	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0977	FALSE	216	209	16	281	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1783	chrM:11542:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	FALSE	231	217	16	283	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	0	MT-ND5	1648	chrM:12984:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	FALSE	42	36	7	104	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	0	MT-ND5	1627	chrM:12963:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	FALSE	42	36	7	104	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOA3--MARK2	4	0	NCOA3	1163	chr20:46130763:+	MARK2	43025	chr11:63669670:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0558	0	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,MARK2->chr11:63606400-63678491:+,microtubule_affinity_regulating_kinase_2	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	TRUE	0	0	0	434	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRMT11--NKAIN2	4	0	TRMT11	1193	chr6:126307768:+	NKAIN2	24283	chr6:124979332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0558	0	TRMT11->chr6:126307576-126360422:+,tRNA_methyltransferase_11_homolog,NKAIN2->Na+/K+_transporting_ATPase_interacting_2,Oncogene{Bushman},chr6:124125286-125146803:+	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	35	47	0.15	0.11	0.0419	0.0419	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.15	0.0838	TRUE	267	562	48	632	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIATL1--RP11-307E17.8	3	3	HIATL1	4664	chr9:97200810:+	RP11-307E17.8	19630	chr9:97101118:+	ONLY_REF_SPLICE	YES	92	5	0.06	0.55	0.0419	0.0419	GTEx_FI:{Small_Intestine=[count:1=pct:1.8],Skin=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:+:[13603],HIATL1->chr9:97136833-97223324:+,RP11-307E17.8->chr9:97094758-97123230:+	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.55	0.0838	TRUE	3	6	0	6	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	3	MT-ND5	2792	chrM:14128:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0.0419	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0838	FALSE	43	37	8	105	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	12643	0	0	1	0.0419	0.014	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0559	FALSE	231	217	16	283	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	12820	1	0	0.8	0.0419	0.014	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.8	0.0559	FALSE	231	205	14	283	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1917	chrM:11676:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11352	6	0	0.4	0.0419	0.014	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.4	0.0559	FALSE	231	217	16	283	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11206	6	0	0.4	0.0419	0.014	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.4	0.0559	FALSE	231	217	16	283	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1852	34	0	0.11	0.0419	0.014	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.11	0.0559	FALSE	216	209	16	281	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	1	MT-ND5	2350	chrM:13686:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2677	34	0	0.11	0.0419	0.014	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.11	0.0559	FALSE	43	37	8	105	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1195	chrM:10954:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0419	FALSE	230	193	14	283	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	3	0	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0419	FALSE	26	124	4	93	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0419	FALSE	499	1288	110	792	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0419	FALSE	462	80	0	856	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1S--PTPN6	2	1	C1S	1111	chr12:7096461:+	PTPN6	21045	chr12:7061146:+	ONLY_REF_SPLICE	YES	4	8	0.43	0.27	0.0279	0.014	LOCAL_REARRANGEMENT:+:[25872],C1S->chr12:7096351-7178336:+,complement_component_1,_s_subcomponent,PTPN6->Oncogene{Bushman},chr12:7055631-7070479:+,protein_tyrosine_phosphatase,_non-receptor_type_6	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.43	0.0419	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C22orf39--MTMR3	1	5	C22orf39	19405	chr22:19371143:-	MTMR3	55669	chr22:30421619:+	ONLY_REF_SPLICE	YES	180	27	0.03	0.18	0.014	0.0698	C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.18	0.0838	TRUE	0	0	0	1	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	2	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0279	0.014	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.0419	FALSE	20	187	4	79	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	2	1	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0279	0.014	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0419	FALSE	0	26	0	50	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	2	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0.014	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0419	FALSE	0	24	0	62	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAH5--SORL1	2	0	DNAH5	83285	chr5:13701393:-	SORL1	93392	chr11:121358741:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	DNAH5->chr5:13690440-13944652:-,dynein_axonemal_heavy_chain_5,SORL1->Oncogene{Bushman},chr11:121322912-121504402:+,sortilin-related_receptor,_L(DLR_class)_A_repeats_containing	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	TRUE	0	0	0	11	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GATS--PILRB	2	0	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	TRUE	57	41	2	35	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GOLGB1--EAF2	2	0	GOLGB1	1124	chr3:121468479:-	EAF2	37811	chr3:121563300:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_INVERSION:-:+:[85428],GOLGB1->chr3:121382046-121468602:-,golgin_B1,EAF2->ELL_associated_factor_2,chr3:121554030-121605373:+	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFV3--SLC30A7	2	0	NDUFV3	5809	chr21:44317157:+	SLC30A7	21232	chr1:101379219:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAP1--UBE2R2	2	0	UBAP1	1236	chr9:34179238:+	UBE2R2	16187	chr9:33886879:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Muscle=[count:6=pct:2.6],Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4]},GTEx_v2:{count=2;pct=0.02%;dist=Vagina=1,Muscle_-_Skeletal=1},UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	TRUE	8	5	0	9	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MCM3AP-AS1--PCNT	1	3	MCM3AP-AS1	2311	chr21:47650441:+	PCNT	61745	chr21:47858077:+	ONLY_REF_SPLICE	YES	7	21	0.36	0.16	0.014	0.0419	NEIGHBORS[64732],MCM3AP-AS1->MCM3AP_antisense_RNA_1,chr21:47649131-47679304:+,PCNT->chr21:47744036-47865682:+,pericentrin	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.36	0.0559	FALSE	0	0	0	1	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1S--PTPN6	1	1	C1S	1111	chr12:7096461:+	PTPN6	20974	chr12:7061075:+	ONLY_REF_SPLICE	NO	4	10	0.33	0.17	0.014	0.014	LOCAL_REARRANGEMENT:+:[25872],C1S->chr12:7096351-7178336:+,complement_component_1,_s_subcomponent,PTPN6->Oncogene{Bushman},chr12:7055631-7070479:+,protein_tyrosine_phosphatase,_non-receptor_type_6	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.33	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHST15--CPXM2	1	1	CHST15	2353	chr10:125851840:-	CPXM2	21403	chr10:125639825:-	ONLY_REF_SPLICE	NO	35	2	0.05	0.5	0.014	0.014	NEIGHBORS[67401],CHST15->carbohydrate_(N-acetylgalactosamine_4-sulfate_6-O)_sulfotransferase_15,chr10:125767184-125853206:-,CPXM2->carboxypeptidase_X_(M14_family),_member_2,chr10:125465723-125699783:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.5	0.028	FALSE	0	0	0	1	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DUSP16--LOH12CR2	1	1	DUSP16	1267	chr12:12715051:-	LOH12CR2	17276	chr12:12509739:-	ONLY_REF_SPLICE	YES	33	0	0.06	1	0.014	0.014	DUSP16->chr12:12628829-12715317:-,dual_specificity_phosphatase_16,LOH12CR2->chr12:12508342-12510001:-,loss_of_heterozygosity,_12,_chromosomal_region_2_(non-protein_coding)	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIATL1--RP11-307E17.8	1	1	HIATL1	4664	chr9:97200810:+	RP11-307E17.8	20815	chr9:97121767:+	ONLY_REF_SPLICE	YES	92	7	0.02	0.22	0.014	0.014	GTEx_FI:{Small_Intestine=[count:1=pct:1.8],Skin=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:+:[13603],HIATL1->chr9:97136833-97223324:+,RP11-307E17.8->chr9:97094758-97123230:+	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.22	0.028	TRUE	0	1	0	5	1	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RHOA--QRICH1	1	1	RHOA	2179	chr3:49449253:-	QRICH1	17997	chr3:49114471:-	ONLY_REF_SPLICE	YES	1331	174	0	0.01	0.014	0.014	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,QRICH1->chr3:49067140-49131796:-,glutamine_rich_1	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.028	FALSE	0	2	0	4	0	FALSE	ACH-000889
KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP13-16H11.2--ACACA	1	1	RP13-16H11.2	2132	chr10:26957336:-	ACACA	31714	chr17:35620797:-	ONLY_REF_SPLICE	NO	19	61	0.1	0.03	0.014	0.014	RP13-16H11.2->chr10:26953135-26965088:-,ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-	KMM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.1	0.028	TRUE	0	0	0	1	0	FALSE	ACH-000889
SKMEL5_SKIN	C1orf43--SCAMP3	401	558	C1orf43	1793	chr1:154192312:-	SCAMP3	16578	chr1:155226582:-	ONLY_REF_SPLICE	YES	1802	698	0.35	0.58	4.6602	6.4848	{Klijn_CCL:Skin=1},C1orf43->chr1:154179182-154193104:-,chromosome_1_open_reading_frame_43,SCAMP3->chr1:155225770-155232221:-,secretory_carrier_membrane_protein_3	SKMEL5_SKIN	0.35	0.58	11.145	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	S100A11--RP11-423O2.7	270	14	S100A11	2209	chr1:152009389:-	RP11-423O2.7	8708	chr1:142952672:-	ONLY_REF_SPLICE	YES	68	0	0.81	1	3.1378	0.1627	S100A11->S100_calcium_binding_protein_A11,chr1:152004982-152020383:-,RP11-423O2.7->chr1:142950985-142956716:-	SKMEL5_SKIN	0.81	1	3.3005	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	UBE2Q1--VPS72	109	91	UBE2Q1	6808	chr1:154523873:-	VPS72	14881	chr1:151158426:-	ONLY_REF_SPLICE	YES	471	286	0.3	0.41	1.2667	1.0576	{Klijn_CCL:Skin=1},UBE2Q1->chr1:154521053-154531504:-,ubiquitin_conjugating_enzyme_E2_Q1,VPS72->chr1:151142463-151167797:-,vacuolar_protein_sorting_72_homolog	SKMEL5_SKIN	0.3	0.41	2.3243	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	CTTN--TRIM37	91	32	CTTN	15994	chr11:70275305:+	TRIM37	46114	chr17:57109451:-	ONLY_REF_SPLICE	YES	2376	89	0.05	0.58	1.0576	0.3719	CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin,TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37	SKMEL5_SKIN	0.05	0.58	1.4295	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	PPFIA1--SHANK2-AS2	71	29	PPFIA1	26844	chr11:70202360:+	SHANK2-AS2	45790	chr11:70493446:+	ONLY_REF_SPLICE	YES	402	1	0.2	0.99	0.8251	0.337	PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,SHANK2-AS2->SHANK2_antisense_RNA_2,chr11:70492270-70493667:+	SKMEL5_SKIN	0.2	0.99	1.1621	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	C1orf43--SCAMP3	1	257	C1orf43	1287	chr1:154192818:-	SCAMP3	16578	chr1:155226582:-	ONLY_REF_SPLICE	YES	1859	698	0.12	0.27	0.0116	2.9867	{Klijn_CCL:Skin=1},C1orf43->chr1:154179182-154193104:-,chromosome_1_open_reading_frame_43,SCAMP3->chr1:155225770-155232221:-,secretory_carrier_membrane_protein_3	SKMEL5_SKIN	0.12	0.27	2.9983	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	TIMM23B--LINC00843	55	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6392	0.3022	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKMEL5_SKIN	1	1	0.9414	TRUE	508	994	45	981	0	FALSE	ACH-000730
SKMEL5_SKIN	C1orf43--SCAMP3	7	179	C1orf43	1793	chr1:154192312:-	SCAMP3	16950	chr1:155226210:-	ONLY_REF_SPLICE	YES	1802	600	0.09	0.24	0.0814	2.0802	{Klijn_CCL:Skin=1},C1orf43->chr1:154179182-154193104:-,chromosome_1_open_reading_frame_43,SCAMP3->chr1:155225770-155232221:-,secretory_carrier_membrane_protein_3	SKMEL5_SKIN	0.09	0.24	2.1616	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	POMK--RP11-353N4.4	42	25	POMK	4467	chr8:42958973:+	RP11-353N4.4	12242	chr1:149676746:+	ONLY_REF_SPLICE	YES	21	0	0.76	1	0.4881	0.2905	POMK->chr8:42948658-42978577:+,protein-O-mannose_kinase,RP11-353N4.4->chr1:149672997-149677289:+	SKMEL5_SKIN	0.76	1	0.7786	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	MT-ND5--MT-ATP8	30	17	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	11	0	0.81	1	0.3486	0.1976	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMEL5_SKIN	0.81	1	0.5462	FALSE	43	37	8	105	0	FALSE	ACH-000730
SKMEL5_SKIN	C17orf76-AS1--MRPL21	32	1	C17orf76-AS1	1593	chr17:16342728:+	MRPL21	17931	chr11:68660923:-	ONLY_REF_SPLICE	YES	237	893	0.12	0.04	0.3719	0.0116	C17orf76-AS1->chr17:16342136-16381992:+,MRPL21->chr11:68658744-68671303:-,mitochondrial_ribosomal_protein_L21	SKMEL5_SKIN	0.04	0.12	0.3835	TRUE	0	0	0	1	0	FALSE	ACH-000730
SKMEL5_SKIN	C15orf57--CBX3	24	29	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	66	106	0.45	0.33	0.2789	0.337	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKMEL5_SKIN	0.33	0.45	0.6159	TRUE	267	562	48	632	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-TA--MT-TC	27	14	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3138	0.1627	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL5_SKIN	1	1	0.4765	FALSE	462	80	0	856	0	FALSE	ACH-000730
SKMEL5_SKIN	TIMM23--RP11-464F9.1	28	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	244	5	0.12	0.86	0.3254	0.0465	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKMEL5_SKIN	0.12	0.86	0.3719	TRUE	519	3926	326	965	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-ND5--MT-ATP8	27	5	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4534	8	0.01	0.8	0.3138	0.0581	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMEL5_SKIN	0.01	0.8	0.3719	FALSE	43	37	8	105	0	FALSE	ACH-000730
SKMEL5_SKIN	UBE2Q1--VPS72	14	56	UBE2Q1	6434	chr1:154524247:-	VPS72	14881	chr1:151158426:-	ONLY_REF_SPLICE	YES	451	286	0.13	0.2	0.1627	0.6508	{Klijn_CCL:Skin=1},UBE2Q1->chr1:154521053-154531504:-,ubiquitin_conjugating_enzyme_E2_Q1,VPS72->chr1:151142463-151167797:-,vacuolar_protein_sorting_72_homolog	SKMEL5_SKIN	0.13	0.2	0.8135	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	RP1-34H18.1--NAV3	24	13	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2789	0.1511	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SKMEL5_SKIN	1	1	0.43	TRUE	254	575	65	124	0	FALSE	ACH-000730
SKMEL5_SKIN	PLXDC1--TAF13	26	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3022	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SKMEL5_SKIN	1	1	0.3022	TRUE	7	10	0	216	0	FALSE	ACH-000730
SKMEL5_SKIN	RCC1--MRPL21	22	0	RCC1	2175	chr1:28834672:+	MRPL21	23606	chr11:68660923:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2557	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MRPL21->chr11:68658744-68671303:-,mitochondrial_ribosomal_protein_L21	SKMEL5_SKIN	1	1	0.2557	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	MT-CO2--MT-CO1	19	4	MT-CO2	1249	chrM:7834:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9	30077	0.72	0	0.2208	0.0465	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL5_SKIN	0	0.72	0.2673	FALSE	36	10	0	27	0	FALSE	ACH-000730
SKMEL5_SKIN	FSTL5--MRPL21	14	11	FSTL5	20802	chr4:162376156:-	MRPL21	32546	chr11:68660461:-	ONLY_REF_SPLICE	YES	91	721	0.22	0.03	0.1627	0.1278	{Klijn_CCL:Skin=1},FSTL5->chr4:162305049-163085187:-,follistatin_like_5,MRPL21->chr11:68658744-68671303:-,mitochondrial_ribosomal_protein_L21	SKMEL5_SKIN	0.03	0.22	0.2905	TRUE	0	0	0	1	0	FALSE	ACH-000730
SKMEL5_SKIN	C15orf57--CBX3	9	22	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	66	107	0.32	0.22	0.1046	0.2557	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKMEL5_SKIN	0.22	0.32	0.3603	TRUE	267	562	48	632	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-TA--MT-TC	9	16	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1046	0.1859	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL5_SKIN	1	1	0.2905	FALSE	462	80	0	856	0	FALSE	ACH-000730
SKMEL5_SKIN	DIXDC1--AP002884.3	12	3	DIXDC1	3694	chr11:111808283:+	AP002884.3	33023	chr11:112064197:+	ONLY_REF_SPLICE	YES	20	0	0.43	1	0.1395	0.0349	DIXDC1->DIX_domain_containing_1,chr11:111797868-111893308:+,AP002884.3->chr11:112041253-112071394:+	SKMEL5_SKIN	0.43	1	0.1744	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	MT-ND5--MT-ATP8	11	4	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7308	127	0	0.11	0.1278	0.0465	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMEL5_SKIN	0	0.11	0.1743	FALSE	43	37	8	105	0	FALSE	ACH-000730
SKMEL5_SKIN	CALM3--MT-ND4L	9	7	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	900	0	0.02	1	0.1046	0.0814	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL5_SKIN	0.02	1	0.186	FALSE	1	1	0	107	0	FALSE	ACH-000730
SKMEL5_SKIN	FTH1--ACTG1	9	3	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	7011	1	0	0.92	0.1046	0.0349	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SKMEL5_SKIN	0	0.92	0.1395	TRUE	0	0	0	64	0	FALSE	ACH-000730
SKMEL5_SKIN	UBE2Q1--VPS72	1	35	UBE2Q1	6112	chr1:154524569:-	VPS72	14881	chr1:151158426:-	ONLY_REF_SPLICE	NO	506	286	0.07	0.11	0.0116	0.4068	{Klijn_CCL:Skin=1},UBE2Q1->chr1:154521053-154531504:-,ubiquitin_conjugating_enzyme_E2_Q1,VPS72->chr1:151142463-151167797:-,vacuolar_protein_sorting_72_homolog	SKMEL5_SKIN	0.07	0.11	0.4184	TRUE	0	0	0	1	0	FALSE	ACH-000730
SKMEL5_SKIN	SCARB1--UBC	8	5	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	1529	51	0.01	0.2	0.093	0.0581	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SKMEL5_SKIN	0.01	0.2	0.1511	TRUE	55	66	6	101	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-TA--MT-TC	5	16	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0581	0.1859	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL5_SKIN	1	1	0.244	FALSE	462	80	0	856	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-ND5--MT-ATP8	4	19	MT-ND5	2872	chrM:14208:+	MT-ATP8	5906	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.88	0.0465	0.2208	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMEL5_SKIN	0.88	1	0.2673	FALSE	43	37	8	105	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-ND5--MT-ATP8	5	14	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16	127	0.54	0.13	0.0581	0.1627	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMEL5_SKIN	0.13	0.54	0.2208	FALSE	43	37	8	105	0	FALSE	ACH-000730
SKMEL5_SKIN	VGF--MT-ND4L	8	1	VGF	1176	chr7:100808699:-	MT-ND4L	7087	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2351	0	0	1	0.093	0.0116	VGF->Oncogene{Bushman},VGF_nerve_growth_factor_inducible,chr7:100805790-100808874:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL5_SKIN	0	1	0.1046	FALSE	0	0	0	4	0	FALSE	ACH-000730
SKMEL5_SKIN	S100A11--RP11-423O2.7	5	12	S100A11	2209	chr1:152009389:-	RP11-423O2.7	9746	chr1:142951557:-	ONLY_REF_SPLICE	YES	68	0	0.2	1	0.0581	0.1395	S100A11->S100_calcium_binding_protein_A11,chr1:152004982-152020383:-,RP11-423O2.7->chr1:142950985-142956716:-	SKMEL5_SKIN	0.2	1	0.1976	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	MT-ND5--MT-ATP8	4	14	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16	8	0.53	0.69	0.0465	0.1627	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMEL5_SKIN	0.53	0.69	0.2092	FALSE	43	37	8	105	0	FALSE	ACH-000730
SKMEL5_SKIN	TDRKH--AL591704.7	7	2	TDRKH	5328	chr1:151753957:-	AL591704.7	17841	chr1:153369243:-	INCL_NON_REF_SPLICE	YES	25	0	0.26	1	0.0814	0.0232	TDRKH->chr1:151742583-151763892:-,tudor_and_KH_domain_containing,AL591704.7->chr1:153369067-153369247:-	SKMEL5_SKIN	0.26	1	0.1046	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	MT-TA--MT-TC	7	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0814	0.0116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL5_SKIN	1	1	0.093	FALSE	462	80	0	856	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-CO2--MT-CO1	4	12	MT-CO2	1493	chrM:8078:+	MT-CO1	5625	chrM:6844:+	INCL_NON_REF_SPLICE	YES	8	13937	0.67	0	0.0465	0.1395	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL5_SKIN	0	0.67	0.186	FALSE	36	10	0	27	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-ND5--MT-ATP8	4	12	MT-ND5	2662	chrM:13998:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1893	8	0.01	0.67	0.0465	0.1395	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMEL5_SKIN	0.01	0.67	0.186	FALSE	43	37	8	105	0	FALSE	ACH-000730
SKMEL5_SKIN	RP11-444D3.1--SOX5	6	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	13	1	0.43	0.0697	0.0465	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL5_SKIN	0.43	1	0.1162	TRUE	477	1352	189	275	0	FALSE	ACH-000730
SKMEL5_SKIN	RP11-6N13.1--CTD-2374C24.1	6	4	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0697	0.0465	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SKMEL5_SKIN	1	1	0.1162	TRUE	5	4	0	46	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-CO2--MT-CO1	4	9	MT-CO2	1282	chrM:7867:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	10	27734	0.57	0	0.0465	0.1046	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL5_SKIN	0	0.57	0.1511	FALSE	36	10	0	27	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-CO2--MT-CO1	4	9	MT-CO2	1285	chrM:7870:+	MT-CO1	4716	chrM:5935:+	INCL_NON_REF_SPLICE	YES	10	0	0.57	1	0.0465	0.1046	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL5_SKIN	0.57	1	0.1511	FALSE	33	9	0	27	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-CO2--MT-CO1	4	9	MT-CO2	1278	chrM:7863:+	MT-CO1	5001	chrM:6220:+	INCL_NON_REF_SPLICE	YES	10	24773	0.57	0	0.0465	0.1046	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL5_SKIN	0	0.57	0.1511	FALSE	36	10	0	27	0	FALSE	ACH-000730
SKMEL5_SKIN	RP11-141M1.3--STARD13	5	5	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	17	0.77	0.37	0.0581	0.0581	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMEL5_SKIN	0.37	0.77	0.1162	FALSE	49	120	16	70	0	FALSE	ACH-000730
SKMEL5_SKIN	KANSL1--LRRC37A	6	0	KANSL1	7536	chr17:44248221:-	LRRC37A	41698	chr17:44399688:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0697	0	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	SKMEL5_SKIN	1	1	0.0697	TRUE	0	0	0	1	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-CO2--MT-CO1	5	4	MT-CO2	1222	chrM:7807:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7	30077	0.56	0	0.0581	0.0465	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL5_SKIN	0	0.56	0.1046	FALSE	36	10	0	27	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-CO2--MT-CO1	3	12	MT-CO2	1489	chrM:8074:+	MT-CO1	5621	chrM:6840:+	INCL_NON_REF_SPLICE	YES	9	14248	0.62	0	0.0349	0.1395	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL5_SKIN	0	0.62	0.1744	FALSE	36	10	0	27	0	FALSE	ACH-000730
SKMEL5_SKIN	MKL1--SLC25A17	5	1	MKL1	3549	chr22:40948110:-	SLC25A17	33932	chr22:41173377:-	ONLY_REF_SPLICE	YES	54	217	0.1	0.03	0.0581	0.0116	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,SLC25A17->chr22:41165634-41215403:-,solute_carrier_family_25_member_17	SKMEL5_SKIN	0.03	0.1	0.0697	TRUE	0	0	0	1	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-CO2--MT-CO1	4	5	MT-CO2	1286	chrM:7871:+	MT-CO1	5166	chrM:6385:+	INCL_NON_REF_SPLICE	YES	10	27599	0.47	0	0.0465	0.0581	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL5_SKIN	0	0.47	0.1046	FALSE	36	10	0	27	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-CO2--MT-CO1	5	1	MT-CO2	1240	chrM:7825:+	MT-CO1	5908	chrM:7127:+	INCL_NON_REF_SPLICE	YES	9	1560	0.4	0	0.0581	0.0116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL5_SKIN	0	0.4	0.0697	FALSE	36	10	0	27	0	FALSE	ACH-000730
SKMEL5_SKIN	RP11-141M1.3--STARD13	4	5	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	17	0.82	0.35	0.0465	0.0581	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMEL5_SKIN	0.35	0.82	0.1046	FALSE	141	264	50	91	0	FALSE	ACH-000730
SKMEL5_SKIN	TEX2--AC037445.1	5	1	TEX2	13523	chr17:62254685:-	AC037445.1	29335	chr17:61397852:-	ONLY_REF_SPLICE	YES	89	0	0.06	1	0.0581	0.0116	TEX2->chr17:62224587-62340661:-,testis_expressed_2,AC037445.1->chr17:61271291-61416414:-	SKMEL5_SKIN	0.06	1	0.0697	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0581	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMEL5_SKIN	1	1	0.0581	FALSE	351	233	23	137	0	FALSE	ACH-000730
SKMEL5_SKIN	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0581	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL5_SKIN	1	1	0.0581	FALSE	0	0	0	189	0	FALSE	ACH-000730
SKMEL5_SKIN	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0581	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKMEL5_SKIN	1	1	0.0581	TRUE	0	0	0	518	0	FALSE	ACH-000730
SKMEL5_SKIN	FTH1--ACTG1	4	3	FTH1	1258	chr11:61734875:-	ACTG1	11019	chr17:79479357:-	INCL_NON_REF_SPLICE	YES	7535	222	0	0.03	0.0465	0.0349	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SKMEL5_SKIN	0	0.03	0.0814	FALSE	0	0	0	64	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-ND5--MT-ATP8	3	7	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	3738	1355	0	0.01	0.0349	0.0814	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMEL5_SKIN	0	0.01	0.1163	FALSE	43	37	8	105	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-ND5--MT-ATP8	3	6	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	3593	0	0	1	0.0349	0.0697	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMEL5_SKIN	0	1	0.1046	FALSE	43	37	8	105	0	FALSE	ACH-000730
SKMEL5_SKIN	TUFT1--EFNA3	4	2	TUFT1	7530	chr1:151542246:+	EFNA3	20364	chr1:155057567:+	ONLY_REF_SPLICE	YES	19	7	0.24	0.46	0.0465	0.0232	TUFT1->chr1:151512781-151556059:+,tuftelin_1,EFNA3->chr1:155036224-155059283:+,chr1:155036224-155060014:+,ephrin_A3	SKMEL5_SKIN	0.24	0.46	0.0697	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	MT-CO2--MT-CO1	3	5	MT-CO2	1320	chrM:7905:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10	30077	0.44	0	0.0349	0.0581	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL5_SKIN	0	0.44	0.093	FALSE	36	10	0	27	0	FALSE	ACH-000730
SKMEL5_SKIN	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	60	1350	0.08	0	0.0465	0.0116	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKMEL5_SKIN	0	0.08	0.0581	FALSE	0	0	0	434	0	FALSE	ACH-000730
SKMEL5_SKIN	ZC3H13--CPB2	4	1	ZC3H13	2954	chr13:46619526:-	CPB2	36472	chr13:46653036:-	ONLY_REF_SPLICE	YES	274	0	0.02	1	0.0465	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_REARRANGEMENT:-:[427],ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13,CPB2->carboxypeptidase_B2,chr13:46627321-46679211:-	SKMEL5_SKIN	0.02	1	0.0581	TRUE	0	0	0	1	0	FALSE	ACH-000730
SKMEL5_SKIN	ABR--YWHAE	3	4	ABR	28482	chr17:953290:-	YWHAE	52155	chr17:1248793:-	ONLY_REF_SPLICE	YES	129	1263	0.05	0.01	0.0349	0.0465	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Lung=1},{Klijn_CCL:Skin=1},ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon	SKMEL5_SKIN	0.01	0.05	0.0814	FALSE	0	1	0	1	0	FALSE	ACH-000730
SKMEL5_SKIN	PPFIA1--NADSYN1	4	0	PPFIA1	2737	chr11:70118542:+	NADSYN1	79695	chr11:71232136:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0465	0	PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+	SKMEL5_SKIN	1	1	0.0465	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	SKMEL5_SKIN	1	1	0.0465	TRUE	22	156	2	142	0	FALSE	ACH-000730
SKMEL5_SKIN	KANSL1--LRRC37A	2	7	KANSL1	7536	chr17:44248221:-	LRRC37A	37753	chr17:44377160:+	ONLY_REF_SPLICE	YES	44	7	0.17	0.56	0.0232	0.0814	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	SKMEL5_SKIN	0.17	0.56	0.1046	TRUE	5	10	0	8	0	FALSE	ACH-000730
SKMEL5_SKIN	UBE2Q1--VPS72	1	11	UBE2Q1	6808	chr1:154523873:-	VPS72	16326	chr1:151156969:-	ONLY_REF_SPLICE	YES	471	295	0.02	0.04	0.0116	0.1278	{Klijn_CCL:Skin=1},UBE2Q1->chr1:154521053-154531504:-,ubiquitin_conjugating_enzyme_E2_Q1,VPS72->chr1:151142463-151167797:-,vacuolar_protein_sorting_72_homolog	SKMEL5_SKIN	0.02	0.04	0.1394	TRUE	0	0	0	1	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-ND5--MT-ATP8	3	1	MT-ND5	1211	chrM:12547:+	MT-ATP8	5933	chrM:8486:+	INCL_NON_REF_SPLICE	YES	7234	985	0	0	0.0349	0.0116	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMEL5_SKIN	0	0	0.0465	FALSE	41	30	6	102	0	FALSE	ACH-000730
SKMEL5_SKIN	MT-ND5--MT-ATP8	3	1	MT-ND5	1308	chrM:12644:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	NO	7834	0	0	1	0.0349	0.0116	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMEL5_SKIN	0	1	0.0465	FALSE	42	35	7	104	0	FALSE	ACH-000730
SKMEL5_SKIN	SLC39A11--LINC00511	3	1	SLC39A11	12214	chr17:70845773:-	LINC00511	45004	chr17:70400957:-	ONLY_REF_SPLICE	YES	123	267	0.03	0.01	0.0349	0.0116	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	SKMEL5_SKIN	0.01	0.03	0.0465	FALSE	0	0	0	2	0	FALSE	ACH-000730
SKMEL5_SKIN	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKMEL5_SKIN	1	1	0.0349	TRUE	0	0	0	434	0	FALSE	ACH-000730
SKMEL5_SKIN	RP11-444D3.1--SOX5	2	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	21	1	0.22	0.0232	0.0465	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL5_SKIN	0.22	1	0.0697	TRUE	160	277	29	98	0	FALSE	ACH-000730
SKMEL5_SKIN	RP11-123O10.4--GRIP1	2	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0.0232	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKMEL5_SKIN	1	1	0.0464	FALSE	416	2512	207	587	0	FALSE	ACH-000730
SKMEL5_SKIN	RP11-444D3.1--SOX5	2	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	13	1	0.24	0.0232	0.0232	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL5_SKIN	0.24	1	0.0464	TRUE	274	363	69	150	0	FALSE	ACH-000730
SKMEL5_SKIN	FN1--SREBF2	2	1	FN1	39213	chr2:216241221:-	SREBF2	66495	chr22:42280846:+	ONLY_REF_SPLICE	YES	2446	348	0	0.01	0.0232	0.0116	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2	SKMEL5_SKIN	0	0.01	0.0348	FALSE	0	0	0	1	0	FALSE	ACH-000730
SKMEL5_SKIN	SCAPER--WDR93	2	1	SCAPER	40395	chr15:76673719:-	WDR93	53083	chr15:90244938:+	ONLY_REF_SPLICE	YES	17	0	0.15	1	0.0232	0.0116	SCAPER->S-phase_cyclin_A-associated_protein_in_the_ER,chr15:76640526-77197785:-,WDR93->WD_repeat_domain_93,chr15:90234028-90286869:+	SKMEL5_SKIN	0.15	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	CPSF6--TOMM7	2	0	CPSF6	11046	chr12:69656342:+	TOMM7	21879	chr7:22857667:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,TOMM7->chr7:22852251-22862470:-,translocase_of_outer_mitochondrial_membrane_7	SKMEL5_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	31057	chr13:114202618:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	SKMEL5_SKIN	1	1	0.0232	TRUE	0	2	0	1	2	TRUE	ACH-000730
SKMEL5_SKIN	DNAJC13--DCUN1D4	2	0	DNAJC13	1235	chr3:132136604:+	DCUN1D4	61625	chr4:52714371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,DCUN1D4->chr4:52709166-52783003:+,defective_in_cullin_neddylation_1_domain_containing_4	SKMEL5_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	GTF3C5--SURF4	2	0	GTF3C5	1476	chr9:135906551:+	SURF4	16630	chr9:136234321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTF3C5->chr9:135906076-135933890:+,general_transcription_factor_IIIC_subunit_5,SURF4->chr9:136228325-136242970:-,surfeit_4	SKMEL5_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	HNRNPC--GOLGA8B	2	0	HNRNPC	11906	chr14:21698478:-	GOLGA8B	37066	chr15:34825163:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2),GOLGA8B->chr15:34817408-34880704:-,golgin_A8_family_member_B	SKMEL5_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	LINC00473--PDE10A	2	0	LINC00473	1520	chr6:166401017:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	SKMEL5_SKIN	1	1	0.0232	FALSE	6	13	0	15	0	FALSE	ACH-000730
SKMEL5_SKIN	RCC2--SFT2D2	2	0	RCC2	7482	chr1:17747210:-	SFT2D2	24524	chr1:168208369:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RCC2->Oncogene{Bushman},chr1:17733256-17766220:-,regulator_of_chromosome_condensation_2,SFT2D2->SFT2_domain_containing_2,chr1:168195176-168222263:+	SKMEL5_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	1253	chr12:24715272:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL5_SKIN	1	1	0.0232	TRUE	0	1	1	7	0	FALSE	ACH-000730
SKMEL5_SKIN	RP11-476K15.1--CTD-2015H3.2	2	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	SKMEL5_SKIN	1	1	0.0232	FALSE	0	46	0	73	0	FALSE	ACH-000730
SKMEL5_SKIN	RPS3--UMPS	2	0	RPS3	2339	chr11:75111868:+	UMPS	16749	chr3:124456415:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,UMPS->chr3:124449213-124464040:+,uridine_monophosphate_synthetase	SKMEL5_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000730
SKMEL5_SKIN	VMP1--CLTC	2	0	VMP1	1557	chr17:57785109:+	CLTC	24482	chr17:57721637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	{Klijn_CCL:Lung=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[10882],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain	SKMEL5_SKIN	1	1	0.0232	TRUE	0	0	0	3	0	TRUE	ACH-000730
SKMEL5_SKIN	RP11-6N13.1--CTD-2374C24.1	1	3	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0116	0.0349	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SKMEL5_SKIN	1	1	0.0465	TRUE	5	12	0	42	0	FALSE	ACH-000730
SKMEL5_SKIN	RP11-6N13.1--CTD-2374C24.1	1	2	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0.0232	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SKMEL5_SKIN	1	1	0.0348	TRUE	1	1	0	17	1	FALSE	ACH-000730
SKMEL5_SKIN	ATP5C1--PRPS1	1	1	ATP5C1	7637	chr10:7844817:+	PRPS1	13745	chrX:106882525:+	ONLY_REF_SPLICE	YES	436	508	0	0	0.0116	0.0116	ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+,PRPS1->Oncogene{Bushman},chrX:106871737-106894256:+,phosphoribosyl_pyrophosphate_synthetase_1	SKMEL5_SKIN	0	0	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000730
SKMEL5_SKIN	BRIP1--APPBP2	1	1	BRIP1	16760	chr17:59853762:-	APPBP2	33442	chr17:58577848:-	ONLY_REF_SPLICE	YES	53	161	0.04	0.01	0.0116	0.0116	BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-,APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-	SKMEL5_SKIN	0.01	0.04	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000730
SKMEL5_SKIN	HNRNPA2B1--TAX1BP1	1	1	HNRNPA2B1	1958	chr7:26240192:-	TAX1BP1	29924	chr7:27839584:+	ONLY_REF_SPLICE	YES	3535	735	0	0	0.0116	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	SKMEL5_SKIN	0	0	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000730
SKMEL5_SKIN	IL1RAP--CLDN1	1	1	IL1RAP	11045	chr3:190282142:+	CLDN1	34498	chr3:190030825:-	ONLY_REF_SPLICE	NO	789	215	0	0.01	0.0116	0.0116	IL1RAP->chr3:190231840-190375843:+,interleukin_1_receptor_accessory_protein,CLDN1->chr3:190023490-190040264:-,claudin_1	SKMEL5_SKIN	0	0.01	0.0232	FALSE	0	2	0	1	0	FALSE	ACH-000730
SKMEL5_SKIN	MOSPD2--PIR	1	1	MOSPD2	1318	chrX:14891880:+	PIR	32654	chrX:15425672:-	ONLY_REF_SPLICE	YES	72	607	0.03	0	0.0116	0.0116	MOSPD2->chrX:14891563-14940449:+,motile_sperm_domain_containing_2,PIR->chrX:15402921-15511687:-,pirin	SKMEL5_SKIN	0	0.03	0.0232	FALSE	1	9	0	3	1	FALSE	ACH-000730
SKMEL5_SKIN	NBR2--BRCA1	1	1	NBR2	1161	chr17:41277787:+	BRCA1	29133	chr17:41234592:-	ONLY_REF_SPLICE	YES	17	116	0.11	0.02	0.0116	0.0116	LOCAL_INVERSION:+:-:[127],NBR2->chr17:41277627-41305688:+,neighbor_of_BRCA1_gene_2_(non-protein_coding),BRCA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_1,chr17:41196312-41277500:-	SKMEL5_SKIN	0.02	0.11	0.0232	TRUE	0	0	0	2	0	FALSE	ACH-000730
SKMEL5_SKIN	PARP8--RNF144B	1	1	PARP8	3227	chr5:49963959:+	RNF144B	46010	chr6:18439915:+	ONLY_REF_SPLICE	YES	81	34	0.02	0.06	0.0116	0.0116	PARP8->chr5:49961733-50142356:+,poly(ADP-ribose)_polymerase_family_member_8,RNF144B->chr6:18368779-18469105:+,ring_finger_protein_144B	SKMEL5_SKIN	0.02	0.06	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000730
SKMEL5_SKIN	PDHX--CD44	1	1	PDHX	1987	chr11:34938362:+	CD44	37425	chr11:35236399:+	ONLY_REF_SPLICE	YES	219	916	0.01	0	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	SKMEL5_SKIN	0	0.01	0.0232	FALSE	0	1	0	9	0	FALSE	ACH-000730
SKMEL5_SKIN	PDHX--CD44	1	1	PDHX	3068	chr11:34953031:+	CD44	37425	chr11:35236399:+	ONLY_REF_SPLICE	YES	246	916	0.01	0	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	SKMEL5_SKIN	0	0.01	0.0232	FALSE	0	0	0	4	0	FALSE	ACH-000730
SKMEL5_SKIN	RIPK1--SERPINB6	1	1	RIPK1	2307	chr6:3068895:+	SERPINB6	23529	chr6:2959576:-	ONLY_REF_SPLICE	YES	60	148	0.03	0.01	0.0116	0.0116	LOCAL_INVERSION:+:-:[92135],RIPK1->chr6:3064225-3115421:+,receptor_interacting_serine/threonine_kinase_1,SERPINB6->chr6:2948393-2972090:-,serpin_family_B_member_6	SKMEL5_SKIN	0.01	0.03	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000730
SKMEL5_SKIN	RP11-1055B8.3--RACGAP1	1	1	RP11-1055B8.3	1232	chr17:79358929:-	RACGAP1	27456	chr12:50386438:-	ONLY_REF_SPLICE	YES	424	312	0	0.01	0.0116	0.0116	RP11-1055B8.3->chr17:79349801-79359160:-,RACGAP1->Rac_GTPase_activating_protein_1,chr12:50370706-50426919:-	SKMEL5_SKIN	0	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000730
SKMEL5_SKIN	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	6	1	0.25	0.0116	0.0116	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKMEL5_SKIN	0.25	1	0.0232	TRUE	465	1949	224	605	0	FALSE	ACH-000730
SKMEL5_SKIN	URB2--NUP133	1	1	URB2	2262	chr1:229763506:+	NUP133	21410	chr1:229637849:-	ONLY_REF_SPLICE	YES	35	88	0.05	0.02	0.0116	0.0116	URB2->URB2_ribosome_biogenesis_2_homolog_(S._cerevisiae),chr1:229761981-229795946:+,NUP133->Oncogene{Bushman},chr1:229577045-229644103:-,nucleoporin_133kDa	SKMEL5_SKIN	0.02	0.05	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000730
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYL1--ETS2	821	302	LYL1	1631	chr19:13213345:-	ETS2	19438	chr21:40194598:+	ONLY_REF_SPLICE	YES	796	175	0.59	0.87	7.3744	2.7126	LYL1->Oncogene{Bushman},chr19:13209847-13213975:-,lymphoblastic_leukemia_associated_hematopoiesis_regulator_1,ETS2->ETS_proto-oncogene_2,_transcription_factor,Oncogene{Bushman},chr21:40177231-40196879:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	0.87	10.087	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELAVL1--TYK2	830	158	ELAVL1	3505	chr19:8056528:-	TYK2	32501	chr19:10465285:-	ONLY_REF_SPLICE	YES	262	367	0.79	0.73	7.4552	1.4192	{Klijn_CCL:Lymphoid=1},ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-,TYK2->chr19:10461209-10491352:-,tyrosine_kinase_2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.79	8.8744	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAPPC5--ANKRD24	194	20	TRAPPC5	2288	chr19:7747208:+	ANKRD24	13058	chr19:4207239:+	ONLY_REF_SPLICE	YES	221	5	0.49	0.98	1.7425	0.1796	TRAPPC5->chr19:7745729-7747744:+,trafficking_protein_particle_complex_5,ANKRD24->ankyrin_repeat_domain_24,chr19:4183351-4224811:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.98	1.9221	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	162	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.4551	0.2695	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.7246	TRUE	508	994	45	981	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	109	1	ZNF121	1073	chr19:9695137:-	RFX2	26209	chr19:6047515:-	ONLY_REF_SPLICE	YES	1	3	0.99	0.97	0.9791	0.009	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	0.99	0.9881	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	96	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	302	9	0.25	0.92	0.8623	0.0269	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.92	0.8892	TRUE	519	3926	326	965	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNMT1--CRTC1	78	8	DNMT1	15501	chr19:10277274:-	CRTC1	48644	chr19:18860591:+	ONLY_REF_SPLICE	YES	1184	36	0.07	0.7	0.7006	0.0719	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.7	0.7725	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	46	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4132	0.0269	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4401	FALSE	462	80	0	856	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	46	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4132	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4132	TRUE	0	0	0	518	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	44	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3952	0.018	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4132	FALSE	499	1288	110	792	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	36	4	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2923	8	0.01	0.83	0.3234	0.0359	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.83	0.3593	FALSE	43	37	8	105	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAPPC5--ANKRD24	28	35	TRAPPC5	2825	chr19:7747745:+	ANKRD24	13058	chr19:4207239:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.93	0.2515	0.3144	TRAPPC5->chr19:7745729-7747744:+,trafficking_protein_particle_complex_5,ANKRD24->ankyrin_repeat_domain_24,chr19:4183351-4224811:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.5659	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	35	1	ZNF121	1073	chr19:9695137:-	RFX2	21613	chr19:6078345:-	ONLY_REF_SPLICE	YES	1	1	0.97	0.97	0.3144	0.009	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	0.97	0.3234	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-459F4.3--AC011526.1	32	11	CTC-459F4.3	1188	chr19:28284558:+	AC011526.1	17405	chr19:41985192:-	ONLY_REF_SPLICE	YES	89	0	0.33	1	0.2874	0.0988	CTC-459F4.3->chr19:28284371-28409771:+,AC011526.1->chr19:41960074-42006559:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.3862	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	32	1	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	4734	4	0.01	0.89	0.2874	0.009	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.89	0.2964	FALSE	41	30	6	102	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	28	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	45	1	0.46	0.2515	0.0898	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	1	0.3413	TRUE	458	1351	185	561	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	21	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1886	0.0988	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.2874	FALSE	499	1288	110	792	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	21	11	ZNF121	1348	chr19:9694862:-	RFX2	26209	chr19:6047515:-	ONLY_REF_SPLICE	YES	34	3	0.48	0.91	0.1886	0.0988	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.91	0.2874	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	19	15	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	28	20	0.55	0.63	0.1707	0.1347	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.63	0.3054	TRUE	267	562	48	632	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	22	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1976	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1976	TRUE	0	0	0	434	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	20	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1796	0.018	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1976	FALSE	499	1288	110	792	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	20	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.91	0.95	0.1796	0.009	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.95	0.1886	FALSE	515	4851	409	746	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	19	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1707	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1707	TRUE	1	39	0	134	39	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	17	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	215	1	0.1	0.1527	0.0539	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.2066	TRUE	465	1949	224	605	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	11	29	ZNF121	1348	chr19:9694862:-	RFX2	21613	chr19:6078345:-	ONLY_REF_SPLICE	YES	34	1	0.54	0.98	0.0988	0.2605	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.98	0.3593	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-459F4.3--AC011526.1	15	7	CTC-459F4.3	1147	chr19:28284517:+	AC011526.1	17405	chr19:41985192:-	ONLY_REF_SPLICE	YES	77	0	0.22	1	0.1347	0.0629	CTC-459F4.3->chr19:28284371-28409771:+,AC011526.1->chr19:41960074-42006559:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.1976	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	15	7	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1347	0.0629	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.1976	FALSE	43	37	8	105	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	16	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	7835	7	0	0.71	0.1437	0.009	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.71	0.1527	FALSE	230	193	14	283	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NLGN1--NAALADL2	16	1	NLGN1	11485	chr3:173525622:+	NAALADL2	42973	chr3:174814580:+	ONLY_REF_SPLICE	YES	5	0	0.77	1	0.1437	0.009	NLGN1->chr3:173114074-174004434:+,neuroligin_1,NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.1527	TRUE	0	0	0	2	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	16	0	ZNF121	1073	chr19:9695137:-	RFX2	27307	chr19:6044293:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1437	0	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	15	1	CDC37	1606	chr19:10530192:-	CLEC17A	13039	chr19:14694169:+	INCL_NON_REF_SPLICE	YES	69	0	0.19	1	0.1347	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	15	1	CDC37	1075	chr19:10530723:-	CLEC17A	13039	chr19:14694169:+	ONLY_REF_SPLICE	YES	25	0	0.39	1	0.1347	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	14	1	CDC37	1606	chr19:10530192:-	CLEC17A	14117	chr19:14698426:+	INCL_NON_REF_SPLICE	YES	69	0	0.18	1	0.1258	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.1348	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	13	4	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4241	40	0	0.3	0.1168	0.0359	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.3	0.1527	FALSE	43	37	8	105	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAPPC5--ANKRD24	4	37	TRAPPC5	2825	chr19:7747745:+	ANKRD24	12924	chr19:4207105:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0.3323	TRAPPC5->chr19:7745729-7747744:+,trafficking_protein_particle_complex_5,ANKRD24->ankyrin_repeat_domain_24,chr19:4183351-4224811:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3682	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNMT1--CRTC1	11	8	DNMT1	15507	chr19:10277268:-	CRTC1	48644	chr19:18860591:+	INCL_NON_REF_SPLICE	YES	1299	36	0.01	0.35	0.0988	0.0719	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.35	0.1707	TRUE	0	0	0	1	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAPPC5--ANKRD24	7	21	TRAPPC5	2288	chr19:7747208:+	ANKRD24	12924	chr19:4207105:+	ONLY_REF_SPLICE	YES	221	0	0.11	1	0.0629	0.1886	TRAPPC5->chr19:7745729-7747744:+,trafficking_protein_particle_complex_5,ANKRD24->ankyrin_repeat_domain_24,chr19:4183351-4224811:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.2515	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAPPC5--ANKRD24	3	35	TRAPPC5	2910	chr19:7747830:+	ANKRD24	13058	chr19:4207239:+	INCL_NON_REF_SPLICE	NO	0	5	1	0.88	0.0269	0.3144	TRAPPC5->chr19:7745729-7747744:+,trafficking_protein_particle_complex_5,ANKRD24->ankyrin_repeat_domain_24,chr19:4183351-4224811:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.3413	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	11	1	CDC37	1606	chr19:10530192:-	CLEC17A	15195	chr19:14703093:+	INCL_NON_REF_SPLICE	YES	69	0	0.15	1	0.0988	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.1078	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	11	1	CDC37	1075	chr19:10530723:-	CLEC17A	14117	chr19:14698426:+	ONLY_REF_SPLICE	YES	25	0	0.32	1	0.0988	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.1078	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-459F4.3--AC011526.1	8	12	CTC-459F4.3	5385	chr19:28289084:+	AC011526.1	17405	chr19:41985192:-	ONLY_REF_SPLICE	YES	65	0	0.24	1	0.0719	0.1078	CTC-459F4.3->chr19:28284371-28409771:+,AC011526.1->chr19:41960074-42006559:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.1797	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	10	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9180	8	0	0.62	0.0898	0.0269	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.62	0.1167	FALSE	231	205	14	283	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	10	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0898	0.0269	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1167	FALSE	462	80	0	856	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	28	MT-ND6	1302	chrM:14372:-	MT-TE	4520	chrM:14748:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0.2515	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2784	FALSE	499	1288	110	792	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	26	MT-ND6	1115	chrM:14559:-	MT-TE	4523	chrM:14745:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0.2335	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2604	FALSE	499	1288	110	792	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	9	1	CDC37	1075	chr19:10530723:-	CLEC17A	15195	chr19:14703093:+	ONLY_REF_SPLICE	YES	25	0	0.29	1	0.0808	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.0898	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ENPP3--ZNF7	9	1	ENPP3	16595	chr6:132007047:+	ZNF7	33574	chr8:146054428:+	ONLY_REF_SPLICE	YES	79	0	0.11	1	0.0808	0.009	ENPP3->chr6:131949582-132068553:+,ectonucleotide_pyrophosphatase/phosphodiesterase_3,ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0898	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF69--AP001058.3	9	1	ZNF69	1203	chr19:11998801:+	AP001058.3	10429	chr21:45626673:-	ONLY_REF_SPLICE	YES	69	0	0.13	1	0.0808	0.009	ZNF69->chr19:11998599-12025144:+,zinc_finger_protein_69,AP001058.3->chr21:45626408-45627282:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.0898	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	16	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.0449	0.1437	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1886	FALSE	499	1288	110	792	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF414--SMARCA4	7	6	ZNF414	3548	chr19:8576501:-	SMARCA4	22890	chr19:11113705:+	ONLY_REF_SPLICE	YES	48	887	0.21	0.01	0.0629	0.0539	ZNF414->chr19:8575462-8579048:-,zinc_finger_protein_414,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.21	0.1168	TRUE	0	0	0	1	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	6	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	28	23	0.35	0.39	0.0539	0.0808	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.39	0.1347	TRUE	267	562	48	632	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C21orf33--KLHL26	8	1	C21orf33	5159	chr21:45560224:+	KLHL26	15595	chr19:18775071:+	ONLY_REF_SPLICE	YES	799	26	0.01	0.26	0.0719	0.009	C21orf33->chr21:45553487-45565605:+,chromosome_21_open_reading_frame_33,KLHL26->chr19:18747775-18781309:+,kelch_like_family_member_26	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.26	0.0809	FALSE	0	0	0	1	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNB2L1--MT-CO3	8	0	GNB2L1	4969	chr5:180669214:-	MT-CO3	13345	chrM:9277:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0	GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0719	FALSE	0	0	0	4	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNB1	8	0	RCC1	2175	chr1:28834672:+	GNB1	21015	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0719	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0719	TRUE	0	10	0	7	3	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	7	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0629	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0629	TRUE	1	39	0	134	39	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	7	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0629	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0629	TRUE	1	39	0	134	39	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	6	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.0539	0.009	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0629	TRUE	347	1186	183	220	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	5	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	9100	8	0	0.56	0.0449	0.0449	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.56	0.0898	FALSE	231	217	16	283	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	6	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0539	0.009	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.0629	FALSE	407	2205	196	549	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAPPC5--ANKRD24	3	13	TRAPPC5	2288	chr19:7747208:+	ANKRD24	13105	chr19:4207286:+	INCL_NON_REF_SPLICE	YES	221	10	0.07	0.62	0.0269	0.1168	TRAPPC5->chr19:7745729-7747744:+,trafficking_protein_particle_complex_5,ANKRD24->ankyrin_repeat_domain_24,chr19:4183351-4224811:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.62	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	6	1	ZNF121	1073	chr19:9695137:-	RFX2	22847	chr19:6072158:-	ONLY_REF_SPLICE	NO	1	1	0.88	0.88	0.0539	0.009	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.88	0.0629	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0539	FALSE	499	1288	110	792	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7914	40	0	0.13	0.0449	0.009	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.13	0.0539	FALSE	230	198	14	283	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0.0449	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0808	FALSE	462	80	0	856	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP8	5	0	MT-CO3	1140	chrM:9346:+	MT-ATP8	4859	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0449	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0449	FALSE	16	100	1	11	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	4	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	9071	1512	0	0.01	0.0359	0.0359	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0718	FALSE	231	217	16	283	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	10351	0	0	1	0.0359	0.0359	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0718	FALSE	231	217	16	283	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	4	MT-ND4	1925	chrM:11684:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	YES	9457	240	0	0.03	0.0359	0.0359	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0718	FALSE	231	217	16	283	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	4	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	10417	0	0	1	0.0359	0.0359	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0718	FALSE	231	217	16	283	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	7	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0.0629	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0898	FALSE	43	37	8	105	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	6	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	9535	0	0	1	0.0269	0.0539	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0808	FALSE	231	217	16	283	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	6	MT-ND5	2667	chrM:14003:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1114	0	0.01	1	0.0269	0.0539	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0808	FALSE	43	37	8	105	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HOOK2--CTB-133G6.1	4	1	HOOK2	4300	chr19:12903138:-	CTB-133G6.1	22619	chr19:7427667:+	ONLY_REF_SPLICE	YES	1	106	0.83	0.05	0.0359	0.009	HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2,CTB-133G6.1->chr19:7413848-7448271:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.83	0.0449	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	1	MT-ND5	1408	chrM:12744:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	YES	4303	7	0	0.42	0.0359	0.009	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.42	0.0449	FALSE	42	36	7	104	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0359	0.009	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.0449	FALSE	292	1546	117	613	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0359	0.009	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.0449	FALSE	16	356	14	466	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	9629	791	0	0.01	0.0269	0.0359	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0628	FALSE	231	217	16	283	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	1453	chrM:11212:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	10747	0	0	1	0.0269	0.0359	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0628	FALSE	231	217	16	283	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	1457	chrM:11216:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	10935	55	0	0.11	0.0269	0.0359	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.11	0.0628	FALSE	231	217	16	283	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10766	40	0	0.15	0.0269	0.0359	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.15	0.0628	FALSE	231	217	16	283	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0359	FALSE	231	205	14	283	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0359	FALSE	499	1288	110	792	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0359	FALSE	462	80	0	856	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0359	TRUE	0	0	0	434	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-459F4.3--AC011526.1	1	11	CTC-459F4.3	1660	chr19:28285030:+	AC011526.1	17405	chr19:41985192:-	ONLY_REF_SPLICE	YES	91	0	0.12	1	0.009	0.0988	CTC-459F4.3->chr19:28284371-28409771:+,AC011526.1->chr19:41960074-42006559:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.1078	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	3	MT-ND4	1294	chrM:11053:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	9932	4	0	0.6	0.0269	0.0269	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.6	0.0538	FALSE	231	205	14	283	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	3	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	10297	0	0	1	0.0269	0.0269	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0538	FALSE	231	205	14	283	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PFKL--MT-ND4L	3	3	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	747	0	0.01	1	0.0269	0.0269	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0538	FALSE	0	0	0	33	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	1	11	ZNF121	1348	chr19:9694862:-	RFX2	22847	chr19:6072158:-	ONLY_REF_SPLICE	NO	34	1	0.26	0.92	0.009	0.0988	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.92	0.1078	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LPHN1--AP001597.1	3	2	LPHN1	4692	chr19:14281494:-	AP001597.1	25259	chr21:27875901:+	ONLY_REF_SPLICE	YES	19	0	0.21	1	0.0269	0.018	LPHN1->chr19:14260750-14316999:-,AP001597.1->chr21:27765954-27941571:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.0449	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP8	3	2	MT-CO3	1434	chrM:9640:+	MT-ATP8	4887	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13373	0	0	1	0.0269	0.018	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0449	FALSE	16	100	1	11	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	3	1	CDC37	1673	chr19:10530125:-	CLEC17A	13039	chr19:14694169:+	INCL_NON_REF_SPLICE	YES	104	0	0.04	1	0.0269	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	3	1	CDC37	1673	chr19:10530125:-	CLEC17A	15195	chr19:14703093:+	INCL_NON_REF_SPLICE	YES	104	0	0.04	1	0.0269	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	3	1	CDC37	1673	chr19:10530125:-	CLEC17A	14117	chr19:14698426:+	INCL_NON_REF_SPLICE	YES	104	0	0.04	1	0.0269	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-459F4.3--AC011526.1	3	1	CTC-459F4.3	1188	chr19:28284558:+	AC011526.1	20119	chr19:41962392:-	ONLY_REF_SPLICE	YES	89	5	0.04	0.44	0.0269	0.009	CTC-459F4.3->chr19:28284371-28409771:+,AC011526.1->chr19:41960074-42006559:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.44	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	3	1	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	13	1	0.24	0.0269	0.009	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.0359	FALSE	1	11	0	34	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7796	8	0	0.33	0.0269	0.009	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.33	0.0359	FALSE	230	193	14	283	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	1	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0.009	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0359	FALSE	499	1288	110	792	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BACE2--CTD-2231E14.8	3	0	BACE2	1775	chr21:42540502:+	CTD-2231E14.8	28136	chr19:16237299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	BACE2->beta-site_APP-cleaving_enzyme_2,chr21:42539728-42654445:+,CTD-2231E14.8->chr19:16234471-16250702:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CYYR1--CTB-55O6.12	3	0	CYYR1	3687	chr21:27936978:-	CTB-55O6.12	15132	chr19:14279589:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	CYYR1->chr21:27838528-27945603:-,cysteine_and_tyrosine_rich_1,CTB-55O6.12->chr19:14247991-14282079:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP8	3	0	MT-CO3	1036	chrM:9242:+	MT-ATP8	4905	chrM:8486:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0269	FALSE	16	100	1	11	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0269	FALSE	499	1288	110	792	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0269	FALSE	499	1288	110	792	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UCKL1--NOC4L	3	0	UCKL1	1157	chr20:62587613:-	NOC4L	19142	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	UCKL1->chr20:62571186-62587769:-,uridine-cytidine_kinase_1_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0269	TRUE	0	1	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WTAPP1--RUVBL1	3	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0269	TRUE	9	252	6	66	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB2--ARHGAP15	3	0	ZEB2	5479	chr2:145274845:-	ARHGAP15	58682	chr2:144313977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.08%,GTEx_FI:{Blood=[count:17=pct:9.8],Whole_Blood=[count:16=pct:12.1],Nerve=[count:6=pct:3.5],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=23,Nerve_-_Tibial=9,Spleen=4,Lung=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0269	TRUE	6	1	1	2	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	3	0	ZNF121	1073	chr19:9695137:-	RFX2	31836	chr19:6026248:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.018	0.018	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.036	FALSE	467	2173	244	435	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	2	1	CDC37	1661	chr19:10530137:-	CLEC17A	13039	chr19:14694169:+	ONLY_REF_SPLICE	YES	87	0	0.03	1	0.018	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	2	1	CDC37	1661	chr19:10530137:-	CLEC17A	15195	chr19:14703093:+	ONLY_REF_SPLICE	YES	87	0	0.03	1	0.018	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--EED	2	1	PICALM	2232	chr11:85779693:-	EED	31917	chr11:85961338:+	ONLY_REF_SPLICE	YES	777	214	0	0.01	0.018	0.009	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,EED->chr11:85955586-85989855:+,embryonic_ectoderm_development	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	1	5	ZNF121	1348	chr19:9694862:-	RFX2	27307	chr19:6044293:-	ONLY_REF_SPLICE	YES	34	29	0.15	0.17	0.009	0.0449	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.17	0.0539	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTB--FKBP8	2	0	ACTB	4493	chr7:5570155:-	FKBP8	12949	chr19:18652805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	GTEx_v2:{count=3;pct=0.03%;dist=Esophagus_-_Muscularis=2,Whole_Blood=1},ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	1	0	2	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--PGBD2	2	0	CHD2	6529	chr15:93444529:+	PGBD2	63542	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	1	0	2	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNMT1--CRTC1	2	0	DNMT1	14413	chr19:10279006:-	CRTC1	48644	chr19:18860591:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DRG1--EIF4ENIF1	2	0	DRG1	3397	chr22:31799190:+	EIF4ENIF1	28806	chr22:31846346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	NEIGHBORS_OVERLAP:+:-:[59131],DRG1->chr22:31795509-31924726:+,developmentally_regulated_GTP_binding_protein_1,EIF4ENIF1->chr22:31832963-31892094:-,eukaryotic_translation_initiation_factor_4E_nuclear_import_factor_1	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HERC1--DAPK2	2	0	HERC1	20443	chr15:64019846:-	DAPK2	106107	chr15:64204396:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:-:[73094],HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	2	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	24772	chr6:73900296:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLHDC10--UBE2H	2	0	KLHDC10	1300	chr7:129710649:+	UBE2H	26174	chr7:129519482:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	GTEx&tcga_normals:1/3694=0.03%,KLHDC10->chr7:129710350-129775560:+,kelch_domain_containing_10,UBE2H->chr7:129470572-129592789:-,ubiquitin_conjugating_enzyme_E2_H	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPP5--RNF14	2	0	MPP5	12732	chr14:67770316:+	RNF14	34522	chr5:141359688:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5,RNF14->chr5:141337893-141369856:+,ring_finger_protein_14	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFATC2--VAPB	2	0	NFATC2	2622	chr20:50158909:-	VAPB	32677	chr20:57019133:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	NFATC2->Oncogene{Bushman},chr20:50003494-50179370:-,nuclear_factor_of_activated_T-cells_2,VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNB1	2	0	RCC1	2175	chr1:28834672:+	GNB1	20571	chr1:1771121:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	10	0	7	3	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--MRPL3	2	0	RCC1	2175	chr1:28834672:+	MRPL3	27527	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	6	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAF4--CHMP1A	2	0	SCAF4	16796	chr21:33057362:-	CHMP1A	27950	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=22;pct=0.25%;dist=Small_Intestine_-_Terminal_Ileum=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Breast_-_Mammary_Tissue=1,Lung=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Brain_-_Frontal_Cortex_(BA9)=1,Uterus=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellar_Hemisphere=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Testis=1,Cells_-_Transformed_fibroblasts=1},SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	8	8	2	7	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC3A2--BZW2	2	0	SLC3A2	3261	chr11:62639141:+	BZW2	27833	chr7:16729422:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2,BZW2->basic_leucine_zipper_and_W2_domains_2,chr7:16685756-16746148:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBR4--RABEP1	2	0	UBR4	75129	chr1:19426091:-	RABEP1	103738	chr17:5241314:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4,RABEP1->Oncogene{Bushman},chr17:5185558-5289129:+,rabaptin,_RAB_GTPase_binding_effector_protein_1	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB2--ARHGAP15	2	0	ZEB2	5479	chr2:145274845:-	ARHGAP15	66126	chr2:144460988:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.08%,GTEx_FI:{Blood=[count:17=pct:9.8],Whole_Blood=[count:16=pct:12.1],Nerve=[count:6=pct:3.5],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=23,Nerve_-_Tibial=9,Spleen=4,Lung=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	15	6	0	3	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	2	0	ZNF121	1073	chr19:9695137:-	RFX2	34021	chr19:6016282:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF121--RFX2	2	0	ZNF121	1073	chr19:9695137:-	RFX2	29477	chr19:6040252:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.009	0.018	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.027	FALSE	192	492	57	212	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--CLEC17A	1	1	CDC37	1661	chr19:10530137:-	CLEC17A	14117	chr19:14698426:+	ONLY_REF_SPLICE	NO	87	0	0.02	1	0.009	0.009	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,CLEC17A->C-type_lectin_domain_family_17_member_A,chr19:14693896-14721969:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.018	TRUE	0	0	0	1	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LRRC8D--ZNF644	1	1	LRRC8D	4992	chr1:90309341:+	ZNF644	17513	chr1:91447927:-	ONLY_REF_SPLICE	YES	157	24	0.01	0.08	0.009	0.009	LRRC8D->chr1:90286573-90402170:+,leucine-rich_repeat_containing_8_family_member_D,ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.08	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MANBA--UBE2D3	1	1	MANBA	1277	chr4:103681875:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	YES	43	260	0.04	0.01	0.009	0.009	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.018	FALSE	12	9	1	12	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MOV10L1--RRP1B	1	1	MOV10L1	6176	chr22:50547273:+	RRP1B	47656	chr21:45113071:+	ONLY_REF_SPLICE	NO	1	1139	0.67	0	0.009	0.009	MOV10L1->Mov10_RISC_complex_RNA_helicase_like_1,chr22:50528308-50600119:+,RRP1B->chr21:45079429-45115958:+,ribosomal_RNA_processing_1B	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.67	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PNO1--CNRIP1	1	1	PNO1	4135	chr2:68389795:+	CNRIP1	15168	chr2:68521158:-	ONLY_REF_SPLICE	YES	79	205	0.02	0.01	0.009	0.009	PNO1->chr2:68384976-68403370:+,partner_of_NOB1_homolog,CNRIP1->cannabinoid_receptor_interacting_protein_1,chr2:68511303-68547183:-	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.009	0.009	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.018	FALSE	275	511	55	178	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSPAN3--ETFA	1	1	TSPAN3	2475	chr15:77363234:-	ETFA	17291	chr15:76588078:-	ONLY_REF_SPLICE	YES	365	215	0.01	0.01	0.009	0.009	TSPAN3->chr15:77336359-77376326:-,tetraspanin_3,ETFA->chr15:76507696-76603813:-,electron_transfer_flavoprotein_alpha_subunit	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.018	FALSE	0	0	0	2	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBL5--MED19	1	1	UBL5	1498	chr19:9939065:+	MED19	8317	chr11:57471868:-	ONLY_REF_SPLICE	NO	2108	53	0	0.04	0.009	0.009	UBL5->chr19:9938568-9940791:+,ubiquitin_like_5,MED19->chr11:57471186-57479693:-,mediator_complex_subunit_19	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.018	FALSE	0	0	0	4	0	FALSE	ACH-000369
MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB2--ARHGAP15	1	1	ZEB2	20128	chr2:145182363:-	ARHGAP15	55274	chr2:144244942:+	ONLY_REF_SPLICE	YES	134	183	0.01	0.01	0.009	0.009	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.08%,GTEx_FI:{Blood=[count:17=pct:9.8],Whole_Blood=[count:16=pct:12.1],Nerve=[count:6=pct:3.5],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=23,Nerve_-_Tibial=9,Spleen=4,Lung=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	MOLM16_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000369
SKMEL31_SKIN	OSBPL9--CCDC18	118	62	OSBPL9	14631	chr1:52214070:+	CCDC18	63153	chr1:93720028:+	ONLY_REF_SPLICE	YES	79	6	0.69	0.97	1.2752	0.67	OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18	SKMEL31_SKIN	0.69	0.97	1.9452	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	KCTD20--PIP5K1P1	104	0	KCTD20	15921	chr6:36457998:+	PIP5K1P1	20879	chr6:7987765:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1239	0	KCTD20->chr6:36410544-36458920:+,potassium_channel_tetramerization_domain_containing_20,PIP5K1P1->chr6:7986730-7988425:+,phosphatidylinositol-4-phosphate_5-kinase_type_1_pseudogene_1	SKMEL31_SKIN	1	1	1.1239	TRUE	0	6	0	1	6	TRUE	ACH-000640
SKMEL31_SKIN	TIMM23B--LINC00843	87	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9402	0.1729	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKMEL31_SKIN	1	1	1.1131	TRUE	508	994	45	981	0	FALSE	ACH-000640
SKMEL31_SKIN	TIMM23--RP11-464F9.1	39	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	123	5	0.25	0.89	0.4215	0.0324	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKMEL31_SKIN	0.25	0.89	0.4539	TRUE	519	3926	326	965	0	FALSE	ACH-000640
SKMEL31_SKIN	PLXDC1--TAF13	37	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3998	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SKMEL31_SKIN	1	1	0.3998	TRUE	7	10	0	216	0	FALSE	ACH-000640
SKMEL31_SKIN	MT-TA--MT-TC	36	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.389	0.0216	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL31_SKIN	1	1	0.4106	FALSE	462	80	0	856	0	FALSE	ACH-000640
SKMEL31_SKIN	MT-ND6--MT-TE	33	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.3566	0.0432	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL31_SKIN	0.97	1	0.3998	FALSE	499	1288	110	792	0	FALSE	ACH-000640
SKMEL31_SKIN	CUX1--ACHE	23	42	CUX1	25795	chr7:101840585:+	ACHE	60508	chr7:100491873:-	ONLY_REF_SPLICE	YES	86	1	0.43	0.98	0.2486	0.4539	{Klijn_CCL:Skin=1},CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,ACHE->acetylcholinesterase_(Cartwright_blood_group),chr7:100487615-100494594:-	SKMEL31_SKIN	0.43	0.98	0.7025	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	KANSL1--ARL17B	30	10	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	21	20	0.66	0.67	0.3242	0.1081	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SKMEL31_SKIN	0.66	0.67	0.4323	TRUE	181	1564	124	196	0	FALSE	ACH-000640
SKMEL31_SKIN	AP000525.9--LA16c-60G3.6	27	3	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	8	0	0.79	1	0.2918	0.0324	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SKMEL31_SKIN	0.79	1	0.3242	TRUE	0	42	0	133	42	FALSE	ACH-000640
SKMEL31_SKIN	MT-ND4--MT-ND4L	4	95	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0432	1.0266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL31_SKIN	0.98	1	1.0698	FALSE	344	826	44	306	0	FALSE	ACH-000640
SKMEL31_SKIN	MT-ND4--MT-ND4L	4	95	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	4	0	0.96	1	0.0432	1.0266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL31_SKIN	0.96	1	1.0698	FALSE	344	826	44	306	0	FALSE	ACH-000640
SKMEL31_SKIN	MT-ND4--MT-ND4L	3	95	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	5	0	0.95	1	0.0324	1.0266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL31_SKIN	0.95	1	1.059	FALSE	344	826	44	306	0	FALSE	ACH-000640
SKMEL31_SKIN	OSBPL9--CCDC18	12	51	OSBPL9	13601	chr1:52212429:+	CCDC18	63153	chr1:93720028:+	ONLY_REF_SPLICE	YES	110	6	0.36	0.91	0.1297	0.5511	OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18	SKMEL31_SKIN	0.36	0.91	0.6808	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	CUX1--ACHE	12	44	CUX1	25795	chr7:101840585:+	ACHE	60505	chr7:100491876:-	ONLY_REF_SPLICE	YES	86	1	0.39	0.98	0.1297	0.4755	{Klijn_CCL:Skin=1},CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,ACHE->acetylcholinesterase_(Cartwright_blood_group),chr7:100487615-100494594:-	SKMEL31_SKIN	0.39	0.98	0.6052	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	CUX1--ACHE	16	21	CUX1	24123	chr7:101838883:+	ACHE	60508	chr7:100491873:-	ONLY_REF_SPLICE	YES	104	1	0.26	0.97	0.1729	0.2269	{Klijn_CCL:Skin=1},CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,ACHE->acetylcholinesterase_(Cartwright_blood_group),chr7:100487615-100494594:-	SKMEL31_SKIN	0.26	0.97	0.3998	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	MT-ND4--MT-ND4L	6	61	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0648	0.6592	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL31_SKIN	0.97	1	0.724	FALSE	344	821	44	306	0	FALSE	ACH-000640
SKMEL31_SKIN	MT-ND6--MT-TE	17	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.1837	0.1405	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL31_SKIN	0.91	1	0.3242	FALSE	499	1288	110	792	0	FALSE	ACH-000640
SKMEL31_SKIN	RP11-444D3.1--SOX5	18	9	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	11	1	0.71	0.1945	0.0973	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL31_SKIN	0.71	1	0.2918	TRUE	477	1352	189	275	0	FALSE	ACH-000640
SKMEL31_SKIN	RP11-141M1.3--STARD13	16	14	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	10	33	0.75	0.48	0.1729	0.1513	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMEL31_SKIN	0.48	0.75	0.3242	FALSE	49	120	16	70	0	FALSE	ACH-000640
SKMEL31_SKIN	C15orf57--CBX3	14	21	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	43	43	0.45	0.45	0.1513	0.2269	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKMEL31_SKIN	0.45	0.45	0.3782	TRUE	267	562	48	632	0	FALSE	ACH-000640
SKMEL31_SKIN	CUX1--ACHE	13	21	CUX1	24123	chr7:101838883:+	ACHE	60505	chr7:100491876:-	ONLY_REF_SPLICE	YES	104	1	0.25	0.97	0.1405	0.2269	{Klijn_CCL:Skin=1},CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,ACHE->acetylcholinesterase_(Cartwright_blood_group),chr7:100487615-100494594:-	SKMEL31_SKIN	0.25	0.97	0.3674	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	MT-ND4--MT-ND4L	9	31	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	6970	0	0.01	1	0.0973	0.335	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL31_SKIN	0.01	1	0.4323	FALSE	328	800	43	304	0	FALSE	ACH-000640
SKMEL31_SKIN	MT-ND6--MT-TE	15	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1621	0.0432	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL31_SKIN	0.95	1	0.2053	FALSE	499	1288	110	792	0	FALSE	ACH-000640
SKMEL31_SKIN	RP11-141M1.3--STARD13	13	11	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	8	33	0.75	0.42	0.1405	0.1189	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMEL31_SKIN	0.42	0.75	0.2594	FALSE	141	264	50	91	0	FALSE	ACH-000640
SKMEL31_SKIN	ZNF654--HMGB2	14	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1513	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKMEL31_SKIN	1	1	0.1513	TRUE	0	0	0	518	0	FALSE	ACH-000640
SKMEL31_SKIN	C15orf57--CBX3	10	15	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	39	43	0.39	0.37	0.1081	0.1621	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKMEL31_SKIN	0.37	0.39	0.2702	TRUE	267	562	48	632	0	FALSE	ACH-000640
SKMEL31_SKIN	NR3C1--CTD-2201G3.1	11	6	NR3C1	10508	chr5:142779221:-	CTD-2201G3.1	28573	chr5:112764357:+	ONLY_REF_SPLICE	YES	22	0	0.44	1	0.1189	0.0648	NR3C1->chr5:142657496-142815077:-,nuclear_receptor_subfamily_3_group_C_member_1,CTD-2201G3.1->chr5:112658725-112772871:+	SKMEL31_SKIN	0.44	1	0.1837	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	OSBPL9--CCDC18	8	18	OSBPL9	14631	chr1:52214070:+	CCDC18	64297	chr1:93721892:+	ONLY_REF_SPLICE	YES	79	32	0.25	0.45	0.0865	0.1945	OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18	SKMEL31_SKIN	0.25	0.45	0.281	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	RP4-565E6.1--HYDIN	10	6	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1081	0.0648	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SKMEL31_SKIN	1	1	0.1729	TRUE	456	1387	91	133	0	FALSE	ACH-000640
SKMEL31_SKIN	AC024084.1--AC009784.3	11	1	AC024084.1	3174	chr7:135743253:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.1189	0.0108	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	SKMEL31_SKIN	0.92	1	0.1297	FALSE	2	5	0	14	0	FALSE	ACH-000640
SKMEL31_SKIN	PDIA4--GAPDH	11	0	PDIA4	6407	chr7:148709365:-	GAPDH	18610	chr12:6646518:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1189	0	PDIA4->chr7:148700154-148725733:-,protein_disulfide_isomerase_family_A_member_4,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	SKMEL31_SKIN	1	1	0.1189	TRUE	0	0	0	2	0	TRUE	ACH-000640
SKMEL31_SKIN	RBM22--CTD-2201G3.1	8	1	RBM22	7860	chr5:150073638:-	CTD-2201G3.1	16433	chr5:112764357:+	ONLY_REF_SPLICE	YES	30	0	0.23	1	0.0865	0.0108	RBM22->RNA_binding_motif_protein_22,chr5:150070356-150080669:-,CTD-2201G3.1->chr5:112658725-112772871:+	SKMEL31_SKIN	0.23	1	0.0973	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	CTD-2337A12.1--CAST	8	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0865	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SKMEL31_SKIN	1	1	0.0865	TRUE	347	1186	183	220	0	FALSE	ACH-000640
SKMEL31_SKIN	RP11-680G10.1--GSE1	7	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	10	1	0.47	0.0756	0.0216	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKMEL31_SKIN	0.47	1	0.0972	TRUE	465	1949	224	605	0	FALSE	ACH-000640
SKMEL31_SKIN	AC024084.1--AC009784.3	7	1	AC024084.1	3174	chr7:135743253:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	YES	0	12	1	0.4	0.0756	0.0108	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	SKMEL31_SKIN	0.4	1	0.0864	FALSE	0	2	0	6	0	FALSE	ACH-000640
SKMEL31_SKIN	MT-TA--MT-TC	7	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0756	0.0108	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL31_SKIN	1	1	0.0864	FALSE	462	80	0	856	0	FALSE	ACH-000640
SKMEL31_SKIN	AC024084.1--AC009784.3	6	1	AC024084.1	2134	chr7:135715781:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	1	1	0.88	0.88	0.0648	0.0108	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	SKMEL31_SKIN	0.88	0.88	0.0756	FALSE	1	6	0	14	0	FALSE	ACH-000640
SKMEL31_SKIN	AC024084.1--AC009784.3	6	1	AC024084.1	3174	chr7:135743253:+	AC009784.3	8568	chr7:135801819:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0648	0.0108	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	SKMEL31_SKIN	1	1	0.0756	FALSE	0	1	0	3	0	FALSE	ACH-000640
SKMEL31_SKIN	SRPK2--PUS7	5	5	SRPK2	7398	chr7:104909253:-	PUS7	46953	chr7:105099706:-	ONLY_REF_SPLICE	YES	59	46	0.14	0.18	0.054	0.054	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	SKMEL31_SKIN	0.14	0.18	0.108	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	MT-ND6--MT-TE	3	12	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0324	0.1297	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL31_SKIN	0.94	1	0.1621	FALSE	499	1288	110	792	0	FALSE	ACH-000640
SKMEL31_SKIN	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0648	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL31_SKIN	1	1	0.0648	FALSE	499	1288	110	792	0	FALSE	ACH-000640
SKMEL31_SKIN	TIMP3--GAPDH	6	0	TIMP3	5583	chr22:33255354:+	GAPDH	16479	chr12:6647336:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0648	0	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	SKMEL31_SKIN	1	1	0.0648	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	NRIP1--AF127936.7	5	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.054	0.0216	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKMEL31_SKIN	0.88	1	0.0756	FALSE	292	1546	117	613	0	FALSE	ACH-000640
SKMEL31_SKIN	RP11-254I22.1--CTD-2337A12.1	5	2	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.054	0.0216	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	SKMEL31_SKIN	1	1	0.0756	TRUE	6	15	3	35	0	FALSE	ACH-000640
SKMEL31_SKIN	OSBPL9--CCDC18	2	13	OSBPL9	13601	chr1:52212429:+	CCDC18	64297	chr1:93721892:+	ONLY_REF_SPLICE	YES	110	32	0.12	0.32	0.0216	0.1405	OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18	SKMEL31_SKIN	0.12	0.32	0.1621	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	RP11-444D3.1--SOX5	3	9	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	18	1	0.4	0.0324	0.0973	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL31_SKIN	0.4	1	0.1297	TRUE	160	277	29	98	0	FALSE	ACH-000640
SKMEL31_SKIN	SRPK2--PUS7	4	5	SRPK2	2897	chr7:105029095:-	PUS7	46953	chr7:105099706:-	ONLY_REF_SPLICE	YES	52	46	0.15	0.16	0.0432	0.054	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	SKMEL31_SKIN	0.15	0.16	0.0972	TRUE	0	2	0	2	1	TRUE	ACH-000640
SKMEL31_SKIN	RP11-96H19.1--RP11-446N19.1	5	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.054	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKMEL31_SKIN	1	1	0.054	FALSE	515	4851	409	746	0	FALSE	ACH-000640
SKMEL31_SKIN	HPN-AS1--LGI4	4	0	HPN-AS1	1076	chr19:35597133:-	LGI4	12190	chr19:35622946:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	GTEx_FI:{Nerve=[count:18=pct:10.6],Esophagus=[count:4=pct:1.0],Colon=[count:3=pct:1.6],Blood_Vessel=[count:1=pct:0.3],Prostate=[count:1=pct:1.6]},LOCAL_REARRANGEMENT:-:[18209],HPN-AS1->HPN_antisense_RNA_1,chr19:35549963-35597208:-,LGI4->chr19:35615417-35633355:-,leucine-rich_repeat_LGI_family_member_4	SKMEL31_SKIN	1	1	0.0432	TRUE	26	21	0	3	0	FALSE	ACH-000640
SKMEL31_SKIN	RP11-254I22.1--CTD-2337A12.1	4	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	SKMEL31_SKIN	1	1	0.0432	TRUE	4	2	0	28	0	FALSE	ACH-000640
SKMEL31_SKIN	RP11-444D3.1--SOX5	2	7	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	11	1	0.45	0.0216	0.0756	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL31_SKIN	0.45	1	0.0972	TRUE	274	363	69	150	0	FALSE	ACH-000640
SKMEL31_SKIN	RP11-466L17.1--RP11-90C4.1	3	3	RP11-466L17.1	2240	chr1:56080675:+	RP11-90C4.1	11159	chr1:56297937:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0324	0.0324	NEIGHBORS[88805],RP11-466L17.1->chr1:56046710-56200675:+,RP11-90C4.1->chr1:56289480-56333921:+	SKMEL31_SKIN	0.86	1	0.0648	FALSE	351	187	22	6	0	FALSE	ACH-000640
SKMEL31_SKIN	CTD-2023N9.1--CTD-2023N9.2	3	2	CTD-2023N9.1	1119	chr5:56691005:+	CTD-2023N9.2	11053	chr5:56910004:+	ONLY_REF_SPLICE	YES	11	4	0.31	0.56	0.0324	0.0216	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	SKMEL31_SKIN	0.31	0.56	0.054	FALSE	0	0	0	9	0	FALSE	ACH-000640
SKMEL31_SKIN	AC024084.1--AC009784.3	3	1	AC024084.1	2134	chr7:135715781:+	AC009784.3	8568	chr7:135801819:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0324	0.0108	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	SKMEL31_SKIN	0.8	1	0.0432	FALSE	0	0	0	1	0	FALSE	ACH-000640
SKMEL31_SKIN	AC024084.1--AC009784.3	3	1	AC024084.1	2134	chr7:135715781:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	YES	1	12	0.8	0.25	0.0324	0.0108	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	SKMEL31_SKIN	0.25	0.8	0.0432	FALSE	0	3	0	12	0	FALSE	ACH-000640
SKMEL31_SKIN	RP11-444D3.1--SOX5	1	9	RP11-444D3.1	9606	chr12:24366277:-	SOX5	13900	chr12:24102595:-	ONLY_REF_SPLICE	YES	0	6	1	0.62	0.0108	0.0973	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL31_SKIN	0.62	1	0.1081	TRUE	8	10	1	12	0	FALSE	ACH-000640
SKMEL31_SKIN	SERPINE2--ARF1	3	1	SERPINE2	17560	chr2:224842429:-	ARF1	27750	chr1:228284781:+	INCL_NON_REF_SPLICE	NO	10008	68	0	0.06	0.0324	0.0108	SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2,ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+	SKMEL31_SKIN	0	0.06	0.0432	FALSE	0	0	0	1	0	FALSE	ACH-000640
SKMEL31_SKIN	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL31_SKIN	1	1	0.0324	FALSE	344	821	44	306	0	FALSE	ACH-000640
SKMEL31_SKIN	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL31_SKIN	1	1	0.0324	FALSE	462	80	0	856	0	FALSE	ACH-000640
SKMEL31_SKIN	NR3C1--RBM22	3	0	NR3C1	10508	chr5:142779221:-	RBM22	32965	chr5:150073802:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	{Klijn_CCL:Skin=1},NR3C1->chr5:142657496-142815077:-,nuclear_receptor_subfamily_3_group_C_member_1,RBM22->RNA_binding_motif_protein_22,chr5:150070356-150080669:-	SKMEL31_SKIN	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	RP11-141M1.3--STARD13	1	8	RP11-141M1.3	5599	chr13:34098375:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	13	33	0.41	0.21	0.0108	0.0865	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMEL31_SKIN	0.21	0.41	0.0973	FALSE	9	22	2	16	0	FALSE	ACH-000640
SKMEL31_SKIN	RP11-141M1.3--STARD13	1	8	RP11-141M1.3	6791	chr13:34094095:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	12	33	0.43	0.21	0.0108	0.0865	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMEL31_SKIN	0.21	0.43	0.0973	FALSE	1	2	1	7	0	FALSE	ACH-000640
SKMEL31_SKIN	RP11-96H19.1--RP11-446N19.1	3	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKMEL31_SKIN	1	1	0.0324	FALSE	407	2205	196	549	0	FALSE	ACH-000640
SKMEL31_SKIN	CTD-2023N9.1--CTD-2023N9.2	2	3	CTD-2023N9.1	3408	chr5:56792744:+	CTD-2023N9.2	11053	chr5:56910004:+	ONLY_REF_SPLICE	YES	15	4	0.25	0.56	0.0216	0.0324	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	SKMEL31_SKIN	0.25	0.56	0.054	FALSE	0	0	0	7	0	FALSE	ACH-000640
SKMEL31_SKIN	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0216	0.0216	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKMEL31_SKIN	0.5	1	0.0432	FALSE	125	705	46	456	0	FALSE	ACH-000640
SKMEL31_SKIN	OSBPL9--CCDC18	2	2	OSBPL9	14631	chr1:52214070:+	CCDC18	65501	chr1:93724305:+	ONLY_REF_SPLICE	YES	79	83	0.05	0.05	0.0216	0.0216	OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18	SKMEL31_SKIN	0.05	0.05	0.0432	TRUE	0	0	0	1	0	FALSE	ACH-000640
SKMEL31_SKIN	RP11-141M1.3--STARD13	1	6	RP11-141M1.3	8903	chr13:34013828:-	STARD13	26750	chr13:33716510:-	ONLY_REF_SPLICE	YES	8	42	0.47	0.14	0.0108	0.0648	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMEL31_SKIN	0.14	0.47	0.0756	FALSE	1	5	1	7	0	FALSE	ACH-000640
SKMEL31_SKIN	CHCHD2--MPRIP	2	0	CHCHD2	2463	chr7:56171919:-	MPRIP	16600	chr17:17039533:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	CHCHD2->chr7:56169262-56174269:-,coiled-coil-helix-coiled-coil-helix_domain_containing_2,MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein	SKMEL31_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	FN1--SERPINE2	2	0	FN1	27876	chr2:216256355:-	SERPINE2	65227	chr2:224849667:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2	SKMEL31_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	OAZ1--FKBP8	2	0	OAZ1	1259	chr19:2269743:+	FKBP8	10086	chr19:18652805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:6=pct:4.5],Blood=[count:6=pct:3.4],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=3,Brain_-_Hypothalamus=1,Adrenal_Gland=1,Spleen=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	SKMEL31_SKIN	1	1	0.0216	TRUE	15	2	0	2	0	FALSE	ACH-000640
SKMEL31_SKIN	KANSL1--ARL17B	1	3	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	16	20	0.2	0.17	0.0108	0.0324	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SKMEL31_SKIN	0.17	0.2	0.0432	TRUE	105	90	7	93	0	FALSE	ACH-000640
SKMEL31_SKIN	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	3	11	0.57	0.27	0.0108	0.0324	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL31_SKIN	0.27	0.57	0.0432	TRUE	16	11	2	20	0	FALSE	ACH-000640
SKMEL31_SKIN	AC074363.1--B3GALT1	1	2	AC074363.1	1164	chr2:168149844:+	B3GALT1	6463	chr2:168675182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0108	0.0216	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	SKMEL31_SKIN	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000640
SKMEL31_SKIN	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	7	0	0.3	1	0.0108	0.0216	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKMEL31_SKIN	0.3	1	0.0324	FALSE	164	806	69	479	0	FALSE	ACH-000640
SKMEL31_SKIN	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	1	1	0.75	0.0108	0.0216	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKMEL31_SKIN	0.75	1	0.0324	TRUE	458	1351	185	561	0	FALSE	ACH-000640
SKMEL31_SKIN	RP4-565E6.1--HYDIN	1	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	NO	0	3	1	0.5	0.0108	0.0216	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SKMEL31_SKIN	0.5	1	0.0324	TRUE	84	87	4	41	0	FALSE	ACH-000640
SKMEL31_SKIN	CUX1--ACHE	1	1	CUX1	24123	chr7:101838883:+	ACHE	60856	chr7:100491525:-	ONLY_REF_SPLICE	YES	104	10	0.02	0.17	0.0108	0.0108	{Klijn_CCL:Skin=1},CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,ACHE->acetylcholinesterase_(Cartwright_blood_group),chr7:100487615-100494594:-	SKMEL31_SKIN	0.02	0.17	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000640
SKMEL31_SKIN	RP11-570L15.1--AC096558.1	1	1	RP11-570L15.1	2114	chr2:144350823:-	AC096558.1	10822	chr2:144108965:-	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0108	0.0108	NEIGHBORS[38078],RP11-570L15.1->chr2:144276436-144355571:-,AC096558.1->chr2:144052990-144238358:-	SKMEL31_SKIN	0.67	1	0.0216	FALSE	0	8	0	1	0	FALSE	ACH-000640
SKMEL31_SKIN	SERPINE2--ARF1	1	1	SERPINE2	1221	chr2:224903816:-	ARF1	27748	chr1:228284779:+	ONLY_REF_SPLICE	YES	6234	69	0	0.03	0.0108	0.0108	SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2,ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+	SKMEL31_SKIN	0	0.03	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000640
SKMEL31_SKIN	SERPINE2--USP10	1	1	SERPINE2	10173	chr2:224856520:-	USP10	32690	chr16:84792322:+	ONLY_REF_SPLICE	YES	11175	29	0	0.06	0.0108	0.0108	SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2,USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10	SKMEL31_SKIN	0	0.06	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000640
OSRC2_KIDNEY	TGFA--ADD2	260	78	TGFA	3064	chr2:70741991:-	ADD2	23393	chr2:70933574:-	ONLY_REF_SPLICE	YES	320	0	0.51	1	2.7368	0.821	LOCAL_REARRANGEMENT:-:[53425],TGFA->Oncogene{Bushman},chr2:70674412-70781325:-,transforming_growth_factor_alpha,ADD2->adducin_2,chr2:70834750-70995357:-	OSRC2_KIDNEY	0.51	1	3.5578	TRUE	0	0	0	1	0	TRUE	ACH-000159
OSRC2_KIDNEY	TIMM23B--LINC00843	117	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2315	0.2526	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OSRC2_KIDNEY	1	1	1.4841	TRUE	508	994	45	981	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-TA--MT-TN	111	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1684	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OSRC2_KIDNEY	1	1	1.1684	FALSE	369	2501	205	193	0	FALSE	ACH-000159
OSRC2_KIDNEY	TIMM23--RP11-464F9.1	70	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	153	5	0.32	0.94	0.7368	0.0211	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OSRC2_KIDNEY	0.32	0.94	0.7579	TRUE	519	3926	326	965	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ND6--MT-TE	67	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7052	0.0526	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OSRC2_KIDNEY	1	1	0.7578	FALSE	499	1288	110	792	0	FALSE	ACH-000159
OSRC2_KIDNEY	MTAP--SLC24A2	50	9	MTAP	7556	chr9:21818201:+	SLC24A2	25156	chr9:19622297:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.5263	0.0947	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,SLC24A2->chr9:19507450-19786926:-,solute_carrier_family_24_member_2	OSRC2_KIDNEY	0.98	1	0.621	TRUE	0	0	0	1	0	TRUE	ACH-000159
OSRC2_KIDNEY	MT-ND6--MT-TE	42	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.4421	0.1684	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OSRC2_KIDNEY	0.97	1	0.6105	FALSE	499	1288	110	792	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-TA--MT-TC	42	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4421	0.0211	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OSRC2_KIDNEY	1	1	0.4632	FALSE	462	80	0	856	0	FALSE	ACH-000159
OSRC2_KIDNEY	C15orf57--CBX3	30	17	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	52	10	0.47	0.82	0.3158	0.1789	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OSRC2_KIDNEY	0.47	0.82	0.4947	TRUE	267	562	48	632	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ND6--MT-TE	31	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3263	0.0526	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OSRC2_KIDNEY	1	1	0.3789	FALSE	499	1288	110	792	0	FALSE	ACH-000159
OSRC2_KIDNEY	HPCAL1--C2orf48	25	1	HPCAL1	5356	chr2:10537046:+	C2orf48	19658	chr2:10350437:+	ONLY_REF_SPLICE	YES	61	0	0.3	1	0.2632	0.0105	LOCAL_REARRANGEMENT:+:[91164],HPCAL1->chr2:10443015-10567743:+,hippocalcin_like_1,C2orf48->chr2:10281509-10351851:+,chromosome_2_open_reading_frame_48	OSRC2_KIDNEY	0.3	1	0.2737	TRUE	0	0	0	1	0	TRUE	ACH-000159
OSRC2_KIDNEY	MT-ATP6--MT-RNR2	24	4	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	7676	0	0	1	0.2526	0.0421	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OSRC2_KIDNEY	0	1	0.2947	FALSE	63	17	1	58	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-TA--MT-TN	9	62	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0947	0.6526	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OSRC2_KIDNEY	1	1	0.7473	FALSE	369	2501	205	193	0	FALSE	ACH-000159
OSRC2_KIDNEY	TGFA--ADD2	4	72	TGFA	3064	chr2:70741991:-	ADD2	23401	chr2:70933566:-	INCL_NON_REF_SPLICE	YES	320	0	0.19	1	0.0421	0.7579	LOCAL_REARRANGEMENT:-:[53425],TGFA->Oncogene{Bushman},chr2:70674412-70781325:-,transforming_growth_factor_alpha,ADD2->adducin_2,chr2:70834750-70995357:-	OSRC2_KIDNEY	0.19	1	0.8	TRUE	0	0	0	1	0	TRUE	ACH-000159
OSRC2_KIDNEY	MT-TA--MT-TN	15	20	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1579	0.2105	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OSRC2_KIDNEY	1	1	0.3684	FALSE	369	2501	205	193	0	FALSE	ACH-000159
OSRC2_KIDNEY	AP003900.6--AC011718.2	17	3	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1789	0.0316	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	OSRC2_KIDNEY	0.95	1	0.2105	TRUE	0	5	0	45	5	FALSE	ACH-000159
OSRC2_KIDNEY	MT-TA--MT-TN	9	35	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0947	0.3684	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OSRC2_KIDNEY	1	1	0.4631	FALSE	369	2501	205	193	0	FALSE	ACH-000159
OSRC2_KIDNEY	C15orf57--CBX3	15	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	52	11	0.31	0.68	0.1579	0.0842	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OSRC2_KIDNEY	0.31	0.68	0.2421	TRUE	267	562	48	632	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-TA--MT-TN	10	18	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1053	0.1895	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OSRC2_KIDNEY	1	1	0.2948	FALSE	369	2501	205	193	0	FALSE	ACH-000159
OSRC2_KIDNEY	NRIP1--AF127936.7	14	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.54	1	0.1474	0.0105	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OSRC2_KIDNEY	0.54	1	0.1579	FALSE	125	705	46	456	0	FALSE	ACH-000159
OSRC2_KIDNEY	NRIP1--AF127936.7	14	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1474	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OSRC2_KIDNEY	1	1	0.1474	FALSE	292	1546	117	613	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-TA--MT-TN	4	38	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0.4	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OSRC2_KIDNEY	1	1	0.4421	FALSE	369	2501	205	193	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-TA--MT-TN	13	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1368	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OSRC2_KIDNEY	1	1	0.1368	FALSE	369	2501	205	193	0	FALSE	ACH-000159
OSRC2_KIDNEY	TAGLN2--MT-ND5	12	0	TAGLN2	6046	chr1:159888579:-	MT-ND5	10456	chrM:13064:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1263	0	TAGLN2->chr1:159887897-159895522:-,transgelin_2,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	OSRC2_KIDNEY	1	1	0.1263	FALSE	0	0	0	9	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-TA--MT-TN	3	32	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.3368	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OSRC2_KIDNEY	1	1	0.3684	FALSE	369	2501	205	193	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ND6--MT-TE	5	20	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0.2105	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OSRC2_KIDNEY	1	1	0.2631	FALSE	499	1288	110	792	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ND6--MT-TE	10	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1053	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OSRC2_KIDNEY	1	1	0.1053	FALSE	499	1288	110	792	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-TA--MT-TN	10	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1053	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OSRC2_KIDNEY	1	1	0.1053	FALSE	369	2501	205	193	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-TA--MT-TN	10	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1053	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OSRC2_KIDNEY	1	1	0.1053	FALSE	369	2501	205	193	0	FALSE	ACH-000159
OSRC2_KIDNEY	SERPINE1--MT-ND4	10	0	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1053	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	OSRC2_KIDNEY	1	1	0.1053	FALSE	1	0	0	29	0	FALSE	ACH-000159
OSRC2_KIDNEY	SHISA9--CTD-2135D7.2	10	0	SHISA9	4767	chr16:13003719:+	CTD-2135D7.2	22825	chr16:14027076:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1053	0	SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,CTD-2135D7.2->chr16:14024534-14029492:-	OSRC2_KIDNEY	1	1	0.1053	TRUE	0	1	0	2	1	TRUE	ACH-000159
OSRC2_KIDNEY	MT-ND6--MT-TE	3	27	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0316	0.2842	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OSRC2_KIDNEY	0.94	1	0.3158	FALSE	499	1288	110	792	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ND6--MT-TE	3	27	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0316	0.2842	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OSRC2_KIDNEY	0.94	1	0.3158	FALSE	499	1288	110	792	0	FALSE	ACH-000159
OSRC2_KIDNEY	CTD-2337A12.1--CAST	9	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	32	1	0.26	0.0947	0.0211	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	OSRC2_KIDNEY	0.26	1	0.1158	TRUE	347	1186	183	220	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ATP6--MT-CO1	9	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0947	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OSRC2_KIDNEY	1	1	0.0947	FALSE	183	104	9	328	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ATP6--MT-RNR2	8	4	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	7416	6464	0	0	0.0842	0.0421	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OSRC2_KIDNEY	0	0	0.1263	FALSE	63	17	1	58	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ATP6--MT-RNR2	8	3	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	7416	6490	0	0	0.0842	0.0316	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OSRC2_KIDNEY	0	0	0.1158	FALSE	63	17	1	58	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ND6--MT-TE	4	19	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0421	0.2	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OSRC2_KIDNEY	0.92	1	0.2421	FALSE	499	1288	110	792	0	FALSE	ACH-000159
OSRC2_KIDNEY	PKM--SERPINE1	8	2	PKM	19656	chr15:72491974:-	SERPINE1	23331	chr7:100770440:+	INCL_NON_REF_SPLICE	YES	2285	0	0	1	0.0842	0.0211	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	OSRC2_KIDNEY	0	1	0.1053	TRUE	0	0	0	4	0	FALSE	ACH-000159
OSRC2_KIDNEY	CALM3--MT-ATP8	8	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OSRC2_KIDNEY	1	1	0.0842	FALSE	12	0	0	26	0	FALSE	ACH-000159
OSRC2_KIDNEY	RP11-96H19.1--RP11-446N19.1	8	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0842	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OSRC2_KIDNEY	1	1	0.0842	FALSE	515	4851	409	746	0	FALSE	ACH-000159
OSRC2_KIDNEY	SHISA9--CTD-2135D7.2	8	0	SHISA9	4771	chr16:13003723:+	CTD-2135D7.2	22809	chr16:14027092:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0	SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,CTD-2135D7.2->chr16:14024534-14029492:-	OSRC2_KIDNEY	1	1	0.0842	TRUE	0	1	0	2	1	TRUE	ACH-000159
OSRC2_KIDNEY	TGFA--ADD2	3	19	TGFA	1466	chr2:70780860:-	ADD2	23393	chr2:70933574:-	ONLY_REF_SPLICE	NO	65	0	0.25	1	0.0316	0.2	LOCAL_REARRANGEMENT:-:[53425],TGFA->Oncogene{Bushman},chr2:70674412-70781325:-,transforming_growth_factor_alpha,ADD2->adducin_2,chr2:70834750-70995357:-	OSRC2_KIDNEY	0.25	1	0.2316	TRUE	0	0	0	1	0	TRUE	ACH-000159
OSRC2_KIDNEY	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0737	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	OSRC2_KIDNEY	1	1	0.0737	TRUE	1	39	0	134	39	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0737	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OSRC2_KIDNEY	1	1	0.0737	FALSE	499	1288	110	792	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-TA--MT-TN	7	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0737	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OSRC2_KIDNEY	1	1	0.0737	FALSE	369	2501	205	193	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ATP6--MT-RNR2	6	2	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	NO	6454	0	0	1	0.0632	0.0211	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OSRC2_KIDNEY	0	1	0.0843	FALSE	63	17	1	58	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ATP6--MT-CO1	5	4	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	1276	13154	0.01	0	0.0526	0.0421	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OSRC2_KIDNEY	0	0.01	0.0947	FALSE	183	104	9	328	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ATP6--MT-CO1	6	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OSRC2_KIDNEY	1	1	0.0632	FALSE	183	104	9	328	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ATP6--MT-RNR2	5	4	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	7676	6612	0	0	0.0526	0.0421	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OSRC2_KIDNEY	0	0	0.0947	FALSE	63	17	1	58	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ND6--MT-TE	6	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OSRC2_KIDNEY	1	1	0.0632	FALSE	499	1288	110	792	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OSRC2_KIDNEY	1	1	0.0632	FALSE	462	80	0	856	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-TA--MT-TC	5	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0.0211	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OSRC2_KIDNEY	1	1	0.0737	FALSE	462	80	0	856	0	FALSE	ACH-000159
OSRC2_KIDNEY	PKM--SERPINE1	5	1	PKM	19641	chr15:72491989:-	SERPINE1	23317	chr7:100770426:+	INCL_NON_REF_SPLICE	YES	2237	0	0	1	0.0526	0.0105	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	OSRC2_KIDNEY	0	1	0.0631	FALSE	0	0	0	4	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ATP6--MT-RNR2	4	4	MT-ATP6	1303	chrM:8829:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	10424	0	0	1	0.0421	0.0421	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OSRC2_KIDNEY	0	1	0.0842	FALSE	63	17	1	58	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ND6--MT-TE	3	8	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0316	0.0842	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OSRC2_KIDNEY	0.85	1	0.1158	FALSE	499	1288	110	792	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OSRC2_KIDNEY	1	1	0.0526	FALSE	499	1288	110	792	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-TA--MT-TN	5	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OSRC2_KIDNEY	1	1	0.0526	FALSE	369	2501	205	193	0	FALSE	ACH-000159
OSRC2_KIDNEY	FRMD4A--FAM107B	4	2	FRMD4A	4125	chr10:14372057:-	FAM107B	61917	chr10:14572514:-	ONLY_REF_SPLICE	YES	37	17	0.14	0.26	0.0421	0.0211	LOCAL_REARRANGEMENT:-:[56415],FRMD4A->FERM_domain_containing_4A,chr10:13685706-14504141:-,FAM107B->chr10:14560556-14816896:-,family_with_sequence_similarity_107_member_B	OSRC2_KIDNEY	0.14	0.26	0.0632	TRUE	0	1	0	3	1	TRUE	ACH-000159
OSRC2_KIDNEY	SERPINE1--MT-ND4	4	1	SERPINE1	4767	chr7:100775260:+	MT-ND4	14110	chrM:11239:+	INCL_NON_REF_SPLICE	YES	3487	8781	0	0	0.0421	0.0105	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	OSRC2_KIDNEY	0	0	0.0526	FALSE	1	0	0	29	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ATP6--MT-CO1	4	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OSRC2_KIDNEY	1	1	0.0421	FALSE	183	104	9	328	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ND6--MT-TE	4	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OSRC2_KIDNEY	1	1	0.0421	FALSE	499	1288	110	792	0	FALSE	ACH-000159
OSRC2_KIDNEY	RP11-386G11.10--MT-ATP8	4	0	RP11-386G11.10	1230	chr12:49521794:+	MT-ATP8	8067	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	RP11-386G11.10->chr12:49521565-49541652:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OSRC2_KIDNEY	1	1	0.0421	FALSE	0	1	0	1	0	FALSE	ACH-000159
OSRC2_KIDNEY	RP11-96H19.1--RP11-446N19.1	4	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0421	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OSRC2_KIDNEY	1	1	0.0421	FALSE	407	2205	196	549	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	7416	6464	0	0	0.0316	0.0316	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OSRC2_KIDNEY	0	0	0.0632	FALSE	63	17	1	58	0	FALSE	ACH-000159
OSRC2_KIDNEY	JUND--ELL	3	2	JUND	2167	chr19:18391266:-	ELL	16813	chr19:18557624:-	ONLY_REF_SPLICE	YES	6	12	0.45	0.29	0.0316	0.0211	JUND->JunD_proto-oncogene,_AP-1_transcription_factor_subunit,Oncogene{Bushman},chr19:18390563-18392432:-,ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II	OSRC2_KIDNEY	0.29	0.45	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000159
OSRC2_KIDNEY	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	6598	6670	0	0	0.0316	0.0211	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OSRC2_KIDNEY	0	0	0.0527	FALSE	63	17	1	58	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	5905	0	0	1	0.0316	0.0211	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OSRC2_KIDNEY	0	1	0.0527	FALSE	63	17	1	58	0	FALSE	ACH-000159
OSRC2_KIDNEY	SERPINE1--MT-ND4	3	2	SERPINE1	4787	chr7:100775280:+	MT-ND4	14131	chrM:11260:+	INCL_NON_REF_SPLICE	YES	3230	8792	0	0	0.0316	0.0211	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	OSRC2_KIDNEY	0	0	0.0527	FALSE	1	0	0	29	0	FALSE	ACH-000159
OSRC2_KIDNEY	NRIP1--AF127936.7	3	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0316	0.0105	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OSRC2_KIDNEY	0.19	1	0.0421	FALSE	164	806	69	479	0	FALSE	ACH-000159
OSRC2_KIDNEY	TGM2--MT-CO3	3	1	TGM2	18765	chr20:36758461:-	MT-CO3	23434	chrM:9277:+	INCL_NON_REF_SPLICE	YES	996	0	0	1	0.0316	0.0105	TGM2->chr20:36756863-36794980:-,transglutaminase_2,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OSRC2_KIDNEY	0	1	0.0421	FALSE	0	0	0	2	0	FALSE	ACH-000159
OSRC2_KIDNEY	HSPBP1--GRK5	3	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	OSRC2_KIDNEY	1	1	0.0316	TRUE	1	39	0	134	39	FALSE	ACH-000159
OSRC2_KIDNEY	HSPBP1--GRK5	3	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	OSRC2_KIDNEY	1	1	0.0316	TRUE	1	39	0	134	39	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1114	chrM:8640:+	MT-CO1	4973	chrM:6195:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OSRC2_KIDNEY	1	1	0.0316	FALSE	183	103	9	328	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OSRC2_KIDNEY	1	1	0.0316	FALSE	499	1288	110	792	0	FALSE	ACH-000159
OSRC2_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OSRC2_KIDNEY	1	1	0.0316	FALSE	499	1288	110	792	0	FALSE	ACH-000159
OSRC2_KIDNEY	PKM--SERPINE1	3	0	PKM	11638	chr15:72501030:-	SERPINE1	31278	chr7:100780935:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	OSRC2_KIDNEY	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000159
OSRC2_KIDNEY	RP11-254I22.1--CTD-2337A12.1	3	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	OSRC2_KIDNEY	1	1	0.0316	TRUE	4	2	0	28	0	FALSE	ACH-000159
OSRC2_KIDNEY	RP11-386G11.10--MT-ATP8	3	0	RP11-386G11.10	1193	chr12:49521757:+	MT-ATP8	8067	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	RP11-386G11.10->chr12:49521565-49541652:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OSRC2_KIDNEY	1	1	0.0316	FALSE	0	1	0	1	0	FALSE	ACH-000159
OSRC2_KIDNEY	RP11-254I22.1--CTD-2337A12.1	2	2	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0211	0.0211	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	OSRC2_KIDNEY	0.8	1	0.0422	TRUE	6	15	3	35	0	FALSE	ACH-000159
OSRC2_KIDNEY	RP11-254I22.1--CTD-2337A12.1	2	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0211	0.0105	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	OSRC2_KIDNEY	0.75	1	0.0316	TRUE	0	7	2	11	5	FALSE	ACH-000159
OSRC2_KIDNEY	ANKRD11--TCF25	2	0	ANKRD11	4629	chr16:89484692:-	TCF25	41676	chr16:89949759:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,TCF25->chr16:89940000-89977792:+,transcription_factor_25	OSRC2_KIDNEY	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000159
OSRC2_KIDNEY	AP003900.6--AC011718.2	2	0	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	OSRC2_KIDNEY	1	1	0.0211	TRUE	0	1	0	24	1	FALSE	ACH-000159
OSRC2_KIDNEY	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	OSRC2_KIDNEY	1	1	0.0211	TRUE	0	2	1	13	0	FALSE	ACH-000159
OSRC2_KIDNEY	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OSRC2_KIDNEY	1	1	0.0211	FALSE	275	511	55	178	0	FALSE	ACH-000159
OSRC2_KIDNEY	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OSRC2_KIDNEY	1	1	0.0211	TRUE	5	8	0	33	0	FALSE	ACH-000159
OSRC2_KIDNEY	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OSRC2_KIDNEY	1	1	0.0211	TRUE	62	24	1	171	0	FALSE	ACH-000159
OSRC2_KIDNEY	HIF1A--MARK3	1	1	HIF1A	1327	chr14:62162557:+	MARK3	44857	chr14:103958114:+	ONLY_REF_SPLICE	YES	45	42	0.04	0.05	0.0105	0.0105	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	OSRC2_KIDNEY	0.04	0.05	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000159
OSRC2_KIDNEY	HIF1A-AS2--HIF1A	1	1	HIF1A-AS2	1213	chr14:62217603:-	HIF1A	11316	chr14:62188227:+	ONLY_REF_SPLICE	NO	2	46	0.5	0.04	0.0105	0.0105	NEIGHBORS_OVERLAP:-:+:[32700],HIF1A-AS2->HIF1A_antisense_RNA_2,chr14:62182276-62217815:-,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	OSRC2_KIDNEY	0.04	0.5	0.021	FALSE	0	1	0	3	0	FALSE	ACH-000159
OSRC2_KIDNEY	RAD51--RP11-169D4.2	1	1	RAD51	7249	chr15:41001314:+	RP11-169D4.2	17196	chr11:72298845:+	ONLY_REF_SPLICE	YES	41	0	0.05	1	0.0105	0.0105	RAD51->ArcherDX_panel,FoundationOne_panel,RAD51_recombinase,chr15:40986972-41024354:+,RP11-169D4.2->chr11:72295616-72299023:+	OSRC2_KIDNEY	0.05	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000159
OSRC2_KIDNEY	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	2	15	0.5	0.12	0.0105	0.0105	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OSRC2_KIDNEY	0.12	0.5	0.021	FALSE	16	356	14	466	0	FALSE	ACH-000159
OSRC2_KIDNEY	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0105	0.0105	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OSRC2_KIDNEY	1	1	0.021	FALSE	467	2173	244	435	0	FALSE	ACH-000159
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	93	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3508	0.3777	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.7285	TRUE	508	994	45	981	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	95	6	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	5	0	0.95	1	1.3799	0.0872	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	1.4671	TRUE	0	42	0	133	42	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL589743.1--RP11-536C10.17	93	6	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	7	0	0.93	1	1.3508	0.0872	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	1.438	TRUE	0	33	0	45	33	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	57	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	163	1	0.27	0.98	0.8279	0.0291	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.98	0.857	TRUE	519	3926	326	965	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	40	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.581	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.581	TRUE	0	0	0	518	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTR10--KIAA0586	30	25	ACTR10	2288	chr14:58669645:+	KIAA0586	58331	chr14:59006789:+	ONLY_REF_SPLICE	YES	74	20	0.43	0.73	0.4358	0.3631	ACTR10->actin-related_protein_10_homolog,chr14:58666798-58701750:+,KIAA0586->KIAA0586,chr14:58894103-59015216:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.73	0.7989	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	28	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4067	0.0872	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4939	FALSE	416	2512	207	587	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	28	1	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	764	1	0.04	0.4067	0.0145	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.4212	FALSE	101	855	57	72	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTR10--KIAA0586	20	20	ACTR10	2288	chr14:58669645:+	KIAA0586	60482	chr14:59014499:+	ONLY_REF_SPLICE	YES	74	24	0.35	0.62	0.2905	0.2905	ACTR10->actin-related_protein_10_homolog,chr14:58666798-58701750:+,KIAA0586->KIAA0586,chr14:58894103-59015216:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.62	0.581	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	21	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.305	0.0291	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3341	FALSE	462	80	0	856	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAF4--TIAM1	17	9	SCAF4	16796	chr21:33057362:-	TIAM1	47725	chr21:32525452:-	ONLY_REF_SPLICE	YES	72	11	0.27	0.7	0.2469	0.1307	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.7	0.3776	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV8-4--TRAC	2	65	TRAV8-4	1174	chr14:22362786:+	TRAC	4599	chr14:23016447:+	ONLY_REF_SPLICE	YES	844	0	0.07	1	0.0291	0.9441	HGNC_GENEFAM,TRAV8-4->T_cell_receptor_alpha_variable_8-4,chr14:22362613-22363210:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.9732	TRUE	1	0	0	2	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MBOAT7--FXYD5	17	4	MBOAT7	8425	chr19:54682482:-	FXYD5	19505	chr19:35651612:+	ONLY_REF_SPLICE	YES	77	212	0.21	0.09	0.2469	0.0581	MBOAT7->chr19:54677107-54693733:-,membrane_bound_O-acyltransferase_domain_containing_7,FXYD5->FXYD_domain_containing_ion_transport_regulator_5,Oncogene{Bushman},chr19:35645633-35660786:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.21	0.305	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	17	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2469	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2469	TRUE	46	1352	75	139	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	9	9	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	24	0	0.43	1	0.1307	0.1307	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.2614	TRUE	0	8	0	10	8	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL589743.1--RP11-536C10.17	9	8	AL589743.1	9393	chr14:19680685:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	196	0	0.08	1	0.1307	0.1162	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.2469	TRUE	0	8	0	6	8	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-565E6.1--HYDIN	10	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.1453	0.0145	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1598	TRUE	456	1387	91	133	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	10	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1453	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1453	TRUE	0	0	0	100	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00977--CCDC26	10	0	LINC00977	1074	chr8:130253423:-	CCDC26	10659	chr8:130411930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1453	0	LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1453	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	7	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	8	0.79	0.58	0.1017	0.0581	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	0.79	0.1598	FALSE	16	356	14	466	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	7	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1017	0.0145	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1162	FALSE	515	4851	409	746	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	5	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0726	0.0726	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1452	TRUE	477	1352	189	275	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	6	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0872	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0872	TRUE	0	5	0	18	5	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL589743.1--RP11-536C10.17	4	7	AL589743.1	3600	chr14:19654004:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	220	0	0.05	1	0.0581	0.1017	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.1598	TRUE	0	1	0	2	1	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	4	7	AP000525.9	3590	chr22:16189032:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	172	0	0.06	1	0.0581	0.1017	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.1598	TRUE	0	0	0	3	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	5	1	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.86	0.0726	0.0145	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0871	TRUE	0	1	0	84	1	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	4	3	AC104820.2	8902	chr2:182127704:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	13	483	0.35	0.01	0.0581	0.0436	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.35	0.1017	FALSE	0	0	0	11	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	4	2	AC104820.2	6553	chr2:182091262:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	5	410	0.55	0.01	0.0581	0.0291	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.55	0.0872	FALSE	0	0	0	11	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	4	2	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	NO	5	483	0.55	0.01	0.0581	0.0291	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.55	0.0872	FALSE	0	1	0	18	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRCA2--PDS5B	4	2	BRCA2	18217	chr13:32921033:+	PDS5B	63959	chr13:33306238:+	ONLY_REF_SPLICE	YES	20	30	0.23	0.17	0.0581	0.0291	BRCA2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_2,chr13:32889611-32973805:+,PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.23	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC146--PTPN12	4	2	CCDC146	4759	chr7:76871217:+	PTPN12	30577	chr7:77200395:+	ONLY_REF_SPLICE	YES	4	1	0.6	0.86	0.0581	0.0291	CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146,PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.86	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--LRRC37A	4	1	KANSL1	7536	chr17:44248221:-	LRRC37A	37753	chr17:44377160:+	ONLY_REF_SPLICE	YES	63	11	0.07	0.31	0.0581	0.0145	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.31	0.0726	TRUE	5	10	0	8	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	4	1	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	734	1	0.01	0.0581	0.0145	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0726	FALSE	101	855	57	72	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0581	0.0145	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0726	FALSE	292	1546	117	613	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--LRRC37A	4	0	KANSL1	8599	chr17:44230270:-	LRRC37A	41698	chr17:44399688:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0581	0	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0581	TRUE	2	2	0	6	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	3	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	9	1	0.31	0.0436	0.0145	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	1	0.0581	TRUE	347	1186	183	220	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00977--CCDC26	3	0	LINC00977	2223	chr8:130235467:-	CCDC26	10659	chr8:130411930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SETD3--CCDC85C	3	0	SETD3	1152	chr14:99947065:-	CCDC85C	27600	chr14:100002425:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	LOCAL_REARRANGEMENT:-:[30387],SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,CCDC85C->chr14:99977603-100070363:-,coiled-coil_domain_containing_85C	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--LRRC37A	2	3	KANSL1	8599	chr17:44230270:-	LRRC37A	37753	chr17:44377160:+	ONLY_REF_SPLICE	YES	74	11	0.06	0.31	0.0291	0.0436	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.31	0.0727	TRUE	9	6	1	5	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	2	2	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	11	8	0.27	0.33	0.0291	0.0291	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.33	0.0582	TRUE	37	101	7	40	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--GNAS	2	1	AC131097.3	5844	chr2:242908198:+	GNAS	26337	chr20:57470667:+	ONLY_REF_SPLICE	YES	48	453	0.06	0.01	0.0291	0.0145	AC131097.3->chr2:242823514-243020873:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.0436	FALSE	0	0	0	1	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--SRSF1	2	1	CHD2	6529	chr15:93444529:+	SRSF1	62155	chr17:56082402:-	ONLY_REF_SPLICE	YES	85	477	0.03	0.01	0.0291	0.0145	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0436	FALSE	1	2	0	9	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TADA2B--SORCS2	2	1	TADA2B	2647	chr4:7045576:+	SORCS2	14461	chr4:7398015:+	ONLY_REF_SPLICE	YES	40	0	0.07	1	0.0291	0.0145	GTEx_FI:{Brain=[count:74=pct:11.2],Blood_Vessel=[count:12=pct:3.3],Nerve=[count:8=pct:4.7],Muscle=[count:6=pct:2.6],Pancreas=[count:5=pct:2.8],Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:3=pct:5.7],Breast=[count:2=pct:1.8],Skin=[count:2=pct:0.6],Thyroid=[count:2=pct:1.1],Colon=[count:2=pct:1.0],Uterus=[count:2=pct:4.7],Testis=[count:1=pct:1.0],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},TADA2B->chr4:7043626-7059679:+,transcriptional_adaptor_2B,SORCS2->chr4:7194265-7744554:+,sortilin_related_VPS10_domain_containing_receptor_2	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0436	TRUE	95	84	3	6	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	4	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	NO	5	483	0.5	0.01	0.0145	0.0581	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.5	0.0726	FALSE	0	0	0	19	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--RP11-298J20.4	2	0	AC131097.3	5844	chr2:242908198:+	RP11-298J20.4	11631	chr10:126631026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	AC131097.3->chr2:242823514-243020873:+,RP11-298J20.4->chr10:126605712-126631450:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--SHARPIN	2	0	CHD2	6529	chr15:93444529:+	SHARPIN	63137	chr8:145158128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SHARPIN->SHANK_associated_RH_domain_interactor,chr8:145153536-145163027:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--CSNK1D	2	0	CPSF6	11046	chr12:69656342:+	CSNK1D	27622	chr17:80211120:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Lung=[count:3=pct:1.8],Ovary=[count:1=pct:1.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=3;pct=0.03%;dist=Lung=3},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0291	TRUE	6	4	0	4	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUX1--UBE2D3	2	0	CUX1	6304	chr7:101559505:+	UBE2D3	60905	chr4:103747793:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC25--UGCG	2	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0291	TRUE	50	73	10	50	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FUBP1--IVNS1ABP	2	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0291	TRUE	1	4	0	16	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	3	3	0.62	0.62	0.0145	0.0581	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.62	0.0726	FALSE	0	23	1	67	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0291	TRUE	62	24	1	171	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP13-188A5.1--KLF8	1	3	RP13-188A5.1	1678	chrX:55935233:+	KLF8	6745	chrX:56259591:+	ONLY_REF_SPLICE	NO	2	0	0.67	1	0.0145	0.0436	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0581	TRUE	3	12	3	6	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD20A18P--ANKRD20A9P	1	2	ANKRD20A18P	1203	chr21:15436848:+	ANKRD20A9P	8947	chr13:19435684:-	ONLY_REF_SPLICE	NO	3	2	0.5	0.6	0.0145	0.0291	NUCLCLUST,ANKRD20A18P->ankyrin_repeat_domain_20_family_member_A18,_pseudogene,chr21:15436646-15441408:+,ANKRD20A9P->ankyrin_repeat_domain_20_family_member_A9,_pseudogene,chr13:19390858-19446107:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.6	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	6	0	0.33	1	0.0145	0.0291	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.0436	FALSE	164	806	69	479	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	4	0	0.43	1	0.0145	0.0291	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.0436	FALSE	125	705	46	456	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	7	8	0.3	0.27	0.0145	0.0291	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.3	0.0436	FALSE	0	48	1	163	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0145	0.0291	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	FALSE	407	2205	196	549	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD20A18P--ANKRD20A9P	1	1	ANKRD20A18P	2654	chr21:15441408:+	ANKRD20A9P	9978	chr13:19433013:-	ONLY_REF_SPLICE	YES	0	3	1	0.4	0.0145	0.0145	NUCLCLUST,ANKRD20A18P->ankyrin_repeat_domain_20_family_member_A18,_pseudogene,chr21:15436646-15441408:+,ANKRD20A9P->ankyrin_repeat_domain_20_family_member_A9,_pseudogene,chr13:19390858-19446107:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.029	TRUE	0	1	0	1	1	TRUE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRWD1--SRSF1	1	1	BRWD1	4942	chr21:40670358:-	SRSF1	59071	chr17:56082402:-	ONLY_REF_SPLICE	YES	68	477	0.03	0	0.0145	0.0145	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.029	FALSE	1	0	0	1	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--AKR1E2	1	1	CHD2	6529	chr15:93444529:+	AKR1E2	63246	chr10:4872867:+	ONLY_REF_SPLICE	YES	85	3	0.02	0.4	0.0145	0.0145	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.4	0.029	TRUE	0	0	0	1	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	16	1	0.11	0.0145	0.0145	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.029	TRUE	15	36	8	26	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--GDI2	1	1	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	NO	10	439	0.17	0	0.0145	0.0145	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.17	0.029	FALSE	0	6	0	16	3	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF212--CTBP1	1	1	RNF212	6789	chr4:1090553:-	CTBP1	25519	chr4:1235307:-	ONLY_REF_SPLICE	NO	185	60	0.01	0.03	0.0145	0.0145	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[97886],RNF212->chr4:1050038-1107350:-,ring_finger_protein_212,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.029	FALSE	1	6	0	5	1	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0145	0.0145	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	FALSE	93	270	15	244	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--CTBP1	1	1	UVSSA	7499	chr4:1349033:+	CTBP1	24040	chr4:1235307:-	ONLY_REF_SPLICE	YES	17	60	0.11	0.03	0.0145	0.0145	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.11	0.029	TRUE	23	5	0	14	0	FALSE	ACH-000995
JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1303	53	0	0.04	0.0145	0.0145	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	JURKAT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.029	FALSE	6	50	7	115	0	FALSE	ACH-000995
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLSTN1--MRPL51	178	36	CLSTN1	3007	chr1:9833330:-	MRPL51	23512	chr12:6602138:-	ONLY_REF_SPLICE	YES	43	479	0.83	0.31	1.7607	0.3561	{Klijn_CCL:Lymphoid=1},CLSTN1->calsyntenin_1,chr1:9789084-9884584:-,MRPL51->chr12:6601150-6603007:-,mitochondrial_ribosomal_protein_L51	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.83	2.1168	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	139	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.375	0.2671	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.6421	TRUE	508	994	45	981	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	88	11	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.93	1	0.8705	0.1088	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.9793	FALSE	292	1546	117	613	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	79	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	95	5	0.46	0.94	0.7814	0.0297	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.94	0.8111	TRUE	519	3926	326	965	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	66	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6529	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6529	TRUE	0	0	0	518	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLRA3--SPIDR	45	21	GLRA3	1574	chr4:175749892:-	SPIDR	47822	chr8:48586363:+	ONLY_REF_SPLICE	YES	14	51	0.82	0.56	0.4451	0.2077	GLRA3->chr4:175558065-175750465:-,glycine_receptor_alpha_3,SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	0.82	0.6528	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNASET2--RPS6KA2	39	22	RNASET2	10057	chr6:167352383:-	RPS6KA2	22351	chr6:167271747:-	ONLY_REF_SPLICE	YES	663	5	0.08	0.92	0.3858	0.2176	{Klijn_CCL:Kidney=1,Cervix=1},NEIGHBORS[23053],RNASET2->Oncogene{Bushman},chr6:167342992-167370679:-,ribonuclease_T2,RPS6KA2->chr6:166822852-167319939:-,ribosomal_protein_S6_kinase_A2	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.92	0.6034	FALSE	1	1	0	3	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	38	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3759	0.0198	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3957	FALSE	462	80	0	856	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	37	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.366	0.0594	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4254	FALSE	416	2512	207	587	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	22	4	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	6301	0	0	1	0.2176	0.0396	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2572	TRUE	0	0	0	100	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	19	14	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	29	0	0.53	1	0.1879	0.1385	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	1	0.3264	FALSE	125	705	46	456	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	17	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1682	0.0198	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.188	FALSE	499	1288	110	792	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPIDR--FER1L6	14	11	SPIDR	18759	chr8:48511758:+	FER1L6	76480	chr8:125107137:+	ONLY_REF_SPLICE	YES	52	0	0.32	1	0.1385	0.1088	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,FER1L6->chr8:124864227-125132302:+,fer-1_like_family_member_6	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.2473	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNASET2--RPS6KA2	10	22	RNASET2	12358	chr6:167347579:-	RPS6KA2	22351	chr6:167271747:-	ONLY_REF_SPLICE	YES	642	5	0.05	0.86	0.0989	0.2176	{Klijn_CCL:Kidney=1,Cervix=1},NEIGHBORS[23053],RNASET2->Oncogene{Bushman},chr6:167342992-167370679:-,ribonuclease_T2,RPS6KA2->chr6:166822852-167319939:-,ribosomal_protein_S6_kinase_A2	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.86	0.3165	FALSE	0	0	0	2	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	7	20	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	52	0	0.34	1	0.0692	0.1978	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	1	0.267	FALSE	164	806	69	479	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.089	0.0692	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1582	FALSE	499	1288	110	792	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLSTN1--MRPL51	7	13	CLSTN1	3007	chr1:9833330:-	MRPL51	24017	chr12:6601633:-	ONLY_REF_SPLICE	YES	43	359	0.32	0.05	0.0692	0.1286	{Klijn_CCL:Lymphoid=1},CLSTN1->calsyntenin_1,chr1:9789084-9884584:-,MRPL51->chr12:6601150-6603007:-,mitochondrial_ribosomal_protein_L51	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.32	0.1978	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3695	0	0	1	0.089	0.0099	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0989	FALSE	13	9	0	364	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3723	0	0	1	0.089	0.0099	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0989	FALSE	13	9	0	364	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPIDR--FER1L6	7	7	SPIDR	18759	chr8:48511758:+	FER1L6	77623	chr8:125109512:+	ONLY_REF_SPLICE	YES	52	4	0.21	0.78	0.0692	0.0692	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,FER1L6->chr8:124864227-125132302:+,fer-1_like_family_member_6	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.78	0.1384	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEPT9--PTMA	7	6	SEPT9	42032	chr17:75495471:+	PTMA	47869	chr2:232573234:+	INCL_NON_REF_SPLICE	YES	2724	8	0	0.62	0.0692	0.0594	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.62	0.1286	TRUE	0	0	0	2	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	7	4	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0692	0.0396	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1088	TRUE	0	1	0	84	1	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0692	0.0297	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0989	FALSE	462	80	0	856	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	7	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	27	0	0.25	1	0.0692	0.0198	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.089	FALSE	272	151	14	158	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0.0198	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0792	FALSE	499	1288	110	792	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMTM8--CMTM7	6	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0594	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0594	FALSE	118	557	29	88	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--EEF1D	5	0	IGLL5	1480	chr22:23230439:+	EEF1D	18462	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0495	0	{Klijn_CCL:Lymphoid=1},IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0495	TRUE	1	4	0	2	1	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0495	TRUE	22	156	2	142	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEPT9--PTMA	3	8	SEPT9	42891	chr17:75496330:+	PTMA	47869	chr2:232573234:+	INCL_NON_REF_SPLICE	YES	1110	8	0.01	0.58	0.0297	0.0791	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.58	0.1088	TRUE	0	0	0	2	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	44	12	0.14	0.37	0.0396	0.0297	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.37	0.0693	TRUE	267	562	48	632	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	49	10	0.12	0.41	0.0396	0.0297	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.41	0.0693	TRUE	267	562	48	632	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0.0692	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0989	FALSE	499	1288	110	792	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	4	3	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	7	29	0.5	0.19	0.0396	0.0297	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.5	0.0693	FALSE	25	145	6	90	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--SERPINB5	4	2	IGH@	95370	chr14:106329408:-	SERPINB5	133334	chr18:61151655:+	ONLY_REF_SPLICE	YES	165	0	0.04	1	0.0396	0.0198	IGH@->Oncogene{Bushman},SERPINB5->Oncogene{Bushman},chr18:61143994-61172318:+,serpin_family_B_member_5	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	4	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0.0198	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0594	FALSE	93	270	15	244	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC25--UGCG	4	1	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	25	52	0.17	0.09	0.0396	0.0099	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.17	0.0495	TRUE	50	73	10	50	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--UBC	4	0	EEF2	2323	chr19:3984145:-	UBC	16943	chr12:125397363:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	GTEx&tcga_normals:4/3694=0.11%,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--UBC	4	0	EEF2	2323	chr19:3984145:-	UBC	17627	chr12:125396679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	GTEx&tcga_normals:4/3694=0.11%,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--UBC	4	0	EEF2	2323	chr19:3984145:-	UBC	17399	chr12:125396907:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	GTEx&tcga_normals:4/3694=0.11%,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNASET2--RPS6KA2	1	12	RNASET2	8943	chr6:167356507:-	RPS6KA2	22351	chr6:167271747:-	ONLY_REF_SPLICE	NO	721	5	0.02	0.72	0.0099	0.1187	{Klijn_CCL:Kidney=1,Cervix=1},NEIGHBORS[23053],RNASET2->Oncogene{Bushman},chr6:167342992-167370679:-,ribonuclease_T2,RPS6KA2->chr6:166822852-167319939:-,ribosomal_protein_S6_kinase_A2	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.72	0.1286	FALSE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--RP11-635N19.1	3	1	IGH@	95370	chr14:106329408:-	RP11-635N19.1	133334	chr18:61048610:+	ONLY_REF_SPLICE	YES	165	2	0.02	0.67	0.0297	0.0099	IGH@->Oncogene{Bushman},RP11-635N19.1->chr18:61034561-61048862:+	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.67	0.0396	TRUE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--SERPINB5	3	1	IGH@	94754	chr14:106330024:-	SERPINB5	133334	chr18:61151655:+	ONLY_REF_SPLICE	YES	165	0	0.02	1	0.0297	0.0099	IGH@->Oncogene{Bushman},SERPINB5->Oncogene{Bushman},chr18:61143994-61172318:+,serpin_family_B_member_5	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0396	TRUE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--IGHV3-29	3	0	CPSF6	11046	chr12:69656342:+	IGHV3-29	20032	chr14:106787666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,IGHV3-29->chr14:106787368-106787804:-,immunoglobulin_heavy_variable_3-29_(pseudogene)	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0297	TRUE	0	0	0	3	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0297	FALSE	462	80	0	856	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0297	FALSE	16	356	14	466	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0297	FALSE	0	48	1	163	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL3--EEF2	3	0	RPL3	3820	chr22:39713575:-	EEF2	16810	chr19:3980016:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	GTEx&tcga_normals:6/3694=0.16%,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0297	TRUE	0	0	0	3	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLSTN1--VAMP1	2	1	CLSTN1	3007	chr1:9833330:-	VAMP1	24101	chr12:6575517:-	ONLY_REF_SPLICE	YES	43	188	0.07	0.02	0.0198	0.0099	CLSTN1->calsyntenin_1,chr1:9789084-9884584:-,VAMP1->chr12:6571403-6580153:-,vesicle_associated_membrane_protein_1	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.07	0.0297	TRUE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--CSNK1D	2	1	CPSF6	11046	chr12:69656342:+	CSNK1D	27622	chr17:80211120:-	ONLY_REF_SPLICE	YES	130	180	0.02	0.02	0.0198	0.0099	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Lung=[count:3=pct:1.8],Ovary=[count:1=pct:1.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=3;pct=0.03%;dist=Lung=3},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.0297	TRUE	6	4	0	4	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTNNB1--IGFBP2	2	1	CTNNB1	3896	chr3:41241161:+	IGFBP2	26066	chr2:217525280:+	ONLY_REF_SPLICE	NO	423	461	0.01	0.01	0.0198	0.0099	CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,IGFBP2->Oncogene{Bushman},chr2:217497551-217529159:+,insulin_like_growth_factor_binding_protein_2	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0297	FALSE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MICAL3--PEX26	2	1	MICAL3	17825	chr22:18368644:-	PEX26	87699	chr22:18604246:+	ONLY_REF_SPLICE	YES	45	2	0.06	0.6	0.0198	0.0099	LOCAL_INVERSION:-:+:[53364],MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,PEX26->chr22:18560689-18613905:+,peroxisomal_biogenesis_factor_26	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.6	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNASET2--RPS6KA2	1	5	RNASET2	12358	chr6:167347579:-	RPS6KA2	30155	chr6:166952272:-	ONLY_REF_SPLICE	YES	642	7	0.01	0.46	0.0099	0.0495	{Klijn_CCL:Kidney=1,Cervix=1},NEIGHBORS[23053],RNASET2->Oncogene{Bushman},chr6:167342992-167370679:-,ribonuclease_T2,RPS6KA2->chr6:166822852-167319939:-,ribosomal_protein_S6_kinase_A2	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.46	0.0594	FALSE	0	1	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNASET2--RPS6KA2	1	5	RNASET2	10057	chr6:167352383:-	RPS6KA2	30155	chr6:166952272:-	ONLY_REF_SPLICE	YES	663	7	0.01	0.46	0.0099	0.0495	{Klijn_CCL:Kidney=1,Cervix=1},NEIGHBORS[23053],RNASET2->Oncogene{Bushman},chr6:167342992-167370679:-,ribonuclease_T2,RPS6KA2->chr6:166822852-167319939:-,ribosomal_protein_S6_kinase_A2	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.46	0.0594	FALSE	1	0	0	3	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0.0099	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0297	FALSE	515	4851	409	746	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--GNAS	2	1	RPS3	2292	chr11:75111821:+	GNAS	28819	chr20:57470667:+	ONLY_REF_SPLICE	YES	4169	515	0	0.01	0.0198	0.0099	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0297	FALSE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX21--EXOSC1	2	0	DDX21	9484	chr10:70730106:+	EXOSC1	28903	chr10:99197507:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	DDX21->DEAD-box_helicase_21,chr10:70715884-70744829:+,EXOSC1->chr10:99195899-99205774:-,exosome_component_1	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK6--PUS1	2	0	DOCK6	30772	chr19:11319362:-	PUS1	45272	chr12:132423718:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	DOCK6->chr19:11309971-11373157:-,dedicator_of_cytokinesis_6,PUS1->chr12:132413745-132428406:+,pseudouridylate_synthase_1	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXK2--NARF	2	0	FOXK2	3931	chr17:80521424:+	NARF	38758	chr17:80443373:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	LOCAL_REARRANGEMENT:+:[29176],FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,NARF->chr17:80416056-80448413:+,nuclear_prelamin_A_recognition_factor	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNL3--NEK4	2	0	GNL3	3816	chr3:52721631:+	NEK4	26428	chr3:52775515:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[16292],GNL3->G_protein_nucleolar_3,chr3:52715172-52728508:+,NEK4->NIMA_related_kinase_4,chr3:52744800-52804965:-	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	3	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1958--SNX30	2	0	KIAA1958	3467	chr9:115337531:+	SNX30	22440	chr9:115567056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	{Klijn_CCL:Lung=1,Colo-Rectal=1},NEIGHBORS[81441],KIAA1958->KIAA1958,chr9:115249127-115431677:+,SNX30->chr9:115513118-115643951:+,sorting_nexin_family_member_30	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	FALSE	5	9	0	7	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MFSD8--NRIP1	2	0	MFSD8	1924	chr4:128886227:-	NRIP1	20302	chr21:16415895:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	MFSD8->chr4:128838960-128887150:-,major_facilitator_superfamily_domain_containing_8,NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NBR2--STAT5B	2	0	NBR2	1161	chr17:41277787:+	STAT5B	14978	chr17:40384155:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	NBR2->chr17:41277627-41305688:+,neighbor_of_BRCA1_gene_2_(non-protein_coding),STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	P4HA1--NIPBL	2	0	P4HA1	1209	chr10:74856524:-	NIPBL	34112	chr5:36984778:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	P4HA1->chr10:74766975-74856732:-,prolyl_4-hydroxylase_subunit_alpha_1,NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNASET2--RPS6KA2	1	4	RNASET2	2095	chr6:167369585:-	RPS6KA2	22351	chr6:167271747:-	ONLY_REF_SPLICE	YES	1078	5	0	0.5	0.0099	0.0396	{Klijn_CCL:Kidney=1,Cervix=1},NEIGHBORS[23053],RNASET2->Oncogene{Bushman},chr6:167342992-167370679:-,ribonuclease_T2,RPS6KA2->chr6:166822852-167319939:-,ribosomal_protein_S6_kinase_A2	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.5	0.0495	FALSE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIAL1--HSP90AB1	2	0	TIAL1	1596	chr10:121355946:-	HSP90AB1	23070	chr6:44220782:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-,HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	2	0	TIMM23	4782	chr10:51612904:-	RP11-464F9.1	30164	chr10:75439864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMSB10--VRK1	2	0	TMSB10	1094	chr2:85132842:+	VRK1	20468	chr14:97397668:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,VRK1->Oncogene{Bushman},chr14:97263641-97398059:+,vaccinia_related_kinase_1	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2K--PRRC2C	2	0	UBE2K	5683	chr4:39776553:+	PRRC2C	52685	chr1:171557518:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A32--RP11-318M2.2	1	3	SLC25A32	1406	chr8:104427012:-	RP11-318M2.2	18579	chr8:104258912:-	ONLY_REF_SPLICE	NO	72	0	0.05	1	0.0099	0.0297	NEIGHBORS[99863],SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,RP11-318M2.2->chr8:104169218-104311000:-	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0396	FALSE	1	0	0	3	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPIDR--FER1L6	1	3	SPIDR	18759	chr8:48511758:+	FER1L6	78137	chr8:125110026:+	ONLY_REF_SPLICE	NO	52	16	0.07	0.2	0.0099	0.0297	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,FER1L6->chr8:124864227-125132302:+,fer-1_like_family_member_6	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.2	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A32--RP11-318M2.2	1	2	SLC25A32	1406	chr8:104427012:-	RP11-318M2.2	20486	chr8:104246600:-	ONLY_REF_SPLICE	YES	72	0	0.04	1	0.0099	0.0198	NEIGHBORS[99863],SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,RP11-318M2.2->chr8:104169218-104311000:-	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0297	FALSE	0	0	0	3	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A32--RP11-318M2.2	1	2	SLC25A32	1406	chr8:104427012:-	RP11-318M2.2	25340	chr8:104178524:-	ONLY_REF_SPLICE	NO	72	0	0.04	1	0.0099	0.0198	NEIGHBORS[99863],SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,RP11-318M2.2->chr8:104169218-104311000:-	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0297	FALSE	4	4	0	4	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADARB2--WDR37	1	1	ADARB2	1426	chr10:1779245:-	WDR37	24611	chr10:1118056:+	ONLY_REF_SPLICE	NO	23	23	0.08	0.08	0.0099	0.0099	LOCAL_INVERSION:-:+:[49836],ADARB2->Oncogene{Bushman},adenosine_deaminase,_RNA_specific_B2_(inactive),chr10:1228073-1779670:-,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.08	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANO6--ARID2	1	1	ANO6	1405	chr12:45610174:+	ARID2	41049	chr12:46205201:+	ONLY_REF_SPLICE	YES	39	28	0.05	0.07	0.0099	0.0099	ANO6->anoctamin_6,chr12:45609770-45834187:+,ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.07	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCAT1--ASUN	1	1	BCAT1	8613	chr12:25031464:-	ASUN	31261	chr12:27081838:-	ONLY_REF_SPLICE	YES	159	43	0.01	0.04	0.0099	0.0099	BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C11orf73--PICALM	1	1	C11orf73	3558	chr11:86017524:+	PICALM	14527	chr11:85742653:-	ONLY_REF_SPLICE	NO	77	82	0.03	0.02	0.0099	0.0099	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1},C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0198	TRUE	1	2	0	10	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAMTA1--SLAIN2	1	1	CAMTA1	4547	chr1:6885270:+	SLAIN2	43835	chr4:48379913:+	ONLY_REF_SPLICE	YES	54	36	0.04	0.05	0.0099	0.0099	CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+,SLAIN2->SLAIN_motif_family_member_2,chr4:48343339-48428229:+	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.05	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHCHD3--EXOC4	1	1	CHCHD3	10629	chr7:132570422:-	EXOC4	32133	chr7:133160082:+	ONLY_REF_SPLICE	NO	249	68	0.01	0.03	0.0099	0.0099	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0198	FALSE	0	1	0	2	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLSTN1--VAMP1	1	1	CLSTN1	3007	chr1:9833330:-	VAMP1	24452	chr12:6575166:-	ONLY_REF_SPLICE	YES	43	114	0.04	0.02	0.0099	0.0099	CLSTN1->calsyntenin_1,chr1:9789084-9884584:-,VAMP1->chr12:6571403-6580153:-,vesicle_associated_membrane_protein_1	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT2--SRSF7	1	1	CNOT2	11745	chr12:70704797:+	SRSF7	38091	chr2:38975795:-	ONLY_REF_SPLICE	NO	91	407	0.02	0	0.0099	0.0099	GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Vagina=1,Artery_-_Aorta=1},CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,SRSF7->chr2:38970741-38978636:-,serine/arginine-rich_splicing_factor_7	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTF2E2--KDM6A	1	1	GTF2E2	9375	chr8:30464574:-	KDM6A	24774	chrX:44910954:+	ONLY_REF_SPLICE	YES	85	20	0.02	0.09	0.0099	0.0099	GTF2E2->chr8:30435835-30515768:-,general_transcription_factor_IIE_subunit_2,KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.09	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LHPP--FAM53B	1	1	LHPP	9600	chr10:126234758:+	FAM53B	23684	chr10:126370948:-	ONLY_REF_SPLICE	YES	20	67	0.09	0.03	0.0099	0.0099	NUCLCLUST,LOCAL_INVERSION:+:-:[1404],LHPP->chr10:126150403-126306457:+,phospholysine_phosphohistidine_inorganic_pyrophosphate_phosphatase,FAM53B->chr10:126307861-126432838:-,family_with_sequence_similarity_53_member_B	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.09	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHACTR1--PPAPDC1B	1	1	PHACTR1	23952	chr6:13286454:+	PPAPDC1B	30996	chr8:38124909:-	ONLY_REF_SPLICE	YES	236	81	0.01	0.02	0.0099	0.0099	PHACTR1->chr6:12717893-13288645:+,phosphatase_and_actin_regulator_1,PPAPDC1B->chr8:38120648-38126761:-	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPHLN1--YAF2	1	1	PPHLN1	11329	chr12:42749024:+	YAF2	46369	chr12:42555567:-	ONLY_REF_SPLICE	NO	138	102	0.01	0.02	0.0099	0.0099	LOCAL_INVERSION:+:-:[98],PPHLN1->chr12:42632249-42853517:+,periphilin_1,YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0198	FALSE	0	0	0	2	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP4R1--VAPA	1	1	PPP4R1	9044	chr18:9588087:-	VAPA	40734	chr18:9950392:+	ONLY_REF_SPLICE	YES	83	310	0.02	0.01	0.0099	0.0099	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0198	FALSE	1	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKDC--MCM4	1	1	PRKDC	13951	chr8:48845580:-	MCM4	94918	chr8:48879925:+	ONLY_REF_SPLICE	YES	126	492	0.02	0	0.0099	0.0099	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[2],PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--TTC28	1	1	RUNX1	21108	chr21:36421139:-	TTC28	52054	chr22:28559587:-	ONLY_REF_SPLICE	YES	66	16	0.03	0.11	0.0099	0.0099	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.11	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAP--ATP13A1	1	1	SCAP	9962	chr3:47466975:-	ATP13A1	33599	chr19:19762606:-	ONLY_REF_SPLICE	YES	102	121	0.02	0.02	0.0099	0.0099	SCAP->SREBF_chaperone,chr3:47455203-47518616:-,ATP13A1->ATPase_13A1,chr19:19756007-19774502:-	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USF1--SRSF4	1	1	USF1	1120	chr1:161015648:-	SRSF4	11520	chr1:29495150:-	ONLY_REF_SPLICE	YES	37	219	0.05	0.01	0.0099	0.0099	USF1->Oncogene{Bushman},chr1:161009041-161015767:-,upstream_transcription_factor_1,SRSF4->chr1:29474255-29508499:-,serine/arginine-rich_splicing_factor_4	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	NO	27	0	0.07	1	0.0099	0.0099	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0198	FALSE	28	14	1	23	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--NXN	1	1	YWHAE	1332	chr17:1303341:-	NXN	29487	chr17:708487:-	ONLY_REF_SPLICE	YES	1526	758	0	0	0.0099	0.0099	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,NXN->chr17:702553-883010:-,nucleoredoxin	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0198	FALSE	0	0	0	2	0	FALSE	ACH-000124
OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB2--ARHGAP15	1	1	ZEB2	20128	chr2:145182363:-	ARHGAP15	56397	chr2:144276835:+	ONLY_REF_SPLICE	YES	86	79	0.02	0.02	0.0099	0.0099	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.08%,GTEx_FI:{Blood=[count:17=pct:9.8],Whole_Blood=[count:16=pct:12.1],Nerve=[count:6=pct:3.5],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=23,Nerve_-_Tibial=9,Spleen=4,Lung=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.0198	TRUE	1	0	0	2	0	FALSE	ACH-000124
NCIH1930_LUNG	TLK2--CA10	129	76	TLK2	12803	chr17:60601692:+	CA10	51331	chr17:49731097:-	ONLY_REF_SPLICE	YES	74	0	0.73	1	1.7462	1.0287	{Klijn_CCL:Lung=1},TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,CA10->carbonic_anhydrase_10,chr17:49707674-50237377:-	NCIH1930_LUNG	0.73	1	2.7749	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	RP11-123O10.4--GRIP1	91	32	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.99	1.2318	0.4332	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1930_LUNG	0.99	1	1.665	FALSE	416	2512	207	587	0	FALSE	ACH-000870
NCIH1930_LUNG	RP11-408A13.2--NFIB	82	48	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	12	1	0.92	1.11	0.6497	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	NCIH1930_LUNG	0.92	1	1.7597	TRUE	0	14	0	20	14	FALSE	ACH-000870
NCIH1930_LUNG	ANO6--RP11-463H12.2	53	34	ANO6	1405	chr12:45610174:+	RP11-463H12.2	37212	chr4:55820486:+	ONLY_REF_SPLICE	YES	169	0	0.34	1	0.7174	0.4602	ANO6->anoctamin_6,chr12:45609770-45834187:+,RP11-463H12.2->chr4:55809796-55822985:+	NCIH1930_LUNG	0.34	1	1.1776	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	AP003900.6--AP000345.1	43	5	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	10	0	0.83	1	0.5821	0.0677	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1930_LUNG	0.83	1	0.6498	TRUE	4	17	0	31	0	FALSE	ACH-000870
NCIH1930_LUNG	ZNF654--HMGB2	42	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5685	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1930_LUNG	1	1	0.5685	TRUE	0	0	0	518	0	FALSE	ACH-000870
NCIH1930_LUNG	OR51S1--TP53I11	41	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.555	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH1930_LUNG	1	1	0.555	TRUE	402	216	10	229	0	FALSE	ACH-000870
NCIH1930_LUNG	TLK2--CA10	30	42	TLK2	11707	chr17:60600538:+	CA10	51331	chr17:49731097:-	ONLY_REF_SPLICE	YES	78	0	0.48	1	0.4061	0.5685	{Klijn_CCL:Lung=1},TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,CA10->carbonic_anhydrase_10,chr17:49707674-50237377:-	NCIH1930_LUNG	0.48	1	0.9746	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	PHRF1--IFITM2	35	10	PHRF1	2697	chr11:582081:+	IFITM2	21516	chr11:308231:+	ONLY_REF_SPLICE	YES	97	4	0.32	0.92	0.4738	0.1354	PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,IFITM2->chr11:307631-315272:+,interferon_induced_transmembrane_protein_2	NCIH1930_LUNG	0.32	0.92	0.6092	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	TIMM23B--LINC00843	30	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4061	0.2166	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1930_LUNG	1	1	0.6227	TRUE	508	994	45	981	0	FALSE	ACH-000870
NCIH1930_LUNG	ANO6--RP11-463H12.2	18	40	ANO6	3574	chr12:45664307:+	RP11-463H12.2	37212	chr4:55820486:+	ONLY_REF_SPLICE	YES	173	0	0.25	1	0.2437	0.5414	ANO6->anoctamin_6,chr12:45609770-45834187:+,RP11-463H12.2->chr4:55809796-55822985:+	NCIH1930_LUNG	0.25	1	0.7851	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	AP003900.6--AP000345.1	21	10	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	14	0	0.69	1	0.2843	0.1354	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1930_LUNG	0.69	1	0.4197	TRUE	0	8	0	37	1	FALSE	ACH-000870
NCIH1930_LUNG	MTX2--KIAA1919	19	18	MTX2	1275	chr2:177134397:+	KIAA1919	16461	chr6:111583460:+	ONLY_REF_SPLICE	YES	389	13	0.09	0.74	0.2572	0.2437	MTX2->chr2:177134123-177202753:+,metaxin_2,KIAA1919->chr6:111580551-111592370:+	NCIH1930_LUNG	0.09	0.74	0.5009	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	TLK2--CA10	3	78	TLK2	12803	chr17:60601692:+	CA10	50077	chr17:49739206:-	ONLY_REF_SPLICE	YES	74	0	0.52	1	0.0406	1.0558	{Klijn_CCL:Lung=1},TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,CA10->carbonic_anhydrase_10,chr17:49707674-50237377:-	NCIH1930_LUNG	0.52	1	1.0964	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	ANO6--RP11-463H12.2	19	9	ANO6	1405	chr12:45610174:+	RP11-463H12.2	38398	chr4:55822808:+	ONLY_REF_SPLICE	YES	169	24	0.14	0.54	0.2572	0.1218	ANO6->anoctamin_6,chr12:45609770-45834187:+,RP11-463H12.2->chr4:55809796-55822985:+	NCIH1930_LUNG	0.14	0.54	0.379	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	ANO6--RP11-463H12.2	9	37	ANO6	2511	chr12:45622056:+	RP11-463H12.2	37212	chr4:55820486:+	ONLY_REF_SPLICE	YES	167	0	0.22	1	0.1218	0.5008	ANO6->anoctamin_6,chr12:45609770-45834187:+,RP11-463H12.2->chr4:55809796-55822985:+	NCIH1930_LUNG	0.22	1	0.6226	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	TIMM23--RP11-464F9.1	16	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	90	1	0.16	0.94	0.2166	0.0135	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1930_LUNG	0.16	0.94	0.2301	TRUE	519	3926	326	965	0	FALSE	ACH-000870
NCIH1930_LUNG	XXyac-YX155B6.6--HYDIN	13	4	XXyac-YX155B6.6	8884	chr1:147668236:-	HYDIN	22289	chr16:71196633:-	ONLY_REF_SPLICE	YES	1	5	0.94	0.77	0.176	0.0541	GTEx_FI:{Brain=[count:3=pct:0.5]},XXyac-YX155B6.6->chr1:147635066-147700929:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1930_LUNG	0.77	0.94	0.2301	TRUE	3	1	0	4	0	FALSE	ACH-000870
NCIH1930_LUNG	MT-TA--MT-TC	13	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.176	0.0406	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1930_LUNG	1	1	0.2166	FALSE	462	80	0	856	0	FALSE	ACH-000870
NCIH1930_LUNG	FAM214A--CYP19A1	11	8	FAM214A	3459	chr15:52970203:-	CYP19A1	35603	chr15:51535147:-	ONLY_REF_SPLICE	YES	6	4	0.76	0.83	0.1489	0.1083	FAM214A->chr15:52873514-53002014:-,family_with_sequence_similarity_214_member_A,CYP19A1->Oncogene{Bushman},chr15:51500254-51630807:-,cytochrome_P450_family_19_subfamily_A_member_1	NCIH1930_LUNG	0.76	0.83	0.2572	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	LINC01014--KCNMB2	11	6	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	10	15	0.63	0.53	0.1489	0.0812	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH1930_LUNG	0.53	0.63	0.2301	FALSE	11	60	26	37	0	FALSE	ACH-000870
NCIH1930_LUNG	RP11-123O10.4--GRIP1	9	13	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	4	1	0.85	0.1218	0.176	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1930_LUNG	0.85	1	0.2978	FALSE	93	270	15	244	0	FALSE	ACH-000870
NCIH1930_LUNG	RP11-120D5.1--MID1	10	7	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	23	0.89	0.42	0.1354	0.0948	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1930_LUNG	0.42	0.89	0.2302	FALSE	16	356	14	466	0	FALSE	ACH-000870
NCIH1930_LUNG	RP11-123O10.4--GRIP1	3	35	RP11-123O10.4	2167	chr12:67285681:-	GRIP1	11081	chr12:66990707:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.0406	0.4738	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1930_LUNG	0.97	1	0.5144	FALSE	0	5	0	12	0	FALSE	ACH-000870
NCIH1930_LUNG	CALM3--MT-ND4L	8	13	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1992	0	0.01	1	0.1083	0.176	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1930_LUNG	0.01	1	0.2843	FALSE	1	1	0	107	0	FALSE	ACH-000870
NCIH1930_LUNG	GDAP1--RP11-758M4.1	10	5	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	237	0	0.06	1	0.1354	0.0677	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH1930_LUNG	0.06	1	0.2031	TRUE	7	28	0	43	0	FALSE	ACH-000870
NCIH1930_LUNG	DPH7--PTP4A3	11	0	DPH7	1297	chr9:140473091:-	PTP4A3	14726	chr8:142431487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1489	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:10=pct:2.7],Heart=[count:7=pct:2.8],Pituitary=[count:4=pct:7.7],Nerve=[count:2=pct:1.2],Esophagus=[count:2=pct:0.5],Colon=[count:2=pct:1.0],Lung=[count:2=pct:1.2],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Kidney=[count:1=pct:7.1],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},GTEx_v2:{count=46;pct=0.53%;dist=Artery_-_Tibial=9,Heart_-_Atrial_Appendage=9,Pituitary=6,Cells_-_EBV-transformed_lymphocytes=5,Artery_-_Aorta=3,Lung=2,Artery_-_Coronary=2,Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hypothalamus=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1,Testis=1},DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7,PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3	NCIH1930_LUNG	1	1	0.1489	TRUE	29	213	5	17	0	FALSE	ACH-000870
NCIH1930_LUNG	TEN1--UNK	8	4	TEN1	3872	chr17:73982365:+	UNK	15113	chr17:73805841:+	ONLY_REF_SPLICE	YES	74	71	0.14	0.14	0.1083	0.0541	{Klijn_CCL:Lung=1},TEN1->TEN1_CST_complex_subunit,chr17:73975301-73996667:+,UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger	NCIH1930_LUNG	0.14	0.14	0.1624	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	MTX2--KIAA1919	3	19	MTX2	2025	chr2:177135147:+	KIAA1919	16461	chr6:111583460:+	ONLY_REF_SPLICE	YES	446	13	0.05	0.63	0.0406	0.2572	MTX2->chr2:177134123-177202753:+,metaxin_2,KIAA1919->chr6:111580551-111592370:+	NCIH1930_LUNG	0.05	0.63	0.2978	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	AC027612.3--AP000345.1	7	2	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	7	0	0.56	1	0.0948	0.0271	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH1930_LUNG	0.56	1	0.1219	TRUE	0	0	0	11	0	TRUE	ACH-000870
NCIH1930_LUNG	PHRF1--IFITM2	4	13	PHRF1	2697	chr11:582081:+	IFITM2	21029	chr11:307744:+	INCL_NON_REF_SPLICE	YES	97	0	0.15	1	0.0541	0.176	PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,IFITM2->chr11:307631-315272:+,interferon_induced_transmembrane_protein_2	NCIH1930_LUNG	0.15	1	0.2301	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	LINC01014--KCNMB2	5	7	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	10	12	0.55	0.5	0.0677	0.0948	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH1930_LUNG	0.5	0.55	0.1625	FALSE	12	33	18	33	0	FALSE	ACH-000870
NCIH1930_LUNG	AL109763.2--TMPRSS15	6	2	AL109763.2	6027	chr21:19961845:-	TMPRSS15	13875	chr21:19770646:-	ONLY_REF_SPLICE	YES	16	0	0.33	1	0.0812	0.0271	NEIGHBORS[75386],AL109763.2->chr21:19933583-20132321:-,TMPRSS15->chr21:19641433-19858197:-,transmembrane_protease,_serine_15	NCIH1930_LUNG	0.33	1	0.1083	FALSE	0	0	0	2	0	FALSE	ACH-000870
NCIH1930_LUNG	RAD51C--PPM1E	5	5	RAD51C	3498	chr17:56772550:+	PPM1E	20728	chr17:57046900:+	ONLY_REF_SPLICE	YES	142	18	0.07	0.36	0.0677	0.0677	NEIGHBORS[21527],RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	NCIH1930_LUNG	0.07	0.36	0.1354	FALSE	0	0	0	1	0	FALSE	ACH-000870
NCIH1930_LUNG	RP11-680G10.1--GSE1	5	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	51	1	0.14	0.0677	0.0406	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1930_LUNG	0.14	1	0.1083	TRUE	465	1949	224	605	0	FALSE	ACH-000870
NCIH1930_LUNG	C15orf57--CBX3	4	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	29	43	0.26	0.19	0.0541	0.0812	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1930_LUNG	0.19	0.26	0.1353	TRUE	267	562	48	632	0	FALSE	ACH-000870
NCIH1930_LUNG	PHRF1--IFITM2	5	2	PHRF1	1107	chr11:576592:+	IFITM2	21516	chr11:308231:+	ONLY_REF_SPLICE	YES	19	4	0.27	0.64	0.0677	0.0271	PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,IFITM2->chr11:307631-315272:+,interferon_induced_transmembrane_protein_2	NCIH1930_LUNG	0.27	0.64	0.0948	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	RP11-444D3.1--SOX5	4	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	8	1	0.53	0.0541	0.0677	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1930_LUNG	0.53	1	0.1218	TRUE	477	1352	189	275	0	FALSE	ACH-000870
NCIH1930_LUNG	XXyac-YX155B6.6--HYDIN	5	1	XXyac-YX155B6.6	8884	chr1:147668236:-	HYDIN	23597	chr16:71186686:-	ONLY_REF_SPLICE	YES	1	10	0.86	0.38	0.0677	0.0135	GTEx_FI:{Brain=[count:3=pct:0.5]},XXyac-YX155B6.6->chr1:147635066-147700929:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1930_LUNG	0.38	0.86	0.0812	TRUE	2	0	0	1	0	FALSE	ACH-000870
NCIH1930_LUNG	TEN1--UNK	4	4	TEN1	3872	chr17:73982365:+	UNK	14301	chr17:73805029:+	ONLY_REF_SPLICE	YES	74	69	0.1	0.1	0.0541	0.0541	{Klijn_CCL:Lung=1},TEN1->TEN1_CST_complex_subunit,chr17:73975301-73996667:+,UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger	NCIH1930_LUNG	0.1	0.1	0.1082	TRUE	0	0	0	1	0	FALSE	ACH-000870
NCIH1930_LUNG	RP11-120D5.1--MID1	3	6	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	23	0.69	0.28	0.0406	0.0812	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1930_LUNG	0.28	0.69	0.1218	FALSE	0	48	1	163	0	FALSE	ACH-000870
NCIH1930_LUNG	AP003900.6--AP000345.1	3	5	AP003900.6	2187	chr21:11172043:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	14	0	0.36	1	0.0406	0.0677	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1930_LUNG	0.36	1	0.1083	TRUE	1	2	0	16	0	FALSE	ACH-000870
NCIH1930_LUNG	PHRF1--IFITM2	2	7	PHRF1	2222	chr11:581606:+	IFITM2	21516	chr11:308231:+	ONLY_REF_SPLICE	YES	161	4	0.05	0.69	0.0271	0.0948	PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,IFITM2->chr11:307631-315272:+,interferon_induced_transmembrane_protein_2	NCIH1930_LUNG	0.05	0.69	0.1219	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	RP11-680G10.1--GSE1	3	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	14	1	0.3	0.0406	0.0406	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1930_LUNG	0.3	1	0.0812	TRUE	458	1351	185	561	0	FALSE	ACH-000870
NCIH1930_LUNG	NRIP1--AF127936.7	3	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0.0271	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1930_LUNG	1	1	0.0677	FALSE	292	1546	117	613	0	FALSE	ACH-000870
NCIH1930_LUNG	FGF14-IT1--FGF14	3	1	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	61	1	0.06	0.0406	0.0135	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	NCIH1930_LUNG	0.06	1	0.0541	TRUE	71	201	23	28	0	FALSE	ACH-000870
NCIH1930_LUNG	ACTB--FSCN1	3	0	ACTB	4493	chr7:5570155:-	FSCN1	14341	chr7:5642888:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	LOCAL_INVERSION:-:+:[29024],ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1	NCIH1930_LUNG	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1930_LUNG	1	1	0.0406	FALSE	183	104	9	328	0	FALSE	ACH-000870
NCIH1930_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1930_LUNG	1	1	0.0406	FALSE	183	104	9	328	0	FALSE	ACH-000870
NCIH1930_LUNG	NLGN4X--RP11-733O18.1	3	0	NLGN4X	2998	chrX:6144907:-	RP11-733O18.1	24670	chrX:5587647:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	NLGN4X->chrX:5758678-6146904:-,neuroligin_4,_X-linked,RP11-733O18.1->chrX:5571462-5644346:-	NCIH1930_LUNG	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1930_LUNG	1	1	0.0406	TRUE	0	0	0	434	0	FALSE	ACH-000870
NCIH1930_LUNG	EFNA5--FBXL17	2	3	EFNA5	1407	chr5:107006190:-	FBXL17	22958	chr5:107356702:-	ONLY_REF_SPLICE	YES	14	13	0.26	0.28	0.0271	0.0406	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Brain_-_Frontal_Cortex_(BA9)=1,Nerve_-_Tibial=1},{Klijn_CCL:Head-Neck=1,Lung=1},EFNA5->chr5:106712590-107006596:-,ephrin_A5,FBXL17->F-box_and_leucine-rich_repeat_protein_17,chr5:107194736-107717799:-	NCIH1930_LUNG	0.26	0.28	0.0677	TRUE	2	2	0	3	0	FALSE	ACH-000870
NCIH1930_LUNG	NRIP1--AF127936.7	2	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.25	1	0.0271	0.0406	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1930_LUNG	0.25	1	0.0677	FALSE	164	806	69	479	0	FALSE	ACH-000870
NCIH1930_LUNG	RP11-444D3.1--SOX5	1	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	13	1	0.32	0.0135	0.0677	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1930_LUNG	0.32	1	0.0812	TRUE	160	277	29	98	0	FALSE	ACH-000870
NCIH1930_LUNG	AC005307.3--AC005616.1	2	0	AC005307.3	5855	chr19:29212861:-	AC005616.1	22332	chr19:28983930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	AC005307.3->chr19:28926295-29218684:-,AC005616.1->chr19:28982771-29123635:-	NCIH1930_LUNG	1	1	0.0271	TRUE	0	2	0	3	2	TRUE	ACH-000870
NCIH1930_LUNG	CPSF6--VAC14	2	0	CPSF6	11046	chr12:69656342:+	VAC14	42831	chr16:70721993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,VAC14->Oncogene{Bushman},Vac14,_PIKFYVE_complex_component,chr16:70721342-70835064:-	NCIH1930_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH1930_LUNG	1	1	0.0271	TRUE	0	9	0	44	1	FALSE	ACH-000870
NCIH1930_LUNG	JARID2--RNF182	2	0	JARID2	1289	chr6:15246815:+	RNF182	31113	chr6:13974441:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,RNF182->chr6:13924677-13980533:+,ring_finger_protein_182	NCIH1930_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	NOS1AP--FCRLB	2	0	NOS1AP	2581	chr1:162124266:+	FCRLB	27591	chr1:161695611:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	NOS1AP->chr1:162039564-162353321:+,nitric_oxide_synthase_1_adaptor_protein,FCRLB->Fc_receptor_like_B,chr1:161691353-161697933:+	NCIH1930_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1930_LUNG	1	1	0.0271	FALSE	25	145	6	90	0	FALSE	ACH-000870
NCIH1930_LUNG	RCBTB2--LINC00441	2	0	RCBTB2	5348	chr13:49089341:-	LINC00441	21444	chr13:48876628:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	RCBTB2->RCC1_and_BTB_domain_containing_protein_2,chr13:49063095-49107369:-,LINC00441->chr13:48870649-48877797:-,long_intergenic_non-protein_coding_RNA_441	NCIH1930_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	RNF212--CTBP1	2	0	RNF212	6789	chr4:1090553:-	CTBP1	25519	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[97886],RNF212->chr4:1050038-1107350:-,ring_finger_protein_212,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH1930_LUNG	1	1	0.0271	TRUE	1	6	0	5	1	TRUE	ACH-000870
NCIH1930_LUNG	SGSM2--GNAS	2	0	SGSM2	2324	chr17:2246914:+	GNAS	38459	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	SGSM2->chr17:2240792-2284352:+,small_G_protein_signaling_modulator_2,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1930_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	TCF4--RANBP9	2	0	TCF4	19714	chr18:53070685:-	RANBP9	59154	chr6:13697128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	TCF4->chr18:52889562-53332018:-,transcription_factor_4,RANBP9->RAN_binding_protein_9,chr6:13621730-13711796:-	NCIH1930_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000870
NCIH1930_LUNG	AC027612.3--AP000345.1	1	2	AC027612.3	3881	chr2:91893844:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	NO	2	0	0.6	1	0.0135	0.0271	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH1930_LUNG	0.6	1	0.0406	TRUE	0	0	0	11	0	TRUE	ACH-000870
NCIH1930_LUNG	AL109763.2--TMPRSS15	1	2	AL109763.2	3701	chr21:20110242:-	TMPRSS15	13875	chr21:19770646:-	ONLY_REF_SPLICE	NO	25	0	0.11	1	0.0135	0.0271	NEIGHBORS[75386],AL109763.2->chr21:19933583-20132321:-,TMPRSS15->chr21:19641433-19858197:-,transmembrane_protease,_serine_15	NCIH1930_LUNG	0.11	1	0.0406	FALSE	0	3	0	3	0	FALSE	ACH-000870
NCIH1930_LUNG	GDAP1--RP11-758M4.1	1	2	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	19325	chr8:75614614:+	ONLY_REF_SPLICE	NO	237	2	0.01	0.6	0.0135	0.0271	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH1930_LUNG	0.01	0.6	0.0406	FALSE	0	1	0	4	0	FALSE	ACH-000870
NCIH1930_LUNG	STX18-AS1--MSX1	1	2	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	3	1	0.5	0.75	0.0135	0.0271	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	NCIH1930_LUNG	0.5	0.75	0.0406	TRUE	37	101	7	40	0	FALSE	ACH-000870
NCIH1930_LUNG	TEN1--UNK	1	2	TEN1	3872	chr17:73982365:+	UNK	16323	chr17:73808193:+	ONLY_REF_SPLICE	YES	74	81	0.04	0.04	0.0135	0.0271	{Klijn_CCL:Lung=1},TEN1->TEN1_CST_complex_subunit,chr17:73975301-73996667:+,UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger	NCIH1930_LUNG	0.04	0.04	0.0406	TRUE	0	0	0	1	0	FALSE	ACH-000870
NCIH1930_LUNG	NLGN4X--RP11-733O18.1	1	1	NLGN4X	3229	chrX:6144676:-	RP11-733O18.1	24670	chrX:5587647:-	ONLY_REF_SPLICE	YES	94	0	0.02	1	0.0135	0.0135	NLGN4X->chrX:5758678-6146904:-,neuroligin_4,_X-linked,RP11-733O18.1->chrX:5571462-5644346:-	NCIH1930_LUNG	0.02	1	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000870
NCIH1930_LUNG	PHF6--CT45A1	1	1	PHF6	1215	chrX:133507497:+	CT45A1	19960	chrX:134852696:+	ONLY_REF_SPLICE	YES	116	17	0.02	0.11	0.0135	0.0135	PHF6->Oncogene{Bushman},PHD_finger_protein_6,chrX:133507283-133562820:+,CT45A1->cancer/testis_antigen_family_45,_member_A1,chrX:134847185-134857354:+	NCIH1930_LUNG	0.02	0.11	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000870
NCIH1930_LUNG	PVT1--SNTB1	1	1	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	27	23	0.07	0.08	0.0135	0.0135	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH1930_LUNG	0.07	0.08	0.027	TRUE	0	0	0	25	0	FALSE	ACH-000870
NCIH1930_LUNG	SOS2--MAP4K5	1	1	SOS2	25615	chr14:50596679:-	MAP4K5	36609	chr14:50971575:-	ONLY_REF_SPLICE	YES	47	39	0.04	0.05	0.0135	0.0135	SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-,MAP4K5->chr14:50885219-51027844:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_5	NCIH1930_LUNG	0.04	0.05	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000870
NCIH1930_LUNG	ZNF251--CHMP1A	1	1	ZNF251	3735	chr8:145979068:-	CHMP1A	15210	chr16:89713739:-	ONLY_REF_SPLICE	YES	41	181	0.05	0.01	0.0135	0.0135	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Aorta=1,Colon_-_Sigmoid=1,Cells_-_Transformed_fibroblasts=1,Brain_-_Amygdala=1},ZNF251->chr8:145946298-145981802:-,zinc_finger_protein_251,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH1930_LUNG	0.01	0.05	0.027	FALSE	3	5	0	3	0	FALSE	ACH-000870
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	1455	360	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	3	1	1	19.4576	4.8143	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	24.2719	TRUE	361	258	24	38	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	1337	661	NPM1	4640	chr5:170818803:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	YES	4701	0	0.3	1	17.8796	8.8395	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	26.7191	TRUE	0	0	0	6	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCMH1--NPM1	255	21	SCMH1	1096	chr1:41707731:-	NPM1	31152	chr5:170819714:+	ONLY_REF_SPLICE	YES	0	4504	1	0.06	3.4101	0.2808	SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila),NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	3.6909	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YTHDF2--TAF12	128	74	YTHDF2	7260	chr1:29070498:+	TAF12	14624	chr1:28948677:-	ONLY_REF_SPLICE	YES	112	2	0.64	0.99	1.7117	0.9896	LOCAL_INVERSION:+:-:[93536],YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.99	2.7013	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	106	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4175	0.2808	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.6983	TRUE	508	994	45	981	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	16	366	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	5570	chr1:149591759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.214	4.8945	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	5.1085	TRUE	361	258	24	38	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	65	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	162	4	0.3	0.95	0.8692	0.0535	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.95	0.9227	TRUE	519	3926	326	965	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFYVE27--C10orf76	54	29	ZFYVE27	4832	chr10:99504672:+	C10orf76	42220	chr10:103649247:-	ONLY_REF_SPLICE	YES	98	32	0.46	0.72	0.7221	0.3878	ZFYVE27->chr10:99496878-99520664:+,zinc_finger_FYVE-type_containing_27,C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.72	1.1099	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	56	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7489	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7489	TRUE	0	0	0	518	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	20	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2675	0.0535	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.321	FALSE	462	80	0	856	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	12	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1605	0.0802	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2407	TRUE	477	1352	189	275	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	13	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	4	1	0.78	0.1738	0.0134	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.1872	TRUE	347	1186	183	220	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EWSR1--EMID1	11	0	EWSR1	1341	chr22:29664338:+	EMID1	30309	chr22:29627009:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1471	0	LOCAL_REARRANGEMENT:+:[8412],EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,EMID1->EMI_domain_containing_1,chr22:29601840-29655586:+	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1471	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	9	4	LINC00299	17125	chr2:8200478:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.1204	0.0535	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1739	TRUE	20	19	0	15	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1337	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1337	TRUE	0	0	0	434	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	7	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	61	37	0.23	0.33	0.0936	0.1471	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.33	0.2407	TRUE	267	562	48	632	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFYVE27--C10orf76	7	10	ZFYVE27	2403	chr10:99498431:+	C10orf76	42220	chr10:103649247:-	ONLY_REF_SPLICE	YES	132	32	0.11	0.35	0.0936	0.1337	ZFYVE27->chr10:99496878-99520664:+,zinc_finger_FYVE-type_containing_27,C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.35	0.2273	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	7	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	59	37	0.21	0.3	0.0936	0.1204	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.3	0.214	TRUE	267	562	48	632	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	9	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	5153	0	0	1	0.1204	0.0134	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1338	TRUE	0	0	0	100	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	7	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0936	0.0267	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1203	TRUE	0	1	0	84	1	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	7	1	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0936	0.0134	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.107	TRUE	67	49	0	25	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EWSR1--EMID1	7	0	EWSR1	1341	chr22:29664338:+	EMID1	29245	chr22:29622479:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0936	0	LOCAL_REARRANGEMENT:+:[8412],EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,EMID1->EMI_domain_containing_1,chr22:29601840-29655586:+	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0936	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0936	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0936	FALSE	231	204	14	283	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0802	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0802	FALSE	462	80	0	856	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	6	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0802	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0802	TRUE	0	0	0	434	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0535	0.0669	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1204	FALSE	462	80	0	856	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0669	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0669	FALSE	231	205	14	283	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	4	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0535	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0535	FALSE	0	0	0	189	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	9674	0	0	1	0.0401	0.0134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0535	FALSE	231	217	16	283	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--RHOA	3	0	C17orf76-AS1	1593	chr17:16342728:+	RHOA	16477	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0401	0	C17orf76-AS1->chr17:16342136-16381992:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0401	TRUE	0	0	0	4	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0401	FALSE	231	204	14	283	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TDRD9--CTD-2134A5.3	3	0	TDRD9	4779	chr14:104422107:+	CTD-2134A5.3	42550	chr14:104343732:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0401	0	LOCAL_REARRANGEMENT:+:[50984],TDRD9->chr14:104394799-104519004:+,tudor_domain_containing_9,CTD-2134A5.3->chr14:104341392-104343815:+	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	6	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0134	0.0802	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0936	TRUE	274	363	69	150	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	2	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	20	1	0.13	0.0267	0.0134	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.0401	TRUE	15	36	8	26	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PGS1--AC061992.2	2	1	PGS1	11842	chr17:76411108:+	AC061992.2	22551	chr17:76340046:+	ONLY_REF_SPLICE	YES	139	3	0.02	0.5	0.0267	0.0134	LOCAL_REARRANGEMENT:+:[30842],PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1,AC061992.2->chr17:76311810-76343879:+	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.5	0.0401	TRUE	0	0	0	1	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YTHDF2--TAF12	2	1	YTHDF2	2718	chr1:29064850:+	TAF12	14624	chr1:28948677:-	ONLY_REF_SPLICE	YES	239	2	0.01	0.6	0.0267	0.0134	LOCAL_INVERSION:+:-:[93536],YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.6	0.0401	FALSE	0	0	0	1	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABHD14B--GNB1	2	0	ABHD14B	2875	chr3:52007981:-	GNB1	12396	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	ABHD14B->abhydrolase_domain_containing_14B,chr3:52002526-52017425:-,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DBF4--ADAM22	2	0	DBF4	2736	chr7:87507540:+	ADAM22	24119	chr7:87737491:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	NEIGHBORS[24602],DBF4->DBF4_zinc_finger,chr7:87505531-87538856:+,ADAM22->ADAM_metallopeptidase_domain_22,chr7:87563458-87832204:+	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0267	FALSE	0	0	0	1	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLE4--RP11-355F16.1	2	0	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0267	TRUE	5	7	0	37	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--TMEM237	2	0	PROSC	2996	chr8:37623873:+	TMEM237	28917	chr2:202489045:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),TMEM237->chr2:202484907-202508293:-,transmembrane_protein_237	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB3GAP1--R3HDM1	2	0	RAB3GAP1	1221	chr2:135810055:+	R3HDM1	38095	chr2:136360070:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	RAB3GAP1->RAB3_GTPase_activating_protein_catalytic_subunit_1,chr2:135809835-135933964:+,R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YIPF6--BAZ1B	2	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0267	TRUE	1	23	1	24	8	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CWC25--RPL23	1	2	CWC25	2489	chr17:36977154:-	RPL23	16181	chr17:37009358:-	ONLY_REF_SPLICE	YES	40	23	0.07	0.12	0.0134	0.0267	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:-:[22384],CWC25->CWC25_spliceosome-associated_protein_homolog,chr17:36956687-36981734:-,RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.12	0.0401	TRUE	0	0	0	1	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	12710	chr5:95880920:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0134	0.0134	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0268	TRUE	0	2	0	2	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELL--FKBP8	1	1	ELL	1207	chr19:18632731:-	FKBP8	21177	chr19:18652805:-	ONLY_REF_SPLICE	YES	43	40	0.04	0.05	0.0134	0.0134	GTEx_FI:{Esophagus=[count:1=pct:0.2],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[9624],ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.05	0.0268	TRUE	2	2	0	6	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GDAP1--RP11-758M4.1	1	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	NO	28	0	0.07	1	0.0134	0.0134	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0268	TRUE	7	28	0	43	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--PRPF6	1	1	RPS3	2292	chr11:75111821:+	PRPF6	31103	chr20:62660730:+	ONLY_REF_SPLICE	YES	3322	629	0	0	0.0134	0.0134	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,PRPF6->chr20:62612488-62664453:+,pre-mRNA_processing_factor_6	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000773
KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP36--ZNF395	1	1	USP36	19144	chr17:76802238:-	ZNF395	35864	chr8:28232899:-	ONLY_REF_SPLICE	YES	112	88	0.02	0.02	0.0134	0.0134	USP36->chr17:76783463-76837523:-,ubiquitin_specific_peptidase_36,ZNF395->chr8:28203102-28260218:-,zinc_finger_protein_395	KIJK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.0268	TRUE	0	0	0	1	0	FALSE	ACH-000773
SW1088_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	10	3	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1958	0.0587	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.2545	TRUE	508	994	45	981	0	FALSE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	5	18	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	NO	514	0	0.04	1	0.0979	0.3525	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW1088_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.4504	FALSE	344	827	44	306	0	FALSE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	ITGA4--AC068196.1	8	3	ITGA4	16541	chr2:182363504:+	AC068196.1	36971	chr2:181941351:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.1567	0.0587	ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4,AC068196.1->chr2:181940778-181970695:-	SW1088_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.2154	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	AKT3--GPM6A	5	0	AKT3	13142	chr1:243858893:-	GPM6A	53083	chr4:176622918:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0979	0	AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,GPM6A->chr4:176554085-176923815:-,glycoprotein_M6A	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0979	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	NDFIP1--RAVER1	4	0	NDFIP1	11587	chr5:141531466:+	RAVER1	23386	chr19:10431872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0783	0	NDFIP1->Nedd4_family_interacting_protein_1,chr5:141488070-141534005:+,RAVER1->chr19:10426888-10444316:-,ribonucleoprotein,_PTB_binding_1	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0783	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	PRRC2B--TNS3	4	0	PRRC2B	34814	chr9:134371929:+	TNS3	85895	chr7:47314953:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0783	0	PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,TNS3->chr7:47314752-47622156:-,tensin_3	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0783	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	SMEK1--RECQL	4	0	SMEK1	17994	chr14:91924549:-	RECQL	30929	chr12:21628722:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0783	0	SMEK1->chr14:91923955-91976898:-,RECQL->Oncogene{Bushman},RecQ_like_helicase,chr12:21621845-21654603:-	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0783	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	CAPRIN1--POGZ	3	0	CAPRIN1	1954	chr11:34074183:+	POGZ	29523	chr1:151414681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0587	0	CAPRIN1->cell_cycle_associated_protein_1,chr11:34073230-34122703:+,POGZ->chr1:151375200-151431941:-,pogo_transposable_element_with_ZNF_domain	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	CLTB--NCOR1	3	0	CLTB	6883	chr5:175824608:-	NCOR1	45298	chr17:15983327:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	CLTB->chr5:175819456-175843570:-,clathrin_light_chain_B,NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	CYB5A--RPL14	3	0	CYB5A	3257	chr18:71930585:-	RPL14	17644	chr3:40503106:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	CYB5A->chr18:71920530-71959251:-,cytochrome_b5_type_A,RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	HIP1--VASP	3	0	HIP1	15702	chr7:75190671:-	VASP	42936	chr19:46024583:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	HIP1->Oncogene{Bushman},chr7:75162621-75368280:-,huntingtin_interacting_protein_1,VASP->chr19:46009837-46030241:+,vasodilator-stimulated_phosphoprotein	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	HNRNPU--FAM207A	3	0	HNRNPU	11994	chr1:245016851:-	FAM207A	21986	chr21:46386978:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	HNRNPU->chr1:245014468-245027844:-,heterogeneous_nuclear_ribonucleoprotein_U_(scaffold_attachment_factor_A),FAM207A->chr21:46359925-46396904:+,family_with_sequence_similarity_207_member_A	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	MPRIP--FOXRED2	3	0	MPRIP	46162	chr17:17104963:+	FOXRED2	60021	chr22:36885492:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,FOXRED2->FAD_dependent_oxidoreductase_domain_containing_2,chr22:36883237-36903148:-	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	S100A6--SP1	3	0	S100A6	2607	chr1:153507114:-	SP1	7130	chr12:53775443:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	SLC1A5--DYNC1LI2	3	0	SLC1A5	9676	chr19:47278326:-	DYNC1LI2	13091	chr16:66785473:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,DYNC1LI2->chr16:66754796-66785701:-,dynein_cytoplasmic_1_light_intermediate_chain_2	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	SPTBN1--MSN	3	0	SPTBN1	23096	chr2:54858238:+	MSN	68294	chrX:64957105:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1,MSN->Oncogene{Bushman},chrX:64808257-64961791:+,moesin	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	C7orf10--PSMA2	2	0	C7orf10	20736	chr7:40789096:+	PSMA2	29643	chr7:42967058:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	C7orf10->chr7:40174575-40900362:+,PSMA2->chr7:42948872-42971773:-,chr7:42956460-42971822:-,proteasome_subunit_alpha_2	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	CDC42SE2--AFF4	2	0	CDC42SE2	5200	chr5:130599859:+	AFF4	27885	chr5:132240096:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,AFF4->AF4/FMR2_family_member_4,Oncogene{Bushman},chr5:132211071-132299326:-	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	CHCHD1--SLC12A2	2	0	CHCHD1	1395	chr10:75542199:+	SLC12A2	7552	chr5:127448506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	CHCHD1->chr10:75541805-75543410:+,coiled-coil-helix-coiled-coil-helix_domain_containing_1,SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	COA1--RPE	2	0	COA1	1289	chr7:43769028:-	RPE	28206	chr2:210874381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,RPE->chr2:210867289-210886300:+,ribulose-5-phosphate-3-epimerase	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	DECR1--YTHDF3	2	0	DECR1	8619	chr8:91033284:+	YTHDF3	28252	chr8:64122241:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	DECR1->2,4-dienoyl-CoA_reductase_1,_mitochondrial,chr8:91013633-91064320:+,YTHDF3->YTH_N6-methyladenosine_RNA_binding_protein_3,chr8:64081112-64125346:+	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	FKBP1A--PBX1	2	0	FKBP1A	1329	chr20:1373478:-	PBX1	56696	chr1:164853779:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	FKBP1A->FK506_binding_protein_1A,chr20:1349622-1373806:-,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	LPIN1--KLHL24	2	0	LPIN1	11617	chr2:11907984:+	KLHL24	55432	chr3:183396874:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},LPIN1->chr2:11817721-11967535:+,lipin_1,KLHL24->chr3:183353356-183402265:+,kelch_like_family_member_24	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	LRRC59--EIF4A3	2	0	LRRC59	5125	chr17:48469759:-	EIF4A3	19368	chr17:78113939:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	LRRC59->chr17:48452420-48474914:-,leucine_rich_repeat_containing_59,EIF4A3->chr17:78109013-78120982:-,eukaryotic_translation_initiation_factor_4A3	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	NHP2L1--AP1B1	2	0	NHP2L1	2186	chr22:42084798:-	AP1B1	31176	chr22:29730399:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	NHP2L1->chr22:42069934-42086508:-,AP1B1->adaptor_related_protein_complex_1_beta_1_subunit,chr22:29723669-29819168:-	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	PLXNA4--EXOC4	2	0	PLXNA4	7628	chr7:132174051:-	EXOC4	57107	chr7:132990631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	GTEx&tcga_normals:1/3694=0.03%,PLXNA4->chr7:131808091-132333447:-,plexin_A4,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	PTGR1--FRG1	2	0	PTGR1	4736	chr9:114355206:-	FRG1	24170	chr4:190876192:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1,FRG1->FSHD_region_gene_1,chr4:190861943-190884359:+	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	RCC1--GNB2L1	2	0	RCC1	2175	chr1:28834672:+	GNB2L1	22715	chr5:180669345:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	1	0	1	1	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	SAR1B--PRIMPOL	2	0	SAR1B	7839	chr5:133956623:-	PRIMPOL	35267	chr4:185606566:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	SAR1B->chr5:133936834-133984961:-,secretion_associated_Ras_related_GTPase_1B,PRIMPOL->chr4:185570767-185616117:+,primase_and_DNA_directed_polymerase	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	STK39--FUS	2	0	STK39	16851	chr2:168869144:-	FUS	30867	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	TNRC6A--PSMB1	2	0	TNRC6A	1606	chr16:24741621:+	PSMB1	37773	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	TNRC6A->chr16:24741016-24838953:+,trinucleotide_repeat_containing_6A,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	UBE2K--ADD1	2	0	UBE2K	1347	chr4:39700010:+	ADD1	26109	chr4:2895740:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,ADD1->adducin_1,chr4:2845584-2931803:+	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	ZMYM6--PSMD1	2	0	ZMYM6	8510	chr1:35480298:-	PSMD1	36563	chr2:231941748:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	ZMYM6->chr1:35447134-35497342:-,chr1:35449523-35497569:-,zinc_finger_MYM-type_containing_6,PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1	SW1088_CENTRAL_NERVOUS_SYSTEM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000437
SW1088_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	2	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	6	1	0.33	0.0196	0.0392	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SW1088_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.0588	FALSE	2	31	0	60	0	FALSE	ACH-000437
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	125	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4363	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	1.4363	FALSE	369	2501	205	193	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	70	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8044	0.2873	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	1.0917	TRUE	508	994	45	981	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	63	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7239	0.1034	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.8273	FALSE	462	80	0	856	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	57	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.655	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.655	FALSE	230	193	14	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-ND5	53	11	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	4314	1	0.01	0.609	0.1264	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HSC4_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.7354	FALSE	101	855	57	72	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	197	MT-ND4	1483	chrM:11242:+	MT-ND4L	5492	chrM:10583:+	INCL_NON_REF_SPLICE	YES	1382	0	0.13	1	0.0345	2.2637	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	0.13	1	2.2982	FALSE	344	827	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	138	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	7	0	0.95	1	0.1149	1.5857	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	0.95	1	1.7006	FALSE	344	821	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	159	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	9	0	0.95	1	0.0345	1.827	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	0.95	1	1.8615	FALSE	344	826	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	41	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	184	7	0.19	0.86	0.4711	0.023	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HSC4_UPPER_AERODIGESTIVE_TRACT	0.19	0.86	0.4941	TRUE	519	3926	326	965	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	131	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	10658	0	0.01	1	0.0919	1.5053	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	0.01	1	1.5972	FALSE	344	827	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	38	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.4366	0.046	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC4_UPPER_AERODIGESTIVE_TRACT	0.98	1	0.4826	FALSE	499	1288	110	792	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	133	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	21	0	0.87	1	0.0345	1.5283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	0.87	1	1.5628	FALSE	344	826	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	118	MT-ND4	1060	chrM:10819:+	MT-ND4L	5532	chrM:10623:+	INCL_NON_REF_SPLICE	YES	7	0	0.95	1	0.0345	1.3559	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	0.95	1	1.3904	FALSE	344	821	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	11	74	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1264	0.8503	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.9767	FALSE	369	2501	205	193	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	16	47	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1839	0.5401	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.724	FALSE	369	2501	205	193	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	13	58	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1494	0.6665	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.8159	FALSE	369	2501	205	193	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	16	43	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	17374	0	0	1	0.1839	0.4941	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.678	FALSE	328	800	43	304	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	26	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2988	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.2988	FALSE	369	2501	205	193	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	22	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.2528	0.1724	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC4_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.4252	FALSE	499	1288	110	792	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	17	24	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1953	0.2758	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.4711	FALSE	369	2501	205	193	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	30	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2164	0	0.02	1	0.1724	0.3447	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	0.02	1	0.5171	FALSE	344	827	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	20	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2298	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.2298	FALSE	369	2501	205	193	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	18	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2068	0.023	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.2298	FALSE	416	2512	207	587	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	29	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	83	0	0.32	1	0.1149	0.3332	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	0.32	1	0.4481	FALSE	344	826	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	15	9	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1724	0.1034	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.2758	FALSE	462	80	0	856	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	FBXO34--C14orf39	12	20	FBXO34	1235	chr14:55738255:+	C14orf39	30060	chr14:60908849:-	ONLY_REF_SPLICE	YES	65	0	0.33	1	0.1379	0.2298	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,C14orf39->chr14:60863187-60982261:-,chromosome_14_open_reading_frame_39	HSC4_UPPER_AERODIGESTIVE_TRACT	0.33	1	0.3677	TRUE	0	0	0	1	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	43	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1950	0	0.02	1	0.0689	0.4941	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	0.02	1	0.563	FALSE	344	827	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	30	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1313	0	0.03	1	0.1034	0.3447	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	0.03	1	0.4481	FALSE	344	827	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	52	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	7	0	0.89	1	0.0345	0.5975	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	0.89	1	0.632	FALSE	344	821	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	5	44	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0.5056	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.5631	FALSE	369	2501	205	193	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	46	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.046	0.5286	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.5746	FALSE	344	821	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	13	7	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3305	94	0.01	0.18	0.1494	0.0804	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0.01	0.18	0.2298	FALSE	216	209	16	281	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	14	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1609	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.1609	FALSE	230	198	14	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	14	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1609	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.1609	FALSE	231	205	14	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	13	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1494	0.046	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC4_UPPER_AERODIGESTIVE_TRACT	0.94	1	0.1954	FALSE	499	1288	110	792	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	8	24	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0919	0.2758	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.3677	FALSE	369	2501	205	193	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-ND5	11	11	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	4131	1	0.01	0.1264	0.1264	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HSC4_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.2528	FALSE	101	855	57	72	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-CO1--MT-RNR2	9	13	MT-CO1	1653	chrM:6556:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	38516	0	0	1	0.1034	0.1494	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HSC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.2528	FALSE	44	51	6	21	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	12	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1379	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.1379	FALSE	351	233	23	137	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	GNGT1--AC002076.10	11	3	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1264	0.0345	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	HSC4_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.1609	FALSE	0	28	0	37	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	HDAC1--RP5-1180C18.1	10	7	HDAC1	3583	chr1:32782383:+	RP5-1180C18.1	16077	chr1:37741860:-	ONLY_REF_SPLICE	YES	164	0	0.09	1	0.1149	0.0804	HDAC1->chr1:32757687-32799236:+,histone_deacetylase_1,RP5-1180C18.1->chr1:37728340-37790701:-	HSC4_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.1953	TRUE	0	0	0	1	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-ND5	9	10	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	2217	1	0.01	0.1034	0.1149	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HSC4_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.2183	FALSE	101	855	57	72	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	FBXO34--C14orf39	9	8	FBXO34	1235	chr14:55738255:+	C14orf39	33210	chr14:60900131:-	ONLY_REF_SPLICE	YES	65	0	0.21	1	0.1034	0.0919	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,C14orf39->chr14:60863187-60982261:-,chromosome_14_open_reading_frame_39	HSC4_UPPER_AERODIGESTIVE_TRACT	0.21	1	0.1953	TRUE	0	0	0	1	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-CO1--MT-RNR2	5	23	MT-CO1	2223	chrM:7126:+	MT-RNR2	5562	chrM:1690:+	INCL_NON_REF_SPLICE	YES	26977	0	0	1	0.0575	0.2643	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HSC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.3218	FALSE	44	51	6	21	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0689	0.1953	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC4_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.2642	FALSE	499	1288	110	792	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-CO1--MT-RNR2	8	8	MT-CO1	1704	chrM:6607:+	MT-RNR2	6119	chrM:2247:+	INCL_NON_REF_SPLICE	YES	37433	18482	0	0	0.0919	0.0919	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HSC4_UPPER_AERODIGESTIVE_TRACT	0	0	0.1838	FALSE	44	51	6	21	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-ND5	10	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1149	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.1149	FALSE	101	855	57	72	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	24	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.046	0.2758	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC4_UPPER_AERODIGESTIVE_TRACT	0.97	1	0.3218	FALSE	499	1288	110	792	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	22	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.046	0.2528	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC4_UPPER_AERODIGESTIVE_TRACT	0.93	1	0.2988	FALSE	499	1288	110	792	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	9	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1034	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.1034	FALSE	230	193	14	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-CO1--MT-RNR2	7	7	MT-CO1	1536	chrM:6439:+	MT-RNR2	6107	chrM:2235:+	INCL_NON_REF_SPLICE	NO	35803	18993	0	0	0.0804	0.0804	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HSC4_UPPER_AERODIGESTIVE_TRACT	0	0	0.1608	FALSE	44	51	6	21	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	23	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	69	0	0.27	1	0.0345	0.2643	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	0.27	1	0.2988	FALSE	344	826	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	8	2	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	24545	0	0	1	0.0919	0.023	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.1149	FALSE	231	217	16	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-CO1--MT-RNR2	3	21	MT-CO1	1937	chrM:6840:+	MT-RNR2	5550	chrM:1678:+	INCL_NON_REF_SPLICE	YES	38553	0	0	1	0.0345	0.2413	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HSC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.2758	FALSE	44	51	6	21	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	6	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0.1034	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.1723	FALSE	462	80	0	856	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	8	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	49	1	0.16	0.0919	0.0115	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HSC4_UPPER_AERODIGESTIVE_TRACT	0.16	1	0.1034	TRUE	465	1949	224	605	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	KRT5--MT-CO3	8	0	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0919	0	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0919	FALSE	0	0	0	18	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	12	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	190	0	0.08	1	0.0575	0.1379	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	0.08	1	0.1954	FALSE	344	827	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	8	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0919	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0919	FALSE	369	2501	205	193	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-ND5	6	7	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	3	2192	0.81	0.01	0.0689	0.0804	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HSC4_UPPER_AERODIGESTIVE_TRACT	0.01	0.81	0.1493	FALSE	101	855	57	72	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MEAF6--THRAP3	5	10	MEAF6	4810	chr1:37967405:-	THRAP3	15747	chr1:36748134:+	ONLY_REF_SPLICE	YES	130	167	0.1	0.08	0.0575	0.1149	MEAF6->MYST/Esa1_associated_factor_6,chr1:37958176-37980375:-,THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3	HSC4_UPPER_AERODIGESTIVE_TRACT	0.08	0.1	0.1724	TRUE	0	0	0	1	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	CTD-2152M20.2--GOLPH3	7	1	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	74	1	0.1	0.0804	0.0115	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	HSC4_UPPER_AERODIGESTIVE_TRACT	0.1	1	0.0919	TRUE	10	26	2	24	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-CO1--MT-RNR2	4	13	MT-CO1	1625	chrM:6528:+	MT-RNR2	5573	chrM:1701:+	INCL_NON_REF_SPLICE	YES	35868	0	0	1	0.046	0.1494	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HSC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.1954	FALSE	44	51	6	21	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	9	MT-ND4	2153	chrM:11912:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	12587	0	0	1	0.0575	0.1034	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.1609	FALSE	231	215	16	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	6	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21945	94	0	0.1	0.0689	0.0575	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0	0.1	0.1264	FALSE	231	217	16	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	AC092594.1--CNTN1	7	0	AC092594.1	2337	chr2:19505584:-	CNTN1	22580	chr12:41289752:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0804	0	AC092594.1->chr2:19167729-19546509:-,CNTN1->chr12:41086244-41466220:+,contactin_1	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0804	TRUE	0	1	0	1	1	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-CO1--MT-RNR2	5	8	MT-CO1	1699	chrM:6602:+	MT-RNR2	6113	chrM:2241:+	INCL_NON_REF_SPLICE	NO	37947	18842	0	0	0.0575	0.0919	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HSC4_UPPER_AERODIGESTIVE_TRACT	0	0	0.1494	FALSE	44	51	6	21	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	8	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	22286	0	0	1	0.0575	0.0919	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.1494	FALSE	231	217	16	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	7	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0804	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0804	FALSE	231	204	14	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-CO1--MT-RNR2	3	13	MT-CO1	1617	chrM:6520:+	MT-RNR2	5563	chrM:1691:+	INCL_NON_REF_SPLICE	YES	35186	0	0	1	0.0345	0.1494	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HSC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.1839	FALSE	44	51	6	21	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	6	1	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	25079	94	0	0.07	0.0689	0.0115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0	0.07	0.0804	FALSE	231	217	16	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-CO1--MT-RNR2	3	12	MT-CO1	1980	chrM:6883:+	MT-RNR2	6135	chrM:2263:+	INCL_NON_REF_SPLICE	YES	36702	18717	0	0	0.0345	0.1379	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HSC4_UPPER_AERODIGESTIVE_TRACT	0	0	0.1724	FALSE	44	51	6	21	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-CO1--MT-RNR2	5	4	MT-CO1	1318	chrM:6221:+	MT-RNR2	6133	chrM:2261:+	INCL_NON_REF_SPLICE	YES	30416	18766	0	0	0.0575	0.046	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HSC4_UPPER_AERODIGESTIVE_TRACT	0	0	0.1035	FALSE	44	51	6	21	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	22624	6	0	0.6	0.0575	0.046	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0	0.6	0.1035	FALSE	231	217	16	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0689	FALSE	344	821	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-ND5	4	8	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	1	678	0.92	0.02	0.046	0.0919	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HSC4_UPPER_AERODIGESTIVE_TRACT	0.02	0.92	0.1379	FALSE	101	855	57	72	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	6	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0689	FALSE	369	2501	205	193	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0689	FALSE	369	2501	205	193	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	6	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0689	FALSE	369	2501	205	193	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	6	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0689	TRUE	0	0	0	434	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	21945	2065	0	0	0.0575	0.0345	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0	0	0.092	FALSE	231	217	16	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	6	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20291	94	0	0.1	0.046	0.0689	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0	0.1	0.1149	FALSE	231	217	16	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	24579	0	0	1	0.0575	0.023	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.0805	FALSE	231	217	16	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	9	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1781	0	0.01	1	0.0345	0.1034	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.1379	FALSE	216	209	16	281	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND6	4	5	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	4283	1	0	0.046	0.0575	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HSC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.1035	FALSE	26	124	4	93	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	9	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.0345	0.1034	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC4_UPPER_AERODIGESTIVE_TRACT	0.86	1	0.1379	FALSE	499	1288	110	792	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0575	FALSE	230	198	14	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0575	FALSE	462	80	0	856	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-CO1--MT-RNR2	3	7	MT-CO1	1453	chrM:6356:+	MT-RNR2	6134	chrM:2262:+	INCL_NON_REF_SPLICE	YES	34804	18669	0	0	0.0345	0.0804	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HSC4_UPPER_AERODIGESTIVE_TRACT	0	0	0.1149	FALSE	44	51	6	21	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	7	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19700	94	0	0.1	0.0345	0.0804	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0	0.1	0.1149	FALSE	231	215	16	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	3	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	NO	22252	0	0	1	0.046	0.0345	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.0805	FALSE	231	217	16	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	PCAT1--RP11-382A18.2	4	3	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0.0345	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0805	TRUE	4	84	1	46	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	4	2	MT-ND3	1290	chrM:10348:+	MT-ATP8	4418	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0.023	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.069	FALSE	351	233	23	137	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	2	MT-ND4	1521	chrM:11280:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	26475	692	0	0.01	0.046	0.023	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.069	FALSE	231	217	16	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	6	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	22514	0	0	1	0.0345	0.0689	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.1034	FALSE	231	217	16	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	FOXO1--RP11-172E9.2	4	1	FOXO1	2015	chr13:41239720:-	RP11-172E9.2	12287	chr13:40924439:-	INCL_NON_REF_SPLICE	YES	27	0	0.16	1	0.046	0.0115	FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,RP11-172E9.2->chr13:40918094-40924440:-	HSC4_UPPER_AERODIGESTIVE_TRACT	0.16	1	0.0575	TRUE	0	0	0	3	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	1	MT-ND4	1394	chrM:11153:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	25168	0	0	1	0.046	0.0115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.0575	FALSE	231	217	16	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	7	0	0.42	1	0.046	0.0115	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	0.42	1	0.0575	FALSE	344	821	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	22	1	0.19	0.046	0.0115	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HSC4_UPPER_AERODIGESTIVE_TRACT	0.19	1	0.0575	TRUE	458	1351	185	561	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	4	0	MT-ND3	1053	chrM:10111:+	MT-ATP8	4482	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.046	FALSE	351	233	23	137	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.046	FALSE	231	204	14	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	0	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.046	FALSE	230	191	14	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	4	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	22288	951	0	0.01	0.0345	0.046	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0805	FALSE	231	217	16	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.046	FALSE	344	821	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0.0345	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.069	FALSE	344	821	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	DHX35--PPP1R16B	3	2	DHX35	5539	chr20:37617560:+	PPP1R16B	30346	chr20:37464468:+	ONLY_REF_SPLICE	YES	50	0	0.09	1	0.0345	0.023	LOCAL_REARRANGEMENT:+:[39275],DHX35->DEAH-box_helicase_35,chr20:37590942-37668366:+,PPP1R16B->Oncogene{Bushman},chr20:37434348-37551667:+,protein_phosphatase_1_regulatory_subunit_16B	HSC4_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1540	chrM:11299:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	26792	94	0	0.05	0.0345	0.023	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	0	0.05	0.0575	FALSE	231	217	16	283	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	RP11-108K3.1--GLDN	2	6	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0.0689	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0919	FALSE	0	19	0	46	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	RP11-108K3.1--GLDN	2	6	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0.0689	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0919	FALSE	0	14	0	30	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	RP11-494M8.4--OVCH2	3	1	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0345	0.0115	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	HSC4_UPPER_AERODIGESTIVE_TRACT	0.57	1	0.046	FALSE	60	13	8	23	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	CMTM8--CMTM7	3	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0345	FALSE	118	557	29	88	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	FOXO1--LINC00598	3	0	FOXO1	2015	chr13:41239720:-	LINC00598	13384	chr13:41048232:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	NEIGHBORS[74661],FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,LINC00598->chr13:41025131-41055143:-,long_intergenic_non-protein_coding_RNA_598	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0345	FALSE	0	0	1	4	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	HDAC1--RP5-1180C18.1	3	0	HDAC1	3583	chr1:32782383:+	RP5-1180C18.1	18346	chr1:37728555:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	HDAC1->chr1:32757687-32799236:+,histone_deacetylase_1,RP5-1180C18.1->chr1:37728340-37790701:-	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	3	0	MT-ND3	1293	chrM:10351:+	MT-ATP8	4465	chrM:8484:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0345	FALSE	351	233	23	137	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0345	FALSE	344	821	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1007	chrM:10766:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0345	FALSE	344	821	44	306	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0345	FALSE	499	1288	110	792	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0345	FALSE	499	1288	110	792	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	NDC80--HIF1A	3	0	NDC80	4483	chr18:2577356:+	HIF1A	39781	chr14:62211423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	GTEx_FI:{Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Cells_-_Transformed_fibroblasts=4,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Lung=1,Artery_-_Coronary=1,Esophagus_-_Muscularis=1},NDC80->NDC80_kinetochore_complex_component,chr18:2571510-2616634:+,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0345	TRUE	2	27	1	8	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	GNGT1--AC002076.10	2	3	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	NO	3	0	0.62	1	0.023	0.0345	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	HSC4_UPPER_AERODIGESTIVE_TRACT	0.62	1	0.0575	FALSE	0	10	0	30	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	RP11-494M8.4--OVCH2	1	6	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0115	0.0689	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	HSC4_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.0804	FALSE	32	0	0	22	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	RP11-108K3.1--GLDN	1	5	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0115	0.0575	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.069	FALSE	0	30	1	55	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	STAG2--XIAP	2	1	STAG2	2645	chrX:123095706:+	XIAP	50132	chrX:123022469:+	ONLY_REF_SPLICE	YES	57	31	0.05	0.09	0.023	0.0115	LOCAL_REARRANGEMENT:+:[46233],STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,XIAP->X-linked_inhibitor_of_apoptosis,chrX:122993574-123047829:+	HSC4_UPPER_AERODIGESTIVE_TRACT	0.05	0.09	0.0345	TRUE	0	0	0	1	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	NOTCH2NL--RHOA	2	0	NOTCH2NL	1318	chr1:145209436:+	RHOA	20430	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	PCDH7--RP11-617I14.1	2	0	PCDH7	8615	chr4:30921991:+	RP11-617I14.1	20426	chr4:31178243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	NEIGHBORS[24344],PCDH7->chr4:30722037-31148422:+,protocadherin_7,RP11-617I14.1->chr4:31172766-31213297:+	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.023	FALSE	3	3	0	2	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	RP11-624L4.1--RP11-265N7.1	2	0	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.023	FALSE	0	20	1	20	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	STAG2--XIAP	2	0	STAG2	1655	chrX:123094716:+	XIAP	50132	chrX:123022469:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	LOCAL_REARRANGEMENT:+:[46233],STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,XIAP->X-linked_inhibitor_of_apoptosis,chrX:122993574-123047829:+	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	ZNF131--CCDC152	2	0	ZNF131	15576	chr5:43139411:+	CCDC152	34461	chr5:42796931:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	ZNF131->chr5:43065278-43192123:+,zinc_finger_protein_131,CCDC152->chr5:42756903-42802462:+,coiled-coil_domain_containing_152	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	DPH5--SLC25A24P1	1	3	DPH5	4639	chr1:101487197:-	SLC25A24P1	26130	chr1:108918448:+	ONLY_REF_SPLICE	YES	51	0	0.07	1	0.0115	0.0345	DPH5->chr1:101455179-101491644:-,diphthamide_biosynthesis_5,SLC25A24P1->SLC25A24_pseudogene_1,chr1:108815565-108918572:+	HSC4_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.046	TRUE	0	0	0	1	0	TRUE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	HDAC1--RP5-1180C18.1	1	3	HDAC1	3583	chr1:32782383:+	RP5-1180C18.1	17199	chr1:37736203:-	ONLY_REF_SPLICE	YES	164	0	0.02	1	0.0115	0.0345	HDAC1->chr1:32757687-32799236:+,histone_deacetylase_1,RP5-1180C18.1->chr1:37728340-37790701:-	HSC4_UPPER_AERODIGESTIVE_TRACT	0.02	1	0.046	TRUE	0	0	0	1	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	RP11-155G15.2--RP11-1E3.1	1	2	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0.023	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HSC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0345	FALSE	46	201	11	112	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	87	1	0.02	0.0115	0.0115	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HSC4_UPPER_AERODIGESTIVE_TRACT	0.02	1	0.023	TRUE	64	13	3	59	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	RPS3--ACY1	1	1	RPS3	2292	chr11:75111821:+	ACY1	16349	chr3:52018063:+	ONLY_REF_SPLICE	NO	4593	64	0	0.03	0.0115	0.0115	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,ACY1->aminoacylase_1,chr3:52009066-52023213:+	HSC4_UPPER_AERODIGESTIVE_TRACT	0	0.03	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	STAG2--XIAP	1	1	STAG2	2895	chrX:123095956:+	XIAP	50132	chrX:123022469:+	ONLY_REF_SPLICE	YES	61	31	0.03	0.06	0.0115	0.0115	LOCAL_REARRANGEMENT:+:[46233],STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,XIAP->X-linked_inhibitor_of_apoptosis,chrX:122993574-123047829:+	HSC4_UPPER_AERODIGESTIVE_TRACT	0.03	0.06	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000546
HSC4_UPPER_AERODIGESTIVE_TRACT	TMEM216--CLASP1	1	1	TMEM216	3290	chr11:61161448:+	CLASP1	48009	chr2:122154859:-	ONLY_REF_SPLICE	YES	110	38	0.02	0.05	0.0115	0.0115	TMEM216->chr11:61159159-61166335:+,transmembrane_protein_216,CLASP1->chr2:122095352-122407163:-,cytoplasmic_linker_associated_protein_1	HSC4_UPPER_AERODIGESTIVE_TRACT	0.02	0.05	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000546
MFE319_ENDOMETRIUM	C22orf39--UFD1L	338	219	C22orf39	1855	chr22:19434901:-	UFD1L	40186	chr22:19445662:-	ONLY_REF_SPLICE	YES	82	353	0.87	0.61	5.516	3.574	LOCAL_REARRANGEMENT:-:[1678],C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,UFD1L->chr22:19437433-19466738:-,ubiquitin_fusion_degradation_1_like_(yeast)	MFE319_ENDOMETRIUM	0.61	0.87	9.09	TRUE	0	1	0	2	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	MROH1--EXOSC4	182	53	MROH1	4066	chr8:145218751:+	EXOSC4	42866	chr8:145135145:+	ONLY_REF_SPLICE	YES	42	151	0.85	0.61	2.9702	0.8649	LOCAL_REARRANGEMENT:+:[67369],MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1,EXOSC4->chr8:145133529-145135550:+,exosome_component_4	MFE319_ENDOMETRIUM	0.61	0.85	3.8351	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	KIAA1671--SGSM1	83	1	KIAA1671	1043	chr22:25348739:+	SGSM1	56346	chr22:25301072:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	1.3545	0.0163	LOCAL_REARRANGEMENT:+:[25152],KIAA1671->KIAA1671,chr22:25348697-25593415:+,SGSM1->chr22:25202236-25323545:+,small_G_protein_signaling_modulator_1	MFE319_ENDOMETRIUM	0.99	1	1.3708	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	TIMM23B--LINC00843	57	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9302	0.2285	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MFE319_ENDOMETRIUM	1	1	1.1587	TRUE	508	994	45	981	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	C22orf39--UFD1L	3	222	C22orf39	3234	chr22:19431535:-	UFD1L	40186	chr22:19445662:-	INCL_NON_REF_SPLICE	YES	78	353	0.74	0.39	0.049	3.623	LOCAL_REARRANGEMENT:-:[1678],C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,UFD1L->chr22:19437433-19466738:-,ubiquitin_fusion_degradation_1_like_(yeast)	MFE319_ENDOMETRIUM	0.39	0.74	3.672	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	C22orf39--UFD1L	49	1	C22orf39	1568	chr22:19435188:-	UFD1L	40186	chr22:19445662:-	ONLY_REF_SPLICE	YES	0	353	1	0.12	0.7997	0.0163	LOCAL_REARRANGEMENT:-:[1678],C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,UFD1L->chr22:19437433-19466738:-,ubiquitin_fusion_degradation_1_like_(yeast)	MFE319_ENDOMETRIUM	0.12	1	0.816	TRUE	0	1	0	2	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	C22orf39--UFD1L	5	122	C22orf39	1855	chr22:19434901:-	UFD1L	41255	chr22:19444441:-	ONLY_REF_SPLICE	YES	82	243	0.61	0.34	0.0816	1.991	LOCAL_REARRANGEMENT:-:[1678],C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,UFD1L->chr22:19437433-19466738:-,ubiquitin_fusion_degradation_1_like_(yeast)	MFE319_ENDOMETRIUM	0.34	0.61	2.0726	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND6--MT-TE	34	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.5549	0.049	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE319_ENDOMETRIUM	0.97	1	0.6039	FALSE	499	1288	110	792	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	TIMM23--RP11-464F9.1	32	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	270	6	0.11	0.85	0.5222	0.049	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MFE319_ENDOMETRIUM	0.11	0.85	0.5712	TRUE	519	3926	326	965	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	PLXDC1--TAF13	31	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5059	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	MFE319_ENDOMETRIUM	1	1	0.5059	TRUE	7	10	0	216	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	ZNF654--HMGB2	31	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5059	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MFE319_ENDOMETRIUM	1	1	0.5059	TRUE	0	0	0	518	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	UTRN--STX11	25	12	UTRN	2292	chr6:144613043:+	STX11	92330	chr6:144507760:+	ONLY_REF_SPLICE	YES	16	2	0.7	0.95	0.408	0.1958	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[97330],UTRN->chr6:144606837-145174170:+,utrophin,STX11->chr6:144471663-144509507:+,syntaxin_11	MFE319_ENDOMETRIUM	0.7	0.95	0.6038	TRUE	1	1	0	1	1	TRUE	ACH-000988
MFE319_ENDOMETRIUM	MT-TA--MT-TC	26	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4243	0.0326	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MFE319_ENDOMETRIUM	1	1	0.4569	FALSE	462	80	0	856	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	STK3--NIPAL2	22	15	STK3	14445	chr8:99761504:-	NIPAL2	40319	chr8:99266315:-	ONLY_REF_SPLICE	YES	13	3	0.74	0.93	0.359	0.2448	STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,NIPAL2->NIPA_like_domain_containing_2,chr8:99202061-99306621:-	MFE319_ENDOMETRIUM	0.74	0.93	0.6038	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND6--MT-TE	17	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.2774	0.049	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE319_ENDOMETRIUM	0.95	1	0.3264	FALSE	499	1288	110	792	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND6--MT-TE	14	14	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.2285	0.2285	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE319_ENDOMETRIUM	0.93	1	0.457	FALSE	499	1288	110	792	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND5--MT-ATP8	11	2	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	NO	5634	4	0	0.76	0.1795	0.0326	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE319_ENDOMETRIUM	0	0.76	0.2121	FALSE	43	37	8	105	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND6--MT-TE	3	33	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.049	0.5385	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE319_ENDOMETRIUM	0.95	1	0.5875	FALSE	499	1288	110	792	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND6--MT-TE	7	15	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1142	0.2448	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE319_ENDOMETRIUM	0.96	1	0.359	FALSE	499	1288	110	792	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	RP11-123O10.4--GRIP1	10	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1632	0.0163	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MFE319_ENDOMETRIUM	1	1	0.1795	FALSE	416	2512	207	587	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND6--MT-TE	5	19	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0816	0.3101	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE319_ENDOMETRIUM	0.92	1	0.3917	FALSE	499	1288	110	792	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND5--MT-ATP8	9	2	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1469	0.0326	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE319_ENDOMETRIUM	1	1	0.1795	FALSE	43	37	8	105	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	KIF26B--EFCAB2	8	5	KIF26B	2699	chr1:245319985:+	EFCAB2	40668	chr1:245222688:+	ONLY_REF_SPLICE	YES	13	14	0.5	0.48	0.1306	0.0816	LOCAL_REARRANGEMENT:+:[27821],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,EFCAB2->EF-hand_calcium_binding_domain_2,chr1:245133007-245290466:+	MFE319_ENDOMETRIUM	0.48	0.5	0.2122	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND6--MT-TE	3	21	MT-ND6	1209	chrM:14465:-	MT-TE	4542	chrM:14726:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.049	0.3427	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE319_ENDOMETRIUM	0.89	1	0.3917	FALSE	499	1288	110	792	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ATP6--MT-CO1	6	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	12485	29857	0	0	0.0979	0.0326	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MFE319_ENDOMETRIUM	0	0	0.1305	FALSE	183	104	9	328	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ATP6--MT-CO1	6	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	12709	27552	0	0	0.0979	0.0326	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MFE319_ENDOMETRIUM	0	0	0.1305	FALSE	183	104	9	328	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ATP6--MT-CO1	6	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	15267	30432	0	0	0.0979	0.0326	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MFE319_ENDOMETRIUM	0	0	0.1305	FALSE	183	104	9	328	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	ERBB4--AC079610.1	6	0	ERBB4	1393	chr2:213403173:-	AC079610.1	50458	chr2:213446132:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0979	0	LOCAL_REARRANGEMENT:-:[42516],ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,AC079610.1->chr2:213446081-213886269:-	MFE319_ENDOMETRIUM	1	1	0.0979	TRUE	0	2	0	3	2	TRUE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND6--MT-TE	6	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0979	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE319_ENDOMETRIUM	1	1	0.0979	FALSE	499	1288	110	792	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0979	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MFE319_ENDOMETRIUM	1	1	0.0979	FALSE	462	80	0	856	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	APP--MT-CO3	5	2	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	2281	13878	0	0	0.0816	0.0326	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MFE319_ENDOMETRIUM	0	0	0.1142	FALSE	0	0	0	26	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND5--MT-ATP8	5	2	MT-ND5	2687	chrM:14023:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	NO	944	4	0.01	0.64	0.0816	0.0326	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE319_ENDOMETRIUM	0.01	0.64	0.1142	FALSE	43	37	8	105	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND5--MT-ATP8	5	2	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6819	35	0	0.17	0.0816	0.0326	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE319_ENDOMETRIUM	0	0.17	0.1142	FALSE	43	37	8	105	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	APP--MT-ND2	5	0	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0816	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MFE319_ENDOMETRIUM	1	1	0.0816	FALSE	0	1	0	51	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0816	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MFE319_ENDOMETRIUM	1	1	0.0816	FALSE	292	1546	117	613	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ATP6--MT-CO1	4	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	12770	30602	0	0	0.0653	0.0326	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MFE319_ENDOMETRIUM	0	0	0.0979	FALSE	183	104	9	328	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	KIF26B--EFCAB2	4	1	KIF26B	1503	chr1:245318789:+	EFCAB2	40668	chr1:245222688:+	ONLY_REF_SPLICE	YES	20	14	0.2	0.26	0.0653	0.0163	LOCAL_REARRANGEMENT:+:[27821],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,EFCAB2->EF-hand_calcium_binding_domain_2,chr1:245133007-245290466:+	MFE319_ENDOMETRIUM	0.2	0.26	0.0816	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND5--MT-ATP8	4	1	MT-ND5	2220	chrM:13556:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	5662	662	0	0.01	0.0653	0.0163	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE319_ENDOMETRIUM	0	0.01	0.0816	FALSE	43	37	8	105	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0653	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE319_ENDOMETRIUM	1	1	0.0653	FALSE	499	1288	110	792	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	RP11-680G10.1--GSE1	3	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	13	1	0.35	0.049	0.0653	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MFE319_ENDOMETRIUM	0.35	1	0.1143	TRUE	458	1351	185	561	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND5--MT-ATP8	3	2	MT-ND5	2339	chrM:13675:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	4959	0	0	1	0.049	0.0326	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE319_ENDOMETRIUM	0	1	0.0816	FALSE	43	37	8	105	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0.0326	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MFE319_ENDOMETRIUM	1	1	0.0816	FALSE	462	80	0	856	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ATP6--MT-CO1	3	1	MT-ATP6	1221	chrM:8747:+	MT-CO1	5608	chrM:6830:+	INCL_NON_REF_SPLICE	YES	17892	30200	0	0	0.049	0.0163	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MFE319_ENDOMETRIUM	0	0	0.0653	FALSE	183	104	9	328	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	NRIP1--AF127936.7	3	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	21	0	0.16	1	0.049	0.0163	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MFE319_ENDOMETRIUM	0.16	1	0.0653	FALSE	125	705	46	456	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	UTRN--STX11	2	5	UTRN	1121	chr6:144606957:+	STX11	92330	chr6:144507760:+	ONLY_REF_SPLICE	YES	8	2	0.47	0.78	0.0326	0.0816	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[97330],UTRN->chr6:144606837-145174170:+,utrophin,STX11->chr6:144471663-144509507:+,syntaxin_11	MFE319_ENDOMETRIUM	0.47	0.78	0.1142	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND5--MT-ATP8	3	0	MT-ND5	1627	chrM:12963:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE319_ENDOMETRIUM	1	1	0.049	FALSE	42	36	7	104	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE319_ENDOMETRIUM	1	1	0.049	FALSE	499	1288	110	792	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE319_ENDOMETRIUM	1	1	0.049	FALSE	499	1288	110	792	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE319_ENDOMETRIUM	1	1	0.049	FALSE	499	1288	110	792	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	KIF26B--EFCAB2	2	3	KIF26B	2699	chr1:245319985:+	EFCAB2	42779	chr1:245245385:+	ONLY_REF_SPLICE	YES	13	14	0.28	0.26	0.0326	0.049	LOCAL_REARRANGEMENT:+:[27821],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,EFCAB2->EF-hand_calcium_binding_domain_2,chr1:245133007-245290466:+	MFE319_ENDOMETRIUM	0.26	0.28	0.0816	TRUE	0	1	0	1	1	TRUE	ACH-000988
MFE319_ENDOMETRIUM	CTNNB1--TRAK1	2	2	CTNNB1	3896	chr3:41241161:+	TRAK1	24305	chr3:42128596:+	ONLY_REF_SPLICE	YES	901	5	0	0.44	0.0326	0.0326	CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,TRAK1->chr3:42055294-42267381:+,trafficking_protein,_kinesin_binding_1	MFE319_ENDOMETRIUM	0	0.44	0.0652	FALSE	0	0	0	2	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	ALCAM--CBLB	2	0	ALCAM	1573	chr3:105086325:+	CBLB	29981	chr3:105586435:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:+:-:[78561],ALCAM->activated_leukocyte_cell_adhesion_molecule,chr3:105085753-105295744:+,CBLB->Cbl_proto-oncogene_B,Oncogene{Bushman},chr3:105374305-105588396:-	MFE319_ENDOMETRIUM	1	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	ATP6V0E1--ERGIC1	2	0	ATP6V0E1	2256	chr5:172421825:+	ERGIC1	15393	chr5:172336670:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[31072],ATP6V0E1->ATPase_H+_transporting_V0_subunit_e1,chr5:172410760-172462448:+,ERGIC1->chr5:172261278-172379688:+,endoplasmic_reticulum-golgi_intermediate_compartment_1	MFE319_ENDOMETRIUM	1	1	0.0326	TRUE	0	0	0	2	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	KIAA1671--SGSM1	2	0	KIAA1671	1043	chr22:25348739:+	SGSM1	58539	chr22:25313625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:+:[25152],KIAA1671->KIAA1671,chr22:25348697-25593415:+,SGSM1->chr22:25202236-25323545:+,small_G_protein_signaling_modulator_1	MFE319_ENDOMETRIUM	1	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	PRR14L--YWHAH	2	0	PRR14L	1148	chr22:32145979:-	YWHAH	28929	chr22:32352126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	PRR14L->chr22:32072242-32146126:-,proline_rich_14_like,YWHAH->chr22:32340447-32353590:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_eta	MFE319_ENDOMETRIUM	1	1	0.0326	TRUE	0	1	0	2	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	SHROOM3--CCNI	2	0	SHROOM3	6004	chr4:77507622:+	CCNI	34951	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	GTEx&tcga_normals:1/3694=0.03%,SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3,CCNI->chr4:77968311-77997158:-,cyclin_I	MFE319_ENDOMETRIUM	1	1	0.0326	TRUE	0	1	0	3	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	CD97--ADAMTS10	1	2	CD97	2045	chr19:14492357:+	ADAMTS10	35591	chr19:8645886:-	ONLY_REF_SPLICE	NO	34	0	0.08	1	0.0163	0.0326	CD97->Oncogene{Bushman},chr19:14491313-14519537:+,ADAMTS10->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_10,chr19:8645126-8675620:-	MFE319_ENDOMETRIUM	0.08	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	HIF1A--PRKCH	1	2	HIF1A	1327	chr14:62162557:+	PRKCH	53789	chr14:61995793:+	ONLY_REF_SPLICE	YES	363	73	0.01	0.04	0.0163	0.0326	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	MFE319_ENDOMETRIUM	0.01	0.04	0.0489	FALSE	0	3	0	1	1	FALSE	ACH-000988
MFE319_ENDOMETRIUM	RP11-353N4.6--SEC22B	1	2	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	88	259	0.03	0.01	0.0163	0.0326	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	MFE319_ENDOMETRIUM	0.01	0.03	0.0489	FALSE	49	42	7	43	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	19	1	0.14	0.0163	0.0326	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MFE319_ENDOMETRIUM	0.14	1	0.0489	TRUE	465	1949	224	605	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	USP30--RP11-181C3.1	1	2	USP30	8883	chr12:109494596:+	RP11-181C3.1	24904	chr12:98896390:-	ONLY_REF_SPLICE	YES	31	0	0.09	1	0.0163	0.0326	USP30->chr12:109460894-109525831:+,ubiquitin_specific_peptidase_30,RP11-181C3.1->chr12:98879322-98897633:-	MFE319_ENDOMETRIUM	0.09	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	USP30--RP11-181C3.1	1	2	USP30	8883	chr12:109494596:+	RP11-181C3.1	25934	chr12:98887262:-	ONLY_REF_SPLICE	YES	31	0	0.09	1	0.0163	0.0326	USP30->chr12:109460894-109525831:+,ubiquitin_specific_peptidase_30,RP11-181C3.1->chr12:98879322-98897633:-	MFE319_ENDOMETRIUM	0.09	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	BSG--TRIP13	1	1	BSG	7433	chr19:580461:+	TRIP13	19778	chr5:904263:+	ONLY_REF_SPLICE	YES	2040	135	0	0.01	0.0163	0.0163	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,TRIP13->chr5:892758-919472:+,thyroid_hormone_receptor_interactor_13	MFE319_ENDOMETRIUM	0	0.01	0.0326	FALSE	0	0	0	1	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	DDX17--FAM227A	1	1	DDX17	6812	chr22:38894090:-	FAM227A	39128	chr22:38995926:-	ONLY_REF_SPLICE	YES	217	3	0.01	0.4	0.0163	0.0163	LOCAL_REARRANGEMENT:-:[70460],DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-,FAM227A->chr22:38974125-39052634:-,family_with_sequence_similarity_227_member_A	MFE319_ENDOMETRIUM	0.01	0.4	0.0326	FALSE	0	0	0	1	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	DICER1--RB1	1	1	DICER1	1781	chr14:95623567:-	RB1	58864	chr13:49027129:+	ONLY_REF_SPLICE	NO	1	110	0.67	0.02	0.0163	0.0163	DICER1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:95552565-95624347:-,dicer_1,_ribonuclease_III,RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1	MFE319_ENDOMETRIUM	0.02	0.67	0.0326	TRUE	0	0	0	1	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	FUBP1--IVNS1ABP	1	1	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	132	504	0.01	0	0.0163	0.0163	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	MFE319_ENDOMETRIUM	0	0.01	0.0326	FALSE	1	4	0	16	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	KIAA1671--SGSM1	1	1	KIAA1671	1043	chr22:25348739:+	SGSM1	57429	chr22:25308610:+	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0163	0.0163	LOCAL_REARRANGEMENT:+:[25152],KIAA1671->KIAA1671,chr22:25348697-25593415:+,SGSM1->chr22:25202236-25323545:+,small_G_protein_signaling_modulator_1	MFE319_ENDOMETRIUM	0.5	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	MINOS1--CAPZB	1	1	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	91	47	0.02	0.04	0.0163	0.0163	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	MFE319_ENDOMETRIUM	0.02	0.04	0.0326	TRUE	2	7	0	21	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	PSMD8--CATSPERG	1	1	PSMD8	2919	chr19:38867094:+	CATSPERG	22650	chr19:38848918:+	ONLY_REF_SPLICE	YES	778	2	0	0.5	0.0163	0.0163	LOCAL_REARRANGEMENT:+:[3587],PSMD8->chr19:38865176-38874464:+,proteasome_26S_subunit,_non-ATPase_8,CATSPERG->cation_channel_sperm_associated_auxiliary_subunit_gamma,chr19:38826415-38861589:+	MFE319_ENDOMETRIUM	0	0.5	0.0326	FALSE	0	0	0	1	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	RNF139--UBE3C	1	1	RNF139	1553	chr8:125487531:+	UBE3C	30662	chr7:157023774:+	ONLY_REF_SPLICE	NO	49	152	0.04	0.01	0.0163	0.0163	RNF139->Oncogene{Bushman},chr8:125486979-125500155:+,ring_finger_protein_139,UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C	MFE319_ENDOMETRIUM	0.01	0.04	0.0326	FALSE	0	0	0	1	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	RP11-353N4.6--SEC22B	1	1	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	86	259	0.02	0.01	0.0163	0.0163	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	MFE319_ENDOMETRIUM	0.01	0.02	0.0326	FALSE	49	42	7	43	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	SMARCC1--CANX	1	1	SMARCC1	27752	chr3:47676680:-	CANX	44859	chr5:179132680:+	ONLY_REF_SPLICE	YES	204	823	0.01	0	0.0163	0.0163	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,CANX->calnexin,chr5:179105629-179157926:+	MFE319_ENDOMETRIUM	0	0.01	0.0326	FALSE	0	0	0	1	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	USP30--RP11-181C3.1	1	1	USP30	5742	chr12:109490566:+	RP11-181C3.1	25934	chr12:98887262:-	ONLY_REF_SPLICE	YES	39	0	0.05	1	0.0163	0.0163	USP30->chr12:109460894-109525831:+,ubiquitin_specific_peptidase_30,RP11-181C3.1->chr12:98879322-98897633:-	MFE319_ENDOMETRIUM	0.05	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000988
MFE319_ENDOMETRIUM	VCL--ADK	1	1	VCL	7236	chr10:75834661:+	ADK	33419	chr10:75960522:+	ONLY_REF_SPLICE	NO	314	129	0.01	0.02	0.0163	0.0163	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[31042],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ADK->adenosine_kinase,chr10:75910960-76469061:+	MFE319_ENDOMETRIUM	0.01	0.02	0.0326	FALSE	0	0	0	1	0	FALSE	ACH-000988
MFE319_ENDOMETRIUM	VCL--ADK	1	1	VCL	6075	chr10:75832610:+	ADK	43773	chr10:76429941:+	ONLY_REF_SPLICE	YES	404	135	0	0.01	0.0163	0.0163	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[31042],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ADK->adenosine_kinase,chr10:75910960-76469061:+	MFE319_ENDOMETRIUM	0	0.01	0.0326	FALSE	0	0	0	1	0	FALSE	ACH-000988
PANC0203_PANCREAS	THRAP3--AGO3	199	49	THRAP3	3151	chr1:36725085:+	AGO3	40472	chr1:36520547:+	ONLY_REF_SPLICE	YES	102	18	0.71	0.93	1.6992	0.4184	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+	PANC0203_PANCREAS	0.71	0.93	2.1176	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	MT-TA--MT-TN	178	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5199	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0203_PANCREAS	1	1	1.5199	FALSE	369	2501	205	193	0	FALSE	ACH-000042
PANC0203_PANCREAS	TIMM23B--LINC00843	85	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.7258	0.1025	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PANC0203_PANCREAS	0.98	1	0.8283	TRUE	508	994	45	981	0	FALSE	ACH-000042
PANC0203_PANCREAS	RP3-449O17.1--KIAA1671	73	29	RP3-449O17.1	5950	chr22:38776375:-	KIAA1671	34761	chr22:25566787:+	ONLY_REF_SPLICE	YES	16	29	0.86	0.78	0.6233	0.2476	RP3-449O17.1->chr22:38731767-38794934:-,KIAA1671->KIAA1671,chr22:25348697-25593415:+	PANC0203_PANCREAS	0.78	0.86	0.8709	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	MT-ND6--MT-TE	68	10	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.5806	0.0854	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0203_PANCREAS	0.97	1	0.666	FALSE	499	1288	110	792	0	FALSE	ACH-000042
PANC0203_PANCREAS	MAPK1--LL22NC03-63E9.3	63	27	MAPK1	15441	chr22:22112989:-	LL22NC03-63E9.3	23707	chr22:22905268:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.5379	0.2305	MAPK1->Oncogene{Bushman},chr22:22108789-22221970:-,mitogen-activated_protein_kinase_1,LL22NC03-63E9.3->chr22:22901750-22909007:+	PANC0203_PANCREAS	0.97	1	0.7684	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	MT-TA--MT-TC	62	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5294	0.0512	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0203_PANCREAS	1	1	0.5806	FALSE	462	80	0	856	0	FALSE	ACH-000042
PANC0203_PANCREAS	TIMM23--RP11-464F9.1	51	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	116	2	0.31	0.96	0.4355	0.0085	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PANC0203_PANCREAS	0.31	0.96	0.444	TRUE	519	3926	326	965	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-ATP8	44	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3757	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0203_PANCREAS	1	1	0.3757	FALSE	351	233	23	137	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND6--MT-TE	36	29	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.93	1	0.3074	0.2476	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0203_PANCREAS	0.93	1	0.555	FALSE	499	1288	110	792	0	FALSE	ACH-000042
PANC0203_PANCREAS	CABIN1--CSNK1E	39	13	CABIN1	1537	chr22:24408178:+	CSNK1E	59738	chr22:38699253:-	ONLY_REF_SPLICE	YES	26	37	0.67	0.58	0.333	0.111	CABIN1->calcineurin_binding_protein_1,chr22:24407642-24574596:+,CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-	PANC0203_PANCREAS	0.58	0.67	0.444	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	MT-ND6--MT-TE	36	10	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.3074	0.0854	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0203_PANCREAS	0.96	1	0.3928	FALSE	499	1288	110	792	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TA--MT-TN	11	98	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0939	0.8368	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0203_PANCREAS	1	1	0.9307	FALSE	369	2501	205	193	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TA--MT-TN	24	28	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2049	0.2391	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0203_PANCREAS	1	1	0.444	FALSE	369	2501	205	193	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TA--MT-TN	17	52	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1452	0.444	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0203_PANCREAS	1	1	0.5892	FALSE	369	2501	205	193	0	FALSE	ACH-000042
PANC0203_PANCREAS	OR51S1--TP53I11	30	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2562	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	PANC0203_PANCREAS	1	1	0.2562	TRUE	402	216	10	229	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TA--MT-TN	20	35	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1708	0.2989	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0203_PANCREAS	1	1	0.4697	FALSE	369	2501	205	193	0	FALSE	ACH-000042
PANC0203_PANCREAS	ZNF654--HMGB2	28	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2391	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	PANC0203_PANCREAS	1	1	0.2391	TRUE	0	0	0	518	0	FALSE	ACH-000042
PANC0203_PANCREAS	AKAP13--GOLGA6L3	27	3	AKAP13	20334	chr15:86129054:+	GOLGA6L3	65979	chr15:85785451:+	ONLY_REF_SPLICE	YES	21	0	0.59	1	0.2305	0.0256	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,GOLGA6L3->chr15:85783703-85790410:+,golgin_A6_family-like_3	PANC0203_PANCREAS	0.59	1	0.2561	TRUE	1	0	1	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	MT-TL1--MT-RNR2	7	80	MT-TL1	1095	chrM:3324:+	MT-RNR2	5554	chrM:3149:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0.6831	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0203_PANCREAS	1	1	0.7429	FALSE	7	521	16	32	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TA--MT-TN	8	70	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0683	0.5977	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0203_PANCREAS	1	1	0.666	FALSE	369	2501	205	193	0	FALSE	ACH-000042
PANC0203_PANCREAS	ADRBK2--AC011718.2	25	1	ADRBK2	8839	chr22:26070495:+	AC011718.2	36587	chr22:20654340:-	ONLY_REF_SPLICE	YES	69	0	0.27	1	0.2135	0.0085	ADRBK2->adrenergic,_beta,_receptor_kinase_2,chr22:25960816-26125261:+,AC011718.2->chr22:20632023-20661407:-	PANC0203_PANCREAS	0.27	1	0.222	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	MTND4P12--MTATP6P1	24	4	MTND4P12	1773	chr5:134262954:-	MTATP6P1	5319	chr1:569017:+	INCL_NON_REF_SPLICE	YES	10	0	0.74	1	0.2049	0.0342	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	PANC0203_PANCREAS	0.74	1	0.2391	TRUE	27	31	5	8	0	FALSE	ACH-000042
PANC0203_PANCREAS	CABIN1--CSNK1E	24	1	CABIN1	1176	chr22:24407817:+	CSNK1E	59738	chr22:38699253:-	ONLY_REF_SPLICE	YES	0	37	1	0.4	0.2049	0.0085	CABIN1->calcineurin_binding_protein_1,chr22:24407642-24574596:+,CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-	PANC0203_PANCREAS	0.4	1	0.2134	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	MT-ND6--MT-TE	6	73	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0512	0.6233	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0203_PANCREAS	1	1	0.6745	FALSE	499	1288	110	792	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TA--MT-TN	23	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1964	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0203_PANCREAS	1	1	0.1964	FALSE	369	2501	205	193	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TL1--MT-RNR2	6	65	MT-TL1	1086	chrM:3315:+	MT-RNR2	5568	chrM:3163:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.0512	0.555	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0203_PANCREAS	0.99	1	0.6062	FALSE	7	521	16	32	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND6--MT-TE	3	73	MT-ND6	1260	chrM:14414:-	MT-TE	4516	chrM:14752:-	INCL_NON_REF_SPLICE	YES	6	0	0.93	1	0.0256	0.6233	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0203_PANCREAS	0.93	1	0.6489	FALSE	499	1288	110	792	0	FALSE	ACH-000042
PANC0203_PANCREAS	THRAP3--TEKT2	20	5	THRAP3	3151	chr1:36725085:+	TEKT2	20888	chr1:36550471:+	ONLY_REF_SPLICE	YES	102	0	0.2	1	0.1708	0.0427	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,TEKT2->chr1:36549676-36553876:+,tektin_2	PANC0203_PANCREAS	0.2	1	0.2135	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	RP11-561C5.4--RP11-815J21.2	19	5	RP11-561C5.4	1317	chr15:85777710:-	RP11-815J21.2	11002	chr15:86123073:-	INCL_NON_REF_SPLICE	YES	17	5	0.59	0.83	0.1622	0.0427	RP11-561C5.4->chr15:85747141-85778026:-,RP11-815J21.2->chr15:86122277-86123409:-	PANC0203_PANCREAS	0.59	0.83	0.2049	TRUE	0	1	1	1	1	TRUE	ACH-000042
PANC0203_PANCREAS	MT-TA--MT-TN	20	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1708	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0203_PANCREAS	1	1	0.1708	FALSE	369	2501	205	193	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TA--MT-TC	18	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1537	0.0512	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0203_PANCREAS	1	1	0.2049	FALSE	462	80	0	856	0	FALSE	ACH-000042
PANC0203_PANCREAS	THRAP3--AGO3	17	10	THRAP3	3151	chr1:36725085:+	AGO3	41163	chr1:36521238:+	ONLY_REF_SPLICE	YES	102	20	0.21	0.57	0.1452	0.0854	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+	PANC0203_PANCREAS	0.21	0.57	0.2306	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-ATP8	19	0	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1622	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0203_PANCREAS	1	1	0.1622	FALSE	351	233	23	137	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND6--MT-TE	7	45	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.91	1	0.0598	0.3842	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0203_PANCREAS	0.91	1	0.444	FALSE	499	1288	110	792	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TA--MT-TN	5	48	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0.4099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0203_PANCREAS	1	1	0.4526	FALSE	369	2501	205	193	0	FALSE	ACH-000042
PANC0203_PANCREAS	NPM1P24--SET	17	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1452	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PANC0203_PANCREAS	1	1	0.1452	TRUE	0	0	0	434	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TA--MT-TN	4	51	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.4355	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0203_PANCREAS	1	1	0.4697	FALSE	369	2501	205	193	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-TG	14	0	MT-ND3	1026	chrM:10084:+	MT-TG	4396	chrM:10040:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1195	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	PANC0203_PANCREAS	1	1	0.1195	FALSE	97	9	0	14	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND6--MT-TE	5	33	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0427	0.2818	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0203_PANCREAS	0.95	1	0.3245	FALSE	499	1288	110	792	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND6--MT-TE	5	32	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.0427	0.2732	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0203_PANCREAS	0.88	1	0.3159	FALSE	499	1288	110	792	0	FALSE	ACH-000042
PANC0203_PANCREAS	MAPK1--LL22NC03-63E9.3	7	23	MAPK1	15423	chr22:22113007:-	LL22NC03-63E9.3	23707	chr22:22905268:+	INCL_NON_REF_SPLICE	YES	5	0	0.86	1	0.0598	0.1964	MAPK1->Oncogene{Bushman},chr22:22108789-22221970:-,mitogen-activated_protein_kinase_1,LL22NC03-63E9.3->chr22:22901750-22909007:+	PANC0203_PANCREAS	0.86	1	0.2562	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	RP3-449O17.1--KIAA1671	5	29	RP3-449O17.1	7229	chr22:38765991:-	KIAA1671	34761	chr22:25566787:+	ONLY_REF_SPLICE	YES	14	29	0.71	0.54	0.0427	0.2476	RP3-449O17.1->chr22:38731767-38794934:-,KIAA1671->KIAA1671,chr22:25348697-25593415:+	PANC0203_PANCREAS	0.54	0.71	0.2903	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	MT-ND6--MT-TE	4	32	MT-ND6	1199	chrM:14475:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.0342	0.2732	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0203_PANCREAS	0.88	1	0.3074	FALSE	499	1288	110	792	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TL1--MT-RNR2	11	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0939	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0203_PANCREAS	1	1	0.0939	FALSE	7	521	16	32	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TL1--MT-RNR2	9	6	MT-TL1	1104	chrM:3333:+	MT-RNR2	5603	chrM:3198:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.94	0.0768	0.0512	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0203_PANCREAS	0.94	1	0.128	FALSE	7	521	16	32	0	FALSE	ACH-000042
PANC0203_PANCREAS	RP11-96H19.1--RP11-446N19.1	8	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0683	0.0768	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PANC0203_PANCREAS	0.94	1	0.1451	FALSE	515	4851	409	746	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND6--MT-TE	10	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0854	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0203_PANCREAS	1	1	0.0854	FALSE	499	1288	110	792	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND6--MT-TE	3	28	MT-ND6	1144	chrM:14530:-	MT-TE	4573	chrM:14695:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0256	0.2391	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0203_PANCREAS	0.91	1	0.2647	FALSE	499	1288	110	792	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TA--MT-TN	10	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0854	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0203_PANCREAS	1	1	0.0854	FALSE	369	2501	205	193	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0768	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0203_PANCREAS	1	1	0.0768	FALSE	462	80	0	856	0	FALSE	ACH-000042
PANC0203_PANCREAS	NRIP1--AF127936.7	9	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0768	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0203_PANCREAS	1	1	0.0768	FALSE	292	1546	117	613	0	FALSE	ACH-000042
PANC0203_PANCREAS	RP11-114H23.1--RP11-114H23.2	7	6	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	1	0.93	0.93	0.0598	0.0512	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	PANC0203_PANCREAS	0.93	0.93	0.111	FALSE	81	155	12	160	0	FALSE	ACH-000042
PANC0203_PANCREAS	MTND4P12--MTATP6P1	5	12	MTND4P12	2122	chr5:134262605:-	MTATP6P1	5627	chr1:569325:+	INCL_NON_REF_SPLICE	NO	5	2545	0.77	0.01	0.0427	0.1025	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	PANC0203_PANCREAS	0.01	0.77	0.1452	FALSE	27	31	5	8	0	FALSE	ACH-000042
PANC0203_PANCREAS	RP3-449O17.1--KIAA1671	7	4	RP3-449O17.1	1150	chr22:38794785:-	KIAA1671	34761	chr22:25566787:+	ONLY_REF_SPLICE	YES	4	29	0.73	0.28	0.0598	0.0342	RP3-449O17.1->chr22:38731767-38794934:-,KIAA1671->KIAA1671,chr22:25348697-25593415:+	PANC0203_PANCREAS	0.28	0.73	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-TG	6	6	MT-ND3	1074	chrM:10132:+	MT-TG	4395	chrM:10039:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0512	0.0512	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	PANC0203_PANCREAS	1	1	0.1024	FALSE	97	9	0	14	0	FALSE	ACH-000042
PANC0203_PANCREAS	MTND4P12--MTATP6P1	6	5	MTND4P12	1783	chr5:134262944:-	MTATP6P1	5323	chr1:569021:+	INCL_NON_REF_SPLICE	NO	9	0	0.55	1	0.0512	0.0427	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	PANC0203_PANCREAS	0.55	1	0.0939	TRUE	27	31	5	8	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-ATP8	7	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0203_PANCREAS	1	1	0.0598	FALSE	351	233	23	137	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND6--MT-TE	7	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0203_PANCREAS	1	1	0.0598	FALSE	499	1288	110	792	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND6--MT-TE	7	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0203_PANCREAS	1	1	0.0598	FALSE	499	1288	110	792	0	FALSE	ACH-000042
PANC0203_PANCREAS	NIPA2--POLA1	7	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	PANC0203_PANCREAS	1	1	0.0598	TRUE	46	1352	75	139	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-ATP8	6	0	MT-ND3	1060	chrM:10118:+	MT-ATP8	4489	chrM:8508:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0512	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0203_PANCREAS	1	1	0.0512	FALSE	351	233	23	137	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TA--MT-TN	6	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0512	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0203_PANCREAS	1	1	0.0512	FALSE	369	2501	205	193	0	FALSE	ACH-000042
PANC0203_PANCREAS	MTND4P12--MTATP6P1	3	12	MTND4P12	2221	chr5:134262506:-	MTATP6P1	5643	chr1:569341:+	INCL_NON_REF_SPLICE	YES	1	2505	0.94	0.01	0.0256	0.1025	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	PANC0203_PANCREAS	0.01	0.94	0.1281	TRUE	27	22	4	8	0	FALSE	ACH-000042
PANC0203_PANCREAS	C15orf57--CBX3	5	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	32	20	0.2	0.29	0.0427	0.0256	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PANC0203_PANCREAS	0.2	0.29	0.0683	TRUE	267	562	48	632	0	FALSE	ACH-000042
PANC0203_PANCREAS	MTND4P12--MTATP6P1	3	11	MTND4P12	1899	chr5:134262828:-	MTATP6P1	5446	chr1:569144:+	INCL_NON_REF_SPLICE	YES	14	0	0.5	1	0.0256	0.0939	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	PANC0203_PANCREAS	0.5	1	0.1195	TRUE	27	31	5	8	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-ATP8	5	2	MT-ND3	1236	chrM:10294:+	MT-ATP8	4437	chrM:8456:+	INCL_NON_REF_SPLICE	YES	837	0	0.01	1	0.0427	0.0171	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0203_PANCREAS	0.01	1	0.0598	FALSE	351	233	23	137	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-TG	3	10	MT-ND3	1068	chrM:10126:+	MT-TG	4385	chrM:10029:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0.0854	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	PANC0203_PANCREAS	1	1	0.111	FALSE	97	9	0	14	0	FALSE	ACH-000042
PANC0203_PANCREAS	RP11-96H19.1--RP11-446N19.1	3	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0256	0.0854	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PANC0203_PANCREAS	0.93	1	0.111	FALSE	407	2205	196	549	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-ATP8	5	0	MT-ND3	1053	chrM:10111:+	MT-ATP8	4482	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0203_PANCREAS	1	1	0.0427	FALSE	351	233	23	137	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4444	chrM:8463:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0203_PANCREAS	1	1	0.0427	FALSE	351	233	23	137	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TA--MT-TN	5	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0203_PANCREAS	1	1	0.0427	FALSE	369	2501	205	193	0	FALSE	ACH-000042
PANC0203_PANCREAS	MTND4P12--MTATP6P1	5	0	MTND4P12	1216	chr5:134263511:-	MTATP6P1	5637	chr1:569335:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	PANC0203_PANCREAS	1	1	0.0427	TRUE	27	31	5	8	0	FALSE	ACH-000042
PANC0203_PANCREAS	MTND4P12--MTATP6P1	4	3	MTND4P12	2218	chr5:134262509:-	MTATP6P1	5935	chr1:569633:+	INCL_NON_REF_SPLICE	YES	1	1712	0.88	0	0.0342	0.0256	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	PANC0203_PANCREAS	0	0.88	0.0598	FALSE	27	22	4	8	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-ATP8	4	2	MT-ND3	1290	chrM:10348:+	MT-ATP8	4418	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0342	0.0171	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0203_PANCREAS	0.75	1	0.0513	FALSE	351	233	23	137	0	FALSE	ACH-000042
PANC0203_PANCREAS	C15orf57--CBX3	3	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	34	20	0.19	0.29	0.0256	0.0427	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PANC0203_PANCREAS	0.19	0.29	0.0683	TRUE	267	562	48	632	0	FALSE	ACH-000042
PANC0203_PANCREAS	MAPK1--LL22NC03-63E9.3	3	5	MAPK1	8745	chr22:22123484:-	LL22NC03-63E9.3	23707	chr22:22905268:+	ONLY_REF_SPLICE	YES	170	0	0.04	1	0.0256	0.0427	MAPK1->Oncogene{Bushman},chr22:22108789-22221970:-,mitogen-activated_protein_kinase_1,LL22NC03-63E9.3->chr22:22901750-22909007:+	PANC0203_PANCREAS	0.04	1	0.0683	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-ATP8	4	1	MT-ND3	1230	chrM:10288:+	MT-ATP8	4465	chrM:8484:+	INCL_NON_REF_SPLICE	YES	1134	916	0	0.01	0.0342	0.0085	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0203_PANCREAS	0	0.01	0.0427	FALSE	351	233	23	137	0	FALSE	ACH-000042
PANC0203_PANCREAS	MTND4P12--MTATP6P1	4	1	MTND4P12	1756	chr5:134262971:-	MTATP6P1	5665	chr1:569363:+	INCL_NON_REF_SPLICE	YES	6	1792	0.45	0	0.0342	0.0085	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	PANC0203_PANCREAS	0	0.45	0.0427	FALSE	27	31	5	8	0	FALSE	ACH-000042
PANC0203_PANCREAS	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	9	1	0.36	0.0342	0.0085	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PANC0203_PANCREAS	0.36	1	0.0427	FALSE	16	356	14	466	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-ATP8	3	2	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	75	5	0.06	0.5	0.0256	0.0171	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0203_PANCREAS	0.06	0.5	0.0427	FALSE	351	233	23	137	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-ATP8	3	2	MT-ND3	1270	chrM:10328:+	MT-ATP8	4454	chrM:8473:+	INCL_NON_REF_SPLICE	NO	3	153	0.62	0.03	0.0256	0.0171	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0203_PANCREAS	0.03	0.62	0.0427	FALSE	351	233	23	137	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-ATP8	3	2	MT-ND3	1283	chrM:10341:+	MT-ATP8	4411	chrM:8430:+	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.0256	0.0171	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0203_PANCREAS	0.71	1	0.0427	FALSE	351	233	23	137	0	FALSE	ACH-000042
PANC0203_PANCREAS	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	31	1	0.14	0.0256	0.0171	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PANC0203_PANCREAS	0.14	1	0.0427	TRUE	465	1949	224	605	0	FALSE	ACH-000042
PANC0203_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0085	0.0854	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PANC0203_PANCREAS	0.92	1	0.0939	FALSE	275	511	55	178	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-ATP8	3	1	MT-ND3	1213	chrM:10271:+	MT-ATP8	4379	chrM:8398:+	INCL_NON_REF_SPLICE	YES	2021	0	0	1	0.0256	0.0085	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0203_PANCREAS	0	1	0.0341	FALSE	351	233	23	137	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-ATP8	3	0	MT-ND3	1100	chrM:10158:+	MT-ATP8	4445	chrM:8464:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0203_PANCREAS	1	1	0.0256	FALSE	351	233	23	137	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND3--MT-ATP8	3	0	MT-ND3	1071	chrM:10129:+	MT-ATP8	4502	chrM:8521:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0203_PANCREAS	1	1	0.0256	FALSE	351	233	23	137	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0203_PANCREAS	1	1	0.0256	FALSE	499	1288	110	792	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0203_PANCREAS	1	1	0.0256	FALSE	369	2501	205	193	0	FALSE	ACH-000042
PANC0203_PANCREAS	MT-TL1--MT-RNR2	3	0	MT-TL1	1020	chrM:3249:+	MT-RNR2	5583	chrM:3178:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0203_PANCREAS	1	1	0.0256	FALSE	7	521	16	32	0	FALSE	ACH-000042
PANC0203_PANCREAS	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PANC0203_PANCREAS	1	1	0.0256	TRUE	0	0	0	434	0	FALSE	ACH-000042
PANC0203_PANCREAS	NRIP1--AF127936.7	3	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0203_PANCREAS	1	1	0.0256	FALSE	164	806	69	479	0	FALSE	ACH-000042
PANC0203_PANCREAS	NRIP1--AF127936.7	3	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0203_PANCREAS	1	1	0.0256	FALSE	125	705	46	456	0	FALSE	ACH-000042
PANC0203_PANCREAS	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	PANC0203_PANCREAS	1	1	0.0256	TRUE	22	156	2	142	0	FALSE	ACH-000042
PANC0203_PANCREAS	THRAP3--AGO3	3	0	THRAP3	3151	chr1:36725085:+	AGO3	56149	chr1:36536224:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+	PANC0203_PANCREAS	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	RP11-114H23.1--RP11-114H23.2	2	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	1	3	0.8	0.57	0.0171	0.0171	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	PANC0203_PANCREAS	0.57	0.8	0.0342	FALSE	81	155	12	160	0	FALSE	ACH-000042
PANC0203_PANCREAS	RP11-680G10.1--GSE1	2	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	21	1	0.16	0.0171	0.0171	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PANC0203_PANCREAS	0.16	1	0.0342	TRUE	458	1351	185	561	0	FALSE	ACH-000042
PANC0203_PANCREAS	ADRBK2--AC011718.2	2	1	ADRBK2	7747	chr22:26068314:+	AC011718.2	36587	chr22:20654340:-	ONLY_REF_SPLICE	YES	97	0	0.03	1	0.0171	0.0085	ADRBK2->adrenergic,_beta,_receptor_kinase_2,chr22:25960816-26125261:+,AC011718.2->chr22:20632023-20661407:-	PANC0203_PANCREAS	0.03	1	0.0256	TRUE	0	0	0	1	0	FALSE	ACH-000042
PANC0203_PANCREAS	VRK2--CHMP1A	2	1	VRK2	16257	chr2:58316858:+	CHMP1A	32295	chr16:89713739:-	ONLY_REF_SPLICE	YES	18	211	0.14	0.01	0.0171	0.0085	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1},VRK2->chr2:58134786-58387055:+,vaccinia_related_kinase_2,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	PANC0203_PANCREAS	0.01	0.14	0.0256	FALSE	0	1	0	2	1	FALSE	ACH-000042
PANC0203_PANCREAS	ABCC3--CHMP6	2	0	ABCC3	22144	chr17:48755580:+	CHMP6	34803	chr17:78968381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+,CHMP6->charged_multivesicular_body_protein_6,chr17:78965398-78983317:+	PANC0203_PANCREAS	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	ADAP1--GET4	2	0	ADAP1	9672	chr7:959605:-	GET4	25015	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=5;pct=0.06%;dist=Small_Intestine_-_Terminal_Ileum=1,Nerve_-_Tibial=1,Whole_Blood=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[1467],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	PANC0203_PANCREAS	1	1	0.0171	TRUE	1	1	0	4	0	TRUE	ACH-000042
PANC0203_PANCREAS	GFOD2--RANBP10	2	0	GFOD2	1259	chr16:67753066:-	RANBP10	21140	chr16:67778358:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	LOCAL_REARRANGEMENT:-:[3681],GFOD2->chr16:67708434-67753324:-,glucose-fructose_oxidoreductase_domain_containing_2,RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-	PANC0203_PANCREAS	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	PPP3CA--HSPA9	2	0	PPP3CA	16896	chr4:101961639:-	HSPA9	34623	chr5:137895780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	PPP3CA->chr4:101944566-102269435:-,protein_phosphatase_3_catalytic_subunit_alpha,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	PANC0203_PANCREAS	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	TYMS--SET	2	0	TYMS	4286	chr18:662320:+	SET	17850	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	TYMS->chr18:657604-673578:+,thymidylate_synthetase,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PANC0203_PANCREAS	1	1	0.0171	TRUE	0	0	0	3	0	TRUE	ACH-000042
PANC0203_PANCREAS	ZNF74--ADRBK2	2	0	ZNF74	1548	chr22:20748952:+	ADRBK2	13551	chr22:26000344:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	ZNF74->chr22:20748405-20762745:+,zinc_finger_protein_74,ADRBK2->adrenergic,_beta,_receptor_kinase_2,chr22:25960816-26125261:+	PANC0203_PANCREAS	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000042
PANC0203_PANCREAS	RP11-120D5.1--MID1	1	3	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	0	9	1	0.31	0.0085	0.0256	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PANC0203_PANCREAS	0.31	1	0.0341	FALSE	2	31	0	60	0	FALSE	ACH-000042
PANC0203_PANCREAS	CAPZA2--SRP9	1	1	CAPZA2	3371	chr7:116502704:+	SRP9	25493	chr1:225965637:+	ONLY_REF_SPLICE	YES	46	23	0.04	0.08	0.0085	0.0085	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	PANC0203_PANCREAS	0.04	0.08	0.017	TRUE	0	0	0	9	0	FALSE	ACH-000042
PANC0203_PANCREAS	DBF4B--SND1	1	1	DBF4B	1759	chr17:42786734:+	SND1	56397	chr7:127731889:+	ONLY_REF_SPLICE	YES	63	105	0.03	0.02	0.0085	0.0085	DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+,SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1	PANC0203_PANCREAS	0.02	0.03	0.017	TRUE	0	0	0	1	0	FALSE	ACH-000042
PANC0203_PANCREAS	HNRNPH1--MGAT4B	1	1	HNRNPH1	4526	chr5:179050038:-	MGAT4B	21205	chr5:179228969:-	ONLY_REF_SPLICE	YES	558	183	0	0.01	0.0085	0.0085	HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),MGAT4B->chr5:179224597-179233952:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_B	PANC0203_PANCREAS	0	0.01	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000042
SKCO1_LARGE_INTESTINE	TIMM23B--LINC00843	100	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2377	0.3837	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKCO1_LARGE_INTESTINE	1	1	1.6214	TRUE	508	994	45	981	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	KANSL1--ARL17B	68	36	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	40	40	0.72	0.72	0.8416	0.4456	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SKCO1_LARGE_INTESTINE	0.72	0.72	1.2872	TRUE	181	1564	124	196	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	TIMM23--RP11-464F9.1	58	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	112	5	0.36	0.93	0.7178	0.0495	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKCO1_LARGE_INTESTINE	0.36	0.93	0.7673	TRUE	519	3926	326	965	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	LRBA--SH3D19	53	22	LRBA	12939	chr4:151826990:-	SH3D19	99683	chr4:152043359:-	ONLY_REF_SPLICE	YES	33	92	0.69	0.45	0.656	0.2723	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},YOSHIHARA_TCGA_num_samples[BLCA:1|HNSC:1|LUSC:1],{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[87024],LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,SH3D19->SH3_domain_containing_19,chr4:152023903-152246784:-	SKCO1_LARGE_INTESTINE	0.45	0.69	0.9283	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND6--MT-TE	53	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.656	0.0371	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKCO1_LARGE_INTESTINE	0.98	1	0.6931	FALSE	499	1288	110	792	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	GPR39--C2orf27A	47	9	GPR39	1378	chr2:133174524:+	C2orf27A	14050	chr2:132508206:+	INCL_NON_REF_SPLICE	YES	40	0	0.58	1	0.5817	0.1114	GPR39->G_protein-coupled_receptor_39,chr2:133174147-133404132:+,C2orf27A->chr2:132479948-132524973:+,chromosome_2_open_reading_frame_27A	SKCO1_LARGE_INTESTINE	0.58	1	0.6931	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	OR51S1--TP53I11	47	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5817	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SKCO1_LARGE_INTESTINE	1	1	0.5817	TRUE	402	216	10	229	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	140	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	33	0	0.81	1	0.0371	1.7327	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKCO1_LARGE_INTESTINE	0.81	1	1.7698	FALSE	344	826	44	306	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ND4L	13	99	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	7871	1	0.01	0.99	0.1609	1.2253	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKCO1_LARGE_INTESTINE	0.01	0.99	1.3862	FALSE	344	827	44	306	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	138	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	19	1	0.88	0.99	0.0371	1.708	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKCO1_LARGE_INTESTINE	0.88	0.99	1.7451	FALSE	344	826	44	306	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	FOXP1--LINC00877	31	7	FOXP1	15873	chr3:71348971:-	LINC00877	51642	chr3:72149161:-	ONLY_REF_SPLICE	YES	15	0	0.72	1	0.3837	0.0866	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,LINC00877->chr3:72084451-72291716:-,long_intergenic_non-protein_coding_RNA_877	SKCO1_LARGE_INTESTINE	0.72	1	0.4703	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-TA--MT-TC	31	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3837	0.0248	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKCO1_LARGE_INTESTINE	1	1	0.4085	FALSE	462	80	0	856	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND6--MT-TE	28	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.3465	0.0371	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKCO1_LARGE_INTESTINE	0.97	1	0.3836	FALSE	499	1288	110	792	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	94	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	9	1	0.92	0.99	0.0619	1.1634	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKCO1_LARGE_INTESTINE	0.92	0.99	1.2253	FALSE	344	821	44	306	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	97	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	149	1	0.4	0.99	0.0371	1.2005	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKCO1_LARGE_INTESTINE	0.4	0.99	1.2376	FALSE	344	827	44	306	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO2	24	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	66	5	0.31	0.85	0.297	0.0619	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKCO1_LARGE_INTESTINE	0.31	0.85	0.3589	FALSE	59	21	0	114	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND6--MT-TE	17	18	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2104	0.2228	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKCO1_LARGE_INTESTINE	0.97	1	0.4332	FALSE	499	1288	110	792	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ND4L	13	31	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9948	1	0	0.98	0.1609	0.3837	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKCO1_LARGE_INTESTINE	0	0.98	0.5446	FALSE	344	827	44	306	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ND4L	11	38	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	12736	1	0	0.98	0.1361	0.4703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKCO1_LARGE_INTESTINE	0	0.98	0.6064	FALSE	328	800	43	304	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	BAIAP2L1--CBLN4	16	3	BAIAP2L1	1267	chr7:98030114:-	CBLN4	23577	chr20:54575903:-	ONLY_REF_SPLICE	YES	23	0	0.45	1	0.198	0.0371	{Klijn_CCL:Colo-Rectal=1},BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-,CBLN4->cerebellin_4_precursor,chr20:54572496-54580528:-	SKCO1_LARGE_INTESTINE	0.45	1	0.2351	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	GPR39--C2orf27A	12	19	GPR39	2325	chr2:133175471:+	C2orf27A	14050	chr2:132508206:+	ONLY_REF_SPLICE	YES	48	0	0.39	1	0.1485	0.2352	GPR39->G_protein-coupled_receptor_39,chr2:133174147-133404132:+,C2orf27A->chr2:132479948-132524973:+,chromosome_2_open_reading_frame_27A	SKCO1_LARGE_INTESTINE	0.39	1	0.3837	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	HSP90AB1--MT-RNR2	13	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3333	0	0	1	0.1609	0.0124	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKCO1_LARGE_INTESTINE	0	1	0.1733	FALSE	13	9	0	364	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND6--MT-TE	6	27	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0743	0.3342	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKCO1_LARGE_INTESTINE	0.97	1	0.4085	FALSE	499	1288	110	792	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	LAMP1--MT-CO2	12	0	LAMP1	10059	chr13:113976687:+	MT-CO2	14590	chrM:7816:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1485	0	LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKCO1_LARGE_INTESTINE	1	1	0.1485	FALSE	0	0	0	6	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ATP8	11	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	13091	2	0	0.86	0.1361	0.0124	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKCO1_LARGE_INTESTINE	0	0.86	0.1485	FALSE	230	193	14	283	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO2	10	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	65	4	0.17	0.76	0.1238	0.0371	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKCO1_LARGE_INTESTINE	0.17	0.76	0.1609	FALSE	59	21	0	114	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	31	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	114	1	0.23	0.97	0.0371	0.3837	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKCO1_LARGE_INTESTINE	0.23	0.97	0.4208	FALSE	344	827	44	306	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND6--MT-TE	3	27	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0371	0.3342	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKCO1_LARGE_INTESTINE	0.97	1	0.3713	FALSE	499	1288	110	792	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	8	6	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.099	0.0743	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SKCO1_LARGE_INTESTINE	0.88	1	0.1733	FALSE	81	155	12	160	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO1	8	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	11601	28449	0	0	0.099	0.0124	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKCO1_LARGE_INTESTINE	0	0	0.1114	FALSE	183	104	9	328	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO2	8	0	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.099	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKCO1_LARGE_INTESTINE	1	1	0.099	FALSE	59	21	0	114	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	GPR39--C2orf27A	5	10	GPR39	1685	chr2:133174831:+	C2orf27A	14050	chr2:132508206:+	INCL_NON_REF_SPLICE	YES	69	0	0.18	1	0.0619	0.1238	GPR39->G_protein-coupled_receptor_39,chr2:133174147-133404132:+,C2orf27A->chr2:132479948-132524973:+,chromosome_2_open_reading_frame_27A	SKCO1_LARGE_INTESTINE	0.18	1	0.1857	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-RNR2	7	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0866	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKCO1_LARGE_INTESTINE	1	1	0.0866	FALSE	63	17	1	58	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16376	69	0	0.13	0.0743	0.0495	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKCO1_LARGE_INTESTINE	0	0.13	0.1238	FALSE	231	217	16	283	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO1	6	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	11664	28909	0	0	0.0743	0.0124	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKCO1_LARGE_INTESTINE	0	0	0.0867	FALSE	183	104	9	328	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	13	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3431	29187	0	0	0.0371	0.1609	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKCO1_LARGE_INTESTINE	0	0	0.198	FALSE	183	104	9	328	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	AP000350.4--PKM	5	4	AP000350.4	3774	chr22:24236611:-	PKM	7428	chr15:72523509:-	INCL_NON_REF_SPLICE	YES	0	25	1	0.26	0.0619	0.0495	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	SKCO1_LARGE_INTESTINE	0.26	1	0.1114	TRUE	0	0	0	14	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO1	5	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	13439	26797	0	0	0.0619	0.0495	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKCO1_LARGE_INTESTINE	0	0	0.1114	FALSE	183	104	9	328	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO2	6	0	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKCO1_LARGE_INTESTINE	1	1	0.0743	FALSE	59	21	0	114	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKCO1_LARGE_INTESTINE	1	1	0.0743	FALSE	499	1288	110	792	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	KANSL1--ARL17B	3	11	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	43	40	0.25	0.26	0.0371	0.1361	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SKCO1_LARGE_INTESTINE	0.25	0.26	0.1732	TRUE	105	90	7	93	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	11	MT-ATP6	1575	chrM:9101:+	MT-CO2	4747	chrM:7651:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0371	0.1361	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKCO1_LARGE_INTESTINE	0.93	1	0.1732	FALSE	59	21	0	114	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	7	MT-ND4	2281	chrM:12040:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	NO	92	92	0.11	0.11	0.0495	0.0866	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKCO1_LARGE_INTESTINE	0.11	0.11	0.1361	FALSE	213	207	15	279	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND5--MT-ND6	5	3	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0.0371	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SKCO1_LARGE_INTESTINE	1	1	0.099	FALSE	26	124	4	93	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	AP000350.4--PKM	4	5	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	23	1	0.28	0.0495	0.0619	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	SKCO1_LARGE_INTESTINE	0.28	1	0.1114	TRUE	0	0	0	14	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	KIAA1671--CTA-221G9.11	5	1	KIAA1671	11917	chr22:25445331:+	CTA-221G9.11	36322	chr22:25498885:-	ONLY_REF_SPLICE	YES	176	0	0.03	1	0.0619	0.0124	NEIGHBORS_OVERLAP:+:-:[10252],KIAA1671->KIAA1671,chr22:25348697-25593415:+,CTA-221G9.11->chr22:25498407-25508659:-	SKCO1_LARGE_INTESTINE	0.03	1	0.0743	FALSE	0	0	0	1	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	12476	6779	0	0	0.0619	0.0124	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKCO1_LARGE_INTESTINE	0	0	0.0743	FALSE	63	17	1	58	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	9	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	131	0	0.08	1	0.0371	0.1114	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKCO1_LARGE_INTESTINE	0.08	1	0.1485	FALSE	344	827	44	306	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	9	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	48	1	0.2	0.92	0.0371	0.1114	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKCO1_LARGE_INTESTINE	0.2	0.92	0.1485	FALSE	344	826	44	306	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKCO1_LARGE_INTESTINE	1	1	0.0619	FALSE	499	1288	110	792	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKCO1_LARGE_INTESTINE	1	1	0.0619	FALSE	499	1288	110	792	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-RNR2	4	3	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	12858	0	0	1	0.0495	0.0371	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKCO1_LARGE_INTESTINE	0	1	0.0866	FALSE	63	17	1	58	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17139	4	0	0.64	0.0495	0.0371	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKCO1_LARGE_INTESTINE	0	0.64	0.0866	FALSE	231	217	16	283	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND6--MT-TE	3	7	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0371	0.0866	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKCO1_LARGE_INTESTINE	0.91	1	0.1237	FALSE	499	1288	110	792	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	2	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	17640	0	0	1	0.0495	0.0248	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKCO1_LARGE_INTESTINE	0	1	0.0743	FALSE	231	217	16	283	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	11086	26389	0	0	0.0495	0.0124	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKCO1_LARGE_INTESTINE	0	0	0.0619	FALSE	183	104	9	328	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	11633	26092	0	0	0.0495	0.0124	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKCO1_LARGE_INTESTINE	0	0	0.0619	FALSE	183	104	9	328	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	66	4	0.11	0.67	0.0371	0.0619	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKCO1_LARGE_INTESTINE	0.11	0.67	0.099	FALSE	59	21	0	114	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13091	4	0	0.56	0.0495	0.0124	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKCO1_LARGE_INTESTINE	0	0.56	0.0619	FALSE	230	193	14	283	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	NPM1P24--SET	4	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	NO	29	768	0.15	0.01	0.0495	0.0124	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKCO1_LARGE_INTESTINE	0.01	0.15	0.0619	FALSE	0	0	0	434	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	JSRP1--RPS28	4	0	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SKCO1_LARGE_INTESTINE	1	1	0.0495	TRUE	0	1	0	84	1	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	LASP1--MT-ND4L	4	0	LASP1	12948	chr17:37075343:+	MT-ND4L	18644	chrM:10485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKCO1_LARGE_INTESTINE	1	1	0.0495	FALSE	0	0	0	7	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO2	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKCO1_LARGE_INTESTINE	1	1	0.0495	FALSE	59	21	0	114	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO2	4	0	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKCO1_LARGE_INTESTINE	1	1	0.0495	FALSE	59	21	0	114	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO2	4	0	MT-ATP6	1142	chrM:8668:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKCO1_LARGE_INTESTINE	1	1	0.0495	FALSE	59	21	0	114	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKCO1_LARGE_INTESTINE	1	1	0.0495	FALSE	499	1288	110	792	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKCO1_LARGE_INTESTINE	1	1	0.0495	FALSE	462	80	0	856	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0495	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKCO1_LARGE_INTESTINE	1	1	0.0495	FALSE	292	1546	117	613	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	12465	6759	0	0	0.0371	0.0371	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKCO1_LARGE_INTESTINE	0	0	0.0742	FALSE	63	17	1	58	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	12279	0	0	1	0.0371	0.0248	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKCO1_LARGE_INTESTINE	0	1	0.0619	FALSE	182	97	9	327	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND6--MT-TE	3	2	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0371	0.0248	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKCO1_LARGE_INTESTINE	0.83	1	0.0619	FALSE	499	1288	110	792	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-TA--MT-TC	3	2	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0.0248	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKCO1_LARGE_INTESTINE	1	1	0.0619	FALSE	462	80	0	856	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-TA--MT-TC	3	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0.0248	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKCO1_LARGE_INTESTINE	1	1	0.0619	FALSE	462	80	0	856	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13154	69	0	0.05	0.0371	0.0124	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKCO1_LARGE_INTESTINE	0	0.05	0.0495	FALSE	230	198	14	283	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	AC068580.6--MT-ND1	3	0	AC068580.6	2075	chr11:1782652:+	MT-ND1	6155	chrM:3322:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	AC068580.6->chr11:1781578-1783716:+,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SKCO1_LARGE_INTESTINE	1	1	0.0371	FALSE	0	0	0	3	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	AES--MT-ATP8	3	0	AES	8632	chr19:3053271:-	MT-ATP8	12115	chrM:8485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	AES->amino-terminal_enhancer_of_split,chr19:3052908-3063105:-,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKCO1_LARGE_INTESTINE	1	1	0.0371	FALSE	0	0	0	1	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	APP--MT-ND2	3	0	APP	11619	chr21:27394230:-	MT-ND2	32998	chrM:5292:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SKCO1_LARGE_INTESTINE	1	1	0.0371	FALSE	0	1	0	51	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	HSP90AB1--MT-RNR2	3	0	HSP90AB1	4399	chr6:44218222:+	MT-RNR2	11352	chrM:2225:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKCO1_LARGE_INTESTINE	1	1	0.0371	FALSE	0	0	0	11	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	JSRP1--RPS28	3	0	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SKCO1_LARGE_INTESTINE	1	1	0.0371	TRUE	0	1	0	84	1	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	LAMP1--MT-CO2	3	0	LAMP1	10039	chr13:113976667:+	MT-CO2	14579	chrM:7805:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKCO1_LARGE_INTESTINE	1	1	0.0371	FALSE	0	0	0	6	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKCO1_LARGE_INTESTINE	1	1	0.0371	FALSE	59	21	0	114	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	0	MT-ATP6	1138	chrM:8664:+	MT-CO2	4988	chrM:7892:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKCO1_LARGE_INTESTINE	1	1	0.0371	FALSE	59	21	0	114	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1123	chrM:8649:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKCO1_LARGE_INTESTINE	1	1	0.0371	FALSE	63	17	1	58	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1132	chrM:8658:+	MT-RNR2	5436	chrM:2425:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKCO1_LARGE_INTESTINE	1	1	0.0371	FALSE	63	17	1	58	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-CO2	3	0	MT-ND4	1217	chrM:10976:+	MT-CO2	5534	chrM:7741:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKCO1_LARGE_INTESTINE	1	1	0.0371	FALSE	5	1	0	19	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKCO1_LARGE_INTESTINE	1	1	0.0371	FALSE	344	821	44	306	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1002	chrM:14672:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKCO1_LARGE_INTESTINE	1	1	0.0371	FALSE	499	1288	110	792	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	COG8--SF3B3	2	3	COG8	6665	chr16:69366617:-	SF3B3	29943	chr16:70582273:+	ONLY_REF_SPLICE	YES	12	312	0.29	0.02	0.0248	0.0371	COG8->chr16:69354043-69373570:-,component_of_oligomeric_golgi_complex_8,SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3	SKCO1_LARGE_INTESTINE	0.02	0.29	0.0619	TRUE	0	0	0	1	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	COG8--SF3B3	2	3	COG8	5496	chr16:69368424:-	SF3B3	29943	chr16:70582273:+	ONLY_REF_SPLICE	YES	22	312	0.19	0.02	0.0248	0.0371	COG8->chr16:69354043-69373570:-,component_of_oligomeric_golgi_complex_8,SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3	SKCO1_LARGE_INTESTINE	0.02	0.19	0.0619	TRUE	0	0	0	1	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	FOXP1--LINC00877	1	5	FOXP1	7464	chr3:71408301:-	LINC00877	51642	chr3:72149161:-	ONLY_REF_SPLICE	YES	9	0	0.4	1	0.0124	0.0619	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,LINC00877->chr3:72084451-72291716:-,long_intergenic_non-protein_coding_RNA_877	SKCO1_LARGE_INTESTINE	0.4	1	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	CFL1--SNRPB	2	0	CFL1	6251	chr11:65623406:-	SNRPB	21897	chr20:2442439:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	CFL1->chr11:65590493-65629497:-,cofilin_1,SNRPB->chr20:2442280-2451499:-,small_nuclear_ribonucleoprotein_polypeptides_B_and_B1	SKCO1_LARGE_INTESTINE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	FOXP1--LINC00877	1	4	FOXP1	15873	chr3:71348971:-	LINC00877	55971	chr3:72110245:-	ONLY_REF_SPLICE	YES	15	4	0.25	0.56	0.0124	0.0495	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,LINC00877->chr3:72084451-72291716:-,long_intergenic_non-protein_coding_RNA_877	SKCO1_LARGE_INTESTINE	0.25	0.56	0.0619	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	GRHL2--YWHAZ	2	0	GRHL2	1358	chr8:102505017:+	YWHAZ	32633	chr8:101937267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GRHL2->chr8:102504660-102681954:+,grainyhead_like_transcription_factor_2,YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta	SKCO1_LARGE_INTESTINE	1	1	0.0248	TRUE	0	0	0	2	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	NIPBL--CDH18	2	0	NIPBL	1420	chr5:36877280:+	CDH18	72425	chr5:19544114:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,CDH18->cadherin_18,chr5:19473060-20575982:-	SKCO1_LARGE_INTESTINE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	NRIP1--AF127936.7	2	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKCO1_LARGE_INTESTINE	1	1	0.0248	FALSE	164	806	69	479	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	RPL30--LAPTM4B	2	0	RPL30	2527	chr8:99057171:-	LAPTM4B	17876	chr8:98863625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	SKCO1_LARGE_INTESTINE	1	1	0.0248	TRUE	0	1	0	5	0	TRUE	ACH-000400
SKCO1_LARGE_INTESTINE	GMDS-AS1--GMDS	1	1	GMDS-AS1	3357	chr6:2263918:+	GMDS	34514	chr6:2124965:-	ONLY_REF_SPLICE	YES	16	63	0.11	0.03	0.0124	0.0124	GTEx_FI:{Salivary_Gland=[count:2=pct:5.1],Thyroid=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},LOCAL_INVERSION:+:-:[56],GMDS-AS1->GMDS_antisense_RNA_1_(head_to_head),chr6:2245982-2482256:+,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	SKCO1_LARGE_INTESTINE	0.03	0.11	0.0248	TRUE	2	2	2	3	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	LCOR--TM9SF3	1	1	LCOR	3703	chr10:98667504:+	TM9SF3	24724	chr10:98336586:-	ONLY_REF_SPLICE	NO	16	101	0.11	0.02	0.0124	0.0124	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LCOR->chr10:98592017-98740800:+,ligand_dependent_nuclear_receptor_corepressor,TM9SF3->chr10:98277866-98347209:-,transmembrane_9_superfamily_member_3	SKCO1_LARGE_INTESTINE	0.02	0.11	0.0248	TRUE	0	0	0	1	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	LCOR--TM9SF3	1	1	LCOR	2220	chr10:98593236:+	TM9SF3	26209	chr10:98325183:-	ONLY_REF_SPLICE	YES	14	322	0.12	0.01	0.0124	0.0124	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LCOR->chr10:98592017-98740800:+,ligand_dependent_nuclear_receptor_corepressor,TM9SF3->chr10:98277866-98347209:-,transmembrane_9_superfamily_member_3	SKCO1_LARGE_INTESTINE	0.01	0.12	0.0248	FALSE	1	0	0	1	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	STYXL1--POR	1	1	STYXL1	1193	chr7:75677130:-	POR	23540	chr7:75583307:+	ONLY_REF_SPLICE	NO	86	7	0.02	0.22	0.0124	0.0124	LOCAL_INVERSION:-:+:[9483],STYXL1->chr7:75625656-75677322:-,serine/threonine/tyrosine_interacting-like_1,POR->chr7:75528518-75616173:+,cytochrome_p450_oxidoreductase	SKCO1_LARGE_INTESTINE	0.02	0.22	0.0248	TRUE	0	1	0	1	0	FALSE	ACH-000400
SKCO1_LARGE_INTESTINE	TRNAU1AP--TAF12	1	1	TRNAU1AP	1653	chr1:28880249:+	TAF12	17350	chr1:28948677:-	ONLY_REF_SPLICE	NO	20	4	0.09	0.33	0.0124	0.0124	LOCAL_INVERSION:+:-:[10784],TRNAU1AP->chr1:28879597-28905051:+,tRNA_selenocysteine_1_associated_protein_1,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	SKCO1_LARGE_INTESTINE	0.09	0.33	0.0248	TRUE	0	0	0	2	0	TRUE	ACH-000400
HCC1806_BREAST	TAX1BP1--AHCY	579	53	TAX1BP1	1939	chr7:27779888:+	AHCY	34968	chr20:32883391:-	ONLY_REF_SPLICE	YES	56	227	0.92	0.74	4.3627	0.3993	TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+,AHCY->adenosylhomocysteinase,chr20:32868074-32899608:-	HCC1806_BREAST	0.74	0.92	4.762	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MIR205HG--DNAJC27-AS1	543	0	MIR205HG	1269	chr1:209602433:+	DNAJC27-AS1	13925	chr2:25251418:+	ONLY_REF_SPLICE	YES	0	0	1	1	4.0914	0	HGNC_GENEFAM,MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,DNAJC27-AS1->DNAJC27_antisense_RNA_1,chr2:25194259-25262563:+	HCC1806_BREAST	1	1	4.0914	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	4	1966	MT-CO1	1653	chrM:6556:+	MT-ND2	5578	chrM:4505:+	INCL_NON_REF_SPLICE	YES	30741	0	0.06	1	0.0301	14.8134	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0.06	1	14.8435	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	3	1769	MT-CO1	1632	chrM:6535:+	MT-ND2	5681	chrM:4608:+	INCL_NON_REF_SPLICE	YES	26206	7718	0.06	0.19	0.0226	13.3291	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0.06	0.19	13.3517	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	RFT1--UQCRC2	403	126	RFT1	10737	chr3:53137969:-	UQCRC2	30713	chr16:21982846:+	ONLY_REF_SPLICE	YES	43	228	0.92	0.7	3.0365	0.9494	{Klijn_CCL:Breast=1},RFT1->RFT1_homolog,chr3:53122499-53164478:-,UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II	HCC1806_BREAST	0.7	0.92	3.9859	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	3	1612	MT-CO1	1554	chrM:6457:+	MT-ND2	5587	chrM:4514:+	INCL_NON_REF_SPLICE	YES	16072	0	0.09	1	0.0226	12.1461	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0.09	1	12.1687	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	KRT5--HNRNPA1P48	400	2	KRT5	6489	chr12:52908983:-	HNRNPA1P48	11083	chr16:51680636:+	INCL_NON_REF_SPLICE	YES	1360	164	0.23	0.71	3.0139	0.0151	KRT5->chr12:52908359-52914471:-,keratin_5,HNRNPA1P48->chr16:51679667-51681043:+,heterogeneous_nuclear_ribonucleoprotein_A1_pseudogene_48	HCC1806_BREAST	0.23	0.71	3.029	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	57	1125	MT-CO1	1507	chrM:6410:+	MT-ND2	5681	chrM:4608:+	INCL_NON_REF_SPLICE	YES	12578	7718	0.09	0.13	0.4295	8.4767	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0.09	0.13	8.9062	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	37	1122	MT-CO1	1506	chrM:6409:+	MT-ND2	5680	chrM:4607:+	INCL_NON_REF_SPLICE	YES	12535	7608	0.08	0.13	0.2788	8.4541	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0.08	0.13	8.7329	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	20	1157	MT-CO1	1504	chrM:6407:+	MT-ND2	5678	chrM:4605:+	INCL_NON_REF_SPLICE	YES	12334	7087	0.09	0.14	0.1507	8.7178	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0.09	0.14	8.8685	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	6	1161	MT-CO1	1503	chrM:6406:+	MT-ND2	5677	chrM:4604:+	INCL_NON_REF_SPLICE	YES	12255	6920	0.09	0.14	0.0452	8.7479	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0.09	0.14	8.7931	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	CDCA5--AY269186.1	255	103	CDCA5	1801	chr11:64850836:-	AY269186.1	11765	chr3:65642:+	ONLY_REF_SPLICE	YES	33	0	0.92	1	1.9214	0.7761	CDCA5->cell_division_cycle_associated_5,chr11:64833772-64851636:-,AY269186.1->chr3:65431-66175:+	HCC1806_BREAST	0.92	1	2.6975	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TC	203	28	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5296	0.211	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1806_BREAST	1	1	1.7406	FALSE	462	80	0	856	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	10	679	MT-CO1	1404	chrM:6307:+	MT-ND2	5593	chrM:4520:+	INCL_NON_REF_SPLICE	YES	5630	0	0.11	1	0.0753	5.1161	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0.11	1	5.1914	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	SMURF2--CEP112	150	9	SMURF2	3361	chr17:62602720:-	CEP112	68147	chr17:63637183:-	ONLY_REF_SPLICE	YES	5	49	0.97	0.76	1.1302	0.0678	SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	HCC1806_BREAST	0.76	0.97	1.198	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	117	130	MT-CO3	1123	chrM:9329:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	18	0	0.93	1	0.8816	0.9795	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.93	1	1.8611	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	POLA2--CAPN1	88	32	POLA2	7760	chr11:65047097:+	CAPN1	35831	chr11:64975526:+	ONLY_REF_SPLICE	YES	48	819	0.71	0.13	0.6631	0.2411	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[49756],POLA2->chr11:65029233-65073060:+,polymerase_(DNA)_alpha_2,_accessory_subunit,CAPN1->calpain_1,chr11:64948037-64979477:+	HCC1806_BREAST	0.13	0.71	0.9042	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	LDLRAD3--TCP11L1	91	14	LDLRAD3	3412	chr11:36057799:+	TCP11L1	23499	chr11:33078661:+	ONLY_REF_SPLICE	YES	21	6	0.83	0.95	0.6857	0.1055	LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,TCP11L1->chr11:33060963-33127489:+,t-complex_11_like_1	HCC1806_BREAST	0.83	0.95	0.7912	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	WNK1--CWC22	80	26	WNK1	2732	chr12:863490:+	CWC22	46384	chr2:180853371:-	ONLY_REF_SPLICE	YES	41	98	0.72	0.52	0.6028	0.1959	{Klijn_CCL:Breast=1},WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,CWC22->CWC22_homolog,_spliceosome-associated_protein,chr2:180809603-180871840:-	HCC1806_BREAST	0.52	0.72	0.7987	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	55	118	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	22	26	0.89	0.87	0.4144	0.8891	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.87	0.89	1.3035	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	SMURF2--CEP112	72	15	SMURF2	3361	chr17:62602720:-	CEP112	51190	chr17:63923807:-	ONLY_REF_SPLICE	YES	5	1	0.95	0.99	0.5425	0.113	SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	HCC1806_BREAST	0.95	0.99	0.6555	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	CYB561A3--CXCL16	75	1	CYB561A3	5097	chr11:61125675:-	CXCL16	22184	chr17:4637289:-	INCL_NON_REF_SPLICE	YES	45	89	0.63	0.46	0.5651	0.0075	GTEx&tcga_normals:41/3694=1.11%,GTEx_FI:{Lung=[count:16=pct:9.6],Blood=[count:10=pct:5.7],Spleen=[count:10=pct:8.9],Whole_Blood=[count:8=pct:6.1],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Liver=[count:2=pct:1.7],Breast=[count:2=pct:1.8],Esophagus=[count:2=pct:0.5],Stomach=[count:1=pct:1.1],Salivary_Gland=[count:1=pct:2.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=17;pct=0.20%;dist=Whole_Blood=5,Lung=4,Spleen=4,Artery_-_Aorta=1,Brain_-_Hippocampus=1,Artery_-_Coronary=1,Liver=1},CYB561A3->chr11:61116217-61129771:-,cytochrome_b561_family_member_A3,CXCL16->C-X-C_motif_chemokine_ligand_16,chr17:4636821-4643217:-	HCC1806_BREAST	0.46	0.63	0.5726	TRUE	43	61	0	4	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TN	37	135	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2788	1.0172	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1806_BREAST	1	1	1.296	FALSE	369	2501	205	193	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	35	119	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	25	26	0.86	0.86	0.2637	0.8966	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.86	0.86	1.1603	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	PRRT3-AS1--ARPC4-TTLL3	55	25	PRRT3-AS1	2066	chr3:9990153:+	ARPC4-TTLL3	12882	chr3:9854627:+	ONLY_REF_SPLICE	YES	4	17	0.95	0.82	0.4144	0.1884	PRRT3-AS1->PRRT3_antisense_RNA_1,chr3:9989088-9996471:+,ARPC4-TTLL3->ARPC4-TTLL3_readthrough,chr3:9834766-9877085:+	HCC1806_BREAST	0.82	0.95	0.6028	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	4	214	MT-CO3	1684	chrM:9890:+	MT-ATP6	4731	chrM:8473:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	1.6124	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	1	1	1.6425	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	20	141	MT-CO3	1322	chrM:9528:+	MT-ATP6	5065	chrM:8807:+	INCL_NON_REF_SPLICE	YES	32	269	0.83	0.37	0.1507	1.0624	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.37	0.83	1.2131	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	TIMM23B--LINC00843	50	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3767	0.1055	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1806_BREAST	1	1	0.4822	TRUE	508	994	45	981	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	52	4	MT-CO1	1653	chrM:6556:+	MT-ND2	6453	chrM:5380:+	INCL_NON_REF_SPLICE	YES	30741	25	0	0.69	0.3918	0.0301	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.69	0.4219	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TN	36	66	MT-TA	1054	chrM:5602:-	MT-TN	4092	chrM:5707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2713	0.4973	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1806_BREAST	1	1	0.7686	FALSE	369	2501	205	193	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TN	31	81	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2336	0.6103	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1806_BREAST	1	1	0.8439	FALSE	369	2501	205	193	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TN	40	42	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3014	0.3165	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1806_BREAST	1	1	0.6179	FALSE	369	2501	205	193	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	3	187	MT-CO3	1642	chrM:9848:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0226	1.409	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.99	1	1.4316	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TC	39	32	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2939	0.2411	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1806_BREAST	1	1	0.535	FALSE	462	80	0	856	0	FALSE	ACH-000624
HCC1806_BREAST	PTPRJ--LPXN	47	0	PTPRJ	1448	chr11:48002560:+	LPXN	37103	chr11:58331674:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3541	0	{Klijn_CCL:Breast=1},PTPRJ->Oncogene{Bushman},chr11:48002113-48189670:+,protein_tyrosine_phosphatase,_receptor_type_J,LPXN->chr11:58294344-58345693:-,leupaxin	HCC1806_BREAST	1	1	0.3541	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	CDCA5--AY269186.1	18	106	CDCA5	1801	chr11:64850836:-	AY269186.1	11558	chr3:65435:+	INCL_NON_REF_SPLICE	YES	33	0	0.79	1	0.1356	0.7987	CDCA5->cell_division_cycle_associated_5,chr11:64833772-64851636:-,AY269186.1->chr3:65431-66175:+	HCC1806_BREAST	0.79	1	0.9343	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	4	161	MT-CO3	1220	chrM:9426:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	32	0	0.84	1	0.0301	1.2131	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.84	1	1.2432	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	10	131	MT-CO3	1220	chrM:9426:+	MT-ATP6	5191	chrM:8933:+	INCL_NON_REF_SPLICE	YES	32	153	0.82	0.48	0.0753	0.9871	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.48	0.82	1.0624	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	8	137	MT-CO3	1220	chrM:9426:+	MT-ATP6	5072	chrM:8814:+	INCL_NON_REF_SPLICE	YES	32	249	0.82	0.37	0.0603	1.0323	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.37	0.82	1.0926	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	4	147	MT-CO3	1220	chrM:9426:+	MT-ATP6	4973	chrM:8715:+	INCL_NON_REF_SPLICE	YES	32	282	0.83	0.35	0.0301	1.1076	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.35	0.83	1.1377	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TC--MT-TY	40	1	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3014	0.0075	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.3089	FALSE	51	280	19	36	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	6	129	MT-CO3	1207	chrM:9413:+	MT-ATP6	5182	chrM:8924:+	INCL_NON_REF_SPLICE	YES	46	148	0.75	0.48	0.0452	0.972	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.48	0.75	1.0172	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	FAM222B--SEZ6	31	26	FAM222B	4726	chr17:27139227:-	SEZ6	21946	chr17:27296970:-	ONLY_REF_SPLICE	YES	10	0	0.85	1	0.2336	0.1959	LOCAL_REARRANGEMENT:-:[99669],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,SEZ6->chr17:27281919-27333458:-,seizure_related_6_homolog	HCC1806_BREAST	0.85	1	0.4295	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	5	130	MT-CO3	1152	chrM:9358:+	MT-ATP6	5028	chrM:8770:+	INCL_NON_REF_SPLICE	YES	31	233	0.81	0.37	0.0377	0.9795	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.37	0.81	1.0172	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	6	124	MT-CO3	1113	chrM:9319:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	12	0	0.92	1	0.0452	0.9343	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.92	1	0.9795	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	4	132	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	15	86	0.9	0.61	0.0301	0.9946	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.61	0.9	1.0247	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	11	103	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	6	229	0.95	0.33	0.0829	0.7761	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.33	0.95	0.859	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	16	80	MT-CO1	2051	chrM:6954:+	MT-ND2	6297	chrM:5224:+	INCL_NON_REF_SPLICE	YES	26699	397	0	0.19	0.1206	0.6028	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.19	0.7234	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	6	120	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	22	109	0.85	0.54	0.0452	0.9042	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.54	0.85	0.9494	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	5	124	MT-CO3	1220	chrM:9426:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	NO	32	24	0.8	0.84	0.0377	0.9343	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.8	0.84	0.972	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	4	128	MT-CO3	1136	chrM:9342:+	MT-ATP6	5002	chrM:8744:+	INCL_NON_REF_SPLICE	YES	22	265	0.86	0.33	0.0301	0.9645	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.33	0.86	0.9946	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	4	125	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	47	27	0.73	0.83	0.0301	0.9419	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.73	0.83	0.972	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	3	128	MT-CO3	1205	chrM:9411:+	MT-ATP6	5179	chrM:8921:+	INCL_NON_REF_SPLICE	YES	47	144	0.74	0.48	0.0226	0.9645	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.48	0.74	0.9871	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	11	95	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	2	35	0.98	0.75	0.0829	0.7158	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.75	0.98	0.7987	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	CCDC57--CSNK1D	33	6	CCDC57	12407	chr17:80136903:-	CSNK1D	58830	chr17:80201588:-	INCL_NON_REF_SPLICE	YES	44	56	0.47	0.41	0.2486	0.0452	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_REARRANGEMENT:-:[26193],CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	HCC1806_BREAST	0.41	0.47	0.2938	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	3	125	MT-CO3	1220	chrM:9426:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	32	26	0.8	0.83	0.0226	0.9419	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.8	0.83	0.9645	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	8	105	MT-CO3	1083	chrM:9289:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	3	231	0.97	0.33	0.0603	0.7912	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.33	0.97	0.8515	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	TIMM23--RP11-464F9.1	34	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	81	6	0.3	0.85	0.2562	0.0075	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC1806_BREAST	0.3	0.85	0.2637	TRUE	519	3926	326	965	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	32	8	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	29	2	0.58	0.95	0.2411	0.0603	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.58	0.95	0.3014	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	3	123	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	47	19	0.73	0.87	0.0226	0.9268	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.73	0.87	0.9494	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	BRE--DPYSL5	31	9	BRE	10577	chr2:28352247:+	DPYSL5	24650	chr2:27121364:+	ONLY_REF_SPLICE	YES	44	0	0.48	1	0.2336	0.0678	BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+,DPYSL5->chr2:27070615-27173219:+,dihydropyrimidinase_like_5	HCC1806_BREAST	0.48	1	0.3014	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	3	120	MT-CO3	1088	chrM:9294:+	MT-ATP6	4831	chrM:8573:+	INCL_NON_REF_SPLICE	YES	6	0	0.95	1	0.0226	0.9042	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.95	1	0.9268	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TC--MT-TY	14	76	MT-TC	1061	chrM:5766:-	MT-TY	4075	chrM:5883:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1055	0.5726	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.6781	FALSE	51	280	19	36	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	3	119	MT-CO3	1138	chrM:9344:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	22	39	0.85	0.76	0.0226	0.8966	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.76	0.85	0.9192	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	3	119	MT-CO3	1083	chrM:9289:+	MT-ATP6	4730	chrM:8472:+	INCL_NON_REF_SPLICE	NO	3	0	0.98	1	0.0226	0.8966	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.98	1	0.9192	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	3	118	MT-CO3	1142	chrM:9348:+	MT-ATP6	5336	chrM:9078:+	INCL_NON_REF_SPLICE	YES	25	17	0.83	0.88	0.0226	0.8891	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.83	0.88	0.9117	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-ND6--MT-TE	31	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2336	0.0226	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1806_BREAST	0.97	1	0.2562	FALSE	499	1288	110	792	0	FALSE	ACH-000624
HCC1806_BREAST	PPP1R13L--PVR	28	15	PPP1R13L	10242	chr19:45895138:-	PVR	20383	chr19:45153081:+	ONLY_REF_SPLICE	YES	100	20	0.3	0.68	0.211	0.113	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,PVR->chr19:45147098-45166850:+,poliovirus_receptor	HCC1806_BREAST	0.3	0.68	0.324	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TC	31	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2336	0.0151	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1806_BREAST	1	1	0.2487	FALSE	462	80	0	856	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	27	17	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	22	2	0.67	0.96	0.2034	0.1281	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.67	0.96	0.3315	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	SMURF2--CEP112	30	4	SMURF2	1240	chr17:62657947:-	CEP112	51190	chr17:63923807:-	ONLY_REF_SPLICE	YES	1	1	0.97	0.97	0.226	0.0301	SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	HCC1806_BREAST	0.97	0.97	0.2561	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	4	107	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	12	16	0.9	0.87	0.0301	0.8062	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.87	0.9	0.8363	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	5	102	MT-CO3	1090	chrM:9296:+	MT-ATP6	5185	chrM:8927:+	INCL_NON_REF_SPLICE	YES	6	151	0.95	0.41	0.0377	0.7686	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.41	0.95	0.8063	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	11	78	MT-CO3	1065	chrM:9271:+	MT-ATP6	5333	chrM:9075:+	INCL_NON_REF_SPLICE	YES	3	17	0.97	0.84	0.0829	0.5877	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.84	0.97	0.6706	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	C22orf39--ARVCF	28	6	C22orf39	24609	chr22:19346859:-	ARVCF	33494	chr22:19998031:-	ONLY_REF_SPLICE	YES	27	0	0.56	1	0.211	0.0452	C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,ARVCF->armadillo_repeat_gene_deleted_in_velocardiofacial_syndrome,chr22:19957419-20004331:-	HCC1806_BREAST	0.56	1	0.2562	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TN	20	34	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1507	0.2562	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1806_BREAST	1	1	0.4069	FALSE	369	2501	205	193	0	FALSE	ACH-000624
HCC1806_BREAST	GALNT18--SBF2	26	6	GALNT18	6283	chr11:11454168:-	SBF2	35186	chr11:9990092:-	ONLY_REF_SPLICE	YES	4	5	0.89	0.86	0.1959	0.0452	GALNT18->chr11:11292423-11643552:-,polypeptide_N-acetylgalactosaminyltransferase_18,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	HCC1806_BREAST	0.86	0.89	0.2411	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	8	78	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	3	5	0.97	0.95	0.0603	0.5877	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.95	0.97	0.648	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	13	55	MT-CO1	1653	chrM:6556:+	MT-ND2	6220	chrM:5147:+	INCL_NON_REF_SPLICE	YES	30741	873	0	0.07	0.098	0.4144	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.07	0.5124	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	3	95	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	2	24	0.98	0.8	0.0226	0.7158	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.8	0.98	0.7384	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	RP11-603B24.1--HERC2P3	24	8	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	24	1	0.57	0.1808	0.0603	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	HCC1806_BREAST	0.57	1	0.2411	TRUE	27	10	1	20	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	11	59	MT-CO1	1619	chrM:6522:+	MT-ND2	5803	chrM:4730:+	INCL_NON_REF_SPLICE	YES	23405	17962	0	0	0.0829	0.4446	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0	0.5275	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-ND6--MT-TE	21	16	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1582	0.1206	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1806_BREAST	0.97	1	0.2788	FALSE	499	1288	110	792	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	4	82	MT-CO1	1680	chrM:6583:+	MT-ND2	5953	chrM:4880:+	INCL_NON_REF_SPLICE	YES	31528	11438	0	0.01	0.0301	0.6179	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.01	0.648	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TC--MT-TY	3	85	MT-TC	1065	chrM:5762:-	MT-TY	4067	chrM:5891:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0.6405	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.6631	FALSE	51	280	19	36	0	FALSE	ACH-000624
HCC1806_BREAST	CD151--DRD4	19	20	CD151	5001	chr11:836843:+	DRD4	13631	chr11:640401:+	ONLY_REF_SPLICE	YES	536	6	0.07	0.87	0.1432	0.1507	CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+,DRD4->chr11:637293-640706:+,dopamine_receptor_D4	HCC1806_BREAST	0.07	0.87	0.2939	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TN	24	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1808	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1806_BREAST	1	1	0.1808	FALSE	369	2501	205	193	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	8	63	MT-CO1	1917	chrM:6820:+	MT-ND2	6355	chrM:5282:+	INCL_NON_REF_SPLICE	NO	33256	234	0	0.23	0.0603	0.4747	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.23	0.535	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	FAM222B--SEZ6	17	26	FAM222B	5825	chr17:27117396:-	SEZ6	21946	chr17:27296970:-	ONLY_REF_SPLICE	YES	11	0	0.8	1	0.1281	0.1959	LOCAL_REARRANGEMENT:-:[99669],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,SEZ6->chr17:27281919-27333458:-,seizure_related_6_homolog	HCC1806_BREAST	0.8	1	0.324	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-TC--MT-TY	3	81	MT-TC	1059	chrM:5768:-	MT-TY	4060	chrM:5898:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0.6103	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.6329	FALSE	51	280	19	36	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	13	40	MT-CO1	1699	chrM:6602:+	MT-ND2	6400	chrM:5327:+	INCL_NON_REF_SPLICE	YES	30649	98	0	0.35	0.098	0.3014	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.35	0.3994	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO2--MT-ND2	23	0	MT-CO2	1240	chrM:7825:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1733	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	1	1	0.1733	FALSE	105	46	5	21	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	13	40	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	22	3	0.71	0.95	0.098	0.3014	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.71	0.95	0.3994	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	4	76	MT-CO3	1061	chrM:9267:+	MT-ATP6	5343	chrM:9085:+	INCL_NON_REF_SPLICE	YES	3	15	0.96	0.84	0.0301	0.5726	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.84	0.96	0.6027	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	9	54	MT-CO1	1564	chrM:6467:+	MT-ND2	5972	chrM:4899:+	INCL_NON_REF_SPLICE	YES	17069	10062	0	0.01	0.0678	0.4069	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.01	0.4747	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	4	73	MT-CO3	1040	chrM:9246:+	MT-ATP6	4775	chrM:8517:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0301	0.55	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.99	1	0.5801	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	GPR39--NCKAP5	20	6	GPR39	2325	chr2:133175471:+	NCKAP5	39094	chr2:133430878:-	ONLY_REF_SPLICE	YES	21	0	0.55	1	0.1507	0.0452	LOCAL_INVERSION:+:-:[25242],GPR39->G_protein-coupled_receptor_39,chr2:133174147-133404132:+,NCKAP5->NCK_associated_protein_5,chr2:133429374-134326034:-	HCC1806_BREAST	0.55	1	0.1959	TRUE	0	0	0	2	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	9	50	MT-CO1	1582	chrM:6485:+	MT-ND2	5999	chrM:4926:+	INCL_NON_REF_SPLICE	YES	18757	7967	0	0.01	0.0678	0.3767	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.01	0.4445	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	9	50	MT-CO1	1939	chrM:6842:+	MT-ND2	6374	chrM:5301:+	INCL_NON_REF_SPLICE	YES	32691	168	0	0.26	0.0678	0.3767	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.26	0.4445	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	21	1	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	1	3	0.96	0.88	0.1582	0.0075	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.88	0.96	0.1657	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	CDCA5--AY269186.1	2	75	CDCA5	1680	chr11:64850957:-	AY269186.1	11765	chr3:65642:+	ONLY_REF_SPLICE	YES	46	0	0.63	1	0.0151	0.5651	CDCA5->cell_division_cycle_associated_5,chr11:64833772-64851636:-,AY269186.1->chr3:65431-66175:+	HCC1806_BREAST	0.63	1	0.5802	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	6	57	MT-CO1	1603	chrM:6506:+	MT-ND2	5988	chrM:4915:+	INCL_NON_REF_SPLICE	YES	21251	8864	0	0.01	0.0452	0.4295	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.01	0.4747	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TN	5	61	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.4596	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1806_BREAST	1	1	0.4973	FALSE	369	2501	205	193	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TC	11	36	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0829	0.2713	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1806_BREAST	1	1	0.3542	FALSE	462	80	0	856	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	4	63	MT-CO1	1641	chrM:6544:+	MT-ND2	5742	chrM:4669:+	INCL_NON_REF_SPLICE	YES	28439	14538	0	0	0.0301	0.4747	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0	0.5048	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	CD151--DRD4	12	30	CD151	5001	chr11:836843:+	DRD4	12663	chr11:639433:+	ONLY_REF_SPLICE	YES	536	2	0.07	0.95	0.0904	0.226	CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+,DRD4->chr11:637293-640706:+,dopamine_receptor_D4	HCC1806_BREAST	0.07	0.95	0.3164	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	18	5	MT-CO1	1642	chrM:6545:+	MT-ND2	6442	chrM:5369:+	INCL_NON_REF_SPLICE	YES	28514	36	0	0.39	0.1356	0.0377	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.39	0.1733	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	8	44	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	1	11	0.98	0.83	0.0603	0.3315	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.83	0.98	0.3918	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TC	11	32	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0829	0.2411	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1806_BREAST	1	1	0.324	FALSE	462	80	0	856	0	FALSE	ACH-000624
HCC1806_BREAST	HBEGF--CTC-329D1.3	17	7	HBEGF	3149	chr5:139722220:-	CTC-329D1.3	11848	chr5:139728125:-	ONLY_REF_SPLICE	YES	33	0	0.42	1	0.1281	0.0527	LOCAL_REARRANGEMENT:-:[1853],HBEGF->chr5:139712428-139726216:-,heparin_binding_EGF_like_growth_factor,CTC-329D1.3->chr5:139728069-139737379:-	HCC1806_BREAST	0.42	1	0.1808	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	FAM222B--SEZ6	16	9	FAM222B	3499	chr17:27161311:-	SEZ6	21946	chr17:27296970:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.1206	0.0678	LOCAL_REARRANGEMENT:-:[99669],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,SEZ6->chr17:27281919-27333458:-,seizure_related_6_homolog	HCC1806_BREAST	0.96	1	0.1884	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TN	3	61	MT-TA	1051	chrM:5605:-	MT-TN	4092	chrM:5707:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0226	0.4596	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1806_BREAST	1	1	0.4822	FALSE	369	2501	205	193	0	FALSE	ACH-000624
HCC1806_BREAST	C15orf57--CBX3	16	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	20	15	0.55	0.62	0.1206	0.0603	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1806_BREAST	0.55	0.62	0.1809	TRUE	267	562	48	632	0	FALSE	ACH-000624
HCC1806_BREAST	FAM222B--SEZ6	17	4	FAM222B	2441	chr17:27169700:-	SEZ6	21946	chr17:27296970:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1281	0.0301	LOCAL_REARRANGEMENT:-:[99669],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,SEZ6->chr17:27281919-27333458:-,seizure_related_6_homolog	HCC1806_BREAST	1	1	0.1582	TRUE	0	1	0	1	1	TRUE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	5	52	MT-CO1	1533	chrM:6436:+	MT-ND2	5968	chrM:4895:+	INCL_NON_REF_SPLICE	YES	14795	10362	0	0.01	0.0377	0.3918	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.01	0.4295	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	4	56	MT-CO1	1653	chrM:6556:+	MT-ND2	6178	chrM:5105:+	INCL_NON_REF_SPLICE	YES	30741	1503	0	0.04	0.0301	0.4219	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.04	0.452	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	CD151--DRD4	15	11	CD151	4600	chr11:836442:+	DRD4	13631	chr11:640401:+	ONLY_REF_SPLICE	YES	571	6	0.04	0.81	0.113	0.0829	CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+,DRD4->chr11:637293-640706:+,dopamine_receptor_D4	HCC1806_BREAST	0.04	0.81	0.1959	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	RIF1--PKD1L1	17	1	RIF1	20869	chr2:152308219:+	PKD1L1	87188	chr7:47898483:-	ONLY_REF_SPLICE	YES	11	0	0.62	1	0.1281	0.0075	RIF1->chr2:152266397-152364527:+,replication_timing_regulatory_factor_1,PKD1L1->chr7:47814250-47988088:-,polycystin_1_like_1,_transient_receptor_potential_channel_interacting	HCC1806_BREAST	0.62	1	0.1356	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	6	44	MT-CO1	1588	chrM:6491:+	MT-ND2	6131	chrM:5058:+	INCL_NON_REF_SPLICE	YES	19434	2653	0	0.02	0.0452	0.3315	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.02	0.3767	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TN	4	52	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0.3918	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1806_BREAST	1	1	0.4219	FALSE	369	2501	205	193	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	3	55	MT-CO1	1487	chrM:6390:+	MT-ND2	5718	chrM:4645:+	INCL_NON_REF_SPLICE	YES	10896	12502	0.01	0	0.0226	0.4144	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.01	0.437	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	3	55	MT-CO1	1656	chrM:6559:+	MT-ND2	6256	chrM:5183:+	INCL_NON_REF_SPLICE	YES	30859	674	0	0.08	0.0226	0.4144	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.08	0.437	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	4	51	MT-CO1	1598	chrM:6501:+	MT-ND2	6015	chrM:4942:+	INCL_NON_REF_SPLICE	YES	20734	7220	0	0.01	0.0301	0.3843	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.01	0.4144	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	ARHGEF10L--PADI6	14	9	ARHGEF10L	30160	chr1:17983203:+	PADI6	42857	chr1:17701922:+	ONLY_REF_SPLICE	YES	29	0	0.44	1	0.1055	0.0678	ARHGEF10L->Rho_guanine_nucleotide_exchange_factor_10_like,chr1:17866330-18024369:+,PADI6->chr1:17698691-17728195:+,peptidyl_arginine_deiminase_6	HCC1806_BREAST	0.44	1	0.1733	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	16	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1206	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	1	1	0.1206	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TC--MT-TY	16	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1206	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.1206	FALSE	51	280	19	36	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	4	45	MT-CO3	1020	chrM:9226:+	MT-ATP6	5206	chrM:8948:+	INCL_NON_REF_SPLICE	YES	1	113	0.98	0.3	0.0301	0.3391	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.3	0.98	0.3692	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	11	17	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	39	2	0.42	0.93	0.0829	0.1281	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.42	0.93	0.211	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TC	7	33	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0.2486	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1806_BREAST	1	1	0.3013	FALSE	462	80	0	856	0	FALSE	ACH-000624
HCC1806_BREAST	MT-ND6--MT-TE	6	36	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0.2713	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1806_BREAST	1	1	0.3165	FALSE	499	1288	110	792	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	4	43	MT-CO1	1642	chrM:6545:+	MT-ND2	6241	chrM:5168:+	INCL_NON_REF_SPLICE	YES	28514	797	0	0.06	0.0301	0.324	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.06	0.3541	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	5	37	MT-CO1	1656	chrM:6559:+	MT-ND2	6382	chrM:5309:+	INCL_NON_REF_SPLICE	YES	30859	150	0	0.22	0.0377	0.2788	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.22	0.3165	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	3	45	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	1	24	0.98	0.67	0.0226	0.3391	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.67	0.98	0.3617	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	5	36	MT-CO1	1653	chrM:6556:+	MT-ND2	6394	chrM:5321:+	INCL_NON_REF_SPLICE	YES	30741	113	0	0.27	0.0377	0.2713	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.27	0.309	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	14	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1055	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	1	1	0.1055	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	6	31	MT-CO1	1520	chrM:6423:+	MT-ND2	6400	chrM:5327:+	INCL_NON_REF_SPLICE	YES	13466	98	0	0.27	0.0452	0.2336	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.27	0.2788	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	3	43	MT-CO1	1622	chrM:6525:+	MT-ND2	6225	chrM:5152:+	INCL_NON_REF_SPLICE	YES	24104	835	0	0.05	0.0226	0.324	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.05	0.3466	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	10	15	MT-CO1	1343	chrM:6246:+	MT-ND2	6241	chrM:5168:+	INCL_NON_REF_SPLICE	YES	3300	797	0.01	0.03	0.0753	0.113	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0.01	0.03	0.1883	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	3	42	MT-CO1	1578	chrM:6481:+	MT-ND2	6223	chrM:5150:+	INCL_NON_REF_SPLICE	YES	18324	839	0	0.05	0.0226	0.3165	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.05	0.3391	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	4	38	MT-CO3	1123	chrM:9329:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	YES	18	3	0.7	0.93	0.0301	0.2863	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.7	0.93	0.3164	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	12	5	MT-CO1	1316	chrM:6219:+	MT-ND2	6410	chrM:5337:+	INCL_NON_REF_SPLICE	YES	2429	66	0.01	0.2	0.0904	0.0377	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0.01	0.2	0.1281	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TN	13	1	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.098	0.0075	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1806_BREAST	1	1	0.1055	FALSE	369	2501	205	193	0	FALSE	ACH-000624
HCC1806_BREAST	TRIM28--MTND2P28	12	5	TRIM28	6714	chr19:59061409:+	MTND2P28	10414	chr1:565039:+	INCL_NON_REF_SPLICE	YES	1652	0	0.01	1	0.0904	0.0377	TRIM28->chr19:59055458-59062089:+,tripartite_motif_containing_28,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HCC1806_BREAST	0.01	1	0.1281	TRUE	0	0	0	2	0	FALSE	ACH-000624
HCC1806_BREAST	HS6ST2--GPC3	12	4	HS6ST2	4211	chrX:132090836:-	GPC3	21478	chrX:132834056:-	ONLY_REF_SPLICE	YES	18	0	0.47	1	0.0904	0.0301	{Klijn_CCL:Lung=1},HS6ST2->chrX:131760044-132095423:-,heparan_sulfate_6-O-sulfotransferase_2,GPC3->Oncogene{Bushman},chrX:132669773-133119922:-,glypican_3	HCC1806_BREAST	0.47	1	0.1205	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	4	36	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	8	3	0.83	0.93	0.0301	0.2713	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.83	0.93	0.3014	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	11	7	MT-CO3	1003	chrM:9209:+	MT-ATP6	5331	chrM:9073:+	INCL_NON_REF_SPLICE	YES	0	17	1	0.51	0.0829	0.0527	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.51	1	0.1356	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	CD151--DRD4	8	18	CD151	4600	chr11:836442:+	DRD4	12663	chr11:639433:+	ONLY_REF_SPLICE	YES	571	2	0.04	0.93	0.0603	0.1356	CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+,DRD4->chr11:637293-640706:+,dopamine_receptor_D4	HCC1806_BREAST	0.04	0.93	0.1959	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	3	37	MT-CO3	1149	chrM:9355:+	MT-ATP6	5426	chrM:9168:+	INCL_NON_REF_SPLICE	YES	30	3	0.57	0.93	0.0226	0.2788	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.57	0.93	0.3014	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-ND6--MT-TE	8	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	26	0	0.49	1	0.0603	0.1281	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1806_BREAST	0.49	1	0.1884	FALSE	499	1288	110	792	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TY	12	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0904	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.0904	FALSE	13	214	14	42	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TC--MT-TY	4	32	MT-TC	1063	chrM:5764:-	MT-TY	4094	chrM:5864:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0.2411	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.2712	FALSE	51	280	19	36	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TC--MT-TY	12	0	MT-TC	1009	chrM:5818:-	MT-TY	4068	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0904	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.0904	FALSE	51	280	19	36	0	FALSE	ACH-000624
HCC1806_BREAST	REEP5--MCC	11	4	REEP5	6053	chr5:112222712:-	MCC	42694	chr5:112379327:-	ONLY_REF_SPLICE	YES	181	42	0.08	0.26	0.0829	0.0301	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:-:[99560],REEP5->chr5:112212084-112258236:-,receptor_accessory_protein_5,MCC->Oncogene{Bushman},chr5:112357796-112824527:-,mutated_in_colorectal_cancers	HCC1806_BREAST	0.08	0.26	0.113	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	ASAP2--RP11-734K21.2	11	3	ASAP2	1466	chr2:9347359:+	RP11-734K21.2	35785	chr2:9244536:+	INCL_NON_REF_SPLICE	YES	3	0	0.82	1	0.0829	0.0226	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,RP11-734K21.2->chr2:9243569-9245243:+	HCC1806_BREAST	0.82	1	0.1055	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	6	23	MT-CO1	1309	chrM:6212:+	MT-ND2	5972	chrM:4899:+	INCL_NON_REF_SPLICE	YES	2385	10062	0.01	0	0.0452	0.1733	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.01	0.2185	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	4	31	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	10	3	0.78	0.92	0.0301	0.2336	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.78	0.92	0.2637	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	CTD-2008L17.1--RP11-456O19.2	11	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.0829	0.0151	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HCC1806_BREAST	0.81	1	0.098	FALSE	33	240	4	98	0	FALSE	ACH-000624
HCC1806_BREAST	LPP--RTP1	10	6	LPP	31337	chr3:188478070:+	RTP1	54064	chr3:186915378:+	INCL_NON_REF_SPLICE	YES	17	0	0.48	1	0.0753	0.0452	LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,RTP1->chr3:186915274-186919253:+,receptor_(chemosensory)_transporter_protein_1	HCC1806_BREAST	0.48	1	0.1205	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	SIRT3--AC016629.3	11	2	SIRT3	10641	chr11:218832:-	AC016629.3	17213	chr19:59109183:-	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.0829	0.0151	SIRT3->chr11:215458-236931:-,sirtuin_3,AC016629.3->chr19:59105263-59110722:-	HCC1806_BREAST	0.81	1	0.098	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	8	13	MT-CO1	2223	chrM:7126:+	MT-ND2	6422	chrM:5349:+	INCL_NON_REF_SPLICE	YES	24001	50	0	0.3	0.0603	0.098	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.3	0.1583	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TN	11	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0829	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1806_BREAST	1	1	0.0829	FALSE	369	2501	205	193	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TC--MT-TY	11	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0829	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.0829	FALSE	51	280	19	36	0	FALSE	ACH-000624
HCC1806_BREAST	RP11-307P5.1--SASH1	10	4	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	2	3	0.88	0.82	0.0753	0.0301	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HCC1806_BREAST	0.82	0.88	0.1054	TRUE	0	2	0	37	2	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	5	23	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	22	1	0.56	0.97	0.0377	0.1733	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.56	0.97	0.211	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-ND6--MT-TE	10	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0753	0.0226	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1806_BREAST	0.93	1	0.0979	FALSE	499	1288	110	792	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TY	10	2	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0753	0.0151	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.0904	FALSE	13	214	14	42	0	FALSE	ACH-000624
HCC1806_BREAST	PRRT3-AS1--ARPC4-TTLL3	6	18	PRRT3-AS1	2066	chr3:9990153:+	ARPC4-TTLL3	12885	chr3:9854630:+	INCL_NON_REF_SPLICE	YES	4	17	0.86	0.59	0.0452	0.1356	PRRT3-AS1->PRRT3_antisense_RNA_1,chr3:9989088-9996471:+,ARPC4-TTLL3->ARPC4-TTLL3_readthrough,chr3:9834766-9877085:+	HCC1806_BREAST	0.59	0.86	0.1808	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	CD22--HPN	10	1	CD22	1172	chr19:35810335:+	HPN	23670	chr19:35550577:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0753	0.0075	CD22->CD22_molecule,chr19:35810164-35838258:+,HPN->chr19:35531410-35557475:+,hepsin	HCC1806_BREAST	1	1	0.0828	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TY	10	1	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0753	0.0075	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.0828	FALSE	13	214	14	42	0	FALSE	ACH-000624
HCC1806_BREAST	RP11-96H19.1--RP11-446N19.1	9	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.0678	0.0377	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1806_BREAST	0.93	1	0.1055	FALSE	515	4851	409	746	0	FALSE	ACH-000624
HCC1806_BREAST	ZNF224--SIGLEC16	10	1	ZNF224	5698	chr19:44605378:+	SIGLEC16	12905	chr19:50473069:+	ONLY_REF_SPLICE	YES	15	0	0.42	1	0.0753	0.0075	ZNF224->chr19:44598492-44612479:+,zinc_finger_protein_224,SIGLEC16->chr19:50472857-50479071:+,sialic_acid_binding_Ig_like_lectin_16_(gene/pseudogene)	HCC1806_BREAST	0.42	1	0.0828	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	ZC3H7B--ERBB3	8	7	ZC3H7B	1251	chr22:41697776:+	ERBB3	32631	chr12:56477535:+	ONLY_REF_SPLICE	YES	43	44	0.26	0.25	0.0603	0.0527	ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,ERBB3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:56473641-56497289:+,erb-b2_receptor_tyrosine_kinase_3	HCC1806_BREAST	0.25	0.26	0.113	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	9	2	MT-CO1	1327	chrM:6230:+	MT-ND2	6422	chrM:5349:+	INCL_NON_REF_SPLICE	YES	2792	50	0	0.18	0.0678	0.0151	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.18	0.0829	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	3	25	MT-CO1	1443	chrM:6346:+	MT-ND2	6400	chrM:5327:+	INCL_NON_REF_SPLICE	YES	7472	98	0	0.22	0.0226	0.1884	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.22	0.211	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-ND6--MT-TE	3	25	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	27	0	0.51	1	0.0226	0.1884	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1806_BREAST	0.51	1	0.211	FALSE	499	1288	110	792	0	FALSE	ACH-000624
HCC1806_BREAST	CHEK2--TTC28	8	4	CHEK2	15530	chr22:29105994:-	TTC28	34597	chr22:28559587:-	ONLY_REF_SPLICE	YES	25	0	0.32	1	0.0603	0.0301	NEIGHBORS[7878],CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28	HCC1806_BREAST	0.32	1	0.0904	FALSE	0	0	0	1	0	FALSE	ACH-000624
HCC1806_BREAST	MIR205HG--DNAJC27-AS1	9	0	MIR205HG	1351	chr1:209602515:+	DNAJC27-AS1	13914	chr2:25251407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0678	0	HGNC_GENEFAM,MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,DNAJC27-AS1->DNAJC27_antisense_RNA_1,chr2:25194259-25262563:+	HCC1806_BREAST	1	1	0.0678	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	NRIP1--AF127936.7	8	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0603	0.0301	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1806_BREAST	0.92	1	0.0904	FALSE	292	1546	117	613	0	FALSE	ACH-000624
HCC1806_BREAST	WNK1--USP31	9	0	WNK1	12527	chr12:971436:+	USP31	49960	chr16:23102125:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0678	0	WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,USP31->chr16:23072727-23160591:-,ubiquitin_specific_peptidase_31	HCC1806_BREAST	1	1	0.0678	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	FAM222B--SEZ6	2	27	FAM222B	6927	chr17:27104066:-	SEZ6	21946	chr17:27296970:-	ONLY_REF_SPLICE	YES	11	0	0.72	1	0.0151	0.2034	LOCAL_REARRANGEMENT:-:[99669],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,SEZ6->chr17:27281919-27333458:-,seizure_related_6_homolog	HCC1806_BREAST	0.72	1	0.2185	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	8	3	MT-CO1	1467	chrM:6370:+	MT-ND2	6442	chrM:5369:+	INCL_NON_REF_SPLICE	NO	9413	36	0	0.23	0.0603	0.0226	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.23	0.0829	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	SMURF2--CEP112	8	2	SMURF2	1240	chr17:62657947:-	CEP112	68147	chr17:63637183:-	ONLY_REF_SPLICE	YES	1	49	0.91	0.17	0.0603	0.0151	SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	HCC1806_BREAST	0.17	0.91	0.0754	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	ZNF649--SIPA1L3	8	2	ZNF649	5153	chr19:52399725:-	SIPA1L3	30445	chr19:38631824:+	ONLY_REF_SPLICE	YES	7	13	0.59	0.43	0.0603	0.0151	GTEx&tcga_normals:1/3694=0.03%,ZNF649->chr19:52392477-52408293:-,zinc_finger_protein_649,SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3	HCC1806_BREAST	0.43	0.59	0.0754	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO2--MT-ND2	5	13	MT-CO2	1678	chrM:8263:+	MT-ND2	5041	chrM:4826:+	INCL_NON_REF_SPLICE	NO	0	15098	1	0	0.0377	0.098	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	1	0.1357	FALSE	105	46	5	21	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	7	4	MT-CO1	1588	chrM:6491:+	MT-ND2	6422	chrM:5349:+	INCL_NON_REF_SPLICE	YES	19434	50	0	0.18	0.0527	0.0301	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.18	0.0828	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO2--MT-ND2	8	0	MT-CO2	1320	chrM:7905:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0603	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	1	1	0.0603	FALSE	105	46	5	21	0	FALSE	ACH-000624
HCC1806_BREAST	ASAP2--RP11-734K21.2	7	3	ASAP2	1466	chr2:9347359:+	RP11-734K21.2	35814	chr2:9244565:+	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0527	0.0226	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,RP11-734K21.2->chr2:9243569-9245243:+	HCC1806_BREAST	0.77	1	0.0753	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	CCDC57--CSNK1D	7	3	CCDC57	12407	chr17:80136903:-	CSNK1D	59295	chr17:80201123:-	INCL_NON_REF_SPLICE	YES	44	94	0.19	0.1	0.0527	0.0226	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_REARRANGEMENT:-:[26193],CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	HCC1806_BREAST	0.1	0.19	0.0753	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	3	19	MT-CO1	1588	chrM:6491:+	MT-ND2	6410	chrM:5337:+	INCL_NON_REF_SPLICE	YES	19434	66	0	0.25	0.0226	0.1432	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.25	0.1658	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	3	17	MT-CO3	1132	chrM:9338:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	22	2	0.48	0.91	0.0226	0.1281	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.48	0.91	0.1507	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-ND6--MT-TE	3	17	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	25	0	0.44	1	0.0226	0.1281	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1806_BREAST	0.44	1	0.1507	FALSE	499	1288	110	792	0	FALSE	ACH-000624
HCC1806_BREAST	CTD-3116E22.6--ZNF274	7	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	HCC1806_BREAST	1	1	0.0527	TRUE	0	0	0	13	0	TRUE	ACH-000624
HCC1806_BREAST	GALNT18--SBF2	7	0	GALNT18	6283	chr11:11454168:-	SBF2	36391	chr11:9985429:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0527	0	GALNT18->chr11:11292423-11643552:-,polypeptide_N-acetylgalactosaminyltransferase_18,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	HCC1806_BREAST	1	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-TC--MT-TY	7	0	MT-TC	1075	chrM:5752:-	MT-TY	4124	chrM:5834:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.0527	FALSE	51	280	19	36	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TC--MT-TY	7	0	MT-TC	1056	chrM:5771:-	MT-TY	4108	chrM:5850:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.0527	FALSE	51	280	19	36	0	FALSE	ACH-000624
HCC1806_BREAST	NRIP1--AF127936.7	5	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	25	0	0.34	1	0.0377	0.0603	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1806_BREAST	0.34	1	0.098	FALSE	164	806	69	479	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	4	11	MT-CO3	1138	chrM:9344:+	MT-ATP6	5454	chrM:9196:+	INCL_NON_REF_SPLICE	NO	22	2	0.41	0.88	0.0301	0.0829	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.41	0.88	0.113	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	3	15	MT-CO3	1007	chrM:9213:+	MT-ATP6	4918	chrM:8660:+	INCL_NON_REF_SPLICE	YES	0	97	1	0.16	0.0226	0.113	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.16	1	0.1356	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	6	2	MT-CO1	1316	chrM:6219:+	MT-ND2	6442	chrM:5369:+	INCL_NON_REF_SPLICE	NO	2429	36	0	0.18	0.0452	0.0151	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.18	0.0603	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	6	2	MT-CO3	1158	chrM:9364:+	MT-ATP6	5461	chrM:9203:+	INCL_NON_REF_SPLICE	YES	34	0	0.19	1	0.0452	0.0151	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.19	1	0.0603	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	6	2	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	33	0	0.2	1	0.0452	0.0151	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.2	1	0.0603	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TY	6	2	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0.0151	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.0603	FALSE	13	214	14	42	0	FALSE	ACH-000624
HCC1806_BREAST	CD151--DRD4	1	21	CD151	5001	chr11:836843:+	DRD4	12878	chr11:639648:+	ONLY_REF_SPLICE	NO	536	3	0.04	0.88	0.0075	0.1582	CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+,DRD4->chr11:637293-640706:+,dopamine_receptor_D4	HCC1806_BREAST	0.04	0.88	0.1657	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	CDC42BPB--LINC00605	6	1	CDC42BPB	26920	chr14:103416102:-	LINC00605	41544	chr14:103654607:-	ONLY_REF_SPLICE	YES	55	1	0.11	0.88	0.0452	0.0075	CDC42BPB->CDC42_binding_protein_kinase_beta,chr14:103398716-103523799:-,LINC00605->chr14:103653558-103655365:-,long_intergenic_non-protein_coding_RNA_605	HCC1806_BREAST	0.11	0.88	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TC	3	13	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0.098	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1806_BREAST	1	1	0.1206	FALSE	462	80	0	856	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TC--MT-TY	3	13	MT-TC	1065	chrM:5762:-	MT-TY	4101	chrM:5857:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0226	0.098	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.1206	FALSE	51	280	19	36	0	FALSE	ACH-000624
HCC1806_BREAST	MTND4P12--MTATP6P1	5	5	MTND4P12	1756	chr5:134262971:-	MTATP6P1	5665	chr1:569363:+	INCL_NON_REF_SPLICE	YES	6	7356	0.62	0	0.0377	0.0377	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HCC1806_BREAST	0	0.62	0.0754	FALSE	27	31	5	8	0	FALSE	ACH-000624
HCC1806_BREAST	C11orf49--CKAP5	6	0	C11orf49	1163	chr11:46958402:+	CKAP5	31718	chr11:46832728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0452	0	LOCAL_INVERSION:+:-:[90393],C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49,CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5	HCC1806_BREAST	1	1	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	5	4	MT-CO1	1548	chrM:6451:+	MT-ND2	6422	chrM:5349:+	INCL_NON_REF_SPLICE	YES	16037	50	0	0.15	0.0377	0.0301	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.15	0.0678	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO2--MT-ND2	6	0	MT-CO2	1275	chrM:7860:+	MT-ND2	5540	chrM:5325:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	1	1	0.0452	FALSE	105	46	5	21	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO2--MT-ND2	3	11	MT-CO2	1299	chrM:7884:+	MT-ND2	4695	chrM:4480:+	INCL_NON_REF_SPLICE	YES	19144	0	0	1	0.0226	0.0829	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	1	0.1055	FALSE	105	46	5	21	0	FALSE	ACH-000624
HCC1806_BREAST	MT-ND6--MT-TE	3	11	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0226	0.0829	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1806_BREAST	0.93	1	0.1055	FALSE	499	1288	110	792	0	FALSE	ACH-000624
HCC1806_BREAST	MTND4P12--MTATP6P1	3	11	MTND4P12	1902	chr5:134262825:-	MTATP6P1	5485	chr1:569183:+	INCL_NON_REF_SPLICE	YES	65	528	0.18	0.03	0.0226	0.0829	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HCC1806_BREAST	0.03	0.18	0.1055	TRUE	27	31	5	8	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO2--MT-ND2	5	2	MT-CO2	1271	chrM:7856:+	MT-ND2	5360	chrM:5145:+	INCL_NON_REF_SPLICE	YES	18752	1618	0	0	0.0377	0.0151	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0	0.0528	FALSE	105	46	5	21	0	FALSE	ACH-000624
HCC1806_BREAST	MT-ND6--MT-TE	4	6	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0301	0.0452	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1806_BREAST	0.83	1	0.0753	FALSE	499	1288	110	792	0	FALSE	ACH-000624
HCC1806_BREAST	MTND4P12--MTATP6P1	3	10	MTND4P12	1946	chr5:134262781:-	MTATP6P1	5623	chr1:569321:+	INCL_NON_REF_SPLICE	YES	63	8486	0.17	0	0.0226	0.0753	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HCC1806_BREAST	0	0.17	0.0979	FALSE	27	31	5	8	0	FALSE	ACH-000624
HCC1806_BREAST	MTND4P12--MTATP6P1	5	2	MTND4P12	1299	chr5:134263428:-	MTATP6P1	5536	chr1:569234:+	INCL_NON_REF_SPLICE	YES	49	5006	0.12	0	0.0377	0.0151	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HCC1806_BREAST	0	0.12	0.0528	FALSE	27	31	5	8	0	FALSE	ACH-000624
HCC1806_BREAST	SIRT3--AC016629.3	5	2	SIRT3	11744	chr11:216670:-	AC016629.3	17213	chr19:59109183:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.0151	SIRT3->chr11:215458-236931:-,sirtuin_3,AC016629.3->chr19:59105263-59110722:-	HCC1806_BREAST	1	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	FBLN1--MTND2P28	5	1	FBLN1	25922	chr22:45970499:+	MTND2P28	33117	chr1:565050:+	INCL_NON_REF_SPLICE	YES	183	0	0.03	1	0.0377	0.0075	FBLN1->Oncogene{Bushman},chr22:45898118-45997015:+,fibulin_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HCC1806_BREAST	0.03	1	0.0452	TRUE	0	0	0	2	0	FALSE	ACH-000624
HCC1806_BREAST	LDLRAD3--TCP11L1	5	1	LDLRAD3	1164	chr11:35965694:+	TCP11L1	23499	chr11:33078661:+	ONLY_REF_SPLICE	YES	1	6	0.86	0.5	0.0377	0.0075	LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,TCP11L1->chr11:33060963-33127489:+,t-complex_11_like_1	HCC1806_BREAST	0.5	0.86	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MAG--HPN	5	1	MAG	11194	chr19:35804332:+	HPN	20192	chr19:35550577:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.0075	MAG->chr19:35783028-35804707:+,myelin_associated_glycoprotein,HPN->chr19:35531410-35557475:+,hepsin	HCC1806_BREAST	1	1	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	RP11-603B24.1--HERC2P3	3	9	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	30131	chr15:20613982:-	INCL_NON_REF_SPLICE	YES	0	30	1	0.29	0.0226	0.0678	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	HCC1806_BREAST	0.29	1	0.0904	TRUE	3	0	0	2	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	4	4	MT-CO1	1565	chrM:6468:+	MT-ND2	6444	chrM:5371:+	INCL_NON_REF_SPLICE	YES	17089	36	0	0.18	0.0301	0.0301	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.18	0.0602	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO2--MT-ND2	3	8	MT-CO2	1231	chrM:7816:+	MT-ND2	4715	chrM:4500:+	INCL_NON_REF_SPLICE	YES	17150	0	0	1	0.0226	0.0603	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	1	0.0829	FALSE	105	46	5	21	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TN	5	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1806_BREAST	1	1	0.0377	FALSE	369	2501	205	193	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TC--MT-TY	5	0	MT-TC	1115	chrM:5712:-	MT-TY	4115	chrM:5843:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.0377	FALSE	51	280	19	36	0	FALSE	ACH-000624
HCC1806_BREAST	TPX2--COX4I2	4	4	TPX2	2458	chr20:30330450:+	COX4I2	26822	chr20:30227736:+	ONLY_REF_SPLICE	YES	357	5	0.02	0.62	0.0301	0.0301	LOCAL_REARRANGEMENT:+:[94265],TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,COX4I2->chr20:30225691-30232809:+,cytochrome_c_oxidase_subunit_4I2	HCC1806_BREAST	0.02	0.62	0.0602	TRUE	0	1	0	1	0	FALSE	ACH-000624
HCC1806_BREAST	ZNF606--DENND5A	4	4	ZNF606	11070	chr19:58490022:-	DENND5A	22036	chr11:9202631:-	INCL_NON_REF_SPLICE	YES	7	26	0.53	0.24	0.0301	0.0301	ZNF606->chr19:58488421-58514717:-,zinc_finger_protein_606,DENND5A->DENN_domain_containing_5A,chr11:9160372-9286937:-	HCC1806_BREAST	0.24	0.53	0.0602	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	KRT5--HNRNPA1P48	4	3	KRT5	6558	chr12:52908914:-	HNRNPA1P48	11083	chr16:51680636:+	INCL_NON_REF_SPLICE	NO	148	164	0.05	0.04	0.0301	0.0226	KRT5->chr12:52908359-52914471:-,keratin_5,HNRNPA1P48->chr16:51679667-51681043:+,heterogeneous_nuclear_ribonucleoprotein_A1_pseudogene_48	HCC1806_BREAST	0.04	0.05	0.0527	TRUE	0	0	0	1	0	FALSE	ACH-000624
HCC1806_BREAST	MTND4P12--MTATP6P1	3	7	MTND4P12	1693	chr5:134263034:-	MTATP6P1	5432	chr1:569130:+	INCL_NON_REF_SPLICE	YES	5	0	0.67	1	0.0226	0.0527	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HCC1806_BREAST	0.67	1	0.0753	TRUE	27	31	5	8	0	FALSE	ACH-000624
HCC1806_BREAST	RP11-114H23.1--RP11-114H23.2	4	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0.0226	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC1806_BREAST	1	1	0.0527	FALSE	81	155	12	160	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	4	2	MT-CO3	1032	chrM:9238:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	YES	1	3	0.86	0.67	0.0301	0.0151	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.67	0.86	0.0452	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	4	2	MT-CO3	1083	chrM:9289:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	3	2	0.67	0.75	0.0301	0.0151	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.67	0.75	0.0452	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MTND4P12--MTATP6P1	4	2	MTND4P12	1303	chr5:134263424:-	MTATP6P1	5476	chr1:569174:+	INCL_NON_REF_SPLICE	YES	52	118	0.1	0.05	0.0301	0.0151	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HCC1806_BREAST	0.05	0.1	0.0452	TRUE	27	31	5	8	0	FALSE	ACH-000624
HCC1806_BREAST	MTND4P12--MTATP6P1	4	2	MTND4P12	1977	chr5:134262750:-	MTATP6P1	5960	chr1:569658:+	INCL_NON_REF_SPLICE	YES	18	1081	0.25	0.01	0.0301	0.0151	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HCC1806_BREAST	0.01	0.25	0.0452	FALSE	27	31	5	8	0	FALSE	ACH-000624
HCC1806_BREAST	TRIM44--PCMTD1	4	2	TRIM44	3054	chr11:35706884:+	PCMTD1	28256	chr8:52730486:-	INCL_NON_REF_SPLICE	YES	248	30	0.02	0.17	0.0301	0.0151	TRIM44->chr11:35684353-35829775:+,tripartite_motif_containing_44,PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1	HCC1806_BREAST	0.02	0.17	0.0452	TRUE	0	0	0	1	0	FALSE	ACH-000624
HCC1806_BREAST	CD151--DRD4	3	5	CD151	4311	chr11:836153:+	DRD4	13631	chr11:640401:+	ONLY_REF_SPLICE	YES	610	6	0.01	0.57	0.0226	0.0377	CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+,DRD4->chr11:637293-640706:+,dopamine_receptor_D4	HCC1806_BREAST	0.01	0.57	0.0603	FALSE	0	0	0	1	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO2--MT-ND2	4	1	MT-CO2	1279	chrM:7864:+	MT-ND2	5517	chrM:5302:+	INCL_NON_REF_SPLICE	YES	18926	922	0	0.01	0.0301	0.0075	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.01	0.0376	FALSE	105	46	5	21	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO3--MT-ATP6	3	5	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	39	2	0.17	0.8	0.0226	0.0377	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1806_BREAST	0.17	0.8	0.0603	FALSE	189	492	56	216	0	FALSE	ACH-000624
HCC1806_BREAST	MTND4P12--MTATP6P1	4	1	MTND4P12	1452	chr5:134263275:-	MTATP6P1	5778	chr1:569476:+	INCL_NON_REF_SPLICE	YES	22	5443	0.19	0	0.0301	0.0075	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HCC1806_BREAST	0	0.19	0.0376	FALSE	27	31	5	8	0	FALSE	ACH-000624
HCC1806_BREAST	RP11-141M1.3--STARD13	4	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	5	44	0.5	0.1	0.0301	0.0075	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HCC1806_BREAST	0.1	0.5	0.0376	FALSE	141	264	50	91	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO2--MT-ND2	4	0	MT-CO2	1320	chrM:7905:+	MT-ND2	5552	chrM:5337:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	1	1	0.0301	FALSE	105	46	5	21	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO2--MT-ND2	4	0	MT-CO2	1204	chrM:7789:+	MT-ND2	5519	chrM:5304:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	1	1	0.0301	FALSE	105	46	5	21	0	FALSE	ACH-000624
HCC1806_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1806_BREAST	1	1	0.0301	FALSE	499	1288	110	792	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TC--MT-TY	4	0	MT-TC	1059	chrM:5768:-	MT-TY	4111	chrM:5847:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.0301	FALSE	51	280	19	36	0	FALSE	ACH-000624
HCC1806_BREAST	RP11-344E13.3--UBBP4	3	4	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	270	7	0.03	0.5	0.0226	0.0301	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	HCC1806_BREAST	0.03	0.5	0.0527	TRUE	23	13	0	54	0	FALSE	ACH-000624
HCC1806_BREAST	VAMP8--DNAH6	4	0	VAMP8	1083	chr2:85788767:+	DNAH6	28938	chr2:84831463:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	VAMP8->Oncogene{Bushman},chr2:85788685-85809154:+,vesicle_associated_membrane_protein_8,DNAH6->chr2:84743579-85046713:+,dynein_axonemal_heavy_chain_6	HCC1806_BREAST	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO1--MT-ND2	3	2	MT-CO1	1320	chrM:6223:+	MT-ND2	6426	chrM:5353:+	INCL_NON_REF_SPLICE	YES	2544	46	0	0.1	0.0226	0.0151	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	0	0.1	0.0377	FALSE	55	19	1	13	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TY	3	2	MT-TA	1070	chrM:5586:-	MT-TY	4098	chrM:5863:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0.0151	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.0377	FALSE	13	214	14	42	0	FALSE	ACH-000624
HCC1806_BREAST	MTND4P12--MTATP6P1	3	2	MTND4P12	1209	chr5:134263518:-	MTATP6P1	5498	chr1:569196:+	INCL_NON_REF_SPLICE	NO	133	887	0.04	0.01	0.0226	0.0151	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HCC1806_BREAST	0.01	0.04	0.0377	FALSE	27	31	5	8	0	FALSE	ACH-000624
HCC1806_BREAST	MTND4P12--MTATP6P1	3	2	MTND4P12	1211	chr5:134263516:-	MTATP6P1	5634	chr1:569332:+	INCL_NON_REF_SPLICE	NO	129	8626	0.04	0	0.0226	0.0151	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HCC1806_BREAST	0	0.04	0.0377	FALSE	27	31	5	8	0	FALSE	ACH-000624
HCC1806_BREAST	MTND4P12--MTATP6P1	3	2	MTND4P12	1184	chr5:134263543:-	MTATP6P1	5658	chr1:569356:+	INCL_NON_REF_SPLICE	NO	201	7892	0.02	0	0.0226	0.0151	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HCC1806_BREAST	0	0.02	0.0377	FALSE	27	31	5	8	0	FALSE	ACH-000624
HCC1806_BREAST	MTND4P12--MTATP6P1	3	2	MTND4P12	1209	chr5:134263518:-	MTATP6P1	5316	chr1:569014:+	INCL_NON_REF_SPLICE	NO	133	0	0.04	1	0.0226	0.0151	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HCC1806_BREAST	0.04	1	0.0377	TRUE	27	31	5	8	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TY	3	1	MT-TA	1044	chrM:5612:-	MT-TY	4079	chrM:5882:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0.0075	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.0301	FALSE	13	214	14	42	0	FALSE	ACH-000624
HCC1806_BREAST	NRIP1--AF127936.7	2	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.33	1	0.0151	0.0377	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1806_BREAST	0.33	1	0.0528	FALSE	125	705	46	456	0	FALSE	ACH-000624
HCC1806_BREAST	RIF1--PKD1L1	3	1	RIF1	19769	chr2:152303089:+	PKD1L1	87188	chr7:47898483:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0226	0.0075	RIF1->chr2:152266397-152364527:+,replication_timing_regulatory_factor_1,PKD1L1->chr7:47814250-47988088:-,polycystin_1_like_1,_transient_receptor_potential_channel_interacting	HCC1806_BREAST	0.44	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	RP11-476K15.1--CTD-2015H3.2	3	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	6	0	0.4	1	0.0226	0.0075	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HCC1806_BREAST	0.4	1	0.0301	FALSE	0	46	0	73	0	FALSE	ACH-000624
HCC1806_BREAST	MAG--HPN	3	0	MAG	9782	chr19:35802920:+	HPN	20192	chr19:35550577:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MAG->chr19:35783028-35804707:+,myelin_associated_glycoprotein,HPN->chr19:35531410-35557475:+,hepsin	HCC1806_BREAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MT-CO2--MT-ND2	3	0	MT-CO2	1368	chrM:7953:+	MT-ND2	5598	chrM:5383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	1	1	0.0226	FALSE	105	46	5	21	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO2--MT-ND2	3	0	MT-CO2	1301	chrM:7886:+	MT-ND2	5531	chrM:5316:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	1	1	0.0226	FALSE	105	46	5	21	0	FALSE	ACH-000624
HCC1806_BREAST	MT-CO2--MT-ND2	3	0	MT-CO2	1240	chrM:7825:+	MT-ND2	5552	chrM:5337:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1806_BREAST	1	1	0.0226	FALSE	105	46	5	21	0	FALSE	ACH-000624
HCC1806_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1806_BREAST	1	1	0.0226	FALSE	499	1288	110	792	0	FALSE	ACH-000624
HCC1806_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1027	chrM:14647:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1806_BREAST	1	1	0.0226	FALSE	499	1288	110	792	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TN	3	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1806_BREAST	1	1	0.0226	FALSE	369	2501	205	193	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TA--MT-TY	3	0	MT-TA	1021	chrM:5635:-	MT-TY	4077	chrM:5884:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.0226	FALSE	13	214	14	42	0	FALSE	ACH-000624
HCC1806_BREAST	MT-TC--MT-TY	3	0	MT-TC	1054	chrM:5773:-	MT-TY	4131	chrM:5827:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1806_BREAST	1	1	0.0226	FALSE	51	280	19	36	0	FALSE	ACH-000624
HCC1806_BREAST	MTDH--KB-1043D8.6	3	0	MTDH	2811	chr8:98673401:+	KB-1043D8.6	22653	chr8:97250135:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MTDH->chr8:98656407-98740998:+,metadherin,KB-1043D8.6->chr8:97247655-97250262:+	HCC1806_BREAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	MTND4P12--MTATP6P1	3	0	MTND4P12	1077	chr5:134263650:-	MTATP6P1	5956	chr1:569654:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HCC1806_BREAST	1	1	0.0226	TRUE	27	30	5	8	0	FALSE	ACH-000624
HCC1806_BREAST	C22orf39--ARVCF	2	2	C22orf39	23460	chr22:19348760:-	ARVCF	33494	chr22:19998031:-	ONLY_REF_SPLICE	YES	32	0	0.11	1	0.0151	0.0151	C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,ARVCF->armadillo_repeat_gene_deleted_in_velocardiofacial_syndrome,chr22:19957419-20004331:-	HCC1806_BREAST	0.11	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	LDLRAD3--TCP11L1	2	2	LDLRAD3	3412	chr11:36057799:+	TCP11L1	24303	chr11:33079465:+	ONLY_REF_SPLICE	YES	21	5	0.16	0.44	0.0151	0.0151	LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,TCP11L1->chr11:33060963-33127489:+,t-complex_11_like_1	HCC1806_BREAST	0.16	0.44	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	HS6ST2--GPC3	2	1	HS6ST2	4211	chrX:132090836:-	GPC3	24859	chrX:132730627:-	ONLY_REF_SPLICE	YES	18	5	0.14	0.38	0.0151	0.0075	{Klijn_CCL:Lung=1},HS6ST2->chrX:131760044-132095423:-,heparan_sulfate_6-O-sulfotransferase_2,GPC3->Oncogene{Bushman},chrX:132669773-133119922:-,glypican_3	HCC1806_BREAST	0.14	0.38	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	HS6ST2--GPC3	2	1	HS6ST2	4211	chrX:132090836:-	GPC3	23738	chrX:132795878:-	ONLY_REF_SPLICE	YES	18	0	0.14	1	0.0151	0.0075	{Klijn_CCL:Lung=1},HS6ST2->chrX:131760044-132095423:-,heparan_sulfate_6-O-sulfotransferase_2,GPC3->Oncogene{Bushman},chrX:132669773-133119922:-,glypican_3	HCC1806_BREAST	0.14	1	0.0226	TRUE	0	1	0	2	0	TRUE	ACH-000624
HCC1806_BREAST	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0075	0.0377	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1806_BREAST	1	1	0.0452	FALSE	192	492	57	212	0	FALSE	ACH-000624
HCC1806_BREAST	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0075	0.0377	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1806_BREAST	0.86	1	0.0452	FALSE	467	2173	244	435	0	FALSE	ACH-000624
HCC1806_BREAST	TPX2--COX4I2	1	5	TPX2	2458	chr20:30330450:+	COX4I2	25907	chr20:30226821:+	ONLY_REF_SPLICE	YES	357	0	0.02	1	0.0075	0.0377	LOCAL_REARRANGEMENT:+:[94265],TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,COX4I2->chr20:30225691-30232809:+,cytochrome_c_oxidase_subunit_4I2	HCC1806_BREAST	0.02	1	0.0452	TRUE	0	1	0	1	0	FALSE	ACH-000624
HCC1806_BREAST	FRMD6--HNRNPC	2	0	FRMD6	11179	chr14:52118714:+	HNRNPC	47511	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	HCC1806_BREAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	RP11-114H23.1--RP11-114H23.2	1	3	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0075	0.0226	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC1806_BREAST	1	1	0.0301	FALSE	5	9	0	20	0	FALSE	ACH-000624
HCC1806_BREAST	RP11-141M1.3--STARD13	1	3	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	44	0.67	0.08	0.0075	0.0226	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HCC1806_BREAST	0.08	0.67	0.0301	FALSE	49	120	16	70	0	FALSE	ACH-000624
HCC1806_BREAST	RP11-603B24.1--HERC2P3	1	3	RP11-603B24.1	1304	chr15:22567225:+	HERC2P3	31465	chr15:20588709:-	ONLY_REF_SPLICE	NO	2	24	0.67	0.14	0.0075	0.0226	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	HCC1806_BREAST	0.14	0.67	0.0301	TRUE	5	1	0	3	0	FALSE	ACH-000624
HCC1806_BREAST	ARHGEF10L--PADI6	1	1	ARHGEF10L	30160	chr1:17983203:+	PADI6	43930	chr1:17706415:+	ONLY_REF_SPLICE	YES	29	0	0.06	1	0.0075	0.0075	ARHGEF10L->Rho_guanine_nucleotide_exchange_factor_10_like,chr1:17866330-18024369:+,PADI6->chr1:17698691-17728195:+,peptidyl_arginine_deiminase_6	HCC1806_BREAST	0.06	1	0.015	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	C22orf39--ARVCF	1	1	C22orf39	24609	chr22:19346859:-	ARVCF	38397	chr22:19969614:-	ONLY_REF_SPLICE	NO	27	13	0.07	0.13	0.0075	0.0075	C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,ARVCF->armadillo_repeat_gene_deleted_in_velocardiofacial_syndrome,chr22:19957419-20004331:-	HCC1806_BREAST	0.07	0.13	0.015	TRUE	0	0	0	1	0	FALSE	ACH-000624
HCC1806_BREAST	MEIS2--C15orf41	1	1	MEIS2	12226	chr15:37329015:-	C15orf41	52960	chr15:37100525:+	ONLY_REF_SPLICE	YES	44	28	0.04	0.07	0.0075	0.0075	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:-:+:[78957],MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,C15orf41->chr15:36871812-37102449:+,chromosome_15_open_reading_frame_41	HCC1806_BREAST	0.04	0.07	0.015	TRUE	0	1	0	4	1	FALSE	ACH-000624
HCC1806_BREAST	REEP5--MCC	1	1	REEP5	3516	chr5:112238077:-	MCC	42694	chr5:112379327:-	ONLY_REF_SPLICE	YES	213	42	0.01	0.05	0.0075	0.0075	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:-:[99560],REEP5->chr5:112212084-112258236:-,receptor_accessory_protein_5,MCC->Oncogene{Bushman},chr5:112357796-112824527:-,mutated_in_colorectal_cancers	HCC1806_BREAST	0.01	0.05	0.015	FALSE	0	0	0	1	0	FALSE	ACH-000624
HCC1806_BREAST	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	3	6	0.4	0.25	0.0075	0.0075	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC1806_BREAST	0.25	0.4	0.015	FALSE	0	23	1	67	0	FALSE	ACH-000624
HCC1806_BREAST	SELRC1--SCP2	1	1	SELRC1	2599	chr1:53158399:-	SCP2	25005	chr1:53480562:+	ONLY_REF_SPLICE	NO	18	80	0.1	0.02	0.0075	0.0075	SELRC1->chr1:53152508-53164038:-,SCP2->chr1:53392901-53517375:+,sterol_carrier_protein_2	HCC1806_BREAST	0.02	0.1	0.015	TRUE	0	0	0	1	0	FALSE	ACH-000624
HCC1806_BREAST	SRD5A1--PER3	1	1	SRD5A1	1527	chr5:6633982:+	PER3	13226	chr1:7844714:+	ONLY_REF_SPLICE	YES	42	0	0.05	1	0.0075	0.0075	SRD5A1->chr5:6633456-6669675:+,steroid_5_alpha-reductase_1,PER3->chr1:7844380-7905237:+,period_circadian_clock_3	HCC1806_BREAST	0.05	1	0.015	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	UST--SASH1	1	1	UST	1350	chr6:149068813:+	SASH1	20269	chr6:148711270:+	ONLY_REF_SPLICE	YES	6	3	0.25	0.4	0.0075	0.0075	UST->chr6:149068464-149398126:+,uronyl_2-sulfotransferase,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HCC1806_BREAST	0.25	0.4	0.015	TRUE	0	0	0	1	0	TRUE	ACH-000624
HCC1806_BREAST	ZNF606--DENND5A	1	1	ZNF606	8444	chr19:58499575:-	DENND5A	22036	chr11:9202631:-	ONLY_REF_SPLICE	NO	28	26	0.07	0.07	0.0075	0.0075	ZNF606->chr19:58488421-58514717:-,zinc_finger_protein_606,DENND5A->DENN_domain_containing_5A,chr11:9160372-9286937:-	HCC1806_BREAST	0.07	0.07	0.015	TRUE	0	0	0	1	0	FALSE	ACH-000624
HS821T_FIBROBLAST	COL1A1--COL4A1	567	123	COL1A1	12718	chr17:48267057:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	31661	3151	0.02	0.18	5.6979	1.2361	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.02	0.18	6.934	TRUE	0	0	0	4	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	511	174	COL1A1	12966	chr17:48266809:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	29437	11812	0.02	0.05	5.1352	1.7486	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0.02	0.05	6.8838	TRUE	0	0	0	17	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	522	21	COL1A1	13229	chr17:48266546:-	COL4A1	55990	chr13:110818641:-	INCL_NON_REF_SPLICE	YES	28614	3042	0.02	0.15	5.2457	0.211	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.02	0.15	5.4567	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	FN1--COL1A1	472	19	FN1	36954	chr2:216243980:-	COL1A1	69586	chr17:48264124:-	INCL_NON_REF_SPLICE	YES	18093	22471	0.03	0.02	4.7432	0.1909	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS821T_FIBROBLAST	0.02	0.03	4.9341	TRUE	0	0	0	13	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	435	106	COL1A1	11562	chr17:48268213:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	26116	3151	0.02	0.15	4.3714	1.0652	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.02	0.15	5.4366	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	279	200	COL1A1	15391	chr17:48264384:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	25565	3151	0.02	0.13	2.8037	2.0099	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.02	0.13	4.8136	TRUE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	216	205	COL1A1	15399	chr17:48264376:-	COL4A1	28383	chr13:110861774:-	ONLY_REF_SPLICE	YES	26565	3124	0.02	0.12	2.1706	2.0601	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.02	0.12	4.2307	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	TIMM23B--LINC00843	146	44	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4672	0.4422	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS821T_FIBROBLAST	1	1	1.9094	TRUE	508	994	45	981	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	5	303	COL1A1	14310	chr17:48265465:-	FN1	22230	chr2:216300791:-	INCL_NON_REF_SPLICE	YES	26122	2	0.01	0.99	0.0502	3.0449	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0.01	0.99	3.0951	TRUE	0	0	0	7	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	4	300	COL1A1	14314	chr17:48265461:-	FN1	22235	chr2:216300786:-	INCL_NON_REF_SPLICE	YES	26550	2	0.01	0.99	0.0402	3.0148	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0.01	0.99	3.055	TRUE	0	0	0	7	0	FALSE	ACH-000526
HS821T_FIBROBLAST	TIMM23--RP11-464F9.1	77	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	210	1	0.28	0.99	0.7738	0.0402	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS821T_FIBROBLAST	0.28	0.99	0.814	TRUE	519	3926	326	965	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	3	281	COL1A1	15933	chr17:48263842:-	FN1	26925	chr2:216295503:-	INCL_NON_REF_SPLICE	YES	24285	14293	0.01	0.02	0.0301	2.8238	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0.01	0.02	2.8539	TRUE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	23	191	COL1A1	14521	chr17:48265254:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	25001	3151	0.01	0.06	0.2311	1.9194	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.01	0.06	2.1505	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	41	113	COL1A1	12369	chr17:48267406:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	30491	3151	0.01	0.05	0.412	1.1356	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.01	0.05	1.5476	TRUE	0	0	0	4	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	22	169	COL1A1	12718	chr17:48267057:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	31869	11812	0.01	0.02	0.2211	1.6983	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0.01	0.02	1.9194	TRUE	0	0	0	17	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	46	38	COL1A1	6456	chr17:48273319:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	26941	3151	0	0.03	0.4623	0.3819	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.03	0.8442	TRUE	0	0	0	4	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	12	173	COL1A1	13867	chr17:48265908:-	COL4A1	35744	chr13:110850918:-	INCL_NON_REF_SPLICE	YES	26898	3368	0.01	0.05	0.1206	1.7385	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.01	0.05	1.8591	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	3	206	COL1A1	12999	chr17:48266776:-	FN1	22236	chr2:216300785:-	INCL_NON_REF_SPLICE	YES	27109	2	0.01	0.99	0.0301	2.0701	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0.01	0.99	2.1002	TRUE	0	0	0	17	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	20	136	COL1A1	13032	chr17:48266743:-	COL4A1	32986	chr13:110855941:-	INCL_NON_REF_SPLICE	YES	27374	3364	0.01	0.04	0.201	1.3667	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.01	0.04	1.5677	TRUE	0	0	0	4	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	5	195	COL1A1	13876	chr17:48265899:-	COL4A1	27608	chr13:110862549:-	INCL_NON_REF_SPLICE	YES	27134	3086	0.01	0.06	0.0502	1.9596	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.01	0.06	2.0098	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	3	201	COL1A1	15399	chr17:48264376:-	COL4A1	32982	chr13:110855945:-	INCL_NON_REF_SPLICE	NO	26565	3348	0.01	0.06	0.0301	2.0199	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.01	0.06	2.05	FALSE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	45	32	COL1A1	15391	chr17:48264384:-	COL4A1	55981	chr13:110818650:-	INCL_NON_REF_SPLICE	YES	25565	3296	0	0.02	0.4522	0.3216	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.02	0.7738	TRUE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	1	205	COL1A1	14930	chr17:48264845:-	COL4A1	27598	chr13:110862559:-	ONLY_REF_SPLICE	NO	26621	3441	0.01	0.06	0.01	2.0601	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.01	0.06	2.0701	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	OR51S1--TP53I11	52	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5226	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HS821T_FIBROBLAST	1	1	0.5226	TRUE	402	216	10	229	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	15	145	COL1A1	15650	chr17:48264125:-	FN1	58080	chr2:216243979:-	INCL_NON_REF_SPLICE	YES	22542	18125	0.01	0.01	0.1507	1.4571	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0.01	0.01	1.6078	TRUE	0	0	0	18	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	3	187	COL1A1	13849	chr17:48265926:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	NO	25761	3151	0.01	0.06	0.0301	1.8792	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.01	0.06	1.9093	FALSE	0	0	0	4	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	4	181	COL1A1	14297	chr17:48265478:-	COL4A1	35704	chr13:110850958:-	INCL_NON_REF_SPLICE	YES	25926	2912	0.01	0.06	0.0402	1.8189	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.01	0.06	1.8591	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	3	183	COL1A1	13655	chr17:48266120:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	NO	25892	3151	0.01	0.06	0.0301	1.839	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.01	0.06	1.8691	FALSE	0	0	0	4	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	3	181	COL1A1	12383	chr17:48267392:-	FN1	22236	chr2:216300785:-	INCL_NON_REF_SPLICE	YES	31193	2	0.01	0.99	0.0301	1.8189	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0.01	0.99	1.849	TRUE	0	0	0	17	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	3	180	COL1A1	12967	chr17:48266808:-	FN1	22524	chr2:216300497:-	INCL_NON_REF_SPLICE	NO	29485	11105	0.01	0.02	0.0301	1.8089	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0.01	0.02	1.839	FALSE	0	0	0	17	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	5	171	COL1A1	13473	chr17:48266302:-	COL4A1	35696	chr13:110850966:-	INCL_NON_REF_SPLICE	YES	26852	2834	0.01	0.06	0.0502	1.7184	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.01	0.06	1.7686	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	6	165	COL1A1	13195	chr17:48266580:-	FN1	29254	chr2:216289904:-	INCL_NON_REF_SPLICE	YES	29320	13317	0.01	0.01	0.0603	1.6581	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0.01	0.01	1.7184	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	13	127	COL1A1	12921	chr17:48266854:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	NO	28165	3151	0	0.04	0.1306	1.2763	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.04	1.4069	FALSE	0	0	0	4	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	7	150	COL1A1	13440	chr17:48266335:-	COL4A1	35744	chr13:110850918:-	INCL_NON_REF_SPLICE	YES	26433	3368	0.01	0.04	0.0703	1.5074	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.01	0.04	1.5777	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	10	133	COL1A1	13004	chr17:48266771:-	COL4A1	32985	chr13:110855942:-	INCL_NON_REF_SPLICE	YES	27145	3397	0.01	0.04	0.1005	1.3366	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.01	0.04	1.4371	TRUE	0	0	0	4	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	39	13	COL1A1	9774	chr17:48270001:-	COL4A1	54027	chr13:110822002:-	INCL_NON_REF_SPLICE	NO	29192	3224	0	0.02	0.3919	0.1306	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.02	0.5225	FALSE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	FN1--COL1A1	36	20	FN1	12511	chr2:216285416:-	COL1A1	54970	chr17:48278959:-	INCL_NON_REF_SPLICE	YES	14906	0	0	1	0.3618	0.201	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS821T_FIBROBLAST	0	1	0.5628	TRUE	0	0	0	5	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	26	57	COL1A1	7649	chr17:48272126:-	COL4A1	30761	chr13:110859037:-	INCL_NON_REF_SPLICE	YES	25971	2826	0	0.03	0.2613	0.5728	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.03	0.8341	TRUE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	3	149	COL1A1	13224	chr17:48266551:-	COL4A1	34059	chr13:110853825:-	INCL_NON_REF_SPLICE	YES	29064	3205	0.01	0.05	0.0301	1.4973	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.01	0.05	1.5274	TRUE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	3	148	COL1A1	13181	chr17:48266594:-	COL4A1	32989	chr13:110855938:-	INCL_NON_REF_SPLICE	YES	29694	3326	0.01	0.04	0.0301	1.4873	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0.01	0.04	1.5174	TRUE	0	0	0	4	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	10	116	COL1A1	12547	chr17:48267228:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	NO	31575	3151	0	0.04	0.1005	1.1657	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.04	1.2662	FALSE	0	0	0	4	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	3	141	COL1A1	9412	chr17:48270363:-	FN1	22275	chr2:216300746:-	INCL_NON_REF_SPLICE	YES	29717	13	0	0.92	0.0301	1.4169	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0.92	1.447	TRUE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	5	129	COL1A1	12998	chr17:48266777:-	COL4A1	34015	chr13:110853869:-	INCL_NON_REF_SPLICE	YES	26861	3460	0	0.04	0.0502	1.2964	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.04	1.3466	TRUE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	6	117	COL1A1	9381	chr17:48270394:-	FN1	26925	chr2:216295503:-	INCL_NON_REF_SPLICE	YES	30611	14293	0	0.01	0.0603	1.1758	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0.01	1.2361	TRUE	0	0	0	8	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	3	127	COL1A1	13882	chr17:48265893:-	COL4A1	41986	chr13:110838806:-	INCL_NON_REF_SPLICE	NO	28089	3482	0	0.04	0.0301	1.2763	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.04	1.3064	FALSE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	3	126	COL1A1	15398	chr17:48264377:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	26141	20104	0	0.01	0.0301	1.2662	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0.01	1.2963	TRUE	0	0	0	10	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	11	92	COL1A1	13029	chr17:48266746:-	COL4A1	41911	chr13:110838881:-	INCL_NON_REF_SPLICE	NO	27155	3065	0	0.03	0.1105	0.9245	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.03	1.035	FALSE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	9	99	COL1A1	8457	chr17:48271318:-	FN1	34659	chr2:216284106:-	INCL_NON_REF_SPLICE	YES	29824	16275	0	0.01	0.0904	0.9949	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0.01	1.0853	TRUE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	3	122	COL1A1	14920	chr17:48264855:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	25004	20104	0	0.01	0.0301	1.226	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0.01	1.2561	TRUE	0	0	0	10	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	7	105	COL1A1	13456	chr17:48266319:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	26314	20104	0	0.01	0.0703	1.0552	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0.01	1.1255	TRUE	0	0	0	16	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	1	128	COL1A1	8284	chr17:48271491:-	FN1	22230	chr2:216300791:-	ONLY_REF_SPLICE	NO	29546	2	0	0.98	0.01	1.2863	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0.98	1.2963	TRUE	0	0	0	6	0	FALSE	ACH-000526
HS821T_FIBROBLAST	PLXDC1--TAF13	33	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3316	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS821T_FIBROBLAST	1	1	0.3316	TRUE	7	10	0	216	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	4	113	COL1A1	12700	chr17:48267075:-	COL4A1	34657	chr13:110853227:-	INCL_NON_REF_SPLICE	YES	31339	2843	0	0.04	0.0402	1.1356	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.04	1.1758	TRUE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	3	116	COL1A1	12529	chr17:48267246:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	NO	31434	3151	0	0.04	0.0301	1.1657	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.04	1.1958	FALSE	0	0	0	4	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	3	111	COL1A1	13440	chr17:48266335:-	COL4A1	41911	chr13:110838881:-	INCL_NON_REF_SPLICE	YES	26433	3065	0	0.04	0.0301	1.1155	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.04	1.1456	TRUE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	4	107	COL1A1	11587	chr17:48268188:-	COL4A1	32988	chr13:110855939:-	INCL_NON_REF_SPLICE	NO	26724	3361	0	0.03	0.0402	1.0753	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.03	1.1155	FALSE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	5	101	COL1A1	7697	chr17:48272078:-	FN1	22289	chr2:216300732:-	INCL_NON_REF_SPLICE	YES	29299	16	0	0.87	0.0502	1.015	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0.87	1.0652	TRUE	0	0	0	13	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	1	116	COL1A1	11597	chr17:48268178:-	COL4A1	23332	chr13:110895081:-	ONLY_REF_SPLICE	YES	28202	1499	0	0.07	0.01	1.1657	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.07	1.1757	TRUE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	2	108	COL1A1	11597	chr17:48268178:-	COL4A1	29962	chr13:110859836:-	ONLY_REF_SPLICE	YES	28202	2621	0	0.04	0.0201	1.0853	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.04	1.1054	TRUE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	9	79	COL1A1	12393	chr17:48267382:-	COL4A1	43097	chr13:110835587:-	INCL_NON_REF_SPLICE	YES	30738	4185	0	0.02	0.0904	0.7939	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.02	0.8843	TRUE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	MT-TA--MT-TC	27	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2713	0.0402	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS821T_FIBROBLAST	1	1	0.3115	FALSE	462	80	0	856	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	4	92	COL1A1	9617	chr17:48270158:-	COL4A1	31787	chr13:110857885:-	ONLY_REF_SPLICE	NO	29599	3062	0	0.03	0.0402	0.9245	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.03	0.9647	TRUE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	MT-ND6--MT-TE	22	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2211	0.0201	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS821T_FIBROBLAST	1	1	0.2412	FALSE	499	1288	110	792	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	3	77	COL1A1	13422	chr17:48266353:-	COL4A1	45888	chr13:110831323:-	INCL_NON_REF_SPLICE	YES	27187	3569	0	0.02	0.0301	0.7738	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.02	0.8039	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	4	73	COL1A1	12982	chr17:48266793:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	27906	20104	0	0	0.0402	0.7336	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0	0.7738	TRUE	0	0	0	17	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	17	20	COL1A1	5780	chr17:48273995:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	22177	3151	0	0.01	0.1708	0.201	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.01	0.3718	TRUE	0	0	0	4	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	3	73	COL1A1	8418	chr17:48271357:-	COL4A1	28393	chr13:110861764:-	INCL_NON_REF_SPLICE	YES	28828	2997	0	0.02	0.0301	0.7336	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.02	0.7637	TRUE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	10	45	COL1A1	7831	chr17:48271944:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	27133	20104	0	0	0.1005	0.4522	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0	0.5527	TRUE	0	0	0	14	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	4	69	COL1A1	12367	chr17:48267408:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	30777	20104	0	0	0.0402	0.6934	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0	0.7336	TRUE	0	0	0	13	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	3	72	COL1A1	13231	chr17:48266544:-	COL4A1	46758	chr13:110830453:-	INCL_NON_REF_SPLICE	YES	28293	2895	0	0.03	0.0301	0.7235	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.03	0.7536	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	4	66	COL1A1	12383	chr17:48267392:-	FN1	61593	chr2:216239966:-	INCL_NON_REF_SPLICE	YES	31193	20442	0	0	0.0402	0.6633	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0	0.7035	TRUE	0	0	0	13	0	FALSE	ACH-000526
HS821T_FIBROBLAST	MT-ND6--MT-TE	20	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.201	0.0201	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS821T_FIBROBLAST	1	1	0.2211	FALSE	499	1288	110	792	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	5	61	COL1A1	7985	chr17:48271790:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	28312	3151	0	0.02	0.0502	0.613	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.02	0.6632	TRUE	0	0	0	4	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	5	58	COL1A1	8030	chr17:48271745:-	COL4A1	34046	chr13:110853838:-	INCL_NON_REF_SPLICE	YES	28693	3137	0	0.02	0.0502	0.5829	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.02	0.6331	TRUE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	5	57	COL1A1	6826	chr17:48272949:-	FN1	22519	chr2:216300502:-	INCL_NON_REF_SPLICE	YES	26796	11093	0	0.01	0.0502	0.5728	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0.01	0.623	TRUE	0	0	0	13	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	13	24	COL1A1	13229	chr17:48266546:-	COL4A1	51923	chr13:110825093:-	INCL_NON_REF_SPLICE	YES	28614	3025	0	0.01	0.1306	0.2412	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.01	0.3718	TRUE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	4	59	COL1A1	6831	chr17:48272944:-	FN1	22524	chr2:216300497:-	INCL_NON_REF_SPLICE	YES	26961	11105	0	0.01	0.0402	0.5929	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0.01	0.6331	TRUE	0	0	0	13	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	11	30	COL1A1	6483	chr17:48273292:-	COL4A1	43061	chr13:110835623:-	INCL_NON_REF_SPLICE	YES	27361	4325	0	0.01	0.1105	0.3015	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.01	0.412	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	3	61	COL1A1	6963	chr17:48272812:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	27783	11812	0	0.01	0.0301	0.613	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0.01	0.6431	TRUE	0	0	0	13	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	3	57	COL1A1	14288	chr17:48265487:-	COL4A1	49536	chr13:110827609:-	INCL_NON_REF_SPLICE	NO	26019	3167	0	0.02	0.0301	0.5728	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.02	0.6029	FALSE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	EEF1DP3--FRY	15	9	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	3	2	0.89	0.92	0.1507	0.0904	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS821T_FIBROBLAST	0.89	0.92	0.2411	FALSE	20	24	2	21	0	FALSE	ACH-000526
HS821T_FIBROBLAST	RP11-680G10.1--GSE1	16	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	18	1	0.54	0.1608	0.0502	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS821T_FIBROBLAST	0.54	1	0.211	TRUE	465	1949	224	605	0	FALSE	ACH-000526
HS821T_FIBROBLAST	MIPEPP3--ABHD12	17	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1708	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	HS821T_FIBROBLAST	1	1	0.1708	TRUE	64	202	9	44	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	5	47	COL1A1	7098	chr17:48272677:-	COL4A1	35704	chr13:110850958:-	INCL_NON_REF_SPLICE	YES	29077	2912	0	0.02	0.0502	0.4723	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.02	0.5225	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	3	55	COL1A1	6820	chr17:48272955:-	FN1	22512	chr2:216300509:-	INCL_NON_REF_SPLICE	YES	26933	10919	0	0.01	0.0301	0.5527	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0.01	0.5828	TRUE	0	0	0	13	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	3	55	COL1A1	7798	chr17:48271977:-	FN1	48829	chr2:216256527:-	INCL_NON_REF_SPLICE	NO	26633	15251	0	0	0.0301	0.5527	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0	0.5828	FALSE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	C15orf57--CBX3	13	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	58	20	0.31	0.57	0.1306	0.1306	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS821T_FIBROBLAST	0.31	0.57	0.2612	TRUE	267	562	48	632	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	11	21	COL1A1	16066	chr17:48263709:-	FN1	65364	chr2:216235050:-	INCL_NON_REF_SPLICE	YES	23019	21322	0	0	0.1105	0.211	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0	0.3215	TRUE	0	0	0	7	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	10	24	COL1A1	5922	chr17:48273853:-	COL4A1	35744	chr13:110850918:-	INCL_NON_REF_SPLICE	YES	22584	3368	0	0.01	0.1005	0.2412	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.01	0.3417	TRUE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	MT-ND6--MT-TE	13	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.1306	0.1206	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS821T_FIBROBLAST	0.89	1	0.2512	FALSE	499	1288	110	792	0	FALSE	ACH-000526
HS821T_FIBROBLAST	RP11-680G10.1--GSE1	14	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1407	0.0804	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS821T_FIBROBLAST	1	1	0.2211	TRUE	458	1351	185	561	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	3	50	COL1A1	7841	chr17:48271934:-	FN1	61587	chr2:216239972:-	INCL_NON_REF_SPLICE	YES	29011	20488	0	0	0.0301	0.5025	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0	0.5326	TRUE	0	0	0	14	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	2	53	COL1A1	6847	chr17:48272928:-	COL4A1	24581	chr13:110866173:-	ONLY_REF_SPLICE	YES	27863	1930	0	0.03	0.0201	0.5326	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.03	0.5527	TRUE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	3	46	COL1A1	7985	chr17:48271790:-	FN1	61608	chr2:216239951:-	INCL_NON_REF_SPLICE	YES	28351	20354	0	0	0.0301	0.4623	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0	0.4924	TRUE	0	0	0	14	0	FALSE	ACH-000526
HS821T_FIBROBLAST	AC073072.5--STEAP1B	14	1	AC073072.5	1053	chr7:22767187:-	STEAP1B	6230	chr7:22672541:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1407	0.01	NEIGHBORS[92470],AC073072.5->chr7:22765014-22767239:-,STEAP1B->STEAP_family_member_1B,chr7:22459063-22672544:-	HS821T_FIBROBLAST	1	1	0.1507	FALSE	0	0	0	5	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	4	37	COL1A1	7129	chr17:48272646:-	COL4A1	43061	chr13:110835623:-	INCL_NON_REF_SPLICE	NO	29506	4325	0	0.01	0.0402	0.3718	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.01	0.412	FALSE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	3	39	COL1A1	13867	chr17:48265908:-	COL4A1	50845	chr13:110826300:-	INCL_NON_REF_SPLICE	YES	26898	3198	0	0.01	0.0301	0.3919	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.01	0.422	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	9	13	COL1A1	10618	chr17:48269157:-	COL4A1	55082	chr13:110819549:-	INCL_NON_REF_SPLICE	NO	25580	2818	0	0.01	0.0904	0.1306	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.01	0.221	FALSE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	9	11	COL1A1	5762	chr17:48274013:-	COL4A1	46933	chr13:110830278:-	INCL_NON_REF_SPLICE	NO	20864	3181	0	0.01	0.0904	0.1105	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.01	0.2009	FALSE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	5	27	COL1A1	7118	chr17:48272657:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	29752	20104	0	0	0.0502	0.2713	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0	0.3215	TRUE	0	0	0	15	0	FALSE	ACH-000526
HS821T_FIBROBLAST	PRR16--CTD-2334D19.1	10	4	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	237	0	0.06	1	0.1005	0.0402	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS821T_FIBROBLAST	0.06	1	0.1407	FALSE	56	216	12	147	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	3	31	COL1A1	7598	chr17:48272177:-	COL4A1	45438	chr13:110831773:-	INCL_NON_REF_SPLICE	NO	28182	3003	0	0.01	0.0301	0.3115	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.01	0.3416	FALSE	0	0	0	4	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	6	17	COL1A1	6258	chr17:48273517:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	27430	20104	0	0	0.0603	0.1708	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0	0.2311	TRUE	0	0	0	10	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	6	17	COL1A1	6259	chr17:48273516:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	27470	20104	0	0	0.0603	0.1708	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0	0.2311	TRUE	0	0	0	10	0	FALSE	ACH-000526
HS821T_FIBROBLAST	C15orf57--CBX3	7	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	59	20	0.22	0.46	0.0703	0.1005	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS821T_FIBROBLAST	0.22	0.46	0.1708	TRUE	267	562	48	632	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	5	18	COL1A1	6794	chr17:48272981:-	COL4A1	49459	chr13:110827686:-	INCL_NON_REF_SPLICE	YES	25706	3566	0	0.01	0.0502	0.1809	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.01	0.2311	TRUE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	4	22	COL1A1	5797	chr17:48273978:-	COL4A1	35707	chr13:110850955:-	INCL_NON_REF_SPLICE	YES	23312	2964	0	0.01	0.0402	0.2211	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.01	0.2613	TRUE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	4	20	COL1A1	8471	chr17:48271304:-	COL4A1	50049	chr13:110827096:-	ONLY_REF_SPLICE	YES	30196	3061	0	0.01	0.0402	0.201	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.01	0.2412	TRUE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	5	15	COL1A1	13845	chr17:48265930:-	COL4A1	58250	chr13:110815840:-	INCL_NON_REF_SPLICE	YES	25714	3014	0	0.01	0.0502	0.1507	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.01	0.2009	TRUE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	1	30	COL1A1	6100	chr17:48273675:-	COL4A1	31787	chr13:110857885:-	ONLY_REF_SPLICE	NO	24931	3062	0	0.01	0.01	0.3015	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.01	0.3115	TRUE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	5	14	COL1A1	10618	chr17:48269157:-	COL4A1	53974	chr13:110822055:-	INCL_NON_REF_SPLICE	YES	25580	3955	0	0	0.0502	0.1407	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0	0.1909	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	5	13	COL1A1	12324	chr17:48267451:-	COL4A1	56017	chr13:110818614:-	INCL_NON_REF_SPLICE	YES	30953	2950	0	0.01	0.0502	0.1306	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.01	0.1808	TRUE	0	0	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	3	20	COL1A1	5788	chr17:48273987:-	COL4A1	28383	chr13:110861774:-	INCL_NON_REF_SPLICE	YES	21846	3124	0	0.01	0.0301	0.201	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.01	0.2311	TRUE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	MT-ND6--MT-TE	3	18	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0301	0.1809	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS821T_FIBROBLAST	0.88	1	0.211	FALSE	499	1288	110	792	0	FALSE	ACH-000526
HS821T_FIBROBLAST	MT-TA--MT-TC	6	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0603	0.0402	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS821T_FIBROBLAST	1	1	0.1005	FALSE	462	80	0	856	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	1	22	COL1A1	5797	chr17:48273978:-	COL4A1	32973	chr13:110855954:-	ONLY_REF_SPLICE	NO	23312	3481	0	0.01	0.01	0.2211	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0.01	0.2311	TRUE	0	0	0	4	0	FALSE	ACH-000526
HS821T_FIBROBLAST	MT-ND6--COL1A2	6	2	MT-ND6	1320	chrM:14354:-	COL1A2	29696	chr7:94053690:+	INCL_NON_REF_SPLICE	NO	2741	15653	0	0	0.0603	0.0201	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS821T_FIBROBLAST	0	0	0.0804	FALSE	0	1	0	7	0	FALSE	ACH-000526
HS821T_FIBROBLAST	MT-ND6--MT-TE	3	14	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	6	0	0.74	1	0.0301	0.1407	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS821T_FIBROBLAST	0.74	1	0.1708	FALSE	499	1288	110	792	0	FALSE	ACH-000526
HS821T_FIBROBLAST	CTD-2337A12.1--CAST	6	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0603	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS821T_FIBROBLAST	1	1	0.0603	TRUE	347	1186	183	220	0	FALSE	ACH-000526
HS821T_FIBROBLAST	MT-ND6--MT-TE	3	12	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0301	0.1206	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS821T_FIBROBLAST	0.94	1	0.1507	FALSE	499	1288	110	792	0	FALSE	ACH-000526
HS821T_FIBROBLAST	ZNF654--HMGB2	6	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0603	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HS821T_FIBROBLAST	1	1	0.0603	TRUE	0	0	0	518	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	5	3	COL1A1	5789	chr17:48273986:-	COL4A1	55082	chr13:110819549:-	INCL_NON_REF_SPLICE	NO	21870	2818	0	0	0.0502	0.0301	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0	0.0803	FALSE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	NRIP1--AF127936.7	5	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0502	0.0201	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS821T_FIBROBLAST	0.78	1	0.0703	FALSE	292	1546	117	613	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--FN1	4	5	COL1A1	4224	chr17:48275551:-	FN1	61577	chr2:216239982:-	INCL_NON_REF_SPLICE	YES	15631	20051	0	0	0.0402	0.0502	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS821T_FIBROBLAST	0	0	0.0904	FALSE	0	0	0	4	0	FALSE	ACH-000526
HS821T_FIBROBLAST	SERPINE1--MT-ND4	5	1	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	5939	9596	0	0	0.0502	0.01	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HS821T_FIBROBLAST	0	0	0.0602	FALSE	1	0	0	29	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	3	8	COL1A1	3140	chr17:48276635:-	COL4A1	25765	chr13:110864826:-	INCL_NON_REF_SPLICE	YES	13980	2933	0	0	0.0301	0.0804	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0	0.1105	TRUE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	IGFBP7--MT-ND4L	5	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0502	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS821T_FIBROBLAST	1	1	0.0502	FALSE	1	0	0	30	0	FALSE	ACH-000526
HS821T_FIBROBLAST	MT-ND6--COL1A2	4	2	MT-ND6	1313	chrM:14361:-	COL1A2	30434	chr7:94054428:+	INCL_NON_REF_SPLICE	YES	2947	16277	0	0	0.0402	0.0201	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS821T_FIBROBLAST	0	0	0.0603	FALSE	0	1	0	7	0	FALSE	ACH-000526
HS821T_FIBROBLAST	NRIP1--AF127936.7	4	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.43	1	0.0402	0.0201	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS821T_FIBROBLAST	0.43	1	0.0603	FALSE	125	705	46	456	0	FALSE	ACH-000526
HS821T_FIBROBLAST	RP11-444D3.1--SOX5	4	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0402	0.01	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS821T_FIBROBLAST	1	1	0.0502	TRUE	477	1352	189	275	0	FALSE	ACH-000526
HS821T_FIBROBLAST	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS821T_FIBROBLAST	1	1	0.0402	FALSE	499	1288	110	792	0	FALSE	ACH-000526
HS821T_FIBROBLAST	NRIP1--AF127936.7	3	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.0301	0.0301	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS821T_FIBROBLAST	0.3	1	0.0602	FALSE	164	806	69	479	0	FALSE	ACH-000526
HS821T_FIBROBLAST	SMYD2--KCNH1	3	3	SMYD2	1326	chr1:214454770:+	KCNH1	18524	chr1:211280719:-	ONLY_REF_SPLICE	YES	57	12	0.1	0.33	0.0301	0.0301	SMYD2->SET_and_MYND_domain_containing_2,chr1:214454445-214510474:+,KCNH1->Oncogene{Bushman},chr1:210856555-211307457:-,potassium_voltage-gated_channel_subfamily_H_member_1	HS821T_FIBROBLAST	0.1	0.33	0.0602	TRUE	0	0	0	1	0	TRUE	ACH-000526
HS821T_FIBROBLAST	FN1--COL1A1	3	2	FN1	42558	chr2:216237074:-	COL1A1	71216	chr17:48262494:-	INCL_NON_REF_SPLICE	YES	18879	5519	0	0	0.0301	0.0201	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS821T_FIBROBLAST	0	0	0.0502	FALSE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	MT-ND6--COL1A2	3	2	MT-ND6	1320	chrM:14354:-	COL1A2	28299	chr7:94052293:+	INCL_NON_REF_SPLICE	NO	2741	15332	0	0	0.0301	0.0201	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS821T_FIBROBLAST	0	0	0.0502	FALSE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	RP11-155G15.2--RP11-1E3.1	3	2	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0.0201	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HS821T_FIBROBLAST	1	1	0.0502	FALSE	46	201	11	112	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	3	1	COL1A1	2858	chr17:48276917:-	COL4A1	54018	chr13:110822011:-	INCL_NON_REF_SPLICE	NO	15289	3285	0	0	0.0301	0.01	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0	0.0401	FALSE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	FN1--COL1A1	3	1	FN1	17563	chr2:216273112:-	COL1A1	70835	chr17:48262875:-	INCL_NON_REF_SPLICE	YES	14239	9513	0	0	0.0301	0.01	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS821T_FIBROBLAST	0	0	0.0401	FALSE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	HNRNPR--TCEA3	3	0	HNRNPR	4150	chr1:23664247:-	TCEA3	32940	chr1:23710910:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	LOCAL_REARRANGEMENT:-:[36725],HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,TCEA3->chr1:23707554-23751233:-,transcription_elongation_factor_A3	HS821T_FIBROBLAST	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000526
HS821T_FIBROBLAST	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS821T_FIBROBLAST	1	1	0.0301	FALSE	462	80	0	856	0	FALSE	ACH-000526
HS821T_FIBROBLAST	EEF1DP3--FRY	2	2	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	13	2	0.24	0.67	0.0201	0.0201	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS821T_FIBROBLAST	0.24	0.67	0.0402	FALSE	18	26	2	21	0	FALSE	ACH-000526
HS821T_FIBROBLAST	RNF152--RP11-879F14.1	2	2	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	YES	14	0	0.22	1	0.0201	0.0201	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	HS821T_FIBROBLAST	0.22	1	0.0402	FALSE	119	124	24	18	0	FALSE	ACH-000526
HS821T_FIBROBLAST	RNF152--RP11-879F14.1	2	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	14	0	0.18	1	0.0201	0.01	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	HS821T_FIBROBLAST	0.18	1	0.0301	FALSE	275	472	65	43	0	FALSE	ACH-000526
HS821T_FIBROBLAST	RP11-358H9.1--RP11-400N13.1	2	1	RP11-358H9.1	2827	chr1:222626082:-	RP11-400N13.1	9106	chr1:222262907:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0.01	NEIGHBORS[65306],RP11-358H9.1->chr1:222626082-222628047:-,RP11-400N13.1->chr1:222262511-222560776:-	HS821T_FIBROBLAST	1	1	0.0301	FALSE	0	22	0	9	0	FALSE	ACH-000526
HS821T_FIBROBLAST	UGDH--SMIM14	2	1	UGDH	2029	chr4:39528903:-	SMIM14	19868	chr4:39606800:-	ONLY_REF_SPLICE	YES	816	336	0	0.01	0.0201	0.01	LOCAL_REARRANGEMENT:-:[18019],UGDH->UDP-glucose_6-dehydrogenase,chr4:39500375-39529931:-,SMIM14->chr4:39547950-39640710:-,small_integral_membrane_protein_14	HS821T_FIBROBLAST	0	0.01	0.0301	FALSE	0	1	0	4	0	FALSE	ACH-000526
HS821T_FIBROBLAST	CCBE1--CPLX4	2	0	CCBE1	2839	chr18:57333308:-	CPLX4	21532	chr18:56980004:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CCBE1->chr18:57098172-57364612:-,collagen_and_calcium_binding_EGF_domains_1,CPLX4->chr18:56942388-56985881:-,complexin_4	HS821T_FIBROBLAST	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000526
HS821T_FIBROBLAST	PPP1R12C--CNN2	2	0	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	HS821T_FIBROBLAST	1	1	0.0201	TRUE	35	34	3	30	0	FALSE	ACH-000526
HS821T_FIBROBLAST	ZEB2--GTDC1	2	0	ZEB2	5479	chr2:145274845:-	GTDC1	61759	chr2:144709640:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NEIGHBORS[51513],ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1	HS821T_FIBROBLAST	1	1	0.0201	FALSE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	ZZZ3--AK5	2	0	ZZZ3	1158	chr1:78148947:-	AK5	43939	chr1:78001532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:-:+:[2450],ZZZ3->chr1:78028101-78149104:-,zinc_finger_ZZ-type_containing_3,AK5->adenylate_kinase_5,chr1:77747736-78025651:+	HS821T_FIBROBLAST	1	1	0.0201	TRUE	0	1	0	1	0	TRUE	ACH-000526
HS821T_FIBROBLAST	COL1A1--COL4A1	1	2	COL1A1	2858	chr17:48276917:-	COL4A1	25626	chr13:110864965:-	ONLY_REF_SPLICE	YES	15289	2765	0	0	0.01	0.0201	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS821T_FIBROBLAST	0	0	0.0301	FALSE	0	0	0	2	0	FALSE	ACH-000526
HS821T_FIBROBLAST	STARD13--N4BP2L2	1	2	STARD13	10038	chr13:33739474:-	N4BP2L2	42022	chr13:33092140:-	ONLY_REF_SPLICE	YES	42	65	0.07	0.04	0.01	0.0201	STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	HS821T_FIBROBLAST	0.04	0.07	0.0301	TRUE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	AC073072.5--STEAP1B	1	1	AC073072.5	1053	chr7:22767187:-	STEAP1B	9322	chr7:22534505:-	ONLY_REF_SPLICE	YES	0	19	1	0.1	0.01	0.01	NEIGHBORS[92470],AC073072.5->chr7:22765014-22767239:-,STEAP1B->STEAP_family_member_1B,chr7:22459063-22672544:-	HS821T_FIBROBLAST	0.1	1	0.02	FALSE	1	7	0	3	0	FALSE	ACH-000526
HS821T_FIBROBLAST	COL5A1--C9orf3	1	1	COL5A1	60960	chr9:137722022:+	C9orf3	106983	chr9:97848964:+	ONLY_REF_SPLICE	YES	1490	180	0	0.01	0.01	0.01	COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	HS821T_FIBROBLAST	0	0.01	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	HSPG2--LAYN	1	1	HSPG2	23228	chr1:22188250:-	LAYN	68656	chr11:111430820:+	ONLY_REF_SPLICE	YES	401	147	0	0.01	0.01	0.01	HSPG2->Oncogene{Bushman},chr1:22148738-22263790:-,heparan_sulfate_proteoglycan_2,LAYN->chr11:111411005-111432264:+,layilin	HS821T_FIBROBLAST	0	0.01	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	LEPRE1--WDR26	1	1	LEPRE1	15809	chr1:43212924:-	WDR26	43395	chr1:224574204:-	ONLY_REF_SPLICE	YES	516	29	0	0.06	0.01	0.01	LEPRE1->chr1:43212006-43232755:-,WDR26->WD_repeat_domain_26,chr1:224572845-224624735:-	HS821T_FIBROBLAST	0	0.06	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	RP11-152P17.2--EMC2	1	1	RP11-152P17.2	1144	chr8:107072609:-	EMC2	22732	chr8:109482055:+	ONLY_REF_SPLICE	NO	13	170	0.13	0.01	0.01	0.01	RP11-152P17.2->chr8:106792474-107072752:-,EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+	HS821T_FIBROBLAST	0.01	0.13	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000526
HS821T_FIBROBLAST	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.01	0.01	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS821T_FIBROBLAST	1	1	0.02	TRUE	274	363	69	150	0	FALSE	ACH-000526
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	370	125	IGH@	94754	chr14:106330024:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	YES	2	86	1	0.85	4.6898	1.5844	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	6.2742	TRUE	0	0	0	3	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	219	125	IGH@	94353	chr14:106330425:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	YES	5	86	0.99	0.8	2.7758	1.5844	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.99	4.3602	TRUE	0	0	0	3	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF268--RNF6	145	58	ZNF268	10743	chr12:133768589:+	RNF6	29208	chr13:26706589:-	ONLY_REF_SPLICE	YES	1	0	1	1	1.8379	0.7352	ZNF268->chr12:133707570-133783698:+,zinc_finger_protein_268,RNF6->chr13:26706253-26796791:-,ring_finger_protein_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.5731	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	99	134	IGH@	95370	chr14:106329408:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	YES	2	86	0.99	0.73	1.2548	1.6985	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.99	2.9533	TRUE	0	0	0	3	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	111	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.4069	0.3549	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.7618	TRUE	508	994	45	981	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	58	125	IGH@	93161	chr14:106331617:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	YES	5	86	0.97	0.68	0.7352	1.5844	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	0.97	2.3196	TRUE	0	0	0	2	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NBPF3--PRDX6	68	28	NBPF3	4182	chr1:21771712:+	PRDX6	33527	chr1:173454500:+	ONLY_REF_SPLICE	YES	2	300	0.98	0.24	0.8619	0.3549	NBPF3->chr1:21766621-21811498:+,neuroblastoma_breakpoint_family_member_3,PRDX6->chr1:173446405-173457946:+,peroxiredoxin_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.98	1.2168	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	64	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	202	2	0.25	0.97	0.8112	0.038	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.97	0.8492	TRUE	519	3926	326	965	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	53	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6718	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6718	TRUE	0	0	0	518	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	47	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5957	0.0127	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6084	FALSE	462	80	0	856	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-114G22.1--ACBD6	39	25	RP11-114G22.1	13550	chr12:23125402:+	ACBD6	33088	chr1:180283857:-	ONLY_REF_SPLICE	YES	6	132	0.91	0.33	0.4943	0.3169	RP11-114G22.1->chr12:22852793-23327057:+,ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.91	0.8112	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAT1--RHBDD1	37	16	STAT1	2994	chr2:191878744:-	RHBDD1	39755	chr2:227771509:+	ONLY_REF_SPLICE	YES	23	32	0.7	0.62	0.469	0.2028	STAT1->chr2:191829084-191885686:-,signal_transducer_and_activator_of_transcription_1,RHBDD1->chr2:227700297-227863931:+,rhomboid_domain_containing_1	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.7	0.6718	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	35	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.4436	0.038	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.4816	FALSE	499	1288	110	792	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	125	IGH@	94754	chr14:106330024:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	NO	2	74	0.98	0.63	0.0127	1.5844	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.98	1.5971	TRUE	0	0	0	6	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	125	IGH@	93161	chr14:106331617:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	NO	5	74	0.96	0.63	0.0127	1.5844	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.96	1.5971	TRUE	0	0	0	5	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	125	IGH@	94353	chr14:106330425:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	NO	5	74	0.96	0.63	0.0127	1.5844	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.96	1.5971	TRUE	0	0	0	5	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	15	57	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	1	0.95	0.99	0.1901	0.7225	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	0.99	0.9126	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	11	60	MT-CO3	1322	chrM:9528:+	MT-ATP6	5185	chrM:8927:+	INCL_NON_REF_SPLICE	YES	8	50	0.9	0.59	0.1394	0.7605	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	0.9	0.8999	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF268--RNF6	10	60	ZNF268	11849	chr12:133770119:+	RNF6	29208	chr13:26706589:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1268	0.7605	ZNF268->chr12:133707570-133783698:+,zinc_finger_protein_268,RNF6->chr13:26706253-26796791:-,ring_finger_protein_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8873	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	18	17	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	82	26	0.3	0.57	0.2282	0.2155	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.57	0.4437	TRUE	267	562	48	632	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	58	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	1	0.94	0.98	0.0634	0.7352	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	0.98	0.7986	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	63	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	NO	7	0	0.9	1	0.038	0.7985	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.8365	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	17	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.2155	0.038	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2535	FALSE	499	1288	110	792	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	57	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	3	44	0.95	0.58	0.038	0.7225	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	0.95	0.7605	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	56	MT-CO3	1123	chrM:9329:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.038	0.7098	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.7478	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ1A--RP11-1103G16.1	16	1	BAZ1A	24866	chr14:35240717:-	RP11-1103G16.1	48556	chr14:30907377:-	ONLY_REF_SPLICE	YES	53	0	0.24	1	0.2028	0.0127	BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,RP11-1103G16.1->chr14:30907198-31042835:-	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.2155	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	53	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0.6718	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7098	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIATL1--RP11-307E17.8	14	7	HIATL1	4664	chr9:97200810:+	RP11-307E17.8	19630	chr9:97101118:+	ONLY_REF_SPLICE	YES	83	0	0.2	1	0.1775	0.0887	GTEx_FI:{Small_Intestine=[count:1=pct:1.8],Skin=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:+:[13603],HIATL1->chr9:97136833-97223324:+,RP11-307E17.8->chr9:97094758-97123230:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.2662	TRUE	3	6	0	6	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TL1--MT-RNR2	5	43	MT-TL1	1086	chrM:3315:+	MT-RNR2	5568	chrM:3163:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.0634	0.545	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.6084	FALSE	7	521	16	32	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	42	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.038	0.5324	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.5704	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	11	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	83	28	0.19	0.42	0.1394	0.1141	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.42	0.2535	TRUE	267	562	48	632	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf131--NBPF10	11	2	C1orf131	8422	chr1:231361110:-	NBPF10	13734	chr1:145290482:+	INCL_NON_REF_SPLICE	YES	25	0	0.34	1	0.1394	0.0254	C1orf131->chr1:231359509-231376933:-,chromosome_1_open_reading_frame_131,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	1	0.1648	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.1268	0.0761	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.2029	FALSE	499	1288	110	792	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1141	0.1268	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2409	FALSE	499	1288	110	792	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	22	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	4	1	0.87	0.96	0.0634	0.2789	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	0.96	0.3423	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TL1--MT-RNR2	3	24	MT-TL1	1039	chrM:3268:+	MT-RNR2	5556	chrM:3151:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.93	0.038	0.3042	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.3422	FALSE	7	521	16	32	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGEF12--HDAC9	7	7	ARHGEF12	11858	chr11:120295124:+	HDAC9	67650	chr7:18535885:+	ONLY_REF_SPLICE	YES	48	49	0.23	0.22	0.0887	0.0887	{Klijn_CCL:Lymphoid=1},ARHGEF12->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_12,chr11:120207787-120360645:+,HDAC9->chr7:18126572-19042039:+,histone_deacetylase_9	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.23	0.1774	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAT1--RHBDD1	4	18	STAT1	3487	chr2:191878251:-	RHBDD1	39755	chr2:227771509:+	ONLY_REF_SPLICE	YES	16	32	0.58	0.41	0.0507	0.2282	STAT1->chr2:191829084-191885686:-,signal_transducer_and_activator_of_transcription_1,RHBDD1->chr2:227700297-227863931:+,rhomboid_domain_containing_1	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.58	0.2789	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF268--RNF6	6	10	ZNF268	9113	chr12:133764658:+	RNF6	29208	chr13:26706589:-	ONLY_REF_SPLICE	YES	54	0	0.23	1	0.0761	0.1268	ZNF268->chr12:133707570-133783698:+,zinc_finger_protein_268,RNF6->chr13:26706253-26796791:-,ring_finger_protein_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.2029	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	13	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.95	0.0634	0.1648	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2282	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	3	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	10	0	0.5	1	0.0887	0.038	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.1267	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	19	MT-ND6	1134	chrM:14540:-	MT-TE	4503	chrM:14765:-	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.038	0.2408	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.2788	FALSE	499	1288	110	792	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RASAL2--RP11-375H19.2	7	3	RASAL2	1966	chr1:178063829:+	RP11-375H19.2	38908	chr1:166051842:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0887	0.038	RASAL2->Oncogene{Bushman},RAS_protein_activator_like_2,chr1:178062864-178448644:+,RP11-375H19.2->chr1:166050420-166056720:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1267	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	9332	2	0	0.8	0.0887	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.8	0.1014	FALSE	230	193	14	283	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	7	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0887	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0887	TRUE	0	0	0	81	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	6	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0761	0.038	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1141	FALSE	515	4851	409	746	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	10	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0507	0.1268	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1775	FALSE	499	1288	110	792	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LRRFIP1--DOCK10	6	1	LRRFIP1	36838	chr2:238683105:+	DOCK10	99840	chr2:225630554:-	ONLY_REF_SPLICE	YES	9	6	0.44	0.54	0.0761	0.0127	LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,DOCK10->chr2:225629807-225907162:-,dedicator_of_cytokinesis_10	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.54	0.0888	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUCO--RP11-323I1.1	6	0	SUCO	2149	chr1:172502637:+	RP11-323I1.1	31233	chr1:213904760:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0761	0	SUCO->SUN_domain_containing_ossification_factor,chr1:172501489-172580971:+,RP11-323I1.1->chr1:213904759-213967930:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0761	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	3	MT-CO3	1132	chrM:9338:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0634	0.038	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.1014	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	9	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	83	26	0.13	0.32	0.038	0.1141	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.32	0.1521	TRUE	267	562	48	632	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	5	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0634	TRUE	0	0	0	100	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	8	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.038	0.1014	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1394	FALSE	499	1288	110	792	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0634	FALSE	462	80	0	856	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0634	TRUE	0	0	0	518	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.55	1	0.0507	0.0254	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.0761	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	6	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.038	0.0761	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.1141	FALSE	499	1288	110	792	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	6	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0.0761	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1141	FALSE	499	1288	110	792	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0.0254	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0761	FALSE	462	80	0	856	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	5	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1792	31	0	0.21	0.038	0.0634	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.21	0.1014	FALSE	216	209	16	281	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	1	MT-ND4	1285	chrM:11044:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	10811	0	0	1	0.0507	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0634	FALSE	231	205	14	283	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A5--MT-ND1	4	1	SLC7A5	13719	chr16:87864490:-	MT-ND1	17596	chrM:3322:+	INCL_NON_REF_SPLICE	YES	1318	0	0	1	0.0507	0.0127	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0634	FALSE	0	0	0	11	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0507	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSH1--LINC00441	4	0	SSH1	13914	chr12:109198832:-	LINC00441	30945	chr13:48876628:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0507	0	SSH1->chr12:109176466-109251366:-,slingshot_protein_phosphatase_1,LINC00441->chr13:48870649-48877797:-,long_intergenic_non-protein_coding_RNA_441	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	3	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	NO	4	0	0.6	1	0.038	0.038	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.076	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TL1--MT-RNR2	3	3	MT-TL1	1002	chrM:3231:+	MT-RNR2	5023	chrM:2618:+	INCL_NON_REF_SPLICE	YES	0	971	1	0.01	0.038	0.038	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.076	FALSE	7	521	16	32	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DARS2--RP11-280O1.2	3	2	DARS2	17557	chr1:173823043:+	RP11-280O1.2	26327	chr1:165543325:-	ONLY_REF_SPLICE	YES	87	0	0.05	1	0.038	0.0254	DARS2->aspartyl-tRNA_synthetase_2,_mitochondrial,chr1:173793641-173827684:+,RP11-280O1.2->chr1:165446078-165551392:-	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	2	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	10	0	0.33	1	0.038	0.0254	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.0634	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	2	MT-CO3	1181	chrM:9387:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	10	0	0.33	1	0.038	0.0254	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.0634	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	9332	48	0	0.08	0.038	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.0507	FALSE	231	204	14	283	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM173B--CTNND2	3	0	FAM173B	6252	chr5:10235323:-	CTNND2	37457	chr5:10992789:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.038	0	FAM173B->chr5:10226442-10250009:-,family_with_sequence_similarity_173_member_B,CTNND2->Oncogene{Bushman},catenin_delta_2,chr5:10971952-11904155:-	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.038	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1024	chrM:9230:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.038	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1158	chrM:9364:+	MT-ATP6	5461	chrM:9203:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.038	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.038	FALSE	189	492	56	216	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.038	FALSE	231	205	14	283	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	3	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.038	FALSE	0	0	0	189	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0.038	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0634	FALSE	407	2205	196	549	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DARS2--RP11-280O1.2	2	2	DARS2	17557	chr1:173823043:+	RP11-280O1.2	35518	chr1:165470864:-	ONLY_REF_SPLICE	YES	87	1	0.04	0.8	0.0254	0.0254	DARS2->aspartyl-tRNA_synthetase_2,_mitochondrial,chr1:173793641-173827684:+,RP11-280O1.2->chr1:165446078-165551392:-	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.8	0.0508	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	6	IGH@	94754	chr14:106330024:-	WHSC1	145147	chr4:1932353:+	ONLY_REF_SPLICE	YES	2	535	0.78	0.01	0.0127	0.0761	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.78	0.0888	FALSE	0	0	0	3	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf131--NBPF10	2	1	C1orf131	8315	chr1:231361217:-	NBPF10	15329	chr1:145293371:+	ONLY_REF_SPLICE	YES	25	8	0.11	0.27	0.0254	0.0127	C1orf131->chr1:231359509-231376933:-,chromosome_1_open_reading_frame_131,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.27	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLIC1--RPL7	2	1	CLIC1	4985	chr6:31701613:-	RPL7	14663	chr8:74203896:-	ONLY_REF_SPLICE	YES	1143	4321	0	0	0.0254	0.0127	CLIC1->chloride_intracellular_channel_1,chr6:31698358-31707540:-,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0381	FALSE	0	0	0	12	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAT1--RHBDD1	1	5	STAT1	2994	chr2:191878744:-	RHBDD1	42642	chr2:227778924:+	ONLY_REF_SPLICE	YES	23	28	0.21	0.18	0.0127	0.0634	STAT1->chr2:191829084-191885686:-,signal_transducer_and_activator_of_transcription_1,RHBDD1->chr2:227700297-227863931:+,rhomboid_domain_containing_1	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.21	0.0761	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTF3C3--EXOSC1	2	0	GTF3C3	16901	chr2:197638393:-	EXOSC1	32319	chr10:99198460:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	GTF3C3->chr2:197627756-197664449:-,general_transcription_factor_IIIC_subunit_3,EXOSC1->chr10:99195899-99205774:-,exosome_component_1	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIATL1--RP11-307E17.8	2	0	HIATL1	4664	chr9:97200810:+	RP11-307E17.8	20815	chr9:97121767:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	GTEx_FI:{Small_Intestine=[count:1=pct:1.8],Skin=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:+:[13603],HIATL1->chr9:97136833-97223324:+,RP11-307E17.8->chr9:97094758-97123230:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	1	0	5	1	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDIA6--TXNDC5	2	0	PDIA6	10335	chr2:10942625:-	TXNDC5	35187	chr6:7884721:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	HGNC_GENEFAM,PROTCLUST,PDIA6->chr2:10923517-10978103:-,protein_disulfide_isomerase_family_A_member_6,TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R37--B2M	2	0	PPP1R37	3132	chr19:45596785:+	B2M	20982	chr15:45007621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	PPP1R37->chr19:45594654-45651335:+,protein_phosphatase_1_regulatory_subunit_37,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0127	0.0507	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0634	FALSE	467	2173	244	435	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A44--BIRC2	2	0	SLC25A44	1159	chr1:156164038:+	BIRC2	19000	chr11:102233627:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM18--CTDP1	2	0	TMEM18	1151	chr2:677289:-	CTDP1	28532	chr18:77496355:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	TMEM18->chr2:667335-677439:-,transmembrane_protein_18,CTDP1->CTD_phosphatase_subunit_1,chr18:77439801-77514510:+	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--MAEA	2	0	UVSSA	7499	chr4:1349033:+	MAEA	26629	chr4:1305767:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	GTEx_FI:{Blood=[count:5=pct:2.9],Skin=[count:4=pct:1.3],Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:1=pct:0.8],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[7119],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	2	0	0	5	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF268--RNF6	1	4	ZNF268	6809	chr12:133758616:+	RNF6	29208	chr13:26706589:-	ONLY_REF_SPLICE	NO	81	0	0.06	1	0.0127	0.0507	ZNF268->chr12:133707570-133783698:+,zinc_finger_protein_268,RNF6->chr13:26706253-26796791:-,ring_finger_protein_6	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ1A--RP11-1103G16.1	1	1	BAZ1A	24866	chr14:35240717:-	RP11-1103G16.1	47223	chr14:30919898:-	ONLY_REF_SPLICE	YES	53	0	0.04	1	0.0127	0.0127	BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,RP11-1103G16.1->chr14:30907198-31042835:-	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELAVL4--FAF1	1	1	ELAVL4	9432	chr1:50642864:+	FAF1	25366	chr1:51267349:-	ONLY_REF_SPLICE	YES	0	20	1	0.09	0.0127	0.0127	{Klijn_CCL:Lymphoid=1},ELAVL4->ELAV_like_neuron-specific_RNA_binding_protein_4,chr1:50513686-50669458:+,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RELN--HP1BP3	1	1	RELN	34620	chr7:103214539:-	HP1BP3	82560	chr1:21100103:-	ONLY_REF_SPLICE	NO	52	408	0.04	0	0.0127	0.0127	RELN->chr7:103112231-103629963:-,reelin,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000419
KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-349A22.5--PSMA3	1	1	RP11-349A22.5	10690	chr14:58740697:-	PSMA3	22204	chr14:58718842:+	ONLY_REF_SPLICE	YES	12	486	0.14	0	0.0127	0.0127	NEIGHBORS_OVERLAP:-:+:[6647],RP11-349A22.5->chr14:58732083-58764852:-,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.14	0.0254	FALSE	0	0	0	3	0	FALSE	ACH-000419
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	149	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.5111	0.3245	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.8356	TRUE	508	994	45	981	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	75	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	159	2	0.33	0.97	0.7606	0.0203	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.97	0.7809	TRUE	519	3926	326	965	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF292--GJB7	54	29	ZNF292	13472	chr6:87953329:+	GJB7	33309	chr6:87994657:-	ONLY_REF_SPLICE	YES	20	0	0.81	1	0.5477	0.2941	LOCAL_INVERSION:+:-:[18782],ZNF292->chr6:87862551-87973914:+,zinc_finger_protein_292,GJB7->chr6:87992696-88038996:-,gap_junction_protein_beta_7	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.8418	TRUE	0	0	0	1	0	TRUE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	54	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5477	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5477	TRUE	0	0	0	518	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUZ12P--CRLF3	45	6	SUZ12P	11951	chr17:29096983:+	CRLF3	36039	chr17:29100515:-	ONLY_REF_SPLICE	YES	5	1	0.91	0.98	0.4564	0.0609	NEIGHBORS_OVERLAP:+:-:[21520],SUZ12P->chr17:29036317-29117926:+,CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.98	0.5173	FALSE	11	30	1	7	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	148	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	6	0	0.96	1	0.0304	1.501	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	1.5314	FALSE	344	826	44	306	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	38	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3854	0.0304	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4158	FALSE	462	80	0	856	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	37	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3752	0.0304	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4056	FALSE	462	80	0	856	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	105	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.0609	1.0649	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	1.1258	FALSE	344	821	44	306	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	30	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3043	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3043	FALSE	499	1288	110	792	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	30	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3043	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3043	TRUE	0	0	0	434	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	98	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	4	0	0.96	1	0.0304	0.9939	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	1.0243	FALSE	344	826	44	306	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUZ12P--CRLF3	24	14	SUZ12P	11951	chr17:29096983:+	CRLF3	35192	chr17:29101362:-	ONLY_REF_SPLICE	YES	5	1	0.88	0.97	0.2434	0.142	NEIGHBORS_OVERLAP:+:-:[21520],SUZ12P->chr17:29036317-29117926:+,CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.97	0.3854	FALSE	11	30	1	7	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	92	MT-ND4	1298	chrM:11057:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	15	0	0.86	1	0.0406	0.933	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.9736	FALSE	344	827	44	306	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	77	MT-ND4	1503	chrM:11262:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	168	0	0.33	1	0.0406	0.7809	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.8215	FALSE	344	827	44	306	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	15	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1521	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1521	FALSE	499	1288	110	792	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	47	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.0304	0.4767	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.5071	FALSE	344	826	44	306	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1DP3--FRY	14	2	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	0	2	1	0.89	0.142	0.0203	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1623	FALSE	20	24	2	21	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	14	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.142	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.142	TRUE	0	0	0	100	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	40	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.0406	0.4057	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.4463	FALSE	344	821	44	306	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	20	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.071	0.2028	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.2738	FALSE	344	821	44	306	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	36	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0304	0.3651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.3955	FALSE	344	821	44	306	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	11	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1116	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1116	TRUE	0	0	0	518	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	12	0	0.61	1	0.0609	0.1318	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	1	0.1927	FALSE	344	827	44	306	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.0811	0.0406	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.1217	FALSE	499	1288	110	792	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	19	MT-ND4	1248	chrM:11007:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	7	0	0.77	1	0.0406	0.1927	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.2333	FALSE	344	827	44	306	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	19	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.0406	0.1927	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.2333	FALSE	344	826	44	306	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	7	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	36	38	0.2	0.19	0.071	0.0203	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.2	0.0913	TRUE	267	562	48	632	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	17	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	5	0	0.8	1	0.0304	0.1724	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.2028	FALSE	344	826	44	306	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	16	MT-CO3	1020	chrM:9226:+	MT-ATP6	5185	chrM:8927:+	INCL_NON_REF_SPLICE	YES	0	45	1	0.3	0.0304	0.1623	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.1927	FALSE	189	492	56	216	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.071	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.071	FALSE	189	492	56	216	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	6	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0507	0.0609	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.1116	FALSE	499	1288	110	792	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	8	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	5	1	0.71	0.92	0.0406	0.0811	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.92	0.1217	FALSE	189	492	56	216	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.58	1	0.0507	0.0203	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	1	0.071	FALSE	189	492	56	216	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	1	MT-ND4	1038	chrM:10797:+	MT-ND4L	5644	chrM:10735:+	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.0406	0.0101	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.0507	FALSE	344	821	44	306	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	34	1100	0.13	0	0.0406	0.0101	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.13	0.0507	FALSE	0	0	0	434	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0406	FALSE	344	821	44	306	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	2	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	7	0	0.42	1	0.0304	0.0203	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.0507	FALSE	189	492	56	216	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	34	1080	0.11	0	0.0304	0.0101	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.11	0.0405	FALSE	0	0	0	434	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--GDI2	2	1	FAM208B	2441	chr10:5734881:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	NO	17	651	0.15	0	0.0203	0.0101	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.15	0.0304	FALSE	0	0	0	1	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DTYMK--ATG4B	2	0	DTYMK	1338	chr2:242626069:-	ATG4B	21075	chr2:242606060:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[1885],DTYMK->chr2:242615157-242626406:-,deoxythymidylate_kinase,ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	5	0	TRUE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FUBP1--IVNS1ABP	2	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	1	4	0	16	0	TRUE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HCLS1--USP10	2	0	HCLS1	1108	chr3:121379667:-	USP10	34403	chr16:84801799:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	HCLS1->chr3:121350246-121379774:-,hematopoietic_cell-specific_Lyn_substrate_1,USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0203	TRUE	62	24	1	171	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF292--GJB7	1	3	ZNF292	8965	chr6:87928449:+	GJB7	33309	chr6:87994657:-	ONLY_REF_SPLICE	YES	58	0	0.06	1	0.0101	0.0304	LOCAL_INVERSION:+:-:[18782],ZNF292->chr6:87862551-87973914:+,zinc_finger_protein_292,GJB7->chr6:87992696-88038996:-,gap_junction_protein_beta_7	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0405	TRUE	0	0	0	1	0	TRUE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	D2HGDH--ATG4B	1	1	D2HGDH	13178	chr2:242695429:+	ATG4B	20447	chr2:242590425:+	ONLY_REF_SPLICE	YES	39	2	0.05	0.5	0.0101	0.0101	LOCAL_REARRANGEMENT:+:[60722],D2HGDH->D-2-hydroxyglutarate_dehydrogenase,chr2:242673994-242708231:+,ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.5	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1DP3--FRY	1	1	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	NO	10	2	0.17	0.5	0.0101	0.0101	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.5	0.0202	FALSE	18	26	2	21	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNL3--NEK4	1	1	GNL3	3816	chr3:52721631:+	NEK4	26428	chr3:52775515:-	ONLY_REF_SPLICE	YES	373	44	0.01	0.04	0.0101	0.0101	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[16292],GNL3->G_protein_nucleolar_3,chr3:52715172-52728508:+,NEK4->NIMA_related_kinase_4,chr3:52744800-52804965:-	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0202	FALSE	0	0	0	3	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--EZH2	1	1	IGLL5	1480	chr22:23230439:+	EZH2	21519	chr7:148512638:-	ONLY_REF_SPLICE	YES	233	189	0.01	0.01	0.0101	0.0101	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0202	FALSE	0	0	0	2	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTG1--TUBGCP2	1	1	MTG1	7895	chr10:135216277:+	TUBGCP2	16827	chr10:135116484:-	ONLY_REF_SPLICE	NO	116	6	0.02	0.25	0.0101	0.0101	LOCAL_INVERSION:+:-:[81757],MTG1->chr10:135207598-135234811:+,mitochondrial_ribosome_associated_GTPase_1,TUBGCP2->chr10:135093135-135125841:-,tubulin_gamma_complex_associated_protein_2	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.25	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNRPN--UBE3A	1	1	SNRPN	9029	chr15:25207356:+	UBE3A	34871	chr15:25585375:-	ONLY_REF_SPLICE	YES	246	86	0.01	0.02	0.0101	0.0101	SNRPN->chr15:25068794-25223870:+,small_nuclear_ribonucleoprotein_polypeptide_N,UBE3A->Oncogene{Bushman},chr15:25582381-25684128:-,ubiquitin_protein_ligase_E3A	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000707
P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STYXL1--MDH2	1	1	STYXL1	1193	chr7:75677130:-	MDH2	18521	chr7:75686728:+	ONLY_REF_SPLICE	YES	38	652	0.05	0	0.0101	0.0101	LOCAL_INVERSION:-:+:[47],STYXL1->chr7:75625656-75677322:-,serine/threonine/tyrosine_interacting-like_1,MDH2->chr7:75677369-75696826:+,malate_dehydrogenase_2	P3HR1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000707
SNU1079_BILIARY_TRACT	MT-TA--MT-TN	155	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4839	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1079_BILIARY_TRACT	1	1	1.4839	FALSE	369	2501	205	193	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-TA--MT-TC	93	17	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8903	0.1627	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1079_BILIARY_TRACT	1	1	1.053	FALSE	462	80	0	856	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	TIMM23B--LINC00843	79	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7563	0.1723	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU1079_BILIARY_TRACT	0.99	1	0.9286	TRUE	508	994	45	981	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	UVRAG--RP11-693N9.2	76	26	UVRAG	1358	chr11:75526569:+	RP11-693N9.2	37693	chr11:104776284:-	ONLY_REF_SPLICE	YES	19	19	0.84	0.84	0.7276	0.2489	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,RP11-693N9.2->chr11:104772276-104789800:-	SNU1079_BILIARY_TRACT	0.84	0.84	0.9765	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	ITPK1--MIPOL1	74	24	ITPK1	8860	chr14:93460225:-	MIPOL1	57691	chr14:38016110:+	ONLY_REF_SPLICE	YES	113	13	0.46	0.88	0.7084	0.2298	ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	SNU1079_BILIARY_TRACT	0.46	0.88	0.9382	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	6	243	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	34	0	0.88	1	0.0574	2.3263	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.88	1	2.3837	FALSE	344	827	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	5	242	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	27	0	0.9	1	0.0479	2.3168	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.9	1	2.3647	FALSE	344	826	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	3	249	MT-ND4	1738	chrM:11497:+	MT-ND4L	5511	chrM:10602:+	INCL_NON_REF_SPLICE	YES	5983	0	0.04	1	0.0287	2.3838	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.04	1	2.4125	FALSE	344	827	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	GTF2A1--SERPINA12	58	25	GTF2A1	2991	chr14:81682757:-	SERPINA12	21440	chr14:94982491:-	ONLY_REF_SPLICE	YES	22	0	0.79	1	0.5553	0.2393	GTF2A1->Oncogene{Bushman},chr14:81641796-81687721:-,general_transcription_factor_IIA_subunit_1,SERPINA12->chr14:94953611-94984181:-,serpin_family_A_member_12	SNU1079_BILIARY_TRACT	0.79	1	0.7946	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	3	206	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	12	1	0.95	1	0.0287	1.9721	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.95	1	2.0008	FALSE	344	826	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	3	205	MT-ND4	1079	chrM:10838:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	10	1	0.95	1	0.0287	1.9626	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.95	1	1.9913	FALSE	344	821	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	6	180	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	10	1	0.95	0.99	0.0574	1.7232	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.95	0.99	1.7806	FALSE	344	821	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	7	174	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	14	0	0.93	1	0.067	1.6658	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.93	1	1.7328	FALSE	344	826	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	TIMM23--RP11-464F9.1	49	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	156	3	0.25	0.94	0.4691	0.0191	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU1079_BILIARY_TRACT	0.25	0.94	0.4882	TRUE	519	3926	326	965	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	UVRAG--RP11-693N9.2	37	45	UVRAG	1358	chr11:75526569:+	RP11-693N9.2	34242	chr11:104779735:-	ONLY_REF_SPLICE	YES	19	2	0.81	0.98	0.3542	0.4308	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,RP11-693N9.2->chr11:104772276-104789800:-	SNU1079_BILIARY_TRACT	0.81	0.98	0.785	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	44	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	16527	7	0	0.87	0.4212	0.0096	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.87	0.4308	FALSE	230	193	14	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-TA--MT-TN	20	87	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1915	0.8329	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1079_BILIARY_TRACT	1	1	1.0244	FALSE	369	2501	205	193	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	3	152	MT-ND4	1060	chrM:10819:+	MT-ND4L	5532	chrM:10623:+	INCL_NON_REF_SPLICE	YES	10	1	0.94	0.99	0.0287	1.4552	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.94	0.99	1.4839	FALSE	344	821	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	PCNX--SOS2	34	25	PCNX	34724	chr14:71524441:+	SOS2	80866	chr14:50600957:-	ONLY_REF_SPLICE	YES	15	10	0.8	0.86	0.3255	0.2393	PCNX->chr14:71374122-71582099:+,SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-	SNU1079_BILIARY_TRACT	0.8	0.86	0.5648	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	25	56	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	16134	0	0	1	0.2393	0.5361	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0	1	0.7754	FALSE	328	800	43	304	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	RP11-950C14.7--CTD-2184C24.2	33	23	RP11-950C14.7	1208	chr14:75594063:+	CTD-2184C24.2	7980	chr14:60709588:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3159	0.2202	RP11-950C14.7->chr14:75593856-75603633:+,CTD-2184C24.2->chr14:60706839-60715483:-	SNU1079_BILIARY_TRACT	1	1	0.5361	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	RP4-565E6.1--HYDIN	36	10	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	7	1	0.87	0.3446	0.0957	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SNU1079_BILIARY_TRACT	0.87	1	0.4403	TRUE	456	1387	91	133	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	3	127	MT-ND4	1756	chrM:11515:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	6869	0	0.02	1	0.0287	1.2158	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.02	1	1.2445	FALSE	344	827	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-TA--MT-TN	22	48	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2106	0.4595	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1079_BILIARY_TRACT	1	1	0.6701	FALSE	369	2501	205	193	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-TA--MT-TN	27	19	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2585	0.1819	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1079_BILIARY_TRACT	1	1	0.4404	FALSE	369	2501	205	193	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND6--MT-TE	29	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2776	0.0383	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1079_BILIARY_TRACT	1	1	0.3159	FALSE	499	1288	110	792	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	RP11-123O10.4--GRIP1	28	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2681	0.0574	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU1079_BILIARY_TRACT	1	1	0.3255	FALSE	416	2512	207	587	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-TA--MT-TN	12	66	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1149	0.6318	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1079_BILIARY_TRACT	1	1	0.7467	FALSE	369	2501	205	193	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	AP003900.6--AC011718.2	26	4	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.2489	0.0383	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU1079_BILIARY_TRACT	0.94	1	0.2872	TRUE	0	5	0	45	5	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	6	83	MT-ND4	1779	chrM:11538:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	8252	0	0.01	1	0.0574	0.7946	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.01	1	0.852	FALSE	344	827	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	RP11-950C14.7--CTD-2184C24.2	23	15	RP11-950C14.7	1208	chr14:75594063:+	CTD-2184C24.2	10396	chr14:60707172:-	ONLY_REF_SPLICE	YES	0	11	1	0.78	0.2202	0.1436	RP11-950C14.7->chr14:75593856-75603633:+,CTD-2184C24.2->chr14:60706839-60715483:-	SNU1079_BILIARY_TRACT	0.78	1	0.3638	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	MT-TA--MT-TN	24	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2298	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1079_BILIARY_TRACT	1	1	0.2298	FALSE	369	2501	205	193	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	ITPK1--MIPOL1	16	31	ITPK1	8860	chr14:93460225:-	MIPOL1	46849	chr14:37969113:+	ONLY_REF_SPLICE	YES	113	16	0.29	0.75	0.1532	0.2968	ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	SNU1079_BILIARY_TRACT	0.29	0.75	0.45	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	4	77	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	10	0	0.89	1	0.0383	0.7372	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.89	1	0.7755	FALSE	344	821	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	21	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19671	11	0	0.72	0.201	0.067	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.72	0.268	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-TA--MT-TC	19	15	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1819	0.1436	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1079_BILIARY_TRACT	1	1	0.3255	FALSE	462	80	0	856	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	3	78	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0287	0.7467	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.98	1	0.7754	FALSE	344	821	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	19	10	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19274	2	0	0.94	0.1819	0.0957	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.94	0.2776	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-TA--MT-TN	12	31	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1149	0.2968	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1079_BILIARY_TRACT	1	1	0.4117	FALSE	369	2501	205	193	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-TA--MT-TN	6	52	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0.4978	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1079_BILIARY_TRACT	1	1	0.5552	FALSE	369	2501	205	193	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	5	54	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	912	0	0.06	1	0.0479	0.517	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.06	1	0.5649	FALSE	344	827	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	AEBP2--SOX5	18	0	AEBP2	5542	chr12:19626289:+	SOX5	27367	chr12:23908658:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1723	0	AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU1079_BILIARY_TRACT	1	1	0.1723	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	ITPR2--RP11-788M5.3	17	4	ITPR2	2580	chr12:26943090:-	RP11-788M5.3	69050	chr11:101029890:+	ONLY_REF_SPLICE	YES	7	0	0.75	1	0.1627	0.0383	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,RP11-788M5.3->chr11:101018881-101080322:+	SNU1079_BILIARY_TRACT	0.75	1	0.201	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	14	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	18963	210	0	0.11	0.134	0.1149	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.11	0.2489	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-TA--MT-TN	6	44	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0.4212	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1079_BILIARY_TRACT	1	1	0.4786	FALSE	369	2501	205	193	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND6--MT-TE	13	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.1245	0.1436	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1079_BILIARY_TRACT	0.93	1	0.2681	FALSE	499	1288	110	792	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	3	53	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	30	0	0.65	1	0.0287	0.5074	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.65	1	0.5361	FALSE	344	826	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	3	50	MT-ND4	1279	chrM:11038:+	MT-ND4L	5656	chrM:10747:+	INCL_NON_REF_SPLICE	YES	54	0	0.5	1	0.0287	0.4787	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.5	1	0.5074	FALSE	344	827	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	15	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18616	11	0	0.59	0.1436	0.0096	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.59	0.1532	FALSE	231	205	14	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	12	12	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18423	73	0	0.25	0.1149	0.1149	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.25	0.2298	FALSE	231	215	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND6--MT-TE	14	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.134	0.0383	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1079_BILIARY_TRACT	1	1	0.1723	FALSE	499	1288	110	792	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	6	34	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	32	0	0.56	1	0.0574	0.3255	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.56	1	0.3829	FALSE	344	826	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	11	11	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	18891	0	0	1	0.1053	0.1053	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	1	0.2106	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	11	8	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19267	73	0	0.21	0.1053	0.0766	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.21	0.1819	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND6--MT-TE	4	36	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0.3446	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1079_BILIARY_TRACT	1	1	0.3829	FALSE	499	1288	110	792	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	GTF2A1--SERPINA12	6	26	GTF2A1	4058	chr14:81676214:-	SERPINA12	21440	chr14:94982491:-	ONLY_REF_SPLICE	YES	25	0	0.56	1	0.0574	0.2489	GTF2A1->Oncogene{Bushman},chr14:81641796-81687721:-,general_transcription_factor_IIA_subunit_1,SERPINA12->chr14:94953611-94984181:-,serpin_family_A_member_12	SNU1079_BILIARY_TRACT	0.56	1	0.3063	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	4	34	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	53	0	0.42	1	0.0383	0.3255	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.42	1	0.3638	FALSE	344	827	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND6--MT-TE	8	18	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0766	0.1723	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1079_BILIARY_TRACT	1	1	0.2489	FALSE	499	1288	110	792	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	HEATR5A--SLC35F4	11	5	HEATR5A	27652	chr14:31795369:-	SLC35F4	60865	chr14:58048151:-	ONLY_REF_SPLICE	YES	1	1	0.94	0.94	0.1053	0.0479	HEATR5A->HEAT_repeat_containing_5A,chr14:31760994-31889788:-,SLC35F4->chr14:58030640-58448912:-,solute_carrier_family_35_member_F4	SNU1079_BILIARY_TRACT	0.94	0.94	0.1532	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	9	13	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3277	73	0.01	0.23	0.0862	0.1245	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0.01	0.23	0.2107	FALSE	216	209	16	281	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND3--MT-ATP8	12	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1149	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	1	1	0.1149	FALSE	351	233	23	137	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	11	4	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	21846	1	0	0.94	0.1053	0.0383	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.94	0.1436	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	RP11-680G10.1--GSE1	11	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	17	1	0.47	0.1053	0.0383	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1079_BILIARY_TRACT	0.47	1	0.1436	TRUE	458	1351	185	561	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	3	34	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	31	0	0.54	1	0.0287	0.3255	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.54	1	0.3542	FALSE	344	826	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	6	21	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	1	1	0.96	0.96	0.0574	0.201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0.96	0.96	0.2584	FALSE	209	205	15	279	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	9	9	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	19656	2	0	0.9	0.0862	0.0862	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.9	0.1724	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	3	33	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	22	0	0.62	1	0.0287	0.3159	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.62	1	0.3446	FALSE	344	826	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	NRIP1--AF127936.7	10	5	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.75	1	0.0957	0.0479	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1079_BILIARY_TRACT	0.75	1	0.1436	FALSE	292	1546	117	613	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	RP11-344E13.3--UBBP4	7	17	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	42	1	0.36	0.96	0.067	0.1627	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	SNU1079_BILIARY_TRACT	0.36	0.96	0.2297	TRUE	23	13	0	54	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	8	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18963	73	0	0.22	0.0766	0.1149	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.22	0.1915	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	RP11-950C14.7--CTD-2184C24.2	7	14	RP11-950C14.7	1110	chr14:75593965:+	CTD-2184C24.2	7980	chr14:60709588:-	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.067	0.134	RP11-950C14.7->chr14:75593856-75603633:+,CTD-2184C24.2->chr14:60706839-60715483:-	SNU1079_BILIARY_TRACT	0.81	1	0.201	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	10	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16403	11	0	0.5	0.0957	0.0096	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.5	0.1053	FALSE	230	198	14	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	10	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16363	11	0	0.5	0.0957	0.0096	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.5	0.1053	FALSE	230	193	14	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	7	13	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	19734	0	0	1	0.067	0.1245	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	1	0.1915	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	RP11-680G10.1--GSE1	10	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0957	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1079_BILIARY_TRACT	1	1	0.0957	TRUE	465	1949	224	605	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND6--MT-TE	4	23	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0383	0.2202	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1079_BILIARY_TRACT	0.93	1	0.2585	FALSE	499	1288	110	792	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	6	14	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20467	2	0	0.91	0.0574	0.134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.91	0.1914	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	8	5	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	19646	1003	0	0.01	0.0766	0.0479	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.01	0.1245	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	ITPR2--RP11-788M5.3	8	4	ITPR2	2580	chr12:26943090:-	RP11-788M5.3	67960	chr11:101018874:+	INCL_NON_REF_SPLICE	YES	7	0	0.63	1	0.0766	0.0383	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,RP11-788M5.3->chr11:101018881-101080322:+	SNU1079_BILIARY_TRACT	0.63	1	0.1149	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	APP--MT-ND2	8	3	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	2128	7292	0.01	0	0.0766	0.0287	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU1079_BILIARY_TRACT	0	0.01	0.1053	FALSE	0	1	0	51	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND6--MT-TE	3	23	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0287	0.2202	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1079_BILIARY_TRACT	0.93	1	0.2489	FALSE	499	1288	110	792	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND6--MT-TE	5	15	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.0479	0.1436	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1079_BILIARY_TRACT	0.91	1	0.1915	FALSE	499	1288	110	792	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	3	22	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	7081	0	0	1	0.0287	0.2106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	1	0.2393	FALSE	222	212	16	282	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	8	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16617	73	0	0.11	0.0766	0.0096	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.11	0.0862	FALSE	230	198	14	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	3	21	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	18560	0	0	1	0.0287	0.201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	1	0.2297	FALSE	231	215	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-TA--MT-TC	8	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0766	0.0096	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1079_BILIARY_TRACT	1	1	0.0862	FALSE	462	80	0	856	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-TA--MT-TN	8	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0766	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1079_BILIARY_TRACT	1	1	0.0766	FALSE	369	2501	205	193	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	RP1-34H18.1--NAV3	8	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0766	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SNU1079_BILIARY_TRACT	1	1	0.0766	TRUE	254	575	65	124	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	RALGPS2--FAM20B	7	3	RALGPS2	8945	chr1:178802685:+	FAM20B	31065	chr1:179012850:+	ONLY_REF_SPLICE	YES	25	2	0.29	0.83	0.067	0.0287	RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+,FAM20B->chr1:178994939-179045697:+,family_with_sequence_similarity_20_member_B	SNU1079_BILIARY_TRACT	0.29	0.83	0.0957	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	RP11-96H19.1--RP11-446N19.1	7	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.067	0.0287	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1079_BILIARY_TRACT	0.91	1	0.0957	FALSE	515	4851	409	746	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	6	6	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	19752	1591	0	0.01	0.0574	0.0574	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.01	0.1148	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	6	5	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	19671	941	0	0.01	0.0574	0.0479	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.01	0.1053	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	3	17	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1659	2	0.01	0.91	0.0287	0.1627	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0.01	0.91	0.1914	FALSE	216	209	16	281	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	5	9	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	19413	1	0	0.93	0.0479	0.0862	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.93	0.1341	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	3	17	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	59	0	0.25	1	0.0287	0.1627	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.25	1	0.1914	FALSE	344	827	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	7	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0.0096	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	1	1	0.0766	FALSE	344	821	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	3	17	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	59	0	0.25	1	0.0287	0.1627	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.25	1	0.1914	FALSE	344	827	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	5	8	MT-ND4	1824	chrM:11583:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19249	11	0	0.54	0.0479	0.0766	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.54	0.1245	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	4	12	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	19073	0	0	1	0.0383	0.1149	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	1	0.1532	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-TA--MT-TN	7	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1079_BILIARY_TRACT	1	1	0.067	FALSE	369	2501	205	193	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-TA--MT-TN	7	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1079_BILIARY_TRACT	1	1	0.067	FALSE	369	2501	205	193	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	3	14	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	20588	2	0	0.89	0.0287	0.134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.89	0.1627	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	6	2	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	16738	0	0	1	0.0574	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	1	0.0765	FALSE	231	204	14	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	3	14	MT-ND4	1875	chrM:11634:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	20965	2	0	0.89	0.0287	0.134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.89	0.1627	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	5	5	MT-ND4	1645	chrM:11404:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21110	73	0	0.12	0.0479	0.0479	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.12	0.0958	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	3	13	MT-ND4	2089	chrM:11848:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	15576	73	0	0.18	0.0287	0.1245	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.18	0.1532	FALSE	231	215	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-TA--MT-TN	3	13	MT-TA	1071	chrM:5585:-	MT-TN	4113	chrM:5686:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.1245	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1079_BILIARY_TRACT	1	1	0.1532	FALSE	369	2501	205	193	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	SLC1A5--MT-ND4L	6	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	216	0	0.03	1	0.0574	0.0096	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.03	1	0.067	FALSE	0	0	0	189	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	CTD-2337A12.1--CAST	6	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0574	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU1079_BILIARY_TRACT	1	1	0.0574	TRUE	347	1186	183	220	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	4	8	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	20441	880	0	0.01	0.0383	0.0766	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.01	0.1149	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	6	0	MT-ND4	1280	chrM:11039:+	MT-ATP8	5510	chrM:8497:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	1	1	0.0574	FALSE	231	205	14	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	NRIP1--AF127936.7	4	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	37	0	0.24	1	0.0383	0.0766	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1079_BILIARY_TRACT	0.24	1	0.1149	FALSE	164	806	69	479	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	FAM211A--MT-CO3	5	3	FAM211A	8450	chr17:16344949:-	MT-CO3	11714	chrM:9412:+	INCL_NON_REF_SPLICE	YES	0	16389	1	0	0.0479	0.0287	FAM211A->chr17:16344891-16395467:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU1079_BILIARY_TRACT	0	1	0.0766	FALSE	0	0	0	7	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	3	11	MT-ND4	2277	chrM:12036:+	MT-ATP8	5512	chrM:8499:+	INCL_NON_REF_SPLICE	YES	213	1513	0.06	0.01	0.0287	0.1053	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0.01	0.06	0.134	FALSE	216	209	16	281	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	5	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	19267	2016	0	0	0.0479	0.0287	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0	0.0766	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	PCNX--SOS2	3	11	PCNX	34724	chr14:71524441:+	SOS2	81983	chr14:50597480:-	ONLY_REF_SPLICE	YES	15	13	0.48	0.52	0.0287	0.1053	PCNX->chr14:71374122-71582099:+,SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-	SNU1079_BILIARY_TRACT	0.48	0.52	0.134	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	5	2	MT-ND4	1452	chrM:11211:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	21465	11	0	0.39	0.0479	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.39	0.067	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	5	2	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	16501	0	0	1	0.0479	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	1	0.067	FALSE	230	197	14	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND5--MT-ND1	4	5	MT-ND5	2730	chrM:14066:+	MT-ND1	6031	chrM:3525:+	INCL_NON_REF_SPLICE	YES	10	7118	0.47	0	0.0383	0.0479	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[8075],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU1079_BILIARY_TRACT	0	0.47	0.0862	FALSE	7	3	0	4	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND3--MT-ATP8	5	0	MT-ND3	1060	chrM:10118:+	MT-ATP8	4489	chrM:8508:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	1	1	0.0479	FALSE	351	233	23	137	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND6--MT-TE	5	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1079_BILIARY_TRACT	1	1	0.0479	FALSE	499	1288	110	792	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1079_BILIARY_TRACT	1	1	0.0479	FALSE	499	1288	110	792	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-TA--MT-TN	5	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1079_BILIARY_TRACT	1	1	0.0479	FALSE	369	2501	205	193	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	TMEM132A--MT-ND4L	5	0	TMEM132A	12311	chr11:60703820:+	MT-ND4L	16124	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	TMEM132A->chr11:60691935-60704631:+,transmembrane_protein_132A,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	1	1	0.0479	FALSE	0	0	0	3	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	APP--MT-ND2	4	3	APP	11633	chr21:27394216:-	MT-ND2	33011	chrM:5305:+	INCL_NON_REF_SPLICE	YES	2091	8030	0	0	0.0383	0.0287	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU1079_BILIARY_TRACT	0	0	0.067	FALSE	0	1	0	51	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	4	3	MT-ND4	1500	chrM:11259:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	20800	2	0	0.78	0.0383	0.0287	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.78	0.067	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	4	2	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20285	2	0	0.75	0.0383	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.75	0.0574	FALSE	231	205	14	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	AC012506.3--AC016768.1	4	1	AC012506.3	2367	chr2:23580553:-	AC016768.1	6782	chr2:23313719:-	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.0383	0.0096	AC012506.3->chr2:23580387-23583247:-,AC016768.1->chr2:23240997-23421927:-	SNU1079_BILIARY_TRACT	0.71	1	0.0479	TRUE	0	7	2	1	7	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	ITPK1--MIPOL1	2	9	ITPK1	6705	chr14:93483021:-	MIPOL1	57691	chr14:38016110:+	ONLY_REF_SPLICE	YES	134	13	0.08	0.46	0.0191	0.0862	ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	SNU1079_BILIARY_TRACT	0.08	0.46	0.1053	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	4	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	16527	11	0	0.31	0.0383	0.0096	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.31	0.0479	FALSE	230	193	14	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	3	5	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	21154	0	0	1	0.0287	0.0479	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	1	0.0766	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	4	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	16860	2	0	0.71	0.0383	0.0096	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.71	0.0479	FALSE	231	204	14	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	SPCS2--FGF19	4	1	SPCS2	5521	chr11:74680744:+	FGF19	14079	chr11:69514344:-	ONLY_REF_SPLICE	YES	75	20	0.06	0.2	0.0383	0.0096	SPCS2->chr11:74660292-74690076:+,signal_peptidase_complex_subunit_2,FGF19->ArcherDX_panel,FoundationOne_panel,chr11:69513000-69519410:-,fibroblast_growth_factor_19	SNU1079_BILIARY_TRACT	0.06	0.2	0.0479	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND3--MT-ATP8	4	0	MT-ND3	1283	chrM:10341:+	MT-ATP8	4411	chrM:8430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	1	1	0.0383	FALSE	351	233	23	137	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	4	0	MT-ND4	1075	chrM:10834:+	MT-ATP8	5524	chrM:8511:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	1	1	0.0383	FALSE	230	192	14	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	3	4	MT-ND4	1311	chrM:11070:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	21196	0	0	1	0.0287	0.0383	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	1	0.067	FALSE	231	205	14	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	4	0	MT-ND4	1144	chrM:10903:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	1	1	0.0383	FALSE	230	193	14	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	CTD-2008L17.1--RP11-456O19.2	3	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0.0287	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SNU1079_BILIARY_TRACT	1	1	0.0574	FALSE	20	187	4	79	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	3	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20900	2	0	0.75	0.0287	0.0287	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.75	0.0574	FALSE	231	217	16	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ND4L	3	3	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	8	0	0.43	1	0.0287	0.0287	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1079_BILIARY_TRACT	0.43	1	0.0574	FALSE	344	821	44	306	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	NRIP1--AF127936.7	2	7	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.29	1	0.0191	0.067	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1079_BILIARY_TRACT	0.29	1	0.0861	FALSE	125	705	46	456	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0287	0.0287	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1079_BILIARY_TRACT	0.86	1	0.0574	FALSE	407	2205	196	549	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0287	0.0287	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1079_BILIARY_TRACT	0.75	1	0.0574	FALSE	467	2173	244	435	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	AP003900.6--AC011718.2	3	2	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	2	2	0.71	0.71	0.0287	0.0191	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU1079_BILIARY_TRACT	0.71	0.71	0.0478	TRUE	0	1	0	24	1	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20268	73	0	0.06	0.0287	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	0	0.06	0.0478	FALSE	231	205	14	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	TIMM23B--LINC00843	3	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0.0096	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU1079_BILIARY_TRACT	1	1	0.0383	TRUE	62	24	1	171	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	CMTM8--CMTM7	3	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	SNU1079_BILIARY_TRACT	1	1	0.0287	FALSE	118	557	29	88	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND3--MT-ATP8	3	0	MT-ND3	1053	chrM:10111:+	MT-ATP8	4482	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	1	1	0.0287	FALSE	351	233	23	137	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND3--MT-ATP8	3	0	MT-ND3	1290	chrM:10348:+	MT-ATP8	4418	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	1	1	0.0287	FALSE	351	233	23	137	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	1	1	0.0287	FALSE	231	204	14	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	MT-ND4--MT-ATP8	3	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5571	chrM:8558:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1079_BILIARY_TRACT	1	1	0.0287	FALSE	231	204	14	283	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	CTD-2008L17.1--RP11-456O19.2	2	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0191	0.0191	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SNU1079_BILIARY_TRACT	0.8	1	0.0382	FALSE	33	240	4	98	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	RP4-565E6.1--HYDIN	2	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	11	1	0.27	0.0191	0.0191	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SNU1079_BILIARY_TRACT	0.27	1	0.0382	TRUE	84	87	4	41	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	ITPR2--RP11-977P2.1	2	1	ITPR2	2580	chr12:26943090:-	RP11-977P2.1	69101	chr12:28975206:-	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0191	0.0096	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,RP11-977P2.1->chr12:28974908-28978764:-	SNU1079_BILIARY_TRACT	0.3	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	RCC1--SNX5	2	1	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	5	712	0.38	0	0.0191	0.0096	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	SNU1079_BILIARY_TRACT	0	0.38	0.0287	FALSE	0	5	0	11	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	AK7--RP11-966I7.1	2	0	AK7	6869	chr14:96887269:+	RP11-966I7.1	31966	chr14:29198762:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	AK7->adenylate_kinase_7,chr14:96858448-96955764:+,RP11-966I7.1->chr14:29198289-29234483:-	SNU1079_BILIARY_TRACT	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	FANCM--RAD51B	2	0	FANCM	24754	chr14:45658565:+	RAD51B	48925	chr14:68758601:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	FANCM->Fanconi_anemia_complementation_group_M,chr14:45605143-45670093:+,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	SNU1079_BILIARY_TRACT	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	RLF--PSMB2	2	0	RLF	1264	chr1:40627308:+	PSMB2	20944	chr1:36075009:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,PSMB2->chr1:36067185-36107445:-,proteasome_subunit_beta_2	SNU1079_BILIARY_TRACT	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	RP11-123O10.4--GRIP1	1	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0096	0.0383	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU1079_BILIARY_TRACT	1	1	0.0479	FALSE	93	270	15	244	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	RPS3--UBB	2	0	RPS3	2292	chr11:75111821:+	UBB	14087	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,UBB->chr17:16284112-16286059:+,ubiquitin_B	SNU1079_BILIARY_TRACT	1	1	0.0191	TRUE	0	0	0	6	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.67	1	0.0096	0.0287	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1079_BILIARY_TRACT	0.67	1	0.0383	FALSE	192	492	57	212	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0096	0.0287	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1079_BILIARY_TRACT	0.8	1	0.0383	FALSE	275	511	55	178	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	PCNX--SOS2	1	1	PCNX	25922	chr14:71502874:+	SOS2	80866	chr14:50600957:-	ONLY_REF_SPLICE	YES	32	10	0.06	0.17	0.0096	0.0096	PCNX->chr14:71374122-71582099:+,SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-	SNU1079_BILIARY_TRACT	0.06	0.17	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000209
SNU1079_BILIARY_TRACT	SH3TC2--HTR4	1	1	SH3TC2	30697	chr5:148334236:-	HTR4	35238	chr5:148056798:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0096	0.0096	GTEx_FI:{Skin=[count:4=pct:1.3],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2]},SH3TC2->SH3_domain_and_tetratricopeptide_repeats_2,chr5:148303202-148442726:-,HTR4->5-hydroxytryptamine_receptor_4,chr5:147830595-148056798:-	SNU1079_BILIARY_TRACT	1	1	0.0192	TRUE	6	2	0	1	0	FALSE	ACH-000209
SNU1079_BILIARY_TRACT	TTLL5--RP11-84C10.2	1	1	TTLL5	26208	chr14:76203950:+	RP11-84C10.2	56147	chr14:21387795:+	ONLY_REF_SPLICE	YES	7	3	0.22	0.4	0.0096	0.0096	TTLL5->chr14:76099968-76421421:+,tubulin_tyrosine_ligase_like_5,RP11-84C10.2->chr14:21387500-21388458:+	SNU1079_BILIARY_TRACT	0.22	0.4	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000209
SLR21_KIDNEY	TIMM23B--LINC00843	47	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.5229	0.2782	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SLR21_KIDNEY	0.99	1	0.8011	TRUE	508	994	45	981	0	FALSE	ACH-000016
SLR21_KIDNEY	MT-TA--MT-TC	51	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5674	0.0334	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR21_KIDNEY	1	1	0.6008	FALSE	462	80	0	856	0	FALSE	ACH-000016
SLR21_KIDNEY	HCG4P5--SPP1	35	58	HCG4P5	1476	chr6:29910369:-	SPP1	5041	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	17	0	0.85	1	0.3894	0.6453	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR21_KIDNEY	0.85	1	1.0347	TRUE	0	1	0	4	1	TRUE	ACH-000016
SLR21_KIDNEY	TIMM23--RP11-464F9.1	31	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	297	16	0.11	0.69	0.3449	0.0445	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SLR21_KIDNEY	0.11	0.69	0.3894	TRUE	519	3926	326	965	0	FALSE	ACH-000016
SLR21_KIDNEY	PLXDC1--TAF13	29	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3227	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SLR21_KIDNEY	1	1	0.3227	TRUE	7	10	0	216	0	FALSE	ACH-000016
SLR21_KIDNEY	HCG4P5--SPP1	8	58	HCG4P5	1479	chr6:29910366:-	SPP1	5044	chr4:88896869:+	INCL_NON_REF_SPLICE	YES	12	0	0.85	1	0.089	0.6453	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR21_KIDNEY	0.85	1	0.7343	TRUE	0	1	0	4	1	TRUE	ACH-000016
SLR21_KIDNEY	SAMD5--SASH1	20	4	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	34	7	0.41	0.77	0.2225	0.0445	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SLR21_KIDNEY	0.41	0.77	0.267	TRUE	53	396	64	110	0	FALSE	ACH-000016
SLR21_KIDNEY	MT-ND6--MT-TE	18	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2003	0.0223	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR21_KIDNEY	1	1	0.2226	FALSE	499	1288	110	792	0	FALSE	ACH-000016
SLR21_KIDNEY	HCG4P5--SPP1	6	44	HCG4P5	1499	chr6:29910346:-	SPP1	5077	chr4:88896902:+	INCL_NON_REF_SPLICE	YES	7	0	0.88	1	0.0668	0.4895	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR21_KIDNEY	0.88	1	0.5563	TRUE	0	1	0	4	1	TRUE	ACH-000016
SLR21_KIDNEY	HCG4P5--SPP1	5	47	HCG4P5	1492	chr6:29910353:-	SPP1	5057	chr4:88896882:+	INCL_NON_REF_SPLICE	YES	9	0	0.85	1	0.0556	0.5229	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR21_KIDNEY	0.85	1	0.5785	TRUE	0	1	0	4	1	TRUE	ACH-000016
SLR21_KIDNEY	RP11-96H19.1--RP11-446N19.1	14	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	6	0	0.79	1	0.1558	0.1001	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SLR21_KIDNEY	0.79	1	0.2559	FALSE	515	4851	409	746	0	FALSE	ACH-000016
SLR21_KIDNEY	MT-ND5--MT-ND6	12	15	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	1	5947	0.96	0	0.1335	0.1669	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SLR21_KIDNEY	0	0.96	0.3004	FALSE	26	124	4	93	0	FALSE	ACH-000016
SLR21_KIDNEY	HCG4P5--SPP1	5	42	HCG4P5	1515	chr6:29910330:-	SPP1	5082	chr4:88896907:+	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.0556	0.4673	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR21_KIDNEY	0.89	1	0.5229	TRUE	0	1	0	4	1	TRUE	ACH-000016
SLR21_KIDNEY	CTD-2337A12.1--CAST	14	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	43	1	0.27	0.1558	0.0223	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SLR21_KIDNEY	0.27	1	0.1781	TRUE	347	1186	183	220	0	FALSE	ACH-000016
SLR21_KIDNEY	HCG4P5--SPP1	3	46	HCG4P5	1515	chr6:29910330:-	SPP1	5071	chr4:88896896:+	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.0334	0.5118	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR21_KIDNEY	0.89	1	0.5452	TRUE	0	1	0	4	1	TRUE	ACH-000016
SLR21_KIDNEY	MT-ND6--MT-TE	14	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1558	0.0223	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR21_KIDNEY	1	1	0.1781	FALSE	499	1288	110	792	0	FALSE	ACH-000016
SLR21_KIDNEY	RP11-123O10.4--GRIP1	13	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1446	0.0668	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SLR21_KIDNEY	1	1	0.2114	FALSE	416	2512	207	587	0	FALSE	ACH-000016
SLR21_KIDNEY	C3--SPP1	10	13	C3	10089	chr19:6711195:-	SPP1	33988	chr4:88896869:+	INCL_NON_REF_SPLICE	YES	4684	0	0	1	0.1113	0.1446	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,C3->chr19:6677715-6730573:-,complement_component_3,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR21_KIDNEY	0	1	0.2559	TRUE	0	0	0	1	0	FALSE	ACH-000016
SLR21_KIDNEY	RNASET2--RPS6KA2	12	5	RNASET2	10057	chr6:167352383:-	RPS6KA2	22351	chr6:167271747:-	ONLY_REF_SPLICE	YES	1095	0	0.02	1	0.1335	0.0556	{Klijn_CCL:Kidney=1,Cervix=1},NEIGHBORS[23053],RNASET2->Oncogene{Bushman},chr6:167342992-167370679:-,ribonuclease_T2,RPS6KA2->chr6:166822852-167319939:-,ribosomal_protein_S6_kinase_A2	SLR21_KIDNEY	0.02	1	0.1891	FALSE	1	1	0	3	0	FALSE	ACH-000016
SLR21_KIDNEY	C3--SPP1	5	27	C3	18749	chr19:6694502:-	SPP1	33985	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	5412	0	0.01	1	0.0556	0.3004	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,C3->chr19:6677715-6730573:-,complement_component_3,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR21_KIDNEY	0.01	1	0.356	TRUE	0	0	0	1	0	FALSE	ACH-000016
SLR21_KIDNEY	MT-ND6--MT-TE	10	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.81	1	0.1113	0.0779	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR21_KIDNEY	0.81	1	0.1892	FALSE	499	1288	110	792	0	FALSE	ACH-000016
SLR21_KIDNEY	MT-TA--MT-TC	11	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1224	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR21_KIDNEY	1	1	0.1224	FALSE	462	80	0	856	0	FALSE	ACH-000016
SLR21_KIDNEY	MT-TA--MT-TC	10	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1113	0.0334	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR21_KIDNEY	1	1	0.1447	FALSE	462	80	0	856	0	FALSE	ACH-000016
SLR21_KIDNEY	MT-ND5--MT-ND6	5	19	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0556	0.2114	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SLR21_KIDNEY	1	1	0.267	FALSE	26	124	4	93	0	FALSE	ACH-000016
SLR21_KIDNEY	C3--SPP1	8	4	C3	8726	chr19:6712618:-	SPP1	33999	chr4:88896880:+	INCL_NON_REF_SPLICE	YES	5142	0	0	1	0.089	0.0445	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,C3->chr19:6677715-6730573:-,complement_component_3,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR21_KIDNEY	0	1	0.1335	TRUE	0	0	0	1	0	FALSE	ACH-000016
SLR21_KIDNEY	C3--SPP1	5	14	C3	10106	chr19:6711178:-	SPP1	33999	chr4:88896880:+	INCL_NON_REF_SPLICE	YES	4879	0	0	1	0.0556	0.1558	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,C3->chr19:6677715-6730573:-,complement_component_3,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR21_KIDNEY	0	1	0.2114	TRUE	0	0	0	1	0	FALSE	ACH-000016
SLR21_KIDNEY	RARRES2--AKR1B10	7	2	RARRES2	2239	chr7:150037525:-	AKR1B10	14045	chr7:134222347:+	INCL_NON_REF_SPLICE	YES	9976	7379	0	0	0.0779	0.0223	RARRES2->chr7:150035408-150038763:-,retinoic_acid_receptor_responder_2,AKR1B10->aldo-keto_reductase_family_1,_member_B10_(aldose_reductase),chr7:134212344-134226160:+	SLR21_KIDNEY	0	0	0.1002	TRUE	0	0	0	1	0	FALSE	ACH-000016
SLR21_KIDNEY	MT-TA--MT-TC	6	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0668	0.0334	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR21_KIDNEY	1	1	0.1002	FALSE	462	80	0	856	0	FALSE	ACH-000016
SLR21_KIDNEY	C15orf57--CBX3	5	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	66	55	0.14	0.17	0.0556	0.0668	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SLR21_KIDNEY	0.14	0.17	0.1224	TRUE	267	562	48	632	0	FALSE	ACH-000016
SLR21_KIDNEY	C15orf57--CBX3	5	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	65	54	0.14	0.17	0.0556	0.0668	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SLR21_KIDNEY	0.14	0.17	0.1224	TRUE	267	562	48	632	0	FALSE	ACH-000016
SLR21_KIDNEY	MT-ND6--MT-TE	4	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.76	1	0.0445	0.1001	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR21_KIDNEY	0.76	1	0.1446	FALSE	499	1288	110	792	0	FALSE	ACH-000016
SLR21_KIDNEY	ACTR3C--RP11-728K20.1	5	4	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	44	0	0.17	1	0.0556	0.0445	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	SLR21_KIDNEY	0.17	1	0.1001	TRUE	0	5	0	16	1	FALSE	ACH-000016
SLR21_KIDNEY	APP--MT-ND2	6	0	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0668	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SLR21_KIDNEY	1	1	0.0668	FALSE	0	1	0	51	0	FALSE	ACH-000016
SLR21_KIDNEY	CTD-2008L17.1--RP11-456O19.2	5	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	1	0.88	0.88	0.0556	0.0223	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SLR21_KIDNEY	0.88	0.88	0.0779	FALSE	33	240	4	98	0	FALSE	ACH-000016
SLR21_KIDNEY	MT-ND6--MT-TE	4	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0445	0.0668	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR21_KIDNEY	1	1	0.1113	FALSE	499	1288	110	792	0	FALSE	ACH-000016
SLR21_KIDNEY	RP11-155G15.2--RP11-1E3.1	5	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0556	0.0111	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	SLR21_KIDNEY	1	1	0.0667	FALSE	46	201	11	112	0	FALSE	ACH-000016
SLR21_KIDNEY	RP11-96H19.1--RP11-446N19.1	2	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	6	0	0.71	1	0.0223	0.1446	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SLR21_KIDNEY	0.71	1	0.1669	FALSE	275	511	55	178	0	FALSE	ACH-000016
SLR21_KIDNEY	FTH1--ACTG1	5	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0556	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SLR21_KIDNEY	1	1	0.0556	TRUE	0	0	0	64	0	FALSE	ACH-000016
SLR21_KIDNEY	RP11-511B23.2--EEA1	5	0	RP11-511B23.2	5811	chr12:93532824:-	EEA1	16005	chr12:93285497:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0556	0	NEIGHBORS[74084],RP11-511B23.2->chr12:93397191-93609455:-,EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1	SLR21_KIDNEY	1	1	0.0556	FALSE	0	0	0	1	0	FALSE	ACH-000016
SLR21_KIDNEY	RP11-353N4.6--SEC22B	2	11	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	85	916	0.13	0.01	0.0223	0.1224	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SLR21_KIDNEY	0.01	0.13	0.1447	TRUE	33	36	9	21	0	FALSE	ACH-000016
SLR21_KIDNEY	RP11-96H19.1--RP11-446N19.1	2	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	6	0	0.68	1	0.0223	0.1224	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SLR21_KIDNEY	0.68	1	0.1447	FALSE	407	2205	196	549	0	FALSE	ACH-000016
SLR21_KIDNEY	ACTR3C--RP11-728K20.1	4	2	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	19906	chr7:149588390:-	ONLY_REF_SPLICE	YES	44	0	0.12	1	0.0445	0.0223	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	SLR21_KIDNEY	0.12	1	0.0668	TRUE	3	46	4	12	0	FALSE	ACH-000016
SLR21_KIDNEY	RP11-353N4.6--SEC22B	2	9	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	85	1057	0.11	0.01	0.0223	0.1001	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SLR21_KIDNEY	0.01	0.11	0.1224	TRUE	49	42	7	43	0	FALSE	ACH-000016
SLR21_KIDNEY	LINC01036--LINC01037	4	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0445	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SLR21_KIDNEY	1	1	0.0445	FALSE	0	24	0	62	0	FALSE	ACH-000016
SLR21_KIDNEY	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0445	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	SLR21_KIDNEY	1	1	0.0445	TRUE	22	156	2	142	0	FALSE	ACH-000016
SLR21_KIDNEY	RP11-353N4.6--SEC22B	2	8	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	85	1057	0.11	0.01	0.0223	0.089	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SLR21_KIDNEY	0.01	0.11	0.1113	TRUE	49	42	7	43	0	FALSE	ACH-000016
SLR21_KIDNEY	NRIP1--AF127936.7	3	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	27	0	0.18	1	0.0334	0.0334	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR21_KIDNEY	0.18	1	0.0668	FALSE	164	806	69	479	0	FALSE	ACH-000016
SLR21_KIDNEY	PCAT1--RP11-382A18.2	3	2	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0.0223	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	SLR21_KIDNEY	1	1	0.0557	TRUE	4	84	1	46	0	FALSE	ACH-000016
SLR21_KIDNEY	FTH1--ACTG1	3	0	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SLR21_KIDNEY	1	1	0.0334	TRUE	0	0	0	64	0	FALSE	ACH-000016
SLR21_KIDNEY	LINC01036--LINC01037	3	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SLR21_KIDNEY	1	1	0.0334	FALSE	0	26	0	50	0	FALSE	ACH-000016
SLR21_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR21_KIDNEY	1	1	0.0334	FALSE	499	1288	110	792	0	FALSE	ACH-000016
SLR21_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR21_KIDNEY	1	1	0.0334	FALSE	499	1288	110	792	0	FALSE	ACH-000016
SLR21_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SLR21_KIDNEY	1	1	0.0334	FALSE	499	1288	110	792	0	FALSE	ACH-000016
SLR21_KIDNEY	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR21_KIDNEY	1	1	0.0334	FALSE	292	1546	117	613	0	FALSE	ACH-000016
SLR21_KIDNEY	AC011997.1--PLCL1	2	2	AC011997.1	3224	chr2:198636638:+	PLCL1	11793	chr2:198948482:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0223	0.0223	NEIGHBORS[29879],AC011997.1->chr2:198557830-198639547:+,PLCL1->Oncogene{Bushman},chr2:198669426-199437305:+,phospholipase_C_like_1	SLR21_KIDNEY	0.67	1	0.0446	FALSE	0	9	0	3	0	FALSE	ACH-000016
SLR21_KIDNEY	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	27	0.75	0.1	0.0223	0.0111	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SLR21_KIDNEY	0.1	0.75	0.0334	FALSE	16	356	14	466	0	FALSE	ACH-000016
SLR21_KIDNEY	CPSF6--CHMP1A	2	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SLR21_KIDNEY	1	1	0.0223	TRUE	95	74	6	34	0	FALSE	ACH-000016
SLR21_KIDNEY	DNAJC25--UGCG	2	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	SLR21_KIDNEY	1	1	0.0223	TRUE	50	73	10	50	0	FALSE	ACH-000016
SLR21_KIDNEY	FER1L4--ARHGEF12	2	0	FER1L4	18104	chr20:34164303:-	ARHGEF12	29956	chr11:120207946:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	FER1L4->chr20:34146507-34195484:-,fer-1_like_family_member_4,_pseudogene,ARHGEF12->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_12,chr11:120207787-120360645:+	SLR21_KIDNEY	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000016
SLR21_KIDNEY	NKTR--ARF4	2	0	NKTR	1451	chr3:42642556:+	ARF4	33959	chr3:57570191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NKTR->chr3:42642106-42690227:+,natural_killer_cell_triggering_receptor,ARF4->ADP_ribosylation_factor_4,chr3:57557090-57583947:-	SLR21_KIDNEY	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000016
SLR21_KIDNEY	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR21_KIDNEY	1	1	0.0223	FALSE	25	145	6	90	0	FALSE	ACH-000016
SLR21_KIDNEY	RP11-656D10.3--RP11-227G15.3	2	0	RP11-656D10.3	1073	chr1:40974261:-	RP11-227G15.3	8925	chr17:30685522:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	RP11-656D10.3->chr1:40958829-40974333:-,RP11-227G15.3->chr17:30651450-30687719:+	SLR21_KIDNEY	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000016
SLR21_KIDNEY	STON2--SEPT9	2	0	STON2	2681	chr14:81893446:-	SEPT9	51579	chr17:75478226:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	STON2->chr14:81727000-81902809:-,stonin_2,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	SLR21_KIDNEY	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000016
SLR21_KIDNEY	VAPB--APCDD1L-AS1	2	0	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	31664	chr20:57193796:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	SLR21_KIDNEY	1	1	0.0223	FALSE	2	12	0	8	0	FALSE	ACH-000016
SLR21_KIDNEY	ZCCHC17--ARID1A	2	0	ZCCHC17	4340	chr1:31792013:+	ARID1A	17709	chr1:27056142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	ZCCHC17->chr1:31769842-31837783:+,zinc_finger_CCHC-type_containing_17,ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+	SLR21_KIDNEY	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000016
SLR21_KIDNEY	RNASET2--RPS6KA2	1	3	RNASET2	10057	chr6:167352383:-	RPS6KA2	30155	chr6:166952272:-	ONLY_REF_SPLICE	YES	1095	0	0	1	0.0111	0.0334	{Klijn_CCL:Kidney=1,Cervix=1},NEIGHBORS[23053],RNASET2->Oncogene{Bushman},chr6:167342992-167370679:-,ribonuclease_T2,RPS6KA2->chr6:166822852-167319939:-,ribosomal_protein_S6_kinase_A2	SLR21_KIDNEY	0	1	0.0445	FALSE	1	0	0	3	0	FALSE	ACH-000016
SLR21_KIDNEY	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0111	0.0334	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SLR21_KIDNEY	1	1	0.0445	FALSE	93	270	15	244	0	FALSE	ACH-000016
SLR21_KIDNEY	SLC16A12--LIPA	1	3	SLC16A12	5062	chr10:91222136:-	LIPA	29664	chr10:91007406:-	ONLY_REF_SPLICE	YES	9	191	0.31	0.02	0.0111	0.0334	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SLR21_KIDNEY	0.02	0.31	0.0445	FALSE	12	128	21	13	0	FALSE	ACH-000016
SLR21_KIDNEY	CCDC122--ENOX1	1	2	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	68	0	0.04	1	0.0111	0.0223	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	SLR21_KIDNEY	0.04	1	0.0334	FALSE	39	52	2	34	0	FALSE	ACH-000016
SLR21_KIDNEY	RP11-467J12.4--CASC16	1	2	RP11-467J12.4	2192	chr16:53081117:-	CASC16	7619	chr16:52682024:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0111	0.0223	RP11-467J12.4->chr16:53069602-53086785:-,CASC16->cancer_susceptibility_candidate_16_(non-protein_coding),chr16:52586002-52686017:-	SLR21_KIDNEY	0.75	1	0.0334	TRUE	0	6	0	3	6	TRUE	ACH-000016
SLR21_KIDNEY	VTI1A--RP11-57H14.3	1	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	30	0	0.09	1	0.0111	0.0223	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SLR21_KIDNEY	0.09	1	0.0334	FALSE	272	151	14	158	0	FALSE	ACH-000016
SLR21_KIDNEY	GRN--ACTG1	1	1	GRN	6397	chr17:42429939:+	ACTG1	12961	chr17:79479168:-	ONLY_REF_SPLICE	NO	1560	8402	0	0	0.0111	0.0111	GTEx&tcga_normals:1/3694=0.03%,GRN->Oncogene{Bushman},chr17:42422614-42430470:+,granulin,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SLR21_KIDNEY	0	0	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000016
SLR21_KIDNEY	MTAP--CDKN2B-AS1	1	1	MTAP	9899	chr9:21854869:+	CDKN2B-AS1	44105	chr9:22120199:+	ONLY_REF_SPLICE	YES	205	0	0.01	1	0.0111	0.0111	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	SLR21_KIDNEY	0.01	1	0.0222	FALSE	0	1	1	2	0	FALSE	ACH-000016
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	686	14	IGH@	94754	chr14:106330024:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	0	132	1	0.84	7.554	0.1542	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	1	7.7082	TRUE	0	0	0	6	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	478	10	IGH@	94353	chr14:106330425:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	1	132	1	0.79	5.2636	0.1101	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	5.3737	TRUE	0	0	0	5	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	259	20	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	4	0	0.99	1	2.852	0.2202	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	3.0722	TRUE	0	0	0	25	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	179	24	IGH@	95370	chr14:106329408:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	0	132	1	0.61	1.9711	0.2643	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	1	2.2354	TRUE	0	0	0	6	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	174	10	IGH@	93161	chr14:106331617:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	1	132	0.99	0.58	1.916	0.1101	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	0.99	2.0261	TRUE	0	0	0	5	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAF13--SORT1	159	0	TAF13	1082	chr1:109618543:-	SORT1	24923	chr1:109878968:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.7508	0	TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-,SORT1->chr1:109852192-109940573:-,sortilin_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.7508	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	96	41	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0571	0.4515	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.5086	TRUE	508	994	45	981	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITPK1--ISM2	78	52	ITPK1	12607	chr14:93418291:-	ISM2	24406	chr14:77951262:-	ONLY_REF_SPLICE	YES	146	0	0.47	1	0.8589	0.5726	{Klijn_CCL:Lymphoid=1},ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,ISM2->chr14:77940740-77965210:-,isthmin_2	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	1.4315	TRUE	0	0	0	2	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	88	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.969	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.969	TRUE	0	0	0	518	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	81	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8919	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8919	FALSE	369	2501	205	193	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRF--B4GALT2	70	22	PTPRF	27948	chr1:44079386:+	B4GALT2	42159	chr1:44450537:+	ONLY_REF_SPLICE	YES	63	37	0.59	0.71	0.7708	0.2423	{Klijn_CCL:Lymphoid=1},PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F,B4GALT2->beta-1,4-galactosyltransferase_2,chr1:44444615-44456840:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	0.71	1.0131	TRUE	0	0	0	2	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	66	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7268	0.0881	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8149	FALSE	462	80	0	856	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	64	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	240	21	0.21	0.76	0.7047	0.011	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.76	0.7157	TRUE	519	3926	326	965	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	47	46	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	23	0	0.8	1	0.5175	0.5065	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	1.024	TRUE	1	1	0	28	1	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DMXL1--TNFAIP8	46	50	DMXL1	33756	chr5:118507664:+	TNFAIP8	68062	chr5:118728511:+	ONLY_REF_SPLICE	YES	44	500	0.69	0.16	0.5065	0.5506	NEIGHBORS[19554],DMXL1->Dmx_like_1,chr5:118373467-118584833:+,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.69	1.0571	FALSE	0	0	0	2	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.7	48	34	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.7	14808	chr1:149284655:+	INCL_NON_REF_SPLICE	YES	205	0	0.29	1	0.5286	0.3744	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.903	TRUE	1	0	0	4	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	51	7	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	4090	0	0.01	1	0.5616	0.0771	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.6387	FALSE	0	0	0	189	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-344E13.3--UBBP4	25	65	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2753	0.7158	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9911	TRUE	23	13	0	54	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAF13--SORT1	32	19	TAF13	2016	chr1:109617609:-	SORT1	24923	chr1:109878968:-	ONLY_REF_SPLICE	YES	61	6	0.46	0.89	0.3524	0.2092	TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-,SORT1->chr1:109852192-109940573:-,sortilin_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.89	0.5616	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	110	MT-ND4	1967	chrM:11726:+	MT-ND4L	5384	chrM:10475:+	INCL_NON_REF_SPLICE	YES	21283	0	0.01	1	0.033	1.2113	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	1.2443	FALSE	344	827	44	306	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	96	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	122	0	0.45	1	0.044	1.0571	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	1	1.1011	FALSE	344	827	44	306	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	97	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	125	0	0.44	1	0.033	1.0681	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	1.1011	FALSE	344	827	44	306	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	95	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	96	0	0.51	1	0.033	1.0461	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	1	1.0791	FALSE	344	826	44	306	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DMXL1--TNFAIP8	21	16	DMXL1	33067	chr5:118506975:+	TNFAIP8	68062	chr5:118728511:+	ONLY_REF_SPLICE	YES	51	500	0.42	0.07	0.2312	0.1762	NEIGHBORS[19554],DMXL1->Dmx_like_1,chr5:118373467-118584833:+,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.42	0.4074	FALSE	0	0	0	2	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	22	11	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	4109	0	0.01	1	0.2423	0.1211	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.3634	FALSE	0	0	0	189	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	13	45	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1432	0.4955	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6387	FALSE	369	2501	205	193	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	11	50	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1211	0.5506	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6717	FALSE	369	2501	205	193	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	18	17	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	5	2	0.88	0.95	0.1982	0.1872	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.95	0.3854	FALSE	20	187	4	79	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--RP11-115D19.1	21	4	CCSER1	1297	chr4:91048982:+	RP11-115D19.1	54237	chr4:90640977:+	ONLY_REF_SPLICE	YES	14	0	0.64	1	0.2312	0.044	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.2752	TRUE	0	2	0	2	2	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	59	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	20	2	0.76	0.97	0.0551	0.6497	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.97	0.7048	FALSE	344	821	44	306	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	14	20	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	72	53	0.32	0.39	0.1542	0.2202	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.39	0.3744	TRUE	267	562	48	632	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	15	15	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	3	5320	0.91	0.01	0.1652	0.1652	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.91	0.3304	FALSE	26	124	4	93	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.7	10	34	RP11-353N4.6	2221	chr1:149576702:+	RP11-403I13.7	14803	chr1:149284650:+	INCL_NON_REF_SPLICE	YES	210	0	0.17	1	0.1101	0.3744	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.4845	TRUE	1	0	0	4	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-857K21.11--MTATP6P1	14	14	RP5-857K21.11	1107	chr1:569862:+	MTATP6P1	5103	chr1:569631:+	INCL_NON_REF_SPLICE	YES	0	12	1	0.7	0.1542	0.1542	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	1	0.3084	TRUE	16	42	4	10	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	7	40	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0771	0.4405	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5176	FALSE	369	2501	205	193	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-857K21.11--MTATP6P1	11	15	RP5-857K21.11	1090	chr1:569845:+	MTATP6P1	5082	chr1:569610:+	INCL_NON_REF_SPLICE	YES	0	36	1	0.42	0.1211	0.1652	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.2863	TRUE	16	42	4	10	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-857K21.11--MTATP6P1	13	5	RP5-857K21.11	1105	chr1:569860:+	MTATP6P1	5191	chr1:569719:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1432	0.0551	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1983	TRUE	16	42	4	10	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.7	5	34	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.7	14808	chr1:149284655:+	INCL_NON_REF_SPLICE	YES	210	0	0.16	1	0.0551	0.3744	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.4295	TRUE	1	0	0	4	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	11	7	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	53	0	0.25	1	0.1211	0.0771	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.1982	FALSE	272	151	14	158	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-ND1	11	5	MT-CO1	1653	chrM:6556:+	MT-ND1	5761	chrM:3525:+	INCL_NON_REF_SPLICE	YES	30314	9206	0	0	0.1211	0.0551	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1762	FALSE	39	30	6	19	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	10	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1101	0.0991	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2092	FALSE	462	80	0	856	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.7	3	33	RP11-353N4.6	3136	chr1:149577617:+	RP11-403I13.7	14811	chr1:149284658:+	INCL_NON_REF_SPLICE	NO	205	0	0.15	1	0.033	0.3634	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.3964	TRUE	1	0	0	4	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	9	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	1	0.82	0.95	0.0991	0.0991	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.95	0.1982	FALSE	515	4851	409	746	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-857K21.11--MTATP6P1	10	5	RP5-857K21.11	1106	chr1:569861:+	MTATP6P1	5190	chr1:569718:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1101	0.0551	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1652	TRUE	16	42	4	10	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	14	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1592	0	0.01	1	0.0771	0.1542	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.2313	FALSE	344	827	44	306	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	9	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	8	6	0.65	0.71	0.0991	0.0661	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.71	0.1652	FALSE	16	356	14	466	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	13	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	122	0	0.14	1	0.0771	0.1432	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.2203	FALSE	344	826	44	306	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TM9SF3--DLEU7-AS1	7	13	TM9SF3	5040	chr10:98325061:-	DLEU7-AS1	24674	chr13:51381990:+	INCL_NON_REF_SPLICE	YES	338	0	0.06	1	0.0771	0.1432	TM9SF3->chr10:98277866-98347209:-,transmembrane_9_superfamily_member_3,DLEU7-AS1->DLEU7_antisense_RNA_1,chr13:51381992-51423190:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.2203	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1102P16.1--EYA1	9	4	RP11-1102P16.1	7994	chr8:72447979:-	EYA1	19218	chr8:72268746:-	ONLY_REF_SPLICE	YES	5	297	0.72	0.04	0.0991	0.044	NEIGHBORS[41208],RP11-1102P16.1->chr8:72315675-72504260:-,EYA1->EYA_transcriptional_coactivator_and_phosphatase_1,chr8:72109668-72274467:-	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.72	0.1431	FALSE	1	26	0	4	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	23	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	15731	0	0	1	0.044	0.2533	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2973	FALSE	328	800	43	304	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	6	15	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.95	0.0661	0.1652	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2313	FALSE	26	124	4	93	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITPK1--ISM2	2	30	ITPK1	11539	chr14:93424546:-	ISM2	24406	chr14:77951262:-	ONLY_REF_SPLICE	NO	137	0	0.19	1	0.022	0.3303	{Klijn_CCL:Lymphoid=1},ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,ISM2->chr14:77940740-77965210:-,isthmin_2	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.3523	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	7	8	MT-ND1	1297	chrM:3603:+	MT-RNR2	5502	chrM:2216:+	INCL_NON_REF_SPLICE	YES	70	12245	0.18	0	0.0771	0.0881	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.18	0.1652	FALSE	120	26	5	87	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-857K21.11--MTATP6P1	7	5	RP5-857K21.11	1089	chr1:569844:+	MTATP6P1	5174	chr1:569702:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0771	0.0551	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1322	TRUE	16	42	4	10	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-ND1	7	4	MT-CO1	1577	chrM:6480:+	MT-ND1	5559	chrM:3323:+	INCL_NON_REF_SPLICE	YES	26154	0	0	1	0.0771	0.044	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1211	FALSE	39	30	6	19	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	6	8	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	54	0	0.21	1	0.0661	0.0881	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.1542	FALSE	114	26	4	85	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1DP3--FRY	6	7	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.0661	0.0771	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.1432	FALSE	20	24	2	21	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	6	6	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	5	1	0.71	0.92	0.0661	0.0661	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.92	0.1322	FALSE	33	240	4	98	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-857K21.11--MTATP6P1	4	14	RP5-857K21.11	1075	chr1:569830:+	MTATP6P1	5064	chr1:569592:+	INCL_NON_REF_SPLICE	YES	0	33	1	0.35	0.044	0.1542	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	1	0.1982	TRUE	16	42	4	10	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-857K21.11--MTATP6P1	5	10	RP5-857K21.11	1038	chr1:569793:+	MTATP6P1	4988	chr1:569516:+	INCL_NON_REF_SPLICE	YES	0	83	1	0.15	0.0551	0.1101	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.1652	TRUE	16	42	4	10	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0.0551	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1212	FALSE	462	80	0	856	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-857K21.11--MTATP6P1	7	1	RP5-857K21.11	1146	chr1:569901:+	MTATP6P1	5219	chr1:569747:+	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0771	0.011	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0881	TRUE	16	42	4	10	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	7	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0771	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0771	TRUE	0	0	0	81	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	7	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0771	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0771	FALSE	369	2501	205	193	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-857K21.11--MTATP6P1	3	16	RP5-857K21.11	1096	chr1:569851:+	MTATP6P1	5088	chr1:569616:+	INCL_NON_REF_SPLICE	YES	0	36	1	0.35	0.033	0.1762	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	1	0.2092	TRUE	16	42	4	10	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	5	7	MT-ND1	1235	chrM:3541:+	MT-RNR2	5565	chrM:2279:+	INCL_NON_REF_SPLICE	YES	47	12184	0.2	0	0.0551	0.0771	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.2	0.1322	FALSE	120	26	5	87	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	3	15	MT-ND5	2769	chrM:14105:+	MT-ND6	5868	chrM:14618:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0.1652	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1982	FALSE	26	124	4	93	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	2	18	AP003900.6	1122	chr21:11169841:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	4	0	0.83	1	0.022	0.1982	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.2202	TRUE	0	0	0	25	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COL4A3--AC073065.3	5	6	COL4A3	1249	chr2:228029529:+	AC073065.3	54315	chr2:228667871:+	INCL_NON_REF_SPLICE	YES	23	0	0.32	1	0.0551	0.0661	COL4A3->Oncogene{Bushman},chr2:228029281-228179508:+,collagen_type_IV_alpha_3,AC073065.3->chr2:228666556-228669421:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.1212	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-857K21.11--MTATP6P1	4	10	RP5-857K21.11	1039	chr1:569794:+	MTATP6P1	4853	chr1:569381:+	INCL_NON_REF_SPLICE	YES	0	52	1	0.21	0.044	0.1101	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.1541	TRUE	16	42	4	10	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-ND1	5	5	MT-CO1	1653	chrM:6556:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	30314	8822	0	0	0.0551	0.0551	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1102	FALSE	39	30	6	19	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	6	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0661	0.011	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0771	FALSE	292	1546	117	613	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--RP11-115D19.1	6	0	CCSER1	1297	chr4:91048982:+	RP11-115D19.1	55584	chr4:90647535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0661	0	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0661	TRUE	0	0	0	2	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	6	0	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0661	TRUE	0	0	0	81	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	4	8	MT-ND1	1282	chrM:3588:+	MT-RNR2	4985	chrM:1699:+	INCL_NON_REF_SPLICE	NO	59	0	0.17	1	0.044	0.0881	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.1321	FALSE	114	26	4	85	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	4	8	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	54	11876	0.18	0	0.044	0.0881	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.18	0.1321	FALSE	120	26	5	87	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0661	FALSE	369	2501	205	193	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-857K21.11--MTATP6P1	6	0	RP5-857K21.11	1075	chr1:569830:+	MTATP6P1	5225	chr1:569753:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0661	TRUE	16	42	4	10	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRMT10C--PCED1B	5	3	TRMT10C	1142	chr3:101280847:+	PCED1B	12139	chr12:47628790:+	ONLY_REF_SPLICE	YES	118	6	0.06	0.57	0.0551	0.033	TRMT10C->chr3:101280706-101285290:+,tRNA_methyltransferase_10C,_mitochondrial_RNase_P_subunit,PCED1B->PC-esterase_domain_containing_1B,chr12:47473386-47630443:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.57	0.0881	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--MMRN1	5	2	CCSER1	6160	chr4:91234198:+	MMRN1	52159	chr4:90872756:+	ONLY_REF_SPLICE	YES	11	2	0.39	0.78	0.0551	0.022	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.78	0.0771	TRUE	0	0	0	2	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--RP11-115D19.1	4	6	CCSER1	1297	chr4:91048982:+	RP11-115D19.1	49506	chr4:90602748:+	INCL_NON_REF_SPLICE	YES	14	0	0.42	1	0.044	0.0661	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.1101	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	10	MT-ND1	1291	chrM:3597:+	MT-RNR2	4993	chrM:1707:+	INCL_NON_REF_SPLICE	YES	69	0	0.16	1	0.033	0.1101	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.1431	FALSE	114	26	4	85	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	5	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0551	0.022	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0771	FALSE	416	2512	207	587	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.033	0.0991	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.1321	FALSE	407	2205	196	549	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TM9SF3--DLEU7-AS1	3	9	TM9SF3	5040	chr10:98325061:-	DLEU7-AS1	25360	chr13:51382676:+	ONLY_REF_SPLICE	YES	338	6	0.03	0.67	0.033	0.0991	TM9SF3->chr10:98277866-98347209:-,transmembrane_9_superfamily_member_3,DLEU7-AS1->DLEU7_antisense_RNA_1,chr13:51381992-51423190:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.67	0.1321	TRUE	0	0	0	1	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-ND1	4	4	MT-CO1	1585	chrM:6488:+	MT-ND1	5567	chrM:3331:+	INCL_NON_REF_SPLICE	YES	25576	0	0	1	0.044	0.044	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.088	FALSE	39	30	6	19	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-ND1	4	4	MT-CO1	1611	chrM:6514:+	MT-ND1	5592	chrM:3356:+	INCL_NON_REF_SPLICE	YES	26344	0	0	1	0.044	0.044	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.088	FALSE	39	30	6	19	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	8	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	55	0	0.17	1	0.033	0.0881	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.1211	FALSE	114	26	4	85	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1102P16.1--EYA1	4	4	RP11-1102P16.1	11923	chr8:72383093:-	EYA1	19218	chr8:72268746:-	ONLY_REF_SPLICE	YES	1	297	0.89	0.03	0.044	0.044	NEIGHBORS[41208],RP11-1102P16.1->chr8:72315675-72504260:-,EYA1->EYA_transcriptional_coactivator_and_phosphatase_1,chr8:72109668-72274467:-	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.89	0.088	FALSE	1	26	0	4	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	4	4	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	9	6	0.47	0.57	0.044	0.044	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.57	0.088	FALSE	0	48	1	163	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	7	MT-ND1	1227	chrM:3533:+	MT-RNR2	5001	chrM:1715:+	INCL_NON_REF_SPLICE	NO	44	0	0.19	1	0.033	0.0771	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.1101	FALSE	114	26	4	85	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--MMRN1	4	2	CCSER1	1297	chr4:91048982:+	MMRN1	41500	chr4:90815875:+	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.044	0.022	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.066	TRUE	0	3	0	5	3	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	2	10	IGH@	93369	chr14:106331409:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	NO	1	132	0.92	0.08	0.022	0.1101	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.92	0.1321	TRUE	0	0	0	5	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	2	10	IGH@	93981	chr14:106330797:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	1	132	0.92	0.08	0.022	0.1101	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.92	0.1321	TRUE	0	0	0	5	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	4	2	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	205	0	0.03	1	0.044	0.022	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.066	TRUE	61	154	6	19	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--RP11-115D19.1	3	5	CCSER1	1297	chr4:91048982:+	RP11-115D19.1	50594	chr4:90612436:+	ONLY_REF_SPLICE	YES	14	0	0.36	1	0.033	0.0551	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.0881	TRUE	0	0	0	2	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-ND2	3	5	MT-CO1	1554	chrM:6457:+	MT-ND2	5587	chrM:4514:+	INCL_NON_REF_SPLICE	YES	26296	0	0	1	0.033	0.0551	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0881	FALSE	55	19	1	13	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	5	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	96	0	0.08	1	0.033	0.0551	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0881	FALSE	344	826	44	306	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	5	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0.0551	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0881	FALSE	462	80	0	856	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.85	0.92	0.022	0.0991	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.92	0.1211	FALSE	467	2173	244	435	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TM9SF3--DLEU7-AS1	3	5	TM9SF3	5040	chr10:98325061:-	DLEU7-AS1	26527	chr13:51392657:+	ONLY_REF_SPLICE	YES	338	0	0.02	1	0.033	0.0551	TM9SF3->chr10:98277866-98347209:-,transmembrane_9_superfamily_member_3,DLEU7-AS1->DLEU7_antisense_RNA_1,chr13:51381992-51423190:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0881	TRUE	0	0	0	1	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL36	4	0	EIF1	1110	chr17:39845246:+	RPL36	11474	chr19:5690305:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL36->chr19:5674958-5691887:+,ribosomal_protein_L36	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.044	FALSE	344	821	44	306	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.044	FALSE	369	2501	205	193	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-ND2	3	3	MT-CO1	1544	chrM:6447:+	MT-ND2	5981	chrM:4908:+	INCL_NON_REF_SPLICE	NO	27154	16582	0	0	0.033	0.033	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.066	FALSE	55	19	1	13	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--SEC22B	3	3	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	205	373	0.03	0.02	0.033	0.033	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.066	TRUE	49	42	7	43	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-ND1	3	2	MT-CO1	1324	chrM:6227:+	MT-ND1	5558	chrM:3322:+	INCL_NON_REF_SPLICE	YES	10148	0	0	1	0.033	0.022	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.055	FALSE	39	29	6	19	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	4	0	0.73	1	0.011	0.1101	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	0.1211	FALSE	275	511	55	178	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC009948.5--CCNL2	3	1	AC009948.5	10733	chr2:179303717:+	CCNL2	21031	chr1:1326245:-	INCL_NON_REF_SPLICE	NO	68	519	0.06	0.01	0.033	0.011	AC009948.5->chr2:179278666-179304970:+,CCNL2->chr1:1321091-1334708:-,cyclin_L2	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.044	FALSE	0	0	0	1	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	5	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	24436	chr10:114650725:+	ONLY_REF_SPLICE	YES	53	0	0.12	1	0.022	0.0551	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.0771	FALSE	21	3	0	16	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP2B4--TRAF5	3	0	ATP2B4	1659	chr1:203596347:+	TRAF5	35269	chr1:211526581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,TRAF5->TNF_receptor_associated_factor_5,chr1:211499957-211548288:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL5	3	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.033	TRUE	0	0	0	39	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	0	EIF1	1087	chr17:39845223:+	RPS28	8126	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.033	TRUE	0	0	0	81	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.033	FALSE	462	80	0	856	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABCD2--KIF21A	2	3	ABCD2	10894	chr12:39967518:-	KIF21A	20458	chr12:39764063:-	ONLY_REF_SPLICE	YES	103	125	0.05	0.04	0.022	0.033	GTEx_FI:{Brain=[count:4=pct:0.6],Heart=[count:2=pct:0.8],Uterus=[count:2=pct:4.7],Adipose_Tissue=[count:2=pct:0.7]},ABCD2->ATP_binding_cassette_subfamily_D_member_2,chr12:39943835-40013553:-,KIF21A->chr12:39687030-39837192:-,kinesin_family_member_21A	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.05	0.055	TRUE	7	0	0	2	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FUBP1--ZZZ3	2	2	FUBP1	14090	chr1:78414840:-	ZZZ3	30935	chr1:78050340:-	ONLY_REF_SPLICE	YES	311	42	0.01	0.09	0.022	0.022	FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,ZZZ3->chr1:78028101-78149104:-,zinc_finger_ZZ-type_containing_3	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.09	0.044	FALSE	0	0	0	1	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	6	IGH@	95370	chr14:106329408:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	NO	0	2094	1	0	0.011	0.0661	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0771	FALSE	0	0	0	3	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	NO	8	2	0.47	0.78	0.011	0.0661	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.78	0.0771	FALSE	0	23	1	67	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	2	2	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	210	0	0.02	1	0.022	0.022	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.044	TRUE	61	154	6	19	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP13-188A5.1--KLF8	2	2	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	6	3	0.4	0.57	0.022	0.022	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.57	0.044	TRUE	10	78	6	20	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	5	IGH@	94754	chr14:106330024:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	NO	0	2094	1	0	0.011	0.0551	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0661	FALSE	0	0	0	3	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PARD3--CCNY	2	1	PARD3	3733	chr10:34805907:-	CCNY	48336	chr10:35772332:+	ONLY_REF_SPLICE	YES	230	142	0.01	0.02	0.022	0.011	GTEx&tcga_normals:1/3694=0.03%,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,CCNY->chr10:35535953-35860852:+,cyclin_Y	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.033	FALSE	0	0	0	1	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--GNAS	2	1	YWHAE	1332	chr17:1303341:-	GNAS	30056	chr20:57470667:+	ONLY_REF_SPLICE	YES	2388	991	0	0	0.022	0.011	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Colon_-_Transverse=1},YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.033	FALSE	0	6	0	6	1	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ALDOA--RP11-127H5.1	2	0	ALDOA	1410	chr16:30064820:+	RP11-127H5.1	22839	chr8:106258521:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,RP11-127H5.1->chr8:105602961-106431488:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	APOL2--SRGAP2C	2	0	APOL2	1514	chr22:36635487:-	SRGAP2C	15757	chr1:121124562:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	APOL2->apolipoprotein_L2,chr22:36622256-36636000:-,SRGAP2C->SLIT-ROBO_Rho_GTPase_activating_protein_2C,chr1:121107124-121129949:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP2B4--TRAF5	2	0	ATP2B4	1659	chr1:203596347:+	TRAF5	37498	chr1:211529709:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,TRAF5->TNF_receptor_associated_factor_5,chr1:211499957-211548288:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHIC2--FIP1L1	2	0	CHIC2	2860	chr4:54915122:-	FIP1L1	24555	chr4:54319087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_v2:{count=4;pct=0.05%;dist=Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Colon_-_Transverse=1},NEIGHBORS_OVERLAP:-:+:[54901],CHIC2->Oncogene{Bushman},chr4:54875956-54930857:-,cysteine_rich_hydrophobic_domain_2,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FARS2--RP3-380B8.4	2	0	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	FALSE	27	82	4	18	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLSCR1--CCDC11	2	0	PLSCR1	1398	chr3:146262254:-	CCDC11	21228	chr18:47778154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1,CCDC11->chr18:47753563-47792892:-	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2J3--NDUFA6	2	0	POLR2J3	5847	chr7:102207444:-	NDUFA6	20116	chr22:42483179:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,NDUFA6->NADH:ubiquinone_oxidoreductase_subunit_A6,chr22:42481529-42486959:-	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP5C--SCAMP2	2	0	PPP5C	4437	chr19:46879831:+	SCAMP2	20009	chr15:75146990:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,SCAMP2->chr15:75136071-75165706:-,secretory_carrier_membrane_protein_2	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAD51B--SIPA1L1	2	0	RAD51B	11638	chr14:68353921:+	SIPA1L1	77452	chr14:72190364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+,SIPA1L1->chr14:71787166-72207946:+,signal_induced_proliferation_associated_1_like_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1102P16.1--EYA1	1	4	RP11-1102P16.1	9174	chr8:72443317:-	EYA1	19218	chr8:72268746:-	ONLY_REF_SPLICE	YES	3	297	0.62	0.02	0.011	0.044	NEIGHBORS[41208],RP11-1102P16.1->chr8:72315675-72504260:-,EYA1->EYA_transcriptional_coactivator_and_phosphatase_1,chr8:72109668-72274467:-	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.62	0.055	FALSE	0	3	0	1	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-435B5.4--AMY2B	2	0	RP11-435B5.4	2843	chr1:143465380:-	AMY2B	23635	chr1:104108057:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RP11-435B5.4->chr1:143354963-143467632:-,AMY2B->amylase,_alpha_2B_(pancreatic),chr1:104096437-104122156:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPA1--CENPN	2	0	RPA1	8958	chr17:1779087:+	CENPN	33887	chr16:81060131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RPA1->chr17:1732996-1803376:+,replication_protein_A1,CENPN->centromere_protein_N,chr16:81040103-81066719:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TM9SF3--DLEU7-AS1	1	4	TM9SF3	5040	chr10:98325061:-	DLEU7-AS1	27599	chr13:51414164:+	ONLY_REF_SPLICE	NO	338	1	0.01	0.83	0.011	0.044	TM9SF3->chr10:98277866-98347209:-,transmembrane_9_superfamily_member_3,DLEU7-AS1->DLEU7_antisense_RNA_1,chr13:51381992-51423190:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.83	0.055	FALSE	0	0	0	1	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	4	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	NO	53	1	0.09	0.83	0.011	0.044	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.83	0.055	FALSE	28	14	1	23	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR75--CDON	2	0	WDR75	1146	chr2:190306304:+	CDON	26176	chr11:125893432:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	WDR75->WD_repeat_domain_75,chr2:190306159-190340291:+,CDON->cell_adhesion_associated,_oncogene_regulated,chr11:125825691-125933230:-	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZRANB3--PMS1	2	0	ZRANB3	2907	chr2:136261899:-	PMS1	41256	chr2:190656516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3,PMS1->Oncogene{Bushman},PMS1_homolog_1,_mismatch_repair_system_component,chr2:190649107-190742355:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	3	IGH@	94353	chr14:106330425:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	NO	1	2094	0.8	0	0.011	0.033	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.8	0.044	FALSE	0	0	0	3	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--SEC22B	1	3	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	NO	205	373	0.02	0.01	0.011	0.033	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.044	FALSE	33	36	9	21	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	1	3	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	3	2	0.57	0.67	0.011	0.033	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	0.67	0.044	TRUE	37	101	7	40	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1DP3--FRY	1	2	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	6	0	0.33	1	0.011	0.022	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.033	FALSE	18	26	2	21	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LDLRAD3--PRR5L	1	2	LDLRAD3	5673	chr11:36120011:+	PRR5L	20830	chr11:36350668:+	ONLY_REF_SPLICE	YES	6	0	0.33	1	0.011	0.022	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.033	FALSE	2	24	3	12	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1L12.3--SLC5A12	1	2	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.011	0.022	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.033	TRUE	3	101	0	60	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP13-188A5.1--KLF8	1	2	RP13-188A5.1	1678	chrX:55935233:+	KLF8	9003	chrX:56291613:+	ONLY_REF_SPLICE	YES	6	2	0.33	0.6	0.011	0.022	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.6	0.033	TRUE	1	9	1	5	7	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABCD2--KIF21A	1	1	ABCD2	9768	chr12:39973337:-	KIF21A	20458	chr12:39764063:-	ONLY_REF_SPLICE	YES	116	125	0.02	0.02	0.011	0.011	GTEx_FI:{Brain=[count:4=pct:0.6],Heart=[count:2=pct:0.8],Uterus=[count:2=pct:4.7],Adipose_Tissue=[count:2=pct:0.7]},ABCD2->ATP_binding_cassette_subfamily_D_member_2,chr12:39943835-40013553:-,KIF21A->chr12:39687030-39837192:-,kinesin_family_member_21A	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.022	TRUE	0	0	0	1	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BTN3A2--DNAJC1	1	1	BTN3A2	1194	chr6:26365580:+	DNAJC1	23831	chr10:22095028:-	ONLY_REF_SPLICE	YES	43	2400	0.04	0	0.011	0.011	BTN3A2->butyrophilin_subfamily_3_member_A2,chr6:26365387-26378546:+,DNAJC1->DnaJ_heat_shock_protein_family_(Hsp40)_member_C1,chr10:22045466-22292698:-	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMC2--CDYL2	1	1	CMC2	6180	chr16:81030919:-	CDYL2	19859	chr16:80719026:-	ONLY_REF_SPLICE	YES	1619	14	0	0.12	0.011	0.011	CMC2->C-x9-C_motif_containing_2,chr16:81009698-81053875:-,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.12	0.022	FALSE	0	1	0	1	1	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMC2--CDYL2	1	1	CMC2	2457	chr16:81040339:-	CDYL2	19859	chr16:80719026:-	ONLY_REF_SPLICE	NO	873	14	0	0.12	0.011	0.011	CMC2->C-x9-C_motif_containing_2,chr16:81009698-81053875:-,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.12	0.022	FALSE	0	0	0	5	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DMXL1--TNFAIP8	1	1	DMXL1	30976	chr5:118503559:+	TNFAIP8	68062	chr5:118728511:+	ONLY_REF_SPLICE	YES	61	500	0.03	0	0.011	0.011	NEIGHBORS[19554],DMXL1->Dmx_like_1,chr5:118373467-118584833:+,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KPNA1--ACAD11	1	1	KPNA1	2682	chr3:122215284:-	ACAD11	32257	chr3:132350323:-	ONLY_REF_SPLICE	NO	167	62	0.01	0.03	0.011	0.011	KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1,ACAD11->acyl-CoA_dehydrogenase_family_member_11,chr3:132276982-132379567:-	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LDLRAD3--PRR5L	1	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	34366	chr11:36422547:+	ONLY_REF_SPLICE	NO	6	6	0.25	0.25	0.011	0.011	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.25	0.022	FALSE	12	71	0	11	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIP4K2A--BMI1	1	1	PIP4K2A	1373	chr10:23003112:-	BMI1	27312	chr10:22615360:+	ONLY_REF_SPLICE	YES	391	1724	0.01	0	0.011	0.011	PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	1	1	RP11-353N4.6	11122	chr1:149616111:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	103	0	0.02	1	0.011	0.011	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.022	TRUE	8	13	1	2	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	1	1	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	205	0	0.01	1	0.011	0.011	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.022	FALSE	30	67	4	15	0	FALSE	ACH-000057
OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFAS1--PDCD2L	1	1	ZFAS1	2031	chr20:47895745:+	PDCD2L	13944	chr19:34916895:+	ONLY_REF_SPLICE	YES	752	19	0	0.1	0.011	0.011	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,PDCD2L->chr19:34895289-34917073:+,programmed_cell_death_2-like	OPM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.1	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000057
FADU_UPPER_AERODIGESTIVE_TRACT	TUBD1--VMP1	116	145	TUBD1	12167	chr17:57941025:-	VMP1	33780	chr17:57917129:+	ONLY_REF_SPLICE	YES	10	856	0.96	0.23	1.6166	2.0207	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:-:+:[17235],TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.23	0.96	3.6373	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RFWD3--MLKL	92	5	RFWD3	1096	chr16:74700684:-	MLKL	28398	chr16:74719481:-	ONLY_REF_SPLICE	YES	9	90	0.92	0.52	1.2821	0.0697	LOCAL_REARRANGEMENT:-:[4974],RFWD3->chr16:74655292-74700779:-,ring_finger_and_WD_repeat_domain_3,MLKL->chr16:74705753-74734858:-,mixed_lineage_kinase_domain-like	FADU_UPPER_AERODIGESTIVE_TRACT	0.52	0.92	1.3518	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	81	48	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1288	0.6689	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	1.7977	TRUE	508	994	45	981	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	HUWE1--ARHGAP6	40	93	HUWE1	2755	chrX:53710819:-	ARHGAP6	87055	chrX:11272827:-	ONLY_REF_SPLICE	YES	116	0	0.53	1	0.5574	1.2961	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,ARHGAP6->Rho_GTPase_activating_protein_6,chrX:11136239-11683821:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.53	1	1.8535	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	SELO--TUBGCP6	63	0	SELO	8142	chr22:50655511:+	TUBGCP6	27556	chr22:50656200:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.878	0	LOCAL_INVERSION:+:-:[73],SELO->chr22:50639408-50656045:+,TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.878	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	55	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	314	7	0.16	0.89	0.7665	0.0557	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.16	0.89	0.8222	TRUE	519	3926	326	965	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MECP2--PDK3	34	74	MECP2	3066	chrX:153357642:-	PDK3	25632	chrX:24512859:+	ONLY_REF_SPLICE	YES	57	28	0.65	0.79	0.4738	1.0313	MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2,PDK3->chrX:24483338-24557954:+,pyruvate_dehydrogenase_kinase_3	FADU_UPPER_AERODIGESTIVE_TRACT	0.65	0.79	1.5051	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MECP2--PDK3	44	15	MECP2	1152	chrX:153363061:-	PDK3	25632	chrX:24512859:+	ONLY_REF_SPLICE	YES	9	28	0.87	0.68	0.6132	0.209	MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2,PDK3->chrX:24483338-24557954:+,pyruvate_dehydrogenase_kinase_3	FADU_UPPER_AERODIGESTIVE_TRACT	0.68	0.87	0.8222	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	CSNK1G2--SCAMP4	29	14	CSNK1G2	8180	chr19:1969958:+	SCAMP4	21981	chr19:1914978:+	ONLY_REF_SPLICE	YES	123	1	0.26	0.98	0.4041	0.1951	{Klijn_CCL:Breast=1,Head-Neck=1},LOCAL_REARRANGEMENT:+:[15172],CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,SCAMP4->Oncogene{Bushman},chr19:1905213-1926016:+,secretory_carrier_membrane_protein_4	FADU_UPPER_AERODIGESTIVE_TRACT	0.26	0.98	0.5992	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	HUWE1--ARHGAP6	25	20	HUWE1	1459	chrX:53713215:-	ARHGAP6	87055	chrX:11272827:-	ONLY_REF_SPLICE	YES	27	0	0.62	1	0.3484	0.2787	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,ARHGAP6->Rho_GTPase_activating_protein_6,chrX:11136239-11683821:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.62	1	0.6271	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	AC006486.1--GSK3A	28	1	AC006486.1	1621	chr19:42747547:+	GSK3A	9871	chr19:42741093:-	INCL_NON_REF_SPLICE	YES	0	106	1	0.21	0.3902	0.0139	LOCAL_INVERSION:+:-:[150],AC006486.1->chr19:42746927-42749125:+,GSK3A->chr19:42734338-42746777:-,glycogen_synthase_kinase_3_alpha	FADU_UPPER_AERODIGESTIVE_TRACT	0.21	1	0.4041	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	SUV420H1--CTD-2655K5.1	21	29	SUV420H1	1352	chr11:67980944:-	CTD-2655K5.1	23896	chr11:67897317:+	INCL_NON_REF_SPLICE	YES	172	1	0.23	0.98	0.2927	0.4041	LOCAL_INVERSION:-:+:[24345],SUV420H1->chr11:67922330-67981295:-,CTD-2655K5.1->chr11:67889520-67897985:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.23	0.98	0.6968	TRUE	0	1	0	1	1	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	C16orf72--RP11-473I1.6	25	10	C16orf72	2354	chr16:9186858:+	RP11-473I1.6	12562	chr16:9162369:+	INCL_NON_REF_SPLICE	YES	160	0	0.18	1	0.3484	0.1394	LOCAL_REARRANGEMENT:+:[19236],C16orf72->chr16:9185505-9215497:+,chromosome_16_open_reading_frame_72,RP11-473I1.6->chr16:9162411-9166269:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.18	1	0.4878	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	DIAPH3--KIAA1324L	20	28	DIAPH3	4716	chr13:60667762:-	KIAA1324L	38958	chr7:86594340:-	ONLY_REF_SPLICE	YES	53	5	0.48	0.91	0.2787	0.3902	{Klijn_CCL:Head-Neck=1},DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3,KIAA1324L->KIAA1324-like,chr7:86506222-86689015:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.48	0.91	0.6689	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	PPP6R3--PDE4DIP	20	15	PPP6R3	4527	chr11:68287119:+	PDE4DIP	43823	chr1:145021167:-	ONLY_REF_SPLICE	YES	428	0	0.08	1	0.2787	0.209	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,PDE4DIP->Oncogene{Bushman},chr1:144836157-145076186:-,phosphodiesterase_4D_interacting_protein	FADU_UPPER_AERODIGESTIVE_TRACT	0.08	1	0.4877	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	23	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3205	0.0139	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.3344	FALSE	462	80	0	856	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	ZNF654--HMGB2	23	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3205	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.3205	TRUE	0	0	0	518	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	HINT3--NCOA7	20	10	HINT3	2516	chr6:126288150:+	NCOA7	34565	chr6:126249320:+	ONLY_REF_SPLICE	YES	87	75	0.26	0.29	0.2787	0.1394	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[25661],HINT3->chr6:126277927-126301387:+,histidine_triad_nucleotide_binding_protein_3,NCOA7->chr6:126102307-126252266:+,nuclear_receptor_coactivator_7	FADU_UPPER_AERODIGESTIVE_TRACT	0.26	0.29	0.4181	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	16	23	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	95	80	0.29	0.33	0.223	0.3205	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	FADU_UPPER_AERODIGESTIVE_TRACT	0.29	0.33	0.5435	TRUE	267	562	48	632	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	PHF8--PFKFB1	20	6	PHF8	4673	chrX:54069064:-	PFKFB1	37186	chrX:54989815:-	ONLY_REF_SPLICE	YES	86	0	0.23	1	0.2787	0.0836	PHF8->PHD_finger_protein_8,chrX:53963109-54075391:-,PFKFB1->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_1,chrX:54959394-55024967:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.23	1	0.3623	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MICALL1--EIF3L	15	14	MICALL1	12217	chr22:38323833:+	EIF3L	34165	chr22:38273681:+	ONLY_REF_SPLICE	YES	164	894	0.15	0.03	0.209	0.1951	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[16250],MICALL1->MICAL_like_1,chr22:38301664-38338829:+,EIF3L->chr22:38244875-38285414:+,eukaryotic_translation_initiation_factor_3_subunit_L	FADU_UPPER_AERODIGESTIVE_TRACT	0.03	0.15	0.4041	TRUE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	TUBD1--VMP1	7	43	TUBD1	10970	chr17:57943970:-	VMP1	33780	chr17:57917129:+	ONLY_REF_SPLICE	YES	81	856	0.38	0.06	0.0976	0.5993	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:-:+:[17235],TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.06	0.38	0.6969	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	GSK3A--NUCB1	14	12	GSK3A	3671	chr19:42744107:-	NUCB1	17625	chr19:49414406:+	ONLY_REF_SPLICE	YES	105	489	0.2	0.05	0.1951	0.1672	GSK3A->chr19:42734338-42746777:-,glycogen_synthase_kinase_3_alpha,NUCB1->chr19:49403307-49426629:+,nucleobindin_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.05	0.2	0.3623	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	16	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.223	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.223	FALSE	230	193	14	283	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	NLN--ERBB2IP	11	14	NLN	1219	chr5:65018241:+	ERBB2IP	36157	chr5:65307877:+	ONLY_REF_SPLICE	YES	61	91	0.29	0.22	0.1533	0.1951	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[54750],NLN->chr5:65018023-65167553:+,neurolysin,ERBB2IP->chr5:65222303-65378377:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.22	0.29	0.3484	FALSE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	ALDOA--KRT17	13	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1812	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.1812	TRUE	0	0	0	10	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	12	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1672	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.1672	FALSE	230	193	14	283	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	AC006486.1--GSK3A	9	10	AC006486.1	1761	chr19:42747687:+	GSK3A	9871	chr19:42741093:-	INCL_NON_REF_SPLICE	YES	1	106	0.95	0.15	0.1254	0.1394	LOCAL_INVERSION:+:-:[150],AC006486.1->chr19:42746927-42749125:+,GSK3A->chr19:42734338-42746777:-,glycogen_synthase_kinase_3_alpha	FADU_UPPER_AERODIGESTIVE_TRACT	0.15	0.95	0.2648	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	11	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	107	1	0.11	0.1533	0.0279	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.1812	TRUE	465	1949	224	605	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	KRT5--MT-CO3	9	9	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	7772	12875	0	0	0.1254	0.1254	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	FADU_UPPER_AERODIGESTIVE_TRACT	0	0	0.2508	FALSE	0	0	0	18	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	SLC39A1--RP11-603J24.7	9	5	SLC39A1	3809	chr1:153934698:-	RP11-603J24.7	9592	chr12:56374695:-	INCL_NON_REF_SPLICE	YES	810	6	0.02	0.7	0.1254	0.0697	SLC39A1->chr1:153931575-153940188:-,solute_carrier_family_39_member_1,RP11-603J24.7->chr12:56374216-56374819:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.02	0.7	0.1951	TRUE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	SUV420H1--CTD-2655K5.1	3	29	SUV420H1	1691	chr11:67980605:-	CTD-2655K5.1	23896	chr11:67897317:+	INCL_NON_REF_SPLICE	YES	278	1	0.1	0.97	0.0418	0.4041	LOCAL_INVERSION:-:+:[24345],SUV420H1->chr11:67922330-67981295:-,CTD-2655K5.1->chr11:67889520-67897985:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.1	0.97	0.4459	TRUE	0	1	0	1	1	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	6	16	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	94	81	0.19	0.21	0.0836	0.223	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	FADU_UPPER_AERODIGESTIVE_TRACT	0.19	0.21	0.3066	TRUE	267	562	48	632	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MRPS6--SLC37A1	7	12	MRPS6	1522	chr21:35446045:+	SLC37A1	22670	chr21:43954808:+	ONLY_REF_SPLICE	YES	498	32	0.04	0.37	0.0976	0.1672	MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,SLC37A1->chr21:43916118-44001550:+,solute_carrier_family_37_member_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.04	0.37	0.2648	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	CHKA--PPM1L	8	4	CHKA	2767	chr11:67864486:-	PPM1L	25774	chr3:160679524:+	ONLY_REF_SPLICE	YES	65	10	0.16	0.55	0.1115	0.0557	CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,PPM1L->chr3:160473390-160796695:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1L	FADU_UPPER_AERODIGESTIVE_TRACT	0.16	0.55	0.1672	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	FTH1--ACTG1	8	4	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	10373	9	0	0.57	0.1115	0.0557	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	FADU_UPPER_AERODIGESTIVE_TRACT	0	0.57	0.1672	TRUE	0	0	0	64	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	9	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1254	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.1254	FALSE	230	198	14	283	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	HSP90AB1--MT-RNR2	8	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	5005	0	0	1	0.1115	0.0279	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	FADU_UPPER_AERODIGESTIVE_TRACT	0	1	0.1394	FALSE	13	9	0	364	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RRAGA--FAM154A	6	10	RRAGA	1313	chr9:19049684:+	FAM154A	7032	chr9:18950935:-	INCL_NON_REF_SPLICE	YES	158	0	0.09	1	0.0836	0.1394	LOCAL_INVERSION:+:-:[16121],RRAGA->Ras_related_GTP_binding_A,chr9:19049372-19051019:+,FAM154A->chr9:18927656-19033251:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.223	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	LGALS3BP--CYTH1	6	8	LGALS3BP	6881	chr17:76969052:-	CYTH1	18225	chr17:76705814:-	ONLY_REF_SPLICE	YES	942	52	0.01	0.21	0.0836	0.1115	{Klijn_CCL:Head-Neck=1},LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,CYTH1->chr17:76670130-76778379:-,cytohesin_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.01	0.21	0.1951	TRUE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	7	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0976	0.0557	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.1533	FALSE	416	2512	207	587	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	TDRD3--DMTF1	6	8	TDRD3	17365	chr13:61109367:+	DMTF1	35744	chr7:86810625:+	ONLY_REF_SPLICE	YES	21	54	0.4	0.21	0.0836	0.1115	GTEx&tcga_normals:1/3694=0.03%,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3,DMTF1->Oncogene{Bushman},chr7:86781677-86825653:+,cyclin_D_binding_myb_like_transcription_factor_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.21	0.4	0.1951	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	AC073343.13--USP42	7	2	AC073343.13	2135	chr7:6704739:+	USP42	30261	chr7:6199081:+	ONLY_REF_SPLICE	YES	0	34	1	0.21	0.0976	0.0279	AC073343.13->chr7:6703605-6748532:+,USP42->chr7:6144515-6201195:+,ubiquitin_specific_peptidase_42	FADU_UPPER_AERODIGESTIVE_TRACT	0.21	1	0.1255	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MRPS6--SLC37A1	3	17	MRPS6	8835	chr21:35515028:+	SLC37A1	22670	chr21:43954808:+	INCL_NON_REF_SPLICE	YES	240	32	0.08	0.38	0.0418	0.2369	MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,SLC37A1->chr21:43916118-44001550:+,solute_carrier_family_37_member_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.08	0.38	0.2787	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	FTH1--ACTG1	6	4	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	10508	9	0	0.53	0.0836	0.0557	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	FADU_UPPER_AERODIGESTIVE_TRACT	0	0.53	0.1393	TRUE	0	0	0	64	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	TUBD1--VMP1	2	20	TUBD1	9829	chr17:57951900:-	VMP1	33780	chr17:57917129:+	ONLY_REF_SPLICE	YES	155	856	0.12	0.03	0.0279	0.2787	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:-:+:[17235],TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.03	0.12	0.3066	TRUE	0	0	0	2	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	PPP6R3--PDE4DIP	3	15	PPP6R3	5723	chr11:68290157:+	PDE4DIP	43823	chr1:145021167:-	ONLY_REF_SPLICE	YES	433	0	0.04	1	0.0418	0.209	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,PDE4DIP->Oncogene{Bushman},chr1:144836157-145076186:-,phosphodiesterase_4D_interacting_protein	FADU_UPPER_AERODIGESTIVE_TRACT	0.04	1	0.2508	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MRPS6--SLC37A1	3	14	MRPS6	7514	chr21:35497780:+	SLC37A1	22670	chr21:43954808:+	ONLY_REF_SPLICE	YES	390	32	0.04	0.35	0.0418	0.1951	MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,SLC37A1->chr21:43916118-44001550:+,solute_carrier_family_37_member_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.04	0.35	0.2369	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	6	2	MT-ND4	1540	chrM:11299:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19352	53	0	0.13	0.0836	0.0279	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FADU_UPPER_AERODIGESTIVE_TRACT	0	0.13	0.1115	FALSE	231	217	16	283	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	KRT5--MT-CO3	4	9	KRT5	1489	chr12:52913983:-	MT-CO3	10505	chrM:9598:+	INCL_NON_REF_SPLICE	YES	8140	12715	0	0	0.0557	0.1254	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	FADU_UPPER_AERODIGESTIVE_TRACT	0	0	0.1811	FALSE	0	0	0	18	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	HSP90AB1--MT-RNR2	5	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	5037	0	0	1	0.0697	0.0279	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	FADU_UPPER_AERODIGESTIVE_TRACT	0	1	0.0976	FALSE	13	9	0	364	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	5	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9685	23242	0	0	0.0697	0.0139	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	FADU_UPPER_AERODIGESTIVE_TRACT	0	0	0.0836	FALSE	183	104	9	328	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	1	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17179	0	0	1	0.0697	0.0139	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FADU_UPPER_AERODIGESTIVE_TRACT	0	1	0.0836	FALSE	231	217	16	283	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14245	7	0	0.46	0.0697	0.0139	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FADU_UPPER_AERODIGESTIVE_TRACT	0	0.46	0.0836	FALSE	231	205	14	283	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	1	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	17125	0	0	1	0.0697	0.0139	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FADU_UPPER_AERODIGESTIVE_TRACT	0	1	0.0836	FALSE	231	217	16	283	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0697	0.0139	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.86	1	0.0836	FALSE	292	1546	117	613	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--ARHGAP6	4	5	RP11-120D5.1	4510	chrX:11074056:-	ARHGAP6	22334	chrX:11272827:-	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0557	0.0697	LOCAL_REARRANGEMENT:-:[6978],RP11-120D5.1->chrX:10865996-11129261:-,ARHGAP6->Rho_GTPase_activating_protein_6,chrX:11136239-11683821:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.82	1	0.1254	TRUE	0	1	0	1	1	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	TRIM26--MT-ND4L	5	1	TRIM26	11370	chr6:30152598:-	MT-ND4L	14738	chrM:10471:+	INCL_NON_REF_SPLICE	YES	106	0	0.05	1	0.0697	0.0139	TRIM26->chr6:30152232-30181204:-,tripartite_motif_containing_26,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FADU_UPPER_AERODIGESTIVE_TRACT	0.05	1	0.0836	FALSE	0	0	0	3	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	C16orf72--RP11-473I1.6	4	4	C16orf72	2354	chr16:9186858:+	RP11-473I1.6	13704	chr16:9164710:+	ONLY_REF_SPLICE	YES	160	0	0.05	1	0.0557	0.0557	LOCAL_REARRANGEMENT:+:[19236],C16orf72->chr16:9185505-9215497:+,chromosome_16_open_reading_frame_72,RP11-473I1.6->chr16:9162411-9166269:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.05	1	0.1114	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	4	4	MT-ATP6	1265	chrM:8791:+	MT-CO1	4998	chrM:6220:+	INCL_NON_REF_SPLICE	NO	16464	19722	0	0	0.0557	0.0557	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	FADU_UPPER_AERODIGESTIVE_TRACT	0	0	0.1114	FALSE	183	104	9	328	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	TBC1D22A--ATXN10	3	8	TBC1D22A	18901	chr22:47433094:+	ATXN10	44818	chr22:46238871:+	ONLY_REF_SPLICE	YES	285	841	0.04	0.01	0.0418	0.1115	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,ATXN10->ataxin_10,chr22:46067678-46241187:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.01	0.04	0.1533	TRUE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	4	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	63	1	0.1	0.0557	0.0418	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.1	1	0.0975	TRUE	458	1351	185	561	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	C6orf132--TRERF1	4	2	C6orf132	1320	chr6:42110038:-	TRERF1	32761	chr6:42204149:-	ONLY_REF_SPLICE	YES	172	40	0.03	0.13	0.0557	0.0279	LOCAL_REARRANGEMENT:-:[82312],C6orf132->chr6:42068856-42110357:-,chromosome_6_open_reading_frame_132,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.03	0.13	0.0836	TRUE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	6	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	13840	0	0	1	0.0418	0.0836	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FADU_UPPER_AERODIGESTIVE_TRACT	0	1	0.1254	FALSE	231	217	16	283	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	6	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13023	53	0	0.15	0.0418	0.0836	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FADU_UPPER_AERODIGESTIVE_TRACT	0	0.15	0.1254	FALSE	231	217	16	283	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	6	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2021	53	0	0.15	0.0418	0.0836	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FADU_UPPER_AERODIGESTIVE_TRACT	0	0.15	0.1254	FALSE	216	209	16	281	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	14316	0	0	1	0.0418	0.0697	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FADU_UPPER_AERODIGESTIVE_TRACT	0	1	0.1115	FALSE	231	217	16	283	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	ELMSAN1--MT-ND4L	4	0	ELMSAN1	10751	chr14:74196396:-	MT-ND4L	27529	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0557	0	ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0557	FALSE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MICALL1--EIF3L	1	12	MICALL1	12211	chr22:38323827:+	EIF3L	34165	chr22:38273681:+	ONLY_REF_SPLICE	YES	162	894	0.07	0.01	0.0139	0.1672	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[16250],MICALL1->MICAL_like_1,chr22:38301664-38338829:+,EIF3L->chr22:38244875-38285414:+,eukaryotic_translation_initiation_factor_3_subunit_L	FADU_UPPER_AERODIGESTIVE_TRACT	0.01	0.07	0.1811	TRUE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MECP2--PDK3	2	7	MECP2	1152	chrX:153363061:-	PDK3	26774	chrX:24516946:+	ONLY_REF_SPLICE	YES	9	41	0.5	0.18	0.0279	0.0976	MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2,PDK3->chrX:24483338-24557954:+,pyruvate_dehydrogenase_kinase_3	FADU_UPPER_AERODIGESTIVE_TRACT	0.18	0.5	0.1255	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	TBC1D22A--ATXN10	2	7	TBC1D22A	17773	chr22:47393605:+	ATXN10	44818	chr22:46238871:+	ONLY_REF_SPLICE	YES	292	841	0.03	0.01	0.0279	0.0976	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,ATXN10->ataxin_10,chr22:46067678-46241187:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.01	0.03	0.1255	TRUE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	CSNK1G2--SCAMP4	1	10	CSNK1G2	8180	chr19:1969958:+	SCAMP4	23547	chr19:1917693:+	ONLY_REF_SPLICE	YES	123	41	0.08	0.21	0.0139	0.1394	{Klijn_CCL:Breast=1,Head-Neck=1},LOCAL_REARRANGEMENT:+:[15172],CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,SCAMP4->Oncogene{Bushman},chr19:1905213-1926016:+,secretory_carrier_membrane_protein_4	FADU_UPPER_AERODIGESTIVE_TRACT	0.08	0.21	0.1533	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	DIAPH3--KIAA1324L	1	10	DIAPH3	4716	chr13:60667762:-	KIAA1324L	40079	chr7:86577238:-	ONLY_REF_SPLICE	NO	53	12	0.17	0.48	0.0139	0.1394	{Klijn_CCL:Head-Neck=1},DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3,KIAA1324L->KIAA1324-like,chr7:86506222-86689015:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.17	0.48	0.1533	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	KRT5--UBB	3	2	KRT5	1777	chr12:52913695:-	UBB	10448	chr17:16284446:+	INCL_NON_REF_SPLICE	YES	11497	8	0	0.38	0.0418	0.0279	GTEx&tcga_normals:2/3694=0.05%,KRT5->chr12:52908359-52914471:-,keratin_5,UBB->chr17:16284112-16286059:+,ubiquitin_B	FADU_UPPER_AERODIGESTIVE_TRACT	0	0.38	0.0697	FALSE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	TUBD1--VMP1	1	10	TUBD1	8664	chr17:57955464:-	VMP1	33780	chr17:57917129:+	ONLY_REF_SPLICE	YES	154	856	0.07	0.01	0.0139	0.1394	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:-:+:[17235],TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.01	0.07	0.1533	TRUE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	HAT1--SLC25A12	3	1	HAT1	6391	chr2:172809519:+	SLC25A12	22193	chr2:172749768:-	ONLY_REF_SPLICE	YES	560	1	0.01	0.8	0.0418	0.0139	NEIGHBORS_OVERLAP:+:-:[69641],HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1,SLC25A12->chr2:172640880-172864766:-,solute_carrier_family_25_member_12	FADU_UPPER_AERODIGESTIVE_TRACT	0.01	0.8	0.0557	FALSE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	HUWE1--ARHGAP6	1	9	HUWE1	1141	chrX:53713533:-	ARHGAP6	87055	chrX:11272827:-	ONLY_REF_SPLICE	YES	30	0	0.25	1	0.0139	0.1254	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,ARHGAP6->Rho_GTPase_activating_protein_6,chrX:11136239-11683821:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.25	1	0.1393	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	LGALS3BP--CYTH1	2	5	LGALS3BP	5450	chr17:76970770:-	CYTH1	18225	chr17:76705814:-	ONLY_REF_SPLICE	YES	1194	52	0.01	0.12	0.0279	0.0697	{Klijn_CCL:Head-Neck=1},LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,CYTH1->chr17:76670130-76778379:-,cytohesin_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.01	0.12	0.0976	FALSE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	9506	22494	0	0	0.0418	0.0139	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	FADU_UPPER_AERODIGESTIVE_TRACT	0	0	0.0557	FALSE	183	104	9	328	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	1	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	17457	1464	0	0	0.0418	0.0139	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FADU_UPPER_AERODIGESTIVE_TRACT	0	0	0.0557	FALSE	231	205	14	283	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	SCARB1--UBC	3	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	273	101	0.01	0.04	0.0418	0.0139	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	FADU_UPPER_AERODIGESTIVE_TRACT	0.01	0.04	0.0557	FALSE	55	66	6	101	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	ALDOA--KRT17	3	0	ALDOA	7448	chr16:30077220:+	KRT17	15339	chr17:39780762:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	10	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MT-CO1--SUMO2	3	0	MT-CO1	1592	chrM:6495:+	SUMO2	5567	chr17:73179054:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	FALSE	0	0	0	12	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--MID1	3	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	FALSE	0	48	1	163	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	SETD8--CDK2AP1	3	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	18	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	C16orf72--RP11-473I1.6	2	3	C16orf72	2354	chr16:9186858:+	RP11-473I1.6	14742	chr16:9165748:+	ONLY_REF_SPLICE	YES	160	8	0.03	0.38	0.0279	0.0418	LOCAL_REARRANGEMENT:+:[19236],C16orf72->chr16:9185505-9215497:+,chromosome_16_open_reading_frame_72,RP11-473I1.6->chr16:9162411-9166269:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.03	0.38	0.0697	TRUE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	GNGT1--AC002076.10	2	2	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0279	0.0279	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.0558	FALSE	0	28	0	37	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	VTI1A--RP11-57H14.3	2	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	88	0	0.04	1	0.0279	0.0279	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.04	1	0.0558	FALSE	272	151	14	158	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.23	1	0.0279	0.0139	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.23	1	0.0418	FALSE	164	806	69	479	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--ARHGAP6	1	5	RP11-120D5.1	2349	chrX:11125021:-	ARHGAP6	22334	chrX:11272827:-	ONLY_REF_SPLICE	YES	6	0	0.5	1	0.0139	0.0697	LOCAL_REARRANGEMENT:-:[6978],RP11-120D5.1->chrX:10865996-11129261:-,ARHGAP6->Rho_GTPase_activating_protein_6,chrX:11136239-11683821:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.5	1	0.0836	TRUE	0	1	0	1	1	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	SLC16A5--KCTD2	2	1	SLC16A5	9370	chr17:73100275:+	KCTD2	24360	chr17:73058215:+	ONLY_REF_SPLICE	YES	38	82	0.07	0.04	0.0279	0.0139	LOCAL_REARRANGEMENT:+:[21838],SLC16A5->chr17:73083822-73102257:+,solute_carrier_family_16_member_5,KCTD2->Oncogene{Bushman},chr17:73028670-73061984:+,potassium_channel_tetramerization_domain_containing_2	FADU_UPPER_AERODIGESTIVE_TRACT	0.04	0.07	0.0418	TRUE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	C17orf76-AS1--EIF4G2	2	0	C17orf76-AS1	1593	chr17:16342728:+	EIF4G2	21226	chr11:10822634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	C17orf76-AS1->chr17:16342136-16381992:+,EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	2	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	CAPN15--TMEM8A	2	0	CAPN15	2366	chr16:583998:+	TMEM8A	22194	chr16:427848:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	GTEx_FI:{Skin=[count:1=pct:0.3],Testis=[count:1=pct:1.0]},GTEx_v2:{count=9;pct=0.10%;dist=Testis=3,Skin_-_Sun_Exposed_(Lower_leg)=2,Stomach=1,Liver=1,Whole_Blood=1,Cells_-_Transformed_fibroblasts=1},CAPN15->calpain_15,chr16:577717-604636:+,TMEM8A->chr16:420773-437113:-,transmembrane_protein_8A	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	2	12	0	2	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	CHURC1--RAB15	2	0	CHURC1	2310	chr14:65390844:+	RAB15	17423	chr14:65419289:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_INVERSION:+:-:[1223],CHURC1->chr14:65381079-65411309:+,churchill_domain_containing_1,RAB15->RAB15,_member_RAS_oncogene_family,chr14:65412532-65439494:-	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	CLSTN1--CTNNBIP1	2	0	CLSTN1	1884	chr1:9883701:-	CTNNBIP1	29326	chr1:9910834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[23750],CLSTN1->calsyntenin_1,chr1:9789084-9884584:-,CTNNBIP1->catenin_beta_interacting_protein_1,chr1:9908334-9970394:-	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MECP2--PDK3	2	0	MECP2	1152	chrX:153363061:-	PDK3	30302	chrX:24537050:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2,PDK3->chrX:24483338-24557954:+,pyruvate_dehydrogenase_kinase_3	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	PPM1D--CASC8	2	0	PPM1D	1704	chr17:58678247:+	CASC8	21457	chr8:128302305:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	PPM1D->Oncogene{Bushman},chr17:58677544-58741849:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1D,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--ARHGAP6	2	0	RP11-120D5.1	4510	chrX:11074056:-	ARHGAP6	23494	chrX:11215116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:-:[6978],RP11-120D5.1->chrX:10865996-11129261:-,ARHGAP6->Rho_GTPase_activating_protein_6,chrX:11136239-11683821:-	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RP11-353N4.6--RP11-403I13.4	2	0	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	61	154	6	19	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	SPIDR--EIF3E	2	0	SPIDR	7740	chr8:48206619:+	EIF3E	47723	chr8:109254142:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	WIPF2--RAPGEFL1	2	0	WIPF2	1617	chr17:38376172:+	RAPGEFL1	29949	chr17:38349615:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:+:[23648],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	WWOX--VAT1L	2	0	WWOX	10605	chr16:78198186:+	VAT1L	42429	chr16:78005747:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	6	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	ZNF76--PSMB1	2	0	ZNF76	1819	chr6:35227504:+	PSMB1	19676	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	ZNF76->chr6:35226686-35263762:+,zinc_finger_protein_76,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	CAMK2G--C10orf55	1	3	CAMK2G	1189	chr10:75634155:-	C10orf55	30304	chr10:75672833:-	ONLY_REF_SPLICE	YES	111	0	0.03	1	0.0139	0.0418	LOCAL_REARRANGEMENT:-:[35384],CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-,C10orf55->chr10:75669727-75682535:-,chromosome_10_open_reading_frame_55	FADU_UPPER_AERODIGESTIVE_TRACT	0.03	1	0.0557	TRUE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	CAMK2G--C10orf55	1	3	CAMK2G	2597	chr10:75632747:-	C10orf55	30304	chr10:75672833:-	ONLY_REF_SPLICE	YES	145	0	0.03	1	0.0139	0.0418	LOCAL_REARRANGEMENT:-:[35384],CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-,C10orf55->chr10:75669727-75682535:-,chromosome_10_open_reading_frame_55	FADU_UPPER_AERODIGESTIVE_TRACT	0.03	1	0.0557	TRUE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	SUV420H1--CTD-2655K5.1	1	3	SUV420H1	1352	chr11:67980944:-	CTD-2655K5.1	24225	chr11:67897646:+	ONLY_REF_SPLICE	NO	172	17	0.02	0.19	0.0139	0.0418	LOCAL_INVERSION:-:+:[24345],SUV420H1->chr11:67922330-67981295:-,CTD-2655K5.1->chr11:67889520-67897985:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.02	0.19	0.0557	TRUE	0	1	0	1	1	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	GNGT1--AC002076.10	1	2	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	2	1	0.6	0.75	0.0139	0.0279	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.6	0.75	0.0418	FALSE	0	10	0	30	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	IFT140--HN1L	1	2	IFT140	21093	chr16:1607936:-	HN1L	40011	chr16:1735440:+	ONLY_REF_SPLICE	YES	36	124	0.08	0.02	0.0139	0.0279	LOCAL_INVERSION:-:+:[66146],IFT140->chr16:1560428-1662111:-,intraflagellar_transport_140,HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like	FADU_UPPER_AERODIGESTIVE_TRACT	0.02	0.08	0.0418	TRUE	0	2	0	2	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	PTPRS--DAGLA	1	2	PTPRS	1140	chr19:5340675:-	DAGLA	43369	chr11:61487584:+	ONLY_REF_SPLICE	YES	17	2	0.15	0.6	0.0139	0.0279	PTPRS->chr19:5158506-5340814:-,protein_tyrosine_phosphatase,_receptor_type_S,DAGLA->chr11:61447905-61514473:+,diacylglycerol_lipase_alpha	FADU_UPPER_AERODIGESTIVE_TRACT	0.15	0.6	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0.0279	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	FALSE	93	270	15	244	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	AC079610.1--IKZF2	1	1	AC079610.1	2144	chr2:213768105:-	IKZF2	11714	chr2:214013368:-	ONLY_REF_SPLICE	YES	1	22	0.67	0.08	0.0139	0.0139	NEIGHBORS_OVERLAP:-:-:[21840],AC079610.1->chr2:213446081-213886269:-,IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.08	0.67	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	ATP2C1--ALG1L2	1	1	ATP2C1	5569	chr3:130613619:+	ALG1L2	42429	chr3:129810104:+	ONLY_REF_SPLICE	YES	215	0	0.01	1	0.0139	0.0139	ATP2C1->ATPase_secretory_pathway_Ca2+_transporting_1,chr3:130569439-130735556:+,ALG1L2->ALG1,_chitobiosyldiphosphodolichol_beta-mannosyltransferase-like_2,chr3:129800674-129832070:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.0278	FALSE	0	0	0	2	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	C17orf76-AS1--DAG1	1	1	C17orf76-AS1	1593	chr17:16342728:+	DAG1	21282	chr3:49547852:+	ONLY_REF_SPLICE	YES	213	320	0.01	0.01	0.0139	0.0139	C17orf76-AS1->chr17:16342136-16381992:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.01	0.01	0.0278	FALSE	0	0	0	2	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	CCT2--FRS2	1	1	CCT2	10239	chr12:69992201:+	FRS2	28572	chr12:69965898:+	ONLY_REF_SPLICE	NO	892	57	0	0.03	0.0139	0.0139	LOCAL_REARRANGEMENT:+:[5552],CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+,FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2	FADU_UPPER_AERODIGESTIVE_TRACT	0	0.03	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	CEP170--SDCCAG8	1	1	CEP170	5453	chr1:243385026:-	SDCCAG8	44257	chr1:243468015:+	ONLY_REF_SPLICE	YES	61	50	0.03	0.04	0.0139	0.0139	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Artery_-_Coronary=1,Nerve_-_Tibial=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:-:+:[670],CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	FADU_UPPER_AERODIGESTIVE_TRACT	0.03	0.04	0.0278	TRUE	0	1	0	1	1	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	CMIP--LARP4B	1	1	CMIP	13987	chr16:81697954:+	LARP4B	39241	chr10:931700:-	ONLY_REF_SPLICE	YES	296	3	0.01	0.4	0.0139	0.0139	CMIP->c-Maf_inducing_protein,chr16:81478775-81745367:+,LARP4B->La_ribonucleoprotein_domain_family_member_4B,chr10:855484-977564:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.01	0.4	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	DMWD--SYMPK	1	1	DMWD	2670	chr19:46294163:-	SYMPK	41209	chr19:46319441:-	ONLY_REF_SPLICE	YES	36	38	0.05	0.05	0.0139	0.0139	LOCAL_REARRANGEMENT:-:[22608],DMWD->chr19:46286205-46296060:-,dystrophia_myotonica,_WD_repeat_containing,SYMPK->chr19:46318668-46366548:-,symplekin	FADU_UPPER_AERODIGESTIVE_TRACT	0.05	0.05	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	IKZF2--ZC3H13	1	1	IKZF2	5217	chr2:214012432:-	ZC3H13	29717	chr13:46619648:-	ONLY_REF_SPLICE	YES	29	71	0.06	0.03	0.0139	0.0139	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	FADU_UPPER_AERODIGESTIVE_TRACT	0.03	0.06	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	INVS--MSANTD3	1	1	INVS	4008	chr9:102866909:+	MSANTD3	32397	chr9:103204188:+	ONLY_REF_SPLICE	YES	47	12	0.04	0.14	0.0139	0.0139	INVS->chr9:102861538-103063282:+,inversin,MSANTD3->Myb/SANT_DNA_binding_domain_containing_3,chr9:103189438-103213511:+	FADU_UPPER_AERODIGESTIVE_TRACT	0.04	0.14	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	MIR205HG--C9orf3	1	1	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	NO	191	42	0.01	0.05	0.0139	0.0139	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	FADU_UPPER_AERODIGESTIVE_TRACT	0.01	0.05	0.0278	FALSE	86	303	14	25	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	NEU1--SLC44A4	1	1	NEU1	1908	chr6:31829776:-	SLC44A4	10944	chr6:31844859:-	ONLY_REF_SPLICE	YES	122	0	0.02	1	0.0139	0.0139	LOCAL_REARRANGEMENT:-:[286],NEU1->chr6:31825436-31830683:-,neuraminidase_1_(lysosomal_sialidase),SLC44A4->Oncogene{Bushman},chr6:31830969-31846823:-,solute_carrier_family_44_member_4	FADU_UPPER_AERODIGESTIVE_TRACT	0.02	1	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	7	0	0.22	1	0.0139	0.0139	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.22	1	0.0278	FALSE	125	705	46	456	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	7	1	0.22	0.67	0.0139	0.0139	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	FADU_UPPER_AERODIGESTIVE_TRACT	0.22	0.67	0.0278	FALSE	7	44	2	41	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	PPP6R3--PDE4DIP	1	1	PPP6R3	1110	chr11:68228295:+	PDE4DIP	43823	chr1:145021167:-	ONLY_REF_SPLICE	NO	12	0	0.14	1	0.0139	0.0139	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,PDE4DIP->Oncogene{Bushman},chr1:144836157-145076186:-,phosphodiesterase_4D_interacting_protein	FADU_UPPER_AERODIGESTIVE_TRACT	0.14	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RP11-108K3.1--GLDN	1	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0.0139	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	FADU_UPPER_AERODIGESTIVE_TRACT	1	1	0.0278	FALSE	1	20	0	46	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RP11-1094M14.11--ITSN1	1	1	RP11-1094M14.11	1382	chr17:33895520:+	ITSN1	13337	chr21:35107349:+	ONLY_REF_SPLICE	YES	76	78	0.03	0.03	0.0139	0.0139	RP11-1094M14.11->chr17:33895139-33901811:+,ITSN1->chr21:35014706-35272165:+,intersectin_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.03	0.03	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--MID1	1	1	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	31	0.67	0.06	0.0139	0.0139	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	FADU_UPPER_AERODIGESTIVE_TRACT	0.06	0.67	0.0278	FALSE	2	31	0	60	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	SERBP1--MYL6B	1	1	SERBP1	3131	chr1:67891818:-	MYL6B	22708	chr12:56551252:+	ONLY_REF_SPLICE	YES	2124	87	0	0.02	0.0139	0.0139	SERBP1->SERPINE1_mRNA_binding_protein_1,chr1:67873493-67896098:-,MYL6B->chr12:56546040-56553431:+,myosin_light_chain_6B	FADU_UPPER_AERODIGESTIVE_TRACT	0	0.02	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	SNHG3--RPS12	1	1	SNHG3	3181	chr1:28834672:+	RPS12	10698	chr6:133137600:+	ONLY_REF_SPLICE	YES	34	4202	0.06	0	0.0139	0.0139	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,RPS12->chr6:133135580-133138703:+,ribosomal_protein_S12	FADU_UPPER_AERODIGESTIVE_TRACT	0	0.06	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	TCEA1--ATP6V1H	1	1	TCEA1	1467	chr8:54934623:-	ATP6V1H	37067	chr8:54656250:-	ONLY_REF_SPLICE	NO	1800	334	0	0.01	0.0139	0.0139	TCEA1->Oncogene{Bushman},chr8:54879112-54935089:-,transcription_elongation_factor_A1,ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-	FADU_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0278	FALSE	1	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	UQCC2--IP6K3	1	1	UQCC2	2254	chr6:33669123:-	IP6K3	13879	chr6:33703432:-	ONLY_REF_SPLICE	YES	289	0	0.01	1	0.0139	0.0139	LOCAL_REARRANGEMENT:-:[9940],UQCC2->chr6:33662070-33679504:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_2,IP6K3->chr6:33689444-33714762:-,inositol_hexakisphosphate_kinase_3	FADU_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000846
FADU_UPPER_AERODIGESTIVE_TRACT	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	3488	213	0	0.01	0.0139	0.0139	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	FADU_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0278	FALSE	6	50	7	115	0	FALSE	ACH-000846
ACCMESO1_PLEURA	TIMM23B--LINC00843	170	53	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.4055	0.75	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ACCMESO1_PLEURA	1	1	3.1555	TRUE	508	994	45	981	0	FALSE	ACH-000086
ACCMESO1_PLEURA	TIMM23--RP11-464F9.1	95	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	526	2	0.16	0.98	1.3443	0.0566	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ACCMESO1_PLEURA	0.16	0.98	1.4009	TRUE	519	3926	326	965	0	FALSE	ACH-000086
ACCMESO1_PLEURA	GPATCH8--LSM12	69	54	GPATCH8	2180	chr17:42552197:-	LSM12	27477	chr17:42117624:-	ONLY_REF_SPLICE	YES	21	191	0.85	0.39	0.9764	0.7641	GPATCH8->G-patch_domain_containing_8,chr17:42472652-42580798:-,LSM12->LSM12_homolog,chr17:42112003-42144987:-	ACCMESO1_PLEURA	0.39	0.85	1.7405	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	MT-TA--MT-TC	41	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5802	0.0708	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ACCMESO1_PLEURA	1	1	0.651	FALSE	462	80	0	856	0	FALSE	ACH-000086
ACCMESO1_PLEURA	C15orf57--CBX3	30	44	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	78	109	0.49	0.4	0.4245	0.6226	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	ACCMESO1_PLEURA	0.4	0.49	1.0471	TRUE	267	562	48	632	0	FALSE	ACH-000086
ACCMESO1_PLEURA	C15orf57--CBX3	22	39	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	78	111	0.44	0.35	0.3113	0.5519	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	ACCMESO1_PLEURA	0.35	0.44	0.8632	TRUE	267	562	48	632	0	FALSE	ACH-000086
ACCMESO1_PLEURA	AL589743.1--RP11-536C10.17	29	2	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	19	0	0.62	1	0.4104	0.0283	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	ACCMESO1_PLEURA	0.62	1	0.4387	TRUE	0	33	0	45	33	FALSE	ACH-000086
ACCMESO1_PLEURA	AP000525.9--LA16c-60G3.6	29	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	20	0	0.61	1	0.4104	0.0283	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	ACCMESO1_PLEURA	0.61	1	0.4387	TRUE	0	42	0	133	42	FALSE	ACH-000086
ACCMESO1_PLEURA	ASPH--RP11-32K4.1	23	22	ASPH	1328	chr8:62626828:-	RP11-32K4.1	54939	chr8:65046071:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.3255	0.3113	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,RP11-32K4.1->chr8:64599737-65281115:-	ACCMESO1_PLEURA	0.98	1	0.6368	TRUE	0	1	0	1	1	TRUE	ACH-000086
ACCMESO1_PLEURA	ZNF654--HMGB2	27	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3821	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	ACCMESO1_PLEURA	1	1	0.3821	TRUE	0	0	0	518	0	FALSE	ACH-000086
ACCMESO1_PLEURA	MT-TA--MT-TC	23	2	MT-TA	1053	chrM:5603:-	MT-TC	4081	chrM:5815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3255	0.0283	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ACCMESO1_PLEURA	1	1	0.3538	FALSE	462	80	0	856	0	FALSE	ACH-000086
ACCMESO1_PLEURA	ASPH--RP11-32K4.1	9	31	ASPH	1328	chr8:62626828:-	RP11-32K4.1	51750	chr8:65143176:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.1274	0.4387	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,RP11-32K4.1->chr8:64599737-65281115:-	ACCMESO1_PLEURA	0.98	1	0.5661	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	MTAP--RP11-399D6.2	12	12	MTAP	12211	chr9:21859424:+	RP11-399D6.2	28909	chr9:22820737:+	ONLY_REF_SPLICE	YES	86	0	0.22	1	0.1698	0.1698	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	ACCMESO1_PLEURA	0.22	1	0.3396	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	C15orf57--CBX3	4	42	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	78	111	0.37	0.29	0.0566	0.5943	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	ACCMESO1_PLEURA	0.29	0.37	0.6509	TRUE	267	562	48	632	0	FALSE	ACH-000086
ACCMESO1_PLEURA	ASPH--RP11-32K4.1	4	30	ASPH	1328	chr8:62626828:-	RP11-32K4.1	51753	chr8:65143173:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.0566	0.4245	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,RP11-32K4.1->chr8:64599737-65281115:-	ACCMESO1_PLEURA	0.97	1	0.4811	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	RPS6--B2M	11	2	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	5925	0	0	1	0.1557	0.0283	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	ACCMESO1_PLEURA	0	1	0.184	TRUE	0	0	0	28	0	FALSE	ACH-000086
ACCMESO1_PLEURA	ASPH--RP11-32K4.1	4	25	ASPH	1328	chr8:62626828:-	RP11-32K4.1	53867	chr8:65063721:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.0566	0.3538	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,RP11-32K4.1->chr8:64599737-65281115:-	ACCMESO1_PLEURA	0.97	1	0.4104	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	CTD-2008L17.1--RP11-456O19.2	8	6	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	4	0	0.78	1	0.1132	0.0849	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	ACCMESO1_PLEURA	0.78	1	0.1981	FALSE	20	187	4	79	0	FALSE	ACH-000086
ACCMESO1_PLEURA	GPATCH8--LSM12	2	29	GPATCH8	2180	chr17:42552197:-	LSM12	28587	chr17:42114906:-	ONLY_REF_SPLICE	YES	21	172	0.6	0.15	0.0283	0.4104	GPATCH8->G-patch_domain_containing_8,chr17:42472652-42580798:-,LSM12->LSM12_homolog,chr17:42112003-42144987:-	ACCMESO1_PLEURA	0.15	0.6	0.4387	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	TMSB10--TMSB4X	9	1	TMSB10	1438	chr2:85133186:+	TMSB4X	6247	chrX:12994426:+	INCL_NON_REF_SPLICE	YES	1681	3309	0.01	0	0.1274	0.0142	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	ACCMESO1_PLEURA	0	0.01	0.1416	TRUE	0	1	0	17	1	FALSE	ACH-000086
ACCMESO1_PLEURA	NPM1P24--SET	8	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1132	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ACCMESO1_PLEURA	1	1	0.1132	TRUE	0	0	0	434	0	FALSE	ACH-000086
ACCMESO1_PLEURA	NPM1P24--SET	8	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1132	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ACCMESO1_PLEURA	1	1	0.1132	TRUE	0	0	0	434	0	FALSE	ACH-000086
ACCMESO1_PLEURA	TMSB10--TMSB4X	6	1	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	4429	7149	0	0	0.0849	0.0142	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	ACCMESO1_PLEURA	0	0	0.0991	FALSE	0	1	0	17	1	FALSE	ACH-000086
ACCMESO1_PLEURA	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0566	0.0991	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ACCMESO1_PLEURA	0.92	1	0.1557	FALSE	515	4851	409	746	0	FALSE	ACH-000086
ACCMESO1_PLEURA	RP11-96H19.1--RP11-446N19.1	3	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	1	0.92	0.92	0.0425	0.1274	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ACCMESO1_PLEURA	0.92	0.92	0.1699	FALSE	407	2205	196	549	0	FALSE	ACH-000086
ACCMESO1_PLEURA	CTD-2008L17.1--RP11-456O19.2	4	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	4	0	0.67	1	0.0566	0.0566	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	ACCMESO1_PLEURA	0.67	1	0.1132	FALSE	33	240	4	98	0	FALSE	ACH-000086
ACCMESO1_PLEURA	G3BP1--CTB-113P19.1	4	2	G3BP1	3768	chr5:151166276:+	CTB-113P19.1	32398	chr5:151104126:+	ONLY_REF_SPLICE	YES	616	0	0.01	1	0.0566	0.0283	LOCAL_REARRANGEMENT:+:[46263],G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-113P19.1->chr5:151056506-151104343:+	ACCMESO1_PLEURA	0.01	1	0.0849	FALSE	0	1	0	1	1	FALSE	ACH-000086
ACCMESO1_PLEURA	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0566	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ACCMESO1_PLEURA	1	1	0.0566	FALSE	462	80	0	856	0	FALSE	ACH-000086
ACCMESO1_PLEURA	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0566	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ACCMESO1_PLEURA	1	1	0.0566	FALSE	292	1546	117	613	0	FALSE	ACH-000086
ACCMESO1_PLEURA	GPATCH8--LSM12	1	11	GPATCH8	2180	chr17:42552197:-	LSM12	29825	chr17:42113668:-	ONLY_REF_SPLICE	NO	21	213	0.36	0.05	0.0142	0.1557	GPATCH8->G-patch_domain_containing_8,chr17:42472652-42580798:-,LSM12->LSM12_homolog,chr17:42112003-42144987:-	ACCMESO1_PLEURA	0.05	0.36	0.1699	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	1	1	0.92	0.0142	0.1415	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ACCMESO1_PLEURA	0.92	1	0.1557	FALSE	192	492	57	212	0	FALSE	ACH-000086
ACCMESO1_PLEURA	PDHX--CD44	3	1	PDHX	3068	chr11:34953031:+	CD44	37425	chr11:35236399:+	ONLY_REF_SPLICE	YES	141	514	0.03	0.01	0.0425	0.0142	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	ACCMESO1_PLEURA	0.01	0.03	0.0567	FALSE	0	0	0	4	0	FALSE	ACH-000086
ACCMESO1_PLEURA	MTAP--RP11-399D6.2	2	4	MTAP	9899	chr9:21854869:+	RP11-399D6.2	28909	chr9:22820737:+	ONLY_REF_SPLICE	YES	61	0	0.09	1	0.0283	0.0566	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	ACCMESO1_PLEURA	0.09	1	0.0849	TRUE	0	1	0	1	1	TRUE	ACH-000086
ACCMESO1_PLEURA	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0142	0.1132	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ACCMESO1_PLEURA	1	1	0.1274	FALSE	467	2173	244	435	0	FALSE	ACH-000086
ACCMESO1_PLEURA	TXNRD1--NFYB	2	4	TXNRD1	11664	chr12:104682818:+	NFYB	36515	chr12:104529310:-	ONLY_REF_SPLICE	YES	2125	211	0	0.03	0.0283	0.0566	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:+:-:[77490],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	ACCMESO1_PLEURA	0	0.03	0.0849	FALSE	0	0	0	6	0	FALSE	ACH-000086
ACCMESO1_PLEURA	CTD-2008L17.1--RP11-456O19.2	1	5	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	13011	chr18:53755642:+	ONLY_REF_SPLICE	NO	4	1	0.6	0.86	0.0142	0.0708	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	ACCMESO1_PLEURA	0.6	0.86	0.085	FALSE	0	12	0	8	0	FALSE	ACH-000086
ACCMESO1_PLEURA	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0283	0.0142	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ACCMESO1_PLEURA	0.6	1	0.0425	FALSE	125	705	46	456	0	FALSE	ACH-000086
ACCMESO1_PLEURA	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	49	0.43	0.06	0.0283	0.0142	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	ACCMESO1_PLEURA	0.06	0.43	0.0425	FALSE	16	356	14	466	0	FALSE	ACH-000086
ACCMESO1_PLEURA	RP11-476K15.1--CTD-2015H3.2	2	1	RP11-476K15.1	1041	chr18:1509224:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0283	0.0142	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	ACCMESO1_PLEURA	0.75	1	0.0425	FALSE	0	0	0	5	0	FALSE	ACH-000086
ACCMESO1_PLEURA	ARL13B--UBLCP1	2	0	ARL13B	1344	chr3:93699326:+	UBLCP1	25863	chr5:158705246:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	ARL13B->ADP_ribosylation_factor_like_GTPase_13B,chr3:93698983-93774512:+,UBLCP1->chr5:158690089-158713044:+,ubiquitin_like_domain_containing_CTD_phosphatase_1	ACCMESO1_PLEURA	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	C19orf25--DAZAP1	2	0	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	ACCMESO1_PLEURA	1	1	0.0283	TRUE	6	7	1	24	0	FALSE	ACH-000086
ACCMESO1_PLEURA	COMMD1--B3GNT2	2	0	COMMD1	9512	chr2:62363114:+	B3GNT2	17072	chr2:62449347:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	NEIGHBORS[48866],COMMD1->chr2:62115859-62374382:+,copper_metabolism_domain_containing_1,B3GNT2->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_2,chr2:62423248-62451866:+	ACCMESO1_PLEURA	1	1	0.0283	FALSE	0	4	0	4	0	FALSE	ACH-000086
ACCMESO1_PLEURA	EIF3G--AHSA1	2	0	EIF3G	2253	chr19:10229344:-	AHSA1	13861	chr14:77930941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	EIF3G->chr19:10225693-10230596:-,eukaryotic_translation_initiation_factor_3_subunit_G,AHSA1->activator_of_Hsp90_ATPase_activity_1,chr14:77924213-77935817:+	ACCMESO1_PLEURA	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	EPB41L2--QKI	2	0	EPB41L2	1181	chr6:131384282:-	QKI	47252	chr6:163876311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	EPB41L2->chr6:131160487-131384462:-,erythrocyte_membrane_protein_band_4.1_like_2,QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+	ACCMESO1_PLEURA	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	PRR16--CTD-2334D19.1	2	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	ACCMESO1_PLEURA	1	1	0.0283	FALSE	56	216	12	147	0	FALSE	ACH-000086
ACCMESO1_PLEURA	RCC1--SPARC	2	0	RCC1	2175	chr1:28834672:+	SPARC	22570	chr5:151055762:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	ACCMESO1_PLEURA	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ACCMESO1_PLEURA	1	1	0.0283	FALSE	416	2512	207	587	0	FALSE	ACH-000086
ACCMESO1_PLEURA	RP11-435B5.4--ATP6V1H	2	0	RP11-435B5.4	2843	chr1:143465380:-	ATP6V1H	37813	chr8:54656250:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	RP11-435B5.4->chr1:143354963-143467632:-,ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-	ACCMESO1_PLEURA	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	UBALD1--SKI	2	0	UBALD1	1350	chr16:4664679:-	SKI	13018	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	UBALD1->UBA_like_domain_containing_1,chr16:4658884-4665028:-,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	ACCMESO1_PLEURA	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	ZBTB17--SZRD1	2	0	ZBTB17	2237	chr1:16299534:-	SZRD1	20278	chr1:16717870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	ZBTB17->chr1:16268364-16302627:-,zinc_finger_and_BTB_domain_containing_17,SZRD1->SUZ_RNA_binding_domain_containing_1,chr1:16679070-16724640:+	ACCMESO1_PLEURA	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000086
ACCMESO1_PLEURA	RPL9--UBE2K	1	2	RPL9	3543	chr4:39458026:-	UBE2K	15187	chr4:39779980:+	ONLY_REF_SPLICE	NO	5390	296	0	0.01	0.0142	0.0283	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},RPL9->chr4:39455744-39460568:-,ribosomal_protein_L9,UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K	ACCMESO1_PLEURA	0	0.01	0.0425	FALSE	0	0	0	2	0	FALSE	ACH-000086
ACCMESO1_PLEURA	TXNRD1--NFYB	1	2	TXNRD1	11664	chr12:104682818:+	NFYB	39402	chr12:104522295:-	ONLY_REF_SPLICE	YES	2125	741	0	0	0.0142	0.0283	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:+:-:[77490],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	ACCMESO1_PLEURA	0	0	0.0425	FALSE	0	0	0	1	0	FALSE	ACH-000086
ACCMESO1_PLEURA	ABCA1--RAD23B	1	1	ABCA1	1303	chr9:107690216:-	RAD23B	60784	chr9:110062422:+	ONLY_REF_SPLICE	YES	27	284	0.07	0.01	0.0142	0.0142	GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},ABCA1->ATP_binding_cassette_subfamily_A_member_1,Oncogene{Bushman},chr9:107543283-107690518:-,RAD23B->Oncogene{Bushman},RAD23_homolog_B,_nucleotide_excision_repair_protein,chr9:110045418-110094475:+	ACCMESO1_PLEURA	0.01	0.07	0.0284	FALSE	0	0	0	1	0	FALSE	ACH-000086
ACCMESO1_PLEURA	ATL2--HNRNPLL	1	1	ATL2	1143	chr2:38604285:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	YES	147	103	0.01	0.02	0.0142	0.0142	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	ACCMESO1_PLEURA	0.01	0.02	0.0284	FALSE	1	4	0	6	0	FALSE	ACH-000086
ACCMESO1_PLEURA	C7orf50--MAD1L1	1	1	C7orf50	6340	chr7:1067894:-	MAD1L1	49568	chr7:1976533:-	ONLY_REF_SPLICE	YES	660	49	0	0.04	0.0142	0.0142	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	ACCMESO1_PLEURA	0	0.04	0.0284	FALSE	0	0	0	1	0	FALSE	ACH-000086
ACCMESO1_PLEURA	CAV1--CAV2	1	1	CAV1	2905	chr7:116166743:+	CAV2	32473	chr7:116146025:+	ONLY_REF_SPLICE	YES	3532	3030	0	0	0.0142	0.0142	GTEx&tcga_normals:1/3694=0.03%,PROTCLUST,LOCAL_REARRANGEMENT:+:[16244],CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+,CAV2->caveolin_2,chr7:115927434-116148595:+	ACCMESO1_PLEURA	0	0	0.0284	FALSE	0	0	0	3	0	FALSE	ACH-000086
ACCMESO1_PLEURA	DANCR--UBE2K	1	1	DANCR	1530	chr4:53579126:+	UBE2K	11877	chr4:39776454:+	ONLY_REF_SPLICE	YES	271	477	0.01	0	0.0142	0.0142	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K	ACCMESO1_PLEURA	0	0.01	0.0284	FALSE	0	0	0	1	0	FALSE	ACH-000086
ACCMESO1_PLEURA	ERCC6L--PIN4	1	1	ERCC6L	1204	chrX:71458694:-	PIN4	13131	chrX:71416635:+	ONLY_REF_SPLICE	YES	36	492	0.05	0	0.0142	0.0142	NEIGHBORS_OVERLAP:-:+:[34387],ERCC6L->chrX:71424510-71458897:-,excision_repair_cross-complementation_group_6_like,PIN4->chrX:71401203-71522776:+,peptidylprolyl_cis/trans_isomerase,_NIMA-interacting_4	ACCMESO1_PLEURA	0	0.05	0.0284	FALSE	0	0	0	2	0	FALSE	ACH-000086
ACCMESO1_PLEURA	ERP44--PFDN4	1	1	ERP44	1257	chr9:102861066:-	PFDN4	23944	chr20:52835558:+	ONLY_REF_SPLICE	YES	111	980	0.02	0	0.0142	0.0142	ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44,PFDN4->chr20:52824386-52844591:+,prefoldin_subunit_4	ACCMESO1_PLEURA	0	0.02	0.0284	FALSE	0	0	0	1	0	FALSE	ACH-000086
ACCMESO1_PLEURA	KIAA0319L--PSMB2	1	1	KIAA0319L	4118	chr1:36019951:-	PSMB2	35352	chr1:36102033:-	ONLY_REF_SPLICE	NO	46	1585	0.04	0	0.0142	0.0142	LOCAL_REARRANGEMENT:-:[43634],KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,PSMB2->chr1:36067185-36107445:-,proteasome_subunit_beta_2	ACCMESO1_PLEURA	0	0.04	0.0284	FALSE	0	2	0	1	2	FALSE	ACH-000086
ACCMESO1_PLEURA	LDLRAD3--PRR5L	1	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	20830	chr11:36350668:+	ONLY_REF_SPLICE	NO	26	1	0.07	0.67	0.0142	0.0142	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	ACCMESO1_PLEURA	0.07	0.67	0.0284	FALSE	2	24	3	12	0	FALSE	ACH-000086
ACCMESO1_PLEURA	RP11-476K15.1--CTD-2015H3.2	1	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	NO	2	0	0.5	1	0.0142	0.0142	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	ACCMESO1_PLEURA	0.5	1	0.0284	FALSE	0	46	0	73	0	FALSE	ACH-000086
ACCMESO1_PLEURA	RP11-818F20.5--TXNRD1	1	1	RP11-818F20.5	1439	chr12:104674062:-	TXNRD1	20321	chr12:104705068:+	ONLY_REF_SPLICE	YES	167	2379	0.01	0	0.0142	0.0142	NEIGHBORS_OVERLAP:-:+:[18408],RP11-818F20.5->chr12:104656092-104674500:-,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	ACCMESO1_PLEURA	0	0.01	0.0284	FALSE	0	0	0	3	0	FALSE	ACH-000086
ACCMESO1_PLEURA	SMYD3--SCCPDH	1	1	SMYD3	8315	chr1:246490503:-	SCCPDH	36005	chr1:246899277:+	ONLY_REF_SPLICE	YES	342	178	0.01	0.01	0.0142	0.0142	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,SCCPDH->chr1:246887349-246931439:+,saccharopine_dehydrogenase_(putative)	ACCMESO1_PLEURA	0.01	0.01	0.0284	FALSE	0	0	0	1	0	FALSE	ACH-000086
ACCMESO1_PLEURA	TENM3--WWC2	1	1	TENM3	5402	chr4:183268082:+	WWC2	46296	chr4:184114752:+	ONLY_REF_SPLICE	YES	37	21	0.05	0.09	0.0142	0.0142	TENM3->chr4:183065140-183724177:+,teneurin_transmembrane_protein_3,WWC2->WW_and_C2_domain_containing_2,chr4:184020446-184241930:+	ACCMESO1_PLEURA	0.05	0.09	0.0284	TRUE	0	0	0	1	0	FALSE	ACH-000086
ACCMESO1_PLEURA	TPM2--ACTG1	1	1	TPM2	4592	chr9:35685061:-	ACTG1	14213	chr17:79478652:-	ONLY_REF_SPLICE	YES	1395	7501	0	0	0.0142	0.0142	GTEx&tcga_normals:114/3694=3.09%,GTEx:2.09%,GTEx_FI:{Blood_Vessel=[count:158=pct:42.8],Esophagus=[count:132=pct:32.6],Colon=[count:59=pct:30.9],Heart=[count:15=pct:6.0],Prostate=[count:9=pct:14.8],Stomach=[count:8=pct:9.0],Adipose_Tissue=[count:6=pct:2.0],Uterus=[count:4=pct:9.3],Small_Intestine=[count:3=pct:5.5],Vagina=[count:3=pct:5.5],Bladder=[count:2=pct:22.2],Lung=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Breast=[count:1=pct:0.9],_not_provided_=[count:1=pct:100.0],Fallopian_Tube=[count:1=pct:16.7],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=484;pct=5.59%;dist=Artery_-_Tibial=130,Esophagus_-_Muscularis=91,Esophagus_-_Gastroesophageal_Junction=56,Colon_-_Sigmoid=48,Artery_-_Coronary=29,Artery_-_Aorta=28,Colon_-_Transverse=23,Stomach=15,Adipose_-_Subcutaneous=13,Prostate=10,Uterus=8,Esophagus_-_Mucosa=6,Small_Intestine_-_Terminal_Ileum=5,Heart_-_Left_Ventricle=5,Heart_-_Atrial_Appendage=5,Breast_-_Mammary_Tissue=2,Vagina=2,Bladder=2,Ovary=1,Lung=1,Adipose_-_Visceral_(Omentum)=1,Muscle_-_Skeletal=1,Cells_-_Transformed_fibroblasts=1,Fallopian_Tube=1},TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),ACTG1->actin_gamma_1,chr17:79476997-79490873:-	ACCMESO1_PLEURA	0	0	0.0284	FALSE	237	57	25	9	0	FALSE	ACH-000086
ACCMESO1_PLEURA	UXS1--FHL2	1	1	UXS1	14546	chr2:106739426:-	FHL2	33526	chr2:106002997:-	ONLY_REF_SPLICE	YES	218	651	0.01	0	0.0142	0.0142	UXS1->UDP-glucuronate_decarboxylase_1,chr2:106709759-106810795:-,FHL2->Oncogene{Bushman},chr2:105974169-106054970:-,four_and_a_half_LIM_domains_2	ACCMESO1_PLEURA	0	0.01	0.0284	FALSE	0	0	0	1	0	FALSE	ACH-000086
ACCMESO1_PLEURA	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	30	0	0.06	1	0.0142	0.0142	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	ACCMESO1_PLEURA	0.06	1	0.0284	FALSE	272	151	14	158	0	FALSE	ACH-000086
MHHES1_BONE	EWSR1--FLI1	263	57	EWSR1	11554	chr22:29683123:+	FLI1	35098	chr11:128651853:+	ONLY_REF_SPLICE	YES	229	1	0.58	1	2.5574	0.5543	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	MHHES1_BONE	0.58	1	3.1117	TRUE	0	0	0	5	0	TRUE	ACH-000391
MHHES1_BONE	ADAM9--ANKFY1	143	48	ADAM9	1292	chr8:38854679:+	ANKFY1	58266	chr17:4075975:-	ONLY_REF_SPLICE	YES	87	39	0.69	0.83	1.3905	0.4667	{Klijn_CCL:Sarcomatoid=1},ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,ANKFY1->ankyrin_repeat_and_FYVE_domain_containing_1,chr17:4067201-4167274:-	MHHES1_BONE	0.69	0.83	1.8572	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	TIMM23B--LINC00843	96	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.9335	0.1459	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MHHES1_BONE	0.98	1	1.0794	TRUE	508	994	45	981	0	FALSE	ACH-000391
MHHES1_BONE	MT-TA--MT-TN	85	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8265	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MHHES1_BONE	1	1	0.8265	FALSE	369	2501	205	193	0	FALSE	ACH-000391
MHHES1_BONE	ANP32E--PTMA	52	1	ANP32E	7086	chr1:150199005:-	PTMA	19614	chr2:232576640:+	INCL_NON_REF_SPLICE	YES	181	2491	0.23	0.02	0.5056	0.0097	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHES1_BONE	0.02	0.23	0.5153	TRUE	0	0	0	2	0	FALSE	ACH-000391
MHHES1_BONE	TIMM23--RP11-464F9.1	52	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5056	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MHHES1_BONE	1	1	0.5056	TRUE	519	3926	326	965	0	FALSE	ACH-000391
MHHES1_BONE	ZNF654--HMGB2	48	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4667	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MHHES1_BONE	1	1	0.4667	TRUE	0	0	0	518	0	FALSE	ACH-000391
MHHES1_BONE	ANP32E--PTMA	47	1	ANP32E	7037	chr1:150199054:-	PTMA	19616	chr2:232576642:+	INCL_NON_REF_SPLICE	NO	184	2432	0.21	0.02	0.457	0.0097	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHES1_BONE	0.02	0.21	0.4667	TRUE	0	0	0	2	0	FALSE	ACH-000391
MHHES1_BONE	MT-TA--MT-TC	40	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.389	0.0292	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MHHES1_BONE	1	1	0.4182	FALSE	462	80	0	856	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND4--MT-ND4L	4	128	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	3	1	0.98	0.99	0.0389	1.2447	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MHHES1_BONE	0.98	0.99	1.2836	FALSE	344	826	44	306	0	FALSE	ACH-000391
MHHES1_BONE	ADAM9--ANKFY1	28	19	ADAM9	1292	chr8:38854679:+	ANKFY1	59391	chr17:4074155:-	ONLY_REF_SPLICE	YES	87	38	0.35	0.55	0.2723	0.1848	{Klijn_CCL:Sarcomatoid=1},ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,ANKFY1->ankyrin_repeat_and_FYVE_domain_containing_1,chr17:4067201-4167274:-	MHHES1_BONE	0.35	0.55	0.4571	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	MT-ND4--MT-ND4L	3	110	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	1	1	0.99	0.99	0.0292	1.0696	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MHHES1_BONE	0.99	0.99	1.0988	FALSE	344	826	44	306	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND4--MT-ND4L	7	91	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	2161	0	0.04	1	0.0681	0.8849	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MHHES1_BONE	0.04	1	0.953	FALSE	344	827	44	306	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND4--MT-ND4L	5	96	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1	1	0.99	0.99	0.0486	0.9335	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MHHES1_BONE	0.99	0.99	0.9821	FALSE	344	821	44	306	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND4--MT-ND4L	4	96	MT-ND4	1301	chrM:11060:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	9	0	0.92	1	0.0389	0.9335	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MHHES1_BONE	0.92	1	0.9724	FALSE	344	827	44	306	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND6--MT-TE	27	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2625	0.0194	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHES1_BONE	1	1	0.2819	FALSE	499	1288	110	792	0	FALSE	ACH-000391
MHHES1_BONE	OR51S1--TP53I11	27	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2625	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	MHHES1_BONE	1	1	0.2625	TRUE	402	216	10	229	0	FALSE	ACH-000391
MHHES1_BONE	ANP32E--PTMA	25	1	ANP32E	8260	chr1:150195512:-	PTMA	19620	chr2:232576646:+	INCL_NON_REF_SPLICE	YES	123	2497	0.17	0.01	0.2431	0.0097	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHES1_BONE	0.01	0.17	0.2528	TRUE	0	0	0	2	0	FALSE	ACH-000391
MHHES1_BONE	MT-TA--MT-TN	12	53	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1167	0.5154	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MHHES1_BONE	1	1	0.6321	FALSE	369	2501	205	193	0	FALSE	ACH-000391
MHHES1_BONE	RBM4--ADAM18	24	2	RBM4	3939	chr11:66407594:+	ADAM18	27347	chr8:39502857:+	ONLY_REF_SPLICE	YES	500	0	0.05	1	0.2334	0.0194	RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,ADAM18->ADAM_metallopeptidase_domain_18,chr8:39442008-39587583:+	MHHES1_BONE	0.05	1	0.2528	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	MT-CO3--MT-ATP6	9	45	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	4	0.96	0.93	0.0875	0.4376	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MHHES1_BONE	0.93	0.96	0.5251	FALSE	189	492	56	216	0	FALSE	ACH-000391
MHHES1_BONE	RP11-680G10.1--GSE1	19	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	8	1	0.75	0.1848	0.0486	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MHHES1_BONE	0.75	1	0.2334	TRUE	458	1351	185	561	0	FALSE	ACH-000391
MHHES1_BONE	MT-TA--MT-TN	10	34	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0972	0.3306	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MHHES1_BONE	1	1	0.4278	FALSE	369	2501	205	193	0	FALSE	ACH-000391
MHHES1_BONE	ANP32E--PTMA	17	1	ANP32E	7039	chr1:150199052:-	PTMA	19042	chr2:232576068:+	INCL_NON_REF_SPLICE	NO	188	2987	0.09	0.01	0.1653	0.0097	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHES1_BONE	0.01	0.09	0.175	FALSE	0	0	0	2	0	FALSE	ACH-000391
MHHES1_BONE	ANP32E--PTMA	17	1	ANP32E	8260	chr1:150195512:-	PTMA	19044	chr2:232576070:+	INCL_NON_REF_SPLICE	YES	123	2953	0.13	0.01	0.1653	0.0097	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHES1_BONE	0.01	0.13	0.175	TRUE	0	0	0	2	0	FALSE	ACH-000391
MHHES1_BONE	AC016907.3--ALK	16	0	AC016907.3	7645	chr2:30342634:-	ALK	15793	chr2:29940563:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1556	0	GTEx_FI:{Brain=[count:14=pct:2.1],Testis=[count:6=pct:5.7],Adrenal_Gland=[count:1=pct:1.2],Nerve=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Prostate=[count:1=pct:1.6]},AC016907.3->chr2:30273932-30366670:-,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	MHHES1_BONE	1	1	0.1556	TRUE	22	9	2	3	0	FALSE	ACH-000391
MHHES1_BONE	MT-TA--MT-TN	12	14	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1167	0.1361	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MHHES1_BONE	1	1	0.2528	FALSE	369	2501	205	193	0	FALSE	ACH-000391
MHHES1_BONE	RP11-680G10.1--GSE1	14	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	19	1	0.47	0.1361	0.0292	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MHHES1_BONE	0.47	1	0.1653	TRUE	465	1949	224	605	0	FALSE	ACH-000391
MHHES1_BONE	MT-CO3--MT-ATP6	3	44	MT-CO3	1083	chrM:9289:+	MT-ATP6	5222	chrM:8964:+	INCL_NON_REF_SPLICE	YES	1	7	0.98	0.87	0.0292	0.4278	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MHHES1_BONE	0.87	0.98	0.457	FALSE	189	492	56	216	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND6--MT-TE	13	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1264	0.0292	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHES1_BONE	1	1	0.1556	FALSE	499	1288	110	792	0	FALSE	ACH-000391
MHHES1_BONE	MT-TA--MT-TN	13	1	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1264	0.0097	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MHHES1_BONE	1	1	0.1361	FALSE	369	2501	205	193	0	FALSE	ACH-000391
MHHES1_BONE	AC131097.3--AC093642.5	12	3	AC131097.3	2273	chr2:242824786:+	AC093642.5	12811	chr2:243056790:+	ONLY_REF_SPLICE	YES	5	13	0.75	0.54	0.1167	0.0292	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	MHHES1_BONE	0.54	0.75	0.1459	FALSE	2	37	1	16	0	FALSE	ACH-000391
MHHES1_BONE	MT-TA--MT-TC	12	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1167	0.0292	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MHHES1_BONE	1	1	0.1459	FALSE	462	80	0	856	0	FALSE	ACH-000391
MHHES1_BONE	C15orf57--CBX3	10	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	26	16	0.43	0.56	0.0972	0.0972	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MHHES1_BONE	0.43	0.56	0.1944	TRUE	267	562	48	632	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND4--MT-ND4L	4	32	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	178	0	0.17	1	0.0389	0.3112	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MHHES1_BONE	0.17	1	0.3501	FALSE	344	827	44	306	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND6--MT-TE	8	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0778	0.1556	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHES1_BONE	0.96	1	0.2334	FALSE	499	1288	110	792	0	FALSE	ACH-000391
MHHES1_BONE	ANP32E--PTMA	11	1	ANP32E	7050	chr1:150199041:-	PTMA	19584	chr2:232576610:+	INCL_NON_REF_SPLICE	YES	179	2703	0.06	0	0.107	0.0097	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHES1_BONE	0	0.06	0.1167	TRUE	0	0	0	2	0	FALSE	ACH-000391
MHHES1_BONE	HSP90AB1--MT-RNR2	10	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1584	0	0.01	1	0.0972	0.0097	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MHHES1_BONE	0.01	1	0.1069	FALSE	13	9	0	364	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND4--MT-ND4L	4	22	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	5	0	0.84	1	0.0389	0.2139	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MHHES1_BONE	0.84	1	0.2528	FALSE	344	826	44	306	0	FALSE	ACH-000391
MHHES1_BONE	MT-TA--MT-TN	5	18	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0.175	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MHHES1_BONE	1	1	0.2236	FALSE	369	2501	205	193	0	FALSE	ACH-000391
MHHES1_BONE	MT-CO3--MT-ATP6	9	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0875	0.0097	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MHHES1_BONE	0.83	1	0.0972	FALSE	189	492	56	216	0	FALSE	ACH-000391
MHHES1_BONE	ADAM9--ANKFY1	4	20	ADAM9	1292	chr8:38854679:+	ANKFY1	58340	chr17:4075901:-	INCL_NON_REF_SPLICE	YES	87	25	0.22	0.49	0.0389	0.1945	{Klijn_CCL:Sarcomatoid=1},ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,ANKFY1->ankyrin_repeat_and_FYVE_domain_containing_1,chr17:4067201-4167274:-	MHHES1_BONE	0.22	0.49	0.2334	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	MT-ND4--MT-ND4L	4	20	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.0389	0.1945	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MHHES1_BONE	0.89	1	0.2334	FALSE	344	826	44	306	0	FALSE	ACH-000391
MHHES1_BONE	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0875	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MHHES1_BONE	1	1	0.0875	FALSE	462	80	0	856	0	FALSE	ACH-000391
MHHES1_BONE	MT-TA--MT-TN	9	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0875	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MHHES1_BONE	1	1	0.0875	FALSE	369	2501	205	193	0	FALSE	ACH-000391
MHHES1_BONE	ANP32E--PTMA	8	1	ANP32E	7040	chr1:150199051:-	PTMA	19616	chr2:232576642:+	INCL_NON_REF_SPLICE	NO	183	2432	0.05	0	0.0778	0.0097	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHES1_BONE	0	0.05	0.0875	FALSE	0	0	0	2	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND6--MT-TE	3	21	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0292	0.2042	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHES1_BONE	0.96	1	0.2334	FALSE	499	1288	110	792	0	FALSE	ACH-000391
MHHES1_BONE	ANP32E--PTMA	7	1	ANP32E	7086	chr1:150199005:-	PTMA	19629	chr2:232576655:+	INCL_NON_REF_SPLICE	YES	181	2314	0.04	0	0.0681	0.0097	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHES1_BONE	0	0.04	0.0778	FALSE	0	0	0	2	0	FALSE	ACH-000391
MHHES1_BONE	MT-CO3--MT-ATP6	3	17	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0292	0.1653	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MHHES1_BONE	0.95	1	0.1945	FALSE	189	492	56	216	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND4--MT-ND4L	7	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0681	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MHHES1_BONE	1	1	0.0681	FALSE	344	821	44	306	0	FALSE	ACH-000391
MHHES1_BONE	HEXIM2--NMT1	6	2	HEXIM2	3160	chr17:43240226:+	NMT1	19914	chr17:43180319:+	ONLY_REF_SPLICE	YES	5	187	0.62	0.04	0.0583	0.0194	{Klijn_CCL:Sarcomatoid=1},LOCAL_REARRANGEMENT:+:[51683],HEXIM2->chr17:43238067-43247407:+,hexamethylene_bisacetamide_inducible_2,NMT1->N-myristoyltransferase_1,Oncogene{Bushman},chr17:43128978-43186384:+	MHHES1_BONE	0.04	0.62	0.0777	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	EEF2--RPS28	6	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	2332	0	0	1	0.0583	0.0097	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MHHES1_BONE	0	1	0.068	FALSE	0	0	0	100	0	FALSE	ACH-000391
MHHES1_BONE	AC131097.3--AC093642.5	4	8	AC131097.3	2273	chr2:242824786:+	AC093642.5	11670	chr2:243037038:+	ONLY_REF_SPLICE	YES	5	3	0.71	0.8	0.0389	0.0778	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	MHHES1_BONE	0.71	0.8	0.1167	FALSE	3	20	2	16	0	FALSE	ACH-000391
MHHES1_BONE	AL136376.1--RPS28	6	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MHHES1_BONE	1	1	0.0583	TRUE	0	0	0	12	0	TRUE	ACH-000391
MHHES1_BONE	MT-CO3--MT-ATP6	6	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MHHES1_BONE	1	1	0.0583	FALSE	189	492	56	216	0	FALSE	ACH-000391
MHHES1_BONE	MT-CO3--MT-ATP6	6	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MHHES1_BONE	1	1	0.0583	FALSE	189	492	56	216	0	FALSE	ACH-000391
MHHES1_BONE	MT-TA--MT-TN	6	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MHHES1_BONE	1	1	0.0583	FALSE	369	2501	205	193	0	FALSE	ACH-000391
MHHES1_BONE	NKX2-2--PTMA	5	4	NKX2-2	2853	chr20:21492812:-	PTMA	11442	chr2:232576058:+	INCL_NON_REF_SPLICE	YES	211	3313	0.04	0	0.0486	0.0389	NKX2-2->NK2_homeobox_2,Oncogene{Bushman},chr20:21491648-21494664:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHES1_BONE	0	0.04	0.0875	FALSE	0	0	0	1	0	FALSE	ACH-000391
MHHES1_BONE	PVRL3--ANKRD20A14P	6	0	PVRL3	2694	chr3:110791024:+	ANKRD20A14P	23763	chr1:142803532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0583	0	PVRL3->chr3:110788918-110994410:+,ANKRD20A14P->ankyrin_repeat_domain_20_family_member_A14,_pseudogene,chr1:142803532-142827235:+	MHHES1_BONE	1	1	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	JSRP1--RPS28	5	2	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0.0194	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MHHES1_BONE	1	1	0.068	TRUE	0	1	0	84	1	FALSE	ACH-000391
MHHES1_BONE	SNTB2--CIRH1A	5	2	SNTB2	1618	chr16:69221649:+	CIRH1A	22991	chr16:69167415:+	ONLY_REF_SPLICE	YES	12	9	0.37	0.44	0.0486	0.0194	{Klijn_CCL:Sarcomatoid=1},NEIGHBORS_OVERLAP:+:+:[44001],SNTB2->chr16:69221032-69342955:+,syntrophin_beta_2,CIRH1A->chr16:69165194-69265033:+	MHHES1_BONE	0.37	0.44	0.068	FALSE	0	0	0	1	0	FALSE	ACH-000391
MHHES1_BONE	ANP32E--PTMA	5	1	ANP32E	7046	chr1:150199045:-	PTMA	19598	chr2:232576624:+	INCL_NON_REF_SPLICE	NO	185	2525	0.03	0	0.0486	0.0097	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHES1_BONE	0	0.03	0.0583	FALSE	0	0	0	2	0	FALSE	ACH-000391
MHHES1_BONE	ANP32E--PTMA	5	1	ANP32E	8260	chr1:150195512:-	PTMA	19054	chr2:232576080:+	INCL_NON_REF_SPLICE	NO	123	2730	0.05	0	0.0486	0.0097	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHES1_BONE	0	0.05	0.0583	FALSE	0	0	0	2	0	FALSE	ACH-000391
MHHES1_BONE	ANP32E--PTMA	5	1	ANP32E	9269	chr1:150193055:-	PTMA	19610	chr2:232576636:+	INCL_NON_REF_SPLICE	NO	150	2506	0.04	0	0.0486	0.0097	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHES1_BONE	0	0.04	0.0583	FALSE	0	0	0	1	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND4--MT-ND4L	3	8	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	7	0	0.61	1	0.0292	0.0778	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MHHES1_BONE	0.61	1	0.107	FALSE	344	827	44	306	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND4--MT-ND4L	3	8	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	7	0	0.61	1	0.0292	0.0778	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MHHES1_BONE	0.61	1	0.107	FALSE	344	827	44	306	0	FALSE	ACH-000391
MHHES1_BONE	RP11-96H19.1--RP11-446N19.1	5	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MHHES1_BONE	1	1	0.0486	FALSE	515	4851	409	746	0	FALSE	ACH-000391
MHHES1_BONE	C15orf57--CBX3	3	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	23	17	0.3	0.37	0.0292	0.0681	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MHHES1_BONE	0.3	0.37	0.0973	TRUE	267	562	48	632	0	FALSE	ACH-000391
MHHES1_BONE	JSRP1--RPS28	4	2	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0.0194	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MHHES1_BONE	1	1	0.0583	TRUE	0	1	0	84	1	FALSE	ACH-000391
MHHES1_BONE	ANP32E--PTMA	4	1	ANP32E	7040	chr1:150199051:-	PTMA	19589	chr2:232576615:+	INCL_NON_REF_SPLICE	NO	183	2684	0.03	0	0.0389	0.0097	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHES1_BONE	0	0.03	0.0486	FALSE	0	0	0	2	0	FALSE	ACH-000391
MHHES1_BONE	HSP90AB1--MT-RNR2	4	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1598	0	0	1	0.0389	0.0097	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MHHES1_BONE	0	1	0.0486	FALSE	13	9	0	364	0	FALSE	ACH-000391
MHHES1_BONE	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MHHES1_BONE	1	1	0.0389	FALSE	189	492	56	216	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND4--MT-ND4L	4	0	MT-ND4	1059	chrM:10818:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MHHES1_BONE	1	1	0.0389	FALSE	344	821	44	306	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHES1_BONE	1	1	0.0389	FALSE	499	1288	110	792	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHES1_BONE	1	1	0.0389	FALSE	499	1288	110	792	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHES1_BONE	1	1	0.0389	FALSE	499	1288	110	792	0	FALSE	ACH-000391
MHHES1_BONE	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MHHES1_BONE	1	1	0.0389	FALSE	369	2501	205	193	0	FALSE	ACH-000391
MHHES1_BONE	VTI1A--RP11-57H14.3	4	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0389	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	MHHES1_BONE	1	1	0.0389	FALSE	272	151	14	158	0	FALSE	ACH-000391
MHHES1_BONE	YWHAE--CRK	4	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0389	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	MHHES1_BONE	1	1	0.0389	TRUE	6	50	7	115	0	FALSE	ACH-000391
MHHES1_BONE	JSRP1--RPS28	3	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0.0194	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MHHES1_BONE	1	1	0.0486	TRUE	0	1	0	84	1	FALSE	ACH-000391
MHHES1_BONE	PROSC--SRSF1	3	2	PROSC	2996	chr8:37623873:+	SRSF1	14701	chr17:56082402:-	ONLY_REF_SPLICE	YES	100	431	0.05	0.01	0.0292	0.0194	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Breast=[count:2=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=3,Brain_-_Hippocampus=1,Thyroid=1,Adipose_-_Subcutaneous=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	MHHES1_BONE	0.01	0.05	0.0486	FALSE	6	2	0	9	0	FALSE	ACH-000391
MHHES1_BONE	RBM4--ADAM18	3	2	RBM4	6699	chr11:66411611:+	ADAM18	27347	chr8:39502857:+	ONLY_REF_SPLICE	YES	419	0	0.01	1	0.0292	0.0194	RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+,ADAM18->ADAM_metallopeptidase_domain_18,chr8:39442008-39587583:+	MHHES1_BONE	0.01	1	0.0486	FALSE	0	0	0	1	0	FALSE	ACH-000391
MHHES1_BONE	ANP32E--PTMA	3	1	ANP32E	7040	chr1:150199051:-	PTMA	19625	chr2:232576651:+	INCL_NON_REF_SPLICE	NO	183	2288	0.02	0	0.0292	0.0097	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Breast=1},ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHES1_BONE	0	0.02	0.0389	FALSE	0	0	0	2	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MHHES1_BONE	1	1	0.0292	FALSE	344	821	44	306	0	FALSE	ACH-000391
MHHES1_BONE	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHES1_BONE	1	1	0.0292	FALSE	499	1288	110	792	0	FALSE	ACH-000391
MHHES1_BONE	AC131097.3--AC093642.5	2	2	AC131097.3	2273	chr2:242824786:+	AC093642.5	18598	chr2:243080935:+	ONLY_REF_SPLICE	YES	5	13	0.44	0.24	0.0194	0.0194	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	MHHES1_BONE	0.24	0.44	0.0388	FALSE	0	1	0	3	0	FALSE	ACH-000391
MHHES1_BONE	SNTB2--CIRH1A	2	2	SNTB2	1618	chr16:69221649:+	CIRH1A	22937	chr16:69167361:+	ONLY_REF_SPLICE	YES	12	5	0.25	0.44	0.0194	0.0194	{Klijn_CCL:Sarcomatoid=1},NEIGHBORS_OVERLAP:+:+:[44001],SNTB2->chr16:69221032-69342955:+,syntrophin_beta_2,CIRH1A->chr16:69165194-69265033:+	MHHES1_BONE	0.25	0.44	0.0388	FALSE	0	0	0	1	0	FALSE	ACH-000391
MHHES1_BONE	WWOX--RP11-319G9.5	2	1	WWOX	25668	chr16:78790912:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	39	0	0.07	1	0.0194	0.0097	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	MHHES1_BONE	0.07	1	0.0291	FALSE	1	12	1	1	0	FALSE	ACH-000391
MHHES1_BONE	WWOX--RP11-319G9.5	2	1	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	35	0	0.08	1	0.0194	0.0097	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	MHHES1_BONE	0.08	1	0.0291	FALSE	33	33	2	19	0	FALSE	ACH-000391
MHHES1_BONE	B4GALT1--ZNF730	2	0	B4GALT1	2835	chr9:33135187:-	ZNF730	17633	chr19:23316882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,ZNF730->chr19:23258012-23330021:+,zinc_finger_protein_730	MHHES1_BONE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	CA5B--TARS	2	0	CA5B	8332	chrX:15782898:+	TARS	42452	chr5:33466976:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	CA5B->carbonic_anhydrase_5B,chrX:15706953-15805747:+,TARS->chr5:33440802-33469644:+,threonyl-tRNA_synthetase	MHHES1_BONE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	DLG2--ZNF131	2	0	DLG2	40013	chr11:83344254:-	ZNF131	74051	chr5:43122141:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	DLG2->chr11:83166055-85338966:-,discs_large_homolog_2,ZNF131->chr5:43065278-43192123:+,zinc_finger_protein_131	MHHES1_BONE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	IER2--ZADH2	2	0	IER2	1138	chr19:13261366:+	ZADH2	11382	chr18:72914295:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	IER2->Oncogene{Bushman},chr19:13261229-13265722:+,immediate_early_response_2,ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	MHHES1_BONE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	MB21D2--FGF12	2	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	MHHES1_BONE	1	1	0.0194	FALSE	0	17	0	46	0	FALSE	ACH-000391
MHHES1_BONE	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	MHHES1_BONE	1	1	0.0194	TRUE	145	312	16	51	0	FALSE	ACH-000391
MHHES1_BONE	NUMB--PARD3	2	0	NUMB	7519	chr14:73876645:-	PARD3	42737	chr10:34667034:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	MHHES1_BONE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	OAZ1--FKBP8	2	0	OAZ1	1259	chr19:2269743:+	FKBP8	10086	chr19:18652805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:6=pct:4.5],Blood=[count:6=pct:3.4],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=3,Brain_-_Hypothalamus=1,Adrenal_Gland=1,Spleen=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	MHHES1_BONE	1	1	0.0194	TRUE	15	2	0	2	0	FALSE	ACH-000391
MHHES1_BONE	PKP4--AC005042.5	2	0	PKP4	1255	chr2:159313730:+	AC005042.5	37061	chr2:159610147:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NEIGHBORS[3024],PKP4->chr2:159313476-159539391:+,plakophilin_4,AC005042.5->chr2:159542415-159610287:+	MHHES1_BONE	1	1	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000391
MHHES1_BONE	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MHHES1_BONE	1	1	0.0194	FALSE	416	2512	207	587	0	FALSE	ACH-000391
MHHES1_BONE	XRN2--DAPK1	2	0	XRN2	1170	chr20:21284111:+	DAPK1	52469	chr9:90311922:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+,DAPK1->Oncogene{Bushman},chr9:90112143-90323548:+,death_associated_protein_kinase_1	MHHES1_BONE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	AC002066.1--AC006159.3	1	2	AC002066.1	1112	chr7:116139408:-	AC006159.3	13900	chr7:116213798:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0097	0.0194	LOCAL_REARRANGEMENT:-:[71495],AC002066.1->chr7:115878314-116139519:-,AC006159.3->chr7:116211014-116254874:-	MHHES1_BONE	0.5	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000391
MHHES1_BONE	CACHD1--NRD1	1	1	CACHD1	25636	chr1:65141666:+	NRD1	52798	chr1:52280485:-	ONLY_REF_SPLICE	YES	53	219	0.04	0.01	0.0097	0.0097	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},CACHD1->cache_domain_containing_1,chr1:64936428-65158741:+,NRD1->chr1:52254863-52344477:-	MHHES1_BONE	0.01	0.04	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000391
MHHES1_BONE	ELF2--NDUFC1	1	1	ELF2	1252	chr4:140098121:-	NDUFC1	30693	chr4:140217114:-	ONLY_REF_SPLICE	YES	22	26	0.08	0.07	0.0097	0.0097	LOCAL_REARRANGEMENT:-:[89662],ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-	MHHES1_BONE	0.07	0.08	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000391
MHHES1_BONE	FTSJ1--AF196972.3	1	1	FTSJ1	1244	chrX:48334784:+	AF196972.3	13409	chrX:48299898:+	ONLY_REF_SPLICE	YES	94	0	0.02	1	0.0097	0.0097	LOCAL_REARRANGEMENT:+:[34543],FTSJ1->FtsJ_RNA_methyltransferase_homolog_1_(E._coli),chrX:48334541-48344752:+,AF196972.3->chrX:48291580-48299998:+	MHHES1_BONE	0.02	1	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000391
MHHES1_BONE	FUBP1--IVNS1ABP	1	1	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	164	137	0.01	0.01	0.0097	0.0097	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	MHHES1_BONE	0.01	0.01	0.0194	FALSE	1	4	0	16	0	FALSE	ACH-000391
MHHES1_BONE	NCOR2--UBC	1	1	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	110	19	0.02	0.1	0.0097	0.0097	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	MHHES1_BONE	0.02	0.1	0.0194	TRUE	52	148	13	33	0	FALSE	ACH-000391
MHHES1_BONE	PPP1R12C--PTMS	1	1	PPP1R12C	8950	chr19:55610152:-	PTMS	21777	chr12:6878769:+	ONLY_REF_SPLICE	YES	41	139	0.05	0.01	0.0097	0.0097	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,PTMS->chr12:6874682-6880116:+,parathymosin	MHHES1_BONE	0.01	0.05	0.0194	FALSE	0	1	0	2	1	FALSE	ACH-000391
MHHES1_BONE	RBFA--PQLC1	1	1	RBFA	1296	chr18:77794653:+	PQLC1	28503	chr18:77664183:-	ONLY_REF_SPLICE	YES	52	64	0.04	0.03	0.0097	0.0097	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_EBV-transformed_lymphocytes=1,Whole_Blood=1},LOCAL_INVERSION:+:-:[82694],RBFA->chr18:77794358-77806397:+,ribosome_binding_factor_A_(putative),PQLC1->PQ_loop_repeat_containing_1,chr18:77662420-77711664:-	MHHES1_BONE	0.03	0.04	0.0194	TRUE	0	3	0	1	0	FALSE	ACH-000391
MHHES1_BONE	RP11-319G9.5--WWOX	1	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	33	1	0.06	0.0097	0.0097	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	MHHES1_BONE	0.06	1	0.0194	FALSE	154	425	28	76	0	FALSE	ACH-000391
RERFLCAD1_LUNG	TIMM23B--LINC00843	156	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3451	0.1293	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RERFLCAD1_LUNG	1	1	1.4744	TRUE	508	994	45	981	0	FALSE	ACH-000791
RERFLCAD1_LUNG	TIMM23--RP11-464F9.1	86	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	205	10	0.3	0.9	0.7415	0.0172	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RERFLCAD1_LUNG	0.3	0.9	0.7587	TRUE	519	3926	326	965	0	FALSE	ACH-000791
RERFLCAD1_LUNG	KPNA1--PARP9	77	18	KPNA1	1189	chr3:122233604:-	PARP9	27507	chr3:122278556:-	ONLY_REF_SPLICE	YES	145	12	0.4	0.89	0.6639	0.1552	LOCAL_REARRANGEMENT:-:[12979],KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1,PARP9->chr3:122246771-122283424:-,poly(ADP-ribose)_polymerase_family_member_9	RERFLCAD1_LUNG	0.4	0.89	0.8191	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	OR51S1--TP53I11	68	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5863	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	RERFLCAD1_LUNG	1	1	0.5863	TRUE	402	216	10	229	0	FALSE	ACH-000791
RERFLCAD1_LUNG	ZNF654--HMGB2	62	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5346	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RERFLCAD1_LUNG	1	1	0.5346	TRUE	0	0	0	518	0	FALSE	ACH-000791
RERFLCAD1_LUNG	MT-TA--MT-TC	51	12	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4397	0.1035	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCAD1_LUNG	1	1	0.5432	FALSE	462	80	0	856	0	FALSE	ACH-000791
RERFLCAD1_LUNG	NRIP1--AF127936.7	32	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.9	1	0.2759	0.0259	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFLCAD1_LUNG	0.9	1	0.3018	FALSE	292	1546	117	613	0	FALSE	ACH-000791
RERFLCAD1_LUNG	PDXDC1--RRN3	31	7	PDXDC1	4986	chr16:15091683:+	RRN3	32917	chr16:15186471:-	ONLY_REF_SPLICE	YES	155	40	0.2	0.49	0.2673	0.0604	NEIGHBORS_OVERLAP:+:-:[34295],PDXDC1->chr16:15068448-15233196:+,pyridoxal-dependent_decarboxylase_domain_containing_1,RRN3->RRN3_homolog,_RNA_polymerase_I_transcription_factor,chr16:15153879-15188174:-	RERFLCAD1_LUNG	0.2	0.49	0.3277	FALSE	0	0	0	1	0	FALSE	ACH-000791
RERFLCAD1_LUNG	RP11-96H19.1--RP11-446N19.1	26	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.92	1	0.2242	0.0604	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCAD1_LUNG	0.92	1	0.2846	FALSE	515	4851	409	746	0	FALSE	ACH-000791
RERFLCAD1_LUNG	RP11-114H23.1--RP11-114H23.2	25	5	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.2156	0.0431	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	RERFLCAD1_LUNG	0.97	1	0.2587	FALSE	81	155	12	160	0	FALSE	ACH-000791
RERFLCAD1_LUNG	PLXDC1--TAF13	23	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1983	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	RERFLCAD1_LUNG	1	1	0.1983	TRUE	7	10	0	216	0	FALSE	ACH-000791
RERFLCAD1_LUNG	NRIP1--AF127936.7	17	13	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	47	0	0.39	1	0.1466	0.1121	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFLCAD1_LUNG	0.39	1	0.2587	FALSE	164	806	69	479	0	FALSE	ACH-000791
RERFLCAD1_LUNG	MICB--RP1-40E16.9	18	8	MICB	3991	chr6:31473648:+	RP1-40E16.9	12113	chr6:3191464:-	ONLY_REF_SPLICE	YES	50	0	0.34	1	0.1552	0.069	MICB->MHC_class_I_polypeptide-related_sequence_B,chr6:31462658-31478901:+,RP1-40E16.9->chr6:3182978-3195990:-	RERFLCAD1_LUNG	0.34	1	0.2242	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	MICB--RP1-40E16.9	16	4	MICB	3991	chr6:31473648:+	RP1-40E16.9	13517	chr6:3183960:-	ONLY_REF_SPLICE	YES	50	3	0.29	0.87	0.138	0.0345	MICB->MHC_class_I_polypeptide-related_sequence_B,chr6:31462658-31478901:+,RP1-40E16.9->chr6:3182978-3195990:-	RERFLCAD1_LUNG	0.29	0.87	0.1725	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	KPNA1--PARP9	15	0	KPNA1	1071	chr3:122233722:-	PARP9	27507	chr3:122278556:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1293	0	LOCAL_REARRANGEMENT:-:[12979],KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1,PARP9->chr3:122246771-122283424:-,poly(ADP-ribose)_polymerase_family_member_9	RERFLCAD1_LUNG	1	1	0.1293	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	NPM1P24--SET	15	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1293	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RERFLCAD1_LUNG	1	1	0.1293	TRUE	0	0	0	434	0	FALSE	ACH-000791
RERFLCAD1_LUNG	MT-ND6--MT-TE	14	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1207	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD1_LUNG	1	1	0.1207	FALSE	499	1288	110	792	0	FALSE	ACH-000791
RERFLCAD1_LUNG	HIATL1--RP11-307E17.8	11	6	HIATL1	4664	chr9:97200810:+	RP11-307E17.8	19630	chr9:97101118:+	ONLY_REF_SPLICE	YES	122	0	0.12	1	0.0948	0.0517	GTEx_FI:{Small_Intestine=[count:1=pct:1.8],Skin=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:+:[13603],HIATL1->chr9:97136833-97223324:+,RP11-307E17.8->chr9:97094758-97123230:+	RERFLCAD1_LUNG	0.12	1	0.1465	TRUE	3	6	0	6	0	FALSE	ACH-000791
RERFLCAD1_LUNG	MT-TA--MT-TC	11	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0948	0.0086	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCAD1_LUNG	1	1	0.1034	FALSE	462	80	0	856	0	FALSE	ACH-000791
RERFLCAD1_LUNG	HSP90AB1--MT-RNR2	11	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0948	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCAD1_LUNG	1	1	0.0948	FALSE	13	9	0	364	0	FALSE	ACH-000791
RERFLCAD1_LUNG	MT-TA--MT-TC	8	10	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0.0862	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCAD1_LUNG	1	1	0.1552	FALSE	462	80	0	856	0	FALSE	ACH-000791
RERFLCAD1_LUNG	MTRF1--ELF1	8	6	MTRF1	12608	chr13:41797392:-	ELF1	29712	chr13:41508164:-	ONLY_REF_SPLICE	YES	8	66	0.64	0.17	0.069	0.0517	MTRF1->chr13:41790505-41837742:-,mitochondrial_translational_release_factor_1,ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-	RERFLCAD1_LUNG	0.17	0.64	0.1207	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	RP11-123O10.4--GRIP1	8	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.069	0.0345	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RERFLCAD1_LUNG	1	1	0.1035	FALSE	416	2512	207	587	0	FALSE	ACH-000791
RERFLCAD1_LUNG	RP11-386G11.10--P4HB	9	0	RP11-386G11.10	1422	chr12:49521986:+	P4HB	16899	chr17:79801485:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0776	0	RP11-386G11.10->chr12:49521565-49541652:+,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	RERFLCAD1_LUNG	1	1	0.0776	TRUE	0	1	0	2	1	TRUE	ACH-000791
RERFLCAD1_LUNG	ZNF654--HMGB2	9	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0776	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RERFLCAD1_LUNG	1	1	0.0776	TRUE	0	0	0	518	0	FALSE	ACH-000791
RERFLCAD1_LUNG	KPNA1--PARP9	4	18	KPNA1	1189	chr3:122233604:-	PARP9	27510	chr3:122278553:-	INCL_NON_REF_SPLICE	YES	145	11	0.13	0.67	0.0345	0.1552	LOCAL_REARRANGEMENT:-:[12979],KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1,PARP9->chr3:122246771-122283424:-,poly(ADP-ribose)_polymerase_family_member_9	RERFLCAD1_LUNG	0.13	0.67	0.1897	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	MT-ND6--MT-TE	8	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0.0172	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD1_LUNG	1	1	0.0862	FALSE	499	1288	110	792	0	FALSE	ACH-000791
RERFLCAD1_LUNG	NRIP1--AF127936.7	7	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	37	0	0.26	1	0.0604	0.0517	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFLCAD1_LUNG	0.26	1	0.1121	FALSE	125	705	46	456	0	FALSE	ACH-000791
RERFLCAD1_LUNG	RP4-565E6.1--HYDIN	8	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.069	0.0172	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	RERFLCAD1_LUNG	1	1	0.0862	TRUE	456	1387	91	133	0	FALSE	ACH-000791
RERFLCAD1_LUNG	MT-RNR2--MT-TV	6	6	MT-RNR2	1060	chrM:1730:+	MT-TV	5583	chrM:1625:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0.0517	LOCAL_REARRANGEMENT:+:[1],MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA,MT-TV->chrM:1602-1670:+,mitochondrially_encoded_tRNA_valine	RERFLCAD1_LUNG	1	1	0.1034	FALSE	56	134	3	5	0	FALSE	ACH-000791
RERFLCAD1_LUNG	MT-TA--MT-TC	4	13	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0.1121	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCAD1_LUNG	1	1	0.1466	FALSE	462	80	0	856	0	FALSE	ACH-000791
RERFLCAD1_LUNG	TUBA1C--CTSD	7	0	TUBA1C	10785	chr12:49666442:+	CTSD	19559	chr11:1778652:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c,CTSD->cathepsin_D,chr11:1773982-1785222:-	RERFLCAD1_LUNG	1	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	FN1--S100A6	6	3	FN1	12528	chr2:216285399:-	S100A6	55195	chr1:153508461:-	INCL_NON_REF_SPLICE	YES	5858	2	0	0.82	0.0517	0.0259	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	RERFLCAD1_LUNG	0	0.82	0.0776	FALSE	0	0	0	7	0	FALSE	ACH-000791
RERFLCAD1_LUNG	RP11-96H19.1--RP11-446N19.1	5	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.0431	0.0604	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCAD1_LUNG	0.8	1	0.1035	FALSE	275	511	55	178	0	FALSE	ACH-000791
RERFLCAD1_LUNG	MT-ATP6--MT-CO1	6	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7678	15815	0	0	0.0517	0.0086	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFLCAD1_LUNG	0	0	0.0603	FALSE	183	104	9	328	0	FALSE	ACH-000791
RERFLCAD1_LUNG	SLC1A5--MT-ND4L	6	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	238	0	0.03	1	0.0517	0.0086	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD1_LUNG	0.03	1	0.0603	FALSE	0	0	0	189	0	FALSE	ACH-000791
RERFLCAD1_LUNG	CTD-2337A12.1--CAST	6	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	RERFLCAD1_LUNG	1	1	0.0517	TRUE	347	1186	183	220	0	FALSE	ACH-000791
RERFLCAD1_LUNG	HIVEP1--HNRNPLP1	6	0	HIVEP1	4047	chr6:12015901:+	HNRNPLP1	26308	chr6:7482787:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	HIVEP1->Oncogene{Bushman},chr6:12008995-12165232:+,human_immunodeficiency_virus_type_I_enhancer_binding_protein_1,HNRNPLP1->chr6:7481327-7482827:-,heterogeneous_nuclear_ribonucleoprotein_L_pseudogene_1	RERFLCAD1_LUNG	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	RP11-662B19.2--WDR37	6	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	RERFLCAD1_LUNG	1	1	0.0517	TRUE	31	42	1	25	0	FALSE	ACH-000791
RERFLCAD1_LUNG	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0.0604	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCAD1_LUNG	1	1	0.0949	FALSE	467	2173	244	435	0	FALSE	ACH-000791
RERFLCAD1_LUNG	MT-ATP6--MT-CO1	5	1	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	1377	14158	0	0	0.0431	0.0086	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFLCAD1_LUNG	0	0	0.0517	FALSE	183	104	9	328	0	FALSE	ACH-000791
RERFLCAD1_LUNG	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0431	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RERFLCAD1_LUNG	1	1	0.0431	TRUE	465	1949	224	605	0	FALSE	ACH-000791
RERFLCAD1_LUNG	GMDS--HFE	4	3	GMDS	1372	chr6:2245555:-	HFE	25917	chr6:26093347:+	ONLY_REF_SPLICE	YES	10	23	0.41	0.23	0.0345	0.0259	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,HFE->Oncogene{Bushman},chr6:26087509-26098571:+,hemochromatosis	RERFLCAD1_LUNG	0.23	0.41	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	MT-ATP6--MT-CO1	4	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	NO	9044	15686	0	0	0.0345	0.0086	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFLCAD1_LUNG	0	0	0.0431	FALSE	183	104	9	328	0	FALSE	ACH-000791
RERFLCAD1_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD1_LUNG	1	1	0.0345	FALSE	499	1288	110	792	0	FALSE	ACH-000791
RERFLCAD1_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD1_LUNG	1	1	0.0345	FALSE	499	1288	110	792	0	FALSE	ACH-000791
RERFLCAD1_LUNG	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RERFLCAD1_LUNG	1	1	0.0345	TRUE	0	0	0	434	0	FALSE	ACH-000791
RERFLCAD1_LUNG	WTAPP1--RUVBL1	4	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	RERFLCAD1_LUNG	1	1	0.0345	TRUE	9	252	6	66	0	FALSE	ACH-000791
RERFLCAD1_LUNG	FN1--S100A6	3	3	FN1	12519	chr2:216285408:-	S100A6	55186	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	5656	2	0	0.75	0.0259	0.0259	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	RERFLCAD1_LUNG	0	0.75	0.0518	FALSE	0	0	0	7	0	FALSE	ACH-000791
RERFLCAD1_LUNG	GMDS--HFE	3	3	GMDS	1372	chr6:2245555:-	HFE	25483	chr6:26092913:+	ONLY_REF_SPLICE	YES	10	15	0.38	0.29	0.0259	0.0259	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,HFE->Oncogene{Bushman},chr6:26087509-26098571:+,hemochromatosis	RERFLCAD1_LUNG	0.29	0.38	0.0518	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	MT-RNR2--MT-TV	3	2	MT-RNR2	1034	chrM:1704:+	MT-TV	5558	chrM:1600:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0259	0.0172	LOCAL_REARRANGEMENT:+:[1],MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA,MT-TV->chrM:1602-1670:+,mitochondrially_encoded_tRNA_valine	RERFLCAD1_LUNG	1	1	0.0431	FALSE	56	134	3	5	0	FALSE	ACH-000791
RERFLCAD1_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	7213	14499	0	0	0.0259	0.0086	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFLCAD1_LUNG	0	0	0.0345	FALSE	183	104	9	328	0	FALSE	ACH-000791
RERFLCAD1_LUNG	HIATL1--RP11-307E17.8	3	0	HIATL1	4664	chr9:97200810:+	RP11-307E17.8	20815	chr9:97121767:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	GTEx_FI:{Small_Intestine=[count:1=pct:1.8],Skin=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:+:[13603],HIATL1->chr9:97136833-97223324:+,RP11-307E17.8->chr9:97094758-97123230:+	RERFLCAD1_LUNG	1	1	0.0259	TRUE	0	1	0	5	1	FALSE	ACH-000791
RERFLCAD1_LUNG	PDRG1--C20orf112	3	0	PDRG1	4450	chr20:30534299:-	C20orf112	26521	chr20:31044198:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	PDRG1->chr20:30532758-30539895:-,p53_and_DNA_damage_regulated_1,C20orf112->chr20:31030862-31172876:-	RERFLCAD1_LUNG	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	RP11-444D3.1--SOX5	3	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	RERFLCAD1_LUNG	1	1	0.0259	TRUE	477	1352	189	275	0	FALSE	ACH-000791
RERFLCAD1_LUNG	GMDS--HFE	2	3	GMDS	1372	chr6:2245555:-	HFE	24131	chr6:26091542:+	ONLY_REF_SPLICE	YES	10	23	0.33	0.18	0.0172	0.0259	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,HFE->Oncogene{Bushman},chr6:26087509-26098571:+,hemochromatosis	RERFLCAD1_LUNG	0.18	0.33	0.0431	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	3	0	0.73	1	0.0086	0.0604	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCAD1_LUNG	0.73	1	0.069	FALSE	407	2205	196	549	0	FALSE	ACH-000791
RERFLCAD1_LUNG	RP11-114H23.1--RP11-114H23.2	2	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	1	6	0.8	0.4	0.0172	0.0172	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	RERFLCAD1_LUNG	0.4	0.8	0.0344	FALSE	81	155	12	160	0	FALSE	ACH-000791
RERFLCAD1_LUNG	TMSB10--TMSB4X	2	2	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	3309	3593	0	0	0.0172	0.0172	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	RERFLCAD1_LUNG	0	0	0.0344	FALSE	0	1	0	17	1	FALSE	ACH-000791
RERFLCAD1_LUNG	MGST1--LMO3	2	1	MGST1	16905	chr12:16536538:+	LMO3	38371	chr12:16713472:-	ONLY_REF_SPLICE	YES	7	1253	0.3	0	0.0172	0.0086	NEIGHBORS_OVERLAP:+:-:[60886],MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,LMO3->LIM_domain_only_3,Oncogene{Bushman},chr12:16701307-16763528:-	RERFLCAD1_LUNG	0	0.3	0.0258	FALSE	0	5	0	3	0	FALSE	ACH-000791
RERFLCAD1_LUNG	CMTM8--CMTM7	2	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	RERFLCAD1_LUNG	1	1	0.0172	FALSE	118	557	29	88	0	FALSE	ACH-000791
RERFLCAD1_LUNG	CPSF6--C9orf3	2	0	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	RERFLCAD1_LUNG	1	1	0.0172	TRUE	53	99	2	44	0	FALSE	ACH-000791
RERFLCAD1_LUNG	FASTKD2--GLS	2	0	FASTKD2	1391	chr2:207630471:+	GLS	21438	chr2:191765290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	FASTKD2->FAST_kinase_domains_2,chr2:207630081-207657233:+,GLS->chr2:191745553-191830278:+,glutaminase	RERFLCAD1_LUNG	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	GMDS--HFE	2	0	GMDS	1372	chr6:2245555:-	HFE	27202	chr6:26094632:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,HFE->Oncogene{Bushman},chr6:26087509-26098571:+,hemochromatosis	RERFLCAD1_LUNG	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	IFI35--PRKCB	2	0	IFI35	2461	chr17:41164294:+	PRKCB	24358	chr16:24185839:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	IFI35->chr17:41158742-41166473:+,interferon_induced_protein_35,PRKCB->chr16:23847322-24231932:+,protein_kinase_C_beta	RERFLCAD1_LUNG	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000791
RERFLCAD1_LUNG	RP11-120D5.1--MID1	2	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RERFLCAD1_LUNG	1	1	0.0172	FALSE	0	48	1	163	0	FALSE	ACH-000791
RERFLCAD1_LUNG	UVSSA--CTBP1	2	0	UVSSA	7499	chr4:1349033:+	CTBP1	24040	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	RERFLCAD1_LUNG	1	1	0.0172	TRUE	23	5	0	14	0	FALSE	ACH-000791
RERFLCAD1_LUNG	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	RERFLCAD1_LUNG	1	1	0.0172	FALSE	272	151	14	158	0	FALSE	ACH-000791
RERFLCAD1_LUNG	RP11-89K10.1--PCAT1	1	2	RP11-89K10.1	2156	chr8:127601535:+	PCAT1	14438	chr8:127889917:+	ONLY_REF_SPLICE	NO	6	0	0.33	1	0.0086	0.0172	RP11-89K10.1->chr8:127570120-127725660:+,PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding)	RERFLCAD1_LUNG	0.33	1	0.0258	TRUE	0	4	0	4	4	TRUE	ACH-000791
RERFLCAD1_LUNG	ZFR--GOLPH3	1	1	ZFR	1533	chr5:32444335:-	GOLPH3	31165	chr5:32126742:-	ONLY_REF_SPLICE	YES	102	239	0.02	0.01	0.0086	0.0086	ZFR->chr5:32354456-32444867:-,zinc_finger_RNA_binding_protein,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	RERFLCAD1_LUNG	0.01	0.02	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000791
L33_PANCREAS	WDR62--HCST	120	51	WDR62	14566	chr19:36572472:+	HCST	35378	chr19:36394253:+	ONLY_REF_SPLICE	YES	38	0	0.82	1	1.2706	0.54	WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+,HCST->chr19:36393382-36395279:+,hematopoietic_cell_signal_transducer	L33_PANCREAS	0.82	1	1.8106	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	MT-TA--MT-TN	108	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1436	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L33_PANCREAS	1	1	1.1436	FALSE	369	2501	205	193	0	FALSE	ACH-000685
L33_PANCREAS	MT-TA--MT-TC	68	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.72	0.0953	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L33_PANCREAS	1	1	0.8153	FALSE	462	80	0	856	0	FALSE	ACH-000685
L33_PANCREAS	TIMM23B--LINC00843	64	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6777	0.2435	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	L33_PANCREAS	1	1	0.9212	TRUE	508	994	45	981	0	FALSE	ACH-000685
L33_PANCREAS	RP11-152F13.7--CDKL4	51	57	RP11-152F13.7	1307	chr15:82945079:+	CDKL4	11492	chr2:39440613:-	ONLY_REF_SPLICE	YES	91	0	0.54	1	0.54	0.6036	RP11-152F13.7->chr15:82944773-82974312:+,CDKL4->chr2:39402787-39456729:-,cyclin_dependent_kinase_like_4	L33_PANCREAS	0.54	1	1.1436	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	MT-ND6--MT-TE	55	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5824	0.0424	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L33_PANCREAS	1	1	0.6248	FALSE	499	1288	110	792	0	FALSE	ACH-000685
L33_PANCREAS	SPA17--TYR	46	22	SPA17	2621	chr11:124545314:+	TYR	19494	chr11:89017941:+	ONLY_REF_SPLICE	YES	38	0	0.64	1	0.4871	0.2329	SPA17->Oncogene{Bushman},chr11:124543694-124567414:+,sperm_autoantigenic_protein_17,TYR->chr11:88910620-89028927:+,tyrosinase	L33_PANCREAS	0.64	1	0.72	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	MT-ND6--MT-TE	36	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.3812	0.1588	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L33_PANCREAS	0.96	1	0.54	FALSE	499	1288	110	792	0	FALSE	ACH-000685
L33_PANCREAS	TIMM23--RP11-464F9.1	37	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	187	3	0.18	0.93	0.3918	0.0318	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	L33_PANCREAS	0.18	0.93	0.4236	TRUE	519	3926	326	965	0	FALSE	ACH-000685
L33_PANCREAS	MT-ND6--MT-TE	26	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2753	0.0318	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L33_PANCREAS	1	1	0.3071	FALSE	499	1288	110	792	0	FALSE	ACH-000685
L33_PANCREAS	MT-TA--MT-TN	15	47	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1588	0.4977	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L33_PANCREAS	1	1	0.6565	FALSE	369	2501	205	193	0	FALSE	ACH-000685
L33_PANCREAS	RP11-152F13.7--CDKL4	11	36	RP11-152F13.7	1257	chr15:82945029:+	CDKL4	11492	chr2:39440613:-	ONLY_REF_SPLICE	YES	88	0	0.35	1	0.1165	0.3812	RP11-152F13.7->chr15:82944773-82974312:+,CDKL4->chr2:39402787-39456729:-,cyclin_dependent_kinase_like_4	L33_PANCREAS	0.35	1	0.4977	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	BRAP--ATXN2	18	1	BRAP	1276	chr12:112123515:-	ATXN2	46709	chr12:111895163:-	ONLY_REF_SPLICE	YES	1	20	0.95	0.49	0.1906	0.0106	NEIGHBORS[42470],BRAP->BRCA1_associated_protein,chr12:112079950-112123790:-,ATXN2->ataxin_2,chr12:111890018-112037480:-	L33_PANCREAS	0.49	0.95	0.2012	FALSE	0	0	0	1	0	FALSE	ACH-000685
L33_PANCREAS	MT-TA--MT-TN	15	12	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1588	0.1271	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L33_PANCREAS	1	1	0.2859	FALSE	369	2501	205	193	0	FALSE	ACH-000685
L33_PANCREAS	MT-TA--MT-TN	7	41	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0741	0.4341	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L33_PANCREAS	1	1	0.5082	FALSE	369	2501	205	193	0	FALSE	ACH-000685
L33_PANCREAS	WDR62--HCST	4	52	WDR62	14566	chr19:36572472:+	HCST	34560	chr19:36393435:+	INCL_NON_REF_SPLICE	YES	38	0	0.6	1	0.0424	0.5506	WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+,HCST->chr19:36393382-36395279:+,hematopoietic_cell_signal_transducer	L33_PANCREAS	0.6	1	0.593	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	P2RX5--TBC1D28	16	2	P2RX5	6527	chr17:3591306:-	TBC1D28	25052	chr17:18539910:-	ONLY_REF_SPLICE	YES	42	0	0.3	1	0.1694	0.0212	P2RX5->chr17:3575493-3599698:-,purinergic_receptor_P2X_5,TBC1D28->TBC1_domain_family_member_28,chr17:18538319-18565263:-	L33_PANCREAS	0.3	1	0.1906	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	MT-TA--MT-TN	8	26	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0847	0.2753	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L33_PANCREAS	1	1	0.36	FALSE	369	2501	205	193	0	FALSE	ACH-000685
L33_PANCREAS	MT-ND6--MT-TE	8	22	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0847	0.2329	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L33_PANCREAS	0.94	1	0.3176	FALSE	499	1288	110	792	0	FALSE	ACH-000685
L33_PANCREAS	FUCA1--CNR2	13	0	FUCA1	5977	chr1:24180850:-	CNR2	15597	chr1:24202152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1377	0	LOCAL_REARRANGEMENT:-:[2232],FUCA1->chr1:24171567-24194784:-,fucosidase,_alpha-L-_1,_tissue,CNR2->Oncogene{Bushman},cannabinoid_receptor_2,chr1:24197016-24285549:-	L33_PANCREAS	1	1	0.1377	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	MT-TA--MT-TN	8	18	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0847	0.1906	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L33_PANCREAS	1	1	0.2753	FALSE	369	2501	205	193	0	FALSE	ACH-000685
L33_PANCREAS	MT-ND6--MT-TE	8	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0847	0.18	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L33_PANCREAS	1	1	0.2647	FALSE	499	1288	110	792	0	FALSE	ACH-000685
L33_PANCREAS	MT-TA--MT-TC	10	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1059	0.0741	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L33_PANCREAS	1	1	0.18	FALSE	462	80	0	856	0	FALSE	ACH-000685
L33_PANCREAS	RP11-123O10.4--GRIP1	11	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1165	0.0106	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	L33_PANCREAS	1	1	0.1271	FALSE	416	2512	207	587	0	FALSE	ACH-000685
L33_PANCREAS	SLC1A5--MT-ND4L	10	3	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	619	0	0.02	1	0.1059	0.0318	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	L33_PANCREAS	0.02	1	0.1377	FALSE	0	0	0	189	0	FALSE	ACH-000685
L33_PANCREAS	BIRC6--TTC27	8	5	BIRC6	12083	chr2:32641231:+	TTC27	96465	chr2:32927874:+	ONLY_REF_SPLICE	YES	8	40	0.62	0.25	0.0847	0.0529	{Klijn_CCL:Colo-Rectal=1},NEIGHBORS[9133],BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27	L33_PANCREAS	0.25	0.62	0.1376	FALSE	0	0	0	1	0	FALSE	ACH-000685
L33_PANCREAS	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0953	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L33_PANCREAS	1	1	0.0953	FALSE	462	80	0	856	0	FALSE	ACH-000685
L33_PANCREAS	MT-TA--MT-TN	3	24	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0.2541	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L33_PANCREAS	1	1	0.2859	FALSE	369	2501	205	193	0	FALSE	ACH-000685
L33_PANCREAS	MT-TA--MT-TN	9	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0953	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L33_PANCREAS	1	1	0.0953	FALSE	369	2501	205	193	0	FALSE	ACH-000685
L33_PANCREAS	NPM1P24--SET	9	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0953	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	L33_PANCREAS	1	1	0.0953	TRUE	0	0	0	434	0	FALSE	ACH-000685
L33_PANCREAS	SLC1A5--MT-ND4L	7	7	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	620	0	0.02	1	0.0741	0.0741	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	L33_PANCREAS	0.02	1	0.1482	FALSE	0	0	0	189	0	FALSE	ACH-000685
L33_PANCREAS	MT-ND6--MT-TE	3	22	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0318	0.2329	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L33_PANCREAS	0.93	1	0.2647	FALSE	499	1288	110	792	0	FALSE	ACH-000685
L33_PANCREAS	SLCO1B1--LINC00941	7	6	SLCO1B1	15160	chr12:21377773:+	LINC00941	21603	chr12:30951079:+	ONLY_REF_SPLICE	YES	9	24	0.59	0.35	0.0741	0.0635	SLCO1B1->chr12:21284136-21392180:+,solute_carrier_organic_anion_transporter_family_member_1B1,LINC00941->chr12:30947977-30955645:+,long_intergenic_non-protein_coding_RNA_941	L33_PANCREAS	0.35	0.59	0.1376	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	MT-ND6--MT-TE	3	20	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0318	0.2118	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L33_PANCREAS	0.96	1	0.2436	FALSE	499	1288	110	792	0	FALSE	ACH-000685
L33_PANCREAS	MT-ND6--MT-TE	8	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0847	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L33_PANCREAS	1	1	0.0847	FALSE	499	1288	110	792	0	FALSE	ACH-000685
L33_PANCREAS	MT-TA--MT-TN	8	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0847	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L33_PANCREAS	1	1	0.0847	FALSE	369	2501	205	193	0	FALSE	ACH-000685
L33_PANCREAS	MT-TA--MT-TC	5	11	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0.1165	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L33_PANCREAS	1	1	0.1694	FALSE	462	80	0	856	0	FALSE	ACH-000685
L33_PANCREAS	MT-ND6--MT-TE	3	17	MT-ND6	1096	chrM:14578:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0.18	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L33_PANCREAS	1	1	0.2118	FALSE	499	1288	110	792	0	FALSE	ACH-000685
L33_PANCREAS	MT-ND6--MT-TE	3	17	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	7	0	0.74	1	0.0318	0.18	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L33_PANCREAS	0.74	1	0.2118	FALSE	499	1288	110	792	0	FALSE	ACH-000685
L33_PANCREAS	MT-ND6--MT-TE	3	16	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0318	0.1694	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L33_PANCREAS	0.9	1	0.2012	FALSE	499	1288	110	792	0	FALSE	ACH-000685
L33_PANCREAS	JSRP1--RPS28	5	5	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0.0529	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	L33_PANCREAS	1	1	0.1058	TRUE	0	1	0	84	1	FALSE	ACH-000685
L33_PANCREAS	SLCO1B1--LINC00941	5	5	SLCO1B1	15160	chr12:21377773:+	LINC00941	22774	chr12:30952847:+	ONLY_REF_SPLICE	YES	9	28	0.53	0.26	0.0529	0.0529	SLCO1B1->chr12:21284136-21392180:+,solute_carrier_organic_anion_transporter_family_member_1B1,LINC00941->chr12:30947977-30955645:+,long_intergenic_non-protein_coding_RNA_941	L33_PANCREAS	0.26	0.53	0.1058	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	MT-TA--MT-TN	6	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0635	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L33_PANCREAS	1	1	0.0635	FALSE	369	2501	205	193	0	FALSE	ACH-000685
L33_PANCREAS	EEF2--RPS28	5	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	3070	0	0	1	0.0529	0.0106	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	L33_PANCREAS	0	1	0.0635	FALSE	0	0	0	100	0	FALSE	ACH-000685
L33_PANCREAS	TPPP--BRD9	5	1	TPPP	1118	chr5:693393:-	BRD9	23088	chr5:880004:-	ONLY_REF_SPLICE	YES	0	98	1	0.06	0.0529	0.0106	GTEx_FI:{Colon=[count:8=pct:4.2],Blood_Vessel=[count:8=pct:2.2],Esophagus=[count:8=pct:2.0],Brain=[count:3=pct:0.5],Lung=[count:3=pct:1.8],Uterus=[count:2=pct:4.7],Adipose_Tissue=[count:2=pct:0.7],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Muscle=[count:1=pct:0.4],Skin=[count:1=pct:0.3],Thyroid=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Adipose_-_Subcutaneous=1},TPPP->chr5:660883-693510:-,tubulin_polymerization_promoting_protein,BRD9->bromodomain_containing_9,chr5:850406-892939:-	L33_PANCREAS	0.06	1	0.0635	TRUE	29	26	4	4	0	FALSE	ACH-000685
L33_PANCREAS	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L33_PANCREAS	1	1	0.0529	FALSE	499	1288	110	792	0	FALSE	ACH-000685
L33_PANCREAS	MT-ND6--MT-TE	5	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L33_PANCREAS	1	1	0.0529	FALSE	499	1288	110	792	0	FALSE	ACH-000685
L33_PANCREAS	MT-TA--MT-TN	5	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L33_PANCREAS	1	1	0.0529	FALSE	369	2501	205	193	0	FALSE	ACH-000685
L33_PANCREAS	WTAPP1--RUVBL1	5	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0529	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	L33_PANCREAS	1	1	0.0529	TRUE	9	252	6	66	0	FALSE	ACH-000685
L33_PANCREAS	MT-ND6--MT-TE	3	6	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0318	0.0635	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L33_PANCREAS	0.9	1	0.0953	FALSE	499	1288	110	792	0	FALSE	ACH-000685
L33_PANCREAS	ARHGAP10--EDNRA	4	1	ARHGAP10	1393	chr4:148653606:+	EDNRA	41705	chr4:148457029:+	ONLY_REF_SPLICE	YES	3	1	0.62	0.83	0.0424	0.0106	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	L33_PANCREAS	0.62	0.83	0.053	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L33_PANCREAS	1	1	0.0424	FALSE	499	1288	110	792	0	FALSE	ACH-000685
L33_PANCREAS	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L33_PANCREAS	1	1	0.0424	FALSE	369	2501	205	193	0	FALSE	ACH-000685
L33_PANCREAS	GNB2L1--MT-CO3	3	2	GNB2L1	4969	chr5:180669214:-	MT-CO3	13345	chrM:9277:+	INCL_NON_REF_SPLICE	YES	3641	2	0	0.71	0.0318	0.0212	GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	L33_PANCREAS	0	0.71	0.053	FALSE	0	0	0	4	0	FALSE	ACH-000685
L33_PANCREAS	RP11-120D5.1--MID1	3	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	15	0.71	0.25	0.0318	0.0212	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	L33_PANCREAS	0.25	0.71	0.053	FALSE	16	356	14	466	0	FALSE	ACH-000685
L33_PANCREAS	SPA17--TYR	3	1	SPA17	2621	chr11:124545314:+	TYR	20676	chr11:89028311:+	ONLY_REF_SPLICE	YES	38	7	0.1	0.36	0.0318	0.0106	SPA17->Oncogene{Bushman},chr11:124543694-124567414:+,sperm_autoantigenic_protein_17,TYR->chr11:88910620-89028927:+,tyrosinase	L33_PANCREAS	0.1	0.36	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L33_PANCREAS	1	1	0.0318	FALSE	499	1288	110	792	0	FALSE	ACH-000685
L33_PANCREAS	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	L33_PANCREAS	1	1	0.0318	FALSE	369	2501	205	193	0	FALSE	ACH-000685
L33_PANCREAS	SLC41A1--KRIT1	3	0	SLC41A1	3541	chr1:205779616:-	KRIT1	22293	chr7:91870430:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	SLC41A1->chr1:205758221-205782876:-,solute_carrier_family_41_member_1,KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-	L33_PANCREAS	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	YME1L1--CENPV	3	0	YME1L1	21038	chr10:27406505:-	CENPV	33154	chr17:16248025:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	YME1L1->YME1_like_1_ATPase,chr10:27399383-27444195:-,CENPV->centromere_protein_V,chr17:16245848-16256970:-	L33_PANCREAS	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	BCAT1--SLCO1A2	2	3	BCAT1	1533	chr12:25101861:-	SLCO1A2	33953	chr12:21487638:-	ONLY_REF_SPLICE	YES	61	10	0.08	0.33	0.0212	0.0318	BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-,SLCO1A2->chr12:21417534-21572528:-,solute_carrier_organic_anion_transporter_family_member_1A2	L33_PANCREAS	0.08	0.33	0.053	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	ARHGAP10--EDNRA	2	2	ARHGAP10	1393	chr4:148653606:+	EDNRA	40506	chr4:148453658:+	ONLY_REF_SPLICE	YES	3	2	0.57	0.67	0.0212	0.0212	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	L33_PANCREAS	0.57	0.67	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	RERE--RP6-109B7.2	1	6	RERE	2669	chr1:8852463:-	RP6-109B7.2	42332	chr22:46452395:-	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0106	0.0635	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,RP6-109B7.2->chr22:46451620-46454040:-	L33_PANCREAS	0.64	1	0.0741	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	BCAT1--SLCO1A2	1	5	BCAT1	1533	chr12:25101861:-	SLCO1A2	32617	chr12:21527459:-	ONLY_REF_SPLICE	NO	61	10	0.09	0.38	0.0106	0.0529	BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-,SLCO1A2->chr12:21417534-21572528:-,solute_carrier_organic_anion_transporter_family_member_1A2	L33_PANCREAS	0.09	0.38	0.0635	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	STAG1--MSL2	2	1	STAG1	31689	chr3:136082208:-	MSL2	48842	chr3:135871580:-	ONLY_REF_SPLICE	YES	40	57	0.07	0.05	0.0212	0.0106	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila)	L33_PANCREAS	0.05	0.07	0.0318	TRUE	0	1	0	1	1	FALSE	ACH-000685
L33_PANCREAS	BCAT1--SLCO1A2	1	4	BCAT1	1533	chr12:25101861:-	SLCO1A2	33948	chr12:21487643:-	ONLY_REF_SPLICE	YES	61	10	0.08	0.33	0.0106	0.0424	BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-,SLCO1A2->chr12:21417534-21572528:-,solute_carrier_organic_anion_transporter_family_member_1A2	L33_PANCREAS	0.08	0.33	0.053	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	BRAP--ATXN2	2	0	BRAP	1276	chr12:112123515:-	ATXN2	47812	chr12:111894060:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	NEIGHBORS[42470],BRAP->BRCA1_associated_protein,chr12:112079950-112123790:-,ATXN2->ataxin_2,chr12:111890018-112037480:-	L33_PANCREAS	1	1	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000685
L33_PANCREAS	BRI3BP--UBC	2	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	L33_PANCREAS	1	1	0.0212	TRUE	5	99	5	34	0	FALSE	ACH-000685
L33_PANCREAS	C17orf76-AS1--WDR43	2	0	C17orf76-AS1	1593	chr17:16342728:+	WDR43	25416	chr2:29150435:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	C17orf76-AS1->chr17:16342136-16381992:+,WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+	L33_PANCREAS	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	DIS3L--HSP90B1	2	0	DIS3L	12187	chr15:66615272:+	HSP90B1	24819	chr12:104326055:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	DIS3L->DIS3_like_exosome_3'-5'_exoribonuclease,chr15:66585555-66626236:+,HSP90B1->Oncogene{Bushman},chr12:104323885-104347423:+,heat_shock_protein_90kDa_beta_family_member_1	L33_PANCREAS	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	IKZF2--CYBRD1	2	0	IKZF2	5217	chr2:214012432:-	CYBRD1	31713	chr2:172398095:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,CYBRD1->chr2:172378757-172414643:+,cytochrome_b_reductase_1	L33_PANCREAS	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	MED31--SNX27	2	0	MED31	2279	chr17:6553676:-	SNX27	9572	chr1:151611364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	MED31->chr17:6546635-6554954:-,mediator_complex_subunit_31,SNX27->chr1:151584541-151671567:+,sorting_nexin_family_member_27	L33_PANCREAS	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	SLCO3A1--ST8SIA1	1	4	SLCO3A1	13963	chr15:92671719:+	ST8SIA1	41568	chr12:22408323:-	ONLY_REF_SPLICE	YES	71	0	0.07	1	0.0106	0.0424	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,ST8SIA1->ST8_alpha-N-acetyl-neuraminide_alpha-2,8-sialyltransferase_1,chr12:22216707-22589975:-	L33_PANCREAS	0.07	1	0.053	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	WDR44--NOL11	2	0	WDR44	16188	chrX:117570787:+	NOL11	37569	chr17:65733624:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	WDR44->WD_repeat_domain_44,chrX:117480036-117583924:+,NOL11->chr17:65713949-65740647:+,nucleolar_protein_11	L33_PANCREAS	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	LINC00473--PDE10A	1	3	LINC00473	9097	chr6:166324296:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	9	0	0.31	1	0.0106	0.0318	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	L33_PANCREAS	0.31	1	0.0424	FALSE	2	5	0	11	0	FALSE	ACH-000685
L33_PANCREAS	DOCK4--IMMP2L	1	1	DOCK4	13779	chr7:111575595:-	IMMP2L	65595	chr7:111161505:-	ONLY_REF_SPLICE	NO	0	3	1	0.4	0.0106	0.0106	DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2	L33_PANCREAS	0.4	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	LRP11--KATNA1	1	1	LRP11	3814	chr6:150174139:-	KATNA1	19930	chr6:149925918:-	ONLY_REF_SPLICE	YES	49	46	0.04	0.04	0.0106	0.0106	LRP11->LDL_receptor_related_protein_11,chr6:150139934-150186199:-,KATNA1->chr6:149916009-149970108:-,katanin_catalytic_subunit_A1	L33_PANCREAS	0.04	0.04	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000685
L33_PANCREAS	NOTCH1--FAM120A	1	1	NOTCH1	11936	chr9:139407473:-	FAM120A	46027	chr9:96305504:+	ONLY_REF_SPLICE	YES	45	133	0.04	0.01	0.0106	0.0106	NOTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:139388896-139440314:-,notch_1,FAM120A->chr9:96214004-96328397:+,family_with_sequence_similarity_120A	L33_PANCREAS	0.01	0.04	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000685
L33_PANCREAS	RERE--RP6-109B7.2	1	1	RERE	1484	chr1:8877219:-	RP6-109B7.2	42332	chr22:46452395:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0106	0.0106	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,RP6-109B7.2->chr22:46451620-46454040:-	L33_PANCREAS	0.4	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000685
L33_PANCREAS	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	6	1	0.25	0.0106	0.0106	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	L33_PANCREAS	0.25	1	0.0212	TRUE	465	1949	224	605	0	FALSE	ACH-000685
L33_PANCREAS	STAG1--MSL2	1	1	STAG1	30587	chr3:136085785:-	MSL2	48842	chr3:135871580:-	ONLY_REF_SPLICE	YES	36	57	0.05	0.03	0.0106	0.0106	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila)	L33_PANCREAS	0.03	0.05	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000685
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPRD1A--DTNA	289	168	RPRD1A	1323	chr18:33647217:-	DTNA	35714	chr18:32335940:+	ONLY_REF_SPLICE	YES	247	24	0.65	0.95	3.3795	1.9645	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.95	5.344	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTGES3--MFSD5	191	258	PTGES3	1378	chr12:57081782:-	MFSD5	12912	chr12:53645489:+	ONLY_REF_SPLICE	YES	1115	18	0.29	0.96	2.2335	3.017	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,MFSD5->chr12:53645035-53648189:+,major_facilitator_superfamily_domain_containing_5	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.96	5.2505	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MRPS2--RP11-473E2.4	170	117	MRPS2	2990	chr9:138393819:+	RP11-473E2.4	9794	chr9:137436766:+	ONLY_REF_SPLICE	YES	245	0	0.54	1	1.9879	1.3682	MRPS2->chr9:138391830-138396519:+,mitochondrial_ribosomal_protein_S2,RP11-473E2.4->chr9:137419028-137437090:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	1	3.3561	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--IGHG1	140	3	IGL@	65948	chr22:23248841:+	IGHG1	78783	chr14:106204004:-	INCL_NON_REF_SPLICE	YES	2061	2124	0.06	0.06	1.6371	0.0351	IGL@->Oncogene{Bushman},IGHG1->Oncogene{Bushman},chr14:106202680-106209408:-,immunoglobulin_heavy_constant_gamma_1_(G1m_marker)	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.06	1.6722	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	80	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9355	0.3391	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.2746	TRUE	508	994	45	981	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF41--LARP4	81	17	RNF41	3641	chr12:56607742:-	LARP4	35750	chr12:50867198:+	ONLY_REF_SPLICE	YES	186	61	0.35	0.62	0.9472	0.1988	{Klijn_CCL:Lymphoid=1},RNF41->chr12:56598285-56615717:-,ring_finger_protein_41,LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.62	1.146	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTGES3--MFSD5	1	261	PTGES3	2126	chr12:57081034:-	MFSD5	12912	chr12:53645489:+	ONLY_REF_SPLICE	YES	1149	18	0.19	0.94	0.0117	3.0521	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,MFSD5->chr12:53645035-53648189:+,major_facilitator_superfamily_domain_containing_5	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.94	3.0638	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED13L--SLC26A10	53	35	MED13L	29179	chr12:116412976:-	SLC26A10	44872	chr12:58015511:+	INCL_NON_REF_SPLICE	YES	152	3	0.37	0.97	0.6198	0.4093	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,SLC26A10->chr12:58013310-58019934:+,solute_carrier_family_26_member_10	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.97	1.0291	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FMN1--TFDP2	56	19	FMN1	30151	chr15:33149216:-	TFDP2	55919	chr3:141724386:-	ONLY_REF_SPLICE	YES	50	40	0.6	0.65	0.6548	0.2222	FMN1->chr15:33057747-33486897:-,formin_1,TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.65	0.877	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	45	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	153	4	0.23	0.92	0.5262	0.0117	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.92	0.5379	TRUE	519	3926	326	965	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	37	8	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	8	0	0.85	1	0.4327	0.0935	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.5262	TRUE	0	3	0	38	3	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	24	38	IGH@	110148	chr14:106208266:-	IGL@	156585	chr22:22764446:+	INCL_NON_REF_SPLICE	YES	21003	13441	0	0	0.2806	0.4444	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.725	FALSE	0	7	2	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED13L--SLC26A10	29	16	MED13L	29179	chr12:116412976:-	SLC26A10	45703	chr12:58016342:+	ONLY_REF_SPLICE	YES	152	19	0.23	0.7	0.3391	0.1871	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,SLC26A10->chr12:58013310-58019934:+,solute_carrier_family_26_member_10	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.7	0.5262	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	32	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3742	0.0234	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3976	FALSE	462	80	0	856	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	5	109	IGH@	119453	chr14:106109594:-	IGL@	156237	chr22:22764098:+	INCL_NON_REF_SPLICE	YES	5103	1492	0.02	0.07	0.0585	1.2746	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.07	1.3331	FALSE	0	1	2	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG248L24.12--SPP1	30	3	XXbac-BPG248L24.12	1474	chr6:31324897:+	SPP1	5039	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	52	0	0.39	1	0.3508	0.0351	XXbac-BPG248L24.12->chr6:31324424-31325414:+,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.3859	TRUE	0	0	0	5	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	26	16	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.304	0.1871	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4911	TRUE	5	4	0	46	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	5	93	IGH@	110550	chr14:106207864:-	IGL@	156237	chr22:22764098:+	INCL_NON_REF_SPLICE	YES	12678	1492	0.01	0.06	0.0585	1.0875	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	1.146	FALSE	0	7	2	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--IGHG1	20	26	IGL@	64697	chr22:23247284:+	IGHG1	75798	chr14:106208350:-	INCL_NON_REF_SPLICE	NO	12742	17710	0	0	0.2339	0.304	IGL@->Oncogene{Bushman},IGHG1->Oncogene{Bushman},chr14:106202680-106209408:-,immunoglobulin_heavy_constant_gamma_1_(G1m_marker)	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.5379	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV2-14	19	24	AC096579.7	1523	chr2:89165131:-	IGKV2-14	8879	chr2:89377826:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.2222	0.2806	AC096579.7->chr2:89130700-89165653:-,IGKV2-14->chr2:89377506-89378280:-,immunoglobulin_kappa_variable_2-14_(pseudogene)	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.5028	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPRD1A--DTNA	2	91	RPRD1A	1323	chr18:33647217:-	DTNA	37913	chr18:32345925:+	ONLY_REF_SPLICE	NO	247	24	0.27	0.79	0.0234	1.0641	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.79	1.0875	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	4	82	IGH@	110148	chr14:106208266:-	IGL@	144463	chr22:22682006:+	INCL_NON_REF_SPLICE	YES	21003	1446	0	0.06	0.0468	0.9589	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	1.0057	FALSE	0	6	1	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UNC13C--TIPIN	21	7	UNC13C	25898	chr15:54786932:+	TIPIN	55343	chr15:66633694:-	ONLY_REF_SPLICE	YES	0	92	1	0.23	0.2456	0.0819	UNC13C->chr15:54305101-54920806:+,unc-13_homolog_C_(C._elegans),TIPIN->TIMELESS_interacting_protein,chr15:66628544-66679084:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.3275	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	16	24	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	71	68	0.36	0.37	0.1871	0.2806	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.37	0.4677	TRUE	267	562	48	632	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	19	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2222	0.0585	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.2807	FALSE	499	1288	110	792	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	16	16	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	65	69	0.33	0.32	0.1871	0.1871	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.33	0.3742	TRUE	267	562	48	632	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF2B1--RNF41	18	7	EIF2B1	7078	chr12:124109334:-	RNF41	19820	chr12:56602082:-	ONLY_REF_SPLICE	YES	242	137	0.09	0.15	0.2105	0.0819	EIF2B1->chr12:124104953-124118313:-,eukaryotic_translation_initiation_factor_2B_subunit_alpha,RNF41->chr12:56598285-56615717:-,ring_finger_protein_41	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.15	0.2924	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	19	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2222	0.0234	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2456	FALSE	499	1288	110	792	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	5	55	IGH@	110165	chr14:106208249:-	IGL@	156509	chr22:22764370:+	INCL_NON_REF_SPLICE	YES	20848	13900	0	0	0.0585	0.6432	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.7017	FALSE	0	7	2	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	4	59	IGH@	121957	chr14:106091105:-	IGL@	156587	chr22:22764448:+	INCL_NON_REF_SPLICE	YES	4524	13428	0.01	0	0.0468	0.6899	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.7367	FALSE	0	3	1	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK4--IMMP2L	16	4	DOCK4	1310	chr7:111846157:-	IMMP2L	72389	chr7:110603621:-	ONLY_REF_SPLICE	YES	23	5	0.47	0.8	0.1871	0.0468	DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.8	0.2339	TRUE	0	2	0	1	2	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--IGHG1	4	46	IGL@	25832	chr22:22764494:+	IGHG1	74873	chr14:106209275:-	INCL_NON_REF_SPLICE	YES	10312	5465	0	0.01	0.0468	0.5379	IGL@->Oncogene{Bushman},IGHG1->Oncogene{Bushman},chr14:106202680-106209408:-,immunoglobulin_heavy_constant_gamma_1_(G1m_marker)	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.5847	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPRD1A--DTNA	4	45	RPRD1A	1323	chr18:33647217:-	DTNA	38994	chr18:32374001:+	ONLY_REF_SPLICE	YES	247	81	0.17	0.38	0.0468	0.5262	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.38	0.573	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	15	0	IGH@	109284	chr14:106209130:-	IGL@	196614	chr22:23248706:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1754	0	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1754	FALSE	0	8	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--IGHG1	3	45	IGL@	65826	chr22:23248719:+	IGHG1	75592	chr14:106208556:-	INCL_NON_REF_SPLICE	YES	875	24623	0.05	0	0.0351	0.5262	IGL@->Oncogene{Bushman},IGHG1->Oncogene{Bushman},chr14:106202680-106209408:-,immunoglobulin_heavy_constant_gamma_1_(G1m_marker)	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.5613	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--IGHG1	3	45	IGL@	25823	chr22:22764485:+	IGHG1	74865	chr14:106209283:-	INCL_NON_REF_SPLICE	YES	11030	4274	0	0.01	0.0351	0.5262	IGL@->Oncogene{Bushman},IGHG1->Oncogene{Bushman},chr14:106202680-106209408:-,immunoglobulin_heavy_constant_gamma_1_(G1m_marker)	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.5613	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	11	11	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	13	0	0.63	1	0.1286	0.1286	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	1	0.2572	TRUE	0	5	0	45	5	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--IGHG1	11	10	IGL@	65898	chr22:23248791:+	IGHG1	76224	chr14:106207924:-	INCL_NON_REF_SPLICE	YES	3629	6906	0.01	0	0.1286	0.1169	IGL@->Oncogene{Bushman},IGHG1->Oncogene{Bushman},chr14:106202680-106209408:-,immunoglobulin_heavy_constant_gamma_1_(G1m_marker)	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.2455	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF41--LARP4	8	20	RNF41	4603	chr12:56606780:-	LARP4	35750	chr12:50867198:+	ONLY_REF_SPLICE	YES	195	61	0.13	0.31	0.0935	0.2339	{Klijn_CCL:Lymphoid=1},RNF41->chr12:56598285-56615717:-,ring_finger_protein_41,LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.31	0.3274	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	3	39	IGH@	94353	chr14:106330425:-	IGL@	136449	chr22:22550225:+	INCL_NON_REF_SPLICE	YES	25922	11	0	0.79	0.0351	0.4561	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.79	0.4912	FALSE	0	2	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	U2SURP--FAM194A	11	7	U2SURP	28777	chr3:142762118:+	FAM194A	44225	chr3:150404141:-	ONLY_REF_SPLICE	YES	169	1	0.1	0.95	0.1286	0.0819	U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+,FAM194A->chr3:150377672-150421758:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.95	0.2105	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	9	14	IGH@	110310	chr14:106208104:-	IGL@	193794	chr22:23243168:+	INCL_NON_REF_SPLICE	YES	22342	10058	0	0	0.1052	0.1637	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.2689	FALSE	0	9	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTGES3--MFSD5	4	33	PTGES3	1378	chr12:57081782:-	MFSD5	13101	chr12:53645678:+	INCL_NON_REF_SPLICE	YES	1115	108	0.03	0.26	0.0468	0.3859	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,MFSD5->chr12:53645035-53648189:+,major_facilitator_superfamily_domain_containing_5	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.26	0.4327	TRUE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--IGHG1	8	16	IGL@	25783	chr22:22764445:+	IGHG1	75883	chr14:106208265:-	INCL_NON_REF_SPLICE	YES	13321	19621	0	0	0.0935	0.1871	IGL@->Oncogene{Bushman},IGHG1->Oncogene{Bushman},chr14:106202680-106209408:-,immunoglobulin_heavy_constant_gamma_1_(G1m_marker)	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.2806	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	11	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	62	0	0.17	1	0.1286	0.0234	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.152	TRUE	0	42	0	133	42	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	7	18	AP003900.6	1122	chr21:11169841:+	AC011718.2	10100	chr22:20656924:-	INCL_NON_REF_SPLICE	YES	8	0	0.76	1	0.0819	0.2105	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.2924	TRUE	0	0	0	11	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	6	19	IGH@	119213	chr14:106109834:-	IGL@	193794	chr22:23243168:+	INCL_NON_REF_SPLICE	NO	7508	10058	0	0	0.0702	0.2222	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.2924	FALSE	0	25	1	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	8	11	IGH@	109867	chr14:106208547:-	IGL@	187136	chr22:23214022:+	INCL_NON_REF_SPLICE	NO	11944	10539	0	0	0.0935	0.1286	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.2221	FALSE	0	0	3	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1052	0.0585	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1637	FALSE	499	1288	110	792	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	9	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.1052	0.0351	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.1403	FALSE	515	4851	409	746	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMELESS--PTGES3	9	2	TIMELESS	10442	chr12:56817581:-	PTGES3	21038	chr12:57066849:-	ONLY_REF_SPLICE	YES	166	1113	0.06	0.01	0.1052	0.0234	TIMELESS->chr12:56810903-56843187:-,timeless_circadian_clock,PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.1286	TRUE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--IGHG1	3	25	IGL@	65752	chr22:23248645:+	IGHG1	76016	chr14:106208132:-	INCL_NON_REF_SPLICE	YES	12013	24776	0	0	0.0351	0.2923	IGL@->Oncogene{Bushman},IGHG1->Oncogene{Bushman},chr14:106202680-106209408:-,immunoglobulin_heavy_constant_gamma_1_(G1m_marker)	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.3274	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--IGHG1	3	25	IGL@	63114	chr22:23243289:+	IGHG1	76016	chr14:106208132:-	INCL_NON_REF_SPLICE	YES	11317	24776	0	0	0.0351	0.2923	IGL@->Oncogene{Bushman},IGHG1->Oncogene{Bushman},chr14:106202680-106209408:-,immunoglobulin_heavy_constant_gamma_1_(G1m_marker)	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.3274	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1052	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1052	TRUE	0	0	0	434	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	6	12	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0702	0.1403	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2105	TRUE	5	12	0	42	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	3	23	IGH@	122074	chr14:106090988:-	IGL@	191329	chr22:23237737:+	INCL_NON_REF_SPLICE	NO	633	9648	0.04	0	0.0351	0.269	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.3041	FALSE	1	41	5	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--IGHG1	8	3	IGL@	63310	chr22:23243485:+	IGHG1	78783	chr14:106204004:-	INCL_NON_REF_SPLICE	YES	12932	2124	0	0.01	0.0935	0.0351	IGL@->Oncogene{Bushman},IGHG1->Oncogene{Bushman},chr14:106202680-106209408:-,immunoglobulin_heavy_constant_gamma_1_(G1m_marker)	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1286	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--IGHG1	3	21	IGL@	65881	chr22:23248774:+	IGHG1	76081	chr14:106208067:-	INCL_NON_REF_SPLICE	YES	3756	22633	0.01	0	0.0351	0.2456	IGL@->Oncogene{Bushman},IGHG1->Oncogene{Bushman},chr14:106202680-106209408:-,immunoglobulin_heavy_constant_gamma_1_(G1m_marker)	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.2807	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARL17A--PIK3R4	7	4	ARL17A	4664	chr17:44634731:-	PIK3R4	32955	chr3:130409498:-	ONLY_REF_SPLICE	YES	39	47	0.22	0.19	0.0819	0.0468	ARL17A->ADP_ribosylation_factor_like_GTPase_17A,chr17:44594068-44657088:-,PIK3R4->chr3:130397779-130465673:-,phosphoinositide-3-kinase_regulatory_subunit_4	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.22	0.1287	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	3	20	IGH@	119332	chr14:106109715:-	IGL@	191329	chr22:23237737:+	INCL_NON_REF_SPLICE	NO	9325	9648	0	0	0.0351	0.2339	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.269	FALSE	2	8	1	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-319G9.5--WWOX	8	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0935	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0935	FALSE	154	425	28	76	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	8	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0935	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0935	TRUE	0	0	0	518	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FMN1--TFDP2	3	19	FMN1	30151	chr15:33149216:-	TFDP2	53305	chr3:141772991:-	ONLY_REF_SPLICE	YES	50	39	0.31	0.36	0.0351	0.2222	FMN1->chr15:33057747-33486897:-,formin_1,TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.36	0.2573	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	6	7	IGH@	107576	chr14:106235868:-	IGL@	193794	chr22:23243168:+	INCL_NON_REF_SPLICE	NO	24492	10058	0	0	0.0702	0.0819	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1521	FALSE	0	3	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--IGHG1	6	7	IGL@	65914	chr22:23248807:+	IGHG1	76242	chr14:106207906:-	INCL_NON_REF_SPLICE	YES	3111	6086	0	0	0.0702	0.0819	IGL@->Oncogene{Bushman},IGHG1->Oncogene{Bushman},chr14:106202680-106209408:-,immunoglobulin_heavy_constant_gamma_1_(G1m_marker)	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1521	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	4	14	IGH@	110185	chr14:106208229:-	IGL@	193917	chr22:23243291:+	INCL_NON_REF_SPLICE	YES	21064	11357	0	0	0.0468	0.1637	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.2105	FALSE	0	9	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0819	0.0234	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1053	FALSE	499	1288	110	792	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTB-43E15.3--CTB-43E15.2	5	8	CTB-43E15.3	3044	chr5:173145844:-	CTB-43E15.2	10911	chr5:173128532:+	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.0585	0.0935	LOCAL_INVERSION:-:+:[1765],CTB-43E15.3->chr5:173134617-173173214:-,CTB-43E15.2->chr5:173116462-173132852:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.152	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	3	15	IGH@	110429	chr14:106207985:-	IGL@	191329	chr22:23237737:+	INCL_NON_REF_SPLICE	NO	12865	9648	0	0	0.0351	0.1754	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.2105	FALSE	1	35	4	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTGES3--MFSD5	4	10	PTGES3	1378	chr12:57081782:-	MFSD5	14025	chr12:53646602:+	ONLY_REF_SPLICE	YES	1115	246	0.01	0.05	0.0468	0.1169	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,MFSD5->chr12:53645035-53648189:+,major_facilitator_superfamily_domain_containing_5	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.1637	TRUE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-91G21.1--SERP1	6	2	RP11-91G21.1	1348	chr3:142719962:-	SERP1	12975	chr3:150262285:-	INCL_NON_REF_SPLICE	YES	25	912	0.24	0.01	0.0702	0.0234	RP11-91G21.1->chr3:142719749-142720309:-,SERP1->chr3:150259781-150321015:-,stress-associated_endoplasmic_reticulum_protein_1	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.24	0.0936	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMARCC2--TIPIN	6	2	SMARCC2	4680	chr12:56578628:-	TIPIN	28441	chr15:66645293:-	ONLY_REF_SPLICE	YES	212	2	0.04	0.8	0.0702	0.0234	SMARCC2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_2,chr12:56556767-56583351:-,TIPIN->TIMELESS_interacting_protein,chr15:66628544-66679084:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.8	0.0936	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	6	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	YES	19	1251	0.27	0.01	0.0702	0.0117	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.27	0.0819	FALSE	0	0	0	434	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0702	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0702	FALSE	462	80	0	856	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-476K15.1--CTD-2015H3.2	5	4	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	13	2	0.41	0.82	0.0585	0.0468	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.82	0.1053	FALSE	0	46	0	73	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SYNRG--ACACA	4	6	SYNRG	23787	chr17:35900482:-	ACACA	55607	chr17:35646430:-	ONLY_REF_SPLICE	YES	32	32	0.24	0.24	0.0468	0.0702	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.24	0.117	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2V1--PABPC1L	3	9	UBE2V1	1475	chr20:48732022:-	PABPC1L	25184	chr20:43560474:+	INCL_NON_REF_SPLICE	YES	18	80	0.4	0.13	0.0351	0.1052	UBE2V1->chr20:48697661-48732496:-,ubiquitin_conjugating_enzyme_E2_V1,PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.4	0.1403	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	3	8	IGH@	110185	chr14:106208229:-	IGL@	196555	chr22:23248647:+	INCL_NON_REF_SPLICE	YES	21064	11512	0	0	0.0351	0.0935	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1286	FALSE	0	14	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0585	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0585	FALSE	0	0	0	189	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2V1--PABPC1L	3	8	UBE2V1	1475	chr20:48732022:-	PABPC1L	25305	chr20:43560595:+	INCL_NON_REF_SPLICE	YES	18	57	0.38	0.16	0.0351	0.0935	UBE2V1->chr20:48697661-48732496:-,ubiquitin_conjugating_enzyme_E2_V1,PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.38	0.1286	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2V1--PABPC1L	3	8	UBE2V1	1475	chr20:48732022:-	PABPC1L	25693	chr20:43560983:+	ONLY_REF_SPLICE	YES	18	84	0.38	0.12	0.0351	0.0935	UBE2V1->chr20:48697661-48732496:-,ubiquitin_conjugating_enzyme_E2_V1,PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.38	0.1286	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTB-43E15.3--CTB-43E15.2	4	2	CTB-43E15.3	1192	chr5:173173023:-	CTB-43E15.2	10911	chr5:173128532:+	ONLY_REF_SPLICE	YES	141	0	0.04	1	0.0468	0.0234	LOCAL_INVERSION:-:+:[1765],CTB-43E15.3->chr5:173134617-173173214:-,CTB-43E15.2->chr5:173116462-173132852:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0702	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	4	2	IGH@	94749	chr14:106330029:-	IGL@	196586	chr22:23248678:+	INCL_NON_REF_SPLICE	YES	23841	7554	0	0	0.0468	0.0234	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0702	FALSE	1	11	2	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	4	2	IGH@	94348	chr14:106330430:-	IGL@	196586	chr22:23248678:+	INCL_NON_REF_SPLICE	YES	25918	7554	0	0	0.0468	0.0234	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0702	FALSE	0	5	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	4	2	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0.0234	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0702	TRUE	13	49	2	38	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	3	5	IGH@	117953	chr14:106111094:-	IGL@	196588	chr22:23248680:+	INCL_NON_REF_SPLICE	YES	9901	7284	0	0	0.0351	0.0585	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0936	FALSE	0	2	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTGES3--ESPL1	4	1	PTGES3	1378	chr12:57081782:-	ESPL1	12914	chr12:53662539:+	ONLY_REF_SPLICE	YES	1115	8	0	0.38	0.0468	0.0117	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,ESPL1->chr12:53662083-53687427:+,extra_spindle_pole_bodies_like_1,_separase	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.38	0.0585	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	2	8	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	14	0	0.42	1	0.0234	0.0935	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.1169	TRUE	0	0	0	21	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF2A--POTEA	4	0	EIF2A	2225	chr3:150270212:+	POTEA	28606	chr8:43197022:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0468	0	EIF2A->chr3:150264465-150302029:+,eukaryotic_translation_initiation_factor_2A,POTEA->POTE_ankyrin_domain_family_member_A,chr8:43147626-43218661:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-91G21.1--SERP1	3	3	RP11-91G21.1	1484	chr3:142719826:-	SERP1	12975	chr3:150262285:-	INCL_NON_REF_SPLICE	YES	0	912	1	0.01	0.0351	0.0351	RP11-91G21.1->chr3:142719749-142720309:-,SERP1->chr3:150259781-150321015:-,stress-associated_endoplasmic_reticulum_protein_1	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0702	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SYNRG--ACACA	3	3	SYNRG	23787	chr17:35900482:-	ACACA	56718	chr17:35641871:-	ONLY_REF_SPLICE	YES	32	32	0.16	0.16	0.0351	0.0351	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.16	0.0702	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2V1--PABPC1L	3	2	UBE2V1	1475	chr20:48732022:-	PABPC1L	27537	chr20:43564032:+	ONLY_REF_SPLICE	YES	18	97	0.22	0.05	0.0351	0.0234	UBE2V1->chr20:48697661-48732496:-,ubiquitin_conjugating_enzyme_E2_V1,PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.22	0.0585	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRI3BP--UBC	3	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0351	TRUE	5	99	5	34	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--IGL@	3	0	IGH@	119045	chr14:106110002:-	IGL@	196604	chr22:23248696:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx_FI:{Spleen=[count:13=pct:11.6],Colon=[count:6=pct:3.1],Salivary_Gland=[count:3=pct:7.7],Thyroid=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},IGH@->Oncogene{Bushman},IGL@->Oncogene{Bushman}	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0351	FALSE	0	25	1	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0351	FALSE	499	1288	110	792	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOR2--UBC	3	0	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0351	TRUE	52	148	13	33	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	3	0	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0351	FALSE	0	0	0	189	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	4	0	0.56	1	0.0234	0.0351	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.0585	FALSE	407	2205	196	549	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF2B1--RNF41	2	2	EIF2B1	5544	chr12:124110972:-	RNF41	19820	chr12:56602082:-	ONLY_REF_SPLICE	YES	234	137	0.02	0.03	0.0234	0.0234	EIF2B1->chr12:124104953-124118313:-,eukaryotic_translation_initiation_factor_2B_subunit_alpha,RNF41->chr12:56598285-56615717:-,ring_finger_protein_41	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0468	TRUE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--CHMP1A	2	2	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	47	107	0.08	0.04	0.0234	0.0234	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.08	0.0468	TRUE	1	20	1	28	3	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	2	1	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	8	3	0.27	0.5	0.0234	0.0117	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.5	0.0351	TRUE	0	1	0	21	1	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0117	0.0585	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0702	FALSE	192	492	57	212	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0117	0.0585	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0702	FALSE	467	2173	244	435	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0.0117	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0351	TRUE	62	24	1	171	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2V1--PABPC1L	1	5	UBE2V1	1475	chr20:48732022:-	PABPC1L	26423	chr20:43561713:+	ONLY_REF_SPLICE	NO	18	92	0.25	0.06	0.0117	0.0585	UBE2V1->chr20:48697661-48732496:-,ubiquitin_conjugating_enzyme_E2_V1,PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.25	0.0702	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2V1--PABPC1L	1	5	UBE2V1	1261	chr20:48732236:-	PABPC1L	26408	chr20:43561698:+	ONLY_REF_SPLICE	YES	32	90	0.16	0.06	0.0117	0.0585	UBE2V1->chr20:48697661-48732496:-,ubiquitin_conjugating_enzyme_E2_V1,PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.16	0.0702	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B2M--HNRNPUL1	2	0	B2M	1137	chr15:45003811:+	HNRNPUL1	13595	chr19:41774128:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,HNRNPUL1->chr19:41768401-41813503:+,heterogeneous_nuclear_ribonucleoprotein_U_like_1	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0234	TRUE	3	0	0	2	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BABAM1--ADAM28	2	0	BABAM1	1178	chr19:17378336:+	ADAM28	37920	chr8:24207377:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	BABAM1->BRISC_and_BRCA1_A_complex_member_1,chr19:17378159-17392058:+,ADAM28->ADAM_metallopeptidase_domain_28,chr8:24151553-24216531:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CYB5R3--SLBP	2	0	CYB5R3	1274	chr22:43045301:-	SLBP	20460	chr4:1701797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	CYB5R3->chr22:43013846-43045574:-,cytochrome_b5_reductase_3,SLBP->chr4:1694527-1714282:-,stem-loop_binding_protein	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--SURF4	2	0	DANCR	1530	chr4:53579126:+	SURF4	8570	chr9:136234321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SURF4->chr9:136228325-136242970:-,surfeit_4	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERN1--CHMP1A	2	0	ERN1	1844	chr17:62207336:-	CHMP1A	37604	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0234	TRUE	3	14	2	43	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0234	TRUE	145	312	16	51	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	2	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	30164	chr10:75439864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0234	TRUE	0	0	0	3	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC11--RSL1D1	2	0	TXNDC11	1402	chr16:11836333:-	RSL1D1	23734	chr16:11941663:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	LOCAL_REARRANGEMENT:-:[92322],TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11,RSL1D1->chr16:11929056-11945442:-,ribosomal_L1_domain_containing_1	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTB-43E15.3--CTB-43E15.2	1	3	CTB-43E15.3	3044	chr5:173145844:-	CTB-43E15.2	12069	chr5:173132593:+	ONLY_REF_SPLICE	YES	4	1	0.5	0.8	0.0117	0.0351	LOCAL_INVERSION:-:+:[1765],CTB-43E15.3->chr5:173134617-173173214:-,CTB-43E15.2->chr5:173116462-173132852:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.8	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF2B1--RNF41	1	2	EIF2B1	7078	chr12:124109334:-	RNF41	20369	chr12:56601533:-	ONLY_REF_SPLICE	YES	242	167	0.01	0.02	0.0117	0.0234	EIF2B1->chr12:124104953-124118313:-,eukaryotic_translation_initiation_factor_2B_subunit_alpha,RNF41->chr12:56598285-56615717:-,ring_finger_protein_41	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0351	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGB7--C4A	1	2	ITGB7	9504	chr12:53586924:-	C4A	17935	chr6:31959184:+	ONLY_REF_SPLICE	NO	6317	2494	0	0	0.0117	0.0234	ITGB7->chr12:53585102-53601091:-,integrin_subunit_beta_7,C4A->chr6:31949801-31970458:+,complement_component_4A_(Rodgers_blood_group)	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0351	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP26--NR3C1	1	1	ARHGAP26	30126	chr5:142526946:+	NR3C1	56438	chr5:142780417:-	ONLY_REF_SPLICE	NO	71	88	0.03	0.02	0.0117	0.0117	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=4;pct=0.05%;dist=Lung=2,Adipose_-_Subcutaneous=1,Whole_Blood=1},LOCAL_INVERSION:+:-:[48920],ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+,NR3C1->chr5:142657496-142815077:-,nuclear_receptor_subfamily_3_group_C_member_1	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0234	TRUE	1	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C12orf49--TESC	1	1	C12orf49	1281	chr12:117175595:-	TESC	13439	chr12:117513145:-	ONLY_REF_SPLICE	YES	67	140	0.03	0.01	0.0117	0.0117	C12orf49->chr12:117153593-117175875:-,chromosome_12_open_reading_frame_49,TESC->chr12:117476728-117537284:-,tescalcin	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0234	FALSE	0	1	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf56--SEL1L	1	1	C1orf56	2113	chr1:151021328:+	SEL1L	22233	chr14:81954286:-	ONLY_REF_SPLICE	YES	8	471	0.2	0	0.0117	0.0117	C1orf56->chr1:151020216-151024462:+,chromosome_1_open_reading_frame_56,SEL1L->Oncogene{Bushman},SEL1L_ERAD_E3_ligase_adaptor_subunit,chr14:81937893-82000205:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.2	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT1--SLC1A4	1	1	CNOT1	17824	chr16:58594116:-	SLC1A4	56282	chr2:65228582:+	ONLY_REF_SPLICE	YES	130	609	0.02	0	0.0117	0.0117	CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC1A4->chr2:65215611-65250999:+,solute_carrier_family_1_member_4	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM49B--U91328.19	1	1	FAM49B	15806	chr8:130874475:-	U91328.19	31470	chr6:25998131:+	ONLY_REF_SPLICE	NO	269	56	0.01	0.03	0.0117	0.0117	FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,U91328.19->chr6:25992890-26002003:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FMN1--TFDP2	1	1	FMN1	30151	chr15:33149216:-	TFDP2	62272	chr3:141697524:-	ONLY_REF_SPLICE	YES	50	117	0.04	0.02	0.0117	0.0117	FMN1->chr15:33057747-33486897:-,formin_1,TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0234	TRUE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMD12--PITPNC1	1	1	PSMD12	1216	chr17:65362528:-	PITPNC1	31550	chr17:65665624:+	ONLY_REF_SPLICE	YES	292	111	0.01	0.02	0.0117	0.0117	LOCAL_INVERSION:-:+:[10832],PSMD12->chr17:65334032-65362743:-,proteasome_26S_subunit,_non-ATPase_12,PITPNC1->chr17:65373575-65693372:+,phosphatidylinositol_transfer_protein,_cytoplasmic_1	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP1-34H18.1--RP11-781A6.1	1	1	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0117	0.0117	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0234	TRUE	94	160	11	37	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0117	0.0117	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0234	FALSE	16	356	14	466	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMARCC2--TIPIN	1	1	SMARCC2	2337	chr12:56580971:-	TIPIN	28441	chr15:66645293:-	ONLY_REF_SPLICE	YES	250	2	0.01	0.5	0.0117	0.0117	SMARCC2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_2,chr12:56556767-56583351:-,TIPIN->TIMELESS_interacting_protein,chr15:66628544-66679084:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.5	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000821
EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	hsa-mir-8072--DENND4A	1	1	hsa-mir-8072	2248	chr12:123849662:+	DENND4A	7531	chr15:66053776:-	ONLY_REF_SPLICE	YES	14	29	0.12	0.06	0.0117	0.0117	hsa-mir-8072->chr12:123848415-123850660:+,DENND4A->DENN_domain_containing_4A,chr15:65950384-66084631:-	EJM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.12	0.0234	TRUE	0	0	0	1	0	FALSE	ACH-000821
KMBC2_URINARY_TRACT	GTF3C2--GPN1	248	26	GTF3C2	3234	chr2:27573181:-	GPN1	20431	chr2:27852726:+	ONLY_REF_SPLICE	YES	2	15	0.99	0.95	3.4814	0.365	GTF3C2->chr2:27548716-27579868:-,general_transcription_factor_IIIC_subunit_2,GPN1->GPN-loop_GTPase_1,chr2:27851114-27874375:+	KMBC2_URINARY_TRACT	0.95	0.99	3.8464	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	ZNF292--FGD5-AS1	113	124	ZNF292	2606	chr6:87865477:+	FGD5-AS1	31587	chr3:14987661:-	ONLY_REF_SPLICE	YES	1	155	1	0.6	1.5863	1.7407	ZNF292->chr6:87862551-87973914:+,zinc_finger_protein_292,FGD5-AS1->FGD5_antisense_RNA_1,chr3:14961854-14989931:-	KMBC2_URINARY_TRACT	0.6	1	3.327	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	SLC25A3--KRT13	97	0	SLC25A3	3178	chr12:98989546:+	KRT13	12099	chr17:39661567:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3617	0	GTEx&tcga_normals:11/3694=0.30%,SLC25A3->chr12:98987369-98995946:+,solute_carrier_family_25_member_3,KRT13->chr17:39657233-39661957:-,keratin_13	KMBC2_URINARY_TRACT	1	1	1.3617	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	FKBP1A--BORA	53	28	FKBP1A	1329	chr20:1373478:-	BORA	12454	chr13:73303064:+	ONLY_REF_SPLICE	YES	300	0	0.21	1	0.744	0.3931	FKBP1A->FK506_binding_protein_1A,chr20:1349622-1373806:-,BORA->bora,_aurora_kinase_A_activator,chr13:73302061-73330336:+	KMBC2_URINARY_TRACT	0.21	1	1.1371	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	TIMM23B--LINC00843	55	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7721	0.1825	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMBC2_URINARY_TRACT	1	1	0.9546	TRUE	508	994	45	981	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	GPN1--GTF3C2	53	15	GPN1	1923	chr2:27852036:+	GTF3C2	21512	chr2:27566445:-	ONLY_REF_SPLICE	YES	12	3	0.85	0.96	0.744	0.2106	GPN1->GPN-loop_GTPase_1,chr2:27851114-27874375:+,GTF3C2->chr2:27548716-27579868:-,general_transcription_factor_IIIC_subunit_2	KMBC2_URINARY_TRACT	0.85	0.96	0.9546	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	GTF3C2--GPN1	44	9	GTF3C2	1263	chr2:27579606:-	GPN1	20431	chr2:27852726:+	ONLY_REF_SPLICE	YES	1	15	0.98	0.78	0.6177	0.1263	GTF3C2->chr2:27548716-27579868:-,general_transcription_factor_IIIC_subunit_2,GPN1->GPN-loop_GTPase_1,chr2:27851114-27874375:+	KMBC2_URINARY_TRACT	0.78	0.98	0.744	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	GTF3C2--GPN1	31	14	GTF3C2	1915	chr2:27578954:-	GPN1	20431	chr2:27852726:+	ONLY_REF_SPLICE	YES	2	15	0.96	0.75	0.4352	0.1965	GTF3C2->chr2:27548716-27579868:-,general_transcription_factor_IIIC_subunit_2,GPN1->GPN-loop_GTPase_1,chr2:27851114-27874375:+	KMBC2_URINARY_TRACT	0.75	0.96	0.6317	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	ZNF292--FGD5-AS1	29	22	ZNF292	2606	chr6:87865477:+	FGD5-AS1	35958	chr3:14965605:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.4071	0.3088	ZNF292->chr6:87862551-87973914:+,zinc_finger_protein_292,FGD5-AS1->FGD5_antisense_RNA_1,chr3:14961854-14989931:-	KMBC2_URINARY_TRACT	0.98	1	0.7159	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	NRIP1--AF127936.7	33	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	1	0.9	0.97	0.4633	0.0281	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMBC2_URINARY_TRACT	0.9	0.97	0.4914	FALSE	292	1546	117	613	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	ZNF654--HMGB2	32	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4492	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KMBC2_URINARY_TRACT	1	1	0.4492	TRUE	0	0	0	518	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-TA--MT-TC	27	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.379	0.0702	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMBC2_URINARY_TRACT	1	1	0.4492	FALSE	462	80	0	856	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	TIMM23--RP11-464F9.1	28	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	81	6	0.26	0.83	0.3931	0.014	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KMBC2_URINARY_TRACT	0.26	0.83	0.4071	TRUE	519	3926	326	965	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	RP11-123O10.4--GRIP1	26	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.365	0.014	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KMBC2_URINARY_TRACT	1	1	0.379	FALSE	416	2512	207	587	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-ND6--MT-TE	18	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2527	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMBC2_URINARY_TRACT	1	1	0.2527	FALSE	499	1288	110	792	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	OR51S1--TP53I11	15	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2106	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	KMBC2_URINARY_TRACT	1	1	0.2106	TRUE	402	216	10	229	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	ZNF292--POPDC3	12	9	ZNF292	2606	chr6:87865477:+	POPDC3	31579	chr6:105610035:-	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1685	0.1263	ZNF292->chr6:87862551-87973914:+,zinc_finger_protein_292,POPDC3->chr6:105606155-105627870:-,popeye_domain_containing_3	KMBC2_URINARY_TRACT	0.95	1	0.2948	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	EPB41L1--ATP5E	12	0	EPB41L1	21898	chr20:34782176:+	ATP5E	45620	chr20:57601117:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1685	0	EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,ATP5E->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_epsilon_subunit,chr20:57600522-57607437:-	KMBC2_URINARY_TRACT	1	1	0.1685	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	FKBP1A--BORA	10	6	FKBP1A	1329	chr20:1373478:-	BORA	15775	chr13:73312100:+	ONLY_REF_SPLICE	YES	300	39	0.05	0.29	0.1404	0.0842	FKBP1A->FK506_binding_protein_1A,chr20:1349622-1373806:-,BORA->bora,_aurora_kinase_A_activator,chr13:73302061-73330336:+	KMBC2_URINARY_TRACT	0.05	0.29	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	MT-ND6--MT-TE	11	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1544	0.0281	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMBC2_URINARY_TRACT	0.93	1	0.1825	FALSE	499	1288	110	792	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-ND6--MT-TE	10	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1404	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMBC2_URINARY_TRACT	1	1	0.1404	FALSE	499	1288	110	792	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-ND4--MT-ATP8	9	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7914	3	0	0.79	0.1263	0.0281	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMBC2_URINARY_TRACT	0	0.79	0.1544	FALSE	230	198	14	283	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	HSPBP1--GRK5	9	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1263	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KMBC2_URINARY_TRACT	1	1	0.1263	TRUE	1	39	0	134	39	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-CO3--MT-ATP6	4	19	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	1	26	0.96	0.47	0.0562	0.2667	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMBC2_URINARY_TRACT	0.47	0.96	0.3229	FALSE	189	492	56	216	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	FKBP1A--BORA	6	8	FKBP1A	1329	chr20:1373478:-	BORA	14729	chr13:73309098:+	ONLY_REF_SPLICE	YES	300	40	0.04	0.26	0.0842	0.1123	FKBP1A->FK506_binding_protein_1A,chr20:1349622-1373806:-,BORA->bora,_aurora_kinase_A_activator,chr13:73302061-73330336:+	KMBC2_URINARY_TRACT	0.04	0.26	0.1965	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	SDCBP2-AS1--SUPT20H	8	0	SDCBP2-AS1	8121	chr20:1355342:+	SUPT20H	29028	chr13:37603973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1123	0	SDCBP2-AS1->SDCBP2_antisense_RNA_1,chr20:1306049-1359378:+,SUPT20H->SPT20_homolog,_SAGA_complex_component,chr13:37583449-37633850:-	KMBC2_URINARY_TRACT	1	1	0.1123	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	MT-CO3--MT-ATP6	3	19	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.92	0.0421	0.2667	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMBC2_URINARY_TRACT	0.92	1	0.3088	FALSE	189	492	56	216	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-CO3--MT-ATP6	3	19	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	0	42	1	0.34	0.0421	0.2667	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMBC2_URINARY_TRACT	0.34	1	0.3088	FALSE	189	492	56	216	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-CO3--MT-ATP6	3	18	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.91	0.0421	0.2527	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMBC2_URINARY_TRACT	0.91	1	0.2948	FALSE	189	492	56	216	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-TA--MT-TC	6	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0.0702	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMBC2_URINARY_TRACT	1	1	0.1544	FALSE	462	80	0	856	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	LRP6--ATP8A2	5	4	LRP6	8939	chr12:12332744:-	ATP8A2	65735	chr13:26343184:+	ONLY_REF_SPLICE	YES	19	0	0.32	1	0.0702	0.0562	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,ATP8A2->ATPase_phospholipid_transporting_8A2,chr13:25946209-26599989:+	KMBC2_URINARY_TRACT	0.32	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	MT-CO3--MT-ATP6	6	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMBC2_URINARY_TRACT	1	1	0.0842	FALSE	189	492	56	216	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMBC2_URINARY_TRACT	1	1	0.0842	FALSE	462	80	0	856	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	LRP6--ATP8A2	5	3	LRP6	7767	chr12:12333977:-	ATP8A2	65735	chr13:26343184:+	ONLY_REF_SPLICE	YES	13	0	0.38	1	0.0702	0.0421	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,ATP8A2->ATPase_phospholipid_transporting_8A2,chr13:25946209-26599989:+	KMBC2_URINARY_TRACT	0.38	1	0.1123	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	MT-ND4--MT-ATP8	5	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9398	3	0	0.7	0.0702	0.0281	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMBC2_URINARY_TRACT	0	0.7	0.0983	FALSE	231	217	16	283	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	NRIP1--AF127936.7	4	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	60	1	0.1	0.88	0.0562	0.0421	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMBC2_URINARY_TRACT	0.1	0.88	0.0983	FALSE	125	705	46	456	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	GTF3C2--GPN1	1	14	GTF3C2	3234	chr2:27573181:-	GPN1	21525	chr2:27853894:+	ONLY_REF_SPLICE	NO	2	52	0.88	0.22	0.014	0.1965	GTF3C2->chr2:27548716-27579868:-,general_transcription_factor_IIIC_subunit_2,GPN1->GPN-loop_GTPase_1,chr2:27851114-27874375:+	KMBC2_URINARY_TRACT	0.22	0.88	0.2105	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	MT-ND4--MT-ATP8	4	2	MT-ND4	1546	chrM:11305:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	12036	369	0	0.02	0.0562	0.0281	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMBC2_URINARY_TRACT	0	0.02	0.0843	FALSE	231	217	16	283	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-ND4--MT-ATP8	4	2	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	9320	688	0	0.01	0.0562	0.0281	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMBC2_URINARY_TRACT	0	0.01	0.0843	FALSE	231	217	16	283	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-ND4--MT-ATP8	4	2	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1546	13	0	0.32	0.0562	0.0281	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMBC2_URINARY_TRACT	0	0.32	0.0843	FALSE	216	209	16	281	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-TA--MT-TC	3	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0.0842	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMBC2_URINARY_TRACT	1	1	0.1263	FALSE	462	80	0	856	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	CTD-3116E22.6--ZNF274	4	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	KMBC2_URINARY_TRACT	1	1	0.0562	TRUE	0	0	0	13	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMBC2_URINARY_TRACT	1	1	0.0562	FALSE	183	104	9	328	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KMBC2_URINARY_TRACT	1	1	0.0562	TRUE	0	0	0	434	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-ND4--MT-ATP8	3	3	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	9352	0	0	1	0.0421	0.0421	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMBC2_URINARY_TRACT	0	1	0.0842	FALSE	231	217	16	283	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-ND6--MT-TE	3	3	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0421	0.0421	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMBC2_URINARY_TRACT	0.86	1	0.0842	FALSE	499	1288	110	792	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-ND6--MT-TE	3	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0421	0.0421	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMBC2_URINARY_TRACT	0.86	1	0.0842	FALSE	499	1288	110	792	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	10813	0	0	1	0.0421	0.0281	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMBC2_URINARY_TRACT	0	1	0.0702	FALSE	231	217	16	283	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	NO	8111	0	0	1	0.0421	0.0281	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMBC2_URINARY_TRACT	0	1	0.0702	FALSE	231	204	14	283	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	10524	1	0	0.83	0.0421	0.0281	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMBC2_URINARY_TRACT	0	0.83	0.0702	FALSE	231	205	14	283	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	11155	0	0	1	0.0421	0.0281	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMBC2_URINARY_TRACT	0	1	0.0702	FALSE	231	217	16	283	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	7962	3	0	0.62	0.0421	0.0281	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMBC2_URINARY_TRACT	0	0.62	0.0702	FALSE	230	193	14	283	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	RP11-120D5.1--MID1	3	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	21	1	0.19	0.0421	0.0281	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KMBC2_URINARY_TRACT	0.19	1	0.0702	FALSE	16	356	14	466	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	FKBP1A--BORA	1	9	FKBP1A	1329	chr20:1373478:-	BORA	13622	chr13:73305419:+	ONLY_REF_SPLICE	YES	300	29	0.03	0.26	0.014	0.1263	FKBP1A->FK506_binding_protein_1A,chr20:1349622-1373806:-,BORA->bora,_aurora_kinase_A_activator,chr13:73302061-73330336:+	KMBC2_URINARY_TRACT	0.03	0.26	0.1403	TRUE	0	0	0	1	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	RP11-123O10.4--GRIP1	3	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0421	0.014	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KMBC2_URINARY_TRACT	1	1	0.0561	FALSE	93	270	15	244	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	FKBP1A--BORA	2	4	FKBP1A	1329	chr20:1373478:-	BORA	16857	chr13:73317675:+	ONLY_REF_SPLICE	YES	300	34	0.02	0.15	0.0281	0.0562	FKBP1A->FK506_binding_protein_1A,chr20:1349622-1373806:-,BORA->bora,_aurora_kinase_A_activator,chr13:73302061-73330336:+	KMBC2_URINARY_TRACT	0.02	0.15	0.0843	TRUE	0	0	0	1	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-ATP6--MT-CO1	3	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMBC2_URINARY_TRACT	1	1	0.0421	FALSE	183	104	9	328	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMBC2_URINARY_TRACT	1	1	0.0421	FALSE	189	492	56	216	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMBC2_URINARY_TRACT	1	1	0.0421	FALSE	499	1288	110	792	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	GTF3C2--GPN1	1	4	GTF3C2	1263	chr2:27579606:-	GPN1	23131	chr2:27855500:+	ONLY_REF_SPLICE	YES	1	74	0.83	0.06	0.014	0.0562	GTF3C2->chr2:27548716-27579868:-,general_transcription_factor_IIIC_subunit_2,GPN1->GPN-loop_GTPase_1,chr2:27851114-27874375:+	KMBC2_URINARY_TRACT	0.06	0.83	0.0702	TRUE	0	0	0	1	0	TRUE	ACH-000862
KMBC2_URINARY_TRACT	NCOR2--UBC	2	0	NCOR2	2329	chr12:125020111:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	KMBC2_URINARY_TRACT	1	1	0.0281	TRUE	48	117	12	14	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	NRIP1--AF127936.7	1	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	73	1	0.06	0.83	0.014	0.0562	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMBC2_URINARY_TRACT	0.06	0.83	0.0702	FALSE	164	806	69	479	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMBC2_URINARY_TRACT	1	1	0.0281	FALSE	7	44	2	41	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	WWOX--RP11-319G9.5	2	0	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	KMBC2_URINARY_TRACT	1	1	0.0281	FALSE	33	33	2	19	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	C14orf37--PSMA3	1	1	C14orf37	1185	chr14:58764673:-	PSMA3	28539	chr14:58730423:+	ONLY_REF_SPLICE	YES	1	444	0.67	0	0.014	0.014	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	KMBC2_URINARY_TRACT	0	0.67	0.028	FALSE	0	0	0	2	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	CDC42SE2--CTD-2410N18.5	1	1	CDC42SE2	5200	chr5:130599859:+	CTD-2410N18.5	21445	chr5:133509713:-	ONLY_REF_SPLICE	YES	15	1	0.12	0.67	0.014	0.014	CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,CTD-2410N18.5->chr5:133502861-133561762:-	KMBC2_URINARY_TRACT	0.12	0.67	0.028	TRUE	0	1	0	3	1	TRUE	ACH-000862
KMBC2_URINARY_TRACT	GPC1--NOC4L	1	1	GPC1	1414	chr2:241375501:+	NOC4L	23300	chr12:132635526:+	ONLY_REF_SPLICE	YES	116	27	0.02	0.07	0.014	0.014	GPC1->chr2:241375088-241407493:+,glypican_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	KMBC2_URINARY_TRACT	0.02	0.07	0.028	TRUE	0	0	0	1	0	FALSE	ACH-000862
KMBC2_URINARY_TRACT	PROSC--CHMP1A	1	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	50	292	0.04	0.01	0.014	0.014	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	KMBC2_URINARY_TRACT	0.01	0.04	0.028	FALSE	13	55	3	29	0	FALSE	ACH-000862
PK1_PANCREAS	SREBF1--TOM1L2	182	127	SREBF1	1285	chr17:17740041:-	TOM1L2	33791	chr17:17754266:-	ONLY_REF_SPLICE	YES	193	90	0.62	0.77	2.2152	1.5458	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[6503],SREBF1->chr17:17713713-17740325:-,sterol_regulatory_element_binding_transcription_factor_1,TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein	PK1_PANCREAS	0.62	0.77	3.761	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	HSPBP1--ZSWIM6	137	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6675	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	PK1_PANCREAS	1	1	1.6675	TRUE	47	32	1	28	0	FALSE	ACH-000307
PK1_PANCREAS	TIMM23B--LINC00843	101	47	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.2293	0.5721	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PK1_PANCREAS	0.99	1	1.8014	TRUE	508	994	45	981	0	FALSE	ACH-000307
PK1_PANCREAS	TIMM23--RP11-464F9.1	60	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	515	7	0.11	0.9	0.7303	0.073	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PK1_PANCREAS	0.11	0.9	0.8033	TRUE	519	3926	326	965	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ND4L	13	120	MT-ND4	1852	chrM:11611:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	13515	0	0.01	1	0.1582	1.4606	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK1_PANCREAS	0.01	1	1.6188	FALSE	344	827	44	306	0	FALSE	ACH-000307
PK1_PANCREAS	RP11-680G10.1--GSE1	28	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	51	1	0.41	0.3408	0.0974	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PK1_PANCREAS	0.41	1	0.4382	TRUE	465	1949	224	605	0	FALSE	ACH-000307
PK1_PANCREAS	SREBF1--TOM1L2	6	95	SREBF1	1285	chr17:17740041:-	TOM1L2	34941	chr17:17752173:-	ONLY_REF_SPLICE	YES	193	80	0.34	0.56	0.073	1.1563	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[6503],SREBF1->chr17:17713713-17740325:-,sterol_regulatory_element_binding_transcription_factor_1,TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein	PK1_PANCREAS	0.34	0.56	1.2293	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ND4L	3	100	MT-ND4	1144	chrM:10903:+	MT-ND4L	5557	chrM:10648:+	INCL_NON_REF_SPLICE	YES	32	0	0.76	1	0.0365	1.2172	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK1_PANCREAS	0.76	1	1.2537	FALSE	344	826	44	306	0	FALSE	ACH-000307
PK1_PANCREAS	MT-TA--MT-TC	25	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3043	0.0243	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PK1_PANCREAS	1	1	0.3286	FALSE	462	80	0	856	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ND4L	5	81	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	13	0	0.87	1	0.0609	0.9859	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK1_PANCREAS	0.87	1	1.0468	FALSE	344	826	44	306	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ND4L	8	60	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	10	0	0.87	1	0.0974	0.7303	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK1_PANCREAS	0.87	1	0.8277	FALSE	344	821	44	306	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND5--MT-ATP8	17	21	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	10	0	0.79	1	0.2069	0.2556	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0.79	1	0.4625	FALSE	43	37	8	105	0	FALSE	ACH-000307
PK1_PANCREAS	SREBF1--TOM1L2	8	56	SREBF1	1285	chr17:17740041:-	TOM1L2	35978	chr17:17751097:-	ONLY_REF_SPLICE	YES	193	90	0.25	0.42	0.0974	0.6816	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[6503],SREBF1->chr17:17713713-17740325:-,sterol_regulatory_element_binding_transcription_factor_1,TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein	PK1_PANCREAS	0.25	0.42	0.779	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	21	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2556	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	1	1	0.2556	FALSE	230	193	14	283	0	FALSE	ACH-000307
PK1_PANCREAS	NPM1P24--SET	17	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	60	2299	0.23	0.01	0.2069	0.0122	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PK1_PANCREAS	0.01	0.23	0.2191	TRUE	0	0	0	434	0	FALSE	ACH-000307
PK1_PANCREAS	RP11-114H23.1--RP11-114H23.2	9	30	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	3	0	0.93	1	0.1095	0.3651	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	PK1_PANCREAS	0.93	1	0.4746	FALSE	81	155	12	160	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND5--MT-ATP8	13	9	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4433	13	0	0.63	0.1582	0.1095	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	0.63	0.2677	FALSE	43	37	8	105	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ND4L	6	35	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	1637	0	0.02	1	0.073	0.426	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK1_PANCREAS	0.02	1	0.499	FALSE	344	827	44	306	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ND4L	9	22	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8529	0	0	1	0.1095	0.2678	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK1_PANCREAS	0	1	0.3773	FALSE	344	827	44	306	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ND4L	5	36	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	13104	0	0	1	0.0609	0.4382	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK1_PANCREAS	0	1	0.4991	FALSE	328	800	43	304	0	FALSE	ACH-000307
PK1_PANCREAS	C15orf57--CBX3	10	15	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	148	64	0.14	0.28	0.1217	0.1826	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PK1_PANCREAS	0.14	0.28	0.3043	TRUE	267	562	48	632	0	FALSE	ACH-000307
PK1_PANCREAS	C15orf57--CBX3	8	22	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	150	64	0.17	0.32	0.0974	0.2678	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PK1_PANCREAS	0.17	0.32	0.3652	TRUE	267	562	48	632	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND5--MT-ATP8	8	22	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0974	0.2678	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	1	1	0.3652	FALSE	43	37	8	105	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ND4L	8	20	MT-ND4	1248	chrM:11007:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	105	0	0.21	1	0.0974	0.2434	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK1_PANCREAS	0.21	1	0.3408	FALSE	344	827	44	306	0	FALSE	ACH-000307
PK1_PANCREAS	RP11-353N4.6--RP11-403I13.8	10	10	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	75	1	0.21	0.95	0.1217	0.1217	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	PK1_PANCREAS	0.21	0.95	0.2434	TRUE	6	2	0	8	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ND4L	5	29	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	49	0	0.41	1	0.0609	0.353	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK1_PANCREAS	0.41	1	0.4139	FALSE	344	826	44	306	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ND4L	6	22	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1877	0	0.01	1	0.073	0.2678	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK1_PANCREAS	0.01	1	0.3408	FALSE	344	827	44	306	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	6	21	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	15563	0	0	1	0.073	0.2556	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	1	0.3286	FALSE	231	215	16	283	0	FALSE	ACH-000307
PK1_PANCREAS	NRIP1--AF127936.7	11	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.1339	0.0122	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PK1_PANCREAS	0.86	1	0.1461	FALSE	292	1546	117	613	0	FALSE	ACH-000307
PK1_PANCREAS	C2CD2--DSCAM	10	4	C2CD2	15385	chr21:43321731:-	DSCAM	29584	chr21:41741172:-	ONLY_REF_SPLICE	YES	7	0	0.67	1	0.1217	0.0487	C2CD2->C2_calcium-dependent_domain_containing_2,chr21:43305221-43373999:-,DSCAM->Down_syndrome_cell_adhesion_molecule,chr21:41382926-42219065:-	PK1_PANCREAS	0.67	1	0.1704	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	7	11	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16202	88	0	0.17	0.0852	0.1339	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	0.17	0.2191	FALSE	231	217	16	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ND4L	4	23	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	14673	0	0	1	0.0487	0.2799	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK1_PANCREAS	0	1	0.3286	FALSE	343	822	44	305	0	FALSE	ACH-000307
PK1_PANCREAS	KRT5--MT-CO3	8	6	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	4686	19854	0	0	0.0974	0.073	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PK1_PANCREAS	0	0	0.1704	FALSE	0	0	0	18	0	FALSE	ACH-000307
PK1_PANCREAS	MT-TA--MT-TC	9	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1095	0.0243	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PK1_PANCREAS	1	1	0.1338	FALSE	462	80	0	856	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0974	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	1	1	0.0974	FALSE	230	198	14	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ND4L	3	20	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	147	0	0.14	1	0.0365	0.2434	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK1_PANCREAS	0.14	1	0.2799	FALSE	344	827	44	306	0	FALSE	ACH-000307
PK1_PANCREAS	WWP2--NFAT5	8	0	WWP2	1086	chr16:69796294:+	NFAT5	54483	chr16:69724843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0974	0	LOCAL_REARRANGEMENT:+:[57640],WWP2->WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr16:69796209-69975644:+,NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive	PK1_PANCREAS	1	1	0.0974	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	MT-ND5--MT-ATP8	4	15	MT-ND5	2321	chrM:13657:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	3639	0	0.01	1	0.0487	0.1826	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0.01	1	0.2313	FALSE	43	37	8	105	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	7	2	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	18843	1627	0	0.01	0.0852	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	0.01	0.1095	FALSE	231	205	14	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	4	14	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2561	88	0.01	0.17	0.0487	0.1704	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0.01	0.17	0.2191	FALSE	216	209	16	281	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND3--MT-ATP8	7	0	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0852	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	1	1	0.0852	FALSE	351	233	23	137	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	3	16	MT-ND4	1959	chrM:11718:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	17800	0	0	1	0.0365	0.1947	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	1	0.2312	FALSE	231	217	16	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	4	11	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	16202	233	0	0.06	0.0487	0.1339	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	0.06	0.1826	FALSE	231	217	16	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND5--MT-ATP8	5	7	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6585	88	0	0.12	0.0609	0.0852	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	0.12	0.1461	FALSE	43	37	8	105	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	6	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20472	0	0	1	0.073	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	1	0.0973	FALSE	231	217	16	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	3	14	MT-ND4	2098	chrM:11857:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12442	88	0	0.16	0.0365	0.1704	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	0.16	0.2069	FALSE	231	215	16	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	3	14	MT-ND4	1774	chrM:11533:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	19142	0	0	1	0.0365	0.1704	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	1	0.2069	FALSE	231	217	16	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND5--MT-ATP8	6	2	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	7122	6	0	0.57	0.073	0.0243	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	0.57	0.0973	FALSE	41	30	6	102	0	FALSE	ACH-000307
PK1_PANCREAS	RP11-680G10.1--GSE1	4	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	27	1	0.33	0.0487	0.1095	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PK1_PANCREAS	0.33	1	0.1582	TRUE	458	1351	185	561	0	FALSE	ACH-000307
PK1_PANCREAS	RPSAP52--HMGA2	6	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	468	1	0.01	0.073	0.0122	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	PK1_PANCREAS	0.01	1	0.0852	FALSE	0	59	0	125	0	FALSE	ACH-000307
PK1_PANCREAS	RP11-353N4.6--RP11-403I13.8	4	8	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	73	1	0.14	0.92	0.0487	0.0974	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	PK1_PANCREAS	0.14	0.92	0.1461	TRUE	6	2	0	8	0	FALSE	ACH-000307
PK1_PANCREAS	RP11-353N4.6--RP11-403I13.8	4	8	RP11-353N4.6	2221	chr1:149576702:+	RP11-403I13.8	17239	chr1:149291199:+	INCL_NON_REF_SPLICE	YES	73	1	0.14	0.92	0.0487	0.0974	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	PK1_PANCREAS	0.14	0.92	0.1461	TRUE	6	2	0	8	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	5	2	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	20223	0	0	1	0.0609	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	1	0.0852	FALSE	231	217	16	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	5	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15476	13	0	0.35	0.0609	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	0.35	0.0852	FALSE	231	205	14	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND5--MT-ATP8	3	10	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	4693	0	0	1	0.0365	0.1217	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	1	0.1582	FALSE	43	37	8	105	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	5	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	13432	0	0	1	0.0609	0.0122	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	1	0.0731	FALSE	231	204	14	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	5	0	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	1	1	0.0609	FALSE	230	197	14	283	0	FALSE	ACH-000307
PK1_PANCREAS	RP11-123O10.4--GRIP1	5	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0609	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PK1_PANCREAS	1	1	0.0609	FALSE	416	2512	207	587	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	3	7	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	19026	1627	0	0.01	0.0365	0.0852	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	0.01	0.1217	FALSE	231	217	16	283	0	FALSE	ACH-000307
PK1_PANCREAS	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0365	0.073	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PK1_PANCREAS	0.82	1	0.1095	FALSE	407	2205	196	549	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	3	5	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	22813	804	0	0.01	0.0365	0.0609	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	0.01	0.0974	FALSE	231	217	16	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	4	1	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	13437	0	0	1	0.0487	0.0122	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	1	0.0609	FALSE	231	204	14	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	4	1	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	15180	1941	0	0	0.0487	0.0122	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	0	0.0609	FALSE	231	205	14	283	0	FALSE	ACH-000307
PK1_PANCREAS	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	NO	60	2105	0.08	0	0.0487	0.0122	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PK1_PANCREAS	0	0.08	0.0609	FALSE	0	0	0	434	0	FALSE	ACH-000307
PK1_PANCREAS	ITGA3--TUBB	4	0	ITGA3	12301	chr17:48153818:+	TUBB	28691	chr6:30691270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	ITGA3->chr17:48133332-48167845:+,integrin_subunit_alpha_3,TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I	PK1_PANCREAS	1	1	0.0487	TRUE	0	0	0	5	0	TRUE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	3	4	MT-ND4	1503	chrM:11262:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	20845	0	0	1	0.0365	0.0487	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	1	0.0852	FALSE	231	217	16	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	3	4	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	21176	0	0	1	0.0365	0.0487	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	1	0.0852	FALSE	231	217	16	283	0	FALSE	ACH-000307
PK1_PANCREAS	MTND4P12--MTATP6P1	4	0	MTND4P12	1259	chr5:134263468:-	MTATP6P1	5678	chr1:569376:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	PK1_PANCREAS	1	1	0.0487	TRUE	27	31	5	8	0	FALSE	ACH-000307
PK1_PANCREAS	NRIP1--AF127936.7	3	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	35	0	0.17	1	0.0365	0.0487	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PK1_PANCREAS	0.17	1	0.0852	FALSE	164	806	69	479	0	FALSE	ACH-000307
PK1_PANCREAS	RNF13--RP11-167H9.4	4	0	RNF13	8097	chr3:149589941:+	RP11-167H9.4	22223	chr3:149842725:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0487	0	NEIGHBORS[77075],RNF13->chr3:149530495-149679926:+,ring_finger_protein_13,RP11-167H9.4->chr3:149757001-149931513:+	PK1_PANCREAS	1	1	0.0487	FALSE	0	0	0	1	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	3	3	MT-ND4	1521	chrM:11280:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	22520	608	0	0.01	0.0365	0.0365	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	0.01	0.073	FALSE	231	217	16	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0.0365	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PK1_PANCREAS	1	1	0.073	FALSE	462	80	0	856	0	FALSE	ACH-000307
PK1_PANCREAS	JUP--MT-CO3	3	2	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	1190	20415	0	0	0.0365	0.0243	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PK1_PANCREAS	0	0	0.0608	FALSE	0	0	0	33	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1473	chrM:11232:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	20429	0	0	1	0.0365	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	1	0.0608	FALSE	231	217	16	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	20962	8	0	0.38	0.0365	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	0.38	0.0608	FALSE	231	217	16	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	20943	0	0	1	0.0365	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	1	0.0608	FALSE	231	217	16	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1311	chrM:11070:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	18825	0	0	1	0.0365	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	1	0.0608	FALSE	231	205	14	283	0	FALSE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	20472	0	0	1	0.0365	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	0	1	0.0608	FALSE	231	217	16	283	0	FALSE	ACH-000307
PK1_PANCREAS	RP11-353N4.6--RP11-403I13.8	1	10	RP11-353N4.6	7562	chr1:149591237:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	72	1	0.13	0.92	0.0122	0.1217	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	PK1_PANCREAS	0.13	0.92	0.1339	TRUE	0	0	0	3	0	FALSE	ACH-000307
PK1_PANCREAS	YWHAZ--ZNF706	3	2	YWHAZ	2460	chr8:101964157:-	ZNF706	24352	chr8:102213971:-	ONLY_REF_SPLICE	YES	1193	904	0	0.01	0.0365	0.0243	GTEx_FI:{Skin=[count:2=pct:0.6],Blood=[count:2=pct:1.1],Esophagus=[count:1=pct:0.2],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta,ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706	PK1_PANCREAS	0	0.01	0.0608	FALSE	5	5	0	7	0	FALSE	ACH-000307
PK1_PANCREAS	MCL1--KRT18	3	1	MCL1	1627	chr1:150551440:-	KRT18	9286	chr12:53342905:+	INCL_NON_REF_SPLICE	YES	460	4	0.01	0.5	0.0365	0.0122	MCL1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:150547032-150552066:-,myeloid_cell_leukemia_1,KRT18->chr12:53342655-53346685:+,keratin_18	PK1_PANCREAS	0.01	0.5	0.0487	FALSE	0	0	0	1	0	FALSE	ACH-000307
PK1_PANCREAS	MTND4P12--MTATP6P1	3	1	MTND4P12	1975	chr5:134262752:-	MTATP6P1	5799	chr1:569497:+	INCL_NON_REF_SPLICE	YES	3	2835	0.57	0	0.0365	0.0122	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	PK1_PANCREAS	0	0.57	0.0487	FALSE	27	31	5	8	0	FALSE	ACH-000307
PK1_PANCREAS	RP11-1023L17.1--CDH12	3	1	RP11-1023L17.1	4445	chr5:34218400:-	CDH12	31145	chr5:21975494:-	ONLY_REF_SPLICE	NO	7	0	0.36	1	0.0365	0.0122	RP11-1023L17.1->chr5:34164803-34244901:-,CDH12->cadherin_12,chr5:21750782-22853731:-	PK1_PANCREAS	0.36	1	0.0487	TRUE	0	1	0	1	1	TRUE	ACH-000307
PK1_PANCREAS	SYNGR2--RPL3	3	1	SYNGR2	4217	chr17:76167855:+	RPL3	10915	chr22:39714450:-	INCL_NON_REF_SPLICE	YES	847	3554	0	0	0.0365	0.0122	SYNGR2->chr17:76164639-76169608:+,synaptogyrin_2,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3	PK1_PANCREAS	0	0	0.0487	FALSE	0	0	0	1	0	FALSE	ACH-000307
PK1_PANCREAS	USP10--COTL1	3	1	USP10	1134	chr16:84733717:+	COTL1	26655	chr16:84623868:-	ONLY_REF_SPLICE	YES	79	959	0.05	0	0.0365	0.0122	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	PK1_PANCREAS	0	0.05	0.0487	FALSE	0	0	0	5	0	FALSE	ACH-000307
PK1_PANCREAS	EIF1--RPL5	3	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	PK1_PANCREAS	1	1	0.0365	TRUE	0	0	0	39	0	FALSE	ACH-000307
PK1_PANCREAS	ERCC1--EHD2	3	0	ERCC1	16708	chr19:45911096:-	EHD2	30510	chr19:48245765:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1,EHD2->EH_domain_containing_2,chr19:48216600-48246391:+	PK1_PANCREAS	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	MT-ND4--MT-ATP8	3	0	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK1_PANCREAS	1	1	0.0365	FALSE	230	193	14	283	0	FALSE	ACH-000307
PK1_PANCREAS	YWHAE--CRK	2	3	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	3678	207	0	0.02	0.0243	0.0365	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	PK1_PANCREAS	0	0.02	0.0608	FALSE	6	50	7	115	0	FALSE	ACH-000307
PK1_PANCREAS	AC002066.1--AC073130.1	2	2	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	23	0	0.15	1	0.0243	0.0243	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	PK1_PANCREAS	0.15	1	0.0486	FALSE	0	1	1	30	0	FALSE	ACH-000307
PK1_PANCREAS	AC002066.1--AC073130.1	2	2	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	13	0	0.24	1	0.0243	0.0243	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	PK1_PANCREAS	0.24	1	0.0486	FALSE	0	3	0	33	0	FALSE	ACH-000307
PK1_PANCREAS	MYO15B--UBALD2	2	2	MYO15B	5783	chr17:73588921:+	UBALD2	37085	chr17:74266275:+	ONLY_REF_SPLICE	YES	0	30	1	0.12	0.0243	0.0243	MYO15B->chr17:73584139-73622929:+,myosin_XVB,UBALD2->UBA_like_domain_containing_2,chr17:74261283-74267375:+	PK1_PANCREAS	0.12	1	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	NCOR2--UBC	2	1	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	2	82	0.6	0.04	0.0243	0.0122	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	PK1_PANCREAS	0.04	0.6	0.0365	TRUE	145	312	16	51	0	FALSE	ACH-000307
PK1_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0122	0.0609	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PK1_PANCREAS	0.86	1	0.0731	FALSE	467	2173	244	435	0	FALSE	ACH-000307
PK1_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.75	0.86	0.0122	0.0609	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PK1_PANCREAS	0.75	0.86	0.0731	FALSE	515	4851	409	746	0	FALSE	ACH-000307
PK1_PANCREAS	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0243	0.0122	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PK1_PANCREAS	0.75	1	0.0365	TRUE	62	24	1	171	0	FALSE	ACH-000307
PK1_PANCREAS	USP10--COTL1	2	1	USP10	1134	chr16:84733717:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	79	927	0.04	0	0.0243	0.0122	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	PK1_PANCREAS	0	0.04	0.0365	FALSE	0	0	0	7	0	FALSE	ACH-000307
PK1_PANCREAS	ALCAM--TFG	2	0	ALCAM	1573	chr3:105086325:+	TFG	34330	chr3:100451352:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	ALCAM->activated_leukocyte_cell_adhesion_molecule,chr3:105085753-105295744:+,TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	CALM2--TTC7A	2	0	CALM2	1161	chr2:47403580:-	TTC7A	28805	chr2:47233061:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx_v2:{count=2;pct=0.02%;dist=Heart_-_Atrial_Appendage=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[83945],CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,TTC7A->chr2:47143296-47303276:+,tetratricopeptide_repeat_domain_7A	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	2	0	TRUE	ACH-000307
PK1_PANCREAS	ERCC1--EHD2	2	0	ERCC1	10963	chr19:45920079:-	EHD2	22869	chr19:48221766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1,EHD2->EH_domain_containing_2,chr19:48216600-48246391:+	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	FAM49B--GNAS	2	0	FAM49B	1760	chr8:131028616:-	GNAS	46049	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx&tcga_normals:1/3694=0.03%,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	HDLBP--THAP4	2	0	HDLBP	2464	chr2:242254985:-	THAP4	44071	chr2:242545888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein,THAP4->THAP_domain_containing_4,chr2:242523820-242576864:-	PK1_PANCREAS	1	1	0.0243	TRUE	0	2	0	4	1	TRUE	ACH-000307
PK1_PANCREAS	ITGB1--NRP1	2	0	ITGB1	7027	chr10:33247073:-	NRP1	43211	chr10:33515217:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	HGNC_GENEFAM,ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1,NRP1->chr10:33466420-33625190:-,neuropilin_1	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	JMJD1C--OBFC1	2	0	JMJD1C	1468	chr10:65225255:-	OBFC1	42592	chr10:105652010:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C,OBFC1->chr10:105642300-105677963:-,oligonucleotide/oligosaccharide_binding_fold_containing_1	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	LMAN2L--RMI2	2	0	LMAN2L	5311	chr2:97399256:-	RMI2	20200	chr16:11444499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	LMAN2L->chr2:97371666-97405801:-,lectin,_mannose_binding_2_like,RMI2->Oncogene{Bushman},RecQ_mediated_genome_instability_2,chr16:11343476-11445619:+	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	MBTPS1--WARS	2	0	MBTPS1	1172	chr16:84150340:-	WARS	44758	chr14:100828258:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	MBTPS1->chr16:84087368-84150511:-,membrane_bound_transcription_factor_peptidase,_site_1,WARS->chr14:100800125-100843142:-,tryptophanyl-tRNA_synthetase	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	PPP4R1--VAPA	2	0	PPP4R1	2015	chr18:9614224:-	VAPA	33688	chr18:9931807:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	PK1_PANCREAS	1	1	0.0243	TRUE	0	1	0	3	0	TRUE	ACH-000307
PK1_PANCREAS	TNRC18--RNF216	2	0	TNRC18	13009	chr7:5415665:-	RNF216	49243	chr7:5792610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,RNF216->Oncogene{Bushman},chr7:5659678-5821370:-,ring_finger_protein_216	PK1_PANCREAS	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	ADORA2B--UBB	1	3	ADORA2B	1667	chr17:15848897:+	UBB	8656	chr17:16285216:+	ONLY_REF_SPLICE	YES	654	115	0.01	0.03	0.0122	0.0365	ADORA2B->adenosine_A2b_receptor,chr17:15848231-15879060:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	PK1_PANCREAS	0.01	0.03	0.0487	FALSE	0	1	0	5	1	FALSE	ACH-000307
PK1_PANCREAS	NRIP1--AF127936.7	1	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.17	1	0.0122	0.0365	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PK1_PANCREAS	0.17	1	0.0487	FALSE	125	705	46	456	0	FALSE	ACH-000307
PK1_PANCREAS	YWHAE--CRK	1	3	YWHAE	6807	chr17:1264386:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	2481	207	0	0.02	0.0122	0.0365	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	PK1_PANCREAS	0	0.02	0.0487	FALSE	0	1	0	2	0	FALSE	ACH-000307
PK1_PANCREAS	AC004980.7--YWHAG	1	1	AC004980.7	2605	chr7:76180839:+	YWHAG	12421	chr7:75959550:-	ONLY_REF_SPLICE	YES	29	860	0.06	0	0.0122	0.0122	AC004980.7->chr7:76178677-76257299:+,YWHAG->chr7:75956116-75988348:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_gamma	PK1_PANCREAS	0	0.06	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000307
PK1_PANCREAS	AGRN--SERINC2	1	1	AGRN	4732	chr1:970704:+	SERINC2	35369	chr1:31905814:+	ONLY_REF_SPLICE	YES	364	1228	0.01	0	0.0122	0.0122	AGRN->agrin,chr1:955503-991496:+,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	PK1_PANCREAS	0	0.01	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000307
PK1_PANCREAS	ARHGAP12--KIF5B	1	1	ARHGAP12	8538	chr10:32132389:-	KIF5B	28066	chr10:32337479:-	ONLY_REF_SPLICE	YES	166	285	0.01	0.01	0.0122	0.0122	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[80196],ARHGAP12->Rho_GTPase_activating_protein_12,chr10:32094365-32217742:-,KIF5B->chr10:32297938-32345359:-,kinesin_family_member_5B	PK1_PANCREAS	0.01	0.01	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000307
PK1_PANCREAS	ATRX--MAGT1	1	1	ATRX	1235	chrX:77041468:-	MAGT1	48542	chrX:77131094:-	ONLY_REF_SPLICE	YES	111	361	0.02	0.01	0.0122	0.0122	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[40159],ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,MAGT1->chrX:77081861-77151090:-,magnesium_transporter_1	PK1_PANCREAS	0.01	0.02	0.0244	FALSE	0	0	0	2	0	FALSE	ACH-000307
PK1_PANCREAS	CCND2--CREBL2	1	1	CCND2	6283	chr12:4398156:+	CREBL2	19622	chr12:12788711:+	ONLY_REF_SPLICE	YES	271	69	0.01	0.03	0.0122	0.0122	CCND2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:4382938-4414516:+,cyclin_D2,CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+	PK1_PANCREAS	0.01	0.03	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000307
PK1_PANCREAS	CD44--PDHX	1	1	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	1445	259	0	0.01	0.0122	0.0122	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	PK1_PANCREAS	0	0.01	0.0244	FALSE	0	20	0	35	2	FALSE	ACH-000307
PK1_PANCREAS	DENND1A--PSMB7	1	1	DENND1A	24177	chr9:126202639:-	PSMB7	52173	chr9:127119194:-	ONLY_REF_SPLICE	YES	78	1366	0.03	0	0.0122	0.0122	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Heart_-_Atrial_Appendage=1},DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7	PK1_PANCREAS	0	0.03	0.0244	FALSE	0	0	0	2	0	FALSE	ACH-000307
PK1_PANCREAS	DENND1A--PSMB7	1	1	DENND1A	2335	chr9:126641230:-	PSMB7	52173	chr9:127119194:-	ONLY_REF_SPLICE	YES	113	1366	0.02	0	0.0122	0.0122	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Heart_-_Atrial_Appendage=1},DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7	PK1_PANCREAS	0	0.02	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000307
PK1_PANCREAS	FNDC3B--GNAS	1	1	FNDC3B	6332	chr3:171851336:+	GNAS	63465	chr20:57470667:+	ONLY_REF_SPLICE	NO	195	892	0.01	0	0.0122	0.0122	GTEx_v2:{count=1;pct=0.01%;dist=Pituitary=1},FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	PK1_PANCREAS	0	0.01	0.0244	FALSE	0	1	0	1	0	FALSE	ACH-000307
PK1_PANCREAS	KIAA0195--TOP3A	1	1	KIAA0195	8804	chr17:73482507:+	TOP3A	37292	chr17:18194000:-	ONLY_REF_SPLICE	YES	94	101	0.02	0.02	0.0122	0.0122	KIAA0195->chr17:73437240-73496171:+,TOP3A->chr17:18174742-18218321:-,topoisomerase_(DNA)_III_alpha	PK1_PANCREAS	0.02	0.02	0.0244	TRUE	0	0	0	1	0	FALSE	ACH-000307
PK1_PANCREAS	MYO15B--UBALD2	1	1	MYO15B	5244	chr17:73588382:+	UBALD2	37085	chr17:74266275:+	ONLY_REF_SPLICE	YES	0	30	1	0.06	0.0122	0.0122	MYO15B->chr17:73584139-73622929:+,myosin_XVB,UBALD2->UBA_like_domain_containing_2,chr17:74261283-74267375:+	PK1_PANCREAS	0.06	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000307
PK1_PANCREAS	NCOR2--UBC	1	1	NCOR2	2329	chr12:125020111:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	8	82	0.2	0.02	0.0122	0.0122	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	PK1_PANCREAS	0.02	0.2	0.0244	TRUE	48	117	12	14	0	FALSE	ACH-000307
PK1_PANCREAS	NCOR2--UBC	1	1	NCOR2	3484	chr12:125002686:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	35	82	0.05	0.02	0.0122	0.0122	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	PK1_PANCREAS	0.02	0.05	0.0244	TRUE	7	26	3	12	0	FALSE	ACH-000307
PK1_PANCREAS	NCOR2--UBC	1	1	NCOR2	11484	chr12:124934361:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	147	82	0.01	0.02	0.0122	0.0122	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	PK1_PANCREAS	0.01	0.02	0.0244	FALSE	12	15	2	11	0	FALSE	ACH-000307
PK1_PANCREAS	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	2	12	0.5	0.14	0.0122	0.0122	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PK1_PANCREAS	0.14	0.5	0.0244	FALSE	25	145	6	90	0	FALSE	ACH-000307
PK1_PANCREAS	OSBPL2--PSMA7	1	1	OSBPL2	6622	chr20:60847315:+	PSMA7	24447	chr20:60716000:-	ONLY_REF_SPLICE	YES	224	4139	0.01	0	0.0122	0.0122	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1},LOCAL_INVERSION:+:-:[95084],OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	PK1_PANCREAS	0	0.01	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000307
PK1_PANCREAS	PILRB--GATS	1	1	PILRB	2935	chr7:99936512:+	GATS	25912	chr7:99810756:-	ONLY_REF_SPLICE	NO	91	6	0.02	0.25	0.0122	0.0122	GTEx&tcga_normals:22/3694=0.60%,GTEx_FI:{Muscle=[count:2=pct:0.9],Brain=[count:1=pct:0.2]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellum=1},LOCAL_INVERSION:+:-,chr7:[63900],PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta,GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-	PK1_PANCREAS	0.02	0.25	0.0244	TRUE	3	7	0	3	0	FALSE	ACH-000307
PK1_PANCREAS	POLE4--RP11-355F16.1	1	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	561	0	0	1	0.0122	0.0122	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	PK1_PANCREAS	0	1	0.0244	FALSE	5	7	0	37	0	FALSE	ACH-000307
PK1_PANCREAS	PRSS23--TMEM135	1	1	PRSS23	8412	chr11:86534635:+	TMEM135	33802	chr11:87006824:+	ONLY_REF_SPLICE	YES	170	28	0.01	0.07	0.0122	0.0122	NEIGHBORS[84934],PRSS23->chr11:86502101-86663952:+,protease,_serine_23,TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135	PK1_PANCREAS	0.01	0.07	0.0244	FALSE	0	0	0	2	0	FALSE	ACH-000307
PK1_PANCREAS	PTGES3--HNRNPF	1	1	PTGES3	1378	chr12:57081782:-	HNRNPF	15664	chr10:43892038:-	ONLY_REF_SPLICE	YES	3168	393	0	0.01	0.0122	0.0122	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F	PK1_PANCREAS	0	0.01	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000307
PK1_PANCREAS	PVT1--MYC	1	1	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	127	330	0.02	0.01	0.0122	0.0122	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	PK1_PANCREAS	0.01	0.02	0.0244	FALSE	3	14	0	24	0	FALSE	ACH-000307
PK1_PANCREAS	RPLP1--KIF23	1	1	RPLP1	1938	chr15:69746060:+	KIF23	16465	chr15:69721450:+	ONLY_REF_SPLICE	YES	6204	284	0	0.01	0.0122	0.0122	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[4359],RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,KIF23->chr15:69706585-69740764:+,kinesin_family_member_23	PK1_PANCREAS	0	0.01	0.0244	FALSE	0	0	0	5	0	FALSE	ACH-000307
PK1_PANCREAS	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	10409	chr12:66232299:+	ONLY_REF_SPLICE	YES	0	317	1	0.01	0.0122	0.0122	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	PK1_PANCREAS	0.01	1	0.0244	FALSE	0	2	0	7	0	FALSE	ACH-000307
PK1_PANCREAS	SORBS2--RP11-404J23.1	1	1	SORBS2	9032	chr4:186696381:-	RP11-404J23.1	56431	chr4:180311243:-	ONLY_REF_SPLICE	NO	59	0	0.03	1	0.0122	0.0122	SORBS2->Oncogene{Bushman},chr4:186506598-186877806:-,sorbin_and_SH3_domain_containing_2,RP11-404J23.1->chr4:180310288-180386459:-	PK1_PANCREAS	0.03	1	0.0244	TRUE	0	0	0	1	0	FALSE	ACH-000307
PK1_PANCREAS	ST7--CAV1	1	1	ST7	1454	chr7:116593745:+	CAV1	41596	chr7:116199000:+	ONLY_REF_SPLICE	NO	79	3295	0.02	0	0.0122	0.0122	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	PK1_PANCREAS	0	0.02	0.0244	FALSE	0	1	0	1	1	FALSE	ACH-000307
PK1_PANCREAS	TIMM23--RP11-464F9.1	1	1	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	NO	754	7	0	0.22	0.0122	0.0122	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PK1_PANCREAS	0	0.22	0.0244	FALSE	5	8	0	33	0	FALSE	ACH-000307
PK1_PANCREAS	TRIO--TBC1D5	1	1	TRIO	14523	chr5:14336836:+	TBC1D5	113936	chr3:17279911:-	ONLY_REF_SPLICE	NO	276	37	0.01	0.05	0.0122	0.0122	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	PK1_PANCREAS	0.01	0.05	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000307
PK1_PANCREAS	TRPC4AP--DYNLRB1	1	1	TRPC4AP	3504	chr20:33657099:-	DYNLRB1	25267	chr20:33114073:+	ONLY_REF_SPLICE	YES	242	4	0.01	0.33	0.0122	0.0122	TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,DYNLRB1->chr20:33104214-33128762:+,dynein_light_chain_roadblock-type_1	PK1_PANCREAS	0.01	0.33	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000307
PK1_PANCREAS	USP10--COTL1	1	1	USP10	7066	chr16:84767109:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	765	927	0	0	0.0122	0.0122	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	PK1_PANCREAS	0	0	0.0244	FALSE	0	0	0	5	0	FALSE	ACH-000307
PK1_PANCREAS	ZMYND8--TMEM189	1	1	ZMYND8	6534	chr20:45976600:-	TMEM189	48776	chr20:48700791:-	ONLY_REF_SPLICE	YES	46	251	0.04	0.01	0.0122	0.0122	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,TMEM189->chr20:48697663-48770335:-,transmembrane_protein_189	PK1_PANCREAS	0.01	0.04	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000307
PATU8902_PANCREAS	ACTN4--SIPA1L3	369	346	ACTN4	1259	chr19:39138547:+	SIPA1L3	51086	chr19:38673159:+	ONLY_REF_SPLICE	YES	2774	149	0.2	0.83	3.7992	3.5624	GTEx&tcga_normals:1/3694=0.03%,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3	PATU8902_PANCREAS	0.2	0.83	7.3616	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	ATF1--POP5	257	146	ATF1	1598	chr12:51158090:+	POP5	14340	chr12:121019247:-	INCL_NON_REF_SPLICE	YES	120	0	0.77	1	2.646	1.5032	ATF1->Oncogene{Bushman},activating_transcription_factor_1,chr12:51157493-51214905:+,POP5->POP5_homolog,_ribonuclease_P/MRP_subunit,chr12:121016567-121019201:-	PATU8902_PANCREAS	0.77	1	4.1492	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	CSTF3--EIF3M	92	99	CSTF3	15502	chr11:33120236:-	EIF3M	28830	chr11:32608558:+	ONLY_REF_SPLICE	YES	79	168	0.71	0.53	0.9472	1.0193	{Klijn_CCL:Pancreas=1},CSTF3->chr11:33098734-33183917:-,cleavage_stimulation_factor_subunit_3,EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M	PATU8902_PANCREAS	0.53	0.71	1.9665	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	EIF3M--RP11-624D11.2	80	47	EIF3M	1132	chr11:32605475:+	RP11-624D11.2	18633	chr11:30066002:-	ONLY_REF_SPLICE	YES	65	0	0.66	1	0.8237	0.4839	EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M,RP11-624D11.2->chr11:30065605-30105890:-	PATU8902_PANCREAS	0.66	1	1.3076	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	TNPO2--RFX1	79	47	TNPO2	9353	chr19:12821435:-	RFX1	25026	chr19:14094407:-	ONLY_REF_SPLICE	YES	107	8	0.54	0.94	0.8134	0.4839	{Klijn_CCL:Pancreas=1},TNPO2->chr19:12810008-12834825:-,transportin_2,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	PATU8902_PANCREAS	0.54	0.94	1.2973	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	EPN2--SPACA3	66	18	EPN2	17086	chr17:19185390:+	SPACA3	35751	chr17:31302845:+	ONLY_REF_SPLICE	YES	133	0	0.39	1	0.6795	0.1853	EPN2->chr17:19118928-19240028:+,epsin_2,SPACA3->chr17:31297394-31324895:+,sperm_acrosome_associated_3	PATU8902_PANCREAS	0.39	1	0.8648	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	KANSL1--ARL17B	59	46	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	41	144	0.72	0.42	0.6075	0.4736	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	PATU8902_PANCREAS	0.42	0.72	1.0811	TRUE	181	1564	124	196	0	FALSE	ACH-000599
PATU8902_PANCREAS	TIMM23B--LINC00843	53	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5457	0.2162	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PATU8902_PANCREAS	1	1	0.7619	TRUE	508	994	45	981	0	FALSE	ACH-000599
PATU8902_PANCREAS	VCL--PLAU	38	22	VCL	2333	chr10:75802911:+	PLAU	35162	chr10:75674534:+	ONLY_REF_SPLICE	YES	497	1496	0.11	0.04	0.3912	0.2265	LOCAL_REARRANGEMENT:+:[80617],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,PLAU->chr10:75668935-75677255:+,plasminogen_activator,_urokinase	PATU8902_PANCREAS	0.04	0.11	0.6177	TRUE	0	0	0	1	0	FALSE	ACH-000599
PATU8902_PANCREAS	TIMM23--RP11-464F9.1	32	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	344	7	0.1	0.84	0.3295	0.0618	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PATU8902_PANCREAS	0.1	0.84	0.3913	TRUE	519	3926	326	965	0	FALSE	ACH-000599
PATU8902_PANCREAS	ACTN4--SIPA1L3	12	72	ACTN4	1259	chr19:39138547:+	SIPA1L3	52534	chr19:38682785:+	ONLY_REF_SPLICE	YES	2774	180	0.03	0.32	0.1236	0.7413	GTEx&tcga_normals:1/3694=0.03%,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3	PATU8902_PANCREAS	0.03	0.32	0.8649	TRUE	0	0	0	1	0	FALSE	ACH-000599
PATU8902_PANCREAS	MT-TA--MT-TC	27	11	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.278	0.1133	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PATU8902_PANCREAS	1	1	0.3913	FALSE	462	80	0	856	0	FALSE	ACH-000599
PATU8902_PANCREAS	C15orf57--CBX3	21	23	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	81	96	0.35	0.31	0.2162	0.2368	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PATU8902_PANCREAS	0.31	0.35	0.453	TRUE	267	562	48	632	0	FALSE	ACH-000599
PATU8902_PANCREAS	RP11-96H19.1--RP11-446N19.1	20	27	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	1	0.9	0.98	0.2059	0.278	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PATU8902_PANCREAS	0.9	0.98	0.4839	FALSE	515	4851	409	746	0	FALSE	ACH-000599
PATU8902_PANCREAS	RP11-96H19.1--RP11-446N19.1	14	47	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.92	1	0.1441	0.4839	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PATU8902_PANCREAS	0.92	1	0.628	FALSE	407	2205	196	549	0	FALSE	ACH-000599
PATU8902_PANCREAS	HSP90AB1--MT-RNR2	22	4	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	5766	0	0	1	0.2265	0.0412	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PATU8902_PANCREAS	0	1	0.2677	FALSE	13	9	0	364	0	FALSE	ACH-000599
PATU8902_PANCREAS	SLC7A5--MT-ND4L	14	30	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	4832	0	0.01	1	0.1441	0.3089	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8902_PANCREAS	0.01	1	0.453	FALSE	0	0	0	23	0	FALSE	ACH-000599
PATU8902_PANCREAS	NPM1P24--SET	19	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	66	3287	0.23	0.01	0.1956	0.0103	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PATU8902_PANCREAS	0.01	0.23	0.2059	TRUE	0	0	0	434	0	FALSE	ACH-000599
PATU8902_PANCREAS	WWOX--VAT1L	15	4	WWOX	10605	chr16:78198186:+	VAT1L	42429	chr16:78005747:+	ONLY_REF_SPLICE	YES	60	0	0.24	1	0.1544	0.0412	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	PATU8902_PANCREAS	0.24	1	0.1956	TRUE	0	0	0	6	0	TRUE	ACH-000599
PATU8902_PANCREAS	EPN2--SPACA3	8	31	EPN2	18723	chr17:19187027:+	SPACA3	35751	chr17:31302845:+	ONLY_REF_SPLICE	YES	116	0	0.25	1	0.0824	0.3192	EPN2->chr17:19118928-19240028:+,epsin_2,SPACA3->chr17:31297394-31324895:+,sperm_acrosome_associated_3	PATU8902_PANCREAS	0.25	1	0.4016	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	IFT80--LCA5	11	19	IFT80	14478	chr3:160073801:-	LCA5	42008	chr6:80202364:-	ONLY_REF_SPLICE	YES	142	12	0.17	0.71	0.1133	0.1956	IFT80->chr3:159974774-160117668:-,intraflagellar_transport_80,LCA5->Leber_congenital_amaurosis_5,chr6:80194708-80247175:-	PATU8902_PANCREAS	0.17	0.71	0.3089	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	HSP90AB1--MT-RNR2	14	4	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	5785	0	0	1	0.1441	0.0412	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PATU8902_PANCREAS	0	1	0.1853	FALSE	13	9	0	364	0	FALSE	ACH-000599
PATU8902_PANCREAS	RP11-96H19.1--RP11-446N19.1	3	48	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0.4942	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PATU8902_PANCREAS	1	1	0.5251	FALSE	192	492	57	212	0	FALSE	ACH-000599
PATU8902_PANCREAS	PPM1D--BCAS3	12	10	PPM1D	1704	chr17:58678247:+	BCAS3	29712	chr17:58967056:+	ONLY_REF_SPLICE	YES	19	12	0.54	0.65	0.1236	0.103	NEIGHBORS[12965],PPM1D->Oncogene{Bushman},chr17:58677544-58741849:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1D,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	PATU8902_PANCREAS	0.54	0.65	0.2266	FALSE	0	0	0	1	0	FALSE	ACH-000599
PATU8902_PANCREAS	RP11-680G10.1--GSE1	12	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	39	1	0.28	0.1236	0.0309	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PATU8902_PANCREAS	0.28	1	0.1545	TRUE	465	1949	224	605	0	FALSE	ACH-000599
PATU8902_PANCREAS	SLC7A5--MT-ND1	10	7	SLC7A5	13719	chr16:87864490:-	MT-ND1	17596	chrM:3322:+	INCL_NON_REF_SPLICE	YES	5305	0	0	1	0.103	0.0721	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PATU8902_PANCREAS	0	1	0.1751	FALSE	0	0	0	11	0	FALSE	ACH-000599
PATU8902_PANCREAS	CALM3--MT-ND4L	9	10	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1362	0	0.01	1	0.0927	0.103	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8902_PANCREAS	0.01	1	0.1957	FALSE	1	1	0	107	0	FALSE	ACH-000599
PATU8902_PANCREAS	EPN2--SPACA3	5	26	EPN2	18494	chr17:19186798:+	SPACA3	35751	chr17:31302845:+	INCL_NON_REF_SPLICE	YES	148	0	0.17	1	0.0515	0.2677	EPN2->chr17:19118928-19240028:+,epsin_2,SPACA3->chr17:31297394-31324895:+,sperm_acrosome_associated_3	PATU8902_PANCREAS	0.17	1	0.3192	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	EPN2--SPACA3	6	20	EPN2	17086	chr17:19185390:+	SPACA3	35747	chr17:31302841:+	INCL_NON_REF_SPLICE	YES	133	0	0.16	1	0.0618	0.2059	EPN2->chr17:19118928-19240028:+,epsin_2,SPACA3->chr17:31297394-31324895:+,sperm_acrosome_associated_3	PATU8902_PANCREAS	0.16	1	0.2677	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	RP11-96H19.1--RP11-446N19.1	4	28	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.0412	0.2883	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PATU8902_PANCREAS	0.97	1	0.3295	FALSE	467	2173	244	435	0	FALSE	ACH-000599
PATU8902_PANCREAS	RP11-114H23.1--RP11-114H23.2	8	10	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.0824	0.103	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	PATU8902_PANCREAS	0.95	1	0.1854	FALSE	81	155	12	160	0	FALSE	ACH-000599
PATU8902_PANCREAS	ATF1--POP5	1	33	ATF1	1598	chr12:51158090:+	POP5	15861	chr12:121017726:-	ONLY_REF_SPLICE	NO	120	405	0.22	0.08	0.0103	0.3398	ATF1->Oncogene{Bushman},activating_transcription_factor_1,chr12:51157493-51214905:+,POP5->POP5_homolog,_ribonuclease_P/MRP_subunit,chr12:121016567-121019201:-	PATU8902_PANCREAS	0.08	0.22	0.3501	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	C15orf57--CBX3	5	16	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	79	96	0.21	0.18	0.0515	0.1647	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PATU8902_PANCREAS	0.18	0.21	0.2162	TRUE	267	562	48	632	0	FALSE	ACH-000599
PATU8902_PANCREAS	MT-ND5--MT-CO3	6	9	MT-ND5	2730	chrM:14066:+	MT-CO3	6178	chrM:9572:+	INCL_NON_REF_SPLICE	NO	5	20925	0.75	0	0.0618	0.0927	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PATU8902_PANCREAS	0	0.75	0.1545	FALSE	0	15	2	17	0	FALSE	ACH-000599
PATU8902_PANCREAS	ATF1--POP5	8	0	ATF1	1032	chr12:51157524:+	POP5	14340	chr12:121019247:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0824	0	ATF1->Oncogene{Bushman},activating_transcription_factor_1,chr12:51157493-51214905:+,POP5->POP5_homolog,_ribonuclease_P/MRP_subunit,chr12:121016567-121019201:-	PATU8902_PANCREAS	1	1	0.0824	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	MT-ND5--MT-CO3	3	17	MT-ND5	2613	chrM:13949:+	MT-CO3	5822	chrM:9216:+	INCL_NON_REF_SPLICE	YES	2796	0	0.01	1	0.0309	0.175	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PATU8902_PANCREAS	0.01	1	0.2059	FALSE	0	15	2	18	0	FALSE	ACH-000599
PATU8902_PANCREAS	MT-ND5--MT-CO3	6	5	MT-ND5	2591	chrM:13927:+	MT-CO3	6171	chrM:9565:+	INCL_NON_REF_SPLICE	YES	2946	21049	0	0	0.0618	0.0515	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PATU8902_PANCREAS	0	0	0.1133	FALSE	0	15	2	18	0	FALSE	ACH-000599
PATU8902_PANCREAS	MT-ND5--MT-CO3	3	16	MT-ND5	2667	chrM:14003:+	MT-CO3	5959	chrM:9353:+	INCL_NON_REF_SPLICE	YES	1525	10507	0.01	0	0.0309	0.1647	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PATU8902_PANCREAS	0	0.01	0.1956	FALSE	0	15	2	18	0	FALSE	ACH-000599
PATU8902_PANCREAS	MT-TA--MT-TC	4	12	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0.1236	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PATU8902_PANCREAS	1	1	0.1648	FALSE	462	80	0	856	0	FALSE	ACH-000599
PATU8902_PANCREAS	RP11-123O10.4--GRIP1	6	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0618	0.0206	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PATU8902_PANCREAS	1	1	0.0824	FALSE	416	2512	207	587	0	FALSE	ACH-000599
PATU8902_PANCREAS	AC002066.1--AC073130.1	6	1	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	24	0	0.23	1	0.0618	0.0103	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	PATU8902_PANCREAS	0.23	1	0.0721	FALSE	0	3	0	33	0	FALSE	ACH-000599
PATU8902_PANCREAS	NPM1P24--SET	6	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	YES	66	3015	0.1	0	0.0618	0.0103	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PATU8902_PANCREAS	0	0.1	0.0721	FALSE	0	0	0	434	0	FALSE	ACH-000599
PATU8902_PANCREAS	TUBB4B--FTH1	6	0	TUBB4B	1128	chr9:140135792:+	FTH1	6697	chr11:61734931:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0618	0	TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	PATU8902_PANCREAS	1	1	0.0618	TRUE	0	0	0	6	0	TRUE	ACH-000599
PATU8902_PANCREAS	EPN2--SPACA3	2	13	EPN2	18723	chr17:19187027:+	SPACA3	39006	chr17:31322427:+	ONLY_REF_SPLICE	YES	116	8	0.11	0.65	0.0206	0.1338	EPN2->chr17:19118928-19240028:+,epsin_2,SPACA3->chr17:31297394-31324895:+,sperm_acrosome_associated_3	PATU8902_PANCREAS	0.11	0.65	0.1544	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	JUP--MT-CO3	4	5	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	906	21021	0.01	0	0.0412	0.0515	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PATU8902_PANCREAS	0	0.01	0.0927	FALSE	0	0	0	33	0	FALSE	ACH-000599
PATU8902_PANCREAS	NPM1P24--SET	5	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	66	3042	0.08	0	0.0515	0.0103	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PATU8902_PANCREAS	0	0.08	0.0618	FALSE	0	0	0	434	0	FALSE	ACH-000599
PATU8902_PANCREAS	MT-ND5--MT-CO3	4	4	MT-ND5	2805	chrM:14141:+	MT-CO3	6211	chrM:9605:+	INCL_NON_REF_SPLICE	YES	0	20754	1	0	0.0412	0.0412	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PATU8902_PANCREAS	0	1	0.0824	FALSE	0	15	2	17	0	FALSE	ACH-000599
PATU8902_PANCREAS	KANSL1--ARL17B	2	11	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	50	144	0.21	0.08	0.0206	0.1133	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	PATU8902_PANCREAS	0.08	0.21	0.1339	TRUE	105	90	7	93	0	FALSE	ACH-000599
PATU8902_PANCREAS	HBS1L--CTA-212D2.2	4	2	HBS1L	2312	chr6:135375854:-	CTA-212D2.2	33402	chr6:135376587:+	INCL_NON_REF_SPLICE	YES	8	0	0.43	1	0.0412	0.0206	NEIGHBORS_OVERLAP:-:+:[5517],HBS1L->HBS1_like_translational_GTPase,chr6:135281516-135424194:-,CTA-212D2.2->chr6:135376171-135381688:+	PATU8902_PANCREAS	0.43	1	0.0618	FALSE	0	0	0	1	0	FALSE	ACH-000599
PATU8902_PANCREAS	TMC7--SYT17	3	6	TMC7	5209	chr16:19033118:+	SYT17	36889	chr16:19236005:+	ONLY_REF_SPLICE	YES	30	18	0.23	0.33	0.0309	0.0618	TMC7->chr16:18995256-19075264:+,transmembrane_channel_like_7,SYT17->chr16:19179293-19279652:+,synaptotagmin_17	PATU8902_PANCREAS	0.23	0.33	0.0927	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	AC002066.1--AC073130.1	4	1	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	41	0	0.11	1	0.0412	0.0103	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	PATU8902_PANCREAS	0.11	1	0.0515	FALSE	0	1	1	30	0	FALSE	ACH-000599
PATU8902_PANCREAS	HSP90AB1--MT-RNR2	3	5	HSP90AB1	7282	chr6:44221105:+	MT-RNR2	10842	chrM:1715:+	INCL_NON_REF_SPLICE	YES	5769	0	0	1	0.0309	0.0515	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PATU8902_PANCREAS	0	1	0.0824	FALSE	13	9	0	364	0	FALSE	ACH-000599
PATU8902_PANCREAS	NPM1P24--SET	4	1	NPM1P24	1526	chr10:74677767:-	SET	12291	chr9:131456186:+	INCL_NON_REF_SPLICE	NO	66	3300	0.07	0	0.0412	0.0103	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PATU8902_PANCREAS	0	0.07	0.0515	FALSE	0	0	0	434	0	FALSE	ACH-000599
PATU8902_PANCREAS	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PATU8902_PANCREAS	1	1	0.0412	FALSE	462	80	0	856	0	FALSE	ACH-000599
PATU8902_PANCREAS	MT-ND5--MT-CO3	3	3	MT-ND5	2217	chrM:13553:+	MT-CO3	6247	chrM:9641:+	INCL_NON_REF_SPLICE	YES	3160	21146	0	0	0.0309	0.0309	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PATU8902_PANCREAS	0	0	0.0618	FALSE	0	15	2	18	0	FALSE	ACH-000599
PATU8902_PANCREAS	RP11-680G10.1--GSE1	3	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	18	1	0.25	0.0309	0.0309	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PATU8902_PANCREAS	0.25	1	0.0618	TRUE	458	1351	185	561	0	FALSE	ACH-000599
PATU8902_PANCREAS	EPN2--SPACA3	2	6	EPN2	7037	chr17:19140844:+	SPACA3	35751	chr17:31302845:+	ONLY_REF_SPLICE	YES	70	0	0.1	1	0.0206	0.0618	EPN2->chr17:19118928-19240028:+,epsin_2,SPACA3->chr17:31297394-31324895:+,sperm_acrosome_associated_3	PATU8902_PANCREAS	0.1	1	0.0824	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	TMC7--SYT17	2	6	TMC7	6292	chr16:19034517:+	SYT17	36889	chr16:19236005:+	ONLY_REF_SPLICE	YES	23	18	0.26	0.31	0.0206	0.0618	TMC7->chr16:18995256-19075264:+,transmembrane_channel_like_7,SYT17->chr16:19179293-19279652:+,synaptotagmin_17	PATU8902_PANCREAS	0.26	0.31	0.0824	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	NDUFA4--PHF14	3	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	1336	93	0	0.04	0.0309	0.0103	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	PATU8902_PANCREAS	0	0.04	0.0412	FALSE	19	32	3	60	0	FALSE	ACH-000599
PATU8902_PANCREAS	NPM1P24--SET	3	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	66	2721	0.06	0	0.0309	0.0103	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PATU8902_PANCREAS	0	0.06	0.0412	FALSE	0	0	0	434	0	FALSE	ACH-000599
PATU8902_PANCREAS	OSBPL8--P2RY2	3	1	OSBPL8	8802	chr12:76844631:-	P2RY2	40020	chr11:72939026:+	ONLY_REF_SPLICE	YES	106	205	0.04	0.02	0.0309	0.0103	OSBPL8->chr12:76745577-76953589:-,oxysterol_binding_protein_like_8,P2RY2->chr11:72929343-72947397:+,purinergic_receptor_P2Y2	PATU8902_PANCREAS	0.02	0.04	0.0412	TRUE	0	0	0	1	0	FALSE	ACH-000599
PATU8902_PANCREAS	TUBB4B--FTH1	3	1	TUBB4B	1143	chr9:140135807:+	FTH1	6697	chr11:61734931:-	INCL_NON_REF_SPLICE	NO	7	8912	0.36	0	0.0309	0.0103	TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	PATU8902_PANCREAS	0	0.36	0.0412	FALSE	0	0	0	6	0	FALSE	ACH-000599
PATU8902_PANCREAS	PPM1D--BCAS3	1	6	PPM1D	1704	chr17:58678247:+	BCAS3	30789	chr17:58979981:+	ONLY_REF_SPLICE	YES	19	8	0.27	0.47	0.0103	0.0618	NEIGHBORS[12965],PPM1D->Oncogene{Bushman},chr17:58677544-58741849:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1D,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	PATU8902_PANCREAS	0.27	0.47	0.0721	FALSE	0	0	0	1	0	FALSE	ACH-000599
PATU8902_PANCREAS	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0206	0.0103	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PATU8902_PANCREAS	0.43	1	0.0309	FALSE	292	1546	117	613	0	FALSE	ACH-000599
PATU8902_PANCREAS	CAV1--CAV2	2	0	CAV1	2905	chr7:116166743:+	CAV2	32473	chr7:116146025:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GTEx&tcga_normals:1/3694=0.03%,PROTCLUST,LOCAL_REARRANGEMENT:+:[16244],CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+,CAV2->caveolin_2,chr7:115927434-116148595:+	PATU8902_PANCREAS	1	1	0.0206	TRUE	0	0	0	3	0	TRUE	ACH-000599
PATU8902_PANCREAS	LINC00338--PIP5K1C	2	0	LINC00338	4678	chr17:75089429:+	PIP5K1C	20720	chr19:3647384:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	LINC00338->chr17:75082798-75091068:+,PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma	PATU8902_PANCREAS	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	NCOA4--RP11-475I24.1	2	0	NCOA4	1189	chr10:51565296:+	RP11-475I24.1	18684	chr9:44345689:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	NCOA4->Oncogene{Bushman},chr10:51565108-51590734:+,nuclear_receptor_coactivator_4,RP11-475I24.1->chr9:44343366-44345689:-	PATU8902_PANCREAS	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	RPSAP52--HMGA2	2	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	PATU8902_PANCREAS	1	1	0.0206	FALSE	0	59	0	125	0	FALSE	ACH-000599
PATU8902_PANCREAS	SP3--PSMD14	2	0	SP3	2942	chr2:174828489:-	PSMD14	23930	chr2:162223989:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	SP3->Sp3_transcription_factor,chr2:174771187-174830430:-,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	PATU8902_PANCREAS	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	WWOX--VAT1L	1	4	WWOX	23541	chr16:78466649:+	VAT1L	34273	chr16:77850818:+	ONLY_REF_SPLICE	NO	52	0	0.09	1	0.0103	0.0412	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	PATU8902_PANCREAS	0.09	1	0.0515	TRUE	0	0	0	1	0	TRUE	ACH-000599
PATU8902_PANCREAS	ZNF519--CHMP1A	1	2	ZNF519	2343	chr18:14124349:-	CHMP1A	27273	chr16:89713739:-	ONLY_REF_SPLICE	YES	23	884	0.12	0	0.0103	0.0206	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Muscularis=1},ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	PATU8902_PANCREAS	0	0.12	0.0309	FALSE	1	2	0	4	2	FALSE	ACH-000599
PATU8902_PANCREAS	AC002066.1--AC073130.1	1	1	AC002066.1	1112	chr7:116139408:-	AC073130.1	13157	chr7:115924460:-	ONLY_REF_SPLICE	YES	24	0	0.08	1	0.0103	0.0103	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	PATU8902_PANCREAS	0.08	1	0.0206	FALSE	0	0	0	2	0	FALSE	ACH-000599
PATU8902_PANCREAS	AC002066.1--CAV1	1	1	AC002066.1	1112	chr7:116139408:-	CAV1	14768	chr7:116199000:+	ONLY_REF_SPLICE	YES	24	6799	0.08	0	0.0103	0.0103	LOCAL_INVERSION:-:+:[25320],AC002066.1->chr7:115878314-116139519:-,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	PATU8902_PANCREAS	0	0.08	0.0206	FALSE	0	0	1	6	0	FALSE	ACH-000599
PATU8902_PANCREAS	HOXA3--SKAP2	1	1	HOXA3	8123	chr7:27153244:-	SKAP2	25075	chr7:26883756:-	ONLY_REF_SPLICE	YES	77	400	0.03	0	0.0103	0.0103	HOXA3->Oncogene{Bushman},chr7:27145803-27192200:-,homeobox_A3,SKAP2->chr7:26706681-27034858:-,src_kinase_associated_phosphoprotein_2	PATU8902_PANCREAS	0	0.03	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000599
PATU8902_PANCREAS	MTO1--CALB1	1	1	MTO1	3143	chr6:74176329:+	CALB1	29008	chr8:91094330:-	ONLY_REF_SPLICE	YES	182	2700	0.01	0	0.0103	0.0103	MTO1->chr6:74171301-74218959:+,mitochondrial_tRNA_translation_optimization_1,CALB1->calbindin_1,chr8:91070836-91107703:-	PATU8902_PANCREAS	0	0.01	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000599
PATU8902_PANCREAS	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	11	0	0.15	1	0.0103	0.0103	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PATU8902_PANCREAS	0.15	1	0.0206	FALSE	164	806	69	479	0	FALSE	ACH-000599
PATU8902_PANCREAS	OSBPL8--P2RY2	1	1	OSBPL8	5553	chr12:76881290:-	P2RY2	40020	chr11:72939026:+	ONLY_REF_SPLICE	YES	108	205	0.02	0.01	0.0103	0.0103	OSBPL8->chr12:76745577-76953589:-,oxysterol_binding_protein_like_8,P2RY2->chr11:72929343-72947397:+,purinergic_receptor_P2Y2	PATU8902_PANCREAS	0.01	0.02	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000599
PATU8902_PANCREAS	RP11-400N13.2--HSPA9	1	1	RP11-400N13.2	2311	chr1:222141838:+	HSPA9	17222	chr5:137895780:-	ONLY_REF_SPLICE	YES	212	2321	0.01	0	0.0103	0.0103	RP11-400N13.2->chr1:222139683-222158306:+,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	PATU8902_PANCREAS	0	0.01	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000599
PATU8902_PANCREAS	SOGA2--RPL37A	1	1	SOGA2	6342	chr18:8720494:+	RPL37A	38860	chr2:217363993:+	ONLY_REF_SPLICE	NO	61	25	0.03	0.07	0.0103	0.0103	SOGA2->chr18:8705659-8832776:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	PATU8902_PANCREAS	0.03	0.07	0.0206	TRUE	0	0	0	1	0	FALSE	ACH-000599
PATU8902_PANCREAS	TNPO2--CHMP1A	1	1	TNPO2	9353	chr19:12821435:-	CHMP1A	25295	chr16:89713739:-	ONLY_REF_SPLICE	YES	107	884	0.02	0	0.0103	0.0103	TNPO2->chr19:12810008-12834825:-,transportin_2,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	PATU8902_PANCREAS	0	0.02	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000599
PATU8902_PANCREAS	UBAP1--RBCK1	1	1	UBAP1	1236	chr9:34179238:+	RBCK1	19342	chr20:398170:+	ONLY_REF_SPLICE	NO	163	204	0.01	0.01	0.0103	0.0103	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,RBCK1->RANBP2-type_and_C3HC4-type_zinc_finger_containing_1,chr20:388142-411610:+	PATU8902_PANCREAS	0.01	0.01	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000599
PATU8902_PANCREAS	UBE2N--PPFIA2	1	1	UBE2N	1408	chr12:93835631:-	PPFIA2	58481	chr12:81657169:-	ONLY_REF_SPLICE	NO	96	0	0.02	1	0.0103	0.0103	UBE2N->chr12:93799449-93836038:-,ubiquitin_conjugating_enzyme_E2_N,PPFIA2->PTPRF_interacting_protein_alpha_2,chr12:81652045-82153332:-	PATU8902_PANCREAS	0.02	1	0.0206	TRUE	0	0	0	1	0	FALSE	ACH-000599
BT483_BREAST	KRT8--CSAD	139	54	KRT8	11078	chr12:53293559:-	CSAD	27046	chr12:53555173:-	ONLY_REF_SPLICE	YES	6739	44	0.03	0.81	1.4002	0.544	{Klijn_CCL:Cervix=1},KRT8->chr12:53290977-53343738:-,keratin_8,CSAD->chr12:53551447-53575135:-,cysteine_sulfinic_acid_decarboxylase	BT483_BREAST	0.03	0.81	1.9442	TRUE	0	0	0	1	0	FALSE	ACH-000818
BT483_BREAST	TIMM23B--LINC00843	114	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1484	0.2821	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BT483_BREAST	1	1	1.4305	TRUE	508	994	45	981	0	FALSE	ACH-000818
BT483_BREAST	SMARCB1--MARK3	97	13	SMARCB1	8973	chr22:24167602:+	MARK3	31434	chr14:103941330:+	ONLY_REF_SPLICE	YES	73	44	0.6	0.71	0.9771	0.131	SMARCB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_b,_member_1,chr22:24129150-24176703:+,MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	BT483_BREAST	0.6	0.71	1.1081	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	WDR90--MYL6	91	0	WDR90	13191	chr16:711501:+	MYL6	24172	chr12:56554027:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.9167	0	WDR90->WD_repeat_domain_90,chr16:699311-717833:+,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	BT483_BREAST	1	1	0.9167	TRUE	0	1	0	1	0	TRUE	ACH-000818
BT483_BREAST	APOPT1--IGH@	85	19	APOPT1	3684	chr14:104040507:+	IGH@	61983	chr14:106691977:-	ONLY_REF_SPLICE	YES	50	11	0.68	0.9	0.8563	0.1914	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.68	0.9	1.0477	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	MT-ND6--MT-TE	71	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7152	0.0705	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT483_BREAST	1	1	0.7857	FALSE	499	1288	110	792	0	FALSE	ACH-000818
BT483_BREAST	TIMM23--RP11-464F9.1	71	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	122	3	0.37	0.96	0.7152	0.0201	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BT483_BREAST	0.37	0.96	0.7353	TRUE	519	3926	326	965	0	FALSE	ACH-000818
BT483_BREAST	MT-TA--MT-TC	48	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4835	0.0705	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BT483_BREAST	1	1	0.554	FALSE	462	80	0	856	0	FALSE	ACH-000818
BT483_BREAST	RP11-123O10.4--GRIP1	33	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3324	0.0806	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BT483_BREAST	1	1	0.413	FALSE	416	2512	207	587	0	FALSE	ACH-000818
BT483_BREAST	MT-ND6--MT-TE	32	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3224	0.0705	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT483_BREAST	1	1	0.3929	FALSE	499	1288	110	792	0	FALSE	ACH-000818
BT483_BREAST	APOPT1--IGH@	27	23	APOPT1	3684	chr14:104040507:+	IGH@	26826	chr14:107114045:-	ONLY_REF_SPLICE	YES	50	0	0.5	1	0.272	0.2317	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.5	1	0.5037	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	APOPT1--IGH@	27	23	APOPT1	3684	chr14:104040507:+	IGH@	20741	chr14:107199242:-	ONLY_REF_SPLICE	YES	50	0	0.5	1	0.272	0.2317	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.5	1	0.5037	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	MT-ND6--MT-TE	28	19	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.2821	0.1914	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT483_BREAST	0.94	1	0.4735	FALSE	499	1288	110	792	0	FALSE	ACH-000818
BT483_BREAST	APOPT1--IGH@	26	23	APOPT1	3684	chr14:104040507:+	IGH@	17667	chr14:107218980:-	ONLY_REF_SPLICE	YES	50	0	0.49	1	0.2619	0.2317	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.49	1	0.4936	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	APOPT1--IGH@	26	22	APOPT1	3684	chr14:104040507:+	IGH@	39121	chr14:106994118:-	ONLY_REF_SPLICE	YES	50	1	0.49	0.98	0.2619	0.2216	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.49	0.98	0.4835	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	APOPT1--IGH@	26	20	APOPT1	3684	chr14:104040507:+	IGH@	46932	chr14:106866707:-	ONLY_REF_SPLICE	YES	50	1	0.48	0.98	0.2619	0.2015	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.48	0.98	0.4634	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	APOPT1--IGH@	26	20	APOPT1	3684	chr14:104040507:+	IGH@	48396	chr14:106845627:-	ONLY_REF_SPLICE	YES	50	3	0.48	0.94	0.2619	0.2015	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.48	0.94	0.4634	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	MT-ND5--MT-ATP8	29	3	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3850	26	0.01	0.55	0.2921	0.0302	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	0.01	0.55	0.3223	FALSE	43	37	8	105	0	FALSE	ACH-000818
BT483_BREAST	APOPT1--IGH@	22	23	APOPT1	3684	chr14:104040507:+	IGH@	25295	chr14:107131334:-	ONLY_REF_SPLICE	YES	50	0	0.47	1	0.2216	0.2317	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.47	1	0.4533	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	APOPT1--IGH@	22	22	APOPT1	3684	chr14:104040507:+	IGH@	34558	chr14:107048973:-	ONLY_REF_SPLICE	YES	50	0	0.47	1	0.2216	0.2216	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.47	1	0.4432	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	RP11-680G10.1--GSE1	26	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	97	1	0.24	0.2619	0.0403	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BT483_BREAST	0.24	1	0.3022	TRUE	465	1949	224	605	0	FALSE	ACH-000818
BT483_BREAST	APOPT1--IGH@	18	23	APOPT1	3684	chr14:104040507:+	IGH@	19201	chr14:107211242:-	ONLY_REF_SPLICE	YES	50	0	0.45	1	0.1813	0.2317	APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,IGH@->Oncogene{Bushman}	BT483_BREAST	0.45	1	0.413	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	MT-ND5--MT-ATP8	22	5	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5	0	0.84	1	0.2216	0.0504	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	0.84	1	0.272	FALSE	43	37	8	105	0	FALSE	ACH-000818
BT483_BREAST	MT-ND5--MT-ATP8	22	1	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4786	72	0	0.24	0.2216	0.0101	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	0	0.24	0.2317	FALSE	43	37	8	105	0	FALSE	ACH-000818
BT483_BREAST	SEPT5--AC008132.14	20	3	SEPT5	1328	chr22:19702314:+	AC008132.14	12895	chr22:18782304:-	INCL_NON_REF_SPLICE	YES	9	0	0.72	1	0.2015	0.0302	SEPT5->Oncogene{Bushman},chr22:19701987-19712295:+,septin_5,AC008132.14->chr22:18781927-18782317:-	BT483_BREAST	0.72	1	0.2317	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	MT-ND4--MT-ATP8	20	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2015	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	1	1	0.2015	FALSE	230	193	14	283	0	FALSE	ACH-000818
BT483_BREAST	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1713	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	BT483_BREAST	1	1	0.1713	TRUE	0	0	0	518	0	FALSE	ACH-000818
BT483_BREAST	RP11-96H19.1--RP11-446N19.1	12	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1209	0.0705	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BT483_BREAST	0.95	1	0.1914	FALSE	515	4851	409	746	0	FALSE	ACH-000818
BT483_BREAST	PDE6B--PPP2R2D	13	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.131	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	BT483_BREAST	1	1	0.131	TRUE	7	65	3	22	0	FALSE	ACH-000818
BT483_BREAST	MT-ND5--MT-ATP8	12	2	MT-ND5	2514	chrM:13850:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3189	72	0	0.16	0.1209	0.0201	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	0	0.16	0.141	FALSE	43	37	8	105	0	FALSE	ACH-000818
BT483_BREAST	MT-ND6--MT-TE	5	30	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0504	0.3022	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT483_BREAST	0.92	1	0.3526	FALSE	499	1288	110	792	0	FALSE	ACH-000818
BT483_BREAST	MT-ND6--MT-TE	7	21	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0705	0.2115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT483_BREAST	1	1	0.282	FALSE	499	1288	110	792	0	FALSE	ACH-000818
BT483_BREAST	DBP--AKT2	11	3	DBP	2859	chr19:49138837:-	AKT2	35773	chr19:40739858:-	ONLY_REF_SPLICE	YES	2	112	0.88	0.11	0.1108	0.0302	DBP->D-box_binding_PAR_bZIP_transcription_factor,chr19:49133287-49140695:-,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	BT483_BREAST	0.11	0.88	0.141	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	MT-ND6--MT-TE	4	29	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0403	0.2921	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT483_BREAST	0.92	1	0.3324	FALSE	499	1288	110	792	0	FALSE	ACH-000818
BT483_BREAST	MT-TA--MT-TC	9	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0907	0.0705	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BT483_BREAST	1	1	0.1612	FALSE	462	80	0	856	0	FALSE	ACH-000818
BT483_BREAST	MT-ND4--MT-ATP8	10	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1007	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	1	1	0.1007	FALSE	231	205	14	283	0	FALSE	ACH-000818
BT483_BREAST	MT-ND4--MT-ATP8	9	2	MT-ND4	2053	chrM:11812:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9557	73	0	0.13	0.0907	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	0	0.13	0.1108	FALSE	231	215	16	283	0	FALSE	ACH-000818
BT483_BREAST	MT-ND5--MT-ATP8	9	1	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	5	484	0.67	0.02	0.0907	0.0101	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	0.02	0.67	0.1008	FALSE	43	37	8	105	0	FALSE	ACH-000818
BT483_BREAST	MT-ND4--MT-ATP8	9	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0907	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	1	1	0.0907	FALSE	230	198	14	283	0	FALSE	ACH-000818
BT483_BREAST	RP11-680G10.1--GSE1	8	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	26	1	0.32	0.0806	0.0403	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BT483_BREAST	0.32	1	0.1209	TRUE	458	1351	185	561	0	FALSE	ACH-000818
BT483_BREAST	MT-ATP6--MT-ND1	8	1	MT-ATP6	1098	chrM:8624:+	MT-ND1	4697	chrM:3322:+	INCL_NON_REF_SPLICE	YES	7166	0	0	1	0.0806	0.0101	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	BT483_BREAST	0	1	0.0907	FALSE	78	55	12	7	0	FALSE	ACH-000818
BT483_BREAST	MT-CO2--MT-CO1	5	13	MT-CO2	1282	chrM:7867:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	12	15395	0.6	0	0.0504	0.131	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT483_BREAST	0	0.6	0.1814	FALSE	36	10	0	27	0	FALSE	ACH-000818
BT483_BREAST	MT-ND4--MT-ATP8	8	1	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	10439	1396	0	0.01	0.0806	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	0	0.01	0.0907	FALSE	231	217	16	283	0	FALSE	ACH-000818
BT483_BREAST	MT-ND6--MT-TE	8	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0806	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT483_BREAST	1	1	0.0806	FALSE	499	1288	110	792	0	FALSE	ACH-000818
BT483_BREAST	MT-CO2--MT-CO1	5	10	MT-CO2	1443	chrM:8028:+	MT-CO1	5365	chrM:6584:+	INCL_NON_REF_SPLICE	YES	11	17225	0.58	0	0.0504	0.1007	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT483_BREAST	0	0.58	0.1511	FALSE	36	10	0	27	0	FALSE	ACH-000818
BT483_BREAST	FSIP1--RP11-624L4.1	6	4	FSIP1	15137	chr15:39893046:-	RP11-624L4.1	27601	chr15:39363809:-	ONLY_REF_SPLICE	YES	56	0	0.15	1	0.0604	0.0403	GTEx_FI:{Breast=[count:2=pct:1.8],Brain=[count:1=pct:0.2]},FSIP1->chr15:39892232-40075031:-,fibrous_sheath_interacting_protein_1,RP11-624L4.1->chr15:39157523-39719396:-	BT483_BREAST	0.15	1	0.1007	TRUE	3	181	3	5	0	FALSE	ACH-000818
BT483_BREAST	MT-ATP6--MT-ND1	7	0	MT-ATP6	1126	chrM:8652:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0705	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	BT483_BREAST	1	1	0.0705	FALSE	78	55	12	7	0	FALSE	ACH-000818
BT483_BREAST	MT-CO2--MT-CO1	6	4	MT-CO2	1267	chrM:7852:+	MT-CO1	5592	chrM:6811:+	INCL_NON_REF_SPLICE	YES	15	7984	0.4	0	0.0604	0.0403	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT483_BREAST	0	0.4	0.1007	FALSE	36	10	0	27	0	FALSE	ACH-000818
BT483_BREAST	RP11-634B7.4--TRIM58	6	4	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0604	0.0403	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	BT483_BREAST	1	1	0.1007	TRUE	158	633	76	73	0	FALSE	ACH-000818
BT483_BREAST	MT-ND4--MT-ATP8	6	3	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	10350	0	0	1	0.0604	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	0	1	0.0906	FALSE	231	217	16	283	0	FALSE	ACH-000818
BT483_BREAST	MT-CO2--MT-CO1	4	10	MT-CO2	1227	chrM:7812:+	MT-CO1	5226	chrM:6445:+	INCL_NON_REF_SPLICE	NO	12	15694	0.54	0	0.0403	0.1007	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT483_BREAST	0	0.54	0.141	FALSE	36	10	0	27	0	FALSE	ACH-000818
BT483_BREAST	MT-CO2--MT-CO1	4	10	MT-CO2	1231	chrM:7816:+	MT-CO1	5001	chrM:6220:+	INCL_NON_REF_SPLICE	YES	12	15535	0.54	0	0.0403	0.1007	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT483_BREAST	0	0.54	0.141	FALSE	36	10	0	27	0	FALSE	ACH-000818
BT483_BREAST	MT-ND4--MT-ATP8	5	6	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1014	0	0.01	1	0.0504	0.0604	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	0.01	1	0.1108	FALSE	216	209	16	281	0	FALSE	ACH-000818
BT483_BREAST	NRIP1--AF127936.7	6	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0604	0.0201	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BT483_BREAST	0.89	1	0.0805	FALSE	292	1546	117	613	0	FALSE	ACH-000818
BT483_BREAST	MT-ND4--MT-ATP8	6	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10291	26	0	0.21	0.0604	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	0	0.21	0.0705	FALSE	231	217	16	283	0	FALSE	ACH-000818
BT483_BREAST	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0.0101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BT483_BREAST	1	1	0.0705	FALSE	462	80	0	856	0	FALSE	ACH-000818
BT483_BREAST	MT-ND4--MT-ATP8	6	0	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	1	1	0.0604	FALSE	231	217	16	283	0	FALSE	ACH-000818
BT483_BREAST	MT-ND4--MT-ATP8	6	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	1	1	0.0604	FALSE	230	193	14	283	0	FALSE	ACH-000818
BT483_BREAST	NIPA2--POLA1	6	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	BT483_BREAST	1	1	0.0604	TRUE	46	1352	75	139	0	FALSE	ACH-000818
BT483_BREAST	REV3L--RPL28	6	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	BT483_BREAST	1	1	0.0604	TRUE	22	156	2	142	0	FALSE	ACH-000818
BT483_BREAST	RP11-123O10.4--GRIP1	5	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0504	0.0403	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BT483_BREAST	1	1	0.0907	FALSE	93	270	15	244	0	FALSE	ACH-000818
BT483_BREAST	FTH1--ACTB	5	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	773	2	0.01	0.75	0.0504	0.0101	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	BT483_BREAST	0.01	0.75	0.0605	FALSE	1	0	0	97	0	FALSE	ACH-000818
BT483_BREAST	MT-CO2--MT-CO1	4	5	MT-CO2	1222	chrM:7807:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12	16692	0.43	0	0.0403	0.0504	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT483_BREAST	0	0.43	0.0907	FALSE	36	10	0	27	0	FALSE	ACH-000818
BT483_BREAST	MT-CO2--MT-CO1	4	5	MT-CO2	1231	chrM:7816:+	MT-CO1	5348	chrM:6567:+	INCL_NON_REF_SPLICE	YES	12	16548	0.43	0	0.0403	0.0504	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT483_BREAST	0	0.43	0.0907	FALSE	36	10	0	27	0	FALSE	ACH-000818
BT483_BREAST	MT-CO2--MT-CO1	5	0	MT-CO2	1240	chrM:7825:+	MT-CO1	5908	chrM:7127:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0504	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BT483_BREAST	1	1	0.0504	FALSE	36	10	0	27	0	FALSE	ACH-000818
BT483_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0504	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	1	1	0.0504	FALSE	230	198	14	283	0	FALSE	ACH-000818
BT483_BREAST	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0504	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT483_BREAST	1	1	0.0504	FALSE	499	1288	110	792	0	FALSE	ACH-000818
BT483_BREAST	MUC5B--MT-ATP6	5	0	MUC5B	37133	chr11:1282732:+	MT-ATP6	41208	chrM:8927:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0504	0	MUC5B->chr11:1244296-1283406:+,mucin_5B,_oligomeric_mucus/gel-forming,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BT483_BREAST	1	1	0.0504	FALSE	2	0	0	6	0	FALSE	ACH-000818
BT483_BREAST	MT-ND6--MT-TE	3	7	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0302	0.0705	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT483_BREAST	0.91	1	0.1007	FALSE	499	1288	110	792	0	FALSE	ACH-000818
BT483_BREAST	MT-TA--MT-TC	3	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.0705	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BT483_BREAST	1	1	0.1007	FALSE	462	80	0	856	0	FALSE	ACH-000818
BT483_BREAST	MT-ATP6--MT-ND1	3	6	MT-ATP6	1554	chrM:9080:+	MT-ND1	4888	chrM:3513:+	INCL_NON_REF_SPLICE	YES	3091	5896	0	0	0.0302	0.0604	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	BT483_BREAST	0	0	0.0906	FALSE	78	55	12	7	0	FALSE	ACH-000818
BT483_BREAST	MT-ATP6--MT-ND1	3	6	MT-ATP6	1435	chrM:8961:+	MT-ND1	4880	chrM:3505:+	INCL_NON_REF_SPLICE	YES	9304	5777	0	0	0.0302	0.0604	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	BT483_BREAST	0	0	0.0906	FALSE	78	55	12	7	0	FALSE	ACH-000818
BT483_BREAST	MT-ND4--MT-ATP8	4	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10083	73	0	0.06	0.0403	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	0	0.06	0.0504	FALSE	231	217	16	283	0	FALSE	ACH-000818
BT483_BREAST	MT-ND4--MT-ATP8	4	1	MT-ND4	2098	chrM:11857:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	8321	485	0	0.01	0.0403	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	0	0.01	0.0504	FALSE	231	215	16	283	0	FALSE	ACH-000818
BT483_BREAST	MT-ND6--MT-TE	3	5	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.0504	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT483_BREAST	1	1	0.0806	FALSE	499	1288	110	792	0	FALSE	ACH-000818
BT483_BREAST	RP11-476K15.1--CTD-2015H3.2	4	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0403	0.0101	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	BT483_BREAST	0.83	1	0.0504	FALSE	0	46	0	73	0	FALSE	ACH-000818
BT483_BREAST	MT-ATP6--MT-ND1	4	0	MT-ATP6	1111	chrM:8637:+	MT-ND1	4880	chrM:3505:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	BT483_BREAST	1	1	0.0403	FALSE	78	55	12	7	0	FALSE	ACH-000818
BT483_BREAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	1	1	0.0403	FALSE	231	204	14	283	0	FALSE	ACH-000818
BT483_BREAST	MT-ND5--MT-ATP8	4	0	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	1	1	0.0403	FALSE	43	37	8	105	0	FALSE	ACH-000818
BT483_BREAST	RP11-96H19.1--RP11-446N19.1	2	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0201	0.0705	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BT483_BREAST	0.9	1	0.0906	FALSE	407	2205	196	549	0	FALSE	ACH-000818
BT483_BREAST	MT-ND5--MT-ATP8	3	2	MT-ND5	2667	chrM:14003:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	NO	1388	72	0	0.06	0.0302	0.0201	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	0	0.06	0.0503	FALSE	43	37	8	105	0	FALSE	ACH-000818
BT483_BREAST	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.29	1	0.0302	0.0201	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BT483_BREAST	0.29	1	0.0503	FALSE	125	705	46	456	0	FALSE	ACH-000818
BT483_BREAST	DEGS2--EVL	3	1	DEGS2	4515	chr14:100615305:-	EVL	15243	chr14:100551024:+	ONLY_REF_SPLICE	YES	139	7	0.03	0.36	0.0302	0.0101	LOCAL_INVERSION:-:+:[2183],DEGS2->chr14:100612756-100626500:-,delta(4)-desaturase,_sphingolipid_2,EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+	BT483_BREAST	0.03	0.36	0.0403	TRUE	0	0	0	1	0	FALSE	ACH-000818
BT483_BREAST	KSR2--VSIG10	3	1	KSR2	1908	chr12:118405881:-	VSIG10	58008	chr12:118511797:-	ONLY_REF_SPLICE	YES	2	32	0.67	0.11	0.0302	0.0101	LOCAL_REARRANGEMENT:-:[94610],KSR2->chr12:117890817-118406788:-,kinase_suppressor_of_ras_2,VSIG10->V-set_and_immunoglobulin_domain_containing_10,chr12:118501398-118573831:-	BT483_BREAST	0.11	0.67	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	MAPK8IP3--HN1L	3	1	MAPK8IP3	4037	chr16:1779579:+	HN1L	32930	chr16:1747813:+	ONLY_REF_SPLICE	YES	28	448	0.12	0.01	0.0302	0.0101	GTEx&tcga_normals:2/3694=0.05%,{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[3903],MAPK8IP3->chr16:1756184-1820318:+,mitogen-activated_protein_kinase_8_interacting_protein_3,HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like	BT483_BREAST	0.01	0.12	0.0403	FALSE	0	0	0	1	0	FALSE	ACH-000818
BT483_BREAST	RP11-476K15.1--CTD-2015H3.2	3	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0302	0.0101	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	BT483_BREAST	0.8	1	0.0403	FALSE	0	46	0	73	0	FALSE	ACH-000818
BT483_BREAST	SLC43A2--RTN4RL1	3	1	SLC43A2	5709	chr17:1516489:-	RTN4RL1	29961	chr17:1841102:-	ONLY_REF_SPLICE	YES	16	12	0.2	0.25	0.0302	0.0101	SLC43A2->chr17:1472561-1532180:-,solute_carrier_family_43_member_2,RTN4RL1->chr17:1837971-1928639:-,reticulon_4_receptor_like_1	BT483_BREAST	0.2	0.25	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	1	1	0.0302	FALSE	231	217	16	283	0	FALSE	ACH-000818
BT483_BREAST	MT-ND5--MT-ATP8	3	0	MT-ND5	1231	chrM:12567:+	MT-ATP8	5970	chrM:8523:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BT483_BREAST	1	1	0.0302	FALSE	41	30	6	102	0	FALSE	ACH-000818
BT483_BREAST	MUC5B--MT-ATP6	3	0	MUC5B	37267	chr11:1282866:+	MT-ATP6	41232	chrM:8951:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	MUC5B->chr11:1244296-1283406:+,mucin_5B,_oligomeric_mucus/gel-forming,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BT483_BREAST	1	1	0.0302	FALSE	2	0	0	6	0	FALSE	ACH-000818
BT483_BREAST	PAK4--MT-ND4L	3	0	PAK4	12918	chr19:39669187:+	MT-ND4L	20189	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT483_BREAST	1	1	0.0302	FALSE	0	0	0	7	0	FALSE	ACH-000818
BT483_BREAST	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0101	0.0705	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BT483_BREAST	1	1	0.0806	FALSE	192	492	57	212	0	FALSE	ACH-000818
BT483_BREAST	SRPK2--PUS7	2	2	SRPK2	2897	chr7:105029095:-	PUS7	40562	chr7:105112640:-	ONLY_REF_SPLICE	YES	76	21	0.05	0.16	0.0201	0.0201	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	BT483_BREAST	0.05	0.16	0.0402	TRUE	0	1	0	1	1	TRUE	ACH-000818
BT483_BREAST	AC105760.2--BPTF	2	0	AC105760.2	2662	chr2:237992799:-	BPTF	45205	chr17:65962688:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	AC105760.2->chr2:237968077-237994460:-,BPTF->bromodomain_PHD_finger_transcription_factor,chr17:65821640-65980494:+	BT483_BREAST	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	CPD--NSRP1	2	0	CPD	22483	chr17:28783544:+	NSRP1	46341	chr17:28499560:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CPD->carboxypeptidase_D,chr17:28705923-28797007:+,NSRP1->chr17:28442539-28513493:+,nuclear_speckle_splicing_regulatory_protein_1	BT483_BREAST	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000818
BT483_BREAST	DEGS2--EVL	1	1	DEGS2	1658	chr14:100625843:-	EVL	15243	chr14:100551024:+	ONLY_REF_SPLICE	NO	328	7	0.01	0.22	0.0101	0.0101	LOCAL_INVERSION:-:+:[2183],DEGS2->chr14:100612756-100626500:-,delta(4)-desaturase,_sphingolipid_2,EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+	BT483_BREAST	0.01	0.22	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000818
SHP77_LUNG	WI2-1896O14.1--RP11-353N4.1	286	64	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	1	1	1	3.3069	0.74	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	SHP77_LUNG	1	1	4.0469	TRUE	361	258	24	38	0	FALSE	ACH-000790
SHP77_LUNG	CLEC16A--RP11-368J21.3	239	143	CLEC16A	10752	chr16:11076848:+	RP11-368J21.3	46851	chr16:22572325:+	ONLY_REF_SPLICE	YES	34	0	0.92	1	2.7635	1.6535	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,RP11-368J21.3->chr16:22557019-22588186:+	SHP77_LUNG	0.92	1	4.417	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	TIMM23B--LINC00843	78	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9019	0.185	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SHP77_LUNG	1	1	1.0869	TRUE	508	994	45	981	0	FALSE	ACH-000790
SHP77_LUNG	RP11-507B12.1--RP11-507B12.2	76	0	RP11-507B12.1	1057	chr15:62007314:-	RP11-507B12.2	6395	chr15:61927688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8788	0	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	SHP77_LUNG	1	1	0.8788	FALSE	0	0	0	4	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-RNR2	64	7	MT-ND4	1947	chrM:11706:+	MT-RNR2	5392	chrM:1684:+	INCL_NON_REF_SPLICE	NO	13810	0	0.01	1	0.74	0.0809	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SHP77_LUNG	0.01	1	0.8209	FALSE	13	19	3	21	0	FALSE	ACH-000790
SHP77_LUNG	MT-TA--MT-TN	61	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7053	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SHP77_LUNG	1	1	0.7053	FALSE	369	2501	205	193	0	FALSE	ACH-000790
SHP77_LUNG	TIMM23--RP11-464F9.1	45	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	134	1	0.26	0.98	0.5203	0.0347	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SHP77_LUNG	0.26	0.98	0.555	TRUE	519	3926	326	965	0	FALSE	ACH-000790
SHP77_LUNG	TXNRD1--ASCL1	39	14	TXNRD1	11664	chr12:104682818:+	ASCL1	36277	chr12:103353140:+	ONLY_REF_SPLICE	YES	941	1719	0.05	0.03	0.4509	0.1619	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,ASCL1->Oncogene{Bushman},achaete-scute_family_bHLH_transcription_factor_1,chr12:103351464-103354294:+	SHP77_LUNG	0.03	0.05	0.6128	TRUE	0	0	0	1	0	FALSE	ACH-000790
SHP77_LUNG	RP11-680G10.1--GSE1	38	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	24	1	0.65	0.4394	0.0809	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SHP77_LUNG	0.65	1	0.5203	TRUE	458	1351	185	561	0	FALSE	ACH-000790
SHP77_LUNG	FAM73A--COL4A1	34	12	FAM73A	6125	chr1:78272786:+	COL4A1	67532	chr13:110801775:-	INCL_NON_REF_SPLICE	YES	13	4	0.78	0.92	0.3931	0.1388	FAM73A->chr1:78245309-78344106:+,family_with_sequence_similarity_73_member_A,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	SHP77_LUNG	0.78	0.92	0.5319	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	PPP6R3--ME2	34	1	PPP6R3	1110	chr11:68228295:+	ME2	40635	chr18:48422179:+	ONLY_REF_SPLICE	YES	18	58	0.66	0.38	0.3931	0.0116	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,ME2->chr18:48405419-48474691:+,malic_enzyme_2	SHP77_LUNG	0.38	0.66	0.4047	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	RP11-507B12.1--RP11-507B12.2	31	0	RP11-507B12.1	1057	chr15:62007314:-	RP11-507B12.2	7470	chr15:61882202:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3584	0	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	SHP77_LUNG	1	1	0.3584	FALSE	0	23	0	4	0	FALSE	ACH-000790
SHP77_LUNG	RP11-680G10.1--GSE1	29	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	166	1	0.16	0.3353	0.0231	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SHP77_LUNG	0.16	1	0.3584	TRUE	465	1949	224	605	0	FALSE	ACH-000790
SHP77_LUNG	MT-TA--MT-TC	28	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3238	0.0347	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SHP77_LUNG	1	1	0.3585	FALSE	462	80	0	856	0	FALSE	ACH-000790
SHP77_LUNG	WI2-1896O14.1--RP11-353N4.1	11	70	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	5570	chr1:149591759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1272	0.8094	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	SHP77_LUNG	1	1	0.9366	TRUE	361	258	24	38	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND6--MT-TE	27	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3122	0.0347	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SHP77_LUNG	1	1	0.3469	FALSE	499	1288	110	792	0	FALSE	ACH-000790
SHP77_LUNG	C15orf57--CBX3	22	20	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	31	28	0.58	0.6	0.2544	0.2313	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SHP77_LUNG	0.58	0.6	0.4857	TRUE	267	562	48	632	0	FALSE	ACH-000790
SHP77_LUNG	RP11-408A13.2--NFIB	22	8	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	14	1	0.68	0.2544	0.0925	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	SHP77_LUNG	0.68	1	0.3469	TRUE	0	14	0	20	14	FALSE	ACH-000790
SHP77_LUNG	RP11-123O10.4--GRIP1	19	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.2197	0.0809	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SHP77_LUNG	0.96	1	0.3006	FALSE	416	2512	207	587	0	FALSE	ACH-000790
SHP77_LUNG	TXNRD1--ASCL1	19	0	TXNRD1	10019	chr12:104680887:+	ASCL1	36277	chr12:103353140:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2197	0	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,ASCL1->Oncogene{Bushman},achaete-scute_family_bHLH_transcription_factor_1,chr12:103351464-103354294:+	SHP77_LUNG	1	1	0.2197	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	HSP90AB1--MT-RNR2	16	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3125	0	0.01	1	0.185	0.0231	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SHP77_LUNG	0.01	1	0.2081	FALSE	13	9	0	364	0	FALSE	ACH-000790
SHP77_LUNG	MT-TA--MT-TN	7	37	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0809	0.4278	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SHP77_LUNG	1	1	0.5087	FALSE	369	2501	205	193	0	FALSE	ACH-000790
SHP77_LUNG	AUTS2--TNRC18	15	2	AUTS2	2044	chr7:69064948:+	TNRC18	42678	chr7:5434226:-	ONLY_REF_SPLICE	YES	3	7	0.85	0.71	0.1734	0.0231	AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+,TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18	SHP77_LUNG	0.71	0.85	0.1965	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	MT-TA--MT-TN	3	48	MT-TA	1059	chrM:5597:-	MT-TN	4015	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0.555	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SHP77_LUNG	1	1	0.5897	FALSE	369	2501	205	193	0	FALSE	ACH-000790
SHP77_LUNG	LINC01014--KCNMB2	14	3	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	5	3	0.77	0.85	0.1619	0.0347	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	SHP77_LUNG	0.77	0.85	0.1966	FALSE	12	33	18	33	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND6--MT-TE	13	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1503	0.0463	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SHP77_LUNG	1	1	0.1966	FALSE	499	1288	110	792	0	FALSE	ACH-000790
SHP77_LUNG	RP11-319G9.5--WWOX	12	6	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	67	1	0.21	0.1388	0.0694	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	SHP77_LUNG	0.21	1	0.2082	FALSE	154	425	28	76	0	FALSE	ACH-000790
SHP77_LUNG	MT-ATP6--MT-CO2	11	7	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	41	1	0.31	0.95	0.1272	0.0809	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SHP77_LUNG	0.31	0.95	0.2081	FALSE	59	21	0	114	0	FALSE	ACH-000790
SHP77_LUNG	CLEC16A--RP11-368J21.3	1	46	CLEC16A	8584	chr16:11071256:+	RP11-368J21.3	46851	chr16:22572325:+	ONLY_REF_SPLICE	YES	164	0	0.22	1	0.0116	0.5319	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,RP11-368J21.3->chr16:22557019-22588186:+	SHP77_LUNG	0.22	1	0.5435	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	CTC-499J9.1--ASH1L	12	2	CTC-499J9.1	1076	chr5:110638190:-	ASH1L	19023	chr1:155385714:-	INCL_NON_REF_SPLICE	YES	4	38	0.78	0.27	0.1388	0.0231	CTC-499J9.1->chr5:110613215-110638265:-,ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-	SHP77_LUNG	0.27	0.78	0.1619	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	12	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	11405	4	0	0.76	0.1388	0.0116	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	0	0.76	0.1504	FALSE	230	193	14	283	0	FALSE	ACH-000790
SHP77_LUNG	MT-TA--MT-TN	3	36	MT-TA	1055	chrM:5601:-	MT-TN	3986	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0347	0.4163	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SHP77_LUNG	1	1	0.451	FALSE	369	2501	205	193	0	FALSE	ACH-000790
SHP77_LUNG	RRP36--RPL7L1	11	4	RRP36	5732	chr6:42996928:+	RPL7L1	14978	chr6:42851189:+	ONLY_REF_SPLICE	YES	308	208	0.05	0.07	0.1272	0.0463	RRP36->chr6:42989383-43001894:+,ribosomal_RNA_processing_36,RPL7L1->chr6:42847356-42857663:+,ribosomal_protein_L7_like_1	SHP77_LUNG	0.05	0.07	0.1735	TRUE	0	0	0	1	0	FALSE	ACH-000790
SHP77_LUNG	MT-TA--MT-TN	6	23	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0694	0.2659	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SHP77_LUNG	1	1	0.3353	FALSE	369	2501	205	193	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	9	9	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2326	81	0.01	0.18	0.1041	0.1041	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	0.01	0.18	0.2082	FALSE	216	209	16	281	0	FALSE	ACH-000790
SHP77_LUNG	SYTL3--TULP4	11	0	SYTL3	2155	chr6:159072874:+	TULP4	26499	chr6:158834097:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1272	0	SYTL3->chr6:159071046-159185908:+,synaptotagmin_like_3,TULP4->chr6:158733692-158932860:+,tubby_like_protein_4	SHP77_LUNG	1	1	0.1272	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	C15orf57--CBX3	8	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	29	32	0.4	0.37	0.0925	0.1272	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SHP77_LUNG	0.37	0.4	0.2197	TRUE	267	562	48	632	0	FALSE	ACH-000790
SHP77_LUNG	MT-ATP6--MT-CO2	9	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	45	2	0.25	0.88	0.1041	0.0694	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SHP77_LUNG	0.25	0.88	0.1735	FALSE	59	21	0	114	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND6--MT-TE	7	14	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.0809	0.1619	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SHP77_LUNG	0.91	1	0.2428	FALSE	499	1288	110	792	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND6--MT-TE	5	20	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0578	0.2313	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SHP77_LUNG	0.93	1	0.2891	FALSE	499	1288	110	792	0	FALSE	ACH-000790
SHP77_LUNG	LINC01014--KCNMB2	9	3	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	5	3	0.71	0.8	0.1041	0.0347	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	SHP77_LUNG	0.71	0.8	0.1388	FALSE	11	60	26	37	0	FALSE	ACH-000790
SHP77_LUNG	MT-TA--MT-TC	9	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1041	0.0347	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SHP77_LUNG	1	1	0.1388	FALSE	462	80	0	856	0	FALSE	ACH-000790
SHP77_LUNG	CLEC16A--RP11-368J21.3	1	33	CLEC16A	10752	chr16:11076848:+	RP11-368J21.3	48007	chr16:22579384:+	ONLY_REF_SPLICE	YES	34	36	0.5	0.49	0.0116	0.3816	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,RP11-368J21.3->chr16:22557019-22588186:+	SHP77_LUNG	0.49	0.5	0.3932	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	7	9	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13332	81	0	0.16	0.0809	0.1041	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	0	0.16	0.185	FALSE	231	217	16	283	0	FALSE	ACH-000790
SHP77_LUNG	RRP36--RPL7L1	9	1	RRP36	4633	chr6:42995215:+	RPL7L1	14978	chr6:42851189:+	ONLY_REF_SPLICE	YES	402	208	0.02	0.05	0.1041	0.0116	RRP36->chr6:42989383-43001894:+,ribosomal_RNA_processing_36,RPL7L1->chr6:42847356-42857663:+,ribosomal_protein_L7_like_1	SHP77_LUNG	0.02	0.05	0.1157	TRUE	0	0	0	1	0	FALSE	ACH-000790
SHP77_LUNG	JAKMIP3--LRRC27	8	4	JAKMIP3	1273	chr10:133918447:+	LRRC27	37748	chr10:134158002:+	ONLY_REF_SPLICE	YES	0	13	1	0.48	0.0925	0.0463	JAKMIP3->Janus_kinase_and_microtubule_interacting_protein_3,chr10:133918175-133998313:+,LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27	SHP77_LUNG	0.48	1	0.1388	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	RAB4B--CYP2T2P	7	8	RAB4B	7028	chr19:41292883:+	CYP2T2P	13653	chr19:41316400:-	ONLY_REF_SPLICE	YES	114	2	0.12	0.88	0.0809	0.0925	LOCAL_INVERSION:+:-:[11583],RAB4B->RAB4B,_member_RAS_oncogene_family,chr19:41284121-41302847:+,CYP2T2P->chr19:41314430-41317295:-	SHP77_LUNG	0.12	0.88	0.1734	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	CALM3--MT-ND4L	7	7	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1235	0	0.01	1	0.0809	0.0809	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SHP77_LUNG	0.01	1	0.1618	FALSE	1	1	0	107	0	FALSE	ACH-000790
SHP77_LUNG	HSP90AB1--MT-RNR2	8	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3118	0	0	1	0.0925	0.0231	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SHP77_LUNG	0	1	0.1156	FALSE	13	9	0	364	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	6	8	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	13875	6	0	0.7	0.0694	0.0925	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	0	0.7	0.1619	FALSE	231	217	16	283	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND6--MT-TE	5	12	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0.1388	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SHP77_LUNG	1	1	0.1966	FALSE	499	1288	110	792	0	FALSE	ACH-000790
SHP77_LUNG	SNX29--CIITA	7	3	SNX29	17158	chr16:12172772:+	CIITA	43524	chr16:10989139:+	ONLY_REF_SPLICE	YES	17	0	0.37	1	0.0809	0.0347	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator	SHP77_LUNG	0.37	1	0.1156	TRUE	0	1	0	1	1	TRUE	ACH-000790
SHP77_LUNG	C16orf45--RP11-429K17.1	7	2	C16orf45	1465	chr16:15528616:+	RP11-429K17.1	21515	chr16:20401930:+	ONLY_REF_SPLICE	YES	33	0	0.21	1	0.0809	0.0231	C16orf45->chr16:15528152-15718885:+,chromosome_16_open_reading_frame_45,RP11-429K17.1->chr16:20397279-20402486:+	SHP77_LUNG	0.21	1	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	MT-TA--MT-TN	5	9	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0.1041	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SHP77_LUNG	1	1	0.1619	FALSE	369	2501	205	193	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND3--MT-ATP8	7	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0809	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	1	1	0.0809	FALSE	351	233	23	137	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	4	12	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	12770	0	0	1	0.0463	0.1388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	0	1	0.1851	FALSE	231	217	16	283	0	FALSE	ACH-000790
SHP77_LUNG	MT-TA--MT-TN	7	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0809	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SHP77_LUNG	1	1	0.0809	FALSE	369	2501	205	193	0	FALSE	ACH-000790
SHP77_LUNG	MT-ATP6--MT-CO2	6	3	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	37	1	0.2	0.9	0.0694	0.0347	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SHP77_LUNG	0.2	0.9	0.1041	FALSE	59	21	0	114	0	FALSE	ACH-000790
SHP77_LUNG	LINC00299--AC007464.1	6	1	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0694	0.0116	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	SHP77_LUNG	0.78	1	0.081	TRUE	67	49	0	25	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	4	9	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12546	81	0	0.14	0.0463	0.1041	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	0	0.14	0.1504	FALSE	231	217	16	283	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	6	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13329	6	0	0.54	0.0694	0.0116	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	0	0.54	0.081	FALSE	231	205	14	283	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-RNR2	6	1	MT-ND4	1471	chrM:11230:+	MT-RNR2	5423	chrM:1715:+	INCL_NON_REF_SPLICE	YES	14855	0	0	1	0.0694	0.0116	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SHP77_LUNG	0	1	0.081	FALSE	13	19	3	21	0	FALSE	ACH-000790
SHP77_LUNG	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0694	0.0116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SHP77_LUNG	1	1	0.081	FALSE	462	80	0	856	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	5	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	14943	0	0	1	0.0578	0.0463	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	0	1	0.1041	FALSE	231	217	16	283	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	6	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0694	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	1	1	0.0694	FALSE	230	193	14	283	0	FALSE	ACH-000790
SHP77_LUNG	MT-TA--MT-TN	6	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0694	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SHP77_LUNG	1	1	0.0694	FALSE	369	2501	205	193	0	FALSE	ACH-000790
SHP77_LUNG	RP4-565E6.1--HYDIN	5	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	12	1	0.43	0.0578	0.0463	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SHP77_LUNG	0.43	1	0.1041	TRUE	456	1387	91	133	0	FALSE	ACH-000790
SHP77_LUNG	MT-ATP6--MT-CO2	4	7	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	45	2	0.2	0.85	0.0463	0.0809	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SHP77_LUNG	0.2	0.85	0.1272	FALSE	59	21	0	114	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	3	11	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	NO	13587	0	0	1	0.0347	0.1272	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	0	1	0.1619	FALSE	231	217	16	283	0	FALSE	ACH-000790
SHP77_LUNG	MT-TA--MT-TC	5	3	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0.0347	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SHP77_LUNG	1	1	0.0925	FALSE	462	80	0	856	0	FALSE	ACH-000790
SHP77_LUNG	SLC39A11--ITGA2B	5	3	SLC39A11	12214	chr17:70845773:-	ITGA2B	36058	chr17:42455158:-	ONLY_REF_SPLICE	YES	19	3	0.3	0.73	0.0578	0.0347	SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,ITGA2B->chr17:42449548-42466873:-,integrin_subunit_alpha_2b	SHP77_LUNG	0.3	0.73	0.0925	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	RRP36--RPL7L1	4	6	RRP36	7501	chr6:43001251:+	RPL7L1	13481	chr6:42849692:+	INCL_NON_REF_SPLICE	YES	16	223	0.38	0.04	0.0463	0.0694	RRP36->chr6:42989383-43001894:+,ribosomal_RNA_processing_36,RPL7L1->chr6:42847356-42857663:+,ribosomal_protein_L7_like_1	SHP77_LUNG	0.04	0.38	0.1157	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	B3GALNT2--LYST	5	1	B3GALNT2	10579	chr1:235628953:-	LYST	24244	chr1:235996967:-	ONLY_REF_SPLICE	YES	24	1	0.2	0.86	0.0578	0.0116	B3GALNT2->beta-1,3-N-acetylgalactosaminyltransferase_2,chr1:235613238-235667781:-,LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator	SHP77_LUNG	0.2	0.86	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	FARS2--RP3-380B8.4	5	1	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	YES	143	0	0.04	1	0.0578	0.0116	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	SHP77_LUNG	0.04	1	0.0694	FALSE	27	82	4	18	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-RNR2	5	1	MT-ND4	1479	chrM:11238:+	MT-RNR2	5959	chrM:2251:+	INCL_NON_REF_SPLICE	YES	15020	5816	0	0	0.0578	0.0116	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SHP77_LUNG	0	0	0.0694	FALSE	13	19	3	21	0	FALSE	ACH-000790
SHP77_LUNG	SIPA1L3--RP11-744N12.3	5	1	SIPA1L3	26589	chr19:38673380:+	RP11-744N12.3	45433	chr11:128499668:-	ONLY_REF_SPLICE	YES	107	0	0.05	1	0.0578	0.0116	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,RP11-744N12.3->chr11:128499548-128556817:-	SHP77_LUNG	0.05	1	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	CALCA--RPS28	5	0	CALCA	1049	chr11:14993852:-	RPS28	9980	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	CALCA->Oncogene{Bushman},calcitonin_related_polypeptide_alpha,chr11:14988214-14993900:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SHP77_LUNG	1	1	0.0578	TRUE	0	0	0	2	0	TRUE	ACH-000790
SHP77_LUNG	DSCR4--KCNJ6	4	4	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	9	20	0.47	0.29	0.0463	0.0463	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	SHP77_LUNG	0.29	0.47	0.0926	FALSE	0	24	0	27	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	1	1	0.0578	FALSE	230	198	14	283	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	4	4	MT-ND4	1311	chrM:11070:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	15548	0	0	1	0.0463	0.0463	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	0	1	0.0926	FALSE	231	205	14	283	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	4	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	14943	0	0	1	0.0463	0.0463	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	0	1	0.0926	FALSE	231	217	16	283	0	FALSE	ACH-000790
SHP77_LUNG	NDUFA4--PHF14	5	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0578	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SHP77_LUNG	1	1	0.0578	TRUE	19	32	3	60	0	FALSE	ACH-000790
SHP77_LUNG	SMARCC1--KRBOX1-AS1	4	4	SMARCC1	28887	chr3:47663697:-	KRBOX1-AS1	39328	chr3:42977782:-	INCL_NON_REF_SPLICE	YES	227	2	0.03	0.8	0.0463	0.0463	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,KRBOX1-AS1->KRBOX1_antisense_RNA_1,chr3:42975744-42978277:-	SHP77_LUNG	0.03	0.8	0.0926	TRUE	0	0	0	1	0	FALSE	ACH-000790
SHP77_LUNG	MT-ATP6--MT-CO2	3	7	MT-ATP6	1620	chrM:9146:+	MT-CO2	4912	chrM:7816:+	INCL_NON_REF_SPLICE	YES	0	7	1	0.59	0.0347	0.0809	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SHP77_LUNG	0.59	1	0.1156	FALSE	59	21	0	114	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	2022	chrM:11781:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	12366	936	0	0.01	0.0347	0.0809	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	0	0.01	0.1156	FALSE	231	215	16	283	0	FALSE	ACH-000790
SHP77_LUNG	RP11-108K3.1--GLDN	4	2	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	0	4	1	0.6	0.0463	0.0231	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SHP77_LUNG	0.6	1	0.0694	FALSE	0	14	0	30	0	FALSE	ACH-000790
SHP77_LUNG	VWDE--PHF14	4	2	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	25	78	0.19	0.07	0.0463	0.0231	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SHP77_LUNG	0.07	0.19	0.0694	TRUE	0	6	0	17	2	TRUE	ACH-000790
SHP77_LUNG	DSCR3--TTC3	4	1	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	37	89	0.12	0.05	0.0463	0.0116	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	SHP77_LUNG	0.05	0.12	0.0579	TRUE	0	9	0	44	1	FALSE	ACH-000790
SHP77_LUNG	CLEC16A--RP11-368J21.3	1	12	CLEC16A	7409	chr16:11066918:+	RP11-368J21.3	46851	chr16:22572325:+	ONLY_REF_SPLICE	YES	185	0	0.07	1	0.0116	0.1388	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,RP11-368J21.3->chr16:22557019-22588186:+	SHP77_LUNG	0.07	1	0.1504	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	15611	0	0	1	0.0347	0.0463	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	0	1	0.081	FALSE	231	217	16	283	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	15044	0	0	1	0.0347	0.0463	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	0	1	0.081	FALSE	231	217	16	283	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-RNR2	4	0	MT-ND4	1209	chrM:10968:+	MT-RNR2	5415	chrM:1707:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SHP77_LUNG	1	1	0.0463	FALSE	13	19	3	21	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SHP77_LUNG	1	1	0.0463	FALSE	499	1288	110	792	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SHP77_LUNG	1	1	0.0463	FALSE	499	1288	110	792	0	FALSE	ACH-000790
SHP77_LUNG	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0.0463	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SHP77_LUNG	1	1	0.081	FALSE	462	80	0	856	0	FALSE	ACH-000790
SHP77_LUNG	RP11-120D5.1--MID1	4	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0463	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SHP77_LUNG	1	1	0.0463	FALSE	16	356	14	466	0	FALSE	ACH-000790
SHP77_LUNG	SNX8--BRAT1	4	0	SNX8	3400	chr7:2353963:-	BRAT1	31805	chr7:2579522:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0463	0	SNX8->chr7:2291405-2393953:-,sorting_nexin_8,BRAT1->BRCA1_associated_ATM_activator_1,Oncogene{Bushman},chr7:2577511-2595361:-	SHP77_LUNG	1	1	0.0463	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	RP11-507B12.1--RP11-507B12.2	3	3	RP11-507B12.1	3212	chr15:61931770:-	RP11-507B12.2	7470	chr15:61882202:-	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0347	0.0347	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	SHP77_LUNG	0.6	1	0.0694	FALSE	0	0	0	1	0	FALSE	ACH-000790
SHP77_LUNG	RP11-507B12.1--RP11-507B12.2	3	3	RP11-507B12.1	3212	chr15:61931770:-	RP11-507B12.2	6395	chr15:61927688:-	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0347	0.0347	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	SHP77_LUNG	0.6	1	0.0694	FALSE	0	0	0	1	0	FALSE	ACH-000790
SHP77_LUNG	MT-ATP6--MT-CO2	3	2	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	34	1	0.13	0.83	0.0347	0.0231	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SHP77_LUNG	0.13	0.83	0.0578	FALSE	59	21	0	114	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND1--MT-RNR2	3	2	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	22	0	0.19	1	0.0347	0.0231	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SHP77_LUNG	0.19	1	0.0578	FALSE	114	26	4	85	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND1--MT-RNR2	3	2	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	21	0	0.19	1	0.0347	0.0231	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SHP77_LUNG	0.19	1	0.0578	FALSE	114	26	4	85	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	15472	1473	0	0	0.0347	0.0231	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	0	0	0.0578	FALSE	231	205	14	283	0	FALSE	ACH-000790
SHP77_LUNG	RP11-507B12.1--RP11-507B12.2	3	2	RP11-507B12.1	2070	chr15:61945388:-	RP11-507B12.2	6395	chr15:61927688:-	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0347	0.0231	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	SHP77_LUNG	0.62	1	0.0578	FALSE	0	0	0	1	0	FALSE	ACH-000790
SHP77_LUNG	LINC00473--PDE10A	2	5	LINC00473	9097	chr6:166324296:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	20	0	0.26	1	0.0231	0.0578	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	SHP77_LUNG	0.26	1	0.0809	FALSE	2	5	0	11	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SHP77_LUNG	1	1	0.0347	FALSE	230	193	14	283	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SHP77_LUNG	1	1	0.0347	FALSE	499	1288	110	792	0	FALSE	ACH-000790
SHP77_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1014	chrM:14660:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SHP77_LUNG	1	1	0.0347	FALSE	499	1288	110	792	0	FALSE	ACH-000790
SHP77_LUNG	MT-TA--MT-TN	3	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SHP77_LUNG	1	1	0.0347	FALSE	369	2501	205	193	0	FALSE	ACH-000790
SHP77_LUNG	SF1--FUS	3	0	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	SHP77_LUNG	1	1	0.0347	TRUE	5	20	0	32	0	FALSE	ACH-000790
SHP77_LUNG	WI2-1896O14.1--RP11-353N4.1	3	0	WI2-1896O14.1	1077	chr1:144679893:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	SHP77_LUNG	1	1	0.0347	TRUE	211	14	4	3	0	FALSE	ACH-000790
SHP77_LUNG	RP11-123O10.4--GRIP1	1	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	2	1	0.8	0.0116	0.0809	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SHP77_LUNG	0.8	1	0.0925	FALSE	93	270	15	244	0	FALSE	ACH-000790
SHP77_LUNG	RP11-108K3.1--GLDN	2	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	3	1	0.57	0.0231	0.0231	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SHP77_LUNG	0.57	1	0.0462	FALSE	0	30	1	55	0	FALSE	ACH-000790
SHP77_LUNG	DCAF12--FAM214B	2	1	DCAF12	5509	chr9:34106432:-	FAM214B	21794	chr9:35108734:-	ONLY_REF_SPLICE	YES	86	9	0.03	0.25	0.0231	0.0116	DCAF12->DDB1_and_CUL4_associated_factor_12,chr9:34086385-34127397:-,FAM214B->chr9:35104109-35116338:-,family_with_sequence_similarity_214_member_B	SHP77_LUNG	0.03	0.25	0.0347	TRUE	0	0	0	1	0	FALSE	ACH-000790
SHP77_LUNG	RP11-108K3.1--GLDN	2	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	5	1	0.38	0.0231	0.0116	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SHP77_LUNG	0.38	1	0.0347	FALSE	1	20	0	46	0	FALSE	ACH-000790
SHP77_LUNG	RP11-108K3.1--GLDN	2	1	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	5	1	0.38	0.0231	0.0116	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SHP77_LUNG	0.38	1	0.0347	FALSE	0	14	0	30	0	FALSE	ACH-000790
SHP77_LUNG	RP11-307P5.1--SASH1	2	1	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	6	1	0.33	0.0231	0.0116	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SHP77_LUNG	0.33	1	0.0347	TRUE	0	2	0	37	2	FALSE	ACH-000790
SHP77_LUNG	RP11-307P5.1--SASH1	2	1	RP11-307P5.1	3288	chr6:148013623:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	NO	8	6	0.27	0.33	0.0231	0.0116	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SHP77_LUNG	0.27	0.33	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	YWHAE--CRK	2	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	2662	122	0	0.02	0.0231	0.0116	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SHP77_LUNG	0	0.02	0.0347	FALSE	6	50	7	115	0	FALSE	ACH-000790
SHP77_LUNG	ADNP2--ZNF200	2	0	ADNP2	3112	chr18:77875533:+	ZNF200	15507	chr16:3285360:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	HGNC_GENEFAM,ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+,ZNF200->chr16:3272325-3286221:-,zinc_finger_protein_200	SHP77_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	C17orf76-AS1--PSMG3	2	0	C17orf76-AS1	1593	chr17:16342728:+	PSMG3	14848	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	C17orf76-AS1->chr17:16342136-16381992:+,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	SHP77_LUNG	1	1	0.0231	TRUE	0	0	0	2	0	TRUE	ACH-000790
SHP77_LUNG	CMTM8--CMTM7	2	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	SHP77_LUNG	1	1	0.0231	FALSE	118	557	29	88	0	FALSE	ACH-000790
SHP77_LUNG	DSCR4--KCNJ6	1	4	DSCR4	9495	chr21:39325124:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	2	20	0.71	0.2	0.0116	0.0463	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	SHP77_LUNG	0.2	0.71	0.0579	FALSE	0	0	0	2	0	FALSE	ACH-000790
SHP77_LUNG	FBRSL1--NOC4L	2	0	FBRSL1	10358	chr12:133104574:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	SHP77_LUNG	1	1	0.0231	TRUE	1	3	0	2	0	FALSE	ACH-000790
SHP77_LUNG	FBXW10--TRIM16L	2	0	FBXW10	1737	chr17:18648062:+	TRIM16L	31721	chr17:18638190:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PROTCLUST,LOCAL_REARRANGEMENT:+:[7895],FBXW10->F-box_and_WD_repeat_domain_containing_10,chr17:18647326-18682662:+,TRIM16L->chr17:18601311-18639431:+,tripartite_motif_containing_16-like	SHP77_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	GIGYF2--DIS3L2	2	0	GIGYF2	1094	chr2:233562102:+	DIS3L2	81895	chr2:233194523:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,DIS3L2->DIS3_like_3'-5'_exoribonuclease_2,chr2:232825955-233209060:+	SHP77_LUNG	1	1	0.0231	TRUE	0	1	0	1	1	TRUE	ACH-000790
SHP77_LUNG	LINC00473--PDE10A	1	4	LINC00473	1520	chr6:166401017:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	235	0	0.02	1	0.0116	0.0463	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	SHP77_LUNG	0.02	1	0.0579	FALSE	6	13	0	15	0	FALSE	ACH-000790
SHP77_LUNG	MVB12B--PBX3	2	0	MVB12B	12149	chr9:129184227:+	PBX3	32882	chr9:128691934:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	MVB12B->chr9:129089128-129269320:+,multivesicular_body_subunit_12B,PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3	SHP77_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	RAB40C--TMEM8A	2	0	RAB40C	2077	chr16:640433:+	TMEM8A	17482	chr16:427848:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5]},GTEx_v2:{count=3;pct=0.03%;dist=Pancreas=1,Lung=1,Brain_-_Cerebellum=1},RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+,TMEM8A->chr16:420773-437113:-,transmembrane_protein_8A	SHP77_LUNG	1	1	0.0231	TRUE	6	8	0	5	0	FALSE	ACH-000790
SHP77_LUNG	RP11-120D5.1--MID1	2	0	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SHP77_LUNG	1	1	0.0231	FALSE	2	31	0	60	0	FALSE	ACH-000790
SHP77_LUNG	RP11-120D5.1--MID1	2	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SHP77_LUNG	1	1	0.0231	FALSE	0	48	1	163	0	FALSE	ACH-000790
SHP77_LUNG	RP11-507B12.1--RP11-507B12.2	2	0	RP11-507B12.1	1057	chr15:62007314:-	RP11-507B12.2	8558	chr15:61799439:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	SHP77_LUNG	1	1	0.0231	FALSE	0	11	0	4	0	FALSE	ACH-000790
SHP77_LUNG	RRP36--RPL7L1	2	0	RRP36	3297	chr6:42993879:+	RPL7L1	14978	chr6:42851189:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	RRP36->chr6:42989383-43001894:+,ribosomal_RNA_processing_36,RPL7L1->chr6:42847356-42857663:+,ribosomal_protein_L7_like_1	SHP77_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	SAMD3--TMEM200A	2	0	SAMD3	1306	chr6:130686265:-	TMEM200A	32603	chr6:130761552:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},LOCAL_INVERSION:-:+:[309],SAMD3->chr6:130465460-130686570:-,sterile_alpha_motif_domain_containing_3,TMEM200A->chr6:130686879-130764208:+,transmembrane_protein_200A	SHP77_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	WTAPP1--RUVBL1	2	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	SHP77_LUNG	1	1	0.0231	TRUE	9	252	6	66	0	FALSE	ACH-000790
SHP77_LUNG	SLC39A11--ITGA2B	1	3	SLC39A11	12214	chr17:70845773:-	ITGA2B	35339	chr17:42455877:-	ONLY_REF_SPLICE	YES	19	1	0.17	0.8	0.0116	0.0347	SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,ITGA2B->chr17:42449548-42466873:-,integrin_subunit_alpha_2b	SHP77_LUNG	0.17	0.8	0.0463	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	SMARCC1--KRBOX1-AS1	1	3	SMARCC1	28887	chr3:47663697:-	KRBOX1-AS1	40262	chr3:42976848:-	ONLY_REF_SPLICE	YES	227	0	0.02	1	0.0116	0.0347	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,KRBOX1-AS1->KRBOX1_antisense_RNA_1,chr3:42975744-42978277:-	SHP77_LUNG	0.02	1	0.0463	TRUE	0	0	0	1	0	FALSE	ACH-000790
SHP77_LUNG	FGF14-IT1--FGF14	1	2	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	80	1	0.04	0.0116	0.0231	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	SHP77_LUNG	0.04	1	0.0347	TRUE	71	201	23	28	0	FALSE	ACH-000790
SHP77_LUNG	RP11-507B12.1--RP11-507B12.2	1	2	RP11-507B12.1	2070	chr15:61945388:-	RP11-507B12.2	8558	chr15:61799439:-	ONLY_REF_SPLICE	YES	3	4	0.5	0.43	0.0116	0.0231	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	SHP77_LUNG	0.43	0.5	0.0347	FALSE	0	2	0	1	0	FALSE	ACH-000790
SHP77_LUNG	RP11-507B12.1--RP11-507B12.2	1	2	RP11-507B12.1	2070	chr15:61945388:-	RP11-507B12.2	7470	chr15:61882202:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0116	0.0231	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	SHP77_LUNG	0.5	1	0.0347	FALSE	0	6	0	1	0	FALSE	ACH-000790
SHP77_LUNG	TBCD--FOXK2	1	2	TBCD	14448	chr17:80772810:+	FOXK2	57603	chr17:80521230:+	ONLY_REF_SPLICE	NO	291	43	0.01	0.07	0.0116	0.0231	TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	SHP77_LUNG	0.01	0.07	0.0347	FALSE	0	0	0	1	0	FALSE	ACH-000790
SHP77_LUNG	AP001432.14--DSCR3	1	1	AP001432.14	1179	chr21:38593898:+	DSCR3	9547	chr21:38612940:-	ONLY_REF_SPLICE	YES	9	49	0.18	0.04	0.0116	0.0116	NEIGHBORS_OVERLAP:+:-:[14324],AP001432.14->chr21:38593720-38610045:+,DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-	SHP77_LUNG	0.04	0.18	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000790
SHP77_LUNG	FAM120B--PSMB1	1	1	FAM120B	3590	chr6:170615930:+	PSMB1	23731	chr6:170858201:-	ONLY_REF_SPLICE	YES	9	1027	0.18	0	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	SHP77_LUNG	0	0.18	0.0232	FALSE	0	2	0	5	0	FALSE	ACH-000790
SHP77_LUNG	FBRSL1--NOC4L	1	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	68	75	0.03	0.03	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	SHP77_LUNG	0.03	0.03	0.0232	TRUE	3	48	0	26	0	FALSE	ACH-000790
SHP77_LUNG	GCA--PRPF40A	1	1	GCA	2744	chr2:163200785:+	PRPF40A	17209	chr2:153572640:-	ONLY_REF_SPLICE	NO	88	43	0.02	0.04	0.0116	0.0116	GCA->chr2:163175350-163228105:+,grancalcin,PRPF40A->chr2:153508107-153574511:-,pre-mRNA_processing_factor_40_homolog_A	SHP77_LUNG	0.02	0.04	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000790
SHP77_LUNG	KIF1A--GRAMD4	1	1	KIF1A	37867	chr2:241674136:-	GRAMD4	59462	chr22:47022648:+	ONLY_REF_SPLICE	NO	370	2	0.01	0.5	0.0116	0.0116	KIF1A->chr2:241653181-241759725:-,kinesin_family_member_1A,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	SHP77_LUNG	0.01	0.5	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000790
SHP77_LUNG	LINC01014--RP11-385J1.2	1	1	LINC01014	1175	chr3:178137163:+	RP11-385J1.2	11062	chr3:178467024:-	ONLY_REF_SPLICE	NO	5	111	0.29	0.02	0.0116	0.0116	LOCAL_INVERSION:+:-:[69196],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,RP11-385J1.2->chr3:178244293-178578193:-	SHP77_LUNG	0.02	0.29	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000790
SHP77_LUNG	NAV1--PKP1	1	1	NAV1	4638	chr1:201618553:+	PKP1	49346	chr1:201263070:+	ONLY_REF_SPLICE	YES	24	0	0.08	1	0.0116	0.0116	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,PKP1->chr1:201252580-201302121:+,plakophilin_1	SHP77_LUNG	0.08	1	0.0232	TRUE	0	0	0	2	0	TRUE	ACH-000790
SHP77_LUNG	NOC4L--FBRSL1	1	1	NOC4L	4659	chr12:132632651:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	79	32	0.02	0.06	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	SHP77_LUNG	0.02	0.06	0.0232	TRUE	4	9	0	12	0	FALSE	ACH-000790
SHP77_LUNG	NOC4L--FBRSL1	1	1	NOC4L	2218	chr12:132630210:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	94	32	0.02	0.06	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	SHP77_LUNG	0.02	0.06	0.0232	TRUE	0	1	0	10	0	FALSE	ACH-000790
SHP77_LUNG	RAB3GAP1--MGAT5	1	1	RAB3GAP1	2297	chr2:135815656:+	MGAT5	38402	chr2:135075100:+	ONLY_REF_SPLICE	YES	53	42	0.04	0.05	0.0116	0.0116	RAB3GAP1->RAB3_GTPase_activating_protein_catalytic_subunit_1,chr2:135809835-135933964:+,MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase	SHP77_LUNG	0.04	0.05	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000790
SHP77_LUNG	TMEM59L--SSBP4	1	1	TMEM59L	6720	chr19:18729082:+	SSBP4	16641	chr19:18541651:+	ONLY_REF_SPLICE	YES	23	97	0.08	0.02	0.0116	0.0116	TMEM59L->chr19:18718240-18731849:+,transmembrane_protein_59_like,SSBP4->Oncogene{Bushman},chr19:18529674-18545372:+,single_stranded_DNA_binding_protein_4	SHP77_LUNG	0.02	0.08	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000790
SHP77_LUNG	TRAPPC9--KCNK9	1	1	TRAPPC9	55504	chr8:140898123:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	NO	117	26	0.02	0.07	0.0116	0.0116	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	SHP77_LUNG	0.02	0.07	0.0232	FALSE	7	13	2	16	0	FALSE	ACH-000790
SHP77_LUNG	TRPC1--STAG1	1	1	TRPC1	1658	chr3:142443573:+	STAG1	47205	chr3:136096594:-	ONLY_REF_SPLICE	YES	9	36	0.18	0.05	0.0116	0.0116	TRPC1->chr3:142442916-142526730:+,transient_receptor_potential_cation_channel_subfamily_C_member_1,STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1	SHP77_LUNG	0.05	0.18	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000790
SHP77_LUNG	ZNF670--SMYD3	1	1	ZNF670	1218	chr1:247241896:-	SMYD3	40931	chr1:246027188:-	ONLY_REF_SPLICE	NO	23	484	0.08	0	0.0116	0.0116	ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	SHP77_LUNG	0	0.08	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000790
OVISE_OVARY	RASA2--HSP90AB1	562	338	RASA2	4487	chr3:141248644:+	HSP90AB1	33430	chr6:44216367:+	ONLY_REF_SPLICE	YES	27	172	0.97	0.84	5.2119	3.1346	{Klijn_CCL:Ovary=1},RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1	OVISE_OVARY	0.84	0.97	8.3465	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	JUP--NT5C3B	112	69	JUP	5265	chr17:39927899:-	NT5C3B	29691	chr17:39983878:-	ONLY_REF_SPLICE	YES	1360	338	0.12	0.35	1.0387	0.6399	LOCAL_REARRANGEMENT:-:[38152],JUP->chr17:39775692-39943183:-,junction_plakoglobin,NT5C3B->5'-nucleotidase,_cytosolic_IIIB,chr17:39981335-39992523:-	OVISE_OVARY	0.12	0.35	1.6786	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	BRE--NSD1	105	71	BRE	5581	chr2:28152775:+	NSD1	56080	chr5:176718955:+	ONLY_REF_SPLICE	YES	433	133	0.29	0.57	0.9738	0.6584	BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+,NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1	OVISE_OVARY	0.29	0.57	1.6322	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-TA--MT-TN	119	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1036	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVISE_OVARY	1	1	1.1036	FALSE	369	2501	205	193	0	FALSE	ACH-000527
OVISE_OVARY	CCDC12--IQSEC1	104	40	CCDC12	6415	chr3:46982488:-	IQSEC1	20548	chr3:12983365:-	ONLY_REF_SPLICE	YES	282	5	0.34	0.97	0.9645	0.371	{Klijn_CCL:Ovary=1},CCDC12->chr3:46963216-47023500:-,coiled-coil_domain_containing_12,IQSEC1->IQ_motif_and_Sec7_domain_1,chr3:12938719-13114617:-	OVISE_OVARY	0.34	0.97	1.3355	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	PRRG2--CCDC155	95	56	PRRG2	3582	chr19:50087209:+	CCDC155	15450	chr19:49897733:+	ONLY_REF_SPLICE	YES	24	13	0.86	0.92	0.881	0.5193	{Klijn_CCL:Ovary=1},PRRG2->chr19:50083903-50094272:+,proline_rich_and_Gla_domain_2,CCDC155->chr19:49891475-49921251:+,coiled-coil_domain_containing_155	OVISE_OVARY	0.86	0.92	1.4003	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	GCLM--ARHGAP29	74	48	GCLM	4154	chr1:94367141:-	ARHGAP29	46055	chr1:94620204:-	ONLY_REF_SPLICE	YES	98	1	0.55	0.99	0.6863	0.4451	GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit,ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-	OVISE_OVARY	0.55	0.99	1.1314	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	PKN1--ASH1L	67	54	PKN1	12706	chr19:14574965:+	ASH1L	35463	chr1:155349907:-	ONLY_REF_SPLICE	YES	399	51	0.23	0.7	0.6214	0.5008	{Klijn_CCL:Ovary=1},PKN1->chr19:14543865-14582679:+,protein_kinase_N1,ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-	OVISE_OVARY	0.23	0.7	1.1222	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	PLXDC1--TAF13	74	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6863	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	OVISE_OVARY	1	1	0.6863	TRUE	7	10	0	216	0	FALSE	ACH-000527
OVISE_OVARY	TIMM23B--LINC00843	65	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6028	0.2597	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OVISE_OVARY	1	1	0.8625	TRUE	508	994	45	981	0	FALSE	ACH-000527
OVISE_OVARY	ZC3H7B--L3MBTL2	55	54	ZC3H7B	20901	chr22:41745305:+	L3MBTL2	35086	chr22:41609897:+	ONLY_REF_SPLICE	YES	181	46	0.38	0.7	0.5101	0.5008	{Klijn_CCL:Lung=1,Ovary=1},LOCAL_REARRANGEMENT:+:[70251],ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,L3MBTL2->L3MBTL2_polycomb_repressive_complex_1_subunit,chr22:41601209-41627275:+	OVISE_OVARY	0.38	0.7	1.0109	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	CYB561--hsa-mir-6080	53	0	CYB561	1134	chr17:61523606:-	hsa-mir-6080	18144	chr17:62760666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4915	0	CYB561->chr17:61509665-61523739:-,cytochrome_b561,hsa-mir-6080->chr17:62745781-62778117:-	OVISE_OVARY	1	1	0.4915	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	46	21	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2874	0	0.02	1	0.4266	0.1948	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0.02	1	0.6214	FALSE	344	827	44	306	0	FALSE	ACH-000527
OVISE_OVARY	MT-TA--MT-TC	47	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4359	0.0371	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVISE_OVARY	1	1	0.473	FALSE	462	80	0	856	0	FALSE	ACH-000527
OVISE_OVARY	TIMM23--RP11-464F9.1	44	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	254	6	0.17	0.9	0.4081	0.0742	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OVISE_OVARY	0.17	0.9	0.4823	TRUE	519	3926	326	965	0	FALSE	ACH-000527
OVISE_OVARY	RASA2--HSP90AB1	6	159	RASA2	4487	chr3:141248644:+	HSP90AB1	34177	chr6:44217114:+	ONLY_REF_SPLICE	YES	27	7896	0.86	0.02	0.0556	1.4746	{Klijn_CCL:Ovary=1},RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1	OVISE_OVARY	0.02	0.86	1.5302	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	44	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19116	14	0	0.77	0.4081	0.0278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.77	0.4359	FALSE	230	198	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	42	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	18963	13	0	0.78	0.3895	0.0278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.78	0.4173	FALSE	230	193	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	42	0	MT-ATP6	1098	chrM:8624:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3895	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	1	1	0.3895	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND5--MT-ATP8	38	16	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.3524	0.1484	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0.95	1	0.5008	FALSE	43	37	8	105	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	4	146	MT-ND4	1937	chrM:11696:+	MT-ND4L	5386	chrM:10477:+	INCL_NON_REF_SPLICE	YES	25844	0	0.01	1	0.0371	1.354	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0.01	1	1.3911	FALSE	344	827	44	306	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	6	134	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	2039	0	0.06	1	0.0556	1.2427	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0.06	1	1.2983	FALSE	344	827	44	306	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	5	134	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	2203	0	0.06	1	0.0464	1.2427	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0.06	1	1.2891	FALSE	344	827	44	306	0	FALSE	ACH-000527
OVISE_OVARY	RP3-510D11.1--PTBP1	36	9	RP3-510D11.1	3450	chr1:9242066:-	PTBP1	9820	chr19:803561:+	ONLY_REF_SPLICE	YES	0	219	1	0.17	0.3339	0.0835	RP3-510D11.1->chr1:9242066-9262678:-,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	OVISE_OVARY	0.17	1	0.4174	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	5	128	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	34	0	0.8	1	0.0464	1.1871	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0.8	1	1.2335	FALSE	344	826	44	306	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	4	131	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	72	1	0.65	0.99	0.0371	1.2149	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0.65	0.99	1.252	FALSE	344	826	44	306	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	3	132	MT-ND4	1451	chrM:11210:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1400	0	0.09	1	0.0278	1.2242	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0.09	1	1.252	FALSE	344	827	44	306	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	3	131	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	152	0	0.47	1	0.0278	1.2149	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0.47	1	1.2427	FALSE	344	827	44	306	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	3	128	MT-ND4	1220	chrM:10979:+	MT-ND4L	5536	chrM:10627:+	INCL_NON_REF_SPLICE	YES	156	0	0.46	1	0.0278	1.1871	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0.46	1	1.2149	FALSE	344	827	44	306	0	FALSE	ACH-000527
OVISE_OVARY	RP11-123O10.4--GRIP1	28	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2597	0.0649	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OVISE_OVARY	1	1	0.3246	FALSE	416	2512	207	587	0	FALSE	ACH-000527
OVISE_OVARY	GCLM--ARHGAP29	23	26	GCLM	4154	chr1:94367141:-	ARHGAP29	47153	chr1:94616071:-	ONLY_REF_SPLICE	YES	98	4	0.33	0.92	0.2133	0.2411	GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit,ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-	OVISE_OVARY	0.33	0.92	0.4544	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	3	98	MT-ND4	1471	chrM:11230:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	1679	0	0.06	1	0.0278	0.9088	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0.06	1	0.9366	FALSE	344	827	44	306	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	25	9	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	29111	149	0	0.19	0.2318	0.0835	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.19	0.3153	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	NUMA1--RP11-807H22.7	22	21	NUMA1	17194	chr11:71740251:-	RP11-807H22.7	44213	chr11:71874423:-	ONLY_REF_SPLICE	YES	114	0	0.27	1	0.204	0.1948	LOCAL_REARRANGEMENT:-:[82627],NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,RP11-807H22.7->chr11:71874366-71920285:-	OVISE_OVARY	0.27	1	0.3988	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ND5--MT-ATP8	25	8	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5114	14	0.01	0.7	0.2318	0.0742	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0.01	0.7	0.306	FALSE	43	37	8	105	0	FALSE	ACH-000527
OVISE_OVARY	SEMA5B--ZBTB38	18	33	SEMA5B	7191	chr3:122679987:-	ZBTB38	42564	chr3:141122769:+	ONLY_REF_SPLICE	YES	20	120	0.72	0.3	0.1669	0.306	SEMA5B->Oncogene{Bushman},chr3:122628041-122747452:-,semaphorin_5B,ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38	OVISE_OVARY	0.3	0.72	0.4729	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	3	90	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	372	0	0.2	1	0.0278	0.8347	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0.2	1	0.8625	FALSE	344	827	44	306	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	19	22	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	26320	149	0	0.22	0.1762	0.204	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.22	0.3802	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	PPFIA1--ANO1	21	10	PPFIA1	26844	chr11:70202360:+	ANO1	60251	chr11:69995816:+	ONLY_REF_SPLICE	YES	90	6	0.26	0.84	0.1948	0.0927	LOCAL_REARRANGEMENT:+:[81172],PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,ANO1->anoctamin_1,chr11:69924408-70035634:+	OVISE_OVARY	0.26	0.84	0.2875	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	18	21	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	27274	14	0	0.74	0.1669	0.1948	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.74	0.3617	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	3	80	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	62	0	0.57	1	0.0278	0.7419	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0.57	1	0.7697	FALSE	344	826	44	306	0	FALSE	ACH-000527
OVISE_OVARY	ATG7--SLC9A9	18	19	ATG7	20857	chr3:11389509:+	SLC9A9	42288	chr3:143515745:-	ONLY_REF_SPLICE	YES	42	0	0.47	1	0.1669	0.1762	{Klijn_CCL:Ovary=1},ATG7->autophagy_related_7,chr3:11313995-11599139:+,SLC9A9->Oncogene{Bushman},chr3:142984064-143567373:-,solute_carrier_family_9_member_A9	OVISE_OVARY	0.47	1	0.3431	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-TA--MT-TN	3	76	MT-TA	1059	chrM:5597:-	MT-TN	4015	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.7048	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVISE_OVARY	1	1	0.7326	FALSE	369	2501	205	193	0	FALSE	ACH-000527
OVISE_OVARY	PARD3--KDM3A	20	7	PARD3	2552	chr10:34985246:-	KDM3A	38592	chr2:86669141:+	ONLY_REF_SPLICE	YES	112	19	0.19	0.59	0.1855	0.0649	{Klijn_CCL:Ovary=1},PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,KDM3A->Oncogene{Bushman},chr2:86667770-86719839:+,lysine_demethylase_3A	OVISE_OVARY	0.19	0.59	0.2504	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	13	33	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	18785	0	0	1	0.1206	0.306	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0	1	0.4266	FALSE	328	800	43	304	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	15	21	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2943	0	0.01	1	0.1391	0.1948	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0.01	1	0.3339	FALSE	344	827	44	306	0	FALSE	ACH-000527
OVISE_OVARY	MT-TA--MT-TN	12	31	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1113	0.2875	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVISE_OVARY	1	1	0.3988	FALSE	369	2501	205	193	0	FALSE	ACH-000527
OVISE_OVARY	MT-TA--MT-TN	9	40	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0835	0.371	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVISE_OVARY	1	1	0.4545	FALSE	369	2501	205	193	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	18	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18963	14	0	0.6	0.1669	0.0278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.6	0.1947	FALSE	230	193	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	12	27	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	27289	0	0	1	0.1113	0.2504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.3617	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	8	41	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	7420	0	0.01	1	0.0742	0.3802	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0.01	1	0.4544	FALSE	222	212	16	282	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	18	0	MT-ATP6	1221	chrM:8747:+	MT-ND2	5581	chrM:5369:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1669	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	1	1	0.1669	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-TA--MT-TN	3	60	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.5564	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVISE_OVARY	1	1	0.5842	FALSE	369	2501	205	193	0	FALSE	ACH-000527
OVISE_OVARY	RFX3--GLIS3	15	12	RFX3	1258	chr9:3525747:-	GLIS3	55541	chr9:3937189:-	ONLY_REF_SPLICE	YES	4	59	0.87	0.31	0.1391	0.1113	RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,GLIS3->GLIS_family_zinc_finger_3,chr9:3824127-4348392:-	OVISE_OVARY	0.31	0.87	0.2504	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	9	34	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	24737	0	0	1	0.0835	0.3153	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.3988	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	PKN1--ASH1L	5	50	PKN1	12706	chr19:14574965:+	ASH1L	35468	chr1:155349902:-	INCL_NON_REF_SPLICE	YES	399	51	0.12	0.52	0.0464	0.4637	{Klijn_CCL:Ovary=1},PKN1->chr19:14543865-14582679:+,protein_kinase_N1,ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-	OVISE_OVARY	0.12	0.52	0.5101	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	9	28	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	23309	149	0	0.2	0.0835	0.2597	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.2	0.3432	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-TA--MT-TN	10	22	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0927	0.204	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVISE_OVARY	1	1	0.2967	FALSE	369	2501	205	193	0	FALSE	ACH-000527
OVISE_OVARY	SPP1--MTATP6P1	15	2	SPP1	6793	chr4:88903711:+	MTATP6P1	10956	chr1:569387:+	INCL_NON_REF_SPLICE	YES	13531	747	0	0.02	0.1391	0.0185	SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OVISE_OVARY	0	0.02	0.1576	TRUE	0	0	0	3	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	5	40	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	45	0	0.5	1	0.0464	0.371	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0.5	1	0.4174	FALSE	213	207	15	279	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	9	24	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	26750	0	0	1	0.0835	0.2226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.3061	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	8	28	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	10837	706	0	0.05	0.0742	0.2597	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.05	0.3339	FALSE	231	215	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	14	2	MT-ATP6	1560	chrM:9086:+	MT-ND2	5549	chrM:5337:+	INCL_NON_REF_SPLICE	YES	4017	7316	0	0	0.1298	0.0185	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	0	0	0.1483	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND5--MT-ATP8	10	18	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0927	0.1669	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	1	1	0.2596	FALSE	43	37	8	105	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND6--MT-TE	14	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1298	0.0185	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVISE_OVARY	1	1	0.1483	FALSE	499	1288	110	792	0	FALSE	ACH-000527
OVISE_OVARY	NRIP1--AF127936.7	14	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.55	1	0.1298	0.0185	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OVISE_OVARY	0.55	1	0.1483	FALSE	292	1546	117	613	0	FALSE	ACH-000527
OVISE_OVARY	DIAPH3--GPA33	12	9	DIAPH3	27660	chr13:60384922:-	GPA33	40220	chr1:167042776:-	ONLY_REF_SPLICE	YES	38	1	0.36	0.95	0.1113	0.0835	{Klijn_CCL:Ovary=1},DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3,GPA33->Oncogene{Bushman},chr1:167022073-167059868:-,glycoprotein_A33	OVISE_OVARY	0.36	0.95	0.1948	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	11	11	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	29111	0	0	1	0.102	0.102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.204	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	FBXO34--RALGAPA1	11	10	FBXO34	8932	chr14:55821940:+	RALGAPA1	69128	chr14:36008896:-	ONLY_REF_SPLICE	YES	0	39	1	0.35	0.102	0.0927	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,RALGAPA1->Ral_GTPase_activating_protein_catalytic_alpha_subunit_1,chr14:36007558-36278510:-	OVISE_OVARY	0.35	1	0.1947	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	5	34	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	25911	0	0	1	0.0464	0.3153	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.3617	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	5	33	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	26384	0	0	1	0.0464	0.306	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.3524	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	9	16	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	31590	978	0	0.02	0.0835	0.1484	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.02	0.2319	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	8	20	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	152	0	0.16	1	0.0742	0.1855	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0.16	1	0.2597	FALSE	344	826	44	306	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	39	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1738	0	0.02	1	0.0278	0.3617	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0.02	1	0.3895	FALSE	216	209	16	281	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	10	11	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	28407	0	0	1	0.0927	0.102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.1947	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	10	11	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	28394	0	0	1	0.0927	0.102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.1947	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	12	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22510	14	0	0.52	0.1113	0.0278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.52	0.1391	FALSE	231	205	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	10	11	MT-ND4	1473	chrM:11232:+	MT-ATP8	5419	chrM:8406:+	INCL_NON_REF_SPLICE	YES	28694	0	0	1	0.0927	0.102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.1947	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	C15orf57--CBX3	7	22	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	44	55	0.4	0.35	0.0649	0.204	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OVISE_OVARY	0.35	0.4	0.2689	TRUE	267	562	48	632	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	4	34	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	25939	0	0	1	0.0371	0.3153	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.3524	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	6	24	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	26832	0	0	1	0.0556	0.2226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.2782	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	RHOG--DLGAP3	12	0	RHOG	1090	chr11:3862124:-	DLGAP3	11090	chr1:35373038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1113	0	RHOG->Oncogene{Bushman},chr11:3848208-3862213:-,ras_homolog_family_member_G,DLGAP3->chr1:35331037-35395186:-,discs_large_homolog_associated_protein_3	OVISE_OVARY	1	1	0.1113	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	35	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	24525	0	0	1	0.0278	0.3246	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.3524	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	6	22	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	16749	0	0	1	0.0556	0.204	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0	1	0.2596	FALSE	344	827	44	306	0	FALSE	ACH-000527
OVISE_OVARY	JUP--NT5C3B	9	9	JUP	5265	chr17:39927899:-	NT5C3B	30892	chr17:39981909:-	ONLY_REF_SPLICE	YES	1360	243	0.01	0.07	0.0835	0.0835	LOCAL_REARRANGEMENT:-:[38152],JUP->chr17:39775692-39943183:-,junction_plakoglobin,NT5C3B->5'-nucleotidase,_cytosolic_IIIB,chr17:39981335-39992523:-	OVISE_OVARY	0.01	0.07	0.167	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	APP--MT-CO3	7	16	APP	11652	chr21:27394197:-	MT-CO3	32390	chrM:9421:+	INCL_NON_REF_SPLICE	YES	6670	20219	0	0	0.0649	0.1484	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OVISE_OVARY	0	0	0.2133	FALSE	0	0	0	26	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	4	28	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22232	149	0	0.18	0.0371	0.2597	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.18	0.2968	FALSE	231	215	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	8	12	MT-ND4	1503	chrM:11262:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	28863	0	0	1	0.0742	0.1113	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.1855	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	4	27	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	26964	0	0	1	0.0371	0.2504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.2875	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	8	11	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	28394	0	0	1	0.0742	0.102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.1762	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	30	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6804	149	0	0.18	0.0278	0.2782	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.18	0.306	FALSE	218	210	16	281	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND5--MT-ATP8	8	10	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	3877	2	0	0.9	0.0742	0.0927	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.9	0.1669	FALSE	43	37	8	105	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND6--MT-TE	10	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0927	0.0185	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVISE_OVARY	1	1	0.1112	FALSE	499	1288	110	792	0	FALSE	ACH-000527
OVISE_OVARY	APP--MT-CO3	7	12	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	6122	19863	0	0	0.0649	0.1113	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OVISE_OVARY	0	0	0.1762	FALSE	0	0	0	26	0	FALSE	ACH-000527
OVISE_OVARY	C15orf57--CBX3	6	16	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	42	55	0.34	0.29	0.0556	0.1484	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OVISE_OVARY	0.29	0.34	0.204	TRUE	267	562	48	632	0	FALSE	ACH-000527
OVISE_OVARY	EIF1--RPS28	10	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0927	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OVISE_OVARY	1	1	0.0927	TRUE	0	0	0	81	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	28	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	26972	0	0	1	0.0278	0.2597	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.2875	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	5	20	MT-ND4	1544	chrM:11303:+	MT-ATP8	5455	chrM:8442:+	INCL_NON_REF_SPLICE	YES	31675	0	0	1	0.0464	0.1855	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.2319	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	CYB561--hsa-mir-6080	9	3	CYB561	1481	chr17:61523259:-	hsa-mir-6080	18144	chr17:62760666:-	ONLY_REF_SPLICE	YES	70	1	0.15	0.92	0.0835	0.0278	CYB561->chr17:61509665-61523739:-,cytochrome_b561,hsa-mir-6080->chr17:62745781-62778117:-	OVISE_OVARY	0.15	0.92	0.1113	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	7	11	MT-ND4	1473	chrM:11232:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	28694	0	0	1	0.0649	0.102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.1669	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	27	MT-ND4	1787	chrM:11546:+	MT-ATP8	5393	chrM:8380:+	INCL_NON_REF_SPLICE	YES	27148	0	0	1	0.0278	0.2504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.2782	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND6--MT-TE	3	27	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.2504	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVISE_OVARY	1	1	0.2782	FALSE	499	1288	110	792	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	7	10	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	26320	2235	0	0.01	0.0649	0.0927	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.01	0.1576	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND5--MT-ATP8	8	6	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7805	149	0	0.09	0.0742	0.0556	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.09	0.1298	FALSE	43	37	8	105	0	FALSE	ACH-000527
OVISE_OVARY	EEF2--RPS28	9	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0835	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OVISE_OVARY	1	1	0.0835	TRUE	0	0	0	100	0	FALSE	ACH-000527
OVISE_OVARY	JAG2--BRF1	8	4	JAG2	12679	chr14:105611267:-	BRF1	56583	chr14:105678501:-	ONLY_REF_SPLICE	YES	16	83	0.43	0.13	0.0742	0.0371	LOCAL_REARRANGEMENT:-:[40462],JAG2->Oncogene{Bushman},chr14:105607318-105635161:-,jagged_2,BRF1->BRF1,_RNA_polymerase_III_transcription_initiation_factor_90_kDa_subunit,chr14:105675623-105781926:-	OVISE_OVARY	0.13	0.43	0.1113	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	9	0	MT-ATP6	1108	chrM:8634:+	MT-ND2	5507	chrM:5295:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0835	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	1	1	0.0835	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	9	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0835	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	1	1	0.0835	FALSE	231	204	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	6	12	MT-ND4	1510	chrM:11269:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	29860	14	0	0.56	0.0556	0.1113	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.56	0.1669	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	24	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	26419	1042	0	0.03	0.0278	0.2226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.03	0.2504	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	24	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	27041	0	0	1	0.0278	0.2226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.2504	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	5	16	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	31891	330	0	0.06	0.0464	0.1484	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.06	0.1948	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-TA--MT-TC	8	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0742	0.0371	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVISE_OVARY	1	1	0.1113	FALSE	462	80	0	856	0	FALSE	ACH-000527
OVISE_OVARY	APP--MT-CO3	4	19	APP	11655	chr21:27394194:-	MT-CO3	32390	chrM:9421:+	INCL_NON_REF_SPLICE	YES	7126	20219	0	0	0.0371	0.1762	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OVISE_OVARY	0	0	0.2133	FALSE	0	0	0	26	0	FALSE	ACH-000527
OVISE_OVARY	APP--MT-ND2	8	3	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	5994	12410	0	0	0.0742	0.0278	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	0	0	0.102	FALSE	0	1	0	51	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	8	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	18963	0	0	1	0.0742	0.0278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.102	FALSE	230	193	14	283	0	FALSE	ACH-000527
OVISE_OVARY	PARD3--KDM3A	8	3	PARD3	2552	chr10:34985246:-	KDM3A	41109	chr2:86676930:+	ONLY_REF_SPLICE	YES	112	141	0.09	0.07	0.0742	0.0278	{Klijn_CCL:Ovary=1},PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,KDM3A->Oncogene{Bushman},chr2:86667770-86719839:+,lysine_demethylase_3A	OVISE_OVARY	0.07	0.09	0.102	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	ZC3H7B--YPEL2	5	15	ZC3H7B	1251	chr22:41697776:+	YPEL2	32943	chr17:57430576:+	ONLY_REF_SPLICE	YES	186	63	0.1	0.24	0.0464	0.1391	ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,YPEL2->chr17:57409050-57479090:+,yippee_like_2	OVISE_OVARY	0.1	0.24	0.1855	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	AP000230.1--AP001596.6	7	6	AP000230.1	4332	chr21:27588148:+	AP001596.6	18001	chr21:27843070:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.87	0.0649	0.0556	GTEx_FI:{Brain=[count:3=pct:0.5]},AP000230.1->chr21:27543189-27589700:+,AP001596.6->chr21:27750871-27844017:+	OVISE_OVARY	0.87	1	0.1205	TRUE	2	11	0	3	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	6	9	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	29090	13	0	0.54	0.0556	0.0835	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.54	0.1391	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	3	21	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	291	0	0.08	1	0.0278	0.1948	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0.08	1	0.2226	FALSE	344	827	44	306	0	FALSE	ACH-000527
OVISE_OVARY	PPFIA1--ANO1	7	5	PPFIA1	26401	chr11:70201917:+	ANO1	60251	chr11:69995816:+	ONLY_REF_SPLICE	YES	64	6	0.16	0.67	0.0649	0.0464	LOCAL_REARRANGEMENT:+:[81172],PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,ANO1->anoctamin_1,chr11:69924408-70035634:+	OVISE_OVARY	0.16	0.67	0.1113	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	4	16	MT-ND4	1651	chrM:11410:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	29542	767	0	0.03	0.0371	0.1484	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.03	0.1855	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	4	16	MT-ND4	1517	chrM:11276:+	MT-ATP8	5468	chrM:8455:+	INCL_NON_REF_SPLICE	NO	30626	0	0	1	0.0371	0.1484	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.1855	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	3	20	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	9	0	0.72	1	0.0278	0.1855	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0.72	1	0.2133	FALSE	344	821	44	306	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	7	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	18963	0	0	1	0.0649	0.0278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.0927	FALSE	230	193	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	7	3	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19128	149	0	0.06	0.0649	0.0278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.06	0.0927	FALSE	230	198	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	4	15	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	27096	1840	0	0.01	0.0371	0.1391	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.01	0.1762	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	AP000230.1--AP001596.6	6	6	AP000230.1	4332	chr21:27588148:+	AP001596.6	11833	chr21:27760043:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0556	0.0556	GTEx_FI:{Brain=[count:3=pct:0.5]},AP000230.1->chr21:27543189-27589700:+,AP001596.6->chr21:27750871-27844017:+	OVISE_OVARY	1	1	0.1112	TRUE	0	11	0	2	4	FALSE	ACH-000527
OVISE_OVARY	APP--MT-ND2	7	2	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	6122	8937	0	0	0.0649	0.0185	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	0	0	0.0834	FALSE	0	1	0	51	0	FALSE	ACH-000527
OVISE_OVARY	FTH1--ACTB	7	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	11616	2	0	0.82	0.0649	0.0185	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	OVISE_OVARY	0	0.82	0.0834	FALSE	1	0	0	97	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND6--MT-TE	5	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0464	0.0927	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVISE_OVARY	0.88	1	0.1391	FALSE	499	1288	110	792	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	7	1	MT-ATP6	1130	chrM:8656:+	MT-ND2	5517	chrM:5305:+	INCL_NON_REF_SPLICE	YES	16021	9846	0	0	0.0649	0.0093	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	0	0	0.0742	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	5	9	MT-ND4	1459	chrM:11218:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	29180	14	0	0.5	0.0464	0.0835	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.5	0.1299	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND5--MT-ATP8	3	17	MT-ND5	2644	chrM:13980:+	MT-ATP8	5855	chrM:8408:+	INCL_NON_REF_SPLICE	YES	2117	0	0.01	1	0.0278	0.1577	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0.01	1	0.1855	FALSE	43	37	8	105	0	FALSE	ACH-000527
OVISE_OVARY	RP11-96H19.1--RP11-446N19.1	6	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0556	0.0464	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVISE_OVARY	0.92	1	0.102	FALSE	515	4851	409	746	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	7	0	MT-ATP6	1123	chrM:8649:+	MT-ND2	5507	chrM:5295:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	1	1	0.0649	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	16	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	31172	149	0	0.11	0.0278	0.1484	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.11	0.1762	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-TA--MT-TN	7	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVISE_OVARY	1	1	0.0649	FALSE	369	2501	205	193	0	FALSE	ACH-000527
OVISE_OVARY	NUMA1--RP11-807H22.7	1	24	NUMA1	17194	chr11:71740251:-	RP11-807H22.7	42989	chr11:71909780:-	ONLY_REF_SPLICE	YES	114	0	0.18	1	0.0093	0.2226	LOCAL_REARRANGEMENT:-:[82627],NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,RP11-807H22.7->chr11:71874366-71920285:-	OVISE_OVARY	0.18	1	0.2319	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	4	11	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	28960	0	0	1	0.0371	0.102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.1391	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	RP11-96H19.1--RP11-446N19.1	5	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0464	0.0649	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVISE_OVARY	0.92	1	0.1113	FALSE	407	2205	196	549	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	6	2	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	22274	1366	0	0.01	0.0556	0.0185	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.01	0.0741	FALSE	231	205	14	283	0	FALSE	ACH-000527
OVISE_OVARY	FAM50A--PTMA	6	1	FAM50A	3402	chrX:153674874:+	PTMA	14613	chr2:232576639:+	INCL_NON_REF_SPLICE	NO	477	3985	0.01	0	0.0556	0.0093	FAM50A->chrX:153672473-153679002:+,family_with_sequence_similarity_50_member_A,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	OVISE_OVARY	0	0.01	0.0649	FALSE	0	0	0	2	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	6	1	MT-ATP6	1562	chrM:9088:+	MT-ND2	5561	chrM:5349:+	INCL_NON_REF_SPLICE	YES	3701	6344	0	0	0.0556	0.0093	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	0	0	0.0649	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	13	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	29326	0	0	1	0.0278	0.1206	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.1484	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	4	9	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	29565	706	0	0.02	0.0371	0.0835	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.02	0.1206	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	13	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	26060	2235	0	0.01	0.0278	0.1206	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.01	0.1484	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	RP11-120D5.1--MID1	6	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	107	0.78	0.06	0.0556	0.0093	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OVISE_OVARY	0.06	0.78	0.0649	FALSE	16	356	14	466	0	FALSE	ACH-000527
OVISE_OVARY	CYB561--hsa-mir-6080	6	0	CYB561	1134	chr17:61523606:-	hsa-mir-6080	19242	chr17:62758828:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0556	0	CYB561->chr17:61509665-61523739:-,cytochrome_b561,hsa-mir-6080->chr17:62745781-62778117:-	OVISE_OVARY	1	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	6	0	MT-ATP6	1127	chrM:8653:+	MT-ND2	5145	chrM:4933:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0556	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	1	1	0.0556	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	5	4	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	26749	1840	0	0	0.0464	0.0371	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0	0.0835	FALSE	231	205	14	283	0	FALSE	ACH-000527
OVISE_OVARY	RCC1--CTD-2354A18.1	6	0	RCC1	2175	chr1:28834672:+	CTD-2354A18.1	21770	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0556	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CTD-2354A18.1->chr18:70992176-71017113:+	OVISE_OVARY	1	1	0.0556	TRUE	0	1	0	7	0	TRUE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	5	3	MT-ATP6	1140	chrM:8666:+	MT-ND2	5395	chrM:5183:+	INCL_NON_REF_SPLICE	YES	17320	17422	0	0	0.0464	0.0278	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	0	0	0.0742	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	5	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	19116	149	0	0.05	0.0464	0.0278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.05	0.0742	FALSE	230	198	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	5	3	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18705	14	0	0.36	0.0464	0.0278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.36	0.0742	FALSE	230	193	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	11	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	29067	0	0	1	0.0278	0.102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.1298	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	5	3	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	19007	0	0	1	0.0464	0.0278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.0742	FALSE	230	197	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND5--MT-ATP8	3	11	MT-ND5	2290	chrM:13626:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4464	0	0	1	0.0278	0.102	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.1298	FALSE	43	37	8	105	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND6--MT-TE	3	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.102	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVISE_OVARY	1	1	0.1298	FALSE	499	1288	110	792	0	FALSE	ACH-000527
OVISE_OVARY	TRIM28--MTND2P28	5	3	TRIM28	6714	chr19:59061409:+	MTND2P28	10414	chr1:565039:+	INCL_NON_REF_SPLICE	YES	1236	0	0.01	1	0.0464	0.0278	TRIM28->chr19:59055458-59062089:+,tripartite_motif_containing_28,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	OVISE_OVARY	0.01	1	0.0742	FALSE	0	0	0	2	0	FALSE	ACH-000527
OVISE_OVARY	ZC3H7B--L3MBTL2	1	19	ZC3H7B	20901	chr22:41745305:+	L3MBTL2	36220	chr22:41612143:+	ONLY_REF_SPLICE	NO	181	63	0.1	0.24	0.0093	0.1762	{Klijn_CCL:Lung=1,Ovary=1},LOCAL_REARRANGEMENT:+:[70251],ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,L3MBTL2->L3MBTL2_polycomb_repressive_complex_1_subunit,chr22:41601209-41627275:+	OVISE_OVARY	0.1	0.24	0.1855	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	4	6	MT-ATP6	1137	chrM:8663:+	MT-ND2	4927	chrM:4715:+	INCL_NON_REF_SPLICE	YES	16999	20225	0	0	0.0371	0.0556	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	0	0	0.0927	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ND4L	3	10	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	321	0	0.04	1	0.0278	0.0927	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVISE_OVARY	0.04	1	0.1205	FALSE	344	827	44	306	0	FALSE	ACH-000527
OVISE_OVARY	FAM50A--PTMA	5	1	FAM50A	3405	chrX:153674877:+	PTMA	14625	chr2:232576651:+	INCL_NON_REF_SPLICE	YES	475	3771	0.01	0	0.0464	0.0093	FAM50A->chrX:153672473-153679002:+,family_with_sequence_similarity_50_member_A,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	OVISE_OVARY	0	0.01	0.0557	FALSE	0	0	0	2	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	9	MT-ND4	1471	chrM:11230:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	28338	149	0	0.07	0.0278	0.0835	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.07	0.1113	FALSE	231	217	16	283	0	FALSE	ACH-000527
OVISE_OVARY	APP--MT-CO3	3	8	APP	11610	chr21:27394239:-	MT-CO3	32314	chrM:9345:+	INCL_NON_REF_SPLICE	YES	6094	10187	0	0	0.0278	0.0742	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OVISE_OVARY	0	0	0.102	FALSE	0	0	0	26	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	5	0	MT-ATP6	1084	chrM:8610:+	MT-ND2	4680	chrM:4468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	1	1	0.0464	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	5	0	MT-ATP6	1110	chrM:8636:+	MT-ND2	5530	chrM:5318:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	1	1	0.0464	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	5	0	MT-ATP6	1107	chrM:8633:+	MT-ND2	5117	chrM:4905:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	1	1	0.0464	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	5	0	MT-ATP6	1183	chrM:8709:+	MT-ND2	5606	chrM:5394:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	1	1	0.0464	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	8	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	28265	2	0	0.85	0.0278	0.0742	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.85	0.102	FALSE	231	216	16	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND5--MT-ATP8	3	8	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	5720	0	0	1	0.0278	0.0742	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.102	FALSE	43	37	8	105	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVISE_OVARY	1	1	0.0464	FALSE	499	1288	110	792	0	FALSE	ACH-000527
OVISE_OVARY	MT-TA--MT-TN	5	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVISE_OVARY	1	1	0.0464	FALSE	369	2501	205	193	0	FALSE	ACH-000527
OVISE_OVARY	MT-TA--MT-TN	5	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVISE_OVARY	1	1	0.0464	FALSE	369	2501	205	193	0	FALSE	ACH-000527
OVISE_OVARY	APP--MT-CO3	4	3	APP	11552	chr21:27394297:-	MT-CO3	32340	chrM:9371:+	INCL_NON_REF_SPLICE	YES	4109	15741	0	0	0.0371	0.0278	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OVISE_OVARY	0	0	0.0649	FALSE	0	0	0	26	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	3	7	MT-ATP6	1158	chrM:8684:+	MT-ND2	5092	chrM:4880:+	INCL_NON_REF_SPLICE	YES	19315	24772	0	0	0.0278	0.0649	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	0	0	0.0927	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	4	3	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	19243	200	0	0.03	0.0371	0.0278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.03	0.0649	FALSE	231	204	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	7	MT-ND4	1311	chrM:11070:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	26638	0	0	1	0.0278	0.0649	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.0927	FALSE	231	205	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	4	3	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	19667	0	0	1	0.0371	0.0278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.0649	FALSE	231	204	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-TA--MT-TC	3	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.0649	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVISE_OVARY	1	1	0.0927	FALSE	462	80	0	856	0	FALSE	ACH-000527
OVISE_OVARY	PCDHA4--TMCO6	4	3	PCDHA4	3499	chr5:140189157:+	TMCO6	14463	chr5:140021250:+	ONLY_REF_SPLICE	YES	64	95	0.1	0.07	0.0371	0.0278	PCDHA4->chr5:140186659-140391929:+,protocadherin_alpha_4,TMCO6->chr5:140019012-140024993:+,transmembrane_and_coiled-coil_domains_6	OVISE_OVARY	0.07	0.1	0.0649	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	TFB2M--SCCPDH	4	3	TFB2M	4440	chr1:246719985:-	SCCPDH	14074	chr1:246890194:+	INCL_NON_REF_SPLICE	YES	58	161	0.11	0.04	0.0371	0.0278	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},TFB2M->chr1:246703862-246729626:-,transcription_factor_B2,_mitochondrial,SCCPDH->chr1:246887349-246931439:+,saccharopine_dehydrogenase_(putative)	OVISE_OVARY	0.04	0.11	0.0649	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	CYB561--hsa-mir-6080	4	2	CYB561	1481	chr17:61523259:-	hsa-mir-6080	19242	chr17:62758828:-	ONLY_REF_SPLICE	YES	70	36	0.08	0.14	0.0371	0.0185	CYB561->chr17:61509665-61523739:-,cytochrome_b561,hsa-mir-6080->chr17:62745781-62778117:-	OVISE_OVARY	0.08	0.14	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	6	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	24810	0	0	1	0.0278	0.0556	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.0834	FALSE	231	205	14	283	0	FALSE	ACH-000527
OVISE_OVARY	AP5S1--C20orf27	4	1	AP5S1	2516	chr20:3802940:+	C20orf27	10128	chr20:3740833:-	ONLY_REF_SPLICE	YES	108	72	0.04	0.06	0.0371	0.0093	LOCAL_INVERSION:+:-:[52144],AP5S1->adaptor_related_protein_complex_5_sigma_1_subunit,chr20:3801178-3805949:+,C20orf27->chr20:3734155-3749034:-,chromosome_20_open_reading_frame_27	OVISE_OVARY	0.04	0.06	0.0464	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	EIF1--RPS28	4	1	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	129	0	0.04	1	0.0371	0.0093	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OVISE_OVARY	0.04	1	0.0464	TRUE	0	0	0	81	0	FALSE	ACH-000527
OVISE_OVARY	GCLM--ARHGAP29	2	9	GCLM	2812	chr1:94370079:-	ARHGAP29	47153	chr1:94616071:-	ONLY_REF_SPLICE	YES	45	4	0.2	0.73	0.0185	0.0835	GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit,ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-	OVISE_OVARY	0.2	0.73	0.102	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	SEMA5B--ZBTB38	1	13	SEMA5B	2142	chr3:122746311:-	ZBTB38	42564	chr3:141122769:+	ONLY_REF_SPLICE	YES	233	120	0.06	0.1	0.0093	0.1206	SEMA5B->Oncogene{Bushman},chr3:122628041-122747452:-,semaphorin_5B,ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38	OVISE_OVARY	0.06	0.1	0.1299	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	EIF1--RPS28	4	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OVISE_OVARY	1	1	0.0371	TRUE	0	0	0	81	0	FALSE	ACH-000527
OVISE_OVARY	LIPE-AS1--KDM2A	4	0	LIPE-AS1	1097	chr19:42901376:+	KDM2A	25250	chr11:66974981:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	LIPE-AS1->LIPE_antisense_RNA_1,chr19:42901280-43156507:+,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	OVISE_OVARY	1	1	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	4	0	MT-ATP6	1090	chrM:8616:+	MT-ND2	4686	chrM:4474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	1	1	0.0371	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	3	4	MT-ATP6	1183	chrM:8709:+	MT-ND2	5401	chrM:5189:+	INCL_NON_REF_SPLICE	YES	21235	17049	0	0	0.0278	0.0371	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	0	0	0.0649	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	4	0	MT-ATP6	1158	chrM:8684:+	MT-ND2	5581	chrM:5369:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	1	1	0.0371	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	4	0	MT-ATP6	1046	chrM:8572:+	MT-ND2	5439	chrM:5227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	1	1	0.0371	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	4	0	MT-ATP6	1082	chrM:8608:+	MT-ND2	5549	chrM:5337:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	1	1	0.0371	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND5--MT-ATP8	3	4	MT-ND5	1823	chrM:13159:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	5418	0	0	1	0.0278	0.0371	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.0649	FALSE	43	37	8	105	0	FALSE	ACH-000527
OVISE_OVARY	PCDP1--STEAP3	4	0	PCDP1	33376	chr2:120409645:+	STEAP3	45800	chr2:120003065:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	PCDP1->chr2:120302008-120419827:+,STEAP3->STEAP3_metalloreductase,chr2:119981384-120023228:+	OVISE_OVARY	1	1	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	RP3-510D11.1--PTBP1	4	0	RP3-510D11.1	3450	chr1:9242066:-	PTBP1	14619	chr19:808360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	RP3-510D11.1->chr1:9242066-9262678:-,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	OVISE_OVARY	1	1	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	APP--MT-ND2	3	3	APP	11652	chr21:27394197:-	MT-ND2	33030	chrM:5324:+	INCL_NON_REF_SPLICE	YES	6670	8414	0	0	0.0278	0.0278	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	0	0	0.0556	FALSE	0	1	0	51	0	FALSE	ACH-000527
OVISE_OVARY	APP--MT-ND2	3	3	APP	11619	chr21:27394230:-	MT-ND2	32998	chrM:5292:+	INCL_NON_REF_SPLICE	YES	5801	10661	0	0	0.0278	0.0278	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	0	0	0.0556	FALSE	0	1	0	51	0	FALSE	ACH-000527
OVISE_OVARY	FTH1--ACTB	3	3	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	12140	3	0	0.67	0.0278	0.0278	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	OVISE_OVARY	0	0.67	0.0556	FALSE	1	0	0	97	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	3	MT-ND4	1244	chrM:11003:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	19592	978	0	0.01	0.0278	0.0278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.01	0.0556	FALSE	231	204	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	3	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	NO	19698	0	0	1	0.0278	0.0278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	1	0.0556	FALSE	231	204	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	3	MT-ND4	1245	chrM:11004:+	MT-ATP8	5477	chrM:8464:+	INCL_NON_REF_SPLICE	YES	19647	9	0	0.4	0.0278	0.0278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.4	0.0556	FALSE	231	204	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND5--MT-ATP8	3	3	MT-ND5	1795	chrM:13131:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5103	14	0	0.3	0.0278	0.0278	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.3	0.0556	FALSE	43	37	8	105	0	FALSE	ACH-000527
OVISE_OVARY	CDK17--C12orf55	2	6	CDK17	1575	chr12:96793764:-	C12orf55	28219	chr12:96894612:+	ONLY_REF_SPLICE	YES	63	1	0.11	0.89	0.0185	0.0556	LOCAL_INVERSION:-:+:[89011],CDK17->chr12:96672039-96794338:-,cyclin-dependent_kinase_17,C12orf55->chr12:96883349-97269333:+	OVISE_OVARY	0.11	0.89	0.0741	TRUE	0	0	0	2	0	TRUE	ACH-000527
OVISE_OVARY	FTH1--ACTB	3	2	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	10463	2	0	0.71	0.0278	0.0185	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	OVISE_OVARY	0	0.71	0.0463	FALSE	1	0	0	97	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	3	2	MT-ATP6	1443	chrM:8969:+	MT-ND2	5539	chrM:5327:+	INCL_NON_REF_SPLICE	YES	16654	8430	0	0	0.0278	0.0185	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	0	0	0.0463	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND5--MT-ATP8	3	2	MT-ND5	1807	chrM:13143:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	5131	904	0	0.01	0.0278	0.0185	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0.01	0.0463	FALSE	43	37	8	105	0	FALSE	ACH-000527
OVISE_OVARY	SYTL3--TMEM181	3	2	SYTL3	6128	chr6:159086645:+	TMEM181	39274	chr6:159052355:+	ONLY_REF_SPLICE	YES	108	64	0.04	0.07	0.0278	0.0185	LOCAL_REARRANGEMENT:+:[14586],SYTL3->chr6:159071046-159185908:+,synaptotagmin_like_3,TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181	OVISE_OVARY	0.04	0.07	0.0463	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	ANKRD13D--KDM2A	2	5	ANKRD13D	4634	chr11:67059651:+	KDM2A	27930	chr11:66999037:+	ONLY_REF_SPLICE	YES	125	72	0.05	0.09	0.0185	0.0464	LOCAL_REARRANGEMENT:+:[30460],ANKRD13D->ankyrin_repeat_domain_13_family_member_D,chr11:67056018-67069956:+,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	OVISE_OVARY	0.05	0.09	0.0649	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	3	1	MT-ATP6	1130	chrM:8656:+	MT-ND2	5529	chrM:5317:+	INCL_NON_REF_SPLICE	YES	16021	8847	0	0	0.0278	0.0093	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	0	0	0.0371	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	3	1	MT-ATP6	1128	chrM:8654:+	MT-ND2	5530	chrM:5318:+	INCL_NON_REF_SPLICE	YES	15922	8838	0	0	0.0278	0.0093	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	0	0	0.0371	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND5--MT-ATP8	3	1	MT-ND5	1602	chrM:12938:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	6694	904	0	0	0.0278	0.0093	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	0	0	0.0371	FALSE	42	36	7	104	0	FALSE	ACH-000527
OVISE_OVARY	MT-TA--MT-TC	3	1	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.0093	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVISE_OVARY	1	1	0.0371	FALSE	462	80	0	856	0	FALSE	ACH-000527
OVISE_OVARY	MT-TA--MT-TC	3	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.0093	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVISE_OVARY	1	1	0.0371	FALSE	462	80	0	856	0	FALSE	ACH-000527
OVISE_OVARY	PARD3--S100A7A	3	1	PARD3	2552	chr10:34985246:-	S100A7A	38763	chr1:153390542:+	ONLY_REF_SPLICE	YES	112	1	0.03	0.8	0.0278	0.0093	PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,S100A7A->S100_calcium_binding_protein_A7A,chr1:153389000-153395701:+	OVISE_OVARY	0.03	0.8	0.0371	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	RP11-123O10.4--GRIP1	2	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0.0464	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OVISE_OVARY	1	1	0.0649	FALSE	93	270	15	244	0	FALSE	ACH-000527
OVISE_OVARY	RP13-188A5.1--KLF8	3	1	RP13-188A5.1	2795	chrX:56041394:+	KLF8	7929	chrX:56276664:+	INCL_NON_REF_SPLICE	YES	0	269	1	0.01	0.0278	0.0093	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	OVISE_OVARY	0.01	1	0.0371	FALSE	1	15	1	5	11	FALSE	ACH-000527
OVISE_OVARY	ACTR3C--RP11-728K20.1	3	0	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	19906	chr7:149588390:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	OVISE_OVARY	1	1	0.0278	TRUE	3	46	4	12	0	FALSE	ACH-000527
OVISE_OVARY	ANP32B--APP	3	0	ANP32B	8117	chr9:100773588:+	APP	24361	chr21:27394320:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	OVISE_OVARY	1	1	0.0278	TRUE	0	0	0	7	0	TRUE	ACH-000527
OVISE_OVARY	CYB561--hsa-mir-6080	3	0	CYB561	1125	chr17:61523615:-	hsa-mir-6080	18144	chr17:62760666:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	CYB561->chr17:61509665-61523739:-,cytochrome_b561,hsa-mir-6080->chr17:62745781-62778117:-	OVISE_OVARY	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	EIF1--RPS28	3	0	EIF1	1089	chr17:39845225:+	RPS28	8128	chr19:8386385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OVISE_OVARY	1	1	0.0278	TRUE	0	0	0	81	0	FALSE	ACH-000527
OVISE_OVARY	EIF1--RPS28	3	0	EIF1	1087	chr17:39845223:+	RPS28	8126	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OVISE_OVARY	1	1	0.0278	TRUE	0	0	0	81	0	FALSE	ACH-000527
OVISE_OVARY	MT-ATP6--MT-ND2	3	0	MT-ATP6	1108	chrM:8634:+	MT-ND2	4904	chrM:4692:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVISE_OVARY	1	1	0.0278	FALSE	177	96	13	17	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	0	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	1	1	0.0278	FALSE	230	191	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND4--MT-ATP8	3	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	1	1	0.0278	FALSE	231	205	14	283	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND5--MT-ATP8	3	0	MT-ND5	1408	chrM:12744:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	1	1	0.0278	FALSE	42	36	7	104	0	FALSE	ACH-000527
OVISE_OVARY	MT-ND5--MT-ATP8	3	0	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVISE_OVARY	1	1	0.0278	FALSE	41	30	6	102	0	FALSE	ACH-000527
OVISE_OVARY	MTATP6P1--MTND2P28	3	0	MTATP6P1	1090	chr1:569165:+	MTND2P28	4686	chr1:565024:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	OVISE_OVARY	1	1	0.0278	TRUE	20	3	0	12	0	FALSE	ACH-000527
OVISE_OVARY	RP11-319G9.5--WWOX	3	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	OVISE_OVARY	1	1	0.0278	FALSE	154	425	28	76	0	FALSE	ACH-000527
OVISE_OVARY	RP11-662B19.2--WDR37	3	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	OVISE_OVARY	1	1	0.0278	TRUE	31	42	1	25	0	FALSE	ACH-000527
OVISE_OVARY	SOD2--RPL22	3	0	SOD2	15023	chr6:160103516:-	RPL22	37383	chr1:6257807:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	SOD2->chr6:160090089-160183561:-,superoxide_dismutase_2,_mitochondrial,RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22	OVISE_OVARY	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	AHSA2--KIAA1841	2	3	AHSA2	8066	chr2:61413632:+	KIAA1841	37952	chr2:61343114:+	ONLY_REF_SPLICE	YES	181	39	0.03	0.11	0.0185	0.0278	LOCAL_REARRANGEMENT:+:[12593],AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+,KIAA1841->KIAA1841,chr2:61293006-61391960:+	OVISE_OVARY	0.03	0.11	0.0463	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	NRIP1--AF127936.7	2	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	58	0	0.08	1	0.0185	0.0278	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OVISE_OVARY	0.08	1	0.0463	FALSE	125	705	46	456	0	FALSE	ACH-000527
OVISE_OVARY	SEMA5B--ZBTB38	1	7	SEMA5B	2142	chr3:122746311:-	ZBTB38	49582	chr3:141161231:+	ONLY_REF_SPLICE	NO	233	328	0.03	0.02	0.0093	0.0649	SEMA5B->Oncogene{Bushman},chr3:122628041-122747452:-,semaphorin_5B,ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38	OVISE_OVARY	0.02	0.03	0.0742	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	ANKRD13D--KDM2A	2	2	ANKRD13D	4200	chr11:67059217:+	KDM2A	27930	chr11:66999037:+	ONLY_REF_SPLICE	YES	109	72	0.04	0.05	0.0185	0.0185	LOCAL_REARRANGEMENT:+:[30460],ANKRD13D->ankyrin_repeat_domain_13_family_member_D,chr11:67056018-67069956:+,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	OVISE_OVARY	0.04	0.05	0.037	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	ATG7--SLC9A9	1	6	ATG7	18658	chr3:11383753:+	SLC9A9	42288	chr3:143515745:-	ONLY_REF_SPLICE	NO	50	0	0.12	1	0.0093	0.0556	{Klijn_CCL:Ovary=1},ATG7->autophagy_related_7,chr3:11313995-11599139:+,SLC9A9->Oncogene{Bushman},chr3:142984064-143567373:-,solute_carrier_family_9_member_A9	OVISE_OVARY	0.12	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	HIF1A--RP11-47I22.3	2	1	HIF1A	1327	chr14:62162557:+	RP11-47I22.3	25003	chr14:62117680:+	ONLY_REF_SPLICE	YES	2012	19	0	0.14	0.0185	0.0093	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	OVISE_OVARY	0	0.14	0.0278	FALSE	0	2	0	2	2	FALSE	ACH-000527
OVISE_OVARY	HM13--REM1	2	1	HM13	16224	chr20:30154098:+	REM1	26931	chr20:30071962:+	ONLY_REF_SPLICE	YES	3666	0	0	1	0.0185	0.0093	LOCAL_REARRANGEMENT:+:[29523],HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13,REM1->RAS_(RAD_and_GEM)-like_GTP-binding_1,chr20:30063096-30072708:+	OVISE_OVARY	0	1	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	PRRG2--CCDC155	1	5	PRRG2	1836	chr19:50084738:+	CCDC155	15450	chr19:49897733:+	ONLY_REF_SPLICE	NO	147	13	0.04	0.32	0.0093	0.0464	{Klijn_CCL:Ovary=1},PRRG2->chr19:50083903-50094272:+,proline_rich_and_Gla_domain_2,CCDC155->chr19:49891475-49921251:+,coiled-coil_domain_containing_155	OVISE_OVARY	0.04	0.32	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	CPSF6--TFG	2	0	CPSF6	1170	chr12:69633486:+	TFG	30723	chr3:100463677:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+	OVISE_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	FBXO34--RALGAPA1	1	4	FBXO34	8295	chr14:55821303:+	RALGAPA1	69128	chr14:36008896:-	ONLY_REF_SPLICE	YES	2	39	0.71	0.11	0.0093	0.0371	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,RALGAPA1->Ral_GTPase_activating_protein_catalytic_alpha_subunit_1,chr14:36007558-36278510:-	OVISE_OVARY	0.11	0.71	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	FUT8--HIF1A	2	0	FUT8	12030	chr14:66028484:+	HIF1A	32603	chr14:62187100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	OVISE_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	LHFPL2--ARHGEF28	2	0	LHFPL2	7033	chr5:77928087:-	ARHGEF28	33056	chr5:73090227:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,ARHGEF28->Rho_guanine_nucleotide_exchange_factor_28,chr5:72921983-73237818:+	OVISE_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	MTFR1--ARMC1	2	0	MTFR1	1051	chr8:66557019:+	ARMC1	26375	chr8:66525668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	LOCAL_INVERSION:+:-:[10527],MTFR1->chr8:66556969-66683496:+,mitochondrial_fission_regulator_1,ARMC1->armadillo_repeat_containing_1,chr8:66514694-66546442:-	OVISE_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000527
OVISE_OVARY	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	99	0	0.04	1	0.0093	0.0278	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OVISE_OVARY	0.04	1	0.0371	FALSE	164	806	69	479	0	FALSE	ACH-000527
OVISE_OVARY	TFB2M--SCCPDH	1	3	TFB2M	3742	chr1:246720683:-	SCCPDH	14074	chr1:246890194:+	ONLY_REF_SPLICE	NO	70	161	0.05	0.02	0.0093	0.0278	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},TFB2M->chr1:246703862-246729626:-,transcription_factor_B2,_mitochondrial,SCCPDH->chr1:246887349-246931439:+,saccharopine_dehydrogenase_(putative)	OVISE_OVARY	0.02	0.05	0.0371	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	ZNF573--HKR1	1	3	ZNF573	9701	chr19:38264301:-	HKR1	36145	chr19:37838092:+	ONLY_REF_SPLICE	YES	13	121	0.24	0.03	0.0093	0.0278	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573,HKR1->HKR1,_GLI-Kruppel_zinc_finger_family_member,Oncogene{Bushman},chr19:37803739-37860267:+	OVISE_OVARY	0.03	0.24	0.0371	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	ZNF573--HKR1	1	3	ZNF573	9701	chr19:38264301:-	HKR1	36187	chr19:37838134:+	ONLY_REF_SPLICE	YES	13	121	0.24	0.03	0.0093	0.0278	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573,HKR1->HKR1,_GLI-Kruppel_zinc_finger_family_member,Oncogene{Bushman},chr19:37803739-37860267:+	OVISE_OVARY	0.03	0.24	0.0371	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	PARD3--KDM3A	1	2	PARD3	1450	chr10:35103804:-	KDM3A	38592	chr2:86669141:+	ONLY_REF_SPLICE	NO	107	19	0.03	0.14	0.0093	0.0185	{Klijn_CCL:Ovary=1},PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,KDM3A->Oncogene{Bushman},chr2:86667770-86719839:+,lysine_demethylase_3A	OVISE_OVARY	0.03	0.14	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	SYTL3--TMEM181	1	2	SYTL3	6128	chr6:159086645:+	TMEM181	37101	chr6:159049440:+	ONLY_REF_SPLICE	NO	108	67	0.03	0.04	0.0093	0.0185	LOCAL_REARRANGEMENT:+:[14586],SYTL3->chr6:159071046-159185908:+,synaptotagmin_like_3,TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181	OVISE_OVARY	0.03	0.04	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	C7orf50--CTBP1	1	1	C7orf50	11060	chr7:1049586:-	CTBP1	19659	chr4:1235307:-	ONLY_REF_SPLICE	YES	457	24	0	0.08	0.0093	0.0093	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	OVISE_OVARY	0	0.08	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	DANCR--CTD-2354A18.1	1	1	DANCR	1530	chr4:53579126:+	CTD-2354A18.1	10188	chr18:70999700:+	ONLY_REF_SPLICE	YES	307	475	0.01	0	0.0093	0.0093	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,CTD-2354A18.1->chr18:70992176-71017113:+	OVISE_OVARY	0	0.01	0.0186	FALSE	0	0	0	5	0	FALSE	ACH-000527
OVISE_OVARY	EFCAB11--RP11-944C7.1	1	1	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	80	0	0.02	1	0.0093	0.0093	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	OVISE_OVARY	0.02	1	0.0186	TRUE	31	91	1	18	0	FALSE	ACH-000527
OVISE_OVARY	F3--SPG7	1	1	F3	1264	chr1:95007093:-	SPG7	29909	chr16:89611056:+	ONLY_REF_SPLICE	YES	2132	166	0	0.01	0.0093	0.0093	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Head-Neck=2,Breast=1},F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	OVISE_OVARY	0	0.01	0.0186	FALSE	0	0	0	8	0	FALSE	ACH-000527
OVISE_OVARY	FAM50A--PTMA	1	1	FAM50A	3436	chrX:153674908:+	PTMA	15136	chr2:232577162:+	ONLY_REF_SPLICE	YES	479	3711	0	0	0.0093	0.0093	FAM50A->chrX:153672473-153679002:+,family_with_sequence_similarity_50_member_A,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	OVISE_OVARY	0	0	0.0186	FALSE	0	0	0	2	0	FALSE	ACH-000527
OVISE_OVARY	LAMC1--HNRNPA3	1	1	LAMC1	14420	chr1:183094685:+	HNRNPA3	36459	chr2:178081636:+	ONLY_REF_SPLICE	NO	3320	539	0	0	0.0093	0.0093	LAMC1->chr1:182992595-183114727:+,laminin_subunit_gamma_1,HNRNPA3->Oncogene{Bushman},chr2:178077291-178088686:+,heterogeneous_nuclear_ribonucleoprotein_A3	OVISE_OVARY	0	0	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	POLD4--NCOA3	1	1	POLD4	3135	chr11:67120162:-	NCOA3	10292	chr20:46250973:+	ONLY_REF_SPLICE	YES	288	844	0.01	0	0.0093	0.0093	POLD4->chr11:67118248-67124443:-,polymerase_(DNA)_delta_4,_accessory_subunit,NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3	OVISE_OVARY	0	0.01	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	RBM6--PRKAR2A	1	1	RBM6	3185	chr3:50000118:+	PRKAR2A	35353	chr3:48845117:-	ONLY_REF_SPLICE	NO	194	41	0.01	0.05	0.0093	0.0093	RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,PRKAR2A->chr3:48782030-48885279:-,protein_kinase_cAMP-dependent_type_II_regulatory_subunit_alpha	OVISE_OVARY	0.01	0.05	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000527
OVISE_OVARY	RP13-188A5.1--KLF8	1	1	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	NO	3	269	0.4	0.01	0.0093	0.0093	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	OVISE_OVARY	0.01	0.4	0.0186	FALSE	10	78	6	20	0	FALSE	ACH-000527
OVISE_OVARY	SEP15--PKN2	1	1	SEP15	2787	chr1:87368964:-	PKN2	12507	chr1:89206671:+	ONLY_REF_SPLICE	YES	2013	95	0	0.02	0.0093	0.0093	SEP15->chr1:87328132-87380107:-,PKN2->chr1:89149905-89301938:+,protein_kinase_N2	OVISE_OVARY	0	0.02	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000527
HCC1419_BREAST	PLEC--NDUFAF6	590	510	PLEC	19135	chr8:145007365:-	NDUFAF6	61242	chr8:96059222:+	ONLY_REF_SPLICE	YES	249	1384	0.82	0.44	6.7779	5.8589	PLEC->chr8:144989321-145050902:-,plectin,NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+	HCC1419_BREAST	0.44	0.82	12.6368	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CCNE2--RMDN1	355	367	CCNE2	5802	chr8:95902643:-	RMDN1	30267	chr8:87487182:-	ONLY_REF_SPLICE	YES	292	188	0.71	0.79	4.0782	4.2161	CCNE2->chr8:95891998-95908906:-,cyclin_E2,RMDN1->chr8:87480486-87526586:-,regulator_of_microtubule_dynamics_1	HCC1419_BREAST	0.71	0.79	8.2943	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	STARD3--TAC4	324	35	STARD3	1167	chr17:37793484:+	TAC4	16479	chr17:47921519:-	ONLY_REF_SPLICE	YES	426	0	0.46	1	3.7221	0.4021	STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+,TAC4->chr17:47915671-47925379:-,tachykinin_4_(hemokinin)	HCC1419_BREAST	0.46	1	4.1242	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	VPS18--ZFYVE19	234	250	VPS18	3913	chr15:41191196:+	ZFYVE19	16279	chr15:41104897:+	ONLY_REF_SPLICE	YES	44	99	0.92	0.83	2.6882	2.872	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[79861],VPS18->VPS18,_CORVET/HOPS_core_subunit,chr15:41186628-41196173:+,ZFYVE19->chr15:41099284-41106767:+,zinc_finger_FYVE-type_containing_19	HCC1419_BREAST	0.83	0.92	5.5602	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	PLEC--NDUFAF6	87	534	PLEC	19167	chr8:145007333:-	NDUFAF6	61242	chr8:96059222:+	INCL_NON_REF_SPLICE	YES	295	1384	0.68	0.31	0.9995	6.1346	PLEC->chr8:144989321-145050902:-,plectin,NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+	HCC1419_BREAST	0.31	0.68	7.1341	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	PLEC--NDUFAF6	3	510	PLEC	19135	chr8:145007365:-	NDUFAF6	61217	chr8:96059197:+	INCL_NON_REF_SPLICE	YES	249	1475	0.67	0.26	0.0345	5.8589	PLEC->chr8:144989321-145050902:-,plectin,NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+	HCC1419_BREAST	0.26	0.67	5.8934	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	VPS18--ZFYVE19	94	115	VPS18	3913	chr15:41191196:+	ZFYVE19	16918	chr15:41105536:+	ONLY_REF_SPLICE	YES	44	193	0.83	0.52	1.0799	1.3211	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[79861],VPS18->VPS18,_CORVET/HOPS_core_subunit,chr15:41186628-41196173:+,ZFYVE19->chr15:41099284-41106767:+,zinc_finger_FYVE-type_containing_19	HCC1419_BREAST	0.52	0.83	2.401	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	PLEC--NDUFAF6	4	464	PLEC	19131	chr8:145007369:-	NDUFAF6	61242	chr8:96059222:+	INCL_NON_REF_SPLICE	YES	240	1384	0.66	0.25	0.046	5.3304	PLEC->chr8:144989321-145050902:-,plectin,NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+	HCC1419_BREAST	0.25	0.66	5.3764	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	SYT7--CYB5R2	103	8	SYT7	1359	chr11:61348262:-	CYB5R2	21954	chr11:7695724:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.1833	0.0919	SYT7->chr11:61282785-61348620:-,synaptotagmin_7,CYB5R2->chr11:7686331-7698453:-,cytochrome_b5_reductase_2	HCC1419_BREAST	1	1	1.2752	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	RNFT1--SARM1	79	50	RNFT1	4321	chr17:58037327:-	SARM1	27366	chr17:26726589:+	INCL_NON_REF_SPLICE	YES	69	7	0.65	0.95	0.9076	0.5744	RNFT1->chr17:58029601-58042122:-,ring_finger_protein,_transmembrane_1,SARM1->chr17:26691378-26728065:+,sterile_alpha_and_TIR_motif_containing_1	HCC1419_BREAST	0.65	0.95	1.482	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	ZNF251--TSHZ2	75	50	ZNF251	3735	chr8:145979068:-	TSHZ2	17828	chr20:52103683:+	ONLY_REF_SPLICE	YES	396	0	0.24	1	0.8616	0.5744	HGNC_GENEFAM,ZNF251->chr8:145946298-145981802:-,zinc_finger_protein_251,TSHZ2->chr20:51588946-52111869:+,teashirt_zinc_finger_homeobox_2	HCC1419_BREAST	0.24	1	1.436	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CCNE2--RMDN1	26	238	CCNE2	5802	chr8:95902643:-	RMDN1	30306	chr8:87487143:-	ONLY_REF_SPLICE	YES	292	176	0.47	0.6	0.2987	2.7341	CCNE2->chr8:95891998-95908906:-,cyclin_E2,RMDN1->chr8:87480486-87526586:-,regulator_of_microtubule_dynamics_1	HCC1419_BREAST	0.47	0.6	3.0328	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	VAV2--TRUB2	62	75	VAV2	2729	chr9:136804225:-	TRUB2	44111	chr9:131076168:-	ONLY_REF_SPLICE	YES	149	201	0.48	0.41	0.7123	0.8616	{Klijn_CCL:Breast=1},VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,TRUB2->TruB_pseudouridine_synthase_family_member_2,chr9:131071382-131085021:-	HCC1419_BREAST	0.41	0.48	1.5739	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	PLEC--NDUFAF6	36	157	PLEC	19135	chr8:145007365:-	NDUFAF6	62376	chr8:96060685:+	ONLY_REF_SPLICE	YES	249	1141	0.44	0.14	0.4136	1.8036	PLEC->chr8:144989321-145050902:-,plectin,NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+	HCC1419_BREAST	0.14	0.44	2.2172	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	SLCO4A1--TCEA2	60	28	SLCO4A1	4092	chr20:61290119:+	TCEA2	20634	chr20:62693783:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.6893	0.3217	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,TCEA2->chr20:62681189-62703700:+,transcription_elongation_factor_A2	HCC1419_BREAST	1	1	1.011	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	PLEC--NDUFAF6	6	166	PLEC	18334	chr8:145008166:-	NDUFAF6	61242	chr8:96059222:+	ONLY_REF_SPLICE	YES	581	1384	0.23	0.11	0.0689	1.907	PLEC->chr8:144989321-145050902:-,plectin,NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+	HCC1419_BREAST	0.11	0.23	1.9759	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	STMN3--OSBPL2	46	4	STMN3	1101	chr20:62284680:-	OSBPL2	23698	chr20:60864263:+	ONLY_REF_SPLICE	YES	1	237	0.98	0.17	0.5284	0.046	STMN3->chr20:62271061-62284780:-,stathmin_3,OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2	HCC1419_BREAST	0.17	0.98	0.5744	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	TIMM23B--LINC00843	43	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.494	0.1838	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1419_BREAST	0.98	1	0.6778	TRUE	508	994	45	981	0	FALSE	ACH-000277
HCC1419_BREAST	EIF3H--FAM65C	34	42	EIF3H	7051	chr8:117738255:-	FAM65C	25165	chr20:49247393:-	ONLY_REF_SPLICE	YES	4821	1	0.02	0.99	0.3906	0.4825	EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,FAM65C->chr20:49202645-49308065:-,family_with_sequence_similarity_65_member_C	HCC1419_BREAST	0.02	0.99	0.8731	TRUE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	PLEC--NDUFAF6	3	164	PLEC	19167	chr8:145007333:-	NDUFAF6	62376	chr8:96060685:+	INCL_NON_REF_SPLICE	YES	295	1141	0.36	0.13	0.0345	1.884	PLEC->chr8:144989321-145050902:-,plectin,NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+	HCC1419_BREAST	0.13	0.36	1.9185	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	LRCH1--NADSYN1	32	16	LRCH1	1536	chr13:47127838:+	NADSYN1	32492	chr11:71166156:+	ONLY_REF_SPLICE	YES	6	150	0.89	0.24	0.3676	0.1838	{Klijn_CCL:Breast=1},LRCH1->chr13:47127303-47327175:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_1,NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+	HCC1419_BREAST	0.24	0.89	0.5514	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	RNF139--SPOP	31	17	RNF139	1553	chr8:125487531:+	SPOP	15305	chr17:47700238:-	ONLY_REF_SPLICE	YES	486	659	0.09	0.07	0.3561	0.1953	RNF139->Oncogene{Bushman},chr8:125486979-125500155:+,ring_finger_protein_139,SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein	HCC1419_BREAST	0.07	0.09	0.5514	TRUE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	ZFAND1--PVT1	30	18	ZFAND1	1705	chr8:82644434:-	PVT1	27090	chr8:129001408:+	ONLY_REF_SPLICE	YES	307	27	0.14	0.64	0.3446	0.2068	ZFAND1->chr8:82613569-82645138:-,zinc_finger_AN1-type_containing_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	HCC1419_BREAST	0.14	0.64	0.5514	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	PLXDC1--TAF13	33	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3791	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCC1419_BREAST	1	1	0.3791	TRUE	7	10	0	216	0	FALSE	ACH-000277
HCC1419_BREAST	NDUFAF6--NCOR1	28	17	NDUFAF6	27487	chr8:96087980:+	NCOR1	70058	chr17:15979016:-	ONLY_REF_SPLICE	YES	21	102	0.68	0.31	0.3217	0.1953	NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+,NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1	HCC1419_BREAST	0.31	0.68	0.517	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CCNE2--RMDN1	1	122	CCNE2	4666	chr8:95905046:-	RMDN1	30306	chr8:87487143:-	ONLY_REF_SPLICE	NO	583	176	0.17	0.41	0.0115	1.4015	CCNE2->chr8:95891998-95908906:-,cyclin_E2,RMDN1->chr8:87480486-87526586:-,regulator_of_microtubule_dynamics_1	HCC1419_BREAST	0.17	0.41	1.413	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	TIMM23--RP11-464F9.1	28	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	296	6	0.1	0.84	0.3217	0.046	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC1419_BREAST	0.1	0.84	0.3677	TRUE	519	3926	326	965	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ND4L	3	100	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	61	0	0.63	1	0.0345	1.1488	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1419_BREAST	0.63	1	1.1833	FALSE	344	827	44	306	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ND4L	11	67	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	7999	0	0.01	1	0.1264	0.7697	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1419_BREAST	0.01	1	0.8961	FALSE	344	827	44	306	0	FALSE	ACH-000277
HCC1419_BREAST	ZNF79--RALGPS1	22	22	ZNF79	2791	chr9:130191199:+	RALGPS1	18228	chr9:129796710:+	ONLY_REF_SPLICE	YES	19	9	0.7	0.83	0.2527	0.2527	{Klijn_CCL:Breast=1},ZNF79->chr9:130186661-130207651:+,zinc_finger_protein_79,RALGPS1->Ral_GEF_with_PH_domain_and_SH3_binding_motif_1,chr9:129677053-129985445:+	HCC1419_BREAST	0.7	0.83	0.5054	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	OR51S1--TP53I11	27	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3102	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HCC1419_BREAST	1	1	0.3102	TRUE	402	216	10	229	0	FALSE	ACH-000277
HCC1419_BREAST	RAE1--AC084125.4	23	16	RAE1	5954	chr20:55940498:+	AC084125.4	19730	chr8:145662134:+	ONLY_REF_SPLICE	YES	1003	4	0.04	0.91	0.2642	0.1838	RAE1->chr20:55926066-55954267:+,ribonucleic_acid_export_1,AC084125.4->chr8:145660602-145665354:+	HCC1419_BREAST	0.04	0.91	0.448	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	LDLRAD3--SYT9	25	1	LDLRAD3	1164	chr11:35965694:+	SYT9	20097	chr11:7324270:+	ONLY_REF_SPLICE	YES	1	6	0.96	0.81	0.2872	0.0115	LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,SYT9->chr11:7260009-7490273:+,synaptotagmin_9	HCC1419_BREAST	0.81	0.96	0.2987	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CHD6--CA3	21	12	CHD6	14246	chr20:40120338:-	CA3	53150	chr8:86295183:+	ONLY_REF_SPLICE	YES	88	0	0.27	1	0.2412	0.1379	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,CA3->carbonic_anhydrase_3,chr8:86285665-86361269:+	HCC1419_BREAST	0.27	1	0.3791	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CHD6--SKAP1	20	16	CHD6	32824	chr20:40065914:-	SKAP1	53318	chr17:46474147:-	ONLY_REF_SPLICE	YES	133	0	0.21	1	0.2298	0.1838	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,SKAP1->chr17:46210802-46507637:-,src_kinase_associated_phosphoprotein_1	HCC1419_BREAST	0.21	1	0.4136	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CCNE2--RMDN1	4	78	CCNE2	5802	chr8:95902643:-	RMDN1	30862	chr8:87486587:-	ONLY_REF_SPLICE	YES	292	204	0.22	0.29	0.046	0.8961	CCNE2->chr8:95891998-95908906:-,cyclin_E2,RMDN1->chr8:87480486-87526586:-,regulator_of_microtubule_dynamics_1	HCC1419_BREAST	0.22	0.29	0.9421	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ND4L	3	79	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	8	1	0.91	0.99	0.0345	0.9076	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1419_BREAST	0.91	0.99	0.9421	FALSE	344	826	44	306	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ND4L	4	67	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	8	1	0.9	0.99	0.046	0.7697	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1419_BREAST	0.9	0.99	0.8157	FALSE	344	821	44	306	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ND4L	4	67	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	15	0	0.83	1	0.046	0.7697	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1419_BREAST	0.83	1	0.8157	FALSE	344	826	44	306	0	FALSE	ACH-000277
HCC1419_BREAST	VAV2--TRUB2	1	77	VAV2	2729	chr9:136804225:-	TRUB2	43049	chr9:131077907:-	ONLY_REF_SPLICE	YES	149	204	0.34	0.28	0.0115	0.8846	{Klijn_CCL:Breast=1},VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,TRUB2->TruB_pseudouridine_synthase_family_member_2,chr9:131071382-131085021:-	HCC1419_BREAST	0.28	0.34	0.8961	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	HMGXB4--CTA-714B7.7	15	16	HMGXB4	6887	chr22:35661596:+	CTA-714B7.7	18197	chr22:35518654:+	ONLY_REF_SPLICE	YES	74	0	0.3	1	0.1723	0.1838	HMGXB4->HMG-box_containing_4,chr22:35653445-35691800:+,CTA-714B7.7->chr22:35518654-35523412:+	HCC1419_BREAST	0.3	1	0.3561	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	NRIP1--AF127936.7	19	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2183	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1419_BREAST	1	1	0.2183	FALSE	292	1546	117	613	0	FALSE	ACH-000277
HCC1419_BREAST	RP11-512M8.5--CLIP1	17	8	RP11-512M8.5	2745	chr12:122748119:-	CLIP1	55882	chr12:122758709:-	ONLY_REF_SPLICE	YES	70	199	0.26	0.11	0.1953	0.0919	GTEx_FI:{Brain=[count:3=pct:0.5],Esophagus=[count:2=pct:0.5],Nerve=[count:1=pct:0.6]},LOCAL_REARRANGEMENT:-:[5009],RP11-512M8.5->chr12:122692326-122750970:-,CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-	HCC1419_BREAST	0.11	0.26	0.2872	TRUE	1	10	0	1	7	TRUE	ACH-000277
HCC1419_BREAST	BIRC6--REXO1L1	14	17	BIRC6	65151	chr2:32756618:+	REXO1L1	88770	chr8:86573041:-	INCL_NON_REF_SPLICE	YES	164	5	0.16	0.86	0.1608	0.1953	BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,REXO1L1->chr8:86568695-86575726:-	HCC1419_BREAST	0.16	0.86	0.3561	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	MT-ND6--MT-TE	17	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1953	0.023	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1419_BREAST	0.95	1	0.2183	FALSE	499	1288	110	792	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	17	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1953	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	1	1	0.1953	FALSE	230	193	14	283	0	FALSE	ACH-000277
HCC1419_BREAST	ZNF79--RALGPS1	11	24	ZNF79	2791	chr9:130191199:+	RALGPS1	16926	chr9:129778939:+	ONLY_REF_SPLICE	YES	19	9	0.65	0.8	0.1264	0.2757	{Klijn_CCL:Breast=1},ZNF79->chr9:130186661-130207651:+,zinc_finger_protein_79,RALGPS1->Ral_GEF_with_PH_domain_and_SH3_binding_motif_1,chr9:129677053-129985445:+	HCC1419_BREAST	0.65	0.8	0.4021	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	ZHX1--RP11-398G24.2	15	5	ZHX1	3911	chr8:124279513:-	RP11-398G24.2	15604	chr8:123139385:-	INCL_NON_REF_SPLICE	YES	504	0	0.04	1	0.1723	0.0574	ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,RP11-398G24.2->chr8:122966879-123139423:-	HCC1419_BREAST	0.04	1	0.2297	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ND4L	12	16	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	60	0	0.32	1	0.1379	0.1838	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1419_BREAST	0.32	1	0.3217	FALSE	344	826	44	306	0	FALSE	ACH-000277
HCC1419_BREAST	RAE1--AC084125.4	11	20	RAE1	5954	chr20:55940498:+	AC084125.4	18575	chr8:145660669:+	INCL_NON_REF_SPLICE	YES	1003	0	0.03	1	0.1264	0.2298	RAE1->chr20:55926066-55954267:+,ribonucleic_acid_export_1,AC084125.4->chr8:145660602-145665354:+	HCC1419_BREAST	0.03	1	0.3562	TRUE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	RP11-96H19.1--RP11-446N19.1	12	16	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.1379	0.1838	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1419_BREAST	0.97	1	0.3217	FALSE	515	4851	409	746	0	FALSE	ACH-000277
HCC1419_BREAST	TONSL--STMN3	12	13	TONSL	1563	chr8:145669265:-	STMN3	22217	chr20:62273652:-	ONLY_REF_SPLICE	YES	237	20	0.1	0.56	0.1379	0.1493	{Klijn_CCL:Breast=1},TONSL->chr8:145654165-145669827:-,tonsoku-like,_DNA_repair_protein,STMN3->chr20:62271061-62284780:-,stathmin_3	HCC1419_BREAST	0.1	0.56	0.2872	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	MT-ND6--MT-TE	12	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1379	0.1379	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1419_BREAST	0.96	1	0.2758	FALSE	499	1288	110	792	0	FALSE	ACH-000277
HCC1419_BREAST	MT-TA--MT-TC	15	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1723	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1419_BREAST	1	1	0.1723	FALSE	462	80	0	856	0	FALSE	ACH-000277
HCC1419_BREAST	ZFAND1--PVT1	9	24	ZFAND1	1705	chr8:82644434:-	PVT1	25789	chr8:128996150:+	ONLY_REF_SPLICE	YES	307	32	0.1	0.51	0.1034	0.2757	ZFAND1->chr8:82613569-82645138:-,zinc_finger_AN1-type_containing_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	HCC1419_BREAST	0.1	0.51	0.3791	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	14	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1608	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	1	1	0.1608	FALSE	230	198	14	283	0	FALSE	ACH-000277
HCC1419_BREAST	SLCO4A1--RP13-152O15.5	13	4	SLCO4A1	4092	chr20:61290119:+	RP13-152O15.5	18227	chr20:62688325:+	ONLY_REF_SPLICE	YES	0	2	1	0.89	0.1493	0.046	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,RP13-152O15.5->chr20:62688156-62688437:+	HCC1419_BREAST	0.89	1	0.1953	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	RP11-96H19.1--RP11-446N19.1	9	18	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1034	0.2068	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1419_BREAST	1	1	0.3102	FALSE	407	2205	196	549	0	FALSE	ACH-000277
HCC1419_BREAST	CEP170B--ABHD12B	11	9	CEP170B	2366	chr14:105334892:+	ABHD12B	22622	chr14:51344670:+	ONLY_REF_SPLICE	YES	57	0	0.26	1	0.1264	0.1034	CEP170B->centrosomal_protein_170B,chr14:105331617-105363107:+,ABHD12B->abhydrolase_domain_containing_12B,chr14:51338878-51371688:+	HCC1419_BREAST	0.26	1	0.2298	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	EXT1--UGT8	11	3	EXT1	2769	chr8:119122324:-	UGT8	26461	chr4:115544035:+	ONLY_REF_SPLICE	YES	55	0	0.2	1	0.1264	0.0345	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,UGT8->UDP_glycosyltransferase_8,chr4:115519611-115599380:+	HCC1419_BREAST	0.2	1	0.1609	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CALM3--MT-ND4L	9	10	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1702	0	0.01	1	0.1034	0.1149	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1419_BREAST	0.01	1	0.2183	FALSE	1	1	0	107	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	11	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14230	10	0	0.57	0.1264	0.023	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	0	0.57	0.1494	FALSE	231	205	14	283	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND6--MT-TE	11	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1264	0.023	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1419_BREAST	0.93	1	0.1494	FALSE	499	1288	110	792	0	FALSE	ACH-000277
HCC1419_BREAST	RP11-660L16.2--LRCH1	9	8	RP11-660L16.2	1212	chr11:71159931:+	LRCH1	7217	chr13:47224336:+	ONLY_REF_SPLICE	YES	17	6	0.5	0.74	0.1034	0.0919	RP11-660L16.2->chr11:71159720-71163203:+,LRCH1->chr13:47127303-47327175:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_1	HCC1419_BREAST	0.5	0.74	0.1953	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	8	9	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16520	77	0	0.18	0.0919	0.1034	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	0	0.18	0.1953	FALSE	231	217	16	283	0	FALSE	ACH-000277
HCC1419_BREAST	EIF3H--FAM65C	4	24	EIF3H	3765	chr8:117767905:-	FAM65C	25165	chr20:49247393:-	ONLY_REF_SPLICE	YES	3908	1	0.01	0.97	0.046	0.2757	EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,FAM65C->chr20:49202645-49308065:-,family_with_sequence_similarity_65_member_C	HCC1419_BREAST	0.01	0.97	0.3217	TRUE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ATP6--MT-CO1	10	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1149	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1419_BREAST	1	1	0.1149	FALSE	183	104	9	328	0	FALSE	ACH-000277
HCC1419_BREAST	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1034	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1419_BREAST	1	1	0.1034	TRUE	0	0	0	434	0	FALSE	ACH-000277
HCC1419_BREAST	RIPK2--SPECC1	6	12	RIPK2	4922	chr8:90777724:+	SPECC1	31268	chr17:20107646:+	ONLY_REF_SPLICE	YES	223	387	0.07	0.04	0.0689	0.1379	RIPK2->chr8:90769975-90803291:+,receptor_interacting_serine/threonine_kinase_2,SPECC1->Oncogene{Bushman},chr17:19912657-20222339:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1	HCC1419_BREAST	0.04	0.07	0.2068	TRUE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	6	8	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17188	0	0	1	0.0689	0.0919	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	0	1	0.1608	FALSE	231	217	16	283	0	FALSE	ACH-000277
HCC1419_BREAST	C15orf57--CBX3	7	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	54	50	0.16	0.17	0.0804	0.0345	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1419_BREAST	0.16	0.17	0.1149	TRUE	267	562	48	632	0	FALSE	ACH-000277
HCC1419_BREAST	C15orf57--CBX3	6	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	56	50	0.19	0.21	0.0689	0.0804	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1419_BREAST	0.19	0.21	0.1493	TRUE	267	562	48	632	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ND4L	3	19	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	12308	0	0	1	0.0345	0.2183	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1419_BREAST	0	1	0.2528	FALSE	328	800	43	304	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND6--MT-TE	4	14	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.046	0.1608	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1419_BREAST	0.95	1	0.2068	FALSE	499	1288	110	792	0	FALSE	ACH-000277
HCC1419_BREAST	STMN3--OSBPL2	7	2	STMN3	1101	chr20:62284680:-	OSBPL2	24963	chr20:60866759:+	ONLY_REF_SPLICE	YES	1	288	0.9	0.03	0.0804	0.023	STMN3->chr20:62271061-62284780:-,stathmin_3,OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2	HCC1419_BREAST	0.03	0.9	0.1034	TRUE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	CHD6--CA3	6	5	CHD6	14246	chr20:40120338:-	CA3	55317	chr8:86351941:+	ONLY_REF_SPLICE	YES	88	5	0.11	0.69	0.0689	0.0574	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,CA3->carbonic_anhydrase_3,chr8:86285665-86361269:+	HCC1419_BREAST	0.11	0.69	0.1263	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	MT-TA--MT-TC	7	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0804	0.0115	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1419_BREAST	1	1	0.0919	FALSE	462	80	0	856	0	FALSE	ACH-000277
HCC1419_BREAST	SYS1--HOXB9	6	5	SYS1	4225	chr20:43994326:+	HOXB9	15979	chr17:46700497:-	ONLY_REF_SPLICE	YES	283	0	0.04	1	0.0689	0.0574	SYS1->Sys1_golgi_trafficking_protein,chr20:43990577-44005438:+,HOXB9->chr17:46698518-46703839:-,homeobox_B9	HCC1419_BREAST	0.04	1	0.1263	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	5	8	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	17188	0	0	1	0.0574	0.0919	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	0	1	0.1493	FALSE	231	217	16	283	0	FALSE	ACH-000277
HCC1419_BREAST	TONSL--STMN3	4	11	TONSL	1265	chr8:145669563:-	STMN3	22217	chr20:62273652:-	ONLY_REF_SPLICE	YES	374	20	0.04	0.43	0.046	0.1264	{Klijn_CCL:Breast=1},TONSL->chr8:145654165-145669827:-,tonsoku-like,_DNA_repair_protein,STMN3->chr20:62271061-62284780:-,stathmin_3	HCC1419_BREAST	0.04	0.43	0.1724	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	C2orf82--EIF4E2	6	2	C2orf82	5607	chr2:233741157:+	EIF4E2	14069	chr2:233421126:+	INCL_NON_REF_SPLICE	YES	0	18	1	0.31	0.0689	0.023	C2orf82->chr2:233721980-233743418:+,chromosome_2_open_reading_frame_82,EIF4E2->chr2:233414762-233448354:+,eukaryotic_translation_initiation_factor_4E_family_member_2	HCC1419_BREAST	0.31	1	0.0919	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	DUSP4--RN7SL2	6	2	DUSP4	10153	chr8:29193555:-	RN7SL2	16179	chr14:50329516:-	INCL_NON_REF_SPLICE	YES	1050	0	0.01	1	0.0689	0.023	DUSP4->chr8:29190581-29208185:-,dual_specificity_phosphatase_4,RN7SL2->RNA,_7SL,_cytoplasmic_2,chr14:50329271-50329567:-	HCC1419_BREAST	0.01	1	0.0919	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	NDUFAF6--NCOR1	4	10	NDUFAF6	24465	chr8:96064458:+	NCOR1	70058	chr17:15979016:-	ONLY_REF_SPLICE	YES	577	102	0.02	0.12	0.046	0.1149	NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+,NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1	HCC1419_BREAST	0.02	0.12	0.1609	TRUE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	RP11-37B2.1--LRRC59	6	2	RP11-37B2.1	1683	chr8:90769273:-	LRRC59	23321	chr17:48472349:-	ONLY_REF_SPLICE	YES	21	3231	0.28	0	0.0689	0.023	RP11-37B2.1->chr8:90621638-90769955:-,LRRC59->chr17:48452420-48474914:-,leucine_rich_repeat_containing_59	HCC1419_BREAST	0	0.28	0.0919	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	CEP170B--ABHD12B	6	1	CEP170B	1234	chr14:105331850:+	ABHD12B	22622	chr14:51344670:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0689	0.0115	CEP170B->centrosomal_protein_170B,chr14:105331617-105363107:+,ABHD12B->abhydrolase_domain_containing_12B,chr14:51338878-51371688:+	HCC1419_BREAST	0.78	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	GRB7--ATAD2	6	1	GRB7	8206	chr17:37902455:+	ATAD2	27256	chr8:124361684:-	ONLY_REF_SPLICE	YES	1782	952	0	0.01	0.0689	0.0115	GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7,ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-	HCC1419_BREAST	0	0.01	0.0804	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	3	13	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2350	77	0.01	0.17	0.0345	0.1493	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	0.01	0.17	0.1838	FALSE	216	209	16	281	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ND4L	3	13	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	5	0	0.76	1	0.0345	0.1493	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1419_BREAST	0.76	1	0.1838	FALSE	344	821	44	306	0	FALSE	ACH-000277
HCC1419_BREAST	SYT7--CYB5R2	6	1	SYT7	1359	chr11:61348262:-	CYB5R2	22105	chr11:7695573:-	INCL_NON_REF_SPLICE	YES	0	15	1	0.32	0.0689	0.0115	SYT7->chr11:61282785-61348620:-,synaptotagmin_7,CYB5R2->chr11:7686331-7698453:-,cytochrome_b5_reductase_2	HCC1419_BREAST	0.32	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	ZNF251--TSHZ2	6	1	ZNF251	3735	chr8:145979068:-	TSHZ2	25555	chr20:52111410:+	INCL_NON_REF_SPLICE	YES	396	1	0.02	0.88	0.0689	0.0115	HGNC_GENEFAM,ZNF251->chr8:145946298-145981802:-,zinc_finger_protein_251,TSHZ2->chr20:51588946-52111869:+,teashirt_zinc_finger_homeobox_2	HCC1419_BREAST	0.02	0.88	0.0804	TRUE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	3	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14929	77	0	0.16	0.0345	0.1379	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	0	0.16	0.1724	FALSE	231	217	16	283	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	3	12	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	16863	0	0	1	0.0345	0.1379	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	0	1	0.1724	FALSE	231	217	16	283	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	4	8	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	17031	1588	0	0.01	0.046	0.0919	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	0	0.01	0.1379	FALSE	231	217	16	283	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	3	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	14929	227	0	0.06	0.0345	0.1379	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	0	0.06	0.1724	FALSE	231	217	16	283	0	FALSE	ACH-000277
HCC1419_BREAST	RP11-96H19.1--RP11-446N19.1	2	16	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.95	0.023	0.1838	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1419_BREAST	0.95	1	0.2068	FALSE	467	2173	244	435	0	FALSE	ACH-000277
HCC1419_BREAST	SYS1--HOXB7	5	4	SYS1	4225	chr20:43994326:+	HOXB7	17043	chr17:46685457:-	ONLY_REF_SPLICE	YES	283	0	0.03	1	0.0574	0.046	SYS1->Sys1_golgi_trafficking_protein,chr20:43990577-44005438:+,HOXB7->chr17:46684594-46710934:-,homeobox_B7	HCC1419_BREAST	0.03	1	0.1034	TRUE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	VAV2--TRUB2	2	15	VAV2	1530	chr9:136857197:-	TRUB2	44111	chr9:131076168:-	ONLY_REF_SPLICE	YES	119	201	0.12	0.08	0.023	0.1723	{Klijn_CCL:Breast=1},VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,TRUB2->TruB_pseudouridine_synthase_family_member_2,chr9:131071382-131085021:-	HCC1419_BREAST	0.08	0.12	0.1953	TRUE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ATP6--MT-CO1	5	2	MT-ATP6	1287	chrM:8813:+	MT-CO1	4991	chrM:6213:+	INCL_NON_REF_SPLICE	NO	18667	21461	0	0	0.0574	0.023	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1419_BREAST	0	0	0.0804	FALSE	183	104	9	328	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	3	10	MT-ND4	2103	chrM:11862:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	11682	535	0	0.02	0.0345	0.1149	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	0	0.02	0.1494	FALSE	231	215	16	283	0	FALSE	ACH-000277
HCC1419_BREAST	RP11-96H19.1--RP11-446N19.1	1	18	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0.2068	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1419_BREAST	1	1	0.2183	FALSE	275	511	55	178	0	FALSE	ACH-000277
HCC1419_BREAST	CEP170B--ABHD12B	5	1	CEP170B	1234	chr14:105331850:+	ABHD12B	24518	chr14:51347170:+	ONLY_REF_SPLICE	YES	2	10	0.75	0.38	0.0574	0.0115	CEP170B->centrosomal_protein_170B,chr14:105331617-105363107:+,ABHD12B->abhydrolase_domain_containing_12B,chr14:51338878-51371688:+	HCC1419_BREAST	0.38	0.75	0.0689	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	HMGXB4--CTA-714B7.7	3	9	HMGXB4	6887	chr22:35661596:+	CTA-714B7.7	19283	chr22:35523135:+	ONLY_REF_SPLICE	YES	74	0	0.14	1	0.0345	0.1034	HMGXB4->HMG-box_containing_4,chr22:35653445-35691800:+,CTA-714B7.7->chr22:35518654-35523412:+	HCC1419_BREAST	0.14	1	0.1379	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	3	9	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	17772	0	0	1	0.0345	0.1034	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	0	1	0.1379	FALSE	231	217	16	283	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ND4L	5	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.86	0.0574	0.0115	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1419_BREAST	0.86	1	0.0689	FALSE	344	821	44	306	0	FALSE	ACH-000277
HCC1419_BREAST	MT-TA--MT-TC	5	1	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0.0115	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1419_BREAST	1	1	0.0689	FALSE	462	80	0	856	0	FALSE	ACH-000277
HCC1419_BREAST	TRAF3--ZNF839	5	1	TRAF3	1200	chr14:103244012:+	ZNF839	30942	chr14:102797959:+	ONLY_REF_SPLICE	YES	0	39	1	0.13	0.0574	0.0115	TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+,ZNF839->chr14:102783714-102809044:+,zinc_finger_protein_839	HCC1419_BREAST	0.13	1	0.0689	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	ZFAND1--PVT1	4	5	ZFAND1	1151	chr8:82644988:-	PVT1	25789	chr8:128996150:+	ONLY_REF_SPLICE	YES	63	32	0.12	0.22	0.046	0.0574	ZFAND1->chr8:82613569-82645138:-,zinc_finger_AN1-type_containing_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	HCC1419_BREAST	0.12	0.22	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	IFT43--SERPINA4	3	8	IFT43	3738	chr14:76455320:+	SERPINA4	17662	chr14:95029803:+	ONLY_REF_SPLICE	YES	168	0	0.06	1	0.0345	0.0919	IFT43->chr14:76368479-76550928:+,intraflagellar_transport_43,SERPINA4->chr14:95027428-95036250:+,serpin_family_A_member_4	HCC1419_BREAST	0.06	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	MT-ATP6--MT-CO1	5	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1419_BREAST	1	1	0.0574	FALSE	183	104	9	328	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ATP6--MT-CO1	5	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1419_BREAST	1	1	0.0574	FALSE	183	104	9	328	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	3	8	MT-ND4	1566	chrM:11325:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18736	77	0	0.12	0.0345	0.0919	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	0	0.12	0.1264	FALSE	231	217	16	283	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	1	1	0.0574	FALSE	231	205	14	283	0	FALSE	ACH-000277
HCC1419_BREAST	NDUFAF6--NCOR1	3	8	NDUFAF6	23408	chr8:96060786:+	NCOR1	70058	chr17:15979016:-	ONLY_REF_SPLICE	NO	833	102	0.01	0.1	0.0345	0.0919	NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+,NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1	HCC1419_BREAST	0.01	0.1	0.1264	TRUE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	NRIP1--AF127936.7	4	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	28	0	0.2	1	0.046	0.0345	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1419_BREAST	0.2	1	0.0805	FALSE	164	806	69	479	0	FALSE	ACH-000277
HCC1419_BREAST	EXT1--COL14A1	3	6	EXT1	4971	chr8:118847683:-	COL14A1	28824	chr8:121160045:+	ONLY_REF_SPLICE	YES	51	0	0.15	1	0.0345	0.0689	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	HCC1419_BREAST	0.15	1	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	3	6	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17870	77	0	0.1	0.0345	0.0689	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	0	0.1	0.1034	FALSE	231	217	16	283	0	FALSE	ACH-000277
HCC1419_BREAST	TTC6--MIPOL1	4	2	TTC6	1162	chr14:38065213:+	MIPOL1	61096	chr14:37716308:+	ONLY_REF_SPLICE	YES	5	26	0.55	0.19	0.046	0.023	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	HCC1419_BREAST	0.19	0.55	0.069	TRUE	0	0	0	2	0	TRUE	ACH-000277
HCC1419_BREAST	MT-ND6--MT-TE	3	5	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.0345	0.0574	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1419_BREAST	0.73	1	0.0919	FALSE	499	1288	110	792	0	FALSE	ACH-000277
HCC1419_BREAST	NRIP1--AF127936.7	4	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.046	0.0115	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1419_BREAST	0.26	1	0.0575	FALSE	125	705	46	456	0	FALSE	ACH-000277
HCC1419_BREAST	STARD3--TAC4	1	13	STARD3	1167	chr17:37793484:+	TAC4	19674	chr17:47916035:-	ONLY_REF_SPLICE	NO	426	19	0.03	0.42	0.0115	0.1493	STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+,TAC4->chr17:47915671-47925379:-,tachykinin_4_(hemokinin)	HCC1419_BREAST	0.03	0.42	0.1608	TRUE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	YY1--SIX4	3	5	YY1	4850	chr14:100741095:+	SIX4	18442	chr14:61187163:-	ONLY_REF_SPLICE	YES	234	43	0.03	0.16	0.0345	0.0574	YY1->YY1_transcription_factor,chr14:100704635-100749129:+,SIX4->Oncogene{Bushman},SIX_homeobox_4,chr14:61176246-61191066:-	HCC1419_BREAST	0.03	0.16	0.0919	TRUE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ATP6--MT-CO1	4	0	MT-ATP6	1112	chrM:8638:+	MT-CO1	5325	chrM:6547:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1419_BREAST	1	1	0.046	FALSE	183	104	9	328	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ATP6--MT-CO1	4	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1419_BREAST	1	1	0.046	FALSE	183	104	9	328	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	1	1	0.046	FALSE	231	204	14	283	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1244	chrM:11003:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	1	1	0.046	FALSE	231	204	14	283	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	3	4	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	17476	1588	0	0	0.0345	0.046	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	0	0	0.0805	FALSE	231	205	14	283	0	FALSE	ACH-000277
HCC1419_BREAST	RIMS2--LINC00534	4	0	RIMS2	26367	chr8:105001649:+	LINC00534	54670	chr8:91466637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.046	0	RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2,LINC00534->chr8:91233716-91581546:+,long_intergenic_non-protein_coding_RNA_534	HCC1419_BREAST	1	1	0.046	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	SLCO4A1--TCEA2	3	3	SLCO4A1	4092	chr20:61290119:+	TCEA2	24483	chr20:62697829:+	ONLY_REF_SPLICE	YES	0	71	1	0.08	0.0345	0.0345	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,TCEA2->chr20:62681189-62703700:+,transcription_elongation_factor_A2	HCC1419_BREAST	0.08	1	0.069	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CCNE2--RMDN1	3	2	CCNE2	5802	chr8:95902643:-	RMDN1	33873	chr8:87482639:-	ONLY_REF_SPLICE	YES	292	13	0.02	0.28	0.0345	0.023	CCNE2->chr8:95891998-95908906:-,cyclin_E2,RMDN1->chr8:87480486-87526586:-,regulator_of_microtubule_dynamics_1	HCC1419_BREAST	0.02	0.28	0.0575	TRUE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	CEP170B--ABHD12B	2	5	CEP170B	2366	chr14:105334892:+	ABHD12B	24518	chr14:51347170:+	ONLY_REF_SPLICE	YES	57	10	0.11	0.41	0.023	0.0574	CEP170B->centrosomal_protein_170B,chr14:105331617-105363107:+,ABHD12B->abhydrolase_domain_containing_12B,chr14:51338878-51371688:+	HCC1419_BREAST	0.11	0.41	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CEP170B--ABHD12B	2	5	CEP170B	2366	chr14:105334892:+	ABHD12B	23415	chr14:51345463:+	ONLY_REF_SPLICE	YES	57	4	0.11	0.64	0.023	0.0574	CEP170B->centrosomal_protein_170B,chr14:105331617-105363107:+,ABHD12B->abhydrolase_domain_containing_12B,chr14:51338878-51371688:+	HCC1419_BREAST	0.11	0.64	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	AC003665.1--TMEM67	3	0	AC003665.1	2195	chr17:45995818:-	TMEM67	10179	chr8:94768006:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	AC003665.1->chr17:45974696-46018776:-,TMEM67->chr8:94767072-94831462:+,transmembrane_protein_67	HCC1419_BREAST	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	ANP32B--APP	3	0	ANP32B	8117	chr9:100773588:+	APP	24379	chr21:27394302:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	HCC1419_BREAST	1	1	0.0345	TRUE	0	0	0	7	0	TRUE	ACH-000277
HCC1419_BREAST	DYNLL1--ATF4	3	0	DYNLL1	5842	chr12:120934013:+	ATF4	12067	chr22:39916641:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	DYNLL1->chr12:120907653-120936296:+,dynein_light_chain_LC8-type_1,ATF4->Oncogene{Bushman},activating_transcription_factor_4,chr22:39915700-39918691:+	HCC1419_BREAST	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	LDLRAD3--SYT9	3	0	LDLRAD3	1164	chr11:35965694:+	SYT9	21449	chr11:7334626:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,SYT9->chr11:7260009-7490273:+,synaptotagmin_9	HCC1419_BREAST	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	MAEA--CTBP1	3	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HCC1419_BREAST	1	1	0.0345	TRUE	3	14	2	43	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1419_BREAST	1	1	0.0345	FALSE	183	104	9	328	0	FALSE	ACH-000277
HCC1419_BREAST	MT-CO1--DERL1	3	0	MT-CO1	1600	chrM:6503:+	DERL1	17167	chr8:124027386:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,DERL1->chr8:124025404-124054663:-,derlin_1	HCC1419_BREAST	1	1	0.0345	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	1	1	0.0345	FALSE	231	204	14	283	0	FALSE	ACH-000277
HCC1419_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1419_BREAST	1	1	0.0345	FALSE	231	204	14	283	0	FALSE	ACH-000277
HCC1419_BREAST	NDUFAF6--CDH17	2	4	NDUFAF6	27487	chr8:96087980:+	CDH17	40523	chr8:95201513:-	ONLY_REF_SPLICE	YES	21	0	0.22	1	0.023	0.046	NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+,CDH17->cadherin_17,chr8:95139399-95229531:-	HCC1419_BREAST	0.22	1	0.069	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1419_BREAST	1	1	0.0345	TRUE	0	0	0	434	0	FALSE	ACH-000277
HCC1419_BREAST	RIPK2--SPECC1	1	8	RIPK2	1487	chr8:90770461:+	SPECC1	31268	chr17:20107646:+	ONLY_REF_SPLICE	YES	318	387	0.03	0.02	0.0115	0.0919	RIPK2->chr8:90769975-90803291:+,receptor_interacting_serine/threonine_kinase_2,SPECC1->Oncogene{Bushman},chr17:19912657-20222339:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1	HCC1419_BREAST	0.02	0.03	0.1034	TRUE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	SLCO4A1--TCEA2	3	0	SLCO4A1	1109	chr20:61273905:+	TCEA2	20634	chr20:62693783:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,TCEA2->chr20:62681189-62703700:+,transcription_elongation_factor_A2	HCC1419_BREAST	1	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	ZFAND1--PVT1	2	4	ZFAND1	1151	chr8:82644988:-	PVT1	27090	chr8:129001408:+	ONLY_REF_SPLICE	YES	63	27	0.09	0.18	0.023	0.046	ZFAND1->chr8:82613569-82645138:-,zinc_finger_AN1-type_containing_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	HCC1419_BREAST	0.09	0.18	0.069	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CHMP4C--CDK12	1	7	CHMP4C	1383	chr8:82645051:+	CDK12	32873	chr17:37700502:+	ONLY_REF_SPLICE	NO	1433	6	0.01	0.57	0.0115	0.0804	CHMP4C->charged_multivesicular_body_protein_4C,chr8:82644669-82671750:+,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	HCC1419_BREAST	0.01	0.57	0.0919	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	NDUFAF6--CDH17	1	7	NDUFAF6	32420	chr8:96127965:+	CDH17	40523	chr8:95201513:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0115	0.0804	NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+,CDH17->cadherin_17,chr8:95139399-95229531:-	HCC1419_BREAST	0.89	1	0.0919	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	RP11-512M8.5--CLIP1	1	7	RP11-512M8.5	2745	chr12:122748119:-	CLIP1	55901	chr12:122758690:-	ONLY_REF_SPLICE	YES	70	180	0.1	0.04	0.0115	0.0804	GTEx_FI:{Brain=[count:3=pct:0.5],Esophagus=[count:2=pct:0.5],Nerve=[count:1=pct:0.6]},LOCAL_REARRANGEMENT:-:[5009],RP11-512M8.5->chr12:122692326-122750970:-,CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-	HCC1419_BREAST	0.04	0.1	0.0919	TRUE	1	10	0	1	7	TRUE	ACH-000277
HCC1419_BREAST	TADA2B--SORCS2	2	3	TADA2B	2647	chr4:7045576:+	SORCS2	15529	chr4:7533257:+	ONLY_REF_SPLICE	YES	98	0	0.05	1	0.023	0.0345	GTEx_FI:{Brain=[count:74=pct:11.2],Blood_Vessel=[count:12=pct:3.3],Nerve=[count:8=pct:4.7],Muscle=[count:6=pct:2.6],Pancreas=[count:5=pct:2.8],Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:3=pct:5.7],Breast=[count:2=pct:1.8],Skin=[count:2=pct:0.6],Thyroid=[count:2=pct:1.1],Colon=[count:2=pct:1.0],Uterus=[count:2=pct:4.7],Testis=[count:1=pct:1.0],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},TADA2B->chr4:7043626-7059679:+,transcriptional_adaptor_2B,SORCS2->chr4:7194265-7744554:+,sortilin_related_VPS10_domain_containing_receptor_2	HCC1419_BREAST	0.05	1	0.0575	TRUE	11	12	1	1	0	FALSE	ACH-000277
HCC1419_BREAST	C2orf82--EIF4E2	2	1	C2orf82	5282	chr2:233740832:+	EIF4E2	14069	chr2:233421126:+	ONLY_REF_SPLICE	YES	0	18	1	0.14	0.023	0.0115	C2orf82->chr2:233721980-233743418:+,chromosome_2_open_reading_frame_82,EIF4E2->chr2:233414762-233448354:+,eukaryotic_translation_initiation_factor_4E_family_member_2	HCC1419_BREAST	0.14	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CEP170B--ABHD12B	2	1	CEP170B	1234	chr14:105331850:+	ABHD12B	23415	chr14:51345463:+	ONLY_REF_SPLICE	YES	2	4	0.6	0.43	0.023	0.0115	CEP170B->centrosomal_protein_170B,chr14:105331617-105363107:+,ABHD12B->abhydrolase_domain_containing_12B,chr14:51338878-51371688:+	HCC1419_BREAST	0.43	0.6	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	GRB7--ATAD2	2	1	GRB7	8206	chr17:37902455:+	ATAD2	27279	chr8:124361661:-	ONLY_REF_SPLICE	YES	1782	755	0	0	0.023	0.0115	GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7,ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-	HCC1419_BREAST	0	0	0.0345	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	HP1BP3--CAPZB	2	1	HP1BP3	1129	chr1:21113688:-	CAPZB	26857	chr1:19746244:-	ONLY_REF_SPLICE	YES	33	161	0.08	0.02	0.023	0.0115	GTEx_FI:{Small_Intestine=[count:1=pct:1.8],Blood=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	HCC1419_BREAST	0.02	0.08	0.0345	TRUE	3	0	0	4	0	FALSE	ACH-000277
HCC1419_BREAST	NCOR2--UBC	2	1	NCOR2	11484	chr12:124934361:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	67	232	0.04	0.01	0.023	0.0115	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HCC1419_BREAST	0.01	0.04	0.0345	FALSE	12	15	2	11	0	FALSE	ACH-000277
HCC1419_BREAST	OPLAH--SPAG1	2	1	OPLAH	10943	chr8:145106630:-	SPAG1	32368	chr8:101251468:+	ONLY_REF_SPLICE	NO	17	1019	0.15	0	0.023	0.0115	OPLAH->5-oxoprolinase_(ATP-hydrolysing),chr8:145106167-145118735:-,SPAG1->chr8:101170134-101271506:+,sperm_associated_antigen_1	HCC1419_BREAST	0	0.15	0.0345	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	RIMS2--LINC00534	2	1	RIMS2	26367	chr8:105001649:+	LINC00534	51965	chr8:91363769:+	ONLY_REF_SPLICE	YES	38	0	0.07	1	0.023	0.0115	RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2,LINC00534->chr8:91233716-91581546:+,long_intergenic_non-protein_coding_RNA_534	HCC1419_BREAST	0.07	1	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	AC139100.2--TXNL4A	2	0	AC139100.2	1331	chr18:77906137:+	TXNL4A	21236	chr18:77737701:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	AC139100.2->chr18:77905807-77936315:+,TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CCDC77--LDLR	2	0	CCDC77	14934	chr12:547720:+	LDLR	27491	chr19:11215896:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77,LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	HCC1419_BREAST	1	1	0.023	TRUE	2	8	0	24	0	FALSE	ACH-000277
HCC1419_BREAST	EIF3A--PCMTD2	2	0	EIF3A	15164	chr10:120809313:-	PCMTD2	29115	chr20:62891295:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	EIF3A->Oncogene{Bushman},chr10:120794356-120840316:-,eukaryotic_translation_initiation_factor_3_subunit_A,PCMTD2->chr20:62887094-62926855:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_2	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	ERBB4--FUS	2	0	ERBB4	1393	chr2:213403173:-	FUS	53122	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	{Klijn_CCL:Lung=1},ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	FRYL--DCUN1D4	2	0	FRYL	1245	chr4:48782095:-	DCUN1D4	88332	chr4:52729603:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,DCUN1D4->chr4:52709166-52783003:+,defective_in_cullin_neddylation_1_domain_containing_4	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	HP1BP3--CAPZB	2	0	HP1BP3	1129	chr1:21113688:-	CAPZB	29240	chr1:19705147:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx_FI:{Small_Intestine=[count:1=pct:1.8],Blood=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	RNF19A--YWHAZ	2	0	RNF19A	4601	chr8:101322095:-	YWHAZ	30941	chr8:101937267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	RNF19A->chr8:101269288-101348446:-,ring_finger_protein_19A,_RBR_E3_ubiquitin_protein_ligase,YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	SLCO4A1--TCEA2	2	0	SLCO4A1	1109	chr20:61273905:+	TCEA2	24483	chr20:62697829:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,TCEA2->chr20:62681189-62703700:+,transcription_elongation_factor_A2	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	SNW1--GLRX5	2	0	SNW1	1094	chr14:78227457:-	GLRX5	21258	chr14:96010284:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	SNW1->SNW_domain_containing_1,chr14:78183942-78227550:-,GLRX5->chr14:95999840-96011061:+,glutaredoxin_5	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1419_BREAST	1	1	0.023	TRUE	62	24	1	171	0	FALSE	ACH-000277
HCC1419_BREAST	TMTC2--GRB7	2	0	TMTC2	1790	chr12:83081448:+	GRB7	27488	chr17:37898505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	TMTC2->chr12:83080659-83528649:+,transmembrane_and_tetratricopeptide_repeat_containing_2,GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7	HCC1419_BREAST	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000277
HCC1419_BREAST	PDP1--SAMD12	1	3	PDP1	2613	chr8:94929307:+	SAMD12	17815	chr8:119391939:-	ONLY_REF_SPLICE	YES	608	5	0.01	0.44	0.0115	0.0345	PDP1->chr8:94870035-94938294:+,pyruvate_dehyrogenase_phosphatase_catalytic_subunit_1,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	HCC1419_BREAST	0.01	0.44	0.046	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	TADA2B--SORCS2	1	3	TADA2B	2647	chr4:7045576:+	SORCS2	14461	chr4:7398015:+	ONLY_REF_SPLICE	YES	98	0	0.04	1	0.0115	0.0345	GTEx_FI:{Brain=[count:74=pct:11.2],Blood_Vessel=[count:12=pct:3.3],Nerve=[count:8=pct:4.7],Muscle=[count:6=pct:2.6],Pancreas=[count:5=pct:2.8],Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:3=pct:5.7],Breast=[count:2=pct:1.8],Skin=[count:2=pct:0.6],Thyroid=[count:2=pct:1.1],Colon=[count:2=pct:1.0],Uterus=[count:2=pct:4.7],Testis=[count:1=pct:1.0],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},TADA2B->chr4:7043626-7059679:+,transcriptional_adaptor_2B,SORCS2->chr4:7194265-7744554:+,sortilin_related_VPS10_domain_containing_receptor_2	HCC1419_BREAST	0.04	1	0.046	TRUE	95	84	3	6	0	FALSE	ACH-000277
HCC1419_BREAST	RP11-37B2.1--LRRC59	1	2	RP11-37B2.1	4506	chr8:90736857:-	LRRC59	23321	chr17:48472349:-	ONLY_REF_SPLICE	NO	14	3231	0.18	0	0.0115	0.023	RP11-37B2.1->chr8:90621638-90769955:-,LRRC59->chr17:48452420-48474914:-,leucine_rich_repeat_containing_59	HCC1419_BREAST	0	0.18	0.0345	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	ATP8A2P1--ANKRD30A	1	1	ATP8A2P1	3907	chr10:37553565:+	ANKRD30A	41384	chr10:37505109:+	ONLY_REF_SPLICE	NO	17	49	0.11	0.04	0.0115	0.0115	NEIGHBORS_OVERLAP:+:+:[67683],ATP8A2P1->ATPase_phospholipid_transporting_8A2_pseudogene_1,chr10:37537046-37604729:+,ANKRD30A->ankyrin_repeat_domain_30A,chr10:37414785-37673039:+	HCC1419_BREAST	0.04	0.11	0.023	FALSE	0	3	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	ATXN1--SEPT9	1	1	ATXN1	1194	chr6:16761529:-	SEPT9	66082	chr17:75483506:+	ONLY_REF_SPLICE	NO	217	626	0.01	0	0.0115	0.0115	ATXN1->ataxin_1,chr6:16299343-16761722:-,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	HCC1419_BREAST	0	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	C11orf73--PICALM	1	1	C11orf73	3558	chr11:86017524:+	PICALM	14527	chr11:85742653:-	ONLY_REF_SPLICE	YES	76	153	0.03	0.01	0.0115	0.0115	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1},C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	HCC1419_BREAST	0.01	0.03	0.023	FALSE	1	2	0	10	0	FALSE	ACH-000277
HCC1419_BREAST	C9orf85--ABHD17B	1	1	C9orf85	1327	chr9:74526752:+	ABHD17B	16272	chr9:74489999:-	ONLY_REF_SPLICE	YES	76	48	0.03	0.04	0.0115	0.0115	LOCAL_INVERSION:+:-:[579],C9orf85->chr9:74526426-74600970:+,chromosome_9_open_reading_frame_85,ABHD17B->abhydrolase_domain_containing_17B,chr9:74477368-74525847:-	HCC1419_BREAST	0.03	0.04	0.023	TRUE	1	0	0	2	0	FALSE	ACH-000277
HCC1419_BREAST	EDF1--BAIAP2	1	1	EDF1	3072	chr9:139757358:-	BAIAP2	17908	chr17:79058632:+	ONLY_REF_SPLICE	YES	1409	545	0	0	0.0115	0.0115	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+	HCC1419_BREAST	0	0	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	KCNB1--STX16	1	1	KCNB1	1734	chr20:48098451:-	STX16	18887	chr20:57234679:+	ONLY_REF_SPLICE	YES	1	1046	0.67	0	0.0115	0.0115	KCNB1->chr20:47980414-48099184:-,potassium_voltage-gated_channel_subfamily_B_member_1,STX16->chr20:57226328-57254582:+,syntaxin_16	HCC1419_BREAST	0	0.67	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	KCNB1--STX16	1	1	KCNB1	1734	chr20:48098451:-	STX16	20188	chr20:57242546:+	ONLY_REF_SPLICE	YES	1	1038	0.67	0	0.0115	0.0115	KCNB1->chr20:47980414-48099184:-,potassium_voltage-gated_channel_subfamily_B_member_1,STX16->chr20:57226328-57254582:+,syntaxin_16	HCC1419_BREAST	0	0.67	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	NCOR2--UBC	1	1	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	86	232	0.02	0.01	0.0115	0.0115	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HCC1419_BREAST	0.01	0.02	0.023	FALSE	52	148	13	33	0	FALSE	ACH-000277
HCC1419_BREAST	NCOR2--UBC	1	1	NCOR2	21671	chr12:124882665:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	63	232	0.03	0.01	0.0115	0.0115	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HCC1419_BREAST	0.01	0.03	0.023	FALSE	30	26	0	16	0	FALSE	ACH-000277
HCC1419_BREAST	NDUFAF6--CDH17	1	1	NDUFAF6	24465	chr8:96064458:+	CDH17	40523	chr8:95201513:-	ONLY_REF_SPLICE	NO	577	0	0	1	0.0115	0.0115	NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+,CDH17->cadherin_17,chr8:95139399-95229531:-	HCC1419_BREAST	0	1	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	PILRB--GATS	1	1	PILRB	2935	chr7:99936512:+	GATS	25912	chr7:99810756:-	ONLY_REF_SPLICE	NO	61	8	0.03	0.2	0.0115	0.0115	GTEx&tcga_normals:22/3694=0.60%,GTEx_FI:{Muscle=[count:2=pct:0.9],Brain=[count:1=pct:0.2]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellum=1},LOCAL_INVERSION:+:-,chr7:[63900],PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta,GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-	HCC1419_BREAST	0.03	0.2	0.023	TRUE	3	7	0	3	0	FALSE	ACH-000277
HCC1419_BREAST	PTBP3--KIAA0368	1	1	PTBP3	1198	chr9:115095750:-	KIAA0368	27893	chr9:114213835:-	ONLY_REF_SPLICE	YES	365	33	0.01	0.06	0.0115	0.0115	PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,KIAA0368->KIAA0368,chr9:114122972-114247025:-	HCC1419_BREAST	0.01	0.06	0.023	FALSE	0	0	0	3	0	FALSE	ACH-000277
HCC1419_BREAST	RAD21--NCL	1	1	RAD21	13005	chr8:117862857:-	NCL	24836	chr2:232326728:-	ONLY_REF_SPLICE	NO	2453	2385	0	0	0.0115	0.0115	GTEx&tcga_normals:1/3694=0.03%,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-,NCL->chr2:232318242-232348352:-,nucleolin	HCC1419_BREAST	0	0	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	RP11-357C3.3--ARHGEF9	1	1	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	27535	chrX:62898452:-	ONLY_REF_SPLICE	NO	98	38	0.02	0.05	0.0115	0.0115	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	HCC1419_BREAST	0.02	0.05	0.023	TRUE	0	2	0	6	0	FALSE	ACH-000277
HCC1419_BREAST	RPAIN--RABEP1	1	1	RPAIN	2822	chr17:5324786:+	RABEP1	22415	chr17:5241314:+	ONLY_REF_SPLICE	YES	339	562	0.01	0	0.0115	0.0115	LOCAL_REARRANGEMENT:+:[33832],RPAIN->RPA_interacting_protein,chr17:5322961-5336196:+,RABEP1->Oncogene{Bushman},chr17:5185558-5289129:+,rabaptin,_RAB_GTPase_binding_effector_protein_1	HCC1419_BREAST	0	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	SPAG5--SUPT6H	1	1	SPAG5	1770	chr17:26925528:-	SUPT6H	39683	chr17:27023862:+	ONLY_REF_SPLICE	YES	942	992	0	0	0.0115	0.0115	LOCAL_INVERSION:-:+:[62812],SPAG5->chr17:26904588-26926297:-,sperm_associated_antigen_5,SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+	HCC1419_BREAST	0	0	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	TRAPPC9--KCNK9	1	1	TRAPPC9	62620	chr8:140744222:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	NO	136	0	0.01	1	0.0115	0.0115	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	HCC1419_BREAST	0.01	1	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	UGDH--SMIM14	1	1	UGDH	2029	chr4:39528903:-	SMIM14	19868	chr4:39606800:-	ONLY_REF_SPLICE	YES	2034	841	0	0	0.0115	0.0115	LOCAL_REARRANGEMENT:-:[18019],UGDH->UDP-glucose_6-dehydrogenase,chr4:39500375-39529931:-,SMIM14->chr4:39547950-39640710:-,small_integral_membrane_protein_14	HCC1419_BREAST	0	0	0.023	FALSE	0	1	0	4	0	FALSE	ACH-000277
HCC1419_BREAST	UGDH--SMIM14	1	1	UGDH	2029	chr4:39528903:-	SMIM14	23051	chr4:39558190:-	ONLY_REF_SPLICE	YES	2034	964	0	0	0.0115	0.0115	LOCAL_REARRANGEMENT:-:[18019],UGDH->UDP-glucose_6-dehydrogenase,chr4:39500375-39529931:-,SMIM14->chr4:39547950-39640710:-,small_integral_membrane_protein_14	HCC1419_BREAST	0	0	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	UGDH--SMIM14	1	1	UGDH	9933	chr4:39506857:-	SMIM14	23051	chr4:39558190:-	ONLY_REF_SPLICE	NO	2034	964	0	0	0.0115	0.0115	LOCAL_REARRANGEMENT:-:[18019],UGDH->UDP-glucose_6-dehydrogenase,chr4:39500375-39529931:-,SMIM14->chr4:39547950-39640710:-,small_integral_membrane_protein_14	HCC1419_BREAST	0	0	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000277
HCC1419_BREAST	USO1--G3BP2	1	1	USO1	1293	chr4:76650069:+	G3BP2	34605	chr4:76587233:-	ONLY_REF_SPLICE	YES	67	722	0.03	0	0.0115	0.0115	LOCAL_INVERSION:+:-:[68],USO1->USO1_vesicle_transport_factor,chr4:76649777-76735382:+,G3BP2->G3BP_stress_granule_assembly_factor_2,chr4:76567966-76649709:-	HCC1419_BREAST	0	0.03	0.023	FALSE	0	0	0	3	0	FALSE	ACH-000277
HCC1419_BREAST	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	1977	62	0	0.03	0.0115	0.0115	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	HCC1419_BREAST	0	0.03	0.023	FALSE	6	50	7	115	0	FALSE	ACH-000277
LMSU_STOMACH	SMYD3--RP11-439E19.8	272	76	SMYD3	3707	chr1:246580598:-	RP11-439E19.8	36724	chr1:246973335:-	ONLY_REF_SPLICE	YES	128	0	0.73	1	3.8109	1.0648	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,RP11-439E19.8->chr1:246935139-246993361:-	LMSU_STOMACH	0.73	1	4.8757	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	VMP1--MRC2	112	69	VMP1	10238	chr17:57851246:+	MRC2	24686	chr17:60741909:+	ONLY_REF_SPLICE	YES	100	65	0.64	0.74	1.5692	0.9667	VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2	LMSU_STOMACH	0.64	0.74	2.5359	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	TIMM23B--LINC00843	99	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3871	0.2662	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LMSU_STOMACH	1	1	1.6533	TRUE	508	994	45	981	0	FALSE	ACH-000255
LMSU_STOMACH	ZNF654--HMGB2	82	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1489	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LMSU_STOMACH	1	1	1.1489	TRUE	0	0	0	518	0	FALSE	ACH-000255
LMSU_STOMACH	TIMM23--RP11-464F9.1	64	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	189	1	0.26	0.98	0.8967	0.014	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LMSU_STOMACH	0.26	0.98	0.9107	TRUE	519	3926	326	965	0	FALSE	ACH-000255
LMSU_STOMACH	AP003900.6--AC011718.2	56	8	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.7846	0.1121	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LMSU_STOMACH	1	1	0.8967	TRUE	0	3	0	38	3	FALSE	ACH-000255
LMSU_STOMACH	ADAMTS2--RP11-798K23.4	40	24	ADAMTS2	2636	chr5:178770768:-	RP11-798K23.4	32863	chr5:178930741:-	ONLY_REF_SPLICE	YES	10	0	0.86	1	0.5604	0.3363	GTEx_FI:{Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},ADAMTS2->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_2,chr5:178537852-178772431:-,RP11-798K23.4->chr5:178930323-178942580:-	LMSU_STOMACH	0.86	1	0.8967	TRUE	1	3	0	2	3	TRUE	ACH-000255
LMSU_STOMACH	AP003900.6--AC011718.2	37	24	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.5184	0.3363	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LMSU_STOMACH	0.98	1	0.8547	TRUE	0	5	0	45	5	FALSE	ACH-000255
LMSU_STOMACH	CD44--PDHX	33	8	CD44	1501	chr11:35160917:+	PDHX	33796	chr11:34969053:+	ONLY_REF_SPLICE	YES	1910	130	0.02	0.24	0.4624	0.1121	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	LMSU_STOMACH	0.02	0.24	0.5745	TRUE	0	1	0	5	0	FALSE	ACH-000255
LMSU_STOMACH	TEAD4--B4GALNT3	32	12	TEAD4	1711	chr12:3069206:+	B4GALNT3	17702	chr12:644332:+	ONLY_REF_SPLICE	YES	40	0	0.52	1	0.4483	0.1681	TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+,B4GALNT3->beta-1,4-N-acetyl-galactosaminyltransferase_3,chr12:569530-672675:+	LMSU_STOMACH	0.52	1	0.6164	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	MPDZ--SLC25A51	31	7	MPDZ	3431	chr9:13247634:-	SLC25A51	58359	chr9:37899947:-	ONLY_REF_SPLICE	YES	9	13	0.81	0.75	0.4343	0.0981	MPDZ->chr9:13105703-13279589:-,multiple_PDZ_domain_crumbs_cell_polarity_complex_component,SLC25A51->chr9:37879400-37904350:-,solute_carrier_family_25_member_51	LMSU_STOMACH	0.75	0.81	0.5324	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	RP11-680G10.1--GSE1	30	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	15	1	0.71	0.4203	0.0981	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LMSU_STOMACH	0.71	1	0.5184	TRUE	465	1949	224	605	0	FALSE	ACH-000255
LMSU_STOMACH	CD99--ATP11C	26	7	CD99	1249	chrX:2609468:+	ATP11C	44007	chrX:138840026:-	ONLY_REF_SPLICE	YES	135	34	0.2	0.49	0.3643	0.0981	CD99->CD99_molecule,chrX:2609220-2659350:+,chrY:2559220-2609350:+,ATP11C->ATPase_phospholipid_transporting_11C,chrX:138808505-139027435:-	LMSU_STOMACH	0.2	0.49	0.4624	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	DYNC2H1--CERS3	26	7	DYNC2H1	91652	chr11:103339433:+	CERS3	112992	chr15:100943070:-	ONLY_REF_SPLICE	YES	384	0	0.08	1	0.3643	0.0981	DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1,CERS3->ceramide_synthase_3,chr15:100940600-101085200:-	LMSU_STOMACH	0.08	1	0.4624	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	ARAP1--CPHL1P	19	10	ARAP1	23094	chr11:72407594:-	CPHL1P	37823	chr3:148994688:-	ONLY_REF_SPLICE	YES	55	0	0.35	1	0.2662	0.1401	ARAP1->ArfGAP_with_RhoGAP_domain,_ankyrin_repeat_and_PH_domain_1,chr11:72396114-72504644:-,CPHL1P->ceruloplasmin_and_hephaestin-like_1_pseudogene,chr3:148947143-149009587:-	LMSU_STOMACH	0.35	1	0.4063	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	PEX2--RP11-757G1.6	20	5	PEX2	2055	chr8:77912226:-	RP11-757G1.6	13685	chr11:68639011:+	ONLY_REF_SPLICE	YES	41	0	0.38	1	0.2802	0.0701	PEX2->chr8:77892494-77913280:-,peroxisomal_biogenesis_factor_2,RP11-757G1.6->chr11:68638132-68642010:+	LMSU_STOMACH	0.38	1	0.3503	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	SMYD3--RP11-439E19.8	1	76	SMYD3	3707	chr1:246580598:-	RP11-439E19.8	35688	chr1:246978584:-	ONLY_REF_SPLICE	YES	128	0	0.38	1	0.014	1.0648	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,RP11-439E19.8->chr1:246935139-246993361:-	LMSU_STOMACH	0.38	1	1.0788	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	AP003900.6--AC011718.2	19	3	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	0	13	1	0.63	0.2662	0.042	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LMSU_STOMACH	0.63	1	0.3082	TRUE	0	1	0	21	1	FALSE	ACH-000255
LMSU_STOMACH	ZNF75D--RP11-40F8.2	18	3	ZNF75D	3320	chrX:134475693:-	RP11-40F8.2	24046	chrX:22639174:-	ONLY_REF_SPLICE	YES	6	0	0.78	1	0.2522	0.042	ZNF75D->chrX:134382867-134478012:-,zinc_finger_protein_75D,RP11-40F8.2->chrX:22277914-23311263:-	LMSU_STOMACH	0.78	1	0.2942	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	RP11-680G10.1--GSE1	14	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.1962	0.1261	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LMSU_STOMACH	0.96	1	0.3223	TRUE	458	1351	185	561	0	FALSE	ACH-000255
LMSU_STOMACH	MT-ND6--MT-TE	15	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2102	0.056	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LMSU_STOMACH	1	1	0.2662	FALSE	499	1288	110	792	0	FALSE	ACH-000255
LMSU_STOMACH	AP003900.6--AC011718.2	13	4	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1821	0.056	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LMSU_STOMACH	1	1	0.2381	TRUE	0	1	0	26	1	FALSE	ACH-000255
LMSU_STOMACH	RP11-344E13.3--UBBP4	5	32	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.0701	0.4483	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	LMSU_STOMACH	0.97	1	0.5184	TRUE	23	13	0	54	0	FALSE	ACH-000255
LMSU_STOMACH	AC083899.3--FAM135A	12	2	AC083899.3	17081	chr2:87391781:+	FAM135A	39967	chr6:71162195:+	ONLY_REF_SPLICE	YES	27	5	0.34	0.74	0.1681	0.028	AC083899.3->chr2:87352513-87423770:+,FAM135A->chr6:71122644-71270877:+,family_with_sequence_similarity_135_member_A	LMSU_STOMACH	0.34	0.74	0.1961	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	ADRBK2--KIAA1671	11	6	ADRBK2	9939	chr22:26074882:+	KIAA1671	46868	chr22:25566787:+	ONLY_REF_SPLICE	YES	13	1	0.57	0.94	0.1541	0.0841	ADRBK2->adrenergic,_beta,_receptor_kinase_2,chr22:25960816-26125261:+,KIAA1671->KIAA1671,chr22:25348697-25593415:+	LMSU_STOMACH	0.57	0.94	0.2382	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	AFF1--RP11-773D16.1	11	4	AFF1	3385	chr4:87869723:+	RP11-773D16.1	37473	chr10:81574472:-	ONLY_REF_SPLICE	YES	3	23	0.83	0.39	0.1541	0.056	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,RP11-773D16.1->chr10:81563813-81586350:-	LMSU_STOMACH	0.39	0.83	0.2101	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	FARS2--LSAMP	11	4	FARS2	1617	chr6:5261893:+	LSAMP	17825	chr3:116163802:-	ONLY_REF_SPLICE	YES	15	0	0.5	1	0.1541	0.056	FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	LMSU_STOMACH	0.5	1	0.2101	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	RP11-634B7.4--TRIM58	11	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	2	105	0.86	0.1	0.1541	0.014	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	LMSU_STOMACH	0.1	0.86	0.1681	TRUE	158	633	76	73	0	FALSE	ACH-000255
LMSU_STOMACH	SMYD3--RP11-439E19.8	11	0	SMYD3	1259	chr1:246670356:-	RP11-439E19.8	36724	chr1:246973335:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1541	0	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,RP11-439E19.8->chr1:246935139-246993361:-	LMSU_STOMACH	1	1	0.1541	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	PPFIBP2--INSC	9	6	PPFIBP2	1824	chr11:7535352:+	INSC	44773	chr11:15197287:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1261	0.0841	PPFIBP2->PPFIA_binding_protein_2,chr11:7534529-7678358:+,INSC->chr11:15133970-15268754:+,inscuteable_homolog_(Drosophila)	LMSU_STOMACH	0.88	1	0.2102	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	CD99--ATP11C	8	9	CD99	1249	chrX:2609468:+	ATP11C	42861	chrX:138844265:-	ONLY_REF_SPLICE	YES	135	20	0.11	0.46	0.1121	0.1261	CD99->CD99_molecule,chrX:2609220-2659350:+,chrY:2559220-2609350:+,ATP11C->ATPase_phospholipid_transporting_11C,chrX:138808505-139027435:-	LMSU_STOMACH	0.11	0.46	0.2382	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	C15orf57--CBX3	8	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	12	24	0.57	0.4	0.1121	0.1121	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LMSU_STOMACH	0.4	0.57	0.2242	TRUE	267	562	48	632	0	FALSE	ACH-000255
LMSU_STOMACH	HSP90AB1--MT-RNR2	9	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3621	0	0	1	0.1261	0.028	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LMSU_STOMACH	0	1	0.1541	FALSE	13	9	0	364	0	FALSE	ACH-000255
LMSU_STOMACH	C15orf57--CBX3	8	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	12	24	0.52	0.35	0.1121	0.0701	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LMSU_STOMACH	0.35	0.52	0.1822	TRUE	267	562	48	632	0	FALSE	ACH-000255
LMSU_STOMACH	ZHX1--MCFD2	8	3	ZHX1	6291	chr8:124268078:-	MCFD2	15696	chr2:47168864:-	INCL_NON_REF_SPLICE	YES	40	0	0.22	1	0.1121	0.042	ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,MCFD2->chr2:47129009-47168994:-,multiple_coagulation_factor_deficiency_2	LMSU_STOMACH	0.22	1	0.1541	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	AFF1--RP11-773D16.1	7	6	AFF1	6061	chr4:87928576:+	RP11-773D16.1	37473	chr10:81574472:-	ONLY_REF_SPLICE	YES	4	23	0.76	0.36	0.0981	0.0841	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,RP11-773D16.1->chr10:81563813-81586350:-	LMSU_STOMACH	0.36	0.76	0.1822	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	MT-ND6--MT-TE	7	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0981	0.056	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LMSU_STOMACH	1	1	0.1541	FALSE	499	1288	110	792	0	FALSE	ACH-000255
LMSU_STOMACH	AP003900.6--AC011718.2	5	11	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0701	0.1541	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LMSU_STOMACH	0.94	1	0.2242	TRUE	0	1	0	20	1	FALSE	ACH-000255
LMSU_STOMACH	KIAA1211--CDCA3	7	2	KIAA1211	4585	chr4:57138658:+	CDCA3	23468	chr12:6960173:-	ONLY_REF_SPLICE	YES	1	10	0.9	0.47	0.0981	0.028	KIAA1211->KIAA1211,chr4:57036361-57194791:+,CDCA3->cell_division_cycle_associated_3,chr12:6953957-6961230:-	LMSU_STOMACH	0.47	0.9	0.1261	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	ZNF75D--RP11-40F8.2	7	1	ZNF75D	1827	chrX:134477186:-	RP11-40F8.2	24046	chrX:22639174:-	ONLY_REF_SPLICE	YES	6	0	0.57	1	0.0981	0.014	ZNF75D->chrX:134382867-134478012:-,zinc_finger_protein_75D,RP11-40F8.2->chrX:22277914-23311263:-	LMSU_STOMACH	0.57	1	0.1121	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	SLC24A2--RP11-614F17.2	6	3	SLC24A2	1992	chr9:19785935:-	RP11-614F17.2	24014	chr4:132694721:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.9	0.0841	0.042	SLC24A2->chr9:19507450-19786926:-,solute_carrier_family_24_member_2,RP11-614F17.2->chr4:132694457-132712637:+	LMSU_STOMACH	0.9	1	0.1261	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	INTS4--ALG8	6	0	INTS4	2281	chr11:77702154:-	ALG8	47547	chr11:77817958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0841	0	INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,ALG8->ALG8,_alpha-1,3-glucosyltransferase,chr11:77811982-77850706:-	LMSU_STOMACH	1	1	0.0841	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	MT-ND6--MT-TE	3	11	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.042	0.1541	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LMSU_STOMACH	1	1	0.1961	FALSE	499	1288	110	792	0	FALSE	ACH-000255
LMSU_STOMACH	ARAP1--CPHL1P	5	2	ARAP1	23094	chr11:72407594:-	CPHL1P	38101	chr3:148994410:-	ONLY_REF_SPLICE	YES	55	4	0.11	0.64	0.0701	0.028	ARAP1->ArfGAP_with_RhoGAP_domain,_ankyrin_repeat_and_PH_domain_1,chr11:72396114-72504644:-,CPHL1P->ceruloplasmin_and_hephaestin-like_1_pseudogene,chr3:148947143-149009587:-	LMSU_STOMACH	0.11	0.64	0.0981	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	HSP90AB1--MT-RNR2	5	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3555	0	0	1	0.0701	0.028	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LMSU_STOMACH	0	1	0.0981	FALSE	13	9	0	364	0	FALSE	ACH-000255
LMSU_STOMACH	MT-ND6--MT-TE	4	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0.0841	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LMSU_STOMACH	1	1	0.1401	FALSE	499	1288	110	792	0	FALSE	ACH-000255
LMSU_STOMACH	ERC1--WNT5B	4	5	ERC1	27459	chr12:1481143:+	WNT5B	51638	chr12:1740464:+	ONLY_REF_SPLICE	YES	20	0	0.31	1	0.056	0.0701	NEIGHBORS[33958],ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,WNT5B->Wnt_family_member_5B,chr12:1639057-1756409:+	LMSU_STOMACH	0.31	1	0.1261	FALSE	0	0	0	1	0	FALSE	ACH-000255
LMSU_STOMACH	INTS8--DPY19L4	5	1	INTS8	17130	chr8:95869206:+	DPY19L4	50636	chr8:95792587:+	ONLY_REF_SPLICE	YES	49	43	0.11	0.12	0.0701	0.014	LOCAL_REARRANGEMENT:+:[19475],INTS8->chr8:95825539-95893974:+,integrator_complex_subunit_8,DPY19L4->chr8:95731931-95806064:+,dpy-19_like_4_(C._elegans)	LMSU_STOMACH	0.11	0.12	0.0841	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	REV1--AC096669.2	5	1	REV1	14475	chr2:100046302:-	AC096669.2	35876	chr2:108003320:-	ONLY_REF_SPLICE	YES	27	0	0.18	1	0.0701	0.014	REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-,AC096669.2->chr2:108002088-108159105:-	LMSU_STOMACH	0.18	1	0.0841	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	AP003900.6--AC011718.2	4	4	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	1	13	0.89	0.38	0.056	0.056	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LMSU_STOMACH	0.38	0.89	0.112	TRUE	0	1	0	24	1	FALSE	ACH-000255
LMSU_STOMACH	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LMSU_STOMACH	1	1	0.0701	FALSE	351	233	23	137	0	FALSE	ACH-000255
LMSU_STOMACH	SLC24A2--RP11-614F17.2	5	0	SLC24A2	1992	chr9:19785935:-	RP11-614F17.2	26485	chr4:132712365:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0701	0	SLC24A2->chr9:19507450-19786926:-,solute_carrier_family_24_member_2,RP11-614F17.2->chr4:132694457-132712637:+	LMSU_STOMACH	1	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	STIP1--EDEM2	5	0	STIP1	1999	chr11:63953742:+	EDEM2	22941	chr20:33732821:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0701	0	STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1,EDEM2->ER_degradation_enhancing_alpha-mannosidase_like_protein_2,chr20:33703167-33865928:-	LMSU_STOMACH	1	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	CTD-2008L17.1--RP11-456O19.2	4	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.056	0.028	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	LMSU_STOMACH	0.86	1	0.084	FALSE	20	187	4	79	0	FALSE	ACH-000255
LMSU_STOMACH	AC017048.4--MTX2	4	1	AC017048.4	3438	chr2:177520248:+	MTX2	8902	chr2:177161588:+	ONLY_REF_SPLICE	YES	2	122	0.71	0.04	0.056	0.014	AC017048.4->chr2:177502438-177520686:+,MTX2->chr2:177134123-177202753:+,metaxin_2	LMSU_STOMACH	0.04	0.71	0.07	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	GBE1--RUNX2	4	1	GBE1	1787	chr3:81810526:-	RUNX2	30444	chr6:45390330:+	ONLY_REF_SPLICE	YES	216	23	0.02	0.18	0.056	0.014	GBE1->chr3:81538850-81811312:-,glucan_(1,4-alpha-),_branching_enzyme_1,RUNX2->Oncogene{Bushman},chr6:45295894-45632086:+,runt_related_transcription_factor_2	LMSU_STOMACH	0.02	0.18	0.07	TRUE	0	0	0	1	0	FALSE	ACH-000255
LMSU_STOMACH	GNA13--AC037445.1	4	1	GNA13	3474	chr17:63049620:-	AC037445.1	12617	chr17:61416438:-	INCL_NON_REF_SPLICE	YES	56	0	0.08	1	0.056	0.014	GNA13->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_13,chr17:63006833-63052957:-,AC037445.1->chr17:61271291-61416414:-	LMSU_STOMACH	0.08	1	0.07	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.056	0.014	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LMSU_STOMACH	0.71	1	0.07	FALSE	515	4851	409	746	0	FALSE	ACH-000255
LMSU_STOMACH	VIM--TAGLN2	4	1	VIM	2147	chr10:17271404:+	TAGLN2	15516	chr1:159890313:-	INCL_NON_REF_SPLICE	YES	3672	20	0	0.2	0.056	0.014	VIM->chr10:17270258-17279592:+,vimentin,TAGLN2->chr1:159887897-159895522:-,transgelin_2	LMSU_STOMACH	0	0.2	0.07	FALSE	0	0	0	2	0	FALSE	ACH-000255
LMSU_STOMACH	ARHGAP42--CNTN5	4	0	ARHGAP42	1180	chr11:100558563:+	CNTN5	68387	chr11:100221433:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.056	0	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,CNTN5->chr11:98891683-100229616:+,contactin_5	LMSU_STOMACH	1	1	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	SLC24A2--RP11-614F17.2	3	3	SLC24A2	1992	chr9:19785935:-	RP11-614F17.2	25041	chr4:132695748:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.042	0.042	SLC24A2->chr9:19507450-19786926:-,solute_carrier_family_24_member_2,RP11-614F17.2->chr4:132694457-132712637:+	LMSU_STOMACH	1	1	0.084	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	COL1A1--NPM1	3	2	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	2305	1	0	0.83	0.042	0.028	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	LMSU_STOMACH	0	0.83	0.07	FALSE	0	0	0	31	0	FALSE	ACH-000255
LMSU_STOMACH	TMEM123--BIRC2	3	2	TMEM123	5695	chr11:102319543:-	BIRC2	18133	chr11:102221575:+	ONLY_REF_SPLICE	YES	4054	2986	0	0	0.042	0.028	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},{Klijn_CCL:Brain=1},LOCAL_INVERSION:-:+:[17662],TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	LMSU_STOMACH	0	0	0.07	FALSE	0	0	0	2	0	FALSE	ACH-000255
LMSU_STOMACH	ABTB2--CSTF3	3	1	ABTB2	2308	chr11:34378248:-	CSTF3	31035	chr11:33129964:-	ONLY_REF_SPLICE	YES	26	207	0.13	0.02	0.042	0.014	ABTB2->Oncogene{Bushman},ankyrin_repeat_and_BTB_domain_containing_2,chr11:34172535-34379555:-,CSTF3->chr11:33098734-33183917:-,cleavage_stimulation_factor_subunit_3	LMSU_STOMACH	0.02	0.13	0.056	TRUE	0	0	0	1	0	FALSE	ACH-000255
LMSU_STOMACH	AP003900.6--AC011718.2	1	9	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	NO	1	0	0.91	1	0.014	0.1261	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LMSU_STOMACH	0.91	1	0.1401	TRUE	0	0	0	21	0	FALSE	ACH-000255
LMSU_STOMACH	FOCAD--KCNMA1	3	1	FOCAD	45683	chr9:20949674:+	KCNMA1	68538	chr10:78944674:-	ONLY_REF_SPLICE	YES	11	67	0.27	0.06	0.042	0.014	FOCAD->chr9:20658308-20995954:+,focadhesin,KCNMA1->chr10:78629359-79398353:-,potassium_calcium-activated_channel_subfamily_M_alpha_1	LMSU_STOMACH	0.06	0.27	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	GNA13--AC037445.1	3	1	GNA13	3474	chr17:63049620:-	AC037445.1	14881	chr17:61397852:-	ONLY_REF_SPLICE	YES	56	1	0.07	0.8	0.042	0.014	GNA13->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_13,chr17:63006833-63052957:-,AC037445.1->chr17:61271291-61416414:-	LMSU_STOMACH	0.07	0.8	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	AP001432.14--CDH9	3	0	AP001432.14	1179	chr21:38593898:+	CDH9	8871	chr5:26988489:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.042	0	AP001432.14->chr21:38593720-38610045:+,CDH9->cadherin_9,chr5:26880709-27121257:-	LMSU_STOMACH	1	1	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	MT-ND3--MT-ATP8	3	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.042	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LMSU_STOMACH	1	1	0.042	FALSE	351	233	23	137	0	FALSE	ACH-000255
LMSU_STOMACH	RP11-476K15.1--CTD-2015H3.2	2	3	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0.042	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	LMSU_STOMACH	1	1	0.07	FALSE	0	46	0	73	0	FALSE	ACH-000255
LMSU_STOMACH	GBE1--RUNX2	2	1	GBE1	1787	chr3:81810526:-	RUNX2	28720	chr6:45339626:+	ONLY_REF_SPLICE	YES	216	0	0.01	1	0.028	0.014	GBE1->chr3:81538850-81811312:-,glucan_(1,4-alpha-),_branching_enzyme_1,RUNX2->Oncogene{Bushman},chr6:45295894-45632086:+,runt_related_transcription_factor_2	LMSU_STOMACH	0.01	1	0.042	FALSE	0	0	0	1	0	FALSE	ACH-000255
LMSU_STOMACH	INTS4--ALG8	2	1	INTS4	2281	chr11:77702154:-	ALG8	47513	chr11:77817992:-	ONLY_REF_SPLICE	YES	33	46	0.08	0.06	0.028	0.014	INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,ALG8->ALG8,_alpha-1,3-glucosyltransferase,chr11:77811982-77850706:-	LMSU_STOMACH	0.06	0.08	0.042	TRUE	0	0	0	1	0	FALSE	ACH-000255
LMSU_STOMACH	KIAA1211--CDCA3	2	1	KIAA1211	4585	chr4:57138658:+	CDCA3	23881	chr12:6959760:-	ONLY_REF_SPLICE	YES	1	149	0.75	0.02	0.028	0.014	KIAA1211->KIAA1211,chr4:57036361-57194791:+,CDCA3->cell_division_cycle_associated_3,chr12:6953957-6961230:-	LMSU_STOMACH	0.02	0.75	0.042	TRUE	0	0	0	1	0	FALSE	ACH-000255
LMSU_STOMACH	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.028	0.014	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LMSU_STOMACH	0.75	1	0.042	FALSE	192	492	57	212	0	FALSE	ACH-000255
LMSU_STOMACH	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.75	0.6	0.028	0.014	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LMSU_STOMACH	0.6	0.75	0.042	FALSE	467	2173	244	435	0	FALSE	ACH-000255
LMSU_STOMACH	TMEM123--YAP1	2	1	TMEM123	5695	chr11:102319543:-	YAP1	23719	chr11:102094353:+	ONLY_REF_SPLICE	YES	4054	2147	0	0	0.028	0.014	{Klijn_CCL:Head-Neck=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	LMSU_STOMACH	0	0	0.042	FALSE	0	0	0	1	0	FALSE	ACH-000255
LMSU_STOMACH	TMEM123--YAP1	2	1	TMEM123	2732	chr11:102323255:-	YAP1	21477	chr11:102076624:+	ONLY_REF_SPLICE	YES	4391	1772	0	0	0.028	0.014	{Klijn_CCL:Head-Neck=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	LMSU_STOMACH	0	0	0.042	FALSE	0	0	0	2	0	FALSE	ACH-000255
LMSU_STOMACH	AKT3--COL5A1	2	0	AKT3	25845	chr1:243708812:-	COL5A1	77672	chr9:137696821:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1	LMSU_STOMACH	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	CD99--ATP11C	1	4	CD99	1249	chrX:2609468:+	ATP11C	45067	chrX:138832311:-	ONLY_REF_SPLICE	NO	135	24	0.04	0.17	0.014	0.056	CD99->CD99_molecule,chrX:2609220-2659350:+,chrY:2559220-2609350:+,ATP11C->ATPase_phospholipid_transporting_11C,chrX:138808505-139027435:-	LMSU_STOMACH	0.04	0.17	0.07	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	CTD-2516F10.2--PSMA1	1	4	CTD-2516F10.2	7880	chr11:7471604:-	PSMA1	20929	chr11:14632697:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.014	0.056	CTD-2516F10.2->chr11:7448497-7533746:-,PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1	LMSU_STOMACH	0.83	1	0.07	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	GALNS--TCF25	2	0	GALNS	1213	chr16:88923166:-	TCF25	41327	chr16:89972602:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	GALNS->Oncogene{Bushman},chr16:88880142-88923378:-,galactosamine_(N-acetyl)-6-sulfatase,TCF25->chr16:89940000-89977792:+,transcription_factor_25	LMSU_STOMACH	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	KIAA0101--GAS5	2	0	KIAA0101	5437	chr15:64668942:-	GAS5	16314	chr1:173833842:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	KIAA0101->KIAA0101,chr15:64657193-64679886:-,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	LMSU_STOMACH	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	LARP4--FAM20B	2	0	LARP4	2426	chr12:50794811:+	FAM20B	33094	chr1:179012850:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+,FAM20B->chr1:178994939-179045697:+,family_with_sequence_similarity_20_member_B	LMSU_STOMACH	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	PPFIBP2--INSC	2	0	PPFIBP2	1824	chr11:7535352:+	INSC	49443	chr11:15212247:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	PPFIBP2->PPFIA_binding_protein_2,chr11:7534529-7678358:+,INSC->chr11:15133970-15268754:+,inscuteable_homolog_(Drosophila)	LMSU_STOMACH	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LMSU_STOMACH	1	1	0.028	FALSE	16	356	14	466	0	FALSE	ACH-000255
LMSU_STOMACH	ZBTB25--FAM49B	2	0	ZBTB25	5948	chr14:64957079:-	FAM49B	28259	chr8:130916831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	ZBTB25->chr14:64915824-64971931:-,zinc_finger_and_BTB_domain_containing_25,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	LMSU_STOMACH	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000255
LMSU_STOMACH	AC002066.1--AC073130.1	1	2	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.014	0.028	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	LMSU_STOMACH	1	1	0.042	FALSE	0	1	1	30	0	FALSE	ACH-000255
LMSU_STOMACH	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	24	1	0.11	0.014	0.028	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LMSU_STOMACH	0.11	1	0.042	TRUE	64	13	3	59	0	FALSE	ACH-000255
LMSU_STOMACH	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	2183	114	0	0.03	0.014	0.028	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	LMSU_STOMACH	0	0.03	0.042	FALSE	6	50	7	115	0	FALSE	ACH-000255
LMSU_STOMACH	CTD-2008L17.1--RP11-456O19.2	1	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.014	0.014	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	LMSU_STOMACH	0.67	1	0.028	FALSE	33	240	4	98	0	FALSE	ACH-000255
LMSU_STOMACH	DST--TRAM2	1	1	DST	4600	chr6:56716195:-	TRAM2	131531	chr6:52381535:-	ONLY_REF_SPLICE	YES	22	30	0.08	0.06	0.014	0.014	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,TRAM2->chr6:52362200-52441713:-,translocation_associated_membrane_protein_2	LMSU_STOMACH	0.06	0.08	0.028	TRUE	0	0	0	1	0	FALSE	ACH-000255
LMSU_STOMACH	HOOK3--PARN	1	1	HOOK3	8815	chr8:42814457:+	PARN	57919	chr16:14678279:-	ONLY_REF_SPLICE	YES	41	35	0.05	0.05	0.014	0.014	HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3,PARN->chr16:14529558-14726585:-,poly(A)-specific_ribonuclease	LMSU_STOMACH	0.05	0.05	0.028	TRUE	0	0	0	1	0	FALSE	ACH-000255
LMSU_STOMACH	MICAL2--NUP98	1	1	MICAL2	11476	chr11:12183966:+	NUP98	59881	chr11:3784269:-	ONLY_REF_SPLICE	YES	229	136	0.01	0.01	0.014	0.014	MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2,NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa	LMSU_STOMACH	0.01	0.01	0.028	FALSE	0	0	0	1	0	FALSE	ACH-000255
LMSU_STOMACH	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.014	0.014	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LMSU_STOMACH	0.33	1	0.028	FALSE	164	806	69	479	0	FALSE	ACH-000255
LMSU_STOMACH	TMEM123--YAP1	1	1	TMEM123	5695	chr11:102319543:-	YAP1	21477	chr11:102076624:+	ONLY_REF_SPLICE	NO	4054	1772	0	0	0.014	0.014	{Klijn_CCL:Head-Neck=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	LMSU_STOMACH	0	0	0.028	FALSE	0	3	0	2	0	FALSE	ACH-000255
LMSU_STOMACH	TMEM123--YAP1	1	1	TMEM123	5695	chr11:102319543:-	YAP1	17441	chr11:101984875:+	ONLY_REF_SPLICE	YES	4054	1202	0	0	0.014	0.014	{Klijn_CCL:Head-Neck=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	LMSU_STOMACH	0	0	0.028	FALSE	0	0	0	3	0	FALSE	ACH-000255
LMSU_STOMACH	TTC6--MIPOL1	1	1	TTC6	1162	chr14:38065213:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.014	0.014	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	LMSU_STOMACH	1	1	0.028	TRUE	0	9	0	5	8	TRUE	ACH-000255
LMSU_STOMACH	YAP1--BIRC2	1	1	YAP1	4192	chr11:101985125:+	BIRC2	24569	chr11:102233627:+	ONLY_REF_SPLICE	YES	1499	2627	0	0	0.014	0.014	YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	LMSU_STOMACH	0	0	0.028	FALSE	0	2	0	1	1	FALSE	ACH-000255
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	91	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8582	0.2924	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	1.1506	TRUE	508	994	45	981	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	63	23	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	21	55	0.8	0.61	0.5942	0.2169	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.61	0.8	0.8111	TRUE	181	1564	124	196	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	58	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.547	0.066	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.613	FALSE	462	80	0	856	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	42	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	248	4	0.16	0.92	0.3961	0.0472	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.16	0.92	0.4433	TRUE	519	3926	326	965	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	147	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	10	0	0.94	1	0.0283	1.3864	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.94	1	1.4147	FALSE	344	826	44	306	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	142	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	4	0	0.97	1	0.0283	1.3392	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.97	1	1.3675	FALSE	344	826	44	306	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	113	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0283	1.0657	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.98	1	1.094	FALSE	344	826	44	306	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	104	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	6	0	0.95	1	0.0472	0.9808	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.95	1	1.028	FALSE	344	826	44	306	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MTAP--CDKN2B-AS1	27	16	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	44105	chr9:22120199:+	ONLY_REF_SPLICE	YES	43	3	0.5	0.93	0.2546	0.1509	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.5	0.93	0.4055	FALSE	0	5	0	4	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	109	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	5520	0	0.02	1	0.0283	1.028	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.02	1	1.0563	FALSE	344	827	44	306	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	105	MT-ND4	1466	chrM:11225:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	295	0	0.27	1	0.0283	0.9903	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.27	1	1.0186	FALSE	344	827	44	306	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	11	30	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	336	0	0.11	1	0.1037	0.2829	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.3866	FALSE	344	827	44	306	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	17	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1603	0.0283	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.1886	FALSE	499	1288	110	792	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	HSP90AB1--MT-RNR2	16	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3682	0	0	1	0.1509	0.0189	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0	1	0.1698	FALSE	13	9	0	364	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MTAP--CDKN2B-AS1	14	3	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	44409	chr9:22120503:+	ONLY_REF_SPLICE	YES	43	3	0.28	0.85	0.132	0.0283	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.28	0.85	0.1603	FALSE	0	5	0	4	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	46	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	11	0	0.82	1	0.0283	0.4338	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.82	1	0.4621	FALSE	344	826	44	306	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	35	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0472	0.3301	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.3773	FALSE	344	821	44	306	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	11	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1037	0.0754	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.1791	FALSE	462	80	0	856	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	12	1	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	68	37	0.16	0.26	0.1132	0.0094	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.16	0.26	0.1226	FALSE	59	21	0	114	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	11	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1037	0.0283	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.132	FALSE	416	2512	207	587	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	11	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1037	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.1037	FALSE	230	193	14	283	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	23	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	10	0	0.74	1	0.0472	0.2169	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.74	1	0.2641	FALSE	344	826	44	306	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	10	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0943	0.0283	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.1226	FALSE	499	1288	110	792	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	HSP90AB1--MT-RNR2	10	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3708	0	0	1	0.0943	0.0189	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0	1	0.1132	FALSE	13	9	0	364	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	30	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	10	0	0.77	1	0.0283	0.2829	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.77	1	0.3112	FALSE	344	826	44	306	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	29	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10	0	0.76	1	0.0283	0.2735	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.76	1	0.3018	FALSE	344	826	44	306	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-TG	10	0	MT-ND3	1026	chrM:10084:+	MT-TG	4396	chrM:10040:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0943	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0943	FALSE	97	9	0	14	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	9	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0849	0.0377	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.1226	FALSE	499	1288	110	792	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	15	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	30	0	0.41	1	0.0566	0.1415	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.41	1	0.1981	FALSE	344	827	44	306	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	9	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0849	0.0283	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.1132	FALSE	292	1546	117	613	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	9	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	22	1	0.31	0.0849	0.0094	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.31	1	0.0943	TRUE	465	1949	224	605	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	7	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	28	0	0.35	1	0.066	0.0754	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.35	1	0.1414	FALSE	164	806	69	479	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	7	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.066	0.0754	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.1414	FALSE	407	2205	196	549	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.066	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.066	TRUE	1	39	0	134	39	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	16	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0283	0.1509	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.1792	FALSE	344	821	44	306	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	5	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	83	48	0.11	0.17	0.0472	0.0472	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.11	0.17	0.0944	TRUE	267	562	48	632	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	5	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.38	1	0.0472	0.0472	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.38	1	0.0944	FALSE	125	705	46	456	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	8	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.0754	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.1131	FALSE	499	1288	110	792	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0566	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0566	FALSE	499	1288	110	792	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.066	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.1037	FALSE	499	1288	110	792	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	6	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.0566	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0943	FALSE	462	80	0	856	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0.0943	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.1226	FALSE	462	80	0	856	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	3	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	86	47	0.12	0.2	0.0283	0.0849	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.12	0.2	0.1132	TRUE	267	562	48	632	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	RP11-476K15.1--CTD-2015H3.2	5	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10183	chr18:1779897:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0.0094	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0566	FALSE	0	46	0	73	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0472	FALSE	351	233	23	137	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0472	FALSE	230	198	14	283	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	RP11-110I1.6--MT-ND4	5	0	RP11-110I1.6	2253	chr11:118916151:+	MT-ND4	5775	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	RP11-110I1.6->chr11:118914899-118916205:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0472	FALSE	0	0	0	4	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.78	0.0377	0.0283	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.78	1	0.066	FALSE	515	4851	409	746	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	4	1	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	63	18	0.07	0.22	0.0377	0.0094	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.07	0.22	0.0471	FALSE	59	21	0	114	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND6	3	5	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	2	1	0.8	0.0283	0.0472	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.0755	FALSE	26	124	4	93	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0471	FALSE	462	80	0	856	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	4	0	MT-ATP6	1138	chrM:8664:+	MT-CO2	4988	chrM:7892:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0377	FALSE	59	21	0	114	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	0	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0377	FALSE	231	217	16	283	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	0	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0377	FALSE	216	209	16	281	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	2	6	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	32	55	0.2	0.13	0.0189	0.0566	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.13	0.2	0.0755	TRUE	105	90	7	93	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	13304	0	0	1	0.0283	0.0189	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0	1	0.0472	FALSE	231	217	16	283	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0.0189	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0472	FALSE	344	821	44	306	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	1	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13472	1	0	0.8	0.0283	0.0094	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0	0.8	0.0377	FALSE	231	217	16	283	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.29	0.0283	0.0094	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.29	1	0.0377	TRUE	458	1351	185	561	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	GNPDA2--KLHL5	3	0	GNPDA2	1122	chr4:44728491:-	KLHL5	20878	chr4:39077585:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GNPDA2->chr4:44684217-44728612:-,glucosamine-6-phosphate_deaminase_2,KLHL5->chr4:39046659-39128477:+,kelch_like_family_member_5	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	ITM2C--MT-CO1	3	0	ITM2C	5714	chr2:231741622:+	MT-CO1	11698	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	ITM2C->chr2:231729354-231743963:+,integral_membrane_protein_2C,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0283	FALSE	0	0	0	6	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	3	0	MT-ATP6	1072	chrM:8598:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0283	FALSE	59	21	0	114	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	0	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0283	FALSE	231	217	16	283	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	0	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0283	FALSE	231	217	16	283	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	2	2	KANSL1	9741	chr17:44171926:-	ARL17B	40066	chr17:44388641:-	ONLY_REF_SPLICE	YES	21	6	0.16	0.4	0.0189	0.0189	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.16	0.4	0.0378	TRUE	13	9	0	5	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	DENND1A--PSMB7	2	0	DENND1A	24177	chr9:126202639:-	PSMB7	52173	chr9:127119194:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Heart_-_Atrial_Appendage=1},DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	2	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	FHOD3--RPRD1A	2	0	FHOD3	3459	chr18:33952707:+	RPRD1A	52266	chr18:33573263:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	GAB2--PAK1	2	0	GAB2	6290	chr11:77991647:-	PAK1	30200	chr11:77103586:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,PAK1->Oncogene{Bushman},chr11:77032752-77185680:-,p21_(RAC1)_activated_kinase_1	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	ING5--UBR2	2	0	ING5	2140	chr2:242644139:+	UBR2	56945	chr6:42641529:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	ING5->chr2:242641450-242668893:+,inhibitor_of_growth_family_member_5,UBR2->chr6:42531800-42661242:+,ubiquitin_protein_ligase_E3_component_n-recognin_2	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	2	0	KANSL1	7536	chr17:44248221:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	16	5	0	9	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MYO1C--PITPNA	2	0	MYO1C	2213	chr17:1394894:-	PITPNA	30211	chr17:1461853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[24906],MYO1C->chr17:1367392-1396106:-,myosin_IC,PITPNA->chr17:1421012-1466110:-,phosphatidylinositol_transfer_protein_alpha	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	1	3	0	2	2	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	FALSE	25	145	6	90	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	PIP5K1C--NACC1	2	0	PIP5K1C	1183	chr19:3700295:-	NACC1	29093	chr19:13246014:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma,NACC1->chr19:13228917-13251955:+,nucleus_accumbens_associated_1	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	PKP3--SRSF2	2	0	PKP3	5423	chr11:397662:+	SRSF2	16895	chr17:74730644:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PKP3->chr11:392614-404908:+,plakophilin_3,SRSF2->Oncogene{Bushman},chr17:74730197-74733456:-,serine/arginine-rich_splicing_factor_2	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	PLS3--COL4A5	2	0	PLS3	1087	chrX:114795587:+	COL4A5	59329	chrX:107898561:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PLS3->chrX:114795501-114885181:+,plastin_3,COL4A5->chrX:107683074-107940775:+,collagen_type_IV_alpha_5	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	RCC1--AARSD1	2	0	RCC1	2175	chr1:28834672:+	AARSD1	27675	chr17:41103911:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,AARSD1->alanyl-tRNA_synthetase_domain_containing_1,chr17:41102543-41116515:-	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	SIPA1L1--HIF1A	2	0	SIPA1L1	8905	chr14:71933964:+	HIF1A	54200	chr14:62187100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SIPA1L1->chr14:71787166-72207946:+,signal_induced_proliferation_associated_1_like_1,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	TSPAN5--NFKB1	2	0	TSPAN5	2090	chr4:99578691:-	NFKB1	24177	chr4:103446669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,NFKB1->Oncogene{Bushman},chr4:103422486-103538459:+,nuclear_factor_kappa_B_subunit_1	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.8	0.67	0.0094	0.0283	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.67	0.8	0.0377	FALSE	467	2173	244	435	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	CBX5--PFKP	1	1	CBX5	1095	chr12:54673792:-	PFKP	26613	chr10:3124580:+	ONLY_REF_SPLICE	YES	27	497	0.07	0	0.0094	0.0094	CBX5->chr12:54624724-54673886:-,chromobox_5,PFKP->chr10:3108525-3179904:+,phosphofructokinase,_platelet	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0	0.07	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	CLN6--ITGB1	1	1	CLN6	3878	chr15:68510874:-	ITGB1	26789	chr10:33224486:-	ONLY_REF_SPLICE	YES	93	217	0.02	0.01	0.0094	0.0094	CLN6->ceroid-lipofuscinosis,_neuronal_6,_late_infantile,_variant,chr15:68499330-68549549:-,ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	CYP7B1--RAB2A	1	1	CYP7B1	1296	chr8:65711023:-	RAB2A	18207	chr8:61488793:+	ONLY_REF_SPLICE	NO	5	322	0.29	0.01	0.0094	0.0094	CYP7B1->Oncogene{Bushman},chr8:65500320-65711318:-,cytochrome_P450_family_7_subfamily_B_member_1,RAB2A->RAB2A,_member_RAS_oncogene_family,chr8:61429416-61536186:+	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.01	0.29	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	FOXO1--LINC00598	1	1	FOXO1	2015	chr13:41239720:-	LINC00598	16798	chr13:41034543:-	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0094	0.0094	NEIGHBORS[74661],FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,LINC00598->chr13:41025131-41055143:-,long_intergenic_non-protein_coding_RNA_598	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.67	1	0.0188	FALSE	8	15	1	11	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	MEIS2--C15orf41	1	1	MEIS2	12226	chr15:37329015:-	C15orf41	52960	chr15:37100525:+	ONLY_REF_SPLICE	YES	33	27	0.06	0.07	0.0094	0.0094	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:-:+:[78957],MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,C15orf41->chr15:36871812-37102449:+,chromosome_15_open_reading_frame_41	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.06	0.07	0.0188	TRUE	0	1	0	4	1	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	RPL15--RPL30	1	1	RPL15	1695	chr3:23958730:+	RPL30	12219	chr8:99057627:-	ONLY_REF_SPLICE	YES	10	60	0.17	0.03	0.0094	0.0094	HGNC_GENEFAM,RPL15->chr3:23958036-23965183:+,ribosomal_protein_L15,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.03	0.17	0.0188	TRUE	0	0	0	1	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	SAMD12--EXT1	1	1	SAMD12	2373	chr8:119592954:-	EXT1	23526	chr8:118849440:-	ONLY_REF_SPLICE	YES	25	341	0.07	0.01	0.0094	0.0094	NEIGHBORS[77606],SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.01	0.07	0.0188	FALSE	0	4	0	6	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	SAMD12--EXT1	1	1	SAMD12	4644	chr8:119391799:-	EXT1	23526	chr8:118849440:-	ONLY_REF_SPLICE	YES	8	341	0.2	0.01	0.0094	0.0094	NEIGHBORS[77606],SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.01	0.2	0.0188	FALSE	0	6	0	3	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	SLC10A7--ARHGAP10	1	1	SLC10A7	6900	chr4:147425001:-	ARHGAP10	49016	chr4:148944414:+	ONLY_REF_SPLICE	NO	17	34	0.11	0.06	0.0094	0.0094	SLC10A7->chr4:147175127-147443123:-,solute_carrier_family_10_member_7,ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.06	0.11	0.0188	TRUE	0	0	0	1	0	FALSE	ACH-000735
PECAPJ49_UPPER_AERODIGESTIVE_TRACT	SLC33A1--CCDC57	1	1	SLC33A1	8740	chr3:155545971:-	CCDC57	25493	chr17:80151706:-	ONLY_REF_SPLICE	YES	61	13	0.03	0.13	0.0094	0.0094	SLC33A1->chr3:155538813-155572218:-,solute_carrier_family_33_member_1,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	PECAPJ49_UPPER_AERODIGESTIVE_TRACT	0.03	0.13	0.0188	TRUE	0	0	0	1	0	FALSE	ACH-000735
LU99_LUNG	SASS6--LRRC7	142	36	SASS6	1206	chr1:100598306:-	LRRC7	52632	chr1:70573435:+	ONLY_REF_SPLICE	YES	21	0	0.89	1	1.7137	0.4345	SASS6->SAS-6_centriolar_assembly_protein,chr1:100549119-100598511:-,LRRC7->chr1:70034081-70617628:+,leucine_rich_repeat_containing_7	LU99_LUNG	0.89	1	2.1482	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	MED13L--FAM101A	129	25	MED13L	6460	chr12:116534474:-	FAM101A	44451	chr12:124634141:+	ONLY_REF_SPLICE	YES	101	0	0.6	1	1.5568	0.3017	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,FAM101A->chr12:124457788-124800570:+,family_with_sequence_similarity_101_member_A	LU99_LUNG	0.6	1	1.8585	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	TIMM23B--LINC00843	128	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.5448	0.2776	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LU99_LUNG	0.99	1	1.8224	TRUE	508	994	45	981	0	FALSE	ACH-000444
LU99_LUNG	TIMM23--RP11-464F9.1	78	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	319	3	0.2	0.96	0.9413	0.0241	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LU99_LUNG	0.2	0.96	0.9654	TRUE	519	3926	326	965	0	FALSE	ACH-000444
LU99_LUNG	ZNF654--HMGB2	66	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7965	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LU99_LUNG	1	1	0.7965	TRUE	0	0	0	518	0	FALSE	ACH-000444
LU99_LUNG	MED13L--RP11-214K3.24	47	22	MED13L	6460	chr12:116534474:-	RP11-214K3.24	45174	chr12:124572811:+	INCL_NON_REF_SPLICE	YES	101	6	0.41	0.92	0.5672	0.2655	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,RP11-214K3.24->chr12:124570308-124573142:+	LU99_LUNG	0.41	0.92	0.8327	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	SASS6--LRRC7	26	31	SASS6	1206	chr1:100598306:-	LRRC7	52649	chr1:70573452:+	INCL_NON_REF_SPLICE	YES	21	0	0.73	1	0.3138	0.3741	SASS6->SAS-6_centriolar_assembly_protein,chr1:100549119-100598511:-,LRRC7->chr1:70034081-70617628:+,leucine_rich_repeat_containing_7	LU99_LUNG	0.73	1	0.6879	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	C15orf57--CBX3	25	15	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	69	38	0.37	0.51	0.3017	0.181	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LU99_LUNG	0.37	0.51	0.4827	TRUE	267	562	48	632	0	FALSE	ACH-000444
LU99_LUNG	RP11-680G10.1--GSE1	23	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	13	1	0.65	0.2776	0.0121	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LU99_LUNG	0.65	1	0.2897	TRUE	465	1949	224	605	0	FALSE	ACH-000444
LU99_LUNG	RP11-123O10.4--GRIP1	21	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2534	0.0483	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LU99_LUNG	1	1	0.3017	FALSE	416	2512	207	587	0	FALSE	ACH-000444
LU99_LUNG	C15orf57--CBX3	15	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	66	39	0.25	0.36	0.181	0.0845	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LU99_LUNG	0.25	0.36	0.2655	TRUE	267	562	48	632	0	FALSE	ACH-000444
LU99_LUNG	HSP90AB1--MT-RNR2	15	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.181	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LU99_LUNG	1	1	0.181	FALSE	13	9	0	364	0	FALSE	ACH-000444
LU99_LUNG	MT-ND6--MT-TE	15	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.181	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LU99_LUNG	1	1	0.181	FALSE	499	1288	110	792	0	FALSE	ACH-000444
LU99_LUNG	HSPBP1--GRK5	14	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.169	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	LU99_LUNG	1	1	0.169	TRUE	1	39	0	134	39	FALSE	ACH-000444
LU99_LUNG	AP000525.9--LA16c-60G3.6	11	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1328	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	LU99_LUNG	1	1	0.1328	TRUE	0	42	0	133	42	FALSE	ACH-000444
LU99_LUNG	RP11-680G10.1--GSE1	10	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.87	0.1207	0.0362	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LU99_LUNG	0.87	1	0.1569	TRUE	458	1351	185	561	0	FALSE	ACH-000444
LU99_LUNG	BAIAP2--CHMP6	8	2	BAIAP2	6850	chr17:79031767:+	CHMP6	35772	chr17:78971061:+	ONLY_REF_SPLICE	YES	120	88	0.08	0.1	0.0965	0.0241	LOCAL_REARRANGEMENT:+:[25631],BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+,CHMP6->charged_multivesicular_body_protein_6,chr17:78965398-78983317:+	LU99_LUNG	0.08	0.1	0.1206	TRUE	0	0	0	1	0	FALSE	ACH-000444
LU99_LUNG	ANP32B--SEPT7	8	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0965	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	LU99_LUNG	1	1	0.0965	TRUE	1	1	0	18	1	TRUE	ACH-000444
LU99_LUNG	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0965	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LU99_LUNG	1	1	0.0965	FALSE	13	9	0	364	0	FALSE	ACH-000444
LU99_LUNG	MT-ND6--MT-TE	8	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0965	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LU99_LUNG	1	1	0.0965	FALSE	499	1288	110	792	0	FALSE	ACH-000444
LU99_LUNG	MT-ND6--MT-TE	7	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	0.0362	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LU99_LUNG	1	1	0.1207	FALSE	499	1288	110	792	0	FALSE	ACH-000444
LU99_LUNG	MT-ND6--MT-TE	5	3	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0603	0.0362	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LU99_LUNG	1	1	0.0965	FALSE	499	1288	110	792	0	FALSE	ACH-000444
LU99_LUNG	EDA--NHSL2	5	1	EDA	1638	chrX:68836548:+	NHSL2	31346	chrX:71358291:+	ONLY_REF_SPLICE	YES	1	6	0.86	0.5	0.0603	0.0121	EDA->chrX:68835911-69259319:+,ectodysplasin_A,NHSL2->NHS_like_2,chrX:71130938-71363424:+	LU99_LUNG	0.5	0.86	0.0724	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	YWHAE--CRK	5	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1917	73	0	0.08	0.0603	0.0121	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	LU99_LUNG	0	0.08	0.0724	FALSE	6	50	7	115	0	FALSE	ACH-000444
LU99_LUNG	FAM219A--ALDH1A1	5	0	FAM219A	1334	chr9:34458235:-	ALDH1A1	14572	chr9:75567930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0603	0	FAM219A->chr9:34398182-34458568:-,family_with_sequence_similarity_219_member_A,ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-	LU99_LUNG	1	1	0.0603	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	C15orf57--CBX3	3	7	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	66	38	0.13	0.21	0.0362	0.0845	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LU99_LUNG	0.13	0.21	0.1207	TRUE	267	562	48	632	0	FALSE	ACH-000444
LU99_LUNG	C17orf76-AS1--ANXA2	4	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0483	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	LU99_LUNG	1	1	0.0483	TRUE	0	0	0	10	0	TRUE	ACH-000444
LU99_LUNG	RP11-353N4.6--RP11-403I13.8	3	3	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	15	0	0.29	1	0.0362	0.0362	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	LU99_LUNG	0.29	1	0.0724	TRUE	6	2	0	8	0	FALSE	ACH-000444
LU99_LUNG	RP11-353N4.6--RP11-403I13.8	3	1	RP11-353N4.6	2221	chr1:149576702:+	RP11-403I13.8	17239	chr1:149291199:+	INCL_NON_REF_SPLICE	YES	20	0	0.17	1	0.0362	0.0121	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	LU99_LUNG	0.17	1	0.0483	TRUE	6	2	0	8	0	FALSE	ACH-000444
LU99_LUNG	FAM219A--ALDH1A1	3	0	FAM219A	1367	chr9:34458202:-	ALDH1A1	14572	chr9:75567930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	FAM219A->chr9:34398182-34458568:-,family_with_sequence_similarity_219_member_A,ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-	LU99_LUNG	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	HSPBP1--GRK5	3	0	HSPBP1	1855	chr19:55790895:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	LU99_LUNG	1	1	0.0362	TRUE	1	39	0	134	39	FALSE	ACH-000444
LU99_LUNG	PVT1--MYC	2	2	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	NO	185	433	0.02	0.01	0.0241	0.0241	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	LU99_LUNG	0.01	0.02	0.0482	FALSE	3	14	0	24	0	FALSE	ACH-000444
LU99_LUNG	CEP170--SDCCAG8	2	1	CEP170	4363	chr1:243388478:-	SDCCAG8	44257	chr1:243468015:+	ONLY_REF_SPLICE	YES	141	183	0.02	0.02	0.0241	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Artery_-_Coronary=1,Nerve_-_Tibial=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:-:+:[670],CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	LU99_LUNG	0.02	0.02	0.0362	TRUE	0	0	0	1	0	FALSE	ACH-000444
LU99_LUNG	PACS1--RP11-707M1.1	2	1	PACS1	1480	chr11:65838313:+	RP11-707M1.1	38747	chr11:49830090:+	ONLY_REF_SPLICE	YES	16	0	0.16	1	0.0241	0.0121	PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1,RP11-707M1.1->chr11:49580098-49831971:+	LU99_LUNG	0.16	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0.0121	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LU99_LUNG	1	1	0.0362	FALSE	93	270	15	244	0	FALSE	ACH-000444
LU99_LUNG	RP11-353N4.6--RP11-403I13.8	2	1	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	20	0	0.13	1	0.0241	0.0121	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	LU99_LUNG	0.13	1	0.0362	TRUE	6	2	0	8	0	FALSE	ACH-000444
LU99_LUNG	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0.0121	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LU99_LUNG	1	1	0.0362	TRUE	62	24	1	171	0	FALSE	ACH-000444
LU99_LUNG	CALM2--EEF1D	2	0	CALM2	1161	chr2:47403580:-	EEF1D	26064	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	LU99_LUNG	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	LU99_LUNG	1	1	0.0241	TRUE	0	6	0	16	3	TRUE	ACH-000444
LU99_LUNG	FAM219A--ALDH1A1	2	0	FAM219A	1367	chr9:34458202:-	ALDH1A1	15652	chr9:75555168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	FAM219A->chr9:34398182-34458568:-,family_with_sequence_similarity_219_member_A,ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-	LU99_LUNG	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	FBRSL1--NOC4L	2	0	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	LU99_LUNG	1	1	0.0241	TRUE	3	48	0	26	0	FALSE	ACH-000444
LU99_LUNG	KCNQ5-IT1--KCNQ5	2	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	LU99_LUNG	1	1	0.0241	FALSE	1	11	0	34	0	FALSE	ACH-000444
LU99_LUNG	LARP4B--WDR37	2	0	LARP4B	1197	chr10:977368:-	WDR37	45113	chr10:1170158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LARP4B->La_ribonucleoprotein_domain_family_member_4B,chr10:855484-977564:-,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	LU99_LUNG	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	MB21D2--FGF12	2	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	LU99_LUNG	1	1	0.0241	FALSE	0	17	0	46	0	FALSE	ACH-000444
LU99_LUNG	RPSAP52--HMGA2	2	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	LU99_LUNG	1	1	0.0241	FALSE	0	59	0	125	0	FALSE	ACH-000444
LU99_LUNG	SCARB1--UBC	2	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	LU99_LUNG	1	1	0.0241	TRUE	55	66	6	101	0	FALSE	ACH-000444
LU99_LUNG	SLC25A21--CNTRL	2	0	SLC25A21	1586	chr14:37641486:-	CNTRL	50845	chr9:123916999:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21,CNTRL->Oncogene{Bushman},centriolin,chr9:123837141-123939888:+	LU99_LUNG	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	SUSD1--UGCG	2	0	SUSD1	17137	chr9:114840818:-	UGCG	27707	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	SUSD1->chr9:114803065-114937688:-,sushi_domain_containing_1,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	LU99_LUNG	1	1	0.0241	TRUE	0	1	0	1	1	TRUE	ACH-000444
LU99_LUNG	THOP1--CTD-2369P2.10	2	0	THOP1	1219	chr19:2785676:+	CTD-2369P2.10	20101	chr19:10426435:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	THOP1->chr19:2785458-2813599:+,thimet_oligopeptidase_1,CTD-2369P2.10->chr19:10416103-10426685:-	LU99_LUNG	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	TMEM18--DAZAP1	2	0	TMEM18	1151	chr2:677289:-	DAZAP1	15877	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},TMEM18->chr2:667335-677439:-,transmembrane_protein_18,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	LU99_LUNG	1	1	0.0241	TRUE	1	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	VAV2--BRD3	2	0	VAV2	1530	chr9:136857197:-	BRD3	42940	chr9:136918712:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[37701],VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,BRD3->Oncogene{Bushman},bromodomain_containing_3,chr9:136895427-136933657:-	LU99_LUNG	1	1	0.0241	TRUE	0	0	0	2	0	TRUE	ACH-000444
LU99_LUNG	WWC2--DCTD	2	0	WWC2	1330	chr4:184020775:+	DCTD	38209	chr4:183836728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},WWC2->WW_and_C2_domain_containing_2,chr4:184020446-184241930:+,DCTD->chr4:183811213-183839089:-,dCMP_deaminase	LU99_LUNG	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	APTX--ZNF169	1	3	APTX	11552	chr9:32984629:-	ZNF169	20682	chr9:97054623:+	ONLY_REF_SPLICE	NO	69	2	0.05	0.67	0.0121	0.0362	APTX->aprataxin,chr9:32972604-33025166:-,ZNF169->chr9:97021593-97063736:+,zinc_finger_protein_169	LU99_LUNG	0.05	0.67	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	CD44--PDHX	1	1	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	771	94	0	0.02	0.0121	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	LU99_LUNG	0	0.02	0.0242	FALSE	0	20	0	35	2	FALSE	ACH-000444
LU99_LUNG	DDX19B--SF3B3	1	1	DDX19B	3938	chr16:70333257:+	SF3B3	36710	chr16:70588349:+	ONLY_REF_SPLICE	YES	212	329	0.01	0.01	0.0121	0.0121	DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+,SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3	LU99_LUNG	0.01	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000444
LU99_LUNG	MAPK12--FSD1	1	1	MAPK12	6102	chr22:50693626:-	FSD1	24067	chr19:4311839:+	ONLY_REF_SPLICE	NO	62	68	0.03	0.03	0.0121	0.0121	MAPK12->Oncogene{Bushman},chr22:50683879-50700254:-,mitogen-activated_protein_kinase_12,FSD1->chr19:4304597-4323840:+,fibronectin_type_III_and_SPRY_domain_containing_1	LU99_LUNG	0.03	0.03	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000444
LU99_LUNG	MED13L--FAM101A	1	1	MED13L	1279	chr12:116714865:-	FAM101A	44451	chr12:124634141:+	ONLY_REF_SPLICE	YES	38	0	0.05	1	0.0121	0.0121	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,FAM101A->chr12:124457788-124800570:+,family_with_sequence_similarity_101_member_A	LU99_LUNG	0.05	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	PACS1--RP11-707M1.1	1	1	PACS1	1480	chr11:65838313:+	RP11-707M1.1	37864	chr11:49829207:+	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.0121	0.0121	PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1,RP11-707M1.1->chr11:49580098-49831971:+	LU99_LUNG	0.11	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000444
LU99_LUNG	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0121	0.0121	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LU99_LUNG	1	1	0.0242	FALSE	407	2205	196	549	0	FALSE	ACH-000444
LU99_LUNG	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0121	0.0121	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LU99_LUNG	1	1	0.0242	FALSE	467	2173	244	435	0	FALSE	ACH-000444
LU99_LUNG	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0.0121	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LU99_LUNG	1	1	0.0242	FALSE	515	4851	409	746	0	FALSE	ACH-000444
LU99_LUNG	SAMD12--EXT1	1	1	SAMD12	2373	chr8:119592954:-	EXT1	23526	chr8:118849440:-	ONLY_REF_SPLICE	YES	39	411	0.05	0	0.0121	0.0121	NEIGHBORS[77606],SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1	LU99_LUNG	0	0.05	0.0242	FALSE	0	4	0	6	0	FALSE	ACH-000444
NCIH358_LUNG	UBAP2--CCDC171	193	2	UBAP2	1125	chr9:34048823:-	CCDC171	65426	chr9:15846700:+	ONLY_REF_SPLICE	YES	0	5	1	0.97	1.7676	0.0183	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171	NCIH358_LUNG	0.97	1	1.7859	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	AC104389.28--HBE1	159	71	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	16	1	0.93	1	1.4562	0.6503	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NCIH358_LUNG	0.93	1	2.1065	TRUE	0	48	0	65	48	FALSE	ACH-000860
NCIH358_LUNG	TP53--GLP2R	137	24	TP53	1162	chr17:7590695:-	GLP2R	31841	chr17:9791249:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.2547	0.2198	TP53->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr17:7565097-7590856:-,tumor_protein_p53,GLP2R->chr17:9725523-9795419:+,glucagon_like_peptide_2_receptor	NCIH358_LUNG	1	1	1.4745	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	AC104389.28--HBE1	57	77	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	16	0	0.89	1	0.522	0.7052	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NCIH358_LUNG	0.89	1	1.2272	TRUE	0	35	0	55	35	FALSE	ACH-000860
NCIH358_LUNG	TIMM23B--LINC00843	69	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6319	0.1649	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH358_LUNG	1	1	0.7968	TRUE	508	994	45	981	0	FALSE	ACH-000860
NCIH358_LUNG	MYH9--FOXRED2	55	18	MYH9	16593	chr22:36710190:-	FOXRED2	48469	chr22:36897454:-	ONLY_REF_SPLICE	YES	458	68	0.14	0.52	0.5037	0.1649	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[99174],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,FOXRED2->FAD_dependent_oxidoreductase_domain_containing_2,chr22:36883237-36903148:-	NCIH358_LUNG	0.14	0.52	0.6686	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	MT-ND6--MT-TE	54	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4946	0.0458	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH358_LUNG	1	1	0.5404	FALSE	499	1288	110	792	0	FALSE	ACH-000860
NCIH358_LUNG	ZNF654--HMGB2	47	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4305	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH358_LUNG	1	1	0.4305	TRUE	0	0	0	518	0	FALSE	ACH-000860
NCIH358_LUNG	AP003900.6--AP000345.1	40	2	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	3	0	0.93	1	0.3663	0.0183	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH358_LUNG	0.93	1	0.3846	TRUE	4	17	0	31	0	FALSE	ACH-000860
NCIH358_LUNG	TIMM23--RP11-464F9.1	36	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	104	2	0.27	0.95	0.3297	0.0275	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH358_LUNG	0.27	0.95	0.3572	TRUE	519	3926	326	965	0	FALSE	ACH-000860
NCIH358_LUNG	RP11-59N23.1--CMAS	32	9	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	2	47	0.95	0.47	0.2931	0.0824	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH358_LUNG	0.47	0.95	0.3755	TRUE	21	102	17	28	0	FALSE	ACH-000860
NCIH358_LUNG	MT-TA--MT-TC	32	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2931	0.055	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH358_LUNG	1	1	0.3481	FALSE	462	80	0	856	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ND5--MT-ATP8	31	7	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2854	3	0.01	0.93	0.2839	0.0641	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH358_LUNG	0.01	0.93	0.348	FALSE	43	37	8	105	0	FALSE	ACH-000860
NCIH358_LUNG	GALK2--FAM214A	26	15	GALK2	9623	chr15:49493447:+	FAM214A	36116	chr15:52906054:-	ONLY_REF_SPLICE	YES	65	25	0.39	0.62	0.2381	0.1374	{Klijn_CCL:Lung=1},GALK2->chr15:49447853-49660066:+,galactokinase_2,FAM214A->chr15:52873514-53002014:-,family_with_sequence_similarity_214_member_A	NCIH358_LUNG	0.39	0.62	0.3755	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	MT-ND6--MT-TE	27	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2473	0.0458	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH358_LUNG	1	1	0.2931	FALSE	499	1288	110	792	0	FALSE	ACH-000860
NCIH358_LUNG	MT-CO3--MT-ATP6	14	32	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	7	0.94	0.87	0.1282	0.2931	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH358_LUNG	0.87	0.94	0.4213	FALSE	189	492	56	216	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ND5--MT-ATP8	20	6	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4689	32	0.01	0.45	0.1832	0.055	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH358_LUNG	0.01	0.45	0.2382	FALSE	43	37	8	105	0	FALSE	ACH-000860
NCIH358_LUNG	CIRH1A--VAC14	19	9	CIRH1A	7458	chr16:69173817:+	VAC14	37931	chr16:70778482:-	ONLY_REF_SPLICE	YES	128	51	0.18	0.35	0.174	0.0824	CIRH1A->chr16:69165194-69265033:+,VAC14->Oncogene{Bushman},Vac14,_PIKFYVE_complex_component,chr16:70721342-70835064:-	NCIH358_LUNG	0.18	0.35	0.2564	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	MT-ND5--MT-ATP8	16	15	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.1465	0.1374	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH358_LUNG	0.94	1	0.2839	FALSE	43	37	8	105	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ND6--MT-TE	15	18	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1374	0.1649	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH358_LUNG	1	1	0.3023	FALSE	499	1288	110	792	0	FALSE	ACH-000860
NCIH358_LUNG	AP003900.6--AP000345.1	18	4	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	7	0	0.76	1	0.1649	0.0366	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH358_LUNG	0.76	1	0.2015	TRUE	0	8	0	37	1	FALSE	ACH-000860
NCIH358_LUNG	RP11-314O13.1--CDYL2	18	1	RP11-314O13.1	1091	chr16:80926402:-	CDYL2	13750	chr16:80719026:-	ONLY_REF_SPLICE	YES	3	0	0.86	1	0.1649	0.0092	NEIGHBORS[24406],RP11-314O13.1->chr16:80862632-80926492:-,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	NCIH358_LUNG	0.86	1	0.1741	FALSE	0	0	0	3	0	FALSE	ACH-000860
NCIH358_LUNG	MT-TA--MT-TC	16	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1465	0.055	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH358_LUNG	1	1	0.2015	FALSE	462	80	0	856	0	FALSE	ACH-000860
NCIH358_LUNG	RP11-123O10.4--GRIP1	17	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1557	0.0092	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH358_LUNG	1	1	0.1649	FALSE	416	2512	207	587	0	FALSE	ACH-000860
NCIH358_LUNG	AC104389.28--HBE1	17	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1557	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NCIH358_LUNG	1	1	0.1557	TRUE	0	16	0	53	13	FALSE	ACH-000860
NCIH358_LUNG	RP11-96H19.1--RP11-446N19.1	15	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.94	0.94	0.1374	0.0183	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH358_LUNG	0.94	0.94	0.1557	FALSE	515	4851	409	746	0	FALSE	ACH-000860
NCIH358_LUNG	MIPEPP3--ABHD12	15	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1374	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	NCIH358_LUNG	1	1	0.1374	TRUE	64	202	9	44	0	FALSE	ACH-000860
NCIH358_LUNG	MT-CO3--MT-ATP6	6	36	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	4	43	0.91	0.49	0.055	0.3297	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH358_LUNG	0.49	0.91	0.3847	FALSE	189	492	56	216	0	FALSE	ACH-000860
NCIH358_LUNG	NPM1P24--SET	14	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1282	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH358_LUNG	1	1	0.1282	TRUE	0	0	0	434	0	FALSE	ACH-000860
NCIH358_LUNG	MT-CO3--MT-ATP6	5	35	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	14	7	0.74	0.85	0.0458	0.3206	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH358_LUNG	0.74	0.85	0.3664	FALSE	189	492	56	216	0	FALSE	ACH-000860
NCIH358_LUNG	NRIP1--AF127936.7	13	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	23	0	0.41	1	0.1191	0.0275	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH358_LUNG	0.41	1	0.1466	FALSE	164	806	69	479	0	FALSE	ACH-000860
NCIH358_LUNG	MT-CO3--MT-ATP6	3	38	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	NO	9	0	0.82	1	0.0275	0.348	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH358_LUNG	0.82	1	0.3755	FALSE	189	492	56	216	0	FALSE	ACH-000860
NCIH358_LUNG	TP53--GLP2R	8	18	TP53	1162	chr17:7590695:-	GLP2R	32883	chr17:9792687:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0733	0.1649	TP53->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr17:7565097-7590856:-,tumor_protein_p53,GLP2R->chr17:9725523-9795419:+,glucagon_like_peptide_2_receptor	NCIH358_LUNG	1	1	0.2382	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	MT-CO3--MT-ATP6	3	35	MT-CO3	1205	chrM:9411:+	MT-ATP6	5179	chrM:8921:+	INCL_NON_REF_SPLICE	YES	14	55	0.73	0.41	0.0275	0.3206	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH358_LUNG	0.41	0.73	0.3481	FALSE	189	492	56	216	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ND5--MT-ATP8	8	15	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0733	0.1374	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH358_LUNG	1	1	0.2107	FALSE	43	37	8	105	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ND6--MT-TE	5	27	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0.2473	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH358_LUNG	1	1	0.2931	FALSE	499	1288	110	792	0	FALSE	ACH-000860
NCIH358_LUNG	MT-CO3--MT-ATP6	3	33	MT-CO3	1126	chrM:9332:+	MT-ATP6	4943	chrM:8685:+	INCL_NON_REF_SPLICE	YES	1	9	0.97	0.8	0.0275	0.3022	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH358_LUNG	0.8	0.97	0.3297	FALSE	189	492	56	216	0	FALSE	ACH-000860
NCIH358_LUNG	PDE6B--PPP2R2D	11	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1007	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	NCIH358_LUNG	1	1	0.1007	TRUE	7	65	3	22	0	FALSE	ACH-000860
NCIH358_LUNG	MT-CO3--MT-ATP6	3	31	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.85	0.0275	0.2839	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH358_LUNG	0.85	1	0.3114	FALSE	189	492	56	216	0	FALSE	ACH-000860
NCIH358_LUNG	RP11-444D3.1--SOX5	10	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0916	0.0092	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH358_LUNG	1	1	0.1008	TRUE	477	1352	189	275	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ND6--MT-TE	3	28	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0275	0.2564	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH358_LUNG	1	1	0.2839	FALSE	499	1288	110	792	0	FALSE	ACH-000860
NCIH358_LUNG	CTD-2337A12.1--CAST	9	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	112	1	0.08	0.0824	0.0092	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH358_LUNG	0.08	1	0.0916	TRUE	347	1186	183	220	0	FALSE	ACH-000860
NCIH358_LUNG	MT-CO3--MT-ATP6	3	25	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	NO	1	1	0.97	0.97	0.0275	0.229	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH358_LUNG	0.97	0.97	0.2565	FALSE	189	492	56	216	0	FALSE	ACH-000860
NCIH358_LUNG	RP11-114H23.1--RP11-114H23.2	9	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0824	0.0092	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH358_LUNG	1	1	0.0916	FALSE	81	155	12	160	0	FALSE	ACH-000860
NCIH358_LUNG	PDE6B--PPP2R2D	9	0	PDE6B	1510	chr4:619882:+	PPP2R2D	25830	chr10:133753533:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0824	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	NCIH358_LUNG	1	1	0.0824	TRUE	5	45	2	9	0	FALSE	ACH-000860
NCIH358_LUNG	CCDC57--PACS1	7	6	CCDC57	24489	chr17:80109436:-	PACS1	46666	chr11:65960957:+	ONLY_REF_SPLICE	YES	31	21	0.3	0.38	0.0641	0.055	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	NCIH358_LUNG	0.3	0.38	0.1191	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	MT-CO3--MT-ATP6	7	5	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	10	0	0.55	1	0.0641	0.0458	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH358_LUNG	0.55	1	0.1099	FALSE	189	492	56	216	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ATP6--MT-CO1	8	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0733	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH358_LUNG	1	1	0.0733	FALSE	183	104	9	328	0	FALSE	ACH-000860
NCIH358_LUNG	MT-CO3--MT-ATP6	8	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0733	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH358_LUNG	1	1	0.0733	FALSE	189	492	56	216	0	FALSE	ACH-000860
NCIH358_LUNG	NRIP1--AF127936.7	8	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0733	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH358_LUNG	1	1	0.0733	FALSE	292	1546	117	613	0	FALSE	ACH-000860
NCIH358_LUNG	NRIP1--AF127936.7	8	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0733	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH358_LUNG	1	1	0.0733	FALSE	125	705	46	456	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ND6--MT-TE	3	19	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0.174	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH358_LUNG	1	1	0.2015	FALSE	499	1288	110	792	0	FALSE	ACH-000860
NCIH358_LUNG	RP11-314O13.1--CDYL2	7	3	RP11-314O13.1	3268	chr16:80874016:-	CDYL2	13750	chr16:80719026:-	ONLY_REF_SPLICE	YES	146	0	0.06	1	0.0641	0.0275	NEIGHBORS[24406],RP11-314O13.1->chr16:80862632-80926492:-,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	NCIH358_LUNG	0.06	1	0.0916	FALSE	0	0	0	4	0	FALSE	ACH-000860
NCIH358_LUNG	CDC42EP4--MLST8	7	2	CDC42EP4	8578	chr17:71280453:-	MLST8	13324	chr16:2255304:+	INCL_NON_REF_SPLICE	YES	12	0	0.43	1	0.0641	0.0183	CDC42EP4->CDC42_effector_protein_4,chr17:71279763-71308314:-,MLST8->MTOR_associated_protein,_LST8_homolog,chr16:2254249-2259417:+	NCIH358_LUNG	0.43	1	0.0824	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	RP11-476K15.1--CTD-2015H3.2	7	2	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0641	0.0183	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCIH358_LUNG	0.82	1	0.0824	FALSE	0	46	0	73	0	FALSE	ACH-000860
NCIH358_LUNG	CTD-2251F13.1--PRKD1	7	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0641	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH358_LUNG	1	1	0.0641	TRUE	0	3	0	9	3	TRUE	ACH-000860
NCIH358_LUNG	MT-ATP6--MT-CO1	7	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH358_LUNG	1	1	0.0641	FALSE	183	104	9	328	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ATP6--MT-CO1	7	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH358_LUNG	1	1	0.0641	FALSE	183	104	9	328	0	FALSE	ACH-000860
NCIH358_LUNG	MT-CO3--MT-ATP6	7	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH358_LUNG	1	1	0.0641	FALSE	189	492	56	216	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ND5--MT-ATP8	3	16	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0.1465	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH358_LUNG	1	1	0.174	FALSE	43	37	8	105	0	FALSE	ACH-000860
NCIH358_LUNG	GALK2--FAM214A	3	15	GALK2	9623	chr15:49493447:+	FAM214A	33267	chr15:52950994:-	ONLY_REF_SPLICE	YES	65	29	0.22	0.38	0.0275	0.1374	{Klijn_CCL:Lung=1},GALK2->chr15:49447853-49660066:+,galactokinase_2,FAM214A->chr15:52873514-53002014:-,family_with_sequence_similarity_214_member_A	NCIH358_LUNG	0.22	0.38	0.1649	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	MT-ND5--MT-ATP8	4	11	MT-ND5	2667	chrM:14003:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1363	0	0.01	1	0.0366	0.1007	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH358_LUNG	0.01	1	0.1373	FALSE	43	37	8	105	0	FALSE	ACH-000860
NCIH358_LUNG	RP11-96H19.1--RP11-446N19.1	6	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	1	0.89	0.89	0.055	0.0183	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH358_LUNG	0.89	0.89	0.0733	FALSE	407	2205	196	549	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH358_LUNG	1	1	0.055	FALSE	499	1288	110	792	0	FALSE	ACH-000860
NCIH358_LUNG	DPP3--OGFOD3	5	3	DPP3	9176	chr11:66259229:+	OGFOD3	30712	chr17:80351725:-	INCL_NON_REF_SPLICE	YES	66	127	0.11	0.06	0.0458	0.0275	DPP3->chr11:66247484-66277130:+,dipeptidyl_peptidase_3,OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-	NCIH358_LUNG	0.06	0.11	0.0733	TRUE	0	0	0	1	0	FALSE	ACH-000860
NCIH358_LUNG	FBXO39--RPAIN	5	2	FBXO39	1050	chr17:6679591:+	RPAIN	13913	chr17:5324616:+	ONLY_REF_SPLICE	YES	0	107	1	0.06	0.0458	0.0183	FBXO39->F-box_protein_39,chr17:6679542-6700420:+,RPAIN->RPA_interacting_protein,chr17:5322961-5336196:+	NCIH358_LUNG	0.06	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	MT-ND5--MT-ATP8	3	10	MT-ND5	2290	chrM:13626:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2463	0	0.01	1	0.0275	0.0916	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH358_LUNG	0.01	1	0.1191	FALSE	43	37	8	105	0	FALSE	ACH-000860
NCIH358_LUNG	CTD-2251F13.1--PRKD1	5	1	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0458	0.0092	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH358_LUNG	0.86	1	0.055	TRUE	0	3	0	8	3	TRUE	ACH-000860
NCIH358_LUNG	NPM1P24--SET	5	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	17	1606	0.26	0	0.0458	0.0092	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH358_LUNG	0	0.26	0.055	FALSE	0	0	0	434	0	FALSE	ACH-000860
NCIH358_LUNG	ST3GAL3--C1orf222	5	1	ST3GAL3	20706	chr1:44386600:+	C1orf222	49414	chr1:1878493:-	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.0458	0.0092	ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,C1orf222->chr1:1853396-1935276:-	NCIH358_LUNG	0.46	1	0.055	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	WWC2--ING2	4	5	WWC2	5601	chr4:184130178:+	ING2	38173	chr4:184431435:+	ONLY_REF_SPLICE	YES	11	54	0.45	0.14	0.0366	0.0458	WWC2->WW_and_C2_domain_containing_2,chr4:184020446-184241930:+,ING2->Oncogene{Bushman},chr4:184426147-184432249:+,inhibitor_of_growth_family_member_2	NCIH358_LUNG	0.14	0.45	0.0824	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	MT-ATP6--MT-CO1	5	0	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH358_LUNG	1	1	0.0458	FALSE	183	104	9	328	0	FALSE	ACH-000860
NCIH358_LUNG	MT-CO3--MT-ATP6	4	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.0366	0.0366	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH358_LUNG	0.73	1	0.0732	FALSE	189	492	56	216	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ND5--MT-ATP8	3	8	MT-ND5	2112	chrM:13448:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	4689	0	0	1	0.0275	0.0733	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH358_LUNG	0	1	0.1008	FALSE	43	37	8	105	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH358_LUNG	1	1	0.0458	FALSE	499	1288	110	792	0	FALSE	ACH-000860
NCIH358_LUNG	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH358_LUNG	1	1	0.0458	FALSE	462	80	0	856	0	FALSE	ACH-000860
NCIH358_LUNG	NUDT1--HACE1	5	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	NCIH358_LUNG	1	1	0.0458	TRUE	1	20	0	20	17	FALSE	ACH-000860
NCIH358_LUNG	RP11-155G15.2--RP11-1E3.1	5	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH358_LUNG	1	1	0.0458	FALSE	46	201	11	112	0	FALSE	ACH-000860
NCIH358_LUNG	AC027119.1--AC026167.1	4	3	AC027119.1	1674	chr3:6005202:+	AC026167.1	6915	chr3:6400588:+	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0366	0.0275	NEIGHBORS[24364],AC027119.1->chr3:6004529-6165807:+,AC026167.1->chr3:6190171-6407572:+	NCIH358_LUNG	0.7	1	0.0641	FALSE	1	37	1	9	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ND5--MT-ATP8	3	7	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	2	474	0.83	0.02	0.0275	0.0641	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH358_LUNG	0.02	0.83	0.0916	FALSE	43	37	8	105	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ND5--MT-ATP8	3	7	MT-ND5	1875	chrM:13211:+	MT-ATP8	5863	chrM:8416:+	INCL_NON_REF_SPLICE	YES	3953	0	0	1	0.0275	0.0641	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH358_LUNG	0	1	0.0916	FALSE	43	37	8	105	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ND5--MT-ATP8	3	5	MT-ND5	2514	chrM:13850:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	2453	474	0	0.02	0.0275	0.0458	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH358_LUNG	0	0.02	0.0733	FALSE	43	37	8	105	0	FALSE	ACH-000860
NCIH358_LUNG	COX7B2--GABRA2	4	0	COX7B2	5416	chr4:46846977:-	GABRA2	12684	chr4:46390733:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	COX7B2->chr4:46736844-46911252:-,cytochrome_c_oxidase_subunit_7B2,GABRA2->chr4:46250444-46477247:-,gamma-aminobutyric_acid_type_A_receptor_alpha2_subunit	NCIH358_LUNG	1	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	DPP3--OGFOD3	4	0	DPP3	9174	chr11:66259227:+	OGFOD3	32027	chr17:80350410:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	DPP3->chr11:66247484-66277130:+,dipeptidyl_peptidase_3,OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-	NCIH358_LUNG	1	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	LINC00624--FMO5	4	0	LINC00624	3701	chr1:146986158:-	FMO5	8747	chr1:146696658:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	LINC00624->chr1:146986158-146989699:-,long_intergenic_non-protein_coding_RNA_624,FMO5->chr1:146646930-146714700:-,flavin_containing_monooxygenase_5	NCIH358_LUNG	1	1	0.0366	TRUE	0	3	1	2	3	TRUE	ACH-000860
NCIH358_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0366	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH358_LUNG	1	1	0.0366	FALSE	183	104	9	328	0	FALSE	ACH-000860
NCIH358_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0366	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH358_LUNG	1	1	0.0366	FALSE	189	492	56	216	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ND5--MT-ATP8	4	0	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0366	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH358_LUNG	1	1	0.0366	FALSE	41	30	6	102	0	FALSE	ACH-000860
NCIH358_LUNG	UBAP2--CCDC171	4	0	UBAP2	1072	chr9:34048876:-	CCDC171	65426	chr9:15846700:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171	NCIH358_LUNG	1	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	AP003900.6--AP000345.1	3	3	AP003900.6	2233	chr21:11172089:+	AP000345.1	9030	chr22:23825313:-	INCL_NON_REF_SPLICE	YES	9	0	0.4	1	0.0275	0.0275	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH358_LUNG	0.4	1	0.055	TRUE	1	2	0	16	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ATP6--MT-CO1	3	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3007	17923	0	0	0.0275	0.0275	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH358_LUNG	0	0	0.055	FALSE	183	104	9	328	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	NO	5089	16288	0	0	0.0275	0.0183	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH358_LUNG	0	0	0.0458	FALSE	183	104	9	328	0	FALSE	ACH-000860
NCIH358_LUNG	RP11-476K15.1--CTD-2015H3.2	3	2	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0275	0.0183	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCIH358_LUNG	0.71	1	0.0458	FALSE	0	46	0	73	0	FALSE	ACH-000860
NCIH358_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1158	chrM:9364:+	MT-ATP6	5461	chrM:9203:+	INCL_NON_REF_SPLICE	NO	8	0	0.33	1	0.0275	0.0092	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH358_LUNG	0.33	1	0.0367	FALSE	189	492	56	216	0	FALSE	ACH-000860
NCIH358_LUNG	NPM1P24--SET	3	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	17	1488	0.19	0	0.0275	0.0092	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH358_LUNG	0	0.19	0.0367	FALSE	0	0	0	434	0	FALSE	ACH-000860
NCIH358_LUNG	RP11-123O10.4--GRIP1	3	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0.0092	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH358_LUNG	1	1	0.0367	FALSE	93	270	15	244	0	FALSE	ACH-000860
NCIH358_LUNG	RP11-59N23.3--RP11-729I10.2	3	1	RP11-59N23.3	2631	chr12:21913019:+	RP11-729I10.2	5579	chr12:21980144:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0.0092	NEIGHBORS[67178],RP11-59N23.3->chr12:21815247-21912966:+,RP11-729I10.2->chr12:21980144-22040891:+	NCIH358_LUNG	1	1	0.0367	FALSE	0	0	0	1	0	FALSE	ACH-000860
NCIH358_LUNG	CTD-2544M6.1--LINC00923	3	0	CTD-2544M6.1	4364	chr15:98589896:-	LINC00923	10269	chr15:98301891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	CTD-2544M6.1->chr15:98589896-98836406:-,LINC00923->chr15:98285448-98417780:-,long_intergenic_non-protein_coding_RNA_923	NCIH358_LUNG	1	1	0.0275	TRUE	0	3	0	6	3	TRUE	ACH-000860
NCIH358_LUNG	EIF1--RPL5	3	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	NCIH358_LUNG	1	1	0.0275	TRUE	0	0	0	39	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH358_LUNG	1	1	0.0275	FALSE	183	104	9	328	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH358_LUNG	1	1	0.0275	FALSE	182	97	9	327	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1063	chrM:8589:+	MT-CO1	5236	chrM:6458:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH358_LUNG	1	1	0.0275	FALSE	183	104	9	328	0	FALSE	ACH-000860
NCIH358_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH358_LUNG	1	1	0.0275	FALSE	183	104	9	328	0	FALSE	ACH-000860
NCIH358_LUNG	AP003900.6--AP000345.1	2	2	AP003900.6	2187	chr21:11172043:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	9	0	0.31	1	0.0183	0.0183	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH358_LUNG	0.31	1	0.0366	TRUE	1	2	0	16	0	FALSE	ACH-000860
NCIH358_LUNG	UBAP2--CCDC171	2	2	UBAP2	1125	chr9:34048823:-	CCDC171	64363	chr9:15845637:+	ONLY_REF_SPLICE	YES	0	5	1	0.44	0.0183	0.0183	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171	NCIH358_LUNG	0.44	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	CTD-2337A12.1--CAST	2	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	129	1	0.02	0.0183	0.0092	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH358_LUNG	0.02	1	0.0275	TRUE	15	36	8	26	0	FALSE	ACH-000860
NCIH358_LUNG	SNX25--SPOCK3	2	1	SNX25	10527	chr4:186231970:+	SPOCK3	33881	chr4:167983688:-	ONLY_REF_SPLICE	YES	11	6	0.21	0.33	0.0183	0.0092	SNX25->chr4:186125391-186291339:+,sorting_nexin_25,SPOCK3->chr4:167654535-168155947:-,sparc/osteonectin,_cwcv_and_kazal-like_domains_proteoglycan_(testican)_3	NCIH358_LUNG	0.21	0.33	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	ST3GAL3--C1orf222	2	1	ST3GAL3	20706	chr1:44386600:+	C1orf222	50029	chr1:1877878:-	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0183	0.0092	ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,C1orf222->chr1:1853396-1935276:-	NCIH358_LUNG	0.3	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	AC104389.28--HBE1	2	0	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NCIH358_LUNG	1	1	0.0183	TRUE	0	11	0	26	8	FALSE	ACH-000860
NCIH358_LUNG	APOA1BP--RPL4	2	0	APOA1BP	1448	chr1:156562001:+	RPL4	11401	chr15:66795088:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	APOA1BP->chr1:156561554-156564091:+,RPL4->chr15:66790355-66816870:-,ribosomal_protein_L4	NCIH358_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	CMTM8--CMTM7	2	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	NCIH358_LUNG	1	1	0.0183	FALSE	118	557	29	88	0	FALSE	ACH-000860
NCIH358_LUNG	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH358_LUNG	1	1	0.0183	TRUE	0	1	0	7	1	TRUE	ACH-000860
NCIH358_LUNG	TXN--FCRL2	2	0	TXN	4211	chr9:113007058:-	FCRL2	15343	chr1:157719467:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	TXN->Oncogene{Bushman},chr9:113006091-113018920:-,thioredoxin,FCRL2->Fc_receptor_like_2,chr1:157715523-157746922:-	NCIH358_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	GALK2--FAM214A	1	3	GALK2	9623	chr15:49493447:+	FAM214A	37301	chr15:52903974:-	ONLY_REF_SPLICE	YES	65	21	0.06	0.16	0.0092	0.0275	{Klijn_CCL:Lung=1},GALK2->chr15:49447853-49660066:+,galactokinase_2,FAM214A->chr15:52873514-53002014:-,family_with_sequence_similarity_214_member_A	NCIH358_LUNG	0.06	0.16	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	23	7	0.12	0.3	0.0092	0.0183	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH358_LUNG	0.12	0.3	0.0275	FALSE	8	57	1	47	0	FALSE	ACH-000860
NCIH358_LUNG	RP11-368L12.1--RP11-96H17.1	1	2	RP11-368L12.1	4754	chr16:63368504:-	RP11-96H17.1	10295	chr16:63153269:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0092	0.0183	GTEx_FI:{Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4]},RP11-368L12.1->chr16:63348168-63651950:-,RP11-96H17.1->chr16:63090690-63163558:-	NCIH358_LUNG	1	1	0.0275	TRUE	1	3	0	2	3	TRUE	ACH-000860
NCIH358_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0092	0.0183	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH358_LUNG	0.75	1	0.0275	FALSE	275	511	55	178	0	FALSE	ACH-000860
NCIH358_LUNG	AC027119.1--AC026167.1	1	1	AC027119.1	1674	chr3:6005202:+	AC026167.1	7962	chr3:6407416:+	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0092	0.0092	NEIGHBORS[24364],AC027119.1->chr3:6004529-6165807:+,AC026167.1->chr3:6190171-6407572:+	NCIH358_LUNG	0.4	1	0.0184	FALSE	0	10	0	3	0	FALSE	ACH-000860
NCIH358_LUNG	BTBD2--FCRL2	1	1	BTBD2	4938	chr19:2015296:-	FCRL2	26182	chr1:157719467:-	ONLY_REF_SPLICE	YES	42	0	0.05	1	0.0092	0.0092	BTBD2->BTB_domain_containing_2,chr19:1985447-2034880:-,FCRL2->Fc_receptor_like_2,chr1:157715523-157746922:-	NCIH358_LUNG	0.05	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000860
NCIH358_LUNG	CCT3--C1orf61	1	1	CCT3	2442	chr1:156307945:-	C1orf61	20223	chr1:156399911:-	ONLY_REF_SPLICE	YES	390	0	0.01	1	0.0092	0.0092	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[36378],CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-,C1orf61->chr1:156374042-156400493:-,chromosome_1_open_reading_frame_61	NCIH358_LUNG	0.01	1	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000860
NCIH358_LUNG	KLHL2--UBE3A	1	1	KLHL2	1285	chr4:166129054:+	UBE3A	40322	chr15:25585375:-	ONLY_REF_SPLICE	NO	15	152	0.12	0.01	0.0092	0.0092	KLHL2->chr4:166128770-166244308:+,kelch_like_family_member_2,UBE3A->Oncogene{Bushman},chr15:25582381-25684128:-,ubiquitin_protein_ligase_E3A	NCIH358_LUNG	0.01	0.12	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000860
NCIH358_LUNG	RP11-59N23.3--RP11-729I10.2	1	1	RP11-59N23.3	1459	chr12:21815705:+	RP11-729I10.2	5579	chr12:21980144:+	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0092	0.0092	NEIGHBORS[67178],RP11-59N23.3->chr12:21815247-21912966:+,RP11-729I10.2->chr12:21980144-22040891:+	NCIH358_LUNG	0.29	1	0.0184	FALSE	0	2	0	4	0	FALSE	ACH-000860
NCIH358_LUNG	TYMS--PRKCA	1	1	TYMS	4286	chr18:662320:+	PRKCA	36886	chr17:64799991:+	ONLY_REF_SPLICE	YES	248	22	0.01	0.08	0.0092	0.0092	TYMS->chr18:657604-673578:+,thymidylate_synthetase,PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha	NCIH358_LUNG	0.01	0.08	0.0184	FALSE	0	1	0	1	0	FALSE	ACH-000860
NCIH358_LUNG	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1296	44	0	0.04	0.0092	0.0092	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NCIH358_LUNG	0	0.04	0.0184	FALSE	6	50	7	115	0	FALSE	ACH-000860
IGROV1_OVARY	RAB3B--TXNDC12	77	28	RAB3B	1213	chr1:52456224:-	TXNDC12	26813	chr1:52494302:-	ONLY_REF_SPLICE	YES	94	285	0.53	0.27	0.9024	0.3281	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[29367],RAB3B->RAB3B,_member_RAS_oncogene_family,chr1:52373628-52456436:-,TXNDC12->chr1:52485803-52521843:-,thioredoxin_domain_containing_12	IGROV1_OVARY	0.27	0.53	1.2305	TRUE	0	0	0	1	0	TRUE	ACH-000966
IGROV1_OVARY	TIMM23B--LINC00843	72	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8438	0.2695	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	IGROV1_OVARY	1	1	1.1133	TRUE	508	994	45	981	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND1--MT-RNR2	67	7	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	NO	47	150	0.61	0.33	0.7852	0.082	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IGROV1_OVARY	0.33	0.61	0.8672	FALSE	92	22	4	61	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND6--MT-TE	50	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.586	0.0469	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGROV1_OVARY	0.98	1	0.6329	FALSE	499	1288	110	792	0	FALSE	ACH-000966
IGROV1_OVARY	TIMM23--RP11-464F9.1	38	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	160	6	0.2	0.87	0.4453	0.0234	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	IGROV1_OVARY	0.2	0.87	0.4687	TRUE	519	3926	326	965	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND5--MT-ATP8	36	8	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4584	5	0.01	0.9	0.4219	0.0938	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	0.01	0.9	0.5157	FALSE	43	37	8	105	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND4--MT-ND4L	5	122	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	14	0	0.9	1	0.0586	1.4298	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGROV1_OVARY	0.9	1	1.4884	FALSE	344	826	44	306	0	FALSE	ACH-000966
IGROV1_OVARY	MT-TA--MT-TC	34	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3985	0.0586	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IGROV1_OVARY	1	1	0.4571	FALSE	462	80	0	856	0	FALSE	ACH-000966
IGROV1_OVARY	PLXDC1--TAF13	29	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3399	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	IGROV1_OVARY	1	1	0.3399	TRUE	7	10	0	216	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND5--MT-ATP8	23	13	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	6	0	0.86	1	0.2695	0.1524	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	0.86	1	0.4219	FALSE	43	37	8	105	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND4--MT-ND4L	3	90	MT-ND4	1466	chrM:11225:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	210	0	0.31	1	0.0352	1.0547	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGROV1_OVARY	0.31	1	1.0899	FALSE	344	827	44	306	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND4--MT-ND4L	4	84	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	0	0.94	1	0.0469	0.9844	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGROV1_OVARY	0.94	1	1.0313	FALSE	344	821	44	306	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND6--MT-TE	22	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2578	0.0469	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGROV1_OVARY	0.96	1	0.3047	FALSE	499	1288	110	792	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND6--MT-TE	18	19	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.2109	0.2227	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGROV1_OVARY	0.9	1	0.4336	FALSE	499	1288	110	792	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND5--MT-ATP8	20	6	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5992	47	0	0.36	0.2344	0.0703	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	0	0.36	0.3047	FALSE	43	37	8	105	0	FALSE	ACH-000966
IGROV1_OVARY	CTDNEP1--CLDN7	19	3	CTDNEP1	2297	chr17:7154514:-	CLDN7	12862	chr17:7164304:-	ONLY_REF_SPLICE	YES	52	12	0.3	0.65	0.2227	0.0352	LOCAL_REARRANGEMENT:-:[7412],CTDNEP1->CTD_nuclear_envelope_phosphatase_1,chr17:7146910-7155810:-,CLDN7->chr17:7163222-7167302:-,claudin_7	IGROV1_OVARY	0.3	0.65	0.2579	TRUE	0	0	0	1	0	TRUE	ACH-000966
IGROV1_OVARY	RAB3B--TXNDC12	7	31	RAB3B	1213	chr1:52456224:-	TXNDC12	25631	chr1:52496220:-	ONLY_REF_SPLICE	YES	94	361	0.29	0.1	0.082	0.3633	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[29367],RAB3B->RAB3B,_member_RAS_oncogene_family,chr1:52373628-52456436:-,TXNDC12->chr1:52485803-52521843:-,thioredoxin_domain_containing_12	IGROV1_OVARY	0.1	0.29	0.4453	TRUE	0	0	0	1	0	TRUE	ACH-000966
IGROV1_OVARY	MT-ND4--MT-ND4L	9	20	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	17	0	0.63	1	0.1055	0.2344	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGROV1_OVARY	0.63	1	0.3399	FALSE	344	826	44	306	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND4--MT-ND4L	5	34	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	382	0	0.09	1	0.0586	0.3985	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGROV1_OVARY	0.09	1	0.4571	FALSE	344	827	44	306	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND4--MT-ND4L	7	21	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	5171	0	0.01	1	0.082	0.2461	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGROV1_OVARY	0.01	1	0.3281	FALSE	344	827	44	306	0	FALSE	ACH-000966
IGROV1_OVARY	CTDNEP1--CLDN7	9	8	CTDNEP1	2297	chr17:7154514:-	CLDN7	11504	chr17:7165662:-	ONLY_REF_SPLICE	YES	52	1	0.25	0.94	0.1055	0.0938	LOCAL_REARRANGEMENT:-:[7412],CTDNEP1->CTD_nuclear_envelope_phosphatase_1,chr17:7146910-7155810:-,CLDN7->chr17:7163222-7167302:-,claudin_7	IGROV1_OVARY	0.25	0.94	0.1993	TRUE	0	0	0	1	0	TRUE	ACH-000966
IGROV1_OVARY	MT-ND6--MT-ND5	10	3	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	3509	1	0	0.1172	0.0352	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	IGROV1_OVARY	0	1	0.1524	FALSE	101	855	57	72	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND6--MT-TE	4	27	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.0469	0.3164	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGROV1_OVARY	0.89	1	0.3633	FALSE	499	1288	110	792	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND5--MT-ATP8	6	17	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0.1992	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	1	1	0.2695	FALSE	43	37	8	105	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND4--MT-ND4L	7	11	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	36	0	0.33	1	0.082	0.1289	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGROV1_OVARY	0.33	1	0.2109	FALSE	344	827	44	306	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND6--MT-TE	3	27	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	5	0	0.86	1	0.0352	0.3164	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGROV1_OVARY	0.86	1	0.3516	FALSE	499	1288	110	792	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND6--MT-TE	3	27	MT-ND6	1289	chrM:14385:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	6	0	0.83	1	0.0352	0.3164	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGROV1_OVARY	0.83	1	0.3516	FALSE	499	1288	110	792	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND6--MT-TE	3	25	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.0352	0.293	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGROV1_OVARY	0.88	1	0.3282	FALSE	499	1288	110	792	0	FALSE	ACH-000966
IGROV1_OVARY	MT-TA--MT-TC	8	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0938	0.0586	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IGROV1_OVARY	1	1	0.1524	FALSE	462	80	0	856	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND1--MT-RNR2	8	4	MT-ND1	1027	chrM:3333:+	MT-RNR2	6484	chrM:3198:+	INCL_NON_REF_SPLICE	YES	1	1	0.92	0.92	0.0938	0.0469	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IGROV1_OVARY	0.92	0.92	0.1407	FALSE	92	21	4	61	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND3--MT-ATP8	9	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1055	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	1	1	0.1055	FALSE	351	233	23	137	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND5--MT-ATP8	5	16	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0586	0.1875	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	0.95	1	0.2461	FALSE	43	37	8	105	0	FALSE	ACH-000966
IGROV1_OVARY	CALM3--MT-ND4L	8	3	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1283	0	0.01	1	0.0938	0.0352	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGROV1_OVARY	0.01	1	0.129	FALSE	1	1	0	107	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND5--MT-ATP8	4	16	MT-ND5	2792	chrM:14128:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0.1875	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	1	1	0.2344	FALSE	43	37	8	105	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND5--MT-ATP8	6	8	MT-ND5	2641	chrM:13977:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2298	5	0.01	0.74	0.0703	0.0938	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	0.01	0.74	0.1641	FALSE	43	37	8	105	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND6--MT-TE	3	19	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.0352	0.2227	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGROV1_OVARY	0.85	1	0.2579	FALSE	499	1288	110	792	0	FALSE	ACH-000966
IGROV1_OVARY	RP11-123O10.4--GRIP1	7	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.082	0.0234	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	IGROV1_OVARY	1	1	0.1054	FALSE	416	2512	207	587	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND5--MT-ATP8	5	9	MT-ND5	2687	chrM:14023:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	859	5	0.02	0.74	0.0586	0.1055	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	0.02	0.74	0.1641	FALSE	43	37	8	105	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND5--MT-ATP8	4	13	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0.1524	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	1	1	0.1993	FALSE	43	37	8	105	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND6--MT-TE	5	9	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0586	0.1055	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGROV1_OVARY	0.93	1	0.1641	FALSE	499	1288	110	792	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND1--MT-RNR2	4	12	MT-ND1	1297	chrM:3603:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	16	0	0.5	1	0.0469	0.1406	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IGROV1_OVARY	0.5	1	0.1875	FALSE	114	26	4	85	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND1--MT-RNR2	5	8	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	12	8548	0.52	0	0.0586	0.0938	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IGROV1_OVARY	0	0.52	0.1524	FALSE	120	26	5	87	0	FALSE	ACH-000966
IGROV1_OVARY	MTATP6P1--MT-ND1	7	0	MTATP6P1	1126	chr1:569201:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.082	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	IGROV1_OVARY	1	1	0.082	FALSE	16	0	0	13	0	FALSE	ACH-000966
IGROV1_OVARY	NPM1P24--SET	7	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.082	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	IGROV1_OVARY	1	1	0.082	TRUE	0	0	0	434	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND1--MT-RNR2	4	11	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	12	0	0.56	1	0.0469	0.1289	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IGROV1_OVARY	0.56	1	0.1758	FALSE	114	26	4	85	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND4--MT-ND4L	4	11	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	19	0	0.44	1	0.0469	0.1289	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGROV1_OVARY	0.44	1	0.1758	FALSE	344	826	44	306	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND5--MT-ATP8	4	11	MT-ND5	2813	chrM:14149:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.75	0.0469	0.1289	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	0.75	1	0.1758	FALSE	43	37	8	105	0	FALSE	ACH-000966
IGROV1_OVARY	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0.0117	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IGROV1_OVARY	1	1	0.082	FALSE	462	80	0	856	0	FALSE	ACH-000966
IGROV1_OVARY	POLR3E--NPIPB5	5	5	POLR3E	4799	chr16:22316527:+	NPIPB5	43199	chr16:22524843:+	ONLY_REF_SPLICE	YES	70	104	0.12	0.09	0.0586	0.0586	POLR3E->chr16:22308730-22346424:+,polymerase_(RNA)_III_subunit_E,NPIPB5->chr16:22490442-22547842:+,nuclear_pore_complex_interacting_protein_family_member_B5	IGROV1_OVARY	0.09	0.12	0.1172	TRUE	0	0	0	1	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND1--MT-RNR2	4	8	MT-ND1	1409	chrM:3715:+	MT-RNR2	5520	chrM:2234:+	INCL_NON_REF_SPLICE	YES	53	8858	0.18	0	0.0469	0.0938	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IGROV1_OVARY	0	0.18	0.1407	FALSE	120	26	5	87	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND1--MT-RNR2	3	11	MT-ND1	1308	chrM:3614:+	MT-RNR2	5013	chrM:1727:+	INCL_NON_REF_SPLICE	YES	19	0	0.42	1	0.0352	0.1289	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IGROV1_OVARY	0.42	1	0.1641	FALSE	114	26	4	85	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND4--MT-ND4L	3	11	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0352	0.1289	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGROV1_OVARY	0.88	1	0.1641	FALSE	344	821	44	306	0	FALSE	ACH-000966
IGROV1_OVARY	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0469	0.082	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	IGROV1_OVARY	1	1	0.1289	FALSE	467	2173	244	435	0	FALSE	ACH-000966
IGROV1_OVARY	RP11-96H19.1--RP11-446N19.1	5	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0586	0.0352	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	IGROV1_OVARY	1	1	0.0938	FALSE	515	4851	409	746	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND5--MT-ATP8	3	10	MT-ND5	2167	chrM:13503:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	4801	0	0	1	0.0352	0.1172	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	0	1	0.1524	FALSE	43	37	8	105	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND5--MT-ATP8	3	9	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	4756	0	0	1	0.0352	0.1055	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	0	1	0.1407	FALSE	43	37	8	105	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND5--MT-ATP8	3	9	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	3775	1	0	0.92	0.0352	0.1055	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	0	0.92	0.1407	FALSE	43	37	8	105	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND1--MT-RNR2	3	8	MT-ND1	1227	chrM:3533:+	MT-RNR2	5558	chrM:2272:+	INCL_NON_REF_SPLICE	YES	10	8603	0.52	0	0.0352	0.0938	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IGROV1_OVARY	0	0.52	0.129	FALSE	120	26	5	87	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND1--MT-RNR2	3	8	MT-ND1	1753	chrM:4059:+	MT-RNR2	5532	chrM:2246:+	INCL_NON_REF_SPLICE	YES	805	8409	0.01	0	0.0352	0.0938	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IGROV1_OVARY	0	0.01	0.129	FALSE	120	26	5	87	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND1--MT-RNR2	3	8	MT-ND1	1461	chrM:3767:+	MT-RNR2	5525	chrM:2239:+	INCL_NON_REF_SPLICE	YES	83	8712	0.12	0	0.0352	0.0938	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IGROV1_OVARY	0	0.12	0.129	FALSE	120	26	5	87	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND1--MT-RNR2	3	8	MT-ND1	1715	chrM:4021:+	MT-RNR2	5548	chrM:2262:+	INCL_NON_REF_SPLICE	YES	664	8527	0.02	0	0.0352	0.0938	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IGROV1_OVARY	0	0.02	0.129	FALSE	120	26	5	87	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND2--MT-RNR2	5	0	MT-ND2	1438	chrM:4907:+	MT-RNR2	5785	chrM:2413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0586	0	LOCAL_REARRANGEMENT:+:[1241],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IGROV1_OVARY	1	1	0.0586	FALSE	19	92	8	6	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND3--MT-ATP8	5	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0586	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	1	1	0.0586	FALSE	351	233	23	137	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND6--MT-ND5	5	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0586	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	IGROV1_OVARY	1	1	0.0586	FALSE	101	855	57	72	0	FALSE	ACH-000966
IGROV1_OVARY	MTATP6P1--MT-ND1	5	0	MTATP6P1	1127	chr1:569202:+	MT-ND1	5166	chrM:3791:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0586	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	IGROV1_OVARY	1	1	0.0586	FALSE	16	0	0	13	0	FALSE	ACH-000966
IGROV1_OVARY	MTATP6P1--MT-ND1	5	0	MTATP6P1	1158	chr1:569233:+	MT-ND1	5165	chrM:3790:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0586	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	IGROV1_OVARY	1	1	0.0586	FALSE	16	0	0	13	0	FALSE	ACH-000966
IGROV1_OVARY	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0586	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGROV1_OVARY	1	1	0.0586	FALSE	0	0	0	189	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND2--MT-RNR2	4	3	MT-ND2	1879	chrM:5348:+	MT-RNR2	5597	chrM:2225:+	INCL_NON_REF_SPLICE	YES	3514	8814	0	0	0.0469	0.0352	LOCAL_REARRANGEMENT:+:[1241],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IGROV1_OVARY	0	0	0.0821	FALSE	19	92	8	6	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND6--MT-TE	3	7	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	3	0	0.77	1	0.0352	0.082	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGROV1_OVARY	0.77	1	0.1172	FALSE	499	1288	110	792	0	FALSE	ACH-000966
IGROV1_OVARY	MTATP6P1--MT-ND1	4	2	MTATP6P1	1415	chr1:569490:+	MT-ND1	5181	chrM:3806:+	INCL_NON_REF_SPLICE	NO	2081	9288	0	0	0.0469	0.0234	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	IGROV1_OVARY	0	0	0.0703	FALSE	16	0	0	13	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND2--MT-RNR2	4	1	MT-ND2	1459	chrM:4928:+	MT-RNR2	5624	chrM:2252:+	INCL_NON_REF_SPLICE	YES	10708	8543	0	0	0.0469	0.0117	LOCAL_REARRANGEMENT:+:[1241],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IGROV1_OVARY	0	0	0.0586	FALSE	19	92	8	6	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND5--MT-ATP8	4	1	MT-ND5	1331	chrM:12667:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	5977	0	0	1	0.0469	0.0117	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	0	1	0.0586	FALSE	42	35	7	104	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGROV1_OVARY	1	1	0.0469	FALSE	344	821	44	306	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND4--MT-ND4L	4	0	MT-ND4	1056	chrM:10815:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGROV1_OVARY	1	1	0.0469	FALSE	344	821	44	306	0	FALSE	ACH-000966
IGROV1_OVARY	MTATP6P1--MT-ND1	4	0	MTATP6P1	1144	chr1:569219:+	MT-ND1	5195	chrM:3820:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	IGROV1_OVARY	1	1	0.0469	FALSE	16	0	0	13	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND5--MT-ATP8	3	3	MT-ND5	1575	chrM:12911:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4510	47	0	0.11	0.0352	0.0352	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	0	0.11	0.0704	FALSE	42	36	7	104	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND6--MT-ND5	3	3	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	2000	1	0	0.0352	0.0352	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	IGROV1_OVARY	0	1	0.0704	FALSE	101	855	57	72	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND2--MT-RNR2	3	2	MT-ND2	1434	chrM:4903:+	MT-RNR2	5084	chrM:1712:+	INCL_NON_REF_SPLICE	YES	11082	0	0	1	0.0352	0.0234	LOCAL_REARRANGEMENT:+:[1241],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IGROV1_OVARY	0	1	0.0586	FALSE	19	92	8	6	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND2--MT-RNR2	3	1	MT-ND2	1720	chrM:5189:+	MT-RNR2	5630	chrM:2258:+	INCL_NON_REF_SPLICE	YES	7548	8700	0	0	0.0352	0.0117	LOCAL_REARRANGEMENT:+:[1241],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IGROV1_OVARY	0	0	0.0469	FALSE	19	92	8	6	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND3--MT-ATP8	3	1	MT-ND3	1241	chrM:10299:+	MT-ATP8	4419	chrM:8438:+	INCL_NON_REF_SPLICE	YES	355	0	0.01	1	0.0352	0.0117	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGROV1_OVARY	0.01	1	0.0469	FALSE	351	233	23	137	0	FALSE	ACH-000966
IGROV1_OVARY	POLR3E--NPIPB5	3	1	POLR3E	4799	chr16:22316527:+	NPIPB5	43441	chr16:22525085:+	ONLY_REF_SPLICE	YES	70	129	0.05	0.03	0.0352	0.0117	POLR3E->chr16:22308730-22346424:+,polymerase_(RNA)_III_subunit_E,NPIPB5->chr16:22490442-22547842:+,nuclear_pore_complex_interacting_protein_family_member_B5	IGROV1_OVARY	0.03	0.05	0.0469	TRUE	0	0	0	1	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGROV1_OVARY	1	1	0.0352	FALSE	344	821	44	306	0	FALSE	ACH-000966
IGROV1_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGROV1_OVARY	1	1	0.0352	FALSE	499	1288	110	792	0	FALSE	ACH-000966
IGROV1_OVARY	MTATP6P1--MT-ND1	3	0	MTATP6P1	1108	chr1:569183:+	MT-ND1	4706	chrM:3331:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	IGROV1_OVARY	1	1	0.0352	FALSE	16	0	0	13	0	FALSE	ACH-000966
IGROV1_OVARY	NID2--RP11-1033H12.1	3	0	NID2	11341	chr14:52495440:-	RP11-1033H12.1	28226	chr14:52578039:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	LOCAL_REARRANGEMENT:-:[42128],NID2->chr14:52471521-52535712:-,nidogen_2,RP11-1033H12.1->chr14:52577840-52596343:-	IGROV1_OVARY	1	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000966
IGROV1_OVARY	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	IGROV1_OVARY	1	1	0.0352	TRUE	458	1351	185	561	0	FALSE	ACH-000966
IGROV1_OVARY	POLR3E--NPIPB5	1	5	POLR3E	4799	chr16:22316527:+	NPIPB5	41672	chr16:22518658:+	ONLY_REF_SPLICE	YES	70	73	0.08	0.08	0.0117	0.0586	POLR3E->chr16:22308730-22346424:+,polymerase_(RNA)_III_subunit_E,NPIPB5->chr16:22490442-22547842:+,nuclear_pore_complex_interacting_protein_family_member_B5	IGROV1_OVARY	0.08	0.08	0.0703	TRUE	0	0	0	1	0	FALSE	ACH-000966
IGROV1_OVARY	RP11-283I3.4--KDM5A	2	1	RP11-283I3.4	1827	chr12:365639:-	KDM5A	38663	chr12:395373:-	ONLY_REF_SPLICE	YES	0	30	1	0.09	0.0234	0.0117	LOCAL_REARRANGEMENT:-:[22830],RP11-283I3.4->chr12:362608-366465:-,KDM5A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:389295-498620:-,lysine_demethylase_5A	IGROV1_OVARY	0.09	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000966
IGROV1_OVARY	SLC16A12--LIPA	2	1	SLC16A12	5062	chr10:91222136:-	LIPA	29664	chr10:91007406:-	ONLY_REF_SPLICE	NO	12	19	0.2	0.14	0.0234	0.0117	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	IGROV1_OVARY	0.14	0.2	0.0351	FALSE	12	128	21	13	0	FALSE	ACH-000966
IGROV1_OVARY	CTDNEP1--CLDN7	2	0	CTDNEP1	1078	chr17:7155733:-	CLDN7	12862	chr17:7164304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	LOCAL_REARRANGEMENT:-:[7412],CTDNEP1->CTD_nuclear_envelope_phosphatase_1,chr17:7146910-7155810:-,CLDN7->chr17:7163222-7167302:-,claudin_7	IGROV1_OVARY	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000966
IGROV1_OVARY	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	IGROV1_OVARY	1	1	0.0234	TRUE	465	1949	224	605	0	FALSE	ACH-000966
IGROV1_OVARY	POLR3E--NPIPB5	1	2	POLR3E	1129	chr16:22308858:+	NPIPB5	41672	chr16:22518658:+	ONLY_REF_SPLICE	NO	35	73	0.08	0.04	0.0117	0.0234	POLR3E->chr16:22308730-22346424:+,polymerase_(RNA)_III_subunit_E,NPIPB5->chr16:22490442-22547842:+,nuclear_pore_complex_interacting_protein_family_member_B5	IGROV1_OVARY	0.04	0.08	0.0351	TRUE	0	0	0	1	0	FALSE	ACH-000966
IGROV1_OVARY	GOLPH3--ZFR	1	1	GOLPH3	1541	chr5:32173916:-	ZFR	30180	chr5:32364381:-	ONLY_REF_SPLICE	YES	19	75	0.1	0.03	0.0117	0.0117	GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3,ZFR->chr5:32354456-32444867:-,zinc_finger_RNA_binding_protein	IGROV1_OVARY	0.03	0.1	0.0234	TRUE	0	1	0	1	0	FALSE	ACH-000966
IGROV1_OVARY	RTTN--SOHLH1	1	1	RTTN	52581	chr18:67684643:-	SOHLH1	59563	chr9:138590972:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0117	0.0117	RTTN->chr18:67671029-67873181:-,rotatin,SOHLH1->chr9:138585253-138591374:-,spermatogenesis_and_oogenesis_specific_basic_helix-loop-helix_1	IGROV1_OVARY	0.4	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000966
IGROV1_OVARY	SLC16A12--LIPA	1	1	SLC16A12	5062	chr10:91222136:-	LIPA	31894	chr10:90988155:-	ONLY_REF_SPLICE	YES	12	64	0.14	0.03	0.0117	0.0117	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	IGROV1_OVARY	0.03	0.14	0.0234	FALSE	1	4	0	2	0	FALSE	ACH-000966
IM95_STOMACH	AC104389.28--HBE1	62	84	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	74	3	0.66	0.98	0.707	0.9578	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	IM95_STOMACH	0.66	0.98	1.6648	TRUE	0	48	0	65	48	FALSE	ACH-000919
IM95_STOMACH	TIMM23B--LINC00843	66	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7526	0.2395	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	IM95_STOMACH	0.99	1	0.9921	TRUE	508	994	45	981	0	FALSE	ACH-000919
IM95_STOMACH	DHCR24--USP24	46	38	DHCR24	3863	chr1:55341615:-	USP24	40108	chr1:55598373:-	ONLY_REF_SPLICE	YES	563	113	0.13	0.43	0.5245	0.4333	DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-,USP24->Oncogene{Bushman},chr1:55532032-55680786:-,ubiquitin_specific_peptidase_24	IM95_STOMACH	0.13	0.43	0.9578	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	ZNF654--HMGB2	54	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6157	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	IM95_STOMACH	1	1	0.6157	TRUE	0	0	0	518	0	FALSE	ACH-000919
IM95_STOMACH	TIMM23--RP11-464F9.1	49	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	277	5	0.15	0.91	0.5587	0.0114	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	IM95_STOMACH	0.15	0.91	0.5701	TRUE	519	3926	326	965	0	FALSE	ACH-000919
IM95_STOMACH	THSD4--LRRC49	39	11	THSD4	2163	chr15:71433895:+	LRRC49	57770	chr15:71272440:+	ONLY_REF_SPLICE	YES	2	1	0.96	0.98	0.4447	0.1254	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:6],{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[46877],THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4,LRRC49->chr15:71145578-71342414:+,leucine_rich_repeat_containing_49	IM95_STOMACH	0.96	0.98	0.5701	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	AC104389.28--HBE1	20	85	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	74	0	0.59	1	0.2281	0.9692	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	IM95_STOMACH	0.59	1	1.1973	TRUE	0	35	0	55	35	FALSE	ACH-000919
IM95_STOMACH	MT-TA--MT-TC	26	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2965	0.0228	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IM95_STOMACH	1	1	0.3193	FALSE	462	80	0	856	0	FALSE	ACH-000919
IM95_STOMACH	OR51S1--TP53I11	25	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2851	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	IM95_STOMACH	1	1	0.2851	TRUE	402	216	10	229	0	FALSE	ACH-000919
IM95_STOMACH	NPM1P24--SET	14	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1596	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	IM95_STOMACH	1	1	0.1596	TRUE	0	0	0	434	0	FALSE	ACH-000919
IM95_STOMACH	PSD3--RP11-1080G15.1	12	5	PSD3	3423	chr8:18871073:-	RP11-1080G15.1	54304	chr8:18942588:-	ONLY_REF_SPLICE	YES	26	0	0.4	1	0.1368	0.057	GTEx_FI:{Salivary_Gland=[count:1=pct:2.6],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[262],PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,RP11-1080G15.1->chr8:18942502-19116979:-	IM95_STOMACH	0.4	1	0.1938	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	RP11-114H23.1--RP11-114H23.2	11	5	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1254	0.057	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	IM95_STOMACH	0.94	1	0.1824	FALSE	81	155	12	160	0	FALSE	ACH-000919
IM95_STOMACH	ITGA6--AC104088.1	7	13	ITGA6	6337	chr2:173335833:+	AC104088.1	28794	chr2:173188078:+	ONLY_REF_SPLICE	YES	331	1	0.06	0.95	0.0798	0.1482	ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6,AC104088.1->chr2:173180015-173188465:+	IM95_STOMACH	0.06	0.95	0.228	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	LGALS4--MT-ATP8	8	6	LGALS4	5424	chr19:39294386:-	MT-ATP8	10526	chrM:8392:+	INCL_NON_REF_SPLICE	YES	4606	0	0	1	0.0912	0.0684	LGALS4->chr19:39292311-39304004:-,lectin,_galactoside_binding_soluble_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IM95_STOMACH	0	1	0.1596	FALSE	0	0	0	3	0	FALSE	ACH-000919
IM95_STOMACH	C15orf57--CBX3	7	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	92	48	0.14	0.24	0.0798	0.0912	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	IM95_STOMACH	0.14	0.24	0.171	TRUE	267	562	48	632	0	FALSE	ACH-000919
IM95_STOMACH	DHCR24--USP24	3	24	DHCR24	2757	chr1:55349291:-	USP24	40108	chr1:55598373:-	ONLY_REF_SPLICE	YES	756	113	0.03	0.19	0.0342	0.2737	DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-,USP24->Oncogene{Bushman},chr1:55532032-55680786:-,ubiquitin_specific_peptidase_24	IM95_STOMACH	0.03	0.19	0.3079	TRUE	0	0	0	1	0	FALSE	ACH-000919
IM95_STOMACH	ITGA6--AC104088.1	6	11	ITGA6	5205	chr2:173334108:+	AC104088.1	28794	chr2:173188078:+	ONLY_REF_SPLICE	YES	183	1	0.09	0.94	0.0684	0.1254	ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6,AC104088.1->chr2:173180015-173188465:+	IM95_STOMACH	0.09	0.94	0.1938	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	MT-ND6--MT-TE	8	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0912	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IM95_STOMACH	1	1	0.0912	FALSE	499	1288	110	792	0	FALSE	ACH-000919
IM95_STOMACH	MT-ND6--MT-TE	8	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0912	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IM95_STOMACH	1	1	0.0912	FALSE	499	1288	110	792	0	FALSE	ACH-000919
IM95_STOMACH	NPM1P24--SET	8	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0912	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	IM95_STOMACH	1	1	0.0912	TRUE	0	0	0	434	0	FALSE	ACH-000919
IM95_STOMACH	EEF2--RPS28	7	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	4290	0	0	1	0.0798	0.0114	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	IM95_STOMACH	0	1	0.0912	FALSE	0	0	0	100	0	FALSE	ACH-000919
IM95_STOMACH	ITGA6--AC104088.1	5	8	ITGA6	3822	chr2:173332288:+	AC104088.1	28794	chr2:173188078:+	ONLY_REF_SPLICE	YES	266	1	0.05	0.93	0.057	0.0912	ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6,AC104088.1->chr2:173180015-173188465:+	IM95_STOMACH	0.05	0.93	0.1482	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	THSD4--LRRC49	4	7	THSD4	2163	chr15:71433895:+	LRRC49	58854	chr15:71276433:+	ONLY_REF_SPLICE	YES	2	3	0.85	0.79	0.0456	0.0798	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:6],{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[46877],THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4,LRRC49->chr15:71145578-71342414:+,leucine_rich_repeat_containing_49	IM95_STOMACH	0.79	0.85	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	MT-TA--MT-TC	5	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0.0228	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IM95_STOMACH	1	1	0.0798	FALSE	462	80	0	856	0	FALSE	ACH-000919
IM95_STOMACH	MT-ND6--MT-TE	4	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0.0114	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IM95_STOMACH	1	1	0.057	FALSE	499	1288	110	792	0	FALSE	ACH-000919
IM95_STOMACH	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.0342	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IM95_STOMACH	1	1	0.0684	FALSE	462	80	0	856	0	FALSE	ACH-000919
IM95_STOMACH	NRIP1--AF127936.7	3	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.38	1	0.0342	0.0342	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	IM95_STOMACH	0.38	1	0.0684	FALSE	164	806	69	479	0	FALSE	ACH-000919
IM95_STOMACH	ITGA6--AC104088.1	2	6	ITGA6	2742	chr2:173330391:+	AC104088.1	28794	chr2:173188078:+	ONLY_REF_SPLICE	YES	271	1	0.03	0.89	0.0228	0.0684	ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6,AC104088.1->chr2:173180015-173188465:+	IM95_STOMACH	0.03	0.89	0.0912	TRUE	0	0	0	1	0	FALSE	ACH-000919
IM95_STOMACH	MT-ND6--MT-TE	3	2	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.0228	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IM95_STOMACH	1	1	0.057	FALSE	499	1288	110	792	0	FALSE	ACH-000919
IM95_STOMACH	AC027119.1--AC026167.1	3	1	AC027119.1	1674	chr3:6005202:+	AC026167.1	6915	chr3:6400588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0.0114	NEIGHBORS[24364],AC027119.1->chr3:6004529-6165807:+,AC026167.1->chr3:6190171-6407572:+	IM95_STOMACH	1	1	0.0456	FALSE	1	37	1	9	0	FALSE	ACH-000919
IM95_STOMACH	MT-ND6--MT-TE	3	1	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.0114	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IM95_STOMACH	1	1	0.0456	FALSE	499	1288	110	792	0	FALSE	ACH-000919
IM95_STOMACH	MT-ND6--MT-TE	3	1	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.0114	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IM95_STOMACH	1	1	0.0456	FALSE	499	1288	110	792	0	FALSE	ACH-000919
IM95_STOMACH	MT-ND6--MT-TE	3	1	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.0114	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IM95_STOMACH	1	1	0.0456	FALSE	499	1288	110	792	0	FALSE	ACH-000919
IM95_STOMACH	PSD3--RP11-1080G15.1	2	5	PSD3	3423	chr8:18871073:-	RP11-1080G15.1	53277	chr8:18944431:-	ONLY_REF_SPLICE	YES	26	0	0.21	1	0.0228	0.057	GTEx_FI:{Salivary_Gland=[count:1=pct:2.6],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[262],PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,RP11-1080G15.1->chr8:18942502-19116979:-	IM95_STOMACH	0.21	1	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IM95_STOMACH	1	1	0.0342	FALSE	499	1288	110	792	0	FALSE	ACH-000919
IM95_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IM95_STOMACH	1	1	0.0342	FALSE	499	1288	110	792	0	FALSE	ACH-000919
IM95_STOMACH	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IM95_STOMACH	1	1	0.0342	FALSE	462	80	0	856	0	FALSE	ACH-000919
IM95_STOMACH	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	IM95_STOMACH	1	1	0.0342	FALSE	292	1546	117	613	0	FALSE	ACH-000919
IM95_STOMACH	RP11-120D5.1--MID1	2	4	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	8	26	0.43	0.19	0.0228	0.0456	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	IM95_STOMACH	0.19	0.43	0.0684	FALSE	0	48	1	163	0	FALSE	ACH-000919
IM95_STOMACH	TMLHE--CLIC2	3	0	TMLHE	2332	chrX:154842453:-	CLIC2	18105	chrX:154528458:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,CLIC2->chloride_intracellular_channel_2,chrX:154505500-154563966:-	IM95_STOMACH	1	1	0.0342	TRUE	5	6	1	7	0	FALSE	ACH-000919
IM95_STOMACH	FAM208B--GDI2	2	2	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	25	903	0.14	0	0.0228	0.0228	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	IM95_STOMACH	0	0.14	0.0456	FALSE	0	6	0	16	3	FALSE	ACH-000919
IM95_STOMACH	THSD4--LRRC49	2	2	THSD4	2163	chr15:71433895:+	LRRC49	60313	chr15:71300718:+	ONLY_REF_SPLICE	YES	2	50	0.67	0.07	0.0228	0.0228	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:6],{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[46877],THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4,LRRC49->chr15:71145578-71342414:+,leucine_rich_repeat_containing_49	IM95_STOMACH	0.07	0.67	0.0456	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	LINC00477--RP11-444D3.1	2	1	LINC00477	2213	chr12:24735890:-	RP11-444D3.1	10607	chr12:24560500:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0.0114	NEIGHBORS[4374],LINC00477->chr12:24719898-24737102:-,long_intergenic_non-protein_coding_RNA_477,RP11-444D3.1->chr12:24366190-24715524:-	IM95_STOMACH	1	1	0.0342	FALSE	0	0	0	3	0	FALSE	ACH-000919
IM95_STOMACH	RP11-120D5.1--MID1	1	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	26	0.6	0.19	0.0114	0.057	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	IM95_STOMACH	0.19	0.6	0.0684	FALSE	16	356	14	466	0	FALSE	ACH-000919
IM95_STOMACH	RPS3--MKI67	2	1	RPS3	2292	chr11:75111821:+	MKI67	16082	chr10:129917583:-	ONLY_REF_SPLICE	YES	4586	160	0	0.02	0.0228	0.0114	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	IM95_STOMACH	0	0.02	0.0342	FALSE	0	0	0	4	0	FALSE	ACH-000919
IM95_STOMACH	VTI1A--RP11-57H14.3	2	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	38	0	0.07	1	0.0228	0.0114	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	IM95_STOMACH	0.07	1	0.0342	FALSE	272	151	14	158	0	FALSE	ACH-000919
IM95_STOMACH	C17orf76-AS1--SUPT3H	2	0	C17orf76-AS1	1593	chr17:16342728:+	SUPT3H	14846	chr6:45333038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	C17orf76-AS1->chr17:16342136-16381992:+,SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-	IM95_STOMACH	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	CDC42SE2--CTD-2410N18.5	2	0	CDC42SE2	5200	chr5:130599859:+	CTD-2410N18.5	21445	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,CTD-2410N18.5->chr5:133502861-133561762:-	IM95_STOMACH	1	1	0.0228	TRUE	0	1	0	3	1	TRUE	ACH-000919
IM95_STOMACH	COL4A5--RBM41	2	0	COL4A5	1363	chrX:107683436:+	RBM41	63421	chrX:106312632:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	COL4A5->chrX:107683074-107940775:+,collagen_type_IV_alpha_5,RBM41->RNA_binding_motif_protein_41,chrX:106307650-106362057:-	IM95_STOMACH	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	GLB1--UBP1	2	0	GLB1	1220	chr3:33138503:-	UBP1	30975	chr3:33467233:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GLB1->Oncogene{Bushman},chr3:33038100-33138722:-,galactosidase_beta_1,UBP1->chr3:33429828-33482863:-,upstream_binding_protein_1_(LBP-1a)	IM95_STOMACH	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	HIAT1--ZMYND11	2	0	HIAT1	1220	chr1:100503872:+	ZMYND11	19320	chr10:225934:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	HIAT1->chr1:100503653-100548933:+,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	IM95_STOMACH	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	IM95_STOMACH	1	1	0.0228	TRUE	3	14	2	43	0	FALSE	ACH-000919
IM95_STOMACH	MTX2--COL28A1	2	0	MTX2	1275	chr2:177134397:+	COL28A1	32080	chr7:7495743:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	MTX2->chr2:177134123-177202753:+,metaxin_2,COL28A1->Oncogene{Bushman},chr7:7395834-7575484:-,collagen_type_XXVIII_alpha_1	IM95_STOMACH	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	IM95_STOMACH	1	1	0.0228	FALSE	125	705	46	456	0	FALSE	ACH-000919
IM95_STOMACH	OTUB1--COX8A	2	0	OTUB1	3602	chr11:63756224:+	COX8A	14254	chr11:63743697:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[9310],OTUB1->OTU_deubiquitinase,_ubiquitin_aldehyde_binding_1,chr11:63753325-63769283:+,COX8A->chr11:63742079-63744015:+,cytochrome_c_oxidase_subunit_8A	IM95_STOMACH	1	1	0.0228	TRUE	0	1	0	4	1	TRUE	ACH-000919
IM95_STOMACH	UVRAG--RNF169	2	0	UVRAG	7929	chr11:75599947:+	RNF169	36229	chr11:74545721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,RNF169->chr11:74459913-74553458:+,ring_finger_protein_169	IM95_STOMACH	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000919
IM95_STOMACH	RP11-114H23.1--RP11-114H23.2	1	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	NO	1	1	0.8	0.8	0.0114	0.0342	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	IM95_STOMACH	0.8	0.8	0.0456	FALSE	81	155	12	160	0	FALSE	ACH-000919
IM95_STOMACH	RP11-15B17.1--AGR2	1	2	RP11-15B17.1	1675	chr4:100871837:+	AGR2	16648	chr7:16841427:-	ONLY_REF_SPLICE	YES	0	175	1	0.02	0.0114	0.0228	RP11-15B17.1->chr4:100871163-101116256:+,AGR2->anterior_gradient_2,_protein_disulphide_isomerase_family_member,chr7:16831435-16873057:-	IM95_STOMACH	0.02	1	0.0342	TRUE	0	0	0	1	0	FALSE	ACH-000919
IM95_STOMACH	ACN9--SHFM1	1	1	ACN9	2308	chr7:96747209:+	SHFM1	15230	chr7:96324203:-	ONLY_REF_SPLICE	YES	1244	1235	0	0	0.0114	0.0114	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ACN9->chr7:96745902-96811075:+,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	IM95_STOMACH	0	0	0.0228	FALSE	0	0	0	3	0	FALSE	ACH-000919
IM95_STOMACH	C17orf76-AS1--PHF14	1	1	C17orf76-AS1	1593	chr17:16342728:+	PHF14	37718	chr7:11150977:+	ONLY_REF_SPLICE	NO	248	123	0.01	0.02	0.0114	0.0114	C17orf76-AS1->chr17:16342136-16381992:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	IM95_STOMACH	0.01	0.02	0.0228	FALSE	0	0	0	5	0	FALSE	ACH-000919
IM95_STOMACH	COX15--PFKP	1	1	COX15	8623	chr10:101476105:-	PFKP	37344	chr10:3172011:+	ONLY_REF_SPLICE	YES	103	494	0.02	0	0.0114	0.0114	COX15->COX15_cytochrome_c_oxidase_assembly_homolog,chr10:101471601-101491857:-,PFKP->chr10:3108525-3179904:+,phosphofructokinase,_platelet	IM95_STOMACH	0	0.02	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000919
IM95_STOMACH	DNAJC2--PSMC2	1	1	DNAJC2	1315	chr7:102985006:-	PSMC2	24643	chr7:102995315:+	ONLY_REF_SPLICE	YES	288	815	0.01	0	0.0114	0.0114	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},NEIGHBORS_OVERLAP:-:+:[619],DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-,PSMC2->chr7:102984701-103009842:+,proteasome_26S_subunit,_ATPase_2	IM95_STOMACH	0	0.01	0.0228	FALSE	0	1	0	3	0	FALSE	ACH-000919
IM95_STOMACH	DTL--PPP2R5A	1	1	DTL	1366	chr1:212209284:+	PPP2R5A	28627	chr1:212502477:+	ONLY_REF_SPLICE	YES	119	163	0.02	0.01	0.0114	0.0114	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	IM95_STOMACH	0.01	0.02	0.0228	FALSE	0	0	0	3	0	FALSE	ACH-000919
IM95_STOMACH	EZH2--TRIM24	1	1	EZH2	1158	chr7:148581256:-	TRIM24	26608	chr7:138189035:+	ONLY_REF_SPLICE	YES	175	184	0.01	0.01	0.0114	0.0114	EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit,TRIM24->Oncogene{Bushman},chr7:138145079-138274738:+,tripartite_motif_containing_24	IM95_STOMACH	0.01	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000919
IM95_STOMACH	HOXC10--GNAS	1	1	HOXC10	1946	chr12:54379794:+	GNAS	23570	chr20:57470667:+	ONLY_REF_SPLICE	NO	98	544	0.02	0	0.0114	0.0114	HOXC10->chr12:54378849-54384063:+,homeobox_C10,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	IM95_STOMACH	0	0.02	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000919
IM95_STOMACH	LINC00477--RP11-444D3.1	1	1	LINC00477	2213	chr12:24735890:-	RP11-444D3.1	11689	chr12:24521573:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0114	0.0114	NEIGHBORS[4374],LINC00477->chr12:24719898-24737102:-,long_intergenic_non-protein_coding_RNA_477,RP11-444D3.1->chr12:24366190-24715524:-	IM95_STOMACH	0.67	1	0.0228	FALSE	0	0	0	2	0	FALSE	ACH-000919
IM95_STOMACH	LMNB2--KRT19	1	1	LMNB2	3833	chr19:2438161:-	KRT19	19038	chr17:39680792:-	ONLY_REF_SPLICE	YES	375	3758	0.01	0	0.0114	0.0114	LMNB2->chr19:2427636-2456994:-,lamin_B2,KRT19->chr17:39679869-39684560:-,keratin_19	IM95_STOMACH	0	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000919
IM95_STOMACH	LYPLAL1--RRP15	1	1	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	YES	194	131	0.01	0.02	0.0114	0.0114	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	IM95_STOMACH	0.01	0.02	0.0228	FALSE	0	12	0	13	2	FALSE	ACH-000919
IM95_STOMACH	PPP2R5C--RPN2	1	1	PPP2R5C	10176	chr14:102276373:+	RPN2	60165	chr20:35862423:+	ONLY_REF_SPLICE	YES	407	781	0	0	0.0114	0.0114	PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma,RPN2->chr20:35806813-35870022:+,ribophorin_II	IM95_STOMACH	0	0	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000919
IM95_STOMACH	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	31	1	0.06	0.0114	0.0114	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	IM95_STOMACH	0.06	1	0.0228	TRUE	465	1949	224	605	0	FALSE	ACH-000919
IM95_STOMACH	SNHG5--RNF149	1	1	SNHG5	1780	chr6:86387672:-	RNF149	20975	chr2:101888206:-	ONLY_REF_SPLICE	YES	1930	48	0	0.04	0.0114	0.0114	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	IM95_STOMACH	0	0.04	0.0228	FALSE	0	0	0	2	0	FALSE	ACH-000919
JL1_PLEURA	TFG--GPR128	109	68	TFG	5019	chr3:100438902:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	251	0	0.41	1	1.573	0.9814	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	JL1_PLEURA	0.41	1	2.5544	TRUE	12	123	7	17	0	FALSE	ACH-000645
JL1_PLEURA	HSPBP1--ZSWIM6	67	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9669	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	JL1_PLEURA	1	1	0.9669	TRUE	47	32	1	28	0	FALSE	ACH-000645
JL1_PLEURA	BCAR3--RP11-488P3.1	47	29	BCAR3	11906	chr1:94107860:-	RP11-488P3.1	30475	chr1:94219902:-	ONLY_REF_SPLICE	YES	39	0	0.66	1	0.6783	0.4185	NEIGHBORS_OVERLAP:-:-:[22520],BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,RP11-488P3.1->chr1:94218480-94241000:-	JL1_PLEURA	0.66	1	1.0968	FALSE	0	0	0	3	0	FALSE	ACH-000645
JL1_PLEURA	GLYCTK--CCR3	44	24	GLYCTK	3826	chr3:52325127:+	CCR3	13469	chr3:46283893:+	ONLY_REF_SPLICE	YES	3	0	0.96	1	0.635	0.3464	GLYCTK->chr3:52321105-52329272:+,glycerate_kinase,CCR3->C-C_motif_chemokine_receptor_3,chr3:46205096-46308197:+	JL1_PLEURA	0.96	1	0.9814	TRUE	0	0	0	1	0	TRUE	ACH-000645
JL1_PLEURA	COL1A1--COL6A1	45	0	COL1A1	6491	chr17:48273284:-	COL6A1	32210	chr21:47414081:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.6494	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	JL1_PLEURA	1	1	0.6494	TRUE	0	1	0	5	0	TRUE	ACH-000645
JL1_PLEURA	TIMM23B--LINC00843	42	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6061	0.1732	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JL1_PLEURA	1	1	0.7793	TRUE	508	994	45	981	0	FALSE	ACH-000645
JL1_PLEURA	MT-TA--MT-TC	29	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4185	0.0289	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JL1_PLEURA	1	1	0.4474	FALSE	462	80	0	856	0	FALSE	ACH-000645
JL1_PLEURA	RP11-680G10.1--GSE1	23	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	13	1	0.69	0.3319	0.0866	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JL1_PLEURA	0.69	1	0.4185	TRUE	458	1351	185	561	0	FALSE	ACH-000645
JL1_PLEURA	ZNF654--HMGB2	20	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2886	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JL1_PLEURA	1	1	0.2886	TRUE	0	0	0	518	0	FALSE	ACH-000645
JL1_PLEURA	MT-ND6--MT-TE	19	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2742	0.0144	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JL1_PLEURA	1	1	0.2886	FALSE	499	1288	110	792	0	FALSE	ACH-000645
JL1_PLEURA	TIMM23--RP11-464F9.1	19	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	120	1	0.14	0.95	0.2742	0.0144	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JL1_PLEURA	0.14	0.95	0.2886	TRUE	519	3926	326	965	0	FALSE	ACH-000645
JL1_PLEURA	RP11-680G10.1--GSE1	14	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	57	1	0.24	0.202	0.0577	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JL1_PLEURA	0.24	1	0.2597	TRUE	465	1949	224	605	0	FALSE	ACH-000645
JL1_PLEURA	KANSL1--ARL17B	13	7	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	19	15	0.51	0.57	0.1876	0.101	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	JL1_PLEURA	0.51	0.57	0.2886	TRUE	181	1564	124	196	0	FALSE	ACH-000645
JL1_PLEURA	RP11-123O10.4--GRIP1	11	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1587	0.0722	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JL1_PLEURA	1	1	0.2309	FALSE	416	2512	207	587	0	FALSE	ACH-000645
JL1_PLEURA	SERPINE1--MT-ND4	7	2	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	7602	11923	0	0	0.101	0.0289	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	JL1_PLEURA	0	0	0.1299	FALSE	1	0	0	29	0	FALSE	ACH-000645
JL1_PLEURA	NPM1P24--SET	7	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.101	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JL1_PLEURA	1	1	0.101	TRUE	0	0	0	434	0	FALSE	ACH-000645
JL1_PLEURA	BCAR3--RP11-488P3.1	1	21	BCAR3	8673	chr1:94140170:-	RP11-488P3.1	30475	chr1:94219902:-	ONLY_REF_SPLICE	YES	33	0	0.4	1	0.0144	0.3031	NEIGHBORS_OVERLAP:-:-:[22520],BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,RP11-488P3.1->chr1:94218480-94241000:-	JL1_PLEURA	0.4	1	0.3175	FALSE	0	0	0	3	0	FALSE	ACH-000645
JL1_PLEURA	FAM102B--GLMN	6	1	FAM102B	1477	chr1:109103187:+	GLMN	37213	chr1:92712701:-	ONLY_REF_SPLICE	YES	0	2	1	0.78	0.0866	0.0144	FAM102B->chr1:109102711-109187522:+,family_with_sequence_similarity_102_member_B,GLMN->Oncogene{Bushman},chr1:92711959-92764544:-,glomulin,_FKBP_associated_protein	JL1_PLEURA	0.78	1	0.101	TRUE	0	0	0	1	0	TRUE	ACH-000645
JL1_PLEURA	MT-ND6--MT-TE	5	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0.0433	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JL1_PLEURA	1	1	0.1155	FALSE	499	1288	110	792	0	FALSE	ACH-000645
JL1_PLEURA	GLYCTK--CCR3	2	11	GLYCTK	3826	chr3:52325127:+	CCR3	17443	chr3:46306639:+	ONLY_REF_SPLICE	YES	3	1	0.81	0.93	0.0289	0.1587	GLYCTK->chr3:52321105-52329272:+,glycerate_kinase,CCR3->C-C_motif_chemokine_receptor_3,chr3:46205096-46308197:+	JL1_PLEURA	0.81	0.93	0.1876	TRUE	0	0	0	1	0	TRUE	ACH-000645
JL1_PLEURA	NRIP1--AF127936.7	4	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0577	0.0433	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JL1_PLEURA	0.88	1	0.101	FALSE	292	1546	117	613	0	FALSE	ACH-000645
JL1_PLEURA	MT-TA--MT-TC	4	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0577	0.0289	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JL1_PLEURA	1	1	0.0866	FALSE	462	80	0	856	0	FALSE	ACH-000645
JL1_PLEURA	MT-ND6--MT-TE	3	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0.0722	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JL1_PLEURA	1	1	0.1155	FALSE	499	1288	110	792	0	FALSE	ACH-000645
JL1_PLEURA	MT-ND6--MT-TE	4	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0577	0.0144	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JL1_PLEURA	1	1	0.0721	FALSE	499	1288	110	792	0	FALSE	ACH-000645
JL1_PLEURA	MT-TA--MT-TC	4	1	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0577	0.0144	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JL1_PLEURA	1	1	0.0721	FALSE	462	80	0	856	0	FALSE	ACH-000645
JL1_PLEURA	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0.0289	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JL1_PLEURA	1	1	0.0722	FALSE	462	80	0	856	0	FALSE	ACH-000645
JL1_PLEURA	MT-ND6--MT-ND5	3	1	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	1880	1	0	0.0433	0.0144	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	JL1_PLEURA	0	1	0.0577	FALSE	101	855	57	72	0	FALSE	ACH-000645
JL1_PLEURA	PPP1R12C--CNN2	3	0	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0433	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	JL1_PLEURA	1	1	0.0433	TRUE	35	34	3	30	0	FALSE	ACH-000645
JL1_PLEURA	LINC01014--KCNMB2	2	0	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	JL1_PLEURA	1	1	0.0289	FALSE	11	60	26	37	0	FALSE	ACH-000645
JL1_PLEURA	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JL1_PLEURA	1	1	0.0289	FALSE	515	4851	409	746	0	FALSE	ACH-000645
JL1_PLEURA	SPARC--ATOX1	2	0	SPARC	6913	chr5:151052690:-	ATOX1	24310	chr5:151126010:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_REARRANGEMENT:-:[55151],SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,ATOX1->antioxidant_1_copper_chaperone,chr5:151121877-151152093:-	JL1_PLEURA	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000645
JL1_PLEURA	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0144	0.0433	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JL1_PLEURA	1	1	0.0577	FALSE	93	270	15	244	0	FALSE	ACH-000645
JL1_PLEURA	CRIM1--FEZ2	1	1	CRIM1	11742	chr2:36706837:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	1304	162	0	0.01	0.0144	0.0144	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	JL1_PLEURA	0	0.01	0.0288	FALSE	0	0	0	2	0	FALSE	ACH-000645
JL1_PLEURA	CRIM1--FEZ2	1	1	CRIM1	16425	chr2:36740908:+	FEZ2	38223	chr2:36806008:-	ONLY_REF_SPLICE	NO	952	127	0	0.02	0.0144	0.0144	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	JL1_PLEURA	0	0.02	0.0288	FALSE	0	0	0	1	0	FALSE	ACH-000645
JL1_PLEURA	FAM102B--GLMN	1	1	FAM102B	1477	chr1:109103187:+	GLMN	36368	chr1:92713546:-	ONLY_REF_SPLICE	YES	0	4	1	0.33	0.0144	0.0144	FAM102B->chr1:109102711-109187522:+,family_with_sequence_similarity_102_member_B,GLMN->Oncogene{Bushman},chr1:92711959-92764544:-,glomulin,_FKBP_associated_protein	JL1_PLEURA	0.33	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000645
JL1_PLEURA	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0144	0.0144	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JL1_PLEURA	1	1	0.0288	FALSE	407	2205	196	549	0	FALSE	ACH-000645
JL1_PLEURA	SACM1L--FAM19A1	1	1	SACM1L	20516	chr3:45781136:+	FAM19A1	32789	chr3:68466430:+	ONLY_REF_SPLICE	YES	37	0	0.05	1	0.0144	0.0144	{Klijn_CCL:Other=1},SACM1L->SAC1_suppressor_of_actin_mutations_1-like_(yeast),chr3:45730548-45786916:+,FAM19A1->chr3:68053359-68594776:+,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A1	JL1_PLEURA	0.05	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000645
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MBNL1--RAF1	145	269	MBNL1	15134	chr3:152164546:+	RAF1	32194	chr3:12650422:-	ONLY_REF_SPLICE	YES	161	129	0.72	0.76	1.5764	2.9244	{Klijn_CCL:Lymphoid=1},MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,RAF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},Raf-1_proto-oncogene,_serine/threonine_kinase,chr3:12625100-12705725:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	0.76	4.5008	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	142	82	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	40	29	0.85	0.89	1.5437	0.8915	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.89	2.4352	TRUE	181	1564	124	196	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MBNL1--RAF1	103	204	MBNL1	14080	chr3:152163328:+	RAF1	32194	chr3:12650422:-	ONLY_REF_SPLICE	YES	164	129	0.65	0.7	1.1198	2.2178	{Klijn_CCL:Lymphoid=1},MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,RAF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},Raf-1_proto-oncogene,_serine/threonine_kinase,chr3:12625100-12705725:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.7	3.3376	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAC2--PCNX	128	72	UBAC2	5795	chr13:99896878:+	PCNX	56780	chr14:71540262:+	ONLY_REF_SPLICE	YES	124	40	0.62	0.83	1.3915	0.7827	UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,PCNX->chr14:71374122-71582099:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.83	2.1742	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT4	82	53	KMT2A	16644	chr11:118353210:+	MLLT4	53803	chr6:168265231:+	ONLY_REF_SPLICE	YES	23	0	0.85	1	0.8915	0.5762	Cosmic{samples=29,mutations=27,papers=26},Mitelman{Skin=2,ALL=2,AML=12},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT4->Oncogene{Bushman},chr6:168227602-168372703:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_4	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	1.4677	TRUE	0	1	0	1	1	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUDT3--RP11-404F10.2	64	31	NUDT3	1411	chr6:34360041:-	RP11-404F10.2	22416	chr1:160648733:+	ONLY_REF_SPLICE	YES	103	0	0.48	1	0.6958	0.337	NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3,RP11-404F10.2->chr1:160640568-160653698:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	1.0328	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	54	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5871	0.2609	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.848	TRUE	508	994	45	981	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCNX--UBAC2	47	36	PCNX	34724	chr14:71524441:+	UBAC2	67137	chr13:99966351:+	ONLY_REF_SPLICE	YES	36	123	0.7	0.4	0.511	0.3914	PCNX->chr14:71374122-71582099:+,UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.7	0.9024	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GIGYF2--RUVBL1	37	20	GIGYF2	4148	chr2:233568199:+	RUVBL1	74859	chr3:127784063:-	ONLY_REF_SPLICE	YES	39	1	0.59	0.98	0.4022	0.2174	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	0.98	0.6196	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	26	27	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	107	46	0.33	0.54	0.2827	0.2935	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.54	0.5762	TRUE	267	562	48	632	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	30	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	163	12	0.17	0.73	0.3261	0.0326	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.73	0.3587	TRUE	519	3926	326	965	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	30	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3261	0.0217	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3478	FALSE	462	80	0	856	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-763B22.4--SEC22B	21	13	RP11-763B22.4	1056	chr1:148760559:+	SEC22B	9372	chr1:145109524:+	ONLY_REF_SPLICE	YES	1	213	0.97	0.14	0.2283	0.1413	GTEx_FI:{Brain=[count:9=pct:1.4],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},RP11-763B22.4->chr1:148760504-148761583:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.97	0.3696	TRUE	11	9	1	4	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUDT3--RP11-404F10.2	13	31	NUDT3	1411	chr6:34360041:-	RP11-404F10.2	22419	chr1:160648736:+	INCL_NON_REF_SPLICE	YES	103	1	0.3	0.98	0.1413	0.337	NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3,RP11-404F10.2->chr1:160640568-160653698:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.98	0.4783	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	19	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2066	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2066	TRUE	0	0	0	518	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--MLLT4	13	22	KMT2A	16241	chr11:118352807:+	MLLT4	53803	chr6:168265231:+	ONLY_REF_SPLICE	YES	16	0	0.69	1	0.1413	0.2392	Cosmic{samples=29,mutations=27,papers=26},Mitelman{Skin=2,ALL=2,AML=12},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,MLLT4->Oncogene{Bushman},chr6:168227602-168372703:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_4	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	0.3805	TRUE	0	1	0	1	1	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GIGYF2--RUVBL1	8	29	GIGYF2	4148	chr2:233568199:+	RUVBL1	73581	chr3:127787756:-	ONLY_REF_SPLICE	YES	39	0	0.49	1	0.087	0.3153	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	1	0.4023	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	10	19	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	104	50	0.22	0.37	0.1087	0.2066	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.37	0.3153	TRUE	267	562	48	632	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHEK2--TTC28	12	0	CHEK2	1654	chr22:29137757:-	TTC28	31045	chr22:28702631:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1305	0	NEIGHBORS[7878],CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1305	FALSE	0	0	0	1	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCNX--UBAC2	1	39	PCNX	34724	chr14:71524441:+	UBAC2	64696	chr13:99960937:+	ONLY_REF_SPLICE	NO	36	146	0.53	0.22	0.0109	0.424	PCNX->chr14:71374122-71582099:+,UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.53	0.4349	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GIGYF2--RUVBL1	3	25	GIGYF2	4148	chr2:233568199:+	RUVBL1	73685	chr3:127787652:-	INCL_NON_REF_SPLICE	YES	39	5	0.42	0.85	0.0326	0.2718	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.85	0.3044	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.087	0.0326	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.1196	FALSE	499	1288	110	792	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAC2--PCNX	3	22	UBAC2	4002	chr13:99890808:+	PCNX	56780	chr14:71540262:+	ONLY_REF_SPLICE	YES	196	40	0.11	0.38	0.0326	0.2392	UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,PCNX->chr14:71374122-71582099:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.38	0.2718	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.087	0.0109	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0979	FALSE	499	1288	110	792	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	6902	15444	0	0	0.0652	0.0217	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0869	FALSE	183	104	9	328	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0652	0.0109	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0761	FALSE	499	1288	110	792	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0435	0.0652	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1087	FALSE	515	4851	409	746	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-255H23.4--ERP29	4	1	RP11-255H23.4	2235	chr19:24009900:-	ERP29	9430	chr12:112451258:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.5	0.0435	0.0109	RP11-255H23.4->chr19:24000401-24057503:-,ERP29->chr12:112451120-112461255:+,endoplasmic_reticulum_protein_29	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	4	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0435	0.0109	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0544	TRUE	477	1352	189	275	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--UBAP2	4	0	RCC1	2175	chr1:28834672:+	UBAP2	36712	chr9:33948585:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0435	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00477--RP11-444D3.1	3	3	LINC00477	3337	chr12:24724468:-	RP11-444D3.1	10607	chr12:24560500:-	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0326	0.0326	NEIGHBORS[4374],LINC00477->chr12:24719898-24737102:-,long_intergenic_non-protein_coding_RNA_477,RP11-444D3.1->chr12:24366190-24715524:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0652	FALSE	0	0	0	2	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0.0326	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0652	FALSE	499	1288	110	792	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0217	0.0761	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.0978	FALSE	467	2173	244	435	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	YES	2916	13738	0	0	0.0326	0.0217	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0543	FALSE	183	104	9	328	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	5543	15189	0	0	0.0326	0.0109	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0435	FALSE	183	104	9	328	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0.0109	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0435	FALSE	462	80	0	856	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUDT3--RP11-404F10.2	1	9	NUDT3	1411	chr6:34360041:-	RP11-404F10.2	23529	chr1:160653389:+	ONLY_REF_SPLICE	YES	103	11	0.09	0.48	0.0109	0.0978	NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3,RP11-404F10.2->chr1:160640568-160653698:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.48	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0326	FALSE	292	1546	117	613	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGFR2--COL14A1	2	1	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0217	0.0109	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0326	TRUE	0	0	0	32	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABI1--YME1L1	2	0	ABI1	3560	chr10:27112067:-	YME1L1	37580	chr10:27409476:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,YME1L1->YME1_like_1_ATPase,chr10:27399383-27444195:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--RHOA	2	0	C17orf76-AS1	1593	chr17:16342728:+	RHOA	16477	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	C17orf76-AS1->chr17:16342136-16381992:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	4	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX60L--PITPNC1	2	0	DDX60L	13565	chr4:169392898:-	PITPNC1	69838	chr17:65628259:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	DDX60L->DEAD-box_helicase_60-like,chr4:169277886-169458937:-,PITPNC1->chr17:65373575-65693372:+,phosphatidylinositol_transfer_protein,_cytoplasmic_1	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGD4--XPO6	2	0	FGD4	9074	chr12:32717223:+	XPO6	51826	chr16:28164106:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,XPO6->chr16:28109300-28223241:-,exportin_6	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPCPD1--YWHAB	2	0	GPCPD1	1185	chr20:5591488:-	YWHAB	31636	chr20:43530172:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GPCPD1->chr20:5525085-5591672:-,glycerophosphocholine_phosphodiesterase_1,YWHAB->chr20:43514317-43537173:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_beta	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	2	0	KANSL1	2697	chr17:44301037:-	ARL17B	44367	chr17:44352784:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	2	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLHL9--KBTBD2	2	0	KLHL9	1284	chr9:21335096:-	KBTBD2	13765	chr7:32919554:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	HGNC_GENEFAM,PROTCLUST,KLHL9->chr9:21329670-21335379:-,kelch_like_family_member_9,KBTBD2->chr7:32907784-32933743:-,kelch_repeat_and_BTB_domain_containing_2	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00926--DHRS9	2	0	LINC00926	1560	chr15:57593122:+	DHRS9	18398	chr2:169939839:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	LINC00926->chr15:57592563-57599959:+,long_intergenic_non-protein_coding_RNA_926,DHRS9->chr2:169921299-169952677:+,dehydrogenase/reductase_(SDR_family)_member_9	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGAT1--RNF130	2	0	MGAT1	5998	chr5:180230602:-	RNF130	16611	chr5:179467647:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	MGAT1->chr5:180217541-180242652:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,2-N-acetylglucosaminyltransferase,RNF130->chr5:179338651-179499118:-,ring_finger_protein_130	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NAA40--RNF214	2	0	NAA40	2672	chr11:63713407:+	RNF214	16258	chr11:117110517:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	NAA40->N(alpha)-acetyltransferase_40,_NatD_catalytic_subunit,chr11:63706431-63724800:+,RNF214->chr11:117103341-117157161:+,ring_finger_protein_214	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIKFYVE--LYST	2	0	PIKFYVE	13574	chr2:209169737:+	LYST	107036	chr1:235875497:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	PIKFYVE->chr2:209130991-209223475:+,phosphoinositide_kinase,_FYVE-type_zinc_finger_containing,LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRR16--CTD-2334D19.1	2	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	FALSE	56	216	12	147	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPN23--SMARCC1	2	0	PTPN23	1170	chr3:47422670:+	SMARCC1	16614	chr3:47814426:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23,SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	2	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC35F2--MRPL33	2	0	SLC35F2	12088	chr11:107673727:-	MRPL33	21145	chr2:28002300:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	SLC35F2->chr11:107661717-107799019:-,solute_carrier_family_35_member_F2,MRPL33->chr2:27994584-28210954:+,mitochondrial_ribosomal_protein_L33	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBC1D5--ATG3	2	0	TBC1D5	38765	chr3:17299998:-	ATG3	57962	chr3:112269109:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-,ATG3->autophagy_related_3,chr3:112251356-112280893:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNFAIP8--AP3S1	2	0	TNFAIP8	6599	chr5:118691816:+	AP3S1	21733	chr5:115202367:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XPO6--PRIMPOL	2	0	XPO6	12211	chr16:28167267:-	PRIMPOL	46906	chr4:185603402:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	XPO6->chr16:28109300-28223241:-,exportin_6,PRIMPOL->chr4:185570767-185616117:+,primase_and_DNA_directed_polymerase	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00477--RP11-444D3.1	1	3	LINC00477	2213	chr12:24735890:-	RP11-444D3.1	10607	chr12:24560500:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0109	0.0326	NEIGHBORS[4374],LINC00477->chr12:24719898-24737102:-,long_intergenic_non-protein_coding_RNA_477,RP11-444D3.1->chr12:24366190-24715524:-	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.0435	FALSE	0	0	0	3	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MANBA--UBE2D3	1	2	MANBA	9780	chr4:103610731:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	YES	129	451	0.02	0.01	0.0109	0.0217	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0326	FALSE	6	5	0	8	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MANBA--UBE2D3	1	2	MANBA	5774	chr4:103644028:-	UBE2D3	38146	chr4:103723795:-	ONLY_REF_SPLICE	YES	130	803	0.02	0	0.0109	0.0217	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0326	FALSE	0	0	0	1	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LDLRAD3--PRR5L	1	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	20830	chr11:36350668:+	ONLY_REF_SPLICE	YES	38	1	0.05	0.67	0.0109	0.0109	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.67	0.0218	FALSE	2	24	3	12	0	FALSE	ACH-000113
OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--TUBGCP6	1	1	PROSC	2996	chr8:37623873:+	TUBGCP6	26031	chr22:50658444:-	ONLY_REF_SPLICE	YES	194	77	0.01	0.03	0.0109	0.0109	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6	OCIAML2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0218	FALSE	2	2	1	4	0	FALSE	ACH-000113
NCIH1436_LUNG	RP11-123O10.4--GRIP1	92	37	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	1.2711	0.5112	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1436_LUNG	0.99	1	1.7823	FALSE	416	2512	207	587	0	FALSE	ACH-000830
NCIH1436_LUNG	TIMM23B--LINC00843	75	41	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0362	0.5665	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1436_LUNG	1	1	1.6027	TRUE	508	994	45	981	0	FALSE	ACH-000830
NCIH1436_LUNG	OR51S1--TP53I11	77	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0638	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH1436_LUNG	1	1	1.0638	TRUE	402	216	10	229	0	FALSE	ACH-000830
NCIH1436_LUNG	TIMM23--RP11-464F9.1	38	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	226	3	0.15	0.93	0.525	0.0276	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1436_LUNG	0.15	0.93	0.5526	TRUE	519	3926	326	965	0	FALSE	ACH-000830
NCIH1436_LUNG	LINC01014--KCNMB2	32	3	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	9	88	0.8	0.28	0.4421	0.0414	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH1436_LUNG	0.28	0.8	0.4835	FALSE	11	60	26	37	0	FALSE	ACH-000830
NCIH1436_LUNG	RP4-565E6.1--HYDIN	28	13	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	3	1	0.93	0.3869	0.1796	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1436_LUNG	0.93	1	0.5665	TRUE	456	1387	91	133	0	FALSE	ACH-000830
NCIH1436_LUNG	LMO7--MPRIP	18	11	LMO7	10788	chr13:76335174:+	MPRIP	93391	chr17:17104772:+	ONLY_REF_SPLICE	YES	64	0	0.31	1	0.2487	0.152	LMO7->LIM_domain_7,Oncogene{Bushman},chr13:76194570-76434004:+,MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein	NCIH1436_LUNG	0.31	1	0.4007	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	LINC00693--RP11-349A22.5	16	10	LINC00693	5957	chr3:28799344:+	RP11-349A22.5	24732	chr14:58732262:-	INCL_NON_REF_SPLICE	YES	0	19	1	0.58	0.2211	0.1382	LINC00693->chr3:28616282-28799831:+,long_intergenic_non-protein_coding_RNA_693,RP11-349A22.5->chr14:58732083-58764852:-	NCIH1436_LUNG	0.58	1	0.3593	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	LINC01014--KCNMB2	17	5	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	9	87	0.71	0.2	0.2349	0.0691	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH1436_LUNG	0.2	0.71	0.304	FALSE	12	33	18	33	0	FALSE	ACH-000830
NCIH1436_LUNG	PPARGC1A--POLN	15	5	PPARGC1A	4638	chr4:23886375:-	POLN	38179	chr4:2214853:-	ONLY_REF_SPLICE	YES	7	0	0.74	1	0.2072	0.0691	PPARGC1A->PPARG_coactivator_1_alpha,chr4:23756664-23905712:-,POLN->chr4:2073645-2243848:-,polymerase_(DNA)_nu	NCIH1436_LUNG	0.74	1	0.2763	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	GTF2H5--TULP4	14	1	GTF2H5	2113	chr6:158591570:+	TULP4	20698	chr6:158882595:+	ONLY_REF_SPLICE	YES	5	17	0.75	0.47	0.1934	0.0138	GTF2H5->chr6:158589384-158620376:+,general_transcription_factor_IIH_subunit_5,TULP4->chr6:158733692-158932860:+,tubby_like_protein_4	NCIH1436_LUNG	0.47	0.75	0.2072	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	MT-TA--MT-TC	14	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1934	0.0138	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1436_LUNG	1	1	0.2072	FALSE	462	80	0	856	0	FALSE	ACH-000830
NCIH1436_LUNG	RP11-444D3.1--SOX5	13	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	3	1	0.84	0.1796	0.0414	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1436_LUNG	0.84	1	0.221	TRUE	477	1352	189	275	0	FALSE	ACH-000830
NCIH1436_LUNG	RP11-123O10.4--GRIP1	4	20	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	1	1	0.96	0.96	0.0553	0.2763	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1436_LUNG	0.96	0.96	0.3316	FALSE	93	270	15	244	0	FALSE	ACH-000830
NCIH1436_LUNG	RP11-319G9.5--WWOX	7	6	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	60	1	0.18	0.0967	0.0829	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	NCIH1436_LUNG	0.18	1	0.1796	FALSE	154	425	28	76	0	FALSE	ACH-000830
NCIH1436_LUNG	MT-ND6--MT-TE	7	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0967	0.0414	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1436_LUNG	1	1	0.1381	FALSE	499	1288	110	792	0	FALSE	ACH-000830
NCIH1436_LUNG	RP11-680G10.1--GSE1	7	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0967	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1436_LUNG	1	1	0.0967	TRUE	465	1949	224	605	0	FALSE	ACH-000830
NCIH1436_LUNG	RP11-108K3.1--GLDN	6	2	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	2	25	0.8	0.24	0.0829	0.0276	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH1436_LUNG	0.24	0.8	0.1105	FALSE	0	19	0	46	0	FALSE	ACH-000830
NCIH1436_LUNG	RP11-120D5.1--MID1	6	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	11	0.8	0.42	0.0829	0.0276	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1436_LUNG	0.42	0.8	0.1105	FALSE	16	356	14	466	0	FALSE	ACH-000830
NCIH1436_LUNG	C15orf57--CBX3	5	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	39	23	0.2	0.3	0.0691	0.0691	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1436_LUNG	0.2	0.3	0.1382	TRUE	267	562	48	632	0	FALSE	ACH-000830
NCIH1436_LUNG	GDAP1--RP11-758M4.1	6	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	196	0	0.03	1	0.0829	0.0138	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH1436_LUNG	0.03	1	0.0967	TRUE	7	28	0	43	0	FALSE	ACH-000830
NCIH1436_LUNG	CALM3--MT-ND4L	5	4	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1368	0	0.01	1	0.0691	0.0553	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1436_LUNG	0.01	1	0.1244	FALSE	1	1	0	107	0	FALSE	ACH-000830
NCIH1436_LUNG	MT-ND6--MT-TE	5	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0691	0.0414	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1436_LUNG	1	1	0.1105	FALSE	499	1288	110	792	0	FALSE	ACH-000830
NCIH1436_LUNG	CTD-2008L17.1--RP11-456O19.2	5	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0691	0.0276	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1436_LUNG	0.64	1	0.0967	FALSE	33	240	4	98	0	FALSE	ACH-000830
NCIH1436_LUNG	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0691	0.0276	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1436_LUNG	0.88	1	0.0967	FALSE	515	4851	409	746	0	FALSE	ACH-000830
NCIH1436_LUNG	RP11-680G10.1--GSE1	4	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	4	23	0.64	0.23	0.0553	0.0414	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1436_LUNG	0.23	0.64	0.0967	TRUE	458	1351	185	561	0	FALSE	ACH-000830
NCIH1436_LUNG	DLX6-AS1--SHFM1	4	2	DLX6-AS1	1141	chr7:96643237:-	SHFM1	30560	chr7:96324203:-	ONLY_REF_SPLICE	YES	178	881	0.03	0.01	0.0553	0.0276	DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	NCIH1436_LUNG	0.01	0.03	0.0829	FALSE	0	2	0	4	2	FALSE	ACH-000830
NCIH1436_LUNG	MT-ND6--MT-TE	3	6	MT-ND6	1053	chrM:14621:-	MT-TE	4526	chrM:14742:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0.0829	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1436_LUNG	1	1	0.1243	FALSE	499	1288	110	792	0	FALSE	ACH-000830
NCIH1436_LUNG	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0553	0.0276	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1436_LUNG	0.86	1	0.0829	FALSE	407	2205	196	549	0	FALSE	ACH-000830
NCIH1436_LUNG	LMO7--MPRIP	3	5	LMO7	10788	chr13:76335174:+	MPRIP	94567	chr17:17120804:+	ONLY_REF_SPLICE	YES	64	1	0.11	0.89	0.0414	0.0691	LMO7->LIM_domain_7,Oncogene{Bushman},chr13:76194570-76434004:+,MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein	NCIH1436_LUNG	0.11	0.89	0.1105	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	MT-ND5--MT-ND6	4	1	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	2	1423	0.71	0	0.0553	0.0138	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH1436_LUNG	0	0.71	0.0691	FALSE	26	124	4	93	0	FALSE	ACH-000830
NCIH1436_LUNG	MT-ND6--MT-TE	4	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0553	0.0138	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1436_LUNG	1	1	0.0691	FALSE	499	1288	110	792	0	FALSE	ACH-000830
NCIH1436_LUNG	MT-TA--MT-TC	4	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0553	0.0138	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1436_LUNG	1	1	0.0691	FALSE	462	80	0	856	0	FALSE	ACH-000830
NCIH1436_LUNG	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0553	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1436_LUNG	1	1	0.0553	FALSE	13	9	0	364	0	FALSE	ACH-000830
NCIH1436_LUNG	MT-ND6--MT-TE	3	4	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0.0553	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1436_LUNG	1	1	0.0967	FALSE	499	1288	110	792	0	FALSE	ACH-000830
NCIH1436_LUNG	NTM--COTL1	4	0	NTM	4884	chr11:131530922:+	COTL1	38649	chr16:84600328:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0553	0	NTM->chr11:131240373-132206716:+,neurotrimin,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	NCIH1436_LUNG	1	1	0.0553	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	VWDE--PHF14	4	0	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0553	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1436_LUNG	1	1	0.0553	TRUE	0	6	0	17	2	TRUE	ACH-000830
NCIH1436_LUNG	MT-ND6--MT-TE	3	2	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0.0276	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1436_LUNG	1	1	0.069	FALSE	499	1288	110	792	0	FALSE	ACH-000830
NCIH1436_LUNG	NRIP1--AF127936.7	3	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0414	0.0276	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1436_LUNG	0.71	1	0.069	FALSE	292	1546	117	613	0	FALSE	ACH-000830
NCIH1436_LUNG	SHFM1--DLX6-AS1	3	1	SHFM1	7020	chr7:96324110:-	DLX6-AS1	31487	chr7:96598430:-	ONLY_REF_SPLICE	YES	792	399	0.01	0.01	0.0414	0.0138	SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-	NCIH1436_LUNG	0.01	0.01	0.0552	FALSE	0	1	0	6	0	FALSE	ACH-000830
NCIH1436_LUNG	AP000769.1--SF1	3	0	AP000769.1	1075	chr11:65222802:+	SF1	7959	chr11:64544098:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0414	0	AP000769.1->chr11:65222728-65234028:+,SF1->chr11:64532078-64546258:-,splicing_factor_1	NCIH1436_LUNG	1	1	0.0414	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	HSP90AB1--MT-RNR2	3	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1436_LUNG	1	1	0.0414	FALSE	13	9	0	364	0	FALSE	ACH-000830
NCIH1436_LUNG	RP4-565E6.1--HYDIN	2	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	16	1	0.27	0.0276	0.0553	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1436_LUNG	0.27	1	0.0829	TRUE	84	87	4	41	0	FALSE	ACH-000830
NCIH1436_LUNG	TIMM23B--LINC00843	2	3	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0276	0.0414	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1436_LUNG	0.83	1	0.069	TRUE	62	24	1	171	0	FALSE	ACH-000830
NCIH1436_LUNG	DLX6-AS1--SHFM1	2	2	DLX6-AS1	2620	chr7:96641137:-	SHFM1	30560	chr7:96324203:-	ONLY_REF_SPLICE	YES	386	881	0.01	0	0.0276	0.0276	DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	NCIH1436_LUNG	0	0.01	0.0552	FALSE	0	3	0	2	1	FALSE	ACH-000830
NCIH1436_LUNG	CHD7--RAB2A	2	1	CHD7	1305	chr8:61591641:+	RAB2A	45475	chr8:61471411:+	ONLY_REF_SPLICE	YES	48	276	0.06	0.01	0.0276	0.0138	LOCAL_REARRANGEMENT:+:[55151],CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7,RAB2A->RAB2A,_member_RAS_oncogene_family,chr8:61429416-61536186:+	NCIH1436_LUNG	0.01	0.06	0.0414	FALSE	0	4	0	2	3	FALSE	ACH-000830
NCIH1436_LUNG	RP11-108K3.1--GLDN	2	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	4	25	0.43	0.11	0.0276	0.0138	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH1436_LUNG	0.11	0.43	0.0414	FALSE	0	30	1	55	0	FALSE	ACH-000830
NCIH1436_LUNG	AC087294.2--SON	2	0	AC087294.2	1120	chr17:21117763:+	SON	20889	chr21:34931536:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	AC087294.2->chr17:21117644-21133348:+,SON->SON_DNA_binding_protein,chr21:34914924-34949812:+	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	CPSF6--CHMP1A	2	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH1436_LUNG	1	1	0.0276	TRUE	95	74	6	34	0	FALSE	ACH-000830
NCIH1436_LUNG	CRHR1--LBR	2	0	CRHR1	2396	chr17:43707524:+	LBR	30128	chr1:225598118:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	CRHR1->chr17:43699267-43913194:+,corticotropin_releasing_hormone_receptor_1,LBR->chr1:225589204-225616627:-,lamin_B_receptor	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	DLX6-AS1--RHEB	2	0	DLX6-AS1	1141	chr7:96643237:-	RHEB	28956	chr7:151188100:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-,RHEB->Ras_homolog_enriched_in_brain,chr7:151163098-151217206:-	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	HUWE1--ANGEL2	2	0	HUWE1	23976	chrX:53634484:-	ANGEL2	84062	chr1:213181808:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,ANGEL2->angel_homolog_2_(Drosophila),chr1:213165524-213189168:-	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	MCM3--DDX17	2	0	MCM3	3647	chr6:52146843:-	DDX17	23008	chr22:38897285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	MCM3->chr6:52128807-52149679:-,minichromosome_maintenance_complex_component_3,DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	MEA1--LMBR1	2	0	MEA1	2043	chr6:42980664:-	LMBR1	34700	chr7:156472000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	MEA1->chr6:42979832-42981706:-,male-enhanced_antigen_1,LMBR1->chr7:156461646-156685924:-,limb_development_membrane_protein_1	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	MMP26--LUC7L	2	0	MMP26	1119	chr11:4726275:+	LUC7L	16601	chr16:258187:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	MMP26->chr11:4726157-5013659:+,matrix_metallopeptidase_26,LUC7L->LUC7_like,chr16:238968-279462:-	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	RP11-444D3.1--SOX5	1	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	13900	chr12:24102595:-	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0138	0.0553	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1436_LUNG	0.83	1	0.0691	TRUE	8	10	1	12	0	FALSE	ACH-000830
NCIH1436_LUNG	SLC25A32--YWHAZ	2	0	SLC25A32	1406	chr8:104427012:-	YWHAZ	20405	chr8:101937267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	U2AF1--PTBP1	2	0	U2AF1	1137	chr21:44527561:-	PTBP1	22504	chr19:805492:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	HGNC_GENEFAM,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	UTP14A--SMARCA1	2	0	UTP14A	4627	chrX:129045126:+	SMARCA1	22513	chrX:128645960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	UTP14A->UTP14A_small_subunit_processome_component,chrX:129040097-129063737:+,SMARCA1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_1,chrX:128580480-128657477:-	NCIH1436_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000830
NCIH1436_LUNG	NRIP1--AF127936.7	1	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.23	1	0.0138	0.0276	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1436_LUNG	0.23	1	0.0414	FALSE	125	705	46	456	0	FALSE	ACH-000830
NCIH1436_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0138	0.0276	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1436_LUNG	0.75	1	0.0414	FALSE	467	2173	244	435	0	FALSE	ACH-000830
NCIH1436_LUNG	RPA3-AS1--ICA1	1	2	RPA3-AS1	9814	chr7:7841374:+	ICA1	28950	chr7:8198282:-	ONLY_REF_SPLICE	YES	22	292	0.12	0.01	0.0138	0.0276	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},RPA3-AS1->chr7:7680342-8043689:+,ICA1->chr7:8152814-8302317:-,islet_cell_autoantigen_1	NCIH1436_LUNG	0.01	0.12	0.0414	FALSE	0	1	0	2	0	FALSE	ACH-000830
NCIH1436_LUNG	BRWD1--CREBZF	1	1	BRWD1	4942	chr21:40670358:-	CREBZF	59459	chr11:85374645:-	ONLY_REF_SPLICE	NO	80	263	0.02	0.01	0.0138	0.0138	BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,CREBZF->CREB/ATF_bZIP_transcription_factor,chr11:85370752-85393951:-	NCIH1436_LUNG	0.01	0.02	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000830
NCIH1436_LUNG	DTL--INTS7	1	1	DTL	4858	chr1:212220759:+	INTS7	23447	chr1:212194554:-	ONLY_REF_SPLICE	YES	181	201	0.01	0.01	0.0138	0.0138	LOCAL_INVERSION:+:-:[35],DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,INTS7->chr1:212113741-212208884:-,integrator_complex_subunit_7	NCIH1436_LUNG	0.01	0.01	0.0276	FALSE	0	0	0	2	0	FALSE	ACH-000830
NCIH1436_LUNG	MBTPS1--SLC7A5	1	1	MBTPS1	1172	chr16:84150340:-	SLC7A5	40083	chr16:87874761:-	ONLY_REF_SPLICE	NO	106	514	0.02	0	0.0138	0.0138	MBTPS1->chr16:84087368-84150511:-,membrane_bound_transcription_factor_peptidase,_site_1,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	NCIH1436_LUNG	0	0.02	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000830
NCIH1436_LUNG	N4BP2--UBE2K	1	1	N4BP2	2302	chr4:40075171:+	UBE2K	37961	chr4:39779980:+	ONLY_REF_SPLICE	NO	23	264	0.08	0.01	0.0138	0.0138	N4BP2->NEDD4_binding_protein_2,chr4:40058446-40159872:+,UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K	NCIH1436_LUNG	0.01	0.08	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000830
NCIH1436_LUNG	PQLC2--CAPZB	1	1	PQLC2	1564	chr1:19639383:+	CAPZB	22762	chr1:19671746:-	ONLY_REF_SPLICE	YES	40	476	0.05	0	0.0138	0.0138	LOCAL_INVERSION:+:-:[9473],PQLC2->PQ_loop_repeat_containing_2,chr1:19638820-19655794:+,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	NCIH1436_LUNG	0	0.05	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000830
NCIH1436_LUNG	PTPN18--PSMA4	1	1	PTPN18	3432	chr2:131117219:+	PSMA4	17268	chr15:78834519:+	ONLY_REF_SPLICE	NO	31	325	0.06	0.01	0.0138	0.0138	PTPN18->chr2:131113580-131132982:+,protein_tyrosine_phosphatase,_non-receptor_type_18,PSMA4->chr15:78832747-78841604:+,proteasome_subunit_alpha_4	NCIH1436_LUNG	0.01	0.06	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000830
NCIH1436_LUNG	RORA--ANXA2	1	1	RORA	13827	chr15:60884586:-	ANXA2	53106	chr15:60678285:-	ONLY_REF_SPLICE	YES	42	88	0.05	0.02	0.0138	0.0138	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	NCIH1436_LUNG	0.02	0.05	0.0276	FALSE	4	3	0	6	0	FALSE	ACH-000830
NCIH1436_LUNG	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	11	0.25	0.15	0.0138	0.0138	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1436_LUNG	0.15	0.25	0.0276	FALSE	0	48	1	163	0	FALSE	ACH-000830
NCIH1436_LUNG	SHFM1--DLX6-AS1	1	1	SHFM1	1204	chr7:96339000:-	DLX6-AS1	31487	chr7:96598430:-	ONLY_REF_SPLICE	YES	843	399	0	0	0.0138	0.0138	SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-	NCIH1436_LUNG	0	0	0.0276	FALSE	0	0	0	4	0	FALSE	ACH-000830
NCIH1436_LUNG	SLC35E2B--ZNF274	1	1	SLC35E2B	9194	chr1:1599766:-	ZNF274	27211	chr19:58721327:+	ONLY_REF_SPLICE	YES	125	21	0.02	0.09	0.0138	0.0138	SLC35E2B->chr1:1592939-1624167:-,solute_carrier_family_35_member_E2B,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	NCIH1436_LUNG	0.02	0.09	0.0276	TRUE	0	0	0	1	0	FALSE	ACH-000830
NCIH1436_LUNG	UBE3A--SNRPN	1	1	UBE3A	6435	chr15:25650608:-	SNRPN	29711	chr15:25207261:+	ONLY_REF_SPLICE	YES	76	12	0.03	0.14	0.0138	0.0138	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1},UBE3A->Oncogene{Bushman},chr15:25582381-25684128:-,ubiquitin_protein_ligase_E3A,SNRPN->chr15:25068794-25223870:+,small_nuclear_ribonucleoprotein_polypeptide_N	NCIH1436_LUNG	0.03	0.14	0.0276	TRUE	0	0	0	1	0	FALSE	ACH-000830
NCIH1436_LUNG	ZNF251--CHMP1A	1	1	ZNF251	3735	chr8:145979068:-	CHMP1A	15210	chr16:89713739:-	ONLY_REF_SPLICE	YES	43	250	0.04	0.01	0.0138	0.0138	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Aorta=1,Colon_-_Sigmoid=1,Cells_-_Transformed_fibroblasts=1,Brain_-_Amygdala=1},ZNF251->chr8:145946298-145981802:-,zinc_finger_protein_251,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH1436_LUNG	0.01	0.04	0.0276	FALSE	3	5	0	3	0	FALSE	ACH-000830
NCIH1436_LUNG	ZNF736--TP53BP1	1	1	ZNF736	8361	chr7:63797360:+	TP53BP1	30291	chr15:43762264:-	ONLY_REF_SPLICE	YES	34	65	0.06	0.03	0.0138	0.0138	GTEx&tcga_normals:1/3694=0.03%,ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	NCIH1436_LUNG	0.03	0.06	0.0276	TRUE	0	0	0	1	0	FALSE	ACH-000830
RKO_LARGE_INTESTINE	MT-ND5--MT-ATP8	150	11	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4638	7	0.03	0.96	2.1392	0.1569	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	0.03	0.96	2.2961	FALSE	43	37	8	105	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	TIMM23B--LINC00843	118	49	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.98	1.6828	0.6988	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RKO_LARGE_INTESTINE	0.98	1	2.3816	TRUE	508	994	45	981	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	TIMM23--RP11-464F9.1	62	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	643	6	0.09	0.92	0.8842	0.057	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RKO_LARGE_INTESTINE	0.09	0.92	0.9412	TRUE	519	3926	326	965	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	RP11-421F16.3--SUMO3	27	0	RP11-421F16.3	1829	chr12:27125347:+	SUMO3	11565	chr21:46228445:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3851	0	RP11-421F16.3->chr12:27124519-27132515:+,SUMO3->chr21:46225532-46238694:-,small_ubiquitin-like_modifier_3	RKO_LARGE_INTESTINE	1	1	0.3851	TRUE	0	0	0	3	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND5--MT-ATP8	18	22	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	7	0	0.85	1	0.2567	0.3137	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	0.85	1	0.5704	FALSE	43	37	8	105	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2424	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RKO_LARGE_INTESTINE	1	1	0.2424	TRUE	0	0	0	518	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	15	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2139	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	1	1	0.2139	FALSE	230	198	14	283	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND5--MT-ATP8	8	26	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1141	0.3708	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	1	1	0.4849	FALSE	43	37	8	105	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	C15orf57--CBX3	10	17	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	205	42	0.12	0.39	0.1426	0.2424	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RKO_LARGE_INTESTINE	0.12	0.39	0.385	TRUE	267	562	48	632	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	C15orf57--CBX3	10	16	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	200	42	0.12	0.38	0.1426	0.2282	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RKO_LARGE_INTESTINE	0.12	0.38	0.3708	TRUE	267	562	48	632	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MIPOL1--TTC6	12	5	MIPOL1	23226	chr14:37892154:+	TTC6	49694	chr14:38149356:+	ONLY_REF_SPLICE	YES	14	0	0.55	1	0.1711	0.0713	NEIGHBORS[43486],MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1,TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6	RKO_LARGE_INTESTINE	0.55	1	0.2424	FALSE	0	0	0	2	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND5--MT-ND4	5	33	MT-ND5	2813	chrM:14149:+	MT-ND4	5957	chrM:10904:+	INCL_NON_REF_SPLICE	YES	0	3031	1	0.01	0.0713	0.4706	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	RKO_LARGE_INTESTINE	0.01	1	0.5419	FALSE	29	25	1	23	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	13	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1854	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	1	1	0.1854	FALSE	230	193	14	283	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	16	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	13651	0	0	1	0.0856	0.2282	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	0	1	0.3138	FALSE	231	217	16	283	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	11	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14751	7	0	0.72	0.0998	0.1569	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	0	0.72	0.2567	FALSE	231	217	16	283	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	27	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0428	0.3851	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	1	1	0.4279	FALSE	43	37	8	105	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	27	MT-ND5	2792	chrM:14128:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0428	0.3851	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	1	1	0.4279	FALSE	43	37	8	105	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	RPSAP52--HMGA2	9	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	6	865	0.65	0.01	0.1284	0.0285	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	RKO_LARGE_INTESTINE	0.01	0.65	0.1569	FALSE	0	59	0	125	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	RPL12--GAS5	9	1	RPL12	3125	chr9:130211560:-	GAS5	11911	chr1:173833842:-	ONLY_REF_SPLICE	YES	5586	3030	0	0	0.1284	0.0143	RPL12->chr9:130209953-130213684:-,ribosomal_protein_L12,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	RKO_LARGE_INTESTINE	0	0	0.1427	TRUE	0	1	0	5	1	FALSE	ACH-000943
RKO_LARGE_INTESTINE	AGAP4--MSRB3	8	4	AGAP4	6720	chr10:46337101:-	MSRB3	23766	chr12:65762778:+	ONLY_REF_SPLICE	YES	111	1	0.1	0.92	0.1141	0.057	AGAP4->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_4,chr10:46321042-46349323:-,MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3	RKO_LARGE_INTESTINE	0.1	0.92	0.1711	TRUE	0	0	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1284	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	1	1	0.1284	FALSE	231	205	14	283	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	20	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	7	1	0.77	0.057	0.2852	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	0.77	1	0.3422	FALSE	209	205	15	279	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND5--MT-ATP8	5	15	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	NO	7	497	0.74	0.04	0.0713	0.2139	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	0.04	0.74	0.2852	FALSE	43	37	8	105	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND5--MT-ATP8	6	11	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6730	56	0	0.23	0.0856	0.1569	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	0	0.23	0.2425	FALSE	43	37	8	105	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ATP6--MT-CO1	7	5	MT-ATP6	1400	chrM:8926:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	13803	18098	0	0	0.0998	0.0713	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RKO_LARGE_INTESTINE	0	0	0.1711	FALSE	183	104	9	328	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	16	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12761	56	0	0.26	0.057	0.2282	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	0	0.26	0.2852	FALSE	231	217	16	283	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND5--MT-ND4	7	2	MT-ND5	2794	chrM:14130:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	0	9746	1	0	0.0998	0.0285	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	RKO_LARGE_INTESTINE	0	1	0.1283	FALSE	47	27	1	24	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	13	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	14640	777	0	0.02	0.057	0.1854	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	0	0.02	0.2424	FALSE	231	217	16	283	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	16	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	13596	0	0	1	0.0428	0.2282	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	0	1	0.271	FALSE	231	217	16	283	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND5--MT-ND4	3	16	MT-ND5	2730	chrM:14066:+	MT-ND4	6214	chrM:11161:+	INCL_NON_REF_SPLICE	YES	7	15874	0.73	0	0.0428	0.2282	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	RKO_LARGE_INTESTINE	0	0.73	0.271	FALSE	47	27	1	24	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND5--MT-ATP8	4	9	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	2744	1133	0	0.01	0.057	0.1284	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	0	0.01	0.1854	FALSE	43	37	8	105	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	YWHAE--CRK	6	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	3189	129	0	0.05	0.0856	0.0143	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	RKO_LARGE_INTESTINE	0	0.05	0.0999	FALSE	6	50	7	115	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0856	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RKO_LARGE_INTESTINE	1	1	0.0856	FALSE	183	104	9	328	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0856	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	1	1	0.0856	FALSE	230	193	14	283	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	8	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	17652	730	0	0.02	0.057	0.1141	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	0	0.02	0.1711	FALSE	231	217	16	283	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	8	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	14798	1538	0	0.01	0.057	0.1141	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	0	0.01	0.1711	FALSE	231	217	16	283	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0856	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RKO_LARGE_INTESTINE	1	1	0.0856	TRUE	465	1949	224	605	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	RP11-680G10.1--GSE1	5	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	4	1	0.67	0.0713	0.0428	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RKO_LARGE_INTESTINE	0.67	1	0.1141	TRUE	458	1351	185	561	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	C1orf159--SDF4	5	0	C1orf159	1302	chr1:1051440:-	SDF4	25211	chr1:1154323:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0713	0	C1orf159->chr1:1017198-1051741:-,chromosome_1_open_reading_frame_159,SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4	RKO_LARGE_INTESTINE	1	1	0.0713	TRUE	0	0	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	MT-ATP6--MT-CO1	5	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0713	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RKO_LARGE_INTESTINE	1	1	0.0713	FALSE	183	104	9	328	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	4	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	16898	0	0	1	0.057	0.057	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	0	1	0.114	FALSE	231	217	16	283	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	4	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16573	56	0	0.12	0.057	0.057	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	0	0.12	0.114	FALSE	231	217	16	283	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND5--MT-ND4	3	8	MT-ND5	1735	chrM:13071:+	MT-ND4	5927	chrM:10874:+	INCL_NON_REF_SPLICE	YES	2812	1048	0	0.01	0.0428	0.1141	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	RKO_LARGE_INTESTINE	0	0.01	0.1569	FALSE	29	25	1	21	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	5	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3448	20189	0	0	0.0428	0.0713	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RKO_LARGE_INTESTINE	0	0	0.1141	FALSE	183	104	9	328	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	C17orf76-AS1--IFT74	4	0	C17orf76-AS1	1593	chr17:16342728:+	IFT74	32311	chr9:27044740:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0	C17orf76-AS1->chr17:16342136-16381992:+,IFT74->chr9:26947037-27062928:+,intraflagellar_transport_74	RKO_LARGE_INTESTINE	1	1	0.057	TRUE	0	1	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RKO_LARGE_INTESTINE	1	1	0.057	FALSE	183	104	9	328	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	1	1	0.057	FALSE	230	193	14	283	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	0	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	1	1	0.057	FALSE	231	205	14	283	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RKO_LARGE_INTESTINE	1	1	0.057	TRUE	0	0	0	434	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	POLE4--RP11-355F16.1	3	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	698	1	0.01	0.8	0.0428	0.0143	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	RKO_LARGE_INTESTINE	0.01	0.8	0.0571	FALSE	5	7	0	37	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0428	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RKO_LARGE_INTESTINE	1	1	0.0428	FALSE	183	104	9	328	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0428	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	1	1	0.0428	FALSE	230	198	14	283	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0428	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RKO_LARGE_INTESTINE	1	1	0.0428	FALSE	231	204	14	283	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	CLIC1--RPL7	2	3	CLIC1	4985	chr6:31701613:-	RPL7	14663	chr8:74203896:-	ONLY_REF_SPLICE	NO	3368	12684	0	0	0.0285	0.0428	CLIC1->chloride_intracellular_channel_1,chr6:31698358-31707540:-,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	RKO_LARGE_INTESTINE	0	0	0.0713	FALSE	0	0	0	12	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	PINX1--RP1L1	2	2	PINX1	6234	chr8:10683662:-	RP1L1	17312	chr8:10480730:-	ONLY_REF_SPLICE	YES	102	0	0.04	1	0.0285	0.0285	NEIGHBORS[52776],PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	RKO_LARGE_INTESTINE	0.04	1	0.057	FALSE	1	8	0	15	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	PBX3--MAPKAP1	2	1	PBX3	2279	chr9:128510902:+	MAPKAP1	23367	chr9:128434922:-	ONLY_REF_SPLICE	YES	86	433	0.03	0.01	0.0285	0.0143	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	RKO_LARGE_INTESTINE	0.01	0.03	0.0428	FALSE	0	1	0	3	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	ANO6--XPO1	2	0	ANO6	5906	chr12:45695876:+	XPO1	40354	chr2:61761038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	ANO6->anoctamin_6,chr12:45609770-45834187:+,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	C17orf62--EEF1D	2	0	C17orf62	1130	chr17:80408576:-	EEF1D	23368	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	C17orf62->chr17:80400465-80408705:-,chromosome_17_open_reading_frame_62,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	C17orf76-AS1--MKI67	2	0	C17orf76-AS1	1593	chr17:16342728:+	MKI67	16302	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	C17orf76-AS1->chr17:16342136-16381992:+,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	2	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	CASC3--ZNF282	2	0	CASC3	2290	chr17:38297860:+	ZNF282	17842	chr7:148903788:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+,ZNF282->chr7:148892577-148923339:+,zinc_finger_protein_282	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	EMC2--EIF3E	2	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	12	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	FRMD6--ADAM17	2	0	FRMD6	3591	chr14:52021523:+	ADAM17	36587	chr2:9683414:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,ADAM17->ADAM_metallopeptidase_domain_17,chr2:9628615-9695921:-	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	PRDM16--SKI	2	0	PRDM16	1129	chr1:2985860:+	SKI	35669	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1]},PRDM16->Oncogene{Bushman},PR_domain_16,chr1:2985732-3355185:+,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	2	0	0	4	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	PROCR--NABP2	2	0	PROCR	3683	chr20:33764249:+	NABP2	10035	chr12:56618618:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	PROCR->chr20:33759876-33765165:+,protein_C_receptor,NABP2->chr12:56615799-56623638:+,nucleic_acid_binding_protein_2	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	SH2B1--EZH2	2	0	SH2B1	9365	chr16:28880704:+	EZH2	25971	chr7:148516779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	SH2B1->SH2B_adaptor_protein_1,chr16:28857921-28885526:+,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	UPP1--THOC5	2	0	UPP1	2737	chr7:48129961:+	THOC5	23795	chr22:29935465:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	UPP1->chr7:48128225-48148330:+,uridine_phosphorylase_1,THOC5->Oncogene{Bushman},THO_complex_5,chr22:29901868-29951205:-	RKO_LARGE_INTESTINE	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000943
RKO_LARGE_INTESTINE	RPL4--TSTA3	1	3	RPL4	5555	chr15:66795396:-	TSTA3	18350	chr8:144695465:-	ONLY_REF_SPLICE	YES	7912	552	0	0.01	0.0143	0.0428	RPL4->chr15:66790355-66816870:-,ribosomal_protein_L4,TSTA3->chr8:144694788-144700218:-,tissue_specific_transplantation_antigen_P35B	RKO_LARGE_INTESTINE	0	0.01	0.0571	FALSE	0	2	0	1	1	FALSE	ACH-000943
RKO_LARGE_INTESTINE	PINX1--RP1L1	1	2	PINX1	8617	chr8:10677703:-	RP1L1	17312	chr8:10480730:-	ONLY_REF_SPLICE	YES	91	0	0.03	1	0.0143	0.0285	NEIGHBORS[52776],PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	RKO_LARGE_INTESTINE	0.03	1	0.0428	FALSE	0	0	0	1	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	ANO7--DTYMK	1	1	ANO7	20467	chr2:242157796:+	DTYMK	27774	chr2:242625292:-	ONLY_REF_SPLICE	NO	8	493	0.2	0	0.0143	0.0143	ANO7->anoctamin_7,chr2:242127924-242164792:+,DTYMK->chr2:242615157-242626406:-,deoxythymidylate_kinase	RKO_LARGE_INTESTINE	0	0.2	0.0286	FALSE	0	0	0	1	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	BAIAP2--WRAP73	1	1	BAIAP2	1161	chr17:79009108:+	WRAP73	36846	chr1:3555386:-	ONLY_REF_SPLICE	NO	63	144	0.03	0.01	0.0143	0.0143	BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+,WRAP73->WD_repeat_containing,_antisense_to_TP73,chr1:3547331-3569325:-	RKO_LARGE_INTESTINE	0.01	0.03	0.0286	FALSE	0	0	0	1	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	CCDC14--ENO1	1	1	CCDC14	4735	chr3:123675587:-	ENO1	32505	chr1:8925541:-	ONLY_REF_SPLICE	YES	189	1684	0.01	0	0.0143	0.0143	CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	RKO_LARGE_INTESTINE	0	0.01	0.0286	FALSE	0	0	0	1	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	DANCR--ITGB3BP	1	1	DANCR	1530	chr4:53579126:+	ITGB3BP	18619	chr1:63920639:-	ONLY_REF_SPLICE	YES	1001	311	0	0.01	0.0143	0.0143	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	RKO_LARGE_INTESTINE	0	0.01	0.0286	FALSE	0	0	0	9	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	DANCR--NVL	1	1	DANCR	1530	chr4:53579126:+	NVL	29469	chr1:224455835:-	ONLY_REF_SPLICE	NO	1001	54	0	0.04	0.0143	0.0143	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,NVL->chr1:224415036-224518089:-,nuclear_VCP-like	RKO_LARGE_INTESTINE	0	0.04	0.0286	FALSE	0	0	0	3	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	DANCR--SNHG15	1	1	DANCR	1530	chr4:53579126:+	SNHG15	9829	chr7:45024025:-	ONLY_REF_SPLICE	NO	1001	1055	0	0	0.0143	0.0143	HGNC_GENEFAM,DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SNHG15->chr7:45022622-45026560:-,small_nucleolar_RNA_host_gene_15	RKO_LARGE_INTESTINE	0	0	0.0286	FALSE	0	0	0	1	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	EIF4A2--NVL	1	1	EIF4A2	5380	chr3:186505373:+	NVL	32872	chr1:224455835:-	ONLY_REF_SPLICE	YES	1316	54	0	0.04	0.0143	0.0143	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,NVL->chr1:224415036-224518089:-,nuclear_VCP-like	RKO_LARGE_INTESTINE	0	0.04	0.0286	FALSE	0	0	0	1	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	ELK3--CDK17	1	1	ELK3	5794	chr12:96617551:+	CDK17	19391	chr12:96728643:-	ONLY_REF_SPLICE	YES	125	112	0.02	0.02	0.0143	0.0143	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_INVERSION:+:-:[8426],ELK3->ELK3,_ETS_transcription_factor,Oncogene{Bushman},chr12:96588160-96663613:+,CDK17->chr12:96672039-96794338:-,cyclin-dependent_kinase_17	RKO_LARGE_INTESTINE	0.02	0.02	0.0286	TRUE	0	0	0	1	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	PBX3--MAPKAP1	1	1	PBX3	2279	chr9:128510902:+	MAPKAP1	31403	chr9:128348006:-	ONLY_REF_SPLICE	YES	86	416	0.02	0	0.0143	0.0143	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	RKO_LARGE_INTESTINE	0	0.02	0.0286	FALSE	0	2	0	5	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	RPL7A--ZEB1	1	1	RPL7A	1829	chr9:136215897:+	ZEB1	20599	chr10:31784705:+	ONLY_REF_SPLICE	YES	7093	173	0	0.01	0.0143	0.0143	RPL7A->chr9:136215069-136218281:+,ribosomal_protein_L7a,ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1	RKO_LARGE_INTESTINE	0	0.01	0.0286	FALSE	0	0	0	1	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	TEX10--ERP44	1	1	TEX10	1168	chr9:103115054:-	ERP44	27495	chr9:102814814:-	ONLY_REF_SPLICE	NO	192	211	0.01	0.01	0.0143	0.0143	TEX10->chr9:103064359-103115221:-,testis_expressed_10,ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44	RKO_LARGE_INTESTINE	0.01	0.01	0.0286	FALSE	0	0	0	1	0	FALSE	ACH-000943
RKO_LARGE_INTESTINE	YAF2--PPHLN1	1	1	YAF2	10231	chr12:42604157:-	PPHLN1	38762	chr12:42781258:+	ONLY_REF_SPLICE	YES	199	222	0.01	0.01	0.0143	0.0143	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=2,Pancreas=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[98],YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,PPHLN1->chr12:42632249-42853517:+,periphilin_1	RKO_LARGE_INTESTINE	0.01	0.01	0.0286	FALSE	0	0	0	1	0	FALSE	ACH-000943
LS1034_LARGE_INTESTINE	ADAP1--PRKAR1B	787	403	ADAP1	9672	chr7:959605:-	PRKAR1B	30892	chr7:647089:-	ONLY_REF_SPLICE	YES	160	45	0.88	0.96	10.448	5.3501	{Klijn_CCL:Colo-Rectal=1},ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	LS1034_LARGE_INTESTINE	0.88	0.96	15.7981	TRUE	0	0	0	1	0	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	ADAP1--PRKAR1B	55	401	ADAP1	9668	chr7:959609:-	PRKAR1B	30892	chr7:647089:-	INCL_NON_REF_SPLICE	YES	156	45	0.75	0.91	0.7302	5.3235	{Klijn_CCL:Colo-Rectal=1},ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	LS1034_LARGE_INTESTINE	0.75	0.91	6.0537	TRUE	0	0	0	1	0	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	TIMM23B--LINC00843	97	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	1.2877	0.1991	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LS1034_LARGE_INTESTINE	0.98	1	1.4868	TRUE	508	994	45	981	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	TIMM23--RP11-464F9.1	60	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	177	5	0.26	0.92	0.7965	0.0133	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LS1034_LARGE_INTESTINE	0.26	0.92	0.8098	TRUE	519	3926	326	965	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	NOL9--ACOT7	44	12	NOL9	3474	chr1:6609631:-	ACOT7	36658	chr1:6341346:-	ONLY_REF_SPLICE	YES	3	75	0.95	0.43	0.5841	0.1593	{Klijn_CCL:Colo-Rectal=1},NOL9->chr1:6581407-6614595:-,nucleolar_protein_9,ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-	LS1034_LARGE_INTESTINE	0.43	0.95	0.7434	TRUE	0	0	0	1	0	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	MT-TA--MT-TC	40	11	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.531	0.146	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS1034_LARGE_INTESTINE	1	1	0.677	FALSE	462	80	0	856	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	ADAP1--PRKAR1B	8	133	ADAP1	9672	chr7:959605:-	PRKAR1B	34132	chr7:635941:-	ONLY_REF_SPLICE	YES	160	79	0.47	0.64	0.1062	1.7657	{Klijn_CCL:Colo-Rectal=1},ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	LS1034_LARGE_INTESTINE	0.47	0.64	1.8719	TRUE	0	0	0	1	0	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	ZNF654--HMGB2	33	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4381	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LS1034_LARGE_INTESTINE	1	1	0.4381	TRUE	0	0	0	518	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	MT-ND6--MT-TE	32	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4248	0.0133	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS1034_LARGE_INTESTINE	1	1	0.4381	FALSE	499	1288	110	792	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	KANSL1--ARL17B	27	14	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	23	64	0.64	0.39	0.3584	0.1859	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	LS1034_LARGE_INTESTINE	0.39	0.64	0.5443	TRUE	181	1564	124	196	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	MT-ND6--MT-TE	17	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2257	0.1991	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS1034_LARGE_INTESTINE	0.97	1	0.4248	FALSE	499	1288	110	792	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	RP11-661P17.1--SLCO3A1	20	2	RP11-661P17.1	3525	chr15:92016546:+	SLCO3A1	15689	chr15:92459223:+	ONLY_REF_SPLICE	YES	0	6	1	0.79	0.2655	0.0266	GTEx_FI:{Pancreas=[count:3=pct:1.7]},RP11-661P17.1->chr15:91951938-92148441:+,SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1	LS1034_LARGE_INTESTINE	0.79	1	0.2921	TRUE	1	11	1	4	10	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	MT-ND6--MT-TE	16	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2124	0.0133	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS1034_LARGE_INTESTINE	1	1	0.2257	FALSE	499	1288	110	792	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	MT-TA--MT-TC	10	9	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1328	0.1195	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS1034_LARGE_INTESTINE	1	1	0.2523	FALSE	462	80	0	856	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	MT-ND6--MT-TE	7	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0929	0.2257	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS1034_LARGE_INTESTINE	1	1	0.3186	FALSE	499	1288	110	792	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	9	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.1195	0.0266	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LS1034_LARGE_INTESTINE	0.85	1	0.1461	FALSE	515	4851	409	746	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	MT-ND6--MT-TE	4	21	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0531	0.2788	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS1034_LARGE_INTESTINE	0.96	1	0.3319	FALSE	499	1288	110	792	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	SLC1A5--MT-ND4L	8	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1062	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS1034_LARGE_INTESTINE	1	1	0.1062	FALSE	0	0	0	189	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	BIRC6--TTC27	6	6	BIRC6	80909	chr2:32836649:+	TTC27	107623	chr2:33036091:+	ONLY_REF_SPLICE	YES	80	28	0.13	0.3	0.0797	0.0797	{Klijn_CCL:Colo-Rectal=1},NEIGHBORS[9133],BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27	LS1034_LARGE_INTESTINE	0.13	0.3	0.1594	FALSE	0	0	0	1	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	18	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	4	0	0.84	1	0.0398	0.239	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LS1034_LARGE_INTESTINE	0.84	1	0.2788	FALSE	189	492	56	216	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	SAMD5--SASH1	7	2	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	22	0	0.29	1	0.0929	0.0266	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	LS1034_LARGE_INTESTINE	0.29	1	0.1195	TRUE	53	396	64	110	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	GRHL2--MAP2K2	6	5	GRHL2	4316	chr8:102565010:+	MAP2K2	25908	chr19:4117627:-	ONLY_REF_SPLICE	YES	15	51	0.42	0.18	0.0797	0.0664	{Klijn_CCL:Colo-Rectal=1},GRHL2->chr8:102504660-102681954:+,grainyhead_like_transcription_factor_2,MAP2K2->ArcherDX_panel,FoundationOne_panel,chr19:4090319-4124126:-,mitogen-activated_protein_kinase_kinase_2	LS1034_LARGE_INTESTINE	0.18	0.42	0.1461	TRUE	0	0	0	1	0	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	C15orf57--CBX3	6	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	68	21	0.12	0.3	0.0797	0.0398	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LS1034_LARGE_INTESTINE	0.12	0.3	0.1195	TRUE	267	562	48	632	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	ACTN4--MT-CO1	6	1	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	1167	20707	0.01	0	0.0797	0.0133	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LS1034_LARGE_INTESTINE	0	0.01	0.093	FALSE	0	0	0	30	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	MT-ATP6--MT-CO1	6	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9944	21313	0	0	0.0797	0.0133	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LS1034_LARGE_INTESTINE	0	0	0.093	FALSE	183	104	9	328	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	MT-TA--MT-TC	3	12	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0.1593	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS1034_LARGE_INTESTINE	1	1	0.1991	FALSE	462	80	0	856	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	RP3-368A4.5--FTX	5	4	RP3-368A4.5	1216	chrX:73461768:-	FTX	19525	chrX:73289419:-	ONLY_REF_SPLICE	YES	8	1	0.53	0.9	0.0664	0.0531	NEIGHBORS_OVERLAP:-:-:[41919],RP3-368A4.5->chrX:73420064-73461983:-,FTX->FTX_transcript,_XIST_regulator_(non-protein_coding),chrX:73183790-73513409:-	LS1034_LARGE_INTESTINE	0.53	0.9	0.1195	FALSE	0	3	0	2	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	ADAP1--PRKAR1B	2	15	ADAP1	6388	chr7:966189:-	PRKAR1B	30892	chr7:647089:-	ONLY_REF_SPLICE	YES	83	45	0.17	0.27	0.0266	0.1991	{Klijn_CCL:Colo-Rectal=1},ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	LS1034_LARGE_INTESTINE	0.17	0.27	0.2257	TRUE	0	0	0	1	0	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	MT-ND6--MT-ND5	5	1	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	2381	1489	0	0	0.0664	0.0133	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	LS1034_LARGE_INTESTINE	0	0	0.0797	FALSE	101	855	57	72	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	TRIM26--MT-ND4L	5	0	TRIM26	11370	chr6:30152598:-	MT-ND4L	14738	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0	TRIM26->chr6:30152232-30181204:-,tripartite_motif_containing_26,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS1034_LARGE_INTESTINE	1	1	0.0664	FALSE	0	0	0	3	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	MT-ND6--MT-ND5	4	2	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	3	1433	0.67	0	0.0531	0.0266	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	LS1034_LARGE_INTESTINE	0	0.67	0.0797	FALSE	101	855	57	72	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	AC104389.28--HBG1	4	0	AC104389.28	1084	chr11:5526799:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0531	0	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	LS1034_LARGE_INTESTINE	1	1	0.0531	FALSE	0	1	0	13	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	RP11-120D5.1--MID1	4	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0531	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LS1034_LARGE_INTESTINE	1	1	0.0531	FALSE	16	356	14	466	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	C15orf57--CBX3	3	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	63	21	0.07	0.19	0.0398	0.0266	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LS1034_LARGE_INTESTINE	0.07	0.19	0.0664	TRUE	267	562	48	632	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	LDLRAD3--PRR5L	3	2	LDLRAD3	5673	chr11:36120011:+	PRR5L	17578	chr11:36317840:+	INCL_NON_REF_SPLICE	YES	26	0	0.16	1	0.0398	0.0266	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	LS1034_LARGE_INTESTINE	0.16	1	0.0664	FALSE	0	52	1	15	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	11721	0	0	1	0.0398	0.0133	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LS1034_LARGE_INTESTINE	0	1	0.0531	FALSE	182	97	9	327	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	9863	20715	0	0	0.0398	0.0133	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LS1034_LARGE_INTESTINE	0	0	0.0531	FALSE	183	104	9	328	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	11627	18708	0	0	0.0398	0.0133	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LS1034_LARGE_INTESTINE	0	0	0.0531	FALSE	183	104	9	328	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	ATP6V0C--MT-CO2	3	0	ATP6V0C	2886	chr16:2569357:+	MT-CO2	6967	chrM:7804:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	ATP6V0C->ATPase_H+_transporting_V0_subunit_c,chr16:2563871-2570219:+,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	LS1034_LARGE_INTESTINE	1	1	0.0398	FALSE	0	0	0	9	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS1034_LARGE_INTESTINE	1	1	0.0398	FALSE	499	1288	110	792	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	TIMM23B--LINC00843	3	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0398	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LS1034_LARGE_INTESTINE	1	1	0.0398	TRUE	62	24	1	171	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	ECE2--PTK2	2	2	ECE2	1241	chr3:183967678:+	PTK2	37895	chr8:141829119:-	ONLY_REF_SPLICE	YES	51	47	0.07	0.08	0.0266	0.0266	ECE2->chr3:183967438-184010819:+,endothelin_converting_enzyme_2,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	LS1034_LARGE_INTESTINE	0.07	0.08	0.0532	TRUE	0	0	0	1	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0.0266	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LS1034_LARGE_INTESTINE	1	1	0.0532	FALSE	467	2173	244	435	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	EXOC4--LRGUK	2	1	EXOC4	25520	chr7:133502297:+	LRGUK	63465	chr7:133943009:+	ONLY_REF_SPLICE	NO	71	0	0.04	1	0.0266	0.0133	{Klijn_CCL:Stomach=1},NEIGHBORS[60710],EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,LRGUK->Oncogene{Bushman},chr7:133812052-133949343:+,leucine-rich_repeats_and_guanylate_kinase_domain_containing	LS1034_LARGE_INTESTINE	0.04	1	0.0399	FALSE	0	0	0	1	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	EPHX2--MYO6	2	0	EPHX2	21030	chr8:27401761:+	MYO6	57288	chr6:76617322:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	EPHX2->chr8:27348296-27403081:+,epoxide_hydrolase_2,MYO6->chr6:76458909-76629254:+,myosin_VI	LS1034_LARGE_INTESTINE	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	LDLRAD3--PRR5L	2	0	LDLRAD3	5673	chr11:36120011:+	PRR5L	34366	chr11:36422547:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	LS1034_LARGE_INTESTINE	1	1	0.0266	FALSE	12	71	0	11	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	PKP4--NCK2	2	0	PKP4	8477	chr2:159459616:+	NCK2	39017	chr2:106471504:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	PKP4->chr2:159313476-159539391:+,plakophilin_4,NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+	LS1034_LARGE_INTESTINE	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000252
LS1034_LARGE_INTESTINE	RP3-368A4.5--FTX	1	3	RP3-368A4.5	1216	chrX:73461768:-	FTX	20752	chrX:73251675:-	ONLY_REF_SPLICE	NO	8	0	0.33	1	0.0133	0.0398	NEIGHBORS_OVERLAP:-:-:[41919],RP3-368A4.5->chrX:73420064-73461983:-,FTX->FTX_transcript,_XIST_regulator_(non-protein_coding),chrX:73183790-73513409:-	LS1034_LARGE_INTESTINE	0.33	1	0.0531	FALSE	0	4	0	2	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	CPSF6--C9orf3	1	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	138	60	0.01	0.03	0.0133	0.0133	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	LS1034_LARGE_INTESTINE	0.01	0.03	0.0266	FALSE	53	99	2	44	0	FALSE	ACH-000252
LS1034_LARGE_INTESTINE	RP11-281P23.1--RP11-281P23.2	1	1	RP11-281P23.1	1582	chr4:11471455:+	RP11-281P23.2	13426	chr4:11771933:+	ONLY_REF_SPLICE	YES	4	1	0.33	0.67	0.0133	0.0133	RP11-281P23.1->chr4:11470874-11479820:+,RP11-281P23.2->chr4:11627338-11815582:+	LS1034_LARGE_INTESTINE	0.33	0.67	0.0266	TRUE	0	1	1	4	1	TRUE	ACH-000252
ISTMES1_PLEURA	TADA2B--TBC1D14	49	42	TADA2B	2647	chr4:7045576:+	TBC1D14	19304	chr4:6995911:+	ONLY_REF_SPLICE	YES	64	51	0.59	0.64	0.6359	0.545	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[8781],TADA2B->chr4:7043626-7059679:+,transcriptional_adaptor_2B,TBC1D14->TBC1_domain_family_member_14,chr4:6910969-7034845:+	ISTMES1_PLEURA	0.59	0.64	1.1809	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	RAB30--GRM5	46	32	RAB30	1233	chr11:82782733:-	GRM5	38034	chr11:88301160:-	ONLY_REF_SPLICE	YES	21	0	0.79	1	0.5969	0.4153	RAB30->RAB30,_member_RAS_oncogene_family,chr11:82684175-82782965:-,GRM5->chr11:88237744-88799113:-,glutamate_metabotropic_receptor_5	ISTMES1_PLEURA	0.79	1	1.0122	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	RP11-123O10.4--GRIP1	46	17	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5969	0.2206	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ISTMES1_PLEURA	1	1	0.8175	FALSE	416	2512	207	587	0	FALSE	ACH-000569
ISTMES1_PLEURA	SYNE2--ESR2	40	32	SYNE2	31483	chr14:64467437:+	ESR2	163054	chr14:64551770:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5191	0.4153	SYNE2->Oncogene{Bushman},chr14:64319683-64693165:+,spectrin_repeat_containing_nuclear_envelope_protein_2,ESR2->Oncogene{Bushman},chr14:64550950-64804830:-,estrogen_receptor_2	ISTMES1_PLEURA	1	1	0.9344	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	TIMM23B--LINC00843	37	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4801	0.1817	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ISTMES1_PLEURA	1	1	0.6618	TRUE	508	994	45	981	0	FALSE	ACH-000569
ISTMES1_PLEURA	MT-TA--MT-TC	38	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4931	0.0519	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ISTMES1_PLEURA	1	1	0.545	FALSE	462	80	0	856	0	FALSE	ACH-000569
ISTMES1_PLEURA	RP11-680G10.1--GSE1	32	11	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	42	1	0.51	0.4153	0.1427	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ISTMES1_PLEURA	0.51	1	0.558	TRUE	458	1351	185	561	0	FALSE	ACH-000569
ISTMES1_PLEURA	TIMM23--RP11-464F9.1	26	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	300	2	0.09	0.93	0.3374	0.026	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ISTMES1_PLEURA	0.09	0.93	0.3634	TRUE	519	3926	326	965	0	FALSE	ACH-000569
ISTMES1_PLEURA	USP45--OPN3	21	12	USP45	13521	chr6:99924019:-	OPN3	39047	chr1:241761299:-	ONLY_REF_SPLICE	YES	17	28	0.66	0.54	0.2725	0.1557	USP45->chr6:99880190-99969604:-,ubiquitin_specific_peptidase_45,OPN3->chr1:241753404-241840678:-,opsin_3	ISTMES1_PLEURA	0.54	0.66	0.4282	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	RP11-680G10.1--GSE1	18	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	91	1	0.22	0.2336	0.0908	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ISTMES1_PLEURA	0.22	1	0.3244	TRUE	465	1949	224	605	0	FALSE	ACH-000569
ISTMES1_PLEURA	NF2--RP11-496I2.7	10	30	NF2	13651	chr22:30069475:+	RP11-496I2.7	27051	chr14:19787439:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1298	0.3893	NF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:29999545-30094587:+,neurofibromin_2_(merlin),RP11-496I2.7->chr14:19787427-19787943:+	ISTMES1_PLEURA	1	1	0.5191	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	NRIP1--AF127936.7	16	6	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.81	1	0.2076	0.0779	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ISTMES1_PLEURA	0.81	1	0.2855	FALSE	292	1546	117	613	0	FALSE	ACH-000569
ISTMES1_PLEURA	FOCAD--MTAP	15	8	FOCAD	7198	chr9:20720533:+	MTAP	67071	chr9:21815432:+	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.1947	0.1038	FOCAD->chr9:20658308-20995954:+,focadhesin,MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase	ISTMES1_PLEURA	0.96	1	0.2985	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	KHDRBS1--HLA-C	17	0	KHDRBS1	4802	chr1:32498799:+	HLA-C	19309	chr6:31237305:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2206	0	KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+,HLA-C->chr6:31236526-31239907:-,major_histocompatibility_complex,_class_I,_C	ISTMES1_PLEURA	1	1	0.2206	FALSE	0	0	0	6	0	FALSE	ACH-000569
ISTMES1_PLEURA	SUCLG2--CX3CR1	12	16	SUCLG2	2254	chr3:67659879:-	CX3CR1	21737	chr3:39308009:-	ONLY_REF_SPLICE	YES	218	0	0.11	1	0.1557	0.2076	SUCLG2->chr3:67410884-67705038:-,succinate-CoA_ligase_GDP-forming_beta_subunit,CX3CR1->C-X3-C_motif_chemokine_receptor_1,chr3:39304985-39323226:-	ISTMES1_PLEURA	0.11	1	0.3633	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	HSP90AB1--MT-RNR2	12	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3892	0	0	1	0.1557	0.026	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ISTMES1_PLEURA	0	1	0.1817	FALSE	13	9	0	364	0	FALSE	ACH-000569
ISTMES1_PLEURA	MT-TA--MT-TC	11	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1427	0.0519	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ISTMES1_PLEURA	1	1	0.1946	FALSE	462	80	0	856	0	FALSE	ACH-000569
ISTMES1_PLEURA	RAB30--GRM5	3	33	RAB30	2335	chr11:82771119:-	GRM5	38034	chr11:88301160:-	ONLY_REF_SPLICE	YES	23	0	0.61	1	0.0389	0.4282	RAB30->RAB30,_member_RAS_oncogene_family,chr11:82684175-82782965:-,GRM5->chr11:88237744-88799113:-,glutamate_metabotropic_receptor_5	ISTMES1_PLEURA	0.61	1	0.4671	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	MTAP--RP11-408N14.1	9	2	MTAP	7556	chr9:21818201:+	RP11-408N14.1	25559	chr9:22204058:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.1168	0.026	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-408N14.1->chr9:22203989-22214671:-	ISTMES1_PLEURA	0.92	1	0.1428	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	FOCAD--MTAP	5	9	FOCAD	7198	chr9:20720533:+	MTAP	64756	chr9:21808806:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.0649	0.1168	FOCAD->chr9:20658308-20995954:+,focadhesin,MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase	ISTMES1_PLEURA	0.93	1	0.1817	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	FTH1--ACTG1	6	4	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	5721	0	0	1	0.0779	0.0519	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	ISTMES1_PLEURA	0	1	0.1298	TRUE	0	0	0	64	0	FALSE	ACH-000569
ISTMES1_PLEURA	COL1A1--NPM1	4	10	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	4166	3	0	0.82	0.0519	0.1298	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	ISTMES1_PLEURA	0	0.82	0.1817	TRUE	0	0	0	31	0	FALSE	ACH-000569
ISTMES1_PLEURA	HSP90AB1--MT-RNR2	6	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3918	0	0	1	0.0779	0.026	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ISTMES1_PLEURA	0	1	0.1039	FALSE	13	9	0	364	0	FALSE	ACH-000569
ISTMES1_PLEURA	MT-TA--MT-TC	5	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0.0649	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ISTMES1_PLEURA	1	1	0.1298	FALSE	462	80	0	856	0	FALSE	ACH-000569
ISTMES1_PLEURA	POLE4--RP11-355F16.1	5	5	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	778	0	0.01	1	0.0649	0.0649	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	ISTMES1_PLEURA	0.01	1	0.1298	TRUE	5	7	0	37	0	FALSE	ACH-000569
ISTMES1_PLEURA	ZNF133--RP4-568F9.6	5	4	ZNF133	4994	chr20:18287037:+	RP4-568F9.6	15984	chr20:18328186:-	ONLY_REF_SPLICE	YES	7	0	0.56	1	0.0649	0.0519	LOCAL_INVERSION:+:-:[5556],ZNF133->chr20:18269121-18297640:+,zinc_finger_protein_133,RP4-568F9.6->chr20:18303196-18339944:-	ISTMES1_PLEURA	0.56	1	0.1168	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	CNN3--TUBB	5	0	CNN3	9144	chr1:95363383:-	TUBB	16343	chr6:30691310:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0	CNN3->calponin_3,chr1:95362507-95392834:-,TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I	ISTMES1_PLEURA	1	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	FTH1--ACTG1	4	4	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	5794	0	0	1	0.0519	0.0519	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	ISTMES1_PLEURA	0	1	0.1038	TRUE	0	0	0	64	0	FALSE	ACH-000569
ISTMES1_PLEURA	NRIP1--AF127936.7	2	12	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	45	0	0.24	1	0.026	0.1557	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ISTMES1_PLEURA	0.24	1	0.1817	FALSE	164	806	69	479	0	FALSE	ACH-000569
ISTMES1_PLEURA	NRIP1--AF127936.7	3	8	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	35	0	0.24	1	0.0389	0.1038	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ISTMES1_PLEURA	0.24	1	0.1427	FALSE	125	705	46	456	0	FALSE	ACH-000569
ISTMES1_PLEURA	RP11-123O10.4--GRIP1	3	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0389	0.0908	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ISTMES1_PLEURA	0.91	1	0.1297	FALSE	93	270	15	244	0	FALSE	ACH-000569
ISTMES1_PLEURA	SFPQ--ACTB	4	2	SFPQ	1338	chr1:35658412:-	ACTB	22349	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	302	2	0.02	0.75	0.0519	0.026	GTEx&tcga_normals:1/3694=0.03%,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	ISTMES1_PLEURA	0.02	0.75	0.0779	TRUE	0	0	0	3	0	FALSE	ACH-000569
ISTMES1_PLEURA	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	169	0.5	0.03	0.0519	0.013	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	ISTMES1_PLEURA	0.03	0.5	0.0649	FALSE	16	356	14	466	0	FALSE	ACH-000569
ISTMES1_PLEURA	CTB-113P19.1--FTL	3	4	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	4	0	0.64	1	0.0389	0.0519	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	ISTMES1_PLEURA	0.64	1	0.0908	TRUE	0	2	0	13	2	TRUE	ACH-000569
ISTMES1_PLEURA	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ISTMES1_PLEURA	1	1	0.0519	TRUE	0	0	0	434	0	FALSE	ACH-000569
ISTMES1_PLEURA	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ISTMES1_PLEURA	1	1	0.0519	TRUE	0	0	0	434	0	FALSE	ACH-000569
ISTMES1_PLEURA	FRMD4A--FAM107B	3	3	FRMD4A	4125	chr10:14372057:-	FAM107B	61917	chr10:14572514:-	ONLY_REF_SPLICE	YES	133	38	0.04	0.14	0.0389	0.0389	LOCAL_REARRANGEMENT:-:[56415],FRMD4A->FERM_domain_containing_4A,chr10:13685706-14504141:-,FAM107B->chr10:14560556-14816896:-,family_with_sequence_similarity_107_member_B	ISTMES1_PLEURA	0.04	0.14	0.0778	TRUE	0	1	0	3	1	FALSE	ACH-000569
ISTMES1_PLEURA	RP3-400B16.4--LAMC2	3	2	RP3-400B16.4	1123	chr6:4135779:+	LAMC2	23315	chr1:183206487:+	ONLY_REF_SPLICE	YES	0	24	1	0.17	0.0389	0.026	RP3-400B16.4->chr6:4135657-4146287:+,LAMC2->chr1:183155373-183214035:+,laminin_subunit_gamma_2	ISTMES1_PLEURA	0.17	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	MB21D2--FGF12	3	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0389	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	ISTMES1_PLEURA	1	1	0.0389	FALSE	0	17	0	46	0	FALSE	ACH-000569
ISTMES1_PLEURA	RP3-400B16.4--LAMC2	2	3	RP3-400B16.4	1123	chr6:4135779:+	LAMC2	22423	chr1:183205595:+	ONLY_REF_SPLICE	NO	0	14	1	0.26	0.026	0.0389	RP3-400B16.4->chr6:4135657-4146287:+,LAMC2->chr1:183155373-183214035:+,laminin_subunit_gamma_2	ISTMES1_PLEURA	0.26	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.026	0.026	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ISTMES1_PLEURA	0.67	1	0.052	FALSE	515	4851	409	746	0	FALSE	ACH-000569
ISTMES1_PLEURA	RP4-568F9.6--LINC00851	2	1	RP4-568F9.6	7120	chr20:18304288:-	LINC00851	12241	chr20:18361423:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.026	0.013	LOCAL_INVERSION:-:+:[19749],RP4-568F9.6->chr20:18303196-18339944:-,LINC00851->chr20:18359693-18362128:+,long_intergenic_non-protein_coding_RNA_851	ISTMES1_PLEURA	0.75	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	SAMD5--SASH1	2	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.026	0.013	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	ISTMES1_PLEURA	0.75	1	0.039	TRUE	53	396	64	110	0	FALSE	ACH-000569
ISTMES1_PLEURA	CPSF6--ZBTB21	2	0	CPSF6	11046	chr12:69656342:+	ZBTB21	26884	chr21:43411998:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,ZBTB21->chr21:43406940-43430496:-,zinc_finger_and_BTB_domain_containing_21	ISTMES1_PLEURA	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	ISTMES1_PLEURA	1	1	0.026	TRUE	347	1186	183	220	0	FALSE	ACH-000569
ISTMES1_PLEURA	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	ISTMES1_PLEURA	1	1	0.026	TRUE	15	36	8	26	0	FALSE	ACH-000569
ISTMES1_PLEURA	EZR--C6orf99	2	0	EZR	2248	chr6:159239114:-	C6orf99	20886	chr6:159316253:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_INVERSION:-:+:[50527],EZR->chr6:159186773-159240444:-,ezrin,C6orf99->chr6:159290971-159331385:+,chromosome_6_open_reading_frame_99	ISTMES1_PLEURA	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	RFC5--UBR7	2	0	RFC5	2277	chr12:118454697:+	UBR7	24819	chr14:93685558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RFC5->chr12:118451393-118470935:+,replication_factor_C_subunit_5,UBR7->chr14:93673401-93695561:+,ubiquitin_protein_ligase_E3_component_n-recognin_7_(putative)	ISTMES1_PLEURA	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.013	0.0519	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ISTMES1_PLEURA	0.71	1	0.0649	FALSE	407	2205	196	549	0	FALSE	ACH-000569
ISTMES1_PLEURA	RPL30--ZBTB18	2	0	RPL30	2527	chr8:99057171:-	ZBTB18	11802	chr1:244217090:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,ZBTB18->chr1:244214585-244220778:+,zinc_finger_and_BTB_domain_containing_18	ISTMES1_PLEURA	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	UBA2--UQCRC1	2	0	UBA2	1219	chr19:34919475:+	UQCRC1	25991	chr3:48643289:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	UBA2->chr19:34919257-34960853:+,ubiquitin_like_modifier_activating_enzyme_2,UQCRC1->chr3:48636435-48648409:-,ubiquinol-cytochrome_c_reductase_core_protein_I	ISTMES1_PLEURA	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000569
ISTMES1_PLEURA	PRKD1--CTD-2251F13.1	1	2	PRKD1	1600	chr14:30660505:-	CTD-2251F13.1	38031	chr14:30449473:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.013	0.026	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,CTD-2251F13.1->chr14:30421603-30766249:-	ISTMES1_PLEURA	1	1	0.039	TRUE	0	1	0	5	1	TRUE	ACH-000569
ISTMES1_PLEURA	AC009133.20--SF3B1	1	1	AC009133.20	1827	chr16:29830861:-	SF3B1	20331	chr2:198266854:-	ONLY_REF_SPLICE	YES	3	632	0.4	0	0.013	0.013	AC009133.20->chr16:29820250-29831687:-,SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1	ISTMES1_PLEURA	0	0.4	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000569
ISTMES1_PLEURA	AP3D1--CDK10	1	1	AP3D1	25116	chr19:2108686:-	CDK10	35305	chr16:89755660:+	ONLY_REF_SPLICE	YES	570	88	0	0.02	0.013	0.013	AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,CDK10->chr16:89747145-89762772:+,cyclin-dependent_kinase_10	ISTMES1_PLEURA	0	0.02	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000569
ISTMES1_PLEURA	C14orf37--PSMA3	1	1	C14orf37	2258	chr14:58758353:-	PSMA3	24451	chr14:58718837:+	ONLY_REF_SPLICE	YES	0	1194	1	0	0.013	0.013	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	ISTMES1_PLEURA	0	1	0.026	FALSE	1	3	0	9	0	FALSE	ACH-000569
ISTMES1_PLEURA	CDH13--RP11-22H5.2	1	1	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	162	0	0.01	1	0.013	0.013	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	ISTMES1_PLEURA	0.01	1	0.026	FALSE	14	31	0	36	0	FALSE	ACH-000569
ISTMES1_PLEURA	CEP170--ZBTB18	1	1	CEP170	1309	chr1:243418342:-	ZBTB18	37624	chr1:244217090:+	ONLY_REF_SPLICE	YES	244	2	0.01	0.5	0.013	0.013	CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,ZBTB18->chr1:244214585-244220778:+,zinc_finger_and_BTB_domain_containing_18	ISTMES1_PLEURA	0.01	0.5	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000569
ISTMES1_PLEURA	CMC2--CDYL2	1	1	CMC2	2457	chr16:81040339:-	CDYL2	19859	chr16:80719026:-	ONLY_REF_SPLICE	YES	513	0	0	1	0.013	0.013	CMC2->C-x9-C_motif_containing_2,chr16:81009698-81053875:-,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	ISTMES1_PLEURA	0	1	0.026	FALSE	0	0	0	5	0	FALSE	ACH-000569
ISTMES1_PLEURA	FCHO1--GNA11	1	1	FCHO1	12006	chr19:17881705:+	GNA11	30307	chr19:3110147:+	ONLY_REF_SPLICE	YES	6	374	0.25	0.01	0.013	0.013	FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+,GNA11->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_11,Oncogene{Bushman},OncomapV4_panel,chr19:3094408-3124002:+	ISTMES1_PLEURA	0.01	0.25	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000569
ISTMES1_PLEURA	FRMD4A--PTK2	1	1	FRMD4A	4125	chr10:14372057:-	PTK2	53921	chr8:141935848:-	ONLY_REF_SPLICE	YES	133	490	0.01	0	0.013	0.013	FRMD4A->FERM_domain_containing_4A,chr10:13685706-14504141:-,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	ISTMES1_PLEURA	0	0.01	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000569
ISTMES1_PLEURA	HIF1A-AS2--HIF1A	1	1	HIF1A-AS2	1213	chr14:62217603:-	HIF1A	11316	chr14:62188227:+	ONLY_REF_SPLICE	YES	3	407	0.4	0	0.013	0.013	NEIGHBORS_OVERLAP:-:+:[32700],HIF1A-AS2->HIF1A_antisense_RNA_2,chr14:62182276-62217815:-,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	ISTMES1_PLEURA	0	0.4	0.026	FALSE	0	1	0	3	0	FALSE	ACH-000569
ISTMES1_PLEURA	LRRC42--VPS35	1	1	LRRC42	2507	chr1:54413494:+	VPS35	26267	chr16:46702964:-	ONLY_REF_SPLICE	YES	280	377	0.01	0.01	0.013	0.013	LRRC42->chr1:54411750-54433841:+,leucine_rich_repeat_containing_42,VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-	ISTMES1_PLEURA	0.01	0.01	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000569
ISTMES1_PLEURA	PRR16--CTD-2334D19.1	1	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	NO	9	0	0.18	1	0.013	0.013	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	ISTMES1_PLEURA	0.18	1	0.026	FALSE	56	216	12	147	0	FALSE	ACH-000569
ISTMES1_PLEURA	RPL23A--TMEM11	1	1	RPL23A	2498	chr17:27047908:+	TMEM11	13424	chr17:21102153:-	ONLY_REF_SPLICE	YES	3771	114	0	0.02	0.013	0.013	RPL23A->chr17:27046411-27051377:+,ribosomal_protein_L23a,TMEM11->chr17:21100593-21117937:-,transmembrane_protein_11	ISTMES1_PLEURA	0	0.02	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000569
ISTMES1_PLEURA	SCN8A--ACAP2	1	1	SCN8A	12369	chr12:52099407:+	ACAP2	51466	chr3:195066046:-	ONLY_REF_SPLICE	YES	22	58	0.08	0.03	0.013	0.013	SCN8A->chr12:51984050-52206648:+,sodium_voltage-gated_channel_alpha_subunit_8,ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-	ISTMES1_PLEURA	0.03	0.08	0.026	TRUE	0	0	0	1	0	FALSE	ACH-000569
ISTMES1_PLEURA	TEAD1--PARVA	1	1	TEAD1	2140	chr11:12697108:+	PARVA	32787	chr11:12495292:+	ONLY_REF_SPLICE	NO	95	584	0.02	0	0.013	0.013	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	ISTMES1_PLEURA	0	0.02	0.026	FALSE	0	2	0	5	2	FALSE	ACH-000569
ISTMES1_PLEURA	TTC17--API5	1	1	TTC17	1182	chr11:43380663:+	API5	38679	chr11:43340190:+	ONLY_REF_SPLICE	YES	258	337	0.01	0.01	0.013	0.013	LOCAL_REARRANGEMENT:+:[14403],TTC17->chr11:43380482-43516483:+,tetratricopeptide_repeat_domain_17,API5->apoptosis_inhibitor_5,chr11:43333513-43366079:+	ISTMES1_PLEURA	0.01	0.01	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000569
ISTMES1_PLEURA	VEGFC--NEIL3	1	1	VEGFC	3968	chr4:177648932:-	NEIL3	13998	chr4:178243613:+	ONLY_REF_SPLICE	NO	167	165	0.01	0.01	0.013	0.013	VEGFC->chr4:177604689-177713881:-,vascular_endothelial_growth_factor_C,NEIL3->chr4:178230990-178284097:+,nei_like_DNA_glycosylase_3	ISTMES1_PLEURA	0.01	0.01	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000569
TM87_SOFT_TISSUE	MT-TA--MT-TN	98	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.126	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TM87_SOFT_TISSUE	1	1	1.126	FALSE	369	2501	205	193	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	TIMM23B--LINC00843	75	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8617	0.3332	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TM87_SOFT_TISSUE	0.99	1	1.1949	TRUE	508	994	45	981	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	MT-TA--MT-TC	58	13	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6664	0.1494	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TM87_SOFT_TISSUE	1	1	0.8158	FALSE	462	80	0	856	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	TIMM23--RP11-464F9.1	41	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	378	3	0.11	0.94	0.4711	0.0574	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TM87_SOFT_TISSUE	0.11	0.94	0.5285	TRUE	519	3926	326	965	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	RP11-820L6.1--RP11-166D19.1	31	26	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	0	13	1	0.81	0.3562	0.2987	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	TM87_SOFT_TISSUE	0.81	1	0.6549	FALSE	65	26	15	9	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	SESN3--MAML2	26	21	SESN3	8358	chr11:94922943:-	MAML2	29589	chr11:95826681:-	ONLY_REF_SPLICE	YES	255	37	0.16	0.56	0.2987	0.2413	SESN3->chr11:94898704-94965705:-,sestrin_3,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	TM87_SOFT_TISSUE	0.16	0.56	0.54	TRUE	0	0	0	1	0	TRUE	ACH-000172
TM87_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	16	36	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	16	33	0.76	0.61	0.1838	0.4136	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TM87_SOFT_TISSUE	0.61	0.76	0.5974	FALSE	515	4851	409	746	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	PLXDC1--TAF13	24	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2757	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	TM87_SOFT_TISSUE	1	1	0.2757	TRUE	7	10	0	216	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	TMSB10--SHC1	24	0	TMSB10	1865	chr2:85133613:+	SHC1	11279	chr1:154938943:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2757	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,SHC1->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_transforming_protein_1,chr1:154934774-154946871:-	TM87_SOFT_TISSUE	1	1	0.2757	TRUE	0	0	0	1	0	TRUE	ACH-000172
TM87_SOFT_TISSUE	MT-TA--MT-TN	14	39	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1609	0.4481	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TM87_SOFT_TISSUE	1	1	0.609	FALSE	369	2501	205	193	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	13	42	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	15	33	0.79	0.62	0.1494	0.4826	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TM87_SOFT_TISSUE	0.62	0.79	0.632	FALSE	467	2173	244	435	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	MT-TA--MT-TN	11	48	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1264	0.5515	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TM87_SOFT_TISSUE	1	1	0.6779	FALSE	369	2501	205	193	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	ZNF654--HMGB2	22	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2528	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TM87_SOFT_TISSUE	1	1	0.2528	TRUE	0	0	0	518	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	MT-TA--MT-TN	21	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2413	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TM87_SOFT_TISSUE	1	1	0.2413	FALSE	369	2501	205	193	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	7	54	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	15	0	0.8	1	0.0804	0.6204	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TM87_SOFT_TISSUE	0.8	1	0.7008	FALSE	192	492	57	212	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	7	46	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	16	0	0.77	1	0.0804	0.5285	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TM87_SOFT_TISSUE	0.77	1	0.6089	FALSE	407	2205	196	549	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	MT-ND6--MT-TE	13	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.1494	0.1264	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TM87_SOFT_TISSUE	0.92	1	0.2758	FALSE	499	1288	110	792	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	MT-ND6--MT-TE	13	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1494	0.0689	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TM87_SOFT_TISSUE	1	1	0.2183	FALSE	499	1288	110	792	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	MT-ND6--MT-TE	13	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1494	0.0689	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TM87_SOFT_TISSUE	1	1	0.2183	FALSE	499	1288	110	792	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	RP11-680G10.1--GSE1	14	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	4	1	0.79	0.1609	0.0115	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TM87_SOFT_TISSUE	0.79	1	0.1724	TRUE	458	1351	185	561	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	PLEKHG1--MTHFD1L	11	8	PLEKHG1	15143	chr6:151140910:+	MTHFD1L	38926	chr6:151239713:+	ONLY_REF_SPLICE	YES	74	520	0.2	0.04	0.1264	0.0919	NEIGHBORS[21886],PLEKHG1->chr6:150920999-151164799:+,pleckstrin_homology_and_RhoGEF_domain_containing_G1,MTHFD1L->chr6:151186685-151423023:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_1-like	TM87_SOFT_TISSUE	0.04	0.2	0.2183	FALSE	0	0	0	1	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	PLXDC1--TAF13	13	0	PLXDC1	27476	chr17:37222884:-	TAF13	38494	chr1:109605673:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1494	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	TM87_SOFT_TISSUE	1	1	0.1494	TRUE	7	10	0	216	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	1	47	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	16	0	0.75	1	0.0115	0.54	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TM87_SOFT_TISSUE	0.75	1	0.5515	FALSE	275	511	55	178	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	MT-TA--MT-TN	5	28	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0.3217	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TM87_SOFT_TISSUE	1	1	0.3791	FALSE	369	2501	205	193	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	MT-ND6--MT-TE	3	29	MT-ND6	1389	chrM:14285:-	MT-TE	4514	chrM:14754:-	INCL_NON_REF_SPLICE	YES	9	0	0.78	1	0.0345	0.3332	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TM87_SOFT_TISSUE	0.78	1	0.3677	FALSE	499	1288	110	792	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	MT-TA--MT-TC	7	12	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0804	0.1379	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TM87_SOFT_TISSUE	1	1	0.2183	FALSE	462	80	0	856	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	MT-ND6--MT-TE	7	9	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0804	0.1034	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TM87_SOFT_TISSUE	1	1	0.1838	FALSE	499	1288	110	792	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	MT-TA--MT-TN	7	9	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0804	0.1034	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TM87_SOFT_TISSUE	1	1	0.1838	FALSE	369	2501	205	193	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	MT-TA--MT-TN	9	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1034	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TM87_SOFT_TISSUE	1	1	0.1034	FALSE	369	2501	205	193	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	RP11-680G10.1--GSE1	9	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1034	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TM87_SOFT_TISSUE	1	1	0.1034	TRUE	465	1949	224	605	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	ANXA1--MT-ND5	8	3	ANXA1	9359	chr9:75780086:+	MT-ND5	17331	chrM:12389:+	INCL_NON_REF_SPLICE	YES	18723	0	0	1	0.0919	0.0345	ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	TM87_SOFT_TISSUE	0	1	0.1264	FALSE	0	0	0	2	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	MT-TA--MT-TC	5	14	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0.1609	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TM87_SOFT_TISSUE	1	1	0.2183	FALSE	462	80	0	856	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	RP1-34H18.1--NAV3	8	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	26	1	0.28	0.0919	0.023	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	TM87_SOFT_TISSUE	0.28	1	0.1149	TRUE	254	575	65	124	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	MT-ND6--MT-TE	6	9	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0.1034	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TM87_SOFT_TISSUE	1	1	0.1723	FALSE	499	1288	110	792	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	RP11-820L6.1--RP11-166D19.1	2	24	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	0	27	1	0.49	0.023	0.2757	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	TM87_SOFT_TISSUE	0.49	1	0.2987	FALSE	65	26	15	9	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	MT-ND6--MT-TE	3	19	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0345	0.2183	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TM87_SOFT_TISSUE	0.92	1	0.2528	FALSE	499	1288	110	792	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	C15orf57--CBX3	6	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	108	45	0.1	0.21	0.0689	0.0689	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TM87_SOFT_TISSUE	0.1	0.21	0.1378	TRUE	267	562	48	632	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	RP11-820L6.1--RP11-166D19.1	5	9	RP11-820L6.1	6183	chr11:122162992:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	26	27	0.35	0.34	0.0574	0.1034	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	TM87_SOFT_TISSUE	0.34	0.35	0.1608	FALSE	43	23	12	6	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	KIF26B--SMYD3	7	0	KIF26B	2699	chr1:245319985:+	SMYD3	55692	chr1:246093239:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0804	0	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	TM87_SOFT_TISSUE	1	1	0.0804	TRUE	0	18	0	6	12	TRUE	ACH-000172
TM87_SOFT_TISSUE	RP11-820L6.1--RP11-166D19.1	2	20	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	NO	0	27	1	0.45	0.023	0.2298	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	TM87_SOFT_TISSUE	0.45	1	0.2528	FALSE	40	10	5	8	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	RP11-820L6.1--RP11-166D19.1	4	11	RP11-820L6.1	6183	chr11:122162992:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	26	13	0.37	0.54	0.046	0.1264	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	TM87_SOFT_TISSUE	0.37	0.54	0.1724	FALSE	43	23	12	6	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	RP11-820L6.1--RP11-166D19.1	1	22	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	0	13	1	0.64	0.0115	0.2528	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	TM87_SOFT_TISSUE	0.64	1	0.2643	FALSE	40	10	5	8	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	RP11-166D19.1--DNM3OS	6	1	RP11-166D19.1	5868	chr11:121971082:-	DNM3OS	18442	chr1:172113577:-	ONLY_REF_SPLICE	YES	10	174	0.41	0.04	0.0689	0.0115	GTEx_FI:{Ovary=[count:4=pct:7.5],Blood_Vessel=[count:3=pct:0.8],Thyroid=[count:2=pct:1.1],Uterus=[count:1=pct:2.3],Esophagus=[count:1=pct:0.2]},RP11-166D19.1->chr11:121899063-121987031:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	TM87_SOFT_TISSUE	0.04	0.41	0.0804	TRUE	11	20	1	11	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TM87_SOFT_TISSUE	1	1	0.0574	FALSE	0	0	0	189	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	ARF3--PRKAG1	4	2	ARF3	6942	chr12:49333438:-	PRKAG1	17466	chr12:49406893:-	ONLY_REF_SPLICE	YES	512	10	0.01	0.38	0.046	0.023	LOCAL_REARRANGEMENT:-:[44723],ARF3->ADP_ribosylation_factor_3,chr12:49329506-49351334:-,PRKAG1->chr12:49396057-49412980:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_1	TM87_SOFT_TISSUE	0.01	0.38	0.069	FALSE	0	0	0	1	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	MT-TA--MT-TC	4	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0.023	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TM87_SOFT_TISSUE	1	1	0.069	FALSE	462	80	0	856	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TM87_SOFT_TISSUE	1	1	0.046	FALSE	369	2501	205	193	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	OTUD5--MT-ND4L	4	0	OTUD5	9682	chrX:48780079:-	MT-ND4L	13458	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	OTUD5->OTU_deubiquitinase_5,chrX:48779305-48815648:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TM87_SOFT_TISSUE	1	1	0.046	FALSE	0	0	0	6	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	PLEKHG1--MTHFD1L	3	1	PLEKHG1	8053	chr6:151107595:+	MTHFD1L	62075	chr6:151413603:+	ONLY_REF_SPLICE	YES	95	424	0.04	0.01	0.0345	0.0115	NEIGHBORS[21886],PLEKHG1->chr6:150920999-151164799:+,pleckstrin_homology_and_RhoGEF_domain_containing_G1,MTHFD1L->chr6:151186685-151423023:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_1-like	TM87_SOFT_TISSUE	0.01	0.04	0.046	FALSE	0	0	0	1	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	PLEKHG1--MTHFD1L	1	8	PLEKHG1	17205	chr6:151144812:+	MTHFD1L	36533	chr6:151226786:+	ONLY_REF_SPLICE	NO	79	410	0.1	0.02	0.0115	0.0919	NEIGHBORS[21886],PLEKHG1->chr6:150920999-151164799:+,pleckstrin_homology_and_RhoGEF_domain_containing_G1,MTHFD1L->chr6:151186685-151423023:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_1-like	TM87_SOFT_TISSUE	0.02	0.1	0.1034	FALSE	0	0	0	1	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	CUBN--RSU1	2	2	CUBN	66173	chr10:16911635:-	RSU1	87521	chr10:16635495:-	ONLY_REF_SPLICE	YES	371	1086	0.01	0	0.023	0.023	NEIGHBORS[6436],CUBN->Oncogene{Bushman},chr10:16865963-17171830:-,cubilin,RSU1->Ras_suppressor_protein_1,chr10:16632610-16859527:-	TM87_SOFT_TISSUE	0	0.01	0.046	FALSE	0	0	0	1	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	DLGAP1-AS1--RP13-270P17.2	2	2	DLGAP1-AS1	1753	chr18:3594482:+	RP13-270P17.2	10880	chr18:3236439:+	ONLY_REF_SPLICE	YES	43	1	0.09	0.8	0.023	0.023	DLGAP1-AS1->DLGAP1_antisense_RNA_1,chr18:3593730-3598350:+,RP13-270P17.2->chr18:3190395-3247275:+	TM87_SOFT_TISSUE	0.09	0.8	0.046	TRUE	0	0	0	1	0	TRUE	ACH-000172
TM87_SOFT_TISSUE	RP1-34H18.1--RP11-781A6.1	2	2	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0.023	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	TM87_SOFT_TISSUE	1	1	0.046	TRUE	94	160	11	37	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	CSRNP3--SCN2A	1	5	CSRNP3	3353	chr2:166374471:+	SCN2A	27910	chr2:166152283:+	ONLY_REF_SPLICE	YES	3	75	0.67	0.07	0.0115	0.0574	LOCAL_REARRANGEMENT:+:[77339],CSRNP3->chr2:166326157-166545917:+,cysteine_and_serine_rich_nuclear_protein_3,SCN2A->chr2:166095912-166248818:+,sodium_voltage-gated_channel_alpha_subunit_2	TM87_SOFT_TISSUE	0.07	0.67	0.0689	TRUE	0	0	0	1	0	TRUE	ACH-000172
TM87_SOFT_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.023	0.0115	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TM87_SOFT_TISSUE	0.75	1	0.0345	FALSE	292	1546	117	613	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	PLEKHG1--MTHFD1L	2	1	PLEKHG1	17205	chr6:151144812:+	MTHFD1L	55384	chr6:151336016:+	ONLY_REF_SPLICE	YES	79	505	0.04	0.01	0.023	0.0115	NEIGHBORS[21886],PLEKHG1->chr6:150920999-151164799:+,pleckstrin_homology_and_RhoGEF_domain_containing_G1,MTHFD1L->chr6:151186685-151423023:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_1-like	TM87_SOFT_TISSUE	0.01	0.04	0.0345	FALSE	0	0	0	1	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	APOD--ULK2	2	0	APOD	4868	chr3:195303933:-	ULK2	23855	chr17:19741896:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	APOD->apolipoprotein_D,chr3:195295573-195311076:-,ULK2->chr17:19674142-19771249:-,unc-51_like_autophagy_activating_kinase_2	TM87_SOFT_TISSUE	1	1	0.023	TRUE	0	4	0	1	3	TRUE	ACH-000172
TM87_SOFT_TISSUE	DLGAP1-AS1--RP13-270P17.2	2	0	DLGAP1-AS1	1509	chr18:3594238:+	RP13-270P17.2	10880	chr18:3236439:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	DLGAP1-AS1->DLGAP1_antisense_RNA_1,chr18:3593730-3598350:+,RP13-270P17.2->chr18:3190395-3247275:+	TM87_SOFT_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000172
TM87_SOFT_TISSUE	KIF26B--SMYD3	2	0	KIF26B	2699	chr1:245319985:+	SMYD3	57863	chr1:246078942:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	TM87_SOFT_TISSUE	1	1	0.023	TRUE	0	1	0	1	0	TRUE	ACH-000172
TM87_SOFT_TISSUE	LETMD1--SPINK13	2	0	LETMD1	2224	chr12:51442968:+	SPINK13	17085	chr5:147653910:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	LETMD1->LETM1_domain_containing_1,chr12:51441745-51454207:+,SPINK13->chr5:147647743-147665817:+,serine_peptidase_inhibitor,_Kazal_type_13_(putative)	TM87_SOFT_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000172
TM87_SOFT_TISSUE	LINC01036--LINC01037	2	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	TM87_SOFT_TISSUE	1	1	0.023	FALSE	0	24	0	62	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	PJA2--FGF20	2	0	PJA2	1153	chr5:108745543:-	FGF20	21680	chr8:16850826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	PJA2->chr5:108670410-108745695:-,praja_ring_finger_ubiquitin_ligase_2,FGF20->chr8:16849678-16859690:-,fibroblast_growth_factor_20	TM87_SOFT_TISSUE	1	1	0.023	TRUE	0	0	0	1	0	TRUE	ACH-000172
TM87_SOFT_TISSUE	TRPC4--POSTN	2	0	TRPC4	1831	chr13:38443732:-	POSTN	21765	chr13:38162123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.023	0	NEIGHBORS[37792],TRPC4->chr13:38210773-38444562:-,transient_receptor_potential_cation_channel_subfamily_C_member_4,POSTN->chr13:38136720-38172981:-,periostin	TM87_SOFT_TISSUE	1	1	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	RP13-188A5.1--KLF8	1	3	RP13-188A5.1	1678	chrX:55935233:+	KLF8	6745	chrX:56259591:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0115	0.0345	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	TM87_SOFT_TISSUE	0.67	1	0.046	TRUE	3	12	3	6	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	RPSAP52--HMGA2	1	3	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	7	2794	0.36	0	0.0115	0.0345	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	TM87_SOFT_TISSUE	0	0.36	0.046	FALSE	0	59	0	125	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	DLGAP1-AS1--RP13-270P17.2	1	2	DLGAP1-AS1	2850	chr18:3596673:+	RP13-270P17.2	10880	chr18:3236439:+	ONLY_REF_SPLICE	YES	57	1	0.05	0.75	0.0115	0.023	DLGAP1-AS1->DLGAP1_antisense_RNA_1,chr18:3593730-3598350:+,RP13-270P17.2->chr18:3190395-3247275:+	TM87_SOFT_TISSUE	0.05	0.75	0.0345	TRUE	0	0	0	1	0	TRUE	ACH-000172
TM87_SOFT_TISSUE	COL3A1--HADHB	1	1	COL3A1	22166	chr2:189870183:+	HADHB	42114	chr2:26499941:+	ONLY_REF_SPLICE	NO	10585	1197	0	0	0.0115	0.0115	COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,HADHB->chr2:26466038-26513336:+,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_beta_subunit	TM87_SOFT_TISSUE	0	0	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	LINC00478--MRPS6	1	1	LINC00478	5289	chr21:17603435:+	MRPS6	31741	chr21:35497641:+	ONLY_REF_SPLICE	YES	26	771	0.07	0	0.0115	0.0115	LINC00478->chr21:17442842-17999716:+,MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6	TM87_SOFT_TISSUE	0	0.07	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	OLFML2B--ATF6	1	1	OLFML2B	7901	chr1:161967615:-	ATF6	30709	chr1:161882086:+	ONLY_REF_SPLICE	YES	3048	1164	0	0	0.0115	0.0115	LOCAL_INVERSION:-:+:[19122],OLFML2B->chr1:161952982-161993644:-,olfactomedin_like_2B,ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+	TM87_SOFT_TISSUE	0	0	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	RP1-34H18.1--NAV3	1	1	RP1-34H18.1	1574	chr12:77718994:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	4	26	0.33	0.07	0.0115	0.0115	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	TM87_SOFT_TISSUE	0.07	0.33	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	RP11-96H19.1--SLC38A4	1	1	RP11-96H19.1	2709	chr12:46781755:+	SLC38A4	12416	chr12:47186966:-	ONLY_REF_SPLICE	YES	16	18	0.11	0.1	0.0115	0.0115	RP11-96H19.1->chr12:46777462-46850051:+,SLC38A4->chr12:47158546-47226191:-,solute_carrier_family_38_member_4	TM87_SOFT_TISSUE	0.1	0.11	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	SCN3A--ANXA1	1	1	SCN3A	13958	chr2:166003249:-	ANXA1	44258	chr9:75773438:+	ONLY_REF_SPLICE	NO	333	373	0.01	0.01	0.0115	0.0115	SCN3A->chr2:165944032-166060577:-,sodium_voltage-gated_channel_alpha_subunit_3,ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+	TM87_SOFT_TISSUE	0.01	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	TIMM23B--LINC00843	1	1	TIMM23B	5839	chr10:51384357:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	68	0	0.03	1	0.0115	0.0115	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TM87_SOFT_TISSUE	0.03	1	0.023	TRUE	1	0	0	2	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	TMCO6--SEMA4G	1	1	TMCO6	1425	chr5:140019436:+	SEMA4G	18107	chr10:102743062:+	ONLY_REF_SPLICE	NO	68	63	0.03	0.03	0.0115	0.0115	TMCO6->chr5:140019012-140024993:+,transmembrane_and_coiled-coil_domains_6,SEMA4G->chr10:102729275-102745628:+,semaphorin_4G	TM87_SOFT_TISSUE	0.03	0.03	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000172
TM87_SOFT_TISSUE	TRIM5--WHSC1L1	1	1	TRIM5	7090	chr11:5706098:-	WHSC1L1	24073	chr8:38205733:-	ONLY_REF_SPLICE	YES	88	45	0.02	0.04	0.0115	0.0115	TRIM5->chr11:5684425-5959849:-,tripartite_motif_containing_5,WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-	TM87_SOFT_TISSUE	0.02	0.04	0.023	TRUE	0	0	0	1	0	FALSE	ACH-000172
HCC1569_BREAST	BOP1--LMF1	734	132	BOP1	4671	chr8:145500212:-	LMF1	27943	chr16:929737:-	ONLY_REF_SPLICE	YES	331	34	0.72	0.96	7.7934	1.4015	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,LMF1->Oncogene{Bushman},chr16:903634-1031318:-,lipase_maturation_factor_1	HCC1569_BREAST	0.72	0.96	9.1949	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PSD3--CSGALNACT1	341	39	PSD3	3423	chr8:18871073:-	CSGALNACT1	65438	chr8:19276261:-	ONLY_REF_SPLICE	YES	2	2	0.99	0.99	3.6206	0.4141	{Klijn_CCL:Breast=1},PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,CSGALNACT1->chondroitin_sulfate_N-acetylgalactosaminyltransferase_1,chr8:19261672-19615540:-	HCC1569_BREAST	0.99	0.99	4.0347	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PVT1--CASC8	276	195	PVT1	1202	chr8:128806980:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	140	14	0.77	0.97	2.9305	2.0705	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.77	0.97	5.001	TRUE	0	2	0	5	2	TRUE	ACH-000930
HCC1569_BREAST	TMEM189--GMDS	175	46	TMEM189	3506	chr20:48760039:-	GMDS	35335	chr6:1624775:-	ONLY_REF_SPLICE	YES	182	68	0.55	0.76	1.8581	0.4884	TMEM189->chr20:48697663-48770335:-,transmembrane_protein_189,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	HCC1569_BREAST	0.55	0.76	2.3465	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PVT1--CASC8	120	237	PVT1	1202	chr8:128806980:+	CASC8	35426	chr8:128335399:-	ONLY_REF_SPLICE	YES	140	0	0.72	1	1.2741	2.5164	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.72	1	3.7905	TRUE	0	0	0	5	0	TRUE	ACH-000930
HCC1569_BREAST	AP5B1--CASC8	163	30	AP5B1	1361	chr11:65547913:-	CASC8	17025	chr8:128302305:-	ONLY_REF_SPLICE	YES	18	14	0.91	0.93	1.7307	0.3185	AP5B1->adaptor_related_protein_complex_5_beta_1_subunit,chr11:65543364-65548273:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.91	0.93	2.0492	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	CALR--PPP1R1B	162	2	CALR	4981	chr19:13054697:+	PPP1R1B	15156	chr17:37790270:+	INCL_NON_REF_SPLICE	YES	1851	4458	0.08	0.04	1.7201	0.0212	CALR->calreticulin,chr19:13049392-13055303:+,PPP1R1B->Oncogene{Bushman},chr17:37782993-37792879:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1B	HCC1569_BREAST	0.04	0.08	1.7413	TRUE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	LIMCH1--UCHL1	138	60	LIMCH1	7853	chr4:41526495:+	UCHL1	52640	chr4:41258610:+	ONLY_REF_SPLICE	YES	41	0	0.83	1	1.4652	0.6371	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[91152],LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,UCHL1->chr4:41258430-41270472:+,ubiquitin_C-terminal_hydrolase_L1	HCC1569_BREAST	0.83	1	2.1023	TRUE	0	2	0	1	2	TRUE	ACH-000930
HCC1569_BREAST	MT-TA--MT-TN	110	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.168	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1569_BREAST	1	1	1.168	FALSE	369	2501	205	193	0	FALSE	ACH-000930
HCC1569_BREAST	PVT1--CASC8	56	207	PVT1	2457	chr8:128808254:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	117	14	0.69	0.95	0.5946	2.1979	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.69	0.95	2.7925	TRUE	0	1	0	4	0	TRUE	ACH-000930
HCC1569_BREAST	BAG4--ASH2L	78	31	BAG4	2715	chr8:38050313:+	ASH2L	15185	chr8:37967897:+	ONLY_REF_SPLICE	YES	47	153	0.7	0.42	0.8282	0.3291	LOCAL_REARRANGEMENT:+:[32457],BAG4->BCL2_associated_athanogene_4,chr8:38034051-38070819:+,ASH2L->ash2_(absent,_small,_or_homeotic)-like_(Drosophila),chr8:37962760-38001594:+	HCC1569_BREAST	0.42	0.7	1.1573	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	AP003900.6--CRBN	70	14	AP003900.6	1122	chr21:11169841:+	CRBN	9018	chr3:3216953:-	ONLY_REF_SPLICE	YES	0	1	1	0.99	0.7432	0.1486	AP003900.6->chr21:11169720-11184046:+,CRBN->cereblon,chr3:3190676-3221394:-	HCC1569_BREAST	0.99	1	0.8918	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PVT1--CASC8	8	252	PVT1	2457	chr8:128808254:+	CASC8	35426	chr8:128335399:-	ONLY_REF_SPLICE	YES	117	0	0.69	1	0.0849	2.6757	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.69	1	2.7606	TRUE	0	0	0	2	0	TRUE	ACH-000930
HCC1569_BREAST	PVT1--CASC8	2	256	PVT1	2520	chr8:128808317:+	CASC8	35426	chr8:128335399:-	ONLY_REF_SPLICE	YES	119	0	0.68	1	0.0212	2.7181	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.68	1	2.7393	TRUE	0	0	0	2	0	TRUE	ACH-000930
HCC1569_BREAST	PVT1--CASC8	1	256	PVT1	6412	chr8:128867041:+	CASC8	35426	chr8:128335399:-	ONLY_REF_SPLICE	YES	116	0	0.69	1	0.0106	2.7181	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.69	1	2.7287	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PVT1--CASC8	11	211	PVT1	2520	chr8:128808317:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	119	14	0.65	0.94	0.1168	2.2403	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.65	0.94	2.3571	TRUE	0	1	0	4	0	TRUE	ACH-000930
HCC1569_BREAST	TIMM23B--LINC00843	57	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.6052	0.138	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1569_BREAST	0.99	1	0.7432	TRUE	508	994	45	981	0	FALSE	ACH-000930
HCC1569_BREAST	PVT1--CASC8	3	211	PVT1	6936	chr8:128867565:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	114	14	0.65	0.94	0.0319	2.2403	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.65	0.94	2.2722	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PSD3--CSGALNACT1	46	20	PSD3	3423	chr8:18871073:-	CSGALNACT1	66533	chr8:19266205:-	ONLY_REF_SPLICE	YES	2	32	0.97	0.67	0.4884	0.2124	{Klijn_CCL:Breast=1},PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,CSGALNACT1->chondroitin_sulfate_N-acetylgalactosaminyltransferase_1,chr8:19261672-19615540:-	HCC1569_BREAST	0.67	0.97	0.7008	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	SIPA1L3--TFCP2	42	20	SIPA1L3	1131	chr19:38397998:+	TFCP2	41142	chr12:51512555:-	ONLY_REF_SPLICE	YES	8	41	0.89	0.6	0.4459	0.2124	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,TFCP2->chr12:51487446-51566926:-,transcription_factor_CP2	HCC1569_BREAST	0.6	0.89	0.6583	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	MT-TA--MT-TC	43	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4566	0.0531	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1569_BREAST	1	1	0.5097	FALSE	462	80	0	856	0	FALSE	ACH-000930
HCC1569_BREAST	DPY19L4--IL1RN	41	4	DPY19L4	18815	chr8:95796030:+	IL1RN	29238	chr2:113868693:+	ONLY_REF_SPLICE	YES	59	0	0.43	1	0.4353	0.0425	DPY19L4->chr8:95731931-95806064:+,dpy-19_like_4_(C._elegans),IL1RN->chr2:113864791-113891593:+,interleukin_1_receptor_antagonist	HCC1569_BREAST	0.43	1	0.4778	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	BAG4--ASH2L	35	13	BAG4	1607	chr8:38034657:+	ASH2L	15185	chr8:37967897:+	ONLY_REF_SPLICE	YES	51	153	0.48	0.24	0.3716	0.138	LOCAL_REARRANGEMENT:+:[32457],BAG4->BCL2_associated_athanogene_4,chr8:38034051-38070819:+,ASH2L->ash2_(absent,_small,_or_homeotic)-like_(Drosophila),chr8:37962760-38001594:+	HCC1569_BREAST	0.24	0.48	0.5096	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	TCHP--UBR4	38	1	TCHP	10436	chr12:110350877:+	UBR4	39986	chr1:19505714:-	ONLY_REF_SPLICE	YES	33	20	0.54	0.66	0.4035	0.0106	TCHP->chr12:110338069-110421646:+,trichoplein_keratin_filament_binding,UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4	HCC1569_BREAST	0.54	0.66	0.4141	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	ENG--RPL29	37	4	ENG	2620	chr9:130605373:-	RPL29	17049	chr3:52029485:-	ONLY_REF_SPLICE	YES	66	22	0.38	0.65	0.3929	0.0425	ENG->chr9:130577291-130617035:-,endoglin,RPL29->chr3:52027616-52029958:-,ribosomal_protein_L29	HCC1569_BREAST	0.38	0.65	0.4354	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	GPX4--CNN2	35	12	GPX4	3523	chr19:1106458:+	CNN2	8757	chr19:1031070:+	ONLY_REF_SPLICE	YES	440	31	0.1	0.6	0.3716	0.1274	LOCAL_REARRANGEMENT:+:[64868],GPX4->chr19:1103936-1106787:+,glutathione_peroxidase_4,CNN2->calponin_2,chr19:1026298-1039068:+	HCC1569_BREAST	0.1	0.6	0.499	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PPFIA1--ANO1	33	10	PPFIA1	34543	chr11:70218680:+	ANO1	44896	chr11:69924648:+	INCL_NON_REF_SPLICE	YES	66	0	0.39	1	0.3504	0.1062	LOCAL_REARRANGEMENT:+:[81172],PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,ANO1->anoctamin_1,chr11:69924408-70035634:+	HCC1569_BREAST	0.39	1	0.4566	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	RP11-680G10.1--GSE1	33	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	13	1	0.74	0.3504	0.0425	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1569_BREAST	0.74	1	0.3929	TRUE	465	1949	224	605	0	FALSE	ACH-000930
HCC1569_BREAST	TIMM23--RP11-464F9.1	33	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	186	1	0.15	0.97	0.3504	0.0106	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC1569_BREAST	0.15	0.97	0.361	TRUE	519	3926	326	965	0	FALSE	ACH-000930
HCC1569_BREAST	URI1--ZFP42	32	2	URI1	5244	chr19:30433571:+	ZFP42	26746	chr4:188920763:+	ONLY_REF_SPLICE	YES	249	0	0.12	1	0.3398	0.0212	URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+,ZFP42->ZFP42_zinc_finger_protein,chr4:188916925-188926204:+	HCC1569_BREAST	0.12	1	0.361	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	BTG3--C21orf91	29	10	BTG3	7133	chr21:18970935:-	C21orf91	18186	chr21:19167587:-	ONLY_REF_SPLICE	YES	190	24	0.17	0.62	0.3079	0.1062	BTG3->BTG_family_member_3,chr21:18965971-18985265:-,C21orf91->chr21:19161284-19191703:-,chromosome_21_open_reading_frame_91	HCC1569_BREAST	0.17	0.62	0.4141	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	JDP2--ZC2HC1C	29	10	JDP2	4318	chr14:75904824:+	ZC2HC1C	21498	chr14:75544235:+	ONLY_REF_SPLICE	YES	41	2	0.49	0.95	0.3079	0.1062	JDP2->Jun_dimerization_protein_2,Oncogene{Bushman},chr14:75894419-75940814:+,ZC2HC1C->chr14:75530873-75545126:+,zinc_finger_C2HC-type_containing_1C	HCC1569_BREAST	0.49	0.95	0.4141	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	MT-ND6--MT-TE	27	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2867	0.0319	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1569_BREAST	1	1	0.3186	FALSE	499	1288	110	792	0	FALSE	ACH-000930
HCC1569_BREAST	MT-TA--MT-TN	10	71	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1062	0.7539	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1569_BREAST	1	1	0.8601	FALSE	369	2501	205	193	0	FALSE	ACH-000930
HCC1569_BREAST	MSH2--KCNK12	21	23	MSH2	9609	chr2:47672796:+	KCNK12	30010	chr2:47748947:-	ONLY_REF_SPLICE	YES	106	0	0.29	1	0.223	0.2442	NEIGHBORS_OVERLAP:+:-:[45730],MSH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47630108-47789450:+,mutS_homolog_2,KCNK12->chr2:47743720-47798078:-,potassium_two_pore_domain_channel_subfamily_K_member_12	HCC1569_BREAST	0.29	1	0.4672	FALSE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	MT-TA--MT-TN	11	50	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1168	0.5309	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1569_BREAST	1	1	0.6477	FALSE	369	2501	205	193	0	FALSE	ACH-000930
HCC1569_BREAST	AP5B1--CASC8	15	33	AP5B1	1361	chr11:65547913:-	CASC8	15885	chr8:128335399:-	ONLY_REF_SPLICE	YES	18	0	0.73	1	0.1593	0.3504	AP5B1->adaptor_related_protein_complex_5_beta_1_subunit,chr11:65543364-65548273:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC1569_BREAST	0.73	1	0.5097	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	MT-TA--MT-TN	13	38	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.138	0.4035	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1569_BREAST	1	1	0.5415	FALSE	369	2501	205	193	0	FALSE	ACH-000930
HCC1569_BREAST	AP000525.9--LA16c-60G3.6	22	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2336	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HCC1569_BREAST	1	1	0.2336	TRUE	0	42	0	133	42	FALSE	ACH-000930
HCC1569_BREAST	HSP90AB1--MT-RNR2	21	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.223	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1569_BREAST	1	1	0.223	FALSE	13	9	0	364	0	FALSE	ACH-000930
HCC1569_BREAST	HSP90AB1--MT-RNR2	20	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2124	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1569_BREAST	1	1	0.2124	FALSE	13	9	0	364	0	FALSE	ACH-000930
HCC1569_BREAST	AL589743.1--RP11-536C10.17	19	1	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	3	0	0.87	1	0.2017	0.0106	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	HCC1569_BREAST	0.87	1	0.2123	TRUE	0	33	0	45	33	FALSE	ACH-000930
HCC1569_BREAST	FNIP2--RXFP1	18	5	FNIP2	20031	chr4:159791621:+	RXFP1	57373	chr4:159572909:+	ONLY_REF_SPLICE	YES	13	0	0.64	1	0.1911	0.0531	FNIP2->chr4:159690290-159829201:+,folliculin_interacting_protein_2,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	HCC1569_BREAST	0.64	1	0.2442	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	ING1--COL4A2	16	10	ING1	2550	chr13:111366632:+	COL4A2	15370	chr13:111077081:+	ONLY_REF_SPLICE	YES	28	22	0.48	0.54	0.1699	0.1062	ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HCC1569_BREAST	0.48	0.54	0.2761	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	MT-TA--MT-TN	18	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1911	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1569_BREAST	1	1	0.1911	FALSE	369	2501	205	193	0	FALSE	ACH-000930
HCC1569_BREAST	ENG--RPL29	16	4	ENG	2620	chr9:130605373:-	RPL29	16616	chr3:52029918:-	INCL_NON_REF_SPLICE	YES	66	0	0.23	1	0.1699	0.0425	ENG->chr9:130577291-130617035:-,endoglin,RPL29->chr3:52027616-52029958:-,ribosomal_protein_L29	HCC1569_BREAST	0.23	1	0.2124	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	MT-TA--MT-TN	12	20	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1274	0.2124	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1569_BREAST	1	1	0.3398	FALSE	369	2501	205	193	0	FALSE	ACH-000930
HCC1569_BREAST	RP11-123O10.4--GRIP1	16	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1699	0.0106	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1569_BREAST	1	1	0.1805	FALSE	416	2512	207	587	0	FALSE	ACH-000930
HCC1569_BREAST	RP11-680G10.1--GSE1	14	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.73	0.1486	0.0531	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1569_BREAST	0.73	1	0.2017	TRUE	458	1351	185	561	0	FALSE	ACH-000930
HCC1569_BREAST	TRAPPC9--VSTM4	14	2	TRAPPC9	24393	chr8:141231558:-	VSTM4	78359	chr10:50227820:-	ONLY_REF_SPLICE	YES	15	0	0.52	1	0.1486	0.0212	{Klijn_CCL:Breast=1},TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,VSTM4->V-set_and_transmembrane_domain_containing_4,chr10:50222290-50323554:-	HCC1569_BREAST	0.52	1	0.1698	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	MT-ND6--MT-TE	13	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.138	0.0425	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1569_BREAST	1	1	0.1805	FALSE	499	1288	110	792	0	FALSE	ACH-000930
HCC1569_BREAST	MT-TA--MT-TC	13	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.138	0.0425	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1569_BREAST	1	1	0.1805	FALSE	462	80	0	856	0	FALSE	ACH-000930
HCC1569_BREAST	BOP1--LMF1	1	50	BOP1	2339	chr8:145512776:-	LMF1	27943	chr16:929737:-	ONLY_REF_SPLICE	YES	268	34	0.16	0.6	0.0106	0.5309	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,LMF1->Oncogene{Bushman},chr16:903634-1031318:-,lipase_maturation_factor_1	HCC1569_BREAST	0.16	0.6	0.5415	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	SEPT9--AMBN	13	2	SEPT9	23883	chr17:75447610:+	AMBN	46301	chr4:71458034:+	INCL_NON_REF_SPLICE	YES	347	0	0.04	1	0.138	0.0212	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,AMBN->ameloblastin,chr4:71457973-71473005:+	HCC1569_BREAST	0.04	1	0.1592	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	TOMM34--MATN4	11	9	TOMM34	7419	chr20:43571653:-	MATN4	19108	chr20:43922655:-	INCL_NON_REF_SPLICE	YES	192	2	0.09	0.91	0.1168	0.0956	TOMM34->chr20:43570771-43589127:-,translocase_of_outer_mitochondrial_membrane_34,MATN4->chr20:43922085-43937169:-,matrilin_4	HCC1569_BREAST	0.09	0.91	0.2124	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	RP11-96H19.1--RP11-446N19.1	12	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	0	0.8	1	0.1274	0.0425	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1569_BREAST	0.8	1	0.1699	FALSE	515	4851	409	746	0	FALSE	ACH-000930
HCC1569_BREAST	AP003900.6--CRBN	9	13	AP003900.6	1122	chr21:11169841:+	CRBN	9021	chr3:3216950:-	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.0956	0.138	AP003900.6->chr21:11169720-11184046:+,CRBN->cereblon,chr3:3190676-3221394:-	HCC1569_BREAST	0.96	1	0.2336	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	MT-ND6--MT-TE	10	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1062	0.0849	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1569_BREAST	1	1	0.1911	FALSE	499	1288	110	792	0	FALSE	ACH-000930
HCC1569_BREAST	FAM207A--ITGB2	10	3	FAM207A	2331	chr21:46363752:+	ITGB2	17877	chr21:46330700:-	ONLY_REF_SPLICE	YES	110	6	0.11	0.68	0.1062	0.0319	LOCAL_INVERSION:+:-:[8021],FAM207A->chr21:46359925-46396904:+,family_with_sequence_similarity_207_member_A,ITGB2->chr21:46305868-46351904:-,integrin_subunit_beta_2	HCC1569_BREAST	0.11	0.68	0.1381	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	CALR--PPP1R1B	9	4	CALR	4981	chr19:13054697:+	PPP1R1B	15093	chr17:37790207:+	INCL_NON_REF_SPLICE	NO	1851	4436	0.01	0	0.0956	0.0425	CALR->calreticulin,chr19:13049392-13055303:+,PPP1R1B->Oncogene{Bushman},chr17:37782993-37792879:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1B	HCC1569_BREAST	0	0.01	0.1381	FALSE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	SLC1A5--MT-ND4L	9	3	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	611	0	0.02	1	0.0956	0.0319	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1569_BREAST	0.02	1	0.1275	FALSE	0	0	0	189	0	FALSE	ACH-000930
HCC1569_BREAST	RP11-96H19.1--RP11-446N19.1	8	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.78	1	0.0849	0.0637	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1569_BREAST	0.78	1	0.1486	FALSE	407	2205	196	549	0	FALSE	ACH-000930
HCC1569_BREAST	SIPA1L3--TFCP2	4	22	SIPA1L3	3094	chr19:38423332:+	TFCP2	41142	chr12:51512555:-	ONLY_REF_SPLICE	YES	9	41	0.74	0.39	0.0425	0.2336	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,TFCP2->chr12:51487446-51566926:-,transcription_factor_CP2	HCC1569_BREAST	0.39	0.74	0.2761	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	TFDP2--XRN1	8	6	TFDP2	13353	chr3:141712380:-	XRN1	38638	chr3:142145683:-	ONLY_REF_SPLICE	YES	68	14	0.17	0.5	0.0849	0.0637	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=3,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1},TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2,XRN1->5'-3'_exoribonuclease_1,chr3:142025449-142166904:-	HCC1569_BREAST	0.17	0.5	0.1486	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	LIMCH1--UCHL1	2	29	LIMCH1	6783	chr4:41496623:+	UCHL1	52640	chr4:41258610:+	ONLY_REF_SPLICE	YES	39	0	0.44	1	0.0212	0.3079	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[91152],LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,UCHL1->chr4:41258430-41270472:+,ubiquitin_C-terminal_hydrolase_L1	HCC1569_BREAST	0.44	1	0.3291	TRUE	0	1	0	1	1	TRUE	ACH-000930
HCC1569_BREAST	C15orf57--CBX3	8	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	12	21	0.48	0.34	0.0849	0.0319	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1569_BREAST	0.34	0.48	0.1168	TRUE	267	562	48	632	0	FALSE	ACH-000930
HCC1569_BREAST	GPN1--PPM1G	8	3	GPN1	5350	chr2:27855537:+	PPM1G	19663	chr2:27610025:-	ONLY_REF_SPLICE	YES	68	240	0.14	0.04	0.0849	0.0319	GPN1->GPN-loop_GTPase_1,chr2:27851114-27874375:+,PPM1G->chr2:27604061-27632554:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1G	HCC1569_BREAST	0.04	0.14	0.1168	TRUE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	CALR--PPP1R1B	7	5	CALR	4981	chr19:13054697:+	PPP1R1B	15090	chr17:37790204:+	INCL_NON_REF_SPLICE	YES	1851	4456	0.01	0	0.0743	0.0531	CALR->calreticulin,chr19:13049392-13055303:+,PPP1R1B->Oncogene{Bushman},chr17:37782993-37792879:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1B	HCC1569_BREAST	0	0.01	0.1274	TRUE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	ERBB2--MT-ND4L	8	1	ERBB2	16098	chr17:37872098:+	MT-ND4L	30326	chrM:10626:+	INCL_NON_REF_SPLICE	YES	3542	3096	0	0	0.0849	0.0106	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1569_BREAST	0	0	0.0955	FALSE	0	0	0	3	0	FALSE	ACH-000930
HCC1569_BREAST	MT-TA--MT-TN	3	21	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0319	0.223	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1569_BREAST	1	1	0.2549	FALSE	369	2501	205	193	0	FALSE	ACH-000930
HCC1569_BREAST	RP4-617C6.1--RP11-286B14.1	7	5	RP4-617C6.1	1638	chr1:95940930:+	RP11-286B14.1	10602	chr1:95979707:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0743	0.0531	NEIGHBORS[30760],RP4-617C6.1->chr1:95940293-95944912:+,RP11-286B14.1->chr1:95975672-96247898:+	HCC1569_BREAST	1	1	0.1274	FALSE	0	0	0	2	0	FALSE	ACH-000930
HCC1569_BREAST	AP003900.6--CRBN	4	15	AP003900.6	2187	chr21:11172043:+	CRBN	9018	chr3:3216953:-	ONLY_REF_SPLICE	YES	2	1	0.9	0.95	0.0425	0.1593	AP003900.6->chr21:11169720-11184046:+,CRBN->cereblon,chr3:3190676-3221394:-	HCC1569_BREAST	0.9	0.95	0.2018	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	SEPT9--AMBN	7	2	SEPT9	23141	chr17:75446868:+	AMBN	46301	chr4:71458034:+	INCL_NON_REF_SPLICE	YES	339	0	0.03	1	0.0743	0.0212	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,AMBN->ameloblastin,chr4:71457973-71473005:+	HCC1569_BREAST	0.03	1	0.0955	TRUE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	AP003900.6--CRBN	3	17	AP003900.6	3299	chr21:11174002:+	CRBN	9018	chr3:3216953:-	ONLY_REF_SPLICE	YES	1	1	0.95	0.95	0.0319	0.1805	AP003900.6->chr21:11169720-11184046:+,CRBN->cereblon,chr3:3190676-3221394:-	HCC1569_BREAST	0.95	0.95	0.2124	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	BOP1--LMF1	1	25	BOP1	4671	chr8:145500212:-	LMF1	31630	chr16:921341:-	ONLY_REF_SPLICE	YES	331	103	0.07	0.2	0.0106	0.2654	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,LMF1->Oncogene{Bushman},chr16:903634-1031318:-,lipase_maturation_factor_1	HCC1569_BREAST	0.07	0.2	0.276	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PIGT--MT-CO3	7	1	PIGT	1184	chr20:44044900:+	MT-CO3	11739	chrM:9566:+	INCL_NON_REF_SPLICE	YES	340	10210	0.02	0	0.0743	0.0106	PIGT->chr20:44044717-44054884:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_T,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HCC1569_BREAST	0	0.02	0.0849	FALSE	0	0	0	5	0	FALSE	ACH-000930
HCC1569_BREAST	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1569_BREAST	1	1	0.0743	FALSE	499	1288	110	792	0	FALSE	ACH-000930
HCC1569_BREAST	MT-TL1--MT-RNR2	7	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1569_BREAST	1	1	0.0743	FALSE	7	521	16	32	0	FALSE	ACH-000930
HCC1569_BREAST	SCARB1--UBC	7	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0743	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	HCC1569_BREAST	1	1	0.0743	TRUE	55	66	6	101	0	FALSE	ACH-000930
HCC1569_BREAST	BTG3--C21orf91	5	7	BTG3	7133	chr21:18970935:-	C21orf91	19249	chr21:19165898:-	ONLY_REF_SPLICE	YES	190	34	0.06	0.26	0.0531	0.0743	BTG3->BTG_family_member_3,chr21:18965971-18985265:-,C21orf91->chr21:19161284-19191703:-,chromosome_21_open_reading_frame_91	HCC1569_BREAST	0.06	0.26	0.1274	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	APP--MT-CO3	5	6	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	2254	9189	0	0	0.0531	0.0637	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HCC1569_BREAST	0	0	0.1168	FALSE	0	0	0	26	0	FALSE	ACH-000930
HCC1569_BREAST	RP11-634B7.4--TRIM58	6	2	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	9	0.89	0.47	0.0637	0.0212	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	HCC1569_BREAST	0.47	0.89	0.0849	TRUE	158	633	76	73	0	FALSE	ACH-000930
HCC1569_BREAST	ANXA2--NARG2	6	1	ANXA2	26813	chr15:60643392:-	NARG2	60472	chr15:60713178:-	INCL_NON_REF_SPLICE	YES	955	4	0.01	0.64	0.0637	0.0106	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	HCC1569_BREAST	0.01	0.64	0.0743	FALSE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	DPY19L4--IL1RN	6	1	DPY19L4	17682	chr8:95793394:+	IL1RN	29238	chr2:113868693:+	ONLY_REF_SPLICE	YES	48	0	0.13	1	0.0637	0.0106	DPY19L4->chr8:95731931-95806064:+,dpy-19_like_4_(C._elegans),IL1RN->chr2:113864791-113891593:+,interleukin_1_receptor_antagonist	HCC1569_BREAST	0.13	1	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	FAM207A--ITGB2	6	1	FAM207A	2286	chr21:46363707:+	ITGB2	17877	chr21:46330700:-	ONLY_REF_SPLICE	YES	87	6	0.07	0.54	0.0637	0.0106	LOCAL_INVERSION:+:-:[8021],FAM207A->chr21:46359925-46396904:+,family_with_sequence_similarity_207_member_A,ITGB2->chr21:46305868-46351904:-,integrin_subunit_beta_2	HCC1569_BREAST	0.07	0.54	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	ERBB2--MT-ND4L	4	8	ERBB2	24987	chr17:37884137:+	MT-ND4L	30171	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2104	0	0.01	1	0.0425	0.0849	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1569_BREAST	0.01	1	0.1274	FALSE	0	1	0	4	0	FALSE	ACH-000930
HCC1569_BREAST	HDGF--MT-ATP8	6	0	HDGF	9880	chr1:156713024:-	MT-ATP8	14064	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0637	0	HDGF->chr1:156711899-156736717:-,hepatoma-derived_growth_factor,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1569_BREAST	1	1	0.0637	FALSE	0	0	0	3	0	FALSE	ACH-000930
HCC1569_BREAST	MT-ND6--MT-TE	6	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0637	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1569_BREAST	1	1	0.0637	FALSE	499	1288	110	792	0	FALSE	ACH-000930
HCC1569_BREAST	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0637	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1569_BREAST	1	1	0.0637	FALSE	369	2501	205	193	0	FALSE	ACH-000930
HCC1569_BREAST	MT-TA--MT-TN	6	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0637	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1569_BREAST	1	1	0.0637	FALSE	369	2501	205	193	0	FALSE	ACH-000930
HCC1569_BREAST	PVT1--RP11-382A18.2	6	0	PVT1	8346	chr8:128903244:+	RP11-382A18.2	29614	chr8:128404749:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0637	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-382A18.2->chr8:128351519-128404876:+	HCC1569_BREAST	1	1	0.0637	TRUE	0	1	0	1	1	TRUE	ACH-000930
HCC1569_BREAST	TMEM189--GMDS	2	16	TMEM189	1282	chr20:48770054:-	GMDS	35335	chr6:1624775:-	ONLY_REF_SPLICE	YES	180	68	0.09	0.21	0.0212	0.1699	TMEM189->chr20:48697663-48770335:-,transmembrane_protein_189,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	HCC1569_BREAST	0.09	0.21	0.1911	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	GALNT3--AC009495.3	5	3	GALNT3	1668	chr2:166650525:-	AC009495.3	19083	chr2:166693588:-	ONLY_REF_SPLICE	YES	17	0	0.32	1	0.0531	0.0319	LOCAL_REARRANGEMENT:-:[38366],GALNT3->chr2:166604101-166651192:-,polypeptide_N-acetylgalactosaminyltransferase_3,AC009495.3->chr2:166689558-166695608:-	HCC1569_BREAST	0.32	1	0.085	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	MT-ND6--MT-TE	4	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0425	0.0743	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1569_BREAST	1	1	0.1168	FALSE	499	1288	110	792	0	FALSE	ACH-000930
HCC1569_BREAST	PSD3--CSGALNACT1	4	7	PSD3	3423	chr8:18871073:-	CSGALNACT1	67615	chr8:19263580:-	ONLY_REF_SPLICE	YES	2	78	0.85	0.12	0.0425	0.0743	{Klijn_CCL:Breast=1},PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,CSGALNACT1->chondroitin_sulfate_N-acetylgalactosaminyltransferase_1,chr8:19261672-19615540:-	HCC1569_BREAST	0.12	0.85	0.1168	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	C15orf57--CBX3	5	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	12	23	0.37	0.23	0.0531	0.0212	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1569_BREAST	0.23	0.37	0.0743	TRUE	267	562	48	632	0	FALSE	ACH-000930
HCC1569_BREAST	URI1--ZFP42	4	5	URI1	5244	chr19:30433571:+	ZFP42	26245	chr4:188920262:+	ONLY_REF_SPLICE	YES	249	0	0.03	1	0.0425	0.0531	URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+,ZFP42->ZFP42_zinc_finger_protein,chr4:188916925-188926204:+	HCC1569_BREAST	0.03	1	0.0956	TRUE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	MT-TA--MT-TN	5	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1569_BREAST	1	1	0.0531	FALSE	369	2501	205	193	0	FALSE	ACH-000930
HCC1569_BREAST	TMEM189--GMDS	1	16	TMEM189	2386	chr20:48767749:-	GMDS	35335	chr6:1624775:-	ONLY_REF_SPLICE	YES	215	68	0.07	0.2	0.0106	0.1699	TMEM189->chr20:48697663-48770335:-,transmembrane_protein_189,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	HCC1569_BREAST	0.07	0.2	0.1805	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	AP000350.4--PKM	3	7	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	11	1	0.48	0.0319	0.0743	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	HCC1569_BREAST	0.48	1	0.1062	TRUE	0	0	0	14	0	TRUE	ACH-000930
HCC1569_BREAST	AP003900.6--CRBN	1	15	AP003900.6	3299	chr21:11174002:+	CRBN	9021	chr3:3216950:-	ONLY_REF_SPLICE	YES	1	1	0.94	0.94	0.0106	0.1593	AP003900.6->chr21:11169720-11184046:+,CRBN->cereblon,chr3:3190676-3221394:-	HCC1569_BREAST	0.94	0.94	0.1699	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	CALR--PPP1R1B	4	3	CALR	4981	chr19:13054697:+	PPP1R1B	15138	chr17:37790252:+	INCL_NON_REF_SPLICE	YES	1851	4718	0	0	0.0425	0.0319	CALR->calreticulin,chr19:13049392-13055303:+,PPP1R1B->Oncogene{Bushman},chr17:37782993-37792879:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1B	HCC1569_BREAST	0	0	0.0744	FALSE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	LIMCH1--UCHL1	1	15	LIMCH1	2330	chr4:41362953:+	UCHL1	52640	chr4:41258610:+	ONLY_REF_SPLICE	YES	61	0	0.21	1	0.0106	0.1593	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[91152],LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,UCHL1->chr4:41258430-41270472:+,ubiquitin_C-terminal_hydrolase_L1	HCC1569_BREAST	0.21	1	0.1699	TRUE	0	1	0	2	1	TRUE	ACH-000930
HCC1569_BREAST	SLC1A5--MT-ND4L	3	7	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	603	0	0.02	1	0.0319	0.0743	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1569_BREAST	0.02	1	0.1062	FALSE	0	0	0	189	0	FALSE	ACH-000930
HCC1569_BREAST	AP000350.4--PKM	3	6	AP000350.4	3763	chr22:24236622:-	PKM	7417	chr15:72523520:-	INCL_NON_REF_SPLICE	YES	0	10	1	0.47	0.0319	0.0637	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	HCC1569_BREAST	0.47	1	0.0956	TRUE	0	0	0	14	0	TRUE	ACH-000930
HCC1569_BREAST	CALR--PPP1R1B	4	2	CALR	4981	chr19:13054697:+	PPP1R1B	15186	chr17:37790300:+	INCL_NON_REF_SPLICE	YES	1851	4609	0	0	0.0425	0.0212	CALR->calreticulin,chr19:13049392-13055303:+,PPP1R1B->Oncogene{Bushman},chr17:37782993-37792879:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1B	HCC1569_BREAST	0	0	0.0637	FALSE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	CALR--PPP1R1B	4	2	CALR	4972	chr19:13054688:+	PPP1R1B	15183	chr17:37790297:+	INCL_NON_REF_SPLICE	YES	1869	4536	0	0	0.0425	0.0212	CALR->calreticulin,chr19:13049392-13055303:+,PPP1R1B->Oncogene{Bushman},chr17:37782993-37792879:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1B	HCC1569_BREAST	0	0	0.0637	FALSE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	CSNK2A1--ANGPT4	2	10	CSNK2A1	10082	chr20:478365:-	ANGPT4	26379	chr20:871011:-	ONLY_REF_SPLICE	YES	367	0	0.03	1	0.0212	0.1062	CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-,ANGPT4->angiopoietin_4,chr20:853296-896977:-	HCC1569_BREAST	0.03	1	0.1274	TRUE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	MT-ND6--MT-TE	3	6	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0.0637	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1569_BREAST	1	1	0.0956	FALSE	499	1288	110	792	0	FALSE	ACH-000930
HCC1569_BREAST	PDE4D--CENPF	4	2	PDE4D	13468	chr5:59284315:-	CENPF	66574	chr1:214802389:+	ONLY_REF_SPLICE	YES	8	99	0.43	0.06	0.0425	0.0212	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,CENPF->Oncogene{Bushman},centromere_protein_F,chr1:214776538-214837931:+	HCC1569_BREAST	0.06	0.43	0.0637	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	GALNT3--AC009495.4	4	1	GALNT3	1668	chr2:166650525:-	AC009495.4	17839	chr2:166702602:-	INCL_NON_REF_SPLICE	YES	17	0	0.23	1	0.0425	0.0106	LOCAL_REARRANGEMENT:-:[175],GALNT3->chr2:166604101-166651192:-,polypeptide_N-acetylgalactosaminyltransferase_3,AC009495.4->chr2:166651367-166702601:-	HCC1569_BREAST	0.23	1	0.0531	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PFKL--MT-ND4L	4	1	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	308	0	0.02	1	0.0425	0.0106	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1569_BREAST	0.02	1	0.0531	FALSE	0	0	0	33	0	FALSE	ACH-000930
HCC1569_BREAST	PPFIA1--ANO1	4	1	PPFIA1	34543	chr11:70218680:+	ANO1	47326	chr11:69933858:+	ONLY_REF_SPLICE	YES	66	7	0.07	0.42	0.0425	0.0106	LOCAL_REARRANGEMENT:+:[81172],PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,ANO1->anoctamin_1,chr11:69924408-70035634:+	HCC1569_BREAST	0.07	0.42	0.0531	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	RCAN3--GRHL3	3	5	RCAN3	4844	chr1:24857881:+	GRHL3	32836	chr1:24690675:+	ONLY_REF_SPLICE	YES	11	0	0.42	1	0.0319	0.0531	RCAN3->RCAN_family_member_3,chr1:24829387-24867530:+,GRHL3->chr1:24645812-24690972:+,grainyhead_like_transcription_factor_3	HCC1569_BREAST	0.42	1	0.085	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	38	0.71	0.12	0.0425	0.0106	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC1569_BREAST	0.12	0.71	0.0531	FALSE	16	356	14	466	0	FALSE	ACH-000930
HCC1569_BREAST	ERBB2--MT-ND4L	3	4	ERBB2	24596	chr17:37883746:+	MT-ND4L	30171	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2194	0	0	1	0.0319	0.0425	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1569_BREAST	0	1	0.0744	FALSE	0	1	0	4	0	FALSE	ACH-000930
HCC1569_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0425	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1569_BREAST	1	1	0.0425	FALSE	499	1288	110	792	0	FALSE	ACH-000930
HCC1569_BREAST	MT-TA--MT-TN	4	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0425	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1569_BREAST	1	1	0.0425	FALSE	369	2501	205	193	0	FALSE	ACH-000930
HCC1569_BREAST	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0319	0.0425	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1569_BREAST	0.88	1	0.0744	FALSE	467	2173	244	435	0	FALSE	ACH-000930
HCC1569_BREAST	BOP1--LMF1	1	11	BOP1	2339	chr8:145512776:-	LMF1	31630	chr16:921341:-	ONLY_REF_SPLICE	YES	268	103	0.04	0.1	0.0106	0.1168	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,LMF1->Oncogene{Bushman},chr16:903634-1031318:-,lipase_maturation_factor_1	HCC1569_BREAST	0.04	0.1	0.1274	TRUE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	LIMCH1--UCHL1	3	3	LIMCH1	7853	chr4:41526495:+	UCHL1	54793	chr4:41262664:+	ONLY_REF_SPLICE	YES	41	164	0.13	0.04	0.0319	0.0319	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[91152],LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,UCHL1->chr4:41258430-41270472:+,ubiquitin_C-terminal_hydrolase_L1	HCC1569_BREAST	0.04	0.13	0.0638	TRUE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	ARRB1--MAP6	3	2	ARRB1	1242	chr11:75062632:-	MAP6	26865	chr11:75380163:-	INCL_NON_REF_SPLICE	YES	12	0	0.29	1	0.0319	0.0212	ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,MAP6->chr11:75297963-75380165:-,microtubule_associated_protein_6	HCC1569_BREAST	0.29	1	0.0531	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	EEF2K--UQCRC2	3	2	EEF2K	15952	chr16:22285071:+	UQCRC2	39577	chr16:21991868:+	ONLY_REF_SPLICE	YES	20	215	0.2	0.02	0.0319	0.0212	EEF2K->chr16:22217603-22298554:+,eukaryotic_elongation_factor_2_kinase,UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II	HCC1569_BREAST	0.02	0.2	0.0531	TRUE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	CALR--PPP1R1B	3	0	CALR	4929	chr19:13054645:+	PPP1R1B	15134	chr17:37790248:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	CALR->calreticulin,chr19:13049392-13055303:+,PPP1R1B->Oncogene{Bushman},chr17:37782993-37792879:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1B	HCC1569_BREAST	1	1	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	ERBB2--SH3PXD2A	3	0	ERBB2	16192	chr17:37872192:+	SH3PXD2A	41279	chr10:105420872:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0319	0	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,SH3PXD2A->SH3_and_PX_domains_2A,chr10:105348285-105615301:-	HCC1569_BREAST	1	1	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1569_BREAST	1	1	0.0319	FALSE	462	80	0	856	0	FALSE	ACH-000930
HCC1569_BREAST	MT-TA--MT-TN	3	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1569_BREAST	1	1	0.0319	FALSE	369	2501	205	193	0	FALSE	ACH-000930
HCC1569_BREAST	PPP1R1B--HNRNPA2B1	3	0	PPP1R1B	7556	chr17:37790257:+	HNRNPA2B1	19507	chr7:26233284:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	PPP1R1B->Oncogene{Bushman},chr17:37782993-37792879:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1B,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1	HCC1569_BREAST	1	1	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	ING1--COL4A2	2	2	ING1	1851	chr13:111365933:+	COL4A2	15370	chr13:111077081:+	ONLY_REF_SPLICE	NO	2	22	0.67	0.15	0.0212	0.0212	ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HCC1569_BREAST	0.15	0.67	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.88	1	0.0106	0.0637	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1569_BREAST	0.88	1	0.0743	FALSE	192	492	57	212	0	FALSE	ACH-000930
HCC1569_BREAST	AP003900.6--CRBN	1	5	AP003900.6	1122	chr21:11169841:+	CRBN	10026	chr3:3215945:-	ONLY_REF_SPLICE	NO	0	75	1	0.07	0.0106	0.0531	AP003900.6->chr21:11169720-11184046:+,CRBN->cereblon,chr3:3190676-3221394:-	HCC1569_BREAST	0.07	1	0.0637	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PVT1--MYC	2	1	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	140	192	0.02	0.02	0.0212	0.0106	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	HCC1569_BREAST	0.02	0.02	0.0318	TRUE	3	14	0	24	0	FALSE	ACH-000930
HCC1569_BREAST	RCAN3--GRHL3	1	5	RCAN3	6016	chr1:24859744:+	GRHL3	32836	chr1:24690675:+	ONLY_REF_SPLICE	YES	8	0	0.43	1	0.0106	0.0531	RCAN3->RCAN_family_member_3,chr1:24829387-24867530:+,GRHL3->chr1:24645812-24690972:+,grainyhead_like_transcription_factor_3	HCC1569_BREAST	0.43	1	0.0637	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0.0106	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1569_BREAST	1	1	0.0318	FALSE	93	270	15	244	0	FALSE	ACH-000930
HCC1569_BREAST	RP11-141M1.3--STARD13	2	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	18	1	0.14	0.0212	0.0106	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HCC1569_BREAST	0.14	1	0.0318	FALSE	141	264	50	91	0	FALSE	ACH-000930
HCC1569_BREAST	RP4-617C6.1--RP11-286B14.1	2	1	RP4-617C6.1	1638	chr1:95940930:+	RP11-286B14.1	14027	chr1:96242703:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0212	0.0106	NEIGHBORS[30760],RP4-617C6.1->chr1:95940293-95944912:+,RP11-286B14.1->chr1:95975672-96247898:+	HCC1569_BREAST	1	1	0.0318	FALSE	0	0	1	2	0	FALSE	ACH-000930
HCC1569_BREAST	AC004980.7--PHTF2	2	0	AC004980.7	2605	chr7:76180839:+	PHTF2	14551	chr7:77522925:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	AC004980.7->chr7:76178677-76257299:+,PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2	HCC1569_BREAST	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	AGO2--PTK2	2	0	AGO2	5900	chr8:141582911:-	PTK2	86440	chr8:141669777:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[22281],AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	HCC1569_BREAST	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	DPY19L4--IL1RN	2	0	DPY19L4	16931	chr8:95792643:+	IL1RN	29238	chr2:113868693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	DPY19L4->chr8:95731931-95806064:+,dpy-19_like_4_(C._elegans),IL1RN->chr2:113864791-113891593:+,interleukin_1_receptor_antagonist	HCC1569_BREAST	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	KPNA6--PTP4A2	2	0	KPNA6	1097	chr1:32573735:+	PTP4A2	32073	chr1:32385259:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	KPNA6->chr1:32573639-32642169:+,karyopherin_subunit_alpha_6,PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2	HCC1569_BREAST	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	TOMM34--MATN4	1	4	TOMM34	6978	chr20:43572094:-	MATN4	19108	chr20:43922655:-	ONLY_REF_SPLICE	YES	236	2	0.02	0.71	0.0106	0.0425	TOMM34->chr20:43570771-43589127:-,translocase_of_outer_mitochondrial_membrane_34,MATN4->chr20:43922085-43937169:-,matrilin_4	HCC1569_BREAST	0.02	0.71	0.0531	TRUE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	CSNK2A1--ANGPT4	1	3	CSNK2A1	10082	chr20:478365:-	ANGPT4	27535	chr20:869082:-	ONLY_REF_SPLICE	YES	367	6	0.01	0.4	0.0106	0.0319	CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-,ANGPT4->angiopoietin_4,chr20:853296-896977:-	HCC1569_BREAST	0.01	0.4	0.0425	FALSE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	FAM207A--ITGB2	1	3	FAM207A	2331	chr21:46363752:+	ITGB2	14882	chr21:46340965:-	ONLY_REF_SPLICE	YES	110	2	0.04	0.67	0.0106	0.0319	LOCAL_INVERSION:+:-:[8021],FAM207A->chr21:46359925-46396904:+,family_with_sequence_similarity_207_member_A,ITGB2->chr21:46305868-46351904:-,integrin_subunit_beta_2	HCC1569_BREAST	0.04	0.67	0.0425	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	FAM207A--ITGB2	1	1	FAM207A	2286	chr21:46363707:+	ITGB2	14882	chr21:46340965:-	ONLY_REF_SPLICE	YES	87	2	0.02	0.5	0.0106	0.0106	LOCAL_INVERSION:+:-:[8021],FAM207A->chr21:46359925-46396904:+,family_with_sequence_similarity_207_member_A,ITGB2->chr21:46305868-46351904:-,integrin_subunit_beta_2	HCC1569_BREAST	0.02	0.5	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	IFRD1--ZNF277	1	1	IFRD1	1465	chr7:112063487:+	ZNF277	33256	chr7:111977785:+	ONLY_REF_SPLICE	YES	1	24	0.67	0.08	0.0106	0.0106	LOCAL_REARRANGEMENT:+:[79872],IFRD1->chr7:112063023-112121072:+,interferon_related_developmental_regulator_1,ZNF277->chr7:111846643-111983151:+,zinc_finger_protein_277	HCC1569_BREAST	0.08	0.67	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000930
HCC1569_BREAST	PVT1--MYC	1	1	PVT1	1202	chr8:128806980:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	140	187	0.01	0.01	0.0106	0.0106	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	HCC1569_BREAST	0.01	0.01	0.0212	FALSE	3	14	0	24	0	FALSE	ACH-000930
HCC1569_BREAST	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	28	1	0.07	0.0106	0.0106	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1569_BREAST	0.07	1	0.0212	TRUE	64	13	3	59	0	FALSE	ACH-000930
HCC1569_BREAST	RP4-617C6.1--RP11-286B14.1	1	1	RP4-617C6.1	1638	chr1:95940930:+	RP11-286B14.1	12916	chr1:96004138:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0.0106	NEIGHBORS[30760],RP4-617C6.1->chr1:95940293-95944912:+,RP11-286B14.1->chr1:95975672-96247898:+	HCC1569_BREAST	1	1	0.0212	FALSE	0	0	0	2	0	FALSE	ACH-000930
HCC1569_BREAST	SHROOM3--NUP54	1	1	SHROOM3	2121	chr4:77357373:+	NUP54	42041	chr4:77051902:-	ONLY_REF_SPLICE	YES	16	95	0.11	0.02	0.0106	0.0106	SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3,NUP54->chr4:77035812-77069668:-,nucleoporin_54kDa	HCC1569_BREAST	0.02	0.11	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	TRAF3--KLC1	1	1	TRAF3	4544	chr14:103296809:+	KLC1	28300	chr14:104120901:+	ONLY_REF_SPLICE	YES	19	68	0.1	0.03	0.0106	0.0106	TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	HCC1569_BREAST	0.03	0.1	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000930
HCC1569_BREAST	WDR37--ZMYND11	1	1	WDR37	2669	chr10:1102908:+	ZMYND11	26026	chr10:225934:+	ONLY_REF_SPLICE	YES	10	21	0.17	0.09	0.0106	0.0106	WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	HCC1569_BREAST	0.09	0.17	0.0212	TRUE	0	0	0	2	0	TRUE	ACH-000930
SW1271_LUNG	AP003900.6--AC008132.1	144	13	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	2	0	0.99	1	1.5805	0.1427	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1271_LUNG	0.99	1	1.7232	TRUE	0	0	0	25	0	FALSE	ACH-000890
SW1271_LUNG	TIMM23B--LINC00843	93	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0207	0.2415	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SW1271_LUNG	0.99	1	1.2622	TRUE	508	994	45	981	0	FALSE	ACH-000890
SW1271_LUNG	TIMM23--RP11-464F9.1	51	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	265	2	0.16	0.96	0.5598	0.011	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SW1271_LUNG	0.16	0.96	0.5708	TRUE	519	3926	326	965	0	FALSE	ACH-000890
SW1271_LUNG	AP003900.6--AC008132.1	48	11	AP003900.6	1122	chr21:11169841:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	2	0	0.97	1	0.5268	0.1207	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1271_LUNG	0.97	1	0.6475	TRUE	0	0	0	25	0	FALSE	ACH-000890
SW1271_LUNG	ZNF407--DCC	42	21	ZNF407	2393	chr18:72343243:+	DCC	63906	chr18:50936822:+	INCL_NON_REF_SPLICE	YES	4	0	0.94	1	0.461	0.2305	ZNF407->chr18:72265106-72777627:+,zinc_finger_protein_407,DCC->DCC_netrin_1_receptor,Oncogene{Bushman},chr18:49866542-51057784:+	SW1271_LUNG	0.94	1	0.6915	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	C15orf57--CBX3	27	15	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	33	45	0.56	0.48	0.2963	0.1646	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SW1271_LUNG	0.48	0.56	0.4609	TRUE	267	562	48	632	0	FALSE	ACH-000890
SW1271_LUNG	RNASE10--PTGR1	28	11	RNASE10	1483	chr14:20974178:+	PTGR1	16126	chr9:114337122:-	ONLY_REF_SPLICE	YES	0	7	1	0.85	0.3073	0.1207	GTEx_FI:{Liver=[count:3=pct:2.5],Lung=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Small_Intestine=[count:1=pct:1.8],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Visceral_(Omentum)=2,Lung=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1},RNASE10->Oncogene{Bushman},chr14:20973696-20979328:+,ribonuclease_A_family_member_10_(inactive),PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	SW1271_LUNG	0.85	1	0.428	TRUE	9	1	0	6	0	FALSE	ACH-000890
SW1271_LUNG	ZNF654--HMGB2	26	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2854	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SW1271_LUNG	1	1	0.2854	TRUE	0	0	0	518	0	FALSE	ACH-000890
SW1271_LUNG	NPM1P24--SET	21	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	55	1815	0.29	0.01	0.2305	0.011	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SW1271_LUNG	0.01	0.29	0.2415	TRUE	0	0	0	434	0	FALSE	ACH-000890
SW1271_LUNG	MT-ND6--MT-TE	20	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2195	0.022	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1271_LUNG	0.96	1	0.2415	FALSE	499	1288	110	792	0	FALSE	ACH-000890
SW1271_LUNG	YAP1--PDGFD	16	14	YAP1	1709	chr11:101981900:+	PDGFD	22451	chr11:103870983:-	ONLY_REF_SPLICE	YES	250	1	0.11	0.97	0.1756	0.1537	YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,PDGFD->chr11:103777914-104035107:-,platelet_derived_growth_factor_D	SW1271_LUNG	0.11	0.97	0.3293	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	MT-TA--MT-TC	18	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1976	0.0549	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW1271_LUNG	1	1	0.2525	FALSE	462	80	0	856	0	FALSE	ACH-000890
SW1271_LUNG	RP11-680G10.1--GSE1	18	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	14	1	0.62	0.1976	0.0549	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW1271_LUNG	0.62	1	0.2525	TRUE	458	1351	185	561	0	FALSE	ACH-000890
SW1271_LUNG	PRPF39--FAM179B	17	8	PRPF39	1151	chr14:45553452:+	FAM179B	44266	chr14:45540915:+	ONLY_REF_SPLICE	YES	23	20	0.52	0.56	0.1866	0.0878	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cortex=1},LOCAL_REARRANGEMENT:+:[9668],PRPF39->chr14:45553302-45585485:+,pre-mRNA_processing_factor_39,FAM179B->chr14:45431411-45543634:+,family_with_sequence_similarity_179_member_B	SW1271_LUNG	0.52	0.56	0.2744	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	WAC--AC018705.5	18	2	WAC	2542	chr10:28822963:+	AC018705.5	30616	chr7:50609044:+	ONLY_REF_SPLICE	YES	130	0	0.13	1	0.1976	0.022	WAC->WW_domain_containing_adaptor_with_coiled-coil,chr10:28821422-28912041:+,AC018705.5->chr7:50599457-50611161:+	SW1271_LUNG	0.13	1	0.2196	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	ZNF407--DCC	14	11	ZNF407	2222	chr18:72343072:+	DCC	63906	chr18:50936822:+	INCL_NON_REF_SPLICE	YES	18	0	0.58	1	0.1537	0.1207	ZNF407->chr18:72265106-72777627:+,zinc_finger_protein_407,DCC->DCC_netrin_1_receptor,Oncogene{Bushman},chr18:49866542-51057784:+	SW1271_LUNG	0.58	1	0.2744	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	MT-ND6--MT-TE	11	14	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.1207	0.1537	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1271_LUNG	0.89	1	0.2744	FALSE	499	1288	110	792	0	FALSE	ACH-000890
SW1271_LUNG	YAP1--PDGFD	11	14	YAP1	1709	chr11:101981900:+	PDGFD	22469	chr11:103870965:-	ONLY_REF_SPLICE	YES	250	1	0.09	0.96	0.1207	0.1537	YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,PDGFD->chr11:103777914-104035107:-,platelet_derived_growth_factor_D	SW1271_LUNG	0.09	0.96	0.2744	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	YAP1--PDGFD	12	4	YAP1	1709	chr11:101981900:+	PDGFD	24837	chr11:103818452:-	ONLY_REF_SPLICE	YES	250	9	0.06	0.64	0.1317	0.0439	YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,PDGFD->chr11:103777914-104035107:-,platelet_derived_growth_factor_D	SW1271_LUNG	0.06	0.64	0.1756	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	C15orf57--CBX3	10	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	33	47	0.39	0.31	0.1098	0.1207	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SW1271_LUNG	0.31	0.39	0.2305	TRUE	267	562	48	632	0	FALSE	ACH-000890
SW1271_LUNG	AP003900.6--AC008132.1	7	21	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	5	0	0.85	1	0.0768	0.2305	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1271_LUNG	0.85	1	0.3073	TRUE	1	1	0	28	1	FALSE	ACH-000890
SW1271_LUNG	CTD-2337A12.1--CAST	11	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1207	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SW1271_LUNG	1	1	0.1207	TRUE	347	1186	183	220	0	FALSE	ACH-000890
SW1271_LUNG	MT-ND6--MT-TE	10	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.1098	0.022	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1271_LUNG	0.92	1	0.1318	FALSE	499	1288	110	792	0	FALSE	ACH-000890
SW1271_LUNG	AP003900.6--AC008132.1	6	17	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	5	0	0.82	1	0.0659	0.1866	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1271_LUNG	0.82	1	0.2525	TRUE	0	0	0	12	0	TRUE	ACH-000890
SW1271_LUNG	HSP90AB1--MT-RNR2	9	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3112	0	0	1	0.0988	0.022	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SW1271_LUNG	0	1	0.1208	FALSE	13	9	0	364	0	FALSE	ACH-000890
SW1271_LUNG	RP11-123O10.4--GRIP1	9	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0988	0.011	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SW1271_LUNG	1	1	0.1098	FALSE	416	2512	207	587	0	FALSE	ACH-000890
SW1271_LUNG	HSP90AB1--MT-RNR2	8	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3093	0	0	1	0.0878	0.022	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SW1271_LUNG	0	1	0.1098	FALSE	13	9	0	364	0	FALSE	ACH-000890
SW1271_LUNG	MT-TA--MT-TC	7	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0768	0.0549	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW1271_LUNG	1	1	0.1317	FALSE	462	80	0	856	0	FALSE	ACH-000890
SW1271_LUNG	AP000525.9--LA16c-60G3.6	7	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0768	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SW1271_LUNG	1	1	0.0768	TRUE	0	42	0	133	42	FALSE	ACH-000890
SW1271_LUNG	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0768	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW1271_LUNG	1	1	0.0768	FALSE	292	1546	117	613	0	FALSE	ACH-000890
SW1271_LUNG	RP11-155G15.2--RP11-1E3.1	6	3	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0659	0.0329	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	SW1271_LUNG	1	1	0.0988	FALSE	46	201	11	112	0	FALSE	ACH-000890
SW1271_LUNG	PRR16--CTD-2334D19.1	6	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	71	0	0.1	1	0.0659	0.022	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SW1271_LUNG	0.1	1	0.0879	FALSE	56	216	12	147	0	FALSE	ACH-000890
SW1271_LUNG	AP003900.6--AC008132.1	2	17	AP003900.6	3299	chr21:11174002:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	5	0	0.79	1	0.022	0.1866	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1271_LUNG	0.79	1	0.2086	TRUE	1	1	0	28	1	FALSE	ACH-000890
SW1271_LUNG	PRPF39--FAM179B	5	5	PRPF39	1151	chr14:45553452:+	FAM179B	45353	chr14:45542499:+	ONLY_REF_SPLICE	YES	23	28	0.3	0.26	0.0549	0.0549	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cortex=1},LOCAL_REARRANGEMENT:+:[9668],PRPF39->chr14:45553302-45585485:+,pre-mRNA_processing_factor_39,FAM179B->chr14:45431411-45543634:+,family_with_sequence_similarity_179_member_B	SW1271_LUNG	0.26	0.3	0.1098	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	PKM--ALDOA	6	0	PKM	10614	chr15:72502054:-	ALDOA	31408	chr16:30078920:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0	GTEx&tcga_normals:1/3694=0.03%,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	SW1271_LUNG	1	1	0.0659	TRUE	0	0	0	2	0	TRUE	ACH-000890
SW1271_LUNG	PRR16--CTD-2334D19.1	5	4	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	20	0	0.31	1	0.0549	0.0439	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SW1271_LUNG	0.31	1	0.0988	FALSE	21	45	1	60	0	FALSE	ACH-000890
SW1271_LUNG	RP11-680G10.1--GSE1	5	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	45	1	0.15	0.0549	0.0329	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW1271_LUNG	0.15	1	0.0878	TRUE	465	1949	224	605	0	FALSE	ACH-000890
SW1271_LUNG	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.85	0.92	0.0439	0.0768	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW1271_LUNG	0.85	0.92	0.1207	FALSE	515	4851	409	746	0	FALSE	ACH-000890
SW1271_LUNG	PAWR--RP1-78O14.1	5	2	PAWR	15902	chr12:79986391:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	104	0	0.06	1	0.0549	0.022	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	SW1271_LUNG	0.06	1	0.0769	FALSE	3	4	0	12	0	FALSE	ACH-000890
SW1271_LUNG	RP11-96H19.1--RP11-446N19.1	3	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	1	0.92	0.92	0.0329	0.0988	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW1271_LUNG	0.92	0.92	0.1317	FALSE	192	492	57	212	0	FALSE	ACH-000890
SW1271_LUNG	CHSY3--HSPA8P4	5	0	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	SW1271_LUNG	1	1	0.0549	FALSE	89	26	1	44	0	FALSE	ACH-000890
SW1271_LUNG	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SW1271_LUNG	1	1	0.0549	TRUE	0	0	0	434	0	FALSE	ACH-000890
SW1271_LUNG	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SW1271_LUNG	1	1	0.0549	TRUE	0	0	0	434	0	FALSE	ACH-000890
SW1271_LUNG	AP003900.6--AC008132.1	1	14	AP003900.6	2187	chr21:11172043:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	5	0	0.75	1	0.011	0.1537	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1271_LUNG	0.75	1	0.1647	TRUE	0	0	0	12	0	TRUE	ACH-000890
SW1271_LUNG	IGFBP4--NPM1	4	2	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	1078	1	0.01	0.86	0.0439	0.022	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	SW1271_LUNG	0.01	0.86	0.0659	FALSE	0	0	0	38	0	FALSE	ACH-000890
SW1271_LUNG	MT-ND6--MT-TE	4	1	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0439	0.011	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1271_LUNG	0.83	1	0.0549	FALSE	499	1288	110	792	0	FALSE	ACH-000890
SW1271_LUNG	NRP1--PARD3	4	1	NRP1	4012	chr10:33619636:-	PARD3	59992	chr10:34606266:-	ONLY_REF_SPLICE	YES	32	144	0.14	0.03	0.0439	0.011	GTEx_FI:{Nerve=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Kidney=[count:1=pct:7.1],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Kidney_-_Cortex=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Lung=1},NRP1->chr10:33466420-33625190:-,neuropilin_1,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	SW1271_LUNG	0.03	0.14	0.0549	TRUE	0	0	0	1	0	FALSE	ACH-000890
SW1271_LUNG	AP000525.9--LA16c-60G3.6	4	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SW1271_LUNG	1	1	0.0439	TRUE	0	5	0	18	5	TRUE	ACH-000890
SW1271_LUNG	AP003900.6--AC008132.1	2	8	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.022	0.0878	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	SW1271_LUNG	0.83	1	0.1098	TRUE	0	0	0	16	0	TRUE	ACH-000890
SW1271_LUNG	RP11-96H19.1--RP11-446N19.1	2	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	1	0.83	0.91	0.022	0.0878	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW1271_LUNG	0.83	0.91	0.1098	FALSE	407	2205	196	549	0	FALSE	ACH-000890
SW1271_LUNG	RP11-96H19.1--RP11-446N19.1	2	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	1	0.91	0.91	0.022	0.0878	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW1271_LUNG	0.91	0.91	0.1098	FALSE	467	2173	244	435	0	FALSE	ACH-000890
SW1271_LUNG	RP11-96H19.1--RP11-446N19.1	2	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.022	0.0878	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW1271_LUNG	0.83	1	0.1098	FALSE	275	511	55	178	0	FALSE	ACH-000890
SW1271_LUNG	RP11-120D5.1--MID1	3	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	1	0.6	0.86	0.0329	0.0329	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SW1271_LUNG	0.6	0.86	0.0658	FALSE	16	356	14	466	0	FALSE	ACH-000890
SW1271_LUNG	AC002066.1--AC073130.1	3	0	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	SW1271_LUNG	1	1	0.0329	FALSE	0	1	1	30	0	FALSE	ACH-000890
SW1271_LUNG	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SW1271_LUNG	1	1	0.0329	TRUE	0	8	0	10	8	TRUE	ACH-000890
SW1271_LUNG	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SW1271_LUNG	1	1	0.0329	TRUE	0	0	0	434	0	FALSE	ACH-000890
SW1271_LUNG	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.022	0.0439	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW1271_LUNG	0.55	1	0.0659	FALSE	164	806	69	479	0	FALSE	ACH-000890
SW1271_LUNG	RP11-1E3.1--RP11-455B3.1	3	0	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	SW1271_LUNG	1	1	0.0329	TRUE	13	49	2	38	0	FALSE	ACH-000890
SW1271_LUNG	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	5	2	0.38	0.6	0.022	0.011	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW1271_LUNG	0.38	0.6	0.033	FALSE	8	57	1	47	0	FALSE	ACH-000890
SW1271_LUNG	PAWR--RP1-78O14.1	2	1	PAWR	13714	chr12:79990291:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	191	0	0.02	1	0.022	0.011	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	SW1271_LUNG	0.02	1	0.033	FALSE	1	1	0	4	0	FALSE	ACH-000890
SW1271_LUNG	FARS2--RP3-380B8.4	2	0	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	SW1271_LUNG	1	1	0.022	FALSE	27	82	4	18	0	FALSE	ACH-000890
SW1271_LUNG	HARS--PFDN1	2	0	HARS	2170	chr5:140070440:-	PFDN1	22597	chr5:139625642:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	HARS->chr5:140052758-140071609:-,histidyl-tRNA_synthetase,PFDN1->chr5:139624624-139682706:-,prefoldin_subunit_1	SW1271_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	LDLRAD3--CD44	2	0	LDLRAD3	5673	chr11:36120011:+	CD44	41029	chr11:35250676:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	{Klijn_CCL:Skin=1},LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	SW1271_LUNG	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	PBX3--MAPKAP1	2	0	PBX3	2279	chr9:128510902:+	MAPKAP1	46938	chr9:128206877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	SW1271_LUNG	1	1	0.022	TRUE	0	0	0	2	0	TRUE	ACH-000890
SW1271_LUNG	PICALM--SYTL2	2	0	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	SW1271_LUNG	1	1	0.022	TRUE	4	2	0	20	0	FALSE	ACH-000890
SW1271_LUNG	POLE4--RP11-355F16.1	2	0	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	SW1271_LUNG	1	1	0.022	TRUE	5	7	0	37	0	FALSE	ACH-000890
SW1271_LUNG	STX18-AS1--MSX1	2	0	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	SW1271_LUNG	1	1	0.022	TRUE	37	101	7	40	0	FALSE	ACH-000890
SW1271_LUNG	ZNF519--CHMP1A	2	0	ZNF519	2343	chr18:14124349:-	CHMP1A	27273	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Muscularis=1},ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SW1271_LUNG	1	1	0.022	TRUE	1	2	0	4	2	TRUE	ACH-000890
SW1271_LUNG	PRR16--CTD-2334D19.1	1	3	PRR16	6887	chr5:119954260:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	79	0	0.05	1	0.011	0.0329	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SW1271_LUNG	0.05	1	0.0439	FALSE	0	2	0	3	0	FALSE	ACH-000890
SW1271_LUNG	PRR16--CTD-2334D19.1	1	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	71	0	0.04	1	0.011	0.022	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SW1271_LUNG	0.04	1	0.033	FALSE	1	13	0	24	0	FALSE	ACH-000890
SW1271_LUNG	ETV6--PRR4	1	1	ETV6	1307	chr12:11803094:+	PRR4	24303	chr12:11199787:-	ONLY_REF_SPLICE	YES	10	44	0.17	0.04	0.011	0.011	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal)	SW1271_LUNG	0.04	0.17	0.022	TRUE	0	1	0	1	0	TRUE	ACH-000890
SW1271_LUNG	PBX3--MAPKAP1	1	1	PBX3	2279	chr9:128510902:+	MAPKAP1	33948	chr9:128322088:-	ONLY_REF_SPLICE	NO	77	516	0.03	0	0.011	0.011	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	SW1271_LUNG	0	0.03	0.022	FALSE	0	0	0	4	0	FALSE	ACH-000890
SW1271_LUNG	PBX3--MAPKAP1	1	1	PBX3	2279	chr9:128510902:+	MAPKAP1	31403	chr9:128348006:-	ONLY_REF_SPLICE	YES	77	628	0.03	0	0.011	0.011	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	SW1271_LUNG	0	0.03	0.022	FALSE	0	2	0	5	0	FALSE	ACH-000890
SW1271_LUNG	QKI--PACRG	1	1	QKI	7175	chr6:163876453:+	PACRG	44484	chr6:163735859:+	ONLY_REF_SPLICE	YES	142	1	0.01	0.67	0.011	0.011	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	SW1271_LUNG	0.01	0.67	0.022	FALSE	0	0	0	3	0	FALSE	ACH-000890
SW1271_LUNG	RIC8B--DRAM1	1	1	RIC8B	11191	chr12:107237725:+	DRAM1	30592	chr12:102291641:+	ONLY_REF_SPLICE	NO	8	35	0.2	0.05	0.011	0.011	RIC8B->RIC8_guanine_nucleotide_exchange_factor_B,chr12:107168373-107283090:+,DRAM1->DNA_damage_regulated_autophagy_modulator_1,Oncogene{Bushman},chr12:102271129-102405908:+	SW1271_LUNG	0.05	0.2	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000890
SW1271_LUNG	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0.011	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SW1271_LUNG	1	1	0.022	FALSE	93	270	15	244	0	FALSE	ACH-000890
SW1271_LUNG	RP11-275N1.1--NEBL	1	1	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0.011	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	SW1271_LUNG	1	1	0.022	TRUE	0	2	0	25	2	FALSE	ACH-000890
BHY_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	127	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.31	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	1.31	FALSE	369	2501	205	193	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MET--CAV1	109	32	MET	9422	chr7:116381079:+	CAV1	32070	chr7:116166579:+	ONLY_REF_SPLICE	YES	126	221	0.53	0.39	1.1243	0.3301	{Klijn_CCL:Head-Neck=1},MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	BHY_UPPER_AERODIGESTIVE_TRACT	0.39	0.53	1.4544	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	101	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0418	0.1238	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	1.1656	TRUE	508	994	45	981	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RPS6KB1--VMP1	75	35	RPS6KB1	7326	chr17:57992064:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	11	617	0.91	0.15	0.7736	0.361	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	BHY_UPPER_AERODIGESTIVE_TRACT	0.15	0.91	1.1346	TRUE	0	8	0	9	5	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	PKD1--ABCA3	59	25	PKD1	6432	chr16:2165372:-	ABCA3	56270	chr16:2335638:-	INCL_NON_REF_SPLICE	YES	9	0	0.9	1	0.6086	0.2579	PKD1->chr16:2138711-2185899:-,polycystin_1,_transient_receptor_potential_channel_interacting,ABCA3->ATP_binding_cassette_subfamily_A_member_3,Oncogene{Bushman},chr16:2325882-2390747:-	BHY_UPPER_AERODIGESTIVE_TRACT	0.9	1	0.8665	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	61	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6292	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.6292	TRUE	519	3926	326	965	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	52	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5364	0.0516	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.588	FALSE	462	80	0	856	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	VAPA--RAB31	34	5	VAPA	1334	chr18:9914332:+	RAB31	38499	chr18:9859225:+	ONLY_REF_SPLICE	YES	104	63	0.27	0.38	0.3507	0.0516	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Adrenal_Gland=1,Whole_Blood=1},{Klijn_CCL:Lung=1,Head-Neck=1},LOCAL_REARRANGEMENT:+:[51451],VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+	BHY_UPPER_AERODIGESTIVE_TRACT	0.27	0.38	0.4023	TRUE	0	1	0	3	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	12	81	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1238	0.8355	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.9593	FALSE	369	2501	205	193	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	11	40	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1135	0.4126	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.5261	FALSE	369	2501	205	193	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	21	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2166	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.2166	FALSE	292	1546	117	613	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	13	27	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1341	0.2785	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.4126	FALSE	369	2501	205	193	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	6	52	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0.5364	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.5983	FALSE	369	2501	205	193	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	18	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1857	0.0103	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.196	FALSE	499	1288	110	792	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	17	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1754	0.0516	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.227	FALSE	462	80	0	856	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	HSP90AB1--MT-RNR2	16	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1088	0	0.02	1	0.165	0.0309	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BHY_UPPER_AERODIGESTIVE_TRACT	0.02	1	0.1959	FALSE	13	9	0	364	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	16	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.165	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.165	FALSE	369	2501	205	193	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	14	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.1444	0.0722	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BHY_UPPER_AERODIGESTIVE_TRACT	0.91	1	0.2166	FALSE	499	1288	110	792	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RPS6KB1--VMP1	7	35	RPS6KB1	7326	chr17:57992064:+	VMP1	38445	chr17:57911373:+	ONLY_REF_SPLICE	YES	11	41	0.79	0.51	0.0722	0.361	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	BHY_UPPER_AERODIGESTIVE_TRACT	0.51	0.79	0.4332	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MTAP--CDKN2B-AS1	13	4	MTAP	12211	chr9:21859424:+	CDKN2B-AS1	29730	chr9:22056251:+	ONLY_REF_SPLICE	YES	107	2	0.14	0.89	0.1341	0.0413	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	BHY_UPPER_AERODIGESTIVE_TRACT	0.14	0.89	0.1754	FALSE	0	0	0	1	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	43	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0.4435	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.4744	FALSE	369	2501	205	193	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	13	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1341	0.0309	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.165	FALSE	416	2512	207	587	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	PLXDC1--TAF13	12	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1238	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.1238	TRUE	7	10	0	216	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	11	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1135	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.1135	FALSE	369	2501	205	193	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	10	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	9	11	0.59	0.54	0.1031	0.0309	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BHY_UPPER_AERODIGESTIVE_TRACT	0.54	0.59	0.134	TRUE	267	562	48	632	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	8	11	MT-ATP6	1516	chrM:9042:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	14	9	0.58	0.68	0.0825	0.1135	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BHY_UPPER_AERODIGESTIVE_TRACT	0.58	0.68	0.196	FALSE	59	21	0	114	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	9	7	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	46	3	0.26	0.84	0.0928	0.0722	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BHY_UPPER_AERODIGESTIVE_TRACT	0.26	0.84	0.165	FALSE	59	21	0	114	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	10	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1031	0.0206	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.1237	FALSE	499	1288	110	792	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	4	25	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0413	0.2579	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BHY_UPPER_AERODIGESTIVE_TRACT	0.91	1	0.2992	FALSE	114	26	4	85	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	4	23	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0.2372	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.2785	FALSE	369	2501	205	193	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MTAP--CDKN2B-AS1	9	2	MTAP	9899	chr9:21854869:+	CDKN2B-AS1	29730	chr9:22056251:+	ONLY_REF_SPLICE	YES	65	2	0.14	0.85	0.0928	0.0206	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	BHY_UPPER_AERODIGESTIVE_TRACT	0.14	0.85	0.1134	FALSE	0	0	0	1	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	3	25	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0309	0.2579	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BHY_UPPER_AERODIGESTIVE_TRACT	0.9	1	0.2888	FALSE	114	26	4	85	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	STK3--RP11-410L14.2	8	4	STK3	29829	chr8:99538970:-	RP11-410L14.2	40104	chr8:100009194:-	ONLY_REF_SPLICE	YES	38	8	0.24	0.6	0.0825	0.0413	LOCAL_REARRANGEMENT:-:[53936],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,RP11-410L14.2->chr8:100008991-100025272:-	BHY_UPPER_AERODIGESTIVE_TRACT	0.24	0.6	0.1238	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	FGD6--USP44	8	3	FGD6	4683	chr12:95602619:-	USP44	38991	chr12:95928102:-	ONLY_REF_SPLICE	YES	45	0	0.2	1	0.0825	0.0309	FGD6->FYVE,_RhoGEF_and_PH_domain_containing_6,chr12:95470525-95611258:-,USP44->chr12:95910336-95945266:-,ubiquitin_specific_peptidase_44	BHY_UPPER_AERODIGESTIVE_TRACT	0.2	1	0.1134	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	HSP90AB1--MT-RNR2	8	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1114	0	0.01	1	0.0825	0.0206	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BHY_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.1031	FALSE	13	9	0	364	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	8	1	MT-ND1	1297	chrM:3603:+	MT-RNR2	5502	chrM:2216:+	INCL_NON_REF_SPLICE	YES	5	7683	0.64	0	0.0825	0.0103	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BHY_UPPER_AERODIGESTIVE_TRACT	0	0.64	0.0928	FALSE	120	26	5	87	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	8	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0825	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0825	FALSE	183	104	9	328	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	8	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0825	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0825	TRUE	465	1949	224	605	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	F3--MT-CO1	7	1	F3	1178	chr1:95007179:-	MT-CO1	11589	chrM:6428:+	INCL_NON_REF_SPLICE	YES	1937	13427	0	0	0.0722	0.0103	F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BHY_UPPER_AERODIGESTIVE_TRACT	0	0	0.0825	FALSE	0	0	0	1	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	7	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0722	FALSE	183	104	9	328	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0722	FALSE	462	80	0	856	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	7	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0722	FALSE	369	2501	205	193	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RP11-97E7.1--FOXRED1	7	0	RP11-97E7.1	2311	chr4:172474370:-	FOXRED1	8526	chr11:126142474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0	GTEx_FI:{Brain=[count:5=pct:0.8],Spleen=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Liver=[count:1=pct:0.8]},RP11-97E7.1->chr4:172474151-172485418:-,FOXRED1->FAD-dependent_oxidoreductase_domain_containing_1,chr11:126138950-126148026:+	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0722	TRUE	5	3	0	5	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	5	7	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	47	3	0.2	0.8	0.0516	0.0722	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BHY_UPPER_AERODIGESTIVE_TRACT	0.2	0.8	0.1238	FALSE	59	21	0	114	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	10	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0413	0.1031	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BHY_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.1444	FALSE	499	1288	110	792	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	6	2	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0.0206	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0825	FALSE	369	2501	205	193	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	P4HB--MT-ATP6	6	2	P4HB	9680	chr17:79801744:-	MT-ATP6	13790	chrM:8927:+	INCL_NON_REF_SPLICE	YES	831	7629	0.01	0	0.0619	0.0206	P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BHY_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0825	FALSE	0	2	0	2	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0619	FALSE	369	2501	205	193	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	6	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0619	TRUE	0	0	0	434	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RPS6KB1--VMP1	2	16	RPS6KB1	5427	chr17:57990165:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	21	617	0.46	0.03	0.0206	0.165	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	BHY_UPPER_AERODIGESTIVE_TRACT	0.03	0.46	0.1856	TRUE	0	5	0	6	5	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MAGI3--SYCP1	5	3	MAGI3	1601	chr1:113933971:+	SYCP1	63966	chr1:115537319:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0516	0.0309	MAGI3->chr1:113933371-114228545:+,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_3,SYCP1->chr1:115397424-115537991:+,synaptonemal_complex_protein_1	BHY_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.0825	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0.0722	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.1135	FALSE	462	80	0	856	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RPS6KB1--VMP1	5	3	RPS6KB1	4306	chr17:57987972:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	29	617	0.22	0.01	0.0516	0.0309	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	BHY_UPPER_AERODIGESTIVE_TRACT	0.01	0.22	0.0825	FALSE	0	2	1	6	1	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	APP--MT-ND2	5	2	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	879	3389	0.01	0	0.0516	0.0206	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	BHY_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0722	FALSE	0	1	0	51	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	5	1	MT-ND1	1272	chrM:3578:+	MT-RNR2	5546	chrM:2260:+	INCL_NON_REF_SPLICE	YES	4	7522	0.6	0	0.0516	0.0103	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BHY_UPPER_AERODIGESTIVE_TRACT	0	0.6	0.0619	FALSE	120	26	5	87	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	5	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0516	FALSE	182	97	9	327	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	5	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0516	FALSE	183	104	9	328	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	3	8	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	45	2	0.2	0.85	0.0309	0.0825	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BHY_UPPER_AERODIGESTIVE_TRACT	0.2	0.85	0.1134	FALSE	59	21	0	114	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	3	8	MT-ATP6	1174	chrM:8700:+	MT-CO2	4889	chrM:7793:+	INCL_NON_REF_SPLICE	YES	50	3	0.18	0.79	0.0309	0.0825	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BHY_UPPER_AERODIGESTIVE_TRACT	0.18	0.79	0.1134	FALSE	59	21	0	114	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	4	4	MT-ND1	1303	chrM:3609:+	MT-RNR2	5007	chrM:1721:+	INCL_NON_REF_SPLICE	YES	6	0	0.57	1	0.0413	0.0413	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BHY_UPPER_AERODIGESTIVE_TRACT	0.57	1	0.0826	FALSE	114	26	4	85	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	5	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0516	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0516	FALSE	125	705	46	456	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	5	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0516	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0516	FALSE	515	4851	409	746	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	3	6	MT-ND1	1469	chrM:3775:+	MT-RNR2	4996	chrM:1710:+	INCL_NON_REF_SPLICE	YES	39	0	0.19	1	0.0309	0.0619	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BHY_UPPER_AERODIGESTIVE_TRACT	0.19	1	0.0928	FALSE	114	26	4	85	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	FGD6--USP44	4	1	FGD6	1258	chr12:95611001:-	USP44	38991	chr12:95928102:-	ONLY_REF_SPLICE	YES	16	0	0.24	1	0.0413	0.0103	FGD6->FYVE,_RhoGEF_and_PH_domain_containing_6,chr12:95470525-95611258:-,USP44->chr12:95910336-95945266:-,ubiquitin_specific_peptidase_44	BHY_UPPER_AERODIGESTIVE_TRACT	0.24	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	4	1	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	31	8	0.14	0.38	0.0413	0.0103	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BHY_UPPER_AERODIGESTIVE_TRACT	0.14	0.38	0.0516	FALSE	59	21	0	114	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	20	9	0.2	0.36	0.0413	0.0103	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BHY_UPPER_AERODIGESTIVE_TRACT	0.2	0.36	0.0516	FALSE	59	21	0	114	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	4	1	MT-ND1	1227	chrM:3533:+	MT-RNR2	5001	chrM:1715:+	INCL_NON_REF_SPLICE	NO	4	0	0.56	1	0.0413	0.0103	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BHY_UPPER_AERODIGESTIVE_TRACT	0.56	1	0.0516	FALSE	114	26	4	85	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MTAP--CDKN2B-AS1	4	1	MTAP	12211	chr9:21859424:+	CDKN2B-AS1	33636	chr9:22063943:+	ONLY_REF_SPLICE	YES	107	3	0.04	0.62	0.0413	0.0103	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	BHY_UPPER_AERODIGESTIVE_TRACT	0.04	0.62	0.0516	FALSE	0	2	0	2	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	4	MT-ATP6	1568	chrM:9094:+	MT-CO1	5184	chrM:6406:+	INCL_NON_REF_SPLICE	YES	1158	13827	0.01	0	0.0309	0.0413	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BHY_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0722	FALSE	183	104	9	328	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	3	4	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	32	3	0.18	0.7	0.0309	0.0413	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BHY_UPPER_AERODIGESTIVE_TRACT	0.18	0.7	0.0722	FALSE	59	21	0	114	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	3	4	MT-ATP6	1123	chrM:8649:+	MT-CO2	4811	chrM:7715:+	INCL_NON_REF_SPLICE	YES	32	2	0.18	0.78	0.0309	0.0413	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	BHY_UPPER_AERODIGESTIVE_TRACT	0.18	0.78	0.0722	FALSE	59	21	0	114	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0413	FALSE	369	2501	205	193	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RP11-1L12.3--SLC5A12	3	4	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0.0413	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0722	TRUE	3	101	0	60	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RP11-476K15.1--CTD-2015H3.2	3	4	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0309	0.0413	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	BHY_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.0722	FALSE	0	46	0	73	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	TXNRD1--CHST11	4	0	TXNRD1	27532	chr12:104733051:+	CHST11	40027	chr12:105150727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0413	TRUE	0	0	0	2	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	3	2	MT-ND1	1246	chrM:3552:+	MT-RNR2	5019	chrM:1733:+	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0309	0.0206	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BHY_UPPER_AERODIGESTIVE_TRACT	0.62	1	0.0515	FALSE	114	26	4	85	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	3	2	MT-ND1	1726	chrM:4032:+	MT-RNR2	5683	chrM:2397:+	INCL_NON_REF_SPLICE	YES	330	8830	0.01	0	0.0309	0.0206	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BHY_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0515	FALSE	120	26	5	87	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	3	1	MT-ND1	1264	chrM:3570:+	MT-RNR2	5687	chrM:2401:+	INCL_NON_REF_SPLICE	YES	3	8996	0.57	0	0.0309	0.0103	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BHY_UPPER_AERODIGESTIVE_TRACT	0	0.57	0.0412	FALSE	120	26	5	87	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	VTI1A--RP11-57H14.3	3	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	10	0	0.29	1	0.0309	0.0103	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	BHY_UPPER_AERODIGESTIVE_TRACT	0.29	1	0.0412	FALSE	272	151	14	158	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0309	FALSE	183	104	9	328	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0309	FALSE	183	104	9	328	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0309	FALSE	183	104	9	328	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	0	MT-ATP6	1136	chrM:8662:+	MT-CO1	5337	chrM:6559:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0309	FALSE	183	104	9	328	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0309	FALSE	499	1288	110	792	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--MID1	3	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0309	FALSE	16	356	14	466	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	C10orf54--PSAP	2	1	C10orf54	1141	chr10:73533115:-	PSAP	16367	chr10:73594262:-	ONLY_REF_SPLICE	YES	157	190	0.02	0.02	0.0206	0.0103	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_REARRANGEMENT:-:[42800],C10orf54->chr10:73507316-73533255:-,chromosome_10_open_reading_frame_54,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin	BHY_UPPER_AERODIGESTIVE_TRACT	0.02	0.02	0.0309	TRUE	1	0	0	1	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	24	0	0.11	1	0.0206	0.0103	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BHY_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.0309	FALSE	164	806	69	479	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	ZBTB1--RTN1	2	1	ZBTB1	2235	chr14:64971664:+	RTN1	16392	chr14:60213199:-	ONLY_REF_SPLICE	YES	7	1	0.3	0.75	0.0206	0.0103	ZBTB1->chr14:64970430-65000408:+,zinc_finger_and_BTB_domain_containing_1,RTN1->chr14:60062694-60337684:-,reticulon_1	BHY_UPPER_AERODIGESTIVE_TRACT	0.3	0.75	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	ALG14--RP11-57H12.6	2	0	ALG14	2335	chr1:95530422:-	RP11-57H12.6	20046	chr1:95609447:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	LOCAL_INVERSION:-:+:[44978],ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-,RP11-57H12.6->chr1:95583479-95712781:+	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	KLF7--AC007879.2	2	0	KLF7	2801	chr2:208030191:-	AC007879.2	22964	chr2:208051712:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	LOCAL_REARRANGEMENT:-:[19450],KLF7->Kruppel-like_factor_7_(ubiquitous),chr2:207938861-208031991:-,AC007879.2->chr2:208051441-208100790:-	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MAGI3--TSHB	2	0	MAGI3	1601	chr1:113933971:+	TSHB	35554	chr1:115576594:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	MAGI3->chr1:113933371-114228545:+,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_3,TSHB->chr1:115572415-115576941:+,thyroid_stimulating_hormone_beta	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	PISD--YWHAH	2	0	PISD	3545	chr22:32044087:-	YWHAH	24267	chr22:32352126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GTEx_v2:{count=2;pct=0.02%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Caudate_(basal_ganglia)=1},PISD->chr22:32014477-32058418:-,phosphatidylserine_decarboxylase,YWHAH->chr22:32340447-32353590:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_eta	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0206	TRUE	0	2	0	2	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RAB27A--NDUFAF7	2	0	RAB27A	4005	chr15:55581914:-	NDUFAF7	27658	chr2:37471006:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	RAB27A->RAB27A,_member_RAS_oncogene_family,chr15:55495164-55611311:-,NDUFAF7->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_7,chr2:37458774-37480546:+	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	RP11-681L8.1--STPG2	2	0	RP11-681L8.1	2417	chr4:98493799:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	BHY_UPPER_AERODIGESTIVE_TRACT	1	1	0.0206	TRUE	0	2	0	5	2	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	MAGI3--TSHB	1	1	MAGI3	1601	chr1:113933971:+	TSHB	34943	chr1:115575983:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0103	0.0103	MAGI3->chr1:113933371-114228545:+,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_3,TSHB->chr1:115572415-115576941:+,thyroid_stimulating_hormone_beta	BHY_UPPER_AERODIGESTIVE_TRACT	0.5	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	PEX16--UBR4	1	1	PEX16	5994	chr11:45935370:-	UBR4	57359	chr1:19468271:-	ONLY_REF_SPLICE	YES	36	39	0.05	0.05	0.0103	0.0103	PEX16->chr11:45931220-45940363:-,peroxisomal_biogenesis_factor_16,UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4	BHY_UPPER_AERODIGESTIVE_TRACT	0.05	0.05	0.0206	TRUE	0	0	0	1	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	PIGT--ANXA1	1	1	PIGT	1618	chr20:44045334:+	ANXA1	14561	chr9:75773438:+	ONLY_REF_SPLICE	YES	137	43	0.01	0.04	0.0103	0.0103	PIGT->chr20:44044717-44054884:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_T,ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+	BHY_UPPER_AERODIGESTIVE_TRACT	0.01	0.04	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000548
BHY_UPPER_AERODIGESTIVE_TRACT	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	24436	chr10:114650725:+	ONLY_REF_SPLICE	NO	10	0	0.17	1	0.0103	0.0103	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	BHY_UPPER_AERODIGESTIVE_TRACT	0.17	1	0.0206	FALSE	21	3	0	16	0	FALSE	ACH-000548
NCIH1975_LUNG	PAK4--SLC24A4	98	53	PAK4	1150	chr19:39616559:+	SLC24A4	24735	chr14:92900256:+	ONLY_REF_SPLICE	YES	56	0	0.73	1	1.1372	0.615	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,SLC24A4->chr14:92788925-92962596:+,solute_carrier_family_24_member_4	NCIH1975_LUNG	0.73	1	1.7522	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	TIMM23B--LINC00843	74	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8587	0.3481	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1975_LUNG	1	1	1.2068	TRUE	508	994	45	981	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-TA--MT-TN	53	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.615	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1975_LUNG	1	1	0.615	FALSE	369	2501	205	193	0	FALSE	ACH-000587
NCIH1975_LUNG	TIMM23--RP11-464F9.1	46	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	329	4	0.13	0.92	0.5338	0.0232	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1975_LUNG	0.13	0.92	0.557	TRUE	519	3926	326	965	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-TA--MT-TC	39	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4526	0.0696	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1975_LUNG	1	1	0.5222	FALSE	462	80	0	856	0	FALSE	ACH-000587
NCIH1975_LUNG	NPM1P24--SET	33	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3829	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1975_LUNG	1	1	0.3829	TRUE	0	0	0	434	0	FALSE	ACH-000587
NCIH1975_LUNG	MAMLD1--CD99L2	26	4	MAMLD1	5270	chrX:149613878:+	CD99L2	26537	chrX:149963959:-	ONLY_REF_SPLICE	YES	3	75	0.91	0.29	0.3017	0.0464	MAMLD1->chrX:149529689-149682448:+,mastermind_like_domain_containing_1,CD99L2->CD99_molecule_like_2,chrX:149934810-150067289:-	NCIH1975_LUNG	0.29	0.91	0.3481	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	RP11-123O10.4--GRIP1	18	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2089	0.0348	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1975_LUNG	1	1	0.2437	FALSE	416	2512	207	587	0	FALSE	ACH-000587
NCIH1975_LUNG	KHDRBS1--HLA-C	18	0	KHDRBS1	4802	chr1:32498799:+	HLA-C	19309	chr6:31237305:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2089	0	KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+,HLA-C->chr6:31236526-31239907:-,major_histocompatibility_complex,_class_I,_C	NCIH1975_LUNG	1	1	0.2089	FALSE	0	0	0	6	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-ND6--MT-TE	17	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.1973	0.0348	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1975_LUNG	0.91	1	0.2321	FALSE	499	1288	110	792	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-TA--MT-TC	15	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1741	0.0696	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1975_LUNG	1	1	0.2437	FALSE	462	80	0	856	0	FALSE	ACH-000587
NCIH1975_LUNG	OR51S1--TP53I11	16	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1857	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH1975_LUNG	1	1	0.1857	TRUE	402	216	10	229	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-ND6--MT-TE	14	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.1625	0.0812	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1975_LUNG	0.81	1	0.2437	FALSE	499	1288	110	792	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-TA--MT-TN	6	24	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0696	0.2785	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1975_LUNG	1	1	0.3481	FALSE	369	2501	205	193	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-TA--MT-TN	5	27	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0.3133	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1975_LUNG	1	1	0.3713	FALSE	369	2501	205	193	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-ATP6--MT-CO1	10	5	MT-ATP6	1153	chrM:8679:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	10953	16850	0	0	0.116	0.058	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1975_LUNG	0	0	0.174	FALSE	183	104	9	328	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-ND6--MT-TE	10	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.116	0.0348	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1975_LUNG	0.87	1	0.1508	FALSE	499	1288	110	792	0	FALSE	ACH-000587
NCIH1975_LUNG	RP11-96H19.1--RP11-446N19.1	10	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	2	0.87	0.87	0.116	0.0348	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1975_LUNG	0.87	0.87	0.1508	FALSE	515	4851	409	746	0	FALSE	ACH-000587
NCIH1975_LUNG	NIPA2--POLA1	9	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1044	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	NCIH1975_LUNG	1	1	0.1044	TRUE	46	1352	75	139	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-ATP6--MT-CO1	8	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9301	19351	0	0	0.0928	0.0348	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1975_LUNG	0	0	0.1276	FALSE	183	104	9	328	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-TA--MT-TN	3	23	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0.2669	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1975_LUNG	1	1	0.3017	FALSE	369	2501	205	193	0	FALSE	ACH-000587
NCIH1975_LUNG	ANO6--RP11-386G11.5	7	4	ANO6	1405	chr12:45610174:+	RP11-386G11.5	37478	chr12:49403092:+	ONLY_REF_SPLICE	YES	80	4	0.12	0.73	0.0812	0.0464	ANO6->anoctamin_6,chr12:45609770-45834187:+,RP11-386G11.5->chr12:49392150-49412988:+	NCIH1975_LUNG	0.12	0.73	0.1276	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	MT-TA--MT-TN	8	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0928	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1975_LUNG	1	1	0.0928	FALSE	369	2501	205	193	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-TA--MT-TN	6	8	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0696	0.0928	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1975_LUNG	1	1	0.1624	FALSE	369	2501	205	193	0	FALSE	ACH-000587
NCIH1975_LUNG	JSRP1--RPS28	7	3	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.83	0.0812	0.0348	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH1975_LUNG	0.83	1	0.116	TRUE	0	1	0	84	1	FALSE	ACH-000587
NCIH1975_LUNG	MT-ATP6--MT-CO1	6	5	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11397	19269	0	0	0.0696	0.058	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1975_LUNG	0	0	0.1276	FALSE	183	104	9	328	0	FALSE	ACH-000587
NCIH1975_LUNG	RP11-96H19.1--RP11-446N19.1	6	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0696	0.0464	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1975_LUNG	0.83	1	0.116	FALSE	407	2205	196	549	0	FALSE	ACH-000587
NCIH1975_LUNG	SLC9A7--OGT	6	3	SLC9A7	2551	chrX:46541771:-	OGT	34287	chrX:70775804:+	ONLY_REF_SPLICE	YES	47	209	0.16	0.04	0.0696	0.0348	{Klijn_CCL:Lung=1},SLC9A7->chrX:46464753-46618490:-,solute_carrier_family_9_member_A7,OGT->O-linked_N-acetylglucosamine_(GlcNAc)_transferase,chrX:70752933-70795747:+	NCIH1975_LUNG	0.04	0.16	0.1044	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	ZNF404--CACNA1A	6	3	ZNF404	2614	chr19:44388108:-	CACNA1A	13730	chr19:13630317:-	ONLY_REF_SPLICE	YES	5	0	0.64	1	0.0696	0.0348	ZNF404->chr19:44376515-44405537:-,zinc_finger_protein_404,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	NCIH1975_LUNG	0.64	1	0.1044	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	ZNF595--PIGG	6	3	ZNF595	1207	chr4:53385:+	PIGG	19580	chr4:509762:+	ONLY_REF_SPLICE	YES	22	112	0.29	0.07	0.0696	0.0348	{Klijn_CCL:Lung=1},ZNF595->chr4:53179-88099:+,zinc_finger_protein_595,PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G	NCIH1975_LUNG	0.07	0.29	0.1044	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	MT-ND5--MT-CO3	3	14	MT-ND5	2797	chrM:14133:+	MT-CO3	5818	chrM:9212:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0.1625	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH1975_LUNG	1	1	0.1973	FALSE	0	15	2	17	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-ND6--MT-TE	4	10	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.74	1	0.0464	0.116	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1975_LUNG	0.74	1	0.1624	FALSE	499	1288	110	792	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-TA--MT-TC	4	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0.0928	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1975_LUNG	1	1	0.1392	FALSE	462	80	0	856	0	FALSE	ACH-000587
NCIH1975_LUNG	ANO6--RP11-386G11.5	4	7	ANO6	2511	chr12:45622056:+	RP11-386G11.5	37478	chr12:49403092:+	ONLY_REF_SPLICE	YES	81	4	0.12	0.73	0.0464	0.0812	ANO6->anoctamin_6,chr12:45609770-45834187:+,RP11-386G11.5->chr12:49392150-49412988:+	NCIH1975_LUNG	0.12	0.73	0.1276	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	ANO6--RP11-386G11.5	5	3	ANO6	1405	chr12:45610174:+	RP11-386G11.5	39392	chr12:49412019:+	ONLY_REF_SPLICE	YES	80	7	0.09	0.53	0.058	0.0348	ANO6->anoctamin_6,chr12:45609770-45834187:+,RP11-386G11.5->chr12:49392150-49412988:+	NCIH1975_LUNG	0.09	0.53	0.0928	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	PAK4--SLC24A4	1	19	PAK4	1150	chr19:39616559:+	SLC24A4	26887	chr14:92908433:+	ONLY_REF_SPLICE	YES	56	8	0.26	0.71	0.0116	0.2205	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,SLC24A4->chr14:92788925-92962596:+,solute_carrier_family_24_member_4	NCIH1975_LUNG	0.26	0.71	0.2321	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	ALDOA--MT-ND4	5	1	ALDOA	9101	chr16:30078873:+	MT-ND4	15441	chrM:11194:+	INCL_NON_REF_SPLICE	YES	6394	13710	0	0	0.058	0.0116	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1975_LUNG	0	0	0.0696	FALSE	0	0	0	6	0	FALSE	ACH-000587
NCIH1975_LUNG	ANO6--RP11-386G11.5	4	5	ANO6	2511	chr12:45622056:+	RP11-386G11.5	39392	chr12:49412019:+	ONLY_REF_SPLICE	YES	81	7	0.1	0.56	0.0464	0.058	ANO6->anoctamin_6,chr12:45609770-45834187:+,RP11-386G11.5->chr12:49392150-49412988:+	NCIH1975_LUNG	0.1	0.56	0.1044	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	MT-TA--MT-TC	5	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0.0116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1975_LUNG	1	1	0.0696	FALSE	462	80	0	856	0	FALSE	ACH-000587
NCIH1975_LUNG	ZNF404--CACNA1A	5	1	ZNF404	2614	chr19:44388108:-	CACNA1A	15537	chr19:13617039:-	INCL_NON_REF_SPLICE	YES	5	0	0.55	1	0.058	0.0116	ZNF404->chr19:44376515-44405537:-,zinc_finger_protein_404,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	NCIH1975_LUNG	0.55	1	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	EIF1--PPIA	5	0	EIF1	1107	chr17:39845243:+	PPIA	7809	chr7:44836303:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	NCIH1975_LUNG	1	1	0.058	TRUE	0	0	0	7	0	TRUE	ACH-000587
NCIH1975_LUNG	MT-ATP6--MT-CO1	3	8	MT-ATP6	1303	chrM:8829:+	MT-CO1	5135	chrM:6357:+	INCL_NON_REF_SPLICE	YES	15154	16941	0	0	0.0348	0.0928	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1975_LUNG	0	0	0.1276	FALSE	183	104	9	328	0	FALSE	ACH-000587
NCIH1975_LUNG	AC005540.3--LDHA	4	2	AC005540.3	2138	chr2:191745648:-	LDHA	5439	chr11:18416110:+	INCL_NON_REF_SPLICE	YES	1	7	0.86	0.46	0.0464	0.0232	AC005540.3->chr2:191745523-191746785:-,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	NCIH1975_LUNG	0.46	0.86	0.0696	TRUE	0	0	0	3	0	TRUE	ACH-000587
NCIH1975_LUNG	ALDOA--MT-ND4	4	2	ALDOA	9161	chr16:30078933:+	MT-ND4	15475	chrM:11228:+	INCL_NON_REF_SPLICE	YES	5413	13426	0	0	0.0464	0.0232	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1975_LUNG	0	0	0.0696	FALSE	0	0	0	6	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-TA--MT-TC	3	6	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0.0696	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1975_LUNG	1	1	0.1044	FALSE	462	80	0	856	0	FALSE	ACH-000587
NCIH1975_LUNG	ALDOA--MT-ND4	4	1	ALDOA	9177	chr16:30078949:+	MT-ND4	15490	chrM:11243:+	INCL_NON_REF_SPLICE	YES	5160	13285	0	0	0.0464	0.0116	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1975_LUNG	0	0	0.058	FALSE	0	0	0	6	0	FALSE	ACH-000587
NCIH1975_LUNG	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	11	1	0.31	0.0464	0.0116	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1975_LUNG	0.31	1	0.058	TRUE	465	1949	224	605	0	FALSE	ACH-000587
NCIH1975_LUNG	ZNF283--NUMB	4	1	ZNF283	6617	chr19:44341331:+	NUMB	21892	chr14:73876776:-	ONLY_REF_SPLICE	YES	18	10	0.22	0.33	0.0464	0.0116	ZNF283->chr19:44331444-44353307:+,zinc_finger_protein_283,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	NCIH1975_LUNG	0.22	0.33	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	MT-TA--MT-TN	4	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1975_LUNG	1	1	0.0464	FALSE	369	2501	205	193	0	FALSE	ACH-000587
NCIH1975_LUNG	RNF130--RASGEF1C	4	0	RNF130	2858	chr5:179467453:-	RASGEF1C	32208	chr5:179555610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0464	0	LOCAL_REARRANGEMENT:-:[28677],RNF130->chr5:179338651-179499118:-,ring_finger_protein_130,RASGEF1C->RasGEF_domain_family_member_1C,chr5:179527795-179636153:-	NCIH1975_LUNG	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	JSRP1--RPS28	3	3	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.75	0.0348	0.0348	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH1975_LUNG	0.75	1	0.0696	TRUE	0	1	0	84	1	FALSE	ACH-000587
NCIH1975_LUNG	MT-ATP6--MT-CO1	3	3	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	10793	17727	0	0	0.0348	0.0348	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1975_LUNG	0	0	0.0696	FALSE	183	104	9	328	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-ND6--MT-TE	3	3	MT-ND6	1198	chrM:14476:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	5	0	0.55	1	0.0348	0.0348	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1975_LUNG	0.55	1	0.0696	FALSE	499	1288	110	792	0	FALSE	ACH-000587
NCIH1975_LUNG	JSRP1--RPS28	3	2	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.71	0.0348	0.0232	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH1975_LUNG	0.71	1	0.058	TRUE	0	1	0	84	1	FALSE	ACH-000587
NCIH1975_LUNG	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.62	0.0348	0.0232	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1975_LUNG	0.62	1	0.058	TRUE	458	1351	185	561	0	FALSE	ACH-000587
NCIH1975_LUNG	ANPEP--MT-ND4L	3	1	ANPEP	16060	chr15:90328379:-	MT-ND4L	19321	chrM:10471:+	INCL_NON_REF_SPLICE	YES	210	0	0.02	1	0.0348	0.0116	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1975_LUNG	0.02	1	0.0464	FALSE	0	1	0	16	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1975_LUNG	1	1	0.0348	FALSE	183	104	9	328	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1975_LUNG	1	1	0.0348	FALSE	499	1288	110	792	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-TA--MT-TN	3	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1975_LUNG	1	1	0.0348	FALSE	369	2501	205	193	0	FALSE	ACH-000587
NCIH1975_LUNG	MT-TA--MT-TN	3	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1975_LUNG	1	1	0.0348	FALSE	369	2501	205	193	0	FALSE	ACH-000587
NCIH1975_LUNG	TIMM23B--LINC00843	3	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1975_LUNG	1	1	0.0348	TRUE	62	24	1	171	0	FALSE	ACH-000587
NCIH1975_LUNG	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0116	0.058	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1975_LUNG	0.86	1	0.0696	FALSE	192	492	57	212	0	FALSE	ACH-000587
NCIH1975_LUNG	AP000350.4--RPS15A	2	0	AP000350.4	3772	chr22:24236613:-	RPS15A	8037	chr16:18800441:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	AP000350.4->chr22:24236613-24241117:-,RPS15A->chr16:18792617-18801705:-,ribosomal_protein_S15a	NCIH1975_LUNG	1	1	0.0232	TRUE	0	0	0	2	0	TRUE	ACH-000587
NCIH1975_LUNG	GAPDH--ACTB	2	0	GAPDH	1643	chr12:6643735:+	ACTB	12775	chr7:5569294:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx&tcga_normals:6/3694=0.16%,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH1975_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	HDDC2--RNF146	2	0	HDDC2	3774	chr6:125619860:-	RNF146	20433	chr6:127601376:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx&tcga_normals:1/3694=0.03%,HDDC2->HD_domain_containing_2,chr6:125541108-125623282:-,RNF146->chr6:127587755-127609712:+,ring_finger_protein_146	NCIH1975_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1975_LUNG	1	1	0.0232	FALSE	292	1546	117	613	0	FALSE	ACH-000587
NCIH1975_LUNG	NRIP1--AF127936.7	2	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1975_LUNG	1	1	0.0232	FALSE	164	806	69	479	0	FALSE	ACH-000587
NCIH1975_LUNG	PAK4--SLC24A4	1	4	PAK4	1110	chr19:39616519:+	SLC24A4	24735	chr14:92900256:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0116	0.0464	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,SLC24A4->chr14:92788925-92962596:+,solute_carrier_family_24_member_4	NCIH1975_LUNG	0.71	1	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	SLC25A13--SHFM1	2	0	SLC25A13	1206	chr7:95951254:-	SHFM1	29567	chr7:96324203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Spleen=1},SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	NCIH1975_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	TMEM182--TPD52L2	2	0	TMEM182	1106	chr2:103353472:+	TPD52L2	21463	chr20:62514072:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TMEM182->chr2:103353367-103460352:+,transmembrane_protein_182,TPD52L2->chr20:62496596-62522898:+,tumor_protein_D52_like_2	NCIH1975_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	UBAP2--DCAF12	2	0	UBAP2	1125	chr9:34048823:-	DCAF12	39988	chr9:34107563:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx_v2:{count=2;pct=0.02%;dist=Breast_-_Mammary_Tissue=1,Testis=1},LOCAL_REARRANGEMENT:-:[37438],UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,DCAF12->DDB1_and_CUL4_associated_factor_12,chr9:34086385-34127397:-	NCIH1975_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000587
NCIH1975_LUNG	STK24--RNF113B	1	3	STK24	5361	chr13:99171497:-	RNF113B	25679	chr13:98828430:-	ONLY_REF_SPLICE	YES	1	20	0.8	0.17	0.0116	0.0348	STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24,RNF113B->chr13:98828039-98829519:-,ring_finger_protein_113B	NCIH1975_LUNG	0.17	0.8	0.0464	TRUE	0	0	0	2	0	TRUE	ACH-000587
NCIH1975_LUNG	FNBP4--NUP160	1	2	FNBP4	12839	chr11:47753669:-	NUP160	46224	chr11:47823482:-	ONLY_REF_SPLICE	YES	54	114	0.05	0.03	0.0116	0.0232	LOCAL_REARRANGEMENT:-:[10644],FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,NUP160->chr11:47799639-47870107:-,nucleoporin_160kDa	NCIH1975_LUNG	0.03	0.05	0.0348	TRUE	0	0	0	1	0	FALSE	ACH-000587
NCIH1975_LUNG	LMCD1--ATP2B2	1	2	LMCD1	4692	chr3:8579126:+	ATP2B2	20715	chr3:10444032:-	ONLY_REF_SPLICE	YES	83	0	0.03	1	0.0116	0.0232	LMCD1->LIM_and_cysteine_rich_domains_1,chr3:8543393-8609805:+,ATP2B2->ATPase_plasma_membrane_Ca2+_transporting_2,chr3:10365707-10749716:-	NCIH1975_LUNG	0.03	1	0.0348	TRUE	0	0	0	1	0	FALSE	ACH-000587
NCIH1975_LUNG	ZNF736--CHMP1A	1	2	ZNF736	8361	chr7:63797360:+	CHMP1A	24290	chr16:89713739:-	ONLY_REF_SPLICE	YES	25	482	0.11	0.01	0.0116	0.0232	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adipose_Tissue=[count:2=pct:0.7],Breast=[count:2=pct:1.8],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=25;pct=0.29%;dist=Thyroid=4,Cells_-_Transformed_fibroblasts=3,Breast_-_Mammary_Tissue=2,Esophagus_-_Mucosa=2,Ovary=1,Pancreas=1,Lung=1,Vagina=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Colon_-_Sigmoid=1,Testis=1,Colon_-_Transverse=1},ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH1975_LUNG	0.01	0.11	0.0348	FALSE	10	14	2	10	0	FALSE	ACH-000587
NCIH1975_LUNG	C3orf52--PHLDB2	1	1	C3orf52	1211	chr3:111805392:+	PHLDB2	25870	chr3:111632166:+	ONLY_REF_SPLICE	YES	32	196	0.06	0.01	0.0116	0.0116	C3orf52->chr3:111805182-111849851:+,chromosome_3_open_reading_frame_52,PHLDB2->chr3:111451344-111695364:+,pleckstrin_homology_like_domain_family_B_member_2	NCIH1975_LUNG	0.01	0.06	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000587
NCIH1975_LUNG	CAPZA2--CAV1	1	1	CAPZA2	3371	chr7:116502704:+	CAV1	28621	chr7:116199000:+	ONLY_REF_SPLICE	YES	155	2489	0.01	0	0.0116	0.0116	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	NCIH1975_LUNG	0	0.01	0.0232	FALSE	0	1	0	2	1	FALSE	ACH-000587
NCIH1975_LUNG	EPRS--DHX9	1	1	EPRS	28124	chr1:220152760:-	DHX9	46178	chr1:182829128:+	ONLY_REF_SPLICE	NO	369	315	0.01	0.01	0.0116	0.0116	EPRS->chr1:220141943-220220000:-,glutamyl-prolyl-tRNA_synthetase,DHX9->DEAH-box_helicase_9,Oncogene{Bushman},chr1:182808504-182856886:+	NCIH1975_LUNG	0.01	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000587
NCIH1975_LUNG	PPP2R1A--PFDN5	1	1	PPP2R1A	12138	chr19:52723117:+	PFDN5	20782	chr12:53689623:+	ONLY_REF_SPLICE	NO	1897	246	0	0.01	0.0116	0.0116	PPP2R1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:52693292-52730687:+,protein_phosphatase_2_regulatory_subunit_A,_alpha,PFDN5->chr12:53689075-53693234:+,prefoldin_subunit_5	NCIH1975_LUNG	0	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000587
PC14_LUNG	ZSCAN22--CHMP2A	767	65	ZSCAN22	1096	chr19:58838480:+	CHMP2A	11518	chr19:59065603:-	ONLY_REF_SPLICE	YES	0	125	1	0.87	8.5647	0.7258	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC14_LUNG	0.87	1	9.2905	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	ZSCAN22--CHMP2A	173	32	ZSCAN22	1091	chr19:58838475:+	CHMP2A	11518	chr19:59065603:-	INCL_NON_REF_SPLICE	YES	5	125	0.98	0.62	1.9318	0.3573	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC14_LUNG	0.62	0.98	2.2891	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	FUT8--GALNT16	164	64	FUT8	12030	chr14:66028484:+	GALNT16	42140	chr14:69808398:+	ONLY_REF_SPLICE	YES	101	0	0.69	1	1.8313	0.7147	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,GALNT16->chr14:69725994-69821183:+,polypeptide_N-acetylgalactosaminyltransferase_16	PC14_LUNG	0.69	1	2.546	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	MT-TA--MT-TN	132	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.474	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC14_LUNG	1	1	1.474	FALSE	369	2501	205	193	0	FALSE	ACH-000030
PC14_LUNG	TIMM23B--LINC00843	102	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.139	0.3127	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PC14_LUNG	1	1	1.4517	TRUE	508	994	45	981	0	FALSE	ACH-000030
PC14_LUNG	TIMM23--RP11-464F9.1	66	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.737	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PC14_LUNG	1	1	0.737	TRUE	519	3926	326	965	0	FALSE	ACH-000030
PC14_LUNG	MT-TA--MT-TC	64	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7147	0.0558	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PC14_LUNG	1	1	0.7705	FALSE	462	80	0	856	0	FALSE	ACH-000030
PC14_LUNG	SHISA9--U91319.1	54	7	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	45	0	0.58	1	0.603	0.0782	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	PC14_LUNG	0.58	1	0.6812	FALSE	4	37	0	19	0	FALSE	ACH-000030
PC14_LUNG	CPSF3--ASAP2	40	7	CPSF3	8834	chr2:9576490:+	ASAP2	48165	chr2:9533611:+	ONLY_REF_SPLICE	YES	106	37	0.31	0.56	0.4467	0.0782	LOCAL_REARRANGEMENT:+:[17885],CPSF3->chr2:9563697-9613230:+,cleavage_and_polyadenylation_specific_factor_3,ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+	PC14_LUNG	0.31	0.56	0.5249	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	ZSCAN22--CHMP2A	23	66	ZSCAN22	1096	chr19:58838480:+	CHMP2A	10677	chr19:59066444:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2568	0.737	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC14_LUNG	1	1	0.9938	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO2	37	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	96	11	0.3	0.79	0.4132	0.0558	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PC14_LUNG	0.3	0.79	0.469	FALSE	59	21	0	114	0	FALSE	ACH-000030
PC14_LUNG	MT-TA--MT-TN	15	81	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1675	0.9045	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC14_LUNG	1	1	1.072	FALSE	369	2501	205	193	0	FALSE	ACH-000030
PC14_LUNG	RP11-123O10.4--GRIP1	29	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3238	0.0558	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PC14_LUNG	1	1	0.3796	FALSE	416	2512	207	587	0	FALSE	ACH-000030
PC14_LUNG	MT-ND6--MT-TE	30	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.335	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC14_LUNG	1	1	0.335	FALSE	499	1288	110	792	0	FALSE	ACH-000030
PC14_LUNG	MT-TA--MT-TN	15	50	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1675	0.5583	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC14_LUNG	1	1	0.7258	FALSE	369	2501	205	193	0	FALSE	ACH-000030
PC14_LUNG	RPN2--TTI1	25	6	RPN2	1960	chr20:35807772:+	TTI1	30304	chr20:36634799:-	ONLY_REF_SPLICE	YES	347	57	0.08	0.35	0.2792	0.067	RPN2->chr20:35806813-35870022:+,ribophorin_II,TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-	PC14_LUNG	0.08	0.35	0.3462	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	MT-TA--MT-TN	16	29	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1787	0.3238	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC14_LUNG	1	1	0.5025	FALSE	369	2501	205	193	0	FALSE	ACH-000030
PC14_LUNG	MT-TA--MT-TN	23	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2568	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC14_LUNG	1	1	0.2568	FALSE	369	2501	205	193	0	FALSE	ACH-000030
PC14_LUNG	SHISA9--CTD-2135D7.2	23	0	SHISA9	4767	chr16:13003719:+	CTD-2135D7.2	22825	chr16:14027076:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2568	0	SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,CTD-2135D7.2->chr16:14024534-14029492:-	PC14_LUNG	1	1	0.2568	TRUE	0	1	0	2	1	TRUE	ACH-000030
PC14_LUNG	EFHD1--UBR3	19	3	EFHD1	7630	chr2:233537153:+	UBR3	52132	chr2:170917589:+	ONLY_REF_SPLICE	YES	33	19	0.4	0.54	0.2122	0.0335	EFHD1->EF-hand_domain_family_member_D1,chr2:233470767-233547491:+,UBR3->chr2:170683968-170940641:+,ubiquitin_protein_ligase_E3_component_n-recognin_3_(putative)	PC14_LUNG	0.4	0.54	0.2457	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO2	17	9	MT-ATP6	1249	chrM:8775:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	128	9	0.17	0.74	0.1898	0.1005	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PC14_LUNG	0.17	0.74	0.2903	FALSE	59	21	0	114	0	FALSE	ACH-000030
PC14_LUNG	RP11-307P5.1--SASH1	17	6	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1898	0.067	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	PC14_LUNG	1	1	0.2568	TRUE	0	2	0	37	2	FALSE	ACH-000030
PC14_LUNG	ZSCAN22--CHMP2A	3	61	ZSCAN22	1096	chr19:58838480:+	CHMP2A	11527	chr19:59065594:-	INCL_NON_REF_SPLICE	YES	0	117	1	0.35	0.0335	0.6812	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC14_LUNG	0.35	1	0.7147	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	RP11-96H19.1--RP11-446N19.1	16	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1787	0.0558	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PC14_LUNG	0.95	1	0.2345	FALSE	515	4851	409	746	0	FALSE	ACH-000030
PC14_LUNG	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1898	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	PC14_LUNG	1	1	0.1898	TRUE	0	0	0	518	0	FALSE	ACH-000030
PC14_LUNG	MT-TA--MT-TN	7	38	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0782	0.4243	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC14_LUNG	1	1	0.5025	FALSE	369	2501	205	193	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-RNR2	13	5	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	13166	12144	0	0	0.1452	0.0558	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PC14_LUNG	0	0	0.201	FALSE	63	17	1	58	0	FALSE	ACH-000030
PC14_LUNG	MT-ND6--MT-TE	13	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1452	0.0447	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC14_LUNG	0.94	1	0.1899	FALSE	499	1288	110	792	0	FALSE	ACH-000030
PC14_LUNG	ZSCAN22--CHMP2A	6	32	ZSCAN22	1091	chr19:58838475:+	CHMP2A	10677	chr19:59066444:-	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.067	0.3573	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC14_LUNG	0.88	1	0.4243	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	MT-TA--MT-TN	7	26	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0782	0.2903	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC14_LUNG	1	1	0.3685	FALSE	369	2501	205	193	0	FALSE	ACH-000030
PC14_LUNG	MT-ND3--MT-ATP8	13	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1452	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC14_LUNG	1	1	0.1452	FALSE	351	233	23	137	0	FALSE	ACH-000030
PC14_LUNG	MT-ND6--MT-TE	12	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.134	0.0112	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC14_LUNG	1	1	0.1452	FALSE	499	1288	110	792	0	FALSE	ACH-000030
PC14_LUNG	MT-TA--MT-TC	12	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.134	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PC14_LUNG	1	1	0.134	FALSE	462	80	0	856	0	FALSE	ACH-000030
PC14_LUNG	NRIP1--AF127936.7	11	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.1228	0.0223	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PC14_LUNG	0.93	1	0.1451	FALSE	292	1546	117	613	0	FALSE	ACH-000030
PC14_LUNG	HSP90AB1--MT-RNR2	11	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1228	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PC14_LUNG	1	1	0.1228	FALSE	13	9	0	364	0	FALSE	ACH-000030
PC14_LUNG	MT-TA--MT-TN	11	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1228	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC14_LUNG	1	1	0.1228	FALSE	369	2501	205	193	0	FALSE	ACH-000030
PC14_LUNG	HIATL1--RP11-307E17.8	10	2	HIATL1	4664	chr9:97200810:+	RP11-307E17.8	19630	chr9:97101118:+	ONLY_REF_SPLICE	YES	147	10	0.08	0.55	0.1117	0.0223	GTEx_FI:{Small_Intestine=[count:1=pct:1.8],Skin=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:+:[13603],HIATL1->chr9:97136833-97223324:+,RP11-307E17.8->chr9:97094758-97123230:+	PC14_LUNG	0.08	0.55	0.134	TRUE	3	6	0	6	0	FALSE	ACH-000030
PC14_LUNG	FUT8--GALNT16	1	36	FUT8	12030	chr14:66028484:+	GALNT16	43224	chr14:69813757:+	ONLY_REF_SPLICE	YES	101	1	0.27	0.97	0.0112	0.402	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,GALNT16->chr14:69725994-69821183:+,polypeptide_N-acetylgalactosaminyltransferase_16	PC14_LUNG	0.27	0.97	0.4132	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	MT-TA--MT-TC	9	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1005	0.0447	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PC14_LUNG	1	1	0.1452	FALSE	462	80	0	856	0	FALSE	ACH-000030
PC14_LUNG	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1117	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PC14_LUNG	1	1	0.1117	TRUE	0	0	0	434	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO2	9	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	44	5	0.21	0.71	0.1005	0.0335	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PC14_LUNG	0.21	0.71	0.134	FALSE	59	21	0	114	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-RNR2	9	2	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	12234	0	0	1	0.1005	0.0223	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PC14_LUNG	0	1	0.1228	FALSE	63	17	1	58	0	FALSE	ACH-000030
PC14_LUNG	MT-CO2--MT-ND2	9	0	MT-CO2	1320	chrM:7905:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1005	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	PC14_LUNG	1	1	0.1005	FALSE	105	46	5	21	0	FALSE	ACH-000030
PC14_LUNG	MT-ND6--MT-TE	7	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0782	0.0782	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC14_LUNG	1	1	0.1564	FALSE	499	1288	110	792	0	FALSE	ACH-000030
PC14_LUNG	MT-ND6--MT-TE	7	7	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0782	0.0782	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC14_LUNG	0.93	1	0.1564	FALSE	499	1288	110	792	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO1	8	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	12416	25646	0	0	0.0893	0.0223	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PC14_LUNG	0	0	0.1116	FALSE	183	104	9	328	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-RNR2	7	5	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	13180	12192	0	0	0.0782	0.0558	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PC14_LUNG	0	0	0.134	FALSE	63	17	1	58	0	FALSE	ACH-000030
PC14_LUNG	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0893	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PC14_LUNG	1	1	0.0893	FALSE	13	9	0	364	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO2	7	4	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	75	9	0.13	0.55	0.0782	0.0447	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PC14_LUNG	0.13	0.55	0.1229	FALSE	59	21	0	114	0	FALSE	ACH-000030
PC14_LUNG	RP11-96H19.1--RP11-446N19.1	6	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.067	0.0558	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PC14_LUNG	0.92	1	0.1228	FALSE	407	2205	196	549	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO1	6	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	14318	26020	0	0	0.067	0.0447	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PC14_LUNG	0	0	0.1117	FALSE	183	104	9	328	0	FALSE	ACH-000030
PC14_LUNG	MT-TA--MT-TN	7	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0782	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC14_LUNG	1	1	0.0782	FALSE	369	2501	205	193	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO2	6	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	44	5	0.17	0.64	0.067	0.0335	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PC14_LUNG	0.17	0.64	0.1005	FALSE	59	21	0	114	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-RNR2	6	3	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	12402	12367	0	0	0.067	0.0335	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PC14_LUNG	0	0	0.1005	FALSE	63	17	1	58	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO1	6	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	12429	26098	0	0	0.067	0.0223	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PC14_LUNG	0	0	0.0893	FALSE	183	104	9	328	0	FALSE	ACH-000030
PC14_LUNG	RP11-123O10.4--GRIP1	6	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.067	0.0223	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PC14_LUNG	0.89	1	0.0893	FALSE	93	270	15	244	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO2	5	5	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	94	8	0.1	0.56	0.0558	0.0558	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PC14_LUNG	0.1	0.56	0.1116	FALSE	59	21	0	114	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-RNR2	5	5	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	13633	12346	0	0	0.0558	0.0558	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PC14_LUNG	0	0	0.1116	FALSE	63	17	1	58	0	FALSE	ACH-000030
PC14_LUNG	MT-TA--MT-TC	5	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0.0558	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PC14_LUNG	1	1	0.1116	FALSE	462	80	0	856	0	FALSE	ACH-000030
PC14_LUNG	RP11-96H19.1--RP11-446N19.1	5	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0558	0.0558	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PC14_LUNG	0.91	1	0.1116	FALSE	467	2173	244	435	0	FALSE	ACH-000030
PC14_LUNG	ACTN4--MT-CO1	6	0	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PC14_LUNG	1	1	0.067	FALSE	0	0	0	30	0	FALSE	ACH-000030
PC14_LUNG	MT-TA--MT-TN	6	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC14_LUNG	1	1	0.067	FALSE	369	2501	205	193	0	FALSE	ACH-000030
PC14_LUNG	C15orf57--CBX3	4	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	35	69	0.24	0.14	0.0447	0.0782	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PC14_LUNG	0.14	0.24	0.1229	TRUE	267	562	48	632	0	FALSE	ACH-000030
PC14_LUNG	GALNT16--RP1-261D10.2	4	6	GALNT16	11075	chr14:69800317:+	RP1-261D10.2	26828	chr14:71778093:-	INCL_NON_REF_SPLICE	YES	0	10	1	0.5	0.0447	0.067	GALNT16->chr14:69725994-69821183:+,polypeptide_N-acetylgalactosaminyltransferase_16,RP1-261D10.2->chr14:71759442-71788531:-	PC14_LUNG	0.5	1	0.1117	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	MT-ATP6--MT-RNR2	5	2	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	11398	0	0	1	0.0558	0.0223	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PC14_LUNG	0	1	0.0781	FALSE	63	17	1	58	0	FALSE	ACH-000030
PC14_LUNG	RP11-680G10.1--GSE1	5	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.54	0.0558	0.0223	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PC14_LUNG	0.54	1	0.0781	TRUE	458	1351	185	561	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO1	3	9	MT-ATP6	1462	chrM:8988:+	MT-CO1	5224	chrM:6446:+	INCL_NON_REF_SPLICE	YES	10379	24177	0	0	0.0335	0.1005	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PC14_LUNG	0	0	0.134	FALSE	183	104	9	328	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-RNR2	4	5	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	12472	2	0	0.82	0.0447	0.0558	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PC14_LUNG	0	0.82	0.1005	FALSE	63	17	1	58	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-RNR2	4	5	MT-ATP6	1158	chrM:8684:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	14306	12499	0	0	0.0447	0.0558	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PC14_LUNG	0	0	0.1005	FALSE	63	17	1	58	0	FALSE	ACH-000030
PC14_LUNG	MT-CO2--MT-ND2	4	5	MT-CO2	1349	chrM:7934:+	MT-ND2	4908	chrM:4693:+	INCL_NON_REF_SPLICE	YES	74	11191	0.11	0	0.0447	0.0558	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	PC14_LUNG	0	0.11	0.1005	FALSE	105	46	5	21	0	FALSE	ACH-000030
PC14_LUNG	MT-CO2--MT-ND2	5	1	MT-CO2	1276	chrM:7861:+	MT-ND2	5541	chrM:5326:+	INCL_NON_REF_SPLICE	YES	225	6093	0.03	0	0.0558	0.0112	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	PC14_LUNG	0	0.03	0.067	FALSE	105	46	5	21	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO1	5	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PC14_LUNG	1	1	0.0558	FALSE	183	104	9	328	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO2	4	4	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	73	6	0.1	0.57	0.0447	0.0447	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PC14_LUNG	0.1	0.57	0.0894	FALSE	59	21	0	114	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO2	3	8	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	96	5	0.1	0.69	0.0335	0.0893	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PC14_LUNG	0.1	0.69	0.1228	FALSE	59	21	0	114	0	FALSE	ACH-000030
PC14_LUNG	MT-TA--MT-TN	5	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC14_LUNG	1	1	0.0558	FALSE	369	2501	205	193	0	FALSE	ACH-000030
PC14_LUNG	UBB--MTND2P28	5	0	UBB	2449	chr17:16285560:+	MTND2P28	5962	chr1:565033:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	UBB->chr17:16284112-16286059:+,ubiquitin_B,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	PC14_LUNG	1	1	0.0558	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	IQUB--NDUFA5	4	3	IQUB	1586	chr7:123174546:-	NDUFA5	27445	chr7:123190640:-	ONLY_REF_SPLICE	YES	0	58	1	0.11	0.0447	0.0335	LOCAL_REARRANGEMENT:-:[1920],IQUB->IQ_motif_and_ubiquitin_domain_containing,chr7:123092454-123175131:-,NDUFA5->NADH:ubiquinone_oxidoreductase_subunit_A5,chr7:123177051-123198309:-	PC14_LUNG	0.11	1	0.0782	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO1	4	3	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	13475	24280	0	0	0.0447	0.0335	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PC14_LUNG	0	0	0.0782	FALSE	183	104	9	328	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-RNR2	4	3	MT-ATP6	1125	chrM:8651:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	12421	12144	0	0	0.0447	0.0335	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PC14_LUNG	0	0	0.0782	FALSE	63	17	1	58	0	FALSE	ACH-000030
PC14_LUNG	FLNA--MT-CO2	4	2	FLNA	16638	chrX:153582028:-	MT-CO2	24780	chrM:7591:+	INCL_NON_REF_SPLICE	YES	1654	0	0	1	0.0447	0.0223	FLNA->chrX:153576892-153603006:-,filamin_A,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PC14_LUNG	0	1	0.067	FALSE	0	0	0	5	0	FALSE	ACH-000030
PC14_LUNG	HAT1--NLRP4	4	2	HAT1	4194	chr2:172782151:+	NLRP4	19127	chr19:56363382:+	ONLY_REF_SPLICE	YES	424	0	0.01	1	0.0447	0.0223	HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1,NLRP4->NLR_family,_pyrin_domain_containing_4,chr19:56347944-56393220:+	PC14_LUNG	0.01	1	0.067	FALSE	0	0	0	1	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO1	4	2	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	12323	23811	0	0	0.0447	0.0223	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PC14_LUNG	0	0	0.067	FALSE	183	104	9	328	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO1	4	2	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12217	26020	0	0	0.0447	0.0223	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PC14_LUNG	0	0	0.067	FALSE	183	104	9	328	0	FALSE	ACH-000030
PC14_LUNG	MT-ND6--MT-TE	3	6	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0335	0.067	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC14_LUNG	0.9	1	0.1005	FALSE	499	1288	110	792	0	FALSE	ACH-000030
PC14_LUNG	RP11-120D5.1--MID1	4	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	56	0.6	0.1	0.0447	0.0223	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PC14_LUNG	0.1	0.6	0.067	FALSE	16	356	14	466	0	FALSE	ACH-000030
PC14_LUNG	RP11-120D5.1--MID1	4	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	56	0.75	0.1	0.0447	0.0223	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PC14_LUNG	0.1	0.75	0.067	FALSE	0	48	1	163	0	FALSE	ACH-000030
PC14_LUNG	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	17	1	0.26	0.0447	0.0223	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PC14_LUNG	0.26	1	0.067	TRUE	465	1949	224	605	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO1	3	5	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	14318	0	0	1	0.0335	0.0558	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PC14_LUNG	0	1	0.0893	FALSE	182	97	9	327	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	11398	12685	0	0	0.0447	0.0112	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PC14_LUNG	0	0	0.0559	FALSE	63	17	1	58	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1110	chrM:8636:+	MT-RNR2	5247	chrM:2236:+	INCL_NON_REF_SPLICE	YES	12273	12463	0	0	0.0447	0.0112	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PC14_LUNG	0	0	0.0559	FALSE	63	17	1	58	0	FALSE	ACH-000030
PC14_LUNG	JUP--MT-CO3	4	0	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PC14_LUNG	1	1	0.0447	FALSE	0	0	0	33	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO1	3	4	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	13006	0	0	1	0.0335	0.0447	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PC14_LUNG	0	1	0.0782	FALSE	182	97	9	327	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO1	3	4	MT-ATP6	1153	chrM:8679:+	MT-CO1	4732	chrM:5954:+	INCL_NON_REF_SPLICE	YES	13648	0	0	1	0.0335	0.0447	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PC14_LUNG	0	1	0.0782	FALSE	182	97	9	327	0	FALSE	ACH-000030
PC14_LUNG	NRBF2--RP11-170M17.1	4	0	NRBF2	1211	chr10:64893260:+	RP11-170M17.1	11345	chr10:65750029:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	NRBF2->chr10:64893050-64914783:+,nuclear_receptor_binding_factor_2,RP11-170M17.1->chr10:65424424-65750328:+	PC14_LUNG	1	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	UBB--MTND2P28	4	0	UBB	2249	chr17:16285360:+	MTND2P28	5995	chr1:565066:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	UBB->chr17:16284112-16286059:+,ubiquitin_B,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	PC14_LUNG	1	1	0.0447	TRUE	0	0	0	2	0	TRUE	ACH-000030
PC14_LUNG	GALNT16--RP1-261D10.2	3	3	GALNT16	11075	chr14:69800317:+	RP1-261D10.2	27525	chr14:71777396:-	ONLY_REF_SPLICE	YES	0	11	1	0.35	0.0335	0.0335	GALNT16->chr14:69725994-69821183:+,polypeptide_N-acetylgalactosaminyltransferase_16,RP1-261D10.2->chr14:71759442-71788531:-	PC14_LUNG	0.35	1	0.067	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO1	3	3	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	12489	24124	0	0	0.0335	0.0335	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PC14_LUNG	0	0	0.067	FALSE	183	104	9	328	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO2	3	3	MT-ATP6	1237	chrM:8763:+	MT-CO2	4983	chrM:7887:+	INCL_NON_REF_SPLICE	YES	125	11	0.05	0.35	0.0335	0.0335	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PC14_LUNG	0.05	0.35	0.067	FALSE	59	21	0	114	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO2	3	3	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	45	5	0.12	0.55	0.0335	0.0335	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PC14_LUNG	0.12	0.55	0.067	FALSE	59	21	0	114	0	FALSE	ACH-000030
PC14_LUNG	AP1M1--FAM32A	3	2	AP1M1	6713	chr19:16319988:+	FAM32A	20588	chr19:16301331:+	ONLY_REF_SPLICE	YES	90	398	0.05	0.01	0.0335	0.0223	LOCAL_REARRANGEMENT:+:[5532],AP1M1->adaptor_related_protein_complex_1_mu_1_subunit,chr19:16308389-16346160:+,FAM32A->chr19:16296191-16302857:+,family_with_sequence_similarity_32_member_A	PC14_LUNG	0.01	0.05	0.0558	FALSE	0	0	0	1	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	11898	24096	0	0	0.0335	0.0223	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PC14_LUNG	0	0	0.0558	FALSE	183	104	9	328	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1108	chrM:8634:+	MT-CO1	4835	chrM:6057:+	INCL_NON_REF_SPLICE	YES	12217	10636	0	0	0.0335	0.0223	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PC14_LUNG	0	0	0.0558	FALSE	183	97	9	327	0	FALSE	ACH-000030
PC14_LUNG	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.28	1	0.0335	0.0223	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PC14_LUNG	0.28	1	0.0558	FALSE	125	705	46	456	0	FALSE	ACH-000030
PC14_LUNG	UBB--MTND2P28	3	2	UBB	2477	chr17:16285588:+	MTND2P28	5995	chr1:565066:+	INCL_NON_REF_SPLICE	YES	3099	0	0	1	0.0335	0.0223	UBB->chr17:16284112-16286059:+,ubiquitin_B,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	PC14_LUNG	0	1	0.0558	FALSE	0	0	0	2	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1079	chrM:8605:+	MT-CO1	5225	chrM:6447:+	INCL_NON_REF_SPLICE	YES	10051	24231	0	0	0.0335	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PC14_LUNG	0	0	0.0447	FALSE	183	104	9	328	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1121	chrM:8647:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	YES	12499	12082	0	0	0.0335	0.0112	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PC14_LUNG	0	0	0.0447	FALSE	63	17	1	58	0	FALSE	ACH-000030
PC14_LUNG	MT-CO2--MT-ND2	3	1	MT-CO2	1234	chrM:7819:+	MT-ND2	5523	chrM:5308:+	INCL_NON_REF_SPLICE	YES	179	6875	0.02	0	0.0335	0.0112	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	PC14_LUNG	0	0.02	0.0447	FALSE	105	46	5	21	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO2	3	0	MT-ATP6	1072	chrM:8598:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PC14_LUNG	1	1	0.0335	FALSE	59	21	0	114	0	FALSE	ACH-000030
PC14_LUNG	MT-ATP6--MT-CO2	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PC14_LUNG	1	1	0.0335	FALSE	59	21	0	114	0	FALSE	ACH-000030
PC14_LUNG	MT-CO2--MT-ND2	3	0	MT-CO2	1240	chrM:7825:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	PC14_LUNG	1	1	0.0335	FALSE	105	46	5	21	0	FALSE	ACH-000030
PC14_LUNG	RP11-114H23.1--RP11-114H23.2	3	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	PC14_LUNG	1	1	0.0335	FALSE	81	155	12	160	0	FALSE	ACH-000030
PC14_LUNG	SHISA9--U91319.1	1	7	SHISA9	11022	chr16:13307157:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	NO	47	0	0.15	1	0.0112	0.0782	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	PC14_LUNG	0.15	1	0.0894	FALSE	0	1	0	2	0	FALSE	ACH-000030
PC14_LUNG	GALNT16--RP1-261D10.2	2	2	GALNT16	11075	chr14:69800317:+	RP1-261D10.2	29841	chr14:71762173:-	ONLY_REF_SPLICE	YES	0	11	1	0.27	0.0223	0.0223	GALNT16->chr14:69725994-69821183:+,polypeptide_N-acetylgalactosaminyltransferase_16,RP1-261D10.2->chr14:71759442-71788531:-	PC14_LUNG	0.27	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	AP1M1--FAM32A	2	1	AP1M1	5685	chr19:16318960:+	FAM32A	20588	chr19:16301331:+	ONLY_REF_SPLICE	NO	63	398	0.05	0.01	0.0223	0.0112	LOCAL_REARRANGEMENT:+:[5532],AP1M1->adaptor_related_protein_complex_1_mu_1_subunit,chr19:16308389-16346160:+,FAM32A->chr19:16296191-16302857:+,family_with_sequence_similarity_32_member_A	PC14_LUNG	0.01	0.05	0.0335	FALSE	0	0	0	1	0	FALSE	ACH-000030
PC14_LUNG	FUT8--GALNT16	2	1	FUT8	5815	chr14:65922436:+	GALNT16	43224	chr14:69813757:+	ONLY_REF_SPLICE	YES	135	1	0.02	0.75	0.0223	0.0112	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,GALNT16->chr14:69725994-69821183:+,polypeptide_N-acetylgalactosaminyltransferase_16	PC14_LUNG	0.02	0.75	0.0335	TRUE	0	0	0	1	0	FALSE	ACH-000030
PC14_LUNG	ACTL6A--INO80D	2	0	ACTL6A	1094	chr3:179280761:+	INO80D	25534	chr2:206874518:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	HGNC_GENEFAM,ACTL6A->actin_like_6A,chr3:179280668-179306196:+,INO80D->INO80_complex_subunit_D,chr2:206858445-206951027:-	PC14_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	EFNA5--FBXL17	2	0	EFNA5	1407	chr5:107006190:-	FBXL17	22958	chr5:107356702:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Brain_-_Frontal_Cortex_(BA9)=1,Nerve_-_Tibial=1},{Klijn_CCL:Head-Neck=1,Lung=1},EFNA5->chr5:106712590-107006596:-,ephrin_A5,FBXL17->F-box_and_leucine-rich_repeat_protein_17,chr5:107194736-107717799:-	PC14_LUNG	1	1	0.0223	TRUE	2	2	0	3	0	FALSE	ACH-000030
PC14_LUNG	HIATL1--RP11-307E17.8	2	0	HIATL1	4664	chr9:97200810:+	RP11-307E17.8	20815	chr9:97121767:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_FI:{Small_Intestine=[count:1=pct:1.8],Skin=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:+:[13603],HIATL1->chr9:97136833-97223324:+,RP11-307E17.8->chr9:97094758-97123230:+	PC14_LUNG	1	1	0.0223	TRUE	0	1	0	5	1	FALSE	ACH-000030
PC14_LUNG	LARP4--TMBIM6	2	0	LARP4	2426	chr12:50794811:+	TMBIM6	41838	chr12:50146247:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	{Klijn_CCL:Urinary_Bladder=1},LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+,TMBIM6->chr12:50101508-50158717:+,transmembrane_BAX_inhibitor_motif_containing_6	PC14_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	NDUFA4L2--ITGA3	2	0	NDUFA4L2	1037	chr12:57634462:-	ITGA3	11399	chr17:48141441:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NDUFA4L2->NADH_dehydrogenase_(ubiquinone)_1_alpha_subcomplex,_4-like_2,chr12:57628686-57634498:-,ITGA3->chr17:48133332-48167845:+,integrin_subunit_alpha_3	PC14_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	RCC1--GNAS	2	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	PC14_LUNG	1	1	0.0223	TRUE	0	3	0	13	2	TRUE	ACH-000030
PC14_LUNG	RP11-307P5.1--SASH1	2	0	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	PC14_LUNG	1	1	0.0223	TRUE	0	0	0	16	0	TRUE	ACH-000030
PC14_LUNG	RP11-307P5.1--SASH1	2	0	RP11-307P5.1	1117	chr6:147981955:+	SASH1	21482	chr6:148835460:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	PC14_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	VAPA--FCGBP	2	0	VAPA	1334	chr18:9914332:+	FCGBP	35837	chr19:40406060:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,FCGBP->Fc_fragment_of_IgG_binding_protein,chr19:40353963-40440533:-	PC14_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000030
PC14_LUNG	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0112	0.0335	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PC14_LUNG	0.18	1	0.0447	FALSE	164	806	69	479	0	FALSE	ACH-000030
PC14_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	4	29	0.43	0.09	0.0112	0.0223	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PC14_LUNG	0.09	0.43	0.0335	FALSE	0	23	1	67	0	FALSE	ACH-000030
PC14_LUNG	RP11-307P5.1--SASH1	1	2	RP11-307P5.1	4371	chr6:148054947:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	46	0	0.06	1	0.0112	0.0223	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	PC14_LUNG	0.06	1	0.0335	TRUE	0	0	0	11	0	TRUE	ACH-000030
PC14_LUNG	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	NO	42	52	0.05	0.04	0.0112	0.0112	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	PC14_LUNG	0.04	0.05	0.0224	FALSE	118	557	29	88	0	FALSE	ACH-000030
PC14_LUNG	DANCR--SERINC2	1	1	DANCR	1530	chr4:53579126:+	SERINC2	18554	chr1:31905814:+	ONLY_REF_SPLICE	YES	398	164	0.01	0.01	0.0112	0.0112	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	PC14_LUNG	0.01	0.01	0.0224	FALSE	0	9	0	3	2	FALSE	ACH-000030
PC14_LUNG	FAM102A--PRRC2B	1	1	FAM102A	1522	chr9:130742271:-	PRRC2B	18260	chr9:134305477:+	ONLY_REF_SPLICE	NO	122	1	0.02	0.67	0.0112	0.0112	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B	PC14_LUNG	0.02	0.67	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000030
PC14_LUNG	IQUB--NDUFA5	1	1	IQUB	1586	chr7:123174546:-	NDUFA5	30068	chr7:123185730:-	ONLY_REF_SPLICE	YES	0	308	1	0.01	0.0112	0.0112	LOCAL_REARRANGEMENT:-:[1920],IQUB->IQ_motif_and_ubiquitin_domain_containing,chr7:123092454-123175131:-,NDUFA5->NADH:ubiquinone_oxidoreductase_subunit_A5,chr7:123177051-123198309:-	PC14_LUNG	0.01	1	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000030
PC14_LUNG	MAML2--MTMR2	1	1	MAML2	2798	chr11:96074547:-	MTMR2	23526	chr11:95598840:-	ONLY_REF_SPLICE	YES	20	101	0.09	0.02	0.0112	0.0112	NEIGHBORS[51283],MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,MTMR2->chr11:95566046-95658479:-,myotubularin_related_protein_2	PC14_LUNG	0.02	0.09	0.0224	FALSE	0	1	0	2	0	FALSE	ACH-000030
PC14_LUNG	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	45	1	0.04	0.0112	0.0112	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PC14_LUNG	0.04	1	0.0224	TRUE	64	13	3	59	0	FALSE	ACH-000030
PC14_LUNG	TDRD15--AC011752.1	1	1	TDRD15	2241	chr2:21350583:+	AC011752.1	15382	chr2:21618893:+	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0112	0.0112	TDRD15->chr2:21346789-21366144:+,tudor_domain_containing_15,AC011752.1->chr2:21540532-21784185:+	PC14_LUNG	0.4	1	0.0224	TRUE	1	1	0	1	1	TRUE	ACH-000030
HUPT3_PANCREAS	MLLT1--TMC8	293	58	MLLT1	2357	chr19:6270590:-	TMC8	24440	chr17:76137498:+	INCL_NON_REF_SPLICE	YES	62	1	0.85	1	3.1279	0.6192	MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1,TMC8->chr17:76126851-76139049:+,transmembrane_channel_like_8	HUPT3_PANCREAS	0.85	1	3.7471	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	DHX37--BRI3BP	211	140	DHX37	1206	chr12:125473463:-	BRI3BP	28838	chr12:125497080:+	ONLY_REF_SPLICE	YES	246	134	0.59	0.72	2.2525	1.4946	LOCAL_INVERSION:-:+:[4578],DHX37->DEAH-box_helicase_37,chr12:125431371-125473668:-,BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+	HUPT3_PANCREAS	0.59	0.72	3.7471	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	DCAF7--DDX42	221	84	DCAF7	8631	chr17:61666599:+	DDX42	21636	chr17:61875398:+	ONLY_REF_SPLICE	YES	652	214	0.32	0.59	2.3593	0.8967	DCAF7->DDB1_and_CUL4_associated_factor_7,chr17:61627822-61671639:+,DDX42->DEAD-box_helicase_42,chr17:61850963-61896677:+	HUPT3_PANCREAS	0.32	0.59	3.256	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	195	22	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	111	0	0.66	1	2.0817	0.2349	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.66	1	2.3166	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	SSFA2--PPP1R1C	161	112	SSFA2	1828	chr2:182757387:+	PPP1R1C	34844	chr2:182926169:+	ONLY_REF_SPLICE	YES	381	14	0.42	0.95	1.7188	1.1957	{Klijn_CCL:Pancreas=1},NEIGHBORS[23503],SSFA2->chr2:182756560-182795465:+,sperm_specific_antigen_2,PPP1R1C->chr2:182818968-182996125:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1C	HUPT3_PANCREAS	0.42	0.95	2.9145	FALSE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	TEX2--DDX42	172	24	TEX2	1134	chr17:62340528:-	DDX42	32059	chr17:61875398:+	ONLY_REF_SPLICE	YES	66	214	0.75	0.48	1.8362	0.2562	TEX2->chr17:62224587-62340661:-,testis_expressed_2,DDX42->DEAD-box_helicase_42,chr17:61850963-61896677:+	HUPT3_PANCREAS	0.48	0.75	2.0924	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	RAB8A--ADAM18	123	58	RAB8A	4251	chr19:16232620:+	ADAM18	34948	chr8:39550119:+	ONLY_REF_SPLICE	YES	252	4	0.42	0.98	1.3131	0.6192	{Klijn_CCL:Pancreas=1},RAB8A->Oncogene{Bushman},RAB8A,_member_RAS_oncogene_family,chr19:16222439-16245044:+,ADAM18->ADAM_metallopeptidase_domain_18,chr8:39442008-39587583:+	HUPT3_PANCREAS	0.42	0.98	1.9323	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	TLK2--ICAM2	100	116	TLK2	12803	chr17:60601692:+	ICAM2	42715	chr17:62084095:-	ONLY_REF_SPLICE	YES	728	627	0.23	0.26	1.0676	1.2384	TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,ICAM2->chr17:62079954-62097994:-,intercellular_adhesion_molecule_2	HUPT3_PANCREAS	0.23	0.26	2.306	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	108	23	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	3359	0	0.04	1	1.153	0.2455	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.04	1	1.3985	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	SSFA2--PPP1R1C	69	125	SSFA2	1828	chr2:182757387:+	PPP1R1C	31594	chr2:182852566:+	ONLY_REF_SPLICE	YES	381	12	0.34	0.94	0.7366	1.3344	{Klijn_CCL:Pancreas=1},NEIGHBORS[23503],SSFA2->chr2:182756560-182795465:+,sperm_specific_antigen_2,PPP1R1C->chr2:182818968-182996125:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1C	HUPT3_PANCREAS	0.34	0.94	2.071	FALSE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TA--MT-TN	97	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0355	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT3_PANCREAS	1	1	1.0355	FALSE	369	2501	205	193	0	FALSE	ACH-000118
HUPT3_PANCREAS	ASAP2--RP11-734K21.2	85	42	ASAP2	3685	chr2:9437574:+	RP11-734K21.2	35814	chr2:9244565:+	ONLY_REF_SPLICE	YES	75	13	0.63	0.91	0.9074	0.4484	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,RP11-734K21.2->chr2:9243569-9245243:+	HUPT3_PANCREAS	0.63	0.91	1.3558	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-TA--MT-TC	91	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9715	0.0854	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUPT3_PANCREAS	1	1	1.0569	FALSE	462	80	0	856	0	FALSE	ACH-000118
HUPT3_PANCREAS	TLK2--ICAM2	73	76	TLK2	11707	chr17:60600538:+	ICAM2	42715	chr17:62084095:-	ONLY_REF_SPLICE	YES	699	627	0.18	0.19	0.7793	0.8113	TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,ICAM2->chr17:62079954-62097994:-,intercellular_adhesion_molecule_2	HUPT3_PANCREAS	0.18	0.19	1.5906	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	ERN1--SMURF2	80	28	ERN1	4189	chr17:62175481:-	SMURF2	35149	chr17:62602758:-	ONLY_REF_SPLICE	YES	79	9	0.58	0.92	0.854	0.2989	{Klijn_CCL:Pancreas=1},ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1,SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-	HUPT3_PANCREAS	0.58	0.92	1.1529	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	83	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8861	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	1	1	0.8861	FALSE	230	193	14	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	37	182	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	17108	0	0.01	1	0.395	1.9429	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.01	1	2.3379	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	15	267	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	119	0	0.7	1	0.1601	2.8504	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.7	1	3.0105	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	13	265	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	63	2	0.82	0.99	0.1388	2.829	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.82	0.99	2.9678	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	SSFA2--PPP1R1C	47	126	SSFA2	4913	chr2:182760806:+	PPP1R1C	34844	chr2:182926169:+	ONLY_REF_SPLICE	YES	302	14	0.36	0.93	0.5018	1.3451	{Klijn_CCL:Pancreas=1},NEIGHBORS[23503],SSFA2->chr2:182756560-182795465:+,sperm_specific_antigen_2,PPP1R1C->chr2:182818968-182996125:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1C	HUPT3_PANCREAS	0.36	0.93	1.8469	FALSE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	TANC2--ERN1	73	21	TANC2	3326	chr17:61176718:+	ERN1	60858	chr17:62144292:-	ONLY_REF_SPLICE	YES	121	116	0.44	0.45	0.7793	0.2242	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1	HUPT3_PANCREAS	0.44	0.45	1.0035	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	10	272	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	2268	0	0.11	1	0.1068	2.9037	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.11	1	3.0105	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	7	274	MT-ND4	1519	chrM:11278:+	MT-ND4L	5394	chrM:10485:+	INCL_NON_REF_SPLICE	YES	3022	0	0.09	1	0.0747	2.9251	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.09	1	2.9998	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	9	263	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	93	1	0.75	1	0.0961	2.8077	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.75	1	2.9038	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	SSFA2--PPP1R1C	39	142	SSFA2	4913	chr2:182760806:+	PPP1R1C	31594	chr2:182852566:+	ONLY_REF_SPLICE	YES	302	12	0.37	0.94	0.4163	1.5159	{Klijn_CCL:Pancreas=1},NEIGHBORS[23503],SSFA2->chr2:182756560-182795465:+,sperm_specific_antigen_2,PPP1R1C->chr2:182818968-182996125:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1C	HUPT3_PANCREAS	0.37	0.94	1.9322	FALSE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	8	265	MT-ND4	1299	chrM:11058:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	YES	285	1	0.49	1	0.0854	2.829	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.49	1	2.9144	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	ASAP2--RP11-734K21.2	60	56	ASAP2	3685	chr2:9437574:+	RP11-734K21.2	35785	chr2:9244536:+	INCL_NON_REF_SPLICE	YES	75	12	0.61	0.91	0.6405	0.5978	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,RP11-734K21.2->chr2:9243569-9245243:+	HUPT3_PANCREAS	0.61	0.91	1.2383	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	283	MT-ND4	2279	chrM:12038:+	MT-ND4L	5519	chrM:10610:+	INCL_NON_REF_SPLICE	NO	236	1	0.55	1	0.032	3.0212	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.55	1	3.0532	FALSE	288	732	40	297	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	283	MT-ND4	1789	chrM:11548:+	MT-ND4L	5394	chrM:10485:+	INCL_NON_REF_SPLICE	YES	17510	0	0.02	1	0.032	3.0212	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.02	1	3.0532	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	282	MT-ND4	1776	chrM:11535:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	16452	0	0.02	1	0.032	3.0105	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.02	1	3.0425	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	280	MT-ND4	2050	chrM:11809:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	27709	1	0.01	1	0.032	2.9892	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.01	1	3.0212	FALSE	343	822	44	305	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	6	267	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	113	0	0.71	1	0.0641	2.8504	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.71	1	2.9145	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	275	MT-ND4	1754	chrM:11513:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	NO	14454	1	0.02	1	0.032	2.9358	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.02	1	2.9678	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	5	267	MT-ND4	1197	chrM:10956:+	MT-ND4L	5432	chrM:10523:+	INCL_NON_REF_SPLICE	YES	103	0	0.73	1	0.0534	2.8504	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.73	1	2.9038	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	275	MT-ND4	1741	chrM:11500:+	MT-ND4L	5529	chrM:10620:+	INCL_NON_REF_SPLICE	YES	13462	1	0.02	1	0.032	2.9358	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.02	1	2.9678	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	5	266	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	121	1	0.69	1	0.0534	2.8397	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.69	1	2.8931	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	5	266	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	102	0	0.73	1	0.0534	2.8397	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.73	1	2.8931	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	4	265	MT-ND4	1178	chrM:10937:+	MT-ND4L	5464	chrM:10555:+	INCL_NON_REF_SPLICE	YES	84	0	0.76	1	0.0427	2.829	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.76	1	2.8717	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	4	265	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	NO	93	0	0.74	1	0.0427	2.829	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.74	1	2.8717	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	RARS2--MAP3K7	63	27	RARS2	4773	chr6:88272420:-	MAP3K7	29872	chr6:91263305:-	ONLY_REF_SPLICE	YES	25	27	0.78	0.77	0.6726	0.2882	RARS2->arginyl-tRNA_synthetase_2,_mitochondrial,chr6:88224096-88299721:-,MAP3K7->Oncogene{Bushman},chr6:91223292-91296764:-,mitogen-activated_protein_kinase_kinase_kinase_7	HUPT3_PANCREAS	0.77	0.78	0.9608	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	4	262	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	51	1	0.84	1	0.0427	2.797	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.84	1	2.8397	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	266	MT-ND4	1217	chrM:10976:+	MT-ND4L	5518	chrM:10609:+	INCL_NON_REF_SPLICE	YES	113	1	0.7	1	0.032	2.8397	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.7	1	2.8717	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	266	MT-ND4	1222	chrM:10981:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	127	0	0.68	1	0.032	2.8397	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.68	1	2.8717	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	265	MT-ND4	1170	chrM:10929:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	YES	80	1	0.77	1	0.032	2.829	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.77	1	2.861	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	264	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	31	0	0.9	1	0.032	2.8183	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.9	1	2.8503	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	4	247	MT-ND4	1092	chrM:10851:+	MT-ND4L	5537	chrM:10628:+	INCL_NON_REF_SPLICE	YES	23	1	0.92	1	0.0427	2.6369	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.92	1	2.6796	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	9	216	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	14	1	0.94	1	0.0961	2.3059	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.94	1	2.402	FALSE	344	821	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	TIMM23B--LINC00843	56	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5978	0.2242	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HUPT3_PANCREAS	1	1	0.822	TRUE	508	994	45	981	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND6--MT-ND5	56	9	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	4600	1	0.01	0.5978	0.0961	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HUPT3_PANCREAS	0.01	1	0.6939	FALSE	101	855	57	72	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	11	187	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	31	0	0.86	1	0.1174	1.9963	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.86	1	2.1137	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MED13--ERN1	50	30	MED13	3547	chr17:60129898:-	ERN1	43263	chr17:62175601:-	ONLY_REF_SPLICE	YES	244	65	0.25	0.55	0.5338	0.3203	MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1	HUPT3_PANCREAS	0.25	0.55	0.8541	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	4	210	MT-ND4	1789	chrM:11548:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	17510	0	0.01	1	0.0427	2.2419	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.01	1	2.2846	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MRC2--MARCH10	49	20	MRC2	15392	chr17:60759738:+	MARCH10	45177	chr17:60779119:-	ONLY_REF_SPLICE	YES	115	1	0.38	0.99	0.5231	0.2135	LOCAL_INVERSION:+:-:[7717],MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2,MARCH10->chr17:60778675-60885705:-,membrane_associated_ring-CH-type_finger_10	HUPT3_PANCREAS	0.38	0.99	0.7366	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	5	179	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	272	0	0.4	1	0.0534	1.9109	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.4	1	1.9643	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MED13--TANC2	46	14	MED13	14191	chr17:60069901:-	TANC2	40176	chr17:61086898:+	INCL_NON_REF_SPLICE	YES	239	0	0.2	1	0.4911	0.1495	MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2	HUPT3_PANCREAS	0.2	1	0.6406	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	184	MT-ND4	1060	chrM:10819:+	MT-ND4L	5532	chrM:10623:+	INCL_NON_REF_SPLICE	YES	9	1	0.95	0.99	0.032	1.9643	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.95	0.99	1.9963	FALSE	344	821	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	LINC00472--RARS2	44	18	LINC00472	4804	chr6:72126113:-	RARS2	21292	chr6:88240660:-	ONLY_REF_SPLICE	YES	15	45	0.81	0.58	0.4697	0.1922	LINC00472->chr6:72054047-72130472:-,long_intergenic_non-protein_coding_RNA_472,RARS2->arginyl-tRNA_synthetase_2,_mitochondrial,chr6:88224096-88299721:-	HUPT3_PANCREAS	0.58	0.81	0.6619	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-CO2	47	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	381	11	0.12	0.82	0.5018	0.032	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUPT3_PANCREAS	0.12	0.82	0.5338	FALSE	59	21	0	114	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	175	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	109	0	0.62	1	0.032	1.8682	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.62	1	1.9002	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	4	167	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	279	0	0.38	1	0.0427	1.7828	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.38	1	1.8255	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	4	167	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	316	0	0.35	1	0.0427	1.7828	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.35	1	1.8255	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	SSFA2--PPP1R1C	12	120	SSFA2	1828	chr2:182757387:+	PPP1R1C	32655	chr2:182888549:+	ONLY_REF_SPLICE	YES	381	16	0.26	0.89	0.1281	1.2811	{Klijn_CCL:Pancreas=1},NEIGHBORS[23503],SSFA2->chr2:182756560-182795465:+,sperm_specific_antigen_2,PPP1R1C->chr2:182818968-182996125:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1C	HUPT3_PANCREAS	0.26	0.89	1.4092	FALSE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	TLK2--ICAM2	23	74	TLK2	12803	chr17:60601692:+	ICAM2	42779	chr17:62084031:-	ONLY_REF_SPLICE	YES	728	1665	0.12	0.06	0.2455	0.79	TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,ICAM2->chr17:62079954-62097994:-,intercellular_adhesion_molecule_2	HUPT3_PANCREAS	0.06	0.12	1.0355	TRUE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TA--MT-TN	19	82	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2028	0.8754	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT3_PANCREAS	1	1	1.0782	FALSE	369	2501	205	193	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	38	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4057	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	1	1	0.4057	FALSE	230	198	14	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	34	14	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	34827	0	0	1	0.363	0.1495	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.5125	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	27	42	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	24657	0	0	1	0.2882	0.4484	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0	1	0.7366	FALSE	328	800	43	304	0	FALSE	ACH-000118
HUPT3_PANCREAS	TIMM23--RP11-464F9.1	37	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	183	8	0.17	0.83	0.395	0.0107	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HUPT3_PANCREAS	0.17	0.83	0.4057	TRUE	519	3926	326	965	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	6	122	MT-ND4	1144	chrM:10903:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	51	0	0.72	1	0.0641	1.3024	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.72	1	1.3665	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	AFF1--PTPN13	32	17	AFF1	19695	chr4:88046295:+	PTPN13	71358	chr4:87701555:+	ONLY_REF_SPLICE	YES	39	75	0.56	0.4	0.3416	0.1815	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BLCA:2|LUAD:1|LUSC:1],AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,PTPN13->Oncogene{Bushman},chr4:87515468-87736324:+,protein_tyrosine_phosphatase,_non-receptor_type_13	HUPT3_PANCREAS	0.4	0.56	0.5231	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ND6--MT-TE	35	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3736	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUPT3_PANCREAS	1	1	0.3736	FALSE	499	1288	110	792	0	FALSE	ACH-000118
HUPT3_PANCREAS	TLK2--ICAM2	5	120	TLK2	12803	chr17:60601692:+	ICAM2	41628	chr17:62085182:-	ONLY_REF_SPLICE	YES	728	572	0.15	0.18	0.0534	1.2811	TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,ICAM2->chr17:62079954-62097994:-,intercellular_adhesion_molecule_2	HUPT3_PANCREAS	0.15	0.18	1.3345	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	SSFA2--PPP1R1C	1	134	SSFA2	4913	chr2:182760806:+	PPP1R1C	32655	chr2:182888549:+	ONLY_REF_SPLICE	YES	302	16	0.31	0.89	0.0107	1.4305	{Klijn_CCL:Pancreas=1},NEIGHBORS[23503],SSFA2->chr2:182756560-182795465:+,sperm_specific_antigen_2,PPP1R1C->chr2:182818968-182996125:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1C	HUPT3_PANCREAS	0.31	0.89	1.4412	FALSE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TA--MT-TN	16	68	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1708	0.7259	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT3_PANCREAS	1	1	0.8967	FALSE	369	2501	205	193	0	FALSE	ACH-000118
HUPT3_PANCREAS	SSFA2--PPP1R1C	1	125	SSFA2	1828	chr2:182757387:+	PPP1R1C	31573	chr2:182852545:+	ONLY_REF_SPLICE	YES	381	11	0.25	0.92	0.0107	1.3344	{Klijn_CCL:Pancreas=1},NEIGHBORS[23503],SSFA2->chr2:182756560-182795465:+,sperm_specific_antigen_2,PPP1R1C->chr2:182818968-182996125:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1C	HUPT3_PANCREAS	0.25	0.92	1.3451	FALSE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	TLK2--ICAM2	4	107	TLK2	12803	chr17:60601692:+	ICAM2	42719	chr17:62084091:-	ONLY_REF_SPLICE	YES	728	608	0.13	0.15	0.0427	1.1423	TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,ICAM2->chr17:62079954-62097994:-,intercellular_adhesion_molecule_2	HUPT3_PANCREAS	0.13	0.15	1.185	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	TLK2--ICAM2	18	50	TLK2	11707	chr17:60600538:+	ICAM2	42779	chr17:62084031:-	ONLY_REF_SPLICE	YES	699	1665	0.09	0.04	0.1922	0.5338	TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,ICAM2->chr17:62079954-62097994:-,intercellular_adhesion_molecule_2	HUPT3_PANCREAS	0.04	0.09	0.726	TRUE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	4	105	MT-ND4	1039	chrM:10798:+	MT-ND4L	5496	chrM:10587:+	INCL_NON_REF_SPLICE	NO	6	2	0.95	0.98	0.0427	1.1209	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.95	0.98	1.1636	FALSE	344	821	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	28	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2989	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	1	1	0.2989	FALSE	230	198	14	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	5	88	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	14	0	0.87	1	0.0534	0.9394	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.87	1	0.9928	FALSE	344	821	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO3--MT-ATP6	9	68	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	24	0.95	0.76	0.0961	0.7259	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUPT3_PANCREAS	0.76	0.95	0.822	FALSE	189	492	56	216	0	FALSE	ACH-000118
HUPT3_PANCREAS	TLK2--ICAM2	6	78	TLK2	11707	chr17:60600538:+	ICAM2	41628	chr17:62085182:-	ONLY_REF_SPLICE	YES	699	572	0.11	0.13	0.0641	0.8327	TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,ICAM2->chr17:62079954-62097994:-,intercellular_adhesion_molecule_2	HUPT3_PANCREAS	0.11	0.13	0.8968	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	DCAF7--DDX42	4	84	DCAF7	8631	chr17:61666599:+	DDX42	21620	chr17:61875382:+	INCL_NON_REF_SPLICE	YES	652	246	0.12	0.26	0.0427	0.8967	DCAF7->DDB1_and_CUL4_associated_factor_7,chr17:61627822-61671639:+,DDX42->DEAD-box_helicase_42,chr17:61850963-61896677:+	HUPT3_PANCREAS	0.12	0.26	0.9394	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	ERN1--SMURF2	20	20	ERN1	4189	chr17:62175481:-	SMURF2	36188	chr17:62594608:-	ONLY_REF_SPLICE	YES	79	34	0.34	0.54	0.2135	0.2135	{Klijn_CCL:Pancreas=1},ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1,SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-	HUPT3_PANCREAS	0.34	0.54	0.427	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-TA--MT-TN	18	24	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1922	0.2562	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT3_PANCREAS	1	1	0.4484	FALSE	369	2501	205	193	0	FALSE	ACH-000118
HUPT3_PANCREAS	C15orf57--CBX3	20	15	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	39	23	0.47	0.6	0.2135	0.1601	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HUPT3_PANCREAS	0.47	0.6	0.3736	TRUE	267	562	48	632	0	FALSE	ACH-000118
HUPT3_PANCREAS	CORO1C--PPP1CC	22	7	CORO1C	14086	chr12:109046048:-	PPP1CC	26433	chr12:111169706:-	ONLY_REF_SPLICE	YES	880	544	0.03	0.05	0.2349	0.0747	CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C,PPP1CC->Oncogene{Bushman},chr12:111157485-111180744:-,protein_phosphatase_1_catalytic_subunit_gamma	HUPT3_PANCREAS	0.03	0.05	0.3096	TRUE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO3--MT-ATP6	5	73	MT-CO3	1322	chrM:9528:+	MT-ATP6	5065	chrM:8807:+	INCL_NON_REF_SPLICE	YES	4	135	0.95	0.37	0.0534	0.7793	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUPT3_PANCREAS	0.37	0.95	0.8327	FALSE	189	492	56	216	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	12	45	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	9	0	0.86	1	0.1281	0.4804	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.86	1	0.6085	FALSE	344	821	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MRC2--LRRC37A3	20	12	MRC2	1520	chr17:60705281:+	LRRC37A3	41790	chr17:62857091:-	ONLY_REF_SPLICE	YES	40	51	0.44	0.39	0.2135	0.1281	{Klijn_CCL:Pancreas=1},MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	HUPT3_PANCREAS	0.39	0.44	0.3416	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	23	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2455	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	1	1	0.2455	FALSE	231	205	14	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	RAB8A--ADAM18	8	60	RAB8A	4251	chr19:16232620:+	ADAM18	31369	chr8:39534950:+	ONLY_REF_SPLICE	YES	252	0	0.21	1	0.0854	0.6405	{Klijn_CCL:Pancreas=1},RAB8A->Oncogene{Bushman},RAB8A,_member_RAS_oncogene_family,chr19:16222439-16245044:+,ADAM18->ADAM_metallopeptidase_domain_18,chr8:39442008-39587583:+	HUPT3_PANCREAS	0.21	1	0.7259	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	DHX37--BRI3BP	3	79	DHX37	1206	chr12:125473463:-	BRI3BP	29941	chr12:125509537:+	ONLY_REF_SPLICE	YES	246	418	0.25	0.16	0.032	0.8434	LOCAL_INVERSION:-:+:[4578],DHX37->DEAH-box_helicase_37,chr12:125431371-125473668:-,BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+	HUPT3_PANCREAS	0.16	0.25	0.8754	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-CO3--MT-ATP6	5	71	MT-CO3	1220	chrM:9426:+	MT-ATP6	5072	chrM:8814:+	INCL_NON_REF_SPLICE	YES	5	126	0.94	0.38	0.0534	0.758	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUPT3_PANCREAS	0.38	0.94	0.8114	FALSE	189	492	56	216	0	FALSE	ACH-000118
HUPT3_PANCREAS	SSFA2--PPP1R1C	12	42	SSFA2	1828	chr2:182757387:+	PPP1R1C	38497	chr2:182981934:+	ONLY_REF_SPLICE	YES	381	41	0.12	0.57	0.1281	0.4484	{Klijn_CCL:Pancreas=1},NEIGHBORS[23503],SSFA2->chr2:182756560-182795465:+,sperm_specific_antigen_2,PPP1R1C->chr2:182818968-182996125:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1C	HUPT3_PANCREAS	0.12	0.57	0.5765	FALSE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	18	16	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	34355	0	0	1	0.1922	0.1708	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.363	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	TANC2--ERN1	18	16	TANC2	3215	chr17:61176607:+	ERN1	60858	chr17:62144292:-	ONLY_REF_SPLICE	YES	119	116	0.22	0.23	0.1922	0.1708	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1	HUPT3_PANCREAS	0.22	0.23	0.363	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MAP3K3--LRRC37A3	20	6	MAP3K3	1349	chr17:61700123:+	LRRC37A3	41472	chr17:62857091:-	ONLY_REF_SPLICE	YES	1	51	0.96	0.34	0.2135	0.0641	{Klijn_CCL:Pancreas=1},MAP3K3->chr17:61699775-61773663:+,mitogen-activated_protein_kinase_kinase_kinase_3,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	HUPT3_PANCREAS	0.34	0.96	0.2776	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	4	69	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	6	2	0.92	0.97	0.0427	0.7366	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.92	0.97	0.7793	FALSE	344	821	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND6--MT-ND5	19	9	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	4441	1	0.01	0.2028	0.0961	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HUPT3_PANCREAS	0.01	1	0.2989	FALSE	101	855	57	72	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	15	24	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	16799	0	0	1	0.1601	0.2562	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0	1	0.4163	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TA--MT-TC	19	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2028	0.0747	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUPT3_PANCREAS	1	1	0.2775	FALSE	462	80	0	856	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	15	22	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4508	0	0.01	1	0.1601	0.2349	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0.01	1	0.395	FALSE	216	209	16	281	0	FALSE	ACH-000118
HUPT3_PANCREAS	TLK2--ICAM2	2	73	TLK2	11707	chr17:60600538:+	ICAM2	42719	chr17:62084091:-	ONLY_REF_SPLICE	YES	699	608	0.1	0.11	0.0214	0.7793	TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,ICAM2->chr17:62079954-62097994:-,intercellular_adhesion_molecule_2	HUPT3_PANCREAS	0.1	0.11	0.8007	TRUE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	HSPBP1--ZSWIM6	20	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2135	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	HUPT3_PANCREAS	1	1	0.2135	TRUE	47	32	1	28	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO3--MT-ATP6	3	68	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	6	24	0.92	0.75	0.032	0.7259	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUPT3_PANCREAS	0.75	0.92	0.7579	FALSE	189	492	56	216	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	68	MT-ND4	1803	chrM:11562:+	MT-ND4L	5649	chrM:10740:+	INCL_NON_REF_SPLICE	YES	19025	0	0	1	0.032	0.7259	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0	1	0.7579	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	16	12	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.93	0.1708	0.1281	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.93	1	0.2989	FALSE	344	821	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TA--MT-TN	19	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2028	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT3_PANCREAS	1	1	0.2028	FALSE	369	2501	205	193	0	FALSE	ACH-000118
HUPT3_PANCREAS	NPM1P24--SET	19	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2028	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HUPT3_PANCREAS	1	1	0.2028	TRUE	0	0	0	434	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	11	31	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	6	0	0.88	1	0.1174	0.3309	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0.88	1	0.4483	FALSE	209	205	15	279	0	FALSE	ACH-000118
HUPT3_PANCREAS	MAP3K3--LRRC37A3	17	6	MAP3K3	1349	chr17:61700123:+	LRRC37A3	40353	chr17:62859136:-	ONLY_REF_SPLICE	YES	1	37	0.96	0.38	0.1815	0.0641	{Klijn_CCL:Pancreas=1},MAP3K3->chr17:61699775-61773663:+,mitogen-activated_protein_kinase_kinase_kinase_3,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	HUPT3_PANCREAS	0.38	0.96	0.2456	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	RAB8A--ADAM18	10	34	RAB8A	4251	chr19:16232620:+	ADAM18	36029	chr8:39564309:+	ONLY_REF_SPLICE	YES	252	0	0.15	1	0.1068	0.363	{Klijn_CCL:Pancreas=1},RAB8A->Oncogene{Bushman},RAB8A,_member_RAS_oncogene_family,chr19:16222439-16245044:+,ADAM18->ADAM_metallopeptidase_domain_18,chr8:39442008-39587583:+	HUPT3_PANCREAS	0.15	1	0.4698	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	SSFA2--PPP1R1C	1	70	SSFA2	1828	chr2:182757387:+	PPP1R1C	35882	chr2:182928458:+	ONLY_REF_SPLICE	YES	381	21	0.16	0.77	0.0107	0.7473	{Klijn_CCL:Pancreas=1},NEIGHBORS[23503],SSFA2->chr2:182756560-182795465:+,sperm_specific_antigen_2,PPP1R1C->chr2:182818968-182996125:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1C	HUPT3_PANCREAS	0.16	0.77	0.758	FALSE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	8	40	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	3022	0	0.02	1	0.0854	0.427	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.02	1	0.5124	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND6--MT-TE	16	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.1708	0.0854	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUPT3_PANCREAS	0.86	1	0.2562	FALSE	499	1288	110	792	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	12	23	MT-ND4	1452	chrM:11211:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1568	0	0.02	1	0.1281	0.2455	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.02	1	0.3736	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	12	23	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	3430	0	0.01	1	0.1281	0.2455	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.01	1	0.3736	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	8	39	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	231	0	0.17	1	0.0854	0.4163	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.17	1	0.5017	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TC--MT-TY	16	2	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1708	0.0214	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HUPT3_PANCREAS	1	1	0.1922	FALSE	51	280	19	36	0	FALSE	ACH-000118
HUPT3_PANCREAS	LINC00472--RARS2	11	20	LINC00472	4804	chr6:72126113:-	RARS2	20215	chr6:88251712:-	ONLY_REF_SPLICE	YES	15	24	0.67	0.56	0.1174	0.2135	LINC00472->chr6:72054047-72130472:-,long_intergenic_non-protein_coding_RNA_472,RARS2->arginyl-tRNA_synthetase_2,_mitochondrial,chr6:88224096-88299721:-	HUPT3_PANCREAS	0.56	0.67	0.3309	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-TA--MT-TN	9	28	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0961	0.2989	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT3_PANCREAS	1	1	0.395	FALSE	369	2501	205	193	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-CO2	15	2	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	336	11	0.05	0.61	0.1601	0.0214	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUPT3_PANCREAS	0.05	0.61	0.1815	FALSE	59	21	0	114	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	10	22	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	109	0	0.23	1	0.1068	0.2349	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.23	1	0.3417	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	LINC00472--RARS2	10	21	LINC00472	4804	chr6:72126113:-	RARS2	19131	chr6:88255417:-	ONLY_REF_SPLICE	YES	15	18	0.67	0.63	0.1068	0.2242	LINC00472->chr6:72054047-72130472:-,long_intergenic_non-protein_coding_RNA_472,RARS2->arginyl-tRNA_synthetase_2,_mitochondrial,chr6:88224096-88299721:-	HUPT3_PANCREAS	0.63	0.67	0.331	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-CO3--MT-ATP6	3	49	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	1	2	0.98	0.96	0.032	0.5231	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUPT3_PANCREAS	0.96	0.98	0.5551	FALSE	189	492	56	216	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	11	16	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	33421	0	0	1	0.1174	0.1708	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.2882	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TA--MT-TN	3	47	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.5018	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT3_PANCREAS	1	1	0.5338	FALSE	369	2501	205	193	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO3--MT-ATP6	5	38	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	24	1	0.64	0.0534	0.4057	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUPT3_PANCREAS	0.64	1	0.4591	FALSE	189	492	56	216	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	11	14	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	268	0	0.09	1	0.1174	0.1495	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.09	1	0.2669	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO1--MT-ND1	13	4	MT-CO1	1699	chrM:6602:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	22531	10399	0	0	0.1388	0.0427	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	0	0	0.1815	FALSE	39	30	6	19	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	12	8	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	YES	34827	130	0	0.13	0.1281	0.0854	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	0.13	0.2135	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	12	8	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	34947	0	0	1	0.1281	0.0854	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.2135	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	11	12	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	33715	119	0	0.16	0.1174	0.1281	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	0.16	0.2455	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND6--MT-ND5	14	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1495	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HUPT3_PANCREAS	1	1	0.1495	FALSE	101	855	57	72	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND6--MT-TE	12	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1281	0.0747	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUPT3_PANCREAS	1	1	0.2028	FALSE	499	1288	110	792	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO3--MT-ATP6	13	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	4	0	0.79	1	0.1388	0.0214	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUPT3_PANCREAS	0.79	1	0.1602	FALSE	189	492	56	216	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	6	30	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	87	0	0.29	1	0.0641	0.3203	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0.29	1	0.3844	FALSE	213	207	15	279	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	8	22	MT-ND4	1213	chrM:10972:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	110	0	0.21	1	0.0854	0.2349	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.21	1	0.3203	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-CO2	13	1	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	220	11	0.06	0.56	0.1388	0.0107	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUPT3_PANCREAS	0.06	0.56	0.1495	FALSE	59	21	0	114	0	FALSE	ACH-000118
HUPT3_PANCREAS	LRRC6--GSDMC	11	8	LRRC6	7275	chr8:133644986:-	GSDMC	21016	chr8:130798741:-	INCL_NON_REF_SPLICE	YES	4	4	0.83	0.83	0.1174	0.0854	LRRC6->chr8:133584320-133687838:-,leucine_rich_repeat_containing_6,GSDMC->chr8:130760442-130799134:-,gasdermin_C	HUPT3_PANCREAS	0.83	0.83	0.2028	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	13	0	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1388	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	1	1	0.1388	FALSE	230	193	14	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	4	36	MT-ND4	2258	chrM:12017:+	MT-ATP8	5406	chrM:8393:+	INCL_NON_REF_SPLICE	YES	3163	0	0.01	1	0.0427	0.3843	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0.01	1	0.427	FALSE	216	209	16	281	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	39	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	85	0	0.33	1	0.032	0.4163	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.33	1	0.4483	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MAP3K3--LRRC37A3	11	6	MAP3K3	1349	chr17:61700123:+	LRRC37A3	38081	chr17:62865284:-	ONLY_REF_SPLICE	YES	1	18	0.94	0.49	0.1174	0.0641	{Klijn_CCL:Pancreas=1},MAP3K3->chr17:61699775-61773663:+,mitogen-activated_protein_kinase_kinase_kinase_3,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	HUPT3_PANCREAS	0.49	0.94	0.1815	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-CO2	12	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	219	11	0.06	0.54	0.1281	0.0107	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUPT3_PANCREAS	0.06	0.54	0.1388	FALSE	59	21	0	114	0	FALSE	ACH-000118
HUPT3_PANCREAS	SSFA2--PPP1R1C	1	45	SSFA2	4913	chr2:182760806:+	PPP1R1C	38497	chr2:182981934:+	ONLY_REF_SPLICE	NO	302	41	0.13	0.53	0.0107	0.4804	{Klijn_CCL:Pancreas=1},NEIGHBORS[23503],SSFA2->chr2:182756560-182795465:+,sperm_specific_antigen_2,PPP1R1C->chr2:182818968-182996125:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1C	HUPT3_PANCREAS	0.13	0.53	0.4911	FALSE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND6--MT-TE	12	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1281	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUPT3_PANCREAS	1	1	0.1281	FALSE	499	1288	110	792	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TA--MT-TC	12	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1281	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUPT3_PANCREAS	1	1	0.1281	FALSE	462	80	0	856	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TA--MT-TN	12	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1281	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT3_PANCREAS	1	1	0.1281	FALSE	369	2501	205	193	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	7	19	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	34532	0	0	1	0.0747	0.2028	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.2775	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND6--MT-ND5	10	7	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	2501	1	0.01	0.1068	0.0747	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HUPT3_PANCREAS	0.01	1	0.1815	FALSE	101	855	57	72	0	FALSE	ACH-000118
HUPT3_PANCREAS	RP11-680G10.1--GSE1	11	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	12	1	0.54	0.1174	0.032	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HUPT3_PANCREAS	0.54	1	0.1494	TRUE	458	1351	185	561	0	FALSE	ACH-000118
HUPT3_PANCREAS	IKZF3--P4HB	9	10	IKZF3	3225	chr17:37985640:-	P4HB	15203	chr17:79817263:-	ONLY_REF_SPLICE	YES	4	1390	0.83	0.01	0.0961	0.1068	IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	HUPT3_PANCREAS	0.01	0.83	0.2029	TRUE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	8	14	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	108	0	0.17	1	0.0854	0.1495	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.17	1	0.2349	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	6	22	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	70	0	0.29	1	0.0641	0.2349	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.29	1	0.299	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	4	29	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	2356	0	0.01	1	0.0427	0.3096	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0.01	1	0.3523	FALSE	216	209	16	281	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	33	MT-ND4	2226	chrM:11985:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	NO	8370	0	0	1	0.032	0.3523	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.3843	FALSE	216	209	16	281	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	6	21	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9448	0	0	1	0.0641	0.2242	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.2883	FALSE	218	210	16	281	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	33	MT-ND4	2237	chrM:11996:+	MT-ATP8	5422	chrM:8409:+	INCL_NON_REF_SPLICE	YES	6510	0	0.01	1	0.032	0.3523	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0.01	1	0.3843	FALSE	216	209	16	281	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	11	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1174	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	1	1	0.1174	FALSE	230	193	14	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	32	MT-ND4	1016	chrM:10775:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	1	0.95	0.97	0.032	0.3416	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.95	0.97	0.3736	FALSE	344	821	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	RAB8A--ADAM18	1	40	RAB8A	3190	chr19:16229096:+	ADAM18	34948	chr8:39550119:+	ONLY_REF_SPLICE	NO	265	4	0.13	0.91	0.0107	0.427	{Klijn_CCL:Pancreas=1},RAB8A->Oncogene{Bushman},RAB8A,_member_RAS_oncogene_family,chr19:16222439-16245044:+,ADAM18->ADAM_metallopeptidase_domain_18,chr8:39442008-39587583:+	HUPT3_PANCREAS	0.13	0.91	0.4377	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	RP11-114H23.1--RP11-114H23.2	11	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1174	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HUPT3_PANCREAS	1	1	0.1174	FALSE	81	155	12	160	0	FALSE	ACH-000118
HUPT3_PANCREAS	C15orf57--CBX3	9	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	38	23	0.3	0.41	0.0961	0.0747	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HUPT3_PANCREAS	0.3	0.41	0.1708	TRUE	267	562	48	632	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO3--MT-ATP6	5	23	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	1	1	0.97	0.97	0.0534	0.2455	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUPT3_PANCREAS	0.97	0.97	0.2989	FALSE	189	492	56	216	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	5	23	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	NO	34823	0	0	1	0.0534	0.2455	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.2989	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	5	21	MT-ND4	2281	chrM:12040:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	162	0	0.14	1	0.0534	0.2242	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0.14	1	0.2776	FALSE	213	207	15	279	0	FALSE	ACH-000118
HUPT3_PANCREAS	LRRC6--GSDMC	9	4	LRRC6	7275	chr8:133644986:-	GSDMC	22501	chr8:130789837:-	ONLY_REF_SPLICE	YES	4	9	0.76	0.59	0.0961	0.0427	LRRC6->chr8:133584320-133687838:-,leucine_rich_repeat_containing_6,GSDMC->chr8:130760442-130799134:-,gasdermin_C	HUPT3_PANCREAS	0.59	0.76	0.1388	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-ND1	10	0	MT-ATP6	1126	chrM:8652:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1068	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	1	1	0.1068	FALSE	78	55	12	7	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	28	MT-ND4	2123	chrM:11882:+	MT-ATP8	5432	chrM:8419:+	INCL_NON_REF_SPLICE	NO	20826	0	0	1	0.032	0.2989	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.3309	FALSE	231	215	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	28	MT-ND4	2104	chrM:11863:+	MT-ATP8	5416	chrM:8403:+	INCL_NON_REF_SPLICE	YES	22832	0	0	1	0.032	0.2989	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.3309	FALSE	231	215	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	4	24	MT-ND4	2335	chrM:12094:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0427	0.2562	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0.97	1	0.2989	FALSE	209	205	15	279	0	FALSE	ACH-000118
HUPT3_PANCREAS	DCAF7--DDX42	5	19	DCAF7	7393	chr17:61662690:+	DDX42	21636	chr17:61875398:+	ONLY_REF_SPLICE	YES	1205	214	0.02	0.1	0.0534	0.2028	DCAF7->DDB1_and_CUL4_associated_factor_7,chr17:61627822-61671639:+,DDX42->DEAD-box_helicase_42,chr17:61850963-61896677:+	HUPT3_PANCREAS	0.02	0.1	0.2562	TRUE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-ND1	9	3	MT-ATP6	1558	chrM:9084:+	MT-ND1	4887	chrM:3512:+	INCL_NON_REF_SPLICE	YES	35	10427	0.26	0	0.0961	0.032	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	0	0.26	0.1281	FALSE	78	55	12	7	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	26	MT-ND4	2235	chrM:11994:+	MT-ATP8	5468	chrM:8455:+	INCL_NON_REF_SPLICE	YES	6998	0	0	1	0.032	0.2776	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.3096	FALSE	216	209	16	281	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	6	14	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	14668	82	0	0.2	0.0641	0.1495	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	0.2	0.2136	FALSE	231	215	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	5	18	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	93	0	0.2	1	0.0534	0.1922	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.2	1	0.2456	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	6	14	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	100	0	0.17	1	0.0641	0.1495	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.17	1	0.2136	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	RP11-680G10.1--GSE1	9	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	30	1	0.27	0.0961	0.0214	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HUPT3_PANCREAS	0.27	1	0.1175	TRUE	465	1949	224	605	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-CO2	9	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	219	11	0.04	0.48	0.0961	0.0107	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUPT3_PANCREAS	0.04	0.48	0.1068	FALSE	59	21	0	114	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	6	13	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	33758	79	0	0.19	0.0641	0.1388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	0.19	0.2029	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	5	17	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	30379	0	0	1	0.0534	0.1815	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.2349	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	7	9	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	37157	0	0	1	0.0747	0.0961	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.1708	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	25	MT-ND4	2232	chrM:11991:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	7293	0	0	1	0.032	0.2669	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.2989	FALSE	216	209	16	281	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	25	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	27709	0	0	1	0.032	0.2669	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0	1	0.2989	FALSE	343	822	44	305	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	25	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	90	0	0.24	1	0.032	0.2669	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.24	1	0.2989	FALSE	344	826	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MLLT1--C17orf99	9	0	MLLT1	2357	chr19:6270590:-	C17orf99	15522	chr17:76142960:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0961	0	MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1,C17orf99->chr17:76142434-76162258:+,chromosome_17_open_reading_frame_99	HUPT3_PANCREAS	1	1	0.0961	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-CO2--MT-ND2	9	0	MT-CO2	1320	chrM:7905:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0961	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	1	1	0.0961	FALSE	105	46	5	21	0	FALSE	ACH-000118
HUPT3_PANCREAS	RARS2--MAP3K7	3	24	RARS2	4773	chr6:88272420:-	MAP3K7	29876	chr6:91263301:-	INCL_NON_REF_SPLICE	YES	25	26	0.52	0.51	0.032	0.2562	RARS2->arginyl-tRNA_synthetase_2,_mitochondrial,chr6:88224096-88299721:-,MAP3K7->Oncogene{Bushman},chr6:91223292-91296764:-,mitogen-activated_protein_kinase_kinase_kinase_7	HUPT3_PANCREAS	0.51	0.52	0.2882	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	4	19	MT-ND4	1812	chrM:11571:+	MT-ATP8	5458	chrM:8445:+	INCL_NON_REF_SPLICE	YES	34264	0	0	1	0.0427	0.2028	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.2455	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	4	19	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	34121	0	0	1	0.0427	0.2028	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.2455	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	22	MT-ND4	1788	chrM:11547:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	34368	0	0	1	0.032	0.2349	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.2669	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	5	13	MT-ND4	1571	chrM:11330:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	36269	0	0	1	0.0534	0.1388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.1922	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	4	17	MT-ND4	1843	chrM:11602:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	33763	0	0	1	0.0427	0.1815	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.2242	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TA--MT-TC	6	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0.0961	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUPT3_PANCREAS	1	1	0.1602	FALSE	462	80	0	856	0	FALSE	ACH-000118
HUPT3_PANCREAS	RP11-123O10.4--GRIP1	8	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0854	0.0107	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HUPT3_PANCREAS	1	1	0.0961	FALSE	416	2512	207	587	0	FALSE	ACH-000118
HUPT3_PANCREAS	HSPBP1--GRK5	8	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0854	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HUPT3_PANCREAS	1	1	0.0854	TRUE	1	39	0	134	39	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-ND1	8	0	MT-ATP6	1108	chrM:8634:+	MT-ND1	4706	chrM:3331:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0854	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	1	1	0.0854	FALSE	78	55	12	7	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0854	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	1	1	0.0854	FALSE	230	198	14	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	4	16	MT-ND4	2174	chrM:11933:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	15152	0	0	1	0.0427	0.1708	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.2135	FALSE	231	215	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TA--MT-TN	8	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0854	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT3_PANCREAS	1	1	0.0854	FALSE	369	2501	205	193	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TA--MT-TN	8	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0854	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT3_PANCREAS	1	1	0.0854	FALSE	369	2501	205	193	0	FALSE	ACH-000118
HUPT3_PANCREAS	SSFA2--PPP1R1C	6	8	SSFA2	1828	chr2:182757387:+	PPP1R1C	40208	chr2:182993701:+	ONLY_REF_SPLICE	YES	381	8	0.04	0.64	0.0641	0.0854	{Klijn_CCL:Pancreas=1},NEIGHBORS[23503],SSFA2->chr2:182756560-182795465:+,sperm_specific_antigen_2,PPP1R1C->chr2:182818968-182996125:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1C	HUPT3_PANCREAS	0.04	0.64	0.1495	FALSE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO3--MT-ATP6	4	15	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	1	0.95	0.95	0.0427	0.1601	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUPT3_PANCREAS	0.95	0.95	0.2028	FALSE	189	492	56	216	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	19	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	34349	0	0	1	0.032	0.2028	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.2348	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	5	11	MT-ND4	1645	chrM:11404:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	36661	0	0	1	0.0534	0.1174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.1708	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-CO2	3	18	MT-ATP6	1555	chrM:9081:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	23	11	0.48	0.66	0.032	0.1922	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUPT3_PANCREAS	0.48	0.66	0.2242	FALSE	59	21	0	114	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	18	MT-ND4	1998	chrM:11757:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	31339	0	0	1	0.032	0.1922	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.2242	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	6	6	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	33421	369	0	0.03	0.0641	0.0641	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	0.03	0.1282	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	4	14	MT-ND4	1783	chrM:11542:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	34827	0	0	1	0.0427	0.1495	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.1922	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MRC2--MARCH10	5	9	MRC2	1520	chr17:60705281:+	MARCH10	41308	chr17:60788705:-	ONLY_REF_SPLICE	YES	40	0	0.26	1	0.0534	0.0961	LOCAL_INVERSION:+:-:[7717],MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2,MARCH10->chr17:60778675-60885705:-,membrane_associated_ring-CH-type_finger_10	HUPT3_PANCREAS	0.26	1	0.1495	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-CO2	5	9	MT-ATP6	1516	chrM:9042:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	28	17	0.33	0.45	0.0534	0.0961	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUPT3_PANCREAS	0.33	0.45	0.1495	FALSE	59	21	0	114	0	FALSE	ACH-000118
HUPT3_PANCREAS	EEF2--RPS28	7	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HUPT3_PANCREAS	1	1	0.0747	TRUE	0	0	0	100	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-CO2	7	0	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUPT3_PANCREAS	1	1	0.0747	FALSE	59	21	0	114	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	7	0	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	1	1	0.0747	FALSE	230	193	14	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	7	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	1	1	0.0747	FALSE	230	193	14	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	5	8	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	34684	149	0	0.08	0.0534	0.0854	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	0.08	0.1388	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	RP11-96H19.1--RP11-446N19.1	6	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0641	0.032	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUPT3_PANCREAS	0.9	1	0.0961	FALSE	515	4851	409	746	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	14	MT-ND4	1779	chrM:11538:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	34705	0	0	1	0.032	0.1495	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.1815	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	NRIP1--AF127936.7	6	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0641	0.0214	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HUPT3_PANCREAS	0.8	1	0.0855	FALSE	292	1546	117	613	0	FALSE	ACH-000118
HUPT3_PANCREAS	TEX2--DDX42	3	14	TEX2	1134	chr17:62340528:-	DDX42	34206	chr17:61877828:+	ONLY_REF_SPLICE	YES	66	339	0.2	0.05	0.032	0.1495	TEX2->chr17:62224587-62340661:-,testis_expressed_2,DDX42->DEAD-box_helicase_42,chr17:61850963-61896677:+	HUPT3_PANCREAS	0.05	0.2	0.1815	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-CO2	6	1	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	250	11	0.03	0.39	0.0641	0.0107	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUPT3_PANCREAS	0.03	0.39	0.0748	FALSE	59	21	0	114	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	4	9	MT-ND4	1531	chrM:11290:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	38233	0	0	1	0.0427	0.0961	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.1388	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	268	0	0.06	1	0.032	0.1388	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.06	1	0.1708	FALSE	344	827	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	13	MT-ND4	1004	chrM:10763:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.1388	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	1	1	0.1708	FALSE	344	821	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	C15orf57--CBX3	4	8	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	38	23	0.24	0.34	0.0427	0.0854	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HUPT3_PANCREAS	0.24	0.34	0.1281	TRUE	267	562	48	632	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-CO2	3	12	MT-ATP6	1555	chrM:9081:+	MT-CO2	4955	chrM:7859:+	INCL_NON_REF_SPLICE	YES	23	18	0.39	0.45	0.032	0.1281	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUPT3_PANCREAS	0.39	0.45	0.1601	FALSE	59	21	0	114	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-CO2	6	0	MT-ATP6	1144	chrM:8670:+	MT-CO2	4926	chrM:7830:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUPT3_PANCREAS	1	1	0.0641	FALSE	59	21	0	114	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO1--MT-ND1	5	4	MT-CO1	1653	chrM:6556:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	NO	23187	10399	0	0	0.0534	0.0427	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	0	0	0.0961	FALSE	39	30	6	19	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO2--MT-ND2	6	0	MT-CO2	1240	chrM:7825:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	1	1	0.0641	FALSE	105	46	5	21	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO3--MT-ATP6	6	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUPT3_PANCREAS	1	1	0.0641	FALSE	189	492	56	216	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	4	8	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	35355	0	0	1	0.0427	0.0854	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.1281	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	6	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	1	1	0.0641	FALSE	344	821	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	6	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	1	1	0.0641	FALSE	344	821	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	6	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	1	1	0.0641	FALSE	344	821	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TA--MT-TN	6	0	MT-TA	1067	chrM:5589:-	MT-TN	4133	chrM:5666:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT3_PANCREAS	1	1	0.0641	FALSE	369	2501	205	193	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	11	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	34350	284	0	0.05	0.032	0.1174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	0.05	0.1494	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO1--MT-ND2	5	2	MT-CO1	2223	chrM:7126:+	MT-ND2	6422	chrM:5349:+	INCL_NON_REF_SPLICE	YES	17673	312	0	0.02	0.0534	0.0214	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	0	0.02	0.0748	FALSE	55	19	1	13	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-CO2	5	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	254	11	0.02	0.35	0.0534	0.0107	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUPT3_PANCREAS	0.02	0.35	0.0641	FALSE	59	21	0	114	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	9	MT-ND4	1566	chrM:11325:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	37044	0	0	1	0.032	0.0961	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.1281	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	5	1	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	26656	0	0	1	0.0534	0.0107	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.0641	FALSE	231	204	14	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND6--MT-ND5	4	5	MT-ND6	1463	chrM:14211:-	MT-ND5	6283	chrM:14094:+	INCL_NON_REF_SPLICE	YES	2	2322	0.82	0	0.0427	0.0534	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HUPT3_PANCREAS	0	0.82	0.0961	FALSE	101	855	57	72	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND6--MT-TE	3	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.75	1	0.032	0.0961	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUPT3_PANCREAS	0.75	1	0.1281	FALSE	499	1288	110	792	0	FALSE	ACH-000118
HUPT3_PANCREAS	CTD-2337A12.1--CAST	5	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0534	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HUPT3_PANCREAS	1	1	0.0534	TRUE	347	1186	183	220	0	FALSE	ACH-000118
HUPT3_PANCREAS	EREG--RPS28	5	0	EREG	1117	chr4:75230976:+	RPS28	13469	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	EREG->chr4:75230860-75254468:+,epiregulin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HUPT3_PANCREAS	1	1	0.0534	TRUE	0	0	0	3	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-ND1	5	0	MT-ATP6	1133	chrM:8659:+	MT-ND1	4902	chrM:3527:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	1	1	0.0534	FALSE	78	55	12	7	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO1--MT-ND2	3	8	MT-CO1	1919	chrM:6822:+	MT-ND2	5736	chrM:4663:+	INCL_NON_REF_SPLICE	YES	23851	13402	0	0	0.032	0.0854	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	0	0	0.1174	FALSE	55	19	1	13	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO2--MT-ND2	5	0	MT-CO2	1235	chrM:7820:+	MT-ND2	5515	chrM:5300:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	1	1	0.0534	FALSE	105	46	5	21	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO2--MT-ND2	5	0	MT-CO2	1356	chrM:7941:+	MT-ND2	5584	chrM:5369:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	1	1	0.0534	FALSE	105	46	5	21	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	4	4	MT-ND4	1342	chrM:11101:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	33688	0	0	1	0.0427	0.0427	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.0854	FALSE	231	215	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	8	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	34896	0	0	1	0.032	0.0854	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.1174	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	5	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	1	1	0.0534	FALSE	231	204	14	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND6--MT-TE	5	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUPT3_PANCREAS	1	1	0.0534	FALSE	499	1288	110	792	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND6--MT-TE	3	8	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.73	1	0.032	0.0854	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUPT3_PANCREAS	0.73	1	0.1174	FALSE	499	1288	110	792	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TC--MT-TY	5	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HUPT3_PANCREAS	1	1	0.0534	FALSE	51	280	19	36	0	FALSE	ACH-000118
HUPT3_PANCREAS	PRR16--CTD-2334D19.1	5	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0534	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HUPT3_PANCREAS	1	1	0.0534	FALSE	56	216	12	147	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-CO2	4	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	381	11	0.02	0.39	0.0427	0.032	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUPT3_PANCREAS	0.02	0.39	0.0747	FALSE	59	21	0	114	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	7	MT-ND4	2050	chrM:11809:+	MT-ATP8	5528	chrM:8515:+	INCL_NON_REF_SPLICE	YES	27613	369	0	0.03	0.032	0.0747	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	0.03	0.1067	FALSE	231	215	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND6--MT-TE	3	7	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	NO	1	0	0.91	1	0.032	0.0747	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUPT3_PANCREAS	0.91	1	0.1067	FALSE	499	1288	110	792	0	FALSE	ACH-000118
HUPT3_PANCREAS	CORO1C--PPP1CC	2	10	CORO1C	17502	chr12:109041177:-	PPP1CC	26433	chr12:111169706:-	ONLY_REF_SPLICE	NO	827	544	0.01	0.02	0.0214	0.1068	CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C,PPP1CC->Oncogene{Bushman},chr12:111157485-111180744:-,protein_phosphatase_1_catalytic_subunit_gamma	HUPT3_PANCREAS	0.01	0.02	0.1282	TRUE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	MDN1--CNR1	3	6	MDN1	54026	chr6:90409320:-	CNR1	108466	chr6:88855056:-	ONLY_REF_SPLICE	YES	26	12	0.26	0.43	0.032	0.0641	MDN1->chr6:90352218-90529442:-,midasin_AAA_ATPase_1,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	HUPT3_PANCREAS	0.26	0.43	0.0961	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-CO2	4	2	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	269	11	0.02	0.35	0.0427	0.0214	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUPT3_PANCREAS	0.02	0.35	0.0641	FALSE	59	21	0	114	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-CO2	3	6	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	317	17	0.03	0.35	0.032	0.0641	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUPT3_PANCREAS	0.03	0.35	0.0961	FALSE	59	21	0	114	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-ND1	4	2	MT-ATP6	1575	chrM:9101:+	MT-ND1	5182	chrM:3807:+	INCL_NON_REF_SPLICE	YES	15	14069	0.29	0	0.0427	0.0214	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	0	0.29	0.0641	FALSE	78	55	12	7	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO3--MT-ATP6	3	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.032	0.0641	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUPT3_PANCREAS	0.69	1	0.0961	FALSE	189	492	56	216	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	6	MT-ND4	1443	chrM:11202:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	35498	0	0	1	0.032	0.0641	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.0961	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	6	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	35392	0	0	1	0.032	0.0641	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.0961	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	6	MT-ND4	1843	chrM:11602:+	MT-ATP8	5527	chrM:8514:+	INCL_NON_REF_SPLICE	YES	33763	363	0	0.02	0.032	0.0641	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	0.02	0.0961	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TW--MT-ND2	4	2	MT-TW	1004	chrM:5515:+	MT-ND2	4879	chrM:5280:+	INCL_NON_REF_SPLICE	YES	0	133	1	0.04	0.0427	0.0214	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	0.04	1	0.0641	FALSE	14	0	0	19	0	FALSE	ACH-000118
HUPT3_PANCREAS	LAMP1--MT-CO2	4	1	LAMP1	10050	chr13:113976678:+	MT-CO2	14590	chrM:7816:+	INCL_NON_REF_SPLICE	YES	931	217	0.01	0.02	0.0427	0.0107	LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUPT3_PANCREAS	0.01	0.02	0.0534	FALSE	0	0	0	6	0	FALSE	ACH-000118
HUPT3_PANCREAS	MED13--TANC2	4	1	MED13	11772	chr17:60087911:-	TANC2	41266	chr17:61151304:+	ONLY_REF_SPLICE	YES	331	0	0.01	1	0.0427	0.0107	MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2	HUPT3_PANCREAS	0.01	1	0.0534	FALSE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO1--MT-ND1	3	5	MT-CO1	1704	chrM:6607:+	MT-ND1	5565	chrM:3329:+	INCL_NON_REF_SPLICE	NO	22209	0	0	1	0.032	0.0534	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	0	1	0.0854	FALSE	39	30	6	19	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO1--MT-ND2	4	1	MT-CO1	1653	chrM:6556:+	MT-ND2	6394	chrM:5321:+	INCL_NON_REF_SPLICE	YES	23208	496	0	0.01	0.0427	0.0107	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	0	0.01	0.0534	FALSE	55	19	1	13	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO1--MT-ND2	4	1	MT-CO1	1939	chrM:6842:+	MT-ND2	6374	chrM:5301:+	INCL_NON_REF_SPLICE	NO	24276	684	0	0.01	0.0427	0.0107	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	0	0.01	0.0534	FALSE	55	19	1	13	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO3--MT-ATP6	3	5	MT-CO3	1173	chrM:9379:+	MT-ATP6	5450	chrM:9192:+	INCL_NON_REF_SPLICE	YES	5	0	0.62	1	0.032	0.0534	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUPT3_PANCREAS	0.62	1	0.0854	FALSE	189	492	56	216	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO3--MT-ATP6	3	5	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	5	0	0.62	1	0.032	0.0534	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUPT3_PANCREAS	0.62	1	0.0854	FALSE	189	492	56	216	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	5	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	37855	117	0	0.06	0.032	0.0534	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	0.06	0.0854	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND6--MT-ND5	3	5	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	4	2486	0.67	0	0.032	0.0534	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HUPT3_PANCREAS	0	0.67	0.0854	FALSE	101	855	57	72	0	FALSE	ACH-000118
HUPT3_PANCREAS	MDN1--CNR1	2	8	MDN1	54026	chr6:90409320:-	CNR1	107295	chr6:88857525:-	ONLY_REF_SPLICE	YES	26	7	0.28	0.59	0.0214	0.0854	MDN1->chr6:90352218-90529442:-,midasin_AAA_ATPase_1,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	HUPT3_PANCREAS	0.28	0.59	0.1068	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MRC2--LRRC37A3	1	12	MRC2	1520	chr17:60705281:+	LRRC37A3	38399	chr17:62865284:-	ONLY_REF_SPLICE	YES	40	18	0.25	0.42	0.0107	0.1281	{Klijn_CCL:Pancreas=1},MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	HUPT3_PANCREAS	0.25	0.42	0.1388	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-ND1	4	0	MT-ATP6	1187	chrM:8713:+	MT-ND1	5372	chrM:3997:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	1	1	0.0427	FALSE	78	55	12	7	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-ND1	4	0	MT-ATP6	1106	chrM:8632:+	MT-ND1	5099	chrM:3724:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	1	1	0.0427	FALSE	78	55	12	7	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO1--MT-ND2	4	0	MT-CO1	1589	chrM:6492:+	MT-ND2	6462	chrM:5389:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	1	1	0.0427	FALSE	55	19	1	13	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO1--MT-ND2	3	4	MT-CO1	1603	chrM:6506:+	MT-ND2	5988	chrM:4915:+	INCL_NON_REF_SPLICE	YES	16160	10680	0	0	0.032	0.0427	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	0	0	0.0747	FALSE	55	19	1	13	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO2--MT-ND2	4	0	MT-CO2	1345	chrM:7930:+	MT-ND2	5570	chrM:5355:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	1	1	0.0427	FALSE	105	46	5	21	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO2--MT-ND2	3	4	MT-CO2	1234	chrM:7819:+	MT-ND2	4719	chrM:4504:+	INCL_NON_REF_SPLICE	YES	285	0	0.02	1	0.032	0.0427	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	0.02	1	0.0747	FALSE	105	46	5	21	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUPT3_PANCREAS	1	1	0.0427	FALSE	189	492	56	216	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	4	0	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	1	1	0.0427	FALSE	230	193	14	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	4	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	1	1	0.0427	FALSE	231	204	14	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	4	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	1	1	0.0427	FALSE	344	821	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUPT3_PANCREAS	1	1	0.0427	FALSE	499	1288	110	792	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TA--MT-TN	4	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT3_PANCREAS	1	1	0.0427	FALSE	369	2501	205	193	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TC--MT-TY	4	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HUPT3_PANCREAS	1	1	0.0427	FALSE	51	280	19	36	0	FALSE	ACH-000118
HUPT3_PANCREAS	RPSAP52--HMGA2	4	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HUPT3_PANCREAS	1	1	0.0427	FALSE	0	59	0	125	0	FALSE	ACH-000118
HUPT3_PANCREAS	ASAP2--RP11-734K21.2	2	7	ASAP2	3685	chr2:9437574:+	RP11-734K21.2	36374	chr2:9245125:+	ONLY_REF_SPLICE	YES	75	34	0.11	0.21	0.0214	0.0747	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,RP11-734K21.2->chr2:9243569-9245243:+	HUPT3_PANCREAS	0.11	0.21	0.0961	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	LRRC6--GSDMC	3	3	LRRC6	6051	chr8:133650181:-	GSDMC	21016	chr8:130798741:-	INCL_NON_REF_SPLICE	YES	24	4	0.2	0.6	0.032	0.032	LRRC6->chr8:133584320-133687838:-,leucine_rich_repeat_containing_6,GSDMC->chr8:130760442-130799134:-,gasdermin_C	HUPT3_PANCREAS	0.2	0.6	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-CO1--MT-ND1	3	3	MT-CO1	1577	chrM:6480:+	MT-ND1	5598	chrM:3362:+	INCL_NON_REF_SPLICE	YES	13426	0	0	1	0.032	0.032	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	0	1	0.064	FALSE	39	30	6	19	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO1--MT-ND2	3	3	MT-CO1	1699	chrM:6602:+	MT-ND2	6267	chrM:5194:+	INCL_NON_REF_SPLICE	YES	22535	2354	0	0	0.032	0.032	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	0	0	0.064	FALSE	55	19	1	13	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO1--MT-ND2	3	3	MT-CO1	1533	chrM:6436:+	MT-ND2	5968	chrM:4895:+	INCL_NON_REF_SPLICE	NO	10701	11966	0	0	0.032	0.032	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	0	0	0.064	FALSE	55	19	1	13	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	3	MT-ND4	1572	chrM:11331:+	MT-ATP8	5534	chrM:8521:+	INCL_NON_REF_SPLICE	YES	36299	374	0	0.02	0.032	0.032	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	0.02	0.064	FALSE	231	217	16	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0.032	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUPT3_PANCREAS	1	1	0.064	FALSE	467	2173	244	435	0	FALSE	ACH-000118
HUPT3_PANCREAS	SYNRG--RP1-66C13.4	3	3	SYNRG	17592	chr17:35921297:-	RP1-66C13.4	42152	chr17:26131370:-	INCL_NON_REF_SPLICE	YES	25	0	0.19	1	0.032	0.032	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,RP1-66C13.4->chr17:26125832-26220391:-	HUPT3_PANCREAS	0.19	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MT-CO1--MT-ND1	3	2	MT-CO1	1699	chrM:6602:+	MT-ND1	6048	chrM:3812:+	INCL_NON_REF_SPLICE	YES	22531	14031	0	0	0.032	0.0214	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	0	0	0.0534	FALSE	39	30	6	19	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO3--MT-ATP6	3	2	MT-CO3	1192	chrM:9398:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	5	0	0.5	1	0.032	0.0214	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUPT3_PANCREAS	0.5	1	0.0534	FALSE	189	492	56	216	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TW--MT-ND2	3	2	MT-TW	1004	chrM:5515:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	130	1	0.04	0.032	0.0214	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	0.04	1	0.0534	FALSE	14	0	0	19	0	FALSE	ACH-000118
HUPT3_PANCREAS	CORO1C--PPP1CC	1	9	CORO1C	16380	chr12:109042381:-	PPP1CC	26433	chr12:111169706:-	ONLY_REF_SPLICE	YES	1232	544	0.01	0.02	0.0107	0.0961	CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C,PPP1CC->Oncogene{Bushman},chr12:111157485-111180744:-,protein_phosphatase_1_catalytic_subunit_gamma	HUPT3_PANCREAS	0.01	0.02	0.1068	TRUE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	IKZF3--P4HB	2	5	IKZF3	3225	chr17:37985640:-	P4HB	17201	chr17:79813462:-	ONLY_REF_SPLICE	YES	4	1256	0.64	0.01	0.0214	0.0534	IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	HUPT3_PANCREAS	0.01	0.64	0.0748	FALSE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-ND1	3	1	MT-ATP6	1158	chrM:8684:+	MT-ND1	5195	chrM:3820:+	INCL_NON_REF_SPLICE	YES	359	14467	0.01	0	0.032	0.0107	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	0	0.01	0.0427	FALSE	78	55	12	7	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	1	MT-ND4	1262	chrM:11021:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	28699	0	0	1	0.032	0.0107	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	0	1	0.0427	FALSE	231	205	14	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	9	0	0.31	1	0.032	0.0107	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.31	1	0.0427	FALSE	344	821	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ND4L	3	1	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	NO	7	0	0.36	1	0.032	0.0107	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUPT3_PANCREAS	0.36	1	0.0427	FALSE	344	821	44	306	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-CO2	3	0	MT-ATP6	1072	chrM:8598:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUPT3_PANCREAS	1	1	0.032	FALSE	59	21	0	114	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-ND1	3	0	MT-ATP6	1100	chrM:8626:+	MT-ND1	5092	chrM:3717:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	1	1	0.032	FALSE	78	55	12	7	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-ND1	3	0	MT-ATP6	1098	chrM:8624:+	MT-ND1	4697	chrM:3322:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	1	1	0.032	FALSE	78	55	12	7	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-ND1	3	0	MT-ATP6	1558	chrM:9084:+	MT-ND1	5388	chrM:4013:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	1	1	0.032	FALSE	78	55	12	7	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-ND1	3	0	MT-ATP6	1114	chrM:8640:+	MT-ND1	5413	chrM:4038:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	1	1	0.032	FALSE	78	55	12	7	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ATP6--MT-ND1	3	0	MT-ATP6	1130	chrM:8656:+	MT-ND1	5169	chrM:3794:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUPT3_PANCREAS	1	1	0.032	FALSE	78	55	12	7	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO2--MT-ND2	3	0	MT-CO2	1234	chrM:7819:+	MT-ND2	5523	chrM:5308:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	1	1	0.032	FALSE	105	46	5	21	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO2--MT-ND2	3	0	MT-CO2	1276	chrM:7861:+	MT-ND2	5541	chrM:5326:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HUPT3_PANCREAS	1	1	0.032	FALSE	105	46	5	21	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUPT3_PANCREAS	1	1	0.032	FALSE	189	492	56	216	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5571	chrM:8558:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	1	1	0.032	FALSE	231	204	14	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND4--MT-ATP8	3	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUPT3_PANCREAS	1	1	0.032	FALSE	231	204	14	283	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUPT3_PANCREAS	1	1	0.032	FALSE	499	1288	110	792	0	FALSE	ACH-000118
HUPT3_PANCREAS	MT-TA--MT-TN	3	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUPT3_PANCREAS	1	1	0.032	FALSE	369	2501	205	193	0	FALSE	ACH-000118
HUPT3_PANCREAS	SYNRG--RP1-66C13.4	2	3	SYNRG	17592	chr17:35921297:-	RP1-66C13.4	42155	chr17:26131367:-	ONLY_REF_SPLICE	YES	25	0	0.17	1	0.0214	0.032	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,RP1-66C13.4->chr17:26125832-26220391:-	HUPT3_PANCREAS	0.17	1	0.0534	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	MAP3K3--LRRC37A3	1	6	MAP3K3	1349	chr17:61700123:+	LRRC37A3	38711	chr17:62864654:-	ONLY_REF_SPLICE	YES	1	15	0.88	0.32	0.0107	0.0641	{Klijn_CCL:Pancreas=1},MAP3K3->chr17:61699775-61773663:+,mitogen-activated_protein_kinase_kinase_kinase_3,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	HUPT3_PANCREAS	0.32	0.88	0.0748	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	DPH6-AS1--RP11-684B21.1	2	1	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	NO	2	0	0.6	1	0.0214	0.0107	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	HUPT3_PANCREAS	0.6	1	0.0321	TRUE	17	119	17	33	0	FALSE	ACH-000118
HUPT3_PANCREAS	CORO1C--PPP1CC	2	0	CORO1C	10072	chr12:109052514:-	PPP1CC	30711	chr12:111162569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C,PPP1CC->Oncogene{Bushman},chr12:111157485-111180744:-,protein_phosphatase_1_catalytic_subunit_gamma	HUPT3_PANCREAS	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	IKBKAP--MTG2	2	0	IKBKAP	19712	chr9:111662102:-	MTG2	43231	chr20:60770858:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	IKBKAP->chr9:111629797-111696396:-,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_complex-associated_protein,MTG2->chr20:60758085-60778624:+,mitochondrial_ribosome_associated_GTPase_2	HUPT3_PANCREAS	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	SETD3--CNN3	2	0	SETD3	1152	chr14:99947065:-	CNN3	26132	chr1:95369080:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,CNN3->calponin_3,chr1:95362507-95392834:-	HUPT3_PANCREAS	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	SF1--MAPK9	2	0	SF1	3289	chr11:64543970:-	MAPK9	18572	chr5:179707608:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SF1->chr11:64532078-64546258:-,splicing_factor_1,MAPK9->Oncogene{Bushman},chr5:179660143-179719099:-,mitogen-activated_protein_kinase_9	HUPT3_PANCREAS	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	TANC2--ERN1	2	0	TANC2	3215	chr17:61176607:+	ERN1	62120	chr17:62142647:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1	HUPT3_PANCREAS	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000118
HUPT3_PANCREAS	BRI3BP--UBC	1	2	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	129	107	0.02	0.03	0.0107	0.0214	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	HUPT3_PANCREAS	0.02	0.03	0.0321	TRUE	5	99	5	34	0	FALSE	ACH-000118
HUPT3_PANCREAS	CORO1C--PPP1CC	1	2	CORO1C	11192	chr12:109051080:-	PPP1CC	26433	chr12:111169706:-	ONLY_REF_SPLICE	YES	1112	544	0	0.01	0.0107	0.0214	CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C,PPP1CC->Oncogene{Bushman},chr12:111157485-111180744:-,protein_phosphatase_1_catalytic_subunit_gamma	HUPT3_PANCREAS	0	0.01	0.0321	FALSE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	RP11-120D5.1--MID1	1	2	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	0	21	1	0.12	0.0107	0.0214	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HUPT3_PANCREAS	0.12	1	0.0321	FALSE	2	31	0	60	0	FALSE	ACH-000118
HUPT3_PANCREAS	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	21	0.75	0.12	0.0107	0.0214	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HUPT3_PANCREAS	0.12	0.75	0.0321	FALSE	16	356	14	466	0	FALSE	ACH-000118
HUPT3_PANCREAS	ATRX--MAGT1	1	1	ATRX	1235	chrX:77041468:-	MAGT1	48542	chrX:77131094:-	ONLY_REF_SPLICE	YES	39	167	0.05	0.01	0.0107	0.0107	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[40159],ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,MAGT1->chrX:77081861-77151090:-,magnesium_transporter_1	HUPT3_PANCREAS	0.01	0.05	0.0214	FALSE	0	0	0	2	0	FALSE	ACH-000118
HUPT3_PANCREAS	EXT1--METTL3	1	1	EXT1	10494	chr8:118830674:-	METTL3	28609	chr14:21972024:-	ONLY_REF_SPLICE	NO	217	302	0.01	0.01	0.0107	0.0107	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,METTL3->chr14:21966277-21979517:-,methyltransferase_like_3	HUPT3_PANCREAS	0.01	0.01	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000118
HUPT3_PANCREAS	RPS6KB1--VMP1	1	1	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	75	278	0.03	0.01	0.0107	0.0107	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HUPT3_PANCREAS	0.01	0.03	0.0214	FALSE	0	9	0	11	6	FALSE	ACH-000118
HUPT3_PANCREAS	SUPT3H--CYP39A1	1	1	SUPT3H	2744	chr6:45332938:-	CYP39A1	29187	chr6:46593245:-	ONLY_REF_SPLICE	YES	16	2	0.11	0.5	0.0107	0.0107	SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,CYP39A1->chr6:46517541-46620523:-,cytochrome_P450_family_39_subfamily_A_member_1	HUPT3_PANCREAS	0.11	0.5	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000118
NCIH196_LUNG	COL1A1--COL12A1	191	7	COL1A1	12984	chr17:48266791:-	COL12A1	80399	chr6:75797412:-	INCL_NON_REF_SPLICE	YES	7109	882	0.03	0.18	2.6116	0.0957	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	NCIH196_LUNG	0.03	0.18	2.7073	TRUE	0	5	0	2	5	TRUE	ACH-000752
NCIH196_LUNG	RECQL--FGF23	114	84	RECQL	2561	chr12:21652489:-	FGF23	20475	chr12:4481863:-	ONLY_REF_SPLICE	YES	111	0	0.64	1	1.5587	1.1485	{Klijn_CCL:Lung=1},RECQL->Oncogene{Bushman},RecQ_like_helicase,chr12:21621845-21654603:-,FGF23->ArcherDX_panel,FoundationOne_panel,chr12:4477393-4488894:-,fibroblast_growth_factor_23	NCIH196_LUNG	0.64	1	2.7072	TRUE	0	0	0	1	0	TRUE	ACH-000752
NCIH196_LUNG	KANSL1--ARL17B	79	45	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	34	62	0.78	0.67	1.0802	0.6153	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH196_LUNG	0.67	0.78	1.6955	TRUE	181	1564	124	196	0	FALSE	ACH-000752
NCIH196_LUNG	AP003900.6--AC011718.2	70	14	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.9571	0.1914	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH196_LUNG	1	1	1.1485	TRUE	0	3	0	38	3	FALSE	ACH-000752
NCIH196_LUNG	COL1A1--COL12A1	61	7	COL1A1	12975	chr17:48266800:-	COL12A1	80399	chr6:75797412:-	INCL_NON_REF_SPLICE	YES	7400	882	0.01	0.07	0.8341	0.0957	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	NCIH196_LUNG	0.01	0.07	0.9298	TRUE	0	5	0	2	5	TRUE	ACH-000752
NCIH196_LUNG	TIMM23B--LINC00843	56	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7657	0.3555	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH196_LUNG	1	1	1.1212	TRUE	508	994	45	981	0	FALSE	ACH-000752
NCIH196_LUNG	TIMM23--RP11-464F9.1	35	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	189	4	0.17	0.9	0.4786	0.041	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH196_LUNG	0.17	0.9	0.5196	TRUE	519	3926	326	965	0	FALSE	ACH-000752
NCIH196_LUNG	COL1A1--COL12A1	31	6	COL1A1	8463	chr17:48271312:-	COL12A1	73392	chr6:75811749:-	INCL_NON_REF_SPLICE	YES	7759	905	0	0.04	0.4239	0.082	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	NCIH196_LUNG	0	0.04	0.5059	TRUE	0	0	0	1	0	FALSE	ACH-000752
NCIH196_LUNG	HSP90AB1--MT-RNR2	24	5	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3838	0	0.01	1	0.3282	0.0684	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH196_LUNG	0.01	1	0.3966	FALSE	13	9	0	364	0	FALSE	ACH-000752
NCIH196_LUNG	RP11-680G10.1--GSE1	21	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	19	1	0.58	0.2871	0.0684	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH196_LUNG	0.58	1	0.3555	TRUE	465	1949	224	605	0	FALSE	ACH-000752
NCIH196_LUNG	AP003900.6--AC011718.2	15	4	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	0	5	1	0.79	0.2051	0.0547	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH196_LUNG	0.79	1	0.2598	TRUE	0	1	0	21	1	FALSE	ACH-000752
NCIH196_LUNG	COL12A1--COL1A1	14	2	COL12A1	59327	chr6:75797359:-	COL1A1	69301	chr17:48275118:-	INCL_NON_REF_SPLICE	NO	950	6898	0.02	0	0.1914	0.0273	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,HGNC_GENEFAM,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	NCIH196_LUNG	0	0.02	0.2187	FALSE	0	0	0	4	0	FALSE	ACH-000752
NCIH196_LUNG	XXbac-BPG252P9.9--IFI27	11	12	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	4909	3	0	0.88	0.1504	0.1641	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	NCIH196_LUNG	0	0.88	0.3145	TRUE	0	2	0	13	2	TRUE	ACH-000752
NCIH196_LUNG	FAM208B--NET1	11	10	FAM208B	24623	chr10:5791990:+	NET1	40326	chr10:5493793:+	ONLY_REF_SPLICE	YES	81	60	0.21	0.26	0.1504	0.1367	{Klijn_CCL:Lung=1},FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,NET1->Oncogene{Bushman},chr10:5454514-5500426:+,neuroepithelial_cell_transforming_1	NCIH196_LUNG	0.21	0.26	0.2871	TRUE	0	0	0	1	0	TRUE	ACH-000752
NCIH196_LUNG	MYH9--FOXRED2	12	5	MYH9	5055	chr22:36737415:-	FOXRED2	49877	chr22:36894203:-	ONLY_REF_SPLICE	YES	1052	21	0.02	0.45	0.1641	0.0684	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[99174],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,FOXRED2->FAD_dependent_oxidoreductase_domain_containing_2,chr22:36883237-36903148:-	NCIH196_LUNG	0.02	0.45	0.2325	TRUE	0	1	0	1	1	FALSE	ACH-000752
NCIH196_LUNG	CHSY3--HSPA8P4	11	8	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	79	0	0.19	1	0.1504	0.1094	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	NCIH196_LUNG	0.19	1	0.2598	FALSE	89	26	1	44	0	FALSE	ACH-000752
NCIH196_LUNG	COL1A1--COL12A1	11	7	COL1A1	13148	chr17:48266627:-	COL12A1	80390	chr6:75797421:-	INCL_NON_REF_SPLICE	YES	7815	815	0	0.02	0.1504	0.0957	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	NCIH196_LUNG	0	0.02	0.2461	TRUE	0	5	0	2	5	TRUE	ACH-000752
NCIH196_LUNG	HSP90AB1--MT-RNR2	11	5	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3870	0	0	1	0.1504	0.0684	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH196_LUNG	0	1	0.2188	FALSE	13	9	0	364	0	FALSE	ACH-000752
NCIH196_LUNG	CTD-2008L17.1--RP11-456O19.2	9	8	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.1231	0.1094	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH196_LUNG	0.89	1	0.2325	FALSE	20	187	4	79	0	FALSE	ACH-000752
NCIH196_LUNG	RP4-565E6.1--HYDIN	9	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1231	0.041	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH196_LUNG	1	1	0.1641	TRUE	456	1387	91	133	0	FALSE	ACH-000752
NCIH196_LUNG	AP003900.6--AC011718.2	5	18	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	7	0	0.77	1	0.0684	0.2461	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH196_LUNG	0.77	1	0.3145	TRUE	0	5	0	45	5	FALSE	ACH-000752
NCIH196_LUNG	CEP112--RP11-798G7.6	8	4	CEP112	33902	chr17:63746780:-	RP11-798G7.6	44875	chr17:43623171:+	ONLY_REF_SPLICE	YES	11	0	0.52	1	0.1094	0.0547	CEP112->centrosomal_protein_112,chr17:63631656-64188202:-,RP11-798G7.6->chr17:43623170-43640596:+	NCIH196_LUNG	0.52	1	0.1641	TRUE	0	0	0	1	0	TRUE	ACH-000752
NCIH196_LUNG	LPP--TPRG1	8	4	LPP	13531	chr3:188242575:+	TPRG1	64663	chr3:188844846:+	ONLY_REF_SPLICE	YES	51	4	0.19	0.75	0.1094	0.0547	GTEx&tcga_normals:2/3694=0.05%,NEIGHBORS[56543],LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1	NCIH196_LUNG	0.19	0.75	0.1641	FALSE	0	0	0	1	0	FALSE	ACH-000752
NCIH196_LUNG	RP11-680G10.1--GSE1	7	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	14	1	0.48	0.0957	0.082	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH196_LUNG	0.48	1	0.1777	TRUE	458	1351	185	561	0	FALSE	ACH-000752
NCIH196_LUNG	AP003900.6--AC011718.2	5	11	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0684	0.1504	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH196_LUNG	1	1	0.2188	TRUE	0	1	0	26	1	FALSE	ACH-000752
NCIH196_LUNG	PRR16--CTD-2334D19.1	7	2	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	7	0	0.56	1	0.0957	0.0273	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH196_LUNG	0.56	1	0.123	FALSE	21	45	1	60	0	FALSE	ACH-000752
NCIH196_LUNG	COL1A1--NPM1	5	5	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	7290	2	0	0.83	0.0684	0.0684	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	NCIH196_LUNG	0	0.83	0.1368	TRUE	0	0	0	31	0	FALSE	ACH-000752
NCIH196_LUNG	AP003900.6--AC011718.2	2	14	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.0273	0.1914	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH196_LUNG	0.89	1	0.2187	TRUE	0	0	0	21	0	FALSE	ACH-000752
NCIH196_LUNG	PRR16--CTD-2334D19.1	5	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	18	0	0.25	1	0.0684	0.0137	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH196_LUNG	0.25	1	0.0821	FALSE	56	216	12	147	0	FALSE	ACH-000752
NCIH196_LUNG	RP1-34H18.1--NAV3	5	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	3	1	0.67	0.0684	0.0137	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH196_LUNG	0.67	1	0.0821	TRUE	254	575	65	124	0	FALSE	ACH-000752
NCIH196_LUNG	SAMD5--SASH1	5	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	3	5	0.67	0.55	0.0684	0.0137	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NCIH196_LUNG	0.55	0.67	0.0821	TRUE	53	396	64	110	0	FALSE	ACH-000752
NCIH196_LUNG	AP000525.9--LA16c-60G3.6	5	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0684	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH196_LUNG	1	1	0.0684	TRUE	0	42	0	133	42	FALSE	ACH-000752
NCIH196_LUNG	RP11-120D5.1--MID1	3	8	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	92	0.79	0.11	0.041	0.1094	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH196_LUNG	0.11	0.79	0.1504	FALSE	2	31	0	60	0	FALSE	ACH-000752
NCIH196_LUNG	COL1A1--COL12A1	3	7	COL1A1	13458	chr17:48266317:-	COL12A1	80399	chr6:75797412:-	INCL_NON_REF_SPLICE	YES	6659	882	0	0.01	0.041	0.0957	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	NCIH196_LUNG	0	0.01	0.1367	TRUE	0	5	0	2	5	TRUE	ACH-000752
NCIH196_LUNG	XXbac-BPG252P9.9--IFI27	3	7	XXbac-BPG252P9.9	1221	chr6:30691434:-	IFI27	7882	chr14:94578049:+	INCL_NON_REF_SPLICE	YES	4534	1080	0	0.01	0.041	0.0957	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	NCIH196_LUNG	0	0.01	0.1367	TRUE	0	2	0	13	2	TRUE	ACH-000752
NCIH196_LUNG	RP11-120D5.1--MID1	3	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	92	0.64	0.09	0.041	0.082	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH196_LUNG	0.09	0.64	0.123	FALSE	16	356	14	466	0	FALSE	ACH-000752
NCIH196_LUNG	KANSL1--ARL17B	2	9	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	42	62	0.21	0.15	0.0273	0.1231	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH196_LUNG	0.15	0.21	0.1504	TRUE	105	90	7	93	0	FALSE	ACH-000752
NCIH196_LUNG	VIM--PPIA	4	0	VIM	2122	chr10:17271379:+	PPIA	12215	chr7:44836289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0547	0	VIM->chr10:17270258-17279592:+,vimentin,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	NCIH196_LUNG	1	1	0.0547	TRUE	0	0	0	6	0	TRUE	ACH-000752
NCIH196_LUNG	AP003900.6--AC011718.2	2	7	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	7	5	0.56	0.64	0.0273	0.0957	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH196_LUNG	0.56	0.64	0.123	TRUE	0	1	0	24	1	FALSE	ACH-000752
NCIH196_LUNG	COL12A1--COL1A1	3	2	COL12A1	59294	chr6:75797392:-	COL1A1	70881	chr17:48273538:-	INCL_NON_REF_SPLICE	NO	996	7591	0	0	0.041	0.0273	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,HGNC_GENEFAM,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	NCIH196_LUNG	0	0	0.0683	FALSE	0	0	0	1	0	FALSE	ACH-000752
NCIH196_LUNG	CTD-2337A12.1--CAST	3	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	16	1	0.24	0.041	0.0273	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH196_LUNG	0.24	1	0.0683	TRUE	347	1186	183	220	0	FALSE	ACH-000752
NCIH196_LUNG	VIM--TGFB1	3	0	VIM	2121	chr10:17271378:+	TGFB1	12716	chr19:41859305:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	GTEx&tcga_normals:2/3694=0.05%,VIM->chr10:17270258-17279592:+,vimentin,TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1	NCIH196_LUNG	1	1	0.041	TRUE	0	0	0	2	0	TRUE	ACH-000752
NCIH196_LUNG	CPQ--SDC2	2	3	CPQ	1176	chr8:97657630:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	29	1413	0.15	0	0.0273	0.041	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	NCIH196_LUNG	0	0.15	0.0683	FALSE	1	37	5	9	9	FALSE	ACH-000752
NCIH196_LUNG	RP11-155G15.2--RP11-1E3.1	2	3	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0.041	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH196_LUNG	1	1	0.0683	FALSE	46	201	11	112	0	FALSE	ACH-000752
NCIH196_LUNG	KANSL1--ARL17B	1	6	KANSL1	9741	chr17:44171926:-	ARL17B	40066	chr17:44388641:-	ONLY_REF_SPLICE	YES	34	9	0.17	0.44	0.0137	0.082	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH196_LUNG	0.17	0.44	0.0957	TRUE	13	9	0	5	0	FALSE	ACH-000752
NCIH196_LUNG	RP11-120D5.1--MID1	1	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	5	46	0.58	0.13	0.0137	0.082	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH196_LUNG	0.13	0.58	0.0957	FALSE	0	23	1	67	0	FALSE	ACH-000752
NCIH196_LUNG	CTD-2008L17.1--RP11-456O19.2	1	5	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0137	0.0684	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH196_LUNG	0.75	1	0.0821	FALSE	33	240	4	98	0	FALSE	ACH-000752
NCIH196_LUNG	CXorf23--RPS6KA3	2	1	CXorf23	10083	chrX:19953927:-	RPS6KA3	27661	chrX:20252932:-	ONLY_REF_SPLICE	YES	33	6	0.08	0.33	0.0273	0.0137	CXorf23->chrX:19930978-19988416:-,chromosome_X_open_reading_frame_23,RPS6KA3->chrX:20168029-20285523:-,ribosomal_protein_S6_kinase_A3	NCIH196_LUNG	0.08	0.33	0.041	TRUE	0	0	0	1	0	TRUE	ACH-000752
NCIH196_LUNG	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0273	0.0137	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH196_LUNG	1	1	0.041	FALSE	515	4851	409	746	0	FALSE	ACH-000752
NCIH196_LUNG	FAM101B--DAZ2	2	0	FAM101B	1104	chr17:295627:-	DAZ2	34677	chrY:25431585:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	FAM101B->chr17:289769-295730:-,family_with_sequence_similarity_101_member_B,DAZ2->chrY:25365594-25437503:+,deleted_in_azoospermia_2	NCIH196_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000752
NCIH196_LUNG	FUT8--POLR3F	2	0	FUT8	15359	chr14:66096324:+	POLR3F	31918	chr20:18453486:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,POLR3F->chr20:18447771-18465287:+,polymerase_(RNA)_III_subunit_F	NCIH196_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000752
NCIH196_LUNG	MIOS--COL28A1	2	0	MIOS	5013	chr7:7613827:+	COL28A1	35925	chr7:7516811:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	LOCAL_INVERSION:+:-:[31019],MIOS->chr7:7606503-7648560:+,missing_oocyte,_meiosis_regulator,_homolog_(Drosophila),COL28A1->Oncogene{Bushman},chr7:7395834-7575484:-,collagen_type_XXVIII_alpha_1	NCIH196_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000752
NCIH196_LUNG	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	1071	chr5:96519373:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH196_LUNG	1	1	0.0273	FALSE	1	1	0	4	0	FALSE	ACH-000752
NCIH196_LUNG	SUCO--NUDT19	2	0	SUCO	2149	chr1:172502637:+	NUDT19	32946	chr19:33200091:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	SUCO->SUN_domain_containing_ossification_factor,chr1:172501489-172580971:+,NUDT19->chr19:33182867-33204702:+,nudix_hydrolase_19	NCIH196_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000752
NCIH196_LUNG	PCDHGA3--UBE2D2	1	2	PCDHGA3	3424	chr5:140726024:+	UBE2D2	15030	chr5:138979957:+	ONLY_REF_SPLICE	NO	64	39	0.04	0.07	0.0137	0.0273	PCDHGA3->chr5:140723601-140892546:+,protocadherin_gamma_subfamily_A,_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	NCIH196_LUNG	0.04	0.07	0.041	TRUE	0	0	0	1	0	FALSE	ACH-000752
NCIH196_LUNG	PVT1--SNTB1	1	2	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	32	51	0.09	0.06	0.0137	0.0273	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH196_LUNG	0.06	0.09	0.041	TRUE	0	0	0	25	0	FALSE	ACH-000752
NCIH196_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0137	0.0273	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH196_LUNG	1	1	0.041	FALSE	192	492	57	212	0	FALSE	ACH-000752
NCIH196_LUNG	CAPZA2--RPS27A	1	1	CAPZA2	3371	chr7:116502704:+	RPS27A	26292	chr2:55459944:+	ONLY_REF_SPLICE	NO	127	12	0.02	0.14	0.0137	0.0137	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	NCIH196_LUNG	0.02	0.14	0.0274	TRUE	0	0	0	3	0	FALSE	ACH-000752
NCIH196_LUNG	PRR16--CTD-2334D19.1	1	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	NO	18	0	0.1	1	0.0137	0.0137	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH196_LUNG	0.1	1	0.0274	FALSE	1	13	0	24	0	FALSE	ACH-000752
NCIH196_LUNG	RP11-1L12.3--SLC5A12	1	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0137	0.0137	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	NCIH196_LUNG	0.29	1	0.0274	TRUE	3	101	0	60	0	FALSE	ACH-000752
NCIH196_LUNG	TMTC2--NAP1L1	1	1	TMTC2	1790	chr12:83081448:+	NAP1L1	31294	chr12:76454059:-	ONLY_REF_SPLICE	YES	198	1673	0.01	0	0.0137	0.0137	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellum=1},TMTC2->chr12:83080659-83528649:+,transmembrane_and_tetratricopeptide_repeat_containing_2,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	NCIH196_LUNG	0	0.01	0.0274	FALSE	0	0	0	1	0	FALSE	ACH-000752
NCIH196_LUNG	UGDH-AS1--SMIM14	1	1	UGDH-AS1	1320	chr4:39529958:+	SMIM14	13861	chr4:39606800:-	ONLY_REF_SPLICE	YES	8	114	0.2	0.02	0.0137	0.0137	NEIGHBORS_OVERLAP:+:-:[48377],UGDH-AS1->UGDH_antisense_RNA_1,chr4:39529639-39596327:+,SMIM14->chr4:39547950-39640710:-,small_integral_membrane_protein_14	NCIH196_LUNG	0.02	0.2	0.0274	FALSE	0	2	1	2	0	FALSE	ACH-000752
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPIA--IGKV2-14	391	264	RPIA	3457	chr2:88999582:+	IGKV2-14	14100	chr2:89377826:-	INCL_NON_REF_SPLICE	YES	115	0	0.85	1	4.3071	2.9081	RPIA->chr2:88991162-89050452:+,ribose_5-phosphate_isomerase_A,IGKV2-14->chr2:89377506-89378280:-,immunoglobulin_kappa_variable_2-14_(pseudogene)	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	7.2152	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM60A--ZNF384	239	57	FAM60A	2035	chr12:31478958:-	ZNF384	21334	chr12:6788691:-	ONLY_REF_SPLICE	YES	83	57	0.78	0.84	2.6327	0.6279	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,ZNF384->Oncogene{Bushman},chr12:6775643-6798738:-,zinc_finger_protein_384	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.84	3.2606	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WHSC1--IGH@	180	188	WHSC1	7864	chr4:1902978:+	IGH@	163957	chr14:106111126:-	INCL_NON_REF_SPLICE	YES	50	14	0.88	0.96	1.9828	2.0709	WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,IGH@->Oncogene{Bushman}	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.96	4.0537	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	161	64	IGH@	94353	chr14:106330425:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	YES	2	52	0.99	0.81	1.7735	0.705	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.99	2.4785	TRUE	0	0	0	3	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	146	67	IGH@	94754	chr14:106330024:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	YES	0	52	1	0.8	1.6083	0.738	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	2.3463	TRUE	0	0	0	3	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WHSC1--IGH@	56	188	WHSC1	7864	chr4:1902978:+	IGH@	155043	chr14:106209407:-	INCL_NON_REF_SPLICE	YES	50	3	0.83	0.99	0.6169	2.0709	WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,IGH@->Oncogene{Bushman}	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.99	2.6878	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KDM4C--UHRF2	78	49	KDM4C	2698	chr9:6758203:+	UHRF2	49969	chr9:6460573:+	ONLY_REF_SPLICE	YES	40	133	0.76	0.49	0.8592	0.5398	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,UHRF2->Oncogene{Bushman},chr9:6413151-6507054:+,ubiquitin_like_with_PHD_and_ring_finger_domains_2	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.76	1.399	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	68	36	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7491	0.3966	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1457	TRUE	508	994	45	981	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	54	81	IGH@	95370	chr14:106329408:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	YES	0	52	1	0.72	0.5948	0.8923	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	1	1.4871	TRUE	0	0	0	3	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	44	64	IGH@	93161	chr14:106331617:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	YES	5	52	0.96	0.68	0.4847	0.705	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	0.96	1.1897	TRUE	0	0	0	3	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	47	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5177	0.0771	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5948	FALSE	462	80	0	856	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBG1	48	1	AC104389.28	1084	chr11:5526799:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	0	6	1	0.89	0.5287	0.011	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.5397	FALSE	0	1	0	13	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPIA--IGKV2-14	7	156	RPIA	2401	chr2:88998062:+	IGKV2-14	14100	chr2:89377826:-	INCL_NON_REF_SPLICE	YES	96	0	0.63	1	0.0771	1.7184	RPIA->chr2:88991162-89050452:+,ribose_5-phosphate_isomerase_A,IGKV2-14->chr2:89377506-89378280:-,immunoglobulin_kappa_variable_2-14_(pseudogene)	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	1	1.7955	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	43	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	151	8	0.25	0.86	0.4737	0.0771	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.86	0.5508	TRUE	519	3926	326	965	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	37	16	MT-ND4	1947	chrM:11706:+	MT-RNR2	5392	chrM:1684:+	INCL_NON_REF_SPLICE	NO	22079	0	0	1	0.4076	0.1762	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.5838	FALSE	13	19	3	21	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	27	21	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5	0	0.91	1	0.2974	0.2313	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.5287	FALSE	43	37	8	105	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	27	20	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.94	1	0.2974	0.2203	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.5177	FALSE	515	4851	409	746	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--B2M	25	0	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2754	0	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2754	TRUE	0	0	0	28	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM60A--ZNF384	10	57	FAM60A	2035	chr12:31478958:-	ZNF384	21338	chr12:6788687:-	ONLY_REF_SPLICE	YES	83	54	0.45	0.55	0.1102	0.6279	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,ZNF384->Oncogene{Bushman},chr12:6775643-6798738:-,zinc_finger_protein_384	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.55	0.7381	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00152--AC093616.4	20	15	LINC00152	14196	chr2:87906288:+	AC093616.4	17233	chr2:88000503:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2203	0.1652	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3855	FALSE	0	0	0	14	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MZB1--IGJ	23	2	MZB1	1862	chr5:138724909:-	IGJ	8097	chr4:71532238:-	INCL_NON_REF_SPLICE	YES	9014	1071	0	0.02	0.2534	0.022	MZB1->chr5:138723169-138725770:-,marginal_zone_B_and_B1_cell_specific_protein,IGJ->chr4:71521258-71547534:-	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.2754	TRUE	0	0	0	1	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM60A--ZNF384	7	64	FAM60A	4052	chr12:31476878:-	ZNF384	21334	chr12:6788691:-	ONLY_REF_SPLICE	YES	115	57	0.38	0.55	0.0771	0.705	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,ZNF384->Oncogene{Bushman},chr12:6775643-6798738:-,zinc_finger_protein_384	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.55	0.7821	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	23	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2534	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2534	TRUE	0	0	0	518	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	20	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	16902	3	0	0.88	0.2203	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.88	0.2313	FALSE	230	193	14	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	14	16	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22530	63	0	0.32	0.1542	0.1762	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.32	0.3304	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM60A--ZNF384	1	61	FAM60A	2833	chr12:31478160:-	ZNF384	21334	chr12:6788691:-	ONLY_REF_SPLICE	YES	101	57	0.38	0.52	0.011	0.6719	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,ZNF384->Oncogene{Bushman},chr12:6775643-6798738:-,zinc_finger_protein_384	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.52	0.6829	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	15	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17044	3	0	0.84	0.1652	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.84	0.1762	FALSE	230	198	14	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMA3--KIAA0391	13	9	PSMA3	6638	chr14:58727738:+	KIAA0391	27508	chr14:35777200:+	ONLY_REF_SPLICE	YES	313	1	0.07	0.96	0.1432	0.0991	PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3,KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.96	0.2423	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	8	20	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	23434	0	0	1	0.0881	0.2203	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3084	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	12	2	MT-ND4	1201	chrM:10960:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	16555	0	0	1	0.1322	0.022	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1542	FALSE	13	19	3	21	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	29	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	21844	0	0	1	0.0551	0.3195	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3746	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	12	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1322	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1322	TRUE	0	0	0	81	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	2	36	IGH@	95370	chr14:106329408:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	0	1341	1	0.03	0.022	0.3966	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.4186	TRUE	0	0	0	6	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	10	4	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	24409	1532	0	0.01	0.1102	0.0441	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1543	FALSE	231	205	14	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	14	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	23477	3	0	0.88	0.0771	0.1542	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.88	0.2313	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	10	2	MT-ND4	1209	chrM:10968:+	MT-RNR2	5415	chrM:1707:+	INCL_NON_REF_SPLICE	NO	16901	0	0	1	0.1102	0.022	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1322	FALSE	13	19	3	21	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	5	21	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0551	0.2313	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2864	FALSE	467	2173	244	435	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	27	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	22056	0	0	1	0.033	0.2974	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3304	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0771	0.1102	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1873	FALSE	462	80	0	856	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	21	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19424	63	0	0.28	0.0441	0.2313	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.28	0.2754	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	21	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	23143	0	0	1	0.0441	0.2313	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2754	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	9	1	MT-ND4	1303	chrM:11062:+	MT-RNR2	5933	chrM:2225:+	INCL_NON_REF_SPLICE	YES	23234	10628	0	0	0.0991	0.011	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1101	FALSE	13	19	3	21	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	9	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1796	0	0.01	1	0.0991	0.011	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1101	FALSE	0	0	0	189	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	7	8	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	1	0.68	0.94	0.0771	0.0881	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	0.94	0.1652	FALSE	16	356	14	466	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	8	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	20448	3	0	0.77	0.0881	0.022	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.77	0.1101	FALSE	231	205	14	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	10	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	23288	1532	0	0.01	0.0661	0.1102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1763	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	6	10	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.94	0.0661	0.1102	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.1763	FALSE	26	124	4	93	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC093642.5--GARNL3	6	9	AC093642.5	6865	chr2:243064606:+	GARNL3	22176	chr9:130053447:+	ONLY_REF_SPLICE	YES	0	12	1	0.56	0.0661	0.0991	AC093642.5->chr2:243030784-243102304:+,GARNL3->GTPase_activating_Rap/RanGAP_domain_like_3,chr9:129986544-130155939:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.1652	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ND4L	8	1	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2144	0	0	1	0.0881	0.011	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0991	FALSE	1	1	0	107	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KDM4C--UHRF2	5	13	KDM4C	2698	chr9:6758203:+	UHRF2	51188	chr9:6475391:+	ONLY_REF_SPLICE	YES	40	198	0.31	0.08	0.0551	0.1432	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,UHRF2->Oncogene{Bushman},chr9:6413151-6507054:+,ubiquitin_like_with_PHD_and_ring_finger_domains_2	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.31	0.1983	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGFR3--MT-ND4L	7	4	FGFR3	10708	chr4:1809505:+	MT-ND4L	14804	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2941	0	0	1	0.0771	0.0441	FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1212	FALSE	0	0	0	1	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	15	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	23217	0	0	1	0.0441	0.1652	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2093	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	11	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7459	63	0	0.2	0.0551	0.1212	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.2	0.1763	FALSE	43	37	8	105	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	10	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	24563	0	0	1	0.0551	0.1102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1653	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	18	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	23082	0	0	1	0.033	0.1983	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2313	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	17	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	23174	0	0	1	0.033	0.1873	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2203	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	9	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	22530	1829	0	0.01	0.0551	0.0991	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1542	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	7	1	MT-ND4	1253	chrM:11012:+	MT-RNR2	5441	chrM:1733:+	INCL_NON_REF_SPLICE	YES	18306	0	0	1	0.0771	0.011	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0881	FALSE	13	19	3	21	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	4	13	MT-ND4	1789	chrM:11548:+	MT-RNR2	5386	chrM:1678:+	INCL_NON_REF_SPLICE	NO	23147	0	0	1	0.0441	0.1432	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1873	FALSE	13	19	3	21	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	13	MT-ND5	2514	chrM:13850:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4744	63	0	0.21	0.0441	0.1432	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.21	0.1873	FALSE	43	37	8	105	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	7	1	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	8273	3	0	0.73	0.0771	0.011	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.73	0.0881	FALSE	41	30	6	102	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	3	16	MT-ND4	1903	chrM:11662:+	MT-RNR2	5423	chrM:1715:+	INCL_NON_REF_SPLICE	YES	22388	0	0	1	0.033	0.1762	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2092	FALSE	13	19	3	21	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	7	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	25592	2	0	0.86	0.0551	0.0771	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.86	0.1322	FALSE	231	216	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	7	MT-ND5	1795	chrM:13131:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5473	63	0	0.16	0.0551	0.0771	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.16	0.1322	FALSE	43	37	8	105	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	5	7	MT-ND5	2750	chrM:14086:+	MT-ND6	6158	chrM:14328:-	INCL_NON_REF_SPLICE	YES	4	4723	0.75	0	0.0551	0.0771	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.75	0.1322	FALSE	26	124	4	93	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	5	7	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	4	4741	0.75	0	0.0551	0.0771	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.75	0.1322	FALSE	26	124	4	93	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	10	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	24840	0	0	1	0.0441	0.1102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1543	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	10	MT-ND4	1453	chrM:11212:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	25300	0	0	1	0.0441	0.1102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1543	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	10	MT-ND4	1452	chrM:11211:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	25432	0	0	1	0.0441	0.1102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1543	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	3	14	MT-ND4	1824	chrM:11583:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	22553	0	0	1	0.033	0.1542	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1872	FALSE	13	19	3	21	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	22	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	3	0	0.88	1	0.011	0.2423	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.2533	FALSE	407	2205	196	549	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	6	1	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	55	0	0.11	1	0.0661	0.011	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0771	FALSE	114	26	4	85	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16902	3	0	0.7	0.0661	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.7	0.0771	FALSE	230	193	14	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	18620	1854	0	0	0.0661	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0771	FALSE	231	204	14	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	6	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0661	TRUE	0	0	0	81	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0661	FALSE	13	9	0	364	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	10	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	24533	0	0	1	0.033	0.1102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1432	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	10	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	24573	0	0	1	0.033	0.1102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1432	FALSE	231	217	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	4	6	MT-ND5	2761	chrM:14097:+	MT-ND6	6169	chrM:14317:-	INCL_NON_REF_SPLICE	YES	1	4865	0.91	0	0.0441	0.0661	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.91	0.1102	FALSE	26	124	4	93	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	5	2	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1785	0	0	1	0.0551	0.022	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0771	FALSE	0	0	0	189	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	3	9	MT-ND4	1747	chrM:11506:+	MT-RNR2	5918	chrM:2210:+	INCL_NON_REF_SPLICE	YES	22983	10374	0	0	0.033	0.0991	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1321	FALSE	13	19	3	21	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMA3--KIAA0391	4	5	PSMA3	6638	chr14:58727738:+	KIAA0391	28428	chr14:35778120:+	ONLY_REF_SPLICE	YES	313	39	0.03	0.19	0.0441	0.0551	PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3,KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.19	0.0992	TRUE	0	0	0	1	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPAA1--MT-CO1	4	4	GPAA1	4212	chr8:145140704:+	MT-CO1	8270	chrM:6546:+	INCL_NON_REF_SPLICE	NO	1991	24226	0	0	0.0441	0.0441	GPAA1->chr8:145137493-145141119:+,glycosylphosphatidylinositol_anchor_attachment_1,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0882	FALSE	0	0	0	1	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	8	MT-ND4	1359	chrM:11118:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	25592	0	0	1	0.033	0.0881	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1211	FALSE	231	216	16	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	8	MT-ND5	2262	chrM:13598:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	5490	831	0	0.01	0.033	0.0881	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1211	FALSE	43	37	8	105	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0.0881	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1211	FALSE	462	80	0	856	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	6	MT-ND1	1303	chrM:3609:+	MT-RNR2	5007	chrM:1721:+	INCL_NON_REF_SPLICE	NO	81	0	0.1	1	0.033	0.0661	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.0991	FALSE	114	26	4	85	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	6	MT-ND1	1297	chrM:3603:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	76	0	0.11	1	0.033	0.0661	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0991	FALSE	114	26	4	85	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	6	MT-ND5	1785	chrM:13121:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5263	63	0	0.12	0.033	0.0661	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.12	0.0991	FALSE	43	37	8	105	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	1	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	17268	485	0	0.01	0.0441	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0551	FALSE	231	204	14	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0.011	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0551	FALSE	462	80	0	856	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	4	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0441	0.011	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0551	FALSE	416	2512	207	587	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRINA--RPS10	4	0	GRINA	2301	chr8:145065526:+	RPS10	7415	chr6:34393846:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	GRINA->chr8:145064226-145067583:+,glutamate_ionotropic_receptor_NMDA_type_subunit_associated_protein_1,RPS10->chr6:34385231-34393902:-,ribosomal_protein_S10	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0441	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	4	MT-ND5	1331	chrM:12667:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	8181	0	0	1	0.033	0.0441	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0771	FALSE	42	35	7	104	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBG1	2	7	AC104389.28	1302	chr11:5526581:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	2	6	0.82	0.6	0.022	0.0771	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.82	0.0991	FALSE	0	1	0	13	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	103	16	0.06	0.27	0.033	0.033	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.27	0.066	TRUE	267	562	48	632	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf21--RNF2	3	3	C1orf21	2529	chr1:184446737:+	RNF2	27782	chr1:185056684:+	ONLY_REF_SPLICE	YES	601	37	0.01	0.14	0.033	0.033	C1orf21->chr1:184356192-184598154:+,chromosome_1_open_reading_frame_21,RNF2->chr1:185014496-185071740:+,ring_finger_protein_2	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.14	0.066	FALSE	0	0	0	1	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-166B2.1--TNFRSF17	3	3	RP11-166B2.1	2212	chr16:12057748:-	TNFRSF17	15287	chr16:12060052:+	ONLY_REF_SPLICE	YES	76	6790	0.07	0	0.033	0.033	NEIGHBORS_OVERLAP:-:+:[2961],RP11-166B2.1->chr16:12021230-12070500:-,TNFRSF17->Oncogene{Bushman},chr16:12058964-12061925:+,tumor_necrosis_factor_receptor_superfamily_member_17	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.066	FALSE	0	0	0	3	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	3	2	AC104820.2	6557	chr2:182091266:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	14	151	0.26	0.03	0.033	0.022	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.26	0.055	FALSE	0	0	0	11	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-ND2	3	2	MT-CO1	1582	chrM:6485:+	MT-ND2	5999	chrM:4926:+	INCL_NON_REF_SPLICE	YES	21325	17781	0	0	0.033	0.022	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.055	FALSE	55	19	1	13	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-ND2	3	2	MT-CO1	1603	chrM:6506:+	MT-ND2	5988	chrM:4915:+	INCL_NON_REF_SPLICE	YES	21099	17773	0	0	0.033	0.022	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.055	FALSE	55	19	1	13	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-TL1	3	2	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	NO	1	0	0.83	1	0.033	0.022	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.055	FALSE	210	95	5	49	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	3	2	MT-ND4	1451	chrM:11210:+	MT-RNR2	5919	chrM:2211:+	INCL_NON_REF_SPLICE	YES	25306	10392	0	0	0.033	0.022	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.055	FALSE	13	19	3	21	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-ND2	3	1	MT-CO1	1533	chrM:6436:+	MT-ND2	5968	chrM:4895:+	INCL_NON_REF_SPLICE	NO	22387	17878	0	0	0.033	0.011	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.044	FALSE	55	19	1	13	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-ND2	3	1	MT-CO1	1562	chrM:6465:+	MT-ND2	6171	chrM:5098:+	INCL_NON_REF_SPLICE	YES	21571	9614	0	0	0.033	0.011	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.044	FALSE	55	19	1	13	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	1	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	55	10304	0.07	0	0.033	0.011	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.044	FALSE	120	26	5	87	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	1	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	55	0	0.07	1	0.033	0.011	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.044	FALSE	114	26	4	85	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	17193	91	0	0.04	0.033	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.044	FALSE	231	204	14	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	17938	0	0	1	0.033	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.044	FALSE	231	204	14	283	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	3	1	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	866	0	0	1	0.033	0.011	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.044	FALSE	0	1	0	48	1	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00152--AC093616.4	2	4	LINC00152	1278	chr2:87755164:+	AC093616.4	17233	chr2:88000503:+	ONLY_REF_SPLICE	YES	625	0	0.01	1	0.022	0.0441	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0661	FALSE	0	0	0	11	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC093642.5--GARNL3	2	2	AC093642.5	2310	chr2:243037178:+	GARNL3	22176	chr9:130053447:+	ONLY_REF_SPLICE	YES	6	12	0.4	0.25	0.022	0.022	AC093642.5->chr2:243030784-243102304:+,GARNL3->GTPase_activating_Rap/RanGAP_domain_like_3,chr9:129986544-130155939:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.4	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMA3--KIAA0391	1	6	PSMA3	5109	chr14:58724716:+	KIAA0391	27508	chr14:35777200:+	ONLY_REF_SPLICE	NO	420	1	0.02	0.88	0.011	0.0661	PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3,KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.88	0.0771	TRUE	0	0	0	1	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGEF38--PPA2	2	0	ARHGEF38	1342	chr4:106474118:+	PPA2	43786	chr4:106320321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_v2:{count=2;pct=0.02%;dist=Small_Intestine_-_Terminal_Ileum=1,Pancreas=1},LOCAL_INVERSION:+:-:[78539],ARHGEF38->Rho_guanine_nucleotide_exchange_factor_38,chr4:106473777-106629250:+,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	8	0	1	1	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf63--NFIL3	2	0	C1orf63	8720	chr1:25594231:-	NFIL3	21051	chr9:94173188:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,NFIL3->chr9:94171327-94186144:-,nuclear_factor,_interleukin_3_regulated	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAMK2D--CBFA2T2	2	0	CAMK2D	3019	chr4:114680476:-	CBFA2T2	39612	chr20:32194762:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	CAMK2D->Oncogene{Bushman},calcium/calmodulin_dependent_protein_kinase_II_delta,chr4:114372188-114683083:-,CBFA2T2->CBFA2/RUNX1_translocation_partner_2,chr20:32077881-32237842:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	2	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	FALSE	0	26	0	50	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	2	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	FALSE	0	24	0	62	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	3	14	2	43	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PET112--LINC01021	2	0	PET112	13991	chr4:152625003:-	LINC01021	37947	chr5:27496056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PET112->chr4:152591656-152682175:-,LINC01021->chr5:27472399-27496508:+,long_intergenic_non-protein_coding_RNA_1021	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PGK1--SH3BGRL	2	0	PGK1	1085	chrX:77320769:+	SH3BGRL	21962	chrX:80532483:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1,SH3BGRL->SH3_domain_binding_glutamate_rich_protein_like,chrX:80457442-80554046:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCARB1--UBC	2	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	55	66	6	101	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD5--PHF15	2	0	SMAD5	1118	chr5:135468651:+	PHF15	26093	chr5:133871548:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	SMAD5->SMAD_family_member_5,chr5:135468534-135524435:+,PHF15->chr5:133860003-133918918:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	FALSE	272	151	14	158	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	3	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	5	184	0.44	0.02	0.011	0.033	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.44	0.044	FALSE	0	0	0	19	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	2	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	7	184	0.3	0.02	0.011	0.022	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.3	0.033	FALSE	0	1	0	18	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--SRSF1	1	2	CHD2	6529	chr15:93444529:+	SRSF1	62155	chr17:56082402:-	ONLY_REF_SPLICE	YES	60	1109	0.05	0	0.011	0.022	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.033	FALSE	1	2	0	9	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF3H--RAD21	1	2	EIF3H	7051	chr8:117738255:-	RAD21	24431	chr8:117879000:-	ONLY_REF_SPLICE	YES	3184	38	0	0.07	0.011	0.022	LOCAL_REARRANGEMENT:-:[79010],EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.033	FALSE	0	0	0	7	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACSL5--VTI1A	1	1	ACSL5	8121	chr10:114168279:+	VTI1A	39568	chr10:114575049:+	ONLY_REF_SPLICE	NO	60	33	0.03	0.06	0.011	0.011	NEIGHBORS[18618],ACSL5->Oncogene{Bushman},acyl-CoA_synthetase_long-chain_family_member_5,chr10:114133776-114188138:+,VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.06	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLIC1--RPL7	1	1	CLIC1	4985	chr6:31701613:-	RPL7	14663	chr8:74203896:-	ONLY_REF_SPLICE	YES	2866	10252	0	0	0.011	0.011	CLIC1->chloride_intracellular_channel_1,chr6:31698358-31707540:-,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.022	FALSE	0	0	0	12	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MKLN1-AS1--POGZ	1	1	MKLN1-AS1	3457	chr7:130792479:-	POGZ	23224	chr1:151414681:-	ONLY_REF_SPLICE	YES	70	19	0.03	0.1	0.011	0.011	MKLN1-AS1->chr7:130626519-130794935:-,POGZ->chr1:151375200-151431941:-,pogo_transposable_element_with_ZNF_domain	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.1	0.022	TRUE	0	0	0	1	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT6--NF1	1	1	MLLT6	18677	chr17:36881229:+	NF1	81450	chr17:29676138:+	ONLY_REF_SPLICE	YES	361	29	0.01	0.06	0.011	0.011	MLLT6->Oncogene{Bushman},chr17:36861795-36886056:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_6,NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--KLF2	1	1	OAZ1	1259	chr19:2269743:+	KLF2	10043	chr19:16437667:+	ONLY_REF_SPLICE	NO	4137	110	0	0.02	0.011	0.011	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=3;pct=0.03%;dist=Whole_Blood=2,Lung=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,KLF2->Kruppel-like_factor_2,chr19:16435628-16438685:+	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.022	FALSE	3	1	0	1	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPAG16--VWC2L	1	1	SPAG16	24747	chr2:215013990:+	VWC2L	37163	chr2:215301353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0.011	NEIGHBORS[564],SPAG16->chr2:214149113-215275225:+,sperm_associated_antigen_16,VWC2L->chr2:215275789-215443683:+,von_Willebrand_factor_C_domain_containing_protein_2-like	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	FALSE	3	0	0	4	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	1	1	TIMM23	4782	chr10:51612904:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	196	8	0.01	0.2	0.011	0.011	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.2	0.022	FALSE	4	2	0	9	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--CTBP1	1	1	YWHAE	1332	chr17:1303341:-	CTBP1	16917	chr4:1235307:-	ONLY_REF_SPLICE	NO	1579	90	0	0.02	0.011	0.011	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.022	FALSE	0	1	0	2	0	FALSE	ACH-000658
KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF19--SHPK	1	1	ZNF19	2256	chr16:71580180:-	SHPK	32476	chr17:3495677:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.011	0.011	ZNF19->chr16:71498453-71598992:-,zinc_finger_protein_19,SHPK->chr17:3468738-3539543:-,chr17:3511556-3539616:-,sedoheptulokinase	KMS18_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000658
KYSE180_OESOPHAGUS	MT-ND4--MT-ATP8	110	3	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	37919	1980	0	0.05	1.1012	0.03	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE180_OESOPHAGUS	0	0.05	1.1312	FALSE	231	217	16	283	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND6--MT-TE	79	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7909	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE180_OESOPHAGUS	1	1	0.7909	FALSE	499	1288	110	792	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	TIMM23B--LINC00843	58	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.5806	0.2603	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KYSE180_OESOPHAGUS	0.98	1	0.8409	TRUE	508	994	45	981	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND6--MT-TE	49	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4905	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE180_OESOPHAGUS	1	1	0.4905	FALSE	499	1288	110	792	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RDH10--PSTPIP2	44	0	RDH10	9049	chr8:74236120:+	PSTPIP2	29968	chr18:43563894:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4405	0	RDH10->chr8:74206847-74237516:+,retinol_dehydrogenase_10_(all-trans),PSTPIP2->chr18:43563502-43652238:-,proline-serine-threonine_phosphatase_interacting_protein_2	KYSE180_OESOPHAGUS	1	1	0.4405	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND5--MT-ATP8	41	4	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8226	8	0.01	0.85	0.4105	0.04	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE180_OESOPHAGUS	0.01	0.85	0.4505	FALSE	43	37	8	105	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	TIMM23--RP11-464F9.1	41	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	535	3	0.07	0.93	0.4105	0.02	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KYSE180_OESOPHAGUS	0.07	0.93	0.4305	TRUE	519	3926	326	965	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	33	23	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	18	1	0.76	0.98	0.3304	0.2303	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.76	0.98	0.5607	FALSE	344	821	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	33	3	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	2	0.95	0.95	0.3304	0.03	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.95	0.95	0.3604	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND6--MT-TE	32	2	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.3204	0.02	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE180_OESOPHAGUS	0.89	1	0.3404	FALSE	499	1288	110	792	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND6--MT-TE	32	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.3204	0.02	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE180_OESOPHAGUS	0.89	1	0.3404	FALSE	499	1288	110	792	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	ZNF555--RP11-148B18.3	31	2	ZNF555	1141	chr19:2841573:+	RP11-148B18.3	15082	chr1:94798865:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3103	0.02	ZNF555->chr19:2841433-2860482:+,zinc_finger_protein_555,RP11-148B18.3->chr1:94798823-94800404:+	KYSE180_OESOPHAGUS	1	1	0.3303	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	29	9	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	3	21	0.93	0.64	0.2903	0.0901	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.64	0.93	0.3804	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	28	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	24	1	0.56	0.97	0.2803	0.03	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.56	0.97	0.3103	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND5--MT-ATP8	25	15	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.2503	0.1502	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE180_OESOPHAGUS	0.91	1	0.4005	FALSE	43	37	8	105	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RP11-680G10.1--GSE1	26	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	24	1	0.6	0.2603	0.1001	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE180_OESOPHAGUS	0.6	1	0.3604	TRUE	465	1949	224	605	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-TA--MT-TC	28	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2803	0.01	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE180_OESOPHAGUS	1	1	0.2903	FALSE	462	80	0	856	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	15	51	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	61	1	0.52	0.99	0.1502	0.5106	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.52	0.99	0.6608	FALSE	344	826	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	24	9	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	2	20	0.94	0.62	0.2403	0.0901	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.62	0.94	0.3304	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	25	3	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	234	0	0.11	1	0.2503	0.03	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.11	1	0.2803	FALSE	344	827	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	SMURF1--KPNA7	24	7	SMURF1	1375	chr7:98741349:-	KPNA7	35614	chr7:98782785:-	ONLY_REF_SPLICE	YES	31	2	0.5	0.94	0.2403	0.0701	LOCAL_REARRANGEMENT:-:[29474],SMURF1->SMAD_specific_E3_ubiquitin_protein_ligase_1,chr7:98625061-98741723:-,KPNA7->chr7:98771197-98805129:-,karyopherin_subunit_alpha_7	KYSE180_OESOPHAGUS	0.5	0.94	0.3104	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	24	4	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	3	4	0.9	0.88	0.2403	0.04	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.88	0.9	0.2803	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	23	8	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	24	0.97	0.56	0.2303	0.0801	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.56	0.97	0.3104	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	19	20	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	18	29	0.68	0.57	0.1902	0.2002	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.57	0.68	0.3904	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	21	10	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2861	0	0.01	1	0.2102	0.1001	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.01	1	0.3103	FALSE	344	827	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	18	20	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	22	29	0.63	0.57	0.1802	0.2002	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.57	0.63	0.3804	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	CTD-3006G17.2--SLC7A7	16	24	CTD-3006G17.2	3490	chr14:28142235:-	SLC7A7	22419	chr14:23249260:-	ONLY_REF_SPLICE	YES	7	1	0.85	0.98	0.1602	0.2403	CTD-3006G17.2->chr14:27727923-28314492:-,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	KYSE180_OESOPHAGUS	0.85	0.98	0.4005	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	HSPBP1--ZSWIM6	21	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2102	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	KYSE180_OESOPHAGUS	1	1	0.2102	TRUE	47	32	1	28	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	C15orf57--CBX3	16	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	88	61	0.27	0.34	0.1602	0.1602	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KYSE180_OESOPHAGUS	0.27	0.34	0.3204	TRUE	267	562	48	632	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	15	20	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	2558	0	0.01	1	0.1502	0.2002	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.01	1	0.3504	FALSE	344	827	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	PLXDC1--TAF13	20	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2002	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	KYSE180_OESOPHAGUS	1	1	0.2002	TRUE	7	10	0	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	3	64	MT-ND4	1514	chrM:11273:+	MT-ND4L	5446	chrM:10537:+	INCL_NON_REF_SPLICE	YES	2389	0	0.03	1	0.03	0.6407	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.03	1	0.6707	FALSE	344	827	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RP11-6N13.1--CTD-2374C24.1	16	12	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.1602	0.1201	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	KYSE180_OESOPHAGUS	0.9	1	0.2803	TRUE	5	4	0	46	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	3	62	MT-ND4	1531	chrM:11290:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	2916	1	0.02	0.98	0.03	0.6207	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.02	0.98	0.6507	FALSE	344	827	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	7	39	MT-CO3	1642	chrM:9848:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	5	106	0.9	0.3	0.0701	0.3904	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.3	0.9	0.4605	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RP11-385J1.2--KCNMB2	12	19	RP11-385J1.2	1917	chr3:178577277:-	KCNMB2	20856	chr3:178525131:+	ONLY_REF_SPLICE	YES	109	0	0.22	1	0.1201	0.1902	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	KYSE180_OESOPHAGUS	0.22	1	0.3103	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND6--MT-TE	16	2	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.82	1	0.1602	0.02	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE180_OESOPHAGUS	0.82	1	0.1802	FALSE	499	1288	110	792	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	11	21	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	38	23	0.46	0.58	0.1101	0.2102	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.46	0.58	0.3203	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	15	2	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	38	1	0.31	0.94	0.1502	0.02	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.31	0.94	0.1702	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	14	4	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	37	1	0.33	0.95	0.1402	0.04	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.33	0.95	0.1802	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ATP8	14	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	38149	8	0	0.69	0.1402	0.04	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE180_OESOPHAGUS	0	0.69	0.1802	FALSE	231	217	16	283	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	ABR--NXN	13	7	ABR	13685	chr17:1003877:-	NXN	53249	chr17:729318:-	ONLY_REF_SPLICE	YES	68	224	0.23	0.08	0.1301	0.0701	GTEx&tcga_normals:2/3694=0.05%,{Klijn_CCL:Head-Neck=1},NEIGHBORS[23748],ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,NXN->chr17:702553-883010:-,nucleoredoxin	KYSE180_OESOPHAGUS	0.08	0.23	0.2002	FALSE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	3	46	MT-ND4	1112	chrM:10871:+	MT-ND4L	5464	chrM:10555:+	INCL_NON_REF_SPLICE	NO	39	0	0.56	1	0.03	0.4605	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.56	1	0.4905	FALSE	344	826	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RP11-123O10.4--GRIP1	13	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1301	0.0601	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYSE180_OESOPHAGUS	1	1	0.1902	FALSE	416	2512	207	587	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	9	21	MT-CO3	1153	chrM:9359:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	29	29	0.51	0.51	0.0901	0.2102	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.51	0.51	0.3003	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ATP8	14	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1402	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE180_OESOPHAGUS	1	1	0.1402	FALSE	230	193	14	283	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-TA--MT-TC	14	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1402	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE180_OESOPHAGUS	1	1	0.1402	FALSE	462	80	0	856	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	11	10	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	1	36	0.95	0.37	0.1101	0.1001	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.37	0.95	0.2102	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	HSPBP1--GRK5	13	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1301	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KYSE180_OESOPHAGUS	1	1	0.1301	TRUE	1	39	0	134	39	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	13	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1301	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	1	1	0.1301	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	4	36	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	22	1	0.65	0.98	0.04	0.3604	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.65	0.98	0.4004	FALSE	344	826	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	10	10	MT-CO3	1047	chrM:9253:+	MT-ATP6	5189	chrM:8931:+	INCL_NON_REF_SPLICE	YES	0	146	1	0.12	0.1001	0.1001	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.12	1	0.2002	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1201	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KYSE180_OESOPHAGUS	1	1	0.1201	TRUE	0	0	0	434	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ATP6--MT-CO1	11	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	20454	45992	0	0	0.1101	0.03	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE180_OESOPHAGUS	0	0	0.1401	FALSE	183	104	9	328	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	3	33	MT-CO3	1322	chrM:9528:+	MT-ATP6	5065	chrM:8807:+	INCL_NON_REF_SPLICE	NO	23	152	0.61	0.19	0.03	0.3304	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.19	0.61	0.3604	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	5	25	MT-CO3	1149	chrM:9355:+	MT-ATP6	5180	chrM:8922:+	INCL_NON_REF_SPLICE	YES	25	132	0.55	0.19	0.0501	0.2503	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.19	0.55	0.3004	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	4	29	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	272	0	0.11	1	0.04	0.2903	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.11	1	0.3303	FALSE	344	827	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND6--MT-TE	11	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1101	0.01	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE180_OESOPHAGUS	1	1	0.1201	FALSE	499	1288	110	792	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	5	24	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	18	114	0.62	0.2	0.0501	0.2403	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.2	0.62	0.2904	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	5	23	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	38	30	0.42	0.48	0.0501	0.2303	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.42	0.48	0.2804	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	9	7	MT-CO3	1061	chrM:9267:+	MT-ATP6	5343	chrM:9085:+	INCL_NON_REF_SPLICE	YES	1	13	0.94	0.55	0.0901	0.0701	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.55	0.94	0.1602	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	9	7	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	119	0	0.12	1	0.0901	0.0701	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.12	1	0.1602	FALSE	344	826	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RP11-353N4.6--SEC22B	10	2	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	111	279	0.1	0.04	0.1001	0.02	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	KYSE180_OESOPHAGUS	0.04	0.1	0.1201	TRUE	49	42	7	43	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	7	13	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	4	15	0.83	0.57	0.0701	0.1301	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.57	0.83	0.2002	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	8	9	MT-CO3	1099	chrM:9305:+	MT-ATP6	5328	chrM:9070:+	INCL_NON_REF_SPLICE	YES	2	18	0.89	0.49	0.0801	0.0901	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.49	0.89	0.1702	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	5	21	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	39	0	0.4	1	0.0501	0.2102	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.4	1	0.2603	FALSE	344	826	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	DHX9--EP300	9	4	DHX9	24576	chr1:182853948:+	EP300	40225	chr22:41536144:+	ONLY_REF_SPLICE	YES	1263	46	0.01	0.22	0.0901	0.04	{Klijn_CCL:Head-Neck=1},DHX9->DEAH-box_helicase_9,Oncogene{Bushman},chr1:182808504-182856886:+,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	KYSE180_OESOPHAGUS	0.01	0.22	0.1301	TRUE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	7	12	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	3	108	0.86	0.15	0.0701	0.1201	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.15	0.86	0.1902	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	8	8	MT-CO3	1038	chrM:9244:+	MT-ATP6	5225	chrM:8967:+	INCL_NON_REF_SPLICE	YES	0	39	1	0.29	0.0801	0.0801	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.29	1	0.1602	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	4	23	MT-CO3	1138	chrM:9344:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	18	37	0.6	0.42	0.04	0.2303	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.42	0.6	0.2703	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	TNFAIP8--HSD17B4	7	11	TNFAIP8	1216	chr5:118604602:+	HSD17B4	22456	chr5:118809603:+	ONLY_REF_SPLICE	YES	17	115	0.51	0.14	0.0701	0.1101	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	KYSE180_OESOPHAGUS	0.14	0.51	0.1802	FALSE	0	2	0	7	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	8	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	18	3	0.44	0.82	0.0801	0.0601	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.44	0.82	0.1402	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	5	18	MT-CO3	1150	chrM:9356:+	MT-ATP6	5349	chrM:9091:+	INCL_NON_REF_SPLICE	YES	26	8	0.47	0.74	0.0501	0.1802	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.47	0.74	0.2303	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	7	10	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2916	0	0.01	1	0.0701	0.1001	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.01	1	0.1702	FALSE	344	827	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ATP8	9	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0901	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE180_OESOPHAGUS	1	1	0.0901	FALSE	230	198	14	283	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND5--MT-ATP8	8	4	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	11541	0	0	1	0.0801	0.04	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE180_OESOPHAGUS	0	1	0.1201	FALSE	43	37	8	105	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RP11-680G10.1--GSE1	6	12	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	13	1	0.58	0.0601	0.1201	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE180_OESOPHAGUS	0.58	1	0.1802	TRUE	458	1351	185	561	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	3	23	MT-CO3	1220	chrM:9426:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	36	29	0.42	0.47	0.03	0.2303	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.42	0.47	0.2603	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	3	23	MT-CO3	1123	chrM:9329:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	12	106	0.68	0.2	0.03	0.2303	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.2	0.68	0.2603	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RP11-385J1.2--KCNMB2	3	23	RP11-385J1.2	2989	chr3:178559333:-	KCNMB2	20856	chr3:178525131:+	ONLY_REF_SPLICE	YES	110	0	0.19	1	0.03	0.2303	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	KYSE180_OESOPHAGUS	0.19	1	0.2603	TRUE	0	1	0	1	1	TRUE	ACH-000693
KYSE180_OESOPHAGUS	AP003900.6--AP000345.1	8	2	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	8	0	0.56	1	0.0801	0.02	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	KYSE180_OESOPHAGUS	0.56	1	0.1001	TRUE	0	8	0	37	1	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	4	18	MT-CO3	1158	chrM:9364:+	MT-ATP6	5357	chrM:9099:+	INCL_NON_REF_SPLICE	YES	33	6	0.4	0.79	0.04	0.1802	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.4	0.79	0.2202	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	6	10	MT-CO3	1048	chrM:9254:+	MT-ATP6	5198	chrM:8940:+	INCL_NON_REF_SPLICE	YES	1	157	0.94	0.09	0.0601	0.1001	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.09	0.94	0.1602	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	6	9	MT-CO3	1051	chrM:9257:+	MT-ATP6	5269	chrM:9011:+	INCL_NON_REF_SPLICE	YES	1	30	0.94	0.33	0.0601	0.0901	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.33	0.94	0.1502	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	3	21	MT-ND4	1649	chrM:11408:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	6802	0	0	1	0.03	0.2102	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0	1	0.2402	FALSE	344	827	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	7	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	18	2	0.38	0.85	0.0701	0.04	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.38	0.85	0.1101	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	6	8	MT-CO3	1083	chrM:9289:+	MT-ATP6	5312	chrM:9054:+	INCL_NON_REF_SPLICE	YES	3	23	0.82	0.38	0.0601	0.0801	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.38	0.82	0.1402	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ATP8	6	8	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	38254	0	0	1	0.0601	0.0801	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE180_OESOPHAGUS	0	1	0.1402	FALSE	231	217	16	283	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	3	20	MT-ND4	1269	chrM:11028:+	MT-ND4L	5644	chrM:10735:+	INCL_NON_REF_SPLICE	YES	194	0	0.11	1	0.03	0.2002	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.11	1	0.2302	FALSE	344	827	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RPS6KA5--ZBP1	7	4	RPS6KA5	5050	chr14:91444650:-	ZBP1	30244	chr20:56190636:-	ONLY_REF_SPLICE	YES	27	1	0.29	0.92	0.0701	0.04	{Klijn_CCL:Head-Neck=1},RPS6KA5->chr14:91336799-91526980:-,ribosomal_protein_S6_kinase_A5,ZBP1->Z-DNA_binding_protein_1,chr20:56178902-56195632:-	KYSE180_OESOPHAGUS	0.29	0.92	0.1101	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND5--MT-ATP8	7	3	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11733	252	0	0.04	0.0701	0.03	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE180_OESOPHAGUS	0	0.04	0.1001	FALSE	43	37	8	105	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	4	14	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	90	0	0.17	1	0.04	0.1402	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.17	1	0.1802	FALSE	344	826	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	3	18	MT-ND4	1277	chrM:11036:+	MT-ND4L	5652	chrM:10743:+	INCL_NON_REF_SPLICE	YES	201	0	0.09	1	0.03	0.1802	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.09	1	0.2102	FALSE	344	827	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	4	12	MT-CO3	1089	chrM:9295:+	MT-ATP6	5156	chrM:8898:+	INCL_NON_REF_SPLICE	YES	3	107	0.84	0.13	0.04	0.1201	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.13	0.84	0.1601	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	7	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	1	1	0.0701	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	4	12	MT-CO3	1090	chrM:9296:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	3	37	0.84	0.3	0.04	0.1201	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.3	0.84	0.1601	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-CO1	4	12	MT-CO3	1642	chrM:9848:+	MT-CO1	5101	chrM:6220:+	INCL_NON_REF_SPLICE	NO	1506	35303	0.01	0	0.04	0.1201	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1762],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE180_OESOPHAGUS	0	0.01	0.1601	FALSE	4	27	0	4	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	7	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	1	1	0.0701	FALSE	344	821	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	5	7	MT-CO3	1039	chrM:9245:+	MT-ATP6	5246	chrM:8988:+	INCL_NON_REF_SPLICE	YES	0	33	1	0.27	0.0501	0.0701	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.27	1	0.1202	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	4	11	MT-CO3	1090	chrM:9296:+	MT-ATP6	5262	chrM:9004:+	INCL_NON_REF_SPLICE	YES	3	31	0.83	0.33	0.04	0.1101	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.33	0.83	0.1501	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND6--MT-TE	6	3	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.0601	0.03	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE180_OESOPHAGUS	0.64	1	0.0901	FALSE	499	1288	110	792	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	NRIP1--AF127936.7	6	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.0601	0.03	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE180_OESOPHAGUS	0.6	1	0.0901	FALSE	125	705	46	456	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	TNFAIP8--HSD17B4	3	15	TNFAIP8	3791	chr5:118669326:+	HSD17B4	22456	chr5:118809603:+	ONLY_REF_SPLICE	YES	37	115	0.33	0.14	0.03	0.1502	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	KYSE180_OESOPHAGUS	0.14	0.33	0.1802	FALSE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	C15orf57--CBX3	4	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	86	62	0.14	0.18	0.04	0.1001	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KYSE180_OESOPHAGUS	0.14	0.18	0.1401	TRUE	267	562	48	632	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	FNDC3B--RP11-298O21.3	6	2	FNDC3B	14849	chr3:171969331:+	RP11-298O21.3	49350	chr3:167584675:-	ONLY_REF_SPLICE	YES	87	0	0.08	1	0.0601	0.02	FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,RP11-298O21.3->chr3:167584288-167588765:-	KYSE180_OESOPHAGUS	0.08	1	0.0801	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	6	2	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	40	0	0.17	1	0.0601	0.02	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.17	1	0.0801	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	4	10	MT-CO3	1083	chrM:9289:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	3	106	0.82	0.12	0.04	0.1001	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.12	0.82	0.1401	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	6	2	MT-CO3	1396	chrM:9602:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	26	1	0.24	0.89	0.0601	0.02	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.24	0.89	0.0801	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-CO1	5	6	MT-CO3	1220	chrM:9426:+	MT-CO1	5438	chrM:6557:+	INCL_NON_REF_SPLICE	YES	21707	45974	0	0	0.0501	0.0601	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1762],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE180_OESOPHAGUS	0	0	0.1102	FALSE	4	27	0	4	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ATP8	3	14	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	143	0	0.11	1	0.03	0.1402	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE180_OESOPHAGUS	0.11	1	0.1702	FALSE	213	207	15	279	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	4	9	MT-CO3	1047	chrM:9253:+	MT-ATP6	5265	chrM:9007:+	INCL_NON_REF_SPLICE	YES	0	31	1	0.3	0.04	0.0901	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.3	1	0.1301	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	5	4	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	3	5	0.75	0.64	0.0501	0.04	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.64	0.75	0.0901	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	5	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	18	2	0.33	0.82	0.0501	0.04	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.33	0.82	0.0901	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	5	4	MT-CO3	1393	chrM:9599:+	MT-ATP6	5454	chrM:9196:+	INCL_NON_REF_SPLICE	YES	26	1	0.26	0.9	0.0501	0.04	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.26	0.9	0.0901	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-CO1	5	4	MT-CO3	1220	chrM:9426:+	MT-CO1	5769	chrM:6888:+	INCL_NON_REF_SPLICE	NO	21707	43870	0	0	0.0501	0.04	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1762],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE180_OESOPHAGUS	0	0	0.0901	FALSE	4	27	0	4	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND3--MT-TG	6	0	MT-ND3	1063	chrM:10121:+	MT-TG	4390	chrM:10034:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0601	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	KYSE180_OESOPHAGUS	1	1	0.0601	FALSE	97	9	0	14	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ATP8	5	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	36910	252	0	0.03	0.0501	0.04	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE180_OESOPHAGUS	0	0.03	0.0901	FALSE	231	217	16	283	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	4	8	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	226	0	0.05	1	0.04	0.0801	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.05	1	0.1201	FALSE	344	827	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	5	3	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	30	1	0.21	0.0501	0.03	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.21	1	0.0801	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-TW--MT-ND2	5	3	MT-TW	1004	chrM:5515:+	MT-ND2	4879	chrM:5280:+	INCL_NON_REF_SPLICE	YES	0	143	1	0.05	0.0501	0.03	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KYSE180_OESOPHAGUS	0.05	1	0.0801	FALSE	14	0	0	19	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	5	2	MT-CO3	1192	chrM:9398:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	41	1	0.15	0.88	0.0501	0.02	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.15	0.88	0.0701	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	3	10	MT-CO3	1083	chrM:9289:+	MT-ATP6	5222	chrM:8964:+	INCL_NON_REF_SPLICE	YES	3	42	0.81	0.24	0.03	0.1001	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.24	0.81	0.1301	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	PRR16--CTD-2334D19.1	5	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	20	0	0.26	1	0.0501	0.02	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	KYSE180_OESOPHAGUS	0.26	1	0.0701	FALSE	56	216	12	147	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	3	9	MT-CO3	1085	chrM:9291:+	MT-ATP6	5314	chrM:9056:+	INCL_NON_REF_SPLICE	YES	3	22	0.8	0.35	0.03	0.0901	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.35	0.8	0.1201	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	3	9	MT-CO3	1063	chrM:9269:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	29	0.92	0.29	0.03	0.0901	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.29	0.92	0.1201	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	3	9	MT-CO3	1051	chrM:9257:+	MT-ATP6	5262	chrM:9004:+	INCL_NON_REF_SPLICE	YES	1	31	0.92	0.28	0.03	0.0901	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.28	0.92	0.1201	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	3	9	MT-CO3	1072	chrM:9278:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	29	0.92	0.29	0.03	0.0901	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.29	0.92	0.1201	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	3	9	MT-CO3	1075	chrM:9281:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	29	0.92	0.29	0.03	0.0901	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.29	0.92	0.1201	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	3	8	MT-CO3	1038	chrM:9244:+	MT-ATP6	5188	chrM:8930:+	INCL_NON_REF_SPLICE	YES	0	144	1	0.07	0.03	0.0801	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.07	1	0.1101	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	3	8	MT-CO3	1036	chrM:9242:+	MT-ATP6	5156	chrM:8898:+	INCL_NON_REF_SPLICE	YES	0	107	1	0.09	0.03	0.0801	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.09	1	0.1101	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-CO1	5	0	MT-CO3	1031	chrM:9237:+	MT-CO1	5296	chrM:6415:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1762],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE180_OESOPHAGUS	1	1	0.0501	FALSE	4	27	0	4	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MCM4--PRKDC	4	3	MCM4	7294	chr8:48880045:+	PRKDC	22114	chr8:48869991:-	ONLY_REF_SPLICE	YES	927	307	0.01	0.02	0.04	0.03	{Klijn_CCL:Head-Neck=1},LOCAL_INVERSION:+:-:[2],MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4,PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide	KYSE180_OESOPHAGUS	0.01	0.02	0.07	FALSE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ATP6--MT-CO1	4	3	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	19834	45080	0	0	0.04	0.03	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE180_OESOPHAGUS	0	0	0.07	FALSE	183	104	9	328	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	4	3	MT-CO3	1020	chrM:9226:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	0	37	1	0.16	0.04	0.03	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.16	1	0.07	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ATP8	3	7	MT-ND4	2089	chrM:11848:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	NO	27334	0	0	1	0.03	0.0701	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE180_OESOPHAGUS	0	1	0.1001	FALSE	231	215	16	283	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	4	3	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	234	0	0.03	1	0.04	0.03	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.03	1	0.07	FALSE	344	827	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	3	7	MT-ND4	1278	chrM:11037:+	MT-ND4L	5663	chrM:10754:+	INCL_NON_REF_SPLICE	YES	201	0	0.05	1	0.03	0.0701	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.05	1	0.1001	FALSE	344	827	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND6--MT-TE	4	3	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	8	0	0.47	1	0.04	0.03	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE180_OESOPHAGUS	0.47	1	0.07	FALSE	499	1288	110	792	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND6--MT-TE	4	3	MT-ND6	1302	chrM:14372:-	MT-TE	4520	chrM:14748:-	INCL_NON_REF_SPLICE	YES	9	0	0.44	1	0.04	0.03	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE180_OESOPHAGUS	0.44	1	0.07	FALSE	499	1288	110	792	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-TW--MT-ND2	4	3	MT-TW	1005	chrM:5516:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	141	1	0.05	0.04	0.03	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KYSE180_OESOPHAGUS	0.05	1	0.07	FALSE	14	0	0	19	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RP11-114H23.1--RP11-114H23.2	4	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.04	0.03	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	KYSE180_OESOPHAGUS	1	1	0.07	FALSE	81	155	12	160	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RPS6KA5--ZBP1	3	7	RPS6KA5	5050	chr14:91444650:-	ZBP1	29356	chr20:56191524:-	ONLY_REF_SPLICE	YES	27	0	0.27	1	0.03	0.0701	{Klijn_CCL:Head-Neck=1},RPS6KA5->chr14:91336799-91526980:-,ribosomal_protein_S6_kinase_A5,ZBP1->Z-DNA_binding_protein_1,chr20:56178902-56195632:-	KYSE180_OESOPHAGUS	0.27	1	0.1001	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-CO1	3	6	MT-CO3	1308	chrM:9514:+	MT-CO1	5427	chrM:6546:+	INCL_NON_REF_SPLICE	NO	31818	45754	0	0	0.03	0.0601	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1762],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE180_OESOPHAGUS	0	0	0.0901	FALSE	4	27	0	4	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	4	2	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	98	0	0.06	1	0.04	0.02	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.06	1	0.06	FALSE	344	826	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RP11-6N13.1--CTD-2374C24.1	2	10	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.02	0.1001	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	KYSE180_OESOPHAGUS	0.8	1	0.1201	TRUE	5	12	0	42	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	3	5	MT-CO3	1039	chrM:9245:+	MT-ATP6	5321	chrM:9063:+	INCL_NON_REF_SPLICE	YES	0	20	1	0.29	0.03	0.0501	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.29	1	0.0801	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND6--MT-TE	4	1	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0.01	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE180_OESOPHAGUS	1	1	0.05	FALSE	499	1288	110	792	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-TA--MT-TC	4	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0.01	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE180_OESOPHAGUS	1	1	0.05	FALSE	462	80	0	856	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	58	0.62	0.08	0.04	0.01	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KYSE180_OESOPHAGUS	0.08	0.62	0.05	FALSE	16	356	14	466	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	C15orf41--RP11-814P5.1	4	0	C15orf41	9789	chr15:36950106:+	RP11-814P5.1	31728	chr15:35069472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.04	0	C15orf41->chr15:36871812-37102449:+,chromosome_15_open_reading_frame_41,RP11-814P5.1->chr15:35047285-35105124:+	KYSE180_OESOPHAGUS	1	1	0.04	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	1	1	0.04	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	3	4	MT-CO3	1533	chrM:9739:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	75	2	0.09	0.78	0.03	0.04	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.09	0.78	0.07	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-CO3--MT-ATP6	3	4	MT-CO3	1083	chrM:9289:+	MT-ATP6	5405	chrM:9147:+	INCL_NON_REF_SPLICE	YES	3	5	0.7	0.58	0.03	0.04	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE180_OESOPHAGUS	0.58	0.7	0.07	FALSE	189	492	56	216	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND3--MT-TG	4	0	MT-ND3	1064	chrM:10122:+	MT-TG	4305	chrM:9949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	KYSE180_OESOPHAGUS	1	1	0.04	FALSE	97	9	0	14	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ATP8	4	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE180_OESOPHAGUS	1	1	0.04	FALSE	230	193	14	283	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ATP8	4	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE180_OESOPHAGUS	1	1	0.04	FALSE	230	198	14	283	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ATP8	4	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE180_OESOPHAGUS	1	1	0.04	FALSE	231	205	14	283	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	SAMD5--SASH1	4	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.04	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	KYSE180_OESOPHAGUS	1	1	0.04	TRUE	53	396	64	110	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-TW--MT-ND2	3	3	MT-TW	1004	chrM:5515:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	141	1	0.04	0.03	0.03	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KYSE180_OESOPHAGUS	0.04	1	0.06	FALSE	14	0	0	19	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-TW--MT-ND2	3	3	MT-TW	1005	chrM:5516:+	MT-ND2	4879	chrM:5280:+	INCL_NON_REF_SPLICE	YES	0	143	1	0.04	0.03	0.03	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KYSE180_OESOPHAGUS	0.04	1	0.06	FALSE	14	0	0	19	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	TNFAIP8--HSD17B4	1	11	TNFAIP8	1216	chr5:118604602:+	HSD17B4	21391	chr5:118807331:+	ONLY_REF_SPLICE	YES	17	114	0.41	0.1	0.01	0.1101	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	KYSE180_OESOPHAGUS	0.1	0.41	0.1201	FALSE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	CTD-3006G17.2--SLC7A7	1	10	CTD-3006G17.2	3490	chr14:28142235:-	SLC7A7	23533	chr14:23248146:-	ONLY_REF_SPLICE	YES	7	6	0.61	0.65	0.01	0.1001	CTD-3006G17.2->chr14:27727923-28314492:-,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	KYSE180_OESOPHAGUS	0.61	0.65	0.1101	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	3	2	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	11	0	0.31	1	0.03	0.02	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.31	1	0.05	FALSE	344	821	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	3	2	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	18	0	0.22	1	0.03	0.02	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.22	1	0.05	FALSE	344	821	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	3	2	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	127	0	0.04	1	0.03	0.02	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	0.04	1	0.05	FALSE	344	827	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	GDAP1--RP11-758M4.1	2	5	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	117	6	0.06	0.54	0.02	0.0501	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	KYSE180_OESOPHAGUS	0.06	0.54	0.0701	TRUE	7	28	0	43	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	GOLIM4--NAALADL2	2	5	GOLIM4	1877	chr3:167812887:-	NAALADL2	32647	chr3:174455431:+	ONLY_REF_SPLICE	YES	111	0	0.06	1	0.02	0.0501	GOLIM4->chr3:167726465-167813763:-,golgi_integral_membrane_protein_4,NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+	KYSE180_OESOPHAGUS	0.06	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	LINC01036--LINC01037	2	5	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0.0501	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	KYSE180_OESOPHAGUS	1	1	0.0701	FALSE	0	24	0	62	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-TA--MT-TC	3	1	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.03	0.01	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE180_OESOPHAGUS	1	1	0.04	FALSE	462	80	0	856	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RP11-385J1.2--KCNMB2	1	9	RP11-385J1.2	1917	chr3:178577277:-	KCNMB2	24210	chr3:178543376:+	ONLY_REF_SPLICE	YES	109	2	0.08	0.83	0.01	0.0901	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	KYSE180_OESOPHAGUS	0.08	0.83	0.1001	TRUE	0	0	0	2	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	RPSAP52--HMGA2	3	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	2	634	0.67	0.01	0.03	0.01	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	KYSE180_OESOPHAGUS	0.01	0.67	0.04	FALSE	0	59	0	125	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ATP6--MT-ND2	3	0	MT-ATP6	1127	chrM:8653:+	MT-ND2	5145	chrM:4933:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.03	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KYSE180_OESOPHAGUS	1	1	0.03	FALSE	177	96	13	17	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ATP6--MT-ND2	3	0	MT-ATP6	1098	chrM:8624:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.03	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KYSE180_OESOPHAGUS	1	1	0.03	FALSE	177	96	13	17	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND3--MT-TG	3	0	MT-ND3	1026	chrM:10084:+	MT-TG	4396	chrM:10040:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.03	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	KYSE180_OESOPHAGUS	1	1	0.03	FALSE	97	9	0	14	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ATP8	3	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.03	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE180_OESOPHAGUS	1	1	0.03	FALSE	230	198	14	283	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.03	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE180_OESOPHAGUS	1	1	0.03	FALSE	344	821	44	306	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.03	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE180_OESOPHAGUS	1	1	0.03	FALSE	499	1288	110	792	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.03	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KYSE180_OESOPHAGUS	1	1	0.03	TRUE	0	0	0	434	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.03	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KYSE180_OESOPHAGUS	1	1	0.03	TRUE	0	0	0	434	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RP11-385J1.2--KCNMB2	1	8	RP11-385J1.2	2989	chr3:178559333:-	KCNMB2	26577	chr3:178560441:+	ONLY_REF_SPLICE	YES	110	6	0.08	0.6	0.01	0.0801	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	KYSE180_OESOPHAGUS	0.08	0.6	0.0901	TRUE	0	1	0	1	1	TRUE	ACH-000693
KYSE180_OESOPHAGUS	NRIP1--AF127936.7	1	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.33	1	0.01	0.0501	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE180_OESOPHAGUS	0.33	1	0.0601	FALSE	164	806	69	479	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0.01	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE180_OESOPHAGUS	1	1	0.03	FALSE	292	1546	117	613	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	POLE4--RP11-355F16.1	2	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	552	0	0.01	1	0.02	0.01	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	KYSE180_OESOPHAGUS	0.01	1	0.03	FALSE	5	7	0	37	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RP11-385J1.2--KCNMB2	1	5	RP11-385J1.2	1917	chr3:178577277:-	KCNMB2	26577	chr3:178560441:+	ONLY_REF_SPLICE	YES	109	6	0.05	0.5	0.01	0.0501	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	KYSE180_OESOPHAGUS	0.05	0.5	0.0601	TRUE	0	2	0	1	2	TRUE	ACH-000693
KYSE180_OESOPHAGUS	SSBP2--DNAJC21	2	1	SSBP2	6646	chr5:80912168:-	DNAJC21	47628	chr5:34954031:+	ONLY_REF_SPLICE	YES	22	359	0.12	0.01	0.02	0.01	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,DNAJC21->DnaJ_heat_shock_protein_family_(Hsp40)_member_C21,chr5:34929698-34959069:+	KYSE180_OESOPHAGUS	0.01	0.12	0.03	FALSE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	C14orf37--PSMA3	2	0	C14orf37	2258	chr14:58758353:-	PSMA3	24456	chr14:58718842:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	KYSE180_OESOPHAGUS	1	1	0.02	FALSE	1	3	0	9	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	CCAT1--PVT1	2	0	CCAT1	1279	chr8:128231055:-	PVT1	28652	chr8:129108764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	1	0	2	1	TRUE	ACH-000693
KYSE180_OESOPHAGUS	CCZ1--ATP2A2	2	0	CCZ1	1195	chr7:5938550:+	ATP2A2	21998	chr12:110729825:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	CCZ1->CCZ1_homolog,_vacuolar_protein_trafficking_and_biogenesis_associated,chr7:5938356-5965605:+,ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	CNIH1--KTN1	2	0	CNIH1	1185	chr14:54907965:-	KTN1	14667	chr14:56078737:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	CNIH1->chr14:54893654-54908149:-,cornichon_family_AMPA_receptor_auxiliary_protein_1,KTN1->Oncogene{Bushman},chr14:56025790-56168244:+,kinectin_1	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	CPSF6--PPP6R2	2	0	CPSF6	11046	chr12:69656342:+	PPP6R2	26977	chr22:50852981:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	CSRP2BP--TOMM34	2	0	CSRP2BP	3099	chr20:18123563:+	TOMM34	22092	chr20:43577518:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	CSRP2BP->Oncogene{Bushman},chr20:18118762-18169031:+,TOMM34->chr20:43570771-43589127:-,translocase_of_outer_mitochondrial_membrane_34	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	DNAJA1--DYNLT1	2	0	DNAJA1	7577	chr9:33037113:+	DYNLT1	16546	chr6:159058926:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	DNAJA1->DnaJ_heat_shock_protein_family_(Hsp40)_member_A1,chr9:33025209-33039905:+,DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	EIF4A2--TANGO6	2	0	EIF4A2	1435	chr3:186501428:+	TANGO6	31052	chr16:69007931:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	FUBP1--SNRNP48	2	0	FUBP1	14090	chr1:78414840:-	SNRNP48	27201	chr6:7601569:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,SNRNP48->chr6:7590432-7612200:+,small_nuclear_ribonucleoprotein_U11/U12_subunit_48	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	GREB1L--RP11-408H20.2	2	0	GREB1L	5424	chr18:18964364:+	RP11-408H20.2	48962	chr18:28742498:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GREB1L->chr18:18822203-19105378:+,growth_regulation_by_estrogen_in_breast_cancer-like,RP11-408H20.2->chr18:28681551-28742752:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	HIBADH--NQO2	2	0	HIBADH	1298	chr7:27702317:-	NQO2	28863	chr6:3019713:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	HIBADH->3-hydroxyisobutyrate_dehydrogenase,chr7:27565061-27702614:-,NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	HIF1A--PRKCH	2	0	HIF1A	1327	chr14:62162557:+	PRKCH	48659	chr14:61952220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	1	15	1	9	1	TRUE	ACH-000693
KYSE180_OESOPHAGUS	KLHL18--CSDE1	2	0	KLHL18	7000	chr3:47371639:+	CSDE1	29804	chr1:115282346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	KLHL18->chr3:47324407-47388306:+,kelch_like_family_member_18,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	145	312	16	51	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	NDUFA4--PHF14	1	4	NDUFA4	1241	chr7:10979643:-	PHF14	24705	chr7:11091239:+	ONLY_REF_SPLICE	YES	1361	259	0	0.02	0.01	0.04	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	KYSE180_OESOPHAGUS	0	0.02	0.05	FALSE	0	2	0	3	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	NDUFA4--PHF14	1	4	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	1361	147	0	0.03	0.01	0.04	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	KYSE180_OESOPHAGUS	0	0.03	0.05	FALSE	19	32	3	60	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	NGDN--PCNX	2	0	NGDN	6312	chr14:23946769:+	PCNX	27244	chr14:71478209:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	NGDN->chr14:23938897-23979071:+,neuroguidin,PCNX->chr14:71374122-71582099:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	NME2--MIR205HG	2	0	NME2	7432	chr17:49245704:+	MIR205HG	13165	chr1:209602526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	NME2->NME/NM23_nucleoside_diphosphate_kinase_2,chr17:49230951-49249105:+,MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	NSD1--EIF4A1	2	0	NSD1	7689	chr5:176631293:+	EIF4A1	47226	chr17:7478437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	NUDT5--RPL30	2	0	NUDT5	1375	chr10:12237769:-	RPL30	21946	chr8:99055003:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	NUDT5->chr10:12207324-12238143:-,nudix_hydrolase_5,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	PCSK6--IGF1R	2	0	PCSK6	3840	chr15:101983761:-	IGF1R	48245	chr15:99439986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	PCSK6->chr15:101840818-102065405:-,proprotein_convertase_subtilisin/kexin_type_6,IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	PPIP5K2--NDUFS8	2	0	PPIP5K2	1340	chr5:102456192:+	NDUFS8	51940	chr11:67800390:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	PPIP5K2->chr5:102455853-102548500:+,diphosphoinositol_pentakisphosphate_kinase_2,NDUFS8->NADH:ubiquinone_oxidoreductase_core_subunit_S8,chr11:67798084-67804111:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	PRRC2A--SNX5	2	0	PRRC2A	2351	chr6:31590678:+	SNX5	23381	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	PRRC2A->chr6:31588497-31605548:+,proline_rich_coiled-coil_2A,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	PTS--ZNF274	2	0	PTS	2563	chr11:112099396:+	ZNF274	16941	chr19:58698314:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	PTS->6-pyruvoyltetrahydropterin_synthase,chr11:112097088-112140678:+,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	RARA--INTS1	2	0	RARA	6149	chr17:38487648:+	INTS1	34936	chr7:1527593:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,INTS1->chr7:1509913-1545489:-,integrator_complex_subunit_1	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	RP11-123O10.4--GRIP1	1	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.01	0.04	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYSE180_OESOPHAGUS	1	1	0.05	FALSE	93	270	15	244	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RPS7--RP11-296I10.6	2	0	RPS7	2426	chr2:3624220:+	RP11-296I10.6	18631	chr16:70263795:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	RPS7->chr2:3622795-3628509:+,ribosomal_protein_S7,RP11-296I10.6->chr16:70253477-70279519:-	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	TAF9--APLP2	2	0	TAF9	1357	chr5:68665484:-	APLP2	18296	chr11:129979324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	TAF9->TATA-box_binding_protein_associated_factor_9,chr5:68646811-68665840:-,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	TDP1--TJP1	2	0	TDP1	18365	chr14:90455434:+	TJP1	35878	chr15:30092905:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	TDP1->chr14:90421283-90511106:+,tyrosyl-DNA_phosphodiesterase_1,TJP1->chr15:29991571-30261068:-,tight_junction_protein_1	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	TSHZ2--NFYB	2	0	TSHZ2	1927	chr20:51589872:+	NFYB	21497	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	TSHZ2->chr20:51588946-52111869:+,teashirt_zinc_finger_homeobox_2,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	TUBB6--NUDT2	2	0	TUBB6	3238	chr18:12311052:+	NUDT2	18068	chr9:34343122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	TUBB6->chr18:12307668-12344319:+,tubulin_beta_6_class_V,NUDT2->chr9:34329504-34343709:+,nudix_hydrolase_2	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	UBA5--RP11-848P1.9	2	0	UBA5	3458	chr3:132379542:+	RP11-848P1.9	28060	chr17:29372428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	UBA5->chr3:132373290-132396941:+,ubiquitin_like_modifier_activating_enzyme_5,RP11-848P1.9->chr17:29335515-29420145:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	UFSP2--VEGFC	2	0	UFSP2	10404	chr4:186324648:-	VEGFC	17990	chr4:177650900:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	UFSP2->UFM1-specific_peptidase_2,chr4:186320694-186347139:-,VEGFC->chr4:177604689-177713881:-,vascular_endothelial_growth_factor_C	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	UGGT2--FRA10AC1	2	0	UGGT2	5306	chr13:96665561:-	FRA10AC1	55520	chr10:95447206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	UGGT2->UDP-glucose_glycoprotein_glucosyltransferase_2,chr13:96453834-96705736:-,FRA10AC1->chr10:95427640-95462329:-,fragile_site,_folic_acid_type,_rare,_fra(10)(q23.3)_or_fra(10)(q24.2)_candidate_1	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	USP13--FXR1	2	0	USP13	11437	chr3:179448497:+	FXR1	38670	chr3:180651122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},USP13->chr3:179370543-179507189:+,ubiquitin_specific_peptidase_13_(isopeptidase_T-3),FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	ZNF786--ATP6V0E2-AS1	2	0	ZNF786	3610	chr7:148777683:-	ATP6V0E2-AS1	14459	chr7:149568885:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	ZNF786->chr7:148766735-148787874:-,zinc_finger_protein_786,ATP6V0E2-AS1->ATP6V0E2_antisense_RNA_1,chr7:149564786-149577699:-	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	ZNFX1--TCP1	2	0	ZNFX1	16406	chr20:47868064:-	TCP1	35969	chr6:160201119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	ZNFX1->chr20:47854483-47894963:-,zinc_finger_NFX1-type_containing_1,TCP1->chr6:160199530-160210781:-,t-complex_1	KYSE180_OESOPHAGUS	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	AC002066.1--AC073130.1	1	3	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	NO	5	0	0.44	1	0.01	0.03	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	KYSE180_OESOPHAGUS	0.44	1	0.04	FALSE	0	3	0	33	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RP11-108K3.1--GLDN	1	3	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.01	0.03	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	KYSE180_OESOPHAGUS	1	1	0.04	FALSE	1	20	0	46	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	TIMM23B--LINC00843	1	3	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.01	0.03	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KYSE180_OESOPHAGUS	0.8	1	0.04	TRUE	62	24	1	171	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	GOLIM4--NAALADL2	1	2	GOLIM4	1877	chr3:167812887:-	NAALADL2	36199	chr3:174814580:+	ONLY_REF_SPLICE	YES	111	2	0.03	0.6	0.01	0.02	GOLIM4->chr3:167726465-167813763:-,golgi_integral_membrane_protein_4,NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+	KYSE180_OESOPHAGUS	0.03	0.6	0.03	TRUE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	PRR16--CTD-2334D19.1	1	2	PRR16	5763	chr5:119952887:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	18	0	0.14	1	0.01	0.02	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	KYSE180_OESOPHAGUS	0.14	1	0.03	FALSE	0	3	0	8	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RP11-353N4.6--SEC22B	1	2	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	NO	122	279	0.02	0.01	0.01	0.02	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	KYSE180_OESOPHAGUS	0.01	0.02	0.03	FALSE	49	42	7	43	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	AC027763.2--RPA1	1	1	AC027763.2	1154	chr17:6915515:-	RPA1	18638	chr17:1756395:+	ONLY_REF_SPLICE	NO	19	876	0.1	0	0.01	0.01	AC027763.2->chr17:6779954-6915668:-,RPA1->chr17:1732996-1803376:+,replication_protein_A1	KYSE180_OESOPHAGUS	0	0.1	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	AC108142.1--DCTD	1	1	AC108142.1	1911	chr4:183065492:-	DCTD	20989	chr4:183836728:-	ONLY_REF_SPLICE	YES	2	85	0.5	0.02	0.01	0.01	AC108142.1->chr4:182795591-183066402:-,DCTD->chr4:183811213-183839089:-,dCMP_deaminase	KYSE180_OESOPHAGUS	0.02	0.5	0.02	TRUE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	C7orf50--UBE2I	1	1	C7orf50	12142	chr7:1040106:-	UBE2I	26452	chr16:1365655:+	ONLY_REF_SPLICE	NO	525	1110	0	0	0.01	0.01	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	KYSE180_OESOPHAGUS	0	0	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	FBRSL1--NOC4L	1	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	59	94	0.03	0.02	0.01	0.01	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	KYSE180_OESOPHAGUS	0.02	0.03	0.02	TRUE	3	48	0	26	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	FUT8--CTNNA1	1	1	FUT8	22918	chr14:66200099:+	CTNNA1	52387	chr5:138221901:+	ONLY_REF_SPLICE	YES	175	63	0.01	0.03	0.01	0.01	{Klijn_CCL:Head-Neck=1},FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	KYSE180_OESOPHAGUS	0.01	0.03	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	GUSBP1--ZFYVE16	1	1	GUSBP1	4568	chr5:21461975:+	ZFYVE16	25233	chr5:79729928:+	ONLY_REF_SPLICE	NO	49	28	0.04	0.07	0.01	0.01	GUSBP1->chr5:21341942-21589481:+,glucuronidase,_beta_pseudogene_1,ZFYVE16->chr5:79703832-79775169:+,zinc_finger_FYVE-type_containing_16	KYSE180_OESOPHAGUS	0.04	0.07	0.02	TRUE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	LRBA--ARFIP1	1	1	LRBA	55567	chr4:151336590:-	ARFIP1	86609	chr4:153831216:+	ONLY_REF_SPLICE	YES	74	125	0.03	0.02	0.01	0.01	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,ARFIP1->ADP_ribosylation_factor_interacting_protein_1,chr4:153701089-153839615:+	KYSE180_OESOPHAGUS	0.02	0.03	0.02	TRUE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MAML2--MTMR2	1	1	MAML2	5424	chr11:95825056:-	MTMR2	23526	chr11:95598840:-	ONLY_REF_SPLICE	YES	15	241	0.12	0.01	0.01	0.01	NEIGHBORS[51283],MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,MTMR2->chr11:95566046-95658479:-,myotubularin_related_protein_2	KYSE180_OESOPHAGUS	0.01	0.12	0.02	FALSE	0	1	0	3	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MCM4--PRKDC	1	1	MCM4	11948	chr8:48885624:+	PRKDC	65187	chr8:48771196:-	ONLY_REF_SPLICE	NO	936	600	0	0	0.01	0.01	{Klijn_CCL:Head-Neck=1},LOCAL_INVERSION:+:-:[2],MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4,PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide	KYSE180_OESOPHAGUS	0	0	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MCM4--PRKDC	1	1	MCM4	4995	chr8:48877272:+	PRKDC	76321	chr8:48746957:-	ONLY_REF_SPLICE	YES	1097	802	0	0	0.01	0.01	{Klijn_CCL:Head-Neck=1},LOCAL_INVERSION:+:-:[2],MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4,PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide	KYSE180_OESOPHAGUS	0	0	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MEIS2--C15orf41	1	1	MEIS2	12226	chr15:37329015:-	C15orf41	52960	chr15:37100525:+	ONLY_REF_SPLICE	NO	150	274	0.01	0.01	0.01	0.01	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:-:+:[78957],MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,C15orf41->chr15:36871812-37102449:+,chromosome_15_open_reading_frame_41	KYSE180_OESOPHAGUS	0.01	0.01	0.02	FALSE	0	1	0	4	1	FALSE	ACH-000693
KYSE180_OESOPHAGUS	MIR205HG--C9orf3	1	1	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	NO	396	497	0.01	0	0.01	0.01	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	KYSE180_OESOPHAGUS	0	0.01	0.02	FALSE	86	303	14	25	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	PDHX--CD44	1	1	PDHX	1987	chr11:34938362:+	CD44	26027	chr11:35218293:+	ONLY_REF_SPLICE	YES	234	1447	0.01	0	0.01	0.01	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	KYSE180_OESOPHAGUS	0	0.01	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	PINX1--RP1L1	1	1	PINX1	6234	chr8:10683662:-	RP1L1	17312	chr8:10480730:-	ONLY_REF_SPLICE	YES	133	0	0.01	1	0.01	0.01	NEIGHBORS[52776],PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	KYSE180_OESOPHAGUS	0.01	1	0.02	FALSE	1	8	0	15	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RASSF5--PDHA1	1	1	RASSF5	4165	chr1:206731021:+	PDHA1	24339	chrX:19375770:+	ONLY_REF_SPLICE	YES	4	518	0.33	0	0.01	0.01	RASSF5->Ras_association_domain_family_member_5,chr1:206680879-206762616:+,PDHA1->chrX:19362011-19379823:+,pyruvate_dehydrogenase_(lipoamide)_alpha_1	KYSE180_OESOPHAGUS	0	0.33	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	RP11-20I20.2--CTBP1	1	1	RP11-20I20.2	1114	chr4:1107540:+	CTBP1	8481	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	21	1	0.09	0.01	0.01	LOCAL_INVERSION:+:-:[78471],RP11-20I20.2->chr4:1107427-1126765:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	KYSE180_OESOPHAGUS	0.09	1	0.02	TRUE	0	1	1	6	1	TRUE	ACH-000693
KYSE180_OESOPHAGUS	RP11-385J1.2--KCNMB2	1	1	RP11-385J1.2	1112	chr3:178578082:-	KCNMB2	20856	chr3:178525131:+	ONLY_REF_SPLICE	NO	5	0	0.29	1	0.01	0.01	RP11-385J1.2->chr3:178244293-178578193:-,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	KYSE180_OESOPHAGUS	0.29	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000693
KYSE180_OESOPHAGUS	SDCBP2-AS1--PSMF1	1	1	SDCBP2-AS1	1125	chr20:1306173:+	PSMF1	19028	chr20:1115764:+	ONLY_REF_SPLICE	YES	1	595	0.67	0	0.01	0.01	SDCBP2-AS1->SDCBP2_antisense_RNA_1,chr20:1306049-1359378:+,PSMF1->chr20:1093906-1160596:+,proteasome_inhibitor_subunit_1	KYSE180_OESOPHAGUS	0	0.67	0.02	FALSE	0	0	0	2	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	TES--CAV1	1	1	TES	7998	chr7:115892530:+	CAV1	16985	chr7:116199000:+	ONLY_REF_SPLICE	NO	359	3844	0.01	0	0.01	0.01	{Klijn_CCL:Lung=1,Head-Neck=1},TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	KYSE180_OESOPHAGUS	0	0.01	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000693
KYSE180_OESOPHAGUS	UBAP1--PTPRS	1	1	UBAP1	1236	chr9:34179238:+	PTPRS	36479	chr19:5222231:-	ONLY_REF_SPLICE	NO	87	67	0.02	0.03	0.01	0.01	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,PTPRS->chr19:5158506-5340814:-,protein_tyrosine_phosphatase,_receptor_type_S	KYSE180_OESOPHAGUS	0.02	0.03	0.02	TRUE	0	0	0	1	0	FALSE	ACH-000693
SNU738_CENTRAL_NERVOUS_SYSTEM	NCOA3--EYA2	466	246	NCOA3	8220	chr20:46256767:+	EYA2	46927	chr20:45808446:+	ONLY_REF_SPLICE	YES	131	0	0.84	1	4.748	2.5065	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.84	1	7.2545	TRUE	0	0	0	2	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DOCK5--CDCA2	436	174	DOCK5	2313	chr8:25101273:+	CDCA2	77394	chr8:25337429:+	ONLY_REF_SPLICE	YES	0	2	1	1	4.4424	1.7729	NEIGHBORS[40915],DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5,CDCA2->cell_division_cycle_associated_2,chr8:25316513-25365436:+	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	6.2153	FALSE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MLLT10--RP11-168O10.6	265	109	MLLT10	1640	chr10:21823733:+	RP11-168O10.6	38031	chr10:91222272:+	ONLY_REF_SPLICE	YES	85	4	0.81	0.99	2.7001	1.1106	MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,RP11-168O10.6->chr10:91215821-91227897:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.81	0.99	3.8107	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	SYMPK--CEACAMP1	244	79	SYMPK	16165	chr19:46333312:-	CEACAMP1	37611	chr19:43124455:-	INCL_NON_REF_SPLICE	YES	163	2	0.66	0.99	2.4861	0.8049	SYMPK->chr19:46318668-46366548:-,symplekin,CEACAMP1->carcinoembryonic_antigen_related_cell_adhesion_molecule_pseudogene_1,chr19:43124364-43137186:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.66	0.99	3.291	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CMIP--RP11-398K22.12	135	82	CMIP	1372	chr16:81479146:+	RP11-398K22.12	44998	chr6:74008780:+	ONLY_REF_SPLICE	YES	68	1	0.76	1	1.3755	0.8355	CMIP->c-Maf_inducing_protein,chr16:81478775-81745367:+,RP11-398K22.12->chr6:73972938-74011124:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.76	1	2.211	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	STK24--TBL1XR1	139	22	STK24	5361	chr13:99171497:-	TBL1XR1	28929	chr3:176816329:-	ONLY_REF_SPLICE	YES	52	10	0.76	0.94	1.4163	0.2242	STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24,TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1	SNU738_CENTRAL_NERVOUS_SYSTEM	0.76	0.94	1.6405	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	AGO2--TRAPPC9	112	0	AGO2	1135	chr8:141645584:-	TRAPPC9	53615	chr8:141034176:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.1412	0	NEIGHBORS[72586],AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	1.1412	FALSE	0	2	0	3	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DENND1A--RALGPS1	76	20	DENND1A	16714	chr9:126319849:-	RALGPS1	53550	chr9:129815126:+	ONLY_REF_SPLICE	YES	51	4	0.65	0.96	0.7744	0.2038	DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,RALGPS1->Ral_GEF_with_PH_domain_and_SH3_binding_motif_1,chr9:129677053-129985445:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.65	0.96	0.9782	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	AP3D1--SLC6A8	80	0	AP3D1	26929	chr19:2101455:-	SLC6A8	38438	chrX:152961595:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8151	0	GTEx&tcga_normals:500/3694=13.54%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9]},GTEx_v2:{count=1021;pct=11.80%;dist=Thyroid=52,Muscle_-_Skeletal=40,Lung=39,Esophagus_-_Mucosa=38,Testis=37,Esophagus_-_Muscularis=36,Cells_-_Transformed_fibroblasts=34,Skin_-_Sun_Exposed_(Lower_leg)=33,Nerve_-_Tibial=30,Artery_-_Tibial=29,Pituitary=28,Adipose_-_Visceral_(Omentum)=27,Spleen=27,Colon_-_Transverse=27,Stomach=26,Adrenal_Gland=26,Pancreas=25,Adipose_-_Subcutaneous=25,Breast_-_Mammary_Tissue=24,Cells_-_EBV-transformed_lymphocytes=24,Heart_-_Atrial_Appendage=24,Brain_-_Cerebellar_Hemisphere=21,Brain_-_Cerebellum=20,Colon_-_Sigmoid=20,Prostate=19,Heart_-_Left_Ventricle=19,Artery_-_Coronary=18,Brain_-_Cortex=18,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Small_Intestine_-_Terminal_Ileum=17,Artery_-_Aorta=17,Brain_-_Frontal_Cortex_(BA9)=17,Esophagus_-_Gastroesophageal_Junction=17,Skin_-_Not_Sun_Exposed_(Suprapubic)=17,Liver=16,Brain_-_Hypothalamus=13,Minor_Salivary_Gland=12,Brain_-_Hippocampus=12,Uterus=11,Ovary=10,Brain_-_Anterior_cingulate_cortex_(BA24)=10,Brain_-_Putamen_(basal_ganglia)=9,Brain_-_Caudate_(basal_ganglia)=9,Vagina=8,Whole_Blood=6,Kidney_-_Cortex=5,Brain_-_Substantia_nigra=4,Brain_-_Spinal_cord_(cervical_c-1)=3,Brain_-_Amygdala=3,=1},AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,SLC6A8->chrX:152953554-152962048:+,solute_carrier_family_6_member_8	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.8151	TRUE	6	6	0	5	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	69	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.703	0.2445	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.9475	TRUE	508	994	45	981	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DIP2A--PCNT	66	17	DIP2A	1324	chr21:47879135:+	PCNT	80365	chr21:47847536:+	ONLY_REF_SPLICE	YES	10	10	0.89	0.89	0.6725	0.1732	GTEx_v2:{count=4;pct=0.05%;dist=Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1},LOCAL_REARRANGEMENT:+:[13130],DIP2A->chr21:47878812-47989926:+,disco_interacting_protein_2_homolog_A,PCNT->chr21:47744036-47865682:+,pericentrin	SNU738_CENTRAL_NERVOUS_SYSTEM	0.89	0.89	0.8457	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PPP5C--ERCC1	65	19	PPP5C	12013	chr19:46891988:+	ERCC1	24045	chr19:45926639:-	ONLY_REF_SPLICE	YES	172	509	0.33	0.14	0.6623	0.1936	PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1	SNU738_CENTRAL_NERVOUS_SYSTEM	0.14	0.33	0.8559	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MLLT10--RP11-168O10.6	30	129	MLLT10	1640	chr10:21823733:+	RP11-168O10.6	36852	chr10:91215827:+	INCL_NON_REF_SPLICE	YES	85	0	0.65	1	0.3057	1.3144	MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,RP11-168O10.6->chr10:91215821-91227897:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.65	1	1.6201	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CTD-2162K18.5--IGFL3	51	31	CTD-2162K18.5	3025	chr19:37292835:+	IGFL3	10752	chr19:46627578:-	ONLY_REF_SPLICE	YES	29	0	0.74	1	0.5196	0.3159	CTD-2162K18.5->chr19:37288420-37319017:+,IGFL3->IGF_like_family_member_3,chr19:46623328-46627931:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.74	1	0.8355	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	HCP5--PEX14	50	1	HCP5	2219	chr6:31431056:+	PEX14	14116	chr1:10596270:+	ONLY_REF_SPLICE	YES	8	2	0.86	0.96	0.5094	0.0102	HCP5->HLA_complex_P5_(non-protein_coding),chr6:31368479-31445283:+,PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14	SNU738_CENTRAL_NERVOUS_SYSTEM	0.86	0.96	0.5196	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	HDAC6--SSX6	44	18	HDAC6	10581	chrX:48674459:+	SSX6	22689	chrX:47969867:+	ONLY_REF_SPLICE	YES	64	0	0.49	1	0.4483	0.1834	HDAC6->Oncogene{Bushman},chrX:48659784-48683392:+,histone_deacetylase_6,SSX6->chrX:47967367-47980068:+,synovial_sarcoma,_X_breakpoint_6_(pseudogene)	SNU738_CENTRAL_NERVOUS_SYSTEM	0.49	1	0.6317	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CLTC--VMP1	42	23	CLTC	1316	chr17:57697534:+	VMP1	53132	chr17:57915656:+	ONLY_REF_SPLICE	YES	192	67	0.25	0.49	0.4279	0.2343	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SNU738_CENTRAL_NERVOUS_SYSTEM	0.25	0.49	0.6622	FALSE	0	6	0	10	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	SMAD4--RP11-267C16.1	42	18	SMAD4	14720	chr18:48581363:+	RP11-267C16.1	43939	chr18:49086963:+	ONLY_REF_SPLICE	YES	53	0	0.53	1	0.4279	0.1834	SMAD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_4,chr18:48494410-48611415:+,RP11-267C16.1->chr18:48872619-49088939:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.53	1	0.6113	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	ZNF148--HEG1	39	26	ZNF148	1253	chr3:125093946:-	HEG1	43291	chr3:124696790:-	ONLY_REF_SPLICE	YES	38	326	0.63	0.17	0.3974	0.2649	ZNF148->chr3:124944405-125094198:-,zinc_finger_protein_148,HEG1->chr3:124684554-124774802:-,heart_development_protein_with_EGF_like_domains_1	SNU738_CENTRAL_NERVOUS_SYSTEM	0.17	0.63	0.6623	TRUE	0	0	0	2	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DOCK5--CDCA2	4	160	DOCK5	2313	chr8:25101273:+	CDCA2	77402	chr8:25337437:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	0.0408	1.6302	NEIGHBORS[40915],DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5,CDCA2->cell_division_cycle_associated_2,chr8:25316513-25365436:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.99	1	1.671	FALSE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CLASRP--VASP	36	23	CLASRP	3806	chr19:45555426:+	VASP	26171	chr19:46027099:+	ONLY_REF_SPLICE	YES	223	351	0.21	0.14	0.3668	0.2343	CLASRP->CLK4_associating_serine/arginine_rich_protein,chr19:45542298-45574214:+,VASP->chr19:46009837-46030241:+,vasodilator-stimulated_phosphoprotein	SNU738_CENTRAL_NERVOUS_SYSTEM	0.14	0.21	0.6011	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	40	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4076	0.0509	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.4585	FALSE	462	80	0	856	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DENND1A--RALGPS1	35	22	DENND1A	16714	chr9:126319849:-	RALGPS1	52460	chr9:129812322:+	ONLY_REF_SPLICE	YES	51	3	0.53	0.95	0.3566	0.2242	DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,RALGPS1->Ral_GEF_with_PH_domain_and_SH3_binding_motif_1,chr9:129677053-129985445:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.53	0.95	0.5808	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CSAD--RP11-793H13.10	37	11	CSAD	8127	chr12:53563856:-	RP11-793H13.10	29739	chr12:53901811:-	INCL_NON_REF_SPLICE	YES	10	0	0.83	1	0.377	0.1121	CSAD->chr12:53551447-53575135:-,cysteine_sulfinic_acid_decarboxylase,RP11-793H13.10->chr12:53900472-54019763:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.4891	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	SYMPK--CEACAMP1	20	79	SYMPK	16167	chr19:46333310:-	CEACAMP1	37611	chr19:43124455:-	INCL_NON_REF_SPLICE	YES	169	2	0.37	0.98	0.2038	0.8049	SYMPK->chr19:46318668-46366548:-,symplekin,CEACAMP1->carcinoembryonic_antigen_related_cell_adhesion_molecule_pseudogene_1,chr19:43124364-43137186:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.37	0.98	1.0087	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	EPB41L4B--IKBKAP	39	2	EPB41L4B	12220	chr9:112013761:-	IKBKAP	61596	chr9:111651673:-	ONLY_REF_SPLICE	YES	21	56	0.66	0.42	0.3974	0.0204	EPB41L4B->chr9:111934255-112083244:-,erythrocyte_membrane_protein_band_4.1_like_4B,IKBKAP->chr9:111629797-111696396:-,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_complex-associated_protein	SNU738_CENTRAL_NERVOUS_SYSTEM	0.42	0.66	0.4178	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PPP5C--ZNF570	31	23	PPP5C	1224	chr19:46850474:+	ZNF570	22357	chr19:37966783:+	ONLY_REF_SPLICE	YES	261	48	0.17	0.53	0.3159	0.2343	PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,ZNF570->chr19:37958487-37976260:+,zinc_finger_protein_570	SNU738_CENTRAL_NERVOUS_SYSTEM	0.17	0.53	0.5502	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	36	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	213	3	0.15	0.93	0.3668	0.0102	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.15	0.93	0.377	TRUE	519	3926	326	965	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	ZNF609--RAB11A	32	5	ZNF609	1097	chr15:64753037:+	RAB11A	32454	chr15:66169670:+	ONLY_REF_SPLICE	YES	2	431	0.95	0.08	0.326	0.0509	ZNF609->chr15:64752941-64978264:+,zinc_finger_protein_609,RAB11A->RAB11A,_member_RAS_oncogene_family,chr15:66018392-66184329:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.08	0.95	0.3769	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	ENAH--PYCR2	28	20	ENAH	7034	chr1:225718256:-	PYCR2	34398	chr1:226111471:-	ONLY_REF_SPLICE	YES	195	235	0.2	0.17	0.2853	0.2038	ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila),PYCR2->chr1:226107578-226111978:-,pyrroline-5-carboxylate_reductase_family_member_2	SNU738_CENTRAL_NERVOUS_SYSTEM	0.17	0.2	0.4891	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DOCK5--CDCA2	9	95	DOCK5	2313	chr8:25101273:+	CDCA2	77466	chr8:25337501:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.97	0.0917	0.9679	NEIGHBORS[40915],DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5,CDCA2->cell_division_cycle_associated_2,chr8:25316513-25365436:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.97	1	1.0596	FALSE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PIK3CA--KCNMB2	28	4	PIK3CA	1490	chr3:178866391:+	KCNMB2	33886	chr3:178525131:+	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.2853	0.0408	PIK3CA->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr3:178865902-178957881:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_alpha,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	SNU738_CENTRAL_NERVOUS_SYSTEM	0.97	1	0.3261	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DOCK5--CDCA2	3	97	DOCK5	2313	chr8:25101273:+	CDCA2	77463	chr8:25337498:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.97	0.0306	0.9883	NEIGHBORS[40915],DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5,CDCA2->cell_division_cycle_associated_2,chr8:25316513-25365436:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.97	1	1.0189	FALSE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	RUSC2--IKBKAP	25	1	RUSC2	1046	chr9:35490169:+	IKBKAP	42328	chr9:111651673:-	ONLY_REF_SPLICE	YES	3	56	0.9	0.32	0.2547	0.0102	RUSC2->RUN_and_SH3_domain_containing_2,chr9:35490124-35561895:+,IKBKAP->chr9:111629797-111696396:-,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_complex-associated_protein	SNU738_CENTRAL_NERVOUS_SYSTEM	0.32	0.9	0.2649	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	OPA3--FKRP	21	16	OPA3	2338	chr19:46087881:-	FKRP	27646	chr19:47279909:+	ONLY_REF_SPLICE	YES	61	0	0.38	1	0.214	0.163	OPA3->chr19:46030685-46105470:-,optic_atrophy_3_(autosomal_recessive,_with_chorea_and_spastic_paraplegia),FKRP->chr19:47249303-47280245:+,fukutin_related_protein	SNU738_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.377	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	22	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2242	0.0713	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.2955	FALSE	416	2512	207	587	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	FBLN2--MT-CO1	22	4	FBLN2	10496	chr3:13655634:+	MT-CO1	26175	chrM:5916:+	INCL_NON_REF_SPLICE	YES	1388	0	0.02	1	0.2242	0.0408	FBLN2->chr3:13573824-13679922:+,fibulin_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU738_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.265	FALSE	0	0	0	7	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	SMAD4--RP11-267C16.1	16	24	SMAD4	16052	chr18:48584826:+	RP11-267C16.1	43939	chr18:49086963:+	ONLY_REF_SPLICE	YES	43	0	0.48	1	0.163	0.2445	SMAD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_4,chr18:48494410-48611415:+,RP11-267C16.1->chr18:48872619-49088939:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.48	1	0.4075	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	21	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.214	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.214	TRUE	0	0	0	518	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	20	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2038	0.0102	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.214	FALSE	499	1288	110	792	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	NCOA3--EYA2	13	28	NCOA3	8220	chr20:46256767:+	EYA2	49066	chr20:45811939:+	ONLY_REF_SPLICE	YES	131	200	0.24	0.17	0.1325	0.2853	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.17	0.24	0.4178	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	17	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	55	71	0.34	0.28	0.1732	0.1121	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU738_CENTRAL_NERVOUS_SYSTEM	0.28	0.34	0.2853	TRUE	267	562	48	632	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PPP5C--ZNF570	10	28	PPP5C	1224	chr19:46850474:+	ZNF570	21273	chr19:37961206:+	ONLY_REF_SPLICE	YES	261	45	0.13	0.46	0.1019	0.2853	PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,ZNF570->chr19:37958487-37976260:+,zinc_finger_protein_570	SNU738_CENTRAL_NERVOUS_SYSTEM	0.13	0.46	0.3872	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	HCP5--PEX14	16	3	HCP5	2448	chr6:31431285:+	PEX14	14116	chr1:10596270:+	ONLY_REF_SPLICE	YES	45	2	0.3	0.9	0.163	0.0306	HCP5->HLA_complex_P5_(non-protein_coding),chr6:31368479-31445283:+,PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14	SNU738_CENTRAL_NERVOUS_SYSTEM	0.3	0.9	0.1936	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	16	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	47	1	0.29	0.163	0.0306	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.29	1	0.1936	TRUE	465	1949	224	605	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	ENAH--PYCR2	12	18	ENAH	7034	chr1:225718256:-	PYCR2	35786	chr1:226110083:-	ONLY_REF_SPLICE	YES	195	209	0.13	0.13	0.1223	0.1834	ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila),PYCR2->chr1:226107578-226111978:-,pyrroline-5-carboxylate_reductase_family_member_2	SNU738_CENTRAL_NERVOUS_SYSTEM	0.13	0.13	0.3057	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DOCK5--CDCA2	9	23	DOCK5	2313	chr8:25101273:+	CDCA2	78606	chr8:25340915:+	ONLY_REF_SPLICE	YES	0	152	1	0.17	0.0917	0.2343	NEIGHBORS[40915],DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5,CDCA2->cell_division_cycle_associated_2,chr8:25316513-25365436:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.17	1	0.326	FALSE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	13	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	33	1	0.37	0.1325	0.0611	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.37	1	0.1936	TRUE	458	1351	185	561	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CTD-2162K18.5--IGFL3	8	19	CTD-2162K18.5	1294	chr19:37288713:+	IGFL3	10752	chr19:46627578:-	ONLY_REF_SPLICE	YES	36	0	0.43	1	0.0815	0.1936	CTD-2162K18.5->chr19:37288420-37319017:+,IGFL3->IGF_like_family_member_3,chr19:46623328-46627931:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.43	1	0.2751	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	SYMPK--CEACAMP1	6	27	SYMPK	14835	chr19:46334642:-	CEACAMP1	37611	chr19:43124455:-	INCL_NON_REF_SPLICE	YES	529	2	0.06	0.94	0.0611	0.2751	SYMPK->chr19:46318668-46366548:-,symplekin,CEACAMP1->carcinoembryonic_antigen_related_cell_adhesion_molecule_pseudogene_1,chr19:43124364-43137186:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.06	0.94	0.3362	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	11	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1121	0.0102	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.1223	FALSE	499	1288	110	792	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CMIP--RP11-398K22.12	8	12	CMIP	1372	chr16:81479146:+	RP11-398K22.12	45194	chr6:74008976:+	INCL_NON_REF_SPLICE	YES	68	29	0.23	0.41	0.0815	0.1223	CMIP->c-Maf_inducing_protein,chr16:81478775-81745367:+,RP11-398K22.12->chr6:73972938-74011124:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.23	0.41	0.2038	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	8	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	53	74	0.24	0.19	0.0815	0.0917	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU738_CENTRAL_NERVOUS_SYSTEM	0.19	0.24	0.1732	TRUE	267	562	48	632	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	ENAH--PYCR2	8	8	ENAH	7034	chr1:225718256:-	PYCR2	36525	chr1:226109344:-	ONLY_REF_SPLICE	YES	195	147	0.08	0.1	0.0815	0.0815	ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila),PYCR2->chr1:226107578-226111978:-,pyrroline-5-carboxylate_reductase_family_member_2	SNU738_CENTRAL_NERVOUS_SYSTEM	0.08	0.1	0.163	TRUE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	HCP5--PEX14	9	4	HCP5	3070	chr6:31431907:+	PEX14	14116	chr1:10596270:+	INCL_NON_REF_SPLICE	YES	28	2	0.32	0.87	0.0917	0.0408	HCP5->HLA_complex_P5_(non-protein_coding),chr6:31368479-31445283:+,PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14	SNU738_CENTRAL_NERVOUS_SYSTEM	0.32	0.87	0.1325	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CEP89--ZNF573	9	0	CEP89	1156	chr19:33462742:-	ZNF573	44769	chr19:38231095:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0917	0	CEP89->centrosomal_protein_89,chr19:33369902-33462897:-,ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0917	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CLASRP--VASP	3	24	CLASRP	3826	chr19:45555446:+	VASP	26062	chr19:46026990:+	INCL_NON_REF_SPLICE	YES	233	370	0.1	0.07	0.0306	0.2445	CLASRP->CLK4_associating_serine/arginine_rich_protein,chr19:45542298-45574214:+,VASP->chr19:46009837-46030241:+,vasodilator-stimulated_phosphoprotein	SNU738_CENTRAL_NERVOUS_SYSTEM	0.07	0.1	0.2751	TRUE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PPP5C--ZNF570	2	28	PPP5C	1224	chr19:46850474:+	ZNF570	20446	chr19:37960379:+	ONLY_REF_SPLICE	YES	261	19	0.1	0.61	0.0204	0.2853	PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,ZNF570->chr19:37958487-37976260:+,zinc_finger_protein_570	SNU738_CENTRAL_NERVOUS_SYSTEM	0.1	0.61	0.3057	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	TMSB10--TMSB4X	9	0	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0917	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0917	TRUE	0	1	0	17	1	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CTD-2162K18.5--IGFL3	1	31	CTD-2162K18.5	4841	chr19:37303508:+	IGFL3	10752	chr19:46627578:-	ONLY_REF_SPLICE	YES	32	0	0.5	1	0.0102	0.3159	CTD-2162K18.5->chr19:37288420-37319017:+,IGFL3->IGF_like_family_member_3,chr19:46623328-46627931:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.3261	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	AP000525.9--LA16c-60G3.6	8	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	12	0	0.43	1	0.0815	0.0102	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.43	1	0.0917	TRUE	0	42	0	133	42	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	8	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1908	0	0	1	0.0815	0.0102	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU738_CENTRAL_NERVOUS_SYSTEM	0	1	0.0917	FALSE	13	9	0	364	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MBNL1--DDX19B	6	7	MBNL1	3666	chr3:151986881:+	DDX19B	33106	chr16:70348805:+	ONLY_REF_SPLICE	YES	58	175	0.18	0.07	0.0611	0.0713	MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.07	0.18	0.1324	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	RP11-6N13.1--CTD-2374C24.1	7	3	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0713	0.0306	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.1019	TRUE	5	4	0	46	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	L3MBTL3--RP11-313P18.2	7	1	L3MBTL3	6441	chr6:130343450:+	RP11-313P18.2	33300	chr15:51987954:-	INCL_NON_REF_SPLICE	YES	6	0	0.57	1	0.0713	0.0102	L3MBTL3->chr6:130334844-130462594:+,l(3)mbt-like_3_(Drosophila),RP11-313P18.2->chr15:51985413-51987962:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.57	1	0.0815	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MBNL1--DDX19B	5	8	MBNL1	3666	chr3:151986881:+	DDX19B	31960	chr16:70346512:+	ONLY_REF_SPLICE	YES	58	225	0.18	0.05	0.0509	0.0815	MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.05	0.18	0.1324	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CLASRP--VASP	3	14	CLASRP	3806	chr19:45555426:+	VASP	26427	chr19:46027355:+	ONLY_REF_SPLICE	YES	223	356	0.07	0.05	0.0306	0.1426	CLASRP->CLK4_associating_serine/arginine_rich_protein,chr19:45542298-45574214:+,VASP->chr19:46009837-46030241:+,vasodilator-stimulated_phosphoprotein	SNU738_CENTRAL_NERVOUS_SYSTEM	0.05	0.07	0.1732	TRUE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	ENAH--PYCR2	4	10	ENAH	7034	chr1:225718256:-	PYCR2	36090	chr1:226109779:-	ONLY_REF_SPLICE	YES	195	218	0.07	0.06	0.0408	0.1019	ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila),PYCR2->chr1:226107578-226111978:-,pyrroline-5-carboxylate_reductase_family_member_2	SNU738_CENTRAL_NERVOUS_SYSTEM	0.06	0.07	0.1427	TRUE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	5	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0.0509	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.1018	FALSE	462	80	0	856	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	VASP--CEACAM22P	6	1	VASP	6127	chr19:46026076:+	CEACAM22P	15666	chr19:45052495:-	ONLY_REF_SPLICE	YES	255	0	0.03	1	0.0611	0.0102	VASP->chr19:46009837-46030241:+,vasodilator-stimulated_phosphoprotein,CEACAM22P->carcinoembryonic_antigen_related_cell_adhesion_molecule_22,_pseudogene,chr19:45041045-45124119:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0713	TRUE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0408	0.0611	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU738_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.1019	FALSE	499	1288	110	792	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	AGO2--TRAPPC9	5	0	AGO2	1135	chr8:141645584:-	TRAPPC9	52560	chr8:141092142:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	NEIGHBORS[72586],AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0509	FALSE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PLXNB2--MT2A	5	0	PLXNB2	4885	chr22:50728393:-	MT2A	23273	chr16:56642513:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	PLXNB2->chr22:50713408-50746056:-,plexin_B2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0509	TRUE	0	0	0	5	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0.0306	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0714	FALSE	499	1288	110	792	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MYH9--MT2A	4	3	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	524	0	0.01	1	0.0408	0.0306	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SNU738_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0714	FALSE	0	0	0	24	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	4	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	100	0.67	0.06	0.0408	0.0204	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU738_CENTRAL_NERVOUS_SYSTEM	0.06	0.67	0.0612	FALSE	16	356	14	466	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DENND1A--RALGPS1	2	9	DENND1A	16714	chr9:126319849:-	RALGPS1	54643	chr9:129831509:+	ONLY_REF_SPLICE	YES	51	8	0.18	0.58	0.0204	0.0917	DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,RALGPS1->Ral_GEF_with_PH_domain_and_SH3_binding_motif_1,chr9:129677053-129985445:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.18	0.58	0.1121	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DOCK5--CDCA2	4	1	DOCK5	2313	chr8:25101273:+	CDCA2	83724	chr8:25360889:+	ONLY_REF_SPLICE	YES	0	201	1	0.02	0.0408	0.0102	NEIGHBORS[40915],DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5,CDCA2->cell_division_cycle_associated_2,chr8:25316513-25365436:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.051	FALSE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	4	0	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0408	TRUE	1	0	0	97	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MT-ND1--MT-TL1	4	0	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0408	FALSE	210	95	5	49	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0408	FALSE	499	1288	110	792	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0408	FALSE	462	80	0	856	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	4	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0408	FALSE	56	216	12	147	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	TMSB10--TMSB4X	4	0	TMSB10	1785	chr2:85133533:+	TMSB4X	6738	chrX:12994917:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0408	TRUE	0	1	0	17	1	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	3	2	PLXDC1	27520	chr17:37222840:-	TAF13	38540	chr1:109605627:-	INCL_NON_REF_SPLICE	YES	0	145	1	0.03	0.0306	0.0204	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.051	TRUE	7	10	0	216	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	1	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0.0102	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0408	FALSE	499	1288	110	792	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	THSD4--CCDC33	3	1	THSD4	8286	chr15:71704162:+	CCDC33	55146	chr15:74622530:+	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0306	0.0102	THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4,CCDC33->chr15:74509613-74628813:+,coiled-coil_domain_containing_33	SNU738_CENTRAL_NERVOUS_SYSTEM	0.19	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	AGK--NDUFB2	3	0	AGK	2361	chr7:141255367:+	NDUFB2	34277	chr7:140402666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	GTEx_FI:{Esophagus=[count:1=pct:0.2],Thyroid=[count:1=pct:0.6]},{Klijn_CCL:Lung=1,Ovary=1},AGK->acylglycerol_kinase,chr7:141250989-141355044:+,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0306	TRUE	1	5	0	3	1	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CTC-459F4.3--ERCC2	3	0	CTC-459F4.3	1188	chr19:28284558:+	ERCC2	20445	chr19:45864900:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	CTC-459F4.3->chr19:28284371-28409771:+,ERCC2->Oncogene{Bushman},chr19:45853095-45874176:-,excision_repair_cross-complementation_group_2	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	EZR--NFYB	3	0	EZR	2248	chr6:159239114:-	NFYB	20332	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	EZR->chr6:159186773-159240444:-,ezrin,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	3	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0306	TRUE	1	0	0	97	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PIK3CA--KCNMB2	2	4	PIK3CA	1490	chr3:178866391:+	KCNMB2	32761	chr3:178512930:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0204	0.0408	PIK3CA->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr3:178865902-178957881:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_alpha,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	SNU738_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.0612	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	TGM2--MT-CO3	3	0	TGM2	18754	chr20:36758472:-	MT-CO3	23423	chrM:9266:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	TGM2->chr20:36756863-36794980:-,transglutaminase_2,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0306	FALSE	0	0	0	2	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PPP1R13L--CTB-179K24.3	2	2	PPP1R13L	10242	chr19:45895138:-	CTB-179K24.3	18980	chr19:45588898:-	ONLY_REF_SPLICE	YES	265	0	0.01	1	0.0204	0.0204	PPP1R13L->Oncogene{Bushman},chr19:45882892-45909607:-,protein_phosphatase_1_regulatory_subunit_13_like,CTB-179K24.3->chr19:45579768-45593649:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0408	FALSE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CADM1--NNMT	2	1	CADM1	1687	chr11:115374989:-	NNMT	39591	chr11:114182767:+	ONLY_REF_SPLICE	YES	751	587	0	0.01	0.0204	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},CADM1->cell_adhesion_molecule_1,chr11:115039938-115375675:-,NNMT->Oncogene{Bushman},chr11:114128509-114184007:+,nicotinamide_N-methyltransferase	SNU738_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0306	FALSE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	LINC00473--PDE10A	2	1	LINC00473	1520	chr6:166401017:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	39	0	0.07	1	0.0204	0.0102	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	SNU738_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.0306	FALSE	6	13	0	15	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	LINC00473--PDE10A	2	1	LINC00473	9097	chr6:166324296:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0204	0.0102	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	SNU738_CENTRAL_NERVOUS_SYSTEM	0.27	1	0.0306	FALSE	2	5	0	11	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	RP11-6N13.1--CTD-2374C24.1	2	1	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0204	0.0102	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0306	TRUE	5	12	0	42	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	ZNF180--AC002115.5	2	1	ZNF180	4945	chr19:44988572:-	AC002115.5	13704	chr19:36091543:+	ONLY_REF_SPLICE	YES	70	0	0.04	1	0.0204	0.0102	ZNF180->chr19:44979854-45004576:-,zinc_finger_protein_180,AC002115.5->chr19:36088809-36092403:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	AGO2--TRAPPC9	2	0	AGO2	1135	chr8:141645584:-	TRAPPC9	55883	chr8:140999044:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NEIGHBORS[72586],AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	C17orf76-AS1--PTTG1	2	0	C17orf76-AS1	1593	chr17:16342728:+	PTTG1	13683	chr5:159849309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	C17orf76-AS1->chr17:16342136-16381992:+,PTTG1->Oncogene{Bushman},chr5:159848829-159855748:+,pituitary_tumor-transforming_1	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CAPZA2--UBB	2	0	CAPZA2	3371	chr7:116502704:+	UBB	26491	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	5	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	CSNK1G1--AP3S2	2	0	CSNK1G1	1256	chr15:64648187:-	AP3S2	36847	chr15:90380954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CSNK1G1->casein_kinase_1_gamma_1,chr15:64457716-64648442:-,AP3S2->adaptor_related_protein_complex_3_sigma_2_subunit,chr15:90373831-90437574:-	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DIP2C--ZMYND11	2	0	DIP2C	1250	chr10:735434:-	ZMYND11	52575	chr10:225934:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[19553],DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	5	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DOT1L--AP3D1	2	0	DOT1L	8576	chr19:2194576:+	AP3D1	62439	chr19:2102267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_v2:{count=6;pct=0.07%;dist=Heart_-_Atrial_Appendage=2,Vagina=1,Brain_-_Hypothalamus=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Testis=1},NEIGHBORS_OVERLAP:+:-:[316],DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	FALSE	1	0	0	3	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	ELL--FKBP8	2	0	ELL	1207	chr19:18632731:-	FKBP8	21177	chr19:18652805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_FI:{Esophagus=[count:1=pct:0.2],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[9624],ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	2	2	0	6	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	LDLR--ZNF627	2	0	LDLR	5037	chr19:11213462:+	ZNF627	35861	chr19:11727510:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,ZNF627->chr19:11670189-11729950:+,zinc_finger_protein_627	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	64	13	3	59	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	FALSE	515	4851	409	746	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	SPATS2--PNPT1	2	0	SPATS2	2004	chr12:49761370:+	PNPT1	43388	chr2:55889161:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2,PNPT1->chr2:55861400-55921045:-,polyribonucleotide_nucleotidyltransferase_1	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	TEAD1--PARVA	2	0	TEAD1	1413	chr11:12696381:+	PARVA	32787	chr11:12495292:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	2	0	5	2	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	TMEM180--RP11-18I14.10	2	0	TMEM180	2166	chr10:104225844:+	RP11-18I14.10	21698	chr10:104220648:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_REARRANGEMENT:+:[286],TMEM180->chr10:104221149-104236802:+,RP11-18I14.10->chr10:104209574-104220863:+	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	USP10--OSER1	2	0	USP10	1134	chr16:84733717:+	OSER1	25784	chr20:42835638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,OSER1->chr20:42825136-42839431:-,oxidative_stress_responsive_serine_rich_1	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	DOCK5--CDCA2	1	2	DOCK5	2313	chr8:25101273:+	CDCA2	82586	chr8:25346068:+	ONLY_REF_SPLICE	YES	0	255	1	0.01	0.0102	0.0204	NEIGHBORS[40915],DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5,CDCA2->cell_division_cycle_associated_2,chr8:25316513-25365436:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0306	FALSE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	3	41	0.5	0.07	0.0102	0.0204	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU738_CENTRAL_NERVOUS_SYSTEM	0.07	0.5	0.0306	FALSE	0	23	1	67	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	AC113189.5--EIF4A1	1	1	AC113189.5	1155	chr17:7487236:-	EIF4A1	7950	chr17:7477864:+	ONLY_REF_SPLICE	YES	4	87	0.33	0.02	0.0102	0.0102	LOCAL_INVERSION:-:+:[2959],AC113189.5->chr17:7485282-7487390:-,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	SNU738_CENTRAL_NERVOUS_SYSTEM	0.02	0.33	0.0204	TRUE	0	0	0	2	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	GAS6--GNAS	1	1	GAS6	4023	chr13:114549500:-	GNAS	36188	chr20:57470667:+	ONLY_REF_SPLICE	YES	896	1659	0	0	0.0102	0.0102	GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNU738_CENTRAL_NERVOUS_SYSTEM	0	0	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	L3MBTL3--RP11-313P18.2	1	1	L3MBTL3	6441	chr6:130343450:+	RP11-313P18.2	34425	chr15:51986134:-	ONLY_REF_SPLICE	YES	6	1	0.25	0.67	0.0102	0.0102	L3MBTL3->chr6:130334844-130462594:+,l(3)mbt-like_3_(Drosophila),RP11-313P18.2->chr15:51985413-51987962:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.25	0.67	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	MACF1--MYBL1	1	1	MACF1	97501	chr1:39910507:+	MYBL1	133661	chr8:67505429:-	ONLY_REF_SPLICE	YES	190	113	0.01	0.02	0.0102	0.0102	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,MYBL1->MYB_proto-oncogene_like_1,Oncogene{Bushman},chr8:67474410-67526482:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	PAWR--RP1-78O14.1	1	1	PAWR	13714	chr12:79990291:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	227	0	0.01	1	0.0102	0.0102	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	SNU738_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0204	FALSE	1	1	0	4	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	RP11-168O22.1--PCDH15	1	1	RP11-168O22.1	2183	chr10:57335410:-	PCDH15	9774	chr10:56926411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0102	0.0102	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	SNU738_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	18	36	1	9	0	FALSE	ACH-000807
SNU738_CENTRAL_NERVOUS_SYSTEM	RPL30--LAPTM4B	1	1	RPL30	2527	chr8:99057171:-	LAPTM4B	17876	chr8:98863625:+	ONLY_REF_SPLICE	NO	2612	382	0	0.01	0.0102	0.0102	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	SNU738_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0204	FALSE	0	1	0	5	0	FALSE	ACH-000807
KMRC20_KIDNEY	RALGPS2--IGKV1OR10-1	101	22	RALGPS2	4551	chr1:178754742:+	IGKV1OR10-1	29925	chr10:42680942:+	ONLY_REF_SPLICE	YES	30	0	0.8	1	1.3879	0.3023	RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+,IGKV1OR10-1->chr10:42680787-42681239:+,immunoglobulin_kappa_variable_1/OR10-1_(pseudogene)	KMRC20_KIDNEY	0.8	1	1.6902	TRUE	0	0	0	1	0	TRUE	ACH-000250
KMRC20_KIDNEY	MT-TA--MT-TN	103	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4154	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC20_KIDNEY	1	1	1.4154	FALSE	369	2501	205	193	0	FALSE	ACH-000250
KMRC20_KIDNEY	TIMM23B--LINC00843	94	35	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.2917	0.481	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMRC20_KIDNEY	0.99	1	1.7727	TRUE	508	994	45	981	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-TA--MT-TC	65	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8932	0.1099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMRC20_KIDNEY	1	1	1.0031	FALSE	462	80	0	856	0	FALSE	ACH-000250
KMRC20_KIDNEY	ZNF654--HMGB2	59	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8107	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KMRC20_KIDNEY	1	1	0.8107	TRUE	0	0	0	518	0	FALSE	ACH-000250
KMRC20_KIDNEY	TIMM23--RP11-464F9.1	52	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	232	6	0.19	0.9	0.7146	0.0412	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KMRC20_KIDNEY	0.19	0.9	0.7558	TRUE	519	3926	326	965	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-ND6--MT-TE	39	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.5359	0.055	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC20_KIDNEY	0.98	1	0.5909	FALSE	499	1288	110	792	0	FALSE	ACH-000250
KMRC20_KIDNEY	RP11-123O10.4--GRIP1	23	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3161	0.055	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KMRC20_KIDNEY	1	1	0.3711	FALSE	416	2512	207	587	0	FALSE	ACH-000250
KMRC20_KIDNEY	PSAP--GAPDH	22	4	PSAP	10123	chr10:73579538:-	GAPDH	20232	chr12:6646882:+	INCL_NON_REF_SPLICE	YES	8153	7144	0	0	0.3023	0.055	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	KMRC20_KIDNEY	0	0	0.3573	TRUE	0	0	0	4	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-TA--MT-TN	17	22	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2336	0.3023	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC20_KIDNEY	1	1	0.5359	FALSE	369	2501	205	193	0	FALSE	ACH-000250
KMRC20_KIDNEY	C15orf57--CBX3	21	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	36	18	0.41	0.58	0.2886	0.055	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMRC20_KIDNEY	0.41	0.58	0.3436	TRUE	267	562	48	632	0	FALSE	ACH-000250
KMRC20_KIDNEY	DNAJC2--FBXL13	20	7	DNAJC2	3582	chr7:102978183:-	FBXL13	35917	chr7:102566821:-	ONLY_REF_SPLICE	YES	117	0	0.19	1	0.2748	0.0962	DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	KMRC20_KIDNEY	0.19	1	0.371	TRUE	0	0	0	1	0	TRUE	ACH-000250
KMRC20_KIDNEY	MT-TA--MT-TN	6	63	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0824	0.8657	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC20_KIDNEY	1	1	0.9481	FALSE	369	2501	205	193	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-TA--MT-TN	10	45	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1374	0.6184	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC20_KIDNEY	1	1	0.7558	FALSE	369	2501	205	193	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-TA--MT-TN	19	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2611	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC20_KIDNEY	1	1	0.2611	FALSE	369	2501	205	193	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-TA--MT-TN	8	38	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1099	0.5222	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC20_KIDNEY	1	1	0.6321	FALSE	369	2501	205	193	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-ND6--MT-TE	14	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.1924	0.1786	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC20_KIDNEY	0.9	1	0.371	FALSE	499	1288	110	792	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-TA--MT-TN	16	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2199	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC20_KIDNEY	1	1	0.2199	FALSE	369	2501	205	193	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-TA--MT-TN	5	39	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0687	0.5359	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC20_KIDNEY	1	1	0.6046	FALSE	369	2501	205	193	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-TA--MT-TN	9	14	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1237	0.1924	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC20_KIDNEY	1	1	0.3161	FALSE	369	2501	205	193	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-TA--MT-TN	3	37	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0.5084	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC20_KIDNEY	1	1	0.5496	FALSE	369	2501	205	193	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-ND6--MT-TE	11	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1512	0.055	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC20_KIDNEY	0.94	1	0.2062	FALSE	499	1288	110	792	0	FALSE	ACH-000250
KMRC20_KIDNEY	NRIP1--AF127936.7	12	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1649	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMRC20_KIDNEY	1	1	0.1649	FALSE	292	1546	117	613	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-CO3--MT-ATP6	3	29	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	4	0	0.89	1	0.0412	0.3985	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMRC20_KIDNEY	0.89	1	0.4397	FALSE	189	492	56	216	0	FALSE	ACH-000250
KMRC20_KIDNEY	SAMD5--SASH1	9	3	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	3	14	0.8	0.46	0.1237	0.0412	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	KMRC20_KIDNEY	0.46	0.8	0.1649	TRUE	53	396	64	110	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-CO3--MT-ATP6	3	26	MT-CO3	1223	chrM:9429:+	MT-ATP6	5197	chrM:8939:+	INCL_NON_REF_SPLICE	YES	5	54	0.85	0.35	0.0412	0.3573	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMRC20_KIDNEY	0.35	0.85	0.3985	FALSE	189	492	56	216	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-CO3--MT-ATP6	3	26	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	4	2	0.88	0.94	0.0412	0.3573	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMRC20_KIDNEY	0.88	0.94	0.3985	FALSE	189	492	56	216	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-CO3--MT-ATP6	3	25	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	1	42	0.97	0.4	0.0412	0.3435	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMRC20_KIDNEY	0.4	0.97	0.3847	FALSE	189	492	56	216	0	FALSE	ACH-000250
KMRC20_KIDNEY	C15orf57--CBX3	8	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	34	18	0.24	0.38	0.1099	0.0412	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMRC20_KIDNEY	0.24	0.38	0.1511	TRUE	267	562	48	632	0	FALSE	ACH-000250
KMRC20_KIDNEY	RP4-565E6.1--HYDIN	7	5	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0962	0.0687	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	KMRC20_KIDNEY	1	1	0.1649	TRUE	456	1387	91	133	0	FALSE	ACH-000250
KMRC20_KIDNEY	SLC1A5--MT-ND4L	8	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	548	0	0.02	1	0.1099	0.0137	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMRC20_KIDNEY	0.02	1	0.1236	FALSE	0	0	0	189	0	FALSE	ACH-000250
KMRC20_KIDNEY	NPM1P24--SET	8	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1099	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KMRC20_KIDNEY	1	1	0.1099	TRUE	0	0	0	434	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-TA--MT-TC	6	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0824	0.0962	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMRC20_KIDNEY	1	1	0.1786	FALSE	462	80	0	856	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-ND1--MT-RNR2	6	6	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	23	0	0.34	1	0.0824	0.0824	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC20_KIDNEY	0.34	1	0.1648	FALSE	114	26	4	85	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-TA--MT-TN	7	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0962	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC20_KIDNEY	1	1	0.0962	FALSE	369	2501	205	193	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-CO3--MT-ATP6	3	13	MT-CO3	1032	chrM:9238:+	MT-ATP6	5217	chrM:8959:+	INCL_NON_REF_SPLICE	YES	0	35	1	0.31	0.0412	0.1786	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMRC20_KIDNEY	0.31	1	0.2198	FALSE	189	492	56	216	0	FALSE	ACH-000250
KMRC20_KIDNEY	AC068580.6--MT-ND1	6	0	AC068580.6	2075	chr11:1782652:+	MT-ND1	6155	chrM:3322:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0824	0	AC068580.6->chr11:1781578-1783716:+,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	KMRC20_KIDNEY	1	1	0.0824	FALSE	0	0	0	3	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-TA--MT-TN	6	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0824	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC20_KIDNEY	1	1	0.0824	FALSE	369	2501	205	193	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-CO3--MT-ATP6	4	6	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0.0824	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMRC20_KIDNEY	1	1	0.1374	FALSE	189	492	56	216	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-ATP6--MT-CO1	5	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9408	23286	0	0	0.0687	0.0137	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC20_KIDNEY	0	0	0.0824	FALSE	183	104	9	328	0	FALSE	ACH-000250
KMRC20_KIDNEY	NRIP1--AF127936.7	5	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.4	1	0.0687	0.0137	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMRC20_KIDNEY	0.4	1	0.0824	FALSE	125	705	46	456	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-CO3--MT-ATP6	5	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0687	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMRC20_KIDNEY	1	1	0.0687	FALSE	189	492	56	216	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-ND6--MT-TE	3	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0412	0.1099	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC20_KIDNEY	0.92	1	0.1511	FALSE	499	1288	110	792	0	FALSE	ACH-000250
KMRC20_KIDNEY	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0687	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KMRC20_KIDNEY	1	1	0.0687	TRUE	0	0	0	434	0	FALSE	ACH-000250
KMRC20_KIDNEY	PSAP--GAPDH	4	4	PSAP	8558	chr10:73581643:-	GAPDH	20214	chr12:6646864:+	INCL_NON_REF_SPLICE	YES	6835	7624	0	0	0.055	0.055	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	KMRC20_KIDNEY	0	0	0.11	TRUE	0	0	0	8	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-ATP6--MT-CO1	4	2	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3050	23495	0	0	0.055	0.0275	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC20_KIDNEY	0	0	0.0825	FALSE	183	104	9	328	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	9418	20409	0	0	0.055	0.0137	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC20_KIDNEY	0	0	0.0687	FALSE	183	104	9	328	0	FALSE	ACH-000250
KMRC20_KIDNEY	SLC1A5--MT-ND4L	4	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	554	0	0.01	1	0.055	0.0137	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMRC20_KIDNEY	0.01	1	0.0687	FALSE	0	0	0	189	0	FALSE	ACH-000250
KMRC20_KIDNEY	DTX2P1--CCDC146	4	0	DTX2P1	19696	chr7:76673095:+	CCDC146	23993	chr7:76796975:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	NEIGHBORS[78659],DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	KMRC20_KIDNEY	1	1	0.055	FALSE	1	0	0	1	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMRC20_KIDNEY	1	1	0.055	FALSE	189	492	56	216	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMRC20_KIDNEY	1	1	0.055	FALSE	189	492	56	216	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMRC20_KIDNEY	1	1	0.055	FALSE	462	80	0	856	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1063	chrM:8589:+	MT-CO1	5236	chrM:6458:+	INCL_NON_REF_SPLICE	YES	5710	20323	0	0	0.0412	0.0137	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC20_KIDNEY	0	0	0.0549	FALSE	183	104	9	328	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-ND1--MT-RNR2	3	1	MT-ND1	1264	chrM:3570:+	MT-RNR2	5687	chrM:2401:+	INCL_NON_REF_SPLICE	YES	20	10009	0.17	0	0.0412	0.0137	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC20_KIDNEY	0	0.17	0.0549	FALSE	120	26	5	87	0	FALSE	ACH-000250
KMRC20_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC20_KIDNEY	1	1	0.0412	FALSE	499	1288	110	792	0	FALSE	ACH-000250
KMRC20_KIDNEY	RP11-123O10.4--GRIP1	2	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0.055	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KMRC20_KIDNEY	1	1	0.0825	FALSE	9	21	5	22	0	FALSE	ACH-000250
KMRC20_KIDNEY	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.0275	0.0275	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMRC20_KIDNEY	0.2	1	0.055	FALSE	164	806	69	479	0	FALSE	ACH-000250
KMRC20_KIDNEY	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0.0137	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KMRC20_KIDNEY	1	1	0.0412	FALSE	93	270	15	244	0	FALSE	ACH-000250
KMRC20_KIDNEY	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0.0137	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMRC20_KIDNEY	1	1	0.0412	FALSE	515	4851	409	746	0	FALSE	ACH-000250
KMRC20_KIDNEY	DTX2P1--CCDC146	2	0	DTX2P1	15122	chr7:76648314:+	CCDC146	23993	chr7:76796975:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	NEIGHBORS[78659],DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	KMRC20_KIDNEY	1	1	0.0275	FALSE	3	0	0	1	0	FALSE	ACH-000250
KMRC20_KIDNEY	DTX2P1--CCDC146	2	0	DTX2P1	14033	chr7:76645172:+	CCDC146	23993	chr7:76796975:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	NEIGHBORS[78659],DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	KMRC20_KIDNEY	1	1	0.0275	FALSE	1	0	0	1	0	FALSE	ACH-000250
KMRC20_KIDNEY	ECI1--ZNF598	2	0	ECI1	3113	chr16:2296860:-	ZNF598	12303	chr16:2053729:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	ECI1->chr16:2289396-2302301:-,enoyl-CoA_delta_isomerase_1,ZNF598->chr16:2047655-2059824:-,zinc_finger_protein_598	KMRC20_KIDNEY	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000250
KMRC20_KIDNEY	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMRC20_KIDNEY	1	1	0.0275	FALSE	7	44	2	41	0	FALSE	ACH-000250
KMRC20_KIDNEY	RP11-499O7.7--AKR1C1	2	0	RP11-499O7.7	1180	chr10:5037859:+	AKR1C1	18551	chr10:5014393:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[12205],RP11-499O7.7->chr10:5037680-5039572:+,AKR1C1->aldo-keto_reductase_family_1,_member_C1,chr10:4934796-5025475:+	KMRC20_KIDNEY	1	1	0.0275	TRUE	0	2	0	1	0	TRUE	ACH-000250
KMRC20_KIDNEY	SNAPC1--PRKCH	2	0	SNAPC1	7963	chr14:62249115:+	PRKCH	17944	chr14:61766429:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	SNAPC1->chr14:62229075-62263146:+,small_nuclear_RNA_activating_complex_polypeptide_1,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	KMRC20_KIDNEY	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000250
KMRC20_KIDNEY	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0137	0.0412	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMRC20_KIDNEY	1	1	0.0549	FALSE	192	492	57	212	0	FALSE	ACH-000250
KMRC20_KIDNEY	NFE4--PMPCB	1	2	NFE4	1250	chr7:102614218:+	PMPCB	11670	chr7:102944858:+	ONLY_REF_SPLICE	YES	0	198	1	0.01	0.0137	0.0275	NFE4->chr7:102613969-102629303:+,nuclear_factor,_erythroid_4,PMPCB->chr7:102937869-102969958:+,peptidase,_mitochondrial_processing_beta_subunit	KMRC20_KIDNEY	0.01	1	0.0412	FALSE	0	0	0	1	0	FALSE	ACH-000250
KMRC20_KIDNEY	LINC01004--KMT2E	1	1	LINC01004	1113	chr7:104653379:-	KMT2E	11633	chr7:104681286:+	ONLY_REF_SPLICE	NO	1	63	0.67	0.03	0.0137	0.0137	LOCAL_INVERSION:-:+:[1135],LINC01004->chr7:104590762-104653491:-,long_intergenic_non-protein_coding_RNA_1004,KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E	KMRC20_KIDNEY	0.03	0.67	0.0274	TRUE	0	1	0	1	1	FALSE	ACH-000250
KMRC20_KIDNEY	PILRB--GATS	1	1	PILRB	6287	chr7:99949033:+	GATS	25912	chr7:99810756:-	ONLY_REF_SPLICE	YES	45	46	0.04	0.04	0.0137	0.0137	GTEx&tcga_normals:22/3694=0.60%,GTEx_FI:{Muscle=[count:2=pct:0.9],Brain=[count:1=pct:0.2]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellum=1},LOCAL_INVERSION:+:-,chr7:[63900],PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta,GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-	KMRC20_KIDNEY	0.04	0.04	0.0274	TRUE	0	1	0	1	0	FALSE	ACH-000250
KMRC20_KIDNEY	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	17	1	0.11	0.0137	0.0137	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KMRC20_KIDNEY	0.11	1	0.0274	FALSE	16	356	14	466	0	FALSE	ACH-000250
KMRC20_KIDNEY	SKA3--XPO4	1	1	SKA3	1228	chr13:21750514:-	XPO4	17781	chr13:21429904:-	ONLY_REF_SPLICE	YES	64	7	0.03	0.22	0.0137	0.0137	SKA3->chr13:21727734-21750741:-,spindle_and_kinetochore_associated_complex_subunit_3,XPO4->chr13:21351469-21477187:-,exportin_4	KMRC20_KIDNEY	0.03	0.22	0.0274	TRUE	0	0	0	1	0	FALSE	ACH-000250
EPLC272H_LUNG	TIMM23B--LINC00843	115	37	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9151	0.2944	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EPLC272H_LUNG	0.99	1	1.2095	TRUE	508	994	45	981	0	FALSE	ACH-000585
EPLC272H_LUNG	TLK2--CBX2	98	3	TLK2	31754	chr17:60683602:+	CBX2	41629	chr17:77753161:+	ONLY_REF_SPLICE	YES	47	12	0.68	0.89	0.7798	0.0239	TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2,CBX2->chr17:77751931-77761782:+,chromobox_2	EPLC272H_LUNG	0.68	0.89	0.8037	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	ME1--SNAP91	79	22	ME1	5724	chr6:84055892:-	SNAP91	54275	chr6:84264004:-	ONLY_REF_SPLICE	YES	29	0	0.78	1	0.6286	0.1751	ME1->chr6:83920108-84140797:-,malic_enzyme_1,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	EPLC272H_LUNG	0.78	1	0.8037	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	SLFN11--NUFIP2	74	8	SLFN11	1228	chr17:33700493:-	NUFIP2	18240	chr17:27594548:-	ONLY_REF_SPLICE	YES	41	92	0.67	0.47	0.5889	0.0637	SLFN11->chr17:33677324-33700720:-,schlafen_family_member_11,NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2	EPLC272H_LUNG	0.47	0.67	0.6526	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	TIMM23--RP11-464F9.1	72	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	358	5	0.18	0.94	0.5729	0.0477	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EPLC272H_LUNG	0.18	0.94	0.6206	TRUE	519	3926	326	965	0	FALSE	ACH-000585
EPLC272H_LUNG	MT-TA--MT-TC	51	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4058	0.0716	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EPLC272H_LUNG	1	1	0.4774	FALSE	462	80	0	856	0	FALSE	ACH-000585
EPLC272H_LUNG	MT-TA--MT-TN	43	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3422	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EPLC272H_LUNG	1	1	0.3422	FALSE	369	2501	205	193	0	FALSE	ACH-000585
EPLC272H_LUNG	TNRC18--ACTB	34	10	TNRC18	10018	chr7:5427303:-	ACTB	45979	chr7:5569294:-	ONLY_REF_SPLICE	YES	67	156	0.4	0.22	0.2706	0.0796	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Colon_-_Sigmoid=1},TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	EPLC272H_LUNG	0.22	0.4	0.3502	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	C17orf85--PPM1E	26	9	C17orf85	14103	chr17:3717616:-	PPM1E	21811	chr17:57033010:+	ONLY_REF_SPLICE	YES	73	1	0.32	0.97	0.2069	0.0716	{Klijn_CCL:Lung=1},C17orf85->chr17:3714460-3749545:-,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	EPLC272H_LUNG	0.32	0.97	0.2785	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	ZNF654--HMGB2	26	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2069	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	EPLC272H_LUNG	1	1	0.2069	TRUE	0	0	0	518	0	FALSE	ACH-000585
EPLC272H_LUNG	MSI2--FOXK2	23	11	MSI2	17645	chr17:55478832:+	FOXK2	58781	chr17:80543780:+	ONLY_REF_SPLICE	YES	21	109	0.62	0.24	0.183	0.0875	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	EPLC272H_LUNG	0.24	0.62	0.2705	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	MT-ND6--MT-TE	21	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.1671	0.0477	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EPLC272H_LUNG	0.9	1	0.2148	FALSE	499	1288	110	792	0	FALSE	ACH-000585
EPLC272H_LUNG	C15orf57--CBX3	20	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	81	49	0.26	0.37	0.1591	0.0716	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EPLC272H_LUNG	0.26	0.37	0.2307	TRUE	267	562	48	632	0	FALSE	ACH-000585
EPLC272H_LUNG	MT-ND6--MT-TE	19	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1512	0.0398	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EPLC272H_LUNG	0.96	1	0.191	FALSE	499	1288	110	792	0	FALSE	ACH-000585
EPLC272H_LUNG	TANC2--MGAT5B	18	8	TANC2	22474	chr17:61432751:+	MGAT5B	66070	chr17:74934070:+	ONLY_REF_SPLICE	YES	29	16	0.47	0.62	0.1432	0.0637	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,MGAT5B->chr17:74864538-74946475:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,_isozyme_B	EPLC272H_LUNG	0.47	0.62	0.2069	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	MT-ND6--MT-TE	16	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1273	0.1034	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EPLC272H_LUNG	0.97	1	0.2307	FALSE	499	1288	110	792	0	FALSE	ACH-000585
EPLC272H_LUNG	MT-ND6--MT-TE	14	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1114	0.0398	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EPLC272H_LUNG	0.95	1	0.1512	FALSE	499	1288	110	792	0	FALSE	ACH-000585
EPLC272H_LUNG	CUX1--C1orf168	14	4	CUX1	6304	chr7:101559505:+	C1orf168	77107	chr1:57192256:-	ONLY_REF_SPLICE	YES	295	0	0.06	1	0.1114	0.0318	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,C1orf168->chr1:57184477-57285369:-,chromosome_1_open_reading_frame_168	EPLC272H_LUNG	0.06	1	0.1432	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	MT-TA--MT-TN	9	19	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0716	0.1512	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EPLC272H_LUNG	1	1	0.2228	FALSE	369	2501	205	193	0	FALSE	ACH-000585
EPLC272H_LUNG	CDH13--RP11-22H5.2	13	0	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1034	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	EPLC272H_LUNG	1	1	0.1034	FALSE	14	31	0	36	0	FALSE	ACH-000585
EPLC272H_LUNG	PITPNC1--SGSH	12	2	PITPNC1	1744	chr17:65374318:+	SGSH	25027	chr17:78190991:-	ONLY_REF_SPLICE	YES	2	16	0.88	0.47	0.0955	0.0159	PITPNC1->chr17:65373575-65693372:+,phosphatidylinositol_transfer_protein,_cytoplasmic_1,SGSH->N-sulfoglucosamine_sulfohydrolase,chr17:78180515-78194722:-	EPLC272H_LUNG	0.47	0.88	0.1114	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	ERC1--SYCP2	10	8	ERC1	9215	chr12:1213990:+	SYCP2	55798	chr20:58486900:-	ONLY_REF_SPLICE	YES	22	0	0.45	1	0.0796	0.0637	{Klijn_CCL:Lung=1},ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,SYCP2->chr20:58438618-58508710:-,synaptonemal_complex_protein_2	EPLC272H_LUNG	0.45	1	0.1433	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	ERC1--SYCP2	7	10	ERC1	9215	chr12:1213990:+	SYCP2	55225	chr20:58487473:-	ONLY_REF_SPLICE	YES	22	0	0.44	1	0.0557	0.0796	{Klijn_CCL:Lung=1},ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,SYCP2->chr20:58438618-58508710:-,synaptonemal_complex_protein_2	EPLC272H_LUNG	0.44	1	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	MT-TA--MT-TN	9	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0716	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EPLC272H_LUNG	1	1	0.0716	FALSE	369	2501	205	193	0	FALSE	ACH-000585
EPLC272H_LUNG	C15orf57--CBX3	7	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	79	49	0.13	0.2	0.0557	0.0398	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EPLC272H_LUNG	0.13	0.2	0.0955	TRUE	267	562	48	632	0	FALSE	ACH-000585
EPLC272H_LUNG	NRIP1--AF127936.7	8	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0637	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	EPLC272H_LUNG	1	1	0.0637	FALSE	292	1546	117	613	0	FALSE	ACH-000585
EPLC272H_LUNG	CALM3--MT-ND4L	6	6	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	716	0	0.02	1	0.0477	0.0477	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EPLC272H_LUNG	0.02	1	0.0954	FALSE	1	1	0	107	0	FALSE	ACH-000585
EPLC272H_LUNG	MT-ND6--MT-TE	5	10	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0398	0.0796	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EPLC272H_LUNG	0.94	1	0.1194	FALSE	499	1288	110	792	0	FALSE	ACH-000585
EPLC272H_LUNG	MT-TA--MT-TN	3	17	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0239	0.1353	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EPLC272H_LUNG	1	1	0.1592	FALSE	369	2501	205	193	0	FALSE	ACH-000585
EPLC272H_LUNG	RP11-96H19.1--RP11-446N19.1	7	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0557	0.008	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EPLC272H_LUNG	0.8	1	0.0637	FALSE	515	4851	409	746	0	FALSE	ACH-000585
EPLC272H_LUNG	MYH9--MT2A	6	4	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	1026	2	0.01	0.83	0.0477	0.0318	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	EPLC272H_LUNG	0.01	0.83	0.0795	FALSE	0	0	0	24	0	FALSE	ACH-000585
EPLC272H_LUNG	RP11-123O10.4--GRIP1	6	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0477	0.0239	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	EPLC272H_LUNG	1	1	0.0716	FALSE	416	2512	207	587	0	FALSE	ACH-000585
EPLC272H_LUNG	EEF2--MT2A	4	10	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	2366	2	0.01	0.88	0.0318	0.0796	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	EPLC272H_LUNG	0.01	0.88	0.1114	TRUE	1	0	0	19	0	FALSE	ACH-000585
EPLC272H_LUNG	C17orf85--PPM1E	5	5	C17orf85	12941	chr17:3719410:-	PPM1E	21811	chr17:57033010:+	ONLY_REF_SPLICE	YES	88	1	0.1	0.91	0.0398	0.0398	{Klijn_CCL:Lung=1},C17orf85->chr17:3714460-3749545:-,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	EPLC272H_LUNG	0.1	0.91	0.0796	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	MT-ND6--MT-TE	3	13	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.84	1	0.0239	0.1034	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EPLC272H_LUNG	0.84	1	0.1273	FALSE	499	1288	110	792	0	FALSE	ACH-000585
EPLC272H_LUNG	NRIP1--AF127936.7	5	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	1	0.33	0.91	0.0398	0.0398	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	EPLC272H_LUNG	0.33	0.91	0.0796	FALSE	164	806	69	479	0	FALSE	ACH-000585
EPLC272H_LUNG	ZNF107--CHMP1A	5	1	ZNF107	7065	chr7:64152338:+	CHMP1A	20546	chr16:89713739:-	ONLY_REF_SPLICE	YES	9	233	0.4	0.03	0.0398	0.008	GTEx_v2:{count=3;pct=0.03%;dist=Pancreas=1,Thyroid=1,Esophagus_-_Mucosa=1},ZNF107->chr7:64126511-64171404:+,zinc_finger_protein_107,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	EPLC272H_LUNG	0.03	0.4	0.0478	TRUE	1	2	0	1	0	FALSE	ACH-000585
EPLC272H_LUNG	MT-TA--MT-TC	3	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0239	0.0637	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EPLC272H_LUNG	1	1	0.0876	FALSE	462	80	0	856	0	FALSE	ACH-000585
EPLC272H_LUNG	CTC1--VAT1	4	2	CTC1	2205	chr17:8146303:-	VAT1	22470	chr17:41169947:-	ONLY_REF_SPLICE	YES	12	67	0.33	0.08	0.0318	0.0159	CTC1->CTS_telomere_maintenance_complex_component_1,chr17:8130191-8151362:-,VAT1->chr17:41166622-41177140:-,vesicle_amine_transport_1	EPLC272H_LUNG	0.08	0.33	0.0477	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	MT-TA--MT-TN	4	2	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0.0159	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EPLC272H_LUNG	1	1	0.0477	FALSE	369	2501	205	193	0	FALSE	ACH-000585
EPLC272H_LUNG	TMEM182--VWA3B	4	1	TMEM182	8564	chr2:103414459:+	VWA3B	49217	chr2:98887145:+	ONLY_REF_SPLICE	YES	28	1	0.15	0.83	0.0318	0.008	TMEM182->chr2:103353367-103460352:+,transmembrane_protein_182,VWA3B->chr2:98703579-98929762:+,von_Willebrand_factor_A_domain_containing_3B	EPLC272H_LUNG	0.15	0.83	0.0398	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EPLC272H_LUNG	1	1	0.0318	FALSE	369	2501	205	193	0	FALSE	ACH-000585
EPLC272H_LUNG	TNRC18--ACTB	2	7	TNRC18	10018	chr7:5427303:-	ACTB	46242	chr7:5569031:-	ONLY_REF_SPLICE	YES	67	8876	0.12	0	0.0159	0.0557	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Colon_-_Sigmoid=1},TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	EPLC272H_LUNG	0	0.12	0.0716	FALSE	0	0	0	1	0	FALSE	ACH-000585
EPLC272H_LUNG	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0.0159	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EPLC272H_LUNG	1	1	0.0398	FALSE	467	2173	244	435	0	FALSE	ACH-000585
EPLC272H_LUNG	TANC2--MGAT5B	3	2	TANC2	20866	chr17:61428777:+	MGAT5B	66070	chr17:74934070:+	ONLY_REF_SPLICE	YES	22	16	0.19	0.24	0.0239	0.0159	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,MGAT5B->chr17:74864538-74946475:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,_isozyme_B	EPLC272H_LUNG	0.19	0.24	0.0398	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	ARHGAP44--RP1-56K13.5	3	1	ARHGAP44	1353	chr17:12693208:+	RP1-56K13.5	35284	chr17:37159972:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0239	0.008	ARHGAP44->Rho_GTPase_activating_protein_44,chr17:12692856-12894960:+,RP1-56K13.5->chr17:37159501-37169285:-	EPLC272H_LUNG	0.5	1	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	C17orf85--PPM1E	3	1	C17orf85	11786	chr17:3721557:-	PPM1E	21811	chr17:57033010:+	ONLY_REF_SPLICE	YES	97	1	0.04	0.8	0.0239	0.008	{Klijn_CCL:Lung=1},C17orf85->chr17:3714460-3749545:-,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	EPLC272H_LUNG	0.04	0.8	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	NMT1--LINC00511	3	1	NMT1	6064	chr17:43164020:+	LINC00511	24000	chr17:70614703:-	ONLY_REF_SPLICE	YES	236	0	0.02	1	0.0239	0.008	NMT1->N-myristoyltransferase_1,Oncogene{Bushman},chr17:43128978-43186384:+,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	EPLC272H_LUNG	0.02	1	0.0319	TRUE	0	0	0	1	0	FALSE	ACH-000585
EPLC272H_LUNG	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.67	0.0239	0.008	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	EPLC272H_LUNG	0.67	1	0.0319	TRUE	458	1351	185	561	0	FALSE	ACH-000585
EPLC272H_LUNG	C12orf56--TENM4	3	0	C12orf56	8843	chr12:64687061:-	TENM4	66415	chr11:78387432:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	C12orf56->chr12:64660217-64784972:-,chromosome_12_open_reading_frame_56,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	EPLC272H_LUNG	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	EPLC272H_LUNG	1	1	0.0239	TRUE	22	156	2	142	0	FALSE	ACH-000585
EPLC272H_LUNG	RPSAP52--HMGA2	3	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	EPLC272H_LUNG	1	1	0.0239	FALSE	0	59	0	125	0	FALSE	ACH-000585
EPLC272H_LUNG	TGIF2--IFT52	3	0	TGIF2	3587	chr20:35207369:+	IFT52	20536	chr20:42252531:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	TGIF2->TGFB_induced_factor_homeobox_2,chr20:35201891-35222353:+,IFT52->chr20:42219571-42275936:+,intraflagellar_transport_52	EPLC272H_LUNG	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	METTL13--DNM3	2	1	METTL13	12843	chr1:171783163:+	DNM3	32143	chr1:172100315:+	ONLY_REF_SPLICE	YES	0	4	1	0.43	0.0159	0.008	NEIGHBORS[27458],METTL13->chr1:171750788-171783163:+,methyltransferase_like_13,DNM3->chr1:171810621-172387606:+,dynamin_3	EPLC272H_LUNG	0.43	1	0.0239	FALSE	0	0	0	1	0	FALSE	ACH-000585
EPLC272H_LUNG	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	10	1	0.23	0.0159	0.008	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	EPLC272H_LUNG	0.23	1	0.0239	TRUE	465	1949	224	605	0	FALSE	ACH-000585
EPLC272H_LUNG	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.6	1	0.0159	0.008	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EPLC272H_LUNG	0.6	1	0.0239	FALSE	407	2205	196	549	0	FALSE	ACH-000585
EPLC272H_LUNG	ADRA1B--ANKLE2	2	0	ADRA1B	2072	chr5:159344861:+	ANKLE2	13494	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	ADRA1B->adrenoceptor_alpha_1B,chr5:159343790-159399551:+,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	ALMS1--RAI14	2	0	ALMS1	1435	chr2:73613320:+	RAI14	53544	chr5:34757573:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	ALMS1->ALMS1,_centrosome_and_basal_body_associated_protein,chr2:73612886-73837920:+,RAI14->chr5:34656342-34832732:+,retinoic_acid_induced_14	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	AP000487.5--BCAR3	2	0	AP000487.5	1391	chr11:70244204:-	BCAR3	27656	chr1:94049678:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	AP000487.5->chr11:70218352-70244594:-,BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	ARHGEF1--PTPRA	2	0	ARHGEF1	20577	chr19:42410955:+	PTPRA	50329	chr20:3016231:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	ARHGEF1->Rho_guanine_nucleotide_exchange_factor_1,chr19:42387228-42434302:+,PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	BBS1--PRRC2B	2	0	BBS1	10991	chr11:66294393:+	PRRC2B	46001	chr9:134361472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	BBS1->Bardet-Biedl_syndrome_1,chr11:66278077-66301098:+,PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	CASC4--NUSAP1	2	0	CASC4	8731	chr15:44630515:+	NUSAP1	33230	chr15:41650347:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+,NUSAP1->chr15:41624892-41673248:+,nucleolar_and_spindle_associated_protein_1	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	CD46--NAP1L1	2	0	CD46	6873	chr1:207940540:+	NAP1L1	32098	chr12:76448870:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	CD46->CD46_molecule,Oncogene{Bushman},chr1:207925402-207968858:+,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	CPSF6--ATP6V0B	2	0	CPSF6	11046	chr12:69656342:+	ATP6V0B	21997	chr1:44442262:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,ATP6V0B->ATPase_H+_transporting_V0_subunit_b,chr1:44440159-44443967:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	DEDD2--SLC38A1	2	0	DEDD2	6504	chr19:42713852:-	SLC38A1	28913	chr12:46594981:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	DEDD2->chr19:42702750-42724292:-,death_effector_domain_containing_2,SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	DEPTOR--EXT1	2	0	DEPTOR	1252	chr8:120886208:+	EXT1	18392	chr8:118849440:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+,EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	FAM110A--FKBP1A	2	0	FAM110A	1237	chr20:814594:+	FKBP1A	13821	chr20:1356247:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	FAM110A->chr20:814358-838106:+,family_with_sequence_similarity_110_member_A,FKBP1A->FK506_binding_protein_1A,chr20:1349622-1373806:-	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	FAM175B--NGRN	2	0	FAM175B	2208	chr10:126495490:+	NGRN	15139	chr15:90809520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	FAM175B->chr10:126490354-126525239:+,family_with_sequence_similarity_175_member_B,NGRN->chr15:90808891-90816463:+,neugrin,_neurite_outgrowth_associated	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	GPATCH1--PSMG3	2	0	GPATCH1	21272	chr19:33617639:+	PSMG3	27331	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	GPATCH1->G-patch_domain_containing_1,chr19:33571786-33621448:+,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	IFT43--ATG14	2	0	IFT43	4808	chr14:76488737:+	ATG14	17200	chr14:55864152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	IFT43->chr14:76368479-76550928:+,intraflagellar_transport_43,ATG14->autophagy_related_14,chr14:55833110-55878576:-	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	INPP5F--BAG3	2	0	INPP5F	1263	chr10:121485871:+	BAG3	31080	chr10:121429363:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	LOCAL_REARRANGEMENT:+:[48278],INPP5F->chr10:121485609-121588652:+,inositol_polyphosphate-5-phosphatase_F,BAG3->BCL2_associated_athanogene_3,Oncogene{Bushman},chr10:121410882-121437331:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	2	0	1	1	TRUE	ACH-000585
EPLC272H_LUNG	IP6K2--CCT3	2	0	IP6K2	15311	chr3:48730387:-	CCT3	24005	chr1:156307580:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	IP6K2->chr3:48725436-48777786:-,inositol_hexakisphosphate_kinase_2,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	KNDC1--TYW5	2	0	KNDC1	1123	chr10:134974073:+	TYW5	44916	chr2:200801215:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	KNDC1->chr10:134973951-135039916:+,kinase_non-catalytic_C-lobe_domain_(KIND)_containing_1,TYW5->chr2:200794698-200820459:-,tRNA-yW_synthesizing_protein_5	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	LARP1--GNAS	2	0	LARP1	2848	chr5:154135753:+	GNAS	43488	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	1	0	1	1	TRUE	ACH-000585
EPLC272H_LUNG	LCOR--ATP5C1	2	0	LCOR	1140	chr10:98592156:+	ATP5C1	24353	chr10:7839010:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	LCOR->chr10:98592017-98740800:+,ligand_dependent_nuclear_receptor_corepressor,ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	LMBR1--UBE3C	2	0	LMBR1	1303	chr7:156685622:-	UBE3C	38536	chr7:156956504:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Left_Ventricle=1},LMBR1->chr7:156461646-156685924:-,limb_development_membrane_protein_1,UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	MED18--CLPTM1L	2	0	MED18	2632	chr1:28657246:+	CLPTM1L	14071	chr5:1334498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	MED18->chr1:28655513-28662476:+,mediator_complex_subunit_18,CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	NARF--BAIAP2	2	0	NARF	1651	chr17:80416706:+	BAIAP2	32312	chr17:79058632:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	NARF->chr17:80416056-80448413:+,nuclear_prelamin_A_recognition_factor,BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	NUMB--VPS8	2	0	NUMB	5521	chr14:73925199:-	VPS8	82674	chr3:184689437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-,VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	PACS2--MAP2K2	2	0	PACS2	5362	chr14:105814917:+	MAP2K2	35603	chr19:4110653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	PACS2->chr14:105766900-105864484:+,phosphofurin_acidic_cluster_sorting_protein_2,MAP2K2->ArcherDX_panel,FoundationOne_panel,chr19:4090319-4124126:-,mitogen-activated_protein_kinase_kinase_2	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	PAN3--FAM193B	2	0	PAN3	4842	chr13:28752072:+	FAM193B	32013	chr5:176966148:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	PAN3->PAN3_poly(A)_specific_ribonuclease_subunit,chr13:28712643-28869475:+,FAM193B->chr5:176946789-176981542:-,family_with_sequence_similarity_193_member_B	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	PCSK6--SCG5	2	0	PCSK6	13496	chr15:101922297:-	SCG5	46987	chr15:32988715:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	PCSK6->chr15:101840818-102065405:-,proprotein_convertase_subtilisin/kexin_type_6,SCG5->chr15:32933877-32989299:+,secretogranin_V	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	PLOD3--RGS20	2	0	PLOD3	10035	chr7:100852134:-	RGS20	19996	chr8:54826057:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	PLOD3->chr7:100849258-100861701:-,procollagen-lysine,2-oxoglutarate_5-dioxygenase_3,RGS20->chr8:54764368-54871863:+,regulator_of_G-protein_signaling_20	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	POLR2J3--ANXA3	2	0	POLR2J3	5847	chr7:102207444:-	ANXA3	24231	chr4:79500181:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,ANXA3->annexin_A3,chr4:79472673-79531597:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	RLF--SKA2	2	0	RLF	1264	chr1:40627308:+	SKA2	23000	chr17:57189706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,SKA2->chr17:57187312-57232630:-,spindle_and_kinetochore_associated_complex_subunit_2	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	RNF121--NADSYN1	2	0	RNF121	3604	chr11:71671937:+	NADSYN1	43367	chr11:71208529:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	RNF121--PICALM	2	0	RNF121	10131	chr11:71701763:+	PICALM	19322	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	RP11-108K3.1--USP8	2	0	RP11-108K3.1	1194	chr15:51329878:+	USP8	24113	chr15:50781998:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RP11-108K3.1->chr15:51329685-51586109:+,USP8->chr15:50716577-50793280:+,ubiquitin_specific_peptidase_8	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	RPGR--ADK	2	0	RPGR	1225	chrX:38186593:-	ADK	40100	chr10:76349040:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RPGR->chrX:38128416-38186817:-,retinitis_pigmentosa_GTPase_regulator,ADK->adenosine_kinase,chr10:75910960-76469061:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	RPL15--EEF1D	2	0	RPL15	1695	chr3:23958730:+	EEF1D	22275	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RPL15->chr3:23958036-23965183:+,ribosomal_protein_L15,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	2	0	TRUE	ACH-000585
EPLC272H_LUNG	RPRD1B--TAX1BP1	2	0	RPRD1B	8294	chr20:36694658:+	TAX1BP1	36469	chr7:27867357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RPRD1B->chr20:36661948-36720768:+,regulation_of_nuclear_pre-mRNA_domain_containing_1B,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	RRP1B--METTL3	2	0	RRP1B	2330	chr21:45089847:+	METTL3	32119	chr14:21967281:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RRP1B->chr21:45079429-45115958:+,ribosomal_RNA_processing_1B,METTL3->chr14:21966277-21979517:-,methyltransferase_like_3	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	SCLT1--ARNT	2	0	SCLT1	2608	chr4:130003461:-	ARNT	48137	chr1:150807116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	SCLT1->chr4:129786076-130014764:-,sodium_channel_and_clathrin_linker_1,ARNT->Oncogene{Bushman},aryl_hydrocarbon_receptor_nuclear_translocator,chr1:150782181-150849244:-	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	SEL1L--C9orf3	2	0	SEL1L	1187	chr14:82000019:-	C9orf3	66449	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	SEL1L->Oncogene{Bushman},SEL1L_ERAD_E3_ligase_adaptor_subunit,chr14:81937893-82000205:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	TAF9B--ITGB3BP	2	0	TAF9B	3792	chrX:77392412:-	ITGB3BP	22255	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	TAF9B->TATA-box_binding_protein_associated_factor_9b,chrX:77385245-77395203:-,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	TRA2B--FNDC3B	2	0	TRA2B	1312	chr3:185655613:-	FNDC3B	25640	chr3:171830242:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	TYMS--USP36	2	0	TYMS	4286	chr18:662320:+	USP36	15335	chr17:76834832:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	TYMS->chr18:657604-673578:+,thymidylate_synthetase,USP36->chr17:76783463-76837523:-,ubiquitin_specific_peptidase_36	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	UBE2L3--CNPPD1	2	0	UBE2L3	5318	chr22:21965332:+	CNPPD1	13098	chr2:220041569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	UBR5--MFNG	2	0	UBR5	27248	chr8:103305833:-	MFNG	60607	chr22:37876807:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,MFNG->MFNG_O-fucosylpeptide_3-beta-N-acetylglucosaminyltransferase,chr22:37865101-37882439:-	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	WRB--ORC5	2	0	WRB	4188	chr21:40759781:+	ORC5	24979	chr7:103841406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	WRB->chr21:40752170-40800454:+,tryptophan_rich_basic_protein,ORC5->chr7:103766788-103848495:-,origin_recognition_complex_subunit_5	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	ZNF107--TUBGCP6	2	0	ZNF107	7065	chr7:64152338:+	TUBGCP6	29404	chr22:50658444:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	ZNF107->chr7:64126511-64171404:+,zinc_finger_protein_107,TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6	EPLC272H_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	MIR4435-1HG--ANAPC1	1	2	MIR4435-1HG	14499	chr2:112101638:-	ANAPC1	48681	chr2:112596089:-	ONLY_REF_SPLICE	NO	12	54	0.2	0.05	0.008	0.0159	MIR4435-1HG->chr2:111953927-112252677:-,ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-	EPLC272H_LUNG	0.05	0.2	0.0239	TRUE	0	1	0	4	1	TRUE	ACH-000585
EPLC272H_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.008	0.0159	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EPLC272H_LUNG	1	1	0.0239	FALSE	192	492	57	212	0	FALSE	ACH-000585
EPLC272H_LUNG	PTPRG--TRIP12	1	1	PTPRG	36033	chr3:62263354:+	TRIP12	54317	chr2:230723547:-	ONLY_REF_SPLICE	YES	54	57	0.04	0.03	0.008	0.008	PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	EPLC272H_LUNG	0.03	0.04	0.016	TRUE	0	0	0	1	0	FALSE	ACH-000585
EPLC272H_LUNG	SEL1L--SLC39A9	1	1	SEL1L	1187	chr14:82000019:-	SLC39A9	32108	chr14:69890811:+	ONLY_REF_SPLICE	YES	128	65	0.02	0.03	0.008	0.008	GTEx&tcga_normals:1/3694=0.03%,SEL1L->Oncogene{Bushman},SEL1L_ERAD_E3_ligase_adaptor_subunit,chr14:81937893-82000205:-,SLC39A9->chr14:69864732-69929105:+,solute_carrier_family_39_member_9	EPLC272H_LUNG	0.02	0.03	0.016	TRUE	0	0	0	1	0	FALSE	ACH-000585
EPLC272H_LUNG	SLC25A17--ST13	1	1	SLC25A17	1205	chr22:41215199:-	ST13	21943	chr22:41246884:-	ONLY_REF_SPLICE	YES	159	832	0.01	0	0.008	0.008	LOCAL_REARRANGEMENT:-:[5136],SLC25A17->chr22:41165634-41215403:-,solute_carrier_family_25_member_17,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	EPLC272H_LUNG	0	0.01	0.016	FALSE	0	0	0	2	0	FALSE	ACH-000585
EPLC272H_LUNG	TANC2--MGAT5B	1	1	TANC2	19699	chr17:61417693:+	MGAT5B	66070	chr17:74934070:+	ONLY_REF_SPLICE	YES	43	16	0.04	0.11	0.008	0.008	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,MGAT5B->chr17:74864538-74946475:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,_isozyme_B	EPLC272H_LUNG	0.04	0.11	0.016	TRUE	0	0	0	1	0	FALSE	ACH-000585
EPLC272H_LUNG	TMEM182--VWA3B	1	1	TMEM182	5940	chr2:103380886:+	VWA3B	49217	chr2:98887145:+	ONLY_REF_SPLICE	NO	25	1	0.07	0.67	0.008	0.008	TMEM182->chr2:103353367-103460352:+,transmembrane_protein_182,VWA3B->chr2:98703579-98929762:+,von_Willebrand_factor_A_domain_containing_3B	EPLC272H_LUNG	0.07	0.67	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000585
EPLC272H_LUNG	TNRC18--ACTB	1	1	TNRC18	7205	chr7:5430116:-	ACTB	45979	chr7:5569294:-	ONLY_REF_SPLICE	YES	36	156	0.05	0.01	0.008	0.008	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Colon_-_Sigmoid=1},TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	EPLC272H_LUNG	0.01	0.05	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000585
EPLC272H_LUNG	UBAP1--SRP9	1	1	UBAP1	1236	chr9:34179238:+	SRP9	14925	chr1:225965637:+	ONLY_REF_SPLICE	YES	52	45	0.04	0.04	0.008	0.008	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	EPLC272H_LUNG	0.04	0.04	0.016	TRUE	0	0	0	2	0	FALSE	ACH-000585
EPLC272H_LUNG	YDJC--UBE2L3	1	1	YDJC	1757	chr22:21983597:-	UBE2L3	10108	chr22:21965146:+	ONLY_REF_SPLICE	YES	134	869	0.01	0	0.008	0.008	LOCAL_INVERSION:-:+:[4055],YDJC->YdjC_homolog_(bacterial),chr22:21982378-21984353:-,UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3	EPLC272H_LUNG	0	0.01	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000585
SNB75_CENTRAL_NERVOUS_SYSTEM	WI2-1896O14.1--RP11-353N4.1	126	18	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.281	0.183	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	1.464	TRUE	361	258	24	38	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	92	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9354	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.9354	TRUE	402	216	10	229	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	71	10	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7219	0.1017	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.8236	TRUE	508	994	45	981	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL6A1	70	1	COL1A1	6491	chr17:48273284:-	COL6A1	32210	chr21:47414081:+	ONLY_REF_SPLICE	NO	3438	1434	0.02	0.05	0.7117	0.0102	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	SNB75_CENTRAL_NERVOUS_SYSTEM	0.02	0.05	0.7219	TRUE	0	1	0	5	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	NCAPD3--DDX11L2	53	0	NCAPD3	2592	chr11:134093757:-	DDX11L2	37461	chr2:114359006:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5389	0	NCAPD3->chr11:134020014-134095348:-,non-SMC_condensin_II_complex_subunit_D3,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.5389	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	MTAP--CDKN2A	48	11	MTAP	12211	chr9:21859424:+	CDKN2A	32053	chr9:21968241:-	ONLY_REF_SPLICE	YES	89	195	0.4	0.23	0.488	0.1118	LOCAL_INVERSION:+:-:[36105],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A	SNB75_CENTRAL_NERVOUS_SYSTEM	0.23	0.4	0.5998	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	PLAA--NBEA	41	14	PLAA	9051	chr9:26919308:-	NBEA	57830	chr13:35864526:+	ONLY_REF_SPLICE	YES	30	2	0.65	0.96	0.4168	0.1423	HGNC_GENEFAM,PLAA->chr9:26904081-26947461:-,phospholipase_A2_activating_protein,NBEA->chr13:35516424-36247159:+,neurobeachin	SNB75_CENTRAL_NERVOUS_SYSTEM	0.65	0.96	0.5591	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	42	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.427	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.427	TRUE	519	3926	326	965	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	25	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2542	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.2542	TRUE	0	0	0	518	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	ELAVL2--EBPL	20	13	ELAVL2	2776	chr9:23821603:-	EBPL	23638	chr13:50237331:-	ONLY_REF_SPLICE	YES	3	7	0.92	0.82	0.2033	0.1322	ELAVL2->ELAV_like_neuron-specific_RNA_binding_protein_2,chr9:23690102-23826335:-,EBPL->chr13:50234859-50265611:-,emopamil_binding_protein_like	SNB75_CENTRAL_NERVOUS_SYSTEM	0.82	0.92	0.3355	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	ERICH1--AC006004.1	18	0	ERICH1	2423	chr8:681140:-	AC006004.1	28184	chr7:146782914:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.183	0	ERICH1->Oncogene{Bushman},chr8:564746-688106:-,glutamate_rich_1,AC006004.1->chr7:146778026-146794701:-	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.183	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	17	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1728	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.1728	FALSE	292	1546	117	613	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL6A1	14	7	COL1A1	13246	chr17:48266529:-	COL6A1	32210	chr21:47414081:+	ONLY_REF_SPLICE	YES	3358	1434	0.01	0.01	0.1423	0.0712	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	SNB75_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.2135	TRUE	0	0	0	3	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	COL6A1--COL1A1	15	3	COL6A1	13945	chr21:47419132:+	COL1A1	26434	chr17:48275118:-	INCL_NON_REF_SPLICE	NO	1200	2976	0.01	0.01	0.1525	0.0305	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	SNB75_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.183	FALSE	0	2	0	1	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	FOCAD--RP11-399D6.2	13	6	FOCAD	7198	chr9:20720533:+	RP11-399D6.2	68662	chr9:22820737:+	ONLY_REF_SPLICE	YES	18	0	0.51	1	0.1322	0.061	FOCAD->chr9:20658308-20995954:+,focadhesin,RP11-399D6.2->chr9:22646199-22824212:+	SNB75_CENTRAL_NERVOUS_SYSTEM	0.51	1	0.1932	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	14	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1423	0.0203	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.1626	FALSE	499	1288	110	792	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	12	1	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	942	0	0.01	1	0.122	0.0102	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNB75_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.1322	TRUE	1	0	0	97	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	ELAVL2--EBPL	8	13	ELAVL2	2780	chr9:23821599:-	EBPL	21172	chr13:50243978:-	INCL_NON_REF_SPLICE	YES	4	3	0.84	0.88	0.0813	0.1322	ELAVL2->ELAV_like_neuron-specific_RNA_binding_protein_2,chr9:23690102-23826335:-,EBPL->chr13:50234859-50265611:-,emopamil_binding_protein_like	SNB75_CENTRAL_NERVOUS_SYSTEM	0.84	0.88	0.2135	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	SAMD5--SASH1	11	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1118	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.1118	TRUE	53	396	64	110	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	10	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1017	0.0102	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.1119	FALSE	416	2512	207	587	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	8	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.0813	0.061	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNB75_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.1423	TRUE	458	1351	185	561	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0915	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0915	TRUE	0	0	0	434	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	CDKN2A--MIR31HG	7	7	CDKN2A	7230	chr9:21970901:-	MIR31HG	14562	chr9:21477291:-	ONLY_REF_SPLICE	YES	249	1	0.05	0.93	0.0712	0.0712	CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A,MIR31HG->MIR31_host_gene,chr9:21455641-21559668:-	SNB75_CENTRAL_NERVOUS_SYSTEM	0.05	0.93	0.1424	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	COL6A1--COL1A1	8	2	COL6A1	10084	chr21:47412724:+	COL1A1	28526	chr17:48273026:-	ONLY_REF_SPLICE	NO	1401	3320	0.01	0	0.0813	0.0203	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	SNB75_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.1016	TRUE	0	1	0	1	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	8	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0813	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0813	TRUE	347	1186	183	220	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	MTAP--CDKN2A	7	4	MTAP	9899	chr9:21854869:+	CDKN2A	32053	chr9:21968241:-	ONLY_REF_SPLICE	YES	56	195	0.16	0.05	0.0712	0.0407	LOCAL_INVERSION:+:-:[36105],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A	SNB75_CENTRAL_NERVOUS_SYSTEM	0.05	0.16	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	6	8	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	20	0	0.41	1	0.061	0.0813	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SNB75_CENTRAL_NERVOUS_SYSTEM	0.41	1	0.1423	FALSE	21	45	1	60	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	7	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	58	0	0.15	1	0.0712	0.0305	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SNB75_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.1017	FALSE	56	216	12	147	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	WI2-1896O14.1--RP11-353N4.1	3	19	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	5570	chr1:149591759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0.1932	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.2237	TRUE	361	258	24	38	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	7	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.62	1	0.0712	0.0102	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNB75_CENTRAL_NERVOUS_SYSTEM	0.62	1	0.0814	FALSE	125	705	46	456	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	RP11-308N19.1--RP11-308N19.4	6	4	RP11-308N19.1	6003	chr9:109320864:+	RP11-308N19.4	15583	chr9:109427034:+	ONLY_REF_SPLICE	YES	60	0	0.14	1	0.061	0.0407	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	SNB75_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.1017	FALSE	0	0	0	4	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	6	3	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	868	0	0.01	1	0.061	0.0305	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNB75_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0915	FALSE	1	0	0	97	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	MAF--RP11-679B19.2	6	3	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0.0305	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0915	TRUE	48	25	3	38	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	6	3	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	3	1	0.75	0.061	0.0305	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SNB75_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0915	TRUE	254	575	65	124	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL6A1	4	10	COL1A1	13020	chr17:48266755:-	COL6A1	29388	chr21:47410903:+	INCL_NON_REF_SPLICE	NO	2749	423	0.01	0.03	0.0407	0.1017	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	SNB75_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.1424	FALSE	0	6	0	3	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0407	0.1017	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNB75_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.1424	FALSE	499	1288	110	792	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	6	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0.0203	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0813	FALSE	499	1288	110	792	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	RP11-308N19.1--RP11-308N19.4	5	5	RP11-308N19.1	8273	chr9:109366218:+	RP11-308N19.4	13391	chr9:109400440:+	INCL_NON_REF_SPLICE	YES	20	0	0.33	1	0.0508	0.0508	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	SNB75_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.1016	FALSE	0	0	0	2	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	6	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	2	1	0.78	0.061	0.0102	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNB75_CENTRAL_NERVOUS_SYSTEM	0.78	1	0.0712	TRUE	477	1352	189	275	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--IFI27	6	0	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.061	TRUE	0	2	0	13	2	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL6A1	5	3	COL1A1	12381	chr17:48267394:-	COL6A1	33574	chr21:47417636:+	INCL_NON_REF_SPLICE	YES	3325	1151	0	0.01	0.0508	0.0305	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	SNB75_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0813	FALSE	0	6	0	4	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	5	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	12	1	0.4	0.0508	0.0305	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNB75_CENTRAL_NERVOUS_SYSTEM	0.4	1	0.0813	TRUE	465	1949	224	605	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	5	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	27	35	0.21	0.17	0.0508	0.0203	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNB75_CENTRAL_NERVOUS_SYSTEM	0.17	0.21	0.0711	TRUE	267	562	48	632	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	4	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0.061	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.1017	FALSE	515	4851	409	746	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	PLCB1--HIPK2	5	1	PLCB1	3721	chr20:8352097:+	HIPK2	58667	chr7:139311531:-	ONLY_REF_SPLICE	YES	8	34	0.43	0.15	0.0508	0.0102	PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1,HIPK2->Oncogene{Bushman},chr7:139246316-139477577:-,homeodomain_interacting_protein_kinase_2	SNB75_CENTRAL_NERVOUS_SYSTEM	0.15	0.43	0.061	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	RTN4--MT-CO3	5	0	RTN4	5905	chr2:55277536:-	MT-CO3	22780	chrM:9268:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0508	0	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0508	FALSE	0	0	0	3	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL6A1	4	3	COL1A1	12405	chr17:48267370:-	COL6A1	33571	chr21:47417633:+	INCL_NON_REF_SPLICE	NO	3293	1166	0	0.01	0.0407	0.0305	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	SNB75_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0712	FALSE	0	6	0	4	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	ELAVL2--EBPL	1	15	ELAVL2	3154	chr9:23821225:-	EBPL	21168	chr13:50243982:-	ONLY_REF_SPLICE	YES	4	3	0.8	0.84	0.0102	0.1525	ELAVL2->ELAV_like_neuron-specific_RNA_binding_protein_2,chr9:23690102-23826335:-,EBPL->chr13:50234859-50265611:-,emopamil_binding_protein_like	SNB75_CENTRAL_NERVOUS_SYSTEM	0.8	0.84	0.1627	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	4	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.32	1	0.0407	0.0203	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNB75_CENTRAL_NERVOUS_SYSTEM	0.32	1	0.061	FALSE	164	806	69	479	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL6A1	2	8	COL1A1	12735	chr17:48267040:-	COL6A1	29378	chr21:47410893:+	ONLY_REF_SPLICE	YES	3674	446	0	0.02	0.0203	0.0813	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	SNB75_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.1016	TRUE	0	6	0	3	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0407	TRUE	0	0	0	434	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	4	0	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0407	TRUE	274	363	69	150	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	3	3	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	866	0	0.01	1	0.0305	0.0305	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNB75_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.061	FALSE	1	0	0	97	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	IKBIP--SLC25A3	3	1	IKBIP	2709	chr12:99028074:-	SLC25A3	14713	chr12:98991634:+	ONLY_REF_SPLICE	YES	132	554	0.03	0.01	0.0305	0.0102	LOCAL_INVERSION:-:+:[11237],IKBIP->IKBKB_interacting_protein,chr12:99007183-99038891:-,SLC25A3->chr12:98987369-98995946:+,solute_carrier_family_25_member_3	SNB75_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0407	FALSE	0	0	0	3	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	RP11-308N19.1--RP11-308N19.4	2	5	RP11-308N19.1	7091	chr9:109350745:+	RP11-308N19.4	13391	chr9:109400440:+	ONLY_REF_SPLICE	YES	42	0	0.14	1	0.0203	0.0508	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	SNB75_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.0711	FALSE	0	0	0	2	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	RP11-308N19.1--RP11-308N19.4	2	5	RP11-308N19.1	7091	chr9:109350745:+	RP11-308N19.4	15583	chr9:109427034:+	ONLY_REF_SPLICE	NO	42	0	0.14	1	0.0203	0.0508	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	SNB75_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.0711	FALSE	2	0	0	5	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	CDKN2B-AS1--DLEU1	3	0	CDKN2B-AS1	6566	chr9:22049227:+	DLEU1	45846	chr13:50964334:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+,DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding)	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	CDKN2B-AS1--DLEU1	3	0	CDKN2B-AS1	11547	chr9:22064017:+	DLEU1	45846	chr13:50964334:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+,DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding)	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	ELAVL2--EBPL	1	7	ELAVL2	2776	chr9:23821603:-	EBPL	25496	chr13:50235344:-	ONLY_REF_SPLICE	YES	3	39	0.73	0.17	0.0102	0.0712	ELAVL2->ELAV_like_neuron-specific_RNA_binding_protein_2,chr9:23690102-23826335:-,EBPL->chr13:50234859-50265611:-,emopamil_binding_protein_like	SNB75_CENTRAL_NERVOUS_SYSTEM	0.17	0.73	0.0814	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL6A1	2	1	COL1A1	4465	chr17:48275310:-	COL6A1	29378	chr21:47410893:+	ONLY_REF_SPLICE	NO	2709	446	0	0.01	0.0203	0.0102	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	SNB75_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0305	FALSE	0	3	0	2	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	ARL15--NDUFS4	2	0	ARL15	1151	chr5:53606262:-	NDUFS4	15711	chr5:52899282:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0203	TRUE	0	1	0	3	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	CDKN2B-AS1--DLEU1	2	0	CDKN2B-AS1	7702	chr9:22056386:+	DLEU1	45846	chr13:50964334:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+,DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding)	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	PLXNB3--FLNA	2	0	PLXNB3	2219	chrX:153031035:+	FLNA	33211	chrX:153583440:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx&tcga_normals:1/3694=0.03%,PLXNB3->chrX:153029651-153044801:+,plexin_B3,FLNA->chrX:153576892-153603006:-,filamin_A	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	PLXNB3--FLNA	2	0	PLXNB3	2219	chrX:153031035:+	FLNA	21960	chrX:153596106:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx&tcga_normals:1/3694=0.03%,PLXNB3->chrX:153029651-153044801:+,plexin_B3,FLNA->chrX:153576892-153603006:-,filamin_A	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	PPP1R12C--CNN2	2	0	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0203	TRUE	35	34	3	30	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNB75_CENTRAL_NERVOUS_SYSTEM	1	1	0.0203	FALSE	93	270	15	244	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	1	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	58	0	0.06	1	0.0102	0.0305	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SNB75_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0407	FALSE	1	13	0	24	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	RP11-308N19.1--RP11-308N19.4	1	3	RP11-308N19.1	4891	chr9:109262786:+	RP11-308N19.4	15583	chr9:109427034:+	ONLY_REF_SPLICE	NO	93	0	0.04	1	0.0102	0.0305	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	SNB75_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0407	FALSE	0	0	0	4	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	CDKN2A--MIR31HG	1	2	CDKN2A	2163	chr9:21994138:-	MIR31HG	14562	chr9:21477291:-	ONLY_REF_SPLICE	NO	278	1	0.01	0.75	0.0102	0.0203	CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A,MIR31HG->MIR31_host_gene,chr9:21455641-21559668:-	SNB75_CENTRAL_NERVOUS_SYSTEM	0.01	0.75	0.0305	FALSE	0	2	0	1	2	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	COL6A1--COL1A1	1	2	COL6A1	11147	chr21:47414143:+	COL1A1	28526	chr17:48273026:-	ONLY_REF_SPLICE	NO	1238	3320	0	0	0.0102	0.0203	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	SNB75_CENTRAL_NERVOUS_SYSTEM	0	0	0.0305	FALSE	0	0	0	1	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	1	39	0.75	0.07	0.0102	0.0203	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNB75_CENTRAL_NERVOUS_SYSTEM	0.07	0.75	0.0305	FALSE	0	23	1	67	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	RP11-308N19.1--RP11-308N19.4	1	2	RP11-308N19.1	1799	chr9:109041471:+	RP11-308N19.4	13391	chr9:109400440:+	ONLY_REF_SPLICE	YES	54	0	0.05	1	0.0102	0.0203	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	SNB75_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.0305	FALSE	2	0	0	2	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	COL11A1--AGRN	1	1	COL11A1	19257	chr1:103470164:-	AGRN	77959	chr1:985807:+	ONLY_REF_SPLICE	YES	646	373	0	0.01	0.0102	0.0102	COL11A1->Oncogene{Bushman},chr1:103342023-103574052:-,collagen_type_XI_alpha_1,AGRN->agrin,chr1:955503-991496:+	SNB75_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL6A1	1	1	COL1A1	6847	chr17:48272928:-	COL6A1	32210	chr21:47414081:+	ONLY_REF_SPLICE	NO	2923	1434	0	0	0.0102	0.0102	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	SNB75_CENTRAL_NERVOUS_SYSTEM	0	0	0.0204	FALSE	0	1	0	5	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	COL6A1--COL1A1	1	1	COL6A1	9491	chr21:47412131:+	COL1A1	35554	chr17:48265998:-	ONLY_REF_SPLICE	YES	1070	2079	0	0	0.0102	0.0102	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	SNB75_CENTRAL_NERVOUS_SYSTEM	0	0	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	HIPK2--PLCB1	1	1	HIPK2	8110	chr7:139311347:-	PLCB1	37221	chr20:8608941:+	ONLY_REF_SPLICE	YES	96	8	0.02	0.2	0.0102	0.0102	HIPK2->Oncogene{Bushman},chr7:139246316-139477577:-,homeodomain_interacting_protein_kinase_2,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	SNB75_CENTRAL_NERVOUS_SYSTEM	0.02	0.2	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	LRRCC1--PPAP2A	1	1	LRRCC1	4034	chr8:86022415:+	PPAP2A	28237	chr5:54763977:-	ONLY_REF_SPLICE	NO	18	356	0.1	0.01	0.0102	0.0102	LRRCC1->chr8:86019382-86058311:+,leucine_rich_repeat_and_coiled-coil_centrosomal_protein_1,PPAP2A->chr5:54720682-54830878:-	SNB75_CENTRAL_NERVOUS_SYSTEM	0.01	0.1	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	PPP1R12C--IFITM10	1	1	PPP1R12C	8950	chr19:55610152:-	IFITM10	21303	chr11:1769349:-	ONLY_REF_SPLICE	YES	74	118	0.03	0.02	0.0102	0.0102	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,IFITM10->chr11:1753640-1771821:-,interferon_induced_transmembrane_protein_10	SNB75_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.0204	TRUE	1	1	0	2	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	RP11-308N19.1--RP11-308N19.4	1	1	RP11-308N19.1	7091	chr9:109350745:+	RP11-308N19.4	18874	chr9:109435150:+	ONLY_REF_SPLICE	NO	42	2	0.05	0.5	0.0102	0.0102	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	SNB75_CENTRAL_NERVOUS_SYSTEM	0.05	0.5	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000504
SNB75_CENTRAL_NERVOUS_SYSTEM	SPIN1--HNRNPK	1	1	SPIN1	1120	chr9:91003453:+	HNRNPK	19193	chr9:86593367:-	ONLY_REF_SPLICE	YES	26	387	0.07	0.01	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},SPIN1->chr9:91003334-91093609:+,spindlin_1,HNRNPK->Oncogene{Bushman},chr9:86582998-86595569:-,heterogeneous_nuclear_ribonucleoprotein_K	SNB75_CENTRAL_NERVOUS_SYSTEM	0.01	0.07	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000504
GAMG_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	65	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6663	0.1538	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.8201	TRUE	508	994	45	981	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	38	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	151	6	0.21	0.87	0.3895	0.0308	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	GAMG_CENTRAL_NERVOUS_SYSTEM	0.21	0.87	0.4203	TRUE	519	3926	326	965	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	MAP4K4--AFF3	35	10	MAP4K4	2689	chr2:102315000:+	AFF3	56316	chr2:100453986:-	ONLY_REF_SPLICE	YES	72	15	0.38	0.75	0.3588	0.1025	MAP4K4->chr2:102313312-102511149:+,mitogen-activated_protein_kinase_kinase_kinase_kinase_4,AFF3->AF4/FMR2_family_member_3,Oncogene{Bushman},chr2:100162323-100759201:-	GAMG_CENTRAL_NERVOUS_SYSTEM	0.38	0.75	0.4613	TRUE	0	0	0	1	0	TRUE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	23	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2358	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.2358	TRUE	7	10	0	216	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	12	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.123	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.123	TRUE	0	0	0	518	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	6	17	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	34	75	0.4	0.23	0.0615	0.1743	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	GAMG_CENTRAL_NERVOUS_SYSTEM	0.23	0.4	0.2358	TRUE	267	562	48	632	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	8	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	29	78	0.36	0.17	0.082	0.082	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	GAMG_CENTRAL_NERVOUS_SYSTEM	0.17	0.36	0.164	TRUE	267	562	48	632	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	6	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0615	0.0615	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.123	FALSE	416	2512	207	587	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	REV3L--RPL28	7	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0718	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0718	TRUE	22	156	2	142	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	MANBA--KDR	6	2	MANBA	7396	chr4:103635595:-	KDR	51585	chr4:55948802:-	ONLY_REF_SPLICE	YES	13	2	0.38	0.8	0.0615	0.0205	MANBA->chr4:103552660-103682151:-,mannosidase_beta,KDR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:55944644-55991756:-,kinase_insert_domain_receptor	GAMG_CENTRAL_NERVOUS_SYSTEM	0.38	0.8	0.082	TRUE	0	0	0	1	0	TRUE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	6	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	16	0	0.3	1	0.0615	0.0103	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	GAMG_CENTRAL_NERVOUS_SYSTEM	0.3	1	0.0718	FALSE	56	216	12	147	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	RP11-634B7.4--TRIM58	5	3	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0513	0.0308	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	GAMG_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.0821	TRUE	158	633	76	73	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	MTAP--CDKN2B-AS1	5	1	MTAP	12211	chr9:21859424:+	CDKN2B-AS1	40771	chr9:22112319:+	ONLY_REF_SPLICE	YES	90	0	0.06	1	0.0513	0.0103	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	GAMG_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0616	FALSE	0	5	0	4	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0513	FALSE	13	9	0	364	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	C1GALT1--COMMD10	4	1	C1GALT1	2767	chr7:7222451:+	COMMD10	23872	chr5:115627214:+	ONLY_REF_SPLICE	YES	151	114	0.03	0.04	0.041	0.0103	C1GALT1->chr7:7196565-7288282:+,core_1_synthase,_glycoprotein-N-acetylgalactosamine_3-beta-galactosyltransferase_1,COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+	GAMG_CENTRAL_NERVOUS_SYSTEM	0.03	0.04	0.0513	TRUE	0	0	0	1	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	85	0.56	0.06	0.041	0.0103	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	GAMG_CENTRAL_NERVOUS_SYSTEM	0.06	0.56	0.0513	FALSE	16	356	14	466	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.041	0.0103	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0513	FALSE	515	4851	409	746	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.041	FALSE	13	9	0	364	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.041	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.041	TRUE	465	1949	224	605	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	3	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	85	0.4	0.04	0.0308	0.0103	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	GAMG_CENTRAL_NERVOUS_SYSTEM	0.04	0.4	0.0411	FALSE	0	48	1	163	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	RP11-476K15.1--CTD-2015H3.2	3	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	3	0	0.57	1	0.0308	0.0103	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	GAMG_CENTRAL_NERVOUS_SYSTEM	0.57	1	0.0411	FALSE	0	46	0	73	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	C1orf86--PODNL1	3	0	C1orf86	11581	chr1:2125078:-	PODNL1	27848	chr19:14047273:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	C1orf86->chr1:2115903-2144159:-,PODNL1->chr19:14042000-14064204:-,podocan-like_1	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	MB21D2--FGF12	3	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0308	FALSE	0	17	0	46	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	SQSTM1--MT-ND4L	3	0	SQSTM1	16338	chr5:179263631:+	MT-ND4L	20801	chrM:10485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	SQSTM1->chr5:179233388-179265078:+,sequestosome_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0308	FALSE	0	0	0	1	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	MAP4K4--AFF3	1	5	MAP4K4	2689	chr2:102315000:+	AFF3	58445	chr2:100360602:-	ONLY_REF_SPLICE	YES	72	25	0.08	0.19	0.0103	0.0513	MAP4K4->chr2:102313312-102511149:+,mitogen-activated_protein_kinase_kinase_kinase_kinase_4,AFF3->AF4/FMR2_family_member_3,Oncogene{Bushman},chr2:100162323-100759201:-	GAMG_CENTRAL_NERVOUS_SYSTEM	0.08	0.19	0.0616	TRUE	0	0	0	1	0	TRUE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	CTC-228N24.3--STX17	2	0	CTC-228N24.3	5579	chr5:127396836:-	STX17	23248	chr9:102677460:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	CTC-228N24.3->chr5:127276118-127418864:-,STX17->chr9:102668915-102732618:+,syntaxin_17	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	GNB1--TPM1	2	0	GNB1	1237	chr1:1822259:-	TPM1	28439	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GAMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	458	1351	185	561	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0103	0.0205	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GAMG_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0308	FALSE	467	2173	244	435	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	RP11-476K15.1--CTD-2015H3.2	1	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0103	0.0103	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	GAMG_CENTRAL_NERVOUS_SYSTEM	0.4	1	0.0206	FALSE	0	46	0	73	0	FALSE	ACH-000098
GAMG_CENTRAL_NERVOUS_SYSTEM	SBNO1--KRT2	1	1	SBNO1	1143	chr12:123849248:-	KRT2	45220	chr12:53039353:-	ONLY_REF_SPLICE	NO	55	0	0.04	1	0.0103	0.0103	SBNO1->Oncogene{Bushman},chr12:123773656-123849390:-,strawberry_notch_homolog_1_(Drosophila),KRT2->chr12:53038342-53045948:-,keratin_2	GAMG_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000098
NCIH3122_LUNG	PRKD1--RP11-423O2.7	417	219	PRKD1	5311	chr14:30194742:-	RP11-423O2.7	35309	chr1:142951557:-	ONLY_REF_SPLICE	YES	87	0	0.88	1	4.5223	2.375	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,RP11-423O2.7->chr1:142950985-142956716:-	NCIH3122_LUNG	0.88	1	6.8973	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	EML4--ALK	86	59	EML4	17403	chr2:42522656:+	ALK	58055	chr2:29446394:-	ONLY_REF_SPLICE	YES	303	0	0.32	1	0.9327	0.6398	Cosmic{samples=10751,mutations=680,papers=477},YOSHIHARA_TCGA_num_samples[LUAD:4|THCA:1],chimerdb_pubmed{nonsmallcell lung cancer (NSCLC),nonsmall cell lung cancers (NSCLC),lung cancer,nonsmall cell lung cancer (NSCLC),nonsmall cell lung carcinoma,lung cancers,nonsmallcell lung cancers (NSCLC)},{Klijn_CCL:Lung=1},EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	NCIH3122_LUNG	0.32	1	1.5725	TRUE	0	1	0	1	1	TRUE	ACH-000337
NCIH3122_LUNG	MT-TA--MT-TC	65	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7049	0.0759	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH3122_LUNG	1	1	0.7808	FALSE	462	80	0	856	0	FALSE	ACH-000337
NCIH3122_LUNG	GTF3C1--AC018892.9	55	16	GTF3C1	4027	chr16:27549105:-	AC018892.9	44779	chr2:97748136:+	INCL_NON_REF_SPLICE	YES	11	6	0.87	0.92	0.5965	0.1735	GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1,AC018892.9->chr2:97746835-97748986:+	NCIH3122_LUNG	0.87	0.92	0.77	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	PRKD1--RP11-423O2.7	1	219	PRKD1	18634	chr14:30098247:-	RP11-423O2.7	35309	chr1:142951557:-	ONLY_REF_SPLICE	YES	159	0	0.58	1	0.0108	2.375	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,RP11-423O2.7->chr1:142950985-142956716:-	NCIH3122_LUNG	0.58	1	2.3858	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	TIMM23B--LINC00843	42	8	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.4555	0.0868	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH3122_LUNG	0.98	1	0.5423	TRUE	508	994	45	981	0	FALSE	ACH-000337
NCIH3122_LUNG	SOS1--ADCY3	33	15	SOS1	8750	chr2:39278285:-	ADCY3	37486	chr2:25095588:-	ONLY_REF_SPLICE	YES	34	34	0.59	0.59	0.3579	0.1627	SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-,ADCY3->adenylate_cyclase_3,chr2:25042038-25142708:-	NCIH3122_LUNG	0.59	0.59	0.5206	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	MT-ND6--MT-ND5	33	2	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	2285	1	0.02	0.3579	0.0217	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH3122_LUNG	0.02	1	0.3796	FALSE	101	855	57	72	0	FALSE	ACH-000337
NCIH3122_LUNG	GOLGB1--MOV10L1	26	29	GOLGB1	22766	chr3:121409517:-	MOV10L1	59034	chr22:50596486:+	ONLY_REF_SPLICE	YES	146	0	0.27	1	0.282	0.3145	GOLGB1->chr3:121382046-121468602:-,golgin_B1,MOV10L1->Mov10_RISC_complex_RNA_helicase_like_1,chr22:50528308-50600119:+	NCIH3122_LUNG	0.27	1	0.5965	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	TIMM23--RP11-464F9.1	21	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2277	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH3122_LUNG	1	1	0.2277	TRUE	519	3926	326	965	0	FALSE	ACH-000337
NCIH3122_LUNG	RP11-96H19.1--RP11-446N19.1	17	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.97	0.97	0.1844	0.1301	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH3122_LUNG	0.97	0.97	0.3145	FALSE	515	4851	409	746	0	FALSE	ACH-000337
NCIH3122_LUNG	RP11-59N23.1--CMAS	16	13	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	22	272	0.57	0.1	0.1735	0.141	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH3122_LUNG	0.1	0.57	0.3145	TRUE	21	102	17	28	0	FALSE	ACH-000337
NCIH3122_LUNG	PLXDC1--TAF13	17	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1844	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH3122_LUNG	1	1	0.1844	TRUE	7	10	0	216	0	FALSE	ACH-000337
NCIH3122_LUNG	MT-ND6--MT-TE	14	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1518	0.0542	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3122_LUNG	1	1	0.206	FALSE	499	1288	110	792	0	FALSE	ACH-000337
NCIH3122_LUNG	MT-ND6--MT-TE	13	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.87	1	0.141	0.0759	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3122_LUNG	0.87	1	0.2169	FALSE	499	1288	110	792	0	FALSE	ACH-000337
NCIH3122_LUNG	NRIP1--AF127936.7	14	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1518	0.0108	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH3122_LUNG	0.94	1	0.1626	FALSE	292	1546	117	613	0	FALSE	ACH-000337
NCIH3122_LUNG	RP11-96H19.1--RP11-446N19.1	8	18	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.0868	0.1952	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH3122_LUNG	0.96	1	0.282	FALSE	407	2205	196	549	0	FALSE	ACH-000337
NCIH3122_LUNG	HSPBP1--GRK5	12	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1301	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH3122_LUNG	1	1	0.1301	TRUE	1	39	0	134	39	FALSE	ACH-000337
NCIH3122_LUNG	OR51S1--TP53I11	12	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1301	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH3122_LUNG	1	1	0.1301	TRUE	402	216	10	229	0	FALSE	ACH-000337
NCIH3122_LUNG	MT-ND6--MT-TE	4	29	MT-ND6	1134	chrM:14540:-	MT-TE	4503	chrM:14765:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0434	0.3145	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3122_LUNG	0.97	1	0.3579	FALSE	499	1288	110	792	0	FALSE	ACH-000337
NCIH3122_LUNG	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1193	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH3122_LUNG	1	1	0.1193	TRUE	0	0	0	434	0	FALSE	ACH-000337
NCIH3122_LUNG	PRKD1--RP11-423O2.7	5	22	PRKD1	4172	chr14:30396455:-	RP11-423O2.7	35309	chr1:142951557:-	ONLY_REF_SPLICE	YES	50	0	0.35	1	0.0542	0.2386	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,RP11-423O2.7->chr1:142950985-142956716:-	NCIH3122_LUNG	0.35	1	0.2928	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	ARHGAP5--AKAP6	9	4	ARHGAP5	2322	chr14:32546641:+	AKAP6	24828	chr14:32902666:+	ONLY_REF_SPLICE	YES	122	0	0.1	1	0.0976	0.0434	{Klijn_CCL:Lung=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	NCIH3122_LUNG	0.1	1	0.141	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	FTH1--ACTG1	10	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1084	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH3122_LUNG	1	1	0.1084	TRUE	0	0	0	64	0	FALSE	ACH-000337
NCIH3122_LUNG	MGST1--RP11-424M22.3	9	4	MGST1	16905	chr12:16536538:+	RP11-424M22.3	25672	chr12:16726445:+	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.0976	0.0434	NEIGHBORS_OVERLAP:+:+:[6529],MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,RP11-424M22.3->chr12:16720345-16726874:+	NCIH3122_LUNG	0.76	1	0.141	FALSE	0	1	0	6	0	FALSE	ACH-000337
NCIH3122_LUNG	MT-ND6--MT-TE	4	22	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0434	0.2386	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3122_LUNG	1	1	0.282	FALSE	499	1288	110	792	0	FALSE	ACH-000337
NCIH3122_LUNG	NRIP1--AF127936.7	8	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.52	1	0.0868	0.0434	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH3122_LUNG	0.52	1	0.1302	FALSE	125	705	46	456	0	FALSE	ACH-000337
NCIH3122_LUNG	EEF2--SEPT9	8	2	EEF2	8886	chr19:3977426:-	SEPT9	30643	chr17:75398638:+	ONLY_REF_SPLICE	YES	2924	1258	0	0.01	0.0868	0.0217	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	NCIH3122_LUNG	0	0.01	0.1085	TRUE	0	0	0	1	0	FALSE	ACH-000337
NCIH3122_LUNG	MT-ND6--MT-TE	7	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0759	0.0542	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3122_LUNG	1	1	0.1301	FALSE	499	1288	110	792	0	FALSE	ACH-000337
NCIH3122_LUNG	MT-TA--MT-TC	7	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0759	0.0542	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH3122_LUNG	1	1	0.1301	FALSE	462	80	0	856	0	FALSE	ACH-000337
NCIH3122_LUNG	C15orf57--CBX3	5	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	117	75	0.13	0.18	0.0542	0.1301	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH3122_LUNG	0.13	0.18	0.1843	TRUE	267	562	48	632	0	FALSE	ACH-000337
NCIH3122_LUNG	MT-ND6--MT-TE	6	8	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0.0868	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH3122_LUNG	1	1	0.1519	FALSE	499	1288	110	792	0	FALSE	ACH-000337
NCIH3122_LUNG	C15orf57--CBX3	5	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	112	76	0.11	0.16	0.0542	0.0976	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH3122_LUNG	0.11	0.16	0.1518	TRUE	267	562	48	632	0	FALSE	ACH-000337
NCIH3122_LUNG	MT-ND6--MT-ND5	7	1	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	2	658	0.8	0.01	0.0759	0.0108	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH3122_LUNG	0.01	0.8	0.0867	FALSE	101	855	57	72	0	FALSE	ACH-000337
NCIH3122_LUNG	MT-TA--MT-TC	5	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0.0976	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH3122_LUNG	1	1	0.1518	FALSE	462	80	0	856	0	FALSE	ACH-000337
NCIH3122_LUNG	MT-ND5--MT-ND6	5	8	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	4987	1	0	0.0542	0.0868	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH3122_LUNG	0	1	0.141	FALSE	26	124	4	93	0	FALSE	ACH-000337
NCIH3122_LUNG	GTF2IRD2--AUTS2	6	3	GTF2IRD2	3428	chr7:74247928:-	AUTS2	32213	chr7:69755354:+	ONLY_REF_SPLICE	YES	34	0	0.21	1	0.0651	0.0325	GTF2IRD2->GTF2I_repeat_domain_containing_2,chr7:74210483-74267847:-,AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+	NCIH3122_LUNG	0.21	1	0.0976	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	MT-ND6--MT-ND5	6	2	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	2282	1	0	0.0651	0.0217	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH3122_LUNG	0	1	0.0868	FALSE	101	855	57	72	0	FALSE	ACH-000337
NCIH3122_LUNG	MT-ND5--MT-ND6	4	9	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.93	0.0434	0.0976	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH3122_LUNG	0.93	1	0.141	FALSE	26	124	4	93	0	FALSE	ACH-000337
NCIH3122_LUNG	RP11-96H19.1--RP11-446N19.1	1	20	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.0108	0.2169	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH3122_LUNG	0.91	1	0.2277	FALSE	192	492	57	212	0	FALSE	ACH-000337
NCIH3122_LUNG	RP11-96H19.1--RP11-446N19.1	1	19	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.0108	0.2061	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH3122_LUNG	0.95	1	0.2169	FALSE	275	511	55	178	0	FALSE	ACH-000337
NCIH3122_LUNG	FAN1--PRAMENP	5	2	FAN1	3046	chr15:31198100:+	PRAMENP	24449	chr22:22380725:-	ONLY_REF_SPLICE	YES	61	0	0.1	1	0.0542	0.0217	FAN1->FANCD2/FANCI-associated_nuclease_1,chr15:31196055-31235311:+,PRAMENP->PRAME_N-terminal-like,_pseudogene,chr22:22345496-22398332:-	NCIH3122_LUNG	0.1	1	0.0759	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	RP11-96H19.1--RP11-446N19.1	2	14	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.89	0.94	0.0217	0.1518	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH3122_LUNG	0.89	0.94	0.1735	FALSE	467	2173	244	435	0	FALSE	ACH-000337
NCIH3122_LUNG	FTH1--ACTG1	5	1	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	7196	3	0	0.67	0.0542	0.0108	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH3122_LUNG	0	0.67	0.065	FALSE	0	0	0	64	0	FALSE	ACH-000337
NCIH3122_LUNG	NPM1P24--SET	5	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	53	1982	0.1	0	0.0542	0.0108	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH3122_LUNG	0	0.1	0.065	FALSE	0	0	0	434	0	FALSE	ACH-000337
NCIH3122_LUNG	NPM1P24--SET	5	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	NO	53	2003	0.1	0	0.0542	0.0108	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH3122_LUNG	0	0.1	0.065	FALSE	0	0	0	434	0	FALSE	ACH-000337
NCIH3122_LUNG	MT-ND6--MT-ND5	4	2	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	4	2353	0.6	0	0.0434	0.0217	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH3122_LUNG	0	0.6	0.0651	FALSE	101	855	57	72	0	FALSE	ACH-000337
NCIH3122_LUNG	AC002055.4--DAGLA	4	1	AC002055.4	4453	chr22:51223721:+	DAGLA	13785	chr11:61487584:+	ONLY_REF_SPLICE	YES	129	2	0.04	0.71	0.0434	0.0108	AC002055.4->chr22:51195376-51239737:+,DAGLA->chr11:61447905-61514473:+,diacylglycerol_lipase_alpha	NCIH3122_LUNG	0.04	0.71	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	MT-ND6--MT-ND5	4	1	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	3399	2189	0	0	0.0434	0.0108	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH3122_LUNG	0	0	0.0542	FALSE	101	855	57	72	0	FALSE	ACH-000337
NCIH3122_LUNG	NRIP1--AF127936.7	2	9	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.39	1	0.0217	0.0976	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH3122_LUNG	0.39	1	0.1193	FALSE	164	806	69	479	0	FALSE	ACH-000337
NCIH3122_LUNG	RP11-114H23.1--RP11-114H23.2	3	5	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	3	0	0.73	1	0.0325	0.0542	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH3122_LUNG	0.73	1	0.0867	FALSE	81	155	12	160	0	FALSE	ACH-000337
NCIH3122_LUNG	RP11-59N23.3--RP11-729I10.2	4	1	RP11-59N23.3	2631	chr12:21913019:+	RP11-729I10.2	7910	chr12:22022516:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.83	0.0434	0.0108	NEIGHBORS[67178],RP11-59N23.3->chr12:21815247-21912966:+,RP11-729I10.2->chr12:21980144-22040891:+	NCIH3122_LUNG	0.83	1	0.0542	FALSE	0	0	0	3	0	FALSE	ACH-000337
NCIH3122_LUNG	C7orf50--LINC00381	3	1	C7orf50	3078	chr7:1166893:-	LINC00381	19655	chr13:75008640:+	ONLY_REF_SPLICE	YES	532	0	0.01	1	0.0325	0.0108	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,LINC00381->chr13:74993310-75009296:+,long_intergenic_non-protein_coding_RNA_381	NCIH3122_LUNG	0.01	1	0.0433	FALSE	0	0	0	1	0	FALSE	ACH-000337
NCIH3122_LUNG	CTC-228N24.2--CTC-228N24.3	3	1	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	0	27	1	0.13	0.0325	0.0108	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	NCIH3122_LUNG	0.13	1	0.0433	TRUE	0	1	0	12	1	TRUE	ACH-000337
NCIH3122_LUNG	RP11-59N23.3--RP11-729I10.2	3	1	RP11-59N23.3	1459	chr12:21815705:+	RP11-729I10.2	7910	chr12:22022516:+	ONLY_REF_SPLICE	YES	14	1	0.22	0.8	0.0325	0.0108	NEIGHBORS[67178],RP11-59N23.3->chr12:21815247-21912966:+,RP11-729I10.2->chr12:21980144-22040891:+	NCIH3122_LUNG	0.22	0.8	0.0433	FALSE	0	2	0	5	0	FALSE	ACH-000337
NCIH3122_LUNG	PRKD1--ARHGAP5	2	3	PRKD1	5311	chr14:30194742:-	ARHGAP5	41139	chr14:32586349:+	ONLY_REF_SPLICE	YES	87	476	0.05	0.01	0.0217	0.0325	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+	NCIH3122_LUNG	0.01	0.05	0.0542	FALSE	0	0	0	1	0	FALSE	ACH-000337
NCIH3122_LUNG	RP11-59N23.3--RP11-729I10.2	1	6	RP11-59N23.3	1459	chr12:21815705:+	RP11-729I10.2	5579	chr12:21980144:+	ONLY_REF_SPLICE	YES	14	0	0.33	1	0.0108	0.0651	NEIGHBORS[67178],RP11-59N23.3->chr12:21815247-21912966:+,RP11-729I10.2->chr12:21980144-22040891:+	NCIH3122_LUNG	0.33	1	0.0759	FALSE	0	2	0	4	0	FALSE	ACH-000337
NCIH3122_LUNG	RP11-114H23.1--RP11-114H23.2	1	5	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0108	0.0542	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH3122_LUNG	0.75	1	0.065	FALSE	5	9	0	20	0	FALSE	ACH-000337
NCIH3122_LUNG	RP11-59N23.3--RP11-729I10.2	1	5	RP11-59N23.3	1459	chr12:21815705:+	RP11-729I10.2	6794	chr12:21984013:+	ONLY_REF_SPLICE	NO	14	0	0.3	1	0.0108	0.0542	NEIGHBORS[67178],RP11-59N23.3->chr12:21815247-21912966:+,RP11-729I10.2->chr12:21980144-22040891:+	NCIH3122_LUNG	0.3	1	0.065	FALSE	0	2	0	3	0	FALSE	ACH-000337
NCIH3122_LUNG	ARHGAP5--AKAP6	2	0	ARHGAP5	1940	chr14:32546259:+	AKAP6	24828	chr14:32902666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	{Klijn_CCL:Lung=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	NCIH3122_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	ARHGAP5--AKAP6	1	4	ARHGAP5	2322	chr14:32546641:+	AKAP6	23388	chr14:32871204:+	ONLY_REF_SPLICE	YES	122	0	0.04	1	0.0108	0.0434	{Klijn_CCL:Lung=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	NCIH3122_LUNG	0.04	1	0.0542	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	GEMIN4--ABR	2	0	GEMIN4	2685	chr17:655373:-	ABR	43546	chr17:916404:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GEMIN4->chr17:647654-657239:-,gem_nuclear_organelle_associated_protein_4,ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	NCIH3122_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	HIF1A--PRKCH	2	0	HIF1A	1327	chr14:62162557:+	PRKCH	48659	chr14:61952220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	NCIH3122_LUNG	1	1	0.0217	TRUE	1	15	1	9	1	TRUE	ACH-000337
NCIH3122_LUNG	ITM2C--NCOA7	2	0	ITM2C	3474	chr2:231738272:+	NCOA7	32645	chr6:126243828:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	ITM2C->chr2:231729354-231743963:+,integral_membrane_protein_2C,NCOA7->chr6:126102307-126252266:+,nuclear_receptor_coactivator_7	NCIH3122_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	MAP7--PERP	2	0	MAP7	1478	chr6:136871480:-	PERP	26553	chr6:138417631:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7,PERP->PERP,_TP53_apoptosis_effector,chr6:138409642-138428648:-	NCIH3122_LUNG	1	1	0.0217	TRUE	0	2	0	1	1	TRUE	ACH-000337
NCIH3122_LUNG	MAPK13--AKT2	2	0	MAPK13	7900	chr6:36106557:+	AKT2	31527	chr19:40744880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	PROTCLUST,MAPK13->Oncogene{Bushman},chr6:36095586-36107842:+,mitogen-activated_protein_kinase_13,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	NCIH3122_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	MAPK8--LRRC1	2	0	MAPK8	1167	chr10:49514864:+	LRRC1	25723	chr6:53706908:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	MAPK8->Oncogene{Bushman},chr10:49514698-49647403:+,mitogen-activated_protein_kinase_8,LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1	NCIH3122_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	RAB30-AS1--AATF	2	0	RAB30-AS1	1637	chr11:82783744:+	AATF	18290	chr17:35376304:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	RAB30-AS1->RAB30_antisense_RNA_1_(head_to_head),chr11:82783108-82817761:+,AATF->Oncogene{Bushman},apoptosis_antagonizing_transcription_factor,chr17:35306175-35414171:+	NCIH3122_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	TPP2--TEX30	2	0	TPP2	2330	chr13:103257271:+	TEX30	41472	chr13:103422436:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	LOCAL_INVERSION:+:-:[86819],TPP2->chr13:103249353-103331521:+,tripeptidyl_peptidase_2,TEX30->chr13:103418340-103426161:-,testis_expressed_30	NCIH3122_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000337
NCIH3122_LUNG	UBE3A--SNRPN	2	0	UBE3A	1493	chr15:25683636:-	SNRPN	29711	chr15:25207261:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1},UBE3A->Oncogene{Bushman},chr15:25582381-25684128:-,ubiquitin_protein_ligase_E3A,SNRPN->chr15:25068794-25223870:+,small_nuclear_ribonucleoprotein_polypeptide_N	NCIH3122_LUNG	1	1	0.0217	TRUE	0	0	0	2	0	TRUE	ACH-000337
NCIH3122_LUNG	MGST1--RP11-424M22.3	1	2	MGST1	11416	chr12:16520399:+	RP11-424M22.3	25672	chr12:16726445:+	ONLY_REF_SPLICE	YES	56	0	0.05	1	0.0108	0.0217	NEIGHBORS_OVERLAP:+:+:[6529],MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,RP11-424M22.3->chr12:16720345-16726874:+	NCIH3122_LUNG	0.05	1	0.0325	FALSE	0	2	0	4	0	FALSE	ACH-000337
NCIH3122_LUNG	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	137	32	0.01	0.06	0.0108	0.0108	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	NCIH3122_LUNG	0.01	0.06	0.0216	FALSE	118	557	29	88	0	FALSE	ACH-000337
NCIH3122_LUNG	FAM135A--SMAP1	1	1	FAM135A	7495	chr6:71162274:+	SMAP1	36801	chr6:71442081:+	ONLY_REF_SPLICE	YES	29	153	0.06	0.01	0.0108	0.0108	FAM135A->chr6:71122644-71270877:+,family_with_sequence_similarity_135_member_A,SMAP1->Oncogene{Bushman},chr6:71377479-71571718:+,small_ArfGAP_1	NCIH3122_LUNG	0.01	0.06	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000337
NCIH3122_LUNG	PDIA6--RPS2	1	1	PDIA6	15326	chr2:10930845:-	RPS2	25752	chr16:2013257:-	ONLY_REF_SPLICE	NO	2044	11335	0	0	0.0108	0.0108	PDIA6->chr2:10923517-10978103:-,protein_disulfide_isomerase_family_A_member_6,RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2	NCIH3122_LUNG	0	0	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000337
NCIH3122_LUNG	PSPH--CCT6A	1	1	PSPH	1291	chr7:56119007:-	CCT6A	18220	chr7:56123317:+	ONLY_REF_SPLICE	YES	100	2385	0.02	0	0.0108	0.0108	LOCAL_INVERSION:-:+:[26],PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	NCIH3122_LUNG	0	0.02	0.0216	FALSE	0	0	0	2	0	FALSE	ACH-000337
NCIH3122_LUNG	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	NO	0	90	1	0.02	0.0108	0.0108	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH3122_LUNG	0.02	1	0.0216	TRUE	465	1949	224	605	0	FALSE	ACH-000337
NCIH3122_LUNG	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0108	0.0108	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH3122_LUNG	1	1	0.0216	TRUE	62	24	1	171	0	FALSE	ACH-000337
NCIH3122_LUNG	VRK2--TMEM248	1	1	VRK2	16257	chr2:58316858:+	TMEM248	30794	chr7:66406835:+	ONLY_REF_SPLICE	YES	105	10	0.02	0.17	0.0108	0.0108	VRK2->chr2:58134786-58387055:+,vaccinia_related_kinase_2,TMEM248->chr7:66386212-66423538:+,transmembrane_protein_248	NCIH3122_LUNG	0.02	0.17	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000337
NCIH3122_LUNG	ZNF292--RNGTT	1	1	ZNF292	2606	chr6:87865477:+	RNGTT	44492	chr6:89324114:-	ONLY_REF_SPLICE	YES	27	76	0.07	0.03	0.0108	0.0108	ZNF292->chr6:87862551-87973914:+,zinc_finger_protein_292,RNGTT->RNA_guanylyltransferase_and_5'-phosphatase,chr6:89319985-89673348:-	NCIH3122_LUNG	0.03	0.07	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000337
KATOIII_STOMACH	CTNNB1--ULK4	106	153	CTNNB1	3896	chr3:41241161:+	ULK4	66859	chr3:41291065:-	ONLY_REF_SPLICE	YES	4931	9	0.05	0.97	1.4155	2.0432	GTEx_v2:{count=8;pct=0.09%;dist=Heart_-_Atrial_Appendage=2,Lung=1,Prostate=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Colon_-_Transverse=1},NEIGHBORS_OVERLAP:+:-:[13497],CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	KATOIII_STOMACH	0.05	0.97	3.4587	FALSE	0	0	0	1	0	FALSE	ACH-000793
KATOIII_STOMACH	FGFR2--ULK4	100	92	FGFR2	4111	chr10:123353223:-	ULK4	80367	chr3:41291065:-	ONLY_REF_SPLICE	YES	10246	9	0.02	0.96	1.3354	1.2286	FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	KATOIII_STOMACH	0.02	0.96	2.564	TRUE	0	0	0	1	0	FALSE	ACH-000793
KATOIII_STOMACH	TIMM23B--LINC00843	100	61	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3354	0.8146	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KATOIII_STOMACH	1	1	2.15	TRUE	508	994	45	981	0	FALSE	ACH-000793
KATOIII_STOMACH	HMCES--MECOM	48	28	HMCES	6733	chr3:129020985:+	MECOM	34511	chr3:168820014:-	ONLY_REF_SPLICE	YES	690	19	0.1	0.8	0.641	0.3739	HMCES->5-hydroxymethylcytosine_(hmC)_binding,_ES_cell-specific,chr3:128997671-129025029:+,MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-	KATOIII_STOMACH	0.1	0.8	1.0149	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	TIMM23--RP11-464F9.1	50	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	458	4	0.11	0.93	0.6677	0.0935	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KATOIII_STOMACH	0.11	0.93	0.7612	TRUE	519	3926	326	965	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-ND6--MT-TE	46	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6143	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KATOIII_STOMACH	1	1	0.6143	FALSE	499	1288	110	792	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-ND6--MT-TE	40	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5342	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KATOIII_STOMACH	1	1	0.5342	FALSE	499	1288	110	792	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-TA--MT-TC	34	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.454	0.0401	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KATOIII_STOMACH	1	1	0.4941	FALSE	462	80	0	856	0	FALSE	ACH-000793
KATOIII_STOMACH	AES--AC005262.3	25	9	AES	2948	chr19:3061158:-	AC005262.3	11996	chr19:3119302:-	ONLY_REF_SPLICE	YES	528	0	0.06	1	0.3339	0.1202	LOCAL_REARRANGEMENT:-:[55558],AES->amino-terminal_enhancer_of_split,chr19:3052908-3063105:-,AC005262.3->chr19:3118663-3119302:-	KATOIII_STOMACH	0.06	1	0.4541	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	MT-TA--MT-TC	26	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3472	0.0134	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KATOIII_STOMACH	1	1	0.3606	FALSE	462	80	0	856	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-ND4--MT-ND4L	25	0	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3339	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KATOIII_STOMACH	1	1	0.3339	FALSE	344	827	44	306	0	FALSE	ACH-000793
KATOIII_STOMACH	AC104389.28--HBE1	17	23	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	90	3	0.31	0.93	0.227	0.3071	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	KATOIII_STOMACH	0.31	0.93	0.5341	TRUE	0	48	0	65	48	FALSE	ACH-000793
KATOIII_STOMACH	AP003900.6--AC008132.1	20	7	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	4	0	0.87	1	0.2671	0.0935	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KATOIII_STOMACH	0.87	1	0.3606	TRUE	0	0	0	25	0	FALSE	ACH-000793
KATOIII_STOMACH	CTNNB1--ULK4	3	59	CTNNB1	3848	chr3:41241113:+	ULK4	66859	chr3:41291065:-	INCL_NON_REF_SPLICE	YES	1051	9	0.06	0.87	0.0401	0.7879	GTEx_v2:{count=8;pct=0.09%;dist=Heart_-_Atrial_Appendage=2,Lung=1,Prostate=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Colon_-_Transverse=1},NEIGHBORS_OVERLAP:+:-:[13497],CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	KATOIII_STOMACH	0.06	0.87	0.828	FALSE	0	0	0	1	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-ND4--MT-ND4L	13	18	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	9	1	0.78	0.97	0.1736	0.2404	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KATOIII_STOMACH	0.78	0.97	0.414	FALSE	344	821	44	306	0	FALSE	ACH-000793
KATOIII_STOMACH	AES--AC005262.3	15	9	AES	2948	chr19:3061158:-	AC005262.3	11999	chr19:3119299:-	INCL_NON_REF_SPLICE	YES	528	0	0.04	1	0.2003	0.1202	LOCAL_REARRANGEMENT:-:[55558],AES->amino-terminal_enhancer_of_split,chr19:3052908-3063105:-,AC005262.3->chr19:3118663-3119302:-	KATOIII_STOMACH	0.04	1	0.3205	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	C15orf57--CBX3	15	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	83	40	0.22	0.38	0.2003	0.1202	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KATOIII_STOMACH	0.22	0.38	0.3205	TRUE	267	562	48	632	0	FALSE	ACH-000793
KATOIII_STOMACH	HMCES--MECOM	10	29	HMCES	6733	chr3:129020985:+	MECOM	33484	chr3:168825740:-	ONLY_REF_SPLICE	YES	690	18	0.05	0.68	0.1335	0.3873	HMCES->5-hydroxymethylcytosine_(hmC)_binding,_ES_cell-specific,chr3:128997671-129025029:+,MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-	KATOIII_STOMACH	0.05	0.68	0.5208	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	NIPA2--POLA1	17	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.227	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	KATOIII_STOMACH	1	1	0.227	TRUE	46	1352	75	139	0	FALSE	ACH-000793
KATOIII_STOMACH	AC104389.28--HBE1	9	29	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	90	0	0.3	1	0.1202	0.3873	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	KATOIII_STOMACH	0.3	1	0.5075	TRUE	0	35	0	55	35	FALSE	ACH-000793
KATOIII_STOMACH	PAFAH1B2--SIK3	13	10	PAFAH1B2	1152	chr11:117015134:+	SIK3	18973	chr11:116827780:-	ONLY_REF_SPLICE	YES	80	32	0.22	0.42	0.1736	0.1335	LOCAL_INVERSION:+:-:[45830],PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,SIK3->Oncogene{Bushman},SIK_family_kinase_3,chr11:116714118-116969153:-	KATOIII_STOMACH	0.22	0.42	0.3071	TRUE	0	1	0	2	0	TRUE	ACH-000793
KATOIII_STOMACH	MT-ND4--MT-ND4L	12	8	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	17341	0	0	1	0.1603	0.1068	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KATOIII_STOMACH	0	1	0.2671	FALSE	328	800	43	304	0	FALSE	ACH-000793
KATOIII_STOMACH	RP11-6N13.1--CTD-2374C24.1	11	10	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1469	0.1335	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	KATOIII_STOMACH	0.95	1	0.2804	TRUE	5	4	0	46	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	13	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1736	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	1	1	0.1736	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-ND6--MT-TE	13	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1736	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KATOIII_STOMACH	1	1	0.1736	FALSE	499	1288	110	792	0	FALSE	ACH-000793
KATOIII_STOMACH	FGFR2--ULK4	2	40	FGFR2	4111	chr10:123353223:-	ULK4	81453	chr3:41288483:-	ONLY_REF_SPLICE	YES	10246	35	0	0.55	0.0267	0.5342	FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	KATOIII_STOMACH	0	0.55	0.5609	TRUE	0	0	0	1	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	9	5	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	8	1	0.64	0.1202	0.0668	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	0.64	1	0.187	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-ND4--MT-ND4L	3	29	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	30	1	0.52	0.97	0.0401	0.3873	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KATOIII_STOMACH	0.52	0.97	0.4274	FALSE	344	826	44	306	0	FALSE	ACH-000793
KATOIII_STOMACH	C15orf57--CBX3	8	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	83	40	0.15	0.27	0.1068	0.0935	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KATOIII_STOMACH	0.15	0.27	0.2003	TRUE	267	562	48	632	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	7	10	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	10	0.77	0.63	0.0935	0.1335	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	0.63	0.77	0.227	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	5	15	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	NO	10	0	0.67	1	0.0668	0.2003	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	0.67	1	0.2671	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	6	10	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	6	10	0.73	0.62	0.0801	0.1335	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	0.62	0.73	0.2136	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	5	12	MT-CO3	1322	chrM:9528:+	MT-ATP6	5065	chrM:8807:+	INCL_NON_REF_SPLICE	YES	8	117	0.68	0.13	0.0668	0.1603	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	0.13	0.68	0.2271	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-ND6--MT-TE	8	0	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1068	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KATOIII_STOMACH	1	1	0.1068	FALSE	499	1288	110	792	0	FALSE	ACH-000793
KATOIII_STOMACH	AP003900.6--AC008132.1	4	12	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	11	0	0.59	1	0.0534	0.1603	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KATOIII_STOMACH	0.59	1	0.2137	TRUE	1	1	0	28	1	FALSE	ACH-000793
KATOIII_STOMACH	HDAC4--ILKAP	6	4	HDAC4	1677	chr2:240322672:-	ILKAP	59806	chr2:239090827:-	ONLY_REF_SPLICE	YES	1	102	0.91	0.09	0.0801	0.0534	HDAC4->Oncogene{Bushman},chr2:239969864-240323348:-,histone_deacetylase_4,ILKAP->ILK_associated_serine/threonine_phosphatase,chr2:239079042-239112370:-	KATOIII_STOMACH	0.09	0.91	0.1335	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	MT-ND6--MT-TE	7	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0935	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KATOIII_STOMACH	1	1	0.0935	FALSE	499	1288	110	792	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-TA--MT-TY	7	0	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0935	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	KATOIII_STOMACH	1	1	0.0935	FALSE	13	214	14	42	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	4	11	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	13	10	0.54	0.6	0.0534	0.1469	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	0.54	0.6	0.2003	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	4	11	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	6	57	0.71	0.21	0.0534	0.1469	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	0.21	0.71	0.2003	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	5	7	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	6	0.92	0.67	0.0668	0.0935	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	0.67	0.92	0.1603	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	AC104389.28--HBE1	6	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0801	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	KATOIII_STOMACH	1	1	0.0801	TRUE	0	16	0	53	13	FALSE	ACH-000793
KATOIII_STOMACH	HSPBP1--GRK5	6	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0801	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KATOIII_STOMACH	1	1	0.0801	TRUE	1	39	0	134	39	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	4	8	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	2	74	0.86	0.14	0.0534	0.1068	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	0.14	0.86	0.1602	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	3	11	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	13	7	0.52	0.67	0.0401	0.1469	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	0.52	0.67	0.187	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-ND4--MT-ND4L	4	7	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1184	0	0.01	1	0.0534	0.0935	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KATOIII_STOMACH	0.01	1	0.1469	FALSE	344	827	44	306	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-TA--MT-TC	5	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0668	0.0401	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KATOIII_STOMACH	1	1	0.1069	FALSE	462	80	0	856	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	5	0	MT-CO3	1192	chrM:9398:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0668	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	1	1	0.0668	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-ND4--MT-ND4L	5	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0668	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KATOIII_STOMACH	1	1	0.0668	FALSE	344	821	44	306	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-ND4--MT-ND4L	3	8	MT-ND4	1195	chrM:10954:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	45	0	0.2	1	0.0401	0.1068	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KATOIII_STOMACH	0.2	1	0.1469	FALSE	344	826	44	306	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-TA--MT-TC	4	3	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0.0401	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KATOIII_STOMACH	1	1	0.0935	FALSE	462	80	0	856	0	FALSE	ACH-000793
KATOIII_STOMACH	ADAP1--SUN1	4	2	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	893	825	0.01	0.01	0.0534	0.0267	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	KATOIII_STOMACH	0.01	0.01	0.0801	FALSE	16	22	0	27	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	3	6	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	0	13	1	0.41	0.0401	0.0801	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	0.41	1	0.1202	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-ND4--MT-ND4L	4	2	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1369	0	0	1	0.0534	0.0267	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KATOIII_STOMACH	0	1	0.0801	FALSE	344	827	44	306	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-ND4--MT-ND4L	4	2	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	52	0	0.1	1	0.0534	0.0267	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KATOIII_STOMACH	0.1	1	0.0801	FALSE	344	826	44	306	0	FALSE	ACH-000793
KATOIII_STOMACH	AP003900.6--AC008132.1	3	5	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	4	0	0.67	1	0.0401	0.0668	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KATOIII_STOMACH	0.67	1	0.1069	TRUE	0	0	0	16	0	TRUE	ACH-000793
KATOIII_STOMACH	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KATOIII_STOMACH	1	1	0.0534	FALSE	183	104	9	328	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-ND1--MT-RNR2	4	0	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KATOIII_STOMACH	1	1	0.0534	FALSE	114	26	4	85	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-ND4--MT-ND4L	4	0	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KATOIII_STOMACH	1	1	0.0534	FALSE	344	826	44	306	0	FALSE	ACH-000793
KATOIII_STOMACH	FGFR2--ULK4	1	11	FGFR2	1497	chr10:123357476:-	ULK4	80367	chr3:41291065:-	ONLY_REF_SPLICE	YES	6527	9	0	0.57	0.0134	0.1469	FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	KATOIII_STOMACH	0	0.57	0.1603	TRUE	0	0	0	1	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	3	3	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	1	2	0.86	0.75	0.0401	0.0401	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	0.75	0.86	0.0802	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	3	3	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	2	0.75	0.75	0.0401	0.0401	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	0.75	0.75	0.0802	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	RP11-307P5.1--SASH1	3	3	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	10	1	0.38	0.0401	0.0401	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	KATOIII_STOMACH	0.38	1	0.0802	TRUE	0	2	0	37	2	FALSE	ACH-000793
KATOIII_STOMACH	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0401	0.0401	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KATOIII_STOMACH	0.86	1	0.0802	FALSE	407	2205	196	549	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-ND4--MT-ND4L	3	2	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	49	0	0.09	1	0.0401	0.0267	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KATOIII_STOMACH	0.09	1	0.0668	FALSE	344	826	44	306	0	FALSE	ACH-000793
KATOIII_STOMACH	NRIP1--AF127936.7	3	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0401	0.0267	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KATOIII_STOMACH	1	1	0.0668	FALSE	292	1546	117	613	0	FALSE	ACH-000793
KATOIII_STOMACH	AP003900.6--AC008132.1	3	1	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	4	15	0.5	0.21	0.0401	0.0134	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KATOIII_STOMACH	0.21	0.5	0.0535	TRUE	0	0	0	13	0	TRUE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	3	1	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	6	1	0.4	0.8	0.0401	0.0134	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	0.4	0.8	0.0535	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	3	1	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	11	1	0.27	0.8	0.0401	0.0134	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	0.27	0.8	0.0535	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-ND6--MT-TE	3	1	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.57	1	0.0401	0.0134	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KATOIII_STOMACH	0.57	1	0.0535	FALSE	499	1288	110	792	0	FALSE	ACH-000793
KATOIII_STOMACH	SCARB1--UBC	3	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	64	63	0.06	0.06	0.0401	0.0134	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	KATOIII_STOMACH	0.06	0.06	0.0535	TRUE	55	66	6	101	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	3	0	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	1	1	0.0401	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	1	1	0.0401	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KATOIII_STOMACH	1	1	0.0401	FALSE	189	492	56	216	0	FALSE	ACH-000793
KATOIII_STOMACH	MT-TA--MT-TY	3	0	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	KATOIII_STOMACH	1	1	0.0401	FALSE	13	214	14	42	0	FALSE	ACH-000793
KATOIII_STOMACH	RP11-6N13.1--CTD-2374C24.1	1	8	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	NO	1	0	0.9	1	0.0134	0.1068	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	KATOIII_STOMACH	0.9	1	0.1202	TRUE	5	12	0	42	0	FALSE	ACH-000793
KATOIII_STOMACH	RP11-6N13.1--CTD-2374C24.1	1	7	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	YES	1	1	0.89	0.89	0.0134	0.0935	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	KATOIII_STOMACH	0.89	0.89	0.1069	TRUE	1	1	0	17	1	FALSE	ACH-000793
KATOIII_STOMACH	HDAC4--ILKAP	2	1	HDAC4	1677	chr2:240322672:-	ILKAP	61201	chr2:239082294:-	ONLY_REF_SPLICE	NO	1	79	0.75	0.04	0.0267	0.0134	HDAC4->Oncogene{Bushman},chr2:239969864-240323348:-,histone_deacetylase_4,ILKAP->ILK_associated_serine/threonine_phosphatase,chr2:239079042-239112370:-	KATOIII_STOMACH	0.04	0.75	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	2	1	0.6	0.0267	0.0134	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KATOIII_STOMACH	0.6	1	0.0401	TRUE	458	1351	185	561	0	FALSE	ACH-000793
KATOIII_STOMACH	RP11-6N13.1--CTD-2374C24.1	1	5	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	20885	chr5:104311586:-	ONLY_REF_SPLICE	YES	1	3	0.86	0.67	0.0134	0.0668	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	KATOIII_STOMACH	0.67	0.86	0.0802	TRUE	1	2	0	8	1	FALSE	ACH-000793
KATOIII_STOMACH	AZIN1--RABL6	2	0	AZIN1	5359	chr8:103876035:-	RABL6	27470	chr9:139717977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-,RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	C22orf34--OSER1	2	0	C22orf34	1138	chr22:50051053:-	OSER1	22519	chr20:42835638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	C22orf34->chr22:49808176-50051190:-,chromosome_22_open_reading_frame_34,OSER1->chr20:42825136-42839431:-,oxidative_stress_responsive_serine_rich_1	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	CDH3--FIS1	2	0	CDH3	9372	chr16:68716390:+	FIS1	24786	chr7:100887420:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	CDH3->cadherin_3,chr16:68670092-68756519:+,FIS1->chr7:100882739-100895597:-,fission,_mitochondrial_1	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	DEF6--SNX5	2	0	DEF6	1135	chr6:35265729:+	SNX5	16949	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	DEF6->DEF6,_guanine_nucleotide_exchange_factor,chr6:35265595-35289548:+,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	EDF1--SAPCD2	2	0	EDF1	3072	chr9:139757358:-	SAPCD2	8559	chr9:139960826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,SAPCD2->chr9:139956581-139965040:-,suppressor_APC_domain_containing_2	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	2	0	TRUE	ACH-000793
KATOIII_STOMACH	HDAC4--ILKAP	1	4	HDAC4	1677	chr2:240322672:-	ILKAP	58718	chr2:239092381:-	ONLY_REF_SPLICE	YES	1	140	0.83	0.03	0.0134	0.0534	HDAC4->Oncogene{Bushman},chr2:239969864-240323348:-,histone_deacetylase_4,ILKAP->ILK_associated_serine/threonine_phosphatase,chr2:239079042-239112370:-	KATOIII_STOMACH	0.03	0.83	0.0668	TRUE	0	0	0	1	0	FALSE	ACH-000793
KATOIII_STOMACH	HNRNPA2B1--EDEM1	2	0	HNRNPA2B1	1958	chr7:26240192:-	EDEM1	17628	chr3:5236894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,EDEM1->ER_degradation_enhancing_alpha-mannosidase_like_protein_1,chr3:5229331-5261642:+	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	NELFCD--GGA2	2	0	NELFCD	5710	chr20:57564695:+	GGA2	33907	chr16:23478099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	NELFCD->chr20:57556263-57570188:+,negative_elongation_factor_complex_member_C/D,GGA2->chr16:23474863-23533316:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_2	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	NRIP1--AF127936.7	1	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	10	0	0.33	1	0.0134	0.0534	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KATOIII_STOMACH	0.33	1	0.0668	FALSE	164	806	69	479	0	FALSE	ACH-000793
KATOIII_STOMACH	PCNP--PPP2CB	2	0	PCNP	1185	chr3:101293123:+	PPP2CB	15938	chr8:30657271:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	PCNP->PEST_proteolytic_signal_containing_nuclear_protein,chr3:101292939-101313281:+,PPP2CB->chr8:30631973-30671830:-,protein_phosphatase_2_catalytic_subunit_beta	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	RCC1--SNX5	2	0	RCC1	2175	chr1:28834672:+	SNX5	23224	chr20:17937681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	2	0	TRUE	ACH-000793
KATOIII_STOMACH	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KATOIII_STOMACH	1	1	0.0267	FALSE	16	356	14	466	0	FALSE	ACH-000793
KATOIII_STOMACH	SRRD--GSTT2	1	4	SRRD	3771	chr22:26884454:+	GSTT2	13187	chr22:24323139:+	ONLY_REF_SPLICE	YES	81	22	0.06	0.19	0.0134	0.0534	SRRD->SRR1_domain_containing,chr22:26879843-26890624:+,GSTT2->chr22:24322339-24326106:+,glutathione_S-transferase_theta_2_(gene/pseudogene)	KATOIII_STOMACH	0.06	0.19	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	TFRC--AVL9	2	0	TFRC	19706	chr3:195780289:-	AVL9	47870	chr7:32612811:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor,AVL9->AVL9_cell_migration_associated,chr7:32535038-33078516:+	KATOIII_STOMACH	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	NRIP1--AF127936.7	1	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.36	1	0.0134	0.0401	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KATOIII_STOMACH	0.36	1	0.0535	FALSE	125	705	46	456	0	FALSE	ACH-000793
KATOIII_STOMACH	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0134	0.0401	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KATOIII_STOMACH	0.8	1	0.0535	FALSE	275	511	55	178	0	FALSE	ACH-000793
KATOIII_STOMACH	CTD-2152M20.2--GOLPH3	1	2	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	21	1	0.12	0.0134	0.0267	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	KATOIII_STOMACH	0.12	1	0.0401	TRUE	10	26	2	24	0	FALSE	ACH-000793
KATOIII_STOMACH	RP11-114H23.1--RP11-114H23.2	1	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0134	0.0267	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	KATOIII_STOMACH	0.75	1	0.0401	FALSE	81	155	12	160	0	FALSE	ACH-000793
KATOIII_STOMACH	CAPZA2--NSDHL	1	1	CAPZA2	6031	chr7:116520201:+	NSDHL	28272	chrX:152018809:+	ONLY_REF_SPLICE	YES	291	327	0.01	0.01	0.0134	0.0134	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,NSDHL->NAD(P)_dependent_steroid_dehydrogenase-like,chrX:151999511-152038273:+	KATOIII_STOMACH	0.01	0.01	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000793
KATOIII_STOMACH	HERC1--USP3-AS1	1	1	HERC1	1121	chr15:64126021:-	USP3-AS1	94155	chr15:63881299:-	ONLY_REF_SPLICE	NO	6	2	0.25	0.5	0.0134	0.0134	NEIGHBORS[7029],HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,USP3-AS1->USP3_antisense_RNA_1,chr15:63836446-63893788:-	KATOIII_STOMACH	0.25	0.5	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000793
KATOIII_STOMACH	HERC1--USP3-AS1	1	1	HERC1	1116	chr15:64126026:-	USP3-AS1	94155	chr15:63881299:-	ONLY_REF_SPLICE	YES	4	2	0.33	0.5	0.0134	0.0134	NEIGHBORS[7029],HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,USP3-AS1->USP3_antisense_RNA_1,chr15:63836446-63893788:-	KATOIII_STOMACH	0.33	0.5	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000793
KATOIII_STOMACH	LRPAP1--DOK7	1	1	LRPAP1	5933	chr4:3519761:-	DOK7	29054	chr4:3498547:+	ONLY_REF_SPLICE	YES	687	3	0	0.4	0.0134	0.0134	LOCAL_INVERSION:-:+:[4903],LRPAP1->LDL_receptor_related_protein_associated_protein_1,chr4:3508103-3534286:-,DOK7->chr4:3465033-3503200:+,docking_protein_7	KATOIII_STOMACH	0	0.4	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000793
KATOIII_STOMACH	RP11-307P5.1--SASH1	1	1	RP11-307P5.1	6659	chr6:148268655:+	SASH1	16613	chr6:148789681:+	ONLY_REF_SPLICE	YES	0	17	1	0.11	0.0134	0.0134	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	KATOIII_STOMACH	0.11	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000793
KATOIII_STOMACH	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	6	1	0.25	0.0134	0.0134	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KATOIII_STOMACH	0.25	1	0.0268	TRUE	465	1949	224	605	0	FALSE	ACH-000793
KATOIII_STOMACH	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0134	0.0134	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KATOIII_STOMACH	0.67	1	0.0268	FALSE	515	4851	409	746	0	FALSE	ACH-000793
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--PARGP1	11	2	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2194	0.0399	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2593	TRUE	393	2105	140	19	0	FALSE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17A	10	5	KANSL1	9741	chr17:44171926:-	ARL17A	34099	chr17:44648235:-	ONLY_REF_SPLICE	YES	4	6	0.79	0.71	0.1994	0.0997	GTEx_FI:{Brain=[count:13=pct:2.0],Heart=[count:9=pct:3.6],Esophagus=[count:6=pct:1.5],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:3=pct:1.0],Pancreas=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Stomach=[count:2=pct:2.2],Liver=[count:2=pct:1.7],Blood=[count:2=pct:1.1],Adrenal_Gland=[count:1=pct:1.2],Testis=[count:1=pct:1.0],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Muscle=[count:1=pct:0.4],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8]},GTEx_v2:{count=18;pct=0.21%;dist=Breast_-_Mammary_Tissue=2,Adipose_-_Visceral_(Omentum)=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Tibial=1,Ovary=1,Minor_Salivary_Gland=1,Kidney_-_Cortex=1,Thyroid=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Whole_Blood=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1},KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17A->ADP_ribosylation_factor_like_GTPase_17A,chr17:44594068-44657088:-	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.79	0.2991	TRUE	40	148	9	1	0	FALSE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ARL6IP4	8	0	PTMA	6054	chr2:232576687:+	ARL6IP4	12315	chr12:123466303:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1595	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ARL6IP4->ADP_ribosylation_factor_like_GTPase_6_interacting_protein_4,chr12:123464607-123467456:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1595	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	7	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1396	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1396	TRUE	0	0	0	518	0	FALSE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	6	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1197	0.0399	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1596	TRUE	477	1352	189	275	0	FALSE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTHFR--GAPDH	4	0	MTHFR	16597	chr1:11847561:-	GAPDH	24780	chr12:6646518:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0798	0	MTHFR->Oncogene{Bushman},chr1:11845780-11866977:-,methylenetetrahydrofolate_reductase_(NAD(P)H),GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-290D2.6--MT-ND4	4	0	RP11-290D2.6	1126	chr13:45914299:+	MT-ND4	5315	chrM:10929:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0798	0	RP11-290D2.6->chr13:45914174-45915318:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0798	FALSE	0	0	0	1	0	FALSE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD22--EEF1G	3	0	CD22	11404	chr19:35832850:+	EEF1G	20356	chr11:62340093:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	CD22->CD22_molecule,chr19:35810164-35838258:+,EEF1G->chr11:62327073-62342401:-,eukaryotic_translation_elongation_factor_1_gamma	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HN1L--RAB11FIP3	3	0	HN1L	1101	chr16:1728357:+	RAB11FIP3	16870	chr16:511404:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0598	0	HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like,RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPSNAP1--MT-ATP6	3	0	NIPSNAP1	10378	chr22:29951879:-	MT-ATP6	14580	chrM:8646:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	NIPSNAP1->chr22:29950797-29977326:-,nipsnap_homolog_1_(C._elegans),MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0598	FALSE	0	0	0	1	0	FALSE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ODF2--PHGDH	3	0	ODF2	18644	chr9:131256898:+	PHGDH	30396	chr1:120254663:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	ODF2->chr9:131217465-131263571:+,outer_dense_fiber_of_sperm_tails_2,PHGDH->chr1:120202421-120286838:+,phosphoglycerate_dehydrogenase	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD9--WDR45B	3	0	SMAD9	4304	chr13:37446997:-	WDR45B	29422	chr17:80572866:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	SMAD9->SMAD_family_member_9,chr13:37418968-37494902:-,WDR45B->WD_repeat_domain_45B,chr17:80572438-80606429:-	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMX4--CCT7	3	0	TMX4	10920	chr20:7963052:-	CCT7	31819	chr2:73478378:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	TMX4->chr20:7957995-8000476:-,thioredoxin_related_transmembrane_protein_4,CCT7->chaperonin_containing_TCP1_subunit_7,chr2:73460548-73480149:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAF2--USF2	3	0	TRAF2	8034	chr9:139794914:+	USF2	29643	chr19:35770194:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	TRAF2->TNF_receptor_associated_factor_2,chr9:139776364-139821059:+,USF2->chr19:35759881-35770724:+,upstream_transcription_factor_2,_c-fos_interacting	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBXN1--RAB8A	3	0	UBXN1	2058	chr11:62445510:-	RAB8A	16429	chr19:16243606:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	UBXN1->UBX_domain_protein_1,chr11:62443970-62446567:-,RAB8A->Oncogene{Bushman},RAB8A,_member_RAS_oncogene_family,chr19:16222439-16245044:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCLAF1--RANBP9	2	0	BCLAF1	14856	chr6:136588167:-	RANBP9	30591	chr6:13644961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	BCLAF1->BCL2_associated_transcription_factor_1,chr6:136578001-136610989:-,RANBP9->RAN_binding_protein_9,chr6:13621730-13711796:-	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT2--RBM26	2	0	CNOT2	3472	chr12:70672054:+	RBM26	52821	chr13:79916966:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,RBM26->RNA_binding_motif_protein_26,chr13:79885962-79980612:-	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-432M15.3--SNX2	2	0	CTC-432M15.3	7707	chr5:130883740:-	SNX2	39746	chr5:122130961:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	CTC-432M15.3->chr5:130761584-131132676:-,SNX2->chr5:122110691-122165803:+,sorting_nexin_2	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--ITGB3BP	2	0	DANCR	1530	chr4:53579126:+	ITGB3BP	18619	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	9	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHX33--RP11-84A14.4	2	0	DHX33	2651	chr17:5366849:-	RP11-84A14.4	20190	chr1:10009696:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	DHX33->DEAH-box_helicase_33,chr17:5344232-5372380:-,RP11-84A14.4->chr1:10002981-10010032:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LEF1--WSB1	2	0	LEF1	5980	chr4:109084724:-	WSB1	32277	chr17:25636126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	LEF1->Oncogene{Bushman},chr4:108968701-109090112:-,lymphoid_enhancer_binding_factor_1,WSB1->WD_repeat_and_SOCS_box_containing_1,chr17:25621102-25640657:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NAP1L1--OSER1	2	0	NAP1L1	1467	chr12:76478347:-	OSER1	26571	chr20:42835638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1,OSER1->chr20:42825136-42839431:-,oxidative_stress_responsive_serine_rich_1	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKDC--SRSF1	2	0	PRKDC	26650	chr8:48812933:-	SRSF1	91050	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNASEH1--SRSF5	2	0	RNASEH1	1484	chr2:3605723:-	SRSF5	18249	chr14:70237184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	RNASEH1->chr2:3592383-3606206:-,ribonuclease_H1,SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEC31A--MPPE1	2	0	SEC31A	3528	chr4:83819142:-	MPPE1	44671	chr18:11906308:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-,MPPE1->Oncogene{Bushman},chr18:11882621-11909222:-,metallophosphoesterase_1	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG1--FANCD2	2	0	SNHG1	2396	chr11:62621991:-	FANCD2	45315	chr3:10136884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	SNHG1->chr11:62619460-62623386:-,small_nucleolar_RNA_host_gene_1,FANCD2->ArcherDX_panel,Fanconi_anemia_complementation_group_D2,FoundationOne_panel,Oncogene{Bushman},chr3:10068098-10143614:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPOP--GNAS	2	0	SPOP	1302	chr17:47755295:-	GNAS	39022	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	1	0	0	2	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THADA--DAZAP1	2	0	THADA	1400	chr2:43822786:-	DAZAP1	64427	chr19:1416456:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000660
SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRSF1--MTIF3	1	1	GRSF1	5201	chr4:71698024:-	MTIF3	25422	chr13:28010030:-	ONLY_REF_SPLICE	NO	43	4	0.04	0.33	0.0199	0.0199	GRSF1->G-rich_RNA_sequence_binding_factor_1,chr4:71681499-71705662:-,MTIF3->chr13:28009776-28024739:-,mitochondrial_translational_initiation_factor_3	SUDHL5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.33	0.0398	TRUE	0	0	0	1	0	TRUE	ACH-000660
SNU1_STOMACH	CECR7--AC008132.1	356	45	CECR7	1775	chr22:17518234:+	AC008132.1	13601	chr22:18723545:+	ONLY_REF_SPLICE	YES	9	0	0.98	1	3.2997	0.4171	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	SNU1_STOMACH	0.98	1	3.7168	TRUE	0	0	0	5	0	TRUE	ACH-000932
SNU1_STOMACH	SLC38A2--PTMA	248	2	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	1116	0	0.18	1	2.2987	0.0185	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SNU1_STOMACH	0.18	1	2.3172	TRUE	0	0	0	10	0	TRUE	ACH-000932
SNU1_STOMACH	PTMA--PTMS	212	6	PTMA	6054	chr2:232576687:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	12665	1021	0.02	0.18	1.965	0.0556	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	SNU1_STOMACH	0.02	0.18	2.0206	TRUE	0	0	0	16	0	FALSE	ACH-000932
SNU1_STOMACH	TIMM23B--LINC00843	127	57	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.1771	0.5283	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU1_STOMACH	0.99	1	1.7054	TRUE	508	994	45	981	0	FALSE	ACH-000932
SNU1_STOMACH	TIMM23--RP11-464F9.1	79	13	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	548	5	0.14	0.95	0.7322	0.1205	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU1_STOMACH	0.14	0.95	0.8527	TRUE	519	3926	326	965	0	FALSE	ACH-000932
SNU1_STOMACH	FBLN2--MT-CO1	34	20	FBLN2	10496	chr3:13655634:+	MT-CO1	26175	chrM:5916:+	INCL_NON_REF_SPLICE	YES	3408	0	0.02	1	0.3151	0.1854	FBLN2->chr3:13573824-13679922:+,fibulin_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1_STOMACH	0.02	1	0.5005	FALSE	0	0	0	7	0	FALSE	ACH-000932
SNU1_STOMACH	ZNF654--HMGB2	39	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3615	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU1_STOMACH	1	1	0.3615	TRUE	0	0	0	518	0	FALSE	ACH-000932
SNU1_STOMACH	PTMA--PTMS	38	3	PTMA	6054	chr2:232576687:+	PTMS	13973	chr12:6879338:+	INCL_NON_REF_SPLICE	YES	12665	1092	0	0.04	0.3522	0.0278	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	SNU1_STOMACH	0	0.04	0.38	TRUE	0	0	0	16	0	FALSE	ACH-000932
SNU1_STOMACH	CECR7--AC008132.1	28	20	CECR7	1775	chr22:17518234:+	AC008132.1	16240	chr22:18732023:+	ONLY_REF_SPLICE	YES	9	40	0.84	0.55	0.2595	0.1854	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	SNU1_STOMACH	0.55	0.84	0.4449	TRUE	0	0	0	5	0	TRUE	ACH-000932
SNU1_STOMACH	HSPBP1--ZSWIM6	32	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2966	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	SNU1_STOMACH	1	1	0.2966	TRUE	47	32	1	28	0	FALSE	ACH-000932
SNU1_STOMACH	CECR7--AC008132.1	24	30	CECR7	1775	chr22:17518234:+	AC008132.1	15153	chr22:18727043:+	ONLY_REF_SPLICE	YES	9	3	0.86	0.95	0.2225	0.2781	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	SNU1_STOMACH	0.86	0.95	0.5006	TRUE	0	0	0	5	0	TRUE	ACH-000932
SNU1_STOMACH	AP003900.6--AP000345.1	29	6	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	40	0	0.47	1	0.2688	0.0556	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	SNU1_STOMACH	0.47	1	0.3244	TRUE	0	8	0	37	1	FALSE	ACH-000932
SNU1_STOMACH	RP11-680G10.1--GSE1	25	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	140	1	0.19	0.2317	0.0649	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1_STOMACH	0.19	1	0.2966	TRUE	465	1949	224	605	0	FALSE	ACH-000932
SNU1_STOMACH	MT-TA--MT-TC	26	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.241	0.0185	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1_STOMACH	1	1	0.2595	FALSE	462	80	0	856	0	FALSE	ACH-000932
SNU1_STOMACH	C15orf57--CBX3	19	28	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	111	55	0.3	0.46	0.1761	0.2595	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1_STOMACH	0.3	0.46	0.4356	TRUE	267	562	48	632	0	FALSE	ACH-000932
SNU1_STOMACH	PTMA--PTMS	20	5	PTMA	6060	chr2:232576693:+	PTMS	13789	chr12:6879154:+	INCL_NON_REF_SPLICE	YES	13231	1225	0	0.02	0.1854	0.0463	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	SNU1_STOMACH	0	0.02	0.2317	TRUE	0	0	0	16	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ND4L	4	67	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	8	0	0.9	1	0.0371	0.621	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1_STOMACH	0.9	1	0.6581	FALSE	344	826	44	306	0	FALSE	ACH-000932
SNU1_STOMACH	AP000525.9--LA16c-60G3.6	19	4	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	15	0	0.61	1	0.1761	0.0371	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SNU1_STOMACH	0.61	1	0.2132	TRUE	0	42	0	133	42	FALSE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ND4L	4	62	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	15	0	0.81	1	0.0371	0.5747	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1_STOMACH	0.81	1	0.6118	FALSE	344	826	44	306	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ND4L	5	56	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	7	0	0.9	1	0.0463	0.5191	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1_STOMACH	0.9	1	0.5654	FALSE	344	821	44	306	0	FALSE	ACH-000932
SNU1_STOMACH	PKM--PPIA	16	12	PKM	16758	chr15:72494872:-	PPIA	23273	chr7:44836291:+	INCL_NON_REF_SPLICE	YES	13549	0	0	1	0.1483	0.1112	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	SNU1_STOMACH	0	1	0.2595	TRUE	0	0	0	18	0	FALSE	ACH-000932
SNU1_STOMACH	AL589743.1--RP11-536C10.17	18	1	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	19	0	0.5	1	0.1668	0.0093	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	SNU1_STOMACH	0.5	1	0.1761	TRUE	0	33	0	45	33	FALSE	ACH-000932
SNU1_STOMACH	PTMA--PTMS	15	2	PTMA	6024	chr2:232576657:+	PTMS	13750	chr12:6879115:+	INCL_NON_REF_SPLICE	YES	12009	997	0	0.02	0.139	0.0185	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	SNU1_STOMACH	0	0.02	0.1575	TRUE	0	0	0	16	0	FALSE	ACH-000932
SNU1_STOMACH	RP11-680G10.1--GSE1	13	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	8	1	0.73	0.1205	0.0834	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1_STOMACH	0.73	1	0.2039	TRUE	458	1351	185	561	0	FALSE	ACH-000932
SNU1_STOMACH	PTMA--PTMS	14	2	PTMA	6002	chr2:232576635:+	PTMS	13963	chr12:6879328:+	INCL_NON_REF_SPLICE	YES	12333	1289	0	0.01	0.1298	0.0185	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	SNU1_STOMACH	0	0.01	0.1483	TRUE	0	0	0	16	0	FALSE	ACH-000932
SNU1_STOMACH	C15orf57--CBX3	7	24	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	111	55	0.22	0.36	0.0649	0.2225	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1_STOMACH	0.22	0.36	0.2874	TRUE	267	562	48	632	0	FALSE	ACH-000932
SNU1_STOMACH	HSP90AB1--MT-RNR2	13	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1205	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1_STOMACH	1	1	0.1205	FALSE	13	9	0	364	0	FALSE	ACH-000932
SNU1_STOMACH	RPL18--TMSB4X	12	3	RPL18	3813	chr19:49119981:-	TMSB4X	8221	chrX:12993238:+	INCL_NON_REF_SPLICE	YES	5569	0	0	1	0.1112	0.0278	RPL18->chr19:49118585-49122793:-,ribosomal_protein_L18,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SNU1_STOMACH	0	1	0.139	TRUE	0	0	0	4	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ND5--MT-CO2	11	6	MT-ND5	2247	chrM:13583:+	MT-CO2	6057	chrM:7830:+	INCL_NON_REF_SPLICE	NO	4003	19862	0	0	0.102	0.0556	LOCAL_REARRANGEMENT:+:[4068],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU1_STOMACH	0	0	0.1576	FALSE	7	5	0	9	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ATP6--MT-RNR2	11	4	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	11882	0	0	1	0.102	0.0371	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1_STOMACH	0	1	0.1391	FALSE	63	17	1	58	0	FALSE	ACH-000932
SNU1_STOMACH	RP11-123O10.4--GRIP1	11	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.102	0.0278	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU1_STOMACH	1	1	0.1298	FALSE	416	2512	207	587	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ATP6--MT-CO1	10	5	MT-ATP6	1153	chrM:8679:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	14437	23161	0	0	0.0927	0.0463	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1_STOMACH	0	0	0.139	FALSE	183	104	9	328	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ATP6--MT-RNR2	10	5	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	14438	12544	0	0	0.0927	0.0463	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1_STOMACH	0	0	0.139	FALSE	63	17	1	58	0	FALSE	ACH-000932
SNU1_STOMACH	RP11-114H23.1--RP11-114H23.2	9	8	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0834	0.0742	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU1_STOMACH	0.94	1	0.1576	FALSE	81	155	12	160	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ND4L	4	27	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	6821	0	0	1	0.0371	0.2503	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1_STOMACH	0	1	0.2874	FALSE	344	827	44	306	0	FALSE	ACH-000932
SNU1_STOMACH	PTMA--PTMS	10	2	PTMA	6002	chr2:232576635:+	PTMS	13746	chr12:6879111:+	INCL_NON_REF_SPLICE	YES	12333	916	0	0.01	0.0927	0.0185	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	SNU1_STOMACH	0	0.01	0.1112	TRUE	0	0	0	16	0	FALSE	ACH-000932
SNU1_STOMACH	CECR7--AC008132.1	2	33	CECR7	1775	chr22:17518234:+	AC008132.1	14128	chr22:18724072:+	ONLY_REF_SPLICE	YES	9	0	0.8	1	0.0185	0.3059	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	SNU1_STOMACH	0.8	1	0.3244	TRUE	0	0	0	5	0	TRUE	ACH-000932
SNU1_STOMACH	CALM3--MT-ND4L	8	7	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2269	0	0.01	1	0.0742	0.0649	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1_STOMACH	0.01	1	0.1391	FALSE	1	1	0	107	0	FALSE	ACH-000932
SNU1_STOMACH	PTMA--PTMS	9	3	PTMA	6054	chr2:232576687:+	PTMS	13976	chr12:6879341:+	INCL_NON_REF_SPLICE	YES	12665	1039	0	0.01	0.0834	0.0278	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	SNU1_STOMACH	0	0.01	0.1112	TRUE	0	0	0	16	0	FALSE	ACH-000932
SNU1_STOMACH	AP000350.4--PKM	7	10	AP000350.4	3774	chr22:24236611:-	PKM	7428	chr15:72523509:-	INCL_NON_REF_SPLICE	YES	0	72	1	0.19	0.0649	0.0927	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	SNU1_STOMACH	0.19	1	0.1576	TRUE	0	0	0	14	0	TRUE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ATP8	9	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	10494	6	0	0.62	0.0834	0.0093	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1_STOMACH	0	0.62	0.0927	FALSE	230	193	14	283	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ND4L	5	17	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	46	0	0.32	1	0.0463	0.1576	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1_STOMACH	0.32	1	0.2039	FALSE	344	826	44	306	0	FALSE	ACH-000932
SNU1_STOMACH	PCBP2--MTND2P28	8	5	PCBP2	11835	chr12:53856343:+	MTND2P28	25766	chr1:565066:+	INCL_NON_REF_SPLICE	YES	3321	0	0	1	0.0742	0.0463	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SNU1_STOMACH	0	1	0.1205	TRUE	0	0	0	9	0	FALSE	ACH-000932
SNU1_STOMACH	AP003900.6--AP000345.1	8	3	AP003900.6	2187	chr21:11172043:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	20	0	0.35	1	0.0742	0.0278	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	SNU1_STOMACH	0.35	1	0.102	TRUE	1	2	0	16	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ATP6--MT-RNR2	4	19	MT-ATP6	1400	chrM:8926:+	MT-RNR2	4726	chrM:1715:+	INCL_NON_REF_SPLICE	YES	14971	0	0	1	0.0371	0.1761	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1_STOMACH	0	1	0.2132	FALSE	63	17	1	58	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ND4L	3	22	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.2039	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1_STOMACH	1	1	0.2317	FALSE	344	821	44	306	0	FALSE	ACH-000932
SNU1_STOMACH	AC074363.1--B3GALT1	1	29	AC074363.1	2265	chr2:168346787:+	B3GALT1	6463	chr2:168675182:+	ONLY_REF_SPLICE	NO	4	0	0.88	1	0.0093	0.2688	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	SNU1_STOMACH	0.88	1	0.2781	TRUE	0	4	2	6	4	TRUE	ACH-000932
SNU1_STOMACH	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0742	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1_STOMACH	1	1	0.0742	FALSE	13	9	0	364	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ND4L	3	19	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6821	0	0	1	0.0278	0.1761	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1_STOMACH	0	1	0.2039	FALSE	344	827	44	306	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ATP8	6	6	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	16786	0	0	1	0.0556	0.0556	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1_STOMACH	0	1	0.1112	FALSE	231	217	16	283	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ATP8	3	18	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	4156	0	0.01	1	0.0278	0.1668	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1_STOMACH	0.01	1	0.1946	FALSE	222	212	16	282	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ND4L	3	18	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	839	0	0.02	1	0.0278	0.1668	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1_STOMACH	0.02	1	0.1946	FALSE	344	827	44	306	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ATP8	7	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	10494	8	0	0.5	0.0649	0.0093	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1_STOMACH	0	0.5	0.0742	FALSE	230	193	14	283	0	FALSE	ACH-000932
SNU1_STOMACH	PCBP2--MTND2P28	6	5	PCBP2	11799	chr12:53856307:+	MTND2P28	25731	chr1:565031:+	INCL_NON_REF_SPLICE	YES	3487	0	0	1	0.0556	0.0463	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SNU1_STOMACH	0	1	0.1019	TRUE	0	0	0	9	0	FALSE	ACH-000932
SNU1_STOMACH	RP11-275N1.1--NEBL	4	13	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	13	0	0.57	1	0.0371	0.1205	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	SNU1_STOMACH	0.57	1	0.1576	TRUE	0	2	0	25	2	FALSE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ATP8	5	6	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12663	88	0	0.11	0.0463	0.0556	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1_STOMACH	0	0.11	0.1019	FALSE	231	215	16	283	0	FALSE	ACH-000932
SNU1_STOMACH	PTMA--PTMS	6	2	PTMA	6024	chr2:232576657:+	PTMS	13970	chr12:6879335:+	INCL_NON_REF_SPLICE	YES	12009	1180	0	0.01	0.0556	0.0185	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	SNU1_STOMACH	0	0.01	0.0741	FALSE	0	0	0	16	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ATP6--MT-RNR2	5	4	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	10547	0	0	1	0.0463	0.0371	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1_STOMACH	0	1	0.0834	FALSE	63	17	1	58	0	FALSE	ACH-000932
SNU1_STOMACH	AP000350.4--PKM	3	11	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	71	1	0.16	0.0278	0.102	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	SNU1_STOMACH	0.16	1	0.1298	TRUE	0	0	0	14	0	TRUE	ACH-000932
SNU1_STOMACH	RP11-120D5.1--MID1	5	3	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	6	3	0.57	0.73	0.0463	0.0278	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU1_STOMACH	0.57	0.73	0.0741	FALSE	0	9	0	55	0	FALSE	ACH-000932
SNU1_STOMACH	MT-TA--MT-TC	5	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0.0185	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1_STOMACH	1	1	0.0648	FALSE	462	80	0	856	0	FALSE	ACH-000932
SNU1_STOMACH	PTMA--PTMS	4	6	PTMA	6060	chr2:232576693:+	PTMS	13783	chr12:6879148:+	INCL_NON_REF_SPLICE	YES	13231	1253	0	0.01	0.0371	0.0556	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	SNU1_STOMACH	0	0.01	0.0927	FALSE	0	0	0	16	0	FALSE	ACH-000932
SNU1_STOMACH	RP11-96H19.1--RP11-446N19.1	4	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0.0556	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1_STOMACH	1	1	0.0927	FALSE	407	2205	196	549	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ATP6--MT-CO1	5	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	12102	24150	0	0	0.0463	0.0093	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1_STOMACH	0	0	0.0556	FALSE	183	104	9	328	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ATP8	5	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10609	8	0	0.43	0.0463	0.0093	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1_STOMACH	0	0.43	0.0556	FALSE	230	198	14	283	0	FALSE	ACH-000932
SNU1_STOMACH	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1_STOMACH	1	1	0.0463	TRUE	0	0	0	434	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ATP6--MT-RNR2	3	7	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	12550	0	0	1	0.0278	0.0649	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1_STOMACH	0	1	0.0927	FALSE	63	17	1	58	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ATP6--MT-RNR2	4	3	MT-ATP6	1123	chrM:8649:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	12359	13006	0	0	0.0371	0.0278	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1_STOMACH	0	0	0.0649	FALSE	63	17	1	58	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ATP6--MT-RNR2	4	3	MT-ATP6	1121	chrM:8647:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	YES	12369	12206	0	0	0.0371	0.0278	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1_STOMACH	0	0	0.0649	FALSE	63	17	1	58	0	FALSE	ACH-000932
SNU1_STOMACH	RP11-275N1.1--NEBL	3	6	RP11-275N1.1	2205	chr10:21658896:-	NEBL	14143	chr10:21309130:-	ONLY_REF_SPLICE	YES	13	2	0.41	0.82	0.0278	0.0556	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	SNU1_STOMACH	0.41	0.82	0.0834	TRUE	0	0	0	3	0	TRUE	ACH-000932
SNU1_STOMACH	SLC38A2--PTMA	4	2	SLC38A2	2663	chr12:46764988:-	PTMA	17654	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	1136	0	0.01	1	0.0371	0.0185	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SNU1_STOMACH	0.01	1	0.0556	FALSE	0	0	0	10	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ATP6--MT-CO1	4	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	11257	22750	0	0	0.0371	0.0093	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1_STOMACH	0	0	0.0464	FALSE	183	104	9	328	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ATP6--MT-RNR2	3	5	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	13873	12179	0	0	0.0278	0.0463	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1_STOMACH	0	0	0.0741	FALSE	63	17	1	58	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ATP6--MT-RNR2	3	5	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	13811	12243	0	0	0.0278	0.0463	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1_STOMACH	0	0	0.0741	FALSE	63	17	1	58	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ATP8	3	5	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	15491	0	0	1	0.0278	0.0463	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1_STOMACH	0	1	0.0741	FALSE	231	217	16	283	0	FALSE	ACH-000932
SNU1_STOMACH	RPL18--TMSB4X	3	5	RPL18	4351	chr19:49119443:-	TMSB4X	8235	chrX:12993252:+	INCL_NON_REF_SPLICE	YES	4649	0	0	1	0.0278	0.0463	RPL18->chr19:49118585-49122793:-,ribosomal_protein_L18,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SNU1_STOMACH	0	1	0.0741	FALSE	0	0	0	4	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ATP8	3	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15024	88	0	0.07	0.0278	0.0371	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1_STOMACH	0	0.07	0.0649	FALSE	231	217	16	283	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ATP8	3	3	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	13197	238	0	0.02	0.0278	0.0278	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1_STOMACH	0	0.02	0.0556	FALSE	231	217	16	283	0	FALSE	ACH-000932
SNU1_STOMACH	AP000525.9--LA16c-60G3.6	3	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	15	0	0.25	1	0.0278	0.0185	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SNU1_STOMACH	0.25	1	0.0463	TRUE	0	5	0	18	5	TRUE	ACH-000932
SNU1_STOMACH	FAM83D--PPP1R16B	3	2	FAM83D	3907	chr20:37576643:+	PPP1R16B	25608	chr20:37551470:+	INCL_NON_REF_SPLICE	YES	472	0	0.01	1	0.0278	0.0185	LOCAL_REARRANGEMENT:+:[3288],FAM83D->chr20:37554955-37581703:+,family_with_sequence_similarity_83_member_D,PPP1R16B->Oncogene{Bushman},chr20:37434348-37551667:+,protein_phosphatase_1_regulatory_subunit_16B	SNU1_STOMACH	0.01	1	0.0463	FALSE	0	0	0	1	0	FALSE	ACH-000932
SNU1_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	1284	chrM:11043:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	12910	0	0	1	0.0278	0.0185	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1_STOMACH	0	1	0.0463	FALSE	231	205	14	283	0	FALSE	ACH-000932
SNU1_STOMACH	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0.0463	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1_STOMACH	1	1	0.0648	FALSE	515	4851	409	746	0	FALSE	ACH-000932
SNU1_STOMACH	AP003900.6--AP000345.1	3	0	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	SNU1_STOMACH	1	1	0.0278	TRUE	4	17	0	31	0	FALSE	ACH-000932
SNU1_STOMACH	MAEA--CTBP1	3	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SNU1_STOMACH	1	1	0.0278	TRUE	3	14	2	43	0	FALSE	ACH-000932
SNU1_STOMACH	PISD--NHP2L1	3	0	PISD	3545	chr22:32044087:-	NHP2L1	25386	chr22:42076368:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	PISD->chr22:32014477-32058418:-,phosphatidylserine_decarboxylase,NHP2L1->chr22:42069934-42086508:-	SNU1_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000932
SNU1_STOMACH	PTMA--PTMS	2	2	PTMA	6593	chr2:232577226:+	PTMS	14193	chr12:6879558:+	ONLY_REF_SPLICE	YES	12773	1306	0	0	0.0185	0.0185	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	SNU1_STOMACH	0	0	0.037	FALSE	0	0	0	16	0	FALSE	ACH-000932
SNU1_STOMACH	SCARB1--UBC	2	2	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	448	71	0.01	0.05	0.0185	0.0185	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU1_STOMACH	0.01	0.05	0.037	FALSE	55	66	6	101	0	FALSE	ACH-000932
SNU1_STOMACH	MTAP--CDKN2B-AS1	2	1	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	38778	chr9:22096371:+	ONLY_REF_SPLICE	YES	155	5	0.02	0.38	0.0185	0.0093	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	SNU1_STOMACH	0.02	0.38	0.0278	FALSE	0	2	0	7	0	FALSE	ACH-000932
SNU1_STOMACH	C17orf76-AS1--SET	2	0	C17orf76-AS1	1593	chr17:16342728:+	SET	17862	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	C17orf76-AS1->chr17:16342136-16381992:+,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1_STOMACH	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000932
SNU1_STOMACH	ELOVL5--TMEM8A	2	0	ELOVL5	1333	chr6:53213615:-	TMEM8A	23019	chr16:427848:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	ELOVL5->ELOVL_fatty_acid_elongase_5,Oncogene{Bushman},chr6:53132196-53213947:-,TMEM8A->chr16:420773-437113:-,transmembrane_protein_8A	SNU1_STOMACH	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000932
SNU1_STOMACH	LSMD1--SSBP1	2	0	LSMD1	2175	chr17:7786553:-	SSBP1	10194	chr7:141438924:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	LSMD1->chr17:7760003-7788556:-,SSBP1->chr7:141438121-141487722:+,single_stranded_DNA_binding_protein_1	SNU1_STOMACH	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000932
SNU1_STOMACH	MINOS1--CAPZB	2	0	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	SNU1_STOMACH	1	1	0.0185	TRUE	2	7	0	21	0	FALSE	ACH-000932
SNU1_STOMACH	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1_STOMACH	1	1	0.0185	FALSE	292	1546	117	613	0	FALSE	ACH-000932
SNU1_STOMACH	PPP5C--STRN4	2	0	PPP5C	2466	chr19:46857246:+	STRN4	29573	chr19:47232034:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,STRN4->chr19:47222764-47250251:-,striatin_4	SNU1_STOMACH	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000932
SNU1_STOMACH	PXMP2--ANKLE2	2	0	PXMP2	2662	chr12:133266962:+	ANKLE2	21143	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	LOCAL_INVERSION:+:-:[4978],PXMP2->chr12:133264192-133297276:+,peroxisomal_membrane_protein_2,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	SNU1_STOMACH	1	1	0.0185	TRUE	0	1	0	4	0	TRUE	ACH-000932
SNU1_STOMACH	RP11-275N1.1--NEBL	2	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	SNU1_STOMACH	1	1	0.0185	TRUE	0	0	0	21	0	FALSE	ACH-000932
SNU1_STOMACH	LINC00473--PDE10A	1	3	LINC00473	9097	chr6:166324296:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	2	1	0.67	0.8	0.0093	0.0278	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	SNU1_STOMACH	0.67	0.8	0.0371	FALSE	2	5	0	11	0	FALSE	ACH-000932
SNU1_STOMACH	RP11-120D5.1--MID1	1	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	3	0.4	0.57	0.0093	0.0278	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU1_STOMACH	0.4	0.57	0.0371	FALSE	16	356	14	466	0	FALSE	ACH-000932
SNU1_STOMACH	VTI1A--RP11-57H14.3	1	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	NO	66	0	0.04	1	0.0093	0.0185	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SNU1_STOMACH	0.04	1	0.0278	FALSE	272	151	14	158	0	FALSE	ACH-000932
SNU1_STOMACH	WDR90--GAPDH	1	2	WDR90	17057	chr16:715801:+	GAPDH	25448	chr12:6646475:+	ONLY_REF_SPLICE	YES	175	25585	0.02	0	0.0093	0.0185	WDR90->WD_repeat_domain_90,chr16:699311-717833:+,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	SNU1_STOMACH	0	0.02	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000932
SNU1_STOMACH	AC145110.1--RP11-486M23.2	1	1	AC145110.1	1271	chr8:29606095:+	RP11-486M23.2	14441	chr8:29421538:+	ONLY_REF_SPLICE	NO	381	0	0.01	1	0.0093	0.0093	AC145110.1->chr8:29605825-29656008:+,RP11-486M23.2->chr8:29405688-29421858:+	SNU1_STOMACH	0.01	1	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000932
SNU1_STOMACH	CAMKMT--PPM1B	1	1	CAMKMT	1196	chr2:44589284:+	PPM1B	30291	chr2:44428325:+	ONLY_REF_SPLICE	NO	137	384	0.01	0.01	0.0093	0.0093	CAMKMT->calmodulin-lysine_N-methyltransferase,chr2:44589089-44999731:+,PPM1B->chr2:44395108-44471523:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1B	SNU1_STOMACH	0.01	0.01	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000932
SNU1_STOMACH	DIP2C--ZMYND11	1	1	DIP2C	1250	chr10:735434:-	ZMYND11	52575	chr10:225934:+	ONLY_REF_SPLICE	YES	34	52	0.06	0.04	0.0093	0.0093	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[19553],DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	SNU1_STOMACH	0.04	0.06	0.0186	TRUE	0	0	0	5	0	FALSE	ACH-000932
SNU1_STOMACH	DTL--PPP2R5A	1	1	DTL	13203	chr1:212254092:+	PPP2R5A	28627	chr1:212502477:+	ONLY_REF_SPLICE	YES	156	101	0.01	0.02	0.0093	0.0093	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	SNU1_STOMACH	0.01	0.02	0.0186	FALSE	0	1	0	3	1	FALSE	ACH-000932
SNU1_STOMACH	EZH1--MSH6	1	1	EZH1	20020	chr17:40855758:-	MSH6	41730	chr2:48030559:+	ONLY_REF_SPLICE	YES	72	360	0.03	0.01	0.0093	0.0093	EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,MSH6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47922669-48037240:+,mutS_homolog_6	SNU1_STOMACH	0.01	0.03	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000932
SNU1_STOMACH	FENDRR--GNAS	1	1	FENDRR	4348	chr16:86523870:-	GNAS	30961	chr20:57470667:+	ONLY_REF_SPLICE	YES	1234	1532	0	0	0.0093	0.0093	FENDRR->FOXF1_adjacent_non-coding_developmental_regulatory_RNA,chr16:86508135-86542705:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNU1_STOMACH	0	0	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000932
SNU1_STOMACH	HNRNPA2B1--EEF1A1	1	1	HNRNPA2B1	1958	chr7:26240192:-	EEF1A1	17782	chr6:74229779:-	ONLY_REF_SPLICE	NO	5241	153	0	0.01	0.0093	0.0093	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	SNU1_STOMACH	0	0.01	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000932
SNU1_STOMACH	POLE4--RP11-355F16.1	1	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	213	0	0.01	1	0.0093	0.0093	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	SNU1_STOMACH	0.01	1	0.0186	FALSE	5	7	0	37	0	FALSE	ACH-000932
SNU1_STOMACH	RP11-77K12.1--FHL2	1	1	RP11-77K12.1	1239	chr16:75498366:-	FHL2	13135	chr2:106002997:-	ONLY_REF_SPLICE	YES	41	266	0.05	0.01	0.0093	0.0093	RP11-77K12.1->chr16:75446582-75498604:-,FHL2->Oncogene{Bushman},chr2:105974169-106054970:-,four_and_a_half_LIM_domains_2	SNU1_STOMACH	0.01	0.05	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000932
SNU1_STOMACH	RP4-769N13.6--LL0XNC01-237H1.2	1	1	RP4-769N13.6	4703	chrX:101860581:+	LL0XNC01-237H1.2	15292	chrX:102152502:+	ONLY_REF_SPLICE	YES	28	0	0.07	1	0.0093	0.0093	RP4-769N13.6->chrX:101854440-101969599:+,LL0XNC01-237H1.2->chrX:102139342-102161086:+	SNU1_STOMACH	0.07	1	0.0186	TRUE	0	1	0	1	1	TRUE	ACH-000932
SNU1_STOMACH	SSBP1--MGAM	1	1	SSBP1	9443	chr7:141450184:+	MGAM	20665	chr7:141705329:+	ONLY_REF_SPLICE	NO	2	0	0.5	1	0.0093	0.0093	SSBP1->chr7:141438121-141487722:+,single_stranded_DNA_binding_protein_1,MGAM->chr7:141607613-141806547:+,maltase-glucoamylase	SNU1_STOMACH	0.5	1	0.0186	TRUE	0	1	0	7	1	TRUE	ACH-000932
SNU1_STOMACH	STAG1--ZBTB38	1	1	STAG1	25771	chr3:136136727:-	ZBTB38	71686	chr3:141166478:+	ONLY_REF_SPLICE	YES	193	169	0.01	0.01	0.0093	0.0093	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38	SNU1_STOMACH	0.01	0.01	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000932
SNU1_STOMACH	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	1	1	0.67	0.0093	0.0093	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU1_STOMACH	0.67	1	0.0186	TRUE	62	24	1	171	0	FALSE	ACH-000932
NCIH2172_LUNG	MT-CO3--MT-ATP6	1114	36	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	4	1	1	10.0644	0.3252	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2172_LUNG	1	1	10.3896	FALSE	189	492	56	216	0	FALSE	ACH-000924
NCIH2172_LUNG	TIMM23B--LINC00843	126	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.1383	0.1897	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2172_LUNG	0.99	1	1.328	TRUE	508	994	45	981	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-TA--MT-TN	127	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1474	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2172_LUNG	1	1	1.1474	FALSE	369	2501	205	193	0	FALSE	ACH-000924
NCIH2172_LUNG	RP11-312O7.2--SRGAP2C	87	53	RP11-312O7.2	2914	chr1:206135293:-	SRGAP2C	5945	chr1:121107154:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.786	0.4788	RP11-312O7.2->chr1:206135293-206137984:-,SRGAP2C->SLIT-ROBO_Rho_GTPase_activating_protein_2C,chr1:121107124-121129949:+	NCIH2172_LUNG	1	1	1.2648	TRUE	0	6	1	1	6	TRUE	ACH-000924
NCIH2172_LUNG	TIMM23--RP11-464F9.1	73	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	243	4	0.24	0.95	0.6595	0.0181	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2172_LUNG	0.24	0.95	0.6776	TRUE	519	3926	326	965	0	FALSE	ACH-000924
NCIH2172_LUNG	ACBD5--RP11-476F14.1	70	6	ACBD5	7786	chr10:27508652:-	RP11-476F14.1	24024	chr10:33868297:-	ONLY_REF_SPLICE	YES	79	0	0.49	1	0.6324	0.0542	ACBD5->acyl-CoA_binding_domain_containing_5,chr10:27484146-27531059:-,RP11-476F14.1->chr10:33867859-33888968:-	NCIH2172_LUNG	0.49	1	0.6866	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	ARL13B--FRMD4B	68	11	ARL13B	5445	chr3:93722752:+	FRMD4B	42317	chr3:69271074:-	ONLY_REF_SPLICE	YES	33	0	0.71	1	0.6143	0.0994	{Klijn_CCL:Lung=1},ARL13B->ADP_ribosylation_factor_like_GTPase_13B,chr3:93698983-93774512:+,FRMD4B->FERM_domain_containing_4B,chr3:69219141-69591734:-	NCIH2172_LUNG	0.71	1	0.7137	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	MT-ND6--MT-TE	64	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5782	0.0452	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2172_LUNG	1	1	0.6234	FALSE	499	1288	110	792	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-TA--MT-TC	63	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5692	0.0813	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2172_LUNG	1	1	0.6505	FALSE	462	80	0	856	0	FALSE	ACH-000924
NCIH2172_LUNG	BBX--LINC00636	49	15	BBX	4463	chr3:107245245:+	LINC00636	46855	chr3:107642478:+	ONLY_REF_SPLICE	YES	19	0	0.77	1	0.4427	0.1355	NEIGHBORS[71924],BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,LINC00636->chr3:107602095-107647754:+,long_intergenic_non-protein_coding_RNA_636	NCIH2172_LUNG	0.77	1	0.5782	FALSE	0	1	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	HSPBP1--ZSWIM6	49	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4427	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	NCIH2172_LUNG	1	1	0.4427	TRUE	47	32	1	28	0	FALSE	ACH-000924
NCIH2172_LUNG	CALM3--MYL6	48	2	CALM3	4231	chr19:47109114:+	MYL6	12975	chr12:56553371:+	ONLY_REF_SPLICE	YES	727	64	0.06	0.44	0.4337	0.0181	HGNC_GENEFAM,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	NCIH2172_LUNG	0.06	0.44	0.4518	TRUE	0	0	0	8	0	TRUE	ACH-000924
NCIH2172_LUNG	MT-TA--MT-TN	23	81	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2078	0.7318	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2172_LUNG	1	1	0.9396	FALSE	369	2501	205	193	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	41	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3704	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.3704	FALSE	230	193	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	TRAK1--ARL13B	35	16	TRAK1	5299	chr3:42167106:+	ARL13B	38581	chr3:93722503:+	ONLY_REF_SPLICE	YES	69	57	0.42	0.47	0.3162	0.1446	{Klijn_CCL:Lung=1},TRAK1->chr3:42055294-42267381:+,trafficking_protein,_kinesin_binding_1,ARL13B->ADP_ribosylation_factor_like_GTPase_13B,chr3:93698983-93774512:+	NCIH2172_LUNG	0.42	0.47	0.4608	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	ZNF654--HMGB2	34	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3072	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2172_LUNG	1	1	0.3072	TRUE	0	0	0	518	0	FALSE	ACH-000924
NCIH2172_LUNG	BBX--FRMD4B	29	10	BBX	4463	chr3:107245245:+	FRMD4B	85587	chr3:69225807:-	ONLY_REF_SPLICE	YES	19	4	0.67	0.91	0.262	0.0903	BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,FRMD4B->FERM_domain_containing_4B,chr3:69219141-69591734:-	NCIH2172_LUNG	0.67	0.91	0.3523	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	MT-ND6--MT-TE	28	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.253	0.0452	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2172_LUNG	1	1	0.2982	FALSE	499	1288	110	792	0	FALSE	ACH-000924
NCIH2172_LUNG	PLXDC1--TAF13	29	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.262	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH2172_LUNG	1	1	0.262	TRUE	7	10	0	216	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND6--MT-TE	23	19	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.89	1	0.2078	0.1717	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2172_LUNG	0.89	1	0.3795	FALSE	499	1288	110	792	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-TA--MT-TN	22	20	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1988	0.1807	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2172_LUNG	1	1	0.3795	FALSE	369	2501	205	193	0	FALSE	ACH-000924
NCIH2172_LUNG	TSEN15--RGL1	24	10	TSEN15	2724	chr1:184023997:+	RGL1	32949	chr1:183891356:+	ONLY_REF_SPLICE	YES	136	9	0.2	0.79	0.2168	0.0903	TSEN15->chr1:184020811-184043346:+,tRNA_splicing_endonuclease_subunit_15,RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1	NCIH2172_LUNG	0.2	0.79	0.3071	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	UBAP1--DCAF12	18	22	UBAP1	1236	chr9:34179238:+	DCAF12	16941	chr9:34125275:-	ONLY_REF_SPLICE	YES	46	76	0.47	0.34	0.1626	0.1988	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:3=pct:1.7]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=5},LOCAL_INVERSION:+:-:[51606],UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,DCAF12->DDB1_and_CUL4_associated_factor_12,chr9:34086385-34127397:-	NCIH2172_LUNG	0.34	0.47	0.3614	TRUE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-TA--MT-TN	7	64	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0.5782	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2172_LUNG	1	1	0.6414	FALSE	369	2501	205	193	0	FALSE	ACH-000924
NCIH2172_LUNG	HSPBP1--GRK5	21	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1897	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH2172_LUNG	1	1	0.1897	TRUE	1	39	0	134	39	FALSE	ACH-000924
NCIH2172_LUNG	MT-TA--MT-TN	20	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1807	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2172_LUNG	1	1	0.1807	FALSE	369	2501	205	193	0	FALSE	ACH-000924
NCIH2172_LUNG	RP11-680G10.1--GSE1	17	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	42	1	0.34	0.1536	0.0452	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2172_LUNG	0.34	1	0.1988	TRUE	465	1949	224	605	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	17	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1536	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.1536	FALSE	230	198	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	RP11-680G10.1--GSE1	15	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	14	1	0.62	0.1355	0.0723	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2172_LUNG	0.62	1	0.2078	TRUE	458	1351	185	561	0	FALSE	ACH-000924
NCIH2172_LUNG	CDKAL1--MOB3B	15	5	CDKAL1	4234	chr6:20548936:+	MOB3B	26818	chr9:27359234:-	ONLY_REF_SPLICE	YES	38	22	0.34	0.48	0.1355	0.0452	{Klijn_CCL:Lung=1},CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+,MOB3B->MOB_kinase_activator_3B,chr9:27325207-27529779:-	NCIH2172_LUNG	0.34	0.48	0.1807	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	MT-TA--MT-TN	8	33	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0723	0.2981	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2172_LUNG	1	1	0.3704	FALSE	369	2501	205	193	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-CO3--MT-ATP6	5	44	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	YES	13	0	0.79	1	0.0452	0.3975	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2172_LUNG	0.79	1	0.4427	FALSE	189	492	56	216	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-TA--MT-TC	13	9	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1174	0.0813	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2172_LUNG	1	1	0.1987	FALSE	462	80	0	856	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-CO3--MT-ATP6	4	44	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13	0	0.79	1	0.0361	0.3975	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2172_LUNG	0.79	1	0.4336	FALSE	189	492	56	216	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-CO3--MT-ATP6	6	36	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	0	59	1	0.42	0.0542	0.3252	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2172_LUNG	0.42	1	0.3794	FALSE	189	492	56	216	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	13	8	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13903	4	0	0.84	0.1174	0.0723	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.84	0.1897	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	13	7	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13542	0	0	1	0.1174	0.0632	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.1806	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-TA--MT-TN	3	47	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0.4246	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2172_LUNG	1	1	0.4517	FALSE	369	2501	205	193	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND3--MT-ATP8	14	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1265	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.1265	FALSE	351	233	23	137	0	FALSE	ACH-000924
NCIH2172_LUNG	TRAPPC9--KCNK9	11	12	TRAPPC9	9369	chr8:141407719:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	YES	13	1	0.64	0.96	0.0994	0.1084	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	NCIH2172_LUNG	0.64	0.96	0.2078	FALSE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-CO3--MT-ATP6	3	43	MT-CO3	1207	chrM:9413:+	MT-ATP6	4736	chrM:8478:+	INCL_NON_REF_SPLICE	YES	15	0	0.75	1	0.0271	0.3885	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2172_LUNG	0.75	1	0.4156	FALSE	189	492	56	216	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	11	8	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13401	37	0	0.34	0.0994	0.0723	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.34	0.1717	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	13	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1174	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.1174	FALSE	231	205	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-TA--MT-TC	13	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1174	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2172_LUNG	1	1	0.1174	FALSE	462	80	0	856	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-TA--MT-TN	13	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1174	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2172_LUNG	1	1	0.1174	FALSE	369	2501	205	193	0	FALSE	ACH-000924
NCIH2172_LUNG	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1174	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2172_LUNG	1	1	0.1174	TRUE	0	0	0	434	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-CO3--MT-ATP6	3	39	MT-CO3	1126	chrM:9332:+	MT-ATP6	4943	chrM:8685:+	INCL_NON_REF_SPLICE	YES	6	15	0.88	0.74	0.0271	0.3523	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2172_LUNG	0.74	0.88	0.3794	FALSE	189	492	56	216	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-CO3--MT-ATP6	3	39	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	7	66	0.86	0.39	0.0271	0.3523	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2172_LUNG	0.39	0.86	0.3794	FALSE	189	492	56	216	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-TA--MT-TN	3	37	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0.3343	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2172_LUNG	1	1	0.3614	FALSE	369	2501	205	193	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-CO3--MT-ATP6	3	36	MT-CO3	1083	chrM:9289:+	MT-ATP6	5222	chrM:8964:+	INCL_NON_REF_SPLICE	YES	0	16	1	0.71	0.0271	0.3252	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2172_LUNG	0.71	1	0.3523	FALSE	189	492	56	216	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-TA--MT-TN	12	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1084	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2172_LUNG	1	1	0.1084	FALSE	369	2501	205	193	0	FALSE	ACH-000924
NCIH2172_LUNG	ENTPD1-AS1--TM9SF3	11	3	ENTPD1-AS1	1973	chr10:97849023:-	TM9SF3	37069	chr10:98321895:-	ONLY_REF_SPLICE	YES	1	156	0.93	0.08	0.0994	0.0271	ENTPD1-AS1->ENTPD1_antisense_RNA_1,chr10:97512963-97849995:-,TM9SF3->chr10:98277866-98347209:-,transmembrane_9_superfamily_member_3	NCIH2172_LUNG	0.08	0.93	0.1265	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	MT-ATP6--MT-CO1	11	2	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	YES	4742	15186	0	0	0.0994	0.0181	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2172_LUNG	0	0	0.1175	FALSE	183	104	9	328	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	10	6	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	16435	712	0	0.02	0.0903	0.0542	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.02	0.1445	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	NSMF--PNPLA7	9	10	NSMF	7970	chr9:140346817:-	PNPLA7	36406	chr9:140373690:-	ONLY_REF_SPLICE	YES	109	11	0.15	0.63	0.0813	0.0903	LOCAL_REARRANGEMENT:-:[618],NSMF->NMDA_receptor_synaptonuclear_signaling_and_neuronal_migration_factor,chr9:140342022-140353786:-,PNPLA7->chr9:140354404-140444986:-,patatin_like_phospholipase_domain_containing_7	NCIH2172_LUNG	0.15	0.63	0.1716	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	10	5	MT-ND4	1528	chrM:11287:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	NO	16908	0	0	1	0.0903	0.0452	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.1355	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-CO3--MT-ATP6	11	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0994	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2172_LUNG	1	1	0.0994	FALSE	189	492	56	216	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	8	9	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	13885	0	0	1	0.0723	0.0813	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.1536	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-CO3--MT-ATP6	3	28	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	NO	0	1	1	0.97	0.0271	0.253	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2172_LUNG	0.97	1	0.2801	FALSE	189	492	56	216	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND6--MT-TE	5	20	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0.1807	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2172_LUNG	1	1	0.2259	FALSE	499	1288	110	792	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	7	11	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13593	37	0	0.33	0.0632	0.0994	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.33	0.1626	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND6--MT-TE	3	27	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.86	1	0.0271	0.2439	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2172_LUNG	0.86	1	0.271	FALSE	499	1288	110	792	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	9	2	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	14664	0	0	1	0.0813	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.0994	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	9	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	14411	0	0	1	0.0813	0.009	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.0903	FALSE	231	205	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	6	13	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2583	37	0.01	0.34	0.0542	0.1174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0.01	0.34	0.1716	FALSE	216	209	16	281	0	FALSE	ACH-000924
NCIH2172_LUNG	UBAP1--DCAF12	8	5	UBAP1	1236	chr9:34179238:+	DCAF12	18196	chr9:34107563:-	ONLY_REF_SPLICE	YES	46	90	0.22	0.13	0.0723	0.0452	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:3=pct:1.7]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=5},LOCAL_INVERSION:+:-:[51606],UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,DCAF12->DDB1_and_CUL4_associated_factor_12,chr9:34086385-34127397:-	NCIH2172_LUNG	0.13	0.22	0.1175	TRUE	6	1	0	2	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ATP6--MT-CO1	8	3	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	7990	12080	0	0	0.0723	0.0271	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2172_LUNG	0	0	0.0994	FALSE	183	104	9	328	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	6	11	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13296	37	0	0.31	0.0542	0.0994	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.31	0.1536	FALSE	231	215	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	6	11	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	13703	0	0	1	0.0542	0.0994	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.1536	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	RP11-312O7.2--SRGAP2C	2	27	RP11-312O7.2	2914	chr1:206135293:-	SRGAP2C	7008	chr1:121115832:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0.2439	RP11-312O7.2->chr1:206135293-206137984:-,SRGAP2C->SLIT-ROBO_Rho_GTPase_activating_protein_2C,chr1:121107124-121129949:+	NCIH2172_LUNG	1	1	0.262	TRUE	0	6	1	1	6	TRUE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	4	18	MT-ND4	2324	chrM:12083:+	MT-ATP8	5419	chrM:8406:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0.1626	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.1987	FALSE	209	205	15	279	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	5	13	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	14788	0	0	1	0.0452	0.1174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.1626	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	5	13	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4866	37	0	0.33	0.0452	0.1174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.33	0.1626	FALSE	218	210	16	281	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND6--MT-TE	3	21	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0.1897	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2172_LUNG	1	1	0.2168	FALSE	499	1288	110	792	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-TA--MT-TN	8	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0723	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2172_LUNG	1	1	0.0723	FALSE	369	2501	205	193	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	4	15	MT-ND4	2048	chrM:11807:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	12891	0	0	1	0.0361	0.1355	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.1716	FALSE	231	215	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	IMPA2--EI24	7	2	IMPA2	1741	chr18:11981764:+	EI24	20142	chr11:125445159:+	ONLY_REF_SPLICE	YES	915	255	0.01	0.03	0.0632	0.0181	IMPA2->chr18:11981024-12030876:+,inositol_monophosphatase_2,EI24->EI24,_autophagy_associated_transmembrane_protein,chr11:125439112-125454575:+	NCIH2172_LUNG	0.01	0.03	0.0813	FALSE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ATP6--MT-CO1	7	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	8364	15466	0	0	0.0632	0.0181	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2172_LUNG	0	0	0.0813	FALSE	183	104	9	328	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-CO3--MT-ATP6	3	18	MT-CO3	1033	chrM:9239:+	MT-ATP6	4768	chrM:8510:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0.1626	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2172_LUNG	1	1	0.1897	FALSE	189	492	56	216	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	18	MT-ND4	2332	chrM:12091:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0.1626	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.1897	FALSE	209	205	15	279	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	4	13	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	13911	0	0	1	0.0361	0.1174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.1535	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	5	8	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	14303	751	0	0.02	0.0452	0.0723	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.02	0.1175	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-TA--MT-TN	7	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2172_LUNG	1	1	0.0632	FALSE	369	2501	205	193	0	FALSE	ACH-000924
NCIH2172_LUNG	TRAK1--FRMD4B	6	3	TRAK1	5299	chr3:42167106:+	FRMD4B	59005	chr3:69267530:-	ONLY_REF_SPLICE	YES	69	1	0.12	0.9	0.0542	0.0271	TRAK1->chr3:42055294-42267381:+,trafficking_protein,_kinesin_binding_1,FRMD4B->FERM_domain_containing_4B,chr3:69219141-69591734:-	NCIH2172_LUNG	0.12	0.9	0.0813	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	5	6	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16145	37	0	0.23	0.0452	0.0542	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.23	0.0994	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	4	10	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	13885	0	0	1	0.0361	0.0903	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.1264	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	4	10	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	13593	164	0	0.08	0.0361	0.0903	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.08	0.1264	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	13	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	NO	14908	0	0	1	0.0271	0.1174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.1445	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	13	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2	4	0.89	0.8	0.0271	0.1174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0.8	0.89	0.1445	FALSE	209	205	15	279	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	13	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	13836	0	0	1	0.0271	0.1174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.1445	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	5	5	MT-ND4	1572	chrM:11331:+	MT-ATP8	5534	chrM:8521:+	INCL_NON_REF_SPLICE	YES	15604	1799	0	0.01	0.0452	0.0452	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.01	0.0904	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	13	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	14197	0	0	1	0.0271	0.1174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.1445	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	6	1	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	15707	469	0	0.01	0.0542	0.009	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.01	0.0632	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-CO3--MT-ATP6	6	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2172_LUNG	1	1	0.0542	FALSE	189	492	56	216	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-TA--MT-TC	4	8	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0.0723	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2172_LUNG	1	1	0.1084	FALSE	462	80	0	856	0	FALSE	ACH-000924
NCIH2172_LUNG	NPM1P24--SET	6	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2172_LUNG	1	1	0.0542	TRUE	0	0	0	434	0	FALSE	ACH-000924
NCIH2172_LUNG	NSL1--SDK1	5	4	NSL1	4740	chr1:212955714:-	SDK1	16376	chr7:3658712:+	ONLY_REF_SPLICE	YES	24	0	0.27	1	0.0452	0.0361	NSL1->NSL1,_MIS12_kinetochore_complex_component,chr1:212899495-212965124:-,SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1	NCIH2172_LUNG	0.27	1	0.0813	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	MT-ATP6--MT-CO1	5	3	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	10102	14028	0	0	0.0452	0.0271	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2172_LUNG	0	0	0.0723	FALSE	183	104	9	328	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	4	7	MT-ND4	1761	chrM:11520:+	MT-ATP8	5456	chrM:8443:+	INCL_NON_REF_SPLICE	YES	13574	0	0	1	0.0361	0.0632	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.0993	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	11	MT-ND4	1998	chrM:11757:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14099	4	0	0.78	0.0271	0.0994	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.78	0.1265	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	4	7	MT-ND4	1759	chrM:11518:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	13567	0	0	1	0.0361	0.0632	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.0993	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ATP6--MT-CO1	4	6	MT-ATP6	1176	chrM:8702:+	MT-CO1	4969	chrM:6191:+	INCL_NON_REF_SPLICE	YES	11051	2789	0	0	0.0361	0.0542	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2172_LUNG	0	0	0.0903	FALSE	183	103	9	328	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	14695	0	0	1	0.0452	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.0633	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	2288	chrM:12047:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	YES	22	234	0.37	0.05	0.0271	0.0903	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0.05	0.37	0.1174	FALSE	213	207	15	279	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	4	6	MT-ND4	1544	chrM:11303:+	MT-ATP8	5455	chrM:8442:+	INCL_NON_REF_SPLICE	YES	16535	0	0	1	0.0361	0.0542	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.0903	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	GREM2--FMN2	5	1	GREM2	1266	chr1:240775184:-	FMN2	33221	chr1:240601361:+	ONLY_REF_SPLICE	YES	60	29	0.09	0.17	0.0452	0.009	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[14384],GREM2->chr1:240652873-240775449:-,gremlin_2,_DAN_family_BMP_antagonist,FMN2->chr1:240177648-240638489:+,formin_2	NCIH2172_LUNG	0.09	0.17	0.0542	TRUE	0	0	0	3	0	TRUE	ACH-000924
NCIH2172_LUNG	MT-ATP6--MT-CO1	3	9	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3089	16139	0	0	0.0271	0.0813	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2172_LUNG	0	0	0.1084	FALSE	183	104	9	328	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-CO3--MT-ATP6	4	5	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	7	1	0.56	0.9	0.0361	0.0452	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2172_LUNG	0.56	0.9	0.0813	FALSE	189	492	56	216	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-CO3--MT-ATP6	4	5	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.9	0.0361	0.0452	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2172_LUNG	0.9	1	0.0813	FALSE	189	492	56	216	0	FALSE	ACH-000924
NCIH2172_LUNG	NRIP1--AF127936.7	5	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.6	1	0.0452	0.009	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2172_LUNG	0.6	1	0.0542	FALSE	125	705	46	456	0	FALSE	ACH-000924
NCIH2172_LUNG	RP11-476K15.1--CTD-2015H3.2	5	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	2	1	0.75	0.86	0.0452	0.009	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCIH2172_LUNG	0.75	0.86	0.0542	FALSE	0	46	0	73	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.0452	FALSE	230	193	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1754	chrM:11513:+	MT-ATP8	5382	chrM:8369:+	INCL_NON_REF_SPLICE	YES	13542	0	0	1	0.0271	0.0723	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.0994	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.0452	FALSE	230	193	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	13780	0	0	1	0.0271	0.0723	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.0994	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	13443	0	0	1	0.0271	0.0723	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.0994	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1903	chrM:11662:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	14218	164	0	0.06	0.0271	0.0723	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.06	0.0994	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0452	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2172_LUNG	1	1	0.0452	FALSE	292	1546	117	613	0	FALSE	ACH-000924
NCIH2172_LUNG	PTP4A1--MT-CO3	5	0	PTP4A1	3957	chr6:64282541:+	MT-CO3	15841	chrM:9412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH2172_LUNG	1	1	0.0452	FALSE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	ARL13B--FRMD4B	3	7	ARL13B	5445	chr3:93722752:+	FRMD4B	43383	chr3:69267530:-	ONLY_REF_SPLICE	YES	33	1	0.23	0.91	0.0271	0.0632	{Klijn_CCL:Lung=1},ARL13B->ADP_ribosylation_factor_like_GTPase_13B,chr3:93698983-93774512:+,FRMD4B->FERM_domain_containing_4B,chr3:69219141-69591734:-	NCIH2172_LUNG	0.23	0.91	0.0903	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	MT-ATP6--MT-CO1	4	3	MT-ATP6	1121	chrM:8647:+	MT-CO1	4698	chrM:5920:+	INCL_NON_REF_SPLICE	YES	8251	0	0	1	0.0361	0.0271	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2172_LUNG	0	1	0.0632	FALSE	182	97	9	327	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	13903	802	0	0.01	0.0271	0.0632	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.01	0.0903	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	4	3	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	15198	0	0	1	0.0361	0.0271	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.0632	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	NRIP1--AF127936.7	4	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.47	1	0.0361	0.0271	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2172_LUNG	0.47	1	0.0632	FALSE	164	806	69	479	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ATP6--MT-CO1	4	2	MT-ATP6	1530	chrM:9056:+	MT-CO1	5890	chrM:7112:+	INCL_NON_REF_SPLICE	YES	4471	15189	0	0	0.0361	0.0181	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2172_LUNG	0	0	0.0542	FALSE	183	104	9	328	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-CO2--MT-ND1	4	2	MT-CO2	1229	chrM:7814:+	MT-ND1	4890	chrM:3512:+	INCL_NON_REF_SPLICE	YES	13840	4720	0	0	0.0361	0.0181	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH2172_LUNG	0	0	0.0542	FALSE	12	14	1	5	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-CO3--MT-ATP6	3	6	MT-CO3	1007	chrM:9213:+	MT-ATP6	5376	chrM:9118:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.9	0.0271	0.0542	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2172_LUNG	0.9	1	0.0813	FALSE	189	492	56	216	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1314	chrM:11073:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	15001	0	0	1	0.0361	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.0542	FALSE	231	205	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1471	chrM:11230:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14434	4	0	0.6	0.0361	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.6	0.0542	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	16688	164	0	0.05	0.0271	0.0542	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.05	0.0813	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MET--CAV1	4	1	MET	1188	chr7:116312631:+	CAV1	32070	chr7:116166579:+	ONLY_REF_SPLICE	YES	16	281	0.24	0.02	0.0361	0.009	{Klijn_CCL:Head-Neck=1},MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	NCIH2172_LUNG	0.02	0.24	0.0451	TRUE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ATP6--MT-CO1	3	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	10204	0	0	1	0.0271	0.0361	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2172_LUNG	0	1	0.0632	FALSE	182	97	9	327	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2172_LUNG	1	1	0.0361	FALSE	189	492	56	216	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND3--MT-ATP8	4	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.0361	FALSE	351	233	23	137	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.0361	FALSE	231	204	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.0361	FALSE	230	198	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1170	chrM:10929:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.0361	FALSE	230	193	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2172_LUNG	1	1	0.0361	FALSE	499	1288	110	792	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2172_LUNG	1	1	0.0361	FALSE	499	1288	110	792	0	FALSE	ACH-000924
NCIH2172_LUNG	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2172_LUNG	1	1	0.0361	TRUE	0	0	0	434	0	FALSE	ACH-000924
NCIH2172_LUNG	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2172_LUNG	1	1	0.0361	TRUE	0	0	0	434	0	FALSE	ACH-000924
NCIH2172_LUNG	PTP4A1--MT-CO3	4	0	PTP4A1	3971	chr6:64282555:+	MT-CO3	15856	chrM:9427:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH2172_LUNG	1	1	0.0361	FALSE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ATP6--MT-CO1	3	3	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	9649	14073	0	0	0.0271	0.0271	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2172_LUNG	0	0	0.0542	FALSE	183	104	9	328	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	14695	0	0	1	0.0271	0.0271	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	1	0.0542	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8332	15860	0	0	0.0271	0.0181	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2172_LUNG	0	0	0.0452	FALSE	183	104	9	328	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8326	15746	0	0	0.0271	0.0181	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2172_LUNG	0	0	0.0452	FALSE	183	104	9	328	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15237	4	0	0.56	0.0271	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.56	0.0452	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1477	chrM:11236:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	14741	4	0	0.56	0.0271	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0.56	0.0452	FALSE	231	217	16	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	15003	1432	0	0	0.0271	0.009	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	0	0	0.0361	FALSE	231	205	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	SUCLG2--RP11-81N13.1	3	1	SUCLG2	2254	chr3:67659879:-	RP11-81N13.1	23581	chr3:67797195:+	ONLY_REF_SPLICE	YES	308	66	0.01	0.06	0.0271	0.009	LOCAL_INVERSION:-:+:[83],SUCLG2->chr3:67410884-67705038:-,succinate-CoA_ligase_GDP-forming_beta_subunit,RP11-81N13.1->chr3:67705121-67998137:+	NCIH2172_LUNG	0.01	0.06	0.0361	FALSE	0	1	0	2	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1074	chrM:8600:+	MT-CO1	5869	chrM:7091:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2172_LUNG	1	1	0.0271	FALSE	183	104	9	328	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2172_LUNG	1	1	0.0271	FALSE	189	492	56	216	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND3--MT-ATP8	3	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4423	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.0271	FALSE	351	233	23	137	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.0271	FALSE	230	193	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.0271	FALSE	230	198	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1093	chrM:10852:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.0271	FALSE	230	193	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.0271	FALSE	230	191	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.0271	FALSE	231	204	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.0271	FALSE	231	204	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2172_LUNG	1	1	0.0271	FALSE	231	205	14	283	0	FALSE	ACH-000924
NCIH2172_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4584	chrM:14684:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2172_LUNG	1	1	0.0271	FALSE	499	1288	110	792	0	FALSE	ACH-000924
NCIH2172_LUNG	NPM1P24--SET	3	0	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2172_LUNG	1	1	0.0271	TRUE	0	0	0	434	0	FALSE	ACH-000924
NCIH2172_LUNG	NUP93--MT2A	3	0	NUP93	1107	chr16:56764123:+	MT2A	32370	chr16:56642904:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	NUP93->ArcherDX_panel,FoundationOne_panel,chr16:56764017-56878797:+,nucleoporin_93kDa,MT2A->chr16:56642111-56643409:+,metallothionein_2A	NCIH2172_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	RP11-357C3.3--ARHGEF9	3	0	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	31030	chrX:62875617:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	NCIH2172_LUNG	1	1	0.0271	TRUE	0	1	0	2	0	TRUE	ACH-000924
NCIH2172_LUNG	TNFRSF1A--PTMS	3	0	TNFRSF1A	1339	chr12:6450942:-	PTMS	13541	chr12:6878769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	TNFRSF1A->Oncogene{Bushman},chr12:6437923-6451280:-,tumor_necrosis_factor_receptor_superfamily_member_1A,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH2172_LUNG	1	1	0.0271	TRUE	0	0	0	2	0	TRUE	ACH-000924
NCIH2172_LUNG	TSEN15--RGL1	3	0	TSEN15	1214	chr1:184021024:+	RGL1	32949	chr1:183891356:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	TSEN15->chr1:184020811-184043346:+,tRNA_splicing_endonuclease_subunit_15,RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1	NCIH2172_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	NSL1--SDK1	2	3	NSL1	3463	chr1:212957705:-	SDK1	16376	chr7:3658712:+	ONLY_REF_SPLICE	YES	19	0	0.21	1	0.0181	0.0271	NSL1->NSL1,_MIS12_kinetochore_complex_component,chr1:212899495-212965124:-,SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1	NCIH2172_LUNG	0.21	1	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	TSEN15--RGL1	2	3	TSEN15	2296	chr1:184023569:+	RGL1	32949	chr1:183891356:+	ONLY_REF_SPLICE	YES	223	9	0.02	0.36	0.0181	0.0271	TSEN15->chr1:184020811-184043346:+,tRNA_splicing_endonuclease_subunit_15,RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1	NCIH2172_LUNG	0.02	0.36	0.0452	TRUE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	36	0.8	0.1	0.0181	0.0181	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2172_LUNG	0.1	0.8	0.0362	FALSE	16	356	14	466	0	FALSE	ACH-000924
NCIH2172_LUNG	AC091878.1--BASP1	2	1	AC091878.1	1971	chr5:17216186:-	BASP1	13448	chr5:17275317:+	ONLY_REF_SPLICE	YES	0	1812	1	0	0.0181	0.009	NEIGHBORS_OVERLAP:-:+:[87019],AC091878.1->chr5:17130137-17217156:-,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	NCIH2172_LUNG	0	1	0.0271	FALSE	1	0	0	2	0	FALSE	ACH-000924
NCIH2172_LUNG	ACTR10--C14orf37	2	1	ACTR10	12145	chr14:58690574:+	C14orf37	23076	chr14:58606132:-	ONLY_REF_SPLICE	YES	193	1	0.02	0.75	0.0181	0.009	NEIGHBORS_OVERLAP:+:-:[34952],ACTR10->actin-related_protein_10_homolog,chr14:58666798-58701750:+,C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37	NCIH2172_LUNG	0.02	0.75	0.0271	FALSE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	AGPAT5--RP1L1	2	1	AGPAT5	3256	chr8:6582460:+	RP1L1	20436	chr8:10480730:-	ONLY_REF_SPLICE	YES	41	0	0.07	1	0.0181	0.009	AGPAT5->1-acylglycerol-3-phosphate_O-acyltransferase_5,chr8:6565878-6617184:+,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	NCIH2172_LUNG	0.07	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	CSRNP1--EEF1D	2	1	CSRNP1	2125	chr3:39194929:-	EEF1D	21899	chr8:144669022:-	ONLY_REF_SPLICE	YES	39	267	0.07	0.01	0.0181	0.009	CSRNP1->chr3:39183346-39196053:-,cysteine_and_serine_rich_nuclear_protein_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	NCIH2172_LUNG	0.01	0.07	0.0271	FALSE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	FBRSL1--NOC4L	2	1	FBRSL1	11388	chr12:133124618:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	36	40	0.08	0.07	0.0181	0.009	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	NCIH2172_LUNG	0.07	0.08	0.0271	TRUE	0	1	1	1	0	FALSE	ACH-000924
NCIH2172_LUNG	GATS--PILRB	2	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	6	52	0.33	0.05	0.0181	0.009	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	NCIH2172_LUNG	0.05	0.33	0.0271	TRUE	57	41	2	35	0	FALSE	ACH-000924
NCIH2172_LUNG	GREM2--FMN2	2	1	GREM2	1266	chr1:240775184:-	FMN2	32169	chr1:240555811:+	ONLY_REF_SPLICE	YES	60	26	0.05	0.1	0.0181	0.009	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[14384],GREM2->chr1:240652873-240775449:-,gremlin_2,_DAN_family_BMP_antagonist,FMN2->chr1:240177648-240638489:+,formin_2	NCIH2172_LUNG	0.05	0.1	0.0271	TRUE	0	0	0	3	0	FALSE	ACH-000924
NCIH2172_LUNG	GREM2--FMN2	2	1	GREM2	1266	chr1:240775184:-	FMN2	38051	chr1:240635672:+	ONLY_REF_SPLICE	YES	60	142	0.05	0.02	0.0181	0.009	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[14384],GREM2->chr1:240652873-240775449:-,gremlin_2,_DAN_family_BMP_antagonist,FMN2->chr1:240177648-240638489:+,formin_2	NCIH2172_LUNG	0.02	0.05	0.0271	TRUE	0	0	0	2	0	FALSE	ACH-000924
NCIH2172_LUNG	RAB2A--ASPH	2	1	RAB2A	1397	chr8:61429812:+	ASPH	22520	chr8:62596747:-	ONLY_REF_SPLICE	YES	207	1042	0.01	0	0.0181	0.009	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},{Klijn_CCL:Lung=1},RAB2A->RAB2A,_member_RAS_oncogene_family,chr8:61429416-61536186:+,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	NCIH2172_LUNG	0	0.01	0.0271	FALSE	0	0	0	2	0	FALSE	ACH-000924
NCIH2172_LUNG	ATRX--SCAPER	2	0	ATRX	1235	chrX:77041468:-	SCAPER	61144	chr15:77067458:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,SCAPER->S-phase_cyclin_A-associated_protein_in_the_ER,chr15:76640526-77197785:-	NCIH2172_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	CCDC122--ENOX1	2	0	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	NCIH2172_LUNG	1	1	0.0181	FALSE	39	52	2	34	0	FALSE	ACH-000924
NCIH2172_LUNG	CSGALNACT1--SH2D4A	2	0	CSGALNACT1	2955	chr8:19589967:-	SH2D4A	38545	chr8:19250829:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[7943],CSGALNACT1->chondroitin_sulfate_N-acetylgalactosaminyltransferase_1,chr8:19261672-19615540:-,SH2D4A->SH2_domain_containing_4A,chr8:19171128-19253729:+	NCIH2172_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	CYTH1--USP36	2	0	CYTH1	1096	chr17:76778284:-	USP36	28423	chr17:76834832:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_REARRANGEMENT:-:[5084],CYTH1->chr17:76670130-76778379:-,cytohesin_1,USP36->chr17:76783463-76837523:-,ubiquitin_specific_peptidase_36	NCIH2172_LUNG	1	1	0.0181	TRUE	0	1	0	3	1	TRUE	ACH-000924
NCIH2172_LUNG	RBL1--C20orf24	2	0	RBL1	22455	chr20:35632105:-	C20orf24	30497	chr20:35236118:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	RBL1->Oncogene{Bushman},chr20:35624752-35724398:-,chr20:35724188-35725581:+,retinoblastoma-like_1,C20orf24->chr20:35234137-35240960:+,chromosome_20_open_reading_frame_24	NCIH2172_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	RP11-357C3.3--ARHGEF9	2	0	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	27535	chrX:62898452:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	NCIH2172_LUNG	1	1	0.0181	TRUE	0	2	0	6	0	TRUE	ACH-000924
NCIH2172_LUNG	RP11-59N23.1--CMAS	2	0	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH2172_LUNG	1	1	0.0181	TRUE	21	102	17	28	0	FALSE	ACH-000924
NCIH2172_LUNG	UBAP1--DCAF12	2	0	UBAP1	1236	chr9:34179238:+	DCAF12	24082	chr9:34089588:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:3=pct:1.7]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=5},LOCAL_INVERSION:+:-:[51606],UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,DCAF12->DDB1_and_CUL4_associated_factor_12,chr9:34086385-34127397:-	NCIH2172_LUNG	1	1	0.0181	TRUE	1	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	TEAD1--PARVA	1	3	TEAD1	4496	chr11:12785981:+	PARVA	32787	chr11:12495292:+	ONLY_REF_SPLICE	NO	93	197	0.04	0.02	0.009	0.0271	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	NCIH2172_LUNG	0.02	0.04	0.0361	TRUE	3	5	0	10	0	FALSE	ACH-000924
NCIH2172_LUNG	ENOX1--DNAJC15	1	2	ENOX1	18607	chr13:43839534:-	DNAJC15	26933	chr13:43639822:+	ONLY_REF_SPLICE	YES	21	284	0.12	0.01	0.009	0.0181	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Frontal_Cortex_(BA9)=1},ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1,DNAJC15->DnaJ_heat_shock_protein_family_(Hsp40)_member_C15,chr13:43597339-43683045:+	NCIH2172_LUNG	0.01	0.12	0.0271	FALSE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.009	0.0181	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2172_LUNG	1	1	0.0271	FALSE	416	2512	207	587	0	FALSE	ACH-000924
NCIH2172_LUNG	SUCLG2--RP11-81N13.1	1	2	SUCLG2	9954	chr3:67546222:-	RP11-81N13.1	23581	chr3:67797195:+	ONLY_REF_SPLICE	YES	334	66	0.01	0.04	0.009	0.0181	LOCAL_INVERSION:-:+:[83],SUCLG2->chr3:67410884-67705038:-,succinate-CoA_ligase_GDP-forming_beta_subunit,RP11-81N13.1->chr3:67705121-67998137:+	NCIH2172_LUNG	0.01	0.04	0.0271	FALSE	0	0	0	2	0	FALSE	ACH-000924
NCIH2172_LUNG	CHD2--SON	1	1	CHD2	6529	chr15:93444529:+	SON	72219	chr21:34931536:+	ONLY_REF_SPLICE	NO	131	107	0.02	0.02	0.009	0.009	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SON->SON_DNA_binding_protein,chr21:34914924-34949812:+	NCIH2172_LUNG	0.02	0.02	0.018	TRUE	0	0	0	2	0	FALSE	ACH-000924
NCIH2172_LUNG	CSGALNACT1--SH2D4A	1	1	CSGALNACT1	5959	chr8:19499298:-	SH2D4A	38545	chr8:19250829:+	ONLY_REF_SPLICE	NO	13	250	0.13	0.01	0.009	0.009	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[7943],CSGALNACT1->chondroitin_sulfate_N-acetylgalactosaminyltransferase_1,chr8:19261672-19615540:-,SH2D4A->SH2_domain_containing_4A,chr8:19171128-19253729:+	NCIH2172_LUNG	0.01	0.13	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	CYP24A1--AKR1E2	1	1	CYP24A1	10936	chr20:52773708:-	AKR1E2	19818	chr10:4872867:+	ONLY_REF_SPLICE	NO	829	6	0	0.25	0.009	0.009	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	NCIH2172_LUNG	0	0.25	0.018	FALSE	0	0	0	2	0	FALSE	ACH-000924
NCIH2172_LUNG	ERBB4--CPS1	1	1	ERBB4	1393	chr2:213403173:-	CPS1	73257	chr2:211502426:+	ONLY_REF_SPLICE	YES	2	1248	0.5	0	0.009	0.009	ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,CPS1->carbamoyl-phosphate_synthase_1,chr2:211342406-211543831:+	NCIH2172_LUNG	0	0.5	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	FRAS1--BMP2K	1	1	FRAS1	26619	chr4:79258971:+	BMP2K	94540	chr4:79747191:+	ONLY_REF_SPLICE	NO	2	5	0.5	0.29	0.009	0.009	FRAS1->Fraser_extracellular_matrix_complex_subunit_1,chr4:78978724-79465423:+,BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+	NCIH2172_LUNG	0.29	0.5	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000924
NCIH2172_LUNG	LARP4--TXNRD1	1	1	LARP4	2426	chr12:50794811:+	TXNRD1	46418	chr12:104705068:+	ONLY_REF_SPLICE	NO	43	1872	0.04	0	0.009	0.009	LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	NCIH2172_LUNG	0	0.04	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	LPP--RPL39L	1	1	LPP	20797	chr3:188426181:+	RPL39L	57575	chr3:186845850:-	ONLY_REF_SPLICE	NO	42	245	0.05	0.01	0.009	0.009	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Artery_-_Coronary=1},LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,RPL39L->chr3:186838736-186898696:-,ribosomal_protein_L39_like	NCIH2172_LUNG	0.01	0.05	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	MARCH7--PSMD14	1	1	MARCH7	4468	chr2:160585686:+	PSMD14	26340	chr2:162223989:+	ONLY_REF_SPLICE	YES	102	421	0.02	0	0.009	0.009	MARCH7->chr2:160569000-160627538:+,membrane_associated_ring-CH-type_finger_7,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	NCIH2172_LUNG	0	0.02	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	METAP1--EIF4E	1	1	METAP1	1248	chr4:99917018:+	EIF4E	28557	chr4:99823133:-	ONLY_REF_SPLICE	NO	101	5	0.02	0.29	0.009	0.009	{Klijn_CCL:Sarcomatoid=1,Stomach=1},LOCAL_INVERSION:+:-:[64983],METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1,EIF4E->Oncogene{Bushman},chr4:99792835-99851788:-,eukaryotic_translation_initiation_factor_4E	NCIH2172_LUNG	0.02	0.29	0.018	TRUE	0	1	0	7	1	FALSE	ACH-000924
NCIH2172_LUNG	MGAT4B--LARP4B	1	1	MGAT4B	6005	chr5:179228784:-	LARP4B	16751	chr10:931700:-	ONLY_REF_SPLICE	YES	226	1	0.01	0.67	0.009	0.009	MGAT4B->chr5:179224597-179233952:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_B,LARP4B->La_ribonucleoprotein_domain_family_member_4B,chr10:855484-977564:-	NCIH2172_LUNG	0.01	0.67	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	NETO2--VPS35	1	1	NETO2	1419	chr16:47177490:-	VPS35	20421	chr16:46717518:-	ONLY_REF_SPLICE	NO	76	7	0.03	0.22	0.009	0.009	NETO2->chr16:47111614-47177908:-,neuropilin_and_tolloid_like_2,VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-	NCIH2172_LUNG	0.03	0.22	0.018	TRUE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	RP11-476K15.1--CTD-2015H3.2	1	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.009	0.009	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCIH2172_LUNG	0.5	1	0.018	FALSE	0	46	0	73	0	FALSE	ACH-000924
NCIH2172_LUNG	SBNO2--PFDN5	1	1	SBNO2	12127	chr19:1122138:-	PFDN5	30658	chr12:53691634:+	ONLY_REF_SPLICE	YES	48	1024	0.04	0	0.009	0.009	SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),PFDN5->chr12:53689075-53693234:+,prefoldin_subunit_5	NCIH2172_LUNG	0	0.04	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000924
NCIH2172_LUNG	VAPA--PPP4R1	1	1	VAPA	2064	chr18:9915062:+	PPP4R1	27943	chr18:9595100:-	ONLY_REF_SPLICE	YES	566	60	0	0.03	0.009	0.009	VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1	NCIH2172_LUNG	0	0.03	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000924
HEC59_ENDOMETRIUM	PSAT1--CEP78	138	73	PSAT1	7937	chr9:80932720:+	CEP78	15579	chr9:80854939:+	ONLY_REF_SPLICE	YES	1604	89	0.12	0.7	1.7435	0.9223	LOCAL_REARRANGEMENT:+:[17453],PSAT1->chr9:80912059-80945009:+,phosphoserine_aminotransferase_1,CEP78->centrosomal_protein_78,chr9:80850978-80894606:+	HEC59_ENDOMETRIUM	0.12	0.7	2.6658	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	TIMM23B--LINC00843	143	37	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.8066	0.4675	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HEC59_ENDOMETRIUM	1	1	2.2741	TRUE	508	994	45	981	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	TIMM23--RP11-464F9.1	100	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	262	4	0.28	0.96	1.2634	0.0126	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HEC59_ENDOMETRIUM	0.28	0.96	1.276	TRUE	519	3926	326	965	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	CBLC--CEACAM16	77	21	CBLC	6223	chr19:45293348:+	CEACAM16	15630	chr19:45206619:+	ONLY_REF_SPLICE	YES	18	0	0.84	1	0.9728	0.2653	LOCAL_REARRANGEMENT:+:[67140],CBLC->Cbl_proto-oncogene_C,Oncogene{Bushman},chr19:45281126-45303891:+,CEACAM16->carcinoembryonic_antigen_related_cell_adhesion_molecule_16,chr19:45202421-45213986:+	HEC59_ENDOMETRIUM	0.84	1	1.2381	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CAPZA2--MET	73	10	CAPZA2	3371	chr7:116502704:+	MET	34809	chr7:116395409:+	ONLY_REF_SPLICE	YES	202	242	0.29	0.26	0.9223	0.1263	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HEC59_ENDOMETRIUM	0.26	0.29	1.0486	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	TGFBR2--AC116035.1	61	13	TGFBR2	1476	chr3:30648469:+	AC116035.1	15663	chr3:30566195:+	INCL_NON_REF_SPLICE	YES	29	0	0.72	1	0.7707	0.1642	LOCAL_REARRANGEMENT:+:[79317],TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,AC116035.1->chr3:30566237-30568677:+	HEC59_ENDOMETRIUM	0.72	1	0.9349	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	LSM12--HDAC5	53	39	LSM12	3290	chr17:42141169:-	HDAC5	20129	chr17:42165064:-	ONLY_REF_SPLICE	YES	227	22	0.29	0.81	0.6696	0.4927	LOCAL_REARRANGEMENT:-:[9127],LSM12->LSM12_homolog,chr17:42112003-42144987:-,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	HEC59_ENDOMETRIUM	0.29	0.81	1.1623	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	LSM12--HDAC5	36	16	LSM12	3290	chr17:42141169:-	HDAC5	22934	chr17:42162043:-	ONLY_REF_SPLICE	YES	227	64	0.19	0.45	0.4548	0.2021	LOCAL_REARRANGEMENT:-:[9127],LSM12->LSM12_homolog,chr17:42112003-42144987:-,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	HEC59_ENDOMETRIUM	0.19	0.45	0.6569	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	MRPL33--GPN1	35	14	MRPL33	7907	chr2:28152775:+	GPN1	13615	chr2:27852726:+	ONLY_REF_SPLICE	YES	12	168	0.8	0.23	0.4422	0.1769	MRPL33->chr2:27994584-28210954:+,mitochondrial_ribosomal_protein_L33,GPN1->GPN-loop_GTPase_1,chr2:27851114-27874375:+	HEC59_ENDOMETRIUM	0.23	0.8	0.6191	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	TGFBR2--AC116035.1	25	21	TGFBR2	2551	chr3:30664765:+	AC116035.1	15663	chr3:30566195:+	INCL_NON_REF_SPLICE	YES	37	0	0.55	1	0.3158	0.2653	LOCAL_REARRANGEMENT:+:[79317],TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,AC116035.1->chr3:30566237-30568677:+	HEC59_ENDOMETRIUM	0.55	1	0.5811	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	ZNF654--HMGB2	27	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3411	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HEC59_ENDOMETRIUM	1	1	0.3411	TRUE	0	0	0	518	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	LSM12--HDAC5	19	21	LSM12	3290	chr17:42141169:-	HDAC5	21088	chr17:42164105:-	ONLY_REF_SPLICE	YES	227	32	0.15	0.56	0.24	0.2653	LOCAL_REARRANGEMENT:-:[9127],LSM12->LSM12_homolog,chr17:42112003-42144987:-,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	HEC59_ENDOMETRIUM	0.15	0.56	0.5053	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CLIP4--FAM179A	20	11	CLIP4	20436	chr2:29390406:+	FAM179A	33900	chr2:29217591:+	ONLY_REF_SPLICE	YES	54	0	0.36	1	0.2527	0.139	LOCAL_REARRANGEMENT:+:[36332],CLIP4->CAP-Gly_domain_containing_linker_protein_family_member_4,chr2:29320571-29412509:+,FAM179A->chr2:29179477-29284239:+,family_with_sequence_similarity_179_member_A	HEC59_ENDOMETRIUM	0.36	1	0.3917	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	ZBTB20--LSAMP	20	8	ZBTB20	6598	chr3:114693213:-	LSAMP	53449	chr3:115571464:-	ONLY_REF_SPLICE	YES	3	0	0.9	1	0.2527	0.1011	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1|PRAD:1],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	HEC59_ENDOMETRIUM	0.9	1	0.3538	TRUE	0	0	0	2	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	LAMC1--DHX9	19	7	LAMC1	1675	chr1:182993269:+	DHX9	55682	chr1:182852274:+	ONLY_REF_SPLICE	YES	461	369	0.05	0.07	0.24	0.0884	LAMC1->chr1:182992595-183114727:+,laminin_subunit_gamma_1,DHX9->DEAH-box_helicase_9,Oncogene{Bushman},chr1:182808504-182856886:+	HEC59_ENDOMETRIUM	0.05	0.07	0.3284	TRUE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	CTD-2280E9.1--PTPRZ1	20	0	CTD-2280E9.1	1099	chr5:121719165:-	PTPRZ1	26292	chr7:121671528:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2527	0	CTD-2280E9.1->chr5:121705457-121719263:-,PTPRZ1->chr7:121513143-121702090:+,protein_tyrosine_phosphatase,_receptor_type_Z1	HEC59_ENDOMETRIUM	1	1	0.2527	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	MT-TA--MT-TC	19	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.24	0.0379	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC59_ENDOMETRIUM	1	1	0.2779	FALSE	462	80	0	856	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	TPD52--ZNF704	17	7	TPD52	19734	chr8:80954855:-	ZNF704	42930	chr8:81555364:-	ONLY_REF_SPLICE	YES	139	3	0.15	0.89	0.2148	0.0884	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,ZNF704->chr8:81540686-81787016:-,zinc_finger_protein_704	HEC59_ENDOMETRIUM	0.15	0.89	0.3032	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND4--MT-ATP8	18	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	8772	0	0	1	0.2274	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC59_ENDOMETRIUM	0	1	0.24	FALSE	230	193	14	283	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND6--MT-TE	18	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2274	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC59_ENDOMETRIUM	1	1	0.2274	FALSE	499	1288	110	792	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-ATP6--MT-CO2	16	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	32	1	0.4	0.95	0.2021	0.0632	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC59_ENDOMETRIUM	0.4	0.95	0.2653	FALSE	59	21	0	114	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	PXN--MSI1	16	3	PXN	1155	chr12:120703420:-	MSI1	25359	chr12:120802558:-	ONLY_REF_SPLICE	YES	39	18	0.33	0.51	0.2021	0.0379	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[75559],PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,MSI1->chr12:120779133-120806983:-,musashi_RNA_binding_protein_1	HEC59_ENDOMETRIUM	0.33	0.51	0.24	TRUE	0	1	0	1	1	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CAMKMT--SLC3A1	13	13	CAMKMT	4731	chr2:44617444:+	SLC3A1	28029	chr2:44502643:+	INCL_NON_REF_SPLICE	YES	40	0	0.39	1	0.1642	0.1642	LOCAL_REARRANGEMENT:+:[40456],CAMKMT->calmodulin-lysine_N-methyltransferase,chr2:44589089-44999731:+,SLC3A1->chr2:44502599-44548633:+,solute_carrier_family_3_member_1	HEC59_ENDOMETRIUM	0.39	1	0.3284	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CRLF3--AC091177.1	14	3	CRLF3	9742	chr17:29119454:-	AC091177.1	21961	chr17:29283618:-	INCL_NON_REF_SPLICE	YES	40	1	0.3	0.94	0.1769	0.0379	CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3,AC091177.1->chr17:29283298-29283979:-	HEC59_ENDOMETRIUM	0.3	0.94	0.2148	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CDK17--C12orf55	11	12	CDK17	1575	chr12:96793764:-	C12orf55	28219	chr12:96894612:+	ONLY_REF_SPLICE	YES	71	8	0.24	0.74	0.139	0.1516	LOCAL_INVERSION:-:+:[89011],CDK17->chr12:96672039-96794338:-,cyclin-dependent_kinase_17,C12orf55->chr12:96883349-97269333:+	HEC59_ENDOMETRIUM	0.24	0.74	0.2906	TRUE	0	0	0	2	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	LSM12--HDAC5	2	42	LSM12	3290	chr17:42141169:-	HDAC5	19227	chr17:42165966:-	ONLY_REF_SPLICE	YES	227	17	0.16	0.72	0.0253	0.5306	LOCAL_REARRANGEMENT:-:[9127],LSM12->LSM12_homolog,chr17:42112003-42144987:-,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	HEC59_ENDOMETRIUM	0.16	0.72	0.5559	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	PTEN--PAPSS2	11	5	PTEN	8443	chr10:89693008:+	PAPSS2	29265	chr10:89475489:+	ONLY_REF_SPLICE	YES	115	122	0.12	0.12	0.139	0.0632	PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog,PAPSS2->3'-phosphoadenosine_5'-phosphosulfate_synthase_2,chr10:89419370-89507462:+	HEC59_ENDOMETRIUM	0.12	0.12	0.2022	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	TGFBR2--AC116035.1	9	11	TGFBR2	1476	chr3:30648469:+	AC116035.1	16787	chr3:30568324:+	ONLY_REF_SPLICE	YES	29	0	0.41	1	0.1137	0.139	LOCAL_REARRANGEMENT:+:[79317],TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,AC116035.1->chr3:30566237-30568677:+	HEC59_ENDOMETRIUM	0.41	1	0.2527	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND4--MT-ATP8	11	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8792	1	0	0.92	0.139	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC59_ENDOMETRIUM	0	0.92	0.1516	FALSE	230	198	14	283	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	TGFBR2--AC116035.1	7	13	TGFBR2	1476	chr3:30648469:+	AC116035.1	15667	chr3:30566199:+	INCL_NON_REF_SPLICE	YES	29	0	0.41	1	0.0884	0.1642	LOCAL_REARRANGEMENT:+:[79317],TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,AC116035.1->chr3:30566237-30568677:+	HEC59_ENDOMETRIUM	0.41	1	0.2526	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	ANXA3--FRAS1	8	4	ANXA3	5625	chr4:79494421:+	FRAS1	80073	chr4:79391132:+	ONLY_REF_SPLICE	YES	127	12	0.09	0.5	0.1011	0.0505	LOCAL_REARRANGEMENT:+:[7250],ANXA3->annexin_A3,chr4:79472673-79531597:+,FRAS1->Fraser_extracellular_matrix_complex_subunit_1,chr4:78978724-79465423:+	HEC59_ENDOMETRIUM	0.09	0.5	0.1516	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	BMPR2--NOP58	8	4	BMPR2	1615	chr2:203242273:+	NOP58	31736	chr2:203142673:+	ONLY_REF_SPLICE	YES	96	335	0.11	0.03	0.1011	0.0505	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[73270],BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+	HEC59_ENDOMETRIUM	0.03	0.11	0.1516	TRUE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	CAPZA2--MET	6	12	CAPZA2	6031	chr7:116520201:+	MET	34809	chr7:116395409:+	ONLY_REF_SPLICE	YES	440	242	0.04	0.07	0.0758	0.1516	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HEC59_ENDOMETRIUM	0.04	0.07	0.2274	TRUE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	CCDC157--MTMR3	8	3	CCDC157	10155	chr22:30770080:+	MTMR3	28136	chr22:30403103:+	ONLY_REF_SPLICE	YES	8	36	0.58	0.23	0.1011	0.0379	CCDC157->chr22:30752624-30774647:+,coiled-coil_domain_containing_157,MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3	HEC59_ENDOMETRIUM	0.23	0.58	0.139	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CCNL2--MRPL20	8	2	CCNL2	2096	chr1:1333613:-	MRPL20	18750	chr1:1337636:-	ONLY_REF_SPLICE	YES	125	300	0.07	0.03	0.1011	0.0253	LOCAL_REARRANGEMENT:-:[2580],CCNL2->chr1:1321091-1334708:-,cyclin_L2,MRPL20->chr1:1337288-1342693:-,mitochondrial_ribosomal_protein_L20	HEC59_ENDOMETRIUM	0.03	0.07	0.1264	TRUE	0	2	0	1	1	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND5--MT-ND6	7	5	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.92	0.0884	0.0632	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HEC59_ENDOMETRIUM	0.92	1	0.1516	FALSE	26	124	4	93	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND6--MT-TE	8	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1011	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC59_ENDOMETRIUM	1	1	0.1011	FALSE	499	1288	110	792	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-TA--MT-TC	7	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0884	0.0379	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC59_ENDOMETRIUM	1	1	0.1263	FALSE	462	80	0	856	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	CAPZA2--MET	3	18	CAPZA2	7095	chr7:116528244:+	MET	26575	chr7:116335804:+	ONLY_REF_SPLICE	YES	946	146	0.02	0.13	0.0379	0.2274	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HEC59_ENDOMETRIUM	0.02	0.13	0.2653	TRUE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	RP11-680G10.1--GSE1	7	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	21	1	0.28	0.0884	0.0126	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEC59_ENDOMETRIUM	0.28	1	0.101	TRUE	458	1351	185	561	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND4--MT-ATP8	6	4	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	10399	0	0	1	0.0758	0.0505	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC59_ENDOMETRIUM	0	1	0.1263	FALSE	231	217	16	283	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	RDX--ZC3H12C	6	3	RDX	4918	chr11:110143261:-	ZC3H12C	32172	chr11:110023644:+	ONLY_REF_SPLICE	YES	165	2	0.05	0.82	0.0758	0.0379	LOCAL_INVERSION:-:+:[3039],RDX->chr11:110045605-110167447:-,radixin,ZC3H12C->chr11:109964087-110042566:+,zinc_finger_CCCH-type_containing_12C	HEC59_ENDOMETRIUM	0.05	0.82	0.1137	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	TGFBR2--AC116035.1	3	15	TGFBR2	2551	chr3:30664765:+	AC116035.1	16787	chr3:30568324:+	ONLY_REF_SPLICE	YES	37	0	0.33	1	0.0379	0.1895	LOCAL_REARRANGEMENT:+:[79317],TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,AC116035.1->chr3:30566237-30568677:+	HEC59_ENDOMETRIUM	0.33	1	0.2274	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	FAM227A--SUN2	6	2	FAM227A	13163	chr22:39016217:-	SUN2	36602	chr22:39148670:-	ONLY_REF_SPLICE	YES	12	25	0.4	0.24	0.0758	0.0253	LOCAL_REARRANGEMENT:-:[78096],FAM227A->chr22:38974125-39052634:-,family_with_sequence_similarity_227_member_A,SUN2->Sad1_and_UNC84_domain_containing_2,chr22:39130730-39190148:-	HEC59_ENDOMETRIUM	0.24	0.4	0.1011	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	ANP32B--SEPT7	6	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0758	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	HEC59_ENDOMETRIUM	1	1	0.0758	TRUE	1	1	0	18	1	TRUE	ACH-000994
HEC59_ENDOMETRIUM	HECTD1--HEATR5A	6	0	HECTD1	43708	chr14:31569829:-	HEATR5A	66950	chr14:31817113:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0758	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_REARRANGEMENT:-:[83984],HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,HEATR5A->HEAT_repeat_containing_5A,chr14:31760994-31889788:-	HEC59_ENDOMETRIUM	1	1	0.0758	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND6--MT-TE	6	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0758	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC59_ENDOMETRIUM	1	1	0.0758	FALSE	499	1288	110	792	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	LSM12--HDAC5	1	18	LSM12	3290	chr17:42141169:-	HDAC5	22454	chr17:42162523:-	ONLY_REF_SPLICE	NO	227	76	0.08	0.2	0.0126	0.2274	LOCAL_REARRANGEMENT:-:[9127],LSM12->LSM12_homolog,chr17:42112003-42144987:-,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	HEC59_ENDOMETRIUM	0.08	0.2	0.24	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CAPZA2--MET	1	17	CAPZA2	7095	chr7:116528244:+	MET	27625	chr7:116339125:+	ONLY_REF_SPLICE	YES	946	131	0.02	0.12	0.0126	0.2148	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HEC59_ENDOMETRIUM	0.02	0.12	0.2274	TRUE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	HSP90AB1--MT-RNR2	5	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2952	0	0	1	0.0632	0.0126	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEC59_ENDOMETRIUM	0	1	0.0758	FALSE	13	9	0	364	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	LINC00511--SLC39A11	5	1	LINC00511	8867	chr17:70588342:-	SLC39A11	52513	chr17:70645407:-	ONLY_REF_SPLICE	YES	119	36	0.05	0.14	0.0632	0.0126	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	HEC59_ENDOMETRIUM	0.05	0.14	0.0758	TRUE	0	1	0	5	1	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND4--MT-ATP8	5	1	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9876	30	0	0.17	0.0632	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC59_ENDOMETRIUM	0	0.17	0.0758	FALSE	231	217	16	283	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND4--MT-ATP8	5	1	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1768	30	0	0.17	0.0632	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC59_ENDOMETRIUM	0	0.17	0.0758	FALSE	216	209	16	281	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	CAMKMT--SLC3A1	4	4	CAMKMT	4731	chr2:44617444:+	SLC3A1	29491	chr2:44507855:+	ONLY_REF_SPLICE	YES	40	30	0.17	0.21	0.0505	0.0505	LOCAL_REARRANGEMENT:+:[40456],CAMKMT->calmodulin-lysine_N-methyltransferase,chr2:44589089-44999731:+,SLC3A1->chr2:44502599-44548633:+,solute_carrier_family_3_member_1	HEC59_ENDOMETRIUM	0.17	0.21	0.101	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CTB-35F21.1--PAIP2	5	0	CTB-35F21.1	2853	chr5:139101552:+	PAIP2	11996	chr5:138699448:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0632	0	CTB-35F21.1->chr5:139064230-139124595:+,PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2	HEC59_ENDOMETRIUM	1	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	MT-ATP6--MT-CO2	4	3	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	26	1	0.21	0.88	0.0505	0.0379	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC59_ENDOMETRIUM	0.21	0.88	0.0884	FALSE	59	21	0	114	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND4--MT-ATP8	4	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10406	1	0	0.88	0.0505	0.0379	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC59_ENDOMETRIUM	0	0.88	0.0884	FALSE	231	217	16	283	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND4--MT-ATP8	3	7	MT-ND4	2258	chrM:12017:+	MT-ATP8	5406	chrM:8393:+	INCL_NON_REF_SPLICE	YES	1270	0	0.01	1	0.0379	0.0884	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC59_ENDOMETRIUM	0.01	1	0.1263	FALSE	216	209	16	281	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	CAPZA2--MET	4	2	CAPZA2	3371	chr7:116502704:+	MET	35970	chr7:116397491:+	ONLY_REF_SPLICE	YES	202	277	0.03	0.02	0.0505	0.0253	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HEC59_ENDOMETRIUM	0.02	0.03	0.0758	TRUE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	ADARB1--SNCA	4	1	ADARB1	1941	chr21:46494708:+	SNCA	35784	chr4:90756843:-	ONLY_REF_SPLICE	YES	1	7	0.83	0.42	0.0505	0.0126	ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+,SNCA->chr4:90645250-90759466:-,synuclein_alpha	HEC59_ENDOMETRIUM	0.42	0.83	0.0631	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	LSM12--HDAC5	4	1	LSM12	3290	chr17:42141169:-	HDAC5	26727	chr17:42158250:-	ONLY_REF_SPLICE	YES	227	72	0.02	0.06	0.0505	0.0126	LOCAL_REARRANGEMENT:-:[9127],LSM12->LSM12_homolog,chr17:42112003-42144987:-,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	HEC59_ENDOMETRIUM	0.02	0.06	0.0631	TRUE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND4--MT-ATP8	4	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10648	1	0	0.83	0.0505	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC59_ENDOMETRIUM	0	0.83	0.0631	FALSE	231	205	14	283	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND5--MT-ND6	3	5	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	2328	1	0	0.0379	0.0632	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HEC59_ENDOMETRIUM	0	1	0.1011	FALSE	26	124	4	93	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	CDK17--C12orf55	1	12	CDK17	2227	chr12:96793112:-	C12orf55	28219	chr12:96894612:+	ONLY_REF_SPLICE	NO	74	8	0.15	0.62	0.0126	0.1516	LOCAL_INVERSION:-:+:[89011],CDK17->chr12:96672039-96794338:-,cyclin-dependent_kinase_17,C12orf55->chr12:96883349-97269333:+	HEC59_ENDOMETRIUM	0.15	0.62	0.1642	TRUE	0	0	0	2	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	COL18A1--ADARB1	3	4	COL18A1	1337	chr21:46825388:+	ADARB1	63266	chr21:46641933:+	ONLY_REF_SPLICE	YES	525	30	0.01	0.19	0.0379	0.0505	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},COL18A1->chr21:46825052-46933634:+,collagen_type_XVIII_alpha_1,ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+	HEC59_ENDOMETRIUM	0.01	0.19	0.0884	FALSE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	PXN--MSI1	3	4	PXN	1155	chr12:120703420:-	MSI1	23493	chr12:120806676:-	ONLY_REF_SPLICE	YES	39	3	0.15	0.7	0.0379	0.0505	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[75559],PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,MSI1->chr12:120779133-120806983:-,musashi_RNA_binding_protein_1	HEC59_ENDOMETRIUM	0.15	0.7	0.0884	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND4--MT-ATP8	3	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	12194	0	0	1	0.0379	0.0379	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC59_ENDOMETRIUM	0	1	0.0758	FALSE	231	217	16	283	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	ST7--MET	3	3	ST7	1454	chr7:116593745:+	MET	40600	chr7:116339125:+	ONLY_REF_SPLICE	YES	64	131	0.09	0.04	0.0379	0.0379	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1],ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HEC59_ENDOMETRIUM	0.04	0.09	0.0758	TRUE	0	2	0	2	2	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CAPZA2--MET	1	10	CAPZA2	3371	chr7:116502704:+	MET	31541	chr7:116371722:+	ONLY_REF_SPLICE	YES	202	343	0.05	0.03	0.0126	0.1263	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HEC59_ENDOMETRIUM	0.03	0.05	0.1389	TRUE	0	0	0	2	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	CD44--PDHX	3	2	CD44	4202	chr11:35201954:+	PDHX	33796	chr11:34969053:+	ONLY_REF_SPLICE	YES	654	126	0.01	0.04	0.0379	0.0253	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HEC59_ENDOMETRIUM	0.01	0.04	0.0632	FALSE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND4--MT-ATP8	3	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	11896	0	0	1	0.0379	0.0253	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC59_ENDOMETRIUM	0	1	0.0632	FALSE	231	205	14	283	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND4--MT-ATP8	3	2	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	5180	0	0	1	0.0379	0.0253	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC59_ENDOMETRIUM	0	1	0.0632	FALSE	230	193	14	283	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	AL121578.2--CYBB	3	1	AL121578.2	3710	chrX:37808658:+	CYBB	19849	chrX:37668820:+	ONLY_REF_SPLICE	YES	0	4	1	0.5	0.0379	0.0126	LOCAL_REARRANGEMENT:+:[92686],AL121578.2->chrX:37765400-37808658:+,CYBB->chrX:37639264-37672714:+,cytochrome_b-245,_beta_polypeptide	HEC59_ENDOMETRIUM	0.5	1	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2977	0	0	1	0.0379	0.0126	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEC59_ENDOMETRIUM	0	1	0.0505	FALSE	13	9	0	364	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND4--MT-ATP8	3	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	8709	1	0	0.8	0.0379	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC59_ENDOMETRIUM	0	0.8	0.0505	FALSE	230	193	14	283	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	LPHN2--AC079305.11	3	0	LPHN2	6881	chr1:82165493:+	AC079305.11	44597	chr2:177959356:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0379	0	LPHN2->Oncogene{Bushman},chr1:81771845-82458120:+,AC079305.11->chr2:177855236-178029244:-	HEC59_ENDOMETRIUM	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND4--MT-ATP8	3	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC59_ENDOMETRIUM	1	1	0.0379	FALSE	230	198	14	283	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND4--MT-ATP8	3	0	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC59_ENDOMETRIUM	1	1	0.0379	FALSE	231	217	16	283	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC59_ENDOMETRIUM	1	1	0.0379	FALSE	231	204	14	283	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC59_ENDOMETRIUM	1	1	0.0379	FALSE	499	1288	110	792	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	RP11-120D5.1--MID1	3	0	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEC59_ENDOMETRIUM	1	1	0.0379	FALSE	0	9	0	55	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	LSM12--HDAC5	2	3	LSM12	3290	chr17:42141169:-	HDAC5	24789	chr17:42160188:-	ONLY_REF_SPLICE	YES	227	77	0.02	0.06	0.0253	0.0379	LOCAL_REARRANGEMENT:-:[9127],LSM12->LSM12_homolog,chr17:42112003-42144987:-,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	HEC59_ENDOMETRIUM	0.02	0.06	0.0632	TRUE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	SLC25A13--SHFM1	2	3	SLC25A13	4550	chr7:95906508:-	SHFM1	36853	chr7:96136010:-	ONLY_REF_SPLICE	YES	167	0	0.03	1	0.0253	0.0379	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Spleen=1},SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	HEC59_ENDOMETRIUM	0.03	1	0.0632	TRUE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	ST7--MET	2	3	ST7	1454	chr7:116593745:+	MET	44516	chr7:116371722:+	ONLY_REF_SPLICE	YES	64	343	0.07	0.01	0.0253	0.0379	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1],ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HEC59_ENDOMETRIUM	0.01	0.07	0.0632	FALSE	0	1	0	3	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	SWI5--RP11-379C10.1	2	3	SWI5	5642	chr9:131048312:+	RP11-379C10.1	11690	chr9:130801586:-	ONLY_REF_SPLICE	YES	105	0	0.05	1	0.0253	0.0379	SWI5->SWI5_homologous_recombination_repair_protein,chr9:131037658-131051269:+,RP11-379C10.1->chr9:130801414-130819641:-	HEC59_ENDOMETRIUM	0.05	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CBLC--CEACAM16	1	6	CBLC	5135	chr19:45287658:+	CEACAM16	15630	chr19:45206619:+	ONLY_REF_SPLICE	YES	20	0	0.26	1	0.0126	0.0758	LOCAL_REARRANGEMENT:+:[67140],CBLC->Cbl_proto-oncogene_C,Oncogene{Bushman},chr19:45281126-45303891:+,CEACAM16->carcinoembryonic_antigen_related_cell_adhesion_molecule_16,chr19:45202421-45213986:+	HEC59_ENDOMETRIUM	0.26	1	0.0884	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CCNL2--MRPL20	2	2	CCNL2	2096	chr1:1333613:-	MRPL20	18405	chr1:1337981:-	ONLY_REF_SPLICE	YES	125	327	0.03	0.01	0.0253	0.0253	LOCAL_REARRANGEMENT:-:[2580],CCNL2->chr1:1321091-1334708:-,cyclin_L2,MRPL20->chr1:1337288-1342693:-,mitochondrial_ribosomal_protein_L20	HEC59_ENDOMETRIUM	0.01	0.03	0.0506	FALSE	0	2	0	1	1	FALSE	ACH-000994
HEC59_ENDOMETRIUM	RDX--ZC3H12C	2	2	RDX	4918	chr11:110143261:-	ZC3H12C	33312	chr11:110029981:+	ONLY_REF_SPLICE	YES	165	0	0.02	1	0.0253	0.0253	LOCAL_INVERSION:-:+:[3039],RDX->chr11:110045605-110167447:-,radixin,ZC3H12C->chr11:109964087-110042566:+,zinc_finger_CCCH-type_containing_12C	HEC59_ENDOMETRIUM	0.02	1	0.0506	TRUE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	FAM168A--RAB6A	1	5	FAM168A	1267	chr11:73308968:-	RAB6A	21682	chr11:73441868:-	ONLY_REF_SPLICE	YES	90	137	0.06	0.04	0.0126	0.0632	LOCAL_REARRANGEMENT:-:[77449],FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A,RAB6A->RAB6A,_member_RAS_oncogene_family,chr11:73386683-73472182:-	HEC59_ENDOMETRIUM	0.04	0.06	0.0758	TRUE	0	1	0	4	1	FALSE	ACH-000994
HEC59_ENDOMETRIUM	LNPEP--CAST	2	1	LNPEP	18307	chr5:96350799:+	CAST	68498	chr5:96093148:+	ONLY_REF_SPLICE	YES	54	103	0.05	0.03	0.0253	0.0126	GTEx_v2:{count=1;pct=0.01%;dist=Minor_Salivary_Gland=1},LNPEP->Oncogene{Bushman},chr5:96271098-96373219:+,leucyl/cystinyl_aminopeptidase,CAST->calpastatin,chr5:95860971-96115299:+	HEC59_ENDOMETRIUM	0.03	0.05	0.0379	TRUE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	RIC8B--RFX4	2	1	RIC8B	8866	chr12:107219598:+	RFX4	33263	chr12:107033110:+	ONLY_REF_SPLICE	YES	62	1	0.05	0.75	0.0253	0.0126	LOCAL_REARRANGEMENT:+:[11792],RIC8B->RIC8_guanine_nucleotide_exchange_factor_B,chr12:107168373-107283090:+,RFX4->chr12:106976685-107156581:+,regulatory_factor_X4	HEC59_ENDOMETRIUM	0.05	0.75	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	28	1	0.1	0.0253	0.0126	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEC59_ENDOMETRIUM	0.1	1	0.0379	TRUE	465	1949	224	605	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	STON2--SEL1L	2	1	STON2	8488	chr14:81837332:-	SEL1L	25070	chr14:81972585:-	ONLY_REF_SPLICE	YES	39	101	0.07	0.03	0.0253	0.0126	LOCAL_REARRANGEMENT:-:[35084],STON2->chr14:81727000-81902809:-,stonin_2,SEL1L->Oncogene{Bushman},SEL1L_ERAD_E3_ligase_adaptor_subunit,chr14:81937893-82000205:-	HEC59_ENDOMETRIUM	0.03	0.07	0.0379	TRUE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	DCAF6--TIPRL	2	0	DCAF6	3532	chr1:167921099:+	TIPRL	37985	chr1:168165785:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	DCAF6->DDB1_and_CUL4_associated_factor_6,chr1:167905021-168045081:+,TIPRL->TOR_signaling_pathway_regulator,chr1:168148171-168169950:+	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	FAM63B--LIPC	2	0	FAM63B	2044	chr15:59064434:+	LIPC	24871	chr15:58724192:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	FAM63B->chr15:59063391-59154099:+,family_with_sequence_similarity_63_member_B,LIPC->chr15:58702768-58861151:+,lipase_C,_hepatic_type	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	GPC4--GPC3	2	0	GPC4	1685	chrX:132548834:-	GPC3	18198	chrX:132888203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},HGNC_GENEFAM,PROTCLUST,{Klijn_CCL:Ovary=1,Other=1},GPC4->chrX:132434131-132549518:-,glypican_4,GPC3->Oncogene{Bushman},chrX:132669773-133119922:-,glypican_3	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	1	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	KDELC2--MDM2	2	0	KDELC2	8966	chr11:108348751:-	MDM2	22729	chr12:69214105:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	KDELC2->KDEL_motif_containing_2,chr11:108342832-108369159:-,MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	0	0	2	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	PBXIP1--RP11-201K10.3	2	0	PBXIP1	5820	chr1:154919893:-	RP11-201K10.3	13210	chr1:155145950:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	PBXIP1->chr1:154916552-154928599:-,pre-B-cell_leukemia_homeobox_interacting_protein_1,RP11-201K10.3->chr1:155141885-155159748:-	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	RDX--ZC3H12C	2	0	RDX	4918	chr11:110143261:-	ZC3H12C	34547	chr11:110033998:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	LOCAL_INVERSION:-:+:[3039],RDX->chr11:110045605-110167447:-,radixin,ZC3H12C->chr11:109964087-110042566:+,zinc_finger_CCCH-type_containing_12C	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	RP11-120D5.1--MID1	2	0	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEC59_ENDOMETRIUM	1	1	0.0253	FALSE	2	31	0	60	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEC59_ENDOMETRIUM	1	1	0.0253	FALSE	16	356	14	466	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	RPS6KB1--VMP1	2	0	RPS6KB1	7326	chr17:57992064:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	4	0	3	2	TRUE	ACH-000994
HEC59_ENDOMETRIUM	WDHD1--DLGAP5	2	0	WDHD1	2507	chr14:55480203:-	DLGAP5	44227	chr14:55625459:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-,DLGAP5->chr14:55614830-55658396:-,discs_large_homolog_associated_protein_5	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	WDR46--PIGS	2	0	WDR46	1426	chr6:33256879:-	PIGS	19317	chr17:26882079:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	WDR46->WD_repeat_domain_46,chr6:33246885-33257304:-,PIGS->chr17:26880401-26898890:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_S	HEC59_ENDOMETRIUM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	ZBTB20--LSAMP	1	3	ZBTB20	4428	chr3:114790066:-	LSAMP	53449	chr3:115571464:-	ONLY_REF_SPLICE	NO	5	0	0.44	1	0.0126	0.0379	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1|PRAD:1],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	HEC59_ENDOMETRIUM	0.44	1	0.0505	TRUE	0	0	0	2	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	CAPZA2--MET	1	2	CAPZA2	3371	chr7:116502704:+	MET	44445	chr7:116417443:+	ONLY_REF_SPLICE	NO	202	299	0.01	0.01	0.0126	0.0253	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HEC59_ENDOMETRIUM	0.01	0.01	0.0379	FALSE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	CRLF3--AC091177.1	1	2	CRLF3	8728	chr17:29120468:-	AC091177.1	21957	chr17:29283622:-	ONLY_REF_SPLICE	YES	36	1	0.08	0.75	0.0126	0.0253	CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3,AC091177.1->chr17:29283298-29283979:-	HEC59_ENDOMETRIUM	0.08	0.75	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	LINC00511--SLC39A11	1	2	LINC00511	8867	chr17:70588342:-	SLC39A11	49102	chr17:70732858:-	ONLY_REF_SPLICE	NO	119	30	0.02	0.09	0.0126	0.0253	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	HEC59_ENDOMETRIUM	0.02	0.09	0.0379	TRUE	0	5	0	7	4	TRUE	ACH-000994
HEC59_ENDOMETRIUM	AC002066.1--AC073130.1	1	1	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0126	0.0126	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	HEC59_ENDOMETRIUM	1	1	0.0252	FALSE	0	1	1	30	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	AL121578.2--CYBB	1	1	AL121578.2	2571	chrX:37798942:+	CYBB	19849	chrX:37668820:+	ONLY_REF_SPLICE	YES	7	4	0.22	0.33	0.0126	0.0126	LOCAL_REARRANGEMENT:+:[92686],AL121578.2->chrX:37765400-37808658:+,CYBB->chrX:37639264-37672714:+,cytochrome_b-245,_beta_polypeptide	HEC59_ENDOMETRIUM	0.22	0.33	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000994
HEC59_ENDOMETRIUM	BMPR2--NOP58	1	1	BMPR2	1615	chr2:203242273:+	NOP58	33116	chr2:203147074:+	ONLY_REF_SPLICE	NO	96	320	0.02	0.01	0.0126	0.0126	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[73270],BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+	HEC59_ENDOMETRIUM	0.01	0.02	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	BRE--SLC4A1AP	1	1	BRE	5581	chr2:28152775:+	SLC4A1AP	28556	chr2:27898399:+	ONLY_REF_SPLICE	NO	112	81	0.02	0.02	0.0126	0.0126	BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+,SLC4A1AP->chr2:27886338-27917840:+,solute_carrier_family_4_member_1_adaptor_protein	HEC59_ENDOMETRIUM	0.02	0.02	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	C11orf30--PRKRIR	1	1	C11orf30	12284	chr11:76183884:+	PRKRIR	46110	chr11:76066698:-	ONLY_REF_SPLICE	NO	17	99	0.11	0.02	0.0126	0.0126	LOCAL_INVERSION:+:-:[63952],C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+,PRKRIR->chr11:76061000-76092015:-	HEC59_ENDOMETRIUM	0.02	0.11	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	DYNC1H1--HSP90AA1	1	1	DYNC1H1	16342	chr14:102466736:+	HSP90AA1	65337	chr14:102548781:-	ONLY_REF_SPLICE	YES	118	3310	0.02	0	0.0126	0.0126	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cortex=1},LOCAL_INVERSION:+:-:[29946],DYNC1H1->chr14:102430865-102517129:+,dynein_cytoplasmic_1_heavy_chain_1,HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1	HEC59_ENDOMETRIUM	0	0.02	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	GCDH--ASNA1	1	1	GCDH	5239	chr19:13007235:+	ASNA1	16138	chr19:12856191:+	ONLY_REF_SPLICE	YES	78	339	0.03	0.01	0.0126	0.0126	GCDH->chr19:13001840-13025021:+,glutaryl-CoA_dehydrogenase,ASNA1->arsA_arsenite_transporter,_ATP-binding,_homolog_1_(bacterial),chr19:12847953-12859137:+	HEC59_ENDOMETRIUM	0.01	0.03	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	H2AFV--SIRT5	1	1	H2AFV	4437	chr7:44875128:-	SIRT5	14273	chr6:13579683:+	ONLY_REF_SPLICE	YES	820	0	0	1	0.0126	0.0126	H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-,SIRT5->chr6:13574816-13614790:+,sirtuin_5	HEC59_ENDOMETRIUM	0	1	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0126	0.0126	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC59_ENDOMETRIUM	0.67	1	0.0252	FALSE	292	1546	117	613	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	PPP3CC--XPO7	1	1	PPP3CC	3311	chr8:22333137:+	XPO7	23779	chr8:21824368:+	ONLY_REF_SPLICE	YES	78	3	0.03	0.4	0.0126	0.0126	PPP3CC->chr8:22298332-22398652:+,protein_phosphatase_3_catalytic_subunit_gamma,XPO7->chr8:21777180-21864096:+,exportin_7	HEC59_ENDOMETRIUM	0.03	0.4	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	SAP30BP--SMIM5	1	1	SAP30BP	3558	chr17:73667943:+	SMIM5	19324	chr17:73630114:+	ONLY_REF_SPLICE	NO	152	1	0.01	0.67	0.0126	0.0126	LOCAL_REARRANGEMENT:+:[25712],SAP30BP->SAP30_binding_protein,chr17:73663196-73704142:+,SMIM5->chr17:73629514-73637484:+,small_integral_membrane_protein_5	HEC59_ENDOMETRIUM	0.01	0.67	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	SLC3A1--PPM1B	1	1	SLC3A1	11709	chr2:44541090:+	PPM1B	24102	chr2:44436349:+	ONLY_REF_SPLICE	NO	40	418	0.05	0	0.0126	0.0126	LOCAL_REARRANGEMENT:+:[31076],SLC3A1->chr2:44502599-44548633:+,solute_carrier_family_3_member_1,PPM1B->chr2:44395108-44471523:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1B	HEC59_ENDOMETRIUM	0	0.05	0.0252	FALSE	0	1	0	1	1	FALSE	ACH-000994
HEC59_ENDOMETRIUM	ST7--MET	1	1	ST7	11721	chr7:116759774:+	MET	45708	chr7:116380004:+	ONLY_REF_SPLICE	YES	63	269	0.03	0.01	0.0126	0.0126	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1],ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	HEC59_ENDOMETRIUM	0.01	0.03	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000994
HEC59_ENDOMETRIUM	STON2--SEL1L	1	1	STON2	8488	chr14:81837332:-	SEL1L	23838	chr14:81993308:-	ONLY_REF_SPLICE	YES	39	140	0.05	0.01	0.0126	0.0126	LOCAL_REARRANGEMENT:-:[35084],STON2->chr14:81727000-81902809:-,stonin_2,SEL1L->Oncogene{Bushman},SEL1L_ERAD_E3_ligase_adaptor_subunit,chr14:81937893-82000205:-	HEC59_ENDOMETRIUM	0.01	0.05	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000994
LS123_LARGE_INTESTINE	HSPBP1--GRK5	86	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2966	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	LS123_LARGE_INTESTINE	1	1	1.2966	TRUE	1	39	0	134	39	FALSE	ACH-000501
LS123_LARGE_INTESTINE	TIMM23B--LINC00843	60	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9046	0.3015	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LS123_LARGE_INTESTINE	1	1	1.2061	TRUE	508	994	45	981	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	209	MT-ND4	1754	chrM:11513:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	YES	9027	0	0.02	1	0.0603	3.151	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.02	1	3.2113	FALSE	344	827	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	203	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	26	0	0.89	1	0.0754	3.0605	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.89	1	3.1359	FALSE	344	826	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	205	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	68	0	0.75	1	0.0603	3.0907	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.75	1	3.151	FALSE	344	827	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	19	141	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	10925	0	0.01	1	0.2865	2.1258	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.01	1	2.4123	FALSE	344	827	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	205	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	NO	44	0	0.83	1	0.0452	3.0907	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.83	1	3.1359	FALSE	344	826	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	202	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	22	0	0.9	1	0.0452	3.0455	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.9	1	3.0907	FALSE	344	826	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	197	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	13	0	0.94	1	0.0452	2.9701	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.94	1	3.0153	FALSE	344	826	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND6--MT-TE	50	8	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.7538	0.1206	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS123_LARGE_INTESTINE	0.98	1	0.8744	FALSE	499	1288	110	792	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	167	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	6	0	0.97	1	0.0603	2.5178	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.97	1	2.5781	FALSE	344	826	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	145	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	7	0	0.96	1	0.0754	2.1861	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.96	1	2.2615	FALSE	344	821	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	153	MT-ND4	1475	chrM:11234:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	1051	0	0.13	1	0.0452	2.3067	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.13	1	2.3519	FALSE	344	827	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	145	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	14	0	0.91	1	0.0603	2.1861	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.91	1	2.2464	FALSE	344	826	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-TA--MT-TC	37	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5578	0.0905	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS123_LARGE_INTESTINE	1	1	0.6483	FALSE	462	80	0	856	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	135	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	193	0	0.42	1	0.0603	2.0353	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.42	1	2.0956	FALSE	344	827	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	TIMM23--RP11-464F9.1	34	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	178	2	0.18	0.95	0.5126	0.0754	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LS123_LARGE_INTESTINE	0.18	0.95	0.588	TRUE	519	3926	326	965	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	30	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4523	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	1	1	0.4523	FALSE	230	193	14	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	17	51	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	17225	0	0	1	0.2563	0.7689	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0	1	1.0252	FALSE	328	800	43	304	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	27	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4071	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	1	1	0.4071	FALSE	230	198	14	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND6--MT-TE	23	9	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.3468	0.1357	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS123_LARGE_INTESTINE	0.97	1	0.4825	FALSE	499	1288	110	792	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MTHFD1L--CEP85L	21	9	MTHFD1L	28824	chr6:151336116:+	CEP85L	51738	chr6:118845083:-	ONLY_REF_SPLICE	YES	40	3	0.43	0.91	0.3166	0.1357	MTHFD1L->chr6:151186685-151423023:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_1-like,CEP85L->centrosomal_protein_85_like,chr6:118781935-119031238:-	LS123_LARGE_INTESTINE	0.43	0.91	0.4523	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	KANSL1--ARL17B	19	14	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	13	21	0.72	0.61	0.2865	0.2111	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	LS123_LARGE_INTESTINE	0.61	0.72	0.4976	TRUE	181	1564	124	196	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND6--MT-TE	17	18	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.2563	0.2714	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS123_LARGE_INTESTINE	0.95	1	0.5277	FALSE	499	1288	110	792	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	72	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	9	0	0.89	1	0.0452	1.0855	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.89	1	1.1307	FALSE	344	826	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	61	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0603	0.9197	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.98	1	0.98	FALSE	344	821	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	ZNF654--HMGB2	19	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2865	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LS123_LARGE_INTESTINE	1	1	0.2865	TRUE	0	0	0	518	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	16	8	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	23927	8	0	0.75	0.2412	0.1206	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	0.75	0.3618	FALSE	231	217	16	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND3--MT-ATP8	16	0	MT-ND3	1222	chrM:10280:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2412	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	1	1	0.2412	FALSE	351	233	23	137	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	33	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1105	0	0.03	1	0.1055	0.4975	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.03	1	0.603	FALSE	344	827	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND6--MT-TE	6	31	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0905	0.4674	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS123_LARGE_INTESTINE	0.95	1	0.5579	FALSE	499	1288	110	792	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND6--MT-TE	8	22	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1206	0.3317	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS123_LARGE_INTESTINE	0.97	1	0.4523	FALSE	499	1288	110	792	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	HSP90AB1--MT-RNR2	13	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.196	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LS123_LARGE_INTESTINE	1	1	0.196	FALSE	13	9	0	364	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	9	16	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	166	0	0.13	1	0.1357	0.2412	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.13	1	0.3769	FALSE	344	827	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	12	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1809	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	1	1	0.1809	FALSE	231	204	14	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	27	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	44	0	0.42	1	0.0754	0.4071	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.42	1	0.4825	FALSE	344	826	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND3--MT-ATP8	11	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1658	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	1	1	0.1658	FALSE	351	233	23	137	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	32	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	64	0	0.35	1	0.0452	0.4824	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.35	1	0.5276	FALSE	344	826	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-RNR2	9	8	MT-ND4	2320	chrM:12079:+	MT-RNR2	5386	chrM:1678:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1357	0.1206	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LS123_LARGE_INTESTINE	0.94	1	0.2563	FALSE	13	18	3	21	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND6--MT-TE	3	31	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0452	0.4674	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS123_LARGE_INTESTINE	0.92	1	0.5126	FALSE	499	1288	110	792	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	RP11-123O10.4--GRIP1	10	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1508	0.0452	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LS123_LARGE_INTESTINE	1	1	0.196	FALSE	416	2512	207	587	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	10	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	23877	0	0	1	0.1508	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	1	0.181	FALSE	231	217	16	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	7	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22890	46	0	0.25	0.1206	0.1055	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	0.25	0.2261	FALSE	231	217	16	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	9	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	24001	0	0	1	0.1055	0.1357	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	1	0.2412	FALSE	231	217	16	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	9	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	23779	0	0	1	0.1055	0.1357	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	1	0.2412	FALSE	231	217	16	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1357	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	1	1	0.1357	FALSE	231	205	14	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	6	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	23713	1630	0	0.01	0.0905	0.0905	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	0.01	0.181	FALSE	231	217	16	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	23877	0	0	1	0.1055	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	1	0.1357	FALSE	231	217	16	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	CEP85L--STXBP5-AS1	6	5	CEP85L	19463	chr6:118801034:-	STXBP5-AS1	38553	chr6:147322679:-	ONLY_REF_SPLICE	YES	6	0	0.65	1	0.0905	0.0754	CEP85L->centrosomal_protein_85_like,chr6:118781935-119031238:-,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	LS123_LARGE_INTESTINE	0.65	1	0.1659	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	9	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6800	46	0	0.23	0.0754	0.1357	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	0.23	0.2111	FALSE	218	210	16	281	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	9	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3425	46	0	0.23	0.0754	0.1357	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	0.23	0.2111	FALSE	216	209	16	281	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	22890	2025	0	0	0.0905	0.0603	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	0	0.1508	FALSE	231	217	16	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	16	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	166	0	0.1	1	0.0452	0.2412	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.1	1	0.2864	FALSE	344	827	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	16	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	47	0	0.29	1	0.0452	0.2412	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.29	1	0.2864	FALSE	344	826	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1055	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LS123_LARGE_INTESTINE	1	1	0.1055	FALSE	292	1546	117	613	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	3	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	26015	811	0	0.01	0.0905	0.0452	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	0.01	0.1357	FALSE	231	217	16	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-TA--MT-TC	5	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0754	0.1055	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS123_LARGE_INTESTINE	1	1	0.1809	FALSE	462	80	0	856	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	IFI27--MT-ND4L	6	1	IFI27	8929	chr14:94582869:+	MT-ND4L	12095	chrM:10471:+	INCL_NON_REF_SPLICE	YES	857	0	0.01	1	0.0905	0.0151	IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.01	1	0.1056	FALSE	0	0	0	13	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-RNR2	6	1	MT-ND4	1209	chrM:10968:+	MT-RNR2	5415	chrM:1707:+	INCL_NON_REF_SPLICE	NO	18091	0	0	1	0.0905	0.0151	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LS123_LARGE_INTESTINE	0	1	0.1056	FALSE	13	19	3	21	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-RNR2	6	1	MT-ND4	1253	chrM:11012:+	MT-RNR2	5441	chrM:1733:+	INCL_NON_REF_SPLICE	YES	19045	0	0	1	0.0905	0.0151	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LS123_LARGE_INTESTINE	0	1	0.1056	FALSE	13	19	3	21	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	0	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0905	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	1	1	0.0905	FALSE	230	197	14	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0905	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	1	1	0.0905	FALSE	230	193	14	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0754	0.0603	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	1	1	0.1357	FALSE	344	821	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	7	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	22941	0	0	1	0.0603	0.1055	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	1	0.1658	FALSE	231	217	16	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-TA--MT-TC	5	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0754	0.0302	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS123_LARGE_INTESTINE	1	1	0.1056	FALSE	462	80	0	856	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	9	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	23622	0	0	1	0.0452	0.1357	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	1	0.1809	FALSE	231	217	16	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	9	MT-ND4	1776	chrM:11535:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	23929	0	0	1	0.0452	0.1357	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	1	0.1809	FALSE	231	217	16	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	5	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	25651	46	0	0.16	0.0603	0.0754	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	0.16	0.1357	FALSE	231	217	16	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-RNR2	5	1	MT-ND4	1201	chrM:10960:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	17485	0	0	1	0.0754	0.0151	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LS123_LARGE_INTESTINE	0	1	0.0905	FALSE	13	19	3	21	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	C15orf57--CBX3	4	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	12	24	0.4	0.25	0.0603	0.0603	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LS123_LARGE_INTESTINE	0.25	0.4	0.1206	TRUE	267	562	48	632	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0754	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	1	1	0.0754	FALSE	231	204	14	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0754	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	1	1	0.0754	FALSE	230	198	14	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0754	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS123_LARGE_INTESTINE	1	1	0.0754	FALSE	499	1288	110	792	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	C15orf57--CBX3	3	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	14	24	0.42	0.29	0.0452	0.1055	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LS123_LARGE_INTESTINE	0.29	0.42	0.1507	TRUE	267	562	48	632	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	3	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	26350	46	0	0.13	0.0603	0.0452	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	0.13	0.1055	FALSE	231	217	16	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	7	MT-ND4	1754	chrM:11513:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	23316	72	0	0.12	0.0452	0.1055	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	0.12	0.1507	FALSE	231	217	16	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	CEP85L--STXBP5-AS1	3	6	CEP85L	20571	chr6:118791700:-	STXBP5-AS1	38553	chr6:147322679:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0452	0.0905	CEP85L->centrosomal_protein_85_like,chr6:118781935-119031238:-,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	LS123_LARGE_INTESTINE	0.9	1	0.1357	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	2	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	23970	0	0	1	0.0603	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	0	1	0.0905	FALSE	231	217	16	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	2	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0603	0.0302	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.75	1	0.0905	FALSE	344	821	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	RP11-123O10.4--GRIP1	4	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0603	0.0302	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LS123_LARGE_INTESTINE	1	1	0.0905	FALSE	93	270	15	244	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MIR205HG--C9orf3	4	1	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	131	249	0.04	0.02	0.0603	0.0151	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	LS123_LARGE_INTESTINE	0.02	0.04	0.0754	TRUE	86	303	14	25	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-RNR2	4	1	MT-ND4	1209	chrM:10968:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	18091	0	0	1	0.0603	0.0151	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LS123_LARGE_INTESTINE	0	1	0.0754	FALSE	13	19	3	21	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND5--MT-ND6	3	5	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0.0754	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	LS123_LARGE_INTESTINE	1	1	0.1206	FALSE	26	124	4	93	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0603	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LS123_LARGE_INTESTINE	1	1	0.0603	FALSE	13	9	0	364	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0603	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	1	1	0.0603	FALSE	230	193	14	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	0	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0603	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	1	1	0.0603	FALSE	231	204	14	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-RNR2	4	0	MT-ND4	1245	chrM:11004:+	MT-RNR2	5925	chrM:2217:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0603	0	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LS123_LARGE_INTESTINE	1	1	0.0603	FALSE	13	19	3	21	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND5--MT-ND6	3	4	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	4668	1	0	0.0452	0.0603	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	LS123_LARGE_INTESTINE	0	1	0.1055	FALSE	26	124	4	93	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0.0603	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS123_LARGE_INTESTINE	1	1	0.1055	FALSE	462	80	0	856	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MYBL2--MT-CO1	4	0	MYBL2	11707	chr20:42338696:+	MT-CO1	19813	chrM:6421:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0603	0	MYBL2->MYB_proto-oncogene_like_2,Oncogene{Bushman},chr20:42295754-42345136:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LS123_LARGE_INTESTINE	1	1	0.0603	FALSE	0	0	0	1	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	3	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	3	0	0.67	1	0.0452	0.0452	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS123_LARGE_INTESTINE	0.67	1	0.0904	FALSE	344	821	44	306	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-RNR2	3	3	MT-ND4	2345	chrM:12104:+	MT-RNR2	6029	chrM:2321:+	INCL_NON_REF_SPLICE	NO	0	13339	1	0	0.0452	0.0452	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LS123_LARGE_INTESTINE	0	1	0.0904	FALSE	13	18	3	21	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-RNR2	3	3	MT-ND4	2235	chrM:11994:+	MT-RNR2	6121	chrM:2413:+	INCL_NON_REF_SPLICE	NO	5001	12768	0	0	0.0452	0.0452	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LS123_LARGE_INTESTINE	0	0	0.0904	FALSE	13	18	3	21	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND6--MT-TE	3	1	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0452	0.0151	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LS123_LARGE_INTESTINE	0.8	1	0.0603	FALSE	499	1288	110	792	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	CMTM8--CMTM7	3	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0452	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	LS123_LARGE_INTESTINE	1	1	0.0452	FALSE	118	557	29	88	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1017	chrM:10776:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	1	1	0.0452	FALSE	230	190	14	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	1	1	0.0452	FALSE	231	204	14	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1116	chrM:10875:+	MT-ATP8	5453	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	1	1	0.0452	FALSE	230	193	14	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS123_LARGE_INTESTINE	1	1	0.0452	FALSE	231	205	14	283	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LS123_LARGE_INTESTINE	1	1	0.0452	TRUE	0	0	0	434	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	78	0.43	0.04	0.0302	0.0151	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LS123_LARGE_INTESTINE	0.04	0.43	0.0453	FALSE	16	356	14	466	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	C17orf76-AS1--RPS6KC1	2	0	C17orf76-AS1	1593	chr17:16342728:+	RPS6KC1	27782	chr1:213415912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	C17orf76-AS1->chr17:16342136-16381992:+,RPS6KC1->chr1:213224589-213448116:+,ribosomal_protein_S6_kinase_C1	LS123_LARGE_INTESTINE	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	HDHD1--RP11-1M18.1	2	0	HDHD1	6377	chrX:6995261:-	RP11-1M18.1	13169	chrX:6639585:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	HDHD1->chrX:6966961-7066231:-,RP11-1M18.1->chrX:6585906-6639585:-	LS123_LARGE_INTESTINE	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	LDLRAD3--TRIM44	2	0	LDLRAD3	1164	chr11:35965694:+	TRIM44	19552	chr11:35706807:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	YOSHIHARA_TCGA_num_samples[LUAD:1|SKCM:1],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,TRIM44->chr11:35684353-35829775:+,tripartite_motif_containing_44	LS123_LARGE_INTESTINE	1	1	0.0302	TRUE	0	0	0	2	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	PRSS23--PICALM	2	0	PRSS23	8412	chr11:86534635:+	PICALM	25674	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},PRSS23->chr11:86502101-86663952:+,protease,_serine_23,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	LS123_LARGE_INTESTINE	1	1	0.0302	TRUE	0	3	0	5	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0.0603	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LS123_LARGE_INTESTINE	1	1	0.0754	FALSE	407	2205	196	549	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0.0603	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LS123_LARGE_INTESTINE	1	1	0.0754	FALSE	515	4851	409	746	0	FALSE	ACH-000501
LS123_LARGE_INTESTINE	RWDD3--FUNDC2	2	0	RWDD3	1161	chr1:95699871:+	FUNDC2	13240	chrX:154261678:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	RWDD3->RWD_domain_containing_3,chr1:95699711-95712781:+,FUNDC2->FUN14_domain_containing_2,chrX:154254255-154288578:+	LS123_LARGE_INTESTINE	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	CEP85L--STXBP5-AS1	1	3	CEP85L	20571	chr6:118791700:-	STXBP5-AS1	39656	chr6:147293206:-	ONLY_REF_SPLICE	NO	1	0	0.8	1	0.0151	0.0452	CEP85L->centrosomal_protein_85_like,chr6:118781935-119031238:-,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	LS123_LARGE_INTESTINE	0.8	1	0.0603	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	PPP1R14C--PLEKHG1	1	2	PPP1R14C	3540	chr6:150537992:+	PLEKHG1	10308	chr6:150959216:+	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0151	0.0302	PPP1R14C->chr6:150464212-150571493:+,protein_phosphatase_1_regulatory_inhibitor_subunit_14C,PLEKHG1->chr6:150920999-151164799:+,pleckstrin_homology_and_RhoGEF_domain_containing_G1	LS123_LARGE_INTESTINE	0.25	1	0.0453	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	CEP85L--STXBP5-AS1	1	1	CEP85L	19463	chr6:118801034:-	STXBP5-AS1	49132	chr6:147181879:-	ONLY_REF_SPLICE	YES	6	2	0.25	0.5	0.0151	0.0151	CEP85L->centrosomal_protein_85_like,chr6:118781935-119031238:-,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	LS123_LARGE_INTESTINE	0.25	0.5	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	CEP85L--STXBP5-AS1	1	1	CEP85L	20571	chr6:118791700:-	STXBP5-AS1	46774	chr6:147185738:-	ONLY_REF_SPLICE	YES	1	1	0.67	0.67	0.0151	0.0151	CEP85L->centrosomal_protein_85_like,chr6:118781935-119031238:-,STXBP5-AS1->STXBP5_antisense_RNA_1,chr6:147163037-147525750:-	LS123_LARGE_INTESTINE	0.67	0.67	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	MYB--POGZ	1	1	MYB	16133	chr6:135524462:+	POGZ	26031	chr1:151414681:-	ONLY_REF_SPLICE	YES	7	7	0.22	0.22	0.0151	0.0151	MYB->ArcherDX_panel,FoundationOne_panel,MYB_proto-oncogene,_transcription_factor,Oncogene{Bushman},chr6:135502453-135540311:+,POGZ->chr1:151375200-151431941:-,pogo_transposable_element_with_ZNF_domain	LS123_LARGE_INTESTINE	0.22	0.22	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000501
LS123_LARGE_INTESTINE	RP11-466I1.1--CTD-3012A18.1	1	1	RP11-466I1.1	2424	chr11:29233312:+	CTD-3012A18.1	8905	chr11:29573907:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0.0151	RP11-466I1.1->chr11:29181503-29288281:+,CTD-3012A18.1->chr11:29540623-29574186:+	LS123_LARGE_INTESTINE	1	1	0.0302	TRUE	0	2	0	4	2	TRUE	ACH-000501
LS123_LARGE_INTESTINE	SF1--GNAS	1	1	SF1	3289	chr11:64543970:-	GNAS	32063	chr20:57470667:+	ONLY_REF_SPLICE	YES	158	500	0.01	0	0.0151	0.0151	GTEx_FI:{Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=3,Pituitary=3,Minor_Salivary_Gland=1,Brain_-_Hypothalamus=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	LS123_LARGE_INTESTINE	0	0.01	0.0302	FALSE	4	13	1	15	0	FALSE	ACH-000501
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	102	53	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.3511	0.702	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	2.0531	TRUE	508	994	45	981	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	105	22	PTMA	6593	chr2:232577226:+	NCL	15607	chr2:232326275:-	INCL_NON_REF_SPLICE	YES	8067	4250	0.02	0.03	1.3908	0.2914	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	1.6822	TRUE	0	0	0	5	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPK--MT-ND4	74	3	HNRNPK	7005	chr9:86588865:-	MT-ND4	16282	chrM:11169:+	INCL_NON_REF_SPLICE	YES	2810	15493	0.03	0	0.9802	0.0397	HNRNPK->Oncogene{Bushman},chr9:86582998-86595569:-,heterogeneous_nuclear_ribonucleoprotein_K,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	1.0199	FALSE	0	0	0	2	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	67	8	PTMA	6593	chr2:232577226:+	NCL	16478	chr2:232325404:-	INCL_NON_REF_SPLICE	YES	8067	3180	0.01	0.02	0.8875	0.106	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.9935	TRUE	0	0	0	5	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	61	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	562	6	0.11	0.92	0.808	0.0927	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.92	0.9007	TRUE	519	3926	326	965	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	51	44	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	53	117	0.64	0.45	0.6755	0.5828	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.64	1.2583	TRUE	181	1564	124	196	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RRP1B--TRAPPC10	41	53	RRP1B	10538	chr21:45105670:+	TRAPPC10	37490	chr21:45502669:+	ONLY_REF_SPLICE	YES	187	54	0.33	0.64	0.5431	0.702	{Klijn_CCL:Lymphoid=1},RRP1B->chr21:45079429-45115958:+,ribosomal_RNA_processing_1B,TRAPPC10->chr21:45432200-45526433:+,trafficking_protein_particle_complex_10	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.64	1.2451	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	52	5	PTMA	6054	chr2:232576687:+	NCL	16410	chr2:232325472:-	INCL_NON_REF_SPLICE	YES	8295	3545	0.01	0.02	0.6888	0.0662	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.755	TRUE	0	0	0	5	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM5--QRICH1	48	18	RBM5	5377	chr3:50131308:+	QRICH1	32581	chr3:49114471:-	ONLY_REF_SPLICE	YES	79	61	0.46	0.52	0.6358	0.2384	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+,QRICH1->chr3:49067140-49131796:-,glutamine_rich_1	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.52	0.8742	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	47	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6225	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6225	TRUE	0	0	0	518	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RP11-132N15.1	40	26	PVT1	1202	chr8:128806980:+	RP11-132N15.1	28454	chr3:187721776:-	INCL_NON_REF_SPLICE	YES	147	0	0.31	1	0.5298	0.3444	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-132N15.1->chr3:187715210-187721778:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	1	0.8742	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	27	5	PTMA	6054	chr2:232576687:+	NCL	16401	chr2:232325481:-	INCL_NON_REF_SPLICE	YES	8295	3477	0	0.01	0.3576	0.0662	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.4238	TRUE	0	0	0	5	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	27	2	PTMA	6024	chr2:232576657:+	NCL	15521	chr2:232326361:-	INCL_NON_REF_SPLICE	YES	7912	3562	0	0.01	0.3576	0.0265	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.3841	TRUE	0	0	0	5	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLYBL--NISCH	27	1	CLYBL	1093	chr13:100259011:+	NISCH	22444	chr3:52491859:+	ONLY_REF_SPLICE	YES	0	34	1	0.45	0.3576	0.0132	CLYBL->chr13:100258919-100549387:+,citrate_lyase_beta_like,NISCH->chr3:52489134-52527087:+,nischarin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	1	0.3708	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NF1--RP11-848P1.9	19	27	NF1	1443	chr17:29422387:+	RP11-848P1.9	79958	chr17:29343913:+	ONLY_REF_SPLICE	YES	7	0	0.87	1	0.2517	0.3576	LOCAL_REARRANGEMENT:+:[1800],NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,RP11-848P1.9->chr17:29335515-29420145:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	0.6093	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	24	2	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1759	1	0.01	0.3179	0.0265	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.3444	FALSE	101	855	57	72	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RRP1B--TRAPPC10	12	45	RRP1B	9518	chr21:45104531:+	TRAPPC10	37490	chr21:45502669:+	ONLY_REF_SPLICE	YES	259	54	0.18	0.51	0.1589	0.5961	{Klijn_CCL:Lymphoid=1},RRP1B->chr21:45079429-45115958:+,ribosomal_RNA_processing_1B,TRAPPC10->chr21:45432200-45526433:+,trafficking_protein_particle_complex_10	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.51	0.755	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	17	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2252	0.0927	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3179	FALSE	462	80	0	856	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	14	17	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	154	89	0.17	0.26	0.1854	0.2252	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.26	0.4106	TRUE	267	562	48	632	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	18	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2384	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2384	TRUE	0	0	0	434	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	17	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2252	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2252	TRUE	0	0	0	434	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	10	24	PTMA	6593	chr2:232577226:+	NCL	15493	chr2:232326389:-	INCL_NON_REF_SPLICE	YES	8067	3660	0	0.01	0.1325	0.3179	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.4504	TRUE	0	0	0	5	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NF1--RP11-848P1.9	9	22	NF1	1443	chr17:29422387:+	RP11-848P1.9	81067	chr17:29348928:+	ONLY_REF_SPLICE	YES	7	1	0.82	0.97	0.1192	0.2914	LOCAL_REARRANGEMENT:+:[1800],NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,RP11-848P1.9->chr17:29335515-29420145:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.97	0.4106	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	9	22	PTMA	6593	chr2:232577226:+	NCL	15589	chr2:232326293:-	INCL_NON_REF_SPLICE	YES	8067	3586	0	0.01	0.1192	0.2914	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.4106	TRUE	0	0	0	5	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	14	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1854	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1854	FALSE	183	104	9	328	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP53--PCED1B-AS1	14	0	RPL23AP53	2207	chr8:180804:-	PCED1B-AS1	9973	chr12:47604520:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1854	0	RPL23AP53->chr8:163186-182231:-,ribosomal_protein_L23a_pseudogene_53,PCED1B-AS1->PCED1B_antisense_RNA_1,chr12:47599681-47610239:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1854	TRUE	0	0	0	3	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	10	9	PTMA	6060	chr2:232576693:+	NCL	15521	chr2:232326361:-	INCL_NON_REF_SPLICE	YES	8754	3562	0	0.01	0.1325	0.1192	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.2517	TRUE	0	0	0	5	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RP11-132N15.1	5	29	PVT1	6936	chr8:128867565:+	RP11-132N15.1	28454	chr3:187721776:-	INCL_NON_REF_SPLICE	YES	134	0	0.2	1	0.0662	0.3841	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-132N15.1->chr3:187715210-187721778:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.4503	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RP11-132N15.1	4	29	PVT1	2520	chr8:128808317:+	RP11-132N15.1	28454	chr3:187721776:-	INCL_NON_REF_SPLICE	YES	161	0	0.17	1	0.053	0.3841	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-132N15.1->chr3:187715210-187721778:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.4371	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	27	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	4	34	0.89	0.48	0.053	0.3576	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.89	0.4106	FALSE	189	492	56	216	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	6	13	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	151	89	0.11	0.18	0.0795	0.1722	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.18	0.2517	TRUE	267	562	48	632	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RP11-132N15.1	4	21	PVT1	1202	chr8:128806980:+	RP11-132N15.1	29542	chr3:187715546:-	ONLY_REF_SPLICE	YES	147	1	0.15	0.96	0.053	0.2782	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-132N15.1->chr3:187715210-187721778:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.96	0.3312	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RP11-132N15.2	1	33	PVT1	1202	chr8:128806980:+	RP11-132N15.2	29279	chr3:187720367:-	ONLY_REF_SPLICE	NO	147	0	0.19	1	0.0132	0.4371	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-132N15.2->chr3:187719488-187721194:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.4503	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	3	21	PTMA	6597	chr2:232577230:+	NCL	16314	chr2:232325568:-	INCL_NON_REF_SPLICE	NO	8773	4371	0	0.01	0.0397	0.2782	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.3179	FALSE	0	0	0	5	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	7	2	PTMA	6002	chr2:232576635:+	NCL	15445	chr2:232326437:-	INCL_NON_REF_SPLICE	YES	8268	3744	0	0	0.0927	0.0265	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1192	TRUE	0	0	0	5	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RP11-132N15.3	7	2	PVT1	1202	chr8:128806980:+	RP11-132N15.3	31976	chr3:187676751:-	ONLY_REF_SPLICE	YES	147	16	0.06	0.36	0.0927	0.0265	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-132N15.3->chr3:187676563-187694195:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.36	0.1192	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	5	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0795	0.0662	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.1457	FALSE	189	492	56	216	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	7	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0927	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0927	TRUE	0	0	0	81	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	16	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.9	0.0397	0.2119	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.2516	FALSE	189	492	56	216	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0927	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0927	FALSE	230	198	14	283	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0927	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0927	FALSE	231	205	14	283	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ND4L	5	6	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1470	0	0.01	1	0.0662	0.0795	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1457	FALSE	1	1	0	107	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	3	14	PTMA	6597	chr2:232577230:+	NCL	16401	chr2:232325481:-	INCL_NON_REF_SPLICE	YES	8773	3477	0	0	0.0397	0.1854	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.2251	TRUE	0	0	0	5	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	6	0	PTMA	6024	chr2:232576657:+	NCL	16455	chr2:232325427:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0795	0	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0795	TRUE	0	0	0	5	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	3	12	PTMA	6913	chr2:232577546:+	NCL	16421	chr2:232325461:-	INCL_NON_REF_SPLICE	YES	7972	3437	0	0	0.0397	0.1589	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1986	TRUE	0	0	0	5	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	15392	0	0	1	0.0662	0.0265	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0927	FALSE	231	217	16	283	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	5	MT-ND4	1818	chrM:11577:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	13405	0	0	1	0.053	0.0662	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1192	FALSE	231	217	16	283	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	5	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0662	TRUE	0	0	0	100	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	2	12	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	59	117	0.19	0.11	0.0265	0.1589	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.19	0.1854	TRUE	105	90	7	93	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	4	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.053	0.053	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.106	FALSE	189	492	56	216	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	3	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	9674	0	0	1	0.053	0.0397	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0927	FALSE	182	97	9	327	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	3	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	16017	0	0	1	0.053	0.0397	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0927	FALSE	231	217	16	283	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0.0927	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1324	FALSE	462	80	0	856	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	3	7	PTMA	6054	chr2:232576687:+	NCL	16320	chr2:232325562:-	INCL_NON_REF_SPLICE	YES	8295	4371	0	0	0.0397	0.0927	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1324	TRUE	0	0	0	5	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	2	MT-ND4	1538	chrM:11297:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	17160	87	0	0.06	0.053	0.0265	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.0795	FALSE	231	217	16	283	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14209	5	0	0.55	0.053	0.0265	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.55	0.0795	FALSE	231	217	16	283	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	5	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.67	0.0397	0.0662	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.1059	FALSE	189	492	56	216	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM117--RP11-271K11.5	4	1	TMEM117	2535	chr12:44238731:+	RP11-271K11.5	26295	chr17:29365672:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.053	0.0132	TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117,RP11-271K11.5->chr17:29365593-29386139:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLYBL--NISCH	4	0	CLYBL	1093	chr13:100259011:+	NISCH	24749	chr3:52504875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.053	0	CLYBL->chr13:100258919-100549387:+,citrate_lyase_beta_like,NISCH->chr3:52489134-52527087:+,nischarin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.053	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.053	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.053	FALSE	13	9	0	364	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.053	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.053	FALSE	13	9	0	364	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.053	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.053	FALSE	230	193	14	283	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.053	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.053	TRUE	0	0	0	434	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAPGEF5--STEAP1B	4	0	RAPGEF5	8732	chr7:22306583:-	STEAP1B	47505	chr7:22459455:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.053	0	LOCAL_REARRANGEMENT:-:[62300],RAPGEF5->Rap_guanine_nucleotide_exchange_factor_5,chr7:22157856-22396763:-,STEAP1B->STEAP_family_member_1B,chr7:22459063-22672544:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.053	TRUE	0	1	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XRCC5--RPL37A	4	0	XRCC5	2602	chr2:216974180:+	RPL37A	31413	chr2:217363993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.053	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.053	TRUE	1	1	0	8	1	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	3	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	15324	0	0	1	0.0397	0.0397	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0794	FALSE	231	217	16	283	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	3	3	PTMA	6060	chr2:232576693:+	NCL	16446	chr2:232325436:-	ONLY_REF_SPLICE	YES	8754	3313	0	0	0.0397	0.0397	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0794	FALSE	0	0	0	5	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM5--QRICH1	1	11	RBM5	5285	chr3:50131216:+	QRICH1	32581	chr3:49114471:-	ONLY_REF_SPLICE	NO	92	61	0.12	0.16	0.0132	0.1457	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+,QRICH1->chr3:49067140-49131796:-,glutamine_rich_1	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.16	0.1589	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RERE--MT-ND4	3	3	RERE	34149	chr1:8416234:-	MT-ND4	41236	chrM:11069:+	INCL_NON_REF_SPLICE	NO	135	13515	0.04	0	0.0397	0.0397	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0794	FALSE	1	0	0	5	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	10269	21695	0	0	0.0397	0.0265	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0662	FALSE	183	104	9	328	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10984	23558	0	0	0.0397	0.0265	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0662	FALSE	183	104	9	328	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	3	2	MT-ND5	2761	chrM:14097:+	MT-ND6	6169	chrM:14317:-	INCL_NON_REF_SPLICE	YES	1	2643	0.83	0	0.0397	0.0265	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.83	0.0662	FALSE	26	124	4	93	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	3	2	PTMA	6056	chr2:232576689:+	NCL	16481	chr2:232325401:-	INCL_NON_REF_SPLICE	NO	8448	3252	0	0	0.0397	0.0265	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0662	FALSE	0	0	0	5	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RERE--MT-ND4	3	2	RERE	34132	chr1:8416251:-	MT-ND4	41393	chrM:11226:+	INCL_NON_REF_SPLICE	YES	135	15303	0.04	0	0.0397	0.0265	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0662	FALSE	1	0	0	5	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRI3BP--UBC	3	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0397	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	TRUE	5	99	5	34	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD37--CHPF2	3	0	CD37	6370	chr19:49843797:+	CHPF2	12259	chr7:150931090:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	CD37->CD37_molecule,chr19:49838428-49846592:+,CHPF2->chondroitin_polymerizing_factor_2,chr7:150929575-150935908:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FADS2--TMEM258	3	0	FADS2	1049	chr11:61560500:+	TMEM258	29821	chr11:61558074:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0397	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[178],FADS2->chr11:61560452-61634826:+,fatty_acid_desaturase_2,TMEM258->chr11:61535973-61560274:-,transmembrane_protein_258	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	TRUE	0	2	0	5	2	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAEA--CTBP1	3	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0397	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	TRUE	3	14	2	43	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	FALSE	183	104	9	328	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	FALSE	231	204	14	283	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	FALSE	231	205	14	283	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	3	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	FALSE	101	855	57	72	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SFMBT1--RBM5	2	3	SFMBT1	1935	chr3:53079832:-	RBM5	42976	chr3:50142982:+	ONLY_REF_SPLICE	YES	5	92	0.5	0.05	0.0265	0.0397	SFMBT1->Scm-like_with_four_mbt_domains_1,chr3:52937588-53080766:-,RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.5	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM25--HPD	2	2	RBM25	1270	chr14:73525413:+	HPD	30823	chr12:122296619:-	ONLY_REF_SPLICE	NO	282	0	0.01	1	0.0265	0.0265	RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+,HPD->4-hydroxyphenylpyruvate_dioxygenase,chr12:122277433-122301502:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.053	FALSE	0	0	0	1	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLPP--CDK5RAP1	2	1	CLPP	4936	chr19:6366374:+	CDK5RAP1	10442	chr20:31984890:-	ONLY_REF_SPLICE	YES	338	8	0.01	0.27	0.0265	0.0132	CLPP->caseinolytic_mitochondrial_matrix_peptidase_proteolytic_subunit,chr19:6361463-6368919:+,CDK5RAP1->CDK5_regulatory_subunit_associated_protein_1,chr20:31946645-31989367:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.27	0.0397	FALSE	0	0	0	1	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SFMBT1--RBM5	1	5	SFMBT1	5961	chr3:53052102:-	RBM5	42976	chr3:50142982:+	ONLY_REF_SPLICE	YES	6	92	0.5	0.06	0.0132	0.0662	SFMBT1->Scm-like_with_four_mbt_domains_1,chr3:52937588-53080766:-,RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.5	0.0794	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STIM2--LAP3	2	1	STIM2	11685	chr4:27004726:+	LAP3	26388	chr4:17581447:+	ONLY_REF_SPLICE	YES	41	72	0.07	0.04	0.0265	0.0132	STIM2->chr4:26859300-27027003:+,stromal_interaction_molecule_2,LAP3->chr4:17578815-17609595:+,leucine_aminopeptidase_3	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.07	0.0397	TRUE	0	0	0	1	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0.0132	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	TRUE	62	24	1	171	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL6--B2M	2	0	BCL6	1318	chr3:187463198:-	B2M	21387	chr15:45007621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	GTEx&tcga_normals:3/3694=0.08%,GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Whole_Blood=1},BCL6->B-cell_CLL/lymphoma_6,Oncogene{Bushman},chr3:187439165-187463515:-,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	1	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL6--CCDC125	2	0	BCL6	1318	chr3:187463198:-	CCDC125	33759	chr5:68581294:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	BCL6->B-cell_CLL/lymphoma_6,Oncogene{Bushman},chr3:187439165-187463515:-,CCDC125->chr5:68576002-68628636:-,coiled-coil_domain_containing_125	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAPRIN1--HNRNPDL	2	0	CAPRIN1	18078	chr11:34118220:+	HNRNPDL	30820	chr4:83346036:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	CAPRIN1->cell_cycle_associated_protein_1,chr11:34073230-34122703:+,HNRNPDL->chr4:83343717-83351294:-,heterogeneous_nuclear_ribonucleoprotein_D_like	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTDSPL2--B2M	2	0	CTDSPL2	1539	chr15:44719970:+	B2M	29463	chr15:45007621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	4	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUX1--RUVBL1	2	0	CUX1	1415	chr7:101459373:+	RUVBL1	75153	chr3:127787756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX21--LIMK2	2	0	DDX21	4884	chr10:70723225:+	LIMK2	33014	chr22:31664130:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	DDX21->DEAD-box_helicase_21,chr10:70715884-70744829:+,LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEF2B--KIAA0101	2	0	MEF2B	1511	chr19:19302890:-	KIAA0101	20709	chr15:64669104:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	MEF2B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:19256377-19303400:-,myocyte_enhancer_factor_2B,KIAA0101->KIAA0101,chr15:64657193-64679886:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PQLC1--NFATC1	2	0	PQLC1	7125	chr18:77703329:-	NFATC1	31197	chr18:77221311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=3;pct=0.03%;dist=Adipose_-_Visceral_(Omentum)=1,Muscle_-_Skeletal=1,Whole_Blood=1},PQLC1->PQ_loop_repeat_containing_1,chr18:77662420-77711664:-,NFATC1->Oncogene{Bushman},chr18:77155856-77289325:+,nuclear_factor_of_activated_T-cells_1	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTK2B--PPP2R2A	2	0	PTK2B	6168	chr8:27183198:+	PPP2R2A	43711	chr8:26196406:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	PTK2B->chr8:27168999-27316903:+,protein_tyrosine_kinase_2_beta,PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	R3HDM1--ZRANB3	2	0	R3HDM1	26958	chr2:136437894:+	ZRANB3	39021	chr2:136262066:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	LOCAL_INVERSION:+:-:[219],R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+,ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	R3HDM1--ZRANB3	2	0	R3HDM1	28757	chr2:136467801:+	ZRANB3	39021	chr2:136262066:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	LOCAL_INVERSION:+:-:[219],R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+,ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP53--PCED1B-AS1	2	0	RPL23AP53	2207	chr8:180804:-	PCED1B-AS1	13734	chr12:47599928:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	RPL23AP53->chr8:163186-182231:-,ribosomal_protein_L23a_pseudogene_53,PCED1B-AS1->PCED1B_antisense_RNA_1,chr12:47599681-47610239:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	2	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A1--AATF	2	0	SLC38A1	2492	chr12:46662309:-	AATF	34301	chr17:35343916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1,AATF->Oncogene{Bushman},apoptosis_antagonizing_transcription_factor,chr17:35306175-35414171:+	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG8--ITGB3BP	2	0	SNHG8	1429	chr4:119200292:+	ITGB3BP	16441	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YAF2--PPHLN1	2	0	YAF2	1751	chr12:42631401:-	PPHLN1	43594	chr12:42835117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=2,Pancreas=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[98],YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,PPHLN1->chr12:42632249-42853517:+,periphilin_1	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0265	TRUE	0	2	0	4	1	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LAMC1--RGL1	1	2	LAMC1	1675	chr1:182993269:+	RGL1	35198	chr1:183666538:+	ONLY_REF_SPLICE	NO	2	1	0.6	0.75	0.0132	0.0265	LAMC1->chr1:182992595-183114727:+,laminin_subunit_gamma_1,RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.75	0.0397	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPM--GPR108	1	1	HNRNPM	6438	chr19:8530246:+	GPR108	26138	chr19:6733924:-	ONLY_REF_SPLICE	YES	1331	59	0	0.03	0.0132	0.0132	HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,GPR108->G_protein-coupled_receptor_108,chr19:6729925-6737614:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPA8--EPB41	1	1	HSPA8	5979	chr11:122928960:-	EPB41	35862	chr1:29442211:+	ONLY_REF_SPLICE	YES	6698	324	0	0.01	0.0132	0.0132	HSPA8->chr11:122928197-122933938:-,heat_shock_protein_family_A_(Hsp70)_member_8,EPB41->chr1:29213603-29446553:+,erythrocyte_membrane_protein_band_4.1	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNAB2--ACOT7	1	1	KCNAB2	11901	chr1:6100705:+	ACOT7	54236	chr1:6324755:-	ONLY_REF_SPLICE	YES	1009	440	0	0	0.0132	0.0132	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0264	FALSE	0	2	0	3	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNAB2--LRRC47	1	1	KCNAB2	11901	chr1:6100705:+	LRRC47	37414	chr1:3703874:-	ONLY_REF_SPLICE	YES	1009	125	0	0.02	0.0132	0.0132	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,LRRC47->chr1:3696784-3713068:-,leucine_rich_repeat_containing_47	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LAMC1--RGL1	1	1	LAMC1	1675	chr1:182993269:+	RGL1	36308	chr1:183711261:+	ONLY_REF_SPLICE	YES	2	1	0.5	0.67	0.0132	0.0132	LAMC1->chr1:182992595-183114727:+,laminin_subunit_gamma_1,RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.67	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MATR3--USP48	1	1	MATR3	9772	chr5:138629494:+	USP48	52862	chr1:22047659:-	ONLY_REF_SPLICE	YES	134	198	0.01	0.01	0.0132	0.0132	MATR3->chr5:138609441-138667360:+,matrin_3,USP48->chr1:22004791-22110099:-,ubiquitin_specific_peptidase_48	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB7A--RPN1	1	1	RAB7A	1238	chr3:128445202:+	RPN1	20119	chr3:128351000:-	ONLY_REF_SPLICE	YES	2148	552	0	0	0.0132	0.0132	GTEx_v2:{count=2;pct=0.02%;dist=Adrenal_Gland=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[45047],RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,RPN1->Oncogene{Bushman},chr3:128338817-128399918:-,ribophorin_I	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0264	FALSE	0	1	0	1	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBBP4--ZBTB8OS	1	1	RBBP4	3511	chr1:33123173:+	ZBTB8OS	21255	chr1:33100393:-	ONLY_REF_SPLICE	NO	1318	169	0	0.01	0.0132	0.0132	LOCAL_INVERSION:+:-:[239],RBBP4->chr1:33116743-33151812:+,retinoblastoma_binding_protein_4,ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ILF3	1	1	RCC1	2920	chr1:28835417:+	ILF3	28913	chr19:10792669:+	ONLY_REF_SPLICE	YES	77	978	0.03	0	0.0132	0.0132	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000371
RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SREBF1--FLII	1	1	SREBF1	9416	chr17:17718149:-	FLII	18580	chr17:18160333:-	ONLY_REF_SPLICE	NO	120	49	0.02	0.04	0.0132	0.0132	SREBF1->chr17:17713713-17740325:-,sterol_regulatory_element_binding_transcription_factor_1,FLII->Oncogene{Bushman},chr17:18148150-18162230:-,flightless_I_actin_binding_protein	RL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0264	TRUE	0	0	0	1	0	FALSE	ACH-000371
KYM1_SOFT_TISSUE	RP11-444D3.1--SOX5	101	30	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	6	1	0.96	1.1853	0.3521	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KYM1_SOFT_TISSUE	0.96	1	1.5374	TRUE	477	1352	189	275	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	TIMM23B--LINC00843	100	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1735	0.1526	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KYM1_SOFT_TISSUE	0.99	1	1.3261	TRUE	508	994	45	981	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	WWOX--VAT1L	78	23	WWOX	21090	chr16:78420845:+	VAT1L	34273	chr16:77850818:+	ONLY_REF_SPLICE	YES	44	0	0.7	1	0.9154	0.2699	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	KYM1_SOFT_TISSUE	0.7	1	1.1853	TRUE	0	0	0	1	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	CAPRIN1--CAT	55	21	CAPRIN1	11211	chr11:34104588:+	CAT	26717	chr11:34470739:+	ONLY_REF_SPLICE	YES	212	142	0.26	0.35	0.6454	0.2464	CAPRIN1->cell_cycle_associated_protein_1,chr11:34073230-34122703:+,CAT->catalase,chr11:34460472-34493609:+	KYM1_SOFT_TISSUE	0.26	0.35	0.8918	TRUE	0	0	0	1	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	RP11-123O10.4--GRIP1	53	11	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.622	0.1291	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYM1_SOFT_TISSUE	1	1	0.7511	FALSE	416	2512	207	587	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	POC5--COL4A3BP	50	20	POC5	13909	chr5:74981032:-	COL4A3BP	24074	chr5:74722303:-	ONLY_REF_SPLICE	YES	21	122	0.77	0.36	0.5868	0.2347	POC5->POC5_centriolar_protein,chr5:74969949-75013313:-,COL4A3BP->chr5:74664311-74807963:-,collagen_type_IV_alpha_3_binding_protein	KYM1_SOFT_TISSUE	0.36	0.77	0.8215	TRUE	0	0	0	1	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	TIMM23--RP11-464F9.1	54	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	209	2	0.21	0.97	0.6337	0.0235	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KYM1_SOFT_TISSUE	0.21	0.97	0.6572	TRUE	519	3926	326	965	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	KCTD21--GAB2	41	0	KCTD21	1250	chr11:77899619:-	GAB2	23984	chr11:77934722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4811	0	LOCAL_REARRANGEMENT:-:[26475],KCTD21->chr11:77882295-77899868:-,potassium_channel_tetramerization_domain_containing_21,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	KYM1_SOFT_TISSUE	1	1	0.4811	TRUE	0	0	0	1	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	MT-TA--MT-TC	38	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4459	0.0235	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYM1_SOFT_TISSUE	1	1	0.4694	FALSE	462	80	0	856	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	33	15	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.94	1	0.3873	0.176	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYM1_SOFT_TISSUE	0.94	1	0.5633	FALSE	407	2205	196	549	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RP11-680G10.1--GSE1	32	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	19	1	0.68	0.3755	0.0939	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYM1_SOFT_TISSUE	0.68	1	0.4694	TRUE	458	1351	185	561	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RP11-680G10.1--GSE1	22	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	76	1	0.27	0.2582	0.0704	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYM1_SOFT_TISSUE	0.27	1	0.3286	TRUE	465	1949	224	605	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RP11-141M1.3--STARD13	21	5	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	6	44	0.81	0.37	0.2464	0.0587	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	KYM1_SOFT_TISSUE	0.37	0.81	0.3051	FALSE	49	120	16	70	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RP11-444D3.1--SOX5	14	18	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	1	6	0.97	0.84	0.1643	0.2112	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KYM1_SOFT_TISSUE	0.84	0.97	0.3755	TRUE	274	363	69	150	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	15	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	9	0.88	0.72	0.176	0.0939	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYM1_SOFT_TISSUE	0.72	0.88	0.2699	FALSE	515	4851	409	746	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	MIPOL1--RP11-356O9.1	13	0	MIPOL1	1192	chr14:37667309:+	RP11-356O9.1	44559	chr14:38033424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1526	0	NEIGHBORS[11686],MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1,RP11-356O9.1->chr14:38033252-38048330:+	KYM1_SOFT_TISSUE	1	1	0.1526	FALSE	0	0	0	1	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	MT-TA--MT-TC	12	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1408	0.0469	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYM1_SOFT_TISSUE	1	1	0.1877	FALSE	462	80	0	856	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	9	16	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.1056	0.1878	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYM1_SOFT_TISSUE	0.96	1	0.2934	FALSE	192	492	57	212	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	VCL--ADK	12	4	VCL	2333	chr10:75802911:+	ADK	44860	chr10:76468079:+	ONLY_REF_SPLICE	YES	740	84	0.02	0.16	0.1408	0.0469	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[31042],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ADK->adenosine_kinase,chr10:75910960-76469061:+	KYM1_SOFT_TISSUE	0.02	0.16	0.1877	FALSE	0	1	0	2	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	MT-CO3--MT-ATP6	7	22	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	2	0.94	0.94	0.0821	0.2582	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYM1_SOFT_TISSUE	0.94	0.94	0.3403	FALSE	189	492	56	216	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RP11-444D3.1--SOX5	3	30	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	6	1	0.85	0.0352	0.3521	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KYM1_SOFT_TISSUE	0.85	1	0.3873	TRUE	160	277	29	98	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	MT-CO3--MT-ATP6	4	22	MT-CO3	1113	chrM:9319:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	1	1	0.96	0.96	0.0469	0.2582	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYM1_SOFT_TISSUE	0.96	0.96	0.3051	FALSE	189	492	56	216	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1056	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KYM1_SOFT_TISSUE	1	1	0.1056	FALSE	13	9	0	364	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	7	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	9	0.94	0.62	0.0821	0.0939	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYM1_SOFT_TISSUE	0.62	0.94	0.176	FALSE	467	2173	244	435	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	MT-CO3--MT-ATP6	3	22	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	2	0.89	0.93	0.0352	0.2582	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYM1_SOFT_TISSUE	0.89	0.93	0.2934	FALSE	189	492	56	216	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RPSAP52--HMGA2	8	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	2	830	0.83	0.01	0.0939	0.0235	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	KYM1_SOFT_TISSUE	0.01	0.83	0.1174	FALSE	0	59	0	125	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	C15orf57--CBX3	7	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	28	18	0.26	0.36	0.0821	0.0352	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KYM1_SOFT_TISSUE	0.26	0.36	0.1173	TRUE	267	562	48	632	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RP11-275N1.1--NEBL	6	5	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	4	4	0.73	0.73	0.0704	0.0587	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	KYM1_SOFT_TISSUE	0.73	0.73	0.1291	TRUE	0	2	0	25	2	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RP11-444D3.1--SOX5	2	18	RP11-444D3.1	8531	chr12:24430150:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	1	6	0.95	0.77	0.0235	0.2112	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KYM1_SOFT_TISSUE	0.77	0.95	0.2347	TRUE	13	17	1	13	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	C10orf112--PLXDC2	6	0	C10orf112	32754	chr10:20079115:+	PLXDC2	37923	chr10:20290704:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0704	0	NEIGHBORS[25838],C10orf112->chr10:19492779-20079330:+,PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2	KYM1_SOFT_TISSUE	1	1	0.0704	FALSE	73	74	3	10	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	CTC-786C10.1--GSE1	5	4	CTC-786C10.1	1532	chr16:85205413:+	GSE1	10562	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	103	1	0.08	0.0587	0.0469	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYM1_SOFT_TISSUE	0.08	1	0.1056	TRUE	0	0	0	2	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	KCTD21--GAB2	5	4	KCTD21	2435	chr11:77897727:-	GAB2	23984	chr11:77934722:-	ONLY_REF_SPLICE	YES	2	26	0.82	0.26	0.0587	0.0469	LOCAL_REARRANGEMENT:-:[26475],KCTD21->chr11:77882295-77899868:-,potassium_channel_tetramerization_domain_containing_21,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	KYM1_SOFT_TISSUE	0.26	0.82	0.1056	TRUE	0	0	0	1	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	XXbac-BPG252P9.9--TUBBP2	6	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0704	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	KYM1_SOFT_TISSUE	1	1	0.0704	TRUE	0	1	0	48	1	FALSE	ACH-000607
KYM1_SOFT_TISSUE	C15orf57--CBX3	5	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	27	18	0.23	0.31	0.0587	0.0352	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KYM1_SOFT_TISSUE	0.23	0.31	0.0939	TRUE	267	562	48	632	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	2	15	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	3	0	0.85	1	0.0235	0.176	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYM1_SOFT_TISSUE	0.85	1	0.1995	FALSE	275	511	55	178	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RB1--ITM2B	5	1	RB1	17872	chr13:48955579:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	133	1636	0.04	0	0.0587	0.0117	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	KYM1_SOFT_TISSUE	0	0.04	0.0704	FALSE	27	49	8	8	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	MT-CO3--MT-ATP6	5	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYM1_SOFT_TISSUE	1	1	0.0587	FALSE	189	492	56	216	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RP11-275N1.1--NEBL	5	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0587	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	KYM1_SOFT_TISSUE	1	1	0.0587	TRUE	0	0	0	21	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RP11-141M1.3--STARD13	4	3	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	44	0.88	0.14	0.0469	0.0352	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	KYM1_SOFT_TISSUE	0.14	0.88	0.0821	FALSE	141	264	50	91	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	MT-TA--MT-TC	3	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0.0704	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYM1_SOFT_TISSUE	1	1	0.1056	FALSE	462	80	0	856	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	MT-CO2--MT-CO1	3	5	MT-CO2	1286	chrM:7871:+	MT-CO1	5166	chrM:6385:+	INCL_NON_REF_SPLICE	YES	3	19049	0.73	0	0.0352	0.0587	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYM1_SOFT_TISSUE	0	0.73	0.0939	FALSE	36	10	0	27	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	MT-CO3--MT-ATP6	3	5	MT-CO3	1123	chrM:9329:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0352	0.0587	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYM1_SOFT_TISSUE	0.89	1	0.0939	FALSE	189	492	56	216	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	CTD-2251F13.1--PRKD1	4	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0469	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	KYM1_SOFT_TISSUE	1	1	0.0469	TRUE	0	3	0	9	3	TRUE	ACH-000607
KYM1_SOFT_TISSUE	JSRP1--RPS28	4	0	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KYM1_SOFT_TISSUE	1	1	0.0469	TRUE	0	1	0	84	1	FALSE	ACH-000607
KYM1_SOFT_TISSUE	MT-CO2--MT-CO1	3	4	MT-CO2	1256	chrM:7841:+	MT-CO1	5313	chrM:6532:+	INCL_NON_REF_SPLICE	YES	3	19642	0.7	0	0.0352	0.0469	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYM1_SOFT_TISSUE	0	0.7	0.0821	FALSE	36	10	0	27	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	NAALADL2--NLGN1	3	3	NAALADL2	2201	chr3:174158822:+	NLGN1	58131	chr3:173993105:+	ONLY_REF_SPLICE	YES	0	24	1	0.2	0.0352	0.0352	NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+,NLGN1->chr3:173114074-174004434:+,neuroligin_1	KYM1_SOFT_TISSUE	0.2	1	0.0704	TRUE	0	1	0	1	1	TRUE	ACH-000607
KYM1_SOFT_TISSUE	XXyac-YX155B6.6--HYDIN	3	2	XXyac-YX155B6.6	8884	chr1:147668236:-	HYDIN	22289	chr16:71196633:-	ONLY_REF_SPLICE	YES	26	6	0.16	0.45	0.0352	0.0235	GTEx_FI:{Brain=[count:3=pct:0.5]},XXyac-YX155B6.6->chr1:147635066-147700929:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	KYM1_SOFT_TISSUE	0.16	0.45	0.0587	TRUE	3	1	0	4	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	AC024084.1--AC009784.3	3	0	AC024084.1	2134	chr7:135715781:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	KYM1_SOFT_TISSUE	1	1	0.0352	FALSE	1	6	0	14	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	CTC-786C10.1--GSE1	2	4	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	76	1	0.07	0.0235	0.0469	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYM1_SOFT_TISSUE	0.07	1	0.0704	TRUE	2	3	0	21	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYM1_SOFT_TISSUE	1	1	0.0352	FALSE	189	492	56	216	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYM1_SOFT_TISSUE	1	1	0.0352	FALSE	462	80	0	856	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RP11-444D3.1--SOX5	1	6	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	15	6	0.32	0.54	0.0117	0.0704	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KYM1_SOFT_TISSUE	0.32	0.54	0.0821	TRUE	16	11	2	20	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	MICAL2--PARVA	2	1	MICAL2	15266	chr11:12226004:+	PARVA	55416	chr11:12495292:+	ONLY_REF_SPLICE	YES	284	63	0.01	0.05	0.0235	0.0117	{Klijn_CCL:Kidney=1},MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2,PARVA->chr11:12398732-12552348:+,parvin_alpha	KYM1_SOFT_TISSUE	0.01	0.05	0.0352	FALSE	0	0	0	1	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RB1--ITM2B	2	1	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	58	1636	0.05	0	0.0235	0.0117	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	KYM1_SOFT_TISSUE	0	0.05	0.0352	FALSE	53	73	8	19	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	ARHGEF3--FAM208A	2	0	ARHGEF3	14004	chr3:56916320:-	FAM208A	33649	chr3:56707753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	NEIGHBORS[44181],ARHGEF3->Rho_guanine_nucleotide_exchange_factor_3,chr3:56761446-57113357:-,FAM208A->chr3:56654161-56717265:-,family_with_sequence_similarity_208_member_A	KYM1_SOFT_TISSUE	1	1	0.0235	FALSE	0	0	0	1	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	KYM1_SOFT_TISSUE	1	1	0.0235	TRUE	0	3	0	8	3	TRUE	ACH-000607
KYM1_SOFT_TISSUE	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1069	chr14:30766181:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	KYM1_SOFT_TISSUE	1	1	0.0235	TRUE	0	3	0	9	3	TRUE	ACH-000607
KYM1_SOFT_TISSUE	POLE2--NEMF	2	0	POLE2	3464	chr14:50146443:-	NEMF	47212	chr14:50262662:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	LOCAL_REARRANGEMENT:-:[94857],POLE2->chr14:50110273-50155140:-,polymerase_(DNA)_epsilon_2,_accessory_subunit,NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor	KYM1_SOFT_TISSUE	1	1	0.0235	TRUE	0	0	0	3	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	RGS5--CABP1	2	0	RGS5	12338	chr1:163122340:-	CABP1	29075	chr12:121097681:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	RGS5->chr1:163080911-163291577:-,regulator_of_G-protein_signaling_5,CABP1->calcium_binding_protein_1,chr12:121078355-121105127:+	KYM1_SOFT_TISSUE	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	RP11-123O10.4--GRIP1	1	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0117	0.0469	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYM1_SOFT_TISSUE	0.83	1	0.0586	FALSE	93	270	15	244	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	RP11-440L14.1--CTBP1	2	0	RP11-440L14.1	1078	chr4:775560:-	CTBP1	11273	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	RP11-440L14.1->chr4:756175-775637:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	KYM1_SOFT_TISSUE	1	1	0.0235	TRUE	0	2	0	7	2	TRUE	ACH-000607
KYM1_SOFT_TISSUE	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	1258	chr12:24715267:-	SOX5	31730	chr12:23728772:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KYM1_SOFT_TISSUE	1	1	0.0235	TRUE	0	0	0	1	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	VPS35--NETO2	2	0	VPS35	1388	chr16:46723043:-	NETO2	33009	chr16:47117712:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-,NETO2->chr16:47111614-47177908:-,neuropilin_and_tolloid_like_2	KYM1_SOFT_TISSUE	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	NAALADL2--NLGN1	1	3	NAALADL2	4000	chr3:174177102:+	NLGN1	58131	chr3:173993105:+	ONLY_REF_SPLICE	YES	1	24	0.8	0.14	0.0117	0.0352	NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+,NLGN1->chr3:173114074-174004434:+,neuroligin_1	KYM1_SOFT_TISSUE	0.14	0.8	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	AL035610.2--AP001604.3	1	1	AL035610.2	7972	chr21:29535921:-	AP001604.3	16956	chr21:28771893:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0117	0.0117	AL035610.2->chr21:29488413-29600986:-,AP001604.3->chr21:28731204-28820898:-	KYM1_SOFT_TISSUE	1	1	0.0234	TRUE	0	2	0	3	2	TRUE	ACH-000607
KYM1_SOFT_TISSUE	ATRX--PGK1	1	1	ATRX	1235	chrX:77041468:-	PGK1	52000	chrX:77365364:+	ONLY_REF_SPLICE	YES	65	1003	0.03	0	0.0117	0.0117	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1	KYM1_SOFT_TISSUE	0	0.03	0.0234	FALSE	0	1	0	9	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	CTD-2251F13.1--PRKD1	1	1	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	12223	chr14:30660656:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0117	0.0117	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	KYM1_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	4	0	TRUE	ACH-000607
KYM1_SOFT_TISSUE	HS2ST1--SEP15	1	1	HS2ST1	1513	chr1:87380843:+	SEP15	28222	chr1:87346408:-	ONLY_REF_SPLICE	NO	311	1043	0.01	0	0.0117	0.0117	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	KYM1_SOFT_TISSUE	0	0.01	0.0234	FALSE	0	3	0	8	1	FALSE	ACH-000607
KYM1_SOFT_TISSUE	MICAL2--PARVA	1	1	MICAL2	11476	chr11:12183966:+	PARVA	61348	chr11:12518005:+	ONLY_REF_SPLICE	YES	273	67	0.01	0.03	0.0117	0.0117	{Klijn_CCL:Kidney=1},MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2,PARVA->chr11:12398732-12552348:+,parvin_alpha	KYM1_SOFT_TISSUE	0.01	0.03	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	SEP15--CABP1	1	1	SEP15	2787	chr1:87368964:-	CABP1	17362	chr12:121097681:+	ONLY_REF_SPLICE	YES	1166	627	0	0	0.0117	0.0117	SEP15->chr1:87328132-87380107:-,CABP1->calcium_binding_protein_1,chr12:121078355-121105127:+	KYM1_SOFT_TISSUE	0	0	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000607
KYM1_SOFT_TISSUE	SPTAN1--RAB17	1	1	SPTAN1	38307	chr9:131386766:+	RAB17	55032	chr2:238486025:-	ONLY_REF_SPLICE	YES	325	355	0.01	0.01	0.0117	0.0117	SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1,RAB17->RAB17,_member_RAS_oncogene_family,chr2:238482965-238510257:-	KYM1_SOFT_TISSUE	0.01	0.01	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000607
NCIH838_LUNG	PPIA--OGDH	759	232	PPIA	1114	chr7:44836392:+	OGDH	26821	chr7:44733424:+	ONLY_REF_SPLICE	YES	1247	62	0.44	0.94	6.2828	1.9204	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[87614],PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A,OGDH->chr7:44646171-44748665:+,oxoglutarate_dehydrogenase	NCIH838_LUNG	0.44	0.94	8.2032	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	ACBD6--RABGAP1L	226	61	ACBD6	7351	chr1:180366651:-	RABGAP1L	53724	chr1:174926594:+	ONLY_REF_SPLICE	YES	238	20	0.55	0.93	1.8708	0.5049	ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-,RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+	NCIH838_LUNG	0.55	0.93	2.3757	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	TIMM23B--LINC00843	122	44	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.98	1.0099	0.3642	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH838_LUNG	0.98	1	1.3741	TRUE	508	994	45	981	0	FALSE	ACH-000416
NCIH838_LUNG	PLXDC1--TAF13	132	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0927	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH838_LUNG	1	1	1.0927	TRUE	7	10	0	216	0	FALSE	ACH-000416
NCIH838_LUNG	BMPR2--TYW5	119	36	BMPR2	3957	chr2:203332412:+	TYW5	37653	chr2:200804856:-	ONLY_REF_SPLICE	YES	28	61	0.85	0.72	0.9851	0.298	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,TYW5->chr2:200794698-200820459:-,tRNA-yW_synthesizing_protein_5	NCIH838_LUNG	0.72	0.85	1.2831	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	MLLT3--TMIGD1	83	67	MLLT3	5117	chr9:20448121:-	TMIGD1	28606	chr17:28656547:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6871	0.5546	MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3,TMIGD1->chr17:28643351-28661077:-,transmembrane_and_immunoglobulin_domain_containing_1	NCIH838_LUNG	1	1	1.2417	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	TIMM23--RP11-464F9.1	74	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	517	6	0.13	0.93	0.6126	0.0414	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH838_LUNG	0.13	0.93	0.654	TRUE	519	3926	326	965	0	FALSE	ACH-000416
NCIH838_LUNG	CDH13--RP11-22H5.2	57	13	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	4	1	0.95	0.99	0.4718	0.1076	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH838_LUNG	0.95	0.99	0.5794	FALSE	14	31	0	36	0	FALSE	ACH-000416
NCIH838_LUNG	C15orf57--CBX3	48	43	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	80	87	0.53	0.51	0.3973	0.3559	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH838_LUNG	0.51	0.53	0.7532	TRUE	267	562	48	632	0	FALSE	ACH-000416
NCIH838_LUNG	KANSL1--ARL17B	45	38	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	18	43	0.82	0.66	0.3725	0.3146	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH838_LUNG	0.66	0.82	0.6871	TRUE	181	1564	124	196	0	FALSE	ACH-000416
NCIH838_LUNG	CDH13--DDX19B	30	17	CDH13	1335	chr16:82660742:+	DDX19B	40238	chr16:70346512:+	ONLY_REF_SPLICE	YES	4	249	0.92	0.16	0.2483	0.1407	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	NCIH838_LUNG	0.16	0.92	0.389	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-ATP8	30	4	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2094	5	0.02	0.87	0.2483	0.0331	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH838_LUNG	0.02	0.87	0.2814	FALSE	43	37	8	105	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND4L--MT-RNR2	29	2	MT-ND4L	1159	chrM:10628:+	MT-RNR2	4852	chrM:2225:+	INCL_NON_REF_SPLICE	YES	946	13150	0.03	0	0.2401	0.0166	LOCAL_REARRANGEMENT:+:[7241],MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH838_LUNG	0	0.03	0.2567	FALSE	17	32	5	7	0	FALSE	ACH-000416
NCIH838_LUNG	MT-TA--MT-TC	28	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2318	0.0083	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH838_LUNG	1	1	0.2401	FALSE	462	80	0	856	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-ATP8	21	19	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	9	0	0.82	1	0.1738	0.1573	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH838_LUNG	0.82	1	0.3311	FALSE	43	37	8	105	0	FALSE	ACH-000416
NCIH838_LUNG	C15orf57--CBX3	19	25	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	82	92	0.35	0.32	0.1573	0.2069	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH838_LUNG	0.32	0.35	0.3642	TRUE	267	562	48	632	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND4--MT-ND4L	4	78	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	7	1	0.92	0.99	0.0331	0.6457	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH838_LUNG	0.92	0.99	0.6788	FALSE	344	826	44	306	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND4--MT-ND4L	3	78	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	12	1	0.87	0.99	0.0248	0.6457	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH838_LUNG	0.87	0.99	0.6705	FALSE	344	826	44	306	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND4--MT-ND4L	3	76	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	3	0	0.96	1	0.0248	0.6291	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH838_LUNG	0.96	1	0.6539	FALSE	344	826	44	306	0	FALSE	ACH-000416
NCIH838_LUNG	AP003900.6--AC008132.1	18	11	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	6	0	0.83	1	0.149	0.0911	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH838_LUNG	0.83	1	0.2401	TRUE	1	1	0	28	1	FALSE	ACH-000416
NCIH838_LUNG	MT-ND4--MT-ND4L	6	52	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0497	0.4304	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH838_LUNG	0.97	1	0.4801	FALSE	344	821	44	306	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-RNR2	10	30	MT-ND5	2641	chrM:13977:+	MT-RNR2	5820	chrM:1678:+	INCL_NON_REF_SPLICE	YES	2047	0	0.02	1	0.0828	0.2483	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH838_LUNG	0.02	1	0.3311	FALSE	4	13	1	9	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-RNR2	4	47	MT-ND5	2788	chrM:14124:+	MT-RNR2	5841	chrM:1699:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0.3891	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH838_LUNG	1	1	0.4222	FALSE	4	13	1	9	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-RNR2	6	37	MT-ND5	2718	chrM:14054:+	MT-RNR2	5841	chrM:1699:+	INCL_NON_REF_SPLICE	YES	19	0	0.69	1	0.0497	0.3063	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH838_LUNG	0.69	1	0.356	FALSE	4	13	1	9	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-RNR2	6	37	MT-ND5	2712	chrM:14048:+	MT-RNR2	5832	chrM:1690:+	INCL_NON_REF_SPLICE	YES	29	0	0.6	1	0.0497	0.3063	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH838_LUNG	0.6	1	0.356	FALSE	4	13	1	9	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-RNR2	7	29	MT-ND5	2813	chrM:14149:+	MT-RNR2	6390	chrM:2248:+	INCL_NON_REF_SPLICE	YES	0	12475	1	0	0.0579	0.2401	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH838_LUNG	0	1	0.298	FALSE	4	13	1	9	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-ATP8	13	2	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6016	59	0	0.2	0.1076	0.0166	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH838_LUNG	0	0.2	0.1242	FALSE	43	37	8	105	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-RNR2	6	23	MT-ND5	2687	chrM:14023:+	MT-RNR2	6367	chrM:2225:+	INCL_NON_REF_SPLICE	YES	914	13149	0.03	0	0.0497	0.1904	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH838_LUNG	0	0.03	0.2401	FALSE	4	13	1	9	0	FALSE	ACH-000416
NCIH838_LUNG	BMPR2--TYW5	5	23	BMPR2	3957	chr2:203332412:+	TYW5	38698	chr2:200803793:-	ONLY_REF_SPLICE	YES	28	61	0.5	0.31	0.0414	0.1904	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,TYW5->chr2:200794698-200820459:-,tRNA-yW_synthesizing_protein_5	NCIH838_LUNG	0.31	0.5	0.2318	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-ATP8	5	23	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0.1904	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH838_LUNG	1	1	0.2318	FALSE	43	37	8	105	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-RNR2	3	31	MT-ND5	2752	chrM:14088:+	MT-RNR2	6001	chrM:1859:+	INCL_NON_REF_SPLICE	YES	2	10138	0.94	0	0.0248	0.2566	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH838_LUNG	0	0.94	0.2814	FALSE	4	13	1	9	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-RNR2	4	27	MT-ND5	2634	chrM:13970:+	MT-RNR2	5826	chrM:1684:+	INCL_NON_REF_SPLICE	YES	2146	0	0.01	1	0.0331	0.2235	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH838_LUNG	0.01	1	0.2566	FALSE	4	13	1	9	0	FALSE	ACH-000416
NCIH838_LUNG	ASCC1--DNAJB12	9	6	ASCC1	10097	chr10:73956569:-	DNAJB12	26732	chr10:74104885:-	ONLY_REF_SPLICE	YES	111	122	0.12	0.11	0.0745	0.0497	ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,DNAJB12->DnaJ_heat_shock_protein_family_(Hsp40)_member_B12,chr10:74092588-74114988:-	NCIH838_LUNG	0.11	0.12	0.1242	TRUE	0	0	0	2	0	TRUE	ACH-000416
NCIH838_LUNG	CDH13--RP11-22H5.2	6	18	CDH13	2482	chr16:82671372:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	4	1	0.86	0.96	0.0497	0.149	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH838_LUNG	0.86	0.96	0.1987	FALSE	0	5	0	7	0	FALSE	ACH-000416
NCIH838_LUNG	C15orf57--CBX3	4	25	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	82	91	0.26	0.24	0.0331	0.2069	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH838_LUNG	0.24	0.26	0.24	TRUE	267	562	48	632	0	FALSE	ACH-000416
NCIH838_LUNG	CDH13--RP11-22H5.2	5	21	CDH13	5791	chr16:82738771:+	RP11-22H5.2	41963	chr16:82862870:+	INCL_NON_REF_SPLICE	YES	2	1	0.93	0.96	0.0414	0.1738	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH838_LUNG	0.93	0.96	0.2152	FALSE	0	1	0	4	0	FALSE	ACH-000416
NCIH838_LUNG	CDH13--RP11-22H5.2	4	25	CDH13	7013	chr16:82753080:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	1	1	0.97	0.97	0.0331	0.2069	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH838_LUNG	0.97	0.97	0.24	FALSE	1	1	0	8	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-RNR2	5	21	MT-ND5	2680	chrM:14016:+	MT-RNR2	6360	chrM:2218:+	INCL_NON_REF_SPLICE	YES	1137	13361	0.02	0	0.0414	0.1738	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH838_LUNG	0	0.02	0.2152	FALSE	4	13	1	9	0	FALSE	ACH-000416
NCIH838_LUNG	FOCAD--ASIC2	9	4	FOCAD	1518	chr9:20658825:+	ASIC2	71103	chr17:31416008:-	ONLY_REF_SPLICE	YES	6	0	0.68	1	0.0745	0.0331	FOCAD->chr9:20658308-20995954:+,focadhesin,ASIC2->acid_sensing_ion_channel_subunit_2,chr17:31340105-32501983:-	NCIH838_LUNG	0.68	1	0.1076	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	WDPCP--AC009501.4	9	3	WDPCP	6186	chr2:63815331:-	AC009501.4	43544	chr2:63273782:-	ONLY_REF_SPLICE	YES	5	0	0.71	1	0.0745	0.0248	NEIGHBORS[72743],WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-,AC009501.4->chr2:63271057-63275775:-	NCIH838_LUNG	0.71	1	0.0993	FALSE	0	0	0	1	0	FALSE	ACH-000416
NCIH838_LUNG	CDH13--RP11-22H5.2	3	26	CDH13	8102	chr16:82756714:+	RP11-22H5.2	41963	chr16:82862870:+	INCL_NON_REF_SPLICE	YES	1	1	0.97	0.97	0.0248	0.2152	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH838_LUNG	0.97	0.97	0.24	FALSE	0	0	0	3	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-ATP8	4	21	MT-ND5	2792	chrM:14128:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0.1738	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH838_LUNG	1	1	0.2069	FALSE	43	37	8	105	0	FALSE	ACH-000416
NCIH838_LUNG	CDH13--RP11-22H5.2	5	16	CDH13	1335	chr16:82660742:+	RP11-22H5.2	40848	chr16:82860194:+	INCL_NON_REF_SPLICE	YES	4	1	0.84	0.95	0.0414	0.1324	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH838_LUNG	0.84	0.95	0.1738	FALSE	0	0	0	1	0	FALSE	ACH-000416
NCIH838_LUNG	REV3L--RPL28	9	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0745	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH838_LUNG	1	1	0.0745	TRUE	22	156	2	142	0	FALSE	ACH-000416
NCIH838_LUNG	CDH13--DDX19B	3	22	CDH13	2482	chr16:82671372:+	DDX19B	40238	chr16:70346512:+	ONLY_REF_SPLICE	YES	4	249	0.86	0.09	0.0248	0.1821	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	NCIH838_LUNG	0.09	0.86	0.2069	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	CDH13--RP11-22H5.2	1	30	CDH13	7013	chr16:82753080:+	RP11-22H5.2	37471	chr16:82856817:+	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.0083	0.2483	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH838_LUNG	0.97	1	0.2566	FALSE	0	0	0	1	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND6--MT-TE	8	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0662	0.0166	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH838_LUNG	0.91	1	0.0828	FALSE	499	1288	110	792	0	FALSE	ACH-000416
NCIH838_LUNG	TYW5--ALS2CR11	8	2	TYW5	10942	chr2:200803656:-	ALS2CR11	42191	chr2:202352625:-	ONLY_REF_SPLICE	YES	42	1	0.19	0.91	0.0662	0.0166	TYW5->chr2:200794698-200820459:-,tRNA-yW_synthesizing_protein_5,ALS2CR11->amyotrophic_lateral_sclerosis_2_chromosome_region_candidate_11,chr2:202352148-202483901:-	NCIH838_LUNG	0.19	0.91	0.0828	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	CDH13--RP11-22H5.2	4	17	CDH13	1335	chr16:82660742:+	RP11-22H5.2	37471	chr16:82856817:+	ONLY_REF_SPLICE	YES	4	0	0.84	1	0.0331	0.1407	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH838_LUNG	0.84	1	0.1738	FALSE	0	1	0	7	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND4--MT-ND4L	3	21	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.96	0.0248	0.1738	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH838_LUNG	0.96	1	0.1986	FALSE	344	821	44	306	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-RNR2	3	21	MT-ND5	2251	chrM:13587:+	MT-RNR2	5849	chrM:1707:+	INCL_NON_REF_SPLICE	YES	1978	0	0.01	1	0.0248	0.1738	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH838_LUNG	0.01	1	0.1986	FALSE	4	14	1	9	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-ATP8	3	20	MT-ND5	2813	chrM:14149:+	MT-ATP8	5870	chrM:8423:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0248	0.1656	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH838_LUNG	1	1	0.1904	FALSE	43	37	8	105	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-ATP8	3	20	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0248	0.1656	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH838_LUNG	1	1	0.1904	FALSE	43	37	8	105	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-RNR2	4	16	MT-ND5	1969	chrM:13305:+	MT-RNR2	5841	chrM:1699:+	INCL_NON_REF_SPLICE	YES	4785	0	0	1	0.0331	0.1324	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH838_LUNG	0	1	0.1655	FALSE	4	14	1	9	0	FALSE	ACH-000416
NCIH838_LUNG	JSRP1--RPS28	6	5	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0497	0.0414	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH838_LUNG	0.92	1	0.0911	TRUE	0	1	0	84	1	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-ATP8	3	17	MT-ND5	2645	chrM:13981:+	MT-ATP8	5868	chrM:8421:+	INCL_NON_REF_SPLICE	YES	2040	0	0.01	1	0.0248	0.1407	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH838_LUNG	0.01	1	0.1655	FALSE	43	37	8	105	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-ATP8	3	17	MT-ND5	2644	chrM:13980:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	2000	0	0.01	1	0.0248	0.1407	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH838_LUNG	0.01	1	0.1655	FALSE	43	37	8	105	0	FALSE	ACH-000416
NCIH838_LUNG	AP003900.6--AC008132.1	5	8	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	6	1	0.68	0.93	0.0414	0.0662	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH838_LUNG	0.68	0.93	0.1076	TRUE	0	0	0	11	0	TRUE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-CO3	3	15	MT-ND5	2877	chrM:14213:+	MT-CO3	5951	chrM:9345:+	INCL_NON_REF_SPLICE	NO	0	5320	1	0	0.0248	0.1242	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH838_LUNG	0	1	0.149	FALSE	0	15	2	17	0	FALSE	ACH-000416
NCIH838_LUNG	MT-TA--MT-TC	6	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0.0166	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH838_LUNG	1	1	0.0663	FALSE	462	80	0	856	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND6--MT-TE	6	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0.0083	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH838_LUNG	1	1	0.058	FALSE	499	1288	110	792	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-RNR2	3	12	MT-ND5	1627	chrM:12963:+	MT-RNR2	5825	chrM:1683:+	INCL_NON_REF_SPLICE	YES	2653	0	0.01	1	0.0248	0.0993	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH838_LUNG	0.01	1	0.1241	FALSE	3	12	1	7	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH838_LUNG	1	1	0.0497	FALSE	499	1288	110	792	0	FALSE	ACH-000416
NCIH838_LUNG	WTAPP1--RUVBL1	6	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0497	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	NCIH838_LUNG	1	1	0.0497	TRUE	9	252	6	66	0	FALSE	ACH-000416
NCIH838_LUNG	CDH13--DDX19B	2	15	CDH13	2482	chr16:82671372:+	DDX19B	41384	chr16:70348805:+	ONLY_REF_SPLICE	YES	4	194	0.81	0.08	0.0166	0.1242	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	NCIH838_LUNG	0.08	0.81	0.1408	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	CDH13--DDX19B	3	11	CDH13	1335	chr16:82660742:+	DDX19B	41384	chr16:70348805:+	ONLY_REF_SPLICE	YES	4	194	0.78	0.07	0.0248	0.0911	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	NCIH838_LUNG	0.07	0.78	0.1159	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	CDH13--RP11-22H5.2	1	19	CDH13	3588	chr16:82673070:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	3	1	0.87	0.95	0.0083	0.1573	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH838_LUNG	0.87	0.95	0.1656	FALSE	0	2	0	10	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND4--MT-ND4L	4	7	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	12	0	0.48	1	0.0331	0.0579	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH838_LUNG	0.48	1	0.091	FALSE	344	826	44	306	0	FALSE	ACH-000416
NCIH838_LUNG	RP11-680G10.1--GSE1	5	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	11	1	0.42	0.0414	0.0248	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH838_LUNG	0.42	1	0.0662	TRUE	458	1351	185	561	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-CO3	5	2	MT-ND5	2607	chrM:13943:+	MT-CO3	6185	chrM:9579:+	INCL_NON_REF_SPLICE	YES	2357	10378	0	0	0.0414	0.0166	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH838_LUNG	0	0	0.058	FALSE	0	15	2	18	0	FALSE	ACH-000416
NCIH838_LUNG	RP11-96H19.1--RP11-446N19.1	5	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0414	0.0083	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH838_LUNG	1	1	0.0497	FALSE	407	2205	196	549	0	FALSE	ACH-000416
NCIH838_LUNG	CDH13--DDX19B	1	16	CDH13	3588	chr16:82673070:+	DDX19B	41384	chr16:70348805:+	ONLY_REF_SPLICE	YES	3	194	0.85	0.08	0.0083	0.1324	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	NCIH838_LUNG	0.08	0.85	0.1407	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	KANSL1--ARL17B	2	11	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	27	43	0.33	0.23	0.0166	0.0911	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH838_LUNG	0.23	0.33	0.1077	TRUE	105	90	7	93	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND6--MT-TE	4	3	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0331	0.0248	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH838_LUNG	1	1	0.0579	FALSE	499	1288	110	792	0	FALSE	ACH-000416
NCIH838_LUNG	PLXDC1--TAF13	3	7	PLXDC1	27520	chr17:37222840:-	TAF13	38540	chr1:109605627:-	INCL_NON_REF_SPLICE	YES	0	530	1	0.02	0.0248	0.0579	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH838_LUNG	0.02	1	0.0827	TRUE	7	10	0	216	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-CO3	3	6	MT-ND5	2793	chrM:14129:+	MT-CO3	6199	chrM:9593:+	INCL_NON_REF_SPLICE	YES	0	9683	1	0	0.0248	0.0497	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH838_LUNG	0	1	0.0745	FALSE	0	15	2	17	0	FALSE	ACH-000416
NCIH838_LUNG	EMC2--EIF3E	4	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0331	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	NCIH838_LUNG	1	1	0.0331	TRUE	0	0	0	12	0	TRUE	ACH-000416
NCIH838_LUNG	JSRP1--RPS28	3	4	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0248	0.0331	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH838_LUNG	0.88	1	0.0579	TRUE	0	1	0	84	1	FALSE	ACH-000416
NCIH838_LUNG	LINC00473--PDE10A	3	4	LINC00473	1520	chr6:166401017:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	74	0	0.09	1	0.0248	0.0331	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	NCIH838_LUNG	0.09	1	0.0579	FALSE	6	13	0	15	0	FALSE	ACH-000416
NCIH838_LUNG	RP11-123O10.4--GRIP1	4	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0331	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH838_LUNG	1	1	0.0331	FALSE	416	2512	207	587	0	FALSE	ACH-000416
NCIH838_LUNG	TULP4--RP11-732M18.3	4	0	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0331	0	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	NCIH838_LUNG	1	1	0.0331	TRUE	126	140	6	21	0	FALSE	ACH-000416
NCIH838_LUNG	AP003900.6--AC008132.1	3	3	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	6	4	0.5	0.6	0.0248	0.0248	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH838_LUNG	0.5	0.6	0.0496	TRUE	0	0	0	13	0	TRUE	ACH-000416
NCIH838_LUNG	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0248	0.0248	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH838_LUNG	1	1	0.0496	FALSE	462	80	0	856	0	FALSE	ACH-000416
NCIH838_LUNG	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	31	1	0.14	0.0248	0.0166	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH838_LUNG	0.14	1	0.0414	TRUE	465	1949	224	605	0	FALSE	ACH-000416
NCIH838_LUNG	TYW5--ALS2CR11	3	2	TYW5	10942	chr2:200803656:-	ALS2CR11	37600	chr2:202359482:-	ONLY_REF_SPLICE	YES	42	0	0.11	1	0.0248	0.0166	TYW5->chr2:200794698-200820459:-,tRNA-yW_synthesizing_protein_5,ALS2CR11->amyotrophic_lateral_sclerosis_2_chromosome_region_candidate_11,chr2:202352148-202483901:-	NCIH838_LUNG	0.11	1	0.0414	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-CO3	3	1	MT-ND5	2591	chrM:13927:+	MT-CO3	6171	chrM:9565:+	INCL_NON_REF_SPLICE	NO	2461	10829	0	0	0.0248	0.0083	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH838_LUNG	0	0	0.0331	FALSE	0	15	2	18	0	FALSE	ACH-000416
NCIH838_LUNG	MT-ND5--MT-RNR2	3	1	MT-ND5	1066	chrM:12402:+	MT-RNR2	5841	chrM:1699:+	INCL_NON_REF_SPLICE	NO	406	0	0.01	1	0.0248	0.0083	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH838_LUNG	0.01	1	0.0331	FALSE	1	4	1	7	0	FALSE	ACH-000416
NCIH838_LUNG	BMPR2--ALS2CR11	2	4	BMPR2	3957	chr2:203332412:+	ALS2CR11	51231	chr2:202352625:-	ONLY_REF_SPLICE	YES	28	1	0.18	0.86	0.0166	0.0331	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,ALS2CR11->amyotrophic_lateral_sclerosis_2_chromosome_region_candidate_11,chr2:202352148-202483901:-	NCIH838_LUNG	0.18	0.86	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	DNAJC1--CLASP2	3	0	DNAJC1	3193	chr10:22217435:-	CLASP2	26105	chr3:33705007:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	DNAJC1->DnaJ_heat_shock_protein_family_(Hsp40)_member_C1,chr10:22045466-22292698:-,CLASP2->chr3:33537737-33759848:-,cytoplasmic_linker_associated_protein_2	NCIH838_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0248	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH838_LUNG	1	1	0.0248	FALSE	499	1288	110	792	0	FALSE	ACH-000416
NCIH838_LUNG	NDUFA4--PHF14	3	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH838_LUNG	1	1	0.0248	TRUE	19	32	3	60	0	FALSE	ACH-000416
NCIH838_LUNG	DNER--TRIP12	2	3	DNER	1411	chr2:230578864:-	TRIP12	58131	chr2:230643706:-	ONLY_REF_SPLICE	YES	0	156	1	0.03	0.0166	0.0248	LOCAL_REARRANGEMENT:-:[49280],DNER->chr2:230222345-230579274:-,delta/notch_like_EGF_repeat_containing,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	NCIH838_LUNG	0.03	1	0.0414	TRUE	0	0	0	1	0	FALSE	ACH-000416
NCIH838_LUNG	PPIA--OGDH	1	7	PPIA	1114	chr7:44836392:+	OGDH	28977	chr7:44736028:+	ONLY_REF_SPLICE	NO	1247	597	0.01	0.01	0.0083	0.0579	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[87614],PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A,OGDH->chr7:44646171-44748665:+,oxoglutarate_dehydrogenase	NCIH838_LUNG	0.01	0.01	0.0662	FALSE	0	0	0	1	0	FALSE	ACH-000416
NCIH838_LUNG	RP11-435B5.4--TTLL7	2	3	RP11-435B5.4	2843	chr1:143465380:-	TTLL7	21229	chr1:84417659:-	ONLY_REF_SPLICE	YES	31	7	0.14	0.42	0.0166	0.0248	RP11-435B5.4->chr1:143354963-143467632:-,TTLL7->chr1:84330711-84464833:-,tubulin_tyrosine_ligase_like_7	NCIH838_LUNG	0.14	0.42	0.0414	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	CDH13--DDX19B	1	5	CDH13	1335	chr16:82660742:+	DDX19B	42438	chr16:70349872:+	ONLY_REF_SPLICE	NO	4	181	0.6	0.03	0.0083	0.0414	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	NCIH838_LUNG	0.03	0.6	0.0497	TRUE	0	0	0	1	0	FALSE	ACH-000416
NCIH838_LUNG	RPS16--ANXA1	2	1	RPS16	3427	chr19:39924162:-	ANXA1	10731	chr9:75774245:+	ONLY_REF_SPLICE	YES	4429	2188	0	0	0.0166	0.0083	RPS16->chr19:39923847-39926588:-,ribosomal_protein_S16,ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+	NCIH838_LUNG	0	0	0.0249	FALSE	0	0	0	1	0	FALSE	ACH-000416
NCIH838_LUNG	AC113189.5--AKT2	2	0	AC113189.5	1155	chr17:7487236:-	AKT2	16609	chr19:40771258:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	AC113189.5->chr17:7485282-7487390:-,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	ACTN4--DENND3	2	0	ACTN4	1259	chr19:39138547:+	DENND3	35008	chr8:142160933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,DENND3->DENN_domain_containing_3,chr8:142127377-142205907:+	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	AFMID--ATP6V0E1	2	0	AFMID	2467	chr17:76187141:+	ATP6V0E1	17822	chr5:172461402:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	AFMID->arylformamidase,chr17:76183398-76203782:+,ATP6V0E1->ATPase_H+_transporting_V0_subunit_e1,chr5:172410760-172462448:+	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	BRWD1--FAU	2	0	BRWD1	31046	chr21:40590078:-	FAU	58433	chr11:64888278:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,FAU->Finkel-Biskis-Reilly_murine_sarcoma_virus_(FBR-MuSV)_ubiquitously_expressed,chr11:64888100-64889945:-	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	DANCR--ITGB3BP	2	0	DANCR	1530	chr4:53579126:+	ITGB3BP	18619	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	9	0	TRUE	ACH-000416
NCIH838_LUNG	DNAJC24--TASP1	2	0	DNAJC24	2020	chr11:31392406:+	TASP1	38389	chr20:13398168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,TASP1->chr20:13246709-13619587:-,taspase_1	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	EIF2B5--SRRM1	2	0	EIF2B5	2699	chr3:183854524:+	SRRM1	27077	chr1:24977900:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	EIF2B5->chr3:183852826-184402546:+,eukaryotic_translation_initiation_factor_2B_subunit_epsilon,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	GPBP1L1--EIF3E	2	0	GPBP1L1	3538	chr1:46151248:-	EIF3E	38569	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	HIST1H2BC--LRIG2	2	0	HIST1H2BC	1412	chr6:26123743:-	LRIG2	7272	chr1:113633940:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	HIST1H2BC->chr6:26115101-26124154:-,histone_cluster_1,_H2bc,LRIG2->chr1:113615831-113674882:+,leucine-rich_repeats_and_immunoglobulin_like_domains_2	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	IPO11--RPS23	2	0	IPO11	13235	chr5:61770291:+	RPS23	47045	chr5:81572074:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	IPO11->chr5:61699799-61924409:+,importin_11,RPS23->chr5:81569177-81574396:-,ribosomal_protein_S23	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	KPNA6--PPFIBP1	2	0	KPNA6	6202	chr1:32623962:+	PPFIBP1	37141	chr12:27802943:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	KPNA6->chr1:32573639-32642169:+,karyopherin_subunit_alpha_6,PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	LINC00473--PDE10A	1	4	LINC00473	9097	chr6:166324296:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.0083	0.0331	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	NCIH838_LUNG	0.36	1	0.0414	FALSE	2	5	0	11	0	FALSE	ACH-000416
NCIH838_LUNG	MINOS1--CAPZB	2	0	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	NCIH838_LUNG	1	1	0.0166	TRUE	2	7	0	21	0	FALSE	ACH-000416
NCIH838_LUNG	MLLT3--TMIGD1	2	0	MLLT3	5117	chr9:20448121:-	TMIGD1	29885	chr17:28652112:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3,TMIGD1->chr17:28643351-28661077:-,transmembrane_and_immunoglobulin_domain_containing_1	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	MLLT3--TMIGD1	2	0	MLLT3	5117	chr9:20448121:-	TMIGD1	32268	chr17:28644251:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3,TMIGD1->chr17:28643351-28661077:-,transmembrane_and_immunoglobulin_domain_containing_1	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	MRAS--WDR41	2	0	MRAS	4937	chr3:138091918:+	WDR41	24103	chr5:76760634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	MRAS->chr3:138066539-138124375:+,muscle_RAS_oncogene_homolog,WDR41->WD_repeat_domain_41,chr5:76721795-76916436:-	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	MYO1C--PITPNA	2	0	MYO1C	2213	chr17:1394894:-	PITPNA	32388	chr17:1451681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[24906],MYO1C->chr17:1367392-1396106:-,myosin_IC,PITPNA->chr17:1421012-1466110:-,phosphatidylinositol_transfer_protein_alpha	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	N4BP1--NETO2	2	0	N4BP1	2735	chr16:48643686:-	NETO2	21259	chr16:47165936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	N4BP1->NEDD4_binding_protein_1,chr16:48572637-48654059:-,NETO2->chr16:47111614-47177908:-,neuropilin_and_tolloid_like_2	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	N4BP2--KANSL2	2	0	N4BP2	2302	chr4:40075171:+	KANSL2	43082	chr12:49048843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	N4BP2->NEDD4_binding_protein_2,chr4:40058446-40159872:+,KANSL2->KAT8_regulatory_NSL_complex_subunit_2,chr12:49047184-49076021:-	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	PPP2R5E--RPL17	2	0	PPP2R5E	2760	chr14:64006247:-	RPL17	27902	chr18:47017297:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	PPP2R5E->chr14:63838075-64010092:-,protein_phosphatase_2_regulatory_subunit_B',_epsilon,RPL17->chr18:47014851-47018906:-,ribosomal_protein_L17	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	PSMD13--HP1BP3	2	0	PSMD13	5571	chr11:247448:+	HP1BP3	20389	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	PSMD13->chr11:236546-252983:+,proteasome_26S_subunit,_non-ATPase_13,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	PSORS1C1--HMGB1	2	0	PSORS1C1	1142	chr6:31082668:+	HMGB1	19646	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	PSORS1C1->chr6:31082527-31107869:+,psoriasis_susceptibility_1_candidate_1,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	RC3H2--DNMBP	2	0	RC3H2	9887	chr9:125639750:-	DNMBP	53234	chr10:101640118:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	RC3H2->chr9:125606835-125667620:-,ring_finger_and_CCCH-type_domains_2,DNMBP->chr10:101635334-101769676:-,dynamin_binding_protein	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	RP11-58C22.1--TCF25	2	0	RP11-58C22.1	2618	chr16:76669520:+	TCF25	9050	chr16:89949759:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	RP11-58C22.1->chr16:76587314-76669520:+,TCF25->chr16:89940000-89977792:+,transcription_factor_25	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH838_LUNG	1	1	0.0166	FALSE	515	4851	409	746	0	FALSE	ACH-000416
NCIH838_LUNG	TEAD1--PARVA	2	0	TEAD1	4496	chr11:12785981:+	PARVA	32787	chr11:12495292:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	NCIH838_LUNG	1	1	0.0166	TRUE	3	5	0	10	0	FALSE	ACH-000416
NCIH838_LUNG	TOPORS--VAMP3	2	0	TOPORS	2315	chr9:32550772:-	VAMP3	13084	chr1:7837220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	TOPORS->Oncogene{Bushman},TOP1_binding_arginine/serine_rich_protein,chr9:32540542-32552551:-,VAMP3->chr1:7831329-7841492:+,vesicle_associated_membrane_protein_3	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	UBAP1--PHF20	2	0	UBAP1	1236	chr9:34179238:+	PHF20	17207	chr20:34388016:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	UCHL1--GIPC1	2	0	UCHL1	1597	chr4:41259026:+	GIPC1	15134	chr19:14593818:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	UCHL1->chr4:41258430-41270472:+,ubiquitin_C-terminal_hydrolase_L1,GIPC1->GIPC_PDZ_domain_containing_family_member_1,chr19:14588572-14606944:-	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	WDR41--TBCA	2	0	WDR41	7042	chr5:76785282:-	TBCA	32720	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},LOCAL_REARRANGEMENT:-:[70555],WDR41->WD_repeat_domain_41,chr5:76721795-76916436:-,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	NCIH838_LUNG	1	1	0.0166	TRUE	1	1	0	3	0	TRUE	ACH-000416
NCIH838_LUNG	ZC3H4--CCDC61	2	0	ZC3H4	2199	chr19:47615681:-	CCDC61	30293	chr19:46519952:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	ZC3H4->chr19:47567444-47617009:-,zinc_finger_CCCH-type_containing_4,CCDC61->chr19:46498339-46524576:+,coiled-coil_domain_containing_61	NCIH838_LUNG	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	RP11-435B5.4--TTLL7	1	3	RP11-435B5.4	2843	chr1:143465380:-	TTLL7	20818	chr1:84418070:-	ONLY_REF_SPLICE	YES	31	6	0.11	0.4	0.0083	0.0248	RP11-435B5.4->chr1:143354963-143467632:-,TTLL7->chr1:84330711-84464833:-,tubulin_tyrosine_ligase_like_7	NCIH838_LUNG	0.11	0.4	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000416
NCIH838_LUNG	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	2313	131	0	0.02	0.0083	0.0166	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NCIH838_LUNG	0	0.02	0.0249	FALSE	6	50	7	115	0	FALSE	ACH-000416
NCIH838_LUNG	AFF1--HSD17B11	1	1	AFF1	3385	chr4:87869723:+	HSD17B11	37810	chr4:88303514:-	ONLY_REF_SPLICE	NO	17	541	0.11	0	0.0083	0.0083	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,HSD17B11->chr4:88257762-88312538:-,hydroxysteroid_(17-beta)_dehydrogenase_11	NCIH838_LUNG	0	0.11	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000416
NCIH838_LUNG	BAZ2B--MARCH7	1	1	BAZ2B	1451	chr2:160472753:-	MARCH7	64626	chr2:160585520:+	ONLY_REF_SPLICE	YES	8	291	0.2	0.01	0.0083	0.0083	GTEx_v2:{count=4;pct=0.05%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1},LOCAL_INVERSION:-:+:[95797],BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-,MARCH7->chr2:160569000-160627538:+,membrane_associated_ring-CH-type_finger_7	NCIH838_LUNG	0.01	0.2	0.0166	FALSE	1	1	0	4	1	FALSE	ACH-000416
NCIH838_LUNG	DANCR--LDHB	1	1	DANCR	1530	chr4:53579126:+	LDHB	12776	chr12:21799950:-	ONLY_REF_SPLICE	YES	1140	11248	0	0	0.0083	0.0083	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,LDHB->chr12:21788276-21910791:-,lactate_dehydrogenase_B	NCIH838_LUNG	0	0	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000416
NCIH838_LUNG	DANCR--STAT5B	1	1	DANCR	1530	chr4:53579126:+	STAT5B	8754	chr17:40384155:-	ONLY_REF_SPLICE	YES	1140	10	0	0.17	0.0083	0.0083	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B	NCIH838_LUNG	0	0.17	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000416
NCIH838_LUNG	FAM208B--ZMYND11	1	1	FAM208B	1338	chr10:5727138:+	ZMYND11	39021	chr10:255829:+	ONLY_REF_SPLICE	YES	13	256	0.13	0.01	0.0083	0.0083	GTEx_v2:{count=1;pct=0.01%;dist=Pituitary=1},FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	NCIH838_LUNG	0.01	0.13	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000416
NCIH838_LUNG	NBR2--HNRNPC	1	1	NBR2	1161	chr17:41277787:+	HNRNPC	17570	chr14:21731495:-	ONLY_REF_SPLICE	YES	39	2187	0.05	0	0.0083	0.0083	NBR2->chr17:41277627-41305688:+,neighbor_of_BRCA1_gene_2_(non-protein_coding),HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	NCIH838_LUNG	0	0.05	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000416
NCIH838_LUNG	NPAT--ATP5J	1	1	NPAT	1143	chr11:108093227:-	ATP5J	28580	chr21:27102112:-	ONLY_REF_SPLICE	YES	40	257	0.05	0.01	0.0083	0.0083	NPAT->chr11:108027942-108093369:-,nuclear_protein,_co-activator_of_histone_transcription,ATP5J->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_F6,chr21:27088815-27107984:-	NCIH838_LUNG	0.01	0.05	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000416
NCIH838_LUNG	NRD1--SIAH1	1	1	NRD1	4417	chr1:52305898:-	SIAH1	49507	chr16:48396341:-	ONLY_REF_SPLICE	YES	332	113	0.01	0.02	0.0083	0.0083	NRD1->chr1:52254863-52344477:-,SIAH1->chr16:48390275-48482313:-,siah_E3_ubiquitin_protein_ligase_1	NCIH838_LUNG	0.01	0.02	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000416
NCIH838_LUNG	NT5C2--C11orf24	1	1	NT5C2	3325	chr10:104934615:-	C11orf24	30317	chr11:68035719:-	ONLY_REF_SPLICE	YES	221	201	0.01	0.01	0.0083	0.0083	NT5C2->5'-nucleotidase,_cytosolic_II,chr10:104845940-104953056:-,C11orf24->chr11:68028803-68039469:-,chromosome_11_open_reading_frame_24	NCIH838_LUNG	0.01	0.01	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000416
NCIH838_LUNG	OGFR--ACTB	1	1	OGFR	1196	chr20:61436382:+	ACTB	17261	chr7:5569294:-	ONLY_REF_SPLICE	YES	226	246	0.01	0.01	0.0083	0.0083	OGFR->chr20:61436187-61445352:+,opioid_growth_factor_receptor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH838_LUNG	0.01	0.01	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000416
NCIH838_LUNG	PTP4A1--EEF1A1	1	1	PTP4A1	4040	chr6:64282624:+	EEF1A1	18831	chr6:74229779:-	ONLY_REF_SPLICE	YES	669	202	0	0.01	0.0083	0.0083	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=2},PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	NCIH838_LUNG	0	0.01	0.0166	FALSE	0	1	0	2	0	FALSE	ACH-000416
NCIH838_LUNG	RPL28--IGF2R	1	1	RPL28	2349	chr19:55898061:+	IGF2R	51731	chr6:160509065:+	ONLY_REF_SPLICE	YES	3915	43	0	0.04	0.0083	0.0083	RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28,IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor	NCIH838_LUNG	0	0.04	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000416
NCIH838_LUNG	SLC30A8--EIF3H	1	1	SLC30A8	1847	chr8:117963358:+	EIF3H	27159	chr8:117738411:-	ONLY_REF_SPLICE	YES	22	1441	0.08	0	0.0083	0.0083	SLC30A8->chr8:117962512-118188953:+,solute_carrier_family_30_member_8,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	NCIH838_LUNG	0	0.08	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000416
CORL279_LUNG	BNIP3--MARCH6	200	232	BNIP3	1171	chr10:133795265:-	MARCH6	31803	chr5:10415600:+	ONLY_REF_SPLICE	YES	869	987	0.33	0.3	2.5756	2.9877	{Klijn_CCL:Lung=1},BNIP3->BCL2/adenovirus_E1B_19kDa_interacting_protein_3,Oncogene{Bushman},chr10:133781578-133795435:-,MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6	CORL279_LUNG	0.3	0.33	5.5633	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	WDR59--GINS3	67	38	WDR59	6054	chr16:74999671:-	GINS3	44260	chr16:58420525:+	ONLY_REF_SPLICE	YES	15	0	0.88	1	0.8628	0.4894	WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	CORL279_LUNG	0.88	1	1.3522	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	CHD2--AGBL1	64	38	CHD2	12938	chr15:93472321:+	AGBL1	64295	chr15:86768145:+	ONLY_REF_SPLICE	YES	84	0	0.55	1	0.8242	0.4894	{Klijn_CCL:Lung=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,AGBL1->ATP/GTP_binding_protein-like_1,chr15:86685227-87572283:+	CORL279_LUNG	0.55	1	1.3136	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	WIPF2--RAPGEFL1	58	5	WIPF2	1189	chr17:38375744:+	RAPGEFL1	22638	chr17:38337868:+	ONLY_REF_SPLICE	YES	12	48	0.84	0.57	0.7469	0.0644	LOCAL_REARRANGEMENT:+:[23648],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	CORL279_LUNG	0.57	0.84	0.8113	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	BNIP3--MARCH6	1	232	BNIP3	1171	chr10:133795265:-	MARCH6	31788	chr5:10415585:+	ONLY_REF_SPLICE	YES	869	1055	0.21	0.18	0.0129	2.9877	{Klijn_CCL:Lung=1},BNIP3->BCL2/adenovirus_E1B_19kDa_interacting_protein_3,Oncogene{Bushman},chr10:133781578-133795435:-,MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6	CORL279_LUNG	0.18	0.21	3.0006	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	CASC11--TMEM65	40	29	CASC11	1143	chr8:128746071:-	TMEM65	16518	chr8:125343033:-	ONLY_REF_SPLICE	YES	10	78	0.87	0.47	0.5151	0.3735	CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-,TMEM65->chr8:125324231-125384933:-,transmembrane_protein_65	CORL279_LUNG	0.47	0.87	0.8886	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	OR51S1--TP53I11	45	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5795	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	CORL279_LUNG	1	1	0.5795	TRUE	402	216	10	229	0	FALSE	ACH-000257
CORL279_LUNG	TIMM23B--LINC00843	28	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3606	0.2447	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CORL279_LUNG	1	1	0.6053	TRUE	508	994	45	981	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND6--MT-TE	32	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.4121	0.0129	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL279_LUNG	0.94	1	0.425	FALSE	499	1288	110	792	0	FALSE	ACH-000257
CORL279_LUNG	RP11-123O10.4--GRIP1	27	18	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	23	1	0.66	0.3477	0.2318	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CORL279_LUNG	0.66	1	0.5795	FALSE	416	2512	207	587	0	FALSE	ACH-000257
CORL279_LUNG	HSPBP1--ZSWIM6	29	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3735	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	CORL279_LUNG	1	1	0.3735	TRUE	47	32	1	28	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND6--MT-TE	27	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3477	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL279_LUNG	1	1	0.3477	FALSE	499	1288	110	792	0	FALSE	ACH-000257
CORL279_LUNG	BNIP3--MARCH6	10	62	BNIP3	1171	chr10:133795265:-	MARCH6	32985	chr5:10417382:+	ONLY_REF_SPLICE	YES	869	931	0.08	0.07	0.1288	0.7984	{Klijn_CCL:Lung=1},BNIP3->BCL2/adenovirus_E1B_19kDa_interacting_protein_3,Oncogene{Bushman},chr10:133781578-133795435:-,MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6	CORL279_LUNG	0.07	0.08	0.9272	TRUE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	BNIP3--MARCH6	15	34	BNIP3	1171	chr10:133795265:-	MARCH6	35273	chr5:10423847:+	ONLY_REF_SPLICE	YES	869	1478	0.05	0.03	0.1932	0.4379	{Klijn_CCL:Lung=1},BNIP3->BCL2/adenovirus_E1B_19kDa_interacting_protein_3,Oncogene{Bushman},chr10:133781578-133795435:-,MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6	CORL279_LUNG	0.03	0.05	0.6311	TRUE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	RP11-680G10.1--GSE1	19	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	42	1	0.36	0.2447	0.0644	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CORL279_LUNG	0.36	1	0.3091	TRUE	465	1949	224	605	0	FALSE	ACH-000257
CORL279_LUNG	TIMM23--RP11-464F9.1	17	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	201	5	0.09	0.81	0.2189	0.0515	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CORL279_LUNG	0.09	0.81	0.2704	TRUE	519	3926	326	965	0	FALSE	ACH-000257
CORL279_LUNG	MT-TA--MT-TC	17	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2189	0.0129	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL279_LUNG	1	1	0.2318	FALSE	462	80	0	856	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND4--MT-ND4L	4	40	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	15	0	0.75	1	0.0515	0.5151	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL279_LUNG	0.75	1	0.5666	FALSE	344	826	44	306	0	FALSE	ACH-000257
CORL279_LUNG	AP000525.9--LA16c-60G3.6	13	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	10	0	0.6	1	0.1674	0.0258	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	CORL279_LUNG	0.6	1	0.1932	TRUE	0	42	0	133	42	FALSE	ACH-000257
CORL279_LUNG	C1orf194--UQCR10	12	6	C1orf194	3284	chr1:109650635:-	UQCR10	8361	chr22:30163372:+	INCL_NON_REF_SPLICE	YES	22	0	0.45	1	0.1545	0.0773	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.41%,GTEx_FI:{Testis=[count:16=pct:15.2],Pituitary=[count:4=pct:7.7],Lung=[count:4=pct:2.4],Brain=[count:3=pct:0.5],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Fallopian_Tube=[count:1=pct:16.7],Thyroid=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=13;pct=0.15%;dist=Testis=12,Adipose_-_Subcutaneous=1},C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	CORL279_LUNG	0.45	1	0.2318	TRUE	26	6	0	14	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND4--MT-ND4L	7	26	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	1	0.85	0.97	0.0901	0.3348	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL279_LUNG	0.85	0.97	0.4249	FALSE	344	821	44	306	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND4--MT-ND4L	3	40	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	16	0	0.73	1	0.0386	0.5151	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL279_LUNG	0.73	1	0.5537	FALSE	344	826	44	306	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND4--MT-ND4L	3	39	MT-ND4	1110	chrM:10869:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	9	1	0.82	0.98	0.0386	0.5023	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL279_LUNG	0.82	0.98	0.5409	FALSE	344	826	44	306	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND4--MT-ND4L	12	0	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1545	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL279_LUNG	1	1	0.1545	FALSE	344	827	44	306	0	FALSE	ACH-000257
CORL279_LUNG	RP11-680G10.1--GSE1	9	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	11	1	0.62	0.1159	0.1159	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CORL279_LUNG	0.62	1	0.2318	TRUE	458	1351	185	561	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND4--MT-ND4L	11	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1417	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL279_LUNG	1	1	0.1417	FALSE	344	821	44	306	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND6--MT-TE	11	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1417	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL279_LUNG	1	1	0.1417	FALSE	499	1288	110	792	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND4--MT-ND4L	4	24	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	6618	0	0	1	0.0515	0.3091	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL279_LUNG	0	1	0.3606	FALSE	344	827	44	306	0	FALSE	ACH-000257
CORL279_LUNG	MT-TA--MT-TC	10	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1288	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL279_LUNG	1	1	0.1288	FALSE	462	80	0	856	0	FALSE	ACH-000257
CORL279_LUNG	RP4-565E6.1--HYDIN	8	8	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	3	1	0.84	0.103	0.103	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	CORL279_LUNG	0.84	1	0.206	TRUE	456	1387	91	133	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND4--MT-ND4L	8	4	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	4	0	0.75	1	0.103	0.0515	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL279_LUNG	0.75	1	0.1545	FALSE	344	821	44	306	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND4--MT-ND4L	6	8	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	13873	0	0	1	0.0773	0.103	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL279_LUNG	0	1	0.1803	FALSE	328	800	43	304	0	FALSE	ACH-000257
CORL279_LUNG	CHD2--AGBL1	2	23	CHD2	12938	chr15:93472321:+	AGBL1	65333	chr15:86790902:+	ONLY_REF_SPLICE	YES	84	0	0.23	1	0.0258	0.2962	{Klijn_CCL:Lung=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,AGBL1->ATP/GTP_binding_protein-like_1,chr15:86685227-87572283:+	CORL279_LUNG	0.23	1	0.322	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	MT-ND4--MT-ND4L	5	8	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	46	0	0.22	1	0.0644	0.103	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL279_LUNG	0.22	1	0.1674	FALSE	344	827	44	306	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND4--MT-ND4L	5	8	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	697	0	0.02	1	0.0644	0.103	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL279_LUNG	0.02	1	0.1674	FALSE	344	827	44	306	0	FALSE	ACH-000257
CORL279_LUNG	LINC01014--KCNMB2	6	2	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	1	154	0.89	0.05	0.0773	0.0258	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	CORL279_LUNG	0.05	0.89	0.1031	FALSE	11	60	26	37	0	FALSE	ACH-000257
CORL279_LUNG	WIPF2--RAPGEFL1	5	6	WIPF2	1214	chr17:38375769:+	RAPGEFL1	22638	chr17:38337868:+	ONLY_REF_SPLICE	YES	19	48	0.37	0.19	0.0644	0.0773	LOCAL_REARRANGEMENT:+:[23648],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	CORL279_LUNG	0.19	0.37	0.1417	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	BNIP3--MARCH6	1	21	BNIP3	1171	chr10:133795265:-	MARCH6	36374	chr5:10426502:+	ONLY_REF_SPLICE	YES	869	1301	0.02	0.02	0.0129	0.2704	{Klijn_CCL:Lung=1},BNIP3->BCL2/adenovirus_E1B_19kDa_interacting_protein_3,Oncogene{Bushman},chr10:133781578-133795435:-,MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6	CORL279_LUNG	0.02	0.02	0.2833	TRUE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	WDR59--GINS3	4	8	WDR59	6054	chr16:74999671:-	GINS3	46010	chr16:58426134:+	ONLY_REF_SPLICE	YES	15	18	0.44	0.4	0.0515	0.103	WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	CORL279_LUNG	0.4	0.44	0.1545	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	GSK3B--CEP70	4	6	GSK3B	2071	chr3:119812194:-	CEP70	26668	chr3:138291826:-	ONLY_REF_SPLICE	YES	237	136	0.04	0.07	0.0515	0.0773	GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,CEP70->centrosomal_protein_70,chr3:138213186-138313380:-	CORL279_LUNG	0.04	0.07	0.1288	TRUE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	RP11-123O10.4--GRIP1	3	10	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	50	1	0.21	0.0386	0.1288	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CORL279_LUNG	0.21	1	0.1674	FALSE	93	270	15	244	0	FALSE	ACH-000257
CORL279_LUNG	CHD2--AGBL1	2	12	CHD2	11876	chr15:93470560:+	AGBL1	64295	chr15:86768145:+	ONLY_REF_SPLICE	YES	55	0	0.2	1	0.0258	0.1545	{Klijn_CCL:Lung=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,AGBL1->ATP/GTP_binding_protein-like_1,chr15:86685227-87572283:+	CORL279_LUNG	0.2	1	0.1803	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	MT-ND3--MT-TG	5	0	MT-ND3	1063	chrM:10121:+	MT-TG	4390	chrM:10034:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0644	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	CORL279_LUNG	1	1	0.0644	FALSE	97	9	0	14	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND4--MT-ND4L	3	8	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	19	0	0.37	1	0.0386	0.103	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL279_LUNG	0.37	1	0.1416	FALSE	344	826	44	306	0	FALSE	ACH-000257
CORL279_LUNG	CDH11--GOT2	4	3	CDH11	4448	chr16:65155783:-	GOT2	34840	chr16:58757806:-	ONLY_REF_SPLICE	YES	0	975	1	0.01	0.0515	0.0386	CDH11->Oncogene{Bushman},cadherin_11,chr16:64977656-65160015:-,GOT2->chr16:58741035-58768261:-,glutamic-oxaloacetic_transaminase_2	CORL279_LUNG	0.01	1	0.0901	FALSE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	CASC11--TMEM65	1	14	CASC11	1143	chr8:128746071:-	TMEM65	18631	chr8:125335616:-	ONLY_REF_SPLICE	YES	10	211	0.6	0.07	0.0129	0.1803	CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-,TMEM65->chr8:125324231-125384933:-,transmembrane_protein_65	CORL279_LUNG	0.07	0.6	0.1932	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	MT-ND3--MT-CO3	4	2	MT-ND3	1078	chrM:10136:+	MT-CO3	4979	chrM:9839:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0515	0.0258	LOCAL_REARRANGEMENT:+:[69],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CORL279_LUNG	1	1	0.0773	FALSE	2	2	0	11	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND6--MT-TE	4	1	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.0515	0.0129	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL279_LUNG	0.71	1	0.0644	FALSE	499	1288	110	792	0	FALSE	ACH-000257
CORL279_LUNG	MT-TA--MT-TC	4	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0515	0.0129	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL279_LUNG	1	1	0.0644	FALSE	462	80	0	856	0	FALSE	ACH-000257
CORL279_LUNG	MT-TA--MT-TC	4	1	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0515	0.0129	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL279_LUNG	1	1	0.0644	FALSE	462	80	0	856	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0515	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL279_LUNG	1	1	0.0515	FALSE	499	1288	110	792	0	FALSE	ACH-000257
CORL279_LUNG	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0515	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CORL279_LUNG	1	1	0.0515	FALSE	292	1546	117	613	0	FALSE	ACH-000257
CORL279_LUNG	GSK3B--CEP70	3	2	GSK3B	2071	chr3:119812194:-	CEP70	29833	chr3:138256189:-	ONLY_REF_SPLICE	YES	237	104	0.02	0.05	0.0386	0.0258	GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,CEP70->centrosomal_protein_70,chr3:138213186-138313380:-	CORL279_LUNG	0.02	0.05	0.0644	TRUE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	PCDH15--RP11-168O22.1	3	2	PCDH15	1318	chr10:57387385:-	RP11-168O22.1	68273	chr10:57335471:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0.0258	GTEx_FI:{Adrenal_Gland=[count:35=pct:41.2],Pituitary=[count:2=pct:3.8],Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3]},PCDH15->chr10:55562531-57387702:-,protocadherin-related_15,RP11-168O22.1->chr10:57007515-57356993:-	CORL279_LUNG	1	1	0.0644	TRUE	32	58	0	7	0	FALSE	ACH-000257
CORL279_LUNG	WIPF2--RAPGEFL1	2	6	WIPF2	1189	chr17:38375744:+	RAPGEFL1	22321	chr17:38337551:+	ONLY_REF_SPLICE	YES	12	25	0.4	0.24	0.0258	0.0773	LOCAL_REARRANGEMENT:+:[23648],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	CORL279_LUNG	0.24	0.4	0.1031	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	MT-ND6--MT-TE	3	1	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0386	0.0129	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL279_LUNG	0.67	1	0.0515	FALSE	499	1288	110	792	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND6--MT-TE	3	1	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0386	0.0129	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL279_LUNG	0.67	1	0.0515	FALSE	499	1288	110	792	0	FALSE	ACH-000257
CORL279_LUNG	WDR59--GINS3	3	1	WDR59	6054	chr16:74999671:-	GINS3	49727	chr16:58437002:+	ONLY_REF_SPLICE	YES	15	179	0.21	0.02	0.0386	0.0129	WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	CORL279_LUNG	0.02	0.21	0.0515	TRUE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL279_LUNG	1	1	0.0386	FALSE	499	1288	110	792	0	FALSE	ACH-000257
CORL279_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL279_LUNG	1	1	0.0386	FALSE	499	1288	110	792	0	FALSE	ACH-000257
CORL279_LUNG	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CORL279_LUNG	1	1	0.0386	TRUE	22	156	2	142	0	FALSE	ACH-000257
CORL279_LUNG	RP1-34H18.1--NAV3	2	3	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0258	0.0386	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	CORL279_LUNG	0.83	1	0.0644	TRUE	254	575	65	124	0	FALSE	ACH-000257
CORL279_LUNG	RP11-120D5.1--MID1	2	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	14	0.83	0.26	0.0258	0.0386	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL279_LUNG	0.26	0.83	0.0644	FALSE	16	356	14	466	0	FALSE	ACH-000257
CORL279_LUNG	WIPF2--RAPGEFL1	1	6	WIPF2	1617	chr17:38376172:+	RAPGEFL1	22638	chr17:38337868:+	ONLY_REF_SPLICE	YES	19	48	0.27	0.13	0.0129	0.0773	LOCAL_REARRANGEMENT:+:[23648],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	CORL279_LUNG	0.13	0.27	0.0902	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	WIPF2--RAPGEFL1	1	6	WIPF2	1189	chr17:38375744:+	RAPGEFL1	21141	chr17:38334514:+	ONLY_REF_SPLICE	YES	12	18	0.37	0.28	0.0129	0.0773	LOCAL_REARRANGEMENT:+:[23648],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	CORL279_LUNG	0.28	0.37	0.0902	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	GSK3B--CEP70	1	5	GSK3B	2071	chr3:119812194:-	CEP70	26720	chr3:138291774:-	ONLY_REF_SPLICE	YES	237	115	0.02	0.05	0.0129	0.0644	GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,CEP70->centrosomal_protein_70,chr3:138213186-138313380:-	CORL279_LUNG	0.02	0.05	0.0773	TRUE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	GSK3B--CEP70	1	5	GSK3B	2071	chr3:119812194:-	CEP70	27794	chr3:138290198:-	ONLY_REF_SPLICE	NO	237	111	0.02	0.05	0.0129	0.0644	GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,CEP70->centrosomal_protein_70,chr3:138213186-138313380:-	CORL279_LUNG	0.02	0.05	0.0773	TRUE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	MARCH6--RP11-273B19.2	2	1	MARCH6	14229	chr5:10402719:+	RP11-273B19.2	41053	chr4:55702582:-	ONLY_REF_SPLICE	NO	859	0	0	1	0.0258	0.0129	MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6,RP11-273B19.2->chr4:55702327-55711568:-	CORL279_LUNG	0	1	0.0387	FALSE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	P4HA1--TTC18	2	1	P4HA1	6777	chr10:74828604:-	TTC18	31417	chr10:75091034:-	ONLY_REF_SPLICE	YES	231	2	0.01	0.6	0.0258	0.0129	P4HA1->chr10:74766975-74856732:-,prolyl_4-hydroxylase_subunit_alpha_1,TTC18->chr10:75013517-75118617:-	CORL279_LUNG	0.01	0.6	0.0387	FALSE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	PRR16--CTD-2334D19.1	2	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	27	0	0.1	1	0.0258	0.0129	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CORL279_LUNG	0.1	1	0.0387	FALSE	56	216	12	147	0	FALSE	ACH-000257
CORL279_LUNG	RP11-120D5.1--MID1	1	5	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	14	0.86	0.3	0.0129	0.0644	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL279_LUNG	0.3	0.86	0.0773	FALSE	2	31	0	60	0	FALSE	ACH-000257
CORL279_LUNG	CDKAL1--DCDC2	2	0	CDKAL1	10857	chr6:20955816:+	DCDC2	31336	chr6:24178860:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+,DCDC2->chr6:24171984-24358280:-,doublecortin_domain_containing_2	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	CERKL--GNAS	2	0	CERKL	1236	chr2:182545157:-	GNAS	37070	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CERKL->ceramide_kinase_like,chr2:182401403-182545392:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	CRNDE--FTO	2	0	CRNDE	1420	chr16:54962682:-	FTO	24199	chr16:53967897:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CRNDE->chr16:54952775-54963101:-,colorectal_neoplasia_differentially_expressed_(non-protein_coding),FTO->chr16:53737875-54155853:+,fat_mass_and_obesity_associated	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	EXO1--RINT1	2	0	EXO1	10366	chr1:242024006:+	RINT1	31682	chr7:105189001:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	EXO1->chr1:242011269-242058450:+,exonuclease_1,RINT1->RAD50_interactor_1,chr7:105172532-105208124:+	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	MGAT4C--IQCB1	2	0	MGAT4C	8846	chr12:86650017:-	IQCB1	38366	chr3:121500721:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	MGAT4C->MGAT4_family_member_C,chr12:86372516-87232681:-,IQCB1->IQ_motif_containing_B1,chr3:121488610-121553926:-	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	MRPL2--GTF2I	2	0	MRPL2	4785	chr6:43023635:-	GTF2I	47564	chr7:74173110:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	MRPL2->chr6:43021767-43027544:-,mitochondrial_ribosomal_protein_L2,GTF2I->chr7:74071994-74175026:+,general_transcription_factor_IIi	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	MTHFD1--EIF3C	2	0	MTHFD1	1438	chr14:64855186:+	EIF3C	43580	chr16:28734485:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	MTHFD1->chr14:64854749-64926722:+,methylenetetrahydrofolate_dehydrogenase,_cyclohydrolase_and_formyltetrahydrofolate_synthetase_1,EIF3C->Oncogene{Bushman},chr16:28699879-28747051:+,eukaryotic_translation_initiation_factor_3_subunit_C	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CORL279_LUNG	1	1	0.0258	FALSE	25	145	6	90	0	FALSE	ACH-000257
CORL279_LUNG	RGS12--PGM3	2	0	RGS12	8553	chr4:3344780:+	PGM3	41069	chr6:83896794:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	RGS12->chr4:3294755-3441640:+,regulator_of_G-protein_signaling_12,PGM3->chr6:83870869-83903655:-,phosphoglucomutase_3	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	RP11-1094M14.11--MTCH2	2	0	RP11-1094M14.11	1382	chr17:33895520:+	MTCH2	8897	chr11:47657123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	RP11-1094M14.11->chr17:33895139-33901811:+,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	RP5-864K19.4--SMC4	2	0	RP5-864K19.4	1240	chr1:39325911:+	SMC4	17694	chr3:160132155:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	RP5-864K19.4->chr1:39325672-39385068:+,SMC4->chr3:160117062-160152750:+,structural_maintenance_of_chromosomes_4	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	ST18--PCMTD1	2	0	ST18	11031	chr8:53166810:-	PCMTD1	53249	chr8:52773806:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	ST18->chr8:53023399-53373519:-,suppression_of_tumorigenicity_18,_zinc_finger,PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	STX18-AS1--MAPKAPK5	2	0	STX18-AS1	2665	chr4:4546634:+	MAPKAPK5	31400	chr12:112326292:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MAPKAPK5->chr12:112279782-112334343:+,mitogen-activated_protein_kinase-activated_protein_kinase_5	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	TOX--CA8	2	0	TOX	1323	chr8:60031445:-	CA8	26715	chr8:61102544:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	TOX->chr8:59717977-60031767:-,thymocyte_selection_associated_high_mobility_group_box,CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	WIPF2--RAPGEFL1	2	0	WIPF2	1189	chr17:38375744:+	RAPGEFL1	25510	chr17:38345118:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	LOCAL_REARRANGEMENT:+:[23648],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	CORL279_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000257
CORL279_LUNG	XRCC5--RPL37A	2	0	XRCC5	2602	chr2:216974180:+	RPL37A	31413	chr2:217363993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	CORL279_LUNG	1	1	0.0258	TRUE	1	1	0	8	1	TRUE	ACH-000257
CORL279_LUNG	LINC01014--KCNMB2	1	2	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	NO	1	134	0.75	0.02	0.0129	0.0258	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	CORL279_LUNG	0.02	0.75	0.0387	FALSE	12	33	18	33	0	FALSE	ACH-000257
CORL279_LUNG	MYC--FAM91A1	1	2	MYC	3962	chr8:128751265:+	FAM91A1	10315	chr8:124786320:+	ONLY_REF_SPLICE	NO	1804	433	0	0.01	0.0129	0.0258	MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog,FAM91A1->chr8:124780696-124827692:+,family_with_sequence_similarity_91_member_A1	CORL279_LUNG	0	0.01	0.0387	FALSE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	NRIP1--AF127936.7	1	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0129	0.0258	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CORL279_LUNG	0.25	1	0.0387	FALSE	125	705	46	456	0	FALSE	ACH-000257
CORL279_LUNG	P4HA1--TTC18	1	2	P4HA1	6777	chr10:74828604:-	TTC18	30322	chr10:75095282:-	ONLY_REF_SPLICE	NO	231	0	0.01	1	0.0129	0.0258	P4HA1->chr10:74766975-74856732:-,prolyl_4-hydroxylase_subunit_alpha_1,TTC18->chr10:75013517-75118617:-	CORL279_LUNG	0.01	1	0.0387	FALSE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	PCDH15--RP11-168O22.1	1	2	PCDH15	1318	chr10:57387385:-	RP11-168O22.1	69335	chr10:57125973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0.0258	GTEx_FI:{Adrenal_Gland=[count:35=pct:41.2],Pituitary=[count:2=pct:3.8],Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3]},PCDH15->chr10:55562531-57387702:-,protocadherin-related_15,RP11-168O22.1->chr10:57007515-57356993:-	CORL279_LUNG	1	1	0.0387	TRUE	13	14	0	3	0	FALSE	ACH-000257
CORL279_LUNG	PCDH15--RP11-168O22.1	1	2	PCDH15	1318	chr10:57387385:-	RP11-168O22.1	70457	chr10:57007648:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0.0258	GTEx_FI:{Adrenal_Gland=[count:35=pct:41.2],Pituitary=[count:2=pct:3.8],Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3]},PCDH15->chr10:55562531-57387702:-,protocadherin-related_15,RP11-168O22.1->chr10:57007515-57356993:-	CORL279_LUNG	1	1	0.0387	TRUE	24	53	0	5	0	FALSE	ACH-000257
CORL279_LUNG	VWDE--PHF14	1	2	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	33	74	0.08	0.04	0.0129	0.0258	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	CORL279_LUNG	0.04	0.08	0.0387	TRUE	0	6	0	17	2	TRUE	ACH-000257
CORL279_LUNG	ANKH--TRIO	1	1	ANKH	13294	chr5:14741936:-	TRIO	33284	chr5:14290825:+	ONLY_REF_SPLICE	NO	608	430	0	0	0.0129	0.0129	ANKH->ANKH_inorganic_pyrophosphate_transport_regulator,chr5:14704910-14871887:-,TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor	CORL279_LUNG	0	0	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	CHCHD3--EXOC4	1	1	CHCHD3	10629	chr7:132570422:-	EXOC4	23855	chr7:132973676:+	ONLY_REF_SPLICE	YES	143	137	0.01	0.01	0.0129	0.0129	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	CORL279_LUNG	0.01	0.01	0.0258	FALSE	0	0	0	2	0	FALSE	ACH-000257
CORL279_LUNG	CHCHD3--EXOC4	1	1	CHCHD3	2325	chr7:132754902:-	EXOC4	45019	chr7:133502078:+	ONLY_REF_SPLICE	YES	234	112	0.01	0.02	0.0129	0.0129	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	CORL279_LUNG	0.01	0.02	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	CHCHD3--EXOC4	1	1	CHCHD3	2325	chr7:132754902:-	EXOC4	27342	chr7:133041084:+	ONLY_REF_SPLICE	NO	234	124	0.01	0.02	0.0129	0.0129	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	CORL279_LUNG	0.01	0.02	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	DLK1--CPSF6	1	1	DLK1	6692	chr14:101200765:+	CPSF6	21513	chr12:69663292:+	ONLY_REF_SPLICE	YES	2829	229	0	0.01	0.0129	0.0129	DLK1->chr14:101192042-101201539:+,delta-like_1_homolog_(Drosophila),CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6	CORL279_LUNG	0	0.01	0.0258	FALSE	0	1	0	2	0	FALSE	ACH-000257
CORL279_LUNG	DPYD--MIR137HG	1	1	DPYD	2277	chr1:98348820:-	MIR137HG	40342	chr1:98460556:-	ONLY_REF_SPLICE	YES	399	1	0	0.67	0.0129	0.0129	LOCAL_REARRANGEMENT:-:[66951],DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,MIR137HG->MIR137_host_gene,chr1:98453556-98515419:-	CORL279_LUNG	0	0.67	0.0258	FALSE	0	1	0	2	1	FALSE	ACH-000257
CORL279_LUNG	DPYD--MIR137HG	1	1	DPYD	4686	chr1:98293670:-	MIR137HG	41427	chr1:98455125:-	ONLY_REF_SPLICE	YES	278	2	0.01	0.5	0.0129	0.0129	LOCAL_REARRANGEMENT:-:[66951],DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,MIR137HG->MIR137_host_gene,chr1:98453556-98515419:-	CORL279_LUNG	0.01	0.5	0.0258	FALSE	0	0	0	2	0	FALSE	ACH-000257
CORL279_LUNG	EMB--OSBPL1A	1	1	EMB	4209	chr5:49723978:-	OSBPL1A	27650	chr18:21914294:-	ONLY_REF_SPLICE	YES	123	23	0.02	0.08	0.0129	0.0129	EMB->chr5:49692026-49739082:-,embigin,OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A	CORL279_LUNG	0.02	0.08	0.0258	TRUE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	FAM91A1--FER1L6	1	1	FAM91A1	20311	chr8:124822591:+	FER1L6	39724	chr8:124998308:+	ONLY_REF_SPLICE	YES	2149	1	0	0.67	0.0129	0.0129	NEIGHBORS[36535],FAM91A1->chr8:124780696-124827692:+,family_with_sequence_similarity_91_member_A1,FER1L6->chr8:124864227-125132302:+,fer-1_like_family_member_6	CORL279_LUNG	0	0.67	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	MYC--FAM91A1	1	1	MYC	2190	chr8:128748869:+	FAM91A1	10315	chr8:124786320:+	ONLY_REF_SPLICE	YES	1694	433	0	0	0.0129	0.0129	MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog,FAM91A1->chr8:124780696-124827692:+,family_with_sequence_similarity_91_member_A1	CORL279_LUNG	0	0	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	NDUFA6--PLOD3	1	1	NDUFA6	1350	chr22:42486610:-	PLOD3	11845	chr7:100856485:-	ONLY_REF_SPLICE	YES	517	117	0	0.02	0.0129	0.0129	NDUFA6->NADH:ubiquinone_oxidoreductase_subunit_A6,chr22:42481529-42486959:-,PLOD3->chr7:100849258-100861701:-,procollagen-lysine,2-oxoglutarate_5-dioxygenase_3	CORL279_LUNG	0	0.02	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	PRR16--CTD-2334D19.1	1	1	PRR16	6887	chr5:119954260:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	31	0	0.06	1	0.0129	0.0129	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CORL279_LUNG	0.06	1	0.0258	FALSE	0	2	0	14	0	FALSE	ACH-000257
CORL279_LUNG	REV3L--FYN	1	1	REV3L	1966	chr6:111803953:-	FYN	78912	chr6:111995833:-	ONLY_REF_SPLICE	YES	37	601	0.05	0	0.0129	0.0129	GTEx_FI:{Skin=[count:2=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Cells_-_Transformed_fibroblasts=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-	CORL279_LUNG	0	0.05	0.0258	FALSE	2	6	0	2	0	FALSE	ACH-000257
CORL279_LUNG	REV3L--FYN	1	1	REV3L	1966	chr6:111803953:-	FYN	65781	chr6:112041265:-	ONLY_REF_SPLICE	NO	37	254	0.05	0.01	0.0129	0.0129	GTEx_FI:{Skin=[count:2=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Cells_-_Transformed_fibroblasts=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-	CORL279_LUNG	0.01	0.05	0.0258	FALSE	1	3	0	1	2	FALSE	ACH-000257
CORL279_LUNG	RP1-34H18.1--RP11-781A6.1	1	1	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0.0129	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	CORL279_LUNG	1	1	0.0258	TRUE	94	160	11	37	0	FALSE	ACH-000257
CORL279_LUNG	RP11-357C3.3--ARHGEF9	1	1	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	27535	chrX:62898452:-	ONLY_REF_SPLICE	YES	58	202	0.03	0.01	0.0129	0.0129	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	CORL279_LUNG	0.01	0.03	0.0258	FALSE	0	2	0	6	0	FALSE	ACH-000257
CORL279_LUNG	SF1--GNAS	1	1	SF1	3289	chr11:64543970:-	GNAS	32063	chr20:57470667:+	ONLY_REF_SPLICE	NO	380	1732	0.01	0	0.0129	0.0129	GTEx_FI:{Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=3,Pituitary=3,Minor_Salivary_Gland=1,Brain_-_Hypothalamus=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	CORL279_LUNG	0	0.01	0.0258	FALSE	4	13	1	15	0	FALSE	ACH-000257
CORL279_LUNG	SLC25A13--SHFM1	1	1	SLC25A13	9092	chr7:95820421:-	SHFM1	29567	chr7:96324203:-	ONLY_REF_SPLICE	YES	119	963	0.02	0	0.0129	0.0129	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Spleen=1},SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	CORL279_LUNG	0	0.02	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	SYN3--MYC	1	1	SYN3	7698	chr22:33327375:-	MYC	30497	chr8:128750494:+	ONLY_REF_SPLICE	YES	54	1780	0.04	0	0.0129	0.0129	SYN3->chr22:32908539-33454358:-,synapsin_III,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CORL279_LUNG	0	0.04	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	TCF4--TXNL1	1	1	TCF4	11275	chr18:53252511:-	TXNL1	62278	chr18:54293688:-	ONLY_REF_SPLICE	NO	53	220	0.04	0.01	0.0129	0.0129	TCF4->chr18:52889562-53332018:-,transcription_factor_4,TXNL1->chr18:54264439-54318831:-,thioredoxin_like_1	CORL279_LUNG	0.01	0.04	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000257
CORL279_LUNG	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0.0129	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CORL279_LUNG	1	1	0.0258	TRUE	62	24	1	171	0	FALSE	ACH-000257
CORL279_LUNG	VWDE--ETV1	1	1	VWDE	1283	chr7:12443285:-	ETV1	45446	chr7:13978871:-	ONLY_REF_SPLICE	YES	33	750	0.06	0	0.0129	0.0129	VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,ETV1->ArcherDX_panel,ETS_variant_1,FoundationOne_panel,Oncogene{Bushman},chr7:13930853-14031050:-	CORL279_LUNG	0	0.06	0.0258	FALSE	0	1	0	1	1	FALSE	ACH-000257
CORL279_LUNG	WDR59--GINS3	1	1	WDR59	6054	chr16:74999671:-	GINS3	51128	chr16:58438403:+	ONLY_REF_SPLICE	NO	15	163	0.12	0.01	0.0129	0.0129	WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	CORL279_LUNG	0.01	0.12	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000257
HMEL_BREAST	MT-ND4--MT-ND4L	2794	18	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	225	0	0.93	1	33.6006	0.2165	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HMEL_BREAST	0.93	1	33.8171	FALSE	344	827	44	306	0	FALSE	ACH-000642
HMEL_BREAST	MT-TA--MT-TN	92	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1064	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMEL_BREAST	1	1	1.1064	FALSE	369	2501	205	193	0	FALSE	ACH-000642
HMEL_BREAST	TIMM23B--LINC00843	70	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.97	0.8418	0.2766	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HMEL_BREAST	0.97	1	1.1184	TRUE	508	994	45	981	0	FALSE	ACH-000642
HMEL_BREAST	MT-TA--MT-TC	54	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6494	0.0842	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HMEL_BREAST	1	1	0.7336	FALSE	462	80	0	856	0	FALSE	ACH-000642
HMEL_BREAST	TIMM23--RP11-464F9.1	47	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	159	4	0.24	0.92	0.5652	0.0241	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HMEL_BREAST	0.24	0.92	0.5893	TRUE	519	3926	326	965	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND4--MT-ND4L	10	115	MT-ND4	1741	chrM:11500:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	9947	0	0.01	1	0.1203	1.383	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HMEL_BREAST	0.01	1	1.5033	FALSE	344	827	44	306	0	FALSE	ACH-000642
HMEL_BREAST	RP11-479O16.1--MSMO1	38	1	RP11-479O16.1	5346	chr5:58037747:-	MSMO1	15454	chr4:166263475:+	INCL_NON_REF_SPLICE	YES	0	1351	1	0.03	0.457	0.012	RP11-479O16.1->chr5:58037408-58112926:-,MSMO1->chr4:166248775-166264312:+,methylsterol_monooxygenase_1	HMEL_BREAST	0.03	1	0.469	TRUE	0	0	0	5	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND4--MT-ND4L	3	127	MT-ND4	2281	chrM:12040:+	MT-ND4L	5383	chrM:10474:+	INCL_NON_REF_SPLICE	YES	151	0	0.46	1	0.0361	1.5273	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HMEL_BREAST	0.46	1	1.5634	FALSE	284	710	36	297	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND4--MT-ND4L	3	124	MT-ND4	2305	chrM:12064:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	5	0	0.96	1	0.0361	1.4912	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HMEL_BREAST	0.96	1	1.5273	FALSE	268	700	35	284	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND4--MT-ND4L	3	108	MT-ND4	1112	chrM:10871:+	MT-ND4L	5464	chrM:10555:+	INCL_NON_REF_SPLICE	YES	24	0	0.82	1	0.0361	1.2988	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HMEL_BREAST	0.82	1	1.3349	FALSE	344	826	44	306	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND4--MT-ND4L	6	77	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	12535	0	0.01	1	0.0722	0.926	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HMEL_BREAST	0.01	1	0.9982	FALSE	344	827	44	306	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND4--MT-ND4L	3	84	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	11	0	0.89	1	0.0361	1.0102	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HMEL_BREAST	0.89	1	1.0463	FALSE	344	821	44	306	0	FALSE	ACH-000642
HMEL_BREAST	MT-TA--MT-TN	12	43	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.1443	0.5171	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMEL_BREAST	1	1	0.6614	FALSE	369	2501	205	193	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND4--MT-ND4L	11	24	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	17824	0	0	1	0.1323	0.2886	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HMEL_BREAST	0	1	0.4209	FALSE	328	800	43	304	0	FALSE	ACH-000642
HMEL_BREAST	MT-TA--MT-TN	7	39	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0.469	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMEL_BREAST	1	1	0.5532	FALSE	369	2501	205	193	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND6--MT-TE	16	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1924	0.012	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMEL_BREAST	1	1	0.2044	FALSE	499	1288	110	792	0	FALSE	ACH-000642
HMEL_BREAST	SLC1A5--MT-ND4L	15	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1804	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HMEL_BREAST	1	1	0.1804	FALSE	0	0	0	189	0	FALSE	ACH-000642
HMEL_BREAST	MT-TA--MT-TN	7	30	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0.3608	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMEL_BREAST	1	1	0.445	FALSE	369	2501	205	193	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND4--MT-ND4L	7	19	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	2343	0	0.01	1	0.0842	0.2285	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HMEL_BREAST	0.01	1	0.3127	FALSE	344	827	44	306	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND4--MT-ND4L	9	10	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	100	0	0.16	1	0.1082	0.1203	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HMEL_BREAST	0.16	1	0.2285	FALSE	344	826	44	306	0	FALSE	ACH-000642
HMEL_BREAST	MT-TA--MT-TN	4	29	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0.3488	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMEL_BREAST	1	1	0.3969	FALSE	369	2501	205	193	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND4--MT-ND4L	6	20	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	17452	0	0	1	0.0722	0.2405	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HMEL_BREAST	0	1	0.3127	FALSE	344	827	44	306	0	FALSE	ACH-000642
HMEL_BREAST	RP11-123O10.4--GRIP1	9	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1082	0.0722	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HMEL_BREAST	1	1	0.1804	FALSE	416	2512	207	587	0	FALSE	ACH-000642
HMEL_BREAST	ALDOA--KRT17	10	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1203	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	HMEL_BREAST	1	1	0.1203	TRUE	0	0	0	10	0	TRUE	ACH-000642
HMEL_BREAST	MT-ND6--MT-TE	9	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1082	0.0481	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMEL_BREAST	0.93	1	0.1563	FALSE	499	1288	110	792	0	FALSE	ACH-000642
HMEL_BREAST	MT-TA--MT-TN	10	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1203	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMEL_BREAST	1	1	0.1203	FALSE	369	2501	205	193	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND6--MT-TE	6	14	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0.1684	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMEL_BREAST	1	1	0.2406	FALSE	499	1288	110	792	0	FALSE	ACH-000642
HMEL_BREAST	MT-TA--MT-TC	8	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0962	0.0722	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HMEL_BREAST	1	1	0.1684	FALSE	462	80	0	856	0	FALSE	ACH-000642
HMEL_BREAST	MT-TA--MT-TN	5	16	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0601	0.1924	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMEL_BREAST	1	1	0.2525	FALSE	369	2501	205	193	0	FALSE	ACH-000642
HMEL_BREAST	RP11-680G10.1--GSE1	8	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.67	0.0962	0.0481	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HMEL_BREAST	0.67	1	0.1443	TRUE	458	1351	185	561	0	FALSE	ACH-000642
HMEL_BREAST	RP11-680G10.1--GSE1	8	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	12	1	0.45	0.0962	0.0241	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HMEL_BREAST	0.45	1	0.1203	TRUE	465	1949	224	605	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND6--MT-TE	8	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0962	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMEL_BREAST	1	1	0.0962	FALSE	499	1288	110	792	0	FALSE	ACH-000642
HMEL_BREAST	MT-TA--MT-TN	6	7	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0722	0.0842	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMEL_BREAST	1	1	0.1564	FALSE	369	2501	205	193	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND6--MT-TE	6	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0.0601	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMEL_BREAST	1	1	0.1323	FALSE	499	1288	110	792	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND6--MT-TE	7	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0.012	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMEL_BREAST	1	1	0.0962	FALSE	499	1288	110	792	0	FALSE	ACH-000642
HMEL_BREAST	DUSP6--KRT14	7	0	DUSP6	2249	chr12:89745800:-	KRT14	10041	chr17:39743147:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0	DUSP6->chr12:89741009-89747048:-,dual_specificity_phosphatase_6,KRT14->chr17:39738531-39743173:-,keratin_14	HMEL_BREAST	1	1	0.0842	TRUE	0	0	0	1	0	TRUE	ACH-000642
HMEL_BREAST	APP--MT-ND2	6	2	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	5100	7088	0	0	0.0722	0.0241	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HMEL_BREAST	0	0	0.0963	FALSE	0	1	0	51	0	FALSE	ACH-000642
HMEL_BREAST	RPSAP52--HMGA2	6	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	17	688	0.29	0.01	0.0722	0.012	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HMEL_BREAST	0.01	0.29	0.0842	FALSE	0	59	0	125	0	FALSE	ACH-000642
HMEL_BREAST	ALDOA--KRT17	6	0	ALDOA	7476	chr16:30077248:+	KRT17	15303	chr17:39780798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	HMEL_BREAST	1	1	0.0722	TRUE	0	0	0	10	0	TRUE	ACH-000642
HMEL_BREAST	MT-TA--MT-TN	6	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMEL_BREAST	1	1	0.0722	FALSE	369	2501	205	193	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND4--MT-ND4L	3	10	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1618	0	0.01	1	0.0361	0.1203	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HMEL_BREAST	0.01	1	0.1564	FALSE	344	827	44	306	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND4--MT-ND4L	5	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0601	0.012	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HMEL_BREAST	1	1	0.0721	FALSE	344	821	44	306	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND6--MT-TE	3	7	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.77	1	0.0361	0.0842	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMEL_BREAST	0.77	1	0.1203	FALSE	499	1288	110	792	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND4--MT-ND4L	3	5	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	18	0	0.31	1	0.0361	0.0601	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HMEL_BREAST	0.31	1	0.0962	FALSE	344	826	44	306	0	FALSE	ACH-000642
HMEL_BREAST	SLC1A5--MT-ND4L	4	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1397	0	0	1	0.0481	0.012	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HMEL_BREAST	0	1	0.0601	FALSE	0	0	0	189	0	FALSE	ACH-000642
HMEL_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMEL_BREAST	1	1	0.0481	FALSE	499	1288	110	792	0	FALSE	ACH-000642
HMEL_BREAST	PABPC1--KRT14	4	0	PABPC1	2002	chr8:101734036:-	KRT14	18384	chr17:39743147:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	GTEx&tcga_normals:1/3694=0.03%,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,KRT14->chr17:39738531-39743173:-,keratin_14	HMEL_BREAST	1	1	0.0481	TRUE	0	0	0	4	0	TRUE	ACH-000642
HMEL_BREAST	MT-CO3--MT-ATP6	3	3	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0.0361	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HMEL_BREAST	1	1	0.0722	FALSE	189	492	56	216	0	FALSE	ACH-000642
HMEL_BREAST	MT-CO3--MT-ATP6	3	3	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.4	0.0361	0.0361	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HMEL_BREAST	0.4	1	0.0722	FALSE	189	492	56	216	0	FALSE	ACH-000642
HMEL_BREAST	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0361	0.0241	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HMEL_BREAST	0.71	1	0.0602	FALSE	125	705	46	456	0	FALSE	ACH-000642
HMEL_BREAST	SAMD5--SASH1	3	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	2	4	0.67	0.5	0.0361	0.012	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HMEL_BREAST	0.5	0.67	0.0481	TRUE	53	396	64	110	0	FALSE	ACH-000642
HMEL_BREAST	IGFBP7--KRT17	3	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	HMEL_BREAST	1	1	0.0361	TRUE	0	0	0	9	0	TRUE	ACH-000642
HMEL_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMEL_BREAST	1	1	0.0361	FALSE	499	1288	110	792	0	FALSE	ACH-000642
HMEL_BREAST	PABPC1--KRT14	3	0	PABPC1	2018	chr8:101734020:-	KRT14	18429	chr17:39743102:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	GTEx&tcga_normals:1/3694=0.03%,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,KRT14->chr17:39738531-39743173:-,keratin_14	HMEL_BREAST	1	1	0.0361	TRUE	0	0	0	4	0	TRUE	ACH-000642
HMEL_BREAST	NRIP1--AF127936.7	2	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0.0241	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HMEL_BREAST	1	1	0.0482	FALSE	292	1546	117	613	0	FALSE	ACH-000642
HMEL_BREAST	CDH13--HSBP1	2	1	CDH13	23242	chr16:83636199:+	HSBP1	37137	chr16:83842285:+	ONLY_REF_SPLICE	YES	580	168	0.01	0.02	0.0241	0.012	NEIGHBORS[11244],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,HSBP1->chr16:83841448-83853342:+,heat_shock_factor_binding_protein_1	HMEL_BREAST	0.01	0.02	0.0361	FALSE	0	1	0	2	0	FALSE	ACH-000642
HMEL_BREAST	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0241	0.012	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HMEL_BREAST	0.75	1	0.0361	FALSE	515	4851	409	746	0	FALSE	ACH-000642
HMEL_BREAST	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0.012	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HMEL_BREAST	1	1	0.0361	TRUE	62	24	1	171	0	FALSE	ACH-000642
HMEL_BREAST	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HMEL_BREAST	1	1	0.0241	FALSE	16	356	14	466	0	FALSE	ACH-000642
HMEL_BREAST	RP11-440L14.1--CCNG2	2	0	RP11-440L14.1	1078	chr4:775560:-	CCNG2	9958	chr4:78079686:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	RP11-440L14.1->chr4:756175-775637:-,CCNG2->chr4:78078304-78354542:+,cyclin_G2	HMEL_BREAST	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000642
HMEL_BREAST	RPS25--PLXNB1	2	0	RPS25	1410	chr11:118888992:-	PLXNB1	20580	chr3:48454578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25,PLXNB1->Oncogene{Bushman},chr3:48445261-48471594:-,plexin_B1	HMEL_BREAST	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000642
HMEL_BREAST	SCAF4--PGBD2	2	0	SCAF4	16796	chr21:33057362:-	PGBD2	26865	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	HMEL_BREAST	1	1	0.0241	TRUE	1	0	0	1	0	TRUE	ACH-000642
HMEL_BREAST	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HMEL_BREAST	1	1	0.0241	FALSE	272	151	14	158	0	FALSE	ACH-000642
HMEL_BREAST	ANP32A--TPM1	1	1	ANP32A	1200	chr15:69113037:-	TPM1	25508	chr15:63349184:+	ONLY_REF_SPLICE	YES	409	469	0	0	0.012	0.012	ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	HMEL_BREAST	0	0	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000642
HMEL_BREAST	HYI--COL7A1	1	1	HYI	2785	chr1:43917876:-	COL7A1	15416	chr3:48624122:-	ONLY_REF_SPLICE	YES	99	848	0.02	0	0.012	0.012	HYI->chr1:43916824-43919660:-,hydroxypyruvate_isomerase_(putative),COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	HMEL_BREAST	0	0.02	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000642
HMEL_BREAST	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.012	0.012	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HMEL_BREAST	1	1	0.024	FALSE	192	492	57	212	0	FALSE	ACH-000642
HMEL_BREAST	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.012	0.012	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HMEL_BREAST	0.67	1	0.024	FALSE	407	2205	196	549	0	FALSE	ACH-000642
HMEL_BREAST	TMEM104--BANP	1	1	TMEM104	7995	chr17:72791771:+	BANP	47485	chr16:88110196:+	ONLY_REF_SPLICE	YES	49	28	0.04	0.07	0.012	0.012	TMEM104->Oncogene{Bushman},chr17:72772622-72835918:+,transmembrane_protein_104,BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+	HMEL_BREAST	0.04	0.07	0.024	TRUE	0	0	0	1	0	FALSE	ACH-000642
SNU478_BILIARY_TRACT	LOH12CR1--BCL2L14	771	255	LOH12CR1	2575	chr12:12514283:+	BCL2L14	20042	chr12:12240147:+	ONLY_REF_SPLICE	YES	275	176	0.79	0.85	9.0826	3.004	LOH12CR1->chr12:12510013-12619840:+,BCL2L14->BCL2_like_14,chr12:12202778-12364018:+	SNU478_BILIARY_TRACT	0.79	0.85	12.0866	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	LRP6--ETV6	274	82	LRP6	1332	chr12:12419615:-	ETV6	40841	chr12:11992074:+	ONLY_REF_SPLICE	YES	1006	11	0.26	0.97	3.2278	0.966	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+	SNU478_BILIARY_TRACT	0.26	0.97	4.1938	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	LRP6--CREBL2	243	59	LRP6	1332	chr12:12419615:-	CREBL2	37502	chr12:12788711:+	ONLY_REF_SPLICE	YES	1006	555	0.23	0.35	2.8626	0.695	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+	SNU478_BILIARY_TRACT	0.23	0.35	3.5576	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	TIMM23B--LINC00843	115	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3547	0.2709	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU478_BILIARY_TRACT	1	1	1.6256	TRUE	508	994	45	981	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	TOP3B--CYYR1	70	35	TOP3B	5404	chr22:22326984:-	CYYR1	25340	chr21:27852748:-	ONLY_REF_SPLICE	YES	86	0	0.55	1	0.8246	0.4123	TOP3B->chr22:22311397-22337213:-,topoisomerase_(DNA)_III_beta,CYYR1->chr21:27838528-27945603:-,cysteine_and_tyrosine_rich_1	SNU478_BILIARY_TRACT	0.55	1	1.2369	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	MAP2K3--PEMT	73	15	MAP2K3	1298	chr17:21188281:+	PEMT	22174	chr17:17480341:-	ONLY_REF_SPLICE	YES	43	54	0.67	0.62	0.86	0.1767	MAP2K3->chr17:21187984-21218552:+,mitogen-activated_protein_kinase_kinase_3,PEMT->chr17:17408877-17495022:-,phosphatidylethanolamine_N-methyltransferase	SNU478_BILIARY_TRACT	0.62	0.67	1.0367	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ATP8	66	7	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	11697	1443	0.01	0.05	0.7775	0.0825	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU478_BILIARY_TRACT	0.01	0.05	0.86	FALSE	231	217	16	283	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	TIMM23--RP11-464F9.1	64	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.7539	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU478_BILIARY_TRACT	1	1	0.7539	TRUE	519	3926	326	965	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ND4L	4	147	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	8	0	0.95	1	0.0471	1.7317	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU478_BILIARY_TRACT	0.95	1	1.7788	FALSE	344	826	44	306	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	LOH12CR1--BCL2L14	18	60	LOH12CR1	2575	chr12:12514283:+	BCL2L14	21216	chr12:12243713:+	ONLY_REF_SPLICE	YES	275	371	0.22	0.17	0.212	0.7068	LOH12CR1->chr12:12510013-12619840:+,BCL2L14->BCL2_like_14,chr12:12202778-12364018:+	SNU478_BILIARY_TRACT	0.17	0.22	0.9188	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	MT-TA--MT-TC	32	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.377	0.0353	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU478_BILIARY_TRACT	1	1	0.4123	FALSE	462	80	0	856	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ND4L	3	109	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.0353	1.2841	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU478_BILIARY_TRACT	0.97	1	1.3194	FALSE	344	826	44	306	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ND4L	3	108	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	1	0.98	0.99	0.0353	1.2723	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU478_BILIARY_TRACT	0.98	0.99	1.3076	FALSE	344	821	44	306	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	CIRBP--STK11	29	2	CIRBP	10200	chr19:1272050:+	STK11	20877	chr19:1218416:+	ONLY_REF_SPLICE	YES	129	0	0.19	1	0.3416	0.0236	LOCAL_REARRANGEMENT:+:[30956],CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	SNU478_BILIARY_TRACT	0.19	1	0.3652	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	LRP6--ETV6	7	83	LRP6	1332	chr12:12419615:-	ETV6	39686	chr12:11979336:+	ONLY_REF_SPLICE	YES	1006	12	0.08	0.88	0.0825	0.9778	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+	SNU478_BILIARY_TRACT	0.08	0.88	1.0603	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	ZNF654--HMGB2	26	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3063	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU478_BILIARY_TRACT	1	1	0.3063	TRUE	0	0	0	518	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	LRP6--ETV6	1	83	LRP6	1332	chr12:12419615:-	ETV6	38928	chr12:11978578:+	ONLY_REF_SPLICE	NO	1006	12	0.08	0.88	0.0118	0.9778	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+	SNU478_BILIARY_TRACT	0.08	0.88	0.9896	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ATP8	15	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11602	7	0	0.76	0.1767	0.0825	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU478_BILIARY_TRACT	0	0.76	0.2592	FALSE	231	217	16	283	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ND4L	9	28	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	9948	0	0	1	0.106	0.3298	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU478_BILIARY_TRACT	0	1	0.4358	FALSE	328	800	43	304	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	LOH12CR1--BCL2L14	1	57	LOH12CR1	1431	chr12:12510443:+	BCL2L14	20042	chr12:12240147:+	ONLY_REF_SPLICE	YES	452	176	0.11	0.25	0.0118	0.6715	LOH12CR1->chr12:12510013-12619840:+,BCL2L14->BCL2_like_14,chr12:12202778-12364018:+	SNU478_BILIARY_TRACT	0.11	0.25	0.6833	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ATP8	15	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1767	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU478_BILIARY_TRACT	1	1	0.1767	FALSE	230	198	14	283	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	HSP90AB1--MT-RNR2	14	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2895	0	0.01	1	0.1649	0.0118	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU478_BILIARY_TRACT	0.01	1	0.1767	FALSE	13	9	0	364	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	USMG5--RP11-886D15.1	13	4	USMG5	1058	chr10:105156166:-	RP11-886D15.1	9405	chr11:104443325:-	ONLY_REF_SPLICE	YES	4	0	0.81	1	0.1531	0.0471	USMG5->chr10:105148798-105156223:-,up-regulated_during_skeletal_muscle_growth_5_homolog_(mouse),RP11-886D15.1->chr11:104316596-104480049:-	SNU478_BILIARY_TRACT	0.81	1	0.2002	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	RP11-680G10.1--GSE1	11	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	18	1	0.44	0.1296	0.0353	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU478_BILIARY_TRACT	0.44	1	0.1649	TRUE	465	1949	224	605	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	HSP90AB1--MT-RNR2	10	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2912	0	0	1	0.1178	0.0118	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU478_BILIARY_TRACT	0	1	0.1296	FALSE	13	9	0	364	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	MT-TA--MT-TC	9	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.106	0.0589	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU478_BILIARY_TRACT	1	1	0.1649	FALSE	462	80	0	856	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	LOH12CR1--BCL2L14	1	32	LOH12CR1	2575	chr12:12514283:+	BCL2L14	22440	chr12:12247598:+	ONLY_REF_SPLICE	YES	275	400	0.11	0.08	0.0118	0.377	LOH12CR1->chr12:12510013-12619840:+,BCL2L14->BCL2_like_14,chr12:12202778-12364018:+	SNU478_BILIARY_TRACT	0.08	0.11	0.3888	TRUE	0	0	0	1	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	LRP6--ETV6	5	16	LRP6	1332	chr12:12419615:-	ETV6	43414	chr12:12006361:+	ONLY_REF_SPLICE	YES	1006	124	0.02	0.14	0.0589	0.1885	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+	SNU478_BILIARY_TRACT	0.02	0.14	0.2474	TRUE	0	0	0	1	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ATP8	7	7	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2152	30	0.01	0.32	0.0825	0.0825	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU478_BILIARY_TRACT	0.01	0.32	0.165	FALSE	216	209	16	281	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	USMG5--RP11-886D15.1	8	1	USMG5	1058	chr10:105156166:-	RP11-886D15.1	10446	chr11:104439859:-	ONLY_REF_SPLICE	YES	4	2	0.69	0.82	0.0942	0.0118	USMG5->chr10:105148798-105156223:-,up-regulated_during_skeletal_muscle_growth_5_homolog_(mouse),RP11-886D15.1->chr11:104316596-104480049:-	SNU478_BILIARY_TRACT	0.69	0.82	0.106	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	CCAT1--RP11-382A18.2	8	0	CCAT1	1279	chr8:128231055:-	RP11-382A18.2	7138	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0942	0	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	SNU478_BILIARY_TRACT	1	1	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	RP11-125O5.2--GOLT1B	8	0	RP11-125O5.2	9735	chr12:21294592:+	GOLT1B	15024	chr12:21659819:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0942	0	RP11-125O5.2->chr12:21200113-21329829:+,GOLT1B->chr12:21654715-21671342:+,golgi_transport_1B	SNU478_BILIARY_TRACT	1	1	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ND4L	3	17	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	11089	0	0	1	0.0353	0.2003	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU478_BILIARY_TRACT	0	1	0.2356	FALSE	343	822	44	305	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	NDUFA4--PHF14	7	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	777	55	0.01	0.13	0.0825	0.0118	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SNU478_BILIARY_TRACT	0.01	0.13	0.0943	FALSE	19	32	3	60	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ATP8	7	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0825	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU478_BILIARY_TRACT	1	1	0.0825	FALSE	230	193	14	283	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ATP8	6	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13055	0	0	1	0.0707	0.0236	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU478_BILIARY_TRACT	0	1	0.0943	FALSE	231	217	16	283	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ATP8	6	2	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	14192	0	0	1	0.0707	0.0236	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU478_BILIARY_TRACT	0	1	0.0943	FALSE	231	217	16	283	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	SLC1A5--MT-ND4L	6	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	676	0	0.01	1	0.0707	0.0236	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU478_BILIARY_TRACT	0.01	1	0.0943	FALSE	0	0	0	189	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	CCAT1--MYC	5	5	CCAT1	1279	chr8:128231055:-	MYC	9325	chr8:128750497:+	ONLY_REF_SPLICE	YES	21	1066	0.32	0.01	0.0589	0.0589	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SNU478_BILIARY_TRACT	0.01	0.32	0.1178	TRUE	0	0	0	1	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	JUP--MT-CO3	6	1	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	761	13262	0.01	0	0.0707	0.0118	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU478_BILIARY_TRACT	0	0.01	0.0825	FALSE	0	0	0	33	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ATP8	4	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	11402	1645	0	0.01	0.0471	0.0589	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU478_BILIARY_TRACT	0	0.01	0.106	FALSE	231	217	16	283	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	TOP3B--CYYR1	1	17	TOP3B	4297	chr22:22328729:-	CYYR1	25340	chr21:27852748:-	ONLY_REF_SPLICE	YES	109	0	0.14	1	0.0118	0.2003	TOP3B->chr22:22311397-22337213:-,topoisomerase_(DNA)_III_beta,CYYR1->chr21:27838528-27945603:-,cysteine_and_tyrosine_rich_1	SNU478_BILIARY_TRACT	0.14	1	0.2121	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ATP8	3	7	MT-ND4	1844	chrM:11603:+	MT-ATP8	5503	chrM:8490:+	INCL_NON_REF_SPLICE	YES	11879	973	0	0.01	0.0353	0.0825	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU478_BILIARY_TRACT	0	0.01	0.1178	FALSE	231	217	16	283	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	C15orf57--CBX3	4	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	41	34	0.13	0.15	0.0471	0.0236	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU478_BILIARY_TRACT	0.13	0.15	0.0707	TRUE	267	562	48	632	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	CIRBP--STK11	4	2	CIRBP	10200	chr19:1272050:+	STK11	19746	chr19:1216267:+	ONLY_REF_SPLICE	YES	129	0	0.04	1	0.0471	0.0236	LOCAL_REARRANGEMENT:+:[30956],CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	SNU478_BILIARY_TRACT	0.04	1	0.0707	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ND4L	3	6	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	11	0	0.45	1	0.0353	0.0707	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU478_BILIARY_TRACT	0.45	1	0.106	FALSE	344	826	44	306	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	SLC1A5--MT-ND4L	4	2	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	685	0	0.01	1	0.0471	0.0236	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU478_BILIARY_TRACT	0.01	1	0.0707	FALSE	0	0	0	189	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	CCAT1--MYC	3	5	CCAT1	1279	chr8:128231055:-	MYC	9322	chr8:128750494:+	ONLY_REF_SPLICE	YES	21	1095	0.28	0.01	0.0353	0.0589	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SNU478_BILIARY_TRACT	0.01	0.28	0.0942	FALSE	0	0	0	1	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ATP8	3	5	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	11362	0	0	1	0.0353	0.0589	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU478_BILIARY_TRACT	0	1	0.0942	FALSE	231	217	16	283	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	MT-TA--MT-TC	3	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0.0589	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU478_BILIARY_TRACT	1	1	0.0942	FALSE	462	80	0	856	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	C15orf57--CBX3	3	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	42	34	0.14	0.17	0.0353	0.0471	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU478_BILIARY_TRACT	0.14	0.17	0.0824	TRUE	267	562	48	632	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	LGALS3BP--ACTB	4	0	LGALS3BP	4091	chr17:76972129:-	ACTB	17100	chr7:5568161:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU478_BILIARY_TRACT	1	1	0.0471	TRUE	0	0	0	2	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	LRP6--ETV6	3	4	LRP6	1332	chr12:12419615:-	ETV6	44549	chr12:12022358:+	ONLY_REF_SPLICE	YES	1006	147	0.01	0.05	0.0353	0.0471	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+	SNU478_BILIARY_TRACT	0.01	0.05	0.0824	FALSE	0	0	0	1	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU478_BILIARY_TRACT	1	1	0.0471	FALSE	344	821	44	306	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	RP11-680G10.1--GSE1	3	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	13	1	0.32	0.0353	0.0353	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU478_BILIARY_TRACT	0.32	1	0.0706	TRUE	458	1351	185	561	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	ALDOA--KRT17	3	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	SNU478_BILIARY_TRACT	1	1	0.0353	TRUE	0	0	0	10	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	MANSC1--MT-CO3	3	0	MANSC1	6550	chr12:12483455:-	MT-CO3	11023	chrM:9422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0	MANSC1->MANSC_domain_containing_1,chr12:12482198-12503475:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU478_BILIARY_TRACT	1	1	0.0353	FALSE	0	0	0	1	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ATP8	3	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU478_BILIARY_TRACT	1	1	0.0353	FALSE	231	204	14	283	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU478_BILIARY_TRACT	1	1	0.0353	FALSE	344	821	44	306	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU478_BILIARY_TRACT	1	1	0.0353	FALSE	462	80	0	856	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	PSAP--KRT17	3	0	PSAP	5266	chr10:73588686:-	KRT17	16748	chr17:39780813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,KRT17->chr17:39775689-39781094:-,keratin_17	SNU478_BILIARY_TRACT	1	1	0.0353	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	CCAT1--MYC	2	1	CCAT1	1279	chr8:128231055:-	MYC	9366	chr8:128750538:+	ONLY_REF_SPLICE	YES	21	995	0.12	0	0.0236	0.0118	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SNU478_BILIARY_TRACT	0	0.12	0.0354	FALSE	0	0	0	1	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0236	0.0118	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU478_BILIARY_TRACT	0.75	1	0.0354	FALSE	292	1546	117	613	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	AC006538.4--TNFAIP2	2	0	AC006538.4	2436	chr19:2737046:-	TNFAIP2	8609	chr14:103592647:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	AC006538.4->chr19:2717767-2740046:-,TNFAIP2->TNF_alpha_induced_protein_2,chr14:103589779-103603776:+	SNU478_BILIARY_TRACT	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	MAML2--CEP57	2	0	MAML2	2798	chr11:96074547:-	CEP57	19069	chr11:95532396:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_v2:{count=3;pct=0.03%;dist=Ovary=1,Thyroid=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Urinary_Bladder=1},MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,CEP57->centrosomal_protein_57,chr11:95523129-95565857:+	SNU478_BILIARY_TRACT	1	1	0.0236	TRUE	0	1	0	3	1	TRUE	ACH-000377
SNU478_BILIARY_TRACT	POLE--ANKLE2	2	0	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	SNU478_BILIARY_TRACT	1	1	0.0236	TRUE	0	0	0	11	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	RCC1--SNX5	2	0	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	SNU478_BILIARY_TRACT	1	1	0.0236	TRUE	0	5	0	11	0	TRUE	ACH-000377
SNU478_BILIARY_TRACT	ATP2A2--IFT81	1	1	ATP2A2	3040	chr12:110720600:+	IFT81	46571	chr12:110618227:+	ONLY_REF_SPLICE	NO	341	28	0.01	0.07	0.0118	0.0118	YOSHIHARA_TCGA_num_samples[LUAD:2],{Klijn_CCL:Stomach=1,Cervix=1},LOCAL_REARRANGEMENT:+:[61959],ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+,IFT81->chr12:110562140-110656602:+,intraflagellar_transport_81	SNU478_BILIARY_TRACT	0.01	0.07	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	CUX1--MANSC1	1	1	CUX1	6304	chr7:101559505:+	MANSC1	62171	chr12:12491494:-	ONLY_REF_SPLICE	NO	90	2504	0.02	0	0.0118	0.0118	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,MANSC1->MANSC_domain_containing_1,chr12:12482198-12503475:-	SNU478_BILIARY_TRACT	0	0.02	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	FBRSL1--NOC4L	1	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33548	chr12:132635803:+	ONLY_REF_SPLICE	YES	18	91	0.1	0.02	0.0118	0.0118	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	SNU478_BILIARY_TRACT	0.02	0.1	0.0236	TRUE	3	48	0	26	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	FBRSL1--NOC4L	1	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	NO	18	91	0.1	0.02	0.0118	0.0118	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	SNU478_BILIARY_TRACT	0.02	0.1	0.0236	TRUE	3	48	0	26	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	LINC00473--SFT2D1	1	1	LINC00473	1520	chr6:166401017:-	SFT2D1	15573	chr6:166743735:-	ONLY_REF_SPLICE	YES	29	395	0.06	0.01	0.0118	0.0118	LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,SFT2D1->SFT2_domain_containing_1,chr6:166733216-166756079:-	SNU478_BILIARY_TRACT	0.01	0.06	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	RHOA--DAG1	1	1	RHOA	2179	chr3:49449253:-	DAG1	23192	chr3:49568230:+	ONLY_REF_SPLICE	YES	1091	189	0	0.01	0.0118	0.0118	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[55715],RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,DAG1->chr3:49506146-49573048:+,dystroglycan_1	SNU478_BILIARY_TRACT	0	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	UBAP1--UBAP2	1	1	UBAP1	1236	chr9:34179238:+	UBAP2	15944	chr9:34017187:-	ONLY_REF_SPLICE	YES	70	1	0.03	0.67	0.0118	0.0118	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	SNU478_BILIARY_TRACT	0.03	0.67	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000377
SNU478_BILIARY_TRACT	UBAP1--UBAP2	1	1	UBAP1	1236	chr9:34179238:+	UBAP2	28963	chr9:33960876:-	ONLY_REF_SPLICE	NO	70	43	0.03	0.04	0.0118	0.0118	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	SNU478_BILIARY_TRACT	0.03	0.04	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000377
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	218	53	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	2.101	0.5108	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.6118	TRUE	361	258	24	38	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIEZO1--GALNS	123	59	PIEZO1	11754	chr16:88798743:-	GALNS	42337	chr16:88898509:-	ONLY_REF_SPLICE	YES	123	37	0.6	0.83	1.1854	0.5686	LOCAL_REARRANGEMENT:-:[28523],PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1,GALNS->Oncogene{Bushman},chr16:88880142-88923378:-,galactosamine_(N-acetyl)-6-sulfatase	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.83	1.754	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFIX--ZNF93	113	56	NFIX	11381	chr19:13192669:+	ZNF93	26198	chr19:20026089:+	ONLY_REF_SPLICE	YES	37	30	0.82	0.85	1.089	0.5397	NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,ZNF93->chr19:20011722-20046384:+,zinc_finger_protein_93	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.85	1.6287	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4A--ZNF254	77	34	PDE4A	4765	chr19:10541762:+	ZNF254	34117	chr19:24309056:+	ONLY_REF_SPLICE	YES	27	43	0.8	0.72	0.7421	0.3277	PDE4A->Oncogene{Bushman},chr19:10527449-10580305:+,phosphodiesterase_4A,ZNF254->chr19:24216276-24312654:+,zinc_finger_protein_254	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	0.8	1.0698	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	70	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6746	0.2602	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9348	TRUE	508	994	45	981	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP6V0D1--AGRP	45	61	ATP6V0D1	1281	chr16:67514860:-	AGRP	20376	chr16:67517542:-	INCL_NON_REF_SPLICE	YES	127	1	0.45	0.99	0.4337	0.5879	LOCAL_REARRANGEMENT:-:[1334],ATP6V0D1->ATPase_H+_transporting_V0_subunit_d1,chr16:67471917-67515140:-,AGRP->agouti_related_neuropeptide,chr16:67516474-67517716:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.99	1.0216	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMARCC1--ZZEF1	53	17	SMARCC1	2624	chr3:47814307:-	ZZEF1	54588	chr17:3989949:-	ONLY_REF_SPLICE	YES	100	12	0.41	0.85	0.5108	0.1638	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.85	0.6746	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFIX--ZNF93	35	77	NFIX	11381	chr19:13192669:+	ZNF93	25652	chr19:20025543:+	ONLY_REF_SPLICE	YES	37	28	0.75	0.8	0.3373	0.7421	NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,ZNF93->chr19:20011722-20046384:+,zinc_finger_protein_93	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.8	1.0794	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	46	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	275	8	0.15	0.86	0.4433	0.0386	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.86	0.4819	TRUE	519	3926	326	965	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	44	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4241	0.0578	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4819	FALSE	462	80	0	856	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-191G24.1--OSBPL9	38	17	RP11-191G24.1	1138	chr1:51984118:+	OSBPL9	12967	chr1:52179675:+	ONLY_REF_SPLICE	YES	3	18	0.95	0.75	0.3662	0.1638	NEIGHBORS[15550],RP11-191G24.1->chr1:51983981-52027301:+,OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.95	0.53	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCMH1--TIE1	35	11	SCMH1	1096	chr1:41707731:-	TIE1	26582	chr1:43766644:+	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.3373	0.106	SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila),TIE1->Oncogene{Bushman},chr1:43766664-43788779:+,tyrosine_kinase_with_immunoglobulin_like_and_EGF_like_domains_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.4433	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPA2--EYA3	32	13	RPA2	1684	chr1:28240574:-	EYA3	18593	chr1:28343750:-	ONLY_REF_SPLICE	YES	172	51	0.21	0.47	0.3084	0.1253	LOCAL_REARRANGEMENT:-:[55598],RPA2->Oncogene{Bushman},chr1:28218035-28241257:-,replication_protein_A2,EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.47	0.4337	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTCF--TSNAXIP1	33	3	CTCF	1318	chr16:67596627:+	TSNAXIP1	19625	chr16:67848205:+	ONLY_REF_SPLICE	YES	5	4	0.88	0.9	0.318	0.0289	GTEx&tcga_normals:4/3694=0.11%,CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,TSNAXIP1->chr16:67840668-67866051:+,translin_associated_factor_X_interacting_protein_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.9	0.3469	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCMH1--TIE1	28	11	SCMH1	1096	chr1:41707731:-	TIE1	28803	chr1:43770522:+	ONLY_REF_SPLICE	YES	2	401	0.95	0.09	0.2699	0.106	SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila),TIE1->Oncogene{Bushman},chr1:43766664-43788779:+,tyrosine_kinase_with_immunoglobulin_like_and_EGF_like_domains_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.95	0.3759	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP6V0D1--AGRP	22	32	ATP6V0D1	1281	chr16:67514860:-	AGRP	20614	chr16:67517304:-	ONLY_REF_SPLICE	YES	127	5	0.3	0.92	0.212	0.3084	LOCAL_REARRANGEMENT:-:[1334],ATP6V0D1->ATPase_H+_transporting_V0_subunit_d1,chr16:67471917-67515140:-,AGRP->agouti_related_neuropeptide,chr16:67516474-67517716:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.92	0.5204	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	28	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	29	1	0.55	0.2699	0.0771	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.347	TRUE	458	1351	185	561	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	28	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2699	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2699	TRUE	0	0	0	518	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	22	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	98	1	0.22	0.212	0.0482	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.2602	TRUE	465	1949	224	605	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	6	58	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	5570	chr1:149591759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0.559	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6168	TRUE	361	258	24	38	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	6	0	0.81	1	0.1542	0.0964	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.2506	FALSE	499	1288	110	792	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TPM4--KCNV1	16	9	TPM4	3954	chr19:16187507:+	KCNV1	21395	chr8:110987421:-	ONLY_REF_SPLICE	YES	591	24	0.04	0.51	0.1542	0.0867	TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4,KCNV1->chr8:110975874-110988076:-,potassium_voltage-gated_channel_modifier_subfamily_V_member_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.51	0.2409	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	16	8	MT-ND5	2794	chrM:14130:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	0	5915	1	0	0.1542	0.0771	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2313	FALSE	47	27	1	24	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4A--ZNF254	14	15	PDE4A	3523	chr19:10531760:+	ZNF254	34117	chr19:24309056:+	ONLY_REF_SPLICE	YES	8	43	0.78	0.4	0.1349	0.1446	PDE4A->Oncogene{Bushman},chr19:10527449-10580305:+,phosphodiesterase_4A,ZNF254->chr19:24216276-24312654:+,zinc_finger_protein_254	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.78	0.2795	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDAC1--TMBIM6	17	1	HDAC1	1133	chr1:32757819:+	TMBIM6	16081	chr12:50109164:+	ONLY_REF_SPLICE	YES	32	0	0.36	1	0.1638	0.0096	HDAC1->chr1:32757687-32799236:+,histone_deacetylase_1,TMBIM6->chr12:50101508-50158717:+,transmembrane_BAX_inhibitor_motif_containing_6	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.1734	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACAP2--PPP1R2	15	8	ACAP2	1284	chr3:195163524:-	PPP1R2	41684	chr3:195256702:-	ONLY_REF_SPLICE	YES	68	156	0.25	0.13	0.1446	0.0771	LOCAL_REARRANGEMENT:-:[77414],ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-,PPP1R2->chr3:195241221-195270209:-,protein_phosphatase_1_regulatory_inhibitor_subunit_2	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.25	0.2217	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1542	0.0193	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1735	FALSE	499	1288	110	792	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	9	28	MT-ND5	2813	chrM:14149:+	MT-ND4	5957	chrM:10904:+	INCL_NON_REF_SPLICE	YES	0	2778	1	0.01	0.0867	0.2699	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.3566	FALSE	29	25	1	23	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP6V0D1--AGRP	12	15	ATP6V0D1	1281	chr16:67514860:-	AGRP	20905	chr16:67517013:-	ONLY_REF_SPLICE	YES	127	7	0.18	0.79	0.1157	0.1446	LOCAL_REARRANGEMENT:-:[1334],ATP6V0D1->ATPase_H+_transporting_V0_subunit_d1,chr16:67471917-67515140:-,AGRP->agouti_related_neuropeptide,chr16:67516474-67517716:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.79	0.2603	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCMH1--TIE1	15	1	SCMH1	1096	chr1:41707731:-	TIE1	29185	chr1:43770904:+	ONLY_REF_SPLICE	YES	2	319	0.89	0.05	0.1446	0.0096	SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila),TIE1->Oncogene{Bushman},chr1:43766664-43788779:+,tyrosine_kinase_with_immunoglobulin_like_and_EGF_like_domains_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.89	0.1542	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF253--UNC13A	14	1	ZNF253	1114	chr19:19976808:+	UNC13A	41447	chr19:17735761:-	ONLY_REF_SPLICE	YES	3	7	0.83	0.68	0.1349	0.0096	ZNF253->chr19:19976695-20005483:+,zinc_finger_protein_253,UNC13A->chr19:17712137-17799401:-,unc-13_homolog_A_(C._elegans)	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	0.83	0.1445	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	12	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1157	0.0578	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1735	FALSE	462	80	0	856	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-191G24.1--OSBPL9	9	17	RP11-191G24.1	1175	chr1:51984155:+	OSBPL9	12967	chr1:52179675:+	ONLY_REF_SPLICE	YES	1	18	0.96	0.59	0.0867	0.1638	NEIGHBORS[15550],RP11-191G24.1->chr1:51983981-52027301:+,OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	0.96	0.2505	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ILF3--SLC44A2	10	12	ILF3	1227	chr19:10765163:+	SLC44A2	27610	chr19:10738398:+	ONLY_REF_SPLICE	YES	529	89	0.04	0.2	0.0964	0.1157	LOCAL_REARRANGEMENT:+:[9702],ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.2	0.2121	TRUE	0	1	0	1	1	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4A--ZNF254	4	36	PDE4A	5902	chr19:10543247:+	ZNF254	34117	chr19:24309056:+	ONLY_REF_SPLICE	YES	34	43	0.54	0.48	0.0386	0.347	PDE4A->Oncogene{Bushman},chr19:10527449-10580305:+,phosphodiesterase_4A,ZNF254->chr19:24216276-24312654:+,zinc_finger_protein_254	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.54	0.3856	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--NCL	11	0	MT-ND6	1333	chrM:14341:-	NCL	15595	chr2:232320168:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.106	0	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,NCL->chr2:232318242-232348352:-,nucleolin	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.106	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SETD4--PKNOX1	10	1	SETD4	5189	chr21:37429407:-	PKNOX1	22071	chr21:44424436:+	ONLY_REF_SPLICE	YES	42	5	0.21	0.69	0.0964	0.0096	SETD4->SET_domain_containing_4,chr21:37406839-37451687:-,PKNOX1->Oncogene{Bushman},PBX/knotted_1_homeobox_1,chr21:44394620-44453691:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.69	0.106	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	9	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7621	17633	0	0	0.0867	0.0193	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.106	FALSE	183	104	9	328	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAF1--RP11-522M21.3	8	4	FAF1	2661	chr1:51323601:-	RP11-522M21.3	31486	chr1:245837207:-	ONLY_REF_SPLICE	YES	86	5	0.12	0.71	0.0771	0.0386	FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,RP11-522M21.3->chr1:245837034-245839780:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.71	0.1157	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMPR2--CFLAR-AS1	7	7	BMPR2	1615	chr2:203242273:+	CFLAR-AS1	31815	chr2:202015982:-	ONLY_REF_SPLICE	YES	9	0	0.61	1	0.0675	0.0675	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,CFLAR-AS1->CFLAR_antisense_RNA_1,chr2:202005007-202022546:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	1	0.135	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	7	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	74	16	0.16	0.47	0.0675	0.0675	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.47	0.135	TRUE	267	562	48	632	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF253--UNC13A	7	7	ZNF253	3425	chr19:19990955:+	UNC13A	41447	chr19:17735761:-	ONLY_REF_SPLICE	YES	5	7	0.74	0.67	0.0675	0.0675	ZNF253->chr19:19976695-20005483:+,zinc_finger_protein_253,UNC13A->chr19:17712137-17799401:-,unc-13_homolog_A_(C._elegans)	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.74	0.135	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	5	14	MT-ND5	2697	chrM:14033:+	MT-ND4	6140	chrM:11087:+	INCL_NON_REF_SPLICE	YES	373	9974	0.05	0	0.0482	0.1349	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.1831	FALSE	47	27	1	24	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TROAP--TUBA1C	8	2	TROAP	5059	chr12:49721113:+	TUBA1C	14925	chr12:49621874:+	ONLY_REF_SPLICE	YES	109	0	0.08	1	0.0771	0.0193	LOCAL_REARRANGEMENT:+:[49905],TROAP->chr12:49717019-49725514:+,trophinin_associated_protein,TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0964	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAB3--MPP1	7	5	GAB3	12230	chrX:153906452:-	MPP1	22305	chrX:154020560:-	INCL_NON_REF_SPLICE	YES	130	349	0.08	0.03	0.0675	0.0482	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[27101],GAB3->GRB2_associated_binding_protein_3,chrX:153903529-153979858:-,MPP1->Oncogene{Bushman},chrX:154006959-154049282:-,membrane_palmitoylated_protein_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.08	0.1157	TRUE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	8	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	7676	16774	0	0	0.0771	0.0096	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0867	FALSE	183	104	9	328	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0771	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0771	FALSE	462	80	0	856	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	6	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	75	15	0.15	0.46	0.0578	0.0675	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.46	0.1253	TRUE	267	562	48	632	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0.0675	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1253	FALSE	462	80	0	856	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0.0193	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0868	FALSE	499	1288	110	792	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	17	MT-ATP6	1527	chrM:9053:+	MT-CO1	5223	chrM:6445:+	INCL_NON_REF_SPLICE	YES	3928	14454	0.01	0	0.0289	0.1638	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1927	FALSE	183	104	9	328	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	7	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	7648	14255	0	0	0.0675	0.0096	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0771	FALSE	183	104	9	328	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	9	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2355	17853	0.01	0	0.0482	0.0867	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1349	FALSE	183	104	9	328	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	4	13	MT-ND5	2730	chrM:14066:+	MT-ND4	6214	chrM:11161:+	INCL_NON_REF_SPLICE	YES	4	10211	0.81	0	0.0386	0.1253	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.81	0.1639	FALSE	47	27	1	24	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPNE7--SPIRE2	7	0	CPNE7	2487	chr16:89644129:+	SPIRE2	30358	chr16:89922008:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0675	0	CPNE7->chr16:89642176-89663654:+,copine_7,SPIRE2->chr16:89884587-89937727:+,spire_type_actin_nucleation_factor_2	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0675	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--EGFL7	7	0	MIR142	1039	chr17:56409831:-	EGFL7	13933	chr9:139565402:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	MIR142->chr17:56408245-56409869:-,microRNA_142,EGFL7->EGF_like_domain_multiple_7,chr9:139553308-139567130:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0675	TRUE	0	0	0	2	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9230	17202	0	0	0.0578	0.0386	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0964	FALSE	183	104	9	328	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	7	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0675	TRUE	0	0	0	434	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LDLR--SMARCA4	6	3	LDLR	11754	chr19:11222315:+	SMARCA4	68040	chr19:11172460:+	ONLY_REF_SPLICE	YES	119	369	0.07	0.02	0.0578	0.0289	LOCAL_REARRANGEMENT:+:[23967],LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.07	0.0867	TRUE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	3	15	MT-ND5	2662	chrM:13998:+	MT-ND4	6107	chrM:11054:+	INCL_NON_REF_SPLICE	YES	1281	8707	0.01	0	0.0289	0.1446	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1735	FALSE	47	27	1	24	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAB3--MPP1	5	5	GAB3	12221	chrX:153906461:-	MPP1	22305	chrX:154020560:-	INCL_NON_REF_SPLICE	YES	132	349	0.07	0.03	0.0482	0.0482	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[27101],GAB3->GRB2_associated_binding_protein_3,chrX:153903529-153979858:-,MPP1->Oncogene{Bushman},chrX:154006959-154049282:-,membrane_palmitoylated_protein_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.07	0.0964	TRUE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZZEF1--SMARCC1	6	1	ZZEF1	40159	chr17:3953002:-	SMARCC1	66011	chr3:47814426:-	ONLY_REF_SPLICE	YES	32	117	0.18	0.06	0.0578	0.0096	ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1,SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.18	0.0674	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C10orf112--PLXDC2	5	4	C10orf112	26834	chr10:19896831:+	PLXDC2	37923	chr10:20290704:+	ONLY_REF_SPLICE	YES	0	5	1	0.64	0.0482	0.0386	NEIGHBORS[25838],C10orf112->chr10:19492779-20079330:+,PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.0868	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1380	chrM:8906:+	MT-CO1	5953	chrM:7175:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0578	FALSE	183	104	9	328	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	6	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0578	TRUE	0	0	0	434	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TPM4--KCNV1	6	0	TPM4	3429	chr19:16186982:+	KCNV1	21395	chr8:110987421:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0578	0	TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4,KCNV1->chr8:110975874-110988076:-,potassium_voltage-gated_channel_modifier_subfamily_V_member_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0578	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAF1--AGBL4	5	3	FAF1	3708	chr1:51267303:-	AGBL4	36084	chr1:49511472:-	ONLY_REF_SPLICE	YES	132	0	0.06	1	0.0482	0.0289	{Klijn_CCL:Lung=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0771	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBA2--MT-CO2	5	3	HBA2	1308	chr16:223153:+	MT-CO2	4899	chrM:7620:+	INCL_NON_REF_SPLICE	YES	4429	0	0	1	0.0482	0.0289	HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0771	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	4	7	MT-ND5	2718	chrM:14054:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	15	5915	0.42	0	0.0386	0.0675	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.42	0.1061	FALSE	47	27	1	24	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	3	11	MT-ND5	2224	chrM:13560:+	MT-ND4	6098	chrM:11045:+	INCL_NON_REF_SPLICE	YES	2982	8074	0	0	0.0289	0.106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1349	FALSE	47	29	1	23	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AGBL4--SMYD3	5	2	AGBL4	7088	chr1:49511256:-	SMYD3	47327	chr1:246093239:-	ONLY_REF_SPLICE	YES	0	421	1	0.02	0.0482	0.0193	AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0675	TRUE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AURKB--LINC00324	5	2	AURKB	4382	chr17:8109809:-	LINC00324	11570	chr17:8124827:-	ONLY_REF_SPLICE	YES	222	0	0.03	1	0.0482	0.0193	LOCAL_REARRANGEMENT:-:[10042],AURKB->ArcherDX_panel,FoundationOne_panel,aurora_kinase_B,chr17:8108056-8113918:-,LINC00324->chr17:8123960-8127361:-,long_intergenic_non-protein_coding_RNA_324	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0675	TRUE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	6	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	9129	14541	0	0	0.0386	0.0578	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0964	FALSE	183	104	9	328	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0.0578	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0964	FALSE	499	1288	110	792	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	5	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	8784	14399	0	0	0.0386	0.0482	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0868	FALSE	183	104	9	328	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM171B--ITGAV	5	0	FAM171B	7215	chr2:187618776:+	ITGAV	29035	chr2:187511413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0482	0	LOCAL_REARRANGEMENT:+:[13070],FAM171B->chr2:187558698-187630685:+,family_with_sequence_similarity_171_member_B,ITGAV->chr2:187454792-187545628:+,integrin_subunit_alpha_V	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0482	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFIX--ZNF93	1	16	NFIX	11381	chr19:13192669:+	ZNF93	27325	chr19:20027369:+	ONLY_REF_SPLICE	YES	37	48	0.31	0.26	0.0096	0.1542	NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,ZNF93->chr19:20011722-20046384:+,zinc_finger_protein_93	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.31	0.1638	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TPR--SFPQ	5	0	TPR	24437	chr1:186311278:-	SFPQ	58667	chr1:35648991:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0482	0	TPR->Oncogene{Bushman},chr1:186280784-186344825:-,translocated_promoter_region,_nuclear_basket_protein,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0482	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--NCL	4	3	MT-ND6	1333	chrM:14341:-	NCL	10328	chr2:232325461:-	INCL_NON_REF_SPLICE	YES	2441	1819	0	0	0.0386	0.0289	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,NCL->chr2:232318242-232348352:-,nucleolin	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0675	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5332	chrM:6554:+	INCL_NON_REF_SPLICE	YES	7621	17865	0	0	0.0386	0.0193	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0579	FALSE	183	104	9	328	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	4	2	MT-ND5	1200	chrM:12536:+	MT-ND4	6022	chrM:10969:+	INCL_NON_REF_SPLICE	YES	67	5752	0.08	0	0.0386	0.0193	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.0579	FALSE	12	16	0	18	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	3	6	MT-ND5	1673	chrM:13009:+	MT-ND4	5950	chrM:10897:+	INCL_NON_REF_SPLICE	YES	2428	2399	0	0	0.0289	0.0578	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0867	FALSE	28	25	0	21	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0386	0.0193	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0579	FALSE	515	4851	409	746	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED25--AP2A1	4	1	MED25	11627	chr19:50339663:+	AP2A1	19639	chr19:50295192:+	ONLY_REF_SPLICE	YES	41	154	0.11	0.03	0.0386	0.0096	LOCAL_REARRANGEMENT:+:[11169],MED25->chr19:50321539-50342073:+,mediator_complex_subunit_25,AP2A1->adaptor_related_protein_complex_2_alpha_1_subunit,chr19:50270225-50310370:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.11	0.0482	TRUE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	5	MT-ATP6	1134	chrM:8660:+	MT-CO1	5163	chrM:6385:+	INCL_NON_REF_SPLICE	YES	7742	14109	0	0	0.0289	0.0482	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0771	FALSE	183	104	9	328	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf63--GNB1	4	0	C1orf63	8720	chr1:25594231:-	GNB1	21965	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMSS1--COL8A1	4	0	CMSS1	1210	chr3:99536887:+	COL8A1	34550	chr3:99463741:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	GTEx&tcga_normals:2/3694=0.05%,LOCAL_REARRANGEMENT:+:[18608],CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast),COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	1	0	1	1	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND1	4	0	MT-CO2	1298	chrM:7883:+	MT-ND1	5225	chrM:3847:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	FALSE	12	14	1	5	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	3	4	MT-ND5	1626	chrM:12962:+	MT-ND4	6034	chrM:10981:+	INCL_NON_REF_SPLICE	YES	1865	5954	0	0	0.0289	0.0386	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0675	FALSE	45	26	0	21	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	4	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0.0386	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0675	FALSE	499	1288	110	792	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRDX1--GPBP1L1	4	0	PRDX1	3556	chr1:45984610:-	GPBP1L1	24606	chr1:46099908:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	PRDX1->Oncogene{Bushman},chr1:45976708-45988719:-,peroxiredoxin_1,GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	3	3	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0289	0.0289	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0578	TRUE	0	2	0	37	2	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	7541	13861	0	0	0.0289	0.0096	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0385	FALSE	183	104	9	328	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND1	3	1	MT-CO2	1359	chrM:7944:+	MT-ND1	4894	chrM:3516:+	INCL_NON_REF_SPLICE	YES	11935	5045	0	0	0.0289	0.0096	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0385	FALSE	12	14	1	5	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAPZB--UBR4	3	0	CAPZB	1137	chr1:19811930:-	UBR4	27427	chr1:19514034:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INPP5B--SF3A3	3	0	INPP5B	5849	chr1:38406360:-	SF3A3	48547	chr1:38425847:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_REARRANGEMENT:-:[9918],INPP5B->chr1:38326369-38412729:-,inositol_polyphosphate-5-phosphatase_B,SF3A3->chr1:38422647-38456593:-,splicing_factor_3a_subunit_3	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND1	3	0	MT-CO2	1257	chrM:7842:+	MT-ND1	5185	chrM:3807:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0289	FALSE	12	14	1	5	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	3	0	MT-ND5	1408	chrM:12744:+	MT-ND4	6392	chrM:11339:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0289	FALSE	18	23	1	20	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0289	FALSE	16	356	14	466	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-191G24.1--OSBPL9	1	8	RP11-191G24.1	1138	chr1:51984118:+	OSBPL9	17381	chr1:52211208:+	ONLY_REF_SPLICE	YES	3	283	0.75	0.03	0.0096	0.0771	NEIGHBORS[15550],RP11-191G24.1->chr1:51983981-52027301:+,OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.75	0.0867	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-321K16.1--SLC25A48	2	3	CTC-321K16.1	4781	chr5:134965066:+	SLC25A48	10390	chr5:135178105:+	ONLY_REF_SPLICE	NO	1	0	0.83	1	0.0193	0.0289	CTC-321K16.1->chr5:134895267-134970564:+,SLC25A48->chr5:135170338-135224326:+,solute_carrier_family_25_member_48	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0482	TRUE	0	3	0	3	3	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ILF3--SLC44A2	1	7	ILF3	1227	chr19:10765163:+	SLC44A2	28893	chr19:10741733:+	ONLY_REF_SPLICE	YES	529	70	0.01	0.1	0.0096	0.0675	LOCAL_REARRANGEMENT:+:[9702],ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.1	0.0771	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAB3--MPP1	2	2	GAB3	10273	chrX:153908409:-	MPP1	22305	chrX:154020560:-	ONLY_REF_SPLICE	YES	211	349	0.02	0.01	0.0193	0.0193	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[27101],GAB3->GRB2_associated_binding_protein_3,chrX:153903529-153979858:-,MPP1->Oncogene{Bushman},chrX:154006959-154049282:-,membrane_palmitoylated_protein_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0386	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EFCAB2--KIF26B	2	1	EFCAB2	9604	chr1:245246990:+	KIF26B	27964	chr1:245530136:+	ONLY_REF_SPLICE	YES	55	0	0.05	1	0.0193	0.0096	NEIGHBORS[27821],EFCAB2->EF-hand_calcium_binding_domain_2,chr1:245133007-245290466:+,KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0289	FALSE	12	37	1	2	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AAK1--KIAA0100	2	0	AAK1	19555	chr2:69732701:-	KIAA0100	62916	chr17:26942264:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	AAK1->AP2_associated_kinase_1,chr2:69688532-69901481:-,KIAA0100->KIAA0100,chr17:26941458-26972472:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC009403.2--ACADM	2	0	AC009403.2	2738	chr7:155436162:-	ACADM	26040	chr1:76253182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	AC009403.2->chr7:155403925-155437899:-,ACADM->Oncogene{Bushman},acyl-CoA_dehydrogenase,_C-4_to_C-12_straight_chain,chr1:76190036-76253260:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AGBL4--SMYD3	1	4	AGBL4	8128	chr1:49332863:-	SMYD3	47327	chr1:246093239:-	ONLY_REF_SPLICE	YES	0	421	1	0.01	0.0096	0.0386	AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0482	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP6--EIF3A	2	0	ARHGAP6	15294	chrX:11196220:-	EIF3A	44471	chr10:120810186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ARHGAP6->Rho_GTPase_activating_protein_6,chrX:11136239-11683821:-,EIF3A->Oncogene{Bushman},chr10:120794356-120840316:-,eukaryotic_translation_initiation_factor_3_subunit_A	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMP2K--ANXA3	2	0	BMP2K	1380	chr4:79697875:+	ANXA3	32992	chr4:79494334:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+,ANXA3->annexin_A3,chr4:79472673-79531597:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	1	0	1	1	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	2	0	CCDC26	4666	chr8:130411760:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	4	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD38--BST1	2	0	CD38	1373	chr4:15780270:+	BST1	26910	chr4:15733363:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[39962],CD38->CD38_molecule,chr4:15779898-15854853:+,BST1->bone_marrow_stromal_cell_antigen_1,chr4:15704573-15739936:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF4G2--EPB41L4A-AS1	2	0	EIF4G2	1406	chr11:10830252:-	EPB41L4A-AS1	17239	chr5:111497400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2,EPB41L4A-AS1->EPB41L4A_antisense_RNA_1,chr5:111496223-111499973:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ENTPD4--TAF1	2	0	ENTPD4	7688	chr8:23299106:-	TAF1	25481	chrX:70587349:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ENTPD4->chr8:23243296-23315208:-,ectonucleoside_triphosphate_diphosphohydrolase_4,TAF1->ArcherDX_panel,FoundationOne_panel,TATA-box_binding_protein_associated_factor_1,chrX:70586114-70752224:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GARNL3--FAHD2A	2	0	GARNL3	3310	chr9:130005528:+	FAHD2A	46715	chr2:96071301:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GARNL3->GTPase_activating_Rap/RanGAP_domain_like_3,chr9:129986544-130155939:+,FAHD2A->chr2:96068469-96082364:+,fumarylacetoacetate_hydrolase_domain_containing_2A	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLUD1P3--SCG5	2	0	GLUD1P3	1312	chr10:75490631:+	SCG5	8434	chr15:32935787:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GLUD1P3->chr10:75490320-75497069:+,glutamate_dehydrogenase_1_pseudogene_3,SCG5->chr15:32933877-32989299:+,secretogranin_V	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDAC4--NDUFA10	2	0	HDAC4	7196	chr2:240158289:-	NDUFA10	51999	chr2:240960829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=6;pct=0.07%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1,Muscle_-_Skeletal=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Cells_-_Transformed_fibroblasts=1},HDAC4->Oncogene{Bushman},chr2:239969864-240323348:-,histone_deacetylase_4,NDUFA10->NADH:ubiquinone_oxidoreductase_subunit_A10,chr2:240831867-240964819:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPC--PARD3	2	0	HNRNPC	1197	chr14:21737457:-	PARD3	49159	chr10:34420511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2),PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBAP1--NIT2	2	0	HSPBAP1	1208	chr3:122512464:-	NIT2	25565	chr3:100071248:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	HSPBAP1->HSPB1_associated_protein_1,Oncogene{Bushman},chr3:122458846-122512671:-,NIT2->chr3:100053545-100075710:+,nitrilase_family_member_2	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL23R--BMI1	2	0	IL23R	7612	chr1:67673381:+	BMI1	20290	chr10:22615360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	IL23R->chr1:67632083-67725662:+,interleukin_23_receptor,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MARK4--CLPTM1	2	0	MARK4	2472	chr19:45754897:+	CLPTM1	26919	chr19:45465220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	LOCAL_REARRANGEMENT:+:[85947],MARK4->Oncogene{Bushman},chr19:45582546-45808541:+,microtubule_affinity_regulating_kinase_4,CLPTM1->chr19:45457842-45496599:+,cleft_lip_and_palate_associated_transmembrane_protein_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAT2A--RBM39	2	0	MAT2A	4788	chr2:85770157:+	RBM39	18076	chr20:34320057:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	MAT2A->chr2:85766288-85772403:+,methionine_adenosyltransferase_2A,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MOSPD2--CD99P1	2	0	MOSPD2	1318	chrX:14891880:+	CD99P1	33615	chrX:2556015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	MOSPD2->chrX:14891563-14940449:+,motile_sperm_domain_containing_2,CD99P1->CD99_molecule_pseudogene_1,chrX:2527389-2575270:+,chrY:2477389-2525270:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFA4--PHF14	2	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	19	32	3	60	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOL9--IPO5	2	0	NOL9	2649	chr1:6610456:-	IPO5	39381	chr13:98654721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	NOL9->chr1:6581407-6614595:-,nucleolar_protein_9,IPO5->chr13:98605912-98676551:+,importin_5	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDS5B--KPNA3	2	0	PDS5B	1167	chr13:33160730:+	KPNA3	49668	chr13:50321129:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,KPNA3->chr13:50273447-50367057:-,karyopherin_subunit_alpha_3	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PEAK1--TSPAN3	2	0	PEAK1	1139	chr15:77712348:-	TSPAN3	35139	chr15:77348597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	NEIGHBORS[24145],PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1,TSPAN3->chr15:77336359-77376326:-,tetraspanin_3	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	FALSE	0	0	0	2	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2E--CNN2	2	0	POLR2E	1341	chr19:1095258:-	CNN2	17165	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	LOCAL_INVERSION:-:+:[47526],POLR2E->chr19:1086594-1095598:-,polymerase_(RNA)_II_subunit_E,CNN2->calponin_2,chr19:1026298-1039068:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRRC2B--PPAPDC3	2	0	PRRC2B	9243	chr9:134323191:+	PPAPDC3	44222	chr9:134183310:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	LOCAL_REARRANGEMENT:+:[84831],PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,PPAPDC3->chr9:134165081-134184649:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	2	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMD14--MBD5	2	0	PSMD14	2882	chr2:162173080:+	MBD5	24694	chr2:148798775:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14,MBD5->chr2:148778580-149275805:+,methyl-CpG_binding_domain_protein_5	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABEP2--EIF4A2	2	0	RABEP2	1263	chr16:28947585:-	EIF4A2	22906	chr3:186504916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	RABEP2->chr16:28915742-28947847:-,rabaptin,_RAB_GTPase_binding_effector_protein_2,EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-158I13.2--TTC13	2	0	RP11-158I13.2	1097	chr2:27806009:+	TTC13	21633	chr1:231097049:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	RP11-158I13.2->chr2:27805913-27858041:+,TTC13->chr1:231041989-231114621:-,tetratricopeptide_repeat_domain_13	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-245P10.4--UBAP2	2	0	RP11-245P10.4	1098	chr1:228595179:+	UBAP2	30989	chr9:33933626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	RP11-245P10.4->chr1:228595082-228597395:+,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-435B5.4--EPB41L4A-AS1	2	0	RP11-435B5.4	2843	chr1:143465380:-	EPB41L4A-AS1	20775	chr5:111497400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	RP11-435B5.4->chr1:143354963-143467632:-,EPB41L4A-AS1->EPB41L4A_antisense_RNA_1,chr5:111496223-111499973:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SENP6--SLC22A23	2	0	SENP6	2068	chr6:76312292:+	SLC22A23	48612	chr6:3298452:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+,SLC22A23->Oncogene{Bushman},chr6:3269196-3457256:-,solute_carrier_family_22_member_23	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SH3BGRL3--CEP85	2	0	SH3BGRL3	2028	chr1:26606694:+	CEP85	20441	chr1:26603026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	LOCAL_REARRANGEMENT:+:[368],SH3BGRL3->SH3_domain_binding_glutamate_rich_protein_like_3,chr1:26605667-26608007:+,CEP85->centrosomal_protein_85,chr1:26560691-26605299:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLIRP--SPATS2	2	0	SLIRP	4730	chr14:78182222:+	SPATS2	33216	chr12:49906645:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	SLIRP->SRA_stem-loop_interacting_RNA_binding_protein,chr14:78174414-78227447:+,SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG8--RNF219	2	0	SNHG8	1429	chr4:119200292:+	RNF219	10813	chr13:79191257:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,RNF219->chr13:79188426-79233314:-,ring_finger_protein_219	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPTA1--RASSF1	2	0	SPTA1	37666	chr1:158604333:-	RASSF1	56288	chr3:50375442:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	SPTA1->ArcherDX_panel,FoundationOne_panel,chr1:158580496-158656488:-,spectrin_alpha,_erythrocytic_1,RASSF1->Oncogene{Bushman},Ras_association_domain_family_member_1,chr3:50367219-50378411:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SREBF1--HNRNPA2B1	2	0	SREBF1	1285	chr17:17740041:-	HNRNPA2B1	20650	chr7:26237352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GTEx&tcga_normals:1/3694=0.03%,SREBF1->chr17:17713713-17740325:-,sterol_regulatory_element_binding_transcription_factor_1,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM242--FBXO5	2	0	TMEM242	3035	chr6:157739814:-	FBXO5	12974	chr6:153296756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	TMEM242->chr6:157710418-157744633:-,transmembrane_protein_242,FBXO5->F-box_protein_5,Oncogene{Bushman},chr6:153291664-153304714:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC12--OSBPL9	2	0	TXNDC12	3233	chr1:52507209:-	OSBPL9	42341	chr1:52246836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},TXNDC12->chr1:52485803-52521843:-,thioredoxin_domain_containing_12,OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	1	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UCP2--PHF20L1	2	0	UCP2	2744	chr11:73692521:-	PHF20L1	38682	chr8:133848785:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	UCP2->chr11:73685712-73694352:-,uncoupling_protein_2,PHF20L1->PHD_finger_protein_20-like_1,chr8:133787618-133861052:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UROS--GDI2	2	0	UROS	1220	chr10:127511598:-	GDI2	23323	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	UROS->chr10:127477146-127511817:-,uroporphyrinogen_III_synthase,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XRN2--U2AF1	2	0	XRN2	8014	chr20:21314256:+	U2AF1	39595	chr21:44514898:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFP36--TMPO	2	0	ZFP36	1116	chr19:39897568:+	TMPO	15047	chr12:98931253:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ZFP36->Oncogene{Bushman},ZFP36_ring_finger_protein,chr19:39897453-39900052:+,TMPO->chr12:98909290-98944157:+,thymopoietin	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF253--UNC13A	2	0	ZNF253	1114	chr19:19976808:+	UNC13A	45732	chr19:17729771:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ZNF253->chr19:19976695-20005483:+,zinc_finger_protein_253,UNC13A->chr19:17712137-17799401:-,unc-13_homolog_A_(C._elegans)	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF432--AP3B1	2	0	ZNF432	1164	chr19:52598828:-	AP3B1	22385	chr5:77512061:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ZNF432->chr19:52534632-52598991:-,zinc_finger_protein_432,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LDLR--SMARCA4	1	3	LDLR	13239	chr19:11224438:+	SMARCA4	68040	chr19:11172460:+	ONLY_REF_SPLICE	NO	64	369	0.06	0.01	0.0096	0.0289	LOCAL_REARRANGEMENT:+:[23967],LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.0385	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C11orf73--PICALM	1	2	C11orf73	3558	chr11:86017524:+	PICALM	14527	chr11:85742653:-	ONLY_REF_SPLICE	YES	155	414	0.02	0.01	0.0096	0.0193	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1},C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0289	FALSE	1	2	0	10	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--RP3-462D8.2	1	1	BCR	30645	chr22:23652620:+	RP3-462D8.2	41370	chr22:25678258:-	ONLY_REF_SPLICE	YES	172	0	0.01	1	0.0096	0.0096	BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,RP3-462D8.2->chr22:25675496-25678641:-	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMP2K--ANXA3	1	1	BMP2K	16502	chr4:79800045:+	ANXA3	34080	chr4:79500181:+	ONLY_REF_SPLICE	NO	149	43	0.01	0.04	0.0096	0.0096	BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+,ANXA3->annexin_A3,chr4:79472673-79531597:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMP2K--ANXA3	1	1	BMP2K	8117	chr4:79772210:+	ANXA3	34080	chr4:79500181:+	ONLY_REF_SPLICE	YES	191	43	0.01	0.04	0.0096	0.0096	BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+,ANXA3->annexin_A3,chr4:79472673-79531597:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMP2K--ANXA3	1	1	BMP2K	2499	chr4:79747309:+	ANXA3	32992	chr4:79494334:+	ONLY_REF_SPLICE	YES	133	41	0.01	0.05	0.0096	0.0096	BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+,ANXA3->annexin_A3,chr4:79472673-79531597:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-550B14.7--HMGB1	1	1	CTC-550B14.7	1272	chr19:55517832:+	HMGB1	15092	chr13:31037831:-	ONLY_REF_SPLICE	NO	5	844	0.29	0	0.0096	0.0096	CTC-550B14.7->chr19:55517561-55559454:+,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.29	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ECHDC1--RNF146	1	1	ECHDC1	10423	chr6:127635961:-	RNF146	20245	chr6:127601376:+	ONLY_REF_SPLICE	YES	229	6	0.01	0.25	0.0096	0.0096	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=5;pct=0.06%;dist=Thyroid=2,Whole_Blood=1,Heart_-_Left_Ventricle=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[143],ECHDC1->chr6:127609855-127664754:-,ethylmalonyl-CoA_decarboxylase_1,RNF146->chr6:127587755-127609712:+,ring_finger_protein_146	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.25	0.0192	FALSE	1	2	1	3	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HK1--VPS26A	1	1	HK1	10761	chr10:71075770:+	VPS26A	37356	chr10:70892654:+	ONLY_REF_SPLICE	NO	688	2	0	0.5	0.0096	0.0096	LOCAL_REARRANGEMENT:+:[97123],HK1->chr10:71029740-71161638:+,hexokinase_1,VPS26A->VPS26_retromer_complex_component_A,chr10:70883268-70932617:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.5	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--CAPN11	1	1	HSP90AB1	4068	chr6:44217891:+	CAPN11	12987	chr6:44134495:+	ONLY_REF_SPLICE	YES	5408	0	0	1	0.0096	0.0096	LOCAL_REARRANGEMENT:+:[62685],HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,CAPN11->calpain_11,chr6:44126548-44152139:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TFRC--PCYT1A	1	1	TFRC	16761	chr3:195785155:-	PCYT1A	38184	chr3:195966606:-	ONLY_REF_SPLICE	YES	2142	168	0	0.01	0.0096	0.0096	TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor,PCYT1A->chr3:195941093-196014828:-,phosphate_cytidylyltransferase_1,_choline,_alpha	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000387
TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZRANB3--R3HDM1	1	1	ZRANB3	2907	chr2:136261899:-	R3HDM1	43752	chr2:136360070:+	ONLY_REF_SPLICE	YES	7	118	0.22	0.02	0.0096	0.0096	LOCAL_INVERSION:-:+:[219],ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3,R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+	TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.22	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000387
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	1187	36841	IGKV2-40	1302	chr2:89629885:-	AC096579.7	6005	chr2:89161428:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	18.8105	583.8228	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	602.6333	TRUE	0	4	0	1	4	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	23	36806	IGKV2-40	1300	chr2:89629887:-	AC096579.7	6003	chr2:89161430:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3645	583.2682	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	583.6327	TRUE	0	4	0	1	4	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	3	15335	IGKV2-40	1246	chr2:89629941:-	AC096579.7	7087	chr2:89157145:-	INCL_NON_REF_SPLICE	YES	6	284	1	0.98	0.0475	243.0152	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	243.0627	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--IGKJ4	3320	23	IGKV2-40	1300	chr2:89629887:-	IGKJ4	4319	chr2:89160430:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	52.6124	0.3645	GTEx_FI:{Thyroid=[count:2=pct:1.1],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3]},HGNC_GENEFAM,IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	52.9769	FALSE	7	34	0	4	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	4	12778	IGKV2-40	1245	chr2:89629942:-	AC096579.7	7119	chr2:89157113:-	INCL_NON_REF_SPLICE	YES	8	5258	1	0.71	0.0634	202.4942	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	202.5576	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	24	5616	IGKV2-40	1252	chr2:89629935:-	AC096579.7	7237	chr2:89156995:-	INCL_NON_REF_SPLICE	YES	0	18076	1	0.24	0.3803	88.9973	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	89.3776	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-344E13.3--UBBP4	165	278	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	5	2	0.99	1	2.6148	4.4055	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	7.0203	TRUE	23	13	0	54	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	34	218	IGKV2-40	1238	chr2:89629949:-	AC096579.7	7419	chr2:89156813:-	INCL_NON_REF_SPLICE	YES	37	5990	0.87	0.04	0.5388	3.4547	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.87	3.9935	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1D-16--IGKV2D-40	87	5	IGKV1D-16	1252	chr2:90139329:+	IGKV2D-40	4936	chr2:89891033:+	INCL_NON_REF_SPLICE	YES	1	23	0.99	0.8	1.3787	0.0792	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,IGKV1D-16->chr2:90139078-90139580:+,immunoglobulin_kappa_variable_1D-16,IGKV2D-40->chr2:89890601-89891307:+,immunoglobulin_kappa_variable_2D-40	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.99	1.4579	FALSE	0	0	0	1	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	71	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1251	0.3962	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.5213	TRUE	508	994	45	981	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	4	290	IGKV2-40	1217	chr2:89629970:-	AC096579.7	7396	chr2:89156836:-	INCL_NON_REF_SPLICE	YES	51	7854	0.85	0.04	0.0634	4.5957	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.85	4.6591	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	62	53	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	66	46	0.64	0.71	0.9825	0.8399	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.71	1.8224	TRUE	267	562	48	632	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	11	226	IGKV2-40	1241	chr2:89629946:-	AC096579.7	7416	chr2:89156816:-	INCL_NON_REF_SPLICE	YES	38	6078	0.86	0.04	0.1743	3.5814	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.86	3.7557	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	4	245	IGKV2-40	1249	chr2:89629938:-	AC096579.7	7419	chr2:89156813:-	INCL_NON_REF_SPLICE	YES	0	5990	1	0.04	0.0634	3.8825	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	3.9459	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC39A8--RP11-499E18.1	53	37	SLC39A8	9672	chr4:103225474:-	RP11-499E18.1	26100	chr4:103340145:-	ONLY_REF_SPLICE	YES	97	1	0.48	0.99	0.8399	0.5863	NEIGHBORS_OVERLAP:-:-:[12656],SLC39A8->chr4:103172198-103352415:-,solute_carrier_family_39_member_8,RP11-499E18.1->chr4:103339759-103371167:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.99	1.4262	FALSE	0	0	0	2	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-58C22.1--CTD-2336H13.2	41	1	RP11-58C22.1	2618	chr16:76669520:+	CTD-2336H13.2	5594	chr16:76770214:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6497	0.0158	GTEx_FI:{Testis=[count:22=pct:21.0]},RP11-58C22.1->chr16:76587314-76669520:+,CTD-2336H13.2->chr16:76770239-76962066:+	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6655	TRUE	5	3	0	6	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	39	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	214	5	0.17	0.9	0.618	0.0634	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.9	0.6814	TRUE	519	3926	326	965	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	40	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6339	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6339	TRUE	0	0	0	518	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	25	33	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	67	46	0.46	0.56	0.3962	0.523	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.56	0.9192	TRUE	267	562	48	632	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	5	109	IGKV2-40	1193	chr2:89629994:-	AC096579.7	7418	chr2:89156814:-	INCL_NON_REF_SPLICE	YES	332	5999	0.26	0.02	0.0792	1.7273	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.26	1.8065	TRUE	0	1	0	1	1	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1D-16--IGKV2D-40	29	0	IGKV1D-16	1032	chr2:90139109:+	IGKV2D-40	4470	chr2:89890567:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4596	0	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,IGKV1D-16->chr2:90139078-90139580:+,immunoglobulin_kappa_variable_1D-16,IGKV2D-40->chr2:89890601-89891307:+,immunoglobulin_kappa_variable_2D-40	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4596	FALSE	0	0	0	1	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC39A8--RP11-499E18.1	15	45	SLC39A8	9672	chr4:103225474:-	RP11-499E18.1	25294	chr4:103340951:-	ONLY_REF_SPLICE	YES	97	0	0.38	1	0.2377	0.7131	NEIGHBORS_OVERLAP:-:-:[12656],SLC39A8->chr4:103172198-103352415:-,solute_carrier_family_39_member_8,RP11-499E18.1->chr4:103339759-103371167:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.9508	FALSE	0	0	0	2	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1D-16--IGKV2D-40	21	3	IGKV1D-16	1291	chr2:90139368:+	IGKV2D-40	4975	chr2:89891072:+	INCL_NON_REF_SPLICE	YES	1	153	0.96	0.14	0.3328	0.0475	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,IGKV1D-16->chr2:90139078-90139580:+,immunoglobulin_kappa_variable_1D-16,IGKV2D-40->chr2:89890601-89891307:+,immunoglobulin_kappa_variable_2D-40	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.96	0.3803	FALSE	0	0	0	1	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	3	69	IGKV2-40	1095	chr2:89630092:-	AC096579.7	7103	chr2:89157129:-	INCL_NON_REF_SPLICE	YES	144	1108	0.33	0.06	0.0475	1.0934	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.33	1.1409	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	17	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2694	0.0158	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2852	FALSE	462	80	0	856	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKJ4--IGKV2-40	13	0	IGKJ4	1037	chr2:89160398:-	IGKV2-40	4038	chr2:89630186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.206	0	HGNC_GENEFAM,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4,IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.206	FALSE	0	0	0	1	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	33	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	67	46	0.36	0.45	0.0634	0.523	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.45	0.5864	TRUE	267	562	48	632	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC39A8--RP11-499E18.1	2	41	SLC39A8	9672	chr4:103225474:-	RP11-499E18.1	25729	chr4:103340516:-	ONLY_REF_SPLICE	YES	97	1	0.31	0.98	0.0317	0.6497	NEIGHBORS_OVERLAP:-:-:[12656],SLC39A8->chr4:103172198-103352415:-,solute_carrier_family_39_member_8,RP11-499E18.1->chr4:103339759-103371167:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.98	0.6814	FALSE	0	0	0	2	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	10	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1585	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1585	TRUE	46	1352	75	139	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1D-16--IGKV2D-40	9	3	IGKV1D-16	1284	chr2:90139361:+	IGKV2D-40	4968	chr2:89891065:+	INCL_NON_REF_SPLICE	YES	1	100	0.92	0.11	0.1426	0.0475	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,IGKV1D-16->chr2:90139078-90139580:+,immunoglobulin_kappa_variable_1D-16,IGKV2D-40->chr2:89890601-89891307:+,immunoglobulin_kappa_variable_2D-40	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.92	0.1901	FALSE	0	0	0	1	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	8	5	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1268	0.0792	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.206	TRUE	0	48	0	65	48	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1D-16--IGKV2D-40	8	5	IGKV1D-16	1258	chr2:90139335:+	IGKV2D-40	4943	chr2:89891040:+	INCL_NON_REF_SPLICE	YES	1	28	0.93	0.32	0.1268	0.0792	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,IGKV1D-16->chr2:90139078-90139580:+,immunoglobulin_kappa_variable_1D-16,IGKV2D-40->chr2:89890601-89891307:+,immunoglobulin_kappa_variable_2D-40	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.93	0.206	FALSE	0	0	0	1	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1D-16--IGKV2D-40	9	1	IGKV1D-16	1400	chr2:90139477:+	IGKV2D-40	5102	chr2:89891199:+	INCL_NON_REF_SPLICE	YES	0	130	1	0.07	0.1426	0.0158	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,IGKV1D-16->chr2:90139078-90139580:+,immunoglobulin_kappa_variable_1D-16,IGKV2D-40->chr2:89890601-89891307:+,immunoglobulin_kappa_variable_2D-40	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.1584	FALSE	0	0	0	1	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	9	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1426	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1426	TRUE	1	39	0	134	39	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--IGKJ4	3	23	IGKV2-40	1299	chr2:89629888:-	IGKJ4	4318	chr2:89160431:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0.3645	GTEx_FI:{Thyroid=[count:2=pct:1.1],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3]},HGNC_GENEFAM,IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.412	FALSE	7	34	0	4	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--IGKJ4	3	23	IGKV2-40	1302	chr2:89629885:-	IGKJ4	4320	chr2:89160429:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0.3645	GTEx_FI:{Thyroid=[count:2=pct:1.1],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3]},HGNC_GENEFAM,IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.412	FALSE	7	34	0	4	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KDM6A--RP11-342D14.1	7	4	KDM6A	3636	chrX:44833960:+	RP11-342D14.1	34657	chrX:45042498:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1109	0.0634	NEIGHBORS[70649],KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A,RP11-342D14.1->chrX:45042496-45193162:+	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1743	FALSE	0	0	0	1	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	7	3	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.1109	0.0475	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1584	TRUE	0	1	0	84	1	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1109	0.0317	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1426	FALSE	499	1288	110	792	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	7	1	EEF2	8854	chr19:3977458:-	RPS28	13630	chr19:8386413:+	INCL_NON_REF_SPLICE	YES	4051	0	0	1	0.1109	0.0158	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1267	TRUE	0	0	0	100	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C10orf112--PLXDC2	7	0	C10orf112	32754	chr10:20079115:+	PLXDC2	37923	chr10:20290704:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1109	0	NEIGHBORS[25838],C10orf112->chr10:19492779-20079330:+,PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1109	FALSE	73	74	3	10	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1D-16--IGKV2D-40	5	4	IGKV1D-16	1276	chr2:90139353:+	IGKV2D-40	4960	chr2:89891057:+	INCL_NON_REF_SPLICE	YES	1	66	0.9	0.12	0.0792	0.0634	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,IGKV1D-16->chr2:90139078-90139580:+,immunoglobulin_kappa_variable_1D-16,IGKV2D-40->chr2:89890601-89891307:+,immunoglobulin_kappa_variable_2D-40	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.9	0.1426	FALSE	0	0	0	1	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	5	2	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	4416	0	0	1	0.0792	0.0317	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1109	TRUE	0	0	0	100	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	5	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0792	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0792	TRUE	0	0	0	81	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1D-16--IGKV2D-40	5	0	IGKV1D-16	1040	chr2:90139117:+	IGKV2D-40	4478	chr2:89890575:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0792	0	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,IGKV1D-16->chr2:90139078-90139580:+,immunoglobulin_kappa_variable_1D-16,IGKV2D-40->chr2:89890601-89891307:+,immunoglobulin_kappa_variable_2D-40	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0792	FALSE	0	0	0	1	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1D-16--IGKV2D-40	4	4	IGKV1D-16	1285	chr2:90139362:+	IGKV2D-40	4952	chr2:89891049:+	INCL_NON_REF_SPLICE	YES	1	32	0.89	0.2	0.0634	0.0634	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,IGKV1D-16->chr2:90139078-90139580:+,immunoglobulin_kappa_variable_1D-16,IGKV2D-40->chr2:89890601-89891307:+,immunoglobulin_kappa_variable_2D-40	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.89	0.1268	FALSE	0	0	0	1	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0.0634	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1268	FALSE	499	1288	110	792	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	3	7	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0475	0.1109	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1584	TRUE	0	35	0	55	35	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	7	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0.1109	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1584	FALSE	499	1288	110	792	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWOX--VAT1L	4	3	WWOX	10605	chr16:78198186:+	VAT1L	42429	chr16:78005747:+	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0634	0.0475	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.1109	TRUE	0	0	0	6	0	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1D-16--IGKV2D-40	3	5	IGKV1D-16	1263	chr2:90139340:+	IGKV2D-40	4947	chr2:89891044:+	INCL_NON_REF_SPLICE	YES	1	33	0.89	0.2	0.0475	0.0792	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,IGKV1D-16->chr2:90139078-90139580:+,immunoglobulin_kappa_variable_1D-16,IGKV2D-40->chr2:89890601-89891307:+,immunoglobulin_kappa_variable_2D-40	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.89	0.1267	FALSE	0	0	0	1	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0634	0.0158	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0792	FALSE	499	1288	110	792	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--AC096579.7	4	0	IGKV2-40	1043	chr2:89630144:-	AC096579.7	7322	chr2:89156910:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,AC096579.7->chr2:89130700-89165653:-	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0634	TRUE	0	1	0	1	1	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0475	0.0475	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.095	FALSE	467	2173	244	435	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0.0317	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0792	FALSE	499	1288	110	792	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0.0158	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0633	FALSE	462	80	0	856	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRSF3--SND1	3	1	SRSF3	1114	chr6:36562258:+	SND1	36943	chr7:127631000:+	ONLY_REF_SPLICE	YES	177	484	0.02	0.01	0.0475	0.0158	SRSF3->Oncogene{Bushman},chr6:36562145-36573377:+,serine/arginine-rich_splicing_factor_3,SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0633	FALSE	0	0	0	1	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	3	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0475	FALSE	0	0	0	189	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0317	0.0475	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0792	FALSE	407	2205	196	549	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0317	0.0475	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0792	FALSE	515	4851	409	746	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNN2--ZNF580	2	0	CNN2	4331	chr19:1032695:+	ZNF580	14858	chr19:56153863:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	CNN2->calponin_2,chr19:1026298-1039068:+,ZNF580->chr19:56146382-56154835:+,zinc_finger_protein_580	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP1-34H18.1--RP11-781A6.1	2	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	94	160	11	37	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-245P10.4--NVL	2	0	RP11-245P10.4	1098	chr1:228595179:+	NVL	28432	chr1:224455835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	RP11-245P10.4->chr1:228595082-228597395:+,NVL->chr1:224415036-224518089:-,nuclear_VCP-like	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG16--PPP3CC	2	0	SNHG16	1092	chr17:74553939:+	PPP3CC	12857	chr8:22332467:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,PPP3CC->chr8:22298332-22398652:+,protein_phosphatase_3_catalytic_subunit_gamma	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	FALSE	272	151	14	158	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DERL3--UBL5	1	1	DERL3	1565	chr22:24180751:-	UBL5	9327	chr19:9939268:+	ONLY_REF_SPLICE	NO	472	1007	0	0	0.0158	0.0158	DERL3->chr22:24176690-24181315:-,derlin_3,UBL5->chr19:9938568-9940791:+,ubiquitin_like_5	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000576
KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--LMNB2	1	1	OAZ1	1259	chr19:2269743:+	LMNB2	9331	chr19:2444538:-	ONLY_REF_SPLICE	YES	2953	98	0	0.02	0.0158	0.0158	OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,LMNB2->chr19:2427636-2456994:-,lamin_B2	KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000576
SNU213_PANCREAS	TIMM23B--LINC00843	126	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2486	0.2973	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU213_PANCREAS	1	1	1.5459	TRUE	508	994	45	981	0	FALSE	ACH-000266
SNU213_PANCREAS	TIMM23--RP11-464F9.1	76	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	154	1	0.34	0.99	0.7531	0.0198	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU213_PANCREAS	0.34	0.99	0.7729	TRUE	519	3926	326	965	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-TA--MT-TC	52	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5153	0.0396	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU213_PANCREAS	1	1	0.5549	FALSE	462	80	0	856	0	FALSE	ACH-000266
SNU213_PANCREAS	RP11-114H23.1--RP11-114H23.2	34	14	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	3	0	0.94	1	0.3369	0.1387	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU213_PANCREAS	0.94	1	0.4756	FALSE	81	155	12	160	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-ND6--MT-TE	34	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3369	0.0099	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU213_PANCREAS	1	1	0.3468	FALSE	499	1288	110	792	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-CO3--MT-ATP6	14	49	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	6	0.94	0.91	0.1387	0.4856	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU213_PANCREAS	0.91	0.94	0.6243	FALSE	189	492	56	216	0	FALSE	ACH-000266
SNU213_PANCREAS	OR51S1--TP53I11	22	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.218	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU213_PANCREAS	1	1	0.218	TRUE	402	216	10	229	0	FALSE	ACH-000266
SNU213_PANCREAS	NRIP1--AF127936.7	19	5	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.67	1	0.1883	0.0495	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU213_PANCREAS	0.67	1	0.2378	FALSE	292	1546	117	613	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-CO3--MT-ATP6	5	56	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	13	0	0.82	1	0.0495	0.5549	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU213_PANCREAS	0.82	1	0.6044	FALSE	189	492	56	216	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-CO3--MT-ATP6	6	50	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	3	47	0.95	0.54	0.0595	0.4955	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU213_PANCREAS	0.54	0.95	0.555	FALSE	189	492	56	216	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-CO3--MT-ATP6	5	48	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	2	28	0.96	0.65	0.0495	0.4757	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU213_PANCREAS	0.65	0.96	0.5252	FALSE	189	492	56	216	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-ND6--MT-TE	15	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1486	0.0099	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU213_PANCREAS	1	1	0.1585	FALSE	499	1288	110	792	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-CO3--MT-ATP6	4	44	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	5	0.98	0.91	0.0396	0.436	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU213_PANCREAS	0.91	0.98	0.4756	FALSE	189	492	56	216	0	FALSE	ACH-000266
SNU213_PANCREAS	RP11-96H19.1--RP11-446N19.1	12	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.91	0.95	0.1189	0.0793	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU213_PANCREAS	0.91	0.95	0.1982	FALSE	515	4851	409	746	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-ND6--MT-TE	8	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.83	1	0.0793	0.1586	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU213_PANCREAS	0.83	1	0.2379	FALSE	499	1288	110	792	0	FALSE	ACH-000266
SNU213_PANCREAS	RP11-96H19.1--RP11-446N19.1	7	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.9	1	0.0694	0.109	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU213_PANCREAS	0.9	1	0.1784	FALSE	407	2205	196	549	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-CO3--MT-ATP6	3	25	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.82	0.0297	0.2477	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU213_PANCREAS	0.82	1	0.2774	FALSE	189	492	56	216	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-CO3--MT-ATP6	8	5	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	4	0	0.76	1	0.0793	0.0495	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU213_PANCREAS	0.76	1	0.1288	FALSE	189	492	56	216	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-ND6--MT-TE	4	20	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.83	1	0.0396	0.1982	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU213_PANCREAS	0.83	1	0.2378	FALSE	499	1288	110	792	0	FALSE	ACH-000266
SNU213_PANCREAS	NRIP1--AF127936.7	7	7	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	47	0	0.23	1	0.0694	0.0694	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU213_PANCREAS	0.23	1	0.1388	FALSE	125	705	46	456	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-ND6--MT-TE	5	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0.109	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU213_PANCREAS	1	1	0.1585	FALSE	499	1288	110	792	0	FALSE	ACH-000266
SNU213_PANCREAS	RP11-123O10.4--GRIP1	7	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0694	0.0099	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU213_PANCREAS	1	1	0.0793	FALSE	416	2512	207	587	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0694	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU213_PANCREAS	1	1	0.0694	FALSE	462	80	0	856	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-CO3--MT-ATP6	6	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.58	1	0.0595	0.0099	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU213_PANCREAS	0.58	1	0.0694	FALSE	189	492	56	216	0	FALSE	ACH-000266
SNU213_PANCREAS	NRIP1--AF127936.7	4	9	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	57	0	0.19	1	0.0396	0.0892	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU213_PANCREAS	0.19	1	0.1288	FALSE	164	806	69	479	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-CO3--MT-ATP6	3	12	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	4	1	0.79	0.94	0.0297	0.1189	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU213_PANCREAS	0.79	0.94	0.1486	FALSE	189	492	56	216	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-TA--MT-TC	5	4	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0.0396	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU213_PANCREAS	1	1	0.0891	FALSE	462	80	0	856	0	FALSE	ACH-000266
SNU213_PANCREAS	PCAT1--RP11-382A18.2	6	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0595	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	SNU213_PANCREAS	1	1	0.0595	TRUE	4	84	1	46	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-TA--MT-TC	5	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0.0297	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU213_PANCREAS	1	1	0.0792	FALSE	462	80	0	856	0	FALSE	ACH-000266
SNU213_PANCREAS	RP11-120D5.1--MID1	5	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	31	0.67	0.21	0.0495	0.0297	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU213_PANCREAS	0.21	0.67	0.0792	FALSE	16	356	14	466	0	FALSE	ACH-000266
SNU213_PANCREAS	RAD51B--GPHN	5	2	RAD51B	11638	chr14:68353921:+	GPHN	73887	chr14:67648137:+	ONLY_REF_SPLICE	YES	17	18	0.29	0.28	0.0495	0.0198	RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	SNU213_PANCREAS	0.28	0.29	0.0693	TRUE	0	0	0	1	0	TRUE	ACH-000266
SNU213_PANCREAS	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU213_PANCREAS	1	1	0.0495	FALSE	499	1288	110	792	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-TA--MT-TC	3	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0.0495	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU213_PANCREAS	1	1	0.0792	FALSE	462	80	0	856	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU213_PANCREAS	1	1	0.0396	FALSE	189	492	56	216	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU213_PANCREAS	1	1	0.0396	FALSE	499	1288	110	792	0	FALSE	ACH-000266
SNU213_PANCREAS	RP11-96H19.1--RP11-446N19.1	2	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0198	0.0793	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU213_PANCREAS	0.91	1	0.0991	FALSE	467	2173	244	435	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0.0297	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU213_PANCREAS	1	1	0.0594	FALSE	462	80	0	856	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0.0297	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU213_PANCREAS	1	1	0.0594	FALSE	462	80	0	856	0	FALSE	ACH-000266
SNU213_PANCREAS	ACTN4--MT-CO1	3	2	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	1100	26762	0	0	0.0297	0.0198	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU213_PANCREAS	0	0	0.0495	FALSE	0	0	0	30	0	FALSE	ACH-000266
SNU213_PANCREAS	RP11-114H23.1--RP11-114H23.2	2	6	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	3	8	0.73	0.5	0.0198	0.0595	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU213_PANCREAS	0.5	0.73	0.0793	FALSE	81	155	12	160	0	FALSE	ACH-000266
SNU213_PANCREAS	GALNT9--NOC4L	3	0	GALNT9	2606	chr12:132862836:-	NOC4L	28001	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	GTEx_FI:{Brain=[count:36=pct:5.5]},GTEx_v2:{count=51;pct=0.59%;dist=Brain_-_Cerebellum=14,Brain_-_Cerebellar_Hemisphere=12,Brain_-_Cortex=8,Brain_-_Frontal_Cortex_(BA9)=6,Brain_-_Hippocampus=4,Brain_-_Anterior_cingulate_cortex_(BA24)=4,Brain_-_Hypothalamus=1,Brain_-_Substantia_nigra=1,Brain_-_Amygdala=1},LOCAL_INVERSION:-:+:[43911],GALNT9->chr12:132680924-132905935:-,polypeptide_N-acetylgalactosaminyltransferase_9,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	SNU213_PANCREAS	1	1	0.0297	TRUE	13	8	0	3	0	FALSE	ACH-000266
SNU213_PANCREAS	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU213_PANCREAS	1	1	0.0297	FALSE	189	492	56	216	0	FALSE	ACH-000266
SNU213_PANCREAS	CLIC1--RPL7	2	1	CLIC1	4985	chr6:31701613:-	RPL7	14663	chr8:74203896:-	ONLY_REF_SPLICE	YES	1856	3663	0	0	0.0198	0.0099	CLIC1->chloride_intracellular_channel_1,chr6:31698358-31707540:-,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	SNU213_PANCREAS	0	0	0.0297	FALSE	0	0	0	12	0	FALSE	ACH-000266
SNU213_PANCREAS	RP11-155G15.2--RP11-1E3.1	2	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0.0099	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	SNU213_PANCREAS	1	1	0.0297	FALSE	46	201	11	112	0	FALSE	ACH-000266
SNU213_PANCREAS	ARHGEF28--BTF3	2	0	ARHGEF28	3185	chr5:72980709:+	BTF3	56982	chr5:72798313:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},ARHGEF28->Rho_guanine_nucleotide_exchange_factor_28,chr5:72921983-73237818:+,BTF3->basic_transcription_factor_3,chr5:72794233-72801460:+	SNU213_PANCREAS	1	1	0.0198	TRUE	0	5	0	3	4	TRUE	ACH-000266
SNU213_PANCREAS	BZW2--PABPC4	2	0	BZW2	12427	chr7:16729531:+	PABPC4	24727	chr1:40037021:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	BZW2->basic_leucine_zipper_and_W2_domains_2,chr7:16685756-16746148:+,PABPC4->chr1:40026488-40042462:-,poly(A)_binding_protein_cytoplasmic_4	SNU213_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000266
SNU213_PANCREAS	EIF3H--MAL2	2	0	EIF3H	3765	chr8:117767905:-	MAL2	26840	chr8:120233827:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,MAL2->chr8:120177273-120257913:+,mal,_T-cell_differentiation_protein_2_(gene/pseudogene)	SNU213_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000266
SNU213_PANCREAS	F2RL1--MYO1C	2	0	F2RL1	1332	chr5:76115089:+	MYO1C	13601	chr17:1387597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	F2RL1->F2R_like_trypsin_receptor_1,chr5:76114758-76131140:+,MYO1C->chr17:1367392-1396106:-,myosin_IC	SNU213_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000266
SNU213_PANCREAS	HPS3--RAE1	2	0	HPS3	1357	chr3:148847727:+	RAE1	35495	chr20:55948531:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	HPS3->HPS3,_biogenesis_of_lysosomal_organelles_complex_2_subunit_1,chr3:148847371-148891519:+,RAE1->chr20:55926066-55954267:+,ribonucleic_acid_export_1	SNU213_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000266
SNU213_PANCREAS	MKKS--XRN2	2	0	MKKS	1115	chr20:10414756:-	XRN2	26481	chr20:21321359:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	MKKS->McKusick-Kaufman_syndrome,chr20:10381657-10414870:-,XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+	SNU213_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000266
SNU213_PANCREAS	RBM6--VPS41	2	0	RBM6	3185	chr3:50000118:+	VPS41	41366	chr7:38869928:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,VPS41->VPS41,_HOPS_complex_subunit,chr7:38762563-38971994:-	SNU213_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000266
SNU213_PANCREAS	RCC1--GNB1	2	0	RCC1	2175	chr1:28834672:+	GNB1	21015	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	SNU213_PANCREAS	1	1	0.0198	TRUE	0	10	0	7	3	TRUE	ACH-000266
SNU213_PANCREAS	THOP1--RBM14	2	0	THOP1	8518	chr19:2805174:+	RBM14	27427	chr11:66393932:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	THOP1->chr19:2785458-2813599:+,thimet_oligopeptidase_1,RBM14->RNA_binding_motif_protein_14,chr11:66384053-66394818:+	SNU213_PANCREAS	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000266
SNU213_PANCREAS	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	57	8	0.07	0.33	0.0099	0.0297	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU213_PANCREAS	0.07	0.33	0.0396	FALSE	8	57	1	47	0	FALSE	ACH-000266
SNU213_PANCREAS	ACACA--DUSP14	1	1	ACACA	1558	chr17:35766352:-	DUSP14	82791	chr17:35870779:+	ONLY_REF_SPLICE	NO	5	12	0.29	0.14	0.0099	0.0099	LOCAL_INVERSION:-:+:[83028],ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,DUSP14->chr17:35849937-35873603:+,dual_specificity_phosphatase_14	SNU213_PANCREAS	0.14	0.29	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000266
SNU213_PANCREAS	PIGF--PKD2	1	1	PIGF	6652	chr2:46819614:-	PKD2	29204	chr4:88996610:+	ONLY_REF_SPLICE	YES	43	28	0.04	0.07	0.0099	0.0099	PIGF->chr2:46808076-46844258:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_F,PKD2->chr4:88928820-88998929:+,polycystin_2,_transient_receptor_potential_cation_channel	SNU213_PANCREAS	0.04	0.07	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000266
KMRC2_KIDNEY	MT-TA--MT-TC	87	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1934	0.0686	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMRC2_KIDNEY	1	1	1.262	FALSE	462	80	0	856	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-TA--MT-TN	85	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1659	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC2_KIDNEY	1	1	1.1659	FALSE	369	2501	205	193	0	FALSE	ACH-000709
KMRC2_KIDNEY	TIMM23B--LINC00843	52	10	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7133	0.1372	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMRC2_KIDNEY	1	1	0.8505	TRUE	508	994	45	981	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND6--MT-TE	44	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6035	0.0137	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC2_KIDNEY	1	1	0.6172	FALSE	499	1288	110	792	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-TA--MT-TN	19	64	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2606	0.8779	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC2_KIDNEY	1	1	1.1385	FALSE	369	2501	205	193	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND4--MT-ND4L	3	124	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	8	0	0.94	1	0.0412	1.7009	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMRC2_KIDNEY	0.94	1	1.7421	FALSE	344	826	44	306	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND4--MT-ND4L	7	104	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	0	0.96	1	0.096	1.4266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMRC2_KIDNEY	0.96	1	1.5226	FALSE	344	821	44	306	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-RNR2	30	5	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	17265	18266	0	0	0.4115	0.0686	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	0	0.4801	FALSE	63	17	1	58	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND4--MT-ND4L	3	102	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	14	0	0.88	1	0.0412	1.3991	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMRC2_KIDNEY	0.88	1	1.4403	FALSE	344	826	44	306	0	FALSE	ACH-000709
KMRC2_KIDNEY	TIMM23--RP11-464F9.1	27	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3704	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KMRC2_KIDNEY	1	1	0.3704	TRUE	519	3926	326	965	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND4--MT-ND4L	18	34	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	14201	0	0	1	0.2469	0.4664	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMRC2_KIDNEY	0	1	0.7133	FALSE	328	800	43	304	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND6--MT-TE	23	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3155	0.0686	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC2_KIDNEY	1	1	0.3841	FALSE	499	1288	110	792	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-TA--MT-TN	10	51	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1372	0.6996	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC2_KIDNEY	1	1	0.8368	FALSE	369	2501	205	193	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-RNR2	21	1	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	14834	0	0	1	0.2881	0.0137	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	1	0.3018	FALSE	63	17	1	58	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-RNR2	19	4	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	16690	17847	0	0	0.2606	0.0549	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	0	0.3155	FALSE	63	17	1	58	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-CO1--MT-RNR2	16	11	MT-CO1	1653	chrM:6556:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	32699	0	0	1	0.2195	0.1509	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	1	0.3704	FALSE	44	51	6	21	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-TA--MT-TN	13	20	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1783	0.2743	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC2_KIDNEY	1	1	0.4526	FALSE	369	2501	205	193	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND6--MT-TE	17	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2332	0.0137	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC2_KIDNEY	1	1	0.2469	FALSE	499	1288	110	792	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-TA--MT-TN	9	33	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1235	0.4527	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC2_KIDNEY	1	1	0.5762	FALSE	369	2501	205	193	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-CO1	16	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	15287	32491	0	0	0.2195	0.0137	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC2_KIDNEY	0	0	0.2332	FALSE	183	104	9	328	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND4--MT-ND4L	3	50	MT-ND4	1779	chrM:11538:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	7823	0	0.01	1	0.0412	0.6858	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMRC2_KIDNEY	0.01	1	0.727	FALSE	344	827	44	306	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-TA--MT-TC	15	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2058	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMRC2_KIDNEY	1	1	0.2058	FALSE	462	80	0	856	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND4--MT-ND4L	9	19	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1425	0	0.02	1	0.1235	0.2606	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMRC2_KIDNEY	0.02	1	0.3841	FALSE	344	827	44	306	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND4--MT-ND4L	12	7	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	101	0	0.16	1	0.1646	0.096	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMRC2_KIDNEY	0.16	1	0.2606	FALSE	344	827	44	306	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-TA--MT-TN	3	40	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0.5487	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC2_KIDNEY	1	1	0.5899	FALSE	369	2501	205	193	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND4--MT-ND4L	3	34	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	30	0	0.55	1	0.0412	0.4664	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMRC2_KIDNEY	0.55	1	0.5076	FALSE	344	826	44	306	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-CO1	11	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	15086	31709	0	0	0.1509	0.0137	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC2_KIDNEY	0	0	0.1646	FALSE	183	104	9	328	0	FALSE	ACH-000709
KMRC2_KIDNEY	HSP90AB1--MT-RNR2	10	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1811	0	0.01	1	0.1372	0.0412	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0.01	1	0.1784	FALSE	13	9	0	364	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-CO1--MT-RNR2	8	10	MT-CO1	1635	chrM:6538:+	MT-RNR2	5554	chrM:1682:+	INCL_NON_REF_SPLICE	YES	31248	0	0	1	0.1097	0.1372	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	1	0.2469	FALSE	44	51	6	21	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-TA--MT-TN	5	20	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0.2743	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC2_KIDNEY	1	1	0.3429	FALSE	369	2501	205	193	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-CO1--MT-RNR2	5	19	MT-CO1	2223	chrM:7126:+	MT-RNR2	5562	chrM:1690:+	INCL_NON_REF_SPLICE	YES	24152	0	0	1	0.0686	0.2606	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	1	0.3292	FALSE	44	51	6	21	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-TA--MT-TC	8	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1097	0.0823	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMRC2_KIDNEY	1	1	0.192	FALSE	462	80	0	856	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-CO2	9	1	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	81	3	0.11	0.77	0.1235	0.0137	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KMRC2_KIDNEY	0.11	0.77	0.1372	FALSE	59	21	0	114	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-CO2	9	0	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1235	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KMRC2_KIDNEY	1	1	0.1235	FALSE	59	21	0	114	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND5--MT-ND6	8	4	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	2	3841	0.86	0	0.1097	0.0549	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	KMRC2_KIDNEY	0	0.86	0.1646	FALSE	26	124	4	93	0	FALSE	ACH-000709
KMRC2_KIDNEY	NRIP1--AF127936.7	9	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1235	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMRC2_KIDNEY	1	1	0.1235	FALSE	292	1546	117	613	0	FALSE	ACH-000709
KMRC2_KIDNEY	HSP90AB1--MT-RNR2	8	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1818	0	0.01	1	0.1097	0.0412	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0.01	1	0.1509	FALSE	13	9	0	364	0	FALSE	ACH-000709
KMRC2_KIDNEY	ALDOA--MT-CO3	8	2	ALDOA	11901	chr16:30081673:+	MT-CO3	15101	chrM:9301:+	INCL_NON_REF_SPLICE	NO	0	7	1	0.59	0.1097	0.0274	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	KMRC2_KIDNEY	0.59	1	0.1371	FALSE	0	0	0	3	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-CO1--MT-RNR2	7	6	MT-CO1	1642	chrM:6545:+	MT-RNR2	6082	chrM:2210:+	INCL_NON_REF_SPLICE	YES	31935	17780	0	0	0.096	0.0823	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	0	0.1783	FALSE	44	51	6	21	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND6--MT-TE	7	6	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.096	0.0823	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC2_KIDNEY	1	1	0.1783	FALSE	499	1288	110	792	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-RNR2	8	1	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	15243	18233	0	0	0.1097	0.0137	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	0	0.1234	FALSE	63	17	1	58	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-CO1--MT-RNR2	3	21	MT-CO1	2537	chrM:7440:+	MT-RNR2	5550	chrM:1678:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0.2881	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	1	1	0.3293	FALSE	44	51	6	21	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-CO2	8	0	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1097	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KMRC2_KIDNEY	1	1	0.1097	FALSE	59	21	0	114	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-RNR2	6	8	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	17265	0	0	1	0.0823	0.1097	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	1	0.192	FALSE	63	17	1	58	0	FALSE	ACH-000709
KMRC2_KIDNEY	RP11-96H19.1--RP11-446N19.1	7	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.096	0.0549	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMRC2_KIDNEY	1	1	0.1509	FALSE	515	4851	409	746	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-CO1--MT-RNR2	7	3	MT-CO1	1536	chrM:6439:+	MT-RNR2	6107	chrM:2235:+	INCL_NON_REF_SPLICE	NO	29474	18300	0	0	0.096	0.0412	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	0	0.1372	FALSE	44	51	6	21	0	FALSE	ACH-000709
KMRC2_KIDNEY	NRIP1--AF127936.7	7	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.31	1	0.096	0.0274	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMRC2_KIDNEY	0.31	1	0.1234	FALSE	164	806	69	479	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-RNR2	4	13	MT-ATP6	1303	chrM:8829:+	MT-RNR2	4728	chrM:1717:+	INCL_NON_REF_SPLICE	YES	22401	0	0	1	0.0549	0.1783	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	1	0.2332	FALSE	63	17	1	58	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-RNR2	4	13	MT-ATP6	1394	chrM:8920:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	NO	18048	0	0	1	0.0549	0.1783	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	1	0.2332	FALSE	63	17	1	58	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND6--MT-TE	5	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0.1097	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC2_KIDNEY	1	1	0.1783	FALSE	499	1288	110	792	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-TA--MT-TN	7	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.096	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC2_KIDNEY	1	1	0.096	FALSE	369	2501	205	193	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-CO1--MT-RNR2	3	15	MT-CO1	1976	chrM:6879:+	MT-RNR2	5563	chrM:1691:+	INCL_NON_REF_SPLICE	YES	32958	0	0	1	0.0412	0.2058	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	1	0.247	FALSE	44	51	6	21	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-TA--MT-TC	5	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0.096	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMRC2_KIDNEY	1	1	0.1646	FALSE	462	80	0	856	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-CO2	6	2	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	84	3	0.09	0.73	0.0823	0.0274	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KMRC2_KIDNEY	0.09	0.73	0.1097	FALSE	59	21	0	114	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-RNR2	6	2	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	16681	17925	0	0	0.0823	0.0274	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	0	0.1097	FALSE	63	17	1	58	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-RNR2	5	4	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	15401	0	0	1	0.0686	0.0549	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	1	0.1235	FALSE	63	17	1	58	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0823	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC2_KIDNEY	1	1	0.0823	FALSE	499	1288	110	792	0	FALSE	ACH-000709
KMRC2_KIDNEY	INIP--KCNU1	5	3	INIP	2331	chr9:115478741:-	KCNU1	32435	chr8:36763226:+	ONLY_REF_SPLICE	YES	33	0	0.2	1	0.0686	0.0412	INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-,KCNU1->chr8:36641842-36793646:+,potassium_calcium-activated_channel_subfamily_U_member_1	KMRC2_KIDNEY	0.2	1	0.1098	TRUE	0	0	0	1	0	TRUE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-CO1	3	10	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4616	32852	0	0	0.0412	0.1372	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC2_KIDNEY	0	0	0.1784	FALSE	183	104	9	328	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-CO1	5	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	17835	32219	0	0	0.0686	0.0274	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC2_KIDNEY	0	0	0.096	FALSE	183	104	9	328	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-RNR2	5	2	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	16681	17847	0	0	0.0686	0.0274	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	0	0.096	FALSE	63	17	1	58	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-RNR2	5	2	MT-ATP6	1143	chrM:8669:+	MT-RNR2	5305	chrM:2294:+	INCL_NON_REF_SPLICE	YES	16527	18804	0	0	0.0686	0.0274	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	0	0.096	FALSE	63	17	1	58	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-CO1	5	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	15242	32219	0	0	0.0686	0.0137	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC2_KIDNEY	0	0	0.0823	FALSE	183	104	9	328	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	13385	0	0	1	0.0686	0.0137	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	1	0.0823	FALSE	63	17	1	58	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1172	chrM:8698:+	MT-RNR2	5313	chrM:2302:+	INCL_NON_REF_SPLICE	YES	18416	19677	0	0	0.0686	0.0137	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	0	0.0823	FALSE	63	17	1	58	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	13385	18640	0	0	0.0686	0.0137	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	0	0.0823	FALSE	63	17	1	58	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-CO1--MT-RNR2	3	9	MT-CO1	1617	chrM:6520:+	MT-RNR2	5563	chrM:1691:+	INCL_NON_REF_SPLICE	YES	29083	0	0	1	0.0412	0.1235	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	1	0.1647	FALSE	44	51	6	21	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-CO1--MT-RNR2	3	9	MT-CO1	1603	chrM:6506:+	MT-RNR2	5550	chrM:1678:+	INCL_NON_REF_SPLICE	YES	28364	0	0	1	0.0412	0.1235	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	1	0.1647	FALSE	44	51	6	21	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-CO1--MT-RNR2	3	9	MT-CO1	1631	chrM:6534:+	MT-RNR2	5579	chrM:1707:+	INCL_NON_REF_SPLICE	YES	30582	0	0	1	0.0412	0.1235	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	1	0.1647	FALSE	44	51	6	21	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND6--MT-TE	4	5	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0.0686	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC2_KIDNEY	1	1	0.1235	FALSE	499	1288	110	792	0	FALSE	ACH-000709
KMRC2_KIDNEY	MTATP6P1--MT-ND1	5	1	MTATP6P1	1126	chr1:569201:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	2207	7761	0	0	0.0686	0.0137	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	KMRC2_KIDNEY	0	0	0.0823	FALSE	16	0	0	13	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-CO1--MT-RNR2	3	8	MT-CO1	1980	chrM:6883:+	MT-RNR2	6135	chrM:2263:+	INCL_NON_REF_SPLICE	YES	32506	18086	0	0	0.0412	0.1097	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	0	0.1509	FALSE	44	51	6	21	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-TA--MT-TN	5	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC2_KIDNEY	1	1	0.0686	FALSE	369	2501	205	193	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-TA--MT-TN	5	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC2_KIDNEY	1	1	0.0686	FALSE	369	2501	205	193	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-CO1	4	2	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	14164	25888	0	0	0.0549	0.0274	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC2_KIDNEY	0	0	0.0823	FALSE	183	104	9	328	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1121	chrM:8647:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	YES	15292	17823	0	0	0.0549	0.0137	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	0	0.0686	FALSE	63	17	1	58	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND6--MT-TE	3	5	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0412	0.0686	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC2_KIDNEY	0.89	1	0.1098	FALSE	499	1288	110	792	0	FALSE	ACH-000709
KMRC2_KIDNEY	MTATP6P1--MT-ND1	4	1	MTATP6P1	1111	chr1:569186:+	MT-ND1	4880	chrM:3505:+	INCL_NON_REF_SPLICE	YES	1776	7085	0	0	0.0549	0.0137	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	KMRC2_KIDNEY	0	0	0.0686	FALSE	16	0	0	13	0	FALSE	ACH-000709
KMRC2_KIDNEY	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	7	0.83	0.42	0.0549	0.0137	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KMRC2_KIDNEY	0.42	0.83	0.0686	FALSE	16	356	14	466	0	FALSE	ACH-000709
KMRC2_KIDNEY	CTD-2337A12.1--CAST	4	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0549	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	KMRC2_KIDNEY	1	1	0.0549	TRUE	347	1186	183	220	0	FALSE	ACH-000709
KMRC2_KIDNEY	CTD-3116E22.6--ZNF274	4	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	KMRC2_KIDNEY	1	1	0.0549	TRUE	0	0	0	13	0	TRUE	ACH-000709
KMRC2_KIDNEY	HLA-A--MT-ND1	4	0	HLA-A	2742	chr6:29910778:+	MT-ND1	8756	chrM:3437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	HLA-A->chr6:29909037-29913661:+,major_histocompatibility_complex,_class_I,_A,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	KMRC2_KIDNEY	1	1	0.0549	FALSE	1	0	0	11	0	FALSE	ACH-000709
KMRC2_KIDNEY	INIP--KCNU1	3	4	INIP	4504	chr9:115456434:-	KCNU1	32428	chr8:36763219:+	INCL_NON_REF_SPLICE	YES	9	0	0.44	1	0.0412	0.0549	INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-,KCNU1->chr8:36641842-36793646:+,potassium_calcium-activated_channel_subfamily_U_member_1	KMRC2_KIDNEY	0.44	1	0.0961	TRUE	0	0	0	1	0	TRUE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-CO1	4	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC2_KIDNEY	1	1	0.0549	FALSE	183	104	9	328	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-CO2	3	4	MT-ATP6	1555	chrM:9081:+	MT-CO2	4955	chrM:7859:+	INCL_NON_REF_SPLICE	YES	3	5	0.7	0.58	0.0412	0.0549	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	KMRC2_KIDNEY	0.58	0.7	0.0961	FALSE	59	21	0	114	0	FALSE	ACH-000709
KMRC2_KIDNEY	ALDOA--MT-CO3	3	1	ALDOA	8825	chr16:30078597:+	MT-CO3	15052	chrM:9252:+	INCL_NON_REF_SPLICE	YES	3026	0	0	1	0.0412	0.0137	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	KMRC2_KIDNEY	0	1	0.0549	FALSE	0	0	0	5	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1112	chrM:8638:+	MT-CO1	5325	chrM:6547:+	INCL_NON_REF_SPLICE	YES	14758	32364	0	0	0.0412	0.0137	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC2_KIDNEY	0	0	0.0549	FALSE	183	104	9	328	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1125	chrM:8651:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	15270	17847	0	0	0.0412	0.0137	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC2_KIDNEY	0	0	0.0549	FALSE	63	17	1	58	0	FALSE	ACH-000709
KMRC2_KIDNEY	MTATP6P1--MT-ND1	3	1	MTATP6P1	1400	chr1:569475:+	MT-ND1	5195	chrM:3820:+	INCL_NON_REF_SPLICE	YES	4000	9926	0	0	0.0412	0.0137	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	KMRC2_KIDNEY	0	0	0.0549	FALSE	16	0	0	13	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1252	chrM:8778:+	MT-CO1	6001	chrM:7223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC2_KIDNEY	1	1	0.0412	FALSE	183	103	9	328	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC2_KIDNEY	1	1	0.0412	FALSE	499	1288	110	792	0	FALSE	ACH-000709
KMRC2_KIDNEY	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC2_KIDNEY	1	1	0.0412	FALSE	369	2501	205	193	0	FALSE	ACH-000709
KMRC2_KIDNEY	PFKL--MT-ND4L	3	0	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMRC2_KIDNEY	1	1	0.0412	FALSE	0	0	0	33	0	FALSE	ACH-000709
KMRC2_KIDNEY	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0274	0.0549	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMRC2_KIDNEY	0.86	1	0.0823	FALSE	467	2173	244	435	0	FALSE	ACH-000709
KMRC2_KIDNEY	INIP--KCNU1	2	2	INIP	1250	chr9:115480267:-	KCNU1	32435	chr8:36763226:+	ONLY_REF_SPLICE	YES	23	0	0.15	1	0.0274	0.0274	INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-,KCNU1->chr8:36641842-36793646:+,potassium_calcium-activated_channel_subfamily_U_member_1	KMRC2_KIDNEY	0.15	1	0.0548	TRUE	0	0	0	1	0	TRUE	ACH-000709
KMRC2_KIDNEY	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.21	1	0.0274	0.0137	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMRC2_KIDNEY	0.21	1	0.0411	FALSE	125	705	46	456	0	FALSE	ACH-000709
KMRC2_KIDNEY	ETV6--YAF2	2	0	ETV6	1307	chr12:11803094:+	YAF2	35475	chr12:42555567:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-	KMRC2_KIDNEY	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000709
KMRC2_KIDNEY	FN1--LINC00607	2	0	FN1	27876	chr2:216256355:-	LINC00607	67042	chr2:216487484:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,LINC00607->chr2:216476286-216708445:-,long_intergenic_non-protein_coding_RNA_607	KMRC2_KIDNEY	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000709
KMRC2_KIDNEY	MYH9--TXN2	2	0	MYH9	18882	chr22:36705327:-	TXN2	48974	chr22:36863964:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[79020],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,TXN2->chr22:36863083-36878077:-,thioredoxin_2	KMRC2_KIDNEY	1	1	0.0274	TRUE	0	1	0	1	0	TRUE	ACH-000709
KMRC2_KIDNEY	MYL6B--COIL	2	0	MYL6B	4337	chr12:56549376:+	COIL	18247	chr17:55016515:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	MYL6B->chr12:56546040-56553431:+,myosin_light_chain_6B,COIL->chr17:55015548-55038415:-,coilin	KMRC2_KIDNEY	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000709
KMRC2_KIDNEY	RCC1--GNAS	2	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	KMRC2_KIDNEY	1	1	0.0274	TRUE	0	3	0	13	2	TRUE	ACH-000709
KMRC2_KIDNEY	RNF19A--SKAP2	2	0	RNF19A	4601	chr8:101322095:-	SKAP2	31638	chr7:26883756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	RNF19A->chr8:101269288-101348446:-,ring_finger_protein_19A,_RBR_E3_ubiquitin_protein_ligase,SKAP2->chr7:26706681-27034858:-,src_kinase_associated_phosphoprotein_2	KMRC2_KIDNEY	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000709
KMRC2_KIDNEY	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KMRC2_KIDNEY	1	1	0.0274	FALSE	416	2512	207	587	0	FALSE	ACH-000709
KMRC2_KIDNEY	TUBA4A--FAM177A1	2	0	TUBA4A	3110	chr2:220118578:-	FAM177A1	17855	chr14:35546356:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	TUBA4A->chr2:220114433-220142892:-,tubulin_alpha_4a,FAM177A1->chr14:35514113-35582336:+,family_with_sequence_similarity_177_member_A1	KMRC2_KIDNEY	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000709
KMRC2_KIDNEY	LRRC61--AHSA2	1	1	LRRC61	3950	chr7:150023099:+	AHSA2	12099	chr2:61406116:+	ONLY_REF_SPLICE	YES	270	57	0.01	0.03	0.0137	0.0137	LRRC61->chr7:150019728-150035239:+,leucine_rich_repeat_containing_61,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	KMRC2_KIDNEY	0.01	0.03	0.0274	FALSE	0	0	0	1	0	FALSE	ACH-000709
KMRC2_KIDNEY	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	7	0.5	0.22	0.0137	0.0137	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KMRC2_KIDNEY	0.22	0.5	0.0274	FALSE	0	48	1	163	0	FALSE	ACH-000709
KMRC2_KIDNEY	TNFSF10--NCEH1	1	1	TNFSF10	1255	chr3:172241043:-	NCEH1	14210	chr3:172365904:-	ONLY_REF_SPLICE	YES	872	192	0	0.01	0.0137	0.0137	TNFSF10->Oncogene{Bushman},chr3:172223298-172241297:-,tumor_necrosis_factor_superfamily_member_10,NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1	KMRC2_KIDNEY	0	0.01	0.0274	FALSE	0	1	0	1	0	FALSE	ACH-000709
KMRC2_KIDNEY	TRIT1--APLP2	1	1	TRIT1	4505	chr1:40319642:-	APLP2	38517	chr11:130011393:+	ONLY_REF_SPLICE	YES	59	620	0.03	0	0.0137	0.0137	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	KMRC2_KIDNEY	0	0.03	0.0274	FALSE	0	0	0	1	0	FALSE	ACH-000709
COLO829_SKIN	MT-ATP6--MT-CO1	147	0	MT-ATP6	1018	chrM:8544:+	MT-CO1	5856	chrM:7078:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2753	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO829_SKIN	1	1	1.2753	FALSE	183	104	9	328	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND6--MT-TE	89	8	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7721	0.0694	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO829_SKIN	1	1	0.8415	FALSE	499	1288	110	792	0	FALSE	ACH-000644
COLO829_SKIN	TIMM23B--LINC00843	85	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7374	0.1475	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COLO829_SKIN	1	1	0.8849	TRUE	508	994	45	981	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	80	3	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	11839	1403	0.01	0.06	0.694	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0.01	0.06	0.72	FALSE	231	217	16	283	0	FALSE	ACH-000644
COLO829_SKIN	TIMP3--MT-ND4	52	5	TIMP3	5621	chr22:33255392:+	MT-ND4	12727	chrM:11227:+	INCL_NON_REF_SPLICE	YES	5559	12417	0.01	0	0.4511	0.0434	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	COLO829_SKIN	0	0.01	0.4945	FALSE	0	0	0	10	0	FALSE	ACH-000644
COLO829_SKIN	TIMM23--RP11-464F9.1	44	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3817	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	COLO829_SKIN	1	1	0.3817	TRUE	519	3926	326	965	0	FALSE	ACH-000644
COLO829_SKIN	MT-TA--MT-TC	38	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3297	0.0174	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO829_SKIN	1	1	0.3471	FALSE	462	80	0	856	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND6--MT-TE	28	12	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2429	0.1041	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO829_SKIN	1	1	0.347	FALSE	499	1288	110	792	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND6--MT-TE	25	18	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.2169	0.1562	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO829_SKIN	0.93	1	0.3731	FALSE	499	1288	110	792	0	FALSE	ACH-000644
COLO829_SKIN	TIMP3--MT-ND4L	25	5	TIMP3	5604	chr22:33255375:+	MT-ND4L	12261	chrM:10471:+	INCL_NON_REF_SPLICE	YES	5587	0	0.01	1	0.2169	0.0434	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO829_SKIN	0.01	1	0.2603	FALSE	0	0	0	2	0	FALSE	ACH-000644
COLO829_SKIN	NRIP1--AF127936.7	23	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.81	1	0.1995	0.0174	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO829_SKIN	0.81	1	0.2169	FALSE	292	1546	117	613	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	21	2	MT-ND4	1151	chrM:10910:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	NO	7780	270	0	0.08	0.1822	0.0174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	0.08	0.1996	FALSE	230	193	14	283	0	FALSE	ACH-000644
COLO829_SKIN	RP11-141M1.3--STARD13	18	4	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	4	22	0.85	0.5	0.1562	0.0347	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	COLO829_SKIN	0.5	0.85	0.1909	FALSE	141	264	50	91	0	FALSE	ACH-000644
COLO829_SKIN	RP11-141M1.3--STARD13	16	6	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	4	22	0.85	0.5	0.1388	0.0521	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	COLO829_SKIN	0.5	0.85	0.1909	FALSE	49	120	16	70	0	FALSE	ACH-000644
COLO829_SKIN	RP11-444D3.1--SOX5	15	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	31	1	0.35	0.1301	0.0174	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	COLO829_SKIN	0.35	1	0.1475	TRUE	477	1352	189	275	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND6--MT-TE	7	31	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.0607	0.2689	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO829_SKIN	0.93	1	0.3296	FALSE	499	1288	110	792	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	14	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	9859	29	0	0.36	0.1215	0.0174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	0.36	0.1389	FALSE	230	193	14	283	0	FALSE	ACH-000644
COLO829_SKIN	EEF2--RPS28	14	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	1582	0	0.01	1	0.1215	0.0087	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	COLO829_SKIN	0.01	1	0.1302	TRUE	0	0	0	100	0	FALSE	ACH-000644
COLO829_SKIN	NPM1P24--SET	14	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1215	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	COLO829_SKIN	1	1	0.1215	TRUE	0	0	0	434	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	13	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11082	35	0	0.3	0.1128	0.0174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	0.3	0.1302	FALSE	231	205	14	283	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND6--MT-TE	6	27	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0.2342	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO829_SKIN	1	1	0.2863	FALSE	499	1288	110	792	0	FALSE	ACH-000644
COLO829_SKIN	HSP90AB1--MT-RNR2	12	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2082	0	0.01	1	0.1041	0.0087	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO829_SKIN	0.01	1	0.1128	FALSE	13	9	0	364	0	FALSE	ACH-000644
COLO829_SKIN	LIF--MT-CO1	11	0	LIF	3257	chr22:30639841:-	MT-CO1	10305	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0954	0	LIF->chr22:30636436-30642840:-,leukemia_inhibitory_factor,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO829_SKIN	1	1	0.0954	FALSE	0	0	0	8	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	10	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9689	35	0	0.26	0.0868	0.0174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	0.26	0.1042	FALSE	230	198	14	283	0	FALSE	ACH-000644
COLO829_SKIN	TRIML2--MT-ND4L	9	5	TRIML2	10378	chr4:189012673:-	MT-ND4L	13629	chrM:10474:+	INCL_NON_REF_SPLICE	YES	988	0	0.01	1	0.0781	0.0434	TRIML2->chr4:189012427-189030757:-,tripartite_motif_family_like_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO829_SKIN	0.01	1	0.1215	FALSE	0	0	0	1	0	FALSE	ACH-000644
COLO829_SKIN	NRIP1--AF127936.7	9	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	24	0	0.35	1	0.0781	0.0347	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO829_SKIN	0.35	1	0.1128	FALSE	125	705	46	456	0	FALSE	ACH-000644
COLO829_SKIN	C15orf57--CBX3	7	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	18	18	0.49	0.49	0.0607	0.0868	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COLO829_SKIN	0.49	0.49	0.1475	TRUE	267	562	48	632	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	9	2	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	7780	0	0	1	0.0781	0.0174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	1	0.0955	FALSE	230	193	14	283	0	FALSE	ACH-000644
COLO829_SKIN	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2123	0	0	1	0.0781	0.0087	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO829_SKIN	0	1	0.0868	FALSE	13	9	0	364	0	FALSE	ACH-000644
COLO829_SKIN	MT-ATP6--MT-CO1	8	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10666	15805	0	0	0.0694	0.0174	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO829_SKIN	0	0	0.0868	FALSE	183	104	9	328	0	FALSE	ACH-000644
COLO829_SKIN	TIMP3--MT-ND4	7	6	TIMP3	7020	chr22:33256791:+	MT-ND4	12741	chrM:11241:+	INCL_NON_REF_SPLICE	YES	929	12067	0.01	0	0.0607	0.0521	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	COLO829_SKIN	0	0.01	0.1128	FALSE	0	0	0	1	0	FALSE	ACH-000644
COLO829_SKIN	MT-ATP6--MT-CO1	8	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8863	15807	0	0	0.0694	0.0087	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO829_SKIN	0	0	0.0781	FALSE	183	104	9	328	0	FALSE	ACH-000644
COLO829_SKIN	AL136376.1--RPS28	8	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0694	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	COLO829_SKIN	1	1	0.0694	TRUE	0	0	0	12	0	TRUE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	7	4	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	12179	7	0	0.61	0.0607	0.0347	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	0.61	0.0954	FALSE	231	205	14	283	0	FALSE	ACH-000644
COLO829_SKIN	RP11-123O10.4--GRIP1	7	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0607	0.026	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO829_SKIN	1	1	0.0867	FALSE	416	2512	207	587	0	FALSE	ACH-000644
COLO829_SKIN	NRIP1--AF127936.7	6	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	30	0	0.29	1	0.0521	0.0521	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO829_SKIN	0.29	1	0.1042	FALSE	164	806	69	479	0	FALSE	ACH-000644
COLO829_SKIN	MT-TA--MT-TC	7	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0.0087	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO829_SKIN	1	1	0.0694	FALSE	462	80	0	856	0	FALSE	ACH-000644
COLO829_SKIN	TRIML2--MT-ND4L	6	5	TRIML2	10374	chr4:189012677:-	MT-ND4L	13625	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1055	0	0.01	1	0.0521	0.0434	TRIML2->chr4:189012427-189030757:-,tripartite_motif_family_like_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO829_SKIN	0.01	1	0.0955	FALSE	0	0	0	1	0	FALSE	ACH-000644
COLO829_SKIN	TIMP3--MT-CO2	5	6	TIMP3	5629	chr22:33255400:+	MT-CO2	12546	chrM:7872:+	INCL_NON_REF_SPLICE	YES	5615	15836	0	0	0.0434	0.0521	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	COLO829_SKIN	0	0	0.0955	FALSE	0	0	0	1	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND6--MT-TE	5	5	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0434	0.0434	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO829_SKIN	1	1	0.0868	FALSE	499	1288	110	792	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	5	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	11764	35	0	0.2	0.0434	0.0347	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	0.2	0.0781	FALSE	231	217	16	283	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO829_SKIN	1	1	0.0521	FALSE	499	1288	110	792	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND6--MT-TE	6	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO829_SKIN	1	1	0.0521	FALSE	499	1288	110	792	0	FALSE	ACH-000644
COLO829_SKIN	SLC1A5--MT-ND4L	6	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO829_SKIN	1	1	0.0521	FALSE	0	0	0	189	0	FALSE	ACH-000644
COLO829_SKIN	RP11-141M1.3--STARD13	4	7	RP11-141M1.3	11074	chr13:33933602:-	STARD13	15567	chr13:33924736:-	INCL_NON_REF_SPLICE	YES	4	0	0.73	1	0.0347	0.0607	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	COLO829_SKIN	0.73	1	0.0954	FALSE	0	0	0	3	0	FALSE	ACH-000644
COLO829_SKIN	C15orf57--CBX3	4	6	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	17	19	0.37	0.34	0.0347	0.0521	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COLO829_SKIN	0.34	0.37	0.0868	TRUE	267	562	48	632	0	FALSE	ACH-000644
COLO829_SKIN	C15orf57--CBX3	4	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	17	20	0.37	0.33	0.0347	0.0521	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COLO829_SKIN	0.33	0.37	0.0868	TRUE	267	562	48	632	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	4	6	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	11846	0	0	1	0.0347	0.0521	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	1	0.0868	FALSE	231	217	16	283	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	5	2	MT-ND4	1152	chrM:10911:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	7803	19	0	0.27	0.0434	0.0174	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	0.27	0.0608	FALSE	230	193	14	283	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	4	6	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	12147	0	0	1	0.0347	0.0521	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	1	0.0868	FALSE	231	217	16	283	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	4	6	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	11742	0	0	1	0.0347	0.0521	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	1	0.0868	FALSE	231	217	16	283	0	FALSE	ACH-000644
COLO829_SKIN	TIMP3--MT-CO2	5	2	TIMP3	5618	chr22:33255389:+	MT-CO2	12535	chrM:7861:+	INCL_NON_REF_SPLICE	YES	5579	15188	0	0	0.0434	0.0174	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	COLO829_SKIN	0	0	0.0608	FALSE	0	0	0	1	0	FALSE	ACH-000644
COLO829_SKIN	TIMP3--MT-ND4	5	2	TIMP3	5603	chr22:33255374:+	MT-ND4	12692	chrM:11192:+	INCL_NON_REF_SPLICE	YES	5573	12530	0	0	0.0434	0.0174	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	COLO829_SKIN	0	0	0.0608	FALSE	0	0	0	10	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	4	5	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11285	0	0	1	0.0347	0.0434	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	1	0.0781	FALSE	231	217	16	283	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	4	5	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	13254	0	0	1	0.0347	0.0434	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	1	0.0781	FALSE	231	217	16	283	0	FALSE	ACH-000644
COLO829_SKIN	TIMP3--MT-ND4	4	4	TIMP3	5656	chr22:33255427:+	MT-ND4	12785	chrM:11285:+	INCL_NON_REF_SPLICE	YES	5215	13827	0	0	0.0347	0.0347	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	COLO829_SKIN	0	0	0.0694	FALSE	0	0	0	10	0	FALSE	ACH-000644
COLO829_SKIN	MT-ATP6--MT-CO1	3	7	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3218	16104	0	0	0.026	0.0607	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO829_SKIN	0	0	0.0867	FALSE	183	104	9	328	0	FALSE	ACH-000644
COLO829_SKIN	TIMP3--MT-CO2	3	7	TIMP3	5636	chr22:33255407:+	MT-CO2	12363	chrM:7689:+	INCL_NON_REF_SPLICE	YES	5500	160	0	0.06	0.026	0.0607	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	COLO829_SKIN	0	0.06	0.0867	FALSE	0	0	0	1	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	3	6	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	11281	0	0	1	0.026	0.0521	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	1	0.0781	FALSE	231	217	16	283	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	3	6	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	12725	0	0	1	0.026	0.0521	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	1	0.0781	FALSE	231	217	16	283	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	3	6	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	12206	0	0	1	0.026	0.0521	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	1	0.0781	FALSE	231	217	16	283	0	FALSE	ACH-000644
COLO829_SKIN	MT-ATP6--MT-CO1	4	1	MT-ATP6	1564	chrM:9090:+	MT-CO1	5965	chrM:7187:+	INCL_NON_REF_SPLICE	YES	2188	10787	0	0	0.0347	0.0087	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO829_SKIN	0	0	0.0434	FALSE	183	104	9	328	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	3	5	MT-ND4	1528	chrM:11287:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	14182	29	0	0.22	0.026	0.0434	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	0.22	0.0694	FALSE	231	217	16	283	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	3	5	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	11746	0	0	1	0.026	0.0434	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	1	0.0694	FALSE	231	217	16	283	0	FALSE	ACH-000644
COLO829_SKIN	PSAP--GAPDH	4	1	PSAP	8522	chr10:73581679:-	GAPDH	20181	chr12:6646831:+	INCL_NON_REF_SPLICE	YES	2061	6859	0	0	0.0347	0.0087	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	COLO829_SKIN	0	0	0.0434	FALSE	0	0	0	8	0	FALSE	ACH-000644
COLO829_SKIN	MT-ATP6--MT-CO1	3	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	10666	0	0	1	0.026	0.0347	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO829_SKIN	0	1	0.0607	FALSE	182	97	9	327	0	FALSE	ACH-000644
COLO829_SKIN	MT-ATP6--MT-CO1	3	4	MT-ATP6	1313	chrM:8839:+	MT-CO1	5211	chrM:6433:+	INCL_NON_REF_SPLICE	YES	14015	14645	0	0	0.026	0.0347	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO829_SKIN	0	0	0.0607	FALSE	183	104	9	328	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	4	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	1	1	0.0347	FALSE	231	205	14	283	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO829_SKIN	1	1	0.0347	FALSE	499	1288	110	792	0	FALSE	ACH-000644
COLO829_SKIN	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO829_SKIN	1	1	0.0347	FALSE	462	80	0	856	0	FALSE	ACH-000644
COLO829_SKIN	TIMP3--MT-ND4	3	4	TIMP3	5612	chr22:33255383:+	MT-ND4	12646	chrM:11146:+	INCL_NON_REF_SPLICE	YES	5486	12958	0	0	0.026	0.0347	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	COLO829_SKIN	0	0	0.0607	FALSE	0	0	0	10	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND4--MT-ATP8	3	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	10272	1824	0	0	0.026	0.0087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO829_SKIN	0	0	0.0347	FALSE	231	204	14	283	0	FALSE	ACH-000644
COLO829_SKIN	PLOD1--GDF15	3	1	PLOD1	10318	chr1:12017953:+	GDF15	27987	chr19:18497197:+	INCL_NON_REF_SPLICE	YES	494	12264	0.01	0	0.026	0.0087	PLOD1->chr1:11994262-12035595:+,procollagen-lysine,2-oxoglutarate_5-dioxygenase_1,GDF15->Oncogene{Bushman},chr19:18485541-18499986:+,growth_differentiation_factor_15	COLO829_SKIN	0	0.01	0.0347	FALSE	0	0	0	1	0	FALSE	ACH-000644
COLO829_SKIN	RP4-565E6.1--HYDIN	3	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0.0087	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	COLO829_SKIN	1	1	0.0347	TRUE	456	1387	91	133	0	FALSE	ACH-000644
COLO829_SKIN	MT-ATP6--MT-CO1	3	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO829_SKIN	1	1	0.026	FALSE	183	104	9	328	0	FALSE	ACH-000644
COLO829_SKIN	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO829_SKIN	1	1	0.026	FALSE	183	104	9	328	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO829_SKIN	1	1	0.026	FALSE	499	1288	110	792	0	FALSE	ACH-000644
COLO829_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO829_SKIN	1	1	0.026	FALSE	499	1288	110	792	0	FALSE	ACH-000644
COLO829_SKIN	TIMP3--MT-ND4L	3	0	TIMP3	5654	chr22:33255425:+	MT-ND4L	12419	chrM:10629:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO829_SKIN	1	1	0.026	FALSE	0	0	0	2	0	FALSE	ACH-000644
COLO829_SKIN	RP11-444D3.1--SOX5	2	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	31	1	0.11	0.0174	0.0174	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	COLO829_SKIN	0.11	1	0.0348	TRUE	274	363	69	150	0	FALSE	ACH-000644
COLO829_SKIN	NUSAP1--OIP5	2	0	NUSAP1	1357	chr15:41625248:+	OIP5	20574	chr15:41611978:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	LOCAL_INVERSION:+:-:[73],NUSAP1->chr15:41624892-41673248:+,nucleolar_and_spindle_associated_protein_1,OIP5->Opa_interacting_protein_5,chr15:41601466-41624819:-	COLO829_SKIN	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000644
COLO829_SKIN	RPL34--ADRBK2	2	0	RPL34	1147	chr4:109541868:+	ADRBK2	30753	chr22:26117251:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	RPL34->chr4:109541722-109551568:+,ribosomal_protein_L34,ADRBK2->adrenergic,_beta,_receptor_kinase_2,chr22:25960816-26125261:+	COLO829_SKIN	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000644
COLO829_SKIN	RP11-141M1.3--STARD13	1	3	RP11-141M1.3	5599	chr13:34098375:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	10	22	0.29	0.15	0.0087	0.026	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	COLO829_SKIN	0.15	0.29	0.0347	FALSE	9	22	2	16	0	FALSE	ACH-000644
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	1067	790	FAM117A	7681	chr17:47809913:-	HDAC5	31312	chr17:42162043:-	ONLY_REF_SPLICE	YES	443	386	0.81	0.83	12.4235	9.1983	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.83	21.6218	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RASGRP3--VWC2	549	61	RASGRP3	4957	chr2:33701774:+	VWC2	40391	chr7:49842307:+	ONLY_REF_SPLICE	YES	6	164	0.99	0.79	6.3922	0.7102	RASGRP3->RAS_guanyl_releasing_protein_3,chr2:33661391-33789817:+,VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	0.99	7.1024	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	40	820	FAM117A	7681	chr17:47809913:-	HDAC5	30832	chr17:42162523:-	ONLY_REF_SPLICE	YES	443	380	0.66	0.69	0.4657	9.5476	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	0.69	10.0133	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	3	820	FAM117A	7952	chr17:47809642:-	HDAC5	30832	chr17:42162523:-	ONLY_REF_SPLICE	YES	495	380	0.62	0.68	0.0349	9.5476	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.68	9.5825	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP3CA--PDLIM5	150	77	PPP3CA	3741	chr4:102117073:-	PDLIM5	30761	chr4:95444875:+	ONLY_REF_SPLICE	YES	147	191	0.61	0.54	1.7465	0.8965	PPP3CA->chr4:101944566-102269435:-,protein_phosphatase_3_catalytic_subunit_alpha,PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.61	2.643	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	137	69	FAM117A	6289	chr17:47824543:-	HDAC5	31312	chr17:42162043:-	ONLY_REF_SPLICE	YES	243	386	0.46	0.35	1.5951	0.8034	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.46	2.3985	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARFGEF2--STAU1	120	73	ARFGEF2	2910	chr20:47558524:+	STAU1	56614	chr20:47736665:-	ONLY_REF_SPLICE	YES	8	167	0.96	0.54	1.3972	0.85	LOCAL_INVERSION:+:-:[76648],ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.96	2.2472	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	113	78	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	94	184	0.67	0.51	1.3157	0.9082	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.67	2.2239	TRUE	181	1564	124	196	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	3	343	FAM117A	7681	chr17:47809913:-	HDAC5	32133	chr17:42161222:-	ONLY_REF_SPLICE	YES	443	621	0.44	0.36	0.0349	3.9937	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.44	4.0286	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	86	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0013	0.1164	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1177	FALSE	462	80	0	856	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LSM12--MED13	67	62	LSM12	3290	chr17:42141169:-	MED13	37452	chr17:60038451:-	ONLY_REF_SPLICE	YES	208	14	0.38	0.9	0.7801	0.7219	LSM12->LSM12_homolog,chr17:42112003-42144987:-,MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.9	1.502	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDAC5--SCN4A	73	26	HDAC5	10865	chr17:42163940:-	SCN4A	47098	chr17:62016084:-	INCL_NON_REF_SPLICE	YES	372	5	0.21	0.95	0.85	0.3027	HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5,SCN4A->chr17:62015914-62050278:-,sodium_voltage-gated_channel_alpha_subunit_4	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.95	1.1527	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	59	81	FAM117A	7681	chr17:47809913:-	HDAC5	35105	chr17:42158250:-	ONLY_REF_SPLICE	YES	443	1477	0.24	0.09	0.687	0.9431	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.24	1.6301	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	66	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7685	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7685	TRUE	0	0	0	518	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	56	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.652	0.2329	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	0.8849	TRUE	508	994	45	981	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	15	154	FAM117A	7681	chr17:47809913:-	HDAC5	33167	chr17:42160188:-	ONLY_REF_SPLICE	YES	443	1387	0.28	0.11	0.1747	1.7931	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.28	1.9678	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	33	36	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	36403	chr9:22077678:+	ONLY_REF_SPLICE	YES	150	10	0.32	0.87	0.3842	0.4192	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.87	0.8034	FALSE	0	1	0	2	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBD1--UNC5C	30	32	TUBD1	4653	chr17:57963444:-	UNC5C	18576	chr4:96256782:-	ONLY_REF_SPLICE	YES	131	0	0.32	1	0.3493	0.3726	TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,UNC5C->chr4:96083655-96470357:-,unc-5_netrin_receptor_C	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.7219	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	37	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	135	22	0.22	0.63	0.4308	0.0116	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.63	0.4424	TRUE	519	3926	326	965	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	18	73	FAM117A	5206	chr17:47841254:-	HDAC5	30832	chr17:42162523:-	ONLY_REF_SPLICE	YES	183	380	0.33	0.19	0.2096	0.85	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.33	1.0596	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDAC5--SCN4A	22	38	HDAC5	10865	chr17:42163940:-	SCN4A	46509	chr17:62016673:-	INCL_NON_REF_SPLICE	YES	372	0	0.14	1	0.2562	0.4424	HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5,SCN4A->chr17:62015914-62050278:-,sodium_voltage-gated_channel_alpha_subunit_4	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.6986	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LSM12--MED13	25	17	LSM12	3290	chr17:42141169:-	MED13	38676	chr17:60033842:-	ONLY_REF_SPLICE	YES	208	76	0.17	0.36	0.2911	0.1979	LSM12->LSM12_homolog,chr17:42112003-42144987:-,MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.36	0.489	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	11	68	FAM117A	5206	chr17:47841254:-	HDAC5	31312	chr17:42162043:-	ONLY_REF_SPLICE	YES	183	386	0.3	0.17	0.1281	0.7917	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.3	0.9198	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	20	21	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	140	12	0.23	0.77	0.2329	0.2445	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.77	0.4774	TRUE	267	562	48	632	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	25	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2911	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2911	TRUE	0	42	0	133	42	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--B2M	22	2	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	11490	0	0	1	0.2562	0.0233	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2795	TRUE	0	0	0	28	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NEK1--CBR4	17	11	NEK1	17995	chr4:170458960:-	CBR4	50311	chr4:169785737:-	ONLY_REF_SPLICE	YES	11	2	0.72	0.93	0.1979	0.1281	NEK1->NIMA_related_kinase_1,chr4:170314426-170533780:-,CBR4->carbonyl_reductase_4,chr4:169784921-169931426:-	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	0.93	0.326	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	1	74	FAM117A	6289	chr17:47824543:-	HDAC5	30832	chr17:42162523:-	ONLY_REF_SPLICE	YES	243	380	0.24	0.16	0.0116	0.8616	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.24	0.8732	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	15	17	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	40771	chr9:22112319:+	ONLY_REF_SPLICE	YES	150	16	0.18	0.67	0.1747	0.1979	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.67	0.3726	FALSE	0	5	0	7	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	9	41	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	32562	chr9:22061952:+	ONLY_REF_SPLICE	YES	150	8	0.25	0.86	0.1048	0.4774	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.86	0.5822	FALSE	0	0	0	2	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACOXL--BCL2L11	14	20	ACOXL	14916	chr2:111666482:+	BCL2L11	42938	chr2:111907621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.163	0.2329	NEIGHBORS[1156],ACOXL->acyl-CoA_oxidase-like,chr2:111490150-111875799:+,BCL2L11->BCL2_like_11,Oncogene{Bushman},chr2:111876955-111926024:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3959	FALSE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RASGRP3--VWC2	9	33	RASGRP3	4957	chr2:33701774:+	VWC2	41521	chr7:49951630:+	ONLY_REF_SPLICE	YES	6	313	0.88	0.12	0.1048	0.3842	RASGRP3->RAS_guanyl_releasing_protein_3,chr2:33661391-33789817:+,VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.88	0.489	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1863	0.0466	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2329	FALSE	499	1288	110	792	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	7	40	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	33636	chr9:22063943:+	ONLY_REF_SPLICE	YES	150	8	0.24	0.85	0.0815	0.4657	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.85	0.5472	FALSE	0	1	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RASGRP3--VWC2	1	61	RASGRP3	4957	chr2:33701774:+	VWC2	38592	chr7:49814929:+	ONLY_REF_SPLICE	YES	6	0	0.91	1	0.0116	0.7102	RASGRP3->RAS_guanyl_releasing_protein_3,chr2:33661391-33789817:+,VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.7218	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACOXL--BCL2L11	11	14	ACOXL	11562	chr2:111598982:+	BCL2L11	42938	chr2:111907621:+	ONLY_REF_SPLICE	YES	2	0	0.93	1	0.1281	0.163	NEIGHBORS[1156],ACOXL->acyl-CoA_oxidase-like,chr2:111490150-111875799:+,BCL2L11->BCL2_like_11,Oncogene{Bushman},chr2:111876955-111926024:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.2911	FALSE	0	0	0	2	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDAC5--CD79B	13	6	HDAC5	10865	chr17:42163940:-	CD79B	24442	chr17:62008748:-	ONLY_REF_SPLICE	YES	372	307	0.05	0.06	0.1514	0.0699	HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5,CD79B->ArcherDX_panel,CD79b_molecule,FoundationOne_panel,Oncogene{Bushman},chr17:62006100-62009714:-	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.06	0.2213	TRUE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-ND2	14	0	MT-ATP6	1098	chrM:8624:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.163	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.163	FALSE	177	96	13	17	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	8	21	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	39664	chr9:22097257:+	ONLY_REF_SPLICE	YES	150	12	0.16	0.71	0.0931	0.2445	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.71	0.3376	FALSE	0	2	0	7	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	7	23	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	37616	chr9:22092307:+	ONLY_REF_SPLICE	YES	150	9	0.17	0.77	0.0815	0.2678	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.77	0.3493	FALSE	0	2	0	5	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPRIN3--VMP1	11	5	GPRIN3	1396	chr4:90228766:-	VMP1	30444	chr17:57886157:+	ONLY_REF_SPLICE	YES	322	265	0.05	0.06	0.1281	0.0582	GPRIN3->GPRIN_family_member_3,chr4:90157537-90229161:-,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.06	0.1863	TRUE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	11	3	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1340	0	0.01	1	0.1281	0.0349	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.163	FALSE	0	0	0	189	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--EEF1D	11	1	IGLL5	4009	chr22:23237961:+	EEF1D	7330	chr8:144681717:-	INCL_NON_REF_SPLICE	NO	1917	0	0.01	1	0.1281	0.0116	{Klijn_CCL:Lymphoid=1},IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1397	FALSE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.74	1	0.1164	0.0466	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	0.163	FALSE	499	1288	110	792	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	9	7	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	1	0.76	0.94	0.1048	0.0815	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.94	0.1863	FALSE	16	356	14	466	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	7	14	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	136	12	0.13	0.64	0.0815	0.163	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.64	0.2445	TRUE	267	562	48	632	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1164	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1164	TRUE	0	0	0	434	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP3CA--PDLIM5	3	26	PPP3CA	3741	chr4:102117073:-	PDLIM5	33106	chr4:95494502:+	ONLY_REF_SPLICE	YES	147	172	0.16	0.14	0.0349	0.3027	PPP3CA->chr4:101944566-102269435:-,protein_phosphatase_3_catalytic_subunit_alpha,PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.16	0.3376	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBD1--UNC5C	1	33	TUBD1	7004	chr17:57958255:-	UNC5C	18576	chr4:96256782:-	ONLY_REF_SPLICE	NO	51	0	0.4	1	0.0116	0.3842	TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,UNC5C->chr4:96083655-96470357:-,unc-5_netrin_receptor_C	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.3958	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRPEL1--D87015.1	9	0	GRPEL1	1227	chr4:7069698:-	D87015.1	10634	chr22:23101218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1048	0	GRPEL1->GrpE_like_1,_mitochondrial,chr4:7060633-7069924:-,D87015.1->chr22:23101185-23101279:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1048	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	8	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0931	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0931	TRUE	0	0	0	81	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	8	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0.0931	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.163	FALSE	462	80	0	856	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM117A--HDAC5	1	27	FAM117A	6289	chr17:47824543:-	HDAC5	32133	chr17:42161222:-	ONLY_REF_SPLICE	YES	243	621	0.1	0.04	0.0116	0.3144	FAM117A->Oncogene{Bushman},chr17:47787694-47866542:-,family_with_sequence_similarity_117_member_A,HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.1	0.326	TRUE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	11	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0.1281	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1863	FALSE	462	80	0	856	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF4E3--FOXP1	7	2	EIF4E3	10669	chr3:71739161:-	FOXP1	45380	chr3:71161788:-	ONLY_REF_SPLICE	YES	1018	3	0.01	0.75	0.0815	0.0233	NEIGHBORS[91427],EIF4E3->chr3:71724567-71803924:-,eukaryotic_translation_initiation_factor_4E_family_member_3,FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.75	0.1048	FALSE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-ND2	6	5	MT-ATP6	1140	chrM:8666:+	MT-ND2	5395	chrM:5183:+	INCL_NON_REF_SPLICE	YES	12833	13742	0	0	0.0699	0.0582	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1281	FALSE	177	96	13	17	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	6	5	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	35	0	0.24	1	0.0699	0.0582	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.1281	FALSE	272	151	14	158	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0699	0.0466	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1165	FALSE	499	1288	110	792	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0815	FALSE	462	80	0	856	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	11	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.75	1	0.0466	0.1281	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.1747	FALSE	499	1288	110	792	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACOXL--BCL2L11	4	9	ACOXL	11562	chr2:111598982:+	BCL2L11	47371	chr2:111921710:+	ONLY_REF_SPLICE	YES	2	7	0.87	0.65	0.0466	0.1048	NEIGHBORS[1156],ACOXL->acyl-CoA_oxidase-like,chr2:111490150-111875799:+,BCL2L11->BCL2_like_11,Oncogene{Bushman},chr2:111876955-111926024:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.87	0.1514	FALSE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--PTRH2	6	1	CCSER1	1297	chr4:91048982:+	PTRH2	45132	chr17:57775339:-	ONLY_REF_SPLICE	YES	0	84	1	0.08	0.0699	0.0116	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0815	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	1	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0.0116	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0815	FALSE	499	1288	110	792	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	5	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0582	0.0582	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.1164	FALSE	515	4851	409	746	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACOXL--BCL2L11	1	20	ACOXL	14916	chr2:111666482:+	BCL2L11	39490	chr2:111899890:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0.2329	NEIGHBORS[1156],ACOXL->acyl-CoA_oxidase-like,chr2:111490150-111875799:+,BCL2L11->BCL2_like_11,Oncogene{Bushman},chr2:111876955-111926024:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2445	FALSE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	4	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.75	1	0.0582	0.0466	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.1048	FALSE	499	1288	110	792	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHEK1--BMPR1B	5	3	CHEK1	11695	chr11:125514538:+	BMPR1B	21139	chr4:95796982:+	ONLY_REF_SPLICE	YES	66	0	0.11	1	0.0582	0.0349	CHEK1->ArcherDX_panel,FoundationOne_panel,checkpoint_kinase_1,chr11:125495036-125546150:+,BMPR1B->bone_morphogenetic_protein_receptor_type_1B,chr4:95679119-96079599:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0931	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	19	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	106	184	0.16	0.1	0.0116	0.2212	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.16	0.2328	TRUE	105	90	7	93	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	3	10	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	44105	chr9:22120199:+	ONLY_REF_SPLICE	YES	150	28	0.08	0.32	0.0349	0.1164	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.32	0.1513	FALSE	0	5	0	4	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRDM2--MT-ND4L	5	2	PRDM2	17152	chr1:14107322:+	MT-ND4L	28802	chrM:10485:+	INCL_NON_REF_SPLICE	YES	341	0	0.02	1	0.0582	0.0233	PRDM2->Oncogene{Bushman},PR_domain_2,chr1:14026693-14151574:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0815	FALSE	0	0	0	4	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GATS--PILRB	5	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	35	176	0.15	0.03	0.0582	0.0116	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.15	0.0698	TRUE	57	41	2	35	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDAC5--CD79B	3	8	HDAC5	10865	chr17:42163940:-	CD79B	23520	chr17:62009670:-	INCL_NON_REF_SPLICE	YES	372	0	0.03	1	0.0349	0.0931	HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5,CD79B->ArcherDX_panel,CD79b_molecule,FoundationOne_panel,Oncogene{Bushman},chr17:62006100-62009714:-	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.128	TRUE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0582	TRUE	22	156	2	142	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0582	TRUE	0	0	0	518	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-ND2	3	7	MT-ATP6	1158	chrM:8684:+	MT-ND2	5092	chrM:4880:+	INCL_NON_REF_SPLICE	YES	14392	19972	0	0	0.0349	0.0815	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1164	FALSE	177	96	13	17	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	7	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	NO	5	1	0.67	0.91	0.0349	0.0815	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.91	0.1164	FALSE	0	9	0	55	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDAC5--CD79B	3	6	HDAC5	10865	chr17:42163940:-	CD79B	24445	chr17:62008745:-	ONLY_REF_SPLICE	YES	372	307	0.02	0.03	0.0349	0.0699	HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5,CD79B->ArcherDX_panel,CD79b_molecule,FoundationOne_panel,Oncogene{Bushman},chr17:62006100-62009714:-	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.1048	TRUE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A5--MT-ND4L	4	2	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	720	0	0.01	1	0.0466	0.0233	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0699	FALSE	0	0	0	23	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AK7--PPP2R5C	4	1	AK7	18647	chr14:96944999:+	PPP2R5C	62593	chr14:102391478:+	ONLY_REF_SPLICE	YES	0	96	1	0.05	0.0466	0.0116	AK7->adenylate_kinase_7,chr14:96858448-96955764:+,PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-ND2	4	1	MT-ATP6	1130	chrM:8656:+	MT-ND2	5517	chrM:5305:+	INCL_NON_REF_SPLICE	YES	11753	7837	0	0	0.0466	0.0116	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0582	FALSE	177	96	13	17	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	5	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0.0582	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0931	FALSE	462	80	0	856	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.8	4	1	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	10	1	0.33	0.83	0.0466	0.0116	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.83	0.0582	TRUE	6	2	0	8	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0.0582	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0931	FALSE	467	2173	244	435	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACOXL--BCL2L11	1	12	ACOXL	14916	chr2:111666482:+	BCL2L11	47371	chr2:111921710:+	ONLY_REF_SPLICE	NO	0	7	1	0.65	0.0116	0.1397	NEIGHBORS[1156],ACOXL->acyl-CoA_oxidase-like,chr2:111490150-111875799:+,BCL2L11->BCL2_like_11,Oncogene{Bushman},chr2:111876955-111926024:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	0.1513	FALSE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IRF2--ING2	4	0	IRF2	1202	chr4:185395533:-	ING2	18795	chr4:184431435:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},IRF2->ArcherDX_panel,FoundationOne_panel,chr4:185308867-185395734:-,interferon_regulatory_factor_2,ING2->Oncogene{Bushman},chr4:184426147-184432249:+,inhibitor_of_growth_family_member_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0466	TRUE	0	0	0	2	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-ND2	4	0	MT-ATP6	1082	chrM:8608:+	MT-ND2	5581	chrM:5369:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0466	FALSE	177	96	13	17	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0466	TRUE	0	0	0	434	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-ND2	3	3	MT-ATP6	1153	chrM:8679:+	MT-ND2	5576	chrM:5364:+	INCL_NON_REF_SPLICE	YES	13756	3954	0	0	0.0349	0.0349	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0698	FALSE	177	96	13	17	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	3	3	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1325	0	0	1	0.0349	0.0349	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0698	FALSE	0	0	0	189	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACOXL--BCL2L11	1	10	ACOXL	10527	chr2:111562972:+	BCL2L11	42938	chr2:111907621:+	ONLY_REF_SPLICE	YES	6	0	0.65	1	0.0116	0.1164	NEIGHBORS[1156],ACOXL->acyl-CoA_oxidase-like,chr2:111490150-111875799:+,BCL2L11->BCL2_like_11,Oncogene{Bushman},chr2:111876955-111926024:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	0.128	FALSE	0	0	0	2	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARFGEF2--STAU1	2	6	ARFGEF2	1121	chr20:47538547:+	STAU1	56614	chr20:47736665:-	ONLY_REF_SPLICE	YES	14	167	0.36	0.05	0.0233	0.0699	LOCAL_INVERSION:+:-:[76648],ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.36	0.0932	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF4E3--FOXP1	2	5	EIF4E3	10669	chr3:71739161:-	FOXP1	27941	chr3:71542706:-	ONLY_REF_SPLICE	NO	1018	0	0.01	1	0.0233	0.0582	NEIGHBORS[91427],EIF4E3->chr3:71724567-71803924:-,eukaryotic_translation_initiation_factor_4E_family_member_3,FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0815	FALSE	27	2	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-ND2	3	1	MT-ATP6	1127	chrM:8653:+	MT-ND2	5145	chrM:4933:+	INCL_NON_REF_SPLICE	YES	11638	20398	0	0	0.0349	0.0116	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0465	FALSE	177	96	13	17	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	3	1	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	44409	chr9:22120503:+	ONLY_REF_SPLICE	YES	150	15	0.03	0.21	0.0349	0.0116	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.21	0.0465	FALSE	0	5	0	4	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.8	3	1	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	9	1	0.31	0.8	0.0349	0.0116	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.8	0.0465	TRUE	6	2	0	8	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL5	3	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0349	TRUE	0	0	0	39	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-ND2	3	0	MT-ATP6	1113	chrM:8639:+	MT-ND2	5608	chrM:5396:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0349	FALSE	177	96	13	17	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-ND2	3	0	MT-ATP6	1082	chrM:8608:+	MT-ND2	5507	chrM:5295:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0349	FALSE	177	96	13	17	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--NPM1	3	0	TXNDC5	2343	chr6:7910752:-	NPM1	18924	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0349	TRUE	0	0	0	5	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	3	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	YES	35	0	0.12	1	0.0233	0.0349	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.0582	FALSE	28	14	1	23	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR7--RP11-958F21.3	2	2	WDR7	31874	chr18:54629760:+	RP11-958F21.3	43841	chr18:22636354:+	ONLY_REF_SPLICE	YES	28	0	0.12	1	0.0233	0.0233	WDR7->WD_repeat_domain_7,chr18:54318574-54698828:+,RP11-958F21.3->chr18:22635564-22636724:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPE--RP11-499E18.1	2	1	CPE	2705	chr4:166300680:+	RP11-499E18.1	22739	chr4:103340145:-	ONLY_REF_SPLICE	YES	0	80	1	0.04	0.0233	0.0116	CPE->carboxypeptidase_E,chr4:166282346-166419472:+,RP11-499E18.1->chr4:103339759-103371167:-	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0233	0.0116	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0349	TRUE	62	24	1	171	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BLCAP--B2M	2	0	BLCAP	1139	chr20:36156195:-	B2M	18196	chr15:45007621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	BLCAP->Oncogene{Bushman},bladder_cancer_associated_protein,chr20:36120874-36156333:-,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BTBD7--ZC3H14	2	0	BTBD7	1273	chr14:93799166:-	ZC3H14	42992	chr14:89073587:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	BTBD7->BTB_domain_containing_7,chr14:93703896-93799438:-,ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC82--ANKS1A	2	0	CCDC82	1080	chr11:96123008:-	ANKS1A	31320	chr6:35021876:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CCDC82->chr11:96085933-96123087:-,coiled-coil_domain_containing_82,ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNN2--DAZAP1	2	0	CNN2	4331	chr19:1032695:+	DAZAP1	15810	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2]},CNN2->calponin_2,chr19:1026298-1039068:+,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	1	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DPY19L3--PITHD1	2	0	DPY19L3	4034	chr19:32902278:+	PITHD1	35832	chr1:24113765:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	DPY19L3->chr19:32896449-32976801:+,dpy-19_like_3_(C._elegans),PITHD1->PITH_domain_containing_1,chr1:24104895-24114722:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LARP1--ZC3H3	2	0	LARP1	2848	chr5:154135753:+	ZC3H3	32245	chr8:144590069:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+,ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--BPHL	2	0	RCC1	2175	chr1:28834672:+	BPHL	25271	chr6:3137596:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,BPHL->biphenyl_hydrolase-like_(serine_hydrolase),chr6:3118608-3153812:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEC11C--PPP2R5C	2	0	SEC11C	1559	chr18:56807267:+	PPP2R5C	32778	chr14:102323023:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	SEC11C->SEC11_homolog_C,_signal_peptidase_complex_subunit,chr18:56806709-56826068:+,PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SYNCRIP--PNRC1	2	0	SYNCRIP	1996	chr6:86352515:-	PNRC1	23376	chr6:89793472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_v2:{count=2;pct=0.02%;dist=Colon_-_Sigmoid=2},SYNCRIP->chr6:86318053-86353510:-,synaptotagmin_binding_cytoplasmic_RNA_interacting_protein,PNRC1->chr6:89790470-89794879:+,proline_rich_nuclear_receptor_coactivator_1	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	2	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVRAG--FBXO32	2	0	UVRAG	22513	chr11:75776832:+	FBXO32	37350	chr8:124526573:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,FBXO32->F-box_protein_32,chr8:124510129-124553446:-	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB1--BMI1	2	0	ZEB1	1798	chr10:31608221:+	BMI1	31789	chr10:22615360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	4	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP13-188A5.1--KLF8	1	2	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0116	0.0233	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0349	TRUE	10	78	6	20	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SS18L1--TAF4	1	2	SS18L1	1124	chr20:60718945:+	TAF4	21561	chr20:60589763:-	ONLY_REF_SPLICE	NO	40	16	0.07	0.16	0.0116	0.0233	GTEx_FI:{Skin=[count:2=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Pancreas=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[77956],SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.16	0.0349	TRUE	2	5	0	8	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	3676	56	0	0.05	0.0116	0.0233	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0349	FALSE	6	50	7	115	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD12--NDUFV2	1	1	ANKRD12	14034	chr18:9239554:+	NDUFV2	35941	chr18:9117836:+	ONLY_REF_SPLICE	NO	254	1410	0.01	0	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[1883],ANKRD12->ankyrin_repeat_domain_12,chr18:9136226-9285983:+,NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--PTRH2	1	1	CCSER1	1297	chr4:91048982:+	PTRH2	42921	chr17:57777550:-	ONLY_REF_SPLICE	YES	0	55	1	0.04	0.0116	0.0116	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD38--SQSTM1	1	1	CD38	1373	chr4:15780270:+	SQSTM1	32331	chr5:179263436:+	ONLY_REF_SPLICE	YES	647	2205	0	0	0.0116	0.0116	CD38->CD38_molecule,chr4:15779898-15854853:+,SQSTM1->chr5:179233388-179265078:+,sequestosome_1	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FRMD3--HNRNPK	1	1	FRMD3	1462	chr9:86153000:-	HNRNPK	28950	chr9:86593367:-	ONLY_REF_SPLICE	YES	79	509	0.02	0	0.0116	0.0116	FRMD3->FERM_domain_containing_3,chr9:85857905-86153461:-,HNRNPK->Oncogene{Bushman},chr9:86582998-86595569:-,heterogeneous_nuclear_ribonucleoprotein_K	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDAC5--CD79B	1	1	HDAC5	10865	chr17:42163940:-	CD79B	25942	chr17:62007248:-	ONLY_REF_SPLICE	YES	372	353	0.01	0.01	0.0116	0.0116	HDAC5->chr17:42154114-42201070:-,histone_deacetylase_5,CD79B->ArcherDX_panel,CD79b_molecule,FoundationOne_panel,Oncogene{Bushman},chr17:62006100-62009714:-	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--EEF1D	1	1	IGLL5	1480	chr22:23230439:+	EEF1D	18462	chr8:144669022:-	ONLY_REF_SPLICE	NO	451	560	0	0	0.0116	0.0116	{Klijn_CCL:Lymphoid=1},IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0232	FALSE	1	4	0	2	1	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED16--CNN2	1	1	MED16	9051	chr19:879937:-	CNN2	24620	chr19:1036129:+	ONLY_REF_SPLICE	YES	150	817	0.01	0	0.0116	0.0116	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood=[count:2=pct:1.1],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Whole_Blood=3,Liver=1,Esophagus_-_Mucosa=1,Spleen=1},MED16->chr19:867962-893218:-,mediator_complex_subunit_16,CNN2->calponin_2,chr19:1026298-1039068:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0232	FALSE	4	0	1	5	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCAPD2--ZC3H14	1	1	NCAPD2	2870	chr12:6604391:+	ZC3H14	42935	chr14:89077178:+	ONLY_REF_SPLICE	YES	273	254	0.01	0.01	0.0116	0.0116	NCAPD2->Oncogene{Bushman},chr12:6602522-6641121:+,non-SMC_condensin_I_complex_subunit_D2,ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OXNAD1--SDHA	1	1	OXNAD1	3600	chr3:16312578:+	SDHA	27939	chr5:230991:+	ONLY_REF_SPLICE	NO	142	850	0.01	0	0.0116	0.0116	OXNAD1->chr3:16306706-16391806:+,oxidoreductase_NAD_binding_domain_containing_1,SDHA->ArcherDX_panel,FoundationOne_panel,chr5:218356-256815:+,succinate_dehydrogenase_complex_flavoprotein_subunit_A	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCDH9--WEE1	1	1	PCDH9	5728	chr13:67799537:-	WEE1	17108	chr11:9597435:+	ONLY_REF_SPLICE	NO	321	38	0.01	0.05	0.0116	0.0116	PCDH9->chr13:66876967-67804468:-,protocadherin_9,WEE1->WEE1_G2_checkpoint_kinase,chr11:9595228-9615004:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM39--LINC00486	1	1	RBM39	13781	chr20:34309662:-	LINC00486	34317	chr2:33150420:+	ONLY_REF_SPLICE	NO	756	0	0	1	0.0116	0.0116	RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-,LINC00486->chr2:33050510-33151760:+,long_intergenic_non-protein_coding_RNA_486	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPF2--AMD1	1	1	RPF2	9102	chr6:111337059:+	AMD1	18962	chr6:111208708:+	ONLY_REF_SPLICE	YES	226	256	0.01	0.01	0.0116	0.0116	LOCAL_REARRANGEMENT:+:[86302],RPF2->chr6:111303218-111349466:+,ribosome_production_factor_2_homolog,AMD1->adenosylmethionine_decarboxylase_1,chr6:111195973-111216916:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL10--REPIN1	1	1	RPL10	4806	chrX:153628282:+	REPIN1	15672	chr7:150068317:+	ONLY_REF_SPLICE	YES	13779	345	0	0.01	0.0116	0.0116	RPL10->Oncogene{Bushman},chrX:153618315-153637504:+,ribosomal_protein_L10,REPIN1->chr7:150065278-150071133:+,replication_initiator_1	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPRD1B--MKL1	1	1	RPRD1B	8294	chr20:36694658:+	MKL1	23312	chr22:40859290:-	ONLY_REF_SPLICE	YES	47	44	0.04	0.04	0.0116	0.0116	RPRD1B->chr20:36661948-36720768:+,regulation_of_nuclear_pre-mRNA_domain_containing_1B,MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.04	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM123--BIRC2	1	1	TMEM123	5695	chr11:102319543:-	BIRC2	19387	chr11:102233627:+	ONLY_REF_SPLICE	YES	1817	256	0	0.01	0.0116	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},{Klijn_CCL:Brain=1},LOCAL_INVERSION:-:+:[17662],TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0232	FALSE	0	1	0	2	0	FALSE	ACH-000854
OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2D2--KDM5D	1	1	UBE2D2	5520	chr5:138994202:+	KDM5D	28460	chrY:21871695:-	ONLY_REF_SPLICE	YES	313	71	0.01	0.03	0.0116	0.0116	UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2,KDM5D->chrY:21865751-21906825:-,lysine_demethylase_5D	OCIMY5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000854
NCIH1792_LUNG	PVT1--RP11-89M16.1	514	801	PVT1	8346	chr8:128903244:+	RP11-89M16.1	40686	chr8:129419092:-	ONLY_REF_SPLICE	YES	1275	153	0.51	0.9	6.5195	10.1597	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.51	0.9	16.6792	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	398	499	PVT1	8346	chr8:128903244:+	RP11-89M16.1	40899	chr8:129418879:-	ONLY_REF_SPLICE	YES	1275	147	0.41	0.86	5.0481	6.3292	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.41	0.86	11.3773	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	SRSF7--SOS1	268	143	SRSF7	2966	chr2:38976671:-	SOS1	31762	chr2:39224566:-	ONLY_REF_SPLICE	YES	509	29	0.45	0.93	3.3993	1.8138	SRSF7->chr2:38970741-38978636:-,serine/arginine-rich_splicing_factor_7,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	NCIH1792_LUNG	0.45	0.93	5.2131	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	225	295	PVT1	1202	chr8:128806980:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	2383	0	0.18	1	2.8538	3.7417	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.18	1	6.5955	TRUE	0	2	0	3	2	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	34	309	PVT1	2457	chr8:128808254:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	2450	0	0.12	1	0.4312	3.9193	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.12	1	4.3505	TRUE	0	2	0	3	2	TRUE	ACH-000496
NCIH1792_LUNG	TIMM23B--LINC00843	103	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3064	0.3044	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1792_LUNG	1	1	1.6108	TRUE	508	994	45	981	0	FALSE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	8	311	PVT1	2520	chr8:128808317:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	2505	0	0.11	1	0.1015	3.9447	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.11	1	4.0462	TRUE	0	2	0	3	2	TRUE	ACH-000496
NCIH1792_LUNG	CCSER1--MMRN1	56	32	CCSER1	1297	chr4:91048982:+	MMRN1	41500	chr4:90815875:+	ONLY_REF_SPLICE	YES	7	0	0.93	1	0.7103	0.4059	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	NCIH1792_LUNG	0.93	1	1.1162	TRUE	0	3	0	5	3	TRUE	ACH-000496
NCIH1792_LUNG	TIMM23--RP11-464F9.1	61	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	273	2	0.2	0.97	0.7737	0.0888	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1792_LUNG	0.2	0.97	0.8625	TRUE	519	3926	326	965	0	FALSE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	40	58	PVT1	1202	chr8:128806980:+	RP11-89M16.1	40686	chr8:129419092:-	ONLY_REF_SPLICE	YES	2383	153	0.04	0.39	0.5074	0.7357	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.04	0.39	1.2431	TRUE	0	1	0	2	0	TRUE	ACH-000496
NCIH1792_LUNG	SRSF7--SOS1	10	159	SRSF7	3597	chr2:38976040:-	SOS1	31762	chr2:39224566:-	ONLY_REF_SPLICE	YES	559	29	0.23	0.85	0.1268	2.0167	SRSF7->chr2:38970741-38978636:-,serine/arginine-rich_splicing_factor_7,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	NCIH1792_LUNG	0.23	0.85	2.1435	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	SRGAP1--MSRB3	42	23	SRGAP1	5372	chr12:64383852:+	MSRB3	37969	chr12:65702309:+	ONLY_REF_SPLICE	YES	23	51	0.74	0.56	0.5327	0.2917	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3	NCIH1792_LUNG	0.56	0.74	0.8244	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	MT-TA--MT-TC	44	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5581	0.0381	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1792_LUNG	1	1	0.5962	FALSE	462	80	0	856	0	FALSE	ACH-000496
NCIH1792_LUNG	SRSF7--SOS1	5	154	SRSF7	3255	chr2:38976382:-	SOS1	31762	chr2:39224566:-	INCL_NON_REF_SPLICE	YES	553	29	0.22	0.85	0.0634	1.9533	SRSF7->chr2:38970741-38978636:-,serine/arginine-rich_splicing_factor_7,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	NCIH1792_LUNG	0.22	0.85	2.0167	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	18	96	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34734	chr8:129435839:-	ONLY_REF_SPLICE	YES	2383	56	0.05	0.67	0.2283	1.2176	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.05	0.67	1.4459	TRUE	0	1	0	3	0	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	11	99	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34720	chr8:129435853:-	INCL_NON_REF_SPLICE	YES	2383	57	0.04	0.66	0.1395	1.2557	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.04	0.66	1.3952	TRUE	0	1	0	3	0	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	6	98	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34727	chr8:129435846:-	INCL_NON_REF_SPLICE	YES	2383	57	0.04	0.65	0.0761	1.243	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.04	0.65	1.3191	TRUE	0	1	0	3	0	TRUE	ACH-000496
NCIH1792_LUNG	INPP4B--PHKB	19	37	INPP4B	7802	chr4:143646992:-	PHKB	98216	chr16:47722952:+	ONLY_REF_SPLICE	YES	7	57	0.89	0.5	0.241	0.4693	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,PHKB->chr16:47495034-47735434:+,phosphorylase_kinase_beta_subunit	NCIH1792_LUNG	0.5	0.89	0.7103	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	MT-ND5--MT-ND4	25	8	MT-ND5	2794	chrM:14130:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	0	6783	1	0	0.3171	0.1015	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1792_LUNG	0	1	0.4186	FALSE	47	27	1	24	0	FALSE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	2	100	PVT1	2520	chr8:128808317:+	RP11-89M16.1	34734	chr8:129435839:-	ONLY_REF_SPLICE	YES	2505	56	0.04	0.65	0.0254	1.2684	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.04	0.65	1.2938	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	1	99	PVT1	2457	chr8:128808254:+	RP11-89M16.1	34734	chr8:129435839:-	ONLY_REF_SPLICE	YES	2450	56	0.04	0.64	0.0127	1.2557	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.04	0.64	1.2684	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	AP003900.6--AC008132.1	24	6	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3044	0.0761	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH1792_LUNG	1	1	0.3805	TRUE	0	0	0	25	0	FALSE	ACH-000496
NCIH1792_LUNG	R3HDM2--NFE2	21	9	R3HDM2	2356	chr12:57789532:-	NFE2	36116	chr12:54689088:-	ONLY_REF_SPLICE	YES	8	16	0.79	0.65	0.2664	0.1142	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,NFE2->chr12:54685895-54694905:-,nuclear_factor,_erythroid_2	NCIH1792_LUNG	0.65	0.79	0.3806	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	MT-ND4--MT-ND4L	3	71	MT-ND4	1263	chrM:11022:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	25	1	0.75	0.99	0.0381	0.9005	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1792_LUNG	0.75	0.99	0.9386	FALSE	344	827	44	306	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-ND4--MT-ND4L	3	71	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	12	0	0.86	1	0.0381	0.9005	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1792_LUNG	0.86	1	0.9386	FALSE	344	826	44	306	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-ND4--MT-ND4L	3	69	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	7	0	0.91	1	0.0381	0.8752	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1792_LUNG	0.91	1	0.9133	FALSE	344	826	44	306	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-ND6--MT-TE	18	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2283	0.0381	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1792_LUNG	1	1	0.2664	FALSE	499	1288	110	792	0	FALSE	ACH-000496
NCIH1792_LUNG	CAPRIN2--TMEM117	15	11	CAPRIN2	11422	chr12:30881582:-	TMEM117	38362	chr12:44770378:+	ONLY_REF_SPLICE	YES	52	2	0.33	0.93	0.1903	0.1395	CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-,TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117	NCIH1792_LUNG	0.33	0.93	0.3298	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	2	61	PVT1	1202	chr8:128806980:+	RP11-89M16.1	39491	chr8:129426654:-	ONLY_REF_SPLICE	NO	2383	118	0.03	0.35	0.0254	0.7737	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.03	0.35	0.7991	TRUE	0	1	0	2	0	FALSE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	2	61	PVT1	2457	chr8:128808254:+	RP11-89M16.1	40686	chr8:129419092:-	ONLY_REF_SPLICE	YES	2450	153	0.03	0.29	0.0254	0.7737	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.03	0.29	0.7991	TRUE	0	1	0	2	0	FALSE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	1	62	PVT1	2520	chr8:128808317:+	RP11-89M16.1	40686	chr8:129419092:-	ONLY_REF_SPLICE	NO	2505	153	0.02	0.29	0.0127	0.7864	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.02	0.29	0.7991	TRUE	0	1	0	2	0	FALSE	ACH-000496
NCIH1792_LUNG	CUX1--CDHR3	16	1	CUX1	1415	chr7:101459373:+	CDHR3	64564	chr7:105551463:+	ONLY_REF_SPLICE	YES	12	4	0.59	0.81	0.2029	0.0127	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,CDHR3->cadherin_related_family_member_3,chr7:105517242-105676877:+	NCIH1792_LUNG	0.59	0.81	0.2156	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	MT-ND4--MT-ND4L	4	46	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	1	0.93	0.98	0.0507	0.5835	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1792_LUNG	0.93	0.98	0.6342	FALSE	344	821	44	306	0	FALSE	ACH-000496
NCIH1792_LUNG	PVT1--RP11-89M16.1	8	27	PVT1	1202	chr8:128806980:+	RP11-89M16.1	40899	chr8:129418879:-	ONLY_REF_SPLICE	YES	2383	147	0.01	0.19	0.1015	0.3425	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH1792_LUNG	0.01	0.19	0.444	TRUE	0	1	0	2	0	FALSE	ACH-000496
NCIH1792_LUNG	CCSER1--MMRN1	13	4	CCSER1	1297	chr4:91048982:+	MMRN1	44504	chr4:90830427:+	ONLY_REF_SPLICE	YES	7	19	0.71	0.47	0.1649	0.0507	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	NCIH1792_LUNG	0.47	0.71	0.2156	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	MT-ND5--MT-ND4	3	41	MT-ND5	2813	chrM:14149:+	MT-ND4	5799	chrM:10746:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0381	0.52	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1792_LUNG	1	1	0.5581	FALSE	27	25	1	22	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-ND6--MT-TE	12	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1522	0.0381	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1792_LUNG	1	1	0.1903	FALSE	499	1288	110	792	0	FALSE	ACH-000496
NCIH1792_LUNG	RP11-123O10.4--GRIP1	12	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1522	0.0381	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1792_LUNG	1	1	0.1903	FALSE	416	2512	207	587	0	FALSE	ACH-000496
NCIH1792_LUNG	LSAMP--RP11-501O2.3	12	1	LSAMP	5056	chr3:116163724:-	RP11-501O2.3	26832	chr3:147878698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1522	0.0127	LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein,RP11-501O2.3->chr3:147878698-147944393:+	NCIH1792_LUNG	1	1	0.1649	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	MT-TA--MT-TC	11	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1395	0.0381	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1792_LUNG	1	1	0.1776	FALSE	462	80	0	856	0	FALSE	ACH-000496
NCIH1792_LUNG	INPP4B--PHKB	2	38	INPP4B	8922	chr4:143581930:-	PHKB	98216	chr16:47722952:+	ONLY_REF_SPLICE	YES	7	57	0.85	0.41	0.0254	0.482	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,PHKB->chr16:47495034-47735434:+,phosphorylase_kinase_beta_subunit	NCIH1792_LUNG	0.41	0.85	0.5074	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	TRAF2--TSPAN1	10	5	TRAF2	8092	chr9:139794972:+	TSPAN1	26518	chr1:46649863:+	ONLY_REF_SPLICE	YES	59	17	0.2	0.47	0.1268	0.0634	TRAF2->TNF_receptor_associated_factor_2,chr9:139776364-139821059:+,TSPAN1->Oncogene{Bushman},chr1:46640745-46651630:+,tetraspanin_1	NCIH1792_LUNG	0.2	0.47	0.1902	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	AREL1--RP11-320M16.2	10	4	AREL1	4749	chr14:75158744:-	RP11-320M16.2	33712	chr14:32845248:-	ONLY_REF_SPLICE	YES	65	1	0.18	0.93	0.1268	0.0507	AREL1->apoptosis_resistant_E3_ubiquitin_protein_ligase_1,chr14:75120140-75179818:-,RP11-320M16.2->chr14:32842543-32887180:-	NCIH1792_LUNG	0.18	0.93	0.1775	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	MT-ND4--MT-ND4L	6	19	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8433	0	0	1	0.0761	0.241	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1792_LUNG	0	1	0.3171	FALSE	328	800	43	304	0	FALSE	ACH-000496
NCIH1792_LUNG	TRAF2--TSPAN1	9	7	TRAF2	8092	chr9:139794972:+	TSPAN1	24695	chr1:46646772:+	ONLY_REF_SPLICE	YES	59	17	0.21	0.48	0.1142	0.0888	TRAF2->TNF_receptor_associated_factor_2,chr9:139776364-139821059:+,TSPAN1->Oncogene{Bushman},chr1:46640745-46651630:+,tetraspanin_1	NCIH1792_LUNG	0.21	0.48	0.203	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	HSP90AB1--MT-RNR2	10	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1268	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1792_LUNG	1	1	0.1268	FALSE	13	9	0	364	0	FALSE	ACH-000496
NCIH1792_LUNG	NIPA2--POLA1	10	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1268	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	NCIH1792_LUNG	1	1	0.1268	TRUE	46	1352	75	139	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-ND5--MT-ND4	9	3	MT-ND5	2112	chrM:13448:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	5253	6783	0	0	0.1142	0.0381	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1792_LUNG	0	0	0.1523	FALSE	47	29	1	25	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-ND4--MT-ND4L	5	18	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	9	0	0.72	1	0.0634	0.2283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1792_LUNG	0.72	1	0.2917	FALSE	344	826	44	306	0	FALSE	ACH-000496
NCIH1792_LUNG	NUS1--RP11-667F9.2	8	5	NUS1	1584	chr6:117997248:+	RP11-667F9.2	12842	chr7:64928286:+	ONLY_REF_SPLICE	YES	168	0	0.07	1	0.1015	0.0634	NUS1->NUS1_dehydrodolichyl_diphosphate_synthase_subunit,chr6:117996665-118031803:+,RP11-667F9.2->chr7:64927984-64928351:+	NCIH1792_LUNG	0.07	1	0.1649	TRUE	0	1	0	2	0	TRUE	ACH-000496
NCIH1792_LUNG	INPP4B--PHKB	5	16	INPP4B	2181	chr4:143767362:-	PHKB	98216	chr16:47722952:+	ONLY_REF_SPLICE	YES	4	57	0.84	0.27	0.0634	0.2029	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,PHKB->chr16:47495034-47735434:+,phosphorylase_kinase_beta_subunit	NCIH1792_LUNG	0.27	0.84	0.2663	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	MT-CO3--MT-ATP6	4	17	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	NO	6	0	0.78	1	0.0507	0.2156	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1792_LUNG	0.78	1	0.2663	FALSE	189	492	56	216	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-ND6--MT-TE	7	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.0888	0.0634	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1792_LUNG	0.86	1	0.1522	FALSE	499	1288	110	792	0	FALSE	ACH-000496
NCIH1792_LUNG	SMEK2--RP11-785H5.1	6	8	SMEK2	2249	chr2:55844767:-	RP11-785H5.1	28182	chr12:11324021:+	INCL_NON_REF_SPLICE	YES	8	0	0.64	1	0.0761	0.1015	SMEK2->chr2:55774428-55846015:-,RP11-785H5.1->chr12:11323963-11324164:+	NCIH1792_LUNG	0.64	1	0.1776	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	MT-CO3--MT-ATP6	5	11	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	4	0	0.8	1	0.0634	0.1395	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1792_LUNG	0.8	1	0.2029	FALSE	189	492	56	216	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-CO3--MT-ATP6	7	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	7	0	0.53	1	0.0888	0.0127	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1792_LUNG	0.53	1	0.1015	FALSE	189	492	56	216	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-ND4--MT-ND4L	5	9	MT-ND4	1192	chrM:10951:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	11	0	0.56	1	0.0634	0.1142	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1792_LUNG	0.56	1	0.1776	FALSE	344	826	44	306	0	FALSE	ACH-000496
NCIH1792_LUNG	RP11-680G10.1--GSE1	6	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.53	0.0761	0.0507	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1792_LUNG	0.53	1	0.1268	TRUE	458	1351	185	561	0	FALSE	ACH-000496
NCIH1792_LUNG	C15orf57--CBX3	6	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	66	19	0.12	0.32	0.0761	0.0381	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1792_LUNG	0.12	0.32	0.1142	TRUE	267	562	48	632	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-ND5--MT-ND4	3	15	MT-ND5	2707	chrM:14043:+	MT-ND4	6150	chrM:11097:+	INCL_NON_REF_SPLICE	YES	136	11558	0.12	0	0.0381	0.1903	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1792_LUNG	0	0.12	0.2284	FALSE	47	27	1	24	0	FALSE	ACH-000496
NCIH1792_LUNG	AP003900.6--AC008132.1	5	6	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0634	0.0761	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH1792_LUNG	1	1	0.1395	TRUE	0	0	0	12	0	TRUE	ACH-000496
NCIH1792_LUNG	CUX1--CDHR3	6	2	CUX1	1415	chr7:101459373:+	CDHR3	63774	chr7:105550673:+	ONLY_REF_SPLICE	YES	12	7	0.4	0.53	0.0761	0.0254	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,CDHR3->cadherin_related_family_member_3,chr7:105517242-105676877:+	NCIH1792_LUNG	0.4	0.53	0.1015	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	MT-ND4--MT-ND4L	4	10	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10	0	0.58	1	0.0507	0.1268	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1792_LUNG	0.58	1	0.1775	FALSE	344	826	44	306	0	FALSE	ACH-000496
NCIH1792_LUNG	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0761	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1792_LUNG	1	1	0.0761	FALSE	13	9	0	364	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-ND4--MT-ND4L	3	11	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	284	0	0.05	1	0.0381	0.1395	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1792_LUNG	0.05	1	0.1776	FALSE	344	827	44	306	0	FALSE	ACH-000496
NCIH1792_LUNG	AP003900.6--AC008132.1	5	2	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0634	0.0254	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH1792_LUNG	1	1	0.0888	TRUE	0	0	0	16	0	TRUE	ACH-000496
NCIH1792_LUNG	AP003900.6--AC008132.1	3	10	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0.1268	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH1792_LUNG	1	1	0.1649	TRUE	1	1	0	28	1	FALSE	ACH-000496
NCIH1792_LUNG	DMD--DCLK2	4	6	DMD	29801	chrX:32509394:-	DCLK2	115533	chr4:151141855:+	ONLY_REF_SPLICE	YES	11	40	0.48	0.2	0.0507	0.0761	DMD->chrX:31115794-33357558:-,dystrophin,DCLK2->chr4:150999426-151178609:+,doublecortin_like_kinase_2	NCIH1792_LUNG	0.2	0.48	0.1268	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	MYRIP--LSAMP	5	0	MYRIP	2003	chr3:39851407:+	LSAMP	31370	chr3:116163802:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0634	0	MYRIP->chr3:39850405-40301812:+,myosin_VIIA_and_Rab_interacting_protein,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	NCIH1792_LUNG	1	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	CHSY3--HSPA8P4	4	1	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	10	0	0.33	1	0.0507	0.0127	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	NCIH1792_LUNG	0.33	1	0.0634	FALSE	89	26	1	44	0	FALSE	ACH-000496
NCIH1792_LUNG	IMMP2L--DOCK4	4	1	IMMP2L	4976	chr7:111127294:-	DOCK4	58674	chr7:111409733:-	ONLY_REF_SPLICE	YES	34	43	0.13	0.1	0.0507	0.0127	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	NCIH1792_LUNG	0.1	0.13	0.0634	TRUE	0	0	0	2	0	TRUE	ACH-000496
NCIH1792_LUNG	MT-ND6--MT-TE	3	5	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0381	0.0634	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1792_LUNG	0.8	1	0.1015	FALSE	499	1288	110	792	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0.0127	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1792_LUNG	1	1	0.0634	FALSE	462	80	0	856	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-TA--MT-TC	3	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0381	0.0634	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1792_LUNG	1	1	0.1015	FALSE	462	80	0	856	0	FALSE	ACH-000496
NCIH1792_LUNG	PARD3--CUL2	4	1	PARD3	1450	chr10:35103804:-	CUL2	56110	chr10:35305322:-	ONLY_REF_SPLICE	YES	62	158	0.07	0.03	0.0507	0.0127	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,CUL2->chr10:35297479-35379570:-,cullin_2	NCIH1792_LUNG	0.03	0.07	0.0634	TRUE	0	1	0	2	1	FALSE	ACH-000496
NCIH1792_LUNG	PKM--PPIA	4	1	PKM	16753	chr15:72494877:-	PPIA	23268	chr7:44836286:+	INCL_NON_REF_SPLICE	YES	6304	0	0	1	0.0507	0.0127	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	NCIH1792_LUNG	0	1	0.0634	FALSE	0	0	0	18	0	FALSE	ACH-000496
NCIH1792_LUNG	RP11-120D5.1--MID1	2	9	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	5	106	0.69	0.09	0.0254	0.1142	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1792_LUNG	0.09	0.69	0.1396	FALSE	16	356	14	466	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1012	chrM:9218:+	MT-ATP6	5425	chrM:9167:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1792_LUNG	1	1	0.0507	FALSE	189	492	56	216	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-ND5--MT-ND4	3	4	MT-ND5	1408	chrM:12744:+	MT-ND4	6001	chrM:10948:+	INCL_NON_REF_SPLICE	YES	295	5514	0.02	0	0.0381	0.0507	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1792_LUNG	0	0.02	0.0888	FALSE	17	23	0	20	0	FALSE	ACH-000496
NCIH1792_LUNG	TRAF2--TSPAN1	2	8	TRAF2	8092	chr9:139794972:+	TSPAN1	24121	chr1:46646198:+	ONLY_REF_SPLICE	YES	59	1	0.14	0.91	0.0254	0.1015	TRAF2->TNF_receptor_associated_factor_2,chr9:139776364-139821059:+,TSPAN1->Oncogene{Bushman},chr1:46640745-46651630:+,tetraspanin_1	NCIH1792_LUNG	0.14	0.91	0.1269	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	MT-ATP8--MT-ND1	3	3	MT-ATP8	1209	chrM:8574:+	MT-ND1	4219	chrM:3318:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0381	0.0381	LOCAL_REARRANGEMENT:+:[4104],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1792_LUNG	1	1	0.0762	FALSE	2	1	0	2	0	FALSE	ACH-000496
NCIH1792_LUNG	RP11-680G10.1--GSE1	3	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	63	1	0.09	0.0381	0.0381	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1792_LUNG	0.09	1	0.0762	TRUE	465	1949	224	605	0	FALSE	ACH-000496
NCIH1792_LUNG	C15orf57--CBX3	3	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	62	19	0.07	0.21	0.0381	0.0254	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1792_LUNG	0.07	0.21	0.0635	TRUE	267	562	48	632	0	FALSE	ACH-000496
NCIH1792_LUNG	DMD--DCLK2	2	6	DMD	29801	chrX:32509394:-	DCLK2	115536	chr4:151141858:+	ONLY_REF_SPLICE	YES	11	35	0.42	0.19	0.0254	0.0761	DMD->chrX:31115794-33357558:-,dystrophin,DCLK2->chr4:150999426-151178609:+,doublecortin_like_kinase_2	NCIH1792_LUNG	0.19	0.42	0.1015	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	RP11-120D5.1--MID1	2	6	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	9	106	0.47	0.07	0.0254	0.0761	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1792_LUNG	0.07	0.47	0.1015	FALSE	0	48	1	163	0	FALSE	ACH-000496
NCIH1792_LUNG	SRGAP1--MSRB3	2	6	SRGAP1	5372	chr12:64383852:+	MSRB3	40381	chr12:65720606:+	ONLY_REF_SPLICE	YES	23	57	0.26	0.12	0.0254	0.0761	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3	NCIH1792_LUNG	0.12	0.26	0.1015	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	7	0	0.36	1	0.0381	0.0127	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1792_LUNG	0.36	1	0.0508	FALSE	189	492	56	216	0	FALSE	ACH-000496
NCIH1792_LUNG	SCARB1--UBC	3	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	459	57	0.01	0.07	0.0381	0.0127	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH1792_LUNG	0.01	0.07	0.0508	FALSE	55	66	6	101	0	FALSE	ACH-000496
NCIH1792_LUNG	CCDC124--MT-ND4L	3	0	CCDC124	6099	chr19:18054692:+	MT-ND4L	9209	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0381	0	CCDC124->chr19:18043825-18054800:+,coiled-coil_domain_containing_124,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1792_LUNG	1	1	0.0381	FALSE	0	0	0	1	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0381	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1792_LUNG	1	1	0.0381	FALSE	183	104	9	328	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0381	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1792_LUNG	1	1	0.0381	FALSE	183	104	9	328	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0381	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1792_LUNG	1	1	0.0381	FALSE	189	492	56	216	0	FALSE	ACH-000496
NCIH1792_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0381	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1792_LUNG	1	1	0.0381	FALSE	499	1288	110	792	0	FALSE	ACH-000496
NCIH1792_LUNG	RPSAP52--HMGA2	3	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0381	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	NCIH1792_LUNG	1	1	0.0381	FALSE	0	59	0	125	0	FALSE	ACH-000496
NCIH1792_LUNG	SLC1A5--MT-ND4L	3	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0381	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1792_LUNG	1	1	0.0381	FALSE	0	0	0	189	0	FALSE	ACH-000496
NCIH1792_LUNG	SRGAP1--MSRB3	2	4	SRGAP1	4209	chr12:64377922:+	MSRB3	37969	chr12:65702309:+	ONLY_REF_SPLICE	NO	60	51	0.09	0.11	0.0254	0.0507	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3	NCIH1792_LUNG	0.09	0.11	0.0761	TRUE	0	0	0	1	0	FALSE	ACH-000496
NCIH1792_LUNG	ETV6--A2ML1-AS1	2	2	ETV6	11057	chr12:12022903:+	A2ML1-AS1	23050	chr12:8928980:-	ONLY_REF_SPLICE	YES	55	0	0.07	1	0.0254	0.0254	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,A2ML1-AS1->A2ML1_antisense_RNA_1,chr12:8928815-8983543:-	NCIH1792_LUNG	0.07	1	0.0508	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	PTPRK--RSPO3	2	1	PTPRK	16110	chr6:128540067:-	RSPO3	55573	chr6:127469793:+	ONLY_REF_SPLICE	YES	106	0	0.03	1	0.0254	0.0127	Cosmic{samples=69,mutations=5,papers=2},PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,RSPO3->Oncogene{Bushman},R-spondin_3,chr6:127439749-127518910:+	NCIH1792_LUNG	0.03	1	0.0381	TRUE	0	0	0	1	0	FALSE	ACH-000496
NCIH1792_LUNG	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0254	0.0127	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1792_LUNG	0.75	1	0.0381	FALSE	275	511	55	178	0	FALSE	ACH-000496
NCIH1792_LUNG	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0254	0.0127	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1792_LUNG	0.75	1	0.0381	FALSE	407	2205	196	549	0	FALSE	ACH-000496
NCIH1792_LUNG	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0254	0.0127	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1792_LUNG	0.75	1	0.0381	FALSE	515	4851	409	746	0	FALSE	ACH-000496
NCIH1792_LUNG	AP003900.6--AC008132.1	2	0	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH1792_LUNG	1	1	0.0254	TRUE	0	0	0	13	0	TRUE	ACH-000496
NCIH1792_LUNG	CEP120--RP11-467L24.1	2	0	CEP120	8213	chr5:122734830:-	RP11-467L24.1	31036	chr16:64509592:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	CEP120->centrosomal_protein_120,chr5:122680579-122759286:-,RP11-467L24.1->chr16:64398684-64634150:+	NCIH1792_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	DTD1--TTI1	2	0	DTD1	4657	chr20:18608877:+	TTI1	18780	chr20:36634799:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	DTD1->D-tyrosyl-tRNA_deacylase_1,chr20:18568537-18744561:+,TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-	NCIH1792_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	FAM208B--ASB13	2	0	FAM208B	1338	chr10:5727138:+	ASB13	35779	chr10:5695013:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_INVERSION:+:-:[18243],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,ASB13->ankyrin_repeat_and_SOCS_box_containing_13,chr10:5680830-5708558:-	NCIH1792_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	KCNQ5-IT1--KCNQ5	2	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	NCIH1792_LUNG	1	1	0.0254	FALSE	1	11	0	34	0	FALSE	ACH-000496
NCIH1792_LUNG	TTC3--PPAP2A	2	0	TTC3	1248	chr21:38445773:+	PPAP2A	72529	chr5:54737736:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3,PPAP2A->chr5:54720682-54830878:-	NCIH1792_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	UGT1A6--C15orf41	2	0	UGT1A6	3214	chr2:234602511:+	C15orf41	19548	chr15:36932806:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	UGT1A6->UDP_glucuronosyltransferase_family_1_member_A6,chr2:234600253-234681946:+,C15orf41->chr15:36871812-37102449:+,chromosome_15_open_reading_frame_41	NCIH1792_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	ZNF611--TXNRD1	2	0	ZNF611	1073	chr19:53238254:-	TXNRD1	46996	chr12:104732917:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	ZNF611->chr19:53206066-53238326:-,zinc_finger_protein_611,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	NCIH1792_LUNG	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	RPRD1B--RP11-379J5.5	1	2	RPRD1B	2683	chr20:36668966:+	RP11-379J5.5	18505	chr20:18672660:-	ONLY_REF_SPLICE	YES	92	0	0.03	1	0.0127	0.0254	RPRD1B->chr20:36661948-36720768:+,regulation_of_nuclear_pre-mRNA_domain_containing_1B,RP11-379J5.5->chr20:18655039-18679353:-	NCIH1792_LUNG	0.03	1	0.0381	TRUE	0	0	0	1	0	FALSE	ACH-000496
NCIH1792_LUNG	AC074286.1--MTX2	1	1	AC074286.1	1119	chr2:178257301:-	MTX2	22060	chr2:177161588:+	ONLY_REF_SPLICE	YES	3	238	0.4	0.01	0.0127	0.0127	AC074286.1->chr2:178148236-178257419:-,MTX2->chr2:177134123-177202753:+,metaxin_2	NCIH1792_LUNG	0.01	0.4	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000496
NCIH1792_LUNG	AP003900.6--AC008132.1	1	1	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	0	5	1	0.29	0.0127	0.0127	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NCIH1792_LUNG	0.29	1	0.0254	TRUE	0	0	0	13	0	TRUE	ACH-000496
NCIH1792_LUNG	CUX1--CDHR3	1	1	CUX1	1415	chr7:101459373:+	CDHR3	65789	chr7:105552929:+	ONLY_REF_SPLICE	NO	12	10	0.14	0.17	0.0127	0.0127	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,CDHR3->cadherin_related_family_member_3,chr7:105517242-105676877:+	NCIH1792_LUNG	0.14	0.17	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000496
NCIH1792_LUNG	FAM208B--GDI2	1	1	FAM208B	12206	chr10:5766496:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	97	730	0.02	0	0.0127	0.0127	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	NCIH1792_LUNG	0	0.02	0.0254	FALSE	0	0	0	2	0	FALSE	ACH-000496
NCIH1792_LUNG	FNBP4--NUP160	1	1	FNBP4	2468	chr11:47786822:-	NUP160	29772	chr11:47859175:-	ONLY_REF_SPLICE	YES	53	87	0.04	0.02	0.0127	0.0127	LOCAL_REARRANGEMENT:-:[10644],FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,NUP160->chr11:47799639-47870107:-,nucleoporin_160kDa	NCIH1792_LUNG	0.02	0.04	0.0254	TRUE	0	0	0	6	0	FALSE	ACH-000496
NCIH1792_LUNG	TRAF2--TSPAN1	1	1	TRAF2	8092	chr9:139794972:+	TSPAN1	26921	chr1:46650266:+	ONLY_REF_SPLICE	YES	59	21	0.03	0.09	0.0127	0.0127	TRAF2->TNF_receptor_associated_factor_2,chr9:139776364-139821059:+,TSPAN1->Oncogene{Bushman},chr1:46640745-46651630:+,tetraspanin_1	NCIH1792_LUNG	0.03	0.09	0.0254	TRUE	0	0	0	1	0	FALSE	ACH-000496
RERFLCSQ1_LUNG	COL1A1--COL7A1	141	3	COL1A1	13840	chr17:48265935:-	COL7A1	33641	chr3:48621185:-	INCL_NON_REF_SPLICE	NO	1955	148	0.07	0.49	1.3648	0.029	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	RERFLCSQ1_LUNG	0.07	0.49	1.3938	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	TIMM23B--LINC00843	111	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0744	0.2226	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RERFLCSQ1_LUNG	1	1	1.297	TRUE	508	994	45	981	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	BACE2--TAPT1	82	22	BACE2	1775	chr21:42540502:+	TAPT1	30540	chr4:16204203:-	ONLY_REF_SPLICE	YES	33	18	0.76	0.85	0.7937	0.2129	BACE2->beta-site_APP-cleaving_enzyme_2,chr21:42539728-42654445:+,TAPT1->chr4:16162128-16229033:-,transmembrane_anterior_posterior_transformation_1	RERFLCSQ1_LUNG	0.76	0.85	1.0066	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	RNASE10--PTGR1	78	21	RNASE10	1483	chr14:20974178:+	PTGR1	16126	chr9:114337122:-	ONLY_REF_SPLICE	YES	0	11	1	0.9	0.755	0.2033	GTEx_FI:{Liver=[count:3=pct:2.5],Lung=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Small_Intestine=[count:1=pct:1.8],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Visceral_(Omentum)=2,Lung=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1},RNASE10->Oncogene{Bushman},chr14:20973696-20979328:+,ribonuclease_A_family_member_10_(inactive),PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	RERFLCSQ1_LUNG	0.9	1	0.9583	TRUE	9	1	0	6	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RP11-680G10.1--GSE1	58	21	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.5614	0.2033	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RERFLCSQ1_LUNG	1	1	0.7647	TRUE	458	1351	185	561	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RP11-680G10.1--GSE1	60	11	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	22	1	0.76	0.5808	0.1065	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RERFLCSQ1_LUNG	0.76	1	0.6873	TRUE	465	1949	224	605	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	TIMM23--RP11-464F9.1	58	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	205	5	0.22	0.92	0.5614	0.0097	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RERFLCSQ1_LUNG	0.22	0.92	0.5711	TRUE	519	3926	326	965	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	CNPY3--GLTSCR1L	54	16	CNPY3	3718	chr6:42903408:+	GLTSCR1L	17089	chr6:42819830:+	ONLY_REF_SPLICE	YES	131	9	0.35	0.89	0.5227	0.1549	LOCAL_REARRANGEMENT:+:[60640],CNPY3->canopy_FGF_signaling_regulator_3,chr6:42896938-42907025:+,GLTSCR1L->GLTSCR1_like,chr6:42749765-42836298:+	RERFLCSQ1_LUNG	0.35	0.89	0.6776	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	CTD-2008L17.1--RP11-456O19.2	44	15	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	2	0	0.97	1	0.4259	0.1452	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	RERFLCSQ1_LUNG	0.97	1	0.5711	FALSE	20	187	4	79	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	CD63--TGFBI	25	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.242	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	RERFLCSQ1_LUNG	1	1	0.242	TRUE	0	0	0	14	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	MT-TA--MT-TC	23	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2226	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCSQ1_LUNG	1	1	0.2226	FALSE	462	80	0	856	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	C15orf57--CBX3	15	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	60	46	0.32	0.38	0.1452	0.1258	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RERFLCSQ1_LUNG	0.32	0.38	0.271	TRUE	267	562	48	632	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	AP000525.9--LA16c-60G3.6	16	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	6	0	0.75	1	0.1549	0.0194	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	RERFLCSQ1_LUNG	0.75	1	0.1743	TRUE	0	42	0	133	42	FALSE	ACH-000442
RERFLCSQ1_LUNG	IGFBP7--KRT17	13	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1258	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	RERFLCSQ1_LUNG	1	1	0.1258	TRUE	0	0	0	9	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	VPS8--EPHA6	12	4	VPS8	48432	chr3:184658031:+	EPHA6	66214	chr3:96585669:+	ONLY_REF_SPLICE	YES	100	2	0.14	0.89	0.1162	0.0387	VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+,EPHA6->EPH_receptor_A6,chr3:96533425-97471304:+	RERFLCSQ1_LUNG	0.14	0.89	0.1549	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	BACE2--TAPT1	10	11	BACE2	1775	chr21:42540502:+	TAPT1	32725	chr4:16193146:-	ONLY_REF_SPLICE	YES	33	31	0.39	0.4	0.0968	0.1065	BACE2->beta-site_APP-cleaving_enzyme_2,chr21:42539728-42654445:+,TAPT1->chr4:16162128-16229033:-,transmembrane_anterior_posterior_transformation_1	RERFLCSQ1_LUNG	0.39	0.4	0.2033	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	BCAR3--RP11-488P3.1	11	3	BCAR3	8673	chr1:94140170:-	RP11-488P3.1	30475	chr1:94219902:-	ONLY_REF_SPLICE	YES	72	0	0.16	1	0.1065	0.029	NEIGHBORS_OVERLAP:-:-:[22520],BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,RP11-488P3.1->chr1:94218480-94241000:-	RERFLCSQ1_LUNG	0.16	1	0.1355	FALSE	0	0	0	3	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	CTD-2008L17.1--RP11-456O19.2	9	5	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	2	3	0.88	0.82	0.0871	0.0484	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	RERFLCSQ1_LUNG	0.82	0.88	0.1355	FALSE	33	240	4	98	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	BCAR3--RP11-488P3.1	9	1	BCAR3	2227	chr1:94311123:-	RP11-488P3.1	30475	chr1:94219902:-	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0871	0.0097	NEIGHBORS_OVERLAP:-:-:[22520],BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,RP11-488P3.1->chr1:94218480-94241000:-	RERFLCSQ1_LUNG	0.91	1	0.0968	FALSE	0	0	0	3	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	FOCAD--RP11-399D6.2	8	3	FOCAD	1518	chr9:20658825:+	RP11-399D6.2	64014	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0774	0.029	FOCAD->chr9:20658308-20995954:+,focadhesin,RP11-399D6.2->chr9:22646199-22824212:+	RERFLCSQ1_LUNG	1	1	0.1064	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	MAPKAPK2--IKBKE	8	2	MAPKAPK2	1565	chr1:206858853:+	IKBKE	24760	chr1:206664152:+	ONLY_REF_SPLICE	YES	99	29	0.09	0.26	0.0774	0.0194	MAPKAPK2->Oncogene{Bushman},chr1:206858289-206907628:+,mitogen-activated_protein_kinase-activated_protein_kinase_2,IKBKE->ArcherDX_panel,FoundationOne_panel,chr1:206643791-206670223:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_epsilon	RERFLCSQ1_LUNG	0.09	0.26	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	SERPINE1--MT-ND4	7	4	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	5958	9521	0	0	0.0678	0.0387	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	RERFLCSQ1_LUNG	0	0	0.1065	FALSE	1	0	0	29	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	FOCAD--DMRTA1	7	3	FOCAD	1518	chr9:20658825:+	DMRTA1	64809	chr9:22451063:+	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0678	0.029	FOCAD->chr9:20658308-20995954:+,focadhesin,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	RERFLCSQ1_LUNG	0.91	1	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	RP11-120D5.1--MID1	7	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	161	0.83	0.06	0.0678	0.029	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RERFLCSQ1_LUNG	0.06	0.83	0.0968	FALSE	16	356	14	466	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	USP13--CASC5	7	3	USP13	21655	chr3:179483636:+	CASC5	51861	chr15:40937195:+	ONLY_REF_SPLICE	YES	107	46	0.09	0.18	0.0678	0.029	USP13->chr3:179370543-179507189:+,ubiquitin_specific_peptidase_13_(isopeptidase_T-3),CASC5->Oncogene{Bushman},cancer_susceptibility_candidate_5,chr15:40886218-40956540:+	RERFLCSQ1_LUNG	0.09	0.18	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	PRR16--CTD-2334D19.1	7	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	17	0	0.35	1	0.0678	0.0194	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	RERFLCSQ1_LUNG	0.35	1	0.0872	FALSE	56	216	12	147	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	C15orf57--CBX3	5	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	55	47	0.2	0.23	0.0484	0.0871	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RERFLCSQ1_LUNG	0.2	0.23	0.1355	TRUE	267	562	48	632	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	HSP90AB1--MT-RNR2	7	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2341	0	0	1	0.0678	0.0097	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCSQ1_LUNG	0	1	0.0775	FALSE	13	9	0	364	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	HSP90AB1--MT-RNR2	7	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2357	0	0	1	0.0678	0.0097	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCSQ1_LUNG	0	1	0.0775	FALSE	13	9	0	364	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	IGFBP7--MT-ND4L	6	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0581	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCSQ1_LUNG	1	1	0.0581	FALSE	1	0	0	30	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0581	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFLCSQ1_LUNG	1	1	0.0581	FALSE	292	1546	117	613	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	COL1A1--COL7A1	5	2	COL1A1	14521	chr17:48265254:-	COL7A1	43229	chr3:48611304:-	INCL_NON_REF_SPLICE	NO	2149	303	0	0.02	0.0484	0.0194	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	RERFLCSQ1_LUNG	0	0.02	0.0678	FALSE	0	0	0	1	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RP11-353N4.6--SEC22B	5	2	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	68	469	0.09	0.01	0.0484	0.0194	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	RERFLCSQ1_LUNG	0.01	0.09	0.0678	FALSE	49	42	7	43	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0484	0.0194	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCSQ1_LUNG	0.88	1	0.0678	FALSE	407	2205	196	549	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RP1-34H18.1--NAV3	4	4	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0387	0.0387	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	RERFLCSQ1_LUNG	1	1	0.0774	TRUE	254	575	65	124	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	CTD-2008L17.1--RP11-456O19.2	1	15	CTD-2008L17.1	3828	chr18:53685010:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0097	0.1452	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	RERFLCSQ1_LUNG	1	1	0.1549	FALSE	1	24	0	14	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RP11-123O10.4--GRIP1	4	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0387	0.029	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RERFLCSQ1_LUNG	1	1	0.0677	FALSE	416	2512	207	587	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	FLNA--SERPINE1	4	2	FLNA	16147	chrX:153582519:-	SERPINE1	30861	chr7:100778805:+	INCL_NON_REF_SPLICE	YES	2736	6353	0	0	0.0387	0.0194	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.03%,FLNA->chrX:153576892-153603006:-,filamin_A,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	RERFLCSQ1_LUNG	0	0	0.0581	FALSE	0	0	0	1	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	MT-CO3--MT-ATP6	3	4	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0.0387	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RERFLCSQ1_LUNG	1	1	0.0677	FALSE	189	492	56	216	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	MYL9--MT-CO3	4	0	MYL9	4577	chr20:35177723:+	MT-CO3	8119	chrM:9243:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	RERFLCSQ1_LUNG	1	1	0.0387	FALSE	29	0	0	10	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RP11-358H9.1--RP11-400N13.1	4	0	RP11-358H9.1	2827	chr1:222626082:-	RP11-400N13.1	9106	chr1:222262907:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0387	0	NEIGHBORS[65306],RP11-358H9.1->chr1:222626082-222628047:-,RP11-400N13.1->chr1:222262511-222560776:-	RERFLCSQ1_LUNG	1	1	0.0387	FALSE	0	22	0	9	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	VIM--ACTB	4	0	VIM	2082	chr10:17271339:+	ACTB	15618	chr7:5570234:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	RERFLCSQ1_LUNG	1	1	0.0387	TRUE	0	0	0	9	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	RP11-120D5.1--MID1	3	3	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	2	161	0.75	0.04	0.029	0.029	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RERFLCSQ1_LUNG	0.04	0.75	0.058	FALSE	0	9	0	55	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	CTD-2008L17.1--RP11-456O19.2	2	6	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	13011	chr18:53755642:+	ONLY_REF_SPLICE	YES	2	3	0.8	0.73	0.0194	0.0581	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	RERFLCSQ1_LUNG	0.73	0.8	0.0775	FALSE	0	12	0	8	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	MT-CO3--MT-ATP6	3	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.029	0.0194	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RERFLCSQ1_LUNG	0.56	1	0.0484	FALSE	189	492	56	216	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	MT-CO3--MT-ATP6	3	2	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	8	0	0.38	1	0.029	0.0194	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RERFLCSQ1_LUNG	0.38	1	0.0484	FALSE	189	492	56	216	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	MT-CO3--MT-ATP6	3	2	MT-CO3	1396	chrM:9602:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	5	0	0.5	1	0.029	0.0194	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RERFLCSQ1_LUNG	0.5	1	0.0484	FALSE	189	492	56	216	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RPS6KB1--VMP1	3	2	RPS6KB1	1240	chr17:57970686:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	51	360	0.09	0.01	0.029	0.0194	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	RERFLCSQ1_LUNG	0.01	0.09	0.0484	FALSE	0	9	0	10	6	FALSE	ACH-000442
RERFLCSQ1_LUNG	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.029	0.0097	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCSQ1_LUNG	0.8	1	0.0387	FALSE	515	4851	409	746	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	TPM4--CTD-2231E14.4	3	1	TPM4	10590	chr19:16199930:+	CTD-2231E14.4	21108	chr19:16176915:+	ONLY_REF_SPLICE	YES	2401	0	0	1	0.029	0.0097	LOCAL_REARRANGEMENT:+:[709],TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4,CTD-2231E14.4->chr19:16176547-16177122:+	RERFLCSQ1_LUNG	0	1	0.0387	FALSE	0	0	0	1	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	USP13--CASC5	3	1	USP13	21655	chr3:179483636:+	CASC5	53738	chr15:40939185:+	ONLY_REF_SPLICE	YES	107	45	0.04	0.08	0.029	0.0097	USP13->chr3:179370543-179507189:+,ubiquitin_specific_peptidase_13_(isopeptidase_T-3),CASC5->Oncogene{Bushman},cancer_susceptibility_candidate_5,chr15:40886218-40956540:+	RERFLCSQ1_LUNG	0.04	0.08	0.0387	TRUE	0	0	0	1	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	MAF--RP11-679B19.2	3	0	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	RERFLCSQ1_LUNG	1	1	0.029	TRUE	48	25	3	38	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	MT-TA--MT-TC	3	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCSQ1_LUNG	1	1	0.029	FALSE	462	80	0	856	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RP1-34H18.1--RP11-781A6.1	3	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	RERFLCSQ1_LUNG	1	1	0.029	TRUE	94	160	11	37	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	FOCAD--RP11-399D6.2	2	3	FOCAD	2834	chr9:20684292:+	RP11-399D6.2	64014	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0.029	FOCAD->chr9:20658308-20995954:+,focadhesin,RP11-399D6.2->chr9:22646199-22824212:+	RERFLCSQ1_LUNG	1	1	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	RNASE10--PTGR1	1	7	RNASE10	1483	chr14:20974178:+	PTGR1	17235	chr9:114332489:-	ONLY_REF_SPLICE	YES	0	26	1	0.24	0.0097	0.0678	GTEx_FI:{Liver=[count:3=pct:2.5],Lung=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Small_Intestine=[count:1=pct:1.8],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Visceral_(Omentum)=2,Lung=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1},RNASE10->Oncogene{Bushman},chr14:20973696-20979328:+,ribonuclease_A_family_member_10_(inactive),PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	RERFLCSQ1_LUNG	0.24	1	0.0775	TRUE	2	0	0	3	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RP11-114H21.2--CTB-1I21.1	1	7	RP11-114H21.2	2303	chr5:135840382:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	3	0	0.73	1	0.0097	0.0678	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	RERFLCSQ1_LUNG	0.73	1	0.0775	TRUE	0	0	0	4	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.31	1	0.0194	0.0194	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFLCSQ1_LUNG	0.31	1	0.0388	FALSE	164	806	69	479	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RP11-108K3.1--GLDN	2	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0.0194	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	RERFLCSQ1_LUNG	1	1	0.0388	FALSE	0	30	1	55	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RP11-353N4.6--SEC22B	2	2	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	68	555	0.06	0.01	0.0194	0.0194	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	RERFLCSQ1_LUNG	0.01	0.06	0.0388	FALSE	33	36	9	21	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RP11-6N13.1--CTD-2374C24.1	2	1	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0.0097	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	RERFLCSQ1_LUNG	1	1	0.0291	TRUE	1	1	0	17	1	TRUE	ACH-000442
RERFLCSQ1_LUNG	RPSAP52--HMGA2	2	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	5	117	0.38	0.03	0.0194	0.0097	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	RERFLCSQ1_LUNG	0.03	0.38	0.0291	FALSE	0	59	0	125	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	USP13--CASC5	2	1	USP13	21655	chr3:179483636:+	CASC5	55000	chr15:40942499:+	ONLY_REF_SPLICE	YES	107	44	0.03	0.06	0.0194	0.0097	USP13->chr3:179370543-179507189:+,ubiquitin_specific_peptidase_13_(isopeptidase_T-3),CASC5->Oncogene{Bushman},cancer_susceptibility_candidate_5,chr15:40886218-40956540:+	RERFLCSQ1_LUNG	0.03	0.06	0.0291	TRUE	0	0	0	1	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	BEAN1--C9orf3	2	0	BEAN1	1135	chr16:66461334:+	C9orf3	53601	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	BEAN1->brain_expressed,_associated_with_NEDD4,_1,chr16:66461200-66527432:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	FER--CEP120	2	0	FER	3318	chr5:108103939:+	CEP120	48367	chr5:122734978:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	FER->FER_tyrosine_kinase,chr5:108083523-108532542:+,CEP120->centrosomal_protein_120,chr5:122680579-122759286:-	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	G3BP1--CTD-2410N18.5	2	0	G3BP1	1992	chr5:151151597:+	CTD-2410N18.5	27988	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTD-2410N18.5->chr5:133502861-133561762:-	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	4	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	KIAA0101--PICALM	2	0	KIAA0101	3906	chr15:64673525:-	PICALM	14368	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	KIAA0101->KIAA0101,chr15:64657193-64679886:-,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	KIRREL3--CWF19L2	2	0	KIRREL3	2916	chr11:126870351:-	CWF19L2	37675	chr11:107289013:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	KIRREL3->chr11:126293254-126873355:-,kin_of_IRRE_like_3_(Drosophila),CWF19L2->CWF19-like_2,_cell_cycle_control_(S._pombe),chr11:107197071-107328572:-	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	MAPKAPK2--RASSF5	2	0	MAPKAPK2	1565	chr1:206858853:+	RASSF5	12654	chr1:206711501:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[95673],MAPKAPK2->Oncogene{Bushman},chr1:206858289-206907628:+,mitogen-activated_protein_kinase-activated_protein_kinase_2,RASSF5->Ras_association_domain_family_member_5,chr1:206680879-206762616:+	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	PACSIN2--C1orf112	2	0	PACSIN2	1125	chr22:43411027:-	C1orf112	57641	chr1:169821931:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,C1orf112->chr1:169631245-169823221:+,chromosome_1_open_reading_frame_112	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	RP11-120D5.1--MID1	1	4	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	0	161	1	0.03	0.0097	0.0387	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RERFLCSQ1_LUNG	0.03	1	0.0484	FALSE	2	31	0	60	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RPS6KB1--VMP1	2	0	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	9	0	11	6	TRUE	ACH-000442
RERFLCSQ1_LUNG	SURF1--SURF4	2	0	SURF1	3802	chr9:136220604:-	SURF4	12492	chr9:136231902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_REARRANGEMENT:-:[4773],SURF1->chr9:136218610-136223552:-,surfeit_1,SURF4->chr9:136228325-136242970:-,surfeit_4	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	VPS8--RP11-329B9.1	2	0	VPS8	1083	chr3:184530013:+	RP11-329B9.1	65962	chr3:184483257:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_INVERSION:+:-:[38988],VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+,RP11-329B9.1->chr3:184474177-184490943:-	RERFLCSQ1_LUNG	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	CTD-2337A12.1--CAST	1	3	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	88	1	0.04	0.0097	0.029	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	RERFLCSQ1_LUNG	0.04	1	0.0387	TRUE	347	1186	183	220	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	COL8A2--TRAPPC3	1	2	COL8A2	2209	chr1:36581309:-	TRAPPC3	15493	chr1:36603579:-	ONLY_REF_SPLICE	YES	0	211	1	0.01	0.0097	0.0194	LOCAL_REARRANGEMENT:-:[11352],COL8A2->chr1:36560837-36590821:-,collagen_type_VIII_alpha_2,TRAPPC3->chr1:36602173-36615098:-,trafficking_protein_particle_complex_3	RERFLCSQ1_LUNG	0.01	1	0.0291	FALSE	0	0	0	1	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0097	0.0194	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	RERFLCSQ1_LUNG	1	1	0.0291	FALSE	0	19	0	46	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	1259	chrX:11129003:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	161	0.3	0.02	0.0097	0.0194	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RERFLCSQ1_LUNG	0.02	0.3	0.0291	FALSE	0	0	0	1	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RP11-353N4.6--SEC22B	1	2	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	70	555	0.04	0.01	0.0097	0.0194	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	RERFLCSQ1_LUNG	0.01	0.04	0.0291	FALSE	33	36	9	21	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RP11-353N4.6--SEC22B	1	2	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	70	469	0.04	0.01	0.0097	0.0194	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	RERFLCSQ1_LUNG	0.01	0.04	0.0291	FALSE	49	42	7	43	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RPS6KB1--VMP1	1	2	RPS6KB1	5427	chr17:57990165:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	97	360	0.03	0.01	0.0097	0.0194	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	RERFLCSQ1_LUNG	0.01	0.03	0.0291	FALSE	0	1	0	1	1	FALSE	ACH-000442
RERFLCSQ1_LUNG	CNPY3--GLTSCR1L	1	1	CNPY3	1522	chr6:42897459:+	GLTSCR1L	17089	chr6:42819830:+	ONLY_REF_SPLICE	NO	214	9	0.01	0.18	0.0097	0.0097	LOCAL_REARRANGEMENT:+:[60640],CNPY3->canopy_FGF_signaling_regulator_3,chr6:42896938-42907025:+,GLTSCR1L->GLTSCR1_like,chr6:42749765-42836298:+	RERFLCSQ1_LUNG	0.01	0.18	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	FOCAD--DMRTA1	1	1	FOCAD	1151	chr9:20658458:+	DMRTA1	64809	chr9:22451063:+	ONLY_REF_SPLICE	YES	4	1	0.33	0.67	0.0097	0.0097	FOCAD->chr9:20658308-20995954:+,focadhesin,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	RERFLCSQ1_LUNG	0.33	0.67	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
RERFLCSQ1_LUNG	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	9	0	0.18	1	0.0097	0.0097	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFLCSQ1_LUNG	0.18	1	0.0194	FALSE	125	705	46	456	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	RPS6KB1--VMP1	1	1	RPS6KB1	5427	chr17:57990165:+	VMP1	37383	chr17:57895073:+	ONLY_REF_SPLICE	YES	97	225	0.02	0.01	0.0097	0.0097	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	RERFLCSQ1_LUNG	0.01	0.02	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000442
RERFLCSQ1_LUNG	ZNF430--TMEM71	1	1	ZNF430	4006	chr19:21216990:+	TMEM71	23079	chr8:133740232:-	ONLY_REF_SPLICE	NO	2	0	0.5	1	0.0097	0.0097	ZNF430->chr19:21203426-21242856:+,zinc_finger_protein_430,TMEM71->chr8:133697253-133772958:-,transmembrane_protein_71	RERFLCSQ1_LUNG	0.5	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000442
DMS273_LUNG	FHL3--POGZ	99	12	FHL3	1168	chr1:38471111:-	POGZ	22683	chr1:151384872:-	ONLY_REF_SPLICE	YES	1	136	0.99	0.45	1.197	0.1451	FHL3->chr1:38462442-38471278:-,four_and_a_half_LIM_domains_3,POGZ->chr1:151375200-151431941:-,pogo_transposable_element_with_ZNF_domain	DMS273_LUNG	0.45	0.99	1.3421	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	MT-ND6--MT-TE	57	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6892	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS273_LUNG	1	1	0.6892	FALSE	499	1288	110	792	0	FALSE	ACH-000749
DMS273_LUNG	TIMM23B--LINC00843	48	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.5804	0.3144	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DMS273_LUNG	0.99	1	0.8948	TRUE	508	994	45	981	0	FALSE	ACH-000749
DMS273_LUNG	FHL3--POGZ	50	14	FHL3	1250	chr1:38471029:-	POGZ	22683	chr1:151384872:-	ONLY_REF_SPLICE	YES	2	136	0.97	0.32	0.6046	0.1693	FHL3->chr1:38462442-38471278:-,four_and_a_half_LIM_domains_3,POGZ->chr1:151375200-151431941:-,pogo_transposable_element_with_ZNF_domain	DMS273_LUNG	0.32	0.97	0.7739	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	MT-ND6--MT-TE	44	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.532	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS273_LUNG	1	1	0.532	FALSE	499	1288	110	792	0	FALSE	ACH-000749
DMS273_LUNG	MT-TA--MT-TC	38	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4595	0.0242	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DMS273_LUNG	1	1	0.4837	FALSE	462	80	0	856	0	FALSE	ACH-000749
DMS273_LUNG	AC104389.28--HBE1	35	6	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	1	14	0.98	0.75	0.4232	0.0725	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DMS273_LUNG	0.75	0.98	0.4957	TRUE	0	16	0	53	13	FALSE	ACH-000749
DMS273_LUNG	TIMM23--RP11-464F9.1	31	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	523	5	0.06	0.88	0.3748	0.0484	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DMS273_LUNG	0.06	0.88	0.4232	TRUE	519	3926	326	965	0	FALSE	ACH-000749
DMS273_LUNG	HSPBP1--ZSWIM6	31	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3748	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	DMS273_LUNG	1	1	0.3748	TRUE	47	32	1	28	0	FALSE	ACH-000749
DMS273_LUNG	AC104389.28--HBE1	20	37	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	7	14	0.89	0.8	0.2418	0.4474	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DMS273_LUNG	0.8	0.89	0.6892	TRUE	0	48	0	65	48	FALSE	ACH-000749
DMS273_LUNG	ZFPM2--RP11-642D21.2	23	18	ZFPM2	15175	chr8:106801152:+	RP11-642D21.2	26112	chr8:106698022:-	INCL_NON_REF_SPLICE	YES	79	0	0.34	1	0.2781	0.2176	NEIGHBORS_OVERLAP:+:-:[23413],ZFPM2->chr8:106330920-106816760:+,zinc_finger_protein,_FOG_family_member_2,RP11-642D21.2->chr8:106674580-106697993:-	DMS273_LUNG	0.34	1	0.4957	FALSE	0	0	0	1	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND4--MT-ND4L	23	0	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2781	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS273_LUNG	1	1	0.2781	FALSE	344	827	44	306	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND6--MT-TE	21	0	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2539	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS273_LUNG	1	1	0.2539	FALSE	499	1288	110	792	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND4--MT-ATP8	18	0	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2176	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DMS273_LUNG	1	1	0.2176	FALSE	231	217	16	283	0	FALSE	ACH-000749
DMS273_LUNG	MT-TA--MT-TC	18	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2176	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DMS273_LUNG	1	1	0.2176	FALSE	462	80	0	856	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND6--MT-TE	14	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1693	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS273_LUNG	1	1	0.1693	FALSE	499	1288	110	792	0	FALSE	ACH-000749
DMS273_LUNG	ZFPM2--CASC11	13	3	ZFPM2	12920	chr8:106646585:+	CASC11	26149	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	32	0	0.33	1	0.1572	0.0363	ZFPM2->chr8:106330920-106816760:+,zinc_finger_protein,_FOG_family_member_2,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	DMS273_LUNG	0.33	1	0.1935	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	AC104389.28--HBE1	3	37	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	7	0	0.85	1	0.0363	0.4474	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DMS273_LUNG	0.85	1	0.4837	TRUE	0	35	0	55	35	FALSE	ACH-000749
DMS273_LUNG	MT-ND4--MT-ND4L	9	12	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	7	0	0.75	1	0.1088	0.1451	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS273_LUNG	0.75	1	0.2539	FALSE	344	821	44	306	0	FALSE	ACH-000749
DMS273_LUNG	RP11-680G10.1--GSE1	11	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	68	1	0.18	0.133	0.0484	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DMS273_LUNG	0.18	1	0.1814	TRUE	465	1949	224	605	0	FALSE	ACH-000749
DMS273_LUNG	RP11-603B24.1--HERC2P3	8	9	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0967	0.1088	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	DMS273_LUNG	1	1	0.2055	TRUE	27	10	1	20	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND4--MT-ND4L	5	20	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	26	0	0.49	1	0.0605	0.2418	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS273_LUNG	0.49	1	0.3023	FALSE	344	826	44	306	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND4--MT-ND4L	5	19	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	15	0	0.62	1	0.0605	0.2297	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS273_LUNG	0.62	1	0.2902	FALSE	344	826	44	306	0	FALSE	ACH-000749
DMS273_LUNG	RP11-123O10.4--GRIP1	8	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0967	0.0846	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DMS273_LUNG	1	1	0.1813	FALSE	416	2512	207	587	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND6--MT-TE	9	0	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1088	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS273_LUNG	1	1	0.1088	FALSE	499	1288	110	792	0	FALSE	ACH-000749
DMS273_LUNG	RP11-680G10.1--GSE1	7	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	23	1	0.39	0.0846	0.0967	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DMS273_LUNG	0.39	1	0.1813	TRUE	458	1351	185	561	0	FALSE	ACH-000749
DMS273_LUNG	C15orf57--CBX3	7	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	93	69	0.12	0.16	0.0846	0.0725	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DMS273_LUNG	0.12	0.16	0.1571	TRUE	267	562	48	632	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND4--MT-ND4L	4	18	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	9	0	0.71	1	0.0484	0.2176	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS273_LUNG	0.71	1	0.266	FALSE	344	826	44	306	0	FALSE	ACH-000749
DMS273_LUNG	MT-TA--MT-TC	8	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0967	0.0121	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DMS273_LUNG	1	1	0.1088	FALSE	462	80	0	856	0	FALSE	ACH-000749
DMS273_LUNG	ZNF654--HMGB2	7	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0846	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	DMS273_LUNG	1	1	0.0846	TRUE	0	0	0	518	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND4--MT-ND4L	5	7	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	17805	0	0	1	0.0605	0.0846	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS273_LUNG	0	1	0.1451	FALSE	328	800	43	304	0	FALSE	ACH-000749
DMS273_LUNG	ZFPM2--RP11-642D21.2	3	15	ZFPM2	15175	chr8:106801152:+	RP11-642D21.2	26980	chr8:106697154:-	ONLY_REF_SPLICE	YES	79	0	0.19	1	0.0363	0.1814	NEIGHBORS_OVERLAP:+:-:[23413],ZFPM2->chr8:106330920-106816760:+,zinc_finger_protein,_FOG_family_member_2,RP11-642D21.2->chr8:106674580-106697993:-	DMS273_LUNG	0.19	1	0.2177	FALSE	0	0	0	1	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND4--MT-ND4L	5	6	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1205	0	0.01	1	0.0605	0.0725	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS273_LUNG	0.01	1	0.133	FALSE	344	827	44	306	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND4--MT-ND4L	6	1	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	37	0	0.16	1	0.0725	0.0121	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS273_LUNG	0.16	1	0.0846	FALSE	344	826	44	306	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND6--MT-TE	6	1	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0725	0.0121	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS273_LUNG	0.78	1	0.0846	FALSE	499	1288	110	792	0	FALSE	ACH-000749
DMS273_LUNG	SMAP2--RFX5	5	3	SMAP2	13610	chr1:40882763:+	RFX5	21131	chr1:151317669:-	INCL_NON_REF_SPLICE	YES	1306	1374	0.01	0.01	0.0605	0.0363	SMAP2->chr1:40810522-40888998:+,small_ArfGAP2,RFX5->Oncogene{Bushman},chr1:151313116-151319833:-,regulatory_factor_X5	DMS273_LUNG	0.01	0.01	0.0968	FALSE	0	0	0	1	0	FALSE	ACH-000749
DMS273_LUNG	AC104389.28--HBE1	4	6	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0484	0.0725	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DMS273_LUNG	0.91	1	0.1209	TRUE	0	11	0	26	8	FALSE	ACH-000749
DMS273_LUNG	C15orf57--CBX3	4	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	91	73	0.08	0.1	0.0484	0.0484	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DMS273_LUNG	0.08	0.1	0.0968	TRUE	267	562	48	632	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0605	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DMS273_LUNG	1	1	0.0605	FALSE	230	193	14	283	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0605	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS273_LUNG	1	1	0.0605	FALSE	344	821	44	306	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0605	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS273_LUNG	1	1	0.0605	FALSE	499	1288	110	792	0	FALSE	ACH-000749
DMS273_LUNG	AC104389.28--HBE1	4	2	AC104389.28	1093	chr11:5526790:-	HBE1	13750	chr11:5291386:-	INCL_NON_REF_SPLICE	YES	0	14	1	0.3	0.0484	0.0242	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DMS273_LUNG	0.3	1	0.0726	TRUE	0	16	0	53	13	FALSE	ACH-000749
DMS273_LUNG	RP11-120D5.1--MID1	3	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	23	0.8	0.26	0.0363	0.0605	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	DMS273_LUNG	0.26	0.8	0.0968	FALSE	16	356	14	466	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND3--MT-ATP8	4	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DMS273_LUNG	1	1	0.0484	FALSE	351	233	23	137	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS273_LUNG	1	1	0.0484	FALSE	499	1288	110	792	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND4--MT-ND4L	3	3	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	24	0	0.2	1	0.0363	0.0363	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS273_LUNG	0.2	1	0.0726	FALSE	344	826	44	306	0	FALSE	ACH-000749
DMS273_LUNG	AC104389.28--HBE1	3	2	AC104389.28	1084	chr11:5526799:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	0	14	1	0.26	0.0363	0.0242	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DMS273_LUNG	0.26	1	0.0605	TRUE	0	16	0	53	13	FALSE	ACH-000749
DMS273_LUNG	SETDB1--RP11-69E11.4	3	2	SETDB1	4119	chr1:150902594:+	RP11-69E11.4	27852	chr1:39994836:-	ONLY_REF_SPLICE	YES	1632	132	0	0.04	0.0363	0.0242	SETDB1->SET_domain_bifurcated_1,chr1:150898739-150937213:+,RP11-69E11.4->chr1:39987952-40011859:-	DMS273_LUNG	0	0.04	0.0605	FALSE	0	0	0	1	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	23357	6	0	0.4	0.0363	0.0121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DMS273_LUNG	0	0.4	0.0484	FALSE	231	217	16	283	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND6--MT-TE	3	1	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.57	1	0.0363	0.0121	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS273_LUNG	0.57	1	0.0484	FALSE	499	1288	110	792	0	FALSE	ACH-000749
DMS273_LUNG	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0363	0.0121	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DMS273_LUNG	0.8	1	0.0484	FALSE	292	1546	117	613	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1534	chrM:11293:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DMS273_LUNG	1	1	0.0363	FALSE	231	217	16	283	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS273_LUNG	1	1	0.0363	FALSE	344	821	44	306	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS273_LUNG	1	1	0.0363	FALSE	344	826	44	306	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS273_LUNG	1	1	0.0363	FALSE	499	1288	110	792	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS273_LUNG	1	1	0.0363	FALSE	499	1288	110	792	0	FALSE	ACH-000749
DMS273_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS273_LUNG	1	1	0.0363	FALSE	499	1288	110	792	0	FALSE	ACH-000749
DMS273_LUNG	FHL3--POGZ	2	3	FHL3	1168	chr1:38471111:-	POGZ	24455	chr1:151381304:-	ONLY_REF_SPLICE	YES	1	340	0.83	0.01	0.0242	0.0363	FHL3->chr1:38462442-38471278:-,four_and_a_half_LIM_domains_3,POGZ->chr1:151375200-151431941:-,pogo_transposable_element_with_ZNF_domain	DMS273_LUNG	0.01	0.83	0.0605	FALSE	0	0	0	1	0	FALSE	ACH-000749
DMS273_LUNG	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.23	1	0.0242	0.0121	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DMS273_LUNG	0.23	1	0.0363	FALSE	125	705	46	456	0	FALSE	ACH-000749
DMS273_LUNG	PDIA4--RP11-642D21.1	2	1	PDIA4	7986	chr7:148705251:-	RP11-642D21.1	17373	chr8:106690708:+	ONLY_REF_SPLICE	YES	1172	0	0	1	0.0242	0.0121	PDIA4->chr7:148700154-148725733:-,protein_disulfide_isomerase_family_A_member_4,RP11-642D21.1->chr8:106682219-106691259:+	DMS273_LUNG	0	1	0.0363	FALSE	0	0	0	1	0	FALSE	ACH-000749
DMS273_LUNG	ABCA5--STMN1	2	0	ABCA5	1193	chr17:67323193:-	STMN1	52047	chr1:26231229:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-,STMN1->chr1:26210672-26233482:-,stathmin_1	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	ELAVL1--CTD-2619J13.14	2	0	ELAVL1	3505	chr19:8056528:-	CTD-2619J13.14	18770	chr19:58918137:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-,CTD-2619J13.14->chr19:58915605-58919851:-	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	FHL3--POGZ	1	4	FHL3	1250	chr1:38471029:-	POGZ	24455	chr1:151381304:-	ONLY_REF_SPLICE	YES	2	340	0.71	0.01	0.0121	0.0484	FHL3->chr1:38462442-38471278:-,four_and_a_half_LIM_domains_3,POGZ->chr1:151375200-151431941:-,pogo_transposable_element_with_ZNF_domain	DMS273_LUNG	0.01	0.71	0.0605	FALSE	0	0	0	1	0	FALSE	ACH-000749
DMS273_LUNG	FMNL2--ARL5A	2	0	FMNL2	1484	chr2:153192234:+	ARL5A	37661	chr2:152671713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	FMNL2->chr2:153191751-153506348:+,formin_like_2,ARL5A->ADP_ribosylation_factor_like_GTPase_5A,chr2:152645498-152685006:-	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	KIF22--C17orf53	2	0	KIF22	6675	chr16:29811369:+	C17orf53	22290	chr17:42235201:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	KIF22->chr16:29802040-29816706:+,kinesin_family_member_22,C17orf53->chr17:42219274-42239844:+,chromosome_17_open_reading_frame_53	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	PABPC4--VPS72	2	0	PABPC4	9730	chr1:40030095:-	VPS72	21212	chr1:151150621:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	PABPC4->chr1:40026488-40042462:-,poly(A)_binding_protein_cytoplasmic_4,VPS72->chr1:151142463-151167797:-,vacuolar_protein_sorting_72_homolog	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	PNN--EWSR1	2	0	PNN	5195	chr14:39648666:+	EWSR1	26997	chr22:29688126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	PNN->chr14:39644387-39652422:+,pinin,_desmosome_associated_protein,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	PTRH2--PABPC1	2	0	PTRH2	1256	chr17:57784732:-	PABPC1	24175	chr8:101715587:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	RCC1--GABPB2	2	0	RCC1	2175	chr1:28834672:+	GABPB2	21386	chr1:151060666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GABPB2->GA_binding_protein_transcription_factor_beta_subunit_2,chr1:151043054-151098018:+	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	RLF--TARS2	2	0	RLF	5837	chr1:40668286:+	TARS2	26848	chr1:150476811:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,TARS2->chr1:150459887-150480078:+,threonyl-tRNA_synthetase_2,_mitochondrial_(putative)	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	RP5-884C9.2--SMAP2	2	0	RP5-884C9.2	1301	chr1:38513286:+	SMAP2	9746	chr1:40827972:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RP5-884C9.2->chr1:38512986-38584697:+,SMAP2->chr1:40810522-40888998:+,small_ArfGAP2	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	SEC24B-AS1--KIAA0947	2	0	SEC24B-AS1	2139	chr4:110352848:-	KIAA0947	39576	chr5:5476086:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	SEC24B-AS1->SEC24B_antisense_RNA_1,chr4:110268631-110354973:-,KIAA0947->chr5:5420777-5490347:+	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	ZNF793--FAM35A	2	0	ZNF793	2465	chr19:37999305:+	FAM35A	35570	chr10:88950241:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	ZNF793->chr19:37997841-38039664:+,zinc_finger_protein_793,FAM35A->chr10:88853918-88951225:+,family_with_sequence_similarity_35_member_A	DMS273_LUNG	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000749
DMS273_LUNG	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.15	1	0.0121	0.0363	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DMS273_LUNG	0.15	1	0.0484	FALSE	164	806	69	479	0	FALSE	ACH-000749
DMS273_LUNG	NR3C1--ARHGAP26	1	2	NR3C1	10508	chr5:142779221:-	ARHGAP26	52946	chr5:142500553:+	ONLY_REF_SPLICE	YES	152	25	0.02	0.11	0.0121	0.0242	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[48920],NR3C1->chr5:142657496-142815077:-,nuclear_receptor_subfamily_3_group_C_member_1,ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+	DMS273_LUNG	0.02	0.11	0.0363	TRUE	0	0	0	1	0	FALSE	ACH-000749
DMS273_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	11	23	0.21	0.12	0.0121	0.0242	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	DMS273_LUNG	0.12	0.21	0.0363	FALSE	0	48	1	163	0	FALSE	ACH-000749
DMS273_LUNG	ZNF738--DAP3	1	2	ZNF738	7035	chr19:21558766:+	DAP3	28866	chr1:155708400:+	ONLY_REF_SPLICE	YES	116	39	0.03	0.07	0.0121	0.0242	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	DMS273_LUNG	0.03	0.07	0.0363	TRUE	0	0	0	4	0	FALSE	ACH-000749
DMS273_LUNG	CTPS1--PSMD4	1	1	CTPS1	1495	chr1:41445501:+	PSMD4	32313	chr1:151237870:+	ONLY_REF_SPLICE	NO	1481	7228	0	0	0.0121	0.0121	CTPS1->CTP_synthase_1,chr1:41445007-41478235:+,PSMD4->chr1:151227179-151239955:+,proteasome_26S_subunit,_non-ATPase_4	DMS273_LUNG	0	0	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000749
DMS273_LUNG	CTPS1--PSMD4	1	1	CTPS1	1495	chr1:41445501:+	PSMD4	30833	chr1:151236390:+	ONLY_REF_SPLICE	NO	1481	7574	0	0	0.0121	0.0121	CTPS1->CTP_synthase_1,chr1:41445007-41478235:+,PSMD4->chr1:151227179-151239955:+,proteasome_26S_subunit,_non-ATPase_4	DMS273_LUNG	0	0	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000749
DMS273_LUNG	GABPB2--RP1-63P18.2	1	1	GABPB2	5004	chr1:151063049:+	RP1-63P18.2	21802	chr1:41029206:+	ONLY_REF_SPLICE	YES	314	0	0.01	1	0.0121	0.0121	GABPB2->GA_binding_protein_transcription_factor_beta_subunit_2,chr1:151043054-151098018:+,RP1-63P18.2->chr1:41029206-41029331:+	DMS273_LUNG	0.01	1	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000749
DMS273_LUNG	PIP5K1A--ANXA9	1	1	PIP5K1A	3270	chr1:151186023:+	ANXA9	27112	chr1:150959078:+	ONLY_REF_SPLICE	YES	3004	14	0	0.12	0.0121	0.0121	PIP5K1A->chr1:151170425-151222012:+,phosphatidylinositol-4-phosphate_5-kinase_type_1_alpha,ANXA9->annexin_A9,chr1:150954493-150968110:+	DMS273_LUNG	0	0.12	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000749
DMS273_LUNG	SLC25A13--SHFM1	1	1	SLC25A13	5666	chr7:95864114:-	SHFM1	29567	chr7:96324203:-	ONLY_REF_SPLICE	YES	725	1236	0	0	0.0121	0.0121	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Spleen=1},SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	DMS273_LUNG	0	0	0.0242	FALSE	0	2	0	1	1	FALSE	ACH-000749
DMS273_LUNG	SPOCK1--ETV1	1	1	SPOCK1	11253	chr5:136403404:-	ETV1	34185	chr7:13978871:-	ONLY_REF_SPLICE	NO	24	47	0.08	0.04	0.0121	0.0121	SPOCK1->chr5:136310987-136934068:-,sparc/osteonectin,_cwcv_and_kazal-like_domains_proteoglycan_(testican)_1,ETV1->ArcherDX_panel,ETS_variant_1,FoundationOne_panel,Oncogene{Bushman},chr7:13930853-14031050:-	DMS273_LUNG	0.04	0.08	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000749
DMS273_LUNG	UTP11L--HORMAD1	1	1	UTP11L	4655	chr1:38483442:+	HORMAD1	21953	chr1:150676819:-	ONLY_REF_SPLICE	YES	4244	10	0	0.17	0.0121	0.0121	UTP11L->chr1:38474930-38490496:+,HORMAD1->HORMA_domain_containing_1,chr1:150670536-150693364:-	DMS273_LUNG	0	0.17	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000749
NCIH292_LUNG	TIMM23B--LINC00843	133	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2279	0.2031	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH292_LUNG	1	1	1.431	TRUE	508	994	45	981	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	109	36	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1201	0	0.11	1	1.0064	0.3324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.11	1	1.3388	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-TA--MT-TC	105	11	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9694	0.1016	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH292_LUNG	1	1	1.071	FALSE	462	80	0	856	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	13	310	MT-ND4	1741	chrM:11500:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	6361	0	0.05	1	0.12	2.8621	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.05	1	2.9821	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	5	318	MT-ND4	2290	chrM:12049:+	MT-ND4L	5392	chrM:10483:+	INCL_NON_REF_SPLICE	YES	35	0	0.9	1	0.0462	2.936	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.9	1	2.9822	FALSE	268	700	35	287	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	5	306	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	754	0	0.29	1	0.0462	2.8252	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.29	1	2.8714	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	7	298	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	40	0	0.88	1	0.0646	2.7513	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.88	1	2.8159	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	313	MT-ND4	2041	chrM:11800:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	NO	17790	0	0.02	1	0.0277	2.8898	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.02	1	2.9175	FALSE	344	826	44	305	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	9	288	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	28	0	0.91	1	0.0831	2.659	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.91	1	2.7421	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	10	282	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	26	0	0.92	1	0.0923	2.6036	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.92	1	2.6959	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	310	MT-ND4	1724	chrM:11483:+	MT-ND4L	5482	chrM:10573:+	INCL_NON_REF_SPLICE	YES	5602	0	0.05	1	0.0277	2.8621	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.05	1	2.8898	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	TIMM23--RP11-464F9.1	80	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	191	6	0.3	0.93	0.7386	0.0092	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH292_LUNG	0.3	0.93	0.7478	TRUE	519	3926	326	965	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	306	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	855	0	0.27	1	0.0277	2.8252	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.27	1	2.8529	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	5	298	MT-ND4	1220	chrM:10979:+	MT-ND4L	5536	chrM:10627:+	INCL_NON_REF_SPLICE	YES	121	0	0.71	1	0.0462	2.7513	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.71	1	2.7975	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	305	MT-ND4	1483	chrM:11242:+	MT-ND4L	5492	chrM:10583:+	INCL_NON_REF_SPLICE	YES	699	0	0.31	1	0.0277	2.816	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.31	1	2.8437	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	4	300	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	121	0	0.72	1	0.0369	2.7698	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.72	1	2.8067	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	6	288	MT-ND4	1159	chrM:10918:+	MT-ND4L	5503	chrM:10594:+	INCL_NON_REF_SPLICE	YES	33	0	0.9	1	0.0554	2.659	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.9	1	2.7144	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	299	MT-ND4	1263	chrM:11022:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	129	0	0.7	1	0.0277	2.7606	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.7	1	2.7883	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	299	MT-ND4	1213	chrM:10972:+	MT-ND4L	5376	chrM:10467:+	INCL_NON_REF_SPLICE	YES	123	0	0.71	1	0.0277	2.7606	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.71	1	2.7883	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	5	287	MT-ND4	1147	chrM:10906:+	MT-ND4L	5504	chrM:10595:+	INCL_NON_REF_SPLICE	YES	26	0	0.92	1	0.0462	2.6498	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.92	1	2.696	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	6	282	MT-ND4	1112	chrM:10871:+	MT-ND4L	5464	chrM:10555:+	INCL_NON_REF_SPLICE	YES	25	0	0.92	1	0.0554	2.6036	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.92	1	2.659	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	74	10	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6832	0.0923	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	1	1	0.7755	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	4	285	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	26	0	0.92	1	0.0369	2.6313	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.92	1	2.6682	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	288	MT-ND4	1170	chrM:10929:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	NO	33	0	0.9	1	0.0277	2.659	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.9	1	2.6867	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	19	217	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	35	0	0.87	1	0.1754	2.0035	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.87	1	2.1789	FALSE	344	821	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	63	36	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	120	0	0.45	1	0.5817	0.3324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.45	1	0.9141	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	19	202	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	8506	0	0.03	1	0.1754	1.865	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.03	1	2.0404	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	5	251	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	37	0	0.87	1	0.0462	2.3174	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.87	1	2.3636	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	6	242	MT-ND4	1079	chrM:10838:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	38	0	0.87	1	0.0554	2.2343	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.87	1	2.2897	FALSE	344	821	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	13	196	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	25	0	0.89	1	0.12	1.8096	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.89	1	1.9296	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	233	MT-ND4	1984	chrM:11743:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	19554	0	0.01	1	0.0277	2.1512	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.01	1	2.1789	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-TA--MT-TC	57	8	MT-TA	1053	chrM:5603:-	MT-TC	4081	chrM:5815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5263	0.0739	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH292_LUNG	1	1	0.6002	FALSE	462	80	0	856	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	4	200	MT-ND4	1093	chrM:10852:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	40	0	0.84	1	0.0369	1.8465	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.84	1	1.8834	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	203	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	136	0	0.6	1	0.0277	1.8742	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.6	1	1.9019	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	34	76	MT-CO3	1153	chrM:9359:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	10	16	0.92	0.87	0.3139	0.7017	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.87	0.92	1.0156	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	6	188	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	148	0	0.57	1	0.0554	1.7357	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.57	1	1.7911	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	46	11	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4247	0.1016	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	1	1	0.5263	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	181	MT-ND4	1060	chrM:10819:+	MT-ND4L	5532	chrM:10623:+	INCL_NON_REF_SPLICE	YES	29	0	0.86	1	0.0277	1.6711	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.86	1	1.6988	FALSE	344	821	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	32	64	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	16085	0	0.01	1	0.2954	0.5909	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.01	1	0.8863	FALSE	328	800	43	304	0	FALSE	ACH-001075
NCIH292_LUNG	MT-TA--MT-TN	44	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4062	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH292_LUNG	1	1	0.4062	FALSE	369	2501	205	193	0	FALSE	ACH-001075
NCIH292_LUNG	CRTC1--MAML2	40	15	CRTC1	1152	chr19:18794638:+	MAML2	27695	chr11:95826681:-	ONLY_REF_SPLICE	YES	4	5	0.93	0.92	0.3693	0.1385	Cosmic{samples=632,mutations=253,papers=36},Mitelman{CA_mucep=2},chimerdb_omim:{humanmalignantsalivaryglandtumor},chimerdb_omim:{mucoepidermoidcarcinoma},chimerdb_pubmed{Mucoepidermoid carcinomas (MEC),mucoepidermoid carcinoma,mucoepidermoid carcinoma and Warthin's tumor of salivary glands,Warthin's tumor, mucoepidermoid carcinoma,mucoepidermoid carcinoma (MEC), Warthin tumors (WT),Mucoepidermoid carcinoma},{Klijn_CCL:Lung=1},CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	NCIH292_LUNG	0.92	0.93	0.5078	TRUE	0	1	0	1	1	TRUE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	5	133	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	33	0	0.81	1	0.0462	1.2279	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.81	1	1.2741	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	5	130	MT-ND4	1231	chrM:10990:+	MT-ND4L	5632	chrM:10723:+	INCL_NON_REF_SPLICE	YES	123	0	0.52	1	0.0462	1.2002	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.52	1	1.2464	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	15	89	MT-CO3	1220	chrM:9426:+	MT-ATP6	4919	chrM:8661:+	INCL_NON_REF_SPLICE	YES	28	25	0.79	0.81	0.1385	0.8217	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.79	0.81	0.9602	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	4	132	MT-ND4	1144	chrM:10903:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	26	0	0.84	1	0.0369	1.2187	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.84	1	1.2556	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	16	83	MT-CO3	1322	chrM:9528:+	MT-ATP6	5065	chrM:8807:+	INCL_NON_REF_SPLICE	NO	25	129	0.8	0.43	0.1477	0.7663	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.43	0.8	0.914	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-TA--MT-TN	20	63	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1847	0.5817	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH292_LUNG	1	1	0.7664	FALSE	369	2501	205	193	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ATP6--MT-RNR2	33	2	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	10477	6011	0	0.01	0.3047	0.0185	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH292_LUNG	0	0.01	0.3232	FALSE	63	17	1	58	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	8	96	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	YES	28	0	0.79	1	0.0739	0.8863	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.79	1	0.9602	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	23	28	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.2124	0.2585	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	0.96	1	0.4709	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	3	105	MT-CO3	1450	chrM:9656:+	MT-ATP6	4745	chrM:8487:+	INCL_NON_REF_SPLICE	YES	36	0	0.75	1	0.0277	0.9694	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.75	1	0.9971	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	11	73	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	98	0.99	0.46	0.1016	0.674	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.46	0.99	0.7756	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	4	96	MT-CO3	1222	chrM:9428:+	MT-ATP6	4744	chrM:8486:+	INCL_NON_REF_SPLICE	YES	26	0	0.79	1	0.0369	0.8863	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.79	1	0.9232	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	9	75	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	16	0.94	0.84	0.0831	0.6924	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.84	0.94	0.7755	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	8	78	MT-CO3	1138	chrM:9344:+	MT-ATP6	4905	chrM:8647:+	INCL_NON_REF_SPLICE	YES	4	7	0.96	0.92	0.0739	0.7201	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.92	0.96	0.794	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	7	82	MT-CO3	1220	chrM:9426:+	MT-ATP6	5072	chrM:8814:+	INCL_NON_REF_SPLICE	NO	28	114	0.76	0.44	0.0646	0.7571	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.44	0.76	0.8217	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	6	85	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	16	0	0.85	1	0.0554	0.7848	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.85	1	0.8402	FALSE	344	821	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	3	96	MT-CO3	1459	chrM:9665:+	MT-ATP6	4899	chrM:8641:+	INCL_NON_REF_SPLICE	YES	40	3	0.71	0.97	0.0277	0.8863	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.71	0.97	0.914	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	4	92	MT-ND4	1519	chrM:11278:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	YES	1073	0	0.08	1	0.0369	0.8494	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.08	1	0.8863	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	6	84	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	35	0	0.72	1	0.0554	0.7755	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.72	1	0.8309	FALSE	344	821	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	C15orf57--CBX3	24	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	23	21	0.6	0.62	0.2216	0.0923	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH292_LUNG	0.6	0.62	0.3139	TRUE	267	562	48	632	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	6	82	MT-CO3	1439	chrM:9645:+	MT-ATP6	5173	chrM:8915:+	INCL_NON_REF_SPLICE	YES	32	110	0.73	0.44	0.0554	0.7571	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.44	0.73	0.8125	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	11	62	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1073	0	0.06	1	0.1016	0.5724	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.06	1	0.674	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	3	93	MT-CO3	1484	chrM:9690:+	MT-ATP6	4965	chrM:8707:+	INCL_NON_REF_SPLICE	YES	49	26	0.66	0.79	0.0277	0.8586	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.66	0.79	0.8863	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	16	41	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	28	0	0.67	1	0.1477	0.3785	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.67	1	0.5262	FALSE	344	821	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	3	92	MT-CO3	1205	chrM:9411:+	MT-ATP6	4815	chrM:8557:+	INCL_NON_REF_SPLICE	YES	29	0	0.77	1	0.0277	0.8494	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.77	1	0.8771	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-TA--MT-TN	21	20	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1939	0.1847	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH292_LUNG	1	1	0.3786	FALSE	369	2501	205	193	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	8	71	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	14	0	0.85	1	0.0739	0.6555	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.85	1	0.7294	FALSE	344	821	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	7	74	MT-CO3	1138	chrM:9344:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	4	17	0.95	0.83	0.0646	0.6832	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.83	0.95	0.7478	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	5	77	MT-CO3	1220	chrM:9426:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	28	17	0.75	0.83	0.0462	0.7109	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.75	0.83	0.7571	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	4	77	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	29	18	0.74	0.82	0.0369	0.7109	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.74	0.82	0.7478	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	16	28	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	40	0	0.52	1	0.1477	0.2585	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.52	1	0.4062	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	14	36	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1223	0	0.04	1	0.1293	0.3324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.04	1	0.4617	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-TA--MT-TN	17	23	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.157	0.2124	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH292_LUNG	1	1	0.3694	FALSE	369	2501	205	193	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	3	75	MT-CO3	1138	chrM:9344:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	4	31	0.95	0.72	0.0277	0.6924	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.72	0.95	0.7201	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	3	75	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	4	101	0.95	0.44	0.0277	0.6924	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.44	0.95	0.7201	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	3	74	MT-CO3	1126	chrM:9332:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	NO	3	17	0.96	0.82	0.0277	0.6832	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.82	0.96	0.7109	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	4	69	MT-CO3	1075	chrM:9281:+	MT-ATP6	5242	chrM:8984:+	INCL_NON_REF_SPLICE	YES	2	27	0.97	0.73	0.0369	0.6371	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.73	0.97	0.674	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	3	72	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	11	0.99	0.87	0.0277	0.6648	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.87	0.99	0.6925	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	3	72	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	1	17	0.99	0.82	0.0277	0.6648	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.82	0.99	0.6925	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-TA--MT-TN	20	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1847	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH292_LUNG	1	1	0.1847	FALSE	369	2501	205	193	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	4	63	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	7901	0	0.01	1	0.0369	0.5817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.01	1	0.6186	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	3	66	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0.6094	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	1	1	0.6371	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	12	28	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1108	0.2585	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	1	1	0.3693	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	7	46	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.0646	0.4247	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	0.96	1	0.4893	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	17	5	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	7	0	0.76	1	0.157	0.0462	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.76	1	0.2032	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	4	57	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	37	0	0.62	1	0.0369	0.5263	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.62	1	0.5632	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	9	36	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	664	0	0.06	1	0.0831	0.3324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.06	1	0.4155	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	4	54	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	33	0	0.64	1	0.0369	0.4986	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.64	1	0.5355	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-TA--MT-TN	7	41	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0.3785	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH292_LUNG	1	1	0.4431	FALSE	369	2501	205	193	0	FALSE	ACH-001075
NCIH292_LUNG	SLC7A5--MT-ND4L	16	5	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2907	0	0.01	1	0.1477	0.0462	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.01	1	0.1939	FALSE	0	0	0	23	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	10	27	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	4	2	0.9	0.95	0.0923	0.2493	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.9	0.95	0.3416	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	C15orf57--CBX3	15	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	22	22	0.48	0.48	0.1385	0.0462	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH292_LUNG	0.48	0.48	0.1847	TRUE	267	562	48	632	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	6	38	MT-ND4	2029	chrM:11788:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	18211	0	0	1	0.0554	0.3508	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0	1	0.4062	FALSE	344	826	44	305	0	FALSE	ACH-001075
NCIH292_LUNG	MT-TA--MT-TN	3	49	MT-TA	1059	chrM:5597:-	MT-TN	4091	chrM:5708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0.4524	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH292_LUNG	1	1	0.4801	FALSE	369	2501	205	193	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	7	32	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	7	0	0.85	1	0.0646	0.2954	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	0.85	1	0.36	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	4	44	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.0369	0.4062	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	0.96	1	0.4431	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	MT-TA--MT-TN	15	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1385	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH292_LUNG	1	1	0.1385	FALSE	369	2501	205	193	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	5	39	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	40	0	0.52	1	0.0462	0.3601	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.52	1	0.4063	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	3	46	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.0277	0.4247	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	0.94	1	0.4524	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	RP11-494M8.4--OVCH2	12	9	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	3	0	0.88	1	0.1108	0.0831	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	NCIH292_LUNG	0.88	1	0.1939	FALSE	32	0	0	22	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	6	31	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	33	0	0.53	1	0.0554	0.2862	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.53	1	0.3416	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	4	38	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	17750	0	0	1	0.0369	0.3508	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0	1	0.3877	FALSE	343	822	44	305	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	9	18	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	136	0	0.17	1	0.0831	0.1662	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.17	1	0.2493	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	IGFBP7--MT-ND4L	13	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.12	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	1	1	0.12	FALSE	1	0	0	30	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	12	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1108	0.0369	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	1	1	0.1477	FALSE	344	821	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	4	36	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	124	0	0.24	1	0.0369	0.3324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.24	1	0.3693	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	8	18	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	39	0	0.4	1	0.0739	0.1662	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.4	1	0.2401	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	3	37	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	1	17	0.98	0.7	0.0277	0.3416	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.7	0.98	0.3693	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	4	33	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.0369	0.3047	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.88	1	0.3416	FALSE	344	821	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	37	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	7901	0	0.01	1	0.0277	0.3416	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.01	1	0.3693	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-TA--MT-TC	12	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1108	0.0092	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH292_LUNG	1	1	0.12	FALSE	462	80	0	856	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	36	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	136	0	0.22	1	0.0277	0.3324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.22	1	0.3601	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	5	28	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0462	0.2585	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	0.94	1	0.3047	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1108	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	NCIH292_LUNG	1	1	0.1108	TRUE	46	1352	75	139	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ATP6--MT-RNR2	11	1	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	NO	7318	0	0	1	0.1016	0.0092	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH292_LUNG	0	1	0.1108	FALSE	63	17	1	58	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	11	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1016	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	1	1	0.1016	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	5	21	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	1	0.96	0.96	0.0462	0.1939	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.96	0.96	0.2401	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	RP11-680G10.1--GSE1	10	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	23	1	0.32	0.0923	0.0092	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH292_LUNG	0.32	1	0.1015	TRUE	465	1949	224	605	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	3	28	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	6	0	0.84	1	0.0277	0.2585	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	0.84	1	0.2862	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	MT-TA--MT-TN	3	28	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0.2585	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH292_LUNG	1	1	0.2862	FALSE	369	2501	205	193	0	FALSE	ACH-001075
NCIH292_LUNG	OR51S1--TP53I11	10	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0923	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH292_LUNG	1	1	0.0923	TRUE	402	216	10	229	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ATP6--MT-RNR2	9	3	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	10477	0	0	1	0.0831	0.0277	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH292_LUNG	0	1	0.1108	FALSE	63	17	1	58	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	5	18	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	44	0	0.34	1	0.0462	0.1662	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.34	1	0.2124	FALSE	344	826	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	IGFBP7--KRT17	9	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0831	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	NCIH292_LUNG	1	1	0.0831	TRUE	0	0	0	9	0	TRUE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	7	7	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	19	0	0.42	1	0.0646	0.0646	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.42	1	0.1292	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	RP11-123O10.4--GRIP1	8	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0739	0.0277	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH292_LUNG	1	1	0.1016	FALSE	416	2512	207	587	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	8	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0739	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	1	1	0.0739	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND3--MT-TG	8	0	MT-ND3	1026	chrM:10084:+	MT-TG	4396	chrM:10040:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0739	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	NCIH292_LUNG	1	1	0.0739	FALSE	97	9	0	14	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	8	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0739	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	1	1	0.0739	FALSE	344	821	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	20	MT-ND4	1008	chrM:10767:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0277	0.1847	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.88	1	0.2124	FALSE	344	821	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-TA--MT-TN	8	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0739	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH292_LUNG	1	1	0.0739	FALSE	369	2501	205	193	0	FALSE	ACH-001075
NCIH292_LUNG	MT-TA--MT-TN	8	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0739	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH292_LUNG	1	1	0.0739	FALSE	369	2501	205	193	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	19	MT-ND4	1008	chrM:10767:+	MT-ND4L	5567	chrM:10658:+	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0277	0.1754	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.88	1	0.2031	FALSE	344	821	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	7	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	1	1	0.0646	FALSE	344	821	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	16	MT-ND4	1338	chrM:11097:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	180	0	0.1	1	0.0277	0.1477	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.1	1	0.1754	FALSE	344	827	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	4	12	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0369	0.1108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	0.94	1	0.1477	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	7	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	1	1	0.0646	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	RP11-96H19.1--RP11-446N19.1	6	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0554	0.0277	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH292_LUNG	0.9	1	0.0831	FALSE	515	4851	409	746	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	4	10	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	4	1	0.78	0.93	0.0369	0.0923	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.78	0.93	0.1292	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ATP6--MT-RNR2	6	1	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	9621	5937	0	0	0.0554	0.0092	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH292_LUNG	0	0	0.0646	FALSE	63	17	1	58	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	1	1	0.0554	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	IGFBP7--KRT17	5	2	IGFBP7	1147	chr4:57976405:-	KRT17	10592	chr17:39780778:-	INCL_NON_REF_SPLICE	YES	85	1	0.08	0.88	0.0462	0.0185	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	NCIH292_LUNG	0.08	0.88	0.0647	TRUE	0	0	0	9	0	TRUE	ACH-001075
NCIH292_LUNG	MT-ATP6--MT-RNR2	5	2	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	9708	5907	0	0	0.0462	0.0185	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH292_LUNG	0	0	0.0647	FALSE	63	17	1	58	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	7971	0	0	1	0.0462	0.0092	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH292_LUNG	0	1	0.0554	FALSE	63	17	1	58	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	5	1	MT-CO3	1020	chrM:9226:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	NO	1	1	0.86	0.86	0.0462	0.0092	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.86	0.86	0.0554	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	5	1	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	2	1	0.75	0.86	0.0462	0.0092	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.75	0.86	0.0554	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	9	MT-ND4	1031	chrM:10790:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	17	0	0.41	1	0.0277	0.0831	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.41	1	0.1108	FALSE	344	821	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5387	chrM:2376:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH292_LUNG	1	1	0.0462	FALSE	63	17	1	58	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	1	1	0.0462	FALSE	344	821	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0462	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH292_LUNG	1	1	0.0462	FALSE	292	1546	117	613	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1123	chrM:8649:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	7347	6373	0	0	0.0369	0.0092	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH292_LUNG	0	0	0.0461	FALSE	63	17	1	58	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	4	1	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0.0092	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	1	1	0.0461	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	MT-TA--MT-TN	4	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH292_LUNG	1	1	0.0369	FALSE	369	2501	205	193	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1303	chrM:8829:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	NO	15802	0	0	1	0.0277	0.0277	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH292_LUNG	0	1	0.0554	FALSE	63	17	1	58	0	FALSE	ACH-001075
NCIH292_LUNG	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0277	0.0277	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH292_LUNG	0.86	1	0.0554	FALSE	407	2205	196	549	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1142	chrM:8668:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	NO	9236	5830	0	0	0.0277	0.0092	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH292_LUNG	0	0	0.0369	FALSE	63	17	1	58	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1110	chrM:8636:+	MT-RNR2	5247	chrM:2236:+	INCL_NON_REF_SPLICE	NO	7130	6207	0	0	0.0277	0.0092	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH292_LUNG	0	0	0.0369	FALSE	63	17	1	58	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1125	chrM:8651:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	7481	5907	0	0	0.0277	0.0092	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH292_LUNG	0	0	0.0369	FALSE	63	17	1	58	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	7893	6176	0	0	0.0277	0.0092	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH292_LUNG	0	0	0.0369	FALSE	63	17	1	58	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1121	chrM:8647:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	YES	7303	5830	0	0	0.0277	0.0092	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH292_LUNG	0	0	0.0369	FALSE	63	17	1	58	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1106	chrM:8632:+	MT-RNR2	5243	chrM:2232:+	INCL_NON_REF_SPLICE	NO	6400	6299	0	0	0.0277	0.0092	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH292_LUNG	0	0	0.0369	FALSE	63	17	1	58	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	11	0	0.27	1	0.0277	0.0092	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.27	1	0.0369	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	1	2	0.8	0.67	0.0277	0.0092	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH292_LUNG	0.67	0.8	0.0369	FALSE	189	492	56	216	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	30	0	0.12	1	0.0277	0.0092	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	0.12	1	0.0369	FALSE	344	821	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	3	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0.0092	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	1	1	0.0369	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	RP11-123O10.4--GRIP1	3	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0.0092	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH292_LUNG	1	1	0.0369	FALSE	93	270	15	244	0	FALSE	ACH-001075
NCIH292_LUNG	RP11-494M8.4--OVCH2	1	9	RP11-494M8.4	7189	chr11:7876430:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	NO	1	0	0.91	1	0.0092	0.0831	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	NCIH292_LUNG	0.91	1	0.0923	FALSE	3	0	0	2	0	FALSE	ACH-001075
NCIH292_LUNG	RP11-494M8.4--OVCH2	3	1	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	8	0	0.33	1	0.0277	0.0092	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	NCIH292_LUNG	0.33	1	0.0369	FALSE	60	13	8	23	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH292_LUNG	1	1	0.0277	FALSE	63	17	1	58	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND3--MT-TG	3	0	MT-ND3	1063	chrM:10121:+	MT-TG	4390	chrM:10034:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	NCIH292_LUNG	1	1	0.0277	FALSE	97	9	0	14	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH292_LUNG	1	1	0.0277	FALSE	344	821	44	306	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	1	1	0.0277	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4573	chrM:14695:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH292_LUNG	1	1	0.0277	FALSE	499	1288	110	792	0	FALSE	ACH-001075
NCIH292_LUNG	PTP4A1--MT2A	3	0	PTP4A1	3933	chr6:64282517:+	MT2A	16021	chr16:56642496:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1,MT2A->chr16:56642111-56643409:+,metallothionein_2A	NCIH292_LUNG	1	1	0.0277	TRUE	0	0	0	2	0	TRUE	ACH-001075
NCIH292_LUNG	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0.0277	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH292_LUNG	1	1	0.0462	FALSE	467	2173	244	435	0	FALSE	ACH-001075
NCIH292_LUNG	ABCC10--SAT1	2	0	ABCC10	9876	chr6:43406533:+	SAT1	24601	chrX:23803445:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	ABCC10->ATP_binding_cassette_subfamily_C_member_10,chr6:43395104-43418168:+,SAT1->chrX:23801290-23804343:+,spermidine/spermine_N1-acetyltransferase_1	NCIH292_LUNG	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-001075
NCIH292_LUNG	CTTN--RPS6KA4	2	0	CTTN	11290	chr11:70266616:+	RPS6KA4	26248	chr11:64128606:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin,RPS6KA4->chr11:64126620-64139687:+,ribosomal_protein_S6_kinase_A4	NCIH292_LUNG	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-001075
NCIH292_LUNG	GRHL2--AZIN1	2	0	GRHL2	1358	chr8:102505017:+	AZIN1	30959	chr8:103870378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	GRHL2->chr8:102504660-102681954:+,grainyhead_like_transcription_factor_2,AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-	NCIH292_LUNG	1	1	0.0185	TRUE	0	1	0	1	1	TRUE	ACH-001075
NCIH292_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0092	0.0277	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH292_LUNG	1	1	0.0369	FALSE	192	492	57	212	0	FALSE	ACH-001075
NCIH292_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0092	0.0277	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH292_LUNG	0.8	1	0.0369	FALSE	275	511	55	178	0	FALSE	ACH-001075
NCIH292_LUNG	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	15	0	0.17	1	0.0092	0.0185	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH292_LUNG	0.17	1	0.0277	FALSE	164	806	69	479	0	FALSE	ACH-001075
NCIH292_LUNG	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	20	1	0.13	0.0092	0.0185	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH292_LUNG	0.13	1	0.0277	TRUE	458	1351	185	561	0	FALSE	ACH-001075
NCIH292_LUNG	CAV1--CAV2	1	1	CAV1	2905	chr7:116166743:+	CAV2	32473	chr7:116146025:+	ONLY_REF_SPLICE	YES	928	565	0	0	0.0092	0.0092	GTEx&tcga_normals:1/3694=0.03%,PROTCLUST,LOCAL_REARRANGEMENT:+:[16244],CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+,CAV2->caveolin_2,chr7:115927434-116148595:+	NCIH292_LUNG	0	0	0.0184	FALSE	0	0	0	3	0	FALSE	ACH-001075
NCIH292_LUNG	FN1--RND3	1	1	FN1	23788	chr2:216261860:-	RND3	60308	chr2:151331498:-	ONLY_REF_SPLICE	NO	4124	249	0	0.01	0.0092	0.0092	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,RND3->Rho_family_GTPase_3,chr2:151324709-151395525:-	NCIH292_LUNG	0	0.01	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-001075
NCIH292_LUNG	GNA12--PSMA1	1	1	GNA12	4638	chr7:2834562:-	PSMA1	24117	chr11:14535245:-	ONLY_REF_SPLICE	YES	47	700	0.04	0	0.0092	0.0092	GNA12->G_protein_subunit_alpha_12,Oncogene{Bushman},chr7:2767746-2883958:-,PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1	NCIH292_LUNG	0	0.04	0.0184	FALSE	0	0	0	2	0	FALSE	ACH-001075
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGFR1OP2--FGFR1	472	225	FGFR1OP2	5274	chr12:27110676:+	FGFR1	36749	chr8:38275891:-	ONLY_REF_SPLICE	YES	127	2	0.85	1	6.7919	3.2377	chimerdb_omim:{T-celllymphoblasticlymphoma},{Klijn_CCL:Lymphoid=1},FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,FGFR1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr8:38268656-38326352:-,fibroblast_growth_factor_receptor_1	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	10.0296	TRUE	0	0	0	1	0	TRUE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	88	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2663	0.331	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.5973	TRUE	508	994	45	981	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	51	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	187	9	0.22	0.86	0.7339	0.0432	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.86	0.7771	TRUE	519	3926	326	965	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM9B--HCLS1	38	0	TMEM9B	1652	chr11:8985907:-	HCLS1	26041	chr3:121351323:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5468	0	TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-,HCLS1->chr3:121350246-121379774:-,hematopoietic_cell-specific_Lyn_substrate_1	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5468	TRUE	1	0	0	2	0	TRUE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ST7--TFEC	27	8	ST7	1454	chr7:116593745:+	TFEC	43945	chr7:115752092:-	ONLY_REF_SPLICE	YES	16	0	0.69	1	0.3885	0.1151	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,TFEC->chr7:115575202-115799950:-,transcription_factor_EC	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	0.5036	TRUE	0	0	0	1	0	TRUE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	24	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3454	0.0432	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3886	FALSE	499	1288	110	792	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C6orf141--ZNF529	22	0	C6orf141	5089	chr6:49522870:+	ZNF529	13907	chr19:37073608:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3166	0	GTEx_FI:{Brain=[count:22=pct:3.3],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Breast=[count:1=pct:0.9]},C6orf141->chr6:49518113-49529620:+,chromosome_6_open_reading_frame_141,ZNF529->chr19:37025676-37096178:-,zinc_finger_protein_529	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3166	TRUE	23	15	0	4	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRIA3--STAG2	19	9	GRIA3	7855	chrX:122460064:+	STAG2	35373	chrX:123155217:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2734	0.1295	GRIA3->chrX:122318006-122624766:+,glutamate_ionotropic_receptor_AMPA_type_subunit_3,STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4029	TRUE	0	0	0	1	0	TRUE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1583	0.0576	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2159	FALSE	499	1288	110	792	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	11	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.55	1	0.1583	0.0144	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.1727	FALSE	292	1546	117	613	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRIA3--STAG2	8	8	GRIA3	7855	chrX:122460064:+	STAG2	36438	chrX:123156381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1151	0.1151	GRIA3->chrX:122318006-122624766:+,glutamate_ionotropic_receptor_AMPA_type_subunit_3,STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2302	TRUE	0	0	0	1	0	TRUE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1007	0.1583	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.259	FALSE	499	1288	110	792	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-763B22.4--SEC22B	8	1	RP11-763B22.4	1056	chr1:148760559:+	SEC22B	9372	chr1:145109524:+	ONLY_REF_SPLICE	YES	0	239	1	0.04	0.1151	0.0144	GTEx_FI:{Brain=[count:9=pct:1.4],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},RP11-763B22.4->chr1:148760504-148761583:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.1295	TRUE	11	9	1	4	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	7	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	19	1	0.3	0.1007	0.0144	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.1151	TRUE	458	1351	185	561	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	16	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0432	0.2302	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2734	FALSE	499	1288	110	792	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R9A--XRCC2	4	2	PPP1R9A	15374	chr7:94881442:+	XRCC2	35538	chr7:152357867:-	ONLY_REF_SPLICE	YES	6	2	0.5	0.75	0.0576	0.0288	{Klijn_CCL:Lymphoid=1},PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A,XRCC2->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_2,chr7:152341864-152373250:-	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.75	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	4	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	86	0	0.05	1	0.0576	0.0144	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.072	FALSE	164	806	69	479	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	85	1	0.06	0.0576	0.0144	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.072	TRUE	465	1949	224	605	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0432	FALSE	183	104	9	328	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0432	FALSE	183	104	9	328	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0432	FALSE	499	1288	110	792	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0432	FALSE	499	1288	110	792	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ST7--TFEC	3	0	ST7	1454	chr7:116593745:+	TFEC	50860	chr7:115596847:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,TFEC->chr7:115575202-115799950:-,transcription_factor_EC	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0.0288	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0576	FALSE	515	4851	409	746	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0288	0.0144	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0432	FALSE	16	356	14	466	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0288	TRUE	0	9	0	44	1	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGFR1OP2--FGFR1	1	3	FGFR1OP2	1328	chr12:27091643:+	FGFR1	36749	chr8:38275891:-	ONLY_REF_SPLICE	YES	270	2	0.01	0.67	0.0144	0.0432	chimerdb_omim:{T-celllymphoblasticlymphoma},{Klijn_CCL:Lymphoid=1},FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,FGFR1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr8:38268656-38326352:-,fibroblast_growth_factor_receptor_1	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.67	0.0576	FALSE	0	0	0	1	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0144	0.0432	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0576	FALSE	407	2205	196	549	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0.0288	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0432	FALSE	467	2173	244	435	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	54	0	0.04	1	0.0144	0.0144	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0288	FALSE	125	705	46	456	0	FALSE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R9A--XRCC2	1	1	PPP1R9A	15374	chr7:94881442:+	XRCC2	36620	chr7:152346448:-	ONLY_REF_SPLICE	YES	6	25	0.25	0.07	0.0144	0.0144	{Klijn_CCL:Lymphoid=1},PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A,XRCC2->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_2,chr7:152341864-152373250:-	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.25	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000386
KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAP1--CPSF7	1	1	UBAP1	1236	chr9:34179238:+	CPSF7	15560	chr11:61196762:-	ONLY_REF_SPLICE	YES	89	15	0.02	0.12	0.0144	0.0144	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,CPSF7->chr11:61170121-61197503:-,cleavage_and_polyadenylation_specific_factor_7	KG1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.12	0.0288	TRUE	0	0	0	1	0	FALSE	ACH-000386
SKMEL1_SKIN	RABGAP1--CTD-2353F22.1	270	75	RABGAP1	3561	chr9:125719488:+	CTD-2353F22.1	41246	chr5:36668813:-	ONLY_REF_SPLICE	YES	12	0	0.97	1	2.625	0.7292	RABGAP1->RAB_GTPase_activating_protein_1,chr9:125703112-125867145:+,CTD-2353F22.1->chr5:36666316-36725297:-	SKMEL1_SKIN	0.97	1	3.3542	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	OTOA--METTL9	196	73	OTOA	5955	chr16:21698969:+	METTL9	39525	chr16:21623966:+	ONLY_REF_SPLICE	YES	0	1237	1	0.18	1.9056	0.7097	LOCAL_REARRANGEMENT:+:[21041],OTOA->chr16:21689835-21772050:+,otoancorin,METTL9->chr16:21608539-21668794:+,methyltransferase_like_9	SKMEL1_SKIN	0.18	1	2.6153	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	USP15--RP11-417L19.4	86	14	USP15	1166	chr12:62654284:+	RP11-417L19.4	37313	chr12:132413884:-	INCL_NON_REF_SPLICE	YES	35	0	0.74	1	0.8361	0.1361	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,RP11-417L19.4->chr12:132409281-132413896:-	SKMEL1_SKIN	0.74	1	0.9722	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	TIMM23B--LINC00843	84	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8167	0.1361	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKMEL1_SKIN	1	1	0.9528	TRUE	508	994	45	981	0	FALSE	ACH-000465
SKMEL1_SKIN	TADA2A--C17orf78	51	27	TADA2A	2741	chr17:35771477:+	C17orf78	29021	chr17:35736075:+	ONLY_REF_SPLICE	YES	35	0	0.69	1	0.4958	0.2625	{Klijn_CCL:Skin=1},LOCAL_REARRANGEMENT:+:[17303],TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,C17orf78->chr17:35732928-35749662:+,chromosome_17_open_reading_frame_78	SKMEL1_SKIN	0.69	1	0.7583	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	FUT8--NUMB	50	20	FUT8	22918	chr14:66200099:+	NUMB	40912	chr14:73783130:-	ONLY_REF_SPLICE	YES	18	51	0.8	0.58	0.4861	0.1944	{Klijn_CCL:Skin=1},FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	SKMEL1_SKIN	0.58	0.8	0.6805	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	RP1-34H18.1--NAV3	53	8	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.5153	0.0778	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SKMEL1_SKIN	1	1	0.5931	TRUE	254	575	65	124	0	FALSE	ACH-000465
SKMEL1_SKIN	PPP1R12A--PSEN1	42	21	PPP1R12A	1766	chr12:80328475:-	PSEN1	58252	chr14:73678477:+	ONLY_REF_SPLICE	YES	65	40	0.49	0.61	0.4083	0.2042	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,PSEN1->chr14:73603126-73690399:+,presenilin_1	SKMEL1_SKIN	0.49	0.61	0.6125	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	ZBTB26--AGAP2	45	2	ZBTB26	1064	chr9:125693716:-	AGAP2	13231	chr12:58129210:-	ONLY_REF_SPLICE	YES	0	4	1	0.92	0.4375	0.0194	ZBTB26->chr9:125677845-125693779:-,zinc_finger_and_BTB_domain_containing_26,AGAP2->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_2,Oncogene{Bushman},chr12:58118980-58135940:-	SKMEL1_SKIN	0.92	1	0.4569	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	FUT8--NUMB	40	16	FUT8	22918	chr14:66200099:+	NUMB	44035	chr14:73763993:-	ONLY_REF_SPLICE	YES	18	48	0.76	0.54	0.3889	0.1556	{Klijn_CCL:Skin=1},FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	SKMEL1_SKIN	0.54	0.76	0.5445	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	RABGAP1--CTD-2353F22.1	34	25	RABGAP1	3561	chr9:125719488:+	CTD-2353F22.1	42393	chr5:36666586:-	ONLY_REF_SPLICE	YES	12	45	0.83	0.57	0.3306	0.2431	RABGAP1->RAB_GTPase_activating_protein_1,chr9:125703112-125867145:+,CTD-2353F22.1->chr5:36666316-36725297:-	SKMEL1_SKIN	0.57	0.83	0.5737	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	TERT--SLC6A3	38	3	TERT	16058	chr5:1255402:-	SLC6A3	36459	chr5:1401101:-	ONLY_REF_SPLICE	YES	173	0	0.19	1	0.3694	0.0292	LOCAL_REARRANGEMENT:-:[97725],TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase,SLC6A3->Oncogene{Bushman},chr5:1392909-1445545:-,solute_carrier_family_6_member_3	SKMEL1_SKIN	0.19	1	0.3986	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	TIMM23--RP11-464F9.1	38	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	166	6	0.19	0.87	0.3694	0.0194	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKMEL1_SKIN	0.19	0.87	0.3888	TRUE	519	3926	326	965	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ND4--MT-ND4L	4	137	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	5	0	0.97	1	0.0389	1.3319	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL1_SKIN	0.97	1	1.3708	FALSE	344	826	44	306	0	FALSE	ACH-000465
SKMEL1_SKIN	BABAM1--OCEL1	35	8	BABAM1	2711	chr19:17379900:+	OCEL1	15364	chr19:17339065:+	ONLY_REF_SPLICE	YES	171	17	0.2	0.72	0.3403	0.0778	{Klijn_CCL:Skin=1},LOCAL_REARRANGEMENT:+:[38131],BABAM1->BRISC_and_BRCA1_A_complex_member_1,chr19:17378159-17392058:+,OCEL1->chr19:17337013-17340028:+,occludin/ELL_domain_containing_1	SKMEL1_SKIN	0.2	0.72	0.4181	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	NIPA2--POLA1	36	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.35	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SKMEL1_SKIN	1	1	0.35	TRUE	46	1352	75	139	0	FALSE	ACH-000465
SKMEL1_SKIN	RP11-444D3.1--SOX5	33	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	18	1	0.68	0.3208	0.0486	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL1_SKIN	0.68	1	0.3694	TRUE	477	1352	189	275	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ND4--MT-ND4L	4	120	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	0	0.97	1	0.0389	1.1667	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL1_SKIN	0.97	1	1.2056	FALSE	344	821	44	306	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ND4--MT-ND4L	4	116	MT-ND4	1475	chrM:11234:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	161	1	0.43	0.99	0.0389	1.1278	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL1_SKIN	0.43	0.99	1.1667	FALSE	344	827	44	306	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-TA--MT-TC	31	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3014	0.0292	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL1_SKIN	1	1	0.3306	FALSE	462	80	0	856	0	FALSE	ACH-000465
SKMEL1_SKIN	KIAA1984--CDH18	29	4	KIAA1984	4889	chr9:139697238:+	CDH18	16891	chr5:19981287:-	ONLY_REF_SPLICE	YES	1	7	0.97	0.82	0.2819	0.0389	KIAA1984->chr9:139690802-139702193:+,CDH18->cadherin_18,chr5:19473060-20575982:-	SKMEL1_SKIN	0.82	0.97	0.3208	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	MT-ND4--MT-ND4L	3	108	MT-ND4	1298	chrM:11057:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	19	1	0.85	0.99	0.0292	1.05	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL1_SKIN	0.85	0.99	1.0792	FALSE	344	827	44	306	0	FALSE	ACH-000465
SKMEL1_SKIN	SLC1A5--MT-ND4L	27	7	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1947	0	0.02	1	0.2625	0.0681	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL1_SKIN	0.02	1	0.3306	FALSE	0	0	0	189	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ND4--MT-ND4L	3	101	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	19	1	0.85	0.99	0.0292	0.9819	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL1_SKIN	0.85	0.99	1.0111	FALSE	344	827	44	306	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ND6--MT-ND5	28	0	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2722	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SKMEL1_SKIN	1	1	0.2722	FALSE	101	855	57	72	0	FALSE	ACH-000465
SKMEL1_SKIN	TMED2--RP11-351O2.1	26	7	TMED2	5209	chr12:124074996:+	RP11-351O2.1	12658	chr12:128084153:+	INCL_NON_REF_SPLICE	YES	678	0	0.05	1	0.2528	0.0681	TMED2->chr12:124069078-124083116:+,transmembrane_p24_trafficking_protein_2,RP11-351O2.1->chr12:128082713-128084260:+	SKMEL1_SKIN	0.05	1	0.3209	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	C15orf57--CBX3	22	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	12	49	0.73	0.4	0.2139	0.1069	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKMEL1_SKIN	0.4	0.73	0.3208	TRUE	267	562	48	632	0	FALSE	ACH-000465
SKMEL1_SKIN	RP11-178C3.2--VMP1	23	6	RP11-178C3.2	2422	chr17:58043828:+	VMP1	25342	chr17:57915656:+	ONLY_REF_SPLICE	YES	12	147	0.71	0.16	0.2236	0.0583	RP11-178C3.2->chr17:58042193-58074333:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SKMEL1_SKIN	0.16	0.71	0.2819	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	EPHB2--RP11-114H23.2	22	1	EPHB2	1205	chr1:23037536:+	RP11-114H23.2	27730	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2139	0.0097	EPHB2->EPH_receptor_B2,chr1:23037332-23241818:+,RP11-114H23.2->chr12:76087790-76092596:-	SKMEL1_SKIN	1	1	0.2236	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	MT-ND6--MT-TE	21	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2042	0.0194	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL1_SKIN	1	1	0.2236	FALSE	499	1288	110	792	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ND6--MT-TE	18	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.175	0.0875	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL1_SKIN	0.96	1	0.2625	FALSE	499	1288	110	792	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ND4--MT-ND4L	8	41	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	7617	1	0.01	0.98	0.0778	0.3986	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL1_SKIN	0.01	0.98	0.4764	FALSE	328	800	43	304	0	FALSE	ACH-000465
SKMEL1_SKIN	HSP90AB1--MT-RNR2	18	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.175	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL1_SKIN	1	1	0.175	FALSE	13	9	0	364	0	FALSE	ACH-000465
SKMEL1_SKIN	OTOA--METTL9	14	14	OTOA	4719	chr16:21696682:+	METTL9	39525	chr16:21623966:+	ONLY_REF_SPLICE	YES	54	1237	0.34	0.02	0.1361	0.1361	LOCAL_REARRANGEMENT:+:[21041],OTOA->chr16:21689835-21772050:+,otoancorin,METTL9->chr16:21608539-21668794:+,methyltransferase_like_9	SKMEL1_SKIN	0.02	0.34	0.2722	TRUE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	TERT--SLC6A3	16	6	TERT	17741	chr5:1253719:-	SLC6A3	36459	chr5:1401101:-	INCL_NON_REF_SPLICE	YES	140	0	0.14	1	0.1556	0.0583	LOCAL_REARRANGEMENT:-:[97725],TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase,SLC6A3->Oncogene{Bushman},chr5:1392909-1445545:-,solute_carrier_family_6_member_3	SKMEL1_SKIN	0.14	1	0.2139	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	NSG1--MT-ND4L	16	2	NSG1	9226	chr4:4411386:+	MT-ND4L	15076	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2622	0	0.01	1	0.1556	0.0194	NSG1->chr4:4349867-4420785:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL1_SKIN	0.01	1	0.175	FALSE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	TADA2A--C17orf78	9	30	TADA2A	2741	chr17:35771477:+	C17orf78	27934	chr17:35734817:+	ONLY_REF_SPLICE	YES	35	0	0.53	1	0.0875	0.2917	{Klijn_CCL:Skin=1},LOCAL_REARRANGEMENT:+:[17303],TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,C17orf78->chr17:35732928-35749662:+,chromosome_17_open_reading_frame_78	SKMEL1_SKIN	0.53	1	0.3792	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	MT-ND6--MT-TE	15	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1458	0.0194	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL1_SKIN	1	1	0.1652	FALSE	499	1288	110	792	0	FALSE	ACH-000465
SKMEL1_SKIN	OTOA--METTL9	11	18	OTOA	5955	chr16:21698969:+	METTL9	40716	chr16:21629186:+	ONLY_REF_SPLICE	YES	0	1415	1	0.02	0.1069	0.175	LOCAL_REARRANGEMENT:+:[21041],OTOA->chr16:21689835-21772050:+,otoancorin,METTL9->chr16:21608539-21668794:+,methyltransferase_like_9	SKMEL1_SKIN	0.02	1	0.2819	TRUE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	OSBPL8--GALNT9	14	5	OSBPL8	1413	chr12:76953177:-	GALNT9	40086	chr12:132863016:-	ONLY_REF_SPLICE	YES	42	1	0.31	0.95	0.1361	0.0486	OSBPL8->chr12:76745577-76953589:-,oxysterol_binding_protein_like_8,GALNT9->chr12:132680924-132905935:-,polypeptide_N-acetylgalactosaminyltransferase_9	SKMEL1_SKIN	0.31	0.95	0.1847	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	MT-ND4--MT-ND4L	8	28	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	176	1	0.17	0.97	0.0778	0.2722	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL1_SKIN	0.17	0.97	0.35	FALSE	344	827	44	306	0	FALSE	ACH-000465
SKMEL1_SKIN	EGFLAM--CTD-2116N24.1	13	7	EGFLAM	1443	chr5:38258953:+	CTD-2116N24.1	35022	chr5:38183806:+	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.1264	0.0681	LOCAL_REARRANGEMENT:+:[74477],EGFLAM->EGF_like,_fibronectin_type_III_and_laminin_G_domains,chr5:38258511-38465123:+,CTD-2116N24.1->chr5:38025799-38184034:+	SKMEL1_SKIN	0.91	1	0.1945	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	OTOA--METTL9	7	30	OTOA	5866	chr16:21698880:+	METTL9	39525	chr16:21623966:+	INCL_NON_REF_SPLICE	YES	0	1237	1	0.03	0.0681	0.2917	LOCAL_REARRANGEMENT:+:[21041],OTOA->chr16:21689835-21772050:+,otoancorin,METTL9->chr16:21608539-21668794:+,methyltransferase_like_9	SKMEL1_SKIN	0.03	1	0.3598	TRUE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	AFF1--TECR	14	1	AFF1	6061	chr4:87928576:+	TECR	47173	chr19:14675598:+	ONLY_REF_SPLICE	YES	19	318	0.44	0.05	0.1361	0.0097	GTEx&tcga_normals:163/3694=4.41%,GTEx:1.69%,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,TECR->chr19:14627897-14676792:+,trans-2,3-enoyl-CoA_reductase	SKMEL1_SKIN	0.05	0.44	0.1458	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	C15orf57--CBX3	12	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	12	50	0.64	0.3	0.1167	0.0875	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKMEL1_SKIN	0.3	0.64	0.2042	TRUE	267	562	48	632	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ND4--MT-ND4L	3	44	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	4	1	0.92	0.98	0.0292	0.4278	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL1_SKIN	0.92	0.98	0.457	FALSE	344	821	44	306	0	FALSE	ACH-000465
SKMEL1_SKIN	CTSB--FDFT1	12	4	CTSB	13036	chr8:11708375:-	FDFT1	31188	chr8:11679259:+	ONLY_REF_SPLICE	YES	8541	736	0	0.02	0.1167	0.0389	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=2,Uterus=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1},LOCAL_INVERSION:-:+:[3215],CTSB->Oncogene{Bushman},cathepsin_B,chr8:11700033-11726957:-,FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1	SKMEL1_SKIN	0	0.02	0.1556	TRUE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ND4--MT-ND4L	6	28	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8	1	0.81	0.97	0.0583	0.2722	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL1_SKIN	0.81	0.97	0.3305	FALSE	344	826	44	306	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ND4--MT-ND4L	5	29	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2710	1	0.01	0.97	0.0486	0.2819	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL1_SKIN	0.01	0.97	0.3305	FALSE	344	827	44	306	0	FALSE	ACH-000465
SKMEL1_SKIN	USP15--RP11-351N6.1	12	0	USP15	1166	chr12:62654284:+	RP11-351N6.1	38444	chr5:26389792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1167	0	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,RP11-351N6.1->chr5:26382628-26399928:-	SKMEL1_SKIN	1	1	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	PPM1H--PRMT8	11	3	PPM1H	1546	chr12:63328272:-	PRMT8	25935	chr12:3649772:+	ONLY_REF_SPLICE	YES	26	0	0.35	1	0.1069	0.0292	PPM1H->chr12:63037762-63328817:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1H,PRMT8->chr12:3490515-3703139:+,protein_arginine_methyltransferase_8	SKMEL1_SKIN	0.35	1	0.1361	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	SLC1A5--MT-ND4L	9	9	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1968	0	0.01	1	0.0875	0.0875	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL1_SKIN	0.01	1	0.175	FALSE	0	0	0	189	0	FALSE	ACH-000465
SKMEL1_SKIN	ZC3H13--ERCC1	11	0	ZC3H13	13296	chr13:46559432:-	ERCC1	37499	chr19:45926639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1069	0	ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13,ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1	SKMEL1_SKIN	1	1	0.1069	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	BABAM1--OCEL1	8	9	BABAM1	2711	chr19:17379900:+	OCEL1	14948	chr19:17338649:+	ONLY_REF_SPLICE	YES	171	5	0.09	0.77	0.0778	0.0875	{Klijn_CCL:Skin=1},LOCAL_REARRANGEMENT:+:[38131],BABAM1->BRISC_and_BRCA1_A_complex_member_1,chr19:17378159-17392058:+,OCEL1->chr19:17337013-17340028:+,occludin/ELL_domain_containing_1	SKMEL1_SKIN	0.09	0.77	0.1653	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	MT-ND4--MT-ND4L	3	29	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8233	1	0	0.97	0.0292	0.2819	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL1_SKIN	0	0.97	0.3111	FALSE	343	822	44	305	0	FALSE	ACH-000465
SKMEL1_SKIN	CPB2-AS1--PYROXD2	9	3	CPB2-AS1	5815	chr13:46672916:+	PYROXD2	19605	chr10:100157255:-	ONLY_REF_SPLICE	YES	9	0	0.57	1	0.0875	0.0292	CPB2-AS1->CPB2_antisense_RNA_1,chr13:46626941-46687467:+,PYROXD2->chr10:100143322-100174941:-,pyridine_nucleotide-disulphide_oxidoreductase_domain_2	SKMEL1_SKIN	0.57	1	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	RP11-123O10.4--GRIP1	9	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0875	0.0097	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKMEL1_SKIN	1	1	0.0972	FALSE	416	2512	207	587	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ND6--MT-TE	3	20	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0.1944	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL1_SKIN	1	1	0.2236	FALSE	499	1288	110	792	0	FALSE	ACH-000465
SKMEL1_SKIN	RP11-444D3.1--SOX5	7	4	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	18	1	0.38	0.0681	0.0389	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL1_SKIN	0.38	1	0.107	TRUE	274	363	69	150	0	FALSE	ACH-000465
SKMEL1_SKIN	TERT--SLC6A3	8	0	TERT	14933	chr5:1258713:-	SLC6A3	36459	chr5:1401101:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0778	0	LOCAL_REARRANGEMENT:-:[97725],TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase,SLC6A3->Oncogene{Bushman},chr5:1392909-1445545:-,solute_carrier_family_6_member_3	SKMEL1_SKIN	1	1	0.0778	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	R3HDM2--RP1-90J4.3	7	1	R3HDM2	2356	chr12:57789532:-	RP1-90J4.3	33473	chr12:47879381:+	INCL_NON_REF_SPLICE	YES	2	10	0.8	0.44	0.0681	0.0097	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,RP1-90J4.3->chr12:47878472-47879505:+	SKMEL1_SKIN	0.44	0.8	0.0778	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0681	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL1_SKIN	1	1	0.0681	FALSE	13	9	0	364	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ND6--MT-TE	4	11	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0389	0.1069	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL1_SKIN	0.94	1	0.1458	FALSE	499	1288	110	792	0	FALSE	ACH-000465
SKMEL1_SKIN	OTOA--METTL9	5	7	OTOA	5954	chr16:21698968:+	METTL9	40814	chr16:21629284:+	INCL_NON_REF_SPLICE	YES	0	1356	1	0.01	0.0486	0.0681	LOCAL_REARRANGEMENT:+:[21041],OTOA->chr16:21689835-21772050:+,otoancorin,METTL9->chr16:21608539-21668794:+,methyltransferase_like_9	SKMEL1_SKIN	0.01	1	0.1167	TRUE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	TMED2--RP11-351O2.1	5	7	TMED2	5209	chr12:124074996:+	RP11-351O2.1	12661	chr12:128084156:+	ONLY_REF_SPLICE	YES	678	0	0.02	1	0.0486	0.0681	TMED2->chr12:124069078-124083116:+,transmembrane_p24_trafficking_protein_2,RP11-351O2.1->chr12:128082713-128084260:+	SKMEL1_SKIN	0.02	1	0.1167	TRUE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	C15orf57--CBX3	4	10	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	12	50	0.54	0.22	0.0389	0.0972	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKMEL1_SKIN	0.22	0.54	0.1361	TRUE	267	562	48	632	0	FALSE	ACH-000465
SKMEL1_SKIN	METTL9--CTB-31N19.2	6	2	METTL9	7344	chr16:21636436:+	CTB-31N19.2	17068	chr16:21561694:-	ONLY_REF_SPLICE	YES	1532	0	0.01	1	0.0583	0.0194	LOCAL_INVERSION:+:-:[46845],METTL9->chr16:21608539-21668794:+,methyltransferase_like_9,CTB-31N19.2->chr16:21544266-21561694:-	SKMEL1_SKIN	0.01	1	0.0777	FALSE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	CTSB--OR7E158P	5	5	CTSB	13036	chr8:11708375:-	OR7E158P	24220	chr8:11778219:-	INCL_NON_REF_SPLICE	YES	8541	0	0	1	0.0486	0.0486	LOCAL_REARRANGEMENT:-:[50452],CTSB->Oncogene{Bushman},cathepsin_B,chr8:11700033-11726957:-,OR7E158P->chr8:11777409-11778318:-,olfactory_receptor_family_7_subfamily_E_member_158_pseudogene	SKMEL1_SKIN	0	1	0.0972	FALSE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ATP6--MT-CO1	6	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7925	16257	0	0	0.0583	0.0097	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL1_SKIN	0	0	0.068	FALSE	183	104	9	328	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ATP6--MT-CO1	6	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7664	16158	0	0	0.0583	0.0097	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL1_SKIN	0	0	0.068	FALSE	183	104	9	328	0	FALSE	ACH-000465
SKMEL1_SKIN	CPB2-AS1--ZC3H13	6	0	CPB2-AS1	1160	chr13:46627100:+	ZC3H13	17040	chr13:46594692:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0583	0	LOCAL_INVERSION:+:-:[47],CPB2-AS1->CPB2_antisense_RNA_1,chr13:46626941-46687467:+,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	SKMEL1_SKIN	1	1	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	EGFLAM--CTD-2207A17.1	5	4	EGFLAM	1443	chr5:38258953:+	CTD-2207A17.1	33911	chr5:38151367:+	ONLY_REF_SPLICE	YES	2	3	0.82	0.75	0.0486	0.0389	EGFLAM->EGF_like,_fibronectin_type_III_and_laminin_G_domains,chr5:38258511-38465123:+,CTD-2207A17.1->chr5:38148582-38153817:+	SKMEL1_SKIN	0.75	0.82	0.0875	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	EPHB2--RP11-114H23.2	6	0	EPHB2	1205	chr1:23037536:+	RP11-114H23.2	27758	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0	EPHB2->EPH_receptor_B2,chr1:23037332-23241818:+,RP11-114H23.2->chr12:76087790-76092596:-	SKMEL1_SKIN	1	1	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	LIF--MT-CO1	6	0	LIF	3257	chr22:30639841:-	MT-CO1	10305	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0	LIF->chr22:30636436-30642840:-,leukemia_inhibitory_factor,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL1_SKIN	1	1	0.0583	FALSE	0	0	0	8	0	FALSE	ACH-000465
SKMEL1_SKIN	ZBTB26--AGAP2	5	2	ZBTB26	1060	chr9:125693720:-	AGAP2	13231	chr12:58129210:-	INCL_NON_REF_SPLICE	YES	0	4	1	0.64	0.0486	0.0194	ZBTB26->chr9:125677845-125693779:-,zinc_finger_and_BTB_domain_containing_26,AGAP2->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_2,Oncogene{Bushman},chr12:58118980-58135940:-	SKMEL1_SKIN	0.64	1	0.068	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	MT-ATP6--MT-CO1	5	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9467	16158	0	0	0.0486	0.0097	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL1_SKIN	0	0	0.0583	FALSE	183	104	9	328	0	FALSE	ACH-000465
SKMEL1_SKIN	NEMF--SOS2	5	1	NEMF	27383	chr14:50262509:-	SOS2	46380	chr14:50641270:-	ONLY_REF_SPLICE	YES	75	32	0.07	0.16	0.0486	0.0097	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-	SKMEL1_SKIN	0.07	0.16	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	ZC3H13--LCP1	5	0	ZC3H13	1356	chr13:46626539:-	LCP1	39147	chr13:46733821:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0	LOCAL_REARRANGEMENT:-:[73161],ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13,LCP1->Oncogene{Bushman},chr13:46700055-46786006:-,lymphocyte_cytosolic_protein_1	SKMEL1_SKIN	1	1	0.0486	TRUE	0	0	0	2	0	TRUE	ACH-000465
SKMEL1_SKIN	MT-TA--MT-TC	4	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0.0292	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL1_SKIN	1	1	0.0681	FALSE	462	80	0	856	0	FALSE	ACH-000465
SKMEL1_SKIN	EGFLAM--CTD-2207A17.1	4	2	EGFLAM	1443	chr5:38258953:+	CTD-2207A17.1	34216	chr5:38151672:+	INCL_NON_REF_SPLICE	YES	2	4	0.75	0.6	0.0389	0.0194	EGFLAM->EGF_like,_fibronectin_type_III_and_laminin_G_domains,chr5:38258511-38465123:+,CTD-2207A17.1->chr5:38148582-38153817:+	SKMEL1_SKIN	0.6	0.75	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	LDLRAD3--PRR5L	4	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	17578	chr11:36317840:+	INCL_NON_REF_SPLICE	YES	113	0	0.04	1	0.0389	0.0097	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	SKMEL1_SKIN	0.04	1	0.0486	FALSE	0	52	1	15	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ATP6--MT-CO1	3	5	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	4613	14831	0	0	0.0292	0.0486	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL1_SKIN	0	0	0.0778	FALSE	183	104	9	328	0	FALSE	ACH-000465
SKMEL1_SKIN	RP11-141M1.3--STARD13	4	1	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	8	1	0.38	0.0389	0.0097	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMEL1_SKIN	0.38	1	0.0486	FALSE	49	120	16	70	0	FALSE	ACH-000465
SKMEL1_SKIN	RP11-351N6.1--RP11-417L19.4	4	1	RP11-351N6.1	2227	chr5:26389709:-	RP11-417L19.4	8440	chr12:132413884:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0.0097	RP11-351N6.1->chr5:26382628-26399928:-,RP11-417L19.4->chr12:132409281-132413896:-	SKMEL1_SKIN	1	1	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	RP11-444D3.1--SOX5	3	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	27	1	0.23	0.0292	0.0486	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL1_SKIN	0.23	1	0.0778	TRUE	160	277	29	98	0	FALSE	ACH-000465
SKMEL1_SKIN	TMED2--TMEM132B	4	1	TMED2	5209	chr12:124074996:+	TMEM132B	27606	chr12:126136987:+	ONLY_REF_SPLICE	YES	678	0	0.01	1	0.0389	0.0097	TMED2->chr12:124069078-124083116:+,transmembrane_p24_trafficking_protein_2,TMEM132B->chr12:125671382-126146917:+,transmembrane_protein_132B	SKMEL1_SKIN	0.01	1	0.0486	FALSE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL1_SKIN	1	1	0.0389	FALSE	462	80	0	856	0	FALSE	ACH-000465
SKMEL1_SKIN	SMG6--METTL16	4	0	SMG6	9695	chr17:2185941:-	METTL16	49424	chr17:2344853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0389	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-,METTL16->chr17:2308856-2415185:-,methyltransferase_like_16	SKMEL1_SKIN	1	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	STAT5B--TYK2	4	0	STAT5B	1460	chr17:40428266:-	TYK2	23280	chr19:10490455:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0389	0	STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B,TYK2->chr19:10461209-10491352:-,tyrosine_kinase_2	SKMEL1_SKIN	1	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	MT-ND4--MT-ND4L	3	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.75	0.0292	0.0292	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL1_SKIN	0.75	1	0.0584	FALSE	344	821	44	306	0	FALSE	ACH-000465
SKMEL1_SKIN	PPP1R12A--PSEN1	3	3	PPP1R12A	1766	chr12:80328475:-	PSEN1	59426	chr14:73683834:+	ONLY_REF_SPLICE	YES	65	27	0.08	0.18	0.0292	0.0292	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,PSEN1->chr14:73603126-73690399:+,presenilin_1	SKMEL1_SKIN	0.08	0.18	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	GCN1L1--LINC00508	3	2	GCN1L1	9013	chr12:120612965:-	LINC00508	48759	chr12:128425280:-	ONLY_REF_SPLICE	YES	117	0	0.04	1	0.0292	0.0194	GCN1L1->chr12:120565007-120632513:-,LINC00508->chr12:128425140-128434705:-,long_intergenic_non-protein_coding_RNA_508	SKMEL1_SKIN	0.04	1	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	ATP6V0E1--ERGIC1	3	1	ATP6V0E1	2256	chr5:172421825:+	ERGIC1	15393	chr5:172336670:+	ONLY_REF_SPLICE	YES	691	56	0.01	0.07	0.0292	0.0097	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[31072],ATP6V0E1->ATPase_H+_transporting_V0_subunit_e1,chr5:172410760-172462448:+,ERGIC1->chr5:172261278-172379688:+,endoplasmic_reticulum-golgi_intermediate_compartment_1	SKMEL1_SKIN	0.01	0.07	0.0389	FALSE	0	0	0	2	0	FALSE	ACH-000465
SKMEL1_SKIN	GATS--PILRB	3	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	7	118	0.36	0.03	0.0292	0.0097	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	SKMEL1_SKIN	0.03	0.36	0.0389	TRUE	57	41	2	35	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ATP6--MT-CO1	3	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	9376	14678	0	0	0.0292	0.0097	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL1_SKIN	0	0	0.0389	FALSE	183	104	9	328	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7893	16158	0	0	0.0292	0.0097	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL1_SKIN	0	0	0.0389	FALSE	183	104	9	328	0	FALSE	ACH-000465
SKMEL1_SKIN	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	52	1	0.07	0.0292	0.0097	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKMEL1_SKIN	0.07	1	0.0389	FALSE	16	356	14	466	0	FALSE	ACH-000465
SKMEL1_SKIN	RP11-141M1.3--STARD13	3	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	8	1	0.33	0.0292	0.0097	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMEL1_SKIN	0.33	1	0.0389	FALSE	141	264	50	91	0	FALSE	ACH-000465
SKMEL1_SKIN	APP--MT-ND2	3	0	APP	11619	chr21:27394230:-	MT-ND2	32998	chrM:5292:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SKMEL1_SKIN	1	1	0.0292	FALSE	0	1	0	51	0	FALSE	ACH-000465
SKMEL1_SKIN	CPB2-AS1--ZC3H13	3	0	CPB2-AS1	1160	chr13:46627100:+	ZC3H13	18150	chr13:46585689:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_INVERSION:+:-:[47],CPB2-AS1->CPB2_antisense_RNA_1,chr13:46626941-46687467:+,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	SKMEL1_SKIN	1	1	0.0292	TRUE	0	0	0	2	0	TRUE	ACH-000465
SKMEL1_SKIN	EPHB2--RP11-114H23.2	3	0	EPHB2	1205	chr1:23037536:+	RP11-114H23.2	27935	chr12:76088550:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	EPHB2->EPH_receptor_B2,chr1:23037332-23241818:+,RP11-114H23.2->chr12:76087790-76092596:-	SKMEL1_SKIN	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	KIAA1984--CDH18	2	4	KIAA1984	4889	chr9:139697238:+	CDH18	14604	chr5:19992123:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0194	0.0389	KIAA1984->chr9:139690802-139702193:+,CDH18->cadherin_18,chr5:19473060-20575982:-	SKMEL1_SKIN	0.86	1	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	MT-ATP6--MT-CO1	3	0	MT-ATP6	1074	chrM:8600:+	MT-CO1	5869	chrM:7091:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL1_SKIN	1	1	0.0292	FALSE	183	104	9	328	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL1_SKIN	1	1	0.0292	FALSE	344	821	44	306	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ND6--MT-ND5	3	0	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SKMEL1_SKIN	1	1	0.0292	FALSE	101	855	57	72	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL1_SKIN	1	1	0.0292	FALSE	499	1288	110	792	0	FALSE	ACH-000465
SKMEL1_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL1_SKIN	1	1	0.0292	FALSE	499	1288	110	792	0	FALSE	ACH-000465
SKMEL1_SKIN	RAD21-AS1--MT-CO2	3	0	RAD21-AS1	1341	chr8:117887003:+	MT-CO2	6586	chrM:7726:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	RAD21-AS1->RAD21_antisense_RNA_1,chr8:117886663-117889107:+,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL1_SKIN	1	1	0.0292	FALSE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	RCC1--DHRSX	3	0	RCC1	2175	chr1:28834672:+	DHRSX	29742	chrX:2161271:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked	SKMEL1_SKIN	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKMEL1_SKIN	1	1	0.0292	TRUE	465	1949	224	605	0	FALSE	ACH-000465
SKMEL1_SKIN	VTI1A--RP11-57H14.3	3	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SKMEL1_SKIN	1	1	0.0292	FALSE	272	151	14	158	0	FALSE	ACH-000465
SKMEL1_SKIN	CTD-2547E10.2--IGSF6	2	2	CTD-2547E10.2	9565	chr16:21487920:-	IGSF6	33704	chr16:21658813:-	ONLY_REF_SPLICE	YES	58	0	0.06	1	0.0194	0.0194	CTD-2547E10.2->chr16:21458004-21531765:-,IGSF6->chr16:21652609-21663981:-,immunoglobulin_superfamily_member_6	SKMEL1_SKIN	0.06	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	CTSB--FDFT1	2	2	CTSB	2448	chr8:11725510:-	FDFT1	29005	chr8:11666303:+	ONLY_REF_SPLICE	YES	301	1017	0.01	0	0.0194	0.0194	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=2,Uterus=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1},LOCAL_INVERSION:-:+:[3215],CTSB->Oncogene{Bushman},cathepsin_B,chr8:11700033-11726957:-,FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1	SKMEL1_SKIN	0	0.01	0.0388	FALSE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	OTOA--METTL9	2	2	OTOA	4719	chr16:21696682:+	METTL9	40716	chr16:21629186:+	ONLY_REF_SPLICE	YES	54	1415	0.07	0	0.0194	0.0194	LOCAL_REARRANGEMENT:+:[21041],OTOA->chr16:21689835-21772050:+,otoancorin,METTL9->chr16:21608539-21668794:+,methyltransferase_like_9	SKMEL1_SKIN	0	0.07	0.0388	FALSE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	PRKCA--CEP95	2	1	PRKCA	4995	chr17:64492401:+	CEP95	43965	chr17:62517520:+	ONLY_REF_SPLICE	YES	8	27	0.27	0.1	0.0194	0.0097	PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha,CEP95->centrosomal_protein_95,chr17:62502706-62538579:+	SKMEL1_SKIN	0.1	0.27	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	PRR4--RP11-575F12.1	2	1	PRR4	1192	chr12:11324021:-	RP11-575F12.1	27951	chr12:127485195:-	ONLY_REF_SPLICE	YES	19	0	0.14	1	0.0194	0.0097	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),RP11-575F12.1->chr12:127399766-127544946:-	SKMEL1_SKIN	0.14	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	BABAM1--EXOSC10	2	0	BABAM1	1178	chr19:17378336:+	EXOSC10	25447	chr1:11137005:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	BABAM1->BRISC_and_BRCA1_A_complex_member_1,chr19:17378159-17392058:+,EXOSC10->chr1:11126675-11159938:-,exosome_component_10	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	CPB2-AS1--ZC3H13	2	0	CPB2-AS1	1160	chr13:46627100:+	ZC3H13	23051	chr13:46563232:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_INVERSION:+:-:[47],CPB2-AS1->CPB2_antisense_RNA_1,chr13:46626941-46687467:+,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	2	0	TRUE	ACH-000465
SKMEL1_SKIN	EGFLAM--CTD-2207A17.1	1	4	EGFLAM	2629	chr5:38305719:+	CTD-2207A17.1	33911	chr5:38151367:+	ONLY_REF_SPLICE	NO	1	3	0.83	0.62	0.0097	0.0389	EGFLAM->EGF_like,_fibronectin_type_III_and_laminin_G_domains,chr5:38258511-38465123:+,CTD-2207A17.1->chr5:38148582-38153817:+	SKMEL1_SKIN	0.62	0.83	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	MFN2--PLOD1	2	0	MFN2	2609	chr1:12042171:+	PLOD1	30722	chr1:12016974:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_REARRANGEMENT:+:[4643],MFN2->chr1:12040238-12073571:+,mitofusin_2,PLOD1->chr1:11994262-12035595:+,procollagen-lysine,2-oxoglutarate_5-dioxygenase_1	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	MGAT5--TMEM163	2	0	MGAT5	16255	chr2:135170586:+	TMEM163	30846	chr2:135470889:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_INVERSION:+:-:[1138],MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,TMEM163->chr2:135213330-135476570:-,transmembrane_protein_163	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	PLXNB1--ATRIP	2	0	PLXNB1	12607	chr3:48456992:-	ATRIP	35209	chr3:48505144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_INVERSION:-:+:[16520],PLXNB1->Oncogene{Bushman},chr3:48445261-48471594:-,plexin_B1,ATRIP->ATR_interacting_protein,chr3:48488114-48507115:+	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	PTPRN2--PINX1	2	0	PTPRN2	25202	chr7:157361594:-	PINX1	41928	chr8:10623426:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	RP11-114H23.1--RP11-114H23.2	2	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SKMEL1_SKIN	1	1	0.0194	FALSE	81	155	12	160	0	FALSE	ACH-000465
SKMEL1_SKIN	RP5-1039K5.16--BAIAP2L2	2	0	RP5-1039K5.16	1064	chr22:38430172:-	BAIAP2L2	15035	chr22:38483271:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_REARRANGEMENT:-:[50661],RP5-1039K5.16->chr22:38428172-38430235:-,BAIAP2L2->BAI1_associated_protein_2_like_2,chr22:38480896-38506677:-	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	SPARC--GLRA1	2	0	SPARC	5825	chr5:151054173:-	GLRA1	22573	chr5:151239569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,GLRA1->chr5:151202074-151304403:-,glycine_receptor_alpha_1	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	STAT5B--TYK2	2	0	STAT5B	1460	chr17:40428266:-	TYK2	23370	chr19:10490365:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B,TYK2->chr19:10461209-10491352:-,tyrosine_kinase_2	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	VPS37B--ABCB9	2	0	VPS37B	1493	chr12:123380499:-	ABCB9	30301	chr12:123430769:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_REARRANGEMENT:-:[24507],VPS37B->VPS37B,_ESCRT-I_subunit,chr12:123349882-123380991:-,ABCB9->ATP_binding_cassette_subfamily_B_member_9,chr12:123405498-123466196:-	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	ZC3H13--LCP1	2	0	ZC3H13	1828	chr13:46626067:-	LCP1	39147	chr13:46733821:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_REARRANGEMENT:-:[73161],ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13,LCP1->Oncogene{Bushman},chr13:46700055-46786006:-,lymphocyte_cytosolic_protein_1	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	2	0	TRUE	ACH-000465
SKMEL1_SKIN	AFF1--C4orf36	1	2	AFF1	6061	chr4:87928576:+	C4orf36	40147	chr4:87847478:-	ONLY_REF_SPLICE	YES	19	14	0.14	0.18	0.0097	0.0194	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS_OVERLAP:+:-:[1200],AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,C4orf36->chr4:87797358-87857354:-,chromosome_4_open_reading_frame_36	SKMEL1_SKIN	0.14	0.18	0.0291	FALSE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	ZBTB26--AGAP2	1	2	ZBTB26	1437	chr9:125693343:-	AGAP2	13231	chr12:58129210:-	ONLY_REF_SPLICE	NO	1	4	0.75	0.43	0.0097	0.0194	ZBTB26->chr9:125677845-125693779:-,zinc_finger_and_BTB_domain_containing_26,AGAP2->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_2,Oncogene{Bushman},chr12:58118980-58135940:-	SKMEL1_SKIN	0.43	0.75	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	BCAS3--PPM1D	1	1	BCAS3	3605	chr17:58761397:+	PPM1D	62388	chr17:58700882:+	ONLY_REF_SPLICE	YES	23	22	0.08	0.08	0.0097	0.0097	LOCAL_REARRANGEMENT:+:[12965],BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,PPM1D->Oncogene{Bushman},chr17:58677544-58741849:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1D	SKMEL1_SKIN	0.08	0.08	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	CTSB--FDFT1	1	1	CTSB	2448	chr8:11725510:-	FDFT1	33533	chr8:11687753:+	ONLY_REF_SPLICE	YES	301	813	0.01	0	0.0097	0.0097	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=2,Uterus=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1},LOCAL_INVERSION:-:+:[3215],CTSB->Oncogene{Bushman},cathepsin_B,chr8:11700033-11726957:-,FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1	SKMEL1_SKIN	0	0.01	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	HIP1--LCMT1	1	1	HIP1	1162	chr7:75368119:-	LCMT1	51297	chr16:25182035:+	ONLY_REF_SPLICE	YES	2	88	0.5	0.02	0.0097	0.0097	HIP1->Oncogene{Bushman},chr7:75162621-75368280:-,huntingtin_interacting_protein_1,LCMT1->chr16:25123050-25189552:+,leucine_carboxyl_methyltransferase_1	SKMEL1_SKIN	0.02	0.5	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	MEIS1--AC092669.2	1	1	MEIS1	14433	chr2:66691352:+	AC092669.2	30797	chr2:66554794:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0097	0.0097	MEIS1->Meis_homeobox_1,Oncogene{Bushman},chr2:66660584-66801001:+,AC092669.2->chr2:66554481-66555973:+	SKMEL1_SKIN	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	PPP4R1--ALDH1A3	1	1	PPP4R1	6029	chr18:9595016:-	ALDH1A3	44957	chr15:101448613:+	ONLY_REF_SPLICE	YES	42	4594	0.05	0	0.0097	0.0097	PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,ALDH1A3->aldehyde_dehydrogenase_1_family_member_A3,chr15:101417919-101456831:+	SKMEL1_SKIN	0	0.05	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000465
SKMEL1_SKIN	PRR4--RP11-575F12.1	1	1	PRR4	2363	chr12:11273609:-	RP11-575F12.1	27951	chr12:127485195:-	ONLY_REF_SPLICE	YES	17	0	0.11	1	0.0097	0.0097	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),RP11-575F12.1->chr12:127399766-127544946:-	SKMEL1_SKIN	0.11	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	RP11-96H19.1--NELL2	1	1	RP11-96H19.1	2709	chr12:46781755:+	NELL2	12625	chr12:45269683:-	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0097	0.0097	RP11-96H19.1->chr12:46777462-46850051:+,NELL2->chr12:44902058-45315631:-,neural_EGFL_like_2	SKMEL1_SKIN	0.5	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
SKMEL1_SKIN	VPRBP--DOCK3	1	1	VPRBP	8573	chr3:51474986:-	DOCK3	62301	chr3:51367569:+	ONLY_REF_SPLICE	YES	5	3	0.29	0.4	0.0097	0.0097	LOCAL_INVERSION:-:+:[11669],VPRBP->Vpr_(HIV-1)_binding_protein,chr3:51433298-51534010:-,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	SKMEL1_SKIN	0.29	0.4	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000465
NCIH520_LUNG	RCAN1--RUNX1	1563	325	RCAN1	1383	chr21:35987059:-	RUNX1	52846	chr21:36171759:-	ONLY_REF_SPLICE	YES	74	100	0.96	0.95	14.2551	2.9641	RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	NCIH520_LUNG	0.95	0.96	17.2192	TRUE	0	1	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	RCAN1--RUNX1	652	623	RCAN1	5614	chr21:35898961:-	RUNX1	52846	chr21:36171759:-	ONLY_REF_SPLICE	YES	98	100	0.93	0.93	5.9464	5.682	RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	NCIH520_LUNG	0.93	0.93	11.6284	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	348	146	NKD1	10610	chr16:50667260:+	ADCY7	30123	chr16:50334630:+	INCL_NON_REF_SPLICE	YES	2016	13	0.2	0.97	3.1739	1.3316	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0.2	0.97	4.5055	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	KDM6A--AL592528.1	192	62	KDM6A	1477	chrX:44733233:+	AL592528.1	35789	chr21:47252572:-	ONLY_REF_SPLICE	YES	1	0	1	1	1.7511	0.5655	KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A,AL592528.1->chr21:47247875-47256333:-	NCIH520_LUNG	1	1	2.3166	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	124	147	NKD1	10610	chr16:50667260:+	ADCY7	30119	chr16:50334626:+	INCL_NON_REF_SPLICE	YES	2016	11	0.12	0.96	1.1309	1.3407	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0.12	0.96	2.4716	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	RCAN1--RUNX1	46	338	RCAN1	1865	chr21:35986577:-	RUNX1	52846	chr21:36171759:-	ONLY_REF_SPLICE	YES	90	100	0.81	0.79	0.4195	3.0827	RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	NCIH520_LUNG	0.79	0.81	3.5022	TRUE	0	1	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	ZNF252P--ATAD2	127	3	ZNF252P	1079	chr8:146228203:-	ATAD2	37596	chr8:124351686:-	ONLY_REF_SPLICE	YES	0	149	1	0.47	1.1583	0.0274	ZNF252P->chr8:146198975-146228281:-,zinc_finger_protein_252,_pseudogene,ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-	NCIH520_LUNG	0.47	1	1.1857	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	TIMM23B--LINC00843	122	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1127	0.1915	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH520_LUNG	0.99	1	1.3042	TRUE	508	994	45	981	0	FALSE	ACH-000395
NCIH520_LUNG	SHISA9--U91319.1	99	21	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	57	0	0.68	1	0.9029	0.1915	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	NCIH520_LUNG	0.68	1	1.0944	FALSE	4	37	0	19	0	FALSE	ACH-000395
NCIH520_LUNG	RCAN1--RUNX1	7	338	RCAN1	2356	chr21:35986086:-	RUNX1	52846	chr21:36171759:-	ONLY_REF_SPLICE	YES	90	100	0.79	0.78	0.0638	3.0827	RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	NCIH520_LUNG	0.78	0.79	3.1465	TRUE	0	1	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	SUPV3L1--VPS26A	79	46	SUPV3L1	17116	chr10:70967697:+	VPS26A	28035	chr10:70922162:+	ONLY_REF_SPLICE	YES	71	184	0.64	0.4	0.7205	0.4195	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[7371],SUPV3L1->Suv3_like_RNA_helicase,chr10:70939988-70968855:+,VPS26A->VPS26_retromer_complex_component_A,chr10:70883268-70932617:+	NCIH520_LUNG	0.4	0.64	1.14	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	KANSL1--ARL17B	78	20	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	38	135	0.72	0.42	0.7114	0.1824	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH520_LUNG	0.42	0.72	0.8938	TRUE	181	1564	124	196	0	FALSE	ACH-000395
NCIH520_LUNG	ATRX--MAGT1	76	14	ATRX	20367	chrX:76907604:-	MAGT1	57508	chrX:77086392:-	ONLY_REF_SPLICE	YES	53	144	0.63	0.38	0.6931	0.1277	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[40159],ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,MAGT1->chrX:77081861-77151090:-,magnesium_transporter_1	NCIH520_LUNG	0.38	0.63	0.8208	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	TIMM23--RP11-464F9.1	75	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	248	6	0.23	0.93	0.684	0.0091	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH520_LUNG	0.23	0.93	0.6931	TRUE	519	3926	326	965	0	FALSE	ACH-000395
NCIH520_LUNG	MT-TA--MT-TN	70	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6384	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH520_LUNG	1	1	0.6384	FALSE	369	2501	205	193	0	FALSE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	25	152	NKD1	10669	chr16:50667319:+	ADCY7	30119	chr16:50334626:+	INCL_NON_REF_SPLICE	YES	2106	11	0.08	0.94	0.228	1.3863	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0.08	0.94	1.6143	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	PAK1--TENM4	58	16	PAK1	2084	chr11:77184597:-	TENM4	49607	chr11:78614568:-	ONLY_REF_SPLICE	YES	103	0	0.42	1	0.529	0.1459	PAK1->Oncogene{Bushman},chr11:77032752-77185680:-,p21_(RAC1)_activated_kinase_1,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	NCIH520_LUNG	0.42	1	0.6749	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	51	31	NKD1	9669	chr16:50666319:+	ADCY7	30119	chr16:50334626:+	ONLY_REF_SPLICE	YES	1735	11	0.05	0.88	0.4651	0.2827	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0.05	0.88	0.7478	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	ZNF654--HMGB2	47	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4287	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH520_LUNG	1	1	0.4287	TRUE	0	0	0	518	0	FALSE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	3	154	NKD1	11100	chr16:50667750:+	ADCY7	30119	chr16:50334626:+	INCL_NON_REF_SPLICE	YES	695	11	0.18	0.93	0.0274	1.4045	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0.18	0.93	1.4319	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	3	151	NKD1	10669	chr16:50667319:+	ADCY7	30123	chr16:50334630:+	INCL_NON_REF_SPLICE	YES	2106	13	0.07	0.92	0.0274	1.3772	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0.07	0.92	1.4046	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	DOK6--CCDC102B	34	7	DOK6	1256	chr18:67068546:+	CCDC102B	38090	chr18:66541906:+	ONLY_REF_SPLICE	YES	6	0	0.87	1	0.3101	0.0638	{Klijn_CCL:Lung=1},DOK6->chr18:67068291-67516323:+,docking_protein_6,CCDC102B->chr18:66382446-66722426:+,coiled-coil_domain_containing_102B	NCIH520_LUNG	0.87	1	0.3739	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	BPTF--ARSG	32	9	BPTF	3637	chr17:65850878:+	ARSG	51077	chr17:66303084:+	ONLY_REF_SPLICE	YES	23	0	0.64	1	0.2919	0.0821	BPTF->bromodomain_PHD_finger_transcription_factor,chr17:65821640-65980494:+,ARSG->arylsulfatase_G,chr17:66255323-66418872:+	NCIH520_LUNG	0.64	1	0.374	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	RP11-6N13.1--CTD-2374C24.1	30	3	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2736	0.0274	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH520_LUNG	0.97	1	0.301	TRUE	5	4	0	46	0	FALSE	ACH-000395
NCIH520_LUNG	MT-TA--MT-TN	9	65	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0821	0.5928	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH520_LUNG	1	1	0.6749	FALSE	369	2501	205	193	0	FALSE	ACH-000395
NCIH520_LUNG	MT-TA--MT-TN	15	34	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1368	0.3101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH520_LUNG	1	1	0.4469	FALSE	369	2501	205	193	0	FALSE	ACH-000395
NCIH520_LUNG	MT-TA--MT-TN	16	30	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1459	0.2736	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH520_LUNG	1	1	0.4195	FALSE	369	2501	205	193	0	FALSE	ACH-000395
NCIH520_LUNG	KMT2E--LETM2	20	12	KMT2E	16085	chr7:104722244:+	LETM2	42440	chr8:38260043:+	ONLY_REF_SPLICE	YES	29	1	0.52	0.97	0.1824	0.1094	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,LETM2->chr8:38243725-38267045:+,leucine_zipper_and_EF-hand_containing_transmembrane_protein_2	NCIH520_LUNG	0.52	0.97	0.2918	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	MT-CO3--MT-ATP6	9	55	MT-CO3	1126	chrM:9332:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	2	2	0.97	0.97	0.0821	0.5016	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH520_LUNG	0.97	0.97	0.5837	FALSE	189	492	56	216	0	FALSE	ACH-000395
NCIH520_LUNG	MT-TA--MT-TC	22	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2006	0.0274	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH520_LUNG	1	1	0.228	FALSE	462	80	0	856	0	FALSE	ACH-000395
NCIH520_LUNG	MT-CO3--MT-ATP6	7	57	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3	0	0.96	1	0.0638	0.5199	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH520_LUNG	0.96	1	0.5837	FALSE	189	492	56	216	0	FALSE	ACH-000395
NCIH520_LUNG	MT-ND6--MT-TE	20	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1824	0.0365	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH520_LUNG	1	1	0.2189	FALSE	499	1288	110	792	0	FALSE	ACH-000395
NCIH520_LUNG	MT-TA--MT-TN	8	44	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0.4013	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH520_LUNG	1	1	0.4743	FALSE	369	2501	205	193	0	FALSE	ACH-000395
NCIH520_LUNG	MT-CO3--MT-ATP6	4	56	MT-CO3	1220	chrM:9426:+	MT-ATP6	4971	chrM:8713:+	INCL_NON_REF_SPLICE	YES	3	6	0.95	0.91	0.0365	0.5107	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH520_LUNG	0.91	0.95	0.5472	FALSE	189	492	56	216	0	FALSE	ACH-000395
NCIH520_LUNG	MT-CO3--MT-ATP6	4	56	MT-CO3	1533	chrM:9739:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	2	8	0.97	0.88	0.0365	0.5107	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH520_LUNG	0.88	0.97	0.5472	FALSE	189	492	56	216	0	FALSE	ACH-000395
NCIH520_LUNG	MT-CO3--MT-ATP6	4	55	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.97	0.0365	0.5016	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH520_LUNG	0.97	1	0.5381	FALSE	189	492	56	216	0	FALSE	ACH-000395
NCIH520_LUNG	NPM1P24--SET	16	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1459	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH520_LUNG	1	1	0.1459	TRUE	0	0	0	434	0	FALSE	ACH-000395
NCIH520_LUNG	RCAN1--RUNX1	9	27	RCAN1	1383	chr21:35987059:-	RUNX1	54008	chr21:36164907:-	ONLY_REF_SPLICE	YES	74	392	0.33	0.08	0.0821	0.2462	RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	NCIH520_LUNG	0.08	0.33	0.3283	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	SUPV3L1--VPS26A	3	51	SUPV3L1	17854	chr10:70968435:+	VPS26A	28035	chr10:70922162:+	INCL_NON_REF_SPLICE	YES	77	184	0.41	0.23	0.0274	0.4651	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[7371],SUPV3L1->Suv3_like_RNA_helicase,chr10:70939988-70968855:+,VPS26A->VPS26_retromer_complex_component_A,chr10:70883268-70932617:+	NCIH520_LUNG	0.23	0.41	0.4925	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	GTF2F2--LINC00407	14	2	GTF2F2	2281	chr13:45710941:+	LINC00407	18011	chr13:45275056:+	ONLY_REF_SPLICE	YES	98	0	0.14	1	0.1277	0.0182	GTF2F2->chr13:45694650-45858237:+,general_transcription_factor_IIF_subunit_2,LINC00407->chr13:45225948-45275152:+,long_intergenic_non-protein_coding_RNA_407	NCIH520_LUNG	0.14	1	0.1459	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	MT-TA--MT-TN	10	16	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0912	0.1459	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH520_LUNG	1	1	0.2371	FALSE	369	2501	205	193	0	FALSE	ACH-000395
NCIH520_LUNG	SHISA9--U91319.1	8	21	SHISA9	9974	chr16:13297406:+	U91319.1	21484	chr16:13352190:+	ONLY_REF_SPLICE	YES	57	0	0.34	1	0.073	0.1915	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	NCIH520_LUNG	0.34	1	0.2645	FALSE	0	14	0	12	0	FALSE	ACH-000395
NCIH520_LUNG	WDR83OS--FBXW9	10	13	WDR83OS	2294	chr19:12780877:-	FBXW9	11447	chr19:12800924:-	INCL_NON_REF_SPLICE	YES	28	26	0.45	0.47	0.0912	0.1186	LOCAL_REARRANGEMENT:-:[16697],WDR83OS->WD_repeat_domain_83_opposite_strand,chr19:12778885-12782170:-,FBXW9->F-box_and_WD_repeat_domain_containing_9,chr19:12798867-12807457:-	NCIH520_LUNG	0.45	0.47	0.2098	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	MT-ND6--MT-TE	9	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0821	0.0821	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH520_LUNG	0.9	1	0.1642	FALSE	499	1288	110	792	0	FALSE	ACH-000395
NCIH520_LUNG	MT-TA--MT-TN	11	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1003	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH520_LUNG	1	1	0.1003	FALSE	369	2501	205	193	0	FALSE	ACH-000395
NCIH520_LUNG	EEF2--RPS28	10	2	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	3653	0	0	1	0.0912	0.0182	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH520_LUNG	0	1	0.1094	TRUE	0	0	0	100	0	FALSE	ACH-000395
NCIH520_LUNG	C15orf57--CBX3	7	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	33	26	0.38	0.43	0.0638	0.1186	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH520_LUNG	0.38	0.43	0.1824	TRUE	267	562	48	632	0	FALSE	ACH-000395
NCIH520_LUNG	ATRX--MAGT1	6	15	ATRX	20367	chrX:76907604:-	MAGT1	56433	chrX:77096817:-	ONLY_REF_SPLICE	YES	53	136	0.28	0.13	0.0547	0.1368	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[40159],ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,MAGT1->chrX:77081861-77151090:-,magnesium_transporter_1	NCIH520_LUNG	0.13	0.28	0.1915	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	MT-ND6--MT-TE	4	23	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0.2098	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH520_LUNG	1	1	0.2463	FALSE	499	1288	110	792	0	FALSE	ACH-000395
NCIH520_LUNG	EIF1--RPS28	9	1	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	6	0	0.62	1	0.0821	0.0091	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH520_LUNG	0.62	1	0.0912	TRUE	0	0	0	81	0	FALSE	ACH-000395
NCIH520_LUNG	NEIL1--PPCDC	9	1	NEIL1	2045	chr15:75640340:+	PPCDC	15153	chr15:75336727:+	ONLY_REF_SPLICE	YES	2	64	0.83	0.14	0.0821	0.0091	NEIL1->Oncogene{Bushman},chr15:75639296-75647592:+,nei_like_DNA_glycosylase_1,PPCDC->chr15:75315896-75409803:+,phosphopantothenoylcysteine_decarboxylase	NCIH520_LUNG	0.14	0.83	0.0912	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	MT-ND6--MT-TE	8	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0.0365	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH520_LUNG	1	1	0.1095	FALSE	499	1288	110	792	0	FALSE	ACH-000395
NCIH520_LUNG	MT-ND6--MT-TE	6	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0547	0.0912	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH520_LUNG	1	1	0.1459	FALSE	499	1288	110	792	0	FALSE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	5	14	NKD1	10610	chr16:50667260:+	ADCY7	32369	chr16:50338271:+	INCL_NON_REF_SPLICE	YES	2016	157	0.01	0.11	0.0456	0.1277	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0.01	0.11	0.1733	TRUE	0	0	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	SLC1A5--MT-ND4L	8	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	818	0	0.01	1	0.073	0.0091	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH520_LUNG	0.01	1	0.0821	FALSE	0	0	0	189	0	FALSE	ACH-000395
NCIH520_LUNG	TIAM1--SCAF4	8	1	TIAM1	5426	chr21:32711558:-	SCAF4	42072	chr21:33078670:-	ONLY_REF_SPLICE	YES	17	23	0.35	0.28	0.073	0.0091	TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-,SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-	NCIH520_LUNG	0.28	0.35	0.0821	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	MT-TA--MT-TN	8	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH520_LUNG	1	1	0.073	FALSE	369	2501	205	193	0	FALSE	ACH-000395
NCIH520_LUNG	MT-TA--MT-TC	7	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0638	0.0182	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH520_LUNG	1	1	0.082	FALSE	462	80	0	856	0	FALSE	ACH-000395
NCIH520_LUNG	PCAT1--RP11-382A18.2	7	1	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0638	0.0091	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	NCIH520_LUNG	0.89	1	0.0729	TRUE	4	84	1	46	0	FALSE	ACH-000395
NCIH520_LUNG	PLCB4--PLCB1	7	0	PLCB4	8912	chr20:9319684:+	PLCB1	86832	chr20:8862269:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0638	0	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	NCIH520_LUNG	1	1	0.0638	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	REV3L--RPL28	7	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0638	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH520_LUNG	1	1	0.0638	TRUE	22	156	2	142	0	FALSE	ACH-000395
NCIH520_LUNG	MACF1--WNT9A	6	3	MACF1	11842	chr1:39715775:+	WNT9A	126349	chr1:228113220:-	ONLY_REF_SPLICE	YES	40	1	0.18	0.9	0.0547	0.0274	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,WNT9A->Wnt_family_member_9A,chr1:228106357-228135599:-	NCIH520_LUNG	0.18	0.9	0.0821	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	C15orf57--CBX3	5	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	30	26	0.27	0.3	0.0456	0.0547	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH520_LUNG	0.27	0.3	0.1003	TRUE	267	562	48	632	0	FALSE	ACH-000395
NCIH520_LUNG	MT-TA--MT-TN	6	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0547	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH520_LUNG	1	1	0.0547	FALSE	369	2501	205	193	0	FALSE	ACH-000395
NCIH520_LUNG	PAK1--TENM4	2	16	PAK1	2227	chr11:77184454:-	TENM4	49607	chr11:78614568:-	ONLY_REF_SPLICE	NO	119	0	0.13	1	0.0182	0.1459	PAK1->Oncogene{Bushman},chr11:77032752-77185680:-,p21_(RAC1)_activated_kinase_1,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	NCIH520_LUNG	0.13	1	0.1641	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	ZNF252P--ATAD2	5	4	ZNF252P	1111	chr8:146228171:-	ATAD2	37596	chr8:124351686:-	INCL_NON_REF_SPLICE	YES	2	149	0.82	0.06	0.0456	0.0365	ZNF252P->chr8:146198975-146228281:-,zinc_finger_protein_252,_pseudogene,ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-	NCIH520_LUNG	0.06	0.82	0.0821	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	MT-CO3--MT-ATP6	4	7	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.92	0.0365	0.0638	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH520_LUNG	0.92	1	0.1003	FALSE	189	492	56	216	0	FALSE	ACH-000395
NCIH520_LUNG	NRXN3--ACAA2	5	2	NRXN3	24693	chr14:79454484:+	ACAA2	51138	chr18:47329223:-	ONLY_REF_SPLICE	YES	36	118	0.16	0.06	0.0456	0.0182	NRXN3->chr14:78708734-80330762:+,neurexin_3,ACAA2->acetyl-CoA_acyltransferase_2,chr18:47309869-47340330:-	NCIH520_LUNG	0.06	0.16	0.0638	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	JSRP1--RPS28	5	1	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0.0091	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH520_LUNG	1	1	0.0547	TRUE	0	1	0	84	1	FALSE	ACH-000395
NCIH520_LUNG	NUTM2A-AS1--SFTPA1	5	1	NUTM2A-AS1	14159	chr10:89048199:-	SFTPA1	26206	chr10:81371559:+	ONLY_REF_SPLICE	YES	35	0	0.15	1	0.0456	0.0091	NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,SFTPA1->chr10:81370695-81375196:+,surfactant_protein_A1	NCIH520_LUNG	0.15	1	0.0547	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	CHD8--HNRNPC	5	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0456	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	NCIH520_LUNG	1	1	0.0456	TRUE	2	8	0	24	0	FALSE	ACH-000395
NCIH520_LUNG	MT-CO3--MT-ATP6	5	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH520_LUNG	1	1	0.0456	FALSE	189	492	56	216	0	FALSE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	4	3	NKD1	2226	chr16:50583466:+	ADCY7	21506	chr16:50321823:+	ONLY_REF_SPLICE	YES	1995	0	0	1	0.0365	0.0274	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0	1	0.0639	FALSE	0	1	0	4	1	FALSE	ACH-000395
NCIH520_LUNG	EIF1--RPS28	4	2	EIF1	1121	chr17:39845257:+	RPS28	8168	chr19:8386425:+	INCL_NON_REF_SPLICE	YES	714	0	0.01	1	0.0365	0.0182	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH520_LUNG	0.01	1	0.0547	FALSE	0	0	0	81	0	FALSE	ACH-000395
NCIH520_LUNG	JSRP1--RPS28	4	1	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0.0091	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH520_LUNG	1	1	0.0456	TRUE	0	1	0	84	1	FALSE	ACH-000395
NCIH520_LUNG	KNTC1--RP11-392O17.1	4	1	KNTC1	36690	chr12:123076000:+	RP11-392O17.1	64049	chr1:219583609:-	ONLY_REF_SPLICE	YES	40	897	0.11	0.01	0.0365	0.0091	KNTC1->chr12:123011793-123110943:+,kinetochore_associated_1,RP11-392O17.1->chr1:219583023-219585283:-	NCIH520_LUNG	0.01	0.11	0.0456	FALSE	0	0	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	MT-CO3--MT-ATP6	4	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0365	0.0091	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH520_LUNG	0.62	1	0.0456	FALSE	189	492	56	216	0	FALSE	ACH-000395
NCIH520_LUNG	RP11-499O7.7--AKR1C1	4	1	RP11-499O7.7	1659	chr10:5038338:+	AKR1C1	13523	chr10:5008106:+	ONLY_REF_SPLICE	YES	0	659	1	0.01	0.0365	0.0091	LOCAL_REARRANGEMENT:+:[12205],RP11-499O7.7->chr10:5037680-5039572:+,AKR1C1->aldo-keto_reductase_family_1,_member_C1,chr10:4934796-5025475:+	NCIH520_LUNG	0.01	1	0.0456	FALSE	0	0	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0365	0.0091	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH520_LUNG	1	1	0.0456	FALSE	515	4851	409	746	0	FALSE	ACH-000395
NCIH520_LUNG	AMFR--RP11-327F22.4	4	0	AMFR	9965	chr16:56435645:-	RP11-327F22.4	25321	chr16:50818100:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0365	0	AMFR->Oncogene{Bushman},autocrine_motility_factor_receptor,chr16:56395364-56459450:-,RP11-327F22.4->chr16:50817770-50837249:-	NCIH520_LUNG	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	DPYSL3--JAKMIP2	4	0	DPYSL3	8449	chr5:146795272:-	JAKMIP2	48977	chr5:146971249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0365	0	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[78371],DPYSL3->chr5:146770374-146889619:-,dihydropyrimidinase_like_3,JAKMIP2->chr5:146967990-147162338:-,janus_kinase_and_microtubule_interacting_protein_2	NCIH520_LUNG	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	MATR3--CTNNA1	4	0	MATR3	9772	chr5:138629494:+	CTNNA1	45982	chr5:138145727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0365	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	NCIH520_LUNG	1	1	0.0365	TRUE	3	14	0	14	0	FALSE	ACH-000395
NCIH520_LUNG	MT-TA--MT-TN	4	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH520_LUNG	1	1	0.0365	FALSE	369	2501	205	193	0	FALSE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	3	4	NKD1	5460	chr16:50655619:+	ADCY7	21506	chr16:50321823:+	ONLY_REF_SPLICE	YES	1870	0	0	1	0.0274	0.0365	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0	1	0.0639	FALSE	0	0	0	2	0	FALSE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	3	4	NKD1	9669	chr16:50666319:+	ADCY7	32369	chr16:50338271:+	ONLY_REF_SPLICE	YES	1735	157	0	0.04	0.0274	0.0365	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0	0.04	0.0639	FALSE	0	0	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	NKD1--CNEP1R1	4	0	NKD1	2226	chr16:50583466:+	CNEP1R1	18984	chr16:50060307:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0365	0	NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,CNEP1R1->CTD_nuclear_envelope_phosphatase_1_regulatory_subunit_1,chr16:50058321-50070999:+	NCIH520_LUNG	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	RCC1--FAM192A	4	0	RCC1	2175	chr1:28834672:+	FAM192A	24869	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0365	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	NCIH520_LUNG	1	1	0.0365	TRUE	0	3	0	3	0	TRUE	ACH-000395
NCIH520_LUNG	RERE--MT-ND4	4	0	RERE	34132	chr1:8416251:-	MT-ND4	41393	chrM:11226:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH520_LUNG	1	1	0.0365	FALSE	1	0	0	5	0	FALSE	ACH-000395
NCIH520_LUNG	RP11-123O10.4--GRIP1	4	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0365	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH520_LUNG	1	1	0.0365	FALSE	416	2512	207	587	0	FALSE	ACH-000395
NCIH520_LUNG	EIF1--RPS28	3	3	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	121	0	0.05	1	0.0274	0.0274	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH520_LUNG	0.05	1	0.0548	TRUE	0	0	0	81	0	FALSE	ACH-000395
NCIH520_LUNG	MT-CO3--MT-ATP6	3	2	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.0274	0.0182	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH520_LUNG	0.71	1	0.0456	FALSE	189	492	56	216	0	FALSE	ACH-000395
NCIH520_LUNG	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	25	0.5	0.14	0.0274	0.0091	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH520_LUNG	0.14	0.5	0.0365	FALSE	16	356	14	466	0	FALSE	ACH-000395
NCIH520_LUNG	DPYSL3--JAKMIP2	3	0	DPYSL3	5010	chr5:146833112:-	JAKMIP2	48977	chr5:146971249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[78371],DPYSL3->chr5:146770374-146889619:-,dihydropyrimidinase_like_3,JAKMIP2->chr5:146967990-147162338:-,janus_kinase_and_microtubule_interacting_protein_2	NCIH520_LUNG	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	EIF1--MT-CO1	3	0	EIF1	1085	chr17:39845221:+	MT-CO1	8311	chrM:6430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH520_LUNG	1	1	0.0274	FALSE	0	0	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	FARS2--CDYL	3	0	FARS2	1617	chr6:5261893:+	CDYL	23182	chr6:4891947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,CDYL->chr6:4706393-4955785:+,chromodomain_protein,_Y-like	NCIH520_LUNG	1	1	0.0274	TRUE	0	1	0	2	1	TRUE	ACH-000395
NCIH520_LUNG	LASP1--MT-ND4L	3	0	LASP1	12948	chr17:37075343:+	MT-ND4L	18644	chrM:10485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH520_LUNG	1	1	0.0274	FALSE	0	0	0	7	0	FALSE	ACH-000395
NCIH520_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH520_LUNG	1	1	0.0274	FALSE	189	492	56	216	0	FALSE	ACH-000395
NCIH520_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1063	chrM:9269:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH520_LUNG	1	1	0.0274	FALSE	189	492	56	216	0	FALSE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	3	0	NKD1	2226	chr16:50583466:+	ADCY7	44160	chr16:50350441:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NPM1P24--SET	3	0	NPM1P24	1535	chr10:74677758:-	SET	7622	chr9:131451517:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH520_LUNG	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NRXN3--SET	3	0	NRXN3	24693	chr14:79454484:+	SET	52425	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},NRXN3->chr14:78708734-80330762:+,neurexin_3,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH520_LUNG	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	2	2	NKD1	3293	chr16:50642271:+	ADCY7	30119	chr16:50334626:+	ONLY_REF_SPLICE	YES	2023	11	0	0.27	0.0182	0.0182	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0	0.27	0.0364	FALSE	0	0	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	2	2	NKD1	2226	chr16:50583466:+	ADCY7	28991	chr16:50332815:+	ONLY_REF_SPLICE	YES	1995	8	0	0.33	0.0182	0.0182	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0	0.33	0.0364	FALSE	0	0	0	2	0	FALSE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	2	2	NKD1	2226	chr16:50583466:+	ADCY7	32369	chr16:50338271:+	ONLY_REF_SPLICE	YES	1995	157	0	0.02	0.0182	0.0182	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0	0.02	0.0364	FALSE	0	0	0	2	0	FALSE	ACH-000395
NCIH520_LUNG	NKD1--HEATR3	2	2	NKD1	3293	chr16:50642271:+	HEATR3	22527	chr16:50109482:+	ONLY_REF_SPLICE	YES	2023	44	0	0.08	0.0182	0.0182	NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,HEATR3->HEAT_repeat_containing_3,chr16:50099852-50140298:+	NCIH520_LUNG	0	0.08	0.0364	FALSE	0	0	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	RP11-114H23.1--RP11-114H23.2	2	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0.0182	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH520_LUNG	1	1	0.0364	FALSE	81	155	12	160	0	FALSE	ACH-000395
NCIH520_LUNG	RP11-6N13.1--CTD-2374C24.1	2	1	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0182	0.0091	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH520_LUNG	0.75	1	0.0273	TRUE	5	12	0	42	0	FALSE	ACH-000395
NCIH520_LUNG	SHISA9--U91319.1	2	1	SHISA9	7683	chr16:13010672:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	67	0	0.04	1	0.0182	0.0091	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	NCIH520_LUNG	0.04	1	0.0273	FALSE	2	8	0	8	0	FALSE	ACH-000395
NCIH520_LUNG	TSPAN5--METAP1	2	1	TSPAN5	1484	chr4:99579297:-	METAP1	24467	chr4:99950018:+	ONLY_REF_SPLICE	YES	122	282	0.02	0.01	0.0182	0.0091	{Klijn_CCL:Breast=1,Colo-Rectal=1},TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1	NCIH520_LUNG	0.01	0.02	0.0273	FALSE	0	4	0	3	1	FALSE	ACH-000395
NCIH520_LUNG	DANCR--ACAA2	2	0	DANCR	1530	chr4:53579126:+	ACAA2	10666	chr18:47329223:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ACAA2->acetyl-CoA_acyltransferase_2,chr18:47309869-47340330:-	NCIH520_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	30054	chr13:114201615:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	NCIH520_LUNG	1	1	0.0182	TRUE	0	3	0	3	3	TRUE	ACH-000395
NCIH520_LUNG	DPYSL3--JAKMIP2	2	0	DPYSL3	1579	chr5:146889041:-	JAKMIP2	48977	chr5:146971249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[78371],DPYSL3->chr5:146770374-146889619:-,dihydropyrimidinase_like_3,JAKMIP2->chr5:146967990-147162338:-,janus_kinase_and_microtubule_interacting_protein_2	NCIH520_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	KANSL1--ARL17B	1	4	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	34	135	0.13	0.04	0.0091	0.0365	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH520_LUNG	0.04	0.13	0.0456	TRUE	105	90	7	93	0	FALSE	ACH-000395
NCIH520_LUNG	MATR3--CTNNA1	2	0	MATR3	9772	chr5:138629494:+	CTNNA1	57245	chr5:138221901:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	NCIH520_LUNG	1	1	0.0182	TRUE	2	3	0	5	0	FALSE	ACH-000395
NCIH520_LUNG	MGA--AC159540.1	2	0	MGA	13640	chr15:42005694:+	AC159540.1	46366	chr2:98089511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	MGA->MGA,_MAX_dimerization_protein,chr15:41913422-42062141:+,AC159540.1->chr2:98081083-98099107:-	NCIH520_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NCK1--MLLT4-AS1	2	0	NCK1	4708	chr3:136647069:+	MLLT4-AS1	16264	chr6:168225486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,MLLT4-AS1->MLLT4_antisense_RNA_1_(head_to_head),chr6:168224556-168227389:-	NCIH520_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH520_LUNG	1	1	0.0182	TRUE	145	312	16	51	0	FALSE	ACH-000395
NCIH520_LUNG	R3HDM1--UBXN4	2	0	R3HDM1	1179	chr2:136289203:+	UBXN4	40026	chr2:136505837:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[16349],R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+,UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+	NCIH520_LUNG	1	1	0.0182	FALSE	0	0	0	4	0	FALSE	ACH-000395
NCIH520_LUNG	RP11-120D5.1--MID1	2	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH520_LUNG	1	1	0.0182	FALSE	0	48	1	163	0	FALSE	ACH-000395
NCIH520_LUNG	SDF2--C5orf28	2	0	SDF2	1464	chr17:26988744:-	C5orf28	15958	chr5:43454145:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	SDF2->chr17:26975374-26989207:-,stromal_cell_derived_factor_2,C5orf28->chr5:43444354-43483995:-,chromosome_5_open_reading_frame_28	NCIH520_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	TIMM23--RP11-464F9.1	2	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	30164	chr10:75439864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH520_LUNG	1	1	0.0182	TRUE	0	0	0	3	0	FALSE	ACH-000395
NCIH520_LUNG	TSPAN5--RAP1GDS1	2	0	TSPAN5	2090	chr4:99578691:-	RAP1GDS1	31645	chr4:99325628:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=4;pct=0.05%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Hippocampus=1,Thyroid=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[26506],TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+	NCIH520_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	TSPAN5--RAP1GDS1	2	0	TSPAN5	5664	chr4:99428829:-	RAP1GDS1	37926	chr4:99355087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=4;pct=0.05%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Hippocampus=1,Thyroid=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[26506],TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+	NCIH520_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	WBP1L--EIF4EBP2	2	0	WBP1L	1174	chr10:104503900:+	EIF4EBP2	13447	chr10:72179670:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+,EIF4EBP2->chr10:72164135-72188374:+,eukaryotic_translation_initiation_factor_4E_binding_protein_2	NCIH520_LUNG	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	CD44--PDHX	1	3	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	1070	137	0	0.03	0.0091	0.0274	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	NCIH520_LUNG	0	0.03	0.0365	FALSE	0	20	0	35	2	FALSE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	1	3	NKD1	3293	chr16:50642271:+	ADCY7	21506	chr16:50321823:+	ONLY_REF_SPLICE	NO	2023	0	0	1	0.0091	0.0274	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0	1	0.0365	FALSE	0	0	0	2	0	FALSE	ACH-000395
NCIH520_LUNG	NKD1--ADCY7	1	3	NKD1	5460	chr16:50655619:+	ADCY7	28991	chr16:50332815:+	ONLY_REF_SPLICE	NO	1870	8	0	0.33	0.0091	0.0274	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	NCIH520_LUNG	0	0.33	0.0365	FALSE	0	0	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	KMT2E--LETM2	1	2	KMT2E	14975	chr7:104719410:+	LETM2	42440	chr8:38260043:+	ONLY_REF_SPLICE	YES	17	1	0.15	0.75	0.0091	0.0182	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,LETM2->chr8:38243725-38267045:+,leucine_zipper_and_EF-hand_containing_transmembrane_protein_2	NCIH520_LUNG	0.15	0.75	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	METAP1--TSPAN5	1	2	METAP1	1248	chr4:99917018:+	TSPAN5	27602	chr4:99428879:-	ONLY_REF_SPLICE	NO	252	157	0.01	0.02	0.0091	0.0182	METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1,TSPAN5->chr4:99391518-99579780:-,tetraspanin_5	NCIH520_LUNG	0.01	0.02	0.0273	FALSE	0	0	0	2	0	FALSE	ACH-000395
NCIH520_LUNG	RP11-6N13.1--CTD-2374C24.1	1	2	RP11-6N13.1	6832	chr5:104082242:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	NO	0	1	1	0.75	0.0091	0.0182	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH520_LUNG	0.75	1	0.0273	TRUE	0	1	0	2	0	FALSE	ACH-000395
NCIH520_LUNG	SHISA9--U91319.1	1	2	SHISA9	9974	chr16:13297406:+	U91319.1	24024	chr16:13568067:+	ONLY_REF_SPLICE	YES	57	9	0.05	0.25	0.0091	0.0182	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	NCIH520_LUNG	0.05	0.25	0.0273	FALSE	1	17	0	8	0	FALSE	ACH-000395
NCIH520_LUNG	CTD-2023M8.1--BASP1	1	1	CTD-2023M8.1	1176	chr5:18746107:-	BASP1	9745	chr5:17275317:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0091	0.0091	CTD-2023M8.1->chr5:18704542-18746282:-,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	NCIH520_LUNG	0.67	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	DANCR--SNTB1	1	1	DANCR	1530	chr4:53579126:+	SNTB1	12667	chr8:121644891:-	ONLY_REF_SPLICE	YES	769	360	0	0.01	0.0091	0.0091	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH520_LUNG	0	0.01	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	DTNB--NECAP2	1	1	DTNB	14527	chr2:25799707:-	NECAP2	47022	chr1:16782313:+	ONLY_REF_SPLICE	YES	34	109	0.06	0.02	0.0091	0.0091	DTNB->chr2:25600067-25896503:-,dystrobrevin_beta,NECAP2->NECAP_endocytosis_associated_2,chr1:16767167-16786573:+	NCIH520_LUNG	0.02	0.06	0.0182	TRUE	0	0	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	KMT2E--LETM2	1	1	KMT2E	13482	chr7:104717880:+	LETM2	42440	chr8:38260043:+	ONLY_REF_SPLICE	YES	32	1	0.06	0.67	0.0091	0.0091	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,LETM2->chr8:38243725-38267045:+,leucine_zipper_and_EF-hand_containing_transmembrane_protein_2	NCIH520_LUNG	0.06	0.67	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000395
NCIH520_LUNG	METAP1--TSPAN5	1	1	METAP1	1248	chr4:99917018:+	TSPAN5	28653	chr4:99408035:-	ONLY_REF_SPLICE	YES	252	279	0.01	0.01	0.0091	0.0091	METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1,TSPAN5->chr4:99391518-99579780:-,tetraspanin_5	NCIH520_LUNG	0.01	0.01	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	NKD1--HEATR3	1	1	NKD1	5460	chr16:50655619:+	HEATR3	29029	chr16:50128616:+	ONLY_REF_SPLICE	NO	1869	26	0	0.07	0.0091	0.0091	NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,HEATR3->HEAT_repeat_containing_3,chr16:50099852-50140298:+	NCIH520_LUNG	0	0.07	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	NKD1--HEATR3	1	1	NKD1	2226	chr16:50583466:+	HEATR3	27892	chr16:50120126:+	ONLY_REF_SPLICE	YES	1995	39	0	0.05	0.0091	0.0091	NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,HEATR3->HEAT_repeat_containing_3,chr16:50099852-50140298:+	NCIH520_LUNG	0	0.05	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	PHF20--CPNE1	1	1	PHF20	4583	chr20:34389527:+	CPNE1	39877	chr20:34220845:-	ONLY_REF_SPLICE	YES	73	207	0.03	0.01	0.0091	0.0091	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,CPNE1->chr20:34213953-34252878:-,copine_1	NCIH520_LUNG	0.01	0.03	0.0182	FALSE	0	1	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	RP11-6N13.1--CTD-2374C24.1	1	1	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	NO	1	1	0.67	0.67	0.0091	0.0091	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH520_LUNG	0.67	0.67	0.0182	TRUE	1	1	0	17	1	FALSE	ACH-000395
NCIH520_LUNG	SHISA9--U91319.1	1	1	SHISA9	7683	chr16:13010672:+	U91319.1	24024	chr16:13568067:+	ONLY_REF_SPLICE	NO	67	9	0.03	0.18	0.0091	0.0091	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	NCIH520_LUNG	0.03	0.18	0.0182	FALSE	0	1	0	6	0	FALSE	ACH-000395
NCIH520_LUNG	SPC24--SMARCA4	1	1	SPC24	1192	chr19:11266293:-	SMARCA4	16934	chr19:11094797:+	ONLY_REF_SPLICE	YES	155	63	0.01	0.03	0.0091	0.0091	LOCAL_INVERSION:-:+:[66125],SPC24->SPC24,_NDC80_kinetochore_complex_component,chr19:11242196-11266484:-,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	NCIH520_LUNG	0.01	0.03	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	THSD4--LRRC49	1	1	THSD4	8286	chr15:71704162:+	LRRC49	62927	chr15:71305143:+	ONLY_REF_SPLICE	YES	61	40	0.03	0.05	0.0091	0.0091	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:6],{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[46877],THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4,LRRC49->chr15:71145578-71342414:+,leucine_rich_repeat_containing_49	NCIH520_LUNG	0.03	0.05	0.0182	TRUE	0	0	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	TSPAN5--METAP1	1	1	TSPAN5	2105	chr4:99578676:-	METAP1	21400	chr4:99926920:+	ONLY_REF_SPLICE	NO	183	310	0.01	0.01	0.0091	0.0091	{Klijn_CCL:Breast=1,Colo-Rectal=1},TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1	NCIH520_LUNG	0.01	0.01	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	TSPAN5--METAP1	1	1	TSPAN5	2090	chr4:99578691:-	METAP1	24467	chr4:99950018:+	ONLY_REF_SPLICE	YES	167	282	0.01	0.01	0.0091	0.0091	{Klijn_CCL:Breast=1,Colo-Rectal=1},TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1	NCIH520_LUNG	0.01	0.01	0.0182	FALSE	0	4	0	3	1	FALSE	ACH-000395
NCIH520_LUNG	TSPAN5--RAP1GDS1	1	1	TSPAN5	1484	chr4:99579297:-	RAP1GDS1	23522	chr4:99264290:+	ONLY_REF_SPLICE	NO	122	99	0.02	0.02	0.0091	0.0091	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=4;pct=0.05%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Hippocampus=1,Thyroid=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[26506],TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+	NCIH520_LUNG	0.02	0.02	0.0182	TRUE	0	0	0	2	0	FALSE	ACH-000395
NCIH520_LUNG	TSPAN5--RAP1GDS1	1	1	TSPAN5	1484	chr4:99579297:-	RAP1GDS1	21341	chr4:99214559:+	ONLY_REF_SPLICE	NO	122	78	0.02	0.03	0.0091	0.0091	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=4;pct=0.05%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Hippocampus=1,Thyroid=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[26506],TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+	NCIH520_LUNG	0.02	0.03	0.0182	TRUE	1	0	0	1	0	FALSE	ACH-000395
NCIH520_LUNG	TYMS--DOCK1	1	1	TYMS	4286	chr18:662320:+	DOCK1	14346	chr10:128768966:+	ONLY_REF_SPLICE	YES	162	9	0.01	0.18	0.0091	0.0091	TYMS->chr18:657604-673578:+,thymidylate_synthetase,DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1	NCIH520_LUNG	0.01	0.18	0.0182	FALSE	0	2	0	2	0	FALSE	ACH-000395
LN382_CENTRAL_NERVOUS_SYSTEM	CLTC--VMP1	245	227	CLTC	4540	chr17:57725762:+	VMP1	53132	chr17:57915656:+	ONLY_REF_SPLICE	YES	354	503	0.57	0.48	2.9269	2.7118	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	LN382_CENTRAL_NERVOUS_SYSTEM	0.48	0.57	5.6387	FALSE	0	0	0	2	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ACSL3--ALAS1	134	147	ACSL3	1325	chr2:223725976:+	ALAS1	28305	chr3:52233226:+	ONLY_REF_SPLICE	YES	314	185	0.47	0.6	1.6008	1.7561	ACSL3->Oncogene{Bushman},acyl-CoA_synthetase_long-chain_family_member_3,chr2:223725652-223809357:+,ALAS1->5'-aminolevulinate_synthase_1,chr3:52232102-52248343:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.47	0.6	3.3569	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	116	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3858	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	1.3858	TRUE	402	216	10	229	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	RIT1--ARHGEF2	90	57	RIT1	3804	chr1:155874102:-	ARHGEF2	18479	chr1:155955240:-	ONLY_REF_SPLICE	YES	140	8	0.51	0.95	1.0752	0.6809	LOCAL_REARRANGEMENT:-:[35435],RIT1->Ras-like_without_CAAX_1,chr1:155867599-155881195:-,ARHGEF2->Oncogene{Bushman},Rho/Rac_guanine_nucleotide_exchange_factor_2,chr1:155916630-155976861:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.51	0.95	1.7561	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	CLTC--VMP1	6	227	CLTC	4540	chr17:57725762:+	VMP1	51426	chr17:57911373:+	ONLY_REF_SPLICE	YES	354	231	0.4	0.5	0.0717	2.7118	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	LN382_CENTRAL_NERVOUS_SYSTEM	0.4	0.5	2.7835	FALSE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	55	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6571	0.2987	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.9558	TRUE	508	994	45	981	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ACSL3--ALAS1	25	137	ACSL3	1325	chr2:223725976:+	ALAS1	28316	chr3:52233237:+	ONLY_REF_SPLICE	YES	314	175	0.34	0.48	0.2987	1.6367	ACSL3->Oncogene{Bushman},acyl-CoA_synthetase_long-chain_family_member_3,chr2:223725652-223809357:+,ALAS1->5'-aminolevulinate_synthase_1,chr3:52232102-52248343:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.34	0.48	1.9354	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-CO1	58	1	MT-ND4	1359	chrM:11118:+	MT-CO1	6032	chrM:6557:+	INCL_NON_REF_SPLICE	YES	19996	26479	0	0	0.6929	0.0119	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN382_CENTRAL_NERVOUS_SYSTEM	0	0	0.7048	FALSE	19	92	11	16	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	CLTC--VMP1	1	227	CLTC	4540	chr17:57725762:+	VMP1	50364	chr17:57895073:+	ONLY_REF_SPLICE	YES	354	203	0.39	0.53	0.0119	2.7118	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	LN382_CENTRAL_NERVOUS_SYSTEM	0.39	0.53	2.7237	FALSE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	KIAA0319L--PYCR2	43	58	KIAA0319L	4118	chr1:36019951:-	PYCR2	34356	chr1:226111471:-	ONLY_REF_SPLICE	YES	97	385	0.51	0.21	0.5137	0.6929	KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,PYCR2->chr1:226107578-226111978:-,pyrroline-5-carboxylate_reductase_family_member_2	LN382_CENTRAL_NERVOUS_SYSTEM	0.21	0.51	1.2066	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	CLTC--VMP1	1	176	CLTC	4540	chr17:57725762:+	VMP1	53149	chr17:57915673:+	ONLY_REF_SPLICE	NO	354	504	0.33	0.26	0.0119	2.1026	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	LN382_CENTRAL_NERVOUS_SYSTEM	0.26	0.33	2.1145	FALSE	0	0	0	2	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	38	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	275	6	0.13	0.87	0.454	0.0239	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.13	0.87	0.4779	TRUE	519	3926	326	965	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	33	17	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	49	61	0.51	0.45	0.3942	0.2031	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.45	0.51	0.5973	TRUE	181	1564	124	196	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	34	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4062	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.4062	TRUE	7	10	0	216	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	27	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3226	0.0597	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.3823	FALSE	462	80	0	856	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	20	24	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	110	43	0.29	0.51	0.2389	0.2867	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LN382_CENTRAL_NERVOUS_SYSTEM	0.29	0.51	0.5256	TRUE	267	562	48	632	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	23	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	19	1	0.61	0.2748	0.0836	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.61	1	0.3584	TRUE	465	1949	224	605	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	23	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2748	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.2748	TRUE	0	0	0	518	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	19	11	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.227	0.1314	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.3584	TRUE	477	1352	189	275	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	KIAA0319L--PYCR2	12	37	KIAA0319L	4118	chr1:36019951:-	PYCR2	35744	chr1:226110083:-	ONLY_REF_SPLICE	YES	97	440	0.34	0.1	0.1434	0.442	KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,PYCR2->chr1:226107578-226111978:-,pyrroline-5-carboxylate_reductase_family_member_2	LN382_CENTRAL_NERVOUS_SYSTEM	0.1	0.34	0.5854	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	21	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	12956	8	0	0.73	0.2509	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.73	0.2628	FALSE	230	193	14	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	16	19	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	107	43	0.25	0.45	0.1911	0.227	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LN382_CENTRAL_NERVOUS_SYSTEM	0.25	0.45	0.4181	TRUE	267	562	48	632	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	16	13	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.94	0.1911	0.1553	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.3464	TRUE	458	1351	185	561	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	18	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15483	12	0	0.64	0.215	0.0358	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.64	0.2508	FALSE	231	205	14	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	WDFY3--MAPK10	14	19	WDFY3	3377	chr4:85818064:-	MAPK10	116971	chr4:86952584:-	ONLY_REF_SPLICE	YES	7	10	0.82	0.77	0.1673	0.227	WDFY3->WD_repeat_and_FYVE_domain_containing_3,chr4:85590704-85887544:-,MAPK10->Oncogene{Bushman},chr4:86936276-87515284:-,mitogen-activated_protein_kinase_10	LN382_CENTRAL_NERVOUS_SYSTEM	0.77	0.82	0.3943	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	SF3B1--COL1A2	17	1	SF3B1	11321	chr2:198270103:-	COL1A2	48672	chr7:94049941:+	INCL_NON_REF_SPLICE	NO	344	6731	0.05	0	0.2031	0.0119	SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.05	0.215	FALSE	0	0	0	3	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	15	8	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	238	0	0.09	1	0.1792	0.0956	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.09	1	0.2748	FALSE	56	216	12	147	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	COPB2--SLC37A3	13	15	COPB2	9085	chr3:139096883:-	SLC37A3	33029	chr7:140082396:-	ONLY_REF_SPLICE	YES	478	25	0.06	0.53	0.1553	0.1792	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,SLC37A3->chr7:139993493-140104233:-,solute_carrier_family_37_member_3	LN382_CENTRAL_NERVOUS_SYSTEM	0.06	0.53	0.3345	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	11	20	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	80	0	0.28	1	0.1314	0.2389	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.28	1	0.3703	FALSE	21	45	1	60	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	15	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13042	12	0	0.57	0.1792	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.57	0.1911	FALSE	230	198	14	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	6	34	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	17362	0	0	1	0.0717	0.4062	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.4779	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	CALM3--MT-ND4L	12	7	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1341	0	0.01	1	0.1434	0.0836	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN382_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.227	FALSE	1	1	0	107	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL7A1	12	6	COL1A1	13029	chr17:48266746:-	COL7A1	34750	chr3:48620076:-	INCL_NON_REF_SPLICE	NO	5141	287	0	0.06	0.1434	0.0717	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.06	0.2151	FALSE	0	1	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ACSL3--ALAS1	3	41	ACSL3	1325	chr2:223725976:+	ALAS1	29536	chr3:52236523:+	ONLY_REF_SPLICE	YES	314	356	0.12	0.11	0.0358	0.4898	ACSL3->Oncogene{Bushman},acyl-CoA_synthetase_long-chain_family_member_3,chr2:223725652-223809357:+,ALAS1->5'-aminolevulinate_synthase_1,chr3:52232102-52248343:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.11	0.12	0.5256	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	7	19	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17005	69	0	0.27	0.0836	0.227	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.27	0.3106	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	31	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2673	69	0.01	0.34	0.0478	0.3703	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0.01	0.34	0.4181	FALSE	216	209	16	281	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	27	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	15374	207	0	0.13	0.0597	0.3226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.13	0.3823	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	33	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	16335	0	0	1	0.0358	0.3942	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.43	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	33	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	17521	0	0	1	0.0358	0.3942	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.43	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	STARD3--CDK12	11	1	STARD3	1167	chr17:37793484:+	CDK12	38860	chr17:37700502:+	ONLY_REF_SPLICE	YES	18	21	0.4	0.36	0.1314	0.0119	LOCAL_REARRANGEMENT:+:[72158],STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	LN382_CENTRAL_NERVOUS_SYSTEM	0.36	0.4	0.1433	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	11	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1314	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.1314	FALSE	183	104	9	328	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	28	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14828	69	0	0.32	0.0478	0.3345	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.32	0.3823	FALSE	231	215	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	10	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10411	26093	0	0	0.1195	0.0239	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN382_CENTRAL_NERVOUS_SYSTEM	0	0	0.1434	FALSE	183	104	9	328	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	25	MT-ND4	2098	chrM:11857:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	12072	519	0	0.05	0.0478	0.2987	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.05	0.3465	FALSE	231	215	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	19	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	17064	0	0	1	0.0597	0.227	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.2867	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-CO1	8	7	MT-ND4	1773	chrM:11532:+	MT-CO1	5916	chrM:6441:+	INCL_NON_REF_SPLICE	YES	17518	23215	0	0	0.0956	0.0836	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN382_CENTRAL_NERVOUS_SYSTEM	0	0	0.1792	FALSE	19	92	11	16	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	NUBP2--RAB26	9	3	NUBP2	1136	chr16:1833037:+	RAB26	13236	chr16:2199942:+	ONLY_REF_SPLICE	YES	3	3	0.8	0.8	0.1075	0.0358	NUBP2->chr16:1832902-1839192:+,nucleotide_binding_protein_2,RAB26->RAB26,_member_RAS_oncogene_family,chr16:2190804-2204166:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.8	0.8	0.1433	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	SEPT9--RBFOX3	9	3	SEPT9	8751	chr17:75316430:+	RBFOX3	52288	chr17:77303906:-	ONLY_REF_SPLICE	YES	95	0	0.11	1	0.1075	0.0358	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RBFOX3->RNA_binding_protein,_fox-1_homolog_3,chr17:77085427-77613550:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.1433	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL7A1	8	5	COL1A1	13672	chr17:48266103:-	COL7A1	40665	chr3:48613868:-	ONLY_REF_SPLICE	NO	4486	681	0	0.02	0.0956	0.0597	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.1553	TRUE	0	2	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	24	MT-ND4	1828	chrM:11587:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	17005	0	0	1	0.0358	0.2867	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.3225	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	24	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	17546	0	0	1	0.0358	0.2867	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.3225	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	24	MT-ND4	1776	chrM:11535:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	NO	17495	0	0	1	0.0358	0.2867	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.3225	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	KIAA0319L--PYCR2	7	7	KIAA0319L	4118	chr1:36019951:-	PYCR2	36483	chr1:226109344:-	ONLY_REF_SPLICE	YES	97	269	0.13	0.05	0.0836	0.0836	KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,PYCR2->chr1:226107578-226111978:-,pyrroline-5-carboxylate_reductase_family_member_2	LN382_CENTRAL_NERVOUS_SYSTEM	0.05	0.13	0.1672	TRUE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	19	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	17516	12	0	0.66	0.0478	0.227	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.66	0.2748	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	NUBP2--RAB26	8	3	NUBP2	1136	chr16:1833037:+	RAB26	14786	chr16:2201570:+	ONLY_REF_SPLICE	YES	3	18	0.79	0.38	0.0956	0.0358	NUBP2->chr16:1832902-1839192:+,nucleotide_binding_protein_2,RAB26->RAB26,_member_RAS_oncogene_family,chr16:2190804-2204166:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.38	0.79	0.1314	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	14	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18616	0	0	1	0.0597	0.1673	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.227	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	22	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	17435	0	0	1	0.0358	0.2628	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.2986	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	3	22	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	12267	chr5:120116913:+	INCL_NON_REF_SPLICE	YES	80	0	0.24	1	0.0358	0.2628	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.24	1	0.2986	FALSE	1	2	0	4	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	13	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	17005	1967	0	0.01	0.0597	0.1553	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.215	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	16	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	17510	1559	0	0.01	0.0478	0.1911	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.2389	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	12	MT-ND4	1510	chrM:11269:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19598	12	0	0.59	0.0597	0.1434	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.59	0.2031	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	TPCN2--CCND1	7	4	TPCN2	4647	chr11:68825162:+	CCND1	30243	chr11:69465886:+	ONLY_REF_SPLICE	YES	45	379	0.2	0.03	0.0836	0.0478	TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	LN382_CENTRAL_NERVOUS_SYSTEM	0.03	0.2	0.1314	TRUE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	RCN3--CTD-3148I10.9	7	3	RCN3	5534	chr19:50042436:+	CTD-3148I10.9	15797	chr19:49989272:+	INCL_NON_REF_SPLICE	YES	4	1	0.71	0.91	0.0836	0.0358	LOCAL_REARRANGEMENT:+:[41387],RCN3->chr19:50030875-50050219:+,reticulocalbin_3,CTD-3148I10.9->chr19:49966009-49989488:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.71	0.91	0.1194	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	AVPI1--SFRP5	7	2	AVPI1	1558	chr10:99446523:-	SFRP5	9106	chr10:99529502:-	ONLY_REF_SPLICE	YES	70	0	0.11	1	0.0836	0.0239	LOCAL_REARRANGEMENT:-:[79428],AVPI1->Oncogene{Bushman},arginine_vasopressin_induced_1,chr10:99437181-99447080:-,SFRP5->chr10:99526508-99531709:-,secreted_frizzled-related_protein_5	LN382_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.1075	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	NSMCE1--GTF3C1	6	5	NSMCE1	4635	chr16:27268756:-	GTF3C1	22908	chr16:27523222:-	ONLY_REF_SPLICE	YES	261	91	0.04	0.11	0.0717	0.0597	NSMCE1->NSE1_homolog,_SMC5-SMC6_complex_component,chr16:27236312-27280115:-,GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1	LN382_CENTRAL_NERVOUS_SYSTEM	0.04	0.11	0.1314	TRUE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-CO1	7	0	MT-ND4	1245	chrM:11004:+	MT-CO1	6028	chrM:6553:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0836	0	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0836	FALSE	19	89	11	16	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-CO1	4	11	MT-ND4	1795	chrM:11554:+	MT-CO1	5436	chrM:5961:+	INCL_NON_REF_SPLICE	YES	17367	0	0	1	0.0478	0.1314	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.1792	FALSE	19	92	10	16	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	14	MT-ND4	1754	chrM:11513:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	17181	98	0	0.15	0.0358	0.1673	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.15	0.2031	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	14	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	18683	0	0	1	0.0358	0.1673	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.2031	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	RP11-353N4.6--SEC22B	5	6	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	149	800	0.07	0.01	0.0597	0.0717	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.01	0.07	0.1314	TRUE	49	42	7	43	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	WDFY3--MAPK10	1	20	WDFY3	4466	chr4:85800559:-	MAPK10	116971	chr4:86952584:-	ONLY_REF_SPLICE	YES	7	10	0.75	0.68	0.0119	0.2389	WDFY3->WD_repeat_and_FYVE_domain_containing_3,chr4:85590704-85887544:-,MAPK10->Oncogene{Bushman},chr4:86936276-87515284:-,mitogen-activated_protein_kinase_10	LN382_CENTRAL_NERVOUS_SYSTEM	0.68	0.75	0.2508	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ITPK1--BTBD7	5	3	ITPK1	3277	chr14:93542940:-	BTBD7	36198	chr14:93717998:-	ONLY_REF_SPLICE	YES	65	24	0.11	0.25	0.0597	0.0358	ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,BTBD7->BTB_domain_containing_7,chr14:93703896-93799438:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.11	0.25	0.0955	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	11	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19449	69	0	0.17	0.0358	0.1314	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.17	0.1672	FALSE	231	217	16	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ADCY9--NSMCE1	4	5	ADCY9	9269	chr16:4042147:-	NSMCE1	30036	chr16:27268902:-	ONLY_REF_SPLICE	YES	28	15	0.24	0.38	0.0478	0.0597	ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,NSMCE1->NSE1_homolog,_SMC5-SMC6_complex_component,chr16:27236312-27280115:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.24	0.38	0.1075	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	KIAA0319L--PYCR2	4	5	KIAA0319L	4118	chr1:36019951:-	PYCR2	36756	chr1:226109071:-	ONLY_REF_SPLICE	YES	97	299	0.08	0.03	0.0478	0.0597	KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,PYCR2->chr1:226107578-226111978:-,pyrroline-5-carboxylate_reductase_family_member_2	LN382_CENTRAL_NERVOUS_SYSTEM	0.03	0.08	0.1075	TRUE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	5	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10417	25732	0	0	0.0597	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN382_CENTRAL_NERVOUS_SYSTEM	0	0	0.0716	FALSE	183	104	9	328	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	13097	98	0	0.06	0.0597	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.06	0.0716	FALSE	231	204	14	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	13274	0	0	1	0.0597	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.0716	FALSE	231	204	14	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	4	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0478	0.0597	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.1075	FALSE	462	80	0	856	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	RP11-353N4.6--SEC22B	4	5	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	140	800	0.06	0.01	0.0478	0.0597	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.01	0.06	0.1075	TRUE	49	42	7	43	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	SF3B1--COL1A2	5	1	SF3B1	11321	chr2:198270103:-	COL1A2	48681	chr7:94049950:+	INCL_NON_REF_SPLICE	NO	344	6690	0.02	0	0.0597	0.0119	SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0716	FALSE	0	0	0	3	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	WDFY3--MAPK10	4	5	WDFY3	2277	chr4:85853423:-	MAPK10	116971	chr4:86952584:-	ONLY_REF_SPLICE	YES	4	10	0.69	0.47	0.0478	0.0597	WDFY3->WD_repeat_and_FYVE_domain_containing_3,chr4:85590704-85887544:-,MAPK10->Oncogene{Bushman},chr4:86936276-87515284:-,mitogen-activated_protein_kinase_10	LN382_CENTRAL_NERVOUS_SYSTEM	0.47	0.69	0.1075	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	NPLOC4--LARGE	4	4	NPLOC4	4980	chr17:79589192:-	LARGE	64808	chr22:33562818:-	ONLY_REF_SPLICE	YES	257	0	0.03	1	0.0478	0.0478	NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-,LARGE->chr22:33558212-34318829:-,like-glycosyltransferase	LN382_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0956	TRUE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	12	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0.1434	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.1673	TRUE	160	277	29	98	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	3	8	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0.0956	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.1314	TRUE	274	363	69	150	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	CHSY3--HSPA8P4	4	3	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	45	0	0.13	1	0.0478	0.0358	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	LN382_CENTRAL_NERVOUS_SYSTEM	0.13	1	0.0836	FALSE	89	26	1	44	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL7A1	4	3	COL1A1	9774	chr17:48270001:-	COL7A1	35803	chr3:48619023:-	INCL_NON_REF_SPLICE	YES	4369	319	0	0.02	0.0478	0.0358	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0836	FALSE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	2	10	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	238	0	0.05	1	0.0239	0.1195	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.1434	FALSE	1	13	0	24	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	VMP1--CLTC	3	6	VMP1	4329	chr17:57808883:+	CLTC	37920	chr17:57746138:+	ONLY_REF_SPLICE	YES	365	439	0.02	0.02	0.0358	0.0717	{Klijn_CCL:Lung=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[10882],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain	LN382_CENTRAL_NERVOUS_SYSTEM	0.02	0.02	0.1075	TRUE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12956	12	0	0.29	0.0478	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.29	0.0597	FALSE	230	193	14	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ORAI2--PRKRIP1	3	5	ORAI2	5499	chr7:102087490:+	PRKRIP1	24001	chr7:102038067:+	INCL_NON_REF_SPLICE	YES	255	349	0.03	0.02	0.0358	0.0597	LOCAL_REARRANGEMENT:+:[6430],ORAI2->ORAI_calcium_release-activated_calcium_modulator_2,Oncogene{Bushman},chr7:102073553-102097268:+,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.0955	TRUE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ORAI2--PRKRIP1	3	5	ORAI2	6104	chr7:102088095:+	PRKRIP1	24001	chr7:102038067:+	INCL_NON_REF_SPLICE	YES	252	349	0.03	0.02	0.0358	0.0597	LOCAL_REARRANGEMENT:+:[6430],ORAI2->ORAI_calcium_release-activated_calcium_modulator_2,Oncogene{Bushman},chr7:102073553-102097268:+,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.0955	TRUE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	4	1	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	YES	4955	0	0	1	0.0478	0.0119	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.0597	FALSE	0	1	0	48	1	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	4	1	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	1886	0	0	1	0.0478	0.0119	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.0597	FALSE	0	1	0	48	1	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	KIAA0319L--PYCR2	1	12	KIAA0319L	4118	chr1:36019951:-	PYCR2	36048	chr1:226109779:-	ONLY_REF_SPLICE	YES	97	402	0.12	0.03	0.0119	0.1434	KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,PYCR2->chr1:226107578-226111978:-,pyrroline-5-carboxylate_reductase_family_member_2	LN382_CENTRAL_NERVOUS_SYSTEM	0.03	0.12	0.1553	TRUE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	SAMD5--SASH1	4	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0478	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0478	TRUE	53	396	64	110	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	COPB2--SLC37A3	2	7	COPB2	8079	chr3:139097889:-	SLC37A3	33029	chr7:140082396:-	ONLY_REF_SPLICE	YES	544	25	0.02	0.26	0.0239	0.0836	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,SLC37A3->chr7:139993493-140104233:-,solute_carrier_family_37_member_3	LN382_CENTRAL_NERVOUS_SYSTEM	0.02	0.26	0.1075	TRUE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	RIT1--ARHGEF2	1	11	RIT1	1955	chr1:155880241:-	ARHGEF2	18479	chr1:155955240:-	ONLY_REF_SPLICE	NO	258	8	0.04	0.6	0.0119	0.1314	LOCAL_REARRANGEMENT:-:[35435],RIT1->Ras-like_without_CAAX_1,chr1:155867599-155881195:-,ARHGEF2->Oncogene{Bushman},Rho/Rac_guanine_nucleotide_exchange_factor_2,chr1:155916630-155976861:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.04	0.6	0.1433	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL7A1	3	2	COL1A1	14930	chr17:48264845:-	COL7A1	47185	chr3:48607348:-	ONLY_REF_SPLICE	NO	4426	506	0	0.01	0.0358	0.0239	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0597	FALSE	0	0	0	2	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5332	chrM:6554:+	INCL_NON_REF_SPLICE	YES	10411	26339	0	0	0.0358	0.0239	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN382_CENTRAL_NERVOUS_SYSTEM	0	0	0.0597	FALSE	183	104	9	328	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-CO1	3	2	MT-ND4	1459	chrM:11218:+	MT-CO1	5832	chrM:6357:+	INCL_NON_REF_SPLICE	YES	19519	22433	0	0	0.0358	0.0239	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN382_CENTRAL_NERVOUS_SYSTEM	0	0	0.0597	FALSE	19	92	11	16	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	3	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0.0239	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0597	FALSE	462	80	0	856	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	3	2	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	NO	4917	0	0	1	0.0358	0.0239	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.0597	FALSE	0	1	0	48	1	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL7A1	3	1	COL1A1	9774	chr17:48270001:-	COL7A1	46766	chr3:48607767:-	ONLY_REF_SPLICE	NO	4369	541	0	0.01	0.0358	0.0119	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0477	FALSE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	1	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	YES	13167	0	0	1	0.0358	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.0477	FALSE	231	204	14	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13057	69	0	0.05	0.0358	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.05	0.0477	FALSE	230	198	14	283	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	PDHX--CD44	3	1	PDHX	1987	chr11:34938362:+	CD44	37425	chr11:35236399:+	ONLY_REF_SPLICE	YES	220	4821	0.02	0	0.0358	0.0119	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0477	FALSE	0	1	0	9	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	RP11-353N4.6--SEC22B	2	5	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	140	732	0.05	0.01	0.0239	0.0597	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.01	0.05	0.0836	FALSE	33	36	9	21	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	VCL--ZSWIM8	3	1	VCL	4952	chr10:75830841:+	ZSWIM8	44318	chr10:75560775:+	ONLY_REF_SPLICE	YES	342	88	0.01	0.04	0.0358	0.0119	VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ZSWIM8->chr10:75545340-75561551:+,zinc_finger_SWIM-type_containing_8	LN382_CENTRAL_NERVOUS_SYSTEM	0.01	0.04	0.0477	FALSE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	3	1	XXbac-BPG252P9.9	1083	chr6:30691572:-	TUBBP2	4900	chr13:41959193:-	INCL_NON_REF_SPLICE	YES	3992	0	0	1	0.0358	0.0119	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.0477	FALSE	0	1	0	48	1	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	1	8	PRR16	3559	chr5:119816988:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	251	0	0.03	1	0.0119	0.0956	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.1075	FALSE	1	5	0	12	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	1	8	PRR16	5763	chr5:119952887:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	249	0	0.03	1	0.0119	0.0956	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.1075	FALSE	0	3	0	8	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	3	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0358	FALSE	515	4851	409	746	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	SMURF1--SH3BP4	3	0	SMURF1	1379	chr7:98741345:-	SH3BP4	45717	chr2:235963289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	SMURF1->SMAD_specific_E3_ubiquitin_protein_ligase_1,chr7:98625061-98741723:-,SH3BP4->SH3_domain_binding_protein_4,chr2:235860617-235964358:+	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	6	0	0.45	1	0.0239	0.0358	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.45	1	0.0597	FALSE	407	2205	196	549	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	SEPT9--RBFOX3	2	3	SEPT9	6917	chr17:75303279:+	RBFOX3	52288	chr17:77303906:-	ONLY_REF_SPLICE	YES	68	0	0.07	1	0.0239	0.0358	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RBFOX3->RNA_binding_protein,_fox-1_homolog_3,chr17:77085427-77613550:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.0597	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	NUBP2--RAB26	1	6	NUBP2	2166	chr16:1834067:+	RAB26	13236	chr16:2199942:+	ONLY_REF_SPLICE	YES	10	3	0.41	0.7	0.0119	0.0717	NUBP2->chr16:1832902-1839192:+,nucleotide_binding_protein_2,RAB26->RAB26,_member_RAS_oncogene_family,chr16:2190804-2204166:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.41	0.7	0.0836	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	MECR--SYT14	2	1	MECR	7464	chr1:29542517:-	SYT14	27919	chr1:210329066:+	ONLY_REF_SPLICE	YES	92	2	0.03	0.6	0.0239	0.0119	MECR->chr1:29519385-29557454:-,mitochondrial_trans-2-enoyl-CoA_reductase,SYT14->chr1:210111538-210337636:+,synaptotagmin_14	LN382_CENTRAL_NERVOUS_SYSTEM	0.03	0.6	0.0358	TRUE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	OLFML3--RP4-651E10.4	2	1	OLFML3	2177	chr1:114523239:+	RP4-651E10.4	10109	chr1:87037091:-	ONLY_REF_SPLICE	YES	422	0	0.01	1	0.0239	0.0119	OLFML3->chr1:114522063-114524876:+,olfactomedin_like_3,RP4-651E10.4->chr1:87036864-87158886:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0358	FALSE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	PDHX--CD44	2	1	PDHX	12567	chr11:35013926:+	CD44	37425	chr11:35236399:+	ONLY_REF_SPLICE	YES	150	4821	0.02	0	0.0239	0.0119	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0358	FALSE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ZNF736--CHMP1A	2	1	ZNF736	8361	chr7:63797360:+	CHMP1A	24290	chr16:89713739:-	ONLY_REF_SPLICE	YES	15	286	0.17	0.01	0.0239	0.0119	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adipose_Tissue=[count:2=pct:0.7],Breast=[count:2=pct:1.8],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=25;pct=0.29%;dist=Thyroid=4,Cells_-_Transformed_fibroblasts=3,Breast_-_Mammary_Tissue=2,Esophagus_-_Mucosa=2,Ovary=1,Pancreas=1,Lung=1,Vagina=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Colon_-_Sigmoid=1,Testis=1,Colon_-_Transverse=1},ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.01	0.17	0.0358	FALSE	10	14	2	10	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	2	0	CD44	1501	chr11:35160917:+	PDHX	40918	chr11:35006117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	0	2	0	7	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL7A1	2	0	COL1A1	6491	chr17:48273284:-	COL7A1	49337	chr3:48605196:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	0	0	0	2	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	CRIM1--FEZ2	2	0	CRIM1	8239	chr2:36669878:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	1	1	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ENAH--XPNPEP1	2	0	ENAH	15992	chr1:225695653:-	XPNPEP1	52532	chr10:111633185:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila),XPNPEP1->X-prolyl_aminopeptidase_(aminopeptidase_P)_1,_soluble,chr10:111624524-111683311:-	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	FGF2--IL21-AS1	2	0	FGF2	1645	chr4:123748507:+	IL21-AS1	22982	chr4:123609692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	FGF2->Oncogene{Bushman},chr4:123747863-123819391:+,fibroblast_growth_factor_2,IL21-AS1->IL21_antisense_RNA_1,chr4:123540138-123610311:+	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	IKBIP--SLC25A3	2	0	IKBIP	2709	chr12:99028074:-	SLC25A3	14713	chr12:98991634:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	LOCAL_INVERSION:-:+:[11237],IKBIP->IKBKB_interacting_protein,chr12:99007183-99038891:-,SLC25A3->chr12:98987369-98995946:+,solute_carrier_family_25_member_3	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	0	0	0	3	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	KIAA1377--UBAP2L	2	0	KIAA1377	4776	chr11:101818873:+	UBAP2L	44161	chr1:154232424:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	KIAA1377->chr11:101785746-101871789:+,UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	NCOR2--UBC	2	0	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	52	148	13	33	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	FALSE	292	1546	117	613	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	PRRG1--LANCL3	2	0	PRRG1	4586	chrX:37285253:+	LANCL3	17056	chrX:37514941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	PRRG1->chrX:37208528-37316548:+,proline_rich_and_Gla_domain_1,LANCL3->LanC_like_3,chrX:37430822-37543716:+	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	1	2	0	5	2	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	SF1--GNAS	2	0	SF1	3289	chr11:64543970:-	GNAS	32063	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_FI:{Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=3,Pituitary=3,Minor_Salivary_Gland=1,Brain_-_Hypothalamus=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	4	13	1	15	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	SPIN1--S1PR3	2	0	SPIN1	1120	chr9:91003453:+	S1PR3	23488	chr9:91615969:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	SPIN1->chr9:91003334-91093609:+,spindlin_1,S1PR3->chr9:91606362-91619925:+,sphingosine-1-phosphate_receptor_3	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	SUMF2--CCT6A	2	0	SUMF2	3658	chr7:56140804:+	CCT6A	20326	chr7:56127962:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[13],SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	LN382_CENTRAL_NERVOUS_SYSTEM	1	1	0.0239	TRUE	0	5	0	5	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	CLTC--VMP1	1	2	CLTC	1316	chr17:57697534:+	VMP1	38263	chr17:57784888:+	ONLY_REF_SPLICE	YES	732	0	0	1	0.0119	0.0239	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	LN382_CENTRAL_NERVOUS_SYSTEM	0	1	0.0358	FALSE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	CLTC--VMP1	1	2	CLTC	1316	chr17:57697534:+	VMP1	53132	chr17:57915656:+	ONLY_REF_SPLICE	YES	732	503	0	0.01	0.0119	0.0239	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0358	FALSE	0	6	0	10	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ADCY9--NSMCE1	1	1	ADCY9	6904	chr16:4057369:-	NSMCE1	30036	chr16:27268902:-	ONLY_REF_SPLICE	YES	34	15	0.06	0.12	0.0119	0.0119	ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,NSMCE1->NSE1_homolog,_SMC5-SMC6_complex_component,chr16:27236312-27280115:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.06	0.12	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ADCY9--NSMCE1	1	1	ADCY9	3436	chr16:4163751:-	NSMCE1	30036	chr16:27268902:-	ONLY_REF_SPLICE	NO	42	15	0.05	0.12	0.0119	0.0119	ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,NSMCE1->NSE1_homolog,_SMC5-SMC6_complex_component,chr16:27236312-27280115:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.05	0.12	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	APP--COL6A3	1	1	APP	6383	chr21:27462259:-	COL6A3	39069	chr2:238290142:-	ONLY_REF_SPLICE	YES	1150	4090	0	0	0.0119	0.0119	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	LN382_CENTRAL_NERVOUS_SYSTEM	0	0	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	1	1	CD44	11925	chr11:35223334:+	PDHX	40918	chr11:35006117:+	ONLY_REF_SPLICE	YES	4984	130	0	0.02	0.0119	0.0119	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	CLDN12--DPYD	1	1	CLDN12	4834	chr7:90034922:+	DPYD	40520	chr1:98039526:-	ONLY_REF_SPLICE	YES	230	148	0.01	0.01	0.0119	0.0119	CLDN12->chr7:90013035-90142716:+,claudin_12,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	LN382_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	COL1A2--COL6A2	1	1	COL1A2	19624	chr7:94047143:+	COL6A2	42516	chr21:47536565:+	ONLY_REF_SPLICE	YES	6844	2228	0	0	0.0119	0.0119	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=4;pct=0.05%;dist=Cells_-_Transformed_fibroblasts=4},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	LN382_CENTRAL_NERVOUS_SYSTEM	0	0	0.0238	FALSE	0	0	0	2	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	COL1A2--EEF1D	1	1	COL1A2	15874	chr7:94043259:+	EEF1D	51518	chr8:144663876:-	ONLY_REF_SPLICE	YES	8491	2130	0	0	0.0119	0.0119	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	LN382_CENTRAL_NERVOUS_SYSTEM	0	0	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	GDAP1--RP11-758M4.1	1	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	NO	57	0	0.03	1	0.0119	0.0119	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0238	TRUE	7	28	0	43	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	LAMB1--HNRNPH1	1	1	LAMB1	21656	chr7:107591671:-	HNRNPH1	42617	chr5:179048398:-	ONLY_REF_SPLICE	YES	2782	1089	0	0	0.0119	0.0119	LAMB1->chr7:107564244-107643700:-,laminin_subunit_beta_1,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	LN382_CENTRAL_NERVOUS_SYSTEM	0	0	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	PDE7A--FNTA	1	1	PDE7A	7679	chr8:66691955:-	FNTA	31267	chr8:42919244:+	ONLY_REF_SPLICE	YES	25	186	0.07	0.01	0.0119	0.0119	PDE7A->chr8:66629745-66754557:-,phosphodiesterase_7A,FNTA->chr8:42889337-42940931:+,farnesyltransferase,_CAAX_box,_alpha	LN382_CENTRAL_NERVOUS_SYSTEM	0.01	0.07	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	PDGFD--DYNC2H1	1	1	PDGFD	1576	chr11:104034532:-	DYNC2H1	99827	chr11:103228971:+	ONLY_REF_SPLICE	YES	461	58	0	0.03	0.0119	0.0119	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},PDGFD->chr11:103777914-104035107:-,platelet_derived_growth_factor_D,DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	PHF20L1--CHMP1A	1	1	PHF20L1	15107	chr8:133823373:+	CHMP1A	44993	chr16:89713739:-	ONLY_REF_SPLICE	YES	112	286	0.02	0.01	0.0119	0.0119	GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Lung=1,Thyroid=1,Whole_Blood=1},PHF20L1->PHD_finger_protein_20-like_1,chr8:133787618-133861052:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	RAB8B--TPM1	1	1	RAB8B	1280	chr15:63481947:+	TPM1	25107	chr15:63349184:+	ONLY_REF_SPLICE	YES	208	2064	0.01	0	0.0119	0.0119	RAB8B->RAB8B,_member_RAS_oncogene_family,chr15:63481668-63559981:+,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	LN382_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0238	FALSE	1	0	0	3	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	TPST1--GS1-124K5.4	1	1	TPST1	5907	chr7:65751696:+	GS1-124K5.4	15884	chr7:65960242:+	ONLY_REF_SPLICE	YES	293	28	0.01	0.07	0.0119	0.0119	NEIGHBORS[73163],TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,GS1-124K5.4->chr7:65958693-65960461:+	LN382_CENTRAL_NERVOUS_SYSTEM	0.01	0.07	0.0238	FALSE	17	126	3	8	0	FALSE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	TSPAN5--ADH1C	1	1	TSPAN5	5664	chr4:99428829:-	ADH1C	22642	chr4:100269003:-	ONLY_REF_SPLICE	YES	36	0	0.05	1	0.0119	0.0119	TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,ADH1C->alcohol_dehydrogenase_1C_(class_I),_gamma_polypeptide,chr4:100257649-100274184:-	LN382_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000215
LN382_CENTRAL_NERVOUS_SYSTEM	ZNF519--FAM120B	1	1	ZNF519	2343	chr18:14124349:-	FAM120B	35706	chr6:170704575:+	ONLY_REF_SPLICE	NO	30	49	0.06	0.04	0.0119	0.0119	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	LN382_CENTRAL_NERVOUS_SYSTEM	0.04	0.06	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000215
ZR751_BREAST	EYA3--MST1P2	21	2	EYA3	5465	chr1:28365350:-	MST1P2	31262	chr1:16973958:+	ONLY_REF_SPLICE	YES	2	3	0.92	0.88	0.3523	0.0336	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,MST1P2->chr1:16972069-16976914:+,macrophage_stimulating_1_(hepatocyte_growth_factor-like)_pseudogene_2	ZR751_BREAST	0.88	0.92	0.3859	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	TIMM23B--LINC00843	14	5	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.95	0.2349	0.0839	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ZR751_BREAST	0.95	1	0.3188	TRUE	508	994	45	981	0	FALSE	ACH-000097
ZR751_BREAST	SREK1--HOMER1	13	4	SREK1	12394	chr5:65460725:+	HOMER1	32540	chr5:78752841:-	ONLY_REF_SPLICE	YES	16	1	0.52	0.94	0.2181	0.0671	{Klijn_CCL:Breast=1},SREK1->chr5:65435799-65479443:+,splicing_regulatory_glutamic_acid/lysine-rich_protein_1,HOMER1->chr5:78668459-78810040:-,homer_scaffolding_protein_1	ZR751_BREAST	0.52	0.94	0.2852	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	STAG3L4--TYW1	7	1	STAG3L4	2362	chr7:66771070:+	TYW1	22522	chr7:66548417:+	ONLY_REF_SPLICE	YES	8	3	0.5	0.73	0.1174	0.0168	LOCAL_REARRANGEMENT:+:[63107],STAG3L4->chr7:66767608-66786513:+,stromal_antigen_3-like_4_(pseudogene),TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	ZR751_BREAST	0.5	0.73	0.1342	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	TIMM23--RP11-464F9.1	7	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	18	3	0.31	0.73	0.1174	0.0168	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ZR751_BREAST	0.31	0.73	0.1342	TRUE	519	3926	326	965	0	FALSE	ACH-000097
ZR751_BREAST	ESR1--CCDC170	6	4	ESR1	3373	chr6:152023140:+	CCDC170	38747	chr6:151894309:+	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.1007	0.0671	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	ZR751_BREAST	0.91	1	0.1678	TRUE	0	1	0	3	1	TRUE	ACH-000097
ZR751_BREAST	MINOS1--RCC2	7	0	MINOS1	1127	chr1:19923603:+	RCC2	19194	chr1:17755695:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1174	0	MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,RCC2->Oncogene{Bushman},chr1:17733256-17766220:-,regulator_of_chromosome_condensation_2	ZR751_BREAST	1	1	0.1174	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	CHD6--BPI	6	0	CHD6	1155	chr20:40246979:-	BPI	73744	chr20:36962832:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1007	0	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,BPI->bactericidal/permeability-increasing_protein,chr20:36888551-36965907:+	ZR751_BREAST	1	1	0.1007	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	COG5--SLC26A3	4	1	COG5	3910	chr7:107194730:-	SLC26A3	49308	chr7:107412553:-	ONLY_REF_SPLICE	YES	10	0	0.33	1	0.0671	0.0168	COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5,SLC26A3->chr7:107405912-107443670:-,solute_carrier_family_26_member_3	ZR751_BREAST	0.33	1	0.0839	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	AFG3L2--SPIRE1	4	0	AFG3L2	1346	chr18:12376968:-	SPIRE1	31157	chr18:12546903:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[69198],AFG3L2->AFG3_like_matrix_AAA_peptidase_subunit_2,chr18:12328943-12377313:-,SPIRE1->chr18:12446511-12658133:-,spire_type_actin_nucleation_factor_1	ZR751_BREAST	1	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	BOP1--ARHGAP39	4	0	BOP1	4671	chr8:145500212:-	ARHGAP39	17503	chr8:145781027:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,ARHGAP39->Rho_GTPase_activating_protein_39,chr8:145754563-145911194:-	ZR751_BREAST	1	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	DDI2--MKNK1-AS1	4	0	DDI2	6940	chr1:15964929:+	MKNK1-AS1	28391	chr1:47023897:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0	DDI2->DNA_damage_inducible_1_homolog_2,chr1:15943995-15995539:+,MKNK1-AS1->MKNK1_antisense_RNA_1,chr1:47004368-47035927:+	ZR751_BREAST	1	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	EXOSC10--KPNA6	2	5	EXOSC10	13242	chr1:11136899:-	KPNA6	28217	chr1:32622454:+	ONLY_REF_SPLICE	YES	14	2	0.33	0.78	0.0336	0.0839	{Klijn_CCL:Breast=1},EXOSC10->chr1:11126675-11159938:-,exosome_component_10,KPNA6->chr1:32573639-32642169:+,karyopherin_subunit_alpha_6	ZR751_BREAST	0.33	0.78	0.1175	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	KIF18B--CDK5RAP3	3	0	KIF18B	10526	chr17:43003724:-	CDK5RAP3	25255	chr17:46057981:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	KIF18B->chr17:43002077-43025082:-,kinesin_family_member_18B,CDK5RAP3->CDK5_regulatory_subunit_associated_protein_3,chr17:46045176-46059140:+	ZR751_BREAST	1	1	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	MTND6P4--MT-TE	3	0	MTND6P4	1052	chr5:134259864:+	MT-TE	4548	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	MTND6P4->chr5:134259813-134260334:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6_pseudogene_4,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ZR751_BREAST	1	1	0.0503	FALSE	0	5	0	2	0	FALSE	ACH-000097
ZR751_BREAST	MTND6P4--MT-TE	3	0	MTND6P4	1054	chr5:134259866:+	MT-TE	4551	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	MTND6P4->chr5:134259813-134260334:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6_pseudogene_4,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ZR751_BREAST	1	1	0.0503	FALSE	0	5	0	2	0	FALSE	ACH-000097
ZR751_BREAST	SAMD11--MT-ND3	3	0	SAMD11	6539	chr1:874764:+	MT-ND3	14772	chrM:10100:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	SAMD11->chr1:860260-879955:+,sterile_alpha_motif_domain_containing_11,MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3	ZR751_BREAST	1	1	0.0503	FALSE	0	0	0	1	0	FALSE	ACH-000097
ZR751_BREAST	SRPR--HMGB3	3	0	SRPR	3374	chr11:126136666:-	HMGB3	17327	chrX:150158662:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	SRPR->chr11:126132814-126139039:-,HMGB3->chrX:150148982-150159248:+,high_mobility_group_box_3	ZR751_BREAST	1	1	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	SLC2A1--CAPZB	2	1	SLC2A1	1226	chr1:43424305:-	CAPZB	17847	chr1:19746244:-	ONLY_REF_SPLICE	YES	15	10	0.17	0.23	0.0336	0.0168	{Klijn_CCL:Breast=1},SLC2A1->chr1:43391052-43424530:-,solute_carrier_family_2_member_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	ZR751_BREAST	0.17	0.23	0.0504	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	AC002985.3--ZER1	2	0	AC002985.3	3518	chr19:19042134:-	ZER1	17068	chr9:131505024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	AC002985.3->chr19:19017822-19045206:-,ZER1->chr9:131492065-131534693:-,zyg-11_related_cell_cycle_regulator	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	DPM1--CLEC2D	2	0	DPM1	6776	chr20:49557402:-	CLEC2D	17412	chr12:9833519:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	DPM1->chr20:49551404-49575092:-,dolichyl-phosphate_mannosyltransferase_polypeptide_1,_catalytic_subunit,CLEC2D->C-type_lectin_domain_family_2_member_D,chr12:9817565-9848413:+	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	FHOD1--YTHDC2	2	0	FHOD1	1449	chr16:67281113:-	YTHDC2	44628	chr5:112929179:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	FHOD1->chr16:67263290-67281561:-,formin_homology_2_domain_containing_1,YTHDC2->YTH_domain_containing_2,chr5:112849380-112930982:+	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	HELZ--RFWD2	2	0	HELZ	4266	chr17:65235549:-	RFWD2	53933	chr1:176153828:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	HELZ->chr17:65066554-65242105:-,helicase_with_zinc_finger,RFWD2->chr1:175913967-176176629:-,ring_finger_and_WD_repeat_domain_2	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	KIAA1143--RAB25	2	0	KIAA1143	3192	chr3:44794837:-	RAB25	14643	chr1:156038061:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	KIAA1143->KIAA1143,chr3:44779153-44803154:-,RAB25->RAB25,_member_RAS_oncogene_family,chr1:156030951-156040295:+	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	NOC4L--FBRSL1	2	0	NOC4L	5448	chr12:132633440:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	ZR751_BREAST	1	1	0.0336	TRUE	4	9	0	12	0	FALSE	ACH-000097
ZR751_BREAST	QARS--VPS29	2	0	QARS	7236	chr3:49136318:-	VPS29	13169	chr12:110939913:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	QARS->chr3:49133365-49142553:-,glutaminyl-tRNA_synthetase,VPS29->VPS29_retromer_complex_component,chr12:110928902-110939922:-	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	RNF213--SMARCD2	2	0	RNF213	40318	chr17:78324196:+	SMARCD2	85906	chr17:61912927:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,SMARCD2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_d,_member_2,chr17:61909444-61920425:-	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	RP11-357C3.3--ARHGEF9	2	0	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	22895	chrX:62926329:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	ZR751_BREAST	1	1	0.0336	TRUE	0	3	0	3	0	TRUE	ACH-000097
ZR751_BREAST	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ZR751_BREAST	1	1	0.0336	FALSE	515	4851	409	746	0	FALSE	ACH-000097
ZR751_BREAST	SESTD1--SEC63	2	0	SESTD1	15349	chr2:179989091:-	SEC63	53191	chr6:108204350:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	SESTD1->SEC14_and_spectrin_domain_containing_1,chr2:179966419-180129517:-,SEC63->SEC63_homolog,_protein_translocation_regulator,chr6:108188960-108279393:-	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	SRRM2--RPL11	2	0	SRRM2	7483	chr16:2810500:+	RPL11	26495	chr1:24022288:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	SRRM2->chr16:2802330-2822539:+,serine/arginine_repetitive_matrix_2,RPL11->chr1:24018269-24022915:+,ribosomal_protein_L11	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	THRAP3--CSMD2	2	0	THRAP3	1090	chr1:36690106:+	CSMD2	22025	chr1:34554794:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,CSMD2->CUB_and_Sushi_multiple_domains_2,chr1:33979609-34631443:-	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	ZR751_BREAST	1	1	0.0336	FALSE	272	151	14	158	0	FALSE	ACH-000097
ZR751_BREAST	ZMIZ2--C9orf3	2	0	ZMIZ2	8754	chr7:44800192:+	C9orf3	57832	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	ZMIZ2->chr7:44788180-44809477:+,zinc_finger_MIZ-type_containing_2,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	ZR751_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	HOMER1--SREK1	1	3	HOMER1	2448	chr5:78808593:-	SREK1	34325	chr5:65465879:+	ONLY_REF_SPLICE	YES	1	15	0.8	0.21	0.0168	0.0503	{Klijn_CCL:Breast=1},HOMER1->chr5:78668459-78810040:-,homer_scaffolding_protein_1,SREK1->chr5:65435799-65479443:+,splicing_regulatory_glutamic_acid/lysine-rich_protein_1	ZR751_BREAST	0.21	0.8	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	STAG3L4--TYW1	1	1	STAG3L4	1265	chr7:66767872:+	TYW1	22522	chr7:66548417:+	ONLY_REF_SPLICE	YES	3	3	0.4	0.4	0.0168	0.0168	LOCAL_REARRANGEMENT:+:[63107],STAG3L4->chr7:66767608-66786513:+,stromal_antigen_3-like_4_(pseudogene),TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	ZR751_BREAST	0.4	0.4	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
ZR751_BREAST	ZNF232--SCIMP	1	1	ZNF232	5359	chr17:5012221:-	SCIMP	13807	chr17:5118293:-	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0168	0.0168	LOCAL_REARRANGEMENT:-:[85845],ZNF232->chr17:5008836-5026411:-,zinc_finger_protein_232,SCIMP->SLP_adaptor_and_CSK_interacting_membrane_protein,chr17:5112256-5138155:-	ZR751_BREAST	0.33	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000097
HS281T_FIBROBLAST	COL1A1--FN1	377	62	COL1A1	12966	chr17:48266809:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	NO	12064	8068	0.04	0.05	4.0913	0.6728	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS281T_FIBROBLAST	0.04	0.05	4.7641	TRUE	0	0	0	17	0	FALSE	ACH-000083
HS281T_FIBROBLAST	FN1--COL1A1	354	2	FN1	36954	chr2:216243980:-	COL1A1	69586	chr17:48264124:-	INCL_NON_REF_SPLICE	YES	11925	9588	0.03	0.04	3.8417	0.0217	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS281T_FIBROBLAST	0.03	0.04	3.8634	TRUE	0	0	0	13	0	FALSE	ACH-000083
HS281T_FIBROBLAST	TFG--GPR128	246	105	TFG	5019	chr3:100438902:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	251	0	0.58	1	2.6697	1.1395	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	HS281T_FIBROBLAST	0.58	1	3.8092	TRUE	12	123	7	17	0	FALSE	ACH-000083
HS281T_FIBROBLAST	TIMM23B--LINC00843	98	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0635	0.3581	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS281T_FIBROBLAST	0.99	1	1.4216	TRUE	508	994	45	981	0	FALSE	ACH-000083
HS281T_FIBROBLAST	TIMM23--RP11-464F9.1	63	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	220	4	0.23	0.94	0.6837	0.0434	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS281T_FIBROBLAST	0.23	0.94	0.7271	TRUE	519	3926	326	965	0	FALSE	ACH-000083
HS281T_FIBROBLAST	RP11-680G10.1--GSE1	35	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	5	1	0.88	0.3798	0.0326	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS281T_FIBROBLAST	0.88	1	0.4124	TRUE	465	1949	224	605	0	FALSE	ACH-000083
HS281T_FIBROBLAST	MT-ND6--MT-TE	27	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.293	0.0326	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS281T_FIBROBLAST	0.97	1	0.3256	FALSE	499	1288	110	792	0	FALSE	ACH-000083
HS281T_FIBROBLAST	COL1A1--FN1	11	60	COL1A1	12718	chr17:48267057:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	13619	8068	0.01	0.01	0.1194	0.6511	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS281T_FIBROBLAST	0.01	0.01	0.7705	TRUE	0	0	0	17	0	FALSE	ACH-000083
HS281T_FIBROBLAST	MT-TA--MT-TC	24	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2605	0.0217	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS281T_FIBROBLAST	1	1	0.2822	FALSE	462	80	0	856	0	FALSE	ACH-000083
HS281T_FIBROBLAST	VIM--COL1A2	20	0	VIM	2175	chr10:17271432:+	COL1A2	16093	chr7:94029518:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.217	0	GTEx&tcga_normals:5/3694=0.14%,VIM->chr10:17270258-17279592:+,vimentin,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS281T_FIBROBLAST	1	1	0.217	TRUE	0	0	0	1	0	TRUE	ACH-000083
HS281T_FIBROBLAST	SERPINE1--CCDC80	19	0	SERPINE1	9721	chr7:100781638:+	CCDC80	16674	chr3:112359515:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2062	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,CCDC80->chr3:112323407-112368377:-,coiled-coil_domain_containing_80	HS281T_FIBROBLAST	1	1	0.2062	TRUE	0	0	0	1	0	TRUE	ACH-000083
HS281T_FIBROBLAST	ZNF654--HMGB2	18	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1953	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HS281T_FIBROBLAST	1	1	0.1953	TRUE	0	0	0	518	0	FALSE	ACH-000083
HS281T_FIBROBLAST	COL1A1--ACTB	9	34	COL1A1	12691	chr17:48267084:-	ACTB	26940	chr7:5568833:-	INCL_NON_REF_SPLICE	NO	13765	13058	0	0	0.0977	0.369	GTEx&tcga_normals:23/3694=0.62%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS281T_FIBROBLAST	0	0	0.4667	FALSE	0	0	0	1	0	FALSE	ACH-000083
HS281T_FIBROBLAST	COL1A1--FN1	5	47	COL1A1	15650	chr17:48264125:-	FN1	58080	chr2:216243979:-	INCL_NON_REF_SPLICE	YES	9628	11922	0.01	0	0.0543	0.5101	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS281T_FIBROBLAST	0	0.01	0.5644	TRUE	0	0	0	18	0	FALSE	ACH-000083
HS281T_FIBROBLAST	MT-ND6--MT-TE	16	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1736	0.0326	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS281T_FIBROBLAST	0.95	1	0.2062	FALSE	499	1288	110	792	0	FALSE	ACH-000083
HS281T_FIBROBLAST	COL1A1--ACTB	4	49	COL1A1	14926	chr17:48264849:-	ACTB	26935	chr7:5568838:-	INCL_NON_REF_SPLICE	YES	10626	12878	0	0	0.0434	0.5318	GTEx&tcga_normals:23/3694=0.62%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS281T_FIBROBLAST	0	0	0.5752	TRUE	0	0	0	1	0	FALSE	ACH-000083
HS281T_FIBROBLAST	COL1A1--ACTB	4	42	COL1A1	12975	chr17:48266800:-	ACTB	26940	chr7:5568833:-	INCL_NON_REF_SPLICE	YES	11545	13058	0	0	0.0434	0.4558	GTEx&tcga_normals:23/3694=0.62%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS281T_FIBROBLAST	0	0	0.4992	TRUE	0	0	0	1	0	FALSE	ACH-000083
HS281T_FIBROBLAST	COL1A1--ACTB	9	18	COL1A1	7129	chr17:48272646:-	ACTB	26940	chr7:5568833:-	INCL_NON_REF_SPLICE	YES	12389	13058	0	0	0.0977	0.1953	GTEx&tcga_normals:23/3694=0.62%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS281T_FIBROBLAST	0	0	0.293	TRUE	0	0	0	1	0	FALSE	ACH-000083
HS281T_FIBROBLAST	COL1A1--FN1	3	39	COL1A1	9381	chr17:48270394:-	FN1	26925	chr2:216295503:-	INCL_NON_REF_SPLICE	YES	12852	9731	0	0	0.0326	0.4232	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS281T_FIBROBLAST	0	0	0.4558	TRUE	0	0	0	8	0	FALSE	ACH-000083
HS281T_FIBROBLAST	COL1A1--FN1	12	3	COL1A1	5234	chr17:48274541:-	FN1	37579	chr2:216274357:-	INCL_NON_REF_SPLICE	NO	9930	10689	0	0	0.1302	0.0326	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS281T_FIBROBLAST	0	0	0.1628	FALSE	0	0	0	1	0	FALSE	ACH-000083
HS281T_FIBROBLAST	MT-ND5--MT-ATP8	12	1	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	NO	2193	4	0.01	0.76	0.1302	0.0109	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS281T_FIBROBLAST	0.01	0.76	0.1411	FALSE	43	37	8	105	0	FALSE	ACH-000083
HS281T_FIBROBLAST	COL1A1--FN1	4	30	COL1A1	13456	chr17:48266319:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	10890	12850	0	0	0.0434	0.3256	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS281T_FIBROBLAST	0	0	0.369	TRUE	0	0	0	16	0	FALSE	ACH-000083
HS281T_FIBROBLAST	COL1A1--FN1	9	9	COL1A1	13242	chr17:48266533:-	FN1	63801	chr2:216236956:-	INCL_NON_REF_SPLICE	YES	11988	12503	0	0	0.0977	0.0977	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS281T_FIBROBLAST	0	0	0.1954	TRUE	0	0	0	8	0	FALSE	ACH-000083
HS281T_FIBROBLAST	MT-ND5--MT-ATP8	11	1	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4	1	0.75	0.92	0.1194	0.0109	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS281T_FIBROBLAST	0.75	0.92	0.1303	FALSE	43	37	8	105	0	FALSE	ACH-000083
HS281T_FIBROBLAST	RP11-680G10.1--GSE1	10	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.1085	0.0543	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS281T_FIBROBLAST	0.94	1	0.1628	TRUE	458	1351	185	561	0	FALSE	ACH-000083
HS281T_FIBROBLAST	MT-ND6--MT-TE	8	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0868	0.1194	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS281T_FIBROBLAST	1	1	0.2062	FALSE	499	1288	110	792	0	FALSE	ACH-000083
HS281T_FIBROBLAST	COL1A1--FN1	5	22	COL1A1	12367	chr17:48267408:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	12643	12850	0	0	0.0543	0.2388	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS281T_FIBROBLAST	0	0	0.2931	TRUE	0	0	0	13	0	FALSE	ACH-000083
HS281T_FIBROBLAST	COL1A1--ACTB	5	17	COL1A1	7147	chr17:48272628:-	ACTB	26958	chr7:5568815:-	INCL_NON_REF_SPLICE	YES	12156	12782	0	0	0.0543	0.1845	GTEx&tcga_normals:23/3694=0.62%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS281T_FIBROBLAST	0	0	0.2388	TRUE	0	0	0	1	0	FALSE	ACH-000083
HS281T_FIBROBLAST	MT-ND6--MT-TE	4	19	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0434	0.2062	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS281T_FIBROBLAST	1	1	0.2496	FALSE	499	1288	110	792	0	FALSE	ACH-000083
HS281T_FIBROBLAST	VIM--TPM2	7	1	VIM	2142	chr10:17271399:+	TPM2	13302	chr9:35689920:-	INCL_NON_REF_SPLICE	YES	2695	15	0	0.35	0.076	0.0109	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS281T_FIBROBLAST	0	0.35	0.0869	FALSE	0	0	0	8	0	FALSE	ACH-000083
HS281T_FIBROBLAST	VIM--TPM2	7	0	VIM	2156	chr10:17271413:+	TPM2	13400	chr9:35689822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.076	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS281T_FIBROBLAST	1	1	0.076	TRUE	0	0	0	8	0	TRUE	ACH-000083
HS281T_FIBROBLAST	COL1A1--ACTB	4	11	COL1A1	6252	chr17:48273523:-	ACTB	26940	chr7:5568833:-	INCL_NON_REF_SPLICE	YES	12268	13058	0	0	0.0434	0.1194	GTEx&tcga_normals:23/3694=0.62%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS281T_FIBROBLAST	0	0	0.1628	TRUE	0	0	0	1	0	FALSE	ACH-000083
HS281T_FIBROBLAST	RP4-565E6.1--HYDIN	6	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0651	0.0326	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS281T_FIBROBLAST	1	1	0.0977	TRUE	456	1387	91	133	0	FALSE	ACH-000083
HS281T_FIBROBLAST	MT-TA--MT-TC	6	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0.0217	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS281T_FIBROBLAST	1	1	0.0868	FALSE	462	80	0	856	0	FALSE	ACH-000083
HS281T_FIBROBLAST	MT-CO3--MT-ATP6	6	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS281T_FIBROBLAST	1	1	0.0651	FALSE	189	492	56	216	0	FALSE	ACH-000083
HS281T_FIBROBLAST	FN1--COL1A1	4	6	FN1	18663	chr2:216272012:-	COL1A1	64011	chr17:48269699:-	INCL_NON_REF_SPLICE	NO	9941	11301	0	0	0.0434	0.0651	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS281T_FIBROBLAST	0	0	0.1085	FALSE	0	0	0	3	0	FALSE	ACH-000083
HS281T_FIBROBLAST	COL1A1--FN1	3	9	COL1A1	7365	chr17:48272410:-	FN1	56498	chr2:216245561:-	INCL_NON_REF_SPLICE	YES	12481	12516	0	0	0.0326	0.0977	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS281T_FIBROBLAST	0	0	0.1303	TRUE	0	0	0	1	0	FALSE	ACH-000083
HS281T_FIBROBLAST	PRR16--CTD-2334D19.1	5	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	92	0	0.06	1	0.0543	0.0109	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS281T_FIBROBLAST	0.06	1	0.0652	FALSE	56	216	12	147	0	FALSE	ACH-000083
HS281T_FIBROBLAST	RP1-34H18.1--NAV3	5	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	2	1	0.75	0.0543	0.0109	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HS281T_FIBROBLAST	0.75	1	0.0652	TRUE	254	575	65	124	0	FALSE	ACH-000083
HS281T_FIBROBLAST	CTGF--MT2A	5	0	CTGF	1166	chr6:132272348:-	MT2A	7582	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS281T_FIBROBLAST	1	1	0.0543	TRUE	0	0	0	3	0	TRUE	ACH-000083
HS281T_FIBROBLAST	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS281T_FIBROBLAST	1	1	0.0543	FALSE	499	1288	110	792	0	FALSE	ACH-000083
HS281T_FIBROBLAST	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS281T_FIBROBLAST	1	1	0.0543	FALSE	462	80	0	856	0	FALSE	ACH-000083
HS281T_FIBROBLAST	VIM--TMSB4X	5	0	VIM	2162	chr10:17271419:+	TMSB4X	13357	chrX:12994379:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS281T_FIBROBLAST	1	1	0.0543	TRUE	0	0	0	15	0	TRUE	ACH-000083
HS281T_FIBROBLAST	VIM--TPM2	5	0	VIM	2115	chr10:17271372:+	TPM2	13298	chr9:35689924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS281T_FIBROBLAST	1	1	0.0543	TRUE	0	0	0	8	0	TRUE	ACH-000083
HS281T_FIBROBLAST	MYH9--MT2A	4	2	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	1592	0	0	1	0.0434	0.0217	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS281T_FIBROBLAST	0	1	0.0651	FALSE	0	0	0	24	0	FALSE	ACH-000083
HS281T_FIBROBLAST	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0434	0.0109	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS281T_FIBROBLAST	1	1	0.0543	FALSE	292	1546	117	613	0	FALSE	ACH-000083
HS281T_FIBROBLAST	COL1A2--COL6A2	3	4	COL1A2	27460	chr7:94054979:+	COL6A2	47434	chr21:47541483:+	INCL_NON_REF_SPLICE	NO	10400	1900	0	0	0.0326	0.0434	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=4;pct=0.05%;dist=Cells_-_Transformed_fibroblasts=4},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS281T_FIBROBLAST	0	0	0.076	FALSE	0	0	0	1	0	FALSE	ACH-000083
HS281T_FIBROBLAST	COL1A1--FN1	3	3	COL1A1	6259	chr17:48273516:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	12448	12850	0	0	0.0326	0.0326	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS281T_FIBROBLAST	0	0	0.0652	FALSE	0	0	0	10	0	FALSE	ACH-000083
HS281T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0.0326	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS281T_FIBROBLAST	1	1	0.0652	FALSE	515	4851	409	746	0	FALSE	ACH-000083
HS281T_FIBROBLAST	CTGF--ACTB	3	0	CTGF	1136	chr6:132272378:-	ACTB	10623	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS281T_FIBROBLAST	1	1	0.0326	TRUE	0	0	0	9	0	TRUE	ACH-000083
HS281T_FIBROBLAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS281T_FIBROBLAST	1	1	0.0326	FALSE	183	104	9	328	0	FALSE	ACH-000083
HS281T_FIBROBLAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS281T_FIBROBLAST	1	1	0.0326	FALSE	183	104	9	328	0	FALSE	ACH-000083
HS281T_FIBROBLAST	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS281T_FIBROBLAST	1	1	0.0326	FALSE	189	492	56	216	0	FALSE	ACH-000083
HS281T_FIBROBLAST	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS281T_FIBROBLAST	1	1	0.0326	FALSE	499	1288	110	792	0	FALSE	ACH-000083
HS281T_FIBROBLAST	RP11-155G15.2--RP11-1E3.1	3	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HS281T_FIBROBLAST	1	1	0.0326	FALSE	46	201	11	112	0	FALSE	ACH-000083
HS281T_FIBROBLAST	VIM--TMSB4X	3	0	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS281T_FIBROBLAST	1	1	0.0326	TRUE	0	0	0	15	0	TRUE	ACH-000083
HS281T_FIBROBLAST	VIM--TPM2	3	0	VIM	2476	chr10:17271733:+	TPM2	15355	chr9:35685502:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS281T_FIBROBLAST	1	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000083
HS281T_FIBROBLAST	VIM--TPM2	3	0	VIM	2115	chr10:17271372:+	TPM2	13337	chr9:35689885:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS281T_FIBROBLAST	1	1	0.0326	TRUE	0	0	0	8	0	TRUE	ACH-000083
HS281T_FIBROBLAST	VIM--TPM2	3	0	VIM	2524	chr10:17271781:+	TPM2	15403	chr9:35685454:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS281T_FIBROBLAST	1	1	0.0326	TRUE	0	0	0	2	0	TRUE	ACH-000083
HS281T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0.0326	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS281T_FIBROBLAST	1	1	0.0543	FALSE	407	2205	196	549	0	FALSE	ACH-000083
HS281T_FIBROBLAST	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.25	1	0.0217	0.0217	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS281T_FIBROBLAST	0.25	1	0.0434	FALSE	164	806	69	479	0	FALSE	ACH-000083
HS281T_FIBROBLAST	COL1A2--COL6A2	1	5	COL1A2	27456	chr7:94054975:+	COL6A2	46926	chr21:47540975:+	ONLY_REF_SPLICE	NO	9456	1853	0	0	0.0109	0.0543	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=4;pct=0.05%;dist=Cells_-_Transformed_fibroblasts=4},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS281T_FIBROBLAST	0	0	0.0652	FALSE	0	0	0	1	0	FALSE	ACH-000083
HS281T_FIBROBLAST	RPSAP52--HMGA2	2	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	10	163	0.23	0.02	0.0217	0.0109	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HS281T_FIBROBLAST	0.02	0.23	0.0326	FALSE	0	59	0	125	0	FALSE	ACH-000083
HS281T_FIBROBLAST	TBC1D15--ZCWPW1	2	0	TBC1D15	15680	chr12:72291721:+	ZCWPW1	37460	chr7:100013720:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	TBC1D15->TBC1_domain_family_member_15,chr12:72233487-72320629:+,ZCWPW1->chr7:99998449-100026615:-,zinc_finger_CW-type_and_PWWP_domain_containing_1	HS281T_FIBROBLAST	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000083
HS281T_FIBROBLAST	COL1A2--COL6A2	1	3	COL1A2	19624	chr7:94047143:+	COL6A2	42516	chr21:47536565:+	ONLY_REF_SPLICE	YES	6411	1776	0	0	0.0109	0.0326	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=4;pct=0.05%;dist=Cells_-_Transformed_fibroblasts=4},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS281T_FIBROBLAST	0	0	0.0435	FALSE	0	0	0	2	0	FALSE	ACH-000083
HS281T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	0	0.8	1	0.0109	0.0326	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS281T_FIBROBLAST	0.8	1	0.0435	FALSE	467	2173	244	435	0	FALSE	ACH-000083
HS281T_FIBROBLAST	PRR16--CTD-2334D19.1	1	1	PRR16	6887	chr5:119954260:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	89	0	0.02	1	0.0109	0.0109	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS281T_FIBROBLAST	0.02	1	0.0218	FALSE	0	2	0	14	0	FALSE	ACH-000083
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	628	101	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	3	1	1	5.0199	0.8073	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	5.8272	TRUE	361	258	24	38	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	252	107	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	44	100	0.89	0.78	2.0143	0.8553	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.89	2.8696	TRUE	0	2	1	16	2	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	204	38	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6307	0.3038	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.9345	TRUE	508	994	45	981	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	123	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	140	5	0.47	0.96	0.9832	0.016	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.96	0.9992	TRUE	519	3926	326	965	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	45	115	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	5570	chr1:149591759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3597	0.9192	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2789	TRUE	361	258	24	38	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	44	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3517	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3517	TRUE	0	0	0	518	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	38	5	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3443	0	0.01	1	0.3038	0.04	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.3438	FALSE	13	9	0	364	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	140	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	4	0	0.97	1	0.032	1.1191	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	1.1511	FALSE	344	826	44	306	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ILF3--RPL18A	33	14	ILF3	1227	chr19:10765163:+	RPL18A	27503	chr19:17973727:+	ONLY_REF_SPLICE	YES	636	4399	0.07	0.01	0.2638	0.1119	ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,RPL18A->chr19:17970685-17974962:+,ribosomal_protein_L18a	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.07	0.3757	TRUE	0	0	0	1	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	33	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2638	0.048	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3118	FALSE	462	80	0	856	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	32	5	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3452	0	0.01	1	0.2558	0.04	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.2958	FALSE	13	9	0	364	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	114	MT-ND4	1789	chrM:11548:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	2652	0	0.04	1	0.024	0.9113	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.9353	FALSE	344	827	44	306	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	30	2	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	4407	1	0.01	0.97	0.2398	0.016	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.97	0.2558	TRUE	0	0	0	100	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	4	105	BCR	20761	chr22:23631808:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	44	95	0.71	0.53	0.032	0.8393	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	0.71	0.8713	TRUE	0	2	1	16	2	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	96	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.024	0.7674	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.7914	FALSE	344	821	44	306	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ILF3--SYNE4	25	1	ILF3	5507	chr19:10782211:+	SYNE4	28922	chr19:36494573:-	ONLY_REF_SPLICE	YES	670	0	0.04	1	0.1998	0.008	ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,SYNE4->chr19:36494209-36499695:-,spectrin_repeat_containing_nuclear_envelope_family_member_4	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.2078	TRUE	0	0	0	1	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYL1--MT-ATP8	16	0	LYL1	3298	chr19:13211678:-	MT-ATP8	8232	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1279	0	LYL1->Oncogene{Bushman},chr19:13209847-13213975:-,lymphoblastic_leukemia_associated_hematopoiesis_regulator_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1279	FALSE	0	0	0	1	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	38	MT-CO3	1138	chrM:9344:+	MT-ATP6	4905	chrM:8647:+	INCL_NON_REF_SPLICE	NO	2	3	0.96	0.93	0.04	0.3038	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.96	0.3438	FALSE	189	492	56	216	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	41	MT-CO3	1220	chrM:9426:+	MT-ATP6	4919	chrM:8661:+	INCL_NON_REF_SPLICE	YES	3	7	0.94	0.86	0.024	0.3277	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	0.94	0.3517	FALSE	189	492	56	216	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1039	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1039	FALSE	499	1288	110	792	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	13	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1039	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1039	FALSE	272	151	14	158	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	38	MT-CO3	1220	chrM:9426:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	3	3	0.93	0.93	0.024	0.3038	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.93	0.3278	FALSE	189	492	56	216	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	11	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0879	0.048	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1359	FALSE	462	80	0	856	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	37	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.024	0.2958	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.3198	FALSE	344	821	44	306	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	36	MT-CO3	1083	chrM:9289:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	1	11	0.97	0.78	0.024	0.2878	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.97	0.3118	FALSE	189	492	56	216	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	11	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0879	0.024	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.1119	FALSE	16	356	14	466	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	11	2	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0879	0.016	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1039	TRUE	67	49	0	25	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	11	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.0879	0.008	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0959	FALSE	189	492	56	216	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	32	MT-CO3	1072	chrM:9278:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	0	11	1	0.76	0.024	0.2558	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.2798	FALSE	189	492	56	216	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	20	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6	0	0.81	1	0.048	0.1599	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.2079	FALSE	344	826	44	306	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	14	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.056	0.1119	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1679	FALSE	344	821	44	306	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	10	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0799	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0799	TRUE	0	0	0	81	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	9	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	39	11	0.22	0.5	0.0719	0.016	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.5	0.0879	TRUE	267	562	48	632	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	19	MT-CO3	1033	chrM:9239:+	MT-ATP6	4768	chrM:8510:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.1519	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1839	FALSE	189	492	56	216	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0.024	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0879	FALSE	499	1288	110	792	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ND4L	7	5	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1453	0	0.01	1	0.056	0.04	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.096	FALSE	1	1	0	107	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	8	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	6028	2	0	0.82	0.0639	0.008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.82	0.0719	FALSE	230	198	14	283	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0.008	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0719	FALSE	499	1288	110	792	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-3116E22.6--ZNF274	8	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0639	TRUE	0	0	0	13	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PABPC1--RPS28	8	0	PABPC1	2022	chr8:101734016:-	RPS28	18700	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0639	TRUE	0	0	0	6	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	6	6	HSP90AB1	7270	chr6:44221093:+	MT-RNR2	10834	chrM:1707:+	INCL_NON_REF_SPLICE	YES	3482	0	0	1	0.048	0.048	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.096	FALSE	13	9	0	364	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	6032	2	0	0.8	0.056	0.008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.8	0.064	FALSE	230	193	14	283	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.048	0.04	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.088	FALSE	499	1288	110	792	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.056	FALSE	344	821	44	306	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	3	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	7377	0	0	1	0.048	0.024	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.072	FALSE	231	217	16	283	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.04	0.048	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.088	FALSE	189	492	56	216	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	9	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.032	0.0719	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1039	FALSE	189	492	56	216	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	6	1	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.048	0.008	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.056	TRUE	0	2	0	37	2	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	37	12	0.16	0.37	0.04	0.016	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.37	0.056	TRUE	267	562	48	632	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	5	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1030	0	0.01	1	0.04	0.008	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.048	FALSE	0	0	0	189	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.04	FALSE	0	0	0	189	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	3	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	7277	131	0	0.05	0.032	0.024	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.056	FALSE	231	217	16	283	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	2	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.032	0.016	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.048	FALSE	189	492	56	216	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	7352	2	0	0.75	0.032	0.016	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.75	0.048	FALSE	231	217	16	283	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BSG--GZMM	4	1	BSG	2405	chr19:572701:+	GZMM	14559	chr19:547280:+	ONLY_REF_SPLICE	YES	409	0	0.01	1	0.032	0.008	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[21378],BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,GZMM->chr19:544034-549919:+,granzyme_M	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.04	FALSE	0	0	0	5	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	1	MT-ND4	1452	chrM:11211:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8296	2	0	0.71	0.032	0.008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.71	0.04	FALSE	231	217	16	283	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7026	2	0	0.71	0.032	0.008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.71	0.04	FALSE	231	205	14	283	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC004549.6--MT-ATP8	4	0	AC004549.6	1219	chr7:27779796:-	MT-ATP8	5962	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	AC004549.6->chr7:27773014-27780014:-,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.032	FALSE	0	1	0	3	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--GNAS	4	0	C17orf76-AS1	1593	chr17:16342728:+	GNAS	29039	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	C17orf76-AS1->chr17:16342136-16381992:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.032	TRUE	0	0	0	4	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	4	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.032	TRUE	347	1186	183	220	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL5	4	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.032	TRUE	0	0	0	39	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.032	TRUE	0	0	0	81	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ILF3--SYNE4	4	0	ILF3	5507	chr19:10782211:+	SYNE4	29073	chr19:36494422:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,SYNE4->chr19:36494209-36499695:-,spectrin_repeat_containing_nuclear_envelope_family_member_4	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.032	FALSE	189	492	56	216	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	7364	0	0	1	0.024	0.032	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.056	FALSE	231	217	16	283	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-319G9.5--WWOX	4	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.032	FALSE	154	425	28	76	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFP1--ZNRF1	4	0	ZFP1	1171	chr16:75182560:+	ZNRF1	17806	chr16:75127470:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[37498],ZFP1->ZFP1_zinc_finger_protein,chr16:75182390-75206134:+,ZNRF1->chr16:75032928-75144892:+,zinc_and_ring_finger_1,_E3_ubiquitin_protein_ligase	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	3	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	6967	0	0	1	0.024	0.024	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.048	FALSE	231	217	16	283	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGFBP4--NPM1	3	2	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	468	1	0.01	0.83	0.024	0.016	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.83	0.04	FALSE	0	0	0	38	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	8098	0	0	1	0.024	0.016	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.04	FALSE	231	217	16	283	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.024	0.016	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.04	FALSE	292	1546	117	613	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	21	0	0.28	1	0.016	0.048	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	1	0.064	FALSE	164	806	69	479	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLIC1--RPL7	3	1	CLIC1	4985	chr6:31701613:-	RPL7	14663	chr8:74203896:-	ONLY_REF_SPLICE	YES	1608	6298	0	0	0.024	0.008	CLIC1->chloride_intracellular_channel_1,chr6:31698358-31707540:-,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.032	FALSE	0	0	0	12	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	3	1	HSP90AB1	4415	chr6:44218238:+	MT-RNR2	11368	chrM:2241:+	INCL_NON_REF_SPLICE	YES	3060	9137	0	0	0.024	0.008	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.032	FALSE	0	0	0	11	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AHCY--NDUFV2	3	0	AHCY	10102	chr20:32878156:-	NDUFV2	16309	chr18:9102723:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	AHCY->adenosylhomocysteinase,chr20:32868074-32899608:-,NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX39B--EEF1A1	3	0	DDX39B	7280	chr6:31502806:-	EEF1A1	19267	chr6:74228798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	DDX39B->DEAD-box_helicase_39B,chr6:31497996-31510225:-,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1063	chrM:9269:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	FALSE	189	492	56	216	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	FALSE	189	492	56	216	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	FALSE	344	821	44	306	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	FALSE	344	821	44	306	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	FALSE	462	80	0	856	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCARB1--UBC	3	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	55	66	6	101	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSBP1--MGAM	3	0	SSBP1	9443	chr7:141450184:+	MGAM	20665	chr7:141705329:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	SSBP1->chr7:141438121-141487722:+,single_stranded_DNA_binding_protein_1,MGAM->chr7:141607613-141806547:+,maltase-glucoamylase	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	0	1	0	7	1	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	2	2	LINC00299	17125	chr2:8200478:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.016	0.016	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.032	TRUE	20	19	0	15	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTB--FKBP8	2	0	ACTB	4493	chr7:5570155:-	FKBP8	12949	chr19:18652805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx_v2:{count=3;pct=0.03%;dist=Esophagus_-_Muscularis=2,Whole_Blood=1},ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	1	0	2	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--RTKN2	2	0	CHD2	6529	chr15:93444529:+	RTKN2	73632	chr10:63959620:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,RTKN2->chr10:63942794-64028466:-,rhotekin_2	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.24	1	0.008	0.032	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.04	FALSE	125	705	46	456	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NTNG2--SETX	2	0	NTNG2	10949	chr9:135116891:+	SETX	31126	chr9:135187243:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	LOCAL_INVERSION:+:-:[16822],NTNG2->chr9:135037334-135119921:+,netrin_G2,SETX->chr9:135136743-135230372:-,senataxin	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-782C8.1--MYL12B	2	0	RP11-782C8.1	1059	chr1:143119119:+	MYL12B	14169	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	RP11-782C8.1->chr1:143119061-143233417:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.008	0.024	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.032	FALSE	0	23	1	67	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRSS57--PALM	1	2	PRSS57	1647	chr19:694814:-	PALM	12642	chr19:726138:+	ONLY_REF_SPLICE	NO	633	2	0	0.6	0.008	0.016	LOCAL_INVERSION:-:+:[13493],PRSS57->chr19:685521-695460:-,protease,_serine_57,PALM->chr19:708953-748329:+,paralemmin	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.6	0.024	FALSE	0	0	0	2	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--CKAP5	1	1	DANCR	1530	chr4:53579126:+	CKAP5	39344	chr11:46782334:-	ONLY_REF_SPLICE	YES	295	311	0.01	0.01	0.008	0.008	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	1	1	LINC00299	11974	chr2:8427468:-	AC007464.1	27081	chr2:8108410:-	ONLY_REF_SPLICE	NO	1	3	0.67	0.4	0.008	0.008	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.67	0.016	TRUE	2	0	0	3	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NBAS--FAM49A	1	1	NBAS	5992	chr2:15691617:-	FAM49A	68667	chr2:16747035:-	ONLY_REF_SPLICE	YES	42	9	0.05	0.18	0.008	0.008	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.18	0.016	TRUE	0	0	0	5	0	TRUE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	21	3	0.09	0.4	0.008	0.008	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.4	0.016	FALSE	8	57	1	47	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NSL1--PPP2R5A	1	1	NSL1	4740	chr1:212955714:-	PPP2R5A	21318	chr1:212502477:+	ONLY_REF_SPLICE	NO	62	53	0.03	0.04	0.008	0.008	NSL1->NSL1,_MIS12_kinetochore_complex_component,chr1:212899495-212965124:-,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.016	TRUE	0	0	0	1	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRSS57--PHF13	1	1	PRSS57	1647	chr19:694814:-	PHF13	9880	chr1:6676817:+	ONLY_REF_SPLICE	NO	633	10	0	0.17	0.008	0.008	PRSS57->chr19:685521-695460:-,protease,_serine_57,PHF13->PHD_finger_protein_13,chr1:6673745-6684093:+	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.17	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RHAG--CRISP3	1	1	RHAG	1184	chr6:49604369:-	CRISP3	15032	chr6:49705111:-	ONLY_REF_SPLICE	YES	3202	199	0	0.01	0.008	0.008	LOCAL_REARRANGEMENT:-:[90545],RHAG->Rh-associated_glycoprotein,chr6:49572871-49604552:-,CRISP3->chr6:49695097-49712150:-,cysteine_rich_secretory_protein_3	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SHKBP1--RPS21	1	1	SHKBP1	5578	chr19:41088372:+	RPS21	16150	chr20:60962374:+	ONLY_REF_SPLICE	YES	188	3	0.01	0.4	0.008	0.008	SHKBP1->SH3KBP1_binding_protein_1,chr19:41082757-41097305:+,RPS21->chr20:60962172-60963576:+,ribosomal_protein_S21	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.4	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SYAP1--PTBP3	1	1	SYAP1	1268	chrX:16738022:+	PTBP3	20597	chr9:115060196:-	ONLY_REF_SPLICE	YES	122	220	0.02	0.01	0.008	0.008	SYAP1->chrX:16737755-16783459:+,synapse_associated_protein_1,PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000076
NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWOX--RP11-319G9.5	1	1	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	29	0	0.06	1	0.008	0.008	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	NCO2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.016	FALSE	33	33	2	19	0	FALSE	ACH-000076
AU565_BREAST	TATDN1--GSDMB	1700	3	TATDN1	1434	chr8:125551266:-	GSDMB	23528	chr17:38066177:-	ONLY_REF_SPLICE	YES	1	39	1	0.98	17.7506	0.0313	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.98	1	17.7819	TRUE	0	1	0	3	1	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	525	1	TATDN1	1434	chr8:125551266:-	GSDMB	27467	chr17:38062238:-	ONLY_REF_SPLICE	YES	1	939	1	0.36	5.4818	0.0104	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.36	1	5.4922	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	485	2	TATDN1	1434	chr8:125551266:-	GSDMB	27181	chr17:38062524:-	ONLY_REF_SPLICE	YES	1	713	1	0.41	5.0641	0.0209	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.41	1	5.085	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	CYTH1--EIF3H	358	42	CYTH1	1096	chr17:76778284:-	EIF3H	28690	chr8:117768258:-	ONLY_REF_SPLICE	YES	3	0	0.99	1	3.7381	0.4385	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	AU565_BREAST	0.99	1	4.1766	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	272	39	TATDN1	1531	chr8:125551169:-	GSDMB	23528	chr17:38066177:-	ONLY_REF_SPLICE	YES	5	39	0.98	0.89	2.8401	0.4072	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.89	0.98	3.2473	TRUE	0	1	0	3	1	TRUE	ACH-000248
AU565_BREAST	CYTH1--EIF3H	129	19	CYTH1	1096	chr17:76778284:-	EIF3H	32173	chr8:117738411:-	ONLY_REF_SPLICE	YES	3	2052	0.98	0.07	1.347	0.1984	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	AU565_BREAST	0.07	0.98	1.5454	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	ANKHD1--PCDH1	118	27	ANKHD1	7029	chr5:139825560:+	PCDH1	56142	chr5:141234001:-	ONLY_REF_SPLICE	YES	148	14	0.49	0.91	1.2321	0.2819	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,PCDH1->chr5:141232938-141258811:-,protocadherin_1	AU565_BREAST	0.49	0.91	1.514	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TIMM23B--LINC00843	113	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1799	0.3028	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	AU565_BREAST	0.99	1	1.4827	TRUE	508	994	45	981	0	FALSE	ACH-000248
AU565_BREAST	PTK2--TRAPPC9	82	34	PTK2	2092	chr8:142011224:-	TRAPPC9	77038	chr8:141321473:-	ONLY_REF_SPLICE	YES	13	2	0.9	0.98	0.8562	0.355	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	AU565_BREAST	0.9	0.98	1.2112	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	SUMF1--LRRFIP2	72	27	SUMF1	8817	chr3:4418014:-	LRRFIP2	40265	chr3:37170640:-	ONLY_REF_SPLICE	YES	89	49	0.53	0.67	0.7518	0.2819	{Klijn_CCL:Breast=1},SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2	AU565_BREAST	0.53	0.67	1.0337	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	75	6	TATDN1	1531	chr8:125551169:-	GSDMB	27467	chr17:38062238:-	ONLY_REF_SPLICE	YES	5	939	0.94	0.08	0.7831	0.0626	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.08	0.94	0.8457	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TIMM23--RP11-464F9.1	69	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	241	5	0.23	0.94	0.7205	0.0522	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	AU565_BREAST	0.23	0.94	0.7727	TRUE	519	3926	326	965	0	FALSE	ACH-000248
AU565_BREAST	ACOT8--WASH3P	61	12	ACOT8	2353	chr20:44483798:-	WASH3P	13886	chr15:102506273:+	ONLY_REF_SPLICE	YES	124	3	0.37	0.96	0.6369	0.1253	ACOT8->acyl-CoA_thioesterase_8,chr20:44470360-44486045:-,WASH3P->WAS_protein_family_homolog_3_pseudogene,chr15:102501356-102516768:+	AU565_BREAST	0.37	0.96	0.7622	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	KLHDC2--SNTB1	55	19	KLHDC2	9999	chr14:50249312:+	SNTB1	23424	chr8:121561198:-	ONLY_REF_SPLICE	YES	159	106	0.32	0.41	0.5743	0.1984	KLHDC2->chr14:50234326-50249909:+,kelch_domain_containing_2,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	AU565_BREAST	0.32	0.41	0.7727	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	NCOA2--CALB1	53	19	NCOA2	1106	chr8:71315935:-	CALB1	39758	chr8:91094330:-	ONLY_REF_SPLICE	YES	4	8	0.95	0.9	0.5534	0.1984	NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,CALB1->calbindin_1,chr8:91070836-91107703:-	AU565_BREAST	0.9	0.95	0.7518	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	52	14	TATDN1	1531	chr8:125551169:-	GSDMB	27181	chr17:38062524:-	ONLY_REF_SPLICE	YES	5	713	0.93	0.08	0.543	0.1462	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.08	0.93	0.6892	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	OR51S1--TP53I11	51	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5325	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	AU565_BREAST	1	1	0.5325	TRUE	402	216	10	229	0	FALSE	ACH-000248
AU565_BREAST	MT-TA--MT-TC	45	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4699	0.0418	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	AU565_BREAST	1	1	0.5117	FALSE	462	80	0	856	0	FALSE	ACH-000248
AU565_BREAST	FOXK2--NARF	44	4	FOXK2	15124	chr17:80554067:+	NARF	30519	chr17:80426640:+	ONLY_REF_SPLICE	YES	103	82	0.32	0.37	0.4594	0.0418	LOCAL_REARRANGEMENT:+:[29176],FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,NARF->chr17:80416056-80448413:+,nuclear_prelamin_A_recognition_factor	AU565_BREAST	0.32	0.37	0.5012	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	RP11-123O10.4--GRIP1	44	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4594	0.0418	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	AU565_BREAST	1	1	0.5012	FALSE	416	2512	207	587	0	FALSE	ACH-000248
AU565_BREAST	CYTH1--EIF3H	36	32	CYTH1	1096	chr17:76778284:-	EIF3H	28912	chr8:117768036:-	ONLY_REF_SPLICE	YES	3	2	0.96	0.97	0.3759	0.3341	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	AU565_BREAST	0.96	0.97	0.71	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	CYTH1--EIF3H	34	11	CYTH1	1096	chr17:76778284:-	EIF3H	35587	chr8:117671219:-	ONLY_REF_SPLICE	YES	3	2522	0.94	0.02	0.355	0.1149	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	AU565_BREAST	0.02	0.94	0.4699	TRUE	0	0	0	2	0	FALSE	ACH-000248
AU565_BREAST	TAF2--COLEC10	33	9	TAF2	9798	chr8:120807772:-	COLEC10	41258	chr8:120114587:+	ONLY_REF_SPLICE	YES	90	2	0.32	0.95	0.3446	0.094	TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-,COLEC10->chr8:120007691-120118821:+,collectin_subfamily_member_10	AU565_BREAST	0.32	0.95	0.4386	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	MIPEPP3--ABHD12	35	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3655	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	AU565_BREAST	1	1	0.3655	TRUE	64	202	9	44	0	FALSE	ACH-000248
AU565_BREAST	PREX1--CPNE1	31	11	PREX1	2314	chr20:47364346:-	CPNE1	53305	chr20:34215335:-	ONLY_REF_SPLICE	YES	65	145	0.39	0.22	0.3237	0.1149	GTEx&tcga_normals:1/3694=0.03%,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1,CPNE1->chr20:34213953-34252878:-,copine_1	AU565_BREAST	0.22	0.39	0.4386	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	DHX35--ITCH	30	12	DHX35	2243	chr20:37597857:+	ITCH	30373	chr20:32957200:+	ONLY_REF_SPLICE	YES	19	2	0.69	0.95	0.3132	0.1253	DHX35->DEAH-box_helicase_35,chr20:37590942-37668366:+,ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase	AU565_BREAST	0.69	0.95	0.4385	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	MT-ND6--MT-TE	31	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3237	0.0522	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AU565_BREAST	1	1	0.3759	FALSE	499	1288	110	792	0	FALSE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	30	2	TATDN1	1434	chr8:125551266:-	GSDMB	26465	chr17:38063240:-	ONLY_REF_SPLICE	YES	1	708	0.97	0.04	0.3132	0.0209	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.04	0.97	0.3341	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TBC1D31--ZNF704	25	15	TBC1D31	8244	chr8:124096580:+	ZNF704	36178	chr8:81733850:-	ONLY_REF_SPLICE	YES	100	88	0.29	0.31	0.261	0.1566	TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+,ZNF704->chr8:81540686-81787016:-,zinc_finger_protein_704	AU565_BREAST	0.29	0.31	0.4176	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	PTK2--TRAPPC9	17	40	PTK2	5802	chr8:141958765:-	TRAPPC9	77038	chr8:141321473:-	ONLY_REF_SPLICE	YES	17	2	0.77	0.97	0.1775	0.4177	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	AU565_BREAST	0.77	0.97	0.5952	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	ATAD5--TLK2	24	8	ATAD5	20714	chr17:29206505:+	TLK2	48337	chr17:60650576:+	ONLY_REF_SPLICE	YES	8	30	0.8	0.52	0.2506	0.0835	ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+,TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2	AU565_BREAST	0.52	0.8	0.3341	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TRIO--FBXL7	20	7	TRIO	38970	chr5:14420130:+	FBXL7	77700	chr5:15616092:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.2088	0.0731	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,FBXL7->F-box_and_leucine-rich_repeat_protein_7,Oncogene{Bushman},chr5:15500305-15939900:+	AU565_BREAST	0.96	1	0.2819	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	RARA--PKIA	20	2	RARA	1095	chr17:38465538:+	PKIA	21989	chr8:79485046:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.2088	0.0209	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,PKIA->chr8:79428374-79517502:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_alpha	AU565_BREAST	0.96	1	0.2297	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	SLC45A4--RP11-89M16.1	20	1	SLC45A4	2851	chr8:142264088:-	RP11-89M16.1	25605	chr8:129440630:-	ONLY_REF_SPLICE	YES	7	0	0.75	1	0.2088	0.0104	SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4,RP11-89M16.1->chr8:129417515-129576925:-	AU565_BREAST	0.75	1	0.2192	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	MT-ND6--MT-TE	17	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.1775	0.1253	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AU565_BREAST	0.94	1	0.3028	FALSE	499	1288	110	792	0	FALSE	ACH-000248
AU565_BREAST	SAMD12--MRPL13	12	27	SAMD12	3503	chr8:119452071:-	MRPL13	22212	chr8:121455548:-	ONLY_REF_SPLICE	YES	31	41	0.56	0.49	0.1253	0.2819	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	AU565_BREAST	0.49	0.56	0.4072	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	HSP90AB1--MT-RNR2	17	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2528	0	0.01	1	0.1775	0.0209	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	AU565_BREAST	0.01	1	0.1984	FALSE	13	9	0	364	0	FALSE	ACH-000248
AU565_BREAST	MT-ND4--MT-ATP8	17	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1775	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AU565_BREAST	1	1	0.1775	FALSE	230	193	14	283	0	FALSE	ACH-000248
AU565_BREAST	PVT1--LINC00536	13	14	PVT1	20335	chr8:129082518:+	LINC00536	36325	chr8:116989661:-	ONLY_REF_SPLICE	YES	11	1	0.71	0.96	0.1357	0.1462	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	AU565_BREAST	0.71	0.96	0.2819	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	SAMD12--MRPL13	13	13	SAMD12	3503	chr8:119452071:-	MRPL13	23336	chr8:121444363:-	ONLY_REF_SPLICE	YES	31	1132	0.46	0.02	0.1357	0.1357	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	AU565_BREAST	0.02	0.46	0.2714	TRUE	0	0	0	2	0	FALSE	ACH-000248
AU565_BREAST	NIPA2--POLA1	16	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1671	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	AU565_BREAST	1	1	0.1671	TRUE	46	1352	75	139	0	FALSE	ACH-000248
AU565_BREAST	NPM1P24--SET	15	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1566	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	AU565_BREAST	1	1	0.1566	TRUE	0	0	0	434	0	FALSE	ACH-000248
AU565_BREAST	PBRM1--WDR82	14	3	PBRM1	6967	chr3:52702514:-	WDR82	48674	chr3:52304825:-	ONLY_REF_SPLICE	YES	17	23	0.5	0.42	0.1462	0.0313	PBRM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:52579368-52719933:-,polybromo_1,WDR82->Oncogene{Bushman},WD_repeat_domain_82,chr3:52288437-52322036:-	AU565_BREAST	0.42	0.5	0.1775	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	SAMD12--MRPL13	8	27	SAMD12	3508	chr8:119452066:-	MRPL13	22212	chr8:121455548:-	INCL_NON_REF_SPLICE	YES	34	41	0.51	0.46	0.0835	0.2819	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	AU565_BREAST	0.46	0.51	0.3654	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	VSTM2L--CTNNBL1	13	6	VSTM2L	3596	chr20:36561991:+	CTNNBL1	32009	chr20:36488301:+	ONLY_REF_SPLICE	YES	92	96	0.17	0.17	0.1357	0.0626	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[30968],VSTM2L->V-set_and_transmembrane_domain_containing_2_like,chr20:36531499-36573752:+,CTNNBL1->catenin_beta_like_1,chr20:36322408-36500531:+	AU565_BREAST	0.17	0.17	0.1983	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	9	21	TATDN1	1531	chr8:125551169:-	GSDMB	24410	chr17:38065295:-	ONLY_REF_SPLICE	YES	5	385	0.86	0.07	0.094	0.2193	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.07	0.86	0.3133	TRUE	0	1	0	3	1	TRUE	ACH-000248
AU565_BREAST	MT-ND4--MT-ATP8	14	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1462	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AU565_BREAST	1	1	0.1462	FALSE	231	205	14	283	0	FALSE	ACH-000248
AU565_BREAST	MT-ND6--MT-TE	13	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1357	0.0418	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AU565_BREAST	1	1	0.1775	FALSE	499	1288	110	792	0	FALSE	ACH-000248
AU565_BREAST	MTMR3--UQCR10	12	8	MTMR3	1205	chr22:30279348:+	UQCR10	33872	chr22:30165667:+	ONLY_REF_SPLICE	YES	27	852	0.43	0.02	0.1253	0.0835	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	AU565_BREAST	0.02	0.43	0.2088	TRUE	0	0	0	1	0	FALSE	ACH-000248
AU565_BREAST	C15orf57--CBX3	12	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	41	37	0.32	0.34	0.1253	0.0731	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	AU565_BREAST	0.32	0.34	0.1984	TRUE	267	562	48	632	0	FALSE	ACH-000248
AU565_BREAST	SAMD12--MRPL13	10	14	SAMD12	2373	chr8:119592954:-	MRPL13	22212	chr8:121455548:-	ONLY_REF_SPLICE	YES	42	41	0.36	0.37	0.1044	0.1462	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	AU565_BREAST	0.36	0.37	0.2506	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	3	39	TATDN1	2128	chr8:125550572:-	GSDMB	23528	chr17:38066177:-	ONLY_REF_SPLICE	YES	5	39	0.89	0.52	0.0313	0.4072	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.52	0.89	0.4385	TRUE	0	1	0	3	1	TRUE	ACH-000248
AU565_BREAST	PVT1--LINC00536	10	10	PVT1	18060	chr8:129022690:+	LINC00536	36325	chr8:116989661:-	ONLY_REF_SPLICE	YES	13	1	0.61	0.95	0.1044	0.1044	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	AU565_BREAST	0.61	0.95	0.2088	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	FASN--MT-ND2	12	1	FASN	17402	chr17:80038591:-	MT-ND2	23619	chrM:5309:+	INCL_NON_REF_SPLICE	YES	1530	3341	0.01	0	0.1253	0.0104	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	AU565_BREAST	0	0.01	0.1357	FALSE	5	0	0	5	0	FALSE	ACH-000248
AU565_BREAST	CYTH1--EIF3H	11	4	CYTH1	1096	chr17:76778284:-	EIF3H	38353	chr8:117668244:-	ONLY_REF_SPLICE	YES	3	1893	0.83	0.01	0.1149	0.0418	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	AU565_BREAST	0.01	0.83	0.1567	TRUE	0	0	0	2	0	FALSE	ACH-000248
AU565_BREAST	PREX1--CPNE1	11	3	PREX1	2314	chr20:47364346:-	CPNE1	53915	chr20:34214725:-	ONLY_REF_SPLICE	YES	65	180	0.18	0.07	0.1149	0.0313	GTEx&tcga_normals:1/3694=0.03%,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1,CPNE1->chr20:34213953-34252878:-,copine_1	AU565_BREAST	0.07	0.18	0.1462	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	MT-ND6--MT-TE	7	18	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0731	0.1879	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AU565_BREAST	1	1	0.261	FALSE	499	1288	110	792	0	FALSE	ACH-000248
AU565_BREAST	MT-TA--MT-TC	10	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1044	0.0522	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	AU565_BREAST	1	1	0.1566	FALSE	462	80	0	856	0	FALSE	ACH-000248
AU565_BREAST	AC104389.28--HBG1	11	0	AC104389.28	1084	chr11:5526799:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1149	0	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	AU565_BREAST	1	1	0.1149	FALSE	0	1	0	13	0	FALSE	ACH-000248
AU565_BREAST	PTK2--TRAPPC9	2	34	PTK2	2337	chr8:142010979:-	TRAPPC9	77038	chr8:141321473:-	ONLY_REF_SPLICE	YES	20	2	0.64	0.95	0.0209	0.355	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	AU565_BREAST	0.64	0.95	0.3759	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	FOXK2--NARF	10	1	FOXK2	11869	chr17:80545148:+	NARF	30519	chr17:80426640:+	ONLY_REF_SPLICE	YES	112	82	0.09	0.12	0.1044	0.0104	LOCAL_REARRANGEMENT:+:[29176],FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,NARF->chr17:80416056-80448413:+,nuclear_prelamin_A_recognition_factor	AU565_BREAST	0.09	0.12	0.1148	TRUE	0	0	0	1	0	FALSE	ACH-000248
AU565_BREAST	MTSS1--RP11-941H19.3	9	3	MTSS1	12346	chr8:125592792:-	RP11-941H19.3	31995	chr8:81201052:+	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.094	0.0313	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,RP11-941H19.3->chr8:81178389-81252075:+	AU565_BREAST	0.75	1	0.1253	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	MSL1--MED24	8	6	MSL1	2083	chr17:38279633:+	MED24	21261	chr17:38192407:-	ONLY_REF_SPLICE	YES	747	574	0.02	0.02	0.0835	0.0626	LOCAL_INVERSION:+:-:[61083],MSL1->chr17:38278551-38293042:+,male_specific_lethal_1_homolog,MED24->chr17:38175350-38217468:-,mediator_complex_subunit_24	AU565_BREAST	0.02	0.02	0.1461	TRUE	0	0	0	1	0	FALSE	ACH-000248
AU565_BREAST	CTC-559E9.6--MTSS1	9	1	CTC-559E9.6	1393	chr19:19887803:+	MTSS1	18871	chr8:125603476:-	ONLY_REF_SPLICE	YES	0	5	1	0.67	0.094	0.0104	CTC-559E9.6->chr19:19887411-19945736:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	AU565_BREAST	0.67	1	0.1044	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	SLC1A5--MT-ND4L	8	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	829	0	0.01	1	0.0835	0.0209	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	AU565_BREAST	0.01	1	0.1044	FALSE	0	0	0	189	0	FALSE	ACH-000248
AU565_BREAST	AC104389.28--HBG1	7	5	AC104389.28	3440	chr11:5367003:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	1	1	0.92	0.92	0.0731	0.0522	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	AU565_BREAST	0.92	0.92	0.1253	FALSE	0	0	0	7	0	FALSE	ACH-000248
AU565_BREAST	SUMF1--LRRFIP2	5	13	SUMF1	7757	chr3:4452549:-	LRRFIP2	40265	chr3:37170640:-	ONLY_REF_SPLICE	YES	92	49	0.16	0.27	0.0522	0.1357	{Klijn_CCL:Breast=1},SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2	AU565_BREAST	0.16	0.27	0.1879	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	RP11-680G10.1--GSE1	8	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0835	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	AU565_BREAST	1	1	0.0835	TRUE	465	1949	224	605	0	FALSE	ACH-000248
AU565_BREAST	ANKHD1--PCDH1	1	27	ANKHD1	7029	chr5:139825560:+	PCDH1	55103	chr5:141235827:-	ONLY_REF_SPLICE	NO	148	14	0.16	0.67	0.0104	0.2819	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,PCDH1->chr5:141232938-141258811:-,protocadherin_1	AU565_BREAST	0.16	0.67	0.2923	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	VSTM2L--CTNNBL1	6	6	VSTM2L	2545	chr20:36560206:+	CTNNBL1	32009	chr20:36488301:+	ONLY_REF_SPLICE	YES	117	96	0.09	0.11	0.0626	0.0626	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[30968],VSTM2L->V-set_and_transmembrane_domain_containing_2_like,chr20:36531499-36573752:+,CTNNBL1->catenin_beta_like_1,chr20:36322408-36500531:+	AU565_BREAST	0.09	0.11	0.1252	TRUE	0	0	0	2	0	FALSE	ACH-000248
AU565_BREAST	MT-ATP6--MT-CO1	7	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7973	21189	0	0	0.0731	0.0104	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AU565_BREAST	0	0	0.0835	FALSE	183	104	9	328	0	FALSE	ACH-000248
AU565_BREAST	SCARB1--UBC	7	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	375	28	0.02	0.22	0.0731	0.0104	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	AU565_BREAST	0.02	0.22	0.0835	TRUE	55	66	6	101	0	FALSE	ACH-000248
AU565_BREAST	CTC-559E9.6--MTSS1	6	3	CTC-559E9.6	4541	chr19:19900630:+	MTSS1	18871	chr8:125603476:-	ONLY_REF_SPLICE	YES	0	5	1	0.64	0.0626	0.0313	CTC-559E9.6->chr19:19887411-19945736:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	AU565_BREAST	0.64	1	0.0939	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	NRIP1--AF127936.7	6	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.64	1	0.0626	0.0313	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	AU565_BREAST	0.64	1	0.0939	FALSE	292	1546	117	613	0	FALSE	ACH-000248
AU565_BREAST	NRIP1--AF127936.7	6	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.56	1	0.0626	0.0313	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	AU565_BREAST	0.56	1	0.0939	FALSE	125	705	46	456	0	FALSE	ACH-000248
AU565_BREAST	MT-ATP6--MT-CO1	6	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8199	21360	0	0	0.0626	0.0104	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AU565_BREAST	0	0	0.073	FALSE	183	104	9	328	0	FALSE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	6	1	TATDN1	1434	chr8:125551266:-	GSDMB	27956	chr17:38061749:-	ONLY_REF_SPLICE	YES	1	1129	0.88	0.01	0.0626	0.0104	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.01	0.88	0.073	FALSE	0	0	0	2	0	FALSE	ACH-000248
AU565_BREAST	MT-ND4--MT-ATP8	6	0	MT-ND4	2053	chrM:11812:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0626	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AU565_BREAST	1	1	0.0626	FALSE	231	215	16	283	0	FALSE	ACH-000248
AU565_BREAST	MT-ND4--MT-ATP8	6	0	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0626	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AU565_BREAST	1	1	0.0626	FALSE	231	217	16	283	0	FALSE	ACH-000248
AU565_BREAST	PVT1--LINC00536	4	8	PVT1	13955	chr8:129001537:+	LINC00536	36325	chr8:116989661:-	ONLY_REF_SPLICE	YES	14	1	0.46	0.92	0.0418	0.0835	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	AU565_BREAST	0.46	0.92	0.1253	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	PVT1--LINC00536	2	16	PVT1	20424	chr8:129082607:+	LINC00536	36325	chr8:116989661:-	ONLY_REF_SPLICE	YES	11	1	0.62	0.95	0.0209	0.1671	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	AU565_BREAST	0.62	0.95	0.188	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	MTSS1--RP11-941H19.3	5	3	MTSS1	11334	chr8:125597328:-	RP11-941H19.3	31995	chr8:81201052:+	ONLY_REF_SPLICE	YES	4	0	0.67	1	0.0522	0.0313	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,RP11-941H19.3->chr8:81178389-81252075:+	AU565_BREAST	0.67	1	0.0835	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	5	3	TATDN1	1434	chr8:125551266:-	GSDMB	24410	chr17:38065295:-	ONLY_REF_SPLICE	YES	1	385	0.89	0.02	0.0522	0.0313	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.02	0.89	0.0835	TRUE	0	1	0	3	1	FALSE	ACH-000248
AU565_BREAST	C15orf57--CBX3	5	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	41	37	0.15	0.16	0.0522	0.0209	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	AU565_BREAST	0.15	0.16	0.0731	TRUE	267	562	48	632	0	FALSE	ACH-000248
AU565_BREAST	TAF2--COLEC10	3	10	TAF2	10884	chr8:120805606:-	COLEC10	41258	chr8:120114587:+	ONLY_REF_SPLICE	YES	85	2	0.13	0.87	0.0313	0.1044	TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-,COLEC10->chr8:120007691-120118821:+,collectin_subfamily_member_10	AU565_BREAST	0.13	0.87	0.1357	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	2	14	TATDN1	1531	chr8:125551169:-	GSDMB	26465	chr17:38063240:-	ONLY_REF_SPLICE	YES	5	708	0.76	0.02	0.0209	0.1462	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.02	0.76	0.1671	TRUE	0	0	0	2	0	FALSE	ACH-000248
AU565_BREAST	RP11-680G10.1--GSE1	5	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	36	1	0.14	0.0522	0.0104	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	AU565_BREAST	0.14	1	0.0626	TRUE	458	1351	185	561	0	FALSE	ACH-000248
AU565_BREAST	EIF1--RPL5	5	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	AU565_BREAST	1	1	0.0522	TRUE	0	0	0	39	0	FALSE	ACH-000248
AU565_BREAST	ERBB2--MT-ND2	5	0	ERBB2	11916	chr17:37866454:+	MT-ND2	30927	chrM:5227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	AU565_BREAST	1	1	0.0522	FALSE	0	0	0	2	0	FALSE	ACH-000248
AU565_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AU565_BREAST	1	1	0.0522	FALSE	230	198	14	283	0	FALSE	ACH-000248
AU565_BREAST	MT-ATP6--MT-CO1	3	7	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	NO	4930	19107	0	0	0.0313	0.0731	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AU565_BREAST	0	0	0.1044	FALSE	183	104	9	328	0	FALSE	ACH-000248
AU565_BREAST	MT-ND6--MT-TE	4	3	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0.0313	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AU565_BREAST	1	1	0.0731	FALSE	499	1288	110	792	0	FALSE	ACH-000248
AU565_BREAST	RPTOR--RNF213	4	3	RPTOR	12519	chr17:78765309:+	RNF213	70443	chr17:78298830:+	ONLY_REF_SPLICE	YES	33	53	0.17	0.12	0.0418	0.0313	GTEx&tcga_normals:1/3694=0.03%,RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1,RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213	AU565_BREAST	0.12	0.17	0.0731	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	BLOC1S6--AKAP13	3	6	BLOC1S6	2907	chr15:45884474:+	AKAP13	40961	chr15:86182605:+	ONLY_REF_SPLICE	YES	53	27	0.15	0.25	0.0313	0.0626	BLOC1S6->biogenesis_of_lysosomal_organelles_complex_1_subunit_6,chr15:45879321-45908197:+,AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+	AU565_BREAST	0.15	0.25	0.0939	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	CMTM8--CMTM7	4	2	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	119	0	0.05	1	0.0418	0.0209	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	AU565_BREAST	0.05	1	0.0627	FALSE	118	557	29	88	0	FALSE	ACH-000248
AU565_BREAST	JSRP1--RPS28	4	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0418	0.0209	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	AU565_BREAST	0.86	1	0.0627	TRUE	0	1	0	84	1	FALSE	ACH-000248
AU565_BREAST	PTK2--TRAPPC9	3	6	PTK2	2092	chr8:142011224:-	TRAPPC9	79316	chr8:141310713:-	ONLY_REF_SPLICE	YES	13	24	0.41	0.27	0.0313	0.0626	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	AU565_BREAST	0.27	0.41	0.0939	TRUE	0	1	0	1	1	TRUE	ACH-000248
AU565_BREAST	RARA--PKIA	4	2	RARA	1095	chr17:38465538:+	PKIA	24171	chr8:79510593:+	ONLY_REF_SPLICE	YES	1	3	0.86	0.67	0.0418	0.0209	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,PKIA->chr8:79428374-79517502:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_alpha	AU565_BREAST	0.67	0.86	0.0627	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	4	2	TATDN1	1434	chr8:125551266:-	GSDMB	27158	chr17:38062547:-	INCL_NON_REF_SPLICE	YES	1	812	0.86	0.01	0.0418	0.0209	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.01	0.86	0.0627	FALSE	0	0	0	2	0	FALSE	ACH-000248
AU565_BREAST	BLOC1S6--AKAP13	3	5	BLOC1S6	1403	chr15:45879723:+	AKAP13	40961	chr15:86182605:+	ONLY_REF_SPLICE	YES	43	27	0.16	0.23	0.0313	0.0522	BLOC1S6->biogenesis_of_lysosomal_organelles_complex_1_subunit_6,chr15:45879321-45908197:+,AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+	AU565_BREAST	0.16	0.23	0.0835	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	HSP90AB1--MT-RNR2	4	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2514	0	0	1	0.0418	0.0104	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	AU565_BREAST	0	1	0.0522	FALSE	13	9	0	364	0	FALSE	ACH-000248
AU565_BREAST	MT-ATP6--MT-CO1	4	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	8104	20845	0	0	0.0418	0.0104	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AU565_BREAST	0	0	0.0522	FALSE	183	104	9	328	0	FALSE	ACH-000248
AU565_BREAST	TATDN1--GSDMB	3	3	TATDN1	1434	chr8:125551266:-	GSDMB	25238	chr17:38064467:-	ONLY_REF_SPLICE	YES	1	541	0.86	0.01	0.0313	0.0313	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	AU565_BREAST	0.01	0.86	0.0626	FALSE	0	0	0	2	0	FALSE	ACH-000248
AU565_BREAST	JSRP1--RPS28	3	2	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0313	0.0209	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	AU565_BREAST	0.83	1	0.0522	TRUE	0	1	0	84	1	FALSE	ACH-000248
AU565_BREAST	MT-ATP6--MT-CO1	3	2	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	8814	0	0	1	0.0313	0.0209	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AU565_BREAST	0	1	0.0522	FALSE	182	97	9	327	0	FALSE	ACH-000248
AU565_BREAST	NARS--KIAA0391	3	2	NARS	12251	chr18:55268942:-	KIAA0391	22881	chr14:35735958:+	INCL_NON_REF_SPLICE	YES	307	119	0.02	0.04	0.0313	0.0209	NARS->asparaginyl-tRNA_synthetase,chr18:55267888-55289445:-,KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+	AU565_BREAST	0.02	0.04	0.0522	TRUE	0	0	0	1	0	FALSE	ACH-000248
AU565_BREAST	SAMD12--MRPL13	3	2	SAMD12	2373	chr8:119592954:-	MRPL13	24430	chr8:121437606:-	ONLY_REF_SPLICE	YES	42	1078	0.11	0	0.0313	0.0209	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	AU565_BREAST	0	0.11	0.0522	FALSE	0	0	0	1	0	FALSE	ACH-000248
AU565_BREAST	SUMF1--LRRFIP2	2	6	SUMF1	8817	chr3:4418014:-	LRRFIP2	52453	chr3:37138151:-	ONLY_REF_SPLICE	YES	89	81	0.08	0.09	0.0209	0.0626	{Klijn_CCL:Breast=1},SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2	AU565_BREAST	0.08	0.09	0.0835	TRUE	0	0	0	1	0	FALSE	ACH-000248
AU565_BREAST	TBC1D31--ZNF704	3	2	TBC1D31	5411	chr8:124089497:+	ZNF704	36178	chr8:81733850:-	ONLY_REF_SPLICE	YES	91	88	0.05	0.05	0.0313	0.0209	TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+,ZNF704->chr8:81540686-81787016:-,zinc_finger_protein_704	AU565_BREAST	0.05	0.05	0.0522	TRUE	0	0	0	1	0	FALSE	ACH-000248
AU565_BREAST	ATAD5--TLK2	2	5	ATAD5	19649	chr17:29205114:+	TLK2	48337	chr17:60650576:+	ONLY_REF_SPLICE	YES	9	30	0.44	0.19	0.0209	0.0522	ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+,TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2	AU565_BREAST	0.19	0.44	0.0731	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	CTC-559E9.6--MTSS1	3	1	CTC-559E9.6	2476	chr19:19897500:+	MTSS1	18871	chr8:125603476:-	ONLY_REF_SPLICE	YES	3	5	0.57	0.44	0.0313	0.0104	CTC-559E9.6->chr19:19887411-19945736:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	AU565_BREAST	0.44	0.57	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	ERBB2--RAD23B	3	1	ERBB2	24625	chr17:37883775:+	RAD23B	35215	chr9:110068766:+	INCL_NON_REF_SPLICE	YES	5648	555	0	0.01	0.0313	0.0104	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,RAD23B->Oncogene{Bushman},RAD23_homolog_B,_nucleotide_excision_repair_protein,chr9:110045418-110094475:+	AU565_BREAST	0	0.01	0.0417	FALSE	0	0	0	1	0	FALSE	ACH-000248
AU565_BREAST	MT-ND4--MT-ATP8	3	1	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	3921	0	0	1	0.0313	0.0104	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AU565_BREAST	0	1	0.0417	FALSE	222	212	16	282	0	FALSE	ACH-000248
AU565_BREAST	TXNRD1--NFYB	3	1	TXNRD1	11664	chr12:104682818:+	NFYB	36515	chr12:104529310:-	ONLY_REF_SPLICE	YES	1291	111	0	0.03	0.0313	0.0104	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:+:-:[77490],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	AU565_BREAST	0	0.03	0.0417	FALSE	0	0	0	6	0	FALSE	ACH-000248
AU565_BREAST	AGK--NDUFB2	3	0	AGK	2361	chr7:141255367:+	NDUFB2	34277	chr7:140402666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	GTEx_FI:{Esophagus=[count:1=pct:0.2],Thyroid=[count:1=pct:0.6]},{Klijn_CCL:Lung=1,Ovary=1},AGK->acylglycerol_kinase,chr7:141250989-141355044:+,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	AU565_BREAST	1	1	0.0313	TRUE	1	5	0	3	1	TRUE	ACH-000248
AU565_BREAST	CPSF6--RAB3IP	3	0	CPSF6	1170	chr12:69633486:+	RAB3IP	22085	chr12:70149164:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	AU565_BREAST	1	1	0.0313	TRUE	0	0	0	3	0	TRUE	ACH-000248
AU565_BREAST	GATS--PILRB	3	0	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	AU565_BREAST	1	1	0.0313	TRUE	57	41	2	35	0	FALSE	ACH-000248
AU565_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AU565_BREAST	1	1	0.0313	FALSE	231	205	14	283	0	FALSE	ACH-000248
AU565_BREAST	PLCD4--CXCR2	3	0	PLCD4	4266	chr2:219480682:+	CXCR2	21675	chr2:218991014:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	PLCD4->chr2:219472488-219501907:+,phospholipase_C_delta_4,CXCR2->C-X-C_motif_chemokine_receptor_2,chr2:218990012-219001976:+	AU565_BREAST	1	1	0.0313	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	SAMD12--MRPL13	1	7	SAMD12	3503	chr8:119452071:-	MRPL13	24430	chr8:121437606:-	ONLY_REF_SPLICE	YES	31	1078	0.21	0.01	0.0104	0.0731	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	AU565_BREAST	0.01	0.21	0.0835	FALSE	0	0	0	2	0	FALSE	ACH-000248
AU565_BREAST	SUMF1--LRRFIP2	1	7	SUMF1	8817	chr3:4418014:-	LRRFIP2	42403	chr3:37163182:-	ONLY_REF_SPLICE	NO	89	74	0.08	0.1	0.0104	0.0731	{Klijn_CCL:Breast=1},SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2	AU565_BREAST	0.08	0.1	0.0835	TRUE	0	0	0	1	0	FALSE	ACH-000248
AU565_BREAST	HIF1A--PRKCH	2	1	HIF1A	1327	chr14:62162557:+	PRKCH	48659	chr14:61952220:+	ONLY_REF_SPLICE	YES	304	100	0.01	0.03	0.0209	0.0104	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	AU565_BREAST	0.01	0.03	0.0313	FALSE	1	15	1	9	1	FALSE	ACH-000248
AU565_BREAST	MAL2--TAF2	2	1	MAL2	5558	chr8:120233997:+	TAF2	19813	chr8:120810086:-	ONLY_REF_SPLICE	YES	2764	110	0	0.03	0.0209	0.0104	MAL2->chr8:120177273-120257913:+,mal,_T-cell_differentiation_protein_2_(gene/pseudogene),TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-	AU565_BREAST	0	0.03	0.0313	FALSE	0	0	0	1	0	FALSE	ACH-000248
AU565_BREAST	NRIP1--AF127936.7	1	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	11	0	0.35	1	0.0104	0.0522	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	AU565_BREAST	0.35	1	0.0626	FALSE	164	806	69	479	0	FALSE	ACH-000248
AU565_BREAST	PLCD4--CXCR2	2	1	PLCD4	4369	chr2:219480785:+	CXCR2	21675	chr2:218991014:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0209	0.0104	PLCD4->chr2:219472488-219501907:+,phospholipase_C_delta_4,CXCR2->C-X-C_motif_chemokine_receptor_2,chr2:218990012-219001976:+	AU565_BREAST	0.6	1	0.0313	TRUE	0	0	0	2	0	TRUE	ACH-000248
AU565_BREAST	ACLY--KRT19	2	0	ACLY	21602	chr17:40039375:-	KRT19	35735	chr17:39681525:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ACLY->ATP_citrate_lyase,chr17:40023161-40086795:-,KRT19->chr17:39679869-39684560:-,keratin_19	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	ATR--U2SURP	2	0	ATR	3414	chr3:142284963:-	U2SURP	75627	chr3:142751626:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Vagina=1},ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	AU565_BREAST	1	1	0.0209	TRUE	0	10	0	10	7	TRUE	ACH-000248
AU565_BREAST	BCLAF1--MAP7	2	0	BCLAF1	1139	chr6:136610851:-	MAP7	27840	chr6:136742937:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	LOCAL_REARRANGEMENT:-:[52886],BCLAF1->BCL2_associated_transcription_factor_1,chr6:136578001-136610989:-,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	C1orf132--CD46	2	0	C1orf132	2221	chr1:208041271:-	CD46	25901	chr1:207930359:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	LOCAL_INVERSION:-:+:[6005],C1orf132->chr1:207974863-208042495:-,chromosome_1_open_reading_frame_132,CD46->CD46_molecule,Oncogene{Bushman},chr1:207925402-207968858:+	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	47891	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	AU565_BREAST	1	1	0.0209	TRUE	1	3	0	10	0	FALSE	ACH-000248
AU565_BREAST	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	AU565_BREAST	1	1	0.0209	TRUE	2	8	0	24	0	FALSE	ACH-000248
AU565_BREAST	HP1BP3--EIF4G3	2	0	HP1BP3	1129	chr1:21113688:-	EIF4G3	28440	chr1:21415706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	AU565_BREAST	1	1	0.0209	TRUE	0	2	0	6	0	TRUE	ACH-000248
AU565_BREAST	KIAA1731--NCL	2	0	KIAA1731	21008	chr11:93454578:+	NCL	43393	chr2:232320335:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	KIAA1731->chr11:93394805-93463522:+,NCL->chr2:232318242-232348352:-,nucleolin	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	LYPLAL1--RRP15	2	0	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	AU565_BREAST	1	1	0.0209	TRUE	0	12	0	13	2	TRUE	ACH-000248
AU565_BREAST	MCF2L--CARS2	2	0	MCF2L	1054	chr13:113548745:+	CARS2	86265	chr13:111296830:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,CARS2->chr13:111293759-111365950:-,cysteinyl-tRNA_synthetase_2,_mitochondrial_(putative)	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	AU565_BREAST	1	1	0.0209	TRUE	1	10	0	18	0	TRUE	ACH-000248
AU565_BREAST	RHOA--DAG1	2	0	RHOA	2179	chr3:49449253:-	DAG1	21789	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[55715],RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,DAG1->chr3:49506146-49573048:+,dystroglycan_1	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	8	0	TRUE	ACH-000248
AU565_BREAST	VEZT--METAP2	2	0	VEZT	1141	chr12:95611662:+	METAP2	38328	chr12:95887832:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	VEZT->chr12:95611522-95696566:+,vezatin,_adherens_junctions_transmembrane_protein,METAP2->Oncogene{Bushman},chr12:95867296-95909615:+,methionyl_aminopeptidase_2	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	ZNF704--TBC1D31	2	0	ZNF704	3480	chr8:81733609:-	TBC1D31	35932	chr8:124089351:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ZNF704->chr8:81540686-81787016:-,zinc_finger_protein_704,TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	ZZZ3--GNAS	2	0	ZZZ3	1158	chr1:78148947:-	GNAS	40363	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ZZZ3->chr1:78028101-78149104:-,zinc_finger_ZZ-type_containing_3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	AU565_BREAST	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000248
AU565_BREAST	SAMD12--MRPL13	1	3	SAMD12	1192	chr8:119634043:-	MRPL13	23336	chr8:121444363:-	ONLY_REF_SPLICE	YES	25	1132	0.14	0	0.0104	0.0313	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	AU565_BREAST	0	0.14	0.0417	FALSE	0	0	0	1	0	FALSE	ACH-000248
AU565_BREAST	ADAP1--SUN1	1	2	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	31	290	0.09	0.01	0.0104	0.0209	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	AU565_BREAST	0.01	0.09	0.0313	FALSE	16	22	0	27	0	FALSE	ACH-000248
AU565_BREAST	DAGLB--RAC1	1	1	DAGLB	13204	chr7:6461358:-	RAC1	28740	chr7:6439757:+	ONLY_REF_SPLICE	NO	60	623	0.03	0	0.0104	0.0104	LOCAL_INVERSION:-:+:[5149],DAGLB->chr7:6448757-6523821:-,diacylglycerol_lipase_beta,RAC1->ArcherDX_panel,FoundationOne_panel,chr7:6414154-6443608:+,ras-related_C3_botulinum_toxin_substrate_1_(rho_family,_small_GTP_binding_protein_Rac1)	AU565_BREAST	0	0.03	0.0208	FALSE	0	0	0	2	0	FALSE	ACH-000248
AU565_BREAST	GRB7--ERBB2	1	1	GRB7	5474	chr17:37899723:+	ERBB2	26834	chr17:37871539:+	ONLY_REF_SPLICE	YES	1098	6044	0	0	0.0104	0.0104	LOCAL_REARRANGEMENT:+:[7501],GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2	AU565_BREAST	0	0	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000248
AU565_BREAST	IQCE--MAD1L1	1	1	IQCE	7261	chr7:2613122:+	MAD1L1	64497	chr7:2020176:-	ONLY_REF_SPLICE	YES	37	51	0.05	0.04	0.0104	0.0104	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Frontal_Cortex_(BA9)=1,Testis=1},IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	AU565_BREAST	0.04	0.05	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000248
AU565_BREAST	MAL2--TAF2	1	1	MAL2	5558	chr8:120233997:+	TAF2	15159	chr8:120831746:-	ONLY_REF_SPLICE	YES	2764	118	0	0.02	0.0104	0.0104	MAL2->chr8:120177273-120257913:+,mal,_T-cell_differentiation_protein_2_(gene/pseudogene),TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-	AU565_BREAST	0	0.02	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000248
AU565_BREAST	PAIP2--CTNNA1	1	1	PAIP2	1394	chr5:138677669:+	CTNNA1	22314	chr5:138145727:+	ONLY_REF_SPLICE	NO	139	914	0.01	0	0.0104	0.0104	PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	AU565_BREAST	0	0.01	0.0208	FALSE	1	1	0	1	0	FALSE	ACH-000248
AU565_BREAST	PVT1--FAM49B	1	1	PVT1	10746	chr8:128951922:+	FAM49B	36309	chr8:130915596:-	ONLY_REF_SPLICE	YES	21	166	0.09	0.01	0.0104	0.0104	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	AU565_BREAST	0.01	0.09	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000248
AU565_BREAST	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0104	0.0104	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	AU565_BREAST	1	1	0.0208	FALSE	93	270	15	244	0	FALSE	ACH-000248
AU565_BREAST	RP11-307P5.1--SASH1	1	1	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	NO	0	18	1	0.1	0.0104	0.0104	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	AU565_BREAST	0.1	1	0.0208	TRUE	0	2	0	37	2	FALSE	ACH-000248
AU565_BREAST	TBC1D31--SLC30A8	1	1	TBC1D31	28498	chr8:124157095:+	SLC30A8	35787	chr8:118019230:+	ONLY_REF_SPLICE	YES	78	0	0.03	1	0.0104	0.0104	TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+,SLC30A8->chr8:117962512-118188953:+,solute_carrier_family_30_member_8	AU565_BREAST	0.03	1	0.0208	TRUE	0	0	0	2	0	FALSE	ACH-000248
HS819T_FIBROBLAST	COL1A1--FN1	563	242	COL1A1	12966	chr17:48266809:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	19441	11740	0.04	0.06	6.307	2.711	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.04	0.06	9.018	TRUE	0	0	0	17	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	145	22	COL1A1	5208	chr17:48274567:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	13202	11740	0.01	0.01	1.6244	0.2465	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.01	1.8709	TRUE	0	0	0	9	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	6	417	COL1A1	14310	chr17:48265465:-	FN1	22230	chr2:216300791:-	INCL_NON_REF_SPLICE	YES	17059	1	0.02	1	0.0672	4.6714	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.02	1	4.7386	TRUE	0	0	0	7	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	7	321	COL1A1	16456	chr17:48263319:-	FN1	38883	chr2:216272917:-	INCL_NON_REF_SPLICE	YES	13724	14599	0.02	0.02	0.0784	3.596	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.02	0.02	3.6744	TRUE	0	0	0	2	0	FALSE	ACH-000224
HS819T_FIBROBLAST	CD63--TGFBI	84	2	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	3703	5819	0.02	0.01	0.941	0.0224	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS819T_FIBROBLAST	0.01	0.02	0.9634	TRUE	0	0	0	14	0	FALSE	ACH-000224
HS819T_FIBROBLAST	TIMM23B--LINC00843	75	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8402	0.2016	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS819T_FIBROBLAST	1	1	1.0418	TRUE	508	994	45	981	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	3	286	COL1A1	12999	chr17:48266776:-	FN1	22236	chr2:216300785:-	INCL_NON_REF_SPLICE	YES	17990	1	0.02	1	0.0336	3.2039	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.02	1	3.2375	TRUE	0	0	0	17	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	19	200	COL1A1	15650	chr17:48264125:-	FN1	58080	chr2:216243979:-	INCL_NON_REF_SPLICE	YES	13357	18576	0.02	0.01	0.2128	2.2405	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.02	2.4533	TRUE	0	0	0	18	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	9	227	COL1A1	12718	chr17:48267057:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	21112	11740	0.01	0.02	0.1008	2.543	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.02	2.6438	TRUE	0	0	0	17	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	4	240	COL1A1	13235	chr17:48266540:-	FN1	29153	chr2:216290005:-	INCL_NON_REF_SPLICE	YES	19276	15419	0.01	0.02	0.0448	2.6886	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.02	2.7334	TRUE	0	0	0	3	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	3	213	COL1A1	12074	chr17:48267701:-	FN1	22244	chr2:216300777:-	INCL_NON_REF_SPLICE	YES	20157	2	0.01	0.99	0.0336	2.3861	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.99	2.4197	TRUE	0	0	0	17	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	20	138	COL1A1	13456	chr17:48266319:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	17727	20929	0.01	0.01	0.224	1.5459	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.01	1.7699	TRUE	0	0	0	16	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	4	201	COL1A1	15683	chr17:48264092:-	FN1	58112	chr2:216243947:-	INCL_NON_REF_SPLICE	YES	14303	19083	0.01	0.01	0.0448	2.2517	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.01	2.2965	TRUE	0	0	0	18	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	6	189	COL1A1	13485	chr17:48266290:-	FN1	52399	chr2:216249662:-	INCL_NON_REF_SPLICE	YES	18776	17201	0.01	0.01	0.0672	2.1173	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.01	2.1845	TRUE	0	0	0	4	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	9	174	COL1A1	14920	chr17:48264855:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	15879	20929	0.01	0.01	0.1008	1.9492	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.01	2.05	TRUE	0	0	0	10	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	6	184	COL1A1	15399	chr17:48264376:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	16603	20929	0.01	0.01	0.0672	2.0613	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.01	2.1285	TRUE	0	0	0	10	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	3	189	COL1A1	13421	chr17:48266354:-	FN1	41986	chr2:216269232:-	INCL_NON_REF_SPLICE	YES	18527	14801	0.01	0.01	0.0336	2.1173	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.01	2.1509	TRUE	0	0	0	2	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	8	167	COL1A1	13883	chr17:48265892:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	18726	20929	0.01	0.01	0.0896	1.8708	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.01	1.9604	TRUE	0	0	0	16	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	5	179	COL1A1	15362	chr17:48264413:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	16998	20929	0.01	0.01	0.056	2.0052	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.01	2.0612	TRUE	0	0	0	10	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	5	171	COL1A1	12402	chr17:48267373:-	FN1	29153	chr2:216290005:-	INCL_NON_REF_SPLICE	YES	19791	15419	0.01	0.01	0.056	1.9156	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.01	1.9716	TRUE	0	0	0	3	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	3	176	COL1A1	14930	chr17:48264845:-	FN1	61587	chr2:216239972:-	INCL_NON_REF_SPLICE	YES	17018	21367	0.01	0.01	0.0336	1.9716	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.01	2.0052	TRUE	0	0	0	10	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	4	142	COL1A1	8475	chr17:48271300:-	FN1	26912	chr2:216295516:-	INCL_NON_REF_SPLICE	YES	20800	15007	0.01	0.01	0.0448	1.5908	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.01	1.6356	TRUE	0	0	0	8	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	3	140	COL1A1	9381	chr17:48270394:-	FN1	26925	chr2:216295503:-	INCL_NON_REF_SPLICE	YES	19781	15029	0.01	0.01	0.0336	1.5683	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.01	1.6019	TRUE	0	0	0	8	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	9	116	COL1A1	7685	chr17:48272090:-	FN1	22275	chr2:216300746:-	INCL_NON_REF_SPLICE	YES	16435	6	0.01	0.95	0.1008	1.2995	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.95	1.4003	TRUE	0	0	0	13	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	8	114	COL1A1	7799	chr17:48271976:-	FN1	22300	chr2:216300721:-	INCL_NON_REF_SPLICE	YES	16683	34	0.01	0.78	0.0896	1.2771	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.78	1.3667	TRUE	0	0	0	13	0	FALSE	ACH-000224
HS819T_FIBROBLAST	TIMM23--RP11-464F9.1	36	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4033	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS819T_FIBROBLAST	1	1	0.4033	TRUE	519	3926	326	965	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	8	103	COL1A1	12982	chr17:48266793:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	18360	20929	0.01	0.01	0.0896	1.1539	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.01	1.2435	TRUE	0	0	0	17	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	4	111	COL1A1	8409	chr17:48271366:-	FN1	38957	chr2:216272843:-	INCL_NON_REF_SPLICE	YES	19045	14661	0.01	0.01	0.0448	1.2435	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0.01	0.01	1.2883	TRUE	0	0	0	1	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	9	86	COL1A1	12367	chr17:48267408:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	19780	20929	0	0	0.1008	0.9634	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	1.0642	TRUE	0	0	0	13	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	3	97	COL1A1	12998	chr17:48266777:-	FN1	61593	chr2:216239966:-	INCL_NON_REF_SPLICE	YES	18080	21410	0.01	0	0.0336	1.0866	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0.01	1.1202	TRUE	0	0	0	17	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL25A1--COL8A1	27	0	COL25A1	20923	chr4:109784475:-	COL8A1	60706	chr3:99513315:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3025	0	HGNC_GENEFAM,PROTCLUST,COL25A1->chr4:109731877-110223813:-,collagen_type_XXV_alpha_1,COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1	HS819T_FIBROBLAST	1	1	0.3025	TRUE	0	0	0	1	0	TRUE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	6	83	COL1A1	12050	chr17:48267725:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	20647	20929	0	0	0.0672	0.9298	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	0.997	TRUE	0	0	0	13	0	FALSE	ACH-000224
HS819T_FIBROBLAST	RP11-680G10.1--GSE1	26	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	12	1	0.69	0.2913	0.0112	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS819T_FIBROBLAST	0.69	1	0.3025	TRUE	465	1949	224	605	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	11	59	COL1A1	7831	chr17:48271944:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	17124	20929	0	0	0.1232	0.6609	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	0.7841	TRUE	0	0	0	14	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	3	89	COL1A1	8258	chr17:48271517:-	FN1	51092	chr2:216251681:-	INCL_NON_REF_SPLICE	YES	18419	18702	0	0	0.0336	0.997	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	1.0306	TRUE	0	0	0	1	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	14	41	COL1A1	13242	chr17:48266533:-	FN1	63801	chr2:216236956:-	INCL_NON_REF_SPLICE	YES	19221	19849	0	0	0.1568	0.4593	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	0.6161	TRUE	0	0	0	8	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	3	83	COL1A1	12383	chr17:48267392:-	FN1	61593	chr2:216239966:-	INCL_NON_REF_SPLICE	YES	19973	21410	0	0	0.0336	0.9298	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	0.9634	TRUE	0	0	0	13	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	5	69	COL1A1	6831	chr17:48272944:-	FN1	22524	chr2:216300497:-	INCL_NON_REF_SPLICE	YES	16443	10958	0	0.01	0.056	0.773	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0.01	0.829	TRUE	0	0	0	13	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	3	76	COL1A1	11602	chr17:48268173:-	FN1	61575	chr2:216239984:-	INCL_NON_REF_SPLICE	YES	19913	20703	0	0	0.0336	0.8514	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	0.885	TRUE	0	0	0	13	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	5	67	COL1A1	6826	chr17:48272949:-	FN1	22519	chr2:216300502:-	INCL_NON_REF_SPLICE	YES	16291	10982	0	0.01	0.056	0.7506	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0.01	0.8066	TRUE	0	0	0	13	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	4	60	COL1A1	6839	chr17:48272936:-	FN1	37175	chr2:216274761:-	INCL_NON_REF_SPLICE	NO	16736	16028	0	0	0.0448	0.6721	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	0.7169	FALSE	0	0	0	1	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	3	58	COL1A1	7985	chr17:48271790:-	FN1	61608	chr2:216239951:-	INCL_NON_REF_SPLICE	YES	18283	21560	0	0	0.0336	0.6497	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	0.6833	TRUE	0	0	0	14	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	4	53	COL1A1	16488	chr17:48263287:-	FN1	63869	chr2:216236888:-	INCL_NON_REF_SPLICE	YES	14617	19856	0	0	0.0448	0.5937	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	0.6385	TRUE	0	0	0	1	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	7	38	COL1A1	15751	chr17:48264024:-	FN1	65284	chr2:216235130:-	INCL_NON_REF_SPLICE	YES	14373	22766	0	0	0.0784	0.4257	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	0.5041	TRUE	0	0	0	7	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	3	52	COL1A1	7994	chr17:48271781:-	FN1	62623	chr2:216238134:-	INCL_NON_REF_SPLICE	YES	18287	23989	0	0	0.0336	0.5825	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	0.6161	TRUE	0	0	0	8	0	FALSE	ACH-000224
HS819T_FIBROBLAST	RP11-680G10.1--GSE1	15	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.9	0.168	0.0448	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS819T_FIBROBLAST	0.9	1	0.2128	TRUE	458	1351	185	561	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	8	28	COL1A1	6258	chr17:48273517:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	17321	20929	0	0	0.0896	0.3137	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	0.4033	TRUE	0	0	0	10	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	4	41	COL1A1	7118	chr17:48272657:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	18541	20929	0	0	0.0448	0.4593	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	0.5041	TRUE	0	0	0	15	0	FALSE	ACH-000224
HS819T_FIBROBLAST	MT-TA--MT-TC	14	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1568	0.0112	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS819T_FIBROBLAST	1	1	0.168	FALSE	462	80	0	856	0	FALSE	ACH-000224
HS819T_FIBROBLAST	KANSL1--ARL17B	11	4	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	11	36	0.58	0.29	0.1232	0.0448	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HS819T_FIBROBLAST	0.29	0.58	0.168	TRUE	181	1564	124	196	0	FALSE	ACH-000224
HS819T_FIBROBLAST	PRR16--CTD-2334D19.1	11	4	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	67	0	0.18	1	0.1232	0.0448	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS819T_FIBROBLAST	0.18	1	0.168	FALSE	56	216	12	147	0	FALSE	ACH-000224
HS819T_FIBROBLAST	MT-ND6--MT-TE	11	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1232	0.0224	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS819T_FIBROBLAST	1	1	0.1456	FALSE	499	1288	110	792	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	3	28	COL1A1	6259	chr17:48273516:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	17358	20929	0	0	0.0336	0.3137	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	0.3473	TRUE	0	0	0	10	0	FALSE	ACH-000224
HS819T_FIBROBLAST	PRR16--CTD-2334D19.1	8	5	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	29	0	0.31	1	0.0896	0.056	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS819T_FIBROBLAST	0.31	1	0.1456	FALSE	21	45	1	60	0	FALSE	ACH-000224
HS819T_FIBROBLAST	RP4-565E6.1--HYDIN	8	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0896	0.0112	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS819T_FIBROBLAST	1	1	0.1008	TRUE	456	1387	91	133	0	FALSE	ACH-000224
HS819T_FIBROBLAST	CTD-2337A12.1--CAST	8	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0896	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS819T_FIBROBLAST	1	1	0.0896	TRUE	347	1186	183	220	0	FALSE	ACH-000224
HS819T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	7	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.91	0.83	0.0784	0.0336	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS819T_FIBROBLAST	0.83	0.91	0.112	FALSE	515	4851	409	746	0	FALSE	ACH-000224
HS819T_FIBROBLAST	MT-ND6--MT-TE	5	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.056	0.112	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS819T_FIBROBLAST	0.94	1	0.168	FALSE	499	1288	110	792	0	FALSE	ACH-000224
HS819T_FIBROBLAST	MT-ND6--MT-TE	7	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0784	0.0224	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS819T_FIBROBLAST	1	1	0.1008	FALSE	499	1288	110	792	0	FALSE	ACH-000224
HS819T_FIBROBLAST	EEF1DP3--FRY	6	5	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	0	4	1	0.73	0.0672	0.056	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS819T_FIBROBLAST	0.73	1	0.1232	FALSE	20	24	2	21	0	FALSE	ACH-000224
HS819T_FIBROBLAST	IGFBP7--MT-ND4L	7	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0784	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS819T_FIBROBLAST	1	1	0.0784	FALSE	1	0	0	30	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	3	11	COL1A1	3982	chr17:48275793:-	FN1	22307	chr2:216300714:-	INCL_NON_REF_SPLICE	YES	8750	34	0	0.29	0.0336	0.1232	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0.29	0.1568	TRUE	0	0	0	1	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	4	5	COL1A1	7648	chr17:48272127:-	FN1	71454	chr2:216226769:-	INCL_NON_REF_SPLICE	YES	15995	20834	0	0	0.0448	0.056	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	0.1008	TRUE	0	0	0	2	0	FALSE	ACH-000224
HS819T_FIBROBLAST	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.056	0.0112	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS819T_FIBROBLAST	1	1	0.0672	FALSE	292	1546	117	613	0	FALSE	ACH-000224
HS819T_FIBROBLAST	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS819T_FIBROBLAST	1	1	0.056	FALSE	462	80	0	856	0	FALSE	ACH-000224
HS819T_FIBROBLAST	VIM-AS1--SERPINE1	5	0	VIM-AS1	1072	chr10:17271913:-	SERPINE1	12331	chr7:100773810:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	HS819T_FIBROBLAST	1	1	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	4	3	COL1A1	4240	chr17:48275535:-	FN1	61594	chr2:216239965:-	INCL_NON_REF_SPLICE	YES	8744	21396	0	0	0.0448	0.0336	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	0.0784	FALSE	0	0	0	4	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	4	2	COL1A1	4224	chr17:48275551:-	FN1	61577	chr2:216239982:-	INCL_NON_REF_SPLICE	YES	9008	20887	0	0	0.0448	0.0224	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	0.0672	FALSE	0	0	0	4	0	FALSE	ACH-000224
HS819T_FIBROBLAST	COL1A1--FN1	3	5	COL1A1	4249	chr17:48275526:-	FN1	61603	chr2:216239956:-	INCL_NON_REF_SPLICE	YES	9348	21498	0	0	0.0336	0.056	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS819T_FIBROBLAST	0	0	0.0896	FALSE	0	0	0	4	0	FALSE	ACH-000224
HS819T_FIBROBLAST	FTH1--ACTB	4	0	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS819T_FIBROBLAST	1	1	0.0448	TRUE	1	0	0	97	0	FALSE	ACH-000224
HS819T_FIBROBLAST	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0.0224	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS819T_FIBROBLAST	1	1	0.056	FALSE	462	80	0	856	0	FALSE	ACH-000224
HS819T_FIBROBLAST	BGN--TGFBI	3	1	BGN	2855	chrX:152770758:+	TGFBI	19207	chr5:135388611:+	INCL_NON_REF_SPLICE	YES	1401	6688	0	0	0.0336	0.0112	BGN->Oncogene{Bushman},biglycan,chrX:152760397-152775012:+,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS819T_FIBROBLAST	0	0	0.0448	FALSE	0	0	0	2	0	FALSE	ACH-000224
HS819T_FIBROBLAST	MT-TA--MT-TC	3	1	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0.0112	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS819T_FIBROBLAST	1	1	0.0448	FALSE	462	80	0	856	0	FALSE	ACH-000224
HS819T_FIBROBLAST	MYH9--COMP	3	1	MYH9	40272	chr22:36678648:-	COMP	48291	chr19:18898426:-	INCL_NON_REF_SPLICE	YES	797	3244	0	0	0.0336	0.0112	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,COMP->cartilage_oligomeric_matrix_protein,chr19:18893583-18902123:-	HS819T_FIBROBLAST	0	0	0.0448	FALSE	0	0	0	1	0	FALSE	ACH-000224
HS819T_FIBROBLAST	ADIRF-AS1--LGALS1	3	0	ADIRF-AS1	3782	chr10:88728287:-	LGALS1	10007	chr22:38071654:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	ADIRF-AS1->ADIRF_antisense_RNA_1,chr10:88725102-88731068:-,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	HS819T_FIBROBLAST	1	1	0.0336	TRUE	0	0	0	5	0	TRUE	ACH-000224
HS819T_FIBROBLAST	FTH1--ACTB	3	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS819T_FIBROBLAST	1	1	0.0336	TRUE	1	0	0	97	0	FALSE	ACH-000224
HS819T_FIBROBLAST	FTH1--ACTB	3	0	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS819T_FIBROBLAST	1	1	0.0336	TRUE	1	0	0	97	0	FALSE	ACH-000224
HS819T_FIBROBLAST	RP11-254I22.1--CTD-2337A12.1	3	0	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HS819T_FIBROBLAST	1	1	0.0336	TRUE	6	15	3	35	0	FALSE	ACH-000224
HS819T_FIBROBLAST	VIM--TPM2	3	0	VIM	2115	chr10:17271372:+	TPM2	13298	chr9:35689924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS819T_FIBROBLAST	1	1	0.0336	TRUE	0	0	0	8	0	TRUE	ACH-000224
HS819T_FIBROBLAST	EEF1DP3--FRY	1	5	EEF1DP3	3331	chr13:32520318:+	FRY	12212	chr13:32612567:+	ONLY_REF_SPLICE	YES	0	4	1	0.6	0.0112	0.056	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS819T_FIBROBLAST	0.6	1	0.0672	FALSE	1	3	0	6	0	FALSE	ACH-000224
HS819T_FIBROBLAST	LTBP2--NID1	2	1	LTBP2	22002	chr14:74976794:-	NID1	50411	chr1:236175343:-	ONLY_REF_SPLICE	YES	1779	89	0	0.03	0.0224	0.0112	LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2,NID1->chr1:236139130-236228462:-,nidogen_1	HS819T_FIBROBLAST	0	0.03	0.0336	FALSE	0	0	0	1	0	FALSE	ACH-000224
HS819T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.86	1	0.0112	0.056	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS819T_FIBROBLAST	0.86	1	0.0672	FALSE	407	2205	196	549	0	FALSE	ACH-000224
HS819T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	2	1	0.75	0.0112	0.056	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS819T_FIBROBLAST	0.75	1	0.0672	FALSE	467	2173	244	435	0	FALSE	ACH-000224
HS819T_FIBROBLAST	ARNT--PPP2CB	2	0	ARNT	15007	chr1:150801569:-	PPP2CB	33166	chr8:30657271:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	ARNT->Oncogene{Bushman},aryl_hydrocarbon_receptor_nuclear_translocator,chr1:150782181-150849244:-,PPP2CB->chr8:30631973-30671830:-,protein_phosphatase_2_catalytic_subunit_beta	HS819T_FIBROBLAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000224
HS819T_FIBROBLAST	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HS819T_FIBROBLAST	1	1	0.0224	TRUE	4	2	0	28	0	FALSE	ACH-000224
HS819T_FIBROBLAST	RP4-565E6.1--HYDIN	2	0	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS819T_FIBROBLAST	1	1	0.0224	TRUE	84	87	4	41	0	FALSE	ACH-000224
HS819T_FIBROBLAST	SP100--TRIP12	2	0	SP100	2724	chr2:231282380:+	TRIP12	49183	chr2:230724290:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	SP100->SP100_nuclear_antigen,chr2:231280657-231408805:+,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	HS819T_FIBROBLAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000224
HS819T_FIBROBLAST	EEF1DP3--FRY	1	2	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	3	4	0.5	0.43	0.0112	0.0224	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS819T_FIBROBLAST	0.43	0.5	0.0336	FALSE	18	26	2	21	0	FALSE	ACH-000224
HS819T_FIBROBLAST	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.38	1	0.0112	0.0224	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS819T_FIBROBLAST	0.38	1	0.0336	FALSE	164	806	69	479	0	FALSE	ACH-000224
HS819T_FIBROBLAST	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	7	0	0.22	1	0.0112	0.0112	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS819T_FIBROBLAST	0.22	1	0.0224	FALSE	7	44	2	41	0	FALSE	ACH-000224
HS819T_FIBROBLAST	RP1-34H18.1--NAV3	1	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0112	0.0112	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HS819T_FIBROBLAST	1	1	0.0224	TRUE	254	575	65	124	0	FALSE	ACH-000224
HS819T_FIBROBLAST	STAM--TPP2	1	1	STAM	2340	chr10:17702547:+	TPP2	46897	chr13:103309406:+	ONLY_REF_SPLICE	YES	53	35	0.04	0.05	0.0112	0.0112	STAM->chr10:17686124-17757913:+,signal_transducing_adaptor_molecule,TPP2->chr13:103249353-103331521:+,tripeptidyl_peptidase_2	HS819T_FIBROBLAST	0.04	0.05	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000224
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-15--AC096579.7	179	23232	IGKV3-15	1612	chr2:89384672:-	AC096579.7	6297	chr2:89161433:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.2226	288.4701	GTEx_FI:{Adrenal_Gland=[count:1=pct:1.2],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Ovary=[count:1=pct:1.9]},IGKV3-15->chr2:89384673-89385283:-,immunoglobulin_kappa_variable_3-15,AC096579.7->chr2:89130700-89165653:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	290.6927	TRUE	5	65	1	1	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-15--AC096579.7	3	11766	IGKV3-15	1599	chr2:89384685:-	AC096579.7	7419	chr2:89157110:-	INCL_NON_REF_SPLICE	YES	0	794	1	0.94	0.0373	146.0976	GTEx_FI:{Adrenal_Gland=[count:1=pct:1.2],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Ovary=[count:1=pct:1.9]},IGKV3-15->chr2:89384673-89385283:-,immunoglobulin_kappa_variable_3-15,AC096579.7->chr2:89130700-89165653:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	146.1349	TRUE	4	53	1	1	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-15--AC096579.7	15	11407	IGKV3-15	1546	chr2:89384738:-	AC096579.7	7368	chr2:89157161:-	INCL_NON_REF_SPLICE	YES	72	44	0.99	1	0.1863	141.6399	GTEx_FI:{Adrenal_Gland=[count:1=pct:1.2],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Ovary=[count:1=pct:1.9]},IGKV3-15->chr2:89384673-89385283:-,immunoglobulin_kappa_variable_3-15,AC096579.7->chr2:89130700-89165653:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	141.8262	TRUE	4	53	1	1	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-15--IGKJ4	2339	25	IGKV3-15	1611	chr2:89384673:-	IGKJ4	4612	chr2:89160434:-	ONLY_REF_SPLICE	YES	0	0	1	1	29.0432	0.3104	GTEx_FI:{Blood=[count:4=pct:2.3],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Adrenal_Gland=[count:1=pct:1.2],Salivary_Gland=[count:1=pct:2.6],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Ovary=[count:1=pct:1.9]},HGNC_GENEFAM,IGKV3-15->chr2:89384673-89385283:-,immunoglobulin_kappa_variable_3-15,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	29.3536	FALSE	16	195	12	1	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-15--AC096579.7	7	9142	IGKV3-15	1474	chr2:89384810:-	AC096579.7	7338	chr2:89157191:-	INCL_NON_REF_SPLICE	YES	2961	2	0.76	1	0.0869	113.5156	GTEx_FI:{Adrenal_Gland=[count:1=pct:1.2],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Ovary=[count:1=pct:1.9]},IGKV3-15->chr2:89384673-89385283:-,immunoglobulin_kappa_variable_3-15,AC096579.7->chr2:89130700-89165653:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	113.6025	TRUE	4	53	1	1	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOA3--PRKD2	154	71	NCOA3	2242	chr20:46212005:+	PRKD2	37746	chr19:47201107:-	ONLY_REF_SPLICE	YES	128	90	0.64	0.71	1.9122	0.8816	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,PRKD2->chr19:47177532-47220384:-,protein_kinase_D2	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.71	2.7938	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FCHSD2--NCF2	90	54	FCHSD2	4185	chr11:72794740:-	NCF2	31311	chr1:183546842:-	ONLY_REF_SPLICE	YES	58	0	0.71	1	1.1175	0.6705	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,NCF2->chr1:183524698-183560011:-,neutrophil_cytosolic_factor_2	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	1.788	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EFTUD2--MAP3K14	63	32	EFTUD2	16093	chr17:42949814:-	MAP3K14	36779	chr17:43366671:-	ONLY_REF_SPLICE	YES	179	62	0.35	0.61	0.7823	0.3973	{Klijn_CCL:Lymphoid=1},EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2,MAP3K14->chr17:43340488-43394414:-,mitogen-activated_protein_kinase_kinase_kinase_14	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.61	1.1796	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SIK2--MCM3	55	32	SIK2	3489	chr11:111491126:+	MCM3	27278	chr6:52148204:-	ONLY_REF_SPLICE	YES	53	1186	0.62	0.07	0.6829	0.3973	SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2,MCM3->chr6:52128807-52149679:-,minichromosome_maintenance_complex_component_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.62	1.0802	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-15--AC096579.7	11	189	IGKV3-15	1402	chr2:89384882:-	AC096579.7	7643	chr2:89156886:-	INCL_NON_REF_SPLICE	NO	5428	8529	0.04	0.02	0.1366	2.3468	GTEx_FI:{Adrenal_Gland=[count:1=pct:1.2],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Ovary=[count:1=pct:1.9]},IGKV3-15->chr2:89384673-89385283:-,immunoglobulin_kappa_variable_3-15,AC096579.7->chr2:89130700-89165653:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	2.4834	TRUE	4	53	1	1	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP3CA--TBCK	45	28	PPP3CA	2540	chr4:102267896:-	TBCK	61631	chr4:107037535:-	ONLY_REF_SPLICE	YES	49	29	0.6	0.72	0.5588	0.3477	PPP3CA->chr4:101944566-102269435:-,protein_phosphatase_3_catalytic_subunit_alpha,TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.72	0.9065	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	39	35	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	0	0.95	1	0.4843	0.4346	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.9189	FALSE	515	4851	409	746	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	41	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.95	0.5091	0.2608	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.7699	TRUE	508	994	45	981	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	42	12	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	3	0	0.95	1	0.5215	0.149	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.6705	TRUE	0	0	0	25	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	34	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4222	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4222	TRUE	0	0	0	518	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	33	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4098	0.0373	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4471	FALSE	462	80	0	856	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	28	9	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	3	0	0.93	1	0.3477	0.1118	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.4595	TRUE	0	0	0	16	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1407O15.2--AC124789.1	27	11	RP11-1407O15.2	5790	chr17:36375100:-	AC124789.1	30615	chr17:36608071:-	ONLY_REF_SPLICE	YES	209	1	0.15	0.97	0.3353	0.1366	RP11-1407O15.2->chr17:36337717-36421858:-,AC124789.1->chr17:36606638-36608688:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.97	0.4719	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC41--TMCC3	26	13	CCDC41	1432	chr12:94853333:-	TMCC3	34241	chr12:94976314:-	ONLY_REF_SPLICE	YES	49	35	0.44	0.53	0.3228	0.1614	CCDC41->chr12:94700225-94853764:-,TMCC3->chr12:94960900-95044338:-,transmembrane_and_coiled-coil_domain_family_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.53	0.4842	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-15--AC096579.7	4	101	IGKV3-15	1146	chr2:89385138:-	AC096579.7	7333	chr2:89157196:-	ONLY_REF_SPLICE	YES	227	0	0.32	1	0.0497	1.2541	GTEx_FI:{Adrenal_Gland=[count:1=pct:1.2],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Ovary=[count:1=pct:1.9]},IGKV3-15->chr2:89384673-89385283:-,immunoglobulin_kappa_variable_3-15,AC096579.7->chr2:89130700-89165653:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	1.3038	TRUE	4	53	1	1	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAMP2--MPI	22	24	SCAMP2	1167	chr15:75165540:-	MPI	15095	chr15:75183720:+	ONLY_REF_SPLICE	YES	320	310	0.13	0.13	0.2732	0.298	LOCAL_INVERSION:-:+:[16640],SCAMP2->chr15:75136071-75165706:-,secretory_carrier_membrane_protein_2,MPI->chr15:75182346-75191798:+,mannose_phosphate_isomerase	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.13	0.5712	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	25	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3104	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3104	FALSE	499	1288	110	792	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	23	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	136	12	0.16	0.68	0.2856	0.0373	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.68	0.3229	TRUE	519	3926	326	965	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	21	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2608	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2608	TRUE	0	0	0	434	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC30A9--SRSF3	20	0	SLC30A9	2454	chr4:42003797:+	SRSF3	32136	chr6:36568929:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2483	0	SLC30A9->chr4:41992489-42092474:+,solute_carrier_family_30_member_9,SRSF3->Oncogene{Bushman},chr6:36562145-36573377:+,serine/arginine-rich_splicing_factor_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2483	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR1--EP300	19	0	GLTSCR1	1973	chr19:48112425:+	EP300	23521	chr22:41513191:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2359	0	GLTSCR1->chr19:48111453-48206533:+,glioma_tumor_suppressor_candidate_region_gene_1,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2359	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.1614	0.0745	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.2359	FALSE	499	1288	110	792	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	39	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.96	1	0.0497	0.4843	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.534	FALSE	467	2173	244	435	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SIK2--MCM3	6	30	SIK2	3489	chr11:111491126:+	MCM3	27282	chr6:52148200:-	INCL_NON_REF_SPLICE	YES	53	1123	0.4	0.03	0.0745	0.3725	SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2,MCM3->chr6:52128807-52149679:-,minichromosome_maintenance_complex_component_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.4	0.447	TRUE	0	0	0	1	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-344E13.3--UBBP4	4	36	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0497	0.447	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4967	TRUE	23	13	0	54	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FCHSD2--NCF2	3	37	FCHSD2	3139	chr11:72851076:-	NCF2	31311	chr1:183546842:-	ONLY_REF_SPLICE	YES	51	0	0.44	1	0.0373	0.4594	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,NCF2->chr1:183524698-183560011:-,neutrophil_cytosolic_factor_2	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.4967	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	43	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.96	1	0.0124	0.5339	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.5463	FALSE	192	492	57	212	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	38	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.91	1	0.0248	0.4718	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.4966	FALSE	407	2205	196	549	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHSY3--HSPA8P4	9	8	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	46	0	0.27	1	0.1118	0.0993	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.2111	FALSE	89	26	1	44	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HERC1--DAPK2	9	6	HERC1	10471	chr15:64046704:-	DAPK2	92020	chr15:64332466:-	ONLY_REF_SPLICE	YES	17	0	0.47	1	0.1118	0.0745	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:-:[73094],HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.1863	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	38	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	4	0	0.91	1	0.0124	0.4718	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.4842	FALSE	275	511	55	178	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTMR9--UNC5D	8	5	MTMR9	5607	chr8:11157657:+	UNC5D	25394	chr8:35406810:+	ONLY_REF_SPLICE	YES	18	0	0.42	1	0.0993	0.0621	MTMR9->chr8:11141925-11185646:+,myotubularin_related_protein_9,UNC5D->chr8:35092975-35654068:+,unc-5_netrin_receptor_D	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.1614	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1118	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1118	FALSE	499	1288	110	792	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--DAZL	8	4	RFTN1	3399	chr3:16535232:-	DAZL	29050	chr3:16640105:-	ONLY_REF_SPLICE	YES	154	1	0.07	0.92	0.0993	0.0497	YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],LOCAL_REARRANGEMENT:-:[72766],RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,DAZL->chr3:16628299-16711813:-,deleted_in_azoospermia_like	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.92	0.149	TRUE	0	1	0	2	1	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	7	6	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0869	0.0745	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1614	TRUE	0	1	0	84	1	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	4	16	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	10	0	0.67	1	0.0497	0.1987	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.2484	TRUE	1	1	0	28	1	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAMP2--MPI	1	28	SCAMP2	1167	chr15:75165540:-	MPI	14154	chr15:75182779:+	ONLY_REF_SPLICE	NO	320	23	0.08	0.56	0.0124	0.3477	LOCAL_INVERSION:-:+:[16640],SCAMP2->chr15:75136071-75165706:-,secretory_carrier_membrane_protein_2,MPI->chr15:75182346-75191798:+,mannose_phosphate_isomerase	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.56	0.3601	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	8	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0993	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0993	FALSE	0	0	0	189	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC41--TMCC3	4	15	CCDC41	2485	chr12:94829051:-	TMCC3	34241	chr12:94976314:-	ONLY_REF_SPLICE	YES	55	35	0.26	0.35	0.0497	0.1863	CCDC41->chr12:94700225-94853764:-,TMCC3->chr12:94960900-95044338:-,transmembrane_and_coiled-coil_domain_family_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.35	0.236	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0869	0.0373	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1242	FALSE	499	1288	110	792	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAMP2--MPI	1	27	SCAMP2	1167	chr15:75165540:-	MPI	14243	chr15:75182868:+	ONLY_REF_SPLICE	NO	320	28	0.08	0.5	0.0124	0.3353	LOCAL_INVERSION:-:+:[16640],SCAMP2->chr15:75136071-75165706:-,secretory_carrier_membrane_protein_2,MPI->chr15:75182346-75191798:+,mannose_phosphate_isomerase	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.5	0.3477	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	59	35	0.2	0.3	0.0621	0.1242	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.3	0.1863	TRUE	267	562	48	632	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	6	6	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0745	0.0745	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.149	TRUE	0	1	0	84	1	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DTX2--SRRM3	7	1	DTX2	3034	chr7:76093026:+	SRRM3	26472	chr7:75877506:+	ONLY_REF_SPLICE	YES	26	0	0.24	1	0.0869	0.0124	DTX2->Oncogene{Bushman},chr7:76090993-76135312:+,deltex_2,_E3_ubiquitin_ligase,SRRM3->chr7:75831216-75916605:+,serine/arginine_repetitive_matrix_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.0993	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	57	37	0.19	0.26	0.0621	0.0993	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.26	0.1614	TRUE	267	562	48	632	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0745	0.0497	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1242	FALSE	462	80	0	856	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0869	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0869	FALSE	462	80	0	856	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC6--RAPGEFL1	5	7	CDC6	8634	chr17:38453019:+	RAPGEFL1	20315	chr17:38345086:+	INCL_NON_REF_SPLICE	YES	152	6	0.07	0.67	0.0621	0.0869	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:+:[91977],CDC6->Oncogene{Bushman},cell_division_cycle_6,chr17:38443885-38459171:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.67	0.149	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DTX2--SRRM3	6	3	DTX2	4154	chr7:76099736:+	SRRM3	26472	chr7:75877506:+	ONLY_REF_SPLICE	YES	26	0	0.26	1	0.0745	0.0373	DTX2->Oncogene{Bushman},chr7:76090993-76135312:+,deltex_2,_E3_ubiquitin_ligase,SRRM3->chr7:75831216-75916605:+,serine/arginine_repetitive_matrix_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.1118	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL17RB--CACNA1D	6	3	IL17RB	10322	chr3:53894255:+	CACNA1D	19372	chr3:53684806:+	ONLY_REF_SPLICE	YES	102	0	0.08	1	0.0745	0.0373	LOCAL_REARRANGEMENT:+:[32847],IL17RB->Oncogene{Bushman},chr3:53880607-53899827:+,interleukin_17_receptor_B,CACNA1D->calcium_voltage-gated_channel_subunit_alpha1_D,chr3:53528683-53847760:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.1118	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL6ST--AC022431.2	6	3	IL6ST	1210	chr5:55290612:-	AC022431.2	32294	chr5:55828982:-	ONLY_REF_SPLICE	YES	37	8	0.2	0.53	0.0745	0.0373	IL6ST->Oncogene{Bushman},chr5:55230923-55290821:-,interleukin_6_signal_transducer,AC022431.2->chr5:55807394-55902059:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.53	0.1118	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0745	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0745	FALSE	183	104	9	328	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC6--RAPGEFL1	4	7	CDC6	8634	chr17:38453019:+	RAPGEFL1	20347	chr17:38345118:+	ONLY_REF_SPLICE	YES	152	7	0.07	0.61	0.0497	0.0869	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:+:[91977],CDC6->Oncogene{Bushman},cell_division_cycle_6,chr17:38443885-38459171:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.61	0.1366	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EFTUD2--MAP3K14	3	11	EFTUD2	14070	chr17:42953302:-	MAP3K14	36779	chr17:43366671:-	ONLY_REF_SPLICE	YES	331	62	0.04	0.18	0.0373	0.1366	{Klijn_CCL:Lymphoid=1},EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2,MAP3K14->chr17:43340488-43394414:-,mitogen-activated_protein_kinase_kinase_kinase_14	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.18	0.1739	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL6ST--AC022431.2	5	3	IL6ST	1210	chr5:55290612:-	AC022431.2	31195	chr5:55831055:-	ONLY_REF_SPLICE	YES	37	0	0.18	1	0.0621	0.0373	IL6ST->Oncogene{Bushman},chr5:55230923-55290821:-,interleukin_6_signal_transducer,AC022431.2->chr5:55807394-55902059:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.0994	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	6	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.77	1	0.0497	0.0745	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.1242	FALSE	499	1288	110	792	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	5	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0621	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0621	TRUE	1	10	0	18	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	2	11	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	10	0	0.57	1	0.0248	0.1366	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.1614	TRUE	0	0	0	11	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	4	3	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	3	0.78	0.7	0.0497	0.0373	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.78	0.087	FALSE	141	264	50	91	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	6	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.75	1	0.0373	0.0745	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.1118	FALSE	499	1288	110	792	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ENO1--EEF2	4	1	ENO1	11548	chr1:8923321:-	EEF2	24932	chr19:3976731:-	INCL_NON_REF_SPLICE	YES	4547	4118	0	0	0.0497	0.0124	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0621	FALSE	0	0	0	9	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL6ST--ANKRD55	3	5	IL6ST	7786	chr5:55259180:-	ANKRD55	34841	chr5:55455720:-	ONLY_REF_SPLICE	YES	257	1	0.03	0.89	0.0373	0.0621	IL6ST->Oncogene{Bushman},chr5:55230923-55290821:-,interleukin_6_signal_transducer,ANKRD55->ankyrin_repeat_domain_55,chr5:55395507-55529186:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.89	0.0994	TRUE	0	0	0	1	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTMR9--UNC5D	3	5	MTMR9	5700	chr8:11157750:+	UNC5D	25394	chr8:35406810:+	INCL_NON_REF_SPLICE	YES	26	0	0.24	1	0.0373	0.0621	MTMR9->chr8:11141925-11185646:+,myotubularin_related_protein_9,UNC5D->chr8:35092975-35654068:+,unc-5_netrin_receptor_D	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.0994	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HLA-DRB1--PTMA	4	0	HLA-DRB1	1176	chr6:32557450:-	PTMA	11036	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	HLA-DRB1->chr6:32546546-32557625:-,major_histocompatibility_complex,_class_II,_DR_beta_1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0497	FALSE	0	0	0	3	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0.0497	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.087	FALSE	462	80	0	856	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0497	TRUE	22	156	2	142	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED27--SETX	3	3	MED27	2412	chr9:134952829:-	SETX	36151	chr9:135158800:-	ONLY_REF_SPLICE	YES	59	51	0.09	0.11	0.0373	0.0373	MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27,SETX->chr9:135136743-135230372:-,senataxin	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.11	0.0746	TRUE	0	0	0	1	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC6--RAPGEFL1	2	6	CDC6	7519	chr17:38451708:+	RAPGEFL1	20347	chr17:38345118:+	ONLY_REF_SPLICE	YES	139	7	0.05	0.53	0.0248	0.0745	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:+:[91977],CDC6->Oncogene{Bushman},cell_division_cycle_6,chr17:38443885-38459171:+,RAPGEFL1->Rap_guanine_nucleotide_exchange_factor_like_1,chr17:38333263-38351908:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.53	0.0993	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3494	0	0	1	0.0373	0.0124	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0497	FALSE	13	9	0	364	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EFTUD2--RP11-326A19.4	3	0	EFTUD2	1294	chr17:42976737:-	RP11-326A19.4	35492	chr15:89613322:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2,RP11-326A19.4->chr15:89584454-89626050:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE7A--CTD-3025N20.2	3	0	PDE7A	1952	chr8:66753606:-	CTD-3025N20.2	27862	chr8:66447099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	PDE7A->chr8:66629745-66754557:-,phosphodiesterase_7A,CTD-3025N20.2->chr8:66439243-66475015:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMCHD1--NDC80	2	3	SMCHD1	34422	chr18:2752550:+	NDC80	57019	chr18:2572976:+	ONLY_REF_SPLICE	YES	111	314	0.04	0.02	0.0248	0.0373	LOCAL_REARRANGEMENT:+:[39103],SMCHD1->chr18:2655737-2805015:+,structural_maintenance_of_chromosomes_flexible_hinge_domain_containing_1,NDC80->NDC80_kinetochore_complex_component,chr18:2571510-2616634:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0621	TRUE	0	0	0	1	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	1	6	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	3	0.7	0.7	0.0124	0.0745	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.7	0.0869	FALSE	49	120	16	70	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	2	2	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0.0248	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0496	FALSE	46	201	11	112	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	1	5	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	10	7	0.38	0.46	0.0124	0.0621	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.46	0.0745	TRUE	0	0	0	13	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SIK2--MCM3	2	1	SIK2	1308	chr11:111473422:+	MCM3	27278	chr6:52148204:-	ONLY_REF_SPLICE	NO	43	1186	0.07	0	0.0248	0.0124	SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2,MCM3->chr6:52128807-52149679:-,minichromosome_maintenance_complex_component_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0372	FALSE	0	0	0	1	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30007	chr8:144669019:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	1	10	0	18	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC005154.6--MTDH	1	1	AC005154.6	33312	chr7:30563983:-	MTDH	50634	chr8:98735107:+	ONLY_REF_SPLICE	YES	18	530	0.1	0	0.0124	0.0124	AC005154.6->chr7:30555925-30634425:-,MTDH->chr8:98656407-98740998:+,metadherin	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.1	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BSG--DAZAP1	1	1	BSG	1283	chr19:571579:+	DAZAP1	17716	chr19:1417499:+	ONLY_REF_SPLICE	YES	12	177	0.14	0.01	0.0124	0.0124	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.14	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DTX2--SRRM3	1	1	DTX2	1161	chr7:76091153:+	SRRM3	26472	chr7:75877506:+	ONLY_REF_SPLICE	YES	22	0	0.08	1	0.0124	0.0124	DTX2->Oncogene{Bushman},chr7:76090993-76135312:+,deltex_2,_E3_ubiquitin_ligase,SRRM3->chr7:75831216-75916605:+,serine/arginine_repetitive_matrix_3	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTMR9--UNC5D	1	1	MTMR9	3429	chr8:11152811:+	UNC5D	25394	chr8:35406810:+	ONLY_REF_SPLICE	YES	34	0	0.06	1	0.0124	0.0124	MTMR9->chr8:11141925-11185646:+,myotubularin_related_protein_9,UNC5D->chr8:35092975-35654068:+,unc-5_netrin_receptor_D	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--MYC	1	1	PVT1	8346	chr8:128903244:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	121	1876	0.02	0	0.0124	0.0124	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0248	FALSE	0	5	0	7	2	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB15--CTD-2509G16.5	1	1	RAB15	1824	chr14:65438671:-	CTD-2509G16.5	17912	chr14:65714441:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0124	0.0124	RAB15->RAB15,_member_RAS_oncogene_family,chr14:65412532-65439494:-,CTD-2509G16.5->chr14:65703198-65785508:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF11--FAF1	1	1	RNF11	1609	chr1:51702551:+	FAF1	10715	chr1:51323669:-	ONLY_REF_SPLICE	YES	102	50	0.02	0.04	0.0124	0.0124	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=9;pct=0.10%;dist=Artery_-_Tibial=2,Whole_Blood=2,Ovary=1,Lung=1,Brain_-_Frontal_Cortex_(BA9)=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Urinary_Bladder=1},RNF11->chr1:51701943-51739127:+,ring_finger_protein_11,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0248	TRUE	2	2	0	2	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAF4--CHMP1A	1	1	SCAF4	16796	chr21:33057362:-	CHMP1A	27950	chr16:89713739:-	ONLY_REF_SPLICE	YES	88	170	0.02	0.01	0.0124	0.0124	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=22;pct=0.25%;dist=Small_Intestine_-_Terminal_Ileum=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Breast_-_Mammary_Tissue=1,Lung=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Brain_-_Frontal_Cortex_(BA9)=1,Uterus=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellar_Hemisphere=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Testis=1,Cells_-_Transformed_fibroblasts=1},SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0248	FALSE	8	8	2	7	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ST3GAL1--NDRG1	1	1	ST3GAL1	5010	chr8:134558017:-	NDRG1	32150	chr8:134296572:-	ONLY_REF_SPLICE	YES	246	1768	0.01	0	0.0124	0.0124	GTEx_FI:{Adipose_Tissue=[count:2=pct:0.7],Blood=[count:2=pct:1.1],Esophagus=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,NDRG1->N-myc_downstream_regulated_1,Oncogene{Bushman},chr8:134249414-134314265:-	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0248	FALSE	0	2	0	1	0	FALSE	ACH-000653
JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1752	26	0	0.07	0.0124	0.0124	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	JJN3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0248	FALSE	6	50	7	115	0	FALSE	ACH-000653
NCIH2291_LUNG	TIMM23B--LINC00843	73	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8867	0.2065	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2291_LUNG	1	1	1.0932	TRUE	508	994	45	981	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	6	196	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	20	2	0.91	0.99	0.0729	2.3808	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.91	0.99	2.4537	FALSE	344	826	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-TA--MT-TC	54	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6559	0.0486	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2291_LUNG	1	1	0.7045	FALSE	462	80	0	856	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	4	196	MT-ND4	1222	chrM:10981:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	22	0	0.9	1	0.0486	2.3808	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.9	1	2.4294	FALSE	344	827	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	4	194	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	7	2	0.97	0.99	0.0486	2.3565	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.97	0.99	2.4051	FALSE	344	826	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MAML2--TUBA3D	49	12	MAML2	2798	chr11:96074547:-	TUBA3D	16217	chr2:132235737:+	ONLY_REF_SPLICE	YES	12	0	0.84	1	0.5952	0.1458	MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,TUBA3D->chr2:132233666-132240507:+,tubulin_alpha_3d	NCIH2291_LUNG	0.84	1	0.741	TRUE	0	0	0	1	0	TRUE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	3	196	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	22	0	0.9	1	0.0364	2.3808	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.9	1	2.4172	FALSE	344	826	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	3	194	MT-ND4	1112	chrM:10871:+	MT-ND4L	5464	chrM:10555:+	INCL_NON_REF_SPLICE	YES	8	0	0.96	1	0.0364	2.3565	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.96	1	2.3929	FALSE	344	826	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	3	194	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	14	0	0.93	1	0.0364	2.3565	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.93	1	2.3929	FALSE	344	826	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	TIMM23--RP11-464F9.1	46	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	125	5	0.27	0.9	0.5587	0.0121	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2291_LUNG	0.27	0.9	0.5708	TRUE	519	3926	326	965	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	3	162	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	6	2	0.96	0.99	0.0364	1.9678	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.96	0.99	2.0042	FALSE	344	826	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	7	137	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	2	0.97	0.99	0.085	1.6641	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.97	0.99	1.7491	FALSE	344	821	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	3	139	MT-ND4	1215	chrM:10974:+	MT-ND4L	5606	chrM:10697:+	INCL_NON_REF_SPLICE	YES	23	2	0.86	0.99	0.0364	1.6884	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.86	0.99	1.7248	FALSE	344	826	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	16	69	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	5	0.98	0.94	0.1943	0.8381	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	0.94	0.98	1.0324	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND6--MT-TE	24	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2915	0.0364	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2291_LUNG	1	1	0.3279	FALSE	499	1288	110	792	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	5	70	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	4	5	0.95	0.94	0.0607	0.8503	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	0.94	0.95	0.911	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	14	33	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	5947	0	0.01	1	0.1701	0.4008	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.01	1	0.5709	FALSE	344	827	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	4	69	MT-CO3	1126	chrM:9332:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	3	5	0.96	0.94	0.0486	0.8381	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	0.94	0.96	0.8867	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	3	71	MT-CO3	1155	chrM:9361:+	MT-ATP6	5219	chrM:8961:+	INCL_NON_REF_SPLICE	YES	3	9	0.96	0.89	0.0364	0.8624	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	0.89	0.96	0.8988	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	3	71	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	2	39	0.97	0.65	0.0364	0.8624	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	0.65	0.97	0.8988	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	5	62	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	3	4	0.96	0.94	0.0607	0.7531	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	0.94	0.96	0.8138	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	3	69	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	5	0.96	0.94	0.0364	0.8381	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	0.94	0.96	0.8745	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	4	49	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	500	0	0.1	1	0.0486	0.5952	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.1	1	0.6438	FALSE	344	827	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	4	48	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0486	0.583	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.98	1	0.6316	FALSE	344	821	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	3	49	MT-ND4	1294	chrM:11053:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	51	0	0.5	1	0.0364	0.5952	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.5	1	0.6316	FALSE	344	827	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	3	48	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	15	0	0.77	1	0.0364	0.583	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.77	1	0.6194	FALSE	344	826	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	10	19	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	22	0	0.57	1	0.1215	0.2308	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.57	1	0.3523	FALSE	344	826	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	10	19	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	49	0	0.37	1	0.1215	0.2308	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.37	1	0.3523	FALSE	344	827	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND6--MT-TE	14	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1701	0.0364	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2291_LUNG	1	1	0.2065	FALSE	499	1288	110	792	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	6	33	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	22	0	0.64	1	0.0729	0.4008	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.64	1	0.4737	FALSE	344	826	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	RP11-96H19.1--RP11-446N19.1	14	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1701	0.0121	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2291_LUNG	1	1	0.1822	FALSE	515	4851	409	746	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	3	44	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	3	1	0.94	0.98	0.0364	0.5345	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	0.94	0.98	0.5709	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	7	27	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	4	1	0.89	0.97	0.085	0.328	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.89	0.97	0.413	FALSE	344	821	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	RAB10--ANAPC1P1	13	2	RAB10	1629	chr2:26257604:+	ANAPC1P1	12293	chr2:87098430:+	INCL_NON_REF_SPLICE	YES	109	0	0.12	1	0.1579	0.0243	RAB10->RAB10,_member_RAS_oncogene_family,chr2:26256976-26360323:+,ANAPC1P1->anaphase_promoting_complex_subunit_1_pseudogene_1,chr2:87098424-87149816:+	NCIH2291_LUNG	0.12	1	0.1822	TRUE	0	0	0	1	0	TRUE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	3	41	MT-CO3	1036	chrM:9242:+	MT-ATP6	4744	chrM:8486:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0364	0.498	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	0.98	1	0.5344	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	5	31	MT-ND4	1192	chrM:10951:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	20	0	0.64	1	0.0607	0.3765	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.64	1	0.4372	FALSE	344	826	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	RP11-123O10.4--GRIP1	11	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1336	0.0486	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2291_LUNG	1	1	0.1822	FALSE	416	2512	207	587	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	11	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.81	1	0.1336	0.0243	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	0.81	1	0.1579	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	RP11-96H19.1--RP11-446N19.1	10	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1215	0.0486	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2291_LUNG	1	1	0.1701	FALSE	407	2205	196	549	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ATP6--MT-CO2	10	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	25	2	0.34	0.87	0.1215	0.0364	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2291_LUNG	0.34	0.87	0.1579	FALSE	59	21	0	114	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	7	13	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	3	0	0.87	1	0.085	0.1579	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	0.87	1	0.2429	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	10	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1215	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	1	1	0.1215	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-TA--MT-TC	8	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0972	0.0364	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2291_LUNG	1	1	0.1336	FALSE	462	80	0	856	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	3	21	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.0364	0.2551	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	0.89	1	0.2915	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	8	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.0972	0.0121	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.69	1	0.1093	FALSE	344	821	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	8	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0972	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	1	1	0.0972	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ATP6--MT-CO2	7	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	25	2	0.29	0.83	0.085	0.0364	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2291_LUNG	0.29	0.83	0.1214	FALSE	59	21	0	114	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND6--MT-TE	6	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0729	0.085	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2291_LUNG	1	1	0.1579	FALSE	499	1288	110	792	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND6--MT-TE	3	19	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.2308	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2291_LUNG	1	1	0.2672	FALSE	499	1288	110	792	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	3	17	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	1	2	0.95	0.91	0.0364	0.2065	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.91	0.95	0.2429	FALSE	344	821	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	C15orf57--CBX3	7	0	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.085	0	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2291_LUNG	1	1	0.085	TRUE	267	562	48	632	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ATP6--MT-CO1	7	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.085	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2291_LUNG	1	1	0.085	FALSE	183	104	9	328	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-CO2	6	4	MT-ND4	1222	chrM:10981:+	MT-CO2	5514	chrM:7721:+	INCL_NON_REF_SPLICE	YES	9749	5447	0	0	0.0729	0.0486	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2291_LUNG	0	0	0.1215	FALSE	5	1	0	19	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	7	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.085	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	1	1	0.085	FALSE	344	821	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-CO2	5	4	MT-ND4	1214	chrM:10973:+	MT-CO2	5506	chrM:7713:+	INCL_NON_REF_SPLICE	YES	9700	3724	0	0	0.0607	0.0486	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2291_LUNG	0	0	0.1093	FALSE	5	1	0	19	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ATP6--MT-CO2	5	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	25	2	0.24	0.8	0.0607	0.0364	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2291_LUNG	0.24	0.8	0.0971	FALSE	59	21	0	114	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	5	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.8	0.0607	0.0364	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.8	1	0.0971	FALSE	344	821	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	BCRP8--YWHAH	5	1	BCRP8	1361	chr22:23522105:-	YWHAH	8806	chr22:32352126:+	ONLY_REF_SPLICE	YES	0	420	1	0.01	0.0607	0.0121	BCRP8->breakpoint_cluster_region_pseudogene_8,chr22:23522058-23522465:-,YWHAH->chr22:32340447-32353590:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_eta	NCIH2291_LUNG	0.01	1	0.0728	FALSE	0	0	0	1	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ATP6--MT-CO2	5	1	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	19	2	0.24	0.75	0.0607	0.0121	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2291_LUNG	0.24	0.75	0.0728	FALSE	59	21	0	114	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-CO2	3	9	MT-ND4	1984	chrM:11743:+	MT-CO2	5584	chrM:7791:+	INCL_NON_REF_SPLICE	YES	11351	11309	0	0	0.0364	0.1093	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2291_LUNG	0	0	0.1457	FALSE	5	1	0	19	0	FALSE	ACH-000718
NCIH2291_LUNG	FTH1--ACTB	5	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH2291_LUNG	1	1	0.0607	TRUE	1	0	0	97	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	5	0	MT-CO3	1063	chrM:9269:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	1	1	0.0607	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2291_LUNG	1	1	0.0607	FALSE	462	80	0	856	0	FALSE	ACH-000718
NCIH2291_LUNG	RP11-120D5.1--MID1	5	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0607	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2291_LUNG	1	1	0.0607	FALSE	16	356	14	466	0	FALSE	ACH-000718
NCIH2291_LUNG	SLC1A5--MT-ND4L	4	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	241	0	0.02	1	0.0486	0.0121	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	0.02	1	0.0607	FALSE	0	0	0	189	0	FALSE	ACH-000718
NCIH2291_LUNG	KRT7--P4HB	4	0	KRT7	5529	chr12:52632508:+	P4HB	18785	chr17:79817165:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	KRT7->chr12:52626304-52645970:+,keratin_7,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	NCIH2291_LUNG	1	1	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000718
NCIH2291_LUNG	KRT7--TUBA1C	4	0	KRT7	1809	chr12:52627112:+	TUBA1C	26832	chr12:49666110:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	KRT7->chr12:52626304-52645970:+,keratin_7,TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c	NCIH2291_LUNG	1	1	0.0486	TRUE	0	0	0	4	0	TRUE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	1	1	0.0486	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	3	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0364	0.0486	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	0.78	1	0.085	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	1	1	0.0486	FALSE	344	821	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2291_LUNG	1	1	0.0486	FALSE	499	1288	110	792	0	FALSE	ACH-000718
NCIH2291_LUNG	VCL--RP11-574K11.8	4	0	VCL	2333	chr10:75802911:+	RP11-574K11.8	30958	chr10:75606093:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0	VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,RP11-574K11.8->chr10:75601591-75606324:+	NCIH2291_LUNG	1	1	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000718
NCIH2291_LUNG	MT-CO3--MT-ATP6	3	3	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0364	0.0364	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2291_LUNG	0.6	1	0.0728	FALSE	189	492	56	216	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-CO2	3	3	MT-ND4	1215	chrM:10974:+	MT-CO2	5660	chrM:7867:+	INCL_NON_REF_SPLICE	YES	9630	14473	0	0	0.0364	0.0364	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2291_LUNG	0	0	0.0728	FALSE	5	1	0	19	0	FALSE	ACH-000718
NCIH2291_LUNG	POR--PTPN12	3	3	POR	13293	chr7:75601779:+	PTPN12	29879	chr7:77200395:+	ONLY_REF_SPLICE	YES	139	54	0.04	0.1	0.0364	0.0364	POR->chr7:75528518-75616173:+,cytochrome_p450_oxidoreductase,PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12	NCIH2291_LUNG	0.04	0.1	0.0728	TRUE	0	0	0	1	0	FALSE	ACH-000718
NCIH2291_LUNG	CTD-2152M20.2--GOLPH3	3	2	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	47	1	0.1	0.0364	0.0243	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	NCIH2291_LUNG	0.1	1	0.0607	TRUE	10	26	2	24	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ATP6--MT-CO2	3	2	MT-ATP6	1516	chrM:9042:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	3	6	0.62	0.45	0.0364	0.0243	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2291_LUNG	0.45	0.62	0.0607	FALSE	59	21	0	114	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ATP6--MT-CO2	3	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	20	2	0.17	0.67	0.0364	0.0121	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2291_LUNG	0.17	0.67	0.0485	FALSE	59	21	0	114	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ATP6--MT-CO2	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	11	2	0.27	0.67	0.0364	0.0121	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2291_LUNG	0.27	0.67	0.0485	FALSE	59	21	0	114	0	FALSE	ACH-000718
NCIH2291_LUNG	RPSAP52--HMGA2	3	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	4	57	0.5	0.07	0.0364	0.0121	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	NCIH2291_LUNG	0.07	0.5	0.0485	FALSE	0	59	0	125	0	FALSE	ACH-000718
NCIH2291_LUNG	VDAC3--ZMAT4	3	1	VDAC3	6728	chr8:42256382:+	ZMAT4	22154	chr8:40625249:-	ONLY_REF_SPLICE	YES	116	0	0.03	1	0.0364	0.0121	VDAC3->chr8:42249142-42263415:+,voltage_dependent_anion_channel_3,ZMAT4->chr8:40388109-40755352:-,zinc_finger_matrin-type_4	NCIH2291_LUNG	0.03	1	0.0485	TRUE	0	0	0	1	0	FALSE	ACH-000718
NCIH2291_LUNG	FTH1--ACTB	3	0	FTH1	1148	chr11:61734985:-	ACTB	12968	chr7:5568855:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH2291_LUNG	1	1	0.0364	TRUE	0	0	0	8	0	TRUE	ACH-000718
NCIH2291_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1072	chrM:8598:+	MT-CO1	5867	chrM:7089:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2291_LUNG	1	1	0.0364	FALSE	183	104	9	328	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2291_LUNG	1	1	0.0364	FALSE	183	104	9	328	0	FALSE	ACH-000718
NCIH2291_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2291_LUNG	1	1	0.0364	FALSE	344	821	44	306	0	FALSE	ACH-000718
NCIH2291_LUNG	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0121	0.0729	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2291_LUNG	0.88	1	0.085	FALSE	192	492	57	212	0	FALSE	ACH-000718
NCIH2291_LUNG	ITGA2--ITGA1	2	1	ITGA2	1207	chr5:52285362:+	ITGA1	66367	chr5:52225455:+	ONLY_REF_SPLICE	YES	213	18	0.01	0.14	0.0243	0.0121	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[30116],ITGA2->chr5:52285156-52390609:+,integrin_subunit_alpha_2,ITGA1->chr5:52083730-52255040:+,integrin_subunit_alpha_1	NCIH2291_LUNG	0.01	0.14	0.0364	FALSE	0	0	0	1	0	FALSE	ACH-000718
NCIH2291_LUNG	VDAC3--ZMAT4	2	1	VDAC3	7567	chr8:42257221:+	ZMAT4	22154	chr8:40625249:-	ONLY_REF_SPLICE	YES	101	0	0.03	1	0.0243	0.0121	VDAC3->chr8:42249142-42263415:+,voltage_dependent_anion_channel_3,ZMAT4->chr8:40388109-40755352:-,zinc_finger_matrin-type_4	NCIH2291_LUNG	0.03	1	0.0364	TRUE	0	0	0	1	0	FALSE	ACH-000718
NCIH2291_LUNG	AKAP13--PDE8A	2	0	AKAP13	11544	chr15:86087186:+	PDE8A	69389	chr15:85607601:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	{Klijn_CCL:Breast=1},AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	NCIH2291_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000718
NCIH2291_LUNG	RP1-43E13.2--CAPZB	2	0	RP1-43E13.2	1059	chr1:19537053:+	CAPZB	10088	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	LOCAL_INVERSION:+:-:[98069],RP1-43E13.2->chr1:19536995-19567198:+,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	NCIH2291_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000718
NCIH2291_LUNG	USP4--RHOA	2	0	USP4	2917	chr3:49372902:-	RHOA	35012	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[18433],USP4->Oncogene{Bushman},chr3:49315264-49378145:-,ubiquitin_specific_peptidase_4,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	NCIH2291_LUNG	1	1	0.0243	TRUE	0	2	0	2	2	TRUE	ACH-000718
DU145_PROSTATE	C14orf166--SLC25A21	667	331	C14orf166	7469	chr14:52468584:+	SLC25A21	22129	chr14:37180687:-	ONLY_REF_SPLICE	YES	431	3	0.7	1	10.4651	5.1933	{Klijn_CCL:Other=1},C14orf166->chr14:52456193-52471420:+,chromosome_14_open_reading_frame_166,SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21	DU145_PROSTATE	0.7	1	15.6584	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	UBE2L3--KRAS	192	99	UBE2L3	5318	chr22:21965332:+	KRAS	13025	chr12:25398329:-	ONLY_REF_SPLICE	YES	294	17	0.5	0.94	3.0125	1.5533	Cosmic{samples=1,mutations=1,papers=1},{Klijn_CCL:Other=1},UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-	DU145_PROSTATE	0.5	0.94	4.5658	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	LDLR--RPL31P11	124	42	LDLR	13239	chr19:11224438:+	RPL31P11	27084	chr1:161655000:-	INCL_NON_REF_SPLICE	YES	42	0	0.8	1	1.9455	0.659	LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,RPL31P11->chr1:161653485-161655042:-,ribosomal_protein_L31_pseudogene_11	DU145_PROSTATE	0.8	1	2.6045	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	C14orf166--SLC25A21	3	176	C14orf166	6323	chr14:52466514:+	SLC25A21	22129	chr14:37180687:-	ONLY_REF_SPLICE	YES	323	3	0.36	0.98	0.0471	2.7614	{Klijn_CCL:Other=1},C14orf166->chr14:52456193-52471420:+,chromosome_14_open_reading_frame_166,SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21	DU145_PROSTATE	0.36	0.98	2.8085	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	TIMM23B--LINC00843	38	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.5962	0.1726	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DU145_PROSTATE	0.98	1	0.7688	TRUE	508	994	45	981	0	FALSE	ACH-000979
DU145_PROSTATE	MT-ND6--MT-TE	26	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4079	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DU145_PROSTATE	1	1	0.4079	FALSE	499	1288	110	792	0	FALSE	ACH-000979
DU145_PROSTATE	C14orf166--SLC25A21	2	66	C14orf166	7469	chr14:52468584:+	SLC25A21	23295	chr14:37154130:-	ONLY_REF_SPLICE	YES	431	277	0.14	0.2	0.0314	1.0355	{Klijn_CCL:Other=1},C14orf166->chr14:52456193-52471420:+,chromosome_14_open_reading_frame_166,SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21	DU145_PROSTATE	0.14	0.2	1.0669	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	MT-ND6--MT-TE	17	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2667	0.0471	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DU145_PROSTATE	1	1	0.3138	FALSE	499	1288	110	792	0	FALSE	ACH-000979
DU145_PROSTATE	MT-TA--MT-TC	16	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.251	0.0314	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DU145_PROSTATE	1	1	0.2824	FALSE	462	80	0	856	0	FALSE	ACH-000979
DU145_PROSTATE	TIMM23--RP11-464F9.1	15	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	215	2	0.07	0.89	0.2353	0.0314	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DU145_PROSTATE	0.07	0.89	0.2667	TRUE	519	3926	326	965	0	FALSE	ACH-000979
DU145_PROSTATE	MT-ND4--MT-ND4L	6	31	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0941	0.4864	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DU145_PROSTATE	0.97	1	0.5805	FALSE	344	821	44	306	0	FALSE	ACH-000979
DU145_PROSTATE	MT-ND6--MT-TE	10	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1569	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DU145_PROSTATE	1	1	0.1569	FALSE	499	1288	110	792	0	FALSE	ACH-000979
DU145_PROSTATE	NPM1P24--SET	10	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1569	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DU145_PROSTATE	1	1	0.1569	TRUE	0	0	0	434	0	FALSE	ACH-000979
DU145_PROSTATE	UBE2L3--KRAS	1	35	UBE2L3	5318	chr22:21965332:+	KRAS	16555	chr12:25380346:-	ONLY_REF_SPLICE	YES	294	52	0.11	0.41	0.0157	0.5491	Cosmic{samples=1,mutations=1,papers=1},{Klijn_CCL:Other=1},UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-	DU145_PROSTATE	0.11	0.41	0.5648	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	MT-ND6--MT-TE	7	4	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1098	0.0628	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DU145_PROSTATE	1	1	0.1726	FALSE	499	1288	110	792	0	FALSE	ACH-000979
DU145_PROSTATE	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1255	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DU145_PROSTATE	1	1	0.1255	FALSE	462	80	0	856	0	FALSE	ACH-000979
DU145_PROSTATE	MT-ND4--MT-ND4L	5	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0784	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DU145_PROSTATE	1	1	0.0784	FALSE	344	821	44	306	0	FALSE	ACH-000979
DU145_PROSTATE	MT-ND6--MT-TE	4	4	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0628	0.0628	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DU145_PROSTATE	1	1	0.1256	FALSE	499	1288	110	792	0	FALSE	ACH-000979
DU145_PROSTATE	DPY19L2P2--DNAJC2	3	1	DPY19L2P2	13218	chr7:102881009:-	DNAJC2	34930	chr7:102982401:-	ONLY_REF_SPLICE	YES	2	82	0.67	0.05	0.0471	0.0157	LOCAL_REARRANGEMENT:-:[32064],DPY19L2P2->DPY19L2_pseudogene_2,chr7:102815580-102920857:-,DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-	DU145_PROSTATE	0.05	0.67	0.0628	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	MT-ND4--MT-ND4L	3	1	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	29	0	0.12	1	0.0471	0.0157	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DU145_PROSTATE	0.12	1	0.0628	FALSE	344	827	44	306	0	FALSE	ACH-000979
DU145_PROSTATE	RP11-175P13.3--ANKS1B	3	1	RP11-175P13.3	6913	chr12:100570821:-	ANKS1B	12954	chr12:100219167:-	ONLY_REF_SPLICE	YES	4	2	0.5	0.67	0.0471	0.0157	RP11-175P13.3->chr12:100566974-100593561:-,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	DU145_PROSTATE	0.5	0.67	0.0628	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	RP11-123O10.4--GRIP1	2	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0.0628	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DU145_PROSTATE	1	1	0.0942	FALSE	416	2512	207	587	0	FALSE	ACH-000979
DU145_PROSTATE	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.71	0.83	0.0314	0.0471	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DU145_PROSTATE	0.71	0.83	0.0785	FALSE	515	4851	409	746	0	FALSE	ACH-000979
DU145_PROSTATE	AFG3L2--IFIT5	2	0	AFG3L2	14094	chr18:12344131:-	IFIT5	25279	chr10:91176962:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	AFG3L2->AFG3_like_matrix_AAA_peptidase_subunit_2,chr18:12328943-12377313:-,IFIT5->chr10:91174343-91180758:+,interferon_induced_protein_with_tetratricopeptide_repeats_5	DU145_PROSTATE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	MFGE8--DYNC2H1	2	0	MFGE8	7145	chr15:89448988:-	DYNC2H1	101327	chr11:103270391:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	MFGE8->chr15:89441916-89456642:-,milk_fat_globule-EGF_factor_8_protein,DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1	DU145_PROSTATE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DU145_PROSTATE	1	1	0.0314	FALSE	292	1546	117	613	0	FALSE	ACH-000979
DU145_PROSTATE	POLE2--PPP1CC	2	0	POLE2	3464	chr14:50146443:-	PPP1CC	24621	chr12:111169706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	POLE2->chr14:50110273-50155140:-,polymerase_(DNA)_epsilon_2,_accessory_subunit,PPP1CC->Oncogene{Bushman},chr12:111157485-111180744:-,protein_phosphatase_1_catalytic_subunit_gamma	DU145_PROSTATE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DU145_PROSTATE	1	1	0.0314	TRUE	465	1949	224	605	0	FALSE	ACH-000979
DU145_PROSTATE	UBAP2L--AC008067.2	2	0	UBAP2L	23719	chr1:154234173:+	AC008067.2	35188	chr2:80840119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like,AC008067.2->chr2:80802238-80845902:-	DU145_PROSTATE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000979
DU145_PROSTATE	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	18	0	0.18	1	0.0157	0.0471	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DU145_PROSTATE	0.18	1	0.0628	FALSE	164	806	69	479	0	FALSE	ACH-000979
DU145_PROSTATE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	2	0	0.67	1	0.0157	0.0471	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DU145_PROSTATE	0.67	1	0.0628	FALSE	275	511	55	178	0	FALSE	ACH-000979
DU145_PROSTATE	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0157	0.0314	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DU145_PROSTATE	1	1	0.0471	FALSE	93	270	15	244	0	FALSE	ACH-000979
IGR37_SKIN	SSH2--STK11	88	64	SSH2	1339	chr17:28256956:-	STK11	40377	chr19:1218416:+	ONLY_REF_SPLICE	YES	89	2	0.63	0.99	0.8998	0.6544	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	IGR37_SKIN	0.63	0.99	1.5542	TRUE	0	0	0	2	0	TRUE	ACH-000650
IGR37_SKIN	SSH2--STK11	45	79	SSH2	5062	chr17:28175867:-	STK11	40377	chr19:1218416:+	ONLY_REF_SPLICE	YES	11	2	0.92	0.98	0.4601	0.8078	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	IGR37_SKIN	0.92	0.98	1.2679	TRUE	0	0	0	2	0	TRUE	ACH-000650
IGR37_SKIN	TIMM23B--LINC00843	40	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.409	0.2659	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	IGR37_SKIN	1	1	0.6749	TRUE	508	994	45	981	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND6--MT-TE	45	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4601	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR37_SKIN	1	1	0.4601	FALSE	499	1288	110	792	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND6--MT-TE	35	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3579	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR37_SKIN	1	1	0.3579	FALSE	499	1288	110	792	0	FALSE	ACH-000650
IGR37_SKIN	EFTUD1--CTD-2034I4.2	32	8	EFTUD1	1150	chr15:82554955:-	CTD-2034I4.2	33406	chr15:81980751:+	ONLY_REF_SPLICE	YES	2	0	0.95	1	0.3272	0.0818	EFTUD1->chr15:82422571-82555104:-,CTD-2034I4.2->chr15:81846344-81989121:+	IGR37_SKIN	0.95	1	0.409	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	TBL1X--WWC3	26	25	TBL1X	9851	chrX:9622362:+	WWC3	35204	chrX:10058811:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2659	0.2556	TBL1X->chrX:9431335-9687780:+,transducin_(beta)-like_1X-linked,WWC3->WWC_family_member_3,chrX:9983602-10112518:+	IGR37_SKIN	1	1	0.5215	TRUE	0	0	0	2	0	TRUE	ACH-000650
IGR37_SKIN	MT-TA--MT-TC	30	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3068	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IGR37_SKIN	1	1	0.3068	FALSE	462	80	0	856	0	FALSE	ACH-000650
IGR37_SKIN	SSH2--STK11	5	90	SSH2	5062	chr17:28175867:-	STK11	39246	chr19:1216267:+	ONLY_REF_SPLICE	YES	11	0	0.9	1	0.0511	0.9203	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	IGR37_SKIN	0.9	1	0.9714	TRUE	0	0	0	2	0	TRUE	ACH-000650
IGR37_SKIN	SSH2--STK11	7	72	SSH2	1339	chr17:28256956:-	STK11	39246	chr19:1216267:+	ONLY_REF_SPLICE	YES	89	0	0.47	1	0.0716	0.7362	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11	IGR37_SKIN	0.47	1	0.8078	TRUE	0	0	0	2	0	TRUE	ACH-000650
IGR37_SKIN	C15orf57--CBX3	20	15	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	91	51	0.28	0.41	0.2045	0.1534	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	IGR37_SKIN	0.28	0.41	0.3579	TRUE	267	562	48	632	0	FALSE	ACH-000650
IGR37_SKIN	TIMM23--RP11-464F9.1	23	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	293	4	0.08	0.86	0.2352	0.0102	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	IGR37_SKIN	0.08	0.86	0.2454	TRUE	519	3926	326	965	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND6--MT-TE	23	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2352	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR37_SKIN	1	1	0.2352	FALSE	499	1288	110	792	0	FALSE	ACH-000650
IGR37_SKIN	MT-TA--MT-TC	18	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1841	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IGR37_SKIN	1	1	0.1841	FALSE	462	80	0	856	0	FALSE	ACH-000650
IGR37_SKIN	HDGFRP3--RP13-996F3.3	15	4	HDGFRP3	9055	chr15:83819967:-	RP13-996F3.3	16727	chr15:83146651:-	ONLY_REF_SPLICE	YES	134	39	0.12	0.33	0.1534	0.0409	HDGFRP3->chr15:83784320-83876770:-,RP13-996F3.3->chr15:83141718-83182928:-	IGR37_SKIN	0.12	0.33	0.1943	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	MT-ND4--MT-ND4L	9	27	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	8	0	0.82	1	0.092	0.2761	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR37_SKIN	0.82	1	0.3681	FALSE	344	821	44	306	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND4--MT-ND4L	3	47	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	NO	27	0	0.65	1	0.0307	0.4806	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR37_SKIN	0.65	1	0.5113	FALSE	344	826	44	306	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND4--MT-ND4L	14	2	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	75	0	0.18	1	0.1432	0.0205	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR37_SKIN	0.18	1	0.1637	FALSE	344	827	44	306	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND4--MT-ND4L	3	42	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	9	0	0.83	1	0.0307	0.4295	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR37_SKIN	0.83	1	0.4602	FALSE	344	826	44	306	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND6--MT-TE	11	1	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.1125	0.0102	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR37_SKIN	0.86	1	0.1227	FALSE	499	1288	110	792	0	FALSE	ACH-000650
IGR37_SKIN	RP11-444D3.1--SOX5	10	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	10	1	0.57	0.1023	0.0307	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	IGR37_SKIN	0.57	1	0.133	TRUE	477	1352	189	275	0	FALSE	ACH-000650
IGR37_SKIN	MT-CO3--MT-ATP6	10	0	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1023	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	IGR37_SKIN	1	1	0.1023	FALSE	189	492	56	216	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND4--MT-ND4L	9	4	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	6	0	0.68	1	0.092	0.0409	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR37_SKIN	0.68	1	0.1329	FALSE	344	821	44	306	0	FALSE	ACH-000650
IGR37_SKIN	NRIP1--AF127936.7	9	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.092	0.0102	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	IGR37_SKIN	1	1	0.1022	FALSE	292	1546	117	613	0	FALSE	ACH-000650
IGR37_SKIN	MT-CO3--MT-ATP6	9	0	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.092	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	IGR37_SKIN	1	1	0.092	FALSE	189	492	56	216	0	FALSE	ACH-000650
IGR37_SKIN	ERC1--WNT5B	8	3	ERC1	18824	chr12:1299218:+	WNT5B	51638	chr12:1740464:+	ONLY_REF_SPLICE	YES	23	0	0.32	1	0.0818	0.0307	NEIGHBORS[33958],ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,WNT5B->Wnt_family_member_5B,chr12:1639057-1756409:+	IGR37_SKIN	0.32	1	0.1125	FALSE	0	0	0	2	0	FALSE	ACH-000650
IGR37_SKIN	MT-CO3--MT-ATP6	8	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0818	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	IGR37_SKIN	1	1	0.0818	FALSE	189	492	56	216	0	FALSE	ACH-000650
IGR37_SKIN	NRIP1--AF127936.7	7	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.41	1	0.0716	0.0205	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	IGR37_SKIN	0.41	1	0.0921	FALSE	164	806	69	479	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND3--MT-CO3	7	1	MT-ND3	1064	chrM:10122:+	MT-CO3	5089	chrM:9949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0716	0.0102	LOCAL_REARRANGEMENT:+:[69],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	IGR37_SKIN	1	1	0.0818	FALSE	2	2	0	11	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND3--MT-CO3	7	1	MT-ND3	1249	chrM:10307:+	MT-CO3	4505	chrM:9365:+	INCL_NON_REF_SPLICE	YES	0	35	1	0.19	0.0716	0.0102	LOCAL_REARRANGEMENT:+:[69],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	IGR37_SKIN	0.19	1	0.0818	FALSE	2	2	0	11	0	FALSE	ACH-000650
IGR37_SKIN	MT-CO3--MT-ATP6	7	0	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0716	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	IGR37_SKIN	1	1	0.0716	FALSE	189	492	56	216	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND4--MT-ATP8	7	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0716	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR37_SKIN	1	1	0.0716	FALSE	230	193	14	283	0	FALSE	ACH-000650
IGR37_SKIN	FAM154B--RP11-152F13.7	6	3	FAM154B	1123	chr15:82555273:+	RP11-152F13.7	13317	chr15:82969811:+	ONLY_REF_SPLICE	YES	3	44	0.75	0.17	0.0614	0.0307	FAM154B->chr15:82555151-82577271:+,RP11-152F13.7->chr15:82944773-82974312:+	IGR37_SKIN	0.17	0.75	0.0921	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	HDGFRP3--RP13-996F3.3	6	3	HDGFRP3	9055	chr15:83819967:-	RP13-996F3.3	17071	chr15:83146307:-	ONLY_REF_SPLICE	YES	134	58	0.06	0.13	0.0614	0.0307	HDGFRP3->chr15:83784320-83876770:-,RP13-996F3.3->chr15:83141718-83182928:-	IGR37_SKIN	0.06	0.13	0.0921	TRUE	0	0	0	1	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND4--MT-ND4L	4	11	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	825	0	0.02	1	0.0409	0.1125	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR37_SKIN	0.02	1	0.1534	FALSE	344	827	44	306	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND6--MT-TE	6	1	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.0614	0.0102	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR37_SKIN	0.7	1	0.0716	FALSE	499	1288	110	792	0	FALSE	ACH-000650
IGR37_SKIN	C15orf57--CBX3	3	12	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	89	52	0.14	0.22	0.0307	0.1227	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	IGR37_SKIN	0.14	0.22	0.1534	TRUE	267	562	48	632	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND4--MT-ND4L	6	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0614	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR37_SKIN	1	1	0.0614	FALSE	344	821	44	306	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND4--MT-ND4L	5	3	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	36	0	0.18	1	0.0511	0.0307	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR37_SKIN	0.18	1	0.0818	FALSE	344	826	44	306	0	FALSE	ACH-000650
IGR37_SKIN	FAM101A--RP11-114H23.2	5	1	FAM101A	6449	chr12:124780182:+	RP11-114H23.2	14613	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0511	0.0102	FAM101A->chr12:124457788-124800570:+,family_with_sequence_similarity_101_member_A,RP11-114H23.2->chr12:76087790-76092596:-	IGR37_SKIN	1	1	0.0613	TRUE	0	0	0	2	0	TRUE	ACH-000650
IGR37_SKIN	NRIP1--AF127936.7	5	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.5	1	0.0511	0.0102	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	IGR37_SKIN	0.5	1	0.0613	FALSE	125	705	46	456	0	FALSE	ACH-000650
IGR37_SKIN	PMEL--MICAL1	5	1	PMEL	10301	chr12:56349384:-	MICAL1	19506	chr6:109773786:-	INCL_NON_REF_SPLICE	NO	11251	474	0	0.01	0.0511	0.0102	PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein,MICAL1->chr6:109765265-109787171:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_1	IGR37_SKIN	0	0.01	0.0613	FALSE	0	0	0	1	0	FALSE	ACH-000650
IGR37_SKIN	GNL1--GALNT2	5	0	GNL1	12394	chr6:30510182:-	GALNT2	26581	chr1:230384985:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	GNL1->G_protein_nucleolar_1_(putative),chr6:30509154-30524951:-,GALNT2->chr1:230193536-230417870:+,polypeptide_N-acetylgalactosaminyltransferase_2	IGR37_SKIN	1	1	0.0511	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	MT-ATP6--MT-CO1	5	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR37_SKIN	1	1	0.0511	FALSE	183	104	9	328	0	FALSE	ACH-000650
IGR37_SKIN	MT-CO3--MT-ATP6	4	2	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	37	8	0.14	0.43	0.0409	0.0205	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	IGR37_SKIN	0.14	0.43	0.0614	FALSE	189	492	56	216	0	FALSE	ACH-000650
IGR37_SKIN	CHSY3--HSPA8P4	4	1	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	17	0	0.23	1	0.0409	0.0102	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	IGR37_SKIN	0.23	1	0.0511	FALSE	89	26	1	44	0	FALSE	ACH-000650
IGR37_SKIN	MT-CO3--MT-ATP6	4	1	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	2	8	0.71	0.38	0.0409	0.0102	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	IGR37_SKIN	0.38	0.71	0.0511	FALSE	189	492	56	216	0	FALSE	ACH-000650
IGR37_SKIN	SRSF4--EPB41	4	1	SRSF4	2479	chr1:29495015:-	EPB41	39396	chr1:29438880:+	ONLY_REF_SPLICE	YES	110	94	0.04	0.05	0.0409	0.0102	LOCAL_INVERSION:-:+:[27702],SRSF4->chr1:29474255-29508499:-,serine/arginine-rich_splicing_factor_4,EPB41->chr1:29213603-29446553:+,erythrocyte_membrane_protein_band_4.1	IGR37_SKIN	0.04	0.05	0.0511	TRUE	0	0	0	1	0	FALSE	ACH-000650
IGR37_SKIN	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	IGR37_SKIN	1	1	0.0409	FALSE	189	492	56	216	0	FALSE	ACH-000650
IGR37_SKIN	MT-CO3--MT-ATP6	4	0	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	IGR37_SKIN	1	1	0.0409	FALSE	189	492	56	216	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND4--MT-ND4L	4	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR37_SKIN	1	1	0.0409	FALSE	344	821	44	306	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR37_SKIN	1	1	0.0409	FALSE	499	1288	110	792	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND4--MT-ATP8	3	1	MT-ND4	1386	chrM:11145:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	20132	7	0	0.36	0.0307	0.0102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR37_SKIN	0	0.36	0.0409	FALSE	231	217	16	283	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND4--MT-ATP8	3	1	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	21908	904	0	0	0.0307	0.0102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR37_SKIN	0	0	0.0409	FALSE	231	217	16	283	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND6--MT-TE	3	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0307	0.0102	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR37_SKIN	0.8	1	0.0409	FALSE	499	1288	110	792	0	FALSE	ACH-000650
IGR37_SKIN	RP1-34H18.1--NAV3	3	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0307	0.0102	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	IGR37_SKIN	1	1	0.0409	TRUE	254	575	65	124	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR37_SKIN	1	1	0.0307	FALSE	499	1288	110	792	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR37_SKIN	1	1	0.0307	FALSE	499	1288	110	792	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR37_SKIN	1	1	0.0307	FALSE	499	1288	110	792	0	FALSE	ACH-000650
IGR37_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR37_SKIN	1	1	0.0307	FALSE	499	1288	110	792	0	FALSE	ACH-000650
IGR37_SKIN	MT-TA--MT-TC	3	0	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IGR37_SKIN	1	1	0.0307	FALSE	462	80	0	856	0	FALSE	ACH-000650
IGR37_SKIN	MT-TA--MT-TC	3	0	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IGR37_SKIN	1	1	0.0307	FALSE	462	80	0	856	0	FALSE	ACH-000650
IGR37_SKIN	ERC1--WNT5B	2	3	ERC1	20371	chr12:1313678:+	WNT5B	51638	chr12:1740464:+	ONLY_REF_SPLICE	YES	26	0	0.16	1	0.0205	0.0307	NEIGHBORS[33958],ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,WNT5B->Wnt_family_member_5B,chr12:1639057-1756409:+	IGR37_SKIN	0.16	1	0.0512	FALSE	0	0	0	1	0	FALSE	ACH-000650
IGR37_SKIN	WDR4--NDUFV3	2	2	WDR4	3784	chr21:44293661:-	NDUFV3	25452	chr21:44328974:+	ONLY_REF_SPLICE	YES	281	134	0.01	0.03	0.0205	0.0205	LOCAL_INVERSION:-:+:[76],WDR4->WD_repeat_domain_4,chr21:44263204-44299678:-,NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+	IGR37_SKIN	0.01	0.03	0.041	FALSE	0	0	0	1	0	FALSE	ACH-000650
IGR37_SKIN	AC073130.3--TES	2	0	AC073130.3	2183	chr7:115895172:-	TES	16862	chr7:115897348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	NEIGHBORS_OVERLAP:-:+:[20854],AC073130.3->chr7:115877983-115967950:-,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	IGR37_SKIN	1	1	0.0205	FALSE	0	1	0	1	0	FALSE	ACH-000650
IGR37_SKIN	AKT3--CEP170	2	0	AKT3	3500	chr1:244006427:-	CEP170	40024	chr1:243388623:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	{Klijn_CCL:Head-Neck=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	2	0	TRUE	ACH-000650
IGR37_SKIN	BACE2--MBP	2	0	BACE2	5797	chr21:42608591:+	MBP	45727	chr18:74702016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	BACE2->beta-site_APP-cleaving_enzyme_2,chr21:42539728-42654445:+,MBP->chr18:74690783-74845639:-,myelin_basic_protein	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	C22orf39--UBOX5	2	0	C22orf39	1855	chr22:19434901:-	UBOX5	37835	chr20:3096112:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,UBOX5->U-box_domain_containing_5,chr20:3088219-3140842:-	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	DEXI--GTSE1	2	0	DEXI	4396	chr16:11023074:-	GTSE1	8362	chr22:46693277:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	DEXI->Dexi_homolog,chr16:11022748-11036317:-,GTSE1->G2_and_S-phase_expressed_1,chr22:46692638-46726707:+	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	DUSP10--RP11-400N13.3	2	0	DUSP10	3050	chr1:221912276:-	RP11-400N13.3	13554	chr1:222232020:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	DUSP10->Oncogene{Bushman},chr1:221874766-221915518:-,dual_specificity_phosphatase_10,RP11-400N13.3->chr1:222215047-222238105:-	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	HIATL2--METTL2A	2	0	HIATL2	4609	chr9:99711837:-	METTL2A	20370	chr17:60522198:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	HIATL2->chr9:99660348-99775862:-,METTL2A->chr17:60501228-60527454:+,methyltransferase_like_2A	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	HSF4--SCYL1	2	0	HSF4	3246	chr16:67199533:+	SCYL1	20536	chr11:65305913:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	HSF4->chr16:67197288-67203848:+,heat_shock_transcription_factor_4,SCYL1->Oncogene{Bushman},SCY1_like_pseudokinase_1,chr11:65292548-65306175:+	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	ITSN1--ANKRD28	2	0	ITSN1	1314	chr21:35015019:+	ANKRD28	86700	chr3:15751243:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	ITSN1->chr21:35014706-35272165:+,intersectin_1,ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	KMT2E--PMPCA	2	0	KMT2E	8894	chr7:104707254:+	PMPCA	38738	chr9:139311403:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,PMPCA->chr9:139305110-139318213:+,peptidase,_mitochondrial_processing_alpha_subunit	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	NELFA--NDUFS3	2	0	NELFA	10905	chr4:1993271:-	NDUFS3	27996	chr11:47603640:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	NELFA->chr4:1984441-2043630:-,negative_elongation_factor_complex_member_A,NDUFS3->NADH:ubiquinone_oxidoreductase_core_subunit_S3,chr11:47586888-47606114:+	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	PHLPP1--ADNP2	2	0	PHLPP1	5188	chr18:60497464:+	ADNP2	35768	chr18:77875413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	PHLPP1->Oncogene{Bushman},PH_domain_and_leucine_rich_repeat_protein_phosphatase_1,chr18:60382672-60647666:+,ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	PLS3--TMEM14C	2	0	PLS3	1087	chrX:114795587:+	TMEM14C	26312	chr6:10724803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	PLS3->chrX:114795501-114885181:+,plastin_3,TMEM14C->chr6:10723148-10731362:+,transmembrane_protein_14C	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	POLE4--RP11-355F16.1	2	0	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	IGR37_SKIN	1	1	0.0205	TRUE	5	7	0	37	0	FALSE	ACH-000650
IGR37_SKIN	REL--UGP2	2	0	REL	1330	chr2:61108985:+	UGP2	31698	chr2:64109600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	REL->Oncogene{Bushman},REL_proto-oncogene,_NF-kB_subunit,chr2:61108656-61158745:+,UGP2->UDP-glucose_pyrophosphorylase_2,chr2:64068074-64118696:+	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	SCFD1--COG7	2	0	SCFD1	25050	chr14:31171581:+	COG7	38911	chr16:23457282:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	SCFD1->chr14:31091318-31205018:+,sec1_family_domain_containing_1,COG7->chr16:23399814-23464501:-,component_of_oligomeric_golgi_complex_7	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	SEPT7--FBXO8	2	0	SEPT7	8977	chr7:35913385:+	FBXO8	34933	chr4:175160341:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	SEPT7->chr7:35840542-35944917:+,septin_7,FBXO8->F-box_protein_8,chr4:175157809-175205415:-	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	TEX10--PTBP3	2	0	TEX10	1168	chr9:103115054:-	PTBP3	27043	chr9:115060196:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	TEX10->chr9:103064359-103115221:-,testis_expressed_10,PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	TIMM17A--B4GALT7	2	0	TIMM17A	2356	chr1:201926702:+	B4GALT7	12805	chr5:177028427:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	TIMM17A->chr1:201924619-201939789:+,translocase_of_inner_mitochondrial_membrane_17_homolog_A_(yeast),B4GALT7->beta-1,4-galactosyltransferase_7,chr5:177027101-177037348:+	IGR37_SKIN	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	FAM154B--RP11-152F13.7	1	2	FAM154B	1123	chr15:82555273:+	RP11-152F13.7	13661	chr15:82970155:+	ONLY_REF_SPLICE	YES	3	62	0.5	0.05	0.0102	0.0205	FAM154B->chr15:82555151-82577271:+,RP11-152F13.7->chr15:82944773-82974312:+	IGR37_SKIN	0.05	0.5	0.0307	TRUE	0	0	0	1	0	TRUE	ACH-000650
IGR37_SKIN	HADHA--HADHB	1	2	HADHA	7852	chr2:26453060:-	HADHB	26873	chr2:26477115:+	ONLY_REF_SPLICE	YES	1189	27	0	0.1	0.0102	0.0205	GTEx_v2:{count=2;pct=0.02%;dist=Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1},NEIGHBORS_OVERLAP:-:+:[1556],HADHA->chr2:26413504-26467594:-,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_alpha_subunit,HADHB->chr2:26466038-26513336:+,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_beta_subunit	IGR37_SKIN	0	0.1	0.0307	FALSE	0	0	0	1	0	FALSE	ACH-000650
IGR37_SKIN	WDR4--NDUFV3	1	2	WDR4	3732	chr21:44293713:-	NDUFV3	25452	chr21:44328974:+	ONLY_REF_SPLICE	YES	218	134	0.01	0.02	0.0102	0.0205	LOCAL_INVERSION:-:+:[76],WDR4->WD_repeat_domain_4,chr21:44263204-44299678:-,NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+	IGR37_SKIN	0.01	0.02	0.0307	FALSE	0	0	0	1	0	FALSE	ACH-000650
IGR37_SKIN	DNAJC2--PSMC2	1	1	DNAJC2	3582	chr7:102978183:-	PSMC2	23696	chr7:102994368:+	ONLY_REF_SPLICE	YES	65	464	0.03	0	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},NEIGHBORS_OVERLAP:-:+:[619],DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-,PSMC2->chr7:102984701-103009842:+,proteasome_26S_subunit,_ATPase_2	IGR37_SKIN	0	0.03	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000650
IGR37_SKIN	DNAJC2--PSMC2	1	1	DNAJC2	1315	chr7:102985006:-	PSMC2	23696	chr7:102994368:+	ONLY_REF_SPLICE	YES	83	464	0.02	0	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},NEIGHBORS_OVERLAP:-:+:[619],DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-,PSMC2->chr7:102984701-103009842:+,proteasome_26S_subunit,_ATPase_2	IGR37_SKIN	0	0.02	0.0204	FALSE	0	1	0	3	0	FALSE	ACH-000650
IGR37_SKIN	OGT--RER1	1	1	OGT	13803	chrX:70776630:+	RER1	31621	chr1:2327223:+	ONLY_REF_SPLICE	YES	189	167	0.01	0.01	0.0102	0.0102	OGT->O-linked_N-acetylglucosamine_(GlcNAc)_transferase,chrX:70752933-70795747:+,RER1->chr1:2323267-2336883:+,retention_in_endoplasmic_reticulum_sorting_receptor_1	IGR37_SKIN	0.01	0.01	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000650
IGR37_SKIN	SAMD5--SASH1	1	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	NO	2	15	0.5	0.12	0.0102	0.0102	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	IGR37_SKIN	0.12	0.5	0.0204	TRUE	53	396	64	110	0	FALSE	ACH-000650
IGR37_SKIN	ZCCHC7--CAAP1	1	1	ZCCHC7	14566	chr9:37327831:+	CAAP1	28070	chr9:26861137:-	ONLY_REF_SPLICE	NO	26	34	0.07	0.06	0.0102	0.0102	ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7,CAAP1->caspase_activity_and_apoptosis_inhibitor_1,chr9:26840683-26892802:-	IGR37_SKIN	0.06	0.07	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000650
NCIH146_LUNG	PTGES3--AC108051.1	280	39	PTGES3	5533	chr12:57064059:-	AC108051.1	15797	chr2:103583963:-	ONLY_REF_SPLICE	YES	855	0	0.27	1	3.4515	0.4807	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,AC108051.1->chr2:103583866-103600887:-	NCIH146_LUNG	0.27	1	3.9322	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	AKT3--AC016629.3	116	67	AKT3	3500	chr1:244006427:-	AC016629.3	36902	chr19:59110627:-	INCL_NON_REF_SPLICE	YES	77	0	0.7	1	1.4299	0.8259	AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,AC016629.3->chr19:59105263-59110722:-	NCIH146_LUNG	0.7	1	2.2558	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	LINC01014--KCNMB2	69	30	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	31	217	0.76	0.31	0.8505	0.3698	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH146_LUNG	0.31	0.76	1.2203	FALSE	11	60	26	37	0	FALSE	ACH-000506
NCIH146_LUNG	RP11-123O10.4--GRIP1	66	27	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	16	1	0.85	0.8136	0.3328	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH146_LUNG	0.85	1	1.1464	FALSE	416	2512	207	587	0	FALSE	ACH-000506
NCIH146_LUNG	TIMM23B--LINC00843	63	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7766	0.3451	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH146_LUNG	0.99	1	1.1217	TRUE	508	994	45	981	0	FALSE	ACH-000506
NCIH146_LUNG	OR51S1--TP53I11	52	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.641	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH146_LUNG	1	1	0.641	TRUE	402	216	10	229	0	FALSE	ACH-000506
NCIH146_LUNG	PMM2--ABAT	38	30	PMM2	13956	chr16:8906963:+	ABAT	39627	chr16:8858595:+	ONLY_REF_SPLICE	YES	49	116	0.58	0.37	0.4684	0.3698	{Klijn_CCL:Lung=1,Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[4248],PMM2->chr16:8882680-8943188:+,phosphomannomutase_2,ABAT->4-aminobutyrate_aminotransferase,chr16:8768422-8878432:+	NCIH146_LUNG	0.37	0.58	0.8382	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	TIMM23--RP11-464F9.1	39	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	333	1	0.11	0.98	0.4807	0.0247	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH146_LUNG	0.11	0.98	0.5054	TRUE	519	3926	326	965	0	FALSE	ACH-000506
NCIH146_LUNG	ZNF654--HMGB2	38	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4684	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH146_LUNG	1	1	0.4684	TRUE	0	0	0	518	0	FALSE	ACH-000506
NCIH146_LUNG	SSBP2--CKMT2-AS1	32	21	SSBP2	7522	chr5:80911292:-	CKMT2-AS1	41694	chr5:80531941:-	ONLY_REF_SPLICE	YES	3	7	0.95	0.88	0.3945	0.2589	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,CKMT2-AS1->CKMT2_antisense_RNA_1,chr5:80499903-80597379:-	NCIH146_LUNG	0.88	0.95	0.6534	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	LINC01014--KCNMB2	27	31	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	31	235	0.65	0.2	0.3328	0.3821	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH146_LUNG	0.2	0.65	0.7149	FALSE	12	33	18	33	0	FALSE	ACH-000506
NCIH146_LUNG	RP11-408A13.2--NFIB	31	10	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	42	1	0.49	0.3821	0.1233	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	NCIH146_LUNG	0.49	1	0.5054	TRUE	0	14	0	20	14	FALSE	ACH-000506
NCIH146_LUNG	C15orf57--CBX3	28	19	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	24	106	0.66	0.31	0.3451	0.2342	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH146_LUNG	0.31	0.66	0.5793	TRUE	267	562	48	632	0	FALSE	ACH-000506
NCIH146_LUNG	MT-TA--MT-TC	28	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3451	0.0863	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH146_LUNG	1	1	0.4314	FALSE	462	80	0	856	0	FALSE	ACH-000506
NCIH146_LUNG	S1PR2--AC013394.2	19	15	S1PR2	1069	chr19:10341880:-	AC013394.2	13851	chr15:93440954:+	ONLY_REF_SPLICE	YES	17	187	0.67	0.15	0.2342	0.1849	S1PR2->chr19:10334520-10341948:-,sphingosine-1-phosphate_receptor_2,AC013394.2->chr15:93425937-93441975:+	NCIH146_LUNG	0.15	0.67	0.4191	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	HSP90AB1--MT-RNR2	20	5	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	5057	0	0	1	0.2465	0.0616	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH146_LUNG	0	1	0.3081	FALSE	13	9	0	364	0	FALSE	ACH-000506
NCIH146_LUNG	SLCO1A2--C2CD5	19	7	SLCO1A2	22351	chr12:21445098:-	C2CD5	47900	chr12:22646271:-	ONLY_REF_SPLICE	YES	33	87	0.44	0.23	0.2342	0.0863	SLCO1A2->chr12:21417534-21572528:-,solute_carrier_organic_anion_transporter_family_member_1A2,C2CD5->C2_calcium-dependent_domain_containing_5,chr12:22601517-22697480:-	NCIH146_LUNG	0.23	0.44	0.3205	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	SSBP2--CKMT2-AS1	17	5	SSBP2	7522	chr5:80911292:-	CKMT2-AS1	44219	chr5:80515611:-	ONLY_REF_SPLICE	YES	3	0	0.88	1	0.2096	0.0616	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,CKMT2-AS1->CKMT2_antisense_RNA_1,chr5:80499903-80597379:-	NCIH146_LUNG	0.88	1	0.2712	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	PTGES3--AC108051.1	14	15	PTGES3	4443	chr12:57065533:-	AC108051.1	15797	chr2:103583963:-	ONLY_REF_SPLICE	YES	824	0	0.03	1	0.1726	0.1849	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,AC108051.1->chr2:103583866-103600887:-	NCIH146_LUNG	0.03	1	0.3575	TRUE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	MYO3A--SCD5	15	8	MYO3A	4469	chr10:26243937:+	SCD5	45828	chr4:83626566:-	ONLY_REF_SPLICE	YES	21	15	0.52	0.61	0.1849	0.0986	MYO3A->chr10:26223196-26501456:+,myosin_IIIA,SCD5->chr4:83550692-83720010:-,stearoyl-CoA_desaturase_5	NCIH146_LUNG	0.52	0.61	0.2835	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	RP11-1102P16.1--EYA1	14	12	RP11-1102P16.1	7994	chr8:72447979:-	EYA1	19218	chr8:72268746:-	ONLY_REF_SPLICE	YES	8	62	0.76	0.3	0.1726	0.1479	NEIGHBORS[41208],RP11-1102P16.1->chr8:72315675-72504260:-,EYA1->EYA_transcriptional_coactivator_and_phosphatase_1,chr8:72109668-72274467:-	NCIH146_LUNG	0.3	0.76	0.3205	FALSE	1	26	0	4	0	FALSE	ACH-000506
NCIH146_LUNG	S1PR2--AC013394.2	13	16	S1PR2	2213	chr19:10335480:-	AC013394.2	13851	chr15:93440954:+	INCL_NON_REF_SPLICE	YES	25	187	0.54	0.13	0.1602	0.1972	S1PR2->chr19:10334520-10341948:-,sphingosine-1-phosphate_receptor_2,AC013394.2->chr15:93425937-93441975:+	NCIH146_LUNG	0.13	0.54	0.3574	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	PARP4--OSBPL9	13	11	PARP4	30636	chr13:25015984:-	OSBPL9	43950	chr1:52117663:+	ONLY_REF_SPLICE	YES	38	31	0.39	0.44	0.1602	0.1356	PARP4->chr13:24995064-25086948:-,poly(ADP-ribose)_polymerase_family_member_4,OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9	NCIH146_LUNG	0.39	0.44	0.2958	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	HSP90AB1--MT-RNR2	14	6	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	5107	0	0	1	0.1726	0.074	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH146_LUNG	0	1	0.2466	FALSE	13	9	0	364	0	FALSE	ACH-000506
NCIH146_LUNG	SAMD5--SASH1	14	4	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	30	14	0.38	0.56	0.1726	0.0493	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NCIH146_LUNG	0.38	0.56	0.2219	TRUE	53	396	64	110	0	FALSE	ACH-000506
NCIH146_LUNG	GUSBP2--RP11-457M11.5	13	7	GUSBP2	9031	chr6:26846479:-	RP11-457M11.5	15456	chr6:26687347:+	INCL_NON_REF_SPLICE	YES	7	6	0.74	0.77	0.1602	0.0863	GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2,RP11-457M11.5->chr6:26686469-26688192:+	NCIH146_LUNG	0.74	0.77	0.2465	TRUE	1	2	0	3	2	TRUE	ACH-000506
NCIH146_LUNG	ZNF443--CACNA1A	12	7	ZNF443	4499	chr19:12541714:-	CACNA1A	33669	chr19:13397780:-	INCL_NON_REF_SPLICE	YES	15	79	0.56	0.19	0.1479	0.0863	ZNF443->chr19:12540521-12551926:-,zinc_finger_protein_443,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	NCIH146_LUNG	0.19	0.56	0.2342	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	SMEK2--RTN4	13	1	SMEK2	6792	chr2:55831114:-	RTN4	41919	chr2:55214834:-	ONLY_REF_SPLICE	YES	28	174	0.33	0.07	0.1602	0.0123	GTEx&tcga_normals:1/3694=0.03%,SMEK2->chr2:55774428-55846015:-,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	NCIH146_LUNG	0.07	0.33	0.1725	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	EFNA5--RP11-252I13.2	11	8	EFNA5	1407	chr5:107006190:-	RP11-252I13.2	16014	chr5:107046209:-	ONLY_REF_SPLICE	YES	9	1	0.68	0.95	0.1356	0.0986	LOCAL_REARRANGEMENT:-:[28940],EFNA5->chr5:106712590-107006596:-,ephrin_A5,RP11-252I13.2->chr5:107035536-107052542:-	NCIH146_LUNG	0.68	0.95	0.2342	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	CHST9--AQP4	11	7	CHST9	4613	chr18:24604080:-	AQP4	13127	chr18:24442560:-	ONLY_REF_SPLICE	YES	99	4	0.15	0.82	0.1356	0.0863	NEIGHBORS[49813],CHST9->carbohydrate_sulfotransferase_9,chr18:24495595-24765281:-,AQP4->aquaporin_4,chr18:24432002-24445782:-	NCIH146_LUNG	0.15	0.82	0.2219	FALSE	0	1	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	RP11-680G10.1--GSE1	12	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	184	1	0.08	0.1479	0.037	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH146_LUNG	0.08	1	0.1849	TRUE	465	1949	224	605	0	FALSE	ACH-000506
NCIH146_LUNG	C15orf57--CBX3	9	14	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	26	109	0.47	0.17	0.1109	0.1726	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH146_LUNG	0.17	0.47	0.2835	TRUE	267	562	48	632	0	FALSE	ACH-000506
NCIH146_LUNG	SYN3--LARGE	9	5	SYN3	5498	chr22:33376630:-	LARGE	58411	chr22:33562818:-	ONLY_REF_SPLICE	YES	25	0	0.36	1	0.1109	0.0616	SYN3->chr22:32908539-33454358:-,synapsin_III,LARGE->chr22:33558212-34318829:-,like-glycosyltransferase	NCIH146_LUNG	0.36	1	0.1725	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	SSBP2--CKMT2-AS1	3	26	SSBP2	7522	chr5:80911292:-	CKMT2-AS1	37232	chr5:80541228:-	ONLY_REF_SPLICE	YES	3	13	0.91	0.69	0.037	0.3205	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,CKMT2-AS1->CKMT2_antisense_RNA_1,chr5:80499903-80597379:-	NCIH146_LUNG	0.69	0.91	0.3575	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	SSBP2--CKMT2-AS1	2	28	SSBP2	7522	chr5:80911292:-	CKMT2-AS1	36149	chr5:80542791:-	ONLY_REF_SPLICE	YES	3	12	0.91	0.71	0.0247	0.3451	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,CKMT2-AS1->CKMT2_antisense_RNA_1,chr5:80499903-80597379:-	NCIH146_LUNG	0.71	0.91	0.3698	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	SSBP2--CKMT2-AS1	2	28	SSBP2	7522	chr5:80911292:-	CKMT2-AS1	35062	chr5:80546608:-	ONLY_REF_SPLICE	YES	3	11	0.91	0.73	0.0247	0.3451	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,CKMT2-AS1->CKMT2_antisense_RNA_1,chr5:80499903-80597379:-	NCIH146_LUNG	0.73	0.91	0.3698	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	POLDIP3--CYB5R3	7	6	POLDIP3	9001	chr22:42987961:-	CYB5R3	25377	chr22:43023694:-	ONLY_REF_SPLICE	YES	140	293	0.08	0.04	0.0863	0.074	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[2878],POLDIP3->chr22:42979727-43010968:-,polymerase_(DNA)_delta_interacting_protein_3,CYB5R3->chr22:43013846-43045574:-,cytochrome_b5_reductase_3	NCIH146_LUNG	0.04	0.08	0.1603	TRUE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	RP11-1102P16.1--EYA1	5	14	RP11-1102P16.1	11923	chr8:72383093:-	EYA1	19218	chr8:72268746:-	ONLY_REF_SPLICE	YES	2	62	0.9	0.23	0.0616	0.1726	NEIGHBORS[41208],RP11-1102P16.1->chr8:72315675-72504260:-,EYA1->EYA_transcriptional_coactivator_and_phosphatase_1,chr8:72109668-72274467:-	NCIH146_LUNG	0.23	0.9	0.2342	FALSE	1	26	0	4	0	FALSE	ACH-000506
NCIH146_LUNG	CTD-2008L17.1--RP11-456O19.2	8	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	8	0	0.53	1	0.0986	0.0123	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH146_LUNG	0.53	1	0.1109	FALSE	33	240	4	98	0	FALSE	ACH-000506
NCIH146_LUNG	RP11-680G10.1--GSE1	7	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	20	1	0.35	0.0863	0.0493	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH146_LUNG	0.35	1	0.1356	TRUE	458	1351	185	561	0	FALSE	ACH-000506
NCIH146_LUNG	MT-ATP6--MT-CO1	5	10	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2975	21410	0.01	0	0.0616	0.1233	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH146_LUNG	0	0.01	0.1849	FALSE	183	104	9	328	0	FALSE	ACH-000506
NCIH146_LUNG	PMM2--ABAT	4	14	PMM2	13956	chr16:8906963:+	ABAT	41097	chr16:8860065:+	ONLY_REF_SPLICE	YES	49	102	0.27	0.15	0.0493	0.1726	{Klijn_CCL:Lung=1,Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[4248],PMM2->chr16:8882680-8943188:+,phosphomannomutase_2,ABAT->4-aminobutyrate_aminotransferase,chr16:8768422-8878432:+	NCIH146_LUNG	0.15	0.27	0.2219	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	RP11-371M22.1--KCNN2	6	6	RP11-371M22.1	2166	chr5:113392868:+	KCNN2	5170	chr5:113696642:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0.074	GTEx_FI:{Stomach=[count:1=pct:1.1],Heart=[count:1=pct:0.4]},RP11-371M22.1->chr5:113391703-113392871:+,KCNN2->chr5:113696642-113832337:+,potassium_calcium-activated_channel_subfamily_N_member_2	NCIH146_LUNG	1	1	0.148	TRUE	2	0	0	3	0	FALSE	ACH-000506
NCIH146_LUNG	RP4-565E6.1--HYDIN	7	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	2	1	0.8	0.0863	0.0123	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH146_LUNG	0.8	1	0.0986	TRUE	456	1387	91	133	0	FALSE	ACH-000506
NCIH146_LUNG	S1PR2--AC013394.2	3	17	S1PR2	2314	chr19:10335379:-	AC013394.2	13851	chr15:93440954:+	INCL_NON_REF_SPLICE	YES	6	187	0.77	0.1	0.037	0.2096	S1PR2->chr19:10334520-10341948:-,sphingosine-1-phosphate_receptor_2,AC013394.2->chr15:93425937-93441975:+	NCIH146_LUNG	0.1	0.77	0.2466	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	RP11-459O1.2--CNR1	6	4	RP11-459O1.2	2236	chr6:89033719:-	CNR1	14602	chr6:88855056:-	ONLY_REF_SPLICE	YES	0	3	1	0.77	0.074	0.0493	RP11-459O1.2->chr6:89008669-89130752:-,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	NCIH146_LUNG	0.77	1	0.1233	TRUE	0	1	0	2	1	TRUE	ACH-000506
NCIH146_LUNG	ZNF738--CHMP1A	7	0	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0863	0	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH146_LUNG	1	1	0.0863	TRUE	1	20	1	28	3	FALSE	ACH-000506
NCIH146_LUNG	CTD-2008L17.1--RP11-456O19.2	6	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	8	0	0.53	1	0.074	0.037	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH146_LUNG	0.53	1	0.111	FALSE	20	187	4	79	0	FALSE	ACH-000506
NCIH146_LUNG	RP11-123O10.4--GRIP1	3	14	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	40	1	0.3	0.037	0.1726	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH146_LUNG	0.3	1	0.2096	FALSE	93	270	15	244	0	FALSE	ACH-000506
NCIH146_LUNG	SSBP2--CKMT2-AS1	1	22	SSBP2	7522	chr5:80911292:-	CKMT2-AS1	38903	chr5:80535174:-	ONLY_REF_SPLICE	YES	3	12	0.88	0.66	0.0123	0.2712	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,CKMT2-AS1->CKMT2_antisense_RNA_1,chr5:80499903-80597379:-	NCIH146_LUNG	0.66	0.88	0.2835	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	SSBP2--CKMT2-AS1	1	22	SSBP2	7522	chr5:80911292:-	CKMT2-AS1	38898	chr5:80535179:-	ONLY_REF_SPLICE	YES	3	13	0.88	0.64	0.0123	0.2712	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,CKMT2-AS1->CKMT2_antisense_RNA_1,chr5:80499903-80597379:-	NCIH146_LUNG	0.64	0.88	0.2835	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	LINC00299--AC007464.1	6	1	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.074	0.0123	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	NCIH146_LUNG	0.7	1	0.0863	TRUE	67	49	0	25	0	FALSE	ACH-000506
NCIH146_LUNG	PACRGL--KCNIP4	6	1	PACRGL	14473	chr4:20729020:+	KCNIP4	22052	chr4:21764655:-	ONLY_REF_SPLICE	YES	54	0	0.11	1	0.074	0.0123	NEIGHBORS_OVERLAP:+:-:[24291],PACRGL->PARK2_co-regulated_like,chr4:20697905-20754530:+,KCNIP4->chr4:20730239-21950422:-,potassium_voltage-gated_channel_interacting_protein_4	NCIH146_LUNG	0.11	1	0.0863	FALSE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	AGBL4--BEND5	6	0	AGBL4	2274	chr1:50317068:-	BEND5	28501	chr1:49227142:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.074	0	NEIGHBORS_OVERLAP:-:-:[49446],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	NCIH146_LUNG	1	1	0.074	FALSE	0	0	0	2	0	FALSE	ACH-000506
NCIH146_LUNG	TYMS--GNAS	6	0	TYMS	4286	chr18:662320:+	GNAS	29027	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.074	0	TYMS->chr18:657604-673578:+,thymidylate_synthetase,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH146_LUNG	1	1	0.074	TRUE	0	2	0	3	0	TRUE	ACH-000506
NCIH146_LUNG	ZNF443--CACNA1A	5	3	ZNF443	3822	chr19:12542391:-	CACNA1A	33669	chr19:13397780:-	INCL_NON_REF_SPLICE	YES	30	79	0.21	0.09	0.0616	0.037	ZNF443->chr19:12540521-12551926:-,zinc_finger_protein_443,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	NCIH146_LUNG	0.09	0.21	0.0986	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	LINC00299--AC007464.1	5	2	LINC00299	17125	chr2:8200478:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0616	0.0247	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	NCIH146_LUNG	0.78	1	0.0863	TRUE	20	19	0	15	0	FALSE	ACH-000506
NCIH146_LUNG	ZNF250--TRAPPC9	5	2	ZNF250	13108	chr8:146101922:-	TRAPPC9	48206	chr8:141034176:-	ONLY_REF_SPLICE	YES	5	21	0.58	0.25	0.0616	0.0247	ZNF250->chr8:146076632-146127553:-,zinc_finger_protein_250,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	NCIH146_LUNG	0.25	0.58	0.0863	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	VWDE--PHF14	5	1	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	23	50	0.21	0.11	0.0616	0.0123	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH146_LUNG	0.11	0.21	0.0739	TRUE	0	6	0	17	2	TRUE	ACH-000506
NCIH146_LUNG	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH146_LUNG	1	1	0.0616	TRUE	0	0	0	434	0	FALSE	ACH-000506
NCIH146_LUNG	NRIP1--AF127936.7	4	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.47	1	0.0493	0.0493	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH146_LUNG	0.47	1	0.0986	FALSE	164	806	69	479	0	FALSE	ACH-000506
NCIH146_LUNG	POLDIP3--CYB5R3	3	8	POLDIP3	9001	chr22:42987961:-	CYB5R3	24784	chr22:43024287:-	ONLY_REF_SPLICE	YES	140	272	0.07	0.04	0.037	0.0986	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[2878],POLDIP3->chr22:42979727-43010968:-,polymerase_(DNA)_delta_interacting_protein_3,CYB5R3->chr22:43013846-43045574:-,cytochrome_b5_reductase_3	NCIH146_LUNG	0.04	0.07	0.1356	TRUE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	GNGT1--AC002076.10	4	2	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	5	2	0.55	0.75	0.0493	0.0247	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	NCIH146_LUNG	0.55	0.75	0.074	FALSE	0	28	0	37	0	FALSE	ACH-000506
NCIH146_LUNG	NRIP1--AF127936.7	4	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.43	1	0.0493	0.0247	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH146_LUNG	0.43	1	0.074	FALSE	125	705	46	456	0	FALSE	ACH-000506
NCIH146_LUNG	PROM1--TAPT1	4	2	PROM1	8824	chr4:16077310:-	TAPT1	51133	chr4:16215521:-	ONLY_REF_SPLICE	YES	2	26	0.75	0.19	0.0493	0.0247	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[76127],PROM1->chr4:15964699-16086001:-,prominin_1,TAPT1->chr4:16162128-16229033:-,transmembrane_anterior_posterior_transformation_1	NCIH146_LUNG	0.19	0.75	0.074	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	RP11-120D5.1--MID1	4	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	58	0.75	0.09	0.0493	0.0247	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH146_LUNG	0.09	0.75	0.074	FALSE	16	356	14	466	0	FALSE	ACH-000506
NCIH146_LUNG	AP000525.9--LA16c-60G3.6	4	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0493	0.0123	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH146_LUNG	0.62	1	0.0616	TRUE	0	42	0	133	42	FALSE	ACH-000506
NCIH146_LUNG	CHST9--AQP4	2	9	CHST9	5651	chr18:24524293:-	AQP4	13127	chr18:24442560:-	ONLY_REF_SPLICE	YES	121	4	0.08	0.73	0.0247	0.1109	NEIGHBORS[49813],CHST9->carbohydrate_sulfotransferase_9,chr18:24495595-24765281:-,AQP4->aquaporin_4,chr18:24432002-24445782:-	NCIH146_LUNG	0.08	0.73	0.1356	FALSE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0.0123	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH146_LUNG	1	1	0.0616	FALSE	462	80	0	856	0	FALSE	ACH-000506
NCIH146_LUNG	RP11-319G9.5--WWOX	4	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	25	1	0.17	0.0493	0.0123	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	NCIH146_LUNG	0.17	1	0.0616	FALSE	154	425	28	76	0	FALSE	ACH-000506
NCIH146_LUNG	AKT3--AC016629.3	1	12	AKT3	3500	chr1:244006427:-	AC016629.3	38063	chr19:59109183:-	ONLY_REF_SPLICE	YES	77	18	0.14	0.42	0.0123	0.1479	AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,AC016629.3->chr19:59105263-59110722:-	NCIH146_LUNG	0.14	0.42	0.1602	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	DPYSL5--YIPF4	4	0	DPYSL5	17939	chr2:27171466:+	YIPF4	37274	chr2:32539012:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0	DPYSL5->chr2:27070615-27173219:+,dihydropyrimidinase_like_5,YIPF4->Yip1_domain_family_member_4,chr2:32502979-32541663:+	NCIH146_LUNG	1	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH146_LUNG	1	1	0.0493	TRUE	0	0	0	434	0	FALSE	ACH-000506
NCIH146_LUNG	SHFM1--DLX6-AS1	4	0	SHFM1	7020	chr7:96324110:-	DLX6-AS1	31487	chr7:96598430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0493	0	SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-	NCIH146_LUNG	1	1	0.0493	TRUE	0	1	0	6	0	TRUE	ACH-000506
NCIH146_LUNG	MT-ND1--MT-RNR2	3	2	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	6	0	0.45	1	0.037	0.0247	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH146_LUNG	0.45	1	0.0617	FALSE	114	26	4	85	0	FALSE	ACH-000506
NCIH146_LUNG	EIF3A--MGMT	3	1	EIF3A	1177	chr10:120840140:-	MGMT	26742	chr10:131334505:+	ONLY_REF_SPLICE	YES	279	6	0.01	0.4	0.037	0.0123	EIF3A->Oncogene{Bushman},chr10:120794356-120840316:-,eukaryotic_translation_initiation_factor_3_subunit_A,MGMT->O-6-methylguanine-DNA_methyltransferase,chr10:131265448-131566271:+	NCIH146_LUNG	0.01	0.4	0.0493	FALSE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	FTH1--ACTB	3	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	2756	1	0	0.8	0.037	0.0123	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH146_LUNG	0	0.8	0.0493	FALSE	1	0	0	97	0	FALSE	ACH-000506
NCIH146_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	NO	11643	20654	0	0	0.037	0.0123	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH146_LUNG	0	0	0.0493	FALSE	183	104	9	328	0	FALSE	ACH-000506
NCIH146_LUNG	MYO3A--SCD5	3	1	MYO3A	2149	chr10:26224759:+	SCD5	45828	chr4:83626566:-	ONLY_REF_SPLICE	YES	23	15	0.15	0.21	0.037	0.0123	MYO3A->chr10:26223196-26501456:+,myosin_IIIA,SCD5->chr4:83550692-83720010:-,stearoyl-CoA_desaturase_5	NCIH146_LUNG	0.15	0.21	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.037	0.0123	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH146_LUNG	0.57	1	0.0493	FALSE	292	1546	117	613	0	FALSE	ACH-000506
NCIH146_LUNG	CALM3--MT-ATP8	3	0	CALM3	8081	chr19:47113583:+	MT-ATP8	11589	chrM:8406:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH146_LUNG	1	1	0.037	FALSE	12	0	0	26	0	FALSE	ACH-000506
NCIH146_LUNG	DLX6-AS1--SHFM1	2	4	DLX6-AS1	2620	chr7:96641137:-	SHFM1	30560	chr7:96324203:-	ONLY_REF_SPLICE	YES	272	904	0.02	0.01	0.0247	0.0493	DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	NCIH146_LUNG	0.01	0.02	0.074	FALSE	0	3	0	2	1	FALSE	ACH-000506
NCIH146_LUNG	GNGT1--AC002076.10	2	4	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	6	2	0.5	0.75	0.0247	0.0493	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	NCIH146_LUNG	0.5	0.75	0.074	FALSE	0	10	0	30	0	FALSE	ACH-000506
NCIH146_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH146_LUNG	1	1	0.037	FALSE	183	104	9	328	0	FALSE	ACH-000506
NCIH146_LUNG	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH146_LUNG	1	1	0.037	FALSE	25	145	6	90	0	FALSE	ACH-000506
NCIH146_LUNG	RP11-324C10.1--NLGN1	3	0	RP11-324C10.1	2877	chr3:172978339:+	NLGN1	14253	chr3:173322069:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	NEIGHBORS[59319],RP11-324C10.1->chr3:172871527-173054755:+,NLGN1->chr3:173114074-174004434:+,neuroligin_1	NCIH146_LUNG	1	1	0.037	FALSE	0	4	0	4	0	FALSE	ACH-000506
NCIH146_LUNG	PROSC--CHMP1A	2	3	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	146	263	0.03	0.02	0.0247	0.037	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH146_LUNG	0.02	0.03	0.0617	TRUE	13	55	3	29	0	FALSE	ACH-000506
NCIH146_LUNG	RP11-1102P16.1--EYA1	1	6	RP11-1102P16.1	7994	chr8:72447979:-	EYA1	21396	chr8:72246409:-	ONLY_REF_SPLICE	YES	8	71	0.47	0.09	0.0123	0.074	NEIGHBORS[41208],RP11-1102P16.1->chr8:72315675-72504260:-,EYA1->EYA_transcriptional_coactivator_and_phosphatase_1,chr8:72109668-72274467:-	NCIH146_LUNG	0.09	0.47	0.0863	FALSE	0	24	0	3	0	FALSE	ACH-000506
NCIH146_LUNG	RP11-120D5.1--MID1	2	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	58	0.4	0.06	0.0247	0.0247	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH146_LUNG	0.06	0.4	0.0494	FALSE	0	48	1	163	0	FALSE	ACH-000506
NCIH146_LUNG	CMTM8--CMTM7	2	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	84	38	0.03	0.07	0.0247	0.0123	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	NCIH146_LUNG	0.03	0.07	0.037	FALSE	118	557	29	88	0	FALSE	ACH-000506
NCIH146_LUNG	CTD-2008L17.1--RP11-456O19.2	2	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	13011	chr18:53755642:+	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0247	0.0123	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH146_LUNG	0.27	1	0.037	FALSE	0	12	0	8	0	FALSE	ACH-000506
NCIH146_LUNG	AC016725.4--TMEM163	2	0	AC016725.4	1148	chr2:135676133:-	TMEM163	12586	chr2:135309662:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	NEIGHBORS[16464],AC016725.4->chr2:135493034-135676280:-,TMEM163->chr2:135213330-135476570:-,transmembrane_protein_163	NCIH146_LUNG	1	1	0.0247	FALSE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	ATP8B1--MAPK8	2	0	ATP8B1	3779	chr18:55398859:-	MAPK8	49703	chr10:49639236:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	ATP8B1->ATPase_phospholipid_transporting_8B1,Oncogene{Bushman},chr18:55313658-55470333:-,MAPK8->Oncogene{Bushman},chr10:49514698-49647403:+,mitogen-activated_protein_kinase_8	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	ATRX--PGK1	2	0	ATRX	1235	chrX:77041468:-	PGK1	52000	chrX:77365364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1	NCIH146_LUNG	1	1	0.0247	TRUE	0	1	0	9	0	TRUE	ACH-000506
NCIH146_LUNG	CPSF6--BAGE2	2	0	CPSF6	11046	chr12:69656342:+	BAGE2	24376	chr21:11058323:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-	NCIH146_LUNG	1	1	0.0247	TRUE	0	1	0	2	0	TRUE	ACH-000506
NCIH146_LUNG	DNAJC24--IMMP1L	2	0	DNAJC24	2020	chr11:31392406:+	IMMP1L	34941	chr11:31455117:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Nerve_-_Tibial=2,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Pancreas=1},LOCAL_INVERSION:+:-:[552],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	NCIH146_LUNG	1	1	0.0247	TRUE	0	4	0	9	1	TRUE	ACH-000506
NCIH146_LUNG	NR2F1-AS1--SKIV2L2	2	0	NR2F1-AS1	6705	chr5:92899070:-	SKIV2L2	25696	chr5:54618155:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-,SKIV2L2->Ski2_like_RNA_helicase_2,chr5:54603588-54721409:+	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	PDAP1--ZNF789	2	0	PDAP1	3518	chr7:99001021:-	ZNF789	14783	chr7:99074026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	LOCAL_INVERSION:-:+:[64012],PDAP1->PDGFA_associated_protein_1,chr7:98989671-99006452:-,ZNF789->chr7:99070464-99101273:+,zinc_finger_protein_789	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	PTPRO--EPS8	2	0	PTPRO	1405	chr12:15475735:+	EPS8	46133	chr12:15835906:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	LOCAL_INVERSION:+:-:[22759],PTPRO->chr12:15475331-15750333:+,protein_tyrosine_phosphatase,_receptor_type_O,EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	PXMP2--TPM3	2	0	PXMP2	2662	chr12:133266962:+	TPM3	30642	chr1:154130197:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	PXMP2->chr12:133264192-133297276:+,peroxisomal_membrane_protein_2,TPM3->Oncogene{Bushman},chr1:154127784-154167124:-,tropomyosin_3	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	RP11-324C10.1--NLGN1	2	0	RP11-324C10.1	2141	chr3:172977603:+	NLGN1	14253	chr3:173322069:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	NEIGHBORS[59319],RP11-324C10.1->chr3:172871527-173054755:+,NLGN1->chr3:173114074-174004434:+,neuroligin_1	NCIH146_LUNG	1	1	0.0247	FALSE	0	4	0	4	0	FALSE	ACH-000506
NCIH146_LUNG	RP11-548L20.1--RP11-79E3.3	2	0	RP11-548L20.1	2265	chr4:34260709:-	RP11-79E3.3	12416	chr4:33949146:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	NEIGHBORS[81001],RP11-548L20.1->chr4:34122516-34271369:-,RP11-79E3.3->chr4:33777969-34041515:-	NCIH146_LUNG	1	1	0.0247	FALSE	2	10	2	7	0	FALSE	ACH-000506
NCIH146_LUNG	STAG3L1--SAR1A	2	0	STAG3L1	5752	chr7:74995707:+	SAR1A	19380	chr10:71920825:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	STAG3L1->chr7:74988448-75024657:+,stromal_antigen_3-like_1_(pseudogene),SAR1A->chr10:71907045-71930279:-,secretion_associated_Ras_related_GTPase_1A	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	TMEM241--SYMPK	2	0	TMEM241	17323	chr18:20889644:-	SYMPK	33589	chr19:46357765:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	TMEM241->chr18:20777108-21017925:-,transmembrane_protein_241,SYMPK->chr19:46318668-46366548:-,symplekin	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	TYMS--PCBP2	2	0	TYMS	4286	chr18:662320:+	PCBP2	28728	chr12:53862564:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	TYMS->chr18:657604-673578:+,thymidylate_synthetase,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	UBAP1--UBE2R2	2	0	UBAP1	1236	chr9:34179238:+	UBE2R2	16187	chr9:33886879:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Muscle=[count:6=pct:2.6],Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4]},GTEx_v2:{count=2;pct=0.02%;dist=Vagina=1,Muscle_-_Skeletal=1},UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	NCIH146_LUNG	1	1	0.0247	TRUE	8	5	0	9	0	FALSE	ACH-000506
NCIH146_LUNG	VPS35--C16orf87	2	0	VPS35	7356	chr16:46712855:-	C16orf87	30117	chr16:46836982:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	GTEx&tcga_normals:1/3694=0.03%,VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-,C16orf87->chr16:46830519-46865323:-,chromosome_16_open_reading_frame_87	NCIH146_LUNG	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	CHST9--AQP4	1	3	CHST9	4613	chr18:24604080:-	AQP4	13250	chr18:24442437:-	ONLY_REF_SPLICE	YES	99	63	0.04	0.06	0.0123	0.037	NEIGHBORS[49813],CHST9->carbohydrate_sulfotransferase_9,chr18:24495595-24765281:-,AQP4->aquaporin_4,chr18:24432002-24445782:-	NCIH146_LUNG	0.04	0.06	0.0493	FALSE	0	1	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	DLX6-AS1--SHFM1	1	3	DLX6-AS1	1141	chr7:96643237:-	SHFM1	30560	chr7:96324203:-	ONLY_REF_SPLICE	YES	136	904	0.03	0	0.0123	0.037	DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	NCIH146_LUNG	0	0.03	0.0493	FALSE	0	2	0	4	2	FALSE	ACH-000506
NCIH146_LUNG	RP11-459O1.2--CNR1	1	2	RP11-459O1.2	1090	chr6:89130663:-	CNR1	14602	chr6:88855056:-	ONLY_REF_SPLICE	YES	0	3	1	0.5	0.0123	0.0247	RP11-459O1.2->chr6:89008669-89130752:-,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	NCIH146_LUNG	0.5	1	0.037	TRUE	0	1	0	2	1	TRUE	ACH-000506
NCIH146_LUNG	SF1--FUS	1	2	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	NO	352	959	0.01	0	0.0123	0.0247	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH146_LUNG	0	0.01	0.037	FALSE	5	20	0	32	0	FALSE	ACH-000506
NCIH146_LUNG	SLCO1A2--C2CD5	1	2	SLCO1A2	22351	chr12:21445098:-	C2CD5	50111	chr12:22637822:-	ONLY_REF_SPLICE	NO	33	99	0.08	0.03	0.0123	0.0247	SLCO1A2->chr12:21417534-21572528:-,solute_carrier_organic_anion_transporter_family_member_1A2,C2CD5->C2_calcium-dependent_domain_containing_5,chr12:22601517-22697480:-	NCIH146_LUNG	0.03	0.08	0.037	TRUE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	ZNF250--TRAPPC9	1	2	ZNF250	14319	chr8:146096003:-	TRAPPC9	48206	chr8:141034176:-	ONLY_REF_SPLICE	YES	2	21	0.6	0.12	0.0123	0.0247	ZNF250->chr8:146076632-146127553:-,zinc_finger_protein_250,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	NCIH146_LUNG	0.12	0.6	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000506
NCIH146_LUNG	CHD2--CHMP1A	1	1	CHD2	6529	chr15:93444529:+	CHMP1A	64627	chr16:89713739:-	ONLY_REF_SPLICE	YES	69	263	0.03	0.01	0.0123	0.0123	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Thyroid=[count:2=pct:1.1],Brain=[count:1=pct:0.2]},GTEx_v2:{count=10;pct=0.12%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Whole_Blood=2,Breast_-_Mammary_Tissue=1,Brain_-_Hypothalamus=1,Thyroid=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH146_LUNG	0.01	0.03	0.0246	FALSE	2	11	0	5	0	FALSE	ACH-000506
NCIH146_LUNG	CHST9--AQP4	1	1	CHST9	1182	chr18:24765100:-	AQP4	13127	chr18:24442560:-	ONLY_REF_SPLICE	YES	233	4	0.01	0.33	0.0123	0.0123	NEIGHBORS[49813],CHST9->carbohydrate_sulfotransferase_9,chr18:24495595-24765281:-,AQP4->aquaporin_4,chr18:24432002-24445782:-	NCIH146_LUNG	0.01	0.33	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	ECHDC1--RNF146	1	1	ECHDC1	10423	chr6:127635961:-	RNF146	20245	chr6:127601376:+	ONLY_REF_SPLICE	YES	267	25	0.01	0.07	0.0123	0.0123	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=5;pct=0.06%;dist=Thyroid=2,Whole_Blood=1,Heart_-_Left_Ventricle=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[143],ECHDC1->chr6:127609855-127664754:-,ethylmalonyl-CoA_decarboxylase_1,RNF146->chr6:127587755-127609712:+,ring_finger_protein_146	NCIH146_LUNG	0.01	0.07	0.0246	FALSE	1	2	1	3	0	FALSE	ACH-000506
NCIH146_LUNG	EIF5B--LYG1	1	1	EIF5B	1237	chr2:99954052:+	LYG1	33228	chr2:99901283:-	ONLY_REF_SPLICE	YES	222	0	0.01	1	0.0123	0.0123	LOCAL_INVERSION:+:-:[32611],EIF5B->chr2:99953816-100017789:+,eukaryotic_translation_initiation_factor_5B,LYG1->chr2:99900701-99921205:-,lysozyme_g1	NCIH146_LUNG	0.01	1	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	FDPS--PRPF8	1	1	FDPS	3847	chr1:155282186:+	PRPF8	24100	chr17:1565447:-	ONLY_REF_SPLICE	YES	512	454	0	0	0.0123	0.0123	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,PRPF8->chr17:1553923-1588176:-,pre-mRNA_processing_factor_8	NCIH146_LUNG	0	0	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	GLTSCR2--CACNA1A	1	1	GLTSCR2	5940	chr19:48255864:+	CACNA1A	32365	chr19:13419342:-	ONLY_REF_SPLICE	YES	653	165	0	0.01	0.0123	0.0123	GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	NCIH146_LUNG	0	0.01	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	NCKAP1--DNAJC10	1	1	NCKAP1	6369	chr2:183866681:-	DNAJC10	55111	chr2:183584734:+	ONLY_REF_SPLICE	NO	150	231	0.01	0.01	0.0123	0.0123	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Substantia_nigra=1},NCKAP1->NCK_associated_protein_1,chr2:183773843-183903586:-,DNAJC10->DnaJ_heat_shock_protein_family_(Hsp40)_member_C10,chr2:183580999-183659191:+	NCIH146_LUNG	0.01	0.01	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	NKAIN2--PKIB	1	1	NKAIN2	1114	chr6:124125399:+	PKIB	24593	chr6:122954428:+	ONLY_REF_SPLICE	YES	106	1433	0.02	0	0.0123	0.0123	NKAIN2->Na+/K+_transporting_ATPase_interacting_2,Oncogene{Bushman},chr6:124125286-125146803:+,PKIB->chr6:122793076-123047518:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_beta	NCIH146_LUNG	0	0.02	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	PROSC--FAM120AOS	1	1	PROSC	2996	chr8:37623873:+	FAM120AOS	15389	chr9:96212881:-	ONLY_REF_SPLICE	YES	146	105	0.01	0.02	0.0123	0.0123	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),FAM120AOS->chr9:96208776-96215874:-,family_with_sequence_similarity_120A_opposite_strand	NCIH146_LUNG	0.01	0.02	0.0246	FALSE	0	1	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	RPRD1A--BAGE2	1	1	RPRD1A	10586	chr18:33606863:-	BAGE2	26940	chr21:11058323:-	ONLY_REF_SPLICE	YES	361	43	0.01	0.04	0.0123	0.0123	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-	NCIH146_LUNG	0.01	0.04	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	SHFM1--SLC25A13	1	1	SHFM1	7020	chr7:96324110:-	SLC25A13	29382	chr7:95864229:-	ONLY_REF_SPLICE	YES	792	400	0	0	0.0123	0.0123	GTEx&tcga_normals:2/3694=0.05%,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13	NCIH146_LUNG	0	0	0.0246	FALSE	0	0	0	2	0	FALSE	ACH-000506
NCIH146_LUNG	TPH2--TRHDE	1	1	TPH2	18133	chr12:72441437:+	TRHDE	54210	chr12:73012671:+	ONLY_REF_SPLICE	YES	0	6	1	0.25	0.0123	0.0123	NEIGHBORS_OVERLAP:+:+:[99352],TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	NCIH146_LUNG	0.25	1	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	TUSC3--DLX6-AS1	1	1	TUSC3	13954	chr8:15601121:+	DLX6-AS1	30016	chr7:96598430:-	ONLY_REF_SPLICE	YES	587	303	0	0.01	0.0123	0.0123	TUSC3->chr8:15274724-15624158:+,tumor_suppressor_candidate_3,DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-	NCIH146_LUNG	0	0.01	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	UCK1--PRRC2B	1	1	UCK1	2781	chr9:134404875:-	PRRC2B	42107	chr9:134369792:+	ONLY_REF_SPLICE	YES	84	257	0.02	0.01	0.0123	0.0123	LOCAL_INVERSION:-:+:[23604],UCK1->chr9:134399188-134406655:-,uridine-cytidine_kinase_1,PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B	NCIH146_LUNG	0.01	0.02	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000506
NCIH146_LUNG	ZNF250--TRAPPC9	1	1	ZNF250	9280	chr8:146105750:-	TRAPPC9	48206	chr8:141034176:-	ONLY_REF_SPLICE	YES	5	21	0.29	0.09	0.0123	0.0123	ZNF250->chr8:146076632-146127553:-,zinc_finger_protein_250,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	NCIH146_LUNG	0.09	0.29	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000506
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNMT1--TYK2	475	216	DNMT1	7402	chr19:10292717:-	TYK2	53838	chr19:10469978:-	ONLY_REF_SPLICE	YES	173	189	0.8	0.79	4.4191	2.0095	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,TYK2->chr19:10461209-10491352:-,tyrosine_kinase_2	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	0.8	6.4286	TRUE	0	0	0	1	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	169	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5723	0.2884	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.8607	TRUE	508	994	45	981	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	107	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	229	5	0.32	0.96	0.9955	0.0279	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.96	1.0234	TRUE	519	3926	326	965	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	89	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.828	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.828	TRUE	0	0	0	518	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNMT1--TYK2	42	94	DNMT1	7402	chr19:10292717:-	TYK2	54966	chr19:10468814:-	ONLY_REF_SPLICE	YES	173	226	0.44	0.38	0.3907	0.8745	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,TYK2->chr19:10461209-10491352:-,tyrosine_kinase_2	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.44	1.2652	TRUE	0	0	0	1	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNRC6B--ADSL	42	31	TNRC6B	6221	chr22:40574144:+	ADSL	52444	chr22:40754868:+	ONLY_REF_SPLICE	YES	12	324	0.86	0.18	0.3907	0.2884	NEIGHBORS[10695],TNRC6B->chr22:40440821-40731812:+,trinucleotide_repeat_containing_6B,ADSL->adenylosuccinate_lyase,chr22:40742507-40786467:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.86	0.6791	FALSE	0	0	0	1	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	38	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3535	0.0186	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3721	FALSE	462	80	0	856	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSBP4--NUPL1	33	3	SSBP4	1844	chr19:18530517:+	NUPL1	15377	chr13:25881944:+	ONLY_REF_SPLICE	YES	29	84	0.55	0.3	0.307	0.0279	SSBP4->Oncogene{Bushman},chr19:18529674-18545372:+,single_stranded_DNA_binding_protein_4,NUPL1->chr13:25875662-25923938:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.55	0.3349	TRUE	0	0	0	1	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	58	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	6	0.94	0.92	0.0651	0.5396	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	0.94	0.6047	FALSE	189	492	56	216	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	59	MT-CO3	1666	chrM:9872:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	6	0.98	0.91	0.0465	0.5489	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.98	0.5954	FALSE	189	492	56	216	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	60	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	4	48	0.94	0.57	0.0372	0.5582	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	0.94	0.5954	FALSE	189	492	56	216	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	18	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1675	0.0279	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1954	FALSE	416	2512	207	587	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	18	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1675	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1675	FALSE	230	193	14	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	18	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1675	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1675	FALSE	499	1288	110	792	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNRC6B--ADSL	16	4	TNRC6B	5005	chr22:40552186:+	ADSL	52444	chr22:40754868:+	ONLY_REF_SPLICE	YES	6	324	0.77	0.06	0.1489	0.0372	NEIGHBORS[10695],TNRC6B->chr22:40440821-40731812:+,trinucleotide_repeat_containing_6B,ADSL->adenylosuccinate_lyase,chr22:40742507-40786467:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.77	0.1861	FALSE	0	0	0	1	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	16	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3072	0	0.01	1	0.1489	0.0093	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1582	FALSE	13	9	0	364	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	14	4	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	220	0	0.08	1	0.1302	0.0372	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.1674	TRUE	61	154	6	19	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	47	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	4	0.98	0.93	0.0279	0.4373	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.98	0.4652	FALSE	189	492	56	216	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	14	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.77	1	0.1302	0.0279	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.1581	FALSE	189	492	56	216	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	13	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	3316	0	0	1	0.1209	0.0093	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1302	TRUE	0	0	0	100	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPO--MT-CO3	12	5	MPO	9226	chr17:56348133:-	MT-CO3	13501	chrM:9565:+	INCL_NON_REF_SPLICE	YES	9015	12994	0	0	0.1116	0.0465	MPO->chr17:56347217-56358296:-,myeloperoxidase,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1581	FALSE	0	0	0	3	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	39	MT-CO3	1063	chrM:9269:+	MT-ATP6	5333	chrM:9075:+	INCL_NON_REF_SPLICE	YES	1	3	0.98	0.93	0.0279	0.3628	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.98	0.3907	FALSE	189	492	56	216	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-12O2.1	12	1	G3BP1	1992	chr5:151151597:+	CTB-12O2.1	31250	chr5:151575002:+	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.1116	0.0093	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-12O2.1->chr5:151329132-151650009:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.1209	TRUE	0	1	0	2	1	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	11	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13374	6	0	0.67	0.1023	0.0093	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.67	0.1116	FALSE	231	217	16	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	8	10	MT-ND1	1435	chrM:3741:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	62	0	0.23	1	0.0744	0.093	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.1674	FALSE	114	26	4	85	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	10	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13188	23	0	0.34	0.093	0.0186	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.34	0.1116	FALSE	231	217	16	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.093	0.0093	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.1023	FALSE	499	1288	110	792	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	10	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.093	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.093	FALSE	351	233	23	137	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	10	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.093	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.093	FALSE	230	198	14	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--GSE1	9	3	PVT1	1202	chr8:128806980:+	GSE1	30817	chr16:85667520:+	ONLY_REF_SPLICE	YES	174	13	0.06	0.48	0.0837	0.0279	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.48	0.1116	TRUE	0	0	0	1	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0837	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0837	FALSE	499	1288	110	792	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--GSE1	8	1	PVT1	1202	chr8:128806980:+	GSE1	32036	chr16:85682158:+	ONLY_REF_SPLICE	YES	174	74	0.05	0.11	0.0744	0.0093	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.11	0.0837	TRUE	0	0	0	1	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LAS1L--NCL	8	0	LAS1L	13911	chrX:64737973:-	NCL	25282	chr2:232325470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0744	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0744	TRUE	0	0	0	3	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPO--MT-ND4	7	3	MPO	3868	chr17:56355429:-	MT-ND4	13245	chrM:10862:+	INCL_NON_REF_SPLICE	YES	14094	63	0	0.14	0.0651	0.0279	MPO->chr17:56347217-56358296:-,myeloperoxidase,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.14	0.093	FALSE	0	0	0	1	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPO--MT-ND4	6	6	MPO	3901	chr17:56355396:-	MT-ND4	13284	chrM:10901:+	INCL_NON_REF_SPLICE	YES	14077	3683	0	0	0.0558	0.0558	MPO->chr17:56347217-56358296:-,myeloperoxidase,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1116	FALSE	0	0	0	1	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	9	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	9	0	0.61	1	0.0465	0.0837	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	1	0.1302	FALSE	189	492	56	216	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--SEPT7	7	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0651	TRUE	1	1	0	18	1	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LAS1L--NCL	7	0	LAS1L	13911	chrX:64737973:-	NCL	24363	chr2:232326389:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0651	TRUE	0	0	0	3	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	0	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0651	FALSE	231	217	16	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	0	MT-ND4	1244	chrM:11003:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0651	FALSE	231	204	14	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	3	MT-ND4	1818	chrM:11577:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	13362	0	0	1	0.0558	0.0279	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0837	FALSE	231	217	16	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	3	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	13444	0	0	1	0.0558	0.0279	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0837	FALSE	231	217	16	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	2	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13100	0	0	1	0.0558	0.0186	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0744	FALSE	231	217	16	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	6	2	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	220	2	0.04	0.8	0.0558	0.0186	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.8	0.0744	TRUE	30	67	4	15	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	6	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0558	0.0186	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0744	FALSE	515	4851	409	746	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3100	0	0	1	0.0558	0.0093	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0651	FALSE	13	9	0	364	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	4	9	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	11	0	0.54	1	0.0372	0.0837	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	1	0.1209	FALSE	114	26	4	85	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-TL1	5	5	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0465	0.0465	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.093	FALSE	210	95	5	49	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	FALSE	230	198	14	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HLA-A--MT-ND1	5	3	HLA-A	2742	chr6:29910778:+	MT-ND1	8756	chrM:3437:+	INCL_NON_REF_SPLICE	YES	2763	5	0	0.62	0.0465	0.0279	HLA-A->chr6:29909037-29913661:+,major_histocompatibility_complex,_class_I,_A,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.62	0.0744	FALSE	1	0	0	11	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	5	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	1	0.73	0.89	0.0465	0.0279	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.89	0.0744	FALSE	16	356	14	466	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASXL1--ZBTB16	5	2	ASXL1	16946	chr20:31023650:+	ZBTB16	37065	chr11:114112889:+	INCL_NON_REF_SPLICE	YES	134	54	0.05	0.11	0.0465	0.0186	ASXL1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},additional_sex_combs_like_1,_transcriptional_regulator,chr20:30946155-31027122:+,ZBTB16->Oncogene{Bushman},chr11:113930315-114121398:+,zinc_finger_and_BTB_domain_containing_16	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.11	0.0651	TRUE	0	0	0	1	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	6	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	1	0	0.91	1	0.0372	0.0558	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.093	FALSE	209	205	15	279	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0.0093	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	FALSE	499	1288	110	792	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-12O2.1	5	0	G3BP1	1992	chr5:151151597:+	CTB-12O2.1	34474	chr5:151646826:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0465	0	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-12O2.1->chr5:151329132-151650009:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0465	TRUE	0	2	0	2	2	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LAS1L--NCL	5	0	LAS1L	13887	chrX:64737997:-	NCL	25264	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0465	TRUE	0	0	0	3	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LAS1L--NCL	5	0	LAS1L	13890	chrX:64737994:-	NCL	25276	chr2:232325476:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0465	TRUE	0	0	0	3	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0465	FALSE	231	205	14	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0465	TRUE	0	0	0	518	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	3	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	13346	0	0	1	0.0372	0.0279	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0651	FALSE	231	217	16	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPO--MT-CO3	3	6	MPO	9235	chr17:56348124:-	MT-CO3	13509	chrM:9573:+	INCL_NON_REF_SPLICE	YES	9240	12768	0	0	0.0279	0.0558	MPO->chr17:56347217-56358296:-,myeloperoxidase,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0837	FALSE	0	0	0	3	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	2	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12764	23	0	0.21	0.0372	0.0186	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.21	0.0558	FALSE	231	217	16	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	2	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	13405	0	0	1	0.0372	0.0186	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0558	FALSE	231	217	16	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0372	0.0186	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	FALSE	462	80	0	856	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	FALSE	189	492	56	216	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	FALSE	189	492	56	216	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	2283	chrM:12042:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	38	23	0.16	0.23	0.0279	0.0372	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.23	0.0651	FALSE	213	207	15	279	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13922	0	0	1	0.0279	0.0372	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0651	FALSE	231	217	16	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1	6	0.88	0.54	0.0279	0.0372	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.88	0.0651	FALSE	209	205	15	279	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	FALSE	499	1288	110	792	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	4	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	FALSE	93	270	15	244	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	3	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0.0279	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0558	FALSE	499	1288	110	792	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	3	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	3	1	0.67	0.86	0.0279	0.0279	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.86	0.0558	FALSE	0	9	0	55	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPO--MT-CO3	3	2	MPO	2928	chr17:56356369:-	MT-CO3	13528	chrM:9592:+	INCL_NON_REF_SPLICE	NO	14440	11863	0	0	0.0279	0.0186	MPO->chr17:56347217-56358296:-,myeloperoxidase,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0465	FALSE	0	0	0	1	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	1	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0279	0.0093	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0372	FALSE	189	492	56	216	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	13370	794	0	0.01	0.0279	0.0093	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0372	FALSE	231	217	16	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	13593	1389	0	0	0.0279	0.0093	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0372	FALSE	231	217	16	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPO--MT-ND4	3	0	MPO	2829	chr17:56356468:-	MT-ND4	14241	chrM:11858:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	MPO->chr17:56347217-56358296:-,myeloperoxidase,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	FALSE	0	0	0	1	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1452	chrM:11211:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	FALSE	231	217	16	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	FALSE	231	217	16	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	FALSE	231	217	16	283	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	TRUE	0	0	0	434	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	TRUE	0	0	0	434	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	TRUE	458	1351	185	561	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAGLN2--MT-ATP8	3	0	TAGLN2	6231	chr1:159888394:-	MT-ATP8	9799	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0279	0	TAGLN2->chr1:159887897-159895522:-,transgelin_2,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	FALSE	1	0	0	2	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	1	6	RP11-353N4.6	11122	chr1:149616111:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	181	0	0.04	1	0.0093	0.0558	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0651	TRUE	15	45	2	3	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0.0186	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0372	FALSE	407	2205	196	549	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B2M--GNAS	2	0	B2M	1137	chr15:45003811:+	GNAS	25752	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Whole_Blood=[count:8=pct:6.1],Blood=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6],Lung=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=18;pct=0.21%;dist=Whole_Blood=9,Lung=3,Pancreas=1,Minor_Salivary_Gland=1,Thyroid=1,Cells_-_EBV-transformed_lymphocytes=1,Muscle_-_Skeletal=1,Colon_-_Transverse=1},B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	14	13	1	7	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B2M--TSTA3	2	0	B2M	1137	chr15:45003811:+	TSTA3	11241	chr8:144698893:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,TSTA3->chr8:144694788-144700218:-,tissue_specific_transplantation_antigen_P35B	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNAI2--YY1AP1	2	0	GNAI2	7094	chr3:50273885:+	YY1AP1	22396	chr1:155649303:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	GNAI2->G_protein_subunit_alpha_i2,Oncogene{Bushman},chr3:50263724-50296787:+,YY1AP1->YY1_associated_protein_1,chr1:155629237-155658791:-	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MCM5--KAT2A	2	0	MCM5	18815	chr22:35819334:+	KAT2A	26860	chr17:40270421:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	MCM5->Oncogene{Bushman},chr22:35796056-35821423:+,minichromosome_maintenance_complex_component_5,KAT2A->chr17:40265126-40273376:-,lysine_acetyltransferase_2A	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	465	1949	224	605	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--GSE1	1	3	PVT1	6936	chr8:128867565:+	GSE1	30817	chr16:85667520:+	ONLY_REF_SPLICE	YES	181	13	0.02	0.24	0.0093	0.0279	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.24	0.0372	TRUE	0	0	0	1	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	3	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	2	1	0.67	0.8	0.0093	0.0279	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.8	0.0372	FALSE	2	31	0	60	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0093	0.0186	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0279	FALSE	467	2173	244	435	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CFD--IVNS1ABP	1	1	CFD	3504	chr19:861956:+	IVNS1ABP	14340	chr1:185274775:-	ONLY_REF_SPLICE	YES	914	175	0	0.01	0.0093	0.0093	CFD->chr19:859453-863453:+,complement_factor_D_(adipsin),IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000373
SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS20--RPS4X	1	1	RPS20	1130	chr8:56986940:-	RPS4X	9998	chrX:71496084:-	ONLY_REF_SPLICE	YES	1325	15	0	0.12	0.0093	0.0093	HGNC_GENEFAM,RPS20->chr8:56979854-56987069:-,ribosomal_protein_S20,RPS4X->chrX:71475529-71497150:-,ribosomal_protein_S4,_X-linked	SKM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.12	0.0186	FALSE	0	6	0	1	3	FALSE	ACH-000373
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	307	302	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	4	0	0.99	1	3.9075	3.8439	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	7.7514	TRUE	0	2	1	16	2	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMP2K--FRAS1	200	15	BMP2K	1380	chr4:79697875:+	FRAS1	110355	chr4:79455603:+	ONLY_REF_SPLICE	YES	7	5	0.97	0.98	2.5456	0.1909	BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+,FRAS1->Fraser_extracellular_matrix_complex_subunit_1,chr4:78978724-79465423:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	0.98	2.7365	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--PHF12	174	58	FAM222B	5825	chr17:27117396:-	PHF12	30355	chr17:27241055:-	ONLY_REF_SPLICE	YES	16	31	0.94	0.88	2.2147	0.7382	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.94	2.9529	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXNC1--CRADD	106	55	PLXNC1	2311	chr12:94543809:+	CRADD	56741	chr12:94287826:+	ONLY_REF_SPLICE	YES	70	21	0.7	0.88	1.3492	0.7	PLXNC1->chr12:94542499-94701451:+,plexin_C1,CRADD->CASP2_and_RIPK1_domain_containing_adaptor_with_death_domain,chr12:94071151-94288616:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.88	2.0492	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLG1--UHRF1	79	61	DLG1	5122	chr3:197009550:-	UHRF1	47783	chr19:4929234:+	ONLY_REF_SPLICE	YES	31	149	0.82	0.48	1.0055	0.7764	DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component,UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.82	1.7819	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC6--LEPR	75	54	DNAJC6	2273	chr1:65720332:+	LEPR	34245	chr1:66031229:+	ONLY_REF_SPLICE	YES	139	429	0.48	0.23	0.9546	0.6873	NEIGHBORS[4696],DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+,LEPR->chr1:65886248-66107242:+,leptin_receptor	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.48	1.6419	FALSE	0	0	0	2	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	5	297	BCR	20761	chr22:23631808:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	4	0	0.99	1	0.0636	3.7802	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	3.8438	TRUE	0	2	1	16	2	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AP000345.1	76	1	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	7	0	0.92	1	0.9673	0.0127	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.98	TRUE	4	17	0	31	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA4--AC104820.2	58	24	ITGA4	2116	chr2:182323044:+	AC104820.2	48720	chr2:182227414:+	ONLY_REF_SPLICE	YES	109	2	0.43	0.98	0.7382	0.3055	LOCAL_REARRANGEMENT:+:[57643],ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4,AC104820.2->chr2:181966659-182264286:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.98	1.0437	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC27--RP11-488P3.1	56	25	CDC27	20923	chr17:45199810:-	RP11-488P3.1	29487	chr1:94219902:-	ONLY_REF_SPLICE	YES	151	0	0.35	1	0.7128	0.3182	CDC27->Oncogene{Bushman},cell_division_cycle_27,chr17:45195069-45266788:-,RP11-488P3.1->chr1:94218480-94241000:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	1	1.031	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	47	29	ABL1	1510	chr9:133589842:+	BCR	40306	chr22:23632526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.5982	0.3691	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9673	TRUE	0	0	0	6	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	53	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6746	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6746	TRUE	0	0	0	518	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	44	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.56	0.2291	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7891	TRUE	508	994	45	981	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--PHF12	44	5	FAM222B	2441	chr17:27169700:-	PHF12	30355	chr17:27241055:-	ONLY_REF_SPLICE	YES	1	31	0.98	0.61	0.56	0.0636	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.98	0.6236	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	28	44	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	99	34	0.42	0.68	0.3564	0.56	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.68	0.9164	TRUE	267	562	48	632	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	37	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4709	0.1018	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5727	FALSE	462	80	0	856	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HERC2P3--NBEAP1	27	33	HERC2P3	14978	chr15:20657621:-	NBEAP1	33237	chr15:20876597:-	ONLY_REF_SPLICE	YES	1378	0	0.04	1	0.3437	0.42	HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3,NBEAP1->Oncogene{Bushman},chr15:20862967-20893737:-,neurobeachin_pseudogene_1	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.7637	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA4--AC104820.2	24	40	ITGA4	2116	chr2:182323044:+	AC104820.2	47584	chr2:182218935:+	ONLY_REF_SPLICE	YES	109	0	0.37	1	0.3055	0.5091	LOCAL_REARRANGEMENT:+:[57643],ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4,AC104820.2->chr2:181966659-182264286:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	1	0.8146	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--GSDMC	32	7	CCDC26	2447	chr8:130587128:-	GSDMC	19378	chr8:130764393:-	ONLY_REF_SPLICE	YES	10	2	0.8	0.95	0.4073	0.0891	LOCAL_REARRANGEMENT:-:[67957],CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,GSDMC->chr8:130760442-130799134:-,gasdermin_C	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.95	0.4964	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	31	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	131	3	0.2	0.91	0.3946	0.0127	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.91	0.4073	TRUE	519	3926	326	965	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC6A6--LSM3	12	74	SLC6A6	1280	chr3:14444355:+	LSM3	30553	chr3:14239536:+	ONLY_REF_SPLICE	NO	79	666	0.52	0.11	0.1527	0.9419	SLC6A6->chr3:14444076-14530857:+,solute_carrier_family_6_member_6,LSM3->LSM3_homolog,_U6_small_nuclear_RNA_and_mRNA_degradation_associated,chr3:14219858-14242619:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.52	1.0946	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SAMHD1--RBL1	24	13	SAMHD1	14148	chr20:35532560:-	RBL1	45547	chr20:35627332:-	ONLY_REF_SPLICE	YES	35	23	0.51	0.62	0.3055	0.1655	LOCAL_INVERSION:-:-,chr20:[44506],SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-,RBL1->Oncogene{Bushman},chr20:35624752-35724398:-,chr20:35724188-35725581:+,retinoblastoma-like_1	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.62	0.471	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	23	14	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	95	1	0.28	0.2927	0.1782	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	1	0.4709	TRUE	465	1949	224	605	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	17	34	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	95	35	0.35	0.59	0.2164	0.4328	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.59	0.6492	TRUE	267	562	48	632	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC57--CSNK1D	23	10	CCDC57	24489	chr17:80109436:-	CSNK1D	47164	chr17:80213453:-	ONLY_REF_SPLICE	YES	21	375	0.61	0.08	0.2927	0.1273	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_REARRANGEMENT:-:[26193],CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.61	0.42	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP48--HSPG2	23	7	USP48	30242	chr1:22013684:-	HSPG2	58884	chr1:22190706:-	ONLY_REF_SPLICE	YES	134	15	0.18	0.67	0.2927	0.0891	LOCAL_REARRANGEMENT:-:[38639],USP48->chr1:22004791-22110099:-,ubiquitin_specific_peptidase_48,HSPG2->Oncogene{Bushman},chr1:22148738-22263790:-,heparan_sulfate_proteoglycan_2	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.67	0.3818	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	24	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	10775	7	0	0.79	0.3055	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.79	0.331	FALSE	230	193	14	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	17	19	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	21	1	0.63	0.2164	0.2418	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	1	0.4582	TRUE	458	1351	185	561	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	16	14	CCDC26	6922	chr8:130365050:-	LINC00977	12110	chr8:130235615:-	INCL_NON_REF_SPLICE	YES	70	0	0.3	1	0.2036	0.1782	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.3818	TRUE	0	0	0	4	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC6--LEPR	6	54	DNAJC6	2273	chr1:65720332:+	LEPR	34230	chr1:66031214:+	INCL_NON_REF_SPLICE	YES	139	431	0.3	0.12	0.0764	0.6873	NEIGHBORS[4696],DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+,LEPR->chr1:65886248-66107242:+,leptin_receptor	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.3	0.7637	FALSE	0	0	0	2	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA4--AC104820.2	8	42	ITGA4	2116	chr2:182323044:+	AC104820.2	45346	chr2:182205773:+	ONLY_REF_SPLICE	YES	109	0	0.31	1	0.1018	0.5346	LOCAL_REARRANGEMENT:+:[57643],ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4,AC104820.2->chr2:181966659-182264286:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	1	0.6364	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMP2K--FRAS1	13	16	BMP2K	1412	chr4:79697907:+	FRAS1	110355	chr4:79455603:+	INCL_NON_REF_SPLICE	YES	27	5	0.52	0.85	0.1655	0.2036	BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+,FRAS1->Fraser_extracellular_matrix_complex_subunit_1,chr4:78978724-79465423:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.85	0.3691	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC6--LEPR	3	55	DNAJC6	3465	chr1:65730615:+	LEPR	34245	chr1:66031229:+	ONLY_REF_SPLICE	YES	161	429	0.26	0.12	0.0382	0.7	NEIGHBORS[4696],DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+,LEPR->chr1:65886248-66107242:+,leptin_receptor	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.26	0.7382	FALSE	0	0	0	2	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-12O2.1	15	4	G3BP1	1992	chr5:151151597:+	CTB-12O2.1	31250	chr5:151575002:+	ONLY_REF_SPLICE	YES	0	2	1	0.9	0.1909	0.0509	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-12O2.1->chr5:151329132-151650009:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.2418	TRUE	0	1	0	2	1	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00534--DECR1	12	16	LINC00534	2350	chr8:91258498:+	DECR1	22646	chr8:91054956:+	ONLY_REF_SPLICE	YES	73	254	0.28	0.1	0.1527	0.2036	LINC00534->chr8:91233716-91581546:+,long_intergenic_non-protein_coding_RNA_534,DECR1->2,4-dienoyl-CoA_reductase_1,_mitochondrial,chr8:91013633-91064320:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.28	0.3563	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	15	4	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13098	9	0	0.68	0.1909	0.0509	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.68	0.2418	FALSE	231	205	14	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ND4L	12	14	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1778	0	0.01	1	0.1527	0.1782	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.3309	FALSE	1	1	0	107	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXK2--NARF	14	6	FOXK2	11869	chr17:80545148:+	NARF	27087	chr17:80417868:+	ONLY_REF_SPLICE	YES	309	236	0.06	0.08	0.1782	0.0764	LOCAL_REARRANGEMENT:+:[29176],FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,NARF->chr17:80416056-80448413:+,nuclear_prelamin_A_recognition_factor	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.08	0.2546	TRUE	0	0	0	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	11	16	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13684	96	0	0.22	0.14	0.2036	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.22	0.3436	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXNC1--CRADD	1	56	PLXNC1	10187	chr12:94613939:+	CRADD	53830	chr12:94243746:+	ONLY_REF_SPLICE	YES	104	38	0.35	0.6	0.0127	0.7128	PLXNC1->chr12:94542499-94701451:+,plexin_C1,CRADD->CASP2_and_RIPK1_domain_containing_adaptor_with_death_domain,chr12:94071151-94288616:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.6	0.7255	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXNC1--CRADD	1	56	PLXNC1	4255	chr12:94551986:+	CRADD	56741	chr12:94287826:+	ONLY_REF_SPLICE	NO	73	21	0.44	0.73	0.0127	0.7128	PLXNC1->chr12:94542499-94701451:+,plexin_C1,CRADD->CASP2_and_RIPK1_domain_containing_adaptor_with_death_domain,chr12:94071151-94288616:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.73	0.7255	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF5A--YBX2	14	3	EIF5A	1754	chr17:7211071:+	YBX2	10514	chr17:7196857:-	ONLY_REF_SPLICE	YES	856	3	0.02	0.85	0.1782	0.0382	LOCAL_INVERSION:+:-:[12384],EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A,YBX2->Y-box_binding_protein_2,chr17:7191571-7197934:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.85	0.2164	TRUE	0	0	0	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-12O2.1	14	3	G3BP1	1992	chr5:151151597:+	CTB-12O2.1	34474	chr5:151646826:+	ONLY_REF_SPLICE	YES	0	27	1	0.39	0.1782	0.0382	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-12O2.1->chr5:151329132-151650009:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.2164	TRUE	0	2	0	2	2	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXNC1--RP11-1060G2.2	14	3	PLXNC1	2311	chr12:94543809:+	RP11-1060G2.2	44127	chr12:94340839:+	INCL_NON_REF_SPLICE	YES	70	12	0.2	0.59	0.1782	0.0382	PLXNC1->chr12:94542499-94701451:+,plexin_C1,RP11-1060G2.2->chr12:94338817-94341589:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.59	0.2164	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--PHF12	9	20	FAM222B	3499	chr17:27161311:-	PHF12	30355	chr17:27241055:-	ONLY_REF_SPLICE	YES	3	31	0.91	0.48	0.1146	0.2546	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.91	0.3692	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HERC2P3--NBEAP1	9	18	HERC2P3	13995	chr15:20658604:-	NBEAP1	33237	chr15:20876597:-	ONLY_REF_SPLICE	YES	1232	0	0.02	1	0.1146	0.2291	HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3,NBEAP1->Oncogene{Bushman},chr15:20862967-20893737:-,neurobeachin_pseudogene_1	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.3437	TRUE	0	0	0	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1655	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1655	TRUE	0	0	0	434	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA4--AC104820.2	2	40	ITGA4	2116	chr2:182323044:+	AC104820.2	46430	chr2:182206885:+	ONLY_REF_SPLICE	YES	109	0	0.28	1	0.0255	0.5091	LOCAL_REARRANGEMENT:+:[57643],ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4,AC104820.2->chr2:181966659-182264286:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	1	0.5346	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	34	MT-ND4	2258	chrM:12017:+	MT-ATP8	5406	chrM:8393:+	INCL_NON_REF_SPLICE	YES	1400	0	0.03	1	0.0382	0.4328	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.471	FALSE	216	209	16	281	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	21	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	13986	0	0	1	0.0764	0.2673	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3437	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AP000345.1	10	2	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	18	0	0.4	1	0.1273	0.0255	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.1528	TRUE	0	8	0	37	1	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	10	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10863	9	0	0.57	0.1273	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.57	0.1528	FALSE	230	198	14	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	14	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	16386	0	0	1	0.0891	0.1782	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2673	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	8	10	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	17501	821	0	0.02	0.1018	0.1273	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.2291	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	8	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1018	0.1273	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2291	FALSE	462	80	0	856	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	8	8	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.1018	0.1018	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.2036	FALSE	16	356	14	466	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	27	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	12687	0	0	1	0.0382	0.3437	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3819	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	27	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	13756	0	0	1	0.0382	0.3437	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3819	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	27	MT-ND4	1959	chrM:11718:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	13132	0	0	1	0.0382	0.3437	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3819	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	27	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13503	0	0	1	0.0382	0.3437	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3819	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	27	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	13633	0	0	1	0.0382	0.3437	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3819	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	9	3	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1426	0	0.01	1	0.1146	0.0382	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1528	FALSE	0	0	0	189	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	18	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	11916	261	0	0.08	0.0636	0.2291	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.2927	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	26	MT-ND4	1875	chrM:11634:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	14657	0	0	1	0.0382	0.3309	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3691	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.1146	0.0127	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1273	FALSE	499	1288	110	792	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	9	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.1146	0.0127	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.1273	FALSE	292	1546	117	613	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNMT3A--DTNB	9	0	DNMT3A	1765	chr2:25564695:-	DTNB	42221	chr2:25754466:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1146	0	LOCAL_REARRANGEMENT:-:[34608],DNMT3A->ArcherDX_panel,DNA_(cytosine-5-)-methyltransferase_3_alpha,FoundationOne_panel,Oncogene{Bushman},chr2:25455845-25565459:-,DTNB->chr2:25600067-25896503:-,dystrobrevin_beta	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1146	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCTD21--GAB2	9	0	KCTD21	1250	chr11:77899619:-	GAB2	17492	chr11:77991947:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1146	0	LOCAL_REARRANGEMENT:-:[26475],KCTD21->chr11:77882295-77899868:-,potassium_channel_tetramerization_domain_containing_21,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1146	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	15	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	16290	0	0	1	0.0636	0.1909	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2545	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--PHF12	2	26	FAM222B	4726	chr17:27139227:-	PHF12	30355	chr17:27241055:-	ONLY_REF_SPLICE	YES	11	31	0.72	0.47	0.0255	0.3309	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.72	0.3564	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	18	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11916	96	0	0.19	0.0509	0.2291	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.19	0.28	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	6	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	16349	1652	0	0.01	0.0891	0.0764	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1655	FALSE	231	205	14	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	14	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	15695	0	0	1	0.0636	0.1782	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2418	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	10	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0764	0.1273	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2037	FALSE	462	80	0	856	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IFI27--MT-ND4L	7	5	IFI27	8929	chr14:94582869:+	MT-ND4L	12095	chrM:10471:+	INCL_NON_REF_SPLICE	YES	602	0	0.02	1	0.0891	0.0636	IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.1527	FALSE	0	0	0	13	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	21	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	13592	0	0	1	0.0382	0.2673	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3055	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	5	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0891	0.0636	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1527	FALSE	499	1288	110	792	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	11	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	14159	1652	0	0.01	0.0636	0.14	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.2036	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0764	0.0891	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1655	FALSE	499	1288	110	792	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	10775	9	0	0.5	0.0891	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.5	0.1146	FALSE	230	193	14	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	2	MT-ND4	1195	chrM:10954:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9888	96	0	0.09	0.0891	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.1146	FALSE	230	193	14	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	14	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	15674	0	0	1	0.0509	0.1782	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2291	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	7	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0891	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0891	TRUE	0	0	0	81	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	12	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	14010	9	0	0.64	0.0509	0.1527	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.64	0.2036	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	4	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0764	0.0509	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1273	FALSE	499	1288	110	792	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	11	MT-ND4	1523	chrM:11282:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	17537	1	0	0.94	0.0509	0.14	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.94	0.1909	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	11	MT-ND4	1517	chrM:11276:+	MT-ATP8	5468	chrM:8455:+	INCL_NON_REF_SPLICE	YES	16988	1	0	0.94	0.0509	0.14	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.94	0.1909	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	14	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	15700	0	0	1	0.0382	0.1782	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2164	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	14	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	15674	0	0	1	0.0382	0.1782	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2164	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	14	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	15700	0	0	1	0.0382	0.1782	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2164	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SREBF2--XRCC6	5	6	SREBF2	18573	chr22:42293165:+	XRCC6	37588	chr22:42049533:+	ONLY_REF_SPLICE	YES	202	707	0.05	0.02	0.0636	0.0764	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.14	TRUE	0	0	0	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	13	MT-ND4	1453	chrM:11212:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	16206	0	0	1	0.0382	0.1655	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2037	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND2	6	0	MT-ND4	1285	chrM:11044:+	MT-ND2	6278	chrM:5369:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0764	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[5249],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0764	FALSE	28	42	3	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	5	3	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1412	0	0.01	1	0.0636	0.0382	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1018	FALSE	0	0	0	189	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FTH1--ACTB	5	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	3687	1	0	0.86	0.0636	0.0127	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.86	0.0763	FALSE	1	0	0	97	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	9	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0382	0.1146	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1528	FALSE	0	9	0	55	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMP2K--FRAS1	1	16	BMP2K	18691	chr4:79808438:+	FRAS1	87264	chr4:79391132:+	ONLY_REF_SPLICE	YES	108	2	0.14	0.89	0.0127	0.2036	BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+,FRAS1->Fraser_extracellular_matrix_complex_subunit_1,chr4:78978724-79465423:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.89	0.2163	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00534--DECR1	1	16	LINC00534	2350	chr8:91258498:+	DECR1	15014	chr8:91029352:+	ONLY_REF_SPLICE	YES	73	47	0.19	0.27	0.0127	0.2036	LINC00534->chr8:91233716-91581546:+,long_intergenic_non-protein_coding_RNA_534,DECR1->2,4-dienoyl-CoA_reductase_1,_mitochondrial,chr8:91013633-91064320:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.27	0.2163	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	8	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	13684	2047	0	0.01	0.0382	0.1018	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.14	FALSE	231	217	16	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	8	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0382	0.1018	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.14	FALSE	499	1288	110	792	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFE2--MT-ATP8	5	0	NFE2	5852	chr12:54687036:-	MT-ATP8	10096	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0636	0	NFE2->chr12:54685895-54694905:-,nuclear_factor,_erythroid_2,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0636	FALSE	0	0	0	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXNC1--RP11-1060G2.2	4	4	PLXNC1	26963	chr12:94659001:+	RP11-1060G2.2	44127	chr12:94340839:+	INCL_NON_REF_SPLICE	YES	66	12	0.11	0.4	0.0509	0.0509	PLXNC1->chr12:94542499-94701451:+,plexin_C1,RP11-1060G2.2->chr12:94338817-94341589:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.4	0.1018	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WASF3--XPO4	5	0	WASF3	1117	chr13:27131956:+	XPO4	21840	chr13:21437262:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0636	0	WASF3->WAS_protein_family_member_3,chr13:27131840-27263085:+,XPO4->chr13:21351469-21477187:-,exportin_4	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0636	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND2	4	3	MT-ND4	1514	chrM:11273:+	MT-ND2	5740	chrM:4831:+	INCL_NON_REF_SPLICE	YES	16857	13820	0	0	0.0509	0.0382	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[5249],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0891	FALSE	28	42	3	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	2	MT-ND4	1244	chrM:11003:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	11234	821	0	0.01	0.0509	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0764	FALSE	231	204	14	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	2	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	13002	1192	0	0.01	0.0509	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0764	FALSE	231	205	14	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	5	CCDC26	6922	chr8:130365050:-	LINC00977	13259	chr8:130229652:-	INCL_NON_REF_SPLICE	YES	70	16	0.1	0.33	0.0382	0.0636	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.33	0.1018	TRUE	0	0	0	6	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	1	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	12848	1957	0	0	0.0509	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0636	FALSE	231	205	14	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0509	0.0127	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0636	FALSE	499	1288	110	792	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SIGLEC12--CIB3	4	1	SIGLEC12	4772	chr19:52001272:-	CIB3	15204	chr19:16272297:-	ONLY_REF_SPLICE	YES	94	0	0.05	1	0.0509	0.0127	SIGLEC12->chr19:51994611-52005043:-,sialic_acid_binding_Ig_like_lectin_12_(gene/pseudogene),CIB3->calcium_and_integrin_binding_family_member_3,chr19:16272179-16284336:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0636	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ATP8	4	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0509	FALSE	12	0	0	26	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL5	4	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0509	TRUE	0	0	0	39	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-12O2.1	3	4	G3BP1	1992	chr5:151151597:+	CTB-12O2.1	30533	chr5:151574285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0.0509	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-12O2.1->chr5:151329132-151650009:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0891	TRUE	0	1	0	2	1	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	3	4	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	1	3175	0.88	0	0.0382	0.0509	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.88	0.0891	FALSE	26	124	4	93	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0509	TRUE	0	0	0	434	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRRC2A--FTL	4	0	PRRC2A	7323	chr6:31595650:+	FTL	20243	chr19:49468579:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	PRRC2A->chr6:31588497-31605548:+,proline_rich_coiled-coil_2A,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0509	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	3	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	11293	0	0	1	0.0382	0.0382	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0764	FALSE	231	204	14	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0.0382	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0764	FALSE	462	80	0	856	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2A--MT-CO3	3	3	POLR2A	17068	chr17:7417416:+	MT-CO3	20951	chrM:9572:+	INCL_NON_REF_SPLICE	YES	278	16833	0.02	0	0.0382	0.0382	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0764	FALSE	0	0	0	5	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-857K21.7--MTND2P28	3	3	RP5-857K21.7	1231	chr1:568367:+	MTND2P28	4713	chr1:565050:+	INCL_NON_REF_SPLICE	YES	103	0	0.06	1	0.0382	0.0382	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0764	TRUE	1	0	0	3	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA4--AC104820.2	3	2	ITGA4	2116	chr2:182323044:+	AC104820.2	49952	chr2:182263106:+	ONLY_REF_SPLICE	YES	109	5	0.04	0.5	0.0382	0.0255	LOCAL_REARRANGEMENT:+:[57643],ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4,AC104820.2->chr2:181966659-182264286:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.5	0.0637	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00534--DECR1	2	6	LINC00534	2350	chr8:91258498:+	DECR1	23719	chr8:91057077:+	ONLY_REF_SPLICE	YES	73	213	0.1	0.04	0.0255	0.0764	LINC00534->chr8:91233716-91581546:+,long_intergenic_non-protein_coding_RNA_534,DECR1->2,4-dienoyl-CoA_reductase_1,_mitochondrial,chr8:91013633-91064320:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.1	0.1019	TRUE	0	0	0	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	2	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	11293	517	0	0.01	0.0382	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0637	FALSE	231	204	14	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	2	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	10657	9	0	0.36	0.0382	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.36	0.0637	FALSE	230	193	14	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	2	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	NO	10985	139	0	0.03	0.0382	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0637	FALSE	231	204	14	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	10898	96	0	0.05	0.0382	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0637	FALSE	230	198	14	283	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	0	EIF1	1086	chr17:39845222:+	RPS28	8126	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0382	TRUE	0	0	0	81	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FARS2--RP3-380B8.4	3	0	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0382	FALSE	27	82	4	18	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND2	3	0	MT-ND4	1818	chrM:11577:+	MT-ND2	6278	chrM:5369:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[5249],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0382	FALSE	28	42	3	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0382	TRUE	0	0	0	434	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	3	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0382	FALSE	46	201	11	112	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--GSDMC	1	7	CCDC26	2447	chr8:130587128:-	GSDMC	19634	chr8:130764137:-	ONLY_REF_SPLICE	YES	10	1	0.44	0.89	0.0127	0.0891	LOCAL_REARRANGEMENT:-:[67957],CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,GSDMC->chr8:130760442-130799134:-,gasdermin_C	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.89	0.1018	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBA1--HBG1	2	3	HBA1	1454	chr16:227132:+	HBG1	6249	chr11:5269717:-	ONLY_REF_SPLICE	YES	5732	5943	0	0	0.0255	0.0382	GTEx&tcga_normals:1/3694=0.03%,PROTCLUST,HBA1->chr16:226679-227521:+,hemoglobin_subunit_alpha_1,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0637	FALSE	0	0	0	2	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	7	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	0	0.57	1	0.0127	0.0891	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.1018	FALSE	0	48	1	163	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.21	1	0.0255	0.0255	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.051	FALSE	125	705	46	456	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	2	1	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	10	16	0.23	0.16	0.0255	0.0127	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.23	0.0382	TRUE	0	2	0	11	2	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-634B7.4--TRIM58	2	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	38	1	0.07	0.0255	0.0127	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0382	TRUE	158	633	76	73	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAMK1D--CDC123	2	0	CAMK1D	1429	chr10:12391909:+	CDC123	26630	chr10:12257739:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Blood=[count:1=pct:0.6]},GTEx_v2:{count=3;pct=0.03%;dist=Whole_Blood=3},LOCAL_REARRANGEMENT:+:[98893],CAMK1D->calcium/calmodulin_dependent_protein_kinase_ID,chr10:12391481-12877545:+,CDC123->cell_division_cycle_123,chr10:12237964-12292588:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC27--RP11-488P3.1	1	4	CDC27	18672	chr17:45206759:-	RP11-488P3.1	29487	chr1:94219902:-	ONLY_REF_SPLICE	YES	182	0	0.03	1	0.0127	0.0509	CDC27->Oncogene{Bushman},cell_division_cycle_27,chr17:45195069-45266788:-,RP11-488P3.1->chr1:94218480-94241000:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0636	TRUE	0	0	0	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HERC1--PPIB	2	0	HERC1	1116	chr15:64126026:-	PPIB	91577	chr15:64449108:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,PPIB->chr15:64448011-64455404:-,peptidylprolyl_isomerase_B	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LDHB--GNAS	2	0	LDHB	3396	chr12:21810685:-	GNAS	40398	chr20:57484405:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	LDHB->chr12:21788276-21910791:-,lactate_dehydrogenase_B,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	FALSE	7	44	2	41	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--MYC	2	0	PVT1	8346	chr8:128903244:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0255	TRUE	0	5	0	7	2	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-12O2.1	1	3	G3BP1	1992	chr5:151151597:+	CTB-12O2.1	32340	chr5:151596635:+	ONLY_REF_SPLICE	YES	0	24	1	0.14	0.0127	0.0382	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-12O2.1->chr5:151329132-151650009:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.0509	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-12O2.1	1	3	G3BP1	1992	chr5:151151597:+	CTB-12O2.1	33437	chr5:151610824:+	ONLY_REF_SPLICE	YES	0	27	1	0.13	0.0127	0.0382	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-12O2.1->chr5:151329132-151650009:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.0509	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HERC2P9--NBEA	1	3	HERC2P9	13914	chr15:28887710:+	NBEA	46993	chr13:35683427:+	ONLY_REF_SPLICE	NO	889	2	0	0.67	0.0127	0.0382	HERC2P9->chr15:28834638-28930410:+,hect_domain_and_RLD_2_pseudogene_9,NBEA->chr13:35516424-36247159:+,neurobeachin	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.67	0.0509	FALSE	0	0	0	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	21	0	0.16	1	0.0127	0.0382	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.0509	FALSE	164	806	69	479	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SIGLEC12--CIB3	1	3	SIGLEC12	5441	chr19:52000603:-	CIB3	15204	chr19:16272297:-	ONLY_REF_SPLICE	YES	86	0	0.04	1	0.0127	0.0382	SIGLEC12->chr19:51994611-52005043:-,sialic_acid_binding_Ig_like_lectin_12_(gene/pseudogene),CIB3->calcium_and_integrin_binding_family_member_3,chr19:16272179-16284336:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0509	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SREBF2--XRCC6	1	3	SREBF2	17463	chr22:42290941:+	XRCC6	37588	chr22:42049533:+	ONLY_REF_SPLICE	YES	208	707	0.02	0.01	0.0127	0.0382	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0509	FALSE	0	0	0	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANK1--CAPZA1	1	2	ANK1	5037	chr8:41615554:-	CAPZA1	53132	chr1:113189832:+	ONLY_REF_SPLICE	NO	678	28	0	0.1	0.0127	0.0255	ANK1->ankyrin_1,chr8:41510739-41754280:-,CAPZA1->capping_actin_protein_of_muscle_Z-line_alpha_subunit_1,chr1:113161795-113214241:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.1	0.0382	FALSE	0	0	0	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANK1--MCPH1	1	2	ANK1	2519	chr8:41655030:-	MCPH1	68025	chr8:6478975:+	ONLY_REF_SPLICE	YES	262	77	0.01	0.04	0.0127	0.0255	ANK1->ankyrin_1,chr8:41510739-41754280:-,MCPH1->Oncogene{Bushman},chr8:6264113-6501144:+,microcephalin_1	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0382	FALSE	0	0	0	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-786C10.1--GSE1	1	2	CTC-786C10.1	1532	chr16:85205413:+	GSE1	8143	chr16:85667520:+	ONLY_REF_SPLICE	NO	2	21	0.6	0.12	0.0127	0.0255	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.6	0.0382	TRUE	5	1	0	10	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-786C10.1--GSE1	1	2	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	YES	2	95	0.6	0.03	0.0127	0.0255	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.6	0.0382	TRUE	2	3	0	21	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AP000345.1	1	1	AP003900.6	2187	chr21:11172043:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	NO	12	0	0.14	1	0.0127	0.0127	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.0254	TRUE	1	2	0	16	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--CDH15	1	1	CBFA2T3	1548	chr16:89043065:-	CDH15	29205	chr16:89253837:+	ONLY_REF_SPLICE	NO	180	0	0.01	1	0.0127	0.0127	CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,CDH15->cadherin_15,chr16:89238175-89261900:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FANCM--PRPF39	1	1	FANCM	10114	chr14:45628483:+	PRPF39	34429	chr14:45564424:+	ONLY_REF_SPLICE	YES	16	142	0.11	0.01	0.0127	0.0127	LOCAL_REARRANGEMENT:+:[19658],FANCM->Fanconi_anemia_complementation_group_M,chr14:45605143-45670093:+,PRPF39->chr14:45553302-45585485:+,pre-mRNA_processing_factor_39	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.11	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HERC2P9--NBEA	1	1	HERC2P9	12931	chr15:28886727:+	NBEA	46993	chr13:35683427:+	ONLY_REF_SPLICE	NO	627	2	0	0.5	0.0127	0.0127	HERC2P9->chr15:28834638-28930410:+,hect_domain_and_RLD_2_pseudogene_9,NBEA->chr13:35516424-36247159:+,neurobeachin	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.5	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	1	1	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0127	0.0127	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0254	TRUE	67	49	0	25	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00534--NECAB1	1	1	LINC00534	6170	chr8:91466751:+	NECAB1	11791	chr8:91813919:+	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0127	0.0127	LINC00534->chr8:91233716-91581546:+,long_intergenic_non-protein_coding_RNA_534,NECAB1->N-terminal_EF-hand_calcium_binding_protein_1,chr8:91803778-91971636:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OPA3--ZFP41	1	1	OPA3	2338	chr19:46087881:-	ZFP41	24224	chr8:144341945:+	ONLY_REF_SPLICE	YES	109	28	0.02	0.07	0.0127	0.0127	OPA3->chr19:46030685-46105470:-,optic_atrophy_3_(autosomal_recessive,_with_chorea_and_spastic_paraplegia),ZFP41->ZFP41_zinc_finger_protein,chr8:144328991-144344875:+,chr8:144329280-144358573:+	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.07	0.0254	TRUE	0	0	0	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OTUD6B--TMEM67	1	1	OTUD6B	2094	chr8:92083517:+	TMEM67	30344	chr8:94798451:+	ONLY_REF_SPLICE	NO	263	8	0.01	0.2	0.0127	0.0127	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},OTUD6B->OTU_domain_containing_6B,chr8:92082424-92099323:+,TMEM67->chr8:94767072-94831462:+,transmembrane_protein_67	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.2	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--RPL38	1	1	RPS3	2292	chr11:75111821:+	RPL38	13319	chr17:72200057:+	ONLY_REF_SPLICE	YES	4876	34	0	0.06	0.0127	0.0127	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,RPL38->chr17:72199721-72206794:+,ribosomal_protein_L38	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000072
MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SAMSN1--AF127936.7	1	1	SAMSN1	7882	chr21:15884765:-	AF127936.7	19073	chr21:16230029:-	ONLY_REF_SPLICE	NO	1997	0	0	1	0.0127	0.0127	SAMSN1->SAM_domain,_SH3_domain_and_nuclear_localization_signals_1,chr21:15857549-15955723:-,AF127936.7->chr21:16191164-16254296:-	MEG01_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000072
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	178	43	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4696	0.355	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.8246	TRUE	508	994	45	981	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEF2D--IQGAP3	173	23	MEF2D	1343	chr1:156470278:-	IQGAP3	31092	chr1:156521887:-	ONLY_REF_SPLICE	YES	47	18	0.81	0.92	1.4283	0.1899	LOCAL_REARRANGEMENT:-:[24577],MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,IQGAP3->IQ_motif_containing_GTPase_activating_protein_3,chr1:156495197-156542396:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.92	1.6182	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP6C--SCAI	146	32	PPP6C	3938	chr9:127933364:-	SCAI	34626	chr9:127715232:-	ONLY_REF_SPLICE	YES	102	2	0.64	0.99	1.2054	0.2642	NEIGHBORS[3067],PPP6C->chr9:127908852-127952218:-,protein_phosphatase_6_catalytic_subunit,SCAI->chr9:127704887-127905785:-,suppressor_of_cancer_cell_invasion	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.99	1.4696	FALSE	0	0	0	1	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYO5A--DYM	120	26	MYO5A	1271	chr15:52820977:-	DYM	84734	chr18:46645296:-	ONLY_REF_SPLICE	YES	4	56	0.97	0.72	0.9907	0.2147	MYO5A->chr15:52599480-52821247:-,myosin_VA,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	0.97	1.2054	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	118	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	188	7	0.39	0.95	0.9742	0.033	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.95	1.0072	TRUE	519	3926	326	965	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEC31A--PPIA	102	48	SEC31A	37749	chr4:83742190:-	PPIA	42353	chr7:44836289:+	INCL_NON_REF_SPLICE	YES	134	0	0.53	1	0.8421	0.3963	SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	1	1.2384	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KAT2B--IQSEC1	110	15	KAT2B	2885	chr3:20113951:+	IQSEC1	35790	chr3:12963742:-	ONLY_REF_SPLICE	YES	14	34	0.9	0.79	0.9082	0.1238	KAT2B->chr3:20081515-20195896:+,lysine_acetyltransferase_2B,IQSEC1->IQ_motif_and_Sec7_domain_1,chr3:12938719-13114617:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	0.9	1.032	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXK2--CACNA1A	88	15	FOXK2	10797	chr17:80544076:+	CACNA1A	63096	chr19:13356079:-	ONLY_REF_SPLICE	YES	110	0	0.48	1	0.7265	0.1238	FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	0.8503	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVRAG--AP000462.2	81	19	UVRAG	16943	chr11:75715133:+	AP000462.2	32442	chr11:115247900:+	ONLY_REF_SPLICE	YES	17	0	0.85	1	0.6687	0.1569	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,AP000462.2->chr11:115234348-115248649:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.8256	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGEF11--PLEKHM2	80	22	ARHGEF11	2072	chr1:157014091:-	PLEKHM2	41739	chr1:16042732:+	ONLY_REF_SPLICE	YES	29	7	0.78	0.94	0.6605	0.1816	ARHGEF11->Rho_guanine_nucleotide_exchange_factor_11,chr1:156904632-157015162:-,PLEKHM2->chr1:16010827-16061264:+,pleckstrin_homology_and_RUN_domain_containing_M2	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.94	0.8421	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ROCK2--NTSR2	77	24	ROCK2	2753	chr2:11484122:-	NTSR2	42078	chr2:11798848:-	ONLY_REF_SPLICE	YES	28	6	0.78	0.94	0.6357	0.1981	ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,NTSR2->chr2:11798304-11810290:-,neurotensin_receptor_2	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.94	0.8338	TRUE	0	1	0	1	1	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLEKHM2--ARHGEF11	60	13	PLEKHM2	11253	chr1:16055685:+	ARHGEF11	21837	chr1:156955965:-	ONLY_REF_SPLICE	YES	59	26	0.55	0.74	0.4954	0.1073	PLEKHM2->chr1:16010827-16061264:+,pleckstrin_homology_and_RUN_domain_containing_M2,ARHGEF11->Rho_guanine_nucleotide_exchange_factor_11,chr1:156904632-157015162:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.74	0.6027	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	10	205	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	17	5	0.93	0.98	0.0826	1.6925	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.98	1.7751	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	209	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	21	0	0.91	1	0.0578	1.7255	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	1.7833	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	210	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	23	1	0.9	1	0.0413	1.7337	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	1.775	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	211	MT-ND4	1299	chrM:11058:+	MT-ND4L	5462	chrM:10553:+	INCL_NON_REF_SPLICE	YES	25	0	0.9	1	0.033	1.742	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	1.775	FALSE	344	827	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	211	MT-ND4	2041	chrM:11800:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	NO	9873	6	0.02	0.97	0.033	1.742	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.97	1.775	FALSE	344	826	44	305	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	205	MT-ND4	1216	chrM:10975:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	NO	20	3	0.91	0.99	0.033	1.6925	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.99	1.7255	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	208	MT-ND4	1284	chrM:11043:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	25	6	0.89	0.97	0.0248	1.7172	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.97	1.742	FALSE	344	827	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	21	132	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	3872	3	0.04	0.98	0.1734	1.0898	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.98	1.2632	FALSE	344	827	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	202	MT-ND4	1122	chrM:10881:+	MT-ND4L	5515	chrM:10606:+	INCL_NON_REF_SPLICE	YES	14	5	0.94	0.98	0.0248	1.6677	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	0.98	1.6925	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	197	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	15	3	0.93	0.99	0.0248	1.6264	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.99	1.6512	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	194	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	10	3	0.95	0.98	0.0248	1.6016	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	0.98	1.6264	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2K--PDS5A	44	19	UBE2K	4583	chr4:39757359:+	PDS5A	33258	chr4:39891984:-	ONLY_REF_SPLICE	YES	127	147	0.33	0.3	0.3633	0.1569	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Hippocampus=1,Heart_-_Atrial_Appendage=1},{Klijn_CCL:Lymphoid=1},LOCAL_INVERSION:+:-:[40071],UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,PDS5A->PDS5_cohesin_associated_factor_A,chr4:39824483-39979576:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.33	0.5202	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIP12--DNER	43	19	TRIP12	2538	chr2:230786280:-	DNER	52917	chr2:230456604:-	ONLY_REF_SPLICE	YES	29	0	0.68	1	0.355	0.1569	NEIGHBORS[49280],TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12,DNER->chr2:230222345-230579274:-,delta/notch_like_EGF_repeat_containing	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	1	0.5119	FALSE	0	1	0	1	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	11	141	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	6	0.97	0.96	0.0908	1.1641	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.97	1.2549	FALSE	344	821	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	168	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	8	3	0.96	0.98	0.0248	1.387	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.98	1.4118	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	137	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	11	3	0.93	0.98	0.066	1.1311	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.98	1.1971	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	153	MT-ND4	1216	chrM:10975:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	20	3	0.89	0.98	0.0248	1.2632	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.98	1.288	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	40	4	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	6	0	0.88	1	0.3302	0.033	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.3632	TRUE	5	4	0	46	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	130	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	21	3	0.87	0.98	0.0413	1.0733	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	0.98	1.1146	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	131	MT-ND4	1285	chrM:11044:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	25	3	0.84	0.98	0.033	1.0815	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	0.98	1.1145	FALSE	344	827	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	33	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2724	0.0495	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.3219	FALSE	499	1288	110	792	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-660H19.1--RP11-145M4.3	32	10	RP4-660H19.1	2425	chr1:73316433:-	RP11-145M4.3	10224	chr1:59553687:+	ONLY_REF_SPLICE	YES	3	0	0.93	1	0.2642	0.0826	RP4-660H19.1->chr1:73214604-73364823:-,RP11-145M4.3->chr1:59522315-59553867:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.3468	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTOR--EPGN	33	5	MTOR	26879	chr1:11259315:-	EPGN	60764	chr4:75177902:+	ONLY_REF_SPLICE	YES	21	0	0.64	1	0.2724	0.0413	MTOR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:11166592-11322564:-,mechanistic_target_of_rapamycin,EPGN->chr4:75174190-75181024:+,epithelial_mitogen	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.3137	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	124	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	26	3	0.83	0.98	0.0248	1.0237	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.98	1.0485	FALSE	344	827	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEF2D--IQGAP3	27	25	MEF2D	1343	chr1:156470278:-	IQGAP3	28773	chr1:156526485:-	ONLY_REF_SPLICE	YES	47	5	0.53	0.91	0.2229	0.2064	LOCAL_REARRANGEMENT:-:[24577],MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,IQGAP3->IQ_motif_containing_GTPase_activating_protein_3,chr1:156495197-156542396:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	0.91	0.4293	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ROCK2--NTSR2	23	32	ROCK2	2753	chr2:11484122:-	NTSR2	39713	chr2:11802366:-	ONLY_REF_SPLICE	YES	28	0	0.66	1	0.1899	0.2642	ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,NTSR2->chr2:11798304-11810290:-,neurotensin_receptor_2	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	1	0.4541	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	98	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	19	2	0.85	0.98	0.0495	0.8091	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.98	0.8586	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	106	MT-ND4	1503	chrM:11262:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	285	3	0.28	0.97	0.0248	0.8751	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.97	0.8999	FALSE	344	827	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	29	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2394	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2394	TRUE	46	1352	75	139	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	94	MT-ND4	1144	chrM:10903:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	15	2	0.87	0.98	0.0413	0.7761	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	0.98	0.8174	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	27	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2229	0.0165	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2394	FALSE	462	80	0	856	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLBP--LETM1	25	8	SLBP	4315	chr4:1701291:-	LETM1	23128	chr4:1827410:-	ONLY_REF_SPLICE	YES	318	142	0.09	0.19	0.2064	0.066	LOCAL_REARRANGEMENT:-:[98924],SLBP->chr4:1694527-1714282:-,stem-loop_binding_protein,LETM1->chr4:1813206-1857974:-,leucine_zipper_and_EF-hand_containing_transmembrane_protein_1	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.19	0.2724	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	94	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	23	2	0.81	0.98	0.0248	0.7761	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.98	0.8009	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIP12--DNER	25	4	TRIP12	2222	chr2:230786596:-	DNER	52917	chr2:230456604:-	ONLY_REF_SPLICE	YES	9	0	0.76	1	0.2064	0.033	NEIGHBORS[49280],TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12,DNER->chr2:230222345-230579274:-,delta/notch_like_EGF_repeat_containing	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.2394	FALSE	0	1	0	1	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEC31A--PPIA	11	57	SEC31A	39396	chr4:83739760:-	PPIA	42343	chr7:44836279:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0908	0.4706	SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5614	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	78	MT-ND4	1112	chrM:10871:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	11	2	0.88	0.98	0.0413	0.644	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.98	0.6853	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ROCK2--NTSR2	17	29	ROCK2	2753	chr2:11484122:-	NTSR2	40987	chr2:11800259:-	ONLY_REF_SPLICE	YES	28	5	0.62	0.9	0.1404	0.2394	ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,NTSR2->chr2:11798304-11810290:-,neurotensin_receptor_2	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.9	0.3798	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	10	50	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8981	0	0.01	1	0.0826	0.4128	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.4954	FALSE	328	800	43	304	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	14	33	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	21	0	0.69	1	0.1156	0.2724	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	0.388	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TET3--ALMS1	22	1	TET3	7038	chr2:74307718:+	ALMS1	32608	chr2:73675090:+	ONLY_REF_SPLICE	YES	13	12	0.64	0.66	0.1816	0.0083	TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3,ALMS1->ALMS1,_centrosome_and_basal_body_associated_protein,chr2:73612886-73837920:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.66	0.1899	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	22	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1816	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1816	TRUE	0	0	0	100	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	11	38	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	419	0	0.1	1	0.0908	0.3137	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.4045	FALSE	344	827	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADI1--GPC5	18	9	ADI1	1369	chr2:3523139:-	GPC5	23455	chr13:93518535:+	ONLY_REF_SPLICE	YES	392	0	0.06	1	0.1486	0.0743	ADI1->acireductone_dioxygenase_1,chr2:3501132-3523507:-,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.2229	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	69	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	8	2	0.9	0.97	0.0248	0.5697	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.97	0.5945	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	17	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	64	36	0.31	0.45	0.1404	0.0991	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.45	0.2395	TRUE	267	562	48	632	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DYM--MYO5A	19	4	DYM	28693	chr18:46690055:-	MYO5A	41410	chr15:52725482:-	ONLY_REF_SPLICE	YES	56	8	0.29	0.74	0.1569	0.033	DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin,MYO5A->chr15:52599480-52821247:-,myosin_VA	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.74	0.1899	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP32--PTRH2	19	4	USP32	4918	chr17:58422842:-	PTRH2	50711	chr17:57775339:-	ONLY_REF_SPLICE	YES	11	16	0.68	0.59	0.1569	0.033	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	0.68	0.1899	TRUE	0	0	0	2	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C14orf159--AC004041.2	18	5	C14orf159	4606	chr14:91581338:+	AC004041.2	39567	chr5:131977974:-	ONLY_REF_SPLICE	YES	55	0	0.29	1	0.1486	0.0413	C14orf159->chr14:91526677-91691976:+,chromosome_14_open_reading_frame_159,AC004041.2->chr5:131966281-131999964:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.1899	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	10	37	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	212	0	0.18	1	0.0826	0.3055	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.3881	FALSE	344	827	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	17	9	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1404	0.0743	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.2147	FALSE	499	1288	110	792	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEF2D--IQGAP3	12	27	MEF2D	2397	chr1:156469224:-	IQGAP3	28773	chr1:156526485:-	ONLY_REF_SPLICE	YES	66	5	0.37	0.89	0.0991	0.2229	LOCAL_REARRANGEMENT:-:[24577],MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,IQGAP3->IQ_motif_containing_GTPase_activating_protein_3,chr1:156495197-156542396:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.89	0.322	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	50	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	363	0	0.13	1	0.0495	0.4128	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.4623	FALSE	344	827	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	57	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.033	0.4706	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.5036	FALSE	344	821	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	9	37	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	20	0	0.7	1	0.0743	0.3055	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	1	0.3798	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEC31A--PPIA	5	50	SEC31A	38861	chr4:83740295:-	PPIA	42353	chr7:44836289:+	INCL_NON_REF_SPLICE	YES	133	0	0.29	1	0.0413	0.4128	SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.4541	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	37	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	21	0	0.68	1	0.066	0.3055	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	1	0.3715	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	51	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	6	3	0.9	0.95	0.033	0.4211	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.95	0.4541	FALSE	344	821	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	9	29	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	3	0.93	0.93	0.0743	0.2394	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.93	0.3137	FALSE	344	821	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	49	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	22	0	0.71	1	0.033	0.4045	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.4375	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	15	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11895	16697	0	0	0.1238	0.0083	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1321	FALSE	183	104	9	328	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	49	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	19	0	0.73	1	0.0248	0.4045	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	0.4293	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ALMS1--TET3	15	0	ALMS1	8543	chr2:73659419:+	TET3	46525	chr2:74307625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1238	0	ALMS1->ALMS1,_centrosome_and_basal_body_associated_protein,chr2:73612886-73837920:+,TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1238	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEF2D--IQGAP3	8	25	MEF2D	2397	chr1:156469224:-	IQGAP3	31092	chr1:156521887:-	ONLY_REF_SPLICE	YES	66	18	0.33	0.65	0.066	0.2064	LOCAL_REARRANGEMENT:-:[24577],MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,IQGAP3->IQ_motif_containing_GTPase_activating_protein_3,chr1:156495197-156542396:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.65	0.2724	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND1B--CD46	13	4	DENND1B	7107	chr1:197684161:-	CD46	41298	chr1:207930359:+	ONLY_REF_SPLICE	YES	0	326	1	0.05	0.1073	0.033	DENND1B->DENN_domain_containing_1B,chr1:197473878-197744826:-,CD46->CD46_molecule,Oncogene{Bushman},chr1:207925402-207968858:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.1403	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	12	6	MT-ATP6	1477	chrM:9003:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	8254	15526	0	0	0.0991	0.0495	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1486	FALSE	183	104	9	328	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYO5A--DYM	11	9	MYO5A	1271	chr15:52820977:-	DYM	88190	chr18:46623885:-	ONLY_REF_SPLICE	YES	4	93	0.83	0.18	0.0908	0.0743	MYO5A->chr15:52599480-52821247:-,myosin_VA,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.83	0.1651	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	20	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	26	0	0.52	1	0.066	0.1651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	1	0.2311	FALSE	344	827	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	38	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9932	0	0	1	0.0248	0.3137	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3385	FALSE	343	822	44	305	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	37	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	19	0	0.68	1	0.0248	0.3055	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	1	0.3303	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	20	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	23	0	0.54	1	0.0578	0.1651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	1	0.2229	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	10	7	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	NO	1881	15526	0.01	0	0.0826	0.0578	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1404	FALSE	183	104	9	328	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	10	6	MT-ATP6	1400	chrM:8926:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	12716	15526	0	0	0.0826	0.0495	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1321	FALSE	183	104	9	328	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	11	2	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	43	949	0.23	0.01	0.0908	0.0165	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.23	0.1073	TRUE	0	0	0	434	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	10	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	2	0.93	0.88	0.0826	0.033	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.93	0.1156	FALSE	33	240	4	98	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	11	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0908	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0908	FALSE	13	9	0	364	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEF2A--CTD-2054N24.2	10	4	MEF2A	7933	chr15:100185969:+	CTD-2054N24.2	27706	chr15:100353178:+	ONLY_REF_SPLICE	YES	22	1	0.39	0.93	0.0826	0.033	NEIGHBORS[90557],MEF2A->chr15:100017370-100256671:+,myocyte_enhancer_factor_2A,CTD-2054N24.2->chr15:100347228-100417353:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.93	0.1156	FALSE	0	0	0	1	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	20	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	26	0	0.5	1	0.0495	0.1651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.2146	FALSE	344	827	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	9	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	60	37	0.21	0.3	0.0743	0.0578	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.3	0.1321	TRUE	267	562	48	632	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C14orf159--AC004041.2	10	0	C14orf159	3895	chr14:91580627:+	AC004041.2	39567	chr5:131977974:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0826	0	C14orf159->chr14:91526677-91691976:+,chromosome_14_open_reading_frame_159,AC004041.2->chr5:131966281-131999964:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0826	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP10--NDUFC1	9	3	ARHGAP10	2624	chr4:148744108:+	NDUFC1	39981	chr4:140217114:-	ONLY_REF_SPLICE	YES	7	8	0.63	0.6	0.0743	0.0248	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.63	0.0991	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	9	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	11818	15976	0	0	0.0743	0.0083	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0826	FALSE	183	104	9	328	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0743	FALSE	13	9	0	364	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	24	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	8	0	0.77	1	0.0248	0.1981	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.2229	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	20	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	23	0	0.51	1	0.033	0.1651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	1	0.1981	FALSE	344	826	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0578	0.066	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.1238	FALSE	499	1288	110	792	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	16	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0413	0.1321	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.1734	FALSE	499	1288	110	792	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--FGF1	9	0	RFTN1	12839	chr3:16419225:-	FGF1	32124	chr5:141993726:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0743	0	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,FGF1->Oncogene{Bushman},chr5:141971743-142077617:-,fibroblast_growth_factor_1	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2K--PDS5A	5	12	UBE2K	3500	chr4:39747430:+	PDS5A	33258	chr4:39891984:-	ONLY_REF_SPLICE	YES	135	147	0.11	0.1	0.0413	0.0991	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Hippocampus=1,Heart_-_Atrial_Appendage=1},{Klijn_CCL:Lymphoid=1},LOCAL_INVERSION:+:-:[40071],UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,PDS5A->PDS5_cohesin_associated_factor_A,chr4:39824483-39979576:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.11	0.1404	TRUE	0	0	0	1	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	METTL4--RP11-161I6.2	7	1	METTL4	7729	chr18:2552694:-	RP11-161I6.2	17059	chr18:2239879:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0578	0.0083	METTL4->chr18:2537524-2571508:-,methyltransferase_like_4,RP11-161I6.2->chr18:1883525-2240847:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0661	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2K--PDS5A	7	1	UBE2K	1347	chr4:39700010:+	PDS5A	33258	chr4:39891984:-	ONLY_REF_SPLICE	YES	36	147	0.18	0.05	0.0578	0.0083	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Hippocampus=1,Heart_-_Atrial_Appendage=1},{Klijn_CCL:Lymphoid=1},LOCAL_INVERSION:+:-:[40071],UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,PDS5A->PDS5_cohesin_associated_factor_A,chr4:39824483-39979576:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.18	0.0661	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEF2D--IQGAP3	1	24	MEF2D	1343	chr1:156470278:-	IQGAP3	29934	chr1:156524184:-	ONLY_REF_SPLICE	YES	47	19	0.35	0.57	0.0083	0.1981	LOCAL_REARRANGEMENT:-:[24577],MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,IQGAP3->IQ_motif_containing_GTPase_activating_protein_3,chr1:156495197-156542396:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.57	0.2064	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	5	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	3	1	0.77	0.91	0.0413	0.0413	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.91	0.0826	FALSE	344	821	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFA4--PHF14	6	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	1414	80	0	0.08	0.0495	0.0083	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.0578	FALSE	19	32	3	60	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OXNAD1--AC005592.2	6	1	OXNAD1	10066	chr3:16345099:+	AC005592.2	29406	chr5:141961367:+	ONLY_REF_SPLICE	YES	21	0	0.25	1	0.0495	0.0083	OXNAD1->chr3:16306706-16391806:+,oxidoreductase_NAD_binding_domain_containing_1,AC005592.2->chr5:141704858-142051566:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0578	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	5	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0413	0.033	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.0743	FALSE	20	187	4	79	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAP1B--AC068535.4	6	0	RAP1B	15072	chr12:69053773:+	AC068535.4	19991	chr2:105121504:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+,AC068535.4->chr2:105104916-105126967:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0495	TRUE	0	0	0	4	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	10	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0248	0.0826	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1074	FALSE	499	1288	110	792	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.0248	0.0826	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	0.1074	FALSE	407	2205	196	549	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEF2A--CTD-2054N24.2	4	5	MEF2A	9126	chr15:100197743:+	CTD-2054N24.2	26550	chr15:100348352:+	INCL_NON_REF_SPLICE	YES	19	0	0.32	1	0.033	0.0413	NEIGHBORS[90557],MEF2A->chr15:100017370-100256671:+,myocyte_enhancer_factor_2A,CTD-2054N24.2->chr15:100347228-100417353:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.0743	FALSE	0	0	0	1	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	5	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.033	0.0413	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.0743	FALSE	344	821	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0413	FALSE	183	104	9	328	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0413	FALSE	499	1288	110	792	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C14orf159--AC004041.2	4	3	C14orf159	4140	chr14:91580872:+	AC004041.2	39567	chr5:131977974:-	ONLY_REF_SPLICE	YES	46	0	0.13	1	0.033	0.0248	C14orf159->chr14:91526677-91691976:+,chromosome_14_open_reading_frame_159,AC004041.2->chr5:131966281-131999964:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.0578	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	7	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	60	36	0.14	0.22	0.0248	0.0578	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.22	0.0826	TRUE	267	562	48	632	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	3	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	43	929	0.14	0.01	0.033	0.0248	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.14	0.0578	FALSE	0	0	0	434	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-660H19.1--RP11-145M4.3	2	10	RP4-660H19.1	2425	chr1:73316433:-	RP11-145M4.3	9030	chr1:59552075:+	ONLY_REF_SPLICE	YES	3	2	0.8	0.86	0.0165	0.0826	RP4-660H19.1->chr1:73214604-73364823:-,RP11-145M4.3->chr1:59522315-59553867:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.86	0.0991	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-660H19.1--RP11-145M4.3	3	6	RP4-660H19.1	1374	chr1:73364450:-	RP11-145M4.3	10224	chr1:59553687:+	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.0248	0.0495	RP4-660H19.1->chr1:73214604-73364823:-,RP11-145M4.3->chr1:59522315-59553867:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2K--PDS5A	3	6	UBE2K	4583	chr4:39757359:+	PDS5A	34374	chr4:39881453:-	ONLY_REF_SPLICE	YES	127	118	0.07	0.07	0.0248	0.0495	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Hippocampus=1,Heart_-_Atrial_Appendage=1},{Klijn_CCL:Lymphoid=1},LOCAL_INVERSION:+:-:[40071],UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,PDS5A->PDS5_cohesin_associated_factor_A,chr4:39824483-39979576:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.07	0.0743	TRUE	0	0	0	1	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0.0083	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0413	FALSE	462	80	0	856	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OXNAD1--AC005592.2	4	1	OXNAD1	10066	chr3:16345099:+	AC005592.2	28270	chr5:141909560:+	ONLY_REF_SPLICE	YES	21	0	0.19	1	0.033	0.0083	OXNAD1->chr3:16306706-16391806:+,oxidoreductase_NAD_binding_domain_containing_1,AC005592.2->chr5:141704858-142051566:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP10--NDUFC1	4	0	ARHGAP10	2624	chr4:148744108:+	NDUFC1	40795	chr4:140216300:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0165	0.066	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.0825	FALSE	467	2173	244	435	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	3	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	1	2	0.86	0.75	0.0248	0.0248	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.86	0.0496	FALSE	344	821	44	306	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLEKHM2--ARHGEF11	2	7	PLEKHM2	10796	chr1:16055228:+	ARHGEF11	21837	chr1:156955965:-	ONLY_REF_SPLICE	YES	40	26	0.18	0.26	0.0165	0.0578	PLEKHM2->chr1:16010827-16061264:+,pleckstrin_homology_and_RUN_domain_containing_M2,ARHGEF11->Rho_guanine_nucleotide_exchange_factor_11,chr1:156904632-157015162:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.26	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	3	3	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	6	0	0.5	1	0.0248	0.0248	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0496	TRUE	5	12	0	42	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	11895	0	0	1	0.0248	0.0165	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0413	FALSE	182	97	9	327	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.92	1	0.0083	0.0826	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.0909	FALSE	192	492	57	212	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2374C24.1--RP11-6N13.1	3	0	CTD-2374C24.1	1068	chr5:104581998:-	RP11-6N13.1	22342	chr5:103820353:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	CTD-2374C24.1->chr5:104253193-104582065:-,RP11-6N13.1->chr5:103718999-104728671:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXK2--CACNA1A	2	4	FOXK2	10797	chr17:80544076:+	CACNA1A	64180	chr19:13347432:-	ONLY_REF_SPLICE	YES	110	1	0.05	0.86	0.0165	0.033	FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.86	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAEA--CTBP1	3	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	TRUE	3	14	2	43	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEF2A--CTD-2054N24.2	2	4	MEF2A	7933	chr15:100185969:+	CTD-2054N24.2	26550	chr15:100348352:+	ONLY_REF_SPLICE	YES	22	0	0.21	1	0.0165	0.033	NEIGHBORS[90557],MEF2A->chr15:100017370-100256671:+,myocyte_enhancer_factor_2A,CTD-2054N24.2->chr15:100347228-100417353:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.0495	FALSE	0	0	0	1	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0248	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	FALSE	183	104	9	328	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0248	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0248	FALSE	462	80	0	856	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	2	0	0.82	1	0.0083	0.066	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.0743	FALSE	515	4851	409	746	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLEKHM2--ARHGEF11	2	3	PLEKHM2	10211	chr1:16054643:+	ARHGEF11	21837	chr1:156955965:-	ONLY_REF_SPLICE	YES	65	26	0.07	0.16	0.0165	0.0248	PLEKHM2->chr1:16010827-16061264:+,pleckstrin_homology_and_RUN_domain_containing_M2,ARHGEF11->Rho_guanine_nucleotide_exchange_factor_11,chr1:156904632-157015162:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.16	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTOR--EPGN	2	2	MTOR	26596	chr1:11259598:-	EPGN	60764	chr4:75177902:+	ONLY_REF_SPLICE	NO	25	0	0.14	1	0.0165	0.0165	MTOR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:11166592-11322564:-,mechanistic_target_of_rapamycin,EPGN->chr4:75174190-75181024:+,epithelial_mitogen	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-660H19.1--RP11-145M4.3	1	6	RP4-660H19.1	1374	chr1:73364450:-	RP11-145M4.3	9030	chr1:59552075:+	ONLY_REF_SPLICE	YES	3	2	0.7	0.78	0.0083	0.0495	RP4-660H19.1->chr1:73214604-73364823:-,RP11-145M4.3->chr1:59522315-59553867:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.78	0.0578	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	2	2	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0165	0.0165	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.033	TRUE	37	101	7	40	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL163953.3--SIPA1L1	2	1	AL163953.3	7654	chr14:53836219:+	SIPA1L1	17459	chr14:71880665:+	ONLY_REF_SPLICE	YES	1	5	0.75	0.38	0.0165	0.0083	AL163953.3->chr14:53635772-54153976:+,SIPA1L1->chr14:71787166-72207946:+,signal_induced_proliferation_associated_1_like_1	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.75	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP32--PTRH2	1	5	USP32	4918	chr17:58422842:-	PTRH2	48500	chr17:57777550:-	ONLY_REF_SPLICE	YES	11	9	0.35	0.4	0.0083	0.0413	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.4	0.0496	TRUE	0	0	0	2	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCSD1--DCAF6	2	0	RCSD1	1337	chr1:167599666:+	DCAF6	22963	chr1:167921038:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0165	0	RCSD1->RCSD_domain_containing_1,chr1:167599330-167675486:+,DCAF6->DDB1_and_CUL4_associated_factor_6,chr1:167905021-168045081:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0165	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--FGF1	2	0	RFTN1	12839	chr3:16419225:-	FGF1	33327	chr5:141980370:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0165	0	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,FGF1->Oncogene{Bushman},chr5:141971743-142077617:-,fibroblast_growth_factor_1	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0165	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-435B5.4--RPS14	2	0	RP11-435B5.4	2843	chr1:143465380:-	RPS14	22391	chr5:149826526:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0165	0	RP11-435B5.4->chr1:143354963-143467632:-,RPS14->chr5:149822753-149829319:-,ribosomal_protein_S14	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0165	TRUE	0	0	0	1	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0165	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0165	TRUE	5	8	0	33	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--CTBP1	2	0	YWHAE	1332	chr17:1303341:-	CTBP1	16917	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0165	0	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0165	TRUE	0	1	0	2	0	TRUE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	1	3	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	NO	6	0	0.4	1	0.0083	0.0248	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.0331	TRUE	1	1	0	17	1	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CFD--KANSL2	1	1	CFD	3504	chr19:861956:+	KANSL2	19349	chr12:49048843:-	ONLY_REF_SPLICE	YES	17	63	0.11	0.03	0.0083	0.0083	CFD->chr19:859453-863453:+,complement_factor_D_(adipsin),KANSL2->KAT8_regulatory_NSL_complex_subunit_2,chr12:49047184-49076021:-	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.11	0.0166	TRUE	0	0	0	1	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXL8--EIF4A2	1	1	FBXL8	2944	chr16:67195840:+	EIF4A2	12500	chr3:186504916:+	ONLY_REF_SPLICE	YES	28	433	0.07	0	0.0083	0.0083	FBXL8->F-box_and_leucine-rich_repeat_protein_8,chr16:67193834-67198473:+,EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GDAP1--RP11-758M4.1	1	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	35	8	0.05	0.2	0.0083	0.0083	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.2	0.0166	TRUE	7	28	0	43	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	1	1	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0083	0.0083	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	FALSE	0	26	0	50	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	1	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0083	0.0083	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	FALSE	0	24	0	62	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEF2A--CTD-2054N24.2	1	1	MEF2A	7933	chr15:100185969:+	CTD-2054N24.2	28820	chr15:100378916:+	ONLY_REF_SPLICE	YES	22	3	0.08	0.4	0.0083	0.0083	NEIGHBORS[90557],MEF2A->chr15:100017370-100256671:+,myocyte_enhancer_factor_2A,CTD-2054N24.2->chr15:100347228-100417353:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.4	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000923
BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEF2A--CTD-2054N24.2	1	1	MEF2A	7933	chr15:100185969:+	CTD-2054N24.2	30175	chr15:100417158:+	ONLY_REF_SPLICE	YES	22	0	0.08	1	0.0083	0.0083	NEIGHBORS[90557],MEF2A->chr15:100017370-100256671:+,myocyte_enhancer_factor_2A,CTD-2054N24.2->chr15:100347228-100417353:+	BCP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000923
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	104	54	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1572	0.6008	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.758	TRUE	508	994	45	981	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	62	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	277	8	0.19	0.89	0.6898	0.0334	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.89	0.7232	TRUE	519	3926	326	965	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	56	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6231	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6231	TRUE	0	0	0	518	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	45	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5007	0.0668	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5675	FALSE	462	80	0	856	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	99	MT-ND4	1984	chrM:11743:+	MT-ND4L	5475	chrM:10566:+	INCL_NON_REF_SPLICE	YES	13174	0	0.01	1	0.0334	1.1015	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	1.1349	FALSE	344	827	44	306	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	91	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	35	0	0.73	1	0.0334	1.0125	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	1.0459	FALSE	344	827	44	306	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	19	21	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	125	62	0.24	0.39	0.2114	0.2337	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.39	0.4451	TRUE	267	562	48	632	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	9	59	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	0	0.93	1	0.1001	0.6565	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.7566	FALSE	344	821	44	306	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	16	18	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	120	62	0.22	0.35	0.178	0.2003	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.35	0.3783	TRUE	267	562	48	632	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KHDRBS1--HLA-C	20	0	KHDRBS1	4802	chr1:32498799:+	HLA-C	19309	chr6:31237305:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2225	0	KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+,HLA-C->chr6:31236526-31239907:-,major_histocompatibility_complex,_class_I,_C	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2225	FALSE	0	0	0	6	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	15	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1669	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1669	FALSE	13	9	0	364	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	12	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1335	0.0779	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2114	FALSE	462	80	0	856	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1446	0.0223	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1669	FALSE	499	1288	110	792	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIAM1--KCTD10	10	12	TIAM1	3104	chr21:32836296:-	KCTD10	43593	chr12:109907533:-	ONLY_REF_SPLICE	YES	13	1	0.63	0.96	0.1113	0.1335	TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-,KCTD10->chr12:109886461-109915349:-,potassium_channel_tetramerization_domain_containing_10	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.96	0.2448	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGB7--IGL@	10	11	ITGB7	5105	chr12:53591323:-	IGL@	59655	chr22:23101239:+	INCL_NON_REF_SPLICE	YES	8617	4329	0	0	0.1113	0.1224	ITGB7->chr12:53585102-53601091:-,integrin_subunit_beta_7,IGL@->Oncogene{Bushman}	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.2337	TRUE	0	0	0	1	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGB7--MT-CO3	9	13	ITGB7	10149	chr12:53586279:-	MT-CO3	14678	chrM:9558:+	INCL_NON_REF_SPLICE	YES	12263	13295	0	0	0.1001	0.1446	ITGB7->chr12:53585102-53601091:-,integrin_subunit_beta_7,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.2447	FALSE	0	0	0	1	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	12	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1335	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1335	FALSE	189	492	56	216	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1335	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1335	TRUE	0	0	0	434	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	27	MT-ND4	2343	chrM:12102:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0556	0.3004	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.356	FALSE	209	205	15	279	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1224	0.0223	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1447	FALSE	499	1288	110	792	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE6B--PPP2R2D	11	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1224	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1224	TRUE	7	65	3	22	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	27	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0445	0.3004	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.3449	FALSE	209	205	15	279	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	9	5	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	67	0	0.17	1	0.1001	0.0556	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.1557	FALSE	344	827	44	306	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	10	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1113	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1113	FALSE	13	9	0	364	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	20	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	13157	0	0	1	0.0445	0.2225	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.267	FALSE	231	217	16	283	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0779	0.0779	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1558	FALSE	499	1288	110	792	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ND4L	7	5	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	781	0	0.02	1	0.0779	0.0556	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.1335	FALSE	1	1	0	107	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	16	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12721	37	0	0.35	0.0445	0.178	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.35	0.2225	FALSE	231	217	16	283	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	10953	4	0	0.71	0.0779	0.0334	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.71	0.1113	FALSE	230	193	14	283	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	11	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0556	0.1224	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.178	FALSE	499	1288	110	792	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	10	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	14893	0	0	1	0.0556	0.1113	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1669	FALSE	231	217	16	283	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	7	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	7981	20979	0	0	0.0779	0.0111	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.089	FALSE	183	104	9	328	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	17	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13484	0	0	1	0.0334	0.1891	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2225	FALSE	231	217	16	283	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIAM1--KCTD10	4	13	TIAM1	3171	chr21:32836229:-	KCTD10	43593	chr12:109907533:-	INCL_NON_REF_SPLICE	YES	9	1	0.65	0.94	0.0445	0.1446	TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-,KCTD10->chr12:109886461-109915349:-,potassium_channel_tetramerization_domain_containing_10	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.94	0.1891	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGB7--MT-CO3	4	12	ITGB7	10140	chr12:53586288:-	MT-CO3	14669	chrM:9549:+	INCL_NON_REF_SPLICE	YES	12460	13413	0	0	0.0445	0.1335	ITGB7->chr12:53585102-53601091:-,integrin_subunit_beta_7,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.178	FALSE	0	0	0	1	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	4	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12367	5	0	0.67	0.0668	0.0445	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.67	0.1113	FALSE	231	205	14	283	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	6	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0668	0.0445	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1113	FALSE	515	4851	409	746	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--ITGB7	4	11	IGL@	65881	chr22:23248774:+	ITGB7	79661	chr12:53590506:-	INCL_NON_REF_SPLICE	YES	99	9121	0.13	0	0.0445	0.1224	IGL@->Oncogene{Bushman},ITGB7->chr12:53585102-53601091:-,integrin_subunit_beta_7	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.13	0.1669	TRUE	0	0	0	1	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	4	0	0.73	1	0.0556	0.0668	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	0.1224	FALSE	189	492	56	216	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	14	MT-ND4	1515	chrM:11274:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	15676	0	0	1	0.0334	0.1558	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1892	FALSE	231	217	16	283	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNTN4--SSUH2	6	0	CNTN4	12473	chr3:2787381:+	SSUH2	61145	chr3:8677543:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0668	0	CNTN4->Oncogene{Bushman},chr3:2140497-3099645:+,contactin_4,SSUH2->chr3:8661086-8786726:-,ssu-2_homolog_(C._elegans)	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--ITGB7	4	8	IGL@	60608	chr22:23237817:+	ITGB7	79661	chr12:53590506:-	INCL_NON_REF_SPLICE	YES	10653	9121	0	0	0.0445	0.089	IGL@->Oncogene{Bushman},ITGB7->chr12:53585102-53601091:-,integrin_subunit_beta_7	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1335	TRUE	0	0	0	1	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MNS1--TEX9	6	0	MNS1	10647	chr15:56720962:-	TEX9	31887	chr15:56720843:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0668	0	NEIGHBORS_OVERLAP:-:+:[24453],MNS1->chr15:56713742-56757335:-,meiosis_specific_nuclear_structural_1,TEX9->chr15:56536207-56738195:+,testis_expressed_9	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0668	FALSE	0	0	0	3	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	12	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13406	37	0	0.29	0.0334	0.1335	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.29	0.1669	FALSE	231	217	16	283	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0668	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0668	FALSE	462	80	0	856	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--ITGB7	3	11	IGL@	71564	chr22:23265028:+	ITGB7	79661	chr12:53590506:-	INCL_NON_REF_SPLICE	YES	15	9121	0.48	0	0.0334	0.1224	IGL@->Oncogene{Bushman},ITGB7->chr12:53585102-53601091:-,integrin_subunit_beta_7	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.48	0.1558	TRUE	0	0	0	1	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	11	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	14265	0	0	1	0.0334	0.1224	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1558	FALSE	231	217	16	283	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7824	21783	0	0	0.0556	0.0223	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0779	FALSE	183	104	9	328	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	10	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	32	0	0.29	1	0.0334	0.1113	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.1447	FALSE	344	826	44	306	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	10	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0334	0.1113	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1447	FALSE	499	1288	110	792	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGB7--MT-CO3	3	9	ITGB7	6951	chr12:53589477:-	MT-CO3	14386	chrM:9266:+	INCL_NON_REF_SPLICE	YES	11166	0	0	1	0.0334	0.1001	ITGB7->chr12:53585102-53601091:-,integrin_subunit_beta_7,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1335	FALSE	0	0	0	1	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	5	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0556	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0556	FALSE	16	356	14	466	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0445	0.0445	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.089	FALSE	467	2173	244	435	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIAM1--KCTD10	3	8	TIAM1	2051	chr21:32931240:-	KCTD10	43593	chr12:109907533:-	ONLY_REF_SPLICE	YES	10	1	0.52	0.92	0.0334	0.089	TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-,KCTD10->chr12:109886461-109915349:-,potassium_channel_tetramerization_domain_containing_10	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.92	0.1224	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10852	5	0	0.58	0.0445	0.0334	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.58	0.0779	FALSE	230	198	14	283	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	6	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0.0668	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1002	FALSE	462	80	0	856	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--ITGB7	3	5	IGL@	60538	chr22:23237747:+	ITGB7	78525	chr12:53591642:-	INCL_NON_REF_SPLICE	NO	13860	3459	0	0	0.0334	0.0556	IGL@->Oncogene{Bushman},ITGB7->chr12:53585102-53601091:-,integrin_subunit_beta_7	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.089	FALSE	0	0	0	1	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	1	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	9	0	0.36	1	0.0445	0.0111	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.0556	FALSE	189	492	56	216	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	5	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0.0556	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.089	FALSE	499	1288	110	792	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITM2C--MT-CO1	3	4	ITM2C	5714	chr2:231741622:+	MT-CO1	11698	chrM:6546:+	INCL_NON_REF_SPLICE	YES	2554	21474	0	0	0.0334	0.0445	ITM2C->chr2:231729354-231743963:+,integral_membrane_protein_2C,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0779	FALSE	0	0	0	6	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	4	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	9174	19840	0	0	0.0334	0.0445	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0779	FALSE	183	104	9	328	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	10852	37	0	0.14	0.0334	0.0334	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.14	0.0668	FALSE	230	198	14	283	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTA1--OR7G2	3	3	VTA1	7670	chr6:142525202:+	OR7G2	17910	chr19:9213935:-	INCL_NON_REF_SPLICE	YES	84	0	0.07	1	0.0334	0.0334	VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1,OR7G2->chr19:9212945-9213982:-,olfactory_receptor_family_7_subfamily_G_member_2	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGB7--MT-ND4	3	2	ITGB7	6583	chr12:53589845:-	MT-ND4	15339	chrM:11772:+	INCL_NON_REF_SPLICE	YES	10097	12644	0	0	0.0334	0.0223	ITGB7->chr12:53585102-53601091:-,integrin_subunit_beta_7,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0557	FALSE	0	0	0	1	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	7581	19668	0	0	0.0334	0.0223	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0557	FALSE	183	104	9	328	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABCF2--MT-ND4L	3	1	ABCF2	11462	chr7:150911009:-	MT-ND4L	17168	chrM:10471:+	INCL_NON_REF_SPLICE	YES	260	0	0.02	1	0.0334	0.0111	ABCF2->ATP_binding_cassette_subfamily_F_member_2,chr7:150904923-150924316:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0445	FALSE	0	0	0	2	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0334	FALSE	189	492	56	216	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0334	FALSE	189	492	56	216	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0334	FALSE	189	492	56	216	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--SNTB1	2	2	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	60	2	0.06	0.67	0.0223	0.0223	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.67	0.0446	TRUE	0	0	0	25	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	2	2	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	YES	29	35	0.12	0.1	0.0223	0.0223	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.12	0.0446	TRUE	4	3	0	21	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0.0111	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0334	FALSE	416	2512	207	587	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B3GALNT2--MAP2K5	2	0	B3GALNT2	3612	chr1:235657991:-	MAP2K5	52898	chr15:68098984:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	B3GALNT2->beta-1,3-N-acetylgalactosaminyltransferase_2,chr1:235613238-235667781:-,MAP2K5->Oncogene{Bushman},chr15:67835047-68099461:+,mitogen-activated_protein_kinase_kinase_5	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ1A--CFL1	2	0	BAZ1A	2156	chr14:35343698:-	CFL1	41609	chr11:65623713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,CFL1->chr11:65590493-65629497:-,cofilin_1	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GCNT2--WDR43	2	0	GCNT2	6569	chr6:10529074:+	WDR43	38311	chr2:29159788:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GCNT2->chr6:10492456-10629601:+,glucosaminyl_(N-acetyl)_transferase_2,_I-branching_enzyme_(I_blood_group),WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1191--CANX	2	0	KIAA1191	1367	chr5:175788605:-	CANX	20784	chr5:179132680:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	KIAA1191->KIAA1191,chr5:175773064-175788971:-,CANX->calnexin,chr5:179105629-179157926:+	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTBP1--GFI1	2	0	PTBP1	1431	chr19:797505:+	GFI1	18316	chr1:92949143:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1,GFI1->Oncogene{Bushman},chr1:92940319-92952433:-,growth_factor_independent_1_transcription_repressor	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0111	0.0445	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0556	FALSE	192	492	57	212	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0111	0.0445	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0556	FALSE	407	2205	196	549	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--RBM39	2	0	SF1	3289	chr11:64543970:-	RBM39	32367	chr20:34301018:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	SF1->chr11:64532078-64546258:-,splicing_factor_1,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBR5--AZIN1	2	0	UBR5	1669	chr8:103424401:-	AZIN1	63524	chr8:103870378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx&tcga_normals:1/3694=0.03%,UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	4	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP47--FBXO3	2	0	USP47	7470	chr11:11913653:+	FBXO3	59623	chr11:33763630:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,FBXO3->F-box_protein_3,chr11:33762485-33796089:-	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VEPH1--OSER1	2	0	VEPH1	6165	chr3:157213001:-	OSER1	33731	chr20:42835638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	VEPH1->Oncogene{Bushman},chr3:156977531-157251408:-,ventricular_zone_expressed_PH_domain_containing_1,OSER1->chr20:42825136-42839431:-,oxidative_stress_responsive_serine_rich_1	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIAM1--KCTD10	1	3	TIAM1	3104	chr21:32836296:-	KCTD10	46374	chr12:109898610:-	ONLY_REF_SPLICE	YES	13	123	0.24	0.03	0.0111	0.0334	TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-,KCTD10->chr12:109886461-109915349:-,potassium_channel_tetramerization_domain_containing_10	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.24	0.0445	TRUE	0	0	0	1	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPU--ZBTB18	1	1	HNRNPU	1926	chr1:245026919:-	ZBTB18	18540	chr1:244217090:+	ONLY_REF_SPLICE	YES	772	0	0	1	0.0111	0.0111	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=2},HNRNPU->chr1:245014468-245027844:-,heterogeneous_nuclear_ribonucleoprotein_U_(scaffold_attachment_factor_A),ZBTB18->chr1:244214585-244220778:+,zinc_finger_and_BTB_domain_containing_18	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0222	FALSE	1	1	0	1	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--CNN2	1	1	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	NO	137	540	0.01	0	0.0111	0.0111	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0222	FALSE	35	34	3	30	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-166B2.1--TNFRSF17	1	1	RP11-166B2.1	2212	chr16:12057748:-	TNFRSF17	15287	chr16:12060052:+	ONLY_REF_SPLICE	YES	45	1379	0.04	0	0.0111	0.0111	NEIGHBORS_OVERLAP:-:+:[2961],RP11-166B2.1->chr16:12021230-12070500:-,TNFRSF17->Oncogene{Bushman},chr16:12058964-12061925:+,tumor_necrosis_factor_receptor_superfamily_member_17	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0222	FALSE	0	0	0	3	0	FALSE	ACH-000763
MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	1	1	SPON2	4412	chr4:1195057:-	CTBP1	23049	chr4:1232125:-	ONLY_REF_SPLICE	YES	29	393	0.06	0.01	0.0111	0.0111	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.0222	FALSE	2	0	0	8	0	FALSE	ACH-000763
ES2_OVARY	TIMM23B--LINC00843	93	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8877	0.2291	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ES2_OVARY	1	1	1.1168	TRUE	508	994	45	981	0	FALSE	ACH-000906
ES2_OVARY	HSP90AB1--MT-RNR2	71	5	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4156	0	0.02	1	0.6777	0.0477	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ES2_OVARY	0.02	1	0.7254	FALSE	13	9	0	364	0	FALSE	ACH-000906
ES2_OVARY	TIMM23--RP11-464F9.1	63	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	223	3	0.23	0.96	0.6013	0.0191	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ES2_OVARY	0.23	0.96	0.6204	TRUE	519	3926	326	965	0	FALSE	ACH-000906
ES2_OVARY	ACER3--CHKA	40	24	ACER3	1213	chr11:76572123:+	CHKA	33043	chr11:67838324:-	ONLY_REF_SPLICE	YES	23	12	0.74	0.84	0.3818	0.2291	ACER3->alkaline_ceramidase_3,chr11:76571911-76737841:+,CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-	ES2_OVARY	0.74	0.84	0.6109	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	GDPD5--ARHGAP42	35	14	GDPD5	1694	chr11:75236255:-	ARHGAP42	38227	chr11:100641074:+	ONLY_REF_SPLICE	YES	3	5	0.94	0.91	0.3341	0.1336	GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5,ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+	ES2_OVARY	0.91	0.94	0.4677	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	MT-TA--MT-TC	37	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3532	0.0477	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ES2_OVARY	1	1	0.4009	FALSE	462	80	0	856	0	FALSE	ACH-000906
ES2_OVARY	YAP1--MAML2	29	14	YAP1	8159	chr11:102076805:+	MAML2	22480	chr11:95826681:-	ONLY_REF_SPLICE	YES	337	2	0.11	0.96	0.2768	0.1336	{Klijn_CCL:Ovary=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	ES2_OVARY	0.11	0.96	0.4104	TRUE	0	1	0	2	1	TRUE	ACH-000906
ES2_OVARY	FAM76B--JRKL	25	8	FAM76B	5291	chr11:95519283:-	JRKL	22168	chr11:96240201:+	ONLY_REF_SPLICE	YES	15	0	0.69	1	0.2386	0.0764	FAM76B->chr11:95502106-95523573:-,family_with_sequence_similarity_76_member_B,JRKL->JRK-like,chr11:96123153-96240738:+	ES2_OVARY	0.69	1	0.315	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	RP11-680G10.1--GSE1	26	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	3	1	0.91	0.2482	0.0382	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ES2_OVARY	0.91	1	0.2864	TRUE	465	1949	224	605	0	FALSE	ACH-000906
ES2_OVARY	RP11-680G10.1--GSE1	24	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2291	0.0477	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ES2_OVARY	1	1	0.2768	TRUE	458	1351	185	561	0	FALSE	ACH-000906
ES2_OVARY	PPP1R12A--RP1-78O14.1	19	6	PPP1R12A	1766	chr12:80328475:-	RP1-78O14.1	41348	chr12:79787705:-	ONLY_REF_SPLICE	YES	51	0	0.33	1	0.1814	0.0573	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,RP1-78O14.1->chr12:79734985-79897176:-	ES2_OVARY	0.33	1	0.2387	TRUE	0	0	0	2	0	TRUE	ACH-000906
ES2_OVARY	HSP90AB1--MT-RNR2	19	5	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4227	0	0.01	1	0.1814	0.0477	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ES2_OVARY	0.01	1	0.2291	FALSE	13	9	0	364	0	FALSE	ACH-000906
ES2_OVARY	NPM1P24--SET	19	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1814	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ES2_OVARY	1	1	0.1814	TRUE	0	0	0	434	0	FALSE	ACH-000906
ES2_OVARY	ZNF738--SMOC2	16	4	ZNF738	1214	chr19:21541945:+	SMOC2	14678	chr6:168910595:+	ONLY_REF_SPLICE	YES	15	0	0.57	1	0.1527	0.0382	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,SMOC2->SPARC_related_modular_calcium_binding_2,chr6:168841831-169073984:+	ES2_OVARY	0.57	1	0.1909	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	MT-ND4--MT-ATP8	16	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1527	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ES2_OVARY	1	1	0.1527	FALSE	230	198	14	283	0	FALSE	ACH-000906
ES2_OVARY	MT-TA--MT-TC	15	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1432	0.0382	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ES2_OVARY	1	1	0.1814	FALSE	462	80	0	856	0	FALSE	ACH-000906
ES2_OVARY	MT-ND6--MT-TE	15	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1432	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ES2_OVARY	1	1	0.1432	FALSE	499	1288	110	792	0	FALSE	ACH-000906
ES2_OVARY	YAP1--MAML2	10	19	YAP1	9219	chr11:102080295:+	MAML2	22480	chr11:95826681:-	ONLY_REF_SPLICE	YES	401	2	0.07	0.94	0.0954	0.1814	{Klijn_CCL:Ovary=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	ES2_OVARY	0.07	0.94	0.2768	TRUE	0	1	0	2	1	TRUE	ACH-000906
ES2_OVARY	RP11-96H19.1--RP11-446N19.1	12	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.82	1	0.1145	0.0191	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ES2_OVARY	0.82	1	0.1336	FALSE	515	4851	409	746	0	FALSE	ACH-000906
ES2_OVARY	C15orf57--CBX3	9	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	26	31	0.32	0.28	0.0859	0.0286	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	ES2_OVARY	0.28	0.32	0.1145	TRUE	267	562	48	632	0	FALSE	ACH-000906
ES2_OVARY	YAP1--MAML2	5	19	YAP1	8171	chr11:102076817:+	MAML2	22480	chr11:95826681:-	ONLY_REF_SPLICE	YES	406	2	0.06	0.92	0.0477	0.1814	{Klijn_CCL:Ovary=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	ES2_OVARY	0.06	0.92	0.2291	TRUE	0	1	0	2	1	TRUE	ACH-000906
ES2_OVARY	MT-ND6--MT-TE	9	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0859	0.0095	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ES2_OVARY	1	1	0.0954	FALSE	499	1288	110	792	0	FALSE	ACH-000906
ES2_OVARY	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0859	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ES2_OVARY	1	1	0.0859	FALSE	462	80	0	856	0	FALSE	ACH-000906
ES2_OVARY	C15orf57--CBX3	8	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	25	32	0.29	0.24	0.0764	0.0191	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	ES2_OVARY	0.24	0.29	0.0955	TRUE	267	562	48	632	0	FALSE	ACH-000906
ES2_OVARY	CTD-2337A12.1--CAST	8	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0764	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	ES2_OVARY	1	1	0.0764	TRUE	347	1186	183	220	0	FALSE	ACH-000906
ES2_OVARY	MT-ND4--MT-ATP8	8	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0764	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ES2_OVARY	1	1	0.0764	FALSE	230	193	14	283	0	FALSE	ACH-000906
ES2_OVARY	MT-ND6--MT-TE	6	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0573	0.0573	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ES2_OVARY	1	1	0.1146	FALSE	499	1288	110	792	0	FALSE	ACH-000906
ES2_OVARY	ACER3--CHKA	2	21	ACER3	1196	chr11:76572106:+	CHKA	33043	chr11:67838324:-	ONLY_REF_SPLICE	YES	21	12	0.52	0.66	0.0191	0.2004	ACER3->alkaline_ceramidase_3,chr11:76571911-76737841:+,CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-	ES2_OVARY	0.52	0.66	0.2195	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	ARHGAP42--ANKRD13D	7	1	ARHGAP42	1180	chr11:100558563:+	ANKRD13D	43996	chr11:67067001:+	ONLY_REF_SPLICE	YES	4	27	0.67	0.23	0.0668	0.0095	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,ANKRD13D->ankyrin_repeat_domain_13_family_member_D,chr11:67056018-67069956:+	ES2_OVARY	0.23	0.67	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	NELFA--CNTN5	6	4	NELFA	5759	chr4:2010477:-	CNTN5	35161	chr11:99931944:+	ONLY_REF_SPLICE	YES	285	0	0.03	1	0.0573	0.0382	NELFA->chr4:1984441-2043630:-,negative_elongation_factor_complex_member_A,CNTN5->chr11:98891683-100229616:+,contactin_5	ES2_OVARY	0.03	1	0.0955	TRUE	0	0	0	1	0	FALSE	ACH-000906
ES2_OVARY	MT-ND4--MT-ATP8	6	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	12352	5	0	0.62	0.0573	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ES2_OVARY	0	0.62	0.0764	FALSE	231	205	14	283	0	FALSE	ACH-000906
ES2_OVARY	MT-ND6--MT-TE	4	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.82	1	0.0382	0.0954	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ES2_OVARY	0.82	1	0.1336	FALSE	499	1288	110	792	0	FALSE	ACH-000906
ES2_OVARY	SERPINE1--MT-ND4	6	2	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	2162	12230	0	0	0.0573	0.0191	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	ES2_OVARY	0	0	0.0764	FALSE	1	0	0	29	0	FALSE	ACH-000906
ES2_OVARY	CNTN5--POLN	6	1	CNTN5	17790	chr11:99945026:+	POLN	56535	chr4:2133017:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0573	0.0095	CNTN5->chr11:98891683-100229616:+,contactin_5,POLN->chr4:2073645-2243848:-,polymerase_(DNA)_nu	ES2_OVARY	1	1	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	MT-ND4--MT-ATP8	6	1	MT-ND4	1998	chrM:11757:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11274	27	0	0.21	0.0573	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ES2_OVARY	0	0.21	0.0668	FALSE	231	217	16	283	0	FALSE	ACH-000906
ES2_OVARY	NRIP1--AF127936.7	5	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	1	0.48	0.91	0.0477	0.0477	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ES2_OVARY	0.48	0.91	0.0954	FALSE	125	705	46	456	0	FALSE	ACH-000906
ES2_OVARY	RP11-662B19.2--WDR37	6	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0573	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	ES2_OVARY	1	1	0.0573	TRUE	31	42	1	25	0	FALSE	ACH-000906
ES2_OVARY	SLC1A5--MT-ND4L	6	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0573	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ES2_OVARY	1	1	0.0573	FALSE	0	0	0	189	0	FALSE	ACH-000906
ES2_OVARY	ANPEP--MT-ND4L	5	3	ANPEP	16060	chr15:90328379:-	MT-ND4L	19321	chrM:10471:+	INCL_NON_REF_SPLICE	YES	318	0	0.02	1	0.0477	0.0286	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ES2_OVARY	0.02	1	0.0763	FALSE	0	1	0	16	0	FALSE	ACH-000906
ES2_OVARY	NRIP1--AF127936.7	5	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	1	0.88	0.88	0.0477	0.0191	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ES2_OVARY	0.88	0.88	0.0668	FALSE	292	1546	117	613	0	FALSE	ACH-000906
ES2_OVARY	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0477	0.0191	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ES2_OVARY	1	1	0.0668	FALSE	467	2173	244	435	0	FALSE	ACH-000906
ES2_OVARY	FOSL1--MT-ATP6	5	1	FOSL1	4819	chr11:65660305:-	MT-ATP6	9160	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1527	4147	0	0	0.0477	0.0095	FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ES2_OVARY	0	0	0.0572	FALSE	0	0	0	2	0	FALSE	ACH-000906
ES2_OVARY	MT-TA--MT-TC	4	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0.0477	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ES2_OVARY	1	1	0.0859	FALSE	462	80	0	856	0	FALSE	ACH-000906
ES2_OVARY	MT-ND4--MT-ATP8	4	4	MT-ND4	1998	chrM:11757:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	NO	11274	3	0	0.73	0.0382	0.0382	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ES2_OVARY	0	0.73	0.0764	FALSE	231	217	16	283	0	FALSE	ACH-000906
ES2_OVARY	SCARB1--UBC	5	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0477	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	ES2_OVARY	1	1	0.0477	TRUE	55	66	6	101	0	FALSE	ACH-000906
ES2_OVARY	EEF2--MT2A	4	3	EEF2	9846	chr19:3976466:-	MT2A	13683	chr16:56642535:+	INCL_NON_REF_SPLICE	YES	2391	6	0	0.54	0.0382	0.0286	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	ES2_OVARY	0	0.54	0.0668	FALSE	1	0	0	19	0	FALSE	ACH-000906
ES2_OVARY	MT-ND4--MT-ATP8	4	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11879	0	0	1	0.0382	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ES2_OVARY	0	1	0.0573	FALSE	231	217	16	283	0	FALSE	ACH-000906
ES2_OVARY	EEF2--MT2A	3	4	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	2667	6	0	0.54	0.0286	0.0382	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	ES2_OVARY	0	0.54	0.0668	FALSE	1	0	0	19	0	FALSE	ACH-000906
ES2_OVARY	MT-TA--MT-TC	3	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0.0382	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ES2_OVARY	1	1	0.0668	FALSE	462	80	0	856	0	FALSE	ACH-000906
ES2_OVARY	RP11-444D3.1--SOX5	3	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0.0286	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	ES2_OVARY	1	1	0.0572	TRUE	477	1352	189	275	0	FALSE	ACH-000906
ES2_OVARY	HSP90AB1--MT-RNR2	3	2	HSP90AB1	4415	chr6:44218238:+	MT-RNR2	11368	chrM:2241:+	INCL_NON_REF_SPLICE	YES	3338	9202	0	0	0.0286	0.0191	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ES2_OVARY	0	0	0.0477	FALSE	0	0	0	11	0	FALSE	ACH-000906
ES2_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	12583	0	0	1	0.0286	0.0191	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ES2_OVARY	0	1	0.0477	FALSE	231	217	16	283	0	FALSE	ACH-000906
ES2_OVARY	NRIP1--AF127936.7	2	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	1	0.32	0.89	0.0191	0.0573	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ES2_OVARY	0.32	0.89	0.0764	FALSE	164	806	69	479	0	FALSE	ACH-000906
ES2_OVARY	RABGAP1L--MACROD2	3	2	RABGAP1L	14961	chr1:174274265:+	MACROD2	66316	chr20:14830550:+	ONLY_REF_SPLICE	YES	13	0	0.28	1	0.0286	0.0191	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,MACROD2->MACRO_domain_containing_2,chr20:13976015-16033842:+	ES2_OVARY	0.28	1	0.0477	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	FOSL1--MT-ATP6	3	1	FOSL1	4814	chr11:65660310:-	MT-ATP6	9153	chrM:9075:+	INCL_NON_REF_SPLICE	YES	1480	4461	0	0	0.0286	0.0095	FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ES2_OVARY	0	0	0.0381	FALSE	0	0	0	2	0	FALSE	ACH-000906
ES2_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	11051	1354	0	0	0.0286	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ES2_OVARY	0	0	0.0381	FALSE	231	217	16	283	0	FALSE	ACH-000906
ES2_OVARY	SLC1A5--MT-ND4L	3	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	276	0	0.01	1	0.0286	0.0095	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ES2_OVARY	0.01	1	0.0381	FALSE	0	0	0	189	0	FALSE	ACH-000906
ES2_OVARY	VIM-AS1--FTL	3	1	VIM-AS1	1589	chr10:17271396:-	FTL	9803	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	2023	0	0	1	0.0286	0.0095	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	ES2_OVARY	0	1	0.0381	FALSE	0	0	0	5	0	FALSE	ACH-000906
ES2_OVARY	FOSL1--MT-ATP6	3	0	FOSL1	4658	chr11:65660466:-	MT-ATP6	8736	chrM:8658:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0	FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ES2_OVARY	1	1	0.0286	FALSE	0	0	0	2	0	FALSE	ACH-000906
ES2_OVARY	KIAA0556--XPO6	3	0	KIAA0556	5858	chr16:27642483:+	XPO6	57207	chr16:28157524:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	KIAA0556->KIAA0556,chr16:27561454-27791690:+,XPO6->chr16:28109300-28223241:-,exportin_6	ES2_OVARY	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ES2_OVARY	1	1	0.0286	FALSE	499	1288	110	792	0	FALSE	ACH-000906
ES2_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ES2_OVARY	1	1	0.0286	FALSE	499	1288	110	792	0	FALSE	ACH-000906
ES2_OVARY	PPP1R12A--RP1-78O14.1	3	0	PPP1R12A	1766	chr12:80328475:-	RP1-78O14.1	43357	chr12:79735189:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,RP1-78O14.1->chr12:79734985-79897176:-	ES2_OVARY	1	1	0.0286	TRUE	0	0	0	2	0	TRUE	ACH-000906
ES2_OVARY	SHANK2--SHANK2-AS2	3	0	SHANK2	36719	chr11:70505933:-	SHANK2-AS2	63717	chr11:70493446:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	NEIGHBORS_OVERLAP:-:+:[1397],SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,SHANK2-AS2->SHANK2_antisense_RNA_2,chr11:70492270-70493667:+	ES2_OVARY	1	1	0.0286	FALSE	0	0	0	1	0	FALSE	ACH-000906
ES2_OVARY	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0.0286	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ES2_OVARY	1	1	0.0477	FALSE	192	492	57	212	0	FALSE	ACH-000906
ES2_OVARY	RABGAP1L--MACROD2	2	2	RABGAP1L	14961	chr1:174274265:+	MACROD2	67919	chr20:14868789:+	ONLY_REF_SPLICE	YES	13	0	0.24	1	0.0191	0.0191	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,MACROD2->MACRO_domain_containing_2,chr20:13976015-16033842:+	ES2_OVARY	0.24	1	0.0382	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	RP11-155G15.2--RP11-1E3.1	2	2	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0.0191	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	ES2_OVARY	1	1	0.0382	FALSE	46	201	11	112	0	FALSE	ACH-000906
ES2_OVARY	ARHGAP42--ANKRD13D	2	1	ARHGAP42	1180	chr11:100558563:+	ANKRD13D	43524	chr11:67066529:+	ONLY_REF_SPLICE	YES	4	28	0.43	0.1	0.0191	0.0095	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,ANKRD13D->ankyrin_repeat_domain_13_family_member_D,chr11:67056018-67069956:+	ES2_OVARY	0.1	0.43	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	FAM76B--RP11-49K4.2	2	0	FAM76B	5291	chr11:95519283:-	RP11-49K4.2	17537	chr11:96244092:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	FAM76B->chr11:95502106-95523573:-,family_with_sequence_similarity_76_member_B,RP11-49K4.2->chr11:96241589-96247912:+	ES2_OVARY	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	GAS5--RPL3	2	0	GAS5	3355	chr1:173835666:-	RPL3	14377	chr22:39710851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding),RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3	ES2_OVARY	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	GDI2--RAB10	2	0	GDI2	3440	chr10:5855177:-	RAB10	22430	chr2:26350013:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-,RAB10->RAB10,_member_RAS_oncogene_family,chr2:26256976-26360323:+	ES2_OVARY	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.0095	0.0382	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ES2_OVARY	0.62	1	0.0477	FALSE	275	511	55	178	0	FALSE	ACH-000906
ES2_OVARY	TIMM23--RP11-464F9.1	2	0	TIMM23	4468	chr10:51613218:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ES2_OVARY	1	1	0.0191	TRUE	4	2	0	9	0	FALSE	ACH-000906
ES2_OVARY	U2AF1--PKNOX1	2	0	U2AF1	1137	chr21:44527561:-	PKNOX1	18796	chr21:44424436:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_INVERSION:-:+:[59375],U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-,PKNOX1->Oncogene{Bushman},PBX/knotted_1_homeobox_1,chr21:44394620-44453691:+	ES2_OVARY	1	1	0.0191	TRUE	0	1	0	3	0	TRUE	ACH-000906
ES2_OVARY	UBE2K--FAM192A	2	0	UBE2K	1347	chr4:39700010:+	FAM192A	20786	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	ES2_OVARY	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	YAP1--MAML2	2	0	YAP1	4192	chr11:101985125:+	MAML2	25106	chr11:95724887:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	{Klijn_CCL:Ovary=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	ES2_OVARY	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000906
ES2_OVARY	AMBRA1--GNAS	1	1	AMBRA1	1298	chr11:46615378:-	GNAS	47183	chr20:57470667:+	ONLY_REF_SPLICE	NO	49	521	0.04	0	0.0095	0.0095	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	ES2_OVARY	0	0.04	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000906
ES2_OVARY	ASB1--NDUFA10	1	1	ASB1	1378	chr2:239335760:+	NDUFA10	17964	chr2:240960829:-	ONLY_REF_SPLICE	YES	34	165	0.06	0.01	0.0095	0.0095	ASB1->ankyrin_repeat_and_SOCS_box_containing_1,chr2:239335383-239360891:+,NDUFA10->NADH:ubiquinone_oxidoreductase_subunit_A10,chr2:240831867-240964819:-	ES2_OVARY	0.01	0.06	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000906
ES2_OVARY	CD44--PDHX	1	1	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	1505	80	0	0.02	0.0095	0.0095	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	ES2_OVARY	0	0.02	0.019	FALSE	0	7	0	19	1	FALSE	ACH-000906
ES2_OVARY	KIF2C--TRPC4AP	1	1	KIF2C	2190	chr1:45206679:+	TRPC4AP	21802	chr20:33665977:-	ONLY_REF_SPLICE	NO	269	147	0.01	0.01	0.0095	0.0095	KIF2C->chr1:45205490-45233439:+,kinesin_family_member_2C,TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein	ES2_OVARY	0.01	0.01	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000906
ES2_OVARY	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	17	5	0.11	0.29	0.0095	0.0095	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ES2_OVARY	0.11	0.29	0.019	FALSE	8	57	1	47	0	FALSE	ACH-000906
ES2_OVARY	PROSC--CHMP1A	1	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	NO	122	234	0.02	0.01	0.0095	0.0095	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	ES2_OVARY	0.01	0.02	0.019	FALSE	13	55	3	29	0	FALSE	ACH-000906
ES2_OVARY	RP11-660L16.2--RP11-798M19.6	1	1	RP11-660L16.2	1212	chr11:71159931:+	RP11-798M19.6	6517	chr4:174290761:-	ONLY_REF_SPLICE	YES	243	0	0.01	1	0.0095	0.0095	RP11-660L16.2->chr11:71159720-71163203:+,RP11-798M19.6->chr4:174284931-174291597:-	ES2_OVARY	0.01	1	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000906
ES2_OVARY	SPAG9--NUDT5	1	1	SPAG9	18941	chr17:49082573:-	NUDT5	58275	chr10:12209810:-	ONLY_REF_SPLICE	YES	59	399	0.03	0	0.0095	0.0095	SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,NUDT5->chr10:12207324-12238143:-,nudix_hydrolase_5	ES2_OVARY	0	0.03	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000906
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	118	36	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9998	0.305	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.3048	TRUE	508	994	45	981	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	80	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6778	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6778	TRUE	0	0	0	518	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	63	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	145	5	0.31	0.93	0.5338	0.0169	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.93	0.5507	TRUE	519	3926	326	965	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFS6--CTD-2589H19.4	30	5	NDUFS6	1975	chr5:1802488:+	CTD-2589H19.4	8093	chr5:769045:-	INCL_NON_REF_SPLICE	YES	384	0	0.08	1	0.2542	0.0424	NDUFS6->NADH:ubiquinone_oxidoreductase_subunit_S6,chr5:1801514-1816719:+,CTD-2589H19.4->chr5:767512-769046:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.2966	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	21	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1779	0.0169	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1948	FALSE	462	80	0	856	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	21	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1779	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1779	TRUE	46	1352	75	139	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	8	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	31	17	0.24	0.37	0.0678	0.0169	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.37	0.0847	TRUE	267	562	48	632	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	5244	6664	0	0	0.0424	0.0085	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0509	FALSE	183	104	9	328	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	30	17	0.17	0.26	0.0339	0.0169	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.26	0.0508	TRUE	267	562	48	632	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	5298	0	0	1	0.0339	0.0169	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0508	FALSE	182	97	9	327	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0.0169	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0508	FALSE	462	80	0	856	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	FALSE	183	104	9	328	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-CO3	3	3	MT-ND5	2877	chrM:14213:+	MT-CO3	5951	chrM:9345:+	INCL_NON_REF_SPLICE	YES	0	3934	1	0	0.0254	0.0254	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0508	FALSE	0	15	2	17	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-CO3	3	2	MT-ND5	2730	chrM:14066:+	MT-CO3	6033	chrM:9427:+	INCL_NON_REF_SPLICE	YES	2	5938	0.71	0	0.0254	0.0169	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.71	0.0423	FALSE	0	15	2	17	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-CO3	3	2	MT-ND5	2730	chrM:14066:+	MT-CO3	6178	chrM:9572:+	INCL_NON_REF_SPLICE	YES	2	7167	0.71	0	0.0254	0.0169	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.71	0.0423	FALSE	0	15	2	17	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	2	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0.0169	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0423	FALSE	499	1288	110	792	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0.0085	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	FALSE	499	1288	110	792	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDCA7--PTMA	3	0	CDCA7	1165	chr2:174219712:+	PTMA	17347	chr2:232576058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	CDCA7->cell_division_cycle_associated_7,chr2:174219548-174233725:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK10--NAA50	3	0	CDK10	10791	chr16:89760542:+	NAA50	22810	chr3:113438875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	CDK10->chr16:89747145-89762772:+,cyclin-dependent_kinase_10,NAA50->N(alpha)-acetyltransferase_50,_NatE_catalytic_subunit,chr3:113435307-113465147:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK16--MT-ATP6	3	0	CDK16	9981	chrX:47088265:+	MT-ATP6	14165	chrM:8579:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	CDK16->Oncogene{Bushman},chrX:47077259-47089396:+,cyclin-dependent_kinase_16,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLECL1--KLRK1	3	0	CLECL1	1351	chr12:9885545:-	KLRK1	10914	chr12:10541474:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	CLECL1->C-type_lectin_like_1,chr12:9868456-9885895:-,KLRK1->Oncogene{Bushman},chr12:10524952-10544473:-,killer_cell_lectin_like_receptor_K1	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-273B12.8--UBTF	3	0	CTC-273B12.8	2587	chr19:48984690:+	UBTF	20674	chr17:42283325:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	CTC-273B12.8->chr19:48983104-48985571:+,UBTF->chr17:42282401-42298994:-,upstream_binding_transcription_factor,_RNA_polymerase_I	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOT1L--ZWILCH	3	0	DOT1L	15138	chr19:2210824:+	ZWILCH	57041	chr15:66840824:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+,ZWILCH->chr15:66797297-66842115:+,zwilch_kinetochore_protein	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	E2F2--POLD2	3	0	E2F2	7419	chr1:23842911:-	POLD2	20848	chr7:44155803:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	E2F2->E2F_transcription_factor_2,Oncogene{Bushman},chr1:23832922-23857712:-,POLD2->chr7:44154286-44163957:-,polymerase_(DNA)_delta_2,_accessory_subunit	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-CO3	3	0	MT-ND5	1957	chrM:13293:+	MT-CO3	5956	chrM:9350:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	FALSE	0	16	2	18	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-CO3	3	0	MT-ND5	1147	chrM:12483:+	MT-CO3	6199	chrM:9593:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	FALSE	0	7	0	9	0	FALSE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R13B--MARK3	3	0	PPP1R13B	1292	chr14:104313636:-	MARK3	52962	chr14:103958114:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},PPP1R13B->chr14:104200089-104313927:-,protein_phosphatase_1_regulatory_subunit_13B,MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-832N8.1--PTMA	3	0	RP11-832N8.1	1033	chr11:107779178:+	PTMA	5991	chr2:232573250:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	RP11-832N8.1->chr11:107779146-107779490:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABCA11P--DAZAP1	2	0	ABCA11P	1149	chr4:467770:-	DAZAP1	14041	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ABCA11P->ATP_binding_cassette_subfamily_A_member_11,_pseudogene,chr4:419224-467918:-,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--PAX5	2	0	ABL1	1510	chr9:133589842:+	PAX5	22115	chr9:37015191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,PAX5->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:36833272-37034103:-,paired_box_5	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATAD2--DERL1	2	0	ATAD2	3815	chr8:124408427:-	DERL1	36240	chr8:124042956:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-,DERL1->chr8:124025404-124054663:-,derlin_1	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2L11--NFYB	2	0	BCL2L11	2467	chr2:111878765:+	NFYB	25384	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	BCL2L11->BCL2_like_11,Oncogene{Bushman},chr2:111876955-111926024:+,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CACYBP--DHX9	2	0	CACYBP	2032	chr1:174969331:+	DHX9	16028	chr1:182821368:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	CACYBP->calcyclin_binding_protein,chr1:174968300-174980851:+,DHX9->DEAH-box_helicase_9,Oncogene{Bushman},chr1:182808504-182856886:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC84--ARID1A	2	0	CCDC84	1968	chr11:118869819:+	ARID1A	33003	chr1:27105514:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	CCDC84->chr11:118868852-118886501:+,coiled-coil_domain_containing_84,ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCT2--CCDC14	2	0	CCT2	3929	chr12:69982042:+	CCDC14	20166	chr3:123674962:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+,CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC27--HNRNPH1	2	0	CDC27	2753	chr17:45258928:-	HNRNPH1	39842	chr5:179041960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	CDC27->Oncogene{Bushman},cell_division_cycle_27,chr17:45195069-45266788:-,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT2--NUDT5	2	0	CNOT2	1487	chr12:70637260:+	NUDT5	36625	chr10:12228331:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,NUDT5->chr10:12207324-12238143:-,nudix_hydrolase_5	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR3--DYRK1A	2	0	DSCR3	1724	chr21:38639539:-	DYRK1A	29194	chr21:38844986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	LOCAL_INVERSION:-:+:[97830],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DUS2--UBE2D2	2	0	DUS2	6781	chr16:68059397:+	UBE2D2	29799	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	DUS2->chr16:68021649-68113223:+,dihydrouridine_synthase_2,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EBF1--CYFIP2	2	0	EBF1	6894	chr5:158500404:-	CYFIP2	30915	chr5:156712349:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,CYFIP2->chr5:156693089-156822606:+,cytoplasmic_FMR1_interacting_protein_2	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1G--ZFAND2A	2	0	EEF1G	1948	chr11:62341454:-	ZFAND2A	13339	chr7:1197893:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	EEF1G->chr11:62327073-62342401:-,eukaryotic_translation_elongation_factor_1_gamma,ZFAND2A->chr7:1191707-1200395:-,zinc_finger_AN1-type_containing_2A	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELMO1--GUSBP2	2	0	ELMO1	1575	chr7:37488278:-	GUSBP2	47312	chr6:26856976:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1,GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ETF1--RQCD1	2	0	ETF1	1468	chr5:137878522:-	RQCD1	19896	chr2:219445284:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ETF1->chr5:137841784-137878989:-,eukaryotic_translation_termination_factor_1,RQCD1->chr2:219433303-219461803:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNG7--PAXIP1	2	0	GNG7	2276	chr19:2683478:-	PAXIP1	18567	chr7:154790494:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GNG7->G_protein_subunit_gamma_7,chr19:2511217-2702707:-,PAXIP1->PAX_interacting_protein_1,chr7:154735397-154794794:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HMGN2--SRSF11	2	0	HMGN2	1178	chr1:26799118:+	SRSF11	8868	chr1:70687298:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},HMGN2->chr1:26798941-26802463:+,high_mobility_group_nucleosomal_binding_domain_2,SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPA2B1--TTC1	2	0	HNRNPA2B1	1958	chr7:26240192:-	TTC1	17027	chr5:159462147:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,TTC1->chr5:159436120-159492550:+,tetratricopeptide_repeat_domain_1	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4R--NSMCE1	2	0	IL4R	1353	chr16:27325341:+	NSMCE1	28261	chr16:27268902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	LOCAL_INVERSION:+:-:[44874],IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,NSMCE1->NSE1_homolog,_SMC5-SMC6_complex_component,chr16:27236312-27280115:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	1	0	1	1	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KPNA3--IGJ	2	0	KPNA3	2529	chr13:50321085:-	IGJ	20630	chr4:71532231:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	KPNA3->chr13:50273447-50367057:-,karyopherin_subunit_alpha_3,IGJ->chr4:71521258-71547534:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MBP--ARHGEF7	2	0	MBP	5877	chr18:74817167:-	ARHGEF7	51142	chr13:111896219:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx&tcga_normals:1/3694=0.03%,MBP->chr18:74690783-74845639:-,myelin_basic_protein,ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTG1--CARHSP1	2	0	MTG1	7895	chr10:135216277:+	CARHSP1	18662	chr16:8953192:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	MTG1->chr10:135207598-135234811:+,mitochondrial_ribosome_associated_GTPase_1,CARHSP1->calcium_regulated_heat_stable_protein_1,chr16:8946799-8962866:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOA3--PHTF1	2	0	NCOA3	1163	chr20:46130763:+	PHTF1	30288	chr1:114301355:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,PHTF1->chr1:114239453-114302111:-,putative_homeodomain_transcription_factor_1	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NHSL1--DCAF8	2	0	NHSL1	8956	chr6:138794443:-	DCAF8	32049	chr1:160231148:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	NHSL1->NHS_like_1,chr6:138743180-139013708:-,DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOP56--KANSL2	2	0	NOP56	2249	chr20:2634039:+	KANSL2	21732	chr12:49048843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	NOP56->NOP56_ribonucleoprotein,chr20:2632791-2639039:+,KANSL2->KAT8_regulatory_NSL_complex_subunit_2,chr12:49047184-49076021:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCM1--SMDT1	2	0	PCM1	2417	chr8:17782289:+	SMDT1	52428	chr22:42479123:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1,SMDT1->chr22:42475695-42480288:+,single-pass_membrane_protein_with_aspartate-rich_tail_1	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHF20--RBM39	2	0	PHF20	4583	chr20:34389527:+	RBM39	47544	chr20:34309799:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx_v2:{count=2;pct=0.02%;dist=Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1},{Klijn_CCL:Stomach=1},LOCAL_INVERSION:+:-:[29662],PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2J--PHF20	2	0	POLR2J	3365	chr7:102114808:-	PHF20	9997	chr20:34388016:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	POLR2J->chr7:102113565-102119354:-,polymerase_(RNA)_II_subunit_J,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMD2--BUB3	2	0	PSMD2	3950	chr3:184019446:+	BUB3	14612	chr10:124914434:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	PSMD2->Oncogene{Bushman},chr3:184016497-184026842:+,proteasome_26S_subunit,_non-ATPase_2,BUB3->BUB3,_mitotic_checkpoint_protein,chr10:124913793-124924886:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-689B22.2--ATP2A2	2	0	RP11-689B22.2	3762	chr12:109030231:+	ATP2A2	14100	chr12:110760797:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	RP11-689B22.2->chr12:109022463-109035094:+,ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS12--LARS	2	0	RPS12	2887	chr6:133137702:+	LARS	22709	chr5:145523912:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	RPS12->chr6:133135580-133138703:+,ribosomal_protein_S12,LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTN4IP1--ARID1B	2	0	RTN4IP1	2903	chr6:107070693:-	ARID1B	22372	chr6:157256600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	RTN4IP1->Oncogene{Bushman},chr6:107018903-107077373:-,reticulon_4_interacting_protein_1,ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STMN1--SMIM14	2	0	STMN1	3328	chr1:26231155:-	SMIM14	17747	chr4:39606800:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	STMN1->chr1:26210672-26233482:-,stathmin_1,SMIM14->chr4:39547950-39640710:-,small_integral_membrane_protein_14	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBK1--OAZ2	2	0	TBK1	2877	chr12:64849737:+	OAZ2	32885	chr15:64981368:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,OAZ2->chr15:64979772-64995480:-,ornithine_decarboxylase_antizyme_2	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM258--ATM	2	0	TMEM258	3310	chr11:61557965:-	ATM	69809	chr11:108200941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	TMEM258->chr11:61535973-61560274:-,transmembrane_protein_258,ATM->ATM_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:108093211-108239829:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMX2--TRPM7	2	0	TMX2	3861	chr11:57506732:+	TRPM7	39536	chr15:50878685:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	TMX2->chr11:57480072-57508445:+,thioredoxin_related_transmembrane_protein_2,TRPM7->chr15:50844670-50979012:-,transient_receptor_potential_cation_channel_subfamily_M_member_7	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TPD52--HOOK3	2	0	TPD52	6214	chr8:81083660:-	HOOK3	30642	chr8:42761316:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTBK2--PRRC2C	2	0	TTBK2	4247	chr15:43170747:-	PRRC2C	71130	chr1:171557518:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	TTBK2->chr15:43030932-43213007:-,tau_tubulin_kinase_2,PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF101--INTS2	2	0	ZNF101	1171	chr19:19779775:+	INTS2	16355	chr17:60002460:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ZNF101->chr19:19779605-19794318:+,zinc_finger_protein_101,INTS2->chr17:59942731-60005377:-,integrator_complex_subunit_2	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF468--CNOT11	2	0	ZNF468	4096	chr19:53352340:-	CNOT11	18516	chr2:101881307:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ZNF468->chr19:53341261-53360902:-,zinc_finger_protein_468,CNOT11->CCR4-NOT_transcription_complex_subunit_11,chr2:101869264-101886778:+	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZRANB3--DCUN1D5	2	0	ZRANB3	2907	chr2:136261899:-	DCUN1D5	44535	chr11:102937296:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3,DCUN1D5->chr11:102932805-102962944:-,defective_in_cullin_neddylation_1_domain_containing_5	TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000285
SNU449_LIVER	TIMM23B--LINC00843	182	54	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.724	0.5115	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU449_LIVER	1	1	2.2355	TRUE	508	994	45	981	0	FALSE	ACH-000420
SNU449_LIVER	TIMM23--RP11-464F9.1	112	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	485	1	0.19	0.99	1.0609	0.0379	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU449_LIVER	0.19	0.99	1.0988	TRUE	519	3926	326	965	0	FALSE	ACH-000420
SNU449_LIVER	RP11-435B5.4--OSER1-AS1	86	44	RP11-435B5.4	2843	chr1:143465380:-	OSER1-AS1	24529	chr20:42853461:+	ONLY_REF_SPLICE	YES	2	19	0.98	0.87	0.8146	0.4168	RP11-435B5.4->chr1:143354963-143467632:-,OSER1-AS1->OSER1_antisense_RNA_1_(head_to_head),chr20:42839600-42854667:+	SNU449_LIVER	0.87	0.98	1.2314	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	83	1	MT-ND4	1151	chrM:10910:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	NO	10489	244	0.01	0.26	0.7862	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0.01	0.26	0.7957	FALSE	230	193	14	283	0	FALSE	ACH-000420
SNU449_LIVER	NRIP1--AF127936.7	37	5	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.81	1	0.3505	0.0474	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU449_LIVER	0.81	1	0.3979	FALSE	292	1546	117	613	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	33	1	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	10489	3	0	0.92	0.3126	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.92	0.3221	FALSE	230	193	14	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	31	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	13508	7	0	0.82	0.2936	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.82	0.3031	FALSE	230	193	14	283	0	FALSE	ACH-000420
SNU449_LIVER	HSP90AB1--MT-RNR2	28	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2652	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU449_LIVER	1	1	0.2652	FALSE	13	9	0	364	0	FALSE	ACH-000420
SNU449_LIVER	RP11-435B5.4--OSER1-AS1	16	47	RP11-435B5.4	2843	chr1:143465380:-	OSER1-AS1	22111	chr20:42846007:+	ONLY_REF_SPLICE	YES	2	18	0.97	0.78	0.1516	0.4452	RP11-435B5.4->chr1:143354963-143467632:-,OSER1-AS1->OSER1_antisense_RNA_1_(head_to_head),chr20:42839600-42854667:+	SNU449_LIVER	0.78	0.97	0.5968	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	HELLS--EYS	21	12	HELLS	1709	chr10:96306255:+	EYS	80034	chr6:64791895:-	ONLY_REF_SPLICE	YES	103	0	0.24	1	0.1989	0.1137	HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific,EYS->chr6:64429876-66417118:-,eyes_shut_homolog_(Drosophila)	SNU449_LIVER	0.24	1	0.3126	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	20	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13404	9	0	0.7	0.1894	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.7	0.1989	FALSE	230	198	14	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-CO1	18	9	MT-ND4	1534	chrM:11293:+	MT-CO1	5695	chrM:6220:+	INCL_NON_REF_SPLICE	YES	19356	19376	0	0	0.1705	0.0853	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.2558	FALSE	19	92	11	16	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND6--MT-TE	19	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.18	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU449_LIVER	1	1	0.18	FALSE	499	1288	110	792	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	18	1	MT-ND4	1152	chrM:10911:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	10507	7	0	0.73	0.1705	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.73	0.18	FALSE	230	193	14	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-CO1	15	9	MT-ND4	1903	chrM:11662:+	MT-CO1	6015	chrM:6540:+	INCL_NON_REF_SPLICE	NO	15998	22380	0	0	0.1421	0.0853	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.2274	FALSE	19	92	11	16	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	16	4	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15504	9	0	0.69	0.1516	0.0379	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.69	0.1895	FALSE	231	205	14	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	15	4	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	18635	3	0	0.86	0.1421	0.0379	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.86	0.18	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	HSP90AB1--MT-RNR2	15	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1421	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU449_LIVER	1	1	0.1421	FALSE	13	9	0	364	0	FALSE	ACH-000420
SNU449_LIVER	ZNF654--HMGB2	15	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1421	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU449_LIVER	1	1	0.1421	TRUE	0	0	0	518	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	13	5	MT-ND4	1566	chrM:11325:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	18479	518	0	0.03	0.1231	0.0474	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.03	0.1705	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MATN2--C8orf47	12	7	MATN2	2857	chr8:98900470:+	C8orf47	31355	chr8:99101304:+	ONLY_REF_SPLICE	YES	107	41	0.15	0.32	0.1137	0.0663	NEIGHBORS[27595],MATN2->chr8:98881068-99048944:+,matrilin_2,C8orf47->chr8:99076539-99105838:+	SNU449_LIVER	0.15	0.32	0.18	FALSE	0	0	0	1	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	12	7	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	15446	3	0	0.86	0.1137	0.0663	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.86	0.18	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	11	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15589	9	0	0.67	0.1042	0.0663	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.67	0.1705	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ATP6--MT-CO1	12	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	13101	23024	0	0	0.1137	0.0189	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.1326	FALSE	183	104	9	328	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	10	10	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	7960	518	0	0.04	0.0947	0.0947	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.04	0.1894	FALSE	231	215	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ATP6--MT-CO1	11	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	15421	22923	0	0	0.1042	0.0379	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.1421	FALSE	183	104	9	328	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	9	12	MT-ND4	2053	chrM:11812:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14323	43	0	0.33	0.0853	0.1137	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.33	0.199	FALSE	231	215	16	283	0	FALSE	ACH-000420
SNU449_LIVER	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1137	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU449_LIVER	1	1	0.1137	TRUE	0	0	0	434	0	FALSE	ACH-000420
SNU449_LIVER	RP11-435B5.4--OSER1-AS1	1	44	RP11-435B5.4	2843	chr1:143465380:-	OSER1-AS1	23427	chr20:42852359:+	ONLY_REF_SPLICE	NO	2	23	0.96	0.66	0.0095	0.4168	RP11-435B5.4->chr1:143354963-143467632:-,OSER1-AS1->OSER1_antisense_RNA_1_(head_to_head),chr20:42839600-42854667:+	SNU449_LIVER	0.66	0.96	0.4263	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	MT-ND6--MT-TE	10	6	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0947	0.0568	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU449_LIVER	0.94	1	0.1515	FALSE	499	1288	110	792	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND6--MT-TE	9	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.81	1	0.0853	0.0758	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU449_LIVER	0.81	1	0.1611	FALSE	499	1288	110	792	0	FALSE	ACH-000420
SNU449_LIVER	SLC16A12--LIPA	9	8	SLC16A12	5062	chr10:91222136:-	LIPA	22973	chr10:91074416:-	ONLY_REF_SPLICE	YES	89	1	0.16	0.94	0.0853	0.0758	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SNU449_LIVER	0.16	0.94	0.1611	FALSE	1	78	7	7	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-CO1	10	3	MT-ND4	1201	chrM:10960:+	MT-CO1	5811	chrM:6336:+	INCL_NON_REF_SPLICE	YES	13288	20986	0	0	0.0947	0.0284	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.1231	FALSE	19	89	11	16	0	FALSE	ACH-000420
SNU449_LIVER	GATAD2A--RP11-678G14.3	9	2	GATAD2A	9305	chr19:19576423:+	RP11-678G14.3	27312	chr19:21754341:-	ONLY_REF_SPLICE	YES	118	0	0.09	1	0.0853	0.0189	GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,RP11-678G14.3->chr19:21753624-21770124:-	SNU449_LIVER	0.09	1	0.1042	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	SLC16A12--LIPA	8	6	SLC16A12	5062	chr10:91222136:-	LIPA	29664	chr10:91007406:-	ONLY_REF_SPLICE	YES	89	52	0.14	0.21	0.0758	0.0568	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SNU449_LIVER	0.14	0.21	0.1326	FALSE	12	128	21	13	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-CO1	7	9	MT-ND4	1773	chrM:11532:+	MT-CO1	5916	chrM:6441:+	INCL_NON_REF_SPLICE	YES	15585	21439	0	0	0.0663	0.0853	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.1516	FALSE	19	92	11	16	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND6--MT-TE	7	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.76	1	0.0663	0.0853	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU449_LIVER	0.76	1	0.1516	FALSE	499	1288	110	792	0	FALSE	ACH-000420
SNU449_LIVER	IGFBP7--MT-ND4L	9	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0853	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU449_LIVER	1	1	0.0853	FALSE	1	0	0	30	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND6--MT-TE	5	15	MT-ND6	1090	chrM:14584:-	MT-TE	4503	chrM:14765:-	INCL_NON_REF_SPLICE	NO	1	0	0.95	1	0.0474	0.1421	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU449_LIVER	0.95	1	0.1895	FALSE	499	1288	110	792	0	FALSE	ACH-000420
SNU449_LIVER	ARMC4--RP11-748L13.2	8	2	ARMC4	13214	chr10:28250497:-	RP11-748L13.2	42094	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0758	0.0189	ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-,RP11-748L13.2->chr10:27620286-27630181:-	SNU449_LIVER	1	1	0.0947	TRUE	0	6	2	1	6	TRUE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	5	14	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	5216	43	0	0.31	0.0474	0.1326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.31	0.18	FALSE	218	210	16	281	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND6--MT-TE	7	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0663	0.0568	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU449_LIVER	0.93	1	0.1231	FALSE	499	1288	110	792	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	8	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13508	9	0	0.5	0.0758	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.5	0.0853	FALSE	230	193	14	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND6--MT-TE	8	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0758	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU449_LIVER	1	1	0.0758	FALSE	499	1288	110	792	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	3	19	MT-ND4	2312	chrM:12071:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0.18	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	1	1	0.2084	FALSE	209	205	15	279	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	5	11	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	16272	3	0	0.84	0.0474	0.1042	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.84	0.1516	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	4	14	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2738	43	0.01	0.3	0.0379	0.1326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0.01	0.3	0.1705	FALSE	216	209	16	281	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	3	18	MT-ND4	2237	chrM:11996:+	MT-ATP8	5422	chrM:8409:+	INCL_NON_REF_SPLICE	YES	3623	0	0.01	1	0.0284	0.1705	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0.01	1	0.1989	FALSE	216	209	16	281	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	6	4	MT-ND4	1477	chrM:11236:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17515	9	0	0.53	0.0568	0.0379	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.53	0.0947	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	5	8	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	15600	0	0	1	0.0474	0.0758	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	1	0.1232	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ATP6--MT-CO1	6	3	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	13247	21247	0	0	0.0568	0.0284	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.0852	FALSE	183	104	9	328	0	FALSE	ACH-000420
SNU449_LIVER	MT-ATP6--MT-CO1	6	2	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12513	22923	0	0	0.0568	0.0189	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.0757	FALSE	183	104	9	328	0	FALSE	ACH-000420
SNU449_LIVER	MT-ATP6--MT-CO1	5	6	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4002	23346	0	0	0.0474	0.0568	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.1042	FALSE	183	104	9	328	0	FALSE	ACH-000420
SNU449_LIVER	MT-ATP6--MT-CO1	6	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	12831	22461	0	0	0.0568	0.0189	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.0757	FALSE	183	104	9	328	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	4	10	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15281	43	0	0.25	0.0379	0.0947	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.25	0.1326	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND6--MT-TE	5	6	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0474	0.0568	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU449_LIVER	0.92	1	0.1042	FALSE	499	1288	110	792	0	FALSE	ACH-000420
SNU449_LIVER	NRIP1--AF127936.7	5	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	37	0	0.23	1	0.0474	0.0568	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU449_LIVER	0.23	1	0.1042	FALSE	125	705	46	456	0	FALSE	ACH-000420
SNU449_LIVER	MT-ATP6--MT-CO1	4	9	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	7149	21280	0	0	0.0379	0.0853	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.1232	FALSE	183	104	9	328	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	3	13	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	16119	0	0	1	0.0284	0.1231	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	1	0.1515	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-CO1	4	9	MT-ND4	1843	chrM:11602:+	MT-CO1	6015	chrM:6540:+	INCL_NON_REF_SPLICE	YES	15783	22380	0	0	0.0379	0.0853	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.1232	FALSE	19	92	11	16	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	4	7	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	16068	819	0	0.01	0.0379	0.0663	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.01	0.1042	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	4	7	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	15505	2	0	0.85	0.0379	0.0663	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.85	0.1042	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	3	11	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	15176	43	0	0.25	0.0284	0.1042	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.25	0.1326	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	NRIP1--AF127936.7	3	11	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	42	0	0.25	1	0.0284	0.1042	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU449_LIVER	0.25	1	0.1326	FALSE	164	806	69	479	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	5	2	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	13814	3	0	0.7	0.0474	0.0189	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.7	0.0663	FALSE	231	204	14	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	5	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	13544	43	0	0.12	0.0474	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.12	0.0569	FALSE	230	198	14	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	4	5	MT-ND4	1531	chrM:11290:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	19528	7	0	0.56	0.0379	0.0474	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.56	0.0853	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-CO1	3	9	MT-ND4	1500	chrM:11259:+	MT-CO1	5872	chrM:6397:+	INCL_NON_REF_SPLICE	YES	17398	21072	0	0	0.0284	0.0853	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.1137	FALSE	19	92	11	16	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND6--MT-TE	3	9	MT-ND6	1334	chrM:14340:-	MT-TE	4550	chrM:14718:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0284	0.0853	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU449_LIVER	0.92	1	0.1137	FALSE	499	1288	110	792	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	4	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17438	3	0	0.73	0.0379	0.0379	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.73	0.0758	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	3	8	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	15432	3	0	0.79	0.0284	0.0758	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.79	0.1042	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	4	4	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	17432	3	0	0.73	0.0379	0.0379	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.73	0.0758	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU449_LIVER	1	1	0.0474	TRUE	0	0	0	434	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	4	3	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	YES	13770	0	0	1	0.0379	0.0284	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	1	0.0663	FALSE	231	204	14	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-CO1	4	3	MT-ND4	1245	chrM:11004:+	MT-CO1	6028	chrM:6553:+	INCL_NON_REF_SPLICE	YES	13676	23179	0	0	0.0379	0.0284	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.0663	FALSE	19	89	11	16	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-CO1	4	3	MT-ND4	1234	chrM:10993:+	MT-CO1	6016	chrM:6541:+	INCL_NON_REF_SPLICE	YES	13618	22526	0	0	0.0379	0.0284	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.0663	FALSE	19	89	11	16	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND6--MT-TE	3	7	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0284	0.0663	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU449_LIVER	0.91	1	0.0947	FALSE	499	1288	110	792	0	FALSE	ACH-000420
SNU449_LIVER	PRR16--CTD-2334D19.1	4	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	34	0	0.17	1	0.0379	0.0284	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SNU449_LIVER	0.17	1	0.0663	FALSE	56	216	12	147	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	4	1	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	7658	3	0	0.62	0.0379	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.62	0.0474	FALSE	230	193	14	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	3	5	MT-ND4	1528	chrM:11287:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19614	9	0	0.47	0.0284	0.0474	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.47	0.0758	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	4	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	NO	13533	62	0	0.07	0.0379	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.07	0.0474	FALSE	231	204	14	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	4	1	MT-ND4	1152	chrM:10911:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	NO	10507	518	0	0.01	0.0379	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.01	0.0474	FALSE	230	193	14	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	3	5	MT-ND4	1528	chrM:11287:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	NO	19614	4	0	0.67	0.0284	0.0474	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.67	0.0758	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	4	1	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	8067	3	0	0.62	0.0379	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.62	0.0474	FALSE	230	193	14	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	3	5	MT-ND4	1510	chrM:11269:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18165	9	0	0.47	0.0284	0.0474	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.47	0.0758	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	VIM--TMSB4X	4	1	VIM	2162	chr10:17271419:+	TMSB4X	13357	chrX:12994379:+	INCL_NON_REF_SPLICE	YES	6424	190	0	0.03	0.0379	0.0095	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SNU449_LIVER	0	0.03	0.0474	FALSE	0	0	0	15	0	FALSE	ACH-000420
SNU449_LIVER	APP--MT-ND2	4	0	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU449_LIVER	1	1	0.0379	FALSE	0	1	0	51	0	FALSE	ACH-000420
SNU449_LIVER	CD99L2--ZNF280C	4	0	CD99L2	9528	chrX:149962164:-	ZNF280C	20807	chrX:129394439:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0379	0	CD99L2->CD99_molecule_like_2,chrX:149934810-150067289:-,ZNF280C->chrX:129336685-129402873:-,zinc_finger_protein_280C	SNU449_LIVER	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	IGFBP7--MT-ND4L	4	0	IGFBP7	1135	chr4:57976417:-	MT-ND4L	10479	chrM:10673:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU449_LIVER	1	1	0.0379	FALSE	1	0	0	30	0	FALSE	ACH-000420
SNU449_LIVER	MT-CO2--MT-ND2	3	4	MT-CO2	1532	chrM:8117:+	MT-ND2	4812	chrM:4597:+	INCL_NON_REF_SPLICE	YES	5881	4004	0	0	0.0284	0.0379	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU449_LIVER	0	0	0.0663	FALSE	105	46	5	21	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	3	4	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	18124	7	0	0.5	0.0284	0.0379	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.5	0.0663	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	3	4	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	17002	4	0	0.64	0.0284	0.0379	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.64	0.0663	FALSE	231	205	14	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	3	4	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18064	43	0	0.14	0.0284	0.0379	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.14	0.0663	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND6--MT-TE	4	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU449_LIVER	1	1	0.0379	FALSE	499	1288	110	792	0	FALSE	ACH-000420
SNU449_LIVER	VIM--TMSB4X	4	0	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SNU449_LIVER	1	1	0.0379	TRUE	0	0	0	15	0	TRUE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	3	3	MT-ND4	1452	chrM:11211:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	18061	518	0	0.01	0.0284	0.0284	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.01	0.0568	FALSE	231	217	16	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-CO1	3	3	MT-ND4	1301	chrM:11060:+	MT-CO1	5922	chrM:6447:+	INCL_NON_REF_SPLICE	YES	17059	21339	0	0	0.0284	0.0284	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.0568	FALSE	19	90	11	16	0	FALSE	ACH-000420
SNU449_LIVER	HDX--ABCD1	3	2	HDX	6553	chrX:83695540:-	ABCD1	29397	chrX:153008441:+	ONLY_REF_SPLICE	YES	16	10	0.24	0.33	0.0284	0.0189	HDX->chrX:83572882-83757487:-,highly_divergent_homeobox,ABCD1->ATP_binding_cassette_subfamily_D_member_1,chrX:152990323-153010216:+	SNU449_LIVER	0.24	0.33	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	3	2	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	15524	1790	0	0	0.0284	0.0189	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0	0.0473	FALSE	231	205	14	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-CO1	3	2	MT-ND4	1452	chrM:11211:+	MT-CO1	6584	chrM:7109:+	INCL_NON_REF_SPLICE	YES	18067	20600	0	0	0.0284	0.0189	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.0473	FALSE	19	92	11	16	0	FALSE	ACH-000420
SNU449_LIVER	RP11-120D5.1--MID1	3	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	148	0.62	0.03	0.0284	0.0189	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU449_LIVER	0.03	0.62	0.0473	FALSE	16	356	14	466	0	FALSE	ACH-000420
SNU449_LIVER	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7266	chr6:44221089:+	MT-RNR2	10831	chrM:1704:+	INCL_NON_REF_SPLICE	YES	3512	0	0	1	0.0284	0.0095	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU449_LIVER	0	1	0.0379	FALSE	13	9	0	364	0	FALSE	ACH-000420
SNU449_LIVER	MT-ATP6--MT-CO1	3	1	MT-ATP6	1380	chrM:8906:+	MT-CO1	5953	chrM:7175:+	INCL_NON_REF_SPLICE	YES	16170	15855	0	0	0.0284	0.0095	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU449_LIVER	0	0	0.0379	FALSE	183	104	9	328	0	FALSE	ACH-000420
SNU449_LIVER	MT-CO2--MT-ND2	3	1	MT-CO2	1229	chrM:7814:+	MT-ND2	5123	chrM:4908:+	INCL_NON_REF_SPLICE	YES	16536	14668	0	0	0.0284	0.0095	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU449_LIVER	0	0	0.0379	FALSE	105	46	5	21	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	3	1	MT-ND4	1152	chrM:10911:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	10507	7	0	0.36	0.0284	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.36	0.0379	FALSE	230	193	14	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	3	1	MT-ND4	1253	chrM:11012:+	MT-ATP8	5527	chrM:8514:+	INCL_NON_REF_SPLICE	YES	14023	1864	0	0	0.0284	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0	0.0379	FALSE	231	204	14	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	3	1	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9896	43	0	0.09	0.0284	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.09	0.0379	FALSE	230	193	14	283	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND4--MT-ATP8	3	1	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	13606	518	0	0.01	0.0284	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	0	0.01	0.0379	FALSE	231	204	14	283	0	FALSE	ACH-000420
SNU449_LIVER	APP--MT-ND2	3	0	APP	11652	chr21:27394197:-	MT-ND2	33030	chrM:5324:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU449_LIVER	1	1	0.0284	FALSE	0	1	0	51	0	FALSE	ACH-000420
SNU449_LIVER	MT-CO2--MT-ND2	3	0	MT-CO2	1285	chrM:7870:+	MT-ND2	5522	chrM:5307:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU449_LIVER	1	1	0.0284	FALSE	105	46	5	21	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU449_LIVER	1	1	0.0284	FALSE	499	1288	110	792	0	FALSE	ACH-000420
SNU449_LIVER	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU449_LIVER	1	1	0.0284	FALSE	499	1288	110	792	0	FALSE	ACH-000420
SNU449_LIVER	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU449_LIVER	1	1	0.0284	TRUE	0	0	0	434	0	FALSE	ACH-000420
SNU449_LIVER	SH3BGRL3--MT-ATP8	3	0	SH3BGRL3	3089	chr1:26607755:+	MT-ATP8	6403	chrM:8427:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	SH3BGRL3->SH3_domain_binding_glutamate_rich_protein_like_3,chr1:26605667-26608007:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU449_LIVER	1	1	0.0284	FALSE	0	0	0	1	0	FALSE	ACH-000420
SNU449_LIVER	SLC16A12--LIPA	1	8	SLC16A12	5062	chr10:91222136:-	LIPA	24090	chr10:91053425:-	ONLY_REF_SPLICE	YES	89	1	0.09	0.9	0.0095	0.0758	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SNU449_LIVER	0.09	0.9	0.0853	FALSE	3	9	0	3	0	FALSE	ACH-000420
SNU449_LIVER	VIM--CYR61	3	0	VIM	2081	chr10:17271338:+	CYR61	12321	chr1:86046560:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,VIM->chr10:17270258-17279592:+,vimentin,CYR61->Oncogene{Bushman},chr1:86046444-86049645:+,cysteine_rich_angiogenic_inducer_61	SNU449_LIVER	1	1	0.0284	TRUE	0	0	0	2	0	TRUE	ACH-000420
SNU449_LIVER	HDX--ABCD1	2	2	HDX	5499	chrX:83723480:-	ABCD1	29397	chrX:153008441:+	ONLY_REF_SPLICE	YES	17	10	0.19	0.29	0.0189	0.0189	HDX->chrX:83572882-83757487:-,highly_divergent_homeobox,ABCD1->ATP_binding_cassette_subfamily_D_member_1,chrX:152990323-153010216:+	SNU449_LIVER	0.19	0.29	0.0378	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	42	11	0.09	0.27	0.0189	0.0189	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU449_LIVER	0.09	0.27	0.0378	FALSE	8	57	1	47	0	FALSE	ACH-000420
SNU449_LIVER	RP11-275N1.1--NEBL	2	1	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	4	19	0.43	0.14	0.0189	0.0095	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	SNU449_LIVER	0.14	0.43	0.0284	TRUE	0	2	0	25	2	FALSE	ACH-000420
SNU449_LIVER	AC002066.1--AC073130.1	2	0	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	SNU449_LIVER	1	1	0.0189	FALSE	0	3	0	33	0	FALSE	ACH-000420
SNU449_LIVER	HELLS--EYS	1	4	HELLS	1709	chr10:96306255:+	EYS	81181	chr6:64776384:-	ONLY_REF_SPLICE	NO	103	2	0.05	0.71	0.0095	0.0379	HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific,EYS->chr6:64429876-66417118:-,eyes_shut_homolog_(Drosophila)	SNU449_LIVER	0.05	0.71	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	RP11-275N1.1--NEBL	2	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	SNU449_LIVER	1	1	0.0189	TRUE	0	0	0	21	0	FALSE	ACH-000420
SNU449_LIVER	SCARB1--UBC	2	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU449_LIVER	1	1	0.0189	TRUE	55	66	6	101	0	FALSE	ACH-000420
SNU449_LIVER	ZNF280D--PICALM	2	0	ZNF280D	2032	chr15:57209738:-	PICALM	51815	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	ZNF280D->chr15:56922379-57210769:-,zinc_finger_protein_280D,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	SNU449_LIVER	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	HELLS--EYS	1	2	HELLS	1709	chr10:96306255:+	EYS	82335	chr6:64709076:-	ONLY_REF_SPLICE	YES	103	5	0.03	0.38	0.0095	0.0189	HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific,EYS->chr6:64429876-66417118:-,eyes_shut_homolog_(Drosophila)	SNU449_LIVER	0.03	0.38	0.0284	TRUE	0	0	0	1	0	FALSE	ACH-000420
SNU449_LIVER	ECHDC2--CCT2	1	1	ECHDC2	2471	chr1:53387225:-	CCT2	26911	chr12:69983265:+	ONLY_REF_SPLICE	YES	80	496	0.02	0	0.0095	0.0095	ECHDC2->chr1:53361656-53392884:-,enoyl-CoA_hydratase_domain_containing_2,CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+	SNU449_LIVER	0	0.02	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000420
SNU449_LIVER	HDX--ABCD1	1	1	HDX	2247	chrX:83743032:-	ABCD1	29397	chrX:153008441:+	ONLY_REF_SPLICE	YES	8	10	0.2	0.17	0.0095	0.0095	HDX->chrX:83572882-83757487:-,highly_divergent_homeobox,ABCD1->ATP_binding_cassette_subfamily_D_member_1,chrX:152990323-153010216:+	SNU449_LIVER	0.17	0.2	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	HDX--ABCD1	1	1	HDX	1138	chrX:83757350:-	ABCD1	29397	chrX:153008441:+	ONLY_REF_SPLICE	YES	3	10	0.4	0.17	0.0095	0.0095	HDX->chrX:83572882-83757487:-,highly_divergent_homeobox,ABCD1->ATP_binding_cassette_subfamily_D_member_1,chrX:152990323-153010216:+	SNU449_LIVER	0.17	0.4	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000420
SNU449_LIVER	MSH5--AIF1	1	1	MSH5	3633	chr6:31710947:+	AIF1	24171	chr6:31584121:+	ONLY_REF_SPLICE	YES	36	1	0.05	0.67	0.0095	0.0095	MSH5->chr6:31707725-31732622:+,mutS_homolog_5,AIF1->allograft_inflammatory_factor_1,chr6:31582961-31584798:+	SNU449_LIVER	0.05	0.67	0.019	TRUE	0	0	0	2	0	TRUE	ACH-000420
SNU449_LIVER	VAV3--GPSM2	1	1	VAV3	26080	chr1:108226110:-	GPSM2	50223	chr1:109439486:+	ONLY_REF_SPLICE	YES	242	44	0.01	0.04	0.0095	0.0095	VAV3->Oncogene{Bushman},chr1:108113782-108507766:-,vav_guanine_nucleotide_exchange_factor_3,GPSM2->G-protein_signaling_modulator_2,chr1:109417972-109477167:+	SNU449_LIVER	0.01	0.04	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000420
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	PPP1R12A--PAWR	160	66	PPP1R12A	1766	chr12:80328475:-	PAWR	45995	chr12:80014987:-	ONLY_REF_SPLICE	YES	57	51	0.8	0.82	1.7771	0.7331	{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[82466],PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.8	0.82	2.5102	FALSE	0	1	0	2	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	TIMM23B--LINC00843	104	38	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1551	0.4221	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	1.5772	TRUE	508	994	45	981	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	TIMM23--RP11-464F9.1	63	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	213	3	0.25	0.96	0.6997	0.0889	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.25	0.96	0.7886	TRUE	519	3926	326	965	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	5	208	MT-ND4	2041	chrM:11800:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	16984	0	0.01	1	0.0555	2.3103	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.01	1	2.3658	FALSE	344	826	44	305	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	4	204	MT-ND4	1222	chrM:10981:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	65	0	0.76	1	0.0444	2.2658	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.76	1	2.3102	FALSE	344	827	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	47	31	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1559	0	0.05	1	0.522	0.3443	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.05	1	0.8663	FALSE	344	827	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	4	203	MT-ND4	1220	chrM:10979:+	MT-ND4L	5536	chrM:10627:+	INCL_NON_REF_SPLICE	YES	63	0	0.77	1	0.0444	2.2547	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.77	1	2.2991	FALSE	344	827	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-TA--MT-TC	54	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5998	0.0333	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.6331	FALSE	462	80	0	856	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	4	201	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	19	0	0.92	1	0.0444	2.2325	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.92	1	2.2769	FALSE	344	826	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	3	204	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	NO	50	0	0.81	1	0.0333	2.2658	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.81	1	2.2991	FALSE	344	826	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	17	144	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	9192	0	0.02	1	0.1888	1.5994	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.02	1	1.7882	FALSE	344	827	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	3	199	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	16	0	0.93	1	0.0333	2.2103	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.93	1	2.2436	FALSE	344	826	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	11	139	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	11	0	0.93	1	0.1222	1.5439	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.93	1	1.6661	FALSE	344	821	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	3	169	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	11	0	0.94	1	0.0333	1.8771	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.94	1	1.9104	FALSE	344	826	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	AP003900.6--AC011718.2	41	1	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4554	0.0111	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.4665	TRUE	0	3	0	38	3	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	3	149	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	17	0	0.9	1	0.0333	1.6549	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.9	1	1.6882	FALSE	344	826	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	3	137	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	155	0	0.47	1	0.0333	1.5217	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.47	1	1.555	FALSE	344	827	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	3	117	MT-ND4	1060	chrM:10819:+	MT-ND4L	5532	chrM:10623:+	INCL_NON_REF_SPLICE	YES	9	0	0.93	1	0.0333	1.2995	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.93	1	1.3328	FALSE	344	821	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND6--MT-TE	28	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.311	0.0111	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.3221	FALSE	499	1288	110	792	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	ADI1--JUND	22	0	ADI1	1068	chr2:3523440:-	JUND	14746	chr19:18391078:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2444	0	GTEx&tcga_normals:1/3694=0.03%,ADI1->acireductone_dioxygenase_1,chr2:3501132-3523507:-,JUND->JunD_proto-oncogene,_AP-1_transcription_factor_subunit,Oncogene{Bushman},chr19:18390563-18392432:-	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.2444	TRUE	0	0	0	1	0	TRUE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	C15orf57--CBX3	18	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	55	40	0.36	0.44	0.1999	0.1444	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.36	0.44	0.3443	TRUE	267	562	48	632	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	PPP1R12A--PAWR	3	68	PPP1R12A	1766	chr12:80328475:-	PAWR	42437	chr12:80062188:-	ONLY_REF_SPLICE	YES	57	54	0.55	0.57	0.0333	0.7553	{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[82466],PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.55	0.57	0.7886	FALSE	0	0	0	1	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	12	31	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	11737	0	0	1	0.1333	0.3443	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	1	0.4776	FALSE	344	827	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	12	31	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	938	0	0.04	1	0.1333	0.3443	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.04	1	0.4776	FALSE	344	827	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-TA--MT-TC	18	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1999	0.0333	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.2332	FALSE	462	80	0	856	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	4	53	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.0444	0.5887	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.95	1	0.6331	FALSE	344	821	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	NPM1P24--SET	17	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1888	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.1888	TRUE	0	0	0	434	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	3	53	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1393	0	0.04	1	0.0333	0.5887	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.04	1	0.622	FALSE	344	827	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND6--MT-TE	16	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1777	0.0111	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.1888	FALSE	499	1288	110	792	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	16	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1777	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.1777	FALSE	230	193	14	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	7	31	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	7	0	0.84	1	0.0777	0.3443	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.84	1	0.422	FALSE	344	821	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND6--MT-TE	12	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1333	0.1111	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.2444	FALSE	499	1288	110	792	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	AP003900.6--AC011718.2	12	9	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1333	0.1	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.95	1	0.2333	TRUE	0	5	0	45	5	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	3	44	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.0333	0.4887	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.96	1	0.522	FALSE	344	821	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-TL1--MT-RNR2	3	43	MT-TL1	1095	chrM:3324:+	MT-RNR2	5554	chrM:3149:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.94	0.0333	0.4776	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.94	1	0.5109	FALSE	7	521	16	32	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-CO1--MT-ND1	13	1	MT-CO1	1699	chrM:6602:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	27643	8865	0	0	0.1444	0.0111	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.1555	FALSE	39	30	6	19	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-CO3--MT-ATP6	3	37	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	4	0	0.91	1	0.0333	0.411	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.91	1	0.4443	FALSE	189	492	56	216	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND6--MT-TE	10	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1111	0.1	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.2111	FALSE	499	1288	110	792	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-TL1--MT-RNR2	12	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1333	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.1333	FALSE	7	521	16	32	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1333	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.1333	TRUE	46	1352	75	139	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-CO3--MT-ATP6	3	34	MT-CO3	1666	chrM:9872:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0.3776	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.4109	FALSE	189	492	56	216	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-CO3--MT-ATP6	3	32	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0333	0.3554	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.95	1	0.3887	FALSE	189	492	56	216	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	10	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19768	5	0	0.74	0.1111	0.0444	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0.74	0.1555	FALSE	231	217	16	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-CO3--MT-ATP6	3	31	MT-CO3	1075	chrM:9281:+	MT-ATP6	5166	chrM:8908:+	INCL_NON_REF_SPLICE	YES	0	29	1	0.54	0.0333	0.3443	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.54	1	0.3776	FALSE	189	492	56	216	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	RP11-680G10.1--GSE1	10	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	38	1	0.25	0.1111	0.0333	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.25	1	0.1444	TRUE	465	1949	224	605	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-CO3--MT-ATP6	3	30	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0.3332	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.3665	FALSE	189	492	56	216	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	4	26	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	50	0	0.38	1	0.0444	0.2888	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.38	1	0.3332	FALSE	344	826	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	RP11-123O10.4--GRIP1	10	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1111	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.1111	FALSE	416	2512	207	587	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ATP6--MT-CO1	9	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	10616	25756	0	0	0.1	0.0222	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.1222	FALSE	183	104	9	328	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ATP6--MT-CO1	9	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	9424	27640	0	0	0.1	0.0222	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.1222	FALSE	183	104	9	328	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	6	14	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	136	0	0.13	1	0.0666	0.1555	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.13	1	0.2221	FALSE	344	827	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-CO1--MT-ND1	9	1	MT-CO1	1653	chrM:6556:+	MT-ND1	5761	chrM:3525:+	INCL_NON_REF_SPLICE	YES	28235	9269	0	0	0.1	0.0111	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.1111	FALSE	39	30	6	19	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	9	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.1	FALSE	230	198	14	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	NPM1P24--SET	9	0	NPM1P24	1378	chr10:74677915:-	SET	12311	chr9:131456206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.1	TRUE	0	0	0	434	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-CO3--MT-ATP6	3	21	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0.2332	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.2665	FALSE	189	492	56	216	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	8	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0889	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0889	FALSE	231	205	14	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	C15orf57--CBX3	5	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	55	41	0.21	0.27	0.0555	0.1111	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.21	0.27	0.1666	TRUE	267	562	48	632	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ATP6--MT-CO1	7	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	9029	25266	0	0	0.0777	0.0111	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0888	FALSE	183	104	9	328	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	7	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	9	0	0.47	1	0.0777	0.0111	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.47	1	0.0888	FALSE	344	821	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0777	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0777	FALSE	499	1288	110	792	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	3	14	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	52	0	0.25	1	0.0333	0.1555	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.25	1	0.1888	FALSE	344	826	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	CHSY3--HSPA8P4	6	1	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	12	0	0.37	1	0.0666	0.0111	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.37	1	0.0777	FALSE	89	26	1	44	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ATP6--MT-CO1	6	1	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	9481	24968	0	0	0.0666	0.0111	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0777	FALSE	183	104	9	328	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND3--MT-ATP8	6	1	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	NO	126	1	0.05	0.88	0.0666	0.0111	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.05	0.88	0.0777	FALSE	351	233	23	137	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	5	5	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5750	62	0	0.14	0.0555	0.0555	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0.14	0.111	FALSE	218	210	16	281	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	HSPBP1--GRK5	6	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0666	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0666	TRUE	1	39	0	134	39	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ATP6--MT-CO1	3	12	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	1775	24506	0.01	0	0.0333	0.1333	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0.01	0.1666	FALSE	183	104	9	328	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-CO1--MT-ND1	6	0	MT-CO1	1578	chrM:6481:+	MT-ND1	6331	chrM:4095:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0666	0	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0666	FALSE	39	30	6	19	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	6	0	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0666	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0666	FALSE	231	205	14	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	4	8	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	6258	0	0	1	0.0444	0.0889	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	1	0.1333	FALSE	222	212	16	282	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND6--MT-TE	3	12	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0.1333	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.1666	FALSE	499	1288	110	792	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0666	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0666	FALSE	462	80	0	856	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-CO1--MT-ND1	5	3	MT-CO1	1704	chrM:6607:+	MT-ND1	5565	chrM:3329:+	INCL_NON_REF_SPLICE	YES	27288	0	0	1	0.0555	0.0333	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	1	0.0888	FALSE	39	30	6	19	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	5	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0.0333	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0888	FALSE	344	821	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND5--MT-TL2	5	3	MT-ND5	1110	chrM:12446:+	MT-TL2	5833	chrM:12286:+	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0555	0.0333	LOCAL_REARRANGEMENT:+:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-TL2->chrM:12266-12336:+,mitochondrially_encoded_tRNA_leucine_2_(CUN)	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.89	1	0.0888	FALSE	3	9	1	5	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ATP6--MT-CO1	5	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9375	28090	0	0	0.0555	0.0222	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0777	FALSE	183	104	9	328	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	5	2	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	22805	726	0	0.01	0.0555	0.0222	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0.01	0.0777	FALSE	231	217	16	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ATP6--MT-CO1	5	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9370	28067	0	0	0.0555	0.0111	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0666	FALSE	183	104	9	328	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-CO1--MT-ND1	5	1	MT-CO1	1653	chrM:6556:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	28235	8865	0	0	0.0555	0.0111	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0666	FALSE	39	30	6	19	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-CO1--MT-ND1	5	1	MT-CO1	1699	chrM:6602:+	MT-ND1	6048	chrM:3812:+	INCL_NON_REF_SPLICE	YES	27643	11829	0	0	0.0555	0.0111	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0666	FALSE	39	30	6	19	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-CO1--MT-ND1	5	1	MT-CO1	1699	chrM:6602:+	MT-ND1	6056	chrM:3820:+	INCL_NON_REF_SPLICE	NO	27643	12159	0	0	0.0555	0.0111	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0666	FALSE	39	30	6	19	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND3--MT-ATP8	5	1	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	207	3	0.03	0.67	0.0555	0.0111	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.03	0.67	0.0666	FALSE	351	233	23	137	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	CTD-2008L17.1--RP11-456O19.2	4	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0444	0.0444	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.89	1	0.0888	FALSE	20	187	4	79	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-CO3--MT-ATP6	5	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0555	FALSE	189	492	56	216	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-CO3--MT-ATP6	5	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0555	FALSE	189	492	56	216	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	5	0	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0555	FALSE	231	204	14	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0555	FALSE	499	1288	110	792	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-TI--MT-ND1	5	0	MT-TI	1004	chrM:4266:+	MT-ND1	4978	chrM:4215:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	LOCAL_REARRANGEMENT:+:[1],MT-TI->chrM:4263-4331:+,mitochondrially_encoded_tRNA_isoleucine,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0555	FALSE	57	10	0	4	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	JSRP1--RPS28	4	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	3	0	0.67	1	0.0444	0.0222	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.67	1	0.0666	TRUE	0	1	0	84	1	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ATP6--MT-CO1	4	2	MT-ATP6	1126	chrM:8652:+	MT-CO1	5186	chrM:6408:+	INCL_NON_REF_SPLICE	YES	9386	25134	0	0	0.0444	0.0222	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0666	FALSE	183	104	9	328	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ATP6--MT-CO1	4	2	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	NO	9434	24878	0	0	0.0444	0.0222	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0666	FALSE	183	104	9	328	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ATP6--MT-CO1	4	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11214	28067	0	0	0.0444	0.0222	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0666	FALSE	183	104	9	328	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	4	2	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	19704	1447	0	0	0.0444	0.0222	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0666	FALSE	231	217	16	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	4	2	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21674	62	0	0.09	0.0444	0.0222	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0.09	0.0666	FALSE	231	217	16	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	APP--MT-ND2	4	1	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	1246	5331	0	0	0.0444	0.0111	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0555	FALSE	0	1	0	51	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ATP6--MT-CO1	3	5	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3220	28435	0	0	0.0333	0.0555	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0888	FALSE	183	104	9	328	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	3	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	19166	0	0	1	0.0333	0.0555	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	1	0.0888	FALSE	231	217	16	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	3	5	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18087	62	0	0.11	0.0333	0.0555	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0.11	0.0888	FALSE	231	217	16	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	3	5	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	NO	19666	0	0	1	0.0333	0.0555	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	1	0.0888	FALSE	231	217	16	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	3	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19166	62	0	0.1	0.0333	0.0444	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0.1	0.0777	FALSE	231	217	16	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	3	4	MT-ND4	1759	chrM:11518:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	19440	3	0	0.7	0.0333	0.0444	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0.7	0.0777	FALSE	231	217	16	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	WTAPP1--RUVBL1	4	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0444	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0444	TRUE	9	252	6	66	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	EEF2--MT-CO1	3	3	EEF2	9682	chr19:3976630:-	MT-CO1	13392	chrM:6037:+	INCL_NON_REF_SPLICE	YES	3049	7985	0	0	0.0333	0.0333	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0666	FALSE	0	0	0	2	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ATP6--MT-CO1	3	3	MT-ATP6	1189	chrM:8715:+	MT-CO1	5220	chrM:6442:+	INCL_NON_REF_SPLICE	YES	12388	25648	0	0	0.0333	0.0333	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0666	FALSE	183	104	9	328	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	3	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	21252	1	0	0.86	0.0333	0.0333	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0.86	0.0666	FALSE	231	217	16	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	3	3	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	19725	903	0	0.01	0.0333	0.0333	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0.01	0.0666	FALSE	231	217	16	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0.0333	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0666	FALSE	462	80	0	856	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	EEF2--MT-CO1	3	2	EEF2	9646	chr19:3976666:-	MT-CO1	13934	chrM:6579:+	INCL_NON_REF_SPLICE	YES	2919	28483	0	0	0.0333	0.0222	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0555	FALSE	0	0	0	2	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ATP6--MT-CO1	3	2	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	11985	17734	0	0	0.0333	0.0222	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0555	FALSE	183	104	9	328	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ATP6--MT-CO1	3	2	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	9510	24659	0	0	0.0333	0.0222	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0555	FALSE	183	104	9	328	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	11214	25597	0	0	0.0333	0.0222	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0	0	0.0555	FALSE	183	104	9	328	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-TA--MT-TC	3	2	MT-TA	1063	chrM:5593:-	MT-TC	4102	chrM:5794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0.0222	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0555	FALSE	462	80	0	856	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	3	1	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	5	0	0.44	1	0.0333	0.0111	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.44	1	0.0444	FALSE	344	821	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	3	1	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	5	0	0.44	1	0.0333	0.0111	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.44	1	0.0444	FALSE	344	821	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	3	0	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0333	FALSE	230	191	14	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ATP8	3	0	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0333	FALSE	231	216	16	283	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0333	FALSE	344	821	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND4--MT-ND4L	3	0	MT-ND4	1002	chrM:10761:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0333	FALSE	344	821	44	306	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0333	FALSE	499	1288	110	792	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	TBCA--SCAMP1	3	0	TBCA	2304	chr5:77072029:-	SCAMP1	15680	chr5:77684661:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0333	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Esophagus_-_Mucosa=1},TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A,SCAMP1->chr5:77656339-77776562:+,secretory_carrier_membrane_protein_1	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	RP11-680G10.1--GSE1	2	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	14	1	0.26	0.0222	0.0333	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.26	1	0.0555	TRUE	458	1351	185	561	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0.0111	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0333	FALSE	407	2205	196	549	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0.0111	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0333	FALSE	515	4851	409	746	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	AP003900.6--AC011718.2	2	0	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0222	TRUE	0	1	0	26	1	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	CHFR--CTBP1	2	0	CHFR	2239	chr12:133522207:-	CTBP1	38499	chr4:1232125:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	CPSF6--TARDBP	2	0	CPSF6	11046	chr12:69656342:+	TARDBP	21253	chr1:11073773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,TARDBP->TAR_DNA_binding_protein,chr1:11072414-11085796:+	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	DMTF1--EEF1D	2	0	DMTF1	2885	chr7:86783844:+	EEF1D	39798	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	DMTF1->Oncogene{Bushman},chr7:86781677-86825653:+,cyclin_D_binding_myb_like_transcription_factor_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	SNX5--DSTN	2	0	SNX5	1281	chr20:17949343:-	DSTN	24446	chr20:17581383:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5,DSTN->chr20:17550508-17590564:+,destrin,_actin_depolymerizing_factor	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0222	TRUE	0	0	0	2	0	TRUE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	TXNRD1--CHST11	2	0	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0222	TRUE	0	2	1	13	2	TRUE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	AP003900.6--AC011718.2	1	2	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0111	0.0222	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0333	TRUE	0	0	0	21	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	CTD-2008L17.1--RP11-456O19.2	1	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	1	0.75	0.75	0.0111	0.0222	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.75	0.75	0.0333	FALSE	33	240	4	98	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	TIMM23--RP11-464F9.1	1	2	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	294	3	0.01	0.5	0.0111	0.0222	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.01	0.5	0.0333	FALSE	5	8	0	33	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	ADAP1--GET4	1	1	ADAP1	9672	chr7:959605:-	GET4	25015	chr7:925693:+	ONLY_REF_SPLICE	YES	43	55	0.04	0.04	0.0111	0.0111	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=5;pct=0.06%;dist=Small_Intestine_-_Terminal_Ileum=1,Nerve_-_Tibial=1,Whole_Blood=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[1467],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.04	0.04	0.0222	TRUE	1	1	0	4	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	KIF21A--SLC38A1	1	1	KIF21A	1464	chr12:39836729:-	SLC38A1	50740	chr12:46602910:-	ONLY_REF_SPLICE	YES	51	330	0.04	0.01	0.0111	0.0111	KIF21A->chr12:39687030-39837192:-,kinesin_family_member_21A,SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.01	0.04	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	0	10	1	0.17	0.0111	0.0111	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.17	1	0.0222	FALSE	16	356	14	466	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0111	0.0111	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	1	1	0.0222	FALSE	192	492	57	212	0	FALSE	ACH-000961
ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	VWDE--PHF14	1	1	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	NO	3	61	0.4	0.03	0.0111	0.0111	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	ISHIKAWAHERAKLIO02ER_ENDOMETRIUM	0.03	0.4	0.0222	TRUE	0	6	0	17	2	TRUE	ACH-000961
HUH28_BILIARY_TRACT	FLNA--MYH9	877	3	FLNA	18618	chrX:153580048:-	MYH9	54988	chr22:36690200:-	INCL_NON_REF_SPLICE	YES	4993	1810	0.15	0.33	12.1527	0.0416	GTEx&tcga_normals:71/3694=1.92%,GTEx:1.22%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FLNA->chrX:153576892-153603006:-,filamin_A,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	HUH28_BILIARY_TRACT	0.15	0.33	12.1943	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	ADAMTS2--RP11-798K23.4	100	54	ADAMTS2	2636	chr5:178770768:-	RP11-798K23.4	32863	chr5:178930741:-	ONLY_REF_SPLICE	YES	127	0	0.55	1	1.3857	0.7483	GTEx_FI:{Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},ADAMTS2->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_2,chr5:178537852-178772431:-,RP11-798K23.4->chr5:178930323-178942580:-	HUH28_BILIARY_TRACT	0.55	1	2.134	TRUE	1	3	0	2	3	TRUE	ACH-000808
HUH28_BILIARY_TRACT	RASA2--ZBTB38	61	30	RASA2	1170	chr3:141206058:+	ZBTB38	33448	chr3:141087463:+	ONLY_REF_SPLICE	YES	6	3	0.94	0.97	0.8453	0.4157	YOSHIHARA_TCGA_num_samples[BLCA:1|LUAD:1],LOCAL_REARRANGEMENT:+:[37255],RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38	HUH28_BILIARY_TRACT	0.94	0.97	1.261	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	OR51S1--TP53I11	64	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8869	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HUH28_BILIARY_TRACT	1	1	0.8869	TRUE	402	216	10	229	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	TIMM23B--LINC00843	54	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7483	0.1801	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HUH28_BILIARY_TRACT	1	1	0.9284	TRUE	508	994	45	981	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	RP11-475J5.8--MT-ATP6	44	0	RP11-475J5.8	1074	chr5:99387547:-	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6097	0	RP11-475J5.8->chr5:99386837-99387620:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUH28_BILIARY_TRACT	1	1	0.6097	FALSE	0	0	0	4	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	AP000525.9--LA16c-60G3.6	31	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.4296	0.0139	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HUH28_BILIARY_TRACT	0.89	1	0.4435	TRUE	0	42	0	133	42	FALSE	ACH-000808
HUH28_BILIARY_TRACT	AL589743.1--RP11-536C10.17	30	2	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.4157	0.0277	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	HUH28_BILIARY_TRACT	0.89	1	0.4434	TRUE	0	33	0	45	33	FALSE	ACH-000808
HUH28_BILIARY_TRACT	SPAG9--MBTD1	23	14	SPAG9	3704	chr17:49133773:-	MBTD1	55721	chr17:49284366:-	ONLY_REF_SPLICE	YES	53	10	0.41	0.79	0.3187	0.194	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[56560],SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	HUH28_BILIARY_TRACT	0.41	0.79	0.5127	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	GFPT1--NFU1	23	13	GFPT1	8751	chr2:69583628:-	NFU1	39166	chr2:69633214:-	ONLY_REF_SPLICE	YES	73	49	0.33	0.42	0.3187	0.1801	YOSHIHARA_TCGA_num_samples[KIRC:1|LUSC:1],LOCAL_REARRANGEMENT:-:[8500],GFPT1->chr2:69546905-69614382:-,glutamine--fructose-6-phosphate_transaminase_1,NFU1->NFU1_iron-sulfur_cluster_scaffold,chr2:69622882-69664760:-	HUH28_BILIARY_TRACT	0.33	0.42	0.4988	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	TIMM23--RP11-464F9.1	24	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	151	3	0.15	0.9	0.3326	0.0277	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HUH28_BILIARY_TRACT	0.15	0.9	0.3603	TRUE	519	3926	326	965	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	PRR16--CTD-2334D19.1	16	8	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	49	0	0.33	1	0.2217	0.1109	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HUH28_BILIARY_TRACT	0.33	1	0.3326	FALSE	56	216	12	147	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	MYL9--MT-CO3	16	2	MYL9	4926	chr20:35178072:+	MT-CO3	8144	chrM:9268:+	INCL_NON_REF_SPLICE	YES	1634	0	0.01	1	0.2217	0.0277	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HUH28_BILIARY_TRACT	0.01	1	0.2494	FALSE	29	0	0	10	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	CTD-2337A12.1--CAST	16	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	36	1	0.32	0.2217	0.0139	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HUH28_BILIARY_TRACT	0.32	1	0.2356	TRUE	347	1186	183	220	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	RP1-34H18.1--NAV3	13	5	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1801	0.0693	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HUH28_BILIARY_TRACT	1	1	0.2494	TRUE	254	575	65	124	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	MT-ND6--MT-TE	13	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1801	0.0554	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH28_BILIARY_TRACT	1	1	0.2355	FALSE	499	1288	110	792	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	TTC37--CTNNA2	13	3	TTC37	7999	chr5:94876394:-	CTNNA2	76220	chr2:80620336:+	ONLY_REF_SPLICE	YES	47	0	0.25	1	0.1801	0.0416	TTC37->chr5:94799599-94890711:-,tetratricopeptide_repeat_domain_37,CTNNA2->catenin_alpha_2,chr2:79412357-80875905:+	HUH28_BILIARY_TRACT	0.25	1	0.2217	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	COL8A1--CMSS1	10	7	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	564	88	0.03	0.16	0.1386	0.097	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HUH28_BILIARY_TRACT	0.03	0.16	0.2356	FALSE	76	19	3	26	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	NRIP1--AF127936.7	11	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1524	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HUH28_BILIARY_TRACT	1	1	0.1524	FALSE	292	1546	117	613	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	PRR16--CTD-2334D19.1	8	10	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	19	0	0.49	1	0.1109	0.1386	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HUH28_BILIARY_TRACT	0.49	1	0.2495	FALSE	21	45	1	60	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	MT-ND6--MT-TE	7	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.097	0.1801	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH28_BILIARY_TRACT	0.95	1	0.2771	FALSE	499	1288	110	792	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	GFPT1--NFU1	8	8	GFPT1	8751	chr2:69583628:-	NFU1	40227	chr2:69627670:-	ONLY_REF_SPLICE	YES	73	46	0.18	0.26	0.1109	0.1109	YOSHIHARA_TCGA_num_samples[KIRC:1|LUSC:1],LOCAL_REARRANGEMENT:-:[8500],GFPT1->chr2:69546905-69614382:-,glutamine--fructose-6-phosphate_transaminase_1,NFU1->NFU1_iron-sulfur_cluster_scaffold,chr2:69622882-69664760:-	HUH28_BILIARY_TRACT	0.18	0.26	0.2218	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	MT-ND6--MT-TE	9	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1247	0.0554	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH28_BILIARY_TRACT	1	1	0.1801	FALSE	499	1288	110	792	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	C15orf57--CBX3	8	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	18	22	0.4	0.35	0.1109	0.0554	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HUH28_BILIARY_TRACT	0.35	0.4	0.1663	TRUE	267	562	48	632	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	MYL9--MT-CO3	8	2	MYL9	4581	chr20:35177727:+	MT-CO3	8123	chrM:9247:+	INCL_NON_REF_SPLICE	YES	1068	0	0.01	1	0.1109	0.0277	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HUH28_BILIARY_TRACT	0.01	1	0.1386	FALSE	29	0	0	10	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	TTC37--CTNNA2	7	6	TTC37	9098	chr5:94872747:-	CTNNA2	76220	chr2:80620336:+	ONLY_REF_SPLICE	YES	68	0	0.16	1	0.097	0.0831	TTC37->chr5:94799599-94890711:-,tetratricopeptide_repeat_domain_37,CTNNA2->catenin_alpha_2,chr2:79412357-80875905:+	HUH28_BILIARY_TRACT	0.16	1	0.1801	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	CHSY3--HSPA8P4	7	0	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.097	0	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	HUH28_BILIARY_TRACT	1	1	0.097	FALSE	89	26	1	44	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	MT-ND6--MT-TE	4	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0.1386	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH28_BILIARY_TRACT	1	1	0.194	FALSE	499	1288	110	792	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	MT-ND6--MT-TE	3	13	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0416	0.1801	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH28_BILIARY_TRACT	0.94	1	0.2217	FALSE	499	1288	110	792	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0831	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH28_BILIARY_TRACT	1	1	0.0831	FALSE	499	1288	110	792	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	RP11-96H19.1--RP11-446N19.1	5	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0693	0.0416	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUH28_BILIARY_TRACT	0.89	1	0.1109	FALSE	515	4851	409	746	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	COL12A1--COL1A1	5	1	COL12A1	51624	chr6:75812392:-	COL1A1	79137	chr17:48265282:-	INCL_NON_REF_SPLICE	NO	934	3035	0.01	0	0.0693	0.0139	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,HGNC_GENEFAM,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HUH28_BILIARY_TRACT	0	0.01	0.0832	FALSE	0	0	0	1	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	COL8A1--CMSS1	5	1	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	632	88	0.01	0.06	0.0693	0.0139	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HUH28_BILIARY_TRACT	0.01	0.06	0.0832	FALSE	38	10	2	29	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	MT-ATP6--MT-CO1	5	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7513	15679	0	0	0.0693	0.0139	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH28_BILIARY_TRACT	0	0	0.0832	FALSE	183	104	9	328	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	RNF152--RP11-879F14.1	4	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	8	0	0.38	1	0.0554	0.0139	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	HUH28_BILIARY_TRACT	0.38	1	0.0693	FALSE	275	472	65	43	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	RP11-254I22.1--CTD-2337A12.1	4	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0554	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HUH28_BILIARY_TRACT	1	1	0.0554	TRUE	4	2	0	28	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	GFPT1--NFU1	2	7	GFPT1	7689	chr2:69585461:-	NFU1	39166	chr2:69633214:-	ONLY_REF_SPLICE	YES	61	49	0.13	0.16	0.0277	0.097	YOSHIHARA_TCGA_num_samples[KIRC:1|LUSC:1],LOCAL_REARRANGEMENT:-:[8500],GFPT1->chr2:69546905-69614382:-,glutamine--fructose-6-phosphate_transaminase_1,NFU1->NFU1_iron-sulfur_cluster_scaffold,chr2:69622882-69664760:-	HUH28_BILIARY_TRACT	0.13	0.16	0.1247	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	RP11-476K15.1--CTD-2015H3.2	3	3	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0416	0.0416	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HUH28_BILIARY_TRACT	0.75	1	0.0832	FALSE	0	46	0	73	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	MT-ATP6--MT-CO1	3	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	8869	14822	0	0	0.0416	0.0277	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH28_BILIARY_TRACT	0	0	0.0693	FALSE	183	104	9	328	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	MT-ATP6--MT-CO1	3	2	MT-ATP6	1153	chrM:8679:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	8987	14979	0	0	0.0416	0.0277	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH28_BILIARY_TRACT	0	0	0.0693	FALSE	183	104	9	328	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	TTC37--CTNNA2	2	6	TTC37	9324	chr5:94872521:-	CTNNA2	76220	chr2:80620336:+	ONLY_REF_SPLICE	YES	41	0	0.16	1	0.0277	0.0831	TTC37->chr5:94799599-94890711:-,tetratricopeptide_repeat_domain_37,CTNNA2->catenin_alpha_2,chr2:79412357-80875905:+	HUH28_BILIARY_TRACT	0.16	1	0.1108	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	CTD-2008L17.1--RP11-456O19.2	3	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0.0139	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HUH28_BILIARY_TRACT	1	1	0.0555	FALSE	33	240	4	98	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	CTD-2337A12.1--CAST	3	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	79	1	0.05	0.0416	0.0139	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HUH28_BILIARY_TRACT	0.05	1	0.0555	TRUE	15	36	8	26	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	MT-ND6--MT-TE	3	1	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0.0139	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH28_BILIARY_TRACT	1	1	0.0555	FALSE	499	1288	110	792	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.57	0.0416	0.0139	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HUH28_BILIARY_TRACT	0.57	1	0.0555	TRUE	458	1351	185	561	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HUH28_BILIARY_TRACT	1	1	0.0416	TRUE	0	5	0	18	5	TRUE	ACH-000808
HUH28_BILIARY_TRACT	MT-ATP6--MT-CO1	3	0	MT-ATP6	1098	chrM:8624:+	MT-CO1	5381	chrM:6603:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUH28_BILIARY_TRACT	1	1	0.0416	FALSE	183	104	9	328	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	PRR16--CTD-2334D19.1	1	8	PRR16	6887	chr5:119954260:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	NO	59	0	0.13	1	0.0139	0.1109	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HUH28_BILIARY_TRACT	0.13	1	0.1248	FALSE	0	2	0	14	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	PRR16--CTD-2334D19.1	1	8	PRR16	5763	chr5:119952887:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	52	0	0.15	1	0.0139	0.1109	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HUH28_BILIARY_TRACT	0.15	1	0.1248	FALSE	0	3	0	8	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	CTD-2008L17.1--RP11-456O19.2	2	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0.0416	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HUH28_BILIARY_TRACT	1	1	0.0693	FALSE	20	187	4	79	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	RP11-120D5.1--MID1	2	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	7	0.8	0.36	0.0277	0.0277	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HUH28_BILIARY_TRACT	0.36	0.8	0.0554	FALSE	0	48	1	163	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	DSCR4--KCNJ6	2	1	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	4	12	0.43	0.2	0.0277	0.0139	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	HUH28_BILIARY_TRACT	0.2	0.43	0.0416	FALSE	0	24	0	27	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	HIF1A--CTD-2277K2.1	2	1	HIF1A	10588	chr14:62201003:+	CTD-2277K2.1	26514	chr14:62436850:+	ONLY_REF_SPLICE	YES	599	0	0	1	0.0277	0.0139	NEIGHBORS[63716],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,CTD-2277K2.1->chr14:62278692-62437037:+	HUH28_BILIARY_TRACT	0	1	0.0416	FALSE	0	0	0	1	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	RASA2--ZBTB38	2	1	RASA2	1170	chr3:141206058:+	ZBTB38	53331	chr3:141161231:+	ONLY_REF_SPLICE	YES	6	98	0.33	0.03	0.0277	0.0139	YOSHIHARA_TCGA_num_samples[BLCA:1|LUAD:1],LOCAL_REARRANGEMENT:+:[37255],RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38	HUH28_BILIARY_TRACT	0.03	0.33	0.0416	TRUE	0	1	0	1	1	FALSE	ACH-000808
HUH28_BILIARY_TRACT	RP11-319G9.5--WWOX	2	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	10	1	0.23	0.0277	0.0139	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	HUH28_BILIARY_TRACT	0.23	1	0.0416	FALSE	154	425	28	76	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	RP11-634B7.4--TRIM58	2	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	49	1	0.06	0.0277	0.0139	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	HUH28_BILIARY_TRACT	0.06	1	0.0416	TRUE	158	633	76	73	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	TXNRD1--CHST11	2	1	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	YES	1263	31	0	0.09	0.0277	0.0139	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	HUH28_BILIARY_TRACT	0	0.09	0.0416	FALSE	0	2	1	13	2	FALSE	ACH-000808
HUH28_BILIARY_TRACT	EPS15--NRD1	2	0	EPS15	23929	chr1:51868107:-	NRD1	45816	chr1:52299842:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:1=pct:0.3],Thyroid=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Caudate_(basal_ganglia)=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},EPS15->Oncogene{Bushman},chr1:51819935-51985000:-,epidermal_growth_factor_receptor_pathway_substrate_15,NRD1->chr1:52254863-52344477:-	HUH28_BILIARY_TRACT	1	1	0.0277	TRUE	1	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	GPC6--GPC5	2	0	GPC6	1775	chr13:93879869:+	GPC5	28531	chr13:93518535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	HGNC_GENEFAM,PROTCLUST,YOSHIHARA_TCGA_num_samples[HNSC:1|KIRC:1],GPC6->chr13:93879095-95059655:+,glypican_6,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	HUH28_BILIARY_TRACT	1	1	0.0277	TRUE	0	3	0	3	3	TRUE	ACH-000808
HUH28_BILIARY_TRACT	NAPG--VAPA	2	0	NAPG	1254	chr18:10526155:+	VAPA	28984	chr18:9950392:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	NAPG->NSF_attachment_protein_gamma,chr18:10525902-10552758:+,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	HUH28_BILIARY_TRACT	1	1	0.0277	TRUE	0	1	0	3	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HUH28_BILIARY_TRACT	1	1	0.0277	TRUE	145	312	16	51	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HUH28_BILIARY_TRACT	1	1	0.0277	FALSE	25	145	6	90	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HUH28_BILIARY_TRACT	1	1	0.0277	FALSE	125	705	46	456	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	RP5-864K19.4--DNAJB6	2	0	RP5-864K19.4	1240	chr1:39325911:+	DNAJB6	36180	chr7:157208710:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	RP5-864K19.4->chr1:39325672-39385068:+,DNAJB6->DnaJ_heat_shock_protein_family_(Hsp40)_member_B6,chr7:157128075-157210133:+	HUH28_BILIARY_TRACT	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	SPAG9--MBTD1	2	0	SPAG9	3704	chr17:49133773:-	MBTD1	56839	chr17:49281286:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[56560],SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	HUH28_BILIARY_TRACT	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	TGIF1--MYL12B	2	0	TGIF1	8043	chr18:3450503:+	MYL12B	20407	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Lung=1},TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	HUH28_BILIARY_TRACT	1	1	0.0277	TRUE	0	2	0	6	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	UBC--BRI3BP	2	0	UBC	2915	chr12:125399133:-	BRI3BP	10203	chr12:125497080:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	GTEx&tcga_normals:2/3694=0.05%,LOCAL_INVERSION:-:+:[76332],UBC->chr12:125396150-125401914:-,ubiquitin_C,BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+	HUH28_BILIARY_TRACT	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000808
HUH28_BILIARY_TRACT	FLNA--MYH9	1	3	FLNA	11992	chrX:153587852:-	MYH9	33936	chr22:36718566:-	ONLY_REF_SPLICE	NO	3771	1156	0	0	0.0139	0.0416	GTEx&tcga_normals:71/3694=1.92%,GTEx:1.22%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FLNA->chrX:153576892-153603006:-,filamin_A,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	HUH28_BILIARY_TRACT	0	0	0.0555	FALSE	0	0	0	1	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	RP11-120D5.1--MID1	1	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	3	7	0.57	0.36	0.0139	0.0416	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HUH28_BILIARY_TRACT	0.36	0.57	0.0555	FALSE	16	356	14	466	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	ATP11A--UBB	1	1	ATP11A	9020	chr13:113465040:+	UBB	47859	chr17:16285216:+	ONLY_REF_SPLICE	NO	51	135	0.04	0.01	0.0139	0.0139	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	HUH28_BILIARY_TRACT	0.01	0.04	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	EVA1A--TACR1	1	1	EVA1A	7973	chr2:75745182:-	TACR1	16733	chr2:75347894:-	ONLY_REF_SPLICE	NO	114	0	0.02	1	0.0139	0.0139	EVA1A->chr2:75696428-75796848:-,eva-1_homolog_A,_regulator_of_programmed_cell_death,TACR1->chr2:75273590-75426826:-,tachykinin_receptor_1	HUH28_BILIARY_TRACT	0.02	1	0.0278	TRUE	0	0	0	2	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	FBXL5--RP11-484O2.1	1	1	FBXL5	16339	chr4:15613889:-	RP11-484O2.1	22958	chr4:15364147:-	ONLY_REF_SPLICE	YES	60	0	0.03	1	0.0139	0.0139	FBXL5->F-box_and_leucine-rich_repeat_protein_5,chr4:15606162-15683302:-,RP11-484O2.1->chr4:15359765-15421656:-	HUH28_BILIARY_TRACT	0.03	1	0.0278	TRUE	1	6	0	5	2	TRUE	ACH-000808
HUH28_BILIARY_TRACT	HIF1A--CTD-2277K2.1	1	1	HIF1A	1327	chr14:62162557:+	CTD-2277K2.1	26514	chr14:62436850:+	ONLY_REF_SPLICE	YES	736	0	0	1	0.0139	0.0139	NEIGHBORS[63716],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,CTD-2277K2.1->chr14:62278692-62437037:+	HUH28_BILIARY_TRACT	0	1	0.0278	FALSE	0	0	0	4	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	8	0	0.2	1	0.0139	0.0139	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HUH28_BILIARY_TRACT	0.2	1	0.0278	FALSE	164	806	69	479	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	RASA2--ZBTB38	1	1	RASA2	1170	chr3:141206058:+	ZBTB38	46313	chr3:141122769:+	ONLY_REF_SPLICE	YES	6	74	0.25	0.03	0.0139	0.0139	YOSHIHARA_TCGA_num_samples[BLCA:1|LUAD:1],LOCAL_REARRANGEMENT:+:[37255],RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38	HUH28_BILIARY_TRACT	0.03	0.25	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	RNF152--RP11-879F14.1	1	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	NO	8	0	0.2	1	0.0139	0.0139	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	HUH28_BILIARY_TRACT	0.2	1	0.0278	FALSE	119	124	24	18	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	RP11-548L20.1--RP11-79E3.3	1	1	RP11-548L20.1	2265	chr4:34260709:-	RP11-79E3.3	12416	chr4:33949146:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0.0139	NEIGHBORS[81001],RP11-548L20.1->chr4:34122516-34271369:-,RP11-79E3.3->chr4:33777969-34041515:-	HUH28_BILIARY_TRACT	1	1	0.0278	FALSE	2	10	2	7	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	NO	0	17	1	0.11	0.0139	0.0139	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HUH28_BILIARY_TRACT	0.11	1	0.0278	TRUE	465	1949	224	605	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	SCAMP4--NT5DC2	1	1	SCAMP4	8857	chr19:1918282:+	NT5DC2	23651	chr3:52563350:-	ONLY_REF_SPLICE	NO	101	140	0.02	0.01	0.0139	0.0139	SCAMP4->Oncogene{Bushman},chr19:1905213-1926016:+,secretory_carrier_membrane_protein_4,NT5DC2->5'-nucleotidase_domain_containing_2,chr3:52558386-52569070:-	HUH28_BILIARY_TRACT	0.01	0.02	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	THBS1--FLNA	1	1	THBS1	13543	chr15:39885869:+	FLNA	39943	chrX:153580064:-	ONLY_REF_SPLICE	YES	1917	5473	0	0	0.0139	0.0139	GTEx&tcga_normals:8/3694=0.22%,GTEx:0.05%,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,FLNA->chrX:153576892-153603006:-,filamin_A	HUH28_BILIARY_TRACT	0	0	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000808
HUH28_BILIARY_TRACT	TLL1--CPE	1	1	TLL1	1816	chr4:166795225:+	CPE	41003	chr4:166385542:+	ONLY_REF_SPLICE	YES	23	472	0.08	0	0.0139	0.0139	GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},TLL1->chr4:166794410-167025047:+,tolloid_like_1,CPE->carboxypeptidase_E,chr4:166282346-166419472:+	HUH28_BILIARY_TRACT	0	0.08	0.0278	FALSE	2	0	0	1	0	FALSE	ACH-000808
NCIH650_LUNG	IFNGR2--IFNAR1	535	209	IFNGR2	4594	chr21:34787327:+	IFNAR1	21417	chr21:34721397:+	ONLY_REF_SPLICE	YES	140	89	0.84	0.89	6.836	2.6705	HGNC_GENEFAM,PROTCLUST,{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[43034],IFNGR2->Oncogene{Bushman},chr21:34775202-34851655:+,interferon_gamma_receptor_2_(interferon_gamma_transducer_1),IFNAR1->Oncogene{Bushman},chr21:34696734-34732168:+,interferon_alpha_and_beta_receptor_subunit_1	NCIH650_LUNG	0.84	0.89	9.5065	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	PLEKHM1--HMMR	153	71	PLEKHM1	1098	chr17:43568018:-	HMMR	29194	chr5:162890862:+	ONLY_REF_SPLICE	YES	24	4	0.9	0.98	1.955	0.9072	PLEKHM1->chr17:43513266-43568115:-,pleckstrin_homology_and_RUN_domain_containing_M1,HMMR->chr5:162887209-162918947:+,hyaluronan_mediated_motility_receptor	NCIH650_LUNG	0.9	0.98	2.8622	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	SBNO1--FAM9B	73	58	SBNO1	21821	chr12:123798167:-	FAM9B	40439	chrX:9130945:-	ONLY_REF_SPLICE	YES	353	2	0.27	0.98	0.9328	0.7411	SBNO1->Oncogene{Bushman},chr12:123773656-123849390:-,strawberry_notch_homolog_1_(Drosophila),FAM9B->chrX:8992273-9132680:-,family_with_sequence_similarity_9_member_B	NCIH650_LUNG	0.27	0.98	1.6739	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	PPT1--USP35	76	43	PPT1	6334	chr1:40555082:-	USP35	28764	chr11:77924692:+	ONLY_REF_SPLICE	YES	253	53	0.32	0.69	0.9711	0.5494	PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1,USP35->chr11:77899858-77925757:+,ubiquitin_specific_peptidase_35	NCIH650_LUNG	0.32	0.69	1.5205	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	MT-TA--MT-TC	59	11	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7539	0.1406	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH650_LUNG	1	1	0.8945	FALSE	462	80	0	856	0	FALSE	ACH-000945
NCIH650_LUNG	TIMM23B--LINC00843	53	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6772	0.23	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH650_LUNG	1	1	0.9072	TRUE	508	994	45	981	0	FALSE	ACH-000945
NCIH650_LUNG	PTPN12--DTX2P1	54	0	PTPN12	1371	chr7:77166962:+	DTX2P1	40648	chr7:76643229:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.69	0	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	NCIH650_LUNG	1	1	0.69	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	C15orf57--CBX3	39	32	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	30	26	0.7	0.73	0.4983	0.4089	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH650_LUNG	0.7	0.73	0.9072	TRUE	267	562	48	632	0	FALSE	ACH-000945
NCIH650_LUNG	PTPN12--DTX2P1	37	0	PTPN12	1371	chr7:77166962:+	DTX2P1	46311	chr7:76671294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4728	0	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	NCIH650_LUNG	1	1	0.4728	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	TIMM23--RP11-464F9.1	32	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	134	0	0.22	1	0.4089	0.0767	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH650_LUNG	0.22	1	0.4856	TRUE	519	3926	326	965	0	FALSE	ACH-000945
NCIH650_LUNG	NOTCH2--CPNE8	26	14	NOTCH2	1293	chr1:120611948:-	CPNE8	59113	chr12:39170103:-	ONLY_REF_SPLICE	YES	153	87	0.21	0.31	0.3322	0.1789	NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2,CPNE8->chr12:39040624-39301232:-,copine_8	NCIH650_LUNG	0.21	0.31	0.5111	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	TXLNA--KPNA6	18	5	TXLNA	9200	chr1:32659761:+	KPNA6	18885	chr1:32620189:+	ONLY_REF_SPLICE	YES	98	2	0.19	0.92	0.23	0.0639	LOCAL_REARRANGEMENT:+:[3118],TXLNA->chr1:32645287-32663886:+,taxilin_alpha,KPNA6->chr1:32573639-32642169:+,karyopherin_subunit_alpha_6	NCIH650_LUNG	0.19	0.92	0.2939	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	SEPT9--RP11-686D22.2	16	7	SEPT9	37702	chr17:75489158:+	RP11-686D22.2	46339	chr17:33671349:+	INCL_NON_REF_SPLICE	YES	127	0	0.15	1	0.2044	0.0894	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,RP11-686D22.2->chr17:33671250-33671583:+	NCIH650_LUNG	0.15	1	0.2938	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	CNTN1--SBNO1	16	3	CNTN1	19729	chr12:41353036:+	SBNO1	67415	chr12:123780597:-	ONLY_REF_SPLICE	YES	42	417	0.31	0.04	0.2044	0.0383	{Klijn_CCL:Lung=1},CNTN1->chr12:41086244-41466220:+,contactin_1,SBNO1->Oncogene{Bushman},chr12:123773656-123849390:-,strawberry_notch_homolog_1_(Drosophila)	NCIH650_LUNG	0.04	0.31	0.2427	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	NPM1P24--SET	15	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1917	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH650_LUNG	1	1	0.1917	TRUE	0	0	0	434	0	FALSE	ACH-000945
NCIH650_LUNG	C15orf57--CBX3	10	16	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	30	28	0.46	0.48	0.1278	0.2044	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH650_LUNG	0.46	0.48	0.3322	TRUE	267	562	48	632	0	FALSE	ACH-000945
NCIH650_LUNG	MT-ND6--MT-TE	11	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1406	0.0894	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH650_LUNG	0.95	1	0.23	FALSE	499	1288	110	792	0	FALSE	ACH-000945
NCIH650_LUNG	MT-TA--MT-TC	10	10	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1278	0.1278	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH650_LUNG	1	1	0.2556	FALSE	462	80	0	856	0	FALSE	ACH-000945
NCIH650_LUNG	UHRF1BP1L--DEPDC4	9	13	UHRF1BP1L	14855	chr12:100476794:-	DEPDC4	41347	chr12:100636347:-	ONLY_REF_SPLICE	YES	34	2	0.39	0.92	0.115	0.1661	LOCAL_REARRANGEMENT:-:[60821],UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-,DEPDC4->DEP_domain_containing_4,chr12:100597447-100660857:-	NCIH650_LUNG	0.39	0.92	0.2811	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	MT-CO3--MT-ATP6	4	25	MT-CO3	1322	chrM:9528:+	MT-ATP6	5185	chrM:8927:+	INCL_NON_REF_SPLICE	YES	2	30	0.94	0.49	0.0511	0.3194	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH650_LUNG	0.49	0.94	0.3705	FALSE	189	492	56	216	0	FALSE	ACH-000945
NCIH650_LUNG	MT-CO3--MT-ATP6	10	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1278	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH650_LUNG	1	1	0.1278	FALSE	189	492	56	216	0	FALSE	ACH-000945
NCIH650_LUNG	MT-ND6--MT-TE	10	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1278	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH650_LUNG	1	1	0.1278	FALSE	499	1288	110	792	0	FALSE	ACH-000945
NCIH650_LUNG	RP11-58C22.1--CTD-2336H13.2	9	0	RP11-58C22.1	2618	chr16:76669520:+	CTD-2336H13.2	5594	chr16:76770214:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.115	0	GTEx_FI:{Testis=[count:22=pct:21.0]},RP11-58C22.1->chr16:76587314-76669520:+,CTD-2336H13.2->chr16:76770239-76962066:+	NCIH650_LUNG	1	1	0.115	TRUE	5	3	0	6	0	FALSE	ACH-000945
NCIH650_LUNG	IFNGR2--IFNAR1	2	22	IFNGR2	1721	chr21:34775922:+	IFNAR1	21417	chr21:34721397:+	ONLY_REF_SPLICE	YES	50	89	0.32	0.21	0.0256	0.2811	HGNC_GENEFAM,PROTCLUST,{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[43034],IFNGR2->Oncogene{Bushman},chr21:34775202-34851655:+,interferon_gamma_receptor_2_(interferon_gamma_transducer_1),IFNAR1->Oncogene{Bushman},chr21:34696734-34732168:+,interferon_alpha_and_beta_receptor_subunit_1	NCIH650_LUNG	0.21	0.32	0.3067	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	UHRF1BP1L--DEPDC4	6	6	UHRF1BP1L	14855	chr12:100476794:-	DEPDC4	43274	chr12:100631895:-	ONLY_REF_SPLICE	YES	34	1	0.26	0.92	0.0767	0.0767	LOCAL_REARRANGEMENT:-:[60821],UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-,DEPDC4->DEP_domain_containing_4,chr12:100597447-100660857:-	NCIH650_LUNG	0.26	0.92	0.1534	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	TOP1--RP11-354I10.1	5	6	TOP1	2735	chr20:39690130:+	RP11-354I10.1	26999	chr6:9141373:-	ONLY_REF_SPLICE	YES	293	0	0.04	1	0.0639	0.0767	TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I,RP11-354I10.1->chr6:9124454-9162010:-	NCIH650_LUNG	0.04	1	0.1406	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	MT-ATP6--MT-CO1	6	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0767	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH650_LUNG	1	1	0.0767	FALSE	183	104	9	328	0	FALSE	ACH-000945
NCIH650_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0767	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH650_LUNG	1	1	0.0767	FALSE	499	1288	110	792	0	FALSE	ACH-000945
NCIH650_LUNG	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0767	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH650_LUNG	1	1	0.0767	FALSE	462	80	0	856	0	FALSE	ACH-000945
NCIH650_LUNG	MT-ND6--MT-TE	4	7	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0511	0.0894	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH650_LUNG	0.92	1	0.1405	FALSE	499	1288	110	792	0	FALSE	ACH-000945
NCIH650_LUNG	EEF2--MT2A	3	8	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	NO	2188	3	0.01	0.79	0.0383	0.1022	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	NCIH650_LUNG	0.01	0.79	0.1405	FALSE	1	0	0	19	0	FALSE	ACH-000945
NCIH650_LUNG	CALM3--MT-ND4L	4	3	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	896	0	0.01	1	0.0511	0.0383	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH650_LUNG	0.01	1	0.0894	FALSE	1	1	0	107	0	FALSE	ACH-000945
NCIH650_LUNG	EEF2--MT2A	3	5	EEF2	9846	chr19:3976466:-	MT2A	13683	chr16:56642535:+	INCL_NON_REF_SPLICE	YES	1959	2	0	0.8	0.0383	0.0639	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	NCIH650_LUNG	0	0.8	0.1022	TRUE	1	0	0	19	0	FALSE	ACH-000945
NCIH650_LUNG	MT-CO3--MT-ATP6	4	1	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0511	0.0128	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH650_LUNG	0.62	1	0.0639	FALSE	189	492	56	216	0	FALSE	ACH-000945
NCIH650_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH650_LUNG	1	1	0.0511	FALSE	183	104	9	328	0	FALSE	ACH-000945
NCIH650_LUNG	PTPN12--DTX2P1	4	0	PTPN12	1371	chr7:77166962:+	DTX2P1	47398	chr7:76672912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0511	0	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	NCIH650_LUNG	1	1	0.0511	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	PTPN12--DTX2P1	4	0	PTPN12	1371	chr7:77166962:+	DTX2P1	41735	chr7:76644989:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0511	0	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	NCIH650_LUNG	1	1	0.0511	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	RP11-344E13.3--UBBP4	2	8	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0.1022	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	NCIH650_LUNG	1	1	0.1278	TRUE	23	13	0	54	0	FALSE	ACH-000945
NCIH650_LUNG	TOP1--RP11-354I10.1	2	7	TOP1	3859	chr20:39704934:+	RP11-354I10.1	26999	chr6:9141373:-	ONLY_REF_SPLICE	YES	278	0	0.03	1	0.0256	0.0894	TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I,RP11-354I10.1->chr6:9124454-9162010:-	NCIH650_LUNG	0.03	1	0.115	TRUE	0	0	0	1	0	FALSE	ACH-000945
NCIH650_LUNG	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.45	0.0383	0.0256	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH650_LUNG	0.45	1	0.0639	TRUE	458	1351	185	561	0	FALSE	ACH-000945
NCIH650_LUNG	TMEM38B--FKTN	3	2	TMEM38B	8365	chr9:108510471:+	FKTN	28578	chr9:108382215:+	ONLY_REF_SPLICE	YES	94	20	0.05	0.2	0.0383	0.0256	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[53426],TMEM38B->chr9:108456825-108538893:+,transmembrane_protein_38B,FKTN->chr9:108320411-108403399:+,fukutin	NCIH650_LUNG	0.05	0.2	0.0639	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	TMEM38B--FKTN	1	9	TMEM38B	8365	chr9:108510471:+	FKTN	26314	chr9:108377559:+	ONLY_REF_SPLICE	YES	94	20	0.1	0.33	0.0128	0.115	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[53426],TMEM38B->chr9:108456825-108538893:+,transmembrane_protein_38B,FKTN->chr9:108320411-108403399:+,fukutin	NCIH650_LUNG	0.1	0.33	0.1278	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	WDR7--CTD-2008L17.1	3	1	WDR7	18978	chr18:54426184:+	CTD-2008L17.1	45827	chr18:53684959:+	ONLY_REF_SPLICE	YES	7	0	0.36	1	0.0383	0.0128	WDR7->WD_repeat_domain_7,chr18:54318574-54698828:+,CTD-2008L17.1->chr18:53560269-53690753:+	NCIH650_LUNG	0.36	1	0.0511	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0383	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH650_LUNG	1	1	0.0383	FALSE	189	492	56	216	0	FALSE	ACH-000945
NCIH650_LUNG	SETD8--CDK2AP1	3	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0383	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	NCIH650_LUNG	1	1	0.0383	TRUE	0	0	0	18	0	TRUE	ACH-000945
NCIH650_LUNG	NOTCH2--CPNE8	1	7	NOTCH2	1293	chr1:120611948:-	CPNE8	60177	chr12:39161540:-	ONLY_REF_SPLICE	NO	153	104	0.05	0.07	0.0128	0.0894	NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2,CPNE8->chr12:39040624-39301232:-,copine_8	NCIH650_LUNG	0.05	0.07	0.1022	TRUE	0	0	0	1	0	FALSE	ACH-000945
NCIH650_LUNG	UHRF1BP1L--DEPDC4	2	3	UHRF1BP1L	13736	chr12:100478254:-	DEPDC4	43274	chr12:100631895:-	ONLY_REF_SPLICE	YES	54	1	0.08	0.83	0.0256	0.0383	LOCAL_REARRANGEMENT:-:[60821],UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-,DEPDC4->DEP_domain_containing_4,chr12:100597447-100660857:-	NCIH650_LUNG	0.08	0.83	0.0639	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	PPP1R18--TRIM39	2	1	PPP1R18	1782	chr6:30654891:-	TRIM39	15796	chr6:30303522:+	ONLY_REF_SPLICE	YES	65	94	0.04	0.03	0.0256	0.0128	PPP1R18->chr6:30644166-30655672:-,protein_phosphatase_1_regulatory_subunit_18,TRIM39->chr6:30294256-30311506:+,tripartite_motif_containing_39	NCIH650_LUNG	0.03	0.04	0.0384	TRUE	0	0	0	1	0	FALSE	ACH-000945
NCIH650_LUNG	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0.0128	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH650_LUNG	1	1	0.0384	FALSE	416	2512	207	587	0	FALSE	ACH-000945
NCIH650_LUNG	TIMM23--RP11-464F9.1	2	1	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	215	0	0.01	1	0.0256	0.0128	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH650_LUNG	0.01	1	0.0384	FALSE	5	8	0	33	0	FALSE	ACH-000945
NCIH650_LUNG	KPNB1--UBB	2	0	KPNB1	23674	chr17:45758035:+	UBB	31881	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	KPNB1->chr17:45726842-45762871:+,karyopherin_subunit_beta_1,UBB->chr17:16284112-16286059:+,ubiquitin_B	NCIH650_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	MRPL48--AP1S1	2	0	MRPL48	1677	chr11:73499037:+	AP1S1	21643	chr7:100799875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48,AP1S1->adaptor_related_protein_complex_1_sigma_1_subunit,chr7:100797678-100804877:+	NCIH650_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	NFKB2--SLC6A16	2	0	NFKB2	3380	chr10:104156246:+	SLC6A16	18506	chr19:49797810:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	NFKB2->Oncogene{Bushman},chr10:104153867-104162281:+,nuclear_factor_kappa_B_subunit_2,SLC6A16->chr19:49792895-49828482:-,solute_carrier_family_6_member_16	NCIH650_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	NUDT1--HACE1	2	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	NCIH650_LUNG	1	1	0.0256	TRUE	1	20	0	20	17	FALSE	ACH-000945
NCIH650_LUNG	PTPN11--MAPKAPK5	2	0	PTPN11	1775	chr12:112856929:+	MAPKAPK5	36211	chr12:112321385:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	PTPN11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:112856155-112947717:+,protein_tyrosine_phosphatase,_non-receptor_type_11,MAPKAPK5->chr12:112279782-112334343:+,mitogen-activated_protein_kinase-activated_protein_kinase_5	NCIH650_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	PTPN12--DTX2P1	2	0	PTPN12	2571	chr7:77168162:+	DTX2P1	40648	chr7:76643229:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+	NCIH650_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	PTPN23--PICALM	2	0	PTPN23	1170	chr3:47422670:+	PICALM	17342	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	NCIH650_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH650_LUNG	1	1	0.0256	TRUE	465	1949	224	605	0	FALSE	ACH-000945
NCIH650_LUNG	TYMP--CTD-2020K17.1	2	0	TYMP	3469	chr22:50966017:-	CTD-2020K17.1	10074	chr17:43297821:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	TYMP->Oncogene{Bushman},chr22:50964181-50968485:-,thymidine_phosphorylase,CTD-2020K17.1->chr17:43268298-43299589:-	NCIH650_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	ZEB1--SMAD2	2	0	ZEB1	1798	chr10:31608221:+	SMAD2	34144	chr18:45423180:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,SMAD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_2,chr18:45357922-45457515:-	NCIH650_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	DCDC1--RP11-1L12.3	1	2	DCDC1	8746	chr11:31287054:-	RP11-1L12.3	69846	chr11:27068859:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0128	0.0256	DCDC1->chr11:30851916-31391357:-,doublecortin_domain_containing_1,RP11-1L12.3->chr11:27068733-27241660:-	NCIH650_LUNG	0.75	1	0.0384	TRUE	0	0	0	1	0	TRUE	ACH-000945
NCIH650_LUNG	NCOR2--UBC	1	2	NCOR2	12551	chr12:124922476:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	269	215	0.01	0.01	0.0128	0.0256	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH650_LUNG	0.01	0.01	0.0384	FALSE	5	9	1	3	0	FALSE	ACH-000945
NCIH650_LUNG	TMEM38B--FKTN	1	2	TMEM38B	8365	chr9:108510471:+	FKTN	29706	chr9:108397332:+	ONLY_REF_SPLICE	NO	94	8	0.03	0.27	0.0128	0.0256	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[53426],TMEM38B->chr9:108456825-108538893:+,transmembrane_protein_38B,FKTN->chr9:108320411-108403399:+,fukutin	NCIH650_LUNG	0.03	0.27	0.0384	TRUE	0	0	0	1	0	FALSE	ACH-000945
NCIH650_LUNG	IFNGR2--IFNAR1	1	1	IFNGR2	1721	chr21:34775922:+	IFNAR1	22870	chr21:34725064:+	ONLY_REF_SPLICE	YES	50	421	0.04	0	0.0128	0.0128	HGNC_GENEFAM,PROTCLUST,{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[43034],IFNGR2->Oncogene{Bushman},chr21:34775202-34851655:+,interferon_gamma_receptor_2_(interferon_gamma_transducer_1),IFNAR1->Oncogene{Bushman},chr21:34696734-34732168:+,interferon_alpha_and_beta_receptor_subunit_1	NCIH650_LUNG	0	0.04	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-000945
NCIH650_LUNG	RP11-46F15.2--TIMM44	1	1	RP11-46F15.2	1112	chr1:3541196:-	TIMM44	6869	chr19:8006082:-	ONLY_REF_SPLICE	NO	2	63	0.5	0.03	0.0128	0.0128	RP11-46F15.2->chr1:3539754-3541307:-,TIMM44->chr19:7991603-8008805:-,translocase_of_inner_mitochondrial_membrane_44	NCIH650_LUNG	0.03	0.5	0.0256	TRUE	0	0	0	1	0	FALSE	ACH-000945
NCIH650_LUNG	RPL11--SUV420H1	1	1	RPL11	3966	chr1:24021281:+	SUV420H1	22984	chr11:67926638:-	ONLY_REF_SPLICE	YES	1757	27	0	0.07	0.0128	0.0128	RPL11->chr1:24018269-24022915:+,ribosomal_protein_L11,SUV420H1->chr11:67922330-67981295:-	NCIH650_LUNG	0	0.07	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-000945
SNU1272_KIDNEY	MT-TA--MT-TN	96	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8415	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1272_KIDNEY	1	1	0.8415	FALSE	369	2501	205	193	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-TA--MT-TC	78	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6837	0.0614	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1272_KIDNEY	1	1	0.7451	FALSE	462	80	0	856	0	FALSE	ACH-000513
SNU1272_KIDNEY	PLCB4--RP11-340E6.1	54	37	PLCB4	2500	chr20:9076989:+	RP11-340E6.1	53814	chr3:141432134:+	ONLY_REF_SPLICE	YES	180	0	0.34	1	0.4733	0.3243	PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,RP11-340E6.1->chr3:141382041-141439915:+	SNU1272_KIDNEY	0.34	1	0.7976	TRUE	0	0	0	1	0	TRUE	ACH-000513
SNU1272_KIDNEY	PLCB4--RP11-340E6.1	56	27	PLCB4	1444	chr20:9049853:+	RP11-340E6.1	53814	chr3:141432134:+	ONLY_REF_SPLICE	YES	153	0	0.35	1	0.4908	0.2367	PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,RP11-340E6.1->chr3:141382041-141439915:+	SNU1272_KIDNEY	0.35	1	0.7275	TRUE	0	0	0	1	0	TRUE	ACH-000513
SNU1272_KIDNEY	TIMM23B--LINC00843	47	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.412	0.1139	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU1272_KIDNEY	1	1	0.5259	TRUE	508	994	45	981	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND6--MT-TE	47	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.412	0.0526	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1272_KIDNEY	1	1	0.4646	FALSE	499	1288	110	792	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND4--MT-ND4L	3	171	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	26	0	0.87	1	0.0263	1.4988	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1272_KIDNEY	0.87	1	1.5251	FALSE	344	827	44	306	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND4--MT-ND4L	3	168	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	18	0	0.9	1	0.0263	1.4725	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1272_KIDNEY	0.9	1	1.4988	FALSE	344	826	44	306	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-TA--MT-TN	18	94	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1578	0.8239	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1272_KIDNEY	1	1	0.9817	FALSE	369	2501	205	193	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND4--MT-ND4L	5	121	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	0	0.96	1	0.0438	1.0606	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1272_KIDNEY	0.96	1	1.1044	FALSE	344	821	44	306	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-TA--MT-TN	17	68	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.149	0.596	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1272_KIDNEY	1	1	0.745	FALSE	369	2501	205	193	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND4--MT-ND4L	3	122	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	NO	48	1	0.72	0.99	0.0263	1.0694	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1272_KIDNEY	0.72	0.99	1.0957	FALSE	344	827	44	306	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-CO1--TAGLN2	32	0	MT-CO1	1607	chrM:6510:+	TAGLN2	10731	chr1:159888436:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2805	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,TAGLN2->chr1:159887897-159895522:-,transgelin_2	SNU1272_KIDNEY	1	1	0.2805	FALSE	0	0	0	3	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND6--MT-TE	23	14	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2016	0.1227	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1272_KIDNEY	1	1	0.3243	FALSE	499	1288	110	792	0	FALSE	ACH-000513
SNU1272_KIDNEY	TIMM23--RP11-464F9.1	25	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	255	5	0.1	0.84	0.2191	0.0175	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU1272_KIDNEY	0.1	0.84	0.2366	TRUE	519	3926	326	965	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND4--MT-ND4L	13	47	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	11443	0	0.01	1	0.1139	0.412	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1272_KIDNEY	0.01	1	0.5259	FALSE	328	800	43	304	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-TA--MT-TN	3	86	MT-TA	1055	chrM:5601:-	MT-TN	3986	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0263	0.7538	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1272_KIDNEY	1	1	0.7801	FALSE	369	2501	205	193	0	FALSE	ACH-000513
SNU1272_KIDNEY	RP11-96H19.1--RP11-446N19.1	22	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	0	0.89	1	0.1928	0.0877	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1272_KIDNEY	0.89	1	0.2805	FALSE	515	4851	409	746	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-TA--MT-TN	23	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2016	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1272_KIDNEY	1	1	0.2016	FALSE	369	2501	205	193	0	FALSE	ACH-000513
SNU1272_KIDNEY	PTK2--AGO2	19	12	PTK2	25260	chr8:141799573:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	88	3	0.26	0.91	0.1665	0.1052	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	SNU1272_KIDNEY	0.26	0.91	0.2717	FALSE	0	0	0	1	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-TA--MT-TN	15	25	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1315	0.2191	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1272_KIDNEY	1	1	0.3506	FALSE	369	2501	205	193	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-TA--MT-TN	8	49	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0.4295	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1272_KIDNEY	1	1	0.4996	FALSE	369	2501	205	193	0	FALSE	ACH-000513
SNU1272_KIDNEY	ZNF654--HMGB2	20	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1753	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU1272_KIDNEY	1	1	0.1753	TRUE	0	0	0	518	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-TA--MT-TC	16	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1402	0.0614	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1272_KIDNEY	1	1	0.2016	FALSE	462	80	0	856	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND6--MT-TE	16	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1402	0.0526	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1272_KIDNEY	1	1	0.1928	FALSE	499	1288	110	792	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-TA--MT-TN	3	54	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0.4733	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1272_KIDNEY	1	1	0.4996	FALSE	369	2501	205	193	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND4--MT-ND4L	7	32	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	5360	0	0.01	1	0.0614	0.2805	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1272_KIDNEY	0.01	1	0.3419	FALSE	344	827	44	306	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-TA--MT-TN	4	43	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0.3769	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1272_KIDNEY	1	1	0.412	FALSE	369	2501	205	193	0	FALSE	ACH-000513
SNU1272_KIDNEY	RPS5--VIM	14	2	RPS5	5749	chr19:58905896:+	VIM	14348	chr10:17276710:+	INCL_NON_REF_SPLICE	YES	1602	16808	0.01	0	0.1227	0.0175	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,RPS5->chr19:58897767-58906173:+,ribosomal_protein_S5,VIM->chr10:17270258-17279592:+,vimentin	SNU1272_KIDNEY	0	0.01	0.1402	TRUE	0	0	0	1	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-TA--MT-TN	6	32	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0.2805	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1272_KIDNEY	1	1	0.3331	FALSE	369	2501	205	193	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND4--MT-ND4L	6	31	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	747	0	0.05	1	0.0526	0.2717	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1272_KIDNEY	0.05	1	0.3243	FALSE	344	827	44	306	0	FALSE	ACH-000513
SNU1272_KIDNEY	PLCB4--RP11-340E6.1	12	0	PLCB4	1141	chr20:9049550:+	RP11-340E6.1	53814	chr3:141432134:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1052	0	PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,RP11-340E6.1->chr3:141382041-141439915:+	SNU1272_KIDNEY	1	1	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-000513
SNU1272_KIDNEY	PTK2--AGO2	9	12	PTK2	25260	chr8:141799573:-	AGO2	67776	chr8:141616013:-	INCL_NON_REF_SPLICE	YES	88	0	0.19	1	0.0789	0.1052	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	SNU1272_KIDNEY	0.19	1	0.1841	FALSE	0	0	0	1	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND1--MT-TL1	3	32	MT-ND1	1155	chrM:3461:+	MT-TL1	4983	chrM:3256:+	INCL_NON_REF_SPLICE	YES	14	0	0.71	1	0.0263	0.2805	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SNU1272_KIDNEY	0.71	1	0.3068	FALSE	210	95	5	49	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND4--MT-ND4L	3	32	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12767	0	0	1	0.0263	0.2805	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1272_KIDNEY	0	1	0.3068	FALSE	343	822	44	305	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND4--MT-ND4L	11	0	MT-ND4	1003	chrM:10762:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0964	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1272_KIDNEY	1	1	0.0964	FALSE	344	821	44	306	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND6--MT-TE	6	20	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0.1753	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1272_KIDNEY	1	1	0.2279	FALSE	499	1288	110	792	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-TA--MT-TN	11	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0964	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1272_KIDNEY	1	1	0.0964	FALSE	369	2501	205	193	0	FALSE	ACH-000513
SNU1272_KIDNEY	NRIP1--AF127936.7	9	7	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.67	1	0.0789	0.0614	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1272_KIDNEY	0.67	1	0.1403	FALSE	292	1546	117	613	0	FALSE	ACH-000513
SNU1272_KIDNEY	C15orf57--CBX3	9	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	38	25	0.28	0.38	0.0789	0.0526	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1272_KIDNEY	0.28	0.38	0.1315	TRUE	267	562	48	632	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND6--MT-TE	5	21	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0.1841	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1272_KIDNEY	1	1	0.2279	FALSE	499	1288	110	792	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-TA--MT-TN	10	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0877	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1272_KIDNEY	1	1	0.0877	FALSE	369	2501	205	193	0	FALSE	ACH-000513
SNU1272_KIDNEY	CTB-161M19.4--GRAMD3	9	0	CTB-161M19.4	1085	chr5:118406501:-	GRAMD3	22465	chr5:125813384:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0789	0	CTB-161M19.4->chr5:118342042-118406585:-,GRAMD3->GRAM_domain_containing_3,chr5:125695824-125832186:+	SNU1272_KIDNEY	1	1	0.0789	TRUE	0	0	0	1	0	TRUE	ACH-000513
SNU1272_KIDNEY	MT-ND6--MT-TE	5	15	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	4	0	0.83	1	0.0438	0.1315	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1272_KIDNEY	0.83	1	0.1753	FALSE	499	1288	110	792	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND6--MT-TE	3	22	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0.1928	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1272_KIDNEY	1	1	0.2191	FALSE	499	1288	110	792	0	FALSE	ACH-000513
SNU1272_KIDNEY	RP11-123O10.4--GRIP1	8	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0701	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU1272_KIDNEY	1	1	0.0701	FALSE	416	2512	207	587	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND6--MT-TE	4	13	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0351	0.1139	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1272_KIDNEY	1	1	0.149	FALSE	499	1288	110	792	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-TA--MT-TC	7	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0614	0.0088	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1272_KIDNEY	1	1	0.0702	FALSE	462	80	0	856	0	FALSE	ACH-000513
SNU1272_KIDNEY	C15orf57--CBX3	6	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	37	26	0.21	0.28	0.0526	0.0351	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1272_KIDNEY	0.21	0.28	0.0877	TRUE	267	562	48	632	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND4--MT-ND4L	3	16	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	27	0	0.41	1	0.0263	0.1402	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1272_KIDNEY	0.41	1	0.1665	FALSE	344	826	44	306	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND4--MT-ND4L	3	16	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	47	0	0.29	1	0.0263	0.1402	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1272_KIDNEY	0.29	1	0.1665	FALSE	344	827	44	306	0	FALSE	ACH-000513
SNU1272_KIDNEY	CHSY3--HSPA8P4	6	2	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	8	0	0.5	1	0.0526	0.0175	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	SNU1272_KIDNEY	0.5	1	0.0701	FALSE	89	26	1	44	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND1--MT-TL1	4	9	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	NO	1	0	0.93	1	0.0351	0.0789	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SNU1272_KIDNEY	0.93	1	0.114	FALSE	210	95	5	49	0	FALSE	ACH-000513
SNU1272_KIDNEY	NPM1P24--SET	6	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	NO	60	843	0.1	0.01	0.0526	0.0088	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1272_KIDNEY	0.01	0.1	0.0614	FALSE	0	0	0	434	0	FALSE	ACH-000513
SNU1272_KIDNEY	PSAP--GAPDH	6	1	PSAP	8533	chr10:73581668:-	GAPDH	20191	chr12:6646841:+	INCL_NON_REF_SPLICE	YES	3944	15391	0	0	0.0526	0.0088	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	SNU1272_KIDNEY	0	0	0.0614	FALSE	0	0	0	8	0	FALSE	ACH-000513
SNU1272_KIDNEY	LIF--MT-CO1	6	0	LIF	3257	chr22:30639841:-	MT-CO1	10305	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	LIF->chr22:30636436-30642840:-,leukemia_inhibitory_factor,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1272_KIDNEY	1	1	0.0526	FALSE	0	0	0	8	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND4--MT-ND4L	5	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0.0175	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1272_KIDNEY	1	1	0.0613	FALSE	344	821	44	306	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-TA--MT-TC	4	6	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0.0526	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1272_KIDNEY	1	1	0.0877	FALSE	462	80	0	856	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1272_KIDNEY	1	1	0.0438	FALSE	499	1288	110	792	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ATP6--MT-CO1	4	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10554	28012	0	0	0.0351	0.0175	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1272_KIDNEY	0	0	0.0526	FALSE	183	104	9	328	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ATP6--MT-CO1	4	2	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10155	27827	0	0	0.0351	0.0175	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1272_KIDNEY	0	0	0.0526	FALSE	183	104	9	328	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ATP6--MT-CO1	4	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10481	27827	0	0	0.0351	0.0175	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1272_KIDNEY	0	0	0.0526	FALSE	183	104	9	328	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND6--MT-TE	3	6	MT-ND6	1261	chrM:14413:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0263	0.0526	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1272_KIDNEY	0.9	1	0.0789	FALSE	499	1288	110	792	0	FALSE	ACH-000513
SNU1272_KIDNEY	NRIP1--AF127936.7	2	10	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	39	0	0.24	1	0.0175	0.0877	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1272_KIDNEY	0.24	1	0.1052	FALSE	164	806	69	479	0	FALSE	ACH-000513
SNU1272_KIDNEY	AK2--MT-CO3	4	1	AK2	13236	chr1:33476397:-	MT-CO3	19408	chrM:9566:+	INCL_NON_REF_SPLICE	YES	41	17846	0.11	0	0.0351	0.0088	AK2->adenylate_kinase_2,chr1:33473585-33546597:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU1272_KIDNEY	0	0.11	0.0439	FALSE	0	0	0	2	0	FALSE	ACH-000513
SNU1272_KIDNEY	NRIP1--AF127936.7	2	9	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	32	0	0.26	1	0.0175	0.0789	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1272_KIDNEY	0.26	1	0.0964	FALSE	125	705	46	456	0	FALSE	ACH-000513
SNU1272_KIDNEY	RP11-96H19.1--RP11-446N19.1	1	13	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0088	0.1139	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1272_KIDNEY	1	1	0.1227	FALSE	467	2173	244	435	0	FALSE	ACH-000513
SNU1272_KIDNEY	DMXL1--RP11-517I3.1	3	4	DMXL1	42449	chr5:118539131:+	RP11-517I3.1	65265	chr5:125794764:-	ONLY_REF_SPLICE	YES	23	0	0.23	1	0.0263	0.0351	DMXL1->Dmx_like_1,chr5:118373467-118584833:+,RP11-517I3.1->chr5:125769197-125826063:-	SNU1272_KIDNEY	0.23	1	0.0614	TRUE	0	0	0	1	0	TRUE	ACH-000513
SNU1272_KIDNEY	MT-ATP6--MT-CO1	3	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	12558	0	0	1	0.0263	0.0351	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1272_KIDNEY	0	1	0.0614	FALSE	182	97	9	327	0	FALSE	ACH-000513
SNU1272_KIDNEY	PDZK1IP1--MT-ATP6	4	0	PDZK1IP1	5793	chr1:47649512:-	MT-ATP6	9089	chrM:8575:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	PDZK1IP1->PDZK1_interacting_protein_1,chr1:47649265-47656716:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1272_KIDNEY	1	1	0.0351	FALSE	0	0	0	1	0	FALSE	ACH-000513
SNU1272_KIDNEY	VIM--DPYSL3	4	0	VIM	2110	chr10:17271367:+	DPYSL3	16144	chr5:146833182:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	VIM->chr10:17270258-17279592:+,vimentin,DPYSL3->chr5:146770374-146889619:-,dihydropyrimidinase_like_3	SNU1272_KIDNEY	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000513
SNU1272_KIDNEY	MT-TA--MT-TC	3	3	MT-TA	1051	chrM:5605:-	MT-TC	4078	chrM:5818:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0263	0.0263	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1272_KIDNEY	1	1	0.0526	FALSE	462	80	0	856	0	FALSE	ACH-000513
SNU1272_KIDNEY	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	4	0	0.73	1	0.0088	0.0877	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1272_KIDNEY	0.73	1	0.0965	FALSE	407	2205	196	549	0	FALSE	ACH-000513
SNU1272_KIDNEY	RPS5--VIM	3	2	RPS5	5757	chr19:58905904:+	VIM	14356	chr10:17276718:+	INCL_NON_REF_SPLICE	YES	1314	16571	0	0	0.0263	0.0175	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,RPS5->chr19:58897767-58906173:+,ribosomal_protein_S5,VIM->chr10:17270258-17279592:+,vimentin	SNU1272_KIDNEY	0	0	0.0438	FALSE	0	0	0	1	0	FALSE	ACH-000513
SNU1272_KIDNEY	CTD-2337A12.1--CAST	3	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU1272_KIDNEY	1	1	0.0263	TRUE	347	1186	183	220	0	FALSE	ACH-000513
SNU1272_KIDNEY	JSRP1--RPS28	3	0	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SNU1272_KIDNEY	1	1	0.0263	TRUE	0	1	0	84	1	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1272_KIDNEY	1	1	0.0263	FALSE	344	821	44	306	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1272_KIDNEY	1	1	0.0263	FALSE	499	1288	110	792	0	FALSE	ACH-000513
SNU1272_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1272_KIDNEY	1	1	0.0263	FALSE	499	1288	110	792	0	FALSE	ACH-000513
SNU1272_KIDNEY	THBS1--ALDOA	3	0	THBS1	1096	chr15:39873375:+	ALDOA	31807	chr16:30080238:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	SNU1272_KIDNEY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000513
SNU1272_KIDNEY	VIM--MT-ATP6	3	0	VIM	2158	chr10:17271415:+	MT-ATP6	12743	chrM:9065:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	VIM->chr10:17270258-17279592:+,vimentin,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1272_KIDNEY	1	1	0.0263	FALSE	0	0	0	2	0	FALSE	ACH-000513
SNU1272_KIDNEY	NRIP1--AF127936.7	2	2	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	8	5	0.33	0.44	0.0175	0.0175	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1272_KIDNEY	0.33	0.44	0.035	FALSE	25	145	6	90	0	FALSE	ACH-000513
SNU1272_KIDNEY	CTD-2152M20.2--GOLPH3	2	1	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	1	62	0.75	0.05	0.0175	0.0088	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	SNU1272_KIDNEY	0.05	0.75	0.0263	TRUE	10	26	2	24	0	FALSE	ACH-000513
SNU1272_KIDNEY	LEPREL1--PRRC2C	2	0	LEPREL1	1235	chr3:189839992:-	PRRC2C	34340	chr1:171492360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	LEPREL1->chr3:189674517-189840226:-,PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C	SNU1272_KIDNEY	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000513
SNU1272_KIDNEY	ZNF250--DDB2	2	0	ZNF250	5808	chr8:146112225:-	DDB2	22825	chr11:47237887:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	ZNF250->chr8:146076632-146127553:-,zinc_finger_protein_250,DDB2->Oncogene{Bushman},chr11:47236493-47260767:+,damage_specific_DNA_binding_protein_2	SNU1272_KIDNEY	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000513
SNU1272_KIDNEY	ABLIM3--TCERG1	1	1	ABLIM3	2764	chr5:148563152:+	TCERG1	48521	chr5:145872483:+	ONLY_REF_SPLICE	YES	373	95	0.01	0.02	0.0088	0.0088	ABLIM3->actin_binding_LIM_protein_family_member_3,chr5:148521046-148640105:+,TCERG1->chr5:145826874-145891524:+,transcription_elongation_regulator_1	SNU1272_KIDNEY	0.01	0.02	0.0176	FALSE	0	0	0	1	0	FALSE	ACH-000513
SNU1272_KIDNEY	COL4A2--MPHOSPH8	1	1	COL4A2	33162	chr13:111137374:+	MPHOSPH8	64966	chr13:20245346:+	ONLY_REF_SPLICE	YES	930	43	0	0.04	0.0088	0.0088	COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2,MPHOSPH8->M-phase_phosphoprotein_8,chr13:20207788-20247599:+	SNU1272_KIDNEY	0	0.04	0.0176	FALSE	0	0	0	1	0	FALSE	ACH-000513
SNU1272_KIDNEY	TNFAIP8--RNF145	1	1	TNFAIP8	1216	chr5:118604602:+	RNF145	22073	chr5:158630664:-	ONLY_REF_SPLICE	YES	102	121	0.02	0.02	0.0088	0.0088	TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,RNF145->chr5:158584417-158637061:-,ring_finger_protein_145	SNU1272_KIDNEY	0.02	0.02	0.0176	TRUE	0	0	0	1	0	FALSE	ACH-000513
NCIH1355_LUNG	TFG--GPR128	160	49	TFG	5019	chr3:100438902:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	159	0	0.57	1	1.4406	0.4412	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	NCIH1355_LUNG	0.57	1	1.8818	TRUE	12	123	7	17	0	FALSE	ACH-000666
NCIH1355_LUNG	TIMM23B--LINC00843	95	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8553	0.1531	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1355_LUNG	1	1	1.0084	TRUE	508	994	45	981	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-TA--MT-TN	98	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8823	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1355_LUNG	1	1	0.8823	FALSE	369	2501	205	193	0	FALSE	ACH-000666
NCIH1355_LUNG	RP11-123O10.4--GRIP1	50	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4502	0.072	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1355_LUNG	1	1	0.5222	FALSE	416	2512	207	587	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-TA--MT-TC	50	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4502	0.018	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1355_LUNG	1	1	0.4682	FALSE	462	80	0	856	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND6--MT-TE	48	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4322	0.018	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1355_LUNG	1	1	0.4502	FALSE	499	1288	110	792	0	FALSE	ACH-000666
NCIH1355_LUNG	TIMM23--RP11-464F9.1	48	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	140	1	0.26	0.98	0.4322	0.009	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1355_LUNG	0.26	0.98	0.4412	TRUE	519	3926	326	965	0	FALSE	ACH-000666
NCIH1355_LUNG	AP003900.6--AP000345.1	37	4	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3331	0.036	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1355_LUNG	1	1	0.3691	TRUE	4	17	0	31	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ATP8	29	7	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2611	0.063	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1355_LUNG	0.97	1	0.3241	FALSE	43	37	8	105	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-TA--MT-TN	24	23	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2161	0.2071	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1355_LUNG	1	1	0.4232	FALSE	369	2501	205	193	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ATP8	25	6	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1900	5	0.02	0.86	0.2251	0.054	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1355_LUNG	0.02	0.86	0.2791	FALSE	43	37	8	105	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-TA--MT-TN	8	72	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.072	0.6482	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1355_LUNG	1	1	0.7202	FALSE	369	2501	205	193	0	FALSE	ACH-000666
NCIH1355_LUNG	ZNF654--HMGB2	26	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2341	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1355_LUNG	1	1	0.2341	TRUE	0	0	0	518	0	FALSE	ACH-000666
NCIH1355_LUNG	PDE4D--RP11-506H20.1	22	10	PDE4D	30827	chr5:58476421:-	RP11-506H20.1	59607	chr5:54575361:+	ONLY_REF_SPLICE	YES	87	0	0.27	1	0.1981	0.09	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-506H20.1->chr5:54529762-54591029:+	NCIH1355_LUNG	0.27	1	0.2881	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	MT-TA--MT-TN	9	54	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.081	0.4862	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1355_LUNG	1	1	0.5672	FALSE	369	2501	205	193	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-TA--MT-TN	11	40	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.099	0.3601	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1355_LUNG	1	1	0.4591	FALSE	369	2501	205	193	0	FALSE	ACH-000666
NCIH1355_LUNG	PLXDC1--TAF13	21	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1891	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH1355_LUNG	1	1	0.1891	TRUE	7	10	0	216	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND6--MT-TE	19	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1711	0.018	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1355_LUNG	1	1	0.1891	FALSE	499	1288	110	792	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-TA--MT-TN	19	1	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1711	0.009	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1355_LUNG	1	1	0.1801	FALSE	369	2501	205	193	0	FALSE	ACH-000666
NCIH1355_LUNG	SLC2A13--RP11-547C5.2	17	8	SLC2A13	4206	chr12:40422103:-	RP11-547C5.2	24456	chr12:43383650:-	ONLY_REF_SPLICE	YES	7	0	0.78	1	0.1531	0.072	SLC2A13->chr12:40148823-40499891:-,solute_carrier_family_2_member_13,RP11-547C5.2->chr12:43373057-43390289:-	NCIH1355_LUNG	0.78	1	0.2251	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	MT-ND6--MT-TE	14	19	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.126	0.1711	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1355_LUNG	0.97	1	0.2971	FALSE	499	1288	110	792	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ATP6--MT-CO2	17	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	19	2	0.53	0.91	0.1531	0.036	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1355_LUNG	0.53	0.91	0.1891	FALSE	59	21	0	114	0	FALSE	ACH-000666
NCIH1355_LUNG	NPM1P24--SET	18	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1621	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1355_LUNG	1	1	0.1621	TRUE	0	0	0	434	0	FALSE	ACH-000666
NCIH1355_LUNG	NDC80--HIF1A	17	0	NDC80	4483	chr18:2577356:+	HIF1A	39781	chr14:62211423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1531	0	GTEx_FI:{Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Cells_-_Transformed_fibroblasts=4,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Lung=1,Artery_-_Coronary=1,Esophagus_-_Muscularis=1},NDC80->NDC80_kinetochore_complex_component,chr18:2571510-2616634:+,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	NCIH1355_LUNG	1	1	0.1531	TRUE	2	27	1	8	0	FALSE	ACH-000666
NCIH1355_LUNG	YAF2--LRRK2	15	6	YAF2	10231	chr12:42604157:-	LRRK2	44295	chr12:40688647:+	ONLY_REF_SPLICE	YES	65	13	0.24	0.62	0.1351	0.054	YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2	NCIH1355_LUNG	0.24	0.62	0.1891	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	C7orf50--MAD1L1	14	6	C7orf50	3078	chr7:1166893:-	MAD1L1	45926	chr7:2020176:-	ONLY_REF_SPLICE	YES	92	28	0.18	0.42	0.126	0.054	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	NCIH1355_LUNG	0.18	0.42	0.18	TRUE	0	1	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	HSP90AB1--MT-RNR2	15	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1654	0	0.01	1	0.1351	0.009	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1355_LUNG	0.01	1	0.1441	FALSE	13	9	0	364	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ATP8	14	4	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3387	33	0.01	0.35	0.126	0.036	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1355_LUNG	0.01	0.35	0.162	FALSE	43	37	8	105	0	FALSE	ACH-000666
NCIH1355_LUNG	FBXO4--NIPBL	14	3	FBXO4	6477	chr5:41934410:+	NIPBL	60913	chr5:37063892:+	ONLY_REF_SPLICE	YES	8	54	0.68	0.24	0.126	0.027	FBXO4->F-box_protein_4,chr5:41925356-41941845:+,NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+	NCIH1355_LUNG	0.24	0.68	0.153	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ND4	8	23	MT-ND5	2721	chrM:14057:+	MT-ND4	5917	chrM:10864:+	INCL_NON_REF_SPLICE	YES	4	295	0.89	0.1	0.072	0.2071	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1355_LUNG	0.1	0.89	0.2791	FALSE	29	25	1	23	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ATP6--MT-CO2	12	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	19	2	0.44	0.88	0.108	0.027	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1355_LUNG	0.44	0.88	0.135	FALSE	59	21	0	114	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-TA--MT-TN	4	35	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0.3151	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1355_LUNG	1	1	0.3511	FALSE	369	2501	205	193	0	FALSE	ACH-000666
NCIH1355_LUNG	TSPAN5--DNAJB14	12	2	TSPAN5	1484	chr4:99579297:-	DNAJB14	21440	chr4:100851778:-	ONLY_REF_SPLICE	YES	18	98	0.44	0.12	0.108	0.018	TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,DNAJB14->DnaJ_heat_shock_protein_family_(Hsp40)_member_B14,chr4:100817405-100867883:-	NCIH1355_LUNG	0.12	0.44	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	MT-ATP6--MT-CO2	11	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	19	2	0.44	0.88	0.099	0.036	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1355_LUNG	0.44	0.88	0.135	FALSE	59	21	0	114	0	FALSE	ACH-000666
NCIH1355_LUNG	AP003900.6--AP000345.1	10	7	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	3	0	0.85	1	0.09	0.063	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1355_LUNG	0.85	1	0.153	TRUE	0	8	0	37	1	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND6--MT-TE	5	27	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.045	0.2431	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1355_LUNG	0.97	1	0.2881	FALSE	499	1288	110	792	0	FALSE	ACH-000666
NCIH1355_LUNG	CLTC--RPS6KB1	10	6	CLTC	15918	chr17:57746301:+	RPS6KB1	41184	chr17:57987923:+	ONLY_REF_SPLICE	YES	183	44	0.08	0.27	0.09	0.054	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	NCIH1355_LUNG	0.08	0.27	0.144	TRUE	0	1	0	2	0	TRUE	ACH-000666
NCIH1355_LUNG	MT-TA--MT-TC	11	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.099	0.018	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1355_LUNG	1	1	0.117	FALSE	462	80	0	856	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ND4	6	17	MT-ND5	2707	chrM:14043:+	MT-ND4	6119	chrM:11066:+	INCL_NON_REF_SPLICE	YES	107	8839	0.18	0	0.054	0.1531	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1355_LUNG	0	0.18	0.2071	FALSE	47	27	1	24	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ND4	7	11	MT-ND5	2228	chrM:13564:+	MT-ND4	6033	chrM:10980:+	INCL_NON_REF_SPLICE	NO	2057	5835	0.01	0	0.063	0.099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1355_LUNG	0	0.01	0.162	FALSE	46	29	1	23	0	FALSE	ACH-000666
NCIH1355_LUNG	PDE4D--RP11-506H20.1	8	6	PDE4D	30827	chr5:58476421:-	RP11-506H20.1	60724	chr5:54578856:+	ONLY_REF_SPLICE	YES	87	6	0.14	0.7	0.072	0.054	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-506H20.1->chr5:54529762-54591029:+	NCIH1355_LUNG	0.14	0.7	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	YAF2--LRRK2	8	6	YAF2	3318	chr12:42629416:-	LRRK2	44295	chr12:40688647:+	ONLY_REF_SPLICE	YES	68	13	0.17	0.52	0.072	0.054	YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2	NCIH1355_LUNG	0.17	0.52	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	CCSER1--MMRN1	9	1	CCSER1	1297	chr4:91048982:+	MMRN1	52159	chr4:90872756:+	ONLY_REF_SPLICE	YES	9	1	0.53	0.91	0.081	0.009	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	NCIH1355_LUNG	0.53	0.91	0.09	TRUE	0	1	0	1	1	TRUE	ACH-000666
NCIH1355_LUNG	YAF2--LRRK2	8	5	YAF2	1751	chr12:42631401:-	LRRK2	44295	chr12:40688647:+	ONLY_REF_SPLICE	YES	72	13	0.15	0.5	0.072	0.045	YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2	NCIH1355_LUNG	0.15	0.5	0.117	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	FTH1--ACTG1	9	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.081	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH1355_LUNG	1	1	0.081	TRUE	0	0	0	64	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND6--MT-TE	4	19	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0.1711	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1355_LUNG	1	1	0.2071	FALSE	499	1288	110	792	0	FALSE	ACH-000666
NCIH1355_LUNG	HSP90AB1--MT-RNR2	8	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1678	0	0.01	1	0.072	0.009	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1355_LUNG	0.01	1	0.081	FALSE	13	9	0	364	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ATP8	6	9	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0.081	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1355_LUNG	1	1	0.135	FALSE	43	37	8	105	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ND4	4	16	MT-ND5	2730	chrM:14066:+	MT-ND4	6214	chrM:11161:+	INCL_NON_REF_SPLICE	NO	1	9695	0.95	0	0.036	0.1441	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1355_LUNG	0	0.95	0.1801	FALSE	47	27	1	24	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.072	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1355_LUNG	1	1	0.072	FALSE	462	80	0	856	0	FALSE	ACH-000666
NCIH1355_LUNG	RCC1--GNAS	8	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.072	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1355_LUNG	1	1	0.072	TRUE	0	3	0	13	2	TRUE	ACH-000666
NCIH1355_LUNG	SLC2A13--RP11-547C5.2	7	4	SLC2A13	4206	chr12:40422103:-	RP11-547C5.2	25557	chr12:43373203:-	ONLY_REF_SPLICE	YES	7	2	0.61	0.85	0.063	0.036	SLC2A13->chr12:40148823-40499891:-,solute_carrier_family_2_member_13,RP11-547C5.2->chr12:43373057-43390289:-	NCIH1355_LUNG	0.61	0.85	0.099	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	GRB14--COBLL1	7	3	GRB14	3001	chr2:165476197:-	COBLL1	29056	chr2:165600385:-	ONLY_REF_SPLICE	YES	10	4	0.5	0.71	0.063	0.027	LOCAL_REARRANGEMENT:-:[31776],GRB14->chr2:165349322-165478358:-,growth_factor_receptor_bound_protein_14,COBLL1->chr2:165510134-165700189:-,cordon-bleu_WH2_repeat_protein_like_1	NCIH1355_LUNG	0.5	0.71	0.09	TRUE	0	1	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	ACTN4--MT-CO1	7	1	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	701	11671	0.01	0	0.063	0.009	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1355_LUNG	0	0.01	0.072	FALSE	0	0	0	30	0	FALSE	ACH-000666
NCIH1355_LUNG	AP003900.6--AP000345.1	6	5	AP003900.6	2187	chr21:11172043:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.054	0.045	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1355_LUNG	0.79	1	0.099	TRUE	1	2	0	16	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ND4	4	12	MT-ND5	2455	chrM:13791:+	MT-ND4	6098	chrM:11045:+	INCL_NON_REF_SPLICE	YES	1557	7594	0.01	0	0.036	0.108	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1355_LUNG	0	0.01	0.144	FALSE	47	28	1	23	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-TA--MT-TN	7	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.063	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1355_LUNG	1	1	0.063	FALSE	369	2501	205	193	0	FALSE	ACH-000666
NCIH1355_LUNG	NPM1P24--SET	7	0	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.063	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1355_LUNG	1	1	0.063	TRUE	0	0	0	434	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ND4	3	15	MT-ND5	2455	chrM:13791:+	MT-ND4	5931	chrM:10878:+	INCL_NON_REF_SPLICE	YES	1557	1240	0.01	0.01	0.027	0.1351	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1355_LUNG	0.01	0.01	0.1621	FALSE	29	26	1	23	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ATP6--MT-CO2	6	2	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	24	3	0.25	0.73	0.054	0.018	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1355_LUNG	0.25	0.73	0.072	FALSE	59	21	0	114	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-TA--MT-TN	3	14	MT-TA	1071	chrM:5585:-	MT-TN	4113	chrM:5686:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.027	0.126	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1355_LUNG	1	1	0.153	FALSE	369	2501	205	193	0	FALSE	ACH-000666
NCIH1355_LUNG	RP11-120D5.1--MID1	6	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	76	0.89	0.1	0.054	0.018	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1355_LUNG	0.1	0.89	0.072	FALSE	16	356	14	466	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ND4	5	5	MT-ND5	1408	chrM:12744:+	MT-ND4	5805	chrM:10752:+	INCL_NON_REF_SPLICE	YES	146	0	0.06	1	0.045	0.045	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1355_LUNG	0.06	1	0.09	FALSE	16	23	0	20	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-TA--MT-TN	6	1	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0.009	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1355_LUNG	1	1	0.063	FALSE	369	2501	205	193	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-TL1--MT-RNR2	4	9	MT-TL1	1104	chrM:3333:+	MT-RNR2	5603	chrM:3198:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.036	0.081	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1355_LUNG	1	1	0.117	FALSE	7	521	16	32	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-TA--MT-TN	6	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1355_LUNG	1	1	0.054	FALSE	369	2501	205	193	0	FALSE	ACH-000666
NCIH1355_LUNG	RP11-123O10.4--GRIP1	5	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.045	0.036	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1355_LUNG	1	1	0.081	FALSE	93	270	15	244	0	FALSE	ACH-000666
NCIH1355_LUNG	RP11-59N23.1--CMAS	6	0	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.054	0	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH1355_LUNG	1	1	0.054	TRUE	21	102	17	28	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ATP8	4	7	MT-ND5	2394	chrM:13730:+	MT-ATP8	5872	chrM:8425:+	INCL_NON_REF_SPLICE	YES	1408	0	0.01	1	0.036	0.063	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1355_LUNG	0.01	1	0.099	FALSE	43	37	8	105	0	FALSE	ACH-000666
NCIH1355_LUNG	CLU--ID3	5	2	CLU	12697	chr8:27455621:-	ID3	18356	chr1:23884814:-	INCL_NON_REF_SPLICE	YES	404	1433	0.02	0	0.045	0.018	CLU->Oncogene{Bushman},chr8:27454434-27472548:-,clusterin,ID3->Oncogene{Bushman},chr1:23884409-23886285:-,inhibitor_of_DNA_binding_3,_HLH_protein	NCIH1355_LUNG	0	0.02	0.063	FALSE	0	0	0	1	0	FALSE	ACH-000666
NCIH1355_LUNG	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.045	0.009	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1355_LUNG	1	1	0.054	FALSE	292	1546	117	613	0	FALSE	ACH-000666
NCIH1355_LUNG	RP11-96H19.1--RP11-446N19.1	5	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.045	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1355_LUNG	1	1	0.045	FALSE	407	2205	196	549	0	FALSE	ACH-000666
NCIH1355_LUNG	RP11-96H19.1--RP11-446N19.1	5	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.045	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1355_LUNG	1	1	0.045	FALSE	515	4851	409	746	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ATP8	3	7	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	6	5	0.62	0.67	0.027	0.063	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1355_LUNG	0.62	0.67	0.09	FALSE	43	37	8	105	0	FALSE	ACH-000666
NCIH1355_LUNG	NRIP1--AF127936.7	4	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	36	0	0.16	1	0.036	0.027	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1355_LUNG	0.16	1	0.063	FALSE	164	806	69	479	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ATP6--MT-CO2	4	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	14	2	0.3	0.75	0.036	0.018	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1355_LUNG	0.3	0.75	0.054	FALSE	59	21	0	114	0	FALSE	ACH-000666
NCIH1355_LUNG	NRIP1--AF127936.7	4	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	21	0	0.22	1	0.036	0.018	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1355_LUNG	0.22	1	0.054	FALSE	125	705	46	456	0	FALSE	ACH-000666
NCIH1355_LUNG	YAF2--LRRK2	3	6	YAF2	12641	chr12:42592938:-	LRRK2	44295	chr12:40688647:+	ONLY_REF_SPLICE	YES	65	13	0.12	0.41	0.027	0.054	YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2	NCIH1355_LUNG	0.12	0.41	0.081	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	CLU--ID3	4	1	CLU	12735	chr8:27455583:-	ID3	18394	chr1:23884776:-	INCL_NON_REF_SPLICE	YES	57	1189	0.08	0	0.036	0.009	CLU->Oncogene{Bushman},chr8:27454434-27472548:-,clusterin,ID3->Oncogene{Bushman},chr1:23884409-23886285:-,inhibitor_of_DNA_binding_3,_HLH_protein	NCIH1355_LUNG	0	0.08	0.045	FALSE	0	0	0	1	0	FALSE	ACH-000666
NCIH1355_LUNG	CLU--MT-CO1	4	1	CLU	9661	chr8:27461859:-	MT-CO1	17874	chrM:6893:+	INCL_NON_REF_SPLICE	YES	4680	11948	0	0	0.036	0.009	CLU->Oncogene{Bushman},chr8:27454434-27472548:-,clusterin,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1355_LUNG	0	0	0.045	FALSE	0	1	0	1	0	FALSE	ACH-000666
NCIH1355_LUNG	IGFBP4--NPM1	4	1	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	695	0	0.01	1	0.036	0.009	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	NCIH1355_LUNG	0.01	1	0.045	FALSE	0	0	0	38	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ATP8	4	1	MT-ND5	1570	chrM:12906:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2417	5	0	0.5	0.036	0.009	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1355_LUNG	0	0.5	0.045	FALSE	42	36	7	104	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ATP8	3	5	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	2221	0	0	1	0.027	0.045	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1355_LUNG	0	1	0.072	FALSE	43	37	8	105	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-TA--MT-TN	4	1	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0.009	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1355_LUNG	1	1	0.045	FALSE	369	2501	205	193	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ATP6--MT-CO2	3	4	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	19	2	0.27	0.78	0.027	0.036	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1355_LUNG	0.27	0.78	0.063	FALSE	59	21	0	114	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ND4	3	4	MT-ND5	2730	chrM:14066:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	1	4695	0.88	0	0.027	0.036	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1355_LUNG	0	0.88	0.063	FALSE	47	27	1	24	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ND4	4	0	MT-ND5	2455	chrM:13791:+	MT-ND4	7040	chrM:11987:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1355_LUNG	1	1	0.036	FALSE	45	28	1	23	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1355_LUNG	1	1	0.036	FALSE	499	1288	110	792	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-TA--MT-TN	4	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1355_LUNG	1	1	0.036	FALSE	369	2501	205	193	0	FALSE	ACH-000666
NCIH1355_LUNG	PTP4A1--KRT18	4	0	PTP4A1	3910	chr6:64282494:+	KRT18	15883	chr12:53342902:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1,KRT18->chr12:53342655-53346685:+,keratin_18	NCIH1355_LUNG	1	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ATP8	3	3	MT-ND5	2262	chrM:13598:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	1697	750	0	0.01	0.027	0.027	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1355_LUNG	0	0.01	0.054	FALSE	43	37	8	105	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ATP6--MT-CO2	3	1	MT-ATP6	1169	chrM:8695:+	MT-CO2	4981	chrM:7885:+	INCL_NON_REF_SPLICE	YES	19	3	0.17	0.57	0.027	0.009	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1355_LUNG	0.17	0.57	0.036	FALSE	59	21	0	114	0	FALSE	ACH-000666
NCIH1355_LUNG	PDE4D--RP11-506H20.1	3	1	PDE4D	26151	chr5:58571164:-	RP11-506H20.1	59607	chr5:54575361:+	ONLY_REF_SPLICE	YES	98	0	0.04	1	0.027	0.009	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-506H20.1->chr5:54529762-54591029:+	NCIH1355_LUNG	0.04	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	ARMC4P1--RP11-748L13.2	3	0	ARMC4P1	5853	chr10:27577753:+	RP11-748L13.2	13614	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	LOCAL_INVERSION:+:-:[42533],ARMC4P1->armadillo_repeat_containing_4_pseudogene_1,chr10:27547691-27577753:+,RP11-748L13.2->chr10:27620286-27630181:-	NCIH1355_LUNG	1	1	0.027	TRUE	1	34	11	8	34	TRUE	ACH-000666
NCIH1355_LUNG	FTH1--ACTG1	3	0	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH1355_LUNG	1	1	0.027	TRUE	0	0	0	64	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ATP6--MT-CO2	3	0	MT-ATP6	1142	chrM:8668:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.027	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1355_LUNG	1	1	0.027	FALSE	59	21	0	114	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-CO2--MYEOV	3	0	MT-CO2	1237	chrM:7822:+	MYEOV	7149	chr11:69064069:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.027	0	MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed	NCIH1355_LUNG	1	1	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND5--MT-ND4	3	0	MT-ND5	1337	chrM:12673:+	MT-ND4	7077	chrM:12024:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.027	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1355_LUNG	1	1	0.027	FALSE	12	16	1	17	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.027	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1355_LUNG	1	1	0.027	FALSE	499	1288	110	792	0	FALSE	ACH-000666
NCIH1355_LUNG	MT-TA--MT-TN	3	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.027	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1355_LUNG	1	1	0.027	FALSE	369	2501	205	193	0	FALSE	ACH-000666
NCIH1355_LUNG	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.027	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1355_LUNG	1	1	0.027	TRUE	0	0	0	434	0	FALSE	ACH-000666
NCIH1355_LUNG	TSPAN5--DNAJB14	2	2	TSPAN5	3554	chr4:99495608:-	DNAJB14	21440	chr4:100851778:-	ONLY_REF_SPLICE	NO	23	98	0.15	0.04	0.018	0.018	TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,DNAJB14->DnaJ_heat_shock_protein_family_(Hsp40)_member_B14,chr4:100817405-100867883:-	NCIH1355_LUNG	0.04	0.15	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.018	0.009	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1355_LUNG	0.75	1	0.027	FALSE	467	2173	244	435	0	FALSE	ACH-000666
NCIH1355_LUNG	CD44--PDHX	2	0	CD44	1501	chr11:35160917:+	PDHX	40918	chr11:35006117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	NCIH1355_LUNG	1	1	0.018	TRUE	0	2	0	7	0	TRUE	ACH-000666
NCIH1355_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1355_LUNG	1	1	0.018	FALSE	25	145	6	90	0	FALSE	ACH-000666
NCIH1355_LUNG	RNASEH2B--FAM124A	2	0	RNASEH2B	1463	chr13:51484276:+	FAM124A	26560	chr13:51854586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	RNASEH2B->chr13:51483814-51544592:+,ribonuclease_H2_subunit_B,FAM124A->chr13:51796503-51858377:+,family_with_sequence_similarity_124_member_A	NCIH1355_LUNG	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	SLK--MTMR2	2	0	SLK	1695	chr10:105727653:+	MTMR2	28131	chr11:95647476:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	SLK->STE20_like_kinase,chr10:105726959-105788991:+,MTMR2->chr11:95566046-95658479:-,myotubularin_related_protein_2	NCIH1355_LUNG	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	TMBIM4--SLC4A7	2	0	TMBIM4	1218	chr12:66563635:-	SLC4A7	27815	chr3:27465643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	TMBIM4->chr12:66517697-66563765:-,chr12:66517709-66563852:-,transmembrane_BAX_inhibitor_motif_containing_4,SLC4A7->chr3:27414214-27525911:-,solute_carrier_family_4_member_7	NCIH1355_LUNG	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	TSPAN5--DNAJB14	2	0	TSPAN5	1484	chr4:99579297:-	DNAJB14	31569	chr4:100830053:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,DNAJB14->DnaJ_heat_shock_protein_family_(Hsp40)_member_B14,chr4:100817405-100867883:-	NCIH1355_LUNG	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000666
NCIH1355_LUNG	C7orf50--MAD1L1	1	2	C7orf50	3078	chr7:1166893:-	MAD1L1	47015	chr7:1997354:-	ONLY_REF_SPLICE	NO	92	33	0.03	0.08	0.009	0.018	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	NCIH1355_LUNG	0.03	0.08	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000666
NCIH1355_LUNG	CD44--PDHX	1	1	CD44	5271	chr11:35208447:+	PDHX	33796	chr11:34969053:+	ONLY_REF_SPLICE	YES	608	117	0	0.02	0.009	0.009	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	NCIH1355_LUNG	0	0.02	0.018	FALSE	0	0	0	2	0	FALSE	ACH-000666
NCIH1355_LUNG	CYP24A1--PGBD2	1	1	CYP24A1	10936	chr20:52773708:-	PGBD2	20114	chr1:249211478:+	ONLY_REF_SPLICE	YES	995	13	0	0.13	0.009	0.009	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	NCIH1355_LUNG	0	0.13	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000666
NCIH1355_LUNG	PDE4D--RP11-506H20.1	1	1	PDE4D	26151	chr5:58571164:-	RP11-506H20.1	60724	chr5:54578856:+	ONLY_REF_SPLICE	NO	98	6	0.02	0.25	0.009	0.009	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-506H20.1->chr5:54529762-54591029:+	NCIH1355_LUNG	0.02	0.25	0.018	TRUE	0	0	0	1	0	FALSE	ACH-000666
NCIH1355_LUNG	PDE4D--RP11-506H20.1	1	1	PDE4D	30827	chr5:58476421:-	RP11-506H20.1	61466	chr5:54579598:+	ONLY_REF_SPLICE	YES	87	5	0.02	0.29	0.009	0.009	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-506H20.1->chr5:54529762-54591029:+	NCIH1355_LUNG	0.02	0.29	0.018	TRUE	0	0	0	1	0	FALSE	ACH-000666
NCIH1355_LUNG	ZNF326--LRRC8D	1	1	ZNF326	1162	chr1:90460832:+	LRRC8D	32062	chr1:90398626:+	ONLY_REF_SPLICE	YES	75	42	0.03	0.05	0.009	0.009	LOCAL_REARRANGEMENT:+:[58501],ZNF326->chr1:90460671-90501090:+,zinc_finger_protein_326,LRRC8D->chr1:90286573-90402170:+,leucine-rich_repeat_containing_8_family_member_D	NCIH1355_LUNG	0.03	0.05	0.018	TRUE	0	0	0	1	0	FALSE	ACH-000666
KNS62_LUNG	MT-ND6--MT-TE	108	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6539	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	1	1	1.6539	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	CTD-2547E10.2--GNPTG	84	62	CTD-2547E10.2	1617	chr16:21531149:-	GNPTG	37322	chr16:1411744:+	ONLY_REF_SPLICE	YES	15	46	0.91	0.76	1.2863	0.9494	CTD-2547E10.2->chr16:21458004-21531765:-,GNPTG->N-acetylglucosamine-1-phosphate_transferase_gamma_subunit,chr16:1401924-1413352:+	KNS62_LUNG	0.76	0.91	2.2357	TRUE	0	0	0	1	0	TRUE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	90	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	7	0	0.94	1	1.3782	0.2297	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	0.94	1	1.6079	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	TIMM23B--LINC00843	66	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0107	0.3063	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KNS62_LUNG	1	1	1.317	TRUE	508	994	45	981	0	FALSE	ACH-000858
KNS62_LUNG	RP11-475J5.8--MT-ATP6	58	0	RP11-475J5.8	1074	chr5:99387547:-	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8882	0	RP11-475J5.8->chr5:99386837-99387620:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KNS62_LUNG	1	1	0.8882	FALSE	0	0	0	4	0	FALSE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	52	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7963	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	1	1	0.7963	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	TIMM23--RP11-464F9.1	39	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	226	0	0.15	1	0.5972	0.0306	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KNS62_LUNG	0.15	1	0.6278	TRUE	519	3926	326	965	0	FALSE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	28	17	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	7	0	0.87	1	0.4288	0.2603	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	0.87	1	0.6891	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	19	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.291	0.1531	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	1	1	0.4441	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	CTD-2547E10.2--GNPTG	4	67	CTD-2547E10.2	1617	chr16:21531149:-	GNPTG	34484	chr16:1407701:+	ONLY_REF_SPLICE	YES	15	45	0.83	0.61	0.0613	1.026	CTD-2547E10.2->chr16:21458004-21531765:-,GNPTG->N-acetylglucosamine-1-phosphate_transferase_gamma_subunit,chr16:1401924-1413352:+	KNS62_LUNG	0.61	0.83	1.0873	TRUE	0	0	0	1	0	TRUE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	14	17	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	8	0	0.79	1	0.2144	0.2603	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	0.79	1	0.4747	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	HSD17B4--TNFAIP8	10	19	HSD17B4	26739	chr5:118867099:+	TNFAIP8	44947	chr5:118728511:+	ONLY_REF_SPLICE	YES	116	28	0.2	0.51	0.1531	0.291	LOCAL_REARRANGEMENT:+:[52755],HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	KNS62_LUNG	0.2	0.51	0.4441	TRUE	0	0	0	1	0	TRUE	ACH-000858
KNS62_LUNG	MT-TA--MT-TC	14	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2144	0.0306	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KNS62_LUNG	1	1	0.245	FALSE	462	80	0	856	0	FALSE	ACH-000858
KNS62_LUNG	HSD17B4--TNFAIP8	10	16	HSD17B4	25480	chr5:118865675:+	TNFAIP8	44947	chr5:118728511:+	ONLY_REF_SPLICE	YES	135	28	0.16	0.48	0.1531	0.245	LOCAL_REARRANGEMENT:+:[52755],HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	KNS62_LUNG	0.16	0.48	0.3981	TRUE	0	0	0	1	0	TRUE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	9	17	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	7	0	0.79	1	0.1378	0.2603	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	0.79	1	0.3981	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	C15orf57--CBX3	9	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	39	25	0.39	0.5	0.1378	0.245	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KNS62_LUNG	0.39	0.5	0.3828	TRUE	267	562	48	632	0	FALSE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	10	12	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1531	0.1838	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	1	1	0.3369	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	8	17	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	9	0	0.74	1	0.1225	0.2603	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	0.74	1	0.3828	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	CTD-2547E10.2--GNPTG	2	38	CTD-2547E10.2	1617	chr16:21531149:-	GNPTG	37451	chr16:1411873:+	ONLY_REF_SPLICE	YES	15	62	0.73	0.39	0.0306	0.5819	CTD-2547E10.2->chr16:21458004-21531765:-,GNPTG->N-acetylglucosamine-1-phosphate_transferase_gamma_subunit,chr16:1401924-1413352:+	KNS62_LUNG	0.39	0.73	0.6125	TRUE	0	0	0	1	0	TRUE	ACH-000858
KNS62_LUNG	C15orf57--CBX3	8	13	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	37	26	0.36	0.45	0.1225	0.1991	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KNS62_LUNG	0.36	0.45	0.3216	TRUE	267	562	48	632	0	FALSE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	4	27	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.0613	0.4135	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	0.89	1	0.4748	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	7	15	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	7	0	0.76	1	0.1072	0.2297	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	0.76	1	0.3369	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	6	15	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0919	0.2297	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	0.88	1	0.3216	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	3	26	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0459	0.3982	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	0.97	1	0.4441	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	RP11-475J5.8--MT-ATP6	8	1	RP11-475J5.8	1088	chr5:99387533:-	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	10701	1	0	0.1225	0.0153	RP11-475J5.8->chr5:99386837-99387620:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KNS62_LUNG	0	1	0.1378	FALSE	0	0	0	4	0	FALSE	ACH-000858
KNS62_LUNG	RP11-114H23.1--RP11-114H23.2	6	7	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0919	0.1072	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	KNS62_LUNG	0.93	1	0.1991	FALSE	81	155	12	160	0	FALSE	ACH-000858
KNS62_LUNG	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1072	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KNS62_LUNG	1	1	0.1072	FALSE	462	80	0	856	0	FALSE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	4	10	MT-ND6	1198	chrM:14476:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	7	0	0.67	1	0.0613	0.1531	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	0.67	1	0.2144	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0919	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	1	1	0.0919	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0919	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	1	1	0.0919	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	LPP--RP11-430L16.1	4	7	LPP	5388	chr3:187943315:+	RP11-430L16.1	55201	chr3:187864354:+	ONLY_REF_SPLICE	YES	5	0	0.69	1	0.0613	0.1072	LOCAL_REARRANGEMENT:+:[6264],LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,RP11-430L16.1->chr3:187824884-187864808:+	KNS62_LUNG	0.69	1	0.1685	TRUE	0	6	0	1	6	TRUE	ACH-000858
KNS62_LUNG	RP11-353N4.6--RP11-403I13.8	5	2	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	32	1	0.18	0.88	0.0766	0.0306	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	KNS62_LUNG	0.18	0.88	0.1072	TRUE	6	2	0	8	0	FALSE	ACH-000858
KNS62_LUNG	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0766	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KNS62_LUNG	1	1	0.0766	FALSE	292	1546	117	613	0	FALSE	ACH-000858
KNS62_LUNG	MT-TA--MT-TC	4	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0613	0.0306	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KNS62_LUNG	1	1	0.0919	FALSE	462	80	0	856	0	FALSE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4584	chrM:14684:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0613	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	1	1	0.0613	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0.0459	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KNS62_LUNG	1	1	0.0918	FALSE	462	80	0	856	0	FALSE	ACH-000858
KNS62_LUNG	MT-TW--MT-ND2	3	3	MT-TW	1005	chrM:5516:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	64	1	0.09	0.0459	0.0459	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KNS62_LUNG	0.09	1	0.0918	FALSE	14	0	0	19	0	FALSE	ACH-000858
KNS62_LUNG	MT-TW--MT-ND2	3	3	MT-TW	1004	chrM:5515:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	64	1	0.09	0.0459	0.0459	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	KNS62_LUNG	0.09	1	0.0918	FALSE	14	0	0	19	0	FALSE	ACH-000858
KNS62_LUNG	RP11-353N4.6--RP11-403I13.8	3	2	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	31	1	0.14	0.83	0.0459	0.0306	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	KNS62_LUNG	0.14	0.83	0.0765	TRUE	6	2	0	8	0	FALSE	ACH-000858
KNS62_LUNG	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0459	0.0306	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KNS62_LUNG	1	1	0.0765	FALSE	515	4851	409	746	0	FALSE	ACH-000858
KNS62_LUNG	LPP--RP11-430L16.1	3	1	LPP	2859	chr3:187926106:+	RP11-430L16.1	55201	chr3:187864354:+	ONLY_REF_SPLICE	YES	6	0	0.4	1	0.0459	0.0153	LOCAL_REARRANGEMENT:+:[6264],LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,RP11-430L16.1->chr3:187824884-187864808:+	KNS62_LUNG	0.4	1	0.0612	TRUE	0	2	0	1	2	TRUE	ACH-000858
KNS62_LUNG	MT-TA--MT-TC	3	1	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0.0153	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KNS62_LUNG	1	1	0.0612	FALSE	462	80	0	856	0	FALSE	ACH-000858
KNS62_LUNG	NRIP1--AF127936.7	3	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.36	1	0.0459	0.0153	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KNS62_LUNG	0.36	1	0.0612	FALSE	164	806	69	479	0	FALSE	ACH-000858
KNS62_LUNG	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	5	1	0.44	0.0459	0.0153	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KNS62_LUNG	0.44	1	0.0612	TRUE	465	1949	224	605	0	FALSE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	1	1	0.0459	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	1	1	0.0459	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0459	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS62_LUNG	1	1	0.0459	FALSE	499	1288	110	792	0	FALSE	ACH-000858
KNS62_LUNG	GNPTG--MKL2	2	3	GNPTG	1384	chr16:1402307:+	MKL2	11404	chr16:14173147:+	ONLY_REF_SPLICE	YES	45	0	0.1	1	0.0306	0.0459	GNPTG->N-acetylglucosamine-1-phosphate_transferase_gamma_subunit,chr16:1401924-1413352:+,MKL2->MKL1/myocardin_like_2,chr16:14165178-14360630:+	KNS62_LUNG	0.1	1	0.0765	TRUE	0	0	0	1	0	TRUE	ACH-000858
KNS62_LUNG	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0.0153	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KNS62_LUNG	1	1	0.0459	FALSE	416	2512	207	587	0	FALSE	ACH-000858
KNS62_LUNG	RP11-59N23.1--CMAS	2	0	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	KNS62_LUNG	1	1	0.0306	TRUE	21	102	17	28	0	FALSE	ACH-000858
KNS62_LUNG	SQLE--ZNF572	2	0	SQLE	5009	chr8:126017947:+	ZNF572	17961	chr8:125987848:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	LOCAL_REARRANGEMENT:+:[19108],SQLE->chr8:126010739-126034525:+,squalene_epoxidase,ZNF572->chr8:125985540-125991631:+,zinc_finger_protein_572	KNS62_LUNG	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000858
KNS62_LUNG	XRCC4--PPP2R2A	2	0	XRCC4	3492	chr5:82407022:+	PPP2R2A	23382	chr8:26211984:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	XRCC4->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_4,chr5:82373317-82649606:+,PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha	KNS62_LUNG	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000858
KNS62_LUNG	RP11-353N4.6--RP11-403I13.8	1	2	RP11-353N4.6	7562	chr1:149591237:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	NO	31	1	0.09	0.75	0.0153	0.0306	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	KNS62_LUNG	0.09	0.75	0.0459	TRUE	0	0	0	3	0	FALSE	ACH-000858
KNS62_LUNG	FAT2--SPARC	1	1	FAT2	12371	chr5:150928856:-	SPARC	47072	chr5:151051255:-	ONLY_REF_SPLICE	NO	15	3	0.12	0.4	0.0153	0.0153	LOCAL_REARRANGEMENT:-:[92152],FAT2->FAT_atypical_cadherin_2,Oncogene{Bushman},chr5:150883654-150948505:-,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	KNS62_LUNG	0.12	0.4	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000858
KNS62_LUNG	NARS2--HNRNPC	1	1	NARS2	14198	chr11:78154707:-	HNRNPC	24132	chr14:21731495:-	ONLY_REF_SPLICE	YES	46	1084	0.04	0	0.0153	0.0153	NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	KNS62_LUNG	0	0.04	0.0306	FALSE	0	0	0	1	0	FALSE	ACH-000858
SNU1077_ENDOMETRIUM	MT-TA--MT-TC	159	22	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3493	0.1867	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1077_ENDOMETRIUM	1	1	1.536	FALSE	462	80	0	856	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TN	156	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3238	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1077_ENDOMETRIUM	1	1	1.3238	FALSE	369	2501	205	193	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	PRKRIP1--GRB2	120	24	PRKRIP1	4162	chr7:102016769:+	GRB2	20763	chr17:73328878:-	ONLY_REF_SPLICE	YES	90	161	0.62	0.47	1.0183	0.2037	PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,GRB2->Oncogene{Bushman},chr17:73314157-73401790:-,growth_factor_receptor_bound_protein_2	SNU1077_ENDOMETRIUM	0.47	0.62	1.222	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	TIMM23B--LINC00843	110	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9335	0.1952	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU1077_ENDOMETRIUM	1	1	1.1287	TRUE	508	994	45	981	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	47	177	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	11367	1	0.02	1	0.3988	1.502	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.02	1	1.9008	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	19	260	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	44	0	0.86	1	0.1612	2.2064	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.86	1	2.3676	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	5	285	MT-ND4	1937	chrM:11696:+	MT-ND4L	5386	chrM:10477:+	INCL_NON_REF_SPLICE	YES	25939	0	0.01	1	0.0424	2.4185	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.01	1	2.4609	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	3	288	MT-ND4	1967	chrM:11726:+	MT-ND4L	5384	chrM:10475:+	INCL_NON_REF_SPLICE	YES	25610	0	0.01	1	0.0255	2.444	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.01	1	2.4695	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	5	275	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	979	0	0.22	1	0.0424	2.3337	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.22	1	2.3761	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	8	262	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	34	0	0.89	1	0.0679	2.2233	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.89	1	2.2912	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	8	256	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	22	0	0.92	1	0.0679	2.1724	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.92	1	2.2403	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	6	263	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	47	0	0.85	1	0.0509	2.2318	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.85	1	2.2827	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	TIMM23--RP11-464F9.1	71	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	187	2	0.28	0.97	0.6025	0.0255	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU1077_ENDOMETRIUM	0.28	0.97	0.628	TRUE	519	3926	326	965	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	5	266	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	45	0	0.86	1	0.0424	2.2573	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.86	1	2.2997	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	3	272	MT-ND4	1754	chrM:11513:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	NO	9311	0	0.03	1	0.0255	2.3082	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.03	1	2.3337	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	3	272	MT-ND4	1738	chrM:11497:+	MT-ND4L	5511	chrM:10602:+	INCL_NON_REF_SPLICE	YES	8200	1	0.03	1	0.0255	2.3082	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.03	1	2.3337	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	4	266	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	45	0	0.86	1	0.0339	2.2573	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.86	1	2.2912	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	4	261	MT-ND4	1220	chrM:10979:+	MT-ND4L	5536	chrM:10627:+	INCL_NON_REF_SPLICE	YES	46	1	0.85	1	0.0339	2.2149	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.85	1	2.2488	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	4	259	MT-ND4	1112	chrM:10871:+	MT-ND4L	5464	chrM:10555:+	INCL_NON_REF_SPLICE	YES	22	0	0.92	1	0.0339	2.1979	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.92	1	2.2318	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	4	258	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	23	1	0.92	1	0.0339	2.1894	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.92	1	2.2233	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TN	37	126	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.314	1.0692	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1077_ENDOMETRIUM	1	1	1.3832	FALSE	369	2501	205	193	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	3	261	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	32	1	0.89	1	0.0255	2.2149	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.89	1	2.2404	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	3	260	MT-ND4	1148	chrM:10907:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	NO	31	1	0.89	1	0.0255	2.2064	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.89	1	2.2319	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	3	257	MT-ND4	1110	chrM:10869:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	22	0	0.92	1	0.0255	2.1809	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.92	1	2.2064	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	60	29	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	49	0	0.64	1	0.5092	0.2461	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.64	1	0.7553	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	14	200	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	12	0	0.95	1	0.1188	1.6972	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.95	1	1.816	FALSE	344	821	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	8	182	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	22	1	0.9	0.99	0.0679	1.5445	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.9	0.99	1.6124	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	SPTAN1--DNM1	43	37	SPTAN1	8210	chr9:131340524:+	DNM1	49607	chr9:130980510:+	ONLY_REF_SPLICE	YES	111	11	0.42	0.88	0.3649	0.314	SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1,DNM1->chr9:130965658-131017527:+,dynamin_1	SNU1077_ENDOMETRIUM	0.42	0.88	0.6789	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	36	50	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	20736	0	0	1	0.3055	0.4243	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0	1	0.7298	FALSE	328	800	43	304	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	4	173	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	23	1	0.89	0.99	0.0339	1.4681	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.89	0.99	1.502	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	4	172	MT-ND4	1466	chrM:11225:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	748	1	0.19	0.99	0.0339	1.4596	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.19	0.99	1.4935	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	5	163	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	121	1	0.58	0.99	0.0424	1.3832	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.58	0.99	1.4256	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TN	33	41	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.28	0.3479	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1077_ENDOMETRIUM	1	1	0.6279	FALSE	369	2501	205	193	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TC	36	20	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3055	0.1697	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1077_ENDOMETRIUM	1	1	0.4752	FALSE	462	80	0	856	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND6--MT-TE	39	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.331	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1077_ENDOMETRIUM	1	1	0.331	FALSE	499	1288	110	792	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	WDR45B--AMZ1	35	15	WDR45B	12803	chr17:80574400:-	AMZ1	20011	chr7:2739868:+	ONLY_REF_SPLICE	YES	298	0	0.14	1	0.297	0.1273	WDR45B->WD_repeat_domain_45B,chr17:80572438-80606429:-,AMZ1->archaelysin_family_metallopeptidase_1,chr7:2719156-2815134:+	SNU1077_ENDOMETRIUM	0.14	1	0.4243	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TN	16	85	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1358	0.7213	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1077_ENDOMETRIUM	1	1	0.8571	FALSE	369	2501	205	193	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	29	30	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	15203	0	0	1	0.2461	0.2546	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0	1	0.5007	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	4	128	MT-ND4	1144	chrM:10903:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	29	0	0.82	1	0.0339	1.0862	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.82	1	1.1201	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TN	36	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3055	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1077_ENDOMETRIUM	1	1	0.3055	FALSE	369	2501	205	193	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	COL1A1--COL12A1	35	0	COL1A1	12975	chr17:48266800:-	COL12A1	80399	chr6:75797412:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.297	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	SNU1077_ENDOMETRIUM	1	1	0.297	TRUE	0	5	0	2	5	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TN	18	67	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1527	0.5686	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1077_ENDOMETRIUM	1	1	0.7213	FALSE	369	2501	205	193	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND5--MT-ATP8	32	7	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	6834	8	0.01	0.83	0.2716	0.0594	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1077_ENDOMETRIUM	0.01	0.83	0.331	FALSE	43	37	8	105	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TC	32	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2716	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1077_ENDOMETRIUM	1	1	0.2716	FALSE	462	80	0	856	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	5	99	MT-ND4	1039	chrM:10798:+	MT-ND4L	5496	chrM:10587:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.0424	0.8401	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.97	1	0.8825	FALSE	344	821	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	3	107	MT-ND4	1112	chrM:10871:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	22	0	0.83	1	0.0255	0.908	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.83	1	0.9335	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	3	96	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	17	0	0.85	1	0.0255	0.8147	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.85	1	0.8402	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	17	29	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	853	0	0.05	1	0.1443	0.2461	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.05	1	0.3904	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	3	83	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.0255	0.7043	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.97	1	0.7298	FALSE	344	821	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	7	66	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	3	1	0.96	0.99	0.0594	0.5601	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.96	0.99	0.6195	FALSE	344	821	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND6--MT-TE	23	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1952	0.017	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1077_ENDOMETRIUM	1	1	0.2122	FALSE	499	1288	110	792	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	15	29	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1585	0	0.03	1	0.1273	0.2461	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.03	1	0.3734	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TN	5	67	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0.5686	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1077_ENDOMETRIUM	1	1	0.611	FALSE	369	2501	205	193	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	14	29	MT-ND4	1213	chrM:10972:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	55	0	0.44	1	0.1188	0.2461	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.44	1	0.3649	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	12	35	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	5	0	0.9	1	0.1018	0.297	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.9	1	0.3988	FALSE	344	821	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	9	47	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1351	0	0.04	1	0.0764	0.3988	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.04	1	0.4752	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	3	70	MT-ND4	1180	chrM:10939:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	NO	38	0	0.66	1	0.0255	0.594	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.66	1	0.6195	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND5--MT-ATP8	19	5	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8596	69	0	0.26	0.1612	0.0424	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1077_ENDOMETRIUM	0	0.26	0.2036	FALSE	43	37	8	105	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TC	14	24	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1188	0.2037	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1077_ENDOMETRIUM	1	1	0.3225	FALSE	462	80	0	856	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TN	20	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1697	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1077_ENDOMETRIUM	1	1	0.1697	FALSE	369	2501	205	193	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	C15orf57--CBX3	17	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	37	23	0.43	0.55	0.1443	0.0933	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1077_ENDOMETRIUM	0.43	0.55	0.2376	TRUE	267	562	48	632	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TN	9	41	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0764	0.3479	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1077_ENDOMETRIUM	1	1	0.4243	FALSE	369	2501	205	193	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND5--MT-ATP8	15	12	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.1273	0.1018	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1077_ENDOMETRIUM	0.9	1	0.2291	FALSE	43	37	8	105	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	4	50	MT-ND4	2098	chrM:11857:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	19600	0	0	1	0.0339	0.4243	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0	1	0.4582	FALSE	325	799	43	303	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TN	3	54	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0.4582	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1077_ENDOMETRIUM	1	1	0.4837	FALSE	369	2501	205	193	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND6--MT-TE	11	20	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	8	0	0.79	1	0.0933	0.1697	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1077_ENDOMETRIUM	0.79	1	0.263	FALSE	499	1288	110	792	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	4	47	MT-ND4	1471	chrM:11230:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	762	0	0.06	1	0.0339	0.3988	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.06	1	0.4327	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	4	47	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	45	0	0.53	1	0.0339	0.3988	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.53	1	0.4327	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	4	47	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	10607	0	0	1	0.0339	0.3988	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0	1	0.4327	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	4	47	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	38	0	0.57	1	0.0339	0.3988	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.57	1	0.4327	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	7	32	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	42	0	0.48	1	0.0594	0.2716	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.48	1	0.331	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TY	15	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1273	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU1077_ENDOMETRIUM	1	1	0.1273	FALSE	13	214	14	42	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND6--MT-TE	12	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1018	0.0933	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1077_ENDOMETRIUM	1	1	0.1951	FALSE	499	1288	110	792	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	7	29	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	35	0	0.51	1	0.0594	0.2461	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.51	1	0.3055	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND5--MT-ATP8	11	13	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0933	0.1103	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1077_ENDOMETRIUM	1	1	0.2036	FALSE	43	37	8	105	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND5--MT-ATP8	13	5	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	NO	3	537	0.86	0.03	0.1103	0.0424	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1077_ENDOMETRIUM	0.03	0.86	0.1527	FALSE	43	37	8	105	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	KDSR--SERPINB2	14	0	KDSR	7459	chr18:61018121:-	SERPINB2	28961	chr18:61564325:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1188	0	KDSR->3-ketodihydrosphingosine_reductase,Oncogene{Bushman},chr18:60994959-61034743:-,SERPINB2->chr18:61538926-61571124:+,serpin_family_B_member_2	SNU1077_ENDOMETRIUM	1	1	0.1188	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	8	24	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	44	0	0.42	1	0.0679	0.2037	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.42	1	0.2716	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	4	37	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	17	0	0.71	1	0.0339	0.314	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.71	1	0.3479	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	6	29	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	55	0	0.39	1	0.0509	0.2461	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.39	1	0.297	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	10	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	93	0	0.2	1	0.0849	0.1103	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.2	1	0.1952	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	FUBP1--USP33	12	4	FUBP1	10611	chr1:78425869:-	USP33	25596	chr1:78207433:-	ONLY_REF_SPLICE	YES	284	76	0.05	0.17	0.1018	0.0339	FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	SNU1077_ENDOMETRIUM	0.05	0.17	0.1357	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	RP11-680G10.1--GSE1	12	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	13	1	0.54	0.1018	0.0255	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1077_ENDOMETRIUM	0.54	1	0.1273	TRUE	465	1949	224	605	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	LINC00511--SLC39A11	11	4	LINC00511	8867	chr17:70588342:-	SLC39A11	49102	chr17:70732858:-	ONLY_REF_SPLICE	YES	30	38	0.33	0.28	0.0933	0.0339	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	SNU1077_ENDOMETRIUM	0.28	0.33	0.1272	TRUE	0	5	0	7	4	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND6--MT-TE	9	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	8	0	0.72	1	0.0764	0.1018	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1077_ENDOMETRIUM	0.72	1	0.1782	FALSE	499	1288	110	792	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TN	12	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1018	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1077_ENDOMETRIUM	1	1	0.1018	FALSE	369	2501	205	193	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	4	29	MT-ND4	1248	chrM:11007:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	64	0	0.34	1	0.0339	0.2461	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.34	1	0.28	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	8	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	45	0	0.32	1	0.0679	0.1103	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.32	1	0.1782	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	OSBPL10--BSN	10	5	OSBPL10	12012	chr3:31871532:-	BSN	39760	chr3:49662408:+	ONLY_REF_SPLICE	YES	83	0	0.15	1	0.0849	0.0424	OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10,BSN->bassoon_presynaptic_cytomatrix_protein,chr3:49591922-49708978:+	SNU1077_ENDOMETRIUM	0.15	1	0.1273	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	FAM78A--SMYD5	11	0	FAM78A	5177	chr9:134138865:-	SMYD5	15958	chr2:73447179:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0933	0	FAM78A->chr9:134133463-134151934:-,family_with_sequence_similarity_78_member_A,SMYD5->SMYD_family_member_5,chr2:73441350-73454365:+	SNU1077_ENDOMETRIUM	1	1	0.0933	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	CALM3--MT-ND4L	10	3	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	782	0	0.02	1	0.0849	0.0255	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.02	1	0.1104	FALSE	1	1	0	107	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TC	5	22	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0.1867	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1077_ENDOMETRIUM	1	1	0.2291	FALSE	462	80	0	856	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	3	29	MT-ND4	1214	chrM:10973:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	50	0	0.39	1	0.0255	0.2461	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.39	1	0.2716	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	3	29	MT-ND4	1303	chrM:11062:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	113	0	0.22	1	0.0255	0.2461	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.22	1	0.2716	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	SHROOM3--FAM47E	9	5	SHROOM3	23016	chr4:77680848:+	FAM47E	52402	chr4:77230297:+	ONLY_REF_SPLICE	YES	75	0	0.16	1	0.0764	0.0424	SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3,FAM47E->chr4:77135193-77204933:+,chr4:77172874-77232282:+,family_with_sequence_similarity_47_member_E	SNU1077_ENDOMETRIUM	0.16	1	0.1188	TRUE	0	1	0	1	1	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	8	8	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.89	0.0679	0.0679	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.89	1	0.1358	FALSE	344	821	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TC	5	20	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0.1697	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1077_ENDOMETRIUM	1	1	0.2121	FALSE	462	80	0	856	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	3	27	MT-ND4	1818	chrM:11577:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	14395	0	0	1	0.0255	0.2291	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0	1	0.2546	FALSE	344	827	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	6	14	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	17	0	0.54	1	0.0509	0.1188	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.54	1	0.1697	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	IGFBP7--MT-ND4L	9	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0764	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	1	1	0.0764	FALSE	1	0	0	30	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND6--MT-TE	9	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0764	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1077_ENDOMETRIUM	1	1	0.0764	FALSE	499	1288	110	792	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	BEND7--FRMD4A	8	3	BEND7	2586	chr10:13568138:-	FRMD4A	36363	chr10:13900912:-	ONLY_REF_SPLICE	YES	5	2	0.69	0.85	0.0679	0.0255	BEND7->BEN_domain_containing_7,chr10:13480484-13570974:-,FRMD4A->FERM_domain_containing_4A,chr10:13685706-14504141:-	SNU1077_ENDOMETRIUM	0.69	0.85	0.0934	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	SFI1--RNF185	8	3	SFI1	11947	chr22:31953045:+	RNF185	43778	chr22:31583033:+	ONLY_REF_SPLICE	YES	28	22	0.28	0.33	0.0679	0.0255	SFI1->SFI1_centrin_binding_protein,chr22:31884674-32014572:+,RNF185->chr22:31556168-31603005:+,ring_finger_protein_185	SNU1077_ENDOMETRIUM	0.28	0.33	0.0934	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	LRRC40--PALMD	7	6	LRRC40	1231	chr1:70671073:-	PALMD	29151	chr1:100152232:+	ONLY_REF_SPLICE	YES	62	0	0.17	1	0.0594	0.0509	LRRC40->chr1:70610488-70671303:-,leucine_rich_repeat_containing_40,PALMD->chr1:100111499-100160097:+,palmdelphin	SNU1077_ENDOMETRIUM	0.17	1	0.1103	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND6--MT-TE	3	22	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	8	0	0.76	1	0.0255	0.1867	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1077_ENDOMETRIUM	0.76	1	0.2122	FALSE	499	1288	110	792	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TY	8	1	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0.0085	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU1077_ENDOMETRIUM	1	1	0.0764	FALSE	13	214	14	42	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	RNH1--AC007193.9	8	1	RNH1	9844	chr11:498457:-	AC007193.9	15221	chr19:46886078:-	INCL_NON_REF_SPLICE	YES	360	14	0.02	0.39	0.0679	0.0085	RNH1->chr11:494512-507300:-,ribonuclease/angiogenin_inhibitor_1,AC007193.9->chr19:46885749-46886426:-	SNU1077_ENDOMETRIUM	0.02	0.39	0.0764	TRUE	0	0	0	1	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	6	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.92	0.92	0.0509	0.0509	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1077_ENDOMETRIUM	0.92	0.92	0.1018	FALSE	515	4851	409	746	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	YBX3--MT-CO3	7	1	YBX3	17387	chr12:10851887:-	MT-CO3	20629	chrM:9244:+	INCL_NON_REF_SPLICE	NO	234	0	0.03	1	0.0594	0.0085	YBX3->Y-box_binding_protein_3,chr12:10851683-10875911:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU1077_ENDOMETRIUM	0.03	1	0.0679	FALSE	0	0	0	1	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND6--MT-TE	3	14	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	9	0	0.65	1	0.0255	0.1188	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1077_ENDOMETRIUM	0.65	1	0.1443	FALSE	499	1288	110	792	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	3	13	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	57	0	0.22	1	0.0255	0.1103	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.22	1	0.1358	FALSE	344	826	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	6	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	7	0	0.5	1	0.0509	0.0085	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.5	1	0.0594	FALSE	344	821	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TY	6	1	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0.0085	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU1077_ENDOMETRIUM	1	1	0.0594	FALSE	13	214	14	42	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TY	6	1	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0.0085	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU1077_ENDOMETRIUM	1	1	0.0594	FALSE	13	214	14	42	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	6	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	1	1	0.0509	FALSE	344	821	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND6--MT-TE	3	12	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	8	0	0.65	1	0.0255	0.1018	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1077_ENDOMETRIUM	0.65	1	0.1273	FALSE	499	1288	110	792	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1077_ENDOMETRIUM	1	1	0.0509	FALSE	369	2501	205	193	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TN	6	0	MT-TA	1059	chrM:5597:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1077_ENDOMETRIUM	1	1	0.0509	FALSE	369	2501	205	193	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	C15orf57--CBX3	5	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	36	23	0.18	0.26	0.0424	0.0255	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1077_ENDOMETRIUM	0.18	0.26	0.0679	TRUE	267	562	48	632	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	RP11-680G10.1--GSE1	5	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.44	0.0424	0.0255	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1077_ENDOMETRIUM	0.44	1	0.0679	TRUE	458	1351	185	561	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	COL1A1--COL4A2	5	2	COL1A1	13220	chr17:48266555:-	COL4A2	41496	chr13:111109729:+	INCL_NON_REF_SPLICE	YES	2550	1050	0	0.01	0.0424	0.017	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	SNU1077_ENDOMETRIUM	0	0.01	0.0594	FALSE	0	0	0	1	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND6--MT-TE	3	10	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	8	0	0.62	1	0.0255	0.0849	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1077_ENDOMETRIUM	0.62	1	0.1104	FALSE	499	1288	110	792	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	5	1	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	3	0	0.67	1	0.0424	0.0085	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	0.67	1	0.0509	FALSE	344	821	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	RP11-123O10.4--GRIP1	5	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0424	0.0085	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU1077_ENDOMETRIUM	1	1	0.0509	FALSE	416	2512	207	587	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	CCDC122--ENOX1	5	0	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0424	0	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	SNU1077_ENDOMETRIUM	1	1	0.0424	FALSE	39	52	2	34	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	FTH1--ACTG1	5	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SNU1077_ENDOMETRIUM	1	1	0.0424	TRUE	0	0	0	64	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	5	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	1	1	0.0424	FALSE	344	821	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TN	5	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1077_ENDOMETRIUM	1	1	0.0424	FALSE	369	2501	205	193	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	YBX3--MT-CO3	5	0	YBX3	1219	chr12:10875693:-	MT-CO3	20797	chrM:9412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	YBX3->Y-box_binding_protein_3,chr12:10851683-10875911:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU1077_ENDOMETRIUM	1	1	0.0424	FALSE	25	0	0	6	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	EXT1--SAMD12	4	2	EXT1	2769	chr8:119122324:-	SAMD12	25699	chr8:119452200:-	ONLY_REF_SPLICE	YES	178	5	0.03	0.55	0.0339	0.017	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:-:[77606],EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	SNU1077_ENDOMETRIUM	0.03	0.55	0.0509	TRUE	0	2	0	4	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND5--MT-ATP8	3	6	MT-ND5	2152	chrM:13488:+	MT-ATP8	5908	chrM:8461:+	INCL_NON_REF_SPLICE	NO	8071	1	0	0.9	0.0255	0.0509	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1077_ENDOMETRIUM	0	0.9	0.0764	FALSE	43	37	8	105	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	COL1A1--COL4A2	3	5	COL1A1	13002	chr17:48266773:-	COL4A2	27605	chr13:111077310:+	INCL_NON_REF_SPLICE	YES	1992	769	0	0.01	0.0255	0.0424	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	SNU1077_ENDOMETRIUM	0	0.01	0.0679	FALSE	0	0	0	1	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND5--MT-ATP8	3	5	MT-ND5	2555	chrM:13891:+	MT-ATP8	5935	chrM:8488:+	INCL_NON_REF_SPLICE	YES	5426	939	0	0.01	0.0255	0.0424	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1077_ENDOMETRIUM	0	0.01	0.0679	FALSE	43	37	8	105	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	COL1A1--COL12A1	4	0	COL1A1	14895	chr17:48264880:-	COL12A1	80399	chr6:75797412:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	SNU1077_ENDOMETRIUM	1	1	0.0339	TRUE	0	2	0	1	1	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1077_ENDOMETRIUM	1	1	0.0339	FALSE	369	2501	205	193	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	TSG101--SPTY2D1-AS1	4	0	TSG101	6948	chr11:18531089:-	SPTY2D1-AS1	24014	chr11:18624705:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_INVERSION:-:+:[72555],TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101,SPTY2D1-AS1->SPTY2D1_antisense_RNA_1,chr11:18621334-18631802:+	SNU1077_ENDOMETRIUM	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	ELAVL1--NDUFA7	3	3	ELAVL1	5763	chr19:8038609:-	NDUFA7	20023	chr19:8381529:-	ONLY_REF_SPLICE	YES	148	67	0.04	0.08	0.0255	0.0255	ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-,NDUFA7->NADH:ubiquinone_oxidoreductase_subunit_A7,chr19:8373167-8386263:-,chr19:8373490-8386280:-	SNU1077_ENDOMETRIUM	0.04	0.08	0.051	TRUE	0	0	0	1	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MTSS1--NSMCE2	3	3	MTSS1	1606	chr8:125740125:-	NSMCE2	32160	chr8:126114293:+	ONLY_REF_SPLICE	YES	30	12	0.17	0.33	0.0255	0.0255	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,NSMCE2->NSE2/MMS21_homolog,_SMC5-SMC6_complex_SUMO_ligase,chr8:126103921-126379362:+	SNU1077_ENDOMETRIUM	0.17	0.33	0.051	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	RP11-120D5.1--MID1	3	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	11	0.55	0.35	0.0255	0.0255	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU1077_ENDOMETRIUM	0.35	0.55	0.051	FALSE	16	356	14	466	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	TSPAN14--FAM213A	3	3	TSPAN14	6789	chr10:82249070:+	FAM213A	40745	chr10:82191742:+	ONLY_REF_SPLICE	YES	125	138	0.05	0.04	0.0255	0.0255	LOCAL_REARRANGEMENT:+:[21169],TSPAN14->chr10:82213922-82292879:+,tetraspanin_14,FAM213A->chr10:82167585-82192753:+,family_with_sequence_similarity_213_member_A	SNU1077_ENDOMETRIUM	0.04	0.05	0.051	TRUE	0	0	0	1	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TN	3	2	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0.017	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1077_ENDOMETRIUM	1	1	0.0425	FALSE	369	2501	205	193	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.017	0.0509	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1077_ENDOMETRIUM	0.89	1	0.0679	FALSE	467	2173	244	435	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	ACACA--PADI2	3	1	ACACA	31464	chr17:35608931:-	PADI2	80875	chr1:17431556:-	ONLY_REF_SPLICE	YES	61	5	0.06	0.44	0.0255	0.0085	ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,PADI2->Oncogene{Bushman},chr1:17393256-17445948:-,peptidyl_arginine_deiminase_2	SNU1077_ENDOMETRIUM	0.06	0.44	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TY	3	1	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0.0085	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU1077_ENDOMETRIUM	1	1	0.034	FALSE	13	214	14	42	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	APP--MT-CO3	3	0	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU1077_ENDOMETRIUM	1	1	0.0255	FALSE	0	0	0	26	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	COL1A1--COL12A1	3	0	COL1A1	13148	chr17:48266627:-	COL12A1	80390	chr6:75797421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	SNU1077_ENDOMETRIUM	1	1	0.0255	TRUE	0	5	0	2	5	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1077_ENDOMETRIUM	1	1	0.0255	FALSE	344	821	44	306	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1077_ENDOMETRIUM	1	1	0.0255	FALSE	499	1288	110	792	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1077_ENDOMETRIUM	1	1	0.0255	FALSE	369	2501	205	193	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TY	3	0	MT-TA	1016	chrM:5640:-	MT-TY	4072	chrM:5889:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU1077_ENDOMETRIUM	1	1	0.0255	FALSE	13	214	14	42	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	MT-TA--MT-TY	3	0	MT-TA	1021	chrM:5635:-	MT-TY	4077	chrM:5884:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0255	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU1077_ENDOMETRIUM	1	1	0.0255	FALSE	13	214	14	42	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	NOX4--RAB38	3	0	NOX4	18108	chr11:89106600:-	RAB38	31534	chr11:87883123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	NOX4->NADPH_oxidase_4,chr11:89057524-89322779:-,RAB38->RAB38,_member_RAS_oncogene_family,chr11:87846410-87908635:-	SNU1077_ENDOMETRIUM	1	1	0.0255	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	RP11-353N4.6--SEC22B	2	4	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	69	370	0.08	0.02	0.017	0.0339	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SNU1077_ENDOMETRIUM	0.02	0.08	0.0509	TRUE	49	42	7	43	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	SLC16A12--LIPA	2	4	SLC16A12	5062	chr10:91222136:-	LIPA	18335	chr10:91172679:-	ONLY_REF_SPLICE	YES	41	1	0.13	0.86	0.017	0.0339	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SNU1077_ENDOMETRIUM	0.13	0.86	0.0509	FALSE	0	24	3	7	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	SLC16A12--LIPA	3	0	SLC16A12	5062	chr10:91222136:-	LIPA	29664	chr10:91007406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SNU1077_ENDOMETRIUM	1	1	0.0255	FALSE	12	128	21	13	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	SLC16A12--LIPA	2	3	SLC16A12	5062	chr10:91222136:-	LIPA	22973	chr10:91074416:-	ONLY_REF_SPLICE	YES	41	5	0.11	0.5	0.017	0.0255	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SNU1077_ENDOMETRIUM	0.11	0.5	0.0425	FALSE	1	78	7	7	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	TUBD1--VMP1	2	3	TUBD1	12167	chr17:57941025:-	VMP1	27341	chr17:57886157:+	ONLY_REF_SPLICE	YES	24	265	0.17	0.02	0.017	0.0255	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:-:+:[17235],TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SNU1077_ENDOMETRIUM	0.02	0.17	0.0425	TRUE	0	0	0	1	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.36	1	0.017	0.017	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1077_ENDOMETRIUM	0.36	1	0.034	FALSE	125	705	46	456	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0085	0.0509	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1077_ENDOMETRIUM	1	1	0.0594	FALSE	192	492	57	212	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	HSD17B4--TNFAIP8	2	1	HSD17B4	23305	chr5:118861718:+	TNFAIP8	44947	chr5:118728511:+	ONLY_REF_SPLICE	YES	89	22	0.03	0.12	0.017	0.0085	LOCAL_REARRANGEMENT:+:[52755],HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	SNU1077_ENDOMETRIUM	0.03	0.12	0.0255	TRUE	0	0	0	1	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	BNC2--C9orf92	2	0	BNC2	9814	chr9:16552528:-	C9orf92	33426	chr9:16215897:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx_FI:{Esophagus=[count:2=pct:0.5],Lung=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},BNC2->basonuclin_2,chr9:16409501-16870841:-,C9orf92->chr9:16203933-16276311:-,chromosome_9_open_reading_frame_92	SNU1077_ENDOMETRIUM	1	1	0.017	TRUE	3	8	0	3	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	CPSF6--REV1	2	0	CPSF6	11046	chr12:69656342:+	REV1	21113	chr2:100081447:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-	SNU1077_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	DNAJC25--UGCG	2	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	SNU1077_ENDOMETRIUM	1	1	0.017	TRUE	50	73	10	50	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	FUBP1--USP33	1	4	FUBP1	10611	chr1:78425869:-	USP33	24417	chr1:78211284:-	ONLY_REF_SPLICE	NO	284	89	0.02	0.05	0.0085	0.0339	FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	SNU1077_ENDOMETRIUM	0.02	0.05	0.0424	TRUE	0	0	0	1	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	LINC00511--SLC39A11	2	0	LINC00511	3455	chr17:70614455:-	SLC39A11	49102	chr17:70732858:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	SNU1077_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	NAT10--RP11-18I14.10	2	0	NAT10	11141	chr11:34145402:+	RP11-18I14.10	31030	chr10:104209944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	NAT10->N-acetyltransferase_10,chr11:34127149-34169217:+,RP11-18I14.10->chr10:104209574-104220863:+	SNU1077_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1077_ENDOMETRIUM	1	1	0.017	FALSE	292	1546	117	613	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	PINX1--RP1L1	2	0	PINX1	6234	chr8:10683662:-	RP1L1	17312	chr8:10480730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	NEIGHBORS[52776],PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	SNU1077_ENDOMETRIUM	1	1	0.017	FALSE	1	8	0	15	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	RP11-286N22.8--DYNLT1	2	0	RP11-286N22.8	1963	chr11:61197654:+	DYNLT1	16494	chr6:159058926:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	RP11-286N22.8->chr11:61196692-61253294:+,DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1	SNU1077_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	RP11-353N4.6--SEC22B	1	4	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	73	370	0.06	0.01	0.0085	0.0339	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SNU1077_ENDOMETRIUM	0.01	0.06	0.0424	FALSE	49	42	7	43	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	RP11-353N4.6--SEC22B	1	4	RP11-353N4.6	4795	chr1:149580997:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	NO	71	370	0.07	0.01	0.0085	0.0339	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SNU1077_ENDOMETRIUM	0.01	0.07	0.0424	FALSE	0	0	0	1	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	RPL32P3--IFT122	2	0	RPL32P3	4754	chr3:129112478:-	IFT122	38380	chr3:129221554:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx_FI:{Brain=[count:2=pct:0.3],Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},LOCAL_INVERSION:-:+:[40470],RPL32P3->chr3:129101765-129118498:-,ribosomal_protein_L32_pseudogene_3,IFT122->chr3:129158968-129239198:+,intraflagellar_transport_122	SNU1077_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	4	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	UTRN--ARFGAP1	2	0	UTRN	2292	chr6:144613043:+	ARFGAP1	101412	chr20:61916218:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	UTRN->chr6:144606837-145174170:+,utrophin,ARFGAP1->ADP_ribosylation_factor_GTPase_activating_protein_1,chr20:61904137-61921142:+	SNU1077_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	17	0	0.15	1	0.0085	0.017	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1077_ENDOMETRIUM	0.15	1	0.0255	FALSE	164	806	69	479	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	11	0.6	0.21	0.0085	0.017	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU1077_ENDOMETRIUM	0.21	0.6	0.0255	FALSE	0	48	1	163	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	COL1A1--COL12A1	1	1	COL1A1	15399	chr17:48264376:-	COL12A1	72733	chr6:75812408:-	ONLY_REF_SPLICE	NO	2510	126	0	0.02	0.0085	0.0085	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	SNU1077_ENDOMETRIUM	0	0.02	0.017	FALSE	0	1	0	1	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	CTC-786C10.1--GSE1	1	1	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	YES	1	13	0.67	0.13	0.0085	0.0085	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1077_ENDOMETRIUM	0.13	0.67	0.017	TRUE	2	3	0	21	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	NO	0	97	1	0.02	0.0085	0.0085	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU1077_ENDOMETRIUM	0.02	1	0.017	TRUE	347	1186	183	220	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	ELAVL1--NDUFA7	1	1	ELAVL1	5763	chr19:8038609:-	NDUFA7	21173	chr19:8376479:-	ONLY_REF_SPLICE	YES	148	81	0.01	0.02	0.0085	0.0085	ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-,NDUFA7->NADH:ubiquinone_oxidoreductase_subunit_A7,chr19:8373167-8386263:-,chr19:8373490-8386280:-	SNU1077_ENDOMETRIUM	0.01	0.02	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	OSBPL10--BSN	1	1	OSBPL10	10820	chr3:31917925:-	BSN	39760	chr3:49662408:+	ONLY_REF_SPLICE	YES	77	0	0.03	1	0.0085	0.0085	OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10,BSN->bassoon_presynaptic_cytomatrix_protein,chr3:49591922-49708978:+	SNU1077_ENDOMETRIUM	0.03	1	0.017	TRUE	0	0	0	1	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	RASSF4--ATP5A1	1	1	RASSF4	2560	chr10:45465712:+	ATP5A1	30187	chr18:43667198:-	ONLY_REF_SPLICE	YES	51	661	0.04	0	0.0085	0.0085	RASSF4->Ras_association_domain_family_member_4,chr10:45454855-45491339:+,ATP5A1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_alpha_subunit_1,_cardiac_muscle,chr18:43664110-43684300:-	SNU1077_ENDOMETRIUM	0	0.04	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	RNH1--AC007193.9	1	1	RNH1	9844	chr11:498457:-	AC007193.9	15518	chr19:46885781:-	ONLY_REF_SPLICE	YES	360	1	0.01	0.67	0.0085	0.0085	RNH1->chr11:494512-507300:-,ribonuclease/angiogenin_inhibitor_1,AC007193.9->chr19:46885749-46886426:-	SNU1077_ENDOMETRIUM	0.01	0.67	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	RP11-1L12.3--SLC5A12	1	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0085	0.0085	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	SNU1077_ENDOMETRIUM	0.67	1	0.017	TRUE	3	101	0	60	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	RPS3--RBM39	1	1	RPS3	2292	chr11:75111821:+	RBM39	13182	chr20:34330035:-	ONLY_REF_SPLICE	YES	3365	253	0	0.01	0.0085	0.0085	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	SNU1077_ENDOMETRIUM	0	0.01	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000302
SNU1077_ENDOMETRIUM	SORBS1--KCNK9	1	1	SORBS1	3202	chr10:97250792:-	KCNK9	49685	chr8:140631342:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0085	0.0085	SORBS1->chr10:97071528-97321171:-,sorbin_and_SH3_domain_containing_1,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	SNU1077_ENDOMETRIUM	0.67	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000302
SNU1077_ENDOMETRIUM	STX18-AS1--MSX1	1	1	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	1	3	0.67	0.4	0.0085	0.0085	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	SNU1077_ENDOMETRIUM	0.4	0.67	0.017	TRUE	37	101	7	40	0	FALSE	ACH-000302
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	797	348	NPM1	4640	chr5:170818803:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	YES	1629	0	0.41	1	8.3384	3.6408	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	1	11.9792	TRUE	0	0	0	6	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	180	46	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.8832	0.4813	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.3645	TRUE	361	258	24	38	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	159	37	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.6635	0.3871	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	2.0506	TRUE	508	994	45	981	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEGF8--CNFN	131	54	MEGF8	27471	chr19:42874983:+	CNFN	37748	chr19:42891628:-	ONLY_REF_SPLICE	YES	39	0	0.83	1	1.3705	0.565	LOCAL_INVERSION:+:-:[8250],MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8,CNFN->chr19:42891171-42894439:-,cornifelin	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	1.9355	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	103	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	119	7	0.48	0.94	1.0776	0.0628	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.94	1.1404	TRUE	519	3926	326	965	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	1	167	NPM1	4265	chr5:170818428:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	YES	1841	0	0.08	1	0.0105	1.7472	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	1.7577	TRUE	0	0	0	6	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHRSX--TCEANC	31	10	DHRSX	4890	chrX:2326786:-	TCEANC	20079	chrX:13677771:+	ONLY_REF_SPLICE	YES	12	5	0.77	0.89	0.3243	0.1046	DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked,TCEANC->chrX:13671225-13700083:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.89	0.4289	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZC3H15--FAM171B	27	12	ZC3H15	6140	chr2:187366152:+	FAM171B	17938	chr2:187604955:+	ONLY_REF_SPLICE	YES	137	6	0.22	0.87	0.2825	0.1255	GTEx&tcga_normals:1/3694=0.03%,ZC3H15->chr2:187350883-187374090:+,zinc_finger_CCCH-type_containing_15,FAM171B->chr2:187558698-187630685:+,family_with_sequence_similarity_171_member_B	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.87	0.408	TRUE	0	1	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	25	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2616	0.0732	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3348	FALSE	462	80	0	856	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR1--CTD-2575K13.6	26	2	GLTSCR1	1973	chr19:48112425:+	CTD-2575K13.6	21208	chr19:42414249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.272	0.0209	GLTSCR1->chr19:48111453-48206533:+,glioma_tumor_suppressor_candidate_region_gene_1,CTD-2575K13.6->chr19:42412671-42414249:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2929	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR1--CTD-2575K13.6	18	23	GLTSCR1	3075	chr19:48173801:+	CTD-2575K13.6	21208	chr19:42414249:-	ONLY_REF_SPLICE	YES	7	0	0.85	1	0.1883	0.2406	GLTSCR1->chr19:48111453-48206533:+,glioma_tumor_suppressor_candidate_region_gene_1,CTD-2575K13.6->chr19:42412671-42414249:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.4289	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	17	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	28	5	0.5	0.85	0.1779	0.1151	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.85	0.293	TRUE	267	562	48	632	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHX15--CCDC149	16	7	DHX15	20362	chr4:24531224:-	CCDC149	29547	chr4:24878319:-	ONLY_REF_SPLICE	YES	281	3	0.08	0.88	0.1674	0.0732	DHX15->DEAH-box_helicase_15,chr4:24519064-24586173:-,CCDC149->chr4:24807739-24981826:-,coiled-coil_domain_containing_149	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.88	0.2406	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MARCH5--KIF11	11	1	MARCH5	3696	chr10:94071094:+	KIF11	15730	chr10:94366022:+	ONLY_REF_SPLICE	YES	53	16	0.18	0.43	0.1151	0.0105	MARCH5->chr10:94050920-94113721:+,membrane_associated_ring-CH-type_finger_5,KIF11->chr10:94353043-94415150:+,kinesin_family_member_11	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.43	0.1256	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	8	3	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	14	0	0.44	1	0.0837	0.0314	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.1151	FALSE	272	151	14	158	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	8	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0837	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0837	TRUE	347	1186	183	220	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	8	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0837	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0837	TRUE	0	0	0	81	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0732	0.0418	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.115	FALSE	499	1288	110	792	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0628	0.0732	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.136	FALSE	462	80	0	856	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-266K4.9--FAM66C	7	2	RP11-266K4.9	1585	chr12:8388595:+	FAM66C	19040	chr12:8368402:+	ONLY_REF_SPLICE	YES	16	0	0.36	1	0.0732	0.0209	GTEx_FI:{Brain=[count:45=pct:6.8],Esophagus=[count:2=pct:0.5],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Colon=[count:2=pct:1.0],Uterus=[count:1=pct:2.3],Pituitary=[count:1=pct:1.9],Testis=[count:1=pct:1.0]},LOCAL_REARRANGEMENT:+:[19264],RP11-266K4.9->chr12:8388011-8395160:+,FAM66C->chr12:8332805-8368747:+,family_with_sequence_similarity_66_member_C	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.0941	TRUE	33	15	0	5	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR1--MEGF8	6	5	GLTSCR1	3075	chr19:48173801:+	MEGF8	49330	chr19:42879659:+	ONLY_REF_SPLICE	YES	7	44	0.61	0.2	0.0628	0.0523	GLTSCR1->chr19:48111453-48206533:+,glioma_tumor_suppressor_candidate_region_gene_1,MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.61	0.1151	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0628	0.0314	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0942	FALSE	499	1288	110	792	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHRSX--TCEANC	5	5	DHRSX	4890	chrX:2326786:-	TCEANC	22288	chrX:13680620:+	ONLY_REF_SPLICE	YES	12	7	0.45	0.59	0.0523	0.0523	DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked,TCEANC->chrX:13671225-13700083:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.59	0.1046	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNK9--TRAPPC9	6	1	KCNK9	1347	chr8:140714953:-	TRAPPC9	74595	chr8:140744445:-	ONLY_REF_SPLICE	YES	2	7	0.78	0.5	0.0628	0.0105	LOCAL_REARRANGEMENT:-:[27287],KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.78	0.0733	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	6	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0628	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0628	TRUE	0	0	0	81	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR1--CTD-2575K13.6	6	0	GLTSCR1	1973	chr19:48112425:+	CTD-2575K13.6	21834	chr19:42413623:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0628	0	GLTSCR1->chr19:48111453-48206533:+,glioma_tumor_suppressor_candidate_region_gene_1,CTD-2575K13.6->chr19:42412671-42414249:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0628	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR1--CTD-2575K13.6	5	2	GLTSCR1	1087	chr19:48111539:+	CTD-2575K13.6	21208	chr19:42414249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0523	0.0209	GLTSCR1->chr19:48111453-48206533:+,glioma_tumor_suppressor_candidate_region_gene_1,CTD-2575K13.6->chr19:42412671-42414249:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0732	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	5	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0523	0.0105	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0628	TRUE	477	1352	189	275	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	8	MT-ND6	1196	chrM:14478:-	MT-TE	4557	chrM:14711:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0.0837	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1151	FALSE	499	1288	110	792	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	27	6	0.27	0.62	0.0314	0.0732	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.62	0.1046	TRUE	267	562	48	632	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NSD1--ZNF346	4	2	NSD1	4006	chr5:176563031:+	ZNF346	52011	chr5:176491513:+	ONLY_REF_SPLICE	YES	37	33	0.14	0.15	0.0418	0.0209	YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],LOCAL_REARRANGEMENT:+:[51836],NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.15	0.0627	TRUE	0	0	0	2	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR1--CTD-2575K13.6	4	1	GLTSCR1	3075	chr19:48173801:+	CTD-2575K13.6	21834	chr19:42413623:-	ONLY_REF_SPLICE	YES	7	21	0.42	0.19	0.0418	0.0105	GLTSCR1->chr19:48111453-48206533:+,glioma_tumor_suppressor_candidate_region_gene_1,CTD-2575K13.6->chr19:42412671-42414249:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.42	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LDLRAD3--PRR5L	4	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	34366	chr11:36422547:+	ONLY_REF_SPLICE	YES	18	1	0.22	0.83	0.0418	0.0105	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.83	0.0523	FALSE	12	71	0	11	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	4	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1208	0	0	1	0.0418	0.0105	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0523	FALSE	0	0	0	189	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHX15--CCDC149	2	8	DHX15	20362	chr4:24531224:-	CCDC149	28420	chr4:24896740:-	ONLY_REF_SPLICE	YES	281	0	0.03	1	0.0209	0.0837	DHX15->DEAH-box_helicase_15,chr4:24519064-24586173:-,CCDC149->chr4:24807739-24981826:-,coiled-coil_domain_containing_149	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.1046	TRUE	0	0	0	1	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL5	4	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0418	TRUE	0	0	0	39	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS19--GZMB	4	0	RPS19	1928	chr19:42364915:+	GZMB	12124	chr14:25103366:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19,GZMB->chr14:25100160-25103473:-,granzyme_B	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIP13--CEACAM8	4	0	TRIP13	14669	chr5:917266:+	CEACAM8	24343	chr19:43087489:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	TRIP13->chr5:892758-919472:+,thyroid_hormone_receptor_interactor_13,CEACAM8->carcinoembryonic_antigen_related_cell_adhesion_molecule_8,chr19:43084393-43099207:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	3	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1532	0	0	1	0.0314	0.0209	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0523	FALSE	13	9	0	364	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	1	EIF1	1121	chr17:39845257:+	RPS28	8168	chr19:8386425:+	INCL_NON_REF_SPLICE	YES	664	0	0.01	1	0.0314	0.0105	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0419	FALSE	0	0	0	81	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1542	0	0	1	0.0314	0.0105	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0419	FALSE	13	9	0	364	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	3989	10463	0	0	0.0314	0.0105	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0419	FALSE	183	104	9	328	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0.0105	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0419	FALSE	462	80	0	856	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHRSX--TCEANC	2	4	DHRSX	3821	chrX:2343238:-	TCEANC	20079	chrX:13677771:+	ONLY_REF_SPLICE	YES	9	5	0.4	0.55	0.0209	0.0418	DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked,TCEANC->chrX:13671225-13700083:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.55	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTFR1--RP11-112J3.15	3	0	MTFR1	13810	chr8:66631730:+	RP11-112J3.15	22834	chr9:35756858:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	MTFR1->chr8:66556969-66683496:+,mitochondrial_fission_regulator_1,RP11-112J3.15->chr9:35756709-35757937:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RGP1--PDE7A	3	0	RGP1	8656	chr9:35756858:+	PDE7A	34071	chr8:66631730:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	RGP1->RGP1_homolog,_RAB6A_GEF_complex_partner_1,chr9:35749203-35758572:+,PDE7A->chr8:66629745-66754557:-,phosphodiesterase_7A	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1L12.3--SLC5A12	3	0	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	3	101	0	60	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-640M9.1--SRGAP2B	3	0	RP11-640M9.1	2197	chr1:144520774:-	SRGAP2B	24229	chr1:143915700:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	RP11-640M9.1->chr1:144456138-144521970:-,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	2	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-536B24.2--HSPA5	3	0	RP4-536B24.2	1054	chr16:87870191:+	HSPA5	9510	chr9:127999232:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	RP4-536B24.2->chr16:87870138-87871269:+,HSPA5->Oncogene{Bushman},chr9:127997132-128003609:-,heat_shock_protein_family_A_(Hsp70)_member_5	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SERPINA1--ISY1	3	0	SERPINA1	9297	chr14:94844816:-	ISY1	23503	chr3:128853022:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	SERPINA1->Oncogene{Bushman},chr14:94843084-94857030:-,serpin_family_A_member_1,ISY1->ISY1_splicing_factor_homolog,chr3:128846258-128880136:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHRSX--TCEANC	2	3	DHRSX	4890	chrX:2326786:-	TCEANC	26104	chrX:13684436:+	ONLY_REF_SPLICE	YES	12	2	0.29	0.71	0.0209	0.0314	DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked,TCEANC->chrX:13671225-13700083:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.71	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	0	0.38	1	0.0209	0.0105	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.0314	FALSE	16	356	14	466	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABCF1--GANAB	2	0	ABCF1	2232	chr6:30545232:+	GANAB	19383	chr11:62407203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ABCF1->ATP_binding_cassette_subfamily_F_member_1,chr6:30539153-30564956:+,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASPH--EFNA5	2	0	ASPH	8053	chr8:62593527:-	EFNA5	53638	chr5:106723472:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,EFNA5->chr5:106712590-107006596:-,ephrin_A5	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C14orf37--PSMA3	2	0	C14orf37	2258	chr14:58758353:-	PSMA3	28539	chr14:58730423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	FALSE	0	1	0	4	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCNT2--SRPK1	2	0	CCNT2	6381	chr2:135700244:+	SRPK1	24491	chr6:35858790:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	CCNT2->chr2:135675805-135716912:+,cyclin_T2,SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT1--RTFDC1	2	0	CNOT1	17824	chr16:58594116:-	RTFDC1	56560	chr20:55049734:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,RTFDC1->chr20:55043647-55093943:+,replication_termination_factor_2_domain_containing_1	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELMO1--ANKIB1	2	0	ELMO1	7375	chr7:37382217:-	ANKIB1	45628	chr7:91924203:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1,ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FNDC3B--CCDC91	2	0	FNDC3B	8204	chr3:171866360:+	CCDC91	58050	chr12:28410135:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS5--CCNI	2	0	GAS5	4654	chr1:173834367:-	CCNI	11200	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding),CCNI->chr4:77968311-77997158:-,cyclin_I	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NELFCD--DYNC1LI1	2	0	NELFCD	1162	chr20:57556424:+	DYNC1LI1	22719	chr3:32574589:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	NELFCD->chr20:57556263-57570188:+,negative_elongation_factor_complex_member_C/D,DYNC1LI1->chr3:32567463-32612366:-,dynein_cytoplasmic_1_light_intermediate_chain_1	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP210--THUMPD3	2	0	NUP210	11745	chr3:13417004:-	THUMPD3	48578	chr3:9408592:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	NUP210->chr3:13357737-13461809:-,nucleoporin_210kDa,THUMPD3->THUMP_domain_containing_3,chr3:9404526-9428475:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OGFR--CIRH1A	2	0	OGFR	4491	chr20:61439677:+	CIRH1A	25882	chr16:69189774:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	OGFR->chr20:61436187-61445352:+,opioid_growth_factor_receptor,CIRH1A->chr16:69165194-69265033:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PACS1--ATP5J	2	0	PACS1	1480	chr11:65838313:+	ATP5J	33638	chr21:27102112:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1,ATP5J->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_F6,chr21:27088815-27107984:-	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PGM2--EZH2	2	0	PGM2	6284	chr4:37841881:+	EZH2	29182	chr7:148516779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	PGM2->chr4:37828255-37864558:+,phosphoglucomutase_2,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRRC2A--CC2D1A	2	0	PRRC2A	3972	chr6:31592299:+	CC2D1A	31688	chr19:14038706:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	PRRC2A->chr6:31588497-31605548:+,proline_rich_coiled-coil_2A,CC2D1A->chr19:14017014-14041692:+,coiled-coil_and_C2_domain_containing_1A	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABAC1--LIPE-AS1	2	0	RABAC1	2105	chr19:42462438:-	LIPE-AS1	16291	chr19:43026144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	RABAC1->Rab_acceptor_1,chr19:42460833-42463542:-,LIPE-AS1->LIPE_antisense_RNA_1,chr19:42901280-43156507:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--NT5M	2	0	SF1	3289	chr11:64543970:-	NT5M	18374	chr17:17209857:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	SF1->chr11:64532078-64546258:-,splicing_factor_1,NT5M->5',3'-nucleotidase,_mitochondrial,chr17:17206649-17250977:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A9--PHF14	2	0	SLC38A9	7186	chr5:54993674:-	PHF14	58284	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},SLC38A9->chr5:54921673-55069022:-,solute_carrier_family_38_member_9,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX4--SRP9	2	0	SNX4	2288	chr3:125223467:-	SRP9	19329	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	SNX4->chr3:125165495-125239041:-,sorting_nexin_4,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHRSX--TCEANC	1	1	DHRSX	2207	chrX:2418858:-	TCEANC	26104	chrX:13684436:+	ONLY_REF_SPLICE	YES	33	2	0.06	0.5	0.0105	0.0105	DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked,TCEANC->chrX:13671225-13700083:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.5	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHX15--CCDC149	1	1	DHX15	18079	chr4:24534487:-	CCDC149	29547	chr4:24878319:-	ONLY_REF_SPLICE	YES	232	3	0.01	0.4	0.0105	0.0105	DHX15->DEAH-box_helicase_15,chr4:24519064-24586173:-,CCDC149->chr4:24807739-24981826:-,coiled-coil_domain_containing_149	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.4	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABAC1--LIPE-AS1	1	1	RABAC1	2105	chr19:42462438:-	LIPE-AS1	13714	chr19:42989248:+	ONLY_REF_SPLICE	YES	564	1	0	0.67	0.0105	0.0105	RABAC1->Rab_acceptor_1,chr19:42460833-42463542:-,LIPE-AS1->LIPE_antisense_RNA_1,chr19:42901280-43156507:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.67	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VCAN--XRCC4	1	1	VCAN	5412	chr5:82789750:+	XRCC4	41394	chr5:82648944:+	ONLY_REF_SPLICE	YES	31	12	0.06	0.14	0.0105	0.0105	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Artery_-_Coronary=1},VCAN->Oncogene{Bushman},chr5:82767284-82878122:+,versican,XRCC4->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_4,chr5:82373317-82649606:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.14	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000664
SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XRN2--ACTR2	1	1	XRN2	1170	chr20:21284111:+	ACTR2	31972	chr2:65473658:+	ONLY_REF_SPLICE	YES	302	639	0.01	0	0.0105	0.0105	XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+,ACTR2->ARP2_actin-related_protein_2_homolog_(yeast),chr2:65454887-65498387:+	SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000664
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	1020	408	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	1	1	1	12.3424	4.937	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	17.2794	TRUE	361	258	24	38	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	602	503	NPM1	4640	chr5:170818803:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	YES	6283	0	0.15	1	7.2844	6.0865	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	13.3709	TRUE	0	0	0	6	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	6	427	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	5570	chr1:149591759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0726	5.1669	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	5.2395	TRUE	361	258	24	38	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	4	408	WI2-1896O14.1	2570	chr1:144676870:-	RP11-353N4.1	6356	chr1:149590973:-	INCL_NON_REF_SPLICE	YES	0	1	1	1	0.0484	4.937	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	4.9854	TRUE	361	258	24	38	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	70	41	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	37	47	0.75	0.7	0.847	0.4961	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.75	1.3431	TRUE	181	1564	124	196	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP3D1--SLC6A8	55	0	AP3D1	26929	chr19:2101455:-	SLC6A8	38438	chrX:152961595:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6655	0	GTEx&tcga_normals:500/3694=13.54%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9]},GTEx_v2:{count=1021;pct=11.80%;dist=Thyroid=52,Muscle_-_Skeletal=40,Lung=39,Esophagus_-_Mucosa=38,Testis=37,Esophagus_-_Muscularis=36,Cells_-_Transformed_fibroblasts=34,Skin_-_Sun_Exposed_(Lower_leg)=33,Nerve_-_Tibial=30,Artery_-_Tibial=29,Pituitary=28,Adipose_-_Visceral_(Omentum)=27,Spleen=27,Colon_-_Transverse=27,Stomach=26,Adrenal_Gland=26,Pancreas=25,Adipose_-_Subcutaneous=25,Breast_-_Mammary_Tissue=24,Cells_-_EBV-transformed_lymphocytes=24,Heart_-_Atrial_Appendage=24,Brain_-_Cerebellar_Hemisphere=21,Brain_-_Cerebellum=20,Colon_-_Sigmoid=20,Prostate=19,Heart_-_Left_Ventricle=19,Artery_-_Coronary=18,Brain_-_Cortex=18,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Small_Intestine_-_Terminal_Ileum=17,Artery_-_Aorta=17,Brain_-_Frontal_Cortex_(BA9)=17,Esophagus_-_Gastroesophageal_Junction=17,Skin_-_Not_Sun_Exposed_(Suprapubic)=17,Liver=16,Brain_-_Hypothalamus=13,Minor_Salivary_Gland=12,Brain_-_Hippocampus=12,Uterus=11,Ovary=10,Brain_-_Anterior_cingulate_cortex_(BA24)=10,Brain_-_Putamen_(basal_ganglia)=9,Brain_-_Caudate_(basal_ganglia)=9,Vagina=8,Whole_Blood=6,Kidney_-_Cortex=5,Brain_-_Substantia_nigra=4,Brain_-_Spinal_cord_(cervical_c-1)=3,Brain_-_Amygdala=3,=1},AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,SLC6A8->chrX:152953554-152962048:+,solute_carrier_family_6_member_8	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6655	TRUE	6	6	0	5	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	49	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.5929	0.2904	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	0.8833	TRUE	508	994	45	981	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	40	9	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	23	1	0.68	0.484	0.1089	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	1	0.5929	TRUE	347	1186	183	220	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	36	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	249	5	0.13	0.88	0.4356	0.0242	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.88	0.4598	TRUE	519	3926	326	965	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV14DV4--TRAJ39	34	5	TRAV14DV4	1589	chr14:22392827:+	TRAJ39	4596	chr14:22970591:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4114	0.0605	HGNC_GENEFAM,TRAV14DV4->T_cell_receptor_alpha_variable_14/delta_variable_4,chr14:22392239-22392827:+,TRAJ39->T_cell_receptor_alpha_joining_39,chr14:22970585-22970647:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4719	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	35	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4235	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4235	TRUE	0	0	0	518	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	29	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3509	0.0726	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4235	FALSE	462	80	0	856	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMYD2--WNK2	20	9	SMYD2	8816	chr1:214503621:+	WNK2	27323	chr9:96018581:+	ONLY_REF_SPLICE	YES	1118	0	0.03	1	0.242	0.1089	SMYD2->SET_and_MYND_domain_containing_2,chr1:214454445-214510474:+,WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.3509	TRUE	0	0	0	1	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	13	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1573	0.0605	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2178	TRUE	477	1352	189	275	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-662B19.2--WDR37	10	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.121	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.121	TRUE	31	42	1	25	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	164	47	0.1	0.28	0.0605	0.1573	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.28	0.2178	TRUE	267	562	48	632	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	7	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0847	0.0484	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1331	FALSE	515	4851	409	746	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC027119.1--AC026167.1	7	2	AC027119.1	1674	chr3:6005202:+	AC026167.1	6915	chr3:6400588:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0847	0.0242	NEIGHBORS[24364],AC027119.1->chr3:6004529-6165807:+,AC026167.1->chr3:6190171-6407572:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.1089	FALSE	1	37	1	9	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	1	25	NPM1	1891	chr5:170815010:+	ALK	40586	chr2:29445473:-	ONLY_REF_SPLICE	YES	5525	195	0	0.12	0.0121	0.3025	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.12	0.3146	TRUE	0	0	0	3	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	6	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1008	0	0.01	1	0.0726	0.0242	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0968	FALSE	0	0	0	189	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0.0847	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1331	FALSE	462	80	0	856	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	161	48	0.07	0.2	0.0363	0.1089	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.2	0.1452	TRUE	267	562	48	632	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--SUMO2	5	0	MT-CO1	1592	chrM:6495:+	SUMO2	5567	chr17:73179054:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0605	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0605	FALSE	0	0	0	12	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-CO2	4	2	MT-ND4	1496	chrM:11255:+	MT-CO2	5511	chrM:7718:+	INCL_NON_REF_SPLICE	YES	15420	5911	0	0	0.0484	0.0242	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0726	FALSE	5	1	0	19	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	3	5	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	88	1	0.08	0.0363	0.0605	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0968	TRUE	15	36	8	26	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	13	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	51	47	0.22	0.23	0.0121	0.1573	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.23	0.1694	TRUE	105	90	7	93	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A32--RP11-318M2.2	3	5	SLC25A32	1405	chr8:104427013:-	RP11-318M2.2	13760	chr8:104298133:-	INCL_NON_REF_SPLICE	YES	108	0	0.07	1	0.0363	0.0605	NEIGHBORS[99863],SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,RP11-318M2.2->chr8:104169218-104311000:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0968	FALSE	0	0	0	3	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HUWE1--MT-ND4L	3	4	HUWE1	69943	chrX:53565915:-	MT-ND4L	79803	chrM:10471:+	INCL_NON_REF_SPLICE	YES	599	0	0.01	1	0.0363	0.0484	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0847	FALSE	0	0	0	4	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	4	0	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0484	0	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0484	TRUE	67	49	0	25	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	4	0	LINC00299	17125	chr2:8200478:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0484	0	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0484	TRUE	20	19	0	15	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	3	4	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	YES	93	79	0.07	0.08	0.0363	0.0484	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.08	0.0847	TRUE	4	3	0	21	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0.0363	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0726	FALSE	462	80	0	856	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	1	10	CTD-2337A12.1	7488	chr5:95966789:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	23	1	0.32	0.0121	0.121	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.1331	TRUE	18	50	10	12	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0363	0.0242	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.0605	FALSE	16	356	14	466	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	1	9	CTD-2337A12.1	4828	chr5:95715356:+	CAST	12710	chr5:95880920:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0121	0.1089	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.121	TRUE	0	2	0	2	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	3	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0.0121	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0484	TRUE	274	363	69	150	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FTL--MT-CO1	3	0	FTL	1134	chr19:49468691:+	MT-CO1	6232	chrM:6557:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	FALSE	0	7	0	14	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XRCC6--WDR45B	3	0	XRCC6	1968	chr22:42018090:+	WDR45B	20813	chr17:80588898:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0	XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+,WDR45B->WD_repeat_domain_45B,chr17:80572438-80606429:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LY96--RP1-16A9.1	2	2	LY96	1203	chr8:74903789:+	RP1-16A9.1	10107	chr8:75119956:+	ONLY_REF_SPLICE	YES	727	0	0.01	1	0.0242	0.0242	LY96->chr8:74903587-74941322:+,lymphocyte_antigen_96,RP1-16A9.1->chr8:75111631-75120676:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0484	FALSE	0	0	0	1	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0121	0.0605	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0726	FALSE	467	2173	244	435	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC093627.9--TBC1D5	2	0	AC093627.9	1935	chr7:148532:-	TBC1D5	43975	chr3:17349626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	AC093627.9->chr7:135853-149466:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAPS2--TMBIM4	2	0	CAPS2	25622	chr12:75676031:-	TMBIM4	37045	chr12:66547228:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},CAPS2->calcyphosine_2,chr12:75669759-75784708:-,TMBIM4->chr12:66517697-66563765:-,chr12:66517709-66563852:-,transmembrane_BAX_inhibitor_motif_containing_4	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD53--RAP1A	2	0	CD53	1096	chr1:111415870:+	RAP1A	17407	chr1:112233956:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CD53->CD53_molecule,Oncogene{Bushman},chr1:111415775-111442550:+,RAP1A->Oncogene{Bushman},RAP1A,_member_of_RAS_oncogene_family,chr1:112084840-112259313:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HINFP--VPS52	2	0	HINFP	10513	chr11:119003929:+	VPS52	26229	chr6:33218764:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	HINFP->chr11:118992297-119006752:+,histone_H4_transcription_factor,VPS52->VPS52,_GARP_complex_subunit,chr6:33218049-33239824:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNAB2--ACOT7	2	0	KCNAB2	2323	chr1:6052848:+	ACOT7	45183	chr1:6393628:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LY96--RP1-16A9.1	1	4	LY96	4475	chr8:74939076:+	RP1-16A9.1	10107	chr8:75119956:+	ONLY_REF_SPLICE	YES	86	0	0.05	1	0.0121	0.0484	LY96->chr8:74903587-74941322:+,lymphocyte_antigen_96,RP1-16A9.1->chr8:75111631-75120676:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0605	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PFKFB3--RBM17	2	0	PFKFB3	1096	chr10:6186976:+	RBM17	27573	chr10:6139011:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[27461],PFKFB3->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_3,chr10:6186881-6277495:+,RBM17->RNA_binding_motif_protein_17,chr10:6130950-6159420:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	2	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0.0484	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0605	FALSE	407	2205	196	549	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SHKBP1--PLEKHG2	2	0	SHKBP1	1780	chr19:41083536:+	PLEKHG2	20918	chr19:39908195:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	SHKBP1->SH3KBP1_binding_protein_1,chr19:41082757-41097305:+,PLEKHG2->Oncogene{Bushman},chr19:39903225-39919054:+,pleckstrin_homology_and_RhoGEF_domain_containing_G2	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A12--DDX1	2	0	SLC25A12	6620	chr2:172725191:-	DDX1	41462	chr2:15753348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},SLC25A12->chr2:172640880-172864766:-,solute_carrier_family_25_member_12,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A32--RP11-318M2.2	1	4	SLC25A32	1406	chr8:104427012:-	RP11-318M2.2	18579	chr8:104258912:-	ONLY_REF_SPLICE	NO	109	0	0.04	1	0.0121	0.0484	NEIGHBORS[99863],SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,RP11-318M2.2->chr8:104169218-104311000:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0605	FALSE	1	0	0	3	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMYD2--WNK2	1	4	SMYD2	8816	chr1:214503621:+	WNK2	27972	chr9:96019230:+	ONLY_REF_SPLICE	YES	1118	6	0	0.45	0.0121	0.0484	SMYD2->SET_and_MYND_domain_containing_2,chr1:214454445-214510474:+,WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.45	0.0605	FALSE	0	0	0	1	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRABD--TMEM8A	2	0	TRABD	1062	chr22:50624405:+	TMEM8A	15512	chr16:427848:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	TRABD->TraB_domain_containing,chr22:50624344-50638027:+,TMEM8A->chr16:420773-437113:-,transmembrane_protein_8A	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	1	3	NPM1	4640	chr5:170818803:+	ALK	44480	chr2:29432744:-	ONLY_REF_SPLICE	NO	6283	357	0	0.01	0.0121	0.0363	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0484	FALSE	0	0	0	1	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A32--RP11-318M2.2	1	3	SLC25A32	1406	chr8:104427012:-	RP11-318M2.2	20486	chr8:104246600:-	ONLY_REF_SPLICE	YES	109	1	0.04	0.8	0.0121	0.0363	NEIGHBORS[99863],SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,RP11-318M2.2->chr8:104169218-104311000:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.8	0.0484	FALSE	0	0	0	3	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A32--RP11-318M2.2	1	3	SLC25A32	1406	chr8:104427012:-	RP11-318M2.2	25340	chr8:104178524:-	ONLY_REF_SPLICE	YES	109	1	0.04	0.8	0.0121	0.0363	NEIGHBORS[99863],SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,RP11-318M2.2->chr8:104169218-104311000:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.8	0.0484	FALSE	4	4	0	4	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC027119.1--AC026167.1	1	2	AC027119.1	1674	chr3:6005202:+	AC026167.1	7962	chr3:6407416:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0121	0.0242	NEIGHBORS[24364],AC027119.1->chr3:6004529-6165807:+,AC026167.1->chr3:6190171-6407572:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0363	FALSE	0	10	0	3	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG5--AC147651.4	1	2	SNHG5	1780	chr6:86387672:-	AC147651.4	10320	chr7:647502:+	ONLY_REF_SPLICE	NO	2353	122	0	0.02	0.0121	0.0242	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,AC147651.4->chr7:642822-648119:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0363	FALSE	0	0	0	1	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--EXOC2	1	1	CHD2	6529	chr15:93444529:+	EXOC2	84324	chr6:532610:-	ONLY_REF_SPLICE	YES	192	376	0.01	0.01	0.0121	0.0121	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,EXOC2->chr6:485133-693117:-,exocyst_complex_component_2	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX42--CAP1	1	1	DDX42	8261	chr17:61877977:+	CAP1	35995	chr1:40535831:+	ONLY_REF_SPLICE	NO	295	1165	0.01	0	0.0121	0.0121	DDX42->DEAD-box_helicase_42,chr17:61850963-61896677:+,CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPD1--CCT4	1	1	HSPD1	9779	chr2:198354921:-	CCT4	19306	chr2:62110683:-	ONLY_REF_SPLICE	YES	2910	1686	0	0	0.0121	0.0121	HGNC_GENEFAM,PROTCLUST,HSPD1->Oncogene{Bushman},chr2:198351305-198381461:-,heat_shock_protein_family_D_(Hsp60)_member_1,CCT4->chaperonin_containing_TCP1_subunit_4,chr2:62095224-62115939:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JARID2--DTNBP1	1	1	JARID2	1289	chr6:15246815:+	DTNBP1	32321	chr6:15638035:-	ONLY_REF_SPLICE	NO	79	341	0.02	0.01	0.0121	0.0121	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=7;pct=0.08%;dist=Lung=1,Brain_-_Hippocampus=1,Artery_-_Coronary=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:+:-:[780],JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,DTNBP1->chr6:15523032-15663289:-,dystrobrevin_binding_protein_1	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0242	FALSE	0	1	0	1	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MDM2--EXOC2	1	1	MDM2	9036	chr12:69218431:+	EXOC2	48003	chr6:499700:-	ONLY_REF_SPLICE	YES	1024	307	0	0.01	0.0121	0.0121	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,EXOC2->chr6:485133-693117:-,exocyst_complex_component_2	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYO1G--EIF3B	1	1	MYO1G	1232	chr7:45018466:-	EIF3B	35982	chr7:2418324:+	ONLY_REF_SPLICE	NO	2366	316	0	0.01	0.0121	0.0121	MYO1G->chr7:45002261-45018697:-,myosin_IG,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOR2--UBC	1	1	NCOR2	21671	chr12:124882665:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	65	118	0.03	0.02	0.0121	0.0121	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0242	TRUE	30	26	0	16	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDGFRA--DCUN1D4	1	1	PDGFRA	1319	chr4:55095582:+	DCUN1D4	39543	chr4:52729603:+	ONLY_REF_SPLICE	YES	3	34	0.4	0.06	0.0121	0.0121	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},PDGFRA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr4:55095264-55164414:+,platelet_derived_growth_factor_receptor_alpha,DCUN1D4->chr4:52709166-52783003:+,defective_in_cullin_neddylation_1_domain_containing_4	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.4	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	1	1	SPON2	4412	chr4:1195057:-	CTBP1	23049	chr4:1232125:-	ONLY_REF_SPLICE	NO	93	387	0.02	0.01	0.0121	0.0121	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0242	FALSE	2	0	0	8	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM181--EZR	1	1	TMEM181	6914	chr6:159010814:+	EZR	25739	chr6:159210403:-	ONLY_REF_SPLICE	NO	55	815	0.04	0	0.0121	0.0121	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181,EZR->chr6:159186773-159240444:-,ezrin	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000226
SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNFAIP8--HSD17B4	1	1	TNFAIP8	1216	chr5:118604602:+	HSD17B4	22456	chr5:118809603:+	ONLY_REF_SPLICE	YES	234	385	0.01	0.01	0.0121	0.0121	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	SUPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0242	FALSE	0	2	0	7	0	FALSE	ACH-000226
U251MG_CENTRAL_NERVOUS_SYSTEM	DHX38--AMPD1	74	79	DHX38	3764	chr16:72130908:+	AMPD1	23632	chr1:115231362:-	ONLY_REF_SPLICE	YES	99	0	0.61	1	0.9535	1.018	DHX38->DEAH-box_helicase_38,chr16:72127461-72146811:+,AMPD1->adenosine_monophosphate_deaminase_1,chr1:115215719-115238239:-	U251MG_CENTRAL_NERVOUS_SYSTEM	0.61	1	1.9715	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	WI2-1896O14.1--RP11-353N4.1	76	36	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.9793	0.4639	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	1.4432	TRUE	361	258	24	38	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	74	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.9535	0.4381	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	U251MG_CENTRAL_NERVOUS_SYSTEM	0.98	1	1.3916	TRUE	508	994	45	981	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	40	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5154	0.0902	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.6056	FALSE	462	80	0	856	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	DHX38--AMPD1	19	85	DHX38	4536	chr16:72131680:+	AMPD1	23632	chr1:115231362:-	ONLY_REF_SPLICE	YES	85	0	0.55	1	0.2448	1.0953	DHX38->DEAH-box_helicase_38,chr16:72127461-72146811:+,AMPD1->adenosine_monophosphate_deaminase_1,chr1:115215719-115238239:-	U251MG_CENTRAL_NERVOUS_SYSTEM	0.55	1	1.3401	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	39	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	299	4	0.12	0.91	0.5025	0.0387	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	U251MG_CENTRAL_NERVOUS_SYSTEM	0.12	0.91	0.5412	TRUE	519	3926	326	965	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MLF1IP--ENPP6	18	16	MLF1IP	8907	chr4:185634098:-	ENPP6	24827	chr4:185074886:-	ONLY_REF_SPLICE	YES	89	0	0.28	1	0.2319	0.2062	MLF1IP->chr4:185615772-185655287:-,ENPP6->chr4:185009859-185142383:-,ectonucleotide_pyrophosphatase/phosphodiesterase_6	U251MG_CENTRAL_NERVOUS_SYSTEM	0.28	1	0.4381	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	19	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	4	1	0.86	0.2448	0.0773	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	U251MG_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.3221	TRUE	477	1352	189	275	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	PSD3--RBPMS	17	12	PSD3	20075	chr8:18656805:-	RBPMS	54699	chr8:30332295:+	ONLY_REF_SPLICE	YES	71	10	0.29	0.74	0.2191	0.1546	PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,RBPMS->RNA_binding_protein_with_multiple_splicing,chr8:30241944-30429778:+	U251MG_CENTRAL_NERVOUS_SYSTEM	0.29	0.74	0.3737	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	13	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	111	35	0.18	0.42	0.1675	0.1546	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	U251MG_CENTRAL_NERVOUS_SYSTEM	0.18	0.42	0.3221	TRUE	267	562	48	632	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MICALL2--MAD1L1	12	4	MICALL2	1319	chr7:1498820:-	MAD1L1	59103	chr7:1855864:-	ONLY_REF_SPLICE	YES	24	38	0.4	0.3	0.1546	0.0515	MICALL2->MICAL_like_2,chr7:1468101-1499138:-,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	U251MG_CENTRAL_NERVOUS_SYSTEM	0.3	0.4	0.2061	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	VIM--TMSB4X	11	6	VIM	2162	chr10:17271419:+	TMSB4X	13357	chrX:12994379:+	INCL_NON_REF_SPLICE	YES	9799	349	0	0.05	0.1417	0.0773	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	U251MG_CENTRAL_NERVOUS_SYSTEM	0	0.05	0.219	TRUE	0	0	0	15	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	9	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.116	0.0515	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	U251MG_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.1675	FALSE	416	2512	207	587	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	7	6	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	4	1	0.76	0.0902	0.0773	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	U251MG_CENTRAL_NERVOUS_SYSTEM	0.76	1	0.1675	TRUE	274	363	69	150	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MT-CO2--GFAP	7	2	MT-CO2	1222	chrM:7807:+	GFAP	14155	chr17:42984391:-	INCL_NON_REF_SPLICE	NO	17197	6302	0	0	0.0902	0.0258	MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,GFAP->chr17:42982376-42994305:-,glial_fibrillary_acidic_protein	U251MG_CENTRAL_NERVOUS_SYSTEM	0	0	0.116	FALSE	11	0	0	3	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	5	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	107	35	0.11	0.27	0.0644	0.1031	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	U251MG_CENTRAL_NERVOUS_SYSTEM	0.11	0.27	0.1675	TRUE	267	562	48	632	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	IGFBP7--MT-ND4L	7	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0902	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0902	FALSE	1	0	0	30	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	6	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0773	0.0258	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.1031	FALSE	292	1546	117	613	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	VIM--IGFBP7	6	0	VIM	2695	chr10:17271952:+	IGFBP7	16001	chr4:57899417:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0773	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,VIM->chr10:17270258-17279592:+,vimentin,IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0773	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	VIM--TMSB4X	6	0	VIM	2124	chr10:17271381:+	TMSB4X	12219	chrX:12993241:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0773	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0773	TRUE	0	0	0	3	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MT-CO2--GFAP	5	2	MT-CO2	1235	chrM:7820:+	GFAP	14169	chr17:42984377:-	INCL_NON_REF_SPLICE	YES	18437	6435	0	0	0.0644	0.0258	MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,GFAP->chr17:42982376-42994305:-,glial_fibrillary_acidic_protein	U251MG_CENTRAL_NERVOUS_SYSTEM	0	0	0.0902	FALSE	11	0	0	3	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MT-CO2--GFAP	5	2	MT-CO2	1224	chrM:7809:+	GFAP	14157	chr17:42984389:-	INCL_NON_REF_SPLICE	YES	17466	6359	0	0	0.0644	0.0258	MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,GFAP->chr17:42982376-42994305:-,glial_fibrillary_acidic_protein	U251MG_CENTRAL_NERVOUS_SYSTEM	0	0	0.0902	FALSE	11	0	0	3	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	VIM--TMSB4X	4	6	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	8084	332	0	0.03	0.0515	0.0773	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	U251MG_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.1288	TRUE	0	0	0	15	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	CALM3--MT-ND4L	5	1	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1406	0	0	1	0.0644	0.0129	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	U251MG_CENTRAL_NERVOUS_SYSTEM	0	1	0.0773	FALSE	1	1	0	107	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	5	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2875	0	0	1	0.0644	0.0129	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	U251MG_CENTRAL_NERVOUS_SYSTEM	0	1	0.0773	FALSE	13	9	0	364	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	EEF2--MT2A	3	8	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	3162	4	0	0.73	0.0387	0.1031	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	U251MG_CENTRAL_NERVOUS_SYSTEM	0	0.73	0.1418	TRUE	1	0	0	19	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	5	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0644	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0644	FALSE	183	104	9	328	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	3	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0.1031	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.1418	FALSE	462	80	0	856	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	3	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0.1031	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.1418	FALSE	462	80	0	856	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0644	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0644	TRUE	458	1351	185	561	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	RP4-565E6.1--HYDIN	5	0	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0644	0	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0644	TRUE	456	1387	91	133	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	VIM--IGFBP7	5	0	VIM	2120	chr10:17271377:+	IGFBP7	12218	chr4:57976538:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0644	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,VIM->chr10:17270258-17279592:+,vimentin,IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0644	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	CASC17--RP11-238F2.1	4	0	CASC17	2134	chr17:69181737:-	RP11-238F2.1	9061	chr17:68775370:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0515	0	GTEx_FI:{Brain=[count:5=pct:0.8]},CASC17->cancer_susceptibility_candidate_17_(non-protein_coding),chr17:69093916-69198318:-,RP11-238F2.1->chr17:68774745-68775371:-	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0515	TRUE	5	17	0	2	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	CNPY3--SPACA1	4	0	CNPY3	1522	chr6:42897459:+	SPACA1	10615	chr6:88763664:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0515	0	CNPY3->canopy_FGF_signaling_regulator_3,chr6:42896938-42907025:+,SPACA1->chr6:88757507-88776550:+,sperm_acrosome_associated_1	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0515	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	4	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0515	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0515	TRUE	347	1186	183	220	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0515	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0515	FALSE	462	80	0	856	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TY	4	0	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0515	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0515	FALSE	13	214	14	42	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0515	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0515	TRUE	465	1949	224	605	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.75	0.86	0.0387	0.0387	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	U251MG_CENTRAL_NERVOUS_SYSTEM	0.75	0.86	0.0774	FALSE	515	4851	409	746	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2884	0	0	1	0.0387	0.0129	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	U251MG_CENTRAL_NERVOUS_SYSTEM	0	1	0.0516	FALSE	13	9	0	364	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	SLC1A5--MT-ND4L	3	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	948	0	0	1	0.0387	0.0129	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	U251MG_CENTRAL_NERVOUS_SYSTEM	0	1	0.0516	FALSE	0	0	0	189	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	SLC1A5--MT-ND4L	3	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	952	0	0	1	0.0387	0.0129	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	U251MG_CENTRAL_NERVOUS_SYSTEM	0	1	0.0516	FALSE	0	0	0	189	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0387	FALSE	183	104	9	328	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TY	3	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0387	FALSE	13	214	14	42	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.25	1	0.0258	0.0387	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	U251MG_CENTRAL_NERVOUS_SYSTEM	0.25	1	0.0645	FALSE	164	806	69	479	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	6	1	0.57	0.0129	0.0902	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	U251MG_CENTRAL_NERVOUS_SYSTEM	0.57	1	0.1031	TRUE	160	277	29	98	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0258	0.0387	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	U251MG_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.0645	FALSE	467	2173	244	435	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	VTI1A--RP11-57H14.3	2	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	62	0	0.06	1	0.0258	0.0258	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	U251MG_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0516	FALSE	272	151	14	158	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	ZKSCAN7--KIF15	1	5	ZKSCAN7	7346	chr3:44612157:+	KIF15	33590	chr3:44856403:+	ONLY_REF_SPLICE	YES	4	28	0.6	0.18	0.0129	0.0644	ZKSCAN7->chr3:44596685-44624975:+,zinc_finger_with_KRAB_and_SCAN_domains_7,KIF15->chr3:44803209-44914868:+,kinesin_family_member_15	U251MG_CENTRAL_NERVOUS_SYSTEM	0.18	0.6	0.0773	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	CTD-2152M20.2--GOLPH3	2	0	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0258	TRUE	10	26	2	24	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MLF1IP--ENPP6	1	4	MLF1IP	8907	chr4:185634098:-	ENPP6	26007	chr4:185045425:-	ONLY_REF_SPLICE	NO	89	7	0.05	0.42	0.0129	0.0515	MLF1IP->chr4:185615772-185655287:-,ENPP6->chr4:185009859-185142383:-,ectonucleotide_pyrophosphatase/phosphodiesterase_6	U251MG_CENTRAL_NERVOUS_SYSTEM	0.05	0.42	0.0644	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MRPS18B--XPO5	2	0	MRPS18B	1235	chr6:30585720:+	XPO5	35617	chr6:43494485:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	MRPS18B->chr6:30585486-30594172:+,mitochondrial_ribosomal_protein_S18B,XPO5->chr6:43490072-43543812:-,exportin_5	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	PCMTD1--TCEANC	2	0	PCMTD1	7395	chr8:52758221:-	TCEANC	21515	chrX:13673408:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,TCEANC->chrX:13671225-13700083:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	RP11-274B21.1--VIM	2	0	RP11-274B21.1	3261	chr7:128214845:+	VIM	26443	chr10:17276692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	RP11-274B21.1->chr7:128171752-128269512:+,VIM->chr10:17270258-17279592:+,vimentin	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.71	1	0.0129	0.0515	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	U251MG_CENTRAL_NERVOUS_SYSTEM	0.71	1	0.0644	FALSE	407	2205	196	549	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0129	0.0515	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	U251MG_CENTRAL_NERVOUS_SYSTEM	0.71	1	0.0644	FALSE	275	511	55	178	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	WTAPP1--RUVBL1	2	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	U251MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0258	TRUE	9	252	6	66	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	1	2	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	3745	337	0	0.01	0.0129	0.0258	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	U251MG_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0387	FALSE	0	7	0	19	1	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	CDH4--GNAS	1	2	CDH4	2257	chr20:59829993:+	GNAS	42120	chr20:57470667:+	ONLY_REF_SPLICE	YES	125	985	0.02	0	0.0129	0.0258	CDH4->cadherin_4,chr20:59827482-60515673:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	U251MG_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0387	FALSE	0	3	0	3	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0129	0.0258	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	U251MG_CENTRAL_NERVOUS_SYSTEM	0.25	1	0.0387	FALSE	125	705	46	456	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	53	53	0.04	0.04	0.0129	0.0129	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	U251MG_CENTRAL_NERVOUS_SYSTEM	0.04	0.04	0.0258	FALSE	118	557	29	88	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	HOXD11--PPP1R12C	1	1	HOXD11	1411	chr2:176969354:+	PPP1R12C	17800	chr19:55607703:-	ONLY_REF_SPLICE	YES	90	181	0.02	0.01	0.0129	0.0129	HOXD11->Oncogene{Bushman},chr2:176968944-176974722:+,homeobox_D11,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	U251MG_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	LAMA5--DPP10	1	1	LAMA5	5065	chr20:60926760:-	DPP10	77446	chr2:116572369:+	ONLY_REF_SPLICE	YES	104	0	0.02	1	0.0129	0.0129	LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5,DPP10->chr2:115199876-116603328:+,dipeptidyl_peptidase_like_10	U251MG_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0258	TRUE	0	0	0	1	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	MTAP--RP11-399D6.2	1	1	MTAP	9899	chr9:21854869:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	147	0	0.01	1	0.0129	0.0129	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	U251MG_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0258	FALSE	0	0	0	4	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	PICALM--SYTL2	1	1	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	NO	378	12	0.01	0.14	0.0129	0.0129	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	U251MG_CENTRAL_NERVOUS_SYSTEM	0.01	0.14	0.0258	FALSE	4	2	0	20	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	PTAR1--APBA1	1	1	PTAR1	8525	chr9:72347055:-	APBA1	24355	chr9:72132195:-	ONLY_REF_SPLICE	NO	79	6	0.02	0.25	0.0129	0.0129	NEIGHBORS[37216],PTAR1->chr9:72324438-72374875:-,protein_prenyltransferase_alpha_subunit_repeat_containing_1,APBA1->amyloid_beta_precursor_protein_binding_family_A_member_1,chr9:72042446-72287222:-	U251MG_CENTRAL_NERVOUS_SYSTEM	0.02	0.25	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000232
U251MG_CENTRAL_NERVOUS_SYSTEM	PTPRZ1--CNN3	1	1	PTPRZ1	20603	chr7:121671613:+	CNN3	44896	chr1:95367814:-	ONLY_REF_SPLICE	YES	440	2794	0	0	0.0129	0.0129	PTPRZ1->chr7:121513143-121702090:+,protein_tyrosine_phosphatase,_receptor_type_Z1,CNN3->calponin_3,chr1:95362507-95392834:-	U251MG_CENTRAL_NERVOUS_SYSTEM	0	0	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000232
FU97_STOMACH	ATP2A2--IFT81	470	398	ATP2A2	15858	chr12:110771948:+	IFT81	55642	chr12:110655849:+	ONLY_REF_SPLICE	YES	939	34	0.48	0.96	4.8902	4.141	YOSHIHARA_TCGA_num_samples[LUAD:2],{Klijn_CCL:Stomach=1,Cervix=1},LOCAL_REARRANGEMENT:+:[61959],ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+,IFT81->chr12:110562140-110656602:+,intraflagellar_transport_81	FU97_STOMACH	0.48	0.96	9.0312	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	MT-ND6--MT-TE	92	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.9572	0.0104	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FU97_STOMACH	0.99	1	0.9676	FALSE	499	1288	110	792	0	FALSE	ACH-000633
FU97_STOMACH	TIMM23B--LINC00843	74	49	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7699	0.5098	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	FU97_STOMACH	0.99	1	1.2797	TRUE	508	994	45	981	0	FALSE	ACH-000633
FU97_STOMACH	AP3D1--SLC6A8	78	0	AP3D1	26929	chr19:2101455:-	SLC6A8	38438	chrX:152961595:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8116	0	GTEx&tcga_normals:500/3694=13.54%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9]},GTEx_v2:{count=1021;pct=11.80%;dist=Thyroid=52,Muscle_-_Skeletal=40,Lung=39,Esophagus_-_Mucosa=38,Testis=37,Esophagus_-_Muscularis=36,Cells_-_Transformed_fibroblasts=34,Skin_-_Sun_Exposed_(Lower_leg)=33,Nerve_-_Tibial=30,Artery_-_Tibial=29,Pituitary=28,Adipose_-_Visceral_(Omentum)=27,Spleen=27,Colon_-_Transverse=27,Stomach=26,Adrenal_Gland=26,Pancreas=25,Adipose_-_Subcutaneous=25,Breast_-_Mammary_Tissue=24,Cells_-_EBV-transformed_lymphocytes=24,Heart_-_Atrial_Appendage=24,Brain_-_Cerebellar_Hemisphere=21,Brain_-_Cerebellum=20,Colon_-_Sigmoid=20,Prostate=19,Heart_-_Left_Ventricle=19,Artery_-_Coronary=18,Brain_-_Cortex=18,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Small_Intestine_-_Terminal_Ileum=17,Artery_-_Aorta=17,Brain_-_Frontal_Cortex_(BA9)=17,Esophagus_-_Gastroesophageal_Junction=17,Skin_-_Not_Sun_Exposed_(Suprapubic)=17,Liver=16,Brain_-_Hypothalamus=13,Minor_Salivary_Gland=12,Brain_-_Hippocampus=12,Uterus=11,Ovary=10,Brain_-_Anterior_cingulate_cortex_(BA24)=10,Brain_-_Putamen_(basal_ganglia)=9,Brain_-_Caudate_(basal_ganglia)=9,Vagina=8,Whole_Blood=6,Kidney_-_Cortex=5,Brain_-_Substantia_nigra=4,Brain_-_Spinal_cord_(cervical_c-1)=3,Brain_-_Amygdala=3,=1},AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,SLC6A8->chrX:152953554-152962048:+,solute_carrier_family_6_member_8	FU97_STOMACH	1	1	0.8116	TRUE	6	6	0	5	0	FALSE	ACH-000633
FU97_STOMACH	BANP--CA5A	68	1	BANP	3272	chr16:87985121:+	CA5A	39897	chr16:87936126:-	ONLY_REF_SPLICE	YES	0	20	1	0.78	0.7075	0.0104	LOCAL_INVERSION:+:-:[12715],BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+,CA5A->carbonic_anhydrase_5A,chr16:87921625-87970135:-	FU97_STOMACH	0.78	1	0.7179	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	GMCL1--ANXA4	51	51	GMCL1	9891	chr2:70076874:+	ANXA4	30750	chr2:70031665:+	ONLY_REF_SPLICE	YES	123	2083	0.45	0.05	0.5306	0.5306	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[3178],GMCL1->chr2:70056774-70108528:+,germ_cell-less,_spermatogenesis_associated_1,ANXA4->annexin_A4,chr2:69871557-70053596:+	FU97_STOMACH	0.05	0.45	1.0612	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	MT-ND6--MT-TE	60	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6243	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FU97_STOMACH	1	1	0.6243	FALSE	499	1288	110	792	0	FALSE	ACH-000633
FU97_STOMACH	TIMM23--RP11-464F9.1	46	10	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	540	7	0.09	0.89	0.4786	0.104	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	FU97_STOMACH	0.09	0.89	0.5826	TRUE	519	3926	326	965	0	FALSE	ACH-000633
FU97_STOMACH	KRT19--SLC47A1	34	32	KRT19	1481	chr17:39684080:-	SLC47A1	11788	chr17:19445706:+	ONLY_REF_SPLICE	YES	272	12	0.2	0.85	0.3538	0.3329	{Klijn_CCL:Stomach=1},KRT19->chr17:39679869-39684560:-,keratin_19,SLC47A1->chr17:19398698-19482347:+,solute_carrier_family_47_member_1	FU97_STOMACH	0.2	0.85	0.6867	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	MT-ND6--MT-TE	41	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4266	0.0104	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FU97_STOMACH	1	1	0.437	FALSE	499	1288	110	792	0	FALSE	ACH-000633
FU97_STOMACH	KIAA0368--SUSD1	30	21	KIAA0368	25389	chr9:114170851:-	SUSD1	74323	chr9:114804240:-	ONLY_REF_SPLICE	YES	162	79	0.24	0.39	0.3121	0.2185	KIAA0368->KIAA0368,chr9:114122972-114247025:-,SUSD1->chr9:114803065-114937688:-,sushi_domain_containing_1	FU97_STOMACH	0.24	0.39	0.5306	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	MT-ND4--MT-ND1	34	1	MT-ND4	2043	chrM:11802:+	MT-ND1	5745	chrM:3673:+	INCL_NON_REF_SPLICE	NO	18199	10165	0	0	0.3538	0.0104	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	FU97_STOMACH	0	0	0.3642	FALSE	51	52	3	16	0	FALSE	ACH-000633
FU97_STOMACH	MT-ND6--MT-TE	30	2	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.3121	0.0208	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FU97_STOMACH	0.97	1	0.3329	FALSE	499	1288	110	792	0	FALSE	ACH-000633
FU97_STOMACH	NXN--GLOD4	23	13	NXN	1452	chr17:882559:-	GLOD4	30206	chr17:674701:-	ONLY_REF_SPLICE	YES	59	826	0.38	0.04	0.2393	0.1353	NEIGHBORS[16972],NXN->chr17:702553-883010:-,nucleoredoxin,GLOD4->chr17:660337-685581:-,glyoxalase_domain_containing_4	FU97_STOMACH	0.04	0.38	0.3746	FALSE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	KIAA0195--ARMC7	13	32	KIAA0195	18849	chr17:73492552:+	ARMC7	27124	chr17:73110264:+	ONLY_REF_SPLICE	YES	79	44	0.36	0.51	0.1353	0.3329	KIAA0195->chr17:73437240-73496171:+,ARMC7->armadillo_repeat_containing_7,chr17:73106047-73126360:+	FU97_STOMACH	0.36	0.51	0.4682	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	RP11-680G10.1--GSE1	15	16	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.78	0.1561	0.1665	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	FU97_STOMACH	0.78	1	0.3226	TRUE	458	1351	185	561	0	FALSE	ACH-000633
FU97_STOMACH	FNDC3B--TMEM212	13	21	FNDC3B	6332	chr3:171851336:+	TMEM212	48823	chr3:171569772:+	ONLY_REF_SPLICE	YES	734	0	0.04	1	0.1353	0.2185	FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,TMEM212->chr3:171561139-171656505:+,transmembrane_protein_212	FU97_STOMACH	0.04	1	0.3538	TRUE	0	1	0	1	1	TRUE	ACH-000633
FU97_STOMACH	HSPG2--WNT4	14	13	HSPG2	51307	chr1:22156486:-	WNT4	62097	chr1:22456344:-	ONLY_REF_SPLICE	YES	103	0	0.21	1	0.1457	0.1353	HSPG2->Oncogene{Bushman},chr1:22148738-22263790:-,heparan_sulfate_proteoglycan_2,WNT4->Wnt_family_member_4,chr1:22443798-22470462:-	FU97_STOMACH	0.21	1	0.281	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	MT-ND4--MT-ND4L	17	1	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	58	0	0.24	1	0.1769	0.0104	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FU97_STOMACH	0.24	1	0.1873	FALSE	344	827	44	306	0	FALSE	ACH-000633
FU97_STOMACH	MT-ND4--MT-ND4L	12	13	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	3	0.81	0.89	0.1249	0.1353	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FU97_STOMACH	0.81	0.89	0.2602	FALSE	344	821	44	306	0	FALSE	ACH-000633
FU97_STOMACH	SMAD6--ZWILCH	12	12	SMAD6	6684	chr15:67009390:+	ZWILCH	13715	chr15:66801183:+	INCL_NON_REF_SPLICE	YES	275	17	0.08	0.59	0.1249	0.1249	SMAD6->SMAD_family_member_6,chr15:66994566-67074338:+,ZWILCH->chr15:66797297-66842115:+,zwilch_kinetochore_protein	FU97_STOMACH	0.08	0.59	0.2498	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	GMCL1--ANXA4	2	51	GMCL1	9891	chr2:70076874:+	ANXA4	29627	chr2:70030525:+	ONLY_REF_SPLICE	YES	123	2224	0.3	0.02	0.0208	0.5306	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[3178],GMCL1->chr2:70056774-70108528:+,germ_cell-less,_spermatogenesis_associated_1,ANXA4->annexin_A4,chr2:69871557-70053596:+	FU97_STOMACH	0.02	0.3	0.5514	TRUE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	MT-ND4--MT-ND4L	5	27	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	14	0	0.7	1	0.052	0.2809	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FU97_STOMACH	0.7	1	0.3329	FALSE	344	826	44	306	0	FALSE	ACH-000633
FU97_STOMACH	RP11-603B24.1--HERC2P3	10	7	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.104	0.0728	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	FU97_STOMACH	1	1	0.1768	TRUE	27	10	1	20	0	FALSE	ACH-000633
FU97_STOMACH	MT-ND4--MT-ND4L	6	22	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	8627	0	0	1	0.0624	0.2289	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FU97_STOMACH	0	1	0.2913	FALSE	344	827	44	306	0	FALSE	ACH-000633
FU97_STOMACH	SCARB1--UBC	11	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	157	117	0.07	0.09	0.1145	0.0104	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	FU97_STOMACH	0.07	0.09	0.1249	TRUE	55	66	6	101	0	FALSE	ACH-000633
FU97_STOMACH	MT-ND4--MT-ND4L	5	22	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	7	1	0.79	0.96	0.052	0.2289	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FU97_STOMACH	0.79	0.96	0.2809	FALSE	344	826	44	306	0	FALSE	ACH-000633
FU97_STOMACH	MT-ND4--MT-ND4L	3	29	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	14	1	0.7	0.97	0.0312	0.3017	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FU97_STOMACH	0.7	0.97	0.3329	FALSE	344	826	44	306	0	FALSE	ACH-000633
FU97_STOMACH	RP11-680G10.1--GSE1	8	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	30	1	0.36	0.0832	0.0936	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	FU97_STOMACH	0.36	1	0.1768	TRUE	465	1949	224	605	0	FALSE	ACH-000633
FU97_STOMACH	SNHG12--RPS19	9	2	SNHG12	2394	chr1:28908102:-	RPS19	13164	chr19:42373101:+	ONLY_REF_SPLICE	YES	212	4309	0.05	0	0.0936	0.0208	SNHG12->chr1:28905050-28909495:-,small_nucleolar_RNA_host_gene_12,RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19	FU97_STOMACH	0	0.05	0.1144	TRUE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	MT-ND4--MT-ND4L	6	10	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	917	0	0.02	1	0.0624	0.104	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FU97_STOMACH	0.02	1	0.1664	FALSE	344	827	44	306	0	FALSE	ACH-000633
FU97_STOMACH	NXN--GLOD4	4	16	NXN	17750	chr17:706922:-	GLOD4	26236	chr17:681984:-	ONLY_REF_SPLICE	YES	210	321	0.09	0.06	0.0416	0.1665	NEIGHBORS[16972],NXN->chr17:702553-883010:-,nucleoredoxin,GLOD4->chr17:660337-685581:-,glyoxalase_domain_containing_4	FU97_STOMACH	0.06	0.09	0.2081	FALSE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	CA5A--BANP	6	6	CA5A	1221	chr16:87969915:-	BANP	22006	chr16:88008654:+	ONLY_REF_SPLICE	YES	39	5	0.24	0.71	0.0624	0.0624	LOCAL_INVERSION:-:+:[12715],CA5A->carbonic_anhydrase_5A,chr16:87921625-87970135:-,BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+	FU97_STOMACH	0.24	0.71	0.1248	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	PPIL2--PI4KAP2	6	5	PPIL2	15482	chr22:22037546:+	PI4KAP2	37918	chr22:21841216:-	ONLY_REF_SPLICE	YES	111	490	0.09	0.02	0.0624	0.052	PPIL2->chr22:22006559-22054304:+,peptidylprolyl_isomerase_like_2,PI4KAP2->chr22:21827289-21871822:-,phosphatidylinositol_4-kinase_alpha_pseudogene_2	FU97_STOMACH	0.02	0.09	0.1144	TRUE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	TRMT112--PRDX5	6	4	TRMT112	1636	chr11:64084921:-	PRDX5	6925	chr11:64087206:+	ONLY_REF_SPLICE	YES	285	1834	0.03	0.01	0.0624	0.0416	{Klijn_CCL:Stomach=1},LOCAL_INVERSION:-:+:[4],TRMT112->chr11:64083932-64085556:-,tRNA_methyltransferase_11-2_homolog_(S._cerevisiae),PRDX5->chr11:64085560-64089283:+,peroxiredoxin_5	FU97_STOMACH	0.01	0.03	0.104	TRUE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	AAMDC--ABCB10	6	3	AAMDC	4641	chr11:77553674:+	ABCB10	24497	chr1:229667478:-	ONLY_REF_SPLICE	YES	142	118	0.06	0.07	0.0624	0.0312	AAMDC->adipogenesis_associated,_Mth938_domain_containing,chr11:77532155-77629478:+,ABCB10->ATP_binding_cassette_subfamily_B_member_10,Oncogene{Bushman},chr1:229652329-229694442:-	FU97_STOMACH	0.06	0.07	0.0936	TRUE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	FNDC3B--TMEM212	4	11	FNDC3B	6332	chr3:171851336:+	TMEM212	49883	chr3:171571317:+	ONLY_REF_SPLICE	YES	734	0	0.02	1	0.0416	0.1145	FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,TMEM212->chr3:171561139-171656505:+,transmembrane_protein_212	FU97_STOMACH	0.02	1	0.1561	TRUE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	RP11-1319K7.1--GTF2H2B	6	3	RP11-1319K7.1	12960	chr5:69394512:-	GTF2H2B	19908	chr5:69716076:+	ONLY_REF_SPLICE	YES	24	175	0.27	0.05	0.0624	0.0312	RP11-1319K7.1->chr5:69390202-69424261:-,GTF2H2B->chr5:69711179-69743885:+,general_transcription_factor_IIH_subunit_2B_(pseudogene)	FU97_STOMACH	0.05	0.27	0.0936	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	MT-ND6--MT-TE	6	2	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0624	0.0208	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FU97_STOMACH	0.8	1	0.0832	FALSE	499	1288	110	792	0	FALSE	ACH-000633
FU97_STOMACH	MT-ND4--MT-ND4L	4	9	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	58	0	0.18	1	0.0416	0.0936	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FU97_STOMACH	0.18	1	0.1352	FALSE	344	827	44	306	0	FALSE	ACH-000633
FU97_STOMACH	NPHP4--MAP7D1	5	5	NPHP4	16885	chr1:5964677:-	MAP7D1	43159	chr1:36636572:+	ONLY_REF_SPLICE	YES	47	23	0.18	0.3	0.052	0.052	NPHP4->chr1:5922871-6052533:-,nephronophthisis_4,MAP7D1->MAP7_domain_containing_1,chr1:36621180-36646450:+	FU97_STOMACH	0.18	0.3	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	RP11-96H19.1--RP11-446N19.1	5	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.052	0.052	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	FU97_STOMACH	1	1	0.104	FALSE	515	4851	409	746	0	FALSE	ACH-000633
FU97_STOMACH	MT-ND4--MT-ND4L	4	8	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	6	0	0.67	1	0.0416	0.0832	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FU97_STOMACH	0.67	1	0.1248	FALSE	344	821	44	306	0	FALSE	ACH-000633
FU97_STOMACH	RP4-565E6.1--HYDIN	4	8	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0.0832	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	FU97_STOMACH	1	1	0.1248	TRUE	456	1387	91	133	0	FALSE	ACH-000633
FU97_STOMACH	BANP--CA5A	3	11	BANP	4030	chr16:87985879:+	CA5A	39897	chr16:87936126:-	ONLY_REF_SPLICE	YES	5	20	0.74	0.41	0.0312	0.1145	LOCAL_INVERSION:+:-:[12715],BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+,CA5A->carbonic_anhydrase_5A,chr16:87921625-87970135:-	FU97_STOMACH	0.41	0.74	0.1457	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	MT-ND4--MT-ND4L	5	3	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	6	0	0.57	1	0.052	0.0312	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FU97_STOMACH	0.57	1	0.0832	FALSE	344	821	44	306	0	FALSE	ACH-000633
FU97_STOMACH	NXPE3--ABI3BP	5	3	NXPE3	3808	chr3:101501624:+	ABI3BP	25764	chr3:100621530:-	ONLY_REF_SPLICE	YES	57	0	0.12	1	0.052	0.0312	NXPE3->chr3:101498046-101547073:+,neurexophilin_and_PC-esterase_domain_family_member_3,ABI3BP->ABI_family_member_3_binding_protein,chr3:100468000-100712359:-	FU97_STOMACH	0.12	1	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	RP11-6N13.1--CTD-2374C24.1	4	7	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0.0728	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	FU97_STOMACH	1	1	0.1144	TRUE	5	4	0	46	0	FALSE	ACH-000633
FU97_STOMACH	AL021546.6--PLA2G1B	5	2	AL021546.6	2497	chr12:120884632:+	PLA2G1B	8845	chr12:120763823:-	ONLY_REF_SPLICE	YES	102	0	0.06	1	0.052	0.0208	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},AL021546.6->chr12:120876001-120897809:+,PLA2G1B->chr12:120759914-120765592:-,phospholipase_A2_group_IB	FU97_STOMACH	0.06	1	0.0728	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	MT-ND6--MT-TE	5	2	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.052	0.0208	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FU97_STOMACH	0.78	1	0.0728	FALSE	499	1288	110	792	0	FALSE	ACH-000633
FU97_STOMACH	NXN--GLOD4	2	14	NXN	9957	chr17:767255:-	GLOD4	30206	chr17:674701:-	ONLY_REF_SPLICE	YES	69	826	0.19	0.02	0.0208	0.1457	NEIGHBORS[16972],NXN->chr17:702553-883010:-,nucleoredoxin,GLOD4->chr17:660337-685581:-,glyoxalase_domain_containing_4	FU97_STOMACH	0.02	0.19	0.1665	FALSE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	HEG1--SLC12A8	4	5	HEG1	18078	chr3:124696703:-	SLC12A8	49144	chr3:124829179:-	ONLY_REF_SPLICE	YES	148	72	0.06	0.11	0.0416	0.052	LOCAL_REARRANGEMENT:-:[26678],HEG1->chr3:124684554-124774802:-,heart_development_protein_with_EGF_like_domains_1,SLC12A8->chr3:124801480-124998021:-,solute_carrier_family_12_member_8	FU97_STOMACH	0.06	0.11	0.0936	TRUE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	MT-ND4--MT-ND4L	5	1	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	20	0	0.23	1	0.052	0.0104	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FU97_STOMACH	0.23	1	0.0624	FALSE	344	826	44	306	0	FALSE	ACH-000633
FU97_STOMACH	BLVRA--STK17A	5	0	BLVRA	4300	chr7:43810769:+	STK17A	17592	chr7:43647855:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.052	0	BLVRA->biliverdin_reductase_A,chr7:43798279-43846939:+,STK17A->chr7:43622357-43666385:+,serine/threonine_kinase_17a	FU97_STOMACH	1	1	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	KIAA0195--ARMC7	2	10	KIAA0195	18849	chr17:73492552:+	ARMC7	28786	chr17:73124772:+	ONLY_REF_SPLICE	YES	79	30	0.13	0.29	0.0208	0.104	KIAA0195->chr17:73437240-73496171:+,ARMC7->armadillo_repeat_containing_7,chr17:73106047-73126360:+	FU97_STOMACH	0.13	0.29	0.1248	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	MT-ND6--MT-TE	4	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0.0104	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FU97_STOMACH	1	1	0.052	FALSE	499	1288	110	792	0	FALSE	ACH-000633
FU97_STOMACH	MT-ND6--MT-TE	4	1	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0416	0.0104	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FU97_STOMACH	0.83	1	0.052	FALSE	499	1288	110	792	0	FALSE	ACH-000633
FU97_STOMACH	ARHGEF10L--RP11-723G8.2	4	0	ARHGEF10L	1116	chr1:17866445:+	RP11-723G8.2	45382	chr18:69403790:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	ARHGEF10L->Rho_guanine_nucleotide_exchange_factor_10_like,chr1:17866330-18024369:+,RP11-723G8.2->chr18:69399851-69455364:-	FU97_STOMACH	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	FNDC3B--TMEM212	3	4	FNDC3B	1144	chr3:171757561:+	TMEM212	49883	chr3:171571317:+	ONLY_REF_SPLICE	YES	280	0	0.02	1	0.0312	0.0416	FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,TMEM212->chr3:171561139-171656505:+,transmembrane_protein_212	FU97_STOMACH	0.02	1	0.0728	TRUE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	MT-ND6--MT-TE	4	0	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FU97_STOMACH	1	1	0.0416	FALSE	499	1288	110	792	0	FALSE	ACH-000633
FU97_STOMACH	RP11-476K15.1--CTD-2015H3.2	4	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	FU97_STOMACH	1	1	0.0416	FALSE	0	46	0	73	0	FALSE	ACH-000633
FU97_STOMACH	ZNF26--ARHGAP9	4	0	ZNF26	1509	chr12:133563459:+	ARHGAP9	22539	chr12:57868486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	ZNF26->chr12:133562951-133589154:+,zinc_finger_protein_26,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	FU97_STOMACH	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	UVRAG--MYLK	3	3	UVRAG	7929	chr11:75599947:+	MYLK	34627	chr3:123550517:-	ONLY_REF_SPLICE	YES	71	1	0.08	0.86	0.0312	0.0312	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,MYLK->chr3:123328896-123603178:-,myosin_light_chain_kinase	FU97_STOMACH	0.08	0.86	0.0624	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	AAMDC--ABCB10	3	2	AAMDC	4641	chr11:77553674:+	ABCB10	25593	chr1:229666155:-	ONLY_REF_SPLICE	YES	142	112	0.03	0.04	0.0312	0.0208	AAMDC->adipogenesis_associated,_Mth938_domain_containing,chr11:77532155-77629478:+,ABCB10->ATP_binding_cassette_subfamily_B_member_10,Oncogene{Bushman},chr1:229652329-229694442:-	FU97_STOMACH	0.03	0.04	0.052	TRUE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	FNDC3B--TMEM212	2	6	FNDC3B	1997	chr3:171758414:+	TMEM212	48823	chr3:171569772:+	ONLY_REF_SPLICE	YES	383	0	0.02	1	0.0208	0.0624	FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,TMEM212->chr3:171561139-171656505:+,transmembrane_protein_212	FU97_STOMACH	0.02	1	0.0832	TRUE	0	1	0	1	1	FALSE	ACH-000633
FU97_STOMACH	HSPG2--WNT4	2	6	HSPG2	50318	chr1:22157475:-	WNT4	62097	chr1:22456344:-	ONLY_REF_SPLICE	YES	166	0	0.05	1	0.0208	0.0624	HSPG2->Oncogene{Bushman},chr1:22148738-22263790:-,heparan_sulfate_proteoglycan_2,WNT4->Wnt_family_member_4,chr1:22443798-22470462:-	FU97_STOMACH	0.05	1	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	RP11-307P5.1--SASH1	2	6	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	6	1	0.57	0.0208	0.0624	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	FU97_STOMACH	0.57	1	0.0832	TRUE	0	2	0	37	2	FALSE	ACH-000633
FU97_STOMACH	CBX5--MARCH9	3	1	CBX5	5659	chr12:54645825:-	MARCH9	24694	chr12:58151891:+	ONLY_REF_SPLICE	YES	177	16	0.02	0.2	0.0312	0.0104	CBX5->chr12:54624724-54673886:-,chromobox_5,MARCH9->chr12:58148881-58154190:+,membrane_associated_ring-CH-type_finger_9	FU97_STOMACH	0.02	0.2	0.0416	TRUE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	MT-ND6--MT-TE	3	1	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0312	0.0104	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FU97_STOMACH	0.67	1	0.0416	FALSE	499	1288	110	792	0	FALSE	ACH-000633
FU97_STOMACH	LYSMD4--VWA5A	3	0	LYSMD4	7899	chr15:100260989:-	VWA5A	24891	chr11:124012305:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	LYSMD4->LysM_domain_containing_4,chr15:100255902-100273766:-,VWA5A->chr11:123986069-124018428:+,von_Willebrand_factor_A_domain_containing_5A	FU97_STOMACH	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	MT-ND4--MT-ND4L	3	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FU97_STOMACH	1	1	0.0312	FALSE	344	821	44	306	0	FALSE	ACH-000633
FU97_STOMACH	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FU97_STOMACH	1	1	0.0312	FALSE	344	821	44	306	0	FALSE	ACH-000633
FU97_STOMACH	PNISR--RP11-347C12.1	3	0	PNISR	1117	chr6:99873091:-	RP11-347C12.1	25326	chr16:30246900:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-,RP11-347C12.1->chr16:30234258-30265831:-	FU97_STOMACH	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	RP11-120D5.1--MID1	2	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	13	0.6	0.32	0.0208	0.0416	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	FU97_STOMACH	0.32	0.6	0.0624	FALSE	16	356	14	466	0	FALSE	ACH-000633
FU97_STOMACH	RP11-476K15.1--CTD-2015H3.2	3	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	FU97_STOMACH	1	1	0.0312	FALSE	0	46	0	73	0	FALSE	ACH-000633
FU97_STOMACH	RRBP1--JAG1	3	0	RRBP1	10888	chr20:17614105:-	JAG1	30633	chr20:10644662:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	RRBP1->chr20:17594323-17662940:-,ribosome_binding_protein_1,JAG1->Oncogene{Bushman},chr20:10618332-10654694:-,chr20:10625847-10627014:-,jagged_1	FU97_STOMACH	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	TPM4--AC009227.2	3	0	TPM4	16147	chr19:16212221:+	AC009227.2	25031	chr2:155293896:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4,AC009227.2->chr2:155292365-155313950:-	FU97_STOMACH	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	TTR--MT-ATP8	3	0	TTR	5638	chr18:29178618:+	MT-ATP8	9062	chrM:8433:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	TTR->chr18:29171689-29178974:+,transthyretin,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FU97_STOMACH	1	1	0.0312	FALSE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	AAMDC--ABCB10	2	3	AAMDC	5779	chr11:77566528:+	ABCB10	24497	chr1:229667478:-	ONLY_REF_SPLICE	YES	164	118	0.03	0.04	0.0208	0.0312	AAMDC->adipogenesis_associated,_Mth938_domain_containing,chr11:77532155-77629478:+,ABCB10->ATP_binding_cassette_subfamily_B_member_10,Oncogene{Bushman},chr1:229652329-229694442:-	FU97_STOMACH	0.03	0.04	0.052	TRUE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	FNDC3B--PLD1	2	3	FNDC3B	6332	chr3:171851336:+	PLD1	49603	chr3:171507325:-	ONLY_REF_SPLICE	YES	734	118	0.01	0.04	0.0208	0.0312	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Coronary=1,Esophagus_-_Mucosa=1},FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,PLD1->Oncogene{Bushman},chr3:171318195-171528740:-,phospholipase_D1	FU97_STOMACH	0.01	0.04	0.052	FALSE	0	2	0	4	1	FALSE	ACH-000633
FU97_STOMACH	RP11-6N13.1--CTD-2374C24.1	1	7	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0104	0.0728	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	FU97_STOMACH	1	1	0.0832	TRUE	5	12	0	42	0	FALSE	ACH-000633
FU97_STOMACH	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0104	0.0728	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	FU97_STOMACH	1	1	0.0832	FALSE	407	2205	196	549	0	FALSE	ACH-000633
FU97_STOMACH	SLC39A14--EVA1B	2	3	SLC39A14	1160	chr8:22224921:+	EVA1B	23904	chr1:36788668:-	ONLY_REF_SPLICE	YES	634	1	0.01	0.83	0.0208	0.0312	SLC39A14->chr8:22224762-22291642:+,solute_carrier_family_39_member_14,EVA1B->chr1:36787632-36789755:-,eva-1_homolog_B_(C._elegans)	FU97_STOMACH	0.01	0.83	0.052	FALSE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	DHX35--MTHFD1L	2	2	DHX35	15140	chr20:37643577:+	MTHFD1L	63672	chr6:151413603:+	ONLY_REF_SPLICE	YES	83	128	0.05	0.03	0.0208	0.0208	DHX35->DEAH-box_helicase_35,chr20:37590942-37668366:+,MTHFD1L->chr6:151186685-151423023:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_1-like	FU97_STOMACH	0.03	0.05	0.0416	TRUE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	HSPG2--WNT4	2	2	HSPG2	50085	chr1:22157708:-	WNT4	62097	chr1:22456344:-	ONLY_REF_SPLICE	YES	154	0	0.03	1	0.0208	0.0208	HSPG2->Oncogene{Bushman},chr1:22148738-22263790:-,heparan_sulfate_proteoglycan_2,WNT4->Wnt_family_member_4,chr1:22443798-22470462:-	FU97_STOMACH	0.03	1	0.0416	TRUE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	NCAPH2--SELO	2	2	NCAPH2	1230	chr22:50946874:+	SELO	18760	chr22:50654146:+	ONLY_REF_SPLICE	YES	154	94	0.03	0.04	0.0208	0.0208	NCAPH2->chr22:50946645-50961901:+,non-SMC_condensin_II_complex_subunit_H2,SELO->chr22:50639408-50656045:+	FU97_STOMACH	0.03	0.04	0.0416	TRUE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	RP11-6N13.1--CTD-2374C24.1	1	6	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0104	0.0624	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	FU97_STOMACH	1	1	0.0728	TRUE	1	1	0	17	1	FALSE	ACH-000633
FU97_STOMACH	FNDC3B--PLD1	1	5	FNDC3B	6332	chr3:171851336:+	PLD1	49437	chr3:171507491:-	ONLY_REF_SPLICE	YES	734	59	0.01	0.09	0.0104	0.052	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Coronary=1,Esophagus_-_Mucosa=1},FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,PLD1->Oncogene{Bushman},chr3:171318195-171528740:-,phospholipase_D1	FU97_STOMACH	0.01	0.09	0.0624	FALSE	0	2	0	4	1	FALSE	ACH-000633
FU97_STOMACH	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	23013	chrX:10491227:-	ONLY_REF_SPLICE	YES	4	15	0.43	0.17	0.0208	0.0104	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	FU97_STOMACH	0.17	0.43	0.0312	FALSE	0	3	0	6	0	FALSE	ACH-000633
FU97_STOMACH	SF1--FUS	2	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	429	1328	0.01	0	0.0208	0.0104	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	FU97_STOMACH	0	0.01	0.0312	FALSE	5	20	0	32	0	FALSE	ACH-000633
FU97_STOMACH	SLC35E3--NUP107	2	1	SLC35E3	1674	chr12:69140559:+	NUP107	28063	chr12:69109407:+	ONLY_REF_SPLICE	YES	108	271	0.03	0.01	0.0208	0.0104	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[3101],SLC35E3->chr12:69139886-69187508:+,solute_carrier_family_35_member_E3,NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa	FU97_STOMACH	0.01	0.03	0.0312	FALSE	0	0	0	3	0	FALSE	ACH-000633
FU97_STOMACH	YWHAE--CRK	2	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	3791	216	0	0.01	0.0208	0.0104	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	FU97_STOMACH	0	0.01	0.0312	FALSE	6	50	7	115	0	FALSE	ACH-000633
FU97_STOMACH	BRI3BP--UBC	2	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	FU97_STOMACH	1	1	0.0208	TRUE	5	99	5	34	0	FALSE	ACH-000633
FU97_STOMACH	CHD1L--TMEM41B	2	0	CHD1L	6077	chr1:146731572:+	TMEM41B	32385	chr11:9309353:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	CHD1L->chr1:146714291-146767443:+,chromodomain_helicase_DNA_binding_protein_1-like,TMEM41B->chr11:9302201-9336327:-,transmembrane_protein_41B	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	27609	chr13:114193672:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	FU97_STOMACH	1	1	0.0208	TRUE	0	4	1	3	2	TRUE	ACH-000633
FU97_STOMACH	HEG1--SLC12A8	1	4	HEG1	16990	chr3:124709631:-	SLC12A8	49144	chr3:124829179:-	ONLY_REF_SPLICE	YES	171	72	0.03	0.06	0.0104	0.0416	LOCAL_REARRANGEMENT:-:[26678],HEG1->chr3:124684554-124774802:-,heart_development_protein_with_EGF_like_domains_1,SLC12A8->chr3:124801480-124998021:-,solute_carrier_family_12_member_8	FU97_STOMACH	0.03	0.06	0.052	TRUE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	HSPG2--WNT4	2	0	HSPG2	49837	chr1:22157956:-	WNT4	62097	chr1:22456344:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	HSPG2->Oncogene{Bushman},chr1:22148738-22263790:-,heparan_sulfate_proteoglycan_2,WNT4->Wnt_family_member_4,chr1:22443798-22470462:-	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	JPX--ANKS6	2	0	JPX	4177	chrX:73214796:+	ANKS6	18066	chr9:101547158:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	JPX->JPX_transcript,_XIST_activator_(non-protein_coding),chrX:73164159-73290243:+,ANKS6->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_6,chr9:101493611-101559247:-	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	MLLT10--CWC27	2	0	MLLT10	10376	chr10:21884369:+	CWC27	55694	chr5:64313986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,CWC27->CWC27_spliceosome_associated_protein_homolog,chr5:64064757-64314590:+	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	NDUFA4--PHF14	2	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	FU97_STOMACH	1	1	0.0208	TRUE	19	32	3	60	0	FALSE	ACH-000633
FU97_STOMACH	NDUFS1--NBEAL1	2	0	NDUFS1	16037	chr2:206992521:-	NBEAL1	61635	chr2:204000400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	NDUFS1->NADH:ubiquinone_oxidoreductase_core_subunit_S1,chr2:206979541-207024327:-,NBEAL1->chr2:203879602-204091101:+,neurobeachin_like_1	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	PLD1--FNDC3B	2	0	PLD1	1552	chr3:171528189:-	FNDC3B	47799	chr3:171830242:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},PLD1->Oncogene{Bushman},chr3:171318195-171528740:-,phospholipase_D1,FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	2	0	TRUE	ACH-000633
FU97_STOMACH	PSMA1--PDE3B	2	0	PSMA1	2367	chr11:14632512:-	PDE3B	23191	chr11:14793483:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1,PDE3B->chr11:14665269-14892350:+,phosphodiesterase_3B	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	RP11-120D5.1--MID1	1	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	NO	4	3	0.56	0.62	0.0104	0.0416	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	FU97_STOMACH	0.56	0.62	0.052	FALSE	0	23	1	67	0	FALSE	ACH-000633
FU97_STOMACH	SLC12A9--CRYZL1	2	0	SLC12A9	4264	chr7:100452376:+	CRYZL1	38225	chr21:34963517:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	SLC12A9->chr7:100424442-100464631:+,solute_carrier_family_12_member_9,CRYZL1->chr21:34961647-35016232:-,crystallin_zeta_like_1	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	UBE2B--CARS	2	0	UBE2B	2542	chr5:133710154:+	CARS	17425	chr11:3063486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	UBE2B->chr5:133706870-133727683:+,ubiquitin_conjugating_enzyme_E2_B,CARS->Oncogene{Bushman},chr11:3022152-3078843:-,cysteinyl-tRNA_synthetase	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	YME1L1--RAB18	2	0	YME1L1	7416	chr10:27434357:-	RAB18	33873	chr10:27815757:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	YME1L1->YME1_like_1_ATPase,chr10:27399383-27444195:-,RAB18->RAB18,_member_RAS_oncogene_family,chr10:27793197-27831143:+	FU97_STOMACH	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	FMNL3--FAIM2	1	3	FMNL3	2111	chr12:50100838:-	FAIM2	33945	chr12:50295108:-	ONLY_REF_SPLICE	YES	27	0	0.13	1	0.0104	0.0312	FMNL3->Oncogene{Bushman},chr12:50031724-50101948:-,formin_like_3,FAIM2->Fas_apoptotic_inhibitory_molecule_2,chr12:50260679-50298000:-	FU97_STOMACH	0.13	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	TRMT112--PRDX5	1	3	TRMT112	1636	chr11:64084921:-	PRDX5	7852	chr11:64088133:+	ONLY_REF_SPLICE	YES	285	1852	0.01	0	0.0104	0.0312	{Klijn_CCL:Stomach=1},LOCAL_INVERSION:-:+:[4],TRMT112->chr11:64083932-64085556:-,tRNA_methyltransferase_11-2_homolog_(S._cerevisiae),PRDX5->chr11:64085560-64089283:+,peroxiredoxin_5	FU97_STOMACH	0	0.01	0.0416	FALSE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	CLSTN1--KMT2D	1	2	CLSTN1	3007	chr1:9833330:-	KMT2D	23805	chr12:49449144:-	ONLY_REF_SPLICE	YES	451	14	0.01	0.18	0.0104	0.0208	CLSTN1->calsyntenin_1,chr1:9789084-9884584:-,KMT2D->ArcherDX_panel,FoundationOne_panel,chr12:49412758-49453557:-,lysine_methyltransferase_2D	FU97_STOMACH	0.01	0.18	0.0312	FALSE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	RP11-141M1.3--STARD13	1	2	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	2	1	0.6	0.0104	0.0208	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	FU97_STOMACH	0.6	1	0.0312	FALSE	141	264	50	91	0	FALSE	ACH-000633
FU97_STOMACH	SHFM1--SLC25A13	1	2	SHFM1	7020	chr7:96324110:-	SLC25A13	29382	chr7:95864229:-	ONLY_REF_SPLICE	YES	1525	455	0	0.01	0.0104	0.0208	GTEx&tcga_normals:2/3694=0.05%,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13	FU97_STOMACH	0	0.01	0.0312	FALSE	0	0	0	2	0	FALSE	ACH-000633
FU97_STOMACH	ATRX--MAGT1	1	1	ATRX	35890	chrX:76812922:-	MAGT1	48542	chrX:77131094:-	ONLY_REF_SPLICE	NO	89	321	0.02	0.01	0.0104	0.0104	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[40159],ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,MAGT1->chrX:77081861-77151090:-,magnesium_transporter_1	FU97_STOMACH	0.01	0.02	0.0208	FALSE	0	0	0	2	0	FALSE	ACH-000633
FU97_STOMACH	C12orf73--NFYB	1	1	C12orf73	1193	chr12:104359294:-	NFYB	18392	chr12:104517201:-	ONLY_REF_SPLICE	NO	3	164	0.4	0.01	0.0104	0.0104	C12orf73->chr12:104343980-104359486:-,chromosome_12_open_reading_frame_73,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	FU97_STOMACH	0.01	0.4	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	CA5A--BANP	1	1	CA5A	1221	chr16:87969915:-	BANP	24920	chr16:88014642:+	ONLY_REF_SPLICE	NO	39	73	0.05	0.03	0.0104	0.0104	LOCAL_INVERSION:-:+:[12715],CA5A->carbonic_anhydrase_5A,chr16:87921625-87970135:-,BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+	FU97_STOMACH	0.03	0.05	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	CCDC127--PDCD6	1	1	CCDC127	2487	chr5:216844:-	PDCD6	26932	chr5:311408:+	ONLY_REF_SPLICE	NO	254	962	0.01	0	0.0104	0.0104	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_INVERSION:-:+:[53406],CCDC127->chr5:196986-218330:-,coiled-coil_domain_containing_127,PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6	FU97_STOMACH	0	0.01	0.0208	FALSE	0	0	0	2	0	FALSE	ACH-000633
FU97_STOMACH	DANCR--GNAS	1	1	DANCR	1530	chr4:53579126:+	GNAS	23130	chr20:57470667:+	ONLY_REF_SPLICE	NO	1856	1132	0	0	0.0104	0.0104	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	FU97_STOMACH	0	0	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	EDEM1--SEPT9	1	1	EDEM1	1669	chr3:5229999:+	SEPT9	28289	chr17:75303223:+	ONLY_REF_SPLICE	YES	46	36	0.04	0.05	0.0104	0.0104	EDEM1->ER_degradation_enhancing_alpha-mannosidase_like_protein_1,chr3:5229331-5261642:+,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	FU97_STOMACH	0.04	0.05	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	FNDC3B--PLD1	1	1	FNDC3B	4171	chr3:171830380:+	PLD1	49603	chr3:171507325:-	ONLY_REF_SPLICE	YES	741	118	0	0.02	0.0104	0.0104	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Coronary=1,Esophagus_-_Mucosa=1},FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,PLD1->Oncogene{Bushman},chr3:171318195-171528740:-,phospholipase_D1	FU97_STOMACH	0	0.02	0.0208	FALSE	0	0	0	2	0	FALSE	ACH-000633
FU97_STOMACH	HMOX2--EFCAB5	1	1	HMOX2	2722	chr16:4526488:+	EFCAB5	19016	chr17:28269258:+	ONLY_REF_SPLICE	YES	19	0	0.1	1	0.0104	0.0104	HMOX2->chr16:4524691-4560348:+,heme_oxygenase_2,EFCAB5->EF-hand_calcium_binding_domain_5,chr17:28256218-28435470:+	FU97_STOMACH	0.1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	PRKAR2A--ARIH2	1	1	PRKAR2A	9359	chr3:48793812:-	ARIH2	29024	chr3:48982569:+	ONLY_REF_SPLICE	YES	116	247	0.02	0.01	0.0104	0.0104	LOCAL_INVERSION:-:+:[70975],PRKAR2A->chr3:48782030-48885279:-,protein_kinase_cAMP-dependent_type_II_regulatory_subunit_alpha,ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+	FU97_STOMACH	0.01	0.02	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	PTBP3--KIAA0368	1	1	PTBP3	1198	chr9:115095750:-	KIAA0368	27893	chr9:114213835:-	ONLY_REF_SPLICE	NO	107	35	0.02	0.05	0.0104	0.0104	PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,KIAA0368->KIAA0368,chr9:114122972-114247025:-	FU97_STOMACH	0.02	0.05	0.0208	TRUE	0	0	0	3	0	FALSE	ACH-000633
FU97_STOMACH	RAB28--ATP13A3	1	1	RAB28	7624	chr4:13378169:-	ATP13A3	50170	chr3:194126845:-	ONLY_REF_SPLICE	YES	91	1116	0.02	0	0.0104	0.0104	RAB28->RAB28,_member_RAS_oncogene_family,chr4:13362978-13485989:-,ATP13A3->ATPase_13A3,chr3:194123401-194219093:-	FU97_STOMACH	0	0.02	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	23013	chrX:10491227:-	ONLY_REF_SPLICE	YES	5	15	0.29	0.12	0.0104	0.0104	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	FU97_STOMACH	0.12	0.29	0.0208	FALSE	0	1	0	2	0	FALSE	ACH-000633
FU97_STOMACH	RPL22--CREM	1	1	RPL22	8153	chr1:6252990:-	CREM	33994	chr10:35500584:+	ONLY_REF_SPLICE	NO	4529	108	0	0.02	0.0104	0.0104	RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	FU97_STOMACH	0	0.02	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000633
FU97_STOMACH	TAMM41--LINC00885	1	1	TAMM41	13768	chr3:11850991:-	LINC00885	22874	chr3:195886771:+	ONLY_REF_SPLICE	YES	29	0	0.06	1	0.0104	0.0104	TAMM41->TAM41_mitochondrial_translocator_assembly_and_maintenance_homolog,chr3:11831916-11888393:-,LINC00885->chr3:195869507-195887761:+,long_intergenic_non-protein_coding_RNA_885	FU97_STOMACH	0.06	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000633
FU97_STOMACH	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0104	0.0104	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	FU97_STOMACH	0.67	1	0.0208	TRUE	62	24	1	171	0	FALSE	ACH-000633
HS688AT_FIBROBLAST	COL1A1--FN1	522	94	COL1A1	12966	chr17:48266809:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	12509	12459	0.05	0.05	6.2278	1.1215	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0.05	0.05	7.3493	TRUE	0	0	0	17	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	FN1--COL1A1	512	7	FN1	36954	chr2:216243980:-	COL1A1	69586	chr17:48264124:-	INCL_NON_REF_SPLICE	YES	20037	9740	0.03	0.05	6.1085	0.0835	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS688AT_FIBROBLAST	0.03	0.05	6.192	TRUE	0	0	0	13	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	149	9	COL1A1	5208	chr17:48274567:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	NO	10106	12459	0.02	0.01	1.7777	0.1074	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0.01	0.02	1.8851	FALSE	0	0	0	9	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	TIMM23B--LINC00843	70	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8351	0.1432	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS688AT_FIBROBLAST	1	1	0.9783	TRUE	508	994	45	981	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	CD63--TGFBI	69	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8232	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS688AT_FIBROBLAST	1	1	0.8232	TRUE	0	0	0	14	0	TRUE	ACH-000306
HS688AT_FIBROBLAST	RP11-680G10.1--GSE1	49	15	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.96	0.5846	0.179	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS688AT_FIBROBLAST	0.96	1	0.7636	TRUE	458	1351	185	561	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	24	106	COL1A1	15543	chr17:48264232:-	FN1	41973	chr2:216269245:-	INCL_NON_REF_SPLICE	YES	11140	14883	0.01	0.01	0.2863	1.2646	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0.01	0.01	1.5509	TRUE	0	0	0	1	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	3	164	COL1A1	14310	chr17:48265465:-	FN1	22230	chr2:216300791:-	INCL_NON_REF_SPLICE	YES	11139	0	0.01	1	0.0358	1.9566	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0.01	1	1.9924	TRUE	0	0	0	7	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	3	151	COL1A1	15361	chr17:48264414:-	FN1	22313	chr2:216300708:-	INCL_NON_REF_SPLICE	YES	11739	50	0.01	0.75	0.0358	1.8015	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0.01	0.75	1.8373	TRUE	0	0	0	2	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	RP11-680G10.1--GSE1	36	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	35	1	0.56	0.4295	0.1074	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS688AT_FIBROBLAST	0.56	1	0.5369	TRUE	465	1949	224	605	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	4	133	COL1A1	17636	chr17:48262139:-	FN1	30946	chr2:216288212:-	INCL_NON_REF_SPLICE	YES	440	15030	0.24	0.01	0.0477	1.5868	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0.01	0.24	1.6345	TRUE	0	0	0	1	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	TIMM23--RP11-464F9.1	37	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4414	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS688AT_FIBROBLAST	1	1	0.4414	TRUE	519	3926	326	965	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	10	92	COL1A1	12718	chr17:48267057:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	13720	12459	0.01	0.01	0.1193	1.0976	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0.01	0.01	1.2169	TRUE	0	0	0	17	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	4	115	COL1A1	12999	chr17:48266776:-	FN1	22236	chr2:216300785:-	INCL_NON_REF_SPLICE	YES	11525	0	0.01	1	0.0477	1.372	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0.01	1	1.4197	TRUE	0	0	0	17	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	EEF1DP3--FRY	30	8	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.3579	0.0954	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS688AT_FIBROBLAST	0.97	1	0.4533	FALSE	20	24	2	21	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	8	79	COL1A1	15650	chr17:48264125:-	FN1	58080	chr2:216243979:-	INCL_NON_REF_SPLICE	YES	9792	20079	0.01	0	0.0954	0.9425	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0	0.01	1.0379	TRUE	0	0	0	18	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	MT-ND6--MT-TE	23	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2744	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS688AT_FIBROBLAST	1	1	0.2744	FALSE	499	1288	110	792	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	5	68	COL1A1	13883	chr17:48265892:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	12269	22394	0.01	0	0.0597	0.8113	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0	0.01	0.871	TRUE	0	0	0	16	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	4	71	COL1A1	14920	chr17:48264855:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	10625	22394	0.01	0	0.0477	0.8471	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0	0.01	0.8948	TRUE	0	0	0	10	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	3	70	COL1A1	13485	chr17:48266290:-	FN1	52399	chr2:216249662:-	INCL_NON_REF_SPLICE	YES	11797	18345	0.01	0	0.0358	0.8351	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0	0.01	0.8709	TRUE	0	0	0	4	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	PRR16--CTD-2334D19.1	19	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	185	0	0.11	1	0.2267	0.0597	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS688AT_FIBROBLAST	0.11	1	0.2864	FALSE	56	216	12	147	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	7	42	COL1A1	12367	chr17:48267408:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	12842	22394	0	0	0.0835	0.5011	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0	0	0.5846	TRUE	0	0	0	13	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	4	52	COL1A1	13456	chr17:48266319:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	11149	22394	0	0	0.0477	0.6204	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0	0	0.6681	TRUE	0	0	0	16	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	KANSL1--ARL17B	15	6	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	20	17	0.51	0.55	0.179	0.0716	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HS688AT_FIBROBLAST	0.51	0.55	0.2506	TRUE	181	1564	124	196	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	10	23	COL1A1	7831	chr17:48271944:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	10930	22394	0	0	0.1193	0.2744	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0	0	0.3937	TRUE	0	0	0	14	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	11	18	COL1A1	13242	chr17:48266533:-	FN1	63801	chr2:216236956:-	INCL_NON_REF_SPLICE	YES	12273	21337	0	0	0.1312	0.2148	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0	0	0.346	TRUE	0	0	0	8	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	3	44	COL1A1	12998	chr17:48266777:-	FN1	61593	chr2:216239966:-	INCL_NON_REF_SPLICE	YES	11574	22966	0	0	0.0358	0.5249	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0	0	0.5607	TRUE	0	0	0	17	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	3	44	COL1A1	12982	chr17:48266793:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	11769	22394	0	0	0.0358	0.5249	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0	0	0.5607	TRUE	0	0	0	17	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	MT-ND6--MT-TE	11	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.1312	0.1312	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS688AT_FIBROBLAST	0.92	1	0.2624	FALSE	499	1288	110	792	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	CTD-2337A12.1--CAST	11	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	56	1	0.18	0.1312	0.0119	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS688AT_FIBROBLAST	0.18	1	0.1431	TRUE	347	1186	183	220	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	RP4-565E6.1--HYDIN	10	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1193	0.0477	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS688AT_FIBROBLAST	1	1	0.167	TRUE	456	1387	91	133	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	3	29	COL1A1	6831	chr17:48272944:-	FN1	22524	chr2:216300497:-	INCL_NON_REF_SPLICE	YES	11321	11739	0	0	0.0358	0.346	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0	0	0.3818	TRUE	0	0	0	13	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	7	12	COL1A1	6258	chr17:48273517:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	12457	22394	0	0	0.0835	0.1432	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0	0	0.2267	TRUE	0	0	0	10	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	6	15	COL1A1	15751	chr17:48264024:-	FN1	65284	chr2:216235130:-	INCL_NON_REF_SPLICE	YES	10409	24625	0	0	0.0716	0.179	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0	0	0.2506	TRUE	0	0	0	7	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL1A1--FN1	4	20	COL1A1	7994	chr17:48271781:-	FN1	62623	chr2:216238134:-	INCL_NON_REF_SPLICE	YES	11868	25265	0	0	0.0477	0.2386	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS688AT_FIBROBLAST	0	0	0.2863	TRUE	0	0	0	8	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	RP1-34H18.1--NAV3	8	4	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0954	0.0477	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HS688AT_FIBROBLAST	1	1	0.1431	TRUE	254	575	65	124	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	VIM--TMSB4X	7	1	VIM	2162	chr10:17271419:+	TMSB4X	13357	chrX:12994379:+	INCL_NON_REF_SPLICE	YES	9193	55	0	0.13	0.0835	0.0119	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS688AT_FIBROBLAST	0	0.13	0.0954	FALSE	0	0	0	15	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	THBS1--VIM	7	0	THBS1	1101	chr15:39873380:+	VIM	23486	chr10:17271402:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0835	0	GTEx&tcga_normals:2/3694=0.05%,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,VIM->chr10:17270258-17279592:+,vimentin	HS688AT_FIBROBLAST	1	1	0.0835	TRUE	0	0	0	1	0	TRUE	ACH-000306
HS688AT_FIBROBLAST	MT-ND6--MT-TE	3	12	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0358	0.1432	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS688AT_FIBROBLAST	0.88	1	0.179	FALSE	499	1288	110	792	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	MT-ND6--MT-TE	5	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0597	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS688AT_FIBROBLAST	1	1	0.0597	FALSE	499	1288	110	792	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	THBS1--VIM	4	4	THBS1	8002	chr15:39880328:+	VIM	23361	chr10:17271277:+	INCL_NON_REF_SPLICE	YES	6430	13	0	0.38	0.0477	0.0477	GTEx&tcga_normals:2/3694=0.05%,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,VIM->chr10:17270258-17279592:+,vimentin	HS688AT_FIBROBLAST	0	0.38	0.0954	FALSE	0	0	0	2	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	FN1--COL1A1	3	7	FN1	17555	chr2:216273120:-	COL1A1	67159	chr17:48266551:-	INCL_NON_REF_SPLICE	YES	15086	12890	0	0	0.0358	0.0835	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS688AT_FIBROBLAST	0	0	0.1193	TRUE	0	0	0	4	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	PRR16--CTD-2334D19.1	3	6	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	65	0	0.12	1	0.0358	0.0716	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS688AT_FIBROBLAST	0.12	1	0.1074	FALSE	21	45	1	60	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	COL8A1--CMSS1	3	5	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	1178	65	0.01	0.11	0.0358	0.0597	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HS688AT_FIBROBLAST	0.01	0.11	0.0955	FALSE	76	19	3	26	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	VIM-AS1--EEF1A1P5	4	1	VIM-AS1	1636	chr10:17271349:-	EEF1A1P5	11149	chr9:135896170:+	INCL_NON_REF_SPLICE	YES	11	3449	0.31	0	0.0477	0.0119	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,EEF1A1P5->chr9:135894816-135896553:+,eukaryotic_translation_elongation_factor_1_alpha_1_pseudogene_5	HS688AT_FIBROBLAST	0	0.31	0.0596	FALSE	0	0	0	1	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	ADIRF-AS1--LGALS1	4	0	ADIRF-AS1	3806	chr10:88728263:-	LGALS1	10029	chr22:38071676:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0	ADIRF-AS1->ADIRF_antisense_RNA_1,chr10:88725102-88731068:-,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	HS688AT_FIBROBLAST	1	1	0.0477	TRUE	0	0	0	5	0	TRUE	ACH-000306
HS688AT_FIBROBLAST	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS688AT_FIBROBLAST	1	1	0.0477	FALSE	499	1288	110	792	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	THBS1--VIM	3	4	THBS1	8009	chr15:39880335:+	VIM	23368	chr10:17271284:+	INCL_NON_REF_SPLICE	YES	6178	13	0	0.35	0.0358	0.0477	GTEx&tcga_normals:2/3694=0.05%,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,VIM->chr10:17270258-17279592:+,vimentin	HS688AT_FIBROBLAST	0	0.35	0.0835	FALSE	0	0	0	2	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	GREM2--FMN2	3	2	GREM2	1266	chr1:240775184:-	FMN2	25043	chr1:240421245:+	ONLY_REF_SPLICE	YES	404	197	0.01	0.02	0.0358	0.0239	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[14384],GREM2->chr1:240652873-240775449:-,gremlin_2,_DAN_family_BMP_antagonist,FMN2->chr1:240177648-240638489:+,formin_2	HS688AT_FIBROBLAST	0.01	0.02	0.0597	FALSE	0	0	1	1	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	VIM--ACTB	3	2	VIM	2195	chr10:17271452:+	ACTB	15620	chr7:5570232:-	INCL_NON_REF_SPLICE	YES	12763	1	0	0.83	0.0358	0.0239	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS688AT_FIBROBLAST	0	0.83	0.0597	FALSE	0	0	0	9	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	C15orf57--CBX3	3	1	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	27	10	0.13	0.29	0.0358	0.0119	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS688AT_FIBROBLAST	0.13	0.29	0.0477	TRUE	267	562	48	632	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	EEF1DP3--FRY	3	1	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	11	1	0.27	0.8	0.0358	0.0119	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS688AT_FIBROBLAST	0.27	0.8	0.0477	FALSE	18	26	2	21	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0358	0.0119	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS688AT_FIBROBLAST	0.8	1	0.0477	FALSE	515	4851	409	746	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	THBS1--VIM	3	1	THBS1	1129	chr15:39873408:+	VIM	23402	chr10:17271318:+	INCL_NON_REF_SPLICE	YES	3267	23	0	0.15	0.0358	0.0119	GTEx&tcga_normals:2/3694=0.05%,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,VIM->chr10:17270258-17279592:+,vimentin	HS688AT_FIBROBLAST	0	0.15	0.0477	FALSE	0	0	0	1	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	THBS1--VIM	3	1	THBS1	1126	chr15:39873405:+	VIM	23475	chr10:17271391:+	INCL_NON_REF_SPLICE	YES	3063	1868	0	0	0.0358	0.0119	GTEx&tcga_normals:2/3694=0.05%,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,VIM->chr10:17270258-17279592:+,vimentin	HS688AT_FIBROBLAST	0	0	0.0477	FALSE	0	0	0	1	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	VIM-AS1--EEF1A1P5	3	1	VIM-AS1	1638	chr10:17271347:-	EEF1A1P5	11151	chr9:135896172:+	INCL_NON_REF_SPLICE	YES	5	3412	0.44	0	0.0358	0.0119	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,EEF1A1P5->chr9:135894816-135896553:+,eukaryotic_translation_elongation_factor_1_alpha_1_pseudogene_5	HS688AT_FIBROBLAST	0	0.44	0.0477	FALSE	0	0	0	1	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	ADIRF-AS1--LGALS1	3	0	ADIRF-AS1	3782	chr10:88728287:-	LGALS1	10007	chr22:38071654:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	ADIRF-AS1->ADIRF_antisense_RNA_1,chr10:88725102-88731068:-,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	HS688AT_FIBROBLAST	1	1	0.0358	TRUE	0	0	0	5	0	TRUE	ACH-000306
HS688AT_FIBROBLAST	PKM--SERPINE1	3	0	PKM	19656	chr15:72491974:-	SERPINE1	23331	chr7:100770440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	HS688AT_FIBROBLAST	1	1	0.0358	TRUE	0	0	0	4	0	TRUE	ACH-000306
HS688AT_FIBROBLAST	UBL3--SLC7A1	3	0	UBL3	2173	chr13:30423649:-	SLC7A1	14036	chr13:30127997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	HS688AT_FIBROBLAST	1	1	0.0358	TRUE	1	5	0	8	1	TRUE	ACH-000306
HS688AT_FIBROBLAST	VIM--TMSB4X	3	0	VIM	2124	chr10:17271381:+	TMSB4X	12219	chrX:12993241:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS688AT_FIBROBLAST	1	1	0.0358	TRUE	0	0	0	3	0	TRUE	ACH-000306
HS688AT_FIBROBLAST	VIM--TMSB4X	3	0	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS688AT_FIBROBLAST	1	1	0.0358	TRUE	0	0	0	15	0	TRUE	ACH-000306
HS688AT_FIBROBLAST	COL8A1--CMSS1	2	3	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	1319	65	0	0.07	0.0239	0.0358	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HS688AT_FIBROBLAST	0	0.07	0.0597	FALSE	38	10	2	29	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	GREM2--FMN2	2	2	GREM2	1266	chr1:240775184:-	FMN2	33221	chr1:240601361:+	ONLY_REF_SPLICE	YES	404	175	0.01	0.02	0.0239	0.0239	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[14384],GREM2->chr1:240652873-240775449:-,gremlin_2,_DAN_family_BMP_antagonist,FMN2->chr1:240177648-240638489:+,formin_2	HS688AT_FIBROBLAST	0.01	0.02	0.0478	FALSE	0	0	0	3	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	CTD-2337A12.1--CAST	2	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	95	1	0.03	0.0239	0.0119	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS688AT_FIBROBLAST	0.03	1	0.0358	TRUE	15	36	8	26	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	EEF1DP3--FRY	2	0	EEF1DP3	3331	chr13:32520318:+	FRY	15903	chr13:32676100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS688AT_FIBROBLAST	1	1	0.0239	FALSE	0	1	0	1	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	9	0	0.31	1	0.0119	0.0358	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS688AT_FIBROBLAST	0.31	1	0.0477	FALSE	164	806	69	479	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	GREM2--FMN2	1	2	GREM2	1266	chr1:240775184:-	FMN2	32169	chr1:240555811:+	ONLY_REF_SPLICE	YES	404	154	0.01	0.02	0.0119	0.0239	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[14384],GREM2->chr1:240652873-240775449:-,gremlin_2,_DAN_family_BMP_antagonist,FMN2->chr1:240177648-240638489:+,formin_2	HS688AT_FIBROBLAST	0.01	0.02	0.0358	FALSE	0	0	0	3	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	NRIP1--AF127936.7	1	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0119	0.0239	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS688AT_FIBROBLAST	1	1	0.0358	FALSE	292	1546	117	613	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0119	0.0239	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS688AT_FIBROBLAST	0.75	1	0.0358	FALSE	407	2205	196	549	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	GALNT2--C1orf198	1	1	GALNT2	2488	chr1:230203153:+	C1orf198	29838	chr1:230979642:-	ONLY_REF_SPLICE	YES	298	551	0.01	0	0.0119	0.0119	{Klijn_CCL:Kidney=1},GALNT2->chr1:230193536-230417870:+,polypeptide_N-acetylgalactosaminyltransferase_2,C1orf198->chr1:230972865-231005335:-,chromosome_1_open_reading_frame_198	HS688AT_FIBROBLAST	0	0.01	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	GALNT2--C1orf198	1	1	GALNT2	2488	chr1:230203153:+	C1orf198	28787	chr1:230991464:-	ONLY_REF_SPLICE	YES	298	620	0.01	0	0.0119	0.0119	{Klijn_CCL:Kidney=1},GALNT2->chr1:230193536-230417870:+,polypeptide_N-acetylgalactosaminyltransferase_2,C1orf198->chr1:230972865-231005335:-,chromosome_1_open_reading_frame_198	HS688AT_FIBROBLAST	0	0.01	0.0238	FALSE	0	0	0	3	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	GRIK2--ASCC3	1	1	GRIK2	19395	chr6:102376507:+	ASCC3	40691	chr6:101253756:-	ONLY_REF_SPLICE	YES	19	19	0.1	0.1	0.0119	0.0119	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},GRIK2->chr6:101846664-102517958:+,glutamate_ionotropic_receptor_kainate_type_subunit_2,ASCC3->activating_signal_cointegrator_1_complex_subunit_3,chr6:100956070-101329248:-	HS688AT_FIBROBLAST	0.1	0.1	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	PODN--GAS6	1	1	PODN	6201	chr1:53537300:+	GAS6	23225	chr13:114549562:-	ONLY_REF_SPLICE	YES	314	1070	0.01	0	0.0119	0.0119	PODN->chr1:53527854-53551174:+,podocan,GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6	HS688AT_FIBROBLAST	0	0.01	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000306
HS688AT_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	1	1	0.67	0.0119	0.0119	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS688AT_FIBROBLAST	0.67	1	0.0238	FALSE	467	2173	244	435	0	FALSE	ACH-000306
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	19626	61	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	5	1	1	149.006	0.4631	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	149.4691	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--AC096579.7	898	582	IGKV5-2	1386	chr2:89197133:+	AC096579.7	7272	chr2:89157199:-	INCL_NON_REF_SPLICE	YES	320	0	0.82	1	6.8179	4.4187	GTEx_FI:{Pancreas=[count:2=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4],Kidney=[count:1=pct:7.1]},LOCAL_INVERSION:+:-:[31095],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,AC096579.7->chr2:89130700-89165653:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	11.2366	TRUE	4	44	2	2	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	684	18	IGH@	95370	chr14:106329408:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1080	0	0.39	1	5.1931	0.1367	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	5.3298	TRUE	0	0	0	3	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--AC096579.7	406	693	IGKV5-2	1465	chr2:89197212:+	AC096579.7	7275	chr2:89157196:-	INCL_NON_REF_SPLICE	YES	67	0	0.94	1	3.0825	5.2614	GTEx_FI:{Pancreas=[count:2=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4],Kidney=[count:1=pct:7.1]},LOCAL_INVERSION:+:-:[31095],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,AC096579.7->chr2:89130700-89165653:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	8.3439	TRUE	4	44	2	2	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	251	7	NCL	6884	chr2:232325380:-	PTMA	22009	chr2:232576646:+	INCL_NON_REF_SPLICE	YES	2004	5196	0.11	0.05	1.9057	0.0531	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.11	1.9588	TRUE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	246	7	NCL	6884	chr2:232325380:-	PTMA	22018	chr2:232576655:+	INCL_NON_REF_SPLICE	YES	2004	4878	0.11	0.05	1.8677	0.0531	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.11	1.9208	TRUE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--IGKJ4	232	24	IGKV5-2	1557	chr2:89197304:+	IGKJ4	4553	chr2:89160435:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.7614	0.1822	GTEx_FI:{Lung=[count:3=pct:1.8],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},HGNC_GENEFAM,LOCAL_INVERSION:+:-:[36314],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.9436	FALSE	8	10	2	1	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	231	7	NCL	6884	chr2:232325380:-	PTMA	21452	chr2:232576089:+	INCL_NON_REF_SPLICE	YES	2004	5326	0.11	0.04	1.7538	0.0531	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.11	1.8069	TRUE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	202	7	NCL	6884	chr2:232325380:-	PTMA	21433	chr2:232576070:+	INCL_NON_REF_SPLICE	YES	2004	5846	0.09	0.03	1.5336	0.0531	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.09	1.5867	TRUE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	161	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2224	0.2278	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.4502	TRUE	508	994	45	981	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A2--PTMA	154	0	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1692	0	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1692	TRUE	0	0	0	10	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--AC096579.7	3	562	IGKV5-2	1384	chr2:89197131:+	AC096579.7	7270	chr2:89157201:-	INCL_NON_REF_SPLICE	YES	324	0	0.64	1	0.0228	4.2669	GTEx_FI:{Pancreas=[count:2=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4],Kidney=[count:1=pct:7.1]},LOCAL_INVERSION:+:-:[31095],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,AC096579.7->chr2:89130700-89165653:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	4.2897	TRUE	4	44	2	2	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	138	7	NCL	6884	chr2:232325380:-	PTMA	22012	chr2:232576649:+	INCL_NON_REF_SPLICE	YES	2004	5052	0.07	0.03	1.0477	0.0531	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.07	1.1008	TRUE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--AC096579.7	4	532	IGKV5-2	1372	chr2:89197119:+	AC096579.7	6254	chr2:89161418:-	INCL_NON_REF_SPLICE	YES	437	0	0.55	1	0.0304	4.0391	GTEx_FI:{Pancreas=[count:2=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4],Kidney=[count:1=pct:7.1]},LOCAL_INVERSION:+:-:[31095],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,AC096579.7->chr2:89130700-89165653:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	4.0695	TRUE	3	11	0	2	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	110	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8352	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8352	TRUE	0	0	0	518	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	96	7	NCL	6884	chr2:232325380:-	PTMA	21443	chr2:232576080:+	INCL_NON_REF_SPLICE	YES	2004	5537	0.05	0.02	0.7289	0.0531	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.782	TRUE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	89	5	NCL	6884	chr2:232325380:-	PTMA	22525	chr2:232577162:+	ONLY_REF_SPLICE	YES	2004	4756	0.04	0.02	0.6757	0.038	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.7137	TRUE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	88	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	188	6	0.32	0.94	0.6681	0.0152	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.94	0.6833	TRUE	519	3926	326	965	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	77	24	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	39	44	0.72	0.7	0.5846	0.1822	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.72	0.7668	TRUE	181	1564	124	196	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	74	18	IGH@	94353	chr14:106330425:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1693	0	0.05	1	0.5618	0.1367	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.6985	TRUE	0	0	0	3	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	74	18	IGH@	94754	chr14:106330024:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1692	0	0.05	1	0.5618	0.1367	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.6985	TRUE	0	0	0	3	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	71	18	IGH@	93161	chr14:106331617:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1696	0	0.05	1	0.5391	0.1367	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.6758	TRUE	0	0	0	3	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	45	7	NCL	6884	chr2:232325380:-	PTMA	22003	chr2:232576640:+	INCL_NON_REF_SPLICE	YES	2004	5248	0.03	0.01	0.3417	0.0531	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.3948	TRUE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP85--C1orf109	38	12	CEP85	8479	chr1:26586293:+	C1orf109	22178	chr1:38156110:-	ONLY_REF_SPLICE	YES	23	19	0.68	0.72	0.2885	0.0911	CEP85->centrosomal_protein_85,chr1:26560691-26605299:+,C1orf109->chr1:38147242-38157914:-,chromosome_1_open_reading_frame_109	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	0.72	0.3796	TRUE	0	0	0	1	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	35	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2657	0.0531	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3188	FALSE	499	1288	110	792	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	33	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2505	0.038	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2885	FALSE	462	80	0	856	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	30	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3201	0	0.01	1	0.2278	0.0228	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.2506	FALSE	13	9	0	364	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	30	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2278	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2278	TRUE	0	0	0	434	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	27	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.205	0.038	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.243	TRUE	477	1352	189	275	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	28	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2126	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2126	TRUE	0	0	0	434	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	86	MT-CO3	1220	chrM:9426:+	MT-ATP6	4919	chrM:8661:+	INCL_NON_REF_SPLICE	NO	92	16	0.5	0.85	0.0456	0.6529	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.85	0.6985	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	10	69	MT-CO3	1220	chrM:9426:+	MT-ATP6	5242	chrM:8984:+	INCL_NON_REF_SPLICE	YES	92	10	0.46	0.89	0.0759	0.5239	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.89	0.5998	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	8	75	MT-CO3	1138	chrM:9344:+	MT-ATP6	4905	chrM:8647:+	INCL_NON_REF_SPLICE	YES	6	4	0.93	0.95	0.0607	0.5694	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.95	0.6301	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	25	7	NCL	6884	chr2:232325380:-	PTMA	22033	chr2:232576670:+	INCL_NON_REF_SPLICE	YES	2004	4871	0.02	0.01	0.1898	0.0531	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.2429	TRUE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	26	2	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	3278	0	0.01	1	0.1974	0.0152	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.2126	TRUE	0	0	0	100	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	10	58	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	0	10	1	0.87	0.0759	0.4404	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	0.5163	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--IGKJ4	23	4	IGKV5-2	1463	chr2:89197210:+	IGKJ4	4552	chr2:89160436:-	INCL_NON_REF_SPLICE	YES	67	0	0.29	1	0.1746	0.0304	GTEx_FI:{Lung=[count:3=pct:1.8],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},HGNC_GENEFAM,LOCAL_INVERSION:+:-:[36314],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.205	FALSE	8	10	2	1	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	66	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	7	8	0.91	0.9	0.0531	0.5011	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.91	0.5542	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	22	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.167	0.0456	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2126	FALSE	499	1288	110	792	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	69	MT-CO3	1123	chrM:9329:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	6	18	0.93	0.8	0.038	0.5239	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.93	0.5619	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	67	MT-CO3	1220	chrM:9426:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	92	9	0.44	0.89	0.0304	0.5087	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.89	0.5391	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	63	MT-CO3	1083	chrM:9289:+	MT-ATP6	5044	chrM:8786:+	INCL_NON_REF_SPLICE	YES	1	19	0.99	0.78	0.0304	0.4783	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.99	0.5087	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	62	MT-CO3	1234	chrM:9440:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	80	5	0.45	0.93	0.0304	0.4707	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.93	0.5011	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--IGKJ4	13	24	IGKV5-2	1553	chr2:89197300:+	IGKJ4	4549	chr2:89160439:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0987	0.1822	GTEx_FI:{Lung=[count:3=pct:1.8],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},HGNC_GENEFAM,LOCAL_INVERSION:+:-:[36314],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2809	FALSE	8	10	2	1	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	17	7	NCL	6884	chr2:232325380:-	PTMA	22021	chr2:232576658:+	INCL_NON_REF_SPLICE	YES	2004	4816	0.01	0	0.1291	0.0531	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1822	TRUE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	17	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3225	0	0.01	1	0.1291	0.0228	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1519	FALSE	13	9	0	364	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	14	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0987	0.1063	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.205	FALSE	499	1288	110	792	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	45	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	NO	1	1	0.98	0.98	0.0304	0.3417	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	0.98	0.3721	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--IGKJ4	14	3	IGKV5-2	1388	chr2:89197135:+	IGKJ4	4553	chr2:89160435:-	INCL_NON_REF_SPLICE	YES	314	0	0.05	1	0.1063	0.0228	GTEx_FI:{Lung=[count:3=pct:1.8],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},HGNC_GENEFAM,LOCAL_INVERSION:+:-:[36314],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.1291	FALSE	8	10	2	1	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	14	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1063	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1063	TRUE	46	1352	75	139	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	13	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0987	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0987	TRUE	0	5	1	24	1	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	11	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	18	0	0.44	1	0.0835	0.0228	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.1063	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	20	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0.1518	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1974	FALSE	499	1288	110	792	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	11	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0835	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0835	TRUE	0	0	0	518	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	27	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0304	0.205	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.2354	FALSE	499	1288	110	792	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0683	0.038	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1063	FALSE	462	80	0	856	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	10	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0759	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0759	TRUE	0	0	0	518	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	27	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.88	0.0228	0.205	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.2278	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	8	7	NCL	6884	chr2:232325380:-	PTMA	21982	chr2:232576619:+	INCL_NON_REF_SPLICE	NO	2004	5609	0.01	0	0.0607	0.0531	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1138	FALSE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	9	1	NCL	6013	chr2:232326251:-	PTMA	22576	chr2:232577213:+	INCL_NON_REF_SPLICE	NO	2926	4947	0	0	0.0683	0.0076	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0759	FALSE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	8	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0607	0.0152	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0759	FALSE	416	2512	207	587	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.13--IGKV2-28	8	0	AC096579.13	1039	chr2:89161037:-	IGKV2-28	9107	chr2:89521489:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0607	0	AC096579.13->chr2:89109984-89161075:-,IGKV2-28->chr2:89521179-89521942:-,immunoglobulin_kappa_variable_2-28	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0607	TRUE	0	3	0	1	1	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNB2L1--MT-CO3	8	0	GNB2L1	4969	chr5:180669214:-	MT-CO3	13345	chrM:9277:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0607	FALSE	0	0	0	4	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNB1	8	0	RCC1	2175	chr1:28834672:+	GNB1	21015	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0607	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0607	TRUE	0	10	0	7	3	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	7	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	6	1	0.68	0.93	0.0456	0.0531	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	0.93	0.0987	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	3	18	IGH@	93981	chr14:106330797:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1693	0	0.01	1	0.0228	0.1367	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1595	TRUE	0	0	0	3	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	14	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0228	0.1063	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1291	FALSE	499	1288	110	792	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	9	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0.0683	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0987	FALSE	499	1288	110	792	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0456	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	7	MT-CO3	1132	chrM:9338:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	7	1	0.61	0.92	0.0304	0.0531	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.92	0.0835	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	4	6	NCL	6878	chr2:232325386:-	PTMA	21973	chr2:232576610:+	INCL_NON_REF_SPLICE	NO	1851	5600	0.01	0	0.0304	0.0456	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.076	FALSE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	1	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.86	0.038	0.0076	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0456	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	1	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0.0076	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0456	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	5	1	NCL	5999	chr2:232326265:-	PTMA	22888	chr2:232577525:+	INCL_NON_REF_SPLICE	NO	2589	5587	0	0	0.038	0.0076	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0456	FALSE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.038	TRUE	0	0	0	434	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	3	7	EEF2	8878	chr19:3977434:-	RPS28	13651	chr19:8386434:+	INCL_NON_REF_SPLICE	NO	2789	0	0	1	0.0228	0.0531	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0759	FALSE	0	0	0	100	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	3	7	NCL	6884	chr2:232325380:-	PTMA	21984	chr2:232576621:+	INCL_NON_REF_SPLICE	NO	2004	5576	0	0	0.0228	0.0531	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0759	FALSE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	3	7	NCL	6883	chr2:232325381:-	PTMA	22014	chr2:232576651:+	INCL_NON_REF_SPLICE	NO	1979	4888	0.01	0	0.0228	0.0531	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0759	FALSE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	3	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0.0531	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0759	TRUE	160	277	29	98	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	1	MT-CO3	1153	chrM:9359:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	23	0	0.18	1	0.0304	0.0076	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.038	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	5	MT-CO3	1393	chrM:9599:+	MT-ATP6	5454	chrM:9196:+	INCL_NON_REF_SPLICE	YES	31	0	0.21	1	0.0228	0.038	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.0608	FALSE	189	492	56	216	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	4	1	NCL	6000	chr2:232326264:-	PTMA	22539	chr2:232577176:+	INCL_NON_REF_SPLICE	NO	2590	4484	0	0	0.0304	0.0076	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.038	FALSE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RERE--MT-ND4	4	1	RERE	34132	chr1:8416251:-	MT-ND4	41393	chrM:11226:+	INCL_NON_REF_SPLICE	YES	102	8066	0.05	0	0.0304	0.0076	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.038	FALSE	1	0	0	5	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	4	0	IGH@	95370	chr14:106329408:-	CASC11	135896	chr8:128715488:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0304	TRUE	0	0	0	2	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABR--NXN	3	3	ABR	10258	chr17:1028518:-	NXN	53249	chr17:729318:-	ONLY_REF_SPLICE	YES	53	5	0.1	0.55	0.0228	0.0228	GTEx&tcga_normals:2/3694=0.05%,{Klijn_CCL:Head-Neck=1},NEIGHBORS[23748],ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,NXN->chr17:702553-883010:-,nucleoredoxin	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.55	0.0456	FALSE	0	1	0	2	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	3	3	NCL	6856	chr2:232325408:-	PTMA	22032	chr2:232576669:+	INCL_NON_REF_SPLICE	YES	1788	4832	0	0	0.0228	0.0228	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0456	FALSE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TL1--MT-RNR2	3	2	MT-TL1	1076	chrM:3305:+	MT-RNR2	5611	chrM:3206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0228	0.0152	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.038	FALSE	7	521	16	32	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	3	2	NCL	6862	chr2:232325402:-	PTMA	22880	chr2:232577517:+	INCL_NON_REF_SPLICE	NO	1807	5699	0	0	0.0228	0.0152	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.038	FALSE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RERE--MT-ND4	3	2	RERE	34149	chr1:8416234:-	MT-ND4	41236	chrM:11069:+	INCL_NON_REF_SPLICE	NO	84	7616	0.06	0	0.0228	0.0152	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.038	FALSE	1	0	0	5	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	3	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0.0152	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.038	TRUE	274	363	69	150	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	3	1	NCL	6011	chr2:232326253:-	PTMA	22577	chr2:232577214:+	INCL_NON_REF_SPLICE	NO	2864	4950	0	0	0.0228	0.0076	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0304	FALSE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	3	1	NCL	5986	chr2:232326278:-	PTMA	22875	chr2:232577512:+	INCL_NON_REF_SPLICE	YES	2465	5938	0	0	0.0228	0.0076	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0304	FALSE	1	0	0	7	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYCBP2--SLAIN1	3	0	MYCBP2	1577	chr13:77900609:-	SLAIN1	99139	chr13:78293667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Coronary=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellum=1},MYCBP2->MYC_binding_protein_2,_E3_ubiquitin_protein_ligase,chr13:77618792-77901185:-,SLAIN1->SLAIN_motif_family_member_1,chr13:78272023-78338377:+	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PABPC1--MT-ATP6	3	0	PABPC1	2011	chr8:101734027:-	MT-ATP6	18885	chrM:9054:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0228	0	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	5	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	56	44	0.1	0.12	0.0076	0.038	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.12	0.0456	TRUE	105	90	7	93	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--FUS	2	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	405	988	0.01	0	0.0152	0.0076	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0228	FALSE	5	20	0	32	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG5--GNB1	2	1	SNHG5	1780	chr6:86387672:-	GNB1	11344	chr1:1770677:-	ONLY_REF_SPLICE	YES	2698	21	0	0.12	0.0152	0.0076	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.12	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0152	0.0076	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0228	TRUE	62	24	1	171	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COA4--SETD6	2	0	COA4	1232	chr11:73587802:-	SETD6	10581	chr16:58551924:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	COA4->chr11:73583712-73588033:-,cytochrome_c_oxidase_assembly_factor_4_homolog,SETD6->SET_domain_containing_6,chr16:58549383-58554431:+	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	0	0	1	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKDC--MCM4	2	0	PRKDC	56276	chr8:48748899:-	MCM4	90076	chr8:48874076:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[2],PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	0	0	1	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNB1	2	0	RCC1	2175	chr1:28834672:+	GNB1	23173	chr1:1756938:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	3	0	1	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF126--DAZAP1	2	0	RNF126	1231	chr19:663047:-	DAZAP1	16223	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	GTEx_FI:{Blood=[count:2=pct:1.1]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Whole_Blood=1},RNF126->chr19:647526-663277:-,ring_finger_protein_126,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	2	0	0	1	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	FALSE	515	4851	409	746	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL5--EXO1	2	0	RPL5	6333	chr1:93303190:+	EXO1	22746	chr1:242030132:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5,EXO1->chr1:242011269-242058450:+,exonuclease_1	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	0	0	1	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3A--PHF14	2	0	RPS3A	3799	chr4:152024231:+	PHF14	32888	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	RPS3A->chr4:152020725-152025804:+,ribosomal_protein_S3A,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	0	0	1	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SND1--IGL@	2	0	SND1	13407	chr7:127347701:+	IGL@	99972	chr22:23237555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1,IGL@->Oncogene{Bushman}	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	0	0	1	0	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--XPO1	2	0	USP34	1120	chr2:61697785:-	XPO1	80582	chr2:61761038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	2	0	4	2	TRUE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP11C--STAG2	1	1	ATP11C	3132	chrX:139014175:-	STAG2	46954	chrX:123155217:+	ONLY_REF_SPLICE	NO	24	93	0.08	0.02	0.0076	0.0076	ATP11C->ATPase_phospholipid_transporting_11C,chrX:138808505-139027435:-,STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.08	0.0152	TRUE	0	0	0	1	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP5I--TAF6	1	1	ATP5I	2036	chr4:667092:-	TAF6	9760	chr7:99711891:-	ONLY_REF_SPLICE	YES	13	69	0.13	0.03	0.0076	0.0076	ATP5I->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_E,chr4:666225-668127:-,TAF6->TATA-box_binding_protein_associated_factor_6,chr7:99704693-99717464:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.13	0.0152	TRUE	0	0	0	1	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--CHMP1A	1	1	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	239	271	0.01	0.01	0.0076	0.0076	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0152	FALSE	95	74	6	34	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM69A--MTF2	1	1	FAM69A	1125	chr1:93426933:-	MTF2	12927	chr1:93575787:+	ONLY_REF_SPLICE	YES	7	147	0.22	0.01	0.0076	0.0076	FAM69A->chr1:93307724-93427057:-,family_with_sequence_similarity_69_member_A,MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.22	0.0152	FALSE	0	0	0	1	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0076	0.0076	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0152	TRUE	16	11	2	20	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP36--PGS1	1	1	USP36	1706	chr17:76836818:-	PGS1	43106	chr17:76410960:+	ONLY_REF_SPLICE	YES	19	40	0.1	0.05	0.0076	0.0076	USP36->chr17:76783463-76837523:-,ubiquitin_specific_peptidase_36,PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.1	0.0152	TRUE	0	0	0	1	0	FALSE	ACH-000162
GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFP90--UBE2D2	1	1	ZFP90	2603	chr16:68567758:+	UBE2D2	21563	chr5:138979957:+	ONLY_REF_SPLICE	YES	11	66	0.15	0.03	0.0076	0.0076	ZFP90->ZFP90_zinc_finger_protein,chr16:68563993-68609975:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	GA10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.15	0.0152	TRUE	0	1	0	1	0	FALSE	ACH-000162
SNU685_ENDOMETRIUM	R3HDM2--CTDSP2	1032	194	R3HDM2	2356	chr12:57789532:-	CTDSP2	34864	chr12:58223379:-	ONLY_REF_SPLICE	YES	6	80	1	0.94	10.7249	2.0161	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,CTDSP2->CTD_small_phosphatase_2,chr12:58213710-58240522:-	SNU685_ENDOMETRIUM	0.94	1	12.741	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	TIMM23B--LINC00843	121	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2575	0.3222	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU685_ENDOMETRIUM	1	1	1.5797	TRUE	508	994	45	981	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	TIMM23--RP11-464F9.1	71	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	291	2	0.2	0.97	0.7379	0.0104	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU685_ENDOMETRIUM	0.2	0.97	0.7483	TRUE	519	3926	326	965	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	LYPLA1--CCDC26	57	43	LYPLA1	2110	chr8:55013468:-	CCDC26	19874	chr8:130411930:-	ONLY_REF_SPLICE	YES	143	0	0.41	1	0.5924	0.4469	LYPLA1->chr8:54958938-55014577:-,lysophospholipase_I,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	SNU685_ENDOMETRIUM	0.41	1	1.0393	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	MT-TA--MT-TC	61	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6339	0.052	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU685_ENDOMETRIUM	1	1	0.6859	FALSE	462	80	0	856	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	R3HDM2--CTDSP2	33	38	R3HDM2	1286	chr12:57824503:-	CTDSP2	34864	chr12:58223379:-	ONLY_REF_SPLICE	YES	2	80	0.97	0.47	0.3429	0.3949	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,CTDSP2->CTD_small_phosphatase_2,chr12:58213710-58240522:-	SNU685_ENDOMETRIUM	0.47	0.97	0.7378	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	FAM60A--CACNA1C	37	18	FAM60A	12639	chr12:31440568:-	CACNA1C	32480	chr12:2659109:+	ONLY_REF_SPLICE	YES	403	3	0.12	0.95	0.3845	0.1871	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,CACNA1C->calcium_voltage-gated_channel_subunit_alpha1_C,chr12:2079952-2802108:+	SNU685_ENDOMETRIUM	0.12	0.95	0.5716	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	FAM60A--CACNA1C	30	24	FAM60A	12639	chr12:31440568:-	CACNA1C	31405	chr12:2656616:+	ONLY_REF_SPLICE	YES	403	7	0.12	0.89	0.3118	0.2494	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,CACNA1C->calcium_voltage-gated_channel_subunit_alpha1_C,chr12:2079952-2802108:+	SNU685_ENDOMETRIUM	0.12	0.89	0.5612	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	ZNF654--HMGB2	34	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3533	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU685_ENDOMETRIUM	1	1	0.3533	TRUE	0	0	0	518	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ND6--MT-TE	23	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.239	0.0208	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU685_ENDOMETRIUM	1	1	0.2598	FALSE	499	1288	110	792	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	LYPLA1--CCDC26	18	16	LYPLA1	2110	chr8:55013468:-	CCDC26	22124	chr8:130365226:-	ONLY_REF_SPLICE	YES	143	1	0.19	0.97	0.1871	0.1663	LYPLA1->chr8:54958938-55014577:-,lysophospholipase_I,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	SNU685_ENDOMETRIUM	0.19	0.97	0.3534	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	RAMP1--NDP	19	7	RAMP1	4311	chr2:238786004:+	NDP	10100	chrX:43818098:-	ONLY_REF_SPLICE	YES	95	0	0.21	1	0.1975	0.0727	RAMP1->Oncogene{Bushman},chr2:238767536-238820756:+,receptor_activity_modifying_protein_1,NDP->Norrie_disease_(pseudoglioma),chrX:43808022-43832750:-	SNU685_ENDOMETRIUM	0.21	1	0.2702	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	RP11-680G10.1--GSE1	19	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	12	1	0.68	0.1975	0.0727	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU685_ENDOMETRIUM	0.68	1	0.2702	TRUE	458	1351	185	561	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-TA--MT-TC	19	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1975	0.052	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU685_ENDOMETRIUM	1	1	0.2495	FALSE	462	80	0	856	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	RP11-123O10.4--GRIP1	17	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.1767	0.0624	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU685_ENDOMETRIUM	0.96	1	0.2391	FALSE	416	2512	207	587	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	CD9--VWF	12	21	CD9	1851	chr12:6309731:+	VWF	15334	chr12:6232362:-	ONLY_REF_SPLICE	YES	198	0	0.14	1	0.1247	0.2182	LOCAL_INVERSION:+:-:[74945],CD9->CD9_molecule,Oncogene{Bushman},chr12:6308881-6347425:+,VWF->chr12:6058040-6233936:-,von_Willebrand_factor	SNU685_ENDOMETRIUM	0.14	1	0.3429	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	LYPLA1--CCDC26	6	44	LYPLA1	2110	chr8:55013468:-	CCDC26	18826	chr8:130492936:-	ONLY_REF_SPLICE	YES	143	0	0.26	1	0.0624	0.4573	LYPLA1->chr8:54958938-55014577:-,lysophospholipase_I,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	SNU685_ENDOMETRIUM	0.26	1	0.5197	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	MT-ND6--MT-TE	16	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1663	0.0208	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU685_ENDOMETRIUM	1	1	0.1871	FALSE	499	1288	110	792	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	BICD1--CASC1	14	5	BICD1	4185	chr12:32369393:+	CASC1	37927	chr12:25276220:-	ONLY_REF_SPLICE	YES	181	2	0.1	0.9	0.1455	0.052	BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,CASC1->cancer_susceptibility_candidate_1,chr12:25261354-25348096:-	SNU685_ENDOMETRIUM	0.1	0.9	0.1975	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	MT-CO3--MT-ATP6	6	32	MT-CO3	1220	chrM:9426:+	MT-ATP6	4919	chrM:8661:+	INCL_NON_REF_SPLICE	YES	6	14	0.86	0.73	0.0624	0.3326	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU685_ENDOMETRIUM	0.73	0.86	0.395	FALSE	189	492	56	216	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ATP6--MT-CO2	13	1	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	48	1	0.23	0.93	0.1351	0.0104	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU685_ENDOMETRIUM	0.23	0.93	0.1455	FALSE	59	21	0	114	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-TA--MT-TC	13	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1351	0.0104	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU685_ENDOMETRIUM	1	1	0.1455	FALSE	462	80	0	856	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-CO3--MT-ATP6	6	28	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	3	55	0.92	0.38	0.0624	0.291	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU685_ENDOMETRIUM	0.38	0.92	0.3534	FALSE	189	492	56	216	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-CO3--MT-ATP6	5	29	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	8	0.92	0.81	0.052	0.3014	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU685_ENDOMETRIUM	0.81	0.92	0.3534	FALSE	189	492	56	216	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ATP6--MT-CO2	11	1	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	48	1	0.2	0.92	0.1143	0.0104	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU685_ENDOMETRIUM	0.2	0.92	0.1247	FALSE	59	21	0	114	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ND6--MT-TE	9	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0935	0.0831	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU685_ENDOMETRIUM	1	1	0.1766	FALSE	499	1288	110	792	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	BCAT1--RP11-382A18.2	9	7	BCAT1	1533	chr12:25101861:-	RP11-382A18.2	27293	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	541	0	0.03	1	0.0935	0.0727	BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-,RP11-382A18.2->chr8:128351519-128404876:+	SNU685_ENDOMETRIUM	0.03	1	0.1662	TRUE	0	0	0	1	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	RP1-34H18.1--NAV3	10	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.1039	0.0208	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SNU685_ENDOMETRIUM	0.92	1	0.1247	TRUE	254	575	65	124	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	HSP90AB1--MT-RNR2	9	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2963	0	0	1	0.0935	0.0208	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU685_ENDOMETRIUM	0	1	0.1143	FALSE	13	9	0	364	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ND6--MT-TE	6	14	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0624	0.1455	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU685_ENDOMETRIUM	1	1	0.2079	FALSE	499	1288	110	792	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	RP11-680G10.1--GSE1	9	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	43	1	0.2	0.0935	0.0208	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU685_ENDOMETRIUM	0.2	1	0.1143	TRUE	465	1949	224	605	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ND6--MT-TE	6	13	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0624	0.1351	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU685_ENDOMETRIUM	1	1	0.1975	FALSE	499	1288	110	792	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ND6--MT-TE	6	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0624	0.1351	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU685_ENDOMETRIUM	1	1	0.1975	FALSE	499	1288	110	792	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	DNM1L--RP11-551L14.1	8	3	DNM1L	2936	chr12:32854496:+	RP11-551L14.1	29163	chr12:31354169:-	ONLY_REF_SPLICE	YES	280	0	0.04	1	0.0831	0.0312	DNM1L->chr12:32832134-32898486:+,dynamin_1-like,RP11-551L14.1->chr12:31264586-31359088:-	SNU685_ENDOMETRIUM	0.04	1	0.1143	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	7	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0727	0.0312	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU685_ENDOMETRIUM	1	1	0.1039	FALSE	515	4851	409	746	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	RPSAP52--HMGA2	7	3	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	4	433	0.71	0.02	0.0727	0.0312	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SNU685_ENDOMETRIUM	0.02	0.71	0.1039	FALSE	0	59	0	125	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	TARBP1--ARID4B	6	7	TARBP1	11795	chr1:234586174:-	ARID4B	40443	chr1:235424067:-	ONLY_REF_SPLICE	YES	77	46	0.14	0.22	0.0624	0.0727	TARBP1->TAR_(HIV-1)_RNA_binding_protein_1,chr1:234527059-234614849:-,ARID4B->AT-rich_interaction_domain_4B,chr1:235294949-235491534:-	SNU685_ENDOMETRIUM	0.14	0.22	0.1351	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	MT-ATP6--MT-CO1	7	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0727	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU685_ENDOMETRIUM	1	1	0.0727	FALSE	183	104	9	328	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	TEX264--ZC3H11A	6	3	TEX264	4694	chr3:51708578:+	ZC3H11A	23132	chr1:203786054:+	ONLY_REF_SPLICE	YES	70	85	0.11	0.1	0.0624	0.0312	TEX264->chr3:51696709-51738339:+,testis_expressed_264,ZC3H11A->chr1:203764782-203823252:+,zinc_finger_CCCH-type_containing_11A	SNU685_ENDOMETRIUM	0.1	0.11	0.0936	TRUE	0	0	0	1	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	HSP90AB1--MT-RNR2	6	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2993	0	0	1	0.0624	0.0208	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU685_ENDOMETRIUM	0	1	0.0832	FALSE	13	9	0	364	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	CELF1--MTCH2	6	1	CELF1	3345	chr11:47574544:-	MTCH2	36767	chr11:47652639:-	ONLY_REF_SPLICE	YES	114	350	0.06	0.02	0.0624	0.0104	YOSHIHARA_TCGA_num_samples[BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[51746],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	SNU685_ENDOMETRIUM	0.02	0.06	0.0728	TRUE	0	0	0	1	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ND1--MT-TL1	3	13	MT-ND1	1341	chrM:3647:+	MT-TL1	5012	chrM:3285:+	INCL_NON_REF_SPLICE	YES	21	0	0.43	1	0.0312	0.1351	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SNU685_ENDOMETRIUM	0.43	1	0.1663	FALSE	210	95	5	49	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0624	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU685_ENDOMETRIUM	1	1	0.0624	FALSE	183	104	9	328	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0624	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU685_ENDOMETRIUM	1	1	0.0624	FALSE	499	1288	110	792	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	BIN1--CYP27C1	5	1	BIN1	1496	chr2:127864436:-	CYP27C1	29288	chr2:127957115:-	ONLY_REF_SPLICE	YES	209	3	0.03	0.67	0.052	0.0104	LOCAL_REARRANGEMENT:-:[76765],BIN1->Oncogene{Bushman},bridging_integrator_1,chr2:127805603-127864931:-,CYP27C1->chr2:127941696-127977654:-,cytochrome_P450_family_27_subfamily_C_member_1	SNU685_ENDOMETRIUM	0.03	0.67	0.0624	TRUE	0	0	0	1	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-CO3--MT-ATP6	5	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	7	0	0.46	1	0.052	0.0104	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU685_ENDOMETRIUM	0.46	1	0.0624	FALSE	189	492	56	216	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ATP6--MT-CO1	3	8	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	5947	23633	0	0	0.0312	0.0831	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU685_ENDOMETRIUM	0	0	0.1143	FALSE	183	104	9	328	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ND1--MT-TL1	3	7	MT-ND1	1162	chrM:3468:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	7	0	0.59	1	0.0312	0.0727	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SNU685_ENDOMETRIUM	0.59	1	0.1039	FALSE	210	95	5	49	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ND5--MT-ND6	4	2	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	2	3700	0.75	0	0.0416	0.0208	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SNU685_ENDOMETRIUM	0	0.75	0.0624	FALSE	26	124	4	93	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-TA--MT-TC	3	5	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0.052	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU685_ENDOMETRIUM	1	1	0.0832	FALSE	462	80	0	856	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	RP11-444D3.1--SOX5	4	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0.0104	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU685_ENDOMETRIUM	1	1	0.052	TRUE	160	277	29	98	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	CTD-2337A12.1--CAST	4	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU685_ENDOMETRIUM	1	1	0.0416	TRUE	347	1186	183	220	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ATP6--MT-CO1	3	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	4739	chrM:5961:+	INCL_NON_REF_SPLICE	YES	11742	4	0	0.64	0.0312	0.0416	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU685_ENDOMETRIUM	0	0.64	0.0728	FALSE	182	97	9	327	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU685_ENDOMETRIUM	1	1	0.0416	FALSE	189	492	56	216	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ND6--MT-TE	3	4	MT-ND6	1111	chrM:14563:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0.0416	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU685_ENDOMETRIUM	1	1	0.0728	FALSE	499	1288	110	792	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ND6--MT-TE	3	4	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0.0416	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU685_ENDOMETRIUM	1	1	0.0728	FALSE	499	1288	110	792	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU685_ENDOMETRIUM	1	1	0.0416	FALSE	499	1288	110	792	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	SCARB1--UBC	4	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU685_ENDOMETRIUM	1	1	0.0416	TRUE	55	66	6	101	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	SLC1A5--MT-ND4L	4	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU685_ENDOMETRIUM	1	1	0.0416	FALSE	0	0	0	189	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	TMSB10--TMSB4X	4	0	TMSB10	1438	chr2:85133186:+	TMSB4X	6247	chrX:12994426:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SNU685_ENDOMETRIUM	1	1	0.0416	TRUE	0	1	0	17	1	TRUE	ACH-000407
SNU685_ENDOMETRIUM	MT-ND1--MT-TL1	3	3	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0.0312	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SNU685_ENDOMETRIUM	1	1	0.0624	FALSE	210	95	5	49	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	HSP90AB1--MT-RNR2	3	2	HSP90AB1	7115	chr6:44220938:+	MT-RNR2	10817	chrM:1690:+	INCL_NON_REF_SPLICE	NO	2253	0	0	1	0.0312	0.0208	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU685_ENDOMETRIUM	0	1	0.052	FALSE	13	9	0	364	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ATP6--MT-CO1	3	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	11070	23889	0	0	0.0312	0.0208	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU685_ENDOMETRIUM	0	0	0.052	FALSE	183	104	9	328	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11742	26471	0	0	0.0312	0.0208	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU685_ENDOMETRIUM	0	0	0.052	FALSE	183	104	9	328	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	BCAT1--TSPAN11	2	5	BCAT1	1533	chr12:25101861:-	TSPAN11	28865	chr12:31106915:+	ONLY_REF_SPLICE	YES	541	51	0.01	0.12	0.0208	0.052	{Klijn_CCL:Ovary=1},BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-,TSPAN11->chr12:31079362-31149534:+,tetraspanin_11	SNU685_ENDOMETRIUM	0.01	0.12	0.0728	FALSE	0	0	0	1	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	DVL1--MMEL1	3	1	DVL1	1455	chr1:1284276:-	MMEL1	15359	chr1:2543643:-	ONLY_REF_SPLICE	YES	88	0	0.04	1	0.0312	0.0104	DVL1->chr1:1270656-1284730:-,dishevelled_segment_polarity_protein_1,MMEL1->chr1:2522078-2564481:-,membrane_metallo-endopeptidase-like_1	SNU685_ENDOMETRIUM	0.04	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5226	chrM:6448:+	INCL_NON_REF_SPLICE	YES	9597	24019	0	0	0.0312	0.0104	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU685_ENDOMETRIUM	0	0	0.0416	FALSE	183	104	9	328	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ATP6--MT-CO2	3	1	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	49	1	0.08	0.8	0.0312	0.0104	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU685_ENDOMETRIUM	0.08	0.8	0.0416	FALSE	59	21	0	114	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ATP6--MT-CO2	3	1	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	44	1	0.08	0.8	0.0312	0.0104	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU685_ENDOMETRIUM	0.08	0.8	0.0416	FALSE	59	21	0	114	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	RP11-444D3.1--SOX5	3	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0.0104	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU685_ENDOMETRIUM	1	1	0.0416	TRUE	477	1352	189	275	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	EEF2--RPS28	3	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SNU685_ENDOMETRIUM	1	1	0.0312	TRUE	0	0	0	100	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	FAM60A--CACNA1C	1	8	FAM60A	12639	chr12:31440568:-	CACNA1C	34194	chr12:2666117:+	ONLY_REF_SPLICE	YES	403	12	0.02	0.43	0.0104	0.0831	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,CACNA1C->calcium_voltage-gated_channel_subunit_alpha1_C,chr12:2079952-2802108:+	SNU685_ENDOMETRIUM	0.02	0.43	0.0935	TRUE	0	0	0	1	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	LINC01036--LINC01037	3	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SNU685_ENDOMETRIUM	1	1	0.0312	FALSE	0	26	0	50	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ATP6--MT-CO2	3	0	MT-ATP6	1138	chrM:8664:+	MT-CO2	4988	chrM:7892:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU685_ENDOMETRIUM	1	1	0.0312	FALSE	59	21	0	114	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU685_ENDOMETRIUM	1	1	0.0312	FALSE	189	492	56	216	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU685_ENDOMETRIUM	1	1	0.0312	FALSE	499	1288	110	792	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	RPS6KB1--VMP1	3	0	RPS6KB1	5427	chr17:57990165:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SNU685_ENDOMETRIUM	1	1	0.0312	TRUE	0	5	0	6	5	TRUE	ACH-000407
SNU685_ENDOMETRIUM	TMSB10--TMSB4X	3	0	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SNU685_ENDOMETRIUM	1	1	0.0312	TRUE	0	1	0	17	1	TRUE	ACH-000407
SNU685_ENDOMETRIUM	NRIP1--AF127936.7	2	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0208	0.0312	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU685_ENDOMETRIUM	0.56	1	0.052	FALSE	125	705	46	456	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	DNM1L--RP11-551L14.1	2	2	DNM1L	2936	chr12:32854496:+	RP11-551L14.1	29819	chr12:31353513:-	ONLY_REF_SPLICE	YES	280	0	0.01	1	0.0208	0.0208	DNM1L->chr12:32832134-32898486:+,dynamin_1-like,RP11-551L14.1->chr12:31264586-31359088:-	SNU685_ENDOMETRIUM	0.01	1	0.0416	FALSE	0	0	0	1	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	NRIP1--AF127936.7	2	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0208	0.0208	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU685_ENDOMETRIUM	0.67	1	0.0416	FALSE	292	1546	117	613	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	BICD1--CASC1	2	1	BICD1	4185	chr12:32369393:+	CASC1	41321	chr12:25267804:-	ONLY_REF_SPLICE	YES	181	6	0.02	0.33	0.0208	0.0104	BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,CASC1->cancer_susceptibility_candidate_1,chr12:25261354-25348096:-	SNU685_ENDOMETRIUM	0.02	0.33	0.0312	TRUE	0	0	0	1	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	MXRA5--PRKX	2	1	MXRA5	4099	chrX:3248059:-	PRKX	27294	chrX:3533933:-	ONLY_REF_SPLICE	YES	160	50	0.02	0.06	0.0208	0.0104	MXRA5->chrX:3226606-3264682:-,matrix-remodelling_associated_5,PRKX->chrX:3522411-3631649:-,protein_kinase,_X-linked	SNU685_ENDOMETRIUM	0.02	0.06	0.0312	TRUE	0	0	0	1	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	TPM2--ACTG1	2	1	TPM2	4592	chr9:35685061:-	ACTG1	14213	chr17:79478652:-	ONLY_REF_SPLICE	YES	978	11078	0	0	0.0208	0.0104	GTEx&tcga_normals:114/3694=3.09%,GTEx:2.09%,GTEx_FI:{Blood_Vessel=[count:158=pct:42.8],Esophagus=[count:132=pct:32.6],Colon=[count:59=pct:30.9],Heart=[count:15=pct:6.0],Prostate=[count:9=pct:14.8],Stomach=[count:8=pct:9.0],Adipose_Tissue=[count:6=pct:2.0],Uterus=[count:4=pct:9.3],Small_Intestine=[count:3=pct:5.5],Vagina=[count:3=pct:5.5],Bladder=[count:2=pct:22.2],Lung=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Breast=[count:1=pct:0.9],_not_provided_=[count:1=pct:100.0],Fallopian_Tube=[count:1=pct:16.7],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=484;pct=5.59%;dist=Artery_-_Tibial=130,Esophagus_-_Muscularis=91,Esophagus_-_Gastroesophageal_Junction=56,Colon_-_Sigmoid=48,Artery_-_Coronary=29,Artery_-_Aorta=28,Colon_-_Transverse=23,Stomach=15,Adipose_-_Subcutaneous=13,Prostate=10,Uterus=8,Esophagus_-_Mucosa=6,Small_Intestine_-_Terminal_Ileum=5,Heart_-_Left_Ventricle=5,Heart_-_Atrial_Appendage=5,Breast_-_Mammary_Tissue=2,Vagina=2,Bladder=2,Ovary=1,Lung=1,Adipose_-_Visceral_(Omentum)=1,Muscle_-_Skeletal=1,Cells_-_Transformed_fibroblasts=1,Fallopian_Tube=1},TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SNU685_ENDOMETRIUM	0	0	0.0312	FALSE	237	57	25	9	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	XRN1--GRK7	2	1	XRN1	15682	chr3:142132977:-	GRK7	54640	chr3:141535556:+	ONLY_REF_SPLICE	YES	56	0	0.05	1	0.0208	0.0104	XRN1->5'-3'_exoribonuclease_1,chr3:142025449-142166904:-,GRK7->G_protein-coupled_receptor_kinase_7,chr3:141496990-141537332:+	SNU685_ENDOMETRIUM	0.05	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	COL16A1--BAI2	2	0	COL16A1	23359	chr1:32140859:-	BAI2	53619	chr1:32210332:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	LOCAL_REARRANGEMENT:-:[22798],COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1,BAI2->chr1:32192718-32230494:-	SNU685_ENDOMETRIUM	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	CSNK2A1--ACACA	2	0	CSNK2A1	3515	chr20:508577:-	ACACA	50344	chr17:35620797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-,ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-	SNU685_ENDOMETRIUM	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	RAMP1--NDP	2	0	RAMP1	1835	chr2:238768370:+	NDP	10100	chrX:43818098:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	RAMP1->Oncogene{Bushman},chr2:238767536-238820756:+,receptor_activity_modifying_protein_1,NDP->Norrie_disease_(pseudoglioma),chrX:43808022-43832750:-	SNU685_ENDOMETRIUM	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	RASA2--LRMP	2	0	RASA2	3392	chr3:141235273:+	LRMP	47715	chr12:25222284:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	SNU685_ENDOMETRIUM	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0104	0.0416	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU685_ENDOMETRIUM	1	1	0.052	FALSE	407	2205	196	549	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0104	0.0416	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU685_ENDOMETRIUM	1	1	0.052	FALSE	467	2173	244	435	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	RPS6KB1--VMP1	2	0	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SNU685_ENDOMETRIUM	1	1	0.0208	TRUE	0	9	0	11	6	TRUE	ACH-000407
SNU685_ENDOMETRIUM	SIL1--DNAJC18	2	0	SIL1	21983	chr5:138356860:-	DNAJC18	43363	chr5:138749961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,DNAJC18->DnaJ_heat_shock_protein_family_(Hsp40)_member_C18,chr5:138744279-138780180:-	SNU685_ENDOMETRIUM	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	TRAF2--COL5A1	2	0	TRAF2	8092	chr9:139794972:+	COL5A1	61169	chr9:137693800:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	TRAF2->TNF_receptor_associated_factor_2,chr9:139776364-139821059:+,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1	SNU685_ENDOMETRIUM	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	12	0	0.25	1	0.0104	0.0312	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU685_ENDOMETRIUM	0.25	1	0.0416	FALSE	164	806	69	479	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	BICD1--CASC1	1	2	BICD1	1710	chr12:32260478:+	CASC1	37927	chr12:25276220:-	ONLY_REF_SPLICE	NO	726	2	0	0.6	0.0104	0.0208	BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,CASC1->cancer_susceptibility_candidate_1,chr12:25261354-25348096:-	SNU685_ENDOMETRIUM	0	0.6	0.0312	FALSE	0	0	0	1	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	KIF26B--SMYD3	1	2	KIF26B	2699	chr1:245319985:+	SMYD3	55692	chr1:246093239:-	ONLY_REF_SPLICE	YES	15	47	0.17	0.06	0.0104	0.0208	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	SNU685_ENDOMETRIUM	0.06	0.17	0.0312	TRUE	0	18	0	6	12	TRUE	ACH-000407
SNU685_ENDOMETRIUM	BACH1--ANTXR2	1	1	BACH1	1190	chr21:30566581:+	ANTXR2	47247	chr4:80899328:-	ONLY_REF_SPLICE	NO	5	44	0.29	0.04	0.0104	0.0104	BACH1->BTB_domain_and_CNC_homolog_1,chr21:30566392-31003071:+,ANTXR2->anthrax_toxin_receptor_2,chr4:80822303-81046608:-	SNU685_ENDOMETRIUM	0.04	0.29	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000407
SNU685_ENDOMETRIUM	COL5A1--RP11-473E2.4	1	1	COL5A1	15885	chr9:137630654:+	RP11-473E2.4	71294	chr9:137436766:+	ONLY_REF_SPLICE	NO	1706	0	0	1	0.0104	0.0104	LOCAL_REARRANGEMENT:+:[96530],COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1,RP11-473E2.4->chr9:137419028-137437090:+	SNU685_ENDOMETRIUM	0	1	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	GTF2F2--LINC00407	1	1	GTF2F2	4445	chr13:45725966:+	LINC00407	18011	chr13:45275056:+	ONLY_REF_SPLICE	YES	145	0	0.01	1	0.0104	0.0104	GTF2F2->chr13:45694650-45858237:+,general_transcription_factor_IIF_subunit_2,LINC00407->chr13:45225948-45275152:+,long_intergenic_non-protein_coding_RNA_407	SNU685_ENDOMETRIUM	0.01	1	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	HRH1--ATG7	1	1	HRH1	2334	chr3:11196240:+	ATG7	19963	chr3:11340160:+	ONLY_REF_SPLICE	YES	1	7	0.67	0.22	0.0104	0.0104	NEIGHBORS[8752],HRH1->chr3:11178779-11305243:+,histamine_receptor_H1,ATG7->autophagy_related_7,chr3:11313995-11599139:+	SNU685_ENDOMETRIUM	0.22	0.67	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000407
SNU685_ENDOMETRIUM	HRH1--ATG7	1	1	HRH1	1307	chr3:11179085:+	ATG7	30333	chr3:11382119:+	ONLY_REF_SPLICE	YES	0	20	1	0.09	0.0104	0.0104	NEIGHBORS[8752],HRH1->chr3:11178779-11305243:+,histamine_receptor_H1,ATG7->autophagy_related_7,chr3:11313995-11599139:+	SNU685_ENDOMETRIUM	0.09	1	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000407
HCC1937_BREAST	RP11-135A1.3--OPA1	372	156	RP11-135A1.3	1086	chr3:193809435:+	OPA1	35749	chr3:193409852:+	ONLY_REF_SPLICE	YES	0	243	1	0.68	4.0289	1.6895	RP11-135A1.3->chr3:193809350-193826963:+,OPA1->OPA1,_mitochondrial_dynamin_like_GTPase,chr3:193310933-193415612:+	HCC1937_BREAST	0.68	1	5.7184	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	TIMM23B--LINC00843	58	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.6282	0.13	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1937_BREAST	0.99	1	0.7582	TRUE	508	994	45	981	0	FALSE	ACH-000223
HCC1937_BREAST	PAWR--RP1-78O14.1	43	12	PAWR	2369	chr12:80083509:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	21	0	0.72	1	0.4657	0.13	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	HCC1937_BREAST	0.72	1	0.5957	FALSE	0	7	0	7	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND4--MT-RNR2	39	4	MT-ND4	1947	chrM:11706:+	MT-RNR2	5392	chrM:1684:+	INCL_NON_REF_SPLICE	NO	10071	0	0	1	0.4224	0.0433	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	1	0.4657	FALSE	13	19	3	21	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND6--MT-TE	36	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3899	0.0108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1937_BREAST	1	1	0.4007	FALSE	499	1288	110	792	0	FALSE	ACH-000223
HCC1937_BREAST	RNF121--SCAF11	32	17	RNF121	3604	chr11:71671937:+	SCAF11	22103	chr12:46357971:-	ONLY_REF_SPLICE	YES	162	84	0.23	0.37	0.3466	0.1841	HGNC_GENEFAM,RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-	HCC1937_BREAST	0.23	0.37	0.5307	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	NFIA--EHF	32	14	NFIA	7204	chr1:61554352:+	EHF	39943	chr11:34673089:+	ONLY_REF_SPLICE	YES	8	185	0.85	0.2	0.3466	0.1516	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},NFIA->chr1:61330931-61928465:+,nuclear_factor_I_A,EHF->ETS_homologous_factor,chr11:34642640-34682604:+	HCC1937_BREAST	0.2	0.85	0.4982	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	TIMM23--RP11-464F9.1	35	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	349	3	0.09	0.92	0.3791	0.0108	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC1937_BREAST	0.09	0.92	0.3899	TRUE	519	3926	326	965	0	FALSE	ACH-000223
HCC1937_BREAST	GAB1--RP11-364L4.3	29	11	GAB1	1499	chr4:144258413:+	RP11-364L4.3	30578	chr4:144250432:+	ONLY_REF_SPLICE	YES	26	0	0.61	1	0.3141	0.1191	LOCAL_REARRANGEMENT:+:[6904],GAB1->GRB2_associated_binding_protein_1,Oncogene{Bushman},chr4:144257915-144395721:+,RP11-364L4.3->chr4:144207446-144251011:+	HCC1937_BREAST	0.61	1	0.4332	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	RP11-114H23.1--RP11-114H23.2	25	14	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	4	0	0.91	1	0.2708	0.1516	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC1937_BREAST	0.91	1	0.4224	FALSE	81	155	12	160	0	FALSE	ACH-000223
HCC1937_BREAST	HSP90AB1--MT-RNR2	27	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2693	0	0.01	1	0.2924	0.0108	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0.01	1	0.3032	FALSE	13	9	0	364	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO2	26	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	51	9	0.35	0.76	0.2816	0.0217	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1937_BREAST	0.35	0.76	0.3033	FALSE	59	21	0	114	0	FALSE	ACH-000223
HCC1937_BREAST	HSP90AB1--MT-RNR2	24	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2717	0	0.01	1	0.2599	0.0108	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0.01	1	0.2707	FALSE	13	9	0	364	0	FALSE	ACH-000223
HCC1937_BREAST	C15orf57--CBX3	19	19	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	32	39	0.54	0.49	0.2058	0.2058	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1937_BREAST	0.49	0.54	0.4116	TRUE	267	562	48	632	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND4--MT-ATP8	20	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2166	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1937_BREAST	1	1	0.2166	FALSE	230	193	14	283	0	FALSE	ACH-000223
HCC1937_BREAST	RP11-680G10.1--GSE1	18	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	52	1	0.33	0.1949	0.0866	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1937_BREAST	0.33	1	0.2815	TRUE	465	1949	224	605	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	18	2	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	10161	14696	0	0	0.1949	0.0217	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	0	0.2166	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	NRIP1--AF127936.7	16	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	1	0.67	0.95	0.1733	0.0217	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1937_BREAST	0.67	0.95	0.195	FALSE	292	1546	117	613	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO2	14	1	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	52	8	0.22	0.65	0.1516	0.0108	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1937_BREAST	0.22	0.65	0.1624	FALSE	59	21	0	114	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	13	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1408	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	1	1	0.1408	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO2	12	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	41	8	0.24	0.62	0.13	0.0108	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1937_BREAST	0.24	0.62	0.1408	FALSE	59	21	0	114	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND6--MT-TE	9	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0975	0.1408	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1937_BREAST	1	1	0.2383	FALSE	499	1288	110	792	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	11	4	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	10141	14665	0	0	0.1191	0.0433	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	0	0.1624	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	10	6	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	10523	0	0	1	0.1083	0.065	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	1	0.1733	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1191	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1937_BREAST	1	1	0.1191	TRUE	0	0	0	434	0	FALSE	ACH-000223
HCC1937_BREAST	RP11-114H23.1--RP11-114H23.2	8	12	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	4	0	0.83	1	0.0866	0.13	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC1937_BREAST	0.83	1	0.2166	FALSE	81	155	12	160	0	FALSE	ACH-000223
HCC1937_BREAST	RP11-96H19.1--RP11-446N19.1	9	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.92	0.86	0.0975	0.0325	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1937_BREAST	0.86	0.92	0.13	FALSE	515	4851	409	746	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND6--MT-TE	9	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0975	0.0108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1937_BREAST	1	1	0.1083	FALSE	499	1288	110	792	0	FALSE	ACH-000223
HCC1937_BREAST	RP11-123O10.4--GRIP1	9	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0975	0.0108	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1937_BREAST	1	1	0.1083	FALSE	416	2512	207	587	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	8	4	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	10523	14914	0	0	0.0866	0.0433	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	0	0.1299	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	RP11-120D5.1--MID1	9	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0975	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC1937_BREAST	1	1	0.0975	FALSE	16	356	14	466	0	FALSE	ACH-000223
HCC1937_BREAST	C15orf57--CBX3	6	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	32	39	0.35	0.3	0.065	0.1191	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1937_BREAST	0.3	0.35	0.1841	TRUE	267	562	48	632	0	FALSE	ACH-000223
HCC1937_BREAST	NRIP1--AF127936.7	7	7	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	34	1	0.29	0.93	0.0758	0.0758	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1937_BREAST	0.29	0.93	0.1516	FALSE	125	705	46	456	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	8	0	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0866	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	1	1	0.0866	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	NRIP1--AF127936.7	6	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	34	1	0.29	0.93	0.065	0.0866	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1937_BREAST	0.29	0.93	0.1516	FALSE	164	806	69	479	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND4--MT-RNR2	7	3	MT-ND4	1843	chrM:11602:+	MT-RNR2	5709	chrM:2001:+	INCL_NON_REF_SPLICE	YES	9456	14110	0	0	0.0758	0.0325	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	0	0.1083	FALSE	13	19	3	21	0	FALSE	ACH-000223
HCC1937_BREAST	RP11-96H19.1--RP11-446N19.1	6	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.065	0.065	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1937_BREAST	0.92	1	0.13	FALSE	407	2205	196	549	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO2	7	1	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	27	8	0.23	0.5	0.0758	0.0108	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1937_BREAST	0.23	0.5	0.0866	FALSE	59	21	0	114	0	FALSE	ACH-000223
HCC1937_BREAST	FTH1--ACTB	7	0	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0758	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HCC1937_BREAST	1	1	0.0758	TRUE	1	0	0	97	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO1	7	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0758	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1937_BREAST	1	1	0.0758	FALSE	183	104	9	328	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO1	7	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0758	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1937_BREAST	1	1	0.0758	FALSE	183	104	9	328	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND4--MT-RNR2	6	3	MT-ND4	1824	chrM:11583:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	9002	0	0	1	0.065	0.0325	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	1	0.0975	FALSE	13	19	3	21	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO2	6	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	51	8	0.14	0.5	0.065	0.0217	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1937_BREAST	0.14	0.5	0.0867	FALSE	59	21	0	114	0	FALSE	ACH-000223
HCC1937_BREAST	MYO5B--CCDC11	5	6	MYO5B	1327	chr18:47721137:-	CCDC11	57041	chr18:47778154:-	ONLY_REF_SPLICE	YES	6	1	0.65	0.92	0.0542	0.065	LOCAL_REARRANGEMENT:-:[32100],MYO5B->chr18:47349183-47721463:-,myosin_VB,CCDC11->chr18:47753563-47792892:-	HCC1937_BREAST	0.65	0.92	0.1192	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO2	6	1	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	38	8	0.16	0.47	0.065	0.0108	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1937_BREAST	0.16	0.47	0.0758	FALSE	59	21	0	114	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	6	1	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	9354	0	0	1	0.065	0.0108	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	1	0.0758	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	NPM1P24--SET	6	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	27	1403	0.21	0	0.065	0.0108	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1937_BREAST	0	0.21	0.0758	FALSE	0	0	0	434	0	FALSE	ACH-000223
HCC1937_BREAST	UBE2E2--AC092661.1	6	1	UBE2E2	1243	chr3:23244753:+	AC092661.1	22259	chr4:118575962:+	ONLY_REF_SPLICE	YES	32	0	0.18	1	0.065	0.0108	UBE2E2->chr3:23244511-23633284:+,ubiquitin_conjugating_enzyme_E2_E2,AC092661.1->chr4:118349552-118612343:+	HCC1937_BREAST	0.18	1	0.0758	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	6	0	MT-ATP6	1111	chrM:8637:+	MT-RNR2	5402	chrM:2391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	1	1	0.065	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	6	0	MT-ATP6	1110	chrM:8636:+	MT-RNR2	5247	chrM:2236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	1	1	0.065	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND4--MT-RNR2	5	4	MT-ND4	1923	chrM:11682:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	9646	0	0	1	0.0542	0.0433	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	1	0.0975	FALSE	13	19	3	21	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	5	3	MT-ATP6	1158	chrM:8684:+	MT-RNR2	5326	chrM:2315:+	INCL_NON_REF_SPLICE	YES	10869	15905	0	0	0.0542	0.0325	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	0	0.0867	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	4	6	MT-ATP6	1516	chrM:9042:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	YES	5000	14668	0	0	0.0433	0.065	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	0	0.1083	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND4--MT-RNR2	5	2	MT-ND4	1843	chrM:11602:+	MT-RNR2	5933	chrM:2225:+	INCL_NON_REF_SPLICE	YES	9456	15311	0	0	0.0542	0.0217	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	0	0.0759	FALSE	13	19	3	21	0	FALSE	ACH-000223
HCC1937_BREAST	RNF121--SCAF11	1	18	RNF121	4742	chr11:71673335:+	SCAF11	22103	chr12:46357971:-	ONLY_REF_SPLICE	YES	165	84	0.1	0.18	0.0108	0.1949	HGNC_GENEFAM,RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-	HCC1937_BREAST	0.1	0.18	0.2057	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	RP11-114H23.1--RP11-114H23.2	3	9	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	4	4	0.75	0.75	0.0325	0.0975	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC1937_BREAST	0.75	0.75	0.13	FALSE	81	155	12	160	0	FALSE	ACH-000223
HCC1937_BREAST	RP11-680G10.1--GSE1	3	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.57	0.0325	0.0975	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1937_BREAST	0.57	1	0.13	TRUE	458	1351	185	561	0	FALSE	ACH-000223
HCC1937_BREAST	SMG1--MYH14	1	17	SMG1	17623	chr16:18888453:-	MYH14	82466	chr19:50747499:+	ONLY_REF_SPLICE	NO	62	147	0.23	0.11	0.0108	0.1841	SMG1->SMG1_phosphatidylinositol_3-kinase-related_kinase,chr16:18816175-18937776:-,MYH14->chr19:50691443-50813802:+,myosin,_heavy_chain_14,_non-muscle	HCC1937_BREAST	0.11	0.23	0.1949	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	LY6E--S100A6	5	0	LY6E	4687	chr8:144103227:+	S100A6	9963	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HCC1937_BREAST	1	1	0.0542	TRUE	0	0	0	7	0	TRUE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO1	5	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1937_BREAST	1	1	0.0542	FALSE	183	104	9	328	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO1	5	0	MT-ATP6	1132	chrM:8658:+	MT-CO1	5255	chrM:6477:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1937_BREAST	1	1	0.0542	FALSE	183	104	9	328	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	1	1	0.0542	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1937_BREAST	1	1	0.0542	FALSE	231	217	16	283	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1937_BREAST	1	1	0.0542	FALSE	231	204	14	283	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1937_BREAST	1	1	0.0542	FALSE	231	217	16	283	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1937_BREAST	1	1	0.0542	FALSE	231	205	14	283	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND4--MT-RNR2	5	0	MT-ND4	1212	chrM:10971:+	MT-RNR2	5959	chrM:2251:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	1	1	0.0542	FALSE	13	19	3	21	0	FALSE	ACH-000223
HCC1937_BREAST	KANSL1--LRRC37A	4	2	KANSL1	7536	chr17:44248221:-	LRRC37A	37753	chr17:44377160:+	ONLY_REF_SPLICE	YES	41	6	0.13	0.5	0.0433	0.0217	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	HCC1937_BREAST	0.13	0.5	0.065	TRUE	5	10	0	8	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO2	4	2	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	51	8	0.11	0.43	0.0433	0.0217	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1937_BREAST	0.11	0.43	0.065	FALSE	59	21	0	114	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO2	3	6	MT-ATP6	1575	chrM:9101:+	MT-CO2	4747	chrM:7651:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0.065	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1937_BREAST	1	1	0.0975	FALSE	59	21	0	114	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	3	6	MT-ATP6	1548	chrM:9074:+	MT-RNR2	5251	chrM:2240:+	INCL_NON_REF_SPLICE	YES	3219	15128	0	0	0.0325	0.065	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	0	0.0975	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	4	2	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	10161	14665	0	0	0.0433	0.0217	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	0	0.065	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0325	0.065	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1937_BREAST	0.9	1	0.0975	FALSE	275	511	55	178	0	FALSE	ACH-000223
HCC1937_BREAST	MIR205HG--C9orf3	4	1	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	110	222	0.04	0.02	0.0433	0.0108	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	HCC1937_BREAST	0.02	0.04	0.0541	TRUE	86	303	14	25	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO2	4	1	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	48	9	0.09	0.36	0.0433	0.0108	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1937_BREAST	0.09	0.36	0.0541	FALSE	59	21	0	114	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO2	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	NO	25	8	0.17	0.38	0.0433	0.0108	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1937_BREAST	0.17	0.38	0.0541	FALSE	59	21	0	114	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	3	5	MT-ATP6	1148	chrM:8674:+	MT-RNR2	4731	chrM:1720:+	INCL_NON_REF_SPLICE	NO	10368	0	0	1	0.0325	0.0542	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	1	0.0867	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	FTH1--ACTB	4	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HCC1937_BREAST	1	1	0.0433	TRUE	1	0	0	97	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1937_BREAST	1	1	0.0433	FALSE	183	104	9	328	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO2	4	0	MT-ATP6	1123	chrM:8649:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1937_BREAST	1	1	0.0433	FALSE	59	21	0	114	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	3	4	MT-ATP6	1158	chrM:8684:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	10869	15312	0	0	0.0325	0.0433	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	0	0.0758	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1117	chrM:8643:+	MT-RNR2	4698	chrM:1687:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	1	1	0.0433	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1937_BREAST	1	1	0.0433	FALSE	499	1288	110	792	0	FALSE	ACH-000223
HCC1937_BREAST	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1937_BREAST	1	1	0.0433	TRUE	0	0	0	434	0	FALSE	ACH-000223
HCC1937_BREAST	PAWR--RP1-78O14.1	4	0	PAWR	2369	chr12:80083509:-	RP1-78O14.1	32112	chr12:79735189:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0433	0	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	HCC1937_BREAST	1	1	0.0433	FALSE	0	2	0	3	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO2	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	51	8	0.09	0.38	0.0325	0.0217	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1937_BREAST	0.09	0.38	0.0542	FALSE	59	21	0	114	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1187	chrM:8713:+	MT-RNR2	5449	chrM:2438:+	INCL_NON_REF_SPLICE	YES	11666	14939	0	0	0.0325	0.0217	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	0	0.0542	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND4--MT-RNR2	3	2	MT-ND4	1540	chrM:11299:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	11392	0	0	1	0.0325	0.0217	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	1	0.0542	FALSE	13	19	3	21	0	FALSE	ACH-000223
HCC1937_BREAST	EIF1--PPIA	3	1	EIF1	1107	chr17:39845243:+	PPIA	7809	chr7:44836303:+	INCL_NON_REF_SPLICE	YES	13	0	0.24	1	0.0325	0.0108	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	HCC1937_BREAST	0.24	1	0.0433	TRUE	0	0	0	7	0	TRUE	ACH-000223
HCC1937_BREAST	MT-ND4--MT-RNR2	3	1	MT-ND4	1235	chrM:10994:+	MT-RNR2	5393	chrM:1685:+	INCL_NON_REF_SPLICE	YES	8264	0	0	1	0.0325	0.0108	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	1	0.0433	FALSE	13	19	3	21	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND4--MT-RNR2	3	1	MT-ND4	1455	chrM:11214:+	MT-RNR2	5988	chrM:2280:+	INCL_NON_REF_SPLICE	YES	10890	15048	0	0	0.0325	0.0108	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	0	0.0433	FALSE	13	19	3	21	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND4--MT-RNR2	3	1	MT-ND4	1285	chrM:11044:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	9738	0	0	1	0.0325	0.0108	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	0	1	0.0433	FALSE	13	19	3	21	0	FALSE	ACH-000223
HCC1937_BREAST	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	27	1322	0.13	0	0.0325	0.0108	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1937_BREAST	0	0.13	0.0433	FALSE	0	0	0	434	0	FALSE	ACH-000223
HCC1937_BREAST	USP10--COTL1	3	1	USP10	1134	chr16:84733717:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	18	550	0.18	0.01	0.0325	0.0108	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	HCC1937_BREAST	0.01	0.18	0.0433	FALSE	0	0	0	7	0	FALSE	ACH-000223
HCC1937_BREAST	LY6E--S100A6	3	0	LY6E	4707	chr8:144103247:+	S100A6	10598	chr1:153507832:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HCC1937_BREAST	1	1	0.0325	TRUE	0	0	0	7	0	TRUE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1937_BREAST	1	1	0.0325	FALSE	183	104	9	328	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1133	chrM:8659:+	MT-CO1	5176	chrM:6398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1937_BREAST	1	1	0.0325	FALSE	183	104	9	328	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1937_BREAST	1	1	0.0325	FALSE	183	104	9	328	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	1	1	0.0325	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1126	chrM:8652:+	MT-RNR2	5532	chrM:2521:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1937_BREAST	1	1	0.0325	FALSE	63	17	1	58	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1003	chrM:10762:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1937_BREAST	1	1	0.0325	FALSE	230	189	14	283	0	FALSE	ACH-000223
HCC1937_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1937_BREAST	1	1	0.0325	FALSE	499	1288	110	792	0	FALSE	ACH-000223
HCC1937_BREAST	KANSL1--LRRC37A	2	2	KANSL1	8599	chr17:44230270:-	LRRC37A	37753	chr17:44377160:+	ONLY_REF_SPLICE	YES	45	6	0.08	0.4	0.0217	0.0217	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	HCC1937_BREAST	0.08	0.4	0.0434	TRUE	9	6	1	5	0	FALSE	ACH-000223
HCC1937_BREAST	NFIA--EHF	1	6	NFIA	7204	chr1:61554352:+	EHF	41207	chr11:34678455:+	ONLY_REF_SPLICE	NO	8	197	0.47	0.03	0.0108	0.065	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},NFIA->chr1:61330931-61928465:+,nuclear_factor_I_A,EHF->ETS_homologous_factor,chr11:34642640-34682604:+	HCC1937_BREAST	0.03	0.47	0.0758	TRUE	0	0	0	1	0	FALSE	ACH-000223
HCC1937_BREAST	MYO5B--CCDC11	1	5	MYO5B	1327	chr18:47721137:-	CCDC11	57849	chr18:47777346:-	ONLY_REF_SPLICE	YES	6	2	0.5	0.75	0.0108	0.0542	LOCAL_REARRANGEMENT:-:[32100],MYO5B->chr18:47349183-47721463:-,myosin_VB,CCDC11->chr18:47753563-47792892:-	HCC1937_BREAST	0.5	0.75	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	WNT5B--CPEB1	2	1	WNT5B	2060	chr12:1640116:+	CPEB1	26761	chr15:83296118:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0.0108	WNT5B->Wnt_family_member_5B,chr12:1639057-1756409:+,CPEB1->chr15:83211951-83317612:-,cytoplasmic_polyadenylation_element_binding_protein_1	HCC1937_BREAST	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	CTNNA1--ETF1	2	0	CTNNA1	5795	chr5:138089199:+	ETF1	47262	chr5:137849395:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	LOCAL_INVERSION:+:-:[67667],CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,ETF1->chr5:137841784-137878989:-,eukaryotic_translation_termination_factor_1	HCC1937_BREAST	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	FAM83H-AS1--SHARPIN	2	0	FAM83H-AS1	3722	chr8:144822118:+	SHARPIN	16250	chr8:145158128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	FAM83H-AS1->FAM83H_antisense_RNA_1_(head_to_head),chr8:144816310-144828507:+,SHARPIN->SHANK_associated_RH_domain_interactor,chr8:145153536-145163027:-	HCC1937_BREAST	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	LPP--TPRG1	2	0	LPP	1738	chr3:187871809:+	TPRG1	57427	chr3:188722332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx&tcga_normals:2/3694=0.05%,NEIGHBORS[56543],LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1	HCC1937_BREAST	1	1	0.0217	FALSE	0	0	0	1	0	FALSE	ACH-000223
HCC1937_BREAST	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1937_BREAST	1	1	0.0217	FALSE	25	145	6	90	0	FALSE	ACH-000223
HCC1937_BREAST	NRIP1--AF127936.7	2	0	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1937_BREAST	1	1	0.0217	FALSE	8	57	1	47	0	FALSE	ACH-000223
HCC1937_BREAST	RP11-120D5.1--MID1	2	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC1937_BREAST	1	1	0.0217	FALSE	0	48	1	163	0	FALSE	ACH-000223
HCC1937_BREAST	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	7991	chr5:96856933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HCC1937_BREAST	1	1	0.0217	FALSE	0	1	1	12	0	FALSE	ACH-000223
HCC1937_BREAST	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HCC1937_BREAST	1	1	0.0217	TRUE	4	2	0	28	0	FALSE	ACH-000223
HCC1937_BREAST	RP11-624L4.1--RP11-265N7.1	2	0	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	HCC1937_BREAST	1	1	0.0217	FALSE	0	20	1	20	0	FALSE	ACH-000223
HCC1937_BREAST	TMEM87A--SDHAP1	2	0	TMEM87A	14117	chr15:42528518:-	SDHAP1	45141	chr3:195686957:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	TMEM87A->chr15:42502730-42565861:-,transmembrane_protein_87A,SDHAP1->chr3:195686619-195717189:-,succinate_dehydrogenase_complex_flavoprotein_subunit_A_pseudogene_1	HCC1937_BREAST	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000223
HCC1937_BREAST	SMG1--MYH14	1	3	SMG1	15259	chr16:18890817:-	MYH14	82466	chr19:50747499:+	ONLY_REF_SPLICE	NO	95	147	0.04	0.03	0.0108	0.0325	SMG1->SMG1_phosphatidylinositol_3-kinase-related_kinase,chr16:18816175-18937776:-,MYH14->chr19:50691443-50813802:+,myosin,_heavy_chain_14,_non-muscle	HCC1937_BREAST	0.03	0.04	0.0433	TRUE	0	0	0	1	0	FALSE	ACH-000223
HCC1937_BREAST	LPP--TPRG1	1	2	LPP	1738	chr3:187871809:+	TPRG1	56289	chr3:188718563:+	ONLY_REF_SPLICE	YES	12	0	0.2	1	0.0108	0.0217	GTEx&tcga_normals:2/3694=0.05%,NEIGHBORS[56543],LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1	HCC1937_BREAST	0.2	1	0.0325	FALSE	0	0	0	1	0	FALSE	ACH-000223
HCC1937_BREAST	APLP2--CUL2	1	1	APLP2	21930	chr11:130010378:+	CUL2	43651	chr10:35320547:-	ONLY_REF_SPLICE	NO	1864	141	0	0.01	0.0108	0.0108	APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+,CUL2->chr10:35297479-35379570:-,cullin_2	HCC1937_BREAST	0	0.01	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000223
HCC1937_BREAST	DVL1--AGRN	1	1	DVL1	3547	chr1:1277047:-	AGRN	30059	chr1:989133:+	ONLY_REF_SPLICE	YES	80	421	0.02	0	0.0108	0.0108	DVL1->chr1:1270656-1284730:-,dishevelled_segment_polarity_protein_1,AGRN->agrin,chr1:955503-991496:+	HCC1937_BREAST	0	0.02	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000223
HCC1937_BREAST	FXYD3--LCN2	1	1	FXYD3	8292	chr19:35614212:+	LCN2	12721	chr9:130911762:+	ONLY_REF_SPLICE	YES	1989	4	0	0.33	0.0108	0.0108	FXYD3->FXYD_domain_containing_ion_transport_regulator_3,chr19:35606732-35615228:+,LCN2->chr9:130911350-130915734:+,lipocalin_2	HCC1937_BREAST	0	0.33	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000223
HCC1937_BREAST	MAPK1IP1L--SOCS4	1	1	MAPK1IP1L	1173	chr14:55518521:+	SOCS4	17666	chr14:55509670:+	ONLY_REF_SPLICE	NO	71	29	0.03	0.06	0.0108	0.0108	LOCAL_REARRANGEMENT:+:[2143],MAPK1IP1L->chr14:55518349-55536910:+,mitogen-activated_protein_kinase_1_interacting_protein_1-like,SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4	HCC1937_BREAST	0.03	0.06	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000223
HCC1937_BREAST	NCOR2--UBC	1	1	NCOR2	4706	chr12:124979693:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	91	172	0.02	0.01	0.0108	0.0108	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HCC1937_BREAST	0.01	0.02	0.0216	FALSE	3	3	0	1	0	FALSE	ACH-000223
HCC1937_BREAST	PCMTD1--FUS	1	1	PCMTD1	7395	chr8:52758221:-	FUS	27353	chr16:31199646:+	ONLY_REF_SPLICE	YES	40	605	0.05	0	0.0108	0.0108	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	HCC1937_BREAST	0	0.05	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000223
HCC1937_BREAST	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	68	1	0.03	0.0108	0.0108	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1937_BREAST	0.03	1	0.0216	TRUE	64	13	3	59	0	FALSE	ACH-000223
HCC1937_BREAST	RPS6KB1--VMP1	1	1	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	34	313	0.06	0.01	0.0108	0.0108	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HCC1937_BREAST	0.01	0.06	0.0216	FALSE	0	9	0	11	6	FALSE	ACH-000223
HCC1937_BREAST	RPS6KB1--VMP1	1	1	RPS6KB1	4306	chr17:57987972:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	NO	42	313	0.05	0.01	0.0108	0.0108	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HCC1937_BREAST	0.01	0.05	0.0216	FALSE	0	2	1	6	1	FALSE	ACH-000223
HCC1937_BREAST	RPS6KB1--VMP1	1	1	RPS6KB1	1240	chr17:57970686:+	VMP1	37383	chr17:57895073:+	ONLY_REF_SPLICE	YES	34	123	0.06	0.02	0.0108	0.0108	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HCC1937_BREAST	0.02	0.06	0.0216	TRUE	0	0	0	3	0	FALSE	ACH-000223
HCC1937_BREAST	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	NO	14	0	0.12	1	0.0108	0.0108	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HCC1937_BREAST	0.12	1	0.0216	FALSE	272	151	14	158	0	FALSE	ACH-000223
KLE_ENDOMETRIUM	SRSF5--KIAA0247	335	135	SRSF5	3434	chr14:70233972:+	KIAA0247	14855	chr14:70170112:+	ONLY_REF_SPLICE	YES	149	21	0.76	0.96	4.8149	1.9403	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[11758],SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5,KIAA0247->chr14:70078313-70181859:+	KLE_ENDOMETRIUM	0.76	0.96	6.7552	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	SRSF5--KIAA0247	143	132	SRSF5	3430	chr14:70233968:+	KIAA0247	14855	chr14:70170112:+	ONLY_REF_SPLICE	YES	139	21	0.66	0.93	2.0553	1.8972	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[11758],SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5,KIAA0247->chr14:70078313-70181859:+	KLE_ENDOMETRIUM	0.66	0.93	3.9525	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	SAMD4B--ECH1	43	25	SAMD4B	18609	chr19:39873931:+	ECH1	26131	chr19:39308215:-	ONLY_REF_SPLICE	YES	440	2532	0.13	0.03	0.618	0.3593	{Klijn_CCL:Uterus=1},SAMD4B->chr19:39833036-39876350:+,sterile_alpha_motif_domain_containing_4B,ECH1->chr19:39306062-39322645:-,enoyl-CoA_hydratase_1,_peroxisomal	KLE_ENDOMETRIUM	0.03	0.13	0.9773	TRUE	0	0	0	1	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	TIMM23B--LINC00843	45	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6468	0.1581	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KLE_ENDOMETRIUM	1	1	0.8049	TRUE	508	994	45	981	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	C10orf54--CDH23	40	13	C10orf54	5847	chr10:73515116:-	CDH23	16564	chr10:73199584:+	ONLY_REF_SPLICE	YES	10	0	0.84	1	0.5749	0.1868	{Klijn_CCL:Uterus=1},NEIGHBORS_OVERLAP:-:+:[25939],C10orf54->chr10:73507316-73533255:-,chromosome_10_open_reading_frame_54,CDH23->cadherin-related_23,chr10:73156691-73575702:+	KLE_ENDOMETRIUM	0.84	1	0.7617	FALSE	0	0	0	1	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	MT-TA--MT-TC	42	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6037	0.0575	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KLE_ENDOMETRIUM	1	1	0.6612	FALSE	462	80	0	856	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	PGAP3--GSDMB	37	20	PGAP3	4973	chr17:37840850:-	GSDMB	22558	chr17:38062238:-	ONLY_REF_SPLICE	YES	41	9	0.58	0.86	0.5318	0.2875	{Klijn_CCL:Uterus=1},PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,GSDMB->chr17:38060848-38076107:-,gasdermin_B	KLE_ENDOMETRIUM	0.58	0.86	0.8193	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	SRSF5--KIAA0247	3	139	SRSF5	3559	chr14:70234097:+	KIAA0247	14855	chr14:70170112:+	ONLY_REF_SPLICE	YES	355	21	0.29	0.87	0.0431	1.9978	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[11758],SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5,KIAA0247->chr14:70078313-70181859:+	KLE_ENDOMETRIUM	0.29	0.87	2.0409	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	SRSF5--KIAA0247	2	139	SRSF5	4166	chr14:70234704:+	KIAA0247	14855	chr14:70170112:+	ONLY_REF_SPLICE	YES	360	21	0.28	0.87	0.0287	1.9978	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[11758],SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5,KIAA0247->chr14:70078313-70181859:+	KLE_ENDOMETRIUM	0.28	0.87	2.0265	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	RERE--ENO1	31	8	RERE	1484	chr1:8877219:-	ENO1	42962	chr1:8934976:-	ONLY_REF_SPLICE	YES	3	1974	0.93	0.02	0.4456	0.115	LOCAL_REARRANGEMENT:-:[43359],RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	KLE_ENDOMETRIUM	0.02	0.93	0.5606	TRUE	0	6	0	2	3	TRUE	ACH-000293
KLE_ENDOMETRIUM	RP11-444D3.1--SOX5	25	8	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.3593	0.115	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KLE_ENDOMETRIUM	0.97	1	0.4743	TRUE	477	1352	189	275	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	NPM1P24--SET	25	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3593	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KLE_ENDOMETRIUM	1	1	0.3593	TRUE	0	0	0	434	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	MT-ND6--MT-TE	21	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3018	0.0575	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KLE_ENDOMETRIUM	1	1	0.3593	FALSE	499	1288	110	792	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	TIMM23--RP11-464F9.1	22	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3162	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KLE_ENDOMETRIUM	1	1	0.3162	TRUE	519	3926	326	965	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	SHISA9--U91319.1	16	7	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	8	0	0.74	1	0.23	0.1006	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	KLE_ENDOMETRIUM	0.74	1	0.3306	FALSE	4	37	0	19	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	RP11-123O10.4--GRIP1	12	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1725	0.0575	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KLE_ENDOMETRIUM	1	1	0.23	FALSE	416	2512	207	587	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	MT-ND6--MT-TE	9	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	13	0	0.57	1	0.1294	0.115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KLE_ENDOMETRIUM	0.57	1	0.2444	FALSE	499	1288	110	792	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	PGAP3--GSDMB	6	20	PGAP3	4973	chr17:37840850:-	GSDMB	18619	chr17:38066177:-	ONLY_REF_SPLICE	YES	41	2	0.39	0.93	0.0862	0.2875	{Klijn_CCL:Uterus=1},PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,GSDMB->chr17:38060848-38076107:-,gasdermin_B	KLE_ENDOMETRIUM	0.39	0.93	0.3737	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	MAF--RP11-679B19.2	8	8	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.115	0.115	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	KLE_ENDOMETRIUM	1	1	0.23	TRUE	48	25	3	38	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	PAK4--MT-ND4L	8	4	PAK4	12918	chr19:39669187:+	MT-ND4L	20189	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1683	0	0.01	1	0.115	0.0575	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KLE_ENDOMETRIUM	0.01	1	0.1725	FALSE	0	0	0	7	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	CDH23--FAM110D	8	2	CDH23	47084	chr10:73501678:+	FAM110D	78231	chr1:26487703:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.115	0.0287	{Klijn_CCL:Uterus=1},CDH23->cadherin-related_23,chr10:73156691-73575702:+,FAM110D->chr1:26485511-26489119:+,family_with_sequence_similarity_110_member_D	KLE_ENDOMETRIUM	1	1	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	CTD-2008L17.1--RP11-456O19.2	7	6	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.1006	0.0862	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KLE_ENDOMETRIUM	0.87	1	0.1868	FALSE	20	187	4	79	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	RP11-634B7.4--TRIM58	8	2	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	4	1	0.71	0.115	0.0287	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	KLE_ENDOMETRIUM	0.71	1	0.1437	TRUE	158	633	76	73	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	RP11-120D5.1--MID1	8	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	51	0.64	0.15	0.115	0.0144	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KLE_ENDOMETRIUM	0.15	0.64	0.1294	FALSE	16	356	14	466	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	NRIP1--AF127936.7	8	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.115	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KLE_ENDOMETRIUM	1	1	0.115	FALSE	292	1546	117	613	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	MT-ND6--MT-TE	4	14	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	13	0	0.58	1	0.0575	0.2012	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KLE_ENDOMETRIUM	0.58	1	0.2587	FALSE	499	1288	110	792	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	SRSF5--KIAA0247	1	26	SRSF5	3434	chr14:70233972:+	KIAA0247	16064	chr14:70171321:+	ONLY_REF_SPLICE	NO	149	111	0.15	0.2	0.0144	0.3737	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[11758],SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5,KIAA0247->chr14:70078313-70181859:+	KLE_ENDOMETRIUM	0.15	0.2	0.3881	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	MT-ND6--MT-TE	6	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0.0575	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KLE_ENDOMETRIUM	1	1	0.1437	FALSE	499	1288	110	792	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	CTD-2008L17.1--RP11-456O19.2	6	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0862	0.0431	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KLE_ENDOMETRIUM	0.82	1	0.1293	FALSE	33	240	4	98	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0.0431	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KLE_ENDOMETRIUM	1	1	0.1293	FALSE	462	80	0	856	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	MT-ND6--MT-TE	5	6	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0.0862	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KLE_ENDOMETRIUM	1	1	0.1581	FALSE	499	1288	110	792	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	NSUN4--NCCRP1	5	5	NSUN4	7353	chr1:46812747:+	NCCRP1	16914	chr19:39687551:+	INCL_NON_REF_SPLICE	YES	78	0	0.11	1	0.0719	0.0719	{Klijn_CCL:Uterus=1},NSUN4->NOP2/Sun_RNA_methyltransferase_family_member_4,chr1:46805849-46830824:+,NCCRP1->chr19:39687601-39692524:+,non-specific_cytotoxic_cell_receptor_protein_1_homolog_(zebrafish)	KLE_ENDOMETRIUM	0.11	1	0.1438	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	PGAP3--GSDMB	1	20	PGAP3	4973	chr17:37840850:-	GSDMB	19501	chr17:38065295:-	ONLY_REF_SPLICE	NO	41	3	0.34	0.88	0.0144	0.2875	{Klijn_CCL:Uterus=1},PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,GSDMB->chr17:38060848-38076107:-,gasdermin_B	KLE_ENDOMETRIUM	0.34	0.88	0.3019	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	RP11-680G10.1--GSE1	5	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.46	0.0719	0.0144	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KLE_ENDOMETRIUM	0.46	1	0.0863	TRUE	458	1351	185	561	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	ZC3H7B--RANGAP1	5	1	ZC3H7B	1251	chr22:41697776:+	RANGAP1	36878	chr22:41670731:-	ONLY_REF_SPLICE	YES	142	542	0.04	0.01	0.0719	0.0144	LOCAL_INVERSION:+:-:[15271],ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,RANGAP1->Ran_GTPase_activating_protein_1,chr22:41641615-41682255:-	KLE_ENDOMETRIUM	0.01	0.04	0.0863	FALSE	0	0	0	1	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	CTD-2337A12.1--CAST	5	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0719	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	KLE_ENDOMETRIUM	1	1	0.0719	TRUE	347	1186	183	220	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	ADCY9--ZSCAN32	4	2	ADCY9	3436	chr16:4163751:-	ZSCAN32	31939	chr16:3434941:-	ONLY_REF_SPLICE	YES	4	11	0.6	0.35	0.0575	0.0287	ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,ZSCAN32->chr16:3432085-3451065:-,zinc_finger_and_SCAN_domain_containing_32	KLE_ENDOMETRIUM	0.35	0.6	0.0862	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	C15orf57--CBX3	4	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	18	43	0.25	0.12	0.0575	0.0287	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KLE_ENDOMETRIUM	0.12	0.25	0.0862	TRUE	267	562	48	632	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0575	0.0287	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KLE_ENDOMETRIUM	0.86	0.86	0.0862	FALSE	515	4851	409	746	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	EXOC4--LMTK2	4	1	EXOC4	5516	chr7:132990815:+	LMTK2	50255	chr7:97800853:+	ONLY_REF_SPLICE	YES	8	12	0.38	0.29	0.0575	0.0144	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,LMTK2->chr7:97736197-97838945:+,lemur_tyrosine_kinase_2	KLE_ENDOMETRIUM	0.29	0.38	0.0719	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	NSUN4--NCCRP1	3	5	NSUN4	7353	chr1:46812747:+	NCCRP1	16910	chr19:39687547:+	INCL_NON_REF_SPLICE	YES	78	0	0.09	1	0.0431	0.0719	{Klijn_CCL:Uterus=1},NSUN4->NOP2/Sun_RNA_methyltransferase_family_member_4,chr1:46805849-46830824:+,NCCRP1->chr19:39687601-39692524:+,non-specific_cytotoxic_cell_receptor_protein_1_homolog_(zebrafish)	KLE_ENDOMETRIUM	0.09	1	0.115	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	RERE--ENO1	2	9	RERE	2669	chr1:8852463:-	ENO1	42962	chr1:8934976:-	ONLY_REF_SPLICE	YES	3	1974	0.79	0.01	0.0287	0.1294	LOCAL_REARRANGEMENT:-:[43359],RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	KLE_ENDOMETRIUM	0.01	0.79	0.1581	TRUE	0	2	0	2	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	6	1	0.45	0.0575	0.0144	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KLE_ENDOMETRIUM	0.45	1	0.0719	TRUE	465	1949	224	605	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	AFAP1L2--RP11-1220K2.2	4	0	AFAP1L2	6765	chr10:116091562:-	RP11-1220K2.2	56578	chr7:141883066:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0575	0	AFAP1L2->actin_filament_associated_protein_1_like_2,chr10:116054583-116164515:-,RP11-1220K2.2->chr7:141811549-141922124:+	KLE_ENDOMETRIUM	1	1	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	CTD-2023N9.1--RUNX2	4	0	CTD-2023N9.1	3408	chr5:56792744:+	RUNX2	25854	chr6:45630852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0575	0	CTD-2023N9.1->chr5:56690887-56829251:+,RUNX2->Oncogene{Bushman},chr6:45295894-45632086:+,runt_related_transcription_factor_2	KLE_ENDOMETRIUM	1	1	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	MT-CO1--MT-RNR2	4	0	MT-CO1	1642	chrM:6545:+	MT-RNR2	6082	chrM:2210:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KLE_ENDOMETRIUM	1	1	0.0575	FALSE	44	51	6	21	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	MT-CO1--MT-RNR2	4	0	MT-CO1	1631	chrM:6534:+	MT-RNR2	5579	chrM:1707:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KLE_ENDOMETRIUM	1	1	0.0575	FALSE	44	51	6	21	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KLE_ENDOMETRIUM	1	1	0.0575	FALSE	462	80	0	856	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	RCC1--CTD-2354A18.1	4	0	RCC1	2175	chr1:28834672:+	CTD-2354A18.1	21770	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0575	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CTD-2354A18.1->chr18:70992176-71017113:+	KLE_ENDOMETRIUM	1	1	0.0575	TRUE	0	1	0	7	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	SPINT2--KRT18	4	0	SPINT2	9728	chr19:38782783:+	KRT18	13710	chr12:53343165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0	SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2,KRT18->chr12:53342655-53346685:+,keratin_18	KLE_ENDOMETRIUM	1	1	0.0575	TRUE	0	0	0	2	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	MT-ND5--MT-ND6	3	3	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	2734	1	0	0.0431	0.0431	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	KLE_ENDOMETRIUM	0	1	0.0862	FALSE	26	124	4	93	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	RP11-444D3.1--SOX5	2	7	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.9	0.0287	0.1006	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KLE_ENDOMETRIUM	0.9	1	0.1293	TRUE	274	363	69	150	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	SHISA9--U91319.1	2	7	SHISA9	9974	chr16:13297406:+	U91319.1	21484	chr16:13352190:+	ONLY_REF_SPLICE	YES	8	0	0.53	1	0.0287	0.1006	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	KLE_ENDOMETRIUM	0.53	1	0.1293	FALSE	0	14	0	12	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	PODXL--CTD-2023N9.1	3	1	PODXL	2958	chr7:131241019:-	CTD-2023N9.1	17874	chr5:56789902:+	ONLY_REF_SPLICE	YES	194	0	0.02	1	0.0431	0.0144	PODXL->chr7:131185021-131242976:-,podocalyxin_like,CTD-2023N9.1->chr5:56690887-56829251:+	KLE_ENDOMETRIUM	0.02	1	0.0575	TRUE	0	0	0	1	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	RERE--ENO1	1	9	RERE	24297	chr1:8482787:-	ENO1	42962	chr1:8934976:-	ONLY_REF_SPLICE	YES	78	1974	0.11	0.01	0.0144	0.1294	LOCAL_REARRANGEMENT:-:[43359],RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	KLE_ENDOMETRIUM	0.01	0.11	0.1438	TRUE	0	0	0	1	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	RP1-34H18.1--NAV3	3	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0431	0.0144	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	KLE_ENDOMETRIUM	1	1	0.0575	TRUE	254	575	65	124	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	AC010970.2--RPL13A	3	0	AC010970.2	1597	chrY:10036115:-	RPL13A	6620	chr19:49994036:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	AC010970.2->chrY:10036113-10036711:-,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	KLE_ENDOMETRIUM	1	1	0.0431	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	AP5Z1--EIF3B	3	0	AP5Z1	1135	chr7:4815387:+	EIF3B	27869	chr7:2412308:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0431	0	AP5Z1->adaptor_related_protein_complex_5_zeta_1_subunit,chr7:4815253-4833943:+,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	KLE_ENDOMETRIUM	1	1	0.0431	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	CAPZB--EPHA2	3	0	CAPZB	1137	chr1:19811930:-	EPHA2	31626	chr1:16456063:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,EPHA2->EPH_receptor_A2,Oncogene{Bushman},chr1:16450832-16482582:-	KLE_ENDOMETRIUM	1	1	0.0431	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	MT-CO1--MT-RNR2	3	0	MT-CO1	1653	chrM:6556:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KLE_ENDOMETRIUM	1	1	0.0431	FALSE	44	51	6	21	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	PELI1--VPS54	3	0	PELI1	1374	chr2:64371215:-	VPS54	36709	chr2:64126715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0431	0	NEIGHBORS[73580],PELI1->chr2:64319786-64371588:-,pellino_E3_ubiquitin_protein_ligase_1,VPS54->VPS54,_GARP_complex_subunit,chr2:64119280-64246206:-	KLE_ENDOMETRIUM	1	1	0.0431	FALSE	0	0	0	1	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	RCC1--RHOA	3	0	RCC1	2175	chr1:28834672:+	RHOA	22152	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0431	0	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	KLE_ENDOMETRIUM	1	1	0.0431	TRUE	0	1	0	6	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	RP11-120D5.1--MID1	2	4	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	51	0.75	0.11	0.0287	0.0575	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KLE_ENDOMETRIUM	0.11	0.75	0.0862	FALSE	2	31	0	60	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	WTAPP1--RUVBL1	3	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0431	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	KLE_ENDOMETRIUM	1	1	0.0431	TRUE	9	252	6	66	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	NSUN4--NCCRP1	2	3	NSUN4	7353	chr1:46812747:+	NCCRP1	18056	chr19:39688693:+	ONLY_REF_SPLICE	YES	78	2	0.06	0.71	0.0287	0.0431	{Klijn_CCL:Uterus=1},NSUN4->NOP2/Sun_RNA_methyltransferase_family_member_4,chr1:46805849-46830824:+,NCCRP1->chr19:39687601-39692524:+,non-specific_cytotoxic_cell_receptor_protein_1_homolog_(zebrafish)	KLE_ENDOMETRIUM	0.06	0.71	0.0718	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	PGAP3--GSDMB	1	7	PGAP3	3664	chr17:37842175:-	GSDMB	22558	chr17:38062238:-	ONLY_REF_SPLICE	YES	16	9	0.33	0.47	0.0144	0.1006	{Klijn_CCL:Uterus=1},PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,GSDMB->chr17:38060848-38076107:-,gasdermin_B	KLE_ENDOMETRIUM	0.33	0.47	0.115	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	MAF--RP11-679B19.2	1	6	MAF	2930	chr16:79632682:-	RP11-679B19.2	13121	chr16:79246798:-	ONLY_REF_SPLICE	YES	45	0	0.13	1	0.0144	0.0862	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	KLE_ENDOMETRIUM	0.13	1	0.1006	TRUE	11	11	0	4	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	HIF1A--CTD-2277K2.1	2	1	HIF1A	1327	chr14:62162557:+	CTD-2277K2.1	26514	chr14:62436850:+	ONLY_REF_SPLICE	YES	183	0	0.02	1	0.0287	0.0144	NEIGHBORS[63716],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,CTD-2277K2.1->chr14:62278692-62437037:+	KLE_ENDOMETRIUM	0.02	1	0.0431	FALSE	0	0	0	4	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	PELI1--VPS54	2	1	PELI1	1374	chr2:64371215:-	VPS54	24520	chr2:64176297:-	ONLY_REF_SPLICE	YES	98	21	0.03	0.12	0.0287	0.0144	NEIGHBORS[73580],PELI1->chr2:64319786-64371588:-,pellino_E3_ubiquitin_protein_ligase_1,VPS54->VPS54,_GARP_complex_subunit,chr2:64119280-64246206:-	KLE_ENDOMETRIUM	0.03	0.12	0.0431	FALSE	0	0	0	1	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	PVT1--ANKRD55	2	1	PVT1	8346	chr8:128903244:+	ANKRD55	29956	chr5:55479461:-	ONLY_REF_SPLICE	YES	28	1	0.1	0.75	0.0287	0.0144	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ANKRD55->ankyrin_repeat_domain_55,chr5:55395507-55529186:-	KLE_ENDOMETRIUM	0.1	0.75	0.0431	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	SRSF5--KIAA0247	1	5	SRSF5	3430	chr14:70233968:+	KIAA0247	17203	chr14:70175394:+	ONLY_REF_SPLICE	YES	139	164	0.04	0.04	0.0144	0.0719	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[11758],SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5,KIAA0247->chr14:70078313-70181859:+	KLE_ENDOMETRIUM	0.04	0.04	0.0863	TRUE	0	0	0	1	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	CAPZA2--LENG8	2	0	CAPZA2	3371	chr7:116502704:+	LENG8	36724	chr19:54971946:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,LENG8->chr19:54960065-54973217:+,leukocyte_receptor_cluster_(LRC)_member_8	KLE_ENDOMETRIUM	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	PELI1--RAB1A	2	0	PELI1	1374	chr2:64371215:-	RAB1A	17536	chr2:65331940:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	PELI1->chr2:64319786-64371588:-,pellino_E3_ubiquitin_protein_ligase_1,RAB1A->Oncogene{Bushman},RAB1A,_member_RAS_oncogene_family,chr2:65297835-65357240:-	KLE_ENDOMETRIUM	1	1	0.0287	TRUE	1	1	0	1	1	TRUE	ACH-000293
KLE_ENDOMETRIUM	PLXNA1--COL18A1	2	0	PLXNA1	3377	chr3:126710409:+	COL18A1	37349	chr21:46893809:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	PLXNA1->chr3:126707437-126756235:+,plexin_A1,COL18A1->chr21:46825052-46933634:+,collagen_type_XVIII_alpha_1	KLE_ENDOMETRIUM	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	RORA--ANXA2	2	0	RORA	13827	chr15:60884586:-	ANXA2	53106	chr15:60678285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	KLE_ENDOMETRIUM	1	1	0.0287	FALSE	4	3	0	6	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	SH3PXD2B--LAMTOR4	2	0	SH3PXD2B	3403	chr5:171833281:-	LAMTOR4	25570	chr7:99747122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	SH3PXD2B->SH3_and_PX_domains_2B,chr5:171752185-171881527:-,LAMTOR4->chr7:99746530-99753567:+,late_endosomal/lysosomal_adaptor,_MAPK_and_MTOR_activator_4	KLE_ENDOMETRIUM	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	TLN2--TPM1	2	0	TLN2	1160	chr15:62682884:+	TPM1	85052	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx_FI:{Heart=[count:2=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},TLN2->chr15:62682725-63136830:+,talin_2,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	KLE_ENDOMETRIUM	1	1	0.0287	TRUE	2	1	0	6	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	TMTC1--NCBP2	2	0	TMTC1	14722	chr12:29757111:-	NCBP2	46181	chr3:196663953:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	TMTC1->chr12:29653773-29937692:-,transmembrane_and_tetratricopeptide_repeat_containing_1,NCBP2->chr3:196662273-196669468:-,nuclear_cap_binding_protein_subunit_2	KLE_ENDOMETRIUM	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	ADCY9--ZSCAN32	1	3	ADCY9	3436	chr16:4163751:-	ZSCAN32	27712	chr16:3447744:-	ONLY_REF_SPLICE	YES	4	1	0.5	0.8	0.0144	0.0431	ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-,ZSCAN32->chr16:3432085-3451065:-,zinc_finger_and_SCAN_domain_containing_32	KLE_ENDOMETRIUM	0.5	0.8	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	PELI1--VPS54	1	3	PELI1	6778	chr2:64327532:-	VPS54	15873	chr2:64211153:-	ONLY_REF_SPLICE	YES	160	1	0.02	0.8	0.0144	0.0431	NEIGHBORS[73580],PELI1->chr2:64319786-64371588:-,pellino_E3_ubiquitin_protein_ligase_1,VPS54->VPS54,_GARP_complex_subunit,chr2:64119280-64246206:-	KLE_ENDOMETRIUM	0.02	0.8	0.0575	FALSE	0	0	0	1	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	PGAP3--GSDMB	1	3	PGAP3	4973	chr17:37840850:-	GSDMB	23047	chr17:38061749:-	ONLY_REF_SPLICE	NO	41	17	0.09	0.19	0.0144	0.0431	{Klijn_CCL:Uterus=1},PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,GSDMB->chr17:38060848-38076107:-,gasdermin_B	KLE_ENDOMETRIUM	0.09	0.19	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	1	1	0.75	0.0144	0.0287	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KLE_ENDOMETRIUM	0.75	1	0.0431	FALSE	467	2173	244	435	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0144	0.0287	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KLE_ENDOMETRIUM	0.75	1	0.0431	FALSE	275	511	55	178	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	CCDC102B--CDH19	1	1	CCDC102B	2386	chr18:66383831:+	CDH19	25356	chr18:64239553:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0144	0.0144	CCDC102B->chr18:66382446-66722426:+,coiled-coil_domain_containing_102B,CDH19->cadherin_19,chr18:64168320-64271375:-	KLE_ENDOMETRIUM	0.5	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000293
KLE_ENDOMETRIUM	PELI1--VPS54	1	1	PELI1	1374	chr2:64371215:-	VPS54	15873	chr2:64211153:-	ONLY_REF_SPLICE	YES	98	1	0.02	0.67	0.0144	0.0144	NEIGHBORS[73580],PELI1->chr2:64319786-64371588:-,pellino_E3_ubiquitin_protein_ligase_1,VPS54->VPS54,_GARP_complex_subunit,chr2:64119280-64246206:-	KLE_ENDOMETRIUM	0.02	0.67	0.0288	FALSE	0	0	0	1	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	PELI1--VPS54	1	1	PELI1	1374	chr2:64371215:-	VPS54	27811	chr2:64169695:-	ONLY_REF_SPLICE	YES	98	16	0.02	0.11	0.0144	0.0144	NEIGHBORS[73580],PELI1->chr2:64319786-64371588:-,pellino_E3_ubiquitin_protein_ligase_1,VPS54->VPS54,_GARP_complex_subunit,chr2:64119280-64246206:-	KLE_ENDOMETRIUM	0.02	0.11	0.0288	FALSE	0	0	0	1	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	TULP4--RP11-732M18.3	1	1	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	18	2	0.1	0.5	0.0144	0.0144	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	KLE_ENDOMETRIUM	0.1	0.5	0.0288	TRUE	126	140	6	21	0	FALSE	ACH-000293
KLE_ENDOMETRIUM	ZC3H7B--RANGAP1	1	1	ZC3H7B	1251	chr22:41697776:+	RANGAP1	34450	chr22:41677086:-	ONLY_REF_SPLICE	NO	142	462	0.01	0	0.0144	0.0144	LOCAL_INVERSION:+:-:[15271],ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,RANGAP1->Ran_GTPase_activating_protein_1,chr22:41641615-41682255:-	KLE_ENDOMETRIUM	0	0.01	0.0288	FALSE	0	0	0	1	0	FALSE	ACH-000293
SKNSH_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	133	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.565	0.4001	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKNSH_AUTONOMIC_GANGLIA	1	1	1.9651	TRUE	508	994	45	981	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	87	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	296	1	0.23	0.99	1.0237	0.0353	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKNSH_AUTONOMIC_GANGLIA	0.23	0.99	1.059	TRUE	519	3926	326	965	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	38	21	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	15	1	0.8	0.4471	0.2471	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKNSH_AUTONOMIC_GANGLIA	0.8	1	0.6942	TRUE	458	1351	185	561	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-TA--MT-TC	31	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3648	0.0706	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKNSH_AUTONOMIC_GANGLIA	1	1	0.4354	FALSE	462	80	0	856	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	7	92	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0824	1.0825	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKNSH_AUTONOMIC_GANGLIA	1	1	1.1649	FALSE	344	821	44	306	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	26	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	71	1	0.33	0.3059	0.1059	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKNSH_AUTONOMIC_GANGLIA	0.33	1	0.4118	TRUE	465	1949	224	605	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	4	96	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	NO	3783	0	0.03	1	0.0471	1.1296	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKNSH_AUTONOMIC_GANGLIA	0.03	1	1.1767	FALSE	344	827	44	306	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	RP1-34H18.1--NAV3	25	7	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2942	0.0824	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SKNSH_AUTONOMIC_GANGLIA	1	1	0.3766	TRUE	254	575	65	124	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	EXOC4--PVT1	22	12	EXOC4	9042	chr7:133059756:+	PVT1	63632	chr8:129108764:+	ONLY_REF_SPLICE	YES	91	7	0.27	0.83	0.2589	0.1412	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	SKNSH_AUTONOMIC_GANGLIA	0.27	0.83	0.4001	TRUE	0	0	0	1	0	TRUE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	ZNF654--HMGB2	21	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2471	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKNSH_AUTONOMIC_GANGLIA	1	1	0.2471	TRUE	0	0	0	518	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	17	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2	0.0353	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNSH_AUTONOMIC_GANGLIA	1	1	0.2353	FALSE	499	1288	110	792	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	8	33	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8117	0	0.01	1	0.0941	0.3883	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKNSH_AUTONOMIC_GANGLIA	0.01	1	0.4824	FALSE	328	800	43	304	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	9	22	MT-ND4	1248	chrM:11007:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10	0	0.76	1	0.1059	0.2589	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKNSH_AUTONOMIC_GANGLIA	0.76	1	0.3648	FALSE	344	827	44	306	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	10	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1177	0.0941	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNSH_AUTONOMIC_GANGLIA	1	1	0.2118	FALSE	499	1288	110	792	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	SERPINE1--MT-ND4	10	4	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	4776	10623	0	0	0.1177	0.0471	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SKNSH_AUTONOMIC_GANGLIA	0	0	0.1648	FALSE	1	0	0	29	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	9	4	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	18	0	0.42	1	0.1059	0.0471	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKNSH_AUTONOMIC_GANGLIA	0.42	1	0.153	FALSE	21	45	1	60	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	9	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1059	0.0353	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNSH_AUTONOMIC_GANGLIA	1	1	0.1412	FALSE	499	1288	110	792	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	4	22	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8	0	0.76	1	0.0471	0.2589	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKNSH_AUTONOMIC_GANGLIA	0.76	1	0.306	FALSE	344	826	44	306	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	C15orf57--CBX3	8	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	47	24	0.19	0.31	0.0941	0.0353	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKNSH_AUTONOMIC_GANGLIA	0.19	0.31	0.1294	TRUE	267	562	48	632	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	8	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	67	0	0.14	1	0.0941	0.0353	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKNSH_AUTONOMIC_GANGLIA	0.14	1	0.1294	FALSE	56	216	12	147	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	EXOC4--PVT1	5	14	EXOC4	9042	chr7:133059756:+	PVT1	61334	chr8:129082406:+	ONLY_REF_SPLICE	YES	91	7	0.17	0.73	0.0588	0.1647	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	SKNSH_AUTONOMIC_GANGLIA	0.17	0.73	0.2235	TRUE	0	0	0	1	0	TRUE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ND6--MT-ND5	6	4	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	2205	1	0	0.0706	0.0471	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SKNSH_AUTONOMIC_GANGLIA	0	1	0.1177	FALSE	101	855	57	72	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	PVT1--EXOC4	5	6	PVT1	18060	chr8:129022690:+	EXOC4	39866	chr7:133160082:+	ONLY_REF_SPLICE	YES	8	90	0.58	0.11	0.0588	0.0706	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	SKNSH_AUTONOMIC_GANGLIA	0.11	0.58	0.1294	TRUE	0	0	0	1	0	TRUE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	5	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0588	0.0588	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNSH_AUTONOMIC_GANGLIA	1	1	0.1176	FALSE	499	1288	110	792	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0588	0.0235	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKNSH_AUTONOMIC_GANGLIA	1	1	0.0823	FALSE	515	4851	409	746	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	PODXL--MT-ND4L	5	1	PODXL	8405	chr7:131190729:-	MT-ND4L	16755	chrM:10470:+	INCL_NON_REF_SPLICE	YES	925	0	0.01	1	0.0588	0.0118	PODXL->chr7:131185021-131242976:-,podocalyxin_like,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKNSH_AUTONOMIC_GANGLIA	0.01	1	0.0706	FALSE	0	0	0	5	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ND6--MT-ND5	4	4	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	2059	1	0	0.0471	0.0471	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SKNSH_AUTONOMIC_GANGLIA	0	1	0.0942	FALSE	101	855	57	72	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0588	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKNSH_AUTONOMIC_GANGLIA	1	1	0.0588	FALSE	462	80	0	856	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	4	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7972	15049	0	0	0.0471	0.0353	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKNSH_AUTONOMIC_GANGLIA	0	0	0.0824	FALSE	183	104	9	328	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	4	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9606	14981	0	0	0.0471	0.0353	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKNSH_AUTONOMIC_GANGLIA	0	0	0.0824	FALSE	183	104	9	328	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0471	0.0353	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKNSH_AUTONOMIC_GANGLIA	1	1	0.0824	FALSE	407	2205	196	549	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-TA--MT-TC	3	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0.0706	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKNSH_AUTONOMIC_GANGLIA	1	1	0.1059	FALSE	462	80	0	856	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	AP000525.9--LA16c-60G3.6	4	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SKNSH_AUTONOMIC_GANGLIA	1	1	0.0471	TRUE	0	42	0	133	42	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	EXOC4--PVT1	1	12	EXOC4	9042	chr7:133059756:+	PVT1	63635	chr8:129108767:+	ONLY_REF_SPLICE	YES	91	6	0.12	0.68	0.0118	0.1412	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	SKNSH_AUTONOMIC_GANGLIA	0.12	0.68	0.153	TRUE	0	0	0	1	0	TRUE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	3	4	MT-ATP6	1175	chrM:8701:+	MT-CO1	5205	chrM:6427:+	INCL_NON_REF_SPLICE	YES	10083	13633	0	0	0.0353	0.0471	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKNSH_AUTONOMIC_GANGLIA	0	0	0.0824	FALSE	183	104	9	328	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	PRKCSH--LGALS1	4	0	PRKCSH	11051	chr19:11560150:+	LGALS1	15725	chr22:38071655:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	PRKCSH->chr19:11546109-11561783:+,protein_kinase_C_substrate_80K-H,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	SKNSH_AUTONOMIC_GANGLIA	1	1	0.0471	TRUE	0	0	0	3	0	TRUE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	3	3	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	7950	13427	0	0	0.0353	0.0353	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKNSH_AUTONOMIC_GANGLIA	0	0	0.0706	FALSE	183	104	9	328	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	3	3	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	7821	13739	0	0	0.0353	0.0353	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKNSH_AUTONOMIC_GANGLIA	0	0	0.0706	FALSE	183	104	9	328	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	3	3	MT-ATP6	1123	chrM:8649:+	MT-CO1	5226	chrM:6448:+	INCL_NON_REF_SPLICE	YES	7950	14014	0	0	0.0353	0.0353	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKNSH_AUTONOMIC_GANGLIA	0	0	0.0706	FALSE	183	104	9	328	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	3	3	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7950	14981	0	0	0.0353	0.0353	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKNSH_AUTONOMIC_GANGLIA	0	0	0.0706	FALSE	183	104	9	328	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	3	3	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7754	14981	0	0	0.0353	0.0353	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKNSH_AUTONOMIC_GANGLIA	0	0	0.0706	FALSE	183	104	9	328	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	3	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	67	0	0.08	1	0.0353	0.0353	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKNSH_AUTONOMIC_GANGLIA	0.08	1	0.0706	FALSE	1	13	0	24	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	3	3	PRR16	8644	chr5:120022405:+	CTD-2334D19.1	12267	chr5:120116913:+	INCL_NON_REF_SPLICE	YES	23	0	0.21	1	0.0353	0.0353	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKNSH_AUTONOMIC_GANGLIA	0.21	1	0.0706	FALSE	1	2	0	4	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-CO1--COL3A1	3	1	MT-CO1	1605	chrM:6508:+	COL3A1	28798	chr2:189872273:+	INCL_NON_REF_SPLICE	YES	12957	1744	0	0	0.0353	0.0118	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	SKNSH_AUTONOMIC_GANGLIA	0	0	0.0471	FALSE	0	0	0	12	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	MT-ND6--MT-ND5	3	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SKNSH_AUTONOMIC_GANGLIA	1	1	0.0353	FALSE	101	855	57	72	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	YIPF6--BAZ1B	3	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0353	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	SKNSH_AUTONOMIC_GANGLIA	1	1	0.0353	TRUE	1	23	1	24	8	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	FGFR2--ATE1	2	2	FGFR2	4111	chr10:123353223:-	ATE1	51958	chr10:123503373:-	ONLY_REF_SPLICE	YES	2	35	0.67	0.1	0.0235	0.0235	{Klijn_CCL:Breast=1,Stomach=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,ATE1->arginyltransferase_1,chr10:123499939-123688316:-	SKNSH_AUTONOMIC_GANGLIA	0.1	0.67	0.047	TRUE	0	1	0	1	1	TRUE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	PVT1--EXOC4	2	2	PVT1	10746	chr8:128951922:+	EXOC4	39866	chr7:133160082:+	ONLY_REF_SPLICE	YES	9	90	0.31	0.04	0.0235	0.0235	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	SKNSH_AUTONOMIC_GANGLIA	0.04	0.31	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0235	0.0118	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKNSH_AUTONOMIC_GANGLIA	0.75	1	0.0353	TRUE	477	1352	189	275	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SKNSH_AUTONOMIC_GANGLIA	1	1	0.0235	TRUE	347	1186	183	220	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	1	3	PRR16	3559	chr5:119816988:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	73	0	0.05	1	0.0118	0.0353	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKNSH_AUTONOMIC_GANGLIA	0.05	1	0.0471	FALSE	1	5	0	12	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	PVT1--EXOC4	1	3	PVT1	17334	chr8:129021964:+	EXOC4	39866	chr7:133160082:+	ONLY_REF_SPLICE	YES	8	90	0.33	0.04	0.0118	0.0353	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	SKNSH_AUTONOMIC_GANGLIA	0.04	0.33	0.0471	TRUE	0	0	0	1	0	TRUE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	EXOC4--PVT1	1	2	EXOC4	7867	chr7:133041327:+	PVT1	63632	chr8:129108764:+	ONLY_REF_SPLICE	YES	86	7	0.03	0.3	0.0118	0.0235	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	SKNSH_AUTONOMIC_GANGLIA	0.03	0.3	0.0353	TRUE	0	0	0	1	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0118	0.0235	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKNSH_AUTONOMIC_GANGLIA	1	1	0.0353	FALSE	467	2173	244	435	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	CLMP--PPP3CB	1	1	CLMP	5171	chr11:122953793:-	PPP3CB	13370	chr10:75239275:-	ONLY_REF_SPLICE	YES	199	1	0.01	0.67	0.0118	0.0118	CLMP->CXADR-like_membrane_protein,chr11:122943035-123065989:-,PPP3CB->chr10:75196186-75255782:-,protein_phosphatase_3_catalytic_subunit_beta	SKNSH_AUTONOMIC_GANGLIA	0.01	0.67	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	RP1-34H18.1--RP11-781A6.1	1	1	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0118	0.0118	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	SKNSH_AUTONOMIC_GANGLIA	1	1	0.0236	TRUE	94	160	11	37	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0118	0.0118	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKNSH_AUTONOMIC_GANGLIA	0.67	1	0.0236	TRUE	274	363	69	150	0	FALSE	ACH-000149
SKNSH_AUTONOMIC_GANGLIA	RP11-752G15.6--ANXA2	1	1	RP11-752G15.6	2441	chr15:83423536:+	ANXA2	23931	chr15:60656722:-	ONLY_REF_SPLICE	YES	32	3577	0.06	0	0.0118	0.0118	RP11-752G15.6->chr15:83419316-83425958:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	SKNSH_AUTONOMIC_GANGLIA	0	0.06	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000149
CHP212_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	136	62	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.473	0.6715	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CHP212_AUTONOMIC_GANGLIA	1	1	2.1445	TRUE	508	994	45	981	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	84	10	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	451	23	0.17	0.8	0.9098	0.1083	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CHP212_AUTONOMIC_GANGLIA	0.17	0.8	1.0181	TRUE	519	3926	326	965	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	46	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4982	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHP212_AUTONOMIC_GANGLIA	1	1	0.4982	FALSE	499	1288	110	792	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	36	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.3899	0.0108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHP212_AUTONOMIC_GANGLIA	0.95	1	0.4007	FALSE	499	1288	110	792	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	NPM1P24--SET	27	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2924	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CHP212_AUTONOMIC_GANGLIA	1	1	0.2924	TRUE	0	0	0	434	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	24	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2599	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHP212_AUTONOMIC_GANGLIA	1	1	0.2599	FALSE	499	1288	110	792	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-TA--MT-TC	20	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2166	0.0217	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CHP212_AUTONOMIC_GANGLIA	1	1	0.2383	FALSE	462	80	0	856	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	NIPA2--POLA1	19	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2058	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	CHP212_AUTONOMIC_GANGLIA	1	1	0.2058	TRUE	46	1352	75	139	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	ZNF654--HMGB2	19	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2058	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CHP212_AUTONOMIC_GANGLIA	1	1	0.2058	TRUE	0	0	0	518	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	34	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	14	0	0.73	1	0.0325	0.3683	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHP212_AUTONOMIC_GANGLIA	0.73	1	0.4008	FALSE	344	826	44	306	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	11	2	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	57	0	0.19	1	0.1191	0.0217	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHP212_AUTONOMIC_GANGLIA	0.19	1	0.1408	FALSE	344	827	44	306	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	32	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	7	1	0.83	0.97	0.0325	0.3466	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHP212_AUTONOMIC_GANGLIA	0.83	0.97	0.3791	FALSE	344	826	44	306	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-TA--MT-TC	10	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1083	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CHP212_AUTONOMIC_GANGLIA	1	1	0.1083	FALSE	462	80	0	856	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	25	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	5	1	0.85	0.97	0.0325	0.2708	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHP212_AUTONOMIC_GANGLIA	0.85	0.97	0.3033	FALSE	344	826	44	306	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	9	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0975	0.0108	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CHP212_AUTONOMIC_GANGLIA	0.91	1	0.1083	TRUE	477	1352	189	275	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	4	14	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	1	0.82	0.95	0.0433	0.1516	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHP212_AUTONOMIC_GANGLIA	0.82	0.95	0.1949	FALSE	344	821	44	306	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	7	1	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0758	0.0108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHP212_AUTONOMIC_GANGLIA	0.8	1	0.0866	FALSE	499	1288	110	792	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	14	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	643	0	0.03	1	0.0325	0.1516	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHP212_AUTONOMIC_GANGLIA	0.03	1	0.1841	FALSE	344	827	44	306	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	4	9	MT-ND4	1276	chrM:11035:+	MT-ND4L	5657	chrM:10748:+	INCL_NON_REF_SPLICE	YES	45	0	0.22	1	0.0433	0.0975	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHP212_AUTONOMIC_GANGLIA	0.22	1	0.1408	FALSE	344	827	44	306	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	4	9	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	23	0	0.36	1	0.0433	0.0975	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHP212_AUTONOMIC_GANGLIA	0.36	1	0.1408	FALSE	344	826	44	306	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND5--MT-ND6	5	5	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	4984	1	0	0.0542	0.0542	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	CHP212_AUTONOMIC_GANGLIA	0	1	0.1084	FALSE	26	124	4	93	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	6	0	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHP212_AUTONOMIC_GANGLIA	1	1	0.065	FALSE	499	1288	110	792	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	4	6	MT-ND4	1447	chrM:11206:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	288	0	0.03	1	0.0433	0.065	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHP212_AUTONOMIC_GANGLIA	0.03	1	0.1083	FALSE	344	827	44	306	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	5	1	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0542	0.0108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHP212_AUTONOMIC_GANGLIA	0.75	1	0.065	FALSE	499	1288	110	792	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHP212_AUTONOMIC_GANGLIA	1	1	0.0542	FALSE	499	1288	110	792	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	6	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	760	0	0.01	1	0.0325	0.065	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHP212_AUTONOMIC_GANGLIA	0.01	1	0.0975	FALSE	344	827	44	306	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-TA--MT-TC	4	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0.0217	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CHP212_AUTONOMIC_GANGLIA	1	1	0.065	FALSE	462	80	0	856	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	4	1	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0433	0.0108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHP212_AUTONOMIC_GANGLIA	0.62	1	0.0541	FALSE	499	1288	110	792	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHP212_AUTONOMIC_GANGLIA	1	1	0.0433	FALSE	344	821	44	306	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0433	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CHP212_AUTONOMIC_GANGLIA	1	1	0.0433	FALSE	292	1546	117	613	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	CHSY3--HSPA8P4	3	2	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	11	0	0.31	1	0.0325	0.0217	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	CHP212_AUTONOMIC_GANGLIA	0.31	1	0.0542	FALSE	89	26	1	44	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	1	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	23	0	0.15	1	0.0325	0.0108	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CHP212_AUTONOMIC_GANGLIA	0.15	1	0.0433	FALSE	344	826	44	306	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	1	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0325	0.0108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHP212_AUTONOMIC_GANGLIA	0.67	1	0.0433	FALSE	499	1288	110	792	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	1	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0325	0.0108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHP212_AUTONOMIC_GANGLIA	0.67	1	0.0433	FALSE	499	1288	110	792	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	1	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0325	0.0108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHP212_AUTONOMIC_GANGLIA	0.67	1	0.0433	FALSE	499	1288	110	792	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MT-ND3--MT-CO3	3	0	MT-ND3	1064	chrM:10122:+	MT-CO3	5089	chrM:9949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:+:[69],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CHP212_AUTONOMIC_GANGLIA	1	1	0.0325	FALSE	2	2	0	11	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	RPSAP52--HMGA2	2	4	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	319	1	0.02	0.0217	0.0433	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	CHP212_AUTONOMIC_GANGLIA	0.02	1	0.065	FALSE	0	59	0	125	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	AC096559.1--GREB1	2	1	AC096559.1	10319	chr2:12448910:+	GREB1	25173	chr2:11696580:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0217	0.0108	AC096559.1->chr2:11988748-12718474:+,GREB1->chr2:11674242-11782914:+,growth_regulation_by_estrogen_in_breast_cancer_1	CHP212_AUTONOMIC_GANGLIA	0.75	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	AC096559.1--GREB1	2	1	AC096559.1	13591	chr2:12480427:+	GREB1	25173	chr2:11696580:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0217	0.0108	AC096559.1->chr2:11988748-12718474:+,GREB1->chr2:11674242-11782914:+,growth_regulation_by_estrogen_in_breast_cancer_1	CHP212_AUTONOMIC_GANGLIA	0.75	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0217	0.0108	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CHP212_AUTONOMIC_GANGLIA	0.5	1	0.0325	FALSE	515	4851	409	746	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	CALM2--C9orf3	2	0	CALM2	1161	chr2:47403580:-	C9orf3	51730	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CHP212_AUTONOMIC_GANGLIA	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	CTDSP1--DNM3OS	2	0	CTDSP1	5150	chr2:219267128:+	DNM3OS	12044	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx_FI:{Blood_Vessel=[count:34=pct:9.2],Ovary=[count:11=pct:20.8],Colon=[count:9=pct:4.7],Esophagus=[count:5=pct:1.2],Adipose_Tissue=[count:4=pct:1.3],Breast=[count:4=pct:3.6],Thyroid=[count:4=pct:2.3],Spleen=[count:3=pct:2.7],Lung=[count:3=pct:1.8],Vagina=[count:2=pct:3.6],Uterus=[count:2=pct:4.7],Skin=[count:2=pct:0.6],Prostate=[count:2=pct:3.3],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Testis=[count:1=pct:1.0]},CTDSP1->CTD_small_phosphatase_1,chr2:219262979-219270664:+,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	CHP212_AUTONOMIC_GANGLIA	1	1	0.0217	TRUE	71	70	15	9	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	EYA4--FARS2	2	0	EYA4	7372	chr6:133595951:+	FARS2	43282	chr6:5545413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	EYA4->EYA_transcriptional_coactivator_and_phosphatase_4,Oncogene{Bushman},chr6:133561736-133853258:+,FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial	CHP212_AUTONOMIC_GANGLIA	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	HIBADH--SMURF2	2	0	HIBADH	6024	chr7:27668990:-	SMURF2	25322	chr17:62574694:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	HIBADH->3-hydroxyisobutyrate_dehydrogenase,chr7:27565061-27702614:-,SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-	CHP212_AUTONOMIC_GANGLIA	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	HNRNPH1--WHSC1	2	0	HNRNPH1	4526	chr5:179050038:-	WHSC1	22624	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	CHP212_AUTONOMIC_GANGLIA	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	MRPS21--BAZ2A	2	0	MRPS21	1581	chr1:150266869:+	BAZ2A	12650	chr12:57007922:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	MRPS21->chr1:150266289-150281414:+,mitochondrial_ribosomal_protein_S21,BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-	CHP212_AUTONOMIC_GANGLIA	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	PHF7--FAM208A	2	0	PHF7	4385	chr3:52448603:+	FAM208A	14014	chr3:56707753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	PHF7->PHD_finger_protein_7,chr3:52444673-52457657:+,FAM208A->chr3:56654161-56717265:-,family_with_sequence_similarity_208_member_A	CHP212_AUTONOMIC_GANGLIA	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CHP212_AUTONOMIC_GANGLIA	1	1	0.0217	FALSE	16	356	14	466	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	RP11-166D19.1--DNM3OS	2	0	RP11-166D19.1	5868	chr11:121971082:-	DNM3OS	18442	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx_FI:{Ovary=[count:4=pct:7.5],Blood_Vessel=[count:3=pct:0.8],Thyroid=[count:2=pct:1.1],Uterus=[count:1=pct:2.3],Esophagus=[count:1=pct:0.2]},RP11-166D19.1->chr11:121899063-121987031:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	CHP212_AUTONOMIC_GANGLIA	1	1	0.0217	TRUE	11	20	1	11	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CHP212_AUTONOMIC_GANGLIA	1	1	0.0217	TRUE	274	363	69	150	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	3	0	0.57	1	0.0108	0.0325	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CHP212_AUTONOMIC_GANGLIA	0.57	1	0.0433	FALSE	407	2205	196	549	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0108	0.0217	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CHP212_AUTONOMIC_GANGLIA	1	1	0.0325	FALSE	416	2512	207	587	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0108	0.0217	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CHP212_AUTONOMIC_GANGLIA	0.75	1	0.0325	TRUE	62	24	1	171	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	C14orf37--PSMA3	1	1	C14orf37	1185	chr14:58764673:-	PSMA3	25575	chr14:58724463:+	ONLY_REF_SPLICE	YES	0	775	1	0	0.0108	0.0108	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	CHP212_AUTONOMIC_GANGLIA	0	1	0.0216	FALSE	0	1	0	1	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	COL4A1--COL1A1	1	1	COL4A1	25897	chr13:110830189:-	COL1A1	58160	chr17:48267957:-	ONLY_REF_SPLICE	YES	560	5640	0	0	0.0108	0.0108	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	CHP212_AUTONOMIC_GANGLIA	0	0	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	CPSF6--C9orf3	1	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	NO	292	364	0.01	0.01	0.0108	0.0108	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CHP212_AUTONOMIC_GANGLIA	0.01	0.01	0.0216	FALSE	53	99	2	44	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	24	0	0.08	1	0.0108	0.0108	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CHP212_AUTONOMIC_GANGLIA	0.08	1	0.0216	FALSE	164	806	69	479	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	PCGF3--GAK	1	1	PCGF3	1223	chr4:699759:+	GAK	27552	chr4:898567:-	ONLY_REF_SPLICE	NO	28	145	0.07	0.01	0.0108	0.0108	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1},LOCAL_INVERSION:+:-:[78636],PCGF3->chr4:699537-764428:+,polycomb_group_ring_finger_3,GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase	CHP212_AUTONOMIC_GANGLIA	0.01	0.07	0.0216	FALSE	0	1	0	2	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	RCC1--CYB5D2	1	1	RCC1	2920	chr1:28835417:+	CYB5D2	20716	chr17:4053185:+	ONLY_REF_SPLICE	NO	10	68	0.17	0.03	0.0108	0.0108	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CYB5D2->chr17:4046462-4090605:+,cytochrome_b5_domain_containing_2	CHP212_AUTONOMIC_GANGLIA	0.03	0.17	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	1	1	0.67	0.0108	0.0108	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CHP212_AUTONOMIC_GANGLIA	0.67	1	0.0216	TRUE	160	277	29	98	0	FALSE	ACH-000120
CHP212_AUTONOMIC_GANGLIA	USP4--RHOA	1	1	USP4	2917	chr3:49372902:-	RHOA	35012	chr3:49413024:-	ONLY_REF_SPLICE	YES	72	2612	0.03	0	0.0108	0.0108	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[18433],USP4->Oncogene{Bushman},chr3:49315264-49378145:-,ubiquitin_specific_peptidase_4,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	CHP212_AUTONOMIC_GANGLIA	0	0.03	0.0216	FALSE	0	2	0	2	2	FALSE	ACH-000120
SF539_CENTRAL_NERVOUS_SYSTEM	HLA-A--MT-ND1	126	2	HLA-A	2742	chr6:29910778:+	MT-ND1	8756	chrM:3437:+	INCL_NON_REF_SPLICE	YES	4952	2146	0.03	0.06	1.1115	0.0176	HLA-A->chr6:29909037-29913661:+,major_histocompatibility_complex,_class_I,_A,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SF539_CENTRAL_NERVOUS_SYSTEM	0.03	0.06	1.1291	FALSE	1	0	0	11	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	63	10	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5557	0.0882	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.6439	TRUE	508	994	45	981	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	32	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2823	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.2823	TRUE	519	3926	326	965	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	29	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2558	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.2558	TRUE	402	216	10	229	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	23	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2029	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.2029	FALSE	13	9	0	364	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	10	14	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0882	0.1235	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.2117	FALSE	499	1288	110	792	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--IFI27	12	5	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	2892	2	0.01	0.89	0.1059	0.0441	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	SF539_CENTRAL_NERVOUS_SYSTEM	0.01	0.89	0.15	TRUE	0	2	0	13	2	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	11	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	40	83	0.29	0.16	0.097	0.0441	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SF539_CENTRAL_NERVOUS_SYSTEM	0.16	0.29	0.1411	TRUE	267	562	48	632	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	11	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.097	0.0176	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.1146	FALSE	499	1288	110	792	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	IFI27--MT-ND4L	9	6	IFI27	8929	chr14:94582869:+	MT-ND4L	12095	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1658	0	0.01	1	0.0794	0.0529	IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SF539_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.1323	FALSE	0	0	0	13	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	10	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0882	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0882	TRUE	347	1186	183	220	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0882	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0882	TRUE	0	0	0	434	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0794	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0794	FALSE	13	9	0	364	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	9	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0794	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0794	TRUE	254	575	65	124	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	8	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0706	0.0176	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0882	FALSE	499	1288	110	792	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	8	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0706	0.0176	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF539_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.0882	FALSE	515	4851	409	746	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	MAF--RP11-679B19.2	7	5	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0617	0.0441	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.1058	TRUE	48	25	3	38	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	7	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0617	0.0176	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0793	FALSE	416	2512	207	587	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	5	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	43	82	0.2	0.12	0.0441	0.0529	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SF539_CENTRAL_NERVOUS_SYSTEM	0.12	0.2	0.097	TRUE	267	562	48	632	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0.0794	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.1147	FALSE	499	1288	110	792	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	5	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0441	0.0441	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF539_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.0882	FALSE	407	2205	196	549	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	LAMP1--MT-CO2	5	3	LAMP1	10050	chr13:113976678:+	MT-CO2	14590	chrM:7816:+	INCL_NON_REF_SPLICE	YES	1634	14960	0	0	0.0441	0.0265	LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF539_CENTRAL_NERVOUS_SYSTEM	0	0	0.0706	FALSE	0	0	0	6	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	ANXA5--TRPC3	5	1	ANXA5	7828	chr4:122599049:-	TRPC3	30988	chr4:122803584:-	ONLY_REF_SPLICE	YES	1074	2	0.01	0.75	0.0441	0.0088	ANXA5->annexin_A5,chr4:122589110-122618268:-,TRPC3->chr4:122800182-122872909:-,transient_receptor_potential_cation_channel_subfamily_C_member_3	SF539_CENTRAL_NERVOUS_SYSTEM	0.01	0.75	0.0529	FALSE	0	0	0	1	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	AL139819.1--MT-ATP6	5	0	AL139819.1	2074	chr10:102122470:+	MT-ATP6	6381	chrM:8927:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	AL139819.1->chr10:102121397-102123376:+,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0441	FALSE	0	0	0	3	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	LAMP1--MT-CO2	4	3	LAMP1	10059	chr13:113976687:+	MT-CO2	14590	chrM:7816:+	INCL_NON_REF_SPLICE	YES	1736	14960	0	0	0.0353	0.0265	LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SF539_CENTRAL_NERVOUS_SYSTEM	0	0	0.0618	FALSE	0	0	0	6	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	ERC1--CCDC77	4	2	ERC1	6700	chr12:1137738:+	CCDC77	48868	chr12:514677:+	ONLY_REF_SPLICE	YES	11	10	0.35	0.38	0.0353	0.0176	ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77	SF539_CENTRAL_NERVOUS_SYSTEM	0.35	0.38	0.0529	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	SLC25A36--CHMP1A	4	1	SLC25A36	5624	chr3:140682069:+	CHMP1A	24854	chr16:89713739:-	ONLY_REF_SPLICE	YES	58	195	0.08	0.03	0.0353	0.0088	GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Adrenal_Gland=1,Brain_-_Amygdala=1},SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SF539_CENTRAL_NERVOUS_SYSTEM	0.03	0.08	0.0441	TRUE	0	5	0	1	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0353	FALSE	499	1288	110	792	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	4	MT-ND6	1029	chrM:14645:-	MT-TE	4495	chrM:14773:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0265	0.0353	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0618	FALSE	499	1288	110	792	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	CDK13--C7orf10	3	2	CDK13	2816	chr7:39991451:+	C7orf10	31578	chr7:40234539:+	ONLY_REF_SPLICE	YES	40	1	0.11	0.83	0.0265	0.0176	NEIGHBORS[37842],CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,C7orf10->chr7:40174575-40900362:+	SF539_CENTRAL_NERVOUS_SYSTEM	0.11	0.83	0.0441	FALSE	0	0	0	1	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	3	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.0265	0.0176	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SF539_CENTRAL_NERVOUS_SYSTEM	0.62	1	0.0441	FALSE	164	806	69	479	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0176	0.0441	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF539_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.0617	FALSE	192	492	57	212	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	AC009133.14--MT-RNR2	3	0	AC009133.14	2178	chr16:29822129:-	MT-RNR2	7353	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0265	0	AC009133.14->chr16:29819966-29823306:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0265	FALSE	0	4	0	2	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	FBXO46--RAB8A	3	0	FBXO46	2080	chr19:46226731:-	RAB8A	13726	chr19:16232560:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	FBXO46->F-box_protein_46,chr19:46213887-46234162:-,RAB8A->Oncogene{Bushman},RAB8A,_member_RAS_oncogene_family,chr19:16222439-16245044:+	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	3	0	HSP90AB1	7270	chr6:44221093:+	MT-RNR2	10834	chrM:1707:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0265	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0265	FALSE	13	9	0	364	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0265	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0265	TRUE	0	0	0	434	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	3	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0265	FALSE	56	216	12	147	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	ERC1--CCDC77	2	2	ERC1	6700	chr12:1137738:+	CCDC77	49922	chr12:518534:+	ONLY_REF_SPLICE	YES	11	16	0.27	0.2	0.0176	0.0176	ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77	SF539_CENTRAL_NERVOUS_SYSTEM	0.2	0.27	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	ERC1--CCDC77	2	2	ERC1	6700	chr12:1137738:+	CCDC77	51336	chr12:520913:+	ONLY_REF_SPLICE	YES	11	25	0.27	0.14	0.0176	0.0176	ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77	SF539_CENTRAL_NERVOUS_SYSTEM	0.14	0.27	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	PACSIN2--MYH9	2	2	PACSIN2	1125	chr22:43411027:-	MYH9	43693	chr22:36708267:-	ONLY_REF_SPLICE	YES	51	613	0.07	0.01	0.0176	0.0176	PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	SF539_CENTRAL_NERVOUS_SYSTEM	0.01	0.07	0.0352	FALSE	0	0	0	1	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0176	0.0176	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF539_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.0352	FALSE	467	2173	244	435	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	27	0.6	0.1	0.0176	0.0088	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SF539_CENTRAL_NERVOUS_SYSTEM	0.1	0.6	0.0264	FALSE	16	356	14	466	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0176	0.0088	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SF539_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0264	TRUE	274	363	69	150	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	APIP--LDLRAD3	2	0	APIP	1272	chr11:34937775:-	LDLRAD3	27528	chr11:36248635:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	APIP->APAF1_interacting_protein,chr11:34874641-34938046:-,LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	CCDC77--ERC1	2	0	CCDC77	14934	chr12:547720:+	ERC1	25896	chr12:1136914:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	HAGH--MRPL14	2	0	HAGH	6114	chr16:1869116:-	MRPL14	18681	chr6:44084366:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	HAGH->chr16:1845621-1877195:-,hydroxyacylglutathione_hydrolase,MRPL14->chr6:44081194-44095194:-,mitochondrial_ribosomal_protein_L14	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	IFI44L--NPHP3	2	0	IFI44L	1650	chr1:79086256:+	NPHP3	40710	chr3:132410130:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	IFI44L->chr1:79085607-79111830:+,interferon_induced_protein_44_like,NPHP3->chr3:132276986-132441303:-,nephronophthisis_3_(adolescent)	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	JARID2--RP11-277P12.20	2	0	JARID2	3478	chr6:15374483:+	RP11-277P12.20	29374	chr12:10526634:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,RP11-277P12.20->chr12:10516368-10551105:+	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	MEF2A--LRRC28	2	0	MEF2A	6729	chr15:100173378:+	LRRC28	48619	chr15:99926235:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=3;pct=0.03%;dist=Ovary=1,Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1},LOCAL_REARRANGEMENT:+:[86436],MEF2A->chr15:100017370-100256671:+,myocyte_enhancer_factor_2A,LRRC28->chr15:99791567-99930934:+,leucine_rich_repeat_containing_28	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	TRUE	0	2	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	NDUFV2--RALBP1	2	0	NDUFV2	1168	chr18:9102795:+	RALBP1	18205	chr18:9512989:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+,RALBP1->chr18:9475007-9538114:+,ralA_binding_protein_1	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	PLXNA1--RERE	2	0	PLXNA1	22272	chr3:126748907:+	RERE	65150	chr1:8416306:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	PLXNA1->chr3:126707437-126756235:+,plexin_A1,RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	RB1--ITM2B	2	0	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	TRUE	53	73	8	19	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	RP11-81N13.1--FAM19A1	2	0	RP11-81N13.1	4626	chr3:67721428:+	FAM19A1	22512	chr3:68466430:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	NEIGHBORS[55222],RP11-81N13.1->chr3:67705121-67998137:+,FAM19A1->chr3:68053359-68594776:+,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A1	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	FALSE	0	0	0	1	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	HIF1A--PRKCH	1	3	HIF1A	1327	chr14:62162557:+	PRKCH	36008	chr14:61857943:+	ONLY_REF_SPLICE	YES	302	5	0.01	0.44	0.0088	0.0265	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	SF539_CENTRAL_NERVOUS_SYSTEM	0.01	0.44	0.0353	FALSE	0	4	0	1	1	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	CDK13--C7orf10	1	2	CDK13	2816	chr7:39991451:+	C7orf10	34431	chr7:40277234:+	ONLY_REF_SPLICE	YES	40	1	0.07	0.75	0.0088	0.0176	NEIGHBORS[37842],CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,C7orf10->chr7:40174575-40900362:+	SF539_CENTRAL_NERVOUS_SYSTEM	0.07	0.75	0.0264	FALSE	0	1	0	1	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	ADAM10--FAM227B	1	1	ADAM10	10379	chr15:58957296:-	FAM227B	43752	chr15:49834003:-	ONLY_REF_SPLICE	YES	125	0	0.02	1	0.0088	0.0088	ADAM10->ADAM_metallopeptidase_domain_10,chr15:58887403-59042177:-,FAM227B->chr15:49619159-49913128:-,family_with_sequence_similarity_227_member_B	SF539_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0176	TRUE	0	0	0	1	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	CCDC77--ERC1	1	1	CCDC77	14934	chr12:547720:+	ERC1	24469	chr12:1129841:+	ONLY_REF_SPLICE	YES	29	6	0.06	0.25	0.0088	0.0088	CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	SF539_CENTRAL_NERVOUS_SYSTEM	0.06	0.25	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	GNB2L1--AGFG1	1	1	GNB2L1	7696	chr5:180666487:-	AGFG1	28525	chr2:228416675:+	ONLY_REF_SPLICE	YES	2369	89	0	0.02	0.0088	0.0088	GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-,AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+	SF539_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0176	FALSE	0	0	0	1	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	HPS1--CHMP1A	1	1	HPS1	3352	chr10:100202881:-	CHMP1A	27755	chr16:89713739:-	ONLY_REF_SPLICE	NO	98	195	0.02	0.01	0.0088	0.0088	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Adrenal_Gland=[count:1=pct:1.2],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Whole_Blood=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Lung=1,Brain=1},HPS1->HPS1,_biogenesis_of_lysosomal_organelles_complex_3_subunit_1,chr10:100175955-100206684:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SF539_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0176	FALSE	2	5	0	1	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0088	0.0088	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SF539_CENTRAL_NERVOUS_SYSTEM	1	1	0.0176	FALSE	93	270	15	244	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	SCAPER--ETFA	1	1	SCAPER	5656	chr15:77150150:-	ETFA	64007	chr15:76523739:-	ONLY_REF_SPLICE	YES	7	266	0.22	0.01	0.0088	0.0088	NEIGHBORS[36713],SCAPER->S-phase_cyclin_A-associated_protein_in_the_ER,chr15:76640526-77197785:-,ETFA->chr15:76507696-76603813:-,electron_transfer_flavoprotein_alpha_subunit	SF539_CENTRAL_NERVOUS_SYSTEM	0.01	0.22	0.0176	FALSE	0	0	0	1	0	FALSE	ACH-000273
SF539_CENTRAL_NERVOUS_SYSTEM	SMC4--C9orf3	1	1	SMC4	6108	chr3:160122292:+	C9orf3	65123	chr9:97848964:+	ONLY_REF_SPLICE	YES	396	138	0.01	0.01	0.0088	0.0088	SMC4->chr3:160117062-160152750:+,structural_maintenance_of_chromosomes_4,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SF539_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0176	FALSE	0	1	0	1	1	FALSE	ACH-000273
NCIH810_LUNG	WI2-1896O14.1--RP11-353N4.1	224	27	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	1	1	1	2.4388	0.294	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	NCIH810_LUNG	1	1	2.7328	TRUE	361	258	24	38	0	FALSE	ACH-000789
NCIH810_LUNG	KCNH6--ACE	188	117	KCNH6	1156	chr17:61600850:+	ACE	32405	chr17:61570797:+	ONLY_REF_SPLICE	YES	124	68	0.71	0.82	2.0469	1.2739	{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:+,chr17:[1490],KCNH6->chr17:61600695-61626338:+,potassium_voltage-gated_channel_subfamily_H_member_6,ACE->angiotensin_I_converting_enzyme,chr17:61554422-61599205:+,chr17:61562184-61599209:+	NCIH810_LUNG	0.71	0.82	3.3208	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	CCDC57--CCNE1	142	56	CCDC57	29723	chr17:80085568:-	CCNE1	42403	chr19:30303439:+	ONLY_REF_SPLICE	YES	36	0	0.85	1	1.546	0.6097	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CCNE1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:30302805-30315215:+,cyclin_E1	NCIH810_LUNG	0.85	1	2.1557	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	KCNH6--ACE	107	47	KCNH6	1156	chr17:61600850:+	ACE	32891	chr17:61571283:+	ONLY_REF_SPLICE	YES	124	114	0.55	0.57	1.165	0.5117	{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:+,chr17:[1490],KCNH6->chr17:61600695-61626338:+,potassium_voltage-gated_channel_subfamily_H_member_6,ACE->angiotensin_I_converting_enzyme,chr17:61554422-61599205:+,chr17:61562184-61599209:+	NCIH810_LUNG	0.55	0.57	1.6767	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	MT-TA--MT-TN	92	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0017	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH810_LUNG	1	1	1.0017	FALSE	369	2501	205	193	0	FALSE	ACH-000789
NCIH810_LUNG	JAGN1--TTLL3	71	34	JAGN1	1258	chr3:9932495:+	TTLL3	10382	chr3:9854627:+	ONLY_REF_SPLICE	YES	138	5	0.43	0.95	0.773	0.3702	LOCAL_REARRANGEMENT:+:[35416],JAGN1->chr3:9932238-9936033:+,jagunal_homolog_1,TTLL3->Oncogene{Bushman},chr3:9849770-9896822:+,tubulin_tyrosine_ligase_like_3	NCIH810_LUNG	0.43	0.95	1.1432	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	SUZ12P--CRLF3	71	8	SUZ12P	11951	chr17:29096983:+	CRLF3	36039	chr17:29100515:-	ONLY_REF_SPLICE	YES	10	0	0.89	1	0.773	0.0871	NEIGHBORS_OVERLAP:+:-:[21520],SUZ12P->chr17:29036317-29117926:+,CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3	NCIH810_LUNG	0.89	1	0.8601	FALSE	11	30	1	7	0	FALSE	ACH-000789
NCIH810_LUNG	TIMM23B--LINC00843	67	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7295	0.1415	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH810_LUNG	1	1	0.871	TRUE	508	994	45	981	0	FALSE	ACH-000789
NCIH810_LUNG	CNOT1--RP11-481J2.2	61	17	CNOT1	16673	chr16:58608513:-	RP11-481J2.2	53823	chr16:58469596:+	ONLY_REF_SPLICE	YES	60	0	0.57	1	0.6641	0.1851	LOCAL_INVERSION:-:+:[57481],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,RP11-481J2.2->chr16:58455230-58496374:+	NCIH810_LUNG	0.57	1	0.8492	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	GOLPH3L--PTPLAD1	51	28	GOLPH3L	2358	chr1:150667132:-	PTPLAD1	16759	chr15:65844014:+	ONLY_REF_SPLICE	YES	82	334	0.49	0.19	0.5553	0.3049	{Klijn_CCL:Lung=1},GOLPH3L->chr1:150618701-150669630:-,golgi_phosphoprotein_3_like,PTPLAD1->chr15:65822756-65870687:+	NCIH810_LUNG	0.19	0.49	0.8602	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	CTC-525D6.1--CYP2G2P	48	21	CTC-525D6.1	1329	chr19:30016331:-	CYP2G2P	20170	chr19:41561248:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5226	0.2286	CTC-525D6.1->chr19:29777918-30016659:-,CYP2G2P->chr19:41556354-41568349:-,cytochrome_P450_family_2_subfamily_G_member_2,_pseudogene	NCIH810_LUNG	1	1	0.7512	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	3	197	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	11	0	0.95	1	0.0327	2.1449	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.95	1	2.1776	FALSE	344	826	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	4	188	MT-ND4	1100	chrM:10859:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	YES	4	1	0.98	0.99	0.0436	2.0469	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.98	0.99	2.0905	FALSE	344	826	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	KCNH6--ACE	13	123	KCNH6	1156	chr17:61600850:+	ACE	22985	chr17:61559827:+	ONLY_REF_SPLICE	YES	124	71	0.52	0.66	0.1415	1.3392	{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:+,chr17:[1490],KCNH6->chr17:61600695-61626338:+,potassium_voltage-gated_channel_subfamily_H_member_6,ACE->angiotensin_I_converting_enzyme,chr17:61554422-61599205:+,chr17:61562184-61599209:+	NCIH810_LUNG	0.52	0.66	1.4807	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	PKHD1--RP3-335N17.2	40	13	PKHD1	71893	chr6:51512829:-	RP3-335N17.2	86837	chr6:51487158:+	ONLY_REF_SPLICE	YES	10	1	0.84	0.98	0.4355	0.1415	NEIGHBORS_OVERLAP:-:+:[7584],PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive),RP3-335N17.2->chr6:51464521-51487682:+	NCIH810_LUNG	0.84	0.98	0.577	FALSE	0	0	0	1	0	FALSE	ACH-000789
NCIH810_LUNG	TIMM23--RP11-464F9.1	42	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	119	0	0.27	1	0.4573	0.0327	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH810_LUNG	0.27	1	0.49	TRUE	519	3926	326	965	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	6	140	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	0	0.99	1	0.0653	1.5243	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.99	1	1.5896	FALSE	344	821	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	7	135	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	5	1	0.97	0.99	0.0762	1.4698	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.97	0.99	1.546	FALSE	344	826	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	DHRS7B--PKHD1	36	3	DHRS7B	2421	chr17:21030304:+	PKHD1	87546	chr6:51514018:-	ONLY_REF_SPLICE	YES	2	9	0.95	0.81	0.392	0.0327	{Klijn_CCL:Lung=1},DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)	NCIH810_LUNG	0.81	0.95	0.4247	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	LINC01014--KCNMB2	34	9	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	23	1	0.65	0.98	0.3702	0.098	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH810_LUNG	0.65	0.98	0.4682	FALSE	12	33	18	33	0	FALSE	ACH-000789
NCIH810_LUNG	RP11-123O10.4--GRIP1	30	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3266	0.0544	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH810_LUNG	1	1	0.381	FALSE	416	2512	207	587	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND6--MT-TE	30	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3266	0.0327	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH810_LUNG	1	1	0.3593	FALSE	499	1288	110	792	0	FALSE	ACH-000789
NCIH810_LUNG	PKHD1--RP3-335N17.2	27	15	PKHD1	71893	chr6:51512829:-	RP3-335N17.2	85231	chr6:51470062:+	ONLY_REF_SPLICE	YES	10	0	0.81	1	0.294	0.1633	NEIGHBORS_OVERLAP:-:+:[7584],PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive),RP3-335N17.2->chr6:51464521-51487682:+	NCIH810_LUNG	0.81	1	0.4573	FALSE	0	0	0	1	0	FALSE	ACH-000789
NCIH810_LUNG	MT-TA--MT-TC	28	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3049	0.0653	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH810_LUNG	1	1	0.3702	FALSE	462	80	0	856	0	FALSE	ACH-000789
NCIH810_LUNG	MT-TA--MT-TC	28	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3049	0.0544	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH810_LUNG	1	1	0.3593	FALSE	462	80	0	856	0	FALSE	ACH-000789
NCIH810_LUNG	SUZ12P--CRLF3	25	15	SUZ12P	11951	chr17:29096983:+	CRLF3	35192	chr17:29101362:-	ONLY_REF_SPLICE	YES	10	0	0.8	1	0.2722	0.1633	NEIGHBORS_OVERLAP:+:-:[21520],SUZ12P->chr17:29036317-29117926:+,CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3	NCIH810_LUNG	0.8	1	0.4355	FALSE	11	30	1	7	0	FALSE	ACH-000789
NCIH810_LUNG	CGGBP1--TBC1D5	25	11	CGGBP1	2284	chr3:88190120:-	TBC1D5	48839	chr3:17349626:-	ONLY_REF_SPLICE	YES	5	12	0.88	0.75	0.2722	0.1198	CGGBP1->CGG_triplet_repeat_binding_protein_1,chr3:88101094-88199035:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	NCIH810_LUNG	0.75	0.88	0.392	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	PDPK1--RBFOX1	24	15	PDPK1	9922	chr16:2616454:+	RBFOX1	43518	chr16:7568149:+	ONLY_REF_SPLICE	YES	20	4	0.66	0.91	0.2613	0.1633	PDPK1->3-phosphoinositide_dependent_protein_kinase_1,chr16:2587965-2653189:+,RBFOX1->RNA_binding_protein,_fox-1_homolog_1,chr16:6069095-7763340:+	NCIH810_LUNG	0.66	0.91	0.4246	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	CCDC57--CCNE1	17	38	CCDC57	29723	chr17:80085568:-	CCNE1	42560	chr19:30303596:+	ONLY_REF_SPLICE	YES	36	23	0.6	0.71	0.1851	0.4137	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CCNE1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:30302805-30315215:+,cyclin_E1	NCIH810_LUNG	0.6	0.71	0.5988	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	CRLF3--SUZ12P	25	2	CRLF3	16484	chr17:29100425:-	SUZ12P	34879	chr17:29111801:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.75	0.2722	0.0218	NEIGHBORS_OVERLAP:-:+:[21520],CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3,SUZ12P->chr17:29036317-29117926:+	NCIH810_LUNG	0.75	1	0.294	FALSE	3	1	0	3	0	FALSE	ACH-000789
NCIH810_LUNG	MT-TA--MT-TN	8	67	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0871	0.7295	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH810_LUNG	1	1	0.8166	FALSE	369	2501	205	193	0	FALSE	ACH-000789
NCIH810_LUNG	LINC01014--KCNMB2	23	4	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	23	1	0.54	0.96	0.2504	0.0436	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH810_LUNG	0.54	0.96	0.294	FALSE	11	60	26	37	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	12	45	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	9326	0	0.01	1	0.1307	0.4899	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.01	1	0.6206	FALSE	328	800	43	304	0	FALSE	ACH-000789
NCIH810_LUNG	YARS--CSMD2	23	1	YARS	1966	chr1:33282789:-	CSMD2	25777	chr1:34383902:-	ONLY_REF_SPLICE	YES	129	0	0.16	1	0.2504	0.0109	YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase,CSMD2->CUB_and_Sushi_multiple_domains_2,chr1:33979609-34631443:-	NCIH810_LUNG	0.16	1	0.2613	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	SLC25A51--RP11-237M21.1	22	0	SLC25A51	1286	chr9:37904065:-	RP11-237M21.1	14022	chr9:65707604:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2395	0	SLC25A51->chr9:37879400-37904350:-,solute_carrier_family_25_member_51,RP11-237M21.1->chr9:65696702-65725786:-	NCIH810_LUNG	1	1	0.2395	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	ADARB2--C20orf26	21	3	ADARB2	1426	chr10:1779245:-	C20orf26	65881	chr20:20340854:+	ONLY_REF_SPLICE	YES	2	3	0.92	0.89	0.2286	0.0327	ADARB2->Oncogene{Bushman},adenosine_deaminase,_RNA_specific_B2_(inactive),chr10:1228073-1779670:-,C20orf26->chr20:20033158-20341346:+	NCIH810_LUNG	0.89	0.92	0.2613	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	MT-TA--MT-TN	16	22	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1742	0.2395	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH810_LUNG	1	1	0.4137	FALSE	369	2501	205	193	0	FALSE	ACH-000789
NCIH810_LUNG	DHRS7B--PKHD1	20	5	DHRS7B	2421	chr17:21030304:+	PKHD1	85528	chr6:51524767:-	ONLY_REF_SPLICE	YES	2	0	0.93	1	0.2178	0.0544	{Klijn_CCL:Lung=1},DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)	NCIH810_LUNG	0.93	1	0.2722	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	RP11-680G10.1--GSE1	20	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	90	1	0.21	0.2178	0.0436	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH810_LUNG	0.21	1	0.2614	TRUE	465	1949	224	605	0	FALSE	ACH-000789
NCIH810_LUNG	MT-TA--MT-TN	16	18	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1742	0.196	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH810_LUNG	1	1	0.3702	FALSE	369	2501	205	193	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND6--MT-TE	16	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1742	0.1415	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH810_LUNG	0.97	1	0.3157	FALSE	499	1288	110	792	0	FALSE	ACH-000789
NCIH810_LUNG	MT-TA--MT-TN	19	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2069	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH810_LUNG	1	1	0.2069	FALSE	369	2501	205	193	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	7	45	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	454	0	0.1	1	0.0762	0.4899	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.1	1	0.5661	FALSE	344	827	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	11	29	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	282	0	0.12	1	0.1198	0.3157	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.12	1	0.4355	FALSE	344	827	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND6--MT-TE	17	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1851	0.0327	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH810_LUNG	1	1	0.2178	FALSE	499	1288	110	792	0	FALSE	ACH-000789
NCIH810_LUNG	MT-TA--MT-TN	8	39	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0871	0.4246	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH810_LUNG	1	1	0.5117	FALSE	369	2501	205	193	0	FALSE	ACH-000789
NCIH810_LUNG	MT-TA--MT-TN	5	50	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0.5444	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH810_LUNG	1	1	0.5988	FALSE	369	2501	205	193	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	17	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1851	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	1	1	0.1851	FALSE	344	821	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	HSP90AB1--MT-RNR2	16	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1508	0	0.01	1	0.1742	0.0218	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH810_LUNG	0.01	1	0.196	FALSE	13	9	0	364	0	FALSE	ACH-000789
NCIH810_LUNG	RP11-680G10.1--GSE1	15	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	14	1	0.59	0.1633	0.0544	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH810_LUNG	0.59	1	0.2177	TRUE	458	1351	185	561	0	FALSE	ACH-000789
NCIH810_LUNG	PDPK1--RBFOX1	12	16	PDPK1	9922	chr16:2616454:+	RBFOX1	38591	chr16:7378649:+	ONLY_REF_SPLICE	YES	20	0	0.58	1	0.1307	0.1742	PDPK1->3-phosphoinositide_dependent_protein_kinase_1,chr16:2587965-2653189:+,RBFOX1->RNA_binding_protein,_fox-1_homolog_1,chr16:6069095-7763340:+	NCIH810_LUNG	0.58	1	0.3049	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	4	43	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	5	0	0.9	1	0.0436	0.4682	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.9	1	0.5118	FALSE	344	826	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	3	44	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	11	0	0.81	1	0.0327	0.4791	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.81	1	0.5118	FALSE	344	826	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	C15orf57--CBX3	12	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	28	19	0.4	0.5	0.1307	0.0762	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH810_LUNG	0.4	0.5	0.2069	TRUE	267	562	48	632	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	7	27	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	1	0.92	0.97	0.0762	0.294	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.92	0.97	0.3702	FALSE	344	821	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	3	43	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	11	0	0.81	1	0.0327	0.4682	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.81	1	0.5009	FALSE	344	826	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	8	22	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	11	0	0.73	1	0.0871	0.2395	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.73	1	0.3266	FALSE	344	826	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	6	30	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	12	0	0.75	1	0.0653	0.3266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.75	1	0.3919	FALSE	344	826	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	6	28	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	17	0	0.67	1	0.0653	0.3049	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.67	1	0.3702	FALSE	344	826	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	MT-TA--MT-TN	3	39	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.4246	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH810_LUNG	1	1	0.4573	FALSE	369	2501	205	193	0	FALSE	ACH-000789
NCIH810_LUNG	GOLPH3L--PTPLAD1	5	29	GOLPH3L	2906	chr1:150666584:-	PTPLAD1	16759	chr15:65844014:+	ONLY_REF_SPLICE	YES	77	334	0.31	0.09	0.0544	0.3157	{Klijn_CCL:Lung=1},GOLPH3L->chr1:150618701-150669630:-,golgi_phosphoprotein_3_like,PTPLAD1->chr15:65822756-65870687:+	NCIH810_LUNG	0.09	0.31	0.3701	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	9	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	27	0	0.45	1	0.098	0.1415	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.45	1	0.2395	FALSE	344	827	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND6--MT-TE	9	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.098	0.1415	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH810_LUNG	1	1	0.2395	FALSE	499	1288	110	792	0	FALSE	ACH-000789
NCIH810_LUNG	AP000525.9--LA16c-60G3.6	12	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1307	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH810_LUNG	1	1	0.1307	TRUE	0	42	0	133	42	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	12	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1307	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	1	1	0.1307	FALSE	230	193	14	283	0	FALSE	ACH-000789
NCIH810_LUNG	JAGN1--TTLL3	4	31	JAGN1	1258	chr3:9932495:+	TTLL3	10385	chr3:9854630:+	ONLY_REF_SPLICE	YES	138	5	0.2	0.88	0.0436	0.3375	LOCAL_REARRANGEMENT:+:[35416],JAGN1->chr3:9932238-9936033:+,jagunal_homolog_1,TTLL3->Oncogene{Bushman},chr3:9849770-9896822:+,tubulin_tyrosine_ligase_like_3	NCIH810_LUNG	0.2	0.88	0.3811	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	MT-TA--MT-TN	3	35	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.3811	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH810_LUNG	1	1	0.4138	FALSE	369	2501	205	193	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	10	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11907	0	0	1	0.1089	0.0544	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	0	1	0.1633	FALSE	231	217	16	283	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	4	29	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10189	0	0	1	0.0436	0.3157	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0	1	0.3593	FALSE	343	822	44	305	0	FALSE	ACH-000789
NCIH810_LUNG	DDC--MT-ND4L	9	8	DDC	4672	chr7:50611650:-	MT-ND4L	25081	chrM:10471:+	INCL_NON_REF_SPLICE	YES	3010	0	0.01	1	0.098	0.0871	DDC->chr7:50526134-50633154:-,dopa_decarboxylase,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.01	1	0.1851	FALSE	0	0	0	1	0	FALSE	ACH-000789
NCIH810_LUNG	NUDT1--HACE1	11	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1198	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	NCIH810_LUNG	1	1	0.1198	TRUE	1	20	0	20	17	FALSE	ACH-000789
NCIH810_LUNG	SLC25A51--RP11-237M21.1	10	1	SLC25A51	1823	chr9:37903528:-	RP11-237M21.1	14022	chr9:65707604:-	INCL_NON_REF_SPLICE	YES	9	0	0.55	1	0.1089	0.0109	SLC25A51->chr9:37879400-37904350:-,solute_carrier_family_25_member_51,RP11-237M21.1->chr9:65696702-65725786:-	NCIH810_LUNG	0.55	1	0.1198	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	HSPBP1--GRK5	10	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1089	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH810_LUNG	1	1	0.1089	TRUE	1	39	0	134	39	FALSE	ACH-000789
NCIH810_LUNG	MT-TA--MT-TN	10	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1089	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH810_LUNG	1	1	0.1089	FALSE	369	2501	205	193	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	8	6	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10647	43	0	0.25	0.0871	0.0653	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	0	0.25	0.1524	FALSE	231	217	16	283	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	8	5	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11071	4	0	0.76	0.0871	0.0544	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	0	0.76	0.1415	FALSE	231	217	16	283	0	FALSE	ACH-000789
NCIH810_LUNG	PKHD1--RP3-335N17.2	6	13	PKHD1	71893	chr6:51512829:-	RP3-335N17.2	86832	chr6:51487153:+	ONLY_REF_SPLICE	YES	10	1	0.66	0.95	0.0653	0.1415	NEIGHBORS_OVERLAP:-:+:[7584],PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive),RP3-335N17.2->chr6:51464521-51487682:+	NCIH810_LUNG	0.66	0.95	0.2068	FALSE	0	0	0	1	0	FALSE	ACH-000789
NCIH810_LUNG	SLC25A51--RP11-237M21.1	9	1	SLC25A51	1823	chr9:37903528:-	RP11-237M21.1	14011	chr9:65707615:-	INCL_NON_REF_SPLICE	YES	9	0	0.53	1	0.098	0.0109	SLC25A51->chr9:37879400-37904350:-,solute_carrier_family_25_member_51,RP11-237M21.1->chr9:65696702-65725786:-	NCIH810_LUNG	0.53	1	0.1089	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	9	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.098	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	1	1	0.098	FALSE	230	198	14	283	0	FALSE	ACH-000789
NCIH810_LUNG	NPM1P4--NCL	8	0	NPM1P4	1488	chr13:28270854:-	NCL	10591	chr2:232325485:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0871	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	NCIH810_LUNG	1	1	0.0871	TRUE	0	0	0	3	0	TRUE	ACH-000789
NCIH810_LUNG	PDPK1--RBFOX1	7	3	PDPK1	7316	chr16:2611523:+	RBFOX1	43518	chr16:7568149:+	ONLY_REF_SPLICE	YES	29	4	0.26	0.71	0.0762	0.0327	PDPK1->3-phosphoinositide_dependent_protein_kinase_1,chr16:2587965-2653189:+,RBFOX1->RNA_binding_protein,_fox-1_homolog_1,chr16:6069095-7763340:+	NCIH810_LUNG	0.26	0.71	0.1089	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	CTD-2008L17.1--RP11-456O19.2	7	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0762	0.0218	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH810_LUNG	0.82	1	0.098	FALSE	20	187	4	79	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ATP6--MT-CO2	7	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	63	4	0.11	0.67	0.0762	0.0109	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH810_LUNG	0.11	0.67	0.0871	FALSE	59	21	0	114	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ATP6--MT-CO2	7	1	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	79	5	0.09	0.62	0.0762	0.0109	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH810_LUNG	0.09	0.62	0.0871	FALSE	59	21	0	114	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	4	12	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	4	0	0.8	1	0.0436	0.1307	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.8	1	0.1743	FALSE	344	826	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	4	12	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	11	0	0.59	1	0.0436	0.1307	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.59	1	0.1743	FALSE	344	826	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	SLC25A51--RP11-237M21.1	7	0	SLC25A51	1286	chr9:37904065:-	RP11-237M21.1	14011	chr9:65707615:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0762	0	SLC25A51->chr9:37879400-37904350:-,solute_carrier_family_25_member_51,RP11-237M21.1->chr9:65696702-65725786:-	NCIH810_LUNG	1	1	0.0762	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	U73166.2--GNAI2	7	0	U73166.2	3761	chr3:50300495:+	GNAI2	19414	chr3:50293624:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0762	0	LOCAL_REARRANGEMENT:+:[948],U73166.2->chr3:50297735-50300790:+,GNAI2->G_protein_subunit_alpha_i2,Oncogene{Bushman},chr3:50263724-50296787:+	NCIH810_LUNG	1	1	0.0762	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	5	7	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10703	43	0	0.22	0.0544	0.0762	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	0	0.22	0.1306	FALSE	231	217	16	283	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ATP6--MT-CO2	6	2	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	76	2	0.1	0.8	0.0653	0.0218	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH810_LUNG	0.1	0.8	0.0871	FALSE	59	21	0	114	0	FALSE	ACH-000789
NCIH810_LUNG	PCCA--CLYBL	6	2	PCCA	10753	chr13:100861717:+	CLYBL	38523	chr13:100511115:+	ONLY_REF_SPLICE	YES	27	12	0.23	0.4	0.0653	0.0218	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],{Klijn_CCL:Lung=1},PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit,CLYBL->chr13:100258919-100549387:+,citrate_lyase_beta_like	NCIH810_LUNG	0.23	0.4	0.0871	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	5	5	MT-ND4	1531	chrM:11290:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13749	4	0	0.71	0.0544	0.0544	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	0	0.71	0.1088	FALSE	231	217	16	283	0	FALSE	ACH-000789
NCIH810_LUNG	NRIP1--AF127936.7	6	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0653	0.0109	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH810_LUNG	1	1	0.0762	FALSE	292	1546	117	613	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	4	8	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1123	0	0.01	1	0.0436	0.0871	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	0.01	1	0.1307	FALSE	216	209	16	281	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	6	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0653	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	1	1	0.0653	FALSE	230	198	14	283	0	FALSE	ACH-000789
NCIH810_LUNG	RP11-347C12.2--LZIC	5	4	RP11-347C12.2	7835	chr16:30305887:-	LZIC	43265	chr1:9992030:-	ONLY_REF_SPLICE	YES	39	79	0.19	0.1	0.0544	0.0436	RP11-347C12.2->chr16:30234230-30346695:-,LZIC->chr1:9982173-10003465:-,leucine_zipper_and_CTNNBIP1_domain_containing	NCIH810_LUNG	0.1	0.19	0.098	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	4	7	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2046	43	0.01	0.2	0.0436	0.0762	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	0.01	0.2	0.1198	FALSE	216	209	16	281	0	FALSE	ACH-000789
NCIH810_LUNG	CTC-525D6.1--CYP2G2P	3	10	CTC-525D6.1	1282	chr19:30016378:-	CYP2G2P	20170	chr19:41561248:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.1089	CTC-525D6.1->chr19:29777918-30016659:-,CYP2G2P->chr19:41556354-41568349:-,cytochrome_P450_family_2_subfamily_G_member_2,_pseudogene	NCIH810_LUNG	1	1	0.1416	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	4	6	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.91	0.0436	0.0653	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.91	1	0.1089	FALSE	344	821	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	5	2	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0544	0.0218	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.78	1	0.0762	FALSE	344	821	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	WASF2--IFI6	5	2	WASF2	1173	chr1:27816497:-	IFI6	18294	chr1:27995857:-	ONLY_REF_SPLICE	YES	131	0	0.05	1	0.0544	0.0218	WASF2->Oncogene{Bushman},WAS_protein_family_member_2,chr1:27730730-27816669:-,IFI6->chr1:27992572-27998729:-,interferon_alpha_inducible_protein_6	NCIH810_LUNG	0.05	1	0.0762	TRUE	0	8	0	1	5	TRUE	ACH-000789
NCIH810_LUNG	POLR2L--MT-ND4L	5	1	POLR2L	2292	chr11:840321:-	MT-ND4L	7144	chrM:10471:+	INCL_NON_REF_SPLICE	YES	77	0	0.07	1	0.0544	0.0109	POLR2L->chr11:837356-842545:-,polymerase_(RNA)_II_subunit_L,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	0.07	1	0.0653	FALSE	0	0	0	4	0	FALSE	ACH-000789
NCIH810_LUNG	RP11-123O10.4--GRIP1	4	5	RP11-123O10.4	2167	chr12:67285681:-	GRIP1	11081	chr12:66990707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0.0544	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH810_LUNG	1	1	0.098	FALSE	0	5	0	12	0	FALSE	ACH-000789
NCIH810_LUNG	CCDC57--CCNE1	2	12	CCDC57	29723	chr17:80085568:-	CCNE1	44203	chr19:30308044:+	ONLY_REF_SPLICE	YES	36	298	0.28	0.04	0.0218	0.1307	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CCNE1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:30302805-30315215:+,cyclin_E1	NCIH810_LUNG	0.04	0.28	0.1525	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	1	1	0.0544	FALSE	344	821	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	TRIM55--ADHFE1	4	4	TRIM55	4843	chr8:67049425:+	ADHFE1	24128	chr8:67361100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0.0436	TRIM55->chr8:67039131-67087720:+,tripartite_motif_containing_55,ADHFE1->alcohol_dehydrogenase,_iron_containing_1,chr8:67342420-67383836:+	NCIH810_LUNG	1	1	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10404	43	0	0.19	0.0327	0.0762	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	0	0.19	0.1089	FALSE	231	215	16	283	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	2288	chrM:12047:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	YES	21	223	0.32	0.04	0.0327	0.0762	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	0.04	0.32	0.1089	FALSE	213	207	15	279	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	10703	161	0	0.06	0.0327	0.0762	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	0	0.06	0.1089	FALSE	231	217	16	283	0	FALSE	ACH-000789
NCIH810_LUNG	CTD-2008L17.1--RP11-456O19.2	4	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	2	1	0.75	0.86	0.0436	0.0218	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH810_LUNG	0.75	0.86	0.0654	FALSE	33	240	4	98	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1753	chrM:11512:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	10895	0	0	1	0.0327	0.0653	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	0	1	0.098	FALSE	231	217	16	283	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	10707	0	0	1	0.0327	0.0653	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	0	1	0.098	FALSE	231	217	16	283	0	FALSE	ACH-000789
NCIH810_LUNG	PCAT1--RP11-382A18.2	4	2	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0.0218	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	NCIH810_LUNG	1	1	0.0654	TRUE	4	84	1	46	0	FALSE	ACH-000789
NCIH810_LUNG	DHRS7B--PKHD1	4	1	DHRS7B	1081	chr17:21026757:+	PKHD1	87546	chr6:51514018:-	ONLY_REF_SPLICE	YES	0	9	1	0.36	0.0436	0.0109	{Klijn_CCL:Lung=1},DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)	NCIH810_LUNG	0.36	1	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	4	1	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	NO	5748	0	0	1	0.0436	0.0109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	0	1	0.0545	FALSE	230	193	14	283	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	4	1	MT-ND4	1200	chrM:10959:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	NO	8963	0	0	1	0.0436	0.0109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	0	1	0.0545	FALSE	230	193	14	283	0	FALSE	ACH-000789
NCIH810_LUNG	RP11-586L23.1--RNF150	4	1	RP11-586L23.1	2446	chr4:142195495:-	RNF150	10260	chr4:141974885:-	ONLY_REF_SPLICE	YES	1	1	0.83	0.83	0.0436	0.0109	NEIGHBORS[27862],RP11-586L23.1->chr4:142161893-142199943:-,RNF150->chr4:141780961-142134031:-,ring_finger_protein_150	NCIH810_LUNG	0.83	0.83	0.0545	FALSE	0	0	0	2	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1019	chrM:10778:+	MT-ND4L	5617	chrM:10708:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	1	1	0.0436	FALSE	344	821	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH810_LUNG	1	1	0.0436	FALSE	499	1288	110	792	0	FALSE	ACH-000789
NCIH810_LUNG	TPX2--HM13	4	0	TPX2	5884	chr20:30354485:+	HM13	26139	chr20:30115287:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	NCIH810_LUNG	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	CCDC57--CCNE1	3	3	CCDC57	24489	chr17:80109436:-	CCNE1	42403	chr19:30303439:+	ONLY_REF_SPLICE	YES	69	0	0.08	1	0.0327	0.0327	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CCNE1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:30302805-30315215:+,cyclin_E1	NCIH810_LUNG	0.08	1	0.0654	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	HSP90AB1--MT-RNR2	3	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1501	0	0	1	0.0327	0.0218	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH810_LUNG	0	1	0.0545	FALSE	13	9	0	364	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	12838	436	0	0.01	0.0327	0.0218	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	0	0.01	0.0545	FALSE	231	217	16	283	0	FALSE	ACH-000789
NCIH810_LUNG	NRG1--RTF1	3	2	NRG1	2344	chr8:31498245:+	RTF1	38948	chr15:41763370:+	ONLY_REF_SPLICE	YES	0	52	1	0.09	0.0327	0.0218	NRG1->chr8:31496902-32622548:+,neuregulin_1,RTF1->RTF1_homolog,_Paf1/RNA_polymerase_II_complex_component,chr15:41700606-41775761:+	NCIH810_LUNG	0.09	1	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.45	1	0.0327	0.0218	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH810_LUNG	0.45	1	0.0545	FALSE	125	705	46	456	0	FALSE	ACH-000789
NCIH810_LUNG	PCAT1--RP11-382A18.2	3	2	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.0218	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	NCIH810_LUNG	1	1	0.0545	TRUE	4	84	1	46	0	FALSE	ACH-000789
NCIH810_LUNG	RP11-108K3.1--GLDN	3	2	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0327	0.0218	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH810_LUNG	0.83	1	0.0545	FALSE	0	14	0	30	0	FALSE	ACH-000789
NCIH810_LUNG	TPCN1--DTX1	3	2	TPCN1	7733	chr12:113698297:+	DTX1	35678	chr12:113495254:+	ONLY_REF_SPLICE	YES	20	0	0.2	1	0.0327	0.0218	TPCN1->chr12:113658855-113736390:+,two_pore_segment_channel_1,DTX1->chr12:113494514-113535833:+,deltex_1	NCIH810_LUNG	0.2	1	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	NO	9026	0	0	1	0.0327	0.0109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	0	1	0.0436	FALSE	230	197	14	283	0	FALSE	ACH-000789
NCIH810_LUNG	RP11-108K3.1--GLDN	3	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0327	0.0109	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH810_LUNG	0.8	1	0.0436	FALSE	1	20	0	46	0	FALSE	ACH-000789
NCIH810_LUNG	RP11-319G9.5--WWOX	3	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	NO	0	7	1	0.36	0.0327	0.0109	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	NCIH810_LUNG	0.36	1	0.0436	FALSE	154	425	28	76	0	FALSE	ACH-000789
NCIH810_LUNG	RP11-586L23.1--RNF150	3	1	RP11-586L23.1	2430	chr4:142195511:-	RNF150	10260	chr4:141974885:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.8	0.0327	0.0109	NEIGHBORS[27862],RP11-586L23.1->chr4:142161893-142199943:-,RNF150->chr4:141780961-142134031:-,ring_finger_protein_150	NCIH810_LUNG	0.8	1	0.0436	FALSE	0	0	0	2	0	FALSE	ACH-000789
NCIH810_LUNG	CPSF6--POGZ	3	0	CPSF6	11046	chr12:69656342:+	POGZ	37023	chr1:151380716:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,POGZ->chr1:151375200-151431941:-,pogo_transposable_element_with_ZNF_domain	NCIH810_LUNG	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	HSPBP1--GRK5	3	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH810_LUNG	1	1	0.0327	TRUE	1	39	0	134	39	FALSE	ACH-000789
NCIH810_LUNG	MT-ATP6--MT-CO2	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH810_LUNG	1	1	0.0327	FALSE	59	21	0	114	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH810_LUNG	1	1	0.0327	FALSE	231	204	14	283	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1026	chrM:10785:+	MT-ND4L	5631	chrM:10722:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH810_LUNG	1	1	0.0327	FALSE	344	821	44	306	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH810_LUNG	1	1	0.0327	FALSE	499	1288	110	792	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH810_LUNG	1	1	0.0327	FALSE	499	1288	110	792	0	FALSE	ACH-000789
NCIH810_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH810_LUNG	1	1	0.0327	FALSE	499	1288	110	792	0	FALSE	ACH-000789
NCIH810_LUNG	NPM1P4--NCL	3	0	NPM1P4	1488	chr13:28270854:-	NCL	10603	chr2:232325473:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	NCIH810_LUNG	1	1	0.0327	TRUE	0	0	0	3	0	TRUE	ACH-000789
NCIH810_LUNG	NPM1P4--NCL	3	0	NPM1P4	1488	chr13:28270854:-	NCL	10594	chr2:232325482:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	NCIH810_LUNG	1	1	0.0327	TRUE	0	0	0	3	0	TRUE	ACH-000789
NCIH810_LUNG	NPM1P4--NCL	3	0	NPM1P4	1486	chr13:28270856:-	NCL	9637	chr2:232326439:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	NPM1P4->chr13:28270530-28271341:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_4,NCL->chr2:232318242-232348352:-,nucleolin	NCIH810_LUNG	1	1	0.0327	TRUE	0	0	0	3	0	TRUE	ACH-000789
NCIH810_LUNG	SLC16A3--RP3-335N17.2	2	4	SLC16A3	10170	chr17:80195769:+	RP3-335N17.2	19930	chr6:51487158:+	ONLY_REF_SPLICE	YES	129	1	0.04	0.86	0.0218	0.0436	SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3,RP3-335N17.2->chr6:51464521-51487682:+	NCIH810_LUNG	0.04	0.86	0.0654	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	VWDE--PHF14	3	0	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH810_LUNG	1	1	0.0327	TRUE	0	6	0	17	2	TRUE	ACH-000789
NCIH810_LUNG	RP11-108K3.1--GLDN	2	3	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0218	0.0327	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH810_LUNG	0.83	1	0.0545	FALSE	0	19	0	46	0	FALSE	ACH-000789
NCIH810_LUNG	CNOT1--RP11-481J2.2	1	6	CNOT1	16673	chr16:58608513:-	RP11-481J2.2	56935	chr16:58495375:+	ONLY_REF_SPLICE	YES	60	5	0.1	0.58	0.0109	0.0653	LOCAL_INVERSION:-:+:[57481],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,RP11-481J2.2->chr16:58455230-58496374:+	NCIH810_LUNG	0.1	0.58	0.0762	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.27	1	0.0218	0.0218	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH810_LUNG	0.27	1	0.0436	FALSE	164	806	69	479	0	FALSE	ACH-000789
NCIH810_LUNG	TTC28--ZMAT5	2	2	TTC28	2523	chr22:29025540:-	ZMAT5	45637	chr22:30138469:-	ONLY_REF_SPLICE	YES	2	45	0.67	0.08	0.0218	0.0218	TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28,ZMAT5->chr22:30126945-30163000:-,zinc_finger_matrin-type_5	NCIH810_LUNG	0.08	0.67	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0.0109	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH810_LUNG	1	1	0.0327	FALSE	93	270	15	244	0	FALSE	ACH-000789
NCIH810_LUNG	AC003991.3--GCA	2	0	AC003991.3	9701	chr7:87901185:+	GCA	21533	chr2:163204088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	AC003991.3->chr7:87848674-87921781:+,GCA->chr2:163175350-163228105:+,grancalcin	NCIH810_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	AEBP2--PLEKHA5	2	0	AEBP2	2869	chr12:19593304:+	PLEKHA5	29672	chr12:19406874:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_FI:{Testis=[count:3=pct:2.9]},GTEx_v2:{count=2;pct=0.02%;dist=Testis=2},LOCAL_REARRANGEMENT:+:[27645],AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5	NCIH810_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	FKBP15--HDHD3	2	0	FKBP15	22912	chr9:115935733:-	HDHD3	36384	chr9:116139205:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	FKBP15->FK506_binding_protein_15,chr9:115923286-115983641:-,HDHD3->chr9:116135699-116139279:-,haloacid_dehalogenase_like_hydrolase_domain_containing_3	NCIH810_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	MYO6--BAI3	2	0	MYO6	1232	chr6:76459140:+	BAI3	67743	chr6:70034764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	MYO6->chr6:76458909-76629254:+,myosin_VI,BAI3->chr6:69345259-70099403:+	NCIH810_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	NRIP1--AF127936.7	2	0	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH810_LUNG	1	1	0.0218	FALSE	8	57	1	47	0	FALSE	ACH-000789
NCIH810_LUNG	PER2--AC012485.2	2	0	PER2	18646	chr2:239164298:-	AC012485.2	30719	chr2:239208829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	LOCAL_REARRANGEMENT:-:[8608],PER2->chr2:239152679-239198743:-,period_circadian_clock_2,AC012485.2->chr2:239207351-239209261:-	NCIH810_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	SLC16A3--RP3-335N17.2	1	4	SLC16A3	10170	chr17:80195769:+	RP3-335N17.2	18324	chr6:51470062:+	ONLY_REF_SPLICE	YES	129	0	0.04	1	0.0109	0.0436	SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3,RP3-335N17.2->chr6:51464521-51487682:+	NCIH810_LUNG	0.04	1	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH810_LUNG	1	1	0.0218	TRUE	5	8	0	33	0	FALSE	ACH-000789
NCIH810_LUNG	TPX2--HM13	2	0	TPX2	2458	chr20:30330450:+	HM13	27706	chr20:30125982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	NCIH810_LUNG	1	1	0.0218	TRUE	0	0	0	2	0	TRUE	ACH-000789
NCIH810_LUNG	VEZT--UBE2N	2	0	VEZT	1141	chr12:95611662:+	UBE2N	34097	chr12:93805075:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	VEZT->chr12:95611522-95696566:+,vezatin,_adherens_junctions_transmembrane_protein,UBE2N->chr12:93799449-93836038:-,ubiquitin_conjugating_enzyme_E2_N	NCIH810_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	YARS--CSMD2	2	0	YARS	1966	chr1:33282789:-	CSMD2	26985	chr1:34312597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase,CSMD2->CUB_and_Sushi_multiple_domains_2,chr1:33979609-34631443:-	NCIH810_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	GDAP1--RP11-758M4.1	1	3	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	161	7	0.02	0.36	0.0109	0.0327	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH810_LUNG	0.02	0.36	0.0436	TRUE	7	28	0	43	0	FALSE	ACH-000789
NCIH810_LUNG	RP11-347C12.2--LZIC	1	2	RP11-347C12.2	6709	chr16:30309698:-	LZIC	44347	chr1:9990515:-	ONLY_REF_SPLICE	YES	23	67	0.12	0.04	0.0109	0.0218	RP11-347C12.2->chr16:30234230-30346695:-,LZIC->chr1:9982173-10003465:-,leucine_zipper_and_CTNNBIP1_domain_containing	NCIH810_LUNG	0.04	0.12	0.0327	TRUE	0	0	0	1	0	FALSE	ACH-000789
NCIH810_LUNG	CPSF6--DAP3	1	1	CPSF6	11046	chr12:69656342:+	DAP3	35386	chr1:155708400:+	ONLY_REF_SPLICE	NO	174	56	0.01	0.03	0.0109	0.0109	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	NCIH810_LUNG	0.01	0.03	0.0218	FALSE	0	1	0	3	0	FALSE	ACH-000789
NCIH810_LUNG	DCLK2--LRBA	1	1	DCLK2	3510	chr4:151023964:+	LRBA	64378	chr4:151604869:-	ONLY_REF_SPLICE	YES	30	46	0.06	0.04	0.0109	0.0109	LOCAL_INVERSION:+:-:[6985],DCLK2->chr4:150999426-151178609:+,doublecortin_like_kinase_2,LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-	NCIH810_LUNG	0.04	0.06	0.0218	TRUE	0	0	0	1	0	FALSE	ACH-000789
NCIH810_LUNG	FBXL5--RP11-484O2.1	1	1	FBXL5	16339	chr4:15613889:-	RP11-484O2.1	22958	chr4:15364147:-	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.0109	0.0109	FBXL5->F-box_and_leucine-rich_repeat_protein_5,chr4:15606162-15683302:-,RP11-484O2.1->chr4:15359765-15421656:-	NCIH810_LUNG	0.11	1	0.0218	TRUE	1	6	0	5	2	TRUE	ACH-000789
NCIH810_LUNG	RP11-586L23.1--RNF150	1	1	RP11-586L23.1	1346	chr4:142199598:-	RNF150	10260	chr4:141974885:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0109	0.0109	NEIGHBORS[27862],RP11-586L23.1->chr4:142161893-142199943:-,RNF150->chr4:141780961-142134031:-,ring_finger_protein_150	NCIH810_LUNG	0.67	1	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000789
NCIH810_LUNG	TIMM23--RP11-464F9.1	1	1	TIMM23	5841	chr10:51610393:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	148	0	0.01	1	0.0109	0.0109	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH810_LUNG	0.01	1	0.0218	FALSE	1	12	0	11	0	FALSE	ACH-000789
NCIH810_LUNG	XRN1--ATR	1	1	XRN1	4470	chr3:142151503:-	ATR	56247	chr3:142279296:-	ONLY_REF_SPLICE	YES	8	15	0.2	0.12	0.0109	0.0109	LOCAL_REARRANGEMENT:-:[1173],XRN1->5'-3'_exoribonuclease_1,chr3:142025449-142166904:-,ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-	NCIH810_LUNG	0.12	0.2	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000789
NCIH810_LUNG	ZMYM4--SFPQ	1	1	ZMYM4	3227	chr1:35791006:+	SFPQ	47595	chr1:35643637:-	ONLY_REF_SPLICE	YES	24	159	0.08	0.01	0.0109	0.0109	GTEx_FI:{Brain=[count:2=pct:0.3],Colon=[count:1=pct:0.5],Ovary=[count:1=pct:1.9]},LOCAL_INVERSION:+:-:[75819],ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	NCIH810_LUNG	0.01	0.08	0.0218	FALSE	2	10	0	3	0	FALSE	ACH-000789
LN428_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	69	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7558	0.3505	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	1.1063	TRUE	508	994	45	981	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	45	30	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	23	41	0.77	0.65	0.4929	0.3286	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	LN428_CENTRAL_NERVOUS_SYSTEM	0.65	0.77	0.8215	TRUE	181	1564	124	196	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	CTD-2544L4.1--TBC1D7	45	5	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5189	chr6:13328738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4929	0.0548	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.5477	TRUE	0	0	0	5	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	44	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.482	0.0329	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.5149	FALSE	462	80	0	856	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	CTD-2544L4.1--TBC1D7	43	5	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5177	chr6:13328750:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.471	0.0548	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.5258	TRUE	0	0	0	5	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTATP6P1--MTND2P28	42	0	MTATP6P1	1098	chr1:569173:+	MTND2P28	5521	chr1:565859:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4601	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.4601	TRUE	20	3	0	12	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	CTD-2544L4.1--TBC1D7	37	5	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5183	chr6:13328744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4053	0.0548	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.4601	TRUE	0	0	0	5	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	37	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	290	3	0.12	0.93	0.4053	0.011	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LN428_CENTRAL_NERVOUS_SYSTEM	0.12	0.93	0.4163	TRUE	519	3926	326	965	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RSBN1L--PTPN12	33	5	RSBN1L	10808	chr7:77407763:+	PTPN12	36506	chr7:77256022:+	ONLY_REF_SPLICE	YES	55	75	0.41	0.34	0.3615	0.0548	LOCAL_REARRANGEMENT:+:[56372],RSBN1L->chr7:77325760-77412339:+,round_spermatid_basic_protein_1_like,PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12	LN428_CENTRAL_NERVOUS_SYSTEM	0.34	0.41	0.4163	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTAP--RP11-399D6.2	28	12	MTAP	12211	chr9:21859424:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3067	0.1314	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.4381	TRUE	0	0	0	2	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTAP--RP11-399D6.2	27	8	MTAP	9899	chr9:21854869:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	12	0	0.74	1	0.2958	0.0876	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	LN428_CENTRAL_NERVOUS_SYSTEM	0.74	1	0.3834	TRUE	0	0	0	4	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	20	21	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	4	0	0.91	1	0.2191	0.23	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	LN428_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.4491	TRUE	0	48	0	65	48	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	USP20--HMCN2	24	0	USP20	1802	chr9:132597778:+	HMCN2	25386	chr9:133046882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2629	0	USP20->chr9:132596977-132644107:+,ubiquitin_specific_peptidase_20,HMCN2->chr9:133046882-133309510:+,hemicentin_2	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.2629	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	22	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.241	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.241	TRUE	7	10	0	216	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	19	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2081	0.0657	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN428_CENTRAL_NERVOUS_SYSTEM	0.96	1	0.2738	FALSE	499	1288	110	792	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AP000345.1	18	7	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.1972	0.0767	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	LN428_CENTRAL_NERVOUS_SYSTEM	0.96	1	0.2739	TRUE	0	8	0	37	1	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	17	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	1	61	0.95	0.24	0.1862	0.0219	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	LN428_CENTRAL_NERVOUS_SYSTEM	0.24	0.95	0.2081	TRUE	347	1186	183	220	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	16	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.95	0.1753	0.0438	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LN428_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.2191	FALSE	416	2512	207	587	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	16	3	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	3	0	0.86	1	0.1753	0.0329	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	LN428_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.2082	TRUE	6	15	3	35	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	12	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.87	1	0.1314	0.1643	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN428_CENTRAL_NERVOUS_SYSTEM	0.87	1	0.2957	FALSE	499	1288	110	792	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	10	23	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1095	0.2519	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.3614	FALSE	499	1288	110	792	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	14	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.61	1	0.1534	0.0548	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN428_CENTRAL_NERVOUS_SYSTEM	0.61	1	0.2082	FALSE	125	705	46	456	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	43	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0.471	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.5148	FALSE	499	1288	110	792	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTATP6P1--MTND2P28	6	35	MTATP6P1	1249	chr1:569324:+	MTND2P28	4816	chr1:565154:+	INCL_NON_REF_SPLICE	YES	3623	3615	0.01	0.01	0.0657	0.3834	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.4491	TRUE	20	3	0	12	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP4-565E6.1--HYDIN	12	7	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.95	0.1314	0.0767	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	LN428_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.2081	TRUE	456	1387	91	133	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	11	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1205	0.0657	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN428_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.1862	FALSE	499	1288	110	792	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	SLC1A5--MT-ND4L	12	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	966	0	0.01	1	0.1314	0.0219	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN428_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.1533	FALSE	0	0	0	189	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	12	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1314	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.1314	TRUE	1	0	0	97	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	8	14	RP5-857K21.7	1231	chr1:568367:+	MTND2P28	4713	chr1:565050:+	INCL_NON_REF_SPLICE	YES	300	0	0.07	1	0.0876	0.1534	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.241	TRUE	1	0	0	3	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	3	33	RP5-857K21.7	1553	chr1:568689:+	MTND2P28	5209	chr1:565546:+	INCL_NON_REF_SPLICE	YES	1	4779	0.97	0.01	0.0329	0.3615	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0.01	0.97	0.3944	TRUE	1	0	0	3	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	DIS3L2--SPP2	11	0	DIS3L2	18560	chr2:233114056:+	SPP2	43895	chr2:234975177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1205	0	DIS3L2->DIS3_like_3'-5'_exoribonuclease_2,chr2:232825955-233209060:+,SPP2->chr2:234959323-234985778:+,secreted_phosphoprotein_2	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.1205	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	10	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1095	0.0438	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.1533	FALSE	462	80	0	856	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	27	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.0438	0.2958	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN428_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.3396	FALSE	499	1288	110	792	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	10	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.1095	0.0329	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN428_CENTRAL_NERVOUS_SYSTEM	0.87	1	0.1424	FALSE	292	1546	117	613	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTATP6P1--MTND2P28	6	17	MTATP6P1	1133	chr1:569208:+	MTND2P28	4695	chr1:565033:+	INCL_NON_REF_SPLICE	YES	2844	0	0.01	1	0.0657	0.1862	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.2519	TRUE	20	3	0	12	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	3	29	RP5-857K21.7	1440	chr1:568576:+	MTND2P28	5090	chr1:565427:+	INCL_NON_REF_SPLICE	YES	102	4834	0.24	0.01	0.0329	0.3177	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0.01	0.24	0.3506	TRUE	1	0	0	3	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	7	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	57	55	0.24	0.25	0.0767	0.1205	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LN428_CENTRAL_NERVOUS_SYSTEM	0.24	0.25	0.1972	TRUE	267	562	48	632	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	27	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.0329	0.2958	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN428_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.3287	FALSE	499	1288	110	792	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	9	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0986	0.0219	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.1205	TRUE	477	1352	189	275	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	7	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0767	0.0876	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.1643	FALSE	407	2205	196	549	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	5	14	RP5-857K21.7	1234	chr1:568370:+	MTND2P28	4717	chr1:565054:+	INCL_NON_REF_SPLICE	YES	301	0	0.06	1	0.0548	0.1534	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.2082	TRUE	1	0	0	3	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	3	21	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	4	0	0.86	1	0.0329	0.23	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	LN428_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.2629	TRUE	0	35	0	55	35	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP11-6N13.1--CTD-2374C24.1	7	5	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.0767	0.0548	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	LN428_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.1315	TRUE	5	4	0	46	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	7	5	RP5-857K21.7	1281	chr1:568417:+	MTND2P28	5407	chr1:565744:+	INCL_NON_REF_SPLICE	YES	375	1445	0.03	0.01	0.0767	0.0548	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.1315	TRUE	1	0	0	3	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTATP6P1--MTND2P28	8	0	MTATP6P1	1122	chr1:569197:+	MTND2P28	5368	chr1:565706:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0876	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0876	TRUE	20	3	0	12	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	8	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0876	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0876	TRUE	4	2	0	28	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AP000345.1	7	1	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	3	0	0.73	1	0.0767	0.011	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	LN428_CENTRAL_NERVOUS_SYSTEM	0.73	1	0.0877	TRUE	4	17	0	31	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTATP6P1--MTND2P28	6	5	MTATP6P1	1108	chr1:569183:+	MTND2P28	4904	chr1:565242:+	INCL_NON_REF_SPLICE	YES	1586	6342	0.01	0	0.0657	0.0548	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.1205	TRUE	20	3	0	12	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	SLC1A5--MT-ND4L	6	5	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	952	0	0.01	1	0.0657	0.0548	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN428_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.1205	FALSE	0	0	0	189	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	4	12	RP5-857K21.7	1274	chr1:568410:+	MTND2P28	4915	chr1:565252:+	INCL_NON_REF_SPLICE	YES	366	5985	0.04	0	0.0438	0.1314	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0	0.04	0.1752	TRUE	1	0	0	3	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTAP--RP11-399D6.2	3	15	MTAP	12211	chr9:21859424:+	RP11-399D6.2	23187	chr9:22646222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0.1643	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.1972	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	14	MT-ND6	1144	chrM:14530:-	MT-TE	4573	chrM:14695:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0329	0.1534	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN428_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.1863	FALSE	499	1288	110	792	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	hsa-mir-6723--MTND2P28	5	6	hsa-mir-6723	1554	chr1:567007:+	MTND2P28	5588	chr1:565064:+	INCL_NON_REF_SPLICE	YES	1629	0	0.01	1	0.0548	0.0657	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.1205	TRUE	2	1	0	4	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	APP--MT-CO3	5	5	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	2091	20675	0	0	0.0548	0.0548	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	LN428_CENTRAL_NERVOUS_SYSTEM	0	0	0.1096	FALSE	0	0	0	26	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	5	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0.0438	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0986	FALSE	462	80	0	856	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	6	0	PLXDC1	27476	chr17:37222884:-	TAF13	38494	chr1:109605673:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0657	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0657	TRUE	7	10	0	216	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTATP6P1--MTND2P28	5	3	MTATP6P1	1140	chr1:569215:+	MTND2P28	5395	chr1:565733:+	INCL_NON_REF_SPLICE	YES	3377	1832	0	0	0.0548	0.0329	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0	0	0.0877	FALSE	20	3	0	12	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	hsa-mir-6723--MTND2P28	4	7	hsa-mir-6723	1527	chr1:566980:+	MTND2P28	5560	chr1:565036:+	INCL_NON_REF_SPLICE	YES	1633	0	0.01	1	0.0438	0.0767	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.1205	TRUE	2	1	0	4	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	4	6	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	28	41	0.26	0.2	0.0438	0.0657	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	LN428_CENTRAL_NERVOUS_SYSTEM	0.2	0.26	0.1095	TRUE	105	90	7	93	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	5	2	RP5-857K21.7	1320	chr1:568456:+	MTND2P28	5550	chr1:565887:+	INCL_NON_REF_SPLICE	YES	359	43	0.02	0.14	0.0548	0.0219	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0.02	0.14	0.0767	TRUE	1	0	0	3	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP11-307P5.1--SASH1	4	5	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	5	1	0.64	0.0438	0.0548	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	LN428_CENTRAL_NERVOUS_SYSTEM	0.64	1	0.0986	TRUE	0	2	0	37	2	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	NIPA2--POLA1	5	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0548	TRUE	46	1352	75	139	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	5	0	RP5-857K21.7	1374	chr1:568510:+	MTND2P28	5601	chr1:565938:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0548	TRUE	1	0	0	3	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	5	0	RP5-857K21.7	1240	chr1:568376:+	MTND2P28	5550	chr1:565887:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0548	TRUE	1	0	0	3	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTATP6P1--MTND2P28	3	7	MTATP6P1	1122	chr1:569197:+	MTND2P28	4682	chr1:565020:+	INCL_NON_REF_SPLICE	YES	2082	0	0	1	0.0329	0.0767	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0	1	0.1096	TRUE	20	3	0	12	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTATP6P1--MTND2P28	4	1	MTATP6P1	1410	chr1:569485:+	MTND2P28	5601	chr1:565939:+	INCL_NON_REF_SPLICE	YES	3952	12	0	0.29	0.0438	0.011	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0	0.29	0.0548	FALSE	20	3	0	12	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	4	1	RP5-857K21.7	1359	chr1:568495:+	MTND2P28	5582	chr1:565919:+	INCL_NON_REF_SPLICE	YES	109	23	0.04	0.18	0.0438	0.011	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0.04	0.18	0.0548	TRUE	1	0	0	3	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	hsa-mir-6723--MTND2P28	3	5	hsa-mir-6723	1567	chr1:567020:+	MTND2P28	5598	chr1:565074:+	INCL_NON_REF_SPLICE	YES	1629	0	0	1	0.0329	0.0548	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0	1	0.0877	FALSE	2	1	0	4	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	hsa-mir-6723--MTND2P28	4	1	hsa-mir-6723	1578	chr1:567031:+	MTND2P28	6224	chr1:565700:+	INCL_NON_REF_SPLICE	YES	1628	2723	0	0	0.0438	0.011	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0	0	0.0548	FALSE	2	1	0	4	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	AHCYL2--DCC	4	0	AHCYL2	1417	chr7:128865280:+	DCC	40737	chr18:50432414:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0438	0	AHCYL2->adenosylhomocysteinase_like_2,chr7:128864864-129070052:+,DCC->DCC_netrin_1_receptor,Oncogene{Bushman},chr18:49866542-51057784:+	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0438	FALSE	499	1288	110	792	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0438	FALSE	499	1288	110	792	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	3	4	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0.0438	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0767	FALSE	462	80	0	856	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTATP6P1--MTND2P28	4	0	MTATP6P1	1120	chr1:569195:+	MTND2P28	5482	chr1:565820:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0438	TRUE	20	3	0	12	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	4	0	RP5-857K21.7	1222	chr1:568358:+	MTND2P28	5582	chr1:565919:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0438	TRUE	1	0	0	3	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP5-857K21.7--MTND2P28	4	0	RP5-857K21.7	1276	chr1:568412:+	MTND2P28	5539	chr1:565876:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	LOCAL_REARRANGEMENT:+:[2074],RP5-857K21.7->chr1:568137-568818:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0438	TRUE	1	0	0	3	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	hsa-mir-6723--MTND2P28	3	2	hsa-mir-6723	1937	chr1:567390:+	MTND2P28	5760	chr1:565236:+	INCL_NON_REF_SPLICE	NO	4082	6668	0	0	0.0329	0.0219	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	0	0	0.0548	FALSE	2	1	0	4	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	3	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	NO	1	99	0.8	0.04	0.0329	0.011	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	LN428_CENTRAL_NERVOUS_SYSTEM	0.04	0.8	0.0439	TRUE	15	36	8	26	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MYO16--MYO16-AS1	3	1	MYO16	39203	chr13:109779898:+	MYO16-AS1	50137	chr13:109819652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0.011	NEIGHBORS_OVERLAP:+:-:[37581],MYO16->chr13:109248500-109860355:+,myosin_XVI,MYO16-AS1->MYO16_antisense_RNA_1,chr13:109816250-109853831:-	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0439	FALSE	0	0	0	1	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	3	0	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0329	TRUE	1	0	0	97	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	3	0	FTH1	1222	chr11:61734911:-	ACTB	12534	chr7:5569289:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0329	TRUE	1	0	0	97	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTATP6P1--MTND2P28	3	0	MTATP6P1	1086	chr1:569161:+	MTND2P28	4682	chr1:565020:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0329	TRUE	20	3	0	12	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTATP6P1--MTND2P28	3	0	MTATP6P1	1121	chr1:569196:+	MTND2P28	5397	chr1:565735:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0329	TRUE	20	3	0	12	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTATP6P1--MTND2P28	3	0	MTATP6P1	1105	chr1:569180:+	MTND2P28	5370	chr1:565708:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0329	TRUE	20	3	0	12	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTATP6P1--MTND2P28	3	0	MTATP6P1	1109	chr1:569184:+	MTND2P28	5532	chr1:565870:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0329	TRUE	20	3	0	12	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MTATP6P1--MTND2P28	3	0	MTATP6P1	1115	chr1:569190:+	MTND2P28	5268	chr1:565606:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0329	TRUE	20	3	0	12	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	SPARC--FTL	3	0	SPARC	11851	chr5:151045958:-	FTL	19036	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx&tcga_normals:4/3694=0.11%,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0329	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	15	0	0.35	1	0.011	0.0767	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN428_CENTRAL_NERVOUS_SYSTEM	0.35	1	0.0877	FALSE	164	806	69	479	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.88	0.88	0.011	0.0657	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN428_CENTRAL_NERVOUS_SYSTEM	0.88	0.88	0.0767	FALSE	467	2173	244	435	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.011	0.0548	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN428_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.0658	FALSE	515	4851	409	746	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RSBN1L--PTPN12	2	1	RSBN1L	9567	chr7:77402631:+	PTPN12	36506	chr7:77256022:+	ONLY_REF_SPLICE	YES	54	75	0.05	0.04	0.0219	0.011	LOCAL_REARRANGEMENT:+:[56372],RSBN1L->chr7:77325760-77412339:+,round_spermatid_basic_protein_1_like,PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12	LN428_CENTRAL_NERVOUS_SYSTEM	0.04	0.05	0.0329	TRUE	0	0	0	1	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	ATXN7--DOCK3	2	0	ATXN7	15446	chr3:63976535:+	DOCK3	28913	chr3:50879106:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	ATXN7->ataxin_7,chr3:63850233-63989138:+,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	BSDC1--RBBP4	2	0	BSDC1	1652	chr1:32859681:-	RBBP4	25601	chr1:33138051:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	BSDC1->BSD_domain_containing_1,chr1:32830704-32860332:-,RBBP4->chr1:33116743-33151812:+,retinoblastoma_binding_protein_4	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	FAM91A1--ERCC4	2	0	FAM91A1	3538	chr8:124787538:+	ERCC4	39395	chr16:14031623:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	FAM91A1->chr8:124780696-124827692:+,family_with_sequence_similarity_91_member_A1,ERCC4->Oncogene{Bushman},chr16:14014014-14046202:+,excision_repair_cross-complementation_group_4	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	KMT2E--TIAM2	2	0	KMT2E	1357	chr7:104654982:+	TIAM2	55130	chr6:155465740:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,TIAM2->T-cell_lymphoma_invasion_and_metastasis_2,chr6:155153831-155578857:+	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	MRPL39--ZNF766	2	0	MRPL39	2069	chr21:26978761:-	ZNF766	22848	chr19:52793319:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	MRPL39->chr21:26957968-26979829:-,mitochondrial_ribosomal_protein_L39,ZNF766->chr19:52772824-52795977:+,zinc_finger_protein_766	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	7	2	11	5	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP11-319G9.5--WWOX	2	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	FALSE	154	425	28	76	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP11-473M20.14--LITAF	2	0	RP11-473M20.14	8505	chr16:3174488:-	LITAF	24018	chr16:11650591:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	RP11-473M20.14->chr16:3166043-3184883:-,LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP11-6N13.1--CTD-2374C24.1	1	4	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	NO	3	2	0.62	0.71	0.011	0.0438	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	LN428_CENTRAL_NERVOUS_SYSTEM	0.62	0.71	0.0548	TRUE	1	1	0	17	1	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP11-6N13.1--CTD-2374C24.1	1	4	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.011	0.0438	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	LN428_CENTRAL_NERVOUS_SYSTEM	0.62	1	0.0548	TRUE	5	12	0	42	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	62	24	1	171	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	TRA2B--TBC1D5	2	0	TRA2B	1312	chr3:185655613:-	TBC1D5	58037	chr3:17349626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	1	2	AC104389.28	2337	chr11:5368106:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.011	0.0219	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	LN428_CENTRAL_NERVOUS_SYSTEM	0.6	1	0.0329	TRUE	0	0	0	9	0	TRUE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	1	2	CTD-2337A12.1	7488	chr5:95966789:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	61	1	0.05	0.011	0.0219	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	LN428_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.0329	TRUE	18	50	10	12	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	AC003006.7--PSMA7	1	1	AC003006.7	1200	chr19:58193612:+	PSMA7	9800	chr20:60716000:-	ONLY_REF_SPLICE	YES	4	2143	0.33	0	0.011	0.011	AC003006.7->chr19:58193413-58264943:+,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	LN428_CENTRAL_NERVOUS_SYSTEM	0	0.33	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	CD99L2--MTMR1	1	1	CD99L2	9528	chrX:149962164:-	MTMR1	26351	chrX:149895687:+	ONLY_REF_SPLICE	NO	330	34	0.01	0.06	0.011	0.011	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[1234],CD99L2->CD99_molecule_like_2,chrX:149934810-150067289:-,MTMR1->chrX:149861435-149933576:+,myotubularin_related_protein_1	LN428_CENTRAL_NERVOUS_SYSTEM	0.01	0.06	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	ISG20L2--PRCC	1	1	ISG20L2	5614	chr1:156693940:-	PRCC	13734	chr1:156752074:+	ONLY_REF_SPLICE	YES	140	162	0.01	0.01	0.011	0.011	LOCAL_INVERSION:-:+:[21811],ISG20L2->chr1:156691683-156698591:-,interferon_stimulated_exonuclease_gene_20kDa_like_2,PRCC->Oncogene{Bushman},chr1:156720402-156770607:+,papillary_renal_cell_carcinoma_(translocation-associated)	LN428_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	RP11-155G15.2--RP11-1E3.1	1	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0.011	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	LN428_CENTRAL_NERVOUS_SYSTEM	1	1	0.022	FALSE	46	201	11	112	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	SNHG12--TAF12	1	1	SNHG12	4451	chr1:28906045:-	TAF12	10963	chr1:28948677:-	ONLY_REF_SPLICE	YES	151	14	0.01	0.12	0.011	0.011	LOCAL_REARRANGEMENT:-:[6340],SNHG12->chr1:28905050-28909495:-,small_nucleolar_RNA_host_gene_12,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	LN428_CENTRAL_NERVOUS_SYSTEM	0.01	0.12	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	SUMF2--CCT6A	1	1	SUMF2	3658	chr7:56140804:+	CCT6A	16259	chr7:56123317:+	ONLY_REF_SPLICE	YES	1737	1645	0	0	0.011	0.011	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[13],SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	LN428_CENTRAL_NERVOUS_SYSTEM	0	0	0.022	FALSE	0	0	0	2	0	FALSE	ACH-000455
LN428_CENTRAL_NERVOUS_SYSTEM	TFRC--RABGGTB	1	1	TFRC	19706	chr3:195780289:-	RABGGTB	28989	chr1:76253182:+	ONLY_REF_SPLICE	YES	1296	56	0	0.03	0.011	0.011	TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor,RABGGTB->Oncogene{Bushman},Rab_geranylgeranyltransferase_beta_subunit,chr1:76251879-76260764:+	LN428_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000455
DM3_FIBROBLAST	PLXDC1--TAF13	11	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1719	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	DM3_FIBROBLAST	1	1	0.1719	TRUE	7	10	0	216	0	FALSE	ACH-000742
DM3_FIBROBLAST	ATF6B--EXT2	9	0	ATF6B	4740	chr6:32088598:-	EXT2	35688	chr11:44265893:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1406	0	ATF6B->activating_transcription_factor_6_beta,chr6:32065953-32096030:-,EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2	DM3_FIBROBLAST	1	1	0.1406	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	RABAC1--ATP5SL	5	0	RABAC1	2038	chr19:42462505:-	ATP5SL	11598	chr19:41939272:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0781	0	RABAC1->Rab_acceptor_1,chr19:42460833-42463542:-,ATP5SL->ATP5S_like,chr19:41937223-41946622:-	DM3_FIBROBLAST	1	1	0.0781	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	APP--CALR	4	0	APP	11587	chr21:27394262:-	CALR	36022	chr19:13054563:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	GTEx&tcga_normals:3/3694=0.08%,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,CALR->calreticulin,chr19:13049392-13055303:+	DM3_FIBROBLAST	1	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	CAB39--SPSB1	4	0	CAB39	14130	chr2:231684910:+	SPSB1	21675	chr1:9415991:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	CAB39->calcium_binding_protein_39,chr2:231577560-231685790:+,SPSB1->chr1:9352939-9429591:+,splA/ryanodine_receptor_domain_and_SOCS_box_containing_1	DM3_FIBROBLAST	1	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	CD63--SEPT8	4	0	CD63	4855	chr12:56119637:-	SEPT8	21053	chr5:132093507:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	CD63->CD63_molecule,chr12:56119107-56123491:-,SEPT8->chr5:132086509-132142933:-,septin_8	DM3_FIBROBLAST	1	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	HEXB--RPS3	4	0	HEXB	15929	chr5:74016543:+	RPS3	26207	chr11:75115878:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	HEXB->chr5:73935848-74018472:+,hexosaminidase_subunit_beta,RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3	DM3_FIBROBLAST	1	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	CUTA--S100A6	3	1	CUTA	1741	chr6:33385354:-	S100A6	6779	chr1:153507818:-	INCL_NON_REF_SPLICE	YES	143	32	0.03	0.11	0.0469	0.0156	CUTA->chr6:33384219-33386094:-,cutA_divalent_cation_tolerance_homolog_(E._coli),S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	DM3_FIBROBLAST	0.03	0.11	0.0625	TRUE	0	0	0	1	0	FALSE	ACH-000742
DM3_FIBROBLAST	CCND1--DCBLD2	3	0	CCND1	1290	chr11:69456144:+	DCBLD2	12711	chr3:98620047:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	CYBA--DCN	3	0	CYBA	1193	chr16:88717368:-	DCN	23162	chr12:91552210:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	CYBA->chr16:88709691-88717560:-,cytochrome_b-245_alpha_chain,DCN->chr12:91539025-91576900:-,decorin	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	EEF2--AC002985.3	3	0	EEF2	9044	chr19:3977268:-	AC002985.3	16806	chr19:19023826:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,AC002985.3->chr19:19017822-19045206:-	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	FKBP2--ITGB1	3	0	FKBP2	3264	chr11:64010738:+	ITGB1	21815	chr10:33218934:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	FKBP2->FK506_binding_protein_2,chr11:64008475-64011604:+,ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	FLNA--RPRD1B	3	0	FLNA	16104	chrX:153582562:-	RPRD1B	35393	chr20:36718144:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	FLNA->chrX:153576892-153603006:-,filamin_A,RPRD1B->chr20:36661948-36720768:+,regulation_of_nuclear_pre-mRNA_domain_containing_1B	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	GNPTG--MAP1B	3	0	GNPTG	1384	chr16:1402307:+	MAP1B	14875	chr5:71479570:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0469	0	GNPTG->N-acetylglucosamine-1-phosphate_transferase_gamma_subunit,chr16:1401924-1413352:+,MAP1B->chr5:71403061-71505395:+,microtubule_associated_protein_1B	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	GRHPR--MAP7D1	3	0	GRHPR	2286	chr9:37424959:+	MAP7D1	27952	chr1:36645959:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	GRHPR->chr9:37422663-37436987:+,glyoxylate_reductase/hydroxypyruvate_reductase,MAP7D1->MAP7_domain_containing_1,chr1:36621180-36646450:+	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	MANF--TUBA1B	3	0	MANF	4894	chr3:51426397:+	TUBA1B	11706	chr12:49521800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	MANF->Oncogene{Bushman},chr3:51422478-51426828:+,mesencephalic_astrocyte_derived_neurotrophic_factor,TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	MT-ATP6--MT-CO2	3	0	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DM3_FIBROBLAST	1	1	0.0469	FALSE	59	21	0	114	0	FALSE	ACH-000742
DM3_FIBROBLAST	MT-ND4L--MT-RNR2	3	0	MT-ND4L	1161	chrM:10630:+	MT-RNR2	4326	chrM:1699:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	LOCAL_REARRANGEMENT:+:[7241],MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DM3_FIBROBLAST	1	1	0.0469	FALSE	17	32	5	7	0	FALSE	ACH-000742
DM3_FIBROBLAST	PLD3--CTSB	3	0	PLD3	8650	chr19:40877770:+	CTSB	27357	chr8:11710946:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	PLD3->chr19:40854363-40886346:+,phospholipase_D_family_member_3,CTSB->Oncogene{Bushman},cathepsin_B,chr8:11700033-11726957:-	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	RP11-1035H13.3--HELZ2	3	0	RP11-1035H13.3	6122	chr16:18800301:-	HELZ2	26130	chr20:62189501:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	RP11-1035H13.3->chr16:18799385-18812841:-,HELZ2->chr20:62189439-62205592:-,helicase_with_zinc_finger_2	DM3_FIBROBLAST	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	TAGLN--MT-ATP8	3	0	TAGLN	6105	chr11:117075141:+	MT-ATP8	9569	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	TAGLN->Oncogene{Bushman},chr11:117070037-117075498:+,transgelin,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DM3_FIBROBLAST	1	1	0.0469	FALSE	7	0	0	1	0	FALSE	ACH-000742
DM3_FIBROBLAST	AASS--CPED1	2	0	AASS	1120	chr7:121784215:-	CPED1	40349	chr7:120764385:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	AASS->aminoadipate-semialdehyde_synthase,chr7:121715701-121784334:-,CPED1->cadherin_like_and_PC-esterase_domain_containing_1,chr7:120628731-120937498:+	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	ADD1--CMAS	2	0	ADD1	1168	chr4:2845751:+	CMAS	34377	chr12:22208083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	ADD1->adducin_1,chr4:2845584-2931803:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	ATP6V1H--ME1	2	0	ATP6V1H	5524	chr8:54745544:-	ME1	38442	chr6:83926315:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-,ME1->chr6:83920108-84140797:-,malic_enzyme_1	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	CEP57L1--CDC40	2	0	CEP57L1	8203	chr6:109461878:+	CDC40	31487	chr6:110531910:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	CEP57L1->centrosomal_protein_57_like_1,chr6:109416313-109485135:+,CDC40->cell_division_cycle_40,chr6:110501344-110575478:+	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	DROSHA--NNT	2	0	DROSHA	18692	chr5:31483661:-	NNT	66673	chr5:43675613:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	DROSHA->chr5:31400604-31532303:-,drosha_ribonuclease_III,NNT->chr5:43602794-43707507:+,nicotinamide_nucleotide_transhydrogenase	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	FGFR1--TAF12	2	0	FGFR1	16478	chr8:38282027:-	TAF12	34758	chr1:28948677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	FGFR1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr8:38268656-38326352:-,fibroblast_growth_factor_receptor_1,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	GPALPP1--SPAG9	2	0	GPALPP1	1191	chr13:45563877:+	SPAG9	52752	chr17:49054582:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	GPALPP1->GPALPP_motifs_containing_1,chr13:45563687-45607746:+,SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	LPIN2--MYL12B	2	0	LPIN2	1229	chr18:3013085:-	MYL12B	32733	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	LPIN2->chr18:2916992-3013313:-,lipin_2,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	1	0	4	0	TRUE	ACH-000742
DM3_FIBROBLAST	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DM3_FIBROBLAST	1	1	0.0312	FALSE	292	1546	117	613	0	FALSE	ACH-000742
DM3_FIBROBLAST	RP11-392P7.6--EMP1	2	0	RP11-392P7.6	1078	chr12:13080737:+	EMP1	19999	chr12:13364403:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	RP11-392P7.6->chr12:13080660-13137579:+,EMP1->Oncogene{Bushman},chr12:13349650-13369708:+,epithelial_membrane_protein_1	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	SEC24D--THOC2	2	0	SEC24D	11872	chr4:119718838:-	THOC2	70988	chrX:122753287:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	SEC24D->SEC24_homolog_D,_COPII_coat_complex_component,chr4:119643978-119759838:-,THOC2->THO_complex_2,chrX:122734412-122866906:-	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	TACC1--ATP6V1H	2	0	TACC1	16198	chr8:38684893:+	ATP6V1H	55325	chr8:54628584:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1,ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
DM3_FIBROBLAST	ZNF736--PHF14	2	0	ZNF736	6637	chr7:63774531:+	PHF14	45146	chr7:11209043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	DM3_FIBROBLAST	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000742
HEKTE_KIDNEY	TIMM23B--LINC00843	59	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7165	0.2793	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HEKTE_KIDNEY	0.99	1	0.9958	TRUE	508	994	45	981	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-TA--MT-TC	35	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.425	0.0364	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEKTE_KIDNEY	1	1	0.4614	FALSE	462	80	0	856	0	FALSE	ACH-000049
HEKTE_KIDNEY	ZNF654--HMGB2	27	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3279	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HEKTE_KIDNEY	1	1	0.3279	TRUE	0	0	0	518	0	FALSE	ACH-000049
HEKTE_KIDNEY	PLXDC1--TAF13	23	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2793	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HEKTE_KIDNEY	1	1	0.2793	TRUE	7	10	0	216	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ATP6--MT-CO1	22	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	14344	35564	0	0	0.2672	0.0121	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEKTE_KIDNEY	0	0	0.2793	FALSE	183	104	9	328	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ATP6--MT-CO1	19	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	14703	36495	0	0	0.2307	0.0121	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEKTE_KIDNEY	0	0	0.2428	FALSE	183	104	9	328	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ND6--MT-TE	15	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1822	0.0729	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEKTE_KIDNEY	0.95	1	0.2551	FALSE	499	1288	110	792	0	FALSE	ACH-000049
HEKTE_KIDNEY	C15orf57--CBX3	14	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	76	56	0.22	0.27	0.17	0.085	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEKTE_KIDNEY	0.22	0.27	0.255	TRUE	267	562	48	632	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ATP6--MT-RNR2	13	3	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	16016	13796	0	0	0.1579	0.0364	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEKTE_KIDNEY	0	0	0.1943	FALSE	63	17	1	58	0	FALSE	ACH-000049
HEKTE_KIDNEY	RP11-123O10.4--GRIP1	13	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1579	0.0243	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HEKTE_KIDNEY	1	1	0.1822	FALSE	416	2512	207	587	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ND6--MT-TE	11	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	30	0	0.38	1	0.1336	0.085	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEKTE_KIDNEY	0.38	1	0.2186	FALSE	499	1288	110	792	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ATP6--MT-RNR2	10	6	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	16738	0	0	1	0.1214	0.0729	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEKTE_KIDNEY	0	1	0.1943	FALSE	63	17	1	58	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ATP6--MT-RNR2	10	2	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	NO	14073	0	0	1	0.1214	0.0243	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEKTE_KIDNEY	0	1	0.1457	FALSE	63	17	1	58	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ND6--MT-TE	9	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1093	0.0729	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEKTE_KIDNEY	0.94	1	0.1822	FALSE	499	1288	110	792	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ATP6--MT-RNR2	9	4	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	14683	0	0	1	0.1093	0.0486	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEKTE_KIDNEY	0	1	0.1579	FALSE	63	17	1	58	0	FALSE	ACH-000049
HEKTE_KIDNEY	C15orf57--CBX3	8	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	74	57	0.15	0.19	0.0971	0.0607	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEKTE_KIDNEY	0.15	0.19	0.1578	TRUE	267	562	48	632	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ND5--MT-ND6	4	20	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0.2429	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HEKTE_KIDNEY	1	1	0.2915	FALSE	26	124	4	93	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ND5--MT-ND6	6	12	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	2	5033	0.9	0	0.0729	0.1457	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HEKTE_KIDNEY	0	0.9	0.2186	FALSE	26	124	4	93	0	FALSE	ACH-000049
HEKTE_KIDNEY	COL1A1--NPM1	7	5	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	2835	3	0	0.8	0.085	0.0607	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HEKTE_KIDNEY	0	0.8	0.1457	TRUE	0	0	0	31	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ATP6--MT-RNR2	7	3	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	16738	14258	0	0	0.085	0.0364	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEKTE_KIDNEY	0	0	0.1214	FALSE	63	17	1	58	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ND6--MT-TE	3	19	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	29	0	0.43	1	0.0364	0.2307	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEKTE_KIDNEY	0.43	1	0.2671	FALSE	499	1288	110	792	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ATP6--MT-RNR2	7	2	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	12626	0	0	1	0.085	0.0243	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEKTE_KIDNEY	0	1	0.1093	FALSE	63	17	1	58	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ATP6--MT-RNR2	3	13	MT-ATP6	1620	chrM:9146:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.1579	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEKTE_KIDNEY	1	1	0.1943	FALSE	63	17	1	58	0	FALSE	ACH-000049
HEKTE_KIDNEY	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0729	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEKTE_KIDNEY	1	1	0.0729	FALSE	292	1546	117	613	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	15950	13847	0	0	0.0607	0.0121	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEKTE_KIDNEY	0	0	0.0728	FALSE	63	17	1	58	0	FALSE	ACH-000049
HEKTE_KIDNEY	CTD-2337A12.1--CAST	4	4	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	71	1	0.1	0.0486	0.0486	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HEKTE_KIDNEY	0.1	1	0.0972	TRUE	347	1186	183	220	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ATP6--MT-ND2	5	0	MT-ATP6	1098	chrM:8624:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HEKTE_KIDNEY	1	1	0.0607	FALSE	177	96	13	17	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEKTE_KIDNEY	1	1	0.0607	FALSE	63	17	1	58	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-TA--MT-TC	5	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEKTE_KIDNEY	1	1	0.0607	FALSE	462	80	0	856	0	FALSE	ACH-000049
HEKTE_KIDNEY	CNN2--PPP1R12C	4	0	CNN2	4331	chr19:1032695:+	PPP1R12C	21239	chr19:55607703:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0	GTEx&tcga_normals:21/3694=0.57%,GTEx:0.19%,GTEx_FI:{Blood_Vessel=[count:54=pct:14.6],Esophagus=[count:40=pct:9.9],Colon=[count:27=pct:14.1],Stomach=[count:6=pct:6.7],Skin=[count:4=pct:1.3],Breast=[count:4=pct:3.6],Prostate=[count:3=pct:4.9],Spleen=[count:3=pct:2.7],Small_Intestine=[count:2=pct:3.6],Fallopian_Tube=[count:1=pct:16.7],Thyroid=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},GTEx_v2:{count=203;pct=2.35%;dist=Esophagus_-_Muscularis=42,Artery_-_Tibial=39,Colon_-_Sigmoid=21,Esophagus_-_Gastroesophageal_Junction=17,Artery_-_Aorta=13,Artery_-_Coronary=12,Colon_-_Transverse=9,Cells_-_Transformed_fibroblasts=7,Stomach=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Adipose_-_Subcutaneous=6,Breast_-_Mammary_Tissue=4,Nerve_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=2,Thyroid=2,Uterus=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Ovary=1,Pancreas=1,Lung=1,Vagina=1,Prostate=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Spleen=1,Bladder=1},CNN2->calponin_2,chr19:1026298-1039068:+,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	HEKTE_KIDNEY	1	1	0.0486	TRUE	98	3	5	3	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ATP6--MT-RNR2	3	4	MT-ATP6	1139	chrM:8665:+	MT-RNR2	4749	chrM:1738:+	INCL_NON_REF_SPLICE	YES	15609	0	0	1	0.0364	0.0486	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEKTE_KIDNEY	0	1	0.085	FALSE	63	17	1	58	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ND6--MT-TE	3	4	MT-ND6	1198	chrM:14476:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	32	0	0.18	1	0.0364	0.0486	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEKTE_KIDNEY	0.18	1	0.085	FALSE	499	1288	110	792	0	FALSE	ACH-000049
HEKTE_KIDNEY	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	HEKTE_KIDNEY	1	1	0.0486	TRUE	22	156	2	142	0	FALSE	ACH-000049
HEKTE_KIDNEY	SLC1A5--MT-ND4L	4	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEKTE_KIDNEY	1	1	0.0486	FALSE	0	0	0	189	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.0364	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEKTE_KIDNEY	1	1	0.0728	FALSE	462	80	0	856	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	14767	14153	0	0	0.0364	0.0121	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEKTE_KIDNEY	0	0	0.0485	FALSE	63	17	1	58	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1132	chrM:8658:+	MT-RNR2	5436	chrM:2425:+	INCL_NON_REF_SPLICE	YES	14683	14750	0	0	0.0364	0.0121	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEKTE_KIDNEY	0	0	0.0485	FALSE	63	17	1	58	0	FALSE	ACH-000049
HEKTE_KIDNEY	RP4-565E6.1--HYDIN	2	5	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0.0607	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HEKTE_KIDNEY	1	1	0.085	TRUE	456	1387	91	133	0	FALSE	ACH-000049
HEKTE_KIDNEY	CFL1--FIBP	3	0	CFL1	4089	chr11:65625568:-	FIBP	16353	chr11:65655603:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:-:[21715],CFL1->chr11:65590493-65629497:-,cofilin_1,FIBP->FGF1_intracellular_binding_protein,chr11:65651212-65656010:-	HEKTE_KIDNEY	1	1	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000049
HEKTE_KIDNEY	MT-ATP6--MT-ND2	3	0	MT-ATP6	1130	chrM:8656:+	MT-ND2	5517	chrM:5305:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HEKTE_KIDNEY	1	1	0.0364	FALSE	177	96	13	17	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5387	chrM:2376:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEKTE_KIDNEY	1	1	0.0364	FALSE	63	17	1	58	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEKTE_KIDNEY	1	1	0.0364	FALSE	462	80	0	856	0	FALSE	ACH-000049
HEKTE_KIDNEY	MT-TA--MT-TY	3	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HEKTE_KIDNEY	1	1	0.0364	FALSE	13	214	14	42	0	FALSE	ACH-000049
HEKTE_KIDNEY	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HEKTE_KIDNEY	1	1	0.0364	TRUE	0	0	0	434	0	FALSE	ACH-000049
HEKTE_KIDNEY	NRIP1--AF127936.7	3	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEKTE_KIDNEY	1	1	0.0364	FALSE	164	806	69	479	0	FALSE	ACH-000049
HEKTE_KIDNEY	TAGLN2--MT-ATP8	3	0	TAGLN2	6231	chr1:159888394:-	MT-ATP8	9799	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	TAGLN2->chr1:159887897-159895522:-,transgelin_2,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEKTE_KIDNEY	1	1	0.0364	FALSE	1	0	0	2	0	FALSE	ACH-000049
HEKTE_KIDNEY	WTAPP1--RUVBL1	3	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	HEKTE_KIDNEY	1	1	0.0364	TRUE	9	252	6	66	0	FALSE	ACH-000049
HEKTE_KIDNEY	F2R--IQGAP2	1	6	F2R	1353	chr5:76012220:+	IQGAP2	32433	chr5:75932859:+	ONLY_REF_SPLICE	NO	240	0	0.03	1	0.0121	0.0729	LOCAL_REARRANGEMENT:+:[7911],F2R->chr5:76011868-76031606:+,coagulation_factor_II_thrombin_receptor,IQGAP2->IQ_motif_containing_GTPase_activating_protein_2,chr5:75699074-76003957:+	HEKTE_KIDNEY	0.03	1	0.085	TRUE	0	0	0	1	0	FALSE	ACH-000049
HEKTE_KIDNEY	F2R--IQGAP2	1	5	F2R	1353	chr5:76012220:+	IQGAP2	37635	chr5:75954284:+	ONLY_REF_SPLICE	NO	240	38	0.02	0.14	0.0121	0.0607	LOCAL_REARRANGEMENT:+:[7911],F2R->chr5:76011868-76031606:+,coagulation_factor_II_thrombin_receptor,IQGAP2->IQ_motif_containing_GTPase_activating_protein_2,chr5:75699074-76003957:+	HEKTE_KIDNEY	0.02	0.14	0.0728	TRUE	0	0	0	1	0	FALSE	ACH-000049
HEKTE_KIDNEY	B3GALNT2--C6orf118	2	0	B3GALNT2	10579	chr1:235628953:-	C6orf118	23755	chr6:165715785:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	B3GALNT2->beta-1,3-N-acetylgalactosaminyltransferase_2,chr1:235613238-235667781:-,C6orf118->chr6:165693153-165723096:-,chromosome_6_open_reading_frame_118	HEKTE_KIDNEY	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000049
HEKTE_KIDNEY	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEKTE_KIDNEY	1	1	0.0243	FALSE	125	705	46	456	0	FALSE	ACH-000049
HEKTE_KIDNEY	RBM5--MOB1A	2	0	RBM5	5377	chr3:50131308:+	MOB1A	30250	chr2:74399879:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+,MOB1A->MOB_kinase_activator_1A,chr2:74379655-74406025:-	HEKTE_KIDNEY	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000049
HEKTE_KIDNEY	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HEKTE_KIDNEY	1	1	0.0243	TRUE	6	15	3	35	0	FALSE	ACH-000049
HEKTE_KIDNEY	POSTN--TRPC4	1	3	POSTN	18733	chr13:38143437:-	TRPC4	38332	chr13:38211762:-	ONLY_REF_SPLICE	NO	4	85	0.5	0.04	0.0121	0.0364	LOCAL_REARRANGEMENT:-:[37792],POSTN->chr13:38136720-38172981:-,periostin,TRPC4->chr13:38210773-38444562:-,transient_receptor_potential_cation_channel_subfamily_C_member_4	HEKTE_KIDNEY	0.04	0.5	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000049
HEKTE_KIDNEY	SFI1--SEPP1	1	3	SFI1	4292	chr22:31904362:+	SEPP1	47418	chr5:42808468:-	ONLY_REF_SPLICE	NO	47	0	0.08	1	0.0121	0.0364	SFI1->SFI1_centrin_binding_protein,chr22:31884674-32014572:+,SEPP1->chr5:42799982-42887494:-,selenoprotein_P,_plasma,_1	HEKTE_KIDNEY	0.08	1	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000049
HEKTE_KIDNEY	F2R--IQGAP2	1	2	F2R	1353	chr5:76012220:+	IQGAP2	44709	chr5:75970302:+	ONLY_REF_SPLICE	YES	240	132	0.01	0.02	0.0121	0.0243	LOCAL_REARRANGEMENT:+:[7911],F2R->chr5:76011868-76031606:+,coagulation_factor_II_thrombin_receptor,IQGAP2->IQ_motif_containing_GTPase_activating_protein_2,chr5:75699074-76003957:+	HEKTE_KIDNEY	0.01	0.02	0.0364	FALSE	0	0	0	1	0	FALSE	ACH-000049
HEKTE_KIDNEY	F2R--IQGAP2	1	2	F2R	1353	chr5:76012220:+	IQGAP2	44184	chr5:75969777:+	ONLY_REF_SPLICE	YES	240	142	0.01	0.02	0.0121	0.0243	LOCAL_REARRANGEMENT:+:[7911],F2R->chr5:76011868-76031606:+,coagulation_factor_II_thrombin_receptor,IQGAP2->IQ_motif_containing_GTPase_activating_protein_2,chr5:75699074-76003957:+	HEKTE_KIDNEY	0.01	0.02	0.0364	FALSE	0	0	0	1	0	FALSE	ACH-000049
HEKTE_KIDNEY	F2R--IQGAP2	1	2	F2R	1353	chr5:76012220:+	IQGAP2	42456	chr5:75967584:+	ONLY_REF_SPLICE	YES	240	43	0.01	0.07	0.0121	0.0243	LOCAL_REARRANGEMENT:+:[7911],F2R->chr5:76011868-76031606:+,coagulation_factor_II_thrombin_receptor,IQGAP2->IQ_motif_containing_GTPase_activating_protein_2,chr5:75699074-76003957:+	HEKTE_KIDNEY	0.01	0.07	0.0364	FALSE	0	0	0	1	0	FALSE	ACH-000049
HEKTE_KIDNEY	POSTN--TRPC4	1	2	POSTN	18289	chr13:38143881:-	TRPC4	38332	chr13:38211762:-	ONLY_REF_SPLICE	YES	3	85	0.5	0.03	0.0121	0.0243	LOCAL_REARRANGEMENT:-:[37792],POSTN->chr13:38136720-38172981:-,periostin,TRPC4->chr13:38210773-38444562:-,transient_receptor_potential_cation_channel_subfamily_C_member_4	HEKTE_KIDNEY	0.03	0.5	0.0364	TRUE	0	0	0	1	0	FALSE	ACH-000049
HEKTE_KIDNEY	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	13	1	0.19	0.0121	0.0243	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEKTE_KIDNEY	0.19	1	0.0364	TRUE	458	1351	185	561	0	FALSE	ACH-000049
HEKTE_KIDNEY	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	42	1	0.07	0.0121	0.0243	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEKTE_KIDNEY	0.07	1	0.0364	TRUE	465	1949	224	605	0	FALSE	ACH-000049
HEKTE_KIDNEY	CPSF6--C9orf3	1	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	217	126	0.01	0.02	0.0121	0.0121	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	HEKTE_KIDNEY	0.01	0.02	0.0242	FALSE	53	99	2	44	0	FALSE	ACH-000049
HEKTE_KIDNEY	CYBRD1--HMGB1	1	1	CYBRD1	1492	chr2:172379248:+	HMGB1	19712	chr13:31037831:-	ONLY_REF_SPLICE	YES	290	1178	0.01	0	0.0121	0.0121	CYBRD1->chr2:172378757-172414643:+,cytochrome_b_reductase_1,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	HEKTE_KIDNEY	0	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000049
HEKTE_KIDNEY	F2R--IQGAP2	1	1	F2R	1353	chr5:76012220:+	IQGAP2	49134	chr5:75989180:+	ONLY_REF_SPLICE	YES	240	23	0.01	0.08	0.0121	0.0121	LOCAL_REARRANGEMENT:+:[7911],F2R->chr5:76011868-76031606:+,coagulation_factor_II_thrombin_receptor,IQGAP2->IQ_motif_containing_GTPase_activating_protein_2,chr5:75699074-76003957:+	HEKTE_KIDNEY	0.01	0.08	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000049
HEKTE_KIDNEY	OGT--PRKCA	1	1	OGT	6255	chrX:70764485:+	PRKCA	51575	chr17:64799991:+	ONLY_REF_SPLICE	YES	162	75	0.01	0.03	0.0121	0.0121	OGT->O-linked_N-acetylglucosamine_(GlcNAc)_transferase,chrX:70752933-70795747:+,PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha	HEKTE_KIDNEY	0.01	0.03	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000049
HEKTE_KIDNEY	PLXNB3--FAM50A	1	1	PLXNB3	2219	chrX:153031035:+	FAM50A	21276	chrX:153674763:+	ONLY_REF_SPLICE	YES	3	364	0.4	0.01	0.0121	0.0121	PLXNB3->chrX:153029651-153044801:+,plexin_B3,FAM50A->chrX:153672473-153679002:+,family_with_sequence_similarity_50_member_A	HEKTE_KIDNEY	0.01	0.4	0.0242	FALSE	0	0	0	2	0	FALSE	ACH-000049
HEKTE_KIDNEY	RP11-120D5.1--MID1	1	1	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	88	0.67	0.02	0.0121	0.0121	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEKTE_KIDNEY	0.02	0.67	0.0242	FALSE	2	31	0	60	0	FALSE	ACH-000049
HEKTE_KIDNEY	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	88	0.33	0.02	0.0121	0.0121	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEKTE_KIDNEY	0.02	0.33	0.0242	FALSE	16	356	14	466	0	FALSE	ACH-000049
HEKTE_KIDNEY	RP5-1119A7.14--RBFOX2	1	1	RP5-1119A7.14	1162	chr22:36850830:-	RBFOX2	7663	chr22:36334945:-	ONLY_REF_SPLICE	NO	0	19	1	0.1	0.0121	0.0121	RP5-1119A7.14->chr22:36841445-36850991:-,RBFOX2->RNA_binding_protein,_fox-1_homolog_2,chr22:36134783-36424473:-	HEKTE_KIDNEY	0.1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000049
HEKTE_KIDNEY	UBAP1--PTBP1	1	1	UBAP1	1236	chr9:34179238:+	PTBP1	24390	chr19:810543:+	ONLY_REF_SPLICE	NO	222	885	0.01	0	0.0121	0.0121	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	HEKTE_KIDNEY	0	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000049
HEKTE_KIDNEY	XRCC5--NT5C3A	1	1	XRCC5	20768	chr2:217026771:+	NT5C3A	32846	chr7:33075600:-	ONLY_REF_SPLICE	YES	1329	108	0	0.02	0.0121	0.0121	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,NT5C3A->5'-nucleotidase,_cytosolic_IIIA,chr7:33053742-33102409:-	HEKTE_KIDNEY	0	0.02	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000049
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	69	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7022	0.1018	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.804	FALSE	462	80	0	856	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	48	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4885	0.1628	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6513	TRUE	508	994	45	981	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	43	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4376	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4376	TRUE	0	0	0	518	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	33	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	508	12	0.06	0.74	0.3358	0.0102	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.74	0.346	TRUE	519	3926	326	965	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	18	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.1832	0.1119	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.2951	FALSE	499	1288	110	792	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	18	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1832	0.0305	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2137	FALSE	499	1288	110	792	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	16	11	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1628	0.1119	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2747	FALSE	462	80	0	856	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	56	MT-CO3	1550	chrM:9756:+	MT-ATP6	4730	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5	0	0.92	1	0.0305	0.5699	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.6004	FALSE	189	492	56	216	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	16	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	6070	0	0	1	0.1628	0.0102	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.173	FALSE	13	9	0	364	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	9	22	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	NO	1	10	0.97	0.76	0.0916	0.2239	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.97	0.3155	FALSE	189	492	56	216	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	11	12	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	3	5318	0.88	0	0.1119	0.1221	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.88	0.234	FALSE	26	124	4	93	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	13	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15837	0	0	1	0.1323	0.0102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1425	FALSE	230	193	14	283	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	38	MT-CO3	1522	chrM:9728:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	5	43	0.89	0.49	0.0305	0.3867	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.89	0.4172	FALSE	189	492	56	216	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	30	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	6	21	0.85	0.62	0.0509	0.3053	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.85	0.3562	FALSE	189	492	56	216	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	32	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	10	21	0.78	0.63	0.0407	0.3257	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.78	0.3664	FALSE	189	492	56	216	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	8	11	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	6	0	0.76	1	0.0814	0.1119	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.1933	FALSE	189	492	56	216	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	7	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0916	0.0712	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1628	FALSE	499	1288	110	792	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AFF1--KMT2A	8	9	AFF1	11101	chr4:88005316:+	KMT2A	51810	chr11:118354898:+	ONLY_REF_SPLICE	YES	37	2	0.31	0.89	0.0814	0.0916	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.89	0.173	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	12	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0712	0.1221	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1933	FALSE	462	80	0	856	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	8	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	3	0.94	0.83	0.0814	0.0712	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.94	0.1526	FALSE	515	4851	409	746	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	7	10	KMT2A	16644	chr11:118353210:+	AFF1	63588	chr4:88011136:+	ONLY_REF_SPLICE	YES	2	40	0.89	0.3	0.0712	0.1018	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.89	0.173	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	8	5	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	7	0	0.65	1	0.0814	0.0509	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	0.1323	FALSE	189	492	56	216	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	9	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19315	0	0	1	0.0916	0.0102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1018	FALSE	231	205	14	283	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	24	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	17	0.96	0.61	0.0305	0.2442	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.96	0.2747	FALSE	189	492	56	216	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	9	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0916	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0916	FALSE	231	204	14	283	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0814	0.0407	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1221	FALSE	499	1288	110	792	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	7	7	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	106	0	0.12	1	0.0712	0.0712	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.1424	FALSE	114	26	4	85	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	7	7	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	102	0	0.12	1	0.0712	0.0712	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.1424	FALSE	114	26	4	85	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	11	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.85	1	0.0611	0.1119	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.173	FALSE	499	1288	110	792	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	8	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	309	39407	0.03	0	0.0814	0.0204	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.1018	FALSE	183	104	9	328	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	4	16	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0.1628	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2035	FALSE	26	124	4	93	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	7	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	6033	0	0	1	0.0712	0.0102	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0814	FALSE	13	9	0	364	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	6	4	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	249	11	0.04	0.48	0.0611	0.0407	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.48	0.1018	FALSE	59	21	0	114	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	139	25	0.1	0.38	0.0407	0.1119	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.38	0.1526	TRUE	267	562	48	632	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	5	7	MT-ND1	1246	chrM:3552:+	MT-RNR2	5019	chrM:1733:+	INCL_NON_REF_SPLICE	YES	76	0	0.14	1	0.0509	0.0712	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.1221	FALSE	114	26	4	85	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	6	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	25603	0	0	1	0.0509	0.0611	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.112	FALSE	231	217	16	283	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	10	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	25322	90	0	0.13	0.0407	0.1018	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.13	0.1425	FALSE	231	217	16	283	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	10	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	25704	0	0	1	0.0407	0.1018	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1425	FALSE	231	217	16	283	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	9	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	6	0	0.68	1	0.0407	0.0916	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	1	0.1323	FALSE	189	492	56	216	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	4	9	MT-ND1	1297	chrM:3603:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	168	0	0.07	1	0.0407	0.0916	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.1323	FALSE	114	26	4	85	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGDIB--RPS19	5	4	ARHGDIB	9470	chr12:15095446:-	RPS19	13303	chr19:42364325:+	INCL_NON_REF_SPLICE	YES	5375	20	0	0.31	0.0509	0.0407	ARHGDIB->Rho_GDP_dissociation_inhibitor_beta,chr12:15094951-15114662:-,RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.31	0.0916	FALSE	0	0	0	1	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	132	26	0.08	0.32	0.0407	0.0814	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.32	0.1221	TRUE	267	562	48	632	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-RNR2	5	4	MT-CO2	1240	chrM:7825:+	MT-RNR2	4704	chrM:1690:+	INCL_NON_REF_SPLICE	YES	89	0	0.09	1	0.0509	0.0407	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.0916	FALSE	24	6	1	8	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	12	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3394	0	0	1	0.0305	0.1221	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1526	FALSE	216	209	16	281	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	7	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	359	0	0.03	1	0.0407	0.0712	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.1119	FALSE	182	97	9	327	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	333	40417	0.02	0	0.0509	0.0305	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0814	FALSE	183	104	9	328	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	5	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	250	12	0.03	0.4	0.0509	0.0305	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.4	0.0814	FALSE	59	21	0	114	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	11	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.78	1	0.0305	0.1119	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.1424	FALSE	499	1288	110	792	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	5	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	380	39990	0.02	0	0.0407	0.0509	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0916	FALSE	183	104	9	328	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16017	0	0	1	0.0509	0.0102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0611	FALSE	230	198	14	283	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PABPC1--MTND2P28	5	0	PABPC1	8207	chr8:101721756:-	MTND2P28	18371	chr1:565033:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0509	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0509	FALSE	0	0	0	189	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	7	MT-ND1	1272	chrM:3578:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	YES	118	0	0.08	1	0.0305	0.0712	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.1017	FALSE	114	26	4	85	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ND4L	4	2	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2491	0	0	1	0.0407	0.0204	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0611	FALSE	1	1	0	107	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-RNR2	3	6	MT-CO2	1320	chrM:7905:+	MT-RNR2	5267	chrM:2253:+	INCL_NON_REF_SPLICE	YES	42	17935	0.18	0	0.0305	0.0611	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.18	0.0916	FALSE	24	6	1	8	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	6	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	100	17732	0.08	0	0.0305	0.0611	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.0916	FALSE	120	26	5	87	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1082	chrM:8608:+	MT-CO1	5379	chrM:6601:+	INCL_NON_REF_SPLICE	YES	283	40655	0.02	0	0.0407	0.0102	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0509	FALSE	183	104	9	328	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-ND2	3	5	MT-CO1	1688	chrM:6591:+	MT-ND2	5967	chrM:4894:+	INCL_NON_REF_SPLICE	YES	41175	20361	0	0	0.0305	0.0509	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0814	FALSE	55	19	1	13	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15837	0	0	1	0.0407	0.0102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0509	FALSE	230	193	14	283	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0.0102	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0509	FALSE	462	80	0	856	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ENO1--EEF2	4	0	ENO1	11548	chr1:8923321:-	EEF2	24932	chr19:3976731:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0407	TRUE	0	0	0	9	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0407	FALSE	189	492	56	216	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	334	39990	0.01	0	0.0305	0.0204	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0509	FALSE	183	104	9	328	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	2	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	21	1	0.19	0.0305	0.0204	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.0509	FALSE	189	492	56	216	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	2	MT-ND4	1294	chrM:11053:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	20833	0	0	1	0.0305	0.0204	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0509	FALSE	231	205	14	283	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	2	5	KMT2A	16241	chr11:118352807:+	AFF1	63588	chr4:88011136:+	ONLY_REF_SPLICE	YES	3	40	0.7	0.15	0.0204	0.0509	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.7	0.0713	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	3	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	238	11	0.02	0.27	0.0305	0.0102	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.27	0.0407	FALSE	59	21	0	114	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	16488	0	0	1	0.0305	0.0102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0407	FALSE	231	204	14	283	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR2--DHX34	3	0	GLTSCR2	1262	chr19:48249040:+	DHX34	29491	chr19:47885237:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:2=pct:3.8],Breast=[count:2=pct:1.8],Cervix_Uteri=[count:1=pct:12.5],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=4;pct=0.05%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hippocampus=1,Whole_Blood=1,Spleen=1},GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0305	TRUE	14	43	2	13	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ILF3--RPLP1	3	0	ILF3	11721	chr19:10793354:+	RPLP1	24497	chr15:69745159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1017	chrM:10776:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0305	FALSE	230	190	14	283	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0305	FALSE	231	205	14	283	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFC2--ESYT2	3	0	RFC2	4007	chr7:73664069:-	ESYT2	34390	chr7:158540971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	RFC2->chr7:73645829-73668774:-,replication_factor_C_subunit_2,ESYT2->chr7:158523686-158622944:-,extended_synaptotagmin_protein_2	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0102	0.0814	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.0916	FALSE	192	492	57	212	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARL14EP--ZFAT	2	0	ARL14EP	1152	chr11:30344749:+	ZFAT	18482	chr8:135649955:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ARL14EP->ADP_ribosylation_factor_like_GTPase_14_effector_protein,chr11:30344598-30359774:+,ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP9B--RCAN1	2	0	ATP9B	5810	chr18:76856649:+	RCAN1	61840	chr21:35896008:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ATP9B->ATPase_phospholipid_transporting_9B_(putative),chr18:76829285-77138283:+,RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C9orf64--ATXN2L	2	0	C9orf64	2606	chr9:86570296:-	ATXN2L	22620	chr16:28848072:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	C9orf64->chr9:86553226-86571901:-,chromosome_9_open_reading_frame_64,ATXN2L->ataxin_2_like,chr16:28834356-28848558:+	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHFR--KNTC1	2	0	CHFR	2239	chr12:133522207:-	KNTC1	72755	chr12:123078823:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,KNTC1->chr12:123011793-123110943:+,kinetochore_associated_1	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPD--MKL1	2	0	HNRNPD	3442	chr4:83292681:-	MKL1	20653	chr22:40859290:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	HNRNPD->Oncogene{Bushman},chr4:83273651-83295656:-,heterogeneous_nuclear_ribonucleoprotein_D,MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTERFD3--UBXN4	2	0	MTERFD3	1198	chr12:107380747:-	UBXN4	16388	chr2:136519388:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MTERFD3->chr12:107371069-107380944:-,UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYLIP--PARP8	2	0	MYLIP	1285	chr6:16129640:+	PARP8	28296	chr5:50084357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MYLIP->chr6:16129356-16148479:+,myosin_regulatory_light_chain_interacting_protein,PARP8->chr5:49961733-50142356:+,poly(ADP-ribose)_polymerase_family_member_8	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	FALSE	292	1546	117	613	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--RHOA	2	0	RCC1	2175	chr1:28834672:+	RHOA	22152	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	1	0	6	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A53--MAPK9	2	0	SLC25A53	1150	chrX:103401559:-	MAPK9	15190	chr5:179707608:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	SLC25A53->chrX:103343898-103401708:-,solute_carrier_family_25_member_53,MAPK9->Oncogene{Bushman},chr5:179660143-179719099:-,mitogen-activated_protein_kinase_9	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--CHMP1A	1	2	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	321	417	0.01	0.01	0.0102	0.0204	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0306	FALSE	13	55	3	29	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADAP1--C7orf50	1	1	ADAP1	9672	chr7:959605:-	C7orf50	29696	chr7:1049779:-	ONLY_REF_SPLICE	YES	152	338	0.01	0.01	0.0102	0.0102	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_REARRANGEMENT:-:[41579],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0204	FALSE	0	6	0	10	1	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD10--ING1	1	1	ANKRD10	1345	chr13:111567072:-	ING1	22718	chr13:111371576:+	ONLY_REF_SPLICE	NO	141	114	0.01	0.02	0.0102	0.0102	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Colon=[count:1=pct:0.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1},ANKRD10->ankyrin_repeat_domain_10,chr13:111530887-111567416:-,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0204	FALSE	2	0	0	4	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPM--SRP9	1	1	HNRNPM	6438	chr19:8530246:+	SRP9	22620	chr1:225965637:+	ONLY_REF_SPLICE	YES	1520	86	0	0.02	0.0102	0.0102	HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR17HG--PHF14	1	1	MIR17HG	2213	chr13:92002024:+	PHF14	34008	chr7:11150977:+	ONLY_REF_SPLICE	YES	4	200	0.33	0.01	0.0102	0.0102	MIR17HG->chr13:92000074-92006833:+,miR-17-92a-1_cluster_host_gene,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.33	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAPOLA--VRK1	1	1	PAPOLA	2168	chr14:96968937:+	VRK1	34194	chr14:97299804:+	ONLY_REF_SPLICE	YES	110	10	0.02	0.17	0.0102	0.0102	PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,VRK1->Oncogene{Bushman},chr14:97263641-97398059:+,vaccinia_related_kinase_1	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.17	0.0204	TRUE	0	3	0	2	2	TRUE	ACH-000045
MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBB6--IRF8	1	1	TUBB6	3238	chr18:12311052:+	IRF8	24364	chr16:85952023:+	ONLY_REF_SPLICE	YES	473	1282	0	0	0.0102	0.0102	TUBB6->chr18:12307668-12344319:+,tubulin_beta_6_class_V,IRF8->chr16:85932409-85956215:+,interferon_regulatory_factor_8	MV411_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000045
BC3C_URINARY_TRACT	CNN2--AC004221.2	345	89	CNN2	4331	chr19:1032695:+	AC004221.2	12745	chr19:1239363:+	ONLY_REF_SPLICE	YES	331	1	0.57	1	4.3301	1.1171	CNN2->calponin_2,chr19:1026298-1039068:+,AC004221.2->chr19:1238178-1239521:+	BC3C_URINARY_TRACT	0.57	1	5.4472	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	TIMM23B--LINC00843	70	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8786	0.251	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BC3C_URINARY_TRACT	1	1	1.1296	TRUE	508	994	45	981	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	TIMM23--RP11-464F9.1	46	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	243	0	0.16	1	0.5774	0.0251	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BC3C_URINARY_TRACT	0.16	1	0.6025	TRUE	519	3926	326	965	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	UQCRC1--SLC26A6	27	7	UQCRC1	2815	chr3:48646595:-	SLC26A6	14391	chr3:48671068:-	ONLY_REF_SPLICE	YES	543	6	0.06	0.85	0.3389	0.0879	LOCAL_REARRANGEMENT:-:[14747],UQCRC1->chr3:48636435-48648409:-,ubiquinol-cytochrome_c_reductase_core_protein_I,SLC26A6->chr3:48663156-48672926:-,solute_carrier_family_26_member_6	BC3C_URINARY_TRACT	0.06	0.85	0.4268	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	CNN2--AC004221.2	9	71	CNN2	4300	chr19:1032664:+	AC004221.2	12745	chr19:1239363:+	INCL_NON_REF_SPLICE	YES	316	1	0.2	0.99	0.113	0.8911	CNN2->calponin_2,chr19:1026298-1039068:+,AC004221.2->chr19:1238178-1239521:+	BC3C_URINARY_TRACT	0.2	0.99	1.0041	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	CNN2--AC004221.2	8	71	CNN2	4298	chr19:1032662:+	AC004221.2	12745	chr19:1239363:+	ONLY_REF_SPLICE	YES	318	1	0.2	0.99	0.1004	0.8911	CNN2->calponin_2,chr19:1026298-1039068:+,AC004221.2->chr19:1238178-1239521:+	BC3C_URINARY_TRACT	0.2	0.99	0.9915	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	PLXDC1--TAF13	20	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.251	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	BC3C_URINARY_TRACT	1	1	0.251	TRUE	7	10	0	216	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	MT-TA--MT-TC	17	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2134	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BC3C_URINARY_TRACT	1	1	0.2134	FALSE	462	80	0	856	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	MT-ND6--MT-TE	15	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1883	0.0251	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BC3C_URINARY_TRACT	1	1	0.2134	FALSE	499	1288	110	792	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	FTH1--ACTB	12	6	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	9449	0	0	1	0.1506	0.0753	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	BC3C_URINARY_TRACT	0	1	0.2259	TRUE	1	0	0	97	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	NPM1P24--SET	13	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	37	1543	0.27	0.01	0.1632	0.0126	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BC3C_URINARY_TRACT	0.01	0.27	0.1758	TRUE	0	0	0	434	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	MT-ATP6--MT-CO1	11	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1381	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BC3C_URINARY_TRACT	1	1	0.1381	FALSE	183	104	9	328	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	KRT5--MT-CO3	10	2	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	5761	9914	0	0	0.1255	0.0251	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BC3C_URINARY_TRACT	0	0	0.1506	FALSE	0	0	0	18	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	HSP90AB1--MT-RNR2	10	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1255	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BC3C_URINARY_TRACT	1	1	0.1255	FALSE	13	9	0	364	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	C15orf57--CBX3	8	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	24	39	0.37	0.26	0.1004	0.0753	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BC3C_URINARY_TRACT	0.26	0.37	0.1757	TRUE	267	562	48	632	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1004	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BC3C_URINARY_TRACT	1	1	0.1004	FALSE	13	9	0	364	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	C15orf57--CBX3	6	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	24	39	0.33	0.24	0.0753	0.0753	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BC3C_URINARY_TRACT	0.24	0.33	0.1506	TRUE	267	562	48	632	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	FTH1--ACTB	6	6	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	9488	0	0	1	0.0753	0.0753	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	BC3C_URINARY_TRACT	0	1	0.1506	TRUE	1	0	0	97	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	FTH1--ACTB	6	6	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	10040	0	0	1	0.0753	0.0753	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	BC3C_URINARY_TRACT	0	1	0.1506	TRUE	1	0	0	97	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	ZDHHC14--RP11-80B9.1	6	2	ZDHHC14	2134	chr6:157803298:+	RP11-80B9.1	24405	chr1:240931452:+	ONLY_REF_SPLICE	YES	6	0	0.57	1	0.0753	0.0251	ZDHHC14->Oncogene{Bushman},chr6:157802165-158099178:+,zinc_finger_DHHC-type_containing_14,RP11-80B9.1->chr1:240928857-240931980:+	BC3C_URINARY_TRACT	0.57	1	0.1004	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	CALM3--MT-ATP8	6	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0753	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BC3C_URINARY_TRACT	1	1	0.0753	FALSE	12	0	0	26	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	FTH1--ACTB	5	4	FTH1	1181	chr11:61734952:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	6256	0	0	1	0.0628	0.0502	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	BC3C_URINARY_TRACT	0	1	0.113	TRUE	1	0	0	97	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	MT-ATP6--MT-CO1	6	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0753	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BC3C_URINARY_TRACT	1	1	0.0753	FALSE	183	104	9	328	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0753	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BC3C_URINARY_TRACT	1	1	0.0753	FALSE	499	1288	110	792	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	MT-ND6--MT-TE	4	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	13	0	0.46	1	0.0502	0.0879	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BC3C_URINARY_TRACT	0.46	1	0.1381	FALSE	499	1288	110	792	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	FTH1--ACTB	4	6	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	8250	0	0	1	0.0502	0.0753	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	BC3C_URINARY_TRACT	0	1	0.1255	TRUE	1	0	0	97	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	LRRC8A--RP11-706D8.3	5	1	LRRC8A	3925	chr9:131648400:+	RP11-706D8.3	15227	chr3:177056312:-	ONLY_REF_SPLICE	YES	350	0	0.02	1	0.0628	0.0126	LRRC8A->chr9:131644391-131680318:+,leucine-rich_repeat_containing_8_family_member_A,RP11-706D8.3->chr3:177055416-177066954:-	BC3C_URINARY_TRACT	0.02	1	0.0754	TRUE	0	0	0	1	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	MT-ATP6--MT-CO1	5	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10493	17503	0	0	0.0628	0.0126	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BC3C_URINARY_TRACT	0	0	0.0754	FALSE	183	104	9	328	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0628	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BC3C_URINARY_TRACT	1	1	0.0628	TRUE	465	1949	224	605	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	SLC7A5--RPL39	5	0	SLC7A5	8058	chr16:87871484:-	RPL39	17596	chrX:118925591:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0628	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	BC3C_URINARY_TRACT	1	1	0.0628	TRUE	0	0	0	5	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	MT-ND6--MT-TE	3	7	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0377	0.0879	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BC3C_URINARY_TRACT	0.91	1	0.1256	FALSE	499	1288	110	792	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	ANO10--CPNE4	4	1	ANO10	14991	chr3:43621845:-	CPNE4	34186	chr3:131759165:-	ONLY_REF_SPLICE	YES	20	0	0.2	1	0.0502	0.0126	ANO10->anoctamin_10,chr3:43396351-43733086:-,CPNE4->chr3:131252399-132004254:-,copine_4	BC3C_URINARY_TRACT	0.2	1	0.0628	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	DSCR3--TTC3	3	2	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	25	66	0.17	0.07	0.0377	0.0251	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	BC3C_URINARY_TRACT	0.07	0.17	0.0628	TRUE	0	9	0	44	1	FALSE	ACH-000593
BC3C_URINARY_TRACT	MIR205HG--C9orf3	3	2	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	209	562	0.02	0.01	0.0377	0.0251	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	BC3C_URINARY_TRACT	0.01	0.02	0.0628	FALSE	86	303	14	25	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	MT-ND6--MT-TE	3	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.0251	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BC3C_URINARY_TRACT	1	1	0.0628	FALSE	499	1288	110	792	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	RP11-123O10.4--GRIP1	3	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0.0251	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BC3C_URINARY_TRACT	1	1	0.0628	FALSE	416	2512	207	587	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	37	1380	0.1	0	0.0377	0.0126	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BC3C_URINARY_TRACT	0	0.1	0.0503	FALSE	0	0	0	434	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	NPM1P24--SET	3	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	37	1258	0.1	0	0.0377	0.0126	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BC3C_URINARY_TRACT	0	0.1	0.0503	FALSE	0	0	0	434	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	NPM1P24--SET	3	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	YES	37	1399	0.1	0	0.0377	0.0126	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BC3C_URINARY_TRACT	0	0.1	0.0503	FALSE	0	0	0	434	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	NPM1P24--SET	3	1	NPM1P24	1526	chr10:74677767:-	SET	12291	chr9:131456186:+	INCL_NON_REF_SPLICE	NO	37	1550	0.1	0	0.0377	0.0126	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BC3C_URINARY_TRACT	0	0.1	0.0503	FALSE	0	0	0	434	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	ALDOA--MT-CO3	3	0	ALDOA	8825	chr16:30078597:+	MT-CO3	15052	chrM:9252:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BC3C_URINARY_TRACT	1	1	0.0377	FALSE	0	0	0	5	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	BRI3BP--UBC	3	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	BC3C_URINARY_TRACT	1	1	0.0377	TRUE	5	99	5	34	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	TXN--PTGR1	3	0	TXN	1229	chr9:113018692:-	PTGR1	14662	chr9:114348445:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	TXN->Oncogene{Bushman},chr9:113006091-113018920:-,thioredoxin,PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	BC3C_URINARY_TRACT	1	1	0.0377	TRUE	0	0	0	3	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	ADM--RPS24	2	0	ADM	1550	chr11:10326776:+	RPS24	8276	chr10:79795110:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	ADM->adrenomedullin,chr11:10326227-10328944:+,RPS24->chr10:79793518-79816570:+,ribosomal_protein_S24	BC3C_URINARY_TRACT	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	ASB13--GDI2	2	0	ASB13	1087	chr10:5708472:-	GDI2	16977	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	LOCAL_REARRANGEMENT:-:[98628],ASB13->ankyrin_repeat_and_SOCS_box_containing_13,chr10:5680830-5708558:-,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	BC3C_URINARY_TRACT	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	CNTNAP3B--SP1	2	0	CNTNAP3B	2589	chr9:43709760:+	SP1	42451	chr12:53775894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	CNTNAP3B->chr9:43684902-43924049:+,contactin_associated_protein-like_3B,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	BC3C_URINARY_TRACT	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	DANCR--SERINC2	2	0	DANCR	1530	chr4:53579126:+	SERINC2	18554	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	BC3C_URINARY_TRACT	1	1	0.0251	TRUE	0	9	0	3	2	TRUE	ACH-000593
BC3C_URINARY_TRACT	PCDH9--FAM192A	2	0	PCDH9	5728	chr13:67799537:-	FAM192A	20892	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	PCDH9->chr13:66876967-67804468:-,protocadherin_9,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	BC3C_URINARY_TRACT	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	WTAPP1--RUVBL1	2	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	BC3C_URINARY_TRACT	1	1	0.0251	TRUE	9	252	6	66	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	XPR1--MPZL1	2	0	XPR1	2319	chr1:180651547:+	MPZL1	28963	chr1:167734820:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,MPZL1->chr1:167690429-167761156:+,myelin_protein_zero_like_1	BC3C_URINARY_TRACT	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000593
BC3C_URINARY_TRACT	IL1RAP--CLDN1	1	2	IL1RAP	1169	chr3:190232008:+	CLDN1	34498	chr3:190030825:-	ONLY_REF_SPLICE	YES	95	1124	0.03	0	0.0126	0.0251	IL1RAP->chr3:190231840-190375843:+,interleukin_1_receptor_accessory_protein,CLDN1->chr3:190023490-190040264:-,claudin_1	BC3C_URINARY_TRACT	0	0.03	0.0377	FALSE	0	2	0	3	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	AHCTF1--ZNF670	1	1	AHCTF1	1401	chr1:247094880:-	ZNF670	53085	chr1:247151557:-	ONLY_REF_SPLICE	YES	52	21	0.04	0.09	0.0126	0.0126	LOCAL_REARRANGEMENT:-:[13569],AHCTF1->AT-hook_containing_transcription_factor_1,chr1:247002400-247095280:-,ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670	BC3C_URINARY_TRACT	0.04	0.09	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	ATR--U2SURP	1	1	ATR	3414	chr3:142284963:-	U2SURP	75627	chr3:142751626:+	ONLY_REF_SPLICE	YES	23	96	0.08	0.02	0.0126	0.0126	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Vagina=1},ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	BC3C_URINARY_TRACT	0.02	0.08	0.0252	TRUE	0	10	0	10	7	TRUE	ACH-000593
BC3C_URINARY_TRACT	CHCHD6--EEFSEC	1	1	CHCHD6	4504	chr3:126452065:+	EEFSEC	24876	chr3:128060076:+	ONLY_REF_SPLICE	YES	95	69	0.02	0.03	0.0126	0.0126	CHCHD6->chr3:126423063-126679249:+,coiled-coil-helix-coiled-coil-helix_domain_containing_6,EEFSEC->chr3:127872297-128127485:+,eukaryotic_elongation_factor,_selenocysteine-tRNA-specific	BC3C_URINARY_TRACT	0.02	0.03	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	DNAJC24--IMMP1L	1	1	DNAJC24	2020	chr11:31392406:+	IMMP1L	34941	chr11:31455117:-	ONLY_REF_SPLICE	YES	44	24	0.04	0.08	0.0126	0.0126	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Nerve_-_Tibial=2,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Pancreas=1},LOCAL_INVERSION:+:-:[552],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	BC3C_URINARY_TRACT	0.04	0.08	0.0252	TRUE	0	4	0	9	1	FALSE	ACH-000593
BC3C_URINARY_TRACT	LHFPL2--TBCA	1	1	LHFPL2	7033	chr5:77928087:-	TBCA	30719	chr5:76989177:-	ONLY_REF_SPLICE	NO	36	923	0.05	0	0.0126	0.0126	LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	BC3C_URINARY_TRACT	0	0.05	0.0252	FALSE	0	0	0	2	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	MIR205HG--C9orf3	1	1	MIR205HG	2657	chr1:209603821:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	NO	274	562	0.01	0	0.0126	0.0126	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	BC3C_URINARY_TRACT	0	0.01	0.0252	FALSE	7	55	2	6	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	NAA50--PHLDB2	1	1	NAA50	1359	chr3:113464789:-	PHLDB2	18480	chr3:111602911:+	ONLY_REF_SPLICE	NO	430	72	0	0.03	0.0126	0.0126	NAA50->N(alpha)-acetyltransferase_50,_NatE_catalytic_subunit,chr3:113435307-113465147:-,PHLDB2->chr3:111451344-111695364:+,pleckstrin_homology_like_domain_family_B_member_2	BC3C_URINARY_TRACT	0	0.03	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	ORC6--VPS35	1	1	ORC6	1128	chr16:46723682:+	VPS35	19898	chr16:46711310:-	ONLY_REF_SPLICE	YES	43	374	0.04	0.01	0.0126	0.0126	LOCAL_INVERSION:+:-:[125],ORC6->chr16:46723555-46732306:+,origin_recognition_complex_subunit_6,VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-	BC3C_URINARY_TRACT	0.01	0.04	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0126	0.0126	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BC3C_URINARY_TRACT	1	1	0.0252	FALSE	93	270	15	244	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	SFPQ--CAPZB	1	1	SFPQ	7033	chr1:35652602:-	CAPZB	24766	chr1:19712120:-	ONLY_REF_SPLICE	YES	650	801	0	0	0.0126	0.0126	SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	BC3C_URINARY_TRACT	0	0	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	STK11--SBNO2	1	1	STK11	3716	chr19:1207202:+	SBNO2	23624	chr19:1149441:-	ONLY_REF_SPLICE	YES	57	53	0.03	0.04	0.0126	0.0126	LOCAL_INVERSION:+:-:[15124],STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	BC3C_URINARY_TRACT	0.03	0.04	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	TKT--DAZAP1	1	1	TKT	1217	chr3:53289852:-	DAZAP1	25507	chr19:1417499:+	ONLY_REF_SPLICE	YES	2255	209	0	0.01	0.0126	0.0126	TKT->chr3:53258723-53290068:-,transketolase,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	BC3C_URINARY_TRACT	0	0.01	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000593
BC3C_URINARY_TRACT	ZFYVE21--KLC1	1	1	ZFYVE21	1250	chr14:104182316:+	KLC1	34861	chr14:104166992:+	ONLY_REF_SPLICE	NO	166	90	0.01	0.02	0.0126	0.0126	GTEx_FI:{Esophagus=[count:4=pct:1.0],Brain=[count:3=pct:0.5],Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Colon=[count:1=pct:0.5],Pituitary=[count:1=pct:1.9],Breast=[count:1=pct:0.9]},GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_REARRANGEMENT:+:[14179],ZFYVE21->chr14:104182067-104200005:+,zinc_finger_FYVE-type_containing_21,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	BC3C_URINARY_TRACT	0.01	0.02	0.0252	FALSE	10	10	1	10	0	FALSE	ACH-000593
SH10TC_STOMACH	EZH2--ZCCHC8	107	87	EZH2	14183	chr7:148513776:-	ZCCHC8	36741	chr12:122962839:-	ONLY_REF_SPLICE	YES	163	61	0.54	0.76	1.4129	1.1488	EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit,ZCCHC8->chr12:122957417-122985518:-,zinc_finger_CCHC-type_containing_8	SH10TC_STOMACH	0.54	0.76	2.5617	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	CCDC91--ASIC2	95	42	CCDC91	25881	chr12:28637098:+	ASIC2	41851	chr17:31439085:-	ONLY_REF_SPLICE	YES	143	0	0.49	1	1.2544	0.5546	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,ASIC2->acid_sensing_ion_channel_subunit_2,chr17:31340105-32501983:-	SH10TC_STOMACH	0.49	1	1.809	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	TIMM23B--LINC00843	43	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5678	0.1849	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SH10TC_STOMACH	1	1	0.7527	TRUE	508	994	45	981	0	FALSE	ACH-000764
SH10TC_STOMACH	NPM1P24--SET	44	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.581	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SH10TC_STOMACH	1	1	0.581	TRUE	0	0	0	434	0	FALSE	ACH-000764
SH10TC_STOMACH	SFSWAP--EP400	39	20	SFSWAP	4873	chr12:132199498:+	EP400	65951	chr12:132534868:+	ONLY_REF_SPLICE	YES	68	29	0.46	0.67	0.515	0.2641	SFSWAP->chr12:132195626-132284282:+,splicing_factor,_suppressor_of_white-apricot_homolog,EP400->E1A_binding_protein_p400,Oncogene{Bushman},chr12:132434508-132565005:+	SH10TC_STOMACH	0.46	0.67	0.7791	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	RP11-179A16.1--RP11-993B23.3	32	10	RP11-179A16.1	5792	chr11:82067554:-	RP11-993B23.3	15843	chr12:28111452:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4225	0.132	RP11-179A16.1->chr11:81590893-82429124:-,RP11-993B23.3->chr12:28111450-28122746:+	SH10TC_STOMACH	1	1	0.5545	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	TIMM23--RP11-464F9.1	30	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	421	1	0.07	0.97	0.3961	0.0132	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SH10TC_STOMACH	0.07	0.97	0.4093	TRUE	519	3926	326	965	0	FALSE	ACH-000764
SH10TC_STOMACH	SUZ12P--TMEM98	21	20	SUZ12P	1513	chr17:29036829:+	TMEM98	22549	chr17:31258493:+	ONLY_REF_SPLICE	YES	26	427	0.61	0.09	0.2773	0.2641	SUZ12P->chr17:29036317-29117926:+,TMEM98->chr17:31254928-31272124:+,transmembrane_protein_98	SH10TC_STOMACH	0.09	0.61	0.5414	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	SUZ12P--TMEM98	20	23	SUZ12P	1513	chr17:29036829:+	TMEM98	22401	chr17:31258345:+	ONLY_REF_SPLICE	YES	26	159	0.62	0.21	0.2641	0.3037	SUZ12P->chr17:29036317-29117926:+,TMEM98->chr17:31254928-31272124:+,transmembrane_protein_98	SH10TC_STOMACH	0.21	0.62	0.5678	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	ACACA--MYO1D	21	9	ACACA	1558	chr17:35766352:-	MYO1D	105498	chr17:30986356:-	ONLY_REF_SPLICE	YES	8	23	0.79	0.57	0.2773	0.1188	ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,MYO1D->chr17:30819540-31204195:-,myosin_ID	SH10TC_STOMACH	0.57	0.79	0.3961	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	MT-TA--MT-TC	21	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2773	0.0396	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SH10TC_STOMACH	1	1	0.3169	FALSE	462	80	0	856	0	FALSE	ACH-000764
SH10TC_STOMACH	MT-ND4--MT-ATP8	20	2	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	12578	1461	0	0.01	0.2641	0.0264	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SH10TC_STOMACH	0	0.01	0.2905	FALSE	231	217	16	283	0	FALSE	ACH-000764
SH10TC_STOMACH	ORC4--HOOK3	18	5	ORC4	1946	chr2:148778202:-	HOOK3	48124	chr8:42862990:+	ONLY_REF_SPLICE	YES	12	83	0.66	0.22	0.2377	0.066	ORC4->chr2:148687968-148779147:-,origin_recognition_complex_subunit_4,HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3	SH10TC_STOMACH	0.22	0.66	0.3037	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	RP11-680G10.1--GSE1	17	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	29	1	0.43	0.2245	0.066	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SH10TC_STOMACH	0.43	1	0.2905	TRUE	465	1949	224	605	0	FALSE	ACH-000764
SH10TC_STOMACH	GOSR2--EYA2	13	18	GOSR2	9200	chr17:45016070:+	EYA2	36387	chr20:45808446:+	ONLY_REF_SPLICE	YES	203	0	0.13	1	0.1717	0.2377	GOSR2->chr17:45000483-45105003:+,golgi_SNAP_receptor_complex_member_2,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	SH10TC_STOMACH	0.13	1	0.4094	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	SUPT6H--TEFM	11	16	SUPT6H	17212	chr17:27015236:+	TEFM	35753	chr17:29227580:-	ONLY_REF_SPLICE	YES	116	57	0.19	0.32	0.1452	0.2113	SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+,TEFM->chr17:29224354-29233838:-,transcription_elongation_factor,_mitochondrial	SH10TC_STOMACH	0.19	0.32	0.3565	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	RP11-319G9.5--WWOX	13	7	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	22	1	0.48	0.1717	0.0924	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	SH10TC_STOMACH	0.48	1	0.2641	FALSE	154	425	28	76	0	FALSE	ACH-000764
SH10TC_STOMACH	ASUN--TADA2A	13	5	ASUN	8980	chr12:27075549:-	TADA2A	22757	chr17:35771356:+	ONLY_REF_SPLICE	YES	400	9	0.04	0.67	0.1717	0.066	ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-,TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A	SH10TC_STOMACH	0.04	0.67	0.2377	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	SNRPD1--NDC80	11	13	SNRPD1	3392	chr18:19203900:+	NDC80	24480	chr18:2606414:+	ONLY_REF_SPLICE	YES	484	289	0.05	0.08	0.1452	0.1717	SNRPD1->chr18:19192228-19210417:+,small_nuclear_ribonucleoprotein_D1_polypeptide,NDC80->NDC80_kinetochore_complex_component,chr18:2571510-2616634:+	SH10TC_STOMACH	0.05	0.08	0.3169	TRUE	0	0	0	1	0	FALSE	ACH-000764
SH10TC_STOMACH	MED24--C17orf104	10	9	MED24	4669	chr17:38209551:-	C17orf104	24514	chr17:42734495:+	ONLY_REF_SPLICE	YES	122	0	0.13	1	0.132	0.1188	MED24->chr17:38175350-38217468:-,mediator_complex_subunit_24,C17orf104->chr17:42733762-42767676:+	SH10TC_STOMACH	0.13	1	0.2508	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	HSPBP1--GRK5	12	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1585	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SH10TC_STOMACH	1	1	0.1585	TRUE	1	39	0	134	39	FALSE	ACH-000764
SH10TC_STOMACH	LINC00941--DLG2	10	5	LINC00941	2174	chr12:30949150:+	DLG2	24740	chr11:84245774:-	ONLY_REF_SPLICE	YES	98	0	0.13	1	0.132	0.066	LINC00941->chr12:30947977-30955645:+,long_intergenic_non-protein_coding_RNA_941,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	SH10TC_STOMACH	0.13	1	0.198	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	ORC4--HOOK3	6	11	ORC4	1971	chr2:148778177:-	HOOK3	48124	chr8:42862990:+	ONLY_REF_SPLICE	YES	33	83	0.34	0.17	0.0792	0.1452	ORC4->chr2:148687968-148779147:-,origin_recognition_complex_subunit_4,HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3	SH10TC_STOMACH	0.17	0.34	0.2244	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	RP11-680G10.1--GSE1	6	11	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.85	0.0792	0.1452	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SH10TC_STOMACH	0.85	1	0.2244	TRUE	458	1351	185	561	0	FALSE	ACH-000764
SH10TC_STOMACH	C15orf57--CBX3	6	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	169	50	0.08	0.23	0.0792	0.1188	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SH10TC_STOMACH	0.08	0.23	0.198	TRUE	267	562	48	632	0	FALSE	ACH-000764
SH10TC_STOMACH	MT-TA--MT-TC	7	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0924	0.0528	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SH10TC_STOMACH	1	1	0.1452	FALSE	462	80	0	856	0	FALSE	ACH-000764
SH10TC_STOMACH	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0924	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SH10TC_STOMACH	1	1	0.0924	FALSE	292	1546	117	613	0	FALSE	ACH-000764
SH10TC_STOMACH	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0792	0.0396	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SH10TC_STOMACH	1	1	0.1188	FALSE	462	80	0	856	0	FALSE	ACH-000764
SH10TC_STOMACH	MT-ND4--MT-ATP8	6	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0792	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SH10TC_STOMACH	1	1	0.0792	FALSE	230	198	14	283	0	FALSE	ACH-000764
SH10TC_STOMACH	ZNF654--HMGB2	6	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0792	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SH10TC_STOMACH	1	1	0.0792	TRUE	0	0	0	518	0	FALSE	ACH-000764
SH10TC_STOMACH	SUPT6H--TEFM	3	10	SUPT6H	17212	chr17:27015236:+	TEFM	35794	chr17:29227539:-	ONLY_REF_SPLICE	YES	116	53	0.1	0.2	0.0396	0.132	SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+,TEFM->chr17:29224354-29233838:-,transcription_elongation_factor,_mitochondrial	SH10TC_STOMACH	0.1	0.2	0.1716	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	DSCR4--KCNJ6	4	5	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	22	1	0.29	0.9	0.0528	0.066	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	SH10TC_STOMACH	0.29	0.9	0.1188	FALSE	0	24	0	27	0	FALSE	ACH-000764
SH10TC_STOMACH	MT-ATP6--MT-CO1	5	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	10061	21807	0	0	0.066	0.0132	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SH10TC_STOMACH	0	0	0.0792	FALSE	183	104	9	328	0	FALSE	ACH-000764
SH10TC_STOMACH	RP11-179A16.1--RP11-993B23.3	4	3	RP11-179A16.1	3440	chr11:82384134:-	RP11-993B23.3	15843	chr12:28111452:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0.0396	RP11-179A16.1->chr11:81590893-82429124:-,RP11-993B23.3->chr12:28111450-28122746:+	SH10TC_STOMACH	1	1	0.0924	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	C15orf57--CBX3	3	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	166	50	0.05	0.15	0.0396	0.0792	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SH10TC_STOMACH	0.05	0.15	0.1188	TRUE	267	562	48	632	0	FALSE	ACH-000764
SH10TC_STOMACH	CTD-2008L17.1--RP11-456O19.2	3	5	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0396	0.066	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SH10TC_STOMACH	0.89	1	0.1056	FALSE	33	240	4	98	0	FALSE	ACH-000764
SH10TC_STOMACH	MT-ATP6--MT-CO1	4	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10206	22400	0	0	0.0528	0.0132	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SH10TC_STOMACH	0	0	0.066	FALSE	183	104	9	328	0	FALSE	ACH-000764
SH10TC_STOMACH	MT-ND4--MT-ATP8	4	1	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	16510	688	0	0.01	0.0528	0.0132	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SH10TC_STOMACH	0	0.01	0.066	FALSE	231	217	16	283	0	FALSE	ACH-000764
SH10TC_STOMACH	HSPBP1--GRK5	4	0	HSPBP1	1855	chr19:55790895:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SH10TC_STOMACH	1	1	0.0528	TRUE	1	39	0	134	39	FALSE	ACH-000764
SH10TC_STOMACH	MT-ND4--MT-ATP8	4	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SH10TC_STOMACH	1	1	0.0528	FALSE	231	205	14	283	0	FALSE	ACH-000764
SH10TC_STOMACH	MT-TA--MT-TC	3	4	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0.0528	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SH10TC_STOMACH	1	1	0.0924	FALSE	462	80	0	856	0	FALSE	ACH-000764
SH10TC_STOMACH	MT-ND4--MT-ATP8	3	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	12595	9	0	0.4	0.0396	0.0396	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SH10TC_STOMACH	0	0.4	0.0792	FALSE	231	217	16	283	0	FALSE	ACH-000764
SH10TC_STOMACH	RP11-476K15.1--CTD-2015H3.2	3	3	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	16	0	0.27	1	0.0396	0.0396	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	SH10TC_STOMACH	0.27	1	0.0792	FALSE	0	46	0	73	0	FALSE	ACH-000764
SH10TC_STOMACH	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0.0396	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SH10TC_STOMACH	1	1	0.0792	FALSE	515	4851	409	746	0	FALSE	ACH-000764
SH10TC_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	14846	0	0	1	0.0396	0.0264	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SH10TC_STOMACH	0	1	0.066	FALSE	231	217	16	283	0	FALSE	ACH-000764
SH10TC_STOMACH	MT-ND4--MT-ATP8	3	1	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16856	53	0	0.07	0.0396	0.0132	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SH10TC_STOMACH	0	0.07	0.0528	FALSE	231	217	16	283	0	FALSE	ACH-000764
SH10TC_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SH10TC_STOMACH	1	1	0.0396	FALSE	231	205	14	283	0	FALSE	ACH-000764
SH10TC_STOMACH	DLG2--GBE1	2	2	DLG2	34415	chr11:83497733:-	GBE1	67656	chr3:81720104:-	ONLY_REF_SPLICE	YES	0	51	1	0.07	0.0264	0.0264	DLG2->chr11:83166055-85338966:-,discs_large_homolog_2,GBE1->chr3:81538850-81811312:-,glucan_(1,4-alpha-),_branching_enzyme_1	SH10TC_STOMACH	0.07	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	TMTC1--PPFIBP1	2	2	TMTC1	7586	chr12:29904599:-	PPFIBP1	44832	chr12:27731085:+	ONLY_REF_SPLICE	NO	301	241	0.01	0.02	0.0264	0.0264	TMTC1->chr12:29653773-29937692:-,transmembrane_and_tetratricopeptide_repeat_containing_1,PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+	SH10TC_STOMACH	0.01	0.02	0.0528	FALSE	0	0	0	1	0	FALSE	ACH-000764
SH10TC_STOMACH	DSCR4--KCNJ6	1	5	DSCR4	9495	chr21:39325124:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	NO	1	1	0.86	0.86	0.0132	0.066	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	SH10TC_STOMACH	0.86	0.86	0.0792	FALSE	0	0	0	2	0	FALSE	ACH-000764
SH10TC_STOMACH	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	11	0	0.21	1	0.0264	0.0132	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SH10TC_STOMACH	0.21	1	0.0396	FALSE	164	806	69	479	0	FALSE	ACH-000764
SH10TC_STOMACH	C17orf76-AS1--PTCD3	2	0	C17orf76-AS1	1593	chr17:16342728:+	PTCD3	33495	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	SH10TC_STOMACH	1	1	0.0264	TRUE	0	3	0	8	0	TRUE	ACH-000764
SH10TC_STOMACH	ORC4--HOOK3	1	4	ORC4	1946	chr2:148778202:-	HOOK3	49207	chr8:42865448:+	ONLY_REF_SPLICE	YES	12	66	0.29	0.07	0.0132	0.0528	ORC4->chr2:148687968-148779147:-,origin_recognition_complex_subunit_4,HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3	SH10TC_STOMACH	0.07	0.29	0.066	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	SNHG16--GNAS	2	0	SNHG16	1092	chr17:74553939:+	GNAS	27053	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SH10TC_STOMACH	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000764
SH10TC_STOMACH	RPSAP52--HMGA2	1	3	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	188	1	0.02	0.0132	0.0396	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SH10TC_STOMACH	0.02	1	0.0528	FALSE	0	59	0	125	0	FALSE	ACH-000764
SH10TC_STOMACH	YWHAE--CRK	1	3	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	2731	200	0	0.02	0.0132	0.0396	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SH10TC_STOMACH	0	0.02	0.0528	FALSE	6	50	7	115	0	FALSE	ACH-000764
SH10TC_STOMACH	ATF7IP--GNAS	1	2	ATF7IP	1152	chr12:14518761:+	GNAS	49438	chr20:57470667:+	ONLY_REF_SPLICE	NO	205	982	0.01	0	0.0132	0.0264	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},ATF7IP->Oncogene{Bushman},activating_transcription_factor_7_interacting_protein,chr12:14518610-14651697:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SH10TC_STOMACH	0	0.01	0.0396	FALSE	0	0	0	2	0	FALSE	ACH-000764
SH10TC_STOMACH	RP11-114H23.1--RP11-114H23.2	1	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0132	0.0264	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SH10TC_STOMACH	1	1	0.0396	FALSE	81	155	12	160	0	FALSE	ACH-000764
SH10TC_STOMACH	SNAPC1--HIF1A	1	2	SNAPC1	9059	chr14:62259620:+	HIF1A	19322	chr14:62188227:+	ONLY_REF_SPLICE	YES	268	899	0.01	0	0.0132	0.0264	LOCAL_REARRANGEMENT:+:[14099],SNAPC1->chr14:62229075-62263146:+,small_nuclear_RNA_activating_complex_polypeptide_1,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	SH10TC_STOMACH	0	0.01	0.0396	FALSE	0	0	0	1	0	FALSE	ACH-000764
SH10TC_STOMACH	AP2B1--RP11-664H17.1	1	1	AP2B1	29264	chr17:34044368:+	RP11-664H17.1	39516	chr12:20251686:+	ONLY_REF_SPLICE	YES	472	0	0	1	0.0132	0.0132	AP2B1->adaptor_related_protein_complex_2_beta_1_subunit,chr17:33905065-34053436:+,RP11-664H17.1->chr12:20167714-20251802:+	SH10TC_STOMACH	0	1	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000764
SH10TC_STOMACH	C14orf37--PSMA3	1	1	C14orf37	2258	chr14:58758353:-	PSMA3	28539	chr14:58730423:+	ONLY_REF_SPLICE	YES	1	1167	0.67	0	0.0132	0.0132	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	SH10TC_STOMACH	0	0.67	0.0264	FALSE	0	1	0	4	0	FALSE	ACH-000764
SH10TC_STOMACH	CCDC91--YAF2	1	1	CCDC91	5569	chr12:28343574:+	YAF2	48527	chr12:42555567:-	ONLY_REF_SPLICE	YES	202	94	0.01	0.02	0.0132	0.0132	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-	SH10TC_STOMACH	0.01	0.02	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000764
SH10TC_STOMACH	CD44--PDHX	1	1	CD44	1501	chr11:35160917:+	PDHX	40918	chr11:35006117:+	ONLY_REF_SPLICE	YES	2818	147	0	0.01	0.0132	0.0132	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SH10TC_STOMACH	0	0.01	0.0264	FALSE	0	2	0	7	0	FALSE	ACH-000764
SH10TC_STOMACH	DST--ZNF451	1	1	DST	13246	chr6:56564451:-	ZNF451	134122	chr6:56963859:+	ONLY_REF_SPLICE	YES	53	46	0.04	0.04	0.0132	0.0132	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451	SH10TC_STOMACH	0.04	0.04	0.0264	TRUE	0	0	0	1	0	FALSE	ACH-000764
SH10TC_STOMACH	MAP3K9--ANXA2	1	1	MAP3K9	3183	chr14:71267384:-	ANXA2	40719	chr15:60678285:-	ONLY_REF_SPLICE	YES	14	714	0.12	0	0.0132	0.0132	MAP3K9->chr14:71189243-71276251:-,mitogen-activated_protein_kinase_kinase_kinase_9,ANXA2->annexin_A2,chr15:60639333-60695082:-	SH10TC_STOMACH	0	0.12	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000764
SH10TC_STOMACH	MAPKAP1--GNAS	1	1	MAPKAP1	6019	chr9:128419930:-	GNAS	48578	chr20:57470667:+	ONLY_REF_SPLICE	YES	400	982	0	0	0.0132	0.0132	GTEx&tcga_normals:1/3694=0.03%,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SH10TC_STOMACH	0	0	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000764
SH10TC_STOMACH	PRR4--YBX3	1	1	PRR4	1192	chr12:11324021:-	YBX3	27858	chr12:10871742:-	ONLY_REF_SPLICE	NO	61	131	0.03	0.02	0.0132	0.0132	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),YBX3->Y-box_binding_protein_3,chr12:10851683-10875911:-	SH10TC_STOMACH	0.02	0.03	0.0264	TRUE	0	0	0	1	0	FALSE	ACH-000764
SH10TC_STOMACH	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0132	0.0132	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SH10TC_STOMACH	0.67	1	0.0264	FALSE	16	356	14	466	0	FALSE	ACH-000764
PANC1_PANCREAS	TIMM23B--LINC00843	216	54	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.9441	0.486	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PANC1_PANCREAS	0.99	1	2.4301	TRUE	508	994	45	981	0	FALSE	ACH-000164
PANC1_PANCREAS	TIMM23--RP11-464F9.1	127	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	299	1	0.3	0.99	1.143	0.027	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PANC1_PANCREAS	0.3	0.99	1.17	TRUE	519	3926	326	965	0	FALSE	ACH-000164
PANC1_PANCREAS	ACTN4--C19orf47	33	10	ACTN4	1259	chr19:39138547:+	C19orf47	31632	chr19:40839836:-	ONLY_REF_SPLICE	YES	3280	22	0.01	0.66	0.297	0.09	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,C19orf47->chr19:40825443-40854434:-,chromosome_19_open_reading_frame_47	PANC1_PANCREAS	0.01	0.66	0.387	TRUE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-ND4--MT-ND4L	6	109	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.054	0.981	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1_PANCREAS	0.99	1	1.035	FALSE	344	821	44	306	0	FALSE	ACH-000164
PANC1_PANCREAS	ACTN4--C19orf47	27	16	ACTN4	1259	chr19:39138547:+	C19orf47	29359	chr19:40842314:-	ONLY_REF_SPLICE	YES	3280	10	0.01	0.81	0.243	0.144	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,C19orf47->chr19:40825443-40854434:-,chromosome_19_open_reading_frame_47	PANC1_PANCREAS	0.01	0.81	0.387	TRUE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-ND4--MT-ND4L	25	23	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	289	0	0.14	1	0.225	0.207	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1_PANCREAS	0.14	1	0.432	FALSE	344	827	44	306	0	FALSE	ACH-000164
PANC1_PANCREAS	OR51S1--TP53I11	30	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.27	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	PANC1_PANCREAS	1	1	0.27	TRUE	402	216	10	229	0	FALSE	ACH-000164
PANC1_PANCREAS	ACTN4--C19orf47	23	5	ACTN4	1259	chr19:39138547:+	C19orf47	33833	chr19:40834457:-	ONLY_REF_SPLICE	YES	3280	19	0.01	0.6	0.207	0.045	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,C19orf47->chr19:40825443-40854434:-,chromosome_19_open_reading_frame_47	PANC1_PANCREAS	0.01	0.6	0.252	TRUE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	MTAP--DMRTA1	20	4	MTAP	7556	chr9:21818201:+	DMRTA1	25056	chr9:22451063:+	ONLY_REF_SPLICE	YES	0	2	1	0.92	0.18	0.036	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	PANC1_PANCREAS	0.92	1	0.216	TRUE	0	1	0	2	0	TRUE	ACH-000164
PANC1_PANCREAS	MT-TA--MT-TC	20	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.18	0.009	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC1_PANCREAS	1	1	0.189	FALSE	462	80	0	856	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-CO3--MT-ATP6	8	48	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	3	0.97	0.95	0.072	0.432	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1_PANCREAS	0.95	0.97	0.504	FALSE	189	492	56	216	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-CO3--MT-ATP6	7	48	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	3	0.96	0.95	0.063	0.432	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1_PANCREAS	0.95	0.96	0.495	FALSE	189	492	56	216	0	FALSE	ACH-000164
PANC1_PANCREAS	HSPBP1--GRK5	18	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.162	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	PANC1_PANCREAS	1	1	0.162	TRUE	1	39	0	134	39	FALSE	ACH-000164
PANC1_PANCREAS	RP11-680G10.1--GSE1	15	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	47	1	0.28	0.135	0.027	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PANC1_PANCREAS	0.28	1	0.162	TRUE	465	1949	224	605	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-CO3--MT-ATP6	3	49	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	6	3	0.9	0.95	0.027	0.441	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1_PANCREAS	0.9	0.95	0.468	FALSE	189	492	56	216	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-CO3--MT-ATP6	3	46	MT-CO3	1075	chrM:9281:+	MT-ATP6	5166	chrM:8908:+	INCL_NON_REF_SPLICE	YES	1	23	0.98	0.68	0.027	0.414	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1_PANCREAS	0.68	0.98	0.441	FALSE	189	492	56	216	0	FALSE	ACH-000164
PANC1_PANCREAS	MOB3A--AP3D1	11	3	MOB3A	5013	chr19:2085174:-	AP3D1	16622	chr19:2138713:-	ONLY_REF_SPLICE	YES	27	35	0.34	0.29	0.099	0.027	LOCAL_REARRANGEMENT:-:[4316],MOB3A->MOB_kinase_activator_3A,chr19:2071037-2096672:-,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	PANC1_PANCREAS	0.29	0.34	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	MT-ND4--MT-ND4L	3	35	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	247	0	0.13	1	0.027	0.315	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1_PANCREAS	0.13	1	0.342	FALSE	344	827	44	306	0	FALSE	ACH-000164
PANC1_PANCREAS	RP11-680G10.1--GSE1	11	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	19	1	0.42	0.099	0.027	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PANC1_PANCREAS	0.42	1	0.126	TRUE	458	1351	185	561	0	FALSE	ACH-000164
PANC1_PANCREAS	NRIP1--AF127936.7	11	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.099	0.018	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC1_PANCREAS	0.87	1	0.117	FALSE	292	1546	117	613	0	FALSE	ACH-000164
PANC1_PANCREAS	ACTN4--C19orf47	8	13	ACTN4	1259	chr19:39138547:+	C19orf47	29542	chr19:40842131:-	ONLY_REF_SPLICE	YES	3280	19	0.01	0.53	0.072	0.117	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,C19orf47->chr19:40825443-40854434:-,chromosome_19_open_reading_frame_47	PANC1_PANCREAS	0.01	0.53	0.189	TRUE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	AL589743.1--RP11-536C10.17	11	1	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	17	0	0.41	1	0.099	0.009	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	PANC1_PANCREAS	0.41	1	0.108	TRUE	0	33	0	45	33	FALSE	ACH-000164
PANC1_PANCREAS	AP000525.9--LA16c-60G3.6	11	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	16	0	0.43	1	0.099	0.009	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	PANC1_PANCREAS	0.43	1	0.108	TRUE	0	42	0	133	42	FALSE	ACH-000164
PANC1_PANCREAS	MT-ND6--MT-TE	11	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.099	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC1_PANCREAS	1	1	0.099	FALSE	499	1288	110	792	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-ND4--MT-ND4L	5	23	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.045	0.207	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1_PANCREAS	0.88	1	0.252	FALSE	344	826	44	306	0	FALSE	ACH-000164
PANC1_PANCREAS	C15orf57--CBX3	8	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	36	89	0.33	0.17	0.072	0.09	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PANC1_PANCREAS	0.17	0.33	0.162	TRUE	267	562	48	632	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-CO3--MT-ATP6	10	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	2	1	0.85	0.92	0.09	0.009	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1_PANCREAS	0.85	0.92	0.099	FALSE	189	492	56	216	0	FALSE	ACH-000164
PANC1_PANCREAS	ANP32B--APP	10	0	ANP32B	8121	chr9:100773592:+	APP	24365	chr21:27394316:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.09	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	PANC1_PANCREAS	1	1	0.09	TRUE	0	0	0	7	0	TRUE	ACH-000164
PANC1_PANCREAS	PLXDC1--TAF13	10	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.09	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	PANC1_PANCREAS	1	1	0.09	TRUE	7	10	0	216	0	FALSE	ACH-000164
PANC1_PANCREAS	ACTN4--C19orf47	9	2	ACTN4	1259	chr19:39138547:+	C19orf47	34971	chr19:40832393:-	ONLY_REF_SPLICE	YES	3280	48	0	0.19	0.081	0.018	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,C19orf47->chr19:40825443-40854434:-,chromosome_19_open_reading_frame_47	PANC1_PANCREAS	0	0.19	0.099	FALSE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	GAREM--NOL4	9	2	GAREM	2318	chr18:29972858:-	NOL4	32560	chr18:31673561:-	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.081	0.018	GAREM->chr18:29704840-30050447:-,NOL4->chr18:31431064-31804916:-,nucleolar_protein_4	PANC1_PANCREAS	0.79	1	0.099	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	RECK--ZNF780B	8	6	RECK	1666	chr9:36037095:+	ZNF780B	38270	chr19:40542533:-	ONLY_REF_SPLICE	YES	44	32	0.24	0.3	0.072	0.054	RECK->chr9:36036430-36124448:+,reversion_inducing_cysteine_rich_protein_with_kazal_motifs,ZNF780B->chr19:40534167-40562116:-,zinc_finger_protein_780B	PANC1_PANCREAS	0.24	0.3	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	RP11-96H19.1--RP11-446N19.1	8	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.072	0.045	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PANC1_PANCREAS	0.93	1	0.117	FALSE	515	4851	409	746	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-CO3--MT-ATP6	3	24	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.96	0.027	0.216	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1_PANCREAS	0.96	1	0.243	FALSE	189	492	56	216	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-ND6--MT-TE	7	8	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.063	0.072	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC1_PANCREAS	1	1	0.135	FALSE	499	1288	110	792	0	FALSE	ACH-000164
PANC1_PANCREAS	WTAPP1--RUVBL1	9	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.081	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	PANC1_PANCREAS	1	1	0.081	TRUE	9	252	6	66	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-CO3--MT-ATP6	7	7	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	3	1	0.82	0.93	0.063	0.063	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1_PANCREAS	0.82	0.93	0.126	FALSE	189	492	56	216	0	FALSE	ACH-000164
PANC1_PANCREAS	RP11-123O10.4--GRIP1	7	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.063	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PANC1_PANCREAS	1	1	0.063	FALSE	416	2512	207	587	0	FALSE	ACH-000164
PANC1_PANCREAS	SCARB1--UBC	7	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.063	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	PANC1_PANCREAS	1	1	0.063	TRUE	55	66	6	101	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-CO3--MT-ATP6	3	15	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	1	0.95	0.95	0.027	0.135	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1_PANCREAS	0.95	0.95	0.162	FALSE	189	492	56	216	0	FALSE	ACH-000164
PANC1_PANCREAS	NRIP1--AF127936.7	6	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.64	1	0.054	0.027	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC1_PANCREAS	0.64	1	0.081	FALSE	125	705	46	456	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-ND4--MT-ND4L	4	10	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	15	0	0.48	1	0.036	0.09	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1_PANCREAS	0.48	1	0.126	FALSE	344	827	44	306	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-ND6--MT-TE	6	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.054	0.009	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC1_PANCREAS	0.88	1	0.063	FALSE	499	1288	110	792	0	FALSE	ACH-000164
PANC1_PANCREAS	C15orf57--CBX3	4	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	32	91	0.27	0.12	0.036	0.072	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PANC1_PANCREAS	0.12	0.27	0.108	TRUE	267	562	48	632	0	FALSE	ACH-000164
PANC1_PANCREAS	PRDM16--SKI	6	0	PRDM16	1129	chr1:2985860:+	SKI	35669	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.054	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1]},PRDM16->Oncogene{Bushman},PR_domain_16,chr1:2985732-3355185:+,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	PANC1_PANCREAS	1	1	0.054	TRUE	2	0	0	4	0	FALSE	ACH-000164
PANC1_PANCREAS	RP11-96H19.1--RP11-446N19.1	4	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0.072	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PANC1_PANCREAS	1	1	0.108	FALSE	407	2205	196	549	0	FALSE	ACH-000164
PANC1_PANCREAS	P4HB--ACTN4	5	2	P4HB	9676	chr17:79801748:-	ACTN4	28025	chr19:39214930:+	INCL_NON_REF_SPLICE	YES	1403	2608	0	0	0.045	0.018	P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+	PANC1_PANCREAS	0	0	0.063	FALSE	0	0	0	2	0	FALSE	ACH-000164
PANC1_PANCREAS	ACTN4--C19orf47	1	16	ACTN4	1259	chr19:39138547:+	C19orf47	28254	chr19:40847797:-	ONLY_REF_SPLICE	YES	3280	0	0.01	1	0.009	0.144	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,C19orf47->chr19:40825443-40854434:-,chromosome_19_open_reading_frame_47	PANC1_PANCREAS	0.01	1	0.153	TRUE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	EIF1--HSP90AB1	5	0	EIF1	1112	chr17:39845248:+	HSP90AB1	12471	chr6:44219510:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.045	0	GTEx&tcga_normals:1/3694=0.03%,EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1	PANC1_PANCREAS	1	1	0.045	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	MAEA--CTBP1	5	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.045	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	PANC1_PANCREAS	1	1	0.045	TRUE	3	14	2	43	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-CO3--MT-ATP6	5	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.045	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1_PANCREAS	1	1	0.045	FALSE	189	492	56	216	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-ND6--MT-TE	5	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.045	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC1_PANCREAS	1	1	0.045	FALSE	499	1288	110	792	0	FALSE	ACH-000164
PANC1_PANCREAS	ACTN4--AKT2	4	3	ACTN4	1259	chr19:39138547:+	AKT2	36218	chr19:40771258:-	ONLY_REF_SPLICE	YES	3280	2358	0	0	0.036	0.027	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	PANC1_PANCREAS	0	0	0.063	FALSE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-ND4--MT-ND4L	4	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0.027	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1_PANCREAS	1	1	0.063	FALSE	344	821	44	306	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-ND6--MT-TE	3	7	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.027	0.063	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC1_PANCREAS	1	1	0.09	FALSE	499	1288	110	792	0	FALSE	ACH-000164
PANC1_PANCREAS	CD44--PDHX	4	2	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	2601	124	0	0.05	0.036	0.018	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	PANC1_PANCREAS	0	0.05	0.054	FALSE	0	7	0	19	1	FALSE	ACH-000164
PANC1_PANCREAS	MT-TA--MT-TC	4	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0.018	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC1_PANCREAS	1	1	0.054	FALSE	462	80	0	856	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-ND4--MT-ND4L	4	1	MT-ND4	1019	chrM:10778:+	MT-ND4L	5617	chrM:10708:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0.009	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1_PANCREAS	1	1	0.045	FALSE	344	821	44	306	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-ND4--MT-ND4L	4	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0.009	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1_PANCREAS	1	1	0.045	FALSE	344	821	44	306	0	FALSE	ACH-000164
PANC1_PANCREAS	MTAP--DMRTA1	4	1	MTAP	7556	chr9:21818201:+	DMRTA1	25194	chr9:22451201:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.45	0.036	0.009	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	PANC1_PANCREAS	0.45	1	0.045	TRUE	0	1	0	2	0	TRUE	ACH-000164
PANC1_PANCREAS	ANTXR2--PRKG2	4	0	ANTXR2	19212	chr4:80929675:-	PRKG2	54609	chr4:82013606:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	ANTXR2->anthrax_toxin_receptor_2,chr4:80822303-81046608:-,PRKG2->chr4:82009837-82136218:-,protein_kinase,_cGMP-dependent,_type_II	PANC1_PANCREAS	1	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	DOT1L--CSNK1G2	4	0	DOT1L	1117	chr19:2164264:+	CSNK1G2	44051	chr19:1969507:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+,CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+	PANC1_PANCREAS	1	1	0.036	TRUE	1	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	MT-ND4--MT-ND4L	4	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1_PANCREAS	1	1	0.036	FALSE	344	821	44	306	0	FALSE	ACH-000164
PANC1_PANCREAS	MTAP--RP11-399D6.2	4	0	MTAP	7556	chr9:21818201:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	PANC1_PANCREAS	1	1	0.036	TRUE	0	0	0	2	0	TRUE	ACH-000164
PANC1_PANCREAS	OAZ1--KLF16	4	0	OAZ1	1259	chr19:2269743:+	KLF16	9779	chr19:1854759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Whole_Blood=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,KLF16->Kruppel-like_factor_16,chr19:1852399-1863567:-	PANC1_PANCREAS	1	1	0.036	TRUE	6	0	0	3	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-ND6--MT-TE	3	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.027	0.027	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC1_PANCREAS	1	1	0.054	FALSE	499	1288	110	792	0	FALSE	ACH-000164
PANC1_PANCREAS	PREP--RP11-553A21.3	3	3	PREP	8016	chr6:105800847:-	RP11-553A21.3	22420	chr6:74405298:-	ONLY_REF_SPLICE	YES	67	1	0.08	0.86	0.027	0.027	PREP->chr6:105725440-105850959:-,prolyl_endopeptidase,RP11-553A21.3->chr6:74403626-74405854:-	PANC1_PANCREAS	0.08	0.86	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	AL589743.1--RP11-536C10.17	3	1	AL589743.1	5091	chr14:19656224:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	137	0	0.03	1	0.027	0.009	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	PANC1_PANCREAS	0.03	1	0.036	TRUE	0	4	0	3	4	TRUE	ACH-000164
PANC1_PANCREAS	AL589743.1--RP11-536C10.17	3	1	AL589743.1	3600	chr14:19654004:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	126	0	0.03	1	0.027	0.009	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	PANC1_PANCREAS	0.03	1	0.036	TRUE	0	1	0	2	1	FALSE	ACH-000164
PANC1_PANCREAS	AP000525.9--LA16c-60G3.6	3	1	AP000525.9	3590	chr22:16189032:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	72	0	0.05	1	0.027	0.009	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	PANC1_PANCREAS	0.05	1	0.036	TRUE	0	0	0	3	0	TRUE	ACH-000164
PANC1_PANCREAS	AP000525.9--LA16c-60G3.6	3	1	AP000525.9	5082	chr22:16186811:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	62	0	0.06	1	0.027	0.009	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	PANC1_PANCREAS	0.06	1	0.036	TRUE	0	3	0	6	3	TRUE	ACH-000164
PANC1_PANCREAS	HMOX1--MT-ND4L	3	1	HMOX1	7061	chr22:35789509:+	MT-ND4L	10915	chrM:10625:+	INCL_NON_REF_SPLICE	YES	212	2686	0.02	0	0.027	0.009	HMOX1->chr22:35776354-35790207:+,heme_oxygenase_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1_PANCREAS	0	0.02	0.036	FALSE	0	0	0	4	0	FALSE	ACH-000164
PANC1_PANCREAS	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.88	0.88	0.018	0.045	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PANC1_PANCREAS	0.88	0.88	0.063	FALSE	467	2173	244	435	0	FALSE	ACH-000164
PANC1_PANCREAS	ZFP36--MT-ND4L	3	1	ZFP36	3231	chr19:39899683:+	MT-ND4L	6602	chrM:10471:+	INCL_NON_REF_SPLICE	YES	464	0	0.01	1	0.027	0.009	ZFP36->Oncogene{Bushman},ZFP36_ring_finger_protein,chr19:39897453-39900052:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC1_PANCREAS	0.01	1	0.036	FALSE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	ANP32B--APP	3	0	ANP32B	8117	chr9:100773588:+	APP	24340	chr21:27394341:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	PANC1_PANCREAS	1	1	0.027	TRUE	0	0	0	7	0	TRUE	ACH-000164
PANC1_PANCREAS	GLCCI1--JAZF1	3	0	GLCCI1	10957	chr7:8110761:+	JAZF1	33260	chr7:27880486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GLCCI1->chr7:8008425-8133902:+,glucocorticoid_induced_1,JAZF1->JAZF_zinc_finger_1,Oncogene{Bushman},chr7:27870192-28220362:-	PANC1_PANCREAS	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	GPR126--VTA1	3	0	GPR126	2987	chr6:142630781:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	PANC1_PANCREAS	1	1	0.027	TRUE	0	2	0	15	1	TRUE	ACH-000164
PANC1_PANCREAS	HSPBP1--GRK5	3	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.027	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	PANC1_PANCREAS	1	1	0.027	TRUE	1	39	0	134	39	FALSE	ACH-000164
PANC1_PANCREAS	HSPBP1--GRK5	3	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.027	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	PANC1_PANCREAS	1	1	0.027	TRUE	1	39	0	134	39	FALSE	ACH-000164
PANC1_PANCREAS	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.027	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC1_PANCREAS	1	1	0.027	FALSE	189	492	56	216	0	FALSE	ACH-000164
PANC1_PANCREAS	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.027	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC1_PANCREAS	1	1	0.027	FALSE	462	80	0	856	0	FALSE	ACH-000164
PANC1_PANCREAS	NCOR2--UBC	3	0	NCOR2	2329	chr12:125020111:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	PANC1_PANCREAS	1	1	0.027	TRUE	48	117	12	14	0	FALSE	ACH-000164
PANC1_PANCREAS	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.027	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PANC1_PANCREAS	1	1	0.027	TRUE	0	0	0	434	0	FALSE	ACH-000164
PANC1_PANCREAS	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC1_PANCREAS	1	1	0.027	FALSE	25	145	6	90	0	FALSE	ACH-000164
PANC1_PANCREAS	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PANC1_PANCREAS	1	1	0.027	TRUE	64	13	3	59	0	FALSE	ACH-000164
PANC1_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.009	0.072	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PANC1_PANCREAS	1	1	0.081	FALSE	275	511	55	178	0	FALSE	ACH-000164
PANC1_PANCREAS	SETD8--CDK2AP1	3	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	PANC1_PANCREAS	1	1	0.027	TRUE	0	0	0	18	0	TRUE	ACH-000164
PANC1_PANCREAS	CD44--PDHX	2	2	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	2507	124	0	0.03	0.018	0.018	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	PANC1_PANCREAS	0	0.03	0.036	FALSE	0	20	0	35	2	FALSE	ACH-000164
PANC1_PANCREAS	CD44--PDHX	2	2	CD44	5271	chr11:35208447:+	PDHX	38371	chr11:34991686:+	ONLY_REF_SPLICE	YES	2398	181	0	0.02	0.018	0.018	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	PANC1_PANCREAS	0	0.02	0.036	FALSE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	CD44--PDHX	2	2	CD44	1501	chr11:35160917:+	PDHX	39859	chr11:34999671:+	ONLY_REF_SPLICE	YES	2601	103	0	0.04	0.018	0.018	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	PANC1_PANCREAS	0	0.04	0.036	FALSE	0	0	0	3	0	FALSE	ACH-000164
PANC1_PANCREAS	ACTN4--C19orf47	1	5	ACTN4	1259	chr19:39138547:+	C19orf47	32711	chr19:40838550:-	ONLY_REF_SPLICE	NO	3280	25	0	0.19	0.009	0.045	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,C19orf47->chr19:40825443-40854434:-,chromosome_19_open_reading_frame_47	PANC1_PANCREAS	0	0.19	0.054	FALSE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	C7orf50--MAD1L1	2	1	C7orf50	3078	chr7:1166893:-	MAD1L1	43478	chr7:2054277:-	ONLY_REF_SPLICE	YES	239	59	0.01	0.05	0.018	0.009	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	PANC1_PANCREAS	0.01	0.05	0.027	FALSE	0	0	0	2	0	FALSE	ACH-000164
PANC1_PANCREAS	SH2B3--GRAMD4	2	1	SH2B3	3089	chr12:111856681:+	GRAMD4	29295	chr22:47068740:+	ONLY_REF_SPLICE	YES	24	15	0.11	0.17	0.018	0.009	SH2B3->SH2B_adaptor_protein_3,chr12:111843752-111889427:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	PANC1_PANCREAS	0.11	0.17	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	AC005592.2--ARHGAP26	2	0	AC005592.2	3506	chr5:141733148:+	ARHGAP26	36391	chr5:142416761:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	NEIGHBORS[98383],AC005592.2->chr5:141704858-142051566:+,ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+	PANC1_PANCREAS	1	1	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	APIP--CD44	2	0	APIP	1272	chr11:34937775:-	CD44	36540	chr11:35236399:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	APIP->APAF1_interacting_protein,chr11:34874641-34938046:-,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	ATXN1--TCP1	2	0	ATXN1	3053	chr6:16753464:-	TCP1	40505	chr6:160201119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	ATXN1->ataxin_1,chr6:16299343-16761722:-,TCP1->chr6:160199530-160210781:-,t-complex_1	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	C1orf63--PSMD2	2	0	C1orf63	8720	chr1:25594231:-	PSMD2	29192	chr3:184026237:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,PSMD2->Oncogene{Bushman},chr3:184016497-184026842:+,proteasome_26S_subunit,_non-ATPase_2	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	C7orf50--PRKAR1B	2	0	C7orf50	3078	chr7:1166893:-	PRKAR1B	28024	chr7:647089:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	CNDP2--ZADH2	2	0	CNDP2	1616	chr18:72163666:+	ZADH2	27147	chr18:72914295:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	CNDP2->CNDP_dipeptidase_2_(metallopeptidase_M20_family),chr18:72163051-72188366:+,ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	CYR61--BCL10	2	0	CYR61	2524	chr1:86047967:+	BCL10	10287	chr1:85733665:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	CYR61->Oncogene{Bushman},chr1:86046444-86049645:+,cysteine_rich_angiogenic_inducer_61,BCL10->B-cell_CLL/lymphoma_10,Oncogene{Bushman},chr1:85731931-85742773:-	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	GMDS-AS1--SAP130	2	0	GMDS-AS1	2273	chr6:2249160:+	SAP130	47239	chr2:128735663:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	GMDS-AS1->GMDS_antisense_RNA_1_(head_to_head),chr6:2245982-2482256:+,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	GRAMD4--CUX2	2	0	GRAMD4	18768	chr22:47071449:+	CUX2	33513	chr12:111729222:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+,CUX2->chr12:111471828-111788358:+,cut_like_homeobox_2	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	HNRNPA2B1--TAX1BP1	2	0	HNRNPA2B1	1958	chr7:26240192:-	TAX1BP1	32122	chr7:27855968:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	PWWP2B--INPP5A	2	0	PWWP2B	1184	chr10:134210855:+	INPP5A	21634	chr10:134579277:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	GTEx_FI:{Skin=[count:2=pct:0.6]},PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,INPP5A->chr10:134351324-134596979:+,inositol_polyphosphate-5-phosphatase_A	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	PANC1_PANCREAS	1	1	0.018	FALSE	46	201	11	112	0	FALSE	ACH-000164
PANC1_PANCREAS	SH2B3--CUX2	2	0	SH2B3	3089	chr12:111856681:+	CUX2	21789	chr12:111729222:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	LOCAL_REARRANGEMENT:+:[55394],SH2B3->SH2B_adaptor_protein_3,chr12:111843752-111889427:+,CUX2->chr12:111471828-111788358:+,cut_like_homeobox_2	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	SLC16A5--GNL3	2	0	SLC16A5	1318	chr17:73084139:+	GNL3	18158	chr3:52723090:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	SLC16A5->chr17:73083822-73102257:+,solute_carrier_family_16_member_5,GNL3->G_protein_nucleolar_3,chr3:52715172-52728508:+	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	TNS3--CTBP1	2	0	TNS3	1132	chr7:47622025:-	CTBP1	51325	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	TNS3->chr7:47314752-47622156:-,tensin_3,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	PANC1_PANCREAS	1	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000164
PANC1_PANCREAS	UVSSA--CTBP1	2	0	UVSSA	7499	chr4:1349033:+	CTBP1	25235	chr4:1232125:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.018	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	PANC1_PANCREAS	1	1	0.018	TRUE	2	0	1	2	0	FALSE	ACH-000164
PANC1_PANCREAS	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	1	0	0.8	1	0.009	0.027	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC1_PANCREAS	0.8	1	0.036	FALSE	164	806	69	479	0	FALSE	ACH-000164
PANC1_PANCREAS	BAIAP2--SLC38A10	1	2	BAIAP2	6850	chr17:79031767:+	SLC38A10	36576	chr17:79258695:-	ONLY_REF_SPLICE	YES	213	178	0.01	0.02	0.009	0.018	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},{Klijn_CCL:Ovary=1},BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+,SLC38A10->chr17:79218800-79269347:-,solute_carrier_family_38_member_10	PANC1_PANCREAS	0.01	0.02	0.027	FALSE	0	0	0	2	0	FALSE	ACH-000164
PANC1_PANCREAS	CD44--PDHX	1	2	CD44	6502	chr11:35211612:+	PDHX	40918	chr11:35006117:+	ONLY_REF_SPLICE	YES	2507	91	0	0.03	0.009	0.018	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	PANC1_PANCREAS	0	0.03	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	CD44--PDHX	1	2	CD44	19327	chr11:35236461:+	PDHX	36097	chr11:34981967:+	ONLY_REF_SPLICE	YES	3015	93	0	0.03	0.009	0.018	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	PANC1_PANCREAS	0	0.03	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	CD44--PDHX	1	2	CD44	1501	chr11:35160917:+	PDHX	40918	chr11:35006117:+	ONLY_REF_SPLICE	YES	2601	91	0	0.03	0.009	0.018	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	PANC1_PANCREAS	0	0.03	0.027	FALSE	0	2	0	7	0	FALSE	ACH-000164
PANC1_PANCREAS	ACTN4--AKT2	1	1	ACTN4	1259	chr19:39138547:+	AKT2	37348	chr19:40762961:-	ONLY_REF_SPLICE	NO	3280	2259	0	0	0.009	0.009	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	PANC1_PANCREAS	0	0	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	BAIAP2--SLC38A10	1	1	BAIAP2	13797	chr17:79060380:+	SLC38A10	45172	chr17:79244824:-	ONLY_REF_SPLICE	YES	131	243	0.02	0.01	0.009	0.009	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},{Klijn_CCL:Ovary=1},BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+,SLC38A10->chr17:79218800-79269347:-,solute_carrier_family_38_member_10	PANC1_PANCREAS	0.01	0.02	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	C7orf50--MAD1L1	1	1	C7orf50	3078	chr7:1166893:-	MAD1L1	42333	chr7:2108973:-	ONLY_REF_SPLICE	YES	239	57	0.01	0.03	0.009	0.009	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	PANC1_PANCREAS	0.01	0.03	0.018	FALSE	0	1	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	C7orf50--MAD1L1	1	1	C7orf50	3078	chr7:1166893:-	MAD1L1	50779	chr7:1938026:-	ONLY_REF_SPLICE	YES	239	59	0.01	0.03	0.009	0.009	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	PANC1_PANCREAS	0.01	0.03	0.018	FALSE	0	1	0	6	0	FALSE	ACH-000164
PANC1_PANCREAS	CHCHD3--EXOC4	1	1	CHCHD3	5725	chr7:132709306:-	EXOC4	27342	chr7:133041084:+	ONLY_REF_SPLICE	YES	275	57	0.01	0.03	0.009	0.009	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	PANC1_PANCREAS	0.01	0.03	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	COPZ1--AP1M1	1	1	COPZ1	5105	chr12:54736071:+	AP1M1	18093	chr19:16314270:+	ONLY_REF_SPLICE	YES	443	219	0	0.01	0.009	0.009	COPZ1->chr12:54694986-54745633:+,coatomer_protein_complex_subunit_zeta_1,AP1M1->adaptor_related_protein_complex_1_mu_1_subunit,chr19:16308389-16346160:+	PANC1_PANCREAS	0	0.01	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	HOXA3--GNAS	1	1	HOXA3	5822	chr7:27162178:-	GNAS	32143	chr20:57470667:+	ONLY_REF_SPLICE	YES	9	495	0.18	0	0.009	0.009	HOXA3->Oncogene{Bushman},chr7:27145803-27192200:-,homeobox_A3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	PANC1_PANCREAS	0	0.18	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	HP1BP3--EIF4G3	1	1	HP1BP3	1129	chr1:21113688:-	EIF4G3	30977	chr1:21377487:-	ONLY_REF_SPLICE	YES	71	55	0.03	0.04	0.009	0.009	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	PANC1_PANCREAS	0.03	0.04	0.018	TRUE	0	0	0	3	0	FALSE	ACH-000164
PANC1_PANCREAS	NSD1--CANX	1	1	NSD1	4006	chr5:176563031:+	CANX	50839	chr5:179132680:+	ONLY_REF_SPLICE	YES	41	768	0.05	0	0.009	0.009	NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,CANX->calnexin,chr5:179105629-179157926:+	PANC1_PANCREAS	0	0.05	0.018	FALSE	0	0	0	2	0	FALSE	ACH-000164
PANC1_PANCREAS	RP11-838N2.5--MYL12B	1	1	RP11-838N2.5	1115	chr18:3284257:+	MYL12B	8095	chr18:3272882:+	ONLY_REF_SPLICE	YES	8	232	0.2	0.01	0.009	0.009	LOCAL_REARRANGEMENT:+:[5861],RP11-838N2.5->chr18:3284143-3327290:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	PANC1_PANCREAS	0.01	0.2	0.018	FALSE	0	0	0	3	0	FALSE	ACH-000164
PANC1_PANCREAS	SH2B3--GRAMD4	1	1	SH2B3	3089	chr12:111856681:+	GRAMD4	30122	chr22:47069567:+	ONLY_REF_SPLICE	YES	24	24	0.08	0.08	0.009	0.009	SH2B3->SH2B_adaptor_protein_3,chr12:111843752-111889427:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	PANC1_PANCREAS	0.08	0.08	0.018	TRUE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	SNX8--MAD1L1	1	1	SNX8	15696	chr7:2296509:-	MAD1L1	50754	chr7:2041756:-	ONLY_REF_SPLICE	YES	77	60	0.03	0.03	0.009	0.009	NEIGHBORS[18527],SNX8->chr7:2291405-2393953:-,sorting_nexin_8,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	PANC1_PANCREAS	0.03	0.03	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000164
PANC1_PANCREAS	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.009	0.009	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PANC1_PANCREAS	1	1	0.018	TRUE	62	24	1	171	0	FALSE	ACH-000164
IALM_LUNG	TIMM23B--LINC00843	80	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8415	0.2525	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	IALM_LUNG	1	1	1.094	TRUE	508	994	45	981	0	FALSE	ACH-000672
IALM_LUNG	TIMM23--RP11-464F9.1	53	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5575	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	IALM_LUNG	1	1	0.5575	TRUE	519	3926	326	965	0	FALSE	ACH-000672
IALM_LUNG	IGSF3--GGT1	41	11	IGSF3	13001	chr1:117131316:-	GGT1	26899	chr22:25003921:+	ONLY_REF_SPLICE	YES	1	7	0.98	0.88	0.4313	0.1157	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	IALM_LUNG	0.88	0.98	0.547	TRUE	1	1	0	8	1	TRUE	ACH-000672
IALM_LUNG	MT-TA--MT-TC	42	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4418	0.0316	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IALM_LUNG	1	1	0.4734	FALSE	462	80	0	856	0	FALSE	ACH-000672
IALM_LUNG	PFDN1--CTC-329D1.3	38	0	PFDN1	1081	chr5:139682626:-	CTC-329D1.3	12670	chr5:139728125:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3997	0	LOCAL_REARRANGEMENT:-:[45363],PFDN1->chr5:139624624-139682706:-,prefoldin_subunit_1,CTC-329D1.3->chr5:139728069-139737379:-	IALM_LUNG	1	1	0.3997	TRUE	0	0	0	1	0	TRUE	ACH-000672
IALM_LUNG	PLXDC1--TAF13	34	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3577	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	IALM_LUNG	1	1	0.3577	TRUE	7	10	0	216	0	FALSE	ACH-000672
IALM_LUNG	CALM3--MT-ND4L	24	20	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2546	0	0.02	1	0.2525	0.2104	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IALM_LUNG	0.02	1	0.4629	FALSE	1	1	0	107	0	FALSE	ACH-000672
IALM_LUNG	ABCC4--DDX11L2	22	13	ABCC4	15862	chr13:95829961:-	DDX11L2	42999	chr2:114359006:-	INCL_NON_REF_SPLICE	YES	32	1	0.52	0.97	0.2314	0.1367	ABCC4->ATP_binding_cassette_subfamily_C_member_4,chr13:95672083-95953687:-,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	IALM_LUNG	0.52	0.97	0.3681	TRUE	0	0	0	1	0	TRUE	ACH-000672
IALM_LUNG	PIGU--NCOA6	18	11	PIGU	1151	chr20:33264760:-	NCOA6	44726	chr20:33303169:-	ONLY_REF_SPLICE	YES	84	55	0.26	0.35	0.1893	0.1157	LOCAL_REARRANGEMENT:-:[19812],PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6	IALM_LUNG	0.26	0.35	0.305	TRUE	0	0	0	1	0	TRUE	ACH-000672
IALM_LUNG	AHNAK--EEF1A1	18	1	AHNAK	13146	chr11:62295212:-	EEF1A1	34287	chr6:74229117:-	INCL_NON_REF_SPLICE	YES	714	24554	0.03	0	0.1893	0.0105	GTEx&tcga_normals:7/3694=0.19%,AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	IALM_LUNG	0	0.03	0.1998	TRUE	0	0	0	1	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	18	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1893	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	1	1	0.1893	FALSE	230	198	14	283	0	FALSE	ACH-000672
IALM_LUNG	HSP90AB1--MT-RNR2	14	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	6617	0	0	1	0.1473	0.0105	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IALM_LUNG	0	1	0.1578	FALSE	13	9	0	364	0	FALSE	ACH-000672
IALM_LUNG	HSP90AB1--MT-RNR2	14	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	6665	0	0	1	0.1473	0.0105	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IALM_LUNG	0	1	0.1578	FALSE	13	9	0	364	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	8	20	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	1	0	0.97	1	0.0842	0.2104	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0.97	1	0.2946	FALSE	209	205	15	279	0	FALSE	ACH-000672
IALM_LUNG	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1262	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	IALM_LUNG	1	1	0.1262	TRUE	0	0	0	434	0	FALSE	ACH-000672
IALM_LUNG	TMEM156--MAEA	10	4	TMEM156	1697	chr4:39033846:-	MAEA	29299	chr4:1326545:+	ONLY_REF_SPLICE	YES	851	328	0.02	0.04	0.1052	0.0421	TMEM156->chr4:38968365-39034542:-,transmembrane_protein_156,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	IALM_LUNG	0.02	0.04	0.1473	TRUE	0	0	0	1	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	6	16	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17234	0	0	1	0.0631	0.1683	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	1	0.2314	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	PSAP--GAPDH	7	11	PSAP	10123	chr10:73579538:-	GAPDH	20232	chr12:6646882:+	INCL_NON_REF_SPLICE	NO	4362	35312	0	0	0.0736	0.1157	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	IALM_LUNG	0	0	0.1893	FALSE	0	0	0	4	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	7	10	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17643	13	0	0.57	0.0736	0.1052	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	0.57	0.1788	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	PSAP--GAPDH	7	8	PSAP	8533	chr10:73581668:-	GAPDH	20191	chr12:6646841:+	INCL_NON_REF_SPLICE	YES	4106	36278	0	0	0.0736	0.0842	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	IALM_LUNG	0	0	0.1578	TRUE	0	0	0	8	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	5	15	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	17651	0	0	1	0.0526	0.1578	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	1	0.2104	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	RP11-123O10.4--GRIP1	8	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0842	0.0316	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	IALM_LUNG	1	1	0.1158	FALSE	416	2512	207	587	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	4	18	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	17195	0	0	1	0.0421	0.1893	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	1	0.2314	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	MT-ND6--MT-TE	8	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IALM_LUNG	1	1	0.0842	FALSE	499	1288	110	792	0	FALSE	ACH-000672
IALM_LUNG	C15orf57--CBX3	5	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	87	22	0.15	0.41	0.0526	0.1052	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	IALM_LUNG	0.15	0.41	0.1578	TRUE	267	562	48	632	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	4	14	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	17558	0	0	1	0.0421	0.1473	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	1	0.1894	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	3	18	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	17533	0	0	1	0.0316	0.1893	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	1	0.2209	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	SLC1A5--MT-ND4L	7	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	542	0	0.02	1	0.0736	0.021	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IALM_LUNG	0.02	1	0.0946	FALSE	0	0	0	189	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	3	17	MT-ND4	1967	chrM:11726:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	16431	0	0	1	0.0316	0.1788	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	1	0.2104	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	MT-ND5--MT-ATP8	7	1	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4825	61	0	0.12	0.0736	0.0105	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	0.12	0.0841	FALSE	43	37	8	105	0	FALSE	ACH-000672
IALM_LUNG	C15orf57--CBX3	4	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	89	21	0.15	0.43	0.0421	0.1262	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	IALM_LUNG	0.15	0.43	0.1683	TRUE	267	562	48	632	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	7	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0736	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	1	1	0.0736	FALSE	230	193	14	283	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	3	16	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	17581	0	0	1	0.0316	0.1683	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	1	0.1999	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	PSAP--GAPDH	5	8	PSAP	8522	chr10:73581679:-	GAPDH	20180	chr12:6646830:+	INCL_NON_REF_SPLICE	YES	4091	35435	0	0	0.0526	0.0842	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	IALM_LUNG	0	0	0.1368	TRUE	0	0	0	8	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	3	15	MT-ND4	1788	chrM:11547:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	17576	0	0	1	0.0316	0.1578	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	1	0.1894	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0631	0.0316	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IALM_LUNG	1	1	0.0947	FALSE	462	80	0	856	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	4	10	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	15308	184	0	0.07	0.0421	0.1052	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	0.07	0.1473	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	5	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18553	0	0	1	0.0526	0.0526	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	1	0.1052	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0631	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IALM_LUNG	1	1	0.0631	FALSE	499	1288	110	792	0	FALSE	ACH-000672
IALM_LUNG	IGSF3--GGT1	3	11	IGSF3	13000	chr1:117131317:-	GGT1	26901	chr22:25003923:+	INCL_NON_REF_SPLICE	YES	1	7	0.93	0.67	0.0316	0.1157	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	IALM_LUNG	0.67	0.93	0.1473	TRUE	1	1	0	8	1	TRUE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	3	11	MT-ND4	2326	chrM:12085:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	95	1	0.13	0.0316	0.1157	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0.13	1	0.1473	FALSE	209	205	15	279	0	FALSE	ACH-000672
IALM_LUNG	RPSAP52--HMGA2	5	3	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	9	650	0.47	0.01	0.0526	0.0316	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	IALM_LUNG	0.01	0.47	0.0842	FALSE	0	59	0	125	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15308	61	0	0.18	0.0316	0.1052	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	0.18	0.1368	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	4	6	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	19249	0	0	1	0.0421	0.0631	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	1	0.1052	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	4	5	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	20688	751	0	0.01	0.0421	0.0526	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	0.01	0.0947	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	3	9	MT-ND4	1494	chrM:11253:+	MT-ATP8	5431	chrM:8418:+	INCL_NON_REF_SPLICE	YES	18533	0	0	1	0.0316	0.0947	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	1	0.1263	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	IALM_LUNG	1	1	0.0526	FALSE	292	1546	117	613	0	FALSE	ACH-000672
IALM_LUNG	MT-TA--MT-TC	4	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0.0316	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IALM_LUNG	1	1	0.0737	FALSE	462	80	0	856	0	FALSE	ACH-000672
IALM_LUNG	ALDOA--GAPDH	4	2	ALDOA	8888	chr16:30078660:+	GAPDH	18408	chr12:6646518:+	INCL_NON_REF_SPLICE	YES	11433	35681	0	0	0.0421	0.021	GTEx&tcga_normals:26/3694=0.70%,GTEx:0.54%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	IALM_LUNG	0	0	0.0631	FALSE	0	0	0	1	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1469	chrM:11228:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	18798	0	0	1	0.0316	0.0631	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	1	0.0947	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0421	0.021	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	IALM_LUNG	0.86	1	0.0631	FALSE	515	4851	409	746	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	4	1	MT-ND4	1255	chrM:11014:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	13706	95	0	0.05	0.0421	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	0.05	0.0526	FALSE	231	204	14	283	0	FALSE	ACH-000672
IALM_LUNG	MT-ND5--MT-ATP8	3	5	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.0526	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	1	1	0.0842	FALSE	43	37	8	105	0	FALSE	ACH-000672
IALM_LUNG	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	128	1	0.04	0.0421	0.0105	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	IALM_LUNG	0.04	1	0.0526	TRUE	465	1949	224	605	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1477	chrM:11236:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18589	13	0	0.35	0.0316	0.0421	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	0.35	0.0737	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	MT-ND5--MT-ATP8	3	4	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.0421	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	1	1	0.0737	FALSE	43	37	8	105	0	FALSE	ACH-000672
IALM_LUNG	MT-ND6--MT-TE	3	4	MT-ND6	1199	chrM:14475:-	MT-TE	4530	chrM:14738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.0421	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IALM_LUNG	1	1	0.0737	FALSE	499	1288	110	792	0	FALSE	ACH-000672
IALM_LUNG	VIM--RPS18	4	0	VIM	2101	chr10:17271358:+	RPS18	12272	chr6:33239854:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},VIM->chr10:17270258-17279592:+,vimentin,RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18	IALM_LUNG	1	1	0.0421	TRUE	0	0	0	2	0	TRUE	ACH-000672
IALM_LUNG	MT-ND5--MT-ATP8	3	3	MT-ND5	2518	chrM:13854:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2897	0	0	1	0.0316	0.0316	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	1	0.0632	FALSE	43	37	8	105	0	FALSE	ACH-000672
IALM_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	17296	1782	0	0	0.0316	0.021	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	0	0.0526	FALSE	231	217	16	283	0	FALSE	ACH-000672
IALM_LUNG	MT-ND5--MT-ATP8	3	2	MT-ND5	1795	chrM:13131:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	NO	3418	1	0	0.83	0.0316	0.021	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	0.83	0.0526	FALSE	43	37	8	105	0	FALSE	ACH-000672
IALM_LUNG	MT-ND5--MT-ATP8	3	2	MT-ND5	1735	chrM:13071:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3206	13	0	0.28	0.0316	0.021	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IALM_LUNG	0	0.28	0.0526	FALSE	43	37	8	105	0	FALSE	ACH-000672
IALM_LUNG	MT-ND6--MT-TE	3	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.021	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IALM_LUNG	1	1	0.0526	FALSE	499	1288	110	792	0	FALSE	ACH-000672
IALM_LUNG	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.021	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IALM_LUNG	1	1	0.0526	FALSE	462	80	0	856	0	FALSE	ACH-000672
IALM_LUNG	RP11-59N23.1--CMAS	3	2	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	13	872	0.28	0.01	0.0316	0.021	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	IALM_LUNG	0.01	0.28	0.0526	FALSE	21	102	17	28	0	FALSE	ACH-000672
IALM_LUNG	AC093642.5--RP4-717I23.3	2	3	AC093642.5	2310	chr2:243037178:+	RP4-717I23.3	16904	chr1:93806067:-	ONLY_REF_SPLICE	YES	7	15	0.42	0.25	0.021	0.0316	AC093642.5->chr2:243030784-243102304:+,RP4-717I23.3->chr1:93727743-93811582:-	IALM_LUNG	0.25	0.42	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000672
IALM_LUNG	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.021	0.0316	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	IALM_LUNG	0.83	1	0.0526	FALSE	407	2205	196	549	0	FALSE	ACH-000672
IALM_LUNG	CPQ--SDC2	2	1	CPQ	9826	chr8:97892233:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	61	675	0.05	0	0.021	0.0105	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	IALM_LUNG	0	0.05	0.0315	FALSE	2	35	6	7	0	FALSE	ACH-000672
IALM_LUNG	C17orf76-AS1--CTD-2354A18.1	2	0	C17orf76-AS1	1593	chr17:16342728:+	CTD-2354A18.1	16095	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	C17orf76-AS1->chr17:16342136-16381992:+,CTD-2354A18.1->chr18:70992176-71017113:+	IALM_LUNG	1	1	0.021	TRUE	0	0	0	3	0	TRUE	ACH-000672
IALM_LUNG	C17orf76-AS1--THOC7	2	0	C17orf76-AS1	1593	chr17:16342728:+	THOC7	16858	chr3:63825449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	C17orf76-AS1->chr17:16342136-16381992:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	IALM_LUNG	1	1	0.021	TRUE	0	1	0	1	0	TRUE	ACH-000672
IALM_LUNG	CTC-786C10.1--SPSB2	2	0	CTC-786C10.1	1532	chr16:85205413:+	SPSB2	10971	chr12:6982150:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	CTC-786C10.1->chr16:85204882-85218969:+,SPSB2->chr12:6980099-6998522:-,splA/ryanodine_receptor_domain_and_SOCS_box_containing_2	IALM_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000672
IALM_LUNG	FNTA--TMEM62	2	0	FNTA	2593	chr8:42911689:+	TMEM62	28455	chr15:43440953:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	FNTA->chr8:42889337-42940931:+,farnesyltransferase,_CAAX_box,_alpha,TMEM62->chr15:43415477-43477344:+,transmembrane_protein_62	IALM_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000672
IALM_LUNG	KCNQ5-IT1--KCNQ5	2	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	IALM_LUNG	1	1	0.021	FALSE	1	11	0	34	0	FALSE	ACH-000672
IALM_LUNG	PBX3--MAPKAP1	2	0	PBX3	2279	chr9:128510902:+	MAPKAP1	23367	chr9:128434922:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	IALM_LUNG	1	1	0.021	TRUE	0	1	0	3	0	TRUE	ACH-000672
IALM_LUNG	PFDN1--HBEGF	2	0	PFDN1	1081	chr5:139682626:-	HBEGF	11704	chr5:139725669:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	LOCAL_REARRANGEMENT:-:[29722],PFDN1->chr5:139624624-139682706:-,prefoldin_subunit_1,HBEGF->chr5:139712428-139726216:-,heparin_binding_EGF_like_growth_factor	IALM_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000672
IALM_LUNG	POLA1--MTBP	2	0	POLA1	31877	chrX:24839700:+	MTBP	51149	chr8:121471455:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit,MTBP->MDM2_binding_protein,chr8:121457640-121554373:+	IALM_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000672
IALM_LUNG	PRR16--CTD-2334D19.1	2	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	IALM_LUNG	1	1	0.021	FALSE	56	216	12	147	0	FALSE	ACH-000672
IALM_LUNG	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0105	0.0421	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	IALM_LUNG	1	1	0.0526	FALSE	76	45	6	15	0	FALSE	ACH-000672
IALM_LUNG	SKIV2L2--CTD-3185P2.1	2	0	SKIV2L2	24057	chr5:54696249:+	CTD-3185P2.1	36533	chr15:66783055:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	SKIV2L2->Ski2_like_RNA_helicase_2,chr5:54603588-54721409:+,CTD-3185P2.1->chr15:66782086-66784447:-	IALM_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000672
IALM_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0105	0.0316	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	IALM_LUNG	0.8	1	0.0421	FALSE	275	511	55	178	0	FALSE	ACH-000672
IALM_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0105	0.0316	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	IALM_LUNG	1	1	0.0421	FALSE	467	2173	244	435	0	FALSE	ACH-000672
IALM_LUNG	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	72	1	0.04	0.0105	0.021	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	IALM_LUNG	0.04	1	0.0315	TRUE	458	1351	185	561	0	FALSE	ACH-000672
IALM_LUNG	ACTR2--RAB1A	1	1	ACTR2	2316	chr2:65467096:+	RAB1A	20283	chr2:65331940:-	ONLY_REF_SPLICE	YES	1332	826	0	0	0.0105	0.0105	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[97647],ACTR2->ARP2_actin-related_protein_2_homolog_(yeast),chr2:65454887-65498387:+,RAB1A->Oncogene{Bushman},RAB1A,_member_RAS_oncogene_family,chr2:65297835-65357240:-	IALM_LUNG	0	0	0.021	FALSE	0	0	0	2	0	FALSE	ACH-000672
IALM_LUNG	CBX5--SEPT2	1	1	CBX5	4174	chr12:54651298:-	SEPT2	37025	chr2:242287549:+	ONLY_REF_SPLICE	YES	92	858	0.02	0	0.0105	0.0105	CBX5->chr12:54624724-54673886:-,chromobox_5,SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2	IALM_LUNG	0	0.02	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000672
IALM_LUNG	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	201	1	0.01	0.0105	0.0105	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	IALM_LUNG	0.01	1	0.021	FALSE	347	1186	183	220	0	FALSE	ACH-000672
IALM_LUNG	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	40	0	0.05	1	0.0105	0.0105	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	IALM_LUNG	0.05	1	0.021	FALSE	164	806	69	479	0	FALSE	ACH-000672
IALM_LUNG	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0105	0.0105	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	IALM_LUNG	1	1	0.021	FALSE	93	270	15	244	0	FALSE	ACH-000672
SNU8_OVARY	MT-TA--MT-TN	133	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.17	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU8_OVARY	1	1	1.17	FALSE	369	2501	205	193	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TC	98	17	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8621	0.1495	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU8_OVARY	1	1	1.0116	FALSE	462	80	0	856	0	FALSE	ACH-000460
SNU8_OVARY	TIMM23B--LINC00843	88	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7741	0.1232	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU8_OVARY	1	1	0.8973	TRUE	508	994	45	981	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND6--MT-TE	66	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5806	0.0352	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU8_OVARY	1	1	0.6158	FALSE	499	1288	110	792	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	8	224	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	34	0	0.87	1	0.0704	1.9705	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.87	1	2.0409	FALSE	344	827	44	306	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	24	154	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	6870	0	0.03	1	0.2111	1.3547	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.03	1	1.5658	FALSE	344	827	44	306	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	7	219	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	9	1	0.96	1	0.0616	1.9265	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.96	1	1.9881	FALSE	344	826	44	306	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	3	231	MT-ND4	2212	chrM:11971:+	MT-ND4L	5529	chrM:10620:+	INCL_NON_REF_SPLICE	YES	5882	1	0.04	1	0.0264	2.0321	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.04	1	2.0585	FALSE	303	762	40	299	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	4	222	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	13	0	0.95	1	0.0352	1.9529	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.95	1	1.9881	FALSE	344	826	44	306	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	4	221	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	10	1	0.96	1	0.0352	1.9441	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.96	1	1.9793	FALSE	344	826	44	306	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	3	223	MT-ND4	1222	chrM:10981:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	31	0	0.88	1	0.0264	1.9617	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.88	1	1.9881	FALSE	344	827	44	306	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	3	223	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	13	0	0.95	1	0.0264	1.9617	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.95	1	1.9881	FALSE	344	826	44	306	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	3	220	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	10	0	0.96	1	0.0264	1.9353	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.96	1	1.9617	FALSE	344	826	44	306	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TN	30	97	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2639	0.8533	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU8_OVARY	1	1	1.1172	FALSE	369	2501	205	193	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	10	168	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	1	0.97	0.99	0.088	1.4779	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.97	0.99	1.5659	FALSE	344	821	44	306	0	FALSE	ACH-000460
SNU8_OVARY	TIMM23--RP11-464F9.1	44	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	158	3	0.22	0.94	0.3871	0.0088	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU8_OVARY	0.22	0.94	0.3959	TRUE	519	3926	326	965	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	3	129	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	12	0	0.92	1	0.0264	1.1348	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.92	1	1.1612	FALSE	344	826	44	306	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND6--MT-TE	31	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.2727	0.1408	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU8_OVARY	0.94	1	0.4135	FALSE	499	1288	110	792	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	32	10	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5030	9	0.01	0.82	0.2815	0.088	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0.01	0.82	0.3695	FALSE	43	37	8	105	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	26	15	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2	1	0.95	0.98	0.2287	0.132	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0.95	0.98	0.3607	FALSE	43	37	8	105	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TN	22	29	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1935	0.2551	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU8_OVARY	1	1	0.4486	FALSE	369	2501	205	193	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TN	29	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2551	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU8_OVARY	1	1	0.2551	FALSE	369	2501	205	193	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TN	17	47	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1495	0.4135	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU8_OVARY	1	1	0.563	FALSE	369	2501	205	193	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TN	9	68	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0792	0.5982	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU8_OVARY	1	1	0.6774	FALSE	369	2501	205	193	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	3	85	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	8	0	0.92	1	0.0264	0.7477	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.92	1	0.7741	FALSE	344	826	44	306	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND6--MT-TE	22	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1935	0.0528	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU8_OVARY	1	1	0.2463	FALSE	499	1288	110	792	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	21	9	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6310	88	0	0.25	0.1847	0.0792	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0	0.25	0.2639	FALSE	43	37	8	105	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TC	19	14	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1671	0.1232	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU8_OVARY	1	1	0.2903	FALSE	462	80	0	856	0	FALSE	ACH-000460
SNU8_OVARY	RP11-123O10.4--GRIP1	22	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1935	0.0088	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU8_OVARY	1	1	0.2023	FALSE	416	2512	207	587	0	FALSE	ACH-000460
SNU8_OVARY	USP54--SYNPO2L	21	0	USP54	1017	chr10:75385695:-	SYNPO2L	42013	chr10:75414038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1847	0	LOCAL_REARRANGEMENT:-:[18928],USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54,SYNPO2L->chr10:75404639-75423561:-,synaptopodin_2_like	SNU8_OVARY	1	1	0.1847	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	ZNF654--HMGB2	21	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1847	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU8_OVARY	1	1	0.1847	TRUE	0	0	0	518	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND3--MT-ATP8	20	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1759	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	1	1	0.1759	FALSE	351	233	23	137	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	3	65	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0264	0.5718	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.97	1	0.5982	FALSE	344	821	44	306	0	FALSE	ACH-000460
SNU8_OVARY	MT-CO2--MT-ND2	18	2	MT-CO2	1240	chrM:7825:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	18885	134	0	0.13	0.1583	0.0176	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU8_OVARY	0	0.13	0.1759	FALSE	105	46	5	21	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND6--MT-TE	10	26	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.088	0.2287	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU8_OVARY	1	1	0.3167	FALSE	499	1288	110	792	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	4	45	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	29	0	0.63	1	0.0352	0.3959	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.63	1	0.4311	FALSE	344	826	44	306	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	8	26	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	33	0	0.51	1	0.0704	0.2287	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.51	1	0.2991	FALSE	344	826	44	306	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TN	3	43	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0.3783	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU8_OVARY	1	1	0.4047	FALSE	369	2501	205	193	0	FALSE	ACH-000460
SNU8_OVARY	FAM102A--PTGES2	12	4	FAM102A	1522	chr9:130742271:-	PTGES2	19113	chr9:130887720:-	ONLY_REF_SPLICE	YES	16	72	0.5	0.18	0.1056	0.0352	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,PTGES2->chr9:130882972-130890741:-,prostaglandin_E_synthase_2	SNU8_OVARY	0.18	0.5	0.1408	TRUE	0	2	0	1	1	TRUE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	4	35	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.0352	0.3079	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.91	1	0.3431	FALSE	344	821	44	306	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND6--MT-TE	6	26	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0528	0.2287	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU8_OVARY	0.91	1	0.2815	FALSE	499	1288	110	792	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	8	16	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.96	0.0704	0.1408	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0.96	1	0.2112	FALSE	43	37	8	105	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TN	3	34	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0.2991	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU8_OVARY	1	1	0.3255	FALSE	369	2501	205	193	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TC	6	21	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0.1847	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU8_OVARY	1	1	0.2375	FALSE	462	80	0	856	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	10	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.93	0.088	0.0264	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.93	1	0.1144	FALSE	344	821	44	306	0	FALSE	ACH-000460
SNU8_OVARY	C15orf57--CBX3	9	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	22	42	0.37	0.24	0.0792	0.0352	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU8_OVARY	0.24	0.37	0.1144	TRUE	267	562	48	632	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	10	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.088	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	1	1	0.088	FALSE	344	821	44	306	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND6--MT-TE	3	26	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0264	0.2287	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU8_OVARY	0.91	1	0.2551	FALSE	499	1288	110	792	0	FALSE	ACH-000460
SNU8_OVARY	C15orf57--CBX3	9	1	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	22	43	0.31	0.19	0.0792	0.0088	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU8_OVARY	0.19	0.31	0.088	TRUE	267	562	48	632	0	FALSE	ACH-000460
SNU8_OVARY	HSPBP1--GRK5	9	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0792	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU8_OVARY	1	1	0.0792	TRUE	1	39	0	134	39	FALSE	ACH-000460
SNU8_OVARY	NRIP1--AF127936.7	9	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0792	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU8_OVARY	1	1	0.0792	FALSE	292	1546	117	613	0	FALSE	ACH-000460
SNU8_OVARY	SLMAP--SLC19A1	8	3	SLMAP	3400	chr3:57743576:+	SLC19A1	55291	chr21:46922883:-	ONLY_REF_SPLICE	YES	19	2	0.37	0.85	0.0704	0.0264	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,SLC19A1->Oncogene{Bushman},chr21:46913486-46964325:-,solute_carrier_family_19_member_1	SNU8_OVARY	0.37	0.85	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	6	10	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	29	0	0.36	1	0.0528	0.088	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.36	1	0.1408	FALSE	344	826	44	306	0	FALSE	ACH-000460
SNU8_OVARY	VPS37B--PITPNM2	7	6	VPS37B	1493	chr12:123380499:-	PITPNM2	20171	chr12:123519232:-	ONLY_REF_SPLICE	YES	135	2	0.09	0.87	0.0616	0.0528	LOCAL_REARRANGEMENT:-:[87036],VPS37B->VPS37B,_ESCRT-I_subunit,chr12:123349882-123380991:-,PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2	SNU8_OVARY	0.09	0.87	0.1144	TRUE	0	1	0	2	1	TRUE	ACH-000460
SNU8_OVARY	IFI27--MT-ND4L	7	4	IFI27	8929	chr14:94582869:+	MT-ND4L	12095	chrM:10471:+	INCL_NON_REF_SPLICE	YES	884	0	0.01	1	0.0616	0.0352	IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.01	1	0.0968	FALSE	0	0	0	13	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TC	3	20	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0.1759	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU8_OVARY	1	1	0.2023	FALSE	462	80	0	856	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TN	8	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0704	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU8_OVARY	1	1	0.0704	FALSE	369	2501	205	193	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	6	6	MT-ND5	1789	chrM:13125:+	MT-ATP8	5881	chrM:8434:+	INCL_NON_REF_SPLICE	YES	4814	0	0	1	0.0528	0.0528	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0	1	0.1056	FALSE	43	37	8	105	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND6--MT-TE	3	17	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0.1495	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU8_OVARY	1	1	0.1759	FALSE	499	1288	110	792	0	FALSE	ACH-000460
SNU8_OVARY	LUC7L--CTDNEP1	7	0	LUC7L	8639	chr16:256003:-	CTDNEP1	19037	chr17:7150662:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0616	0	LUC7L->LUC7_like,chr16:238968-279462:-,CTDNEP1->CTD_nuclear_envelope_phosphatase_1,chr17:7146910-7155810:-	SNU8_OVARY	1	1	0.0616	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	3	16	MT-ND5	2796	chrM:14132:+	MT-ATP8	5887	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.95	0.0264	0.1408	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0.95	1	0.1672	FALSE	43	37	8	105	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TC	4	12	MT-TA	1063	chrM:5593:-	MT-TC	4102	chrM:5794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0.1056	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU8_OVARY	1	1	0.1408	FALSE	462	80	0	856	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU8_OVARY	1	1	0.0616	FALSE	462	80	0	856	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TN	7	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU8_OVARY	1	1	0.0616	FALSE	369	2501	205	193	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TN	7	0	MT-TA	1020	chrM:5636:-	MT-TN	4113	chrM:5686:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU8_OVARY	1	1	0.0616	FALSE	369	2501	205	193	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	4	11	MT-ND5	2339	chrM:13675:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	4453	0	0	1	0.0352	0.0968	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0	1	0.132	FALSE	43	37	8	105	0	FALSE	ACH-000460
SNU8_OVARY	RP11-96H19.1--RP11-446N19.1	6	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0.0176	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU8_OVARY	1	1	0.0704	FALSE	407	2205	196	549	0	FALSE	ACH-000460
SNU8_OVARY	ST3GAL1--ADAM18	6	2	ST3GAL1	8438	chr8:134511378:-	ADAM18	48289	chr8:39581267:+	ONLY_REF_SPLICE	YES	63	0	0.11	1	0.0528	0.0176	ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,ADAM18->ADAM_metallopeptidase_domain_18,chr8:39442008-39587583:+	SNU8_OVARY	0.11	1	0.0704	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	AP000525.9--LA16c-60G3.6	6	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	6	0	0.54	1	0.0528	0.0088	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SNU8_OVARY	0.54	1	0.0616	TRUE	0	42	0	133	42	FALSE	ACH-000460
SNU8_OVARY	MT-ND3--MT-ATP8	6	1	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	NO	65	1	0.1	0.88	0.0528	0.0088	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0.1	0.88	0.0616	FALSE	351	233	23	137	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND3--MT-ATP8	6	1	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	NO	76	9	0.08	0.44	0.0528	0.0088	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0.08	0.44	0.0616	FALSE	351	233	23	137	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	6	1	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.0528	0.0088	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.7	1	0.0616	FALSE	344	821	44	306	0	FALSE	ACH-000460
SNU8_OVARY	FTH1--ACTG1	6	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SNU8_OVARY	1	1	0.0528	TRUE	0	0	0	64	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	3	12	MT-ND5	2623	chrM:13959:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2775	9	0.01	0.62	0.0264	0.1056	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0.01	0.62	0.132	FALSE	43	37	8	105	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND6--MT-TE	6	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU8_OVARY	1	1	0.0528	FALSE	499	1288	110	792	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	3	11	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	4267	1	0	0.93	0.0264	0.0968	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0	0.93	0.1232	FALSE	43	37	8	105	0	FALSE	ACH-000460
SNU8_OVARY	HSD17B4--TNFAIP8	5	2	HSD17B4	2435	chr5:118792063:+	TNFAIP8	44947	chr5:118728511:+	ONLY_REF_SPLICE	YES	269	68	0.03	0.09	0.044	0.0176	LOCAL_REARRANGEMENT:+:[52755],HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	SNU8_OVARY	0.03	0.09	0.0616	TRUE	0	0	0	1	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	3	10	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	54	0	0.19	1	0.0264	0.088	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.19	1	0.1144	FALSE	344	827	44	306	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	3	9	MT-ND5	2313	chrM:13649:+	MT-ATP8	5925	chrM:8478:+	INCL_NON_REF_SPLICE	YES	4526	418	0	0.03	0.0264	0.0792	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0	0.03	0.1056	FALSE	43	37	8	105	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	3	9	MT-ND5	2807	chrM:14143:+	MT-ATP8	5935	chrM:8488:+	INCL_NON_REF_SPLICE	YES	0	1091	1	0.01	0.0264	0.0792	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0.01	1	0.1056	FALSE	43	37	8	105	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	4	4	MT-ND5	1701	chrM:13037:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	5511	633	0	0.01	0.0352	0.0352	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0	0.01	0.0704	FALSE	42	36	7	104	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND6--MT-TE	5	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU8_OVARY	1	1	0.044	FALSE	499	1288	110	792	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU8_OVARY	1	1	0.044	FALSE	499	1288	110	792	0	FALSE	ACH-000460
SNU8_OVARY	PRR16--CTD-2334D19.1	5	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.044	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SNU8_OVARY	1	1	0.044	FALSE	56	216	12	147	0	FALSE	ACH-000460
SNU8_OVARY	MT-CO2--MT-ND2	4	3	MT-CO2	1356	chrM:7941:+	MT-ND2	5584	chrM:5369:+	INCL_NON_REF_SPLICE	NO	21703	80	0	0.08	0.0352	0.0264	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU8_OVARY	0	0.08	0.0616	FALSE	105	46	5	21	0	FALSE	ACH-000460
SNU8_OVARY	MT-CO2--MT-ND2	4	3	MT-CO2	1285	chrM:7870:+	MT-ND2	5522	chrM:5307:+	INCL_NON_REF_SPLICE	YES	21444	331	0	0.02	0.0352	0.0264	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU8_OVARY	0	0.02	0.0616	FALSE	105	46	5	21	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	3	7	MT-ND5	2317	chrM:13653:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4582	633	0	0.02	0.0264	0.0616	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0	0.02	0.088	FALSE	43	37	8	105	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	4	3	MT-ND5	2360	chrM:13696:+	MT-ATP8	6006	chrM:8559:+	INCL_NON_REF_SPLICE	NO	4386	744	0	0.01	0.0352	0.0264	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0	0.01	0.0616	FALSE	43	37	8	105	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND4--MT-ND4L	4	2	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0352	0.0176	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU8_OVARY	0.6	1	0.0528	FALSE	344	821	44	306	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	3	6	MT-ND5	1788	chrM:13124:+	MT-ATP8	5911	chrM:8464:+	INCL_NON_REF_SPLICE	YES	4791	3	0	0.75	0.0264	0.0528	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0	0.75	0.0792	FALSE	43	37	8	105	0	FALSE	ACH-000460
SNU8_OVARY	MT-TW--MT-ND2	4	2	MT-TW	1010	chrM:5521:+	MT-ND2	5017	chrM:5418:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.86	0.0352	0.0176	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU8_OVARY	0.86	1	0.0528	FALSE	14	0	0	19	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	3	5	MT-ND5	2741	chrM:14077:+	MT-ATP8	5963	chrM:8516:+	INCL_NON_REF_SPLICE	NO	0	2077	1	0	0.0264	0.044	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0	1	0.0704	FALSE	43	37	8	105	0	FALSE	ACH-000460
SNU8_OVARY	NRIP1--AF127936.7	4	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	27	0	0.16	1	0.0352	0.0088	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU8_OVARY	0.16	1	0.044	FALSE	164	806	69	479	0	FALSE	ACH-000460
SNU8_OVARY	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0.0088	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU8_OVARY	1	1	0.044	FALSE	515	4851	409	746	0	FALSE	ACH-000460
SNU8_OVARY	MT-CO2--MT-ND2	3	4	MT-CO2	1368	chrM:7953:+	MT-ND2	5517	chrM:5302:+	INCL_NON_REF_SPLICE	YES	21483	356	0	0.02	0.0264	0.0352	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU8_OVARY	0	0.02	0.0616	FALSE	105	46	5	21	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TN	4	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU8_OVARY	1	1	0.0352	FALSE	369	2501	205	193	0	FALSE	ACH-000460
SNU8_OVARY	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU8_OVARY	1	1	0.0352	FALSE	369	2501	205	193	0	FALSE	ACH-000460
SNU8_OVARY	MT-CO2--MT-ND2	3	3	MT-CO2	1249	chrM:7834:+	MT-ND2	5552	chrM:5337:+	INCL_NON_REF_SPLICE	YES	19793	165	0	0.04	0.0264	0.0264	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU8_OVARY	0	0.04	0.0528	FALSE	105	46	5	21	0	FALSE	ACH-000460
SNU8_OVARY	IRS2--CARS2	3	2	IRS2	5527	chr13:110434389:-	CARS2	20636	chr13:111340365:-	ONLY_REF_SPLICE	YES	21	41	0.19	0.11	0.0264	0.0176	IRS2->ArcherDX_panel,FoundationOne_panel,chr13:110406184-110438915:-,insulin_receptor_substrate_2,CARS2->chr13:111293759-111365950:-,cysteinyl-tRNA_synthetase_2,_mitochondrial_(putative)	SNU8_OVARY	0.11	0.19	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	IRS2--CARS2	3	2	IRS2	5527	chr13:110434389:-	CARS2	21939	chr13:111335481:-	ONLY_REF_SPLICE	YES	21	43	0.19	0.1	0.0264	0.0176	IRS2->ArcherDX_panel,FoundationOne_panel,chr13:110406184-110438915:-,insulin_receptor_substrate_2,CARS2->chr13:111293759-111365950:-,cysteinyl-tRNA_synthetase_2,_mitochondrial_(putative)	SNU8_OVARY	0.1	0.19	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	3	2	MT-ND5	1631	chrM:12967:+	MT-ATP8	6006	chrM:8559:+	INCL_NON_REF_SPLICE	YES	6395	744	0	0.01	0.0264	0.0176	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0	0.01	0.044	FALSE	42	36	7	104	0	FALSE	ACH-000460
SNU8_OVARY	MT-CO2--MT-ND2	3	1	MT-CO2	1368	chrM:7953:+	MT-ND2	5598	chrM:5383:+	INCL_NON_REF_SPLICE	YES	21483	52	0	0.07	0.0264	0.0088	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU8_OVARY	0	0.07	0.0352	FALSE	105	46	5	21	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND3--MT-ATP8	3	1	MT-ND3	1255	chrM:10313:+	MT-ATP8	4443	chrM:8462:+	INCL_NON_REF_SPLICE	NO	9	1	0.31	0.8	0.0264	0.0088	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	0.31	0.8	0.0352	FALSE	351	233	23	137	0	FALSE	ACH-000460
SNU8_OVARY	NRIP1--AF127936.7	3	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	21	0	0.16	1	0.0264	0.0088	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU8_OVARY	0.16	1	0.0352	FALSE	125	705	46	456	0	FALSE	ACH-000460
SNU8_OVARY	RP11-120D5.1--MID1	3	1	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	56	0.67	0.07	0.0264	0.0088	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU8_OVARY	0.07	0.67	0.0352	FALSE	2	31	0	60	0	FALSE	ACH-000460
SNU8_OVARY	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	12	1	0.25	0.0264	0.0088	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU8_OVARY	0.25	1	0.0352	TRUE	458	1351	185	561	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND3--MT-ATP8	3	0	MT-ND3	1060	chrM:10118:+	MT-ATP8	4489	chrM:8508:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	1	1	0.0264	FALSE	351	233	23	137	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND5--MT-ATP8	3	0	MT-ND5	1204	chrM:12540:+	MT-ATP8	5815	chrM:8368:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU8_OVARY	1	1	0.0264	FALSE	41	30	6	101	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1025	chrM:14649:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU8_OVARY	1	1	0.0264	FALSE	499	1288	110	792	0	FALSE	ACH-000460
SNU8_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU8_OVARY	1	1	0.0264	FALSE	499	1288	110	792	0	FALSE	ACH-000460
SNU8_OVARY	CKAP2L--ANTXR1	2	1	CKAP2L	11221	chr2:113498395:-	ANTXR1	35325	chr2:69379301:+	ONLY_REF_SPLICE	YES	48	23	0.06	0.12	0.0176	0.0088	CKAP2L->chr2:113493930-113522254:-,cytoskeleton_associated_protein_2_like,ANTXR1->anthrax_toxin_receptor_1,chr2:69240310-69476459:+	SNU8_OVARY	0.06	0.12	0.0264	TRUE	0	0	0	1	0	FALSE	ACH-000460
SNU8_OVARY	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	16	1	0.16	0.0176	0.0088	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU8_OVARY	0.16	1	0.0264	TRUE	465	1949	224	605	0	FALSE	ACH-000460
SNU8_OVARY	AC073610.5--ASB1	2	0	AC073610.5	1009	chr12:49333438:-	ASB1	10538	chr2:239352983:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	AC073610.5->chr12:49315767-49333446:-,ASB1->ankyrin_repeat_and_SOCS_box_containing_1,chr2:239335383-239360891:+	SNU8_OVARY	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	ATXN10--FBLN1	2	0	ATXN10	12366	chr22:46136418:+	FBLN1	53199	chr22:45996187:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	GTEx&tcga_normals:8/3694=0.22%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:+:[70663],ATXN10->ataxin_10,chr22:46067678-46241187:+,FBLN1->Oncogene{Bushman},chr22:45898118-45997015:+,fibulin_1	SNU8_OVARY	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	COL8A1--CMSS1	2	0	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SNU8_OVARY	1	1	0.0176	FALSE	38	10	2	29	0	FALSE	ACH-000460
SNU8_OVARY	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU8_OVARY	1	1	0.0176	FALSE	25	145	6	90	0	FALSE	ACH-000460
SNU8_OVARY	PIBF1--KLF5	2	0	PIBF1	6010	chr13:73372164:+	KLF5	34777	chr13:73649846:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	NEIGHBORS[38523],PIBF1->chr13:73356197-73590591:+,progesterone_immunomodulatory_binding_factor_1,KLF5->Kruppel-like_factor_5_(intestinal),Oncogene{Bushman},chr13:73629114-73651676:+	SNU8_OVARY	1	1	0.0176	FALSE	0	0	0	1	0	FALSE	ACH-000460
SNU8_OVARY	POGZ--FUBP3	2	0	POGZ	6239	chr1:151413404:-	FUBP3	37801	chr9:133495741:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	POGZ->chr1:151375200-151431941:-,pogo_transposable_element_with_ZNF_domain,FUBP3->chr9:133454352-133513739:+,far_upstream_element_binding_protein_3	SNU8_OVARY	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	RNF213--IFT57	2	0	RNF213	26377	chr17:78306431:+	IFT57	87173	chr3:107910490:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,IFT57->chr3:107879659-107941417:-,intraflagellar_transport_57	SNU8_OVARY	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000460
SNU8_OVARY	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU8_OVARY	1	1	0.0176	FALSE	93	270	15	244	0	FALSE	ACH-000460
SNU8_OVARY	FBRSL1--NOC4L	1	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	16	39	0.11	0.05	0.0088	0.0088	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	SNU8_OVARY	0.05	0.11	0.0176	TRUE	3	48	0	26	0	FALSE	ACH-000460
SNU8_OVARY	GRHL2--NACAP1	1	1	GRHL2	1358	chr8:102505017:+	NACAP1	25847	chr8:102379851:+	ONLY_REF_SPLICE	YES	20	0	0.09	1	0.0088	0.0088	GRHL2->chr8:102504660-102681954:+,grainyhead_like_transcription_factor_2,NACAP1->chr8:102374022-102384935:+,nascent_polypeptide_associated_complex_alpha_subunit_pseudogene_1	SNU8_OVARY	0.09	1	0.0176	TRUE	0	2	0	1	2	TRUE	ACH-000460
SNU8_OVARY	RP11-307P5.1--SASH1	1	1	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0088	0.0088	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SNU8_OVARY	1	1	0.0176	TRUE	0	2	0	37	2	FALSE	ACH-000460
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASH1L--PFN1	178	106	ASH1L	1655	chr1:155531944:-	PFN1	42628	chr17:4849292:-	ONLY_REF_SPLICE	YES	14	1631	0.95	0.15	2.2201	1.3221	ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-,PFN1->Oncogene{Bushman},chr17:4848947-4852356:-,profilin_1	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.95	3.5422	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	151	119	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	79	21	0.77	0.93	1.8834	1.4843	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.93	3.3677	TRUE	267	562	48	632	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	109	160	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	82	21	0.77	0.93	1.3595	1.9956	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.93	3.3551	TRUE	267	562	48	632	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AP000345.1	83	0	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.0352	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0352	TRUE	4	17	0	31	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	45	7	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5613	0.0873	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6486	TRUE	508	994	45	981	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	13	122	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	79	21	0.63	0.87	0.1621	1.5217	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.87	1.6838	TRUE	267	562	48	632	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	42	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5239	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5239	TRUE	0	0	0	518	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	132	C15orf57	2548	chr15:40854971:-	CBX3	19796	chr7:26241364:+	INCL_NON_REF_SPLICE	YES	79	21	0.63	0.87	0.0374	1.6464	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.87	1.6838	TRUE	267	562	48	632	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD13A--CCDC63	26	7	ANKRD13A	1599	chr12:110437589:+	CCDC63	27587	chr12:111296390:+	ONLY_REF_SPLICE	YES	7	0	0.82	1	0.3243	0.0873	ANKRD13A->ankyrin_repeat_domain_13A,chr12:110436991-110477568:+,CCDC63->chr12:111284573-111345339:+,coiled-coil_domain_containing_63	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.4116	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAAF1--PLXNA1	25	5	PAAF1	6064	chr11:73598502:+	PLXNA1	44039	chr3:126751230:+	ONLY_REF_SPLICE	YES	67	104	0.31	0.22	0.3118	0.0624	PAAF1->chr11:73587744-73638790:+,proteasomal_ATPase_associated_factor_1,PLXNA1->chr3:126707437-126756235:+,plexin_A1	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.31	0.3742	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	26	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	160	4	0.14	0.87	0.3243	0.0125	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.87	0.3368	TRUE	519	3926	326	965	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AP000345.1	17	7	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	20	0	0.55	1	0.212	0.0873	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.2993	TRUE	0	8	0	37	1	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	15	3	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	5395	0	0	1	0.1871	0.0374	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2245	TRUE	0	0	0	100	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAPDH--IGL@	14	2	GAPDH	4753	chr12:6646869:+	IGL@	58496	chr22:23154241:+	INCL_NON_REF_SPLICE	YES	5364	105	0	0.13	0.1746	0.0249	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,IGL@->Oncogene{Bushman}	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.13	0.1995	TRUE	0	0	0	1	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERCC1--IGL@	11	0	ERCC1	5740	chr19:45927378:-	IGL@	82199	chr22:23243161:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1372	0	ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1,IGL@->Oncogene{Bushman}	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1372	TRUE	0	1	0	1	1	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR4--KCNJ6	10	3	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	6	0	0.68	1	0.1247	0.0374	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	1	0.1621	FALSE	0	24	0	27	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	9	6	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	5	0	0.75	1	0.1123	0.0748	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.1871	FALSE	20	187	4	79	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERCC1--IGL@	10	0	ERCC1	5740	chr19:45927378:-	IGL@	84837	chr22:23248517:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1247	0	ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1,IGL@->Oncogene{Bushman}	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1247	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	9	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	19	767	0.34	0.01	0.1123	0.0125	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.34	0.1248	TRUE	0	0	0	434	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL32--C3orf83	7	2	RPL32	3240	chr3:12880848:-	C3orf83	10581	chr3:12595633:-	ONLY_REF_SPLICE	YES	2583	0	0	1	0.0873	0.0249	RPL32->chr3:12875984-12883087:-,ribosomal_protein_L32,C3orf83->chr3:12556433-12602558:-	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1122	TRUE	0	0	0	1	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-114H21.2--CTB-1I21.1	5	8	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.0624	0.0998	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.1622	TRUE	0	2	0	12	2	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-476K15.1--CTD-2015H3.2	7	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0873	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0873	FALSE	0	46	0	73	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	5	6	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	5	1	0.69	0.92	0.0624	0.0748	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.92	0.1372	FALSE	33	240	4	98	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAPDH--IGL@	6	2	GAPDH	4760	chr12:6646876:+	IGL@	40408	chr22:23010765:+	INCL_NON_REF_SPLICE	YES	5490	16	0	0.33	0.0748	0.0249	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,IGL@->Oncogene{Bushman}	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.33	0.0997	FALSE	0	0	0	1	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0748	0.0249	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0997	FALSE	499	1288	110	792	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCARB1--UBC	6	2	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	116	51	0.06	0.14	0.0748	0.0249	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.14	0.0997	TRUE	55	66	6	101	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASXL2--DTNB	6	1	ASXL2	2434	chr2:26068350:-	DTNB	38383	chr2:25830190:-	ONLY_REF_SPLICE	YES	7	12	0.5	0.37	0.0748	0.0125	NEIGHBORS[60119],ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,DTNB->chr2:25600067-25896503:-,dystrobrevin_beta	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.5	0.0873	FALSE	0	0	0	1	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAPDH--IGL@	4	8	GAPDH	5321	chr12:6647437:+	IGL@	58558	chr22:23154303:+	INCL_NON_REF_SPLICE	YES	75	180	0.14	0.06	0.0499	0.0998	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,IGL@->Oncogene{Bushman}	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.14	0.1497	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAP1GDS1--RP11-696N14.1	5	3	RAP1GDS1	2297	chr4:99214666:+	RP11-696N14.1	36380	chr4:100125514:+	ONLY_REF_SPLICE	YES	92	0	0.08	1	0.0624	0.0374	RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+,RP11-696N14.1->chr4:100010008-100222513:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0998	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	5	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	19	693	0.24	0.01	0.0624	0.0125	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.24	0.0749	FALSE	0	0	0	434	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	5	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0624	0.0125	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0749	FALSE	46	201	11	112	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAP1GDS1--RP11-696N14.1	3	5	RAP1GDS1	2297	chr4:99214666:+	RP11-696N14.1	32959	chr4:100078648:+	INCL_NON_REF_SPLICE	YES	92	3	0.08	0.73	0.0374	0.0624	RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+,RP11-696N14.1->chr4:100010008-100222513:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.73	0.0998	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASH1L--PFN1	4	0	ASH1L	1029	chr1:155532570:-	PFN1	42628	chr17:4849292:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0499	0	ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-,PFN1->Oncogene{Bushman},chr17:4848947-4852356:-,profilin_1	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0499	FALSE	499	1288	110	792	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	2	7	CTD-2008L17.1	3828	chr18:53685010:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0.0873	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1122	FALSE	1	24	0	14	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	19	679	0.17	0.01	0.0374	0.0125	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.17	0.0499	FALSE	0	0	0	434	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASH1L--SLC25A11	2	4	ASH1L	1655	chr1:155531944:-	SLC25A11	40603	chr17:4842507:-	ONLY_REF_SPLICE	YES	14	120	0.3	0.05	0.0249	0.0499	ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-,SLC25A11->chr17:4840425-4843546:-,solute_carrier_family_25_member_11	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.3	0.0748	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAPDH--IGL@	3	0	GAPDH	4191	chr12:6646307:+	IGL@	58544	chr22:23154289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,IGL@->Oncogene{Bushman}	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAP1GDS1--RP11-696N14.1	1	7	RAP1GDS1	2297	chr4:99214666:+	RP11-696N14.1	30013	chr4:100075702:+	ONLY_REF_SPLICE	YES	92	5	0.08	0.62	0.0125	0.0873	RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+,RP11-696N14.1->chr4:100010008-100222513:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.62	0.0998	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	2	3	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0249	0.0374	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0623	FALSE	49	120	16	70	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0249	0.0249	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0498	FALSE	16	356	14	466	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	2	2	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0.0249	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0498	FALSE	141	264	50	91	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0.0249	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0498	FALSE	515	4851	409	746	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD13A--CCDC63	2	1	ANKRD13A	1134	chr12:110437124:+	CCDC63	27587	chr12:111296390:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0249	0.0125	ANKRD13A->ankyrin_repeat_domain_13A,chr12:110436991-110477568:+,CCDC63->chr12:111284573-111345339:+,coiled-coil_domain_containing_63	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASXL2--DTNB	2	1	ASXL2	2434	chr2:26068350:-	DTNB	40926	chr2:25819109:-	ONLY_REF_SPLICE	YES	7	11	0.3	0.21	0.0249	0.0125	NEIGHBORS[60119],ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,DTNB->chr2:25600067-25896503:-,dystrobrevin_beta	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.3	0.0374	FALSE	0	0	0	1	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUDCD1--RP11-1084E5.1	2	1	NUDCD1	13056	chr8:110257551:-	RP11-1084E5.1	20569	chr8:110056356:-	ONLY_REF_SPLICE	YES	69	0	0.04	1	0.0249	0.0125	NUDCD1->NudC_domain_containing_1,chr8:110253148-110346614:-,RP11-1084E5.1->chr8:109907258-110075646:-	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0374	TRUE	0	1	0	1	1	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASXL2--DTNB	2	0	ASXL2	2434	chr2:26068350:-	DTNB	43278	chr2:25803695:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	NEIGHBORS[60119],ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,DTNB->chr2:25600067-25896503:-,dystrobrevin_beta	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	FALSE	0	0	0	1	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--ANAPC16	2	0	C17orf76-AS1	1593	chr17:16342728:+	ANAPC16	16237	chr10:73990124:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	C17orf76-AS1->chr17:16342136-16381992:+,ANAPC16->anaphase_promoting_complex_subunit_16,chr10:73975787-73995618:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00624--FMO5	2	0	LINC00624	3701	chr1:146986158:-	FMO5	8747	chr1:146696658:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	LINC00624->chr1:146986158-146989699:-,long_intergenic_non-protein_coding_RNA_624,FMO5->chr1:146646930-146714700:-,flavin_containing_monooxygenase_5	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	3	1	2	3	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	2	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	FALSE	0	24	0	62	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	2	0	LINC01036	2179	chr1:187272671:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	FALSE	0	1	0	5	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFA4--PHF14	2	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	19	32	3	60	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM47--SEC11C	2	0	RBM47	9994	chr4:40468594:-	SEC11C	26306	chr18:56816745:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,SEC11C->SEC11_homolog_C,_signal_peptidase_complex_subunit,chr18:56806709-56826068:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL32--C3orf83	2	0	RPL32	3240	chr3:12880848:-	C3orf83	13258	chr3:12584728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	RPL32->chr3:12875984-12883087:-,ribosomal_protein_L32,C3orf83->chr3:12556433-12602558:-	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0125	0.0374	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0499	FALSE	467	2173	244	435	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0125	0.0249	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0374	FALSE	407	2205	196	549	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASXL2--DTNB	1	1	ASXL2	1351	chr2:26101035:-	DTNB	38383	chr2:25830190:-	ONLY_REF_SPLICE	YES	8	12	0.2	0.14	0.0125	0.0125	NEIGHBORS[60119],ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,DTNB->chr2:25600067-25896503:-,dystrobrevin_beta	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.2	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL9L--BRF1	1	1	BCL9L	2450	chr11:118789535:-	BRF1	40343	chr14:105718916:-	ONLY_REF_SPLICE	YES	15	62	0.12	0.03	0.0125	0.0125	BCL9L->B-cell_CLL/lymphoma_9-like,chr11:118764584-118796317:-,BRF1->BRF1,_RNA_polymerase_III_transcription_initiation_factor_90_kDa_subunit,chr14:105675623-105781926:-	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.12	0.025	TRUE	0	0	0	1	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	1	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	7991	chr5:96856933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0125	0.0125	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.025	FALSE	0	1	1	12	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23--FAF1	1	1	RPL23	1822	chr17:37009275:-	FAF1	21699	chr1:51061888:-	ONLY_REF_SPLICE	YES	918	101	0	0.02	0.0125	0.0125	RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000598
KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG5--AC016710.1	1	1	SNHG5	1780	chr6:86387672:-	AC016710.1	9207	chr2:140227345:+	ONLY_REF_SPLICE	NO	760	0	0	1	0.0125	0.0125	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,AC016710.1->chr2:140227345-140235317:+	KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000598
PC9_LUNG	ZSCAN22--CHMP2A	969	64	ZSCAN22	1096	chr19:58838480:+	CHMP2A	11518	chr19:59065603:-	ONLY_REF_SPLICE	YES	0	241	1	0.81	9.7656	0.645	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC9_LUNG	0.81	1	10.4106	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	FUT8--GALNT16	281	130	FUT8	12030	chr14:66028484:+	GALNT16	42140	chr14:69808398:+	ONLY_REF_SPLICE	YES	255	0	0.62	1	2.8319	1.3101	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,GALNT16->chr14:69725994-69821183:+,polypeptide_N-acetylgalactosaminyltransferase_16	PC9_LUNG	0.62	1	4.142	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	ZSCAN22--CHMP2A	271	33	ZSCAN22	1091	chr19:58838475:+	CHMP2A	11518	chr19:59065603:-	INCL_NON_REF_SPLICE	YES	6	241	0.98	0.56	2.7311	0.3326	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC9_LUNG	0.56	0.98	3.0637	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	ATN1--TPI1	165	91	ATN1	9629	chr12:7050186:+	TPI1	16858	chr12:6979213:+	ONLY_REF_SPLICE	YES	201	4224	0.56	0.06	1.6629	0.9171	LOCAL_REARRANGEMENT:+:[53514],ATN1->atrophin_1,chr12:7033626-7051484:+,TPI1->chr12:6976283-6980112:+,triosephosphate_isomerase_1	PC9_LUNG	0.06	0.56	2.58	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	MT-TA--MT-TC	157	24	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5822	0.2419	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PC9_LUNG	1	1	1.8241	FALSE	462	80	0	856	0	FALSE	ACH-000779
PC9_LUNG	EFHD1--UBR3	126	43	EFHD1	7630	chr2:233537153:+	UBR3	52132	chr2:170917589:+	ONLY_REF_SPLICE	YES	46	40	0.79	0.81	1.2698	0.4334	EFHD1->EF-hand_domain_family_member_D1,chr2:233470767-233547491:+,UBR3->chr2:170683968-170940641:+,ubiquitin_protein_ligase_E3_component_n-recognin_3_(putative)	PC9_LUNG	0.79	0.81	1.7032	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	TIMM23B--LINC00843	94	40	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9473	0.4031	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PC9_LUNG	0.99	1	1.3504	TRUE	508	994	45	981	0	FALSE	ACH-000779
PC9_LUNG	TNFAIP8--HSD17B4	78	64	TNFAIP8	6599	chr5:118691816:+	HSD17B4	47112	chr5:118877600:+	ONLY_REF_SPLICE	YES	67	189	0.68	0.43	0.7861	0.645	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	PC9_LUNG	0.43	0.68	1.4311	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	TNFAIP8--HSD17B4	62	36	TNFAIP8	1216	chr5:118604602:+	HSD17B4	47112	chr5:118877600:+	ONLY_REF_SPLICE	YES	27	189	0.78	0.34	0.6248	0.3628	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	PC9_LUNG	0.34	0.78	0.9876	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	CPSF3--ASAP2	53	30	CPSF3	8834	chr2:9576490:+	ASAP2	48165	chr2:9533611:+	ONLY_REF_SPLICE	YES	265	44	0.24	0.65	0.5341	0.3023	LOCAL_REARRANGEMENT:+:[17885],CPSF3->chr2:9563697-9613230:+,cleavage_and_polyadenylation_specific_factor_3,ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+	PC9_LUNG	0.24	0.65	0.8364	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	ZSCAN22--CHMP2A	42	64	ZSCAN22	1096	chr19:58838480:+	CHMP2A	10677	chr19:59066444:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4233	0.645	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC9_LUNG	1	1	1.0683	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	TIMM23--RP11-464F9.1	54	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	516	3	0.1	0.95	0.5442	0.0202	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PC9_LUNG	0.1	0.95	0.5644	TRUE	519	3926	326	965	0	FALSE	ACH-000779
PC9_LUNG	ZNF623--GSDMD	38	22	ZNF623	1133	chr8:144718315:+	GSDMD	15594	chr8:144642773:+	ONLY_REF_SPLICE	YES	27	216	0.69	0.22	0.383	0.2217	LOCAL_REARRANGEMENT:+:[72951],ZNF623->chr8:144718183-144735900:+,zinc_finger_protein_623,GSDMD->chr8:144635377-144645232:+,gasdermin_D	PC9_LUNG	0.22	0.69	0.6047	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	SYMPK--NOVA2	31	16	SYMPK	16165	chr19:46333312:-	NOVA2	39867	chr19:46444203:-	ONLY_REF_SPLICE	YES	143	0	0.25	1	0.3124	0.1612	LOCAL_REARRANGEMENT:-:[70444],SYMPK->chr19:46318668-46366548:-,symplekin,NOVA2->NOVA_alternative_splicing_regulator_2,chr19:46436992-46476804:-	PC9_LUNG	0.25	1	0.4736	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	SHISA9--U91319.1	30	15	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	22	0	0.67	1	0.3023	0.1512	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	PC9_LUNG	0.67	1	0.4535	FALSE	4	37	0	19	0	FALSE	ACH-000779
PC9_LUNG	PLXDC1--TAF13	32	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3225	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	PC9_LUNG	1	1	0.3225	TRUE	7	10	0	216	0	FALSE	ACH-000779
PC9_LUNG	PEX1--FAM133B	28	11	PEX1	1225	chr7:92157621:-	FAM133B	33172	chr7:92207707:-	ONLY_REF_SPLICE	YES	26	117	0.6	0.25	0.2822	0.1109	LOCAL_REARRANGEMENT:-:[32262],PEX1->chr7:92116334-92157845:-,peroxisomal_biogenesis_factor_1,FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B	PC9_LUNG	0.25	0.6	0.3931	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	MT-TA--MT-TC	19	26	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1915	0.262	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PC9_LUNG	1	1	0.4535	FALSE	462	80	0	856	0	FALSE	ACH-000779
PC9_LUNG	TBC1D22A--GRAMD4	22	7	TBC1D22A	1228	chr22:47158745:+	GRAMD4	31919	chr22:47054084:+	ONLY_REF_SPLICE	YES	131	60	0.18	0.33	0.2217	0.0705	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	PC9_LUNG	0.18	0.33	0.2922	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	FUT8--GALNT16	2	85	FUT8	12030	chr14:66028484:+	GALNT16	43224	chr14:69813757:+	ONLY_REF_SPLICE	YES	255	2	0.25	0.98	0.0202	0.8566	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,GALNT16->chr14:69725994-69821183:+,polypeptide_N-acetylgalactosaminyltransferase_16	PC9_LUNG	0.25	0.98	0.8768	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	ZSCAN22--CHMP2A	7	64	ZSCAN22	1096	chr19:58838480:+	CHMP2A	10762	chr19:59066359:-	INCL_NON_REF_SPLICE	YES	0	31	1	0.7	0.0705	0.645	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC9_LUNG	0.7	1	0.7155	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	RP11-307P5.1--SASH1	19	15	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	8	1	0.81	0.1915	0.1512	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	PC9_LUNG	0.81	1	0.3427	TRUE	0	2	0	37	2	FALSE	ACH-000779
PC9_LUNG	MT-TA--MT-TC	14	32	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1411	0.3225	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PC9_LUNG	1	1	0.4636	FALSE	462	80	0	856	0	FALSE	ACH-000779
PC9_LUNG	ZDHHC5--CLP1	19	11	ZDHHC5	7247	chr11:57456137:+	CLP1	22601	chr11:57426927:+	ONLY_REF_SPLICE	YES	200	18	0.13	0.62	0.1915	0.1109	LOCAL_REARRANGEMENT:+:[5879],ZDHHC5->chr11:57435219-57468659:+,zinc_finger_DHHC-type_containing_5,CLP1->Oncogene{Bushman},chr11:57416465-57429340:+,cleavage_and_polyadenylation_factor_I_subunit_1	PC9_LUNG	0.13	0.62	0.3024	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	ZSCAN22--CHMP2A	6	62	ZSCAN22	1096	chr19:58838480:+	CHMP2A	11527	chr19:59065594:-	INCL_NON_REF_SPLICE	YES	0	235	1	0.22	0.0605	0.6248	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC9_LUNG	0.22	1	0.6853	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	ZSCAN22--CHMP2A	12	33	ZSCAN22	1091	chr19:58838475:+	CHMP2A	10677	chr19:59066444:-	INCL_NON_REF_SPLICE	YES	6	0	0.88	1	0.1209	0.3326	ZSCAN22->Oncogene{Bushman},chr19:58838385-58853698:+,zinc_finger_and_SCAN_domain_containing_22,CHMP2A->charged_multivesicular_body_protein_2A,chr19:59062933-59066491:-	PC9_LUNG	0.88	1	0.4535	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	UBASH3B--MEP1B	17	5	UBASH3B	17454	chr11:122672040:+	MEP1B	42010	chr18:29796954:+	ONLY_REF_SPLICE	YES	280	0	0.07	1	0.1713	0.0504	UBASH3B->chr11:122526383-122685181:+,ubiquitin_associated_and_SH3_domain_containing_B,MEP1B->chr18:29765032-29800367:+,meprin_A_subunit_beta	PC9_LUNG	0.07	1	0.2217	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	TNFAIP8--HSD17B4	1	64	TNFAIP8	6599	chr5:118691816:+	HSD17B4	22456	chr5:118809603:+	ONLY_REF_SPLICE	YES	67	238	0.49	0.21	0.0101	0.645	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	PC9_LUNG	0.21	0.49	0.6551	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	MT-TA--MT-TY	14	1	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1411	0.0101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	PC9_LUNG	1	1	0.1512	FALSE	13	214	14	42	0	FALSE	ACH-000779
PC9_LUNG	NPM1P24--SET	14	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1411	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PC9_LUNG	1	1	0.1411	TRUE	0	0	0	434	0	FALSE	ACH-000779
PC9_LUNG	SEPT11--CCNG2	12	7	SEPT11	1228	chr4:77871083:+	CCNG2	30949	chr4:78079686:+	ONLY_REF_SPLICE	YES	43	85	0.31	0.18	0.1209	0.0705	SEPT11->chr4:77870856-77961537:+,septin_11,CCNG2->chr4:78078304-78354542:+,cyclin_G2	PC9_LUNG	0.18	0.31	0.1914	TRUE	0	1	0	4	1	TRUE	ACH-000779
PC9_LUNG	MT-TA--MT-TC	13	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.131	0.0202	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PC9_LUNG	1	1	0.1512	FALSE	462	80	0	856	0	FALSE	ACH-000779
PC9_LUNG	FTH1--KRT18	11	7	FTH1	1289	chr11:61734844:-	KRT18	8423	chr12:53342902:+	INCL_NON_REF_SPLICE	YES	12827	0	0	1	0.1109	0.0705	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,KRT18->chr12:53342655-53346685:+,keratin_18	PC9_LUNG	0	1	0.1814	TRUE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	MT-ND5--MT-ND6	11	5	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	4	3904	0.8	0	0.1109	0.0504	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	PC9_LUNG	0	0.8	0.1613	FALSE	26	124	4	93	0	FALSE	ACH-000779
PC9_LUNG	MT-TA--MT-TC	4	32	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0.3225	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PC9_LUNG	1	1	0.3628	FALSE	462	80	0	856	0	FALSE	ACH-000779
PC9_LUNG	RP11-96H19.1--RP11-446N19.1	8	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0806	0.131	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PC9_LUNG	1	1	0.2116	FALSE	407	2205	196	549	0	FALSE	ACH-000779
PC9_LUNG	RP11-96H19.1--RP11-446N19.1	9	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.0907	0.0806	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PC9_LUNG	0.94	1	0.1713	FALSE	467	2173	244	435	0	FALSE	ACH-000779
PC9_LUNG	MT-TA--MT-TC	4	27	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0.2721	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PC9_LUNG	1	1	0.3124	FALSE	462	80	0	856	0	FALSE	ACH-000779
PC9_LUNG	RP11-123O10.4--GRIP1	10	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.1008	0.0202	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PC9_LUNG	0.92	1	0.121	FALSE	416	2512	207	587	0	FALSE	ACH-000779
PC9_LUNG	RP11-680G10.1--GSE1	9	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	52	1	0.2	0.0907	0.0403	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PC9_LUNG	0.2	1	0.131	TRUE	465	1949	224	605	0	FALSE	ACH-000779
PC9_LUNG	TNFAIP8--HSD17B4	1	36	TNFAIP8	1216	chr5:118604602:+	HSD17B4	19973	chr5:118792010:+	ONLY_REF_SPLICE	YES	27	193	0.58	0.16	0.0101	0.3628	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	PC9_LUNG	0.16	0.58	0.3729	FALSE	0	0	0	4	0	FALSE	ACH-000779
PC9_LUNG	MT-ND5--MT-ND6	8	7	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0806	0.0705	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	PC9_LUNG	1	1	0.1511	FALSE	26	124	4	93	0	FALSE	ACH-000779
PC9_LUNG	MT-TA--MT-TC	3	27	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.2721	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PC9_LUNG	1	1	0.3023	FALSE	462	80	0	856	0	FALSE	ACH-000779
PC9_LUNG	NRIP1--AF127936.7	9	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.0907	0.0302	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PC9_LUNG	0.8	1	0.1209	FALSE	292	1546	117	613	0	FALSE	ACH-000779
PC9_LUNG	ZNF623--GSDMD	2	24	ZNF623	1403	chr8:144718585:+	GSDMD	15594	chr8:144642773:+	ONLY_REF_SPLICE	YES	54	216	0.33	0.11	0.0202	0.2419	LOCAL_REARRANGEMENT:+:[72951],ZNF623->chr8:144718183-144735900:+,zinc_finger_protein_623,GSDMD->chr8:144635377-144645232:+,gasdermin_D	PC9_LUNG	0.11	0.33	0.2621	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	RP11-114H21.2--CTB-1I21.1	1	25	RP11-114H21.2	2303	chr5:135840382:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	6	0	0.81	1	0.0101	0.252	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	PC9_LUNG	0.81	1	0.2621	TRUE	0	0	0	4	0	TRUE	ACH-000779
PC9_LUNG	FTH1--ACTB	6	4	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	10752	2	0	0.83	0.0605	0.0403	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	PC9_LUNG	0	0.83	0.1008	TRUE	1	0	0	97	0	FALSE	ACH-000779
PC9_LUNG	RP11-114H21.2--CTB-1I21.1	1	24	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	7	0	0.78	1	0.0101	0.2419	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	PC9_LUNG	0.78	1	0.252	TRUE	0	2	0	12	2	TRUE	ACH-000779
PC9_LUNG	RP11-96H19.1--RP11-446N19.1	5	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.0504	0.0806	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PC9_LUNG	0.93	1	0.131	FALSE	515	4851	409	746	0	FALSE	ACH-000779
PC9_LUNG	MT-TA--MT-TY	6	2	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0605	0.0202	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	PC9_LUNG	1	1	0.0807	FALSE	13	214	14	42	0	FALSE	ACH-000779
PC9_LUNG	RP11-96H19.1--RP11-446N19.1	3	13	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0.131	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PC9_LUNG	1	1	0.1612	FALSE	192	492	57	212	0	FALSE	ACH-000779
PC9_LUNG	AC104389.28--HBG1	5	4	AC104389.28	3440	chr11:5367003:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	82	1	0.1	0.9	0.0504	0.0403	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	PC9_LUNG	0.1	0.9	0.0907	FALSE	0	0	0	7	0	FALSE	ACH-000779
PC9_LUNG	FTH1--ACTB	5	4	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	11312	4	0	0.69	0.0504	0.0403	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	PC9_LUNG	0	0.69	0.0907	FALSE	1	0	0	97	0	FALSE	ACH-000779
PC9_LUNG	MT-TA--MT-TY	5	2	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0504	0.0202	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	PC9_LUNG	1	1	0.0706	FALSE	13	214	14	42	0	FALSE	ACH-000779
PC9_LUNG	C9orf3--RP11-49O14.2	5	0	C9orf3	19565	chr9:97718297:+	RP11-49O14.2	42737	chr9:97666373:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0504	0	NEIGHBORS_OVERLAP:+:+:[4325],C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,RP11-49O14.2->chr9:97662711-97667036:+	PC9_LUNG	1	1	0.0504	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	EFHD1--UBR3	2	12	EFHD1	7630	chr2:233537153:+	UBR3	53521	chr2:170929938:+	ONLY_REF_SPLICE	YES	46	81	0.23	0.15	0.0202	0.1209	EFHD1->EF-hand_domain_family_member_D1,chr2:233470767-233547491:+,UBR3->chr2:170683968-170940641:+,ubiquitin_protein_ligase_E3_component_n-recognin_3_(putative)	PC9_LUNG	0.15	0.23	0.1411	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0504	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PC9_LUNG	1	1	0.0504	TRUE	0	0	0	434	0	FALSE	ACH-000779
PC9_LUNG	RP11-307P5.1--SASH1	4	4	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	9	8	0.47	0.5	0.0403	0.0403	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	PC9_LUNG	0.47	0.5	0.0806	TRUE	0	0	0	16	0	TRUE	ACH-000779
PC9_LUNG	RP11-680G10.1--GSE1	4	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.47	0.0403	0.0403	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PC9_LUNG	0.47	1	0.0806	TRUE	458	1351	185	561	0	FALSE	ACH-000779
PC9_LUNG	FTH1--ACTB	4	3	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	9647	3	0	0.7	0.0403	0.0302	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	PC9_LUNG	0	0.7	0.0705	FALSE	1	0	0	97	0	FALSE	ACH-000779
PC9_LUNG	TXNRD1--CHST11	4	3	TXNRD1	11664	chr12:104682818:+	CHST11	40027	chr12:105150727:+	ONLY_REF_SPLICE	YES	2416	333	0	0.02	0.0403	0.0302	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	PC9_LUNG	0	0.02	0.0705	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	MT-ND5--MT-ND6	3	6	MT-ND5	2761	chrM:14097:+	MT-ND6	6169	chrM:14317:-	INCL_NON_REF_SPLICE	YES	0	4082	1	0	0.0302	0.0605	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	PC9_LUNG	0	1	0.0907	FALSE	26	124	4	93	0	FALSE	ACH-000779
PC9_LUNG	AC104389.28--HBG1	4	0	AC104389.28	1084	chr11:5526799:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0403	0	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	PC9_LUNG	1	1	0.0403	FALSE	0	1	0	13	0	FALSE	ACH-000779
PC9_LUNG	FTH1--ACTB	3	4	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	10787	2	0	0.78	0.0302	0.0403	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	PC9_LUNG	0	0.78	0.0705	FALSE	1	0	0	97	0	FALSE	ACH-000779
PC9_LUNG	NRIP1--AF127936.7	2	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.28	1	0.0202	0.0806	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PC9_LUNG	0.28	1	0.1008	FALSE	164	806	69	479	0	FALSE	ACH-000779
PC9_LUNG	RCC1--ANXA2	4	0	RCC1	2175	chr1:28834672:+	ANXA2	35637	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0403	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ANXA2->annexin_A2,chr15:60639333-60695082:-	PC9_LUNG	1	1	0.0403	TRUE	0	0	0	2	0	TRUE	ACH-000779
PC9_LUNG	RCC1--RPS6KC1	4	0	RCC1	2175	chr1:28834672:+	RPS6KC1	33457	chr1:213415912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0403	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RPS6KC1->chr1:213224589-213448116:+,ribosomal_protein_S6_kinase_C1	PC9_LUNG	1	1	0.0403	TRUE	0	1	0	1	0	TRUE	ACH-000779
PC9_LUNG	STS--RP11-692P14.1	3	3	STS	2372	chrX:7171377:+	RP11-692P14.1	19696	chrX:7986097:+	ONLY_REF_SPLICE	YES	8	0	0.43	1	0.0302	0.0302	STS->chrX:7137497-7272851:+,steroid_sulfatase_(microsomal),_isozyme_S,RP11-692P14.1->chrX:7975419-7986201:+	PC9_LUNG	0.43	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	MT-TA--MT-TY	3	2	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.0202	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	PC9_LUNG	1	1	0.0504	FALSE	13	214	14	42	0	FALSE	ACH-000779
PC9_LUNG	MT-TA--MT-TY	3	2	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.0202	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	PC9_LUNG	1	1	0.0504	FALSE	13	214	14	42	0	FALSE	ACH-000779
PC9_LUNG	TXNRD1--CHST11	1	10	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	NO	3238	289	0	0.04	0.0101	0.1008	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	PC9_LUNG	0	0.04	0.1109	TRUE	0	2	1	13	2	TRUE	ACH-000779
PC9_LUNG	RP11-59N23.1--CMAS	3	1	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	0	399	1	0.01	0.0302	0.0101	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	PC9_LUNG	0.01	1	0.0403	FALSE	21	102	17	28	0	FALSE	ACH-000779
PC9_LUNG	TGIF1--MYL12B	3	1	TGIF1	3515	chr18:3418213:+	MYL12B	20407	chr18:3272882:+	ONLY_REF_SPLICE	YES	108	624	0.04	0.01	0.0302	0.0101	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Lung=1},TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	PC9_LUNG	0.01	0.04	0.0403	FALSE	0	1	0	1	0	FALSE	ACH-000779
PC9_LUNG	TIMM23B--LINC00843	3	1	TIMM23B	1257	chr10:51371646:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	734	1	0.01	0.8	0.0302	0.0101	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PC9_LUNG	0.01	0.8	0.0403	FALSE	0	0	0	10	0	FALSE	ACH-000779
PC9_LUNG	TNFAIP8--HSD17B4	2	5	TNFAIP8	6599	chr5:118691816:+	HSD17B4	48541	chr5:118961659:+	ONLY_REF_SPLICE	YES	67	0	0.09	1	0.0202	0.0504	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	PC9_LUNG	0.09	1	0.0706	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	DANCR--ITGB3BP	3	0	DANCR	1530	chr4:53579126:+	ITGB3BP	18619	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	PC9_LUNG	1	1	0.0302	TRUE	0	0	0	9	0	TRUE	ACH-000779
PC9_LUNG	PCNP--RARRES1	3	0	PCNP	1185	chr3:101293123:+	RARRES1	16261	chr3:158422716:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	PCNP->PEST_proteolytic_signal_containing_nuclear_protein,chr3:101292939-101313281:+,RARRES1->Oncogene{Bushman},chr3:158414681-158450485:-,retinoic_acid_receptor_responder_1	PC9_LUNG	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	TXNRD1--CHST11	2	4	TXNRD1	17935	chr12:104709674:+	CHST11	40027	chr12:105150727:+	ONLY_REF_SPLICE	YES	3076	333	0	0.02	0.0202	0.0403	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	PC9_LUNG	0	0.02	0.0605	FALSE	0	0	0	2	0	FALSE	ACH-000779
PC9_LUNG	TXNRD1--CHST11	1	8	TXNRD1	25191	chr12:104725419:+	CHST11	40027	chr12:105150727:+	ONLY_REF_SPLICE	YES	2859	333	0	0.03	0.0101	0.0806	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	PC9_LUNG	0	0.03	0.0907	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	RP11-307P5.1--SASH1	1	7	RP11-307P5.1	4371	chr6:148054947:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	NO	227	8	0.03	0.5	0.0101	0.0705	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	PC9_LUNG	0.03	0.5	0.0806	TRUE	0	0	0	11	0	FALSE	ACH-000779
PC9_LUNG	RAB31--VAPA	2	2	RAB31	1280	chr18:9708441:+	VAPA	26849	chr18:9931807:+	ONLY_REF_SPLICE	YES	125	972	0.03	0	0.0202	0.0202	{Klijn_CCL:Pancreas=1},NEIGHBORS[51451],RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	PC9_LUNG	0	0.03	0.0404	FALSE	4	4	0	3	0	FALSE	ACH-000779
PC9_LUNG	RP11-120D5.1--MID1	2	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	9	32	0.31	0.11	0.0202	0.0202	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PC9_LUNG	0.11	0.31	0.0404	FALSE	0	48	1	163	0	FALSE	ACH-000779
PC9_LUNG	RP11-494M8.4--OVCH2	2	2	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0.0202	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	PC9_LUNG	1	1	0.0404	FALSE	32	0	0	22	0	FALSE	ACH-000779
PC9_LUNG	RPSAP52--HMGA2	2	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	2	555	0.67	0.01	0.0202	0.0202	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	PC9_LUNG	0.01	0.67	0.0404	FALSE	0	59	0	125	0	FALSE	ACH-000779
PC9_LUNG	CRYBG3--EPHA6	2	1	CRYBG3	18288	chr3:97614929:+	EPHA6	67009	chr3:97439105:+	ONLY_REF_SPLICE	YES	33	0	0.08	1	0.0202	0.0101	LOCAL_INVERSION:+,chr3:+:[69580],CRYBG3->chr3:97540884-97594132:+,chr3:97595819-97663810:+,crystallin_beta-gamma_domain_containing_3,EPHA6->EPH_receptor_A6,chr3:96533425-97471304:+	PC9_LUNG	0.08	1	0.0303	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	GABARAPL2--RAB38	2	1	GABARAPL2	2730	chr16:75602107:+	RAB38	11767	chr11:87847308:-	ONLY_REF_SPLICE	YES	544	68	0.01	0.04	0.0202	0.0101	GABARAPL2->GABA_type_A_receptor_associated_protein_like_2,chr16:75600249-75611779:+,RAB38->RAB38,_member_RAS_oncogene_family,chr11:87846410-87908635:-	PC9_LUNG	0.01	0.04	0.0303	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	KLHL29--UBXN2A	2	1	KLHL29	2672	chr2:23698537:+	UBXN2A	33490	chr2:24199839:+	ONLY_REF_SPLICE	YES	4	90	0.43	0.03	0.0202	0.0101	KLHL29->chr2:23608088-23931481:+,kelch_like_family_member_29,UBXN2A->UBX_domain_protein_2A,chr2:24150155-24227779:+	PC9_LUNG	0.03	0.43	0.0303	TRUE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	TNFAIP8--HSD17B4	1	5	TNFAIP8	6599	chr5:118691816:+	HSD17B4	49648	chr5:118970723:+	ONLY_REF_SPLICE	YES	67	0	0.08	1	0.0101	0.0504	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	PC9_LUNG	0.08	1	0.0605	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	AC079610.2--SPAG16	2	0	AC079610.2	1173	chr2:214148757:-	SPAG16	15817	chr2:214204887:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	LOCAL_INVERSION:-:+:[184],AC079610.2->chr2:214141276-214148929:-,SPAG16->chr2:214149113-215275225:+,sperm_associated_antigen_16	PC9_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	C17orf76-AS1--ITGB3BP	2	0	C17orf76-AS1	1593	chr17:16342728:+	ITGB3BP	24528	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	C17orf76-AS1->chr17:16342136-16381992:+,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	PC9_LUNG	1	1	0.0202	TRUE	0	0	0	4	0	TRUE	ACH-000779
PC9_LUNG	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	PC9_LUNG	1	1	0.0202	TRUE	2	8	0	24	0	FALSE	ACH-000779
PC9_LUNG	ELOVL1--LSR	2	0	ELOVL1	3840	chr1:43830857:-	LSR	10615	chr19:35741218:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	ELOVL1->ELOVL_fatty_acid_elongase_1,chr1:43829068-43833696:-,LSR->chr19:35739233-35758867:+,lipolysis_stimulated_lipoprotein_receptor	PC9_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	GPALPP1--NUFIP1	2	0	GPALPP1	1191	chr13:45563877:+	NUFIP1	24230	chr13:45540071:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	LOCAL_INVERSION:+:-:[69],GPALPP1->GPALPP_motifs_containing_1,chr13:45563687-45607746:+,NUFIP1->chr13:45513384-45563618:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_1	PC9_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	RCC1--RHOA	2	0	RCC1	2175	chr1:28834672:+	RHOA	22152	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	PC9_LUNG	1	1	0.0202	TRUE	0	1	0	6	0	TRUE	ACH-000779
PC9_LUNG	RP11-761E20.1--AMOT	2	0	RP11-761E20.1	1129	chrX:115085294:-	AMOT	9444	chrX:112075598:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	RP11-761E20.1->chrX:115033604-115085422:-,AMOT->Oncogene{Bushman},angiomotin,chrX:112017731-112084043:-	PC9_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	SAMD12--EXT1	2	0	SAMD12	2373	chr8:119592954:-	EXT1	23526	chr8:118849440:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	NEIGHBORS[77606],SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1	PC9_LUNG	1	1	0.0202	FALSE	0	4	0	6	0	FALSE	ACH-000779
PC9_LUNG	TNFAIP8--HSD17B4	1	3	TNFAIP8	1216	chr5:118604602:+	HSD17B4	49648	chr5:118970723:+	ONLY_REF_SPLICE	YES	27	0	0.13	1	0.0101	0.0302	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	PC9_LUNG	0.13	1	0.0403	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	TXNRD1--CHST11	1	3	TXNRD1	16815	chr12:104707095:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	YES	3234	289	0	0.01	0.0101	0.0302	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	PC9_LUNG	0	0.01	0.0403	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	EEF1G--DYNC1H1	1	2	EEF1G	4965	chr11:62338437:-	DYNC1H1	26474	chr14:102466326:+	ONLY_REF_SPLICE	YES	9627	183	0	0.02	0.0101	0.0202	EEF1G->chr11:62327073-62342401:-,eukaryotic_translation_elongation_factor_1_gamma,DYNC1H1->chr14:102430865-102517129:+,dynein_cytoplasmic_1_heavy_chain_1	PC9_LUNG	0	0.02	0.0303	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	PLEKHA7--RP11-90K6.1	1	2	PLEKHA7	1455	chr11:17035536:-	RP11-90K6.1	37669	chr3:112045369:+	ONLY_REF_SPLICE	YES	24	2	0.11	0.6	0.0101	0.0202	PLEKHA7->chr11:16799842-17035990:-,pleckstrin_homology_domain_containing_A7,RP11-90K6.1->chr3:112021325-112051638:+	PC9_LUNG	0.11	0.6	0.0303	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	10	17	0.23	0.15	0.0101	0.0202	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PC9_LUNG	0.15	0.23	0.0303	FALSE	0	23	1	67	0	FALSE	ACH-000779
PC9_LUNG	RP11-494M8.4--OVCH2	1	2	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0101	0.0202	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	PC9_LUNG	1	1	0.0303	FALSE	60	13	8	23	0	FALSE	ACH-000779
PC9_LUNG	BRWD1--FUS	1	1	BRWD1	4942	chr21:40670358:-	FUS	63811	chr16:31199646:+	ONLY_REF_SPLICE	NO	70	1121	0.03	0	0.0101	0.0101	BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	PC9_LUNG	0	0.03	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	CELF1--MTCH2	1	1	CELF1	1296	chr11:47586826:-	MTCH2	40751	chr11:47647293:-	ONLY_REF_SPLICE	YES	3	524	0.4	0	0.0101	0.0101	YOSHIHARA_TCGA_num_samples[BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[51746],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	PC9_LUNG	0	0.4	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	NO	53	151	0.04	0.01	0.0101	0.0101	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	PC9_LUNG	0.01	0.04	0.0202	FALSE	118	557	29	88	0	FALSE	ACH-000779
PC9_LUNG	CRYBG3--EPHA6	1	1	CRYBG3	19431	chr3:97617869:+	EPHA6	67009	chr3:97439105:+	ONLY_REF_SPLICE	YES	31	0	0.06	1	0.0101	0.0101	LOCAL_INVERSION:+,chr3:+:[69580],CRYBG3->chr3:97540884-97594132:+,chr3:97595819-97663810:+,crystallin_beta-gamma_domain_containing_3,EPHA6->EPH_receptor_A6,chr3:96533425-97471304:+	PC9_LUNG	0.06	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000779
PC9_LUNG	KLHL18--SETD2	1	1	KLHL18	1178	chr3:47324584:+	SETD2	51478	chr3:47061330:-	ONLY_REF_SPLICE	YES	87	130	0.02	0.02	0.0101	0.0101	KLHL18->chr3:47324407-47388306:+,kelch_like_family_member_18,SETD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SET_domain_containing_2,chr3:47057919-47205457:-	PC9_LUNG	0.02	0.02	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	MAP3K3--CCDC47	1	1	MAP3K3	12407	chr17:61762950:+	CCDC47	28695	chr17:61843554:-	ONLY_REF_SPLICE	YES	10	776	0.17	0	0.0101	0.0101	LOCAL_INVERSION:+:-:[48947],MAP3K3->chr17:61699775-61773663:+,mitogen-activated_protein_kinase_kinase_kinase_3,CCDC47->chr17:61822610-61853711:-,coiled-coil_domain_containing_47	PC9_LUNG	0	0.17	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	RAB1A--PPP3R1	1	1	RAB1A	1214	chr2:65357027:-	PPP3R1	18547	chr2:68415822:-	ONLY_REF_SPLICE	YES	1483	51	0	0.04	0.0101	0.0101	RAB1A->Oncogene{Bushman},RAB1A,_member_RAS_oncogene_family,chr2:65297835-65357240:-,PPP3R1->chr2:68405989-68483369:-,protein_phosphatase_3_regulatory_subunit_B,_alpha	PC9_LUNG	0	0.04	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	RAB31--VAPA	1	1	RAB31	1280	chr18:9708441:+	VAPA	33895	chr18:9950392:+	ONLY_REF_SPLICE	YES	125	926	0.02	0	0.0101	0.0101	{Klijn_CCL:Pancreas=1},NEIGHBORS[51451],RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	PC9_LUNG	0	0.02	0.0202	FALSE	1	1	0	1	0	FALSE	ACH-000779
PC9_LUNG	RAB31--VAPA	1	1	RAB31	7729	chr18:9792232:+	VAPA	33895	chr18:9950392:+	ONLY_REF_SPLICE	YES	161	926	0.01	0	0.0101	0.0101	{Klijn_CCL:Pancreas=1},NEIGHBORS[51451],RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	PC9_LUNG	0	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	RACGAP1--U2AF1	1	1	RACGAP1	8327	chr12:50410414:-	U2AF1	37194	chr21:44515853:-	ONLY_REF_SPLICE	NO	346	1352	0.01	0	0.0101	0.0101	RACGAP1->Rac_GTPase_activating_protein_1,chr12:50370706-50426919:-,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	PC9_LUNG	0	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	SPDL1--RARS	1	1	SPDL1	1256	chr5:169010893:+	RARS	20940	chr5:167915607:+	ONLY_REF_SPLICE	NO	64	12	0.03	0.14	0.0101	0.0101	SPDL1->chr5:169010638-169031782:+,spindle_apparatus_coiled-coil_protein_1,RARS->arginyl-tRNA_synthetase,chr5:167913450-167946304:+	PC9_LUNG	0.03	0.14	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000779
PC9_LUNG	UXS1--FHL2	1	1	UXS1	15666	chr2:106729102:-	FHL2	33526	chr2:106002997:-	ONLY_REF_SPLICE	YES	319	460	0.01	0	0.0101	0.0101	UXS1->UDP-glucuronate_decarboxylase_1,chr2:106709759-106810795:-,FHL2->Oncogene{Bushman},chr2:105974169-106054970:-,four_and_a_half_LIM_domains_2	PC9_LUNG	0	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000779
SNU407_LARGE_INTESTINE	TIMM23B--LINC00843	85	40	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9583	0.451	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU407_LARGE_INTESTINE	1	1	1.4093	TRUE	508	994	45	981	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-TA--MT-TC	67	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7554	0.0338	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU407_LARGE_INTESTINE	1	1	0.7892	FALSE	462	80	0	856	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	TIMM23--RP11-464F9.1	49	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	324	3	0.14	0.94	0.5525	0.0225	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU407_LARGE_INTESTINE	0.14	0.94	0.575	TRUE	519	3926	326	965	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	ZNF654--HMGB2	33	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3721	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU407_LARGE_INTESTINE	1	1	0.3721	TRUE	0	0	0	518	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	OR51S1--TP53I11	24	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2706	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU407_LARGE_INTESTINE	1	1	0.2706	TRUE	402	216	10	229	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	RP11-123O10.4--GRIP1	22	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.248	0.0338	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU407_LARGE_INTESTINE	1	1	0.2818	FALSE	416	2512	207	587	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	DOCK5--CDCA2	18	5	DOCK5	1229	chr8:25042466:+	CDCA2	83724	chr8:25360889:+	ONLY_REF_SPLICE	YES	13	52	0.64	0.31	0.2029	0.0564	NEIGHBORS[40915],DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5,CDCA2->cell_division_cycle_associated_2,chr8:25316513-25365436:+	SNU407_LARGE_INTESTINE	0.31	0.64	0.2593	FALSE	0	0	0	2	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	13	19	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1466	0.2142	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	1	1	0.3608	FALSE	209	205	15	279	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	SLC1A5--MT-ND4L	16	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2226	0	0.01	1	0.1804	0.0225	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU407_LARGE_INTESTINE	0.01	1	0.2029	FALSE	0	0	0	189	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	14	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	12344	1	0	0.94	0.1578	0.0338	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	0.94	0.1916	FALSE	230	193	14	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	HSPBP1--GRK5	14	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1578	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU407_LARGE_INTESTINE	1	1	0.1578	TRUE	1	39	0	134	39	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	10	10	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16494	3	0	0.87	0.1127	0.1127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	0.87	0.2254	FALSE	231	217	16	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-CO3--MT-ATP6	7	21	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	6	0.88	0.82	0.0789	0.2368	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU407_LARGE_INTESTINE	0.82	0.88	0.3157	FALSE	189	492	56	216	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	RCC1--RP11-74E22.6	12	0	RCC1	2175	chr1:28834672:+	RP11-74E22.6	18879	chr17:2591768:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1353	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RP11-74E22.6->chr17:2591767-2592254:+	SNU407_LARGE_INTESTINE	1	1	0.1353	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	MT-TA--MT-TC	10	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1127	0.0564	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU407_LARGE_INTESTINE	1	1	0.1691	FALSE	462	80	0	856	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	RP1-34H18.1--NAV3	10	4	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1127	0.0451	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SNU407_LARGE_INTESTINE	1	1	0.1578	TRUE	254	575	65	124	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	10	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12472	3	0	0.81	0.1127	0.0338	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	0.81	0.1465	FALSE	230	198	14	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	C15orf57--CBX3	8	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	95	37	0.16	0.33	0.0902	0.1127	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU407_LARGE_INTESTINE	0.16	0.33	0.2029	TRUE	267	562	48	632	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	C15orf57--CBX3	8	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	91	38	0.15	0.3	0.0902	0.0902	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU407_LARGE_INTESTINE	0.15	0.3	0.1804	TRUE	267	562	48	632	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	4	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14971	3	0	0.81	0.1015	0.0451	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	0.81	0.1466	FALSE	231	205	14	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1127	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU407_LARGE_INTESTINE	1	1	0.1127	TRUE	0	0	0	434	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	6	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18369	0	0	1	0.0789	0.0676	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	1	0.1465	FALSE	231	217	16	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	21	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	3	43	0.89	0.36	0.0338	0.2368	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU407_LARGE_INTESTINE	0.36	0.89	0.2706	FALSE	189	492	56	216	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	20	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.82	0.0338	0.2255	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU407_LARGE_INTESTINE	0.82	1	0.2593	FALSE	189	492	56	216	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	5	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0564	0.1353	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU407_LARGE_INTESTINE	0.94	1	0.1917	FALSE	515	4851	409	746	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	6	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	20412	721	0	0.02	0.0676	0.0676	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	0.02	0.1352	FALSE	231	217	16	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	13	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	15996	0	0	1	0.0451	0.1466	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	1	0.1917	FALSE	231	217	16	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-CO3--MT-ATP6	7	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU407_LARGE_INTESTINE	1	1	0.0789	FALSE	189	492	56	216	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND3--MT-ATP8	7	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	1	1	0.0789	FALSE	351	233	23	137	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	8	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	16394	1533	0	0.01	0.0564	0.0902	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	0.01	0.1466	FALSE	231	217	16	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	15	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13335	54	0	0.25	0.0338	0.1691	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	0.25	0.2029	FALSE	231	215	16	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	6	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	18349	0	0	1	0.0564	0.0676	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	1	0.124	FALSE	231	217	16	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	5	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	20431	495	0	0.02	0.0564	0.0564	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	0.02	0.1128	FALSE	231	217	16	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	13	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13870	54	0	0.23	0.0338	0.1466	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	0.23	0.1804	FALSE	231	217	16	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	8	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	16420	899	0	0.01	0.0451	0.0902	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	0.01	0.1353	FALSE	231	217	16	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	12	MT-ND4	1833	chrM:11592:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	15863	0	0	1	0.0338	0.1353	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	1	0.1691	FALSE	231	217	16	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	NPM1P24--SET	6	0	NPM1P24	1533	chr10:74677760:-	SET	12301	chr9:131456196:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0676	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU407_LARGE_INTESTINE	1	1	0.0676	TRUE	0	0	0	434	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	5	4	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0564	0.0451	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU407_LARGE_INTESTINE	0.82	1	0.1015	FALSE	81	155	12	160	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	3	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0338	0.1353	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU407_LARGE_INTESTINE	1	1	0.1691	FALSE	467	2173	244	435	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	11	MT-CO3	1033	chrM:9239:+	MT-ATP6	4768	chrM:8510:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0.124	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU407_LARGE_INTESTINE	1	1	0.1578	FALSE	189	492	56	216	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	11	MT-ND4	1767	chrM:11526:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	16420	0	0	1	0.0338	0.124	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	1	0.1578	FALSE	231	217	16	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-TA--MT-TC	4	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0.0676	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU407_LARGE_INTESTINE	1	1	0.1127	FALSE	462	80	0	856	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	4	4	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0451	0.0451	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU407_LARGE_INTESTINE	0.8	1	0.0902	FALSE	81	155	12	160	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	SLC7A5--ATP5G2	5	0	SLC7A5	8052	chr16:87871490:-	ATP5G2	21321	chr12:54066421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0564	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	SNU407_LARGE_INTESTINE	1	1	0.0564	TRUE	0	0	0	7	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	3	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	YES	12946	0	0	1	0.0451	0.0338	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	1	0.0789	FALSE	231	204	14	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	6	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19102	54	0	0.14	0.0338	0.0676	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	0.14	0.1014	FALSE	231	217	16	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	BRI3BP--UBC	4	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0451	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU407_LARGE_INTESTINE	1	1	0.0451	TRUE	5	99	5	34	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	4	MT-ND4	1295	chrM:11054:+	MT-ATP8	5413	chrM:8400:+	INCL_NON_REF_SPLICE	YES	16333	0	0	1	0.0338	0.0451	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	1	0.0789	FALSE	231	205	14	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU407_LARGE_INTESTINE	1	1	0.0451	FALSE	462	80	0	856	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	CTNNA1--MATR3	3	3	CTNNA1	27885	chr5:138240130:+	MATR3	42739	chr5:138611810:+	ONLY_REF_SPLICE	YES	91	9	0.06	0.4	0.0338	0.0338	GTEx&tcga_normals:1/3694=0.03%,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,MATR3->chr5:138609441-138667360:+,matrin_3	SNU407_LARGE_INTESTINE	0.06	0.4	0.0676	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12486	54	0	0.1	0.0338	0.0338	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	0.1	0.0676	FALSE	230	198	14	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	13076	0	0	1	0.0338	0.0338	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	1	0.0676	FALSE	231	204	14	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	2	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	12643	495	0	0.01	0.0338	0.0225	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	0	0.01	0.0563	FALSE	231	204	14	283	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	RP11-120D5.1--MID1	2	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	8	0.88	0.47	0.0225	0.0564	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU407_LARGE_INTESTINE	0.47	0.88	0.0789	FALSE	16	356	14	466	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	CTD-2337A12.1--CAST	3	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU407_LARGE_INTESTINE	1	1	0.0338	TRUE	347	1186	183	220	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU407_LARGE_INTESTINE	1	1	0.0338	TRUE	0	0	0	434	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	PHLDA1--MT-ATP8	3	0	PHLDA1	4283	chr12:76424430:-	MT-ATP8	12601	chrM:8480:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	PHLDA1->chr12:76419227-76427712:-,pleckstrin_homology_like_domain_family_A_member_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU407_LARGE_INTESTINE	1	1	0.0338	FALSE	0	0	0	3	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	RP11-108K3.1--GLDN	2	3	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0.0338	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU407_LARGE_INTESTINE	1	1	0.0563	FALSE	0	19	0	46	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	SNHG5--RNF149	2	1	SNHG5	1780	chr6:86387672:-	RNF149	20975	chr2:101888206:-	ONLY_REF_SPLICE	YES	678	13	0	0.19	0.0225	0.0113	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	SNU407_LARGE_INTESTINE	0	0.19	0.0338	FALSE	0	0	0	2	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	CHTOP--ILF2	2	0	CHTOP	1295	chr1:153606819:+	ILF2	17998	chr1:153636950:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LOCAL_INVERSION:+:-:[15730],CHTOP->chr1:153606525-153618782:+,chromatin_target_of_PRMT1,ILF2->chr1:153634512-153643524:-,interleukin_enhancer_binding_factor_2	SNU407_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	CTNNB1--CCDC77	2	0	CTNNB1	16512	chr3:41280845:+	CCDC77	27049	chr12:514677:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,CCDC77->chr12:498439-551811:+,coiled-coil_domain_containing_77	SNU407_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	DYM--SMAD2	2	0	DYM	3143	chr18:46956625:-	SMAD2	44201	chr18:45423180:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin,SMAD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_2,chr18:45357922-45457515:-	SNU407_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	GBA--EFNA1	2	0	GBA	2795	chr1:155210877:-	EFNA1	15492	chr1:155103815:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LOCAL_INVERSION:-:+:[96910],GBA->chr1:155204243-155214490:-,glucosylceramidase_beta,EFNA1->chr1:155099936-155107333:+,ephrin_A1	SNU407_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	NPNT--PPA2	2	0	NPNT	3050	chr4:106819158:+	PPA2	38003	chr4:106320321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Thyroid=5,Artery_-_Tibial=2,Artery_-_Aorta=2,Lung=1},NPNT->chr4:106815932-106925184:+,nephronectin,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	SNU407_LARGE_INTESTINE	1	1	0.0225	TRUE	1	5	1	3	1	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	NRF1--UBE2H	2	0	NRF1	1111	chr7:129251665:+	UBE2H	25675	chr7:129520811:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[73650],NRF1->Oncogene{Bushman},chr7:129251555-129396922:+,nuclear_respiratory_factor_1,UBE2H->chr7:129470572-129592789:-,ubiquitin_conjugating_enzyme_E2_H	SNU407_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	TADA1--RP11-568K15.1	2	0	TADA1	1168	chr1:166845397:-	RP11-568K15.1	12371	chr1:178006936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TADA1->chr1:166825747-166845564:-,transcriptional_adaptor_1,RP11-568K15.1->chr1:177975271-178007085:-	SNU407_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	WBP2NL--RANGAP1	2	0	WBP2NL	1156	chr22:42394884:+	RANGAP1	25624	chr22:41664160:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	WBP2NL->WBP2_N-terminal_like,chr22:42394729-42454460:+,RANGAP1->Ran_GTPase_activating_protein_1,chr22:41641615-41682255:-	SNU407_LARGE_INTESTINE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	CTNNA1--MATR3	1	3	CTNNA1	27885	chr5:138240130:+	MATR3	43769	chr5:138614016:+	ONLY_REF_SPLICE	YES	91	23	0.04	0.15	0.0113	0.0338	GTEx&tcga_normals:1/3694=0.03%,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,MATR3->chr5:138609441-138667360:+,matrin_3	SNU407_LARGE_INTESTINE	0.04	0.15	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000955
SNU407_LARGE_INTESTINE	RP11-108K3.1--GLDN	1	3	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0113	0.0338	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU407_LARGE_INTESTINE	1	1	0.0451	FALSE	0	14	0	30	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	DNAJC25--UGCG	1	2	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	NO	78	22	0.04	0.12	0.0113	0.0225	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	SNU407_LARGE_INTESTINE	0.04	0.12	0.0338	TRUE	50	73	10	50	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0113	0.0225	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU407_LARGE_INTESTINE	1	1	0.0338	FALSE	1	20	0	46	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0113	0.0225	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU407_LARGE_INTESTINE	1	1	0.0338	FALSE	0	30	1	55	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	3349	121	0	0.02	0.0113	0.0225	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SNU407_LARGE_INTESTINE	0	0.02	0.0338	FALSE	6	50	7	115	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	HOXB3--HOXB9	1	1	HOXB3	1433	chr17:46681842:-	HOXB9	22377	chr17:46700497:-	ONLY_REF_SPLICE	NO	38	337	0.05	0.01	0.0113	0.0113	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[16244],HOXB3->chr17:46626232-46682274:-,homeobox_B3,HOXB9->chr17:46698518-46703839:-,homeobox_B9	SNU407_LARGE_INTESTINE	0.01	0.05	0.0226	FALSE	0	0	0	3	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	NOC4L--FBRSL1	1	1	NOC4L	5448	chr12:132633440:+	FBRSL1	23658	chr12:133144067:+	ONLY_REF_SPLICE	YES	64	30	0.03	0.06	0.0113	0.0113	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	SNU407_LARGE_INTESTINE	0.03	0.06	0.0226	TRUE	16	9	0	6	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	REEP3--TSPAN15	1	1	REEP3	2288	chr10:65326170:+	TSPAN15	17424	chr10:71243447:+	ONLY_REF_SPLICE	NO	34	585	0.06	0	0.0113	0.0113	REEP3->chr10:65281123-65384883:+,receptor_accessory_protein_3,TSPAN15->chr10:71211229-71267425:+,tetraspanin_15	SNU407_LARGE_INTESTINE	0	0.06	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	RP13-188A5.1--KLF8	1	1	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	2	1	0.5	0.67	0.0113	0.0113	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	SNU407_LARGE_INTESTINE	0.5	0.67	0.0226	TRUE	10	78	6	20	0	FALSE	ACH-000955
SNU407_LARGE_INTESTINE	SAMD12--EXT1	1	1	SAMD12	2373	chr8:119592954:-	EXT1	23526	chr8:118849440:-	ONLY_REF_SPLICE	YES	62	151	0.03	0.01	0.0113	0.0113	NEIGHBORS[77606],SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1	SNU407_LARGE_INTESTINE	0.01	0.03	0.0226	FALSE	0	4	0	6	0	FALSE	ACH-000955
NCIH1563_LUNG	TIMM23B--LINC00843	98	10	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8224	0.0839	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1563_LUNG	0.99	1	0.9063	TRUE	508	994	45	981	0	FALSE	ACH-000892
NCIH1563_LUNG	AP3B1--LHFPL2	58	21	AP3B1	3467	chr5:77536686:-	LHFPL2	52140	chr5:77806221:-	ONLY_REF_SPLICE	YES	131	73	0.38	0.52	0.4867	0.1762	AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-,LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2	NCIH1563_LUNG	0.38	0.52	0.6629	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	MT-ND6--MT-TE	57	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4784	0.042	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1563_LUNG	1	1	0.5204	FALSE	499	1288	110	792	0	FALSE	ACH-000892
NCIH1563_LUNG	TIMM23--RP11-464F9.1	58	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	213	4	0.22	0.94	0.4867	0.0084	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1563_LUNG	0.22	0.94	0.4951	TRUE	519	3926	326	965	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-TA--MT-TC	46	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.386	0.0336	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1563_LUNG	1	1	0.4196	FALSE	462	80	0	856	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ND4L	5	155	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	6	2	0.96	0.99	0.042	1.3008	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1563_LUNG	0.96	0.99	1.3428	FALSE	344	826	44	306	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ND4L	3	158	MT-ND4	1263	chrM:11022:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	14	0	0.92	1	0.0252	1.326	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1563_LUNG	0.92	1	1.3512	FALSE	344	827	44	306	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ND4L	3	154	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	6	2	0.96	0.99	0.0252	1.2924	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1563_LUNG	0.96	0.99	1.3176	FALSE	344	826	44	306	0	FALSE	ACH-000892
NCIH1563_LUNG	NUDT4--PIK3R1	37	8	NUDT4	1539	chr12:93772197:+	PIK3R1	19726	chr5:67569218:+	ONLY_REF_SPLICE	YES	28	3	0.62	0.94	0.3105	0.0671	NUDT4->chr12:93771659-93797024:+,nudix_hydrolase_4,PIK3R1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:67511548-67597649:+,phosphoinositide-3-kinase_regulatory_subunit_1	NCIH1563_LUNG	0.62	0.94	0.3776	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ND4L	5	123	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	6	2	0.96	0.98	0.042	1.0322	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1563_LUNG	0.96	0.98	1.0742	FALSE	344	826	44	306	0	FALSE	ACH-000892
NCIH1563_LUNG	PITPNM2--ARHGAP32	31	13	PITPNM2	7375	chr12:123519060:-	ARHGAP32	37110	chr11:128994789:-	ONLY_REF_SPLICE	YES	12	5	0.79	0.9	0.2602	0.1091	PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2,ARHGAP32->Rho_GTPase_activating_protein_32,chr11:128834955-129149219:-	NCIH1563_LUNG	0.79	0.9	0.3693	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	CTD-2337A12.1--CAST	31	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	211	1	0.14	0.2602	0.0168	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH1563_LUNG	0.14	1	0.277	TRUE	347	1186	183	220	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND6--MT-TE	24	19	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.2014	0.1595	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1563_LUNG	0.96	1	0.3609	FALSE	499	1288	110	792	0	FALSE	ACH-000892
NCIH1563_LUNG	RP11-123O10.4--GRIP1	28	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.235	0.0252	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1563_LUNG	1	1	0.2602	FALSE	416	2512	207	587	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ND4L	3	102	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	2	0.95	0.98	0.0252	0.856	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1563_LUNG	0.95	0.98	0.8812	FALSE	344	821	44	306	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND6--MT-TE	25	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2098	0.0336	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1563_LUNG	1	1	0.2434	FALSE	499	1288	110	792	0	FALSE	ACH-000892
NCIH1563_LUNG	RAB3GAP1--MGAT5	22	10	RAB3GAP1	7756	chr2:135851263:+	MGAT5	40569	chr2:135093788:+	ONLY_REF_SPLICE	YES	71	28	0.31	0.53	0.1846	0.0839	RAB3GAP1->RAB3_GTPase_activating_protein_catalytic_subunit_1,chr2:135809835-135933964:+,MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase	NCIH1563_LUNG	0.31	0.53	0.2685	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	EEA1--C5orf50	22	6	EEA1	26894	chr12:93181643:-	C5orf50	42961	chr5:171217234:+	ONLY_REF_SPLICE	YES	34	0	0.45	1	0.1846	0.0504	EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,C5orf50->chr5:171212876-171221602:+	NCIH1563_LUNG	0.45	1	0.235	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ND4L	8	49	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8075	1	0.01	0.98	0.0671	0.4112	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1563_LUNG	0.01	0.98	0.4783	FALSE	328	800	43	304	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND5--MT-ATP8	16	4	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5	0	0.8	1	0.1343	0.0336	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	0.8	1	0.1679	FALSE	43	37	8	105	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ND4L	4	49	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	332	1	0.14	0.98	0.0336	0.4112	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1563_LUNG	0.14	0.98	0.4448	FALSE	344	827	44	306	0	FALSE	ACH-000892
NCIH1563_LUNG	RP11-254I22.1--CTD-2337A12.1	15	2	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1259	0.0168	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	NCIH1563_LUNG	1	1	0.1427	TRUE	6	15	3	35	0	FALSE	ACH-000892
NCIH1563_LUNG	RP11-820L6.1--RP11-166D19.1	12	11	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1007	0.0923	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	NCIH1563_LUNG	1	1	0.193	FALSE	65	26	15	9	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ND4L	4	41	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0336	0.3441	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1563_LUNG	0.98	1	0.3777	FALSE	344	821	44	306	0	FALSE	ACH-000892
NCIH1563_LUNG	FBXL7--RP1-167G20.1	13	2	FBXL7	3619	chr5:15616181:+	RP1-167G20.1	18878	chr5:16373945:-	ONLY_REF_SPLICE	YES	11	0	0.58	1	0.1091	0.0168	FBXL7->F-box_and_leucine-rich_repeat_protein_7,Oncogene{Bushman},chr5:15500305-15939900:+,RP1-167G20.1->chr5:16373470-16440190:-	NCIH1563_LUNG	0.58	1	0.1259	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	DSCR3--TTC3	13	1	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	32	119	0.3	0.11	0.1091	0.0084	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH1563_LUNG	0.11	0.3	0.1175	TRUE	0	9	0	44	1	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ATP8	13	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	7675	5	0	0.74	0.1091	0.0084	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	0	0.74	0.1175	FALSE	230	193	14	283	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND6--MT-TE	5	30	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.042	0.2518	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1563_LUNG	0.95	1	0.2938	FALSE	499	1288	110	792	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-TA--MT-TC	11	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0923	0.0252	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1563_LUNG	1	1	0.1175	FALSE	462	80	0	856	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ND4L	3	32	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8914	1	0	0.97	0.0252	0.2685	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1563_LUNG	0	0.97	0.2937	FALSE	343	822	44	305	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ND4L	4	28	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	11	1	0.74	0.97	0.0336	0.235	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1563_LUNG	0.74	0.97	0.2686	FALSE	344	826	44	306	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ND4L	3	32	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	217	1	0.14	0.97	0.0252	0.2685	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1563_LUNG	0.14	0.97	0.2937	FALSE	344	827	44	306	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND5--MT-ATP8	11	0	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0923	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	1	1	0.0923	FALSE	43	37	8	105	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ATP6--MT-CO1	10	3	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	8201	17777	0	0	0.0839	0.0252	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1563_LUNG	0	0	0.1091	FALSE	183	104	9	328	0	FALSE	ACH-000892
NCIH1563_LUNG	EEA1--C5orf50	10	1	EEA1	25711	chr12:93192668:-	C5orf50	42961	chr5:171217234:+	ONLY_REF_SPLICE	YES	23	0	0.32	1	0.0839	0.0084	EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,C5orf50->chr5:171212876-171221602:+	NCIH1563_LUNG	0.32	1	0.0923	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	RP11-254I22.1--CTD-2337A12.1	10	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0839	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	NCIH1563_LUNG	1	1	0.0839	TRUE	4	2	0	28	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ATP6--MT-CO1	9	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9759	18067	0	0	0.0755	0.0252	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1563_LUNG	0	0	0.1007	FALSE	183	104	9	328	0	FALSE	ACH-000892
NCIH1563_LUNG	NRIP1--AF127936.7	9	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.5	1	0.0755	0.0168	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1563_LUNG	0.5	1	0.0923	FALSE	125	705	46	456	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND6--MT-TE	3	23	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0252	0.193	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1563_LUNG	1	1	0.2182	FALSE	499	1288	110	792	0	FALSE	ACH-000892
NCIH1563_LUNG	PKM--PPIA	7	4	PKM	16753	chr15:72494877:-	PPIA	23268	chr7:44836286:+	INCL_NON_REF_SPLICE	YES	2992	0	0	1	0.0587	0.0336	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	NCIH1563_LUNG	0	1	0.0923	FALSE	0	0	0	18	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ATP6--MT-CO1	7	3	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8197	18067	0	0	0.0587	0.0252	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1563_LUNG	0	0	0.0839	FALSE	183	104	9	328	0	FALSE	ACH-000892
NCIH1563_LUNG	RP11-820L6.1--RP11-166D19.1	5	11	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.042	0.0923	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	NCIH1563_LUNG	0.94	1	0.1343	FALSE	65	26	15	9	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ND4L	3	18	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	4	0	0.84	1	0.0252	0.1511	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1563_LUNG	0.84	1	0.1763	FALSE	344	821	44	306	0	FALSE	ACH-000892
NCIH1563_LUNG	ZNF720--FUS	7	2	ZNF720	6169	chr16:31765221:+	FUS	27120	chr16:31199646:+	ONLY_REF_SPLICE	YES	55	206	0.14	0.04	0.0587	0.0168	ZNF720->chr16:31724550-31806190:+,zinc_finger_protein_720,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH1563_LUNG	0.04	0.14	0.0755	TRUE	0	0	0	1	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ATP8	7	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7608	6	0	0.57	0.0587	0.0084	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	0	0.57	0.0671	FALSE	230	198	14	283	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ATP8	7	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7675	6	0	0.57	0.0587	0.0084	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	0	0.57	0.0671	FALSE	230	193	14	283	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND6--MT-TE	5	9	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.042	0.0755	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1563_LUNG	0.93	1	0.1175	FALSE	499	1288	110	792	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ATP6--MT-CO1	6	4	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	7706	16226	0	0	0.0504	0.0336	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1563_LUNG	0	0	0.084	FALSE	183	104	9	328	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ATP6--MT-CO1	6	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	9759	0	0	1	0.0504	0.0336	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1563_LUNG	0	1	0.084	FALSE	182	97	9	327	0	FALSE	ACH-000892
NCIH1563_LUNG	RP11-155G15.2--RP11-1E3.1	6	4	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0504	0.0336	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH1563_LUNG	1	1	0.084	FALSE	46	201	11	112	0	FALSE	ACH-000892
NCIH1563_LUNG	RP11-254I22.1--CTD-2337A12.1	7	0	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0587	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	NCIH1563_LUNG	1	1	0.0587	TRUE	0	7	2	11	5	FALSE	ACH-000892
NCIH1563_LUNG	ALDOA--MT-ND4	6	2	ALDOA	9161	chr16:30078933:+	MT-ND4	15475	chrM:11228:+	INCL_NON_REF_SPLICE	YES	5853	9728	0	0	0.0504	0.0168	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1563_LUNG	0	0	0.0672	FALSE	0	0	0	6	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ATP8	6	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8708	6	0	0.57	0.0504	0.0168	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	0	0.57	0.0672	FALSE	231	205	14	283	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ATP8	6	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	8785	6	0	0.57	0.0504	0.0168	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	0	0.57	0.0672	FALSE	231	217	16	283	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND5--MT-ATP8	5	6	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.042	0.0504	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	1	1	0.0924	FALSE	43	37	8	105	0	FALSE	ACH-000892
NCIH1563_LUNG	RP11-820L6.1--RP11-166D19.1	5	6	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.042	0.0504	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	NCIH1563_LUNG	1	1	0.0924	FALSE	40	10	5	8	0	FALSE	ACH-000892
NCIH1563_LUNG	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	996	0	0.01	1	0.0504	0.0084	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1563_LUNG	0.01	1	0.0588	FALSE	13	9	0	364	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ATP8	6	1	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	8907	1473	0	0	0.0504	0.0084	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	0	0	0.0588	FALSE	231	217	16	283	0	FALSE	ACH-000892
NCIH1563_LUNG	NRIP1--AF127936.7	6	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0504	0.0084	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1563_LUNG	0.78	1	0.0588	FALSE	292	1546	117	613	0	FALSE	ACH-000892
NCIH1563_LUNG	RP1-34H18.1--NAV3	6	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0504	0.0084	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH1563_LUNG	1	1	0.0588	TRUE	254	575	65	124	0	FALSE	ACH-000892
NCIH1563_LUNG	CTD-2152M20.2--GOLPH3	6	0	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0504	0	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	NCIH1563_LUNG	1	1	0.0504	TRUE	10	26	2	24	0	FALSE	ACH-000892
NCIH1563_LUNG	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0504	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1563_LUNG	1	1	0.0504	FALSE	13	9	0	364	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0504	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1563_LUNG	1	1	0.0504	FALSE	499	1288	110	792	0	FALSE	ACH-000892
NCIH1563_LUNG	LGALS3BP--KRT18	5	2	LGALS3BP	4113	chr17:76972107:-	KRT18	11877	chr12:53342918:+	INCL_NON_REF_SPLICE	YES	2277	2	0	0.78	0.042	0.0168	LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,KRT18->chr12:53342655-53346685:+,keratin_18	NCIH1563_LUNG	0	0.78	0.0588	FALSE	0	0	0	9	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	11005	739	0	0.01	0.042	0.0168	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	0	0.01	0.0588	FALSE	231	217	16	283	0	FALSE	ACH-000892
NCIH1563_LUNG	NRIP1--AF127936.7	5	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.32	1	0.042	0.0168	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1563_LUNG	0.32	1	0.0588	FALSE	164	806	69	479	0	FALSE	ACH-000892
NCIH1563_LUNG	PRR16--CTD-2334D19.1	5	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	31	0	0.18	1	0.042	0.0168	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH1563_LUNG	0.18	1	0.0588	FALSE	56	216	12	147	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.042	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1563_LUNG	1	1	0.042	FALSE	344	821	44	306	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ATP6--MT-CO1	4	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8245	18188	0	0	0.0336	0.0252	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1563_LUNG	0	0	0.0588	FALSE	183	104	9	328	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ATP6--MT-CO1	3	7	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	4881	16362	0	0	0.0252	0.0587	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1563_LUNG	0	0	0.0839	FALSE	183	104	9	328	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ATP8	4	3	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	9917	0	0	1	0.0336	0.0252	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	0	1	0.0588	FALSE	231	217	16	283	0	FALSE	ACH-000892
NCIH1563_LUNG	RP11-820L6.1--RP11-166D19.1	3	7	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	14416	chr11:121987031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0.0587	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	NCIH1563_LUNG	1	1	0.0839	FALSE	3	0	0	3	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ATP6--MT-CO1	3	6	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2877	18465	0	0	0.0252	0.0504	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1563_LUNG	0	0	0.0756	FALSE	183	104	9	328	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	9929	0	0	1	0.0336	0.0168	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	0	1	0.0504	FALSE	231	217	16	283	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ATP6--MT-CO1	3	5	MT-ATP6	1295	chrM:8821:+	MT-CO1	5307	chrM:6529:+	INCL_NON_REF_SPLICE	NO	13083	16380	0	0	0.0252	0.042	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1563_LUNG	0	0	0.0672	FALSE	183	104	9	328	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ATP8	4	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	7692	34	0	0.13	0.0336	0.0084	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	0	0.13	0.042	FALSE	230	198	14	283	0	FALSE	ACH-000892
NCIH1563_LUNG	MARCH6--FBXL7	4	0	MARCH6	1215	chr5:10354029:+	FBXL7	42106	chr5:15616092:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	GTEx&tcga_normals:1/3694=0.03%,MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6,FBXL7->F-box_and_leucine-rich_repeat_protein_7,Oncogene{Bushman},chr5:15500305-15939900:+	NCIH1563_LUNG	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1563_LUNG	1	1	0.0336	FALSE	344	821	44	306	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1046	chrM:14628:-	MT-TE	4575	chrM:14693:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1563_LUNG	1	1	0.0336	FALSE	499	1288	110	792	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1563_LUNG	1	1	0.0336	FALSE	462	80	0	856	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ATP6--MT-CO1	3	3	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	8197	15789	0	0	0.0252	0.0252	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1563_LUNG	0	0	0.0504	FALSE	183	104	9	328	0	FALSE	ACH-000892
NCIH1563_LUNG	IGFBP4--S100A6	3	2	IGFBP4	3668	chr17:38610269:+	S100A6	9247	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	3439	2	0	0.71	0.0252	0.0168	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	NCIH1563_LUNG	0	0.71	0.042	FALSE	0	0	0	4	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	8785	844	0	0.01	0.0252	0.0168	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	0	0.01	0.042	FALSE	231	217	16	283	0	FALSE	ACH-000892
NCIH1563_LUNG	RP11-820L6.1--RP11-166D19.1	3	2	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	26134	chr11:121937142:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0.0168	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	NCIH1563_LUNG	1	1	0.042	FALSE	17	5	3	5	0	FALSE	ACH-000892
NCIH1563_LUNG	RP11-820L6.1--RP11-166D19.1	2	6	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0168	0.0504	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	NCIH1563_LUNG	0.89	1	0.0672	FALSE	40	10	5	8	0	FALSE	ACH-000892
NCIH1563_LUNG	ALDOA--MT-ND4	3	1	ALDOA	8806	chr16:30078578:+	MT-ND4	15308	chrM:11061:+	INCL_NON_REF_SPLICE	YES	5722	8659	0	0	0.0252	0.0084	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1563_LUNG	0	0	0.0336	FALSE	0	0	0	6	0	FALSE	ACH-000892
NCIH1563_LUNG	B4GALT1--BAG1	3	1	B4GALT1	1599	chr9:33166756:-	BAG1	16811	chr9:33262828:-	ONLY_REF_SPLICE	YES	976	637	0	0.01	0.0252	0.0084	GTEx_v2:{count=2;pct=0.02%;dist=Liver=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Cervix=3},LOCAL_REARRANGEMENT:-:[80464],B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,BAG1->BCL2_associated_athanogene_1,Oncogene{Bushman},chr9:33247818-33264761:-	NCIH1563_LUNG	0	0.01	0.0336	FALSE	0	5	1	5	3	FALSE	ACH-000892
NCIH1563_LUNG	LASP1--MT-ND4L	3	1	LASP1	12948	chr17:37075343:+	MT-ND4L	18644	chrM:10485:+	INCL_NON_REF_SPLICE	YES	569	0	0.01	1	0.0252	0.0084	LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1563_LUNG	0.01	1	0.0336	FALSE	0	0	0	7	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7597	6	0	0.4	0.0252	0.0084	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	0	0.4	0.0336	FALSE	230	193	14	283	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1222	chrM:10981:+	MT-ATP8	5491	chrM:8478:+	INCL_NON_REF_SPLICE	YES	7720	319	0	0.01	0.0252	0.0084	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	0	0.01	0.0336	FALSE	231	204	14	283	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND5--MT-ATP8	3	1	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	NO	2748	6	0	0.4	0.0252	0.0084	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	0	0.4	0.0336	FALSE	43	37	8	105	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND5--MT-ATP8	3	1	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	2978	0	0	1	0.0252	0.0084	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1563_LUNG	0	1	0.0336	FALSE	43	37	8	105	0	FALSE	ACH-000892
NCIH1563_LUNG	RP11-820L6.1--RP11-166D19.1	3	1	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	26134	chr11:121937142:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0.0084	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	NCIH1563_LUNG	1	1	0.0336	FALSE	10	1	1	4	0	FALSE	ACH-000892
NCIH1563_LUNG	FBXL7--MARCH11	3	0	FBXL7	3619	chr5:15616181:+	MARCH11	15298	chr5:16177990:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	FBXL7->F-box_and_leucine-rich_repeat_protein_7,Oncogene{Bushman},chr5:15500305-15939900:+,MARCH11->chr5:16067248-16180871:-,membrane_associated_ring-CH-type_finger_11	NCIH1563_LUNG	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0252	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1563_LUNG	1	1	0.0252	FALSE	344	821	44	306	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0252	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1563_LUNG	1	1	0.0252	FALSE	499	1288	110	792	0	FALSE	ACH-000892
NCIH1563_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0252	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1563_LUNG	1	1	0.0252	FALSE	499	1288	110	792	0	FALSE	ACH-000892
NCIH1563_LUNG	POLR2L--MT-ND4L	3	0	POLR2L	2292	chr11:840321:-	MT-ND4L	7144	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0252	0	POLR2L->chr11:837356-842545:-,polymerase_(RNA)_II_subunit_L,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1563_LUNG	1	1	0.0252	FALSE	0	0	0	4	0	FALSE	ACH-000892
NCIH1563_LUNG	RP11-123O10.4--GRIP1	2	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0.0168	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1563_LUNG	1	1	0.0336	FALSE	93	270	15	244	0	FALSE	ACH-000892
NCIH1563_LUNG	RP11-820L6.1--RP11-166D19.1	2	2	RP11-820L6.1	9139	chr11:122073472:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0168	0.0168	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	NCIH1563_LUNG	0.5	1	0.0336	FALSE	2	2	0	1	0	FALSE	ACH-000892
NCIH1563_LUNG	ZNF720--FUS	2	2	ZNF720	6169	chr16:31765221:+	FUS	27918	chr16:31200444:+	ONLY_REF_SPLICE	YES	55	372	0.07	0.01	0.0168	0.0168	ZNF720->chr16:31724550-31806190:+,zinc_finger_protein_720,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH1563_LUNG	0.01	0.07	0.0336	FALSE	0	0	0	1	0	FALSE	ACH-000892
NCIH1563_LUNG	ASPH--CHMP1A	2	1	ASPH	27900	chr8:62531537:-	CHMP1A	53636	chr16:89713739:-	ONLY_REF_SPLICE	YES	350	143	0.01	0.02	0.0168	0.0084	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH1563_LUNG	0.01	0.02	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000892
NCIH1563_LUNG	RAB3GAP1--MGAT5	2	1	RAB3GAP1	2297	chr2:135815656:+	MGAT5	40569	chr2:135093788:+	ONLY_REF_SPLICE	YES	108	28	0.03	0.1	0.0168	0.0084	RAB3GAP1->RAB3_GTPase_activating_protein_catalytic_subunit_1,chr2:135809835-135933964:+,MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase	NCIH1563_LUNG	0.03	0.1	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-000892
NCIH1563_LUNG	AP3B1--LHFPL2	2	0	AP3B1	3467	chr5:77536686:-	LHFPL2	54983	chr5:77784976:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-,LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2	NCIH1563_LUNG	1	1	0.0168	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	CHD6--GNAS	2	0	CHD6	1155	chr20:40246979:-	GNAS	67953	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1563_LUNG	1	1	0.0168	TRUE	0	1	0	2	0	TRUE	ACH-000892
NCIH1563_LUNG	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	3267	chr5:95654248:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH1563_LUNG	1	1	0.0168	TRUE	0	4	0	5	0	FALSE	ACH-000892
NCIH1563_LUNG	FBXL7--MARCH11	2	0	FBXL7	3619	chr5:15616181:+	MARCH11	17649	chr5:16067902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	FBXL7->F-box_and_leucine-rich_repeat_protein_7,Oncogene{Bushman},chr5:15500305-15939900:+,MARCH11->chr5:16067248-16180871:-,membrane_associated_ring-CH-type_finger_11	NCIH1563_LUNG	1	1	0.0168	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	KIF18A--BDNF	2	0	KIF18A	1245	chr11:28129611:-	BDNF	33116	chr11:27680132:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	KIF18A->chr11:28042167-28129855:-,kinesin_family_member_18A,BDNF->brain-derived_neurotrophic_factor,chr11:27676440-27743605:-	NCIH1563_LUNG	1	1	0.0168	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	NBAS--FAM49A	2	0	NBAS	5992	chr2:15691617:-	FAM49A	68667	chr2:16747035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NCIH1563_LUNG	1	1	0.0168	TRUE	0	0	0	5	0	TRUE	ACH-000892
NCIH1563_LUNG	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	7741	chr5:95644428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	NCIH1563_LUNG	1	1	0.0168	TRUE	0	0	0	4	0	FALSE	ACH-000892
NCIH1563_LUNG	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	NCIH1563_LUNG	1	1	0.0168	TRUE	0	2	1	13	0	FALSE	ACH-000892
NCIH1563_LUNG	TEKT4P2--GNAS	2	0	TEKT4P2	2129	chr21:9966322:-	GNAS	26807	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	TEKT4P2->chr21:9907190-9968585:-,tektin_4_pseudogene_2,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1563_LUNG	1	1	0.0168	TRUE	0	0	0	1	0	TRUE	ACH-000892
NCIH1563_LUNG	ZIC5--PCCA	2	0	ZIC5	2783	chr13:100622381:-	PCCA	32312	chr13:100982815:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	ZIC5->Zic_family_member_5,chr13:100615218-100624163:-,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	NCIH1563_LUNG	1	1	0.0168	TRUE	0	0	0	2	0	TRUE	ACH-000892
NCIH1563_LUNG	RP11-820L6.1--RP11-166D19.1	1	2	RP11-820L6.1	6183	chr11:122162992:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	10	1	0.23	0.75	0.0084	0.0168	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	NCIH1563_LUNG	0.23	0.75	0.0252	FALSE	43	23	12	6	0	FALSE	ACH-000892
NCIH1563_LUNG	ASPH--CHMP1A	1	1	ASPH	8053	chr8:62593527:-	CHMP1A	53636	chr16:89713739:-	ONLY_REF_SPLICE	YES	1385	143	0	0.01	0.0084	0.0084	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH1563_LUNG	0	0.01	0.0168	FALSE	0	1	0	2	0	FALSE	ACH-000892
NCIH1563_LUNG	BDNF--HSD17B12	1	1	BDNF	6018	chr11:27721711:-	HSD17B12	29747	chr11:43772461:+	ONLY_REF_SPLICE	YES	129	93	0.02	0.02	0.0084	0.0084	BDNF->brain-derived_neurotrophic_factor,chr11:27676440-27743605:-,HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12	NCIH1563_LUNG	0.02	0.02	0.0168	TRUE	0	0	0	1	0	FALSE	ACH-000892
NCIH1563_LUNG	GINM1--HSD17B4	1	1	GINM1	4729	chr6:149901126:+	HSD17B4	15893	chr5:118809603:+	ONLY_REF_SPLICE	YES	238	340	0.01	0.01	0.0084	0.0084	GINM1->chr6:149887430-149912884:+,glycoprotein_integral_membrane_1,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	NCIH1563_LUNG	0.01	0.01	0.0168	FALSE	0	0	0	1	0	FALSE	ACH-000892
HCC44_LUNG	TIMM23B--LINC00843	81	58	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.98	1.0207	0.7309	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC44_LUNG	0.98	1	1.7516	TRUE	508	994	45	981	0	FALSE	ACH-000667
HCC44_LUNG	ASAP1--RNF111	76	38	ASAP1	3357	chr8:131414131:-	RNF111	57220	chr15:59358963:+	ONLY_REF_SPLICE	YES	23	15	0.83	0.88	0.9577	0.4789	ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,RNF111->chr15:59157374-59389618:+,ring_finger_protein_111	HCC44_LUNG	0.83	0.88	1.4366	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	MT-ND6--MT-TE	65	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.96	1	0.8191	0.0126	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC44_LUNG	0.96	1	0.8317	FALSE	499	1288	110	792	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND6--MT-TE	54	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6805	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC44_LUNG	1	1	0.6805	FALSE	499	1288	110	792	0	FALSE	ACH-000667
HCC44_LUNG	MT-TA--MT-TC	53	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6679	0.0504	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC44_LUNG	1	1	0.7183	FALSE	462	80	0	856	0	FALSE	ACH-000667
HCC44_LUNG	TIMM23--RP11-464F9.1	48	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	285	5	0.16	0.92	0.6049	0.0882	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC44_LUNG	0.16	0.92	0.6931	TRUE	519	3926	326	965	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	36	41	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	22	0	0.78	1	0.4536	0.5167	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.78	1	0.9703	FALSE	344	821	44	306	0	FALSE	ACH-000667
HCC44_LUNG	KLC1--APOPT1	39	13	KLC1	2407	chr14:104095831:+	APOPT1	26770	chr14:104037960:+	ONLY_REF_SPLICE	YES	28	120	0.65	0.3	0.4915	0.1638	PROTCLUST,NEIGHBORS_OVERLAP:+:+:[44561],KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+	HCC44_LUNG	0.3	0.65	0.6553	FALSE	0	0	0	2	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	39	2	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	222	0	0.16	1	0.4915	0.0252	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.16	1	0.5167	FALSE	344	827	44	306	0	FALSE	ACH-000667
HCC44_LUNG	BRWD3--POF1B	33	7	BRWD3	2150	chrX:80064038:-	POF1B	64340	chrX:84537323:-	ONLY_REF_SPLICE	YES	7	0	0.85	1	0.4158	0.0882	BRWD3->Oncogene{Bushman},bromodomain_and_WD_repeat_domain_containing_3,chrX:79926353-80065187:-,POF1B->chrX:84532402-84634748:-,premature_ovarian_failure,_1B	HCC44_LUNG	0.85	1	0.504	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	15	72	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	80	0	0.52	1	0.189	0.9073	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.52	1	1.0963	FALSE	344	826	44	306	0	FALSE	ACH-000667
HCC44_LUNG	UBE2R2--PRSS3	28	9	UBE2R2	1368	chr9:33817932:+	PRSS3	16387	chr9:33796641:+	ONLY_REF_SPLICE	YES	59	2	0.39	0.95	0.3528	0.1134	LOCAL_REARRANGEMENT:+:[18335],UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2,PRSS3->chr9:33750515-33799230:+,protease,_serine_3	HCC44_LUNG	0.39	0.95	0.4662	TRUE	0	1	0	1	0	TRUE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	28	4	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	40504	0	0	1	0.3528	0.0504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	1	0.4032	FALSE	231	217	16	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	18	44	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	18990	0	0	1	0.2268	0.5545	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0	1	0.7813	FALSE	344	827	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-TA--MT-TC	29	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3654	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC44_LUNG	1	1	0.3654	FALSE	462	80	0	856	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	25	10	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	3115	0	0.01	1	0.315	0.126	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.01	1	0.441	FALSE	344	827	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	9	70	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	51	0	0.61	1	0.1134	0.8821	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.61	1	0.9955	FALSE	344	826	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	7	73	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	57	2	0.58	0.98	0.0882	0.9199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.58	0.98	1.0081	FALSE	344	826	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND6--MT-TE	25	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.315	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC44_LUNG	1	1	0.315	FALSE	499	1288	110	792	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	24	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	31136	6	0	0.81	0.3024	0.0252	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	0.81	0.3276	FALSE	230	193	14	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	4	76	MT-ND4	1287	chrM:11046:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	214	0	0.27	1	0.0504	0.9577	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.27	1	1.0081	FALSE	344	827	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	5	71	MT-ND4	1148	chrM:10907:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	YES	55	0	0.58	1	0.063	0.8947	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.58	1	0.9577	FALSE	344	826	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	4	74	MT-ND4	1222	chrM:10981:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	86	0	0.48	1	0.0504	0.9325	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.48	1	0.9829	FALSE	344	827	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	4	72	MT-ND4	1192	chrM:10951:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	YES	80	0	0.49	1	0.0504	0.9073	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.49	1	0.9577	FALSE	344	826	44	306	0	FALSE	ACH-000667
HCC44_LUNG	PLXDC1--TAF13	22	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2772	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCC44_LUNG	1	1	0.2772	TRUE	7	10	0	216	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	3	74	MT-ND4	1197	chrM:10956:+	MT-ND4L	5432	chrM:10523:+	INCL_NON_REF_SPLICE	YES	88	0	0.47	1	0.0378	0.9325	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.47	1	0.9703	FALSE	344	826	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	3	73	MT-ND4	1168	chrM:10927:+	MT-ND4L	5460	chrM:10551:+	INCL_NON_REF_SPLICE	YES	68	0	0.53	1	0.0378	0.9199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.53	1	0.9577	FALSE	344	826	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	3	73	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	87	0	0.47	1	0.0378	0.9199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.47	1	0.9577	FALSE	344	826	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-CO2--MT-ND1	19	6	MT-CO2	1229	chrM:7814:+	MT-ND1	4890	chrM:3512:+	INCL_NON_REF_SPLICE	YES	27653	16169	0	0	0.2394	0.0756	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC44_LUNG	0	0	0.315	FALSE	12	14	1	5	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	20	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	31136	11	0	0.67	0.252	0.0252	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	0.67	0.2772	FALSE	230	193	14	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	15	20	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	2717	0	0.01	1	0.189	0.252	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.01	1	0.441	FALSE	344	827	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	5	56	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	24	0	0.72	1	0.063	0.7057	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.72	1	0.7687	FALSE	344	826	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-CO2--MT-ND1	17	1	MT-CO2	1536	chrM:8121:+	MT-ND1	5211	chrM:3833:+	INCL_NON_REF_SPLICE	YES	10595	26795	0	0	0.2142	0.0126	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC44_LUNG	0	0	0.2268	FALSE	12	14	1	5	0	FALSE	ACH-000667
HCC44_LUNG	MT-TA--MT-TN	16	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2016	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC44_LUNG	1	1	0.2016	FALSE	369	2501	205	193	0	FALSE	ACH-000667
HCC44_LUNG	MT-TA--MT-TN	16	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2016	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC44_LUNG	1	1	0.2016	FALSE	369	2501	205	193	0	FALSE	ACH-000667
HCC44_LUNG	C15orf57--CBX3	13	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	24	16	0.48	0.58	0.1638	0.1134	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC44_LUNG	0.48	0.58	0.2772	TRUE	267	562	48	632	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND6--MT-TE	13	4	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.85	1	0.1638	0.0504	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC44_LUNG	0.85	1	0.2142	FALSE	499	1288	110	792	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	13	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	31390	276	0	0.05	0.1638	0.0252	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	0.05	0.189	FALSE	230	198	14	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	4	38	MT-ND4	1216	chrM:10975:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	83	0	0.34	1	0.0504	0.4789	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.34	1	0.5293	FALSE	344	826	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	13	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1638	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	1	1	0.1638	FALSE	344	821	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND5--MT-ND6	13	0	MT-ND5	2795	chrM:14131:+	MT-ND6	6322	chrM:14164:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1638	0	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HCC44_LUNG	1	1	0.1638	FALSE	26	124	4	93	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND1--MT-TL1	11	6	MT-ND1	1342	chrM:3648:+	MT-TL1	5013	chrM:3286:+	INCL_NON_REF_SPLICE	YES	97	0	0.15	1	0.1386	0.0756	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	HCC44_LUNG	0.15	1	0.2142	FALSE	210	95	5	49	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	12	1	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	87	0	0.13	1	0.1512	0.0126	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.13	1	0.1638	FALSE	344	826	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-TA--MT-TN	6	25	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0756	0.315	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC44_LUNG	1	1	0.3906	FALSE	369	2501	205	193	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND3--MT-ATP8	12	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1512	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	1	1	0.1512	FALSE	351	233	23	137	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	3	36	MT-ND4	1301	chrM:11060:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	247	0	0.14	1	0.0378	0.4536	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.14	1	0.4914	FALSE	344	827	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	3	36	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	228	0	0.15	1	0.0378	0.4536	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.15	1	0.4914	FALSE	344	827	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-TA--MT-TY	12	0	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1512	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC44_LUNG	1	1	0.1512	FALSE	13	214	14	42	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	3	35	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	273	0	0.12	1	0.0378	0.441	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.12	1	0.4788	FALSE	344	827	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-TA--MT-TN	11	2	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1386	0.0252	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC44_LUNG	1	1	0.1638	FALSE	369	2501	205	193	0	FALSE	ACH-000667
HCC44_LUNG	FBXO11--AC018462.2	10	3	FBXO11	21841	chr2:48036297:-	AC018462.2	33955	chr2:62317936:-	ONLY_REF_SPLICE	YES	83	0	0.14	1	0.126	0.0378	FBXO11->F-box_protein_11,chr2:48016455-48132932:-,AC018462.2->chr2:62296582-62374016:-	HCC44_LUNG	0.14	1	0.1638	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	C15orf57--CBX3	9	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	24	17	0.37	0.45	0.1134	0.063	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC44_LUNG	0.37	0.45	0.1764	TRUE	267	562	48	632	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	7	12	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	40792	0	0	1	0.0882	0.1512	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	1	0.2394	FALSE	231	217	16	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	6	15	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	38159	0	0	1	0.0756	0.189	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	1	0.2646	FALSE	231	217	16	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND1--MT-TL1	9	1	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.1134	0.0126	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	HCC44_LUNG	0.83	1	0.126	FALSE	210	95	5	49	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	7	9	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1741	0	0.01	1	0.0882	0.1134	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.01	1	0.2016	FALSE	344	827	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	6	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	36432	276	0	0.06	0.0756	0.1512	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	0.06	0.2268	FALSE	231	217	16	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	4	20	MT-ND4	2283	chrM:12042:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	138	0	0.15	1	0.0504	0.252	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0.15	1	0.3024	FALSE	213	207	15	279	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	7	8	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	40638	11	0	0.58	0.0882	0.1008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	0.58	0.189	FALSE	231	217	16	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	8	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	39515	2333	0	0.01	0.1008	0.0504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	0.01	0.1512	FALSE	231	217	16	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	6	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	36432	532	0	0.03	0.0756	0.1512	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	0.03	0.2268	FALSE	231	217	16	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	7	8	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	83	0	0.15	1	0.0882	0.1008	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.15	1	0.189	FALSE	344	826	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	6	11	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	87	0	0.16	1	0.0756	0.1386	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.16	1	0.2142	FALSE	344	826	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-CO2--MT-ND1	7	6	MT-CO2	1223	chrM:7808:+	MT-ND1	4884	chrM:3506:+	INCL_NON_REF_SPLICE	NO	26552	15436	0	0	0.0882	0.0756	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC44_LUNG	0	0	0.1638	FALSE	12	14	1	5	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND6--MT-TE	8	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1008	0.0126	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC44_LUNG	1	1	0.1134	FALSE	499	1288	110	792	0	FALSE	ACH-000667
HCC44_LUNG	MT-TW--MT-ND2	7	5	MT-TW	1004	chrM:5515:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	151	1	0.07	0.0882	0.063	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC44_LUNG	0.07	1	0.1512	FALSE	14	0	0	19	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND1--MT-TL1	5	12	MT-ND1	1278	chrM:3584:+	MT-TL1	4942	chrM:3215:+	INCL_NON_REF_SPLICE	YES	90	0	0.16	1	0.063	0.1512	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	HCC44_LUNG	0.16	1	0.2142	FALSE	210	95	5	49	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	6	8	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	39515	276	0	0.05	0.0756	0.1008	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	0.05	0.1764	FALSE	231	217	16	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	4	16	MT-ND4	2301	chrM:12060:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	31	0	0.39	1	0.0504	0.2016	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0.39	1	0.252	FALSE	209	205	15	279	0	FALSE	ACH-000667
HCC44_LUNG	MT-TA--MT-TC	7	3	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0882	0.0378	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC44_LUNG	1	1	0.126	FALSE	462	80	0	856	0	FALSE	ACH-000667
HCC44_LUNG	MT-TA--MT-TN	3	19	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0.2394	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC44_LUNG	1	1	0.2772	FALSE	369	2501	205	193	0	FALSE	ACH-000667
HCC44_LUNG	MT-CO2--MT-ND1	6	6	MT-CO2	1224	chrM:7809:+	MT-ND1	4885	chrM:3507:+	INCL_NON_REF_SPLICE	YES	26737	15701	0	0	0.0756	0.0756	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC44_LUNG	0	0	0.1512	FALSE	12	14	1	5	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	7	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	31357	11	0	0.45	0.0882	0.0252	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	0.45	0.1134	FALSE	230	198	14	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	6	6	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	40610	2036	0	0.01	0.0756	0.0756	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	0.01	0.1512	FALSE	231	217	16	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-CO2--MT-ND1	5	9	MT-CO2	1550	chrM:8135:+	MT-ND1	4899	chrM:3521:+	INCL_NON_REF_SPLICE	YES	7308	16963	0	0	0.063	0.1134	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC44_LUNG	0	0	0.1764	FALSE	12	14	1	5	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND6--MT-TE	7	1	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0882	0.0126	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC44_LUNG	0.8	1	0.1008	FALSE	499	1288	110	792	0	FALSE	ACH-000667
HCC44_LUNG	MT-TW--MT-ND2	6	5	MT-TW	1005	chrM:5516:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	151	1	0.07	0.0756	0.063	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC44_LUNG	0.07	1	0.1386	FALSE	14	0	0	19	0	FALSE	ACH-000667
HCC44_LUNG	MT-CO2--MT-ND1	5	8	MT-CO2	1266	chrM:7851:+	MT-ND1	4693	chrM:3315:+	INCL_NON_REF_SPLICE	YES	31507	0	0	1	0.063	0.1008	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC44_LUNG	0	1	0.1638	FALSE	12	14	1	5	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	3	16	MT-ND4	2255	chrM:12014:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	4104	0	0	1	0.0378	0.2016	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	1	0.2394	FALSE	216	209	16	281	0	FALSE	ACH-000667
HCC44_LUNG	POLR1A--AFF3	4	12	POLR1A	18201	chr2:86276007:-	AFF3	66522	chr2:100210751:-	ONLY_REF_SPLICE	YES	46	0	0.26	1	0.0504	0.1512	{Klijn_CCL:Lung=1},POLR1A->chr2:86247339-86333278:-,polymerase_(RNA)_I_subunit_A,AFF3->AF4/FMR2_family_member_3,Oncogene{Bushman},chr2:100162323-100759201:-	HCC44_LUNG	0.26	1	0.2016	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	SMURF2--RP13-104F24.1	6	4	SMURF2	13242	chr17:62567916:-	RP13-104F24.1	31389	chr17:62750772:-	ONLY_REF_SPLICE	YES	76	38	0.12	0.21	0.0756	0.0504	LOCAL_REARRANGEMENT:-:[87850],SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,RP13-104F24.1->chr17:62746036-62754721:-	HCC44_LUNG	0.12	0.21	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	6	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	31136	0	0	1	0.0756	0.0378	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	1	0.1134	FALSE	230	193	14	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	3	15	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	NO	39268	0	0	1	0.0378	0.189	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	1	0.2268	FALSE	231	217	16	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	4	11	MT-ND4	1201	chrM:10960:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	88	0	0.15	1	0.0504	0.1386	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.15	1	0.189	FALSE	344	826	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-TA--MT-TC	5	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.063	0.0756	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC44_LUNG	1	1	0.1386	FALSE	462	80	0	856	0	FALSE	ACH-000667
HCC44_LUNG	PTPLB--STK3	6	2	PTPLB	3921	chr3:123286609:-	STK3	28032	chr8:99787047:-	ONLY_REF_SPLICE	YES	54	26	0.13	0.24	0.0756	0.0252	PTPLB->chr3:123209667-123304032:-,STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3	HCC44_LUNG	0.13	0.24	0.1008	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	MT-CO2--MT-ND1	3	13	MT-CO2	1396	chrM:7981:+	MT-ND1	4700	chrM:3322:+	INCL_NON_REF_SPLICE	NO	31599	0	0	1	0.0378	0.1638	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC44_LUNG	0	1	0.2016	FALSE	12	14	1	5	0	FALSE	ACH-000667
HCC44_LUNG	MT-TA--MT-TC	5	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.063	0.063	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC44_LUNG	1	1	0.126	FALSE	462	80	0	856	0	FALSE	ACH-000667
HCC44_LUNG	MT-TW--MT-ND2	5	5	MT-TW	1005	chrM:5516:+	MT-ND2	4878	chrM:5279:+	INCL_NON_REF_SPLICE	YES	0	151	1	0.06	0.063	0.063	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC44_LUNG	0.06	1	0.126	FALSE	14	0	0	19	0	FALSE	ACH-000667
HCC44_LUNG	PVT1--CASC8	4	9	PVT1	1202	chr8:128806980:+	CASC8	35426	chr8:128335399:-	ONLY_REF_SPLICE	YES	623	0	0.02	1	0.0504	0.1134	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC44_LUNG	0.02	1	0.1638	TRUE	0	0	0	5	0	FALSE	ACH-000667
HCC44_LUNG	PVT1--CASC8	4	8	PVT1	2457	chr8:128808254:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	709	1	0.02	0.92	0.0504	0.1008	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC44_LUNG	0.02	0.92	0.1512	TRUE	0	1	0	4	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND1--MT-TL1	4	7	MT-ND1	1155	chrM:3461:+	MT-TL1	4983	chrM:3256:+	INCL_NON_REF_SPLICE	YES	25	0	0.31	1	0.0504	0.0882	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	HCC44_LUNG	0.31	1	0.1386	FALSE	210	95	5	49	0	FALSE	ACH-000667
HCC44_LUNG	PVT1--CASC8	4	7	PVT1	1202	chr8:128806980:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	623	1	0.02	0.92	0.0504	0.0882	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC44_LUNG	0.02	0.92	0.1386	TRUE	0	2	0	5	2	TRUE	ACH-000667
HCC44_LUNG	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.0504	0.0882	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC44_LUNG	0.85	1	0.1386	FALSE	515	4851	409	746	0	FALSE	ACH-000667
HCC44_LUNG	DNMBP--CRTAC1	5	2	DNMBP	6352	chr10:101714971:-	CRTAC1	32247	chr10:99696123:-	ONLY_REF_SPLICE	YES	34	0	0.17	1	0.063	0.0252	DNMBP->chr10:101635334-101769676:-,dynamin_binding_protein,CRTAC1->cartilage_acidic_protein_1,chr10:99624757-99790585:-	HCC44_LUNG	0.17	1	0.0882	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	35978	11	0	0.39	0.063	0.0252	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	0.39	0.0882	FALSE	231	205	14	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND5--MT-ND6	5	2	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	3	5147	0.7	0	0.063	0.0252	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HCC44_LUNG	0	0.7	0.0882	FALSE	26	124	4	93	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	4	5	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	44355	1203	0	0.01	0.0504	0.063	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	0.01	0.1134	FALSE	231	217	16	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-CO2--MT-ND1	4	4	MT-CO2	1216	chrM:7801:+	MT-ND1	4982	chrM:3604:+	INCL_NON_REF_SPLICE	YES	25798	23066	0	0	0.0504	0.0504	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC44_LUNG	0	0	0.1008	FALSE	12	14	1	5	0	FALSE	ACH-000667
HCC44_LUNG	MT-CO2--MT-ND1	3	8	MT-CO2	1253	chrM:7838:+	MT-ND1	4683	chrM:3305:+	INCL_NON_REF_SPLICE	YES	30367	0	0	1	0.0378	0.1008	LOCAL_REARRANGEMENT:+:[3324],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC44_LUNG	0	1	0.1386	FALSE	12	14	1	5	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	3	8	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	63	0	0.15	1	0.0378	0.1008	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.15	1	0.1386	FALSE	344	826	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.063	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	1	1	0.063	FALSE	344	821	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	4	4	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	16	0	0.33	1	0.0504	0.0504	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.33	1	0.1008	FALSE	344	821	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-TA--MT-TN	5	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.063	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC44_LUNG	1	1	0.063	FALSE	369	2501	205	193	0	FALSE	ACH-000667
HCC44_LUNG	MT-TA--MT-TY	5	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.063	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC44_LUNG	1	1	0.063	FALSE	13	214	14	42	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND6--MT-TE	4	3	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.64	1	0.0504	0.0378	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC44_LUNG	0.64	1	0.0882	FALSE	499	1288	110	792	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	40772	923	0	0.01	0.0504	0.0252	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	0.01	0.0756	FALSE	231	217	16	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	37916	276	0	0.02	0.0504	0.0252	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	0.02	0.0756	FALSE	231	205	14	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	44348	532	0	0.02	0.0378	0.0756	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	0.02	0.1134	FALSE	231	217	16	283	0	FALSE	ACH-000667
HCC44_LUNG	UBE2R2--PRSS3	2	10	UBE2R2	1368	chr9:33817932:+	PRSS3	13412	chr9:33762055:+	ONLY_REF_SPLICE	YES	59	0	0.17	1	0.0252	0.126	LOCAL_REARRANGEMENT:+:[18335],UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2,PRSS3->chr9:33750515-33799230:+,protease,_serine_3	HCC44_LUNG	0.17	1	0.1512	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	AKR1C3--RP11-499O7.7	4	1	AKR1C3	1263	chr10:5077808:+	RP11-499O7.7	20064	chr10:5038229:+	ONLY_REF_SPLICE	YES	179	9	0.03	0.36	0.0504	0.0126	LOCAL_REARRANGEMENT:+:[37974],AKR1C3->Oncogene{Bushman},aldo-keto_reductase_family_1,_member_C3,chr10:5077546-5149878:+,RP11-499O7.7->chr10:5037680-5039572:+	HCC44_LUNG	0.03	0.36	0.063	TRUE	0	0	0	1	0	FALSE	ACH-000667
HCC44_LUNG	KLC1--APOPT1	4	1	KLC1	2407	chr14:104095831:+	APOPT1	31803	chr14:104053611:+	ONLY_REF_SPLICE	YES	28	338	0.15	0.01	0.0504	0.0126	PROTCLUST,NEIGHBORS_OVERLAP:+:+:[44561],KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+	HCC44_LUNG	0.01	0.15	0.063	FALSE	0	0	0	3	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND6--MT-TE	3	5	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	NO	3	0	0.73	1	0.0378	0.063	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC44_LUNG	0.73	1	0.1008	FALSE	499	1288	110	792	0	FALSE	ACH-000667
HCC44_LUNG	MT-TA--MT-TN	3	5	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0.063	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC44_LUNG	1	1	0.1008	FALSE	369	2501	205	193	0	FALSE	ACH-000667
HCC44_LUNG	MT-TW--MT-ND2	3	5	MT-TW	1004	chrM:5515:+	MT-ND2	4879	chrM:5280:+	INCL_NON_REF_SPLICE	YES	0	151	1	0.05	0.0378	0.063	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC44_LUNG	0.05	1	0.1008	FALSE	14	0	0	19	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND3--MT-ATP8	4	0	MT-ND3	1094	chrM:10152:+	MT-ATP8	4474	chrM:8493:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0504	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	1	1	0.0504	FALSE	351	233	23	137	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1394	chrM:11153:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	40511	0	0	1	0.0378	0.0504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	1	0.0882	FALSE	231	217	16	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	3	4	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	80	0	0.08	1	0.0378	0.0504	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	0.08	1	0.0882	FALSE	344	826	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0504	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC44_LUNG	1	1	0.0504	FALSE	499	1288	110	792	0	FALSE	ACH-000667
HCC44_LUNG	MT-TW--MT-ND2	4	0	MT-TW	1005	chrM:5516:+	MT-ND2	5001	chrM:5402:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0504	0	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC44_LUNG	1	1	0.0504	FALSE	14	0	0	19	0	FALSE	ACH-000667
HCC44_LUNG	NFX1--BAG1	3	4	NFX1	10047	chr9:33319125:+	BAG1	33714	chr9:33262828:-	ONLY_REF_SPLICE	YES	110	148	0.06	0.05	0.0378	0.0504	{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[25748],NFX1->chr9:33290509-33371155:+,nuclear_transcription_factor,_X-box_binding_1,BAG1->BCL2_associated_athanogene_1,Oncogene{Bushman},chr9:33247818-33264761:-	HCC44_LUNG	0.05	0.06	0.0882	TRUE	0	0	0	1	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND1--MT-TL1	3	3	MT-ND1	1263	chrM:3569:+	MT-TL1	5019	chrM:3292:+	INCL_NON_REF_SPLICE	YES	56	0	0.1	1	0.0378	0.0378	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	HCC44_LUNG	0.1	1	0.0756	FALSE	210	95	5	49	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND1--MT-TL1	3	3	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	36	0	0.14	1	0.0378	0.0378	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	HCC44_LUNG	0.14	1	0.0756	FALSE	210	95	5	49	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND6--MT-TE	3	3	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0378	0.0378	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC44_LUNG	0.75	1	0.0756	FALSE	499	1288	110	792	0	FALSE	ACH-000667
HCC44_LUNG	PVT1--CASC8	1	11	PVT1	1202	chr8:128806980:+	CASC8	34291	chr8:128433208:-	ONLY_REF_SPLICE	YES	623	0	0.02	1	0.0126	0.1386	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC44_LUNG	0.02	1	0.1512	TRUE	0	1	0	2	1	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1369	chrM:11128:+	MT-ATP8	5476	chrM:8463:+	INCL_NON_REF_SPLICE	YES	39838	5	0	0.5	0.0378	0.0252	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	0.5	0.063	FALSE	231	216	16	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1116	chrM:10875:+	MT-ATP8	5453	chrM:8440:+	INCL_NON_REF_SPLICE	YES	19974	0	0	1	0.0378	0.0252	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC44_LUNG	0	1	0.063	FALSE	230	193	14	283	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	1	1	0.0378	FALSE	344	821	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1007	chrM:10766:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC44_LUNG	1	1	0.0378	FALSE	344	821	44	306	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC44_LUNG	1	1	0.0378	FALSE	499	1288	110	792	0	FALSE	ACH-000667
HCC44_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC44_LUNG	1	1	0.0378	FALSE	499	1288	110	792	0	FALSE	ACH-000667
HCC44_LUNG	MT-TA--MT-TY	3	0	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC44_LUNG	1	1	0.0378	FALSE	13	214	14	42	0	FALSE	ACH-000667
HCC44_LUNG	MT-TA--MT-TY	3	0	MT-TA	1021	chrM:5635:-	MT-TY	4077	chrM:5884:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC44_LUNG	1	1	0.0378	FALSE	13	214	14	42	0	FALSE	ACH-000667
HCC44_LUNG	MYC--PVT1	3	0	MYC	2190	chr8:128748869:+	PVT1	28218	chr8:129082406:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0378	0	NEIGHBORS[53105],MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	HCC44_LUNG	1	1	0.0378	FALSE	0	0	0	1	0	FALSE	ACH-000667
HCC44_LUNG	AKR1C3--RP11-499O7.7	2	1	AKR1C3	4866	chr10:5123093:+	RP11-499O7.7	20064	chr10:5038229:+	ONLY_REF_SPLICE	YES	201	9	0.01	0.25	0.0252	0.0126	LOCAL_REARRANGEMENT:+:[37974],AKR1C3->Oncogene{Bushman},aldo-keto_reductase_family_1,_member_C3,chr10:5077546-5149878:+,RP11-499O7.7->chr10:5037680-5039572:+	HCC44_LUNG	0.01	0.25	0.0378	FALSE	0	0	0	1	0	FALSE	ACH-000667
HCC44_LUNG	ASAP1--RNF111	1	5	ASAP1	3357	chr8:131414131:-	RNF111	58540	chr15:59368153:+	ONLY_REF_SPLICE	NO	23	99	0.21	0.06	0.0126	0.063	ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,RNF111->chr15:59157374-59389618:+,ring_finger_protein_111	HCC44_LUNG	0.06	0.21	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	GON4L--ARHGEF2	2	1	GON4L	14515	chr1:155774740:-	ARHGEF2	72654	chr1:155917806:-	ONLY_REF_SPLICE	YES	43	103	0.07	0.03	0.0252	0.0126	LOCAL_REARRANGEMENT:-:[87439],GON4L->chr1:155719508-155829191:-,gon-4_like,ARHGEF2->Oncogene{Bushman},Rho/Rac_guanine_nucleotide_exchange_factor_2,chr1:155916630-155976861:-	HCC44_LUNG	0.03	0.07	0.0378	TRUE	0	0	0	1	0	FALSE	ACH-000667
HCC44_LUNG	BRIX1--LRRC8A	2	0	BRIX1	1522	chr5:34916002:+	LRRC8A	20466	chr9:131678375:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	BRIX1->BRX1,_biogenesis_of_ribosomes,chr5:34915481-34926101:+,LRRC8A->chr9:131644391-131680318:+,leucine-rich_repeat_containing_8_family_member_A	HCC44_LUNG	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	CEP89--B3GNTL1	2	0	CEP89	20626	chr19:33392151:-	B3GNTL1	29867	chr17:81006661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	CEP89->centrosomal_protein_89,chr19:33369902-33462897:-,B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-	HCC44_LUNG	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	COL4A5--CHMP1A	2	0	COL4A5	33572	chrX:107869579:+	CHMP1A	60337	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	GTEx_v2:{count=1;pct=0.01%;dist=Bladder=1},COL4A5->chrX:107683074-107940775:+,collagen_type_IV_alpha_5,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HCC44_LUNG	1	1	0.0252	TRUE	0	1	0	1	0	TRUE	ACH-000667
HCC44_LUNG	DDHD1--HMGN4	2	0	DDHD1	4498	chr14:53570401:-	HMGN4	29697	chr6:26545355:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	DDHD1->DDHD_domain_containing_1,chr14:53510686-53620000:-,HMGN4->chr6:26538633-26546482:+,high_mobility_group_nucleosomal_binding_domain_4	HCC44_LUNG	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	MINK1--FAM3A	2	0	MINK1	17304	chr17:4800108:+	FAM3A	21983	chrX:153744136:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	MINK1->chr17:4736683-4801356:+,misshapen_like_kinase_1,FAM3A->chrX:153733350-153744566:-,family_with_sequence_similarity_3_member_A	HCC44_LUNG	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	NHP2L1--XRCC6	2	0	NHP2L1	2186	chr22:42084798:-	XRCC6	17752	chr22:42042900:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	LOCAL_INVERSION:-:+:[9890],NHP2L1->chr22:42069934-42086508:-,XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+	HCC44_LUNG	1	1	0.0252	TRUE	0	0	0	2	0	TRUE	ACH-000667
HCC44_LUNG	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC44_LUNG	1	1	0.0252	FALSE	16	356	14	466	0	FALSE	ACH-000667
HCC44_LUNG	TRIO--ZNF141	2	0	TRIO	65422	chr5:14502766:+	ZNF141	84571	chr4:376884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,ZNF141->chr4:331603-378653:+,zinc_finger_protein_141	HCC44_LUNG	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	U2SURP--AC005562.1	2	0	U2SURP	14940	chr3:142741504:+	AC005562.1	51216	chr17:28960116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+,AC005562.1->chr17:28903482-28999807:+	HCC44_LUNG	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	RP11-115J23.1--RP11-22P4.1	1	2	RP11-115J23.1	2304	chr11:28763455:+	RP11-22P4.1	13665	chr11:28445846:+	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0126	0.0252	RP11-115J23.1->chr11:28724162-29085368:+,RP11-22P4.1->chr11:28373654-28548588:+	HCC44_LUNG	0.3	1	0.0378	TRUE	0	0	0	1	0	TRUE	ACH-000667
HCC44_LUNG	C17orf76-AS1--CKAP5	1	1	C17orf76-AS1	1882	chr17:16343017:+	CKAP5	35097	chr11:46800149:-	ONLY_REF_SPLICE	YES	1818	112	0	0.02	0.0126	0.0126	C17orf76-AS1->chr17:16342136-16381992:+,CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5	HCC44_LUNG	0	0.02	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000667
HCC44_LUNG	GRAMD4--MIB2	1	1	GRAMD4	18768	chr22:47071449:+	MIB2	31066	chr1:1558811:+	ONLY_REF_SPLICE	YES	36	31	0.05	0.06	0.0126	0.0126	GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+,MIB2->Oncogene{Bushman},chr1:1550795-1565990:+,mindbomb_E3_ubiquitin_protein_ligase_2	HCC44_LUNG	0.05	0.06	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-000667
HCC44_LUNG	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	4	1	0.33	0.0126	0.0126	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC44_LUNG	0.33	1	0.0252	TRUE	458	1351	185	561	0	FALSE	ACH-000667
ASPC1_PANCREAS	TIMM23B--LINC00843	77	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9136	0.261	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ASPC1_PANCREAS	1	1	1.1746	TRUE	508	994	45	981	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-TA--MT-TN	78	1	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9255	0.0119	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ASPC1_PANCREAS	1	1	0.9374	FALSE	369	2501	205	193	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-TA--MT-TC	55	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6526	0.0593	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ASPC1_PANCREAS	1	1	0.7119	FALSE	462	80	0	856	0	FALSE	ACH-000222
ASPC1_PANCREAS	TIMM23--RP11-464F9.1	42	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	207	4	0.18	0.92	0.4983	0.0237	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ASPC1_PANCREAS	0.18	0.92	0.522	TRUE	519	3926	326	965	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-ND6--MT-TE	32	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3797	0.0237	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ASPC1_PANCREAS	1	1	0.4034	FALSE	499	1288	110	792	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-ND4--MT-ND4L	15	50	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	4649	0	0.01	1	0.178	0.5933	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ASPC1_PANCREAS	0.01	1	0.7713	FALSE	344	827	44	306	0	FALSE	ACH-000222
ASPC1_PANCREAS	OR51S1--TP53I11	25	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2966	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	ASPC1_PANCREAS	1	1	0.2966	TRUE	402	216	10	229	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-ND4--MT-ND4L	5	75	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	11	0	0.88	1	0.0593	0.8899	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ASPC1_PANCREAS	0.88	1	0.9492	FALSE	344	826	44	306	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-ND6--MT-TE	22	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.85	1	0.261	0.0831	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ASPC1_PANCREAS	0.85	1	0.3441	FALSE	499	1288	110	792	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-ND6--MT-TE	23	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2729	0.0237	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ASPC1_PANCREAS	1	1	0.2966	FALSE	499	1288	110	792	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-TA--MT-TC	19	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2254	0.0356	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ASPC1_PANCREAS	1	1	0.261	FALSE	462	80	0	856	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-TA--MT-TN	10	38	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1187	0.4509	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ASPC1_PANCREAS	1	1	0.5696	FALSE	369	2501	205	193	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-TA--MT-TN	6	53	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0712	0.6289	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ASPC1_PANCREAS	1	1	0.7001	FALSE	369	2501	205	193	0	FALSE	ACH-000222
ASPC1_PANCREAS	POLR1A--REEP1	16	8	POLR1A	14506	chr2:86292397:-	REEP1	47395	chr2:86509365:-	ONLY_REF_SPLICE	YES	44	0	0.35	1	0.1898	0.0949	POLR1A->chr2:86247339-86333278:-,polymerase_(RNA)_I_subunit_A,REEP1->chr2:86441116-86565206:-,receptor_accessory_protein_1	ASPC1_PANCREAS	0.35	1	0.2847	TRUE	0	4	0	1	4	TRUE	ACH-000222
ASPC1_PANCREAS	MT-ND4--MT-ND4L	3	57	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	1	0.94	0.98	0.0356	0.6763	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ASPC1_PANCREAS	0.94	0.98	0.7119	FALSE	344	821	44	306	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-TA--MT-TN	8	17	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0949	0.2017	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ASPC1_PANCREAS	1	1	0.2966	FALSE	369	2501	205	193	0	FALSE	ACH-000222
ASPC1_PANCREAS	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1424	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	ASPC1_PANCREAS	1	1	0.1424	TRUE	46	1352	75	139	0	FALSE	ACH-000222
ASPC1_PANCREAS	NRIP1--AF127936.7	10	5	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.79	1	0.1187	0.0593	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ASPC1_PANCREAS	0.79	1	0.178	FALSE	292	1546	117	613	0	FALSE	ACH-000222
ASPC1_PANCREAS	RP11-96H19.1--RP11-446N19.1	9	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1068	0.0831	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ASPC1_PANCREAS	0.94	1	0.1899	FALSE	515	4851	409	746	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-TA--MT-TN	9	1	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1068	0.0119	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ASPC1_PANCREAS	1	1	0.1187	FALSE	369	2501	205	193	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-TA--MT-TN	9	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1068	0.0119	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ASPC1_PANCREAS	1	1	0.1187	FALSE	369	2501	205	193	0	FALSE	ACH-000222
ASPC1_PANCREAS	CCAT1--CASC8	3	22	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	25	0	0.5	1	0.0356	0.261	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	ASPC1_PANCREAS	0.5	1	0.2966	TRUE	0	26	0	18	24	TRUE	ACH-000222
ASPC1_PANCREAS	PXN--OGFOD2	7	6	PXN	10891	chr12:120659426:-	OGFOD2	24417	chr12:123460358:+	ONLY_REF_SPLICE	YES	341	32	0.04	0.29	0.0831	0.0712	PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,OGFOD2->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_2,chr12:123459127-123464590:+	ASPC1_PANCREAS	0.04	0.29	0.1543	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	MT-TA--MT-TN	8	1	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0949	0.0119	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ASPC1_PANCREAS	1	1	0.1068	FALSE	369	2501	205	193	0	FALSE	ACH-000222
ASPC1_PANCREAS	RP11-551L14.4--DENND5B	5	7	RP11-551L14.4	2325	chr12:31152122:-	DENND5B	10868	chr12:31652605:-	ONLY_REF_SPLICE	YES	14	6	0.46	0.67	0.0593	0.0831	RP11-551L14.4->chr12:31149973-31158938:-,DENND5B->DENN_domain_containing_5B,chr12:31535157-31744031:-	ASPC1_PANCREAS	0.46	0.67	0.1424	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	LGALS4--MT-ATP8	6	1	LGALS4	5424	chr19:39294386:-	MT-ATP8	10526	chrM:8392:+	INCL_NON_REF_SPLICE	YES	2229	0	0	1	0.0712	0.0119	LGALS4->chr19:39292311-39304004:-,lectin,_galactoside_binding_soluble_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ASPC1_PANCREAS	0	1	0.0831	FALSE	0	0	0	3	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-TA--MT-TN	6	1	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0712	0.0119	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ASPC1_PANCREAS	1	1	0.0831	FALSE	369	2501	205	193	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-ND4--MT-ND4L	3	12	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	12	0	0.56	1	0.0356	0.1424	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ASPC1_PANCREAS	0.56	1	0.178	FALSE	344	826	44	306	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-ND4--MT-ND4L	3	12	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	29	0	0.34	1	0.0356	0.1424	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ASPC1_PANCREAS	0.34	1	0.178	FALSE	344	827	44	306	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-ND4--MT-ND4L	3	12	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	483	0	0.03	1	0.0356	0.1424	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ASPC1_PANCREAS	0.03	1	0.178	FALSE	344	827	44	306	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-ND4--MT-ND4L	4	7	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	11	0	0.5	1	0.0475	0.0831	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ASPC1_PANCREAS	0.5	1	0.1306	FALSE	344	826	44	306	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-ND6--MT-TE	3	9	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.75	1	0.0356	0.1068	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ASPC1_PANCREAS	0.75	1	0.1424	FALSE	499	1288	110	792	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-ND6--MT-TE	3	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.71	1	0.0356	0.1068	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ASPC1_PANCREAS	0.71	1	0.1424	FALSE	499	1288	110	792	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-ND6--MT-TE	3	9	MT-ND6	1223	chrM:14451:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.0356	0.1068	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ASPC1_PANCREAS	0.8	1	0.1424	FALSE	499	1288	110	792	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-TA--MT-TC	4	5	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0.0593	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ASPC1_PANCREAS	1	1	0.1068	FALSE	462	80	0	856	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-TA--MT-TN	5	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0593	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ASPC1_PANCREAS	1	1	0.0593	FALSE	369	2501	205	193	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-ND4--MT-ND4L	3	7	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	16	0	0.38	1	0.0356	0.0831	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ASPC1_PANCREAS	0.38	1	0.1187	FALSE	344	826	44	306	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-ND4--MT-ND4L	3	7	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	11	0	0.48	1	0.0356	0.0831	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ASPC1_PANCREAS	0.48	1	0.1187	FALSE	344	826	44	306	0	FALSE	ACH-000222
ASPC1_PANCREAS	RP11-96H19.1--RP11-446N19.1	3	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0356	0.0831	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ASPC1_PANCREAS	0.91	1	0.1187	FALSE	407	2205	196	549	0	FALSE	ACH-000222
ASPC1_PANCREAS	RP11-96H19.1--RP11-446N19.1	3	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0356	0.0831	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ASPC1_PANCREAS	0.91	1	0.1187	FALSE	275	511	55	178	0	FALSE	ACH-000222
ASPC1_PANCREAS	NME1--RP11-481C4.1	4	1	NME1	3039	chr17:49233141:+	RP11-481C4.1	12412	chr17:49162658:+	ONLY_REF_SPLICE	YES	411	0	0.01	1	0.0475	0.0119	LOCAL_REARRANGEMENT:+:[68065],NME1->NME/NM23_nucleoside_diphosphate_kinase_1,chr17:49230897-49239789:+,RP11-481C4.1->chr17:49119885-49162832:+	ASPC1_PANCREAS	0.01	1	0.0594	FALSE	0	0	0	1	0	FALSE	ACH-000222
ASPC1_PANCREAS	LY6E--S100A6	4	0	LY6E	4687	chr8:144103227:+	S100A6	9963	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	ASPC1_PANCREAS	1	1	0.0475	TRUE	0	0	0	7	0	TRUE	ACH-000222
ASPC1_PANCREAS	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ASPC1_PANCREAS	1	1	0.0475	FALSE	462	80	0	856	0	FALSE	ACH-000222
ASPC1_PANCREAS	TAPBP--MT-ND4L	4	0	TAPBP	4456	chr6:33273137:-	MT-ND4L	12323	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	TAPBP->TAP_binding_protein_(tapasin),chr6:33267471-33282164:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ASPC1_PANCREAS	1	1	0.0475	FALSE	0	0	0	3	0	FALSE	ACH-000222
ASPC1_PANCREAS	NRIP1--AF127936.7	1	11	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	18	0	0.4	1	0.0119	0.1305	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ASPC1_PANCREAS	0.4	1	0.1424	FALSE	164	806	69	479	0	FALSE	ACH-000222
ASPC1_PANCREAS	FGFR2--COL14A1	3	1	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	52	1	0.07	0.8	0.0356	0.0119	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	ASPC1_PANCREAS	0.07	0.8	0.0475	TRUE	0	0	0	32	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-ND6--MT-TE	3	1	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0356	0.0119	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ASPC1_PANCREAS	0.67	1	0.0475	FALSE	499	1288	110	792	0	FALSE	ACH-000222
ASPC1_PANCREAS	EIF1--RPS28	3	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	ASPC1_PANCREAS	1	1	0.0356	TRUE	0	0	0	81	0	FALSE	ACH-000222
ASPC1_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ASPC1_PANCREAS	1	1	0.0356	FALSE	499	1288	110	792	0	FALSE	ACH-000222
ASPC1_PANCREAS	NRIP1--AF127936.7	1	8	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.33	1	0.0119	0.0949	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ASPC1_PANCREAS	0.33	1	0.1068	FALSE	125	705	46	456	0	FALSE	ACH-000222
ASPC1_PANCREAS	VTI1A--RP11-57H14.3	3	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	ASPC1_PANCREAS	1	1	0.0356	FALSE	272	151	14	158	0	FALSE	ACH-000222
ASPC1_PANCREAS	RP11-551L14.4--DENND5B	1	7	RP11-551L14.4	3689	chr12:31150346:-	DENND5B	10868	chr12:31652605:-	ONLY_REF_SPLICE	YES	5	6	0.62	0.57	0.0119	0.0831	RP11-551L14.4->chr12:31149973-31158938:-,DENND5B->DENN_domain_containing_5B,chr12:31535157-31744031:-	ASPC1_PANCREAS	0.57	0.62	0.095	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0119	0.0831	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ASPC1_PANCREAS	1	1	0.095	FALSE	467	2173	244	435	0	FALSE	ACH-000222
ASPC1_PANCREAS	PXN--OGFOD2	1	6	PXN	12776	chr12:120657010:-	OGFOD2	24417	chr12:123460358:+	ONLY_REF_SPLICE	YES	376	32	0.02	0.18	0.0119	0.0712	PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,OGFOD2->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_2,chr12:123459127-123464590:+	ASPC1_PANCREAS	0.02	0.18	0.0831	TRUE	0	0	0	1	0	FALSE	ACH-000222
ASPC1_PANCREAS	CPSF6--CHMP1A	2	1	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	107	176	0.03	0.02	0.0237	0.0119	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	ASPC1_PANCREAS	0.02	0.03	0.0356	TRUE	95	74	6	34	0	FALSE	ACH-000222
ASPC1_PANCREAS	PXN--OGFOD2	1	5	PXN	10891	chr12:120659426:-	OGFOD2	25260	chr12:123461201:+	ONLY_REF_SPLICE	YES	341	32	0.02	0.16	0.0119	0.0593	PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,OGFOD2->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_2,chr12:123459127-123464590:+	ASPC1_PANCREAS	0.02	0.16	0.0712	TRUE	0	0	0	1	0	FALSE	ACH-000222
ASPC1_PANCREAS	RP11-551L14.4--DENND5B	2	1	RP11-551L14.4	1207	chr12:31158732:-	DENND5B	10868	chr12:31652605:-	ONLY_REF_SPLICE	YES	7	6	0.3	0.33	0.0237	0.0119	RP11-551L14.4->chr12:31149973-31158938:-,DENND5B->DENN_domain_containing_5B,chr12:31535157-31744031:-	ASPC1_PANCREAS	0.3	0.33	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	AC019117.2--AHR	2	0	AC019117.2	5389	chr7:17474572:-	AHR	10569	chr7:17349560:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	LOCAL_INVERSION:-:+:[88325],AC019117.2->chr7:17474101-17500296:-,AHR->aryl_hydrocarbon_receptor,chr7:17338246-17385776:+	ASPC1_PANCREAS	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	ANXA11--TSPAN14	2	0	ANXA11	1230	chr10:81965099:-	TSPAN14	33514	chr10:82248973:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	ANXA11->annexin_A11,chr10:81910645-81965328:-,TSPAN14->chr10:82213922-82292879:+,tetraspanin_14	ASPC1_PANCREAS	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	CALM2--LRPPRC	2	0	CALM2	1161	chr2:47403580:-	LRPPRC	23258	chr2:44190845:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,LRPPRC->chr2:44113647-44223144:-,leucine_rich_pentatricopeptide_repeat_containing	ASPC1_PANCREAS	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	FAR1--RRAS2	2	0	FAR1	1137	chr11:13690353:+	RRAS2	30938	chr11:14317401:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	FAR1->chr11:13690217-13753893:+,fatty_acyl-CoA_reductase_1,RRAS2->Oncogene{Bushman},chr11:14299472-14386052:-,related_RAS_viral_(r-ras)_oncogene_homolog_2	ASPC1_PANCREAS	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ASPC1_PANCREAS	1	1	0.0237	FALSE	25	145	6	90	0	FALSE	ACH-000222
ASPC1_PANCREAS	NUP54--TBC1D17	2	0	NUP54	1208	chr4:77069461:-	TBC1D17	24414	chr19:50386908:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	NUP54->chr4:77035812-77069668:-,nucleoporin_54kDa,TBC1D17->TBC1_domain_family_member_17,chr19:50380682-50392005:+	ASPC1_PANCREAS	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	RP11-1029J19.5--AL132709.1	2	0	RP11-1029J19.5	1055	chr14:102197391:-	AL132709.1	7295	chr14:101543043:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	RP11-1029J19.5->chr14:102100791-102197445:-,AL132709.1->chr14:101540206-101544247:-	ASPC1_PANCREAS	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000222
ASPC1_PANCREAS	ANKRD12--VAPA	1	1	ANKRD12	11771	chr18:9221997:+	VAPA	36164	chr18:9931807:+	ONLY_REF_SPLICE	YES	17	184	0.11	0.01	0.0119	0.0119	GTEx&tcga_normals:1/3694=0.03%,ANKRD12->ankyrin_repeat_domain_12,chr18:9136226-9285983:+,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	ASPC1_PANCREAS	0.01	0.11	0.0238	FALSE	0	0	0	3	0	FALSE	ACH-000222
ASPC1_PANCREAS	BAIAP2L1--ARPC1A	1	1	BAIAP2L1	4549	chr7:97984354:-	ARPC1A	22092	chr7:98930948:+	ONLY_REF_SPLICE	YES	659	641	0	0	0.0119	0.0119	BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-,ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+	ASPC1_PANCREAS	0	0	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000222
ASPC1_PANCREAS	RP11-1L12.3--SLC5A12	1	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0119	0.0119	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	ASPC1_PANCREAS	0.2	1	0.0238	TRUE	3	101	0	60	0	FALSE	ACH-000222
ASPC1_PANCREAS	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	9	1	0.18	0.0119	0.0119	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ASPC1_PANCREAS	0.18	1	0.0238	TRUE	465	1949	224	605	0	FALSE	ACH-000222
ASPC1_PANCREAS	SUN1--ADAP1	1	1	SUN1	23266	chr7:905704:+	ADAP1	49955	chr7:944809:-	ONLY_REF_SPLICE	YES	397	379	0.01	0.01	0.0119	0.0119	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Aorta=1,Prostate=1,Uterus=1},LOCAL_INVERSION:+:-:[1468],SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+,ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-	ASPC1_PANCREAS	0.01	0.01	0.0238	FALSE	3	2	0	4	0	FALSE	ACH-000222
NCIH226_LUNG	TIMM23B--LINC00843	110	56	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4936	0.7604	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH226_LUNG	1	1	2.254	TRUE	508	994	45	981	0	FALSE	ACH-000367
NCIH226_LUNG	TIMM23--RP11-464F9.1	71	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	509	1	0.13	0.99	0.964	0.0815	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH226_LUNG	0.13	0.99	1.0455	TRUE	519	3926	326	965	0	FALSE	ACH-000367
NCIH226_LUNG	BCAR3--RP5-898J17.1	61	28	BCAR3	8673	chr1:94140170:-	RP5-898J17.1	32392	chr1:96769894:-	ONLY_REF_SPLICE	YES	112	0	0.44	1	0.8283	0.3802	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,RP5-898J17.1->chr1:96719625-96839681:-	NCIH226_LUNG	0.44	1	1.2085	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	RP11-123O10.4--GRIP1	38	13	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.516	0.1765	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH226_LUNG	1	1	0.6925	FALSE	416	2512	207	587	0	FALSE	ACH-000367
NCIH226_LUNG	MT-TA--MT-TC	29	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3938	0.0679	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH226_LUNG	1	1	0.4617	FALSE	462	80	0	856	0	FALSE	ACH-000367
NCIH226_LUNG	ZNF654--HMGB2	27	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3666	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH226_LUNG	1	1	0.3666	TRUE	0	0	0	518	0	FALSE	ACH-000367
NCIH226_LUNG	NRIP1--AF127936.7	24	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3259	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH226_LUNG	1	1	0.3259	FALSE	292	1546	117	613	0	FALSE	ACH-000367
NCIH226_LUNG	RP11-680G10.1--GSE1	17	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	64	1	0.25	0.2308	0.0543	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH226_LUNG	0.25	1	0.2851	TRUE	465	1949	224	605	0	FALSE	ACH-000367
NCIH226_LUNG	PKM--PPIA	16	7	PKM	16758	chr15:72494872:-	PPIA	23273	chr7:44836291:+	INCL_NON_REF_SPLICE	YES	6978	0	0	1	0.2172	0.095	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	NCIH226_LUNG	0	1	0.3122	TRUE	0	0	0	18	0	FALSE	ACH-000367
NCIH226_LUNG	GSK3B--AC026188.1	14	8	GSK3B	2071	chr3:119812194:-	AC026188.1	26755	chr3:3424314:-	INCL_NON_REF_SPLICE	YES	63	0	0.26	1	0.1901	0.1086	GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,AC026188.1->chr3:3292371-3668980:-	NCIH226_LUNG	0.26	1	0.2987	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	MED14-AS1--YWHAB	16	0	MED14-AS1	1118	chrX:40594769:+	YWHAB	5950	chr20:43514369:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2172	0	MED14-AS1->chrX:40594652-40597950:+,YWHAB->chr20:43514317-43537173:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_beta	NCIH226_LUNG	1	1	0.2172	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	RP11-680G10.1--GSE1	13	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	23	1	0.5	0.1765	0.1358	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH226_LUNG	0.5	1	0.3123	TRUE	458	1351	185	561	0	FALSE	ACH-000367
NCIH226_LUNG	PAFAH2--NR5A2	15	1	PAFAH2	1133	chr1:26324516:-	NR5A2	30254	chr1:200080330:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.2037	0.0136	PAFAH2->chr1:26286258-26324648:-,platelet_activating_factor_acetylhydrolase_2,NR5A2->chr1:199996730-200146552:+,nuclear_receptor_subfamily_5_group_A_member_2	NCIH226_LUNG	0.94	1	0.2173	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	NRIP1--AF127936.7	7	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	56	4	0.14	0.69	0.095	0.0272	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH226_LUNG	0.14	0.69	0.1222	FALSE	125	705	46	456	0	FALSE	ACH-000367
NCIH226_LUNG	GSK3B--AC026188.1	5	9	GSK3B	2071	chr3:119812194:-	AC026188.1	26735	chr3:3424334:-	ONLY_REF_SPLICE	YES	63	0	0.18	1	0.0679	0.1222	GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,AC026188.1->chr3:3292371-3668980:-	NCIH226_LUNG	0.18	1	0.1901	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	ROCK2--MYCNOS	5	8	ROCK2	7336	chr2:11375828:-	MYCNOS	39206	chr2:16081219:-	ONLY_REF_SPLICE	YES	23	0	0.36	1	0.0679	0.1086	ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,MYCNOS->MYCN_opposite_strand,chr2:16061159-16082371:-	NCIH226_LUNG	0.36	1	0.1765	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	RP11-120D5.1--MID1	6	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	54	0.62	0.13	0.0815	0.0272	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH226_LUNG	0.13	0.62	0.1087	FALSE	16	356	14	466	0	FALSE	ACH-000367
NCIH226_LUNG	EIF3I--ALDH1A3	6	1	EIF3I	2791	chr1:32689722:+	ALDH1A3	22701	chr15:101440780:+	ONLY_REF_SPLICE	YES	1709	7197	0	0	0.0815	0.0136	EIF3I->Oncogene{Bushman},chr1:32687529-32697205:+,eukaryotic_translation_initiation_factor_3_subunit_I,ALDH1A3->aldehyde_dehydrogenase_1_family_member_A3,chr15:101417919-101456831:+	NCIH226_LUNG	0	0	0.0951	FALSE	0	0	0	1	0	FALSE	ACH-000367
NCIH226_LUNG	RP11-123O10.4--GRIP1	5	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0679	0.0543	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH226_LUNG	1	1	0.1222	FALSE	93	270	15	244	0	FALSE	ACH-000367
NCIH226_LUNG	CELF1--KBTBD4	5	3	CELF1	3345	chr11:47574544:-	KBTBD4	34257	chr11:47597251:-	ONLY_REF_SPLICE	YES	219	37	0.04	0.18	0.0679	0.0407	LOCAL_INVERSION:-:-,chr11:[6628],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,KBTBD4->chr11:47593749-47600567:-,chr11:47599277-47599823:+,kelch_repeat_and_BTB_domain_containing_4	NCIH226_LUNG	0.04	0.18	0.1086	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	BCAR3--RP5-898J17.1	5	2	BCAR3	6854	chr1:94147154:-	RP5-898J17.1	32392	chr1:96769894:-	ONLY_REF_SPLICE	YES	43	0	0.14	1	0.0679	0.0272	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,RP5-898J17.1->chr1:96719625-96839681:-	NCIH226_LUNG	0.14	1	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	CALM3--MT-ND4L	4	6	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1668	0	0.01	1	0.0543	0.0815	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH226_LUNG	0.01	1	0.1358	FALSE	1	1	0	107	0	FALSE	ACH-000367
NCIH226_LUNG	RBBP5--DSTYK	3	9	RBBP5	3256	chr1:205083917:-	DSTYK	21252	chr1:205138960:-	ONLY_REF_SPLICE	YES	66	49	0.15	0.2	0.0407	0.1222	LOCAL_REARRANGEMENT:-:[20489],RBBP5->Oncogene{Bushman},chr1:205055270-205091143:-,retinoblastoma_binding_protein_5,DSTYK->chr1:205111632-205180727:-,dual_serine/threonine_and_tyrosine_protein_kinase	NCIH226_LUNG	0.15	0.2	0.1629	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	C15orf57--CBX3	3	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	33	106	0.25	0.09	0.0407	0.1086	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH226_LUNG	0.09	0.25	0.1493	TRUE	267	562	48	632	0	FALSE	ACH-000367
NCIH226_LUNG	PARP9--RP11-81N13.1	3	4	PARP9	1139	chr3:122283286:-	RP11-81N13.1	29845	chr3:67890446:+	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0407	0.0543	PARP9->chr3:122246771-122283424:-,poly(ADP-ribose)_polymerase_family_member_9,RP11-81N13.1->chr3:67705121-67998137:+	NCIH226_LUNG	0.64	1	0.095	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH226_LUNG	1	1	0.0543	TRUE	22	156	2	142	0	FALSE	ACH-000367
NCIH226_LUNG	NRIP1--AF127936.7	3	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	81	4	0.07	0.6	0.0407	0.0407	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH226_LUNG	0.07	0.6	0.0814	FALSE	164	806	69	479	0	FALSE	ACH-000367
NCIH226_LUNG	BCAR3--RP5-898J17.1	1	10	BCAR3	8673	chr1:94140170:-	RP5-898J17.1	34247	chr1:96721306:-	ONLY_REF_SPLICE	NO	112	3	0.09	0.79	0.0136	0.1358	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,RP5-898J17.1->chr1:96719625-96839681:-	NCIH226_LUNG	0.09	0.79	0.1494	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	RP11-18H7.1--TF	3	2	RP11-18H7.1	1884	chr3:119814625:+	TF	17659	chr3:133475675:+	ONLY_REF_SPLICE	YES	1	2	0.83	0.71	0.0407	0.0272	RP11-18H7.1->chr3:119813742-119855630:+,TF->chr3:133464800-133497850:+,transferrin	NCIH226_LUNG	0.71	0.83	0.0679	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	YWHAE--CRK	3	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	3676	190	0	0.03	0.0407	0.0272	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NCIH226_LUNG	0	0.03	0.0679	FALSE	6	50	7	115	0	FALSE	ACH-000367
NCIH226_LUNG	ANXA5--ALDH1A3	3	0	ANXA5	2572	chr4:122607489:-	ALDH1A3	17573	chr15:101420035:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	ANXA5->annexin_A5,chr4:122589110-122618268:-,ALDH1A3->aldehyde_dehydrogenase_1_family_member_A3,chr15:101417919-101456831:+	NCIH226_LUNG	1	1	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	RCC1--NFYB	3	0	RCC1	2175	chr1:28834672:+	NFYB	20792	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	NCIH226_LUNG	1	1	0.0407	TRUE	0	0	0	2	0	TRUE	ACH-000367
NCIH226_LUNG	PVT1--MYC	2	3	PVT1	10746	chr8:128951922:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	51	229	0.09	0.02	0.0272	0.0407	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	NCIH226_LUNG	0.02	0.09	0.0679	TRUE	0	1	0	4	0	FALSE	ACH-000367
NCIH226_LUNG	RBMS3--SACM1L	2	3	RBMS3	8902	chr3:29804480:+	SACM1L	48329	chr3:45776727:+	ONLY_REF_SPLICE	YES	12	81	0.29	0.06	0.0272	0.0407	RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+,SACM1L->SAC1_suppressor_of_actin_mutations_1-like_(yeast),chr3:45730548-45786916:+	NCIH226_LUNG	0.06	0.29	0.0679	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	CTC-786C10.1--GSE1	1	6	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	YES	1	64	0.88	0.1	0.0136	0.0815	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH226_LUNG	0.1	0.88	0.0951	TRUE	2	3	0	21	0	FALSE	ACH-000367
NCIH226_LUNG	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0272	0.0272	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH226_LUNG	0.8	1	0.0544	FALSE	515	4851	409	746	0	FALSE	ACH-000367
NCIH226_LUNG	CRIM1--FEZ2	2	1	CRIM1	1698	chr2:36583766:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	1006	308	0	0.01	0.0272	0.0136	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	NCIH226_LUNG	0	0.01	0.0408	FALSE	2	0	0	2	0	FALSE	ACH-000367
NCIH226_LUNG	IGF2BP2--TRA2B	2	1	IGF2BP2	3513	chr3:185538800:-	TRA2B	30253	chr3:185649640:-	ONLY_REF_SPLICE	YES	507	1104	0.01	0	0.0272	0.0136	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	NCIH226_LUNG	0	0.01	0.0408	FALSE	0	0	0	5	0	FALSE	ACH-000367
NCIH226_LUNG	PVT1--MYC	2	1	PVT1	8346	chr8:128903244:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	122	229	0.02	0.01	0.0272	0.0136	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	NCIH226_LUNG	0.01	0.02	0.0408	FALSE	0	5	0	7	2	FALSE	ACH-000367
NCIH226_LUNG	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	67	1	0.04	0.0272	0.0136	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH226_LUNG	0.04	1	0.0408	TRUE	64	13	3	59	0	FALSE	ACH-000367
NCIH226_LUNG	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH226_LUNG	1	1	0.0272	TRUE	347	1186	183	220	0	FALSE	ACH-000367
NCIH226_LUNG	F3--PSMA1	2	0	F3	1264	chr1:95007093:-	PSMA1	18376	chr11:14535245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1	NCIH226_LUNG	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	GPBP1L1--COX4I1	2	0	GPBP1L1	1131	chr1:46153655:-	COX4I1	25678	chr16:85834811:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-,COX4I1->chr16:85832239-85840650:+,cytochrome_c_oxidase_subunit_4I1	NCIH226_LUNG	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	MTERFD2--AHSA2	2	0	MTERFD2	11529	chr2:242028603:-	AHSA2	22701	chr2:61406116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	MTERFD2->chr2:242011584-242041747:-,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	NCIH226_LUNG	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	RCC1--MRPL3	2	0	RCC1	2175	chr1:28834672:+	MRPL3	27527	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	NCIH226_LUNG	1	1	0.0272	TRUE	0	0	0	6	0	TRUE	ACH-000367
NCIH226_LUNG	UBE2D2--PSMA1	2	0	UBE2D2	5520	chr5:138994202:+	PSMA1	20154	chr11:14535245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2,PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1	NCIH226_LUNG	1	1	0.0272	TRUE	0	1	0	1	0	TRUE	ACH-000367
NCIH226_LUNG	CRIM1--FEZ2	1	2	CRIM1	21418	chr2:36764689:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	981	308	0	0.01	0.0136	0.0272	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	NCIH226_LUNG	0	0.01	0.0408	FALSE	1	4	0	11	0	FALSE	ACH-000367
NCIH226_LUNG	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	19658	chr21:16210144:-	ONLY_REF_SPLICE	YES	81	56	0.04	0.05	0.0136	0.0272	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH226_LUNG	0.04	0.05	0.0408	FALSE	0	2	1	3	0	FALSE	ACH-000367
NCIH226_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0136	0.0272	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH226_LUNG	0.75	1	0.0408	FALSE	407	2205	196	549	0	FALSE	ACH-000367
NCIH226_LUNG	AFF1--PSMG3	1	1	AFF1	3385	chr4:87869723:+	PSMG3	36811	chr7:1608996:-	ONLY_REF_SPLICE	YES	120	86	0.02	0.02	0.0136	0.0136	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	NCIH226_LUNG	0.02	0.02	0.0272	TRUE	0	0	0	1	0	FALSE	ACH-000367
NCIH226_LUNG	AGRN--RP11-332H18.4	1	1	AGRN	4732	chr1:970704:+	RP11-332H18.4	28419	chr17:59471108:-	ONLY_REF_SPLICE	YES	426	0	0	1	0.0136	0.0136	AGRN->agrin,chr1:955503-991496:+,RP11-332H18.4->chr17:59470817-59488916:-	NCIH226_LUNG	0	1	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000367
NCIH226_LUNG	ARHGEF12--POU2F3	1	1	ARHGEF12	37436	chr11:120338017:+	POU2F3	60912	chr11:120168974:+	ONLY_REF_SPLICE	NO	107	0	0.02	1	0.0136	0.0136	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[17134],ARHGEF12->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_12,chr11:120207787-120360645:+,POU2F3->POU_class_2_homeobox_3,chr11:120107349-120190653:+	NCIH226_LUNG	0.02	1	0.0272	TRUE	0	0	0	1	0	FALSE	ACH-000367
NCIH226_LUNG	ERC2--WNT5A	1	1	ERC2	3976	chr3:56468379:-	WNT5A	39144	chr3:55514946:-	ONLY_REF_SPLICE	NO	4	26	0.33	0.07	0.0136	0.0136	NEIGHBORS[18363],ERC2->ELKS/RAB6-interacting/CAST_family_member_2,Oncogene{Bushman},chr3:55542336-56502391:-,WNT5A->Oncogene{Bushman},Wnt_family_member_5A,chr3:55499743-55523973:-	NCIH226_LUNG	0.07	0.33	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000367
NCIH226_LUNG	MDM2--NUP107	1	1	MDM2	2117	chr12:69203072:+	NUP107	35037	chr12:69109407:+	ONLY_REF_SPLICE	YES	502	215	0	0.01	0.0136	0.0136	LOCAL_REARRANGEMENT:+:[65171],MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa	NCIH226_LUNG	0	0.01	0.0272	FALSE	0	1	0	1	0	FALSE	ACH-000367
NCIH226_LUNG	PDHX--CD44	1	1	PDHX	1987	chr11:34938362:+	CD44	20666	chr11:35198122:+	ONLY_REF_SPLICE	YES	164	2208	0.01	0	0.0136	0.0136	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	NCIH226_LUNG	0	0.01	0.0272	FALSE	0	0	0	2	0	FALSE	ACH-000367
NCIH226_LUNG	PDHX--CD44	1	1	PDHX	1987	chr11:34938362:+	CD44	37425	chr11:35236399:+	ONLY_REF_SPLICE	YES	164	1716	0.01	0	0.0136	0.0136	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	NCIH226_LUNG	0	0.01	0.0272	FALSE	0	1	0	9	0	FALSE	ACH-000367
NCIH226_LUNG	SHFM1--ACN9	1	1	SHFM1	7020	chr7:96324110:-	ACN9	29383	chr7:96810324:+	ONLY_REF_SPLICE	NO	692	199	0	0.01	0.0136	0.0136	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,ACN9->chr7:96745902-96811075:+	NCIH226_LUNG	0	0.01	0.0272	FALSE	0	2	0	2	0	FALSE	ACH-000367
NCIH226_LUNG	TAF1D--PHF14	1	1	TAF1D	6933	chr11:93470230:-	PHF14	41565	chr7:11150977:+	ONLY_REF_SPLICE	YES	320	99	0.01	0.02	0.0136	0.0136	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Muscle_-_Skeletal=1},TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH226_LUNG	0.01	0.02	0.0272	FALSE	1	3	0	3	0	FALSE	ACH-000367
HEC6_ENDOMETRIUM	TIMM23B--LINC00843	115	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3343	0.3249	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HEC6_ENDOMETRIUM	1	1	1.6592	TRUE	508	994	45	981	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	SOCS4--WDHD1	80	49	SOCS4	2658	chr14:55498709:+	WDHD1	15706	chr14:55477178:-	ONLY_REF_SPLICE	YES	24	47	0.84	0.73	0.9282	0.5685	LOCAL_INVERSION:+:-:[125],SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4,WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-	HEC6_ENDOMETRIUM	0.73	0.84	1.4967	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	TIMM23--RP11-464F9.1	72	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	254	3	0.23	0.96	0.8354	0.0464	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HEC6_ENDOMETRIUM	0.23	0.96	0.8818	TRUE	519	3926	326	965	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	C2orf69--ROCK2	59	47	C2orf69	1516	chr2:200776494:+	ROCK2	13051	chr2:11427862:-	ONLY_REF_SPLICE	YES	26	24	0.8	0.82	0.6846	0.5453	C2orf69->chr2:200775979-200820658:+,chromosome_2_open_reading_frame_69,ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-	HEC6_ENDOMETRIUM	0.8	0.82	1.2299	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	DHX40--VMP1	52	27	DHX40	11821	chr17:57665414:+	VMP1	35655	chr17:57895073:+	ONLY_REF_SPLICE	YES	80	172	0.5	0.31	0.6033	0.3133	NEIGHBORS[98847],DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HEC6_ENDOMETRIUM	0.31	0.5	0.9166	FALSE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	RP11-123O10.4--GRIP1	47	10	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5453	0.116	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HEC6_ENDOMETRIUM	1	1	0.6613	FALSE	416	2512	207	587	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	AL589743.1--RP11-536C10.17	36	1	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	12	0	0.76	1	0.4177	0.0116	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	HEC6_ENDOMETRIUM	0.76	1	0.4293	TRUE	0	33	0	45	33	FALSE	ACH-000984
HEC6_ENDOMETRIUM	AP000525.9--LA16c-60G3.6	36	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4177	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HEC6_ENDOMETRIUM	1	1	0.4177	TRUE	0	42	0	133	42	FALSE	ACH-000984
HEC6_ENDOMETRIUM	ZHX1--ATAD2	22	18	ZHX1	2420	chr8:124286362:-	ATAD2	27973	chr8:124369976:-	ONLY_REF_SPLICE	YES	34	47	0.54	0.46	0.2553	0.2089	LOCAL_REARRANGEMENT:-:[44309],ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-	HEC6_ENDOMETRIUM	0.46	0.54	0.4642	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	ZNF654--HMGB2	26	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3017	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HEC6_ENDOMETRIUM	1	1	0.3017	TRUE	0	0	0	518	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	OR51S1--TP53I11	22	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2553	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HEC6_ENDOMETRIUM	1	1	0.2553	TRUE	402	216	10	229	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	VPS54--PELI1	19	8	VPS54	2291	chr2:64210998:-	PELI1	31702	chr2:64335513:-	ONLY_REF_SPLICE	YES	18	27	0.6	0.5	0.2205	0.0928	LOCAL_REARRANGEMENT:-:[73580],VPS54->VPS54,_GARP_complex_subunit,chr2:64119280-64246206:-,PELI1->chr2:64319786-64371588:-,pellino_E3_ubiquitin_protein_ligase_1	HEC6_ENDOMETRIUM	0.5	0.6	0.3133	TRUE	0	1	0	1	1	TRUE	ACH-000984
HEC6_ENDOMETRIUM	RP11-680G10.1--GSE1	15	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	19	1	0.47	0.174	0.0232	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEC6_ENDOMETRIUM	0.47	1	0.1972	TRUE	465	1949	224	605	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	ZHX1--ATAD2	12	11	ZHX1	2325	chr8:124286457:-	ATAD2	27973	chr8:124369976:-	ONLY_REF_SPLICE	YES	19	47	0.55	0.33	0.1392	0.1276	LOCAL_REARRANGEMENT:-:[44309],ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-	HEC6_ENDOMETRIUM	0.33	0.55	0.2668	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	SOCS4--WDHD1	10	18	SOCS4	1242	chr14:55494189:+	WDHD1	15706	chr14:55477178:-	ONLY_REF_SPLICE	YES	30	47	0.48	0.37	0.116	0.2089	LOCAL_INVERSION:+:-:[125],SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4,WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-	HEC6_ENDOMETRIUM	0.37	0.48	0.3249	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	RAB3IP--PTPRB	12	6	RAB3IP	4471	chr12:70150443:+	PTPRB	28780	chr12:71016426:-	ONLY_REF_SPLICE	YES	59	0	0.23	1	0.1392	0.0696	RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+,PTPRB->chr12:70910630-71031220:-,protein_tyrosine_phosphatase,_receptor_type_B	HEC6_ENDOMETRIUM	0.23	1	0.2088	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	MKL1--ST13	11	8	MKL1	3549	chr22:40948110:-	ST13	25915	chr22:41246884:-	ONLY_REF_SPLICE	YES	84	1117	0.18	0.02	0.1276	0.0928	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	HEC6_ENDOMETRIUM	0.02	0.18	0.2204	TRUE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	C15orf57--CBX3	9	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	69	50	0.22	0.29	0.1044	0.1276	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEC6_ENDOMETRIUM	0.22	0.29	0.232	TRUE	267	562	48	632	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	MT-ND6--MT-TE	10	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.116	0.0464	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC6_ENDOMETRIUM	1	1	0.1624	FALSE	499	1288	110	792	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	FAM111B--GLYATL1P3	8	9	FAM111B	3151	chr11:58877179:+	GLYATL1P3	12550	chr11:58861002:+	ONLY_REF_SPLICE	YES	50	21	0.25	0.45	0.0928	0.1044	LOCAL_REARRANGEMENT:+:[12399],FAM111B->chr11:58874658-58894883:+,family_with_sequence_similarity_111_member_B,GLYATL1P3->chr11:58853780-58862259:+,glycine-N-acyltransferase_like_1_pseudogene_3	HEC6_ENDOMETRIUM	0.25	0.45	0.1972	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	ROCK2--C2orf69	8	9	ROCK2	2753	chr2:11484122:-	C2orf69	39570	chr2:200789785:+	ONLY_REF_SPLICE	YES	19	26	0.47	0.4	0.0928	0.1044	ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,C2orf69->chr2:200775979-200820658:+,chromosome_2_open_reading_frame_69	HEC6_ENDOMETRIUM	0.4	0.47	0.1972	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	C15orf57--CBX3	8	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	67	52	0.17	0.21	0.0928	0.0696	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEC6_ENDOMETRIUM	0.17	0.21	0.1624	TRUE	267	562	48	632	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	HSP90AB1--MT-RNR2	9	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2806	0	0	1	0.1044	0.0232	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEC6_ENDOMETRIUM	0	1	0.1276	FALSE	13	9	0	364	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	VPS54--PELI1	9	1	VPS54	1135	chr2:64246072:-	PELI1	31702	chr2:64335513:-	ONLY_REF_SPLICE	YES	3	27	0.77	0.27	0.1044	0.0116	LOCAL_REARRANGEMENT:-:[73580],VPS54->VPS54,_GARP_complex_subunit,chr2:64119280-64246206:-,PELI1->chr2:64319786-64371588:-,pellino_E3_ubiquitin_protein_ligase_1	HEC6_ENDOMETRIUM	0.27	0.77	0.116	TRUE	0	2	0	1	2	TRUE	ACH-000984
HEC6_ENDOMETRIUM	MT-ND6--MT-TE	7	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0812	0.0464	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC6_ENDOMETRIUM	1	1	0.1276	FALSE	499	1288	110	792	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	RP11-680G10.1--GSE1	7	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	11	1	0.5	0.0812	0.0464	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEC6_ENDOMETRIUM	0.5	1	0.1276	TRUE	458	1351	185	561	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	MT-ND6--MT-TE	4	14	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0.1624	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC6_ENDOMETRIUM	1	1	0.2088	FALSE	499	1288	110	792	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	RP11-123O10.4--GRIP1	5	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.058	0.0812	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HEC6_ENDOMETRIUM	1	1	0.1392	FALSE	93	270	15	244	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	CMTM8--CMTM7	6	2	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	79	114	0.09	0.07	0.0696	0.0232	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	HEC6_ENDOMETRIUM	0.07	0.09	0.0928	FALSE	118	557	29	88	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	WDHD1--SOCS4	4	9	WDHD1	8205	chr14:55467698:-	SOCS4	30487	chr14:55494283:+	INCL_NON_REF_SPLICE	YES	50	27	0.21	0.33	0.0464	0.1044	LOCAL_INVERSION:-:+:[125],WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-,SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4	HEC6_ENDOMETRIUM	0.21	0.33	0.1508	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	MT-ND6--MT-TE	4	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0.0928	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC6_ENDOMETRIUM	1	1	0.1392	FALSE	499	1288	110	792	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	MT-ND6--MT-TE	3	12	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0.1392	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC6_ENDOMETRIUM	1	1	0.174	FALSE	499	1288	110	792	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	TRAF7--KCTD5	6	0	TRAF7	1161	chr16:2205859:+	KCTD5	25488	chr16:2757299:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0696	0	TRAF7->Oncogene{Bushman},TNF_receptor_associated_factor_7,chr16:2205699-2228130:+,KCTD5->chr16:2732476-2759031:+,potassium_channel_tetramerization_domain_containing_5	HEC6_ENDOMETRIUM	1	1	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	FAM111B--GLYATL1P3	5	2	FAM111B	2157	chr11:58876185:+	GLYATL1P3	12550	chr11:58861002:+	ONLY_REF_SPLICE	YES	24	21	0.23	0.25	0.058	0.0232	LOCAL_REARRANGEMENT:+:[12399],FAM111B->chr11:58874658-58894883:+,family_with_sequence_similarity_111_member_B,GLYATL1P3->chr11:58853780-58862259:+,glycine-N-acyltransferase_like_1_pseudogene_3	HEC6_ENDOMETRIUM	0.23	0.25	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	HSP90AB1--MT-RNR2	5	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2811	0	0	1	0.058	0.0232	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEC6_ENDOMETRIUM	0	1	0.0812	FALSE	13	9	0	364	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	VPS54--PELI1	3	10	VPS54	3533	chr2:64208780:-	PELI1	31702	chr2:64335513:-	ONLY_REF_SPLICE	YES	25	27	0.34	0.33	0.0348	0.116	LOCAL_REARRANGEMENT:-:[73580],VPS54->VPS54,_GARP_complex_subunit,chr2:64119280-64246206:-,PELI1->chr2:64319786-64371588:-,pellino_E3_ubiquitin_protein_ligase_1	HEC6_ENDOMETRIUM	0.33	0.34	0.1508	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	LRP5--CCND1	5	0	LRP5	2594	chr11:68115711:+	CCND1	37436	chr11:69462762:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.058	0	LRP5->LDL_receptor_related_protein_5,Oncogene{Bushman},chr11:68080077-68216743:+,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	HEC6_ENDOMETRIUM	1	1	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	MT-ND6--MT-TE	3	8	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0.0928	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC6_ENDOMETRIUM	1	1	0.1276	FALSE	499	1288	110	792	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	EDF1--NPDC1	4	1	EDF1	3072	chr9:139757358:-	NPDC1	10409	chr9:139935639:-	ONLY_REF_SPLICE	YES	452	80	0.01	0.06	0.0464	0.0116	{Klijn_CCL:Lung=1,Cervix=1,Pancreas=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,NPDC1->chr9:139933922-139940655:-,neural_proliferation,_differentiation_and_control,_1	HEC6_ENDOMETRIUM	0.01	0.06	0.058	FALSE	0	0	0	5	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	NRIP1--AF127936.7	4	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0464	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC6_ENDOMETRIUM	1	1	0.0464	FALSE	125	705	46	456	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	PFKFB3--RBM17	4	0	PFKFB3	1096	chr10:6186976:+	RBM17	27573	chr10:6139011:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0464	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[27461],PFKFB3->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_3,chr10:6186881-6277495:+,RBM17->RNA_binding_motif_protein_17,chr10:6130950-6159420:+	HEC6_ENDOMETRIUM	1	1	0.0464	TRUE	0	0	0	2	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	C2orf69--ROCK2	1	10	C2orf69	1516	chr2:200776494:+	ROCK2	15234	chr2:11389924:-	ONLY_REF_SPLICE	YES	26	53	0.3	0.17	0.0116	0.116	C2orf69->chr2:200775979-200820658:+,chromosome_2_open_reading_frame_69,ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-	HEC6_ENDOMETRIUM	0.17	0.3	0.1276	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	TIMM23--RP11-464F9.1	3	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	26959	chr10:75454562:-	ONLY_REF_SPLICE	YES	254	8	0.02	0.38	0.0348	0.0232	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HEC6_ENDOMETRIUM	0.02	0.38	0.058	TRUE	1	3	0	8	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	BOP1--EEF1D	3	1	BOP1	4671	chr8:145500212:-	EEF1D	29535	chr8:144663498:-	ONLY_REF_SPLICE	YES	215	1089	0.02	0	0.0348	0.0116	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HEC6_ENDOMETRIUM	0	0.02	0.0464	FALSE	0	0	0	4	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	PIGQ--CAPN15	3	1	PIGQ	3829	chr16:620096:+	CAPN15	30802	chr16:601302:+	ONLY_REF_SPLICE	YES	56	67	0.07	0.06	0.0348	0.0116	LOCAL_REARRANGEMENT:+:[12359],PIGQ->chr16:616995-634136:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_Q,CAPN15->calpain_15,chr16:577717-604636:+	HEC6_ENDOMETRIUM	0.06	0.07	0.0464	TRUE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	LRP5--CCND1	3	0	LRP5	2594	chr11:68115711:+	CCND1	38683	chr11:69465886:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	LRP5->LDL_receptor_related_protein_5,Oncogene{Bushman},chr11:68080077-68216743:+,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	HEC6_ENDOMETRIUM	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	NRIP1--AF127936.7	3	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC6_ENDOMETRIUM	1	1	0.0348	FALSE	164	806	69	479	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	SOCS4--WDHD1	1	8	SOCS4	2658	chr14:55498709:+	WDHD1	16858	chr14:55475437:-	ONLY_REF_SPLICE	YES	24	50	0.27	0.15	0.0116	0.0928	LOCAL_INVERSION:+:-:[125],SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4,WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-	HEC6_ENDOMETRIUM	0.15	0.27	0.1044	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	PINX1--RP1L1	2	2	PINX1	6234	chr8:10683662:-	RP1L1	17312	chr8:10480730:-	ONLY_REF_SPLICE	YES	63	0	0.06	1	0.0232	0.0232	NEIGHBORS[52776],PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	HEC6_ENDOMETRIUM	0.06	1	0.0464	FALSE	1	8	0	15	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	C19orf25--DAZAP1	2	1	C19orf25	1783	chr19:1478773:-	DAZAP1	14319	chr19:1416456:+	ONLY_REF_SPLICE	YES	32	308	0.09	0.01	0.0232	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	HEC6_ENDOMETRIUM	0.01	0.09	0.0348	FALSE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	EDF1--ABCA2	2	1	EDF1	2690	chr9:139757740:-	ABCA2	8701	chr9:139918688:-	ONLY_REF_SPLICE	YES	731	30	0	0.09	0.0232	0.0116	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,ABCA2->ATP_binding_cassette_subfamily_A_member_2,chr9:139901686-139923367:-	HEC6_ENDOMETRIUM	0	0.09	0.0348	FALSE	0	0	0	2	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	MLLT1--SH3GL1	2	1	MLLT1	5710	chr19:6226988:-	SH3GL1	20389	chr19:4366991:-	ONLY_REF_SPLICE	YES	89	65	0.03	0.04	0.0232	0.0116	{Klijn_CCL:Lung=1},MLLT1->Oncogene{Bushman},chr19:6212966-6279959:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_1,SH3GL1->Oncogene{Bushman},SH3_domain_containing_GRB2_like_1,chr19:4360367-4400544:-	HEC6_ENDOMETRIUM	0.03	0.04	0.0348	TRUE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	PIGQ--CAPN15	2	1	PIGQ	4493	chr16:620760:+	CAPN15	30802	chr16:601302:+	ONLY_REF_SPLICE	YES	78	67	0.04	0.04	0.0232	0.0116	LOCAL_REARRANGEMENT:+:[12359],PIGQ->chr16:616995-634136:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_Q,CAPN15->calpain_15,chr16:577717-604636:+	HEC6_ENDOMETRIUM	0.04	0.04	0.0348	TRUE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	SLCO4A1--KCNQ2	2	1	SLCO4A1	1109	chr20:61273905:+	KCNQ2	19531	chr20:62078190:-	ONLY_REF_SPLICE	YES	3	155	0.5	0.02	0.0232	0.0116	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,KCNQ2->chr20:62037542-62103993:-,potassium_voltage-gated_channel_subfamily_Q_member_2	HEC6_ENDOMETRIUM	0.02	0.5	0.0348	TRUE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	DANCR--CYHR1	2	0	DANCR	1530	chr4:53579126:+	CYHR1	16157	chr8:145678843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	HEC6_ENDOMETRIUM	1	1	0.0232	TRUE	0	0	0	2	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	MKL1--ST13	2	0	MKL1	2287	chr22:40990678:-	ST13	25915	chr22:41246884:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	HEC6_ENDOMETRIUM	1	1	0.0232	TRUE	0	1	0	1	1	TRUE	ACH-000984
HEC6_ENDOMETRIUM	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC6_ENDOMETRIUM	1	1	0.0232	FALSE	292	1546	117	613	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	PIGQ--CAPN15	2	0	PIGQ	3528	chr16:619795:+	CAPN15	30802	chr16:601302:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	LOCAL_REARRANGEMENT:+:[12359],PIGQ->chr16:616995-634136:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_Q,CAPN15->calpain_15,chr16:577717-604636:+	HEC6_ENDOMETRIUM	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	RAB20--IRS2	2	0	RAB20	1386	chr13:111213695:-	IRS2	12042	chr13:110408655:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RAB20->RAB20,_member_RAS_oncogene_family,chr13:111175417-111214080:-,IRS2->ArcherDX_panel,FoundationOne_panel,chr13:110406184-110438915:-,insulin_receptor_substrate_2	HEC6_ENDOMETRIUM	1	1	0.0232	TRUE	1	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	SLCO4A1--PSMA7	2	0	SLCO4A1	1109	chr20:61273905:+	PSMA7	20024	chr20:60716000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	HEC6_ENDOMETRIUM	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	SLCO4A1--RNF166	2	0	SLCO4A1	1109	chr20:61273905:+	RNF166	23072	chr16:88766140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,RNF166->chr16:88762903-88772829:-,ring_finger_protein_166	HEC6_ENDOMETRIUM	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	SNX8--MAD1L1	2	0	SNX8	3400	chr7:2353963:-	MAD1L1	55703	chr7:1976533:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	NEIGHBORS[18527],SNX8->chr7:2291405-2393953:-,sorting_nexin_8,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	HEC6_ENDOMETRIUM	1	1	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	TP73-AS1--LRRC47	2	0	TP73-AS1	2730	chr1:3662171:-	LRRC47	14719	chr1:3703874:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	LOCAL_REARRANGEMENT:-:[32884],TP73-AS1->TP73_antisense_RNA_1,chr1:3652548-3663900:-,LRRC47->chr1:3696784-3713068:-,leucine_rich_repeat_containing_47	HEC6_ENDOMETRIUM	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	TRAF7--KCTD5	2	0	TRAF7	1161	chr16:2205859:+	KCTD5	19671	chr16:2745936:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TRAF7->Oncogene{Bushman},TNF_receptor_associated_factor_7,chr16:2205699-2228130:+,KCTD5->chr16:2732476-2759031:+,potassium_channel_tetramerization_domain_containing_5	HEC6_ENDOMETRIUM	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000984
HEC6_ENDOMETRIUM	PRKCZ--SKI	1	3	PRKCZ	4727	chr1:1991030:+	SKI	40556	chr1:2234417:+	ONLY_REF_SPLICE	NO	49	69	0.08	0.05	0.0116	0.0348	GTEx&tcga_normals:6/3694=0.16%,NEIGHBORS[43300],PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	HEC6_ENDOMETRIUM	0.05	0.08	0.0464	FALSE	2	3	0	2	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	ZHX1--ATAD2	1	3	ZHX1	2325	chr8:124286457:-	ATAD2	29148	chr8:124368717:-	ONLY_REF_SPLICE	YES	19	125	0.17	0.03	0.0116	0.0348	LOCAL_REARRANGEMENT:-:[44309],ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-	HEC6_ENDOMETRIUM	0.03	0.17	0.0464	TRUE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	CMTM8--CMTM7	1	2	CMTM8	2615	chr3:32399038:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	127	114	0.02	0.03	0.0116	0.0232	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	HEC6_ENDOMETRIUM	0.02	0.03	0.0348	FALSE	4	30	0	3	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	AGRN--CPSF3L	1	1	AGRN	2513	chr1:957842:+	CPSF3L	27414	chr1:1256473:-	ONLY_REF_SPLICE	NO	355	10	0.01	0.17	0.0116	0.0116	AGRN->agrin,chr1:955503-991496:+,CPSF3L->chr1:1246965-1260071:-,cleavage_and_polyadenylation_specific_factor_3-like	HEC6_ENDOMETRIUM	0.01	0.17	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	BOP1--EEF1D	1	1	BOP1	4671	chr8:145500212:-	EEF1D	21825	chr8:144672251:-	ONLY_REF_SPLICE	YES	215	95	0.01	0.02	0.0116	0.0116	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HEC6_ENDOMETRIUM	0.01	0.02	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	C19orf25--DAZAP1	1	1	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	32	287	0.06	0.01	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	HEC6_ENDOMETRIUM	0.01	0.06	0.0232	FALSE	6	7	1	24	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	C19orf26--TMEM259	1	1	C19orf26	6143	chr19:1231100:-	TMEM259	14450	chr19:1014472:-	ONLY_REF_SPLICE	YES	12	109	0.14	0.02	0.0116	0.0116	C19orf26->chr19:1228286-1238026:-,TMEM259->chr19:1009647-1021117:-,transmembrane_protein_259	HEC6_ENDOMETRIUM	0.02	0.14	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	CLPTM1L--KCTD5	1	1	CLPTM1L	4085	chr5:1338975:-	KCTD5	30753	chr16:2757299:+	ONLY_REF_SPLICE	YES	532	217	0	0.01	0.0116	0.0116	CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-,KCTD5->chr16:2732476-2759031:+,potassium_channel_tetramerization_domain_containing_5	HEC6_ENDOMETRIUM	0	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	EDF1--ABCA2	1	1	EDF1	3072	chr9:139757358:-	ABCA2	8701	chr9:139918688:-	ONLY_REF_SPLICE	YES	452	30	0	0.06	0.0116	0.0116	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,ABCA2->ATP_binding_cassette_subfamily_A_member_2,chr9:139901686-139923367:-	HEC6_ENDOMETRIUM	0	0.06	0.0232	FALSE	0	0	0	2	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	EDF1--NPDC1	1	1	EDF1	2690	chr9:139757740:-	NPDC1	10409	chr9:139935639:-	ONLY_REF_SPLICE	NO	731	80	0	0.02	0.0116	0.0116	{Klijn_CCL:Lung=1,Cervix=1,Pancreas=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,NPDC1->chr9:139933922-139940655:-,neural_proliferation,_differentiation_and_control,_1	HEC6_ENDOMETRIUM	0	0.02	0.0232	FALSE	0	0	0	5	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	EDF1--NPDC1	1	1	EDF1	2690	chr9:139757740:-	NPDC1	11160	chr9:139934888:-	ONLY_REF_SPLICE	YES	731	110	0	0.02	0.0116	0.0116	{Klijn_CCL:Lung=1,Cervix=1,Pancreas=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,NPDC1->chr9:139933922-139940655:-,neural_proliferation,_differentiation_and_control,_1	HEC6_ENDOMETRIUM	0	0.02	0.0232	FALSE	0	0	0	5	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	GALK2--COPS2	1	1	GALK2	16416	chr15:49531564:+	COPS2	30945	chr15:49437275:-	ONLY_REF_SPLICE	YES	40	3	0.05	0.4	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},NEIGHBORS_OVERLAP:+:-:[5],GALK2->chr15:49447853-49660066:+,galactokinase_2,COPS2->COP9_signalosome_subunit_2,Oncogene{Bushman},chr15:49398268-49447858:-	HEC6_ENDOMETRIUM	0.05	0.4	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	LRPAP1--RGS12	1	1	LRPAP1	2817	chr4:3526634:-	RGS12	51082	chr4:3441182:+	ONLY_REF_SPLICE	YES	602	7	0	0.22	0.0116	0.0116	LOCAL_INVERSION:-:+:[66463],LRPAP1->LDL_receptor_related_protein_associated_protein_1,chr4:3508103-3534286:-,RGS12->chr4:3294755-3441640:+,regulator_of_G-protein_signaling_12	HEC6_ENDOMETRIUM	0	0.22	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	RAB3IP--PTPRB	1	1	RAB3IP	3467	chr12:70149439:+	PTPRB	28780	chr12:71016426:-	ONLY_REF_SPLICE	YES	56	0	0.03	1	0.0116	0.0116	RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+,PTPRB->chr12:70910630-71031220:-,protein_tyrosine_phosphatase,_receptor_type_B	HEC6_ENDOMETRIUM	0.03	1	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	RNF126--TMEM259	1	1	RNF126	8126	chr19:648372:-	TMEM259	14465	chr19:1014472:-	ONLY_REF_SPLICE	YES	255	109	0.01	0.02	0.0116	0.0116	RNF126->chr19:647526-663277:-,ring_finger_protein_126,TMEM259->chr19:1009647-1021117:-,transmembrane_protein_259	HEC6_ENDOMETRIUM	0.01	0.02	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	34	1	0.06	0.0116	0.0116	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEC6_ENDOMETRIUM	0.06	1	0.0232	TRUE	64	13	3	59	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	SEC63--PPM1D	1	1	SEC63	19020	chr6:108214686:-	PPM1D	35645	chr17:58700882:+	ONLY_REF_SPLICE	YES	202	44	0.01	0.04	0.0116	0.0116	SEC63->SEC63_homolog,_protein_translocation_regulator,chr6:108188960-108279393:-,PPM1D->Oncogene{Bushman},chr17:58677544-58741849:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1D	HEC6_ENDOMETRIUM	0.01	0.04	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	SOCS5--TTC7A	1	1	SOCS5	1498	chr2:46926588:+	TTC7A	13783	chr2:47177502:+	ONLY_REF_SPLICE	YES	24	36	0.08	0.05	0.0116	0.0116	GTEx_FI:{Nerve=[count:2=pct:1.2],Brain=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},SOCS5->chr2:46926091-46990268:+,suppressor_of_cytokine_signaling_5,TTC7A->chr2:47143296-47303276:+,tetratricopeptide_repeat_domain_7A	HEC6_ENDOMETRIUM	0.05	0.08	0.0232	TRUE	5	3	1	3	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	TRMT61A--MTA1	1	1	TRMT61A	3393	chr14:103999185:+	MTA1	26436	chr14:105935804:+	ONLY_REF_SPLICE	YES	107	104	0.02	0.02	0.0116	0.0116	TRMT61A->chr14:103995521-104003410:+,tRNA_methyltransferase_61A,MTA1->Oncogene{Bushman},chr14:105886159-105937066:+,metastasis_associated_1	HEC6_ENDOMETRIUM	0.02	0.02	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	TTC40--CCND1	1	1	TTC40	2828	chr10:134754500:-	CCND1	62557	chr11:69465886:+	ONLY_REF_SPLICE	YES	13	674	0.13	0	0.0116	0.0116	TTC40->chr10:134621896-134756327:-,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	HEC6_ENDOMETRIUM	0	0.13	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000984
HEC6_ENDOMETRIUM	WDHD1--SOCS4	1	1	WDHD1	6099	chr14:55473998:-	SOCS4	31681	chr14:55498581:+	ONLY_REF_SPLICE	YES	32	23	0.06	0.08	0.0116	0.0116	LOCAL_INVERSION:-:+:[125],WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-,SOCS4->chr14:55493948-55516206:+,suppressor_of_cytokine_signaling_4	HEC6_ENDOMETRIUM	0.06	0.08	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000984
HMCB_SKIN	EWSR1--CREM	451	212	EWSR1	11554	chr22:29683123:+	CREM	42362	chr10:35495823:+	ONLY_REF_SPLICE	YES	289	160	0.7	0.81	5.0351	2.3668	{Klijn_CCL:Lung=1},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	HMCB_SKIN	0.7	0.81	7.4019	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	EWSR1--CREM	34	215	EWSR1	12735	chr22:29684775:+	CREM	42362	chr10:35495823:+	ONLY_REF_SPLICE	YES	99	160	0.72	0.61	0.3796	2.4003	{Klijn_CCL:Lung=1},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	HMCB_SKIN	0.61	0.72	2.7799	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	RP11-973F15.1--RP11-94A24.1	71	24	RP11-973F15.1	3763	chr8:123682599:-	RP11-94A24.1	7870	chr8:123429261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7927	0.2679	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	HMCB_SKIN	1	1	1.0606	TRUE	0	2	0	7	2	TRUE	ACH-000931
HMCB_SKIN	SCARF2--ZNF74	60	37	SCARF2	7345	chr22:20780420:-	ZNF74	14733	chr22:20754338:+	INCL_NON_REF_SPLICE	YES	488	79	0.17	0.55	0.6699	0.4131	LOCAL_INVERSION:-:+:[16129],SCARF2->chr22:20778874-20792146:-,scavenger_receptor_class_F_member_2,ZNF74->chr22:20748405-20762745:+,zinc_finger_protein_74	HMCB_SKIN	0.17	0.55	1.083	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	RP11-973F15.1--RP11-557C18.4	62	19	RP11-973F15.1	1734	chr8:123705612:-	RP11-557C18.4	7865	chr8:123989465:-	ONLY_REF_SPLICE	YES	241	0	0.25	1	0.6922	0.2121	RP11-973F15.1->chr8:123682624-123706345:-,RP11-557C18.4->chr8:123989266-123997869:-	HMCB_SKIN	0.25	1	0.9043	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	TIMM23B--LINC00843	59	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6587	0.2233	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HMCB_SKIN	1	1	0.882	TRUE	508	994	45	981	0	FALSE	ACH-000931
HMCB_SKIN	CHD6--RP5-1010E17.1	58	2	CHD6	1155	chr20:40246979:-	RP5-1010E17.1	56068	chr20:54054667:+	ONLY_REF_SPLICE	YES	2	0	0.97	1	0.6475	0.0223	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,RP5-1010E17.1->chr20:54039549-54084752:+	HMCB_SKIN	0.97	1	0.6698	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	EWSR1--CREM	2	214	EWSR1	12704	chr22:29684744:+	CREM	42362	chr10:35495823:+	ONLY_REF_SPLICE	YES	81	160	0.73	0.57	0.0223	2.3892	{Klijn_CCL:Lung=1},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	HMCB_SKIN	0.57	0.73	2.4115	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	MCFD2--HPCAL1	47	2	MCFD2	2674	chr2:47142862:-	HPCAL1	21336	chr2:10536961:+	ONLY_REF_SPLICE	YES	18	19	0.73	0.72	0.5247	0.0223	HGNC_GENEFAM,MCFD2->chr2:47129009-47168994:-,multiple_coagulation_factor_deficiency_2,HPCAL1->chr2:10443015-10567743:+,hippocalcin_like_1	HMCB_SKIN	0.72	0.73	0.547	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	TIMM23--RP11-464F9.1	40	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	178	3	0.19	0.93	0.4466	0.0335	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HMCB_SKIN	0.19	0.93	0.4801	TRUE	519	3926	326	965	0	FALSE	ACH-000931
HMCB_SKIN	EWSR1--CREM	9	111	EWSR1	12704	chr22:29684744:+	CREM	42421	chr10:35495882:+	INCL_NON_REF_SPLICE	YES	81	647	0.6	0.16	0.1005	1.2392	{Klijn_CCL:Lung=1},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	HMCB_SKIN	0.16	0.6	1.3397	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	RP11-973F15.1--RP11-557C18.4	32	13	RP11-973F15.1	1226	chr8:123706120:-	RP11-557C18.4	7865	chr8:123989465:-	ONLY_REF_SPLICE	YES	238	0	0.16	1	0.3573	0.1451	RP11-973F15.1->chr8:123682624-123706345:-,RP11-557C18.4->chr8:123989266-123997869:-	HMCB_SKIN	0.16	1	0.5024	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	DNM3--C1orf105	30	17	DNM3	1337	chr1:171810957:+	C1orf105	49717	chr1:172434439:+	ONLY_REF_SPLICE	YES	3	0	0.94	1	0.3349	0.1898	NEIGHBORS[2222],DNM3->chr1:171810621-172387606:+,dynamin_3,C1orf105->chr1:172389828-172437971:+,chromosome_1_open_reading_frame_105	HMCB_SKIN	0.94	1	0.5247	FALSE	0	0	0	1	0	FALSE	ACH-000931
HMCB_SKIN	EWSR1--CREM	3	110	EWSR1	11554	chr22:29683123:+	CREM	42421	chr10:35495882:+	INCL_NON_REF_SPLICE	YES	289	647	0.28	0.15	0.0335	1.2281	{Klijn_CCL:Lung=1},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	HMCB_SKIN	0.15	0.28	1.2616	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	SPTBN1--EML6	25	15	SPTBN1	8459	chr2:54786024:+	EML6	54951	chr2:55040369:+	ONLY_REF_SPLICE	YES	74	0	0.35	1	0.2791	0.1675	NEIGHBORS[53824],SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1,EML6->chr2:54950636-55199157:+,echinoderm_microtubule_associated_protein_like_6	HMCB_SKIN	0.35	1	0.4466	FALSE	0	1	0	1	0	FALSE	ACH-000931
HMCB_SKIN	RP11-973F15.1--RP11-96B2.1	27	6	RP11-973F15.1	3763	chr8:123682599:-	RP11-96B2.1	7930	chr8:123499705:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3014	0.067	RP11-973F15.1->chr8:123682624-123706345:-,RP11-96B2.1->chr8:123497754-123502054:-	HMCB_SKIN	1	1	0.3684	TRUE	0	2	0	4	2	TRUE	ACH-000931
HMCB_SKIN	NPM1P24--SET	27	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3014	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HMCB_SKIN	1	1	0.3014	TRUE	0	0	0	434	0	FALSE	ACH-000931
HMCB_SKIN	MT-ND6--MT-TE	20	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.2233	0.0112	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMCB_SKIN	0.95	1	0.2345	FALSE	499	1288	110	792	0	FALSE	ACH-000931
HMCB_SKIN	AC174470.1--P4HB	17	9	AC174470.1	4246	chr17:79781288:-	P4HB	11547	chr17:79813462:-	ONLY_REF_SPLICE	YES	48	1987	0.35	0.01	0.1898	0.1005	LOCAL_REARRANGEMENT:-:[16502],AC174470.1->chr17:79780293-79784533:-,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	HMCB_SKIN	0.01	0.35	0.2903	TRUE	0	0	0	1	0	FALSE	ACH-000931
HMCB_SKIN	RP11-319G9.5--WWOX	18	4	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	18	1	0.55	0.201	0.0447	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	HMCB_SKIN	0.55	1	0.2457	FALSE	154	425	28	76	0	FALSE	ACH-000931
HMCB_SKIN	TBL1XR1-AS1--RP11-292E2.4	17	3	TBL1XR1-AS1	1136	chr3:176762784:+	RP11-292E2.4	5416	chr3:153149646:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1898	0.0335	TBL1XR1-AS1->TBL1XR1_antisense_RNA_1,chr3:176762649-176765711:+,RP11-292E2.4->chr3:153149645-153161320:+	HMCB_SKIN	1	1	0.2233	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	CHD6--RP5-1010E17.1	17	2	CHD6	1155	chr20:40246979:-	RP5-1010E17.1	57243	chr20:54065403:+	ONLY_REF_SPLICE	YES	2	13	0.9	0.59	0.1898	0.0223	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,RP5-1010E17.1->chr20:54039549-54084752:+	HMCB_SKIN	0.59	0.9	0.2121	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	SPTBN1--EML6	11	5	SPTBN1	4816	chr2:54753703:+	EML6	54951	chr2:55040369:+	ONLY_REF_SPLICE	YES	57	0	0.22	1	0.1228	0.0558	NEIGHBORS[53824],SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1,EML6->chr2:54950636-55199157:+,echinoderm_microtubule_associated_protein_like_6	HMCB_SKIN	0.22	1	0.1786	FALSE	0	0	0	1	0	FALSE	ACH-000931
HMCB_SKIN	EWSR1--CREM	2	38	EWSR1	10342	chr22:29678546:+	CREM	42362	chr10:35495823:+	ONLY_REF_SPLICE	YES	492	160	0.08	0.2	0.0223	0.4242	{Klijn_CCL:Lung=1},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	HMCB_SKIN	0.08	0.2	0.4465	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	HSPBP1--GRK5	10	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1116	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HMCB_SKIN	1	1	0.1116	TRUE	1	39	0	134	39	FALSE	ACH-000931
HMCB_SKIN	NIPA2--POLA1	9	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1005	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	HMCB_SKIN	1	1	0.1005	TRUE	46	1352	75	139	0	FALSE	ACH-000931
HMCB_SKIN	ETV5--RP11-48F14.1	8	3	ETV5	15237	chr3:185774864:-	RP11-48F14.1	28618	chr3:186174335:-	ONLY_REF_SPLICE	YES	97	4	0.1	0.73	0.0893	0.0335	ETV5->ArcherDX_panel,ETS_variant_5,FoundationOne_panel,Oncogene{Bushman},chr3:185764097-185828107:-,RP11-48F14.1->chr3:186172771-186211450:-	HMCB_SKIN	0.1	0.73	0.1228	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	MT-ND6--MT-TE	6	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0.1116	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMCB_SKIN	1	1	0.1786	FALSE	499	1288	110	792	0	FALSE	ACH-000931
HMCB_SKIN	AP000525.9--LA16c-60G3.6	8	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	6	0	0.6	1	0.0893	0.0112	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HMCB_SKIN	0.6	1	0.1005	TRUE	0	42	0	133	42	FALSE	ACH-000931
HMCB_SKIN	ETV5--RP11-48F14.1	7	4	ETV5	15237	chr3:185774864:-	RP11-48F14.1	27534	chr3:186175419:-	ONLY_REF_SPLICE	YES	97	0	0.1	1	0.0782	0.0447	ETV5->ArcherDX_panel,ETS_variant_5,FoundationOne_panel,Oncogene{Bushman},chr3:185764097-185828107:-,RP11-48F14.1->chr3:186172771-186211450:-	HMCB_SKIN	0.1	1	0.1229	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	CHD6--RP5-1010E17.1	7	1	CHD6	1155	chr20:40246979:-	RP5-1010E17.1	61367	chr20:54084629:+	ONLY_REF_SPLICE	YES	2	15	0.8	0.35	0.0782	0.0112	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,RP5-1010E17.1->chr20:54039549-54084752:+	HMCB_SKIN	0.35	0.8	0.0894	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	RP11-634B7.4--TRIM58	6	5	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	2	192	0.85	0.05	0.067	0.0558	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	HMCB_SKIN	0.05	0.85	0.1228	TRUE	158	633	76	73	0	FALSE	ACH-000931
HMCB_SKIN	CHD6--RP5-1010E17.1	6	1	CHD6	1155	chr20:40246979:-	RP5-1010E17.1	60243	chr20:54083355:+	ONLY_REF_SPLICE	YES	2	19	0.78	0.27	0.067	0.0112	CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6,RP5-1010E17.1->chr20:54039549-54084752:+	HMCB_SKIN	0.27	0.78	0.0782	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	SAMD5--SASH1	6	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	13	9	0.35	0.44	0.067	0.0112	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HMCB_SKIN	0.35	0.44	0.0782	TRUE	53	396	64	110	0	FALSE	ACH-000931
HMCB_SKIN	FAM135B--COL22A1	5	4	FAM135B	1152	chr8:139508914:-	COL22A1	110829	chr8:139609213:-	ONLY_REF_SPLICE	YES	5	37	0.64	0.2	0.0558	0.0447	LOCAL_REARRANGEMENT:-:[91413],FAM135B->chr8:139142266-139509065:-,family_with_sequence_similarity_135_member_B,COL22A1->chr8:139600478-139926249:-,collagen_type_XXII_alpha_1	HMCB_SKIN	0.2	0.64	0.1005	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	MAF--RP11-679B19.2	5	3	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0.0335	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	HMCB_SKIN	1	1	0.0893	TRUE	48	25	3	38	0	FALSE	ACH-000931
HMCB_SKIN	MT-ND6--MT-TE	5	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0558	0.0223	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMCB_SKIN	0.88	1	0.0781	FALSE	499	1288	110	792	0	FALSE	ACH-000931
HMCB_SKIN	SCARB1--UBC	5	2	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	427	27	0.02	0.21	0.0558	0.0223	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	HMCB_SKIN	0.02	0.21	0.0781	TRUE	55	66	6	101	0	FALSE	ACH-000931
HMCB_SKIN	MT-ND3--MT-CO3	4	4	MT-ND3	1064	chrM:10122:+	MT-CO3	5089	chrM:9949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0.0447	LOCAL_REARRANGEMENT:+:[69],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HMCB_SKIN	1	1	0.0894	FALSE	2	2	0	11	0	FALSE	ACH-000931
HMCB_SKIN	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMCB_SKIN	1	1	0.0558	FALSE	499	1288	110	792	0	FALSE	ACH-000931
HMCB_SKIN	NUDT1--HACE1	5	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0558	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	HMCB_SKIN	1	1	0.0558	TRUE	1	20	0	20	17	FALSE	ACH-000931
HMCB_SKIN	RP11-476K15.1--CTD-2015H3.2	5	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0558	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HMCB_SKIN	1	1	0.0558	FALSE	0	46	0	73	0	FALSE	ACH-000931
HMCB_SKIN	YIPF6--BAZ1B	5	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0558	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	HMCB_SKIN	1	1	0.0558	TRUE	1	23	1	24	8	FALSE	ACH-000931
HMCB_SKIN	RP11-973F15.1--RP11-94A24.1	2	11	RP11-973F15.1	2854	chr8:123683508:-	RP11-94A24.1	7870	chr8:123429261:-	ONLY_REF_SPLICE	YES	72	0	0.15	1	0.0223	0.1228	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	HMCB_SKIN	0.15	1	0.1451	TRUE	0	2	0	7	2	TRUE	ACH-000931
HMCB_SKIN	AL163953.3--PTGER2	4	2	AL163953.3	3068	chr14:53684773:+	PTGER2	15234	chr14:52793939:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0447	0.0223	AL163953.3->chr14:53635772-54153976:+,PTGER2->chr14:52781023-52795324:+,prostaglandin_E_receptor_2	HMCB_SKIN	0.86	1	0.067	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	RP11-123O10.4--GRIP1	4	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0.0112	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HMCB_SKIN	1	1	0.0559	FALSE	416	2512	207	587	0	FALSE	ACH-000931
HMCB_SKIN	RP11-973F15.1--RP11-96B2.1	4	1	RP11-973F15.1	1226	chr8:123706120:-	RP11-96B2.1	7930	chr8:123499705:-	ONLY_REF_SPLICE	YES	238	0	0.02	1	0.0447	0.0112	RP11-973F15.1->chr8:123682624-123706345:-,RP11-96B2.1->chr8:123497754-123502054:-	HMCB_SKIN	0.02	1	0.0559	TRUE	0	8	0	3	8	TRUE	ACH-000931
HMCB_SKIN	RP11-973F15.1--RP11-94A24.1	2	7	RP11-973F15.1	1226	chr8:123706120:-	RP11-94A24.1	7870	chr8:123429261:-	ONLY_REF_SPLICE	YES	238	0	0.04	1	0.0223	0.0782	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	HMCB_SKIN	0.04	1	0.1005	TRUE	0	2	0	5	1	TRUE	ACH-000931
HMCB_SKIN	SPTBN1--EML6	1	11	SPTBN1	8459	chr2:54786024:+	EML6	56111	chr2:55043924:+	ONLY_REF_SPLICE	YES	74	3	0.14	0.8	0.0112	0.1228	NEIGHBORS[53824],SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1,EML6->chr2:54950636-55199157:+,echinoderm_microtubule_associated_protein_like_6	HMCB_SKIN	0.14	0.8	0.134	FALSE	0	1	0	1	0	FALSE	ACH-000931
HMCB_SKIN	FTH1--ACTB	3	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	5608	1	0	0.83	0.0335	0.0223	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HMCB_SKIN	0	0.83	0.0558	FALSE	1	0	0	97	0	FALSE	ACH-000931
HMCB_SKIN	RP11-444D3.1--SOX5	3	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	18	1	0.22	0.0335	0.0223	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HMCB_SKIN	0.22	1	0.0558	TRUE	477	1352	189	275	0	FALSE	ACH-000931
HMCB_SKIN	DDHD2--BAG4	3	1	DDHD2	24435	chr8:38130960:+	BAG4	30243	chr8:38050206:+	ONLY_REF_SPLICE	YES	0	32	1	0.11	0.0335	0.0112	LOCAL_REARRANGEMENT:+:[11917],DDHD2->DDHD_domain_containing_2,chr8:38082736-38133076:+,BAG4->BCL2_associated_athanogene_4,chr8:38034051-38070819:+	HMCB_SKIN	0.11	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	DSCR4--KCNJ6	3	0	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	HMCB_SKIN	1	1	0.0335	FALSE	0	24	0	27	0	FALSE	ACH-000931
HMCB_SKIN	EWSR1--CREM	3	0	EWSR1	10283	chr22:29678487:+	CREM	43921	chr10:35500584:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	{Klijn_CCL:Lung=1},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	HMCB_SKIN	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HMCB_SKIN	1	1	0.0335	TRUE	0	0	0	434	0	FALSE	ACH-000931
HMCB_SKIN	RP11-120D5.1--MID1	2	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	22	0.75	0.21	0.0223	0.0447	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HMCB_SKIN	0.21	0.75	0.067	FALSE	16	356	14	466	0	FALSE	ACH-000931
HMCB_SKIN	SLC7A2--COL11A1	3	0	SLC7A2	16641	chr8:17422837:+	COL11A1	53027	chr1:103449723:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	SLC7A2->chr8:17354597-17428082:+,solute_carrier_family_7_member_2,COL11A1->Oncogene{Bushman},chr1:103342023-103574052:-,collagen_type_XI_alpha_1	HMCB_SKIN	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	SLC7A5--ATP5G2	3	0	SLC7A5	8052	chr16:87871490:-	ATP5G2	21321	chr12:54066421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	HMCB_SKIN	1	1	0.0335	TRUE	0	0	0	7	0	TRUE	ACH-000931
HMCB_SKIN	SPTBN1--EML6	1	8	SPTBN1	8459	chr2:54786024:+	EML6	57210	chr2:55047531:+	ONLY_REF_SPLICE	YES	74	6	0.11	0.6	0.0112	0.0893	NEIGHBORS[53824],SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1,EML6->chr2:54950636-55199157:+,echinoderm_microtubule_associated_protein_like_6	HMCB_SKIN	0.11	0.6	0.1005	FALSE	0	0	0	1	0	FALSE	ACH-000931
HMCB_SKIN	AC174470.1--P4HB	1	7	AC174470.1	3371	chr17:79782163:-	P4HB	11547	chr17:79813462:-	ONLY_REF_SPLICE	NO	64	1987	0.11	0	0.0112	0.0782	LOCAL_REARRANGEMENT:-:[16502],AC174470.1->chr17:79780293-79784533:-,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	HMCB_SKIN	0	0.11	0.0894	FALSE	0	0	0	1	0	FALSE	ACH-000931
HMCB_SKIN	YWHAE--CRK	2	3	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1943	101	0	0.05	0.0223	0.0335	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	HMCB_SKIN	0	0.05	0.0558	FALSE	6	50	7	115	0	FALSE	ACH-000931
HMCB_SKIN	MCFD2--HPCAL1	2	2	MCFD2	1284	chr2:47168711:-	HPCAL1	21336	chr2:10536961:+	ONLY_REF_SPLICE	YES	15	19	0.21	0.17	0.0223	0.0223	HGNC_GENEFAM,MCFD2->chr2:47129009-47168994:-,multiple_coagulation_factor_deficiency_2,HPCAL1->chr2:10443015-10567743:+,hippocalcin_like_1	HMCB_SKIN	0.17	0.21	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	COL11A1--IVNS1ABP	2	1	COL11A1	4969	chr1:103540174:-	IVNS1ABP	70014	chr1:185274775:-	ONLY_REF_SPLICE	YES	2929	166	0	0.02	0.0223	0.0112	{Klijn_CCL:Lung=1},COL11A1->Oncogene{Bushman},chr1:103342023-103574052:-,collagen_type_XI_alpha_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	HMCB_SKIN	0	0.02	0.0335	FALSE	0	0	0	3	0	FALSE	ACH-000931
HMCB_SKIN	PTGDS--MFSD10	2	1	PTGDS	1189	chr9:139872144:+	MFSD10	11902	chr4:2935671:-	ONLY_REF_SPLICE	YES	1019	19	0	0.14	0.0223	0.0112	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:3=pct:0.5]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1},PTGDS->chr9:139871956-139879887:+,prostaglandin_D2_synthase,MFSD10->chr4:2932288-2936586:-,major_facilitator_superfamily_domain_containing_10	HMCB_SKIN	0	0.14	0.0335	FALSE	3	5	0	1	0	FALSE	ACH-000931
HMCB_SKIN	RASL10A--RP11-324I22.2	2	1	RASL10A	1371	chr22:29715298:-	RP11-324I22.2	9369	chr10:35509028:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0223	0.0112	RASL10A->RAS_like_family_10_member_A,chr22:29708922-29715668:-,RP11-324I22.2->chr10:35508822-35519526:-	HMCB_SKIN	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	RP11-973F15.1--RP11-96B2.1	2	1	RP11-973F15.1	1734	chr8:123705612:-	RP11-96B2.1	7930	chr8:123499705:-	ONLY_REF_SPLICE	YES	241	0	0.01	1	0.0223	0.0112	RP11-973F15.1->chr8:123682624-123706345:-,RP11-96B2.1->chr8:123497754-123502054:-	HMCB_SKIN	0.01	1	0.0335	FALSE	0	8	0	3	8	FALSE	ACH-000931
HMCB_SKIN	CPOX--NSUN3	2	0	CPOX	3299	chr3:98309476:-	NSUN3	24885	chr3:93845055:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	CPOX->chr3:98239976-98312567:-,coproporphyrinogen_oxidase,NSUN3->NOP2/Sun_RNA_methyltransferase_family_member_3,chr3:93781760-93847389:+	HMCB_SKIN	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	FAM135B--COL22A1	1	4	FAM135B	1152	chr8:139508914:-	COL22A1	111896	chr8:139606442:-	ONLY_REF_SPLICE	YES	5	28	0.5	0.15	0.0112	0.0447	LOCAL_REARRANGEMENT:-:[91413],FAM135B->chr8:139142266-139509065:-,family_with_sequence_similarity_135_member_B,COL22A1->chr8:139600478-139926249:-,collagen_type_XXII_alpha_1	HMCB_SKIN	0.15	0.5	0.0559	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	HS2ST1--SEP15	2	0	HS2ST1	1513	chr1:87380843:+	SEP15	26013	chr1:87369131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	HMCB_SKIN	1	1	0.0223	TRUE	0	2	0	9	0	TRUE	ACH-000931
HMCB_SKIN	SPTBN1--EML6	2	0	SPTBN1	4816	chr2:54753703:+	EML6	61803	chr2:55074623:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NEIGHBORS[53824],SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1,EML6->chr2:54950636-55199157:+,echinoderm_microtubule_associated_protein_like_6	HMCB_SKIN	1	1	0.0223	FALSE	0	0	0	1	0	FALSE	ACH-000931
HMCB_SKIN	TMLHE--VAMP7	2	0	TMLHE	2332	chrX:154842453:-	VAMP7	22451	chrX:155169365:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,VAMP7->chrX:155110956-155173433:+,chrY:59213962-59276439:+,vesicle_associated_membrane_protein_7	HMCB_SKIN	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	RP11-120D5.1--MID1	1	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	22	0.8	0.15	0.0112	0.0335	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HMCB_SKIN	0.15	0.8	0.0447	FALSE	0	48	1	163	0	FALSE	ACH-000931
HMCB_SKIN	SCARF2--ZNF74	1	3	SCARF2	6195	chr22:20781685:-	ZNF74	15317	chr22:20754922:+	ONLY_REF_SPLICE	YES	520	76	0.01	0.05	0.0112	0.0335	LOCAL_INVERSION:-:+:[16129],SCARF2->chr22:20778874-20792146:-,scavenger_receptor_class_F_member_2,ZNF74->chr22:20748405-20762745:+,zinc_finger_protein_74	HMCB_SKIN	0.01	0.05	0.0447	FALSE	0	0	0	1	0	FALSE	ACH-000931
HMCB_SKIN	MCFD2--HPCAL1	1	2	MCFD2	2674	chr2:47142862:-	HPCAL1	20170	chr2:10494342:+	ONLY_REF_SPLICE	YES	18	19	0.14	0.14	0.0112	0.0223	HGNC_GENEFAM,MCFD2->chr2:47129009-47168994:-,multiple_coagulation_factor_deficiency_2,HPCAL1->chr2:10443015-10567743:+,hippocalcin_like_1	HMCB_SKIN	0.14	0.14	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000931
HMCB_SKIN	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	18	1	0.14	0.0112	0.0223	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HMCB_SKIN	0.14	1	0.0335	TRUE	274	363	69	150	0	FALSE	ACH-000931
HMCB_SKIN	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	21	1	0.12	0.0112	0.0223	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HMCB_SKIN	0.12	1	0.0335	TRUE	160	277	29	98	0	FALSE	ACH-000931
HMCB_SKIN	SCARB1--UBC	1	2	SCARB1	10920	chr12:125298748:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	351	27	0.01	0.1	0.0112	0.0223	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	HMCB_SKIN	0.01	0.1	0.0335	FALSE	1	0	0	5	0	FALSE	ACH-000931
HMCB_SKIN	SPTBN1--EML6	1	2	SPTBN1	4816	chr2:54753703:+	EML6	57210	chr2:55047531:+	ONLY_REF_SPLICE	NO	57	6	0.05	0.33	0.0112	0.0223	NEIGHBORS[53824],SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1,EML6->chr2:54950636-55199157:+,echinoderm_microtubule_associated_protein_like_6	HMCB_SKIN	0.05	0.33	0.0335	FALSE	0	0	0	1	0	FALSE	ACH-000931
HMCB_SKIN	C19orf25--DAZAP1	1	1	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	56	333	0.03	0.01	0.0112	0.0112	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	HMCB_SKIN	0.01	0.03	0.0224	FALSE	6	7	1	24	0	FALSE	ACH-000931
SKMEL24_SKIN	TIMM23B--LINC00843	88	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8226	0.1496	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKMEL24_SKIN	1	1	0.9722	TRUE	508	994	45	981	0	FALSE	ACH-000822
SKMEL24_SKIN	TIMM23--RP11-464F9.1	61	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	86	0	0.42	1	0.5702	0.0187	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKMEL24_SKIN	0.42	1	0.5889	TRUE	519	3926	326	965	0	FALSE	ACH-000822
SKMEL24_SKIN	RP11-141M1.3--STARD13	38	19	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	25	76	0.7	0.43	0.3552	0.1776	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMEL24_SKIN	0.43	0.7	0.5328	FALSE	141	264	50	91	0	FALSE	ACH-000822
SKMEL24_SKIN	MT-ND6--MT-ND5	38	1	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1327	1	0.03	0.3552	0.0093	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SKMEL24_SKIN	0.03	1	0.3645	FALSE	101	855	57	72	0	FALSE	ACH-000822
SKMEL24_SKIN	MT-TA--MT-TC	33	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3085	0.028	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL24_SKIN	1	1	0.3365	FALSE	462	80	0	856	0	FALSE	ACH-000822
SKMEL24_SKIN	MTAP--CDKN2B-AS1	31	10	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	40771	chr9:22112319:+	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.2898	0.0935	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	SKMEL24_SKIN	0.98	1	0.3833	FALSE	0	5	0	7	0	FALSE	ACH-000822
SKMEL24_SKIN	COL8A1--CMSS1	29	6	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	707	172	0.05	0.17	0.2711	0.0561	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SKMEL24_SKIN	0.05	0.17	0.3272	FALSE	76	19	3	26	0	FALSE	ACH-000822
SKMEL24_SKIN	RP11-141M1.3--STARD13	23	23	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	27	76	0.63	0.38	0.215	0.215	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMEL24_SKIN	0.38	0.63	0.43	FALSE	49	120	16	70	0	FALSE	ACH-000822
SKMEL24_SKIN	MT-ND6--MT-TE	25	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2337	0.0093	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL24_SKIN	1	1	0.243	FALSE	499	1288	110	792	0	FALSE	ACH-000822
SKMEL24_SKIN	NRIP1--AF127936.7	24	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.9	1	0.2243	0.0187	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKMEL24_SKIN	0.9	1	0.243	FALSE	292	1546	117	613	0	FALSE	ACH-000822
SKMEL24_SKIN	WI2-1896O14.1--RP11-353N4.1	23	4	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.215	0.0374	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	SKMEL24_SKIN	1	1	0.2524	TRUE	361	258	24	38	0	FALSE	ACH-000822
SKMEL24_SKIN	ZNF654--HMGB2	23	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.215	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKMEL24_SKIN	1	1	0.215	TRUE	0	0	0	518	0	FALSE	ACH-000822
SKMEL24_SKIN	CTD-2337A12.1--CAST	20	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	33	1	0.39	0.187	0.0093	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SKMEL24_SKIN	0.39	1	0.1963	TRUE	347	1186	183	220	0	FALSE	ACH-000822
SKMEL24_SKIN	MT-ND6--MT-TE	19	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1776	0.0093	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL24_SKIN	1	1	0.1869	FALSE	499	1288	110	792	0	FALSE	ACH-000822
SKMEL24_SKIN	MT-ND6--MT-TE	13	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1215	0.0935	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL24_SKIN	0.96	1	0.215	FALSE	499	1288	110	792	0	FALSE	ACH-000822
SKMEL24_SKIN	NRIP1--AF127936.7	10	7	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	30	0	0.36	1	0.0935	0.0654	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKMEL24_SKIN	0.36	1	0.1589	FALSE	125	705	46	456	0	FALSE	ACH-000822
SKMEL24_SKIN	RP11-444D3.1--SOX5	9	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	10	1	0.62	0.0841	0.0654	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL24_SKIN	0.62	1	0.1495	TRUE	477	1352	189	275	0	FALSE	ACH-000822
SKMEL24_SKIN	RP11-141M1.3--STARD13	4	26	RP11-141M1.3	11074	chr13:33933602:-	STARD13	15567	chr13:33924736:-	INCL_NON_REF_SPLICE	YES	27	0	0.53	1	0.0374	0.243	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMEL24_SKIN	0.53	1	0.2804	FALSE	0	0	0	3	0	FALSE	ACH-000822
SKMEL24_SKIN	RP4-565E6.1--HYDIN	10	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0935	0.0187	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SKMEL24_SKIN	1	1	0.1122	TRUE	456	1387	91	133	0	FALSE	ACH-000822
SKMEL24_SKIN	TIMP3--MT-ND4	10	0	TIMP3	5621	chr22:33255392:+	MT-ND4	12727	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0935	0	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SKMEL24_SKIN	1	1	0.0935	FALSE	0	0	0	10	0	FALSE	ACH-000822
SKMEL24_SKIN	AC024084.1--AC009784.3	9	1	AC024084.1	3174	chr7:135743253:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0841	0.0093	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	SKMEL24_SKIN	1	1	0.0934	FALSE	2	5	0	14	0	FALSE	ACH-000822
SKMEL24_SKIN	MT-ND6--MT-TE	5	15	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0467	0.1402	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL24_SKIN	0.95	1	0.1869	FALSE	499	1288	110	792	0	FALSE	ACH-000822
SKMEL24_SKIN	MT-TA--MT-TC	8	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0748	0.028	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL24_SKIN	1	1	0.1028	FALSE	462	80	0	856	0	FALSE	ACH-000822
SKMEL24_SKIN	CTD-2008L17.1--RP11-456O19.2	8	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0748	0.0187	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SKMEL24_SKIN	0.91	1	0.0935	FALSE	33	240	4	98	0	FALSE	ACH-000822
SKMEL24_SKIN	CTD-2023N9.1--CTD-2023N9.2	8	0	CTD-2023N9.1	1119	chr5:56691005:+	CTD-2023N9.2	11053	chr5:56910004:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0748	0	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	SKMEL24_SKIN	1	1	0.0748	FALSE	0	0	0	9	0	FALSE	ACH-000822
SKMEL24_SKIN	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0748	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL24_SKIN	1	1	0.0748	FALSE	462	80	0	856	0	FALSE	ACH-000822
SKMEL24_SKIN	RP11-634B7.4--TRIM58	7	2	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	96	1	0.09	0.0654	0.0187	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	SKMEL24_SKIN	0.09	1	0.0841	TRUE	158	633	76	73	0	FALSE	ACH-000822
SKMEL24_SKIN	MT-ND6--MT-ND5	6	1	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	1288	1	0.01	0.0561	0.0093	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SKMEL24_SKIN	0.01	1	0.0654	FALSE	101	855	57	72	0	FALSE	ACH-000822
SKMEL24_SKIN	MT-ND6--MT-TE	4	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0.0841	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL24_SKIN	1	1	0.1215	FALSE	499	1288	110	792	0	FALSE	ACH-000822
SKMEL24_SKIN	RP11-444D3.1--SOX5	5	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	10	1	0.5	0.0467	0.0467	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL24_SKIN	0.5	1	0.0934	TRUE	274	363	69	150	0	FALSE	ACH-000822
SKMEL24_SKIN	RP11-141M1.3--STARD13	1	20	RP11-141M1.3	8903	chr13:34013828:-	STARD13	19773	chr13:33850344:-	ONLY_REF_SPLICE	NO	25	91	0.46	0.19	0.0093	0.187	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMEL24_SKIN	0.19	0.46	0.1963	FALSE	0	1	0	3	0	FALSE	ACH-000822
SKMEL24_SKIN	RP11-141M1.3--STARD13	2	13	RP11-141M1.3	5599	chr13:34098375:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	NO	31	76	0.33	0.16	0.0187	0.1215	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMEL24_SKIN	0.16	0.33	0.1402	FALSE	9	22	2	16	0	FALSE	ACH-000822
SKMEL24_SKIN	NRIP1--AF127936.7	3	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	33	0	0.25	1	0.028	0.0748	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKMEL24_SKIN	0.25	1	0.1028	FALSE	164	806	69	479	0	FALSE	ACH-000822
SKMEL24_SKIN	RP11-141M1.3--STARD13	1	14	RP11-141M1.3	6791	chr13:34094095:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	37	76	0.29	0.16	0.0093	0.1309	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMEL24_SKIN	0.16	0.29	0.1402	FALSE	1	2	1	7	0	FALSE	ACH-000822
SKMEL24_SKIN	RP11-466L17.1--RP11-90C4.1	4	1	RP11-466L17.1	2240	chr1:56080675:+	RP11-90C4.1	11159	chr1:56297937:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0.0093	NEIGHBORS[88805],RP11-466L17.1->chr1:56046710-56200675:+,RP11-90C4.1->chr1:56289480-56333921:+	SKMEL24_SKIN	1	1	0.0467	FALSE	351	187	22	6	0	FALSE	ACH-000822
SKMEL24_SKIN	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0.0467	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKMEL24_SKIN	1	1	0.0747	FALSE	515	4851	409	746	0	FALSE	ACH-000822
SKMEL24_SKIN	HLA-B--FXYD5	4	0	HLA-B	3042	chr6:31322924:-	FXYD5	15388	chr19:35657179:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0	HLA-B->chr6:31321649-31324965:-,major_histocompatibility_complex,_class_I,_B,FXYD5->FXYD_domain_containing_ion_transport_regulator_5,Oncogene{Bushman},chr19:35645633-35660786:+	SKMEL24_SKIN	1	1	0.0374	FALSE	0	0	0	1	0	FALSE	ACH-000822
SKMEL24_SKIN	MT-ND6--MT-ND5	4	0	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SKMEL24_SKIN	1	1	0.0374	FALSE	101	855	57	72	0	FALSE	ACH-000822
SKMEL24_SKIN	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL24_SKIN	1	1	0.0374	FALSE	499	1288	110	792	0	FALSE	ACH-000822
SKMEL24_SKIN	PRR16--CTD-2334D19.1	4	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKMEL24_SKIN	1	1	0.0374	FALSE	56	216	12	147	0	FALSE	ACH-000822
SKMEL24_SKIN	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.028	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL24_SKIN	1	1	0.056	FALSE	462	80	0	856	0	FALSE	ACH-000822
SKMEL24_SKIN	CTD-2023N9.1--CTD-2023N9.2	3	2	CTD-2023N9.1	1119	chr5:56691005:+	CTD-2023N9.2	7902	chr5:56869858:+	INCL_NON_REF_SPLICE	YES	18	0	0.22	1	0.028	0.0187	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	SKMEL24_SKIN	0.22	1	0.0467	FALSE	0	0	0	6	0	FALSE	ACH-000822
SKMEL24_SKIN	DPH6-AS1--RP11-684B21.1	3	2	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	7	0	0.42	1	0.028	0.0187	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	SKMEL24_SKIN	0.42	1	0.0467	TRUE	17	119	17	33	0	FALSE	ACH-000822
SKMEL24_SKIN	SAMD5--SASH1	3	2	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	4	13	0.56	0.28	0.028	0.0187	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SKMEL24_SKIN	0.28	0.56	0.0467	TRUE	53	396	64	110	0	FALSE	ACH-000822
SKMEL24_SKIN	MT-ND6--MT-ND5	3	1	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	2397	1	0	0.028	0.0093	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SKMEL24_SKIN	0	1	0.0373	FALSE	101	855	57	72	0	FALSE	ACH-000822
SKMEL24_SKIN	RB1--ITM2B	3	1	RB1	17872	chr13:48955579:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	86	945	0.04	0	0.028	0.0093	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	SKMEL24_SKIN	0	0.04	0.0373	FALSE	27	49	8	8	0	FALSE	ACH-000822
SKMEL24_SKIN	RNF152--RP11-879F14.1	3	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.028	0.0093	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	SKMEL24_SKIN	0.67	1	0.0373	FALSE	275	472	65	43	0	FALSE	ACH-000822
SKMEL24_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL24_SKIN	1	1	0.028	FALSE	499	1288	110	792	0	FALSE	ACH-000822
SKMEL24_SKIN	PDIA4--S100B	3	0	PDIA4	6371	chr7:148709401:-	S100B	15347	chr21:48024983:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	PDIA4->chr7:148700154-148725733:-,protein_disulfide_isomerase_family_A_member_4,S100B->Oncogene{Bushman},S100_calcium_binding_protein_B,chr21:48018875-48025121:-	SKMEL24_SKIN	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000822
SKMEL24_SKIN	PSAP--MT-ND4L	3	0	PSAP	8540	chr10:73581661:-	MT-ND4L	16468	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL24_SKIN	1	1	0.028	FALSE	0	0	0	3	0	FALSE	ACH-000822
SKMEL24_SKIN	SERPINE2--TIMP3	3	0	SERPINE2	7414	chr2:224866602:-	TIMP3	27505	chr22:33255755:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2,TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+	SKMEL24_SKIN	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000822
SKMEL24_SKIN	RP11-444D3.1--SOX5	1	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	11	1	0.42	0.0093	0.0654	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL24_SKIN	0.42	1	0.0747	TRUE	160	277	29	98	0	FALSE	ACH-000822
SKMEL24_SKIN	HLA-DRB1--HLA-DQA1	2	2	HLA-DRB1	1206	chr6:32557420:-	HLA-DQA1	15643	chr6:32609087:+	ONLY_REF_SPLICE	YES	3218	1579	0	0	0.0187	0.0187	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[38331],HLA-DRB1->chr6:32546546-32557625:-,major_histocompatibility_complex,_class_II,_DR_beta_1,HLA-DQA1->chr6:32595956-32614839:+,major_histocompatibility_complex,_class_II,_DQ_alpha_1	SKMEL24_SKIN	0	0	0.0374	FALSE	0	0	0	1	0	FALSE	ACH-000822
SKMEL24_SKIN	IKBIP--SLC25A3	2	2	IKBIP	2709	chr12:99028074:-	SLC25A3	14713	chr12:98991634:+	ONLY_REF_SPLICE	YES	335	797	0.01	0	0.0187	0.0187	LOCAL_INVERSION:-:+:[11237],IKBIP->IKBKB_interacting_protein,chr12:99007183-99038891:-,SLC25A3->chr12:98987369-98995946:+,solute_carrier_family_25_member_3	SKMEL24_SKIN	0	0.01	0.0374	FALSE	0	0	0	3	0	FALSE	ACH-000822
SKMEL24_SKIN	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	79	1	0.05	0.0187	0.0187	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKMEL24_SKIN	0.05	1	0.0374	FALSE	16	356	14	466	0	FALSE	ACH-000822
SKMEL24_SKIN	CHCHD3--EXOC4	2	1	CHCHD3	7933	chr7:132659929:-	EXOC4	32133	chr7:133160082:+	ONLY_REF_SPLICE	YES	235	95	0.01	0.03	0.0187	0.0093	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	SKMEL24_SKIN	0.01	0.03	0.028	FALSE	0	0	0	4	0	FALSE	ACH-000822
SKMEL24_SKIN	CTD-2023N9.1--CTD-2023N9.2	2	1	CTD-2023N9.1	3408	chr5:56792744:+	CTD-2023N9.2	11053	chr5:56910004:+	ONLY_REF_SPLICE	NO	25	3	0.11	0.5	0.0187	0.0093	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	SKMEL24_SKIN	0.11	0.5	0.028	FALSE	0	0	0	7	0	FALSE	ACH-000822
SKMEL24_SKIN	HPN-AS1--LGI4	2	1	HPN-AS1	1076	chr19:35597133:-	LGI4	12190	chr19:35622946:-	ONLY_REF_SPLICE	YES	73	40	0.04	0.07	0.0187	0.0093	GTEx_FI:{Nerve=[count:18=pct:10.6],Esophagus=[count:4=pct:1.0],Colon=[count:3=pct:1.6],Blood_Vessel=[count:1=pct:0.3],Prostate=[count:1=pct:1.6]},LOCAL_REARRANGEMENT:-:[18209],HPN-AS1->HPN_antisense_RNA_1,chr19:35549963-35597208:-,LGI4->chr19:35615417-35633355:-,leucine-rich_repeat_LGI_family_member_4	SKMEL24_SKIN	0.04	0.07	0.028	TRUE	26	21	0	3	0	FALSE	ACH-000822
SKMEL24_SKIN	AC073130.3--TES	2	0	AC073130.3	1065	chr7:115967886:-	TES	16862	chr7:115897348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	NEIGHBORS_OVERLAP:-:+:[20854],AC073130.3->chr7:115877983-115967950:-,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	SKMEL24_SKIN	1	1	0.0187	FALSE	0	1	0	2	0	FALSE	ACH-000822
SKMEL24_SKIN	CTD-2023N9.1--CTD-2023N9.2	2	0	CTD-2023N9.1	1119	chr5:56691005:+	CTD-2023N9.2	8972	chr5:56873661:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	SKMEL24_SKIN	1	1	0.0187	FALSE	0	0	0	1	0	FALSE	ACH-000822
SKMEL24_SKIN	DCAF8--COPA	2	0	DCAF8	1076	chr1:160254845:-	COPA	34168	chr1:160295442:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	HGNC_GENEFAM,LOCAL_INVERSION:-,chr1:-:[4143],DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-,COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha	SKMEL24_SKIN	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000822
SKMEL24_SKIN	ERRFI1--UBE2J2	2	0	ERRFI1	1151	chr1:8086218:-	UBE2J2	19343	chr1:1192690:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-,UBE2J2->chr1:1189289-1209265:-,ubiquitin_conjugating_enzyme_E2_J2	SKMEL24_SKIN	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000822
SKMEL24_SKIN	MATR3--CTNNA1	2	0	MATR3	9772	chr5:138629494:+	CTNNA1	57245	chr5:138221901:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	SKMEL24_SKIN	1	1	0.0187	TRUE	2	3	0	5	0	FALSE	ACH-000822
SKMEL24_SKIN	MBTD1--RSAD1	2	0	MBTD1	2021	chr17:49336504:-	RSAD1	27838	chr17:48559452:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1,RSAD1->chr17:48556161-48563336:+,radical_S-adenosyl_methionine_domain_containing_1	SKMEL24_SKIN	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000822
SKMEL24_SKIN	MOSPD2--PIR	2	0	MOSPD2	1318	chrX:14891880:+	PIR	32654	chrX:15425672:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	MOSPD2->chrX:14891563-14940449:+,motile_sperm_domain_containing_2,PIR->chrX:15402921-15511687:-,pirin	SKMEL24_SKIN	1	1	0.0187	TRUE	1	9	0	3	1	TRUE	ACH-000822
SKMEL24_SKIN	RAB8B--ANXA2	2	0	RAB8B	1280	chr15:63481947:+	ANXA2	29428	chr15:60678285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},{Klijn_CCL:Urinary_Bladder=1},RAB8B->RAB8B,_member_RAS_oncogene_family,chr15:63481668-63559981:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	SKMEL24_SKIN	1	1	0.0187	TRUE	0	0	0	2	0	TRUE	ACH-000822
SKMEL24_SKIN	SPARC--MFSD12	2	0	SPARC	8469	chr5:151051134:-	MFSD12	27039	chr19:3547545:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,MFSD12->chr19:3538259-3574288:-,major_facilitator_superfamily_domain_containing_12	SKMEL24_SKIN	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000822
SKMEL24_SKIN	TEAD1--BTBD10	2	0	TEAD1	2140	chr11:12697108:+	BTBD10	34078	chr11:13443385:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,BTBD10->BTB_domain_containing_10,chr11:13409548-13484844:-	SKMEL24_SKIN	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000822
SKMEL24_SKIN	ZEB2--TEX41	2	0	ZEB2	5479	chr2:145274845:-	TEX41	71079	chr2:145929565:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,TEX41->chr2:145425534-145940216:+,testis_expressed_41_(non-protein_coding)	SKMEL24_SKIN	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000822
SKMEL24_SKIN	CD44--PDHX	1	2	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	2114	105	0	0.03	0.0093	0.0187	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SKMEL24_SKIN	0	0.03	0.028	FALSE	0	20	0	35	2	FALSE	ACH-000822
SKMEL24_SKIN	SERPINE2--ANXA2	1	2	SERPINE2	12591	chr2:224847398:-	ANXA2	39281	chr15:60656722:-	ONLY_REF_SPLICE	YES	18411	4691	0	0	0.0093	0.0187	SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2,ANXA2->annexin_A2,chr15:60639333-60695082:-	SKMEL24_SKIN	0	0	0.028	FALSE	0	0	0	1	0	FALSE	ACH-000822
SKMEL24_SKIN	AC024084.1--AC009784.3	1	1	AC024084.1	1028	chr7:135710536:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	NO	0	9	1	0.18	0.0093	0.0093	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	SKMEL24_SKIN	0.18	1	0.0186	FALSE	1	1	0	2	0	FALSE	ACH-000822
SKMEL24_SKIN	AC024084.1--AC009784.3	1	1	AC024084.1	2134	chr7:135715781:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0093	0.0093	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	SKMEL24_SKIN	1	1	0.0186	FALSE	1	6	0	14	0	FALSE	ACH-000822
SKMEL24_SKIN	AC073130.3--TES	1	1	AC073130.3	1065	chr7:115967886:-	TES	11067	chr7:115874588:+	ONLY_REF_SPLICE	YES	2	234	0.5	0.01	0.0093	0.0093	NEIGHBORS_OVERLAP:-:+:[20854],AC073130.3->chr7:115877983-115967950:-,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	SKMEL24_SKIN	0.01	0.5	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000822
SKMEL24_SKIN	CD44--PDHX	1	1	CD44	6502	chr11:35211612:+	PDHX	45504	chr11:35041755:+	ONLY_REF_SPLICE	YES	2114	2	0	0.5	0.0093	0.0093	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SKMEL24_SKIN	0	0.5	0.0186	FALSE	0	0	0	2	0	FALSE	ACH-000822
SKMEL24_SKIN	CD44--PDHX	1	1	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	2220	105	0	0.02	0.0093	0.0093	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SKMEL24_SKIN	0	0.02	0.0186	FALSE	0	7	0	19	1	FALSE	ACH-000822
SKMEL24_SKIN	CMC4--USP32	1	1	CMC4	1669	chrX:154298969:-	USP32	23207	chr17:58332619:-	ONLY_REF_SPLICE	NO	51	49	0.04	0.04	0.0093	0.0093	CMC4->C-x(9)-C_motif_containing_4,chrX:154289897-154299637:-,USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32	SKMEL24_SKIN	0.04	0.04	0.0186	TRUE	0	0	0	1	0	FALSE	ACH-000822
SKMEL24_SKIN	COL8A1--CMSS1	1	1	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	814	172	0	0.01	0.0093	0.0093	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SKMEL24_SKIN	0	0.01	0.0186	FALSE	38	10	2	29	0	FALSE	ACH-000822
SKMEL24_SKIN	COL8A1--CMSS1	1	1	COL8A1	12080	chr3:99463865:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	NO	1007	172	0	0.01	0.0093	0.0093	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SKMEL24_SKIN	0	0.01	0.0186	FALSE	4	4	0	17	0	FALSE	ACH-000822
SKMEL24_SKIN	CPQ--SDC2	1	1	CPQ	1176	chr8:97657630:+	SDC2	25442	chr8:97549528:+	ONLY_REF_SPLICE	YES	67	718	0.03	0	0.0093	0.0093	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	SKMEL24_SKIN	0	0.03	0.0186	FALSE	0	4	0	2	0	FALSE	ACH-000822
SKMEL24_SKIN	DCBLD2--NIT2	1	1	DCBLD2	19623	chr3:98526925:-	NIT2	38088	chr3:100071248:+	ONLY_REF_SPLICE	YES	648	135	0	0.01	0.0093	0.0093	GTEx&tcga_normals:4/3694=0.11%,GTEx_FI:{Nerve=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Nerve_-_Tibial=2,Artery_-_Tibial=1,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,NIT2->chr3:100053545-100075710:+,nitrilase_family_member_2	SKMEL24_SKIN	0	0.01	0.0186	FALSE	4	4	0	1	0	FALSE	ACH-000822
SKMEL24_SKIN	GMDS-AS1--GMDS	1	1	GMDS-AS1	2273	chr6:2249160:+	GMDS	43013	chr6:1742820:-	ONLY_REF_SPLICE	YES	10	63	0.17	0.03	0.0093	0.0093	GTEx_FI:{Salivary_Gland=[count:2=pct:5.1],Thyroid=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},LOCAL_INVERSION:+:-:[56],GMDS-AS1->GMDS_antisense_RNA_1_(head_to_head),chr6:2245982-2482256:+,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	SKMEL24_SKIN	0.03	0.17	0.0186	TRUE	1	4	0	3	0	FALSE	ACH-000822
SKMEL24_SKIN	HLA-DRB5--HLA-DRA	1	1	HLA-DRB5	1163	chr6:32497902:-	HLA-DRA	9934	chr6:32410225:+	ONLY_REF_SPLICE	YES	30	4714	0.06	0	0.0093	0.0093	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Adipose_-_Visceral_(Omentum)=1},HGNC_GENEFAM,LOCAL_INVERSION:-:+:[72297],HLA-DRB5->chr6:32485120-32498064:-,major_histocompatibility_complex,_class_II,_DR_beta_5,HLA-DRA->chr6:32407619-32412823:+,major_histocompatibility_complex,_class_II,_DR_alpha	SKMEL24_SKIN	0	0.06	0.0186	FALSE	1	0	0	1	0	FALSE	ACH-000822
SKMEL24_SKIN	LYRM4--FARS2	1	1	LYRM4	4789	chr6:5216851:-	FARS2	27758	chr6:5404775:+	ONLY_REF_SPLICE	YES	104	15	0.02	0.12	0.0093	0.0093	GTEx_v2:{count=2;pct=0.02%;dist=Ovary=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[105],LYRM4->LYR_motif_containing_4,chr6:5102827-5261172:-,FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial	SKMEL24_SKIN	0.02	0.12	0.0186	TRUE	0	1	0	2	0	FALSE	ACH-000822
SKMEL24_SKIN	MATR3--CTNNA1	1	1	MATR3	9772	chr5:138629494:+	CTNNA1	45982	chr5:138145727:+	ONLY_REF_SPLICE	YES	58	1179	0.03	0	0.0093	0.0093	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	SKMEL24_SKIN	0	0.03	0.0186	FALSE	3	14	0	14	0	FALSE	ACH-000822
SKMEL24_SKIN	POLR2F--CSNK1E	1	1	POLR2F	12042	chr22:38382319:+	CSNK1E	29171	chr22:38710174:-	ONLY_REF_SPLICE	YES	42	33	0.05	0.06	0.0093	0.0093	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},POLR2F->chr22:38348614-38437922:+,polymerase_(RNA)_II_subunit_F,CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-	SKMEL24_SKIN	0.05	0.06	0.0186	TRUE	0	0	0	2	0	FALSE	ACH-000822
SKMEL24_SKIN	RB1--ITM2B	1	1	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	44	945	0.04	0	0.0093	0.0093	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	SKMEL24_SKIN	0	0.04	0.0186	FALSE	53	73	8	19	0	FALSE	ACH-000822
SKMEL24_SKIN	RP11-141M1.3--MYO1D	1	1	RP11-141M1.3	5599	chr13:34098375:-	MYO1D	50383	chr17:30821933:-	ONLY_REF_SPLICE	NO	31	8	0.06	0.2	0.0093	0.0093	RP11-141M1.3->chr13:33929343-34250905:-,MYO1D->chr17:30819540-31204195:-,myosin_ID	SKMEL24_SKIN	0.06	0.2	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000822
SNU61_LARGE_INTESTINE	TIMM23B--LINC00843	161	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.5519	0.2603	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU61_LARGE_INTESTINE	0.99	1	1.8122	TRUE	508	994	45	981	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	ANP32B--NCL	104	2	ANP32B	9252	chr9:100774754:+	NCL	18675	chr2:232326421:-	INCL_NON_REF_SPLICE	YES	726	1775	0.13	0.06	1.0025	0.0193	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SNU61_LARGE_INTESTINE	0.06	0.13	1.0218	TRUE	0	0	0	7	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-TA--MT-TC	93	17	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8964	0.1639	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU61_LARGE_INTESTINE	1	1	1.0603	FALSE	462	80	0	856	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	TIMM23--RP11-464F9.1	90	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	315	3	0.23	0.97	0.8675	0.0193	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU61_LARGE_INTESTINE	0.23	0.97	0.8868	TRUE	519	3926	326	965	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	NAPEPLD--POU2F3	72	34	NAPEPLD	3910	chr7:102768930:-	POU2F3	20661	chr11:120168974:+	ONLY_REF_SPLICE	YES	26	0	0.8	1	0.694	0.3277	NAPEPLD->N-acyl_phosphatidylethanolamine_phospholipase_D,chr7:102740223-102790007:-,POU2F3->POU_class_2_homeobox_3,chr11:120107349-120190653:+	SNU61_LARGE_INTESTINE	0.8	1	1.0217	TRUE	0	0	0	1	0	TRUE	ACH-000532
SNU61_LARGE_INTESTINE	ANP32B--NCL	65	0	ANP32B	8161	chr9:100773632:+	NCL	19608	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6265	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SNU61_LARGE_INTESTINE	1	1	0.6265	TRUE	0	0	0	7	0	TRUE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	44	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4241	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	1	1	0.4241	FALSE	230	193	14	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND5--MT-ATP8	33	5	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3082	10	0.01	0.79	0.3181	0.0482	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0.01	0.79	0.3663	FALSE	43	37	8	105	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	32	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3085	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	1	1	0.3085	FALSE	230	198	14	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	OR51S1--TP53I11	32	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3085	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU61_LARGE_INTESTINE	1	1	0.3085	TRUE	402	216	10	229	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-CO3--MT-ATP6	11	70	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	6	13	0.93	0.86	0.106	0.6747	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU61_LARGE_INTESTINE	0.86	0.93	0.7807	FALSE	189	492	56	216	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	ITGB1BP1--SPDYA	25	8	ITGB1BP1	4481	chr2:9558755:-	SPDYA	25647	chr2:29041914:+	ONLY_REF_SPLICE	YES	142	0	0.19	1	0.241	0.0771	ITGB1BP1->chr2:9543604-9563676:-,integrin_subunit_beta_1_binding_protein_1,SPDYA->chr2:29005383-29073477:+,speedy/RINGO_cell_cycle_regulator_family_member_A	SNU61_LARGE_INTESTINE	0.19	1	0.3181	TRUE	0	0	0	1	0	TRUE	ACH-000532
SNU61_LARGE_INTESTINE	MT-CO3--MT-ATP6	10	67	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	NO	2	19	0.97	0.8	0.0964	0.6458	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU61_LARGE_INTESTINE	0.8	0.97	0.7422	FALSE	189	492	56	216	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	86	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	YES	13	0	0.87	1	0.0386	0.829	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU61_LARGE_INTESTINE	0.87	1	0.8676	FALSE	189	492	56	216	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	86	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	13	0	0.87	1	0.0386	0.829	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU61_LARGE_INTESTINE	0.87	1	0.8676	FALSE	189	492	56	216	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-CO1	22	12	MT-ND4	1903	chrM:11662:+	MT-CO1	6015	chrM:6540:+	INCL_NON_REF_SPLICE	NO	19344	26809	0	0	0.2121	0.1157	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.3278	FALSE	19	92	11	16	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	87	MT-CO3	1642	chrM:9848:+	MT-ATP6	4943	chrM:8685:+	INCL_NON_REF_SPLICE	YES	1	45	0.99	0.67	0.0289	0.8386	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU61_LARGE_INTESTINE	0.67	0.99	0.8675	FALSE	189	492	56	216	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	83	MT-CO3	1642	chrM:9848:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	1	52	0.99	0.62	0.0289	0.8001	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU61_LARGE_INTESTINE	0.62	0.99	0.829	FALSE	189	492	56	216	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	71	MT-CO3	1220	chrM:9426:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	13	12	0.85	0.86	0.0482	0.6844	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU61_LARGE_INTESTINE	0.85	0.86	0.7326	FALSE	189	492	56	216	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND6--MT-TE	22	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2121	0.0096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU61_LARGE_INTESTINE	1	1	0.2217	FALSE	499	1288	110	792	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND3--MT-ATP8	22	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2121	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	1	1	0.2121	FALSE	351	233	23	137	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	72	MT-CO3	1637	chrM:9843:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	10	0.99	0.88	0.0289	0.694	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU61_LARGE_INTESTINE	0.88	0.99	0.7229	FALSE	189	492	56	216	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	19	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20779	2	0	0.92	0.1831	0.0482	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.92	0.2313	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	67	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	4	10	0.95	0.88	0.0289	0.6458	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU61_LARGE_INTESTINE	0.88	0.95	0.6747	FALSE	189	492	56	216	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-CO1	16	15	MT-ND4	1773	chrM:11532:+	MT-CO1	5916	chrM:6441:+	INCL_NON_REF_SPLICE	YES	19238	25416	0	0	0.1542	0.1446	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.2988	FALSE	19	92	11	16	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	16	8	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19238	11	0	0.69	0.1542	0.0771	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.69	0.2313	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	13	17	MT-ND4	2053	chrM:11812:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16969	41	0	0.42	0.1253	0.1639	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.42	0.2892	FALSE	231	215	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MTATP6P1--MT-ND1	17	0	MTATP6P1	1174	chr1:569249:+	MT-ND1	4767	chrM:3392:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1639	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU61_LARGE_INTESTINE	1	1	0.1639	FALSE	16	0	0	13	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	NPM1P24--SET	16	2	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	42	1604	0.3	0.01	0.1542	0.0193	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU61_LARGE_INTESTINE	0.01	0.3	0.1735	TRUE	0	0	0	434	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	16	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18399	11	0	0.61	0.1542	0.0096	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.61	0.1638	FALSE	231	205	14	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	C15orf57--CBX3	14	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	89	61	0.2	0.27	0.1349	0.0771	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU61_LARGE_INTESTINE	0.2	0.27	0.212	TRUE	267	562	48	632	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	13	12	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	19304	0	0	1	0.1253	0.1157	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	1	0.241	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND5--MT-ATP8	14	4	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4825	40	0	0.31	0.1349	0.0386	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.31	0.1735	FALSE	43	37	8	105	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MTATP6P1--MT-ND1	15	0	MTATP6P1	1126	chr1:569201:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1446	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU61_LARGE_INTESTINE	1	1	0.1446	FALSE	16	0	0	13	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND5--MT-ATP8	12	10	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4	493	0.85	0.04	0.1157	0.0964	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0.04	0.85	0.2121	FALSE	43	37	8	105	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	ANP32B--NCL	14	0	ANP32B	8117	chr9:100773588:+	NCL	19615	chr2:232325481:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1349	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SNU61_LARGE_INTESTINE	1	1	0.1349	TRUE	0	0	0	7	0	TRUE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	10	15	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	19141	1	0	0.96	0.0964	0.1446	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.96	0.241	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-CO3--MT-ATP6	13	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	7	1	0.68	0.94	0.1253	0.0193	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU61_LARGE_INTESTINE	0.68	0.94	0.1446	FALSE	189	492	56	216	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	17	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18003	41	0	0.39	0.0868	0.1639	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.39	0.2507	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	29	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	61	1	0.36	0.97	0.0578	0.2795	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0.36	0.97	0.3373	FALSE	213	207	15	279	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	HSP90AB1--MT-RNR2	13	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1253	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU61_LARGE_INTESTINE	1	1	0.1253	FALSE	13	9	0	364	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND6--MT-TE	11	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.106	0.0578	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU61_LARGE_INTESTINE	1	1	0.1638	FALSE	499	1288	110	792	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	RP11-680G10.1--GSE1	12	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	46	1	0.22	0.1157	0.0096	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU61_LARGE_INTESTINE	0.22	1	0.1253	TRUE	465	1949	224	605	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	12	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18833	41	0	0.34	0.0868	0.1157	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.34	0.2025	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	11	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	11859	27557	0	0	0.106	0.0289	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.1349	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	22	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	18550	1	0	0.97	0.0578	0.2121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.97	0.2699	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	10	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18984	2	0	0.9	0.0868	0.0964	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.9	0.1832	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	C15orf57--CBX3	10	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	80	63	0.16	0.19	0.0964	0.0482	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU61_LARGE_INTESTINE	0.16	0.19	0.1446	TRUE	267	562	48	632	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	29	MT-ND4	2343	chrM:12102:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.0386	0.2795	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0.97	1	0.3181	FALSE	209	205	15	279	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	RP11-123O10.4--GRIP1	11	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.106	0.0096	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU61_LARGE_INTESTINE	1	1	0.1156	FALSE	416	2512	207	587	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-CO3--MT-ATP6	11	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.106	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU61_LARGE_INTESTINE	1	1	0.106	FALSE	189	492	56	216	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	20	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3120	41	0.01	0.39	0.0578	0.1928	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0.01	0.39	0.2506	FALSE	216	209	16	281	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MTATP6P1--MT-ND1	11	0	MTATP6P1	1111	chr1:569186:+	MT-ND1	4880	chrM:3505:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.106	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU61_LARGE_INTESTINE	1	1	0.106	FALSE	16	0	0	13	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	29	MT-ND4	2301	chrM:12060:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	5	2	0.86	0.94	0.0289	0.2795	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0.86	0.94	0.3084	FALSE	209	205	15	279	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	5	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	22711	725	0	0.02	0.0868	0.0482	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.02	0.135	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	HSP90AB1--MT-RNR2	10	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0964	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU61_LARGE_INTESTINE	1	1	0.0964	FALSE	13	9	0	364	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	10	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0964	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	1	1	0.0964	FALSE	230	198	14	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	16	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	18003	156	0	0.12	0.0578	0.1542	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.12	0.212	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-CO1	3	28	MT-ND4	2275	chrM:12034:+	MT-CO1	5889	chrM:6414:+	INCL_NON_REF_SPLICE	YES	213	25021	0.13	0	0.0289	0.2699	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0.13	0.2988	FALSE	19	91	11	16	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	9	3	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11669	27402	0	0	0.0868	0.0289	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.1157	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND5--MT-ATP8	6	15	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.88	0.0578	0.1446	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0.88	1	0.2024	FALSE	43	37	8	105	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	21	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	6	1	0.81	0.96	0.0386	0.2024	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU61_LARGE_INTESTINE	0.81	0.96	0.241	FALSE	189	492	56	216	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	21	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	19346	0	0	1	0.0386	0.2024	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	1	0.241	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	20	MT-ND4	1903	chrM:11662:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	19348	1	0	0.96	0.0386	0.1928	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.96	0.2314	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	20	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	19628	2	0	0.92	0.0386	0.1928	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.92	0.2314	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-TA--MT-TC	3	24	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0.2313	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU61_LARGE_INTESTINE	1	1	0.2602	FALSE	462	80	0	856	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	8	3	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11930	27402	0	0	0.0771	0.0289	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.106	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	8	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0771	0.0289	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU61_LARGE_INTESTINE	0.92	1	0.106	FALSE	515	4851	409	746	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	22	MT-ND4	2170	chrM:11929:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	9789	2	0	0.93	0.0289	0.2121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.93	0.241	FALSE	231	215	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	22	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	18449	2	0	0.93	0.0289	0.2121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.93	0.241	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	10	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	19334	1543	0	0.01	0.0578	0.0964	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.01	0.1542	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND6--MT-TE	7	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0.0578	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU61_LARGE_INTESTINE	1	1	0.1253	FALSE	499	1288	110	792	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	21	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19485	2	0	0.92	0.0289	0.2024	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.92	0.2313	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	21	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	19418	0	0	1	0.0289	0.2024	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	1	0.2313	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	7	4	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	11341	25332	0	0	0.0675	0.0386	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.1061	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	16	MT-ND4	1917	chrM:11676:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	19614	11	0	0.65	0.0386	0.1542	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.65	0.1928	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	16	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	19219	0	0	1	0.0386	0.1542	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	1	0.1928	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MTATP6P1--MT-ND1	8	0	MTATP6P1	1098	chr1:569173:+	MT-ND1	4697	chrM:3322:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0771	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU61_LARGE_INTESTINE	1	1	0.0771	FALSE	16	0	0	13	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	6	7	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3254	27900	0	0	0.0578	0.0675	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.1253	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	7	3	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	11893	26887	0	0	0.0675	0.0289	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.0964	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	14	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	19359	779	0	0.02	0.0386	0.1349	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.02	0.1735	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	14	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	19284	418	0	0.04	0.0386	0.1349	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.04	0.1735	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	10	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	18971	0	0	1	0.0482	0.0964	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	1	0.1446	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	17	MT-CO3	1149	chrM:9355:+	MT-ATP6	5426	chrM:9168:+	INCL_NON_REF_SPLICE	YES	7	1	0.74	0.95	0.0289	0.1639	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU61_LARGE_INTESTINE	0.74	0.95	0.1928	FALSE	189	492	56	216	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	1	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	9311	1	0	0.89	0.0675	0.0096	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.89	0.0771	FALSE	230	193	14	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	17	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6021	41	0	0.33	0.0289	0.1639	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.33	0.1928	FALSE	218	210	16	281	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	RP11-680G10.1--GSE1	7	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	26	1	0.24	0.0675	0.0096	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU61_LARGE_INTESTINE	0.24	1	0.0771	TRUE	458	1351	185	561	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	12	MT-ND4	1779	chrM:11538:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	19172	0	0	1	0.0386	0.1157	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	1	0.1543	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	1	1	0.0675	FALSE	230	193	14	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	12	MT-ND4	1774	chrM:11533:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	NO	19237	0	0	1	0.0386	0.1157	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	1	0.1543	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU61_LARGE_INTESTINE	1	1	0.0675	FALSE	462	80	0	856	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-TA--MT-TC	3	16	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0.1542	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU61_LARGE_INTESTINE	1	1	0.1831	FALSE	462	80	0	856	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0675	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU61_LARGE_INTESTINE	1	1	0.0675	FALSE	292	1546	117	613	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	SAMD5--SASH1	7	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0675	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SNU61_LARGE_INTESTINE	1	1	0.0675	TRUE	53	396	64	110	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	11	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	NO	1852	24927	0.01	0	0.0386	0.106	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0.01	0.1446	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	15	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	19243	5	0	0.78	0.0289	0.1446	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.78	0.1735	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND5--MT-ATP8	4	11	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11	40	0.58	0.27	0.0386	0.106	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0.27	0.58	0.1446	FALSE	43	37	8	105	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	ANP32B--NCL	6	2	ANP32B	9251	chr9:100774753:+	NCL	18680	chr2:232326416:-	INCL_NON_REF_SPLICE	YES	722	1831	0.01	0	0.0578	0.0193	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SNU61_LARGE_INTESTINE	0	0.01	0.0771	FALSE	0	0	0	7	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	2	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	22334	482	0	0.02	0.0578	0.0193	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.02	0.0771	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	14	MT-ND4	1925	chrM:11684:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	YES	19166	228	0	0.07	0.0289	0.1349	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.07	0.1638	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-CO1	6	2	MT-ND4	1234	chrM:10993:+	MT-CO1	6016	chrM:6541:+	INCL_NON_REF_SPLICE	YES	16180	26937	0	0	0.0578	0.0193	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.0771	FALSE	19	89	11	16	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	9	MT-ND4	1779	chrM:11538:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19172	41	0	0.24	0.0386	0.0868	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.24	0.1254	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND5--MT-ATP8	4	9	MT-ND5	2518	chrM:13854:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2507	2	0.01	0.87	0.0386	0.0868	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0.01	0.87	0.1254	FALSE	43	37	8	105	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND6--MT-TE	4	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0.0868	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU61_LARGE_INTESTINE	1	1	0.1254	FALSE	499	1288	110	792	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	5	4	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	12764	25414	0	0	0.0482	0.0386	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.0868	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-CO1	3	12	MT-ND4	1863	chrM:11622:+	MT-CO1	6015	chrM:6540:+	INCL_NON_REF_SPLICE	NO	19418	26809	0	0	0.0289	0.1157	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.1446	FALSE	19	92	11	16	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-TA--MT-TC	4	8	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0.0771	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU61_LARGE_INTESTINE	1	1	0.1157	FALSE	462	80	0	856	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	7	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	19266	908	0	0.01	0.0386	0.0675	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.01	0.1061	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	11	MT-ND5	2712	chrM:14048:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18	40	0.44	0.26	0.0289	0.106	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0.26	0.44	0.1349	FALSE	43	37	8	105	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	10	MT-ND4	1770	chrM:11529:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	19269	7	0	0.65	0.0289	0.0964	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.65	0.1253	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	10	MT-ND5	2807	chrM:14143:+	MT-ATP8	5935	chrM:8488:+	INCL_NON_REF_SPLICE	YES	0	918	1	0.01	0.0289	0.0964	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0.01	1	0.1253	FALSE	43	37	8	105	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	NPM1P24--SET	5	2	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	42	1425	0.14	0	0.0482	0.0193	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU61_LARGE_INTESTINE	0	0.14	0.0675	FALSE	0	0	0	434	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	NPM1P24--SET	5	2	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	42	1422	0.14	0	0.0482	0.0193	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU61_LARGE_INTESTINE	0	0.14	0.0675	FALSE	0	0	0	434	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	5	1	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	14360	18141	0	0	0.0482	0.0096	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.0578	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	5	MT-ATP6	1400	chrM:8926:+	MT-CO1	5375	chrM:6597:+	INCL_NON_REF_SPLICE	YES	12642	27499	0	0	0.0386	0.0482	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.0868	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	9	MT-ND4	1779	chrM:11538:+	MT-ATP8	5480	chrM:8467:+	INCL_NON_REF_SPLICE	YES	19172	11	0	0.52	0.0289	0.0868	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.52	0.1157	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	18833	1838	0	0	0.0386	0.0482	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0	0.0868	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	1	MT-ND4	1109	chrM:10868:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	9660	2	0	0.75	0.0482	0.0096	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.75	0.0578	FALSE	230	193	14	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND5--MT-ATP8	4	5	MT-ND5	2514	chrM:13850:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2513	40	0	0.18	0.0386	0.0482	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.18	0.0868	FALSE	43	37	8	105	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND6--MT-TE	5	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0482	0.0096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU61_LARGE_INTESTINE	1	1	0.0578	FALSE	499	1288	110	792	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	SLC1A5--MT-ND4L	5	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	361	0	0.02	1	0.0482	0.0096	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU61_LARGE_INTESTINE	0.02	1	0.0578	FALSE	0	0	0	189	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MTATP6P1--MT-ND1	5	0	MTATP6P1	1116	chr1:569191:+	MT-ND1	4693	chrM:3318:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0482	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU61_LARGE_INTESTINE	1	1	0.0482	FALSE	16	0	0	13	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	NRIP1--AF127936.7	5	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0482	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU61_LARGE_INTESTINE	1	1	0.0482	FALSE	125	705	46	456	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	4	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0386	0.0386	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU61_LARGE_INTESTINE	0.89	1	0.0772	FALSE	407	2205	196	549	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	3	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	11930	24461	0	0	0.0386	0.0289	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.0675	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	7	MT-ATP6	1537	chrM:9063:+	MT-CO1	5319	chrM:6541:+	INCL_NON_REF_SPLICE	YES	4523	26945	0	0	0.0289	0.0675	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.0964	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	3	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21594	41	0	0.15	0.0386	0.0289	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.15	0.0675	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	6	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	19245	1838	0	0	0.0289	0.0578	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0	0.0867	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	2	MT-ND4	1285	chrM:11044:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18621	11	0	0.35	0.0386	0.0193	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.35	0.0579	FALSE	231	205	14	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	NPM1P24--SET	4	2	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	42	1570	0.12	0	0.0386	0.0193	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU61_LARGE_INTESTINE	0	0.12	0.0579	FALSE	0	0	0	434	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	SLC1A5--MT-ND4L	4	2	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	349	0	0.02	1	0.0386	0.0193	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU61_LARGE_INTESTINE	0.02	1	0.0579	FALSE	0	0	0	189	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	5	MT-ATP6	1400	chrM:8926:+	MT-CO1	5381	chrM:6603:+	INCL_NON_REF_SPLICE	YES	12642	27113	0	0	0.0289	0.0482	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.0771	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	1	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	YES	16369	0	0	1	0.0386	0.0096	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	1	0.0482	FALSE	231	204	14	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	5	MT-ND4	1645	chrM:11404:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21595	41	0	0.16	0.0289	0.0482	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.16	0.0771	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	5	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	23080	156	0	0.05	0.0289	0.0482	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.05	0.0771	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	5	MT-ND4	1452	chrM:11211:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	21492	0	0	1	0.0289	0.0482	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	1	0.0771	FALSE	231	217	16	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-CO1	3	5	MT-ND4	1209	chrM:10968:+	MT-CO1	5684	chrM:6209:+	INCL_NON_REF_SPLICE	NO	16063	23065	0	0	0.0289	0.0482	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.0771	FALSE	19	89	11	16	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND5--MT-ATP8	4	1	MT-ND5	1648	chrM:12984:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3719	40	0	0.11	0.0386	0.0096	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.11	0.0482	FALSE	42	36	7	104	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	NPM1P24--SET	4	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	42	1298	0.11	0	0.0386	0.0096	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU61_LARGE_INTESTINE	0	0.11	0.0482	FALSE	0	0	0	434	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	JSRP1--RPS28	4	0	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SNU61_LARGE_INTESTINE	1	1	0.0386	TRUE	0	1	0	84	1	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	4	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	13358	25206	0	0	0.0289	0.0386	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.0675	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	4	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	YES	11720	24916	0	0	0.0289	0.0386	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.0675	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1598	chrM:9124:+	MT-CO1	5978	chrM:7200:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	1	1	0.0386	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	4	MT-ATP6	1144	chrM:8670:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	12515	24927	0	0	0.0289	0.0386	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.0675	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	1	1	0.0386	FALSE	230	193	14	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	1	1	0.0386	FALSE	230	198	14	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	1	1	0.0386	FALSE	231	205	14	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-CO1	3	4	MT-ND4	1241	chrM:11000:+	MT-CO1	5918	chrM:6443:+	INCL_NON_REF_SPLICE	YES	16279	25306	0	0	0.0289	0.0386	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.0675	FALSE	19	89	11	16	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MTATP6P1--MT-ND1	4	0	MTATP6P1	1106	chr1:569181:+	MT-ND1	5099	chrM:3724:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU61_LARGE_INTESTINE	1	1	0.0386	FALSE	16	0	0	13	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13495	27402	0	0	0.0289	0.0289	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.0578	FALSE	183	104	9	328	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	3	MT-ND5	1635	chrM:12971:+	MT-ATP8	5887	chrM:8440:+	INCL_NON_REF_SPLICE	YES	3786	2	0	0.75	0.0289	0.0289	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.75	0.0578	FALSE	42	36	7	104	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MTATP6P1--MT-ND1	3	3	MTATP6P1	1303	chr1:569378:+	MT-ND1	4682	chrM:3307:+	INCL_NON_REF_SPLICE	YES	3201	0	0	1	0.0289	0.0289	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU61_LARGE_INTESTINE	0	1	0.0578	FALSE	16	0	0	13	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	APP--MT-ND2	3	2	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	628	8898	0.01	0	0.0289	0.0193	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU61_LARGE_INTESTINE	0	0.01	0.0482	FALSE	0	1	0	51	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	2	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	6	1	0.45	0.83	0.0289	0.0193	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU61_LARGE_INTESTINE	0.45	0.83	0.0482	FALSE	189	492	56	216	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	2	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	11	1	0.31	0.83	0.0289	0.0193	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU61_LARGE_INTESTINE	0.31	0.83	0.0482	FALSE	189	492	56	216	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	2	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	21018	1543	0	0	0.0289	0.0193	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0	0.0482	FALSE	231	205	14	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-CO1	3	2	MT-ND4	1203	chrM:10962:+	MT-CO1	6073	chrM:6598:+	INCL_NON_REF_SPLICE	NO	15895	27323	0	0	0.0289	0.0193	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.0482	FALSE	19	89	11	16	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	NPM1P24--SET	3	2	NPM1P24	1536	chr10:74677757:-	SET	12305	chr9:131456200:+	INCL_NON_REF_SPLICE	NO	42	1439	0.11	0	0.0289	0.0193	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU61_LARGE_INTESTINE	0	0.11	0.0482	FALSE	0	0	0	434	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	NPM1P24--SET	3	2	NPM1P24	1533	chr10:74677760:-	SET	12307	chr9:131456202:+	INCL_NON_REF_SPLICE	NO	42	1440	0.11	0	0.0289	0.0193	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU61_LARGE_INTESTINE	0	0.11	0.0482	FALSE	0	0	0	434	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	TMEM54--MT-CO2	3	2	TMEM54	2326	chr1:33363811:-	MT-CO2	8517	chrM:7597:+	INCL_NON_REF_SPLICE	YES	499	0	0.01	1	0.0289	0.0193	TMEM54->chr1:33360195-33367039:-,transmembrane_protein_54,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU61_LARGE_INTESTINE	0.01	1	0.0482	FALSE	0	0	0	10	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	EEF2--MT-CO1	3	1	EEF2	9646	chr19:3976666:-	MT-CO1	13934	chrM:6579:+	INCL_NON_REF_SPLICE	YES	1823	28010	0	0	0.0289	0.0096	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	0	0	0.0385	FALSE	0	0	0	2	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	1	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	10	1	0.29	0.8	0.0289	0.0096	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU61_LARGE_INTESTINE	0.29	0.8	0.0385	FALSE	189	492	56	216	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1112	chrM:10871:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	9815	2	0	0.67	0.0289	0.0096	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.67	0.0385	FALSE	230	193	14	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	NO	16112	2	0	0.67	0.0289	0.0096	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	0	0.67	0.0385	FALSE	230	193	14	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MTATP6P1--MT-ND1	3	1	MTATP6P1	1555	chr1:569630:+	MT-ND1	5165	chrM:3790:+	INCL_NON_REF_SPLICE	YES	263	10413	0.01	0	0.0289	0.0096	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU61_LARGE_INTESTINE	0	0.01	0.0385	FALSE	16	0	0	13	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	ANP32B--NCL	3	0	ANP32B	8152	chr9:100773623:+	NCL	19608	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SNU61_LARGE_INTESTINE	1	1	0.0289	TRUE	0	0	0	7	0	TRUE	ACH-000532
SNU61_LARGE_INTESTINE	FTH1--ACTB	3	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU61_LARGE_INTESTINE	1	1	0.0289	TRUE	1	0	0	97	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU61_LARGE_INTESTINE	1	1	0.0289	FALSE	189	492	56	216	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU61_LARGE_INTESTINE	1	1	0.0289	FALSE	231	204	14	283	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MT-ND4--MT-CO1	3	0	MT-ND4	1359	chrM:11118:+	MT-CO1	6650	chrM:7175:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU61_LARGE_INTESTINE	1	1	0.0289	FALSE	19	92	11	16	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MTATP6P1--MT-ND1	3	0	MTATP6P1	1180	chr1:569255:+	MT-ND1	5179	chrM:3804:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU61_LARGE_INTESTINE	1	1	0.0289	FALSE	16	0	0	13	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MTATP6P1--MT-ND1	3	0	MTATP6P1	1098	chr1:569173:+	MT-ND1	5173	chrM:3798:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU61_LARGE_INTESTINE	1	1	0.0289	FALSE	16	0	0	13	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	MTATP6P1--MT-ND1	3	0	MTATP6P1	1123	chr1:569198:+	MT-ND1	4721	chrM:3346:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU61_LARGE_INTESTINE	1	1	0.0289	FALSE	16	0	0	13	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.22	1	0.0193	0.0193	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU61_LARGE_INTESTINE	0.22	1	0.0386	FALSE	164	806	69	479	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	ADAP1--SUN1	2	0	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SNU61_LARGE_INTESTINE	1	1	0.0193	TRUE	16	22	0	27	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	DCUN1D1--MKI67	2	0	DCUN1D1	4385	chr3:182683467:-	MKI67	22422	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	DCUN1D1->chr3:182655862-182703741:-,defective_in_cullin_neddylation_1_domain_containing_1,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	SNU61_LARGE_INTESTINE	1	1	0.0193	TRUE	0	0	0	2	0	TRUE	ACH-000532
SNU61_LARGE_INTESTINE	MTHFD2--RP11-1094M14.11	2	0	MTHFD2	5101	chr2:74435848:+	RP11-1094M14.11	16749	chr17:33900896:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	MTHFD2->chr2:74425689-74444692:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_2,_methenyltetrahydrofolate_cyclohydrolase,RP11-1094M14.11->chr17:33895139-33901811:+	SNU61_LARGE_INTESTINE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000532
SNU61_LARGE_INTESTINE	RP4-633O19__A.1--MYH9	2	0	RP4-633O19__A.1	1110	chr22:36784780:+	MYH9	9409	chr22:36737571:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	LOCAL_INVERSION:+:-:[608],RP4-633O19__A.1->chr22:36784671-36792562:+,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	SNU61_LARGE_INTESTINE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000532
SNU61_LARGE_INTESTINE	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	22535	chr6:148835460:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SNU61_LARGE_INTESTINE	1	1	0.0193	TRUE	0	0	0	2	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	ITGB1BP1--SPDYA	1	3	ITGB1BP1	4481	chr2:9558755:-	SPDYA	28967	chr2:29063038:+	ONLY_REF_SPLICE	YES	142	7	0.03	0.36	0.0096	0.0289	ITGB1BP1->chr2:9543604-9563676:-,integrin_subunit_beta_1_binding_protein_1,SPDYA->chr2:29005383-29073477:+,speedy/RINGO_cell_cycle_regulator_family_member_A	SNU61_LARGE_INTESTINE	0.03	0.36	0.0385	TRUE	0	0	0	1	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0096	0.0289	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU61_LARGE_INTESTINE	1	1	0.0385	FALSE	467	2173	244	435	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	ADAM17--YWHAQ	1	1	ADAM17	7000	chr2:9666240:-	YWHAQ	29763	chr2:9731644:-	ONLY_REF_SPLICE	YES	41	866	0.05	0	0.0096	0.0096	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[28180],ADAM17->ADAM_metallopeptidase_domain_17,chr2:9628615-9695921:-,YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta	SNU61_LARGE_INTESTINE	0	0.05	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	75	38	0.03	0.05	0.0096	0.0096	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	SNU61_LARGE_INTESTINE	0.03	0.05	0.0192	FALSE	118	557	29	88	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	CUX1--ACN9	1	1	CUX1	6304	chr7:101559505:+	ACN9	62751	chr7:96810324:+	ONLY_REF_SPLICE	YES	98	124	0.02	0.02	0.0096	0.0096	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,ACN9->chr7:96745902-96811075:+	SNU61_LARGE_INTESTINE	0.02	0.02	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	ELP4--IMMP1L	1	1	ELP4	3416	chr11:31561330:+	IMMP1L	30795	chr11:31455117:-	ONLY_REF_SPLICE	NO	44	26	0.04	0.07	0.0096	0.0096	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:+:-:[105],ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	SNU61_LARGE_INTESTINE	0.04	0.07	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	ITGB1BP1--SPDYA	1	1	ITGB1BP1	1175	chr2:9563502:-	SPDYA	28967	chr2:29063038:+	ONLY_REF_SPLICE	YES	120	7	0.02	0.22	0.0096	0.0096	ITGB1BP1->chr2:9543604-9563676:-,integrin_subunit_beta_1_binding_protein_1,SPDYA->chr2:29005383-29073477:+,speedy/RINGO_cell_cycle_regulator_family_member_A	SNU61_LARGE_INTESTINE	0.02	0.22	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	R3HDM1--UBXN4	1	1	R3HDM1	1179	chr2:136289203:+	UBXN4	40026	chr2:136505837:+	ONLY_REF_SPLICE	YES	42	188	0.05	0.01	0.0096	0.0096	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[16349],R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+,UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+	SNU61_LARGE_INTESTINE	0.01	0.05	0.0192	FALSE	0	0	0	4	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	RHOA--QRICH1	1	1	RHOA	2179	chr3:49449253:-	QRICH1	17997	chr3:49114471:-	ONLY_REF_SPLICE	YES	1373	66	0	0.03	0.0096	0.0096	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,QRICH1->chr3:49067140-49131796:-,glutamine_rich_1	SNU61_LARGE_INTESTINE	0	0.03	0.0192	FALSE	0	2	0	4	0	FALSE	ACH-000532
SNU61_LARGE_INTESTINE	RP11-20I20.2--CTBP1	1	1	RP11-20I20.2	1114	chr4:1107540:+	CTBP1	8481	chr4:1235307:-	ONLY_REF_SPLICE	NO	0	24	1	0.08	0.0096	0.0096	LOCAL_INVERSION:+:-:[78471],RP11-20I20.2->chr4:1107427-1126765:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SNU61_LARGE_INTESTINE	0.08	1	0.0192	TRUE	0	1	1	6	1	TRUE	ACH-000532
SNU61_LARGE_INTESTINE	SUN1--ADAP1	1	1	SUN1	23266	chr7:905704:+	ADAP1	49955	chr7:944809:-	ONLY_REF_SPLICE	YES	250	218	0.01	0.01	0.0096	0.0096	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Aorta=1,Prostate=1,Uterus=1},LOCAL_INVERSION:+:-:[1468],SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+,ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-	SNU61_LARGE_INTESTINE	0.01	0.01	0.0192	FALSE	3	2	0	4	0	FALSE	ACH-000532
JHOS2_OVARY	FAM102A--CIZ1	89	30	FAM102A	1522	chr9:130742271:-	CIZ1	19522	chr9:130953141:-	ONLY_REF_SPLICE	YES	47	16	0.72	0.88	0.9629	0.3246	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-	JHOS2_OVARY	0.72	0.88	1.2875	TRUE	0	1	0	1	1	TRUE	ACH-000132
JHOS2_OVARY	MT-TA--MT-TC	64	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6924	0.0433	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOS2_OVARY	1	1	0.7357	FALSE	462	80	0	856	0	FALSE	ACH-000132
JHOS2_OVARY	MT-TC--MT-TY	65	0	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7032	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	JHOS2_OVARY	1	1	0.7032	FALSE	51	280	19	36	0	FALSE	ACH-000132
JHOS2_OVARY	SLC35E2B--KIAA2013	49	34	SLC35E2B	1280	chr1:1623888:-	KIAA2013	19939	chr1:11983546:-	ONLY_REF_SPLICE	YES	23	141	0.78	0.37	0.5301	0.3678	SLC35E2B->chr1:1592939-1624167:-,solute_carrier_family_35_member_E2B,KIAA2013->KIAA2013,chr1:11979648-11986485:-	JHOS2_OVARY	0.37	0.78	0.8979	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	RP11-96H19.1--RP11-446N19.1	41	62	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	6	3	0.94	0.97	0.4436	0.6708	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHOS2_OVARY	0.94	0.97	1.1144	FALSE	515	4851	409	746	0	FALSE	ACH-000132
JHOS2_OVARY	IRF3--FBP2	44	45	IRF3	4451	chr19:50165682:-	FBP2	17296	chr9:97321318:-	INCL_NON_REF_SPLICE	YES	282	1	0.24	0.99	0.476	0.4869	IRF3->chr19:50162826-50169132:-,interferon_regulatory_factor_3,FBP2->chr9:97321002-97356075:-,fructose-bisphosphatase_2	JHOS2_OVARY	0.24	0.99	0.9629	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	DUS1L--CCDC57	48	18	DUS1L	4027	chr17:80020737:-	CCDC57	49744	chr17:80059742:-	ONLY_REF_SPLICE	YES	454	42	0.13	0.61	0.5193	0.1947	LOCAL_REARRANGEMENT:-:[35573],DUS1L->chr17:80015382-80023763:-,dihydrouridine_synthase_1_like,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	JHOS2_OVARY	0.13	0.61	0.714	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	TIMM23B--LINC00843	47	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5085	0.2164	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHOS2_OVARY	1	1	0.7249	TRUE	508	994	45	981	0	FALSE	ACH-000132
JHOS2_OVARY	SAMD4B--PPFIA3	35	33	SAMD4B	8437	chr19:39847729:+	PPFIA3	42351	chr19:49651340:+	ONLY_REF_SPLICE	YES	51	0	0.57	1	0.3787	0.357	HGNC_GENEFAM,SAMD4B->chr19:39833036-39876350:+,sterile_alpha_motif_domain_containing_4B,PPFIA3->PTPRF_interacting_protein_alpha_3,chr19:49622646-49654283:+	JHOS2_OVARY	0.57	1	0.7357	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	MT-TA--MT-TC	38	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4111	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOS2_OVARY	1	1	0.4111	FALSE	462	80	0	856	0	FALSE	ACH-000132
JHOS2_OVARY	RP11-96H19.1--RP11-446N19.1	17	77	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	6	0	0.94	1	0.1839	0.8331	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHOS2_OVARY	0.94	1	1.017	FALSE	407	2205	196	549	0	FALSE	ACH-000132
JHOS2_OVARY	STK24--DOCK9	35	4	STK24	2156	chr13:99228999:-	DOCK9	72398	chr13:99462545:-	ONLY_REF_SPLICE	YES	13	58	0.75	0.4	0.3787	0.0433	STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24,DOCK9->chr13:99445741-99738879:-,dedicator_of_cytokinesis_9	JHOS2_OVARY	0.4	0.75	0.422	TRUE	0	1	0	2	1	TRUE	ACH-000132
JHOS2_OVARY	THEM6--FANCI	32	14	THEM6	1657	chr8:143809277:+	FANCI	35148	chr15:89844557:+	ONLY_REF_SPLICE	YES	35	91	0.57	0.34	0.3462	0.1515	THEM6->chr8:143808621-143818345:+,thioesterase_superfamily_member_6,FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+	JHOS2_OVARY	0.34	0.57	0.4977	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	MT-ND6--MT-TE	35	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3787	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOS2_OVARY	1	1	0.3787	FALSE	499	1288	110	792	0	FALSE	ACH-000132
JHOS2_OVARY	C15orf57--CBX3	23	25	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	68	32	0.41	0.6	0.2488	0.2705	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JHOS2_OVARY	0.41	0.6	0.5193	TRUE	267	562	48	632	0	FALSE	ACH-000132
JHOS2_OVARY	RP11-96H19.1--RP11-446N19.1	11	66	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	3	0.97	0.96	0.119	0.7141	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHOS2_OVARY	0.96	0.97	0.8331	FALSE	467	2173	244	435	0	FALSE	ACH-000132
JHOS2_OVARY	PLXDC1--TAF13	27	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2921	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	JHOS2_OVARY	1	1	0.2921	TRUE	7	10	0	216	0	FALSE	ACH-000132
JHOS2_OVARY	TIMM23--RP11-464F9.1	26	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	236	6	0.11	0.82	0.2813	0.0216	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JHOS2_OVARY	0.11	0.82	0.3029	TRUE	519	3926	326	965	0	FALSE	ACH-000132
JHOS2_OVARY	IRF3--FBP2	9	60	IRF3	4537	chr19:50165596:-	FBP2	17284	chr9:97321330:-	INCL_NON_REF_SPLICE	YES	292	1	0.19	0.99	0.0974	0.6491	IRF3->chr19:50162826-50169132:-,interferon_regulatory_factor_3,FBP2->chr9:97321002-97356075:-,fructose-bisphosphatase_2	JHOS2_OVARY	0.19	0.99	0.7465	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	RP11-96H19.1--RP11-446N19.1	2	82	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.98	1	0.0216	0.8872	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHOS2_OVARY	0.98	1	0.9088	FALSE	192	492	57	212	0	FALSE	ACH-000132
JHOS2_OVARY	MT-TC--MT-TY	22	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.238	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	JHOS2_OVARY	1	1	0.238	FALSE	51	280	19	36	0	FALSE	ACH-000132
JHOS2_OVARY	RP11-96H19.1--RP11-446N19.1	1	80	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	6	0	0.93	1	0.0108	0.8655	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHOS2_OVARY	0.93	1	0.8763	FALSE	275	511	55	178	0	FALSE	ACH-000132
JHOS2_OVARY	SLC35E2B--KIAA2013	9	45	SLC35E2B	2698	chr1:1622415:-	KIAA2013	19939	chr1:11983546:-	ONLY_REF_SPLICE	YES	30	141	0.64	0.28	0.0974	0.4869	SLC35E2B->chr1:1592939-1624167:-,solute_carrier_family_35_member_E2B,KIAA2013->KIAA2013,chr1:11979648-11986485:-	JHOS2_OVARY	0.28	0.64	0.5843	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	MT-ND6--MT-TE	20	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2164	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOS2_OVARY	1	1	0.2164	FALSE	499	1288	110	792	0	FALSE	ACH-000132
JHOS2_OVARY	RP11-123O10.4--GRIP1	15	13	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1623	0.1406	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHOS2_OVARY	1	1	0.3029	FALSE	416	2512	207	587	0	FALSE	ACH-000132
JHOS2_OVARY	SAMD4B--PPFIA3	14	11	SAMD4B	8437	chr19:39847729:+	PPFIA3	42934	chr19:49651923:+	ONLY_REF_SPLICE	YES	51	18	0.33	0.58	0.1515	0.119	HGNC_GENEFAM,SAMD4B->chr19:39833036-39876350:+,sterile_alpha_motif_domain_containing_4B,PPFIA3->PTPRF_interacting_protein_alpha_3,chr19:49622646-49654283:+	JHOS2_OVARY	0.33	0.58	0.2705	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	DUS1L--CCDC57	6	26	DUS1L	4027	chr17:80020737:-	CCDC57	46073	chr17:80065497:-	ONLY_REF_SPLICE	YES	454	12	0.07	0.73	0.0649	0.2813	LOCAL_REARRANGEMENT:-:[35573],DUS1L->chr17:80015382-80023763:-,dihydrouridine_synthase_1_like,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	JHOS2_OVARY	0.07	0.73	0.3462	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	RP11-973F15.1--RP11-94A24.1	10	9	RP11-973F15.1	3763	chr8:123682599:-	RP11-94A24.1	7870	chr8:123429261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1082	0.0974	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	JHOS2_OVARY	1	1	0.2056	TRUE	0	2	0	7	2	TRUE	ACH-000132
JHOS2_OVARY	MT-ND6--MT-TE	12	0	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1298	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOS2_OVARY	1	1	0.1298	FALSE	499	1288	110	792	0	FALSE	ACH-000132
JHOS2_OVARY	MT-TA--MT-TY	11	2	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.119	0.0216	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	JHOS2_OVARY	1	1	0.1406	FALSE	13	214	14	42	0	FALSE	ACH-000132
JHOS2_OVARY	UBE3C--TNNC1	9	8	UBE3C	15765	chr7:157000629:+	TNNC1	34858	chr3:52486529:-	ONLY_REF_SPLICE	YES	155	1	0.1	0.94	0.0974	0.0866	UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C,TNNC1->chr3:52485118-52488086:-,troponin_C1,_slow_skeletal_and_cardiac_type	JHOS2_OVARY	0.1	0.94	0.184	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	MT-TA--MT-TC	9	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0974	0.0757	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOS2_OVARY	1	1	0.1731	FALSE	462	80	0	856	0	FALSE	ACH-000132
JHOS2_OVARY	C15orf57--CBX3	8	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	67	33	0.21	0.35	0.0866	0.1082	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JHOS2_OVARY	0.21	0.35	0.1948	TRUE	267	562	48	632	0	FALSE	ACH-000132
JHOS2_OVARY	MT-ND6--MT-TE	10	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1082	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOS2_OVARY	1	1	0.1082	FALSE	499	1288	110	792	0	FALSE	ACH-000132
JHOS2_OVARY	MT-ND4--MT-ND4L	5	19	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	10	0	0.71	1	0.0541	0.2056	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHOS2_OVARY	0.71	1	0.2597	FALSE	344	826	44	306	0	FALSE	ACH-000132
JHOS2_OVARY	MT-TA--MT-TC	8	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0866	0.0649	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOS2_OVARY	1	1	0.1515	FALSE	462	80	0	856	0	FALSE	ACH-000132
JHOS2_OVARY	CTD-2008L17.1--RP11-456O19.2	8	5	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.0866	0.0541	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	JHOS2_OVARY	0.76	1	0.1407	FALSE	20	187	4	79	0	FALSE	ACH-000132
JHOS2_OVARY	MT-ND4--MT-ND4L	9	1	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	57	0	0.15	1	0.0974	0.0108	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHOS2_OVARY	0.15	1	0.1082	FALSE	344	827	44	306	0	FALSE	ACH-000132
JHOS2_OVARY	MT-TA--MT-TY	9	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0974	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	JHOS2_OVARY	1	1	0.0974	FALSE	13	214	14	42	0	FALSE	ACH-000132
JHOS2_OVARY	CTD-2337A12.1--CAST	8	3	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	54	1	0.17	0.0866	0.0325	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	JHOS2_OVARY	0.17	1	0.1191	TRUE	347	1186	183	220	0	FALSE	ACH-000132
JHOS2_OVARY	MT-ND4--MT-ND4L	5	14	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	6007	1	0	0.95	0.0541	0.1515	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHOS2_OVARY	0	0.95	0.2056	FALSE	344	827	44	306	0	FALSE	ACH-000132
JHOS2_OVARY	MT-ND4--MT-ND4L	3	19	MT-ND4	1168	chrM:10927:+	MT-ND4L	5460	chrM:10551:+	INCL_NON_REF_SPLICE	YES	13	0	0.63	1	0.0325	0.2056	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHOS2_OVARY	0.63	1	0.2381	FALSE	344	826	44	306	0	FALSE	ACH-000132
JHOS2_OVARY	MT-ND4--MT-ND4L	3	19	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	10	0	0.69	1	0.0325	0.2056	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHOS2_OVARY	0.69	1	0.2381	FALSE	344	826	44	306	0	FALSE	ACH-000132
JHOS2_OVARY	MT-ND4--MT-ND4L	5	11	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	9	0	0.64	1	0.0541	0.119	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHOS2_OVARY	0.64	1	0.1731	FALSE	344	821	44	306	0	FALSE	ACH-000132
JHOS2_OVARY	MT-ND4--MT-ND4L	6	6	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	12979	0	0	1	0.0649	0.0649	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHOS2_OVARY	0	1	0.1298	FALSE	328	800	43	304	0	FALSE	ACH-000132
JHOS2_OVARY	NRIP1--AF127936.7	7	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.69	1	0.0757	0.0216	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHOS2_OVARY	0.69	1	0.0973	FALSE	292	1546	117	613	0	FALSE	ACH-000132
JHOS2_OVARY	MT-TA--MT-TC	7	1	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0757	0.0108	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOS2_OVARY	1	1	0.0865	FALSE	462	80	0	856	0	FALSE	ACH-000132
JHOS2_OVARY	NIPA2--POLA1	7	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0757	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	JHOS2_OVARY	1	1	0.0757	TRUE	46	1352	75	139	0	FALSE	ACH-000132
JHOS2_OVARY	SCAF4--KCNE1	4	10	SCAF4	15111	chr21:33060620:-	KCNE1	27833	chr21:35831062:-	ONLY_REF_SPLICE	YES	47	0	0.23	1	0.0433	0.1082	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,KCNE1->chr21:35818988-35884573:-,potassium_voltage-gated_channel_subfamily_E_regulatory_subunit_1	JHOS2_OVARY	0.23	1	0.1515	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	CNNM4--GBP1	6	0	CNNM4	2500	chr2:97428138:+	GBP1	14438	chr1:89530975:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0	CNNM4->Oncogene{Bushman},chr2:97426639-97477628:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_4,GBP1->Oncogene{Bushman},chr1:89518002-89531043:-,guanylate_binding_protein_1	JHOS2_OVARY	1	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	DNAJC11--TTC34	6	0	DNAJC11	15303	chr1:6698355:-	TTC34	29193	chr1:2577002:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0649	0	DNAJC11->DnaJ_heat_shock_protein_family_(Hsp40)_member_C11,chr1:6694228-6761984:-,TTC34->chr1:2567415-2718286:-,tetratricopeptide_repeat_domain_34	JHOS2_OVARY	1	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	GBP1--CNNM4	5	4	GBP1	1201	chr1:89530843:-	CNNM4	18352	chr2:97462749:+	ONLY_REF_SPLICE	YES	22	21	0.29	0.3	0.0541	0.0433	GBP1->Oncogene{Bushman},chr1:89518002-89531043:-,guanylate_binding_protein_1,CNNM4->Oncogene{Bushman},chr2:97426639-97477628:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_4	JHOS2_OVARY	0.29	0.3	0.0974	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	RGS12--RBFOX3	6	0	RGS12	8553	chr4:3344780:+	RBFOX3	44493	chr17:77231887:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0649	0	RGS12->chr4:3294755-3441640:+,regulator_of_G-protein_signaling_12,RBFOX3->RNA_binding_protein,_fox-1_homolog_3,chr17:77085427-77613550:-	JHOS2_OVARY	1	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	AC016629.8--SLC52A2	5	3	AC016629.8	1281	chr19:59070776:+	SLC52A2	14268	chr8:145582844:+	ONLY_REF_SPLICE	YES	1	261	0.89	0.03	0.0541	0.0325	AC016629.8->chr19:59070496-59086164:+,SLC52A2->chr8:145577795-145584932:+,solute_carrier_family_52_member_2	JHOS2_OVARY	0.03	0.89	0.0866	TRUE	0	0	0	1	0	FALSE	ACH-000132
JHOS2_OVARY	SCAF4--KCNE1	3	10	SCAF4	15111	chr21:33060620:-	KCNE1	27861	chr21:35831034:-	ONLY_REF_SPLICE	YES	47	1	0.22	0.93	0.0325	0.1082	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,KCNE1->chr21:35818988-35884573:-,potassium_voltage-gated_channel_subfamily_E_regulatory_subunit_1	JHOS2_OVARY	0.22	0.93	0.1407	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	TECPR2--PPP2R5C	4	6	TECPR2	7177	chr14:102891628:+	PPP2R5C	42088	chr14:102285329:+	ONLY_REF_SPLICE	YES	20	410	0.33	0.02	0.0433	0.0649	TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2,PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma	JHOS2_OVARY	0.02	0.33	0.1082	TRUE	0	0	0	1	0	FALSE	ACH-000132
JHOS2_OVARY	CALM2--PLCL1	5	0	CALM2	5840	chr2:47397873:-	PLCL1	33013	chr2:199436078:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0541	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,PLCL1->Oncogene{Bushman},chr2:198669426-199437305:+,phospholipase_C_like_1	JHOS2_OVARY	1	1	0.0541	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	MT-ND6--MT-TE	5	0	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0541	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOS2_OVARY	1	1	0.0541	FALSE	499	1288	110	792	0	FALSE	ACH-000132
JHOS2_OVARY	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0541	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOS2_OVARY	1	1	0.0541	FALSE	499	1288	110	792	0	FALSE	ACH-000132
JHOS2_OVARY	MT-TA--MT-TY	4	4	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0.0433	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	JHOS2_OVARY	1	1	0.0866	FALSE	13	214	14	42	0	FALSE	ACH-000132
JHOS2_OVARY	MT-TA--MT-TC	3	6	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0.0649	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOS2_OVARY	1	1	0.0974	FALSE	462	80	0	856	0	FALSE	ACH-000132
JHOS2_OVARY	TECPR2--PPP2R5C	3	6	TECPR2	7177	chr14:102891628:+	PPP2R5C	45556	chr14:102290351:+	ONLY_REF_SPLICE	YES	20	408	0.31	0.02	0.0325	0.0649	TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2,PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma	JHOS2_OVARY	0.02	0.31	0.0974	TRUE	0	0	0	1	0	FALSE	ACH-000132
JHOS2_OVARY	MT-TC--MT-TY	4	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	JHOS2_OVARY	1	1	0.0433	FALSE	51	280	19	36	0	FALSE	ACH-000132
JHOS2_OVARY	RP4-565E6.1--HYDIN	3	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	2	1	0.78	0.0325	0.0433	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	JHOS2_OVARY	0.78	1	0.0758	TRUE	456	1387	91	133	0	FALSE	ACH-000132
JHOS2_OVARY	XPR1--RP11-522D2.1	3	2	XPR1	2319	chr1:180651547:+	RP11-522D2.1	27467	chr1:180531340:+	ONLY_REF_SPLICE	YES	78	0	0.06	1	0.0325	0.0216	LOCAL_REARRANGEMENT:+:[65486],XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,RP11-522D2.1->chr1:180528112-180535654:+	JHOS2_OVARY	0.06	1	0.0541	TRUE	0	8	0	2	8	TRUE	ACH-000132
JHOS2_OVARY	BAG6--SLC44A4	3	1	BAG6	2050	chr6:31619433:-	SLC44A4	25651	chr6:31833561:-	ONLY_REF_SPLICE	YES	218	0	0.02	1	0.0325	0.0108	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},BAG6->BCL2_associated_athanogene_6,chr6:31606805-31620482:-,SLC44A4->Oncogene{Bushman},chr6:31830969-31846823:-,solute_carrier_family_44_member_4	JHOS2_OVARY	0.02	1	0.0433	TRUE	0	0	0	2	0	FALSE	ACH-000132
JHOS2_OVARY	MT-ND4--MT-ND4L	3	1	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	21	0	0.16	1	0.0325	0.0108	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHOS2_OVARY	0.16	1	0.0433	FALSE	344	826	44	306	0	FALSE	ACH-000132
JHOS2_OVARY	STK24--DOCK9	2	5	STK24	2906	chr13:99228249:-	DOCK9	72398	chr13:99462545:-	ONLY_REF_SPLICE	YES	24	58	0.23	0.11	0.0216	0.0541	STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24,DOCK9->chr13:99445741-99738879:-,dedicator_of_cytokinesis_9	JHOS2_OVARY	0.11	0.23	0.0757	TRUE	0	1	0	2	1	TRUE	ACH-000132
JHOS2_OVARY	AC104389.28--HBE1	3	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JHOS2_OVARY	1	1	0.0325	TRUE	0	16	0	53	13	FALSE	ACH-000132
JHOS2_OVARY	AC104389.28--HBE1	3	0	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JHOS2_OVARY	1	1	0.0325	TRUE	0	48	0	65	48	FALSE	ACH-000132
JHOS2_OVARY	DPH6-AS1--RP11-684B21.1	3	0	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	JHOS2_OVARY	1	1	0.0325	TRUE	17	119	17	33	0	FALSE	ACH-000132
JHOS2_OVARY	MGAT5--LHFPL3	3	0	MGAT5	1309	chr2:134877862:+	LHFPL3	35469	chr7:104546634:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,LHFPL3->chr7:103969104-104549001:+,lipoma_HMGIC_fusion_partner-like_3	JHOS2_OVARY	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHOS2_OVARY	1	1	0.0325	FALSE	344	821	44	306	0	FALSE	ACH-000132
JHOS2_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOS2_OVARY	1	1	0.0325	FALSE	499	1288	110	792	0	FALSE	ACH-000132
JHOS2_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOS2_OVARY	1	1	0.0325	FALSE	499	1288	110	792	0	FALSE	ACH-000132
JHOS2_OVARY	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	JHOS2_OVARY	1	1	0.0325	TRUE	22	156	2	142	0	FALSE	ACH-000132
JHOS2_OVARY	NRIP1--AF127936.7	1	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	45	0	0.13	1	0.0108	0.0649	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHOS2_OVARY	0.13	1	0.0757	FALSE	164	806	69	479	0	FALSE	ACH-000132
JHOS2_OVARY	BAZ2B--DCUN1D2	2	0	BAZ2B	1451	chr2:160472753:-	DCUN1D2	67972	chr13:114117206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-,DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	DCAF16--HMGB1	2	0	DCAF16	1312	chr4:17812070:-	HMGB1	15653	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	DCAF16->DDB1_and_CUL4_associated_factor_16,chr4:17802278-17812381:-,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	DUS1L--CCDC57	2	0	DUS1L	2065	chr17:80022699:-	CCDC57	49744	chr17:80059742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LOCAL_REARRANGEMENT:-:[35573],DUS1L->chr17:80015382-80023763:-,dihydrouridine_synthase_1_like,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	FNDC3B--FUS	2	0	FNDC3B	6332	chr3:171851336:+	FUS	54674	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	GOLGB1--PIK3CA	2	0	GOLGB1	1124	chr3:121468479:-	PIK3CA	36820	chr3:178916538:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GOLGB1->chr3:121382046-121468602:-,golgin_B1,PIK3CA->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr3:178865902-178957881:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_alpha	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	HNRNPA2B1--GNAS	2	0	HNRNPA2B1	1958	chr7:26240192:-	GNAS	30423	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	3	0	TRUE	ACH-000132
JHOS2_OVARY	KLF6--HNRNPH1	2	0	KLF6	4009	chr10:3823833:-	HNRNPH1	20894	chr5:179045324:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	KLF6->Kruppel-like_factor_6,Oncogene{Bushman},chr10:3818188-3827473:-,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	RNF213--TOP2A	2	0	RNF213	41437	chr17:78325603:+	TOP2A	101512	chr17:38546416:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,TOP2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38544768-38574202:-,topoisomerase_(DNA)_II_alpha	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	RP11-120D5.1--MID1	2	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHOS2_OVARY	1	1	0.0216	FALSE	0	48	1	163	0	FALSE	ACH-000132
JHOS2_OVARY	RP11-146F11.5--HSD17B7	2	0	RP11-146F11.5	1188	chr16:30597415:+	HSD17B7	12227	chr1:162769533:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	RP11-146F11.5->chr16:30597228-30619914:+,HSD17B7->chr1:162760492-162782607:+,hydroxysteroid_(17-beta)_dehydrogenase_7	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	RP11-632K20.7--DHX35	2	0	RP11-632K20.7	9146	chr15:32815230:-	DHX35	37879	chr20:37667142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	RP11-632K20.7->chr15:32812049-32829127:-,DHX35->DEAH-box_helicase_35,chr20:37590942-37668366:+	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	SPOCK2--CYHR1	2	0	SPOCK2	1893	chr10:73847898:-	CYHR1	28008	chr8:145678843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	SPOCK2->chr10:73818793-73848790:-,sparc/osteonectin,_cwcv_and_kazal-like_domains_proteoglycan_(testican)_2,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	TECPR2--PPP2R5C	1	4	TECPR2	7177	chr14:102891628:+	PPP2R5C	48569	chr14:102302506:+	ONLY_REF_SPLICE	YES	20	405	0.2	0.01	0.0108	0.0433	TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2,PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma	JHOS2_OVARY	0.01	0.2	0.0541	FALSE	0	0	0	1	0	FALSE	ACH-000132
JHOS2_OVARY	TECPR2--PPP2R5C	1	4	TECPR2	7177	chr14:102891628:+	PPP2R5C	47465	chr14:102298038:+	ONLY_REF_SPLICE	NO	20	404	0.2	0.01	0.0108	0.0433	TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2,PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma	JHOS2_OVARY	0.01	0.2	0.0541	FALSE	0	0	0	1	0	FALSE	ACH-000132
JHOS2_OVARY	TEFM--RBM39	2	0	TEFM	3117	chr17:29231084:-	RBM39	21282	chr20:34313077:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	TEFM->chr17:29224354-29233838:-,transcription_elongation_factor,_mitochondrial,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	TMEM126B--ULK4	2	0	TMEM126B	1104	chr11:85339732:+	ULK4	44416	chr3:41705190:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	TMEM126B->chr11:85339629-85347580:+,transmembrane_protein_126B,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	TMEM14A--RHOA	2	0	TMEM14A	3325	chr6:52546712:+	RHOA	12267	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	TMEM14A->chr6:52535907-52551386:+,transmembrane_protein_14A,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	TRA2B--AKIRIN2	2	0	TRA2B	5984	chr3:185649365:-	AKIRIN2	27602	chr6:88385649:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),AKIRIN2->akirin_2,chr6:88384790-88411927:-	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	USP10--COTL1	2	0	USP10	7066	chr16:84767109:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	5	0	TRUE	ACH-000132
JHOS2_OVARY	VAV2--ILF3	2	0	VAV2	2729	chr9:136804225:-	ILF3	56783	chr19:10799855:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	ZNF286A--ARL13B	2	0	ZNF286A	5099	chr17:15611561:+	ARL13B	36156	chr3:93768250:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ZNF286A->chr17:15602891-15640874:+,chr17:15603006-15648092:+,zinc_finger_protein_286A,ARL13B->ADP_ribosylation_factor_like_GTPase_13B,chr3:93698983-93774512:+	JHOS2_OVARY	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	NRIP1--AF127936.7	1	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.13	1	0.0108	0.0325	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHOS2_OVARY	0.13	1	0.0433	FALSE	125	705	46	456	0	FALSE	ACH-000132
JHOS2_OVARY	SCAF4--KCNE1	1	3	SCAF4	15111	chr21:33060620:-	KCNE1	30300	chr21:35821982:-	ONLY_REF_SPLICE	YES	47	4	0.08	0.5	0.0108	0.0325	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,KCNE1->chr21:35818988-35884573:-,potassium_voltage-gated_channel_subfamily_E_regulatory_subunit_1	JHOS2_OVARY	0.08	0.5	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000132
JHOS2_OVARY	BCR--ABL1	1	2	BCR	21553	chr22:23632600:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	NO	68	44	0.04	0.06	0.0108	0.0216	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	JHOS2_OVARY	0.04	0.06	0.0324	TRUE	0	2	1	16	2	TRUE	ACH-000132
JHOS2_OVARY	CTD-2008L17.1--RP11-456O19.2	1	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0108	0.0216	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	JHOS2_OVARY	0.43	1	0.0324	FALSE	33	240	4	98	0	FALSE	ACH-000132
JHOS2_OVARY	DNAJC25--UGCG	1	2	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	437	288	0.01	0.01	0.0108	0.0216	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	JHOS2_OVARY	0.01	0.01	0.0324	FALSE	50	73	10	50	0	FALSE	ACH-000132
JHOS2_OVARY	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	NO	6	48	0.33	0.06	0.0108	0.0216	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHOS2_OVARY	0.06	0.33	0.0324	FALSE	0	23	1	67	0	FALSE	ACH-000132
JHOS2_OVARY	RP11-973F15.1--RP11-94A24.1	1	2	RP11-973F15.1	1226	chr8:123706120:-	RP11-94A24.1	7870	chr8:123429261:-	ONLY_REF_SPLICE	YES	35	0	0.08	1	0.0108	0.0216	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	JHOS2_OVARY	0.08	1	0.0324	TRUE	0	2	0	5	1	TRUE	ACH-000132
JHOS2_OVARY	RP4-565E6.1--HYDIN	1	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	NO	0	4	1	0.43	0.0108	0.0216	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	JHOS2_OVARY	0.43	1	0.0324	TRUE	84	87	4	41	0	FALSE	ACH-000132
JHOS2_OVARY	SAMD12--EIF3H	1	2	SAMD12	2373	chr8:119592954:-	EIF3H	30065	chr8:117671219:-	ONLY_REF_SPLICE	YES	87	2698	0.03	0	0.0108	0.0216	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hypothalamus=1},SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	JHOS2_OVARY	0	0.03	0.0324	FALSE	0	1	0	2	0	FALSE	ACH-000132
JHOS2_OVARY	DTNA--ZNF24	1	1	DTNA	1225	chr18:32073478:+	ZNF24	56869	chr18:32920697:-	ONLY_REF_SPLICE	YES	19	4	0.1	0.33	0.0108	0.0108	DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha,ZNF24->chr18:32912176-32925446:-,zinc_finger_protein_24	JHOS2_OVARY	0.1	0.33	0.0216	TRUE	0	0	0	2	0	TRUE	ACH-000132
JHOS2_OVARY	EIF4A2--SRSF1	1	1	EIF4A2	5678	chr3:186505671:+	SRSF1	13002	chr17:56082402:-	ONLY_REF_SPLICE	NO	2374	597	0	0	0.0108	0.0108	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	JHOS2_OVARY	0	0	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000132
JHOS2_OVARY	HNRNPH1--TNPO2	1	1	HNRNPH1	4526	chr5:179050038:-	TNPO2	19407	chr19:12831804:-	ONLY_REF_SPLICE	YES	450	23	0	0.08	0.0108	0.0108	HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),TNPO2->chr19:12810008-12834825:-,transportin_2	JHOS2_OVARY	0	0.08	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000132
JHOS2_OVARY	NAP1L1--KIF21A	1	1	NAP1L1	6253	chr12:76461151:-	KIF21A	60912	chr12:39688319:-	ONLY_REF_SPLICE	NO	1743	30	0	0.06	0.0108	0.0108	NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1,KIF21A->chr12:39687030-39837192:-,kinesin_family_member_21A	JHOS2_OVARY	0	0.06	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000132
JHOS2_OVARY	NRAS--CSDE1	1	1	NRAS	1845	chr1:115258671:-	CSDE1	25355	chr1:115275437:-	ONLY_REF_SPLICE	YES	379	1296	0.01	0	0.0108	0.0108	LOCAL_REARRANGEMENT:-:[19],NRAS->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr1:115247090-115259515:-,neuroblastoma_RAS_viral_oncogene_homolog,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	JHOS2_OVARY	0	0.01	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000132
JHOS2_OVARY	RP5-886K2.3--LLGL2	1	1	RP5-886K2.3	2405	chr1:24098601:-	LLGL2	23413	chr17:73564557:+	ONLY_REF_SPLICE	YES	17	103	0.11	0.02	0.0108	0.0108	RP5-886K2.3->chr1:24086872-24104777:-,LLGL2->LLGL2,_scribble_cell_polarity_complex_component,chr17:73521161-73571289:+	JHOS2_OVARY	0.02	0.11	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000132
JHOS2_OVARY	TECPR2--PPP2R5C	1	1	TECPR2	5864	chr14:102881130:+	PPP2R5C	47465	chr14:102298038:+	ONLY_REF_SPLICE	NO	22	404	0.08	0	0.0108	0.0108	TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2,PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma	JHOS2_OVARY	0	0.08	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000132
JHOS2_OVARY	TECPR2--PPP2R5C	1	1	TECPR2	7177	chr14:102891628:+	PPP2R5C	50102	chr14:102323023:+	ONLY_REF_SPLICE	NO	20	365	0.09	0.01	0.0108	0.0108	TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2,PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma	JHOS2_OVARY	0.01	0.09	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000132
SKNFI_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	267	52	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.3665	0.4609	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKNFI_AUTONOMIC_GANGLIA	1	1	2.8274	TRUE	508	994	45	981	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	PCNX--AC011625.1	147	22	PCNX	1599	chr14:71374720:+	AC011625.1	60362	chr7:132052402:+	ONLY_REF_SPLICE	YES	6	0	0.97	1	1.3029	0.195	PCNX->chr14:71374122-71582099:+,AC011625.1->chr7:132037093-132052735:+	SKNFI_AUTONOMIC_GANGLIA	0.97	1	1.4979	TRUE	0	0	0	1	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	NF1--RAB11FIP4	134	53	NF1	28958	chr17:29576137:+	RAB11FIP4	85998	chr17:29844669:+	ONLY_REF_SPLICE	YES	15	3	0.93	0.98	1.1877	0.4698	{Klijn_CCL:Brain=2},NEIGHBORS[9508],NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,RAB11FIP4->RAB11_family_interacting_protein_4,chr17:29718642-29865236:+	SKNFI_AUTONOMIC_GANGLIA	0.93	0.98	1.6575	FALSE	0	1	0	1	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	142	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	367	7	0.29	0.95	1.2586	0.0443	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKNFI_AUTONOMIC_GANGLIA	0.29	0.95	1.3029	TRUE	519	3926	326	965	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	HSPBP1--ZSWIM6	139	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.232	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	SKNFI_AUTONOMIC_GANGLIA	1	1	1.232	TRUE	47	32	1	28	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	AP003900.6--AC011718.2	88	11	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.78	0.0975	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SKNFI_AUTONOMIC_GANGLIA	0.99	1	0.8775	TRUE	0	3	0	38	3	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	EEF1DP3--FRY	61	29	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	4	0	0.96	1	0.5407	0.257	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	SKNFI_AUTONOMIC_GANGLIA	0.96	1	0.7977	FALSE	20	24	2	21	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	NF1--RAB11FIP4	49	61	NF1	32839	chr17:29580018:+	RAB11FIP4	85998	chr17:29844669:+	ONLY_REF_SPLICE	YES	2	3	0.98	0.97	0.4343	0.5407	{Klijn_CCL:Brain=2},NEIGHBORS[9508],NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,RAB11FIP4->RAB11_family_interacting_protein_4,chr17:29718642-29865236:+	SKNFI_AUTONOMIC_GANGLIA	0.97	0.98	0.975	FALSE	0	0	0	1	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	ZNF654--HMGB2	58	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5141	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKNFI_AUTONOMIC_GANGLIA	1	1	0.5141	TRUE	0	0	0	518	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	54	11	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	43	1	0.6	0.4786	0.0975	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKNFI_AUTONOMIC_GANGLIA	0.6	1	0.5761	TRUE	458	1351	185	561	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	52	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	172	1	0.24	0.4609	0.0266	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKNFI_AUTONOMIC_GANGLIA	0.24	1	0.4875	TRUE	465	1949	224	605	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	13	140	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	7	1	0.96	0.99	0.1152	1.2409	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKNFI_AUTONOMIC_GANGLIA	0.96	0.99	1.3561	FALSE	344	826	44	306	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	5	139	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	6	0	0.96	1	0.0443	1.232	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKNFI_AUTONOMIC_GANGLIA	0.96	1	1.2763	FALSE	344	826	44	306	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	AP003900.6--AC011718.2	32	27	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2836	0.2393	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SKNFI_AUTONOMIC_GANGLIA	1	1	0.5229	TRUE	0	5	0	45	5	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ND6--MT-ND5	37	1	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1131	1	0.03	0.3279	0.0089	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SKNFI_AUTONOMIC_GANGLIA	0.03	1	0.3368	FALSE	101	855	57	72	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-TA--MT-TC	35	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3102	0.0266	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKNFI_AUTONOMIC_GANGLIA	1	1	0.3368	FALSE	462	80	0	856	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	PLXDC1--TAF13	35	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3102	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SKNFI_AUTONOMIC_GANGLIA	1	1	0.3102	TRUE	7	10	0	216	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	C15orf57--CBX3	25	17	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	52	28	0.45	0.6	0.2216	0.1507	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKNFI_AUTONOMIC_GANGLIA	0.45	0.6	0.3723	TRUE	267	562	48	632	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	96	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0266	0.8509	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKNFI_AUTONOMIC_GANGLIA	0.99	1	0.8775	FALSE	344	821	44	306	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	NF1--RAB11FIP4	13	54	NF1	28958	chr17:29576137:+	RAB11FIP4	84593	chr17:29836095:+	ONLY_REF_SPLICE	YES	15	0	0.82	1	0.1152	0.4786	{Klijn_CCL:Brain=2},NEIGHBORS[9508],NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,RAB11FIP4->RAB11_family_interacting_protein_4,chr17:29718642-29865236:+	SKNFI_AUTONOMIC_GANGLIA	0.82	1	0.5938	FALSE	0	1	0	1	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	RP4-565E6.1--HYDIN	25	5	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	9	1	0.77	0.2216	0.0443	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SKNFI_AUTONOMIC_GANGLIA	0.77	1	0.2659	TRUE	456	1387	91	133	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	NF1--RAB11FIP4	5	63	NF1	32839	chr17:29580018:+	RAB11FIP4	84593	chr17:29836095:+	ONLY_REF_SPLICE	YES	2	0	0.97	1	0.0443	0.5584	{Klijn_CCL:Brain=2},NEIGHBORS[9508],NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,RAB11FIP4->RAB11_family_interacting_protein_4,chr17:29718642-29865236:+	SKNFI_AUTONOMIC_GANGLIA	0.97	1	0.6027	FALSE	0	0	0	1	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	SYN2--PPARG	16	13	SYN2	15433	chr3:12224872:+	PPARG	31437	chr3:12421203:+	ONLY_REF_SPLICE	YES	535	1	0.05	0.97	0.1418	0.1152	NEIGHBORS[95967],SYN2->chr3:12045876-12232900:+,synapsin_II,PPARG->Oncogene{Bushman},chr3:12328867-12475855:+,peroxisome_proliferator_activated_receptor_gamma	SKNFI_AUTONOMIC_GANGLIA	0.05	0.97	0.257	FALSE	4	3	0	1	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	AP003900.6--AC011718.2	17	3	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	1	1	0.95	0.95	0.1507	0.0266	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SKNFI_AUTONOMIC_GANGLIA	0.95	0.95	0.1773	TRUE	0	1	0	26	1	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	17	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1507	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKNFI_AUTONOMIC_GANGLIA	1	1	0.1507	FALSE	292	1546	117	613	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	C15orf57--CBX3	14	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	49	29	0.34	0.46	0.1241	0.0975	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKNFI_AUTONOMIC_GANGLIA	0.34	0.46	0.2216	TRUE	267	562	48	632	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	PCDH15--RP11-168O22.1	16	2	PCDH15	1318	chr10:57387385:-	RP11-168O22.1	68273	chr10:57335471:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1418	0.0177	GTEx_FI:{Adrenal_Gland=[count:35=pct:41.2],Pituitary=[count:2=pct:3.8],Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3]},PCDH15->chr10:55562531-57387702:-,protocadherin-related_15,RP11-168O22.1->chr10:57007515-57356993:-	SKNFI_AUTONOMIC_GANGLIA	1	1	0.1595	TRUE	32	58	0	7	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	5	45	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0443	0.3988	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKNFI_AUTONOMIC_GANGLIA	0.98	1	0.4431	FALSE	344	821	44	306	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	13	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	19	0	0.55	1	0.1152	0.0886	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNFI_AUTONOMIC_GANGLIA	0.55	1	0.2038	FALSE	499	1288	110	792	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	12	13	TIMM23B	4780	chr10:51381846:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	208	0	0.11	1	0.1064	0.1152	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKNFI_AUTONOMIC_GANGLIA	0.11	1	0.2216	TRUE	0	0	0	1	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	14	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1241	0.0355	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNFI_AUTONOMIC_GANGLIA	1	1	0.1596	FALSE	499	1288	110	792	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	CASC9--RP11-300E4.2	14	2	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	22	0	0.42	1	0.1241	0.0177	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	SKNFI_AUTONOMIC_GANGLIA	0.42	1	0.1418	TRUE	0	23	0	19	23	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	RP11-108K3.1--GLDN	10	6	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	2	1	0.89	0.94	0.0886	0.0532	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SKNFI_AUTONOMIC_GANGLIA	0.89	0.94	0.1418	FALSE	0	19	0	46	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	AP003900.6--AC011718.2	11	0	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0975	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0975	TRUE	0	1	0	21	1	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	CTD-2337A12.1--CAST	10	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	7	1	0.63	0.0886	0.0177	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SKNFI_AUTONOMIC_GANGLIA	0.63	1	0.1063	TRUE	347	1186	183	220	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	DSCR4--KCNJ6	9	6	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0798	0.0532	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	SKNFI_AUTONOMIC_GANGLIA	0.94	1	0.133	FALSE	0	24	0	27	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	PCNX--AC011625.1	4	22	PCNX	1599	chr14:71374720:+	AC011625.1	59218	chr7:132050683:+	ONLY_REF_SPLICE	YES	6	0	0.81	1	0.0355	0.195	PCNX->chr14:71374122-71582099:+,AC011625.1->chr7:132037093-132052735:+	SKNFI_AUTONOMIC_GANGLIA	0.81	1	0.2305	TRUE	0	0	0	1	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	6	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0532	0.0886	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNFI_AUTONOMIC_GANGLIA	1	1	0.1418	FALSE	499	1288	110	792	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	8	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	38	0	0.21	1	0.0709	0.0177	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKNFI_AUTONOMIC_GANGLIA	0.21	1	0.0886	FALSE	164	806	69	479	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	EEF1DP3--FRY	1	29	EEF1DP3	3331	chr13:32520318:+	FRY	12212	chr13:32612567:+	ONLY_REF_SPLICE	YES	4	0	0.88	1	0.0089	0.257	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	SKNFI_AUTONOMIC_GANGLIA	0.88	1	0.2659	FALSE	1	3	0	6	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	SYN2--PPARG	5	13	SYN2	15433	chr3:12224872:+	PPARG	27899	chr3:12353879:+	ONLY_REF_SPLICE	YES	535	1	0.03	0.95	0.0443	0.1152	NEIGHBORS[95967],SYN2->chr3:12045876-12232900:+,synapsin_II,PPARG->Oncogene{Bushman},chr3:12328867-12475855:+,peroxisome_proliferator_activated_receptor_gamma	SKNFI_AUTONOMIC_GANGLIA	0.03	0.95	0.1595	FALSE	2	2	0	1	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	4	16	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	17	0	0.54	1	0.0355	0.1418	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKNFI_AUTONOMIC_GANGLIA	0.54	1	0.1773	FALSE	344	827	44	306	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	7	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.062	0.0355	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0975	FALSE	499	1288	110	792	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	20	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0.1773	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNFI_AUTONOMIC_GANGLIA	1	1	0.2039	FALSE	499	1288	110	792	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	NPM1P24--SET	8	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0709	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0709	TRUE	0	0	0	434	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-TA--MT-TC	7	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.062	0.0266	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0886	FALSE	462	80	0	856	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	SYN2--PPARG	5	9	SYN2	14372	chr3:12211406:+	PPARG	31437	chr3:12421203:+	ONLY_REF_SPLICE	YES	653	1	0.02	0.93	0.0443	0.0798	NEIGHBORS[95967],SYN2->chr3:12045876-12232900:+,synapsin_II,PPARG->Oncogene{Bushman},chr3:12328867-12475855:+,peroxisome_proliferator_activated_receptor_gamma	SKNFI_AUTONOMIC_GANGLIA	0.02	0.93	0.1241	FALSE	6	2	0	1	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	16	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	8	0	0.7	1	0.0266	0.1418	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKNFI_AUTONOMIC_GANGLIA	0.7	1	0.1684	FALSE	344	826	44	306	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	PCNX--AC011625.1	3	16	PCNX	1599	chr14:71374720:+	AC011625.1	60375	chr7:132052415:+	INCL_NON_REF_SPLICE	YES	6	0	0.76	1	0.0266	0.1418	PCNX->chr14:71374122-71582099:+,AC011625.1->chr7:132037093-132052735:+	SKNFI_AUTONOMIC_GANGLIA	0.76	1	0.1684	TRUE	0	0	0	1	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	15	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	18	0	0.5	1	0.0266	0.1329	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNFI_AUTONOMIC_GANGLIA	0.5	1	0.1595	FALSE	499	1288	110	792	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3371	0	0	1	0.0532	0.0089	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKNFI_AUTONOMIC_GANGLIA	0	1	0.0621	FALSE	13	9	0	364	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	RP11-108K3.1--GLDN	5	3	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	1	3	0.89	0.73	0.0443	0.0266	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SKNFI_AUTONOMIC_GANGLIA	0.73	0.89	0.0709	FALSE	1	20	0	46	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	GDAP1--RP11-758M4.1	5	2	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	128	5	0.05	0.58	0.0443	0.0177	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	SKNFI_AUTONOMIC_GANGLIA	0.05	0.58	0.062	TRUE	7	28	0	43	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	AP003900.6--AC011718.2	3	9	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0266	0.0798	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SKNFI_AUTONOMIC_GANGLIA	0.92	1	0.1064	TRUE	0	1	0	20	1	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	LINC01036--LINC01037	5	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0.0089	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0532	FALSE	0	24	0	62	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	RP11-120D5.1--MID1	5	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	2	0.75	0.75	0.0443	0.0089	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKNFI_AUTONOMIC_GANGLIA	0.75	0.75	0.0532	FALSE	16	356	14	466	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	RP4-565E6.1--HYDIN	5	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	14	1	0.3	0.0443	0.0089	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SKNFI_AUTONOMIC_GANGLIA	0.3	1	0.0532	TRUE	84	87	4	41	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	EEF1DP3--FRY	4	4	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	22	0	0.27	1	0.0355	0.0355	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	SKNFI_AUTONOMIC_GANGLIA	0.27	1	0.071	FALSE	18	26	2	21	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	LINC00473--PDE10A	4	3	LINC00473	1520	chr6:166401017:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	38	0	0.16	1	0.0355	0.0266	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	SKNFI_AUTONOMIC_GANGLIA	0.16	1	0.0621	FALSE	6	13	0	15	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-TA--MT-TC	4	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.0266	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0621	FALSE	462	80	0	856	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	AP003900.6--AC011718.2	1	14	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0089	0.1241	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SKNFI_AUTONOMIC_GANGLIA	0.94	1	0.133	TRUE	0	0	0	21	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	RP11-603B24.1--HERC2P3	4	2	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	26	1	0.19	0.0355	0.0177	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	SKNFI_AUTONOMIC_GANGLIA	0.19	1	0.0532	TRUE	27	10	1	20	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	4	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3405	0	0	1	0.0355	0.0089	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKNFI_AUTONOMIC_GANGLIA	0	1	0.0444	FALSE	13	9	0	364	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	LINC00693--RBMS3	4	1	LINC00693	2706	chr3:28617987:+	RBMS3	11220	chr3:29476234:+	ONLY_REF_SPLICE	YES	16	49	0.24	0.09	0.0355	0.0089	LINC00693->chr3:28616282-28799831:+,long_intergenic_non-protein_coding_RNA_693,RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+	SKNFI_AUTONOMIC_GANGLIA	0.09	0.24	0.0444	TRUE	1	0	0	2	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ND6--MT-ND5	4	1	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	1089	1	0	0.0355	0.0089	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SKNFI_AUTONOMIC_GANGLIA	0	1	0.0444	FALSE	101	855	57	72	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	RP11-1L12.3--SLC5A12	3	5	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	5	0	0.62	1	0.0266	0.0443	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	SKNFI_AUTONOMIC_GANGLIA	0.62	1	0.0709	TRUE	3	101	0	60	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	SYN2--PPARG	2	9	SYN2	14372	chr3:12211406:+	PPARG	27899	chr3:12353879:+	ONLY_REF_SPLICE	YES	653	1	0.02	0.92	0.0177	0.0798	NEIGHBORS[95967],SYN2->chr3:12045876-12232900:+,synapsin_II,PPARG->Oncogene{Bushman},chr3:12328867-12475855:+,peroxisome_proliferator_activated_receptor_gamma	SKNFI_AUTONOMIC_GANGLIA	0.02	0.92	0.0975	FALSE	1	0	0	1	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	3	5	TIMM23B	4466	chr10:51381532:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	265	0	0.03	1	0.0266	0.0443	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKNFI_AUTONOMIC_GANGLIA	0.03	1	0.0709	TRUE	0	0	0	1	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	CTD-2281E23.2--DLGAP2	4	0	CTD-2281E23.2	3418	chr8:1208883:+	DLGAP2	8510	chr8:1449532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0	GTEx_FI:{Testis=[count:34=pct:32.4],Brain=[count:24=pct:3.6],Pituitary=[count:4=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Thyroid=[count:2=pct:1.1]},CTD-2281E23.2->chr8:1054882-1212580:+,DLGAP2->chr8:1449532-1656642:+,discs_large_homolog_associated_protein_2	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0355	TRUE	49	61	1	13	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	4	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0355	FALSE	499	1288	110	792	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	RNF152--RP11-879F14.1	4	0	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0355	FALSE	275	472	65	43	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	RP11-108K3.1--GLDN	3	4	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	1	0.88	0.88	0.0266	0.0355	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SKNFI_AUTONOMIC_GANGLIA	0.88	0.88	0.0621	FALSE	0	30	1	55	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	RP11-108K3.1--GLDN	3	3	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	2	3	0.75	0.67	0.0266	0.0266	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SKNFI_AUTONOMIC_GANGLIA	0.67	0.75	0.0532	FALSE	0	14	0	30	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	ABCC5--ORC1	3	0	ABCC5	8141	chr3:183705558:-	ORC1	55361	chr1:52841271:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	ABCC5->ATP_binding_cassette_subfamily_C_member_5,chr3:183637722-183735803:-,ORC1->chr1:52838501-52870131:-,origin_recognition_complex_subunit_1	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	3	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0266	FALSE	183	104	9	328	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0266	FALSE	183	104	9	328	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0266	FALSE	344	821	44	306	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0266	TRUE	0	0	0	434	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0266	TRUE	0	0	0	434	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	RP11-108K3.1--GLDN	2	4	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	2	2	0.75	0.75	0.0177	0.0355	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SKNFI_AUTONOMIC_GANGLIA	0.75	0.75	0.0532	FALSE	0	14	0	30	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	3	0	TIMM23	4782	chr10:51612904:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0266	TRUE	4	2	0	9	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0.0177	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0354	FALSE	515	4851	409	746	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	AP003900.6--AC011718.2	2	1	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	0	5	1	0.38	0.0177	0.0089	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SKNFI_AUTONOMIC_GANGLIA	0.38	1	0.0266	TRUE	0	1	0	24	1	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	RP11-1L12.3--SLC5A12	1	5	RP11-1L12.3	3619	chr11:27238864:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	NO	23	0	0.21	1	0.0089	0.0443	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	SKNFI_AUTONOMIC_GANGLIA	0.21	1	0.0532	TRUE	0	0	0	2	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	CSTF3--ZNF207	2	0	CSTF3	5593	chr11:33163213:-	ZNF207	36731	chr17:30694791:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	CSTF3->chr11:33098734-33183917:-,cleavage_stimulation_factor_subunit_3,ZNF207->chr17:30677136-30708905:+,zinc_finger_protein_207	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	DUSP15--ITGA6	2	0	DUSP15	4317	chr20:30452756:-	ITGA6	22698	chr2:173338783:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	DUSP15->chr20:30435440-30458550:-,dual_specificity_phosphatase_15,ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	GPS1--PTTG1IP	2	0	GPS1	2274	chr17:80009840:+	PTTG1IP	14929	chr21:46281186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	GPS1->G_protein_pathway_suppressor_1,chr17:80008567-80015346:+,PTTG1IP->Oncogene{Bushman},chr21:46269500-46293752:-,pituitary_tumor-transforming_1_interacting_protein	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	LINC01036--LINC01037	2	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0177	FALSE	0	26	0	50	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	PDSS2--COG5	2	0	PDSS2	2710	chr6:107655402:-	COG5	30108	chr7:106938791:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2,COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	POLE4--RP11-355F16.1	2	0	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0177	TRUE	5	7	0	37	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	STMN2--GNAS	2	0	STMN2	1401	chr8:80523449:+	GNAS	27719	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	STMN2->chr8:80523049-80578410:+,stathmin_2,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0177	TRUE	5	8	0	33	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	LINC00473--PDE10A	1	3	LINC00473	9097	chr6:166324296:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	NO	6	0	0.4	1	0.0089	0.0266	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	SKNFI_AUTONOMIC_GANGLIA	0.4	1	0.0355	FALSE	2	5	0	11	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	CTD-2337A12.1--CAST	1	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	NO	0	17	1	0.15	0.0089	0.0177	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SKNFI_AUTONOMIC_GANGLIA	0.15	1	0.0266	TRUE	15	36	8	26	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	2316	156	0	0.02	0.0089	0.0177	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SKNFI_AUTONOMIC_GANGLIA	0	0.02	0.0266	FALSE	6	50	7	115	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	AC026150.5--CHRNA7	1	1	AC026150.5	2136	chr15:30491534:+	CHRNA7	11820	chr15:32393506:+	ONLY_REF_SPLICE	NO	9	562	0.18	0	0.0089	0.0089	AC026150.5->chr15:30488239-30506743:+,CHRNA7->cholinergic_receptor_nicotinic_alpha_7_subunit,chr15:32322691-32464722:+	SKNFI_AUTONOMIC_GANGLIA	0	0.18	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	BZW2--ANKMY2	1	1	BZW2	1158	chr7:16685913:+	ANKMY2	23650	chr7:16676080:-	ONLY_REF_SPLICE	NO	34	39	0.06	0.05	0.0089	0.0089	LOCAL_INVERSION:+:-:[314],BZW2->basic_leucine_zipper_and_W2_domains_2,chr7:16685756-16746148:+,ANKMY2->ankyrin_repeat_and_MYND_domain_containing_2,chr7:16639401-16685442:-	SKNFI_AUTONOMIC_GANGLIA	0.05	0.06	0.0178	TRUE	0	0	0	1	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	CTC-786C10.1--GSE1	1	1	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	172	1	0.01	0.0089	0.0089	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKNFI_AUTONOMIC_GANGLIA	0.01	1	0.0178	FALSE	2	3	0	21	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	24	0	0.08	1	0.0089	0.0089	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKNFI_AUTONOMIC_GANGLIA	0.08	1	0.0178	FALSE	125	705	46	456	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	PCDH15--RP11-168O22.1	1	1	PCDH15	1318	chr10:57387385:-	RP11-168O22.1	70457	chr10:57007648:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0089	0.0089	GTEx_FI:{Adrenal_Gland=[count:35=pct:41.2],Pituitary=[count:2=pct:3.8],Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3]},PCDH15->chr10:55562531-57387702:-,protocadherin-related_15,RP11-168O22.1->chr10:57007515-57356993:-	SKNFI_AUTONOMIC_GANGLIA	1	1	0.0178	TRUE	24	53	0	5	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	211	1	0.01	0.0089	0.0089	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKNFI_AUTONOMIC_GANGLIA	0.01	1	0.0178	FALSE	64	13	3	59	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	STK11--DAZAP1	1	1	STK11	3716	chr19:1207202:+	DAZAP1	23111	chr19:1417499:+	ONLY_REF_SPLICE	YES	70	176	0.03	0.01	0.0089	0.0089	STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	SKNFI_AUTONOMIC_GANGLIA	0.01	0.03	0.0178	FALSE	1	0	0	2	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	VMP1--CLTC	1	1	VMP1	10238	chr17:57851246:+	CLTC	24482	chr17:57721637:+	ONLY_REF_SPLICE	NO	264	437	0.01	0	0.0089	0.0089	{Klijn_CCL:Lung=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[10882],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain	SKNFI_AUTONOMIC_GANGLIA	0	0.01	0.0178	FALSE	0	1	0	1	0	FALSE	ACH-000341
SKNFI_AUTONOMIC_GANGLIA	VPS45--IVNS1ABP	1	1	VPS45	11833	chr1:150065744:+	IVNS1ABP	27705	chr1:185274775:-	ONLY_REF_SPLICE	YES	93	146	0.02	0.01	0.0089	0.0089	VPS45->chr1:150039369-150117505:+,vacuolar_protein_sorting_45_homolog,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	SKNFI_AUTONOMIC_GANGLIA	0.01	0.02	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000341
VCAP_PROSTATE	USP10--ZDHHC7	597	106	USP10	1134	chr16:84733717:+	ZDHHC7	26839	chr16:85024241:-	ONLY_REF_SPLICE	YES	0	1	1	1	4.3839	0.7784	USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,ZDHHC7->Oncogene{Bushman},chr16:85007787-85045141:-,zinc_finger_DHHC-type_containing_7	VCAP_PROSTATE	1	1	5.1623	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TMPRSS2--ERG	522	3	TMPRSS2	3407	chr21:42880008:-	ERG	35606	chr21:39817544:-	ONLY_REF_SPLICE	YES	0	15	1	0.97	3.8331	0.022	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	VCAP_PROSTATE	0.97	1	3.8551	TRUE	0	117	4	2	116	TRUE	ACH-000115
VCAP_PROSTATE	PIK3C2A--TEAD1	318	70	PIK3C2A	1136	chr11:17229395:-	TEAD1	48550	chr11:12883797:+	ONLY_REF_SPLICE	YES	58	40	0.87	0.91	2.3351	0.514	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	VCAP_PROSTATE	0.87	0.91	2.8491	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	HJURP--EIF4E2	220	95	HJURP	10025	chr2:234749255:-	EIF4E2	19493	chr2:233421126:+	ONLY_REF_SPLICE	YES	120	19	0.72	0.94	1.6155	0.6976	chimerdb_pubmed{VCaP, VCaPMet},HJURP->Holliday_junction_recognition_protein,chr2:234742062-234763212:-,EIF4E2->chr2:233414762-233448354:+,eukaryotic_translation_initiation_factor_4E_family_member_2	VCAP_PROSTATE	0.72	0.94	2.3131	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	VWA2--PRKCH	184	146	VWA2	2373	chr10:116008524:+	PRKCH	34092	chr14:61909829:+	ONLY_REF_SPLICE	YES	73	81	0.82	0.8	1.3511	1.0721	VWA2->chr10:115999018-116051272:+,von_Willebrand_factor_A_domain_containing_2,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	VCAP_PROSTATE	0.8	0.82	2.4232	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TIMM23B--LINC00843	168	72	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.2336	0.5287	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	VCAP_PROSTATE	0.99	1	1.7623	TRUE	508	994	45	981	0	FALSE	ACH-000115
VCAP_PROSTATE	PTMA--PTMS	176	4	PTMA	6054	chr2:232576687:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	6315	610	0.03	0.23	1.2924	0.0294	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	VCAP_PROSTATE	0.03	0.23	1.3218	TRUE	0	0	0	16	0	FALSE	ACH-000115
VCAP_PROSTATE	LMAN2--AP3S1	131	59	LMAN2	1401	chr5:176778453:-	AP3S1	13494	chr5:115202367:+	ONLY_REF_SPLICE	YES	729	352	0.21	0.35	0.962	0.4332	chimerdb_pubmed{VCaP, VCaPMet},LMAN2->chr5:176758563-176778853:-,lectin,_mannose_binding_2,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	VCAP_PROSTATE	0.21	0.35	1.3952	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TMPRSS2--ERG	124	60	TMPRSS2	3538	chr21:42879877:-	ERG	35606	chr21:39817544:-	ONLY_REF_SPLICE	YES	122	15	0.6	0.92	0.9106	0.4406	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	VCAP_PROSTATE	0.6	0.92	1.3512	TRUE	0	117	4	2	116	TRUE	ACH-000115
VCAP_PROSTATE	C2orf42--DIRC2	108	96	C2orf42	1211	chr2:70475537:-	DIRC2	20687	chr3:122552164:+	ONLY_REF_SPLICE	YES	0	35	1	0.85	0.7931	0.7049	C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42,DIRC2->Oncogene{Bushman},chr3:122513642-122599986:+,disrupted_in_renal_carcinoma_2	VCAP_PROSTATE	0.85	1	1.498	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ZDHHC7--ABCB9	107	59	ZDHHC7	4762	chr16:85023910:-	ABCB9	23947	chr12:123444869:-	ONLY_REF_SPLICE	YES	8	87	0.95	0.66	0.7857	0.4332	ZDHHC7->Oncogene{Bushman},chr16:85007787-85045141:-,zinc_finger_DHHC-type_containing_7,ABCB9->ATP_binding_cassette_subfamily_B_member_9,chr12:123405498-123466196:-	VCAP_PROSTATE	0.66	0.95	1.2189	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	HSF1--RERE	107	49	HSF1	1277	chr8:145515556:+	RERE	18021	chr1:8716500:-	ONLY_REF_SPLICE	YES	380	114	0.29	0.58	0.7857	0.3598	HSF1->chr8:145515280-145538385:+,heat_shock_transcription_factor_1,RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-	VCAP_PROSTATE	0.29	0.58	1.1455	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	RC3H2--RGS3	93	87	RC3H2	14994	chr9:125622196:-	RGS3	56208	chr9:116299076:+	ONLY_REF_SPLICE	YES	154	187	0.54	0.49	0.6829	0.6389	chimerdb_pubmed{VCaP, VCaPMet},RC3H2->chr9:125606835-125667620:-,ring_finger_and_CCCH-type_domains_2,RGS3->Oncogene{Bushman},chr9:116207011-116360018:+,regulator_of_G-protein_signaling_3	VCAP_PROSTATE	0.49	0.54	1.3218	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ARMC6--SSX3	90	52	ARMC6	1356	chr19:19144739:+	SSX3	18996	chrX:48214704:-	ONLY_REF_SPLICE	YES	192	0	0.43	1	0.6609	0.3818	ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+,SSX3->chrX:48205863-48216142:-,synovial_sarcoma,_X_breakpoint_3	VCAP_PROSTATE	0.43	1	1.0427	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	RP11-299J3.8--CNNM4	95	0	RP11-299J3.8	1044	chr3:122135097:+	CNNM4	18383	chr2:97474298:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.6976	0	RP11-299J3.8->chr3:122135054-122162027:+,CNNM4->Oncogene{Bushman},chr2:97426639-97477628:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_4	VCAP_PROSTATE	1	1	0.6976	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TIMM23--RP11-464F9.1	89	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	411	12	0.19	0.89	0.6535	0.0587	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	VCAP_PROSTATE	0.19	0.89	0.7122	TRUE	519	3926	326	965	0	FALSE	ACH-000115
VCAP_PROSTATE	EZH1--ABCC4	87	1	EZH1	1043	chr17:40897029:-	ABCC4	44655	chr13:95816772:-	ONLY_REF_SPLICE	YES	0	258	1	0.25	0.6389	0.0073	EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,ABCC4->ATP_binding_cassette_subfamily_C_member_4,chr13:95672083-95953687:-	VCAP_PROSTATE	0.25	1	0.6462	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ADCK3--RNF187	80	14	ADCK3	10662	chr1:227128100:+	RNF187	27419	chr1:228676661:+	ONLY_REF_SPLICE	YES	13	94	0.88	0.5	0.5875	0.1028	ADCK3->aarF_domain_containing_kinase_3,chr1:227085237-227175246:+,RNF187->chr1:228674762-228683467:+,ring_finger_protein_187	VCAP_PROSTATE	0.5	0.88	0.6903	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	INPP4A--HJURP	68	46	INPP4A	28650	chr2:99193606:+	HJURP	50837	chr2:234746298:-	ONLY_REF_SPLICE	YES	48	111	0.7	0.51	0.4993	0.3378	chimerdb_pubmed{VCaP, VCaPMet},INPP4A->chr2:99061317-99210853:+,inositol_polyphosphate-4-phosphatase_type_I_A,HJURP->Holliday_junction_recognition_protein,chr2:234742062-234763212:-	VCAP_PROSTATE	0.51	0.7	0.8371	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	KANSL1--ARL17B	60	59	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	120	133	0.5	0.47	0.4406	0.4332	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	VCAP_PROSTATE	0.47	0.5	0.8738	TRUE	181	1564	124	196	0	FALSE	ACH-000115
VCAP_PROSTATE	C16orf70--ENKD1	58	62	C16orf70	1282	chr16:67144142:+	ENKD1	20466	chr16:67700168:-	ONLY_REF_SPLICE	YES	0	136	1	0.47	0.4259	0.4553	C16orf70->chr16:67143861-67182442:+,chromosome_16_open_reading_frame_70,ENKD1->chr16:67696848-67701168:-,enkurin_domain_containing_1	VCAP_PROSTATE	0.47	1	0.8812	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	C16orf70--ENKD1	42	123	C16orf70	1282	chr16:67144142:+	ENKD1	19638	chr16:67700996:-	INCL_NON_REF_SPLICE	YES	0	19	1	0.9	0.3084	0.9032	C16orf70->chr16:67143861-67182442:+,chromosome_16_open_reading_frame_70,ENKD1->chr16:67696848-67701168:-,enkurin_domain_containing_1	VCAP_PROSTATE	0.9	1	1.2116	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PDE4D--C5orf47	60	40	PDE4D	30827	chr5:58476421:-	C5orf47	59612	chr5:173412730:+	ONLY_REF_SPLICE	YES	18	0	0.85	1	0.4406	0.2937	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,C5orf47->chr5:173400782-173433143:+,chromosome_5_open_reading_frame_47	VCAP_PROSTATE	0.85	1	0.7343	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ZNF654--HMGB2	59	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4332	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	VCAP_PROSTATE	1	1	0.4332	TRUE	0	0	0	518	0	FALSE	ACH-000115
VCAP_PROSTATE	PIK3C2A--TEAD1	34	88	PIK3C2A	2205	chr11:17225854:-	TEAD1	48550	chr11:12883797:+	ONLY_REF_SPLICE	YES	112	40	0.52	0.75	0.2497	0.6462	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	VCAP_PROSTATE	0.52	0.75	0.8959	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PDGFA--WASH2P	33	45	PDGFA	7208	chr7:550446:-	WASH2P	19852	chr2:114355063:+	ONLY_REF_SPLICE	YES	79	51	0.5	0.6	0.2423	0.3304	PDGFA->OncocartaV1_panel,Oncogene{Bushman},chr7:536895-559933:-,platelet_derived_growth_factor_subunit_A,WASH2P->WAS_protein_family_homolog_2_pseudogene,chr2:114341664-114356655:+	VCAP_PROSTATE	0.5	0.6	0.5727	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ARMC6--SSX3	28	59	ARMC6	1439	chr19:19144822:+	SSX3	18996	chrX:48214704:-	ONLY_REF_SPLICE	YES	221	0	0.28	1	0.2056	0.4332	ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+,SSX3->chrX:48205863-48216142:-,synovial_sarcoma,_X_breakpoint_3	VCAP_PROSTATE	0.28	1	0.6388	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	CSNK1G3--CTC-338M12.6	27	44	CSNK1G3	9095	chr5:122924205:+	CTC-338M12.6	25826	chr5:180629588:+	ONLY_REF_SPLICE	YES	59	2	0.55	0.97	0.1983	0.3231	CSNK1G3->casein_kinase_1_gamma_3,chr5:122847793-122952739:+,CTC-338M12.6->chr5:180622496-180630103:+	VCAP_PROSTATE	0.55	0.97	0.5214	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PDE4D--FAM172A	28	35	PDE4D	19661	chr5:59064073:-	FAM172A	72510	chr5:92956835:-	ONLY_REF_SPLICE	YES	35	7	0.64	0.9	0.2056	0.257	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	VCAP_PROSTATE	0.64	0.9	0.4626	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TMPRSS2--ERG	36	3	TMPRSS2	3407	chr21:42880008:-	ERG	31121	chr21:39846044:-	ONLY_REF_SPLICE	YES	0	7	1	0.85	0.2644	0.022	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	VCAP_PROSTATE	0.85	1	0.2864	TRUE	0	61	2	1	61	TRUE	ACH-000115
VCAP_PROSTATE	NDUFAF2--MAST4	28	32	NDUFAF2	1254	chr5:60241209:+	MAST4	15109	chr5:66084498:+	ONLY_REF_SPLICE	YES	253	5	0.19	0.92	0.2056	0.235	NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+,MAST4->chr5:65892176-66465423:+,microtubule_associated_serine/threonine_kinase_family_member_4	VCAP_PROSTATE	0.19	0.92	0.4406	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	CALM3--MT-ND4L	24	41	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	4062	0	0.02	1	0.1762	0.3011	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	VCAP_PROSTATE	0.02	1	0.4773	FALSE	1	1	0	107	0	FALSE	ACH-000115
VCAP_PROSTATE	CSNK1G3--CTC-338M12.6	22	48	CSNK1G3	9095	chr5:122924205:+	CTC-338M12.6	24334	chr5:180627913:+	ONLY_REF_SPLICE	YES	59	0	0.54	1	0.1615	0.3525	CSNK1G3->casein_kinase_1_gamma_3,chr5:122847793-122952739:+,CTC-338M12.6->chr5:180622496-180630103:+	VCAP_PROSTATE	0.54	1	0.514	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	RC3H2--RGS3	10	90	RC3H2	15872	chr9:125621318:-	RGS3	56208	chr9:116299076:+	INCL_NON_REF_SPLICE	YES	160	187	0.38	0.35	0.0734	0.6609	chimerdb_pubmed{VCaP, VCaPMet},RC3H2->chr9:125606835-125667620:-,ring_finger_and_CCCH-type_domains_2,RGS3->Oncogene{Bushman},chr9:116207011-116360018:+,regulator_of_G-protein_signaling_3	VCAP_PROSTATE	0.35	0.38	0.7343	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PSMG1--UNK	26	23	PSMG1	6794	chr21:40549361:-	UNK	14759	chr17:73789524:+	ONLY_REF_SPLICE	YES	101	131	0.33	0.27	0.1909	0.1689	PSMG1->chr21:40546695-40555777:-,proteasome_assembly_chaperone_1,UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger	VCAP_PROSTATE	0.27	0.33	0.3598	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	VWA2--PRKCH	1	116	VWA2	1311	chr10:115999328:+	PRKCH	34092	chr14:61909829:+	ONLY_REF_SPLICE	YES	97	81	0.55	0.59	0.0073	0.8518	VWA2->chr10:115999018-116051272:+,von_Willebrand_factor_A_domain_containing_2,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	VCAP_PROSTATE	0.55	0.59	0.8591	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	USP10--ZDHHC7	2	111	USP10	2255	chr16:84738466:+	ZDHHC7	26839	chr16:85024241:-	ONLY_REF_SPLICE	YES	1	1	0.99	0.99	0.0147	0.8151	USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,ZDHHC7->Oncogene{Bushman},chr16:85007787-85045141:-,zinc_finger_DHHC-type_containing_7	VCAP_PROSTATE	0.99	0.99	0.8298	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	MT-TA--MT-TC	27	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1983	0.0367	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	VCAP_PROSTATE	1	1	0.235	FALSE	462	80	0	856	0	FALSE	ACH-000115
VCAP_PROSTATE	PIK3C2A--TEAD1	10	69	PIK3C2A	1136	chr11:17229395:-	TEAD1	48554	chr11:12883801:+	INCL_NON_REF_SPLICE	YES	58	40	0.58	0.66	0.0734	0.5067	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	VCAP_PROSTATE	0.58	0.66	0.5801	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ARMC6--SSX3	9	63	ARMC6	1664	chr19:19145047:+	SSX3	18996	chrX:48214704:-	ONLY_REF_SPLICE	YES	234	0	0.24	1	0.0661	0.4626	ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+,SSX3->chrX:48205863-48216142:-,synovial_sarcoma,_X_breakpoint_3	VCAP_PROSTATE	0.24	1	0.5287	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	JMY--DMGDH	21	13	JMY	3668	chr5:78573906:+	DMGDH	37279	chr5:78329231:-	ONLY_REF_SPLICE	YES	21	0	0.62	1	0.1542	0.0955	LOCAL_INVERSION:+:-:[151],JMY->chr5:78532012-78623038:+,junction_mediating_and_regulatory_protein,_p53_cofactor,DMGDH->chr5:78293438-78531861:-,dimethylglycine_dehydrogenase	VCAP_PROSTATE	0.62	1	0.2497	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	RANBP17--DOCK2	19	21	RANBP17	42989	chr5:170720985:+	DOCK2	77555	chr5:169267761:+	ONLY_REF_SPLICE	YES	4	0	0.91	1	0.1395	0.1542	RANBP17->Oncogene{Bushman},RAN_binding_protein_17,chr5:170288874-170727019:+,DOCK2->chr5:169064251-169510386:+,dedicator_of_cytokinesis_2	VCAP_PROSTATE	0.91	1	0.2937	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PTMA--PTMS	23	2	PTMA	6054	chr2:232576687:+	PTMS	13973	chr12:6879338:+	INCL_NON_REF_SPLICE	YES	6315	606	0	0.04	0.1689	0.0147	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	VCAP_PROSTATE	0	0.04	0.1836	TRUE	0	0	0	16	0	FALSE	ACH-000115
VCAP_PROSTATE	TMPRSS2--ERG	7	65	TMPRSS2	3538	chr21:42879877:-	ERG	31121	chr21:39846044:-	ONLY_REF_SPLICE	YES	122	7	0.37	0.91	0.0514	0.4773	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	VCAP_PROSTATE	0.37	0.91	0.5287	TRUE	0	61	2	1	61	TRUE	ACH-000115
VCAP_PROSTATE	TTC6--MIPOL1	19	16	TTC6	2242	chr14:38075947:+	MIPOL1	73587	chr14:37838722:+	ONLY_REF_SPLICE	YES	117	23	0.23	0.6	0.1395	0.1175	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	VCAP_PROSTATE	0.23	0.6	0.257	TRUE	0	3	0	4	3	TRUE	ACH-000115
VCAP_PROSTATE	PDE4D--FAM172A	19	12	PDE4D	13468	chr5:59284315:-	FAM172A	72510	chr5:92956835:-	ONLY_REF_SPLICE	YES	29	7	0.52	0.82	0.1395	0.0881	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	VCAP_PROSTATE	0.52	0.82	0.2276	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ARMC6--SSX3	4	64	ARMC6	2820	chr19:19148516:+	SSX3	18996	chrX:48214704:-	ONLY_REF_SPLICE	YES	240	0	0.22	1	0.0294	0.47	ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+,SSX3->chrX:48205863-48216142:-,synovial_sarcoma,_X_breakpoint_3	VCAP_PROSTATE	0.22	1	0.4994	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	CKB--MT-CO1	19	2	CKB	4320	chr14:103986129:-	MT-CO1	7451	chrM:5901:+	INCL_NON_REF_SPLICE	YES	513	0	0.04	1	0.1395	0.0147	CKB->chr14:103985996-103989448:-,creatine_kinase_B,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	VCAP_PROSTATE	0.04	1	0.1542	FALSE	0	0	0	3	0	FALSE	ACH-000115
VCAP_PROSTATE	ZNF57--DKFZP761J1410	15	16	ZNF57	1151	chr19:2901046:+	DKFZP761J1410	13623	chr19:11470283:+	ONLY_REF_SPLICE	YES	1	161	0.97	0.16	0.1101	0.1175	ZNF57->chr19:2900896-2918474:+,zinc_finger_protein_57,DKFZP761J1410->chr19:11466062-11476374:+	VCAP_PROSTATE	0.16	0.97	0.2276	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	CNOT6--S100Z	14	18	CNOT6	5731	chr5:179980471:+	S100Z	23187	chr5:76171129:+	ONLY_REF_SPLICE	YES	422	15	0.07	0.68	0.1028	0.1322	CNOT6->CCR4-NOT_transcription_complex_subunit_6,chr5:179921412-180005405:+,S100Z->S100_calcium_binding_protein_Z,chr5:76145826-76217475:+	VCAP_PROSTATE	0.07	0.68	0.235	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	NDUFAF2--MAST4	10	32	NDUFAF2	1300	chr5:60241255:+	MAST4	15109	chr5:66084498:+	ONLY_REF_SPLICE	YES	254	5	0.14	0.89	0.0734	0.235	NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+,MAST4->chr5:65892176-66465423:+,microtubule_associated_serine/threonine_kinase_family_member_4	VCAP_PROSTATE	0.14	0.89	0.3084	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TMPRSS2--ERG	2	63	TMPRSS2	4698	chr21:42878372:-	ERG	35606	chr21:39817544:-	ONLY_REF_SPLICE	NO	131	15	0.33	0.81	0.0147	0.4626	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	VCAP_PROSTATE	0.33	0.81	0.4773	TRUE	0	56	0	1	56	TRUE	ACH-000115
VCAP_PROSTATE	CNOT6--S100Z	9	34	CNOT6	5731	chr5:179980471:+	S100Z	20893	chr5:76145806:+	INCL_NON_REF_SPLICE	YES	422	0	0.09	1	0.0661	0.2497	CNOT6->CCR4-NOT_transcription_complex_subunit_6,chr5:179921412-180005405:+,S100Z->S100_calcium_binding_protein_Z,chr5:76145826-76217475:+	VCAP_PROSTATE	0.09	1	0.3158	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	RP5-1021I20.4--AC025918.2	16	0	RP5-1021I20.4	22554	chr14:74390225:+	AC025918.2	28608	chr15:59186176:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1175	0	RP5-1021I20.4->chr14:74318674-74398981:+,AC025918.2->chr15:59182166-59186281:+	VCAP_PROSTATE	1	1	0.1175	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	HSF1--RERE	3	51	HSF1	2983	chr8:145517262:+	RERE	18021	chr1:8716500:-	ONLY_REF_SPLICE	NO	387	114	0.12	0.32	0.022	0.3745	HSF1->chr8:145515280-145538385:+,heat_shock_transcription_factor_1,RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-	VCAP_PROSTATE	0.12	0.32	0.3965	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	USP10--ABCB9	6	39	USP10	1134	chr16:84733717:+	ABCB9	31191	chr12:123444869:-	ONLY_REF_SPLICE	YES	0	87	1	0.34	0.0441	0.2864	USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,ABCB9->ATP_binding_cassette_subfamily_B_member_9,chr12:123405498-123466196:-	VCAP_PROSTATE	0.34	1	0.3305	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	NPM1P24--SET	15	2	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	NO	37	3239	0.31	0.01	0.1101	0.0147	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	VCAP_PROSTATE	0.01	0.31	0.1248	FALSE	0	0	0	434	0	FALSE	ACH-000115
VCAP_PROSTATE	ZNF57--DKFZP761J1410	10	19	ZNF57	1151	chr19:2901046:+	DKFZP761J1410	13548	chr19:11470208:+	ONLY_REF_SPLICE	YES	1	160	0.97	0.15	0.0734	0.1395	ZNF57->chr19:2900896-2918474:+,zinc_finger_protein_57,DKFZP761J1410->chr19:11466062-11476374:+	VCAP_PROSTATE	0.15	0.97	0.2129	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	VWA2--PRKCH	1	52	VWA2	2373	chr10:116008524:+	PRKCH	35243	chr14:61912410:+	ONLY_REF_SPLICE	YES	73	147	0.42	0.27	0.0073	0.3818	VWA2->chr10:115999018-116051272:+,von_Willebrand_factor_A_domain_containing_2,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	VCAP_PROSTATE	0.27	0.42	0.3891	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	C2orf42--DIRC2	4	38	C2orf42	1211	chr2:70475537:-	DIRC2	21817	chr3:122564610:+	ONLY_REF_SPLICE	YES	0	67	1	0.39	0.0294	0.279	C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42,DIRC2->Oncogene{Bushman},chr3:122513642-122599986:+,disrupted_in_renal_carcinoma_2	VCAP_PROSTATE	0.39	1	0.3084	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	HSF1--RERE	1	49	HSF1	2022	chr8:145516301:+	RERE	18021	chr1:8716500:-	ONLY_REF_SPLICE	YES	392	114	0.11	0.3	0.0073	0.3598	HSF1->chr8:145515280-145538385:+,heat_shock_transcription_factor_1,RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-	VCAP_PROSTATE	0.11	0.3	0.3671	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PIK3C2A--TEAD1	2	45	PIK3C2A	1136	chr11:17229395:-	TEAD1	49615	chr11:12886233:+	ONLY_REF_SPLICE	YES	58	57	0.45	0.45	0.0147	0.3304	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	VCAP_PROSTATE	0.45	0.45	0.3451	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ADCK3--RNF187	5	32	ADCK3	10662	chr1:227128100:+	RNF187	25461	chr1:228674703:+	INCL_NON_REF_SPLICE	YES	13	0	0.74	1	0.0367	0.235	ADCK3->aarF_domain_containing_kinase_3,chr1:227085237-227175246:+,RNF187->chr1:228674762-228683467:+,ring_finger_protein_187	VCAP_PROSTATE	0.74	1	0.2717	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PIK3C2A--TEAD1	3	40	PIK3C2A	1136	chr11:17229395:-	TEAD1	49767	chr11:12886385:+	ONLY_REF_SPLICE	YES	58	83	0.43	0.34	0.022	0.2937	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	VCAP_PROSTATE	0.34	0.43	0.3157	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	CNNM4--PARD3B	11	7	CNNM4	8220	chr2:97474479:+	PARD3B	18014	chr2:205829875:+	ONLY_REF_SPLICE	YES	109	3	0.14	0.86	0.0808	0.0514	CNNM4->Oncogene{Bushman},chr2:97426639-97477628:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_4,PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta	VCAP_PROSTATE	0.14	0.86	0.1322	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PSMG1--UNK	5	29	PSMG1	6794	chr21:40549361:-	UNK	13629	chr17:73788394:+	ONLY_REF_SPLICE	YES	101	162	0.25	0.17	0.0367	0.213	PSMG1->chr21:40546695-40555777:-,proteasome_assembly_chaperone_1,UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger	VCAP_PROSTATE	0.17	0.25	0.2497	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	CSNK1G3--CTC-338M12.6	1	44	CSNK1G3	9095	chr5:122924205:+	CTC-338M12.6	25438	chr5:180629200:+	ONLY_REF_SPLICE	YES	59	1	0.43	0.98	0.0073	0.3231	CSNK1G3->casein_kinase_1_gamma_3,chr5:122847793-122952739:+,CTC-338M12.6->chr5:180622496-180630103:+	VCAP_PROSTATE	0.43	0.98	0.3304	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	NDUFAF2--CTC-458G6.4	11	4	NDUFAF2	5683	chr5:60394859:+	CTC-458G6.4	10079	chr5:92162034:+	INCL_NON_REF_SPLICE	YES	176	0	0.08	1	0.0808	0.0294	NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+,CTC-458G6.4->chr5:92161962-92179711:+	VCAP_PROSTATE	0.08	1	0.1102	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PDE4D--FAM172A	3	36	PDE4D	20832	chr5:58882155:-	FAM172A	72510	chr5:92956835:-	ONLY_REF_SPLICE	YES	40	7	0.49	0.85	0.022	0.2644	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	VCAP_PROSTATE	0.49	0.85	0.2864	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ZDHHC7--H3F3B	10	5	ZDHHC7	3430	chr16:85029528:-	H3F3B	20548	chr17:73775265:-	ONLY_REF_SPLICE	YES	1	1294	0.94	0.01	0.0734	0.0367	ZDHHC7->Oncogene{Bushman},chr16:85007787-85045141:-,zinc_finger_DHHC-type_containing_7,H3F3B->H3_histone,_family_3B_(H3.3B),chr17:73772515-73781974:-	VCAP_PROSTATE	0.01	0.94	0.1101	TRUE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	RC3H2--RGS3	6	20	RC3H2	13779	chr9:125627628:-	RGS3	56208	chr9:116299076:+	ONLY_REF_SPLICE	YES	173	187	0.13	0.12	0.0441	0.1469	chimerdb_pubmed{VCaP, VCaPMet},RC3H2->chr9:125606835-125667620:-,ring_finger_and_CCCH-type_domains_2,RGS3->Oncogene{Bushman},chr9:116207011-116360018:+,regulator_of_G-protein_signaling_3	VCAP_PROSTATE	0.12	0.13	0.191	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	CALM3--MT-ND4L	5	21	CALM3	7150	chr19:47112652:+	MT-ND4L	11633	chrM:10554:+	INCL_NON_REF_SPLICE	YES	3825	0	0.01	1	0.0367	0.1542	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	VCAP_PROSTATE	0.01	1	0.1909	FALSE	1	1	0	107	0	FALSE	ACH-000115
VCAP_PROSTATE	CSNK1G3--CTC-338M12.6	3	28	CSNK1G3	8737	chr5:122923847:+	CTC-338M12.6	25826	chr5:180629588:+	ONLY_REF_SPLICE	YES	87	2	0.26	0.94	0.022	0.2056	CSNK1G3->casein_kinase_1_gamma_3,chr5:122847793-122952739:+,CTC-338M12.6->chr5:180622496-180630103:+	VCAP_PROSTATE	0.26	0.94	0.2276	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	DSCR3--TTC3	9	3	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	172	411	0.07	0.03	0.0661	0.022	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	VCAP_PROSTATE	0.03	0.07	0.0881	TRUE	0	9	0	44	1	FALSE	ACH-000115
VCAP_PROSTATE	SLMAP--ANO10	6	14	SLMAP	7721	chr3:57835543:+	ANO10	44181	chr3:43679275:-	ONLY_REF_SPLICE	YES	77	3	0.21	0.87	0.0441	0.1028	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,ANO10->anoctamin_10,chr3:43396351-43733086:-	VCAP_PROSTATE	0.21	0.87	0.1469	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ARHGAP23--F13A1	8	5	ARHGAP23	16504	chr17:36638919:+	F13A1	36351	chr6:6251162:-	ONLY_REF_SPLICE	YES	2	2	0.87	0.87	0.0587	0.0367	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,F13A1->chr6:6144318-6321246:-,coagulation_factor_XIII_A_chain	VCAP_PROSTATE	0.87	0.87	0.0954	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PIK3C2A--TEAD1	1	32	PIK3C2A	1136	chr11:17229395:-	TEAD1	52288	chr11:12901255:+	ONLY_REF_SPLICE	YES	58	114	0.36	0.22	0.0073	0.235	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+	VCAP_PROSTATE	0.22	0.36	0.2423	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	NRIP1--AF127936.7	8	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.67	1	0.0587	0.0147	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	VCAP_PROSTATE	0.67	1	0.0734	FALSE	292	1546	117	613	0	FALSE	ACH-000115
VCAP_PROSTATE	TTC6--MIPOL1	6	8	TTC6	1162	chr14:38065213:+	MIPOL1	73587	chr14:37838722:+	ONLY_REF_SPLICE	YES	85	23	0.14	0.38	0.0441	0.0587	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	VCAP_PROSTATE	0.14	0.38	0.1028	TRUE	0	3	0	4	2	TRUE	ACH-000115
VCAP_PROSTATE	LMAN2--AP3S1	1	27	LMAN2	1401	chr5:176778453:-	AP3S1	14586	chr5:115205714:+	ONLY_REF_SPLICE	YES	729	343	0.04	0.08	0.0073	0.1983	chimerdb_pubmed{VCaP, VCaPMet},LMAN2->chr5:176758563-176778853:-,lectin,_mannose_binding_2,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	VCAP_PROSTATE	0.04	0.08	0.2056	TRUE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	MT-TA--MT-TC	6	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0.0514	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	VCAP_PROSTATE	1	1	0.0955	FALSE	462	80	0	856	0	FALSE	ACH-000115
VCAP_PROSTATE	NREP--DOCK2	6	7	NREP	6917	chr5:111091467:-	DOCK2	71471	chr5:169477260:+	ONLY_REF_SPLICE	YES	49	14	0.21	0.48	0.0441	0.0514	NREP->chr5:110998318-111333161:-,neuronal_regeneration_related_protein,DOCK2->chr5:169064251-169510386:+,dedicator_of_cytokinesis_2	VCAP_PROSTATE	0.21	0.48	0.0955	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	NRIP1--AF127936.7	6	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	53	0	0.2	1	0.0441	0.0514	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	VCAP_PROSTATE	0.2	1	0.0955	FALSE	164	806	69	479	0	FALSE	ACH-000115
VCAP_PROSTATE	DCDC2--ELOVL2-AS1	7	2	DCDC2	2650	chr6:24353797:-	ELOVL2-AS1	23103	chr6:11077922:+	ONLY_REF_SPLICE	YES	62	3	0.13	0.75	0.0514	0.0147	DCDC2->chr6:24171984-24358280:-,doublecortin_domain_containing_2,ELOVL2-AS1->ELOVL2_antisense_RNA_1,chr6:11043757-11078459:+	VCAP_PROSTATE	0.13	0.75	0.0661	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	NPM1P24--SET	7	2	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	37	2953	0.2	0	0.0514	0.0147	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	VCAP_PROSTATE	0	0.2	0.0661	FALSE	0	0	0	434	0	FALSE	ACH-000115
VCAP_PROSTATE	NPM1P24--SET	7	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	37	2700	0.18	0	0.0514	0.0073	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	VCAP_PROSTATE	0	0.18	0.0587	FALSE	0	0	0	434	0	FALSE	ACH-000115
VCAP_PROSTATE	RASA1--C5orf30	6	5	RASA1	2103	chr5:86564807:+	C5orf30	34584	chr5:102601609:+	ONLY_REF_SPLICE	YES	62	346	0.15	0.03	0.0441	0.0367	RASA1->Oncogene{Bushman},RAS_p21_protein_activator_1,chr5:86563705-86687748:+,C5orf30->chr5:102594403-102614361:+,chromosome_5_open_reading_frame_30	VCAP_PROSTATE	0.03	0.15	0.0808	TRUE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	REV3L--RPL28	7	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0514	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	VCAP_PROSTATE	1	1	0.0514	TRUE	22	156	2	142	0	FALSE	ACH-000115
VCAP_PROSTATE	JMY--DMGDH	5	7	JMY	3668	chr5:78573906:+	DMGDH	37847	chr5:78328663:-	ONLY_REF_SPLICE	YES	21	3	0.36	0.8	0.0367	0.0514	LOCAL_INVERSION:+:-:[151],JMY->chr5:78532012-78623038:+,junction_mediating_and_regulatory_protein,_p53_cofactor,DMGDH->chr5:78293438-78531861:-,dimethylglycine_dehydrogenase	VCAP_PROSTATE	0.36	0.8	0.0881	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	C15orf57--CBX3	5	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	92	94	0.11	0.1	0.0367	0.0441	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	VCAP_PROSTATE	0.1	0.11	0.0808	TRUE	267	562	48	632	0	FALSE	ACH-000115
VCAP_PROSTATE	JMY--DMGDH	4	10	JMY	3668	chr5:78573906:+	DMGDH	37362	chr5:78329148:-	INCL_NON_REF_SPLICE	YES	21	0	0.4	1	0.0294	0.0734	LOCAL_INVERSION:+:-:[151],JMY->chr5:78532012-78623038:+,junction_mediating_and_regulatory_protein,_p53_cofactor,DMGDH->chr5:78293438-78531861:-,dimethylglycine_dehydrogenase	VCAP_PROSTATE	0.4	1	0.1028	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	RP11-123O10.4--GRIP1	6	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0441	0.0147	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	VCAP_PROSTATE	0.89	1	0.0588	FALSE	416	2512	207	587	0	FALSE	ACH-000115
VCAP_PROSTATE	SCARB1--UBC	6	2	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	862	95	0.01	0.08	0.0441	0.0147	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	VCAP_PROSTATE	0.01	0.08	0.0588	FALSE	55	66	6	101	0	FALSE	ACH-000115
VCAP_PROSTATE	TTC6--MIPOL1	4	10	TTC6	2242	chr14:38075947:+	MIPOL1	77335	chr14:37892060:+	ONLY_REF_SPLICE	YES	117	33	0.11	0.3	0.0294	0.0734	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	VCAP_PROSTATE	0.11	0.3	0.1028	TRUE	0	4	0	4	2	TRUE	ACH-000115
VCAP_PROSTATE	CNOT6--S100Z	1	21	CNOT6	5731	chr5:179980471:+	S100Z	22068	chr5:76165991:+	ONLY_REF_SPLICE	YES	422	0	0.05	1	0.0073	0.1542	CNOT6->CCR4-NOT_transcription_complex_subunit_6,chr5:179921412-180005405:+,S100Z->S100_calcium_binding_protein_Z,chr5:76145826-76217475:+	VCAP_PROSTATE	0.05	1	0.1615	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TMPRSS2--ERG	1	21	TMPRSS2	3538	chr21:42879877:-	ERG	36824	chr21:39795483:-	ONLY_REF_SPLICE	YES	122	1230	0.15	0.02	0.0073	0.1542	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	VCAP_PROSTATE	0.02	0.15	0.1615	TRUE	0	59	1	1	24	TRUE	ACH-000115
VCAP_PROSTATE	C15orf57--CBX3	5	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	92	95	0.09	0.09	0.0367	0.0294	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	VCAP_PROSTATE	0.09	0.09	0.0661	TRUE	267	562	48	632	0	FALSE	ACH-000115
VCAP_PROSTATE	PTMA--PTMS	5	4	PTMA	6530	chr2:232577163:+	PTMS	13740	chr12:6879105:+	INCL_NON_REF_SPLICE	NO	5901	509	0	0.02	0.0367	0.0294	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	VCAP_PROSTATE	0	0.02	0.0661	FALSE	0	0	0	16	0	FALSE	ACH-000115
VCAP_PROSTATE	RP11-214N9.1--ATP6V1C2	5	4	RP11-214N9.1	1694	chr2:9696721:+	ATP6V1C2	8184	chr2:10894107:+	INCL_NON_REF_SPLICE	YES	1	8	0.9	0.53	0.0367	0.0294	RP11-214N9.1->chr2:9696028-9696904:+,ATP6V1C2->ATPase_H+_transporting_V1_subunit_C2,chr2:10861775-10925236:+	VCAP_PROSTATE	0.53	0.9	0.0661	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	SLMAP--ANO10	1	19	SLMAP	7721	chr3:57835543:+	ANO10	42881	chr3:43680575:-	ONLY_REF_SPLICE	YES	77	0	0.21	1	0.0073	0.1395	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,ANO10->anoctamin_10,chr3:43396351-43733086:-	VCAP_PROSTATE	0.21	1	0.1468	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	MAN2A1--ANKRD31	5	2	MAN2A1	5759	chr5:109065214:+	ANKRD31	38855	chr5:74526460:-	ONLY_REF_SPLICE	YES	19	0	0.27	1	0.0367	0.0147	MAN2A1->chr5:109025067-109205326:+,mannosidase_alpha_class_2A_member_1,ANKRD31->ankyrin_repeat_domain_31,chr5:74364100-74532703:-	VCAP_PROSTATE	0.27	1	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	EBF1--GPR98	3	9	EBF1	3067	chr5:158523982:-	GPR98	124033	chr5:90261232:+	ONLY_REF_SPLICE	YES	4	18	0.75	0.4	0.022	0.0661	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,GPR98->chr5:89825161-90460038:+	VCAP_PROSTATE	0.4	0.75	0.0881	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TMPRSS2--ERG	5	1	TMPRSS2	3407	chr21:42880008:-	ERG	36824	chr21:39795483:-	ONLY_REF_SPLICE	YES	0	1230	1	0	0.0367	0.0073	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	VCAP_PROSTATE	0	1	0.044	FALSE	0	59	1	1	24	FALSE	ACH-000115
VCAP_PROSTATE	NDUFAF2--MAST4	3	8	NDUFAF2	1254	chr5:60241209:+	MAST4	19772	chr5:66195779:+	ONLY_REF_SPLICE	YES	253	2	0.04	0.85	0.022	0.0587	NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+,MAST4->chr5:65892176-66465423:+,microtubule_associated_serine/threonine_kinase_family_member_4	VCAP_PROSTATE	0.04	0.85	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	RASA1--PPIP5K2	3	8	RASA1	2103	chr5:86564807:+	PPIP5K2	66849	chr5:102537223:+	ONLY_REF_SPLICE	YES	62	77	0.15	0.12	0.022	0.0587	RASA1->Oncogene{Bushman},RAS_p21_protein_activator_1,chr5:86563705-86687748:+,PPIP5K2->chr5:102455853-102548500:+,diphosphoinositol_pentakisphosphate_kinase_2	VCAP_PROSTATE	0.12	0.15	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	C2orf42--DIRC2	1	15	C2orf42	1211	chr2:70475537:-	DIRC2	22926	chr3:122575154:+	ONLY_REF_SPLICE	NO	0	84	1	0.16	0.0073	0.1101	C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42,DIRC2->Oncogene{Bushman},chr3:122513642-122599986:+,disrupted_in_renal_carcinoma_2	VCAP_PROSTATE	0.16	1	0.1174	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	CNOT6--S100Z	2	11	CNOT6	4645	chr5:179977117:+	S100Z	23187	chr5:76171129:+	ONLY_REF_SPLICE	YES	502	15	0.03	0.46	0.0147	0.0808	CNOT6->CCR4-NOT_transcription_complex_subunit_6,chr5:179921412-180005405:+,S100Z->S100_calcium_binding_protein_Z,chr5:76145826-76217475:+	VCAP_PROSTATE	0.03	0.46	0.0955	TRUE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	MT-TA--MT-TC	4	3	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0294	0.022	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	VCAP_PROSTATE	1	1	0.0514	FALSE	462	80	0	856	0	FALSE	ACH-000115
VCAP_PROSTATE	EBF1--RP11-373N22.3	4	2	EBF1	3698	chr5:158523351:-	RP11-373N22.3	29110	chr5:147670558:-	ONLY_REF_SPLICE	YES	6	0	0.5	1	0.0294	0.0147	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,RP11-373N22.3->chr5:147647870-147763346:-	VCAP_PROSTATE	0.5	1	0.0441	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	EBF2--PLXNC1	3	6	EBF2	5962	chr8:25890601:-	PLXNC1	53538	chr12:94688262:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0.0441	EBF2->chr8:25699246-25902913:-,early_B-cell_factor_2,PLXNC1->chr12:94542499-94701451:+,plexin_C1	VCAP_PROSTATE	1	1	0.0661	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ANP32B--APP	4	1	ANP32B	8121	chr9:100773592:+	APP	24365	chr21:27394316:-	INCL_NON_REF_SPLICE	NO	1097	2200	0	0	0.0294	0.0073	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	VCAP_PROSTATE	0	0	0.0367	FALSE	0	0	0	7	0	FALSE	ACH-000115
VCAP_PROSTATE	ANP32B--APP	4	1	ANP32B	8117	chr9:100773588:+	APP	24379	chr21:27394302:-	INCL_NON_REF_SPLICE	YES	1048	2446	0	0	0.0294	0.0073	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	VCAP_PROSTATE	0	0	0.0367	FALSE	0	0	0	7	0	FALSE	ACH-000115
VCAP_PROSTATE	ANP32B--APP	4	1	ANP32B	8124	chr9:100773595:+	APP	24347	chr21:27394334:-	INCL_NON_REF_SPLICE	NO	1143	2372	0	0	0.0294	0.0073	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	VCAP_PROSTATE	0	0	0.0367	FALSE	0	0	0	7	0	FALSE	ACH-000115
VCAP_PROSTATE	KANSL1--ARL17B	1	13	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	122	133	0.1	0.1	0.0073	0.0955	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	VCAP_PROSTATE	0.1	0.1	0.1028	TRUE	105	90	7	93	0	FALSE	ACH-000115
VCAP_PROSTATE	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0294	0.0073	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	VCAP_PROSTATE	1	1	0.0367	FALSE	462	80	0	856	0	FALSE	ACH-000115
VCAP_PROSTATE	MAEA--CTBP1	4	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	VCAP_PROSTATE	1	1	0.0294	TRUE	3	14	2	43	0	FALSE	ACH-000115
VCAP_PROSTATE	MT-CO1--RUVBL2	4	0	MT-CO1	1608	chrM:6511:+	RUVBL2	11425	chr19:49507635:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0294	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,RUVBL2->Oncogene{Bushman},RuvB_like_AAA_ATPase_2,chr19:49496705-49519252:+	VCAP_PROSTATE	1	1	0.0294	FALSE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	NRIP1--AF127936.7	3	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	27	0	0.21	1	0.022	0.0294	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	VCAP_PROSTATE	0.21	1	0.0514	FALSE	125	705	46	456	0	FALSE	ACH-000115
VCAP_PROSTATE	PDE4D--FAM172A	1	12	PDE4D	18262	chr5:59092886:-	FAM172A	72510	chr5:92956835:-	ONLY_REF_SPLICE	YES	7	7	0.65	0.65	0.0073	0.0881	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	VCAP_PROSTATE	0.65	0.65	0.0954	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PPIP5K2--CTC-340A15.2	3	4	PPIP5K2	3088	chr5:102465407:+	CTC-340A15.2	77019	chr5:164598384:+	ONLY_REF_SPLICE	YES	59	1	0.11	0.88	0.022	0.0294	PPIP5K2->chr5:102455853-102548500:+,diphosphoinositol_pentakisphosphate_kinase_2,CTC-340A15.2->chr5:163723702-164598649:+	VCAP_PROSTATE	0.11	0.88	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	CNOT6--S100Z	1	11	CNOT6	4645	chr5:179977117:+	S100Z	22068	chr5:76165991:+	ONLY_REF_SPLICE	YES	502	0	0.02	1	0.0073	0.0808	CNOT6->CCR4-NOT_transcription_complex_subunit_6,chr5:179921412-180005405:+,S100Z->S100_calcium_binding_protein_Z,chr5:76145826-76217475:+	VCAP_PROSTATE	0.02	1	0.0881	TRUE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	PSMG1--UNK	3	3	PSMG1	6794	chr21:40549361:-	UNK	17327	chr17:73805841:+	ONLY_REF_SPLICE	YES	101	69	0.06	0.08	0.022	0.022	PSMG1->chr21:40546695-40555777:-,proteasome_assembly_chaperone_1,UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger	VCAP_PROSTATE	0.06	0.08	0.044	TRUE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	NPM1P24--SET	3	2	NPM1P24	1524	chr10:74677769:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	NO	37	3239	0.12	0	0.022	0.0147	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	VCAP_PROSTATE	0	0.12	0.0367	FALSE	0	0	0	434	0	FALSE	ACH-000115
VCAP_PROSTATE	NPM1P24--SET	3	2	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	37	2980	0.12	0	0.022	0.0147	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	VCAP_PROSTATE	0	0.12	0.0367	FALSE	0	0	0	434	0	FALSE	ACH-000115
VCAP_PROSTATE	PDE4D--C5orf47	2	6	PDE4D	30827	chr5:58476421:-	C5orf47	62166	chr5:173425156:+	ONLY_REF_SPLICE	YES	18	0	0.31	1	0.0147	0.0441	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,C5orf47->chr5:173400782-173433143:+,chromosome_5_open_reading_frame_47	VCAP_PROSTATE	0.31	1	0.0588	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ZNF57--DKFZP761J1410	2	6	ZNF57	1151	chr19:2901046:+	DKFZP761J1410	14973	chr19:11471893:+	ONLY_REF_SPLICE	YES	1	120	0.89	0.06	0.0147	0.0441	ZNF57->chr19:2900896-2918474:+,zinc_finger_protein_57,DKFZP761J1410->chr19:11466062-11476374:+	VCAP_PROSTATE	0.06	0.89	0.0588	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ANP32B--APP	3	1	ANP32B	8121	chr9:100773592:+	APP	24347	chr21:27394334:-	INCL_NON_REF_SPLICE	NO	1097	2372	0	0	0.022	0.0073	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	VCAP_PROSTATE	0	0	0.0293	FALSE	0	0	0	7	0	FALSE	ACH-000115
VCAP_PROSTATE	EBF1--GPR98	1	9	EBF1	3698	chr5:158523351:-	GPR98	124033	chr5:90261232:+	ONLY_REF_SPLICE	YES	6	18	0.62	0.36	0.0073	0.0661	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,GPR98->chr5:89825161-90460038:+	VCAP_PROSTATE	0.36	0.62	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ZBTB20--LSAMP	3	1	ZBTB20	19209	chr3:114412375:-	LSAMP	49993	chr3:115805403:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.022	0.0073	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1|PRAD:1],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	VCAP_PROSTATE	0.5	1	0.0293	TRUE	0	1	0	1	1	TRUE	ACH-000115
VCAP_PROSTATE	BRMS1--SREBF1	3	0	BRMS1	5704	chr11:66106210:-	SREBF1	15655	chr17:17721020:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.022	0	BRMS1->Oncogene{Bushman},breast_cancer_metastasis_suppressor_1,chr11:66104804-66112596:-,SREBF1->chr17:17713713-17740325:-,sterol_regulatory_element_binding_transcription_factor_1	VCAP_PROSTATE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	C16orf70--ENKD1	2	4	C16orf70	1282	chr16:67144142:+	ENKD1	23175	chr16:67697459:-	ONLY_REF_SPLICE	YES	0	144	1	0.04	0.0147	0.0294	C16orf70->chr16:67143861-67182442:+,chromosome_16_open_reading_frame_70,ENKD1->chr16:67696848-67701168:-,enkurin_domain_containing_1	VCAP_PROSTATE	0.04	1	0.0441	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	NDUFAF2--MAST4	1	8	NDUFAF2	1300	chr5:60241255:+	MAST4	19772	chr5:66195779:+	ONLY_REF_SPLICE	NO	254	2	0.03	0.82	0.0073	0.0587	NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+,MAST4->chr5:65892176-66465423:+,microtubule_associated_serine/threonine_kinase_family_member_4	VCAP_PROSTATE	0.03	0.82	0.066	TRUE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	NUFIP2--MPI	3	0	NUFIP2	2387	chr17:27614684:-	MPI	20903	chr15:75185479:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.022	0	NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2,MPI->chr15:75182346-75191798:+,mannose_phosphate_isomerase	VCAP_PROSTATE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PDIA4--PPIA	3	0	PDIA4	6431	chr7:148709341:-	PPIA	15239	chr7:44836309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.022	0	PDIA4->chr7:148700154-148725733:-,protein_disulfide_isomerase_family_A_member_4,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	VCAP_PROSTATE	1	1	0.022	TRUE	0	0	0	2	0	TRUE	ACH-000115
VCAP_PROSTATE	PARVA--PLEKHA7	2	2	PARVA	17309	chr11:12539258:+	PLEKHA7	28771	chr11:16892729:-	ONLY_REF_SPLICE	YES	106	54	0.04	0.07	0.0147	0.0147	PARVA->chr11:12398732-12552348:+,parvin_alpha,PLEKHA7->chr11:16799842-17035990:-,pleckstrin_homology_domain_containing_A7	VCAP_PROSTATE	0.04	0.07	0.0294	TRUE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	PDE4D--C5orf47	2	2	PDE4D	30827	chr5:58476421:-	C5orf47	64352	chr5:173428199:+	ONLY_REF_SPLICE	YES	18	2	0.18	0.67	0.0147	0.0147	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,C5orf47->chr5:173400782-173433143:+,chromosome_5_open_reading_frame_47	VCAP_PROSTATE	0.18	0.67	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	TTC6--MIPOL1	2	2	TTC6	1162	chr14:38065213:+	MIPOL1	90133	chr14:38016110:+	ONLY_REF_SPLICE	YES	85	54	0.04	0.07	0.0147	0.0147	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	VCAP_PROSTATE	0.04	0.07	0.0294	TRUE	0	2	0	2	1	FALSE	ACH-000115
VCAP_PROSTATE	ZNF57--DKFZP761J1410	2	2	ZNF57	1151	chr19:2901046:+	DKFZP761J1410	17422	chr19:11474389:+	ONLY_REF_SPLICE	YES	1	95	0.8	0.04	0.0147	0.0147	ZNF57->chr19:2900896-2918474:+,zinc_finger_protein_57,DKFZP761J1410->chr19:11466062-11476374:+	VCAP_PROSTATE	0.04	0.8	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ANO10--SLMAP	2	1	ANO10	1078	chr3:43733009:-	SLMAP	39608	chr3:57843460:+	ONLY_REF_SPLICE	YES	0	79	1	0.04	0.0147	0.0073	ANO10->anoctamin_10,chr3:43396351-43733086:-,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	VCAP_PROSTATE	0.04	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	CDKAL1--RP3-348I23.2	2	1	CDKAL1	7465	chr6:20758874:+	RP3-348I23.2	25525	chr6:20756999:-	ONLY_REF_SPLICE	YES	62	0	0.05	1	0.0147	0.0073	NEIGHBORS_OVERLAP:+:-:[44591],CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+,RP3-348I23.2->chr6:20756334-20800925:-	VCAP_PROSTATE	0.05	1	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	PTMA--PTMS	2	1	PTMA	6593	chr2:232577226:+	PTMS	14193	chr12:6879558:+	ONLY_REF_SPLICE	YES	6284	713	0	0	0.0147	0.0073	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	VCAP_PROSTATE	0	0	0.022	FALSE	0	0	0	16	0	FALSE	ACH-000115
VCAP_PROSTATE	PTMA--PTMS	2	1	PTMA	2857	chr2:232573461:+	PTMS	13404	chr12:6878769:+	ONLY_REF_SPLICE	YES	7256	165	0	0.02	0.0147	0.0073	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	VCAP_PROSTATE	0	0.02	0.022	FALSE	0	0	0	2	0	FALSE	ACH-000115
VCAP_PROSTATE	RC3H2--RGS3	2	1	RC3H2	9887	chr9:125639750:-	RGS3	56208	chr9:116299076:+	ONLY_REF_SPLICE	YES	247	187	0.01	0.02	0.0147	0.0073	chimerdb_pubmed{VCaP, VCaPMet},RC3H2->chr9:125606835-125667620:-,ring_finger_and_CCCH-type_domains_2,RGS3->Oncogene{Bushman},chr9:116207011-116360018:+,regulator_of_G-protein_signaling_3	VCAP_PROSTATE	0.01	0.02	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	AAK1--AGAP1-IT1	2	0	AAK1	6979	chr2:69769655:-	AGAP1-IT1	40771	chr2:236415597:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	AAK1->AP2_associated_kinase_1,chr2:69688532-69901481:-,AGAP1-IT1->AGAP1_intronic_transcript_1,chr2:236414395-236416210:+	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ARHGAP26--RP11-155G15.2	2	0	ARHGAP26	18023	chr5:142311690:+	RP11-155G15.2	49198	chr5:96767448:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+,RP11-155G15.2->chr5:96519303-96772921:+	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	ATXN7L1--NEDD4L	2	0	ATXN7L1	1793	chr7:105516258:-	NEDD4L	58342	chr18:56008270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	ATXN7L1->ataxin_7_like_1,chr7:105245514-105517050:-,NEDD4L->chr18:55711599-56068772:+,neural_precursor_cell_expressed,_developmentally_down-regulated_4-like,_E3_ubiquitin_protein_ligase	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	BSG--SET	2	0	BSG	2405	chr19:572701:+	SET	18125	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	C19orf25--DAZAP1	2	0	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	VCAP_PROSTATE	1	1	0.0147	TRUE	6	7	1	24	0	FALSE	ACH-000115
VCAP_PROSTATE	CTD-2001C12.1--GNAS	2	0	CTD-2001C12.1	1102	chr5:99870865:-	GNAS	26550	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	CTD-2001C12.1->chr5:99785458-99870966:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	GEMIN4--ABR	2	0	GEMIN4	2685	chr17:655373:-	ABR	25250	chr17:1003975:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	GEMIN4->chr17:647654-657239:-,gem_nuclear_organelle_associated_protein_4,ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	VCAP_PROSTATE	1	1	0.0147	TRUE	1	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	HP1BP3--AMACR	2	0	HP1BP3	1129	chr1:21113688:-	AMACR	23620	chr5:34006004:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,AMACR->alpha-methylacyl-CoA_racemase,chr5:33986283-34008220:-	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	MTERFD1--ERAP2	2	0	MTERFD1	1110	chr8:97273729:-	ERAP2	33450	chr5:96251392:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	MTERFD1->chr8:97251626-97273838:-,ERAP2->chr5:96211643-96255420:+,endoplasmic_reticulum_aminopeptidase_2	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	NFE2L1--FOLH1B	2	0	NFE2L1	8029	chr17:46134864:+	FOLH1B	18030	chr11:89385664:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,FOLH1B->chr11:89371683-89431886:+,folate_hydrolase_1B	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PPP2R1A--ZNF577	2	0	PPP2R1A	1136	chr19:52693427:+	ZNF577	24217	chr19:52384130:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	PPP2R1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:52693292-52730687:+,protein_phosphatase_2_regulatory_subunit_A,_alpha,ZNF577->chr19:52359055-52394203:-,zinc_finger_protein_577	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	RCN2--SETX	2	0	RCN2	3045	chr15:77228063:+	SETX	16623	chr9:135224822:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	RCN2->chr15:77223960-77242601:+,reticulocalbin_2,SETX->chr9:135136743-135230372:-,senataxin	VCAP_PROSTATE	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	VCAP_PROSTATE	1	1	0.0147	TRUE	0	1	0	17	0	TRUE	ACH-000115
VCAP_PROSTATE	EBF1--GPR98	1	3	EBF1	1417	chr5:158526353:-	GPR98	124033	chr5:90261232:+	ONLY_REF_SPLICE	NO	14	18	0.22	0.18	0.0073	0.022	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,GPR98->chr5:89825161-90460038:+	VCAP_PROSTATE	0.18	0.22	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	PSMG1--UNK	1	3	PSMG1	6794	chr21:40549361:-	UNK	16515	chr17:73805029:+	ONLY_REF_SPLICE	YES	101	66	0.04	0.06	0.0073	0.022	PSMG1->chr21:40546695-40555777:-,proteasome_assembly_chaperone_1,UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger	VCAP_PROSTATE	0.04	0.06	0.0293	TRUE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	TTC6--MIPOL1	1	3	TTC6	2242	chr14:38075947:+	MIPOL1	90133	chr14:38016110:+	ONLY_REF_SPLICE	YES	117	54	0.03	0.07	0.0073	0.022	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	VCAP_PROSTATE	0.03	0.07	0.0293	TRUE	0	9	0	2	8	TRUE	ACH-000115
VCAP_PROSTATE	CHCHD3--EXOC4	1	2	CHCHD3	5725	chr7:132709306:-	EXOC4	26235	chr7:133002038:+	ONLY_REF_SPLICE	NO	553	162	0.01	0.02	0.0073	0.0147	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	VCAP_PROSTATE	0.01	0.02	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	CHCHD3--EXOC4	1	2	CHCHD3	7933	chr7:132659929:-	EXOC4	23855	chr7:132973676:+	ONLY_REF_SPLICE	YES	573	218	0.01	0.01	0.0073	0.0147	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	VCAP_PROSTATE	0.01	0.01	0.022	FALSE	0	0	0	2	0	FALSE	ACH-000115
VCAP_PROSTATE	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	53	9	0.05	0.25	0.0073	0.0147	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	VCAP_PROSTATE	0.05	0.25	0.022	FALSE	8	57	1	47	0	FALSE	ACH-000115
VCAP_PROSTATE	ADCK3--RNF187	1	1	ADCK3	9854	chr1:227127292:+	RNF187	27419	chr1:228676661:+	ONLY_REF_SPLICE	NO	3	94	0.4	0.02	0.0073	0.0073	ADCK3->aarF_domain_containing_kinase_3,chr1:227085237-227175246:+,RNF187->chr1:228674762-228683467:+,ring_finger_protein_187	VCAP_PROSTATE	0.02	0.4	0.0146	TRUE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	C10orf118--CASP7	1	1	C10orf118	1206	chr10:115933774:-	CASP7	29354	chr10:115457253:+	ONLY_REF_SPLICE	YES	295	107	0.01	0.02	0.0073	0.0073	C10orf118->chr10:115880621-115933979:-,CASP7->caspase_7,chr10:115438942-115490662:+	VCAP_PROSTATE	0.01	0.02	0.0146	FALSE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	CARKD--KDM4B	1	1	CARKD	5546	chr13:111279894:+	KDM4B	20591	chr19:5047487:+	ONLY_REF_SPLICE	YES	1503	119	0	0.02	0.0073	0.0073	CARKD->chr13:111267881-111292340:+,KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B	VCAP_PROSTATE	0	0.02	0.0146	FALSE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	CARS2--CARKD	1	1	CARS2	9934	chr13:111340068:-	CARKD	32525	chr13:111274563:+	ONLY_REF_SPLICE	YES	1052	284	0	0.01	0.0073	0.0073	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Left_Ventricle=1},LOCAL_INVERSION:-:+:[1419],CARS2->chr13:111293759-111365950:-,cysteinyl-tRNA_synthetase_2,_mitochondrial_(putative),CARKD->chr13:111267881-111292340:+	VCAP_PROSTATE	0	0.01	0.0146	FALSE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	CTNNA1--MATR3	1	1	CTNNA1	17161	chr5:138163407:+	MATR3	58734	chr5:138650364:+	ONLY_REF_SPLICE	YES	1282	827	0	0	0.0073	0.0073	GTEx&tcga_normals:1/3694=0.03%,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,MATR3->chr5:138609441-138667360:+,matrin_3	VCAP_PROSTATE	0	0	0.0146	FALSE	0	0	0	6	0	FALSE	ACH-000115
VCAP_PROSTATE	EBF1--GPR98	1	1	EBF1	3698	chr5:158523351:-	GPR98	126329	chr5:90368264:+	ONLY_REF_SPLICE	NO	6	27	0.25	0.07	0.0073	0.0073	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,GPR98->chr5:89825161-90460038:+	VCAP_PROSTATE	0.07	0.25	0.0146	TRUE	0	0	0	1	0	TRUE	ACH-000115
VCAP_PROSTATE	EBF1--GPR98	1	1	EBF1	1417	chr5:158526353:-	GPR98	126329	chr5:90368264:+	ONLY_REF_SPLICE	YES	14	27	0.12	0.07	0.0073	0.0073	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,GPR98->chr5:89825161-90460038:+	VCAP_PROSTATE	0.07	0.12	0.0146	TRUE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	FAM13A--BMPR1B	1	1	FAM13A	5416	chr4:89941611:-	BMPR1B	49067	chr4:96025559:+	ONLY_REF_SPLICE	YES	131	82	0.02	0.02	0.0073	0.0073	FAM13A->chr4:89647106-90032549:-,family_with_sequence_similarity_13_member_A,BMPR1B->bone_morphogenetic_protein_receptor_type_1B,chr4:95679119-96079599:+	VCAP_PROSTATE	0.02	0.02	0.0146	TRUE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	FASN--P4HB	1	1	FASN	4519	chr17:80051474:-	P4HB	24087	chr17:79817263:-	ONLY_REF_SPLICE	NO	2574	3490	0	0	0.0073	0.0073	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	VCAP_PROSTATE	0	0	0.0146	FALSE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	NOC4L--FBRSL1	1	1	NOC4L	5448	chr12:132633440:+	FBRSL1	23658	chr12:133144067:+	ONLY_REF_SPLICE	YES	88	267	0.02	0.01	0.0073	0.0073	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	VCAP_PROSTATE	0.01	0.02	0.0146	FALSE	16	9	0	6	0	FALSE	ACH-000115
VCAP_PROSTATE	RBM47--CACNG4	1	1	RBM47	3565	chr4:40546439:-	CACNG4	23923	chr17:65014305:+	ONLY_REF_SPLICE	YES	355	41	0.01	0.05	0.0073	0.0073	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,CACNG4->calcium_voltage-gated_channel_auxiliary_subunit_gamma_4,chr17:64961026-65029514:+	VCAP_PROSTATE	0.01	0.05	0.0146	FALSE	0	0	0	1	0	FALSE	ACH-000115
VCAP_PROSTATE	YES1--AR	1	1	YES1	1433	chr18:812115:-	AR	24729	chrX:66863098:+	ONLY_REF_SPLICE	YES	349	1278	0.01	0	0.0073	0.0073	YES1->Oncogene{Bushman},YES_proto-oncogene_1,_Src_family_tyrosine_kinase,chr18:721588-812547:-,AR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},androgen_receptor,chrX:66764465-66950461:+	VCAP_PROSTATE	0	0.01	0.0146	FALSE	0	0	0	1	0	FALSE	ACH-000115
CAL851_BREAST	NUP153--PXMP4	154	30	NUP153	1149	chr6:17706508:-	PXMP4	28105	chr20:32302542:-	ONLY_REF_SPLICE	YES	31	31	0.86	0.86	1.3315	0.2594	NUP153->chr6:17615269-17706656:-,nucleoporin_153kDa,PXMP4->chr20:32294512-32308125:-,peroxisomal_membrane_protein_4	CAL851_BREAST	0.86	0.86	1.5909	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	MT-TA--MT-TC	151	17	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3056	0.147	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL851_BREAST	1	1	1.4526	FALSE	462	80	0	856	0	FALSE	ACH-000857
CAL851_BREAST	MT-TA--MT-TN	139	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2018	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL851_BREAST	1	1	1.2018	FALSE	369	2501	205	193	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	130	11	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.124	0.0951	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	1	1	1.2191	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	C17orf70--NPLOC4	108	31	C17orf70	2796	chr17:79519192:-	NPLOC4	44018	chr17:79526442:-	ONLY_REF_SPLICE	YES	18	143	0.89	0.49	0.9338	0.268	LOCAL_REARRANGEMENT:-:[2926],C17orf70->chr17:79506911-79520987:-,NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-	CAL851_BREAST	0.49	0.89	1.2018	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	23	288	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	52	2	0.86	0.99	0.1989	2.4901	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.86	0.99	2.689	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	80	37	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	827	0	0.12	1	0.6917	0.3199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.12	1	1.0116	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	13	298	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	40	3	0.89	0.99	0.1124	2.5766	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.89	0.99	2.689	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	8	312	MT-ND4	2041	chrM:11800:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	17589	3	0.02	0.99	0.0692	2.6976	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.02	0.99	2.7668	FALSE	344	826	44	305	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	6	302	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	53	0	0.85	1	0.0519	2.6111	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.85	1	2.663	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	8	290	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	30	1	0.91	1	0.0692	2.5074	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.91	1	2.5766	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	5	301	MT-ND4	1222	chrM:10981:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	52	0	0.85	1	0.0432	2.6025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.85	1	2.6457	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	5	299	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	52	0	0.85	1	0.0432	2.5852	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.85	1	2.6284	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	4	302	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	51	0	0.86	1	0.0346	2.6111	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.86	1	2.6457	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	4	302	MT-ND4	1213	chrM:10972:+	MT-ND4L	5376	chrM:10467:+	INCL_NON_REF_SPLICE	YES	58	0	0.84	1	0.0346	2.6111	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.84	1	2.6457	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	4	300	MT-ND4	1195	chrM:10954:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	54	0	0.85	1	0.0346	2.5938	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.85	1	2.6284	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	5	296	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	52	3	0.85	0.99	0.0432	2.5593	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.85	0.99	2.6025	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	3	303	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	575	3	0.35	0.99	0.0259	2.6198	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.35	0.99	2.6457	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	4	298	MT-ND4	1531	chrM:11290:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	854	2	0.26	0.99	0.0346	2.5766	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.26	0.99	2.6112	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	3	301	MT-ND4	1754	chrM:11513:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	YES	6055	2	0.05	0.99	0.0259	2.6025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.05	0.99	2.6284	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	3	297	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	39	1	0.88	1	0.0259	2.5679	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.88	1	2.5938	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	AFG3L1P--MC1R	69	31	AFG3L1P	1180	chr16:90039173:+	MC1R	28390	chr16:89984284:+	ONLY_REF_SPLICE	YES	24	2	0.81	0.98	0.5966	0.268	LOCAL_REARRANGEMENT:+:[51609],AFG3L1P->AFG3_like_matrix_AAA_peptidase_subunit_1,_pseudogene,chr16:90038994-90068569:+,MC1R->chr16:89978527-89987385:+,melanocortin_1_receptor	CAL851_BREAST	0.81	0.98	0.8646	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	3	292	MT-ND4	1112	chrM:10871:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	29	0	0.91	1	0.0259	2.5247	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.91	1	2.5506	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	3	289	MT-ND4	1220	chrM:10979:+	MT-ND4L	5536	chrM:10627:+	INCL_NON_REF_SPLICE	YES	52	1	0.85	1	0.0259	2.4987	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.85	1	2.5246	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	3	286	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	37	2	0.89	0.99	0.0259	2.4728	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.89	0.99	2.4987	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	3	280	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	29	2	0.91	0.99	0.0259	2.4209	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.91	0.99	2.4468	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	6	250	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	25	2	0.91	0.99	0.0519	2.1615	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.91	0.99	2.2134	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	12	224	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	22	3	0.91	0.99	0.1038	1.9367	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.91	0.99	2.0405	FALSE	344	821	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	21	186	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	59	1	0.78	1	0.1816	1.6082	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.78	1	1.7898	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	3	248	MT-ND4	1081	chrM:10840:+	MT-ND4L	5526	chrM:10617:+	INCL_NON_REF_SPLICE	YES	23	2	0.92	0.99	0.0259	2.1442	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.92	0.99	2.1701	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	3	244	MT-ND4	1079	chrM:10838:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	23	3	0.91	0.99	0.0259	2.1097	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.91	0.99	2.1356	FALSE	344	821	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	58	11	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5015	0.0951	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	1	1	0.5966	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	8	193	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	29	1	0.87	1	0.0692	1.6687	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.87	1	1.7379	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	4	185	MT-ND4	1164	chrM:10923:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	45	1	0.81	0.99	0.0346	1.5995	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.81	0.99	1.6341	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	3	186	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	31	1	0.86	0.99	0.0259	1.6082	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.86	0.99	1.6341	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	3	185	MT-ND4	1514	chrM:11273:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	687	1	0.21	0.99	0.0259	1.5995	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.21	0.99	1.6254	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	4	175	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	89	1	0.67	0.99	0.0346	1.5131	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.67	0.99	1.5477	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	4	175	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	100	1	0.64	0.99	0.0346	1.5131	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.64	0.99	1.5477	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	3	163	MT-ND4	1818	chrM:11577:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	9773	1	0.02	0.99	0.0259	1.4093	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.02	0.99	1.4352	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	3	157	MT-ND4	1170	chrM:10929:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	51	1	0.76	0.99	0.0259	1.3574	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.76	0.99	1.3833	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	8	135	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	45	1	0.76	0.99	0.0692	1.1672	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.76	0.99	1.2364	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	27	56	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	16047	0	0.01	1	0.2334	0.4842	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.01	1	0.7176	FALSE	328	800	43	304	0	FALSE	ACH-000857
CAL851_BREAST	MT-TA--MT-TN	41	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3545	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL851_BREAST	1	1	0.3545	FALSE	369	2501	205	193	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	34	21	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	9	0	0.86	1	0.294	0.1816	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	0.86	1	0.4756	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	21	72	MT-ND4	1195	chrM:10954:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	YES	54	0	0.63	1	0.1816	0.6225	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.63	1	0.8041	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	29	37	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	50	0	0.57	1	0.2507	0.3199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.57	1	0.5706	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	4	134	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	61	1	0.69	0.99	0.0346	1.1586	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.69	0.99	1.1932	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-TA--MT-TN	16	81	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1383	0.7003	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL851_BREAST	1	1	0.8386	FALSE	369	2501	205	193	0	FALSE	ACH-000857
CAL851_BREAST	TIMM23B--LINC00843	34	8	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.294	0.0692	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAL851_BREAST	1	1	0.3632	TRUE	508	994	45	981	0	FALSE	ACH-000857
CAL851_BREAST	MT-TA--MT-TN	29	22	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2507	0.1902	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL851_BREAST	1	1	0.4409	FALSE	369	2501	205	193	0	FALSE	ACH-000857
CAL851_BREAST	MT-TA--MT-TN	17	67	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.147	0.5793	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL851_BREAST	1	1	0.7263	FALSE	369	2501	205	193	0	FALSE	ACH-000857
CAL851_BREAST	MT-TA--MT-TN	20	49	MT-TA	1054	chrM:5602:-	MT-TN	4092	chrM:5707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1729	0.4237	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL851_BREAST	1	1	0.5966	FALSE	369	2501	205	193	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	5	93	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	9	3	0.92	0.97	0.0432	0.8041	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.92	0.97	0.8473	FALSE	344	821	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	7	85	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	22	1	0.81	0.99	0.0605	0.7349	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.81	0.99	0.7954	FALSE	344	821	44	306	0	FALSE	ACH-000857
CAL851_BREAST	RP11-114H23.1--RP11-114H23.2	27	5	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.2334	0.0432	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CAL851_BREAST	0.94	1	0.2766	FALSE	81	155	12	160	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	5	87	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	8	2	0.92	0.98	0.0432	0.7522	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.92	0.98	0.7954	FALSE	344	821	44	306	0	FALSE	ACH-000857
CAL851_BREAST	KATNB1--NLRC5	23	7	KATNB1	3685	chr16:57775729:+	NLRC5	54908	chr16:57101648:+	ONLY_REF_SPLICE	YES	13	7	0.7	0.81	0.1989	0.0605	KATNB1->chr16:57769642-57791162:+,katanin_regulatory_subunit_B1,NLRC5->NLR_family,_CARD_domain_containing_5,chr16:57023397-57117443:+	CAL851_BREAST	0.7	0.81	0.2594	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	17	31	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	52	0	0.48	1	0.147	0.268	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.48	1	0.415	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	11	55	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	734	0	0.08	1	0.0951	0.4755	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.08	1	0.5706	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND3--MT-ATP8	24	2	MT-ND3	1222	chrM:10280:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1447	25	0.02	0.51	0.2075	0.0173	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL851_BREAST	0.02	0.51	0.2248	FALSE	351	233	23	137	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	4	79	MT-ND4	1117	chrM:10876:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	32	0	0.72	1	0.0346	0.683	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.72	1	0.7176	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	9	53	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	74	0	0.46	1	0.0778	0.4582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.46	1	0.536	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	TIMM23--RP11-464F9.1	22	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1902	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAL851_BREAST	1	1	0.1902	TRUE	519	3926	326	965	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	4	71	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	7	2	0.91	0.97	0.0346	0.6139	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.91	0.97	0.6485	FALSE	344	821	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	14	30	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.121	0.2594	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	1	1	0.3804	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	8	53	MT-ND4	1201	chrM:10960:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	61	0	0.5	1	0.0692	0.4582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.5	1	0.5274	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	11	41	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	10	0	0.84	1	0.0951	0.3545	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	0.84	1	0.4496	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MT-TA--MT-TC	21	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1816	0.0086	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL851_BREAST	1	1	0.1902	FALSE	462	80	0	856	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	8	52	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	54	0	0.53	1	0.0692	0.4496	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.53	1	0.5188	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	7	52	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	45	0	0.57	1	0.0605	0.4496	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.57	1	0.5101	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	9	42	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	13	0	0.8	1	0.0778	0.3631	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	0.8	1	0.4409	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	10	37	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	59	0	0.44	1	0.0865	0.3199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.44	1	0.4064	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	5	55	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	6995	0	0.01	1	0.0432	0.4755	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.01	1	0.5187	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	9	39	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	10	0	0.83	1	0.0778	0.3372	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	0.83	1	0.415	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	9	37	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	45	0	0.51	1	0.0778	0.3199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.51	1	0.3977	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	5	53	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	54	0	0.52	1	0.0432	0.4582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.52	1	0.5014	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-TA--MT-TN	10	32	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0865	0.2767	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL851_BREAST	1	1	0.3632	FALSE	369	2501	205	193	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	6	46	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	17	1	0.75	0.98	0.0519	0.3977	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.75	0.98	0.4496	FALSE	344	821	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-TA--MT-TN	5	49	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0.4237	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL851_BREAST	1	1	0.4669	FALSE	369	2501	205	193	0	FALSE	ACH-000857
CAL851_BREAST	NIPA2--POLA1	17	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.147	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	CAL851_BREAST	1	1	0.147	TRUE	46	1352	75	139	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	7	37	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	75	0	0.37	1	0.0605	0.3199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.37	1	0.3804	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	3	53	MT-ND4	1281	chrM:11040:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	75	0	0.43	1	0.0259	0.4582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.43	1	0.4841	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-TA--MT-TC	12	16	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1038	0.1383	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL851_BREAST	1	1	0.2421	FALSE	462	80	0	856	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	3	50	MT-ND6	1315	chrM:14359:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	280	0	0.16	1	0.0259	0.4323	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	0.16	1	0.4582	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	6	37	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	7412	0	0.01	1	0.0519	0.3199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.01	1	0.3718	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	6	37	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	422	0	0.09	1	0.0519	0.3199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.09	1	0.3718	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	C17orf70--NPLOC4	9	24	C17orf70	2768	chr17:79519220:-	NPLOC4	44018	chr17:79526442:-	INCL_NON_REF_SPLICE	YES	15	143	0.69	0.19	0.0778	0.2075	LOCAL_REARRANGEMENT:-:[2926],C17orf70->chr17:79506911-79520987:-,NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-	CAL851_BREAST	0.19	0.69	0.2853	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	3	47	MT-ND4	1131	chrM:10890:+	MT-ND4L	5657	chrM:10748:+	INCL_NON_REF_SPLICE	YES	38	0	0.57	1	0.0259	0.4064	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.57	1	0.4323	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	5	37	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	75	0	0.36	1	0.0432	0.3199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.36	1	0.3631	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	4	41	MT-ND6	1153	chrM:14521:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	6	0	0.88	1	0.0346	0.3545	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	0.88	1	0.3891	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	C17orf70--NPLOC4	14	0	C17orf70	1888	chr17:79520100:-	NPLOC4	44018	chr17:79526442:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.121	0	LOCAL_REARRANGEMENT:-:[2926],C17orf70->chr17:79506911-79520987:-,NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-	CAL851_BREAST	1	1	0.121	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	9	19	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	79	0	0.26	1	0.0778	0.1643	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.26	1	0.2421	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-TA--MT-TN	3	43	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0259	0.3718	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL851_BREAST	1	1	0.3977	FALSE	369	2501	205	193	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND3--MT-ATP8	13	2	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	98	25	0.13	0.38	0.1124	0.0173	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL851_BREAST	0.13	0.38	0.1297	FALSE	351	233	23	137	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	4	37	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	37	0	0.53	1	0.0346	0.3199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.53	1	0.3545	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND3--MT-ATP8	13	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1124	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL851_BREAST	1	1	0.1124	FALSE	351	233	23	137	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	3	40	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	52	0	0.45	1	0.0259	0.3458	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.45	1	0.3717	FALSE	344	826	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-TA--MT-TN	12	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1038	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL851_BREAST	1	1	0.1038	FALSE	369	2501	205	193	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	3	35	MT-ND4	1278	chrM:11037:+	MT-ND4L	5663	chrM:10754:+	INCL_NON_REF_SPLICE	YES	71	0	0.35	1	0.0259	0.3026	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.35	1	0.3285	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	4	27	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	292	0	0.1	1	0.0346	0.2334	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	0.1	1	0.268	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MT-TA--MT-TC	6	19	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0.1643	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL851_BREAST	1	1	0.2162	FALSE	462	80	0	856	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	4	25	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0346	0.2162	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	0.94	1	0.2508	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MT-TA--MT-TN	10	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0865	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL851_BREAST	1	1	0.0865	FALSE	369	2501	205	193	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	5	19	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	79	0	0.23	1	0.0432	0.1643	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.23	1	0.2075	FALSE	344	827	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	5	19	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0.1643	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	1	1	0.2075	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	4	21	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	335	0	0.07	1	0.0346	0.1816	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	0.07	1	0.2162	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	9	1	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0778	0.0086	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	1	1	0.0864	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MT-TA--MT-TN	9	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0778	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL851_BREAST	1	1	0.0778	FALSE	369	2501	205	193	0	FALSE	ACH-000857
CAL851_BREAST	RP11-96H19.1--RP11-446N19.1	8	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0692	0.0173	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL851_BREAST	0.77	1	0.0865	FALSE	515	4851	409	746	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	8	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0692	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	1	1	0.0692	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	6	6	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0.0519	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	1	1	0.1038	FALSE	344	821	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	4	13	MT-ND4	1004	chrM:10763:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.89	0.0346	0.1124	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.89	1	0.147	FALSE	344	821	44	306	0	FALSE	ACH-000857
CAL851_BREAST	RP11-123O10.4--GRIP1	7	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0605	0.0086	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAL851_BREAST	1	1	0.0691	FALSE	416	2512	207	587	0	FALSE	ACH-000857
CAL851_BREAST	CCDC91--AP005135.2	6	4	CCDC91	21147	chr12:28544344:+	AP005135.2	37363	chr11:134931841:-	ONLY_REF_SPLICE	YES	37	0	0.21	1	0.0519	0.0346	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,AP005135.2->chr11:134931675-134945793:-	CAL851_BREAST	0.21	1	0.0865	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	7	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0605	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	1	1	0.0605	FALSE	344	821	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-TA--MT-TN	7	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0605	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL851_BREAST	1	1	0.0605	FALSE	369	2501	205	193	0	FALSE	ACH-000857
CAL851_BREAST	NUP153--E2F1	7	0	NUP153	1149	chr6:17706508:-	E2F1	28281	chr20:32268222:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0605	0	NUP153->chr6:17615269-17706656:-,nucleoporin_153kDa,E2F1->E2F_transcription_factor_1,Oncogene{Bushman},chr20:32263489-32274210:-	CAL851_BREAST	1	1	0.0605	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	MT-TA--MT-TC	3	15	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0259	0.1297	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL851_BREAST	1	1	0.1556	FALSE	462	80	0	856	0	FALSE	ACH-000857
CAL851_BREAST	RP11-114H23.1--RP11-114H23.2	6	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0519	0.0259	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CAL851_BREAST	0.82	1	0.0778	FALSE	81	155	12	160	0	FALSE	ACH-000857
CAL851_BREAST	RP11-114H23.1--RP11-114H23.2	6	3	RP11-114H23.1	1242	chr12:76377554:-	RP11-114H23.2	12403	chr12:76088755:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0519	0.0259	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CAL851_BREAST	0.9	1	0.0778	FALSE	81	155	12	160	0	FALSE	ACH-000857
CAL851_BREAST	APP--MT-CO3	4	10	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	1202	16446	0.01	0	0.0346	0.0865	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAL851_BREAST	0	0.01	0.1211	FALSE	0	0	0	26	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	6	2	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	4	1	0.67	0.89	0.0519	0.0173	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.67	0.89	0.0692	FALSE	344	821	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	6	1	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	1	1	0.88	0.88	0.0519	0.0086	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.88	0.88	0.0605	FALSE	344	821	44	306	0	FALSE	ACH-000857
CAL851_BREAST	NRIP1--AF127936.7	5	5	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	2	0.91	0.83	0.0432	0.0432	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL851_BREAST	0.83	0.91	0.0864	FALSE	292	1546	117	613	0	FALSE	ACH-000857
CAL851_BREAST	APP--MT-CO3	3	12	APP	11652	chr21:27394197:-	MT-CO3	32390	chrM:9421:+	INCL_NON_REF_SPLICE	YES	1309	16797	0.01	0	0.0259	0.1038	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAL851_BREAST	0	0.01	0.1297	FALSE	0	0	0	26	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	4	8	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.0346	0.0692	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	0.8	1	0.1038	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MYH9--RP5-921G16.1	5	4	MYH9	1212	chr22:36783852:-	RP5-921G16.1	47900	chr7:123992870:+	ONLY_REF_SPLICE	YES	223	2	0.04	0.82	0.0432	0.0346	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,RP5-921G16.1->chr7:123672259-124035172:+	CAL851_BREAST	0.04	0.82	0.0778	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	APP--MT-CO3	3	11	APP	11650	chr21:27394199:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	1276	16446	0.01	0	0.0259	0.0951	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAL851_BREAST	0	0.01	0.121	FALSE	0	0	0	26	0	FALSE	ACH-000857
CAL851_BREAST	FBXL20--GSDMB	5	3	FBXL20	3225	chr17:37499433:-	GSDMB	25304	chr17:38073574:-	ONLY_REF_SPLICE	YES	6	10	0.57	0.44	0.0432	0.0259	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	CAL851_BREAST	0.44	0.57	0.0691	TRUE	0	1	0	1	1	TRUE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	3	11	MT-ND6	1149	chrM:14525:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	6	0	0.7	1	0.0259	0.0951	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	0.7	1	0.121	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	CYP39A1--FAM83B	5	1	CYP39A1	7044	chr6:46598700:-	FAM83B	24118	chr6:54804504:+	ONLY_REF_SPLICE	YES	18	21	0.25	0.22	0.0432	0.0086	CYP39A1->chr6:46517541-46620523:-,cytochrome_P450_family_39_subfamily_A_member_1,FAM83B->chr6:54711569-54806820:+,family_with_sequence_similarity_83_member_B	CAL851_BREAST	0.22	0.25	0.0518	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	RP4-565E6.1--HYDIN	5	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0432	0.0086	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	CAL851_BREAST	0.86	1	0.0518	TRUE	456	1387	91	133	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND3--MT-ATP8	5	0	MT-ND3	1094	chrM:10152:+	MT-ATP8	4474	chrM:8493:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL851_BREAST	1	1	0.0432	FALSE	351	233	23	137	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	5	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	1	1	0.0432	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND4--MT-ND4L	4	2	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	18	0	0.25	1	0.0346	0.0173	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL851_BREAST	0.25	1	0.0519	FALSE	344	821	44	306	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	4	2	MT-ND6	1046	chrM:14628:-	MT-TE	4575	chrM:14693:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0.0173	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	1	1	0.0519	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	3	6	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	9	0	0.5	1	0.0259	0.0519	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	0.5	1	0.0778	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	4	1	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0.0086	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	1	1	0.0432	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	RP11-114H23.1--RP11-114H23.2	3	5	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	11291	chr12:76092598:-	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0259	0.0432	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CAL851_BREAST	0.8	1	0.0691	FALSE	0	0	0	2	0	FALSE	ACH-000857
CAL851_BREAST	CTD-2337A12.1--CAST	4	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	CAL851_BREAST	1	1	0.0346	TRUE	347	1186	183	220	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND3--MT-ATP8	4	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL851_BREAST	1	1	0.0346	FALSE	351	233	23	137	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND3--MT-ATP8	3	3	MT-ND3	1290	chrM:10348:+	MT-ATP8	4418	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0259	0.0259	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL851_BREAST	1	1	0.0518	FALSE	351	233	23	137	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	3	3	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0259	0.0259	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	1	1	0.0518	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	MT-ND6--MT-TE	3	2	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0259	0.0173	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL851_BREAST	1	1	0.0432	FALSE	499	1288	110	792	0	FALSE	ACH-000857
CAL851_BREAST	CCDC91--AP005135.2	2	4	CCDC91	22332	chr12:28565871:+	AP005135.2	37363	chr11:134931841:-	ONLY_REF_SPLICE	YES	40	0	0.13	1	0.0173	0.0346	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,AP005135.2->chr11:134931675-134945793:-	CAL851_BREAST	0.13	1	0.0519	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	FBXL20--GSDMB	2	3	FBXL20	3225	chr17:37499433:-	GSDMB	25295	chr17:38073583:-	ONLY_REF_SPLICE	NO	6	9	0.45	0.36	0.0173	0.0259	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	CAL851_BREAST	0.36	0.45	0.0432	TRUE	0	1	0	1	1	TRUE	ACH-000857
CAL851_BREAST	CD59--FBXO3	2	2	CD59	8041	chr11:33738916:-	FBXO3	25208	chr11:33780147:-	ONLY_REF_SPLICE	YES	1414	30	0	0.12	0.0173	0.0173	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[4494],CD59->CD59_molecule,chr11:33719807-33757991:-,FBXO3->F-box_protein_3,chr11:33762485-33796089:-	CAL851_BREAST	0	0.12	0.0346	FALSE	0	1	0	1	1	FALSE	ACH-000857
CAL851_BREAST	FAAH2--RP11-622K12.1	2	2	FAAH2	5862	chrX:57367823:+	RP11-622K12.1	19488	chrX:56843753:+	ONLY_REF_SPLICE	YES	26	58	0.13	0.06	0.0173	0.0173	FAAH2->chrX:57313139-57515629:+,fatty_acid_amide_hydrolase_2,RP11-622K12.1->chrX:56755692-56844813:+	CAL851_BREAST	0.06	0.13	0.0346	TRUE	0	0	0	1	0	FALSE	ACH-000857
CAL851_BREAST	FUBP1--RP11-22M7.2	2	1	FUBP1	11740	chr1:78422257:-	RP11-22M7.2	25424	chr1:216260064:+	ONLY_REF_SPLICE	YES	175	0	0.02	1	0.0173	0.0086	FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,RP11-22M7.2->chr1:216245807-216260259:+	CAL851_BREAST	0.02	1	0.0259	TRUE	0	0	0	1	0	FALSE	ACH-000857
CAL851_BREAST	NRIP1--AF127936.7	1	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	15	2	0.29	0.75	0.0086	0.0432	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL851_BREAST	0.29	0.75	0.0518	FALSE	125	705	46	456	0	FALSE	ACH-000857
CAL851_BREAST	RP11-114H23.1--RP11-114H23.2	1	5	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0086	0.0432	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CAL851_BREAST	0.75	1	0.0518	FALSE	5	9	0	20	0	FALSE	ACH-000857
CAL851_BREAST	AGRN--DVL1	2	0	AGRN	11949	chr1:982337:+	DVL1	29506	chr1:1274033:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	AGRN->agrin,chr1:955503-991496:+,DVL1->chr1:1270656-1284730:-,dishevelled_segment_polarity_protein_1	CAL851_BREAST	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	ANKRD29--RP11-520D19.2	2	0	ANKRD29	6609	chr18:21218813:-	RP11-520D19.2	21557	chr3:81337375:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	ANKRD29->ankyrin_repeat_domain_29,chr18:21178890-21242849:-,RP11-520D19.2->chr3:81295730-81346496:-	CAL851_BREAST	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	CBX1--CCT3	2	0	CBX1	1254	chr17:46178630:-	CCT3	18715	chr1:156303434:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	CBX1->chr17:46147414-46178883:-,chromobox_1,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	CAL851_BREAST	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	CREG1--MRPL24	2	0	CREG1	1380	chr1:167522625:-	MRPL24	14227	chr1:156708230:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	CREG1->cellular_repressor_of_E1A_stimulated_genes_1,chr1:167498914-167523004:-,MRPL24->chr1:156707095-156711382:-,mitochondrial_ribosomal_protein_L24	CAL851_BREAST	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	CYP39A1--FAM83B	2	0	CYP39A1	2517	chr6:46609900:-	FAM83B	24118	chr6:54804504:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	CYP39A1->chr6:46517541-46620523:-,cytochrome_P450_family_39_subfamily_A_member_1,FAM83B->chr6:54711569-54806820:+,family_with_sequence_similarity_83_member_B	CAL851_BREAST	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	NF1--LRRC37BP1	1	4	NF1	60081	chr17:29683600:+	LRRC37BP1	77615	chr17:28956698:+	ONLY_REF_SPLICE	YES	15	0	0.25	1	0.0086	0.0346	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,LRRC37BP1->chr17:28956698-28964482:+,leucine_rich_repeat_containing_37B_pseudogene_1	CAL851_BREAST	0.25	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	NRP1--PARD3	2	0	NRP1	4012	chr10:33619636:-	PARD3	64705	chr10:34420511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Kidney=[count:1=pct:7.1],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Kidney_-_Cortex=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Lung=1},NRP1->chr10:33466420-33625190:-,neuropilin_1,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	CAL851_BREAST	1	1	0.0173	TRUE	0	3	0	3	0	TRUE	ACH-000857
CAL851_BREAST	NUP153--E2F1	2	0	NUP153	1149	chr6:17706508:-	E2F1	28723	chr20:32267780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	NUP153->chr6:17615269-17706656:-,nucleoporin_153kDa,E2F1->E2F_transcription_factor_1,Oncogene{Bushman},chr20:32263489-32274210:-	CAL851_BREAST	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	RP11-114H23.1--RP11-114H23.2	2	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CAL851_BREAST	1	1	0.0173	FALSE	81	155	12	160	0	FALSE	ACH-000857
CAL851_BREAST	RP11-18I14.10--BCLAF1	2	0	RP11-18I14.10	1514	chr10:104210087:+	BCLAF1	16953	chr6:136597646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	RP11-18I14.10->chr10:104209574-104220863:+,BCLAF1->BCL2_associated_transcription_factor_1,chr6:136578001-136610989:-	CAL851_BREAST	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	2	0	0.71	1	0.0086	0.0346	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL851_BREAST	0.71	1	0.0432	FALSE	467	2173	244	435	0	FALSE	ACH-000857
CAL851_BREAST	FBXL20--GSDMB	1	2	FBXL20	3225	chr17:37499433:-	GSDMB	26544	chr17:38068750:-	ONLY_REF_SPLICE	NO	6	22	0.33	0.12	0.0086	0.0173	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	CAL851_BREAST	0.12	0.33	0.0259	TRUE	0	1	0	1	1	TRUE	ACH-000857
CAL851_BREAST	CYP39A1--FAM83B	1	1	CYP39A1	5936	chr6:46604126:-	FAM83B	24118	chr6:54804504:+	ONLY_REF_SPLICE	NO	21	21	0.09	0.09	0.0086	0.0086	CYP39A1->chr6:46517541-46620523:-,cytochrome_P450_family_39_subfamily_A_member_1,FAM83B->chr6:54711569-54806820:+,family_with_sequence_similarity_83_member_B	CAL851_BREAST	0.09	0.09	0.0172	TRUE	0	0	0	1	0	FALSE	ACH-000857
CAL851_BREAST	MITF--LINC00930	1	1	MITF	1267	chr3:69788852:+	LINC00930	28509	chr15:93113926:-	ONLY_REF_SPLICE	YES	7	7	0.22	0.22	0.0086	0.0086	MITF->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:69788586-70017488:+,microphthalmia-associated_transcription_factor,LINC00930->chr15:93111048-93115272:-,long_intergenic_non-protein_coding_RNA_930	CAL851_BREAST	0.22	0.22	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000857
CAL851_BREAST	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	15	3	0.12	0.4	0.0086	0.0086	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL851_BREAST	0.12	0.4	0.0172	FALSE	7	44	2	41	0	FALSE	ACH-000857
CAL851_BREAST	PICALM--C11orf73	1	1	PICALM	19502	chr11:85692172:-	C11orf73	33675	chr11:86037555:+	ONLY_REF_SPLICE	YES	226	88	0.01	0.02	0.0086	0.0086	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Heart_-_Atrial_Appendage=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73	CAL851_BREAST	0.01	0.02	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000857
SW900_LUNG	CELF1--MTCH2	173	112	CELF1	3345	chr11:47574544:-	MTCH2	32890	chr11:47660603:-	ONLY_REF_SPLICE	YES	94	184	0.75	0.61	2.1184	1.3715	YOSHIHARA_TCGA_num_samples[BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[51746],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	SW900_LUNG	0.61	0.75	3.4899	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	TIMM23B--LINC00843	112	37	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3715	0.4531	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SW900_LUNG	1	1	1.8246	TRUE	508	994	45	981	0	FALSE	ACH-000669
SW900_LUNG	AEBP2--DCLK1	64	4	AEBP2	2869	chr12:19593304:+	DCLK1	33050	chr13:36413313:-	ONLY_REF_SPLICE	YES	51	1	0.57	0.99	0.7837	0.049	AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,DCLK1->chr13:36345478-36705443:-,doublecortin_like_kinase_1	SW900_LUNG	0.57	0.99	0.8327	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	TIMM23--RP11-464F9.1	62	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	251	4	0.21	0.94	0.7592	0.0612	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SW900_LUNG	0.21	0.94	0.8204	TRUE	519	3926	326	965	0	FALSE	ACH-000669
SW900_LUNG	MIR142--IGH@	57	0	MIR142	1039	chr17:56409831:-	IGH@	113632	chr14:106209407:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.698	0	MIR142->chr17:56408245-56409869:-,microRNA_142,IGH@->Oncogene{Bushman}	SW900_LUNG	1	1	0.698	TRUE	0	1	0	3	1	TRUE	ACH-000669
SW900_LUNG	MT-TA--MT-TC	56	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6857	0.0245	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW900_LUNG	1	1	0.7102	FALSE	462	80	0	856	0	FALSE	ACH-000669
SW900_LUNG	MT-ND4--MT-ND4L	6	170	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	NO	39	0	0.82	1	0.0735	2.0817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW900_LUNG	0.82	1	2.1552	FALSE	344	826	44	306	0	FALSE	ACH-000669
SW900_LUNG	MT-ND4--MT-ND4L	5	172	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	25	0	0.88	1	0.0612	2.1062	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW900_LUNG	0.88	1	2.1674	FALSE	344	826	44	306	0	FALSE	ACH-000669
SW900_LUNG	MT-ND4--MT-ND4L	3	174	MT-ND4	2041	chrM:11800:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	15006	0	0.01	1	0.0367	2.1307	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW900_LUNG	0.01	1	2.1674	FALSE	344	826	44	305	0	FALSE	ACH-000669
SW900_LUNG	MT-ND4--MT-ND4L	14	121	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	8238	0	0.02	1	0.1714	1.4817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW900_LUNG	0.02	1	1.6531	FALSE	344	827	44	306	0	FALSE	ACH-000669
SW900_LUNG	MT-ND4--MT-ND4L	5	115	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	121	0	0.5	1	0.0612	1.4082	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW900_LUNG	0.5	1	1.4694	FALSE	344	827	44	306	0	FALSE	ACH-000669
SW900_LUNG	MT-ND4--MT-ND4L	4	117	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	0	0.96	1	0.049	1.4327	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW900_LUNG	0.96	1	1.4817	FALSE	344	821	44	306	0	FALSE	ACH-000669
SW900_LUNG	MT-ND4--MT-ND4L	24	27	MT-ND4	1093	chrM:10852:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.2939	0.3306	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW900_LUNG	0.89	1	0.6245	FALSE	344	826	44	306	0	FALSE	ACH-000669
SW900_LUNG	MT-ND5--MT-ATP8	24	3	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2939	0.0367	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW900_LUNG	0.96	1	0.3306	FALSE	43	37	8	105	0	FALSE	ACH-000669
SW900_LUNG	NPM1P24--SET	18	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2204	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SW900_LUNG	1	1	0.2204	TRUE	0	0	0	434	0	FALSE	ACH-000669
SW900_LUNG	MT-ND4--MT-ND1	16	3	MT-ND4	2043	chrM:11802:+	MT-ND1	5745	chrM:3673:+	INCL_NON_REF_SPLICE	NO	14912	10170	0	0	0.1959	0.0367	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SW900_LUNG	0	0	0.2326	FALSE	51	52	3	16	0	FALSE	ACH-000669
SW900_LUNG	MIOX--ADM2	12	7	MIOX	2302	chr22:50926514:+	ADM2	10455	chr22:50922574:+	INCL_NON_REF_SPLICE	YES	0	22	1	0.46	0.1469	0.0857	LOCAL_REARRANGEMENT:+:[344],MIOX->chr22:50925213-50929077:+,myo-inositol_oxygenase,ADM2->adrenomedullin_2,chr22:50919985-50924869:+	SW900_LUNG	0.46	1	0.2326	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	MT-ND6--MT-TE	11	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1347	0.1347	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW900_LUNG	1	1	0.2694	FALSE	499	1288	110	792	0	FALSE	ACH-000669
SW900_LUNG	MT-ND6--MT-TE	13	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1592	0.0122	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW900_LUNG	1	1	0.1714	FALSE	499	1288	110	792	0	FALSE	ACH-000669
SW900_LUNG	PPP2R5B--RP11-59N23.3	13	1	PPP2R5B	8155	chr11:64695897:+	RP11-59N23.3	17767	chr12:21912848:+	ONLY_REF_SPLICE	YES	13	0	0.52	1	0.1592	0.0122	PPP2R5B->chr11:64685025-64701945:+,protein_phosphatase_2_regulatory_subunit_B',_beta,RP11-59N23.3->chr12:21815247-21912966:+	SW900_LUNG	0.52	1	0.1714	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	MT-ND6--MT-TE	12	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1469	0.0245	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW900_LUNG	1	1	0.1714	FALSE	499	1288	110	792	0	FALSE	ACH-000669
SW900_LUNG	MT-ND4--MT-ND4L	5	29	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.0612	0.3551	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW900_LUNG	0.89	1	0.4163	FALSE	344	821	44	306	0	FALSE	ACH-000669
SW900_LUNG	NRIP1--AF127936.7	10	9	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	19	0	0.5	1	0.1225	0.1102	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW900_LUNG	0.5	1	0.2327	FALSE	164	806	69	479	0	FALSE	ACH-000669
SW900_LUNG	MT-ND5--MT-ATP8	12	0	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1469	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW900_LUNG	1	1	0.1469	FALSE	43	37	8	105	0	FALSE	ACH-000669
SW900_LUNG	RP11-96H19.1--RP11-446N19.1	9	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.9	1	0.1102	0.1102	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW900_LUNG	0.9	1	0.2204	FALSE	407	2205	196	549	0	FALSE	ACH-000669
SW900_LUNG	MT-ND4--MT-ND4L	6	19	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	39	0	0.39	1	0.0735	0.2327	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW900_LUNG	0.39	1	0.3062	FALSE	344	826	44	306	0	FALSE	ACH-000669
SW900_LUNG	MT-TA--MT-TC	10	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1225	0.0367	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW900_LUNG	1	1	0.1592	FALSE	462	80	0	856	0	FALSE	ACH-000669
SW900_LUNG	MT-ND4--MT-ND1	10	2	MT-ND4	1213	chrM:10972:+	MT-ND1	5394	chrM:3322:+	INCL_NON_REF_SPLICE	YES	14457	0	0	1	0.1225	0.0245	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SW900_LUNG	0	1	0.147	FALSE	51	50	3	16	0	FALSE	ACH-000669
SW900_LUNG	MT-ATP6--MT-CO1	10	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12440	27871	0	0	0.1225	0.0122	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW900_LUNG	0	0	0.1347	FALSE	183	104	9	328	0	FALSE	ACH-000669
SW900_LUNG	MT-ATP6--MT-CO1	7	9	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	1844	24646	0.01	0	0.0857	0.1102	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW900_LUNG	0	0.01	0.1959	FALSE	183	104	9	328	0	FALSE	ACH-000669
SW900_LUNG	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1102	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SW900_LUNG	1	1	0.1102	FALSE	13	9	0	364	0	FALSE	ACH-000669
SW900_LUNG	RP4-565E6.1--HYDIN	8	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	2	1	0.86	0.098	0.049	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SW900_LUNG	0.86	1	0.147	TRUE	456	1387	91	133	0	FALSE	ACH-000669
SW900_LUNG	MT-ATP6--MT-CO1	8	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	11831	25851	0	0	0.098	0.0245	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW900_LUNG	0	0	0.1225	FALSE	183	104	9	328	0	FALSE	ACH-000669
SW900_LUNG	RALGAPA2--LARGE	7	5	RALGAPA2	3278	chr20:20656880:-	LARGE	73715	chr22:33733787:-	ONLY_REF_SPLICE	YES	6	4	0.67	0.75	0.0857	0.0612	{Klijn_CCL:Lung=1},RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-,LARGE->chr22:33558212-34318829:-,like-glycosyltransferase	SW900_LUNG	0.67	0.75	0.1469	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.098	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SW900_LUNG	1	1	0.098	FALSE	13	9	0	364	0	FALSE	ACH-000669
SW900_LUNG	RP11-123O10.4--GRIP1	7	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0857	0.0245	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SW900_LUNG	1	1	0.1102	FALSE	416	2512	207	587	0	FALSE	ACH-000669
SW900_LUNG	MT-ATP6--MT-CO1	7	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0857	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW900_LUNG	1	1	0.0857	FALSE	183	104	9	328	0	FALSE	ACH-000669
SW900_LUNG	NRIP1--AF127936.7	6	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0735	0.0367	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW900_LUNG	0.9	1	0.1102	FALSE	292	1546	117	613	0	FALSE	ACH-000669
SW900_LUNG	ADRBK2--SEZ6L	5	6	ADRBK2	15003	chr22:26091181:+	SEZ6L	34623	chr22:26688372:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0612	0.0735	ADRBK2->adrenergic,_beta,_receptor_kinase_2,chr22:25960816-26125261:+,SEZ6L->chr22:26565440-26779562:+,seizure_related_6_homolog_like	SW900_LUNG	1	1	0.1347	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	GPR98--ITK	6	0	GPR98	27071	chr5:89954095:+	ITK	110955	chr5:156593099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0735	0	GPR98->chr5:89825161-90460038:+,ITK->IL2_inducible_T-cell_kinase,Oncogene{Bushman},chr5:156569944-156682201:+	SW900_LUNG	1	1	0.0735	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	MT-ATP6--MT-CO1	6	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0735	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW900_LUNG	1	1	0.0735	FALSE	183	104	9	328	0	FALSE	ACH-000669
SW900_LUNG	MT-ND5--MT-ATP8	6	0	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0735	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW900_LUNG	1	1	0.0735	FALSE	43	37	8	105	0	FALSE	ACH-000669
SW900_LUNG	MT-ND5--MT-ATP8	5	3	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	4198	0	0	1	0.0612	0.0367	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW900_LUNG	0	1	0.0979	FALSE	43	37	8	105	0	FALSE	ACH-000669
SW900_LUNG	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.049	0.0857	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW900_LUNG	0.85	1	0.1347	FALSE	515	4851	409	746	0	FALSE	ACH-000669
SW900_LUNG	MT-ND5--MT-ATP8	5	2	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	3279	1	0	0.88	0.0612	0.0245	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW900_LUNG	0	0.88	0.0857	FALSE	43	37	8	105	0	FALSE	ACH-000669
SW900_LUNG	MT-CO1--MT-ND1	5	1	MT-CO1	1699	chrM:6602:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	27299	6788	0	0	0.0612	0.0122	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SW900_LUNG	0	0	0.0734	FALSE	39	30	6	19	0	FALSE	ACH-000669
SW900_LUNG	COL1A1--NPM1	5	0	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0612	0	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	SW900_LUNG	1	1	0.0612	TRUE	0	0	0	31	0	FALSE	ACH-000669
SW900_LUNG	MT-ND1--MT-RNR2	4	4	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	48	0	0.14	1	0.049	0.049	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SW900_LUNG	0.14	1	0.098	FALSE	114	26	4	85	0	FALSE	ACH-000669
SW900_LUNG	MT-TA--MT-TC	4	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0.049	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW900_LUNG	1	1	0.098	FALSE	462	80	0	856	0	FALSE	ACH-000669
SW900_LUNG	MT-ND4--MT-ND4L	4	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0.0367	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW900_LUNG	1	1	0.0857	FALSE	344	821	44	306	0	FALSE	ACH-000669
SW900_LUNG	NRIP1--AF127936.7	3	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.39	1	0.0367	0.0735	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW900_LUNG	0.39	1	0.1102	FALSE	125	705	46	456	0	FALSE	ACH-000669
SW900_LUNG	RP11-444D3.1--SOX5	4	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.049	0.0122	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SW900_LUNG	1	1	0.0612	TRUE	477	1352	189	275	0	FALSE	ACH-000669
SW900_LUNG	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	16	1	0.24	0.049	0.0122	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW900_LUNG	0.24	1	0.0612	TRUE	458	1351	185	561	0	FALSE	ACH-000669
SW900_LUNG	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	39	1	0.11	0.049	0.0122	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW900_LUNG	0.11	1	0.0612	TRUE	465	1949	224	605	0	FALSE	ACH-000669
SW900_LUNG	RPS15--DAZAP1	4	1	RPS15	1534	chr19:1438891:+	DAZAP1	13820	chr19:1422347:+	ONLY_REF_SPLICE	YES	350	231	0.01	0.02	0.049	0.0122	LOCAL_REARRANGEMENT:+:[2639],RPS15->chr19:1438358-1440583:+,ribosomal_protein_S15,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	SW900_LUNG	0.01	0.02	0.0612	FALSE	0	0	0	2	0	FALSE	ACH-000669
SW900_LUNG	AEBP2--DCLK1	3	4	AEBP2	3226	chr12:19593661:+	DCLK1	33050	chr13:36413313:-	ONLY_REF_SPLICE	YES	68	1	0.09	0.88	0.0367	0.049	AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,DCLK1->chr13:36345478-36705443:-,doublecortin_like_kinase_1	SW900_LUNG	0.09	0.88	0.0857	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	IGFBP4--NPM1	4	0	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	SW900_LUNG	1	1	0.049	TRUE	0	0	0	38	0	FALSE	ACH-000669
SW900_LUNG	MT-ND4--MT-ND1	4	0	MT-ND4	1386	chrM:11145:+	MT-ND1	5882	chrM:3810:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SW900_LUNG	1	1	0.049	FALSE	51	52	3	16	0	FALSE	ACH-000669
SW900_LUNG	MT-ND4--MT-ND4L	3	4	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	4	0	0.64	1	0.0367	0.049	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW900_LUNG	0.64	1	0.0857	FALSE	344	821	44	306	0	FALSE	ACH-000669
SW900_LUNG	MT-ND4--MT-ND4L	3	4	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0367	0.049	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW900_LUNG	0.78	1	0.0857	FALSE	344	821	44	306	0	FALSE	ACH-000669
SW900_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	12440	0	0	1	0.0367	0.0245	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW900_LUNG	0	1	0.0612	FALSE	182	97	9	327	0	FALSE	ACH-000669
SW900_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	12337	25724	0	0	0.0367	0.0245	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW900_LUNG	0	0	0.0612	FALSE	183	104	9	328	0	FALSE	ACH-000669
SW900_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	10645	24964	0	0	0.0367	0.0122	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW900_LUNG	0	0	0.0489	FALSE	183	104	9	328	0	FALSE	ACH-000669
SW900_LUNG	MT-CO1--MT-ND1	3	1	MT-CO1	1653	chrM:6556:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	28109	6788	0	0	0.0367	0.0122	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SW900_LUNG	0	0	0.0489	FALSE	39	30	6	19	0	FALSE	ACH-000669
SW900_LUNG	MT-CO1--MT-ND1	3	1	MT-CO1	1585	chrM:6488:+	MT-ND1	5567	chrM:3331:+	INCL_NON_REF_SPLICE	YES	24445	0	0	1	0.0367	0.0122	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SW900_LUNG	0	1	0.0489	FALSE	39	30	6	19	0	FALSE	ACH-000669
SW900_LUNG	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0122	0.1102	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW900_LUNG	0.83	1	0.1224	FALSE	275	511	55	178	0	FALSE	ACH-000669
SW900_LUNG	EFNA4--RUSC1	3	0	EFNA4	2917	chr1:155039916:+	RUSC1	11568	chr1:155294636:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	{Klijn_CCL:Lymphoid=1},EFNA4->chr1:155036207-155042029:+,ephrin_A4,RUSC1->RUN_and_SH3_domain_containing_1,chr1:155290687-155300905:+	SW900_LUNG	1	1	0.0367	TRUE	0	0	0	2	0	TRUE	ACH-000669
SW900_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW900_LUNG	1	1	0.0367	FALSE	183	104	9	328	0	FALSE	ACH-000669
SW900_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW900_LUNG	1	1	0.0367	FALSE	499	1288	110	792	0	FALSE	ACH-000669
SW900_LUNG	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW900_LUNG	1	1	0.0367	FALSE	462	80	0	856	0	FALSE	ACH-000669
SW900_LUNG	PSAP--GAPDH	3	0	PSAP	8522	chr10:73581679:-	GAPDH	20181	chr12:6646831:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	SW900_LUNG	1	1	0.0367	TRUE	0	0	0	8	0	TRUE	ACH-000669
SW900_LUNG	AC024084.1--AC009784.3	2	2	AC024084.1	3174	chr7:135743253:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0.0245	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	SW900_LUNG	1	1	0.049	FALSE	2	5	0	14	0	FALSE	ACH-000669
SW900_LUNG	AC024084.1--AC009784.3	2	1	AC024084.1	2134	chr7:135715781:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	NO	0	4	1	0.43	0.0245	0.0122	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	SW900_LUNG	0.43	1	0.0367	FALSE	0	3	0	12	0	FALSE	ACH-000669
SW900_LUNG	RP4-565E6.1--HYDIN	2	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	5	1	0.38	0.0245	0.0122	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SW900_LUNG	0.38	1	0.0367	TRUE	84	87	4	41	0	FALSE	ACH-000669
SW900_LUNG	CPSF6--C9orf3	2	0	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SW900_LUNG	1	1	0.0245	TRUE	53	99	2	44	0	FALSE	ACH-000669
SW900_LUNG	SEPT11--CCNI	2	0	SEPT11	4239	chr4:77895960:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	SW900_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	NRIP1--AF127936.7	1	3	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	14	1	0.22	0.8	0.0122	0.0367	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW900_LUNG	0.22	0.8	0.0489	FALSE	7	44	2	41	0	FALSE	ACH-000669
SW900_LUNG	RALGAPA2--LARGE	1	2	RALGAPA2	1114	chr20:20693018:-	LARGE	73715	chr22:33733787:-	ONLY_REF_SPLICE	YES	4	4	0.43	0.43	0.0122	0.0245	{Klijn_CCL:Lung=1},RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-,LARGE->chr22:33558212-34318829:-,like-glycosyltransferase	SW900_LUNG	0.43	0.43	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	AC024084.1--AC009784.3	1	1	AC024084.1	2134	chr7:135715781:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0122	0.0122	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	SW900_LUNG	1	1	0.0244	FALSE	1	6	0	14	0	FALSE	ACH-000669
SW900_LUNG	AC024084.1--AC009784.3	1	1	AC024084.1	3174	chr7:135743253:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	YES	0	4	1	0.33	0.0122	0.0122	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	SW900_LUNG	0.33	1	0.0244	FALSE	0	2	0	6	0	FALSE	ACH-000669
SW900_LUNG	BAZ1A--HEATR5A	1	1	BAZ1A	3435	chr14:35331250:-	HEATR5A	38097	chr14:31872255:-	ONLY_REF_SPLICE	YES	33	3	0.06	0.4	0.0122	0.0122	BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,HEATR5A->HEAT_repeat_containing_5A,chr14:31760994-31889788:-	SW900_LUNG	0.06	0.4	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000669
SW900_LUNG	FASN--HSPA8	1	1	FASN	17747	chr17:80038246:-	HSPA8	24679	chr11:122932039:-	ONLY_REF_SPLICE	YES	219	79	0.01	0.02	0.0122	0.0122	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,HSPA8->chr11:122928197-122933938:-,heat_shock_protein_family_A_(Hsp70)_member_8	SW900_LUNG	0.01	0.02	0.0244	FALSE	0	0	0	2	0	FALSE	ACH-000669
SW900_LUNG	PPP6R1--CLPTM1L	1	1	PPP6R1	7164	chr19:55753534:-	CLPTM1L	33221	chr5:1323026:-	ONLY_REF_SPLICE	YES	331	565	0.01	0	0.0122	0.0122	PPP6R1->chr19:55741148-55770363:-,protein_phosphatase_6_regulatory_subunit_1,CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-	SW900_LUNG	0	0.01	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000669
SW900_LUNG	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0122	0.0122	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SW900_LUNG	1	1	0.0244	FALSE	93	270	15	244	0	FALSE	ACH-000669
SW900_LUNG	UBAP1--UBE2D2	1	1	UBAP1	1236	chr9:34179238:+	UBE2D2	18243	chr5:138979957:+	ONLY_REF_SPLICE	YES	108	30	0.02	0.06	0.0122	0.0122	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	SW900_LUNG	0.02	0.06	0.0244	TRUE	1	0	0	3	0	FALSE	ACH-000669
SW900_LUNG	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	55	0	0.04	1	0.0122	0.0122	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SW900_LUNG	0.04	1	0.0244	FALSE	272	151	14	158	0	FALSE	ACH-000669
U118MG_CENTRAL_NERVOUS_SYSTEM	PTPN21--CEP128	108	47	PTPN21	3335	chr14:89016582:-	CEP128	46364	chr14:81304622:-	ONLY_REF_SPLICE	YES	21	19	0.88	0.89	0.7346	0.3197	PTPN21->Oncogene{Bushman},chr14:88932122-89021077:-,protein_tyrosine_phosphatase,_non-receptor_type_21,CEP128->centrosomal_protein_128,chr14:80943330-81425861:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.88	0.89	1.0543	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	96	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.653	0.1905	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.8435	TRUE	508	994	45	981	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	52	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	199	4	0.22	0.93	0.3537	0.0272	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.22	0.93	0.3809	TRUE	519	3926	326	965	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	38	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2585	0.0068	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.2653	FALSE	462	80	0	856	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	34	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2313	0.0068	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.2381	FALSE	499	1288	110	792	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CARHSP1--PDILT	33	0	CARHSP1	1044	chr16:8962823:-	PDILT	18911	chr16:20387523:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2245	0	CARHSP1->calcium_regulated_heat_stable_protein_1,chr16:8946799-8962866:-,PDILT->chr16:20370492-20416059:-,protein_disulfide_isomerase_like,_testis_expressed	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.2245	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	32	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2177	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.2177	TRUE	402	216	10	229	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	27	18	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	3	0	0.94	1	0.1837	0.1224	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.3061	TRUE	0	5	0	45	5	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	26	2	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1769	0.0136	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.1905	TRUE	0	3	0	38	3	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	23	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1564	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.1564	TRUE	0	0	0	518	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	20	8	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	13	1	0.68	0.136	0.0544	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.68	1	0.1904	TRUE	477	1352	189	275	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	ARFGEF1--PREX2	19	8	ARFGEF1	1514	chr8:68255399:-	PREX2	48348	chr8:68930081:+	ONLY_REF_SPLICE	YES	10	0	0.73	1	0.1292	0.0544	ARFGEF1->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_1,chr8:68085747-68255912:-,PREX2->ArcherDX_panel,FoundationOne_panel,chr8:68864353-69149265:+,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_2	U118MG_CENTRAL_NERVOUS_SYSTEM	0.73	1	0.1836	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	18	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.1224	0.068	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	U118MG_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.1904	FALSE	499	1288	110	792	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	14	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	51	20	0.35	0.57	0.0952	0.0884	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	U118MG_CENTRAL_NERVOUS_SYSTEM	0.35	0.57	0.1836	TRUE	267	562	48	632	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	HSPBP1--GRK5	17	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1156	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.1156	TRUE	1	39	0	134	39	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CARHSP1--PDILT	16	0	CARHSP1	1044	chr16:8962823:-	PDILT	22504	chr16:20381011:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1088	0	CARHSP1->calcium_regulated_heat_stable_protein_1,chr16:8946799-8962866:-,PDILT->chr16:20370492-20416059:-,protein_disulfide_isomerase_like,_testis_expressed	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.1088	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CEP128--ALDH6A1	13	9	CEP128	16734	chr14:81307026:-	ALDH6A1	44866	chr14:74541720:-	ONLY_REF_SPLICE	YES	17	14	0.56	0.61	0.0884	0.0612	CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,ALDH6A1->aldehyde_dehydrogenase_6_family_member_A1,chr14:74523553-74551196:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.56	0.61	0.1496	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	13	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0884	0.0068	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0952	FALSE	499	1288	110	792	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	13	0	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0884	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0884	TRUE	0	1	0	26	1	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	ENTPD4--PHYHIP	11	8	ENTPD4	18819	chr8:23261467:-	PHYHIP	26319	chr8:22085899:-	ONLY_REF_SPLICE	YES	0	1	1	0.95	0.0748	0.0544	ENTPD4->chr8:23243296-23315208:-,ectonucleoside_triphosphate_diphosphohydrolase_4,PHYHIP->chr8:22077222-22089854:-,phytanoyl-CoA_2-hydroxylase_interacting_protein	U118MG_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.1292	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PTPN21--CEP128	1	47	PTPN21	4458	chr14:89013873:-	CEP128	46364	chr14:81304622:-	ONLY_REF_SPLICE	YES	24	19	0.67	0.72	0.0068	0.3197	PTPN21->Oncogene{Bushman},chr14:88932122-89021077:-,protein_tyrosine_phosphatase,_non-receptor_type_21,CEP128->centrosomal_protein_128,chr14:80943330-81425861:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.67	0.72	0.3265	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	VCL--ADK	10	9	VCL	1262	chr10:75758133:+	ADK	44860	chr10:76468079:+	ONLY_REF_SPLICE	YES	515	134	0.04	0.12	0.068	0.0612	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[31042],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ADK->adenosine_kinase,chr10:75910960-76469061:+	U118MG_CENTRAL_NERVOUS_SYSTEM	0.04	0.12	0.1292	FALSE	0	2	0	1	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	12	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0816	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0816	FALSE	292	1546	117	613	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	9	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	48	21	0.28	0.47	0.0612	0.068	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	U118MG_CENTRAL_NERVOUS_SYSTEM	0.28	0.47	0.1292	TRUE	267	562	48	632	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	8	13	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.0544	0.0884	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	U118MG_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.1428	FALSE	499	1288	110	792	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	10	3	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	18	1	0.42	0.068	0.0204	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	U118MG_CENTRAL_NERVOUS_SYSTEM	0.42	1	0.0884	TRUE	254	575	65	124	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	9	4	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	45	0	0.22	1	0.0612	0.0272	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	U118MG_CENTRAL_NERVOUS_SYSTEM	0.22	1	0.0884	FALSE	21	45	1	60	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	7	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0476	0.0612	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.1088	FALSE	499	1288	110	792	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND4	3	24	MT-ND5	2813	chrM:14149:+	MT-ND4	5957	chrM:10904:+	INCL_NON_REF_SPLICE	YES	0	2693	1	0.01	0.0204	0.1632	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	U118MG_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.1836	FALSE	29	25	1	23	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND4	3	23	MT-ND5	2721	chrM:14057:+	MT-ND4	5917	chrM:10864:+	INCL_NON_REF_SPLICE	YES	14	310	0.65	0.08	0.0204	0.1564	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	U118MG_CENTRAL_NERVOUS_SYSTEM	0.08	0.65	0.1768	FALSE	29	25	1	23	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RPSAP52--HMGA2	8	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	17	404	0.37	0.02	0.0544	0.0136	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	U118MG_CENTRAL_NERVOUS_SYSTEM	0.02	0.37	0.068	FALSE	0	59	0	125	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND4	5	13	MT-ND5	2455	chrM:13791:+	MT-ND4	6098	chrM:11045:+	INCL_NON_REF_SPLICE	YES	1835	8040	0.01	0	0.034	0.0884	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	U118MG_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.1224	FALSE	47	28	1	23	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND4	4	14	MT-ND5	2647	chrM:13983:+	MT-ND4	5977	chrM:10924:+	INCL_NON_REF_SPLICE	NO	1488	3716	0.01	0	0.0272	0.0952	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	U118MG_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.1224	FALSE	29	25	1	23	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	6	5	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.0408	0.034	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.79	1	0.0748	TRUE	0	1	0	20	1	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CARHSP1--PDILT	7	0	CARHSP1	1044	chr16:8962823:-	PDILT	26002	chr16:20371979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0476	0	CARHSP1->calcium_regulated_heat_stable_protein_1,chr16:8946799-8962866:-,PDILT->chr16:20370492-20416059:-,protein_disulfide_isomerase_like,_testis_expressed	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0476	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND4	3	15	MT-ND5	2718	chrM:14054:+	MT-ND4	6199	chrM:11146:+	INCL_NON_REF_SPLICE	YES	15	10545	0.55	0	0.0204	0.102	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	U118MG_CENTRAL_NERVOUS_SYSTEM	0	0.55	0.1224	FALSE	47	27	1	24	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND4	3	15	MT-ND5	2667	chrM:14003:+	MT-ND4	5998	chrM:10945:+	INCL_NON_REF_SPLICE	NO	1040	4633	0.02	0	0.0204	0.102	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	U118MG_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.1224	FALSE	29	25	1	23	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	ENTPD4--R3HCC1	5	5	ENTPD4	18819	chr8:23261467:-	R3HCC1	32269	chr8:23153480:+	ONLY_REF_SPLICE	YES	0	110	1	0.08	0.034	0.034	LOCAL_INVERSION:-:+:[89504],ENTPD4->chr8:23243296-23315208:-,ectonucleoside_triphosphate_diphosphohydrolase_4,R3HCC1->R3H_domain_and_coiled-coil_containing_1,chr8:23127633-23153792:+	U118MG_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.068	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	5	3	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	3	9	0.73	0.47	0.034	0.0204	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.47	0.73	0.0544	TRUE	0	1	0	24	1	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND4	3	11	MT-ND5	2570	chrM:13906:+	MT-ND4	6251	chrM:11198:+	INCL_NON_REF_SPLICE	YES	2071	10588	0.01	0	0.0204	0.0748	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	U118MG_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0952	FALSE	47	28	1	24	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	5	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2083	0	0	1	0.034	0.0136	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	U118MG_CENTRAL_NERVOUS_SYSTEM	0	1	0.0476	FALSE	13	9	0	364	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND4	4	6	MT-ND5	2099	chrM:13435:+	MT-ND4	6098	chrM:11045:+	INCL_NON_REF_SPLICE	YES	3891	8040	0	0	0.0272	0.0408	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	U118MG_CENTRAL_NERVOUS_SYSTEM	0	0	0.068	FALSE	47	29	1	24	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND4	3	9	MT-ND5	2247	chrM:13583:+	MT-ND4	6112	chrM:11059:+	INCL_NON_REF_SPLICE	YES	2583	9123	0	0	0.0204	0.0612	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	U118MG_CENTRAL_NERVOUS_SYSTEM	0	0	0.0816	FALSE	47	29	1	24	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	3	9	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	14	1	0.46	0.0204	0.0612	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.46	1	0.0816	TRUE	160	277	29	98	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	TMED5--DR1	5	1	TMED5	1675	chr1:93645611:-	DR1	19402	chr1:93819465:+	ONLY_REF_SPLICE	YES	183	316	0.03	0.02	0.034	0.0068	TMED5->chr1:93615299-93646285:-,transmembrane_p24_trafficking_protein_5,DR1->chr1:93811445-93835055:+,down-regulator_of_transcription_1	U118MG_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.0408	TRUE	0	0	0	1	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CALM3--MT-ND4L	5	0	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.034	FALSE	1	1	0	107	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CTD-3116E22.6--ZNF274	5	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.034	TRUE	0	0	0	13	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	LSAMP--RP11-768G7.2	5	0	LSAMP	1067	chr3:117716029:-	RP11-768G7.2	27686	chr3:117408925:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	NEIGHBORS_OVERLAP:-:-:[12239],LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein,RP11-768G7.2->chr3:117397540-117409779:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.034	FALSE	0	2	0	3	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	4	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	64	0	0.1	1	0.0272	0.0204	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	U118MG_CENTRAL_NERVOUS_SYSTEM	0.1	1	0.0476	FALSE	56	216	12	147	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND4	4	2	MT-ND5	2112	chrM:13448:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	4025	5464	0	0	0.0272	0.0136	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	U118MG_CENTRAL_NERVOUS_SYSTEM	0	0	0.0408	FALSE	47	29	1	25	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND4	4	2	MT-ND5	2509	chrM:13845:+	MT-ND4	7031	chrM:11978:+	INCL_NON_REF_SPLICE	YES	2084	27	0	0.18	0.0272	0.0136	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	U118MG_CENTRAL_NERVOUS_SYSTEM	0	0.18	0.0408	FALSE	45	28	1	23	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	KHDRBS1--C1orf228	3	4	KHDRBS1	3791	chr1:32497241:+	C1orf228	19153	chr1:45153868:+	ONLY_REF_SPLICE	YES	312	0	0.02	1	0.0204	0.0272	KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+,C1orf228->chr1:45140364-45191263:+,chromosome_1_open_reading_frame_228	U118MG_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0476	TRUE	0	0	0	1	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	4	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0272	FALSE	125	705	46	456	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	4	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0272	FALSE	16	356	14	466	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0272	TRUE	465	1949	224	605	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	SAMD1--NCL	4	0	SAMD1	2749	chr19:14200100:-	NCL	12168	chr2:232326293:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	SAMD1->chr19:14198652-14201848:-,sterile_alpha_motif_domain_containing_1,NCL->chr2:232318242-232348352:-,nucleolin	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0272	TRUE	0	0	0	3	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND4	3	3	MT-ND5	1664	chrM:13000:+	MT-ND4	6153	chrM:11100:+	INCL_NON_REF_SPLICE	YES	2153	10002	0	0	0.0204	0.0204	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	U118MG_CENTRAL_NERVOUS_SYSTEM	0	0	0.0408	FALSE	45	27	1	22	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	3	MT-ND6	1198	chrM:14476:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0204	0.0204	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	U118MG_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0408	FALSE	499	1288	110	792	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND4	3	2	MT-ND5	1408	chrM:12744:+	MT-ND4	5977	chrM:10924:+	INCL_NON_REF_SPLICE	YES	310	3716	0.02	0	0.0204	0.0136	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	U118MG_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.034	FALSE	17	23	0	20	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND4	3	2	MT-ND5	1408	chrM:12744:+	MT-ND4	5805	chrM:10752:+	INCL_NON_REF_SPLICE	YES	310	0	0.02	1	0.0204	0.0136	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	U118MG_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.034	FALSE	16	23	0	20	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RP11-1E3.1--RP11-455B3.1	3	2	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0204	0.0136	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.034	TRUE	13	49	2	38	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	6	RP11-444D3.1	8531	chr12:24430150:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	14	1	0.36	0.0136	0.0408	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.36	1	0.0544	TRUE	13	17	1	13	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0.0136	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.034	TRUE	458	1351	185	561	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RPSAP52--HMGA2	3	2	RPSAP52	1132	chr12:66220623:-	HMGA2	10409	chr12:66232299:+	ONLY_REF_SPLICE	YES	17	271	0.23	0.02	0.0204	0.0136	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	U118MG_CENTRAL_NERVOUS_SYSTEM	0.02	0.23	0.034	FALSE	0	2	0	7	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	3	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0204	0.0068	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0272	FALSE	462	80	0	856	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CARHSP1--PDILT	3	0	CARHSP1	1044	chr16:8962823:-	PDILT	23702	chr16:20376862:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CARHSP1->calcium_regulated_heat_stable_protein_1,chr16:8946799-8962866:-,PDILT->chr16:20370492-20416059:-,protein_disulfide_isomerase_like,_testis_expressed	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	DSCR3--TTC3	3	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	9	0	44	1	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	FALSE	25	145	6	90	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	STX6--SLC13A4	3	0	STX6	1273	chr1:180991775:-	SLC13A4	23460	chr7:135390398:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	STX6->chr1:180941861-180992047:-,syntaxin_6,SLC13A4->chr7:135365985-135414006:-,solute_carrier_family_13_member_4	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	TRIM9--RBPJ	3	0	TRIM9	2944	chr14:51560836:-	RBPJ	33514	chr4:26364068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	TRIM9->chr14:51441980-51562779:-,tripartite_motif_containing_9,RBPJ->chr4:26165077-26436541:+,recombination_signal_binding_protein_for_immunoglobulin_kappa_J_region	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	ZZZ3--PIGK	3	0	ZZZ3	1158	chr1:78148947:-	PIGK	34642	chr1:77588044:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ZZZ3->chr1:78028101-78149104:-,zinc_finger_ZZ-type_containing_3,PIGK->chr1:77554675-77685115:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_K	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0204	TRUE	0	1	0	2	1	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	KHDRBS1--C1orf228	2	1	KHDRBS1	3791	chr1:32497241:+	C1orf228	20066	chr1:45154781:+	ONLY_REF_SPLICE	NO	312	0	0.01	1	0.0136	0.0068	KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+,C1orf228->chr1:45140364-45191263:+,chromosome_1_open_reading_frame_228	U118MG_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	TIMM23B--AGAP6	2	1	TIMM23B	6950	chr10:51387763:+	AGAP6	10946	chr10:51749068:+	ONLY_REF_SPLICE	YES	0	20	1	0.13	0.0136	0.0068	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,AGAP6->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_6,chr10:51748078-51770259:+	U118MG_CENTRAL_NERVOUS_SYSTEM	0.13	1	0.0204	TRUE	2	1	1	8	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	ADAM9--TAOK1	2	0	ADAM9	1292	chr8:38854679:+	TAOK1	55846	chr17:27861136:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,TAOK1->TAO_kinase_1,chr17:27717482-27878922:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	AFTPH--SERTAD2	2	0	AFTPH	1282	chr2:64751746:+	SERTAD2	20165	chr2:64864009:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	LOCAL_INVERSION:+:-:[38616],AFTPH->aftiphilin,chr2:64751465-64820139:+,SERTAD2->SERTA_domain_containing_2,chr2:64858755-64978139:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	AHI1--GNAS	2	0	AHI1	30632	chr6:135679270:-	GNAS	61369	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	AHI1->Abelson_helper_integration_site_1,Oncogene{Bushman},chr6:135604670-135818914:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	AP001432.14--TTC3	2	0	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	15	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	ARHGEF10--PABPC1L	2	0	ARHGEF10	3311	chr8:1791602:+	PABPC1L	49211	chr20:43552802:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	ARHGEF10->Rho_guanine_nucleotide_exchange_factor_10,chr8:1772142-1906807:+,PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	AUTS2--TYW1B	2	0	AUTS2	13589	chr7:70163606:+	TYW1B	46007	chr7:72209578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+,TYW1B->chr7:72023729-72298777:-,tRNA-yW_synthesizing_protein_1_homolog_B	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	BACH1--OSER1	2	0	BACH1	6196	chr21:30671919:+	OSER1	29542	chr20:42831714:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	BACH1->BTB_domain_and_CNC_homolog_1,chr21:30566392-31003071:+,OSER1->chr20:42825136-42839431:-,oxidative_stress_responsive_serine_rich_1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	BTN3A3--ECHS1	2	0	BTN3A3	3186	chr6:26444532:+	ECHS1	20941	chr10:135176437:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	BTN3A3->butyrophilin_subfamily_3_member_A3,chr6:26440700-26453643:+,ECHS1->chr10:135175984-135187193:-,enoyl-CoA_hydratase,_short_chain,_1,_mitochondrial	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	C2orf74--ALDH18A1	2	0	C2orf74	1089	chr2:61372331:+	ALDH18A1	14293	chr10:97388249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	C2orf74->chr2:61372243-61391964:+,chromosome_2_open_reading_frame_74,ALDH18A1->aldehyde_dehydrogenase_18_family_member_A1,chr10:97365696-97416463:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CDC5L--MCEE	2	0	CDC5L	9008	chr6:44376369:+	MCEE	25601	chr2:71351673:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	CDC5L->cell_division_cycle_5_like,chr6:44355262-44418163:+,MCEE->chr2:71336814-71357369:-,methylmalonyl-CoA_epimerase	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CHD2--CGGBP1	2	0	CHD2	6529	chr15:93444529:+	CGGBP1	62979	chr3:88107373:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,CGGBP1->CGG_triplet_repeat_binding_protein_1,chr3:88101094-88199035:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CLHC1--TCEA1	2	0	CLHC1	5395	chr2:55449371:-	TCEA1	23370	chr8:54923052:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	CLHC1->chr2:55401927-55459699:-,clathrin_heavy_chain_linker_domain_containing_1,TCEA1->Oncogene{Bushman},chr8:54879112-54935089:-,transcription_elongation_factor_A1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	COQ6--LSM14A	2	0	COQ6	4649	chr14:74422631:+	LSM14A	19936	chr19:34699834:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	COQ6->chr14:74416629-74430373:+,coenzyme_Q6,_monooxygenase,LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CTD-2410N18.5--RPLP1	2	0	CTD-2410N18.5	1312	chr5:133561451:-	RPLP1	8870	chr15:69747509:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	CTD-2410N18.5->chr5:133502861-133561762:-,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CTNNB1--TRAK1	2	0	CTNNB1	3896	chr3:41241161:+	TRAK1	27093	chr3:42166912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,TRAK1->chr3:42055294-42267381:+,trafficking_protein,_kinesin_binding_1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	DIDO1--EGFR	2	0	DIDO1	1157	chr20:61569148:-	EGFR	42697	chr7:55225356:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	DLC1--ATG5	2	0	DLC1	10024	chr8:13133771:-	ATG5	41937	chr6:106649964:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,ATG5->autophagy_related_5,chr6:106632351-106773666:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	ELK3--MED1	2	0	ELK3	5794	chr12:96617551:+	MED1	26447	chr17:37584043:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	ELK3->ELK3,_ETS_transcription_factor,Oncogene{Bushman},chr12:96588160-96663613:+,MED1->chr17:37560538-37607539:-,mediator_complex_subunit_1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	FAM20C--CTTN	2	0	FAM20C	5852	chr7:208976:+	CTTN	18473	chr11:70251371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	FUT8--CHURC1	2	0	FUT8	22918	chr14:66200099:+	CHURC1	30122	chr14:65390709:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,CHURC1->chr14:65381079-65411309:+,churchill_domain_containing_1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	GTF2H5--NEK9	2	0	GTF2H5	2113	chr6:158591570:+	NEK9	16302	chr14:75587877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	GTF2H5->chr6:158589384-158620376:+,general_transcription_factor_IIH_subunit_5,NEK9->NIMA_related_kinase_9,chr14:75548822-75594047:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	HMGA2--PTCD3	2	0	HMGA2	3338	chr12:66221867:+	PTCD3	47437	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	LEPREL4--MGST1	2	0	LEPREL4	3899	chr17:39965958:-	MGST1	18015	chr12:16510539:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	LEPREL4->chr17:39958199-39968856:-,MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MGST1--GLTSCR2	2	0	MGST1	5873	chr12:16507204:+	GLTSCR2	33359	chr19:48259785:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	MYL6B--PMF1	2	0	MYL6B	4337	chr12:56549376:+	PMF1	16497	chr1:156202111:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	MYL6B->chr12:56546040-56553431:+,myosin_light_chain_6B,PMF1->chr1:156182784-156212874:+,polyamine-modulated_factor_1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	FALSE	164	806	69	479	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	NUPL2--CADM1	2	0	NUPL2	3987	chr7:23226765:+	CADM1	21419	chr11:115111140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,CADM1->cell_adhesion_molecule_1,chr11:115039938-115375675:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PCMTD1--PLAG1	2	0	PCMTD1	1246	chr8:52811490:-	PLAG1	22743	chr8:57092072:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,PLAG1->Oncogene{Bushman},PLAG1_zinc_finger,chr8:57073463-57123883:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PELI3--SF3B2	2	0	PELI3	6844	chr11:66241396:+	SF3B2	17489	chr11:65822547:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	PELI3->chr11:66234216-66244808:+,pellino_E3_ubiquitin_protein_ligase_family_member_3,SF3B2->chr11:65818200-65836779:+,splicing_factor_3b_subunit_2	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PLOD1--C14orf80	2	0	PLOD1	6745	chr1:12012792:+	C14orf80	30891	chr14:105962217:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	PLOD1->chr1:11994262-12035595:+,procollagen-lysine,2-oxoglutarate_5-dioxygenase_1,C14orf80->chr14:105956192-105965912:+,chromosome_14_open_reading_frame_80	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PON2--COPS2	2	0	PON2	1940	chr7:95063571:-	COPS2	19991	chr15:49431850:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	PON2->chr7:95034175-95064510:-,paraoxonase_2,COPS2->COP9_signalosome_subunit_2,Oncogene{Bushman},chr15:49398268-49447858:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PPIL2--XPO6	2	0	PPIL2	20579	chr22:22043138:+	XPO6	63250	chr16:28109960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	PPIL2->chr22:22006559-22054304:+,peptidylprolyl_isomerase_like_2,XPO6->chr16:28109300-28223241:-,exportin_6	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RAD18--AC034187.2	2	0	RAD18	14138	chr3:8932073:-	AC034187.2	25478	chr3:8615560:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	RAD18->RAD18,_E3_ubiquitin_protein_ligase,chr3:8817088-9005457:-,AC034187.2->chr3:8615412-8634810:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RCC1--GBE1	2	0	RCC1	1142	chr1:28832596:+	GBE1	36126	chr3:81586246:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GBE1->chr3:81538850-81811312:-,glucan_(1,4-alpha-),_branching_enzyme_1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	FALSE	0	23	1	67	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RP11-18H7.1--GSK3B	2	0	RP11-18H7.1	1148	chr3:119813889:+	GSK3B	19505	chr3:119595355:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	LOCAL_INVERSION:+:-:[478],RP11-18H7.1->chr3:119813742-119855630:+,GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RP11-613M10.8--AKAP2	2	0	RP11-613M10.8	2282	chr9:37588808:-	AKAP2	30727	chr9:112898407:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	RP11-613M10.8->chr9:37512544-37592466:-,AKAP2->A-kinase_anchoring_protein_2,chr9:112542769-112934792:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	SBNO1--SPPL2A	2	0	SBNO1	2275	chr12:123834857:-	SPPL2A	49295	chr15:51018574:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	SBNO1->Oncogene{Bushman},chr12:123773656-123849390:-,strawberry_notch_homolog_1_(Drosophila),SPPL2A->chr15:50999506-51058005:-,signal_peptide_peptidase_like_2A	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	SOS1--MEF2A	2	0	SOS1	6326	chr2:39283843:-	MEF2A	48947	chr15:100246934:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-,MEF2A->chr15:100017370-100256671:+,myocyte_enhancer_factor_2A	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	SPINT2--SNAP47	2	0	SPINT2	1100	chr19:38734774:+	SNAP47	20351	chr1:227935393:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2,SNAP47->chr1:227916240-227968927:+,synaptosome_associated_protein_47kDa	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	STK11--AMMECR1L	2	0	STK11	3716	chr19:1207202:+	AMMECR1L	20471	chr2:128641886:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11,AMMECR1L->AMMECR1_like,chr2:128619204-128643496:-	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	TICRR--CTTNBP2	2	0	TICRR	24511	chr15:90170413:+	CTTNBP2	52050	chr7:117386153:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	TICRR->TOPBP1_interacting_checkpoint_and_replication_regulator,chr15:90118713-90174287:+,CTTNBP2->chr7:117350705-117514193:-,cortactin_binding_protein_2	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	TOPBP1--AGFG1	2	0	TOPBP1	6448	chr3:133374134:-	AGFG1	48682	chr2:228418426:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	TOPBP1->chr3:133317019-133380737:-,topoisomerase_(DNA)_II_binding_protein_1,AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	TWSG1--VAPA	2	0	TWSG1	2314	chr18:9337350:+	VAPA	17683	chr18:9931807:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	TWSG1->chr18:9334765-9402418:+,twisted_gastrulation_BMP_signaling_modulator_1,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	UBXN7--CDK13	2	0	UBXN7	9266	chr3:196118684:-	CDK13	32138	chr7:40037093:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	UBXN7->UBX_domain_protein_7,chr3:196074533-196159345:-,CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	WDR83--VIM	2	0	WDR83	4507	chr19:12781635:+	VIM	17766	chr10:17278293:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	WDR83->WD_repeat_domain_83,chr19:12777614-12786646:+,VIM->chr10:17270258-17279592:+,vimentin	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	ZNF451--CTNND1	2	0	ZNF451	2950	chr6:56955692:+	CTNND1	46728	chr11:57563049:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0	ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451,CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+	U118MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0136	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	1	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	64	0	0.06	1	0.0068	0.0204	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	U118MG_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0272	FALSE	1	13	0	24	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PTPN21--CEP128	1	3	PTPN21	4458	chr14:89013873:-	CEP128	48572	chr14:81297638:-	ONLY_REF_SPLICE	YES	24	39	0.14	0.09	0.0068	0.0204	PTPN21->Oncogene{Bushman},chr14:88932122-89021077:-,protein_tyrosine_phosphatase,_non-receptor_type_21,CEP128->centrosomal_protein_128,chr14:80943330-81425861:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.09	0.14	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	PTPN21--CEP128	1	3	PTPN21	3335	chr14:89016582:-	CEP128	48572	chr14:81297638:-	ONLY_REF_SPLICE	YES	21	39	0.16	0.09	0.0068	0.0204	PTPN21->Oncogene{Bushman},chr14:88932122-89021077:-,protein_tyrosine_phosphatase,_non-receptor_type_21,CEP128->centrosomal_protein_128,chr14:80943330-81425861:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.09	0.16	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	CPED1--EP400NL	1	2	CPED1	2194	chr7:120629924:+	EP400NL	49628	chr12:132604965:+	ONLY_REF_SPLICE	NO	107	10	0.03	0.23	0.0068	0.0136	CPED1->cadherin_like_and_PC-esterase_domain_containing_1,chr7:120628731-120937498:+,EP400NL->EP400_N-terminal_like,chr12:132568828-132613029:+	U118MG_CENTRAL_NERVOUS_SYSTEM	0.03	0.23	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	FAM208A--TAF9	1	1	FAM208A	1562	chr3:56716704:-	TAF9	35785	chr5:68662422:-	ONLY_REF_SPLICE	YES	32	45	0.06	0.04	0.0068	0.0068	FAM208A->chr3:56654161-56717265:-,family_with_sequence_similarity_208_member_A,TAF9->TATA-box_binding_protein_associated_factor_9,chr5:68646811-68665840:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.04	0.06	0.0136	TRUE	0	0	0	1	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	FBXO30--CCDC82	1	1	FBXO30	1151	chr6:146135739:-	CCDC82	21460	chr11:96116637:-	ONLY_REF_SPLICE	NO	18	93	0.1	0.02	0.0068	0.0068	FBXO30->F-box_protein_30,chr6:146114638-146135889:-,CCDC82->chr11:96085933-96123087:-,coiled-coil_domain_containing_82	U118MG_CENTRAL_NERVOUS_SYSTEM	0.02	0.1	0.0136	TRUE	0	0	0	1	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	KIAA0319L--ZMYM4	1	1	KIAA0319L	6988	chr1:35972213:-	ZMYM4	40194	chr1:35835630:+	ONLY_REF_SPLICE	NO	54	47	0.04	0.04	0.0068	0.0068	GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Artery_-_Tibial=1},LOCAL_INVERSION:-:+:[11432],KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4	U118MG_CENTRAL_NERVOUS_SYSTEM	0.04	0.04	0.0136	TRUE	0	0	0	1	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	KIF2C--PITHD1	1	1	KIF2C	2190	chr1:45206679:+	PITHD1	21577	chr1:24105928:+	ONLY_REF_SPLICE	YES	286	73	0.01	0.03	0.0068	0.0068	KIF2C->chr1:45205490-45233439:+,kinesin_family_member_2C,PITHD1->PITH_domain_containing_1,chr1:24104895-24114722:+	U118MG_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0136	FALSE	0	0	0	1	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	LINC00355--MYH9	1	1	LINC00355	5042	chr13:64576518:-	MYH9	31204	chr22:36701148:-	ONLY_REF_SPLICE	NO	4	912	0.33	0	0.0068	0.0068	LINC00355->chr13:64560504-64650144:-,long_intergenic_non-protein_coding_RNA_355,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	U118MG_CENTRAL_NERVOUS_SYSTEM	0	0.33	0.0136	FALSE	0	0	0	1	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	RP11-344E13.3--UBBP4	1	1	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0068	0.0068	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	U118MG_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.0136	TRUE	23	13	0	54	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	SLC36A4--CEP57	1	1	SLC36A4	2897	chr11:92918857:-	CEP57	39681	chr11:95562351:+	ONLY_REF_SPLICE	NO	61	112	0.03	0.02	0.0068	0.0068	SLC36A4->chr11:92877341-92931130:-,solute_carrier_family_36_member_4,CEP57->centrosomal_protein_57,chr11:95523129-95565857:+	U118MG_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.0136	TRUE	0	0	0	1	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	SUN1--HEATR2	1	1	SUN1	31224	chr7:927156:+	HEATR2	45372	chr7:794226:+	ONLY_REF_SPLICE	NO	112	28	0.02	0.07	0.0068	0.0068	LOCAL_REARRANGEMENT:+:[26338],SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+,HEATR2->chr7:766338-829190:+	U118MG_CENTRAL_NERVOUS_SYSTEM	0.02	0.07	0.0136	TRUE	0	0	0	1	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	1	1	TIMM23	5841	chr10:51610393:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	212	4	0.01	0.33	0.0068	0.0068	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	U118MG_CENTRAL_NERVOUS_SYSTEM	0.01	0.33	0.0136	FALSE	1	12	0	11	0	FALSE	ACH-000040
U118MG_CENTRAL_NERVOUS_SYSTEM	VAPA--RAB31	1	1	VAPA	1334	chr18:9914332:+	RAB31	35016	chr18:9845579:+	ONLY_REF_SPLICE	YES	217	377	0.01	0.01	0.0068	0.0068	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Adrenal_Gland=1,Whole_Blood=1},{Klijn_CCL:Lung=1,Head-Neck=1},LOCAL_REARRANGEMENT:+:[51451],VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+	U118MG_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0136	FALSE	3	3	0	4	0	FALSE	ACH-000040
ZR7530_BREAST	USP32--CWC25	1273	255	USP32	4918	chr17:58422842:-	CWC25	49141	chr17:36971350:-	ONLY_REF_SPLICE	YES	35	151	0.98	0.91	15.5917	3.1232	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,CWC25->CWC25_spliceosome-associated_protein_homolog,chr17:36956687-36981734:-	ZR7530_BREAST	0.91	0.98	18.7149	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	DDX5--DEPTOR	580	432	DDX5	3124	chr17:62502194:-	DEPTOR	13837	chr8:120940640:+	ONLY_REF_SPLICE	YES	895	247	0.53	0.8	7.1038	5.2911	{Klijn_CCL:Breast=1},DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	ZR7530_BREAST	0.53	0.8	12.3949	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PRKDC--RP11-434I12.3	393	141	PRKDC	57477	chr8:48746757:-	RP11-434I12.3	90060	chr8:74274558:+	ONLY_REF_SPLICE	YES	56	2	0.91	1	4.8135	1.727	PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,RP11-434I12.3->chr8:74271148-74275023:+	ZR7530_BREAST	0.91	1	6.5405	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	TAOK1--PCGF2	215	76	TAOK1	1561	chr17:27718042:+	PCGF2	43636	chr17:36896695:-	ONLY_REF_SPLICE	YES	46	33	0.86	0.9	2.6333	0.9308	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2	ZR7530_BREAST	0.86	0.9	3.5641	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	BCAS3--HOXB9	175	92	BCAS3	11036	chr17:58885437:+	HOXB9	61254	chr17:46700497:-	ONLY_REF_SPLICE	YES	13	0	0.95	1	2.1434	1.1268	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,HOXB9->chr17:46698518-46703839:-,homeobox_B9	ZR7530_BREAST	0.95	1	3.2702	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	MT-ND5--MT-ATP8	149	4	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4115	5	0.04	0.97	1.825	0.049	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ZR7530_BREAST	0.04	0.97	1.874	FALSE	43	37	8	105	0	FALSE	ACH-000828
ZR7530_BREAST	PLEC--ENPP2	133	47	PLEC	2231	chr8:145049345:-	ENPP2	43843	chr8:120633759:-	ONLY_REF_SPLICE	YES	75	0	0.71	1	1.629	0.5757	PLEC->chr8:144989321-145050902:-,plectin,ENPP2->Oncogene{Bushman},chr8:120569326-120685693:-,ectonucleotide_pyrophosphatase/phosphodiesterase_2	ZR7530_BREAST	0.71	1	2.2047	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PPM1D--TRAPPC9	110	40	PPM1D	5213	chr17:58711338:+	TRAPPC9	74739	chr8:140744445:-	ONLY_REF_SPLICE	YES	344	73	0.3	0.67	1.3473	0.4899	{Klijn_CCL:Breast=1},PPM1D->Oncogene{Bushman},chr17:58677544-58741849:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1D,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	ZR7530_BREAST	0.3	0.67	1.8372	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	TIMM23B--LINC00843	115	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4085	0.2327	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ZR7530_BREAST	1	1	1.6412	TRUE	508	994	45	981	0	FALSE	ACH-000828
ZR7530_BREAST	USP32--CWC25	41	263	USP32	4918	chr17:58422842:-	CWC25	48497	chr17:36971994:-	ONLY_REF_SPLICE	YES	35	153	0.9	0.67	0.5022	3.2212	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,CWC25->CWC25_spliceosome-associated_protein_homolog,chr17:36956687-36981734:-	ZR7530_BREAST	0.67	0.9	3.7234	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	HYLS1--TIMM23	93	5	HYLS1	3110	chr11:125757660:+	TIMM23	18989	chr10:51592619:-	ONLY_REF_SPLICE	YES	1	141	0.99	0.41	1.1391	0.0612	HYLS1->chr11:125753509-125770543:+,hydrolethalus_syndrome_1,TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23	ZR7530_BREAST	0.41	0.99	1.2003	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	TRPS1--LASP1	75	46	TRPS1	10091	chr8:116631359:-	LASP1	30290	chr17:37034339:+	ONLY_REF_SPLICE	YES	168	1760	0.42	0.06	0.9186	0.5634	{Klijn_CCL:Breast=1},TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+	ZR7530_BREAST	0.06	0.42	1.482	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	TIMM23--RP11-464F9.1	74	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	141	6	0.35	0.93	0.9064	0.0367	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ZR7530_BREAST	0.35	0.93	0.9431	TRUE	519	3926	326	965	0	FALSE	ACH-000828
ZR7530_BREAST	CENPO--RAB10	67	16	CENPO	3000	chr2:25022713:+	RAB10	16251	chr2:26321531:+	ONLY_REF_SPLICE	YES	13	101	0.86	0.45	0.8206	0.196	CENPO->centromere_protein_O,chr2:25016005-25045245:+,RAB10->RAB10,_member_RAS_oncogene_family,chr2:26256976-26360323:+	ZR7530_BREAST	0.45	0.86	1.0166	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	DDX5--NPEPPS	48	44	DDX5	3124	chr17:62502194:-	NPEPPS	18498	chr17:45646783:+	ONLY_REF_SPLICE	YES	895	199	0.09	0.32	0.5879	0.5389	DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-,NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+	ZR7530_BREAST	0.09	0.32	1.1268	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PRKDC--RP11-434I12.3	17	144	PRKDC	57477	chr8:48746757:-	RP11-434I12.3	88938	chr8:74271341:+	INCL_NON_REF_SPLICE	YES	56	1	0.74	0.99	0.2082	1.7637	PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,RP11-434I12.3->chr8:74271148-74275023:+	ZR7530_BREAST	0.74	0.99	1.9719	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PPP1R16A--RP11-152P17.2	50	9	PPP1R16A	1159	chr8:145703510:+	RP11-152P17.2	16346	chr8:106939945:-	ONLY_REF_SPLICE	YES	5	1	0.92	0.98	0.6124	0.1102	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,RP11-152P17.2->chr8:106792474-107072752:-	ZR7530_BREAST	0.92	0.98	0.7226	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PDP2--RNF213	32	4	PDP2	2331	chr16:66914543:+	RNF213	53687	chr17:78324101:+	ONLY_REF_SPLICE	YES	3	17	0.92	0.68	0.3919	0.049	PDP2->chr16:66912492-66929657:+,pyruvate_dehyrogenase_phosphatase_catalytic_subunit_2,RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213	ZR7530_BREAST	0.68	0.92	0.4409	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	SRCIN1--RP11-1407O15.2	28	8	SRCIN1	1298	chr17:36761886:-	RP11-1407O15.2	37490	chr17:36375177:-	INCL_NON_REF_SPLICE	YES	2	439	0.95	0.08	0.3429	0.098	SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-,RP11-1407O15.2->chr17:36337717-36421858:-	ZR7530_BREAST	0.08	0.95	0.4409	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	ZMYM4--OPRD1	28	5	ZMYM4	24352	chr1:35873760:+	OPRD1	35799	chr1:29185466:+	ONLY_REF_SPLICE	YES	23	0	0.59	1	0.3429	0.0612	ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4,OPRD1->chr1:29138654-29190208:+,opioid_receptor_delta_1	ZR7530_BREAST	0.59	1	0.4041	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	MT-ND6--MT-TE	26	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3184	0.0367	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ZR7530_BREAST	1	1	0.3551	FALSE	499	1288	110	792	0	FALSE	ACH-000828
ZR7530_BREAST	MT-TA--MT-TC	26	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3184	0.0367	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ZR7530_BREAST	1	1	0.3551	FALSE	462	80	0	856	0	FALSE	ACH-000828
ZR7530_BREAST	OR51S1--TP53I11	26	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3184	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	ZR7530_BREAST	1	1	0.3184	TRUE	402	216	10	229	0	FALSE	ACH-000828
ZR7530_BREAST	RP11-152P17.2--SLC13A2	26	0	RP11-152P17.2	3511	chr8:106939879:-	SLC13A2	18114	chr17:26816232:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3184	0	RP11-152P17.2->chr8:106792474-107072752:-,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	ZR7530_BREAST	1	1	0.3184	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	TAOK1--RP11-1018N14.1	22	13	TAOK1	14861	chr17:27829741:+	RP11-1018N14.1	42702	chr17:49401093:-	ONLY_REF_SPLICE	YES	20	0	0.64	1	0.2695	0.1592	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,RP11-1018N14.1->chr17:49389970-49412526:-	ZR7530_BREAST	0.64	1	0.4287	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	RP11-123O10.4--GRIP1	23	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.2817	0.0367	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ZR7530_BREAST	0.96	1	0.3184	FALSE	416	2512	207	587	0	FALSE	ACH-000828
ZR7530_BREAST	PPP1R16A--RP11-152P17.2	19	17	PPP1R16A	1554	chr8:145703905:+	RP11-152P17.2	16346	chr8:106939945:-	ONLY_REF_SPLICE	YES	26	1	0.58	0.97	0.2327	0.2082	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,RP11-152P17.2->chr8:106792474-107072752:-	ZR7530_BREAST	0.58	0.97	0.4409	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	USP32--CWC25	3	73	USP32	4918	chr17:58422842:-	CWC25	49317	chr17:36971174:-	INCL_NON_REF_SPLICE	YES	35	430	0.68	0.15	0.0367	0.8941	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,CWC25->CWC25_spliceosome-associated_protein_homolog,chr17:36956687-36981734:-	ZR7530_BREAST	0.15	0.68	0.9308	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	FASN--MT-ND2	18	1	FASN	17402	chr17:80038591:-	MT-ND2	23619	chrM:5309:+	INCL_NON_REF_SPLICE	YES	1379	6177	0.01	0	0.2205	0.0122	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	ZR7530_BREAST	0	0.01	0.2327	FALSE	5	0	0	5	0	FALSE	ACH-000828
ZR7530_BREAST	NFE2L1--TOP1MT	16	9	NFE2L1	8029	chr17:46134864:+	TOP1MT	25349	chr8:144413509:-	ONLY_REF_SPLICE	YES	3693	43	0.01	0.37	0.196	0.1102	NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,TOP1MT->chr8:144386554-144442149:-,topoisomerase_(DNA)_I,_mitochondrial	ZR7530_BREAST	0.01	0.37	0.3062	TRUE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ND5--MT-ATP8	16	3	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5163	43	0	0.31	0.196	0.0367	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ZR7530_BREAST	0	0.31	0.2327	FALSE	43	37	8	105	0	FALSE	ACH-000828
ZR7530_BREAST	PHF20L1--RP11-369K17.1	15	5	PHF20L1	21076	chr8:133829790:+	RP11-369K17.1	41311	chr8:122055623:+	ONLY_REF_SPLICE	YES	307	0	0.06	1	0.1837	0.0612	PHF20L1->PHD_finger_protein_20-like_1,chr8:133787618-133861052:+,RP11-369K17.1->chr8:121925305-122131994:+	ZR7530_BREAST	0.06	1	0.2449	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	MT-ND6--MT-TE	12	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.147	0.1837	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ZR7530_BREAST	1	1	0.3307	FALSE	499	1288	110	792	0	FALSE	ACH-000828
ZR7530_BREAST	PLEC--ENPP2	3	49	PLEC	3358	chr8:145047571:-	ENPP2	43843	chr8:120633759:-	ONLY_REF_SPLICE	NO	84	0	0.38	1	0.0367	0.6002	PLEC->chr8:144989321-145050902:-,plectin,ENPP2->Oncogene{Bushman},chr8:120569326-120685693:-,ectonucleotide_pyrophosphatase/phosphodiesterase_2	ZR7530_BREAST	0.38	1	0.6369	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	USP32--SMURF2	14	3	USP32	4918	chr17:58422842:-	SMURF2	48330	chr17:62602758:-	ONLY_REF_SPLICE	YES	35	0	0.33	1	0.1715	0.0367	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-	ZR7530_BREAST	0.33	1	0.2082	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	HSP90AB1--MT-RNR2	14	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2940	0	0.01	1	0.1715	0.0122	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ZR7530_BREAST	0.01	1	0.1837	FALSE	13	9	0	364	0	FALSE	ACH-000828
ZR7530_BREAST	TAOK1--RP11-1018N14.1	12	7	TAOK1	14861	chr17:27829741:+	RP11-1018N14.1	43802	chr17:49399037:-	ONLY_REF_SPLICE	YES	20	0	0.49	1	0.147	0.0857	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,RP11-1018N14.1->chr17:49389970-49412526:-	ZR7530_BREAST	0.49	1	0.2327	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	ADCY3--RP5-1061H20.3	13	2	ADCY3	18825	chr2:25047271:-	RP5-1061H20.3	27274	chr1:229407117:-	INCL_NON_REF_SPLICE	YES	13	0	0.54	1	0.1592	0.0245	ADCY3->adenylate_cyclase_3,chr2:25042038-25142708:-,RP5-1061H20.3->chr1:229406674-229407346:-	ZR7530_BREAST	0.54	1	0.1837	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	MT-ATP6--MT-CO2	12	1	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	35	0	0.27	1	0.147	0.0122	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ZR7530_BREAST	0.27	1	0.1592	FALSE	59	21	0	114	0	FALSE	ACH-000828
ZR7530_BREAST	USP32--CWC25	1	44	USP32	4918	chr17:58422842:-	CWC25	50378	chr17:36969117:-	ONLY_REF_SPLICE	YES	35	706	0.56	0.06	0.0122	0.5389	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,CWC25->CWC25_spliceosome-associated_protein_homolog,chr17:36956687-36981734:-	ZR7530_BREAST	0.06	0.56	0.5511	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	CBX1--PCGF2	11	3	CBX1	1254	chr17:46178630:-	PCGF2	17003	chr17:36896695:-	ONLY_REF_SPLICE	YES	2918	33	0	0.3	0.1347	0.0367	CBX1->chr17:46147414-46178883:-,chromobox_1,PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2	ZR7530_BREAST	0	0.3	0.1714	TRUE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	DDX5--DEPTOR	11	3	DDX5	2445	chr17:62502873:-	DEPTOR	13837	chr8:120940640:+	ONLY_REF_SPLICE	YES	45	247	0.24	0.05	0.1347	0.0367	{Klijn_CCL:Breast=1},DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	ZR7530_BREAST	0.05	0.24	0.1714	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	SRCIN1--RP11-1407O15.2	11	2	SRCIN1	1247	chr17:36761937:-	RP11-1407O15.2	37490	chr17:36375177:-	ONLY_REF_SPLICE	YES	1	439	0.93	0.03	0.1347	0.0245	SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-,RP11-1407O15.2->chr17:36337717-36421858:-	ZR7530_BREAST	0.03	0.93	0.1592	TRUE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	HSP90AB1--MT-RNR2	11	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2928	0	0	1	0.1347	0.0122	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ZR7530_BREAST	0	1	0.1469	FALSE	13	9	0	364	0	FALSE	ACH-000828
ZR7530_BREAST	MIPEPP3--ABHD12	11	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1347	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	ZR7530_BREAST	1	1	0.1347	TRUE	64	202	9	44	0	FALSE	ACH-000828
ZR7530_BREAST	TAOK1--RP11-1018N14.1	10	4	TAOK1	14861	chr17:27829741:+	RP11-1018N14.1	44893	chr17:49390145:-	ONLY_REF_SPLICE	YES	20	0	0.41	1	0.1225	0.049	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,RP11-1018N14.1->chr17:49389970-49412526:-	ZR7530_BREAST	0.41	1	0.1715	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	MT-ND6--MT-TE	10	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1225	0.0367	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ZR7530_BREAST	1	1	0.1592	FALSE	499	1288	110	792	0	FALSE	ACH-000828
ZR7530_BREAST	MUC2--MT-RNR2	10	3	MUC2	18567	chr11:1093441:+	MT-RNR2	32359	chrM:1682:+	INCL_NON_REF_SPLICE	YES	275	0	0.05	1	0.1225	0.0367	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ZR7530_BREAST	0.05	1	0.1592	FALSE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	RNF213--TACC1	10	3	RNF213	38691	chr17:78322086:+	TACC1	89334	chr8:38646222:+	ONLY_REF_SPLICE	YES	29	12	0.31	0.52	0.1225	0.0367	RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	ZR7530_BREAST	0.31	0.52	0.1592	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PGAP3--NOV	7	13	PGAP3	4973	chr17:37840850:-	NOV	13754	chr8:120428626:+	INCL_NON_REF_SPLICE	YES	1638	0	0.01	1	0.0857	0.1592	PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,NOV->Oncogene{Bushman},chr8:120428546-120436593:+,nephroblastoma_overexpressed	ZR7530_BREAST	0.01	1	0.2449	TRUE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ND5--MT-ATP8	7	12	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0857	0.147	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ZR7530_BREAST	1	1	0.2327	FALSE	43	37	8	105	0	FALSE	ACH-000828
ZR7530_BREAST	RP11-96H19.1--RP11-446N19.1	10	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1225	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ZR7530_BREAST	1	1	0.1225	FALSE	515	4851	409	746	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ND5--MT-ATP8	6	15	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0735	0.1837	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ZR7530_BREAST	1	1	0.2572	FALSE	43	37	8	105	0	FALSE	ACH-000828
ZR7530_BREAST	NPDC1--SCGB2A2	9	2	NPDC1	4655	chr9:139935534:-	SCGB2A2	9271	chr11:62037630:+	INCL_NON_REF_SPLICE	YES	288	0	0.04	1	0.1102	0.0245	NPDC1->chr9:139933922-139940655:-,neural_proliferation,_differentiation_and_control,_1,SCGB2A2->chr11:62037627-62040628:+,secretoglobin_family_2A_member_2	ZR7530_BREAST	0.04	1	0.1347	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	RNF213--TACC1	7	10	RNF213	38691	chr17:78322086:+	TACC1	82693	chr8:38599869:+	ONLY_REF_SPLICE	YES	29	0	0.37	1	0.0857	0.1225	RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	ZR7530_BREAST	0.37	1	0.2082	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	MT-ND3--MT-ATP8	9	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1102	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ZR7530_BREAST	1	1	0.1102	FALSE	351	233	23	137	0	FALSE	ACH-000828
ZR7530_BREAST	TAOK1--RP11-1018N14.1	5	13	TAOK1	14861	chr17:27829741:+	RP11-1018N14.1	40583	chr17:49411479:-	ONLY_REF_SPLICE	YES	20	1	0.47	0.95	0.0612	0.1592	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,RP11-1018N14.1->chr17:49389970-49412526:-	ZR7530_BREAST	0.47	0.95	0.2204	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PGAP3--NOV	4	16	PGAP3	7178	chr17:37830870:-	NOV	13754	chr8:120428626:+	INCL_NON_REF_SPLICE	YES	1580	0	0.01	1	0.049	0.196	PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,NOV->Oncogene{Bushman},chr8:120428546-120436593:+,nephroblastoma_overexpressed	ZR7530_BREAST	0.01	1	0.245	TRUE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	RP11-353N4.6--SEC22B	7	4	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	1	394	0.92	0.03	0.0857	0.049	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	ZR7530_BREAST	0.03	0.92	0.1347	TRUE	49	42	7	43	0	FALSE	ACH-000828
ZR7530_BREAST	PPP1R16A--RP11-152P17.2	3	18	PPP1R16A	1585	chr8:145703936:+	RP11-152P17.2	16346	chr8:106939945:-	INCL_NON_REF_SPLICE	YES	33	1	0.39	0.95	0.0367	0.2205	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,RP11-152P17.2->chr8:106792474-107072752:-	ZR7530_BREAST	0.39	0.95	0.2572	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	MT-ND5--MT-ATP8	7	1	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	4911	1	0	0.89	0.0857	0.0122	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ZR7530_BREAST	0	0.89	0.0979	FALSE	41	30	6	102	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ATP6--MT-CO1	6	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13171	22950	0	0	0.0735	0.049	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ZR7530_BREAST	0	0	0.1225	FALSE	183	104	9	328	0	FALSE	ACH-000828
ZR7530_BREAST	PPP1R16A--SLC13A2	4	12	PPP1R16A	1159	chr8:145703510:+	SLC13A2	16565	chr17:26816232:+	ONLY_REF_SPLICE	YES	5	4	0.76	0.8	0.049	0.147	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	ZR7530_BREAST	0.76	0.8	0.196	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	VTI1A--RP11-57H14.3	7	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0857	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	ZR7530_BREAST	1	1	0.0857	FALSE	272	151	14	158	0	FALSE	ACH-000828
ZR7530_BREAST	CENPO--RAB10	6	3	CENPO	1830	chr2:25016834:+	RAB10	16251	chr2:26321531:+	ONLY_REF_SPLICE	YES	16	101	0.36	0.08	0.0735	0.0367	CENPO->centromere_protein_O,chr2:25016005-25045245:+,RAB10->RAB10,_member_RAS_oncogene_family,chr2:26256976-26360323:+	ZR7530_BREAST	0.08	0.36	0.1102	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	MT-ATP6--MT-CO1	6	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10641	23006	0	0	0.0735	0.0367	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ZR7530_BREAST	0	0	0.1102	FALSE	183	104	9	328	0	FALSE	ACH-000828
ZR7530_BREAST	MT-TA--MT-TC	6	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0735	0.0367	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ZR7530_BREAST	1	1	0.1102	FALSE	462	80	0	856	0	FALSE	ACH-000828
ZR7530_BREAST	NFE2L1--TOP1MT	4	10	NFE2L1	10305	chr17:46137140:+	TOP1MT	25349	chr8:144413509:-	INCL_NON_REF_SPLICE	YES	1719	43	0.01	0.25	0.049	0.1225	NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,TOP1MT->chr8:144386554-144442149:-,topoisomerase_(DNA)_I,_mitochondrial	ZR7530_BREAST	0.01	0.25	0.1715	TRUE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	PAK4--MT-ND4L	6	2	PAK4	12918	chr19:39669187:+	MT-ND4L	20189	chrM:10471:+	INCL_NON_REF_SPLICE	YES	343	0	0.02	1	0.0735	0.0245	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ZR7530_BREAST	0.02	1	0.098	FALSE	0	0	0	7	0	FALSE	ACH-000828
ZR7530_BREAST	PDP2--RNF213	4	10	PDP2	2447	chr16:66914659:+	RNF213	53687	chr17:78324101:+	ONLY_REF_SPLICE	YES	11	17	0.56	0.45	0.049	0.1225	PDP2->chr16:66912492-66929657:+,pyruvate_dehyrogenase_phosphatase_catalytic_subunit_2,RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213	ZR7530_BREAST	0.45	0.56	0.1715	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	MT-ND5--MT-ATP8	4	9	MT-ND5	2583	chrM:13919:+	MT-ATP8	5869	chrM:8422:+	INCL_NON_REF_SPLICE	YES	2647	0	0	1	0.049	0.1102	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ZR7530_BREAST	0	1	0.1592	FALSE	43	37	8	105	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ND6--MT-TE	4	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0.1102	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ZR7530_BREAST	1	1	0.1592	FALSE	499	1288	110	792	0	FALSE	ACH-000828
ZR7530_BREAST	NPDC1--SCGB2A2	5	5	NPDC1	4673	chr9:139935516:-	SCGB2A2	9291	chr11:62037650:+	INCL_NON_REF_SPLICE	YES	302	0	0.03	1	0.0612	0.0612	NPDC1->chr9:139933922-139940655:-,neural_proliferation,_differentiation_and_control,_1,SCGB2A2->chr11:62037627-62040628:+,secretoglobin_family_2A_member_2	ZR7530_BREAST	0.03	1	0.1224	TRUE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	PPP1R16A--SLC13A2	3	13	PPP1R16A	1159	chr8:145703510:+	SLC13A2	15424	chr17:26814428:+	ONLY_REF_SPLICE	YES	5	5	0.76	0.76	0.0367	0.1592	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	ZR7530_BREAST	0.76	0.76	0.1959	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0735	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ZR7530_BREAST	1	1	0.0735	FALSE	462	80	0	856	0	FALSE	ACH-000828
ZR7530_BREAST	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0735	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ZR7530_BREAST	1	1	0.0735	FALSE	292	1546	117	613	0	FALSE	ACH-000828
ZR7530_BREAST	RAB11FIP3--RP11-554D15.3	6	0	RAB11FIP3	7902	chr16:539000:+	RP11-554D15.3	27995	chr6:75240313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0735	0	RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+,RP11-554D15.3->chr6:75239964-75443995:-	ZR7530_BREAST	1	1	0.0735	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	SCGB2A2--MT-CO3	6	0	SCGB2A2	1091	chr11:62037717:+	MT-CO3	7062	chrM:9266:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0735	0	SCGB2A2->chr11:62037627-62040628:+,secretoglobin_family_2A_member_2,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	ZR7530_BREAST	1	1	0.0735	FALSE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	TAOK1--PCGF2	1	20	TAOK1	1125	chr17:27717606:+	PCGF2	43636	chr17:36896695:-	ONLY_REF_SPLICE	YES	89	33	0.19	0.39	0.0122	0.245	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2	ZR7530_BREAST	0.19	0.39	0.2572	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	FSIP1--RP11-624L4.1	5	3	FSIP1	15137	chr15:39893046:-	RP11-624L4.1	27601	chr15:39363809:-	ONLY_REF_SPLICE	YES	41	0	0.16	1	0.0612	0.0367	GTEx_FI:{Breast=[count:2=pct:1.8],Brain=[count:1=pct:0.2]},FSIP1->chr15:39892232-40075031:-,fibrous_sheath_interacting_protein_1,RP11-624L4.1->chr15:39157523-39719396:-	ZR7530_BREAST	0.16	1	0.0979	TRUE	3	181	3	5	0	FALSE	ACH-000828
ZR7530_BREAST	PLEC--ENPP2	3	11	PLEC	2231	chr8:145049345:-	ENPP2	44969	chr8:120631544:-	ONLY_REF_SPLICE	YES	75	19	0.16	0.42	0.0367	0.1347	PLEC->chr8:144989321-145050902:-,plectin,ENPP2->Oncogene{Bushman},chr8:120569326-120685693:-,ectonucleotide_pyrophosphatase/phosphodiesterase_2	ZR7530_BREAST	0.16	0.42	0.1714	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PPP1R16A--RP11-152P17.2	5	2	PPP1R16A	1159	chr8:145703510:+	RP11-152P17.2	18487	chr8:106810670:-	ONLY_REF_SPLICE	YES	5	1	0.58	0.88	0.0612	0.0245	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,RP11-152P17.2->chr8:106792474-107072752:-	ZR7530_BREAST	0.58	0.88	0.0857	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	ARSG--CEP112	5	1	ARSG	18733	chr17:66397591:+	CEP112	52883	chr17:63848152:-	ONLY_REF_SPLICE	YES	11	1	0.35	0.86	0.0612	0.0122	ARSG->arylsulfatase_G,chr17:66255323-66418872:+,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	ZR7530_BREAST	0.35	0.86	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	MT-ATP6--MT-CO2	4	4	MT-ATP6	1223	chrM:8749:+	MT-CO2	4767	chrM:7671:+	INCL_NON_REF_SPLICE	YES	53	0	0.13	1	0.049	0.049	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ZR7530_BREAST	0.13	1	0.098	FALSE	59	21	0	114	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ATP6--MT-CO2	4	4	MT-ATP6	1249	chrM:8775:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	58	0	0.12	1	0.049	0.049	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ZR7530_BREAST	0.12	1	0.098	FALSE	59	21	0	114	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ND5--MT-ATP8	4	4	MT-ND5	2807	chrM:14143:+	MT-ATP8	5935	chrM:8488:+	INCL_NON_REF_SPLICE	YES	0	905	1	0.01	0.049	0.049	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ZR7530_BREAST	0.01	1	0.098	FALSE	43	37	8	105	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0612	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ZR7530_BREAST	1	1	0.0612	FALSE	499	1288	110	792	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ND5--MT-ATP8	3	7	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	3044	0	0	1	0.0367	0.0857	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ZR7530_BREAST	0	1	0.1224	FALSE	43	37	8	105	0	FALSE	ACH-000828
ZR7530_BREAST	PCGF2--ZNF652	4	3	PCGF2	2939	chr17:36904132:-	ZNF652	16154	chr17:47395345:-	ONLY_REF_SPLICE	YES	26	3	0.21	0.7	0.049	0.0367	PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2,ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652	ZR7530_BREAST	0.21	0.7	0.0857	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PCGF2--ZNF652	4	2	PCGF2	2622	chr17:36904449:-	ZNF652	16154	chr17:47395345:-	ONLY_REF_SPLICE	YES	4	3	0.6	0.67	0.049	0.0245	PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2,ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652	ZR7530_BREAST	0.6	0.67	0.0735	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	USP32--SMURF2	4	2	USP32	4918	chr17:58422842:-	SMURF2	49369	chr17:62594608:-	ONLY_REF_SPLICE	YES	35	14	0.15	0.3	0.049	0.0245	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-	ZR7530_BREAST	0.15	0.3	0.0735	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	HYLS1--TIMM23	3	5	HYLS1	3110	chr11:125757660:+	TIMM23	18147	chr10:51593461:-	INCL_NON_REF_SPLICE	YES	1	159	0.89	0.05	0.0367	0.0612	HYLS1->chr11:125753509-125770543:+,hydrolethalus_syndrome_1,TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23	ZR7530_BREAST	0.05	0.89	0.0979	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	MT-ATP6--MT-CO1	3	5	MT-ATP6	1537	chrM:9063:+	MT-CO1	5319	chrM:6541:+	INCL_NON_REF_SPLICE	YES	5026	22601	0	0	0.0367	0.0612	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ZR7530_BREAST	0	0	0.0979	FALSE	183	104	9	328	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ATP6--MT-CO2	4	1	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	35	0	0.12	1	0.049	0.0122	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ZR7530_BREAST	0.12	1	0.0612	FALSE	59	21	0	114	0	FALSE	ACH-000828
ZR7530_BREAST	CREB3L1--MT-ND4L	4	0	CREB3L1	7366	chr11:46332730:+	MT-ND4L	17448	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0	CREB3L1->Oncogene{Bushman},cAMP_responsive_element_binding_protein_3-like_1,chr11:46299212-46342972:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ZR7530_BREAST	1	1	0.049	FALSE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ATP6--MT-CO2	4	0	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ZR7530_BREAST	1	1	0.049	FALSE	59	21	0	114	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ND5--MT-ATP8	3	4	MT-ND5	2514	chrM:13850:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2661	43	0	0.14	0.0367	0.049	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ZR7530_BREAST	0	0.14	0.0857	FALSE	43	37	8	105	0	FALSE	ACH-000828
ZR7530_BREAST	SCGB2A2--MT-CO3	4	0	SCGB2A2	1109	chr11:62037735:+	MT-CO3	7078	chrM:9282:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0	SCGB2A2->chr11:62037627-62040628:+,secretoglobin_family_2A_member_2,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	ZR7530_BREAST	1	1	0.049	FALSE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	PPP1R16A--RP11-152P17.2	2	7	PPP1R16A	1554	chr8:145703905:+	RP11-152P17.2	18487	chr8:106810670:-	ONLY_REF_SPLICE	YES	26	1	0.26	0.9	0.0245	0.0857	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,RP11-152P17.2->chr8:106792474-107072752:-	ZR7530_BREAST	0.26	0.9	0.1102	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	MT-ATP6--MT-CO1	3	2	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	10112	21527	0	0	0.0367	0.0245	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ZR7530_BREAST	0	0	0.0612	FALSE	183	104	9	328	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ATP6--MT-CO1	3	2	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10511	22950	0	0	0.0367	0.0245	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ZR7530_BREAST	0	0	0.0612	FALSE	183	104	9	328	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ATP6--MT-CO1	3	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	10597	22578	0	0	0.0367	0.0245	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ZR7530_BREAST	0	0	0.0612	FALSE	183	104	9	328	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ND5--MT-ATP8	3	2	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	2862	1097	0	0	0.0367	0.0245	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ZR7530_BREAST	0	0	0.0612	FALSE	43	37	8	105	0	FALSE	ACH-000828
ZR7530_BREAST	ZNF652--NDRG1	3	2	ZNF652	8960	chr17:47375708:-	NDRG1	24967	chr8:134296572:-	INCL_NON_REF_SPLICE	NO	126	156	0.04	0.03	0.0367	0.0245	ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652,NDRG1->N-myc_downstream_regulated_1,Oncogene{Bushman},chr8:134249414-134314265:-	ZR7530_BREAST	0.03	0.04	0.0612	TRUE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	PDP2--RNF213	2	5	PDP2	2355	chr16:66914567:+	RNF213	53687	chr17:78324101:+	ONLY_REF_SPLICE	YES	9	17	0.44	0.29	0.0245	0.0612	PDP2->chr16:66912492-66929657:+,pyruvate_dehyrogenase_phosphatase_catalytic_subunit_2,RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213	ZR7530_BREAST	0.29	0.44	0.0857	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	SFPQ--SCGB2A2	3	1	SFPQ	1335	chr1:35658415:-	SCGB2A2	18973	chr11:62037675:+	INCL_NON_REF_SPLICE	YES	180	0	0.02	1	0.0367	0.0122	SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,SCGB2A2->chr11:62037627-62040628:+,secretoglobin_family_2A_member_2	ZR7530_BREAST	0.02	1	0.0489	TRUE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	TIAM1--NRIP1	3	1	TIAM1	2051	chr21:32931240:-	NRIP1	41915	chr21:16415895:-	ONLY_REF_SPLICE	YES	0	5	1	0.44	0.0367	0.0122	TIAM1->Oncogene{Bushman},T-cell_lymphoma_invasion_and_metastasis_1,chr21:32490734-32932290:-,NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1	ZR7530_BREAST	0.44	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	CISD3--IKZF3	3	0	CISD3	2205	chr17:36887692:+	IKZF3	11200	chr17:37949186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	CISD3->CDGSH_iron_sulfur_domain_3,chr17:36886488-36891297:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	ZR7530_BREAST	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	CMTM8--CMTM7	3	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	ZR7530_BREAST	1	1	0.0367	FALSE	118	557	29	88	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ATP6--MT-CO2	3	0	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ZR7530_BREAST	1	1	0.0367	FALSE	59	21	0	114	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ATP6--MT-CO2	3	0	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ZR7530_BREAST	1	1	0.0367	FALSE	59	21	0	114	0	FALSE	ACH-000828
ZR7530_BREAST	MT-ATP6--MT-CO2	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ZR7530_BREAST	1	1	0.0367	FALSE	59	21	0	114	0	FALSE	ACH-000828
ZR7530_BREAST	PCAT1--RP11-382A18.2	3	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	ZR7530_BREAST	1	1	0.0367	TRUE	4	84	1	46	0	FALSE	ACH-000828
ZR7530_BREAST	RP11-96H19.1--RP11-446N19.1	3	0	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ZR7530_BREAST	1	1	0.0367	FALSE	467	2173	244	435	0	FALSE	ACH-000828
ZR7530_BREAST	TMEM54--MT-CO2	3	0	TMEM54	2326	chr1:33363811:-	MT-CO2	8517	chrM:7597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	TMEM54->chr1:33360195-33367039:-,transmembrane_protein_54,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ZR7530_BREAST	1	1	0.0367	FALSE	0	0	0	10	0	FALSE	ACH-000828
ZR7530_BREAST	TRAPPC9--RP11-1079K10.3	3	0	TRAPPC9	3535	chr8:141460889:-	RP11-1079K10.3	69450	chr17:47441641:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,RP11-1079K10.3->chr17:47438527-47447360:+	ZR7530_BREAST	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	ZNF652--NDRG1	2	4	ZNF652	9200	chr17:47375468:-	NDRG1	24967	chr8:134296572:-	ONLY_REF_SPLICE	YES	90	156	0.06	0.04	0.0245	0.049	ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652,NDRG1->N-myc_downstream_regulated_1,Oncogene{Bushman},chr8:134249414-134314265:-	ZR7530_BREAST	0.04	0.06	0.0735	TRUE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	RNF152--RP11-879F14.1	2	2	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	10	1	0.29	0.8	0.0245	0.0245	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	ZR7530_BREAST	0.29	0.8	0.049	FALSE	275	472	65	43	0	FALSE	ACH-000828
ZR7530_BREAST	ZNF652--NDRG1	2	2	ZNF652	7381	chr17:47388674:-	NDRG1	24967	chr8:134296572:-	ONLY_REF_SPLICE	YES	108	156	0.04	0.03	0.0245	0.0245	ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652,NDRG1->N-myc_downstream_regulated_1,Oncogene{Bushman},chr8:134249414-134314265:-	ZR7530_BREAST	0.03	0.04	0.049	TRUE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0245	0.0122	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	ZR7530_BREAST	0.75	1	0.0367	FALSE	16	356	14	466	0	FALSE	ACH-000828
ZR7530_BREAST	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	4	1	0.43	0.0245	0.0122	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ZR7530_BREAST	0.43	1	0.0367	FALSE	93	270	15	244	0	FALSE	ACH-000828
ZR7530_BREAST	ZNF652--NDRG1	2	1	ZNF652	6766	chr17:47389289:-	NDRG1	24967	chr8:134296572:-	ONLY_REF_SPLICE	YES	138	156	0.02	0.02	0.0245	0.0122	ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652,NDRG1->N-myc_downstream_regulated_1,Oncogene{Bushman},chr8:134249414-134314265:-	ZR7530_BREAST	0.02	0.02	0.0367	TRUE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	APPBP2--PHF20L1	2	0	APPBP2	14268	chr17:58538024:-	PHF20L1	31137	chr8:133806656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-,PHF20L1->PHD_finger_protein_20-like_1,chr8:133787618-133861052:+	ZR7530_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	ARSG--CEP112	2	0	ARSG	15317	chr17:66381313:+	CEP112	52883	chr17:63848152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	ARSG->arylsulfatase_G,chr17:66255323-66418872:+,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	ZR7530_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ZR7530_BREAST	1	1	0.0245	FALSE	125	705	46	456	0	FALSE	ACH-000828
ZR7530_BREAST	NUCB2--ACTR6	2	0	NUCB2	17892	chr11:17331222:+	ACTR6	43610	chr12:100612193:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	NUCB2->chr11:17229700-17371521:+,nucleobindin_2,ACTR6->ARP6_actin-related_protein_6_homolog,chr12:100592900-100635643:+	ZR7530_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	RP11-152P17.2--SLC13A2	2	0	RP11-152P17.2	3511	chr8:106939879:-	SLC13A2	16973	chr17:26814428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	RP11-152P17.2->chr8:106792474-107072752:-,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	ZR7530_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ZR7530_BREAST	1	1	0.0245	FALSE	407	2205	196	549	0	FALSE	ACH-000828
ZR7530_BREAST	TRPS1--LASP1	1	4	TRPS1	10091	chr8:116631359:-	LASP1	35615	chr17:37070578:+	ONLY_REF_SPLICE	NO	168	1726	0.03	0	0.0122	0.049	{Klijn_CCL:Breast=1},TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+	ZR7530_BREAST	0	0.03	0.0612	FALSE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	RNF213--TACC1	1	3	RNF213	38691	chr17:78322086:+	TACC1	91645	chr8:38677040:+	ONLY_REF_SPLICE	NO	29	13	0.12	0.24	0.0122	0.0367	RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	ZR7530_BREAST	0.12	0.24	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	ZMYM4--OPRD1	1	3	ZMYM4	23200	chr1:35871069:+	OPRD1	35799	chr1:29185466:+	ONLY_REF_SPLICE	NO	36	0	0.1	1	0.0122	0.0367	ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4,OPRD1->chr1:29138654-29190208:+,opioid_receptor_delta_1	ZR7530_BREAST	0.1	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000828
ZR7530_BREAST	PGAP3--NOV	1	1	PGAP3	7178	chr17:37830870:-	NOV	14112	chr8:120428984:+	ONLY_REF_SPLICE	YES	1580	139	0	0.01	0.0122	0.0122	PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,NOV->Oncogene{Bushman},chr8:120428546-120436593:+,nephroblastoma_overexpressed	ZR7530_BREAST	0	0.01	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000828
ZR7530_BREAST	TULP4--RP11-732M18.3	1	1	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	16	1	0.11	0.67	0.0122	0.0122	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	ZR7530_BREAST	0.11	0.67	0.0244	TRUE	126	140	6	21	0	FALSE	ACH-000828
ZR7530_BREAST	ZFYVE21--KLC1	1	1	ZFYVE21	1250	chr14:104182316:+	KLC1	34861	chr14:104166992:+	ONLY_REF_SPLICE	YES	403	69	0	0.03	0.0122	0.0122	GTEx_FI:{Esophagus=[count:4=pct:1.0],Brain=[count:3=pct:0.5],Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Colon=[count:1=pct:0.5],Pituitary=[count:1=pct:1.9],Breast=[count:1=pct:0.9]},GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_REARRANGEMENT:+:[14179],ZFYVE21->chr14:104182067-104200005:+,zinc_finger_FYVE-type_containing_21,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	ZR7530_BREAST	0	0.03	0.0244	FALSE	10	10	1	10	0	FALSE	ACH-000828
NCIH841_LUNG	DPH1--CCDC42	451	1	DPH1	1121	chr17:1933524:+	CCDC42	18585	chr17:8638572:-	ONLY_REF_SPLICE	YES	11	3	0.98	0.99	2.3966	0.0053	DPH1->Oncogene{Bushman},chr17:1933404-1946724:+,diphthamide_biosynthesis_1,CCDC42->chr17:8633252-8648537:-,coiled-coil_domain_containing_42	NCIH841_LUNG	0.98	0.99	2.4019	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TN	164	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8715	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH841_LUNG	1	1	0.8715	FALSE	369	2501	205	193	0	FALSE	ACH-000292
NCIH841_LUNG	AP003900.6--AP000345.1	137	12	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	7	0	0.96	1	0.728	0.0638	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH841_LUNG	0.96	1	0.7918	TRUE	4	17	0	31	0	FALSE	ACH-000292
NCIH841_LUNG	PELP1--RAP1GAP2	122	56	PELP1	8027	chr17:4578104:-	RAP1GAP2	32739	chr17:2921355:+	ONLY_REF_SPLICE	YES	308	38	0.37	0.82	0.6483	0.2976	PELP1->chr17:4574679-4607632:-,proline,_glutamate_and_leucine_rich_protein_1,RAP1GAP2->RAP1_GTPase_activating_protein_2,chr17:2680350-2941033:+	NCIH841_LUNG	0.37	0.82	0.9459	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	TIMM23B--LINC00843	107	55	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5686	0.2923	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH841_LUNG	1	1	0.8609	TRUE	508	994	45	981	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TC	112	21	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5952	0.1116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH841_LUNG	1	1	0.7068	FALSE	462	80	0	856	0	FALSE	ACH-000292
NCIH841_LUNG	SPTBN1--SLC9A3R2	95	70	SPTBN1	4816	chr2:54753703:+	SLC9A3R2	59067	chr16:2086729:+	ONLY_REF_SPLICE	YES	306	135	0.35	0.55	0.5048	0.372	GTEx&tcga_normals:1/3694=0.03%,SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1,SLC9A3R2->SLC9A3_regulator_2,chr16:2075357-2089027:+	NCIH841_LUNG	0.35	0.55	0.8768	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	RP11-444D3.1--SOX5	85	35	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	25	1	0.83	0.4517	0.186	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH841_LUNG	0.83	1	0.6377	TRUE	477	1352	189	275	0	FALSE	ACH-000292
NCIH841_LUNG	LSMD1--VPS53	72	53	LSMD1	2175	chr17:7786553:-	VPS53	21773	chr17:565135:-	ONLY_REF_SPLICE	YES	54	63	0.7	0.66	0.3826	0.2816	LSMD1->chr17:7760003-7788556:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	NCIH841_LUNG	0.66	0.7	0.6642	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	TIMM23--RP11-464F9.1	76	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	800	9	0.09	0.9	0.4039	0.0319	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH841_LUNG	0.09	0.9	0.4358	TRUE	519	3926	326	965	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	47	49	RP5-857K21.11	1107	chr1:569862:+	MTATP6P1	5103	chr1:569631:+	INCL_NON_REF_SPLICE	YES	8	22	0.92	0.81	0.2498	0.2604	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.81	0.92	0.5102	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	55	8	RP5-857K21.11	1106	chr1:569861:+	MTATP6P1	5190	chr1:569718:+	INCL_NON_REF_SPLICE	YES	8	0	0.89	1	0.2923	0.0425	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.89	1	0.3348	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TN	32	91	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.17	0.4836	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH841_LUNG	1	1	0.6536	FALSE	369	2501	205	193	0	FALSE	ACH-000292
NCIH841_LUNG	TMEM50B--AP000302.58	47	15	TMEM50B	1174	chr21:34852145:-	AP000302.58	20283	chr21:34856149:-	INCL_NON_REF_SPLICE	YES	164	2	0.27	0.97	0.2498	0.0797	LOCAL_REARRANGEMENT:-:[2488],TMEM50B->chr21:34804792-34852318:-,transmembrane_protein_50B,AP000302.58->chr21:34854806-34856565:-	NCIH841_LUNG	0.27	0.97	0.3295	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	RP11-123O10.4--GRIP1	43	16	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2285	0.085	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH841_LUNG	1	1	0.3135	FALSE	416	2512	207	587	0	FALSE	ACH-000292
NCIH841_LUNG	ZNF654--HMGB2	47	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2498	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH841_LUNG	1	1	0.2498	TRUE	0	0	0	518	0	FALSE	ACH-000292
NCIH841_LUNG	PTMA--PTMS	46	0	PTMA	6054	chr2:232576687:+	PTMS	13428	chr12:6878793:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2444	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH841_LUNG	1	1	0.2444	TRUE	0	0	0	16	0	TRUE	ACH-000292
NCIH841_LUNG	RP11-59N23.1--CMAS	39	26	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	28	475	0.7	0.12	0.2072	0.1382	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH841_LUNG	0.12	0.7	0.3454	TRUE	21	102	17	28	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	35	15	RP5-857K21.11	1089	chr1:569844:+	MTATP6P1	5174	chr1:569702:+	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.186	0.0797	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.94	1	0.2657	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	CALM3--MT-ND4L	31	30	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	3564	0	0.02	1	0.1647	0.1594	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH841_LUNG	0.02	1	0.3241	FALSE	1	1	0	107	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	35	12	POLR2A	17033	chr17:7417381:+	MT-ATP8	20701	chrM:8481:+	INCL_NON_REF_SPLICE	YES	1674	747	0.03	0.06	0.186	0.0638	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0.03	0.06	0.2498	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	PLXDC1--TAF13	37	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1966	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH841_LUNG	1	1	0.1966	TRUE	7	10	0	216	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	32	8	RP5-857K21.11	1105	chr1:569860:+	MTATP6P1	5191	chr1:569719:+	INCL_NON_REF_SPLICE	YES	5	0	0.89	1	0.17	0.0425	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.89	1	0.2125	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	12	71	RP5-857K21.11	1465	chr1:570220:+	MTATP6P1	4979	chr1:569507:+	INCL_NON_REF_SPLICE	YES	0	150	1	0.36	0.0638	0.3773	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.36	1	0.4411	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	12	70	RP5-857K21.11	1220	chr1:569975:+	MTATP6P1	4835	chr1:569363:+	INCL_NON_REF_SPLICE	YES	10	96	0.89	0.46	0.0638	0.372	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.46	0.89	0.4358	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TN	14	59	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0744	0.3135	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH841_LUNG	1	1	0.3879	FALSE	369	2501	205	193	0	FALSE	ACH-000292
NCIH841_LUNG	ZMYM4--ARL15	23	12	ZMYM4	6345	chr1:35827390:+	ARL15	39071	chr5:53409240:-	ONLY_REF_SPLICE	YES	148	44	0.19	0.44	0.1222	0.0638	ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4,ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-	NCIH841_LUNG	0.19	0.44	0.186	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	SMG6--MYO15A	23	11	SMG6	20091	chr17:2091693:-	MYO15A	47166	chr17:18027797:+	ONLY_REF_SPLICE	YES	49	8	0.41	0.81	0.1222	0.0585	SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-,MYO15A->chr17:18012020-18083116:+,myosin_XVA	NCIH841_LUNG	0.41	0.81	0.1807	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	RP11-680G10.1--GSE1	22	14	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	169	1	0.18	0.1169	0.0744	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH841_LUNG	0.18	1	0.1913	TRUE	458	1351	185	561	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TN	25	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1329	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH841_LUNG	1	1	0.1329	FALSE	369	2501	205	193	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	25	0	RP5-857K21.11	1146	chr1:569901:+	MTATP6P1	5219	chr1:569747:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1329	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	1	1	0.1329	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TC	17	28	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0903	0.1488	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH841_LUNG	1	1	0.2391	FALSE	462	80	0	856	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	3	84	RP5-857K21.11	1533	chr1:570288:+	MTATP6P1	4813	chr1:569341:+	INCL_NON_REF_SPLICE	YES	0	106	1	0.45	0.0159	0.4464	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.45	1	0.4623	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	12	47	RP5-857K21.11	1075	chr1:569830:+	MTATP6P1	5064	chr1:569592:+	INCL_NON_REF_SPLICE	YES	1	66	0.98	0.47	0.0638	0.2498	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.47	0.98	0.3136	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	ZNF586--AC006115.3	20	15	ZNF586	1224	chr19:58281246:+	AC006115.3	21446	chr19:57301296:+	ONLY_REF_SPLICE	YES	80	1	0.3	0.97	0.1063	0.0797	ZNF586->chr19:58281023-58331307:+,zinc_finger_protein_586,AC006115.3->chr19:57202054-57311014:+	NCIH841_LUNG	0.3	0.97	0.186	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TN	18	22	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0957	0.1169	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH841_LUNG	1	1	0.2126	FALSE	369	2501	205	193	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-444D3.1--SOX5	13	41	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	26	1	0.68	0.0691	0.2179	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH841_LUNG	0.68	1	0.287	TRUE	160	277	29	98	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TC	18	19	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0957	0.101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH841_LUNG	1	1	0.1967	FALSE	462	80	0	856	0	FALSE	ACH-000292
NCIH841_LUNG	NXN--COX10-AS1	20	11	NXN	1452	chr17:882559:-	COX10-AS1	24794	chr17:13937733:-	ONLY_REF_SPLICE	YES	34	86	0.48	0.26	0.1063	0.0585	NXN->chr17:702553-883010:-,nucleoredoxin,COX10-AS1->COX10_antisense_RNA_1,chr17:13659795-13972812:-	NCIH841_LUNG	0.26	0.48	0.1648	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TN	12	42	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0638	0.2232	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH841_LUNG	1	1	0.287	FALSE	369	2501	205	193	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	9	51	RP5-857K21.11	1090	chr1:569845:+	MTATP6P1	4851	chr1:569379:+	INCL_NON_REF_SPLICE	YES	4	95	0.94	0.39	0.0478	0.271	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.39	0.94	0.3188	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	3	74	RP5-857K21.11	1315	chr1:570070:+	MTATP6P1	4813	chr1:569341:+	INCL_NON_REF_SPLICE	YES	50	106	0.61	0.42	0.0159	0.3932	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.42	0.61	0.4091	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	NUDT1--HACE1	21	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1116	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	NCIH841_LUNG	1	1	0.1116	TRUE	1	20	0	20	17	FALSE	ACH-000292
NCIH841_LUNG	RP11-120D5.1--MID1	16	16	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	53	869	0.38	0.04	0.085	0.085	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH841_LUNG	0.04	0.38	0.17	FALSE	16	356	14	466	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	8	47	RP5-857K21.11	1096	chr1:569851:+	MTATP6P1	5088	chr1:569616:+	INCL_NON_REF_SPLICE	YES	5	61	0.92	0.47	0.0425	0.2498	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.47	0.92	0.2923	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	6	50	RP5-857K21.11	1083	chr1:569838:+	MTATP6P1	4985	chr1:569513:+	INCL_NON_REF_SPLICE	YES	2	128	0.97	0.3	0.0319	0.2657	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.3	0.97	0.2976	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	5	54	RP5-857K21.11	1090	chr1:569845:+	MTATP6P1	4813	chr1:569341:+	INCL_NON_REF_SPLICE	YES	4	106	0.94	0.36	0.0266	0.287	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.36	0.94	0.3136	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	SPTBN1--SLC9A3R2	16	10	SPTBN1	4816	chr2:54753703:+	SLC9A3R2	59294	chr16:2086956:+	ONLY_REF_SPLICE	YES	306	357	0.08	0.07	0.085	0.0531	GTEx&tcga_normals:1/3694=0.03%,SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1,SLC9A3R2->SLC9A3_regulator_2,chr16:2075357-2089027:+	NCIH841_LUNG	0.07	0.08	0.1381	TRUE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TY	18	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0957	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH841_LUNG	1	1	0.0957	FALSE	13	214	14	42	0	FALSE	ACH-000292
NCIH841_LUNG	PTMA--PTMS	18	0	PTMA	6054	chr2:232576687:+	PTMS	13958	chr12:6879323:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0957	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH841_LUNG	1	1	0.0957	TRUE	0	0	0	16	0	TRUE	ACH-000292
NCIH841_LUNG	RP11-680G10.1--GSE1	16	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	251	1	0.09	0.085	0.0425	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH841_LUNG	0.09	1	0.1275	TRUE	465	1949	224	605	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	6	47	RP5-857K21.11	1090	chr1:569845:+	MTATP6P1	5082	chr1:569610:+	INCL_NON_REF_SPLICE	YES	4	66	0.93	0.45	0.0319	0.2498	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.45	0.93	0.2817	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TN	10	28	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0.1488	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH841_LUNG	1	1	0.2019	FALSE	369	2501	205	193	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	3	56	RP5-857K21.11	1107	chr1:569862:+	MTATP6P1	4828	chr1:569356:+	INCL_NON_REF_SPLICE	YES	8	106	0.88	0.36	0.0159	0.2976	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.36	0.88	0.3135	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	C15orf57--CBX3	11	22	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	147	171	0.18	0.16	0.0585	0.1169	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH841_LUNG	0.16	0.18	0.1754	TRUE	267	562	48	632	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TN	7	38	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0.2019	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH841_LUNG	1	1	0.2391	FALSE	369	2501	205	193	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TN	5	46	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0.2444	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH841_LUNG	1	1	0.271	FALSE	369	2501	205	193	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	4	49	RP5-857K21.11	1075	chr1:569830:+	MTATP6P1	4996	chr1:569524:+	INCL_NON_REF_SPLICE	YES	1	70	0.98	0.43	0.0213	0.2604	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.43	0.98	0.2817	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	3	53	RP5-857K21.11	1083	chr1:569838:+	MTATP6P1	4493	chr1:569021:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0159	0.2816	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.97	1	0.2975	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	4	48	RP5-857K21.11	1072	chr1:569827:+	MTATP6P1	4797	chr1:569325:+	INCL_NON_REF_SPLICE	YES	1	104	0.98	0.33	0.0213	0.2551	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.33	0.98	0.2764	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	7	36	RP5-857K21.11	1047	chr1:569802:+	MTATP6P1	5028	chr1:569556:+	INCL_NON_REF_SPLICE	YES	1	66	0.98	0.39	0.0372	0.1913	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.39	0.98	0.2285	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	3	51	RP5-857K21.11	1090	chr1:569845:+	MTATP6P1	4992	chr1:569520:+	INCL_NON_REF_SPLICE	YES	4	121	0.93	0.31	0.0159	0.271	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.31	0.93	0.2869	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	3	51	RP5-857K21.11	1087	chr1:569842:+	MTATP6P1	4917	chr1:569445:+	INCL_NON_REF_SPLICE	YES	2	122	0.96	0.31	0.0159	0.271	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.31	0.96	0.2869	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	3	51	RP5-857K21.11	1090	chr1:569845:+	MTATP6P1	5025	chr1:569553:+	INCL_NON_REF_SPLICE	YES	4	67	0.93	0.45	0.0159	0.271	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.45	0.93	0.2869	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	NPM1P24--SET	15	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0797	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH841_LUNG	1	1	0.0797	TRUE	0	0	0	434	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-CO3	13	8	POLR2A	16612	chr17:7416960:+	MT-CO3	20945	chrM:9566:+	INCL_NON_REF_SPLICE	YES	2660	29291	0.01	0	0.0691	0.0425	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH841_LUNG	0	0.01	0.1116	FALSE	0	0	0	5	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	6	32	RP5-857K21.11	1039	chr1:569794:+	MTATP6P1	4853	chr1:569381:+	INCL_NON_REF_SPLICE	YES	1	86	0.97	0.31	0.0319	0.17	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.31	0.97	0.2019	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	C15orf57--CBX3	9	17	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	139	180	0.16	0.13	0.0478	0.0903	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH841_LUNG	0.13	0.16	0.1381	TRUE	267	562	48	632	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	5	33	RP5-857K21.11	1083	chr1:569838:+	MTATP6P1	5147	chr1:569675:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0266	0.1754	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.95	1	0.202	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	SMG6--MYO15A	8	21	SMG6	20091	chr17:2091693:-	MYO15A	41265	chr17:18021896:+	ONLY_REF_SPLICE	YES	49	0	0.37	1	0.0425	0.1116	SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-,MYO15A->chr17:18012020-18083116:+,myosin_XVA	NCIH841_LUNG	0.37	1	0.1541	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	ZMYM4--ARL15	12	5	ZMYM4	3227	chr1:35791006:+	ARL15	39071	chr5:53409240:-	ONLY_REF_SPLICE	YES	161	44	0.1	0.28	0.0638	0.0266	ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4,ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-	NCIH841_LUNG	0.1	0.28	0.0904	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	ZNF217--SIGLEC5	12	5	ZNF217	2554	chr20:52224893:-	SIGLEC5	26446	chr19:52115675:-	ONLY_REF_SPLICE	YES	142	0	0.11	1	0.0638	0.0266	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,SIGLEC5->chr19:52114781-52150151:-,chr19:52115344-52150142:-,sialic_acid_binding_Ig_like_lectin_5	NCIH841_LUNG	0.11	1	0.0904	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	8	18	POLR2A	16966	chr17:7417314:+	MT-ATP8	20688	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2122	13	0.01	0.67	0.0425	0.0957	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0.01	0.67	0.1382	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	MT-ND6--MT-TE	12	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0638	0.0053	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH841_LUNG	1	1	0.0691	FALSE	499	1288	110	792	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-96H19.1--RP11-446N19.1	9	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	7	0.92	0.76	0.0478	0.0691	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH841_LUNG	0.76	0.92	0.1169	FALSE	515	4851	409	746	0	FALSE	ACH-000292
NCIH841_LUNG	ERBB4--LL0XNC01-237H1.2	9	12	ERBB4	6418	chr2:212812155:-	LL0XNC01-237H1.2	47186	chrX:102152502:+	ONLY_REF_SPLICE	YES	54	8	0.28	0.72	0.0478	0.0638	ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,LL0XNC01-237H1.2->chrX:102139342-102161086:+	NCIH841_LUNG	0.28	0.72	0.1116	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	LSMD1--VPS53	3	36	LSMD1	2175	chr17:7786553:-	VPS53	23981	chr17:559193:-	ONLY_REF_SPLICE	YES	54	82	0.42	0.32	0.0159	0.1913	LSMD1->chr17:7760003-7788556:-,VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	NCIH841_LUNG	0.32	0.42	0.2072	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	RP11-96H19.1--RP11-446N19.1	8	15	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.92	1	0.0425	0.0797	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH841_LUNG	0.92	1	0.1222	FALSE	407	2205	196	549	0	FALSE	ACH-000292
NCIH841_LUNG	AP003900.6--AP000345.1	8	14	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	8	0	0.73	1	0.0425	0.0744	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH841_LUNG	0.73	1	0.1169	TRUE	0	8	0	37	1	FALSE	ACH-000292
NCIH841_LUNG	MT-ND6--MT-TE	9	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0478	0.0478	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH841_LUNG	1	1	0.0956	FALSE	499	1288	110	792	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	9	9	POLR2A	16874	chr17:7417222:+	MT-ATP8	20701	chrM:8481:+	INCL_NON_REF_SPLICE	YES	1908	747	0.01	0.02	0.0478	0.0478	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0.01	0.02	0.0956	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-444D3.1--SOX5	1	41	RP11-444D3.1	9606	chr12:24366277:-	SOX5	13900	chr12:24102595:-	ONLY_REF_SPLICE	YES	0	2	1	0.95	0.0053	0.2179	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH841_LUNG	0.95	1	0.2232	TRUE	8	10	1	12	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	4	29	RP5-857K21.11	1033	chr1:569788:+	MTATP6P1	4531	chr1:569059:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0213	0.1541	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.97	1	0.1754	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TC	11	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0585	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH841_LUNG	1	1	0.0585	FALSE	462	80	0	856	0	FALSE	ACH-000292
NCIH841_LUNG	PTMA--PTMS	11	0	PTMA	6053	chr2:232576686:+	PTMS	13737	chr12:6879102:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0585	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH841_LUNG	1	1	0.0585	TRUE	0	0	0	16	0	TRUE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	6	19	RP5-857K21.11	1020	chr1:569775:+	MTATP6P1	4992	chr1:569520:+	INCL_NON_REF_SPLICE	YES	1	121	0.96	0.17	0.0319	0.101	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.17	0.96	0.1329	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	3	28	RP5-857K21.11	1039	chr1:569794:+	MTATP6P1	5084	chr1:569612:+	INCL_NON_REF_SPLICE	YES	1	64	0.97	0.33	0.0159	0.1488	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.33	0.97	0.1647	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	6	15	POLR2A	16802	chr17:7417150:+	MT-ATP8	20596	chrM:8376:+	INCL_NON_REF_SPLICE	YES	2397	0	0.01	1	0.0319	0.0797	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0.01	1	0.1116	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	MT-ND6--MT-TE	6	14	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0.0744	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH841_LUNG	1	1	0.1063	FALSE	499	1288	110	792	0	FALSE	ACH-000292
NCIH841_LUNG	GNGT1--AC002076.10	7	8	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	21	23	0.42	0.39	0.0372	0.0425	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	NCIH841_LUNG	0.39	0.42	0.0797	FALSE	0	10	0	30	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TN	9	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0478	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH841_LUNG	1	1	0.0478	FALSE	369	2501	205	193	0	FALSE	ACH-000292
NCIH841_LUNG	SYCP2L--CASC15	8	4	SYCP2L	24854	chr6:10942979:+	CASC15	67207	chr6:22205414:+	ONLY_REF_SPLICE	YES	42	4	0.22	0.75	0.0425	0.0213	SYCP2L->chr6:10748027-10979553:+,synaptonemal_complex_protein_2_like,CASC15->cancer_susceptibility_candidate_15_(non-protein_coding),chr6:21665003-22214734:+	NCIH841_LUNG	0.22	0.75	0.0638	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	CCAT1--CASC8	5	15	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	4	0	0.83	1	0.0266	0.0797	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH841_LUNG	0.83	1	0.1063	TRUE	0	7	0	14	6	TRUE	ACH-000292
NCIH841_LUNG	CCDC144B--RP1-41C23.1	8	3	CCDC144B	1514	chr17:18528417:-	RP1-41C23.1	37167	chr17:29964404:+	ONLY_REF_SPLICE	YES	47	0	0.19	1	0.0425	0.0159	CCDC144B->chr17:18441117-18528930:-,coiled-coil_domain_containing_144B_(pseudogene),RP1-41C23.1->chr17:29910181-29964562:+	NCIH841_LUNG	0.19	1	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TC	4	19	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0213	0.101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH841_LUNG	1	1	0.1223	FALSE	462	80	0	856	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	4	19	RP5-857K21.11	1020	chr1:569775:+	MTATP6P1	4969	chr1:569497:+	INCL_NON_REF_SPLICE	YES	1	155	0.96	0.13	0.0213	0.101	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.13	0.96	0.1223	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TC	3	22	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0159	0.1169	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH841_LUNG	1	1	0.1328	FALSE	462	80	0	856	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TY	8	2	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0425	0.0106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH841_LUNG	1	1	0.0531	FALSE	13	214	14	42	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	5	14	POLR2A	16819	chr17:7417167:+	MT-ATP8	20688	chrM:8468:+	INCL_NON_REF_SPLICE	NO	2220	13	0.01	0.59	0.0266	0.0744	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0.01	0.59	0.101	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-120D5.1--MID1	4	18	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	59	869	0.27	0.02	0.0213	0.0957	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH841_LUNG	0.02	0.27	0.117	FALSE	0	9	0	55	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-444D3.1--SOX5	3	22	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	3	25	0.89	0.5	0.0159	0.1169	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH841_LUNG	0.5	0.89	0.1328	TRUE	274	363	69	150	0	FALSE	ACH-000292
NCIH841_LUNG	AP003900.6--AP000345.1	5	13	AP003900.6	2187	chr21:11172043:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	7	0	0.72	1	0.0266	0.0691	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH841_LUNG	0.72	1	0.0957	TRUE	1	2	0	16	0	FALSE	ACH-000292
NCIH841_LUNG	PTMA--PTMS	8	1	PTMA	6060	chr2:232576693:+	PTMS	13783	chr12:6879148:+	INCL_NON_REF_SPLICE	YES	8020	1433	0	0.01	0.0425	0.0053	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH841_LUNG	0	0.01	0.0478	FALSE	0	0	0	16	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	5	12	POLR2A	16678	chr17:7417026:+	MT-ATP8	20634	chrM:8414:+	INCL_NON_REF_SPLICE	YES	2734	0	0.01	1	0.0266	0.0638	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0.01	1	0.0904	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	GNGT1--AC002076.10	6	7	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	17	23	0.43	0.36	0.0319	0.0372	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	NCIH841_LUNG	0.36	0.43	0.0691	FALSE	0	28	0	37	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TC	3	19	MT-TA	1063	chrM:5593:-	MT-TC	4102	chrM:5794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0159	0.101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH841_LUNG	1	1	0.1169	FALSE	462	80	0	856	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	3	19	POLR2A	16966	chr17:7417314:+	MT-ATP8	20603	chrM:8383:+	INCL_NON_REF_SPLICE	YES	2122	0	0.01	1	0.0159	0.101	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0.01	1	0.1169	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	4	15	POLR2A	16861	chr17:7417209:+	MT-ATP8	20688	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1925	13	0.01	0.59	0.0213	0.0797	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0.01	0.59	0.101	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-120D5.1--MID1	3	19	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	53	359	0.29	0.06	0.0159	0.101	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH841_LUNG	0.06	0.29	0.1169	FALSE	0	23	1	67	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-444D3.1--SOX5	1	27	RP11-444D3.1	8531	chr12:24430150:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	3	26	0.9	0.52	0.0053	0.1435	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH841_LUNG	0.52	0.9	0.1488	TRUE	13	17	1	13	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	6	6	RP5-857K21.11	1112	chr1:569867:+	MTATP6P1	5198	chr1:569726:+	INCL_NON_REF_SPLICE	YES	13	0	0.48	1	0.0319	0.0319	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.48	1	0.0638	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	CACNA2D1--ABCB1	7	1	CACNA2D1	1434	chr7:82072681:-	ABCB1	52043	chr7:87230394:-	ONLY_REF_SPLICE	YES	73	0	0.1	1	0.0372	0.0053	CACNA2D1->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_1,chr7:81575760-82073114:-,ABCB1->ATP_binding_cassette_subfamily_B_member_1,Oncogene{Bushman},chr7:87133175-87342611:-	NCIH841_LUNG	0.1	1	0.0425	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	MT-ND6--MT-TE	6	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0.0266	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH841_LUNG	1	1	0.0585	FALSE	499	1288	110	792	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	6	5	POLR2A	16235	chr17:7416583:+	MT-ATP8	20618	chrM:8398:+	INCL_NON_REF_SPLICE	YES	3824	0	0	1	0.0319	0.0266	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0	1	0.0585	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	6	5	POLR2A	16256	chr17:7416604:+	MT-ATP8	20618	chrM:8398:+	INCL_NON_REF_SPLICE	YES	3298	0	0	1	0.0319	0.0266	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0	1	0.0585	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-603B24.1--HERC2P3	5	9	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	44	1	0.24	0.0266	0.0478	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	NCIH841_LUNG	0.24	1	0.0744	TRUE	27	10	1	20	0	FALSE	ACH-000292
NCIH841_LUNG	TMSB10--TMSB4X	7	1	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	4096	7654	0	0	0.0372	0.0053	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	NCIH841_LUNG	0	0	0.0425	FALSE	0	1	0	17	1	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	4	12	POLR2A	16685	chr17:7417033:+	MT-ATP8	20662	chrM:8442:+	INCL_NON_REF_SPLICE	YES	2587	0	0.01	1	0.0213	0.0638	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0.01	1	0.0851	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	RP13-188A5.1--KLF8	5	8	RP13-188A5.1	2795	chrX:56041394:+	KLF8	7929	chrX:56276664:+	INCL_NON_REF_SPLICE	YES	2	1	0.87	0.93	0.0266	0.0425	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	NCIH841_LUNG	0.87	0.93	0.0691	TRUE	1	15	1	5	11	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	7	0	RP5-857K21.11	1075	chr1:569830:+	MTATP6P1	5225	chr1:569753:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	1	1	0.0372	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	CCAT1--CASC8	4	11	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	4	0	0.79	1	0.0213	0.0585	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH841_LUNG	0.79	1	0.0798	TRUE	0	26	0	18	24	TRUE	ACH-000292
NCIH841_LUNG	CTD-2152M20.2--GOLPH3	6	3	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	98	1	0.08	0.0319	0.0159	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	NCIH841_LUNG	0.08	1	0.0478	TRUE	10	26	2	24	0	FALSE	ACH-000292
NCIH841_LUNG	MTATP6P1--MTND2P28	6	3	MTATP6P1	1123	chr1:569198:+	MTND2P28	4879	chr1:565217:+	INCL_NON_REF_SPLICE	YES	1923	6277	0	0	0.0319	0.0159	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	NCIH841_LUNG	0	0	0.0478	FALSE	20	3	0	12	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	3	15	POLR2A	16844	chr17:7417192:+	MT-ATP8	20618	chrM:8398:+	INCL_NON_REF_SPLICE	YES	2001	0	0.01	1	0.0159	0.0797	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0.01	1	0.0956	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	SMYD4--LSMD1	5	7	SMYD4	8952	chr17:1703544:-	LSMD1	23368	chr17:7762142:-	INCL_NON_REF_SPLICE	YES	95	30	0.11	0.29	0.0266	0.0372	SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-,LSMD1->chr17:7760003-7788556:-	NCIH841_LUNG	0.11	0.29	0.0638	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	DDAH1--RP11-458D21.1	6	2	DDAH1	4486	chr1:85987302:-	RP11-458D21.1	26057	chr1:145376692:-	INCL_NON_REF_SPLICE	YES	85	21	0.09	0.28	0.0319	0.0106	DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,RP11-458D21.1->chr1:145373054-145382434:-	NCIH841_LUNG	0.09	0.28	0.0425	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TY	6	2	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0.0106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH841_LUNG	1	1	0.0425	FALSE	13	214	14	42	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-CO3	5	6	POLR2A	16559	chr17:7416907:+	MT-CO3	20977	chrM:9598:+	INCL_NON_REF_SPLICE	YES	2448	28503	0	0	0.0266	0.0319	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH841_LUNG	0	0	0.0585	FALSE	0	0	0	5	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-96H19.1--RP11-446N19.1	3	14	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	7	0.89	0.71	0.0159	0.0744	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH841_LUNG	0.71	0.89	0.0903	FALSE	467	2173	244	435	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	3	14	RP5-857K21.11	1092	chr1:569847:+	MTATP6P1	5177	chr1:569705:+	INCL_NON_REF_SPLICE	YES	4	0	0.81	1	0.0159	0.0744	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.81	1	0.0903	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	CTGF--RPS28	6	1	CTGF	1159	chr6:132272355:-	RPS28	7541	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	460	0	0.01	1	0.0319	0.0053	GTEx&tcga_normals:1/3694=0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH841_LUNG	0.01	1	0.0372	FALSE	0	0	0	5	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	4	9	POLR2A	16573	chr17:7416921:+	MT-ATP8	20588	chrM:8368:+	INCL_NON_REF_SPLICE	YES	2440	0	0.01	1	0.0213	0.0478	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0.01	1	0.0691	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	4	9	POLR2A	16567	chr17:7416915:+	MT-ATP8	20603	chrM:8383:+	INCL_NON_REF_SPLICE	YES	2397	0	0.01	1	0.0213	0.0478	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0.01	1	0.0691	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	PTMA--PTMS	6	1	PTMA	6530	chr2:232577163:+	PTMS	13740	chr12:6879105:+	INCL_NON_REF_SPLICE	NO	7149	957	0	0.01	0.0319	0.0053	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH841_LUNG	0	0.01	0.0372	FALSE	0	0	0	16	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	4	9	RP5-857K21.11	1006	chr1:569761:+	MTATP6P1	4825	chr1:569353:+	INCL_NON_REF_SPLICE	YES	0	107	1	0.11	0.0213	0.0478	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.11	1	0.0691	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	ZMYM4--ARL15	4	9	ZMYM4	4749	chr1:35825047:+	ARL15	39071	chr5:53409240:-	ONLY_REF_SPLICE	YES	171	44	0.07	0.23	0.0213	0.0478	ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4,ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-	NCIH841_LUNG	0.07	0.23	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	MT-ND6--MT-TE	5	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0266	0.0213	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH841_LUNG	0.82	1	0.0479	FALSE	499	1288	110	792	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	3	12	POLR2A	16883	chr17:7417231:+	MT-ATP8	20698	chrM:8478:+	INCL_NON_REF_SPLICE	YES	1964	520	0.01	0.03	0.0159	0.0638	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0.01	0.03	0.0797	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	5	4	POLR2A	16193	chr17:7416541:+	MT-ATP8	20692	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4025	156	0	0.05	0.0266	0.0213	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0	0.05	0.0479	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	3	12	POLR2A	16706	chr17:7417054:+	MT-ATP8	20661	chrM:8441:+	INCL_NON_REF_SPLICE	YES	2619	0	0.01	1	0.0159	0.0638	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0.01	1	0.0797	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	6	0	RP5-857K21.11	1138	chr1:569893:+	MTATP6P1	5211	chr1:569739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	1	1	0.0319	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	TMSB10--TMSB4X	6	0	TMSB10	1438	chr2:85133186:+	TMSB4X	6247	chrX:12994426:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	NCIH841_LUNG	1	1	0.0319	TRUE	0	1	0	17	1	TRUE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TC	3	10	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0159	0.0531	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH841_LUNG	1	1	0.069	FALSE	462	80	0	856	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	4	6	POLR2A	16424	chr17:7416772:+	MT-ATP8	20618	chrM:8398:+	INCL_NON_REF_SPLICE	YES	3290	0	0	1	0.0213	0.0319	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0	1	0.0532	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-CO3	4	6	POLR2A	16150	chr17:7416498:+	MT-CO3	20945	chrM:9566:+	INCL_NON_REF_SPLICE	YES	1949	29291	0.01	0	0.0213	0.0319	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH841_LUNG	0	0.01	0.0532	FALSE	0	0	0	5	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	4	5	POLR2A	16399	chr17:7416747:+	MT-ATP8	20688	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3753	13	0	0.41	0.0213	0.0266	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0	0.41	0.0479	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-120D5.1--MID1	2	13	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	52	869	0.22	0.02	0.0106	0.0691	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH841_LUNG	0.02	0.22	0.0797	FALSE	0	48	1	163	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	3	9	RP5-857K21.11	1150	chr1:569905:+	MTATP6P1	5190	chr1:569718:+	INCL_NON_REF_SPLICE	YES	26	0	0.32	1	0.0159	0.0478	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.32	1	0.0637	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	SMYD4--LSMD1	3	9	SMYD4	9345	chr17:1703151:-	LSMD1	24994	chr17:7760516:-	ONLY_REF_SPLICE	YES	74	962	0.14	0.01	0.0159	0.0478	SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-,LSMD1->chr17:7760003-7788556:-	NCIH841_LUNG	0.01	0.14	0.0637	FALSE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	ARL15--ZMYM4	4	4	ARL15	4552	chr5:53450410:-	ZMYM4	19804	chr1:35835630:+	ONLY_REF_SPLICE	YES	49	139	0.14	0.05	0.0213	0.0213	ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4	NCIH841_LUNG	0.05	0.14	0.0426	TRUE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	CTGF--RPS28	5	0	CTGF	1169	chr6:132272345:-	RPS28	7559	chr19:8386402:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0	GTEx&tcga_normals:1/3694=0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH841_LUNG	1	1	0.0266	TRUE	0	0	0	5	0	TRUE	ACH-000292
NCIH841_LUNG	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH841_LUNG	1	1	0.0266	TRUE	0	0	0	434	0	FALSE	ACH-000292
NCIH841_LUNG	PCNX--DIAPH2	5	0	PCNX	49618	chr14:71576548:+	DIAPH2	85678	chrX:96638908:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	PCNX->chr14:71374122-71582099:+,DIAPH2->chrX:95939662-96859996:+,diaphanous_related_formin_2	NCIH841_LUNG	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	4	4	POLR2A	16256	chr17:7416604:+	MT-ATP8	20692	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3298	156	0	0.05	0.0213	0.0213	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0	0.05	0.0426	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	4	4	POLR2A	16584	chr17:7416932:+	MT-ATP8	20704	chrM:8484:+	INCL_NON_REF_SPLICE	YES	2481	954	0	0.01	0.0213	0.0213	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0	0.01	0.0426	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-CO3	3	8	POLR2A	16528	chr17:7416876:+	MT-CO3	20945	chrM:9566:+	INCL_NON_REF_SPLICE	YES	2797	29291	0	0	0.0159	0.0425	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH841_LUNG	0	0	0.0584	FALSE	0	0	0	5	0	FALSE	ACH-000292
NCIH841_LUNG	SMYD4--LSMD1	4	4	SMYD4	8648	chr17:1703848:-	LSMD1	23368	chr17:7762142:-	INCL_NON_REF_SPLICE	YES	93	30	0.08	0.21	0.0213	0.0213	SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-,LSMD1->chr17:7760003-7788556:-	NCIH841_LUNG	0.08	0.21	0.0426	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	MTATP6P1--MTND2P28	4	3	MTATP6P1	1122	chr1:569197:+	MTND2P28	4682	chr1:565020:+	INCL_NON_REF_SPLICE	YES	1910	0	0	1	0.0213	0.0159	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	NCIH841_LUNG	0	1	0.0372	FALSE	20	3	0	12	0	FALSE	ACH-000292
NCIH841_LUNG	CTGF--ACTB	4	2	CTGF	1204	chr6:132272310:-	ACTB	10614	chr7:5570232:-	INCL_NON_REF_SPLICE	YES	316	4	0.02	0.6	0.0213	0.0106	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH841_LUNG	0.02	0.6	0.0319	TRUE	0	0	0	9	0	FALSE	ACH-000292
NCIH841_LUNG	FTH1--ACTB	4	2	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	6058	5	0	0.55	0.0213	0.0106	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH841_LUNG	0	0.55	0.0319	FALSE	1	0	0	97	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TY	4	2	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0213	0.0106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH841_LUNG	1	1	0.0319	FALSE	13	214	14	42	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TY	4	2	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0213	0.0106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH841_LUNG	1	1	0.0319	FALSE	13	214	14	42	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TY	4	2	MT-TA	1061	chrM:5595:-	MT-TY	4031	chrM:5930:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0213	0.0106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH841_LUNG	1	1	0.0319	FALSE	13	214	14	42	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	4	2	POLR2A	16202	chr17:7416550:+	MT-ATP8	20701	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4327	747	0	0.01	0.0213	0.0106	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0	0.01	0.0319	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	3	6	POLR2A	16448	chr17:7416796:+	MT-ATP8	20656	chrM:8436:+	INCL_NON_REF_SPLICE	YES	3192	0	0	1	0.0159	0.0319	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0	1	0.0478	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-CO3	3	6	POLR2A	16567	chr17:7416915:+	MT-CO3	20987	chrM:9608:+	INCL_NON_REF_SPLICE	NO	2398	29207	0	0	0.0159	0.0319	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH841_LUNG	0	0	0.0478	FALSE	0	0	0	5	0	FALSE	ACH-000292
NCIH841_LUNG	ZNF217--BCAS1	4	2	ZNF217	2554	chr20:52224893:-	BCAS1	28031	chr20:52591969:-	ONLY_REF_SPLICE	YES	142	2	0.04	0.75	0.0213	0.0106	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	NCIH841_LUNG	0.04	0.75	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	CTGF--ACTB	4	1	CTGF	1136	chr6:132272378:-	ACTB	10623	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	587	5	0.01	0.5	0.0213	0.0053	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH841_LUNG	0.01	0.5	0.0266	FALSE	0	0	0	9	0	FALSE	ACH-000292
NCIH841_LUNG	NRIP1--AF127936.7	3	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	40	0	0.17	1	0.0159	0.0266	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH841_LUNG	0.17	1	0.0425	FALSE	164	806	69	479	0	FALSE	ACH-000292
NCIH841_LUNG	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.0213	0.0053	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH841_LUNG	0.62	1	0.0266	FALSE	292	1546	117	613	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	3	5	POLR2A	16265	chr17:7416613:+	MT-ATP8	20661	chrM:8441:+	INCL_NON_REF_SPLICE	YES	3710	0	0	1	0.0159	0.0266	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0	1	0.0425	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-123O10.4--GRIP1	2	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0.0478	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH841_LUNG	1	1	0.0584	FALSE	93	270	15	244	0	FALSE	ACH-000292
NCIH841_LUNG	SMYD4--LSMD1	3	5	SMYD4	8952	chr17:1703544:-	LSMD1	23713	chr17:7761797:-	INCL_NON_REF_SPLICE	YES	95	93	0.08	0.08	0.0159	0.0266	SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-,LSMD1->chr17:7760003-7788556:-	NCIH841_LUNG	0.08	0.08	0.0425	TRUE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TY	4	0	MT-TA	1016	chrM:5640:-	MT-TY	4072	chrM:5889:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0213	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH841_LUNG	1	1	0.0213	FALSE	13	214	14	42	0	FALSE	ACH-000292
NCIH841_LUNG	MTATP6P1--MTND2P28	4	0	MTATP6P1	1086	chr1:569161:+	MTND2P28	4682	chr1:565020:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	NCIH841_LUNG	1	1	0.0213	TRUE	20	3	0	12	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	3	4	POLR2A	16147	chr17:7416495:+	MT-ATP8	20648	chrM:8428:+	INCL_NON_REF_SPLICE	YES	1853	0	0	1	0.0159	0.0213	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0	1	0.0372	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	3	4	POLR2A	16214	chr17:7416562:+	MT-ATP8	20688	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4022	13	0	0.35	0.0159	0.0213	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0	0.35	0.0372	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-108K3.1--RP11-108K3.2	3	4	RP11-108K3.1	2262	chr15:51570247:+	RP11-108K3.2	8519	chr15:51613806:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0159	0.0213	NEIGHBORS[21929],RP11-108K3.1->chr15:51329685-51586109:+,RP11-108K3.2->chr15:51608038-51614193:+	NCIH841_LUNG	0.88	1	0.0372	FALSE	0	2	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	RP13-188A5.1--KLF8	3	4	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	9	1	0.44	0.88	0.0159	0.0213	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	NCIH841_LUNG	0.44	0.88	0.0372	TRUE	10	78	6	20	0	FALSE	ACH-000292
NCIH841_LUNG	ZNF654--HMGB2	4	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0213	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH841_LUNG	1	1	0.0213	TRUE	0	0	0	518	0	FALSE	ACH-000292
NCIH841_LUNG	FTH1--ACTB	3	3	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	6023	4	0	0.6	0.0159	0.0159	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH841_LUNG	0	0.6	0.0318	FALSE	1	0	0	97	0	FALSE	ACH-000292
NCIH841_LUNG	MT-ND6--MT-TE	3	3	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0159	0.0159	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH841_LUNG	0.86	1	0.0318	FALSE	499	1288	110	792	0	FALSE	ACH-000292
NCIH841_LUNG	NRG1--NRG1-IT2	3	3	NRG1	2344	chr8:31498245:+	NRG1-IT2	31143	chr8:32144617:+	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0159	0.0159	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT2->chr8:32028898-32145082:+	NCIH841_LUNG	0.67	1	0.0318	TRUE	0	2	0	3	2	TRUE	ACH-000292
NCIH841_LUNG	POLR2A--MT-ATP8	3	3	POLR2A	16134	chr17:7416482:+	MT-ATP8	20590	chrM:8370:+	INCL_NON_REF_SPLICE	YES	1567	0	0	1	0.0159	0.0159	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH841_LUNG	0	1	0.0318	FALSE	0	0	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-444D3.1--SOX5	3	3	RP11-444D3.1	1258	chr12:24715267:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	47	25	0.11	0.19	0.0159	0.0159	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH841_LUNG	0.11	0.19	0.0318	TRUE	0	1	1	7	0	FALSE	ACH-000292
NCIH841_LUNG	CAPZA2--SRP9	3	2	CAPZA2	3371	chr7:116502704:+	SRP9	25493	chr1:225965637:+	ONLY_REF_SPLICE	YES	558	284	0.01	0.02	0.0159	0.0106	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	NCIH841_LUNG	0.01	0.02	0.0265	FALSE	0	0	0	9	0	FALSE	ACH-000292
NCIH841_LUNG	CTGF--ACTB	3	2	CTGF	1166	chr6:132272348:-	ACTB	10612	chr7:5570234:-	INCL_NON_REF_SPLICE	YES	430	4	0.01	0.56	0.0159	0.0106	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH841_LUNG	0.01	0.56	0.0265	FALSE	0	0	0	9	0	FALSE	ACH-000292
NCIH841_LUNG	MT-TA--MT-TY	3	2	MT-TA	1056	chrM:5600:-	MT-TY	4026	chrM:5935:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0159	0.0106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH841_LUNG	1	1	0.0265	FALSE	13	214	14	42	0	FALSE	ACH-000292
NCIH841_LUNG	PTMA--PTMS	3	2	PTMA	6551	chr2:232577184:+	PTMS	13746	chr12:6879111:+	INCL_NON_REF_SPLICE	NO	6903	1014	0	0	0.0159	0.0106	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH841_LUNG	0	0	0.0265	FALSE	0	0	0	16	0	FALSE	ACH-000292
NCIH841_LUNG	PTMA--PTMS	3	2	PTMA	6551	chr2:232577184:+	PTMS	13767	chr12:6879132:+	INCL_NON_REF_SPLICE	NO	6903	1201	0	0	0.0159	0.0106	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH841_LUNG	0	0	0.0265	FALSE	0	0	0	16	0	FALSE	ACH-000292
NCIH841_LUNG	UBAP1--UBE2R2	3	2	UBAP1	1236	chr9:34179238:+	UBE2R2	16187	chr9:33886879:+	ONLY_REF_SPLICE	YES	413	471	0.01	0.01	0.0159	0.0106	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Muscle=[count:6=pct:2.6],Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4]},GTEx_v2:{count=2;pct=0.02%;dist=Vagina=1,Muscle_-_Skeletal=1},UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	NCIH841_LUNG	0.01	0.01	0.0265	FALSE	8	5	0	9	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	3	1	RP5-857K21.11	1393	chr1:570148:+	MTATP6P1	5217	chr1:569745:+	INCL_NON_REF_SPLICE	YES	42	0	0.09	1	0.0159	0.0053	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	0.09	1	0.0212	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	SPECC1--KCNJ12	3	1	SPECC1	28107	chr17:20163607:+	KCNJ12	42707	chr17:21311831:+	ONLY_REF_SPLICE	YES	33	6	0.11	0.4	0.0159	0.0053	SPECC1->Oncogene{Bushman},chr17:19912657-20222339:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1,KCNJ12->chr17:21279509-21323179:+,potassium_voltage-gated_channel_subfamily_J_member_12	NCIH841_LUNG	0.11	0.4	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	MTATP6P1--MTND2P28	3	0	MTATP6P1	1249	chr1:569324:+	MTND2P28	5609	chr1:565947:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0159	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	NCIH841_LUNG	1	1	0.0159	TRUE	20	3	0	12	0	FALSE	ACH-000292
NCIH841_LUNG	MTATP6P1--MTND2P28	3	0	MTATP6P1	1104	chr1:569179:+	MTND2P28	5600	chr1:565938:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0159	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	NCIH841_LUNG	1	1	0.0159	TRUE	20	3	0	12	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-386M24.4--MKI67	3	0	RP11-386M24.4	1211	chr15:93277215:-	MKI67	9841	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	RP11-386M24.4->chr15:93258989-93277425:-,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	NCIH841_LUNG	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	RP11-640M9.1--SEC22B	2	4	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	25754	chr1:145103908:+	ONLY_REF_SPLICE	YES	60	941	0.09	0.01	0.0106	0.0213	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	NCIH841_LUNG	0.01	0.09	0.0319	FALSE	14	18	7	11	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	3	0	RP5-857K21.11	1020	chr1:569775:+	MTATP6P1	5180	chr1:569708:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0159	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	1	1	0.0159	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	RP5-857K21.11--MTATP6P1	3	0	RP5-857K21.11	1181	chr1:569936:+	MTATP6P1	5219	chr1:569747:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0159	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH841_LUNG	1	1	0.0159	TRUE	16	42	4	10	0	FALSE	ACH-000292
NCIH841_LUNG	SAMD5--SASH1	3	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NCIH841_LUNG	1	1	0.0159	TRUE	53	396	64	110	0	FALSE	ACH-000292
NCIH841_LUNG	ERBB4--LL0XNC01-237H1.2	2	3	ERBB4	3912	chr2:212989477:-	LL0XNC01-237H1.2	47186	chrX:102152502:+	ONLY_REF_SPLICE	YES	142	8	0.03	0.38	0.0106	0.0159	ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,LL0XNC01-237H1.2->chrX:102139342-102161086:+	NCIH841_LUNG	0.03	0.38	0.0265	TRUE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-108K3.1--GLDN	2	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0106	0.0106	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH841_LUNG	0.67	1	0.0212	FALSE	0	30	1	55	0	FALSE	ACH-000292
NCIH841_LUNG	ZNF217--BCAS1	2	2	ZNF217	3627	chr20:52214170:-	BCAS1	29073	chr20:52583612:-	ONLY_REF_SPLICE	YES	242	2	0.02	0.67	0.0106	0.0106	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	NCIH841_LUNG	0.02	0.67	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	AGBL4--AGBL4-IT1	2	1	AGBL4	3399	chr1:50162985:-	AGBL4-IT1	30507	chr1:49840016:-	ONLY_REF_SPLICE	YES	11	0	0.21	1	0.0106	0.0053	NEIGHBORS_OVERLAP:-:-:[97884],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,AGBL4-IT1->AGBL4_intronic_transcript_1,chr1:49839873-49937757:-	NCIH841_LUNG	0.21	1	0.0159	FALSE	75	131	5	14	0	FALSE	ACH-000292
NCIH841_LUNG	ERBB4--LL0XNC01-237H1.2	1	5	ERBB4	6418	chr2:212812155:-	LL0XNC01-237H1.2	48377	chrX:102155678:+	ONLY_REF_SPLICE	YES	54	91	0.1	0.06	0.0053	0.0266	ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,LL0XNC01-237H1.2->chrX:102139342-102161086:+	NCIH841_LUNG	0.06	0.1	0.0319	TRUE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-108K3.1--GLDN	2	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0106	0.0053	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH841_LUNG	0.6	1	0.0159	FALSE	1	20	0	46	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-444D3.1--SOX5	1	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	21326	chr12:23908658:-	ONLY_REF_SPLICE	YES	0	70	1	0.08	0.0053	0.0266	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH841_LUNG	0.08	1	0.0319	TRUE	0	1	0	5	0	FALSE	ACH-000292
NCIH841_LUNG	BUB3--SPECC1L	2	0	BUB3	6355	chr10:124922344:+	SPECC1L	14168	chr22:24698163:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	BUB3->BUB3,_mitotic_checkpoint_protein,chr10:124913793-124924886:+,SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	CDK13--POU6F2	2	0	CDK13	10205	chr7:40087476:+	POU6F2	39282	chr7:39413076:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,POU6F2->Oncogene{Bushman},POU_class_6_homeobox_2,chr7:39017598-39532694:+	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	CPSF6--HOXC5	2	0	CPSF6	11046	chr12:69656342:+	HOXC5	21319	chr12:54428062:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,HOXC5->chr12:54426637-54429142:+,homeobox_C5	NCIH841_LUNG	1	1	0.0106	TRUE	0	3	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	DHCR7--GCA	2	0	DHCR7	9366	chr11:71148858:-	GCA	20577	chr2:163204088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	DHCR7->7-dehydrocholesterol_reductase,chr11:71139239-71163914:-,GCA->chr2:163175350-163228105:+,grancalcin	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH841_LUNG	1	1	0.0106	TRUE	0	9	0	44	1	FALSE	ACH-000292
NCIH841_LUNG	EDC3--FEM1B	2	0	EDC3	1413	chr15:74988221:-	FEM1B	22979	chr15:68581945:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	EDC3->chr15:74922899-74988633:-,enhancer_of_mRNA_decapping_3,FEM1B->chr15:68570141-68588203:+,fem-1_homolog_B	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	EIF3E--THAP4	2	0	EIF3E	6301	chr8:109260842:-	THAP4	38695	chr2:242524140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E,THAP4->THAP_domain_containing_4,chr2:242523820-242576864:-	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	GTDC1--TTC21B	2	0	GTDC1	1130	chr2:145090006:-	TTC21B	45451	chr2:166789567:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,TTC21B->chr2:166713985-166810353:-,tetratricopeptide_repeat_domain_21B	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	ING3--IVNS1ABP	2	0	ING3	3654	chr7:120595678:+	IVNS1ABP	24881	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	{Klijn_CCL:Sarcomatoid=1},ING3->Oncogene{Bushman},chr7:120590803-120617270:+,inhibitor_of_growth_family_member_3,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NCIH841_LUNG	1	1	0.0106	TRUE	0	1	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	KLHL23--SRSF1	2	0	KLHL23	2931	chr2:170554041:+	SRSF1	19693	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	KLHL23->chr2:170550998-170633499:+,kelch_like_family_member_23,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	NTN1--STX8	2	0	NTN1	4039	chr17:9066318:+	STX8	29316	chr17:9281970:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:2=pct:0.6],Esophagus=[count:2=pct:0.5]},GTEx_v2:{count=20;pct=0.23%;dist=Esophagus_-_Muscularis=7,Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Aorta=2,Stomach=1,Breast_-_Mammary_Tissue=1,Uterus=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Brain_-_Cortex=1},LOCAL_INVERSION:+:-:[6471],NTN1->chr17:8924859-9147317:+,netrin_1,STX8->chr17:9153788-9479908:-,syntaxin_8	NCIH841_LUNG	1	1	0.0106	TRUE	1	4	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	POLR2J3--ZADH2	2	0	POLR2J3	5847	chr7:102207444:-	ZADH2	21915	chr18:72914295:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	RP11-603B24.1--HERC2P3	1	4	RP11-603B24.1	1304	chr15:22567225:+	HERC2P3	31465	chr15:20588709:-	ONLY_REF_SPLICE	YES	4	44	0.56	0.1	0.0053	0.0213	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	NCIH841_LUNG	0.1	0.56	0.0266	TRUE	5	1	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	RP13-188A5.1--KLF8	1	4	RP13-188A5.1	1678	chrX:55935233:+	KLF8	6745	chrX:56259591:+	ONLY_REF_SPLICE	NO	9	0	0.36	1	0.0053	0.0213	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	NCIH841_LUNG	0.36	1	0.0266	TRUE	3	12	3	6	0	FALSE	ACH-000292
NCIH841_LUNG	SEMA3C--PTPRK	2	0	SEMA3C	2619	chr7:80548144:-	PTPRK	39458	chr6:128718833:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	SEMA3C->chr7:80371854-80551675:-,semaphorin_3C,PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	SETD8--CDK2AP1	2	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	18	0	TRUE	ACH-000292
NCIH841_LUNG	SH3BGRL2--PHIP	2	0	SH3BGRL2	2410	chr6:80383516:+	PHIP	13439	chr6:79770535:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},SH3BGRL2->Oncogene{Bushman},SH3_domain_binding_glutamate_rich_protein_like_2,chr6:80341000-80413372:+,PHIP->Oncogene{Bushman},chr6:79645584-79787953:-,pleckstrin_homology_domain_interacting_protein	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	SUPT3H--SMCO2	2	0	SUPT3H	2744	chr6:45332938:-	SMCO2	31526	chr12:27654856:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0	SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	NCIH841_LUNG	1	1	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	AC002066.1--AC073130.1	1	3	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	45	0	0.08	1	0.0053	0.0159	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	NCIH841_LUNG	0.08	1	0.0212	FALSE	0	1	1	30	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-108K3.1--RP11-108K3.2	1	3	RP11-108K3.1	1194	chr15:51329878:+	RP11-108K3.2	6562	chr15:51608038:+	ONLY_REF_SPLICE	NO	2	0	0.67	1	0.0053	0.0159	NEIGHBORS[21929],RP11-108K3.1->chr15:51329685-51586109:+,RP11-108K3.2->chr15:51608038-51614193:+	NCIH841_LUNG	0.67	1	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-108K3.1--RP11-108K3.2	1	3	RP11-108K3.1	1194	chr15:51329878:+	RP11-108K3.2	8519	chr15:51613806:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0053	0.0159	NEIGHBORS[21929],RP11-108K3.1->chr15:51329685-51586109:+,RP11-108K3.2->chr15:51608038-51614193:+	NCIH841_LUNG	0.67	1	0.0212	FALSE	0	5	0	3	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	22413	chr12:23893973:-	ONLY_REF_SPLICE	NO	0	65	1	0.06	0.0053	0.0159	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH841_LUNG	0.06	1	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	ARL15--ZMYM4	1	2	ARL15	4552	chr5:53450410:-	ZMYM4	21629	chr1:35846860:+	ONLY_REF_SPLICE	YES	49	170	0.06	0.02	0.0053	0.0106	ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4	NCIH841_LUNG	0.02	0.06	0.0159	TRUE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	NRIP1--AF127936.7	1	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	29	0	0.09	1	0.0053	0.0106	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH841_LUNG	0.09	1	0.0159	FALSE	125	705	46	456	0	FALSE	ACH-000292
NCIH841_LUNG	AC027763.2--ANKFY1	1	1	AC027763.2	3633	chr17:6905803:-	ANKFY1	42940	chr17:4074155:-	ONLY_REF_SPLICE	YES	156	98	0.01	0.02	0.0053	0.0053	AC027763.2->chr17:6779954-6915668:-,ANKFY1->ankyrin_repeat_and_FYVE_domain_containing_1,chr17:4067201-4167274:-	NCIH841_LUNG	0.01	0.02	0.0106	FALSE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	AGBL4--AGBL4-IT1	1	1	AGBL4	2274	chr1:50317068:-	AGBL4-IT1	30507	chr1:49840016:-	ONLY_REF_SPLICE	NO	12	0	0.14	1	0.0053	0.0053	NEIGHBORS_OVERLAP:-:-:[97884],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,AGBL4-IT1->AGBL4_intronic_transcript_1,chr1:49839873-49937757:-	NCIH841_LUNG	0.14	1	0.0106	FALSE	0	4	0	2	0	FALSE	ACH-000292
NCIH841_LUNG	AGBL4--AGBL4-IT1	1	1	AGBL4	3399	chr1:50162985:-	AGBL4-IT1	29435	chr1:49888806:-	ONLY_REF_SPLICE	YES	11	0	0.15	1	0.0053	0.0053	NEIGHBORS_OVERLAP:-:-:[97884],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,AGBL4-IT1->AGBL4_intronic_transcript_1,chr1:49839873-49937757:-	NCIH841_LUNG	0.15	1	0.0106	FALSE	9	1	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	AKAP12--MTHFD1L	1	1	AKAP12	4081	chr6:151647020:+	MTHFD1L	20143	chr6:151197226:+	ONLY_REF_SPLICE	NO	626	214	0	0.01	0.0053	0.0053	{Klijn_CCL:Skin=1,Lung=1},AKAP12->A-kinase_anchoring_protein_12,Oncogene{Bushman},chr6:151561134-151679692:+,MTHFD1L->chr6:151186685-151423023:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_1-like	NCIH841_LUNG	0	0.01	0.0106	FALSE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	C1S--NPHP3	1	1	C1S	1111	chr12:7096461:+	NPHP3	20837	chr3:132438674:-	ONLY_REF_SPLICE	NO	7	43	0.22	0.04	0.0053	0.0053	C1S->chr12:7096351-7178336:+,complement_component_1,_s_subcomponent,NPHP3->chr3:132276986-132441303:-,nephronophthisis_3_(adolescent)	NCIH841_LUNG	0.04	0.22	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	CBFB--CSDE1	1	1	CBFB	5896	chr16:67116211:+	CSDE1	21523	chr1:115282346:-	ONLY_REF_SPLICE	YES	369	2705	0.01	0	0.0053	0.0053	CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	NCIH841_LUNG	0	0.01	0.0106	FALSE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	CPQ--SDC2	1	1	CPQ	1176	chr8:97657630:+	SDC2	25442	chr8:97549528:+	ONLY_REF_SPLICE	NO	99	2239	0.02	0	0.0053	0.0053	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	NCIH841_LUNG	0	0.02	0.0106	FALSE	0	4	0	2	0	FALSE	ACH-000292
NCIH841_LUNG	DPH1--CCDC42	1	1	DPH1	1121	chr17:1933524:+	CCDC42	18228	chr17:8638929:-	ONLY_REF_SPLICE	YES	11	1	0.15	0.67	0.0053	0.0053	DPH1->Oncogene{Bushman},chr17:1933404-1946724:+,diphthamide_biosynthesis_1,CCDC42->chr17:8633252-8648537:-,coiled-coil_domain_containing_42	NCIH841_LUNG	0.15	0.67	0.0106	TRUE	0	0	0	1	0	TRUE	ACH-000292
NCIH841_LUNG	DPH6-AS1--RP11-684B21.1	1	1	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0053	0.0053	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	NCIH841_LUNG	0.33	1	0.0106	TRUE	17	119	17	33	0	FALSE	ACH-000292
NCIH841_LUNG	FASN--HSPA8	1	1	FASN	17747	chr17:80038246:-	HSPA8	24679	chr11:122932039:-	ONLY_REF_SPLICE	YES	1195	409	0	0	0.0053	0.0053	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,HSPA8->chr11:122928197-122933938:-,heat_shock_protein_family_A_(Hsp70)_member_8	NCIH841_LUNG	0	0	0.0106	FALSE	0	0	0	2	0	FALSE	ACH-000292
NCIH841_LUNG	FNDC3B--PLD1	1	1	FNDC3B	6332	chr3:171851336:+	PLD1	74596	chr3:171379960:-	ONLY_REF_SPLICE	YES	385	114	0.01	0.02	0.0053	0.0053	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Coronary=1,Esophagus_-_Mucosa=1},FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,PLD1->Oncogene{Bushman},chr3:171318195-171528740:-,phospholipase_D1	NCIH841_LUNG	0.01	0.02	0.0106	FALSE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	GNPTG--EHMT1	1	1	GNPTG	1384	chr16:1402307:+	EHMT1	12903	chr9:140605419:+	ONLY_REF_SPLICE	YES	426	0	0	1	0.0053	0.0053	GNPTG->N-acetylglucosamine-1-phosphate_transferase_gamma_subunit,chr16:1401924-1413352:+,EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1	NCIH841_LUNG	0	1	0.0106	FALSE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	HNRNPA2B1--IVNS1ABP	1	1	HNRNPA2B1	1958	chr7:26240192:-	IVNS1ABP	21060	chr1:185274775:-	ONLY_REF_SPLICE	NO	7196	1193	0	0	0.0053	0.0053	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NCIH841_LUNG	0	0	0.0106	FALSE	0	0	0	4	0	FALSE	ACH-000292
NCIH841_LUNG	KIAA0825--FAM172A	1	1	KIAA0825	29251	chr5:93720073:-	FAM172A	35602	chr5:93410474:-	ONLY_REF_SPLICE	YES	5	82	0.29	0.02	0.0053	0.0053	NEIGHBORS[41267],KIAA0825->KIAA0825,chr5:93488671-93954309:-,FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A	NCIH841_LUNG	0.02	0.29	0.0106	FALSE	0	1	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	MEIS2--C15orf41	1	1	MEIS2	13726	chr15:37242525:-	C15orf41	31752	chr15:36936479:+	ONLY_REF_SPLICE	YES	333	642	0.01	0	0.0053	0.0053	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:-:+:[78957],MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,C15orf41->chr15:36871812-37102449:+,chromosome_15_open_reading_frame_41	NCIH841_LUNG	0	0.01	0.0106	FALSE	0	0	0	2	0	FALSE	ACH-000292
NCIH841_LUNG	PPHLN1--YAF2	1	1	PPHLN1	11329	chr12:42749024:+	YAF2	46369	chr12:42555567:-	ONLY_REF_SPLICE	YES	656	179	0	0.01	0.0053	0.0053	LOCAL_INVERSION:+:-:[98],PPHLN1->chr12:42632249-42853517:+,periphilin_1,YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-	NCIH841_LUNG	0	0.01	0.0106	FALSE	0	0	0	2	0	FALSE	ACH-000292
NCIH841_LUNG	PRDM10--APLP2	1	1	PRDM10	8935	chr11:129812321:-	APLP2	37010	chr11:129979324:+	ONLY_REF_SPLICE	YES	30	3384	0.06	0	0.0053	0.0053	LOCAL_INVERSION:-:+:[67002],PRDM10->PR_domain_10,chr11:129769601-129872730:-,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	NCIH841_LUNG	0	0.06	0.0106	FALSE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	PRR16--CTD-2334D19.1	1	1	PRR16	3559	chr5:119816988:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	27	0	0.07	1	0.0053	0.0053	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH841_LUNG	0.07	1	0.0106	FALSE	1	5	0	12	0	FALSE	ACH-000292
NCIH841_LUNG	PTMA--PTMS	1	1	PTMA	6593	chr2:232577226:+	PTMS	14193	chr12:6879558:+	ONLY_REF_SPLICE	YES	7505	1458	0	0	0.0053	0.0053	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH841_LUNG	0	0	0.0106	FALSE	0	0	0	16	0	FALSE	ACH-000292
NCIH841_LUNG	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	23013	chrX:10491227:-	ONLY_REF_SPLICE	YES	53	698	0.04	0	0.0053	0.0053	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH841_LUNG	0	0.04	0.0106	FALSE	0	3	0	6	0	FALSE	ACH-000292
NCIH841_LUNG	RPL15--EEF1D	1	1	RPL15	1695	chr3:23958730:+	EEF1D	22275	chr8:144669022:-	ONLY_REF_SPLICE	NO	16	267	0.11	0.01	0.0053	0.0053	RPL15->chr3:23958036-23965183:+,ribosomal_protein_L15,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	NCIH841_LUNG	0.01	0.11	0.0106	FALSE	0	0	0	2	0	FALSE	ACH-000292
NCIH841_LUNG	SF1--FUS	1	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	1172	1871	0	0	0.0053	0.0053	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH841_LUNG	0	0	0.0106	FALSE	5	20	0	32	0	FALSE	ACH-000292
NCIH841_LUNG	SLC25A35--AC090286.4	1	1	SLC25A35	5889	chr17:8192892:-	AC090286.4	12291	chr17:18855836:-	ONLY_REF_SPLICE	YES	273	0	0.01	1	0.0053	0.0053	SLC25A35->chr17:8191081-8198661:-,solute_carrier_family_25_member_35,AC090286.4->chr17:18854938-18857462:-	NCIH841_LUNG	0.01	1	0.0106	FALSE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	SUN3--ZNF638	1	1	SUN3	11206	chr7:48033912:-	ZNF638	43323	chr2:71623271:+	ONLY_REF_SPLICE	YES	852	351	0	0.01	0.0053	0.0053	SUN3->Sad1_and_UNC84_domain_containing_3,chr7:48026745-48068716:-,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	NCIH841_LUNG	0	0.01	0.0106	FALSE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	TMEM194B--NAB1	1	1	TMEM194B	8894	chr2:191375087:-	NAB1	23405	chr2:191523884:+	ONLY_REF_SPLICE	YES	24	203	0.08	0.01	0.0053	0.0053	TMEM194B->chr2:191369068-191399448:-,NAB1->NGFI-A_binding_protein_1,chr2:191511472-191557492:+	NCIH841_LUNG	0.01	0.08	0.0106	FALSE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	YES	101	0	0.02	1	0.0053	0.0053	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH841_LUNG	0.02	1	0.0106	FALSE	28	14	1	23	0	FALSE	ACH-000292
NCIH841_LUNG	XPR1--STX6	1	1	XPR1	1267	chr1:180601406:+	STX6	27660	chr1:180974599:-	ONLY_REF_SPLICE	YES	430	281	0	0.01	0.0053	0.0053	LOCAL_INVERSION:+:-:[82474],XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,STX6->chr1:180941861-180992047:-,syntaxin_6	NCIH841_LUNG	0	0.01	0.0106	FALSE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	3957	161	0	0.01	0.0053	0.0053	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NCIH841_LUNG	0	0.01	0.0106	FALSE	6	50	7	115	0	FALSE	ACH-000292
NCIH841_LUNG	ZFYVE16--TBCA	1	1	ZFYVE16	29090	chr5:79770649:+	TBCA	38887	chr5:77004172:-	ONLY_REF_SPLICE	YES	289	1943	0.01	0	0.0053	0.0053	GTEx&tcga_normals:1/3694=0.03%,ZFYVE16->chr5:79703832-79775169:+,zinc_finger_FYVE-type_containing_16,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	NCIH841_LUNG	0	0.01	0.0106	FALSE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	ZNF214--SBF2	1	1	ZNF214	1296	chr11:7041304:-	SBF2	36605	chr11:9879943:-	ONLY_REF_SPLICE	YES	26	114	0.07	0.02	0.0053	0.0053	ZNF214->chr11:7020549-7041599:-,zinc_finger_protein_214,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	NCIH841_LUNG	0.02	0.07	0.0106	TRUE	0	0	0	1	0	FALSE	ACH-000292
NCIH841_LUNG	ZNF738--DAP3	1	1	ZNF738	7035	chr19:21558766:+	DAP3	28866	chr1:155708400:+	ONLY_REF_SPLICE	NO	216	63	0.01	0.03	0.0053	0.0053	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	NCIH841_LUNG	0.01	0.03	0.0106	FALSE	0	0	0	4	0	FALSE	ACH-000292
SNU1105_CENTRAL_NERVOUS_SYSTEM	CD63--TGFBI	51	1	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	2273	7348	0.02	0.01	0.6585	0.0129	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.6714	TRUE	0	0	0	14	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	47	8	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6068	0.1033	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.7101	TRUE	508	994	45	981	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	MAPK1--MAP7D1	33	6	MAPK1	1359	chr22:22221612:-	MAP7D1	25354	chr1:36636572:+	ONLY_REF_SPLICE	YES	18	74	0.68	0.35	0.4261	0.0775	MAPK1->Oncogene{Bushman},chr22:22108789-22221970:-,mitogen-activated_protein_kinase_1,MAP7D1->MAP7_domain_containing_1,chr1:36621180-36646450:+	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.35	0.68	0.5036	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	24	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	116	5	0.18	0.83	0.3099	0.0129	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.18	0.83	0.3228	TRUE	519	3926	326	965	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	CTB-78F1.2--TENM2	21	0	CTB-78F1.2	1045	chr5:167148412:+	TENM2	11546	chr5:167302991:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2711	0	NEIGHBORS_OVERLAP:+:+:[7761],CTB-78F1.2->chr5:167148368-167156129:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.2711	FALSE	1	3	0	6	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	FOCAD--SLC24A2	19	6	FOCAD	12964	chr9:20770237:+	SLC24A2	64909	chr9:19622297:-	ONLY_REF_SPLICE	YES	13	0	0.66	1	0.2453	0.0775	FOCAD->chr9:20658308-20995954:+,focadhesin,SLC24A2->chr9:19507450-19786926:-,solute_carrier_family_24_member_2	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.66	1	0.3228	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	19	4	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2453	0.0516	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.2969	TRUE	254	575	65	124	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	SLC9B2--BANK1	17	4	SLC9B2	5471	chr4:103997341:-	BANK1	31259	chr4:102590560:+	ONLY_REF_SPLICE	YES	13	0	0.62	1	0.2195	0.0516	SLC9B2->chr4:103941025-104006986:-,solute_carrier_family_9_member_B2,BANK1->B-cell_scaffold_protein_with_ankyrin_repeats_1,chr4:102332443-102995969:+	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.62	1	0.2711	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	PAPSS2--LINC00864	17	2	PAPSS2	1396	chr10:89419765:+	LINC00864	20886	chr10:89157957:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2195	0.0258	PAPSS2->3'-phosphoadenosine_5'-phosphosulfate_synthase_2,chr10:89419370-89507462:+,LINC00864->chr10:89156780-89184549:-,long_intergenic_non-protein_coding_RNA_864	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.2453	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	16	4	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	624	1	0.03	0.95	0.2066	0.0516	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.03	0.95	0.2582	TRUE	1	0	0	97	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	16	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2066	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.2066	TRUE	0	0	0	518	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	15	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	10	1	0.64	0.1937	0.0387	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.64	1	0.2324	TRUE	465	1949	224	605	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	14	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	4	1	0.82	0.1808	0.0516	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.82	1	0.2324	TRUE	458	1351	185	561	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	CYR61--ACTB	12	0	CYR61	3134	chr1:86048577:+	ACTB	12895	chr7:5567955:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1549	0	GTEx&tcga_normals:3/3694=0.08%,CYR61->Oncogene{Bushman},chr1:86046444-86049645:+,cysteine_rich_angiogenic_inducer_61,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.1549	TRUE	0	0	0	2	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	11	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	39	1	0.24	0.142	0.0129	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.24	1	0.1549	TRUE	347	1186	183	220	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	11	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.142	0.0129	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.1549	FALSE	462	80	0	856	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	8	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	33	22	0.3	0.39	0.1033	0.0775	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.3	0.39	0.1808	TRUE	267	562	48	632	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	MYH9--SPP1	7	3	MYH9	34688	chr22:36684944:-	SPP1	44649	chr4:88896874:+	INCL_NON_REF_SPLICE	YES	2593	0	0	1	0.0904	0.0387	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SNU1105_CENTRAL_NERVOUS_SYSTEM	0	1	0.1291	TRUE	0	0	0	2	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	7	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0904	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0904	TRUE	0	0	0	434	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	5	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	34	21	0.24	0.34	0.0646	0.0775	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.24	0.34	0.1421	TRUE	267	562	48	632	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	4	6	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	568	1	0.02	0.91	0.0516	0.0775	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.02	0.91	0.1291	TRUE	1	0	0	97	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	MYH9--SPP1	5	0	MYH9	25917	chr22:36696301:-	SPP1	44641	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0646	TRUE	0	0	0	2	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	THBS1--TAGLN2	5	0	THBS1	1093	chr15:39873372:+	TAGLN2	27637	chr1:159888329:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,TAGLN2->chr1:159887897-159895522:-,transgelin_2	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	PKM--PPIA	4	3	PKM	16758	chr15:72494872:-	PPIA	23273	chr7:44836291:+	INCL_NON_REF_SPLICE	YES	4596	0	0	1	0.0516	0.0387	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	SNU1105_CENTRAL_NERVOUS_SYSTEM	0	1	0.0903	FALSE	0	0	0	18	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	EHMT1--ZMYND19	4	0	EHMT1	1058	chr9:140513501:+	ZMYND19	52851	chr9:140483170:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0516	0	LOCAL_INVERSION:+:-:[28502],EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,ZMYND19->chr9:140476531-140484942:-,zinc_finger_MYND-type_containing_19	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0516	FALSE	462	80	0	856	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--RP11-781A6.1	4	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0516	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0516	TRUE	94	160	11	37	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	RPS6KB1--VMP1	3	1	RPS6KB1	14496	chr17:58013902:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	45	149	0.08	0.03	0.0387	0.0129	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.03	0.08	0.0516	TRUE	0	0	0	1	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	CTB-78F1.2--TENM2	3	0	CTB-78F1.2	1045	chr5:167148412:+	TENM2	14028	chr5:167379593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0387	0	NEIGHBORS_OVERLAP:+:+:[7761],CTB-78F1.2->chr5:167148368-167156129:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0387	FALSE	1	4	0	8	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	NGFR--MT-ND4L	3	0	NGFR	8946	chr17:47590227:+	MT-ND4L	14100	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	NGFR->Oncogene{Bushman},chr17:47572655-47592379:+,nerve_growth_factor_receptor,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0387	FALSE	0	0	0	2	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	2	2	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	510	178	0.01	0.02	0.0258	0.0258	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0516	FALSE	38	10	2	29	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	LRFN5--SLC9B2	2	0	LRFN5	10004	chr14:42236232:+	SLC9B2	33132	chr4:103966153:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	LRFN5->chr14:42076773-42373752:+,leucine_rich_repeat_and_fibronectin_type_III_domain_containing_5,SLC9B2->chr4:103941025-104006986:-,solute_carrier_family_9_member_B2	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	PCBP1-AS1--MED16	2	0	PCBP1-AS1	32810	chr2:70215874:-	MED16	53121	chr19:871253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,MED16->chr19:867962-893218:-,mediator_complex_subunit_16	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	RNF152--RP11-879F14.1	2	0	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0258	FALSE	275	472	65	43	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	TGFBI--FLNA	1	2	TGFBI	17227	chr5:135397268:+	FLNA	31125	chrX:153590155:-	ONLY_REF_SPLICE	YES	9572	2216	0	0	0.0129	0.0258	TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced,FLNA->chrX:153576892-153603006:-,filamin_A	SNU1105_CENTRAL_NERVOUS_SYSTEM	0	0	0.0387	FALSE	0	0	0	1	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	ACTA2--RP11-57C13.3	1	1	ACTA2	1452	chr10:90750696:-	RP11-57C13.3	16423	chr10:89382237:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0.0129	ACTA2->actin,_alpha_2,_smooth_muscle,_aorta,chr10:90694831-90751147:-,RP11-57C13.3->chr10:89369920-89419760:-	SNU1105_CENTRAL_NERVOUS_SYSTEM	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	BRWD1--ZNF346	1	1	BRWD1	17607	chr21:40636386:-	ZNF346	61636	chr5:176477704:+	ONLY_REF_SPLICE	YES	12	19	0.14	0.1	0.0129	0.0129	BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.1	0.14	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	7488	chr5:95966789:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	39	1	0.05	0.0129	0.0129	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.0258	TRUE	18	50	10	12	0	FALSE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	LYPLAL1--RRP15	1	1	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	NO	53	63	0.04	0.03	0.0129	0.0129	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.03	0.04	0.0258	TRUE	0	12	0	13	2	TRUE	ACH-000368
SNU1105_CENTRAL_NERVOUS_SYSTEM	TRIO--DNAH5	1	1	TRIO	38970	chr5:14420130:+	DNAH5	77545	chr5:13931353:-	ONLY_REF_SPLICE	NO	115	0	0.02	1	0.0129	0.0129	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,DNAH5->chr5:13690440-13944652:-,dynein_axonemal_heavy_chain_5	SNU1105_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0258	TRUE	0	0	0	1	0	FALSE	ACH-000368
NCIH1385_LUNG	MT-ND5--MT-ATP8	353	11	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5586	7	0.06	0.98	3.9436	0.1229	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0.06	0.98	4.0665	FALSE	43	37	8	105	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	275	226	MT-ND4	1180	chrM:10939:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	18	0	0.97	1	3.0722	2.5248	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.97	1	5.597	FALSE	344	826	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TN	144	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6087	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1385_LUNG	1	1	1.6087	FALSE	369	2501	205	193	0	FALSE	ACH-000737
NCIH1385_LUNG	TIMM23B--RP11-175I17.2	107	28	TIMM23B	6950	chr10:51387763:+	RP11-175I17.2	16572	chr10:46358562:-	ONLY_REF_SPLICE	YES	0	10	1	0.93	1.1954	0.3128	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Ovary=[count:1=pct:1.9]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,RP11-175I17.2->chr10:46349541-46411619:-	NCIH1385_LUNG	0.93	1	1.5082	TRUE	0	16	0	2	16	TRUE	ACH-000737
NCIH1385_LUNG	TIMM23--RP11-592B15.3	106	29	TIMM23	6952	chr10:51606988:-	RP11-592B15.3	21430	chr10:51262177:-	ONLY_REF_SPLICE	YES	91	10	0.6	0.93	1.1842	0.324	GTEx_FI:{Stomach=[count:2=pct:2.2],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Nerve=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Breast=[count:1=pct:0.9],Muscle=[count:1=pct:0.4]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-592B15.3->chr10:51253146-51371338:-	NCIH1385_LUNG	0.6	0.93	1.5082	TRUE	8	39	3	4	0	FALSE	ACH-000737
NCIH1385_LUNG	RAB11B--ANGPTL4	106	2	RAB11B	1476	chr19:8455340:+	ANGPTL4	11657	chr19:8430838:+	ONLY_REF_SPLICE	YES	16	32	0.87	0.77	1.1842	0.0223	LOCAL_REARRANGEMENT:+:[15608],RAB11B->RAB11B,_member_RAS_oncogene_family,chr19:8454865-8469318:+,ANGPTL4->angiopoietin_like_4,chr19:8428173-8439257:+	NCIH1385_LUNG	0.77	0.87	1.2065	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	LINC00969--XPO5	97	16	LINC00969	1104	chr3:195385036:+	XPO5	62493	chr6:43501744:-	ONLY_REF_SPLICE	YES	22	53	0.84	0.68	1.0837	0.1787	LINC00969->chr3:195384933-195460422:+,long_intergenic_non-protein_coding_RNA_969,XPO5->chr6:43490072-43543812:-,exportin_5	NCIH1385_LUNG	0.68	0.84	1.2624	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RP11-1319K7.1--OCLN	87	41	RP11-1319K7.1	12960	chr5:69394512:-	OCLN	23178	chr5:68830521:+	ONLY_REF_SPLICE	YES	26	6	0.83	0.96	0.9719	0.458	GTEx_FI:{Blood=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Breast=[count:2=pct:1.8],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Spleen=[count:1=pct:0.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3]},RP11-1319K7.1->chr5:69390202-69424261:-,OCLN->chr5:68788119-68853931:+,occludin	NCIH1385_LUNG	0.83	0.96	1.4299	TRUE	18	3	1	7	0	FALSE	ACH-000737
NCIH1385_LUNG	RP4-565E6.1--HYDIN	72	21	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.8044	0.2346	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1385_LUNG	1	1	1.039	TRUE	456	1387	91	133	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND6--MT-TE	64	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.715	0.0559	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1385_LUNG	1	1	0.7709	FALSE	499	1288	110	792	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	4	231	MT-ND4	2305	chrM:12064:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	3	0	0.99	1	0.0447	2.5807	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.99	1	2.6254	FALSE	268	700	35	284	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	3	230	MT-ND4	1545	chrM:11304:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	678	0	0.26	1	0.0335	2.5695	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.26	1	2.603	FALSE	344	827	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	4	226	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	20	1	0.92	1	0.0447	2.5248	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.92	1	2.5695	FALSE	344	826	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	4	224	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	17	1	0.93	1	0.0447	2.5025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.93	1	2.5472	FALSE	344	826	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	20	151	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	4940	0	0.03	1	0.2234	1.6869	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.03	1	1.9103	FALSE	344	827	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	DPH7--PTP4A3	56	0	DPH7	1297	chr9:140473091:-	PTP4A3	14726	chr8:142431487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6256	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:10=pct:2.7],Heart=[count:7=pct:2.8],Pituitary=[count:4=pct:7.7],Nerve=[count:2=pct:1.2],Esophagus=[count:2=pct:0.5],Colon=[count:2=pct:1.0],Lung=[count:2=pct:1.2],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Kidney=[count:1=pct:7.1],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},GTEx_v2:{count=46;pct=0.53%;dist=Artery_-_Tibial=9,Heart_-_Atrial_Appendage=9,Pituitary=6,Cells_-_EBV-transformed_lymphocytes=5,Artery_-_Aorta=3,Lung=2,Artery_-_Coronary=2,Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hypothalamus=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1,Testis=1},DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7,PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3	NCIH1385_LUNG	1	1	0.6256	TRUE	29	213	5	17	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	12	166	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	1	0.97	0.99	0.1341	1.8545	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.97	0.99	1.9886	FALSE	344	821	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TC	51	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5698	0.0447	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1385_LUNG	1	1	0.6145	FALSE	462	80	0	856	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	3	195	MT-ND4	1081	chrM:10840:+	MT-ND4L	5526	chrM:10617:+	INCL_NON_REF_SPLICE	NO	6	1	0.97	0.99	0.0335	2.1785	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.97	0.99	2.212	FALSE	344	826	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	6	158	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	12	0	0.93	1	0.067	1.7651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.93	1	1.8321	FALSE	344	826	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	GIT2--ORAI1	42	11	GIT2	13286	chr12:110397652:-	ORAI1	35814	chr12:122078947:+	ONLY_REF_SPLICE	YES	28	8	0.65	0.87	0.4692	0.1229	GIT2->GIT_ArfGAP_2,chr12:110367607-110434194:-,ORAI1->ORAI_calcium_release-activated_calcium_modulator_1,chr12:122064455-122080583:+	NCIH1385_LUNG	0.65	0.87	0.5921	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	3	162	MT-ND4	1301	chrM:11060:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	48	0	0.77	1	0.0335	1.8098	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.77	1	1.8433	FALSE	344	827	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	3	154	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	45	0	0.78	1	0.0335	1.7204	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.78	1	1.7539	FALSE	344	827	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND5--MT-ATP8	34	26	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5	0	0.92	1	0.3798	0.2905	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0.92	1	0.6703	FALSE	43	37	8	105	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	3	149	MT-ND4	1298	chrM:11057:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	47	0	0.76	1	0.0335	1.6646	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.76	1	1.6981	FALSE	344	827	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	4	142	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	53	0	0.73	1	0.0447	1.5864	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.73	1	1.6311	FALSE	344	827	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND6--MT-TE	33	22	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.92	1	0.3687	0.2458	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1385_LUNG	0.92	1	0.6145	FALSE	499	1288	110	792	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TN	10	97	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1117	1.0837	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1385_LUNG	1	1	1.1954	FALSE	369	2501	205	193	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND6--MT-TE	31	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3463	0.0559	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1385_LUNG	1	1	0.4022	FALSE	499	1288	110	792	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND5--MT-ATP8	30	5	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6881	60	0.01	0.37	0.3352	0.0559	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0.01	0.37	0.3911	FALSE	43	37	8	105	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TN	18	51	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2011	0.5698	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1385_LUNG	1	1	0.7709	FALSE	369	2501	205	193	0	FALSE	ACH-000737
NCIH1385_LUNG	RPH3AL--FAM101B	30	3	RPH3AL	2444	chr17:202503:-	FAM101B	29953	chr17:295730:-	ONLY_REF_SPLICE	YES	20	0	0.62	1	0.3352	0.0335	LOCAL_REARRANGEMENT:-:[53724],RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains),FAM101B->chr17:289769-295730:-,family_with_sequence_similarity_101_member_B	NCIH1385_LUNG	0.62	1	0.3687	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	3	110	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	24	0	0.82	1	0.0335	1.2289	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.82	1	1.2624	FALSE	344	826	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	RAB11B--ANGPTL4	28	7	RAB11B	1476	chr19:8455340:+	ANGPTL4	10223	chr19:8429090:+	ONLY_REF_SPLICE	YES	16	2	0.69	0.95	0.3128	0.0782	LOCAL_REARRANGEMENT:+:[15608],RAB11B->RAB11B,_member_RAS_oncogene_family,chr19:8454865-8469318:+,ANGPTL4->angiopoietin_like_4,chr19:8428173-8439257:+	NCIH1385_LUNG	0.69	0.95	0.391	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ND5--MT-ATP8	29	1	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	6892	4	0	0.88	0.324	0.0112	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	0.88	0.3352	FALSE	41	30	6	102	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TN	29	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.324	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1385_LUNG	1	1	0.324	FALSE	369	2501	205	193	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TN	9	69	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1005	0.7708	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1385_LUNG	1	1	0.8713	FALSE	369	2501	205	193	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	26	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2905	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	1	1	0.2905	FALSE	230	193	14	283	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TN	18	32	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2011	0.3575	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1385_LUNG	1	1	0.5586	FALSE	369	2501	205	193	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	4	78	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	9	0	0.9	1	0.0447	0.8714	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.9	1	0.9161	FALSE	344	826	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	RPH3AL--FAM101B	23	1	RPH3AL	1058	chr17:235988:-	FAM101B	29953	chr17:295730:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.2569	0.0112	LOCAL_REARRANGEMENT:-:[53724],RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains),FAM101B->chr17:289769-295730:-,family_with_sequence_similarity_101_member_B	NCIH1385_LUNG	0.96	1	0.2681	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TN	15	31	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1676	0.3463	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1385_LUNG	1	1	0.5139	FALSE	369	2501	205	193	0	FALSE	ACH-000737
NCIH1385_LUNG	AHDC1--PSME3	19	10	AHDC1	2035	chr1:27929908:-	PSME3	20723	chr17:40986361:+	ONLY_REF_SPLICE	YES	10	300	0.74	0.09	0.2123	0.1117	AHDC1->AT-hook_DNA_binding_motif_containing_1,chr1:27860546-27930942:-,PSME3->chr17:40976402-40995774:+,proteasome_activator_subunit_3	NCIH1385_LUNG	0.09	0.74	0.324	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RP11-1319K7.1--OCLN	17	16	RP11-1319K7.1	11795	chr5:69396543:-	OCLN	23178	chr5:68830521:+	ONLY_REF_SPLICE	YES	35	6	0.49	0.85	0.1899	0.1787	GTEx_FI:{Blood=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Breast=[count:2=pct:1.8],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Spleen=[count:1=pct:0.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3]},RP11-1319K7.1->chr5:69390202-69424261:-,OCLN->chr5:68788119-68853931:+,occludin	NCIH1385_LUNG	0.49	0.85	0.3686	TRUE	5	2	0	4	0	FALSE	ACH-000737
NCIH1385_LUNG	SH3BP2--FAM193A	19	8	SH3BP2	13588	chr4:2824764:+	FAM193A	58213	chr4:2733502:+	ONLY_REF_SPLICE	YES	19	31	0.59	0.47	0.2123	0.0894	LOCAL_REARRANGEMENT:+:[60458],SH3BP2->Oncogene{Bushman},SH3_domain_binding_protein_2,chr4:2794750-2842825:+,FAM193A->chr4:2626988-2734292:+,family_with_sequence_similarity_193_member_A	NCIH1385_LUNG	0.47	0.59	0.3017	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	13	29	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	331	0	0.11	1	0.1452	0.324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.11	1	0.4692	FALSE	344	827	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ATP6--MT-RNR2	19	2	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	11096	8595	0	0	0.2123	0.0223	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1385_LUNG	0	0	0.2346	FALSE	63	17	1	58	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	6	46	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	546	0	0.09	1	0.067	0.5139	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.09	1	0.5809	FALSE	344	827	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	10	29	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6808	0	0.01	1	0.1117	0.324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.01	1	0.4357	FALSE	344	827	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	4	53	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	2	1	0.97	0.98	0.0447	0.5921	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.97	0.98	0.6368	FALSE	344	821	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	RP11-123O10.4--GRIP1	15	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.1676	0.1005	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1385_LUNG	0.96	1	0.2681	FALSE	416	2512	207	587	0	FALSE	ACH-000737
NCIH1385_LUNG	ANKHD1--CTB-131B5.5	16	4	ANKHD1	1460	chr5:139781858:+	CTB-131B5.5	47936	chr5:139544235:+	ONLY_REF_SPLICE	YES	40	2	0.33	0.91	0.1787	0.0447	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,CTB-131B5.5->chr5:139536904-139552636:+	NCIH1385_LUNG	0.33	0.91	0.2234	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ND6--MT-TE	9	32	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.89	1	0.1005	0.3575	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1385_LUNG	0.89	1	0.458	FALSE	499	1288	110	792	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TC	17	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1899	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1385_LUNG	1	1	0.1899	FALSE	462	80	0	856	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	16	2	MT-ND4	2053	chrM:11812:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11494	60	0	0.23	0.1787	0.0223	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	0.23	0.201	FALSE	231	215	16	283	0	FALSE	ACH-000737
NCIH1385_LUNG	GSE1--SLC7A5	16	0	GSE1	2365	chr16:85647004:+	SLC7A5	30231	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1787	0	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	NCIH1385_LUNG	1	1	0.1787	TRUE	0	0	0	3	0	TRUE	ACH-000737
NCIH1385_LUNG	RAB11B--ANGPTL4	14	7	RAB11B	1476	chr19:8455340:+	ANGPTL4	9791	chr19:8428658:+	ONLY_REF_SPLICE	YES	16	0	0.57	1	0.1564	0.0782	LOCAL_REARRANGEMENT:+:[15608],RAB11B->RAB11B,_member_RAS_oncogene_family,chr19:8454865-8469318:+,ANGPTL4->angiopoietin_like_4,chr19:8428173-8439257:+	NCIH1385_LUNG	0.57	1	0.2346	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CRYL1--TPTE2	13	8	CRYL1	3312	chr13:21086582:-	TPTE2	23617	chr13:20039704:-	ONLY_REF_SPLICE	YES	30	2	0.41	0.91	0.1452	0.0894	CRYL1->chr13:20977806-21099996:-,crystallin_lambda_1,TPTE2->chr13:19997017-20110903:-,transmembrane_phosphoinositide_3-phosphatase_and_tensin_homolog_2	NCIH1385_LUNG	0.41	0.91	0.2346	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	8	28	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	26	0	0.58	1	0.0894	0.3128	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.58	1	0.4022	FALSE	344	826	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-RNR2	13	6	MT-ND4	2320	chrM:12079:+	MT-RNR2	5386	chrM:1678:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1452	0.067	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1385_LUNG	1	1	0.2122	FALSE	13	18	3	21	0	FALSE	ACH-000737
NCIH1385_LUNG	VGF--MT-ND4L	13	5	VGF	1176	chr7:100808699:-	MT-ND4L	7087	chrM:10471:+	INCL_NON_REF_SPLICE	YES	4362	0	0	1	0.1452	0.0559	VGF->Oncogene{Bushman},VGF_nerve_growth_factor_inducible,chr7:100805790-100808874:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0	1	0.2011	FALSE	0	0	0	4	0	FALSE	ACH-000737
NCIH1385_LUNG	RP11-634B7.4--TRIM58	12	8	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	14	1	0.59	0.1341	0.0894	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	NCIH1385_LUNG	0.59	1	0.2235	TRUE	158	633	76	73	0	FALSE	ACH-000737
NCIH1385_LUNG	SH3BP2--FAM193A	11	11	SH3BP2	15708	chr4:2826923:+	FAM193A	58213	chr4:2733502:+	ONLY_REF_SPLICE	YES	17	31	0.56	0.42	0.1229	0.1229	LOCAL_REARRANGEMENT:+:[60458],SH3BP2->Oncogene{Bushman},SH3_domain_binding_protein_2,chr4:2794750-2842825:+,FAM193A->chr4:2626988-2734292:+,family_with_sequence_similarity_193_member_A	NCIH1385_LUNG	0.42	0.56	0.2458	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CRYL1--TPTE2	10	13	CRYL1	3312	chr13:21086582:-	TPTE2	21335	chr13:20048215:-	ONLY_REF_SPLICE	YES	30	1	0.43	0.96	0.1117	0.1452	CRYL1->chr13:20977806-21099996:-,crystallin_lambda_1,TPTE2->chr13:19997017-20110903:-,transmembrane_phosphoinositide_3-phosphatase_and_tensin_homolog_2	NCIH1385_LUNG	0.43	0.96	0.2569	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	6	29	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	624	0	0.05	1	0.067	0.324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.05	1	0.391	FALSE	344	827	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	PCDH15--RP11-168O22.1	13	1	PCDH15	1318	chr10:57387385:-	RP11-168O22.1	68273	chr10:57335471:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1452	0.0112	GTEx_FI:{Adrenal_Gland=[count:35=pct:41.2],Pituitary=[count:2=pct:3.8],Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3]},PCDH15->chr10:55562531-57387702:-,protocadherin-related_15,RP11-168O22.1->chr10:57007515-57356993:-	NCIH1385_LUNG	0.88	1	0.1564	TRUE	32	58	0	7	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND6--MT-TE	8	19	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0894	0.2123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1385_LUNG	1	1	0.3017	FALSE	499	1288	110	792	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TC	11	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1229	0.0447	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1385_LUNG	1	1	0.1676	FALSE	462	80	0	856	0	FALSE	ACH-000737
NCIH1385_LUNG	TIMM23B--AGAP6	11	4	TIMM23B	6950	chr10:51387763:+	AGAP6	10946	chr10:51749068:+	ONLY_REF_SPLICE	YES	0	8	1	0.65	0.1229	0.0447	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,AGAP6->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_6,chr10:51748078-51770259:+	NCIH1385_LUNG	0.65	1	0.1676	TRUE	2	1	1	8	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND5--MT-ATP8	4	31	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0.3463	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	1	1	0.391	FALSE	43	37	8	105	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ATP6--MT-CO1	11	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11471	14822	0	0	0.1229	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1385_LUNG	0	0	0.1341	FALSE	183	104	9	328	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	3	33	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	9	0	0.8	1	0.0335	0.3687	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.8	1	0.4022	FALSE	344	826	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND6--MT-TE	3	32	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.0335	0.3575	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1385_LUNG	0.88	1	0.391	FALSE	499	1288	110	792	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TN	11	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1229	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1385_LUNG	1	1	0.1229	FALSE	369	2501	205	193	0	FALSE	ACH-000737
NCIH1385_LUNG	B3GNT5--KLHL24	10	3	B3GNT5	1229	chr3:182971260:+	KLHL24	19730	chr3:183361268:+	ONLY_REF_SPLICE	YES	107	58	0.11	0.18	0.1117	0.0335	GTEx_FI:{Blood=[count:2=pct:1.1]},B3GNT5->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_5,chr3:182971032-183016292:+,KLHL24->chr3:183353356-183402265:+,kelch_like_family_member_24	NCIH1385_LUNG	0.11	0.18	0.1452	TRUE	2	3	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND5--MT-ATP8	3	30	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.0335	0.3352	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0.89	1	0.3687	FALSE	43	37	8	105	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND5--MT-ATP8	8	10	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	5	544	0.78	0.03	0.0894	0.1117	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0.03	0.78	0.2011	FALSE	43	37	8	105	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND6--MT-TE	4	26	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0447	0.2905	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1385_LUNG	0.91	1	0.3352	FALSE	499	1288	110	792	0	FALSE	ACH-000737
NCIH1385_LUNG	WDR35--MTA3	9	6	WDR35	25562	chr2:20132044:-	MTA3	51414	chr2:42922905:+	ONLY_REF_SPLICE	YES	19	77	0.44	0.16	0.1005	0.067	WDR35->WD_repeat_domain_35,chr2:20110021-20189892:-,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	NCIH1385_LUNG	0.16	0.44	0.1675	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ND6--MT-TE	4	25	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0.2793	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1385_LUNG	1	1	0.324	FALSE	499	1288	110	792	0	FALSE	ACH-000737
NCIH1385_LUNG	RPS6KB1--VMP1	10	1	RPS6KB1	7326	chr17:57992064:+	VMP1	29276	chr17:57812699:+	ONLY_REF_SPLICE	YES	37	240	0.23	0.04	0.1117	0.0112	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH1385_LUNG	0.04	0.23	0.1229	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	10	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1117	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	1	1	0.1117	FALSE	230	198	14	283	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND5--MT-ATP8	5	20	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	4377	0	0.01	1	0.0559	0.2234	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0.01	1	0.2793	FALSE	43	37	8	105	0	FALSE	ACH-000737
NCIH1385_LUNG	USP34--CEACAM16	10	0	USP34	1120	chr2:61697785:-	CEACAM16	80583	chr19:45208860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1117	0	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CEACAM16->carcinoembryonic_antigen_related_cell_adhesion_molecule_16,chr19:45202421-45213986:+	NCIH1385_LUNG	1	1	0.1117	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RP4-565E6.1--HYDIN	8	6	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	11	1	0.56	0.0894	0.067	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1385_LUNG	0.56	1	0.1564	TRUE	84	87	4	41	0	FALSE	ACH-000737
NCIH1385_LUNG	CRYL1--TPTE2	8	5	CRYL1	3312	chr13:21086582:-	TPTE2	23863	chr13:20039458:-	ONLY_REF_SPLICE	YES	30	3	0.3	0.81	0.0894	0.0559	CRYL1->chr13:20977806-21099996:-,crystallin_lambda_1,TPTE2->chr13:19997017-20110903:-,transmembrane_phosphoinositide_3-phosphatase_and_tensin_homolog_2	NCIH1385_LUNG	0.3	0.81	0.1453	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ND5--MT-ATP8	3	25	MT-ND5	2313	chrM:13649:+	MT-ATP8	5814	chrM:8367:+	INCL_NON_REF_SPLICE	YES	4886	0	0.01	1	0.0335	0.2793	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0.01	1	0.3128	FALSE	43	37	8	105	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND3--MT-ATP8	9	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1005	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	1	1	0.1005	FALSE	351	233	23	137	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TC	8	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0894	0.0447	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1385_LUNG	1	1	0.1341	FALSE	462	80	0	856	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TN	9	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1005	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1385_LUNG	1	1	0.1005	FALSE	369	2501	205	193	0	FALSE	ACH-000737
NCIH1385_LUNG	RP11-168O22.1--PCDH15	9	0	RP11-168O22.1	2183	chr10:57335410:-	PCDH15	9774	chr10:56926411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1005	0	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	NCIH1385_LUNG	1	1	0.1005	TRUE	18	36	1	9	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	6	11	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	20	0	0.46	1	0.067	0.1229	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	0.46	1	0.1899	FALSE	344	826	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ATP6--MT-RNR2	8	2	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	10675	8440	0	0	0.0894	0.0223	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1385_LUNG	0	0	0.1117	FALSE	63	17	1	58	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND5--MT-ATP8	5	13	MT-ND5	2112	chrM:13448:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	6881	0	0	1	0.0559	0.1452	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	1	0.2011	FALSE	43	37	8	105	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND6--MT-TE	3	21	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0.2346	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1385_LUNG	1	1	0.2681	FALSE	499	1288	110	792	0	FALSE	ACH-000737
NCIH1385_LUNG	ORAI1--GIT2	8	1	ORAI1	1502	chr12:122064956:+	GIT2	21866	chr12:110391039:-	ONLY_REF_SPLICE	YES	7	28	0.56	0.24	0.0894	0.0112	ORAI1->ORAI_calcium_release-activated_calcium_modulator_1,chr12:122064455-122080583:+,GIT2->GIT_ArfGAP_2,chr12:110367607-110434194:-	NCIH1385_LUNG	0.24	0.56	0.1006	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	7	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0782	0.0447	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	1	1	0.1229	FALSE	344	821	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TN	8	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0894	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1385_LUNG	1	1	0.0894	FALSE	369	2501	205	193	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TN	8	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0894	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1385_LUNG	1	1	0.0894	FALSE	369	2501	205	193	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TY	8	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0894	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1385_LUNG	1	1	0.0894	FALSE	13	214	14	42	0	FALSE	ACH-000737
NCIH1385_LUNG	CASC9--RP11-300E4.2	7	3	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	20	0	0.33	1	0.0782	0.0335	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH1385_LUNG	0.33	1	0.1117	TRUE	0	12	0	10	12	TRUE	ACH-000737
NCIH1385_LUNG	MT-ND5--MT-ATP8	4	15	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	5981	0	0	1	0.0447	0.1676	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	1	0.2123	FALSE	43	37	8	105	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND6--MT-TE	4	15	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0.1676	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1385_LUNG	1	1	0.2123	FALSE	499	1288	110	792	0	FALSE	ACH-000737
NCIH1385_LUNG	C15orf57--CBX3	7	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	20	15	0.31	0.38	0.0782	0.0223	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1385_LUNG	0.31	0.38	0.1005	TRUE	267	562	48	632	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	7	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13641	0	0	1	0.0782	0.0223	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	1	0.1005	FALSE	231	217	16	283	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND6--MT-TE	5	9	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0559	0.1005	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1385_LUNG	1	1	0.1564	FALSE	499	1288	110	792	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ATP6--MT-CO1	7	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0782	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1385_LUNG	1	1	0.0782	FALSE	183	104	9	328	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND5--MT-ATP8	3	16	MT-ND5	2167	chrM:13503:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	6034	0	0	1	0.0335	0.1787	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	1	0.2122	FALSE	43	37	8	105	0	FALSE	ACH-000737
NCIH1385_LUNG	RP11-444D3.1--SOX5	7	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0782	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1385_LUNG	1	1	0.0782	TRUE	477	1352	189	275	0	FALSE	ACH-000737
NCIH1385_LUNG	YIPF6--BAZ1B	7	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0782	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	NCIH1385_LUNG	1	1	0.0782	TRUE	1	23	1	24	8	FALSE	ACH-000737
NCIH1385_LUNG	BSG--RNF126	6	3	BSG	2405	chr19:572701:+	RNF126	16079	chr19:652884:-	ONLY_REF_SPLICE	YES	474	38	0.02	0.19	0.067	0.0335	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:+:-:[64033],BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,RNF126->chr19:647526-663277:-,ring_finger_protein_126	NCIH1385_LUNG	0.02	0.19	0.1005	TRUE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	RP11-108K3.1--GLDN	5	7	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	2	2	0.86	0.86	0.0559	0.0782	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH1385_LUNG	0.86	0.86	0.1341	FALSE	0	19	0	46	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	6	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	12590	7	0	0.53	0.067	0.0223	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	0.53	0.0893	FALSE	231	217	16	283	0	FALSE	ACH-000737
NCIH1385_LUNG	ACAP2--TTBK1	5	4	ACAP2	1284	chr3:195163524:-	TTBK1	43509	chr6:43220477:+	ONLY_REF_SPLICE	YES	19	0	0.32	1	0.0559	0.0447	ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-,TTBK1->chr6:43211418-43255997:+,tau_tubulin_kinase_1	NCIH1385_LUNG	0.32	1	0.1006	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	ACAP2--TTBK1	5	4	ACAP2	1284	chr3:195163524:-	TTBK1	41230	chr6:43214345:+	ONLY_REF_SPLICE	YES	19	0	0.32	1	0.0559	0.0447	ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-,TTBK1->chr6:43211418-43255997:+,tau_tubulin_kinase_1	NCIH1385_LUNG	0.32	1	0.1006	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ATP6--MT-CO1	6	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1385_LUNG	1	1	0.067	FALSE	183	104	9	328	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND6--MT-TE	3	12	MT-ND6	1107	chrM:14567:-	MT-TE	4576	chrM:14692:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0.1341	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1385_LUNG	1	1	0.1676	FALSE	499	1288	110	792	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TN	6	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1385_LUNG	1	1	0.067	FALSE	369	2501	205	193	0	FALSE	ACH-000737
NCIH1385_LUNG	RP11-168O22.1--PCDH15	6	0	RP11-168O22.1	3305	chr10:57125852:-	PCDH15	9774	chr10:56926411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.067	0	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	NCIH1385_LUNG	1	1	0.067	TRUE	14	7	0	7	0	FALSE	ACH-000737
NCIH1385_LUNG	AHDC1--PSME3	2	15	AHDC1	2035	chr1:27929908:-	PSME3	16914	chr17:40977775:+	ONLY_REF_SPLICE	YES	10	0	0.63	1	0.0223	0.1676	AHDC1->AT-hook_DNA_binding_motif_containing_1,chr1:27860546-27930942:-,PSME3->chr17:40976402-40995774:+,proteasome_activator_subunit_3	NCIH1385_LUNG	0.63	1	0.1899	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CBX1--SKAP1	5	3	CBX1	1254	chr17:46178630:-	SKAP1	19557	chr17:46266862:-	ONLY_REF_SPLICE	YES	629	3	0.01	0.73	0.0559	0.0335	LOCAL_REARRANGEMENT:-:[31919],CBX1->chr17:46147414-46178883:-,chromobox_1,SKAP1->chr17:46210802-46507637:-,src_kinase_associated_phosphoprotein_1	NCIH1385_LUNG	0.01	0.73	0.0894	FALSE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	5	3	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	12317	0	0	1	0.0559	0.0335	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	1	0.0894	FALSE	231	217	16	283	0	FALSE	ACH-000737
NCIH1385_LUNG	RAB11B--ANGPTL4	4	7	RAB11B	1476	chr19:8455340:+	ANGPTL4	9238	chr19:8428105:+	INCL_NON_REF_SPLICE	YES	16	0	0.41	1	0.0447	0.0782	LOCAL_REARRANGEMENT:+:[15608],RAB11B->RAB11B,_member_RAS_oncogene_family,chr19:8454865-8469318:+,ANGPTL4->angiopoietin_like_4,chr19:8428173-8439257:+	NCIH1385_LUNG	0.41	1	0.1229	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RP4-565E6.1--HYDIN	4	7	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29409	chr16:71196502:-	INCL_NON_REF_SPLICE	YES	0	4	1	0.73	0.0447	0.0782	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1385_LUNG	0.73	1	0.1229	TRUE	456	1387	91	133	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ATP6--MT-RNR2	5	2	MT-ATP6	1295	chrM:8821:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	15027	8607	0	0	0.0559	0.0223	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1385_LUNG	0	0	0.0782	FALSE	63	17	1	58	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	13952	4	0	0.64	0.0559	0.0223	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	0.64	0.0782	FALSE	231	217	16	283	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12024	60	0	0.1	0.0559	0.0223	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	0.1	0.0782	FALSE	231	217	16	283	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12202	60	0	0.1	0.0559	0.0223	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	0.1	0.0782	FALSE	231	217	16	283	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND5--MT-ATP8	3	10	MT-ND5	2641	chrM:13977:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	2345	903	0.01	0.01	0.0335	0.1117	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0.01	0.01	0.1452	FALSE	43	37	8	105	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	4	5	MT-ND4	2239	chrM:11998:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	2907	0	0	1	0.0447	0.0559	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	1	0.1006	FALSE	216	209	16	281	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-RNR2	5	1	MT-ND4	1209	chrM:10968:+	MT-RNR2	5415	chrM:1707:+	INCL_NON_REF_SPLICE	NO	10579	0	0	1	0.0559	0.0112	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1385_LUNG	0	1	0.0671	FALSE	13	19	3	21	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-RNR2	5	1	MT-ND4	1212	chrM:10971:+	MT-RNR2	5959	chrM:2251:+	INCL_NON_REF_SPLICE	YES	10561	8194	0	0	0.0559	0.0112	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1385_LUNG	0	0	0.0671	FALSE	13	19	3	21	0	FALSE	ACH-000737
NCIH1385_LUNG	POLE--ANKLE2	5	1	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	19	145	0.24	0.04	0.0559	0.0112	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	NCIH1385_LUNG	0.04	0.24	0.0671	TRUE	0	0	0	11	0	TRUE	ACH-000737
NCIH1385_LUNG	WDR35--MTA3	4	5	WDR35	25462	chr2:20132144:-	MTA3	51414	chr2:42922905:+	ONLY_REF_SPLICE	YES	19	77	0.32	0.1	0.0447	0.0559	WDR35->WD_repeat_domain_35,chr2:20110021-20189892:-,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	NCIH1385_LUNG	0.1	0.32	0.1006	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	AC004980.7--SRRM3	5	0	AC004980.7	2605	chr7:76180839:+	SRRM3	12327	chr7:75864346:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0559	0	AC004980.7->chr7:76178677-76257299:+,SRRM3->chr7:75831216-75916605:+,serine/arginine_repetitive_matrix_3	NCIH1385_LUNG	1	1	0.0559	TRUE	0	2	0	2	2	TRUE	ACH-000737
NCIH1385_LUNG	ATP6AP1--TUBA1B	5	0	ATP6AP1	8142	chrX:153664119:+	TUBA1B	14419	chr12:49522647:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0559	0	ATP6AP1->ATPase_H+_transporting_accessory_protein_1,chrX:153656978-153664862:+,TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b	NCIH1385_LUNG	1	1	0.0559	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0559	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	1	1	0.0559	FALSE	344	821	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0559	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	1	1	0.0559	FALSE	344	821	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0559	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1385_LUNG	1	1	0.0559	FALSE	499	1288	110	792	0	FALSE	ACH-000737
NCIH1385_LUNG	TIMM23--RP11-592B15.3	2	12	TIMM23	5841	chr10:51610393:-	RP11-592B15.3	21430	chr10:51262177:-	ONLY_REF_SPLICE	YES	120	10	0.1	0.58	0.0223	0.1341	GTEx_FI:{Stomach=[count:2=pct:2.2],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Nerve=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Breast=[count:1=pct:0.9],Muscle=[count:1=pct:0.4]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-592B15.3->chr10:51253146-51371338:-	NCIH1385_LUNG	0.1	0.58	0.1564	TRUE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	TIMM23B--RP11-175I17.2	2	12	TIMM23B	5839	chr10:51384357:+	RP11-175I17.2	16572	chr10:46358562:-	ONLY_REF_SPLICE	YES	35	10	0.29	0.58	0.0223	0.1341	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Ovary=[count:1=pct:1.9]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,RP11-175I17.2->chr10:46349541-46411619:-	NCIH1385_LUNG	0.29	0.58	0.1564	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RAB11B--ANGPTL4	3	7	RAB11B	1476	chr19:8455340:+	ANGPTL4	9794	chr19:8428661:+	ONLY_REF_SPLICE	YES	16	0	0.38	1	0.0335	0.0782	LOCAL_REARRANGEMENT:+:[15608],RAB11B->RAB11B,_member_RAS_oncogene_family,chr19:8454865-8469318:+,ANGPTL4->angiopoietin_like_4,chr19:8428173-8439257:+	NCIH1385_LUNG	0.38	1	0.1117	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0.0335	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1385_LUNG	1	1	0.0782	FALSE	407	2205	196	549	0	FALSE	ACH-000737
NCIH1385_LUNG	CTDP1--PQLC1	4	2	CTDP1	14997	chr18:77478016:+	PQLC1	39770	chr18:77664183:-	ONLY_REF_SPLICE	YES	43	50	0.12	0.11	0.0447	0.0223	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.05%,GTEx_FI:{Blood=[count:13=pct:7.5],Skin=[count:11=pct:3.5],Whole_Blood=[count:3=pct:2.3],Lung=[count:2=pct:1.2],Liver=[count:1=pct:0.8]},GTEx_v2:{count=44;pct=0.51%;dist=Whole_Blood=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Skin_-_Sun_Exposed_(Lower_leg)=9,Lung=2,Kidney_-_Cortex=2,Breast_-_Mammary_Tissue=1,Liver=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},CTDP1->CTD_phosphatase_subunit_1,chr18:77439801-77514510:+,PQLC1->PQ_loop_repeat_containing_1,chr18:77662420-77711664:-	NCIH1385_LUNG	0.11	0.12	0.067	TRUE	11	1	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND5--MT-ATP8	4	2	MT-ND5	1590	chrM:12926:+	MT-ATP8	5921	chrM:8474:+	INCL_NON_REF_SPLICE	YES	4151	87	0	0.06	0.0447	0.0223	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	0.06	0.067	FALSE	42	36	7	104	0	FALSE	ACH-000737
NCIH1385_LUNG	RALGAPA1--SLC25A21	3	6	RALGAPA1	17045	chr14:36194230:-	SLC25A21	62935	chr14:37344209:-	ONLY_REF_SPLICE	YES	10	1	0.47	0.9	0.0335	0.067	RALGAPA1->Ral_GTPase_activating_protein_catalytic_alpha_subunit_1,chr14:36007558-36278510:-,SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21	NCIH1385_LUNG	0.47	0.9	0.1005	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	TTC31--MATN3	4	2	TTC31	3973	chr2:74718491:+	MATN3	11782	chr2:20206071:-	INCL_NON_REF_SPLICE	YES	17	0	0.26	1	0.0447	0.0223	TTC31->chr2:74710200-74722013:+,tetratricopeptide_repeat_domain_31,MATN3->chr2:20191872-20212455:-,matrilin_3	NCIH1385_LUNG	0.26	1	0.067	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	DOK6--CCDC102B	4	1	DOK6	1256	chr18:67068546:+	CCDC102B	42253	chr18:66721267:+	ONLY_REF_SPLICE	YES	12	1	0.29	0.83	0.0447	0.0112	{Klijn_CCL:Lung=1},DOK6->chr18:67068291-67516323:+,docking_protein_6,CCDC102B->chr18:66382446-66722426:+,coiled-coil_domain_containing_102B	NCIH1385_LUNG	0.29	0.83	0.0559	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ATP6--MT-CO1	3	5	MT-ATP6	1543	chrM:9069:+	MT-CO1	5325	chrM:6547:+	INCL_NON_REF_SPLICE	NO	3872	14923	0	0	0.0335	0.0559	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1385_LUNG	0	0	0.0894	FALSE	183	104	9	328	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	9765	8869	0	0	0.0447	0.0112	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1385_LUNG	0	0	0.0559	FALSE	63	17	1	58	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND5--MT-ATP8	3	5	MT-ND5	2099	chrM:13435:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6744	60	0	0.12	0.0335	0.0559	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	0.12	0.0894	FALSE	43	37	8	105	0	FALSE	ACH-000737
NCIH1385_LUNG	NDUFA4--PHF14	4	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	931	24	0.01	0.17	0.0447	0.0112	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1385_LUNG	0.01	0.17	0.0559	FALSE	19	32	3	60	0	FALSE	ACH-000737
NCIH1385_LUNG	HOXB3--HOXB9	4	0	HOXB3	2581	chr17:46667487:-	HOXB9	22377	chr17:46700497:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[16244],HOXB3->chr17:46626232-46682274:-,homeobox_B3,HOXB9->chr17:46698518-46703839:-,homeobox_B9	NCIH1385_LUNG	1	1	0.0447	TRUE	0	0	0	2	0	TRUE	ACH-000737
NCIH1385_LUNG	MICALL2--MAFK	4	0	MICALL2	1319	chr7:1498820:-	MAFK	23354	chr7:1578785:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[71212],MICALL2->MICAL_like_2,chr7:1468101-1499138:-,MAFK->Oncogene{Bushman},chr7:1570350-1582679:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_K	NCIH1385_LUNG	1	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1385_LUNG	1	1	0.0447	FALSE	183	104	9	328	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1385_LUNG	1	1	0.0447	FALSE	63	17	1	58	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1110	chrM:8636:+	MT-RNR2	5247	chrM:2236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1385_LUNG	1	1	0.0447	FALSE	63	17	1	58	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1121	chrM:8647:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1385_LUNG	1	1	0.0447	FALSE	63	17	1	58	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND3--MT-ATP8	4	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	1	1	0.0447	FALSE	351	233	23	137	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND3--MT-ATP8	4	0	MT-ND3	1236	chrM:10294:+	MT-ATP8	4437	chrM:8456:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	1	1	0.0447	FALSE	351	233	23	137	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	1	1	0.0447	FALSE	230	193	14	283	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1210	0	0.01	1	0.0335	0.0447	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0.01	1	0.0782	FALSE	216	209	16	281	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1003	chrM:10762:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	1	1	0.0447	FALSE	230	189	14	283	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	1	1	0.0447	FALSE	230	198	14	283	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	1	1	0.0447	FALSE	231	205	14	283	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1031	chrM:14643:-	MT-TE	4590	chrM:14678:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1385_LUNG	1	1	0.0447	FALSE	499	1288	110	792	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1385_LUNG	1	1	0.0447	FALSE	499	1288	110	792	0	FALSE	ACH-000737
NCIH1385_LUNG	PCAT1--RP11-382A18.2	4	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	NCIH1385_LUNG	1	1	0.0447	TRUE	4	84	1	46	0	FALSE	ACH-000737
NCIH1385_LUNG	RALGAPA1--SLC25A21	3	4	RALGAPA1	15894	chr14:36197568:-	SLC25A21	62935	chr14:37344209:-	ONLY_REF_SPLICE	YES	19	1	0.27	0.88	0.0335	0.0447	RALGAPA1->Ral_GTPase_activating_protein_catalytic_alpha_subunit_1,chr14:36007558-36278510:-,SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21	NCIH1385_LUNG	0.27	0.88	0.0782	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CRYL1--TPTE2	1	11	CRYL1	3312	chr13:21086582:-	TPTE2	22497	chr13:20041484:-	ONLY_REF_SPLICE	YES	30	2	0.29	0.86	0.0112	0.1229	CRYL1->chr13:20977806-21099996:-,crystallin_lambda_1,TPTE2->chr13:19997017-20110903:-,transmembrane_phosphoinositide_3-phosphatase_and_tensin_homolog_2	NCIH1385_LUNG	0.29	0.86	0.1341	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1564	chrM:9090:+	MT-RNR2	5269	chrM:2258:+	INCL_NON_REF_SPLICE	YES	2115	8593	0	0	0.0335	0.0335	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1385_LUNG	0	0	0.067	FALSE	63	17	1	58	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	12597	0	0	1	0.0335	0.0335	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	1	0.067	FALSE	231	217	16	283	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	13339	0	0	1	0.0335	0.0335	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	1	0.067	FALSE	231	217	16	283	0	FALSE	ACH-000737
NCIH1385_LUNG	MUM1--MISP	3	3	MUM1	5601	chr19:1358463:+	MISP	28540	chr19:759909:+	ONLY_REF_SPLICE	YES	28	54	0.18	0.1	0.0335	0.0335	MUM1->chr19:1285890-1378430:+,melanoma_associated_antigen_(mutated)_1,MISP->chr19:751126-764319:+,mitotic_spindle_positioning	NCIH1385_LUNG	0.1	0.18	0.067	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RPH3AL--FAM101B	3	3	RPH3AL	2563	chr17:202384:-	FAM101B	29953	chr17:295730:-	ONLY_REF_SPLICE	YES	36	0	0.14	1	0.0335	0.0335	LOCAL_REARRANGEMENT:-:[53724],RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains),FAM101B->chr17:289769-295730:-,family_with_sequence_similarity_101_member_B	NCIH1385_LUNG	0.14	1	0.067	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	13542	0	0	1	0.0335	0.0223	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	1	0.0558	FALSE	231	217	16	283	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	NO	12565	972	0	0.01	0.0335	0.0223	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	0.01	0.0558	FALSE	231	217	16	283	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	15188	792	0	0.01	0.0335	0.0223	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	0.01	0.0558	FALSE	231	217	16	283	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-RNR2	3	2	MT-ND4	1908	chrM:11667:+	MT-RNR2	5943	chrM:2235:+	INCL_NON_REF_SPLICE	NO	12815	8785	0	0	0.0335	0.0223	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1385_LUNG	0	0	0.0558	FALSE	13	19	3	21	0	FALSE	ACH-000737
NCIH1385_LUNG	RP11-161I6.2--DYRK3	3	2	RP11-161I6.2	4277	chr18:2126201:-	DYRK3	21243	chr1:206856252:+	ONLY_REF_SPLICE	YES	15	0	0.25	1	0.0335	0.0223	RP11-161I6.2->chr18:1883525-2240847:-,DYRK3->chr1:206808881-206857764:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_3	NCIH1385_LUNG	0.25	1	0.0558	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	ZC3H3--EEF1D	2	6	ZC3H3	4593	chr8:144618427:-	EEF1D	28609	chr8:144669022:-	ONLY_REF_SPLICE	NO	21	94	0.28	0.08	0.0223	0.067	GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[38244],ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	NCIH1385_LUNG	0.08	0.28	0.0893	TRUE	3	0	0	4	0	FALSE	ACH-000737
NCIH1385_LUNG	AHDC1--PSME3	1	9	AHDC1	2035	chr1:27929908:-	PSME3	20894	chr17:40986532:+	ONLY_REF_SPLICE	YES	10	293	0.5	0.03	0.0112	0.1005	AHDC1->AT-hook_DNA_binding_motif_containing_1,chr1:27860546-27930942:-,PSME3->chr17:40976402-40995774:+,proteasome_activator_subunit_3	NCIH1385_LUNG	0.03	0.5	0.1117	TRUE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	CCND1--FGF19	3	1	CCND1	1425	chr11:69456279:+	FGF19	14607	chr11:69514344:-	ONLY_REF_SPLICE	YES	87	3190	0.04	0	0.0335	0.0112	LOCAL_INVERSION:+:-:[43758],CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,FGF19->ArcherDX_panel,FoundationOne_panel,chr11:69513000-69519410:-,fibroblast_growth_factor_19	NCIH1385_LUNG	0	0.04	0.0447	FALSE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	GIT2--ORAI1	2	5	GIT2	12174	chr12:110399083:-	ORAI1	35814	chr12:122078947:+	ONLY_REF_SPLICE	YES	29	8	0.19	0.47	0.0223	0.0559	GIT2->GIT_ArfGAP_2,chr12:110367607-110434194:-,ORAI1->ORAI_calcium_release-activated_calcium_modulator_1,chr12:122064455-122080583:+	NCIH1385_LUNG	0.19	0.47	0.0782	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-RNR2	3	1	MT-ND4	1303	chrM:11062:+	MT-RNR2	5933	chrM:2225:+	INCL_NON_REF_SPLICE	YES	13279	8607	0	0	0.0335	0.0112	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1385_LUNG	0	0	0.0447	FALSE	13	19	3	21	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-RNR2	3	1	MT-ND4	1222	chrM:10981:+	MT-RNR2	5968	chrM:2260:+	INCL_NON_REF_SPLICE	YES	10703	8596	0	0	0.0335	0.0112	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1385_LUNG	0	0	0.0447	FALSE	13	19	3	21	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND5--MT-ATP8	3	1	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7064	60	0	0.06	0.0335	0.0112	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	0	0.06	0.0447	FALSE	41	30	6	102	0	FALSE	ACH-000737
NCIH1385_LUNG	RP11-123O10.4--GRIP1	1	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	NO	0	1	1	0.91	0.0112	0.1005	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1385_LUNG	0.91	1	0.1117	FALSE	9	21	5	22	0	FALSE	ACH-000737
NCIH1385_LUNG	C7orf50--MAFK	3	0	C7orf50	3078	chr7:1166893:-	MAFK	19809	chr7:1578785:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAFK->Oncogene{Bushman},chr7:1570350-1582679:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_K	NCIH1385_LUNG	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	GSE1--SLC7A5	3	0	GSE1	2365	chr16:85647004:+	SLC7A5	29105	chr16:87885455:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	NCIH1385_LUNG	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	HOXB3--HOXB9	3	0	HOXB3	1433	chr17:46681842:-	HOXB9	22377	chr17:46700497:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[16244],HOXB3->chr17:46626232-46682274:-,homeobox_B3,HOXB9->chr17:46698518-46703839:-,homeobox_B9	NCIH1385_LUNG	1	1	0.0335	TRUE	0	0	0	3	0	TRUE	ACH-000737
NCIH1385_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1111	chrM:8637:+	MT-RNR2	5402	chrM:2391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1385_LUNG	1	1	0.0335	FALSE	63	17	1	58	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1172	chrM:8698:+	MT-RNR2	5313	chrM:2302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1385_LUNG	1	1	0.0335	FALSE	63	17	1	58	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1385_LUNG	1	1	0.0335	FALSE	231	204	14	283	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1019	chrM:10778:+	MT-ND4L	5617	chrM:10708:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	1	1	0.0335	FALSE	344	821	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1385_LUNG	1	1	0.0335	FALSE	344	821	44	306	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND4--MT-RNR2	3	0	MT-ND4	1386	chrM:11145:+	MT-RNR2	6128	chrM:2420:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1385_LUNG	1	1	0.0335	FALSE	13	19	3	21	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1014	chrM:14660:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1385_LUNG	1	1	0.0335	FALSE	499	1288	110	792	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1385_LUNG	1	1	0.0335	FALSE	499	1288	110	792	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TN	3	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1385_LUNG	1	1	0.0335	FALSE	369	2501	205	193	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TY	3	0	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1385_LUNG	1	1	0.0335	FALSE	13	214	14	42	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TY	3	0	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1385_LUNG	1	1	0.0335	FALSE	13	214	14	42	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TY	3	0	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1385_LUNG	1	1	0.0335	FALSE	13	214	14	42	0	FALSE	ACH-000737
NCIH1385_LUNG	MT-TA--MT-TY	3	0	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1385_LUNG	1	1	0.0335	FALSE	13	214	14	42	0	FALSE	ACH-000737
NCIH1385_LUNG	NCOR2--UBC	3	0	NCOR2	3484	chr12:125002686:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH1385_LUNG	1	1	0.0335	TRUE	7	26	3	12	0	FALSE	ACH-000737
NCIH1385_LUNG	POLE--PGAM5	3	0	POLE	1112	chr12:133263840:-	PGAM5	42986	chr12:133291444:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	LOCAL_INVERSION:-:+:[23454],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	NCIH1385_LUNG	1	1	0.0335	TRUE	0	0	0	2	0	TRUE	ACH-000737
NCIH1385_LUNG	RP11-1379J22.5--UBE2D2	3	0	RP11-1379J22.5	1720	chr5:179085482:+	UBE2D2	10384	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	RP11-1379J22.5->chr5:179084763-179091433:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	NCIH1385_LUNG	1	1	0.0335	TRUE	0	5	0	5	2	TRUE	ACH-000737
NCIH1385_LUNG	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0223	0.0447	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1385_LUNG	0.86	1	0.067	FALSE	467	2173	244	435	0	FALSE	ACH-000737
NCIH1385_LUNG	TPPP--IRX2	3	0	TPPP	1118	chr5:693393:-	IRX2	14481	chr5:2749901:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	GTEx_FI:{Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6]},GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},TPPP->chr5:660883-693510:-,tubulin_polymerization_promoting_protein,IRX2->chr5:2745959-2752969:-,iroquois_homeobox_2	NCIH1385_LUNG	1	1	0.0335	TRUE	1	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	TTC31--MATN3	3	0	TTC31	3793	chr2:74718311:+	MATN3	11782	chr2:20206071:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0335	0	TTC31->chr2:74710200-74722013:+,tetratricopeptide_repeat_domain_31,MATN3->chr2:20191872-20212455:-,matrilin_3	NCIH1385_LUNG	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CBX1--SKAP1	2	3	CBX1	1254	chr17:46178630:-	SKAP1	15210	chr17:46441176:-	ONLY_REF_SPLICE	YES	629	0	0.01	1	0.0223	0.0335	LOCAL_REARRANGEMENT:-:[31919],CBX1->chr17:46147414-46178883:-,chromobox_1,SKAP1->chr17:46210802-46507637:-,src_kinase_associated_phosphoprotein_1	NCIH1385_LUNG	0.01	1	0.0558	FALSE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0223	0.0335	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1385_LUNG	0.83	1	0.0558	FALSE	515	4851	409	746	0	FALSE	ACH-000737
NCIH1385_LUNG	SS18L1--TAF4	2	3	SS18L1	1124	chr20:60718945:+	TAF4	21561	chr20:60589763:-	ONLY_REF_SPLICE	YES	11	4	0.31	0.56	0.0223	0.0335	GTEx_FI:{Skin=[count:2=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Pancreas=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[77956],SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-	NCIH1385_LUNG	0.31	0.56	0.0558	TRUE	2	5	0	8	0	FALSE	ACH-000737
NCIH1385_LUNG	RP11-161I6.2--DYRK3	2	2	RP11-161I6.2	5370	chr18:2111645:-	DYRK3	21243	chr1:206856252:+	ONLY_REF_SPLICE	YES	15	0	0.21	1	0.0223	0.0223	RP11-161I6.2->chr18:1883525-2240847:-,DYRK3->chr1:206808881-206857764:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_3	NCIH1385_LUNG	0.21	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	ANKHD1--CTB-131B5.5	2	1	ANKHD1	1460	chr5:139781858:+	CTB-131B5.5	50651	chr5:139546950:+	ONLY_REF_SPLICE	YES	40	1	0.07	0.75	0.0223	0.0112	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,CTB-131B5.5->chr5:139536904-139552636:+	NCIH1385_LUNG	0.07	0.75	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CPSF6--FOXM1	2	1	CPSF6	11046	chr12:69656342:+	FOXM1	30127	chr12:2968829:-	ONLY_REF_SPLICE	YES	149	152	0.02	0.02	0.0223	0.0112	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,FOXM1->Oncogene{Bushman},chr12:2966847-2986206:-,forkhead_box_M1	NCIH1385_LUNG	0.02	0.02	0.0335	TRUE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	RP11-108K3.1--GLDN	2	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0.0112	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH1385_LUNG	1	1	0.0335	FALSE	1	20	0	46	0	FALSE	ACH-000737
NCIH1385_LUNG	TPPP--IRX2	2	1	TPPP	2433	chr5:677865:-	IRX2	14481	chr5:2749901:-	ONLY_REF_SPLICE	YES	13	7	0.19	0.3	0.0223	0.0112	GTEx_FI:{Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6]},GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},TPPP->chr5:660883-693510:-,tubulin_polymerization_promoting_protein,IRX2->chr5:2745959-2752969:-,iroquois_homeobox_2	NCIH1385_LUNG	0.19	0.3	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	UVSSA--CTBP1	2	1	UVSSA	7499	chr4:1349033:+	CTBP1	32260	chr4:1222131:-	ONLY_REF_SPLICE	YES	30	212	0.09	0.01	0.0223	0.0112	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH1385_LUNG	0.01	0.09	0.0335	FALSE	3	2	0	5	0	FALSE	ACH-000737
NCIH1385_LUNG	ATG4C--LRRC40	2	0	ATG4C	5588	chr1:63282479:+	LRRC40	27564	chr1:70625121:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	ATG4C->autophagy_related_4C_cysteine_peptidase,chr1:63249806-63331184:+,LRRC40->chr1:70610488-70671303:-,leucine_rich_repeat_containing_40	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CALCA--ULK3	2	0	CALCA	4479	chr11:14990372:-	ULK3	15549	chr15:75129776:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	CALCA->Oncogene{Bushman},calcitonin_related_polypeptide_alpha,chr11:14988214-14993900:-,ULK3->chr15:75128457-75135687:-,unc-51_like_kinase_3	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CAPN10--RNPEPL1	2	0	CAPN10	2469	chr2:241528891:+	RNPEPL1	24188	chr2:241513932:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LOCAL_REARRANGEMENT:+:[5344],CAPN10->calpain_10,chr2:241526133-241557122:+,RNPEPL1->arginyl_aminopeptidase_(aminopeptidase_B)-like_1,chr2:241505221-241520789:+	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CDH7--PMAIP1	2	0	CDH7	3305	chr18:63430288:+	PMAIP1	23266	chr18:57569879:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	CDH7->cadherin_7,chr18:63417488-63548638:+,PMAIP1->chr18:57567180-57571538:+,phorbol-12-myristate-13-acetate-induced_protein_1	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	DCTN6--KAT6A	2	0	DCTN6	2175	chr8:30021691:+	KAT6A	14480	chr8:41906820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6,KAT6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr8:41786997-41909508:-,lysine_acetyltransferase_6A	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	DTNA--RAB12	2	0	DTNA	1225	chr18:32073478:+	RAB12	54438	chr18:8624936:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha,RAB12->RAB12,_member_RAS_oncogene_family,chr18:8609443-8639379:+	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	DTNA--ZNF24	2	0	DTNA	1225	chr18:32073478:+	ZNF24	56869	chr18:32920697:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha,ZNF24->chr18:32912176-32925446:-,zinc_finger_protein_24	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	2	0	TRUE	ACH-000737
NCIH1385_LUNG	INPP4B--KCNN1	2	0	INPP4B	33644	chr4:143181645:-	KCNN1	65577	chr19:18084617:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,KCNN1->chr19:18062102-18110889:+,potassium_calcium-activated_channel_subfamily_N_member_1	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	JPH3--SLC7A5	2	0	JPH3	9150	chr16:87717872:+	SLC7A5	20389	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	JPH3->chr16:87635441-87731762:+,junctophilin_3,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	LINC01014--KCNMB2	2	0	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH1385_LUNG	1	1	0.0223	FALSE	11	60	26	37	0	FALSE	ACH-000737
NCIH1385_LUNG	MBOAT2--AC068542.1	2	0	MBOAT2	15820	chr2:9000743:-	AC068542.1	27260	chr2:115586449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	MBOAT2->chr2:8992820-9143942:-,membrane_bound_O-acyltransferase_domain_containing_2,AC068542.1->chr2:115586009-115591125:-	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	PCDH15--RP11-168O22.1	2	0	PCDH15	1318	chr10:57387385:-	RP11-168O22.1	70457	chr10:57007648:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_FI:{Adrenal_Gland=[count:35=pct:41.2],Pituitary=[count:2=pct:3.8],Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3]},PCDH15->chr10:55562531-57387702:-,protocadherin-related_15,RP11-168O22.1->chr10:57007515-57356993:-	NCIH1385_LUNG	1	1	0.0223	TRUE	24	53	0	5	0	FALSE	ACH-000737
NCIH1385_LUNG	PCNXL2--CEP70	2	0	PCNXL2	1388	chr1:233431072:-	CEP70	59802	chr3:138251412:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	PCNXL2->chr1:233119181-233431459:-,CEP70->centrosomal_protein_70,chr3:138213186-138313380:-	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RNF126--BSG	2	0	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	NCIH1385_LUNG	1	1	0.0223	TRUE	0	2	0	12	0	TRUE	ACH-000737
NCIH1385_LUNG	RP11-108K3.1--GLDN	1	4	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.0112	0.0447	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH1385_LUNG	0.71	1	0.0559	FALSE	0	30	1	55	0	FALSE	ACH-000737
NCIH1385_LUNG	RP11-1379J22.5--HSD17B14	2	0	RP11-1379J22.5	1720	chr5:179085482:+	HSD17B14	12002	chr19:49318398:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	RP11-1379J22.5->chr5:179084763-179091433:+,HSD17B14->chr19:49316274-49339935:-,hydroxysteroid_(17-beta)_dehydrogenase_14	NCIH1385_LUNG	1	1	0.0223	TRUE	0	1	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RP11-161I6.2--DYRK3	2	0	RP11-161I6.2	2055	chr18:2239793:-	DYRK3	21243	chr1:206856252:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	RP11-161I6.2->chr18:1883525-2240847:-,DYRK3->chr1:206808881-206857764:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_3	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1385_LUNG	1	1	0.0223	TRUE	160	277	29	98	0	FALSE	ACH-000737
NCIH1385_LUNG	SETD8--CDK2AP1	2	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	18	0	TRUE	ACH-000737
NCIH1385_LUNG	SLC7A2--MTMR7	2	0	SLC7A2	2196	chr8:17359811:+	MTMR7	26147	chr8:17230749:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LOCAL_INVERSION:+:-:[83560],SLC7A2->chr8:17354597-17428082:+,solute_carrier_family_7_member_2,MTMR7->chr8:17155539-17271037:-,myotubularin_related_protein_7	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	SMARCA2--VLDLR	2	0	SMARCA2	1063	chr9:2015404:+	VLDLR	49175	chr9:2635453:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	SMARCA2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_2,chr9:2015342-2193624:+,VLDLR->chr9:2621834-2660053:+,very_low_density_lipoprotein_receptor	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	SNAP47--DEGS1	2	0	SNAP47	1248	chr1:227916487:+	DEGS1	22353	chr1:224377279:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	SNAP47->chr1:227916240-227968927:+,synaptosome_associated_protein_47kDa,DEGS1->chr1:224363458-224381143:+,delta(4)-desaturase,_sphingolipid_1	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	TOMM40L--NDUFS2	2	0	TOMM40L	1134	chr1:161195926:+	NDUFS2	19348	chr1:161183439:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LOCAL_REARRANGEMENT:+:[11608],TOMM40L->chr1:161195793-161200408:+,translocase_of_outer_mitochondrial_membrane_40_like,NDUFS2->NADH:ubiquinone_oxidoreductase_core_subunit_S2,chr1:161166894-161184185:+	NCIH1385_LUNG	1	1	0.0223	TRUE	0	2	0	2	0	TRUE	ACH-000737
NCIH1385_LUNG	YWHAE--ABR	2	0	YWHAE	1332	chr17:1303341:-	ABR	45102	chr17:916404:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	YWHAE--ABR	2	0	YWHAE	1332	chr17:1303341:-	ABR	26806	chr17:1003975:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	NCIH1385_LUNG	1	1	0.0223	TRUE	0	0	0	4	0	TRUE	ACH-000737
NCIH1385_LUNG	ACAP2--TTBK1	1	3	ACAP2	1284	chr3:195163524:-	TTBK1	44338	chr6:43221306:+	ONLY_REF_SPLICE	YES	19	11	0.17	0.27	0.0112	0.0335	ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-,TTBK1->chr6:43211418-43255997:+,tau_tubulin_kinase_1	NCIH1385_LUNG	0.17	0.27	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	ACAP2--TTBK1	1	3	ACAP2	1284	chr3:195163524:-	TTBK1	44061	chr6:43221029:+	ONLY_REF_SPLICE	YES	19	7	0.17	0.36	0.0112	0.0335	ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-,TTBK1->chr6:43211418-43255997:+,tau_tubulin_kinase_1	NCIH1385_LUNG	0.17	0.36	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	CBX1--SKAP1	1	3	CBX1	1254	chr17:46178630:-	SKAP1	16236	chr17:46423368:-	ONLY_REF_SPLICE	YES	629	0	0.01	1	0.0112	0.0335	LOCAL_REARRANGEMENT:-:[31919],CBX1->chr17:46147414-46178883:-,chromobox_1,SKAP1->chr17:46210802-46507637:-,src_kinase_associated_phosphoprotein_1	NCIH1385_LUNG	0.01	1	0.0447	FALSE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	NCOR2--UBC	1	3	NCOR2	54957	chr12:124810737:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	99	68	0.04	0.06	0.0112	0.0335	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH1385_LUNG	0.04	0.06	0.0447	TRUE	3	0	1	1	0	FALSE	ACH-000737
NCIH1385_LUNG	TIMM23B--AGAP6	1	3	TIMM23B	6950	chr10:51387763:+	AGAP6	12015	chr10:51751436:+	ONLY_REF_SPLICE	YES	0	6	1	0.4	0.0112	0.0335	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,AGAP6->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_6,chr10:51748078-51770259:+	NCIH1385_LUNG	0.4	1	0.0447	TRUE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	ASPSCR1--CSNK1D	1	2	ASPSCR1	6589	chr17:79943483:+	CSNK1D	34406	chr17:80211120:-	ONLY_REF_SPLICE	YES	65	512	0.04	0.01	0.0112	0.0223	ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	NCIH1385_LUNG	0.01	0.04	0.0335	FALSE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	NOC4L--FBRSL1	1	2	NOC4L	3941	chr12:132631933:+	FBRSL1	13619	chr12:133083838:+	ONLY_REF_SPLICE	YES	34	3	0.08	0.5	0.0112	0.0223	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	NCIH1385_LUNG	0.08	0.5	0.0335	TRUE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	NOC4L--FBRSL1	1	2	NOC4L	2218	chr12:132630210:+	FBRSL1	13619	chr12:133083838:+	ONLY_REF_SPLICE	YES	32	3	0.09	0.5	0.0112	0.0223	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	NCIH1385_LUNG	0.09	0.5	0.0335	TRUE	2	1	0	3	0	FALSE	ACH-000737
NCIH1385_LUNG	RP11-1L12.3--SLC5A12	1	2	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	NO	4	0	0.43	1	0.0112	0.0223	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	NCIH1385_LUNG	0.43	1	0.0335	TRUE	3	101	0	60	0	FALSE	ACH-000737
NCIH1385_LUNG	TCF25--FUS	1	2	TCF25	18274	chr16:89972692:+	FUS	32777	chr16:31199646:+	ONLY_REF_SPLICE	NO	64	367	0.04	0.01	0.0112	0.0223	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},TCF25->chr16:89940000-89977792:+,transcription_factor_25,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH1385_LUNG	0.01	0.04	0.0335	FALSE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	TCF25--FUS	1	2	TCF25	9175	chr16:89958683:+	FUS	32777	chr16:31199646:+	ONLY_REF_SPLICE	YES	62	367	0.05	0.01	0.0112	0.0223	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},TCF25->chr16:89940000-89977792:+,transcription_factor_25,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH1385_LUNG	0.01	0.05	0.0335	FALSE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	TCF25--FUS	1	2	TCF25	14959	chr16:89967202:+	FUS	32777	chr16:31199646:+	ONLY_REF_SPLICE	YES	67	367	0.04	0.01	0.0112	0.0223	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},TCF25->chr16:89940000-89977792:+,transcription_factor_25,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH1385_LUNG	0.01	0.04	0.0335	FALSE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	UVSSA--CTBP1	1	2	UVSSA	11116	chr4:1369956:+	CTBP1	32260	chr4:1222131:-	ONLY_REF_SPLICE	NO	45	212	0.06	0.01	0.0112	0.0223	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH1385_LUNG	0.01	0.06	0.0335	FALSE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	UVSSA--CTBP1	1	2	UVSSA	8854	chr4:1360219:+	CTBP1	32260	chr4:1222131:-	ONLY_REF_SPLICE	YES	37	212	0.07	0.01	0.0112	0.0223	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH1385_LUNG	0.01	0.07	0.0335	FALSE	1	0	0	2	0	FALSE	ACH-000737
NCIH1385_LUNG	WDR35--MTA3	1	2	WDR35	24444	chr2:20133162:-	MTA3	51414	chr2:42922905:+	ONLY_REF_SPLICE	NO	22	77	0.12	0.04	0.0112	0.0223	WDR35->WD_repeat_domain_35,chr2:20110021-20189892:-,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	NCIH1385_LUNG	0.04	0.12	0.0335	TRUE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	AC084018.1--SETD1B	1	1	AC084018.1	3200	chr12:122239613:-	SETD1B	11893	chr12:122242630:+	ONLY_REF_SPLICE	YES	42	0	0.05	1	0.0112	0.0112	LOCAL_INVERSION:-:+:[274],AC084018.1->chr12:122233173-122241812:-,SETD1B->SET_domain_containing_1B,chr12:122242086-122270562:+	NCIH1385_LUNG	0.05	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	ARFRP1--DAZAP1	1	1	ARFRP1	2669	chr20:62337709:-	DAZAP1	17633	chr19:1417499:+	ONLY_REF_SPLICE	YES	24	87	0.08	0.02	0.0112	0.0112	ARFRP1->ADP_ribosylation_factor_related_protein_1,ArcherDX_panel,FoundationOne_panel,chr20:62329996-62339377:-,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	NCIH1385_LUNG	0.02	0.08	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	ASPSCR1--NPLOC4	1	1	ASPSCR1	6589	chr17:79943483:+	NPLOC4	44229	chr17:79539114:-	ONLY_REF_SPLICE	NO	65	334	0.03	0.01	0.0112	0.0112	ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+,NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-	NCIH1385_LUNG	0.01	0.03	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	B3GNT5--KLHL24	1	1	B3GNT5	1229	chr3:182971260:+	KLHL24	21418	chr3:183368084:+	ONLY_REF_SPLICE	YES	107	74	0.02	0.03	0.0112	0.0112	GTEx_FI:{Blood=[count:2=pct:1.1]},B3GNT5->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_5,chr3:182971032-183016292:+,KLHL24->chr3:183353356-183402265:+,kelch_like_family_member_24	NCIH1385_LUNG	0.02	0.03	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	DIP2C--CYHR1	1	1	DIP2C	1250	chr10:735434:-	CYHR1	59339	chr8:145678843:-	ONLY_REF_SPLICE	YES	23	49	0.08	0.04	0.0112	0.0112	DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	NCIH1385_LUNG	0.04	0.08	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	DOT1L--AC135048.13	1	1	DOT1L	8576	chr19:2194576:+	AC135048.13	38506	chr16:30964506:+	ONLY_REF_SPLICE	YES	17	0	0.11	1	0.0112	0.0112	DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+,AC135048.13->chr16:30959707-30967832:+	NCIH1385_LUNG	0.11	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	DTNA--SNN	1	1	DTNA	1225	chr18:32073478:+	SNN	54056	chr16:11769831:+	ONLY_REF_SPLICE	NO	174	3	0.01	0.4	0.0112	0.0112	DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha,SNN->chr16:11762270-11773015:+,stannin	NCIH1385_LUNG	0.01	0.4	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	GIPR--ANKLE2	1	1	GIPR	8807	chr19:46180366:+	ANKLE2	22976	chr12:133331719:-	ONLY_REF_SPLICE	YES	48	145	0.04	0.01	0.0112	0.0112	GIPR->chr19:46171502-46186982:+,gastric_inhibitory_polypeptide_receptor,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	NCIH1385_LUNG	0.01	0.04	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	MAD1L1--MAFK	1	1	MAD1L1	19401	chr7:2188787:-	MAFK	45880	chr7:1578785:+	ONLY_REF_SPLICE	YES	20	4	0.09	0.33	0.0112	0.0112	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,MAFK->Oncogene{Bushman},chr7:1570350-1582679:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_K	NCIH1385_LUNG	0.09	0.33	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	MAD1L1--MAFK	1	1	MAD1L1	26516	chr7:2108829:-	MAFK	45880	chr7:1578785:+	ONLY_REF_SPLICE	YES	15	4	0.12	0.33	0.0112	0.0112	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,MAFK->Oncogene{Bushman},chr7:1570350-1582679:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_K	NCIH1385_LUNG	0.12	0.33	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	NCOA1--TIA1	1	1	NCOA1	23832	chr2:24952684:+	TIA1	45392	chr2:70443631:-	ONLY_REF_SPLICE	YES	42	75	0.05	0.03	0.0112	0.0112	NCOA1->Oncogene{Bushman},chr2:24714783-24993571:+,nuclear_receptor_coactivator_1,TIA1->TIA1_cytotoxic_granule-associated_RNA_binding_protein,chr2:70436576-70475792:-	NCIH1385_LUNG	0.03	0.05	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	NOC4L--RP5-882C2.2	1	1	NOC4L	5448	chr12:132633440:+	RP5-882C2.2	12147	chr17:42299830:+	ONLY_REF_SPLICE	YES	44	1	0.04	0.67	0.0112	0.0112	NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,RP5-882C2.2->chr17:42298769-42301078:+	NCIH1385_LUNG	0.04	0.67	0.0224	TRUE	0	0	0	2	0	TRUE	ACH-000737
NCIH1385_LUNG	OAZ1--SGTA	1	1	OAZ1	1259	chr19:2269743:+	SGTA	12940	chr19:2769089:-	ONLY_REF_SPLICE	YES	1173	10	0	0.17	0.0112	0.0112	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,SGTA->chr19:2754712-2783369:-,small_glutamine_rich_tetratricopeptide_repeat_containing_alpha	NCIH1385_LUNG	0	0.17	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	PCBP2--CALCB	1	1	PCBP2	15051	chr12:53861077:+	CALCB	35597	chr11:15098832:+	ONLY_REF_SPLICE	YES	1269	228	0	0.01	0.0112	0.0112	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CALCB->calcitonin_related_polypeptide_beta,chr11:14926543-15103888:+	NCIH1385_LUNG	0	0.01	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	RGPD5--BCL2L11	1	1	RGPD5	2605	chr2:110552114:+	BCL2L11	48159	chr2:111907621:+	ONLY_REF_SPLICE	YES	61	20	0.03	0.09	0.0112	0.0112	RGPD5->RANBP2-like_and_GRIP_domain_containing_5,chr2:110550335-110615272:+,BCL2L11->BCL2_like_11,Oncogene{Bushman},chr2:111876955-111926024:+	NCIH1385_LUNG	0.03	0.09	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	RNF216P1--FOXK1	1	1	RNF216P1	1174	chr7:5013792:+	FOXK1	23815	chr7:4780469:+	ONLY_REF_SPLICE	YES	12	30	0.14	0.06	0.0112	0.0112	RNF216P1->chr7:5013619-5080306:+,ring_finger_protein_216_pseudogene_1,FOXK1->chr7:4683388-4811074:+,forkhead_box_K1	NCIH1385_LUNG	0.06	0.14	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	RP11-108K3.1--GLDN	1	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0112	0.0112	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH1385_LUNG	1	1	0.0224	FALSE	1	20	0	46	0	FALSE	ACH-000737
NCIH1385_LUNG	RP11-386G11.10--DMKN	1	1	RP11-386G11.10	2083	chr12:49522647:+	DMKN	7961	chr19:36004560:-	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0112	0.0112	RP11-386G11.10->chr12:49521565-49541652:+,DMKN->chr19:35988122-36004560:-,dermokine	NCIH1385_LUNG	0.33	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	SLC10A4--SLAIN2	1	1	SLC10A4	2800	chr4:48487159:+	SLAIN2	9378	chr4:48371866:+	ONLY_REF_SPLICE	NO	1	17	0.67	0.11	0.0112	0.0112	LOCAL_REARRANGEMENT:+:[57131],SLC10A4->chr4:48485360-48491213:+,solute_carrier_family_10_member_4,SLAIN2->SLAIN_motif_family_member_2,chr4:48343339-48428229:+	NCIH1385_LUNG	0.11	0.67	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000737
NCIH1385_LUNG	TIMM23B--AGAP6	1	1	TIMM23B	5839	chr10:51384357:+	AGAP6	10946	chr10:51749068:+	ONLY_REF_SPLICE	YES	35	8	0.05	0.2	0.0112	0.0112	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,AGAP6->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_6,chr10:51748078-51770259:+	NCIH1385_LUNG	0.05	0.2	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	TMEM18--SH3YL1	1	1	TMEM18	1151	chr2:677289:-	SH3YL1	20991	chr2:253115:-	ONLY_REF_SPLICE	YES	49	4	0.04	0.33	0.0112	0.0112	TMEM18->chr2:667335-677439:-,transmembrane_protein_18,SH3YL1->SH3_and_SYLF_domain_containing_1,chr2:217730-266398:-	NCIH1385_LUNG	0.04	0.33	0.0224	TRUE	1	1	0	2	0	TRUE	ACH-000737
NCIH1385_LUNG	TSC2--FUS	1	1	TSC2	3376	chr16:2100487:+	FUS	46050	chr16:31199646:+	ONLY_REF_SPLICE	YES	36	367	0.05	0.01	0.0112	0.0112	TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH1385_LUNG	0.01	0.05	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	UBAP2L--C1orf43	1	1	UBAP2L	8814	chr1:154209612:+	C1orf43	34789	chr1:154187050:-	ONLY_REF_SPLICE	YES	233	659	0.01	0	0.0112	0.0112	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Artery_-_Coronary=1},NEIGHBORS_OVERLAP:+:-:[449],UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like,C1orf43->chr1:154179182-154193104:-,chromosome_1_open_reading_frame_43	NCIH1385_LUNG	0	0.01	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000737
NCIH1385_LUNG	UVSSA--CTBP1	1	1	UVSSA	7499	chr4:1349033:+	CTBP1	25235	chr4:1232125:-	ONLY_REF_SPLICE	YES	30	181	0.06	0.01	0.0112	0.0112	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH1385_LUNG	0.01	0.06	0.0224	FALSE	2	0	1	2	0	FALSE	ACH-000737
NCIH1385_LUNG	UVSSA--CTBP1	1	1	UVSSA	7499	chr4:1349033:+	CTBP1	37298	chr4:1209993:-	ONLY_REF_SPLICE	YES	30	220	0.06	0.01	0.0112	0.0112	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH1385_LUNG	0.01	0.06	0.0224	FALSE	0	1	0	1	0	FALSE	ACH-000737
UMUC1_URINARY_TRACT	MT-TA--MT-TC	32	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5203	0.0325	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UMUC1_URINARY_TRACT	1	1	0.5528	FALSE	462	80	0	856	0	FALSE	ACH-000834
UMUC1_URINARY_TRACT	LAMC1--MED13	4	0	LAMC1	9460	chr1:183085770:+	MED13	69840	chr17:60020100:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0	LAMC1->chr1:182992595-183114727:+,laminin_subunit_gamma_1,MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13	UMUC1_URINARY_TRACT	1	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	MT-ND4L--MT-ND3	4	0	MT-ND4L	1144	chrM:10613:+	MT-ND3	4322	chrM:10083:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[66],MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L,MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3	UMUC1_URINARY_TRACT	1	1	0.065	FALSE	0	1	0	1	0	FALSE	ACH-000834
UMUC1_URINARY_TRACT	TSPAN15--HKDC1	4	0	TSPAN15	1218	chr10:71211446:+	HKDC1	25529	chr10:71016792:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.065	0	TSPAN15->chr10:71211229-71267425:+,tetraspanin_15,HKDC1->chr10:70980059-71027315:+,hexokinase_domain_containing_1	UMUC1_URINARY_TRACT	1	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	STX3--ATP5A1	2	6	STX3	11078	chr11:59560987:+	ATP5A1	27472	chr18:43675097:-	ONLY_REF_SPLICE	NO	6	70	0.57	0.1	0.0325	0.0976	{Klijn_CCL:Urinary_Bladder=1},STX3->chr11:59480929-59573354:+,syntaxin_3,ATP5A1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_alpha_subunit_1,_cardiac_muscle,chr18:43664110-43684300:-	UMUC1_URINARY_TRACT	0.1	0.57	0.1301	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	CRLF1--MT-ND4L	3	0	CRLF1	2157	chr19:18717395:-	MT-ND4L	14089	chrM:10485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	CRLF1->chr19:18683030-18718551:-,cytokine_receptor_like_factor_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UMUC1_URINARY_TRACT	1	1	0.0488	FALSE	0	0	0	1	0	FALSE	ACH-000834
UMUC1_URINARY_TRACT	CTA-384D8.36--MMP2	3	0	CTA-384D8.36	1656	chr22:50963010:+	MMP2	17629	chr16:55525810:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	CTA-384D8.36->chr22:50962355-50963209:+,MMP2->Oncogene{Bushman},chr16:55423612-55540603:+,matrix_metallopeptidase_2	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	GJB2--YBX3	3	0	GJB2	1081	chr13:20766957:-	YBX3	7520	chr12:10875819:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	GJB2->chr13:20761609-20767037:-,gap_junction_protein_beta_2,YBX3->Y-box_binding_protein_3,chr12:10851683-10875911:-	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	MAST4--CNOT6	3	0	MAST4	50348	chr5:66461467:+	CNOT6	63042	chr5:179991495:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	MAST4->chr5:65892176-66465423:+,microtubule_associated_serine/threonine_kinase_family_member_4,CNOT6->CCR4-NOT_transcription_complex_subunit_6,chr5:179921412-180005405:+	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	MCM5--TAGLN2	3	0	MCM5	16934	chr22:35817453:+	TAGLN2	27202	chr1:159890327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0488	0	MCM5->Oncogene{Bushman},chr22:35796056-35821423:+,minichromosome_maintenance_complex_component_5,TAGLN2->chr1:159887897-159895522:-,transgelin_2	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	MIR31HG--B4GALT1	3	0	MIR31HG	1181	chr9:21559488:-	B4GALT1	8478	chr9:33135422:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0488	0	MIR31HG->MIR31_host_gene,chr9:21455641-21559668:-,B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	MT-CO3--VILL	3	0	MT-CO3	1605	chrM:9811:+	VILL	15528	chr3:38043968:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,VILL->chr3:38029550-38048679:+,villin-like	UMUC1_URINARY_TRACT	1	1	0.0488	FALSE	0	0	0	1	0	FALSE	ACH-000834
UMUC1_URINARY_TRACT	NPM1P27--ERRFI1	3	0	NPM1P27	1347	chr5:93019027:-	ERRFI1	8631	chr1:8073103:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	NPM1P27->chr5:93018544-93019373:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_27,ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	OBFC1--PILRB	3	0	OBFC1	10958	chr10:105642420:-	PILRB	24606	chr7:99954404:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	OBFC1->chr10:105642300-105677963:-,oligonucleotide/oligosaccharide_binding_fold_containing_1,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	PLXNB2--MYH14	3	0	PLXNB2	15198	chr22:50718080:-	MYH14	53638	chr19:50781360:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	PLXNB2->chr22:50713408-50746056:-,plexin_B2,MYH14->chr19:50691443-50813802:+,myosin,_heavy_chain_14,_non-muscle	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	PMEPA1--PDE9A	3	0	PMEPA1	9176	chr20:56227616:-	PDE9A	35163	chr21:44182266:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	PMEPA1->Oncogene{Bushman},chr20:56223448-56286592:-,prostate_transmembrane_protein,_androgen_induced_1,PDE9A->chr21:44073746-44195619:+,phosphodiesterase_9A	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	RP11-982M15.2--EEF1A1P6	3	0	RP11-982M15.2	1670	chr14:105236355:+	EEF1A1P6	5680	chr7:22550862:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	RP11-982M15.2->chr14:105235686-105236608:+,EEF1A1P6->chr7:22550231-22551618:-,eukaryotic_translation_elongation_factor_1_alpha_1_pseudogene_6	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	SPINT2--ITGB4	3	0	SPINT2	9769	chr19:38782824:+	ITGB4	24347	chr17:73733656:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	TSPAN12--HOOK2	3	0	TSPAN12	1170	chr7:120498287:-	HOOK2	18271	chr19:12903237:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	TSPAN12->chr7:120427376-120498456:-,tetraspanin_12,HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2	UMUC1_URINARY_TRACT	1	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	ACSL4--COL4A5	2	0	ACSL4	1265	chrX:108976368:-	COL4A5	34863	chrX:107814643:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	ACSL4->acyl-CoA_synthetase_long-chain_family_member_4,chrX:108867473-108976632:-,COL4A5->chrX:107683074-107940775:+,collagen_type_IV_alpha_5	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	CDC42EP4--PGS1	2	0	CDC42EP4	1283	chr17:71308032:-	PGS1	22962	chr17:76410960:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	CDC42EP4->CDC42_effector_protein_4,chr17:71279763-71308314:-,PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	CDR2--SP1	2	0	CDR2	8528	chr16:22433482:-	SP1	20567	chr12:53775443:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	CDR2->cerebellar_degeneration_related_protein_2,chr16:22357257-22448486:-,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	EPHA1--GSTK1	2	0	EPHA1	10035	chr7:143091901:-	GSTK1	22164	chr7:142965881:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	EPHA1->EPH_receptor_A1,Oncogene{Bushman},chr7:143087382-143105985:-,GSTK1->chr7:142941186-142967947:+,glutathione_S-transferase_kappa_1	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	MAP3K13--VPS8	2	0	MAP3K13	2430	chr3:185003431:+	VPS8	92551	chr3:184766267:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	MIR205HG--GANAB	2	0	MIR205HG	1589	chr1:209602753:+	GANAB	13430	chr11:62400217:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	PCIF1--ADRM1	2	0	PCIF1	8269	chr20:44573669:+	ADRM1	17748	chr20:60881253:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	PCIF1->PDX1_C-terminal_inhibiting_factor_1,chr20:44563267-44576662:+,ADRM1->adhesion_regulating_molecule_1,chr20:60877149-60883918:+	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	RP11-65J3.1--SUPT3H	2	0	RP11-65J3.1	4703	chr9:132101196:+	SUPT3H	28426	chr6:44797594:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	RP11-65J3.1->chr9:132094579-132121817:+,SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	TALDO1--ASNS	2	0	TALDO1	1250	chr11:747578:+	ASNS	19414	chr7:97488267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	TALDO1->chr11:747329-765024:+,transaldolase_1,ASNS->Oncogene{Bushman},asparagine_synthetase_(glutamine-hydrolyzing),chr7:97481430-97501854:-	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	TM9SF4--C1orf63	2	0	TM9SF4	2648	chr20:30720929:+	C1orf63	37792	chr1:25570124:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	TM9SF4->chr20:30697309-30755061:+,transmembrane_9_superfamily_member_4,C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	TNIK--NCEH1	2	0	TNIK	1402	chr3:171177796:-	NCEH1	46439	chr3:172365904:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	TNIK->TRAF2_and_NCK_interacting_kinase,chr3:170779128-171178197:-,NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	YKT6--NUP93	2	0	YKT6	5169	chr7:44247797:+	NUP93	40455	chr16:56878411:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	YKT6->YKT6_v-SNARE_homolog_(S._cerevisiae),chr7:44240567-44253893:+,NUP93->ArcherDX_panel,FoundationOne_panel,chr16:56764017-56878797:+,nucleoporin_93kDa	UMUC1_URINARY_TRACT	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000834
UMUC1_URINARY_TRACT	SLC25A36--WDR72	1	1	SLC25A36	5624	chr3:140682069:+	WDR72	45453	chr15:53815519:-	ONLY_REF_SPLICE	YES	3	15	0.4	0.12	0.0163	0.0163	SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,WDR72->WD_repeat_domain_72,chr15:53805938-54055075:-	UMUC1_URINARY_TRACT	0.12	0.4	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000834
LS513_LARGE_INTESTINE	LUZP1--TMCO4	60	7	LUZP1	2577	chr1:23495259:-	TMCO4	38383	chr1:20009937:-	ONLY_REF_SPLICE	YES	1	61	0.99	0.52	0.6671	0.0778	LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1,TMCO4->chr1:20008706-20126438:-,transmembrane_and_coiled-coil_domains_4	LS513_LARGE_INTESTINE	0.52	0.99	0.7449	TRUE	0	0	0	2	0	TRUE	ACH-000007
LS513_LARGE_INTESTINE	IQGAP1--FAM174B	50	43	IQGAP1	2279	chr15:90934105:+	FAM174B	56743	chr15:93173575:-	ONLY_REF_SPLICE	YES	285	12	0.25	0.89	0.5559	0.4781	IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,FAM174B->chr15:93160673-93353114:-,family_with_sequence_similarity_174_member_B	LS513_LARGE_INTESTINE	0.25	0.89	1.034	TRUE	0	0	0	2	0	TRUE	ACH-000007
LS513_LARGE_INTESTINE	MT-TA--MT-TC	53	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5893	0.0889	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS513_LARGE_INTESTINE	1	1	0.6782	FALSE	462	80	0	856	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	TIMM23B--LINC00843	32	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3558	0.189	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LS513_LARGE_INTESTINE	1	1	0.5448	TRUE	508	994	45	981	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	OR51S1--TP53I11	34	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.378	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	LS513_LARGE_INTESTINE	1	1	0.378	TRUE	402	216	10	229	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	29	1	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	10090	0	0	1	0.3224	0.0111	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	1	0.3335	FALSE	230	193	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	ZNF654--HMGB2	25	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.278	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LS513_LARGE_INTESTINE	1	1	0.278	TRUE	0	0	0	518	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	TIMM23--RP11-464F9.1	22	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	285	13	0.08	0.67	0.2446	0.0445	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LS513_LARGE_INTESTINE	0.08	0.67	0.2891	TRUE	519	3926	326	965	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	PLXDC1--TAF13	20	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2224	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	LS513_LARGE_INTESTINE	1	1	0.2224	TRUE	7	10	0	216	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	18	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	14178	12	0	0.61	0.2001	0.0111	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0.61	0.2112	FALSE	230	193	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	14	1	MT-ND4	1152	chrM:10911:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	10106	5	0	0.75	0.1557	0.0111	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0.75	0.1668	FALSE	230	193	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	NPM1P24--SET	14	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1557	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LS513_LARGE_INTESTINE	1	1	0.1557	TRUE	0	0	0	434	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	C15orf57--CBX3	10	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	79	110	0.23	0.18	0.1112	0.1557	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LS513_LARGE_INTESTINE	0.18	0.23	0.2669	TRUE	267	562	48	632	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	C15orf57--CBX3	10	13	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	79	111	0.23	0.17	0.1112	0.1445	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LS513_LARGE_INTESTINE	0.17	0.23	0.2557	TRUE	267	562	48	632	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	12	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1334	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	1	1	0.1334	FALSE	230	198	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	27	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17795	0	0	1	0.0556	0.3002	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	1	0.3558	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	19	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18431	0	0	1	0.0778	0.2112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	1	0.289	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	27	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	17920	0	0	1	0.0556	0.3002	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	1	0.3558	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-TA--MT-TC	9	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1001	0.1112	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS513_LARGE_INTESTINE	1	1	0.2113	FALSE	462	80	0	856	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	CALM3--MT-ND4L	9	9	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1446	0	0.01	1	0.1001	0.1001	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS513_LARGE_INTESTINE	0.01	1	0.2002	FALSE	1	1	0	107	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	17	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18175	110	0	0.18	0.0778	0.189	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0.18	0.2668	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	17	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18891	14	0	0.63	0.0778	0.189	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0.63	0.2668	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	12	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20764	0	0	1	0.0889	0.1334	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	1	0.2223	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-TA--MT-TC	9	8	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1001	0.0889	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS513_LARGE_INTESTINE	1	1	0.189	FALSE	462	80	0	856	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	27	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	18042	0	0	1	0.0445	0.3002	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	1	0.3447	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	19	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	18336	0	0	1	0.0667	0.2112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	1	0.2779	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	8	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	0	0.83	1	0.0889	0.1223	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LS513_LARGE_INTESTINE	0.83	1	0.2112	FALSE	515	4851	409	746	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	28	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	16920	0	0	1	0.0334	0.3113	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	1	0.3447	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	23	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15862	110	0	0.2	0.0445	0.2557	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0.2	0.3002	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	23	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	15862	288	0	0.09	0.0445	0.2557	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0.09	0.3002	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	23	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	7382	654	0	0.04	0.0445	0.2557	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0.04	0.3002	FALSE	231	215	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	LRBA--SH3D19	8	6	LRBA	38254	chr4:151682935:-	SH3D19	88953	chr4:152070713:-	ONLY_REF_SPLICE	YES	117	256	0.11	0.05	0.0889	0.0667	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},YOSHIHARA_TCGA_num_samples[BLCA:1|HNSC:1|LUSC:1],{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[87024],LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,SH3D19->SH3_domain_containing_19,chr4:152023903-152246784:-	LS513_LARGE_INTESTINE	0.05	0.11	0.1556	TRUE	0	4	0	2	4	TRUE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	22	MT-ND4	1774	chrM:11533:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	NO	18875	0	0	1	0.0445	0.2446	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	1	0.2891	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	SLC1A5--MT-ND4L	9	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1274	0	0.01	1	0.1001	0.0222	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS513_LARGE_INTESTINE	0.01	1	0.1223	FALSE	0	0	0	189	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16856	14	0	0.42	0.1001	0.0111	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0.42	0.1112	FALSE	231	205	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	13	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	18773	1743	0	0.01	0.0667	0.1445	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0.01	0.2112	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	12	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	20768	0	0	1	0.0667	0.1334	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	1	0.2001	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	PFKL--MT-ND4L	7	4	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	809	0	0.01	1	0.0778	0.0445	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS513_LARGE_INTESTINE	0.01	1	0.1223	FALSE	0	0	0	33	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	10	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	22723	907	0	0.02	0.0556	0.1112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0.02	0.1668	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	13	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	20733	0	0	1	0.0445	0.1445	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	1	0.189	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	15	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	18891	1040	0	0.02	0.0334	0.1668	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0.02	0.2002	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	10	MT-ND4	1545	chrM:11304:+	MT-ATP8	5497	chrM:8484:+	INCL_NON_REF_SPLICE	YES	22787	839	0	0.02	0.0445	0.1112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0.02	0.1557	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	8	MT-ND4	1311	chrM:11070:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	20472	0	0	1	0.0445	0.0889	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	1	0.1334	FALSE	231	205	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	ASS1--MT-CO3	5	3	ASS1	7359	chr9:133339534:+	MT-CO3	21796	chrM:9549:+	INCL_NON_REF_SPLICE	YES	3757	19541	0	0	0.0556	0.0334	ASS1->argininosuccinate_synthase_1,chr9:133320316-133376661:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	LS513_LARGE_INTESTINE	0	0	0.089	FALSE	0	0	0	12	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-CO2--S100A6	5	3	MT-CO2	1233	chrM:7818:+	S100A6	4935	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	22515	18	0	0.31	0.0556	0.0334	MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	LS513_LARGE_INTESTINE	0	0.31	0.089	FALSE	0	0	0	4	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	11	MT-ND4	1531	chrM:11290:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	23185	14	0	0.5	0.0334	0.1223	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0.5	0.1557	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	11	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	23007	288	0	0.05	0.0334	0.1223	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0.05	0.1557	FALSE	231	217	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0556	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	1	1	0.0556	FALSE	351	233	23	137	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0556	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	1	1	0.0556	FALSE	230	198	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0556	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	1	1	0.0556	FALSE	231	205	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-TA--MT-TC	3	8	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0.0889	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS513_LARGE_INTESTINE	1	1	0.1223	FALSE	462	80	0	856	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	7	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19093	0	0	1	0.0334	0.0778	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	1	0.1112	FALSE	231	205	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	7	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	21925	2	0	0.83	0.0334	0.0778	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0.83	0.1112	FALSE	231	216	16	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	4	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0445	0.0334	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	LS513_LARGE_INTESTINE	0.88	1	0.0779	FALSE	81	155	12	160	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	5	MT-ND4	1294	chrM:11053:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	18199	5	0	0.62	0.0334	0.0556	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0.62	0.089	FALSE	231	205	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	5	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	20600	1743	0	0	0.0334	0.0556	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0	0.089	FALSE	231	205	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	NO	59	1952	0.08	0	0.0445	0.0111	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LS513_LARGE_INTESTINE	0	0.08	0.0556	FALSE	0	0	0	434	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	4	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18973	110	0	0.06	0.0334	0.0445	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	0.06	0.0779	FALSE	231	205	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	0	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0445	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	1	1	0.0445	FALSE	231	205	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0.0445	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LS513_LARGE_INTESTINE	1	1	0.0779	FALSE	462	80	0	856	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0111	0.1334	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LS513_LARGE_INTESTINE	1	1	0.1445	FALSE	467	2173	244	435	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	SLC1A5--MT-ND4L	3	3	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1270	0	0	1	0.0334	0.0334	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LS513_LARGE_INTESTINE	0	1	0.0668	FALSE	0	0	0	189	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	2	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	14191	0	0	1	0.0334	0.0222	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	1	0.0556	FALSE	230	197	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	14571	0	0	1	0.0334	0.0111	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	0	1	0.0445	FALSE	231	204	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	59	1962	0.06	0	0.0334	0.0111	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LS513_LARGE_INTESTINE	0	0.06	0.0445	FALSE	0	0	0	434	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	1	1	0.0334	FALSE	231	204	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5571	chrM:8558:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	1	1	0.0334	FALSE	231	204	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LS513_LARGE_INTESTINE	1	1	0.0334	FALSE	231	204	14	283	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	SURF4--RPLP1	3	0	SURF4	7220	chr9:136229378:-	RPLP1	11318	chr15:69745167:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	SURF4->chr9:136228325-136242970:-,surfeit_4,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	LS513_LARGE_INTESTINE	1	1	0.0334	TRUE	0	0	0	4	0	TRUE	ACH-000007
LS513_LARGE_INTESTINE	CPSF6--TSC22D1	2	1	CPSF6	11046	chr12:69656342:+	TSC22D1	31082	chr13:45009019:-	ONLY_REF_SPLICE	YES	225	2595	0.01	0	0.0222	0.0111	GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Putamen_(basal_ganglia)=1,Brain_-_Hippocampus=1,Prostate=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,TSC22D1->TSC22_domain_family_member_1,chr13:45007655-45151283:-	LS513_LARGE_INTESTINE	0	0.01	0.0333	FALSE	1	0	0	1	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	CTC-228N24.3--SLC12A2	2	1	CTC-228N24.3	5579	chr5:127396836:-	SLC12A2	22270	chr5:127448506:+	ONLY_REF_SPLICE	YES	271	1230	0.01	0	0.0222	0.0111	LOCAL_INVERSION:-:+:[594],CTC-228N24.3->chr5:127276118-127418864:-,SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2	LS513_LARGE_INTESTINE	0	0.01	0.0333	FALSE	0	0	0	1	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	MED10--HSD17B4	2	0	MED10	4159	chr5:6374437:-	HSD17B4	30378	chr5:118860911:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	MED10->chr5:6371994-6378707:-,mediator_complex_subunit_10,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	LS513_LARGE_INTESTINE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000007
LS513_LARGE_INTESTINE	MST1R--LAMTOR4	2	0	MST1R	4700	chr3:49935484:-	LAMTOR4	17866	chr7:99751023:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	MST1R->Oncogene{Bushman},chr3:49924435-49941299:-,macrophage_stimulating_1_receptor,LAMTOR4->chr7:99746530-99753567:+,late_endosomal/lysosomal_adaptor,_MAPK_and_MTOR_activator_4	LS513_LARGE_INTESTINE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000007
LS513_LARGE_INTESTINE	PROSC--CHMP1A	2	0	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	LS513_LARGE_INTESTINE	1	1	0.0222	TRUE	13	55	3	29	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	RPS3--MKI67	2	0	RPS3	2292	chr11:75111821:+	MKI67	16082	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	LS513_LARGE_INTESTINE	1	1	0.0222	TRUE	0	0	0	4	0	TRUE	ACH-000007
LS513_LARGE_INTESTINE	UBAC2--TM9SF2	2	0	UBAC2	1166	chr13:99853193:+	TM9SF2	23444	chr13:100169868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,TM9SF2->chr13:100153671-100216260:+,transmembrane_9_superfamily_member_2	LS513_LARGE_INTESTINE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000007
LS513_LARGE_INTESTINE	ADAP1--C7orf50	1	3	ADAP1	9672	chr7:959605:-	C7orf50	29696	chr7:1049779:-	ONLY_REF_SPLICE	YES	955	418	0	0.01	0.0111	0.0334	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_REARRANGEMENT:-:[41579],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	LS513_LARGE_INTESTINE	0	0.01	0.0445	FALSE	0	6	0	10	1	FALSE	ACH-000007
LS513_LARGE_INTESTINE	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	955	361	0	0.01	0.0111	0.0111	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	LS513_LARGE_INTESTINE	0	0.01	0.0222	FALSE	16	22	0	27	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	CPSF6--TSC22D1	1	1	CPSF6	11046	chr12:69656342:+	TSC22D1	29870	chr13:45010231:-	ONLY_REF_SPLICE	YES	225	2401	0.01	0	0.0111	0.0111	GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Putamen_(basal_ganglia)=1,Brain_-_Hippocampus=1,Prostate=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,TSC22D1->TSC22_domain_family_member_1,chr13:45007655-45151283:-	LS513_LARGE_INTESTINE	0	0.01	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	FKBP14--SRSF11	1	1	FKBP14	2525	chr7:30062281:-	SRSF11	29654	chr1:70715635:+	ONLY_REF_SPLICE	YES	30	377	0.06	0.01	0.0111	0.0111	FKBP14->FK506_binding_protein_14,chr7:30050203-30066300:-,SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11	LS513_LARGE_INTESTINE	0.01	0.06	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	HOXB3--TGIF1	1	1	HOXB3	2581	chr17:46667487:-	TGIF1	32770	chr18:3456352:+	ONLY_REF_SPLICE	NO	45	490	0.04	0	0.0111	0.0111	HOXB3->chr17:46626232-46682274:-,homeobox_B3,TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+	LS513_LARGE_INTESTINE	0	0.04	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	LSR--HNRNPUL1	1	1	LSR	3330	chr19:35741562:+	HNRNPUL1	15872	chr19:41774128:+	ONLY_REF_SPLICE	YES	506	186	0	0.01	0.0111	0.0111	LSR->chr19:35739233-35758867:+,lipolysis_stimulated_lipoprotein_receptor,HNRNPUL1->chr19:41768401-41813503:+,heterogeneous_nuclear_ribonucleoprotein_U_like_1	LS513_LARGE_INTESTINE	0	0.01	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000007
LS513_LARGE_INTESTINE	TTC12--CHMP1A	1	1	TTC12	8631	chr11:113205759:+	CHMP1A	35836	chr16:89713739:-	ONLY_REF_SPLICE	YES	142	432	0.01	0	0.0111	0.0111	{Klijn_CCL:Brain=1},TTC12->chr11:113185251-113254266:+,tetratricopeptide_repeat_domain_12,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	LS513_LARGE_INTESTINE	0	0.01	0.0222	FALSE	0	3	0	2	0	FALSE	ACH-000007
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	136	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.0177	0.3561	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.3738	TRUE	508	994	45	981	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PUM1--RP11-26E5.1	114	45	PUM1	7284	chr1:31479841:-	RP11-26E5.1	34527	chr8:130452220:+	ONLY_REF_SPLICE	YES	56	0	0.74	1	1.6913	0.6676	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,RP11-26E5.1->chr8:130428195-130458098:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	2.3589	TRUE	0	0	0	1	0	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	113	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6765	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.6765	TRUE	0	0	0	518	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	74	46	BCR	21553	chr22:23632600:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	35	0	0.77	1	1.0979	0.6825	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	1.7804	TRUE	0	2	1	16	2	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	85	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	129	5	0.4	0.95	1.2611	0.0148	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.95	1.2759	TRUE	519	3926	326	965	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	55	14	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	0	32	1	0.68	0.816	0.2077	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	1	1.0237	TRUE	0	2	0	9	2	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	55	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	76	1	0.44	0.816	0.0742	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.8902	TRUE	465	1949	224	605	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PUM1--RP11-26E5.1	41	24	PUM1	6137	chr1:31501643:-	RP11-26E5.1	34527	chr8:130452220:+	ONLY_REF_SPLICE	YES	102	0	0.39	1	0.6083	0.3561	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,RP11-26E5.1->chr8:130428195-130458098:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.9644	TRUE	0	0	0	1	0	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	46	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6825	0.0445	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.727	FALSE	462	80	0	856	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-219G17.4--PLA2G6	43	0	RP11-219G17.4	2765	chr17:76267333:-	PLA2G6	39371	chr22:38509661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.638	0	GTEx_FI:{Testis=[count:23=pct:21.9],Brain=[count:18=pct:2.7],Nerve=[count:11=pct:6.5],Thyroid=[count:8=pct:4.5],Ovary=[count:6=pct:11.3],Colon=[count:5=pct:2.6],Pancreas=[count:3=pct:1.7],Uterus=[count:2=pct:4.7],Spleen=[count:2=pct:1.8],Blood=[count:2=pct:1.1],Prostate=[count:2=pct:3.3],Vagina=[count:1=pct:1.8],Blood_Vessel=[count:1=pct:0.3],Muscle=[count:1=pct:0.4],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},RP11-219G17.4->chr17:76257430-76274573:-,PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.638	TRUE	63	15	0	9	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	25	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.85	0.3709	0.1335	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.5044	TRUE	458	1351	185	561	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	18	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2671	0.0742	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3413	FALSE	499	1288	110	792	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	18	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2671	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2671	FALSE	13	9	0	364	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAML3--FAF1	17	2	MAML3	2325	chr4:141074014:-	FAF1	39783	chr1:50907195:-	ONLY_REF_SPLICE	YES	1	114	0.95	0.14	0.2522	0.0297	MAML3->chr4:140637907-141075338:-,mastermind_like_transcriptional_coactivator_3,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.95	0.2819	TRUE	0	0	0	1	0	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	14	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2077	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2077	TRUE	0	0	0	81	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	12	4	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	44	0	0.27	1	0.178	0.0593	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.2373	FALSE	272	151	14	158	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	33	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.0593	0.4896	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.5489	FALSE	189	492	56	216	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PUM1--RP11-26E5.1	1	45	PUM1	8425	chr1:31478700:-	RP11-26E5.1	34527	chr8:130452220:+	ONLY_REF_SPLICE	NO	39	0	0.54	1	0.0148	0.6676	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,RP11-26E5.1->chr8:130428195-130458098:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	1	0.6824	TRUE	0	0	0	1	0	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	36	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	2	0	0.95	1	0.0445	0.5341	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.5786	FALSE	189	492	56	216	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	8	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	45	12	0.33	0.65	0.1187	0.2077	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.65	0.3264	TRUE	267	562	48	632	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	4	28	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	26	0	0.55	1	0.0593	0.4154	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.4747	TRUE	0	2	1	16	2	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	32	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.95	0.0445	0.4748	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.5193	FALSE	189	492	56	216	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1187	0.1632	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2819	FALSE	499	1288	110	792	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1187	0.1335	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2522	FALSE	499	1288	110	792	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	10	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1484	0.0148	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1632	FALSE	462	80	0	856	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1187	0.0742	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1929	FALSE	499	1288	110	792	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	9	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.1335	0.0148	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1483	FALSE	16	356	14	466	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1039	0.0742	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1781	FALSE	462	80	0	856	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1039	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1039	FALSE	462	80	0	856	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	43	12	0.25	0.54	0.0593	0.1484	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.54	0.2077	TRUE	267	562	48	632	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.089	0.0297	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	0.1187	FALSE	189	492	56	216	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	6	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.089	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.089	TRUE	0	0	0	81	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.089	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.089	FALSE	13	9	0	364	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	11	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0445	0.1632	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2077	FALSE	189	492	56	216	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCAT1--RP11-382A18.2	4	2	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0593	0.0297	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.089	TRUE	4	84	1	46	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DYNLRB1--FRG1	4	0	DYNLRB1	6082	chr20:33122599:+	FRG1	13470	chr4:190864357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0593	0	DYNLRB1->chr20:33104214-33128762:+,dynein_light_chain_roadblock-type_1,FRG1->FSHD_region_gene_1,chr4:190861943-190884359:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	4	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.7	0.0445	0.0593	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	1	0.1038	FALSE	189	492	56	216	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NSMCE2--ZNF341	4	0	NSMCE2	3820	chr8:126114729:+	ZNF341	27864	chr20:32354657:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0593	0	NSMCE2->NSE2/MMS21_homolog,_SMC5-SMC6_complex_SUMO_ligase,chr8:126103921-126379362:+,ZNF341->chr20:32319463-32380075:+,zinc_finger_protein_341	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NSMCE2--ZNF341	4	0	NSMCE2	3820	chr8:126114729:+	ZNF341	26670	chr20:32349668:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0593	0	NSMCE2->NSE2/MMS21_homolog,_SMC5-SMC6_complex_SUMO_ligase,chr8:126103921-126379362:+,ZNF341->chr20:32319463-32380075:+,zinc_finger_protein_341	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	4	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0593	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0593	FALSE	0	0	0	189	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	3	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	YES	44	0	0.1	1	0.0445	0.0297	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.0742	FALSE	28	14	1	23	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0445	0.0148	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0593	FALSE	292	1546	117	613	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA2B--CBS	3	0	ITGA2B	9912	chr17:42454377:-	CBS	37101	chr21:44474093:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0445	0	ITGA2B->chr17:42449548-42466873:-,integrin_subunit_alpha_2b,CBS->chr21:44473301-44497053:-,cystathionine-beta-synthase	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0445	TRUE	0	0	0	1	0	TRUE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1153	chrM:9359:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0445	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0445	FALSE	189	492	56	216	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0297	0.0148	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.0445	FALSE	125	705	46	456	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0.0148	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0445	FALSE	515	4851	409	746	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WTAPP1--RUVBL1	2	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0297	TRUE	9	252	6	66	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-634B7.4--TRIM58	1	2	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	10	1	0.23	0.0148	0.0297	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.0445	TRUE	158	633	76	73	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0148	0.0297	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0445	TRUE	62	24	1	171	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C8orf76--ATAD2	1	1	C8orf76	1169	chr8:124253470:-	ATAD2	32293	chr8:124351686:-	ONLY_REF_SPLICE	YES	433	892	0	0	0.0148	0.0148	LOCAL_REARRANGEMENT:-:[78452],C8orf76->chr8:124232196-124253638:-,chromosome_8_open_reading_frame_76,ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0296	FALSE	0	0	0	1	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C8orf76--FAM83A	1	1	C8orf76	4354	chr8:124250038:-	FAM83A	19934	chr8:124219397:+	ONLY_REF_SPLICE	YES	383	28	0.01	0.07	0.0148	0.0148	LOCAL_INVERSION:-:+:[9882],C8orf76->chr8:124232196-124253638:-,chromosome_8_open_reading_frame_76,FAM83A->chr8:124191200-124222314:+,family_with_sequence_similarity_83_member_A	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.07	0.0296	FALSE	0	0	0	1	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPM--ELAVL1	1	1	HNRNPM	1345	chr19:8509995:+	ELAVL1	24831	chr19:8056715:-	ONLY_REF_SPLICE	YES	291	0	0.01	1	0.0148	0.0148	HGNC_GENEFAM,HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0296	FALSE	0	0	0	3	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTHFD2--STAMBP	1	1	MTHFD2	1181	chr2:74425869:+	STAMBP	31587	chr2:74097270:+	ONLY_REF_SPLICE	YES	719	4	0	0.33	0.0148	0.0148	MTHFD2->chr2:74425689-74444692:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_2,_methenyltetrahydrofolate_cyclohydrolase,STAMBP->STAM_binding_protein,chr2:74056086-74100786:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.33	0.0296	FALSE	0	0	0	1	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	13	0	0.13	1	0.0148	0.0148	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.0296	FALSE	164	806	69	479	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--PPP6R2	1	1	OAZ1	1259	chr19:2269743:+	PPP6R2	23324	chr22:50873395:+	ONLY_REF_SPLICE	YES	2086	68	0	0.03	0.0148	0.0148	GTEx_FI:{Blood=[count:2=pct:1.1],Lung=[count:1=pct:0.6],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=6;pct=0.07%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Artery_-_Tibial=1,Lung=1,Whole_Blood=1,Colon_-_Sigmoid=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0296	FALSE	6	1	0	7	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0148	0.0148	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0296	FALSE	467	2173	244	435	0	FALSE	ACH-000326
JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMCC3--USP44	1	1	TMCC3	1210	chr12:95044129:-	USP44	22382	chr12:95928102:-	ONLY_REF_SPLICE	YES	3	6	0.4	0.25	0.0148	0.0148	TMCC3->chr12:94960900-95044338:-,transmembrane_and_coiled-coil_domain_family_3,USP44->chr12:95910336-95945266:-,ubiquitin_specific_peptidase_44	JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.4	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000326
NCIH1755_LUNG	FAM102B--UQCC1	623	142	FAM102B	1477	chr1:109103187:+	UQCC1	32350	chr20:33935075:-	ONLY_REF_SPLICE	YES	8	70	0.99	0.92	6.0711	1.3838	FAM102B->chr1:109102711-109187522:+,family_with_sequence_similarity_102_member_B,UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1	NCIH1755_LUNG	0.92	0.99	7.4549	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	PYROXD1--CCDC91	148	72	PYROXD1	3005	chr12:21593382:+	CCDC91	42855	chr12:28603094:+	ONLY_REF_SPLICE	YES	37	46	0.86	0.83	1.4422	0.7016	PYROXD1->chr12:21590549-21623300:+,pyridine_nucleotide-disulphide_oxidoreductase_domain_1,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	NCIH1755_LUNG	0.83	0.86	2.1438	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	TIMM23B--LINC00843	145	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.413	0.3313	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1755_LUNG	0.99	1	1.7443	TRUE	508	994	45	981	0	FALSE	ACH-000282
NCIH1755_LUNG	AP003900.6--AP000345.1	99	1	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.9647	0.0097	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1755_LUNG	1	1	0.9744	TRUE	4	17	0	31	0	FALSE	ACH-000282
NCIH1755_LUNG	TIMM23--RP11-464F9.1	91	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	210	5	0.31	0.95	0.8868	0.0195	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1755_LUNG	0.31	0.95	0.9063	TRUE	519	3926	326	965	0	FALSE	ACH-000282
NCIH1755_LUNG	UBE2N--GPR182	79	1	UBE2N	1408	chr12:93835631:-	GPR182	12749	chr12:57388270:+	INCL_NON_REF_SPLICE	YES	21	0	0.79	1	0.7698	0.0097	UBE2N->chr12:93799449-93836038:-,ubiquitin_conjugating_enzyme_E2_N,GPR182->G_protein-coupled_receptor_182,chr12:57388230-57390468:+	NCIH1755_LUNG	0.79	1	0.7795	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	TBCD--FN3KRP	51	15	TBCD	20005	chr17:80842078:+	FN3KRP	56543	chr17:80676782:+	ONLY_REF_SPLICE	YES	74	184	0.47	0.26	0.497	0.1462	LOCAL_REARRANGEMENT:+:[21736],TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D,FN3KRP->chr17:80674559-80688204:+,fructosamine_3_kinase_related_protein	NCIH1755_LUNG	0.26	0.47	0.6432	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	DYNLRB1--RP11-782C8.2	52	0	DYNLRB1	1053	chr20:33104266:+	RP11-782C8.2	20527	chr1:143188628:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5067	0	DYNLRB1->chr20:33104214-33128762:+,dynein_light_chain_roadblock-type_1,RP11-782C8.2->chr1:143118704-143211070:-	NCIH1755_LUNG	1	1	0.5067	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	MYH9--RP11-6B19.2	46	14	MYH9	27169	chr22:36694965:-	RP11-6B19.2	45688	chr12:15970044:-	ONLY_REF_SPLICE	YES	583	0	0.09	1	0.4483	0.1364	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,RP11-6B19.2->chr12:15966427-15981208:-	NCIH1755_LUNG	0.09	1	0.5847	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	39	7	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1736	4	0.03	0.92	0.3801	0.0682	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0.03	0.92	0.4483	FALSE	43	37	8	105	0	FALSE	ACH-000282
NCIH1755_LUNG	RP11-680G10.1--GSE1	36	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	59	1	0.43	0.3508	0.0877	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1755_LUNG	0.43	1	0.4385	TRUE	465	1949	224	605	0	FALSE	ACH-000282
NCIH1755_LUNG	PTK2--RP11-809O17.1	28	7	PTK2	2092	chr8:142011224:-	RP11-809O17.1	67687	chr8:142136570:-	ONLY_REF_SPLICE	YES	94	2	0.27	0.95	0.2729	0.0682	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,RP11-809O17.1->chr8:142136143-142140060:-	NCIH1755_LUNG	0.27	0.95	0.3411	TRUE	0	3	0	1	3	TRUE	ACH-000282
NCIH1755_LUNG	PYROXD1--CCDC91	9	76	PYROXD1	3005	chr12:21593382:+	CCDC91	41670	chr12:28565687:+	ONLY_REF_SPLICE	YES	37	42	0.7	0.67	0.0877	0.7406	PYROXD1->chr12:21590549-21623300:+,pyridine_nucleotide-disulphide_oxidoreductase_domain_1,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	NCIH1755_LUNG	0.67	0.7	0.8283	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	MT-ND6--MT-TE	23	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2241	0.0195	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1755_LUNG	1	1	0.2436	FALSE	499	1288	110	792	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	18	19	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.1754	0.1852	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0.95	1	0.3606	FALSE	43	37	8	105	0	FALSE	ACH-000282
NCIH1755_LUNG	RP11-680G10.1--GSE1	19	11	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.81	0.1852	0.1072	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1755_LUNG	0.81	1	0.2924	TRUE	458	1351	185	561	0	FALSE	ACH-000282
NCIH1755_LUNG	PYROXD1--CCDC91	3	73	PYROXD1	3005	chr12:21593382:+	CCDC91	41775	chr12:28565792:+	INCL_NON_REF_SPLICE	YES	37	43	0.67	0.64	0.0292	0.7114	PYROXD1->chr12:21590549-21623300:+,pyridine_nucleotide-disulphide_oxidoreductase_domain_1,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	NCIH1755_LUNG	0.64	0.67	0.7406	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	C15orf57--CBX3	17	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	18	21	0.6	0.56	0.1657	0.0974	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1755_LUNG	0.56	0.6	0.2631	TRUE	267	562	48	632	0	FALSE	ACH-000282
NCIH1755_LUNG	DYNLRB1--RP11-782C8.2	18	0	DYNLRB1	1053	chr20:33104266:+	RP11-782C8.2	21976	chr1:143186607:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1754	0	DYNLRB1->chr20:33104214-33128762:+,dynein_light_chain_roadblock-type_1,RP11-782C8.2->chr1:143118704-143211070:-	NCIH1755_LUNG	1	1	0.1754	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	MT-ND4--MT-ATP8	15	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1462	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	1	1	0.1462	FALSE	231	205	14	283	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	13	7	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3941	45	0.01	0.31	0.1267	0.0682	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0.01	0.31	0.1949	FALSE	43	37	8	105	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND6--MT-TE	11	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1072	0.1462	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1755_LUNG	1	1	0.2534	FALSE	499	1288	110	792	0	FALSE	ACH-000282
NCIH1755_LUNG	HSP90AB1--MT-RNR2	14	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1614	0	0.01	1	0.1364	0.0097	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1755_LUNG	0.01	1	0.1461	FALSE	13	9	0	364	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ATP6--MT-CO1	13	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	6850	16390	0	0	0.1267	0.0195	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1755_LUNG	0	0	0.1462	FALSE	183	104	9	328	0	FALSE	ACH-000282
NCIH1755_LUNG	NRIP1--AF127936.7	13	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1267	0.0195	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1755_LUNG	0.94	1	0.1462	FALSE	292	1546	117	613	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND4--MT-ATP8	13	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1267	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	1	1	0.1267	FALSE	230	198	14	283	0	FALSE	ACH-000282
NCIH1755_LUNG	CTD-2008L17.1--RP11-456O19.2	12	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	3	1	0.83	0.94	0.1169	0.0292	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1755_LUNG	0.83	0.94	0.1461	FALSE	33	240	4	98	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND6--MT-TE	12	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1169	0.0195	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1755_LUNG	1	1	0.1364	FALSE	499	1288	110	792	0	FALSE	ACH-000282
NCIH1755_LUNG	FAM102B--UQCC1	7	20	FAM102B	1477	chr1:109103187:+	UQCC1	37184	chr20:33902568:-	ONLY_REF_SPLICE	YES	8	52	0.77	0.34	0.0682	0.1949	FAM102B->chr1:109102711-109187522:+,family_with_sequence_similarity_102_member_B,UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1	NCIH1755_LUNG	0.34	0.77	0.2631	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1072	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1755_LUNG	1	1	0.1072	TRUE	0	0	0	434	0	FALSE	ACH-000282
NCIH1755_LUNG	PTK2--RP11-809O17.1	9	7	PTK2	2092	chr8:142011224:-	RP11-809O17.1	65464	chr8:142139904:-	INCL_NON_REF_SPLICE	YES	94	0	0.15	1	0.0877	0.0682	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,RP11-809O17.1->chr8:142136143-142140060:-	NCIH1755_LUNG	0.15	1	0.1559	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	HSP90AB1--MT-RNR2	10	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1614	0	0.01	1	0.0974	0.0195	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1755_LUNG	0.01	1	0.1169	FALSE	13	9	0	364	0	FALSE	ACH-000282
NCIH1755_LUNG	RP11-123O10.4--GRIP1	10	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0974	0.0195	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1755_LUNG	0.92	1	0.1169	FALSE	416	2512	207	587	0	FALSE	ACH-000282
NCIH1755_LUNG	LRBA--CYP4F59P	10	1	LRBA	2301	chr4:151935579:-	CYP4F59P	75785	chr9:43027965:-	ONLY_REF_SPLICE	YES	24	0	0.31	1	0.0974	0.0097	LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,CYP4F59P->chr9:43027748-43032877:-,cytochrome_P450_family_4_subfamily_F_member_59,_pseudogene	NCIH1755_LUNG	0.31	1	0.1071	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	4	25	MT-ND5	2795	chrM:14131:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0.2436	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	1	1	0.2826	FALSE	43	37	8	105	0	FALSE	ACH-000282
NCIH1755_LUNG	C15orf57--CBX3	8	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	17	21	0.48	0.43	0.078	0.078	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1755_LUNG	0.43	0.48	0.156	TRUE	267	562	48	632	0	FALSE	ACH-000282
NCIH1755_LUNG	EEA1--TESPA1	10	0	EEA1	3493	chr12:93285405:-	TESPA1	44781	chr12:55368391:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0974	0	EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,TESPA1->chr12:55341802-55378530:-,thymocyte_expressed,_positive_selection_associated_1	NCIH1755_LUNG	1	1	0.0974	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	MT-ND4--MT-ATP8	10	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0974	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	1	1	0.0974	FALSE	230	193	14	283	0	FALSE	ACH-000282
NCIH1755_LUNG	PYROXD1--CCDC91	2	32	PYROXD1	1200	chr12:21590748:+	CCDC91	42855	chr12:28603094:+	ONLY_REF_SPLICE	YES	27	46	0.56	0.42	0.0195	0.3118	PYROXD1->chr12:21590549-21623300:+,pyridine_nucleotide-disulphide_oxidoreductase_domain_1,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	NCIH1755_LUNG	0.42	0.56	0.3313	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	SLC12A6--GOLGA8A	10	0	SLC12A6	2651	chr15:34628611:-	GOLGA8A	31347	chr15:34846157:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0974	0	LOCAL_REARRANGEMENT:-:[41008],SLC12A6->chr15:34525460-34630261:-,solute_carrier_family_12_member_6,GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A	NCIH1755_LUNG	1	1	0.0974	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	MT-ND1--MT-TL1	9	1	MT-ND1	1053	chrM:3359:+	MT-TL1	5016	chrM:3289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0877	0.0097	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH1755_LUNG	1	1	0.0974	FALSE	210	95	5	49	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ATP6--MT-CO2	9	0	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0877	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1755_LUNG	1	1	0.0877	FALSE	59	21	0	114	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	3	24	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0.2339	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	1	1	0.2631	FALSE	43	37	8	105	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	3	24	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0.2339	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	1	1	0.2631	FALSE	43	37	8	105	0	FALSE	ACH-000282
NCIH1755_LUNG	AP003900.6--AP000345.1	8	2	AP003900.6	2187	chr21:11172043:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	5	0	0.67	1	0.078	0.0195	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1755_LUNG	0.67	1	0.0975	TRUE	1	2	0	16	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND1--MT-TL1	6	10	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0585	0.0974	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH1755_LUNG	1	1	0.1559	FALSE	210	95	5	49	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND4--MT-ATP8	8	2	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	7716	0	0	1	0.078	0.0195	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0	1	0.0975	FALSE	231	217	16	283	0	FALSE	ACH-000282
NCIH1755_LUNG	LMO4--ZNF7	7	5	LMO4	3802	chr1:87797934:+	ZNF7	21830	chr8:146062776:+	ONLY_REF_SPLICE	YES	51	56	0.19	0.18	0.0682	0.0487	LMO4->LIM_domain_only_4,chr1:87794151-87814606:+,ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7	NCIH1755_LUNG	0.18	0.19	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	3	21	MT-ND5	2749	chrM:14085:+	MT-ATP8	5896	chrM:8449:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0.2046	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	1	1	0.2338	FALSE	43	37	8	105	0	FALSE	ACH-000282
NCIH1755_LUNG	SLC12A6--GOLGA8A	8	0	SLC12A6	2651	chr15:34628611:-	GOLGA8A	41938	chr15:34699936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.078	0	LOCAL_REARRANGEMENT:-:[41008],SLC12A6->chr15:34525460-34630261:-,solute_carrier_family_12_member_6,GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A	NCIH1755_LUNG	1	1	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	FTL--MT-CO1	7	1	FTL	1134	chr19:49468691:+	MT-CO1	6232	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3635	16638	0	0	0.0682	0.0097	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1755_LUNG	0	0	0.0779	FALSE	0	7	0	14	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND4--MT-ATP8	7	1	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	8229	0	0	1	0.0682	0.0097	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0	1	0.0779	FALSE	231	217	16	283	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND4--MT-ATP8	6	5	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0585	0.0487	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	1	1	0.1072	FALSE	209	205	15	279	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND4--MT-ATP8	7	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7044	4	0	0.67	0.0682	0.0097	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0	0.67	0.0779	FALSE	231	217	16	283	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND6--MT-TE	3	17	MT-ND6	1049	chrM:14625:-	MT-TE	4522	chrM:14746:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0.1657	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1755_LUNG	1	1	0.1949	FALSE	499	1288	110	792	0	FALSE	ACH-000282
NCIH1755_LUNG	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0682	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH1755_LUNG	1	1	0.0682	TRUE	1	39	0	134	39	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	5	8	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	2	483	0.87	0.03	0.0487	0.078	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0.03	0.87	0.1267	FALSE	43	37	8	105	0	FALSE	ACH-000282
NCIH1755_LUNG	SLC1A5--MT-ND4L	7	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0682	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1755_LUNG	1	1	0.0682	FALSE	0	0	0	189	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	3	15	MT-ND5	2667	chrM:14003:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1077	0	0.02	1	0.0292	0.1462	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0.02	1	0.1754	FALSE	43	37	8	105	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	4	11	MT-ND5	2167	chrM:13503:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	2737	0	0.01	1	0.039	0.1072	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0.01	1	0.1462	FALSE	43	37	8	105	0	FALSE	ACH-000282
NCIH1755_LUNG	FAM107B--UPF2	6	2	FAM107B	1645	chr10:14816252:-	UPF2	38569	chr10:12009453:-	ONLY_REF_SPLICE	YES	0	10	1	0.44	0.0585	0.0195	FAM107B->chr10:14560556-14816896:-,family_with_sequence_similarity_107_member_B,UPF2->UPF2_regulator_of_nonsense_transcripts_homolog_(yeast),chr10:11962021-12085169:-	NCIH1755_LUNG	0.44	1	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	4	10	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	2167	0	0.01	1	0.039	0.0974	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0.01	1	0.1364	FALSE	43	37	8	105	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	3	13	MT-ND5	2583	chrM:13919:+	MT-ATP8	5869	chrM:8422:+	INCL_NON_REF_SPLICE	YES	1731	0	0.01	1	0.0292	0.1267	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0.01	1	0.1559	FALSE	43	37	8	105	0	FALSE	ACH-000282
NCIH1755_LUNG	USP7--MLKL	6	1	USP7	8404	chr16:9024150:-	MLKL	44015	chr16:74712878:-	ONLY_REF_SPLICE	YES	80	15	0.08	0.32	0.0585	0.0097	USP7->Oncogene{Bushman},chr16:8985951-9058371:-,ubiquitin_specific_peptidase_7_(herpes_virus-associated),MLKL->chr16:74705753-74734858:-,mixed_lineage_kinase_domain-like	NCIH1755_LUNG	0.08	0.32	0.0682	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	FTL--MT-CO1	6	0	FTL	1122	chr19:49468679:+	MT-CO1	6221	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0585	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1755_LUNG	1	1	0.0585	FALSE	0	7	0	14	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	3	12	MT-ND5	2243	chrM:13579:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	1736	0	0.01	1	0.0292	0.1169	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0.01	1	0.1461	FALSE	43	37	8	105	0	FALSE	ACH-000282
NCIH1755_LUNG	NRIP1--AF127936.7	5	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.39	1	0.0487	0.039	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1755_LUNG	0.39	1	0.0877	FALSE	164	806	69	479	0	FALSE	ACH-000282
NCIH1755_LUNG	RP11-634B7.4--TRIM58	6	0	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0585	0	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	NCIH1755_LUNG	1	1	0.0585	TRUE	158	633	76	73	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	3	11	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12	4	0.54	0.78	0.0292	0.1072	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0.54	0.78	0.1364	FALSE	43	37	8	105	0	FALSE	ACH-000282
NCIH1755_LUNG	AP003900.6--AP000345.1	5	2	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0487	0.0195	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1755_LUNG	1	1	0.0682	TRUE	0	8	0	37	1	FALSE	ACH-000282
NCIH1755_LUNG	MT-ATP6--MT-CO1	5	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	6936	16091	0	0	0.0487	0.0195	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1755_LUNG	0	0	0.0682	FALSE	183	104	9	328	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ATP6--MT-CO1	5	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8293	16345	0	0	0.0487	0.0195	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1755_LUNG	0	0	0.0682	FALSE	183	104	9	328	0	FALSE	ACH-000282
NCIH1755_LUNG	CTD-2337A12.1--CAST	5	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	17	1	0.26	0.0487	0.0097	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH1755_LUNG	0.26	1	0.0584	TRUE	347	1186	183	220	0	FALSE	ACH-000282
NCIH1755_LUNG	NPC2--RP11-562L8.1	5	1	NPC2	1985	chr14:74959896:-	RP11-562L8.1	11260	chr14:29850470:-	INCL_NON_REF_SPLICE	YES	117	0	0.05	1	0.0487	0.0097	NPC2->NPC_intracellular_cholesterol_transporter_2,chr14:74942895-74960880:-,RP11-562L8.1->chr14:29734031-29850501:-	NCIH1755_LUNG	0.05	1	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	RP11-155G15.2--RP11-1E3.1	5	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0487	0.0097	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH1755_LUNG	1	1	0.0584	FALSE	46	201	11	112	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	4	4	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	1584	1023	0.01	0.01	0.039	0.039	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0.01	0.01	0.078	FALSE	43	37	8	105	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1755_LUNG	1	1	0.0487	FALSE	499	1288	110	792	0	FALSE	ACH-000282
NCIH1755_LUNG	MYH9--EPS8	4	4	MYH9	27169	chr22:36694965:-	EPS8	53779	chr12:15835906:-	ONLY_REF_SPLICE	YES	583	59	0.01	0.12	0.039	0.039	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8	NCIH1755_LUNG	0.01	0.12	0.078	FALSE	0	0	0	1	0	FALSE	ACH-000282
NCIH1755_LUNG	DSCR4--KCNJ6	4	3	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.039	0.0292	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	NCIH1755_LUNG	0.64	1	0.0682	FALSE	0	24	0	27	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	3	7	MT-ND5	2047	chrM:13383:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	3142	0	0	1	0.0292	0.0682	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0	1	0.0974	FALSE	43	37	8	105	0	FALSE	ACH-000282
NCIH1755_LUNG	VIM-AS1--FTL	4	3	VIM-AS1	1589	chr10:17271396:-	FTL	9803	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	1471	0	0	1	0.039	0.0292	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	NCIH1755_LUNG	0	1	0.0682	FALSE	0	0	0	5	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ATP6--MT-CO1	4	2	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	6941	16345	0	0	0.039	0.0195	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1755_LUNG	0	0	0.0585	FALSE	183	104	9	328	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2630	45	0	0.12	0.039	0.0195	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0	0.12	0.0585	FALSE	218	210	16	281	0	FALSE	ACH-000282
NCIH1755_LUNG	RP11-120D5.1--MID1	4	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	30	0.86	0.17	0.039	0.0195	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1755_LUNG	0.17	0.86	0.0585	FALSE	16	356	14	466	0	FALSE	ACH-000282
NCIH1755_LUNG	ATP5G2--RP11-230G5.2	4	1	ATP5G2	6916	chr12:54062932:-	RP11-230G5.2	18981	chr12:65963828:-	ONLY_REF_SPLICE	YES	512	0	0.01	1	0.039	0.0097	ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-,RP11-230G5.2->chr12:65860600-66036152:-	NCIH1755_LUNG	0.01	1	0.0487	FALSE	0	0	0	1	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ATP6--MT-CO2	3	5	MT-ATP6	1471	chrM:8997:+	MT-CO2	4859	chrM:7763:+	INCL_NON_REF_SPLICE	NO	7	3	0.53	0.73	0.0292	0.0487	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1755_LUNG	0.53	0.73	0.0779	FALSE	59	21	0	114	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	4	1	MT-ND5	1256	chrM:12592:+	MT-ATP8	5844	chrM:8397:+	INCL_NON_REF_SPLICE	YES	3798	0	0	1	0.039	0.0097	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0	1	0.0487	FALSE	42	35	7	104	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ATP6--MT-CO2	4	0	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1755_LUNG	1	1	0.039	FALSE	59	21	0	114	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ATP6--MT-CO2	3	4	MT-ATP6	1223	chrM:8749:+	MT-CO2	4767	chrM:7671:+	INCL_NON_REF_SPLICE	YES	71	0	0.09	1	0.0292	0.039	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1755_LUNG	0.09	1	0.0682	FALSE	59	21	0	114	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND1--MT-TL1	4	0	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH1755_LUNG	1	1	0.039	FALSE	210	95	5	49	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	1	1	0.039	FALSE	231	205	14	283	0	FALSE	ACH-000282
NCIH1755_LUNG	PKD1L2--CNTNAP4	4	0	PKD1L2	45304	chr16:81161366:-	CNTNAP4	62947	chr16:76350310:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	PKD1L2->chr16:81134480-81253975:-,polycystin_1_like_2_(gene/pseudogene),CNTNAP4->chr16:76311176-76593135:+,contactin_associated_protein_like_4	NCIH1755_LUNG	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	MT-ATP6--MT-CO1	3	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	8293	0	0	1	0.0292	0.0292	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1755_LUNG	0	1	0.0584	FALSE	182	97	9	327	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1121	chrM:8647:+	MT-CO1	4698	chrM:5920:+	INCL_NON_REF_SPLICE	YES	6805	0	0	1	0.0292	0.0195	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1755_LUNG	0	1	0.0487	FALSE	182	97	9	327	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	7224	747	0	0.01	0.0292	0.0097	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0	0.01	0.0389	FALSE	231	217	16	283	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6609	45	0	0.08	0.0292	0.0097	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0	0.08	0.0389	FALSE	231	217	16	283	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	6940	1382	0	0	0.0292	0.0097	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0	0	0.0389	FALSE	231	217	16	283	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	8096	0	0	1	0.0292	0.0097	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0	1	0.0389	FALSE	231	217	16	283	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	6609	1680	0	0	0.0292	0.0097	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0	0	0.0389	FALSE	231	217	16	283	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	6635	0	0	1	0.0292	0.0097	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0	1	0.0389	FALSE	231	217	16	283	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	7047	0	0	1	0.0292	0.0097	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0	1	0.0389	FALSE	231	217	16	283	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND5--MT-ATP8	3	1	MT-ND5	1577	chrM:12913:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1921	0	0	1	0.0292	0.0097	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	0	1	0.0389	FALSE	42	36	7	104	0	FALSE	ACH-000282
NCIH1755_LUNG	CTC-786C10.1--RP11-166B2.1	3	0	CTC-786C10.1	1532	chr16:85205413:+	RP11-166B2.1	14004	chr16:12023302:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	CTC-786C10.1->chr16:85204882-85218969:+,RP11-166B2.1->chr16:12021230-12070500:-	NCIH1755_LUNG	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	MT-ATP6--MT-CO2	3	0	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1755_LUNG	1	1	0.0292	FALSE	59	21	0	114	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1755_LUNG	1	1	0.0292	FALSE	230	193	14	283	0	FALSE	ACH-000282
NCIH1755_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1755_LUNG	1	1	0.0292	FALSE	499	1288	110	792	0	FALSE	ACH-000282
NCIH1755_LUNG	NPM1P24--SET	3	0	NPM1P24	1533	chr10:74677760:-	SET	12301	chr9:131456196:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1755_LUNG	1	1	0.0292	TRUE	0	0	0	434	0	FALSE	ACH-000282
NCIH1755_LUNG	PRR16--CTD-2334D19.1	3	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH1755_LUNG	1	1	0.0292	FALSE	56	216	12	147	0	FALSE	ACH-000282
NCIH1755_LUNG	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH1755_LUNG	1	1	0.0292	TRUE	22	156	2	142	0	FALSE	ACH-000282
NCIH1755_LUNG	RP11-1L12.3--SLC5A12	3	0	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	NCIH1755_LUNG	1	1	0.0292	TRUE	3	101	0	60	0	FALSE	ACH-000282
NCIH1755_LUNG	PTK2--RP11-809O17.1	1	7	PTK2	3651	chr8:141993941:-	RP11-809O17.1	67687	chr8:142136570:-	ONLY_REF_SPLICE	YES	135	2	0.06	0.8	0.0097	0.0682	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,RP11-809O17.1->chr8:142136143-142140060:-	NCIH1755_LUNG	0.06	0.8	0.0779	TRUE	0	1	0	1	1	TRUE	ACH-000282
NCIH1755_LUNG	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0195	0.0195	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1755_LUNG	0.18	1	0.039	FALSE	125	705	46	456	0	FALSE	ACH-000282
NCIH1755_LUNG	RP11-108K3.1--GLDN	2	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0195	0.0097	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH1755_LUNG	1	1	0.0292	FALSE	0	30	1	55	0	FALSE	ACH-000282
NCIH1755_LUNG	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	1346	chr4:98554629:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0.0097	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH1755_LUNG	1	1	0.0292	TRUE	0	6	0	6	6	TRUE	ACH-000282
NCIH1755_LUNG	FBXO34--CTD-3006G17.2	2	0	FBXO34	1235	chr14:55738255:+	CTD-3006G17.2	20214	chr14:27729088:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,CTD-3006G17.2->chr14:27727923-28314492:-	NCIH1755_LUNG	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	HECW1--BIRC6	2	0	HECW1	9383	chr7:43360341:+	BIRC6	120692	chr2:32800223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	HECW1->HECT,_C2_and_WW_domain_containing_E3_ubiquitin_protein_ligase_1,chr7:43152198-43605600:+,BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+	NCIH1755_LUNG	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	HS2ST1--SEP15	2	0	HS2ST1	1513	chr1:87380843:+	SEP15	26013	chr1:87369131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	NCIH1755_LUNG	1	1	0.0195	TRUE	0	2	0	9	0	TRUE	ACH-000282
NCIH1755_LUNG	LINC01014--KCNMB2	2	0	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH1755_LUNG	1	1	0.0195	FALSE	11	60	26	37	0	FALSE	ACH-000282
NCIH1755_LUNG	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1755_LUNG	1	1	0.0195	FALSE	7	44	2	41	0	FALSE	ACH-000282
NCIH1755_LUNG	PHF20--ATP11A	2	0	PHF20	4583	chr20:34389527:+	ATP11A	58533	chr13:113508593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+	NCIH1755_LUNG	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	PROSC--CHMP1A	2	0	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH1755_LUNG	1	1	0.0195	TRUE	13	55	3	29	0	FALSE	ACH-000282
NCIH1755_LUNG	PTBP3--PTGR1	2	0	PTBP3	1198	chr9:115095750:-	PTGR1	31030	chr9:114348445:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	NCIH1755_LUNG	1	1	0.0195	TRUE	0	0	0	3	0	TRUE	ACH-000282
NCIH1755_LUNG	RP11-435B5.4--TMED2	2	0	RP11-435B5.4	2843	chr1:143465380:-	TMED2	21814	chr12:124071294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	RP11-435B5.4->chr1:143354963-143467632:-,TMED2->chr12:124069078-124083116:+,transmembrane_p24_trafficking_protein_2	NCIH1755_LUNG	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	SERPINB6--THOC2	2	0	SERPINB6	5681	chr6:2959402:-	THOC2	23118	chrX:122802165:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	SERPINB6->chr6:2948393-2972090:-,serpin_family_B_member_6,THOC2->THO_complex_2,chrX:122734412-122866906:-	NCIH1755_LUNG	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	WAC--RAB18	2	0	WAC	4265	chr10:28824686:+	RAB18	32254	chr10:27815757:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	GTEx&tcga_normals:1/3694=0.03%,WAC->WW_domain_containing_adaptor_with_coiled-coil,chr10:28821422-28912041:+,RAB18->RAB18,_member_RAS_oncogene_family,chr10:27793197-27831143:+	NCIH1755_LUNG	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000282
NCIH1755_LUNG	ATP5G2--RP11-230G5.2	1	1	ATP5G2	6916	chr12:54062932:-	RP11-230G5.2	18961	chr12:65963848:-	ONLY_REF_SPLICE	YES	512	0	0	1	0.0097	0.0097	ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-,RP11-230G5.2->chr12:65860600-66036152:-	NCIH1755_LUNG	0	1	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000282
NCIH1755_LUNG	FGF14-IT1--FGF14	1	1	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0097	0.0097	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	NCIH1755_LUNG	0.67	1	0.0194	TRUE	71	201	23	28	0	FALSE	ACH-000282
NCIH1755_LUNG	PYROXD1--CCDC91	1	1	PYROXD1	3005	chr12:21593382:+	CCDC91	45290	chr12:28636985:+	ONLY_REF_SPLICE	YES	37	85	0.05	0.02	0.0097	0.0097	PYROXD1->chr12:21590549-21623300:+,pyridine_nucleotide-disulphide_oxidoreductase_domain_1,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	NCIH1755_LUNG	0.02	0.05	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000282
NCIH1755_LUNG	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0097	0.0097	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1755_LUNG	0.67	1	0.0194	FALSE	93	270	15	244	0	FALSE	ACH-000282
NCIH1755_LUNG	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	22333	chr4:98480268:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0097	0.0097	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH1755_LUNG	1	1	0.0194	TRUE	0	6	0	7	6	TRUE	ACH-000282
NCIH1755_LUNG	SEC31A--LIN54	1	1	SEC31A	31111	chr4:83763293:-	LIN54	47664	chr4:83891622:-	ONLY_REF_SPLICE	NO	163	27	0.01	0.07	0.0097	0.0097	LOCAL_REARRANGEMENT:-:[8807],SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-,LIN54->chr4:83831126-83934079:-,lin-54_DREAM_MuvB_core_complex_component	NCIH1755_LUNG	0.01	0.07	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000282
NCIH1755_LUNG	TBCD--FN3KRP	1	1	TBCD	20005	chr17:80842078:+	FN3KRP	63227	chr17:80687200:+	ONLY_REF_SPLICE	YES	74	4	0.03	0.33	0.0097	0.0097	LOCAL_REARRANGEMENT:+:[21736],TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D,FN3KRP->chr17:80674559-80688204:+,fructosamine_3_kinase_related_protein	NCIH1755_LUNG	0.03	0.33	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000282
HS698T_FIBROBLAST	FN1--COL1A1	292	5	FN1	36954	chr2:216243980:-	COL1A1	69586	chr17:48264124:-	INCL_NON_REF_SPLICE	YES	10999	8416	0.03	0.03	3.8768	0.0664	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS698T_FIBROBLAST	0.03	0.03	3.9432	TRUE	0	0	0	13	0	FALSE	ACH-000850
HS698T_FIBROBLAST	OR51S1--TP53I11	105	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3941	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HS698T_FIBROBLAST	1	1	1.3941	TRUE	402	216	10	229	0	FALSE	ACH-000850
HS698T_FIBROBLAST	TIMM23B--LINC00843	97	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2878	0.3186	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS698T_FIBROBLAST	1	1	1.6064	TRUE	508	994	45	981	0	FALSE	ACH-000850
HS698T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	71	58	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	0	13	1	0.91	0.9427	0.7701	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS698T_FIBROBLAST	0.91	1	1.7128	FALSE	65	26	15	9	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-TA--MT-TN	79	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0489	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS698T_FIBROBLAST	1	1	1.0489	FALSE	369	2501	205	193	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL3A1--COL4A1	76	7	COL3A1	24834	chr2:189872851:+	COL4A1	37977	chr13:110862510:-	INCL_NON_REF_SPLICE	YES	3907	1009	0.02	0.08	1.009	0.0929	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS698T_FIBROBLAST	0.02	0.08	1.1019	TRUE	0	0	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--MT-TE	61	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.8099	0.0531	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS698T_FIBROBLAST	0.98	1	0.863	FALSE	499	1288	110	792	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL3A1--COL4A1	61	1	COL3A1	10661	chr2:189858177:+	COL4A1	43322	chr13:110855935:-	INCL_NON_REF_SPLICE	NO	3065	971	0.02	0.06	0.8099	0.0133	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS698T_FIBROBLAST	0.02	0.06	0.8232	TRUE	0	0	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	47	54	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	0	14	1	0.88	0.624	0.7169	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS698T_FIBROBLAST	0.88	1	1.3409	FALSE	65	26	15	9	0	FALSE	ACH-000850
HS698T_FIBROBLAST	TIMM23--RP11-464F9.1	53	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	138	1	0.29	0.98	0.7037	0.0398	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS698T_FIBROBLAST	0.29	0.98	0.7435	TRUE	519	3926	326	965	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--MT-ND5	40	9	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	3682	1	0.01	0.5311	0.1195	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS698T_FIBROBLAST	0.01	1	0.6506	FALSE	101	855	57	72	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--MT-TE	34	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.4514	0.0664	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS698T_FIBROBLAST	0.97	1	0.5178	FALSE	499	1288	110	792	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL1A2--COL4A2	30	5	COL1A2	26236	chr7:94053755:+	COL4A2	44173	chr13:111082748:+	ONLY_REF_SPLICE	NO	8138	952	0	0.04	0.3983	0.0664	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS698T_FIBROBLAST	0	0.04	0.4647	TRUE	0	0	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--MT-TE	24	25	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.3186	0.3319	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS698T_FIBROBLAST	0.94	1	0.6505	FALSE	499	1288	110	792	0	FALSE	ACH-000850
HS698T_FIBROBLAST	KANSL1--ARL17B	20	4	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	27	23	0.47	0.51	0.2655	0.0531	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HS698T_FIBROBLAST	0.47	0.51	0.3186	TRUE	181	1564	124	196	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-TA--MT-TC	19	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2523	0.0398	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS698T_FIBROBLAST	1	1	0.2921	FALSE	462	80	0	856	0	FALSE	ACH-000850
HS698T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	4	61	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	14416	chr11:121987031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0531	0.8099	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS698T_FIBROBLAST	1	1	0.863	FALSE	8	1	0	5	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL1A2--COL4A2	18	1	COL1A2	8773	chr7:94035615:+	COL4A2	44173	chr13:111082748:+	ONLY_REF_SPLICE	NO	4556	952	0	0.02	0.239	0.0133	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS698T_FIBROBLAST	0	0.02	0.2523	TRUE	0	0	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	12	23	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	1	13	0.97	0.73	0.1593	0.3054	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS698T_FIBROBLAST	0.73	0.97	0.4647	FALSE	40	10	5	8	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-TA--MT-TN	9	33	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1195	0.4381	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS698T_FIBROBLAST	1	1	0.5576	FALSE	369	2501	205	193	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL1A2--COL4A2	15	5	COL1A2	18296	chr7:94045815:+	COL4A2	44173	chr13:111082748:+	ONLY_REF_SPLICE	YES	6522	952	0	0.02	0.1992	0.0664	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS698T_FIBROBLAST	0	0.02	0.2656	TRUE	0	0	0	2	0	FALSE	ACH-000850
HS698T_FIBROBLAST	PRR16--CTD-2334D19.1	14	6	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	28	0	0.42	1	0.1859	0.0797	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS698T_FIBROBLAST	0.42	1	0.2656	FALSE	21	45	1	60	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND4--MT-ATP8	13	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	7990	2	0	0.88	0.1726	0.0133	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS698T_FIBROBLAST	0	0.88	0.1859	FALSE	230	193	14	283	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--MT-TE	4	36	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.0531	0.478	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS698T_FIBROBLAST	0.93	1	0.5311	FALSE	499	1288	110	792	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--MT-TE	6	25	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0797	0.3319	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS698T_FIBROBLAST	0.91	1	0.4116	FALSE	499	1288	110	792	0	FALSE	ACH-000850
HS698T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	7	21	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	1	14	0.97	0.67	0.0929	0.2788	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS698T_FIBROBLAST	0.67	0.97	0.3717	FALSE	40	10	5	8	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-TA--MT-TN	8	16	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1062	0.2124	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS698T_FIBROBLAST	1	1	0.3186	FALSE	369	2501	205	193	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--MT-TE	3	33	MT-ND6	1196	chrM:14478:-	MT-TE	4557	chrM:14711:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0398	0.4381	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS698T_FIBROBLAST	0.92	1	0.4779	FALSE	499	1288	110	792	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--MT-TE	3	33	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0398	0.4381	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS698T_FIBROBLAST	0.92	1	0.4779	FALSE	499	1288	110	792	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-TA--MT-TN	7	17	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0929	0.2257	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS698T_FIBROBLAST	1	1	0.3186	FALSE	369	2501	205	193	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-TA--MT-TN	3	32	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0.4249	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS698T_FIBROBLAST	1	1	0.4647	FALSE	369	2501	205	193	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND5--MT-ND6	10	3	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	4672	1	0	0.1328	0.0398	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HS698T_FIBROBLAST	0	1	0.1726	FALSE	26	124	4	93	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--MT-TE	6	18	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0797	0.239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS698T_FIBROBLAST	0.96	1	0.3187	FALSE	499	1288	110	792	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--MT-ND5	8	9	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	3552	1	0	0.1062	0.1195	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS698T_FIBROBLAST	0	1	0.2257	FALSE	101	855	57	72	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL3A1--COL4A1	9	3	COL3A1	19718	chr2:189867735:+	COL4A1	41091	chr13:110859037:-	INCL_NON_REF_SPLICE	YES	3505	857	0	0.01	0.1195	0.0398	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS698T_FIBROBLAST	0	0.01	0.1593	TRUE	0	0	0	2	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL1A1--COL7A1	9	1	COL1A1	12984	chr17:48266791:-	COL7A1	44371	chr3:48610162:-	INCL_NON_REF_SPLICE	YES	9563	20	0	0.33	0.1195	0.0133	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	HS698T_FIBROBLAST	0	0.33	0.1328	TRUE	0	0	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	GTF2A2--ANXA2	9	0	GTF2A2	1136	chr15:59949605:-	ANXA2	22041	chr15:60678285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1195	0	GTF2A2->chr15:59930261-59949740:-,general_transcription_factor_IIA_subunit_2,ANXA2->annexin_A2,chr15:60639333-60695082:-	HS698T_FIBROBLAST	1	1	0.1195	TRUE	0	0	0	1	0	TRUE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--MT-TE	9	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1195	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS698T_FIBROBLAST	1	1	0.1195	FALSE	499	1288	110	792	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--MT-TE	4	18	MT-ND6	1149	chrM:14525:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.0531	0.239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS698T_FIBROBLAST	0.85	1	0.2921	FALSE	499	1288	110	792	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL1A1--COL7A1	8	1	COL1A1	13020	chr17:48266755:-	COL7A1	43229	chr3:48611304:-	INCL_NON_REF_SPLICE	NO	9636	38	0	0.19	0.1062	0.0133	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	HS698T_FIBROBLAST	0	0.19	0.1195	FALSE	0	1	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL3A1--COL4A1	7	3	COL3A1	16513	chr2:189864029:+	COL4A1	56158	chr13:110831383:-	INCL_NON_REF_SPLICE	YES	3213	961	0	0.01	0.0929	0.0398	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS698T_FIBROBLAST	0	0.01	0.1327	TRUE	0	0	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	PRR16--CTD-2334D19.1	7	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	79	0	0.11	1	0.0929	0.0398	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS698T_FIBROBLAST	0.11	1	0.1327	FALSE	56	216	12	147	0	FALSE	ACH-000850
HS698T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	7	2	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	26134	chr11:121937142:-	ONLY_REF_SPLICE	YES	0	2	1	0.82	0.0929	0.0266	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS698T_FIBROBLAST	0.82	1	0.1195	FALSE	17	5	3	5	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL1A1--TIMP1	3	16	COL1A1	16855	chr17:48262920:-	TIMP1	23244	chrX:47442830:+	INCL_NON_REF_SPLICE	NO	4644	261	0	0.07	0.0398	0.2124	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,TIMP1->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_1,chrX:47441712-47446188:+	HS698T_FIBROBLAST	0	0.07	0.2522	FALSE	0	0	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--MT-ND5	7	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0929	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS698T_FIBROBLAST	1	1	0.0929	FALSE	101	855	57	72	0	FALSE	ACH-000850
HS698T_FIBROBLAST	FN1--S100A6	6	3	FN1	12522	chr2:216285405:-	S100A6	55189	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	9455	2	0	0.82	0.0797	0.0398	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HS698T_FIBROBLAST	0	0.82	0.1195	TRUE	0	0	0	7	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND4--MT-ATP8	6	2	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2145	51	0	0.14	0.0797	0.0266	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS698T_FIBROBLAST	0	0.14	0.1063	FALSE	216	209	16	281	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MYL9--MT-CO3	6	1	MYL9	4926	chr20:35178072:+	MT-CO3	8144	chrM:9268:+	INCL_NON_REF_SPLICE	YES	567	1	0.01	0.88	0.0797	0.0133	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HS698T_FIBROBLAST	0.01	0.88	0.093	FALSE	29	0	0	10	0	FALSE	ACH-000850
HS698T_FIBROBLAST	IGFBP7--MT-ND4L	6	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0797	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS698T_FIBROBLAST	1	1	0.0797	FALSE	1	0	0	30	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-TA--MT-TN	6	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0797	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS698T_FIBROBLAST	1	1	0.0797	FALSE	369	2501	205	193	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL3A1--COL4A1	5	3	COL3A1	16770	chr2:189864286:+	COL4A1	39275	chr13:110861212:-	INCL_NON_REF_SPLICE	YES	3194	759	0	0.01	0.0664	0.0398	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS698T_FIBROBLAST	0	0.01	0.1062	TRUE	0	0	0	2	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND4--MT-ATP8	5	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11033	4	0	0.64	0.0664	0.0266	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS698T_FIBROBLAST	0	0.64	0.093	FALSE	231	217	16	283	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--COL1A2	5	2	MT-ND6	1297	chrM:14377:-	COL1A2	29745	chr7:94053739:+	INCL_NON_REF_SPLICE	YES	5220	7775	0	0	0.0664	0.0266	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS698T_FIBROBLAST	0	0	0.093	FALSE	0	1	0	7	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--MT-ND5	4	6	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	3	1969	0.77	0.01	0.0531	0.0797	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS698T_FIBROBLAST	0.01	0.77	0.1328	FALSE	101	855	57	72	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-TA--MT-TC	5	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0.0266	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS698T_FIBROBLAST	1	1	0.093	FALSE	462	80	0	856	0	FALSE	ACH-000850
HS698T_FIBROBLAST	NRIP1--AF127936.7	5	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.5	1	0.0664	0.0133	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS698T_FIBROBLAST	0.5	1	0.0797	FALSE	164	806	69	479	0	FALSE	ACH-000850
HS698T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	5	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0664	0.0133	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS698T_FIBROBLAST	0.86	1	0.0797	FALSE	515	4851	409	746	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-TA--MT-TC	4	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0.0531	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS698T_FIBROBLAST	1	1	0.1062	FALSE	462	80	0	856	0	FALSE	ACH-000850
HS698T_FIBROBLAST	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0664	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS698T_FIBROBLAST	1	1	0.0664	FALSE	292	1546	117	613	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND4--MT-ATP8	4	2	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	11795	725	0	0.01	0.0531	0.0266	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS698T_FIBROBLAST	0	0.01	0.0797	FALSE	231	217	16	283	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND4--MT-ATP8	4	2	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	11078	0	0	1	0.0531	0.0266	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS698T_FIBROBLAST	0	1	0.0797	FALSE	231	217	16	283	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--COL1A2	4	2	MT-ND6	1304	chrM:14370:-	COL1A2	30488	chr7:94054482:+	INCL_NON_REF_SPLICE	YES	5159	7685	0	0	0.0531	0.0266	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS698T_FIBROBLAST	0	0	0.0797	FALSE	0	1	0	7	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL1A1--COL7A1	4	1	COL1A1	15399	chr17:48264376:-	COL7A1	35761	chr3:48619065:-	ONLY_REF_SPLICE	NO	9796	31	0	0.14	0.0531	0.0133	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	HS698T_FIBROBLAST	0	0.14	0.0664	FALSE	0	0	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	CTD-2337A12.1--CAST	4	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	39	1	0.11	0.0531	0.0133	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS698T_FIBROBLAST	0.11	1	0.0664	TRUE	347	1186	183	220	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--MT-ND5	3	5	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	1	730	0.89	0.01	0.0398	0.0664	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS698T_FIBROBLAST	0.01	0.89	0.1062	FALSE	101	855	57	72	0	FALSE	ACH-000850
HS698T_FIBROBLAST	RP11-155G15.2--RP11-1E3.1	4	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0531	0.0133	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HS698T_FIBROBLAST	1	1	0.0664	FALSE	46	201	11	112	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL1A1--COL7A1	4	0	COL1A1	5797	chr17:48273978:-	COL7A1	37770	chr3:48617056:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	HS698T_FIBROBLAST	1	1	0.0531	TRUE	0	0	0	1	0	TRUE	ACH-000850
HS698T_FIBROBLAST	COL1A2--COL4A2	3	4	COL1A2	14601	chr7:94041986:+	COL4A2	57743	chr13:111114498:+	INCL_NON_REF_SPLICE	YES	6646	976	0	0.01	0.0398	0.0531	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS698T_FIBROBLAST	0	0.01	0.0929	FALSE	0	0	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL8A1--CMSS1	3	4	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	596	85	0.01	0.08	0.0398	0.0531	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HS698T_FIBROBLAST	0.01	0.08	0.0929	FALSE	76	19	3	26	0	FALSE	ACH-000850
HS698T_FIBROBLAST	KANSL1--ARL17B	4	0	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0531	0	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HS698T_FIBROBLAST	1	1	0.0531	TRUE	105	90	7	93	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND4--MT-ATP8	3	4	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	31	0	0.18	1	0.0398	0.0531	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS698T_FIBROBLAST	0.18	1	0.0929	FALSE	213	207	15	279	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--MT-ND5	4	0	MT-ND6	1339	chrM:14335:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS698T_FIBROBLAST	1	1	0.0531	FALSE	101	855	57	72	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS698T_FIBROBLAST	1	1	0.0531	FALSE	369	2501	205	193	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-TA--MT-TN	4	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS698T_FIBROBLAST	1	1	0.0531	FALSE	369	2501	205	193	0	FALSE	ACH-000850
HS698T_FIBROBLAST	NRIP1--AF127936.7	4	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0531	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS698T_FIBROBLAST	1	1	0.0531	FALSE	125	705	46	456	0	FALSE	ACH-000850
HS698T_FIBROBLAST	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0531	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS698T_FIBROBLAST	1	1	0.0531	TRUE	465	1949	224	605	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10899	51	0	0.09	0.0398	0.0266	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS698T_FIBROBLAST	0	0.09	0.0664	FALSE	231	217	16	283	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1477	chrM:11236:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	NO	11078	0	0	1	0.0398	0.0266	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS698T_FIBROBLAST	0	1	0.0664	FALSE	231	217	16	283	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND4--MT-ATP8	3	2	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11113	51	0	0.09	0.0398	0.0266	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS698T_FIBROBLAST	0	0.09	0.0664	FALSE	231	217	16	283	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	10625	0	0	1	0.0398	0.0266	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS698T_FIBROBLAST	0	1	0.0664	FALSE	231	217	16	283	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11367	51	0	0.09	0.0398	0.0266	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS698T_FIBROBLAST	0	0.09	0.0664	FALSE	231	217	16	283	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL1A1--COL7A1	3	1	COL1A1	13793	chr17:48265982:-	COL7A1	37058	chr3:48617768:-	INCL_NON_REF_SPLICE	YES	8210	27	0	0.13	0.0398	0.0133	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	HS698T_FIBROBLAST	0	0.13	0.0531	FALSE	0	0	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL3A1--COL4A1	3	1	COL3A1	8250	chr2:189855766:+	COL4A1	43322	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	2923	971	0	0	0.0398	0.0133	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS698T_FIBROBLAST	0	0	0.0531	FALSE	0	0	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	FN1--COL1A1	3	1	FN1	44260	chr2:216235029:-	COL1A1	70023	chr17:48263687:-	INCL_NON_REF_SPLICE	YES	12183	8883	0	0	0.0398	0.0133	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS698T_FIBROBLAST	0	0	0.0531	FALSE	0	0	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND4--MT-ATP8	3	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7956	4	0	0.5	0.0398	0.0133	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS698T_FIBROBLAST	0	0.5	0.0531	FALSE	230	198	14	283	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND5--MT-ND6	3	1	MT-ND5	2812	chrM:14148:+	MT-ND6	6227	chrM:14259:-	INCL_NON_REF_SPLICE	YES	0	3634	1	0	0.0398	0.0133	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HS698T_FIBROBLAST	0	1	0.0531	FALSE	26	124	4	93	0	FALSE	ACH-000850
HS698T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	3	1	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	26134	chr11:121937142:-	ONLY_REF_SPLICE	YES	1	2	0.8	0.67	0.0398	0.0133	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS698T_FIBROBLAST	0.67	0.8	0.0531	FALSE	10	1	1	4	0	FALSE	ACH-000850
HS698T_FIBROBLAST	SERPINE1--MT-ND4	3	1	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	4303	10926	0	0	0.0398	0.0133	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HS698T_FIBROBLAST	0	0	0.0531	FALSE	1	0	0	29	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL1A1--COL7A1	3	0	COL1A1	10573	chr17:48269202:-	COL7A1	33641	chr3:48621185:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	HS698T_FIBROBLAST	1	1	0.0398	TRUE	0	0	0	1	0	TRUE	ACH-000850
HS698T_FIBROBLAST	MT-CO1--MT-ND1	3	0	MT-CO1	1699	chrM:6602:+	MT-ND1	6056	chrM:3820:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HS698T_FIBROBLAST	1	1	0.0398	FALSE	39	30	6	19	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-CO1--MT-ND1	3	0	MT-CO1	1761	chrM:6664:+	MT-ND1	6404	chrM:4168:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HS698T_FIBROBLAST	1	1	0.0398	FALSE	39	30	6	19	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1062	chrM:10821:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS698T_FIBROBLAST	1	1	0.0398	FALSE	230	192	14	283	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS698T_FIBROBLAST	1	1	0.0398	FALSE	499	1288	110	792	0	FALSE	ACH-000850
HS698T_FIBROBLAST	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS698T_FIBROBLAST	1	1	0.0398	FALSE	462	80	0	856	0	FALSE	ACH-000850
HS698T_FIBROBLAST	PEAK1--UBE2Q2	3	0	PEAK1	1139	chr15:77712348:-	UBE2Q2	41669	chr15:76175707:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0398	0	PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1,UBE2Q2->chr15:76135622-76193419:+,ubiquitin_conjugating_enzyme_E2_Q2	HS698T_FIBROBLAST	1	1	0.0398	TRUE	0	0	0	1	0	TRUE	ACH-000850
HS698T_FIBROBLAST	COL8A1--CMSS1	2	3	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	709	85	0.01	0.06	0.0266	0.0398	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HS698T_FIBROBLAST	0.01	0.06	0.0664	FALSE	38	10	2	29	0	FALSE	ACH-000850
HS698T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0266	0.0266	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS698T_FIBROBLAST	1	1	0.0532	FALSE	407	2205	196	549	0	FALSE	ACH-000850
HS698T_FIBROBLAST	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0266	0.0133	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS698T_FIBROBLAST	0.75	1	0.0399	TRUE	458	1351	185	561	0	FALSE	ACH-000850
HS698T_FIBROBLAST	CDH13--RP11-22H5.2	2	0	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	HS698T_FIBROBLAST	1	1	0.0266	FALSE	14	31	0	36	0	FALSE	ACH-000850
HS698T_FIBROBLAST	COL3A1--COL4A1	1	4	COL3A1	20173	chr2:189868190:+	COL4A1	40890	chr13:110859238:-	ONLY_REF_SPLICE	NO	5325	731	0	0.01	0.0133	0.0531	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS698T_FIBROBLAST	0	0.01	0.0664	FALSE	0	0	0	2	0	FALSE	ACH-000850
HS698T_FIBROBLAST	GPR39--NCKAP5	2	0	GPR39	2325	chr2:133175471:+	NCKAP5	39094	chr2:133430878:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	LOCAL_INVERSION:+:-:[25242],GPR39->G_protein-coupled_receptor_39,chr2:133174147-133404132:+,NCKAP5->NCK_associated_protein_5,chr2:133429374-134326034:-	HS698T_FIBROBLAST	1	1	0.0266	TRUE	0	0	0	2	0	TRUE	ACH-000850
HS698T_FIBROBLAST	NCAM2--CCDC14	2	0	NCAM2	1304	chr21:22370936:+	CCDC14	45056	chr3:123667979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	NCAM2->chr21:22370633-22915650:+,neural_cell_adhesion_molecule_2,CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14	HS698T_FIBROBLAST	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000850
HS698T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	2	0	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	28009	chr11:121899553:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS698T_FIBROBLAST	1	1	0.0266	FALSE	2	0	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	RP3-510D11.1--DEF8	2	0	RP3-510D11.1	3450	chr1:9242066:-	DEF8	11051	chr16:90020651:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	RP3-510D11.1->chr1:9242066-9262678:-,DEF8->chr16:90014333-90034468:+,differentially_expressed_in_FDCP_8_homolog_(mouse)	HS698T_FIBROBLAST	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000850
HS698T_FIBROBLAST	COL8A1--CMSS1	1	2	COL8A1	12080	chr3:99463865:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	NO	781	85	0	0.03	0.0133	0.0266	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HS698T_FIBROBLAST	0	0.03	0.0399	FALSE	4	4	0	17	0	FALSE	ACH-000850
HS698T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	1	2	RP11-820L6.1	2658	chr11:122238204:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	NO	20	14	0.13	0.18	0.0133	0.0266	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS698T_FIBROBLAST	0.13	0.18	0.0399	FALSE	1	2	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0133	0.0266	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS698T_FIBROBLAST	1	1	0.0399	FALSE	192	492	57	212	0	FALSE	ACH-000850
HS698T_FIBROBLAST	CEP85L--MAN2A1	1	1	CEP85L	12959	chr6:118844965:-	MAN2A1	47172	chr5:109152974:+	ONLY_REF_SPLICE	YES	1	98	0.67	0.02	0.0133	0.0133	CEP85L->centrosomal_protein_85_like,chr6:118781935-119031238:-,MAN2A1->chr5:109025067-109205326:+,mannosidase_alpha_class_2A_member_1	HS698T_FIBROBLAST	0.02	0.67	0.0266	TRUE	0	0	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	CTNNB1--ULK4	1	1	CTNNB1	3896	chr3:41241161:+	ULK4	46934	chr3:41877463:-	ONLY_REF_SPLICE	YES	327	0	0.01	1	0.0133	0.0133	GTEx_v2:{count=8;pct=0.09%;dist=Heart_-_Atrial_Appendage=2,Lung=1,Prostate=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Colon_-_Transverse=1},NEIGHBORS_OVERLAP:+:-:[13497],CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	HS698T_FIBROBLAST	0.01	1	0.0266	FALSE	0	1	0	3	0	FALSE	ACH-000850
HS698T_FIBROBLAST	FBN1--LTBP2	1	1	FBN1	58274	chr15:48722868:-	LTBP2	95367	chr14:74976916:-	ONLY_REF_SPLICE	YES	1626	480	0	0	0.0133	0.0133	PROTCLUST,FBN1->chr15:48700503-48938046:-,fibrillin_1,LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2	HS698T_FIBROBLAST	0	0	0.0266	FALSE	0	0	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	LRRFIP1--RAMP1	1	1	LRRFIP1	5699	chr2:238617273:+	RAMP1	47135	chr2:238820170:+	ONLY_REF_SPLICE	YES	106	15	0.02	0.12	0.0133	0.0133	NEIGHBORS[45211],LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,RAMP1->Oncogene{Bushman},chr2:238767536-238820756:+,receptor_activity_modifying_protein_1	HS698T_FIBROBLAST	0.02	0.12	0.0266	FALSE	0	0	0	1	0	FALSE	ACH-000850
HS698T_FIBROBLAST	TTC12--CHMP1A	1	1	TTC12	8631	chr11:113205759:+	CHMP1A	35836	chr16:89713739:-	ONLY_REF_SPLICE	NO	18	166	0.1	0.01	0.0133	0.0133	{Klijn_CCL:Brain=1},TTC12->chr11:113185251-113254266:+,tetratricopeptide_repeat_domain_12,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HS698T_FIBROBLAST	0.01	0.1	0.0266	FALSE	0	3	0	2	0	FALSE	ACH-000850
LOXIMVI_SKIN	RP11-344E13.3--UBBP4	46	189	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.5305	2.1799	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	LOXIMVI_SKIN	1	1	2.7104	TRUE	23	13	0	54	0	FALSE	ACH-000750
LOXIMVI_SKIN	SLC38A2--PTMA	90	0	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.038	0	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	LOXIMVI_SKIN	1	1	1.038	TRUE	0	0	0	10	0	TRUE	ACH-000750
LOXIMVI_SKIN	TIMM23B--LINC00843	65	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7497	0.2883	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LOXIMVI_SKIN	0.99	1	1.038	TRUE	508	994	45	981	0	FALSE	ACH-000750
LOXIMVI_SKIN	AC104389.28--HBE1	47	37	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	180	2	0.32	0.98	0.5421	0.4267	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	LOXIMVI_SKIN	0.32	0.98	0.9688	TRUE	0	48	0	65	48	FALSE	ACH-000750
LOXIMVI_SKIN	TIMM23--RP11-464F9.1	40	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	342	1	0.11	0.98	0.4613	0.0346	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LOXIMVI_SKIN	0.11	0.98	0.4959	TRUE	519	3926	326	965	0	FALSE	ACH-000750
LOXIMVI_SKIN	C15orf57--CBX3	30	28	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	69	40	0.46	0.59	0.346	0.3229	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LOXIMVI_SKIN	0.46	0.59	0.6689	TRUE	267	562	48	632	0	FALSE	ACH-000750
LOXIMVI_SKIN	RP11-680G10.1--GSE1	33	12	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.82	0.3806	0.1384	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LOXIMVI_SKIN	0.82	1	0.519	TRUE	458	1351	185	561	0	FALSE	ACH-000750
LOXIMVI_SKIN	ZNF654--HMGB2	35	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4037	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LOXIMVI_SKIN	1	1	0.4037	TRUE	0	0	0	518	0	FALSE	ACH-000750
LOXIMVI_SKIN	MIPEPP3--ABHD12	21	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2422	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	LOXIMVI_SKIN	1	1	0.2422	TRUE	64	202	9	44	0	FALSE	ACH-000750
LOXIMVI_SKIN	PLXDC1--TAF13	21	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2422	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	LOXIMVI_SKIN	1	1	0.2422	TRUE	7	10	0	216	0	FALSE	ACH-000750
LOXIMVI_SKIN	AC104389.28--HBE1	9	40	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	180	0	0.21	1	0.1038	0.4613	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	LOXIMVI_SKIN	0.21	1	0.5651	TRUE	0	35	0	55	35	FALSE	ACH-000750
LOXIMVI_SKIN	RP11-680G10.1--GSE1	17	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	35	1	0.39	0.1961	0.0577	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LOXIMVI_SKIN	0.39	1	0.2538	TRUE	465	1949	224	605	0	FALSE	ACH-000750
LOXIMVI_SKIN	C15orf57--CBX3	12	22	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	66	40	0.34	0.46	0.1384	0.2537	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LOXIMVI_SKIN	0.34	0.46	0.3921	TRUE	267	562	48	632	0	FALSE	ACH-000750
LOXIMVI_SKIN	AP000525.9--LA16c-60G3.6	11	3	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	17	0	0.45	1	0.1269	0.0346	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	LOXIMVI_SKIN	0.45	1	0.1615	TRUE	0	42	0	133	42	FALSE	ACH-000750
LOXIMVI_SKIN	NRIP1--AF127936.7	10	6	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	1	0.73	0.94	0.1153	0.0692	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LOXIMVI_SKIN	0.73	0.94	0.1845	FALSE	292	1546	117	613	0	FALSE	ACH-000750
LOXIMVI_SKIN	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1269	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LOXIMVI_SKIN	1	1	0.1269	TRUE	0	0	0	434	0	FALSE	ACH-000750
LOXIMVI_SKIN	AL589743.1--RP11-536C10.17	10	3	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	17	0	0.43	1	0.1153	0.0346	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	LOXIMVI_SKIN	0.43	1	0.1499	TRUE	0	33	0	45	33	FALSE	ACH-000750
LOXIMVI_SKIN	CLTC--RPS6KB1	8	6	CLTC	1316	chr17:57697534:+	RPS6KB1	41184	chr17:57987923:+	ONLY_REF_SPLICE	YES	286	53	0.05	0.21	0.0923	0.0692	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	LOXIMVI_SKIN	0.05	0.21	0.1615	TRUE	0	1	0	5	0	TRUE	ACH-000750
LOXIMVI_SKIN	NRIP1--AF127936.7	6	10	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	45	1	0.26	0.94	0.0692	0.1153	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LOXIMVI_SKIN	0.26	0.94	0.1845	FALSE	125	705	46	456	0	FALSE	ACH-000750
LOXIMVI_SKIN	RP11-444D3.1--SOX5	7	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0807	0.0577	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LOXIMVI_SKIN	1	1	0.1384	TRUE	477	1352	189	275	0	FALSE	ACH-000750
LOXIMVI_SKIN	RP11-634B7.4--TRIM58	6	7	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0692	0.0807	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	LOXIMVI_SKIN	0.93	1	0.1499	TRUE	158	633	76	73	0	FALSE	ACH-000750
LOXIMVI_SKIN	CALM3--MT-ND4L	5	4	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1699	0	0.01	1	0.0577	0.0461	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LOXIMVI_SKIN	0.01	1	0.1038	FALSE	1	1	0	107	0	FALSE	ACH-000750
LOXIMVI_SKIN	CTD-2337A12.1--CAST	6	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0692	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	LOXIMVI_SKIN	1	1	0.0692	TRUE	347	1186	183	220	0	FALSE	ACH-000750
LOXIMVI_SKIN	EEF2--MT2A	3	12	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	3209	6	0	0.71	0.0346	0.1384	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	LOXIMVI_SKIN	0	0.71	0.173	TRUE	1	0	0	19	0	FALSE	ACH-000750
LOXIMVI_SKIN	NPM1P24--SET	5	1	NPM1P24	1533	chr10:74677760:-	SET	12301	chr9:131456196:+	INCL_NON_REF_SPLICE	NO	65	1880	0.08	0	0.0577	0.0115	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LOXIMVI_SKIN	0	0.08	0.0692	FALSE	0	0	0	434	0	FALSE	ACH-000750
LOXIMVI_SKIN	NRIP1--AF127936.7	2	12	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	44	1	0.24	0.93	0.0231	0.1384	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LOXIMVI_SKIN	0.24	0.93	0.1615	FALSE	164	806	69	479	0	FALSE	ACH-000750
LOXIMVI_SKIN	NPM1P24--SET	4	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	65	1863	0.07	0	0.0461	0.0115	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LOXIMVI_SKIN	0	0.07	0.0576	FALSE	0	0	0	434	0	FALSE	ACH-000750
LOXIMVI_SKIN	AP000525.9--LA16c-60G3.6	4	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	LOXIMVI_SKIN	1	1	0.0461	TRUE	0	5	0	18	5	TRUE	ACH-000750
LOXIMVI_SKIN	EIF1--RPS28	4	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	LOXIMVI_SKIN	1	1	0.0461	TRUE	0	0	0	81	0	FALSE	ACH-000750
LOXIMVI_SKIN	ITGB5--ZNF148	3	4	ITGB5	17016	chr3:124527869:-	ZNF148	35868	chr3:125042288:-	ONLY_REF_SPLICE	YES	136	33	0.05	0.17	0.0346	0.0461	ITGB5->chr3:124480795-124620265:-,integrin_subunit_beta_5,ZNF148->chr3:124944405-125094198:-,zinc_finger_protein_148	LOXIMVI_SKIN	0.05	0.17	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000750
LOXIMVI_SKIN	MT-ATP6--MT-CO1	4	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LOXIMVI_SKIN	1	1	0.0461	FALSE	183	104	9	328	0	FALSE	ACH-000750
LOXIMVI_SKIN	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LOXIMVI_SKIN	1	1	0.0461	FALSE	183	104	9	328	0	FALSE	ACH-000750
LOXIMVI_SKIN	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LOXIMVI_SKIN	1	1	0.0461	TRUE	0	0	0	434	0	FALSE	ACH-000750
LOXIMVI_SKIN	MT-ATP6--MT-CO1	3	2	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	10722	18591	0	0	0.0346	0.0231	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LOXIMVI_SKIN	0	0	0.0577	FALSE	183	104	9	328	0	FALSE	ACH-000750
LOXIMVI_SKIN	RP11-123O10.4--GRIP1	3	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0.0231	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LOXIMVI_SKIN	1	1	0.0577	FALSE	416	2512	207	587	0	FALSE	ACH-000750
LOXIMVI_SKIN	ATP9B--ZNF516	3	1	ATP9B	25606	chr18:77037196:+	ZNF516	60555	chr18:74092259:-	ONLY_REF_SPLICE	YES	8	36	0.33	0.1	0.0346	0.0115	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},{Klijn_CCL:Skin=1},ATP9B->ATPase_phospholipid_transporting_9B_(putative),chr18:76829285-77138283:+,ZNF516->chr18:74069644-74207146:-,zinc_finger_protein_516	LOXIMVI_SKIN	0.1	0.33	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000750
LOXIMVI_SKIN	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10830	20352	0	0	0.0346	0.0115	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LOXIMVI_SKIN	0	0	0.0461	FALSE	183	104	9	328	0	FALSE	ACH-000750
LOXIMVI_SKIN	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	32	1	0.11	0.0346	0.0115	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LOXIMVI_SKIN	0.11	1	0.0461	TRUE	64	13	3	59	0	FALSE	ACH-000750
LOXIMVI_SKIN	CCDC82--CEP57	3	0	CCDC82	1080	chr11:96123008:-	CEP57	23975	chr11:95532396:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},CCDC82->chr11:96085933-96123087:-,coiled-coil_domain_containing_82,CEP57->centrosomal_protein_57,chr11:95523129-95565857:+	LOXIMVI_SKIN	1	1	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000750
LOXIMVI_SKIN	EIF1--RPS28	3	0	EIF1	1089	chr17:39845225:+	RPS28	8128	chr19:8386385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	LOXIMVI_SKIN	1	1	0.0346	TRUE	0	0	0	81	0	FALSE	ACH-000750
LOXIMVI_SKIN	FTH1--ACTG1	3	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	LOXIMVI_SKIN	1	1	0.0346	TRUE	0	0	0	64	0	FALSE	ACH-000750
LOXIMVI_SKIN	RP11-444D3.1--SOX5	1	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0115	0.0577	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LOXIMVI_SKIN	1	1	0.0692	TRUE	160	277	29	98	0	FALSE	ACH-000750
LOXIMVI_SKIN	AC104389.28--HBE1	2	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	LOXIMVI_SKIN	1	1	0.0231	TRUE	0	16	0	53	13	FALSE	ACH-000750
LOXIMVI_SKIN	BTRC--YWHAE	2	0	BTRC	1166	chr10:103113985:+	YWHAE	28391	chr17:1268352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	BTRC->Oncogene{Bushman},beta-transducin_repeat_containing_E3_ubiquitin_protein_ligase,chr10:103113820-103317078:+,YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon	LOXIMVI_SKIN	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000750
LOXIMVI_SKIN	CACNA2D4--INF2	2	0	CACNA2D4	26408	chr12:1919444:-	INF2	56520	chr14:105185132:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-,INF2->chr14:105155943-105185942:+,inverted_formin,_FH2_and_WH2_domain_containing	LOXIMVI_SKIN	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000750
LOXIMVI_SKIN	NCOR2--UBC	2	0	NCOR2	2329	chr12:125020111:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	LOXIMVI_SKIN	1	1	0.0231	TRUE	48	117	12	14	0	FALSE	ACH-000750
LOXIMVI_SKIN	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	LOXIMVI_SKIN	1	1	0.0231	TRUE	145	312	16	51	0	FALSE	ACH-000750
LOXIMVI_SKIN	PTBP3--KIAA0368	2	0	PTBP3	1198	chr9:115095750:-	KIAA0368	27893	chr9:114213835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,KIAA0368->KIAA0368,chr9:114122972-114247025:-	LOXIMVI_SKIN	1	1	0.0231	TRUE	0	0	0	3	0	TRUE	ACH-000750
LOXIMVI_SKIN	RCC1--TCP1	2	0	RCC1	2175	chr1:28834672:+	TCP1	25988	chr6:160201119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TCP1->chr6:160199530-160210781:-,t-complex_1	LOXIMVI_SKIN	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000750
LOXIMVI_SKIN	SMAP2--ALS2	2	0	SMAP2	3725	chr1:40839895:+	ALS2	50810	chr2:202581434:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	SMAP2->chr1:40810522-40888998:+,small_ArfGAP2,ALS2->ALS2,_alsin_Rho_guanine_nucleotide_exchange_factor,chr2:202565277-202645912:-	LOXIMVI_SKIN	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000750
LOXIMVI_SKIN	TAF1D--FKBP4	2	0	TAF1D	6933	chr11:93470230:-	FKBP4	21185	chr12:2908254:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-,FKBP4->FK506_binding_protein_4,chr12:2904119-2914576:+	LOXIMVI_SKIN	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000750
LOXIMVI_SKIN	WTAPP1--RUVBL1	2	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	LOXIMVI_SKIN	1	1	0.0231	TRUE	9	252	6	66	0	FALSE	ACH-000750
LOXIMVI_SKIN	CEP170--SDCCAG8	1	2	CEP170	1309	chr1:243418342:-	SDCCAG8	41727	chr1:243449574:+	ONLY_REF_SPLICE	YES	311	426	0.01	0.01	0.0115	0.0231	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Artery_-_Coronary=1,Nerve_-_Tibial=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:-:+:[670],CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	LOXIMVI_SKIN	0.01	0.01	0.0346	FALSE	0	0	0	1	0	FALSE	ACH-000750
LOXIMVI_SKIN	EED--PICALM	1	2	EED	10592	chr11:85977258:+	PICALM	22249	chr11:85742653:-	ONLY_REF_SPLICE	NO	129	556	0.02	0.01	0.0115	0.0231	EED->chr11:85955586-85989855:+,embryonic_ectoderm_development,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	LOXIMVI_SKIN	0.01	0.02	0.0346	FALSE	0	0	0	1	0	FALSE	ACH-000750
LOXIMVI_SKIN	BDNF--KIF18A	1	1	BDNF	4885	chr11:27722844:-	KIF18A	32758	chr11:28058211:-	ONLY_REF_SPLICE	YES	113	147	0.02	0.01	0.0115	0.0115	BDNF->brain-derived_neurotrophic_factor,chr11:27676440-27743605:-,KIF18A->chr11:28042167-28129855:-,kinesin_family_member_18A	LOXIMVI_SKIN	0.01	0.02	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000750
LOXIMVI_SKIN	CEP170--SDCCAG8	1	1	CEP170	1309	chr1:243418342:-	SDCCAG8	58616	chr1:243589729:+	ONLY_REF_SPLICE	NO	311	476	0.01	0	0.0115	0.0115	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Artery_-_Coronary=1,Nerve_-_Tibial=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:-:+:[670],CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	LOXIMVI_SKIN	0	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000750
LOXIMVI_SKIN	HSP90B1--AC147651.4	1	1	HSP90B1	10960	chr12:104337097:+	AC147651.4	19199	chr7:647502:+	ONLY_REF_SPLICE	NO	2400	0	0	1	0.0115	0.0115	HSP90B1->Oncogene{Bushman},chr12:104323885-104347423:+,heat_shock_protein_90kDa_beta_family_member_1,AC147651.4->chr7:642822-648119:+	LOXIMVI_SKIN	0	1	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000750
LOXIMVI_SKIN	LINC01036--LINC01037	1	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0.0115	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	LOXIMVI_SKIN	1	1	0.023	FALSE	0	24	0	62	0	FALSE	ACH-000750
LOXIMVI_SKIN	NDUFV3--U2AF1	1	1	NDUFV3	5809	chr21:44317157:+	U2AF1	26761	chr21:44515853:-	ONLY_REF_SPLICE	YES	216	1850	0.01	0	0.0115	0.0115	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Substantia_nigra=1},NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	LOXIMVI_SKIN	0	0.01	0.023	FALSE	0	5	0	8	0	FALSE	ACH-000750
LOXIMVI_SKIN	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	6	15	0.25	0.12	0.0115	0.0115	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LOXIMVI_SKIN	0.12	0.25	0.023	FALSE	25	145	6	90	0	FALSE	ACH-000750
LOXIMVI_SKIN	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0115	0.0115	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LOXIMVI_SKIN	1	1	0.023	TRUE	62	24	1	171	0	FALSE	ACH-000750
LOXIMVI_SKIN	UVSSA--MAEA	1	1	UVSSA	1924	chr4:1341977:+	MAEA	26629	chr4:1305767:+	ONLY_REF_SPLICE	NO	19	63	0.1	0.03	0.0115	0.0115	GTEx_FI:{Blood=[count:5=pct:2.9],Skin=[count:4=pct:1.3],Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:1=pct:0.8],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[7119],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	LOXIMVI_SKIN	0.03	0.1	0.023	TRUE	0	3	0	4	2	FALSE	ACH-000750
LOXIMVI_SKIN	UVSSA--MAEA	1	1	UVSSA	7499	chr4:1349033:+	MAEA	26629	chr4:1305767:+	ONLY_REF_SPLICE	YES	15	63	0.12	0.03	0.0115	0.0115	GTEx_FI:{Blood=[count:5=pct:2.9],Skin=[count:4=pct:1.3],Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:1=pct:0.8],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[7119],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	LOXIMVI_SKIN	0.03	0.12	0.023	TRUE	2	0	0	5	0	FALSE	ACH-000750
VMCUB1_URINARY_TRACT	PPP6R3--ASRGL1	6	1	PPP6R3	1110	chr11:68228295:+	ASRGL1	45594	chr11:62156605:+	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.1494	0.0249	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,ASRGL1->asparaginase_like_1,chr11:62104920-62160882:+	VMCUB1_URINARY_TRACT	0.88	1	0.1743	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	RP11-178C3.1--VMP1	6	1	RP11-178C3.1	2149	chr17:58022879:+	VMP1	22686	chr17:57915656:+	ONLY_REF_SPLICE	YES	0	60	1	0.1	0.1494	0.0249	LOCAL_REARRANGEMENT:+:[98653],RP11-178C3.1->chr17:58018269-58050462:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	VMCUB1_URINARY_TRACT	0.1	1	0.1743	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	TUBD1--CLTC	4	4	TUBD1	8664	chr17:57955464:-	CLTC	48447	chr17:57771089:+	ONLY_REF_SPLICE	YES	0	29	1	0.22	0.0996	0.0996	TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain	VMCUB1_URINARY_TRACT	0.22	1	0.1992	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	MT-ND4--MT-ND4L	4	3	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	111	0	0.06	1	0.0996	0.0747	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	VMCUB1_URINARY_TRACT	0.06	1	0.1743	FALSE	344	827	44	306	0	FALSE	ACH-000545
VMCUB1_URINARY_TRACT	AMOTL1--RAB38	4	0	AMOTL1	3353	chr11:94474154:+	RAB38	31321	chr11:87883123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0996	0	AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+,RAB38->RAB38,_member_RAS_oncogene_family,chr11:87846410-87908635:-	VMCUB1_URINARY_TRACT	1	1	0.0996	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	SEMA3B--TPM4	4	0	SEMA3B	3592	chr3:50307685:+	TPM4	19518	chr19:16192750:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0996	0	SEMA3B->Oncogene{Bushman},chr3:50304990-50314977:+,semaphorin_3B,TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4	VMCUB1_URINARY_TRACT	1	1	0.0996	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	WLS--PVRL1	4	0	WLS	1746	chr1:68698058:-	PVRL1	36037	chr11:119532242:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0996	0	WLS->chr1:68564142-68698803:-,wntless_Wnt_ligand_secretion_mediator,PVRL1->chr11:119494120-119599794:-	VMCUB1_URINARY_TRACT	1	1	0.0996	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	MT-ND4--MT-ND4L	3	3	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8	0	0.43	1	0.0747	0.0747	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	VMCUB1_URINARY_TRACT	0.43	1	0.1494	FALSE	344	826	44	306	0	FALSE	ACH-000545
VMCUB1_URINARY_TRACT	TRPM4--SNRNP70	3	1	TRPM4	6449	chr19:49671993:+	SNRNP70	28382	chr19:49601684:+	ONLY_REF_SPLICE	YES	1	22	0.8	0.15	0.0747	0.0249	LOCAL_REARRANGEMENT:+:[49136],TRPM4->chr19:49660998-49715093:+,transient_receptor_potential_cation_channel_subfamily_M_member_4,SNRNP70->chr19:49588676-49611862:+,small_nuclear_ribonucleoprotein_U1_subunit_70	VMCUB1_URINARY_TRACT	0.15	0.8	0.0996	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	ANO1-AS1--RABL3	3	0	ANO1-AS1	1149	chr11:70034467:-	RABL3	14580	chr3:120408347:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	ANO1-AS1->ANO1_antisense_RNA_1,chr11:70033894-70034615:-,RABL3->RAB,_member_of_RAS_oncogene_family_like_3,chr3:120405528-120461840:-	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	ASPH--GTF2A1	3	0	ASPH	26539	chr8:62537414:-	GTF2A1	62329	chr14:81644320:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,GTF2A1->Oncogene{Bushman},chr14:81641796-81687721:-,general_transcription_factor_IIA_subunit_1	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	CELSR1--NRP1	3	0	CELSR1	17592	chr22:46795674:-	NRP1	69934	chr10:33483582:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-,NRP1->chr10:33466420-33625190:-,neuropilin_1	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	CSPG4P12--TBC1D2B	3	0	CSPG4P12	11871	chr15:85748570:+	TBC1D2B	42500	chr15:78288814:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	CSPG4P12->chondroitin_sulfate_proteoglycan_4_pseudogene_12,chr15:85734669-85757136:+,TBC1D2B->TBC1_domain_family_member_2B,chr15:78276378-78370066:-	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	DUSP4--ACTN4	3	0	DUSP4	9239	chr8:29194469:-	ACTN4	16174	chr19:39138335:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	DUSP4->chr8:29190581-29208185:-,dual_specificity_phosphatase_4,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	EWSR1--ATP2B4	3	0	EWSR1	21281	chr22:29695698:+	ATP2B4	36563	chr1:203678621:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	GLG1--AC004158.2	3	0	GLG1	1458	chr16:74640555:-	AC004158.2	43775	chr16:72557314:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0747	0	GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,AC004158.2->chr16:72459384-72698908:-	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	INPP5E--NUDCD3	3	0	INPP5E	8545	chr9:139323986:-	NUDCD3	27402	chr7:44424623:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	INPP5E->chr9:139323071-139334274:-,inositol_polyphosphate-5-phosphatase_E,NUDCD3->NudC_domain_containing_3,chr7:44418720-44530479:-	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	PPIP5K2--C6orf48	3	0	PPIP5K2	1340	chr5:102456192:+	C6orf48	50437	chr6:31803188:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0747	0	PPIP5K2->chr5:102455853-102548500:+,diphosphoinositol_pentakisphosphate_kinase_2,C6orf48->chr6:31802385-31807541:+,chromosome_6_open_reading_frame_48	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	RP11-108K3.1--GLDN	3	0	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0747	0	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	VMCUB1_URINARY_TRACT	1	1	0.0747	FALSE	0	30	1	55	0	FALSE	ACH-000545
VMCUB1_URINARY_TRACT	RUVBL1--PRDX1	3	0	RUVBL1	8380	chr3:127819437:-	PRDX1	27131	chr1:45980579:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-,PRDX1->Oncogene{Bushman},chr1:45976708-45988719:-,peroxiredoxin_1	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	TINAGL1--MSN	3	0	TINAGL1	10557	chr1:32052875:+	MSN	32557	chrX:64959774:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	TINAGL1->chr1:32042116-32053288:+,tubulointerstitial_nephritis_antigen_like_1,MSN->Oncogene{Bushman},chrX:64808257-64961791:+,moesin	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	ULK1--FDPS	3	0	ULK1	10717	chr12:132398913:+	FDPS	29485	chr1:155290269:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	ULK1->chr12:132379196-132407712:+,unc-51_like_autophagy_activating_kinase_1,FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase	VMCUB1_URINARY_TRACT	1	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	GNB1--EIF4G2	2	0	GNB1	5398	chr1:1756836:-	EIF4G2	30000	chr11:10822634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-,EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2	VMCUB1_URINARY_TRACT	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	IFNAR1--COL18A1	2	0	IFNAR1	2827	chr21:34707953:+	COL18A1	22284	chr21:46888156:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	IFNAR1->Oncogene{Bushman},chr21:34696734-34732168:+,interferon_alpha_and_beta_receptor_subunit_1,COL18A1->chr21:46825052-46933634:+,collagen_type_XVIII_alpha_1	VMCUB1_URINARY_TRACT	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	MGST2--SCOC	2	0	MGST2	6786	chr4:140625350:+	SCOC	20254	chr4:141300275:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	MGST2->chr4:140586922-140661899:+,microsomal_glutathione_S-transferase_2,SCOC->chr4:141178440-141306880:+,short_coiled-coil_protein	VMCUB1_URINARY_TRACT	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	MIR205HG--C14orf166	2	0	MIR205HG	2657	chr1:209603821:+	C14orf166	13254	chr14:52466426:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C14orf166->chr14:52456193-52471420:+,chromosome_14_open_reading_frame_166	VMCUB1_URINARY_TRACT	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	MYEOV--VWCE	2	0	MYEOV	6399	chr11:69084392:+	VWCE	18077	chr11:61050377:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,VWCE->chr11:61025762-61062896:-,von_Willebrand_factor_C_and_EGF_domains	VMCUB1_URINARY_TRACT	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	NAMPT--ARID4A	2	0	NAMPT	2499	chr7:105925274:-	ARID4A	46511	chr14:58832236:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	NAMPT->chr7:105888731-105926772:-,nicotinamide_phosphoribosyltransferase,ARID4A->AT-rich_interaction_domain_4A,Oncogene{Bushman},chr14:58765103-58840605:+	VMCUB1_URINARY_TRACT	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000545
VMCUB1_URINARY_TRACT	PIN4--EIF3G	2	0	PIN4	2874	chrX:71406384:+	EIF3G	16744	chr19:10227864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	PIN4->chrX:71401203-71522776:+,peptidylprolyl_cis/trans_isomerase,_NIMA-interacting_4,EIF3G->chr19:10225693-10230596:-,eukaryotic_translation_initiation_factor_3_subunit_G	VMCUB1_URINARY_TRACT	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000545
UACC812_BREAST	HDGF--S100A10	107	24	HDGF	5607	chr1:156721135:-	S100A10	16701	chr1:151958727:-	ONLY_REF_SPLICE	YES	6	23	0.96	0.85	1.2929	0.29	HDGF->chr1:156711899-156736717:-,hepatoma-derived_growth_factor,S100A10->Oncogene{Bushman},S100_calcium_binding_protein_A10,chr1:151955391-151966866:-	UACC812_BREAST	0.85	0.96	1.5829	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	WIPF2--ERBB2	61	10	WIPF2	1189	chr17:38375744:+	ERBB2	23149	chr17:37851241:+	ONLY_REF_SPLICE	YES	6	7	0.92	0.91	0.7371	0.1208	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2	UACC812_BREAST	0.91	0.92	0.8579	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	PRPF3--SRGAP2	46	20	PRPF3	10751	chr1:150310802:+	SRGAP2	24300	chr1:206566046:+	ONLY_REF_SPLICE	YES	16	3	0.8	0.96	0.5558	0.2417	PRPF3->chr1:150293925-150325671:+,pre-mRNA_processing_factor_3,SRGAP2->SLIT-ROBO_Rho_GTPase_activating_protein_2,chr1:206516200-206637783:+	UACC812_BREAST	0.8	0.96	0.7975	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	SRGAP2B--PRPF3	25	9	SRGAP2B	6684	chr1:144094424:+	PRPF3	26330	chr1:150321633:+	ONLY_REF_SPLICE	YES	0	24	1	0.59	0.3021	0.1087	SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+,PRPF3->chr1:150293925-150325671:+,pre-mRNA_processing_factor_3	UACC812_BREAST	0.59	1	0.4108	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	WI2-1896O14.1--RP11-353N4.1	21	4	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2537	0.0483	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	UACC812_BREAST	1	1	0.302	TRUE	361	258	24	38	0	FALSE	ACH-000568
UACC812_BREAST	MT-TA--MT-TC	12	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.145	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UACC812_BREAST	1	1	0.145	FALSE	462	80	0	856	0	FALSE	ACH-000568
UACC812_BREAST	PPP1R12B--SNX27	10	5	PPP1R12B	1444	chr1:202318270:+	SNX27	58770	chr1:151655832:+	ONLY_REF_SPLICE	YES	0	4	1	0.79	0.1208	0.0604	GTEx&tcga_normals:1/3694=0.03%,PPP1R12B->chr1:202317827-202561834:+,protein_phosphatase_1_regulatory_subunit_12B,SNX27->chr1:151584541-151671567:+,sorting_nexin_family_member_27	UACC812_BREAST	0.79	1	0.1812	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	LMO7--SCEL	9	3	LMO7	28443	chr13:76408523:+	SCEL	49572	chr13:78129992:+	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.1087	0.0362	LMO7->LIM_domain_7,Oncogene{Bushman},chr13:76194570-76434004:+,SCEL->chr13:78109809-78219398:+,sciellin	UACC812_BREAST	0.86	1	0.1449	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	ARID1A--WDTC1	9	1	ARID1A	2508	chr1:27024031:+	WDTC1	30131	chr1:27608730:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1087	0.0121	{Klijn_CCL:Breast=1},ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+	UACC812_BREAST	1	1	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	LASP1--CSF3	8	2	LASP1	7268	chr17:37054772:+	CSF3	18959	chr17:38171944:+	ONLY_REF_SPLICE	YES	28	47	0.26	0.18	0.0967	0.0242	LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+,CSF3->chr17:38171614-38174066:+,colony_stimulating_factor_3	UACC812_BREAST	0.18	0.26	0.1209	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	WIPF2--ERBB2	5	12	WIPF2	1214	chr17:38375769:+	ERBB2	23149	chr17:37851241:+	ONLY_REF_SPLICE	YES	6	7	0.74	0.71	0.0604	0.145	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2	UACC812_BREAST	0.71	0.74	0.2054	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	PHF12--LRRC37BP1	7	3	PHF12	2707	chr17:27277083:-	LRRC37BP1	26742	chr17:28958773:+	ONLY_REF_SPLICE	YES	8	0	0.56	1	0.0846	0.0362	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,LRRC37BP1->chr17:28956698-28964482:+,leucine_rich_repeat_containing_37B_pseudogene_1	UACC812_BREAST	0.56	1	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	RRNAD1--CTSS	6	7	RRNAD1	5624	chr1:156704285:+	CTSS	18357	chr1:150720355:-	ONLY_REF_SPLICE	YES	11	4	0.54	0.76	0.0725	0.0846	RRNAD1->chr1:156698234-156706752:+,ribosomal_RNA_adenine_dimethylase_domain_containing_1,CTSS->cathepsin_S,chr1:150702672-150738433:-	UACC812_BREAST	0.54	0.76	0.1571	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	RRNAD1--CTSS	4	9	RRNAD1	5590	chr1:156704251:+	CTSS	17951	chr1:150720761:-	INCL_NON_REF_SPLICE	NO	9	0	0.59	1	0.0483	0.1087	RRNAD1->chr1:156698234-156706752:+,ribosomal_RNA_adenine_dimethylase_domain_containing_1,CTSS->cathepsin_S,chr1:150702672-150738433:-	UACC812_BREAST	0.59	1	0.157	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	HDGF--S100A10	6	0	HDGF	4721	chr1:156722021:-	S100A10	16701	chr1:151958727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0725	0	HDGF->chr1:156711899-156736717:-,hepatoma-derived_growth_factor,S100A10->Oncogene{Bushman},S100_calcium_binding_protein_A10,chr1:151955391-151966866:-	UACC812_BREAST	1	1	0.0725	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	SUZ12P--MYO18A	6	0	SUZ12P	1513	chr17:29036829:+	MYO18A	22927	chr17:27494039:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0725	0	SUZ12P->chr17:29036317-29117926:+,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	UACC812_BREAST	1	1	0.0725	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	RRNAD1--CTSS	4	7	RRNAD1	5590	chr1:156704251:+	CTSS	18357	chr1:150720355:-	INCL_NON_REF_SPLICE	YES	9	4	0.55	0.73	0.0483	0.0846	RRNAD1->chr1:156698234-156706752:+,ribosomal_RNA_adenine_dimethylase_domain_containing_1,CTSS->cathepsin_S,chr1:150702672-150738433:-	UACC812_BREAST	0.55	0.73	0.1329	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	RRNAD1--CTSS	5	2	RRNAD1	4651	chr1:156703312:+	CTSS	18357	chr1:150720355:-	ONLY_REF_SPLICE	YES	14	4	0.33	0.64	0.0604	0.0242	RRNAD1->chr1:156698234-156706752:+,ribosomal_RNA_adenine_dimethylase_domain_containing_1,CTSS->cathepsin_S,chr1:150702672-150738433:-	UACC812_BREAST	0.33	0.64	0.0846	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	SUZ12P--MYO18A	5	1	SUZ12P	5451	chr17:29062115:+	MYO18A	22927	chr17:27494039:-	ONLY_REF_SPLICE	YES	16	0	0.27	1	0.0604	0.0121	SUZ12P->chr17:29036317-29117926:+,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	UACC812_BREAST	0.27	1	0.0725	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	WIPF2--ERBB2	5	1	WIPF2	1189	chr17:38375744:+	ERBB2	27594	chr17:37863243:+	ONLY_REF_SPLICE	YES	6	145	0.5	0.04	0.0604	0.0121	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2	UACC812_BREAST	0.04	0.5	0.0725	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	MT-TA--MT-TC	5	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UACC812_BREAST	1	1	0.0604	FALSE	462	80	0	856	0	FALSE	ACH-000568
UACC812_BREAST	WARS2--AKT3	5	0	WARS2	1117	chr1:119683178:-	AKT3	25666	chr1:243859018:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0604	0	WARS2->chr1:119573839-119683294:-,tryptophanyl_tRNA_synthetase_2,_mitochondrial,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3	UACC812_BREAST	1	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	ATAD5--ARHGAP23	4	1	ATAD5	8623	chr17:29171934:+	ARHGAP23	45663	chr17:36642303:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0483	0.0121	ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+,ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+	UACC812_BREAST	0.83	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	HDGF--S100A10	4	1	HDGF	4912	chr1:156721830:-	S100A10	16701	chr1:151958727:-	ONLY_REF_SPLICE	YES	3	23	0.62	0.18	0.0483	0.0121	HDGF->chr1:156711899-156736717:-,hepatoma-derived_growth_factor,S100A10->Oncogene{Bushman},S100_calcium_binding_protein_A10,chr1:151955391-151966866:-	UACC812_BREAST	0.18	0.62	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	MLLT6--PLXDC1	4	0	MLLT6	2488	chr17:36863282:+	PLXDC1	47428	chr17:37234301:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0483	0	MLLT6->Oncogene{Bushman},chr17:36861795-36886056:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_6,PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1	UACC812_BREAST	1	1	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	POLR2J2--SAMHD1	4	0	POLR2J2	5507	chr7:102281082:-	SAMHD1	29720	chr20:35519906:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	POLR2J2->chr7:102277474-102312076:-,chr7:102277496-102312088:-,polymerase_(RNA)_II_subunit_J2,SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-	UACC812_BREAST	1	1	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	AKT3--P2RX5	3	2	AKT3	16835	chr1:243809195:-	P2RX5	45288	chr17:3585272:-	ONLY_REF_SPLICE	NO	0	2	1	0.71	0.0362	0.0242	{Klijn_CCL:Breast=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,P2RX5->chr17:3575493-3599698:-,purinergic_receptor_P2X_5	UACC812_BREAST	0.71	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	ACTB--ALKBH7	3	0	ACTB	7441	chr7:5567207:-	ALKBH7	12981	chr19:6374558:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,ALKBH7->alkB_homolog_7,chr19:6372444-6375042:+	UACC812_BREAST	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	CDO1--CTNNB1	3	0	CDO1	8561	chr5:115140914:-	CTNNB1	28486	chr3:41281774:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	CDO1->chr5:115140430-115152651:-,cysteine_dioxygenase_type_1,CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+	UACC812_BREAST	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	CTC-297N7.8--TOB1	3	0	CTC-297N7.8	1522	chr17:10578802:-	TOB1	12116	chr17:48939724:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	CTC-297N7.8->chr17:10575791-10579323:-,TOB1->chr17:48939584-48945339:-,transducer_of_ERBB2,_1	UACC812_BREAST	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	GPC6--PCDH9-AS2	3	0	GPC6	2934	chr13:94197674:+	PCDH9-AS2	22822	chr13:67488530:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	GPC6->chr13:93879095-95059655:+,glypican_6,PCDH9-AS2->PCDH9_antisense_RNA_2,chr13:67399301-67489163:+	UACC812_BREAST	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	IGFBP2--CLK2	3	0	IGFBP2	5478	chr2:217526680:+	CLK2	16676	chr1:155238229:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	IGFBP2->Oncogene{Bushman},chr2:217497551-217529159:+,insulin_like_growth_factor_binding_protein_2,CLK2->CDC_like_kinase_2,chr1:155232659-155248282:-	UACC812_BREAST	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	LAPTM4B--CSE1L	3	0	LAPTM4B	8797	chr8:98864185:+	CSE1L	30840	chr20:47707495:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta,CSE1L->Oncogene{Bushman},chr20:47662849-47713489:+,chromosome_segregation_1_like	UACC812_BREAST	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	MT-ND2--SPOP	3	0	MT-ND2	1957	chrM:5426:+	SPOP	23608	chr17:47676865:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein	UACC812_BREAST	1	1	0.0362	FALSE	0	0	0	1	0	FALSE	ACH-000568
UACC812_BREAST	MT-TA--MT-TC	3	0	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UACC812_BREAST	1	1	0.0362	FALSE	462	80	0	856	0	FALSE	ACH-000568
UACC812_BREAST	PTP4A2--CHD3	3	0	PTP4A2	5019	chr1:32401187:-	CHD3	24955	chr17:7793053:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CHD3->Oncogene{Bushman},chr17:7788124-7816078:+,chromodomain_helicase_DNA_binding_protein_3	UACC812_BREAST	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	SIPA1--KANSL1	3	0	SIPA1	10348	chr11:65416833:+	KANSL1	35574	chr17:44117172:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	SIPA1->Oncogene{Bushman},chr11:65405568-65418401:+,signal-induced_proliferation-associated_1,KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-	UACC812_BREAST	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	RRNAD1--CTSS	2	3	RRNAD1	4651	chr1:156703312:+	CTSS	17951	chr1:150720761:-	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0242	0.0362	RRNAD1->chr1:156698234-156706752:+,ribosomal_RNA_adenine_dimethylase_domain_containing_1,CTSS->cathepsin_S,chr1:150702672-150738433:-	UACC812_BREAST	0.26	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	CEP128--TTC1	2	0	CEP128	15647	chr14:81329101:-	TTC1	46159	chr5:159462147:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,TTC1->chr5:159436120-159492550:+,tetratricopeptide_repeat_domain_1	UACC812_BREAST	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	DAG1--CYFIP1	2	0	DAG1	1343	chr3:49506488:+	CYFIP1	20817	chr15:22925777:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	DAG1->chr3:49506146-49573048:+,dystroglycan_1,CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1	UACC812_BREAST	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	NANS--UBE2D2	2	0	NANS	2418	chr9:100823279:+	UBE2D2	17026	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	NANS->N-acetylneuraminate_synthase,chr9:100819021-100845357:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	UACC812_BREAST	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	NSD1--RP11-1277A3.2	2	0	NSD1	21541	chr5:176684152:+	RP11-1277A3.2	46002	chr5:177059739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,RP11-1277A3.2->chr5:177046060-177099210:-	UACC812_BREAST	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	NUDT1--HACE1	2	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	UACC812_BREAST	1	1	0.0242	TRUE	1	20	0	20	17	FALSE	ACH-000568
UACC812_BREAST	SCEL--LINC00446	2	0	SCEL	4068	chr13:78133998:+	LINC00446	39087	chr13:78605998:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	SCEL->chr13:78109809-78219398:+,sciellin,LINC00446->chr13:78587018-78627730:+,long_intergenic_non-protein_coding_RNA_446	UACC812_BREAST	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	TBC1D22A--HAP1	2	0	TBC1D22A	1228	chr22:47158745:+	HAP1	27673	chr17:39889050:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,HAP1->chr17:39873994-39890896:-,huntingtin-associated_protein_1	UACC812_BREAST	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	LMO7--SCEL	1	3	LMO7	26166	chr13:76398009:+	SCEL	49572	chr13:78129992:+	ONLY_REF_SPLICE	NO	13	0	0.24	1	0.0121	0.0362	LMO7->LIM_domain_7,Oncogene{Bushman},chr13:76194570-76434004:+,SCEL->chr13:78109809-78219398:+,sciellin	UACC812_BREAST	0.24	1	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	PRPF3--SRGAP2	1	3	PRPF3	9584	chr1:150307712:+	SRGAP2	24300	chr1:206566046:+	ONLY_REF_SPLICE	NO	19	3	0.17	0.57	0.0121	0.0362	PRPF3->chr1:150293925-150325671:+,pre-mRNA_processing_factor_3,SRGAP2->SLIT-ROBO_Rho_GTPase_activating_protein_2,chr1:206516200-206637783:+	UACC812_BREAST	0.17	0.57	0.0483	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	PHF12--LRRC37BP1	1	2	PHF12	2707	chr17:27277083:-	LRRC37BP1	28085	chr17:28960116:+	ONLY_REF_SPLICE	YES	8	15	0.27	0.17	0.0121	0.0242	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,LRRC37BP1->chr17:28956698-28964482:+,leucine_rich_repeat_containing_37B_pseudogene_1	UACC812_BREAST	0.17	0.27	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	A4GALT--TTLL1	1	1	A4GALT	1134	chr22:43117171:-	TTLL1	17478	chr22:43447893:-	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0121	0.0121	A4GALT->alpha_1,4-galactosyltransferase,chr22:43088127-43117304:-,TTLL1->chr22:43435522-43485434:-,tubulin_tyrosine_ligase_like_1	UACC812_BREAST	0.5	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000568
UACC812_BREAST	WIPF2--ERBB2	1	1	WIPF2	1617	chr17:38376172:+	ERBB2	27594	chr17:37863243:+	ONLY_REF_SPLICE	YES	6	145	0.25	0.01	0.0121	0.0121	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2	UACC812_BREAST	0.01	0.25	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000568
UACC812_BREAST	WIPF2--ERBB2	1	1	WIPF2	1214	chr17:38375769:+	ERBB2	27594	chr17:37863243:+	ONLY_REF_SPLICE	YES	6	145	0.25	0.01	0.0121	0.0121	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2	UACC812_BREAST	0.01	0.25	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000568
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	167	56	IGH@	94353	chr14:106330425:-	WHSC1	138040	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	69	1	0.76	2.6058	0.8738	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	3.4796	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	161	56	IGH@	94754	chr14:106330024:-	WHSC1	138040	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	69	1	0.76	2.5122	0.8738	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	3.386	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	100	52	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5604	0.8114	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.3718	TRUE	508	994	45	981	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	47	56	IGH@	93161	chr14:106331617:-	WHSC1	138040	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	69	1	0.6	0.7334	0.8738	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	1.6072	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	57	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	250	8	0.2	0.89	0.8894	0.1092	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.89	0.9986	TRUE	519	3926	326	965	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRD1--PHBP12	40	54	NRD1	27233	chr1:52263921:-	PHBP12	36992	chr1:51246299:+	INCL_NON_REF_SPLICE	YES	332	58	0.22	0.62	0.6241	0.8426	NRD1->chr1:52254863-52344477:-,PHBP12->chr1:51246012-51246822:+,prohibitin_pseudogene_12	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.62	1.4667	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	28	56	IGH@	95370	chr14:106329408:-	WHSC1	138040	chr4:1902353:+	ONLY_REF_SPLICE	NO	0	69	1	0.55	0.4369	0.8738	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	1.3107	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	41	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6398	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6398	FALSE	499	1288	110	792	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	21	64	IGH@	94353	chr14:106330425:-	WHSC1	134111	chr4:1893893:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	0.3277	0.9986	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.3263	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	21	64	IGH@	94754	chr14:106330024:-	WHSC1	134111	chr4:1893893:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	0.3277	0.9986	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.3263	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	19	61	IGH@	94754	chr14:106330024:-	WHSC1	135675	chr4:1895457:+	ONLY_REF_SPLICE	YES	0	21	1	0.79	0.2965	0.9518	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	1.2483	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	19	61	IGH@	94353	chr14:106330425:-	WHSC1	135675	chr4:1895457:+	ONLY_REF_SPLICE	YES	0	21	1	0.79	0.2965	0.9518	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	1.2483	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIF20B--GBE1	28	17	KIF20B	27158	chr10:91514430:+	GBE1	46563	chr3:81699072:-	ONLY_REF_SPLICE	YES	24	13	0.65	0.78	0.4369	0.2653	{Klijn_CCL:Lymphoid=1},KIF20B->chr10:91461367-91534700:+,kinesin_family_member_20B,GBE1->chr3:81538850-81811312:-,glucan_(1,4-alpha-),_branching_enzyme_1	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.78	0.7022	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLK1--RP11-340A13.3	26	21	TLK1	7437	chr2:171974249:-	RP11-340A13.3	37878	chr4:59940962:-	INCL_NON_REF_SPLICE	YES	61	0	0.44	1	0.4057	0.3277	TLK1->chr2:171847333-172087824:-,tousled_like_kinase_1,RP11-340A13.3->chr4:59912738-59940974:-	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.7334	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	26	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4057	0.0156	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4213	FALSE	462	80	0	856	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	25	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3901	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3901	TRUE	0	0	0	518	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	8	64	IGH@	93161	chr14:106331617:-	WHSC1	134111	chr4:1893893:+	ONLY_REF_SPLICE	NO	0	1	1	0.99	0.1248	0.9986	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.1234	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACOXL--BCL2L11	20	13	ACOXL	11562	chr2:111598982:+	BCL2L11	42938	chr2:111907621:+	ONLY_REF_SPLICE	YES	48	49	0.41	0.4	0.3121	0.2028	NEIGHBORS[1156],ACOXL->acyl-CoA_oxidase-like,chr2:111490150-111875799:+,BCL2L11->BCL2_like_11,Oncogene{Bushman},chr2:111876955-111926024:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.41	0.5149	FALSE	0	0	0	2	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	7	64	IGH@	95370	chr14:106329408:-	WHSC1	134111	chr4:1893893:+	ONLY_REF_SPLICE	NO	0	1	1	0.99	0.1092	0.9986	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.1078	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	21	4	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	10	0	0.71	1	0.3277	0.0624	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.3901	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	6	61	IGH@	93161	chr14:106331617:-	WHSC1	135675	chr4:1895457:+	ONLY_REF_SPLICE	NO	0	21	1	0.76	0.0936	0.9518	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	1.0454	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	20	4	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	7	0	0.77	1	0.3121	0.0624	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.3745	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	5	61	IGH@	95370	chr14:106329408:-	WHSC1	135675	chr4:1895457:+	ONLY_REF_SPLICE	NO	0	21	1	0.76	0.078	0.9518	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	1.0298	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GBE1--KIF20B	17	7	GBE1	5175	chr3:81719989:-	KIF20B	53134	chr10:91518463:+	ONLY_REF_SPLICE	YES	15	24	0.62	0.5	0.2653	0.1092	{Klijn_CCL:Lymphoid=1},GBE1->chr3:81538850-81811312:-,glucan_(1,4-alpha-),_branching_enzyme_1,KIF20B->chr10:91461367-91534700:+,kinesin_family_member_20B	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.62	0.3745	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	17	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	6	0	0.78	1	0.2653	0.0624	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.3277	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	14	14	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	1	0.85	0.97	0.2185	0.2185	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.97	0.437	FALSE	344	821	44	306	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	3	57	IGH@	95436	chr14:106329342:-	WHSC1	138040	chr4:1902353:+	INCL_NON_REF_SPLICE	NO	0	69	1	0.47	0.0468	0.8894	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.9362	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	17	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2653	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2653	FALSE	499	1288	110	792	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2497	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2497	FALSE	499	1288	110	792	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	56	IGH@	94353	chr14:106330425:-	WHSC1	136858	chr4:1900948:+	ONLY_REF_SPLICE	YES	0	78	1	0.42	0.0156	0.8738	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.8894	TRUE	0	0	0	2	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	12	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	52	17	0.31	0.57	0.1872	0.1716	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.57	0.3588	TRUE	267	562	48	632	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	10	15	MT-CO3	1666	chrM:9872:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	3	0.93	0.89	0.156	0.2341	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.93	0.3901	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	13	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2028	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2028	FALSE	462	80	0	856	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YIPF1--ZCCHC11	10	8	YIPF1	10570	chr1:54325729:-	ZCCHC11	34502	chr1:52941207:-	ONLY_REF_SPLICE	YES	80	110	0.18	0.14	0.156	0.1248	YIPF1->Yip1_domain_family_member_1,chr1:54317392-54356407:-,ZCCHC11->chr1:52873954-53019159:-,zinc_finger_CCHC-type_containing_11	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.18	0.2808	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	9	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1404	0.1248	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2652	FALSE	416	2512	207	587	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	8	11	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	7	3	0.73	0.86	0.1248	0.1716	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.86	0.2964	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	10	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.156	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.156	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	8	8	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.89	0.1248	0.1248	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.2496	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AP000345.1	9	1	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1404	0.0156	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.156	TRUE	4	17	0	31	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	7	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	51	17	0.23	0.47	0.1092	0.1248	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.47	0.234	TRUE	267	562	48	632	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	13	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	5	65	0.78	0.22	0.078	0.2028	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.78	0.2808	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	1	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	31	0	0.23	1	0.1248	0.0156	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.1404	FALSE	344	827	44	306	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COL4A3--FBXO36	6	8	COL4A3	39327	chr2:228163528:+	FBXO36	55424	chr2:230840957:+	ONLY_REF_SPLICE	YES	5	0	0.74	1	0.0936	0.1248	{Klijn_CCL:Lymphoid=1},COL4A3->Oncogene{Bushman},chr2:228029281-228179508:+,collagen_type_IV_alpha_3,FBXO36->F-box_protein_36,chr2:230787018-230877825:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	0.2184	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	7	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.87	0.0936	0.1092	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	0.2028	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	14	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	11	4	0.62	0.82	0.0624	0.2185	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.82	0.2809	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	9	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.88	0.078	0.1404	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.2184	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAND1--ACSS3	5	8	CAND1	6552	chr12:67688936:+	ACSS3	29482	chr12:81416162:+	ONLY_REF_SPLICE	YES	182	0	0.07	1	0.078	0.1248	{Klijn_CCL:Lymphoid=1},CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1,ACSS3->acyl-CoA_synthetase_short-chain_family_member_3,chr12:81331594-81650533:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.2028	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1092	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1092	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	7	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	6	0	0.67	1	0.078	0.1092	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.1872	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAND1--ACSS3	5	6	CAND1	6552	chr12:67688936:+	ACSS3	32840	chr12:81503339:+	ONLY_REF_SPLICE	YES	182	0	0.06	1	0.078	0.0936	{Klijn_CCL:Lymphoid=1},CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1,ACSS3->acyl-CoA_synthetase_short-chain_family_member_3,chr12:81331594-81650533:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.1716	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	14	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	11	2	0.61	0.89	0.0468	0.2185	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.89	0.2653	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV3-7	6	1	AC096579.7	3894	chr2:89157024:-	IGKV3-7	8964	chr2:89278061:-	INCL_NON_REF_SPLICE	YES	8762	0	0	1	0.0936	0.0156	AC096579.7->chr2:89130700-89165653:-,IGKV3-7->chr2:89277987-89278600:-,immunoglobulin_kappa_variable_3-7_(non-functional)	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1092	TRUE	0	0	0	1	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	4	MT-CO3	1173	chrM:9379:+	MT-ATP6	5450	chrM:9192:+	INCL_NON_REF_SPLICE	YES	10	0	0.47	1	0.078	0.0624	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.1404	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0936	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0936	FALSE	499	1288	110	792	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	10	MT-CO3	1151	chrM:9357:+	MT-ATP6	5333	chrM:9075:+	INCL_NON_REF_SPLICE	YES	7	2	0.65	0.87	0.0468	0.156	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.87	0.2028	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	6	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0624	0.0936	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.156	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV3-7	4	5	AC096579.7	4023	chr2:89156895:-	IGKV3-7	8807	chr2:89278218:-	INCL_NON_REF_SPLICE	YES	9183	1	0	0.9	0.0624	0.078	AC096579.7->chr2:89130700-89165653:-,IGKV3-7->chr2:89277987-89278600:-,immunoglobulin_kappa_variable_3-7_(non-functional)	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.9	0.1404	TRUE	0	0	0	1	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACOXL--BCL2L11	2	13	ACOXL	11562	chr2:111598982:+	BCL2L11	39490	chr2:111899890:+	ONLY_REF_SPLICE	YES	48	53	0.24	0.22	0.0312	0.2028	NEIGHBORS[1156],ACOXL->acyl-CoA_oxidase-like,chr2:111490150-111875799:+,BCL2L11->BCL2_like_11,Oncogene{Bushman},chr2:111876955-111926024:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.24	0.234	FALSE	0	0	0	1	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	5	MT-CO3	1393	chrM:9599:+	MT-ATP6	5454	chrM:9196:+	INCL_NON_REF_SPLICE	YES	8	0	0.53	1	0.0624	0.078	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	1	0.1404	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	1	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	16	0	0.27	1	0.078	0.0156	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.0936	FALSE	344	826	44	306	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.078	0.0156	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0936	FALSE	462	80	0	856	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--SEPT7	5	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.078	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.078	TRUE	1	1	0	18	1	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	4	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	10	0	0.44	1	0.0624	0.0624	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.1248	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	4	MT-CO3	1061	chrM:9267:+	MT-ATP6	5343	chrM:9085:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.89	0.0624	0.0624	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1248	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	0	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.078	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.078	FALSE	499	1288	110	792	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLK1--RP11-340A13.3	2	11	TLK1	7437	chr2:171974249:-	RP11-340A13.3	38943	chr4:59913853:-	ONLY_REF_SPLICE	YES	61	0	0.18	1	0.0312	0.1716	TLK1->chr2:171847333-172087824:-,tousled_like_kinase_1,RP11-340A13.3->chr4:59912738-59940974:-	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.2028	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AK4--ZCCHC11	4	2	AK4	2004	chr1:65614235:+	ZCCHC11	34329	chr1:52943554:-	ONLY_REF_SPLICE	YES	4	131	0.6	0.04	0.0624	0.0312	AK4->adenylate_kinase_4,chr1:65613232-65697828:+,ZCCHC11->chr1:52873954-53019159:-,zinc_finger_CCHC-type_containing_11	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.6	0.0936	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACOXL--BCL2L11	1	13	ACOXL	11562	chr2:111598982:+	BCL2L11	40569	chr2:111902065:+	ONLY_REF_SPLICE	NO	48	55	0.23	0.2	0.0156	0.2028	NEIGHBORS[1156],ACOXL->acyl-CoA_oxidase-like,chr2:111490150-111875799:+,BCL2L11->BCL2_like_11,Oncogene{Bushman},chr2:111876955-111926024:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.23	0.2184	FALSE	0	0	0	1	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	1	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	10	0	0.33	1	0.0624	0.0156	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.078	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	1	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0624	0.0156	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.078	FALSE	462	80	0	856	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAWR--RPS11P6	4	1	PAWR	2369	chr12:80083509:-	RPS11P6	31133	chr12:64782813:+	ONLY_REF_SPLICE	YES	44	0	0.1	1	0.0624	0.0156	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RPS11P6->chr12:64616117-64790845:+,ribosomal_protein_S11_pseudogene_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0468	0.078	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1248	FALSE	407	2205	196	549	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0468	0.078	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1248	FALSE	515	4851	409	746	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AP000345.1	3	4	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0468	0.0624	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.1092	TRUE	0	8	0	37	1	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAND1--ACSS3	2	8	CAND1	7809	chr12:67691443:+	ACSS3	29482	chr12:81416162:+	ONLY_REF_SPLICE	YES	246	0	0.04	1	0.0312	0.1248	{Klijn_CCL:Lymphoid=1},CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1,ACSS3->acyl-CoA_synthetase_short-chain_family_member_3,chr12:81331594-81650533:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.156	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	4	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0.0624	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1092	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	4	MT-CO3	1181	chrM:9387:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	10	0	0.41	1	0.0468	0.0624	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	1	0.1092	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0624	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0624	FALSE	344	821	44	306	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0624	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0624	FALSE	499	1288	110	792	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCK2--LPHN3	4	0	NCK2	1242	chr2:106361595:+	LPHN3	20628	chr4:62542544:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0624	0	NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+,LPHN3->chr4:62066976-62944053:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0624	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	3	MT-CO3	1020	chrM:9226:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	NO	0	12	1	0.33	0.0468	0.0468	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.0936	FALSE	189	492	56	216	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	2	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0.1092	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1404	FALSE	93	270	15	244	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AK4--ZCCHC11	3	2	AK4	2004	chr1:65614235:+	ZCCHC11	33155	chr1:52947268:-	INCL_NON_REF_SPLICE	YES	4	130	0.56	0.04	0.0468	0.0312	AK4->adenylate_kinase_4,chr1:65613232-65697828:+,ZCCHC11->chr1:52873954-53019159:-,zinc_finger_CCHC-type_containing_11	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.56	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACOXL--BCL2L11	1	9	ACOXL	10527	chr2:111562972:+	BCL2L11	42938	chr2:111907621:+	ONLY_REF_SPLICE	NO	55	49	0.15	0.17	0.0156	0.1404	NEIGHBORS[1156],ACOXL->acyl-CoA_oxidase-like,chr2:111490150-111875799:+,BCL2L11->BCL2_like_11,Oncogene{Bushman},chr2:111876955-111926024:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.17	0.156	FALSE	0	0	0	2	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	1	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	26	0	0.13	1	0.0468	0.0156	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.0624	FALSE	344	827	44	306	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	2	4	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0312	0.0624	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0936	FALSE	0	24	0	62	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0468	FALSE	499	1288	110	792	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0468	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0468	FALSE	292	1546	117	613	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0156	0.0936	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1092	FALSE	467	2173	244	435	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAML2--MTMR2	2	1	MAML2	2798	chr11:96074547:-	MTMR2	19941	chr11:95621425:-	ONLY_REF_SPLICE	YES	1	25	0.75	0.11	0.0312	0.0156	NEIGHBORS[51283],MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,MTMR2->chr11:95566046-95658479:-,myotubularin_related_protein_2	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.75	0.0468	FALSE	0	1	0	2	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAML2--MTMR2	2	1	MAML2	2798	chr11:96074547:-	MTMR2	17731	chr11:95647476:-	ONLY_REF_SPLICE	YES	1	24	0.75	0.11	0.0312	0.0156	NEIGHBORS[51283],MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,MTMR2->chr11:95566046-95658479:-,myotubularin_related_protein_2	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.75	0.0468	FALSE	0	0	0	2	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARF1--BMI1	2	0	ARF1	1106	chr1:228270466:+	BMI1	14095	chr10:22615360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	GTEx&tcga_normals:1/3694=0.03%,ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM65A--TRAF3	2	0	FAM65A	2823	chr16:67562817:+	TRAF3	27327	chr14:103352526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	FAM65A->chr16:67552321-67580691:+,family_with_sequence_similarity_65_member_A,TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	1	4	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0156	0.0624	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.078	FALSE	0	26	0	50	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MARS--R3HDM2	2	0	MARS	13325	chr12:57906747:+	R3HDM2	29486	chr12:57690334:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	LOCAL_INVERSION:+:-:[44440],MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase,R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFWD3--PMFBP1	2	0	RFWD3	9064	chr16:74678260:-	PMFBP1	26694	chr16:72205167:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	RFWD3->chr16:74655292-74700779:-,ring_finger_and_WD_repeat_domain_3,PMFBP1->chr16:72146056-72210777:-,polyamine_modulated_factor_1_binding_protein_1	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--ITGB3BP	1	1	DANCR	1530	chr4:53579126:+	ITGB3BP	18619	chr1:63920639:-	ONLY_REF_SPLICE	YES	398	161	0.01	0.01	0.0156	0.0156	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0312	FALSE	0	0	0	9	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX5--FGFR3	1	1	DDX5	3124	chr17:62502194:-	FGFR3	14322	chr4:1800981:+	ONLY_REF_SPLICE	YES	1566	75	0	0.03	0.0156	0.0156	DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-,FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0312	FALSE	0	0	0	1	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGF14-IT1--FGF14	1	1	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0156	0.0156	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0312	TRUE	71	201	23	28	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HEXA--RPLP1	1	1	HEXA	19104	chr15:72637787:-	RPLP1	26440	chr15:69747509:+	ONLY_REF_SPLICE	NO	275	3394	0.01	0	0.0156	0.0156	HEXA->chr15:72635775-72668817:-,hexosaminidase_subunit_alpha,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0312	FALSE	0	0	0	1	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0156	0.0156	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0312	FALSE	125	705	46	456	0	FALSE	ACH-000714
KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSTK--WDR11	1	1	PSTK	1188	chr10:124714084:+	WDR11	40562	chr10:122659541:+	ONLY_REF_SPLICE	YES	1	147	0.67	0.01	0.0156	0.0156	PSTK->chr10:124713897-124757029:+,phosphoseryl-tRNA_kinase,WDR11->Oncogene{Bushman},WD_repeat_domain_11,chr10:122610687-122669036:+	KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.67	0.0312	FALSE	0	0	0	1	0	FALSE	ACH-000714
A498_KIDNEY	TIMM23B--LINC00843	52	10	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6627	0.1274	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	A498_KIDNEY	1	1	0.7901	TRUE	508	994	45	981	0	FALSE	ACH-000555
A498_KIDNEY	CTD-2547E10.2--CTB-31N19.2	35	14	CTD-2547E10.2	1617	chr16:21531149:-	CTB-31N19.2	32575	chr16:21561694:-	ONLY_REF_SPLICE	YES	6	0	0.89	1	0.4461	0.1784	LOCAL_REARRANGEMENT:-:[12501],CTD-2547E10.2->chr16:21458004-21531765:-,CTB-31N19.2->chr16:21544266-21561694:-	A498_KIDNEY	0.89	1	0.6245	TRUE	0	0	0	2	0	TRUE	ACH-000555
A498_KIDNEY	MT-TA--MT-TC	35	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4461	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A498_KIDNEY	1	1	0.4461	FALSE	462	80	0	856	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	27	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	17363	3	0	0.91	0.3441	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	0.91	0.3696	FALSE	230	193	14	283	0	FALSE	ACH-000555
A498_KIDNEY	TIMM23--RP11-464F9.1	27	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	262	1	0.1	0.97	0.3441	0.0127	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	A498_KIDNEY	0.1	0.97	0.3568	TRUE	519	3926	326	965	0	FALSE	ACH-000555
A498_KIDNEY	KANSL1--ARL17B	21	12	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	25	30	0.57	0.52	0.2676	0.1529	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	A498_KIDNEY	0.52	0.57	0.4205	TRUE	181	1564	124	196	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND6--MT-TE	18	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2294	0.1529	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A498_KIDNEY	0.97	1	0.3823	FALSE	499	1288	110	792	0	FALSE	ACH-000555
A498_KIDNEY	USP34--CCT4	20	4	USP34	1120	chr2:61697785:-	CCT4	78239	chr2:62112207:-	ONLY_REF_SPLICE	YES	3	986	0.89	0.02	0.2549	0.051	GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Sarcomatoid=1,Skin=1,Kidney=1,Lymphoid=1},USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CCT4->chaperonin_containing_TCP1_subunit_4,chr2:62095224-62115939:-	A498_KIDNEY	0.02	0.89	0.3059	TRUE	0	1	0	1	1	FALSE	ACH-000555
A498_KIDNEY	PIEZO1--APRT	18	6	PIEZO1	1311	chr16:88851309:-	APRT	30236	chr16:88876964:-	ONLY_REF_SPLICE	YES	6	770	0.8	0.03	0.2294	0.0765	{Klijn_CCL:Kidney=1},LOCAL_REARRANGEMENT:-:[24128],PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1,APRT->adenine_phosphoribosyltransferase,chr16:88875747-88878352:-	A498_KIDNEY	0.03	0.8	0.3059	TRUE	0	0	0	1	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO2	17	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	78	1	0.23	0.96	0.2167	0.0765	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A498_KIDNEY	0.23	0.96	0.2932	FALSE	59	21	0	114	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	17	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	20248	4	0	0.83	0.2167	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	0.83	0.2422	FALSE	231	205	14	283	0	FALSE	ACH-000555
A498_KIDNEY	AL589743.1--RP11-536C10.17	17	1	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	12	0	0.6	1	0.2167	0.0127	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	A498_KIDNEY	0.6	1	0.2294	TRUE	0	33	0	45	33	FALSE	ACH-000555
A498_KIDNEY	AP000525.9--LA16c-60G3.6	17	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	12	0	0.6	1	0.2167	0.0127	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	A498_KIDNEY	0.6	1	0.2294	TRUE	0	42	0	133	42	FALSE	ACH-000555
A498_KIDNEY	MT-ND6--MT-TE	16	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2039	0.0382	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A498_KIDNEY	1	1	0.2421	FALSE	499	1288	110	792	0	FALSE	ACH-000555
A498_KIDNEY	SH2B2--CUX1	14	3	SH2B2	2903	chr7:101944563:+	CUX1	64578	chr7:101925132:+	ONLY_REF_SPLICE	YES	1	113	0.94	0.13	0.1784	0.0382	LOCAL_REARRANGEMENT:+:[1156],SH2B2->Oncogene{Bushman},SH2B_adaptor_protein_2,chr7:101928405-101962178:+,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	A498_KIDNEY	0.13	0.94	0.2166	TRUE	0	0	0	1	0	TRUE	ACH-000555
A498_KIDNEY	NRIP1--AF127936.7	11	5	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1402	0.0637	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A498_KIDNEY	0.94	1	0.2039	FALSE	292	1546	117	613	0	FALSE	ACH-000555
A498_KIDNEY	MT-TA--MT-TC	12	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1529	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A498_KIDNEY	1	1	0.1529	FALSE	462	80	0	856	0	FALSE	ACH-000555
A498_KIDNEY	INVS--TGFBR1	11	2	INVS	15823	chr9:103009069:+	TGFBR1	34428	chr9:101894791:+	ONLY_REF_SPLICE	YES	29	20	0.31	0.39	0.1402	0.0255	{Klijn_CCL:Kidney=1},INVS->chr9:102861538-103063282:+,inversin,TGFBR1->Oncogene{Bushman},chr9:101866320-101916474:+,transforming_growth_factor_beta_receptor_1	A498_KIDNEY	0.31	0.39	0.1657	TRUE	0	0	0	1	0	TRUE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO2	9	7	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	79	1	0.17	0.94	0.1147	0.0892	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A498_KIDNEY	0.17	0.94	0.2039	FALSE	59	21	0	114	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND6--MT-TE	10	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1274	0.0382	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A498_KIDNEY	1	1	0.1656	FALSE	499	1288	110	792	0	FALSE	ACH-000555
A498_KIDNEY	HPCAL1--MT-CO3	10	2	HPCAL1	5340	chr2:10537030:+	MT-CO3	17735	chrM:9278:+	INCL_NON_REF_SPLICE	YES	55	2	0.18	0.86	0.1274	0.0255	HPCAL1->chr2:10443015-10567743:+,hippocalcin_like_1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	A498_KIDNEY	0.18	0.86	0.1529	FALSE	0	0	0	5	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	10	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17326	4	0	0.75	0.1274	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	0.75	0.1529	FALSE	230	198	14	283	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO1	10	1	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	15739	31315	0	0	0.1274	0.0127	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A498_KIDNEY	0	0	0.1401	FALSE	183	104	9	328	0	FALSE	ACH-000555
A498_KIDNEY	RP11-123O10.4--GRIP1	9	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1147	0.0255	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	A498_KIDNEY	1	1	0.1402	FALSE	416	2512	207	587	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO1	9	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1147	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A498_KIDNEY	1	1	0.1147	FALSE	183	104	9	328	0	FALSE	ACH-000555
A498_KIDNEY	RPH3AL--VPS53	9	0	RPH3AL	1058	chr17:235988:-	VPS53	52156	chr17:505136:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1147	0	RPH3AL->chr17:62293-236045:-,rabphilin_3A-like_(without_C2_domains),VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-	A498_KIDNEY	1	1	0.1147	TRUE	0	0	0	1	0	TRUE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO2	6	7	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	78	1	0.14	0.93	0.0765	0.0892	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A498_KIDNEY	0.14	0.93	0.1657	FALSE	59	21	0	114	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO2	6	7	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	78	1	0.14	0.93	0.0765	0.0892	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A498_KIDNEY	0.14	0.93	0.1657	FALSE	59	21	0	114	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	6	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	21959	4	0	0.76	0.0765	0.0892	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	0.76	0.1657	FALSE	231	217	16	283	0	FALSE	ACH-000555
A498_KIDNEY	RP11-444D3.1--SOX5	7	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0892	0.0127	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	A498_KIDNEY	1	1	0.1019	TRUE	477	1352	189	275	0	FALSE	ACH-000555
A498_KIDNEY	RP11-680G10.1--GSE1	7	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0892	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A498_KIDNEY	1	1	0.0892	TRUE	458	1351	185	561	0	FALSE	ACH-000555
A498_KIDNEY	RP11-680G10.1--GSE1	7	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0892	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A498_KIDNEY	1	1	0.0892	TRUE	465	1949	224	605	0	FALSE	ACH-000555
A498_KIDNEY	RP11-96H19.1--RP11-446N19.1	6	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0765	0.051	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A498_KIDNEY	1	1	0.1275	FALSE	515	4851	409	746	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO2	6	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	59	1	0.12	0.89	0.0765	0.0255	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A498_KIDNEY	0.12	0.89	0.102	FALSE	59	21	0	114	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND6--MT-TE	3	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0.1784	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A498_KIDNEY	1	1	0.2166	FALSE	499	1288	110	792	0	FALSE	ACH-000555
A498_KIDNEY	ACTN4--MT-CO1	6	1	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	1195	32586	0.01	0	0.0765	0.0127	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A498_KIDNEY	0	0.01	0.0892	FALSE	0	0	0	30	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	5	5	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	24607	829	0	0.01	0.0637	0.0637	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	0.01	0.1274	FALSE	231	217	16	283	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	3	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	19271	217	0	0.06	0.0382	0.1529	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	0.06	0.1911	FALSE	231	217	16	283	0	FALSE	ACH-000555
A498_KIDNEY	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0765	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A498_KIDNEY	1	1	0.0765	FALSE	462	80	0	856	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO2	4	7	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	81	1	0.12	0.92	0.051	0.0892	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A498_KIDNEY	0.12	0.92	0.1402	FALSE	59	21	0	114	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	4	7	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	21516	0	0	1	0.051	0.0892	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	1	0.1402	FALSE	231	217	16	283	0	FALSE	ACH-000555
A498_KIDNEY	PIEZO1--APRT	4	7	PIEZO1	1311	chr16:88851309:-	APRT	29136	chr16:88878064:-	ONLY_REF_SPLICE	YES	6	383	0.65	0.03	0.051	0.0892	{Klijn_CCL:Kidney=1},LOCAL_REARRANGEMENT:-:[24128],PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1,APRT->adenine_phosphoribosyltransferase,chr16:88875747-88878352:-	A498_KIDNEY	0.03	0.65	0.1402	TRUE	0	0	0	1	0	FALSE	ACH-000555
A498_KIDNEY	APP--MT-ND2	5	2	APP	11652	chr21:27394197:-	MT-ND2	33030	chrM:5324:+	INCL_NON_REF_SPLICE	YES	2239	6506	0	0	0.0637	0.0255	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	A498_KIDNEY	0	0	0.0892	FALSE	0	1	0	51	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO2	5	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	NO	25	1	0.22	0.88	0.0637	0.0255	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A498_KIDNEY	0.22	0.88	0.0892	FALSE	59	21	0	114	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO2	5	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	25	1	0.22	0.88	0.0637	0.0255	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A498_KIDNEY	0.22	0.88	0.0892	FALSE	59	21	0	114	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	5	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17446	73	0	0.09	0.0637	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	0.09	0.0892	FALSE	230	198	14	283	0	FALSE	ACH-000555
A498_KIDNEY	RP11-319G9.5--WWOX	5	2	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	4	1	0.64	0.0637	0.0255	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	A498_KIDNEY	0.64	1	0.0892	FALSE	154	425	28	76	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO1	5	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	16604	33008	0	0	0.0637	0.0127	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A498_KIDNEY	0	0	0.0764	FALSE	183	104	9	328	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	4	5	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	22818	0	0	1	0.051	0.0637	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	1	0.1147	FALSE	231	217	16	283	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	3	8	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	21521	0	0	1	0.0382	0.102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	1	0.1402	FALSE	231	217	16	283	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO2	3	7	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	78	1	0.11	0.91	0.0382	0.0892	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A498_KIDNEY	0.11	0.91	0.1274	FALSE	59	21	0	114	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	4	3	MT-ND4	1452	chrM:11211:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	23545	4	0	0.64	0.051	0.0382	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	0.64	0.0892	FALSE	231	217	16	283	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	3	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	YES	21959	957	0	0.01	0.0382	0.0892	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	0.01	0.1274	FALSE	231	217	16	283	0	FALSE	ACH-000555
A498_KIDNEY	NRIP1--AF127936.7	3	7	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.38	1	0.0382	0.0892	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A498_KIDNEY	0.38	1	0.1274	FALSE	125	705	46	456	0	FALSE	ACH-000555
A498_KIDNEY	ALDOA--MT-ND4	4	2	ALDOA	9161	chr16:30078933:+	MT-ND4	15475	chrM:11228:+	INCL_NON_REF_SPLICE	YES	4039	22117	0	0	0.051	0.0255	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	A498_KIDNEY	0	0	0.0765	FALSE	0	0	0	6	0	FALSE	ACH-000555
A498_KIDNEY	CTD-2547E10.2--CTB-31N19.2	4	2	CTD-2547E10.2	1617	chr16:21531149:-	CTB-31N19.2	33694	chr16:21559327:-	ONLY_REF_SPLICE	YES	6	0	0.5	1	0.051	0.0255	LOCAL_REARRANGEMENT:-:[12501],CTD-2547E10.2->chr16:21458004-21531765:-,CTB-31N19.2->chr16:21544266-21561694:-	A498_KIDNEY	0.5	1	0.0765	TRUE	0	0	0	2	0	TRUE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	4	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	21904	0	0	1	0.051	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	1	0.0765	FALSE	231	205	14	283	0	FALSE	ACH-000555
A498_KIDNEY	PIEZO1--APRT	4	2	PIEZO1	1311	chr16:88851309:-	APRT	30644	chr16:88876556:-	ONLY_REF_SPLICE	YES	6	639	0.5	0.01	0.051	0.0255	{Klijn_CCL:Kidney=1},LOCAL_REARRANGEMENT:-:[24128],PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1,APRT->adenine_phosphoribosyltransferase,chr16:88875747-88878352:-	A498_KIDNEY	0.01	0.5	0.0765	FALSE	0	0	0	1	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO1	4	1	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	14932	0	0	1	0.051	0.0127	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A498_KIDNEY	0	1	0.0637	FALSE	182	97	9	327	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	3	5	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	22818	0	0	1	0.0382	0.0637	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	1	0.1019	FALSE	231	217	16	283	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	3	5	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	22899	0	0	1	0.0382	0.0637	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	1	0.1019	FALSE	231	217	16	283	0	FALSE	ACH-000555
A498_KIDNEY	APP--MT-ND2	4	0	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.051	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	A498_KIDNEY	1	1	0.051	FALSE	0	1	0	51	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO1	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5226	chrM:6448:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.051	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A498_KIDNEY	1	1	0.051	FALSE	183	104	9	328	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO1	4	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.051	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A498_KIDNEY	1	1	0.051	FALSE	183	104	9	328	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO2	4	0	MT-ATP6	1072	chrM:8598:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.051	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A498_KIDNEY	1	1	0.051	FALSE	59	21	0	114	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	3	4	MT-ND4	1477	chrM:11236:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22963	4	0	0.64	0.0382	0.051	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	0.64	0.0892	FALSE	231	217	16	283	0	FALSE	ACH-000555
A498_KIDNEY	XXbac-BPG248L24.12--SPP1	4	0	XXbac-BPG248L24.12	1474	chr6:31324897:+	SPP1	5039	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.051	0	XXbac-BPG248L24.12->chr6:31324424-31325414:+,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	A498_KIDNEY	1	1	0.051	TRUE	0	0	0	5	0	TRUE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO2	3	3	MT-ATP6	1124	chrM:8650:+	MT-CO2	4767	chrM:7671:+	INCL_NON_REF_SPLICE	YES	60	0	0.09	1	0.0382	0.0382	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A498_KIDNEY	0.09	1	0.0764	FALSE	59	21	0	114	0	FALSE	ACH-000555
A498_KIDNEY	RP11-120D5.1--MID1	3	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	41	0.86	0.13	0.0382	0.0382	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	A498_KIDNEY	0.13	0.86	0.0764	FALSE	16	356	14	466	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO1	3	2	MT-ATP6	1193	chrM:8719:+	MT-CO1	5315	chrM:6537:+	INCL_NON_REF_SPLICE	YES	18701	31903	0	0	0.0382	0.0255	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A498_KIDNEY	0	0	0.0637	FALSE	183	104	9	328	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO2	3	2	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	56	1	0.08	0.83	0.0382	0.0255	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A498_KIDNEY	0.08	0.83	0.0637	FALSE	59	21	0	114	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO2	3	2	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	25	1	0.17	0.83	0.0382	0.0255	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A498_KIDNEY	0.17	0.83	0.0637	FALSE	59	21	0	114	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	3	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	17363	4	0	0.56	0.0382	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	0.56	0.0637	FALSE	230	193	14	283	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	3	2	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	22872	1668	0	0	0.0382	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	0	0.0637	FALSE	231	205	14	283	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	3	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	NO	17363	0	0	1	0.0382	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	1	0.0637	FALSE	230	193	14	283	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND4--MT-ATP8	3	2	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	21852	1	0	0.83	0.0382	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A498_KIDNEY	0	0.83	0.0637	FALSE	231	205	14	283	0	FALSE	ACH-000555
A498_KIDNEY	APP--MT-ND2	3	0	APP	11619	chr21:27394230:-	MT-ND2	32998	chrM:5292:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	A498_KIDNEY	1	1	0.0382	FALSE	0	1	0	51	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A498_KIDNEY	1	1	0.0382	FALSE	183	104	9	328	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A498_KIDNEY	1	1	0.0382	FALSE	183	104	9	328	0	FALSE	ACH-000555
A498_KIDNEY	MT-ATP6--MT-CO2	3	0	MT-ATP6	1138	chrM:8664:+	MT-CO2	4988	chrM:7892:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A498_KIDNEY	1	1	0.0382	FALSE	59	21	0	114	0	FALSE	ACH-000555
A498_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A498_KIDNEY	1	1	0.0382	FALSE	499	1288	110	792	0	FALSE	ACH-000555
A498_KIDNEY	MT-TA--MT-TC	3	0	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A498_KIDNEY	1	1	0.0382	FALSE	462	80	0	856	0	FALSE	ACH-000555
A498_KIDNEY	NRIP1--AF127936.7	1	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	43	0	0.17	1	0.0127	0.102	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A498_KIDNEY	0.17	1	0.1147	FALSE	164	806	69	479	0	FALSE	ACH-000555
A498_KIDNEY	STIM1--PGAP2	2	3	STIM1	2883	chr11:3877639:+	PGAP2	34387	chr11:3829524:+	ONLY_REF_SPLICE	YES	103	6	0.05	0.45	0.0255	0.0382	LOCAL_REARRANGEMENT:+:[28156],STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1,PGAP2->chr11:3818954-3847601:+,post-GPI_attachment_to_proteins_2	A498_KIDNEY	0.05	0.45	0.0637	TRUE	0	2	0	1	2	TRUE	ACH-000555
A498_KIDNEY	NCOR2--UBC	2	2	NCOR2	21671	chr12:124882665:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	72	119	0.05	0.03	0.0255	0.0255	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	A498_KIDNEY	0.03	0.05	0.051	TRUE	30	26	0	16	0	FALSE	ACH-000555
A498_KIDNEY	AC002066.1--AC073130.1	2	1	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0255	0.0127	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	A498_KIDNEY	0.5	1	0.0382	FALSE	0	1	1	30	0	FALSE	ACH-000555
A498_KIDNEY	GPC6--GPC5	2	1	GPC6	1775	chr13:93879869:+	GPC5	28531	chr13:93518535:+	ONLY_REF_SPLICE	YES	91	0	0.03	1	0.0255	0.0127	HGNC_GENEFAM,PROTCLUST,YOSHIHARA_TCGA_num_samples[HNSC:1|KIRC:1],GPC6->chr13:93879095-95059655:+,glypican_6,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	A498_KIDNEY	0.03	1	0.0382	TRUE	0	3	0	3	3	TRUE	ACH-000555
A498_KIDNEY	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	A498_KIDNEY	1	1	0.0255	TRUE	347	1186	183	220	0	FALSE	ACH-000555
A498_KIDNEY	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	A498_KIDNEY	1	1	0.0255	TRUE	145	312	16	51	0	FALSE	ACH-000555
A498_KIDNEY	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	41	0.6	0.07	0.0127	0.0255	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	A498_KIDNEY	0.07	0.6	0.0382	FALSE	0	48	1	163	0	FALSE	ACH-000555
A498_KIDNEY	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0127	0.0255	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	A498_KIDNEY	1	1	0.0382	FALSE	93	270	15	244	0	FALSE	ACH-000555
A498_KIDNEY	RP11-141M1.3--STARD13	1	2	RP11-141M1.3	5599	chr13:34098375:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	10	0.75	0.23	0.0127	0.0255	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	A498_KIDNEY	0.23	0.75	0.0382	FALSE	9	22	2	16	0	FALSE	ACH-000555
A498_KIDNEY	CRIM1--FEZ2	1	1	CRIM1	18863	chr2:36749456:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	494	216	0	0.01	0.0127	0.0127	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	A498_KIDNEY	0	0.01	0.0254	FALSE	2	2	0	15	0	FALSE	ACH-000555
A498_KIDNEY	NCOR2--UBC	1	1	NCOR2	11484	chr12:124934361:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	64	119	0.03	0.02	0.0127	0.0127	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	A498_KIDNEY	0.02	0.03	0.0254	TRUE	12	15	2	11	0	FALSE	ACH-000555
HPAC_PANCREAS	MT-TA--MT-TC	116	15	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.422	0.1839	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HPAC_PANCREAS	1	1	1.6059	FALSE	462	80	0	856	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TN	88	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0788	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HPAC_PANCREAS	1	1	1.0788	FALSE	369	2501	205	193	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TN	22	82	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2697	1.0052	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HPAC_PANCREAS	1	1	1.2749	FALSE	369	2501	205	193	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TN	25	69	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3065	0.8459	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HPAC_PANCREAS	1	1	1.1524	FALSE	369	2501	205	193	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-ND6--MT-TE	36	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4413	0.049	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAC_PANCREAS	1	1	0.4903	FALSE	499	1288	110	792	0	FALSE	ACH-000270
HPAC_PANCREAS	TIMM23B--LINC00843	32	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.3923	0.2207	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HPAC_PANCREAS	0.98	1	0.613	TRUE	508	994	45	981	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TN	18	55	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2207	0.6742	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HPAC_PANCREAS	1	1	0.8949	FALSE	369	2501	205	193	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-ND6--MT-TE	27	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.331	0.1471	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAC_PANCREAS	0.95	1	0.4781	FALSE	499	1288	110	792	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TC	23	15	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.282	0.1839	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HPAC_PANCREAS	1	1	0.4659	FALSE	462	80	0	856	0	FALSE	ACH-000270
HPAC_PANCREAS	TIMM23--RP11-464F9.1	26	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	105	7	0.21	0.8	0.3187	0.0245	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HPAC_PANCREAS	0.21	0.8	0.3432	TRUE	519	3926	326	965	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TN	20	23	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2452	0.282	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HPAC_PANCREAS	1	1	0.5272	FALSE	369	2501	205	193	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TC	17	20	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2084	0.2452	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HPAC_PANCREAS	1	1	0.4536	FALSE	462	80	0	856	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TN	4	56	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0.6865	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HPAC_PANCREAS	1	1	0.7355	FALSE	369	2501	205	193	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TY	18	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2207	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HPAC_PANCREAS	1	1	0.2207	FALSE	13	214	14	42	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-ND6--MT-TE	15	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1839	0.0613	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAC_PANCREAS	1	1	0.2452	FALSE	499	1288	110	792	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TC	15	5	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1839	0.0613	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HPAC_PANCREAS	1	1	0.2452	FALSE	462	80	0	856	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TN	10	20	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1226	0.2452	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HPAC_PANCREAS	1	1	0.3678	FALSE	369	2501	205	193	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TN	14	1	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1716	0.0123	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HPAC_PANCREAS	1	1	0.1839	FALSE	369	2501	205	193	0	FALSE	ACH-000270
HPAC_PANCREAS	VTI1A--TECTB	11	11	VTI1A	1470	chr10:114207225:+	TECTB	26675	chr10:114053496:+	ONLY_REF_SPLICE	YES	35	0	0.39	1	0.1348	0.1348	VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,TECTB->chr10:114043493-114064793:+,tectorin_beta	HPAC_PANCREAS	0.39	1	0.2696	TRUE	0	0	0	1	0	TRUE	ACH-000270
HPAC_PANCREAS	MT-ND3--MT-ATP8	13	0	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1594	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HPAC_PANCREAS	1	1	0.1594	FALSE	351	233	23	137	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-ND6--MT-TE	5	29	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0613	0.3555	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAC_PANCREAS	1	1	0.4168	FALSE	499	1288	110	792	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TN	12	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1471	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HPAC_PANCREAS	1	1	0.1471	FALSE	369	2501	205	193	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-ND3--MT-ATP8	11	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1348	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HPAC_PANCREAS	1	1	0.1348	FALSE	351	233	23	137	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-ND6--MT-TE	6	18	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0736	0.2207	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAC_PANCREAS	0.92	1	0.2943	FALSE	499	1288	110	792	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TN	7	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0858	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HPAC_PANCREAS	1	1	0.0858	FALSE	369	2501	205	193	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TY	6	0	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0736	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HPAC_PANCREAS	1	1	0.0736	FALSE	13	214	14	42	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TC	4	6	MT-TA	1034	chrM:5622:-	MT-TC	4085	chrM:5811:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0.0736	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HPAC_PANCREAS	1	1	0.1226	FALSE	462	80	0	856	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-ND6--MT-TE	3	9	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0368	0.1103	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAC_PANCREAS	0.92	1	0.1471	FALSE	499	1288	110	792	0	FALSE	ACH-000270
HPAC_PANCREAS	CTCF--RP11-293N14.1	5	0	CTCF	7787	chr16:67655494:+	RP11-293N14.1	21140	chr16:76142240:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0613	0	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,RP11-293N14.1->chr16:76141181-76181704:-	HPAC_PANCREAS	1	1	0.0613	TRUE	0	0	0	1	0	TRUE	ACH-000270
HPAC_PANCREAS	MT-ND3--MT-ATP8	5	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0613	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HPAC_PANCREAS	1	1	0.0613	FALSE	351	233	23	137	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TN	5	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0613	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HPAC_PANCREAS	1	1	0.0613	FALSE	369	2501	205	193	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TN	5	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0613	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HPAC_PANCREAS	1	1	0.0613	FALSE	369	2501	205	193	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TY	5	0	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0613	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HPAC_PANCREAS	1	1	0.0613	FALSE	13	214	14	42	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-ND3--MT-ATP8	4	2	MT-ND3	1290	chrM:10348:+	MT-ATP8	4418	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0.0245	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HPAC_PANCREAS	1	1	0.0735	FALSE	351	233	23	137	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAC_PANCREAS	1	1	0.049	FALSE	499	1288	110	792	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TY	4	0	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HPAC_PANCREAS	1	1	0.049	FALSE	13	214	14	42	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-ND3--MT-ATP8	3	2	MT-ND3	1230	chrM:10288:+	MT-ATP8	4465	chrM:8484:+	INCL_NON_REF_SPLICE	YES	1053	803	0	0.01	0.0368	0.0245	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HPAC_PANCREAS	0	0.01	0.0613	FALSE	351	233	23	137	0	FALSE	ACH-000270
HPAC_PANCREAS	RP11-114H23.1--RP11-114H23.2	3	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0368	0.0245	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HPAC_PANCREAS	1	1	0.0613	FALSE	81	155	12	160	0	FALSE	ACH-000270
HPAC_PANCREAS	HSPA5--GAPVD1	2	5	HSPA5	4190	chr9:128000420:-	GAPVD1	16153	chr9:128061169:+	ONLY_REF_SPLICE	YES	1064	14	0.01	0.33	0.0245	0.0613	LOCAL_INVERSION:-:+:[20464],HSPA5->Oncogene{Bushman},chr9:127997132-128003609:-,heat_shock_protein_family_A_(Hsp70)_member_5,GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+	HPAC_PANCREAS	0.01	0.33	0.0858	FALSE	0	0	0	1	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-ND6--MT-TE	3	1	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0.0123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAC_PANCREAS	1	1	0.0491	FALSE	499	1288	110	792	0	FALSE	ACH-000270
HPAC_PANCREAS	NRIP1--AF127936.7	3	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.31	1	0.0368	0.0123	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HPAC_PANCREAS	0.31	1	0.0491	FALSE	164	806	69	479	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-ND3--MT-ATP8	3	0	MT-ND3	1103	chrM:10161:+	MT-ATP8	4388	chrM:8407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HPAC_PANCREAS	1	1	0.0368	FALSE	351	233	23	137	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAC_PANCREAS	1	1	0.0368	FALSE	499	1288	110	792	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TY	3	0	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HPAC_PANCREAS	1	1	0.0368	FALSE	13	214	14	42	0	FALSE	ACH-000270
HPAC_PANCREAS	MT-TA--MT-TY	3	0	MT-TA	1056	chrM:5600:-	MT-TY	4067	chrM:5894:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HPAC_PANCREAS	1	1	0.0368	FALSE	13	214	14	42	0	FALSE	ACH-000270
HPAC_PANCREAS	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0368	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HPAC_PANCREAS	1	1	0.0368	FALSE	292	1546	117	613	0	FALSE	ACH-000270
HPAC_PANCREAS	RP11-114H23.1--RP11-114H23.2	2	2	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0.0245	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HPAC_PANCREAS	1	1	0.049	FALSE	5	9	0	20	0	FALSE	ACH-000270
HPAC_PANCREAS	FGFR2--COL14A1	2	1	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	39	0	0.07	1	0.0245	0.0123	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	HPAC_PANCREAS	0.07	1	0.0368	TRUE	0	0	0	32	0	FALSE	ACH-000270
HPAC_PANCREAS	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0.0123	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HPAC_PANCREAS	1	1	0.0368	TRUE	62	24	1	171	0	FALSE	ACH-000270
HPAC_PANCREAS	ARHGEF28--TBCA	2	0	ARHGEF28	1165	chr5:72922147:+	TBCA	58402	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	ARHGEF28->Rho_guanine_nucleotide_exchange_factor_28,chr5:72921983-73237818:+,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	HPAC_PANCREAS	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000270
HPAC_PANCREAS	BICD1--FGD4	2	0	BICD1	12831	chr12:32490640:+	FGD4	33337	chr12:32717071:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	NEIGHBORS[15896],BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+	HPAC_PANCREAS	1	1	0.0245	FALSE	0	0	0	2	0	FALSE	ACH-000270
HPAC_PANCREAS	CASD1--CHMP1A	2	0	CASD1	19451	chr7:94183887:+	CHMP1A	29673	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	CASD1->CAS1_domain_containing_1,chr7:94138531-94186331:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HPAC_PANCREAS	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000270
HPAC_PANCREAS	CDC42SE2--NDUFV1	2	0	CDC42SE2	6369	chr5:130651837:+	NDUFV1	21677	chr11:67375867:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,NDUFV1->NADH:ubiquinone_oxidoreductase_core_subunit_V1,chr11:67374323-67380006:+	HPAC_PANCREAS	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000270
LN464_CENTRAL_NERVOUS_SYSTEM	RHPN2--INSL3	152	27	RHPN2	1105	chr19:33555690:-	INSL3	24224	chr19:17927868:-	ONLY_REF_SPLICE	YES	1	6	0.99	0.97	1.6221	0.2881	RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2,INSL3->chr19:17927321-17932383:-,insulin_like_3	LN464_CENTRAL_NERVOUS_SYSTEM	0.97	0.99	1.9102	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	TXNRD1--CHST11	135	87	TXNRD1	17935	chr12:104709674:+	CHST11	40027	chr12:105150727:+	ONLY_REF_SPLICE	YES	436	89	0.34	0.71	1.4407	0.9285	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.34	0.71	2.3692	TRUE	0	0	0	2	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	85	65	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9071	0.6937	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	1.6008	TRUE	508	994	45	981	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SNRPD2--ZNF266	73	1	SNRPD2	1683	chr19:46195145:-	ZNF266	12331	chr19:9530894:-	ONLY_REF_SPLICE	YES	15	29	0.83	0.72	0.7791	0.0107	SNRPD2->chr19:46190712-46195827:-,small_nuclear_ribonucleoprotein_D2_polypeptide,ZNF266->chr19:9523272-9546254:-,zinc_finger_protein_266	LN464_CENTRAL_NERVOUS_SYSTEM	0.72	0.83	0.7898	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	58	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	504	1	0.11	0.98	0.619	0.0534	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.11	0.98	0.6724	TRUE	519	3926	326	965	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NAV1--IPO9	39	41	NAV1	4638	chr1:201618553:+	IPO9	50236	chr1:201816407:+	ONLY_REF_SPLICE	YES	0	92	1	0.47	0.4162	0.4376	NEIGHBORS[2167],NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,IPO9->chr1:201798269-201853422:+,importin_9	LN464_CENTRAL_NERVOUS_SYSTEM	0.47	1	0.8538	FALSE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RHPN2--INSL3	41	29	RHPN2	1105	chr19:33555690:-	INSL3	22022	chr19:17932384:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.4376	0.3095	RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2,INSL3->chr19:17927321-17932383:-,insulin_like_3	LN464_CENTRAL_NERVOUS_SYSTEM	0.99	1	0.7471	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	TMEM170A--BCAR1	37	23	TMEM170A	4226	chr16:75485636:-	BCAR1	24931	chr16:75276988:-	ONLY_REF_SPLICE	YES	35	10	0.63	0.86	0.3949	0.2455	TMEM170A->chr16:75476952-75499395:-,transmembrane_protein_170A,BCAR1->BCAR1,_Cas_family_scaffolding_protein,chr16:75262928-75301951:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.63	0.86	0.6404	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MEGF8--HSH2D	36	20	MEGF8	6424	chr19:42841358:+	HSH2D	37747	chr19:16254442:+	ONLY_REF_SPLICE	YES	39	0	0.59	1	0.3842	0.2134	MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8,HSH2D->chr19:16244838-16269386:+,hematopoietic_SH2_domain_containing	LN464_CENTRAL_NERVOUS_SYSTEM	0.59	1	0.5976	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	38	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4055	0.0747	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.4802	FALSE	462	80	0	856	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ARFGEF2--BCAS1	34	19	ARFGEF2	26357	chr20:47626941:+	BCAS1	47358	chr20:52645511:-	ONLY_REF_SPLICE	YES	108	0	0.33	1	0.3628	0.2028	ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.5656	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ZNF266--ADCK4	31	31	ZNF266	2911	chr19:9544344:-	ADCK4	20003	chr19:41211352:-	ONLY_REF_SPLICE	YES	26	35	0.7	0.64	0.3308	0.3308	ZNF266->chr19:9523272-9546254:-,zinc_finger_protein_266,ADCK4->aarF_domain_containing_kinase_4,chr19:41197434-41224112:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.64	0.7	0.6616	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NFIX--REEP6	33	18	NFIX	4898	chr19:13136366:+	REEP6	24883	chr19:1497173:+	ONLY_REF_SPLICE	YES	49	19	0.51	0.73	0.3522	0.1921	NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,REEP6->chr19:1491165-1497926:+,receptor_accessory_protein_6	LN464_CENTRAL_NERVOUS_SYSTEM	0.51	0.73	0.5443	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	5	112	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	69	0	0.63	1	0.0534	1.1953	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN464_CENTRAL_NERVOUS_SYSTEM	0.63	1	1.2487	FALSE	344	827	44	306	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	5	109	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	NO	49	0	0.7	1	0.0534	1.1633	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN464_CENTRAL_NERVOUS_SYSTEM	0.7	1	1.2167	FALSE	344	826	44	306	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	111	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	39	0	0.75	1	0.0427	1.1846	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN464_CENTRAL_NERVOUS_SYSTEM	0.75	1	1.2273	FALSE	344	826	44	306	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	112	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	67	0	0.63	1	0.032	1.1953	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN464_CENTRAL_NERVOUS_SYSTEM	0.63	1	1.2273	FALSE	344	827	44	306	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	112	MT-ND4	1213	chrM:10972:+	MT-ND4L	5376	chrM:10467:+	INCL_NON_REF_SPLICE	YES	66	0	0.64	1	0.032	1.1953	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN464_CENTRAL_NERVOUS_SYSTEM	0.64	1	1.2273	FALSE	344	826	44	306	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	109	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	35	0	0.76	1	0.032	1.1633	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN464_CENTRAL_NERVOUS_SYSTEM	0.76	1	1.1953	FALSE	344	826	44	306	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NUBP2--RP11-296I10.3	30	0	NUBP2	1136	chr16:1833037:+	RP11-296I10.3	13195	chr16:70194214:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3202	0	NUBP2->chr16:1832902-1839192:+,nucleotide_binding_protein_2,RP11-296I10.3->chr16:70190243-70207351:-	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.3202	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RALGAPB--RPRD1B	25	14	RALGAPB	6024	chr20:37128276:+	RPRD1B	53019	chr20:36718128:+	ONLY_REF_SPLICE	YES	61	132	0.39	0.23	0.2668	0.1494	RALGAPB->Ral_GTPase_activating_protein_non-catalytic_beta_subunit,chr20:37101459-37207504:+,RPRD1B->chr20:36661948-36720768:+,regulation_of_nuclear_pre-mRNA_domain_containing_1B	LN464_CENTRAL_NERVOUS_SYSTEM	0.23	0.39	0.4162	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	28	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2988	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.2988	TRUE	7	10	0	216	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	LIMD1--LARS2	23	13	LIMD1	7325	chr3:45677743:+	LARS2	50725	chr3:45583321:+	ONLY_REF_SPLICE	YES	8	102	0.82	0.26	0.2455	0.1387	LOCAL_REARRANGEMENT:+:[5973],LIMD1->LIM_domains_containing_1,Oncogene{Bushman},chr3:45596886-45727830:+,LARS2->chr3:45429998-45590913:+,leucyl-tRNA_synthetase_2,_mitochondrial	LN464_CENTRAL_NERVOUS_SYSTEM	0.26	0.82	0.3842	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	AP1G1--CYB5B	24	8	AP1G1	24407	chr16:71779047:-	CYB5B	38740	chr16:69481053:+	ONLY_REF_SPLICE	YES	94	761	0.25	0.04	0.2561	0.0854	AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	LN464_CENTRAL_NERVOUS_SYSTEM	0.04	0.25	0.3415	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RP11-219G17.4--PLA2G6	25	0	RP11-219G17.4	2765	chr17:76267333:-	PLA2G6	39371	chr22:38509661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2668	0	GTEx_FI:{Testis=[count:23=pct:21.9],Brain=[count:18=pct:2.7],Nerve=[count:11=pct:6.5],Thyroid=[count:8=pct:4.5],Ovary=[count:6=pct:11.3],Colon=[count:5=pct:2.6],Pancreas=[count:3=pct:1.7],Uterus=[count:2=pct:4.7],Spleen=[count:2=pct:1.8],Blood=[count:2=pct:1.1],Prostate=[count:2=pct:3.3],Vagina=[count:1=pct:1.8],Blood_Vessel=[count:1=pct:0.3],Muscle=[count:1=pct:0.4],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},RP11-219G17.4->chr17:76257430-76274573:-,PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.2668	TRUE	63	15	0	9	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	GPHN--MPP5	22	8	GPHN	2185	chr14:66975309:+	MPP5	41459	chr14:67736418:+	ONLY_REF_SPLICE	YES	27	15	0.53	0.67	0.2348	0.0854	NEIGHBORS[59306],GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5	LN464_CENTRAL_NERVOUS_SYSTEM	0.53	0.67	0.3202	FALSE	0	1	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	5	67	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	12	0	0.86	1	0.0534	0.715	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN464_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.7684	FALSE	344	821	44	306	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	TMEM170A--BCAR1	15	25	TMEM170A	4295	chr16:75485567:-	BCAR1	24931	chr16:75276988:-	ONLY_REF_SPLICE	YES	38	10	0.51	0.8	0.1601	0.2668	TMEM170A->chr16:75476952-75499395:-,transmembrane_protein_170A,BCAR1->BCAR1,_Cas_family_scaffolding_protein,chr16:75262928-75301951:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.51	0.8	0.4269	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ZFYVE9--MCOLN2	20	4	ZFYVE9	3242	chr1:52698948:+	MCOLN2	31107	chr1:85424385:-	ONLY_REF_SPLICE	YES	21	30	0.53	0.44	0.2134	0.0427	ZFYVE9->chr1:52608046-52812358:+,zinc_finger_FYVE-type_containing_9,MCOLN2->chr1:85391268-85462796:-,mucolipin_2	LN464_CENTRAL_NERVOUS_SYSTEM	0.44	0.53	0.2561	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	19	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	9828	27042	0	0	0.2028	0.0107	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN464_CENTRAL_NERVOUS_SYSTEM	0	0	0.2135	FALSE	183	104	9	328	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NFIC--ZNF14	18	1	NFIC	2241	chr19:3366664:+	ZNF14	26819	chr19:19825296:-	ONLY_REF_SPLICE	YES	4	8	0.83	0.7	0.1921	0.0107	NFIC->Oncogene{Bushman},chr19:3359561-3469215:+,nuclear_factor_I_C,ZNF14->chr19:19821280-19843906:-,zinc_finger_protein_14	LN464_CENTRAL_NERVOUS_SYSTEM	0.7	0.83	0.2028	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	TOP1--ZHX3	13	18	TOP1	3859	chr20:39704934:+	ZHX3	30666	chr20:39897723:-	ONLY_REF_SPLICE	YES	377	1	0.08	0.97	0.1387	0.1921	LOCAL_INVERSION:+:-:[53961],TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I,ZHX3->chr20:39807088-39946312:-,zinc_fingers_and_homeoboxes_3	LN464_CENTRAL_NERVOUS_SYSTEM	0.08	0.97	0.3308	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	17	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9973	27997	0	0	0.1814	0.0107	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN464_CENTRAL_NERVOUS_SYSTEM	0	0	0.1921	FALSE	183	104	9	328	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	16	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.1708	0.0427	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.2135	FALSE	292	1546	117	613	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MYO5A--FAM214A	13	5	MYO5A	1271	chr15:52820977:-	FAM214A	70897	chr15:52885933:-	ONLY_REF_SPLICE	YES	5	15	0.78	0.55	0.1387	0.0534	LOCAL_REARRANGEMENT:-:[52267],MYO5A->chr15:52599480-52821247:-,myosin_VA,FAM214A->chr15:52873514-53002014:-,family_with_sequence_similarity_214_member_A	LN464_CENTRAL_NERVOUS_SYSTEM	0.55	0.78	0.1921	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MEGF8--HSH2D	8	24	MEGF8	7579	chr19:42847783:+	HSH2D	35385	chr19:16244837:+	INCL_NON_REF_SPLICE	YES	38	0	0.46	1	0.0854	0.2561	MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8,HSH2D->chr19:16244838-16269386:+,hematopoietic_SH2_domain_containing	LN464_CENTRAL_NERVOUS_SYSTEM	0.46	1	0.3415	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	6	30	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	13097	0	0	1	0.064	0.3202	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN464_CENTRAL_NERVOUS_SYSTEM	0	1	0.3842	FALSE	328	800	43	304	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SUMO3--TSPEAR	11	6	SUMO3	1832	chr21:46237863:-	TSPEAR	12885	chr21:45987889:-	ONLY_REF_SPLICE	YES	143	0	0.11	1	0.1174	0.064	NEIGHBORS[94037],SUMO3->chr21:46225532-46238694:-,small_ubiquitin-like_modifier_3,TSPEAR->chr21:45917775-46131495:-,thrombospondin-type_laminin_G_domain_and_EAR_repeats	LN464_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.1814	FALSE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	WWOX--CA5A	11	3	WWOX	6262	chr16:78149051:+	CA5A	36393	chr16:87938510:-	ONLY_REF_SPLICE	YES	15	0	0.48	1	0.1174	0.032	WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,CA5A->carbonic_anhydrase_5A,chr16:87921625-87970135:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.48	1	0.1494	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SLC7A5--RP11-264M12.2	2	38	SLC7A5	9399	chr16:87870104:-	RP11-264M12.2	17581	chr16:77776897:-	ONLY_REF_SPLICE	YES	1150	0	0.03	1	0.0213	0.4055	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,RP11-264M12.2->chr16:77775365-77776897:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.4268	TRUE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NAV1--IPO9	1	41	NAV1	4638	chr1:201618553:+	IPO9	49125	chr1:201804082:+	ONLY_REF_SPLICE	YES	0	101	1	0.29	0.0107	0.4376	NEIGHBORS[2167],NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,IPO9->chr1:201798269-201853422:+,importin_9	LN464_CENTRAL_NERVOUS_SYSTEM	0.29	1	0.4483	FALSE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ITPK1--RP11-371E8.4	11	0	ITPK1	6705	chr14:93483021:-	RP11-371E8.4	29399	chr14:93681522:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1174	0	LOCAL_INVERSION:-:+:[68653],ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,RP11-371E8.4->chr14:93651318-93684932:+	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.1174	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	10	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1067	0.0427	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.1494	FALSE	499	1288	110	792	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RP11-476K15.1--CTD-2015H3.2	10	4	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	2	1	0.88	0.93	0.1067	0.0427	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.88	0.93	0.1494	FALSE	0	46	0	73	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NFIX--REEP6	6	19	NFIX	4898	chr19:13136366:+	REEP6	23994	chr19:1496284:+	ONLY_REF_SPLICE	YES	49	17	0.34	0.6	0.064	0.2028	NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,REEP6->chr19:1491165-1497926:+,receptor_accessory_protein_6	LN464_CENTRAL_NERVOUS_SYSTEM	0.34	0.6	0.2668	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SRPR--ASB16	10	2	SRPR	4811	chr11:126135229:-	ASB16	15113	chr17:42256125:+	INCL_NON_REF_SPLICE	YES	239	5	0.05	0.71	0.1067	0.0213	SRPR->chr11:126132814-126139039:-,ASB16->ankyrin_repeat_and_SOCS_box_containing_16,chr17:42247815-42256451:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.05	0.71	0.128	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	9	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.096	0.0534	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.1494	FALSE	499	1288	110	792	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SAMD4A--MAPK1IP1L	8	9	SAMD4A	2016	chr14:55034830:+	MAPK1IP1L	38739	chr14:55528398:+	ONLY_REF_SPLICE	YES	50	195	0.25	0.08	0.0854	0.096	SAMD4A->chr14:55033815-55260033:+,sterile_alpha_motif_domain_containing_4A,MAPK1IP1L->chr14:55518349-55536910:+,mitogen-activated_protein_kinase_1_interacting_protein_1-like	LN464_CENTRAL_NERVOUS_SYSTEM	0.08	0.25	0.1814	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	VCL--ADK	9	4	VCL	20814	chr10:75868914:+	ADK	41622	chr10:76349040:+	ONLY_REF_SPLICE	YES	113	119	0.1	0.1	0.096	0.0427	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[31042],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ADK->adenosine_kinase,chr10:75910960-76469061:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.1	0.1	0.1387	FALSE	0	1	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RHPN2--INSL3	3	27	RHPN2	1105	chr19:33555690:-	INSL3	23107	chr19:17931299:-	ONLY_REF_SPLICE	YES	1	7	0.97	0.81	0.032	0.2881	RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2,INSL3->chr19:17927321-17932383:-,insulin_like_3	LN464_CENTRAL_NERVOUS_SYSTEM	0.81	0.97	0.3201	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	7	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0.1067	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.1814	FALSE	499	1288	110	792	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	7	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0.1067	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.1814	FALSE	462	80	0	856	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MEGF8--RAB8A	8	4	MEGF8	7579	chr19:42847783:+	RAB8A	46447	chr19:16244837:+	INCL_NON_REF_SPLICE	YES	38	4	0.24	0.75	0.0854	0.0427	MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8,RAB8A->Oncogene{Bushman},RAB8A,_member_RAS_oncogene_family,chr19:16222439-16245044:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.24	0.75	0.1281	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	20	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1799	0	0.01	1	0.0427	0.2134	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN464_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.2561	FALSE	344	827	44	306	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SH2B3--PVRL2	6	10	SH2B3	7440	chr12:111885631:+	PVRL2	15676	chr19:45368528:+	ONLY_REF_SPLICE	YES	563	221	0.03	0.07	0.064	0.1067	SH2B3->SH2B_adaptor_protein_3,chr12:111843752-111889427:+,PVRL2->chr19:45349432-45392485:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.03	0.07	0.1707	TRUE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	8	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	47	1356	0.16	0.01	0.0854	0.0107	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.01	0.16	0.0961	FALSE	0	0	0	434	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	TOP1--ZHX3	5	13	TOP1	2735	chr20:39690130:+	ZHX3	30666	chr20:39897723:-	ONLY_REF_SPLICE	YES	268	1	0.06	0.95	0.0534	0.1387	LOCAL_INVERSION:+:-:[53961],TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I,ZHX3->chr20:39807088-39946312:-,zinc_fingers_and_homeoboxes_3	LN464_CENTRAL_NERVOUS_SYSTEM	0.06	0.95	0.1921	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ZNF266--ADCK4	3	21	ZNF266	2504	chr19:9544751:-	ADCK4	20003	chr19:41211352:-	ONLY_REF_SPLICE	YES	28	35	0.46	0.41	0.032	0.2241	ZNF266->chr19:9523272-9546254:-,zinc_finger_protein_266,ADCK4->aarF_domain_containing_kinase_4,chr19:41197434-41224112:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.41	0.46	0.2561	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ZNF266--ADCK4	3	21	ZNF266	2514	chr19:9544741:-	ADCK4	20003	chr19:41211352:-	ONLY_REF_SPLICE	YES	28	35	0.46	0.41	0.032	0.2241	ZNF266->chr19:9523272-9546254:-,zinc_finger_protein_266,ADCK4->aarF_domain_containing_kinase_4,chr19:41197434-41224112:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.41	0.46	0.2561	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	5	12	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	6	0.94	0.74	0.0534	0.1281	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LN464_CENTRAL_NERVOUS_SYSTEM	0.74	0.94	0.1815	FALSE	189	492	56	216	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	20	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	67	0	0.26	1	0.032	0.2134	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN464_CENTRAL_NERVOUS_SYSTEM	0.26	1	0.2454	FALSE	344	826	44	306	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SLC7A5--RP11-264M12.2	1	28	SLC7A5	9399	chr16:87870104:-	RP11-264M12.2	18472	chr16:77776006:-	ONLY_REF_SPLICE	YES	1150	9	0.02	0.76	0.0107	0.2988	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,RP11-264M12.2->chr16:77775365-77776897:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.02	0.76	0.3095	TRUE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MYO5A--FAM214A	6	6	MYO5A	1271	chr15:52820977:-	FAM214A	68858	chr15:52893362:-	ONLY_REF_SPLICE	YES	5	12	0.71	0.5	0.064	0.064	LOCAL_REARRANGEMENT:-:[52267],MYO5A->chr15:52599480-52821247:-,myosin_VA,FAM214A->chr15:52873514-53002014:-,family_with_sequence_similarity_214_member_A	LN464_CENTRAL_NERVOUS_SYSTEM	0.5	0.71	0.128	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NAV1--IPO9	6	5	NAV1	2428	chr1:201598635:+	IPO9	50236	chr1:201816407:+	ONLY_REF_SPLICE	YES	19	92	0.37	0.11	0.064	0.0534	NEIGHBORS[2167],NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,IPO9->chr1:201798269-201853422:+,importin_9	LN464_CENTRAL_NERVOUS_SYSTEM	0.11	0.37	0.1174	FALSE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	3	16	MT-CO3	1113	chrM:9319:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.032	0.1708	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LN464_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.2028	FALSE	189	492	56	216	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	5	8	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0.0854	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.1388	FALSE	462	80	0	856	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NRG3--USP54	5	7	NRG3	1850	chr10:83635919:+	USP54	37504	chr10:75305430:-	ONLY_REF_SPLICE	YES	33	19	0.27	0.39	0.0534	0.0747	NRG3->chr10:83635070-84746935:+,neuregulin_3,USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54	LN464_CENTRAL_NERVOUS_SYSTEM	0.27	0.39	0.1281	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	GTPBP3--VMP1	5	5	GTPBP3	3182	chr19:17448473:+	VMP1	22227	chr17:57889031:+	ONLY_REF_SPLICE	YES	26	441	0.28	0.02	0.0534	0.0534	GTPBP3->GTP_binding_protein_3_(mitochondrial),chr19:17445729-17453544:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	LN464_CENTRAL_NERVOUS_SYSTEM	0.02	0.28	0.1068	TRUE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	3	13	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	20	0.94	0.44	0.032	0.1387	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LN464_CENTRAL_NERVOUS_SYSTEM	0.44	0.94	0.1707	FALSE	189	492	56	216	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	5	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.56	1	0.0534	0.0534	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.56	1	0.1068	FALSE	125	705	46	456	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MEGF8--HSH2D	1	20	MEGF8	6424	chr19:42841358:+	HSH2D	36594	chr19:16252751:+	ONLY_REF_SPLICE	YES	39	0	0.35	1	0.0107	0.2134	MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8,HSH2D->chr19:16244838-16269386:+,hematopoietic_SH2_domain_containing	LN464_CENTRAL_NERVOUS_SYSTEM	0.35	1	0.2241	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MEGF8--HSH2D	1	20	MEGF8	7579	chr19:42847783:+	HSH2D	37747	chr19:16254442:+	ONLY_REF_SPLICE	NO	38	0	0.36	1	0.0107	0.2134	MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8,HSH2D->chr19:16244838-16269386:+,hematopoietic_SH2_domain_containing	LN464_CENTRAL_NERVOUS_SYSTEM	0.36	1	0.2241	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	5	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	12	1	0.43	0.0534	0.0427	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.43	1	0.0961	TRUE	477	1352	189	275	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.1067	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.1387	FALSE	499	1288	110	792	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	3	10	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.1067	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.1387	FALSE	462	80	0	856	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NDUFC2--ALDH1A2	4	6	NDUFC2	1641	chr11:77790625:-	ALDH1A2	11086	chr15:58712304:-	ONLY_REF_SPLICE	YES	1638	0	0.01	1	0.0427	0.064	NDUFC2->NADH:ubiquinone_oxidoreductase_subunit_C2,chr11:77779350-77791265:-,ALDH1A2->aldehyde_dehydrogenase_1_family_member_A2,chr15:58245622-58790065:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.1067	TRUE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SH2B3--PVRL2	3	10	SH2B3	7983	chr12:111886174:+	PVRL2	15676	chr19:45368528:+	INCL_NON_REF_SPLICE	YES	400	221	0.03	0.06	0.032	0.1067	SH2B3->SH2B_adaptor_protein_3,chr12:111843752-111889427:+,PVRL2->chr19:45349432-45392485:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.03	0.06	0.1387	TRUE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	4	5	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	12	0.75	0.43	0.0427	0.0534	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.43	0.75	0.0961	FALSE	49	120	16	70	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SAMD4A--MAPK1IP1L	3	8	SAMD4A	2016	chr14:55034830:+	MAPK1IP1L	39677	chr14:55529336:+	ONLY_REF_SPLICE	YES	50	242	0.18	0.04	0.032	0.0854	SAMD4A->chr14:55033815-55260033:+,sterile_alpha_motif_domain_containing_4A,MAPK1IP1L->chr14:55518349-55536910:+,mitogen-activated_protein_kinase_1_interacting_protein_1-like	LN464_CENTRAL_NERVOUS_SYSTEM	0.04	0.18	0.1174	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	CTD-2023N9.1--CTD-2023N9.2	4	3	CTD-2023N9.1	1119	chr5:56691005:+	CTD-2023N9.2	7902	chr5:56869858:+	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0427	0.032	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.78	1	0.0747	FALSE	0	0	0	6	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	TMEM170A--BCAR1	1	15	TMEM170A	2266	chr16:75498130:-	BCAR1	24931	chr16:75276988:-	ONLY_REF_SPLICE	NO	52	10	0.24	0.62	0.0107	0.1601	TMEM170A->chr16:75476952-75499395:-,transmembrane_protein_170A,BCAR1->BCAR1,_Cas_family_scaffolding_protein,chr16:75262928-75301951:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.24	0.62	0.1708	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	GNG12--RP11-318C4.2	4	2	GNG12	2174	chr1:68243141:-	RP11-318C4.2	17008	chr10:124528842:+	ONLY_REF_SPLICE	YES	289	0	0.02	1	0.0427	0.0213	GNG12->G_protein_subunit_gamma_12,chr1:68167149-68299150:-,RP11-318C4.2->chr10:124516210-124558696:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.064	TRUE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	6	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3370	28466	0	0	0.032	0.064	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN464_CENTRAL_NERVOUS_SYSTEM	0	0	0.096	FALSE	183	104	9	328	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ZNF266--ADCK4	1	14	ZNF266	1781	chr19:9545474:-	ADCK4	20003	chr19:41211352:-	ONLY_REF_SPLICE	YES	38	35	0.28	0.3	0.0107	0.1494	ZNF266->chr19:9523272-9546254:-,zinc_finger_protein_266,ADCK4->aarF_domain_containing_kinase_4,chr19:41197434-41224112:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.28	0.3	0.1601	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	3	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.36	1	0.032	0.0534	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.36	1	0.0854	FALSE	164	806	69	479	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	3	5	RP11-141M1.3	11074	chr13:33933602:-	STARD13	15567	chr13:33924736:-	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.032	0.0534	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.73	1	0.0854	FALSE	0	0	0	3	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ZNF541--ZNF382	3	5	ZNF541	7246	chr19:48043384:-	ZNF382	18677	chr19:37096028:+	INCL_NON_REF_SPLICE	YES	1	1	0.89	0.89	0.032	0.0534	HGNC_GENEFAM,ZNF541->chr19:48023942-48059113:-,zinc_finger_protein_541,ZNF382->chr19:37095719-37119499:+,zinc_finger_protein_382	LN464_CENTRAL_NERVOUS_SYSTEM	0.89	0.89	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ENO1--EEF2	4	0	ENO1	11548	chr1:8923321:-	EEF2	24932	chr19:3976731:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0427	TRUE	0	0	0	9	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	4	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0427	FALSE	189	492	56	216	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0427	FALSE	189	492	56	216	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SCARB1--UBC	4	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0427	TRUE	55	66	6	101	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1083	chr6:30691572:-	TUBBP2	4900	chr13:41959193:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0427	TRUE	0	1	0	48	1	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	3	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	55	77	0.1	0.07	0.032	0.032	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LN464_CENTRAL_NERVOUS_SYSTEM	0.07	0.1	0.064	TRUE	267	562	48	632	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	TOP1--ZHX3	2	7	TOP1	1638	chr20:39658095:+	ZHX3	30666	chr20:39897723:-	ONLY_REF_SPLICE	NO	336	1	0.03	0.9	0.0213	0.0747	LOCAL_INVERSION:+:-:[53961],TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I,ZHX3->chr20:39807088-39946312:-,zinc_fingers_and_homeoboxes_3	LN464_CENTRAL_NERVOUS_SYSTEM	0.03	0.9	0.096	TRUE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NDUFC2--ALDH1A2	2	6	NDUFC2	2785	chr11:77784044:-	ALDH1A2	11086	chr15:58712304:-	ONLY_REF_SPLICE	YES	730	0	0.01	1	0.0213	0.064	NDUFC2->NADH:ubiquinone_oxidoreductase_subunit_C2,chr11:77779350-77791265:-,ALDH1A2->aldehyde_dehydrogenase_1_family_member_A2,chr15:58245622-58790065:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0853	FALSE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RALGAPB--RPRD1B	2	6	RALGAPB	4837	chr20:37126159:+	RPRD1B	53019	chr20:36718128:+	ONLY_REF_SPLICE	YES	79	132	0.09	0.06	0.0213	0.064	RALGAPB->Ral_GTPase_activating_protein_non-catalytic_beta_subunit,chr20:37101459-37207504:+,RPRD1B->chr20:36661948-36720768:+,regulation_of_nuclear_pre-mRNA_domain_containing_1B	LN464_CENTRAL_NERVOUS_SYSTEM	0.06	0.09	0.0853	TRUE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SRCAP--FANCA	3	2	SRCAP	20879	chr16:30740893:+	FANCA	61469	chr16:89828430:-	ONLY_REF_SPLICE	YES	69	54	0.07	0.08	0.032	0.0213	SRCAP->Snf2-related_CREBBP_activator_protein,chr16:30709530-30755602:+,FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.07	0.08	0.0533	TRUE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	AC092295.7--PAFAH1B3	3	1	AC092295.7	2566	chr19:37065802:+	PAFAH1B3	10426	chr19:42806477:-	ONLY_REF_SPLICE	YES	13	178	0.24	0.02	0.032	0.0107	AC092295.7->chr19:37063972-37085610:+,PAFAH1B3->chr19:42801185-42807698:-,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_3	LN464_CENTRAL_NERVOUS_SYSTEM	0.02	0.24	0.0427	TRUE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	9130	24328	0	0	0.032	0.0107	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN464_CENTRAL_NERVOUS_SYSTEM	0	0	0.0427	FALSE	183	104	9	328	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	1	MT-ATP6	1132	chrM:8658:+	MT-CO1	5255	chrM:6477:+	INCL_NON_REF_SPLICE	YES	10062	23825	0	0	0.032	0.0107	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN464_CENTRAL_NERVOUS_SYSTEM	0	0	0.0427	FALSE	183	104	9	328	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	47	1248	0.08	0	0.032	0.0107	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LN464_CENTRAL_NERVOUS_SYSTEM	0	0.08	0.0427	FALSE	0	0	0	434	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	2	5	0.67	0.44	0.032	0.0107	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.44	0.67	0.0427	FALSE	25	145	6	90	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	2	5	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	12	0.7	0.37	0.0213	0.0534	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.37	0.7	0.0747	FALSE	141	264	50	91	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NFIC--ZNF14	3	0	NFIC	1123	chr19:3359683:+	ZNF14	26819	chr19:19825296:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	NFIC->Oncogene{Bushman},chr19:3359561-3469215:+,nuclear_factor_I_C,ZNF14->chr19:19821280-19843906:-,zinc_finger_protein_14	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NUBP2--RP11-296I10.3	3	0	NUBP2	1136	chr16:1833037:+	RP11-296I10.3	14617	chr16:70192792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	NUBP2->chr16:1832902-1839192:+,nucleotide_binding_protein_2,RP11-296I10.3->chr16:70190243-70207351:-	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RP11-476K15.1--CTD-2015H3.2	2	4	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0213	0.0427	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.064	FALSE	0	46	0	73	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	UBE2L3--HDLBP	3	0	UBE2L3	4131	chr22:21947245:+	HDLBP	29769	chr2:242189395:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.032	TRUE	0	1	0	48	1	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	LIMD1--LARS2	1	7	LIMD1	7325	chr3:45677743:+	LARS2	51853	chr3:45588843:+	ONLY_REF_SPLICE	YES	8	127	0.5	0.06	0.0107	0.0747	LOCAL_REARRANGEMENT:+:[5973],LIMD1->LIM_domains_containing_1,Oncogene{Bushman},chr3:45596886-45727830:+,LARS2->chr3:45429998-45590913:+,leucyl-tRNA_synthetase_2,_mitochondrial	LN464_CENTRAL_NERVOUS_SYSTEM	0.06	0.5	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	WWOX--CA5A	2	2	WWOX	6262	chr16:78149051:+	CA5A	37512	chr16:87936126:-	ONLY_REF_SPLICE	YES	15	1	0.21	0.8	0.0213	0.0213	WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,CA5A->carbonic_anhydrase_5A,chr16:87921625-87970135:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.21	0.8	0.0426	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	CTD-2023N9.1--CTD-2023N9.2	2	1	CTD-2023N9.1	1119	chr5:56691005:+	CTD-2023N9.2	11053	chr5:56910004:+	ONLY_REF_SPLICE	YES	2	2	0.6	0.6	0.0213	0.0107	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.6	0.6	0.032	FALSE	0	0	0	9	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	GNG12--RP11-318C4.2	2	1	GNG12	1124	chr1:68299027:-	RP11-318C4.2	17008	chr10:124528842:+	ONLY_REF_SPLICE	YES	76	0	0.04	1	0.0213	0.0107	GNG12->G_protein_subunit_gamma_12,chr1:68167149-68299150:-,RP11-318C4.2->chr10:124516210-124558696:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	HP1BP3--EIF4G3	2	1	HP1BP3	1129	chr1:21113688:-	EIF4G3	63609	chr1:21167521:-	ONLY_REF_SPLICE	YES	47	225	0.06	0.01	0.0213	0.0107	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	LN464_CENTRAL_NERVOUS_SYSTEM	0.01	0.06	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NAV1--IPO9	1	5	NAV1	2428	chr1:201598635:+	IPO9	49125	chr1:201804082:+	ONLY_REF_SPLICE	YES	19	101	0.24	0.06	0.0107	0.0534	NEIGHBORS[2167],NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,IPO9->chr1:201798269-201853422:+,importin_9	LN464_CENTRAL_NERVOUS_SYSTEM	0.06	0.24	0.0641	FALSE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	2	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0.0107	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.032	TRUE	254	575	65	124	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SF1--FUS	2	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	303	1030	0.01	0	0.0213	0.0107	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	LN464_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.032	FALSE	5	20	0	32	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	CD302--CHD1L	2	0	CD302	1111	chr2:160654643:-	CHD1L	26210	chr1:146747017:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	CD302->CD302_molecule,chr2:160625364-160654753:-,CHD1L->chr1:146714291-146767443:+,chromodomain_helicase_DNA_binding_protein_1-like	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	CTC-228N24.2--CTC-228N24.3	2	0	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	1	0	12	1	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	DDT--MEIS2	2	0	DDT	4753	chr22:24315957:-	MEIS2	27792	chr15:37188887:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	DDT->D-dopachrome_tautomerase,chr22:24313554-24322660:-,MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	MINOS1--CAPZB	2	0	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	2	7	0	21	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	NRG3--USP54	2	0	NRG3	1850	chr10:83635919:+	USP54	44954	chr10:75290593:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	NRG3->chr10:83635070-84746935:+,neuregulin_3,USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RCC1--PCCA	2	0	RCC1	2175	chr1:28834672:+	PCCA	44867	chr13:101077887:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	1	4	RP11-141M1.3	5599	chr13:34098375:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	12	0.71	0.29	0.0107	0.0427	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.29	0.71	0.0534	FALSE	9	22	2	16	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SLC39A10--DLG1	2	0	SLC39A10	3739	chr2:196522005:+	DLG1	54521	chr3:196796131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	SLC39A10->chr2:196440701-196602426:+,solute_carrier_family_39_member_10,DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SNHG16--TMF1	2	0	SNHG16	1092	chr17:74553939:+	TMF1	23215	chr3:69077446:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,TMF1->TATA_element_modulatory_factor_1,chr3:69068978-69101484:-	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	WWOX--RP11-319G9.5	2	0	WWOX	6262	chr16:78149051:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	LN464_CENTRAL_NERVOUS_SYSTEM	1	1	0.0213	FALSE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SUMO3--TSPEAR	1	3	SUMO3	1832	chr21:46237863:-	TSPEAR	14106	chr21:45953806:-	ONLY_REF_SPLICE	NO	143	12	0.03	0.25	0.0107	0.032	NEIGHBORS[94037],SUMO3->chr21:46225532-46238694:-,small_ubiquitin-like_modifier_3,TSPEAR->chr21:45917775-46131495:-,thrombospondin-type_laminin_G_domain_and_EAR_repeats	LN464_CENTRAL_NERVOUS_SYSTEM	0.03	0.25	0.0427	FALSE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	1	3	TIMM23	5841	chr10:51610393:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	600	1	0.01	0.8	0.0107	0.032	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LN464_CENTRAL_NERVOUS_SYSTEM	0.01	0.8	0.0427	FALSE	1	12	0	11	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	LINC00473--PDE10A	1	2	LINC00473	9097	chr6:166324296:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	NO	14	0	0.18	1	0.0107	0.0213	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	LN464_CENTRAL_NERVOUS_SYSTEM	0.18	1	0.032	FALSE	2	5	0	11	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	TRAPPC9--PTK2	1	2	TRAPPC9	11730	chr8:141370149:-	PTK2	122137	chr8:141678523:-	ONLY_REF_SPLICE	NO	25	205	0.11	0.01	0.0107	0.0213	TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	LN464_CENTRAL_NERVOUS_SYSTEM	0.01	0.11	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	2999	138	0	0.02	0.0107	0.0213	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	LN464_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.032	FALSE	6	50	7	115	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	AC092295.7--PAFAH1B3	1	1	AC092295.7	5427	chr19:37084833:+	PAFAH1B3	10426	chr19:42806477:-	ONLY_REF_SPLICE	YES	6	178	0.25	0.01	0.0107	0.0107	AC092295.7->chr19:37063972-37085610:+,PAFAH1B3->chr19:42801185-42807698:-,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_3	LN464_CENTRAL_NERVOUS_SYSTEM	0.01	0.25	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ACSL3--SERPINE2	1	1	ACSL3	1325	chr2:223725976:+	SERPINE2	33557	chr2:224866639:-	ONLY_REF_SPLICE	YES	1017	6506	0	0	0.0107	0.0107	ACSL3->Oncogene{Bushman},acyl-CoA_synthetase_long-chain_family_member_3,chr2:223725652-223809357:+,SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2	LN464_CENTRAL_NERVOUS_SYSTEM	0	0	0.0214	FALSE	0	1	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	ATG4B--DTYMK	1	1	ATG4B	8382	chr2:242598602:+	DTYMK	20644	chr2:242625292:-	ONLY_REF_SPLICE	NO	250	501	0.01	0	0.0107	0.0107	LOCAL_INVERSION:+:-:[1885],ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+,DTYMK->chr2:242615157-242626406:-,deoxythymidylate_kinase	LN464_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	CTD-2033A16.3--NQO1	1	1	CTD-2033A16.3	1163	chr16:69761078:+	NQO1	7112	chr16:69752437:-	ONLY_REF_SPLICE	YES	10	4672	0.17	0	0.0107	0.0107	LOCAL_INVERSION:+:-:[62],CTD-2033A16.3->chr16:69760916-69776466:+,NQO1->NAD(P)H_quinone_dehydrogenase_1,Oncogene{Bushman},chr16:69740899-69760854:-	LN464_CENTRAL_NERVOUS_SYSTEM	0	0.17	0.0214	FALSE	0	0	0	3	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	CTNNB1--ULK4	1	1	CTNNB1	3896	chr3:41241161:+	ULK4	56314	chr3:41723295:-	ONLY_REF_SPLICE	YES	1673	8	0	0.2	0.0107	0.0107	GTEx_v2:{count=8;pct=0.09%;dist=Heart_-_Atrial_Appendage=2,Lung=1,Prostate=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Colon_-_Transverse=1},NEIGHBORS_OVERLAP:+:-:[13497],CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	LN464_CENTRAL_NERVOUS_SYSTEM	0	0.2	0.0214	FALSE	0	0	0	3	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	DANCR--ITGB3BP	1	1	DANCR	1530	chr4:53579126:+	ITGB3BP	18619	chr1:63920639:-	ONLY_REF_SPLICE	YES	482	184	0	0.01	0.0107	0.0107	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	LN464_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0214	FALSE	0	0	0	9	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	LINC00473--PDE10A	1	1	LINC00473	1520	chr6:166401017:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	76	0	0.03	1	0.0107	0.0107	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	LN464_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0214	FALSE	6	13	0	15	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	PIK3R1--PAPD4	1	1	PIK3R1	4287	chr5:67522837:+	PAPD4	41211	chr5:78964715:+	ONLY_REF_SPLICE	NO	21	189	0.09	0.01	0.0107	0.0107	PIK3R1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:67511548-67597649:+,phosphoinositide-3-kinase_regulatory_subunit_1,PAPD4->PAP_associated_domain_containing_4,chr5:78907943-78982471:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.01	0.09	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SF1--FUS	1	1	SF1	3289	chr11:64543970:-	FUS	24070	chr16:31200444:+	ONLY_REF_SPLICE	YES	303	1717	0.01	0	0.0107	0.0107	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	LN464_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0214	FALSE	5	20	0	32	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	SNHG5--ITGB3BP	1	1	SNHG5	1780	chr6:86387672:-	ITGB3BP	20532	chr1:63920639:-	ONLY_REF_SPLICE	YES	1816	184	0	0.01	0.0107	0.0107	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	LN464_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0214	FALSE	0	0	0	3	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	STARD13--PDS5B	1	1	STARD13	4237	chr13:33859607:-	PDS5B	55933	chr13:33284083:+	ONLY_REF_SPLICE	YES	14	49	0.12	0.04	0.0107	0.0107	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Ovary=1,Thyroid=1},STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-,PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+	LN464_CENTRAL_NERVOUS_SYSTEM	0.04	0.12	0.0214	TRUE	0	0	0	1	0	FALSE	ACH-000676
LN464_CENTRAL_NERVOUS_SYSTEM	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	18348	chr17:1326944:-	ONLY_REF_SPLICE	YES	2999	169	0	0.01	0.0107	0.0107	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	LN464_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0214	FALSE	0	1	0	2	0	FALSE	ACH-000676
TCCPAN2_PANCREAS	MT-ND4--MT-ND4L	24	32	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	1437	0	0.04	1	0.3713	0.495	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TCCPAN2_PANCREAS	0.04	1	0.8663	FALSE	344	827	44	306	0	FALSE	ACH-000502
TCCPAN2_PANCREAS	PCGF2--CWC25	18	9	PCGF2	5252	chr17:36896544:-	CWC25	16598	chr17:36971350:-	ONLY_REF_SPLICE	YES	11	10	0.71	0.73	0.2784	0.1392	LOCAL_REARRANGEMENT:-:[50617],PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2,CWC25->CWC25_spliceosome-associated_protein_homolog,chr17:36956687-36981734:-	TCCPAN2_PANCREAS	0.71	0.73	0.4176	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	PCGF2--CWC25	9	10	PCGF2	5252	chr17:36896544:-	CWC25	15954	chr17:36971994:-	ONLY_REF_SPLICE	YES	11	7	0.63	0.73	0.1392	0.1547	LOCAL_REARRANGEMENT:-:[50617],PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2,CWC25->CWC25_spliceosome-associated_protein_homolog,chr17:36956687-36981734:-	TCCPAN2_PANCREAS	0.63	0.73	0.2939	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	TIMM23B--LINC00843	11	1	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1702	0.0155	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TCCPAN2_PANCREAS	1	1	0.1857	TRUE	508	994	45	981	0	FALSE	ACH-000502
TCCPAN2_PANCREAS	MT-TA--MT-TC	9	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1392	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TCCPAN2_PANCREAS	1	1	0.1392	FALSE	462	80	0	856	0	FALSE	ACH-000502
TCCPAN2_PANCREAS	TIMM23--RP11-464F9.1	8	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1238	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TCCPAN2_PANCREAS	1	1	0.1238	TRUE	519	3926	326	965	0	FALSE	ACH-000502
TCCPAN2_PANCREAS	MT-ND4--MT-ND4L	3	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0.0155	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TCCPAN2_PANCREAS	1	1	0.0619	FALSE	344	821	44	306	0	FALSE	ACH-000502
TCCPAN2_PANCREAS	UST--EYS	3	1	UST	3550	chr6:149262570:+	EYS	40114	chr6:65767620:-	ONLY_REF_SPLICE	YES	14	0	0.22	1	0.0464	0.0155	UST->chr6:149068464-149398126:+,uronyl_2-sulfotransferase,EYS->chr6:64429876-66417118:-,eyes_shut_homolog_(Drosophila)	TCCPAN2_PANCREAS	0.22	1	0.0619	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	BLOC1S1--SIPA1L3	3	0	BLOC1S1	3489	chr12:56113393:+	SIPA1L3	40707	chr19:38697454:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	BLOC1S1->biogenesis_of_lysosomal_organelles_complex_1_subunit_1,chr12:56109820-56113871:+,SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3	TCCPAN2_PANCREAS	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	DHX35--GNAS	3	0	DHX35	4414	chr20:37612419:+	GNAS	45094	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0464	0	DHX35->DEAH-box_helicase_35,chr20:37590942-37668366:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TCCPAN2_PANCREAS	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	FGFRL1--TMEM127	3	0	FGFRL1	7567	chr4:1019093:+	TMEM127	21041	chr2:96914812:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,TMEM127->chr2:96914254-96931732:-,transmembrane_protein_127	TCCPAN2_PANCREAS	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	MT-ND6--HLTF	3	0	MT-ND6	1508	chrM:14166:-	HLTF	8137	chr3:148793719:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,HLTF->Oncogene{Bushman},chr3:148747914-148804341:-,helicase-like_transcription_factor	TCCPAN2_PANCREAS	1	1	0.0464	FALSE	0	0	0	1	0	FALSE	ACH-000502
TCCPAN2_PANCREAS	PLEKHM2--HDGF	3	0	PLEKHM2	9252	chr1:16053684:+	HDGF	28158	chr1:156713510:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	PLEKHM2->chr1:16010827-16061264:+,pleckstrin_homology_and_RUN_domain_containing_M2,HDGF->chr1:156711899-156736717:-,hepatoma-derived_growth_factor	TCCPAN2_PANCREAS	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	PSAP--MT-ND4L	3	0	PSAP	8540	chr10:73581661:-	MT-ND4L	16468	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TCCPAN2_PANCREAS	1	1	0.0464	FALSE	0	0	0	3	0	FALSE	ACH-000502
TCCPAN2_PANCREAS	TIAM2--ABHD2	3	0	TIAM2	15383	chr6:155411513:+	ABHD2	63469	chr15:89694908:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0464	0	TIAM2->T-cell_lymphoma_invasion_and_metastasis_2,chr6:155153831-155578857:+,ABHD2->Oncogene{Bushman},abhydrolase_domain_containing_2,chr15:89630690-89745591:+	TCCPAN2_PANCREAS	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	VASP--CCPG1	3	0	VASP	4698	chr19:46024647:+	CCPG1	13565	chr15:55700436:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	VASP->chr19:46009837-46030241:+,vasodilator-stimulated_phosphoprotein,CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-	TCCPAN2_PANCREAS	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	ZC3H7A--ABHD14B	3	0	ZC3H7A	23403	chr16:11846560:-	ABHD14B	31580	chr3:52005563:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,ABHD14B->abhydrolase_domain_containing_14B,chr3:52002526-52017425:-	TCCPAN2_PANCREAS	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	CCNT2--UBE3C	2	0	CCNT2	5318	chr2:135696632:+	UBE3C	41989	chr7:157023774:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	CCNT2->chr2:135675805-135716912:+,cyclin_T2,UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	COG3--ITM2B	2	0	COG3	1286	chr13:46039345:+	ITM2B	32024	chr13:48827944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},COG3->chr13:46039060-46110765:+,component_of_oligomeric_golgi_complex_3,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	CYSTM1--ATAD3C	2	0	CYSTM1	1644	chr5:139554870:+	ATAD3C	12030	chr1:1386061:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	CYSTM1->chr5:139554227-139661637:+,cysteine_rich_transmembrane_module_containing_1,ATAD3C->ATPase_family,_AAA_domain_containing_3C,chr1:1385069-1405538:+	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	FAS--STAMBPL1	2	0	FAS	1250	chr10:90750663:+	STAMBPL1	27470	chr10:90676437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[15504],FAS->ArcherDX_panel,Fas_cell_surface_death_receptor,FoundationOne_panel,Oncogene{Bushman},chr10:90750414-90775542:+,STAMBPL1->STAM_binding_protein_like_1,chr10:90639491-90734910:+	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	HCN2--TCFL5	2	0	HCN2	1685	chr19:590577:+	TCFL5	15227	chr20:61491660:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	HCN2->chr19:589893-617159:+,hyperpolarization_activated_cyclic_nucleotide_gated_potassium_channel_2,TCFL5->chr20:61472467-61493115:-,transcription_factor_like_5	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	IFNGR2--MIB1	2	0	IFNGR2	5800	chr21:34793992:+	MIB1	17550	chr18:19345733:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	IFNGR2->Oncogene{Bushman},chr21:34775202-34851655:+,interferon_gamma_receptor_2_(interferon_gamma_transducer_1),MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	KIAA1715--OLA1	2	0	KIAA1715	1680	chr2:176866888:-	OLA1	32574	chr2:175006728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	KIAA1715->KIAA1715,chr2:176788620-176867567:-,OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	PPFIBP2--STK38	2	0	PPFIBP2	13354	chr11:7618904:+	STK38	43853	chr6:36493419:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	PPFIBP2->PPFIA_binding_protein_2,chr11:7534529-7678358:+,STK38->chr6:36461669-36515247:-,serine/threonine_kinase_38	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	RP11-16D22.2--ILK	2	0	RP11-16D22.2	1082	chr13:34922261:+	ILK	11001	chr11:6630115:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	RP11-16D22.2->chr13:34922180-35188307:+,ILK->chr11:6624961-6632102:+,integrin_linked_kinase	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	458	1351	185	561	0	FALSE	ACH-000502
TCCPAN2_PANCREAS	RP11-762I7.5--GLS	2	0	RP11-762I7.5	14638	chr12:56182859:-	GLS	34108	chr2:191792032:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	RP11-762I7.5->chr12:56151059-56221330:-,GLS->chr2:191745553-191830278:+,glutaminase	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	SGK2--RP11-762I7.5	2	0	SGK2	1192	chr20:42187799:+	RP11-762I7.5	28538	chr12:56189860:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	SGK2->SGK2,_serine/threonine_kinase_2,chr20:42187608-42216877:+,RP11-762I7.5->chr12:56151059-56221330:-	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	TJP2--PCBP1-AS1	2	0	TJP2	22063	chr9:71855063:+	PCBP1-AS1	49058	chr2:70278437:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	TJP2->Oncogene{Bushman},chr9:71736209-71870124:+,tight_junction_protein_2,PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	UBAC2--TNNT1	2	0	UBAC2	14124	chr13:100020160:+	TNNT1	23561	chr19:55658075:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,TNNT1->chr19:55644162-55660722:-,troponin_T1,_slow_skeletal_type	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	VPS9D1--C11orf48	2	0	VPS9D1	3928	chr16:89782870:-	C11orf48	20367	chr11:62430805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	VPS9D1->VPS9_domain_containing_1,chr16:89773542-89787394:-,C11orf48->chr11:62430287-62439727:-	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	ZNF267--FUS	2	0	ZNF267	4304	chr16:31896577:+	FUS	21888	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	ZNF267->chr16:31885079-31928668:+,zinc_finger_protein_267,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	TCCPAN2_PANCREAS	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000502
TCCPAN2_PANCREAS	B2M--GNAS	1	2	B2M	1137	chr15:45003811:+	GNAS	25752	chr20:57470667:+	ONLY_REF_SPLICE	YES	11	146	0.21	0.02	0.0155	0.0309	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Whole_Blood=[count:8=pct:6.1],Blood=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6],Lung=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=18;pct=0.21%;dist=Whole_Blood=9,Lung=3,Pancreas=1,Minor_Salivary_Gland=1,Thyroid=1,Cells_-_EBV-transformed_lymphocytes=1,Muscle_-_Skeletal=1,Colon_-_Transverse=1},B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TCCPAN2_PANCREAS	0.02	0.21	0.0464	TRUE	14	13	1	7	0	FALSE	ACH-000502
TCCPAN2_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0155	0.0155	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TCCPAN2_PANCREAS	1	1	0.031	FALSE	515	4851	409	746	0	FALSE	ACH-000502
HS737T_FIBROBLAST	COL1A1--FN1	664	128	COL1A1	12966	chr17:48266809:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	20236	11879	0.04	0.06	8.2029	1.5813	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0.04	0.06	9.7842	TRUE	0	0	0	17	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	592	0	COL1A1	2858	chr17:48276917:-	COL4A2	63031	chr13:111155801:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	7.3135	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	1	1	7.3135	TRUE	0	0	0	1	0	TRUE	ACH-000185
HS737T_FIBROBLAST	FN1--COL1A1	434	11	FN1	36954	chr2:216243980:-	COL1A1	69586	chr17:48264124:-	INCL_NON_REF_SPLICE	YES	17843	15180	0.02	0.03	5.3616	0.1359	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS737T_FIBROBLAST	0.02	0.03	5.4975	TRUE	0	0	0	13	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	194	34	COL1A1	12369	chr17:48267406:-	COL4A2	39762	chr13:111102107:+	INCL_NON_REF_SPLICE	YES	21109	1753	0.01	0.12	2.3966	0.42	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	0.01	0.12	2.8166	TRUE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	190	17	COL1A1	5208	chr17:48274567:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	NO	15443	11879	0.01	0.02	2.3472	0.21	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0.01	0.02	2.5572	FALSE	0	0	0	9	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL6A2	60	8	COL1A1	5797	chr17:48273978:-	COL6A2	36137	chr21:47544799:+	ONLY_REF_SPLICE	YES	17495	4167	0	0.02	0.7412	0.0988	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS737T_FIBROBLAST	0	0.02	0.84	TRUE	0	0	0	6	0	FALSE	ACH-000185
HS737T_FIBROBLAST	TIMM23B--LINC00843	53	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6548	0.2347	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS737T_FIBROBLAST	1	1	0.8895	TRUE	508	994	45	981	0	FALSE	ACH-000185
HS737T_FIBROBLAST	FN1--COL1A1	48	5	FN1	19505	chr2:216271170:-	COL1A1	69586	chr17:48264124:-	INCL_NON_REF_SPLICE	YES	15117	15180	0	0	0.593	0.0618	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS737T_FIBROBLAST	0	0	0.6548	TRUE	0	0	0	4	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	12	107	COL1A1	15650	chr17:48264125:-	FN1	58080	chr2:216243979:-	INCL_NON_REF_SPLICE	YES	15240	17875	0.01	0.01	0.1482	1.3219	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0.01	0.01	1.4701	TRUE	0	0	0	18	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	22	63	COL1A1	15399	chr17:48264376:-	COL4A2	28721	chr13:111080895:+	INCL_NON_REF_SPLICE	NO	18195	1215	0	0.07	0.2718	0.7783	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	0	0.07	1.0501	FALSE	0	0	0	2	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	25	42	COL1A1	13020	chr17:48266755:-	COL4A2	39762	chr13:111102107:+	INCL_NON_REF_SPLICE	NO	19005	1753	0	0.04	0.3088	0.5189	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	0	0.04	0.8277	FALSE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL6A2	29	25	COL1A1	9774	chr17:48270001:-	COL6A2	29401	chr21:47537350:+	INCL_NON_REF_SPLICE	NO	19710	3385	0	0.02	0.3583	0.3088	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS737T_FIBROBLAST	0	0.02	0.6671	FALSE	0	0	0	6	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	4	120	COL1A1	12718	chr17:48267057:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	22110	11879	0.01	0.01	0.0494	1.4825	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0.01	0.01	1.5319	TRUE	0	0	0	17	0	FALSE	ACH-000185
HS737T_FIBROBLAST	TIMM23--RP11-464F9.1	31	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	184	1	0.15	0.97	0.383	0.0247	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS737T_FIBROBLAST	0.15	0.97	0.4077	TRUE	519	3926	326	965	0	FALSE	ACH-000185
HS737T_FIBROBLAST	MT-ND6--MT-TE	30	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.3706	0.0124	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS737T_FIBROBLAST	0.97	1	0.383	FALSE	499	1288	110	792	0	FALSE	ACH-000185
HS737T_FIBROBLAST	FN1--COL1A1	26	16	FN1	12511	chr2:216285416:-	COL1A1	54970	chr17:48278959:-	INCL_NON_REF_SPLICE	NO	15445	0	0	1	0.3212	0.1977	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS737T_FIBROBLAST	0	1	0.5189	FALSE	0	0	0	5	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	7	78	COL1A1	13456	chr17:48266319:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	18438	18959	0	0	0.0865	0.9636	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0	0	1.0501	TRUE	0	0	0	16	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	3	90	COL1A1	15362	chr17:48264413:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	18473	18959	0.01	0	0.0371	1.1118	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0	0.01	1.1489	TRUE	0	0	0	10	0	FALSE	ACH-000185
HS737T_FIBROBLAST	GAS6--LTBP2	25	0	GAS6	7801	chr13:114538486:-	LTBP2	43349	chr14:74974798:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3088	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=6;pct=0.07%;dist=Cells_-_Transformed_fibroblasts=4,Artery_-_Aorta=1,Uterus=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2	HS737T_FIBROBLAST	1	1	0.3088	TRUE	0	0	0	1	0	TRUE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	3	85	COL1A1	13883	chr17:48265892:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	19619	18959	0	0	0.0371	1.0501	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0	0	1.0872	TRUE	0	0	0	16	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	7	57	COL1A1	16929	chr17:48262846:-	COL4A2	38648	chr13:111099179:+	INCL_NON_REF_SPLICE	YES	5220	1300	0.01	0.05	0.0865	0.7042	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	0.01	0.05	0.7907	TRUE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	12	35	COL1A1	13242	chr17:48266533:-	FN1	63801	chr2:216236956:-	INCL_NON_REF_SPLICE	YES	19863	18060	0	0	0.1482	0.4324	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0	0	0.5806	TRUE	0	0	0	8	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	3	70	COL1A1	8475	chr17:48271300:-	FN1	26912	chr2:216295516:-	INCL_NON_REF_SPLICE	YES	22129	14623	0	0	0.0371	0.8648	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0	0	0.9019	TRUE	0	0	0	8	0	FALSE	ACH-000185
HS737T_FIBROBLAST	MT-ND6--MT-TE	20	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.2471	0.0124	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS737T_FIBROBLAST	0.95	1	0.2595	FALSE	499	1288	110	792	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	4	62	COL1A1	14930	chr17:48264845:-	COL4A2	28721	chr13:111080895:+	INCL_NON_REF_SPLICE	YES	18185	1215	0	0.05	0.0494	0.7659	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	0	0.05	0.8153	TRUE	0	0	0	2	0	FALSE	ACH-000185
HS737T_FIBROBLAST	MT-TA--MT-TC	19	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2347	0.0247	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS737T_FIBROBLAST	1	1	0.2594	FALSE	462	80	0	856	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	5	56	COL1A1	15519	chr17:48264256:-	COL4A2	40421	chr13:111102766:+	INCL_NON_REF_SPLICE	YES	17005	1272	0	0.05	0.0618	0.6918	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	0	0.05	0.7536	TRUE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	8	43	COL1A1	13148	chr17:48266627:-	COL4A2	39744	chr13:111102089:+	INCL_NON_REF_SPLICE	YES	19937	1879	0	0.03	0.0988	0.5312	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	0	0.03	0.63	TRUE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	4	48	COL1A1	13229	chr17:48266546:-	COL4A2	39762	chr13:111102107:+	INCL_NON_REF_SPLICE	NO	20393	1753	0	0.03	0.0494	0.593	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	0	0.03	0.6424	FALSE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	5	44	COL1A1	12367	chr17:48267408:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	21011	18959	0	0	0.0618	0.5436	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0	0	0.6054	TRUE	0	0	0	13	0	FALSE	ACH-000185
HS737T_FIBROBLAST	MT-ND6--MT-TE	13	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.1606	0.1482	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS737T_FIBROBLAST	0.86	1	0.3088	FALSE	499	1288	110	792	0	FALSE	ACH-000185
HS737T_FIBROBLAST	RP11-680G10.1--GSE1	16	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1977	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS737T_FIBROBLAST	1	1	0.1977	TRUE	465	1949	224	605	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	2	54	COL1A1	13511	chr17:48266264:-	COL4A2	32792	chr13:111086748:+	ONLY_REF_SPLICE	YES	18957	1276	0	0.04	0.0247	0.6671	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	0	0.04	0.6918	TRUE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	3	49	COL1A1	6963	chr17:48272812:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	19390	11879	0	0	0.0371	0.6053	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0	0	0.6424	TRUE	0	0	0	13	0	FALSE	ACH-000185
HS737T_FIBROBLAST	FN1--COL1A1	15	1	FN1	27876	chr2:216256355:-	COL1A1	70752	chr17:48262958:-	INCL_NON_REF_SPLICE	NO	17538	9565	0	0	0.1853	0.0124	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS737T_FIBROBLAST	0	0	0.1977	FALSE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	RP11-680G10.1--GSE1	14	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.173	0.0371	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS737T_FIBROBLAST	0.94	1	0.2101	TRUE	458	1351	185	561	0	FALSE	ACH-000185
HS737T_FIBROBLAST	KANSL1--ARL17B	12	10	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	25	10	0.47	0.69	0.1482	0.1235	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HS737T_FIBROBLAST	0.47	0.69	0.2717	TRUE	181	1564	124	196	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL6A2	3	44	COL1A1	13037	chr17:48266738:-	COL6A2	29365	chr21:47537314:+	ONLY_REF_SPLICE	YES	20001	3420	0	0.01	0.0371	0.5436	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS737T_FIBROBLAST	0	0.01	0.5807	TRUE	0	1	0	2	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL6A2	8	24	COL1A1	15399	chr17:48264376:-	COL6A2	36137	chr21:47544799:+	ONLY_REF_SPLICE	YES	18189	4167	0	0.01	0.0988	0.2965	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS737T_FIBROBLAST	0	0.01	0.3953	TRUE	0	2	0	2	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	5	33	COL1A1	8463	chr17:48271312:-	COL4A2	28656	chr13:111080830:+	INCL_NON_REF_SPLICE	YES	20472	1116	0	0.03	0.0618	0.4077	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	0	0.03	0.4695	TRUE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	3	41	COL1A1	12383	chr17:48267392:-	FN1	61593	chr2:216239966:-	INCL_NON_REF_SPLICE	YES	21124	19224	0	0	0.0371	0.5065	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0	0	0.5436	TRUE	0	0	0	13	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	3	40	COL1A1	6831	chr17:48272944:-	FN1	22524	chr2:216300497:-	INCL_NON_REF_SPLICE	YES	18723	11120	0	0	0.0371	0.4942	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0	0	0.5313	TRUE	0	0	0	13	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	3	40	COL1A1	6826	chr17:48272949:-	FN1	22519	chr2:216300502:-	INCL_NON_REF_SPLICE	YES	18603	11124	0	0	0.0371	0.4942	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0	0	0.5313	TRUE	0	0	0	13	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	3	39	COL1A1	14318	chr17:48265457:-	COL4A2	45326	chr13:111117936:+	INCL_NON_REF_SPLICE	YES	18777	1190	0	0.03	0.0371	0.4818	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	0	0.03	0.5189	TRUE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	5	29	COL1A1	7831	chr17:48271944:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	18379	18959	0	0	0.0618	0.3583	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0	0	0.4201	TRUE	0	0	0	14	0	FALSE	ACH-000185
HS737T_FIBROBLAST	MT-ND6--COL1A2	12	1	MT-ND6	1313	chrM:14361:-	COL1A2	30434	chr7:94054428:+	INCL_NON_REF_SPLICE	YES	3821	14362	0	0	0.1482	0.0124	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS737T_FIBROBLAST	0	0	0.1606	FALSE	0	1	0	7	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	2	40	COL1A1	12735	chr17:48267040:-	COL4A2	31756	chr13:111084672:+	ONLY_REF_SPLICE	YES	22181	1175	0	0.03	0.0247	0.4942	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	0	0.03	0.5189	TRUE	0	0	0	2	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	6	24	COL1A1	12903	chr17:48266872:-	COL4A2	47834	chr13:111121564:+	INCL_NON_REF_SPLICE	YES	20699	1079	0	0.03	0.0741	0.2965	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	0	0.03	0.3706	TRUE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	5	28	COL1A1	7994	chr17:48271781:-	FN1	62623	chr2:216238134:-	INCL_NON_REF_SPLICE	YES	19533	21125	0	0	0.0618	0.3459	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0	0	0.4077	TRUE	0	0	0	8	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	4	31	COL1A1	12529	chr17:48267246:-	COL4A2	43843	chr13:111114498:+	INCL_NON_REF_SPLICE	YES	21704	1362	0	0.03	0.0494	0.383	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	0	0.03	0.4324	TRUE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	3	34	COL1A1	12529	chr17:48267246:-	COL4A2	39762	chr13:111102107:+	INCL_NON_REF_SPLICE	NO	21704	1753	0	0.02	0.0371	0.42	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	0	0.02	0.4571	FALSE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	RP4-565E6.1--HYDIN	9	7	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1112	0.0865	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS737T_FIBROBLAST	1	1	0.1977	TRUE	456	1387	91	133	0	FALSE	ACH-000185
HS737T_FIBROBLAST	CHSY3--HSPA8P4	9	6	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	69	0	0.18	1	0.1112	0.0741	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	HS737T_FIBROBLAST	0.18	1	0.1853	FALSE	89	26	1	44	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	7	14	COL1A1	13226	chr17:48266549:-	COL4A2	56390	chr13:111142085:+	INCL_NON_REF_SPLICE	NO	20708	926	0	0.02	0.0865	0.173	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	0	0.02	0.2595	FALSE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	4	25	COL1A1	15751	chr17:48264024:-	FN1	65284	chr2:216235130:-	INCL_NON_REF_SPLICE	YES	16229	21153	0	0	0.0494	0.3088	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0	0	0.3582	TRUE	0	0	0	7	0	FALSE	ACH-000185
HS737T_FIBROBLAST	CTD-2337A12.1--CAST	9	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	30	1	0.27	0.1112	0.0247	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS737T_FIBROBLAST	0.27	1	0.1359	TRUE	347	1186	183	220	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	3	24	COL1A1	7639	chr17:48272136:-	FN1	61175	chr2:216240384:-	INCL_NON_REF_SPLICE	YES	17477	16584	0	0	0.0371	0.2965	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0	0	0.3336	TRUE	0	0	0	14	0	FALSE	ACH-000185
HS737T_FIBROBLAST	C15orf57--CBX3	7	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	48	17	0.23	0.45	0.0865	0.0865	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS737T_FIBROBLAST	0.23	0.45	0.173	TRUE	267	562	48	632	0	FALSE	ACH-000185
HS737T_FIBROBLAST	PRR16--CTD-2334D19.1	8	2	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	23	0	0.3	1	0.0988	0.0247	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS737T_FIBROBLAST	0.3	1	0.1235	FALSE	21	45	1	60	0	FALSE	ACH-000185
HS737T_FIBROBLAST	RP1-34H18.1--NAV3	6	6	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	2	1	0.86	0.0741	0.0741	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HS737T_FIBROBLAST	0.86	1	0.1482	TRUE	254	575	65	124	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--FN1	4	13	COL1A1	6258	chr17:48273517:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	20016	18959	0	0	0.0494	0.1606	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS737T_FIBROBLAST	0	0	0.21	TRUE	0	0	0	10	0	FALSE	ACH-000185
HS737T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	5	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.0618	0.0988	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS737T_FIBROBLAST	0.87	1	0.1606	FALSE	407	2205	196	549	0	FALSE	ACH-000185
HS737T_FIBROBLAST	MT-ND6--MT-TE	5	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0618	0.0865	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS737T_FIBROBLAST	0.92	1	0.1483	FALSE	499	1288	110	792	0	FALSE	ACH-000185
HS737T_FIBROBLAST	MT-ND6--MT-TE	3	14	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.81	1	0.0371	0.173	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS737T_FIBROBLAST	0.81	1	0.2101	FALSE	499	1288	110	792	0	FALSE	ACH-000185
HS737T_FIBROBLAST	MT-TA--MT-TC	6	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0741	0.0247	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS737T_FIBROBLAST	1	1	0.0988	FALSE	462	80	0	856	0	FALSE	ACH-000185
HS737T_FIBROBLAST	FTH1--ACTB	6	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	1323	2	0.01	0.78	0.0741	0.0124	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS737T_FIBROBLAST	0.01	0.78	0.0865	FALSE	1	0	0	97	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL6A2	1	20	COL1A1	12413	chr17:48267362:-	COL6A2	34073	chr21:47542022:+	ONLY_REF_SPLICE	NO	22130	4035	0	0.01	0.0124	0.2471	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS737T_FIBROBLAST	0	0.01	0.2595	TRUE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL8A1--CMSS1	5	4	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	1454	76	0.01	0.11	0.0618	0.0494	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HS737T_FIBROBLAST	0.01	0.11	0.1112	FALSE	76	19	3	26	0	FALSE	ACH-000185
HS737T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	4	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.0494	0.0988	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS737T_FIBROBLAST	0.8	1	0.1482	FALSE	192	492	57	212	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL6A2	3	8	COL1A1	4465	chr17:48275310:-	COL6A2	35912	chr21:47544574:+	INCL_NON_REF_SPLICE	NO	13630	4101	0	0	0.0371	0.0988	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS737T_FIBROBLAST	0	0	0.1359	FALSE	0	0	0	2	0	FALSE	ACH-000185
HS737T_FIBROBLAST	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0618	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS737T_FIBROBLAST	1	1	0.0618	FALSE	499	1288	110	792	0	FALSE	ACH-000185
HS737T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	3	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.83	0.91	0.0371	0.0865	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS737T_FIBROBLAST	0.83	0.91	0.1236	FALSE	515	4851	409	746	0	FALSE	ACH-000185
HS737T_FIBROBLAST	CHSY3--HSPA8P4	3	6	CHSY3	4532	chr5:129387864:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	68	0	0.12	1	0.0371	0.0741	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	HS737T_FIBROBLAST	0.12	1	0.1112	FALSE	0	0	0	2	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL4A2	3	6	COL1A1	5797	chr17:48273978:-	COL4A2	36600	chr13:111092136:+	ONLY_REF_SPLICE	YES	17499	932	0	0.01	0.0371	0.0741	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	HS737T_FIBROBLAST	0	0.01	0.1112	TRUE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	FTH1--ACTB	4	1	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	1431	2	0	0.71	0.0494	0.0124	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS737T_FIBROBLAST	0	0.71	0.0618	FALSE	1	0	0	97	0	FALSE	ACH-000185
HS737T_FIBROBLAST	RP11-290D2.6--THBS1	4	1	RP11-290D2.6	2145	chr13:45915318:+	THBS1	6451	chr15:39874585:+	INCL_NON_REF_SPLICE	YES	0	5816	1	0	0.0494	0.0124	RP11-290D2.6->chr13:45914174-45915318:+,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	HS737T_FIBROBLAST	0	1	0.0618	FALSE	0	0	0	2	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL1A1--COL6A2	2	8	COL1A1	4465	chr17:48275310:-	COL6A2	35903	chr21:47544565:+	ONLY_REF_SPLICE	YES	13630	4281	0	0	0.0247	0.0988	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS737T_FIBROBLAST	0	0	0.1235	TRUE	0	0	0	2	0	FALSE	ACH-000185
HS737T_FIBROBLAST	GAS6--COL1A2	4	0	GAS6	10639	chr13:114535648:-	COL1A2	46301	chr7:94054469:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0494	0	GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS737T_FIBROBLAST	1	1	0.0494	TRUE	0	0	0	1	0	TRUE	ACH-000185
HS737T_FIBROBLAST	LOXL2--THBS1	4	0	LOXL2	10231	chr8:23190965:-	THBS1	28331	chr15:39874672:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0494	0	LOXL2->Oncogene{Bushman},chr8:23154702-23282841:-,lysyl_oxidase_like_2,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	HS737T_FIBROBLAST	1	1	0.0494	TRUE	0	0	0	1	0	TRUE	ACH-000185
HS737T_FIBROBLAST	MT-ND6--COL1A2	3	1	MT-ND6	1304	chrM:14370:-	COL1A2	30488	chr7:94054482:+	INCL_NON_REF_SPLICE	YES	4093	13257	0	0	0.0371	0.0124	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS737T_FIBROBLAST	0	0	0.0495	FALSE	0	1	0	7	0	FALSE	ACH-000185
HS737T_FIBROBLAST	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS737T_FIBROBLAST	1	1	0.0371	FALSE	462	80	0	856	0	FALSE	ACH-000185
HS737T_FIBROBLAST	PRR16--CTD-2334D19.1	3	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS737T_FIBROBLAST	1	1	0.0371	FALSE	56	216	12	147	0	FALSE	ACH-000185
HS737T_FIBROBLAST	RP11-358H9.1--RP11-400N13.1	3	0	RP11-358H9.1	2827	chr1:222626082:-	RP11-400N13.1	9106	chr1:222262907:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	NEIGHBORS[65306],RP11-358H9.1->chr1:222626082-222628047:-,RP11-400N13.1->chr1:222262511-222560776:-	HS737T_FIBROBLAST	1	1	0.0371	FALSE	0	22	0	9	0	FALSE	ACH-000185
HS737T_FIBROBLAST	RP11-494M8.4--OVCH2	3	0	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	HS737T_FIBROBLAST	1	1	0.0371	FALSE	60	13	8	23	0	FALSE	ACH-000185
HS737T_FIBROBLAST	IL6ST--DDX4	2	3	IL6ST	18361	chr5:55238498:-	DDX4	48645	chr5:55109501:+	ONLY_REF_SPLICE	YES	204	0	0.02	1	0.0247	0.0371	IL6ST->Oncogene{Bushman},chr5:55230923-55290821:-,interleukin_6_signal_transducer,DDX4->DEAD-box_helicase_4,chr5:55033845-55112985:+	HS737T_FIBROBLAST	0.02	1	0.0618	TRUE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	CTDSP1--DNM3OS	2	1	CTDSP1	5150	chr2:219267128:+	DNM3OS	12044	chr1:172113577:-	ONLY_REF_SPLICE	YES	68	8	0.04	0.27	0.0247	0.0124	GTEx_FI:{Blood_Vessel=[count:34=pct:9.2],Ovary=[count:11=pct:20.8],Colon=[count:9=pct:4.7],Esophagus=[count:5=pct:1.2],Adipose_Tissue=[count:4=pct:1.3],Breast=[count:4=pct:3.6],Thyroid=[count:4=pct:2.3],Spleen=[count:3=pct:2.7],Lung=[count:3=pct:1.8],Vagina=[count:2=pct:3.6],Uterus=[count:2=pct:4.7],Skin=[count:2=pct:0.6],Prostate=[count:2=pct:3.3],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Testis=[count:1=pct:1.0]},CTDSP1->CTD_small_phosphatase_1,chr2:219262979-219270664:+,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	HS737T_FIBROBLAST	0.04	0.27	0.0371	TRUE	71	70	15	9	0	FALSE	ACH-000185
HS737T_FIBROBLAST	NUDT3--CDH4	2	1	NUDT3	1411	chr6:34360041:-	CDH4	28394	chr20:60485478:+	ONLY_REF_SPLICE	YES	44	7	0.06	0.3	0.0247	0.0124	NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3,CDH4->cadherin_4,chr20:59827482-60515673:+	HS737T_FIBROBLAST	0.06	0.3	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000185
HS737T_FIBROBLAST	COL8A1--CMSS1	1	3	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	NO	1626	76	0	0.05	0.0124	0.0371	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HS737T_FIBROBLAST	0	0.05	0.0495	FALSE	38	10	2	29	0	FALSE	ACH-000185
HS737T_FIBROBLAST	COL6A2--COL1A2	1	1	COL6A2	14840	chr21:47544627:+	COL1A2	32244	chr7:94037159:+	ONLY_REF_SPLICE	YES	4145	9067	0	0	0.0124	0.0124	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},HGNC_GENEFAM,PROTCLUST,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS737T_FIBROBLAST	0	0	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	EFEMP1--DCK	1	1	EFEMP1	10683	chr2:56097855:-	DCK	19548	chr4:71888084:+	ONLY_REF_SPLICE	YES	860	75	0	0.03	0.0124	0.0124	EFEMP1->EGF_containing_fibulin-like_extracellular_matrix_protein_1,chr2:56093102-56151274:-,DCK->chr4:71858255-71896631:+,deoxycytidine_kinase	HS737T_FIBROBLAST	0	0.03	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	PPFIBP1--GNAS	1	1	PPFIBP1	4200	chr12:27731172:+	GNAS	57676	chr20:57470667:+	ONLY_REF_SPLICE	NO	146	700	0.01	0	0.0124	0.0124	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HS737T_FIBROBLAST	0	0.01	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000185
HS737T_FIBROBLAST	RP11-680G10.1--RP11-830F9.5	1	1	RP11-680G10.1	1181	chr16:85391249:+	RP11-830F9.5	7116	chr16:88949923:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0124	0.0124	RP11-680G10.1->chr16:85391069-85393055:+,RP11-830F9.5->chr16:88947446-88953544:+	HS737T_FIBROBLAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000185
HCC2450_LUNG	CPSF6--NTS	413	290	CPSF6	11046	chr12:69656342:+	NTS	23679	chr12:86276001:+	ONLY_REF_SPLICE	YES	59	11	0.92	0.98	4.4011	3.0904	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,NTS->chr12:86268073-86276770:+,neurotensin	HCC2450_LUNG	0.92	0.98	7.4915	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	MED13L--LYZ	397	269	MED13L	3147	chr12:116675273:-	LYZ	43875	chr12:69743888:+	ONLY_REF_SPLICE	YES	16	1	0.98	1	4.2306	2.8666	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,LYZ->chr12:69742121-69748014:+,lysozyme	HCC2450_LUNG	0.98	1	7.0972	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	EIF2AK3--HNRNPLL	343	157	EIF2AK3	3924	chr2:88913242:-	HNRNPLL	29155	chr2:38818790:-	ONLY_REF_SPLICE	YES	25	125	0.95	0.8	3.6551	1.6731	EIF2AK3->chr2:88856259-88927094:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_3,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	HCC2450_LUNG	0.8	0.95	5.3282	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	FLNB--SLMAP	61	63	FLNB	32206	chr3:58124256:+	SLMAP	64698	chr3:57843460:+	ONLY_REF_SPLICE	YES	283	37	0.3	0.77	0.65	0.6714	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	HCC2450_LUNG	0.3	0.77	1.3214	TRUE	0	1	0	1	1	TRUE	ACH-000975
HCC2450_LUNG	GMEB2--STMN3	66	23	GMEB2	2696	chr20:62250620:-	STMN3	18291	chr20:62275662:-	ONLY_REF_SPLICE	YES	14	7	0.86	0.93	0.7033	0.2451	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[12667],GMEB2->chr20:62218955-62258394:-,glucocorticoid_modulatory_element_binding_protein_2,STMN3->chr20:62271061-62284780:-,stathmin_3	HCC2450_LUNG	0.86	0.93	0.9484	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	MED13L--LYZ	39	97	MED13L	3147	chr12:116675273:-	LYZ	45274	chr12:69746000:+	ONLY_REF_SPLICE	YES	16	144	0.89	0.49	0.4156	1.0337	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,LYZ->chr12:69742121-69748014:+,lysozyme	HCC2450_LUNG	0.49	0.89	1.4493	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	TIMM23B--LINC00843	53	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.5648	0.2664	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC2450_LUNG	0.99	1	0.8312	TRUE	508	994	45	981	0	FALSE	ACH-000975
HCC2450_LUNG	TAF3--AKR1C4	34	10	TAF3	2615	chr10:7866523:+	AKR1C4	14675	chr10:5237428:+	INCL_NON_REF_SPLICE	YES	43	0	0.51	1	0.3623	0.1066	TAF3->TATA-box_binding_protein_associated_factor_3,chr10:7860467-8058590:+,AKR1C4->aldo-keto_reductase_family_1,_member_C4,chr10:5237425-5260912:+	HCC2450_LUNG	0.51	1	0.4689	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	TIMM23--RP11-464F9.1	35	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	273	5	0.12	0.88	0.373	0.0213	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC2450_LUNG	0.12	0.88	0.3943	TRUE	519	3926	326	965	0	FALSE	ACH-000975
HCC2450_LUNG	GNAQ--PRUNE2	28	23	GNAQ	7652	chr9:80409379:-	PRUNE2	27936	chr9:79328637:-	ONLY_REF_SPLICE	YES	112	0	0.31	1	0.2984	0.2451	GNAQ->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_q,Oncogene{Bushman},OncomapV4_panel,chr9:80331003-80646374:-,PRUNE2->chr9:79226292-79521003:-,prune_homolog_2_(Drosophila)	HCC2450_LUNG	0.31	1	0.5435	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	TNRC18--ZSCAN25	23	13	TNRC18	37459	chr7:5347587:-	ZSCAN25	43610	chr7:99216671:+	INCL_NON_REF_SPLICE	YES	169	31	0.18	0.54	0.2451	0.1385	TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,ZSCAN25->chr7:99214569-99230030:+,zinc_finger_and_SCAN_domain_containing_25	HCC2450_LUNG	0.18	0.54	0.3836	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	RP11-680G10.1--GSE1	24	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	28	1	0.52	0.2558	0.0639	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC2450_LUNG	0.52	1	0.3197	TRUE	465	1949	224	605	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ND4--MT-ND4L	5	81	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	261	0	0.25	1	0.0533	0.8632	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2450_LUNG	0.25	1	0.9165	FALSE	344	827	44	306	0	FALSE	ACH-000975
HCC2450_LUNG	RP11-680G10.1--GSE1	23	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	8	1	0.79	0.2451	0.0746	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC2450_LUNG	0.79	1	0.3197	TRUE	458	1351	185	561	0	FALSE	ACH-000975
HCC2450_LUNG	FBLN2--hsa-mir-6723	22	10	FBLN2	10496	chr3:13655634:+	hsa-mir-6723	26175	chr1:566466:+	INCL_NON_REF_SPLICE	YES	1276	0	0.02	1	0.2344	0.1066	FBLN2->chr3:13573824-13679922:+,fibulin_2,hsa-mir-6723->chr1:566454-567996:+	HCC2450_LUNG	0.02	1	0.341	TRUE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ATP6--MT-ND2	23	0	MT-ATP6	1098	chrM:8624:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2451	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC2450_LUNG	1	1	0.2451	FALSE	177	96	13	17	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ND4--MT-ND4L	3	77	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	13	1	0.86	0.99	0.032	0.8205	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2450_LUNG	0.86	0.99	0.8525	FALSE	344	821	44	306	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ND4--MT-ND4L	3	72	MT-ND4	2237	chrM:11996:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	3754	0	0.02	1	0.032	0.7673	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2450_LUNG	0.02	1	0.7993	FALSE	296	745	40	298	0	FALSE	ACH-000975
HCC2450_LUNG	EIF2AK3--HNRNPLL	4	67	EIF2AK3	3924	chr2:88913242:-	HNRNPLL	30274	chr2:38813023:-	ONLY_REF_SPLICE	YES	25	201	0.74	0.26	0.0426	0.714	EIF2AK3->chr2:88856259-88927094:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_3,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	HCC2450_LUNG	0.26	0.74	0.7566	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	SMAP1--RP1-90L14.1	17	9	SMAP1	8614	chr6:71508440:+	RP1-90L14.1	26296	chr6:85130960:-	ONLY_REF_SPLICE	YES	47	4	0.36	0.87	0.1812	0.0959	SMAP1->Oncogene{Bushman},chr6:71377479-71571718:+,small_ArfGAP_1,RP1-90L14.1->chr6:85130746-85265870:-	HCC2450_LUNG	0.36	0.87	0.2771	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	MT-ATP6--MT-ND2	18	1	MT-ATP6	1221	chrM:8747:+	MT-ND2	5581	chrM:5369:+	INCL_NON_REF_SPLICE	YES	18304	3235	0	0.01	0.1918	0.0107	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC2450_LUNG	0	0.01	0.2025	FALSE	177	96	13	17	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ND6--MT-TE	17	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1812	0.0426	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2450_LUNG	1	1	0.2238	FALSE	499	1288	110	792	0	FALSE	ACH-000975
HCC2450_LUNG	ADAMTS10--C19orf38	17	0	ADAMTS10	1092	chr19:8675529:-	C19orf38	29442	chr19:10979894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1812	0	ADAMTS10->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_10,chr19:8645126-8675620:-,C19orf38->chr19:10947251-10980466:+,chromosome_19_open_reading_frame_38	HCC2450_LUNG	1	1	0.1812	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	CTC-301O7.4--DKKL1	17	0	CTC-301O7.4	1378	chr19:49843488:-	DKKL1	11078	chr19:49877974:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1812	0	LOCAL_INVERSION:-:+:[21175],CTC-301O7.4->chr19:49834874-49843865:-,DKKL1->chr19:49865040-49878373:+,dickkopf_like_acrosomal_protein_1	HCC2450_LUNG	1	1	0.1812	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	MIPEPP3--ABHD12	17	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1812	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	HCC2450_LUNG	1	1	0.1812	TRUE	64	202	9	44	0	FALSE	ACH-000975
HCC2450_LUNG	STAG1--ACAD11	15	6	STAG1	27179	chr3:136117591:-	ACAD11	58903	chr3:132324049:-	ONLY_REF_SPLICE	YES	46	34	0.31	0.38	0.1598	0.0639	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,ACAD11->acyl-CoA_dehydrogenase_family_member_11,chr3:132276982-132379567:-	HCC2450_LUNG	0.31	0.38	0.2237	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	NET1--CELF2	14	9	NET1	4384	chr10:5471192:+	CELF2	20301	chr10:11259388:+	ONLY_REF_SPLICE	YES	77	67	0.23	0.26	0.1492	0.0959	NET1->Oncogene{Bushman},chr10:5454514-5500426:+,neuroepithelial_cell_transforming_1,CELF2->CUGBP,_Elav-like_family_member_2,chr10:11047259-11378674:+	HCC2450_LUNG	0.23	0.26	0.2451	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	MT-ND6--MT-TE	15	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1598	0.0426	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2450_LUNG	1	1	0.2024	FALSE	499	1288	110	792	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ND6--MT-TE	12	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.1279	0.1279	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2450_LUNG	0.92	1	0.2558	FALSE	499	1288	110	792	0	FALSE	ACH-000975
HCC2450_LUNG	COL8A1--CMSS1	9	20	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	635	559	0.04	0.05	0.0959	0.2131	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HCC2450_LUNG	0.04	0.05	0.309	FALSE	76	19	3	26	0	FALSE	ACH-000975
HCC2450_LUNG	NPM1P24--SET	13	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	30	2386	0.32	0.01	0.1385	0.0107	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2450_LUNG	0.01	0.32	0.1492	TRUE	0	0	0	434	0	FALSE	ACH-000975
HCC2450_LUNG	MED13L--LYZ	9	15	MED13L	1279	chr12:116714865:-	LYZ	43875	chr12:69743888:+	ONLY_REF_SPLICE	YES	27	1	0.47	0.96	0.0959	0.1598	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,LYZ->chr12:69742121-69748014:+,lysozyme	HCC2450_LUNG	0.47	0.96	0.2557	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	MT-ND4--MT-ND4L	8	19	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	11973	0	0	1	0.0853	0.2025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2450_LUNG	0	1	0.2878	FALSE	344	827	44	306	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ND4--MT-ND4L	4	30	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	13499	0	0	1	0.0426	0.3197	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2450_LUNG	0	1	0.3623	FALSE	344	827	44	306	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ND4--MT-ND4L	4	30	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	9011	0	0	1	0.0426	0.3197	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2450_LUNG	0	1	0.3623	FALSE	344	827	44	306	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ND4--MT-ND4L	3	30	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	14030	0	0	1	0.032	0.3197	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2450_LUNG	0	1	0.3517	FALSE	328	800	43	304	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ND4--MT-ND4L	3	30	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	183	0	0.15	1	0.032	0.3197	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2450_LUNG	0.15	1	0.3517	FALSE	344	827	44	306	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ATP6--MT-ND2	10	1	MT-ATP6	1158	chrM:8684:+	MT-ND2	5581	chrM:5369:+	INCL_NON_REF_SPLICE	YES	15220	3235	0	0	0.1066	0.0107	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC2450_LUNG	0	0	0.1173	FALSE	177	96	13	17	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ATP6--MT-ND2	9	1	MT-ATP6	1560	chrM:9086:+	MT-ND2	5549	chrM:5337:+	INCL_NON_REF_SPLICE	YES	3199	5086	0	0	0.0959	0.0107	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC2450_LUNG	0	0	0.1066	FALSE	177	96	13	17	0	FALSE	ACH-000975
HCC2450_LUNG	NRIP1--AF127936.7	9	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0959	0.0107	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC2450_LUNG	0.77	1	0.1066	FALSE	292	1546	117	613	0	FALSE	ACH-000975
HCC2450_LUNG	COL1A2--PTMA	8	2	COL1A2	14602	chr7:94041987:+	PTMA	37657	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	7189	7	0	0.59	0.0853	0.0213	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HCC2450_LUNG	0	0.59	0.1066	TRUE	0	0	0	9	0	FALSE	ACH-000975
HCC2450_LUNG	FTH1--ACTG1	8	2	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	9844	0	0	1	0.0853	0.0213	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HCC2450_LUNG	0	1	0.1066	TRUE	0	0	0	64	0	FALSE	ACH-000975
HCC2450_LUNG	COL8A1--CMSS1	4	17	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	730	559	0.03	0.04	0.0426	0.1812	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HCC2450_LUNG	0.03	0.04	0.2238	FALSE	38	10	2	29	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ND4--MT-ND4L	3	19	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	95	0	0.19	1	0.032	0.2025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2450_LUNG	0.19	1	0.2345	FALSE	344	826	44	306	0	FALSE	ACH-000975
HCC2450_LUNG	DHX40--VMP1	6	6	DHX40	10663	chr17:57663594:+	VMP1	33457	chr17:57886157:+	ONLY_REF_SPLICE	YES	95	84	0.11	0.12	0.0639	0.0639	NEIGHBORS[98847],DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HCC2450_LUNG	0.11	0.12	0.1278	FALSE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	DST--BEND6	4	13	DST	1204	chr6:56819223:-	BEND6	130833	chr6:56846509:+	INCL_NON_REF_SPLICE	YES	7	28	0.71	0.38	0.0426	0.1385	LOCAL_INVERSION:-:+:[347],DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,BEND6->BEN_domain_containing_6,chr6:56819773-56892140:+	HCC2450_LUNG	0.38	0.71	0.1811	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	TRAF3--RCOR1	7	1	TRAF3	1200	chr14:103244012:+	RCOR1	36886	chr14:103192805:+	ONLY_REF_SPLICE	YES	5	90	0.62	0.08	0.0746	0.0107	LOCAL_REARRANGEMENT:+:[46900],TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+,RCOR1->REST_corepressor_1,chr14:103058998-103196913:+	HCC2450_LUNG	0.08	0.62	0.0853	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	CCP110--MAPK11	6	4	CCP110	10129	chr16:19552109:+	MAPK11	27301	chr22:50703923:-	ONLY_REF_SPLICE	YES	38	15	0.21	0.4	0.0639	0.0426	CCP110->centriolar_coiled-coil_protein_110kDa,chr16:19535133-19564730:+,MAPK11->chr22:50702142-50709196:-,mitogen-activated_protein_kinase_11	HCC2450_LUNG	0.21	0.4	0.1065	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	CTD-2337A12.1--CAST	7	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0746	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HCC2450_LUNG	1	1	0.0746	TRUE	347	1186	183	220	0	FALSE	ACH-000975
HCC2450_LUNG	HSPA1A--MT-ATP8	7	0	HSPA1A	2532	chr6:31784822:+	MT-ATP8	6536	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0746	0	HSPA1A->chr6:31783291-31785723:+,heat_shock_protein_family_A_(Hsp70)_member_1A,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2450_LUNG	1	1	0.0746	FALSE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	SERPINE1--GANAB	7	0	SERPINE1	8802	chr7:100780719:+	GANAB	25326	chr11:62393136:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0746	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	HCC2450_LUNG	1	1	0.0746	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	FTH1--ACTG1	6	2	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	9970	0	0	1	0.0639	0.0213	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HCC2450_LUNG	0	1	0.0852	FALSE	0	0	0	64	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ND5--MT-ND6	4	9	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0.0959	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HCC2450_LUNG	1	1	0.1385	FALSE	26	124	4	93	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ND5--MT-ND6	5	5	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	1	4922	0.91	0	0.0533	0.0533	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HCC2450_LUNG	0	0.91	0.1066	FALSE	26	124	4	93	0	FALSE	ACH-000975
HCC2450_LUNG	NPM1P24--SET	6	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	30	2194	0.19	0	0.0639	0.0107	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2450_LUNG	0	0.19	0.0746	FALSE	0	0	0	434	0	FALSE	ACH-000975
HCC2450_LUNG	NPM1P24--SET	6	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	30	2203	0.19	0	0.0639	0.0107	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2450_LUNG	0	0.19	0.0746	FALSE	0	0	0	434	0	FALSE	ACH-000975
HCC2450_LUNG	EEF2--RPS28	6	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC2450_LUNG	1	1	0.0639	TRUE	0	0	0	100	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ATP6--MT-ND2	6	0	MT-ATP6	1127	chrM:8653:+	MT-ND2	5145	chrM:4933:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC2450_LUNG	1	1	0.0639	FALSE	177	96	13	17	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ND4--MT-ND4L	3	11	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	224	0	0.06	1	0.032	0.1172	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2450_LUNG	0.06	1	0.1492	FALSE	344	827	44	306	0	FALSE	ACH-000975
HCC2450_LUNG	AP000974.1--PICALM	5	2	AP000974.1	2084	chr11:85564903:-	PICALM	31127	chr11:85670103:-	INCL_NON_REF_SPLICE	YES	2	412	0.78	0.02	0.0533	0.0213	AP000974.1->chr11:85563600-85565986:-,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	HCC2450_LUNG	0.02	0.78	0.0746	TRUE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	TAF3--AKR1C4	5	2	TAF3	2615	chr10:7866523:+	AKR1C4	17162	chr10:5242144:+	ONLY_REF_SPLICE	YES	43	3	0.14	0.7	0.0533	0.0213	TAF3->TATA-box_binding_protein_associated_factor_3,chr10:7860467-8058590:+,AKR1C4->aldo-keto_reductase_family_1,_member_C4,chr10:5237425-5260912:+	HCC2450_LUNG	0.14	0.7	0.0746	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	CELF2--AKR1CL1	5	1	CELF2	4032	chr10:11207645:+	AKR1CL1	29529	chr10:5204983:-	ONLY_REF_SPLICE	YES	62	0	0.09	1	0.0533	0.0107	CELF2->CUGBP,_Elav-like_family_member_2,chr10:11047259-11378674:+,AKR1CL1->chr10:5196335-5244449:-	HCC2450_LUNG	0.09	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	COL1A1--MT-ATP8	5	1	COL1A1	16929	chr17:48262846:-	MT-ATP8	22228	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1608	10	0	0.38	0.0533	0.0107	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2450_LUNG	0	0.38	0.064	FALSE	1	2	0	2	0	FALSE	ACH-000975
HCC2450_LUNG	CTC-301O7.4--DKKL1	5	1	CTC-301O7.4	1437	chr19:49843429:-	DKKL1	11078	chr19:49877974:+	ONLY_REF_SPLICE	YES	2	1	0.75	0.86	0.0533	0.0107	LOCAL_INVERSION:-:+:[21175],CTC-301O7.4->chr19:49834874-49843865:-,DKKL1->chr19:49865040-49878373:+,dickkopf_like_acrosomal_protein_1	HCC2450_LUNG	0.75	0.86	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	MT-ND5--MT-ND6	4	5	MT-ND5	2750	chrM:14086:+	MT-ND6	6158	chrM:14328:-	INCL_NON_REF_SPLICE	YES	1	4916	0.9	0	0.0426	0.0533	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HCC2450_LUNG	0	0.9	0.0959	FALSE	26	124	4	93	0	FALSE	ACH-000975
HCC2450_LUNG	NPM1P24--SET	5	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	30	2193	0.17	0	0.0533	0.0107	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2450_LUNG	0	0.17	0.064	FALSE	0	0	0	434	0	FALSE	ACH-000975
HCC2450_LUNG	NME7--RP11-1113L8.1	5	0	NME7	1260	chr1:169336946:-	RP11-1113L8.1	24742	chr17:19474339:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0533	0	NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,RP11-1113L8.1->chr17:19463424-19501235:-	HCC2450_LUNG	1	1	0.0533	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	SLC5A12--SCGB1D2	5	0	SLC5A12	8715	chr11:26725078:-	SCGB1D2	27745	chr11:62010761:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0533	0	SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12,SCGB1D2->chr11:62009682-62012280:+,secretoglobin,_family_1D_member_2	HCC2450_LUNG	1	1	0.0533	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	COL1A1--MT-ATP8	4	3	COL1A1	18042	chr17:48261733:-	MT-ATP8	22228	chrM:8468:+	INCL_NON_REF_SPLICE	YES	941	10	0.01	0.41	0.0426	0.032	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2450_LUNG	0.01	0.41	0.0746	FALSE	1	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ND6--MT-TE	3	7	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	5	0	0.67	1	0.032	0.0746	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC2450_LUNG	0.67	1	0.1066	FALSE	499	1288	110	792	0	FALSE	ACH-000975
HCC2450_LUNG	COL1A1--MT-ATP8	4	2	COL1A1	16940	chr17:48262835:-	MT-ATP8	22193	chrM:8433:+	INCL_NON_REF_SPLICE	YES	1451	0	0	1	0.0426	0.0213	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2450_LUNG	0	1	0.0639	FALSE	1	2	0	2	0	FALSE	ACH-000975
HCC2450_LUNG	COL8A1--CMSS1	2	10	COL8A1	12080	chr3:99463865:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	1000	559	0.01	0.02	0.0213	0.1066	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HCC2450_LUNG	0.01	0.02	0.1279	FALSE	4	4	0	17	0	FALSE	ACH-000975
HCC2450_LUNG	MB21D2--FGF12	4	2	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	115	1	0.05	0.86	0.0426	0.0213	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	HCC2450_LUNG	0.05	0.86	0.0639	FALSE	0	17	0	46	0	FALSE	ACH-000975
HCC2450_LUNG	SLC6A16--DKKL1	4	2	SLC6A16	4714	chr19:49812133:-	DKKL1	18561	chr19:49877974:+	ONLY_REF_SPLICE	YES	4	1	0.6	0.86	0.0426	0.0213	LOCAL_INVERSION:-:+:[36558],SLC6A16->chr19:49792895-49828482:-,solute_carrier_family_6_member_16,DKKL1->chr19:49865040-49878373:+,dickkopf_like_acrosomal_protein_1	HCC2450_LUNG	0.6	0.86	0.0639	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	COL1A1--MT-ATP8	4	1	COL1A1	16917	chr17:48262858:-	MT-ATP8	22225	chrM:8465:+	INCL_NON_REF_SPLICE	YES	1671	6	0	0.45	0.0426	0.0107	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2450_LUNG	0	0.45	0.0533	FALSE	1	2	0	2	0	FALSE	ACH-000975
HCC2450_LUNG	CPSF6--NTS	4	1	CPSF6	1170	chr12:69633486:+	NTS	23679	chr12:86276001:+	ONLY_REF_SPLICE	YES	148	11	0.03	0.31	0.0426	0.0107	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,NTS->chr12:86268073-86276770:+,neurotensin	HCC2450_LUNG	0.03	0.31	0.0533	TRUE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ATP6--MT-ND2	4	1	MT-ATP6	1153	chrM:8679:+	MT-ND2	5576	chrM:5364:+	INCL_NON_REF_SPLICE	YES	14635	3575	0	0	0.0426	0.0107	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC2450_LUNG	0	0	0.0533	FALSE	177	96	13	17	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ATP6--MT-ND2	4	1	MT-ATP6	1130	chrM:8656:+	MT-ND2	5517	chrM:5305:+	INCL_NON_REF_SPLICE	YES	12821	6877	0	0	0.0426	0.0107	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC2450_LUNG	0	0	0.0533	FALSE	177	96	13	17	0	FALSE	ACH-000975
HCC2450_LUNG	NPM1P24--SET	4	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	30	2342	0.14	0	0.0426	0.0107	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC2450_LUNG	0	0.14	0.0533	FALSE	0	0	0	434	0	FALSE	ACH-000975
HCC2450_LUNG	PKM--SERPINE1	3	5	PKM	19641	chr15:72491989:-	SERPINE1	23317	chr7:100770426:+	INCL_NON_REF_SPLICE	YES	2364	0	0	1	0.032	0.0533	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	HCC2450_LUNG	0	1	0.0853	FALSE	0	0	0	4	0	FALSE	ACH-000975
HCC2450_LUNG	RP11-308N19.1--RP11-308N19.4	2	9	RP11-308N19.1	7091	chr9:109350745:+	RP11-308N19.4	15583	chr9:109427034:+	ONLY_REF_SPLICE	NO	48	1	0.19	0.92	0.0213	0.0959	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	HCC2450_LUNG	0.19	0.92	0.1172	FALSE	2	0	0	5	0	FALSE	ACH-000975
HCC2450_LUNG	BDH1--AC024560.3	4	0	BDH1	8504	chr3:197260360:-	AC024560.3	36044	chr3:197320030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0426	0	LOCAL_REARRANGEMENT:-:[4890],BDH1->3-hydroxybutyrate_dehydrogenase,_type_1,chr3:197236654-197300194:-,AC024560.3->chr3:197305084-197354777:-	HCC2450_LUNG	1	1	0.0426	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	COL1A1--MT-ATP8	3	4	COL1A1	18116	chr17:48261659:-	MT-ATP8	22232	chrM:8472:+	INCL_NON_REF_SPLICE	YES	818	86	0.01	0.08	0.032	0.0426	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2450_LUNG	0.01	0.08	0.0746	FALSE	1	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	ENO1--EEF2	4	0	ENO1	11548	chr1:8923321:-	EEF2	24932	chr19:3976731:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	HCC2450_LUNG	1	1	0.0426	TRUE	0	0	0	9	0	TRUE	ACH-000975
HCC2450_LUNG	MT-ATP6--MT-ND2	4	0	MT-ATP6	1123	chrM:8649:+	MT-ND2	5567	chrM:5355:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC2450_LUNG	1	1	0.0426	FALSE	177	96	13	17	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ATP6--MT-ND2	4	0	MT-ATP6	1082	chrM:8608:+	MT-ND2	5549	chrM:5337:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC2450_LUNG	1	1	0.0426	FALSE	177	96	13	17	0	FALSE	ACH-000975
HCC2450_LUNG	STX18-AS1--LINC00504	3	4	STX18-AS1	2665	chr4:4546634:+	LINC00504	25473	chr4:14479082:-	ONLY_REF_SPLICE	YES	14	0	0.33	1	0.032	0.0426	HGNC_GENEFAM,STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,LINC00504->chr4:14472089-14889793:-,long_intergenic_non-protein_coding_RNA_504	HCC2450_LUNG	0.33	1	0.0746	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	RP11-108K3.1--GLDN	3	3	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0.032	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	HCC2450_LUNG	1	1	0.064	FALSE	0	19	0	46	0	FALSE	ACH-000975
HCC2450_LUNG	NET1--CELF2	2	6	NET1	4384	chr10:5471192:+	CELF2	21384	chr10:11291116:+	ONLY_REF_SPLICE	YES	77	70	0.09	0.1	0.0213	0.0639	NET1->Oncogene{Bushman},chr10:5454514-5500426:+,neuroepithelial_cell_transforming_1,CELF2->CUGBP,_Elav-like_family_member_2,chr10:11047259-11378674:+	HCC2450_LUNG	0.09	0.1	0.0852	TRUE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	COL1A1--MT-ATP8	3	1	COL1A1	16933	chr17:48262842:-	MT-ATP8	22232	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1466	86	0	0.04	0.032	0.0107	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2450_LUNG	0	0.04	0.0427	FALSE	1	2	0	2	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ATP6--MT-ND2	3	1	MT-ATP6	1657	chrM:9183:+	MT-ND2	5549	chrM:5337:+	INCL_NON_REF_SPLICE	NO	0	5086	1	0	0.032	0.0107	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC2450_LUNG	0	1	0.0427	FALSE	177	96	13	17	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ATP6--MT-ND2	3	1	MT-ATP6	1200	chrM:8726:+	MT-ND2	5567	chrM:5355:+	INCL_NON_REF_SPLICE	NO	17922	4108	0	0	0.032	0.0107	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC2450_LUNG	0	0	0.0427	FALSE	177	96	13	17	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ATP6--MT-ND2	3	1	MT-ATP6	1555	chrM:9081:+	MT-ND2	5549	chrM:5337:+	INCL_NON_REF_SPLICE	YES	4026	5086	0	0	0.032	0.0107	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC2450_LUNG	0	0	0.0427	FALSE	177	96	13	17	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ATP6--MT-ND2	3	1	MT-ATP6	1140	chrM:8666:+	MT-ND2	5395	chrM:5183:+	INCL_NON_REF_SPLICE	YES	13637	11995	0	0	0.032	0.0107	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC2450_LUNG	0	0	0.0427	FALSE	177	96	13	17	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ATP6--MT-ND2	3	1	MT-ATP6	1158	chrM:8684:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	15220	6655	0	0	0.032	0.0107	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC2450_LUNG	0	0	0.0427	FALSE	177	96	13	17	0	FALSE	ACH-000975
HCC2450_LUNG	TLN2--TPM1	3	1	TLN2	1160	chr15:62682884:+	TPM1	85052	chr15:63349184:+	ONLY_REF_SPLICE	YES	26	1582	0.13	0	0.032	0.0107	GTEx_FI:{Heart=[count:2=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},TLN2->chr15:62682725-63136830:+,talin_2,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	HCC2450_LUNG	0	0.13	0.0427	FALSE	2	1	0	6	0	FALSE	ACH-000975
HCC2450_LUNG	TP53BP2--RP11-504P24.5	3	1	TP53BP2	1319	chr1:224033356:-	RP11-504P24.5	26275	chr1:224222758:-	ONLY_REF_SPLICE	YES	14	0	0.22	1	0.032	0.0107	TP53BP2->Oncogene{Bushman},chr1:223967601-224033674:-,tumor_protein_p53_binding_protein_2,RP11-504P24.5->chr1:224218406-224222758:-	HCC2450_LUNG	0.22	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	VIM-AS1--FTL	3	1	VIM-AS1	1589	chr10:17271396:-	FTL	9803	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	2941	0	0	1	0.032	0.0107	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	HCC2450_LUNG	0	1	0.0427	FALSE	0	0	0	5	0	FALSE	ACH-000975
HCC2450_LUNG	XPO1--USP34	3	1	XPO1	12494	chr2:61725808:-	USP34	80630	chr2:61459667:-	ONLY_REF_SPLICE	YES	827	162	0	0.02	0.032	0.0107	NEIGHBORS[7080],XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	HCC2450_LUNG	0	0.02	0.0427	FALSE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	ZNF738--CHMP1A	3	1	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	419	524	0.01	0.01	0.032	0.0107	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HCC2450_LUNG	0.01	0.01	0.0427	FALSE	1	20	1	28	3	FALSE	ACH-000975
HCC2450_LUNG	COL1A2--PRDX1	3	0	COL1A2	12861	chr7:94040246:+	PRDX1	37189	chr1:45987556:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,PRDX1->Oncogene{Bushman},chr1:45976708-45988719:-,peroxiredoxin_1	HCC2450_LUNG	1	1	0.032	TRUE	0	0	0	2	0	TRUE	ACH-000975
HCC2450_LUNG	CTB-113P19.1--FTL	3	0	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	HCC2450_LUNG	1	1	0.032	TRUE	0	2	0	13	2	TRUE	ACH-000975
HCC2450_LUNG	MT-ATP6--MT-ND2	3	0	MT-ATP6	1108	chrM:8634:+	MT-ND2	5507	chrM:5295:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC2450_LUNG	1	1	0.032	FALSE	177	96	13	17	0	FALSE	ACH-000975
HCC2450_LUNG	MT-ATP6--MT-ND2	3	0	MT-ATP6	1116	chrM:8642:+	MT-ND2	5539	chrM:5327:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC2450_LUNG	1	1	0.032	FALSE	177	96	13	17	0	FALSE	ACH-000975
HCC2450_LUNG	NME7--RP11-1113L8.1	3	0	NME7	1260	chr1:169336946:-	RP11-1113L8.1	25924	chr17:19467942:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,RP11-1113L8.1->chr17:19463424-19501235:-	HCC2450_LUNG	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	RP11-120D5.1--MID1	3	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC2450_LUNG	1	1	0.032	FALSE	16	356	14	466	0	FALSE	ACH-000975
HCC2450_LUNG	RP11-308N19.1--RP11-308N19.4	1	8	RP11-308N19.1	6003	chr9:109320864:+	RP11-308N19.4	13391	chr9:109400440:+	ONLY_REF_SPLICE	YES	55	1	0.14	0.9	0.0107	0.0853	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	HCC2450_LUNG	0.14	0.9	0.096	FALSE	0	0	0	3	0	FALSE	ACH-000975
HCC2450_LUNG	RNF144B--KDM1B	2	3	RNF144B	2552	chr6:18387861:+	KDM1B	36905	chr6:18213887:+	ONLY_REF_SPLICE	YES	48	69	0.09	0.07	0.0213	0.032	RNF144B->chr6:18368779-18469105:+,ring_finger_protein_144B,KDM1B->chr6:18155560-18224084:+,lysine_demethylase_1B	HCC2450_LUNG	0.07	0.09	0.0533	TRUE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	COL8A1--CMSS1	2	2	COL8A1	2252	chr3:99394565:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	NO	253	559	0.02	0.01	0.0213	0.0213	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HCC2450_LUNG	0.01	0.02	0.0426	FALSE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	LYVE1--SBF2	2	2	LYVE1	2394	chr11:10589995:-	SBF2	42468	chr11:9871765:-	ONLY_REF_SPLICE	YES	0	23	1	0.15	0.0213	0.0213	LYVE1->chr11:10578513-10633236:-,lymphatic_vessel_endothelial_hyaluronan_receptor_1,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	HCC2450_LUNG	0.15	1	0.0426	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	RP11-308N19.1--RP11-308N19.4	1	6	RP11-308N19.1	4891	chr9:109262786:+	RP11-308N19.4	15583	chr9:109427034:+	ONLY_REF_SPLICE	NO	71	1	0.09	0.88	0.0107	0.0639	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	HCC2450_LUNG	0.09	0.88	0.0746	FALSE	0	0	0	4	0	FALSE	ACH-000975
HCC2450_LUNG	STX18-AS1--LINC00504	1	6	STX18-AS1	2665	chr4:4546634:+	LINC00504	22011	chr4:14630604:-	ONLY_REF_SPLICE	YES	14	0	0.33	1	0.0107	0.0639	HGNC_GENEFAM,STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,LINC00504->chr4:14472089-14889793:-,long_intergenic_non-protein_coding_RNA_504	HCC2450_LUNG	0.33	1	0.0746	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	DHX40--VMP1	1	5	DHX40	9582	chr17:57657240:+	VMP1	33457	chr17:57886157:+	ONLY_REF_SPLICE	YES	98	84	0.06	0.07	0.0107	0.0533	NEIGHBORS[98847],DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HCC2450_LUNG	0.06	0.07	0.064	FALSE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	MAP4K5--C14orf182	2	1	MAP4K5	15247	chr14:50929383:-	C14orf182	49016	chr14:50449022:-	ONLY_REF_SPLICE	YES	86	0	0.03	1	0.0213	0.0107	MAP4K5->chr14:50885219-51027844:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_5,C14orf182->chr14:50448430-50474238:-	HCC2450_LUNG	0.03	1	0.032	TRUE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	MB21D2--FGF12	2	1	MB21D2	1532	chr3:192635419:-	FGF12	15589	chr3:192053253:-	ONLY_REF_SPLICE	YES	115	1	0.03	0.75	0.0213	0.0107	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	HCC2450_LUNG	0.03	0.75	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	NET1--CELF2	1	5	NET1	3324	chr10:5468684:+	CELF2	20301	chr10:11259388:+	ONLY_REF_SPLICE	YES	86	67	0.07	0.08	0.0107	0.0533	NET1->Oncogene{Bushman},chr10:5454514-5500426:+,neuroepithelial_cell_transforming_1,CELF2->CUGBP,_Elav-like_family_member_2,chr10:11047259-11378674:+	HCC2450_LUNG	0.07	0.08	0.064	TRUE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	ABI3BP--AC079117.1	2	0	ABI3BP	32813	chr3:100551108:-	AC079117.1	74523	chr2:77214532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	ABI3BP->ABI_family_member_3_binding_protein,chr3:100468000-100712359:-,AC079117.1->chr2:77213091-77236917:+	HCC2450_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	CYP24A1--RRP15	2	0	CYP24A1	10936	chr20:52773708:-	RRP15	21269	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	HCC2450_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	DEGS1--CEP72	2	0	DEGS1	2440	chr1:224371120:+	CEP72	22412	chr5:647920:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	DEGS1->chr1:224363458-224381143:+,delta(4)-desaturase,_sphingolipid_1,CEP72->centrosomal_protein_72,chr5:612387-667283:+	HCC2450_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	PIGK--ZZZ3	2	0	PIGK	9202	chr1:77620134:-	ZZZ3	27682	chr1:78050340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	PIGK->chr1:77554675-77685115:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_K,ZZZ3->chr1:78028101-78149104:-,zinc_finger_ZZ-type_containing_3	HCC2450_LUNG	1	1	0.0213	TRUE	0	0	0	2	0	TRUE	ACH-000975
HCC2450_LUNG	RP11-120D5.1--MID1	2	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC2450_LUNG	1	1	0.0213	FALSE	0	48	1	163	0	FALSE	ACH-000975
HCC2450_LUNG	RP11-463D19.2--TCEB1	2	0	RP11-463D19.2	1047	chr8:74791043:-	TCEB1	16412	chr8:74872053:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_REARRANGEMENT:-:[60315],RP11-463D19.2->chr8:74600926-74791089:-,TCEB1->chr8:74851404-74884522:-,transcription_elongation_factor_B_subunit_1	HCC2450_LUNG	1	1	0.0213	TRUE	1	0	0	2	0	TRUE	ACH-000975
HCC2450_LUNG	TP53BP2--RP11-504P24.5	2	0	TP53BP2	1319	chr1:224033356:-	RP11-504P24.5	28428	chr1:224218498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	TP53BP2->Oncogene{Bushman},chr1:223967601-224033674:-,tumor_protein_p53_binding_protein_2,RP11-504P24.5->chr1:224218406-224222758:-	HCC2450_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	TUFT1--CAV1	2	0	TUFT1	1122	chr1:151512902:+	CAV1	21211	chr7:116199000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	TUFT1->chr1:151512781-151556059:+,tuftelin_1,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	HCC2450_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	RP11-108K3.1--GLDN	1	3	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0107	0.032	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	HCC2450_LUNG	0.8	1	0.0427	FALSE	0	14	0	30	0	FALSE	ACH-000975
HCC2450_LUNG	RP11-308N19.1--RP11-308N19.4	1	3	RP11-308N19.1	4891	chr9:109262786:+	RP11-308N19.4	18874	chr9:109435150:+	ONLY_REF_SPLICE	YES	71	1	0.05	0.8	0.0107	0.032	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	HCC2450_LUNG	0.05	0.8	0.0427	FALSE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	RP11-308N19.1--RP11-308N19.4	1	3	RP11-308N19.1	6003	chr9:109320864:+	RP11-308N19.4	18874	chr9:109435150:+	ONLY_REF_SPLICE	NO	55	1	0.07	0.8	0.0107	0.032	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	HCC2450_LUNG	0.07	0.8	0.0427	FALSE	0	0	0	3	0	FALSE	ACH-000975
HCC2450_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0107	0.032	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC2450_LUNG	1	1	0.0427	FALSE	192	492	57	212	0	FALSE	ACH-000975
HCC2450_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0107	0.032	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC2450_LUNG	0.8	1	0.0427	FALSE	515	4851	409	746	0	FALSE	ACH-000975
HCC2450_LUNG	CTC-301O7.4--DKKL1	1	2	CTC-301O7.4	2704	chr19:49835311:-	DKKL1	11078	chr19:49877974:+	ONLY_REF_SPLICE	NO	9	1	0.25	0.75	0.0107	0.0213	LOCAL_INVERSION:-:+:[21175],CTC-301O7.4->chr19:49834874-49843865:-,DKKL1->chr19:49865040-49878373:+,dickkopf_like_acrosomal_protein_1	HCC2450_LUNG	0.25	0.75	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	CTC-301O7.4--DKKL1	1	2	CTC-301O7.4	3141	chr19:49834874:-	DKKL1	11078	chr19:49877974:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0107	0.0213	LOCAL_INVERSION:-:+:[21175],CTC-301O7.4->chr19:49834874-49843865:-,DKKL1->chr19:49865040-49878373:+,dickkopf_like_acrosomal_protein_1	HCC2450_LUNG	0.75	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	IGF2BP2--TRA2B	1	2	IGF2BP2	3513	chr3:185538800:-	TRA2B	30253	chr3:185649640:-	ONLY_REF_SPLICE	YES	351	1036	0.01	0	0.0107	0.0213	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	HCC2450_LUNG	0	0.01	0.032	FALSE	0	0	0	5	0	FALSE	ACH-000975
HCC2450_LUNG	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0107	0.0213	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	HCC2450_LUNG	1	1	0.032	FALSE	0	30	1	55	0	FALSE	ACH-000975
HCC2450_LUNG	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0107	0.0213	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	HCC2450_LUNG	0.75	1	0.032	FALSE	1	20	0	46	0	FALSE	ACH-000975
HCC2450_LUNG	RP11-308N19.1--RP11-308N19.4	1	2	RP11-308N19.1	1799	chr9:109041471:+	RP11-308N19.4	18874	chr9:109435150:+	ONLY_REF_SPLICE	YES	49	1	0.06	0.75	0.0107	0.0213	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	HCC2450_LUNG	0.06	0.75	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	SLC6A16--DKKL1	1	2	SLC6A16	3939	chr19:49812908:-	DKKL1	18561	chr19:49877974:+	ONLY_REF_SPLICE	NO	8	1	0.27	0.75	0.0107	0.0213	LOCAL_INVERSION:-:+:[36558],SLC6A16->chr19:49792895-49828482:-,solute_carrier_family_6_member_16,DKKL1->chr19:49865040-49878373:+,dickkopf_like_acrosomal_protein_1	HCC2450_LUNG	0.27	0.75	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	ABCC1--LUC7L2	1	1	ABCC1	25239	chr16:16196574:+	LUC7L2	47440	chr7:139083345:+	ONLY_REF_SPLICE	YES	77	59	0.03	0.03	0.0107	0.0107	ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	HCC2450_LUNG	0.03	0.03	0.0214	TRUE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	AC002066.1--CAV1	1	1	AC002066.1	1112	chr7:116139408:-	CAV1	14768	chr7:116199000:+	ONLY_REF_SPLICE	YES	8	8238	0.2	0	0.0107	0.0107	LOCAL_INVERSION:-:+:[25320],AC002066.1->chr7:115878314-116139519:-,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	HCC2450_LUNG	0	0.2	0.0214	FALSE	0	0	1	6	0	FALSE	ACH-000975
HCC2450_LUNG	CALR--COL1A1	1	1	CALR	3077	chr19:13051468:+	COL1A1	15818	chr17:48271544:-	ONLY_REF_SPLICE	YES	5789	4544	0	0	0.0107	0.0107	GTEx&tcga_normals:2/3694=0.05%,CALR->calreticulin,chr19:13049392-13055303:+,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HCC2450_LUNG	0	0	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	CD44--PDHX	1	1	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	1667	112	0	0.02	0.0107	0.0107	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HCC2450_LUNG	0	0.02	0.0214	FALSE	0	20	0	35	2	FALSE	ACH-000975
HCC2450_LUNG	CTD-3105H18.16--BMPR1A	1	1	CTD-3105H18.16	1171	chr19:12551726:-	BMPR1A	10137	chr10:88635624:+	ONLY_REF_SPLICE	YES	6	36	0.25	0.05	0.0107	0.0107	CTD-3105H18.16->chr19:12502763-12551896:-,BMPR1A->Oncogene{Bushman},bone_morphogenetic_protein_receptor_type_1A,chr10:88516407-88692595:+	HCC2450_LUNG	0.05	0.25	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	CYP24A1--DAP3	1	1	CYP24A1	10936	chr20:52773708:-	DAP3	31914	chr1:155708400:+	ONLY_REF_SPLICE	NO	1661	18	0	0.1	0.0107	0.0107	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	HCC2450_LUNG	0	0.1	0.0214	FALSE	0	1	0	3	0	FALSE	ACH-000975
HCC2450_LUNG	CYP24A1--GGA2	1	1	CYP24A1	10936	chr20:52773708:-	GGA2	36125	chr16:23478099:-	ONLY_REF_SPLICE	YES	1661	124	0	0.02	0.0107	0.0107	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,GGA2->chr16:23474863-23533316:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_2	HCC2450_LUNG	0	0.02	0.0214	FALSE	0	4	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	DIP2C--ZMYND11	1	1	DIP2C	1250	chr10:735434:-	ZMYND11	52575	chr10:225934:+	ONLY_REF_SPLICE	YES	23	39	0.08	0.05	0.0107	0.0107	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[19553],DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	HCC2450_LUNG	0.05	0.08	0.0214	TRUE	0	0	0	5	0	FALSE	ACH-000975
HCC2450_LUNG	EIF2S2--RALY	1	1	EIF2S2	1237	chr20:32699902:-	RALY	16412	chr20:32619328:+	ONLY_REF_SPLICE	YES	908	1331	0	0	0.0107	0.0107	NEIGHBORS_OVERLAP:-:+:[20010],EIF2S2->chr20:32676104-32700138:-,eukaryotic_translation_initiation_factor_2_subunit_beta,RALY->RALY_heterogeneous_nuclear_ribonucleoprotein,chr20:32581452-32696114:+	HCC2450_LUNG	0	0	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	FANCD2--SRP9	1	1	FANCD2	35472	chr3:10133936:+	SRP9	46400	chr1:225965637:+	ONLY_REF_SPLICE	YES	121	82	0.02	0.02	0.0107	0.0107	FANCD2->ArcherDX_panel,Fanconi_anemia_complementation_group_D2,FoundationOne_panel,Oncogene{Bushman},chr3:10068098-10143614:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	HCC2450_LUNG	0.02	0.02	0.0214	TRUE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	FRMD4A--FAM107B	1	1	FRMD4A	4125	chr10:14372057:-	FAM107B	61917	chr10:14572514:-	ONLY_REF_SPLICE	YES	7	8	0.22	0.2	0.0107	0.0107	LOCAL_REARRANGEMENT:-:[56415],FRMD4A->FERM_domain_containing_4A,chr10:13685706-14504141:-,FAM107B->chr10:14560556-14816896:-,family_with_sequence_similarity_107_member_B	HCC2450_LUNG	0.2	0.22	0.0214	TRUE	0	1	0	3	1	TRUE	ACH-000975
HCC2450_LUNG	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	3	1	0.4	0.67	0.0107	0.0107	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC2450_LUNG	0.4	0.67	0.0214	FALSE	25	145	6	90	0	FALSE	ACH-000975
HCC2450_LUNG	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	5	1	0.29	0.67	0.0107	0.0107	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC2450_LUNG	0.29	0.67	0.0214	FALSE	8	57	1	47	0	FALSE	ACH-000975
HCC2450_LUNG	RAB18--PSMD1	1	1	RAB18	2979	chr10:27798859:+	PSMD1	36473	chr2:232010954:+	ONLY_REF_SPLICE	YES	517	254	0	0.01	0.0107	0.0107	RAB18->RAB18,_member_RAS_oncogene_family,chr10:27793197-27831143:+,PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1	HCC2450_LUNG	0	0.01	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	RBMS3--STT3B	1	1	RBMS3	1775	chr3:29323247:+	STT3B	38965	chr3:31656597:+	ONLY_REF_SPLICE	YES	32	375	0.06	0.01	0.0107	0.0107	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Vagina=1},RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+,STT3B->STT3B,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr3:31574130-31679112:+	HCC2450_LUNG	0.01	0.06	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	RBMS3--STT3B	1	1	RBMS3	1775	chr3:29323247:+	STT3B	36799	chr3:31638290:+	ONLY_REF_SPLICE	YES	32	383	0.06	0.01	0.0107	0.0107	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Vagina=1},RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+,STT3B->STT3B,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr3:31574130-31679112:+	HCC2450_LUNG	0.01	0.06	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	SIRT6--ANKRD24	1	1	SIRT6	5152	chr19:4177076:-	ANKRD24	14883	chr19:4199872:+	ONLY_REF_SPLICE	YES	196	3	0.01	0.4	0.0107	0.0107	LOCAL_INVERSION:-:+:[750],SIRT6->chr19:4174106-4182601:-,sirtuin_6,ANKRD24->ankyrin_repeat_domain_24,chr19:4183351-4224811:+	HCC2450_LUNG	0.01	0.4	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	SLC6A16--DKKL1	1	1	SLC6A16	3237	chr19:49813610:-	DKKL1	18561	chr19:49877974:+	ONLY_REF_SPLICE	YES	9	1	0.18	0.67	0.0107	0.0107	LOCAL_INVERSION:-:+:[36558],SLC6A16->chr19:49792895-49828482:-,solute_carrier_family_6_member_16,DKKL1->chr19:49865040-49878373:+,dickkopf_like_acrosomal_protein_1	HCC2450_LUNG	0.18	0.67	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000975
HCC2450_LUNG	SPC24--RGL3	1	1	SPC24	1192	chr19:11266293:-	RGL3	19190	chr19:11513382:-	ONLY_REF_SPLICE	YES	159	14	0.01	0.12	0.0107	0.0107	SPC24->SPC24,_NDC80_kinetochore_complex_component,chr19:11242196-11266484:-,RGL3->chr19:11495017-11530018:-,ral_guanine_nucleotide_dissociation_stimulator_like_3	HCC2450_LUNG	0.01	0.12	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0107	0.0107	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC2450_LUNG	1	1	0.0214	TRUE	62	24	1	171	0	FALSE	ACH-000975
HCC2450_LUNG	TMEM209--CEP290	1	1	TMEM209	16182	chr7:129810240:-	CEP290	24235	chr12:88533341:-	ONLY_REF_SPLICE	YES	54	37	0.04	0.05	0.0107	0.0107	TMEM209->chr7:129804555-129847610:-,transmembrane_protein_209,CEP290->centrosomal_protein_290,chr12:88442793-88535993:-	HCC2450_LUNG	0.04	0.05	0.0214	TRUE	0	0	0	1	0	FALSE	ACH-000975
HCC2450_LUNG	ZNF738--DAP3	1	1	ZNF738	7035	chr19:21558766:+	DAP3	28866	chr1:155708400:+	ONLY_REF_SPLICE	YES	419	18	0	0.1	0.0107	0.0107	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	HCC2450_LUNG	0	0.1	0.0214	FALSE	0	0	0	4	0	FALSE	ACH-000975
HS934T_FIBROBLAST	COL1A1--FN1	467	58	COL1A1	12966	chr17:48266809:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	NO	13283	6480	0.04	0.07	5.5331	0.6872	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS934T_FIBROBLAST	0.04	0.07	6.2203	TRUE	0	0	0	17	0	FALSE	ACH-000194
HS934T_FIBROBLAST	FN1--COL1A1	292	5	FN1	36954	chr2:216243980:-	COL1A1	69586	chr17:48264124:-	INCL_NON_REF_SPLICE	YES	9209	10410	0.03	0.03	3.4597	0.0592	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS934T_FIBROBLAST	0.03	0.03	3.5189	TRUE	0	0	0	13	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A1--FN1	138	13	COL1A1	5208	chr17:48274567:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	NO	10687	6480	0.01	0.02	1.635	0.154	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS934T_FIBROBLAST	0.01	0.02	1.789	FALSE	0	0	0	9	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A1--COL6A2	118	7	COL1A1	16432	chr17:48263343:-	COL6A2	37084	chr21:47545746:+	INCL_NON_REF_SPLICE	YES	10473	3014	0.01	0.04	1.3981	0.0829	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS934T_FIBROBLAST	0.01	0.04	1.481	TRUE	0	1	0	1	1	FALSE	ACH-000194
HS934T_FIBROBLAST	TIMM23B--LINC00843	74	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8768	0.3081	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS934T_FIBROBLAST	1	1	1.1849	TRUE	508	994	45	981	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A1--COL6A2	55	1	COL1A1	5797	chr17:48273978:-	COL6A2	36137	chr21:47544799:+	ONLY_REF_SPLICE	YES	11674	3095	0	0.02	0.6516	0.0118	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS934T_FIBROBLAST	0	0.02	0.6634	TRUE	0	0	0	6	0	FALSE	ACH-000194
HS934T_FIBROBLAST	TIMM23--RP11-464F9.1	45	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	196	7	0.2	0.88	0.5332	0.0592	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS934T_FIBROBLAST	0.2	0.88	0.5924	TRUE	519	3926	326	965	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A1--FN1	3	99	COL1A1	14310	chr17:48265465:-	FN1	22230	chr2:216300791:-	INCL_NON_REF_SPLICE	YES	11991	0	0.01	1	0.0355	1.173	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS934T_FIBROBLAST	0.01	1	1.2085	TRUE	0	0	0	7	0	FALSE	ACH-000194
HS934T_FIBROBLAST	MT-TA--MT-TC	23	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2725	0.0237	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS934T_FIBROBLAST	1	1	0.2962	FALSE	462	80	0	856	0	FALSE	ACH-000194
HS934T_FIBROBLAST	PLXDC1--TAF13	23	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2725	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS934T_FIBROBLAST	1	1	0.2725	TRUE	7	10	0	216	0	FALSE	ACH-000194
HS934T_FIBROBLAST	RP11-680G10.1--GSE1	20	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	11	1	0.69	0.237	0.0592	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS934T_FIBROBLAST	0.69	1	0.2962	TRUE	465	1949	224	605	0	FALSE	ACH-000194
HS934T_FIBROBLAST	FN1--COL1A1	18	8	FN1	12511	chr2:216285416:-	COL1A1	54970	chr17:48278959:-	INCL_NON_REF_SPLICE	YES	8418	0	0	1	0.2133	0.0948	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS934T_FIBROBLAST	0	1	0.3081	TRUE	0	0	0	5	0	FALSE	ACH-000194
HS934T_FIBROBLAST	MT-ND6--MT-TE	18	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2133	0.0592	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS934T_FIBROBLAST	1	1	0.2725	FALSE	499	1288	110	792	0	FALSE	ACH-000194
HS934T_FIBROBLAST	RP11-680G10.1--GSE1	17	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0.0592	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS934T_FIBROBLAST	1	1	0.2606	TRUE	458	1351	185	561	0	FALSE	ACH-000194
HS934T_FIBROBLAST	KANSL1--ARL17B	16	7	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	15	10	0.61	0.7	0.1896	0.0829	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HS934T_FIBROBLAST	0.61	0.7	0.2725	TRUE	181	1564	124	196	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A1--FN1	7	39	COL1A1	15650	chr17:48264125:-	FN1	58080	chr2:216243979:-	INCL_NON_REF_SPLICE	YES	10449	9232	0	0	0.0829	0.4621	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS934T_FIBROBLAST	0	0	0.545	TRUE	0	0	0	18	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A1--COL6A2	13	14	COL1A1	9774	chr17:48270001:-	COL6A2	29401	chr21:47537350:+	INCL_NON_REF_SPLICE	NO	12780	2625	0	0.01	0.154	0.1659	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS934T_FIBROBLAST	0	0.01	0.3199	FALSE	0	0	0	6	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A1--FN1	3	54	COL1A1	12718	chr17:48267057:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	14666	6480	0	0.01	0.0355	0.6398	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS934T_FIBROBLAST	0	0.01	0.6753	TRUE	0	0	0	17	0	FALSE	ACH-000194
HS934T_FIBROBLAST	SF3B1--COL1A2	14	1	SF3B1	11321	chr2:198270103:-	COL1A2	48672	chr7:94049941:+	INCL_NON_REF_SPLICE	NO	189	8078	0.07	0	0.1659	0.0118	SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS934T_FIBROBLAST	0	0.07	0.1777	FALSE	0	0	0	3	0	FALSE	ACH-000194
HS934T_FIBROBLAST	MT-ND6--MT-TE	12	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1422	0.0592	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS934T_FIBROBLAST	1	1	0.2014	FALSE	499	1288	110	792	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A1--FN1	6	28	COL1A1	13456	chr17:48266319:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	12131	10300	0	0	0.0711	0.3317	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS934T_FIBROBLAST	0	0	0.4028	TRUE	0	0	0	16	0	FALSE	ACH-000194
HS934T_FIBROBLAST	RP1-34H18.1--NAV3	12	3	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	2	1	0.88	0.1422	0.0355	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HS934T_FIBROBLAST	0.88	1	0.1777	TRUE	254	575	65	124	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A2--COL6A3	10	8	COL1A2	23745	chr7:94051264:+	COL6A3	58044	chr2:238269817:-	ONLY_REF_SPLICE	YES	10648	2751	0	0.01	0.1185	0.0948	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HS934T_FIBROBLAST	0	0.01	0.2133	TRUE	0	0	0	1	0	FALSE	ACH-000194
HS934T_FIBROBLAST	SERPINE1--MT-ND4	12	0	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1422	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HS934T_FIBROBLAST	1	1	0.1422	FALSE	1	0	0	29	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A1--FN1	6	17	COL1A1	12367	chr17:48267408:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	13725	10300	0	0	0.0711	0.2014	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS934T_FIBROBLAST	0	0	0.2725	TRUE	0	0	0	13	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A1--COL6A2	3	26	COL1A1	13854	chr17:48265921:-	COL6A2	28750	chr21:47536699:+	INCL_NON_REF_SPLICE	YES	11696	2656	0	0.01	0.0355	0.3081	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS934T_FIBROBLAST	0	0.01	0.3436	TRUE	0	1	0	2	0	FALSE	ACH-000194
HS934T_FIBROBLAST	NEAT1--PCNXL3	7	4	NEAT1	2738	chr11:65191982:+	PCNXL3	42233	chr11:65401597:+	INCL_NON_REF_SPLICE	YES	814	37	0.01	0.23	0.0829	0.0474	NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding),PCNXL3->chr11:65383244-65404910:+	HS934T_FIBROBLAST	0.01	0.23	0.1303	TRUE	0	0	0	1	0	FALSE	ACH-000194
HS934T_FIBROBLAST	MT-ND6--MT-TE	6	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0711	0.0711	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS934T_FIBROBLAST	0.92	1	0.1422	FALSE	499	1288	110	792	0	FALSE	ACH-000194
HS934T_FIBROBLAST	PRR16--CTD-2334D19.1	7	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	90	0	0.08	1	0.0829	0.0118	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS934T_FIBROBLAST	0.08	1	0.0947	FALSE	56	216	12	147	0	FALSE	ACH-000194
HS934T_FIBROBLAST	FN1--COL1A1	3	14	FN1	40452	chr2:216239982:-	COL1A1	65986	chr17:48267724:-	INCL_NON_REF_SPLICE	YES	10282	14475	0	0	0.0355	0.1659	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS934T_FIBROBLAST	0	0	0.2014	TRUE	0	0	0	1	0	FALSE	ACH-000194
HS934T_FIBROBLAST	FN1--COL1A1	4	8	FN1	40453	chr2:216239981:-	COL1A1	68456	chr17:48265254:-	INCL_NON_REF_SPLICE	YES	10299	11232	0	0	0.0474	0.0948	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS934T_FIBROBLAST	0	0	0.1422	TRUE	0	0	0	1	0	FALSE	ACH-000194
HS934T_FIBROBLAST	LIX1L--HFE2	5	2	LIX1L	3671	chr1:145492375:+	HFE2	14919	chr1:145416313:+	ONLY_REF_SPLICE	YES	77	0	0.08	1	0.0592	0.0237	LOCAL_REARRANGEMENT:+:[59540],LIX1L->chr1:145477085-145501669:+,limb_and_CNS_expressed_1_like,HFE2->chr1:145413095-145417545:+,hemochromatosis_type_2_(juvenile)	HS934T_FIBROBLAST	0.08	1	0.0829	TRUE	0	0	0	1	0	TRUE	ACH-000194
HS934T_FIBROBLAST	COL1A1--COL6A2	5	1	COL1A1	6101	chr17:48273674:-	COL6A2	36129	chr21:47544791:+	INCL_NON_REF_SPLICE	YES	12213	3330	0	0	0.0592	0.0118	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS934T_FIBROBLAST	0	0	0.071	FALSE	0	0	0	6	0	FALSE	ACH-000194
HS934T_FIBROBLAST	SF3B1--COL1A2	5	1	SF3B1	11321	chr2:198270103:-	COL1A2	48681	chr7:94049950:+	INCL_NON_REF_SPLICE	NO	189	7918	0.03	0	0.0592	0.0118	SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS934T_FIBROBLAST	0	0.03	0.071	FALSE	0	0	0	3	0	FALSE	ACH-000194
HS934T_FIBROBLAST	SF3B1--COL1A2	5	1	SF3B1	11320	chr2:198270104:-	COL1A2	48581	chr7:94049850:+	INCL_NON_REF_SPLICE	NO	190	9173	0.03	0	0.0592	0.0118	SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS934T_FIBROBLAST	0	0.03	0.071	FALSE	0	0	0	3	0	FALSE	ACH-000194
HS934T_FIBROBLAST	ABI3BP--MT-ND4L	5	0	ABI3BP	62785	chr3:100489642:-	MT-ND4L	73487	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0	ABI3BP->ABI_family_member_3_binding_protein,chr3:100468000-100712359:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS934T_FIBROBLAST	1	1	0.0592	FALSE	0	0	0	2	0	FALSE	ACH-000194
HS934T_FIBROBLAST	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0592	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS934T_FIBROBLAST	1	1	0.0592	FALSE	292	1546	117	613	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A2--SERPINE1	4	3	COL1A2	27588	chr7:94055107:+	SERPINE1	44390	chr7:100781282:+	INCL_NON_REF_SPLICE	YES	9306	3765	0	0	0.0474	0.0355	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	HS934T_FIBROBLAST	0	0	0.0829	FALSE	0	0	0	2	0	FALSE	ACH-000194
HS934T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0474	0.0237	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS934T_FIBROBLAST	0.86	1	0.0711	FALSE	407	2205	196	549	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A1--COL6A2	1	13	COL1A1	13672	chr17:48266103:-	COL6A2	33026	chr21:47540975:+	ONLY_REF_SPLICE	YES	12044	2672	0	0.01	0.0118	0.154	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS934T_FIBROBLAST	0	0.01	0.1658	TRUE	0	0	0	1	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A1--COL6A2	4	1	COL1A1	4465	chr17:48275310:-	COL6A2	35912	chr21:47544574:+	INCL_NON_REF_SPLICE	NO	9334	3093	0	0	0.0474	0.0118	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS934T_FIBROBLAST	0	0	0.0592	FALSE	0	0	0	2	0	FALSE	ACH-000194
HS934T_FIBROBLAST	NEAT1--PCNXL3	4	1	NEAT1	1884	chr11:65191128:+	PCNXL3	42235	chr11:65401599:+	INCL_NON_REF_SPLICE	YES	714	36	0.01	0.12	0.0474	0.0118	NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding),PCNXL3->chr11:65383244-65404910:+	HS934T_FIBROBLAST	0.01	0.12	0.0592	FALSE	0	0	0	1	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A1--COL6A2	1	12	COL1A1	14930	chr17:48264845:-	COL6A2	36137	chr21:47544799:+	ONLY_REF_SPLICE	NO	11964	3095	0	0	0.0118	0.1422	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS934T_FIBROBLAST	0	0	0.154	TRUE	0	2	0	2	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A1--COL6A2	4	0	COL1A1	2548	chr17:48277227:-	COL6A2	37395	chr21:47546057:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS934T_FIBROBLAST	1	1	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000194
HS934T_FIBROBLAST	JUND--MT2A	4	0	JUND	1481	chr19:18391952:-	MT2A	6254	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	JUND->JunD_proto-oncogene,_AP-1_transcription_factor_subunit,Oncogene{Bushman},chr19:18390563-18392432:-,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS934T_FIBROBLAST	1	1	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000194
HS934T_FIBROBLAST	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS934T_FIBROBLAST	1	1	0.0474	FALSE	462	80	0	856	0	FALSE	ACH-000194
HS934T_FIBROBLAST	SF3B1--COL1A2	3	1	SF3B1	11319	chr2:198270105:-	COL1A2	48668	chr7:94049937:+	INCL_NON_REF_SPLICE	NO	191	7904	0.02	0	0.0355	0.0118	SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS934T_FIBROBLAST	0	0.02	0.0473	FALSE	0	0	0	3	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A1--COL6A2	2	3	COL1A1	6847	chr17:48272928:-	COL6A2	36137	chr21:47544799:+	ONLY_REF_SPLICE	NO	12725	3095	0	0	0.0237	0.0355	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS934T_FIBROBLAST	0	0	0.0592	FALSE	0	0	0	1	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A1--COL6A2	2	1	COL1A1	5797	chr17:48273978:-	COL6A2	32480	chr21:47540429:+	ONLY_REF_SPLICE	YES	11674	2617	0	0	0.0237	0.0118	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS934T_FIBROBLAST	0	0	0.0355	FALSE	0	0	0	2	0	FALSE	ACH-000194
HS934T_FIBROBLAST	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS934T_FIBROBLAST	1	1	0.0237	TRUE	347	1186	183	220	0	FALSE	ACH-000194
HS934T_FIBROBLAST	PROSC--CHMP1A	2	0	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HS934T_FIBROBLAST	1	1	0.0237	TRUE	13	55	3	29	0	FALSE	ACH-000194
HS934T_FIBROBLAST	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS934T_FIBROBLAST	1	1	0.0237	TRUE	477	1352	189	275	0	FALSE	ACH-000194
HS934T_FIBROBLAST	COL1A1--COL6A2	1	3	COL1A1	8471	chr17:48271304:-	COL6A2	36717	chr21:47545379:+	ONLY_REF_SPLICE	NO	13779	3364	0	0	0.0118	0.0355	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS934T_FIBROBLAST	0	0	0.0473	FALSE	0	1	0	1	0	FALSE	ACH-000194
HS934T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0118	0.0237	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS934T_FIBROBLAST	0.75	1	0.0355	FALSE	275	511	55	178	0	FALSE	ACH-000194
HS934T_FIBROBLAST	C17orf75--SIRT6	1	1	C17orf75	3148	chr17:30668223:-	SIRT6	17757	chr19:4179283:-	ONLY_REF_SPLICE	YES	39	73	0.05	0.03	0.0118	0.0118	C17orf75->chr17:30651584-30677042:-,chromosome_17_open_reading_frame_75,SIRT6->chr19:4174106-4182601:-,sirtuin_6	HS934T_FIBROBLAST	0.03	0.05	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000194
HS934T_FIBROBLAST	CTC-786C10.1--GSE1	1	1	CTC-786C10.1	1532	chr16:85205413:+	GSE1	8143	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0118	0.0118	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS934T_FIBROBLAST	1	1	0.0236	TRUE	5	1	0	10	0	FALSE	ACH-000194
HS934T_FIBROBLAST	FAM168B--PLEKHB2	1	1	FAM168B	2328	chr2:131840150:-	PLEKHB2	19965	chr2:131883326:+	ONLY_REF_SPLICE	YES	92	136	0.02	0.01	0.0118	0.0118	LOCAL_INVERSION:-:+:[11387],FAM168B->chr2:131805449-131851033:-,family_with_sequence_similarity_168_member_B,PLEKHB2->chr2:131862420-132111282:+,pleckstrin_homology_domain_containing_B2	HS934T_FIBROBLAST	0.01	0.02	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000194
HS934T_FIBROBLAST	NEAT1--PCNXL3	1	1	NEAT1	1610	chr11:65190854:+	PCNXL3	42233	chr11:65401597:+	ONLY_REF_SPLICE	YES	923	37	0	0.05	0.0118	0.0118	NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding),PCNXL3->chr11:65383244-65404910:+	HS934T_FIBROBLAST	0	0.05	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000194
HS934T_FIBROBLAST	PRR16--CTD-2334D19.1	1	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	90	0	0.02	1	0.0118	0.0118	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS934T_FIBROBLAST	0.02	1	0.0236	FALSE	1	13	0	24	0	FALSE	ACH-000194
HS934T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.67	0.67	0.0118	0.0118	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS934T_FIBROBLAST	0.67	0.67	0.0236	FALSE	515	4851	409	746	0	FALSE	ACH-000194
HS934T_FIBROBLAST	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0118	0.0118	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS934T_FIBROBLAST	1	1	0.0236	TRUE	62	24	1	171	0	FALSE	ACH-000194
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	330	114	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	66	111	0.87	0.8	2.7892	0.9635	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.87	3.7527	TRUE	181	1564	124	196	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	208	66	BCR	21553	chr22:23632600:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	24	0	0.92	1	1.758	0.5578	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	2.3158	TRUE	0	2	1	16	2	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	180	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5214	0.262	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.7834	TRUE	508	994	45	981	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	105	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	139	1	0.43	0.99	0.8875	0.0085	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.99	0.896	TRUE	519	3926	326	965	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	85	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7184	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7184	TRUE	0	0	0	518	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	70	27	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	0	19	1	0.84	0.5916	0.2282	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	1	0.8198	TRUE	0	2	0	9	2	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	32	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2705	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2705	FALSE	13	9	0	364	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	25	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2113	0.0085	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2198	FALSE	462	80	0	856	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	21	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1775	0.0592	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2367	FALSE	499	1288	110	792	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	3	65	BCR	21553	chr22:23632600:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	24	0	0.74	1	0.0254	0.5494	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	0.5748	TRUE	0	2	1	16	2	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	18	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1521	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1521	FALSE	13	9	0	364	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	12	15	ABL1	1510	chr9:133589842:+	BCR	43197	chr22:23637211:+	ONLY_REF_SPLICE	YES	0	30	1	0.47	0.1014	0.1268	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.2282	TRUE	0	0	0	6	0	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	9	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1099	0.0761	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.186	FALSE	499	1288	110	792	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	3	38	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	29	0	0.59	1	0.0254	0.3212	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.3466	TRUE	0	2	1	16	2	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.093	0.0338	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1268	FALSE	499	1288	110	792	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	4	17	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	91	111	0.19	0.16	0.0338	0.1437	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.19	0.1775	TRUE	105	90	7	93	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	15	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0.1268	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1606	FALSE	499	1288	110	792	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCARB1--UBC	7	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	139	49	0.05	0.14	0.0592	0.0085	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.14	0.0677	TRUE	55	66	6	101	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0592	FALSE	462	80	0	856	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	6	3	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0.0254	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0761	TRUE	0	1	0	84	1	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRSS57--PALM	6	2	PRSS57	1647	chr19:694814:-	PALM	12642	chr19:726138:+	ONLY_REF_SPLICE	YES	3561	4	0	0.67	0.0507	0.0169	LOCAL_INVERSION:-:+:[13493],PRSS57->chr19:685521-695460:-,protease,_serine_57,PALM->chr19:708953-748329:+,paralemmin	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.67	0.0676	FALSE	0	0	0	2	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	21	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	NO	66	81	0.25	0.21	0.0085	0.1775	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.25	0.186	TRUE	20	16	0	28	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	6	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0507	TRUE	0	0	0	518	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	5	2	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0.0169	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0592	TRUE	0	1	0	84	1	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRTN3--MT-RNR2	5	1	PRTN3	5239	chr19:848005:+	MT-RNR2	8417	chrM:1678:+	INCL_NON_REF_SPLICE	YES	3135	0	0	1	0.0423	0.0085	PRTN3->chr19:840963-848175:+,proteinase_3,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0508	FALSE	0	0	0	1	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	3	7	ABL1	1510	chr9:133589842:+	BCR	48463	chr22:23651611:+	ONLY_REF_SPLICE	YES	0	66	1	0.13	0.0254	0.0592	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.0846	TRUE	0	1	0	5	1	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	3	4	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0.0338	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0592	TRUE	0	1	0	84	1	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--SUMO2	4	0	JSRP1	1202	chr19:2269557:-	SUMO2	10431	chr17:73179054:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	TRUE	0	0	0	2	0	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-RNR2	4	0	MT-CO2	1320	chrM:7905:+	MT-RNR2	5267	chrM:2253:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	FALSE	24	6	1	8	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-RNR2	4	0	MT-CO2	1267	chrM:7852:+	MT-RNR2	5224	chrM:2210:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	FALSE	24	6	1	8	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	FALSE	292	1546	117	613	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--TBCA	4	0	RCC1	2175	chr1:28834672:+	TBCA	22542	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	TRUE	0	3	0	7	0	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-498C9.2--PRTN3	3	1	RP11-498C9.2	1779	chr17:79801819:+	PRTN3	4870	chr19:841038:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.8	0.0254	0.0085	RP11-498C9.2->chr17:79801041-79801834:+,PRTN3->chr19:840963-848175:+,proteinase_3	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSTF3--HIPK3	3	0	CSTF3	2073	chr11:33182845:-	HIPK3	32381	chr11:33350056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_INVERSION:-:+:[94301],CSTF3->chr11:33098734-33183917:-,cleavage_stimulation_factor_subunit_3,HIPK3->chr11:33278218-33378569:+,homeodomain_interacting_protein_kinase_3	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	FALSE	499	1288	110	792	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	FALSE	462	80	0	856	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRFBP1--TNFAIP8	3	0	SRFBP1	3270	chr5:121311082:+	TNFAIP8	22576	chr5:118728511:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0	SRFBP1->chr5:121297656-121411265:+,serum_response_factor_binding_protein_1,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001432.14--TTC3	2	1	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	78	1	0.04	0.0169	0.0085	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0254	TRUE	0	0	0	15	0	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	2	1	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	1	31	0.75	0.09	0.0169	0.0085	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.75	0.0254	FALSE	1	11	0	34	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0169	0.0085	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.0254	FALSE	125	705	46	456	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--IRF2BP2	2	0	CPSF6	11046	chr12:69656342:+	IRF2BP2	21567	chr1:234743598:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	9	0	3	1	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FDPS--NAP1L4	2	0	FDPS	3847	chr1:155282186:+	NAP1L4	17986	chr11:3000467:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,NAP1L4->chr11:2965667-3013607:-,nucleosome_assembly_protein_1_like_4	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MANBA--UBE2D3	2	0	MANBA	1277	chr4:103681875:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	12	9	1	12	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCAPH--MCM8	2	0	NCAPH	10839	chr2:97026448:+	MCM8	21694	chr20:5932657:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	NCAPH->chr2:97001525-97039583:+,non-SMC_condensin_I_complex_subunit_H,MCM8->chr20:5931298-5975852:+,minichromosome_maintenance_8_homologous_recombination_repair_factor	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOR2--UBC	2	0	NCOR2	21671	chr12:124882665:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	30	26	0	16	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	3	KANSL1	7536	chr17:44248221:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	91	81	0.04	0.05	0.0085	0.0254	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.05	0.0339	TRUE	0	0	0	6	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYST--IRF2BP2	1	3	LYST	4827	chr1:235993526:-	IRF2BP2	75209	chr1:234743598:-	ONLY_REF_SPLICE	NO	192	286	0.02	0.01	0.0085	0.0254	GTEx_FI:{Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0339	FALSE	2	0	0	1	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.17	1	0.0085	0.0169	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.0254	FALSE	164	806	69	479	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AKT2--GNAS	1	1	AKT2	1356	chr19:40791088:-	GNAS	47835	chr20:57470667:+	ONLY_REF_SPLICE	NO	306	798	0.01	0	0.0085	0.0085	AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--ITGB3BP	1	1	C17orf76-AS1	1593	chr17:16342728:+	ITGB3BP	24528	chr1:63920639:-	ONLY_REF_SPLICE	NO	133	54	0.01	0.04	0.0085	0.0085	C17orf76-AS1->chr17:16342136-16381992:+,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.017	FALSE	0	0	0	4	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GSTT1--TIMMDC1	1	1	GSTT1	1561	chr22:24384120:-	TIMMDC1	12919	chr3:119219542:+	ONLY_REF_SPLICE	YES	63	171	0.03	0.01	0.0085	0.0085	GSTT1->Oncogene{Bushman},chr22:24376133-24384680:-,glutathione_S-transferase_theta_1,TIMMDC1->chr3:119217379-119243937:+,translocase_of_inner_mitochondrial_membrane_domain_containing_1	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--CHMP1A	1	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	NO	220	97	0.01	0.02	0.0085	0.0085	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.017	FALSE	13	55	3	29	0	FALSE	ACH-000295
EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--TUBGCP6	1	1	PROSC	2996	chr8:37623873:+	TUBGCP6	26031	chr22:50658444:-	ONLY_REF_SPLICE	YES	220	46	0.01	0.04	0.0085	0.0085	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6	EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.017	FALSE	2	2	1	4	0	FALSE	ACH-000295
NCIH647_LUNG	FTL--MT-CO1	864	4	FTL	1296	chr19:49468853:+	MT-CO1	5895	chrM:6220:+	INCL_NON_REF_SPLICE	YES	10699	17707	0.08	0.05	7.6159	0.0353	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH647_LUNG	0.05	0.08	7.6512	FALSE	0	7	0	14	0	FALSE	ACH-000378
NCIH647_LUNG	NRCAM--PNPLA8	215	46	NRCAM	1475	chr7:108096687:-	PNPLA8	53857	chr7:108143086:-	ONLY_REF_SPLICE	YES	126	56	0.67	0.82	1.8952	0.4055	LOCAL_REARRANGEMENT:-:[13705],NRCAM->Oncogene{Bushman},chr7:107788068-108097161:-,neuronal_cell_adhesion_molecule,PNPLA8->chr7:108110866-108210110:-,patatin_like_phospholipase_domain_containing_8	NCIH647_LUNG	0.67	0.82	2.3007	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	TIMM23B--LINC00843	95	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8374	0.141	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH647_LUNG	0.99	1	0.9784	TRUE	508	994	45	981	0	FALSE	ACH-000378
NCIH647_LUNG	TIMM23--RP11-464F9.1	68	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	194	3	0.26	0.96	0.5994	0.0088	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH647_LUNG	0.26	0.96	0.6082	TRUE	519	3926	326	965	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	5	230	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	8	0	0.97	1	0.0441	2.0274	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.97	1	2.0715	FALSE	344	826	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	3	223	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	7	0	0.97	1	0.0264	1.9657	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.97	1	1.9921	FALSE	344	826	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	52	26	PVT1	1202	chr8:128806980:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	124	0	0.39	1	0.4584	0.2292	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.39	1	0.6876	TRUE	0	2	0	3	2	TRUE	ACH-000378
NCIH647_LUNG	MT-TA--MT-TC	53	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4672	0.0617	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH647_LUNG	1	1	0.5289	FALSE	462	80	0	856	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	13	164	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.98	1	0.1146	1.4456	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.98	1	1.5602	FALSE	344	821	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	14	153	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	5017	1	0.03	0.99	0.1234	1.3486	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.03	0.99	1.472	FALSE	344	827	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	3	194	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	4	0	0.98	1	0.0264	1.7101	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.98	1	1.7365	FALSE	344	826	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	KANSL1--ARL17B	44	22	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	21	83	0.76	0.44	0.3878	0.1939	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH647_LUNG	0.44	0.76	0.5817	TRUE	181	1564	124	196	0	FALSE	ACH-000378
NCIH647_LUNG	AP003900.6--AP000345.1	48	0	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4231	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH647_LUNG	1	1	0.4231	TRUE	4	17	0	31	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND6--MT-TE	45	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3967	0.0441	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH647_LUNG	1	1	0.4408	FALSE	499	1288	110	792	0	FALSE	ACH-000378
NCIH647_LUNG	MYO9B--CTD-2291D10.4	43	13	MYO9B	11172	chr19:17273276:+	CTD-2291D10.4	44168	chr19:23258137:+	INCL_NON_REF_SPLICE	YES	124	1	0.31	0.98	0.379	0.1146	MYO9B->chr19:17186591-17325346:+,myosin_IXB,CTD-2291D10.4->chr19:23258003-23283163:+	NCIH647_LUNG	0.31	0.98	0.4936	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	ZNF654--HMGB2	46	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4055	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH647_LUNG	1	1	0.4055	TRUE	0	0	0	518	0	FALSE	ACH-000378
NCIH647_LUNG	PLXDC1--TAF13	43	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.379	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH647_LUNG	1	1	0.379	TRUE	7	10	0	216	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	19	53	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	10870	0	0.01	1	0.1675	0.4672	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.01	1	0.6347	FALSE	328	800	43	304	0	FALSE	ACH-000378
NCIH647_LUNG	HSP90AB1--MT-RNR2	31	4	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3140	0	0.01	1	0.2733	0.0353	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH647_LUNG	0.01	1	0.3086	FALSE	13	9	0	364	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	4	112	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	7	1	0.94	0.99	0.0353	0.9872	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.94	0.99	1.0225	FALSE	344	826	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	9	73	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	2	0.96	0.98	0.0793	0.6435	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	0.96	0.98	0.7228	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	9	73	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	0	34	1	0.71	0.0793	0.6435	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	0.71	1	0.7228	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND6--MT-TE	25	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2204	0.0529	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH647_LUNG	1	1	0.2733	FALSE	499	1288	110	792	0	FALSE	ACH-000378
NCIH647_LUNG	WIPI2--DPY19L1	24	6	WIPI2	3967	chr7:5239289:+	DPY19L1	30946	chr7:35029553:-	ONLY_REF_SPLICE	YES	28	40	0.52	0.43	0.2116	0.0529	WIPI2->WD_repeat_domain,_phosphoinositide_interacting_2,chr7:5229819-5273457:+,DPY19L1->chr7:34968488-35077883:-,dpy-19_like_1_(C._elegans)	NCIH647_LUNG	0.43	0.52	0.2645	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	MYO9B--CTD-2291D10.4	23	9	MYO9B	10055	chr19:17270294:+	CTD-2291D10.4	44168	chr19:23258137:+	INCL_NON_REF_SPLICE	YES	137	1	0.19	0.97	0.2027	0.0793	MYO9B->chr19:17186591-17325346:+,myosin_IXB,CTD-2291D10.4->chr19:23258003-23283163:+	NCIH647_LUNG	0.19	0.97	0.282	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	MT-ND6--MT-TE	19	20	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.1675	0.1763	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH647_LUNG	0.93	1	0.3438	FALSE	499	1288	110	792	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND6--MT-ND5	23	1	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	2722	1	0.01	0.2027	0.0088	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH647_LUNG	0.01	1	0.2115	FALSE	101	855	57	72	0	FALSE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	3	80	MT-CO3	1220	chrM:9426:+	MT-ATP6	5072	chrM:8814:+	INCL_NON_REF_SPLICE	YES	6	21	0.93	0.8	0.0264	0.7052	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	0.8	0.93	0.7316	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	HSP90AB1--MT-RNR2	22	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3165	0	0.01	1	0.1939	0.0264	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH647_LUNG	0.01	1	0.2203	FALSE	13	9	0	364	0	FALSE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	3	79	MT-CO3	1163	chrM:9369:+	MT-ATP6	4966	chrM:8708:+	INCL_NON_REF_SPLICE	YES	6	29	0.93	0.74	0.0264	0.6964	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	0.74	0.93	0.7228	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	3	78	MT-CO3	1393	chrM:9599:+	MT-ATP6	5185	chrM:8927:+	INCL_NON_REF_SPLICE	NO	3	62	0.96	0.57	0.0264	0.6875	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	0.57	0.96	0.7139	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	3	77	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	6	1	0.93	0.99	0.0264	0.6787	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.93	0.99	0.7051	FALSE	344	826	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	UBXN4--R3HDM1	19	12	UBXN4	3847	chr2:136505939:+	R3HDM1	45367	chr2:136432902:+	ONLY_REF_SPLICE	YES	223	48	0.12	0.39	0.1675	0.1058	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:2],LOCAL_REARRANGEMENT:+:[16349],UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+,R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+	NCIH647_LUNG	0.12	0.39	0.2733	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	AP4S1--NUBPL	19	10	AP4S1	1682	chr14:31494993:+	NUBPL	29073	chr14:32142561:+	ONLY_REF_SPLICE	YES	29	19	0.5	0.6	0.1675	0.0881	AP4S1->adaptor_related_protein_complex_4_sigma_1_subunit,chr14:31494312-31562818:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	NCIH647_LUNG	0.5	0.6	0.2556	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	3	74	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	9	2	0.9	0.97	0.0264	0.6523	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	0.9	0.97	0.6787	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	3	67	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	3	1	0.96	0.99	0.0264	0.5906	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.96	0.99	0.617	FALSE	344	821	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	13	27	PVT1	2457	chr8:128808254:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	137	0	0.23	1	0.1146	0.238	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.23	1	0.3526	TRUE	0	2	0	3	2	TRUE	ACH-000378
NCIH647_LUNG	C17orf76-AS1--RP1-66C13.4	16	14	C17orf76-AS1	3309	chr17:16344444:+	RP1-66C13.4	16489	chr17:26131367:-	ONLY_REF_SPLICE	YES	3210	0	0.01	1	0.141	0.1234	C17orf76-AS1->chr17:16342136-16381992:+,RP1-66C13.4->chr17:26125832-26220391:-	NCIH647_LUNG	0.01	1	0.2644	TRUE	0	0	0	1	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	3	66	MT-ND4	1125	chrM:10884:+	MT-ND4L	5651	chrM:10742:+	INCL_NON_REF_SPLICE	YES	8	1	0.9	0.99	0.0264	0.5818	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.9	0.99	0.6082	FALSE	344	826	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	9	37	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	334	0	0.12	1	0.0793	0.3261	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.12	1	0.4054	FALSE	344	827	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	UBXN4--R3HDM1	14	15	UBXN4	5586	chr2:136511847:+	R3HDM1	45367	chr2:136432902:+	ONLY_REF_SPLICE	YES	194	48	0.13	0.38	0.1234	0.1322	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:2],LOCAL_REARRANGEMENT:+:[16349],UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+,R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+	NCIH647_LUNG	0.13	0.38	0.2556	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	ACTN4--MT-CO1	17	0	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1498	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH647_LUNG	1	1	0.1498	FALSE	0	0	0	30	0	FALSE	ACH-000378
NCIH647_LUNG	AP003900.6--AP000345.1	16	0	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.141	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH647_LUNG	1	1	0.141	TRUE	0	8	0	37	1	FALSE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	3	51	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	1	1	0.98	0.98	0.0264	0.4495	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	0.98	0.98	0.4759	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	7	35	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	1	1	0.98	0.98	0.0617	0.3085	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.98	0.98	0.3702	FALSE	344	821	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	6	37	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6917	0	0.01	1	0.0529	0.3261	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.01	1	0.379	FALSE	344	827	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	11	16	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	41	0	0.4	1	0.097	0.141	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.4	1	0.238	FALSE	344	827	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	4	37	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	7	0	0.85	1	0.0353	0.3261	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.85	1	0.3614	FALSE	344	826	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	4	37	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	11	0	0.79	1	0.0353	0.3261	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.79	1	0.3614	FALSE	344	826	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND6--MT-TE	6	28	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0.2468	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH647_LUNG	1	1	0.2997	FALSE	499	1288	110	792	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	3	37	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10	0	0.8	1	0.0264	0.3261	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.8	1	0.3525	FALSE	344	826	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND6--MT-TE	4	33	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.0353	0.2909	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH647_LUNG	0.93	1	0.3262	FALSE	499	1288	110	792	0	FALSE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	3	36	MT-CO3	1033	chrM:9239:+	MT-ATP6	4768	chrM:8510:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0.3173	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	1	1	0.3437	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	MT-TA--MT-TC	10	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0881	0.0705	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH647_LUNG	1	1	0.1586	FALSE	462	80	0	856	0	FALSE	ACH-000378
NCIH647_LUNG	MT-TA--MT-TC	9	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0793	0.0793	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH647_LUNG	1	1	0.1586	FALSE	462	80	0	856	0	FALSE	ACH-000378
NCIH647_LUNG	C17orf76-AS1--RP1-66C13.4	7	16	C17orf76-AS1	3309	chr17:16344444:+	RP1-66C13.4	16486	chr17:26131370:-	INCL_NON_REF_SPLICE	YES	3210	0	0.01	1	0.0617	0.141	C17orf76-AS1->chr17:16342136-16381992:+,RP1-66C13.4->chr17:26125832-26220391:-	NCIH647_LUNG	0.01	1	0.2027	TRUE	0	0	0	1	0	FALSE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	11	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.097	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	1	1	0.097	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	C15orf57--CBX3	9	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	16	26	0.47	0.35	0.0793	0.0441	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH647_LUNG	0.35	0.47	0.1234	TRUE	267	562	48	632	0	FALSE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	3	29	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.94	0.0264	0.2556	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	0.94	1	0.282	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	NRIP1--AF127936.7	10	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0881	0.0088	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH647_LUNG	0.92	1	0.0969	FALSE	292	1546	117	613	0	FALSE	ACH-000378
NCIH647_LUNG	IGFBP4--NPM1	10	0	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0881	0	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	NCIH647_LUNG	1	1	0.0881	TRUE	0	0	0	38	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND5--MT-ATP6	8	8	MT-ND5	2730	chrM:14066:+	MT-ATP6	5767	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4	0	0.8	1	0.0705	0.0705	LOCAL_REARRANGEMENT:+:[3130],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	0.8	1	0.141	FALSE	7	8	0	2	0	FALSE	ACH-000378
NCIH647_LUNG	MT-TA--MT-TC	10	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0881	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH647_LUNG	1	1	0.0881	FALSE	462	80	0	856	0	FALSE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	3	27	PVT1	1202	chr8:128806980:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	124	0	0.19	1	0.0264	0.238	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.19	1	0.2644	TRUE	0	1	0	3	1	TRUE	ACH-000378
NCIH647_LUNG	AP4S1--NUBPL	7	8	AP4S1	1682	chr14:31494993:+	NUBPL	29202	chr14:32142690:+	ONLY_REF_SPLICE	YES	29	20	0.34	0.43	0.0617	0.0705	AP4S1->adaptor_related_protein_complex_4_sigma_1_subunit,chr14:31494312-31562818:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	NCIH647_LUNG	0.34	0.43	0.1322	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	3	24	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.96	0.0264	0.2116	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	0.96	1	0.238	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0793	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH647_LUNG	1	1	0.0793	TRUE	0	0	0	434	0	FALSE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	2	28	PVT1	2520	chr8:128808317:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	146	0	0.17	1	0.0176	0.2468	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.17	1	0.2644	TRUE	0	1	0	3	1	TRUE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	2	27	PVT1	2520	chr8:128808317:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	146	0	0.17	1	0.0176	0.238	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.17	1	0.2556	TRUE	0	2	0	3	2	TRUE	ACH-000378
NCIH647_LUNG	FTL--MT-CO1	8	2	FTL	1134	chr19:49468691:+	MT-CO1	6232	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3805	20970	0	0	0.0705	0.0176	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH647_LUNG	0	0	0.0881	FALSE	0	7	0	14	0	FALSE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	3	20	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.96	0.0264	0.1763	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	0.96	1	0.2027	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	7	4	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.79	1	0.0617	0.0353	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	0.79	1	0.097	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	4	16	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	10	0	0.67	1	0.0353	0.141	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.67	1	0.1763	FALSE	344	826	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	1	28	PVT1	2457	chr8:128808254:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	137	0	0.17	1	0.0088	0.2468	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.17	1	0.2556	TRUE	0	1	0	3	1	TRUE	ACH-000378
NCIH647_LUNG	C17orf76-AS1--RP1-66C13.4	5	11	C17orf76-AS1	2432	chr17:16343567:+	RP1-66C13.4	16489	chr17:26131367:-	ONLY_REF_SPLICE	YES	3338	0	0	1	0.0441	0.097	C17orf76-AS1->chr17:16342136-16381992:+,RP1-66C13.4->chr17:26125832-26220391:-	NCIH647_LUNG	0	1	0.1411	TRUE	0	0	0	1	0	FALSE	ACH-000378
NCIH647_LUNG	FTL--MT-CO1	7	2	FTL	1122	chr19:49468679:+	MT-CO1	6221	chrM:6546:+	INCL_NON_REF_SPLICE	YES	1134	20588	0.01	0	0.0617	0.0176	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH647_LUNG	0	0.01	0.0793	FALSE	0	7	0	14	0	FALSE	ACH-000378
NCIH647_LUNG	RP11-123O10.4--GRIP1	7	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0617	0.0088	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH647_LUNG	1	1	0.0705	FALSE	416	2512	207	587	0	FALSE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	7	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0617	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	1	1	0.0617	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND3--MT-ATP8	7	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0617	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH647_LUNG	1	1	0.0617	FALSE	351	233	23	137	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND3--MT-ATP8	7	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0617	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH647_LUNG	1	1	0.0617	FALSE	351	233	23	137	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	3	16	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	9	0	0.68	1	0.0264	0.141	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.68	1	0.1674	FALSE	344	826	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	3	16	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	14	0	0.58	1	0.0264	0.141	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.58	1	0.1674	FALSE	344	827	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND6--MT-ND5	7	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0617	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH647_LUNG	1	1	0.0617	FALSE	101	855	57	72	0	FALSE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	6	3	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34734	chr8:129435839:-	ONLY_REF_SPLICE	YES	124	7	0.07	0.56	0.0529	0.0264	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.07	0.56	0.0793	TRUE	0	1	0	3	0	TRUE	ACH-000378
NCIH647_LUNG	SPATA5--SEC24D	6	1	SPATA5	8357	chr4:123859404:+	SEC24D	47961	chr4:119674043:-	ONLY_REF_SPLICE	YES	3	38	0.7	0.16	0.0529	0.0088	SPATA5->chr4:123844229-124240605:+,spermatogenesis_associated_5,SEC24D->SEC24_homolog_D,_COPII_coat_complex_component,chr4:119643978-119759838:-	NCIH647_LUNG	0.16	0.7	0.0617	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	4	8	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.0353	0.0705	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	0.8	1	0.1058	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH647_LUNG	1	1	0.0529	FALSE	499	1288	110	792	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH647_LUNG	1	1	0.0529	FALSE	499	1288	110	792	0	FALSE	ACH-000378
NCIH647_LUNG	ASPH--CHMP1A	5	3	ASPH	8053	chr8:62593527:-	CHMP1A	53636	chr16:89713739:-	ONLY_REF_SPLICE	YES	3045	114	0	0.07	0.0441	0.0264	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH647_LUNG	0	0.07	0.0705	FALSE	0	1	0	2	0	FALSE	ACH-000378
NCIH647_LUNG	C15orf57--CBX3	5	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	16	26	0.33	0.24	0.0441	0.0264	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH647_LUNG	0.24	0.33	0.0705	TRUE	267	562	48	632	0	FALSE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	3	11	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	3	1	0.82	0.93	0.0264	0.097	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	0.82	0.93	0.1234	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	3	11	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.88	0.0264	0.097	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	0.88	1	0.1234	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	DPY19L1--WIPI2	5	1	DPY19L1	6290	chr7:35050080:-	WIPI2	36627	chr7:5254166:+	ONLY_REF_SPLICE	YES	46	23	0.12	0.21	0.0441	0.0088	DPY19L1->chr7:34968488-35077883:-,dpy-19_like_1_(C._elegans),WIPI2->WD_repeat_domain,_phosphoinositide_interacting_2,chr7:5229819-5273457:+	NCIH647_LUNG	0.12	0.21	0.0529	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	MSN--MT-RNR2	5	1	MSN	21411	chrX:64961598:+	MT-RNR2	24699	chrM:1765:+	INCL_NON_REF_SPLICE	YES	316	5	0.02	0.55	0.0441	0.0088	MSN->Oncogene{Bushman},chrX:64808257-64961791:+,moesin,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH647_LUNG	0.02	0.55	0.0529	FALSE	0	0	0	1	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND6--MT-ND5	5	1	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	2667	1	0	0.0441	0.0088	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH647_LUNG	0	1	0.0529	FALSE	101	855	57	72	0	FALSE	ACH-000378
NCIH647_LUNG	MT-TA--MT-TC	3	9	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0.0793	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH647_LUNG	1	1	0.1057	FALSE	462	80	0	856	0	FALSE	ACH-000378
NCIH647_LUNG	NRIP1--AF127936.7	5	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.29	1	0.0441	0.0088	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH647_LUNG	0.29	1	0.0529	FALSE	125	705	46	456	0	FALSE	ACH-000378
NCIH647_LUNG	RP11-680G10.1--GSE1	5	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	10	1	0.38	0.0441	0.0088	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH647_LUNG	0.38	1	0.0529	TRUE	465	1949	224	605	0	FALSE	ACH-000378
NCIH647_LUNG	MT-CO3--MT-ATP6	3	8	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	8	0	0.58	1	0.0264	0.0705	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	0.58	1	0.0969	FALSE	189	492	56	216	0	FALSE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	4	3	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34727	chr8:129435846:-	INCL_NON_REF_SPLICE	YES	124	9	0.05	0.44	0.0353	0.0264	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.05	0.44	0.0617	TRUE	0	1	0	3	0	TRUE	ACH-000378
NCIH647_LUNG	FTL--MT-CO1	4	2	FTL	1129	chr19:49468686:+	MT-CO1	6014	chrM:6339:+	INCL_NON_REF_SPLICE	YES	3118	18969	0	0	0.0353	0.0176	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH647_LUNG	0	0	0.0529	FALSE	0	7	0	14	0	FALSE	ACH-000378
NCIH647_LUNG	RP11-680G10.1--GSE1	3	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.53	0.0264	0.0441	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH647_LUNG	0.53	1	0.0705	TRUE	458	1351	185	561	0	FALSE	ACH-000378
NCIH647_LUNG	ENO1--EEF2	4	0	ENO1	11548	chr1:8923321:-	EEF2	24932	chr19:3976731:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	NCIH647_LUNG	1	1	0.0353	TRUE	0	0	0	9	0	TRUE	ACH-000378
NCIH647_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0353	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH647_LUNG	1	1	0.0353	FALSE	499	1288	110	792	0	FALSE	ACH-000378
NCIH647_LUNG	NRCAM--PNPLA8	2	8	NRCAM	1475	chr7:108096687:-	PNPLA8	55009	chr7:108138021:-	ONLY_REF_SPLICE	YES	126	88	0.07	0.1	0.0176	0.0705	LOCAL_REARRANGEMENT:-:[13705],NRCAM->Oncogene{Bushman},chr7:107788068-108097161:-,neuronal_cell_adhesion_molecule,PNPLA8->chr7:108110866-108210110:-,patatin_like_phospholipase_domain_containing_8	NCIH647_LUNG	0.07	0.1	0.0881	TRUE	0	0	0	1	0	FALSE	ACH-000378
NCIH647_LUNG	RP11-120D5.1--MID1	4	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0353	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH647_LUNG	1	1	0.0353	FALSE	16	356	14	466	0	FALSE	ACH-000378
NCIH647_LUNG	WIPI2--DPY19L1	4	0	WIPI2	1306	chr7:5230124:+	DPY19L1	30946	chr7:35029553:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0353	0	WIPI2->WD_repeat_domain,_phosphoinositide_interacting_2,chr7:5229819-5273457:+,DPY19L1->chr7:34968488-35077883:-,dpy-19_like_1_(C._elegans)	NCIH647_LUNG	1	1	0.0353	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	MT-ND5--MT-ATP6	3	3	MT-ND5	2112	chrM:13448:+	MT-ATP6	5758	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4471	0	0	1	0.0264	0.0264	LOCAL_REARRANGEMENT:+:[3130],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	0	1	0.0528	FALSE	7	9	0	2	0	FALSE	ACH-000378
NCIH647_LUNG	PVT1--RP11-89M16.1	3	3	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34720	chr8:129435853:-	INCL_NON_REF_SPLICE	YES	124	9	0.05	0.4	0.0264	0.0264	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH647_LUNG	0.05	0.4	0.0528	TRUE	0	1	0	3	0	TRUE	ACH-000378
NCIH647_LUNG	NRIP1--AF127936.7	3	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.23	1	0.0264	0.0176	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH647_LUNG	0.23	1	0.044	FALSE	164	806	69	479	0	FALSE	ACH-000378
NCIH647_LUNG	RP11-114H23.1--RP11-114H23.2	3	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0.0176	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH647_LUNG	1	1	0.044	FALSE	81	155	12	160	0	FALSE	ACH-000378
NCIH647_LUNG	C17orf76-AS1--KTN1	3	1	C17orf76-AS1	1593	chr17:16342728:+	KTN1	17711	chr14:56078737:+	ONLY_REF_SPLICE	NO	223	33	0.02	0.11	0.0264	0.0088	C17orf76-AS1->chr17:16342136-16381992:+,KTN1->Oncogene{Bushman},chr14:56025790-56168244:+,kinectin_1	NCIH647_LUNG	0.02	0.11	0.0352	TRUE	0	0	0	1	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	3	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	1	1	0.8	0.8	0.0264	0.0088	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	0.8	0.8	0.0352	FALSE	344	821	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND6--MT-ND5	3	1	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1594	1	0	0.0264	0.0088	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH647_LUNG	0	1	0.0352	FALSE	101	855	57	72	0	FALSE	ACH-000378
NCIH647_LUNG	MT-CO1--TAGLN2	3	0	MT-CO1	1607	chrM:6510:+	TAGLN2	10731	chr1:159888436:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,TAGLN2->chr1:159887897-159895522:-,transgelin_2	NCIH647_LUNG	1	1	0.0264	FALSE	0	0	0	3	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH647_LUNG	1	1	0.0264	FALSE	344	821	44	306	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND5--MT-ATP6	3	0	MT-ND5	1627	chrM:12963:+	MT-ATP6	6078	chrM:8792:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0	LOCAL_REARRANGEMENT:+:[3130],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH647_LUNG	1	1	0.0264	FALSE	4	9	0	2	0	FALSE	ACH-000378
NCIH647_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH647_LUNG	1	1	0.0264	FALSE	499	1288	110	792	0	FALSE	ACH-000378
NCIH647_LUNG	NRCAM--PNPLA8	3	0	NRCAM	1475	chr7:108096687:-	PNPLA8	57160	chr7:108131911:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	LOCAL_REARRANGEMENT:-:[13705],NRCAM->Oncogene{Bushman},chr7:107788068-108097161:-,neuronal_cell_adhesion_molecule,PNPLA8->chr7:108110866-108210110:-,patatin_like_phospholipase_domain_containing_8	NCIH647_LUNG	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	AP4S1--NUBPL	2	3	AP4S1	1682	chr14:31494993:+	NUBPL	32589	chr14:32256986:+	ONLY_REF_SPLICE	YES	29	19	0.15	0.21	0.0176	0.0264	AP4S1->adaptor_related_protein_complex_4_sigma_1_subunit,chr14:31494312-31562818:+,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	NCIH647_LUNG	0.15	0.21	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	PODXL--TRBC2	2	3	PODXL	2958	chr7:131241019:-	TRBC2	16755	chr7:142498725:+	ONLY_REF_SPLICE	YES	32	0	0.14	1	0.0176	0.0264	PODXL->chr7:131185021-131242976:-,podocalyxin_like,TRBC2->T_cell_receptor_beta_constant_2,chr7:142498725-142500432:+	NCIH647_LUNG	0.14	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	YWHAE--CRK	2	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1993	107	0	0.04	0.0176	0.0176	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NCIH647_LUNG	0	0.04	0.0352	FALSE	6	50	7	115	0	FALSE	ACH-000378
NCIH647_LUNG	MYO9B--CTD-2291D10.4	2	1	MYO9B	11172	chr19:17273276:+	CTD-2291D10.4	45221	chr19:23277814:+	ONLY_REF_SPLICE	YES	124	10	0.02	0.23	0.0176	0.0088	MYO9B->chr19:17186591-17325346:+,myosin_IXB,CTD-2291D10.4->chr19:23258003-23283163:+	NCIH647_LUNG	0.02	0.23	0.0264	TRUE	0	0	0	1	0	FALSE	ACH-000378
NCIH647_LUNG	TEC--SGCB	2	1	TEC	8518	chr4:48165719:-	SGCB	24661	chr4:52899806:-	ONLY_REF_SPLICE	YES	10	4	0.23	0.43	0.0176	0.0088	TEC->chr4:48137800-48271881:-,tec_protein_tyrosine_kinase,SGCB->chr4:52886872-52904648:-,sarcoglycan_beta	NCIH647_LUNG	0.23	0.43	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	AMBRA1--RPL30	2	0	AMBRA1	17529	chr11:46515158:-	RPL30	32417	chr8:99057627:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	NCIH647_LUNG	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	LRP8--RP11-29G8.3	2	0	LRP8	21889	chr1:53716362:-	RP11-29G8.3	34665	chr13:76195899:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	LRP8->LDL_receptor_related_protein_8,chr1:53711217-53793742:-,RP11-29G8.3->chr13:76123909-76381256:+	NCIH647_LUNG	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	MYO1C--PITPNA	2	0	MYO1C	2213	chr17:1394894:-	PITPNA	30211	chr17:1461853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[24906],MYO1C->chr17:1367392-1396106:-,myosin_IC,PITPNA->chr17:1421012-1466110:-,phosphatidylinositol_transfer_protein_alpha	NCIH647_LUNG	1	1	0.0176	TRUE	1	3	0	2	2	TRUE	ACH-000378
NCIH647_LUNG	RCC1--FAF1	2	0	RCC1	2175	chr1:28834672:+	FAF1	30597	chr1:51061888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	NCIH647_LUNG	1	1	0.0176	TRUE	0	1	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	WIPI2--DPY19L1	1	4	WIPI2	3967	chr7:5239289:+	DPY19L1	33269	chr7:35013217:-	ONLY_REF_SPLICE	YES	28	50	0.15	0.09	0.0088	0.0353	WIPI2->WD_repeat_domain,_phosphoinositide_interacting_2,chr7:5229819-5273457:+,DPY19L1->chr7:34968488-35077883:-,dpy-19_like_1_(C._elegans)	NCIH647_LUNG	0.09	0.15	0.0441	TRUE	0	0	0	1	0	TRUE	ACH-000378
NCIH647_LUNG	KANSL1--ARL17B	1	3	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	NO	26	83	0.13	0.05	0.0088	0.0264	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH647_LUNG	0.05	0.13	0.0352	TRUE	105	90	7	93	0	FALSE	ACH-000378
NCIH647_LUNG	RAB2A--ASPH	1	2	RAB2A	1397	chr8:61429812:+	ASPH	22520	chr8:62596747:-	ONLY_REF_SPLICE	NO	163	2380	0.02	0	0.0088	0.0176	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},{Klijn_CCL:Lung=1},RAB2A->RAB2A,_member_RAS_oncogene_family,chr8:61429416-61536186:+,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	NCIH647_LUNG	0	0.02	0.0264	FALSE	0	0	0	2	0	FALSE	ACH-000378
NCIH647_LUNG	ASPH--EIF4A1	1	1	ASPH	5453	chr8:62596598:-	EIF4A1	51272	chr17:7478437:+	ONLY_REF_SPLICE	YES	3321	3448	0	0	0.0088	0.0088	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	NCIH647_LUNG	0	0	0.0176	FALSE	0	0	0	1	0	FALSE	ACH-000378
NCIH647_LUNG	ROMO1--ERGIC3	1	1	ROMO1	1492	chr20:34287685:+	ERGIC3	6005	chr20:34130072:+	ONLY_REF_SPLICE	YES	1192	755	0	0	0.0088	0.0088	ROMO1->chr20:34287194-34288906:+,reactive_oxygen_species_modulator_1,ERGIC3->ERGIC_and_golgi_3,Oncogene{Bushman},chr20:34129770-34145405:+	NCIH647_LUNG	0	0	0.0176	FALSE	0	0	0	1	0	FALSE	ACH-000378
NCIH647_LUNG	RP11-155G15.2--RP11-1E3.1	1	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0088	0.0088	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH647_LUNG	1	1	0.0176	FALSE	46	201	11	112	0	FALSE	ACH-000378
HS751T_FIBROBLAST	TIMM23B--LINC00843	82	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.9271	0.3505	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS751T_FIBROBLAST	0.98	1	1.2776	TRUE	508	994	45	981	0	FALSE	ACH-000165
HS751T_FIBROBLAST	WI2-1896O14.1--RP11-353N4.1	75	27	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.848	0.3053	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	HS751T_FIBROBLAST	1	1	1.1533	TRUE	361	258	24	38	0	FALSE	ACH-000165
HS751T_FIBROBLAST	OR51S1--TP53I11	78	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8819	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HS751T_FIBROBLAST	1	1	0.8819	TRUE	402	216	10	229	0	FALSE	ACH-000165
HS751T_FIBROBLAST	TIMM23--RP11-464F9.1	45	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5088	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS751T_FIBROBLAST	1	1	0.5088	TRUE	519	3926	326	965	0	FALSE	ACH-000165
HS751T_FIBROBLAST	MT-ND6--MT-TE	29	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3279	0.0113	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS751T_FIBROBLAST	1	1	0.3392	FALSE	499	1288	110	792	0	FALSE	ACH-000165
HS751T_FIBROBLAST	MT-TA--MT-TC	26	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.294	0.0339	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS751T_FIBROBLAST	1	1	0.3279	FALSE	462	80	0	856	0	FALSE	ACH-000165
HS751T_FIBROBLAST	COL5A3--COL1A2	26	1	COL5A3	19838	chr19:10089843:-	COL1A2	58697	chr7:94049935:+	INCL_NON_REF_SPLICE	NO	480	8907	0.05	0	0.294	0.0113	HGNC_GENEFAM,PROTCLUST,COL5A3->chr19:10070237-10121147:-,collagen_type_V_alpha_3,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS751T_FIBROBLAST	0	0.05	0.3053	FALSE	0	0	0	1	0	FALSE	ACH-000165
HS751T_FIBROBLAST	EEF1DP3--FRY	20	11	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	2	4	0.94	0.89	0.2261	0.1244	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS751T_FIBROBLAST	0.89	0.94	0.3505	FALSE	20	24	2	21	0	FALSE	ACH-000165
HS751T_FIBROBLAST	COL5A3--COL1A2	10	1	COL5A3	28515	chr19:10079357:-	COL1A2	47533	chr7:94038637:+	INCL_NON_REF_SPLICE	NO	384	10110	0.03	0	0.1131	0.0113	HGNC_GENEFAM,PROTCLUST,COL5A3->chr19:10070237-10121147:-,collagen_type_V_alpha_3,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS751T_FIBROBLAST	0	0.03	0.1244	FALSE	0	0	0	1	0	FALSE	ACH-000165
HS751T_FIBROBLAST	MT-ND6--MT-TE	7	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0791	0.1357	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS751T_FIBROBLAST	0.95	1	0.2148	FALSE	499	1288	110	792	0	FALSE	ACH-000165
HS751T_FIBROBLAST	PRR16--CTD-2334D19.1	8	4	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	84	0	0.12	1	0.0904	0.0452	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS751T_FIBROBLAST	0.12	1	0.1356	FALSE	56	216	12	147	0	FALSE	ACH-000165
HS751T_FIBROBLAST	RP11-680G10.1--GSE1	8	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0904	0.0452	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS751T_FIBROBLAST	1	1	0.1356	TRUE	458	1351	185	561	0	FALSE	ACH-000165
HS751T_FIBROBLAST	CHSY3--HSPA8P4	8	3	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	37	0	0.23	1	0.0904	0.0339	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	HS751T_FIBROBLAST	0.23	1	0.1243	FALSE	89	26	1	44	0	FALSE	ACH-000165
HS751T_FIBROBLAST	MT-ND6--MT-TE	4	18	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0452	0.2035	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS751T_FIBROBLAST	0.96	1	0.2487	FALSE	499	1288	110	792	0	FALSE	ACH-000165
HS751T_FIBROBLAST	SERPINE1--MT-ND4	8	0	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0904	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HS751T_FIBROBLAST	1	1	0.0904	FALSE	1	0	0	29	0	FALSE	ACH-000165
HS751T_FIBROBLAST	PRR16--CTD-2334D19.1	6	7	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	33	0	0.28	1	0.0678	0.0791	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS751T_FIBROBLAST	0.28	1	0.1469	FALSE	21	45	1	60	0	FALSE	ACH-000165
HS751T_FIBROBLAST	MT-ND6--MT-TE	7	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0791	0.0226	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS751T_FIBROBLAST	1	1	0.1017	FALSE	499	1288	110	792	0	FALSE	ACH-000165
HS751T_FIBROBLAST	RP11-680G10.1--GSE1	6	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	5	1	0.67	0.0678	0.0452	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS751T_FIBROBLAST	0.67	1	0.113	TRUE	465	1949	224	605	0	FALSE	ACH-000165
HS751T_FIBROBLAST	COL5A3--COL1A2	6	1	COL5A3	28521	chr19:10079351:-	COL1A2	52121	chr7:94043225:+	INCL_NON_REF_SPLICE	NO	401	9730	0.02	0	0.0678	0.0113	HGNC_GENEFAM,PROTCLUST,COL5A3->chr19:10070237-10121147:-,collagen_type_V_alpha_3,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS751T_FIBROBLAST	0	0.02	0.0791	FALSE	0	0	0	1	0	FALSE	ACH-000165
HS751T_FIBROBLAST	PRR16--CTD-2334D19.1	4	6	PRR16	8644	chr5:120022405:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	25	0	0.29	1	0.0452	0.0678	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS751T_FIBROBLAST	0.29	1	0.113	FALSE	21	45	1	60	0	FALSE	ACH-000165
HS751T_FIBROBLAST	COL5A3--COL1A2	5	1	COL5A3	21753	chr19:10087928:-	COL1A2	63828	chr7:94055066:+	INCL_NON_REF_SPLICE	NO	444	11765	0.01	0	0.0565	0.0113	HGNC_GENEFAM,PROTCLUST,COL5A3->chr19:10070237-10121147:-,collagen_type_V_alpha_3,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS751T_FIBROBLAST	0	0.01	0.0678	FALSE	0	0	0	1	0	FALSE	ACH-000165
HS751T_FIBROBLAST	IGFBP7--MT-ND4L	5	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS751T_FIBROBLAST	1	1	0.0565	FALSE	1	0	0	30	0	FALSE	ACH-000165
HS751T_FIBROBLAST	MT-ND5--MT-ND6	4	3	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	1	2407	0.88	0	0.0452	0.0339	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HS751T_FIBROBLAST	0	0.88	0.0791	FALSE	26	124	4	93	0	FALSE	ACH-000165
HS751T_FIBROBLAST	MT-TA--MT-TC	4	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0.0339	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS751T_FIBROBLAST	1	1	0.0791	FALSE	462	80	0	856	0	FALSE	ACH-000165
HS751T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0452	0.0113	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS751T_FIBROBLAST	0.83	1	0.0565	FALSE	407	2205	196	549	0	FALSE	ACH-000165
HS751T_FIBROBLAST	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0.0452	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS751T_FIBROBLAST	1	1	0.0791	FALSE	462	80	0	856	0	FALSE	ACH-000165
HS751T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	4	0	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0452	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS751T_FIBROBLAST	1	1	0.0452	FALSE	467	2173	244	435	0	FALSE	ACH-000165
HS751T_FIBROBLAST	RP11-1E3.1--RP11-455B3.1	3	1	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0.0113	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	HS751T_FIBROBLAST	1	1	0.0452	TRUE	13	49	2	38	0	FALSE	ACH-000165
HS751T_FIBROBLAST	CTD-2337A12.1--CAST	3	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS751T_FIBROBLAST	1	1	0.0339	TRUE	347	1186	183	220	0	FALSE	ACH-000165
HS751T_FIBROBLAST	EEF1DP3--FRY	2	2	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	8	4	0.33	0.5	0.0226	0.0226	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS751T_FIBROBLAST	0.33	0.5	0.0452	FALSE	18	26	2	21	0	FALSE	ACH-000165
HS751T_FIBROBLAST	PRKD1--CTD-2251F13.1	2	1	PRKD1	1600	chr14:30660505:-	CTD-2251F13.1	38031	chr14:30449473:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0.0113	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,CTD-2251F13.1->chr14:30421603-30766249:-	HS751T_FIBROBLAST	1	1	0.0339	TRUE	0	1	0	5	1	TRUE	ACH-000165
HS751T_FIBROBLAST	DDAH1--RP11-290M5.2	2	0	DDAH1	3294	chr1:86041515:-	RP11-290M5.2	24699	chr1:86066264:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_INVERSION:-:+:[20881],DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,RP11-290M5.2->chr1:86064814-86066417:+	HS751T_FIBROBLAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000165
HS751T_FIBROBLAST	FAM229B--ARHGAP24	2	0	FAM229B	1122	chr6:112408923:+	ARHGAP24	19956	chr4:86844801:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	FAM229B->chr6:112408802-112423993:+,family_with_sequence_similarity_229_member_B,ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+	HS751T_FIBROBLAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000165
HS751T_FIBROBLAST	NAA60--MYL12A	2	0	NAA60	1084	chr16:3415182:+	MYL12A	27791	chr18:3249359:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NAA60->N(alpha)-acetyltransferase_60,_NatF_catalytic_subunit,chr16:3415099-3536960:+,chr16:3493611-3536963:+,MYL12A->chr18:3247479-3256234:+,myosin_light_chain_12A	HS751T_FIBROBLAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000165
HS751T_FIBROBLAST	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HS751T_FIBROBLAST	1	1	0.0226	FALSE	416	2512	207	587	0	FALSE	ACH-000165
HS751T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS751T_FIBROBLAST	1	1	0.0226	FALSE	515	4851	409	746	0	FALSE	ACH-000165
HS751T_FIBROBLAST	UBL3--KATNAL1	2	0	UBL3	2173	chr13:30423649:-	KATNAL1	16973	chr13:30815223:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3,KATNAL1->chr13:30776767-30881621:-,katanin_catalytic_subunit_A1_like_1	HS751T_FIBROBLAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000165
HS751T_FIBROBLAST	COL5A3--COL1A2	1	1	COL5A3	29170	chr19:10078702:-	COL1A2	61031	chr7:94052269:+	ONLY_REF_SPLICE	NO	639	12755	0	0	0.0113	0.0113	HGNC_GENEFAM,PROTCLUST,COL5A3->chr19:10070237-10121147:-,collagen_type_V_alpha_3,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS751T_FIBROBLAST	0	0	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000165
HS751T_FIBROBLAST	HMG20B--RPL4	1	1	HMG20B	3884	chr19:3575658:+	RPL4	17777	chr15:66792486:-	ONLY_REF_SPLICE	YES	205	2327	0.01	0	0.0113	0.0113	HMG20B->chr19:3572775-3579086:+,high_mobility_group_20B,RPL4->chr15:66790355-66816870:-,ribosomal_protein_L4	HS751T_FIBROBLAST	0	0.01	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000165
HS751T_FIBROBLAST	TRPC1--FAM129A	1	1	TRPC1	1658	chr3:142443573:+	FAM129A	28959	chr1:184801096:-	ONLY_REF_SPLICE	YES	11	117	0.15	0.02	0.0113	0.0113	TRPC1->chr3:142442916-142526730:+,transient_receptor_potential_cation_channel_subfamily_C_member_1,FAM129A->chr1:184759858-184943682:-,family_with_sequence_similarity_129_member_A	HS751T_FIBROBLAST	0.02	0.15	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000165
WM793_SKIN	MAD1L1--SNX8	47	13	MAD1L1	3153	chr7:2269619:-	SNX8	53489	chr7:2309274:-	ONLY_REF_SPLICE	YES	53	100	0.53	0.38	0.5181	0.1433	LOCAL_REARRANGEMENT:-:[18527],MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,SNX8->chr7:2291405-2393953:-,sorting_nexin_8	WM793_SKIN	0.38	0.53	0.6614	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	TIMM23B--LINC00843	40	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4409	0.1653	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	WM793_SKIN	1	1	0.6062	TRUE	508	994	45	981	0	FALSE	ACH-000827
WM793_SKIN	AP003900.6--AP000345.1	33	0	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3637	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	WM793_SKIN	1	1	0.3637	TRUE	4	17	0	31	0	FALSE	ACH-000827
WM793_SKIN	TIMM23--RP11-464F9.1	24	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	96	1	0.22	0.96	0.2645	0.0331	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	WM793_SKIN	0.22	0.96	0.2976	TRUE	519	3926	326	965	0	FALSE	ACH-000827
WM793_SKIN	AP003900.6--AP000345.1	15	2	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	3	0	0.85	1	0.1653	0.022	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	WM793_SKIN	0.85	1	0.1873	TRUE	0	8	0	37	1	FALSE	ACH-000827
WM793_SKIN	ACAP2--XXYLT1	10	13	ACAP2	7732	chr3:195101738:-	XXYLT1	60126	chr3:194790840:-	ONLY_REF_SPLICE	YES	13	14	0.64	0.62	0.1102	0.1433	NEIGHBORS[3569],ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-,XXYLT1->Oncogene{Bushman},chr3:194789008-194991896:-,xyloside_xylosyltransferase_1	WM793_SKIN	0.62	0.64	0.2535	FALSE	0	2	0	2	0	FALSE	ACH-000827
WM793_SKIN	MT-TA--MT-TC	10	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1102	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	WM793_SKIN	1	1	0.1102	FALSE	462	80	0	856	0	FALSE	ACH-000827
WM793_SKIN	RP11-444D3.1--SOX5	9	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0992	0.022	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	WM793_SKIN	0.92	1	0.1212	TRUE	477	1352	189	275	0	FALSE	ACH-000827
WM793_SKIN	AKT3--CEP170	8	3	AKT3	3500	chr1:244006427:-	CEP170	53263	chr1:243333056:-	ONLY_REF_SPLICE	YES	5	29	0.69	0.28	0.0882	0.0331	{Klijn_CCL:Head-Neck=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	WM793_SKIN	0.28	0.69	0.1213	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	MT-ND6--MT-TE	7	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0772	0.0331	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	WM793_SKIN	0.91	1	0.1103	FALSE	499	1288	110	792	0	FALSE	ACH-000827
WM793_SKIN	RP11-634B7.4--TRIM58	7	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	26	1	0.24	0.0772	0.011	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	WM793_SKIN	0.24	1	0.0882	TRUE	158	633	76	73	0	FALSE	ACH-000827
WM793_SKIN	COL8A1--CMSS1	5	5	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	184	85	0.05	0.11	0.0551	0.0551	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	WM793_SKIN	0.05	0.11	0.1102	FALSE	76	19	3	26	0	FALSE	ACH-000827
WM793_SKIN	NUTM2A-AS1--MINPP1	4	6	NUTM2A-AS1	16801	chr10:89005872:-	MINPP1	27523	chr10:89268093:+	ONLY_REF_SPLICE	YES	5	19	0.67	0.34	0.0441	0.0661	GTEx_FI:{Skin=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	WM793_SKIN	0.34	0.67	0.1102	TRUE	1	1	0	6	0	FALSE	ACH-000827
WM793_SKIN	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0551	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	WM793_SKIN	1	1	0.0551	FALSE	292	1546	117	613	0	FALSE	ACH-000827
WM793_SKIN	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	3	1	0.67	0.0441	0.022	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	WM793_SKIN	0.67	1	0.0661	TRUE	465	1949	224	605	0	FALSE	ACH-000827
WM793_SKIN	MT-ATP6--MT-CO1	4	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	3422	7236	0	0	0.0441	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	WM793_SKIN	0	0	0.0551	FALSE	183	104	9	328	0	FALSE	ACH-000827
WM793_SKIN	NRIP1--AF127936.7	4	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.45	1	0.0441	0.011	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	WM793_SKIN	0.45	1	0.0551	FALSE	164	806	69	479	0	FALSE	ACH-000827
WM793_SKIN	NUTM2A-AS1--MINPP1	3	5	NUTM2A-AS1	14159	chr10:89048199:-	MINPP1	27523	chr10:89268093:+	ONLY_REF_SPLICE	YES	9	19	0.47	0.3	0.0331	0.0551	GTEx_FI:{Skin=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	WM793_SKIN	0.3	0.47	0.0882	TRUE	3	1	0	6	0	FALSE	ACH-000827
WM793_SKIN	CTD-2337A12.1--CAST	4	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0441	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	WM793_SKIN	1	1	0.0441	TRUE	347	1186	183	220	0	FALSE	ACH-000827
WM793_SKIN	MT-ND6--MT-TE	4	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	WM793_SKIN	1	1	0.0441	FALSE	499	1288	110	792	0	FALSE	ACH-000827
WM793_SKIN	AKT3--CEP170	3	3	AKT3	3500	chr1:244006427:-	CEP170	55034	chr1:243329418:-	ONLY_REF_SPLICE	YES	5	35	0.55	0.15	0.0331	0.0331	{Klijn_CCL:Head-Neck=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	WM793_SKIN	0.15	0.55	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	MAD1L1--SNX8	2	6	MAD1L1	3153	chr7:2269619:-	SNX8	54570	chr7:2304093:-	ONLY_REF_SPLICE	YES	53	113	0.13	0.07	0.022	0.0661	LOCAL_REARRANGEMENT:-:[18527],MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,SNX8->chr7:2291405-2393953:-,sorting_nexin_8	WM793_SKIN	0.07	0.13	0.0881	TRUE	0	0	0	1	0	FALSE	ACH-000827
WM793_SKIN	MT-ATP6--MT-CO1	3	1	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	3808	6053	0	0	0.0331	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	WM793_SKIN	0	0	0.0441	FALSE	183	104	9	328	0	FALSE	ACH-000827
WM793_SKIN	SLC39A11--LINC00511	3	1	SLC39A11	8636	chr17:71027695:-	LINC00511	39209	chr17:70427365:-	ONLY_REF_SPLICE	YES	12	17	0.25	0.19	0.0331	0.011	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	WM793_SKIN	0.19	0.25	0.0441	FALSE	0	1	0	2	0	FALSE	ACH-000827
WM793_SKIN	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	WM793_SKIN	1	1	0.0331	FALSE	462	80	0	856	0	FALSE	ACH-000827
WM793_SKIN	XXbac-BPG252P9.9--SERPINE1	3	0	XXbac-BPG252P9.9	1463	chr6:30691192:-	SERPINE1	13741	chr7:100781885:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	XXbac-BPG252P9.9->chr6:30690882-30691654:-,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	WM793_SKIN	1	1	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	CCDC150--KCNMB2	2	2	CCDC150	2389	chr2:197511228:+	KCNMB2	40923	chr3:178525131:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.022	0.022	CCDC150->chr2:197504278-197628214:+,coiled-coil_domain_containing_150,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	WM793_SKIN	0.8	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	AC104389.28--HBE1	2	1	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.022	0.011	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	WM793_SKIN	0.75	1	0.033	TRUE	0	48	0	65	48	FALSE	ACH-000827
WM793_SKIN	CTD-2023N9.1--CTD-2023N9.2	2	1	CTD-2023N9.1	3408	chr5:56792744:+	CTD-2023N9.2	11053	chr5:56910004:+	ONLY_REF_SPLICE	YES	7	1	0.3	0.75	0.022	0.011	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	WM793_SKIN	0.3	0.75	0.033	FALSE	0	0	0	7	0	FALSE	ACH-000827
WM793_SKIN	AC104389.28--HBE1	2	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	WM793_SKIN	1	1	0.022	TRUE	0	16	0	53	13	FALSE	ACH-000827
WM793_SKIN	ADAMTS6--NDUFS4	2	0	ADAMTS6	2954	chr5:64769404:-	NDUFS4	43407	chr5:52954381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	ADAMTS6->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_6,chr5:64444563-64777747:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	AP1S1--INTS8	2	0	AP1S1	2435	chr7:100800053:+	INTS8	37071	chr8:95888449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	AP1S1->adaptor_related_protein_complex_1_sigma_1_subunit,chr7:100797678-100804877:+,INTS8->chr8:95825539-95893974:+,integrator_complex_subunit_8	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	CCDC148--PKP4	2	0	CCDC148	1339	chr2:159312927:-	PKP4	44290	chr2:159522925:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:-:+:[211],CCDC148->chr2:159027593-159313265:-,coiled-coil_domain_containing_148,PKP4->chr2:159313476-159539391:+,plakophilin_4	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	CCDC150--ZNF451	2	0	CCDC150	31923	chr2:197627207:+	ZNF451	67242	chr6:57025882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	CCDC150->chr2:197504278-197628214:+,coiled-coil_domain_containing_150,ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	CRBN--PDE1C	2	0	CRBN	1090	chr3:3221305:-	PDE1C	40888	chr7:31855768:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	CRBN->cereblon,chr3:3190676-3221394:-,PDE1C->chr7:31790793-32338941:-,phosphodiesterase_1C	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	GRB10--PCMTD2	2	0	GRB10	20015	chr7:50771518:-	PCMTD2	48012	chr20:62895782:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10,PCMTD2->chr20:62887094-62926855:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_2	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	LINS--FAM115A	2	0	LINS	2110	chr15:101142326:-	FAM115A	26126	chr7:143573715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	LINS->chr15:101099574-101143435:-,FAM115A->chr7:143548468-143599291:-	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	MAD1L1--SNX8	2	0	MAD1L1	1372	chr7:2272507:-	SNX8	54570	chr7:2304093:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	LOCAL_REARRANGEMENT:-:[18527],MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,SNX8->chr7:2291405-2393953:-,sorting_nexin_8	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	NUPL2--SPTY2D1	2	0	NUPL2	3987	chr7:23226765:+	SPTY2D1	19552	chr11:18634035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,SPTY2D1->SPT2_chromatin_protein_domain_containing_1,chr11:18627948-18656338:-	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	PRSS27--ADA	2	0	PRSS27	1437	chr16:2770116:-	ADA	13204	chr20:43264929:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PRSS27->chr16:2762419-2770552:-,protease,_serine_27,ADA->adenosine_deaminase,chr20:43248163-43280874:-	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	RANBP2--TTL	2	0	RANBP2	1198	chr2:109336134:+	TTL	46484	chr2:113286258:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RANBP2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RAN_binding_protein_2,chr2:109335937-109402267:+,TTL->Oncogene{Bushman},chr2:113239731-113299316:+,tubulin_tyrosine_ligase	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	RIN2--OLA1	2	0	RIN2	11845	chr20:19956431:+	OLA1	27624	chr2:175006728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RIN2->Ras_and_Rab_interactor_2,chr20:19867165-19983101:+,OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	SCFD2--AP3B1	2	0	SCFD2	5445	chr4:54139993:-	AP3B1	42712	chr5:77335098:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	SNAP25--CSNK2A1	2	0	SNAP25	1148	chr20:10199625:+	CSNK2A1	19293	chr20:489304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	SNAP25->chr20:10199478-10288066:+,synaptosome_associated_protein_25kDa,CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	YWHAE--TBCD	2	0	YWHAE	1332	chr17:1303341:-	TBCD	25437	chr17:80765484:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	ZNF680--RSBN1L	2	0	ZNF680	3637	chr7:64004684:-	RSBN1L	23372	chr7:77407655:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},ZNF680->chr7:63980262-64023484:-,zinc_finger_protein_680,RSBN1L->chr7:77325760-77412339:+,round_spermatid_basic_protein_1_like	WM793_SKIN	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	COL8A1--CMSS1	1	3	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	215	85	0.02	0.04	0.011	0.0331	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	WM793_SKIN	0.02	0.04	0.0441	FALSE	38	10	2	29	0	FALSE	ACH-000827
WM793_SKIN	RP11-680G10.1--GSE1	1	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	1	1	0.8	0.011	0.0331	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	WM793_SKIN	0.8	1	0.0441	TRUE	458	1351	185	561	0	FALSE	ACH-000827
WM793_SKIN	CCDC150--KCNMB2	1	1	CCDC150	1225	chr2:197504502:+	KCNMB2	39798	chr3:178512930:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.011	0.011	CCDC150->chr2:197504278-197628214:+,coiled-coil_domain_containing_150,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	WM793_SKIN	0.67	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	CCDC150--KCNMB2	1	1	CCDC150	1225	chr2:197504502:+	KCNMB2	40923	chr3:178525131:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.011	0.011	CCDC150->chr2:197504278-197628214:+,coiled-coil_domain_containing_150,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	WM793_SKIN	0.67	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000827
WM793_SKIN	CTD-2023N9.1--CTD-2023N9.2	1	1	CTD-2023N9.1	1119	chr5:56691005:+	CTD-2023N9.2	11053	chr5:56910004:+	ONLY_REF_SPLICE	YES	10	1	0.17	0.67	0.011	0.011	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	WM793_SKIN	0.17	0.67	0.022	FALSE	0	0	0	9	0	FALSE	ACH-000827
WM793_SKIN	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	6	129	0.25	0.02	0.011	0.011	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	WM793_SKIN	0.02	0.25	0.022	FALSE	0	59	0	125	0	FALSE	ACH-000827
WM793_SKIN	SLC39A11--LINC00511	1	1	SLC39A11	8636	chr17:71027695:-	LINC00511	40306	chr17:70424439:-	ONLY_REF_SPLICE	YES	12	12	0.14	0.14	0.011	0.011	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	WM793_SKIN	0.14	0.14	0.022	FALSE	0	1	0	3	0	FALSE	ACH-000827
A2058_SKIN	TIMM23B--LINC00843	130	45	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.3121	0.4542	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	A2058_SKIN	0.99	1	1.7663	TRUE	508	994	45	981	0	FALSE	ACH-000788
A2058_SKIN	AP3D1--JSRP1	103	49	AP3D1	10657	chr19:2127151:-	JSRP1	36567	chr19:2252486:-	INCL_NON_REF_SPLICE	YES	156	1	0.49	0.99	1.0396	0.4946	LOCAL_REARRANGEMENT:-:[87787],AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1	A2058_SKIN	0.49	0.99	1.5342	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	TIMM23--RP11-464F9.1	71	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	382	7	0.16	0.91	0.7166	0.0303	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	A2058_SKIN	0.16	0.91	0.7469	TRUE	519	3926	326	965	0	FALSE	ACH-000788
A2058_SKIN	NFIX--DNASE2	41	24	NFIX	18574	chr19:13209401:+	DNASE2	21819	chr19:12992247:-	INCL_NON_REF_SPLICE	YES	5	0	0.93	1	0.4138	0.2422	NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,DNASE2->chr19:12986025-12992282:-,deoxyribonuclease_II,_lysosomal	A2058_SKIN	0.93	1	0.656	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	GIPC1--DNAJB1	29	16	GIPC1	9597	chr19:14589035:-	DNAJB1	16293	chr19:14629090:-	INCL_NON_REF_SPLICE	YES	364	234	0.11	0.16	0.2927	0.1615	LOCAL_REARRANGEMENT:-:[18638],GIPC1->GIPC_PDZ_domain_containing_family_member_1,chr19:14588572-14606944:-,DNAJB1->DnaJ_heat_shock_protein_family_(Hsp40)_member_B1,chr19:14625582-14640582:-	A2058_SKIN	0.11	0.16	0.4542	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	MT-TA--MT-TC	26	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2624	0.0101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A2058_SKIN	1	1	0.2725	FALSE	462	80	0	856	0	FALSE	ACH-000788
A2058_SKIN	NEK8--SUPT6H	22	0	NEK8	2188	chr17:27055878:+	SUPT6H	24093	chr17:27008274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.222	0	LOCAL_REARRANGEMENT:+:[23218],NEK8->NIMA_related_kinase_8,chr17:27052915-27070473:+,SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+	A2058_SKIN	1	1	0.222	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	RP11-141M1.3--STARD13	15	14	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	5	28	0.85	0.51	0.1514	0.1413	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	A2058_SKIN	0.51	0.85	0.2927	FALSE	49	120	16	70	0	FALSE	ACH-000788
A2058_SKIN	AP3D1--JSRP1	7	44	AP3D1	10656	chr19:2127152:-	JSRP1	36573	chr19:2252480:-	INCL_NON_REF_SPLICE	YES	155	1	0.25	0.98	0.0707	0.4441	LOCAL_REARRANGEMENT:-:[87787],AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1	A2058_SKIN	0.25	0.98	0.5148	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	CTD-2023N9.1--CTD-2023N9.2	14	6	CTD-2023N9.1	1119	chr5:56691005:+	CTD-2023N9.2	11053	chr5:56910004:+	ONLY_REF_SPLICE	YES	28	4	0.42	0.83	0.1413	0.0606	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	A2058_SKIN	0.42	0.83	0.2019	FALSE	0	0	0	9	0	FALSE	ACH-000788
A2058_SKIN	RP11-141M1.3--STARD13	12	12	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	4	28	0.86	0.46	0.1211	0.1211	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	A2058_SKIN	0.46	0.86	0.2422	FALSE	141	264	50	91	0	FALSE	ACH-000788
A2058_SKIN	ZNF654--HMGB2	15	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1514	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	A2058_SKIN	1	1	0.1514	TRUE	0	0	0	518	0	FALSE	ACH-000788
A2058_SKIN	DEPDC1B--ELOVL7	14	3	DEPDC1B	4088	chr5:59982789:-	ELOVL7	24022	chr5:60083258:-	ONLY_REF_SPLICE	YES	84	3	0.17	0.85	0.1413	0.0303	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[51601],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,ELOVL7->ELOVL_fatty_acid_elongase_7,chr5:60047618-60140216:-	A2058_SKIN	0.17	0.85	0.1716	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	HSPBP1--ZSWIM6	13	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1312	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	A2058_SKIN	1	1	0.1312	TRUE	47	32	1	28	0	FALSE	ACH-000788
A2058_SKIN	MT-ND4--MT-ATP8	11	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	8817	1	0	0.92	0.111	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2058_SKIN	0	0.92	0.1211	FALSE	230	193	14	283	0	FALSE	ACH-000788
A2058_SKIN	NEK8--SUPT6H	11	0	NEK8	1076	chr17:27052990:+	SUPT6H	24093	chr17:27008274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.111	0	LOCAL_REARRANGEMENT:+:[23218],NEK8->NIMA_related_kinase_8,chr17:27052915-27070473:+,SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+	A2058_SKIN	1	1	0.111	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	C15orf57--CBX3	9	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	45	58	0.26	0.22	0.0908	0.0707	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A2058_SKIN	0.22	0.26	0.1615	TRUE	267	562	48	632	0	FALSE	ACH-000788
A2058_SKIN	MT-ND6--MT-TE	10	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1009	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A2058_SKIN	1	1	0.1009	FALSE	499	1288	110	792	0	FALSE	ACH-000788
A2058_SKIN	MT-ND6--MT-TE	10	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1009	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A2058_SKIN	1	1	0.1009	FALSE	499	1288	110	792	0	FALSE	ACH-000788
A2058_SKIN	RP11-680G10.1--GSE1	9	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	15	1	0.46	0.0908	0.0404	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A2058_SKIN	0.46	1	0.1312	TRUE	465	1949	224	605	0	FALSE	ACH-000788
A2058_SKIN	MT-ND6--MT-TE	8	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0807	0.0707	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A2058_SKIN	1	1	0.1514	FALSE	499	1288	110	792	0	FALSE	ACH-000788
A2058_SKIN	GNG7--PALM	9	1	GNG7	3333	chr19:2646222:-	PALM	18745	chr19:726138:+	ONLY_REF_SPLICE	YES	4	0	0.71	1	0.0908	0.0101	GNG7->G_protein_subunit_gamma_7,chr19:2511217-2702707:-,PALM->chr19:708953-748329:+,paralemmin	A2058_SKIN	0.71	1	0.1009	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	RP11-680G10.1--GSE1	8	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.87	0.0807	0.0505	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A2058_SKIN	0.87	1	0.1312	TRUE	458	1351	185	561	0	FALSE	ACH-000788
A2058_SKIN	MT-CO3--MT-ATP6	5	15	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	8	8	0.71	0.71	0.0505	0.1514	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A2058_SKIN	0.71	0.71	0.2019	FALSE	189	492	56	216	0	FALSE	ACH-000788
A2058_SKIN	AC010987.6--AC010987.5	8	1	AC010987.6	1074	chr2:68052621:-	AC010987.5	6726	chr2:67911209:-	ONLY_REF_SPLICE	YES	8	0	0.53	1	0.0807	0.0101	AC010987.6->chr2:68023186-68052694:-,AC010987.5->chr2:67792736-67911209:-	A2058_SKIN	0.53	1	0.0908	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	MT-ND4--MT-ATP8	8	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8801	2	0	0.82	0.0807	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2058_SKIN	0	0.82	0.0908	FALSE	230	198	14	283	0	FALSE	ACH-000788
A2058_SKIN	SEMA3A--MAGI2	8	1	SEMA3A	11043	chr7:83739786:-	MAGI2	45224	chr7:77998530:-	ONLY_REF_SPLICE	YES	19	0	0.32	1	0.0807	0.0101	SEMA3A->chr7:83585093-84122040:-,semaphorin_3A,MAGI2->ArcherDX_panel,FoundationOne_panel,chr7:77646393-79082890:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_2	A2058_SKIN	0.32	1	0.0908	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	NFIX--DNASE2	7	4	NFIX	15716	chr19:13206543:+	DNASE2	22100	chr19:12991966:-	INCL_NON_REF_SPLICE	YES	20	186	0.35	0.06	0.0707	0.0404	NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,DNASE2->chr19:12986025-12992282:-,deoxyribonuclease_II,_lysosomal	A2058_SKIN	0.06	0.35	0.1111	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	C15orf57--CBX3	6	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	43	59	0.22	0.17	0.0606	0.0606	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A2058_SKIN	0.17	0.22	0.1212	TRUE	267	562	48	632	0	FALSE	ACH-000788
A2058_SKIN	MAGI2--SEMA3A	7	2	MAGI2	20055	chr7:77824191:-	SEMA3A	52661	chr7:83689874:-	ONLY_REF_SPLICE	YES	0	17	1	0.35	0.0707	0.0202	MAGI2->ArcherDX_panel,FoundationOne_panel,chr7:77646393-79082890:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_2,SEMA3A->chr7:83585093-84122040:-,semaphorin_3A	A2058_SKIN	0.35	1	0.0909	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	MT-ND4--MT-ATP8	6	4	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	10601	0	0	1	0.0606	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2058_SKIN	0	1	0.101	FALSE	231	217	16	283	0	FALSE	ACH-000788
A2058_SKIN	CTD-2023N9.1--CTD-2023N9.2	3	15	CTD-2023N9.1	3408	chr5:56792744:+	CTD-2023N9.2	7902	chr5:56869858:+	INCL_NON_REF_SPLICE	YES	31	0	0.37	1	0.0303	0.1514	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	A2058_SKIN	0.37	1	0.1817	FALSE	0	0	0	2	0	FALSE	ACH-000788
A2058_SKIN	MT-CO3--MT-ATP6	3	15	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	12	8	0.6	0.69	0.0303	0.1514	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A2058_SKIN	0.6	0.69	0.1817	FALSE	189	492	56	216	0	FALSE	ACH-000788
A2058_SKIN	MT-CO3--MT-ATP6	6	2	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	11	1	0.42	0.89	0.0606	0.0202	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A2058_SKIN	0.42	0.89	0.0808	FALSE	189	492	56	216	0	FALSE	ACH-000788
A2058_SKIN	MT-ND6--MT-TE	4	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0404	0.0908	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A2058_SKIN	0.93	1	0.1312	FALSE	499	1288	110	792	0	FALSE	ACH-000788
A2058_SKIN	RP11-123O10.4--GRIP1	6	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0606	0.0101	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	A2058_SKIN	1	1	0.0707	FALSE	416	2512	207	587	0	FALSE	ACH-000788
A2058_SKIN	CTD-2023N9.1--CTD-2023N9.2	4	8	CTD-2023N9.1	1119	chr5:56691005:+	CTD-2023N9.2	7902	chr5:56869858:+	INCL_NON_REF_SPLICE	YES	28	0	0.3	1	0.0404	0.0807	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	A2058_SKIN	0.3	1	0.1211	FALSE	0	0	0	6	0	FALSE	ACH-000788
A2058_SKIN	MT-TA--MT-TC	5	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0.0101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A2058_SKIN	1	1	0.0606	FALSE	462	80	0	856	0	FALSE	ACH-000788
A2058_SKIN	MT-ND4--MT-ATP8	3	8	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1895	66	0.01	0.14	0.0303	0.0807	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2058_SKIN	0.01	0.14	0.111	FALSE	216	209	16	281	0	FALSE	ACH-000788
A2058_SKIN	NRIP1--AF127936.7	4	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.27	1	0.0404	0.0404	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A2058_SKIN	0.27	1	0.0808	FALSE	164	806	69	479	0	FALSE	ACH-000788
A2058_SKIN	MT-ND4--MT-ATP8	4	2	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	12089	0	0	1	0.0404	0.0202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2058_SKIN	0	1	0.0606	FALSE	231	217	16	283	0	FALSE	ACH-000788
A2058_SKIN	MT-ND4--MT-ATP8	4	2	MT-ND4	1552	chrM:11311:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	12578	968	0	0.01	0.0404	0.0202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2058_SKIN	0	0.01	0.0606	FALSE	231	217	16	283	0	FALSE	ACH-000788
A2058_SKIN	NRIP1--AF127936.7	4	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0404	0.0202	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A2058_SKIN	0.67	1	0.0606	FALSE	292	1546	117	613	0	FALSE	ACH-000788
A2058_SKIN	CTD-2023N9.1--CTD-2023N9.2	1	13	CTD-2023N9.1	3408	chr5:56792744:+	CTD-2023N9.2	11053	chr5:56910004:+	ONLY_REF_SPLICE	YES	31	4	0.31	0.78	0.0101	0.1312	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	A2058_SKIN	0.31	0.78	0.1413	FALSE	0	0	0	7	0	FALSE	ACH-000788
A2058_SKIN	MT-ND4--MT-ATP8	4	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10467	2	0	0.71	0.0404	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2058_SKIN	0	0.71	0.0505	FALSE	231	205	14	283	0	FALSE	ACH-000788
A2058_SKIN	MT-ND4--MT-ATP8	4	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	11572	66	0	0.07	0.0404	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2058_SKIN	0	0.07	0.0505	FALSE	231	205	14	283	0	FALSE	ACH-000788
A2058_SKIN	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	43	0.71	0.1	0.0404	0.0101	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	A2058_SKIN	0.1	0.71	0.0505	FALSE	16	356	14	466	0	FALSE	ACH-000788
A2058_SKIN	ACTN4--MT-CO1	4	0	ACTN4	15652	chr19:39214946:+	MT-CO1	26380	chrM:6565:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A2058_SKIN	1	1	0.0404	FALSE	0	0	0	30	0	FALSE	ACH-000788
A2058_SKIN	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A2058_SKIN	1	1	0.0404	FALSE	462	80	0	856	0	FALSE	ACH-000788
A2058_SKIN	RP11-444D3.1--SOX5	3	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	5	1	0.58	0.0303	0.0404	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	A2058_SKIN	0.58	1	0.0707	TRUE	477	1352	189	275	0	FALSE	ACH-000788
A2058_SKIN	RP11-96H19.1--RP11-446N19.1	4	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A2058_SKIN	1	1	0.0404	FALSE	515	4851	409	746	0	FALSE	ACH-000788
A2058_SKIN	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.22	1	0.0303	0.0202	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A2058_SKIN	0.22	1	0.0505	FALSE	125	705	46	456	0	FALSE	ACH-000788
A2058_SKIN	MT-CO3--MT-ATP6	3	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	9	0	0.31	1	0.0303	0.0101	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A2058_SKIN	0.31	1	0.0404	FALSE	189	492	56	216	0	FALSE	ACH-000788
A2058_SKIN	MT-ND4--MT-ATP8	3	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	11572	0	0	1	0.0303	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2058_SKIN	0	1	0.0404	FALSE	231	205	14	283	0	FALSE	ACH-000788
A2058_SKIN	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A2058_SKIN	1	1	0.0303	FALSE	189	492	56	216	0	FALSE	ACH-000788
A2058_SKIN	WTAPP1--RUVBL1	3	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0303	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	A2058_SKIN	1	1	0.0303	TRUE	9	252	6	66	0	FALSE	ACH-000788
A2058_SKIN	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0.0303	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A2058_SKIN	1	1	0.0505	FALSE	467	2173	244	435	0	FALSE	ACH-000788
A2058_SKIN	TTYH2--GPRC5C	2	3	TTYH2	4585	chr17:72227138:+	GPRC5C	26059	chr17:72435884:+	ONLY_REF_SPLICE	YES	20	0	0.2	1	0.0202	0.0303	TTYH2->chr17:72209653-72258155:+,tweety_family_member_2,GPRC5C->G_protein-coupled_receptor_class_C_group_5_member_C,chr17:72420990-72447792:+	A2058_SKIN	0.2	1	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0202	0.0101	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A2058_SKIN	0.75	1	0.0303	FALSE	407	2205	196	549	0	FALSE	ACH-000788
A2058_SKIN	AC009948.5--NFE2L2	2	0	AC009948.5	1175	chr2:179278840:+	NFE2L2	25901	chr2:178098999:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	AC009948.5->chr2:179278666-179304970:+,NFE2L2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:178092323-178257425:-,nuclear_factor,_erythroid_2_like_2	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	ACPL2--FBXO17	2	0	ACPL2	6995	chr3:140979096:+	FBXO17	24736	chr19:39440976:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	ACPL2->chr3:140947568-141013748:+,FBXO17->F-box_protein_17,chr19:39432044-39466550:-	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	A2058_SKIN	1	1	0.0202	TRUE	2	8	0	24	0	FALSE	ACH-000788
A2058_SKIN	CMTM7--OSBPL10	2	0	CMTM7	1395	chr3:32433557:+	OSBPL10	21067	chr3:31921322:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+,OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	CPSF6--RBM48	2	0	CPSF6	11046	chr12:69656342:+	RBM48	25384	chr7:92166165:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,RBM48->RNA_binding_motif_protein_48,chr7:92158087-92167319:+	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	DNAJC24--PRMT3	2	0	DNAJC24	2020	chr11:31392406:+	PRMT3	33676	chr11:20448312:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,PRMT3->chr11:20409076-20530840:+,protein_arginine_methyltransferase_3	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	EMC2--EIF3E	2	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	12	0	TRUE	ACH-000788
A2058_SKIN	G3BP1--SPARC	2	0	G3BP1	1992	chr5:151151597:+	SPARC	30368	chr5:151055762:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	LOCAL_INVERSION:+:-:[83880],G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	MACROD1--ASB1	2	0	MACROD1	3565	chr11:63918711:-	ASB1	15501	chr2:239342195:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-,ASB1->ankyrin_repeat_and_SOCS_box_containing_1,chr2:239335383-239360891:+	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	MKL1--AP000470.2	2	0	MKL1	3549	chr22:40948110:-	AP000470.2	24244	chr21:25559673:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,AP000470.2->chr21:25527484-25560655:-	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	PAPOLA--RP11-371E8.4	2	0	PAPOLA	5951	chr14:96987409:+	RP11-371E8.4	38344	chr14:93678378:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,RP11-371E8.4->chr14:93651318-93684932:+	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	POLE4--MSANTD2	2	0	POLE4	2655	chr2:75187273:+	MSANTD2	11805	chr11:124644870:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,MSANTD2->Myb/SANT_DNA_binding_domain_containing_2,chr11:124636394-124670569:-	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	RBFA--CTDP1	2	0	RBFA	1296	chr18:77794653:+	CTDP1	32161	chr18:77513652:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	RBFA->chr18:77794358-77806397:+,ribosome_binding_factor_A_(putative),CTDP1->CTD_phosphatase_subunit_1,chr18:77439801-77514510:+	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	SIL1--PAIP2	2	0	SIL1	5712	chr5:138533958:-	PAIP2	32374	chr5:138699448:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	LOCAL_INVERSION:-:+:[48030],SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	USP10--COTL1	2	0	USP10	1134	chr16:84733717:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	7	0	TRUE	ACH-000788
A2058_SKIN	USP10--COTL1	2	0	USP10	1134	chr16:84733717:+	COTL1	26655	chr16:84623868:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	A2058_SKIN	1	1	0.0202	TRUE	0	0	0	5	0	TRUE	ACH-000788
A2058_SKIN	RP11-141M1.3--STARD13	1	3	RP11-141M1.3	5599	chr13:34098375:-	STARD13	26750	chr13:33716510:-	ONLY_REF_SPLICE	NO	7	41	0.36	0.09	0.0101	0.0303	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	A2058_SKIN	0.09	0.36	0.0404	FALSE	0	0	0	1	0	FALSE	ACH-000788
A2058_SKIN	GDAP1--RP11-758M4.1	1	2	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	61	0	0.05	1	0.0101	0.0202	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	A2058_SKIN	0.05	1	0.0303	TRUE	7	28	0	43	0	FALSE	ACH-000788
A2058_SKIN	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	22	2	0.12	0.6	0.0101	0.0202	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A2058_SKIN	0.12	0.6	0.0303	FALSE	8	57	1	47	0	FALSE	ACH-000788
A2058_SKIN	AC010987.6--AC010987.5	1	1	AC010987.6	1074	chr2:68052621:-	AC010987.5	7852	chr2:67792776:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0101	0.0101	AC010987.6->chr2:68023186-68052694:-,AC010987.5->chr2:67792736-67911209:-	A2058_SKIN	0.2	1	0.0202	TRUE	0	1	0	1	1	TRUE	ACH-000788
A2058_SKIN	AC010987.6--AC010987.5	1	1	AC010987.6	2180	chr2:68051006:-	AC010987.5	6726	chr2:67911209:-	ONLY_REF_SPLICE	YES	13	0	0.13	1	0.0101	0.0101	AC010987.6->chr2:68023186-68052694:-,AC010987.5->chr2:67792736-67911209:-	A2058_SKIN	0.13	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000788
A2058_SKIN	AP3D1--PLEKHJ1	1	1	AP3D1	10657	chr19:2127151:-	PLEKHJ1	35953	chr19:2230611:-	ONLY_REF_SPLICE	YES	156	15	0.01	0.12	0.0101	0.0101	LOCAL_REARRANGEMENT:-:[65538],AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,PLEKHJ1->chr19:2230002-2237703:-,pleckstrin_homology_domain_containing_J1	A2058_SKIN	0.01	0.12	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000788
A2058_SKIN	CAPRIN1--RPS18	1	1	CAPRIN1	19166	chr11:34119308:+	RPS18	26180	chr6:33240405:+	ONLY_REF_SPLICE	NO	574	167	0	0.01	0.0101	0.0101	CAPRIN1->cell_cycle_associated_protein_1,chr11:34073230-34122703:+,RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18	A2058_SKIN	0	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000788
A2058_SKIN	COG5--PEG10	1	1	COG5	23678	chr7:106871060:-	PEG10	35400	chr7:94292646:+	ONLY_REF_SPLICE	YES	75	666	0.03	0	0.0101	0.0101	COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5,PEG10->Oncogene{Bushman},chr7:94285637-94299007:+,paternally_expressed_10	A2058_SKIN	0	0.03	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000788
A2058_SKIN	DDX27--RBM39	1	1	DDX27	8675	chr20:47846886:+	RBM39	29263	chr20:34320057:-	ONLY_REF_SPLICE	YES	203	399	0.01	0	0.0101	0.0101	DDX27->DEAD-box_helicase_27,chr20:47835884-47860614:+,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	A2058_SKIN	0	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000788
A2058_SKIN	PTBP3--HSDL2	1	1	PTBP3	10849	chr9:114997100:-	HSDL2	34861	chr9:115216293:+	ONLY_REF_SPLICE	YES	82	82	0.02	0.02	0.0101	0.0101	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},LOCAL_INVERSION:-:+:[46270],PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2	A2058_SKIN	0.02	0.02	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000788
A2058_SKIN	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	2	23	0.5	0.08	0.0101	0.0101	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	A2058_SKIN	0.08	0.5	0.0202	FALSE	0	23	1	67	0	FALSE	ACH-000788
A2058_SKIN	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0101	0.0101	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A2058_SKIN	0.67	1	0.0202	FALSE	275	511	55	178	0	FALSE	ACH-000788
A2058_SKIN	SAMD5--SASH1	1	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	NO	1	16	0.67	0.11	0.0101	0.0101	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	A2058_SKIN	0.11	0.67	0.0202	TRUE	53	396	64	110	0	FALSE	ACH-000788
C32_SKIN	PKIG--KMT2A	77	60	PKIG	5692	chr20:43218507:+	KMT2A	36033	chr11:118362459:+	ONLY_REF_SPLICE	YES	332	19	0.29	0.88	0.9015	0.7025	PKIG->Oncogene{Bushman},chr20:43160426-43252888:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_gamma,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	C32_SKIN	0.29	0.88	1.604	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	OR51S1--TP53I11	52	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6088	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	C32_SKIN	1	1	0.6088	TRUE	402	216	10	229	0	FALSE	ACH-000580
C32_SKIN	TIMM23B--LINC00843	48	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.562	0.1522	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	C32_SKIN	1	1	0.7142	TRUE	508	994	45	981	0	FALSE	ACH-000580
C32_SKIN	MT-ND6--MT-TE	26	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.3044	0.0117	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	C32_SKIN	0.96	1	0.3161	FALSE	499	1288	110	792	0	FALSE	ACH-000580
C32_SKIN	NIPA2--POLA1	26	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3044	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	C32_SKIN	1	1	0.3044	TRUE	46	1352	75	139	0	FALSE	ACH-000580
C32_SKIN	TIMM23--RP11-464F9.1	22	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2576	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	C32_SKIN	1	1	0.2576	TRUE	519	3926	326	965	0	FALSE	ACH-000580
C32_SKIN	PKIG--KMT2A	5	64	PKIG	6967	chr20:43227531:+	KMT2A	36033	chr11:118362459:+	ONLY_REF_SPLICE	YES	376	19	0.16	0.78	0.0585	0.7493	PKIG->Oncogene{Bushman},chr20:43160426-43252888:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_gamma,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	C32_SKIN	0.16	0.78	0.8078	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	PKIG--KMT2A	16	13	PKIG	5692	chr20:43218507:+	KMT2A	38392	chr11:118365003:+	ONLY_REF_SPLICE	YES	332	52	0.08	0.36	0.1873	0.1522	PKIG->Oncogene{Bushman},chr20:43160426-43252888:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_gamma,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	C32_SKIN	0.08	0.36	0.3395	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	PKIG--KMT2A	3	60	PKIG	5692	chr20:43218507:+	KMT2A	36017	chr11:118362443:+	INCL_NON_REF_SPLICE	YES	332	23	0.16	0.73	0.0351	0.7025	PKIG->Oncogene{Bushman},chr20:43160426-43252888:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_gamma,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	C32_SKIN	0.16	0.73	0.7376	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	MTAP--FOCAD	13	19	MTAP	1239	chr9:21802780:+	FOCAD	23546	chr9:20658690:+	ONLY_REF_SPLICE	YES	24	0	0.57	1	0.1522	0.2224	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,FOCAD->chr9:20658308-20995954:+,focadhesin	C32_SKIN	0.57	1	0.3746	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	MTAP--FOCAD	14	13	MTAP	1239	chr9:21802780:+	FOCAD	27043	chr9:20715321:+	ONLY_REF_SPLICE	YES	24	1	0.53	0.96	0.1639	0.1522	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,FOCAD->chr9:20658308-20995954:+,focadhesin	C32_SKIN	0.53	0.96	0.3161	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	C15orf57--CBX3	12	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	56	64	0.32	0.29	0.1405	0.1639	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	C32_SKIN	0.29	0.32	0.3044	TRUE	267	562	48	632	0	FALSE	ACH-000580
C32_SKIN	MAST3--CTB-52I2.4	13	8	MAST3	22518	chr19:18258434:+	CTB-52I2.4	30353	chr19:18141505:+	ONLY_REF_SPLICE	YES	1	15	0.95	0.58	0.1522	0.0937	LOCAL_REARRANGEMENT:+:[65694],MAST3->chr19:18208603-18262502:+,microtubule_associated_serine/threonine_kinase_3,CTB-52I2.4->chr19:18133212-18142909:+	C32_SKIN	0.58	0.95	0.2459	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	MT-ND6--MT-TE	13	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1522	0.0937	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	C32_SKIN	0.95	1	0.2459	FALSE	499	1288	110	792	0	FALSE	ACH-000580
C32_SKIN	NDRG3--YAP1	14	2	NDRG3	1034	chr20:35374448:-	YAP1	25400	chr11:101984875:+	ONLY_REF_SPLICE	YES	13	113	0.55	0.12	0.1639	0.0234	NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	C32_SKIN	0.12	0.55	0.1873	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	MT-ND6--MT-TE	14	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1639	0.0117	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	C32_SKIN	0.94	1	0.1756	FALSE	499	1288	110	792	0	FALSE	ACH-000580
C32_SKIN	RP11-444D3.1--SOX5	12	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	5	1	0.78	0.1405	0.0702	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	C32_SKIN	0.78	1	0.2107	TRUE	477	1352	189	275	0	FALSE	ACH-000580
C32_SKIN	SPATS2L--MARCH4	13	1	SPATS2L	2042	chr2:201171645:+	MARCH4	37848	chr2:217148452:-	ONLY_REF_SPLICE	YES	20	0	0.41	1	0.1522	0.0117	SPATS2L->chr2:201170604-201346986:+,spermatogenesis_associated_serine_rich_2_like,MARCH4->chr2:217122588-217236750:-,membrane_associated_ring-CH-type_finger_4	C32_SKIN	0.41	1	0.1639	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	RP1-34H18.1--NAV3	12	4	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1405	0.0468	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	C32_SKIN	1	1	0.1873	TRUE	254	575	65	124	0	FALSE	ACH-000580
C32_SKIN	PSAP--GAPDH	12	1	PSAP	10123	chr10:73579538:-	GAPDH	20232	chr12:6646882:+	INCL_NON_REF_SPLICE	NO	3743	18121	0	0	0.1405	0.0117	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	C32_SKIN	0	0	0.1522	FALSE	0	0	0	4	0	FALSE	ACH-000580
C32_SKIN	RP11-141M1.3--STARD13	11	5	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	9	23	0.64	0.41	0.1288	0.0585	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	C32_SKIN	0.41	0.64	0.1873	FALSE	141	264	50	91	0	FALSE	ACH-000580
C32_SKIN	RP11-141M1.3--STARD13	10	9	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	4	23	0.83	0.45	0.1171	0.1054	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	C32_SKIN	0.45	0.83	0.2225	FALSE	49	120	16	70	0	FALSE	ACH-000580
C32_SKIN	SPATS2L--MARCH4	12	1	SPATS2L	1721	chr2:201171324:+	MARCH4	37848	chr2:217148452:-	ONLY_REF_SPLICE	YES	13	0	0.5	1	0.1405	0.0117	SPATS2L->chr2:201170604-201346986:+,spermatogenesis_associated_serine_rich_2_like,MARCH4->chr2:217122588-217236750:-,membrane_associated_ring-CH-type_finger_4	C32_SKIN	0.5	1	0.1522	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	PKIG--KMT2A	6	24	PKIG	5692	chr20:43218507:+	KMT2A	37218	chr11:118363772:+	ONLY_REF_SPLICE	YES	332	37	0.08	0.45	0.0702	0.281	PKIG->Oncogene{Bushman},chr20:43160426-43252888:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_gamma,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	C32_SKIN	0.08	0.45	0.3512	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	AC024084.1--AC009784.3	10	2	AC024084.1	3174	chr7:135743253:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	1	4	0.92	0.75	0.1171	0.0234	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	C32_SKIN	0.75	0.92	0.1405	FALSE	2	5	0	14	0	FALSE	ACH-000580
C32_SKIN	FAM118B--KIRREL3-AS1	9	4	FAM118B	6012	chr11:126110939:+	KIRREL3-AS1	17779	chr11:126480556:+	ONLY_REF_SPLICE	YES	45	0	0.22	1	0.1054	0.0468	FAM118B->chr11:126081309-126132881:+,family_with_sequence_similarity_118_member_B,KIRREL3-AS1->KIRREL3_antisense_RNA_1,chr11:126413842-126480843:+	C32_SKIN	0.22	1	0.1522	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	C15orf57--CBX3	7	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	54	64	0.24	0.21	0.082	0.1171	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	C32_SKIN	0.21	0.24	0.1991	TRUE	267	562	48	632	0	FALSE	ACH-000580
C32_SKIN	GAPDH--MT-ND4	6	3	GAPDH	4989	chr12:6647105:+	MT-ND4	8808	chrM:11146:+	INCL_NON_REF_SPLICE	YES	14152	11179	0	0	0.0702	0.0351	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	C32_SKIN	0	0	0.1053	FALSE	0	0	0	1	0	FALSE	ACH-000580
C32_SKIN	MT-ND6--MT-TE	5	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0585	0.0468	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	C32_SKIN	0.9	1	0.1053	FALSE	499	1288	110	792	0	FALSE	ACH-000580
C32_SKIN	MTAP--FOCAD	1	19	MTAP	1408	chr9:21802949:+	FOCAD	23546	chr9:20658690:+	ONLY_REF_SPLICE	YES	28	0	0.42	1	0.0117	0.2224	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,FOCAD->chr9:20658308-20995954:+,focadhesin	C32_SKIN	0.42	1	0.2341	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	C32_SKIN	1	1	0.0468	FALSE	499	1288	110	792	0	FALSE	ACH-000580
C32_SKIN	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0468	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	C32_SKIN	1	1	0.0468	FALSE	292	1546	117	613	0	FALSE	ACH-000580
C32_SKIN	PSAP--GAPDH	4	0	PSAP	8533	chr10:73581668:-	GAPDH	20191	chr12:6646841:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	C32_SKIN	1	1	0.0468	TRUE	0	0	0	8	0	TRUE	ACH-000580
C32_SKIN	PSAP--GAPDH	3	1	PSAP	8558	chr10:73581643:-	GAPDH	20214	chr12:6646864:+	INCL_NON_REF_SPLICE	YES	3080	18383	0	0	0.0351	0.0117	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	C32_SKIN	0	0	0.0468	FALSE	0	0	0	8	0	FALSE	ACH-000580
C32_SKIN	RP11-123O10.4--GRIP1	3	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0.0117	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	C32_SKIN	1	1	0.0468	FALSE	416	2512	207	587	0	FALSE	ACH-000580
C32_SKIN	SAMD9L--FAM185BP	3	1	SAMD9L	4591	chr7:92774045:-	FAM185BP	20109	chr7:76713338:-	ONLY_REF_SPLICE	YES	7	0	0.36	1	0.0351	0.0117	SAMD9L->chr7:92759368-92777682:-,sterile_alpha_motif_domain_containing_9_like,FAM185BP->chr7:76713203-76751433:-,family_with_sequence_similarity_185_member_B,_pseudogene	C32_SKIN	0.36	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	CHSY3--HSPA8P4	3	0	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	C32_SKIN	1	1	0.0351	FALSE	89	26	1	44	0	FALSE	ACH-000580
C32_SKIN	PSAP--GAPDH	3	0	PSAP	8522	chr10:73581679:-	GAPDH	20179	chr12:6646829:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	C32_SKIN	1	1	0.0351	TRUE	0	0	0	8	0	TRUE	ACH-000580
C32_SKIN	RP1-34H18.1--RP11-781A6.1	3	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	C32_SKIN	1	1	0.0351	TRUE	94	160	11	37	0	FALSE	ACH-000580
C32_SKIN	RP11-444D3.1--SOX5	1	8	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	6	1	0.6	0.0117	0.0937	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	C32_SKIN	0.6	1	0.1054	TRUE	160	277	29	98	0	FALSE	ACH-000580
C32_SKIN	FGFR2--COL14A1	2	1	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0.0117	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	C32_SKIN	1	1	0.0351	TRUE	0	0	0	32	0	FALSE	ACH-000580
C32_SKIN	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	4	1	0.43	0.0234	0.0117	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	C32_SKIN	0.43	1	0.0351	TRUE	458	1351	185	561	0	FALSE	ACH-000580
C32_SKIN	AC024084.1--AC009784.3	2	0	AC024084.1	2134	chr7:135715781:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	C32_SKIN	1	1	0.0234	FALSE	0	3	0	12	0	FALSE	ACH-000580
C32_SKIN	ATRX--PGK1	2	0	ATRX	1235	chrX:77041468:-	PGK1	52000	chrX:77365364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1	C32_SKIN	1	1	0.0234	TRUE	0	1	0	9	0	TRUE	ACH-000580
C32_SKIN	EPS8--DERA	2	0	EPS8	3576	chr12:15942095:-	DERA	39639	chr12:16109870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:-:+:[28843],EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase	C32_SKIN	1	1	0.0234	TRUE	0	4	0	3	0	TRUE	ACH-000580
C32_SKIN	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	C32_SKIN	1	1	0.0234	TRUE	53	396	64	110	0	FALSE	ACH-000580
C32_SKIN	SCAF4--CHMP1A	2	0	SCAF4	16796	chr21:33057362:-	CHMP1A	27950	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=22;pct=0.25%;dist=Small_Intestine_-_Terminal_Ileum=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Breast_-_Mammary_Tissue=1,Lung=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Brain_-_Frontal_Cortex_(BA9)=1,Uterus=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellar_Hemisphere=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Testis=1,Cells_-_Transformed_fibroblasts=1},SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	C32_SKIN	1	1	0.0234	TRUE	8	8	2	7	0	FALSE	ACH-000580
C32_SKIN	TOP3A--SERPINE2	2	0	TOP3A	10274	chr17:18198017:-	SERPINE2	33797	chr2:224863059:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	TOP3A->chr17:18174742-18218321:-,topoisomerase_(DNA)_III_alpha,SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2	C32_SKIN	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	RPSAP52--HMGA2	1	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	1	81	0.75	0.04	0.0117	0.0234	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	C32_SKIN	0.04	0.75	0.0351	FALSE	0	59	0	125	0	FALSE	ACH-000580
C32_SKIN	DANCR--EEF1D	1	1	DANCR	1530	chr4:53579126:+	EEF1D	18420	chr8:144669022:-	ONLY_REF_SPLICE	YES	286	271	0.01	0.01	0.0117	0.0117	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	C32_SKIN	0.01	0.01	0.0234	FALSE	0	1	0	1	0	FALSE	ACH-000580
C32_SKIN	IMMP2L--MDFIC	1	1	IMMP2L	8349	chr7:111031894:-	MDFIC	22367	chr7:114582330:+	ONLY_REF_SPLICE	NO	192	22	0.01	0.08	0.0117	0.0117	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,MDFIC->MyoD_family_inhibitor_domain_containing,chr7:114562209-114659256:+	C32_SKIN	0.01	0.08	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000580
C32_SKIN	NPC1--CABYR	1	1	NPC1	1612	chr18:21166251:-	CABYR	42770	chr18:21735665:+	ONLY_REF_SPLICE	YES	700	19	0	0.1	0.0117	0.0117	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-,CABYR->calcium_binding_tyrosine_phosphorylation_regulated,chr18:21718942-21741567:+	C32_SKIN	0	0.1	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000580
C32_SKIN	RP11-444D3.1--KRAS	1	1	RP11-444D3.1	4602	chr12:24521497:-	KRAS	13880	chr12:25398329:-	ONLY_REF_SPLICE	YES	4	39	0.33	0.05	0.0117	0.0117	RP11-444D3.1->chr12:24366190-24715524:-,KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-	C32_SKIN	0.05	0.33	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000580
C32_SKIN	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	25	1	0.07	0.0117	0.0117	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	C32_SKIN	0.07	1	0.0234	TRUE	465	1949	224	605	0	FALSE	ACH-000580
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--PELI1	4	0	CALM3	7082	chr19:47112584:+	PELI1	21467	chr2:64320604:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0808	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,PELI1->chr2:64319786-64371588:-,pellino_E3_ubiquitin_protein_ligase_1	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TP53BP1--PSMA4	4	0	TP53BP1	3595	chr15:43785235:-	PSMA4	40594	chr15:78837211:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0808	0	TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1,PSMA4->chr15:78832747-78841604:+,proteasome_subunit_alpha_4	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC009403.2--P4HB	3	0	AC009403.2	2738	chr7:155436162:-	P4HB	15498	chr17:79803106:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0606	0	AC009403.2->chr7:155403925-155437899:-,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AKNA--ST6GAL1	3	0	AKNA	3584	chr9:117143414:-	ST6GAL1	59204	chr3:186795300:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	AKNA->AT-hook_transcription_factor,chr9:117096436-117156685:-,ST6GAL1->Oncogene{Bushman},ST6_beta-galactoside_alpha-2,6-sialyltransferase_1,chr3:186648274-186796341:+	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELF1--ZNF587	3	0	ELF1	10724	chr13:41515469:-	ZNF587	27346	chr19:58376231:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-,ZNF587->chr19:58361225-58376480:+,zinc_finger_protein_587	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HMG20B--FAM102A	3	0	HMG20B	7234	chr19:3579008:+	FAM102A	18458	chr9:130707800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	HMG20B->chr19:3572775-3579086:+,high_mobility_group_20B,FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	FALSE	499	1288	110	792	0	FALSE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PFN1--CSNK2A2	3	0	PFN1	4183	chr17:4849174:-	CSNK2A2	19606	chr16:58197092:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	PFN1->Oncogene{Bushman},chr17:4848947-4852356:-,profilin_1,CSNK2A2->casein_kinase_2_alpha_2,chr16:58191811-58231824:-	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHF14--ANP32B	3	0	PHF14	1437	chr7:11013935:+	ANP32B	29994	chr9:100745795:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP4R2--RPL37A	3	0	PPP4R2	2374	chr3:73047309:+	RPL37A	26302	chr2:217393993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0606	0	PPP4R2->chr3:73045936-73118350:+,protein_phosphatase_4_regulatory_subunit_2,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRRC2A--ATP5G2	3	0	PRRC2A	13066	chr6:31601393:+	ATP5G2	23975	chr12:54066408:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	PRRC2A->chr6:31588497-31605548:+,proline_rich_coiled-coil_2A,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PUS10--GSTP1	3	0	PUS10	1912	chr2:61244483:-	GSTP1	27805	chr11:67352177:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	PUS10->Oncogene{Bushman},chr2:61167357-61245394:-,pseudouridylate_synthase_10,GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFAS1--CLPTM1L	3	0	ZFAS1	2031	chr20:47895745:+	CLPTM1L	14414	chr5:1334498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0606	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABCB7--FGFR1OP	2	0	ABCB7	1628	chrX:74375940:-	FGFR1OP	27142	chr6:167435897:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	ABCB7->ATP_binding_cassette_subfamily_B_member_7,chrX:74273115-74376567:-,FGFR1OP->FGFR1_oncogene_partner,Oncogene{Bushman},chr6:167412670-167466201:+	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HMGCR--SRSF10	2	0	HMGCR	11477	chr5:74647140:+	SRSF10	24773	chr1:24304763:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	HMGCR->3-hydroxy-3-methylglutaryl-CoA_reductase,Oncogene{Bushman},chr5:74632154-74657929:+,SRSF10->chr1:24291294-24307417:-,serine/arginine-rich_splicing_factor_10	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NARF--TBK1	2	0	NARF	2893	chr17:80417948:+	TBK1	36319	chr12:64889263:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	NARF->chr17:80416056-80448413:+,nuclear_prelamin_A_recognition_factor,TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPLB--HIP1	2	0	PTPLB	5010	chr3:123247233:-	HIP1	21877	chr7:75228565:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	{Klijn_CCL:Lymphoid=1},PTPLB->chr3:123209667-123304032:-,HIP1->Oncogene{Bushman},chr7:75162621-75368280:-,huntingtin_interacting_protein_1	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--OXNAD1	2	0	RFTN1	2243	chr3:16554291:-	OXNAD1	30717	chr3:16336363:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},NEIGHBORS_OVERLAP:-:+:[36725],RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,OXNAD1->chr3:16306706-16391806:+,oxidoreductase_NAD_binding_domain_containing_1	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0404	FALSE	0	0	0	1	0	FALSE	ACH-000534
WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TFRC--PAK2	2	0	TFRC	1147	chr3:195808914:-	PAK2	28987	chr3:196509497:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor,PAK2->chr3:196466728-196559518:+,p21_(RAC1)_activated_kinase_2	WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000534
OE33_OESOPHAGUS	SF1--MEN1	298	160	SF1	3289	chr11:64543970:-	MEN1	18872	chr11:64575571:-	ONLY_REF_SPLICE	YES	250	91	0.65	0.83	3.1431	1.6876	LOCAL_REARRANGEMENT:-:[24724],SF1->chr11:64532078-64546258:-,splicing_factor_1,MEN1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:64570982-64578766:-,menin_1	OE33_OESOPHAGUS	0.65	0.83	4.8307	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	TIMM23B--LINC00843	142	42	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4977	0.443	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OE33_OESOPHAGUS	1	1	1.9407	TRUE	508	994	45	981	0	FALSE	ACH-000383
OE33_OESOPHAGUS	THRA--ACLY	98	6	THRA	3378	chr17:38219345:+	ACLY	32634	chr17:40058066:-	ONLY_REF_SPLICE	YES	0	124	1	0.46	1.0336	0.0633	THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha,ACLY->ATP_citrate_lyase,chr17:40023161-40086795:-	OE33_OESOPHAGUS	0.46	1	1.0969	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	TIMM23--RP11-464F9.1	85	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	309	4	0.22	0.96	0.8965	0.0211	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OE33_OESOPHAGUS	0.22	0.96	0.9176	TRUE	519	3926	326	965	0	FALSE	ACH-000383
OE33_OESOPHAGUS	KANSL1--ARL17B	79	24	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	28	46	0.79	0.69	0.8332	0.2531	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	OE33_OESOPHAGUS	0.69	0.79	1.0863	TRUE	181	1564	124	196	0	FALSE	ACH-000383
OE33_OESOPHAGUS	CUX1--HBP1	75	30	CUX1	13547	chr7:101747739:+	HBP1	69232	chr7:106836279:+	ONLY_REF_SPLICE	YES	204	86	0.34	0.55	0.791	0.3164	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,HBP1->HMG-box_transcription_factor_1,Oncogene{Bushman},chr7:106809406-106842974:+	OE33_OESOPHAGUS	0.34	0.55	1.1074	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	CCAT1--CASC8	70	46	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	50	0	0.7	1	0.7383	0.4852	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	OE33_OESOPHAGUS	0.7	1	1.2235	TRUE	0	7	0	14	6	TRUE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO2	44	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	42	6	0.53	0.89	0.4641	0.0316	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OE33_OESOPHAGUS	0.53	0.89	0.4957	FALSE	59	21	0	114	0	FALSE	ACH-000383
OE33_OESOPHAGUS	THRA--ACLY	32	4	THRA	3378	chr17:38219345:+	ACLY	33752	chr17:40055038:-	ONLY_REF_SPLICE	YES	0	152	1	0.19	0.3375	0.0422	THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha,ACLY->ATP_citrate_lyase,chr17:40023161-40086795:-	OE33_OESOPHAGUS	0.19	1	0.3797	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	ACLY--WIPF2	30	11	ACLY	10777	chr17:40060982:-	WIPF2	36093	chr17:38412643:+	ONLY_REF_SPLICE	YES	135	16	0.23	0.72	0.3164	0.116	ACLY->ATP_citrate_lyase,chr17:40023161-40086795:-,WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+	OE33_OESOPHAGUS	0.23	0.72	0.4324	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	HSP90AB1--MT-RNR2	22	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3100	0	0.01	1	0.232	0.0105	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OE33_OESOPHAGUS	0.01	1	0.2425	FALSE	13	9	0	364	0	FALSE	ACH-000383
OE33_OESOPHAGUS	CCAT1--CASC8	15	19	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	50	15	0.4	0.69	0.1582	0.2004	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	OE33_OESOPHAGUS	0.4	0.69	0.3586	TRUE	0	26	0	18	24	TRUE	ACH-000383
OE33_OESOPHAGUS	MT-TA--MT-TC	18	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1898	0.0738	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE33_OESOPHAGUS	1	1	0.2636	FALSE	462	80	0	856	0	FALSE	ACH-000383
OE33_OESOPHAGUS	RP11-114H23.1--RP11-114H23.2	18	4	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.1898	0.0422	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	OE33_OESOPHAGUS	0.96	1	0.232	FALSE	81	155	12	160	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ND6--MT-TE	18	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1898	0.0211	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE33_OESOPHAGUS	1	1	0.2109	FALSE	499	1288	110	792	0	FALSE	ACH-000383
OE33_OESOPHAGUS	EEF2--PIAS4	18	0	EEF2	1092	chr19:3985376:-	PIAS4	14401	chr19:4012921:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1898	0	LOCAL_INVERSION:-:+:[22177],EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,PIAS4->chr19:4007644-4039384:+,protein_inhibitor_of_activated_STAT_4	OE33_OESOPHAGUS	1	1	0.1898	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	JUP--MT-CO3	16	8	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	5329	14364	0	0	0.1688	0.0844	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OE33_OESOPHAGUS	0	0	0.2532	FALSE	0	0	0	33	0	FALSE	ACH-000383
OE33_OESOPHAGUS	CCAT1--CASC8	8	33	CCAT1	1274	chr8:128231060:-	CASC8	14106	chr8:128335399:-	INCL_NON_REF_SPLICE	YES	36	0	0.53	1	0.0844	0.3481	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	OE33_OESOPHAGUS	0.53	1	0.4325	TRUE	0	7	0	14	6	TRUE	ACH-000383
OE33_OESOPHAGUS	RP11-1407O15.2--GSDMA	12	7	RP11-1407O15.2	2489	chr17:36412905:-	GSDMA	31271	chr17:38121936:+	ONLY_REF_SPLICE	YES	728	1	0.03	0.95	0.1266	0.0738	RP11-1407O15.2->chr17:36337717-36421858:-,GSDMA->Oncogene{Bushman},chr17:38119226-38134019:+,gasdermin_A	OE33_OESOPHAGUS	0.03	0.95	0.2004	TRUE	0	0	0	1	0	FALSE	ACH-000383
OE33_OESOPHAGUS	JUP--MT-CO3	9	18	JUP	8242	chr17:39923795:-	MT-CO3	24128	chrM:9574:+	INCL_NON_REF_SPLICE	YES	5094	14060	0.01	0	0.0949	0.1898	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OE33_OESOPHAGUS	0	0.01	0.2847	FALSE	0	0	0	33	0	FALSE	ACH-000383
OE33_OESOPHAGUS	HSP90AB1--MT-RNR2	13	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3104	0	0	1	0.1371	0.0105	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OE33_OESOPHAGUS	0	1	0.1476	FALSE	13	9	0	364	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ND6--MT-TE	12	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1266	0.0211	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE33_OESOPHAGUS	1	1	0.1477	FALSE	499	1288	110	792	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ND4--MT-ATP8	12	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10829	3	0	0.81	0.1266	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OE33_OESOPHAGUS	0	0.81	0.1371	FALSE	230	198	14	283	0	FALSE	ACH-000383
OE33_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	10	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.1055	0.0633	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OE33_OESOPHAGUS	0.89	1	0.1688	FALSE	515	4851	409	746	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO1	11	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	9434	23026	0	0	0.116	0.0105	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE33_OESOPHAGUS	0	0	0.1265	FALSE	183	104	9	328	0	FALSE	ACH-000383
OE33_OESOPHAGUS	ALDOA--HMGA1	11	0	ALDOA	7440	chr16:30077212:+	HMGA1	20953	chr6:34212956:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.116	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,HMGA1->Oncogene{Bushman},chr6:34204650-34214008:+,high_mobility_group_AT-hook_1	OE33_OESOPHAGUS	1	1	0.116	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	MT-ND6--MT-TE	8	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0844	0.1055	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE33_OESOPHAGUS	0.95	1	0.1899	FALSE	499	1288	110	792	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-RNR2	10	1	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	10764	11018	0	0	0.1055	0.0105	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OE33_OESOPHAGUS	0	0	0.116	FALSE	63	17	1	58	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ND4--MT-ATP8	8	9	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2002	40	0.01	0.3	0.0844	0.0949	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OE33_OESOPHAGUS	0.01	0.3	0.1793	FALSE	216	209	16	281	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ND4--MT-ATP8	10	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	10825	2	0	0.85	0.1055	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OE33_OESOPHAGUS	0	0.85	0.116	FALSE	230	193	14	283	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-TA--MT-TC	7	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0738	0.0738	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE33_OESOPHAGUS	1	1	0.1476	FALSE	462	80	0	856	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO1	8	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9462	26017	0	0	0.0844	0.0105	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE33_OESOPHAGUS	0	0	0.0949	FALSE	183	104	9	328	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ND6--MT-TE	4	15	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0422	0.1582	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE33_OESOPHAGUS	0.95	1	0.2004	FALSE	499	1288	110	792	0	FALSE	ACH-000383
OE33_OESOPHAGUS	C15orf57--CBX3	7	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	42	33	0.18	0.21	0.0738	0.0211	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OE33_OESOPHAGUS	0.18	0.21	0.0949	TRUE	267	562	48	632	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO1	7	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11194	25839	0	0	0.0738	0.0211	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE33_OESOPHAGUS	0	0	0.0949	FALSE	183	104	9	328	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ND4--MT-ATP8	7	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12725	3	0	0.75	0.0738	0.0211	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OE33_OESOPHAGUS	0	0.75	0.0949	FALSE	231	205	14	283	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ND4--MT-ATP8	6	6	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	13105	3	0	0.8	0.0633	0.0633	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OE33_OESOPHAGUS	0	0.8	0.1266	FALSE	231	217	16	283	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-RNR2	7	1	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	10329	10772	0	0	0.0738	0.0105	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OE33_OESOPHAGUS	0	0	0.0843	FALSE	63	17	1	58	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0738	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE33_OESOPHAGUS	1	1	0.0738	FALSE	462	80	0	856	0	FALSE	ACH-000383
OE33_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	5	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.87	1	0.0527	0.0844	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OE33_OESOPHAGUS	0.87	1	0.1371	FALSE	407	2205	196	549	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO2	6	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	42	3	0.18	0.75	0.0633	0.0316	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OE33_OESOPHAGUS	0.18	0.75	0.0949	FALSE	59	21	0	114	0	FALSE	ACH-000383
OE33_OESOPHAGUS	STAT3--ACLY	6	3	STAT3	23055	chr17:40466374:-	ACLY	34021	chr17:40063825:-	INCL_NON_REF_SPLICE	YES	37	140	0.2	0.06	0.0633	0.0316	STAT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:40465342-40540586:-,signal_transducer_and_activator_of_transcription_3,ACLY->ATP_citrate_lyase,chr17:40023161-40086795:-	OE33_OESOPHAGUS	0.06	0.2	0.0949	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	MT-ND4--MT-ATP8	5	6	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	15185	0	0	1	0.0527	0.0633	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OE33_OESOPHAGUS	0	1	0.116	FALSE	231	217	16	283	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO1	6	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	8867	23333	0	0	0.0633	0.0105	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE33_OESOPHAGUS	0	0	0.0738	FALSE	183	104	9	328	0	FALSE	ACH-000383
OE33_OESOPHAGUS	NRIP1--AF127936.7	6	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	36	2	0.16	0.78	0.0633	0.0105	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OE33_OESOPHAGUS	0.16	0.78	0.0738	FALSE	164	806	69	479	0	FALSE	ACH-000383
OE33_OESOPHAGUS	RP11-123O10.4--GRIP1	6	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0633	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OE33_OESOPHAGUS	1	1	0.0633	FALSE	416	2512	207	587	0	FALSE	ACH-000383
OE33_OESOPHAGUS	JUP--MT-CO3	3	11	JUP	8256	chr17:39923781:-	MT-CO3	24151	chrM:9597:+	INCL_NON_REF_SPLICE	YES	4803	13273	0	0	0.0316	0.116	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OE33_OESOPHAGUS	0	0	0.1476	FALSE	0	0	0	33	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO2	5	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	39	3	0.17	0.73	0.0527	0.0316	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OE33_OESOPHAGUS	0.17	0.73	0.0843	FALSE	59	21	0	114	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ND4--MT-ATP8	4	7	MT-ND4	1779	chrM:11538:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12983	40	0	0.22	0.0422	0.0738	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OE33_OESOPHAGUS	0	0.22	0.116	FALSE	231	217	16	283	0	FALSE	ACH-000383
OE33_OESOPHAGUS	ERBB2--JUP	5	2	ERBB2	16192	chr17:37872192:+	JUP	44508	chr17:39911684:-	ONLY_REF_SPLICE	YES	1486	4274	0	0	0.0527	0.0211	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Skin=[count:6=pct:1.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=12;pct=0.14%;dist=Skin_-_Sun_Exposed_(Lower_leg)=7,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Esophagus_-_Mucosa=2},ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,JUP->chr17:39775692-39943183:-,junction_plakoglobin	OE33_OESOPHAGUS	0	0	0.0738	FALSE	7	23	1	2	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MRC2--KRT33B	5	2	MRC2	15392	chr17:60759738:+	KRT33B	26100	chr17:39524242:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0527	0.0211	MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2,KRT33B->chr17:39519746-39526052:-,keratin_33B	OE33_OESOPHAGUS	0.88	1	0.0738	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO2	5	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	37	3	0.16	0.7	0.0527	0.0211	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OE33_OESOPHAGUS	0.16	0.7	0.0738	FALSE	59	21	0	114	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO1	5	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	9395	25478	0	0	0.0527	0.0105	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE33_OESOPHAGUS	0	0	0.0632	FALSE	183	104	9	328	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OE33_OESOPHAGUS	1	1	0.0527	FALSE	63	17	1	58	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ND4--MT-ATP8	3	8	MT-ND4	1824	chrM:11583:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12465	3	0	0.79	0.0316	0.0844	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OE33_OESOPHAGUS	0	0.79	0.116	FALSE	231	217	16	283	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-TA--MT-TC	3	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.0844	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE33_OESOPHAGUS	1	1	0.116	FALSE	462	80	0	856	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO2	4	3	MT-ATP6	1555	chrM:9081:+	MT-CO2	4955	chrM:7859:+	INCL_NON_REF_SPLICE	YES	3	10	0.7	0.41	0.0422	0.0316	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OE33_OESOPHAGUS	0.41	0.7	0.0738	FALSE	59	21	0	114	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO2	4	3	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	42	3	0.14	0.7	0.0422	0.0316	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OE33_OESOPHAGUS	0.14	0.7	0.0738	FALSE	59	21	0	114	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ND4--MT-ATP8	4	3	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	14949	1434	0	0	0.0422	0.0316	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OE33_OESOPHAGUS	0	0	0.0738	FALSE	231	205	14	283	0	FALSE	ACH-000383
OE33_OESOPHAGUS	GLG1--RFWD3	4	2	GLG1	1458	chr16:74640555:-	RFWD3	46405	chr16:74670475:-	ONLY_REF_SPLICE	YES	34	52	0.15	0.1	0.0422	0.0211	LOCAL_REARRANGEMENT:-:[14280],GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,RFWD3->chr16:74655292-74700779:-,ring_finger_and_WD_repeat_domain_3	OE33_OESOPHAGUS	0.1	0.15	0.0633	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	MT-ND4--MT-ATP8	3	6	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	14319	0	0	1	0.0316	0.0633	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OE33_OESOPHAGUS	0	1	0.0949	FALSE	231	217	16	283	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO1	3	5	MT-ATP6	1516	chrM:9042:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	NO	5335	26362	0	0	0.0316	0.0527	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE33_OESOPHAGUS	0	0	0.0843	FALSE	183	104	9	328	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OE33_OESOPHAGUS	1	1	0.0422	FALSE	63	17	1	58	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1123	chrM:8649:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OE33_OESOPHAGUS	1	1	0.0422	FALSE	63	17	1	58	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ND4--MT-ATP8	3	4	MT-ND4	1457	chrM:11216:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	15133	59	0	0.11	0.0316	0.0422	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OE33_OESOPHAGUS	0	0.11	0.0738	FALSE	231	217	16	283	0	FALSE	ACH-000383
OE33_OESOPHAGUS	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0422	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OE33_OESOPHAGUS	1	1	0.0422	FALSE	292	1546	117	613	0	FALSE	ACH-000383
OE33_OESOPHAGUS	VTI1A--RP11-57H14.3	4	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0422	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	OE33_OESOPHAGUS	1	1	0.0422	FALSE	272	151	14	158	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO1	3	3	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	10105	0	0	1	0.0316	0.0316	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE33_OESOPHAGUS	0	1	0.0632	FALSE	182	97	9	327	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO1	3	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	NO	11194	0	0	1	0.0316	0.0316	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE33_OESOPHAGUS	0	1	0.0632	FALSE	182	97	9	327	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO1	3	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	10623	23762	0	0	0.0316	0.0211	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE33_OESOPHAGUS	0	0	0.0527	FALSE	183	104	9	328	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO1	3	2	MT-ATP6	1133	chrM:8659:+	MT-CO1	5176	chrM:6398:+	INCL_NON_REF_SPLICE	YES	9549	22974	0	0	0.0316	0.0211	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE33_OESOPHAGUS	0	0	0.0527	FALSE	183	104	9	328	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO2	3	2	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	35	3	0.12	0.62	0.0316	0.0211	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OE33_OESOPHAGUS	0.12	0.62	0.0527	FALSE	59	21	0	114	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO2	3	2	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	22	3	0.19	0.62	0.0316	0.0211	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OE33_OESOPHAGUS	0.19	0.62	0.0527	FALSE	59	21	0	114	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO2	3	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	22	3	0.19	0.62	0.0316	0.0211	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OE33_OESOPHAGUS	0.19	0.62	0.0527	FALSE	59	21	0	114	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-CO2--MT-ND2	3	2	MT-CO2	1231	chrM:7816:+	MT-ND2	4715	chrM:4500:+	INCL_NON_REF_SPLICE	YES	14782	0	0	1	0.0316	0.0211	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OE33_OESOPHAGUS	0	1	0.0527	FALSE	105	46	5	21	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ND4--MT-ATP8	3	2	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	11037	0	0	1	0.0316	0.0211	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OE33_OESOPHAGUS	0	1	0.0527	FALSE	231	204	14	283	0	FALSE	ACH-000383
OE33_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0.0633	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OE33_OESOPHAGUS	1	1	0.0844	FALSE	467	2173	244	435	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO2	3	1	MT-ATP6	1138	chrM:8664:+	MT-CO2	4988	chrM:7892:+	INCL_NON_REF_SPLICE	YES	39	8	0.09	0.33	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OE33_OESOPHAGUS	0.09	0.33	0.0421	FALSE	59	21	0	114	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	10764	0	0	1	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OE33_OESOPHAGUS	0	1	0.0421	FALSE	63	17	1	58	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ND4--MT-ATP8	3	1	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	11226	466	0	0.01	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OE33_OESOPHAGUS	0	0.01	0.0421	FALSE	231	204	14	283	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ND4--MT-ATP8	3	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10825	3	0	0.57	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OE33_OESOPHAGUS	0	0.57	0.0421	FALSE	230	193	14	283	0	FALSE	ACH-000383
OE33_OESOPHAGUS	KANSL1--ARL17B	1	8	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	39	46	0.19	0.16	0.0105	0.0844	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	OE33_OESOPHAGUS	0.16	0.19	0.0949	TRUE	105	90	7	93	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-CO2	3	0	MT-ATP6	1142	chrM:8668:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OE33_OESOPHAGUS	1	1	0.0316	FALSE	59	21	0	114	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OE33_OESOPHAGUS	1	1	0.0316	FALSE	63	17	1	58	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OE33_OESOPHAGUS	1	1	0.0316	FALSE	63	17	1	58	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-CO2--MT-ND2	3	0	MT-CO2	1278	chrM:7863:+	MT-ND2	5431	chrM:5216:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OE33_OESOPHAGUS	1	1	0.0316	FALSE	105	46	5	21	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-CO2--MT-ND2	3	0	MT-CO2	1345	chrM:7930:+	MT-ND2	5570	chrM:5355:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OE33_OESOPHAGUS	1	1	0.0316	FALSE	105	46	5	21	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-CO2--MT-ND2	3	0	MT-CO2	1240	chrM:7825:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OE33_OESOPHAGUS	1	1	0.0316	FALSE	105	46	5	21	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-CO2--MT-ND2	3	0	MT-CO2	1276	chrM:7861:+	MT-ND2	5365	chrM:5150:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OE33_OESOPHAGUS	1	1	0.0316	FALSE	105	46	5	21	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE33_OESOPHAGUS	1	1	0.0316	FALSE	499	1288	110	792	0	FALSE	ACH-000383
OE33_OESOPHAGUS	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE33_OESOPHAGUS	1	1	0.0316	FALSE	499	1288	110	792	0	FALSE	ACH-000383
OE33_OESOPHAGUS	NRIP1--AF127936.7	3	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OE33_OESOPHAGUS	1	1	0.0316	FALSE	125	705	46	456	0	FALSE	ACH-000383
OE33_OESOPHAGUS	RP11-114H23.1--RP11-114H23.2	2	4	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	1	3	0.86	0.67	0.0211	0.0422	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	OE33_OESOPHAGUS	0.67	0.86	0.0633	FALSE	81	155	12	160	0	FALSE	ACH-000383
OE33_OESOPHAGUS	RP11-255B23.4--CASC8	3	0	RP11-255B23.4	1060	chr8:128215408:-	CASC8	13502	chr8:128335399:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	OE33_OESOPHAGUS	1	1	0.0316	TRUE	0	0	0	3	0	TRUE	ACH-000383
OE33_OESOPHAGUS	SLCO4A1--ADRM1	3	0	SLCO4A1	1109	chr20:61273905:+	ADRM1	21543	chr20:60881253:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_v2:{count=1;pct=0.01%;dist=Kidney_-_Cortex=1},{Klijn_CCL:Colo-Rectal=1},SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,ADRM1->adhesion_regulating_molecule_1,chr20:60877149-60883918:+	OE33_OESOPHAGUS	1	1	0.0316	TRUE	0	0	0	2	0	TRUE	ACH-000383
OE33_OESOPHAGUS	TMSB10--KRT19	3	0	TMSB10	1922	chr2:85133670:+	KRT19	5491	chr17:39684117:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,KRT19->chr17:39679869-39684560:-,keratin_19	OE33_OESOPHAGUS	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	CUX1--HBP1	1	5	CUX1	13547	chr7:101747739:+	HBP1	71521	chr7:106840605:+	ONLY_REF_SPLICE	YES	204	136	0.03	0.04	0.0105	0.0527	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,HBP1->HMG-box_transcription_factor_1,Oncogene{Bushman},chr7:106809406-106842974:+	OE33_OESOPHAGUS	0.03	0.04	0.0632	TRUE	0	0	0	1	0	FALSE	ACH-000383
OE33_OESOPHAGUS	GATS--PILRB	2	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	18	197	0.14	0.01	0.0211	0.0105	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	OE33_OESOPHAGUS	0.01	0.14	0.0316	FALSE	57	41	2	35	0	FALSE	ACH-000383
OE33_OESOPHAGUS	CAPZA2--TES	2	0	CAPZA2	3371	chr7:116502704:+	TES	27852	chr7:115874588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	OE33_OESOPHAGUS	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	EEF2--ZBTB7A	2	0	EEF2	1092	chr19:3985376:-	ZBTB7A	15775	chr19:4055245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_REARRANGEMENT:-:[58895],EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,ZBTB7A->chr19:4044362-4066943:-,zinc_finger_and_BTB_domain_containing_7A	OE33_OESOPHAGUS	1	1	0.0211	TRUE	0	1	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	ERBB2--JUP	2	0	ERBB2	10249	chr17:37864787:+	JUP	34219	chr17:39928114:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Skin=[count:6=pct:1.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=12;pct=0.14%;dist=Skin_-_Sun_Exposed_(Lower_leg)=7,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Esophagus_-_Mucosa=2},ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,JUP->chr17:39775692-39943183:-,junction_plakoglobin	OE33_OESOPHAGUS	1	1	0.0211	TRUE	0	0	0	1	0	FALSE	ACH-000383
OE33_OESOPHAGUS	FOXO1--UBL3	2	0	FOXO1	2015	chr13:41239720:-	UBL3	14459	chr13:30351400:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3	OE33_OESOPHAGUS	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000383
OE33_OESOPHAGUS	KANSL1--ARL17B	1	4	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	NO	28	32	0.15	0.14	0.0105	0.0422	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	OE33_OESOPHAGUS	0.14	0.15	0.0527	TRUE	20	16	0	28	0	FALSE	ACH-000383
OE33_OESOPHAGUS	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	OE33_OESOPHAGUS	1	1	0.0211	TRUE	145	312	16	51	0	FALSE	ACH-000383
OE33_OESOPHAGUS	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OE33_OESOPHAGUS	1	1	0.0211	FALSE	25	145	6	90	0	FALSE	ACH-000383
OE33_OESOPHAGUS	RP11-114H23.1--RP11-114H23.2	1	4	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0105	0.0422	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	OE33_OESOPHAGUS	0.83	1	0.0527	FALSE	5	9	0	20	0	FALSE	ACH-000383
OE33_OESOPHAGUS	RP11-255B23.4--CASC8	1	4	RP11-255B23.4	2391	chr8:128200030:-	CASC8	13502	chr8:128335399:-	ONLY_REF_SPLICE	YES	18	0	0.22	1	0.0105	0.0422	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	OE33_OESOPHAGUS	0.22	1	0.0527	TRUE	0	1	0	2	1	TRUE	ACH-000383
OE33_OESOPHAGUS	PTPLAD1--SMAD6	1	3	PTPLAD1	1301	chr15:65823056:+	SMAD6	29308	chr15:67073335:+	ONLY_REF_SPLICE	YES	233	33	0.02	0.11	0.0105	0.0316	PTPLAD1->chr15:65822756-65870687:+,SMAD6->SMAD_family_member_6,chr15:66994566-67074338:+	OE33_OESOPHAGUS	0.02	0.11	0.0421	TRUE	0	0	0	1	0	FALSE	ACH-000383
OE33_OESOPHAGUS	AP000350.4--RPS15A	1	2	AP000350.4	3772	chr22:24236613:-	RPS15A	8037	chr16:18800441:-	ONLY_REF_SPLICE	YES	0	19	1	0.14	0.0105	0.0211	AP000350.4->chr22:24236613-24241117:-,RPS15A->chr16:18792617-18801705:-,ribosomal_protein_S15a	OE33_OESOPHAGUS	0.14	1	0.0316	TRUE	0	0	0	2	0	TRUE	ACH-000383
OE33_OESOPHAGUS	AC002066.1--TES	1	1	AC002066.1	2203	chr7:116122867:-	TES	17815	chr7:115891814:+	ONLY_REF_SPLICE	YES	1	1012	0.67	0	0.0105	0.0105	NEIGHBORS_OVERLAP:-:+:[20523],AC002066.1->chr7:115878314-116139519:-,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	OE33_OESOPHAGUS	0	0.67	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000383
OE33_OESOPHAGUS	ARHGEF28--BTF3	1	1	ARHGEF28	3185	chr5:72980709:+	BTF3	56982	chr5:72798313:+	ONLY_REF_SPLICE	YES	52	1895	0.04	0	0.0105	0.0105	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},ARHGEF28->Rho_guanine_nucleotide_exchange_factor_28,chr5:72921983-73237818:+,BTF3->basic_transcription_factor_3,chr5:72794233-72801460:+	OE33_OESOPHAGUS	0	0.04	0.021	FALSE	0	5	0	3	4	FALSE	ACH-000383
OE33_OESOPHAGUS	ATP2B4--MDH1	1	1	ATP2B4	22249	chr1:203696699:+	MDH1	37665	chr2:63821622:+	ONLY_REF_SPLICE	YES	38	14	0.05	0.12	0.0105	0.0105	ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,MDH1->chr2:63815743-63834331:+,malate_dehydrogenase_1	OE33_OESOPHAGUS	0.05	0.12	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000383
NCIH2405_LUNG	TIMM23B--LINC00843	154	35	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.5977	0.3631	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2405_LUNG	0.99	1	1.9608	TRUE	508	994	45	981	0	FALSE	ACH-000121
NCIH2405_LUNG	RP11-732M18.3--GTF2H5	99	19	RP11-732M18.3	1116	chr6:158703410:+	GTF2H5	7538	chr6:158613009:+	ONLY_REF_SPLICE	YES	0	188	1	0.39	1.0271	0.1971	LOCAL_REARRANGEMENT:+:[82919],RP11-732M18.3->chr6:158703295-158733390:+,GTF2H5->chr6:158589384-158620376:+,general_transcription_factor_IIH_subunit_5	NCIH2405_LUNG	0.39	1	1.2242	TRUE	0	0	0	1	0	TRUE	ACH-000121
NCIH2405_LUNG	TIMM23--RP11-464F9.1	88	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	214	6	0.3	0.94	0.913	0.0207	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2405_LUNG	0.3	0.94	0.9337	TRUE	519	3926	326	965	0	FALSE	ACH-000121
NCIH2405_LUNG	NCOR2--SCARB1	66	11	NCOR2	2329	chr12:125020111:-	SCARB1	76226	chr12:125272003:-	ONLY_REF_SPLICE	YES	3	202	0.96	0.28	0.6847	0.1141	YOSHIHARA_TCGA_num_samples[BRCA:1|LAML:1|LUAD:2],NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1	NCIH2405_LUNG	0.28	0.96	0.7988	TRUE	0	1	0	1	1	TRUE	ACH-000121
NCIH2405_LUNG	NCOR2--SCARB1	49	23	NCOR2	3484	chr12:125002686:-	SCARB1	76226	chr12:125272003:-	ONLY_REF_SPLICE	YES	21	202	0.77	0.26	0.5084	0.2386	YOSHIHARA_TCGA_num_samples[BRCA:1|LAML:1|LUAD:2],NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1	NCIH2405_LUNG	0.26	0.77	0.747	TRUE	0	0	0	1	0	TRUE	ACH-000121
NCIH2405_LUNG	MT-ND6--MT-TE	38	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.3942	0.0311	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2405_LUNG	0.98	1	0.4253	FALSE	499	1288	110	792	0	FALSE	ACH-000121
NCIH2405_LUNG	KLHDC4--RP4-536B24.3	20	5	KLHDC4	7522	chr16:87788800:-	RP4-536B24.3	33483	chr16:87814401:-	ONLY_REF_SPLICE	YES	29	0	0.46	1	0.2075	0.0519	LOCAL_REARRANGEMENT:-:[14142],KLHDC4->chr16:87730091-87799598:-,kelch_domain_containing_4,RP4-536B24.3->chr16:87813740-87840082:-	NCIH2405_LUNG	0.46	1	0.2594	TRUE	0	0	0	1	0	TRUE	ACH-000121
NCIH2405_LUNG	MT-TA--MT-TC	20	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2075	0.0311	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2405_LUNG	1	1	0.2386	FALSE	462	80	0	856	0	FALSE	ACH-000121
NCIH2405_LUNG	MIR137HG--DPYD	20	1	MIR137HG	3106	chr1:98511564:-	DPYD	16021	chr1:98293752:-	ONLY_REF_SPLICE	YES	0	173	1	0.11	0.2075	0.0104	NEIGHBORS[66951],MIR137HG->MIR137_host_gene,chr1:98453556-98515419:-,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	NCIH2405_LUNG	0.11	1	0.2179	FALSE	0	0	0	1	0	FALSE	ACH-000121
NCIH2405_LUNG	RP11-680G10.1--GSE1	17	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	9	1	0.67	0.1764	0.0104	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2405_LUNG	0.67	1	0.1868	TRUE	465	1949	224	605	0	FALSE	ACH-000121
NCIH2405_LUNG	NRIP1--AF127936.7	15	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1556	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2405_LUNG	1	1	0.1556	FALSE	292	1546	117	613	0	FALSE	ACH-000121
NCIH2405_LUNG	MT-ND6--MT-TE	11	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1141	0.1245	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2405_LUNG	0.96	1	0.2386	FALSE	499	1288	110	792	0	FALSE	ACH-000121
NCIH2405_LUNG	NCOR2--SCARB1	14	0	NCOR2	1282	chr12:125051854:-	SCARB1	76226	chr12:125272003:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1452	0	YOSHIHARA_TCGA_num_samples[BRCA:1|LAML:1|LUAD:2],NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1	NCIH2405_LUNG	1	1	0.1452	TRUE	0	2	0	1	1	TRUE	ACH-000121
NCIH2405_LUNG	MT-ND6--MT-TE	13	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1349	0.0311	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2405_LUNG	0.94	1	0.166	FALSE	499	1288	110	792	0	FALSE	ACH-000121
NCIH2405_LUNG	XXbac-BPG248L24.12--SPP1	10	5	XXbac-BPG248L24.12	1474	chr6:31324897:+	SPP1	5039	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	3	0	0.83	1	0.1037	0.0519	XXbac-BPG248L24.12->chr6:31324424-31325414:+,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	NCIH2405_LUNG	0.83	1	0.1556	TRUE	0	0	0	5	0	TRUE	ACH-000121
NCIH2405_LUNG	MT-ND6--MT-TE	6	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0622	0.1349	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2405_LUNG	0.95	1	0.1971	FALSE	499	1288	110	792	0	FALSE	ACH-000121
NCIH2405_LUNG	RP11-680G10.1--GSE1	9	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.77	0.0934	0.0104	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2405_LUNG	0.77	1	0.1038	TRUE	458	1351	185	561	0	FALSE	ACH-000121
NCIH2405_LUNG	MT-ND6--MT-TE	5	16	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0519	0.166	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2405_LUNG	0.95	1	0.2179	FALSE	499	1288	110	792	0	FALSE	ACH-000121
NCIH2405_LUNG	NRIP1--AF127936.7	8	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.59	1	0.083	0.0207	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2405_LUNG	0.59	1	0.1037	FALSE	125	705	46	456	0	FALSE	ACH-000121
NCIH2405_LUNG	AC105760.2--AGFG1	7	2	AC105760.2	2662	chr2:237992799:-	AGFG1	22592	chr2:228416675:+	ONLY_REF_SPLICE	YES	0	61	1	0.13	0.0726	0.0207	AC105760.2->chr2:237968077-237994460:-,AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+	NCIH2405_LUNG	0.13	1	0.0933	TRUE	0	0	0	1	0	TRUE	ACH-000121
NCIH2405_LUNG	FTL--SPP1	7	0	FTL	1162	chr19:49468719:+	SPP1	10488	chr4:88902828:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0726	0	GTEx&tcga_normals:5/3694=0.14%,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	NCIH2405_LUNG	1	1	0.0726	TRUE	0	0	0	2	0	TRUE	ACH-000121
NCIH2405_LUNG	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0622	0.0311	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2405_LUNG	1	1	0.0933	FALSE	462	80	0	856	0	FALSE	ACH-000121
NCIH2405_LUNG	RP11-123O10.4--GRIP1	6	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0622	0.0207	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2405_LUNG	1	1	0.0829	FALSE	416	2512	207	587	0	FALSE	ACH-000121
NCIH2405_LUNG	CALM3--MT-ND4L	6	0	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0622	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2405_LUNG	1	1	0.0622	FALSE	1	1	0	107	0	FALSE	ACH-000121
NCIH2405_LUNG	MAP2K4--LINC00670	5	2	MAP2K4	11762	chr17:12016677:+	LINC00670	22893	chr17:12453277:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0.0207	MAP2K4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:11924141-12047147:+,mitogen-activated_protein_kinase_kinase_4,LINC00670->chr17:12453099-12546171:+,long_intergenic_non-protein_coding_RNA_670	NCIH2405_LUNG	1	1	0.0726	TRUE	0	0	0	1	0	TRUE	ACH-000121
NCIH2405_LUNG	NRIP1--AF127936.7	4	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.4	1	0.0415	0.0622	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2405_LUNG	0.4	1	0.1037	FALSE	164	806	69	479	0	FALSE	ACH-000121
NCIH2405_LUNG	NCOR2--UBC	5	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0519	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH2405_LUNG	1	1	0.0519	TRUE	145	312	16	51	0	FALSE	ACH-000121
NCIH2405_LUNG	CDC25A--PPP1R2	4	3	CDC25A	9680	chr3:48215774:-	PPP1R2	24106	chr3:195251694:-	ONLY_REF_SPLICE	YES	4	114	0.64	0.06	0.0415	0.0311	CDC25A->Oncogene{Bushman},cell_division_cycle_25A,chr3:48198636-48229892:-,PPP1R2->chr3:195241221-195270209:-,protein_phosphatase_1_regulatory_inhibitor_subunit_2	NCIH2405_LUNG	0.06	0.64	0.0726	TRUE	0	0	0	1	0	TRUE	ACH-000121
NCIH2405_LUNG	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0415	0.0311	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2405_LUNG	0.78	1	0.0726	FALSE	407	2205	196	549	0	FALSE	ACH-000121
NCIH2405_LUNG	CALM3--MT-ATP8	4	1	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	196	0	0.02	1	0.0415	0.0104	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2405_LUNG	0.02	1	0.0519	FALSE	12	0	0	26	0	FALSE	ACH-000121
NCIH2405_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0415	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2405_LUNG	1	1	0.0415	FALSE	499	1288	110	792	0	FALSE	ACH-000121
NCIH2405_LUNG	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0415	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2405_LUNG	1	1	0.0415	FALSE	462	80	0	856	0	FALSE	ACH-000121
NCIH2405_LUNG	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0311	0.0104	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2405_LUNG	0.67	1	0.0415	FALSE	515	4851	409	746	0	FALSE	ACH-000121
NCIH2405_LUNG	RPSAP52--HMGA2	3	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	2	152	0.67	0.03	0.0311	0.0104	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	NCIH2405_LUNG	0.03	0.67	0.0415	FALSE	0	59	0	125	0	FALSE	ACH-000121
NCIH2405_LUNG	TAGLN2--MT-ND5	3	1	TAGLN2	6046	chr1:159888579:-	MT-ND5	10456	chrM:13064:+	INCL_NON_REF_SPLICE	YES	589	1880	0.01	0	0.0311	0.0104	TAGLN2->chr1:159887897-159895522:-,transgelin_2,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH2405_LUNG	0	0.01	0.0415	FALSE	0	0	0	9	0	FALSE	ACH-000121
NCIH2405_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0311	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2405_LUNG	1	1	0.0311	FALSE	499	1288	110	792	0	FALSE	ACH-000121
NCIH2405_LUNG	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0311	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2405_LUNG	1	1	0.0311	FALSE	25	145	6	90	0	FALSE	ACH-000121
NCIH2405_LUNG	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0311	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH2405_LUNG	1	1	0.0311	TRUE	22	156	2	142	0	FALSE	ACH-000121
NCIH2405_LUNG	CPSF6--C9orf3	2	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	101	110	0.03	0.03	0.0207	0.0104	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	NCIH2405_LUNG	0.03	0.03	0.0311	TRUE	53	99	2	44	0	FALSE	ACH-000121
NCIH2405_LUNG	MIR137HG--DPYD	2	1	MIR137HG	3106	chr1:98511564:-	DPYD	14695	chr1:98320911:-	ONLY_REF_SPLICE	YES	0	193	1	0.02	0.0207	0.0104	NEIGHBORS[66951],MIR137HG->MIR137_host_gene,chr1:98453556-98515419:-,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	NCIH2405_LUNG	0.02	1	0.0311	FALSE	0	0	0	1	0	FALSE	ACH-000121
NCIH2405_LUNG	EMC2--EIF3E	2	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	NCIH2405_LUNG	1	1	0.0207	TRUE	0	0	0	12	0	TRUE	ACH-000121
NCIH2405_LUNG	RP11-495P10.2--RP11-403I13.4	2	0	RP11-495P10.2	1210	chr1:147931724:-	RP11-403I13.4	10510	chr1:149239868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx_FI:{Brain=[count:4=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Breast=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Fallopian_Tube=[count:1=pct:16.7]},RP11-495P10.2->chr1:147835127-147931933:-,RP11-403I13.4->chr1:149239531-149265510:+	NCIH2405_LUNG	1	1	0.0207	TRUE	8	0	0	5	0	FALSE	ACH-000121
NCIH2405_LUNG	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH2405_LUNG	1	1	0.0207	FALSE	272	151	14	158	0	FALSE	ACH-000121
NCIH2405_LUNG	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	7	6	0.22	0.25	0.0104	0.0104	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2405_LUNG	0.22	0.25	0.0208	FALSE	7	44	2	41	0	FALSE	ACH-000121
NCIH2405_LUNG	TMED2--EIF2B1	1	1	TMED2	5209	chr12:124074996:+	EIF2B1	12441	chr12:124116993:-	ONLY_REF_SPLICE	YES	568	112	0	0.02	0.0104	0.0104	LOCAL_INVERSION:+:-:[21837],TMED2->chr12:124069078-124083116:+,transmembrane_p24_trafficking_protein_2,EIF2B1->chr12:124104953-124118313:-,eukaryotic_translation_initiation_factor_2B_subunit_alpha	NCIH2405_LUNG	0	0.02	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000121
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	131	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2205	0.2143	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.4348	TRUE	508	994	45	981	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	93	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8665	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8665	TRUE	0	0	0	518	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	81	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.7547	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7547	TRUE	519	3926	326	965	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	175	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	3	0	0.98	1	0.028	1.6304	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	1.6584	FALSE	344	826	44	306	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	42	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3913	0.0652	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4565	FALSE	499	1288	110	792	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	125	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	3	0	0.98	1	0.0466	1.1646	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	1.2112	FALSE	344	826	44	306	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	116	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	12	0	0.91	1	0.0559	1.0807	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	1.1366	FALSE	344	827	44	306	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	124	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0373	1.1553	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.1926	FALSE	344	821	44	306	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	24	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2236	0.0186	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2422	FALSE	462	80	0	856	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.7	23	6	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.7	14808	chr1:149284655:+	INCL_NON_REF_SPLICE	YES	98	0	0.23	1	0.2143	0.0559	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.2702	TRUE	1	0	0	4	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	23	0	ZNF654	1688	chr3:88188941:+	HMGB2	12525	chr4:174253314:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2143	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2143	TRUE	0	0	0	518	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OR51S1--TP53I11	19	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.177	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.177	TRUE	402	216	10	229	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1491	0.0652	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2143	FALSE	499	1288	110	792	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	16	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1491	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1491	TRUE	0	0	0	434	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	12	14	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.1118	0.1304	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.2422	FALSE	499	1288	110	792	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	13	2	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	3027	0	0	1	0.1211	0.0186	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1397	TRUE	0	0	0	100	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	35	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.3261	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3541	FALSE	499	1288	110	792	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	20	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0466	0.1863	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.2329	FALSE	499	1288	110	792	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	10	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0932	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0932	FALSE	416	2512	207	587	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	22	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	4	0	0.87	1	0.0373	0.205	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	0.2423	FALSE	344	826	44	306	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	10	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	11	0	0.61	1	0.0652	0.0932	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	1	0.1584	FALSE	344	827	44	306	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	8	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.0745	0.028	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.1025	FALSE	515	4851	409	746	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	22	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.028	0.205	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.233	FALSE	344	821	44	306	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	22	MT-ND4	1168	chrM:10927:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.028	0.205	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.233	FALSE	344	826	44	306	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	22	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.028	0.205	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.233	FALSE	499	1288	110	792	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	8	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0745	0.0186	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.0931	FALSE	292	1546	117	613	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	12	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0.1118	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1584	FALSE	499	1288	110	792	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	18	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.1677	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1957	FALSE	499	1288	110	792	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.7	6	6	RP11-353N4.6	2221	chr1:149576702:+	RP11-403I13.7	14803	chr1:149284650:+	INCL_NON_REF_SPLICE	YES	110	0	0.1	1	0.0559	0.0559	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.1118	TRUE	1	0	0	4	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSPAN9--TULP3	7	1	TSPAN9	10066	chr12:3389649:+	TULP3	22362	chr12:3029929:+	ONLY_REF_SPLICE	YES	6	23	0.57	0.26	0.0652	0.0093	TSPAN9->chr12:3186521-3395730:+,tetraspanin_9,TULP3->chr12:2986389-3050306:+,tubby_like_protein_3	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.57	0.0745	TRUE	0	0	0	1	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	7	0	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0652	0	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0652	TRUE	0	2	0	11	2	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPRY1--RP11-93L9.1	7	0	SPRY1	2719	chr4:124319668:+	RP11-93L9.1	11872	chr4:124573942:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0652	0	SPRY1->chr4:124317950-124324910:+,sprouty_RTK_signaling_antagonist_1,RP11-93L9.1->chr4:124571422-124851561:+	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0652	TRUE	0	0	0	1	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	6	2	CCDC26	2447	chr8:130587128:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	21	0	0.28	1	0.0559	0.0186	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	1	0.0745	TRUE	0	3	0	7	3	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0559	0.0186	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0745	FALSE	462	80	0	856	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	5	4	CCDC26	4649	chr8:130411777:-	LINC00977	12110	chr8:130235615:-	INCL_NON_REF_SPLICE	YES	35	0	0.2	1	0.0466	0.0373	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.0839	TRUE	0	0	0	4	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0559	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0559	FALSE	183	104	9	328	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0559	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0559	FALSE	499	1288	110	792	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	10	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	11	0	0.54	1	0.028	0.0932	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	1	0.1212	FALSE	344	827	44	306	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PFKL--MT-ND4L	5	2	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1098	0	0.01	1	0.0466	0.0186	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0652	FALSE	0	0	0	33	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	1	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	45	19	0.12	0.24	0.0466	0.0093	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.24	0.0559	TRUE	267	562	48	632	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	5	1	CCDC26	4649	chr8:130411777:-	LINC00977	13259	chr8:130229652:-	INCL_NON_REF_SPLICE	YES	35	2	0.15	0.75	0.0466	0.0093	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.75	0.0559	TRUE	0	0	0	4	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0466	FALSE	13	9	0	364	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0466	FALSE	183	104	9	328	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GYPC--EEF1A1	4	2	GYPC	7413	chr2:127447872:+	EEF1A1	17725	chr6:74228487:-	INCL_NON_REF_SPLICE	YES	788	15069	0.01	0	0.0373	0.0186	GYPC->chr2:127413509-127454246:+,glycophorin_C_(Gerbich_blood_group),EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0559	FALSE	0	0	0	3	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	27	0	0.25	1	0.028	0.0559	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0839	FALSE	164	806	69	479	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKAA1--C7	4	2	PRKAA1	1312	chr5:40798165:-	C7	19649	chr5:40928682:+	ONLY_REF_SPLICE	YES	8	0	0.43	1	0.0373	0.0186	PRKAA1->chr5:40759481-40798476:-,protein_kinase_AMP-activated_catalytic_subunit_alpha_1,C7->chr5:40909354-40983041:+,complement_component_7	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.0559	TRUE	0	0	0	1	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ATP8	4	1	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	168	0	0.03	1	0.0373	0.0093	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0466	FALSE	12	0	0	26	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	H2AFY--MT-CO3	4	1	H2AFY	4872	chr5:134705198:-	MT-CO3	28494	chrM:9412:+	INCL_NON_REF_SPLICE	YES	1898	8513	0	0	0.0373	0.0093	H2AFY->H2A_histone_family_member_Y,chr5:134669590-134735604:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0466	FALSE	0	0	0	1	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	0	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0373	TRUE	267	562	48	632	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0373	FALSE	13	9	0	364	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0373	FALSE	344	821	44	306	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	3	4	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	2295	1	0	0.028	0.0373	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0653	FALSE	26	124	4	93	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	4	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.0373	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0653	FALSE	499	1288	110	792	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	4	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0373	TRUE	62	24	1	171	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.7	3	3	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.7	16052	chr1:149286755:+	ONLY_REF_SPLICE	YES	98	4	0.06	0.6	0.028	0.028	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.6	0.056	TRUE	0	0	0	3	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.028	0.028	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.056	FALSE	467	2173	244	435	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	2	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.0186	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0466	FALSE	462	80	0	856	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.0186	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0466	FALSE	462	80	0	856	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	NO	25	975	0.14	0	0.028	0.0093	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.14	0.0373	FALSE	0	0	0	434	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD74--RPLP1	3	0	CD74	7245	chr5:149781775:-	RPLP1	10962	chr15:69745264:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	GTEx&tcga_normals:3/3694=0.08%,CD74->CD74_molecule,Oncogene{Bushman},chr5:149781200-149792492:-,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.028	FALSE	183	104	9	328	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.028	FALSE	344	821	44	306	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	1	0.5	0.8	0.0186	0.0186	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.8	0.0372	FALSE	16	356	14	466	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--SON	2	0	CHD2	6529	chr15:93444529:+	SON	72219	chr21:34931536:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SON->SON_DNA_binding_protein,chr21:34914924-34949812:+	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	2	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-436K13.2--EBF1	2	0	CTC-436K13.2	1190	chr5:157702908:+	EBF1	13411	chr5:158267118:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	CTC-436K13.2->chr5:157702719-157705821:+,EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CXCR4--FKBP8	2	0	CXCR4	1120	chr2:136875616:-	FKBP8	9615	chr19:18652805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0186	0	CXCR4->C-X-C_motif_chemokine_receptor_4,chr2:136871919-136875735:-,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	10	0	0.33	1	0.0093	0.0373	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.0466	FALSE	125	705	46	456	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0093	0.0373	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.0466	FALSE	407	2205	196	549	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001432.14--TTC3	1	2	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	10	52	0.23	0.05	0.0093	0.0186	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.23	0.0279	TRUE	0	0	0	15	0	TRUE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	4	1	0.43	0.75	0.0093	0.0186	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.75	0.0279	FALSE	0	23	1	67	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	10	1	0.23	0.75	0.0093	0.0186	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.75	0.0279	FALSE	0	48	1	163	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHM--BCL11A	1	1	CHM	2383	chrX:85282495:-	BCL11A	44514	chr2:60679801:-	ONLY_REF_SPLICE	NO	9	119	0.18	0.02	0.0093	0.0093	CHM->CHM,_Rab_escort_protein_1,chrX:85116185-85302566:-,BCL11A->B-cell_CLL/lymphoma_11A,Oncogene{Bushman},chr2:60678302-60780702:-	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.18	0.0186	TRUE	0	0	0	1	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NECAP1--SEC24B	1	1	NECAP1	3122	chr12:8242895:+	SEC24B	15965	chr4:110394160:+	ONLY_REF_SPLICE	NO	14	44	0.12	0.04	0.0093	0.0093	NECAP1->NECAP_endocytosis_associated_1,chr12:8234807-8250367:+,SEC24B->SEC24_homolog_B,_COPII_coat_complex_component,chr4:110354928-110462052:+	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.12	0.0186	TRUE	0	0	0	1	0	FALSE	ACH-000492
MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--UBB	1	1	RPS3	2292	chr11:75111821:+	UBB	14087	chr17:16285216:+	ONLY_REF_SPLICE	NO	3322	166	0	0.01	0.0093	0.0093	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,UBB->chr17:16284112-16286059:+,ubiquitin_B	MUTZ5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0186	FALSE	0	0	0	6	0	FALSE	ACH-000492
SNU466_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	60	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6703	0.2234	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.8937	TRUE	508	994	45	981	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	COL5A1--VIM	55	2	COL5A1	64850	chr9:137734346:+	VIM	71264	chr10:17271331:+	INCL_NON_REF_SPLICE	NO	1007	21	0.05	0.73	0.6145	0.0223	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1,VIM->chr10:17270258-17279592:+,vimentin	SNU466_CENTRAL_NERVOUS_SYSTEM	0.05	0.73	0.6368	TRUE	0	0	0	1	0	TRUE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	PEPD--LLNLF-65H9.1	45	13	PEPD	12550	chr19:33953901:-	LLNLF-65H9.1	29716	chr19:28474319:+	ONLY_REF_SPLICE	YES	64	0	0.48	1	0.5028	0.1452	PEPD->chr19:33877856-34012700:-,peptidase_D,LLNLF-65H9.1->chr19:28284396-28475892:+	SNU466_CENTRAL_NERVOUS_SYSTEM	0.48	1	0.648	TRUE	0	0	0	1	0	TRUE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	31	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	135	1	0.21	0.97	0.3463	0.0447	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU466_CENTRAL_NERVOUS_SYSTEM	0.21	0.97	0.391	TRUE	519	3926	326	965	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	24	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2681	0.0447	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.3128	FALSE	462	80	0	856	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	19	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2123	0.0559	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.2682	FALSE	499	1288	110	792	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	14	8	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	9	83	0.71	0.21	0.1564	0.0894	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SNU466_CENTRAL_NERVOUS_SYSTEM	0.21	0.71	0.2458	FALSE	49	120	16	70	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	11	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1229	0.1899	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU466_CENTRAL_NERVOUS_SYSTEM	0.97	1	0.3128	FALSE	499	1288	110	792	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	15	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1676	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.1676	TRUE	402	216	10	229	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	10	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	38	22	0.3	0.42	0.1117	0.067	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU466_CENTRAL_NERVOUS_SYSTEM	0.3	0.42	0.1787	TRUE	267	562	48	632	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	11	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.1229	0.0112	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU466_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.1341	TRUE	477	1352	189	275	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	7	15	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0782	0.1676	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.2458	FALSE	499	1288	110	792	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	CTSD--ACTG1	8	1	CTSD	4382	chr11:1780784:-	ACTG1	17252	chr17:79477746:-	INCL_NON_REF_SPLICE	YES	6895	5771	0	0	0.0894	0.0112	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.03%,CTSD->cathepsin_D,chr11:1773982-1785222:-,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SNU466_CENTRAL_NERVOUS_SYSTEM	0	0	0.1006	TRUE	0	0	0	2	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	6	8	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	7	83	0.67	0.14	0.067	0.0894	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SNU466_CENTRAL_NERVOUS_SYSTEM	0.14	0.67	0.1564	FALSE	141	264	50	91	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	PDIA4--GAPDH	7	0	PDIA4	6407	chr7:148709365:-	GAPDH	18610	chr12:6646518:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0782	0	PDIA4->chr7:148700154-148725733:-,protein_disulfide_isomerase_family_A_member_4,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.0782	TRUE	0	0	0	2	0	TRUE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	SAMD5--SASH1	6	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.067	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.067	TRUE	53	396	64	110	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0.0782	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.1229	FALSE	499	1288	110	792	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	4	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	38	23	0.17	0.26	0.0447	0.0447	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU466_CENTRAL_NERVOUS_SYSTEM	0.17	0.26	0.0894	TRUE	267	562	48	632	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	IGFBP7--MT-ND4L	5	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0559	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.0559	FALSE	1	0	0	30	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.0447	FALSE	292	1546	117	613	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	VIM--PPIA	4	0	VIM	2122	chr10:17271379:+	PPIA	12215	chr7:44836289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	VIM->chr10:17270258-17279592:+,vimentin,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.0447	TRUE	0	0	0	6	0	TRUE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	VIM-AS1--FSCN1	4	0	VIM-AS1	1555	chr10:17271430:-	FSCN1	9803	chr7:5632447:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.0447	TRUE	0	0	0	3	0	TRUE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	3	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0335	0.0335	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.067	TRUE	458	1351	185	561	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	3	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	NO	0	13	1	0.32	0.0335	0.0335	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU466_CENTRAL_NERVOUS_SYSTEM	0.32	1	0.067	TRUE	465	1949	224	605	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	CTD-2152M20.2--GOLPH3	3	1	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	139	1	0.03	0.0335	0.0112	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	SNU466_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0447	TRUE	10	26	2	24	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0.0112	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.0335	FALSE	407	2205	196	549	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	DTD1--DSTN	2	0	DTD1	4657	chr20:18608877:+	DSTN	15667	chr20:17581383:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	DTD1->D-tyrosyl-tRNA_deacylase_1,chr20:18568537-18744561:+,DSTN->chr20:17550508-17590564:+,destrin,_actin_depolymerizing_factor	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.0223	FALSE	164	806	69	479	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.0223	FALSE	125	705	46	456	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	CRIM1--FEZ2	1	2	CRIM1	21418	chr2:36764689:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	600	198	0	0.01	0.0112	0.0223	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	SNU466_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0335	FALSE	1	4	0	11	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	1	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	NO	0	4	1	0.43	0.0112	0.0223	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SNU466_CENTRAL_NERVOUS_SYSTEM	0.43	1	0.0335	TRUE	254	575	65	124	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	RP4-565E6.1--HYDIN	1	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0112	0.0223	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.0335	TRUE	456	1387	91	133	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	TLN2--TPM1	1	2	TLN2	1160	chr15:62682884:+	TPM1	85052	chr15:63349184:+	ONLY_REF_SPLICE	NO	30	6804	0.09	0	0.0112	0.0223	GTEx_FI:{Heart=[count:2=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},TLN2->chr15:62682725-63136830:+,talin_2,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	SNU466_CENTRAL_NERVOUS_SYSTEM	0	0.09	0.0335	FALSE	2	1	0	6	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	TLN2--TPM1	1	2	TLN2	55431	chr15:63073440:+	TPM1	85052	chr15:63349184:+	ONLY_REF_SPLICE	YES	163	6804	0.02	0	0.0112	0.0223	GTEx_FI:{Heart=[count:2=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},TLN2->chr15:62682725-63136830:+,talin_2,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	SNU466_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0335	FALSE	0	0	0	1	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	AP4S1--STRN3	1	1	AP4S1	1682	chr14:31494993:+	STRN3	20124	chr14:31425448:-	ONLY_REF_SPLICE	NO	17	28	0.11	0.07	0.0112	0.0112	NEIGHBORS_OVERLAP:+:-:[1295],AP4S1->adaptor_related_protein_complex_4_sigma_1_subunit,chr14:31494312-31562818:+,STRN3->chr14:31363005-31495607:-,striatin_3	SNU466_CENTRAL_NERVOUS_SYSTEM	0.07	0.11	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	CD151--CD59	1	1	CD151	4563	chr11:836405:+	CD59	14700	chr11:33744013:-	ONLY_REF_SPLICE	YES	3710	77	0	0.03	0.0112	0.0112	HGNC_GENEFAM,CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+,CD59->CD59_molecule,chr11:33719807-33757991:-	SNU466_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	PPP2R3C--PSMA3	1	1	PPP2R3C	6948	chr14:35576510:-	PSMA3	27542	chr14:58737136:+	ONLY_REF_SPLICE	YES	51	195	0.04	0.01	0.0112	0.0112	PPP2R3C->chr14:35554673-35591723:-,protein_phosphatase_2_regulatory_subunit_B'',_gamma,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	SNU466_CENTRAL_NERVOUS_SYSTEM	0.01	0.04	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	PPP2R4--WRAP73	1	1	PPP2R4	16381	chr9:131904831:+	WRAP73	25236	chr1:3564124:-	ONLY_REF_SPLICE	YES	265	56	0.01	0.03	0.0112	0.0112	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,WRAP73->WD_repeat_containing,_antisense_to_TP73,chr1:3547331-3569325:-	SNU466_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	PRSS23--SERPINE2	1	1	PRSS23	8412	chr11:86534635:+	SERPINE2	33733	chr2:224849667:-	ONLY_REF_SPLICE	YES	49	12753	0.04	0	0.0112	0.0112	PRSS23->chr11:86502101-86663952:+,protease,_serine_23,SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2	SNU466_CENTRAL_NERVOUS_SYSTEM	0	0.04	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	PTPRS--IFITM10	1	1	PTPRS	16790	chr19:5238930:-	IFITM10	44608	chr11:1769349:-	ONLY_REF_SPLICE	NO	117	1332	0.02	0	0.0112	0.0112	PTPRS->chr19:5158506-5340814:-,protein_tyrosine_phosphatase,_receptor_type_S,IFITM10->chr11:1753640-1771821:-,interferon_induced_transmembrane_protein_10	SNU466_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000289
SNU466_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0112	0.0112	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU466_CENTRAL_NERVOUS_SYSTEM	1	1	0.0224	FALSE	515	4851	409	746	0	FALSE	ACH-000289
EFM192A_BREAST	MED13--EYA2	217	58	MED13	9824	chr17:60106902:-	EYA2	44114	chr20:45618640:+	ONLY_REF_SPLICE	YES	58	1	0.83	1	1.8123	0.4844	MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	EFM192A_BREAST	0.83	1	2.2967	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	TBK1--RP11-435B5.7	145	52	TBK1	14940	chr12:64883899:+	RP11-435B5.7	24596	chr1:143529235:-	ONLY_REF_SPLICE	YES	69	0	0.74	1	1.211	0.4343	TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,RP11-435B5.7->chr1:143527555-143533272:-	EFM192A_BREAST	0.74	1	1.6453	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TN	149	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2444	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFM192A_BREAST	1	1	1.2444	FALSE	369	2501	205	193	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	114	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	3	0	0.98	1	0.9521	0.0501	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	0.98	1	1.0022	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	TIMM23B--LINC00843	112	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9354	0.1169	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EFM192A_BREAST	1	1	1.0523	TRUE	508	994	45	981	0	FALSE	ACH-000117
EFM192A_BREAST	PREX1--ARFGEF2	104	31	PREX1	38736	chr20:47244399:-	ARFGEF2	68758	chr20:47621607:+	ONLY_REF_SPLICE	YES	296	78	0.31	0.63	0.8686	0.2589	{Klijn_CCL:Breast=1},LOCAL_INVERSION:-:+:[94007],PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1,ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+	EFM192A_BREAST	0.31	0.63	1.1275	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	PREX1--HILS1	87	20	PREX1	3437	chr20:47361562:-	HILS1	46494	chr17:48249538:-	ONLY_REF_SPLICE	YES	233	2	0.31	0.98	0.7266	0.167	PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1,HILS1->chr17:48248789-48258539:-,histone_linker_H1_domain,_spermatid-specific_1_(pseudogene)	EFM192A_BREAST	0.31	0.98	0.8936	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	HOXB6--CISD3	69	41	HOXB6	3803	chr17:46675098:-	CISD3	10788	chr17:36887013:+	ONLY_REF_SPLICE	YES	1	316	0.99	0.26	0.5763	0.3424	HOXB6->chr17:46671639-46682354:-,homeobox_B6,CISD3->CDGSH_iron_sulfur_domain_3,chr17:36886488-36891297:+	EFM192A_BREAST	0.26	0.99	0.9187	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	DEPDC1B--HSD17B12	74	14	DEPDC1B	1145	chr5:59995873:-	HSD17B12	40936	chr11:43852526:+	ONLY_REF_SPLICE	YES	2	93	0.98	0.49	0.618	0.1169	{Klijn_CCL:Breast=1},DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12	EFM192A_BREAST	0.49	0.98	0.7349	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	7	236	MT-ND4	1180	chrM:10939:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	33	0	0.88	1	0.0585	1.971	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.88	1	2.0295	FALSE	344	826	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TC	62	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5178	0.0835	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFM192A_BREAST	1	1	0.6013	FALSE	462	80	0	856	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	4	239	MT-ND4	1724	chrM:11483:+	MT-ND4L	5482	chrM:10573:+	INCL_NON_REF_SPLICE	YES	2979	2	0.08	0.99	0.0334	1.9961	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.08	0.99	2.0295	FALSE	344	827	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	5	233	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	24	0	0.91	1	0.0418	1.946	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.91	1	1.9878	FALSE	344	826	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	TMEM135--GRM5-AS1	60	13	TMEM135	11402	chr11:87006865:+	GRM5-AS1	31079	chr11:88244919:+	ONLY_REF_SPLICE	YES	40	0	0.65	1	0.5011	0.1086	TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,GRM5-AS1->GRM5_antisense_RNA_1,chr11:88237744-88257222:+	EFM192A_BREAST	0.65	1	0.6097	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	4	235	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	32	0	0.88	1	0.0334	1.9627	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.88	1	1.9961	FALSE	344	826	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	4	234	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	25	2	0.9	0.99	0.0334	1.9543	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.9	0.99	1.9877	FALSE	344	826	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	3	237	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	24	0	0.91	1	0.0251	1.9794	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.91	1	2.0045	FALSE	344	827	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	3	233	MT-ND4	1386	chrM:11145:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	98	0	0.71	1	0.0251	1.946	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.71	1	1.9711	FALSE	344	827	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	TIMM23--RP11-464F9.1	57	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	163	3	0.27	0.95	0.476	0.0251	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EFM192A_BREAST	0.27	0.95	0.5011	TRUE	519	3926	326	965	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	7	191	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	14	0	0.93	1	0.0585	1.5952	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.93	1	1.6537	FALSE	344	826	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	TBK1--RP11-435B5.7	42	39	TBK1	14940	chr12:64883899:+	RP11-435B5.7	25634	chr1:143528126:-	ONLY_REF_SPLICE	YES	69	0	0.54	1	0.3508	0.3257	TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,RP11-435B5.7->chr1:143527555-143533272:-	EFM192A_BREAST	0.54	1	0.6765	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	9	163	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	11	0	0.94	1	0.0752	1.3613	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.94	1	1.4365	FALSE	344	821	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	7	157	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	17	1	0.91	0.99	0.0585	1.3112	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.91	0.99	1.3697	FALSE	344	826	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	43	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.3591	0.0668	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	0.94	1	0.4259	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	DEPDC1B--HSD17B12	42	9	DEPDC1B	1145	chr5:59995873:-	HSD17B12	43390	chr11:43859867:+	ONLY_REF_SPLICE	YES	2	76	0.96	0.4	0.3508	0.0752	{Klijn_CCL:Breast=1},DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12	EFM192A_BREAST	0.4	0.96	0.426	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	4	151	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	18	1	0.9	0.99	0.0334	1.2611	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.9	0.99	1.2945	FALSE	344	826	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	3	147	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	38	1	0.8	0.99	0.0251	1.2277	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.8	0.99	1.2528	FALSE	344	827	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	ZNF654--HMGB2	37	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.309	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	EFM192A_BREAST	1	1	0.309	TRUE	0	0	0	518	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	26	32	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6918	1	0.01	0.98	0.2171	0.2673	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.01	0.98	0.4844	FALSE	344	827	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	20	52	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	12301	1	0.01	0.99	0.167	0.4343	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.01	0.99	0.6013	FALSE	328	800	43	304	0	FALSE	ACH-000117
EFM192A_BREAST	OR51S1--TP53I11	33	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2756	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	EFM192A_BREAST	1	1	0.2756	TRUE	402	216	10	229	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	3	114	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	28	1	0.81	0.99	0.0251	0.9521	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.81	0.99	0.9772	FALSE	344	826	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TN	14	68	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1169	0.5679	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFM192A_BREAST	1	1	0.6848	FALSE	369	2501	205	193	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	24	23	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.2004	0.1921	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	0.92	1	0.3925	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	RP11-123O10.4--GRIP1	27	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2255	0.0334	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	EFM192A_BREAST	1	1	0.2589	FALSE	416	2512	207	587	0	FALSE	ACH-000117
EFM192A_BREAST	WIPF2--SGCA	26	4	WIPF2	1189	chr17:38375744:+	SGCA	22724	chr17:48245308:+	ONLY_REF_SPLICE	YES	39	0	0.43	1	0.2171	0.0334	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,SGCA->chr17:48241575-48253292:+,sarcoglycan_alpha	EFM192A_BREAST	0.43	1	0.2505	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	ERBB2--MT-ND4L	19	30	ERBB2	24987	chr17:37884137:+	MT-ND4L	30171	chrM:10471:+	INCL_NON_REF_SPLICE	YES	3338	0	0.01	1	0.1587	0.2506	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.01	1	0.4093	FALSE	0	1	0	4	0	FALSE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TN	17	38	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.142	0.3174	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFM192A_BREAST	1	1	0.4594	FALSE	369	2501	205	193	0	FALSE	ACH-000117
EFM192A_BREAST	MATN2--TMEM74	23	8	MATN2	10767	chr8:98991236:+	TMEM74	34824	chr8:109621055:-	ONLY_REF_SPLICE	YES	16	0	0.66	1	0.1921	0.0668	MATN2->chr8:98881068-99048944:+,matrilin_2,TMEM74->Oncogene{Bushman},chr8:109619079-109799844:-,transmembrane_protein_74	EFM192A_BREAST	0.66	1	0.2589	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TN	21	14	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1754	0.1169	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFM192A_BREAST	1	1	0.2923	FALSE	369	2501	205	193	0	FALSE	ACH-000117
EFM192A_BREAST	TESK2--PDZK1IP1	21	14	TESK2	3779	chr1:45887397:-	PDZK1IP1	18625	chr1:47653099:-	ONLY_REF_SPLICE	YES	0	49	1	0.42	0.1754	0.1169	{Klijn_CCL:Breast=1},TESK2->chr1:45809555-45956872:-,testis-specific_kinase_2,PDZK1IP1->PDZK1_interacting_protein_1,chr1:47649265-47656716:-	EFM192A_BREAST	0.42	1	0.2923	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	RP11-96H19.1--RP11-446N19.1	22	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	12	0	0.71	1	0.1837	0.0668	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EFM192A_BREAST	0.71	1	0.2505	FALSE	515	4851	409	746	0	FALSE	ACH-000117
EFM192A_BREAST	NIPA2--POLA1	23	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1921	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	EFM192A_BREAST	1	1	0.1921	TRUE	46	1352	75	139	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	15	31	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	23	1	0.67	0.98	0.1253	0.2589	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.67	0.98	0.3842	FALSE	344	826	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	TESK2--PDZK1IP1	21	7	TESK2	3779	chr1:45887397:-	PDZK1IP1	19981	chr1:47650769:-	ONLY_REF_SPLICE	YES	0	30	1	0.48	0.1754	0.0585	{Klijn_CCL:Breast=1},TESK2->chr1:45809555-45956872:-,testis-specific_kinase_2,PDZK1IP1->PDZK1_interacting_protein_1,chr1:47649265-47656716:-	EFM192A_BREAST	0.48	1	0.2339	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	13	32	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.1086	0.2673	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	0.94	1	0.3759	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TN	12	35	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1002	0.2923	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFM192A_BREAST	1	1	0.3925	FALSE	369	2501	205	193	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	11	38	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.0919	0.3174	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	0.94	1	0.4093	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	ARFGEF2--KRT222	19	5	ARFGEF2	25184	chr20:47621758:+	KRT222	45697	chr17:38818296:-	ONLY_REF_SPLICE	YES	72	2	0.25	0.92	0.1587	0.0418	ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,KRT222->chr17:38785049-38821393:-,chr17:38810917-38821433:-,keratin_222	EFM192A_BREAST	0.25	0.92	0.2005	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	INTS4--NUP160	20	1	INTS4	25113	chr11:77612467:-	NUP160	38822	chr11:47857361:-	ONLY_REF_SPLICE	YES	16	38	0.57	0.36	0.167	0.0084	INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,NUP160->chr11:47799639-47870107:-,nucleoporin_160kDa	EFM192A_BREAST	0.36	0.57	0.1754	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	NPM1P24--SET	20	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.167	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	EFM192A_BREAST	1	1	0.167	TRUE	0	0	0	434	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	6	52	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	388	1	0.13	0.98	0.0501	0.4343	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.13	0.98	0.4844	FALSE	344	827	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	6	51	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	28	1	0.67	0.98	0.0501	0.4259	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.67	0.98	0.476	FALSE	344	826	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	3	63	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	11	1	0.86	0.99	0.0251	0.5262	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.86	0.99	0.5513	FALSE	344	821	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TC	16	11	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1336	0.0919	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFM192A_BREAST	1	1	0.2255	FALSE	462	80	0	856	0	FALSE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TN	12	26	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1002	0.2171	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFM192A_BREAST	1	1	0.3173	FALSE	369	2501	205	193	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	3	61	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	13	0	0.83	1	0.0251	0.5095	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	0.83	1	0.5346	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	5	52	MT-ND4	1471	chrM:11230:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	194	1	0.23	0.98	0.0418	0.4343	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.23	0.98	0.4761	FALSE	344	827	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	PCGF2--HOXB-AS3	16	8	PCGF2	8271	chr17:36892343:-	HOXB-AS3	18645	chr17:46677809:+	ONLY_REF_SPLICE	YES	963	0	0.02	1	0.1336	0.0668	PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2,HOXB-AS3->HOXB_cluster_antisense_RNA_3,chr17:46626992-46683776:+	EFM192A_BREAST	0.02	1	0.2004	TRUE	0	0	0	1	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	4	51	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	33	1	0.62	0.98	0.0334	0.4259	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.62	0.98	0.4593	FALSE	344	826	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	4	51	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	32	1	0.63	0.98	0.0334	0.4259	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.63	0.98	0.4593	FALSE	344	826	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	9	30	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	7	1	0.85	0.97	0.0752	0.2506	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.85	0.97	0.3258	FALSE	344	821	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	8	31	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	24	1	0.62	0.97	0.0668	0.2589	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.62	0.97	0.3257	FALSE	344	826	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	9	25	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	31	0	0.52	1	0.0752	0.2088	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.52	1	0.284	FALSE	344	826	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TN	3	47	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0.3925	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFM192A_BREAST	1	1	0.4176	FALSE	369	2501	205	193	0	FALSE	ACH-000117
EFM192A_BREAST	HOXB6--CISD3	4	42	HOXB6	3803	chr17:46675098:-	CISD3	10753	chr17:36886978:+	INCL_NON_REF_SPLICE	YES	1	342	0.98	0.12	0.0334	0.3508	HOXB6->chr17:46671639-46682354:-,homeobox_B6,CISD3->CDGSH_iron_sulfur_domain_3,chr17:36886488-36891297:+	EFM192A_BREAST	0.12	0.98	0.3842	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TN	5	38	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0.3174	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFM192A_BREAST	1	1	0.3592	FALSE	369	2501	205	193	0	FALSE	ACH-000117
EFM192A_BREAST	PCGF2--HOXB-AS3	11	14	PCGF2	8869	chr17:36891745:-	HOXB-AS3	18645	chr17:46677809:+	ONLY_REF_SPLICE	YES	850	0	0.03	1	0.0919	0.1169	PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2,HOXB-AS3->HOXB_cluster_antisense_RNA_3,chr17:46626992-46683776:+	EFM192A_BREAST	0.03	1	0.2088	TRUE	0	0	0	1	0	FALSE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TC	14	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1169	0.0084	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFM192A_BREAST	1	1	0.1253	FALSE	462	80	0	856	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	6	32	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	464	1	0.08	0.97	0.0501	0.2673	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.08	0.97	0.3174	FALSE	344	827	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	6	31	MT-ND4	1303	chrM:11062:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	35	1	0.51	0.97	0.0501	0.2589	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.51	0.97	0.309	FALSE	344	827	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	STK17A--CTD-2560E9.3	13	2	STK17A	4050	chr7:43647999:+	CTD-2560E9.3	14854	chr11:45237754:-	ONLY_REF_SPLICE	YES	39	0	0.28	1	0.1086	0.0167	STK17A->chr7:43622357-43666385:+,serine/threonine_kinase_17a,CTD-2560E9.3->chr11:45237366-45256843:-	EFM192A_BREAST	0.28	1	0.1253	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	5	32	MT-ND4	2029	chrM:11788:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	13523	1	0	0.97	0.0418	0.2673	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0	0.97	0.3091	FALSE	344	826	44	305	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	5	32	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	4510	1	0.01	0.97	0.0418	0.2673	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.01	0.97	0.3091	FALSE	344	827	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	NME1-NME2--MT-ND1	13	0	NME1-NME2	7295	chr17:49243859:+	MT-ND1	15072	chrM:3310:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1086	0	NME1-NME2->NME1-NME2_readthrough,chr17:49230920-49249108:+,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	EFM192A_BREAST	1	1	0.1086	FALSE	0	0	0	2	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	5	31	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	30	1	0.55	0.97	0.0418	0.2589	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.55	0.97	0.3007	FALSE	344	827	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	5	31	MT-ND4	1205	chrM:10964:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	27	1	0.57	0.97	0.0418	0.2589	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.57	0.97	0.3007	FALSE	344	826	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	3	39	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.0251	0.3257	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	0.91	1	0.3508	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	3	38	MT-ND6	1153	chrM:14521:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	29	0	0.59	1	0.0251	0.3174	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	0.59	1	0.3425	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	ERBB2--MT-ND4L	6	24	ERBB2	24596	chr17:37883746:+	MT-ND4L	30171	chrM:10471:+	INCL_NON_REF_SPLICE	YES	3434	0	0.01	1	0.0501	0.2004	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.01	1	0.2505	FALSE	0	1	0	4	0	FALSE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TN	12	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1002	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFM192A_BREAST	1	1	0.1002	FALSE	369	2501	205	193	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	3	35	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.0251	0.2923	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	0.9	1	0.3174	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	ERBB2--MT-ND4L	11	1	ERBB2	16098	chr17:37872098:+	MT-ND4L	30326	chrM:10626:+	INCL_NON_REF_SPLICE	YES	5112	3749	0	0	0.0919	0.0084	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0	0	0.1003	FALSE	0	0	0	3	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	8	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	30	0	0.41	1	0.0668	0.1086	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.41	1	0.1754	FALSE	344	827	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--COX7C	11	0	MT-ND6	1261	chrM:14413:-	COX7C	4608	chr5:85913803:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0919	0	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COX7C->chr5:85913721-85916779:+,cytochrome_c_oxidase_subunit_7C	EFM192A_BREAST	1	1	0.0919	FALSE	0	0	0	7	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	11	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0919	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	1	1	0.0919	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TN	11	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0919	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFM192A_BREAST	1	1	0.0919	FALSE	369	2501	205	193	0	FALSE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TN	11	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0919	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFM192A_BREAST	1	1	0.0919	FALSE	369	2501	205	193	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	3	31	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	28	1	0.55	0.97	0.0251	0.2589	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.55	0.97	0.284	FALSE	344	827	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	5	23	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	5	0	0.85	1	0.0418	0.1921	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	0.85	1	0.2339	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	FXYD3--MT-ND5	10	2	FXYD3	8292	chr19:35614212:+	MT-ND5	13036	chrM:13064:+	INCL_NON_REF_SPLICE	YES	2127	3678	0.01	0	0.0835	0.0167	FXYD3->FXYD_domain_containing_ion_transport_regulator_3,chr19:35606732-35615228:+,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	EFM192A_BREAST	0	0.01	0.1002	FALSE	0	0	0	3	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND5--MT-ND6	9	6	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0752	0.0501	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	EFM192A_BREAST	1	1	0.1253	FALSE	26	124	4	93	0	FALSE	ACH-000117
EFM192A_BREAST	ERBB2--MT-CO3	10	1	ERBB2	22794	chr17:37881944:+	MT-CO3	30569	chrM:9606:+	INCL_NON_REF_SPLICE	NO	4579	11808	0	0	0.0835	0.0084	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	EFM192A_BREAST	0	0	0.0919	FALSE	0	0	0	1	0	FALSE	ACH-000117
EFM192A_BREAST	ERBB2--MT-ND4L	5	21	ERBB2	24051	chr17:37883201:+	MT-ND4L	30171	chrM:10471:+	INCL_NON_REF_SPLICE	YES	4005	0	0.01	1	0.0418	0.1754	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.01	1	0.2172	FALSE	0	0	0	4	0	FALSE	ACH-000117
EFM192A_BREAST	ERBB2--MT-CO3	10	0	ERBB2	6082	chr17:37856418:+	MT-CO3	30528	chrM:9565:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0835	0	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	EFM192A_BREAST	1	1	0.0835	FALSE	0	0	0	1	0	FALSE	ACH-000117
EFM192A_BREAST	MOB3B--TEK	9	4	MOB3B	2843	chr9:27455131:-	TEK	20037	chr9:27172614:+	ONLY_REF_SPLICE	YES	9	0	0.59	1	0.0752	0.0334	{Klijn_CCL:Breast=1},LOCAL_INVERSION:-:+:[95034],MOB3B->MOB_kinase_activator_3B,chr9:27325207-27529779:-,TEK->Oncogene{Bushman},TEK_receptor_tyrosine_kinase,chr9:27109139-27230173:+	EFM192A_BREAST	0.59	1	0.1086	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	3	28	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	5	0	0.86	1	0.0251	0.2338	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	0.86	1	0.2589	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	9	1	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	5	1	0.67	0.91	0.0752	0.0084	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.67	0.91	0.0836	FALSE	344	821	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	9	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0752	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	1	1	0.0752	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	7	6	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.93	0.0585	0.0501	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.93	1	0.1086	FALSE	344	821	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	ATP6V0C--MT-CO2	8	1	ATP6V0C	2886	chr16:2569357:+	MT-CO2	6967	chrM:7804:+	INCL_NON_REF_SPLICE	YES	530	13299	0.02	0	0.0668	0.0084	ATP6V0C->ATPase_H+_transporting_V0_subunit_c,chr16:2563871-2570219:+,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	EFM192A_BREAST	0	0.02	0.0752	FALSE	0	0	0	9	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	5	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	32	0	0.36	1	0.0418	0.1086	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.36	1	0.1504	FALSE	344	826	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	SNRPD1--CABLES1	8	0	SNRPD1	1177	chr18:19192404:+	CABLES1	14227	chr18:20768802:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0668	0	SNRPD1->chr18:19192228-19210417:+,small_nuclear_ribonucleoprotein_D1_polypeptide,CABLES1->Cdk5_and_Abl_enzyme_substrate_1,chr18:20714528-20840431:+	EFM192A_BREAST	1	1	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	ARFGEF2--APCDD1L-AS1	7	2	ARFGEF2	30051	chr20:47632952:+	APCDD1L-AS1	55025	chr20:57193796:+	ONLY_REF_SPLICE	YES	94	0	0.09	1	0.0585	0.0167	ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	EFM192A_BREAST	0.09	1	0.0752	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	5	9	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	4	0	0.78	1	0.0418	0.0752	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	0.78	1	0.117	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TC	4	13	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0.1086	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFM192A_BREAST	1	1	0.142	FALSE	462	80	0	856	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	7	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0585	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	1	1	0.0585	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TC	3	16	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0.1336	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFM192A_BREAST	1	1	0.1587	FALSE	462	80	0	856	0	FALSE	ACH-000117
EFM192A_BREAST	BCAS1--FER1L6-AS2	6	2	BCAS1	14147	chr20:52569971:-	FER1L6-AS2	26447	chr8:125073033:-	ONLY_REF_SPLICE	YES	436	0	0.02	1	0.0501	0.0167	BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-,FER1L6-AS2->FER1L6_antisense_RNA_2,chr8:125058314-125183763:-	EFM192A_BREAST	0.02	1	0.0668	TRUE	0	0	0	1	0	FALSE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFM192A_BREAST	1	1	0.0501	FALSE	369	2501	205	193	0	FALSE	ACH-000117
EFM192A_BREAST	ERBB2--MT-CO3	3	11	ERBB2	24633	chr17:37883783:+	MT-CO3	30175	chrM:9212:+	INCL_NON_REF_SPLICE	YES	3925	0	0	1	0.0251	0.0919	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	EFM192A_BREAST	0	1	0.117	FALSE	0	0	0	1	0	FALSE	ACH-000117
EFM192A_BREAST	RP11-123O10.4--GRIP1	5	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0.0167	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	EFM192A_BREAST	1	1	0.0585	FALSE	93	270	15	244	0	FALSE	ACH-000117
EFM192A_BREAST	TESK2--PDZK1IP1	2	14	TESK2	3779	chr1:45887397:-	PDZK1IP1	17478	chr1:47655684:-	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.0167	0.1169	{Klijn_CCL:Breast=1},TESK2->chr1:45809555-45956872:-,testis-specific_kinase_2,PDZK1IP1->PDZK1_interacting_protein_1,chr1:47649265-47656716:-	EFM192A_BREAST	0.94	1	0.1336	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	HELZ2--XPOT	4	5	HELZ2	16015	chr20:62190578:-	XPOT	42684	chr12:64841885:+	INCL_NON_REF_SPLICE	YES	2	168	0.82	0.05	0.0334	0.0418	HELZ2->chr20:62189439-62205592:-,helicase_with_zinc_finger_2,XPOT->chr12:64798130-64844907:+,exportin_for_tRNA	EFM192A_BREAST	0.05	0.82	0.0752	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	RP11-96H19.1--RP11-446N19.1	3	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	12	0	0.5	1	0.0251	0.0752	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EFM192A_BREAST	0.5	1	0.1003	FALSE	407	2205	196	549	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	5	0	MT-ND4	1019	chrM:10778:+	MT-ND4L	5617	chrM:10708:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	1	1	0.0418	FALSE	344	821	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	1	1	0.0418	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TN	5	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFM192A_BREAST	1	1	0.0418	FALSE	369	2501	205	193	0	FALSE	ACH-000117
EFM192A_BREAST	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	EFM192A_BREAST	1	1	0.0418	TRUE	22	156	2	142	0	FALSE	ACH-000117
EFM192A_BREAST	SLC44A2--RPL19	5	0	SLC44A2	9133	chr19:10747032:+	RPL19	20041	chr17:37359260:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0	SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2,RPL19->chr17:37356536-37360980:+,ribosomal_protein_L19	EFM192A_BREAST	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	ERBB2--MT-ND4L	3	7	ERBB2	15556	chr17:37871556:+	MT-ND4L	30171	chrM:10471:+	INCL_NON_REF_SPLICE	YES	4557	0	0	1	0.0251	0.0585	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0	1	0.0836	FALSE	0	0	0	3	0	FALSE	ACH-000117
EFM192A_BREAST	HELZ2--XPOT	4	3	HELZ2	15958	chr20:62190635:-	XPOT	42684	chr12:64841885:+	INCL_NON_REF_SPLICE	YES	4	168	0.64	0.04	0.0334	0.0251	HELZ2->chr20:62189439-62205592:-,helicase_with_zinc_finger_2,XPOT->chr12:64798130-64844907:+,exportin_for_tRNA	EFM192A_BREAST	0.04	0.64	0.0585	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MT-ND5--MT-ND6	4	3	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	2	4334	0.78	0	0.0334	0.0251	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	EFM192A_BREAST	0	0.78	0.0585	FALSE	26	124	4	93	0	FALSE	ACH-000117
EFM192A_BREAST	ERBB2--MT-CO3	4	2	ERBB2	27006	chr17:37886516:+	MT-CO3	30528	chrM:9565:+	INCL_NON_REF_SPLICE	YES	6	12412	0.5	0	0.0334	0.0167	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	EFM192A_BREAST	0	0.5	0.0501	FALSE	0	0	0	1	0	FALSE	ACH-000117
EFM192A_BREAST	PKP2--MYC	4	2	PKP2	1332	chr12:33049443:-	MYC	24442	chr8:128750497:+	ONLY_REF_SPLICE	YES	13	169	0.32	0.03	0.0334	0.0167	PKP2->chr12:32943679-33049774:-,plakophilin_2,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	EFM192A_BREAST	0.03	0.32	0.0501	TRUE	0	0	0	1	0	FALSE	ACH-000117
EFM192A_BREAST	RP11-114H23.1--RP11-114H23.2	4	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0334	0.0167	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	EFM192A_BREAST	0.86	1	0.0501	FALSE	81	155	12	160	0	FALSE	ACH-000117
EFM192A_BREAST	ACTB--FAM84B	4	1	ACTB	7164	chr7:5567484:-	FAM84B	13024	chr8:127568481:-	INCL_NON_REF_SPLICE	YES	3298	928	0	0.01	0.0334	0.0084	ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,FAM84B->chr8:127564687-127570638:-,family_with_sequence_similarity_84_member_B	EFM192A_BREAST	0	0.01	0.0418	FALSE	0	0	0	1	0	FALSE	ACH-000117
EFM192A_BREAST	DCP2--CAMK4	4	0	DCP2	12013	chr5:112349089:+	CAMK4	24584	chr5:110679722:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	DCP2->chr5:112312399-112356667:+,decapping_mRNA_2,CAMK4->calcium/calmodulin-dependent_protein_kinase_IV,chr5:110559351-110830584:+	EFM192A_BREAST	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	DEPDC1B--HSD17B12	4	0	DEPDC1B	1145	chr5:59995873:-	HSD17B12	48206	chr11:43876265:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	{Klijn_CCL:Breast=1},DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12	EFM192A_BREAST	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	ERBB2--MT-CO3	3	4	ERBB2	22794	chr17:37881944:+	MT-CO3	30292	chrM:9329:+	INCL_NON_REF_SPLICE	NO	4579	3292	0	0	0.0251	0.0334	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	EFM192A_BREAST	0	0	0.0585	FALSE	0	0	0	1	0	FALSE	ACH-000117
EFM192A_BREAST	HOXB6--CISD3	4	0	HOXB6	1513	chr17:46681842:-	CISD3	10788	chr17:36887013:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	HOXB6->chr17:46671639-46682354:-,homeobox_B6,CISD3->CDGSH_iron_sulfur_domain_3,chr17:36886488-36891297:+	EFM192A_BREAST	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	4	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	1	1	0.0334	FALSE	344	821	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1046	chrM:14628:-	MT-TE	4575	chrM:14693:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	1	1	0.0334	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4584	chrM:14684:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	1	1	0.0334	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	TMEM135--GRM5-AS1	2	8	TMEM135	9064	chr11:86947726:+	GRM5-AS1	31079	chr11:88244919:+	ONLY_REF_SPLICE	YES	27	0	0.27	1	0.0167	0.0668	TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,GRM5-AS1->GRM5_antisense_RNA_1,chr11:88237744-88257222:+	EFM192A_BREAST	0.27	1	0.0835	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	PKP2--MYC	3	2	PKP2	1332	chr12:33049443:-	MYC	24439	chr8:128750494:+	ONLY_REF_SPLICE	YES	13	176	0.28	0.03	0.0251	0.0167	PKP2->chr12:32943679-33049774:-,plakophilin_2,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	EFM192A_BREAST	0.03	0.28	0.0418	TRUE	0	0	0	1	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND4--MT-ND4L	3	1	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	5	1	0.44	0.8	0.0251	0.0084	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM192A_BREAST	0.44	0.8	0.0335	FALSE	344	821	44	306	0	FALSE	ACH-000117
EFM192A_BREAST	MTND4P12--MT-ND2	3	1	MTND4P12	1984	chr5:134262743:-	MT-ND2	6257	chrM:5349:+	INCL_NON_REF_SPLICE	YES	4	3780	0.5	0	0.0251	0.0084	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EFM192A_BREAST	0	0.5	0.0335	FALSE	21	8	2	2	0	FALSE	ACH-000117
EFM192A_BREAST	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	12	0	0.45	1	0.0084	0.0752	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EFM192A_BREAST	0.45	1	0.0836	FALSE	275	511	55	178	0	FALSE	ACH-000117
EFM192A_BREAST	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	0	0.91	1	0.0084	0.0752	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EFM192A_BREAST	0.91	1	0.0836	FALSE	467	2173	244	435	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	1	1	0.0251	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM192A_BREAST	1	1	0.0251	FALSE	499	1288	110	792	0	FALSE	ACH-000117
EFM192A_BREAST	MT-TA--MT-TN	3	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFM192A_BREAST	1	1	0.0251	FALSE	369	2501	205	193	0	FALSE	ACH-000117
EFM192A_BREAST	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	EFM192A_BREAST	1	1	0.0251	TRUE	0	0	0	434	0	FALSE	ACH-000117
EFM192A_BREAST	PRDM11--COA1	3	0	PRDM11	7683	chr11:45226329:+	COA1	40603	chr7:43649240:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	PRDM11->PR_domain_11,chr11:45115564-45247734:+,COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog	EFM192A_BREAST	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	WIPF2--SGCA	2	4	WIPF2	1189	chr17:38375744:+	SGCA	22359	chr17:48244943:+	ONLY_REF_SPLICE	YES	39	6	0.13	0.5	0.0167	0.0334	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,SGCA->chr17:48241575-48253292:+,sarcoglycan_alpha	EFM192A_BREAST	0.13	0.5	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MED13--EYA2	1	7	MED13	9514	chr17:60107212:-	EYA2	44114	chr20:45618640:+	ONLY_REF_SPLICE	YES	70	1	0.1	0.89	0.0084	0.0585	MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	EFM192A_BREAST	0.1	0.89	0.0669	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	MED13--EYA2	2	2	MED13	7921	chr17:60108805:-	EYA2	44114	chr20:45618640:+	ONLY_REF_SPLICE	YES	134	1	0.03	0.8	0.0167	0.0167	MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	EFM192A_BREAST	0.03	0.8	0.0334	TRUE	0	0	0	1	0	FALSE	ACH-000117
EFM192A_BREAST	HELZ2--XPOT	2	1	HELZ2	15312	chr20:62191281:-	XPOT	42684	chr12:64841885:+	ONLY_REF_SPLICE	YES	22	168	0.12	0.02	0.0167	0.0084	HELZ2->chr20:62189439-62205592:-,helicase_with_zinc_finger_2,XPOT->chr12:64798130-64844907:+,exportin_for_tRNA	EFM192A_BREAST	0.02	0.12	0.0251	TRUE	0	0	0	1	0	FALSE	ACH-000117
EFM192A_BREAST	METTL25--TMTC2	2	1	METTL25	1420	chr12:82752695:+	TMTC2	38540	chr12:83444683:+	ONLY_REF_SPLICE	YES	4	9	0.43	0.25	0.0167	0.0084	METTL25->chr12:82752276-82873015:+,methyltransferase_like_25,TMTC2->chr12:83080659-83528649:+,transmembrane_and_tetratricopeptide_repeat_containing_2	EFM192A_BREAST	0.25	0.43	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	METTL25--TMTC2	2	1	METTL25	1420	chr12:82752695:+	TMTC2	37458	chr12:83424577:+	ONLY_REF_SPLICE	YES	4	10	0.43	0.23	0.0167	0.0084	METTL25->chr12:82752276-82873015:+,methyltransferase_like_25,TMTC2->chr12:83080659-83528649:+,transmembrane_and_tetratricopeptide_repeat_containing_2	EFM192A_BREAST	0.23	0.43	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	EFM192A_BREAST	1	1	0.0167	TRUE	2	8	0	24	0	FALSE	ACH-000117
EFM192A_BREAST	FBRSL1--NOC4L	2	0	FBRSL1	12572	chr12:133136816:+	NOC4L	33548	chr12:132635803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	EFM192A_BREAST	1	1	0.0167	TRUE	3	48	0	26	0	FALSE	ACH-000117
EFM192A_BREAST	GPC5--DYM	2	0	GPC5	10063	chr13:92797242:+	DYM	35751	chr18:46812983:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	EFM192A_BREAST	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	EFM192A_BREAST	1	1	0.0167	TRUE	145	312	16	51	0	FALSE	ACH-000117
EFM192A_BREAST	PCGF2--HOXB-AS3	2	0	PCGF2	8271	chr17:36892343:-	HOXB-AS3	21717	chr17:46681289:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2,HOXB-AS3->HOXB_cluster_antisense_RNA_3,chr17:46626992-46683776:+	EFM192A_BREAST	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	TOP2A--SCN4A	2	0	TOP2A	22013	chr17:38545768:-	SCN4A	44514	chr17:62021206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	TOP2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38544768-38574202:-,topoisomerase_(DNA)_II_alpha,SCN4A->chr17:62015914-62050278:-,sodium_voltage-gated_channel_alpha_subunit_4	EFM192A_BREAST	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	WIPF2--SGCA	1	4	WIPF2	1189	chr17:38375744:+	SGCA	22145	chr17:48244729:+	ONLY_REF_SPLICE	YES	39	0	0.11	1	0.0084	0.0334	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,SGCA->chr17:48241575-48253292:+,sarcoglycan_alpha	EFM192A_BREAST	0.11	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	WIPF2--SGCA	1	4	WIPF2	1214	chr17:38375769:+	SGCA	22724	chr17:48245308:+	ONLY_REF_SPLICE	YES	65	0	0.07	1	0.0084	0.0334	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,SGCA->chr17:48241575-48253292:+,sarcoglycan_alpha	EFM192A_BREAST	0.07	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	ZNF704--PVT1	2	0	ZNF704	3480	chr8:81733609:-	PVT1	53188	chr8:129108764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	ZNF704->chr8:81540686-81787016:-,zinc_finger_protein_704,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	EFM192A_BREAST	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	ZNF8--CASK	2	0	ZNF8	1197	chr19:58790513:+	CASK	10012	chrX:41712480:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	ZNF8->chr19:58790317-58807254:+,chr19:58790318-58807254:+,zinc_finger_protein_8,CASK->calcium/calmodulin-dependent_serine_protein_kinase_(MAGUK_family),chrX:41374187-41782716:-	EFM192A_BREAST	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000117
EFM192A_BREAST	PCGF2--HOXB-AS3	1	3	PCGF2	8271	chr17:36892343:-	HOXB-AS3	20273	chr17:46679437:+	ONLY_REF_SPLICE	YES	963	24	0	0.14	0.0084	0.0251	PCGF2->chr17:36890150-36906070:-,polycomb_group_ring_finger_2,HOXB-AS3->HOXB_cluster_antisense_RNA_3,chr17:46626992-46683776:+	EFM192A_BREAST	0	0.14	0.0335	FALSE	0	0	0	1	0	FALSE	ACH-000117
EFM192A_BREAST	HOXB6--CISD3	1	2	HOXB6	2278	chr17:46681077:-	CISD3	10788	chr17:36887013:+	ONLY_REF_SPLICE	YES	0	316	1	0.01	0.0084	0.0167	HOXB6->chr17:46671639-46682354:-,homeobox_B6,CISD3->CDGSH_iron_sulfur_domain_3,chr17:36886488-36891297:+	EFM192A_BREAST	0.01	1	0.0251	FALSE	0	0	0	1	0	FALSE	ACH-000117
EFM192A_BREAST	TMEM135--RP11-736K20.6	1	1	TMEM135	11402	chr11:87006865:+	RP11-736K20.6	28399	chr11:86710918:+	ONLY_REF_SPLICE	YES	40	0	0.05	1	0.0084	0.0084	LOCAL_REARRANGEMENT:+:[36885],TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,RP11-736K20.6->chr11:86666661-86712001:+	EFM192A_BREAST	0.05	1	0.0168	TRUE	0	0	0	1	0	TRUE	ACH-000117
NCIH1373_LUNG	MT-ND4--MT-ND4L	2059	34	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	44	0	0.98	1	24.6734	0.4074	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.98	1	25.0808	FALSE	344	826	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	TGFBR2--RBMS3	191	26	TGFBR2	1476	chr3:30648469:+	RBMS3	34802	chr3:30029634:+	ONLY_REF_SPLICE	YES	12	4	0.95	0.98	2.2888	0.3116	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+	NCIH1373_LUNG	0.95	0.98	2.6004	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	TIMM23B--LINC00843	136	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6297	0.3715	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1373_LUNG	1	1	2.0012	TRUE	508	994	45	981	0	FALSE	ACH-000845
NCIH1373_LUNG	FAM133B--CDK6	82	50	FAM133B	3935	chr7:92210820:-	CDK6	24636	chr7:92252400:-	ONLY_REF_SPLICE	YES	67	46	0.66	0.74	0.9826	0.5992	{Klijn_CCL:Lymphoid=2,Stomach=1,Lung=1},LOCAL_REARRANGEMENT:-:[14527],FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B,CDK6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:92234235-92465908:-,cyclin-dependent_kinase_6	NCIH1373_LUNG	0.66	0.74	1.5818	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	TIMM23--RP11-464F9.1	85	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	152	6	0.36	0.94	1.0186	0.024	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1373_LUNG	0.36	0.94	1.0426	TRUE	519	3926	326	965	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	41	170	MT-ND4	1386	chrM:11145:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	257	0	0.45	1	0.4913	2.0371	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.45	1	2.5284	FALSE	344	827	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	AP3D1--SLC6A8	76	0	AP3D1	26929	chr19:2101455:-	SLC6A8	38438	chrX:152961595:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9107	0	GTEx&tcga_normals:500/3694=13.54%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9]},GTEx_v2:{count=1021;pct=11.80%;dist=Thyroid=52,Muscle_-_Skeletal=40,Lung=39,Esophagus_-_Mucosa=38,Testis=37,Esophagus_-_Muscularis=36,Cells_-_Transformed_fibroblasts=34,Skin_-_Sun_Exposed_(Lower_leg)=33,Nerve_-_Tibial=30,Artery_-_Tibial=29,Pituitary=28,Adipose_-_Visceral_(Omentum)=27,Spleen=27,Colon_-_Transverse=27,Stomach=26,Adrenal_Gland=26,Pancreas=25,Adipose_-_Subcutaneous=25,Breast_-_Mammary_Tissue=24,Cells_-_EBV-transformed_lymphocytes=24,Heart_-_Atrial_Appendage=24,Brain_-_Cerebellar_Hemisphere=21,Brain_-_Cerebellum=20,Colon_-_Sigmoid=20,Prostate=19,Heart_-_Left_Ventricle=19,Artery_-_Coronary=18,Brain_-_Cortex=18,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Small_Intestine_-_Terminal_Ileum=17,Artery_-_Aorta=17,Brain_-_Frontal_Cortex_(BA9)=17,Esophagus_-_Gastroesophageal_Junction=17,Skin_-_Not_Sun_Exposed_(Suprapubic)=17,Liver=16,Brain_-_Hypothalamus=13,Minor_Salivary_Gland=12,Brain_-_Hippocampus=12,Uterus=11,Ovary=10,Brain_-_Anterior_cingulate_cortex_(BA24)=10,Brain_-_Putamen_(basal_ganglia)=9,Brain_-_Caudate_(basal_ganglia)=9,Vagina=8,Whole_Blood=6,Kidney_-_Cortex=5,Brain_-_Substantia_nigra=4,Brain_-_Spinal_cord_(cervical_c-1)=3,Brain_-_Amygdala=3,=1},AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,SLC6A8->chrX:152953554-152962048:+,solute_carrier_family_6_member_8	NCIH1373_LUNG	1	1	0.9107	TRUE	6	6	0	5	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	3	279	MT-ND4	2279	chrM:12038:+	MT-ND4L	5519	chrM:10610:+	INCL_NON_REF_SPLICE	NO	199	0	0.59	1	0.0359	3.3433	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.59	1	3.3792	FALSE	288	732	40	297	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	5	269	MT-ND4	1789	chrM:11548:+	MT-ND4L	5394	chrM:10485:+	INCL_NON_REF_SPLICE	YES	11000	0	0.02	1	0.0599	3.2235	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.02	1	3.2834	FALSE	344	827	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	5	263	MT-ND4	1735	chrM:11494:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	7464	0	0.03	1	0.0599	3.1516	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.03	1	3.2115	FALSE	344	827	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	4	267	MT-ND4	1545	chrM:11304:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1465	0	0.16	1	0.0479	3.1995	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.16	1	3.2474	FALSE	344	827	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	3	270	MT-ND4	1848	chrM:11607:+	MT-ND4L	5443	chrM:10534:+	INCL_NON_REF_SPLICE	YES	16832	0	0.02	1	0.0359	3.2355	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.02	1	3.2714	FALSE	344	827	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	3	266	MT-ND4	1902	chrM:11661:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	NO	23931	0	0.01	1	0.0359	3.1875	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.01	1	3.2234	FALSE	344	827	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	6	248	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	53	0	0.83	1	0.0719	2.9718	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.83	1	3.0437	FALSE	344	827	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	6	243	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	27	2	0.9	0.99	0.0719	2.9119	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.9	0.99	2.9838	FALSE	344	826	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	8	234	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	13	0	0.95	1	0.0959	2.8041	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.95	1	2.9	FALSE	344	826	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	3	239	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	20	0	0.92	1	0.0359	2.864	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.92	1	2.8999	FALSE	344	826	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	5	196	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	5	0	0.98	1	0.0599	2.3487	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.98	1	2.4086	FALSE	344	826	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	8	174	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	0	0.97	1	0.0959	2.0851	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.97	1	2.181	FALSE	344	821	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	10	145	MT-ND5	2788	chrM:14124:+	MT-ND4	5799	chrM:10746:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1198	1.7376	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	1	1	1.8574	FALSE	27	25	1	22	0	FALSE	ACH-000845
NCIH1373_LUNG	RGS17--VWA8	39	23	RGS17	1126	chr6:153452259:-	VWA8	56280	chr13:42189220:-	ONLY_REF_SPLICE	YES	4	6	0.94	0.91	0.4673	0.2756	RGS17->chr6:153325594-153452384:-,regulator_of_G-protein_signaling_17,VWA8->chr13:42140973-42535256:-,von_Willebrand_factor_A_domain_containing_8	NCIH1373_LUNG	0.91	0.94	0.7429	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	4	159	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	125	0	0.57	1	0.0479	1.9053	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.57	1	1.9532	FALSE	344	827	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	3	159	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	107	0	0.6	1	0.0359	1.9053	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.6	1	1.9412	FALSE	344	827	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	27	63	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	18552	0	0	1	0.3235	0.7549	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0	1	1.0784	FALSE	328	800	43	304	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	3	157	MT-ND4	1131	chrM:10890:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	20	0	0.89	1	0.0359	1.8814	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.89	1	1.9173	FALSE	344	826	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	10	126	MT-ND5	2813	chrM:14149:+	MT-ND4	5957	chrM:10904:+	INCL_NON_REF_SPLICE	YES	0	6277	1	0.02	0.1198	1.5099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0.02	1	1.6297	FALSE	29	25	1	23	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-TA--MT-TC	40	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4793	0.024	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1373_LUNG	1	1	0.5033	FALSE	462	80	0	856	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	35	21	MT-ND5	2794	chrM:14130:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	0	15427	1	0	0.4194	0.2516	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	1	0.671	FALSE	47	27	1	24	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	3	146	MT-ND4	1818	chrM:11577:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	13482	0	0.01	1	0.0359	1.7495	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.01	1	1.7854	FALSE	344	827	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	3	146	MT-ND5	2813	chrM:14149:+	MT-ND4	5799	chrM:10746:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	1.7495	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	1	1	1.7854	FALSE	27	25	1	22	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	6	127	MT-ND5	2800	chrM:14136:+	MT-ND4	5942	chrM:10889:+	INCL_NON_REF_SPLICE	YES	0	4446	1	0.03	0.0719	1.5219	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0.03	1	1.5938	FALSE	29	25	1	23	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	5	124	MT-ND5	2813	chrM:14149:+	MT-ND4	5977	chrM:10924:+	INCL_NON_REF_SPLICE	YES	0	8814	1	0.01	0.0599	1.4859	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0.01	1	1.5458	FALSE	29	25	1	23	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	4	126	MT-ND5	2847	chrM:14183:+	MT-ND4	5947	chrM:10894:+	INCL_NON_REF_SPLICE	YES	0	5177	1	0.02	0.0479	1.5099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0.02	1	1.5578	FALSE	29	25	1	23	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	3	115	MT-ND5	2691	chrM:14027:+	MT-ND4	5833	chrM:10780:+	INCL_NON_REF_SPLICE	YES	706	0	0.14	1	0.0359	1.3781	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0.14	1	1.414	FALSE	28	25	1	22	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO2	27	14	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	68	6	0.38	0.87	0.3235	0.1678	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1373_LUNG	0.38	0.87	0.4913	FALSE	59	21	0	114	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	3	106	MT-ND5	2705	chrM:14041:+	MT-ND4	5940	chrM:10887:+	INCL_NON_REF_SPLICE	YES	159	4188	0.41	0.03	0.0359	1.2702	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0.03	0.41	1.3061	FALSE	29	25	1	23	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	4	101	MT-ND5	2764	chrM:14100:+	MT-ND4	6098	chrM:11045:+	INCL_NON_REF_SPLICE	YES	1	19309	0.99	0.01	0.0479	1.2103	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0.01	0.99	1.2582	FALSE	47	27	1	23	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	26	12	MT-ND5	2112	chrM:13448:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	5458	15427	0.01	0	0.3116	0.1438	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	0.01	0.4554	FALSE	47	29	1	25	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	27	3	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10550	25765	0	0	0.3235	0.0359	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0	0.3594	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	9	65	MT-ND5	2730	chrM:14066:+	MT-ND4	6214	chrM:11161:+	INCL_NON_REF_SPLICE	YES	4	24448	0.95	0	0.1078	0.7789	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	0.95	0.8867	FALSE	47	27	1	24	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	3	83	MT-ND5	2589	chrM:13925:+	MT-ND4	5914	chrM:10861:+	INCL_NON_REF_SPLICE	YES	2761	17	0.03	0.83	0.0359	0.9946	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0.03	0.83	1.0305	FALSE	29	26	1	23	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	6	69	MT-ND5	2718	chrM:14054:+	MT-ND4	6199	chrM:11146:+	INCL_NON_REF_SPLICE	YES	7	24442	0.91	0	0.0719	0.8268	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	0.91	0.8987	FALSE	47	27	1	24	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	8	59	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	10063	0	0.01	1	0.0959	0.707	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.01	1	0.8029	FALSE	344	827	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	6	65	MT-ND5	2812	chrM:14148:+	MT-ND4	6259	chrM:11206:+	INCL_NON_REF_SPLICE	YES	0	24883	1	0	0.0719	0.7789	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	1	0.8508	FALSE	47	27	1	24	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO2	19	12	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	62	6	0.33	0.84	0.2277	0.1438	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1373_LUNG	0.33	0.84	0.3715	FALSE	59	21	0	114	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	15	27	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.1797	0.3235	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	0.91	1	0.5032	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND3--MT-ATP8	21	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2516	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	1	1	0.2516	FALSE	351	233	23	137	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	6	58	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1141	0	0.05	1	0.0719	0.695	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.05	1	0.7669	FALSE	344	827	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	17	14	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2726	4	0.01	0.89	0.2037	0.1678	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	0.01	0.89	0.3715	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	17	13	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5424	82	0.01	0.27	0.2037	0.1558	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	0.01	0.27	0.3595	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	4	65	MT-ND5	2112	chrM:13448:+	MT-ND4	5896	chrM:10843:+	INCL_NON_REF_SPLICE	YES	5458	0	0.01	1	0.0479	0.7789	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0.01	1	0.8268	FALSE	32	27	1	23	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	3	66	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.97	0.0359	0.7909	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.97	1	0.8268	FALSE	344	821	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO2	15	14	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	68	6	0.3	0.83	0.1797	0.1678	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1373_LUNG	0.3	0.83	0.3475	FALSE	59	21	0	114	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	8	41	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	14263	0	0	1	0.0959	0.4913	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0	1	0.5872	FALSE	344	827	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	3	59	MT-ND5	1932	chrM:13268:+	MT-ND4	5872	chrM:10819:+	INCL_NON_REF_SPLICE	YES	4772	0	0.01	1	0.0359	0.707	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0.01	1	0.7429	FALSE	31	27	1	23	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	4	54	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	48	0	0.55	1	0.0479	0.6471	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.55	1	0.695	FALSE	344	826	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	4	54	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	89	0	0.39	1	0.0479	0.6471	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.39	1	0.695	FALSE	344	827	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	12	21	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4	583	0.89	0.05	0.1438	0.2516	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	0.05	0.89	0.3954	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	7	40	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	675	0	0.07	1	0.0839	0.4793	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.07	1	0.5632	FALSE	344	827	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	3	56	MT-ND5	2224	chrM:13560:+	MT-ND4	6098	chrM:11045:+	INCL_NON_REF_SPLICE	YES	2818	19309	0.02	0	0.0359	0.6711	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	0.02	0.707	FALSE	47	29	1	23	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND6--MT-TE	15	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1797	0.0839	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1373_LUNG	1	1	0.2636	FALSE	499	1288	110	792	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	7	38	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.0839	0.4554	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.96	1	0.5393	FALSE	344	821	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	3	54	MT-ND5	2047	chrM:13383:+	MT-ND4	5957	chrM:10904:+	INCL_NON_REF_SPLICE	YES	4719	6277	0.01	0.01	0.0359	0.6471	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0.01	0.01	0.683	FALSE	32	27	1	24	0	FALSE	ACH-000845
NCIH1373_LUNG	C15orf57--CBX3	13	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	37	15	0.37	0.59	0.1558	0.1078	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1373_LUNG	0.37	0.59	0.2636	TRUE	267	562	48	632	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	3	48	MT-ND5	2751	chrM:14087:+	MT-ND4	6333	chrM:11280:+	INCL_NON_REF_SPLICE	YES	3	26654	0.94	0	0.0359	0.5752	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	0.94	0.6111	FALSE	47	27	1	24	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	10	19	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	101	0	0.22	1	0.1198	0.2277	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.22	1	0.3475	FALSE	344	827	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	7	31	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0.3715	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	1	1	0.4554	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-CO1--MT-ND2	14	1	MT-CO1	1653	chrM:6556:+	MT-ND2	6453	chrM:5380:+	INCL_NON_REF_SPLICE	YES	26193	248	0	0.06	0.1678	0.012	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1373_LUNG	0	0.06	0.1798	FALSE	55	19	1	13	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	3	45	MT-ND5	2455	chrM:13791:+	MT-ND4	6199	chrM:11146:+	INCL_NON_REF_SPLICE	YES	2162	24442	0.02	0	0.0359	0.5392	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	0.02	0.5751	FALSE	47	28	1	24	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	7	28	MT-ND5	2730	chrM:14066:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.0839	0.3355	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	0.9	1	0.4194	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	12	6	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13025	25765	0	0	0.1438	0.0719	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0	0.2157	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-ND1	13	2	MT-ATP6	1126	chrM:8652:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	11039	8405	0	0	0.1558	0.024	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1373_LUNG	0	0	0.1798	FALSE	78	55	12	7	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	5	33	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.0599	0.3954	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	0.9	1	0.4553	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	12	4	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	11013	25979	0	0	0.1438	0.0479	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0	0.1917	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	3	40	MT-ND5	1894	chrM:13230:+	MT-ND4	6085	chrM:11032:+	INCL_NON_REF_SPLICE	YES	4331	18377	0.01	0	0.0359	0.4793	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	0.01	0.5152	FALSE	47	29	1	24	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	3	40	MT-ND5	2131	chrM:13467:+	MT-ND4	6148	chrM:11095:+	INCL_NON_REF_SPLICE	YES	4904	23108	0.01	0	0.0359	0.4793	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	0.01	0.5152	FALSE	47	29	1	25	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	3	38	MT-ND5	2871	chrM:14207:+	MT-ATP8	5823	chrM:8376:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0.4554	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	1	1	0.4913	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	4	34	MT-ND5	2795	chrM:14131:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0.4074	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	1	1	0.4553	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	4	33	MT-ND5	1820	chrM:13156:+	MT-ND4	6089	chrM:11036:+	INCL_NON_REF_SPLICE	YES	2706	18471	0.01	0	0.0479	0.3954	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	0.01	0.4433	FALSE	47	29	1	24	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	7	20	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3617	26322	0.01	0	0.0839	0.2397	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0.01	0.3236	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO2	10	8	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	47	6	0.28	0.75	0.1198	0.0959	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1373_LUNG	0.28	0.75	0.2157	FALSE	59	21	0	114	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	3	35	MT-ND5	2099	chrM:13435:+	MT-ND4	6189	chrM:11136:+	INCL_NON_REF_SPLICE	YES	5304	24537	0.01	0	0.0359	0.4194	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	0.01	0.4553	FALSE	47	29	1	25	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND6--MT-TE	8	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0959	0.1558	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1373_LUNG	1	1	0.2517	FALSE	499	1288	110	792	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	10	4	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	10164	21647	0	0	0.1198	0.0479	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0	0.1677	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	10	4	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	10842	25354	0	0	0.1198	0.0479	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0	0.1677	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO2	4	28	MT-ATP6	1577	chrM:9103:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.84	0.0479	0.3355	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1373_LUNG	0.84	1	0.3834	FALSE	59	21	0	114	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	3	32	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0.3835	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	1	1	0.4194	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	7	15	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	3222	0	0.01	1	0.0839	0.1797	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	0.01	1	0.2636	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	3	31	MT-ND5	1630	chrM:12966:+	MT-ND4	5999	chrM:10946:+	INCL_NON_REF_SPLICE	YES	1844	10960	0.02	0	0.0359	0.3715	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	0.02	0.4074	FALSE	20	23	0	21	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	9	6	MT-ND5	2297	chrM:13633:+	MT-ND4	6879	chrM:11826:+	INCL_NON_REF_SPLICE	YES	2280	935	0.01	0.02	0.1078	0.0719	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0.01	0.02	0.1797	FALSE	47	29	1	23	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	3	28	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	1879	15668	0.02	0	0.0359	0.3355	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0.02	0.3714	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	4	23	MT-ATP6	1558	chrM:9084:+	MT-CO1	5226	chrM:6448:+	INCL_NON_REF_SPLICE	YES	3071	24463	0.01	0	0.0479	0.2756	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0.01	0.3235	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND6--MT-TE	7	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.0839	0.1318	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1373_LUNG	0.86	1	0.2157	FALSE	499	1288	110	792	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO2	5	18	MT-ATP6	1555	chrM:9081:+	MT-CO2	4955	chrM:7859:+	INCL_NON_REF_SPLICE	YES	3	6	0.88	0.79	0.0599	0.2157	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1373_LUNG	0.79	0.88	0.2756	FALSE	59	21	0	114	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	6	14	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	2647	1245	0.01	0.02	0.0719	0.1678	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	0.01	0.02	0.2397	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	4	22	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7	4	0.79	0.87	0.0479	0.2636	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	0.79	0.87	0.3115	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	5	18	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	2196	0	0.01	1	0.0599	0.2157	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	0.01	1	0.2756	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3537	0	0	1	0.1078	0.012	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1373_LUNG	0	1	0.1198	FALSE	13	9	0	364	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	4	21	MT-ATP6	1537	chrM:9063:+	MT-CO1	5319	chrM:6541:+	INCL_NON_REF_SPLICE	YES	5000	25356	0	0	0.0479	0.2516	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0	0.2995	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	ELOF1--LRFN2	9	0	ELOF1	4387	chr19:11664418:-	LRFN2	9897	chr6:40555151:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1078	0	ELOF1->chr19:11661962-11670051:-,elongation_factor_1_homolog,LRFN2->chr6:40359325-40555204:-,leucine_rich_repeat_and_fibronectin_type_III_domain_containing_2	NCIH1373_LUNG	1	1	0.1078	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	4	20	MT-ND5	1408	chrM:12744:+	MT-ND4	5957	chrM:10904:+	INCL_NON_REF_SPLICE	YES	268	6277	0.08	0	0.0479	0.2397	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	0.08	0.2876	FALSE	17	23	0	20	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	4	19	MT-ND5	2290	chrM:13626:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2318	0	0.01	1	0.0479	0.2277	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	0.01	1	0.2756	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	PARD3--TMTC1	6	11	PARD3	28968	chr10:34558585:-	TMTC1	40171	chr12:29921008:-	ONLY_REF_SPLICE	YES	23	0	0.42	1	0.0719	0.1318	PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,TMTC1->chr12:29653773-29937692:-,transmembrane_and_tetratricopeptide_repeat_containing_1	NCIH1373_LUNG	0.42	1	0.2037	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-ND1	8	2	MT-ATP6	1111	chrM:8637:+	MT-ND1	4880	chrM:3505:+	INCL_NON_REF_SPLICE	YES	10594	7890	0	0	0.0959	0.024	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1373_LUNG	0	0	0.1199	FALSE	78	55	12	7	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-CO1--MT-ND2	7	6	MT-CO1	1653	chrM:6556:+	MT-ND2	6382	chrM:5309:+	INCL_NON_REF_SPLICE	YES	26193	1194	0	0.01	0.0839	0.0719	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1373_LUNG	0	0.01	0.1558	FALSE	55	19	1	13	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-CO1--MT-ND2	6	10	MT-CO1	1582	chrM:6485:+	MT-ND2	5999	chrM:4926:+	INCL_NON_REF_SPLICE	YES	23086	20956	0	0	0.0719	0.1198	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1373_LUNG	0	0	0.1917	FALSE	55	19	1	13	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-CO1--MT-ND2	6	10	MT-CO1	1603	chrM:6506:+	MT-ND2	5988	chrM:4915:+	INCL_NON_REF_SPLICE	YES	22843	21185	0	0	0.0719	0.1198	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1373_LUNG	0	0	0.1917	FALSE	55	19	1	13	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	7	6	MT-ND5	1969	chrM:13305:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4671	583	0	0.02	0.0839	0.0719	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	0	0.02	0.1558	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	3	22	MT-ND5	2644	chrM:13980:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	1853	0	0.01	1	0.0359	0.2636	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	0.01	1	0.2995	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO2	4	17	MT-ATP6	1221	chrM:8747:+	MT-CO2	4765	chrM:7669:+	INCL_NON_REF_SPLICE	YES	95	0	0.18	1	0.0479	0.2037	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1373_LUNG	0.18	1	0.2516	FALSE	59	21	0	114	0	FALSE	ACH-000845
NCIH1373_LUNG	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0959	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1373_LUNG	1	1	0.0959	FALSE	13	9	0	364	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO2	6	8	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	19	6	0.42	0.7	0.0719	0.0959	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1373_LUNG	0.42	0.7	0.1678	FALSE	59	21	0	114	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-ND1	5	12	MT-ATP6	1554	chrM:9080:+	MT-ND1	4888	chrM:3513:+	INCL_NON_REF_SPLICE	YES	3651	8113	0	0	0.0599	0.1438	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1373_LUNG	0	0	0.2037	FALSE	78	55	12	7	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-CO1--MT-ND2	3	20	MT-CO1	1688	chrM:6591:+	MT-ND2	5967	chrM:4894:+	INCL_NON_REF_SPLICE	YES	26157	21240	0	0	0.0359	0.2397	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1373_LUNG	0	0	0.2756	FALSE	55	19	1	13	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	7	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0.0479	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	1	1	0.1318	FALSE	344	821	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	6	7	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	13025	0	0	1	0.0719	0.0839	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	1	0.1558	FALSE	182	97	9	327	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	3	19	MT-ND5	1372	chrM:12708:+	MT-ND4	6014	chrM:10961:+	INCL_NON_REF_SPLICE	YES	169	13163	0.12	0	0.0359	0.2277	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	0.12	0.2636	FALSE	17	23	0	20	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO2	4	14	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	70	6	0.2	0.75	0.0479	0.1678	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1373_LUNG	0.2	0.75	0.2157	FALSE	59	21	0	114	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-CO1--MT-ND2	6	6	MT-CO1	1588	chrM:6491:+	MT-ND2	6230	chrM:5157:+	INCL_NON_REF_SPLICE	YES	22385	6039	0	0	0.0719	0.0719	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1373_LUNG	0	0	0.1438	FALSE	55	19	1	13	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	3	18	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	101	0	0.17	1	0.0359	0.2157	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	0.17	1	0.2516	FALSE	344	827	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	3	18	MT-ND5	2167	chrM:13503:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	3994	0	0.01	1	0.0359	0.2157	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	0.01	1	0.2516	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-TA--MT-TC	7	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0.024	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1373_LUNG	1	1	0.1079	FALSE	462	80	0	856	0	FALSE	ACH-000845
NCIH1373_LUNG	FAM133B--CDK6	5	9	FAM133B	1127	chr7:92219582:-	CDK6	24636	chr7:92252400:-	ONLY_REF_SPLICE	YES	32	46	0.3	0.23	0.0599	0.1078	{Klijn_CCL:Lymphoid=2,Stomach=1,Lung=1},LOCAL_REARRANGEMENT:-:[14527],FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B,CDK6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:92234235-92465908:-,cyclin-dependent_kinase_6	NCIH1373_LUNG	0.23	0.3	0.1677	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO2	5	9	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	51	6	0.22	0.7	0.0599	0.1078	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1373_LUNG	0.22	0.7	0.1677	FALSE	59	21	0	114	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	3	17	MT-ND5	2647	chrM:13983:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1819	4	0.01	0.83	0.0359	0.2037	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	0.01	0.83	0.2396	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO2	5	8	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	45	6	0.22	0.68	0.0599	0.0959	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1373_LUNG	0.22	0.68	0.1558	FALSE	59	21	0	114	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND6--MT-TE	7	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1373_LUNG	1	1	0.0839	FALSE	499	1288	110	792	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO2	6	3	MT-ATP6	1072	chrM:8598:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	13	5	0.41	0.64	0.0719	0.0359	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1373_LUNG	0.41	0.64	0.1078	FALSE	59	21	0	114	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND6--MT-TE	5	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0599	0.0839	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1373_LUNG	1	1	0.1438	FALSE	499	1288	110	792	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	5	6	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	12436	24485	0	0	0.0599	0.0719	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0	0.1318	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-CO1--MT-ND2	4	10	MT-CO1	1653	chrM:6556:+	MT-ND2	6283	chrM:5210:+	INCL_NON_REF_SPLICE	YES	26193	3853	0	0	0.0479	0.1198	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1373_LUNG	0	0	0.1677	FALSE	55	19	1	13	0	FALSE	ACH-000845
NCIH1373_LUNG	FAM133B--CDK6	1	20	FAM133B	3935	chr7:92210820:-	CDK6	25757	chr7:92247521:-	ONLY_REF_SPLICE	YES	67	35	0.24	0.38	0.012	0.2397	{Klijn_CCL:Lymphoid=2,Stomach=1,Lung=1},LOCAL_REARRANGEMENT:-:[14527],FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B,CDK6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:92234235-92465908:-,cyclin-dependent_kinase_6	NCIH1373_LUNG	0.24	0.38	0.2517	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	5	4	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	10670	21887	0	0	0.0599	0.0479	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0	0.1078	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-ND1	3	12	MT-ATP6	1542	chrM:9068:+	MT-ND1	4876	chrM:3501:+	INCL_NON_REF_SPLICE	YES	4732	7803	0	0	0.0359	0.1438	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1373_LUNG	0	0	0.1797	FALSE	78	55	12	7	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-ND1	3	12	MT-ATP6	1558	chrM:9084:+	MT-ND1	4887	chrM:3512:+	INCL_NON_REF_SPLICE	YES	3069	8165	0	0	0.0359	0.1438	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1373_LUNG	0	0	0.1797	FALSE	78	55	12	7	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND3--MT-ATP8	6	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	1	1	0.0719	FALSE	351	233	23	137	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	4	8	MT-ND5	1215	chrM:12551:+	MT-ND4	5995	chrM:10942:+	INCL_NON_REF_SPLICE	YES	54	10652	0.18	0	0.0479	0.0959	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	0.18	0.1438	FALSE	12	16	0	18	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-TA--MT-TC	5	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0599	0.0479	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1373_LUNG	1	1	0.1078	FALSE	462	80	0	856	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-ND1	5	3	MT-ATP6	1158	chrM:8684:+	MT-ND1	5165	chrM:3790:+	INCL_NON_REF_SPLICE	YES	13012	10950	0	0	0.0599	0.0359	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1373_LUNG	0	0	0.0958	FALSE	78	55	12	7	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-CO1--MT-ND2	3	11	MT-CO1	2541	chrM:7444:+	MT-ND2	6353	chrM:5280:+	INCL_NON_REF_SPLICE	YES	0	1805	1	0.01	0.0359	0.1318	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1373_LUNG	0.01	1	0.1677	FALSE	55	19	1	13	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	4	6	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	11271	22216	0	0	0.0479	0.0719	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0	0.1198	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	4	5	MT-ATP6	1530	chrM:9056:+	MT-CO1	5890	chrM:7112:+	INCL_NON_REF_SPLICE	YES	5471	22188	0	0	0.0479	0.0599	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0	0.1078	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-CO1--MT-ND2	4	5	MT-CO1	1699	chrM:6602:+	MT-ND2	6400	chrM:5327:+	INCL_NON_REF_SPLICE	NO	25673	918	0	0.01	0.0479	0.0599	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1373_LUNG	0	0.01	0.1078	FALSE	55	19	1	13	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND6--MT-TE	3	9	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0.1078	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1373_LUNG	1	1	0.1437	FALSE	499	1288	110	792	0	FALSE	ACH-000845
NCIH1373_LUNG	YWHAG--SRCRB4D	5	1	YWHAG	1310	chr7:75988039:-	SRCRB4D	12985	chr7:76028114:-	ONLY_REF_SPLICE	YES	754	3	0.01	0.67	0.0599	0.012	LOCAL_REARRANGEMENT:-:[30303],YWHAG->chr7:75956116-75988348:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_gamma,SRCRB4D->chr7:76018651-76039012:-	NCIH1373_LUNG	0.01	0.67	0.0719	FALSE	0	0	0	1	0	FALSE	ACH-000845
NCIH1373_LUNG	HSPBP1--GRK5	5	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0599	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH1373_LUNG	1	1	0.0599	TRUE	1	39	0	134	39	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	4	4	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10968	25765	0	0	0.0479	0.0479	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0	0.0958	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO2	3	8	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	19	6	0.37	0.65	0.0359	0.0959	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1373_LUNG	0.37	0.65	0.1318	FALSE	59	21	0	114	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-ND1	5	0	MT-ATP6	1130	chrM:8656:+	MT-ND1	5169	chrM:3794:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0599	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1373_LUNG	1	1	0.0599	FALSE	78	55	12	7	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0599	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	1	1	0.0599	FALSE	344	821	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	C15orf57--CBX3	3	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	33	15	0.23	0.4	0.0359	0.0839	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1373_LUNG	0.23	0.4	0.1198	TRUE	267	562	48	632	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	4	3	MT-ND5	2812	chrM:14148:+	MT-ND4	7024	chrM:11971:+	INCL_NON_REF_SPLICE	YES	0	99	1	0.07	0.0479	0.0359	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0.07	1	0.0838	FALSE	45	27	1	23	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	3	6	MT-ATP6	1150	chrM:8676:+	MT-CO1	5195	chrM:6417:+	INCL_NON_REF_SPLICE	NO	12503	23667	0	0	0.0359	0.0719	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0	0.1078	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-CO1--MT-ND2	4	2	MT-CO1	1642	chrM:6545:+	MT-ND2	6442	chrM:5369:+	INCL_NON_REF_SPLICE	YES	25507	367	0	0.02	0.0479	0.024	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1373_LUNG	0	0.02	0.0719	FALSE	55	19	1	13	0	FALSE	ACH-000845
NCIH1373_LUNG	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0479	0.024	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1373_LUNG	0.86	1	0.0719	FALSE	407	2205	196	549	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	3	5	MT-ATP6	1555	chrM:9081:+	MT-CO1	5956	chrM:7178:+	INCL_NON_REF_SPLICE	YES	3617	17222	0	0	0.0359	0.0599	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0	0.0958	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	3	5	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	11124	24311	0	0	0.0359	0.0599	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0	0.0958	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO2	3	5	MT-ATP6	1142	chrM:8668:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	61	5	0.12	0.62	0.0359	0.0599	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1373_LUNG	0.12	0.62	0.0958	FALSE	59	21	0	114	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-ND1	4	1	MT-ATP6	1098	chrM:8624:+	MT-ND1	4697	chrM:3322:+	INCL_NON_REF_SPLICE	YES	9762	0	0	1	0.0479	0.012	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1373_LUNG	0	1	0.0599	FALSE	78	55	12	7	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-CO1--MT-ND2	3	5	MT-CO1	1653	chrM:6556:+	MT-ND2	6394	chrM:5321:+	INCL_NON_REF_SPLICE	YES	26193	976	0	0.01	0.0359	0.0599	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1373_LUNG	0	0.01	0.0958	FALSE	55	19	1	13	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-CO1--MT-ND2	4	1	MT-CO1	1212	chrM:6115:+	MT-ND2	6265	chrM:5192:+	INCL_NON_REF_SPLICE	YES	3267	4668	0	0	0.0479	0.012	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1373_LUNG	0	0	0.0599	FALSE	55	18	1	13	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	3	5	MT-ND5	1770	chrM:13106:+	MT-ATP8	5861	chrM:8414:+	INCL_NON_REF_SPLICE	YES	2682	0	0	1	0.0359	0.0599	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	0	1	0.0958	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	3	5	MT-ND5	2303	chrM:13639:+	MT-ND4	6911	chrM:11858:+	INCL_NON_REF_SPLICE	NO	2139	623	0	0.01	0.0359	0.0599	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	0.01	0.0958	FALSE	47	29	1	23	0	FALSE	ACH-000845
NCIH1373_LUNG	VTI1A--RP11-57H14.3	4	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	39	0	0.11	1	0.0479	0.012	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH1373_LUNG	0.11	1	0.0599	FALSE	272	151	14	158	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	3	4	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	10968	23494	0	0	0.0359	0.0479	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	0	0	0.0838	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO2	3	4	MT-ATP6	1112	chrM:8638:+	MT-CO2	4950	chrM:7854:+	INCL_NON_REF_SPLICE	YES	19	6	0.27	0.54	0.0359	0.0479	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1373_LUNG	0.27	0.54	0.0838	FALSE	59	21	0	114	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO2	3	4	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	47	5	0.13	0.58	0.0359	0.0479	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1373_LUNG	0.13	0.58	0.0838	FALSE	59	21	0	114	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-ND1	4	0	MT-ATP6	1187	chrM:8713:+	MT-ND1	5372	chrM:3997:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1373_LUNG	1	1	0.0479	FALSE	78	55	12	7	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-ND1	4	0	MT-ATP6	1157	chrM:8683:+	MT-ND1	5389	chrM:4014:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1373_LUNG	1	1	0.0479	FALSE	78	55	12	7	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	1	1	0.0479	FALSE	344	821	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ATP8	3	4	MT-ND5	1793	chrM:13129:+	MT-ATP8	5921	chrM:8474:+	INCL_NON_REF_SPLICE	YES	2580	110	0	0.06	0.0359	0.0479	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1373_LUNG	0	0.06	0.0838	FALSE	43	37	8	105	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1373_LUNG	1	1	0.0479	FALSE	462	80	0	856	0	FALSE	ACH-000845
NCIH1373_LUNG	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH1373_LUNG	1	1	0.0479	TRUE	22	156	2	142	0	FALSE	ACH-000845
NCIH1373_LUNG	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0479	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1373_LUNG	1	1	0.0479	TRUE	465	1949	224	605	0	FALSE	ACH-000845
NCIH1373_LUNG	RP4-565E6.1--HYDIN	3	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0.0359	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1373_LUNG	1	1	0.0718	TRUE	456	1387	91	133	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	3	2	MT-ND5	1236	chrM:12572:+	MT-ND4	6854	chrM:11801:+	INCL_NON_REF_SPLICE	YES	59	1265	0.08	0	0.0359	0.024	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	0	0.08	0.0599	FALSE	14	16	1	17	0	FALSE	ACH-000845
NCIH1373_LUNG	FAM133B--CDK6	1	9	FAM133B	1127	chr7:92219582:-	CDK6	23335	chr7:92300849:-	ONLY_REF_SPLICE	YES	32	38	0.24	0.21	0.012	0.1078	{Klijn_CCL:Lymphoid=2,Stomach=1,Lung=1},LOCAL_REARRANGEMENT:-:[14527],FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B,CDK6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:92234235-92465908:-,cyclin-dependent_kinase_6	NCIH1373_LUNG	0.21	0.24	0.1198	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	FOSL1--SNX32	3	1	FOSL1	1333	chr11:65667712:-	SNX32	11234	chr11:65616949:+	ONLY_REF_SPLICE	YES	999	0	0	1	0.0359	0.012	LOCAL_INVERSION:-:+:[35153],FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,SNX32->chr11:65601112-65624367:+,sorting_nexin_32	NCIH1373_LUNG	0	1	0.0479	FALSE	0	0	0	1	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-ND1	3	1	MT-ATP6	1111	chrM:8637:+	MT-ND1	5134	chrM:3759:+	INCL_NON_REF_SPLICE	YES	10594	11884	0	0	0.0359	0.012	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1373_LUNG	0	0	0.0479	FALSE	78	55	12	7	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-TW--MT-ND2	3	1	MT-TW	1004	chrM:5515:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	82	1	0.05	0.0359	0.012	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1373_LUNG	0.05	1	0.0479	FALSE	14	0	0	19	0	FALSE	ACH-000845
NCIH1373_LUNG	KCNQ5-IT1--KCNQ5	3	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	NCIH1373_LUNG	1	1	0.0359	FALSE	1	11	0	34	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1081	chrM:8607:+	MT-CO1	5873	chrM:7095:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1373_LUNG	1	1	0.0359	FALSE	183	104	9	328	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-ND1	3	0	MT-ATP6	1098	chrM:8624:+	MT-ND1	5248	chrM:3873:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1373_LUNG	1	1	0.0359	FALSE	78	55	12	7	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-ND1	3	0	MT-ATP6	1158	chrM:8684:+	MT-ND1	5482	chrM:4107:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1373_LUNG	1	1	0.0359	FALSE	78	55	12	7	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-ND1	3	0	MT-ATP6	1127	chrM:8653:+	MT-ND1	5391	chrM:4016:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1373_LUNG	1	1	0.0359	FALSE	78	55	12	7	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP6--MT-ND1	3	0	MT-ATP6	1113	chrM:8639:+	MT-ND1	5181	chrM:3806:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1373_LUNG	1	1	0.0359	FALSE	78	55	12	7	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ATP8--MT-ND2	3	0	MT-ATP8	1075	chrM:8440:+	MT-ND2	4766	chrM:5028:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[2855],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1373_LUNG	1	1	0.0359	FALSE	26	2	1	4	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1373_LUNG	1	1	0.0359	FALSE	344	821	44	306	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND5--MT-ND4	3	0	MT-ND5	1962	chrM:13298:+	MT-ND4	7074	chrM:12021:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH1373_LUNG	1	1	0.0359	FALSE	45	28	1	23	0	FALSE	ACH-000845
NCIH1373_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1373_LUNG	1	1	0.0359	FALSE	499	1288	110	792	0	FALSE	ACH-000845
NCIH1373_LUNG	WTAPP1--RUVBL1	3	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	NCIH1373_LUNG	1	1	0.0359	TRUE	9	252	6	66	0	FALSE	ACH-000845
NCIH1373_LUNG	ZNF618--AKAP2	3	0	ZNF618	10076	chr9:116779064:+	AKAP2	32371	chr9:112686015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0	ZNF618->chr9:116638562-116818871:+,zinc_finger_protein_618,AKAP2->A-kinase_anchoring_protein_2,chr9:112542769-112934792:+	NCIH1373_LUNG	1	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	POLE4--RP11-355F16.1	2	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	273	0	0.01	1	0.024	0.012	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	NCIH1373_LUNG	0.01	1	0.036	FALSE	5	7	0	37	0	FALSE	ACH-000845
NCIH1373_LUNG	KCNQ5-IT1--KCNQ5	2	0	KCNQ5-IT1	1097	chr6:73340319:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	NCIH1373_LUNG	1	1	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000845
NCIH1373_LUNG	LGALS1--FNBP1	2	0	LGALS1	2458	chr22:38073072:+	FNBP1	14755	chr9:132691974:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1,FNBP1->Oncogene{Bushman},chr9:132649466-132805473:-,formin_binding_protein_1	NCIH1373_LUNG	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	MET--CAV1	2	0	MET	4452	chr7:116340338:+	CAV1	33564	chr7:116199000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	{Klijn_CCL:Head-Neck=1},MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	NCIH1373_LUNG	1	1	0.024	TRUE	0	1	0	3	1	TRUE	ACH-000845
NCIH1373_LUNG	NDC80--HIF1A	2	0	NDC80	4483	chr18:2577356:+	HIF1A	39781	chr14:62211423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx_FI:{Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Cells_-_Transformed_fibroblasts=4,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Lung=1,Artery_-_Coronary=1,Esophagus_-_Muscularis=1},NDC80->NDC80_kinetochore_complex_component,chr18:2571510-2616634:+,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	NCIH1373_LUNG	1	1	0.024	TRUE	2	27	1	8	0	FALSE	ACH-000845
NCIH1373_LUNG	OIP5--RPS6KB1	2	0	OIP5	2830	chr15:41611856:-	RPS6KB1	22991	chr17:58018197:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	OIP5->Opa_interacting_protein_5,chr15:41601466-41624819:-,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	NCIH1373_LUNG	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	PRDM8--ANTXR2	2	0	PRDM8	1177	chr4:81105209:+	ANTXR2	40137	chr4:80828621:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	LOCAL_INVERSION:+:-:[58425],PRDM8->PR_domain_8,chr4:81105033-81125483:+,ANTXR2->anthrax_toxin_receptor_2,chr4:80822303-81046608:-	NCIH1373_LUNG	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000845
NCIH1373_LUNG	RPSAP52--HMGA2	2	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	NCIH1373_LUNG	1	1	0.024	FALSE	0	59	0	125	0	FALSE	ACH-000845
NCIH1373_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.75	0.75	0.012	0.024	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1373_LUNG	0.75	0.75	0.036	FALSE	515	4851	409	746	0	FALSE	ACH-000845
NCIH1373_LUNG	RP4-565E6.1--HYDIN	1	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.012	0.024	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1373_LUNG	1	1	0.036	TRUE	84	87	4	41	0	FALSE	ACH-000845
NCIH1373_LUNG	RANBP9--RREB1	1	1	RANBP9	1630	chr6:13711167:-	RREB1	31134	chr6:7211037:+	ONLY_REF_SPLICE	NO	21	18	0.09	0.1	0.012	0.012	RANBP9->RAN_binding_protein_9,chr6:13621730-13711796:-,RREB1->Oncogene{Bushman},chr6:7107830-7252213:+,ras_responsive_element_binding_protein_1	NCIH1373_LUNG	0.09	0.1	0.024	TRUE	0	0	0	1	0	FALSE	ACH-000845
MELHO_SKIN	ARL6IP1--PKD1P5	52	449	ARL6IP1	3312	chr16:18809325:-	PKD1P5	33995	chr16:18462169:-	INCL_NON_REF_SPLICE	YES	806	28	0.38	0.95	0.7535	6.5058	ARL6IP1->ADP_ribosylation_factor_like_GTPase_6_interacting_protein_1,chr16:18802991-18813000:-,PKD1P5->chr16:18458147-18495797:-,polycystin_1,_transient_receptor_potential_channel_interacting_pseudogene_5	MELHO_SKIN	0.38	0.95	7.2593	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	TIMM23B--LINC00843	59	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8549	0.2173	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MELHO_SKIN	0.99	1	1.0722	TRUE	508	994	45	981	0	FALSE	ACH-000450
MELHO_SKIN	MT-TA--MT-TC	40	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5796	0.0724	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MELHO_SKIN	1	1	0.652	FALSE	462	80	0	856	0	FALSE	ACH-000450
MELHO_SKIN	MT-ND4--MT-ND4L	4	142	MT-ND4	1197	chrM:10956:+	MT-ND4L	5432	chrM:10523:+	INCL_NON_REF_SPLICE	YES	28	0	0.84	1	0.058	2.0575	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MELHO_SKIN	0.84	1	2.1155	FALSE	344	826	44	306	0	FALSE	ACH-000450
MELHO_SKIN	TIMM23--RP11-464F9.1	39	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	138	1	0.23	0.98	0.5651	0.029	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MELHO_SKIN	0.23	0.98	0.5941	TRUE	519	3926	326	965	0	FALSE	ACH-000450
MELHO_SKIN	SLC22A18AS--USP47	34	12	SLC22A18AS	3552	chr11:2920626:-	USP47	20549	chr11:11941703:+	ONLY_REF_SPLICE	YES	45	37	0.51	0.55	0.4926	0.1739	SLC22A18AS->chr11:2909010-2924970:-,solute_carrier_family_22_member_18_antisense,USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47	MELHO_SKIN	0.51	0.55	0.6665	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	MT-ND4--MT-ND4L	3	98	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.0435	1.42	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MELHO_SKIN	0.97	1	1.4635	FALSE	344	821	44	306	0	FALSE	ACH-000450
MELHO_SKIN	MT-ND6--MT-TE	21	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3043	0.0435	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MELHO_SKIN	1	1	0.3478	FALSE	499	1288	110	792	0	FALSE	ACH-000450
MELHO_SKIN	DEXI--PPP6R3	17	14	DEXI	4396	chr16:11023074:-	PPP6R3	23099	chr11:68334482:+	ONLY_REF_SPLICE	YES	43	143	0.42	0.18	0.2463	0.2029	DEXI->Dexi_homolog,chr16:11022748-11036317:-,PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3	MELHO_SKIN	0.18	0.42	0.4492	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	CHD1L--HYDIN	16	6	CHD1L	20555	chr1:146759412:+	HYDIN	55970	chr16:71065820:-	ONLY_REF_SPLICE	YES	89	0	0.2	1	0.2318	0.0869	CHD1L->chr1:146714291-146767443:+,chromodomain_helicase_DNA_binding_protein_1-like,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	MELHO_SKIN	0.2	1	0.3187	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2463	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MELHO_SKIN	1	1	0.2463	TRUE	0	0	0	518	0	FALSE	ACH-000450
MELHO_SKIN	MT-ND4--MT-ND4L	8	29	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1202	0	0.03	1	0.1159	0.4202	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MELHO_SKIN	0.03	1	0.5361	FALSE	344	827	44	306	0	FALSE	ACH-000450
MELHO_SKIN	CHKA--KIAA1549L	13	5	CHKA	12624	chr11:67831992:-	KIAA1549L	30356	chr11:33596248:+	ONLY_REF_SPLICE	YES	134	32	0.12	0.36	0.1884	0.0724	CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,KIAA1549L->KIAA1549-like,chr11:33563618-33695648:+	MELHO_SKIN	0.12	0.36	0.2608	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	HSP90AB1--MT-RNR2	13	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3869	0	0	1	0.1884	0.029	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MELHO_SKIN	0	1	0.2174	FALSE	13	9	0	364	0	FALSE	ACH-000450
MELHO_SKIN	MT-ND4--MT-ND4L	3	40	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1073	0	0.04	1	0.0435	0.5796	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MELHO_SKIN	0.04	1	0.6231	FALSE	344	827	44	306	0	FALSE	ACH-000450
MELHO_SKIN	MT-ND4--MT-ND4L	6	26	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	23	0	0.58	1	0.0869	0.3767	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MELHO_SKIN	0.58	1	0.4636	FALSE	344	826	44	306	0	FALSE	ACH-000450
MELHO_SKIN	SBF2--RBBP6	11	2	SBF2	2279	chr11:10215449:-	RBBP6	71755	chr16:24567629:+	ONLY_REF_SPLICE	YES	4	18	0.76	0.42	0.1594	0.029	{Klijn_CCL:Skin=1},SBF2->SET_binding_factor_2,chr11:9800214-10315754:-,RBBP6->Oncogene{Bushman},chr16:24549014-24584184:+,retinoblastoma_binding_protein_6	MELHO_SKIN	0.42	0.76	0.1884	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	STIM1--C16orf62	10	3	STIM1	2883	chr11:3877639:+	C16orf62	34233	chr16:19576173:+	ONLY_REF_SPLICE	YES	21	2	0.38	0.87	0.1449	0.0435	STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1,C16orf62->chr16:19566562-19718115:+,chromosome_16_open_reading_frame_62	MELHO_SKIN	0.38	0.87	0.1884	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	MT-ND6--MT-TE	9	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.1304	0.0869	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MELHO_SKIN	0.88	1	0.2173	FALSE	499	1288	110	792	0	FALSE	ACH-000450
MELHO_SKIN	MT-ND4--MT-ND4L	3	29	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8692	0	0	1	0.0435	0.4202	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MELHO_SKIN	0	1	0.4637	FALSE	344	827	44	306	0	FALSE	ACH-000450
MELHO_SKIN	MT-ND4--MT-ND4L	3	29	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	42	0	0.43	1	0.0435	0.4202	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MELHO_SKIN	0.43	1	0.4637	FALSE	344	826	44	306	0	FALSE	ACH-000450
MELHO_SKIN	SCARB1--UBC	10	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	1117	21	0.01	0.34	0.1449	0.0145	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	MELHO_SKIN	0.01	0.34	0.1594	TRUE	55	66	6	101	0	FALSE	ACH-000450
MELHO_SKIN	MT-ND4--MT-ND4L	6	15	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	96	0	0.18	1	0.0869	0.2173	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MELHO_SKIN	0.18	1	0.3042	FALSE	344	827	44	306	0	FALSE	ACH-000450
MELHO_SKIN	MT-ND6--MT-TE	9	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1304	0.0435	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MELHO_SKIN	1	1	0.1739	FALSE	499	1288	110	792	0	FALSE	ACH-000450
MELHO_SKIN	MT-ND4--MT-ND4L	4	18	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.058	0.2608	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MELHO_SKIN	0.96	1	0.3188	FALSE	344	821	44	306	0	FALSE	ACH-000450
MELHO_SKIN	MT-ATP6--MT-CO1	8	1	MT-ATP6	1153	chrM:8679:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	11688	18732	0	0	0.1159	0.0145	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MELHO_SKIN	0	0	0.1304	FALSE	183	104	9	328	0	FALSE	ACH-000450
MELHO_SKIN	MT-ATP6--MT-CO1	8	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1159	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MELHO_SKIN	1	1	0.1159	FALSE	183	104	9	328	0	FALSE	ACH-000450
MELHO_SKIN	MT-TA--MT-TC	6	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0869	0.0869	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MELHO_SKIN	1	1	0.1738	FALSE	462	80	0	856	0	FALSE	ACH-000450
MELHO_SKIN	SLC22A18--STIM1	7	2	SLC22A18	3383	chr11:2924719:+	STIM1	27371	chr11:3988782:+	ONLY_REF_SPLICE	YES	250	18	0.03	0.33	0.1014	0.029	SLC22A18->Oncogene{Bushman},chr11:2920951-2946476:+,solute_carrier_family_22_member_18,STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1	MELHO_SKIN	0.03	0.33	0.1304	TRUE	0	0	0	1	0	FALSE	ACH-000450
MELHO_SKIN	SLC22A18AS--USP47	7	2	SLC22A18AS	2157	chr11:2923814:-	USP47	20549	chr11:11941703:+	ONLY_REF_SPLICE	YES	10	37	0.47	0.2	0.1014	0.029	SLC22A18AS->chr11:2909010-2924970:-,solute_carrier_family_22_member_18_antisense,USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47	MELHO_SKIN	0.2	0.47	0.1304	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	ARL6IP1--PKD1P5	7	1	ARL6IP1	2560	chr16:18810077:-	PKD1P5	35359	chr16:18458182:-	INCL_NON_REF_SPLICE	YES	786	7	0.01	0.53	0.1014	0.0145	ARL6IP1->ADP_ribosylation_factor_like_GTPase_6_interacting_protein_1,chr16:18802991-18813000:-,PKD1P5->chr16:18458147-18495797:-,polycystin_1,_transient_receptor_potential_channel_interacting_pseudogene_5	MELHO_SKIN	0.01	0.53	0.1159	TRUE	0	0	0	1	0	FALSE	ACH-000450
MELHO_SKIN	XXbac-BPG252P9.9--TUBBP2	7	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1014	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	MELHO_SKIN	1	1	0.1014	TRUE	0	1	0	48	1	FALSE	ACH-000450
MELHO_SKIN	MT-TA--MT-TC	5	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0724	0.0724	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MELHO_SKIN	1	1	0.1448	FALSE	462	80	0	856	0	FALSE	ACH-000450
MELHO_SKIN	PCSK5--GCAT	6	1	PCSK5	2835	chr9:78547399:+	GCAT	55999	chr22:38208894:+	ONLY_REF_SPLICE	YES	0	91	1	0.07	0.0869	0.0145	PCSK5->chr9:78505560-78977255:+,proprotein_convertase_subtilisin/kexin_type_5,GCAT->chr22:38203912-38213183:+,glycine_C-acetyltransferase	MELHO_SKIN	0.07	1	0.1014	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	C15orf57--CBX3	5	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	18	20	0.33	0.31	0.0724	0.058	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MELHO_SKIN	0.31	0.33	0.1304	TRUE	267	562	48	632	0	FALSE	ACH-000450
MELHO_SKIN	HSPBP1--GRK5	6	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0869	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	MELHO_SKIN	1	1	0.0869	TRUE	1	39	0	134	39	FALSE	ACH-000450
MELHO_SKIN	MT-ND4--MT-ND4L	5	2	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.0724	0.029	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MELHO_SKIN	0.7	1	0.1014	FALSE	344	821	44	306	0	FALSE	ACH-000450
MELHO_SKIN	MT-ND6--MT-TE	3	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.0435	0.1304	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MELHO_SKIN	0.86	1	0.1739	FALSE	499	1288	110	792	0	FALSE	ACH-000450
MELHO_SKIN	C15orf57--CBX3	4	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	18	19	0.31	0.3	0.058	0.058	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MELHO_SKIN	0.3	0.31	0.116	TRUE	267	562	48	632	0	FALSE	ACH-000450
MELHO_SKIN	MT-ND6--MT-TE	3	8	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0435	0.1159	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MELHO_SKIN	0.85	1	0.1594	FALSE	499	1288	110	792	0	FALSE	ACH-000450
MELHO_SKIN	MT-ND6--MT-TE	3	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0435	0.1014	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MELHO_SKIN	0.91	1	0.1449	FALSE	499	1288	110	792	0	FALSE	ACH-000450
MELHO_SKIN	JSRP1--RPS28	4	1	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.058	0.0145	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MELHO_SKIN	0.71	1	0.0725	TRUE	0	1	0	84	1	FALSE	ACH-000450
MELHO_SKIN	LINC00473--PDE10A	4	0	LINC00473	1520	chr6:166401017:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.058	0	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	MELHO_SKIN	1	1	0.058	FALSE	6	13	0	15	0	FALSE	ACH-000450
MELHO_SKIN	MT-ATP6--MT-CO1	4	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MELHO_SKIN	1	1	0.058	FALSE	183	104	9	328	0	FALSE	ACH-000450
MELHO_SKIN	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MELHO_SKIN	1	1	0.058	FALSE	462	80	0	856	0	FALSE	ACH-000450
MELHO_SKIN	RP1-34H18.1--NAV3	4	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.058	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	MELHO_SKIN	1	1	0.058	TRUE	254	575	65	124	0	FALSE	ACH-000450
MELHO_SKIN	MT-ND4--MT-ND4L	3	2	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0.029	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MELHO_SKIN	1	1	0.0725	FALSE	344	821	44	306	0	FALSE	ACH-000450
MELHO_SKIN	MT-ND4--MT-ND4L	3	2	MT-ND4	1047	chrM:10806:+	MT-ND4L	5653	chrM:10744:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0.029	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MELHO_SKIN	1	1	0.0725	FALSE	344	821	44	306	0	FALSE	ACH-000450
MELHO_SKIN	XXbac-BPG252P9.9--TUBBP2	3	2	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	NO	3007	0	0	1	0.0435	0.029	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	MELHO_SKIN	0	1	0.0725	FALSE	0	1	0	48	1	FALSE	ACH-000450
MELHO_SKIN	MT-ND4--MT-ND4L	3	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0435	0.0145	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MELHO_SKIN	1	1	0.058	FALSE	344	821	44	306	0	FALSE	ACH-000450
MELHO_SKIN	XYLT1--TRIM22	3	1	XYLT1	4675	chr16:17451869:-	TRIM22	40863	chr11:5755412:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0435	0.0145	XYLT1->chr16:17195626-17564738:-,xylosyltransferase_1,TRIM22->chr11:5710919-5758319:+,tripartite_motif_containing_22	MELHO_SKIN	0.8	1	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	C15orf57--CBX3	3	0	C15orf57	1082	chr15:40857175:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MELHO_SKIN	1	1	0.0435	TRUE	0	0	0	2	0	FALSE	ACH-000450
MELHO_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MELHO_SKIN	1	1	0.0435	FALSE	499	1288	110	792	0	FALSE	ACH-000450
MELHO_SKIN	NCOR2--UBC	3	0	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0435	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	MELHO_SKIN	1	1	0.0435	TRUE	52	148	13	33	0	FALSE	ACH-000450
MELHO_SKIN	NHP2L1--CRELD2	3	0	NHP2L1	2186	chr22:42084798:-	CRELD2	19113	chr22:50319065:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0435	0	NHP2L1->chr22:42069934-42086508:-,CRELD2->chr22:50311815-50321188:+,cysteine_rich_with_EGF_like_domains_2	MELHO_SKIN	1	1	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0435	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MELHO_SKIN	1	1	0.0435	FALSE	292	1546	117	613	0	FALSE	ACH-000450
MELHO_SKIN	CHKA--KIAA1549L	2	2	CHKA	11517	chr11:67833253:-	KIAA1549L	30356	chr11:33596248:+	ONLY_REF_SPLICE	YES	134	32	0.03	0.11	0.029	0.029	CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,KIAA1549L->KIAA1549-like,chr11:33563618-33695648:+	MELHO_SKIN	0.03	0.11	0.058	TRUE	0	0	0	1	0	FALSE	ACH-000450
MELHO_SKIN	RP11-476K15.1--CTD-2015H3.2	2	2	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	8	0	0.33	1	0.029	0.029	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	MELHO_SKIN	0.33	1	0.058	FALSE	0	46	0	73	0	FALSE	ACH-000450
MELHO_SKIN	SLC22A18--STIM1	2	2	SLC22A18	3383	chr11:2924719:+	STIM1	30663	chr11:4045103:+	ONLY_REF_SPLICE	YES	250	44	0.02	0.08	0.029	0.029	SLC22A18->Oncogene{Bushman},chr11:2920951-2946476:+,solute_carrier_family_22_member_18,STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1	MELHO_SKIN	0.02	0.08	0.058	TRUE	0	0	0	1	0	FALSE	ACH-000450
MELHO_SKIN	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.029	0.0145	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MELHO_SKIN	0.43	1	0.0435	FALSE	125	705	46	456	0	FALSE	ACH-000450
MELHO_SKIN	TULP4--RP11-732M18.3	2	1	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	36	3	0.08	0.5	0.029	0.0145	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	MELHO_SKIN	0.08	0.5	0.0435	TRUE	126	140	6	21	0	FALSE	ACH-000450
MELHO_SKIN	TULP4--RP11-732M18.3	2	1	TULP4	2609	chr6:158735300:+	RP11-732M18.3	28124	chr6:158703295:+	ONLY_REF_SPLICE	NO	36	0	0.08	1	0.029	0.0145	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	MELHO_SKIN	0.08	1	0.0435	TRUE	121	131	5	12	0	FALSE	ACH-000450
MELHO_SKIN	ATP6V1A--NAA50	2	0	ATP6V1A	1095	chr3:113465960:+	NAA50	25711	chr3:113442942:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	LOCAL_INVERSION:+:-:[719],ATP6V1A->ATPase_H+_transporting_V1_subunit_A,chr3:113465866-113530903:+,NAA50->N(alpha)-acetyltransferase_50,_NatE_catalytic_subunit,chr3:113435307-113465147:-	MELHO_SKIN	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	NCOR2--UBC	2	0	NCOR2	11484	chr12:124934361:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	MELHO_SKIN	1	1	0.029	TRUE	12	15	2	11	0	FALSE	ACH-000450
MELHO_SKIN	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MELHO_SKIN	1	1	0.029	TRUE	477	1352	189	275	0	FALSE	ACH-000450
MELHO_SKIN	ELP4--DCDC1	1	3	ELP4	10185	chr11:31671769:+	DCDC1	30980	chr11:31159331:-	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.0145	0.0435	ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4,DCDC1->chr11:30851916-31391357:-,doublecortin_domain_containing_1	MELHO_SKIN	0.2	1	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	CRAMP1L--E4F1	1	2	CRAMP1L	7980	chr16:1691188:+	E4F1	30892	chr16:2278373:+	ONLY_REF_SPLICE	YES	6	31	0.33	0.09	0.0145	0.029	CRAMP1L->chr16:1662326-1727909:+,E4F1->E4F_transcription_factor_1,chr16:2273567-2285743:+	MELHO_SKIN	0.09	0.33	0.0435	TRUE	0	0	0	1	0	TRUE	ACH-000450
MELHO_SKIN	SLC22A18--STIM1	1	2	SLC22A18	5507	chr11:2930586:+	STIM1	27371	chr11:3988782:+	ONLY_REF_SPLICE	YES	267	18	0.01	0.14	0.0145	0.029	SLC22A18->Oncogene{Bushman},chr11:2920951-2946476:+,solute_carrier_family_22_member_18,STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1	MELHO_SKIN	0.01	0.14	0.0435	FALSE	0	0	0	1	0	FALSE	ACH-000450
MELHO_SKIN	EPS15--OSBPL9	1	1	EPS15	1130	chr1:51984871:-	OSBPL9	50149	chr1:52211208:+	ONLY_REF_SPLICE	YES	8	289	0.2	0.01	0.0145	0.0145	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[57851],EPS15->Oncogene{Bushman},chr1:51819935-51985000:-,epidermal_growth_factor_receptor_pathway_substrate_15,OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9	MELHO_SKIN	0.01	0.2	0.029	FALSE	0	0	0	1	0	FALSE	ACH-000450
MELHO_SKIN	FBXW11--NPM1	1	1	FBXW11	1416	chr5:171433462:-	NPM1	28620	chr5:170817055:+	ONLY_REF_SPLICE	YES	37	2660	0.05	0	0.0145	0.0145	GTEx_v2:{count=3;pct=0.03%;dist=Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Uterus=1},FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	MELHO_SKIN	0	0.05	0.029	FALSE	0	0	0	1	0	FALSE	ACH-000450
MELHO_SKIN	PCSK5--GCAT	1	1	PCSK5	2835	chr9:78547399:+	GCAT	54868	chr22:38206034:+	ONLY_REF_SPLICE	YES	0	80	1	0.02	0.0145	0.0145	PCSK5->chr9:78505560-78977255:+,proprotein_convertase_subtilisin/kexin_type_5,GCAT->chr22:38203912-38213183:+,glycine_C-acetyltransferase	MELHO_SKIN	0.02	1	0.029	TRUE	0	0	0	1	0	FALSE	ACH-000450
MELHO_SKIN	ST3GAL6-AS1--DCBLD2	1	1	ST3GAL6-AS1	3731	chr3:98434220:-	DCBLD2	16999	chr3:98539132:-	ONLY_REF_SPLICE	YES	40	78	0.05	0.03	0.0145	0.0145	LOCAL_REARRANGEMENT:-:[63290],ST3GAL6-AS1->ST3GAL6_antisense_RNA_1,chr3:98433174-98451495:-,DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2	MELHO_SKIN	0.03	0.05	0.029	TRUE	0	0	0	1	0	FALSE	ACH-000450
MELHO_SKIN	ST6GALNAC3--PIGK	1	1	ST6GALNAC3	3771	chr1:76878102:+	PIGK	26341	chr1:77588044:-	ONLY_REF_SPLICE	YES	58	128	0.03	0.02	0.0145	0.0145	GTEx_v2:{count=2;pct=0.02%;dist=Heart_-_Left_Ventricle=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},ST6GALNAC3->ST6_N-acetylgalactosaminide_alpha-2,6-sialyltransferase_3,chr1:76540404-77100286:+,PIGK->chr1:77554675-77685115:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_K	MELHO_SKIN	0.02	0.03	0.029	TRUE	0	0	0	1	0	FALSE	ACH-000450
HCC1588_LUNG	MT-TA--MT-TN	128	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2629	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1588_LUNG	1	1	1.2629	FALSE	369	2501	205	193	0	FALSE	ACH-001078
HCC1588_LUNG	IQGAP1--FAM174B	76	12	IQGAP1	2279	chr15:90934105:+	FAM174B	56743	chr15:93173575:-	ONLY_REF_SPLICE	YES	112	4	0.44	0.96	0.7499	0.1184	IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,FAM174B->chr15:93160673-93353114:-,family_with_sequence_similarity_174_member_B	HCC1588_LUNG	0.44	0.96	0.8683	TRUE	0	0	0	2	0	TRUE	ACH-001078
HCC1588_LUNG	MT-TA--MT-TC	61	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6019	0.0691	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1588_LUNG	1	1	0.671	FALSE	462	80	0	856	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	11	203	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	30	0	0.88	1	0.1085	2.0029	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.88	1	2.1114	FALSE	344	826	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	TIMM23B--LINC00843	59	9	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5821	0.0888	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1588_LUNG	1	1	0.6709	TRUE	508	994	45	981	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	10	203	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	22	1	0.91	1	0.0987	2.0029	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.91	1	2.1016	FALSE	344	826	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	24	142	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	4473	2	0.04	0.99	0.2368	1.4011	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.04	0.99	1.6379	FALSE	344	827	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	4	209	MT-ND4	1519	chrM:11278:+	MT-ND4L	5394	chrM:10485:+	INCL_NON_REF_SPLICE	YES	383	0	0.36	1	0.0395	2.0621	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.36	1	2.1016	FALSE	344	827	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	4	208	MT-ND4	1724	chrM:11483:+	MT-ND4L	5482	chrM:10573:+	INCL_NON_REF_SPLICE	YES	2667	0	0.07	1	0.0395	2.0523	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.07	1	2.0918	FALSE	344	827	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	3	200	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	22	2	0.9	0.99	0.0296	1.9733	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.9	0.99	2.0029	FALSE	344	826	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	4	196	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	19	2	0.91	0.99	0.0395	1.9339	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.91	0.99	1.9734	FALSE	344	826	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	3	197	MT-ND4	1105	chrM:10864:+	MT-ND4L	5459	chrM:10550:+	INCL_NON_REF_SPLICE	YES	16	0	0.93	1	0.0296	1.9437	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.93	1	1.9733	FALSE	344	826	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND5--MT-ATP8	43	15	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3511	23	0.02	0.72	0.4243	0.148	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0.02	0.72	0.5723	FALSE	43	37	8	105	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	8	140	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	NO	34	2	0.81	0.99	0.0789	1.3813	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.81	0.99	1.4602	FALSE	344	826	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-TA--MT-TN	15	105	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.148	1.036	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1588_LUNG	1	1	1.184	FALSE	369	2501	205	193	0	FALSE	ACH-001078
HCC1588_LUNG	OR51S1--TP53I11	41	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4045	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HCC1588_LUNG	1	1	0.4045	TRUE	402	216	10	229	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	3	147	MT-ND4	1475	chrM:11234:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	208	2	0.42	0.99	0.0296	1.4504	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.42	0.99	1.48	FALSE	344	827	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND6--MT-TE	39	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3848	0.0296	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1588_LUNG	1	1	0.4144	FALSE	499	1288	110	792	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	3	141	MT-ND4	1466	chrM:11225:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	191	2	0.43	0.99	0.0296	1.3912	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.43	0.99	1.4208	FALSE	344	827	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	3	139	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	10	2	0.93	0.99	0.0296	1.3715	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.93	0.99	1.4011	FALSE	344	821	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	3	138	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	18	2	0.89	0.99	0.0296	1.3616	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.89	0.99	1.3912	FALSE	344	826	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-TA--MT-TN	18	53	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1776	0.5229	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1588_LUNG	1	1	0.7005	FALSE	369	2501	205	193	0	FALSE	ACH-001078
HCC1588_LUNG	MT-TA--MT-TN	12	77	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1184	0.7597	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1588_LUNG	1	1	0.8781	FALSE	369	2501	205	193	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	4	103	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	25	0	0.81	1	0.0395	1.0163	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.81	1	1.0558	FALSE	344	826	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	28	2	MT-ND4	1151	chrM:10910:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	NO	8138	260	0	0.1	0.2763	0.0197	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	0.1	0.296	FALSE	230	193	14	283	0	FALSE	ACH-001078
HCC1588_LUNG	LUZP1--TMCO4	27	4	LUZP1	2577	chr1:23495259:-	TMCO4	38383	chr1:20009937:-	ONLY_REF_SPLICE	YES	0	31	1	0.5	0.2664	0.0395	LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1,TMCO4->chr1:20008706-20126438:-,transmembrane_and_coiled-coil_domains_4	HCC1588_LUNG	0.5	1	0.3059	TRUE	0	0	0	2	0	TRUE	ACH-001078
HCC1588_LUNG	MT-ND5--MT-ATP8	24	10	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5163	74	0.01	0.31	0.2368	0.0987	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0.01	0.31	0.3355	FALSE	43	37	8	105	0	FALSE	ACH-001078
HCC1588_LUNG	ASS1--MT-CO3	25	3	ASS1	7359	chr9:133339534:+	MT-CO3	21796	chrM:9549:+	INCL_NON_REF_SPLICE	YES	2873	17069	0.01	0	0.2467	0.0296	ASS1->argininosuccinate_synthase_1,chr9:133320316-133376661:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HCC1588_LUNG	0	0.01	0.2763	FALSE	0	0	0	12	0	FALSE	ACH-001078
HCC1588_LUNG	MT-TA--MT-TN	17	34	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1677	0.3355	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1588_LUNG	1	1	0.5032	FALSE	369	2501	205	193	0	FALSE	ACH-001078
HCC1588_LUNG	TIMM23--RP11-464F9.1	25	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2467	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC1588_LUNG	1	1	0.2467	TRUE	519	3926	326	965	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	12	47	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	383	0	0.13	1	0.1184	0.4637	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.13	1	0.5821	FALSE	344	827	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND5--MT-ATP8	17	21	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.1677	0.2072	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0.9	1	0.3749	FALSE	43	37	8	105	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	20	8	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	11299	0	0	1	0.1973	0.0789	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	0	1	0.2762	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND6--MT-TE	21	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2072	0.0296	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1588_LUNG	1	1	0.2368	FALSE	499	1288	110	792	0	FALSE	ACH-001078
HCC1588_LUNG	RP11-96H19.1--RP11-446N19.1	19	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.91	1	0.1875	0.0987	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1588_LUNG	0.91	1	0.2862	FALSE	515	4851	409	746	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	6	52	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	10	1	0.85	0.98	0.0592	0.5131	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.85	0.98	0.5723	FALSE	344	821	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	11	32	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	219	0	0.16	1	0.1085	0.3157	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.16	1	0.4242	FALSE	344	827	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND5--MT-ATP8	13	23	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1283	0.2269	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	1	1	0.3552	FALSE	43	37	8	105	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	9	32	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	447	0	0.08	1	0.0888	0.3157	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.08	1	0.4045	FALSE	344	827	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-TA--MT-TN	17	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1677	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1588_LUNG	1	1	0.1677	FALSE	369	2501	205	193	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	16	2	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	8138	0	0	1	0.1579	0.0197	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	1	0.1776	FALSE	230	193	14	283	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	4	49	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	4	1	0.93	0.98	0.0395	0.4835	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.93	0.98	0.523	FALSE	344	821	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-TA--MT-TN	16	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1579	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1588_LUNG	1	1	0.1579	FALSE	369	2501	205	193	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	4	47	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	7630	0	0.01	1	0.0395	0.4637	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.01	1	0.5032	FALSE	344	827	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND6--MT-TE	12	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.1184	0.148	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1588_LUNG	0.9	1	0.2664	FALSE	499	1288	110	792	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	9	26	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	27	0	0.56	1	0.0888	0.2565	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.56	1	0.3453	FALSE	344	826	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-TA--MT-TC	14	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1381	0.0493	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1588_LUNG	1	1	0.1874	FALSE	462	80	0	856	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	7	32	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	25	0	0.61	1	0.0691	0.3157	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.61	1	0.3848	FALSE	344	826	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-TA--MT-TN	3	47	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0.4637	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1588_LUNG	1	1	0.4933	FALSE	369	2501	205	193	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	14	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	10400	18	0	0.47	0.1381	0.0197	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	0.47	0.1578	FALSE	230	193	14	283	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	13	5	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	11299	8849	0	0	0.1283	0.0493	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	0	0	0.1776	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	SAMD5--SASH1	14	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	17	1	0.47	0.94	0.1381	0.0099	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HCC1588_LUNG	0.47	0.94	0.148	TRUE	53	396	64	110	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	13	4	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	10820	8766	0	0	0.1283	0.0395	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	0	0	0.1678	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	6	32	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6528	0	0.01	1	0.0592	0.3157	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.01	1	0.3749	FALSE	344	827	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	13	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13007	0	0	1	0.1283	0.0296	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	1	0.1579	FALSE	231	217	16	283	0	FALSE	ACH-001078
HCC1588_LUNG	HSP90AB1--MT-RNR2	13	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1333	0	0.01	1	0.1283	0.0197	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	0.01	1	0.148	FALSE	13	9	0	364	0	FALSE	ACH-001078
HCC1588_LUNG	MT-TA--MT-TN	5	34	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0.3355	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1588_LUNG	1	1	0.3848	FALSE	369	2501	205	193	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	4	37	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	14	0	0.75	1	0.0395	0.3651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.75	1	0.4046	FALSE	344	826	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	5	32	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	34	0	0.52	1	0.0493	0.3157	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.52	1	0.365	FALSE	344	826	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	LRBA--SH3D19	12	3	LRBA	38254	chr4:151682935:-	SH3D19	88953	chr4:152070713:-	ONLY_REF_SPLICE	YES	42	145	0.26	0.09	0.1184	0.0296	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},YOSHIHARA_TCGA_num_samples[BLCA:1|HNSC:1|LUSC:1],{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[87024],LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,SH3D19->SH3_domain_containing_19,chr4:152023903-152246784:-	HCC1588_LUNG	0.09	0.26	0.148	TRUE	0	4	0	2	4	TRUE	ACH-001078
HCC1588_LUNG	C15orf57--CBX3	11	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	30	63	0.36	0.21	0.1085	0.0592	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1588_LUNG	0.21	0.36	0.1677	TRUE	267	562	48	632	0	FALSE	ACH-001078
HCC1588_LUNG	C15orf57--CBX3	10	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	31	61	0.35	0.22	0.0987	0.0691	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1588_LUNG	0.22	0.35	0.1678	TRUE	267	562	48	632	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	11	3	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	14039	0	0	1	0.1085	0.0296	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	1	0.1381	FALSE	231	217	16	283	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-CO1	10	6	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11853	20600	0	0	0.0987	0.0592	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0	0.1579	FALSE	183	104	9	328	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-CO1	10	5	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9734	20750	0	0	0.0987	0.0493	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0	0.148	FALSE	183	104	9	328	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND5--MT-ATP8	7	15	MT-ND5	2514	chrM:13850:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2531	74	0.01	0.23	0.0691	0.148	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0.01	0.23	0.2171	FALSE	43	37	8	105	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	10	2	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	8531	0	0	1	0.0987	0.0197	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	0	1	0.1184	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	4	25	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	7	1	0.81	0.97	0.0395	0.2467	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.81	0.97	0.2862	FALSE	344	821	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND5--MT-ATP8	4	25	MT-ND5	2795	chrM:14131:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0.2467	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	1	1	0.2862	FALSE	43	37	8	105	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	9	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11383	23	0	0.34	0.0888	0.0296	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	0.34	0.1184	FALSE	231	205	14	283	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-CO1	6	14	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3652	21078	0.01	0	0.0592	0.1381	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0.01	0.1973	FALSE	183	104	9	328	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	9	2	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	9375	0	0	1	0.0888	0.0197	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	0	1	0.1085	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	9	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10177	23	0	0.32	0.0888	0.0197	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	0.32	0.1085	FALSE	230	198	14	283	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	6	11	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	12012	0	0	1	0.0592	0.1085	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	1	0.1677	FALSE	231	217	16	283	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	7	7	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11804	73	0	0.16	0.0691	0.0691	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	0.16	0.1382	FALSE	231	217	16	283	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND6--MT-TE	3	23	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0.2269	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1588_LUNG	1	1	0.2565	FALSE	499	1288	110	792	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND5--MT-ATP8	4	18	MT-ND5	2290	chrM:13626:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2967	0	0.01	1	0.0395	0.1776	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0.01	1	0.2171	FALSE	43	37	8	105	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	6	9	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11249	73	0	0.17	0.0592	0.0888	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	0.17	0.148	FALSE	231	215	16	283	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	5	12	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	32	0	0.35	1	0.0493	0.1184	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.35	1	0.1677	FALSE	344	827	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	ACTN4--MT-CO1	7	3	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	526	20282	0.02	0	0.0691	0.0296	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0.02	0.0987	FALSE	0	0	0	30	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	7	3	MT-ATP6	1555	chrM:9081:+	MT-RNR2	5408	chrM:2397:+	INCL_NON_REF_SPLICE	YES	3652	10325	0	0	0.0691	0.0296	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	0	0	0.0987	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND5--MT-ATP8	3	19	MT-ND5	2243	chrM:13579:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	NO	3511	0	0.01	1	0.0296	0.1875	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0.01	1	0.2171	FALSE	43	37	8	105	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	7	2	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	10785	8792	0	0	0.0691	0.0197	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	0	0	0.0888	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND6--MT-TE	3	18	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0296	0.1776	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1588_LUNG	0.95	1	0.2072	FALSE	499	1288	110	792	0	FALSE	ACH-001078
HCC1588_LUNG	ADAP1--SUN1	7	1	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	549	188	0.01	0.04	0.0691	0.0099	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	HCC1588_LUNG	0.01	0.04	0.079	FALSE	16	22	0	27	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	6	5	MT-ATP6	1200	chrM:8726:+	MT-RNR2	5307	chrM:2296:+	INCL_NON_REF_SPLICE	YES	14357	9673	0	0	0.0592	0.0493	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	0	0	0.1085	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	5	9	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11812	73	0	0.16	0.0493	0.0888	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	0.16	0.1381	FALSE	231	217	16	283	0	FALSE	ACH-001078
HCC1588_LUNG	APP--MT-ND2	6	3	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	708	6279	0.01	0	0.0592	0.0296	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC1588_LUNG	0	0.01	0.0888	FALSE	0	1	0	51	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	5	7	MT-ATP6	1516	chrM:9042:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	YES	6249	8721	0	0	0.0493	0.0691	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	0	0	0.1184	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	4	11	MT-ATP6	1303	chrM:8829:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	16812	0	0	1	0.0395	0.1085	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	0	1	0.148	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	6	3	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	13031	0	0	1	0.0592	0.0296	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	1	0.0888	FALSE	231	217	16	283	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	6	3	MT-ND4	1651	chrM:11410:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	12736	563	0	0.02	0.0592	0.0296	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	0.02	0.0888	FALSE	231	217	16	283	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-CO1	5	6	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	11779	18823	0	0	0.0493	0.0592	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0	0.1085	FALSE	183	104	9	328	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-CO1	3	14	MT-ATP6	1560	chrM:9086:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	2950	20600	0.01	0	0.0296	0.1381	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0.01	0.1677	FALSE	183	104	9	328	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-CO1	3	14	MT-ATP6	1477	chrM:9003:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	NO	8385	18614	0	0	0.0296	0.1381	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0	0.1677	FALSE	183	104	9	328	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	6	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10361	73	0	0.1	0.0592	0.0197	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	0.1	0.0789	FALSE	230	198	14	283	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND5--MT-ATP8	3	14	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	3828	2	0	0.89	0.0296	0.1381	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	0.89	0.1677	FALSE	43	37	8	105	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-CO1	3	13	MT-ATP6	1598	chrM:9124:+	MT-CO1	5381	chrM:6603:+	INCL_NON_REF_SPLICE	NO	8	20312	0.67	0	0.0296	0.1283	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0.67	0.1579	FALSE	183	104	9	328	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-CO1	3	13	MT-ATP6	1408	chrM:8934:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	12150	21078	0	0	0.0296	0.1283	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0	0.1579	FALSE	183	104	9	328	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	6	1	MT-ATP6	1244	chrM:8770:+	MT-RNR2	5846	chrM:2835:+	INCL_NON_REF_SPLICE	NO	15332	7009	0	0	0.0592	0.0099	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	0	0	0.0691	FALSE	62	15	1	57	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	4	9	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	11812	191	0	0.06	0.0395	0.0888	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	0.06	0.1283	FALSE	231	217	16	283	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-CO1	5	4	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9656	20600	0	0	0.0493	0.0395	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0	0.0888	FALSE	183	104	9	328	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-CO1	5	4	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	9537	20260	0	0	0.0493	0.0395	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0	0.0888	FALSE	183	104	9	328	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	6	0	MT-ATP6	1132	chrM:8658:+	MT-RNR2	5436	chrM:2425:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	1	1	0.0592	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	5	4	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	9916	0	0	1	0.0493	0.0395	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	0	1	0.0888	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	5	4	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	12995	0	0	1	0.0493	0.0395	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	1	0.0888	FALSE	231	217	16	283	0	FALSE	ACH-001078
HCC1588_LUNG	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1588_LUNG	1	1	0.0592	FALSE	462	80	0	856	0	FALSE	ACH-001078
HCC1588_LUNG	MT-TA--MT-TN	6	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1588_LUNG	1	1	0.0592	FALSE	369	2501	205	193	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-CO1	5	3	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9380	20600	0	0	0.0493	0.0296	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0	0.0789	FALSE	183	104	9	328	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	3	11	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4282	73	0	0.16	0.0296	0.1085	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	0.16	0.1381	FALSE	218	210	16	281	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	3	11	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	12747	0	0	1	0.0296	0.1085	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	1	0.1381	FALSE	231	217	16	283	0	FALSE	ACH-001078
HCC1588_LUNG	HSP90AB1--MT-RNR2	5	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1346	0	0.01	1	0.0493	0.0197	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	0.01	1	0.069	FALSE	13	9	0	364	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-CO1	3	10	MT-ATP6	1221	chrM:8747:+	MT-CO1	5314	chrM:6536:+	INCL_NON_REF_SPLICE	YES	14631	19748	0	0	0.0296	0.0987	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0	0.1283	FALSE	183	104	9	328	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1152	chrM:10911:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	8161	17	0	0.29	0.0493	0.0197	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	0.29	0.069	FALSE	230	193	14	283	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND5--MT-ATP8	4	6	MT-ND5	1575	chrM:12911:+	MT-ATP8	5816	chrM:8369:+	INCL_NON_REF_SPLICE	YES	3491	0	0	1	0.0395	0.0592	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	1	0.0987	FALSE	42	36	7	104	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND5--MT-ATP8	4	5	MT-ND5	1628	chrM:12964:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	4190	0	0	1	0.0395	0.0493	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	1	0.0888	FALSE	42	36	7	104	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	4	4	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	13603	0	0	1	0.0395	0.0395	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	1	0.079	FALSE	231	217	16	283	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND5--MT-ATP8	3	8	MT-ND5	1969	chrM:13305:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4394	23	0	0.32	0.0296	0.0789	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	0.32	0.1085	FALSE	43	37	8	105	0	FALSE	ACH-001078
HCC1588_LUNG	RP11-96H19.1--RP11-446N19.1	2	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0197	0.1184	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1588_LUNG	0.93	1	0.1381	FALSE	467	2173	244	435	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-CO1	4	3	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	9046	18993	0	0	0.0395	0.0296	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0	0.0691	FALSE	183	104	9	328	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	3	7	MT-ATP6	1295	chrM:8821:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	16868	9177	0	0	0.0296	0.0691	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	0	0	0.0987	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	4	3	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	12705	0	0	1	0.0395	0.0296	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	1	0.0691	FALSE	231	205	14	283	0	FALSE	ACH-001078
HCC1588_LUNG	C15orf57--CBX3	3	6	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	30	62	0.23	0.13	0.0296	0.0592	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1588_LUNG	0.13	0.23	0.0888	TRUE	267	562	48	632	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-CO1	3	6	MT-ATP6	1132	chrM:8658:+	MT-CO1	5255	chrM:6477:+	INCL_NON_REF_SPLICE	YES	9924	18116	0	0	0.0296	0.0592	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0	0.0888	FALSE	183	104	9	328	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-CO1	3	6	MT-ATP6	1158	chrM:8684:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	11853	19088	0	0	0.0296	0.0592	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0	0.0888	FALSE	183	104	9	328	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	4	2	MT-ATP6	1143	chrM:8669:+	MT-RNR2	5305	chrM:2294:+	INCL_NON_REF_SPLICE	YES	10695	9577	0	0	0.0395	0.0197	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	0	0	0.0592	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	10304	0	0	1	0.0395	0.0197	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	1	0.0592	FALSE	230	197	14	283	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11220	0	0	1	0.0296	0.0592	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	1	0.0888	FALSE	231	217	16	283	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND6--MT-TE	3	6	MT-ND6	1149	chrM:14525:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	3	0	0.75	1	0.0296	0.0592	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1588_LUNG	0.75	1	0.0888	FALSE	499	1288	110	792	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND5--MT-ATP8	3	5	MT-ND5	1701	chrM:13037:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	3454	506	0	0.02	0.0296	0.0493	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	0.02	0.0789	FALSE	42	36	7	104	0	FALSE	ACH-001078
HCC1588_LUNG	MT-TA--MT-TC	3	5	MT-TA	1054	chrM:5602:-	MT-TC	4006	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0.0493	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1588_LUNG	1	1	0.0789	FALSE	462	80	0	856	0	FALSE	ACH-001078
HCC1588_LUNG	NRIP1--AF127936.7	4	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.42	1	0.0395	0.0099	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1588_LUNG	0.42	1	0.0494	FALSE	164	806	69	479	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-CO1	3	4	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	9656	18214	0	0	0.0296	0.0395	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0	0.0691	FALSE	183	104	9	328	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	1	1	0.0395	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	1	1	0.0395	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1125	chrM:8651:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	1	1	0.0395	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	MT-TA--MT-TN	4	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1588_LUNG	1	1	0.0395	FALSE	369	2501	205	193	0	FALSE	ACH-001078
HCC1588_LUNG	MT-TA--MT-TN	4	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1588_LUNG	1	1	0.0395	FALSE	369	2501	205	193	0	FALSE	ACH-001078
HCC1588_LUNG	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0395	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1588_LUNG	1	1	0.0395	FALSE	292	1546	117	613	0	FALSE	ACH-001078
HCC1588_LUNG	RP11-114H23.1--RP11-114H23.2	4	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0395	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC1588_LUNG	1	1	0.0395	FALSE	81	155	12	160	0	FALSE	ACH-001078
HCC1588_LUNG	ACTN4--MT-CO1	3	3	ACTN4	15629	chr19:39214923:+	MT-CO1	26353	chrM:6538:+	INCL_NON_REF_SPLICE	YES	524	19904	0.01	0	0.0296	0.0296	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0.01	0.0592	FALSE	0	0	0	30	0	FALSE	ACH-001078
HCC1588_LUNG	ACTN4--MT-CO1	3	3	ACTN4	15641	chr19:39214935:+	MT-CO1	26365	chrM:6550:+	INCL_NON_REF_SPLICE	YES	494	20675	0.01	0	0.0296	0.0296	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0.01	0.0592	FALSE	0	0	0	30	0	FALSE	ACH-001078
HCC1588_LUNG	ASS1--MT-CO3	3	3	ASS1	7358	chr9:133339533:+	MT-CO3	21795	chrM:9548:+	INCL_NON_REF_SPLICE	YES	2869	17067	0	0	0.0296	0.0296	ASS1->argininosuccinate_synthase_1,chr9:133320316-133376661:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HCC1588_LUNG	0	0	0.0592	FALSE	0	0	0	12	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	3	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	1	2	0.86	0.75	0.0296	0.0296	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	0.75	0.86	0.0592	FALSE	344	821	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND5--MT-ATP8	3	3	MT-ND5	1197	chrM:12533:+	MT-ATP8	5867	chrM:8420:+	INCL_NON_REF_SPLICE	YES	4855	0	0	1	0.0296	0.0296	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	1	0.0592	FALSE	41	30	6	101	0	FALSE	ACH-001078
HCC1588_LUNG	JUP--MT-CO3	3	2	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	521	17029	0.01	0	0.0296	0.0197	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HCC1588_LUNG	0	0.01	0.0493	FALSE	0	0	0	33	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1221	chrM:8747:+	MT-CO1	5608	chrM:6830:+	INCL_NON_REF_SPLICE	NO	14631	21407	0	0	0.0296	0.0197	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1588_LUNG	0	0	0.0493	FALSE	183	104	9	328	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	9914	9169	0	0	0.0296	0.0197	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1588_LUNG	0	0	0.0493	FALSE	63	17	1	58	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10332	23	0	0.18	0.0296	0.0197	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1588_LUNG	0	0.18	0.0493	FALSE	230	193	14	283	0	FALSE	ACH-001078
HCC1588_LUNG	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.0099	0.0987	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1588_LUNG	0.79	1	0.1086	FALSE	275	511	55	178	0	FALSE	ACH-001078
HCC1588_LUNG	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.0099	0.0987	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1588_LUNG	0.79	1	0.1086	FALSE	407	2205	196	549	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	1	1	0.0296	FALSE	344	821	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1588_LUNG	1	1	0.0296	FALSE	344	821	44	306	0	FALSE	ACH-001078
HCC1588_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1588_LUNG	1	1	0.0296	FALSE	499	1288	110	792	0	FALSE	ACH-001078
HCC1588_LUNG	MT-TA--MT-TC	3	0	MT-TA	1029	chrM:5627:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1588_LUNG	1	1	0.0296	FALSE	462	80	0	856	0	FALSE	ACH-001078
HCC1588_LUNG	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.33	1	0.0197	0.0099	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1588_LUNG	0.33	1	0.0296	FALSE	125	705	46	456	0	FALSE	ACH-001078
HCC1588_LUNG	CHD2--CHMP1A	2	0	CHD2	6529	chr15:93444529:+	CHMP1A	64627	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Thyroid=[count:2=pct:1.1],Brain=[count:1=pct:0.2]},GTEx_v2:{count=10;pct=0.12%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Whole_Blood=2,Breast_-_Mammary_Tissue=1,Brain_-_Hypothalamus=1,Thyroid=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HCC1588_LUNG	1	1	0.0197	TRUE	2	11	0	5	0	FALSE	ACH-001078
HCC1588_LUNG	URGCP--TLK1	2	0	URGCP	3924	chr7:43946161:-	TLK1	24213	chr2:171974367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	URGCP->chr7:43915493-43966010:-,upregulator_of_cell_proliferation,TLK1->chr2:171847333-172087824:-,tousled_like_kinase_1	HCC1588_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-001078
HCC1588_LUNG	WDFY2--FOXO1	2	0	WDFY2	3459	chr13:52249379:+	FOXO1	22874	chr13:41134997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	WDFY2->WD_repeat_and_FYVE_domain_containing_2,chr13:52158644-52336171:+,FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1	HCC1588_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-001078
HCC1588_LUNG	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	25741	chr7:878435:+	ONLY_REF_SPLICE	YES	549	175	0	0.01	0.0099	0.0099	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	HCC1588_LUNG	0	0.01	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-001078
HCC1588_LUNG	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	48590	chr7:925693:+	ONLY_REF_SPLICE	NO	549	0	0	1	0.0099	0.0099	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	HCC1588_LUNG	0	1	0.0198	FALSE	0	4	0	9	2	FALSE	ACH-001078
HCC1588_LUNG	GGACT--PCCA	1	1	GGACT	3102	chr13:101236079:-	PCCA	34208	chr13:101020726:+	ONLY_REF_SPLICE	YES	33	74	0.06	0.03	0.0099	0.0099	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	HCC1588_LUNG	0.03	0.06	0.0198	TRUE	0	0	0	2	0	FALSE	ACH-001078
HCC1588_LUNG	GGACT--PCCA	1	1	GGACT	3102	chr13:101236079:-	PCCA	40151	chr13:101179929:+	ONLY_REF_SPLICE	YES	33	552	0.06	0	0.0099	0.0099	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	HCC1588_LUNG	0	0.06	0.0198	FALSE	7	15	0	10	0	FALSE	ACH-001078
CAKI2_KIDNEY	UBTD2--NSG2	127	37	UBTD2	1476	chr5:171710600:-	NSG2	21173	chr5:173669685:+	ONLY_REF_SPLICE	YES	42	0	0.8	1	1.2005	0.3498	UBTD2->chr5:171636644-171711075:-,ubiquitin_domain_containing_2,NSG2->chr5:173472607-173670504:+	CAKI2_KIDNEY	0.8	1	1.5503	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	CAPZA2--MET	95	13	CAPZA2	3371	chr7:116502704:+	MET	46708	chr7:116422042:+	ONLY_REF_SPLICE	YES	71	442	0.6	0.2	0.898	0.1229	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	CAKI2_KIDNEY	0.2	0.6	1.0209	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	MIOS--RPA3-AS1	74	40	MIOS	2252	chr7:7607754:+	RPA3-AS1	30878	chr7:7916912:+	ONLY_REF_SPLICE	YES	17	25	0.87	0.82	0.6995	0.3781	NEIGHBORS[31782],MIOS->chr7:7606503-7648560:+,missing_oocyte,_meiosis_regulator,_homolog_(Drosophila),RPA3-AS1->chr7:7680342-8043689:+	CAKI2_KIDNEY	0.82	0.87	1.0776	FALSE	0	0	0	1	0	FALSE	ACH-000234
CAKI2_KIDNEY	PCMT1--PDSS2	59	40	PCMT1	1514	chr6:150071092:+	PDSS2	25591	chr6:107515058:-	ONLY_REF_SPLICE	YES	219	35	0.31	0.74	0.5577	0.3781	PCMT1->chr6:150070579-150132556:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase,PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2	CAKI2_KIDNEY	0.31	0.74	0.9358	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	TIMM23B--LINC00843	66	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.6239	0.104	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAKI2_KIDNEY	0.99	1	0.7279	TRUE	508	994	45	981	0	FALSE	ACH-000234
CAKI2_KIDNEY	VCAN--XRCC4	54	17	VCAN	23911	chr5:82850857:+	XRCC4	41394	chr5:82648944:+	ONLY_REF_SPLICE	YES	274	20	0.21	0.78	0.5104	0.1607	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Artery_-_Coronary=1},VCAN->Oncogene{Bushman},chr5:82767284-82878122:+,versican,XRCC4->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_4,chr5:82373317-82649606:+	CAKI2_KIDNEY	0.21	0.78	0.6711	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	DST--SDCBP	50	18	DST	6509	chr6:56707853:-	SDCBP	133242	chr8:59477578:+	ONLY_REF_SPLICE	YES	25	17	0.73	0.8	0.4726	0.1701	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein	CAKI2_KIDNEY	0.73	0.8	0.6427	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	PCMT1--PDSS2	31	75	PCMT1	1514	chr6:150071092:+	PDSS2	22227	chr6:107533486:-	ONLY_REF_SPLICE	YES	219	12	0.33	0.9	0.293	0.709	PCMT1->chr6:150070579-150132556:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase,PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2	CAKI2_KIDNEY	0.33	0.9	1.002	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	CAPZA2--MET	45	7	CAPZA2	3371	chr7:116502704:+	MET	48984	chr7:116435709:+	ONLY_REF_SPLICE	YES	71	581	0.42	0.08	0.4254	0.0662	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	CAKI2_KIDNEY	0.08	0.42	0.4916	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	MT-ND5--MT-ATP8	41	10	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2548	32	0.02	0.61	0.3876	0.0945	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAKI2_KIDNEY	0.02	0.61	0.4821	FALSE	43	37	8	105	0	FALSE	ACH-000234
CAKI2_KIDNEY	ARHGAP26--RNF130	37	13	ARHGAP26	20298	chr5:142393681:+	RNF130	58821	chr5:179390564:-	ONLY_REF_SPLICE	YES	17	68	0.75	0.42	0.3498	0.1229	{Klijn_CCL:Kidney=1},ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+,RNF130->chr5:179338651-179499118:-,ring_finger_protein_130	CAKI2_KIDNEY	0.42	0.75	0.4727	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	TIMM23--RP11-464F9.1	37	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	148	1	0.2	0.97	0.3498	0.0095	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAKI2_KIDNEY	0.2	0.97	0.3593	TRUE	519	3926	326	965	0	FALSE	ACH-000234
CAKI2_KIDNEY	RP11-123O10.4--GRIP1	35	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3308	0.0756	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAKI2_KIDNEY	1	1	0.4064	FALSE	416	2512	207	587	0	FALSE	ACH-000234
CAKI2_KIDNEY	GLYR1--SMIM22	33	5	GLYR1	15773	chr16:4861171:-	SMIM22	24375	chr16:4844953:+	ONLY_REF_SPLICE	YES	89	0	0.3	1	0.3119	0.0473	LOCAL_INVERSION:-:+:[6712],GLYR1->chr16:4853204-4897343:-,glyoxylate_reductase_1_homolog,SMIM22->chr16:4838398-4846492:+,small_integral_membrane_protein_22	CAKI2_KIDNEY	0.3	1	0.3592	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	DOCK7--IGKV1OR10-1	31	8	DOCK7	13492	chr1:63084377:-	IGKV1OR10-1	57581	chr10:42680942:+	ONLY_REF_SPLICE	YES	10	0	0.8	1	0.293	0.0756	DOCK7->chr1:62920399-63153969:-,dedicator_of_cytokinesis_7,IGKV1OR10-1->chr10:42680787-42681239:+,immunoglobulin_kappa_variable_1/OR10-1_(pseudogene)	CAKI2_KIDNEY	0.8	1	0.3686	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	ARHGAP26--RNF130	30	6	ARHGAP26	20298	chr5:142393681:+	RNF130	60762	chr5:179382669:-	ONLY_REF_SPLICE	YES	17	31	0.68	0.54	0.2836	0.0567	{Klijn_CCL:Kidney=1},ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+,RNF130->chr5:179338651-179499118:-,ring_finger_protein_130	CAKI2_KIDNEY	0.54	0.68	0.3403	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	HSP90AB1--MT-RNR2	31	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2347	0	0.01	1	0.293	0.0095	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	0.01	1	0.3025	FALSE	13	9	0	364	0	FALSE	ACH-000234
CAKI2_KIDNEY	HSP90AB1--MT-RNR2	27	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2301	0	0.01	1	0.2552	0.0095	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	0.01	1	0.2647	FALSE	13	9	0	364	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ND6--MT-TE	25	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2363	0.0378	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAKI2_KIDNEY	0.97	1	0.2741	FALSE	499	1288	110	792	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-TA--MT-TC	22	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.208	0.0189	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAKI2_KIDNEY	1	1	0.2269	FALSE	462	80	0	856	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ND5--MT-ATP8	16	25	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	9	0	0.82	1	0.1512	0.2363	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAKI2_KIDNEY	0.82	1	0.3875	FALSE	43	37	8	105	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-CO2	17	13	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	37	9	0.45	0.77	0.1607	0.1229	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAKI2_KIDNEY	0.45	0.77	0.2836	FALSE	59	21	0	114	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ND5--MT-ATP8	12	30	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1134	0.2836	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAKI2_KIDNEY	1	1	0.397	FALSE	43	37	8	105	0	FALSE	ACH-000234
CAKI2_KIDNEY	DST--SDCBP	18	2	DST	4600	chr6:56716195:-	SDCBP	133242	chr8:59477578:+	ONLY_REF_SPLICE	YES	20	17	0.5	0.54	0.1701	0.0189	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein	CAKI2_KIDNEY	0.5	0.54	0.189	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	UBTD2--NSG2	9	37	UBTD2	1480	chr5:171710596:-	NSG2	21173	chr5:173669685:+	INCL_NON_REF_SPLICE	YES	45	0	0.51	1	0.0851	0.3498	UBTD2->chr5:171636644-171711075:-,ubiquitin_domain_containing_2,NSG2->chr5:173472607-173670504:+	CAKI2_KIDNEY	0.51	1	0.4349	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	PCMT1--PDSS2	6	43	PCMT1	1514	chr6:150071092:+	PDSS2	23401	chr6:107531774:-	ONLY_REF_SPLICE	YES	219	32	0.18	0.6	0.0567	0.4065	PCMT1->chr6:150070579-150132556:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase,PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2	CAKI2_KIDNEY	0.18	0.6	0.4632	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	RP11-96H19.1--RP11-446N19.1	13	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1229	0.0756	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAKI2_KIDNEY	0.95	1	0.1985	FALSE	515	4851	409	746	0	FALSE	ACH-000234
CAKI2_KIDNEY	NAA35--AC074212.3	14	1	NAA35	11495	chr9:88593296:+	AC074212.3	29439	chr19:46238635:+	ONLY_REF_SPLICE	YES	7	0	0.68	1	0.1323	0.0095	NAA35->N(alpha)-acetyltransferase_35,_NatC_auxiliary_subunit,chr9:88556061-88637213:+,AC074212.3->chr19:46236509-46267792:+	CAKI2_KIDNEY	0.68	1	0.1418	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	MT-ND5--MT-ATP8	12	7	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4709	68	0	0.22	0.1134	0.0662	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAKI2_KIDNEY	0	0.22	0.1796	FALSE	43	37	8	105	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ND5--MT-ATP8	6	30	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0567	0.2836	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAKI2_KIDNEY	0.95	1	0.3403	FALSE	43	37	8	105	0	FALSE	ACH-000234
CAKI2_KIDNEY	IGFBP7--MT-ND4L	13	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1229	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAKI2_KIDNEY	1	1	0.1229	FALSE	1	0	0	30	0	FALSE	ACH-000234
CAKI2_KIDNEY	RPL3--FN1	12	3	RPL3	5771	chr22:39711474:-	FN1	11463	chr2:216300791:-	INCL_NON_REF_SPLICE	YES	2221	1	0.01	0.94	0.1134	0.0284	GTEx&tcga_normals:1/3694=0.03%,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	CAKI2_KIDNEY	0.01	0.94	0.1418	TRUE	0	0	0	1	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ND6--MT-TE	9	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0851	0.1229	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAKI2_KIDNEY	0.88	1	0.208	FALSE	499	1288	110	792	0	FALSE	ACH-000234
CAKI2_KIDNEY	HIPK2--MT-RNR2	12	0	HIPK2	3392	chr7:139416616:-	MT-RNR2	33512	chrM:1683:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1134	0	HIPK2->Oncogene{Bushman},chr7:139246316-139477577:-,homeodomain_interacting_protein_kinase_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	1	1	0.1134	FALSE	0	0	0	2	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ND6--MT-TE	11	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.104	0.0378	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAKI2_KIDNEY	0.94	1	0.1418	FALSE	499	1288	110	792	0	FALSE	ACH-000234
CAKI2_KIDNEY	PCMT1--PDSS2	2	40	PCMT1	1514	chr6:150071092:+	PDSS2	24533	chr6:107519102:-	ONLY_REF_SPLICE	YES	219	37	0.16	0.53	0.0189	0.3781	PCMT1->chr6:150070579-150132556:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase,PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2	CAKI2_KIDNEY	0.16	0.53	0.397	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	MT-ND5--MT-ATP8	3	33	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0.3119	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAKI2_KIDNEY	1	1	0.3403	FALSE	43	37	8	105	0	FALSE	ACH-000234
CAKI2_KIDNEY	MTND4P12--MT-CO1	11	1	MTND4P12	1773	chr5:134262954:-	MT-CO1	5915	chrM:6441:+	INCL_NON_REF_SPLICE	YES	3	16276	0.8	0	0.104	0.0095	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAKI2_KIDNEY	0	0.8	0.1135	FALSE	10	0	0	6	0	FALSE	ACH-000234
CAKI2_KIDNEY	SAMD5--SASH1	11	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.104	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	CAKI2_KIDNEY	1	1	0.104	TRUE	53	396	64	110	0	FALSE	ACH-000234
CAKI2_KIDNEY	ACTN4--MT-CO1	7	15	ACTN4	20880	chr19:39220385:+	MT-CO1	26249	chrM:6434:+	INCL_NON_REF_SPLICE	NO	890	16181	0.02	0	0.0662	0.1418	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAKI2_KIDNEY	0	0.02	0.208	FALSE	0	0	0	3	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-CO2	8	10	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	75	21	0.19	0.46	0.0756	0.0945	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAKI2_KIDNEY	0.19	0.46	0.1701	FALSE	59	21	0	114	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ND5--MT-ATP8	3	30	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0.2836	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAKI2_KIDNEY	1	1	0.312	FALSE	43	37	8	105	0	FALSE	ACH-000234
CAKI2_KIDNEY	NRIP1--AF127936.7	10	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.5	1	0.0945	0.0189	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAKI2_KIDNEY	0.5	1	0.1134	FALSE	292	1546	117	613	0	FALSE	ACH-000234
CAKI2_KIDNEY	ACTN4--MT-CO1	9	5	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	1355	17145	0.01	0	0.0851	0.0473	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAKI2_KIDNEY	0	0.01	0.1324	FALSE	0	0	0	30	0	FALSE	ACH-000234
CAKI2_KIDNEY	FBXW11--CTC-537E7.2	10	1	FBXW11	1416	chr5:171433462:-	CTC-537E7.2	27841	chr5:67827744:-	ONLY_REF_SPLICE	YES	89	0	0.11	1	0.0945	0.0095	FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,CTC-537E7.2->chr5:67827517-67829357:-	CAKI2_KIDNEY	0.11	1	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-RNR2	9	4	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	8469	11762	0	0	0.0851	0.0378	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	0	0	0.1229	FALSE	63	17	1	58	0	FALSE	ACH-000234
CAKI2_KIDNEY	ZNF500--SEPT12	9	4	ZNF500	4546	chr16:4812272:-	SEPT12	21277	chr16:4829787:-	ONLY_REF_SPLICE	YES	18	0	0.42	1	0.0851	0.0378	{Klijn_CCL:Kidney=1},LOCAL_REARRANGEMENT:-:[10045],ZNF500->chr16:4798240-4817625:-,zinc_finger_protein_500,SEPT12->chr16:4827670-4838522:-,septin_12	CAKI2_KIDNEY	0.42	1	0.1229	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-RNR2	8	6	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	8469	0	0	1	0.0756	0.0567	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	0	1	0.1323	FALSE	63	17	1	58	0	FALSE	ACH-000234
CAKI2_KIDNEY	DST--SDCBP	5	17	DST	6509	chr6:56707853:-	SDCBP	133245	chr8:59477581:+	ONLY_REF_SPLICE	YES	25	16	0.47	0.58	0.0473	0.1607	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein	CAKI2_KIDNEY	0.47	0.58	0.208	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	MT-ND5--MT-ATP8	3	25	MT-ND5	2749	chrM:14085:+	MT-ATP8	5896	chrM:8449:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0284	0.2363	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAKI2_KIDNEY	0.97	1	0.2647	FALSE	43	37	8	105	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ND5--MT-ATP8	3	24	MT-ND5	2667	chrM:14003:+	MT-ATP8	5869	chrM:8422:+	INCL_NON_REF_SPLICE	NO	1281	0	0.02	1	0.0284	0.2269	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAKI2_KIDNEY	0.02	1	0.2553	FALSE	43	37	8	105	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ND5--MT-ATP8	3	24	MT-ND5	2644	chrM:13980:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	1539	0	0.02	1	0.0284	0.2269	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAKI2_KIDNEY	0.02	1	0.2553	FALSE	43	37	8	105	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ND6--MT-TE	4	20	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.0378	0.1891	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAKI2_KIDNEY	0.89	1	0.2269	FALSE	499	1288	110	792	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-RNR2	7	7	MT-ATP6	1516	chrM:9042:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	YES	4829	11600	0	0	0.0662	0.0662	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	0	0	0.1324	FALSE	63	17	1	58	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-RNR2	8	3	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	8111	11580	0	0	0.0756	0.0284	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	0	0	0.104	FALSE	63	17	1	58	0	FALSE	ACH-000234
CAKI2_KIDNEY	PFKL--MT-ND4L	7	6	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	607	0	0.02	1	0.0662	0.0567	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAKI2_KIDNEY	0.02	1	0.1229	FALSE	0	0	0	33	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-RNR2	7	3	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	8134	11529	0	0	0.0662	0.0284	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	0	0	0.0946	FALSE	63	17	1	58	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-TA--MT-TC	7	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0.0284	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAKI2_KIDNEY	1	1	0.0946	FALSE	462	80	0	856	0	FALSE	ACH-000234
CAKI2_KIDNEY	ACTN4--MT-CO1	6	6	ACTN4	15641	chr19:39214935:+	MT-CO1	26365	chrM:6550:+	INCL_NON_REF_SPLICE	YES	1281	17415	0.01	0	0.0567	0.0567	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAKI2_KIDNEY	0	0.01	0.1134	FALSE	0	0	0	30	0	FALSE	ACH-000234
CAKI2_KIDNEY	APP--MT-CO3	7	2	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	2365	9998	0	0	0.0662	0.0189	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAKI2_KIDNEY	0	0	0.0851	FALSE	0	0	0	26	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ND5--MT-ATP8	4	14	MT-ND5	2167	chrM:13503:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	3366	0	0.01	1	0.0378	0.1323	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAKI2_KIDNEY	0.01	1	0.1701	FALSE	43	37	8	105	0	FALSE	ACH-000234
CAKI2_KIDNEY	ACTN4--MT-CO1	6	5	ACTN4	15629	chr19:39214923:+	MT-CO1	26353	chrM:6538:+	INCL_NON_REF_SPLICE	YES	1358	16747	0.01	0	0.0567	0.0473	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAKI2_KIDNEY	0	0.01	0.104	FALSE	0	0	0	30	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-CO2	4	13	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	38	8	0.31	0.68	0.0378	0.1229	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAKI2_KIDNEY	0.31	0.68	0.1607	FALSE	59	21	0	114	0	FALSE	ACH-000234
CAKI2_KIDNEY	GSR--RBPMS-AS1	7	0	GSR	8552	chr8:30553868:-	RBPMS-AS1	19887	chr8:30242674:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0	GSR->chr8:30535583-30585443:-,glutathione_reductase,RBPMS-AS1->RBPMS_antisense_RNA_1,chr8:30239635-30242917:-	CAKI2_KIDNEY	1	1	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-RNR2	7	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	1	1	0.0662	FALSE	63	17	1	58	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-RNR2	7	0	MT-ATP6	1111	chrM:8637:+	MT-RNR2	5402	chrM:2391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	1	1	0.0662	FALSE	63	17	1	58	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAKI2_KIDNEY	1	1	0.0662	FALSE	462	80	0	856	0	FALSE	ACH-000234
CAKI2_KIDNEY	SLC1A5--MT-ND4L	7	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAKI2_KIDNEY	1	1	0.0662	FALSE	0	0	0	189	0	FALSE	ACH-000234
CAKI2_KIDNEY	NRIP1--AF127936.7	6	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	38	0	0.19	1	0.0567	0.0284	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAKI2_KIDNEY	0.19	1	0.0851	FALSE	125	705	46	456	0	FALSE	ACH-000234
CAKI2_KIDNEY	RP11-680G10.1--GSE1	6	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	18	1	0.33	0.0567	0.0284	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAKI2_KIDNEY	0.33	1	0.0851	TRUE	458	1351	185	561	0	FALSE	ACH-000234
CAKI2_KIDNEY	IFT140--RBFOX1	6	2	IFT140	19893	chr16:1611986:-	RBFOX1	52889	chr16:7629779:+	ONLY_REF_SPLICE	YES	14	0	0.36	1	0.0567	0.0189	IFT140->chr16:1560428-1662111:-,intraflagellar_transport_140,RBFOX1->RNA_binding_protein,_fox-1_homolog_1,chr16:6069095-7763340:+	CAKI2_KIDNEY	0.36	1	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	MT-ND5--MT-ATP8	3	14	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	NO	16	68	0.52	0.2	0.0284	0.1323	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAKI2_KIDNEY	0.2	0.52	0.1607	FALSE	43	37	8	105	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-CO2	4	9	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	24	7	0.35	0.65	0.0378	0.0851	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAKI2_KIDNEY	0.35	0.65	0.1229	FALSE	59	21	0	114	0	FALSE	ACH-000234
CAKI2_KIDNEY	TLN2--RP11-1069G10.2	6	1	TLN2	5593	chr15:62881961:+	RP11-1069G10.2	79922	chr15:63190850:+	ONLY_REF_SPLICE	YES	13	0	0.35	1	0.0567	0.0095	NEIGHBORS[51181],TLN2->chr15:62682725-63136830:+,talin_2,RP11-1069G10.2->chr15:63188011-63191742:+	CAKI2_KIDNEY	0.35	1	0.0662	FALSE	0	0	0	1	0	FALSE	ACH-000234
CAKI2_KIDNEY	ARHGAP26--RNF130	3	12	ARHGAP26	18023	chr5:142311690:+	RNF130	58821	chr5:179390564:-	ONLY_REF_SPLICE	YES	20	68	0.43	0.18	0.0284	0.1134	{Klijn_CCL:Kidney=1},ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+,RNF130->chr5:179338651-179499118:-,ring_finger_protein_130	CAKI2_KIDNEY	0.18	0.43	0.1418	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	DST--SDCBP	1	20	DST	6509	chr6:56707853:-	SDCBP	130727	chr8:59472843:+	ONLY_REF_SPLICE	YES	25	7	0.46	0.75	0.0095	0.1891	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein	CAKI2_KIDNEY	0.46	0.75	0.1986	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-CO2	6	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAKI2_KIDNEY	1	1	0.0567	FALSE	59	21	0	114	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-RNR2	6	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	1	1	0.0567	FALSE	63	17	1	58	0	FALSE	ACH-000234
CAKI2_KIDNEY	ACTN4--MT-CO1	3	11	ACTN4	15652	chr19:39214946:+	MT-CO1	26380	chrM:6565:+	INCL_NON_REF_SPLICE	YES	1203	17414	0.01	0	0.0284	0.104	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAKI2_KIDNEY	0	0.01	0.1324	FALSE	0	0	0	30	0	FALSE	ACH-000234
CAKI2_KIDNEY	MIOS--RPA3-AS1	1	19	MIOS	1817	chr7:7607319:+	RPA3-AS1	30878	chr7:7916912:+	ONLY_REF_SPLICE	YES	28	25	0.42	0.44	0.0095	0.1796	NEIGHBORS[31782],MIOS->chr7:7606503-7648560:+,missing_oocyte,_meiosis_regulator,_homolog_(Drosophila),RPA3-AS1->chr7:7680342-8043689:+	CAKI2_KIDNEY	0.42	0.44	0.1891	FALSE	0	0	0	1	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ND5--MT-ATP8	3	11	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	9	435	0.61	0.03	0.0284	0.104	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAKI2_KIDNEY	0.03	0.61	0.1324	FALSE	43	37	8	105	0	FALSE	ACH-000234
CAKI2_KIDNEY	APP--MT-CO3	5	2	APP	11652	chr21:27394197:-	MT-CO3	32390	chrM:9421:+	INCL_NON_REF_SPLICE	YES	2595	10037	0	0	0.0473	0.0189	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAKI2_KIDNEY	0	0	0.0662	FALSE	0	0	0	26	0	FALSE	ACH-000234
CAKI2_KIDNEY	ALDOA--FTH1	5	0	ALDOA	7435	chr16:30077207:+	FTH1	15146	chr11:61734993:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	CAKI2_KIDNEY	1	1	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1123	chrM:8649:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	1	1	0.0473	FALSE	63	17	1	58	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1100	chrM:8626:+	MT-RNR2	5390	chrM:2379:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	1	1	0.0473	FALSE	63	17	1	58	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-RNR2	4	4	MT-ATP6	1172	chrM:8698:+	MT-RNR2	5313	chrM:2302:+	INCL_NON_REF_SPLICE	YES	9301	13076	0	0	0.0378	0.0378	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	0	0	0.0756	FALSE	63	17	1	58	0	FALSE	ACH-000234
CAKI2_KIDNEY	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CAKI2_KIDNEY	1	1	0.0473	TRUE	22	156	2	142	0	FALSE	ACH-000234
CAKI2_KIDNEY	RP11-96H19.1--RP11-446N19.1	3	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0284	0.0756	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAKI2_KIDNEY	0.92	1	0.104	FALSE	467	2173	244	435	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-CO2	3	7	MT-ATP6	1144	chrM:8670:+	MT-CO2	4926	chrM:7830:+	INCL_NON_REF_SPLICE	YES	32	22	0.24	0.31	0.0284	0.0662	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAKI2_KIDNEY	0.24	0.31	0.0946	FALSE	59	21	0	114	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ND5--MT-ATP8	3	7	MT-ND5	2150	chrM:13486:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3879	68	0	0.13	0.0284	0.0662	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAKI2_KIDNEY	0	0.13	0.0946	FALSE	43	37	8	105	0	FALSE	ACH-000234
CAKI2_KIDNEY	CAPZA2--MET	2	10	CAPZA2	3371	chr7:116502704:+	MET	47818	chr7:116423358:+	ONLY_REF_SPLICE	YES	71	447	0.14	0.03	0.0189	0.0945	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	CAKI2_KIDNEY	0.03	0.14	0.1134	TRUE	0	0	0	1	0	FALSE	ACH-000234
CAKI2_KIDNEY	MIOS--RPA3-AS1	4	2	MIOS	2252	chr7:7607754:+	RPA3-AS1	35143	chr7:8043538:+	ONLY_REF_SPLICE	YES	17	0	0.26	1	0.0378	0.0189	NEIGHBORS[31782],MIOS->chr7:7606503-7648560:+,missing_oocyte,_meiosis_regulator,_homolog_(Drosophila),RPA3-AS1->chr7:7680342-8043689:+	CAKI2_KIDNEY	0.26	1	0.0567	FALSE	0	0	0	1	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-RNR2	3	6	MT-ATP6	1158	chrM:8684:+	MT-RNR2	4726	chrM:1715:+	INCL_NON_REF_SPLICE	NO	8856	0	0	1	0.0284	0.0567	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	0	1	0.0851	FALSE	63	17	1	58	0	FALSE	ACH-000234
CAKI2_KIDNEY	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	51	1	0.11	0.0378	0.0189	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAKI2_KIDNEY	0.11	1	0.0567	TRUE	465	1949	224	605	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	7293	11781	0	0	0.0378	0.0095	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	0	0	0.0473	FALSE	63	17	1	58	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-RNR2	3	5	MT-ATP6	1139	chrM:8665:+	MT-RNR2	4749	chrM:1738:+	INCL_NON_REF_SPLICE	YES	7953	0	0	1	0.0284	0.0473	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	0	1	0.0757	FALSE	63	17	1	58	0	FALSE	ACH-000234
CAKI2_KIDNEY	RP11-96H19.1--RP11-446N19.1	2	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0189	0.0851	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAKI2_KIDNEY	0.92	1	0.104	FALSE	407	2205	196	549	0	FALSE	ACH-000234
CAKI2_KIDNEY	HIPK2--MT-RNR2	4	0	HIPK2	3409	chr7:139416599:-	MT-RNR2	33528	chrM:1699:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	HIPK2->Oncogene{Bushman},chr7:139246316-139477577:-,homeodomain_interacting_protein_kinase_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	1	1	0.0378	FALSE	0	0	0	2	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ND5--MT-ATP8	4	0	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAKI2_KIDNEY	1	1	0.0378	FALSE	41	30	6	102	0	FALSE	ACH-000234
CAKI2_KIDNEY	APP--MT-CO3	3	3	APP	11655	chr21:27394194:-	MT-CO3	32390	chrM:9421:+	INCL_NON_REF_SPLICE	YES	2810	10037	0	0	0.0284	0.0284	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAKI2_KIDNEY	0	0	0.0568	FALSE	0	0	0	26	0	FALSE	ACH-000234
CAKI2_KIDNEY	RACGAP1--AKAP6	3	3	RACGAP1	18352	chr12:50387914:-	AKAP6	54976	chr14:33290608:+	ONLY_REF_SPLICE	YES	244	1	0.02	0.86	0.0284	0.0284	{Klijn_CCL:Kidney=1},RACGAP1->Rac_GTPase_activating_protein_1,chr12:50370706-50426919:-,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	CAKI2_KIDNEY	0.02	0.86	0.0568	TRUE	0	0	0	1	0	FALSE	ACH-000234
CAKI2_KIDNEY	RP11-933H2.4--NGEF	3	3	RP11-933H2.4	2239	chr3:131095456:-	NGEF	19007	chr2:233785295:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0.0284	RP11-933H2.4->chr3:131043936-131100319:-,NGEF->chr2:233743396-233877982:-,neuronal_guanine_nucleotide_exchange_factor	CAKI2_KIDNEY	1	1	0.0568	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1555	chrM:9081:+	MT-RNR2	5408	chrM:2397:+	INCL_NON_REF_SPLICE	YES	2933	12724	0	0	0.0284	0.0189	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	0	0	0.0473	FALSE	63	17	1	58	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ATP8--MT-CO1	3	2	MT-ATP8	1284	chrM:8649:+	MT-CO1	4850	chrM:6546:+	INCL_NON_REF_SPLICE	NO	0	17445	1	0	0.0284	0.0189	LOCAL_REARRANGEMENT:+:[921],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAKI2_KIDNEY	0	1	0.0473	FALSE	3	1	0	9	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ND5--MT-ATP8	3	2	MT-ND5	1648	chrM:12984:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	NO	2552	68	0	0.07	0.0284	0.0189	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAKI2_KIDNEY	0	0.07	0.0473	FALSE	42	36	7	104	0	FALSE	ACH-000234
CAKI2_KIDNEY	RP11-222A11.1--ADPGK	3	2	RP11-222A11.1	6870	chr10:67375519:+	ADPGK	28388	chr15:73078187:-	ONLY_REF_SPLICE	YES	12	0	0.29	1	0.0284	0.0189	RP11-222A11.1->chr10:67330096-67526299:+,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	CAKI2_KIDNEY	0.29	1	0.0473	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	7417	11912	0	0	0.0284	0.0095	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	0	0	0.0379	FALSE	63	17	1	58	0	FALSE	ACH-000234
CAKI2_KIDNEY	RP11-275N1.1--NEBL	3	1	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	5	21	0.44	0.16	0.0284	0.0095	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	CAKI2_KIDNEY	0.16	0.44	0.0379	TRUE	0	2	0	25	2	FALSE	ACH-000234
CAKI2_KIDNEY	ALDOA--CA12	3	0	ALDOA	9174	chr16:30078946:+	CA12	24218	chr15:63631088:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,CA12->carbonic_anhydrase_12,chr15:63613577-63674360:-	CAKI2_KIDNEY	1	1	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	CRB1--ATP6V1G3	3	0	CRB1	4445	chr1:197273543:+	ATP6V1G3	36656	chr1:198498311:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	CRB1->chr1:197170592-197447585:+,crumbs_1,_cell_polarity_complex_component,ATP6V1G3->ATPase_H+_transporting_V1_subunit_G3,chr1:198492352-198510075:-	CAKI2_KIDNEY	1	1	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	CRB1--ATP6V1G3	3	0	CRB1	1127	chr1:197170718:+	ATP6V1G3	36656	chr1:198498311:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	CRB1->chr1:197170592-197447585:+,crumbs_1,_cell_polarity_complex_component,ATP6V1G3->ATPase_H+_transporting_V1_subunit_G3,chr1:198492352-198510075:-	CAKI2_KIDNEY	1	1	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	FTH1--ACTB	3	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	CAKI2_KIDNEY	1	1	0.0284	TRUE	1	0	0	97	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1103	chrM:8629:+	MT-RNR2	5392	chrM:2381:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAKI2_KIDNEY	1	1	0.0284	FALSE	63	17	1	58	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ND5--MT-ATP8	3	0	MT-ND5	1076	chrM:12412:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAKI2_KIDNEY	1	1	0.0284	FALSE	34	25	3	77	0	FALSE	ACH-000234
CAKI2_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAKI2_KIDNEY	1	1	0.0284	FALSE	499	1288	110	792	0	FALSE	ACH-000234
CAKI2_KIDNEY	MTND4P12--MT-CO1	3	0	MTND4P12	1245	chr5:134263482:-	MT-CO1	6027	chrM:6553:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAKI2_KIDNEY	1	1	0.0284	FALSE	10	0	0	6	0	FALSE	ACH-000234
CAKI2_KIDNEY	RP11-120D5.1--MID1	2	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	55	0.86	0.1	0.0189	0.0378	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CAKI2_KIDNEY	0.1	0.86	0.0567	FALSE	16	356	14	466	0	FALSE	ACH-000234
CAKI2_KIDNEY	RPSAP52--HMGA2	3	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	CAKI2_KIDNEY	1	1	0.0284	FALSE	0	59	0	125	0	FALSE	ACH-000234
CAKI2_KIDNEY	NRIP1--AF127936.7	2	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	61	0	0.08	1	0.0189	0.0284	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAKI2_KIDNEY	0.08	1	0.0473	FALSE	164	806	69	479	0	FALSE	ACH-000234
CAKI2_KIDNEY	RP11-123O10.4--GRIP1	2	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0.0284	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAKI2_KIDNEY	1	1	0.0473	FALSE	93	270	15	244	0	FALSE	ACH-000234
CAKI2_KIDNEY	AC024084.1--AC009784.3	2	2	AC024084.1	3174	chr7:135743253:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0.0189	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	CAKI2_KIDNEY	1	1	0.0378	FALSE	2	5	0	14	0	FALSE	ACH-000234
CAKI2_KIDNEY	PSME4--ASB3	2	2	PSME4	15950	chr2:54150186:-	ASB3	62050	chr2:53927665:-	ONLY_REF_SPLICE	YES	23	20	0.15	0.17	0.0189	0.0189	NEIGHBORS[3907],PSME4->chr2:54091204-54197977:-,proteasome_activator_subunit_4,ASB3->ankyrin_repeat_and_SOCS_box_containing_3,chr2:53897430-54087297:-	CAKI2_KIDNEY	0.15	0.17	0.0378	FALSE	0	0	0	1	0	FALSE	ACH-000234
CAKI2_KIDNEY	RP11-222A11.1--ADPGK	2	2	RP11-222A11.1	6870	chr10:67375519:+	ADPGK	31143	chr15:73067438:-	ONLY_REF_SPLICE	YES	12	119	0.25	0.03	0.0189	0.0189	RP11-222A11.1->chr10:67330096-67526299:+,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	CAKI2_KIDNEY	0.03	0.25	0.0378	TRUE	0	0	0	1	0	FALSE	ACH-000234
CAKI2_KIDNEY	TGIF1--MYL12B	2	1	TGIF1	8043	chr18:3450503:+	MYL12B	20407	chr18:3272882:+	ONLY_REF_SPLICE	YES	261	210	0.01	0.01	0.0189	0.0095	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Lung=1},TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	CAKI2_KIDNEY	0.01	0.01	0.0284	FALSE	0	2	0	6	0	FALSE	ACH-000234
CAKI2_KIDNEY	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0.0095	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAKI2_KIDNEY	1	1	0.0284	TRUE	62	24	1	171	0	FALSE	ACH-000234
CAKI2_KIDNEY	AC024084.1--AC009784.3	2	0	AC024084.1	3174	chr7:135743253:+	AC009784.3	12070	chr7:136013730:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	CAKI2_KIDNEY	1	1	0.0189	FALSE	0	1	0	1	0	FALSE	ACH-000234
CAKI2_KIDNEY	AC024084.1--AC009784.3	2	0	AC024084.1	2134	chr7:135715781:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	CAKI2_KIDNEY	1	1	0.0189	FALSE	0	3	0	12	0	FALSE	ACH-000234
CAKI2_KIDNEY	AC024084.1--AC009784.3	2	0	AC024084.1	1028	chr7:135710536:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	CAKI2_KIDNEY	1	1	0.0189	FALSE	1	1	0	2	0	FALSE	ACH-000234
CAKI2_KIDNEY	AKR1C2--AKR1E2	2	0	AKR1C2	9530	chr10:5045944:-	AKR1E2	25878	chr10:4872867:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	DGD_PARALOGS,HGNC_GENEFAM,PROTCLUST,AKR1C2->aldo-keto_reductase_family_1,_member_C2,chr10:5029967-5060223:-,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	CAKI2_KIDNEY	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	DDHD1--COL4A1	2	0	DDHD1	4498	chr14:53570401:-	COL4A1	48486	chr13:110835623:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	DDHD1->DDHD_domain_containing_1,chr14:53510686-53620000:-,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	CAKI2_KIDNEY	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	NCOR2--UBC	2	0	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	CAKI2_KIDNEY	1	1	0.0189	TRUE	52	148	13	33	0	FALSE	ACH-000234
CAKI2_KIDNEY	PELI2--PTPN4	2	0	PELI2	3527	chr14:56645182:+	PTPN4	19960	chr2:120567413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PELI2->chr14:56584532-56768244:+,pellino_E3_ubiquitin_protein_ligase_family_member_2,PTPN4->chr2:120517207-120741394:+,protein_tyrosine_phosphatase,_non-receptor_type_4	CAKI2_KIDNEY	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	PRRC1--NDUFAF2	2	0	PRRC1	1168	chr5:126853468:+	NDUFAF2	25339	chr5:60448531:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PRRC1->chr5:126853301-126890781:+,proline_rich_coiled-coil_1,NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+	CAKI2_KIDNEY	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	RP11-275N1.1--NEBL	2	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	CAKI2_KIDNEY	1	1	0.0189	TRUE	0	0	0	21	0	FALSE	ACH-000234
CAKI2_KIDNEY	RP4-565E6.1--HYDIN	1	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.0095	0.0378	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	CAKI2_KIDNEY	0.71	1	0.0473	TRUE	456	1387	91	133	0	FALSE	ACH-000234
CAKI2_KIDNEY	STOM--PHF19	2	0	STOM	7826	chr9:124110293:-	PHF19	28925	chr9:123620564:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	STOM->chr9:124101355-124132531:-,stomatin,PHF19->PHD_finger_protein_19,chr9:123617977-123639606:-	CAKI2_KIDNEY	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	MIOS--RPA3-AS1	1	3	MIOS	2252	chr7:7607754:+	RPA3-AS1	33821	chr7:8007330:+	ONLY_REF_SPLICE	NO	17	5	0.19	0.44	0.0095	0.0284	NEIGHBORS[31782],MIOS->chr7:7606503-7648560:+,missing_oocyte,_meiosis_regulator,_homolog_(Drosophila),RPA3-AS1->chr7:7680342-8043689:+	CAKI2_KIDNEY	0.19	0.44	0.0379	FALSE	0	0	0	1	0	FALSE	ACH-000234
CAKI2_KIDNEY	DST--SDCBP	1	2	DST	4600	chr6:56716195:-	SDCBP	133245	chr8:59477581:+	ONLY_REF_SPLICE	YES	20	16	0.13	0.16	0.0095	0.0189	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein	CAKI2_KIDNEY	0.13	0.16	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	RP11-933H2.4--NGEF	1	2	RP11-933H2.4	1143	chr3:131100177:-	NGEF	19007	chr2:233785295:-	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0095	0.0189	RP11-933H2.4->chr3:131043936-131100319:-,NGEF->chr2:233743396-233877982:-,neuronal_guanine_nucleotide_exchange_factor	CAKI2_KIDNEY	0.6	1	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000234
CAKI2_KIDNEY	ETNK1--CMAS	1	1	ETNK1	3386	chr12:22796956:+	CMAS	21352	chr12:22208083:+	ONLY_REF_SPLICE	YES	36	127	0.05	0.02	0.0095	0.0095	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ETNK1->chr12:22778009-22843599:+,ethanolamine_kinase_1,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	CAKI2_KIDNEY	0.02	0.05	0.019	TRUE	0	0	0	1	0	FALSE	ACH-000234
CAKI2_KIDNEY	GSR--PPP2CB	1	1	GSR	1397	chr8:30585047:-	PPP2CB	23918	chr8:30657271:-	ONLY_REF_SPLICE	YES	347	497	0.01	0	0.0095	0.0095	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Hippocampus=1,Esophagus_-_Muscularis=1},LOCAL_REARRANGEMENT:-:[46530],GSR->chr8:30535583-30585443:-,glutathione_reductase,PPP2CB->chr8:30631973-30671830:-,protein_phosphatase_2_catalytic_subunit_beta	CAKI2_KIDNEY	0	0.01	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000234
CAKI2_KIDNEY	PSME4--ASB3	1	1	PSME4	15678	chr2:54150458:-	ASB3	62050	chr2:53927665:-	ONLY_REF_SPLICE	NO	19	20	0.1	0.09	0.0095	0.0095	NEIGHBORS[3907],PSME4->chr2:54091204-54197977:-,proteasome_activator_subunit_4,ASB3->ankyrin_repeat_and_SOCS_box_containing_3,chr2:53897430-54087297:-	CAKI2_KIDNEY	0.09	0.1	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000234
JHH6_LIVER	TIMM23B--LINC00843	150	68	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.4918	0.6763	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHH6_LIVER	0.99	1	2.1681	TRUE	508	994	45	981	0	FALSE	ACH-000217
JHH6_LIVER	DNM2--QTRT1	88	80	DNM2	4114	chr19:10870487:+	QTRT1	41366	chr19:10812626:+	ONLY_REF_SPLICE	YES	269	178	0.38	0.49	0.8752	0.7956	LOCAL_REARRANGEMENT:+:[4642],DNM2->chr19:10828755-10944164:+,dynamin_2,QTRT1->chr19:10812106-10824113:+,queuine_tRNA-ribosyltransferase_catalytic_subunit_1	JHH6_LIVER	0.38	0.49	1.6708	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	IGSF3--GGT1	89	59	IGSF3	13001	chr1:117131316:-	GGT1	26899	chr22:25003921:+	ONLY_REF_SPLICE	YES	34	121	0.81	0.55	0.8851	0.5868	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	JHH6_LIVER	0.55	0.81	1.4719	TRUE	1	1	0	8	1	TRUE	ACH-000217
JHH6_LIVER	MT-TA--MT-TN	101	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0045	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH6_LIVER	1	1	1.0045	FALSE	369	2501	205	193	0	FALSE	ACH-000217
JHH6_LIVER	TIMM23--RP11-464F9.1	85	11	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	516	18	0.16	0.84	0.8454	0.1094	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JHH6_LIVER	0.16	0.84	0.9548	TRUE	519	3926	326	965	0	FALSE	ACH-000217
JHH6_LIVER	MT-TA--MT-TC	69	11	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6862	0.1094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHH6_LIVER	1	1	0.7956	FALSE	462	80	0	856	0	FALSE	ACH-000217
JHH6_LIVER	PHYH--LINC00709	31	16	PHYH	10131	chr10:13325690:-	LINC00709	16854	chr10:9328555:+	ONLY_REF_SPLICE	YES	100	0	0.32	1	0.3083	0.1591	PHYH->chr10:13319796-13344412:-,phytanoyl-CoA_2-hydroxylase,LINC00709->chr10:9317796-9329020:+,long_intergenic_non-protein_coding_RNA_709	JHH6_LIVER	0.32	1	0.4674	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	HSP90AB1--MT-RNR2	27	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3579	0	0.01	1	0.2685	0.0199	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0.01	1	0.2884	FALSE	13	9	0	364	0	FALSE	ACH-000217
JHH6_LIVER	AP000525.9--LA16c-60G3.6	25	4	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	27	0	0.52	1	0.2486	0.0398	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	JHH6_LIVER	0.52	1	0.2884	TRUE	0	42	0	133	42	FALSE	ACH-000217
JHH6_LIVER	MT-ND4--MT-ND4L	3	78	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	NO	9	0	0.9	1	0.0298	0.7757	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH6_LIVER	0.9	1	0.8055	FALSE	344	826	44	306	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND4--MT-ND4L	5	68	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	230	0	0.24	1	0.0497	0.6763	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH6_LIVER	0.24	1	0.726	FALSE	344	827	44	306	0	FALSE	ACH-000217
JHH6_LIVER	IGSF3--GGT1	7	58	IGSF3	13000	chr1:117131317:-	GGT1	26901	chr22:25003923:+	INCL_NON_REF_SPLICE	YES	34	120	0.66	0.35	0.0696	0.5768	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	JHH6_LIVER	0.35	0.66	0.6464	TRUE	1	1	0	8	1	TRUE	ACH-000217
JHH6_LIVER	DNM2--QTRT1	1	80	DNM2	5632	chr19:10874292:+	QTRT1	41366	chr19:10812626:+	ONLY_REF_SPLICE	NO	297	178	0.21	0.31	0.0099	0.7956	LOCAL_REARRANGEMENT:+:[4642],DNM2->chr19:10828755-10944164:+,dynamin_2,QTRT1->chr19:10812106-10824113:+,queuine_tRNA-ribosyltransferase_catalytic_subunit_1	JHH6_LIVER	0.21	0.31	0.8055	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	MT-TA--MT-TN	12	35	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1193	0.3481	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH6_LIVER	1	1	0.4674	FALSE	369	2501	205	193	0	FALSE	ACH-000217
JHH6_LIVER	MT-CO3--MT-ATP6	13	30	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	2	0.9	0.96	0.1293	0.2984	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHH6_LIVER	0.9	0.96	0.4277	FALSE	189	492	56	216	0	FALSE	ACH-000217
JHH6_LIVER	NPM1P24--SET	20	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	35	2021	0.38	0.01	0.1989	0.0099	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JHH6_LIVER	0.01	0.38	0.2088	TRUE	0	0	0	434	0	FALSE	ACH-000217
JHH6_LIVER	MT-TA--MT-TN	8	43	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0796	0.4277	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH6_LIVER	1	1	0.5073	FALSE	369	2501	205	193	0	FALSE	ACH-000217
JHH6_LIVER	FTH1--ACTB	17	6	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	16602	0	0	1	0.1691	0.0597	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	JHH6_LIVER	0	1	0.2288	TRUE	1	0	0	97	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND4--MT-ND4L	3	60	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	0	0.91	1	0.0298	0.5967	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH6_LIVER	0.91	1	0.6265	FALSE	344	821	44	306	0	FALSE	ACH-000217
JHH6_LIVER	FTL--RPL39	17	0	FTL	1095	chr19:49468652:+	RPL39	5592	chrX:118925593:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1691	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	JHH6_LIVER	1	1	0.1691	TRUE	0	0	0	3	0	TRUE	ACH-000217
JHH6_LIVER	MT-CO3--MT-ATP6	7	37	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	2	35	0.96	0.56	0.0696	0.368	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHH6_LIVER	0.56	0.96	0.4376	FALSE	189	492	56	216	0	FALSE	ACH-000217
JHH6_LIVER	DNM2--QTRT1	2	56	DNM2	4114	chr19:10870487:+	QTRT1	41532	chr19:10812792:+	ONLY_REF_SPLICE	YES	269	189	0.18	0.23	0.0199	0.5569	LOCAL_REARRANGEMENT:+:[4642],DNM2->chr19:10828755-10944164:+,dynamin_2,QTRT1->chr19:10812106-10824113:+,queuine_tRNA-ribosyltransferase_catalytic_subunit_1	JHH6_LIVER	0.18	0.23	0.5768	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	MT-ND1--MT-RNR2	7	36	MT-ND1	1861	chrM:4167:+	MT-RNR2	4985	chrM:1699:+	INCL_NON_REF_SPLICE	YES	14	0	0.75	1	0.0696	0.358	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0.75	1	0.4276	FALSE	114	26	4	85	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND1--MT-RNR2	13	10	MT-ND1	1264	chrM:3570:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	107	0	0.18	1	0.1293	0.0995	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0.18	1	0.2288	FALSE	114	26	4	85	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND4--MT-RNR2	12	3	MT-ND4	1209	chrM:10968:+	MT-RNR2	5415	chrM:1707:+	INCL_NON_REF_SPLICE	YES	14433	0	0	1	0.1193	0.0298	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0	1	0.1491	FALSE	13	19	3	21	0	FALSE	ACH-000217
JHH6_LIVER	HSP90AB1--MT-RNR2	12	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3576	0	0	1	0.1193	0.0199	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0	1	0.1392	FALSE	13	9	0	364	0	FALSE	ACH-000217
JHH6_LIVER	MAP4K4--ANKRD36	11	5	MAP4K4	2689	chr2:102315000:+	ANKRD36	74441	chr2:97864200:+	ONLY_REF_SPLICE	YES	142	24	0.1	0.4	0.1094	0.0497	MAP4K4->chr2:102313312-102511149:+,mitogen-activated_protein_kinase_kinase_kinase_kinase_4,ANKRD36->ankyrin_repeat_domain_36,chr2:97779233-97930258:+	JHH6_LIVER	0.1	0.4	0.1591	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	MT-CO3--MT-ATP6	3	36	MT-CO3	1205	chrM:9411:+	MT-ATP6	5179	chrM:8921:+	INCL_NON_REF_SPLICE	YES	8	45	0.83	0.46	0.0298	0.358	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHH6_LIVER	0.46	0.83	0.3878	FALSE	189	492	56	216	0	FALSE	ACH-000217
JHH6_LIVER	DNM2--QTRT1	2	39	DNM2	1325	chr19:10829079:+	QTRT1	41366	chr19:10812626:+	ONLY_REF_SPLICE	YES	176	178	0.19	0.19	0.0199	0.3879	LOCAL_REARRANGEMENT:+:[4642],DNM2->chr19:10828755-10944164:+,dynamin_2,QTRT1->chr19:10812106-10824113:+,queuine_tRNA-ribosyltransferase_catalytic_subunit_1	JHH6_LIVER	0.19	0.19	0.4078	TRUE	0	2	0	2	1	TRUE	ACH-000217
JHH6_LIVER	FTH1--ACTB	10	7	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	17999	0	0	1	0.0995	0.0696	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	JHH6_LIVER	0	1	0.1691	TRUE	1	0	0	97	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND4--MT-RNR2	5	27	MT-ND4	1923	chrM:11682:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	19962	0	0	1	0.0497	0.2685	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0	1	0.3182	FALSE	13	19	3	21	0	FALSE	ACH-000217
JHH6_LIVER	MT-TA--MT-TN	9	11	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0895	0.1094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH6_LIVER	1	1	0.1989	FALSE	369	2501	205	193	0	FALSE	ACH-000217
JHH6_LIVER	RP11-96H19.1--RP11-446N19.1	8	14	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.92	0.96	0.0796	0.1392	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHH6_LIVER	0.92	0.96	0.2188	FALSE	515	4851	409	746	0	FALSE	ACH-000217
JHH6_LIVER	NPM1P24--SET	11	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	35	2203	0.26	0.01	0.1094	0.0099	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JHH6_LIVER	0.01	0.26	0.1193	TRUE	0	0	0	434	0	FALSE	ACH-000217
JHH6_LIVER	FAM110B--RP11-648L3.2	7	16	FAM110B	1298	chr8:58907365:+	RP11-648L3.2	19033	chr8:59013566:-	ONLY_REF_SPLICE	YES	7	0	0.77	1	0.0696	0.1591	NEIGHBORS_OVERLAP:+:-:[14852],FAM110B->chr8:58907068-59116838:+,family_with_sequence_similarity_110_member_B,RP11-648L3.2->chr8:59004001-59018853:-	JHH6_LIVER	0.77	1	0.2287	FALSE	0	0	0	1	0	FALSE	ACH-000217
JHH6_LIVER	MT-CO3--MT-ATP6	3	32	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	8	2	0.81	0.95	0.0298	0.3183	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHH6_LIVER	0.81	0.95	0.3481	FALSE	189	492	56	216	0	FALSE	ACH-000217
JHH6_LIVER	MT-CO3--MT-ATP6	3	32	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	5	41	0.88	0.46	0.0298	0.3183	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHH6_LIVER	0.46	0.88	0.3481	FALSE	189	492	56	216	0	FALSE	ACH-000217
JHH6_LIVER	MT-CO3--MT-ATP6	5	24	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	2	0.97	0.94	0.0497	0.2387	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHH6_LIVER	0.94	0.97	0.2884	FALSE	189	492	56	216	0	FALSE	ACH-000217
JHH6_LIVER	MT-CO3--MT-ATP6	5	24	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	1	3	0.97	0.91	0.0497	0.2387	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHH6_LIVER	0.91	0.97	0.2884	FALSE	189	492	56	216	0	FALSE	ACH-000217
JHH6_LIVER	MT-CO3--MT-ATP6	5	24	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	2	0.97	0.94	0.0497	0.2387	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHH6_LIVER	0.94	0.97	0.2884	FALSE	189	492	56	216	0	FALSE	ACH-000217
JHH6_LIVER	MT-TA--MT-TN	4	28	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0.2785	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH6_LIVER	1	1	0.3183	FALSE	369	2501	205	193	0	FALSE	ACH-000217
JHH6_LIVER	MT-TA--MT-TN	11	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1094	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH6_LIVER	1	1	0.1094	FALSE	369	2501	205	193	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND4--MT-ND4L	4	27	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1970	0	0.02	1	0.0398	0.2685	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH6_LIVER	0.02	1	0.3083	FALSE	344	827	44	306	0	FALSE	ACH-000217
JHH6_LIVER	MT-CO3--MT-ATP6	5	22	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	2	0.96	0.93	0.0497	0.2188	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHH6_LIVER	0.93	0.96	0.2685	FALSE	189	492	56	216	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND1--MT-RNR2	8	10	MT-ND1	1264	chrM:3570:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	107	0	0.14	1	0.0796	0.0995	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0.14	1	0.1791	FALSE	114	26	4	85	0	FALSE	ACH-000217
JHH6_LIVER	MT-TA--MT-TC	8	10	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0796	0.0995	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHH6_LIVER	1	1	0.1791	FALSE	462	80	0	856	0	FALSE	ACH-000217
JHH6_LIVER	MT-TA--MT-TN	4	26	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0.2586	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH6_LIVER	1	1	0.2984	FALSE	369	2501	205	193	0	FALSE	ACH-000217
JHH6_LIVER	MT-CO3--MT-ATP6	3	29	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	18	0.97	0.64	0.0298	0.2884	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHH6_LIVER	0.64	0.97	0.3182	FALSE	189	492	56	216	0	FALSE	ACH-000217
JHH6_LIVER	RP11-444D3.1--SOX5	10	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0995	0.0099	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	JHH6_LIVER	1	1	0.1094	TRUE	477	1352	189	275	0	FALSE	ACH-000217
JHH6_LIVER	SLC1A5--MT-ND4L	10	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0995	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH6_LIVER	1	1	0.0995	FALSE	0	0	0	189	0	FALSE	ACH-000217
JHH6_LIVER	MT-CO3--MT-ATP6	9	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.71	1	0.0895	0.0298	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHH6_LIVER	0.71	1	0.1193	FALSE	189	492	56	216	0	FALSE	ACH-000217
JHH6_LIVER	SRPK1--STK38	8	7	SRPK1	7482	chr6:35855801:-	STK38	29149	chr6:36489594:-	ONLY_REF_SPLICE	YES	231	166	0.06	0.08	0.0796	0.0696	SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-,STK38->chr6:36461669-36515247:-,serine/threonine_kinase_38	JHH6_LIVER	0.06	0.08	0.1492	TRUE	0	0	0	1	0	FALSE	ACH-000217
JHH6_LIVER	NRIP1--AF127936.7	9	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0895	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHH6_LIVER	1	1	0.0895	FALSE	292	1546	117	613	0	FALSE	ACH-000217
JHH6_LIVER	C11orf68--DRAP1	8	2	C11orf68	1087	chr11:65686502:-	DRAP1	6880	chr11:65687297:+	INCL_NON_REF_SPLICE	YES	0	1340	1	0.01	0.0796	0.0199	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	JHH6_LIVER	0.01	1	0.0995	FALSE	0	1	0	6	1	FALSE	ACH-000217
JHH6_LIVER	LINC00299--AC007464.1	8	1	LINC00299	17125	chr2:8200478:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0796	0.0099	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	JHH6_LIVER	0.9	1	0.0895	TRUE	20	19	0	15	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND1--MT-RNR2	6	9	MT-ND1	1246	chrM:3552:+	MT-RNR2	5019	chrM:1733:+	INCL_NON_REF_SPLICE	YES	84	0	0.15	1	0.0597	0.0895	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0.15	1	0.1492	FALSE	114	26	4	85	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND4--MT-RNR2	5	13	MT-ND4	1843	chrM:11602:+	MT-RNR2	5709	chrM:2001:+	INCL_NON_REF_SPLICE	YES	20781	19627	0	0	0.0497	0.1293	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0	0	0.179	FALSE	13	19	3	21	0	FALSE	ACH-000217
JHH6_LIVER	RP11-96H19.1--RP11-446N19.1	4	17	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	1	0.91	0.95	0.0398	0.1691	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHH6_LIVER	0.91	0.95	0.2089	FALSE	407	2205	196	549	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND1--MT-TL1	6	7	MT-ND1	1342	chrM:3648:+	MT-TL1	5013	chrM:3286:+	INCL_NON_REF_SPLICE	YES	40	0	0.25	1	0.0597	0.0696	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	JHH6_LIVER	0.25	1	0.1293	FALSE	210	95	5	49	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND1--MT-RNR2	4	13	MT-ND1	1296	chrM:3602:+	MT-RNR2	5569	chrM:2283:+	INCL_NON_REF_SPLICE	YES	150	22645	0.1	0	0.0398	0.1293	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0	0.1	0.1691	FALSE	120	26	5	87	0	FALSE	ACH-000217
JHH6_LIVER	MT-TA--MT-TC	4	13	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0.1293	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHH6_LIVER	1	1	0.1691	FALSE	462	80	0	856	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND4--MT-RNR2	3	16	MT-ND4	2009	chrM:11768:+	MT-RNR2	5963	chrM:2255:+	INCL_NON_REF_SPLICE	YES	17612	22030	0	0	0.0298	0.1591	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0	0	0.1889	FALSE	13	19	3	21	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND5--MT-ND6	5	8	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	1	3550	0.93	0	0.0497	0.0796	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	JHH6_LIVER	0	0.93	0.1293	FALSE	26	124	4	93	0	FALSE	ACH-000217
JHH6_LIVER	MT-TA--MT-TN	7	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0696	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH6_LIVER	1	1	0.0696	FALSE	369	2501	205	193	0	FALSE	ACH-000217
JHH6_LIVER	AP1M2--USP54	5	7	AP1M2	10004	chr19:10685093:-	USP54	45723	chr10:75265184:-	ONLY_REF_SPLICE	YES	158	99	0.07	0.11	0.0497	0.0696	AP1M2->adaptor_related_protein_complex_1_mu_2_subunit,chr19:10683347-10697991:-,USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54	JHH6_LIVER	0.07	0.11	0.1193	TRUE	0	0	0	1	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND1--MT-RNR2	5	7	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	107	21620	0.1	0	0.0497	0.0696	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0	0.1	0.1193	FALSE	120	26	5	87	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND4--MT-ND4L	3	15	MT-ND4	1248	chrM:11007:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	129	0	0.12	1	0.0298	0.1492	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH6_LIVER	0.12	1	0.179	FALSE	344	827	44	306	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND4--MT-RNR2	6	3	MT-ND4	1257	chrM:11016:+	MT-RNR2	5445	chrM:1737:+	INCL_NON_REF_SPLICE	YES	15487	0	0	1	0.0597	0.0298	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0	1	0.0895	FALSE	13	19	3	21	0	FALSE	ACH-000217
JHH6_LIVER	IGFBP4--NPM1	6	2	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	2608	1	0	0.89	0.0597	0.0199	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	JHH6_LIVER	0	0.89	0.0796	FALSE	0	0	0	38	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND1--MT-RNR2	4	10	MT-ND1	1272	chrM:3578:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	YES	120	0	0.1	1	0.0398	0.0995	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0.1	1	0.1393	FALSE	114	26	4	85	0	FALSE	ACH-000217
JHH6_LIVER	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0597	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH6_LIVER	1	1	0.0597	FALSE	183	104	9	328	0	FALSE	ACH-000217
JHH6_LIVER	MT-CO3--MT-ATP6	3	12	MT-CO3	1038	chrM:9244:+	MT-ATP6	5225	chrM:8967:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.75	0.0298	0.1193	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHH6_LIVER	0.75	1	0.1491	FALSE	189	492	56	216	0	FALSE	ACH-000217
JHH6_LIVER	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0597	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHH6_LIVER	1	1	0.0597	FALSE	462	80	0	856	0	FALSE	ACH-000217
JHH6_LIVER	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0597	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHH6_LIVER	1	1	0.0597	TRUE	458	1351	185	561	0	FALSE	ACH-000217
JHH6_LIVER	MT-CO2--MT-CO1	5	3	MT-CO2	1278	chrM:7863:+	MT-CO1	5338	chrM:6557:+	INCL_NON_REF_SPLICE	YES	6	31877	0.57	0	0.0497	0.0298	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH6_LIVER	0	0.57	0.0795	FALSE	36	10	0	27	0	FALSE	ACH-000217
JHH6_LIVER	MT-CO3--MT-ATP6	4	7	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0398	0.0696	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHH6_LIVER	0.92	1	0.1094	FALSE	189	492	56	216	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND1--MT-RNR2	4	7	MT-ND1	1227	chrM:3533:+	MT-RNR2	5558	chrM:2272:+	INCL_NON_REF_SPLICE	YES	71	22000	0.13	0	0.0398	0.0696	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0	0.13	0.1094	FALSE	120	26	5	87	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND1--MT-TL1	5	3	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	12	0	0.4	1	0.0497	0.0298	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	JHH6_LIVER	0.4	1	0.0795	FALSE	210	95	5	49	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND4--MT-RNR2	4	7	MT-ND4	1501	chrM:11260:+	MT-RNR2	5918	chrM:2210:+	INCL_NON_REF_SPLICE	YES	22261	22243	0	0	0.0398	0.0696	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0	0	0.1094	FALSE	13	19	3	21	0	FALSE	ACH-000217
JHH6_LIVER	MT-CO3--MT-ATP6	3	10	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0298	0.0995	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHH6_LIVER	0.93	1	0.1293	FALSE	189	492	56	216	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND1--MT-RNR2	3	10	MT-ND1	1291	chrM:3597:+	MT-RNR2	5713	chrM:2427:+	INCL_NON_REF_SPLICE	YES	147	23700	0.08	0	0.0298	0.0995	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0	0.08	0.1293	FALSE	120	26	5	87	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND4--MT-RNR2	5	2	MT-ND4	1212	chrM:10971:+	MT-RNR2	5959	chrM:2251:+	INCL_NON_REF_SPLICE	YES	14494	21254	0	0	0.0497	0.0199	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0	0	0.0696	FALSE	13	19	3	21	0	FALSE	ACH-000217
JHH6_LIVER	RP11-96H19.1--RP11-446N19.1	2	14	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.94	0.94	0.0199	0.1392	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHH6_LIVER	0.94	0.94	0.1591	FALSE	467	2173	244	435	0	FALSE	ACH-000217
JHH6_LIVER	AP1M2--USP54	4	5	AP1M2	8391	chr19:10687874:-	USP54	45723	chr10:75265184:-	ONLY_REF_SPLICE	YES	240	99	0.04	0.08	0.0398	0.0497	AP1M2->adaptor_related_protein_complex_1_mu_2_subunit,chr19:10683347-10697991:-,USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54	JHH6_LIVER	0.04	0.08	0.0895	TRUE	0	0	0	1	0	FALSE	ACH-000217
JHH6_LIVER	FTH1--ACTB	4	5	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	14535	0	0	1	0.0398	0.0497	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	JHH6_LIVER	0	1	0.0895	FALSE	1	0	0	97	0	FALSE	ACH-000217
JHH6_LIVER	LDLRAD3--PRR5L	5	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	17578	chr11:36317840:+	INCL_NON_REF_SPLICE	YES	48	0	0.11	1	0.0497	0.0099	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	JHH6_LIVER	0.11	1	0.0596	FALSE	0	52	1	15	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND1--MT-RNR2	3	9	MT-ND1	1227	chrM:3533:+	MT-RNR2	5001	chrM:1715:+	INCL_NON_REF_SPLICE	YES	71	0	0.14	1	0.0298	0.0895	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0.14	1	0.1193	FALSE	114	26	4	85	0	FALSE	ACH-000217
JHH6_LIVER	MAN2B1--CTC-543D15.3	4	4	MAN2B1	11531	chr19:12762967:-	CTC-543D15.3	20360	chr19:9620216:+	ONLY_REF_SPLICE	YES	152	0	0.05	1	0.0398	0.0398	MAN2B1->chr19:12757325-12777556:-,mannosidase_alpha_class_2B_member_1,CTC-543D15.3->chr19:9609354-9620755:+	JHH6_LIVER	0.05	1	0.0796	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	MT-ATP6--MT-CO1	5	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH6_LIVER	1	1	0.0497	FALSE	183	104	9	328	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND1--MT-RNR2	3	7	MT-ND1	1272	chrM:3578:+	MT-RNR2	5546	chrM:2260:+	INCL_NON_REF_SPLICE	YES	120	21961	0.08	0	0.0298	0.0696	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0	0.08	0.0994	FALSE	120	26	5	87	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND1--MT-TL1	3	7	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0298	0.0696	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	JHH6_LIVER	0.91	1	0.0994	FALSE	210	95	5	49	0	FALSE	ACH-000217
JHH6_LIVER	C11orf68--DRAP1	4	2	C11orf68	1088	chr11:65686501:-	DRAP1	6884	chr11:65687301:+	INCL_NON_REF_SPLICE	YES	0	1321	1	0	0.0398	0.0199	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	JHH6_LIVER	0	1	0.0597	FALSE	0	1	0	6	1	FALSE	ACH-000217
JHH6_LIVER	MT-ND1--MT-RNR2	3	6	MT-ND1	1267	chrM:3573:+	MT-RNR2	6490	chrM:3204:+	INCL_NON_REF_SPLICE	YES	115	2	0.07	0.82	0.0298	0.0597	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0.07	0.82	0.0895	FALSE	92	21	4	61	0	FALSE	ACH-000217
JHH6_LIVER	MT-ATP6--MT-CO1	3	5	MT-ATP6	1560	chrM:9086:+	MT-CO1	4674	chrM:5896:+	INCL_NON_REF_SPLICE	YES	3078	0	0	1	0.0298	0.0497	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH6_LIVER	0	1	0.0795	FALSE	182	97	9	327	0	FALSE	ACH-000217
JHH6_LIVER	MT-CO3--MT-ATP6	4	1	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.71	0.0398	0.0099	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHH6_LIVER	0.71	1	0.0497	FALSE	189	492	56	216	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND4--MT-RNR2	3	5	MT-ND4	1479	chrM:11238:+	MT-RNR2	5959	chrM:2251:+	INCL_NON_REF_SPLICE	YES	21875	21254	0	0	0.0298	0.0497	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0	0	0.0795	FALSE	13	19	3	21	0	FALSE	ACH-000217
JHH6_LIVER	CTD-2337A12.1--CAST	3	4	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	59	1	0.11	0.0298	0.0398	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	JHH6_LIVER	0.11	1	0.0696	TRUE	347	1186	183	220	0	FALSE	ACH-000217
JHH6_LIVER	FTH1--EEF2	3	4	FTH1	1291	chr11:61734842:-	EEF2	9321	chr19:3984322:-	INCL_NON_REF_SPLICE	YES	21440	204	0	0.03	0.0298	0.0398	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	JHH6_LIVER	0	0.03	0.0696	FALSE	0	0	0	1	0	FALSE	ACH-000217
JHH6_LIVER	MT-CO2--MT-CO1	3	4	MT-CO2	1359	chrM:7944:+	MT-CO1	5335	chrM:6554:+	INCL_NON_REF_SPLICE	YES	5	31670	0.58	0	0.0298	0.0398	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH6_LIVER	0	0.58	0.0696	FALSE	36	10	0	27	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND1--MT-TL1	3	3	MT-ND1	1263	chrM:3569:+	MT-TL1	5019	chrM:3292:+	INCL_NON_REF_SPLICE	YES	24	0	0.2	1	0.0298	0.0298	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	JHH6_LIVER	0.2	1	0.0596	FALSE	210	95	5	49	0	FALSE	ACH-000217
JHH6_LIVER	RP11-120D5.1--MID1	3	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	9	138	0.4	0.04	0.0298	0.0298	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHH6_LIVER	0.04	0.4	0.0596	FALSE	16	356	14	466	0	FALSE	ACH-000217
JHH6_LIVER	MT-ND4--MT-RNR2	3	2	MT-ND4	1209	chrM:10968:+	MT-RNR2	5933	chrM:2225:+	INCL_NON_REF_SPLICE	NO	14433	22730	0	0	0.0298	0.0199	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH6_LIVER	0	0	0.0497	FALSE	13	19	3	21	0	FALSE	ACH-000217
JHH6_LIVER	LINC00299--AC007464.1	3	1	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0298	0.0099	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	JHH6_LIVER	0.57	1	0.0397	TRUE	67	49	0	25	0	FALSE	ACH-000217
JHH6_LIVER	MT-ATP6--MT-CO1	3	1	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3824	31869	0	0	0.0298	0.0099	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH6_LIVER	0	0	0.0397	FALSE	183	104	9	328	0	FALSE	ACH-000217
JHH6_LIVER	RP11-444D3.1--SOX5	3	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0.0099	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	JHH6_LIVER	1	1	0.0397	TRUE	274	363	69	150	0	FALSE	ACH-000217
JHH6_LIVER	ADORA2B--UBB	3	0	ADORA2B	1667	chr17:15848897:+	UBB	8656	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0	ADORA2B->adenosine_A2b_receptor,chr17:15848231-15879060:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	JHH6_LIVER	1	1	0.0298	TRUE	0	1	0	5	1	TRUE	ACH-000217
JHH6_LIVER	EEF2--RPS28	3	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JHH6_LIVER	1	1	0.0298	TRUE	0	0	0	100	0	FALSE	ACH-000217
JHH6_LIVER	FRMD4A--SP3	3	0	FRMD4A	4125	chr10:14372057:-	SP3	52043	chr2:174783513:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0	FRMD4A->FERM_domain_containing_4A,chr10:13685706-14504141:-,SP3->Sp3_transcription_factor,chr2:174771187-174830430:-	JHH6_LIVER	1	1	0.0298	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	FTL--RPL39	3	0	FTL	1116	chr19:49468673:+	RPL39	5614	chrX:118925571:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	JHH6_LIVER	1	1	0.0298	TRUE	0	0	0	3	0	TRUE	ACH-000217
JHH6_LIVER	MT-ATP6--MT-CO1	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH6_LIVER	1	1	0.0298	FALSE	183	104	9	328	0	FALSE	ACH-000217
JHH6_LIVER	MT-TA--MT-TN	3	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JHH6_LIVER	1	1	0.0298	FALSE	369	2501	205	193	0	FALSE	ACH-000217
JHH6_LIVER	NCOR2--UBC	2	4	NCOR2	21671	chr12:124882665:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	120	70	0.05	0.08	0.0199	0.0398	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	JHH6_LIVER	0.05	0.08	0.0597	TRUE	30	26	0	16	0	FALSE	ACH-000217
JHH6_LIVER	RP11-155G15.2--RP11-1E3.1	3	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	JHH6_LIVER	1	1	0.0298	FALSE	46	201	11	112	0	FALSE	ACH-000217
JHH6_LIVER	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHH6_LIVER	1	1	0.0298	TRUE	465	1949	224	605	0	FALSE	ACH-000217
JHH6_LIVER	RP11-108K3.1--GLDN	2	3	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	3	1	0.62	0.0199	0.0298	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	JHH6_LIVER	0.62	1	0.0497	FALSE	0	19	0	46	0	FALSE	ACH-000217
JHH6_LIVER	RPSAP52--HMGA2	2	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	8	419	0.33	0.01	0.0199	0.0199	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	JHH6_LIVER	0.01	0.33	0.0398	FALSE	0	59	0	125	0	FALSE	ACH-000217
JHH6_LIVER	PHF14--GRB10	2	1	PHF14	18542	chr7:11101712:+	GRB10	63483	chr7:50663227:-	ONLY_REF_SPLICE	YES	85	245	0.03	0.01	0.0199	0.0099	PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+,GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10	JHH6_LIVER	0.01	0.03	0.0298	FALSE	0	0	0	1	0	FALSE	ACH-000217
JHH6_LIVER	PPP4R1--HNRNPM	2	1	PPP4R1	6029	chr18:9595016:-	HNRNPM	31009	chr19:8520289:+	ONLY_REF_SPLICE	YES	90	1009	0.03	0	0.0199	0.0099	PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M	JHH6_LIVER	0	0.03	0.0298	FALSE	0	0	0	1	0	FALSE	ACH-000217
JHH6_LIVER	C17orf76-AS1--CYHR1	2	0	C17orf76-AS1	1593	chr17:16342728:+	CYHR1	22066	chr8:145678843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	C17orf76-AS1->chr17:16342136-16381992:+,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	JHH6_LIVER	1	1	0.0199	TRUE	0	0	0	2	0	TRUE	ACH-000217
JHH6_LIVER	CHFR--MTX2	2	0	CHFR	2239	chr12:133522207:-	MTX2	36632	chr2:177161588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,MTX2->chr2:177134123-177202753:+,metaxin_2	JHH6_LIVER	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	RABGEF1--IMMP2L	2	0	RABGEF1	1095	chr7:66147245:+	IMMP2L	25513	chr7:111201979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	RABGEF1->RAB_guanine_nucleotide_exchange_factor_1,chr7:66147151-66276451:+,IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2	JHH6_LIVER	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	RBM10--GCFC2	2	0	RBM10	2759	chrX:47006897:+	GCFC2	31751	chr2:75900646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	RBM10->ArcherDX_panel,FoundationOne_panel,RNA_binding_motif_protein_10,chrX:47004268-47046212:+,GCFC2->GC-rich_sequence_DNA-binding_factor_2,chr2:75879126-75938115:-	JHH6_LIVER	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	RCC1--ITGB3BP	2	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	JHH6_LIVER	1	1	0.0199	TRUE	0	6	0	9	2	TRUE	ACH-000217
JHH6_LIVER	TBC1D8--NPAS2	2	0	TBC1D8	8357	chr2:101706716:-	NPAS2	33768	chr2:101541608:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LOCAL_INVERSION:-:+:[10788],TBC1D8->TBC1_domain_family_member_8,chr2:101624079-101869328:-,NPAS2->chr2:101436614-101613291:+,neuronal_PAS_domain_protein_2	JHH6_LIVER	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	JHH6_LIVER	1	1	0.0199	FALSE	272	151	14	158	0	FALSE	ACH-000217
JHH6_LIVER	PRR16--CTD-2334D19.1	1	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	35	0	0.1	1	0.0099	0.0298	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	JHH6_LIVER	0.1	1	0.0397	FALSE	56	216	12	147	0	FALSE	ACH-000217
JHH6_LIVER	AC011530.4--AC074212.3	1	2	AC011530.4	1380	chr19:46288852:-	AC074212.3	9753	chr19:46238635:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0099	0.0199	LOCAL_INVERSION:-:+:[14903],AC011530.4->chr19:46282695-46289231:-,AC074212.3->chr19:46236509-46267792:+	JHH6_LIVER	0.75	1	0.0298	TRUE	0	0	0	1	0	TRUE	ACH-000217
JHH6_LIVER	COL7A1--COL6A3	1	2	COL7A1	26095	chr3:48607313:-	COL6A3	67052	chr2:238258852:-	ONLY_REF_SPLICE	YES	995	960	0	0	0.0099	0.0199	HGNC_GENEFAM,PROTCLUST,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	JHH6_LIVER	0	0	0.0298	FALSE	0	0	0	1	0	FALSE	ACH-000217
JHH6_LIVER	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0099	0.0199	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	JHH6_LIVER	0.75	1	0.0298	FALSE	1	20	0	46	0	FALSE	ACH-000217
JHH6_LIVER	TNFAIP8--HSD17B4	1	2	TNFAIP8	1216	chr5:118604602:+	HSD17B4	19973	chr5:118792010:+	ONLY_REF_SPLICE	YES	110	258	0.03	0.01	0.0099	0.0199	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	JHH6_LIVER	0.01	0.03	0.0298	FALSE	0	0	0	4	0	FALSE	ACH-000217
JHH6_LIVER	ASAP1--UBB	1	1	ASAP1	1201	chr8:131455706:-	UBB	48753	chr17:16285216:+	ONLY_REF_SPLICE	YES	87	252	0.02	0.01	0.0099	0.0099	ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,UBB->chr17:16284112-16286059:+,ubiquitin_B	JHH6_LIVER	0.01	0.02	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000217
JHH6_LIVER	COL7A1--COL6A3	1	1	COL7A1	17349	chr3:48616352:-	COL6A3	59007	chr2:238267731:-	ONLY_REF_SPLICE	NO	962	873	0	0	0.0099	0.0099	HGNC_GENEFAM,PROTCLUST,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	JHH6_LIVER	0	0	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000217
JHH6_LIVER	GLUD1P3--VCL	1	1	GLUD1P3	1312	chr10:75490631:+	VCL	8593	chr10:75802841:+	ONLY_REF_SPLICE	YES	20	1849	0.09	0	0.0099	0.0099	GLUD1P3->chr10:75490320-75497069:+,glutamate_dehydrogenase_1_pseudogene_3,VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin	JHH6_LIVER	0	0.09	0.0198	FALSE	0	0	0	3	0	FALSE	ACH-000217
JHH6_LIVER	MATR3--CTNNA1	1	1	MATR3	9772	chr5:138629494:+	CTNNA1	42412	chr5:138117612:+	ONLY_REF_SPLICE	NO	55	29	0.04	0.06	0.0099	0.0099	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	JHH6_LIVER	0.04	0.06	0.0198	TRUE	0	0	0	2	0	FALSE	ACH-000217
JHH6_LIVER	MYO9B--LONP1	1	1	MYO9B	2996	chr19:17213367:+	LONP1	62215	chr19:5692219:-	ONLY_REF_SPLICE	NO	103	558	0.02	0	0.0099	0.0099	MYO9B->chr19:17186591-17325346:+,myosin_IXB,LONP1->chr19:5691845-5720583:-,lon_peptidase_1,_mitochondrial	JHH6_LIVER	0	0.02	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000217
JHH6_LIVER	NCOR2--UBC	1	1	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	3	70	0.4	0.03	0.0099	0.0099	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	JHH6_LIVER	0.03	0.4	0.0198	TRUE	145	312	16	51	0	FALSE	ACH-000217
JHH6_LIVER	OCLN--TAF9	1	1	OCLN	1609	chr5:68788727:+	TAF9	22293	chr5:68662422:-	ONLY_REF_SPLICE	NO	40	105	0.05	0.02	0.0099	0.0099	OCLN->chr5:68788119-68853931:+,occludin,TAF9->TATA-box_binding_protein_associated_factor_9,chr5:68646811-68665840:-	JHH6_LIVER	0.02	0.05	0.0198	TRUE	0	1	0	1	1	FALSE	ACH-000217
JHH6_LIVER	PHRF1--TSPAN4	1	1	PHRF1	1107	chr11:576592:+	TSPAN4	27638	chr11:862550:+	ONLY_REF_SPLICE	YES	55	1399	0.04	0	0.0099	0.0099	PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,TSPAN4->chr11:842808-867116:+,tetraspanin_4	JHH6_LIVER	0	0.04	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000217
JHH6_LIVER	PRSS23--TMEM135	1	1	PRSS23	8412	chr11:86534635:+	TMEM135	28046	chr11:86868383:+	ONLY_REF_SPLICE	NO	244	47	0.01	0.04	0.0099	0.0099	NEIGHBORS[84934],PRSS23->chr11:86502101-86663952:+,protease,_serine_23,TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135	JHH6_LIVER	0.01	0.04	0.0198	FALSE	0	0	0	2	0	FALSE	ACH-000217
JHH6_LIVER	SLC35E2B--RCC1	1	1	SLC35E2B	9194	chr1:1599766:-	RCC1	18857	chr1:28834640:+	ONLY_REF_SPLICE	YES	119	4	0.02	0.33	0.0099	0.0099	SLC35E2B->chr1:1592939-1624167:-,solute_carrier_family_35_member_E2B,RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1	JHH6_LIVER	0.02	0.33	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000217
JHH6_LIVER	SLC3A2--SQSTM1	1	1	SLC3A2	7002	chr11:62649538:+	SQSTM1	31658	chr5:179263436:+	ONLY_REF_SPLICE	NO	2508	6788	0	0	0.0099	0.0099	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2,SQSTM1->chr5:179233388-179265078:+,sequestosome_1	JHH6_LIVER	0	0	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000217
JHH6_LIVER	VAPA--RAB31	1	1	VAPA	1334	chr18:9914332:+	RAB31	35016	chr18:9845579:+	ONLY_REF_SPLICE	YES	615	107	0	0.02	0.0099	0.0099	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Adrenal_Gland=1,Whole_Blood=1},{Klijn_CCL:Lung=1,Head-Neck=1},LOCAL_REARRANGEMENT:+:[51451],VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+	JHH6_LIVER	0	0.02	0.0198	FALSE	3	3	0	4	0	FALSE	ACH-000217
MKN74_STOMACH	TIMM23B--LINC00843	183	77	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	1.9929	0.8385	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MKN74_STOMACH	1	1	2.8314	TRUE	508	994	45	981	0	FALSE	ACH-000758
MKN74_STOMACH	ITGB4--MYO15B	151	65	ITGB4	22956	chr17:73748658:+	MYO15B	41921	chr17:73598598:+	ONLY_REF_SPLICE	YES	519	3	0.29	0.99	1.6444	0.7078	LOCAL_REARRANGEMENT:+:[94479],ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4,MYO15B->chr17:73584139-73622929:+,myosin_XVB	MKN74_STOMACH	0.29	0.99	2.3522	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	RPS13--PLEKHA7	114	77	RPS13	1620	chr11:17098715:-	PLEKHA7	11102	chr11:16892729:-	ONLY_REF_SPLICE	YES	1255	15	0.13	0.93	1.2415	0.8385	NEIGHBORS[59946],RPS13->chr11:17095936-17099334:-,ribosomal_protein_S13,PLEKHA7->chr11:16799842-17035990:-,pleckstrin_homology_domain_containing_A7	MKN74_STOMACH	0.13	0.93	2.08	FALSE	0	0	0	1	0	FALSE	ACH-000758
MKN74_STOMACH	TIMM23--RP11-464F9.1	100	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	121	8	0.47	0.93	1.089	0.0762	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MKN74_STOMACH	0.47	0.93	1.1652	TRUE	519	3926	326	965	0	FALSE	ACH-000758
MKN74_STOMACH	C15orf57--CBX3	75	44	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	98	16	0.55	0.88	0.8167	0.4792	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MKN74_STOMACH	0.55	0.88	1.2959	TRUE	267	562	48	632	0	FALSE	ACH-000758
MKN74_STOMACH	PLXDC1--TAF13	74	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8059	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	MKN74_STOMACH	1	1	0.8059	TRUE	7	10	0	216	0	FALSE	ACH-000758
MKN74_STOMACH	RERE--RPL22	56	29	RERE	1484	chr1:8877219:-	RPL22	46850	chr1:6257816:-	ONLY_REF_SPLICE	YES	7	25	0.92	0.77	0.6098	0.3158	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22	MKN74_STOMACH	0.77	0.92	0.9256	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	CTD-3138B18.5--CTB-66B24.1	49	41	CTD-3138B18.5	1286	chr19:58789889:-	CTB-66B24.1	8767	chr19:6125545:+	ONLY_REF_SPLICE	YES	15	0	0.86	1	0.5336	0.4465	CTD-3138B18.5->chr19:58768639-58790174:-,CTB-66B24.1->chr19:6109333-6125808:+	MKN74_STOMACH	0.86	1	0.9801	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	SSSCA1-AS1--ERP44	42	16	SSSCA1-AS1	1578	chr11:65337167:-	ERP44	5872	chr9:102822454:-	INCL_NON_REF_SPLICE	YES	0	324	1	0.15	0.4574	0.1742	SSSCA1-AS1->SSSCA1_antisense_RNA_1_(head_to_head),chr11:65337131-65337744:-,ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44	MKN74_STOMACH	0.15	1	0.6316	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	C15orf57--CBX3	19	30	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	95	17	0.34	0.74	0.2069	0.3267	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MKN74_STOMACH	0.34	0.74	0.5336	TRUE	267	562	48	632	0	FALSE	ACH-000758
MKN74_STOMACH	MT-TA--MT-TC	22	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2396	0.0762	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MKN74_STOMACH	1	1	0.3158	FALSE	462	80	0	856	0	FALSE	ACH-000758
MKN74_STOMACH	CCNF--ABCA17P	18	9	CCNF	9310	chr16:2493801:+	ABCA17P	36311	chr16:2436105:+	ONLY_REF_SPLICE	YES	22	0	0.55	1	0.196	0.098	LOCAL_REARRANGEMENT:+:[2695],CCNF->Oncogene{Bushman},chr16:2479395-2508855:+,cyclin_F,ABCA17P->ATP_binding_cassette_subfamily_A_member_17,_pseudogene,chr16:2389151-2476700:+	MKN74_STOMACH	0.55	1	0.294	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	RP11-680G10.1--GSE1	18	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	108	1	0.18	0.196	0.0544	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MKN74_STOMACH	0.18	1	0.2504	TRUE	465	1949	224	605	0	FALSE	ACH-000758
MKN74_STOMACH	DMXL1--TNFAIP8	15	4	DMXL1	26953	chr5:118487731:+	TNFAIP8	68062	chr5:118728511:+	ONLY_REF_SPLICE	YES	14	22	0.58	0.46	0.1633	0.0436	NEIGHBORS[19554],DMXL1->Dmx_like_1,chr5:118373467-118584833:+,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	MKN74_STOMACH	0.46	0.58	0.2069	FALSE	0	0	0	1	0	FALSE	ACH-000758
MKN74_STOMACH	RPS13--PLEKHA7	5	40	RPS13	1620	chr11:17098715:-	PLEKHA7	12186	chr11:16877461:-	ONLY_REF_SPLICE	YES	1255	15	0.03	0.75	0.0544	0.4356	NEIGHBORS[59946],RPS13->chr11:17095936-17099334:-,ribosomal_protein_S13,PLEKHA7->chr11:16799842-17035990:-,pleckstrin_homology_domain_containing_A7	MKN74_STOMACH	0.03	0.75	0.49	FALSE	0	0	0	1	0	FALSE	ACH-000758
MKN74_STOMACH	C15orf57--CBX3	3	44	C15orf57	3338	chr15:40854181:-	CBX3	19796	chr7:26241364:+	INCL_NON_REF_SPLICE	YES	98	16	0.32	0.75	0.0327	0.4792	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MKN74_STOMACH	0.32	0.75	0.5119	TRUE	267	562	48	632	0	FALSE	ACH-000758
MKN74_STOMACH	MB21D2--FGF12	11	6	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	275	13	0.06	0.57	0.1198	0.0653	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	MKN74_STOMACH	0.06	0.57	0.1851	FALSE	0	17	0	46	0	FALSE	ACH-000758
MKN74_STOMACH	RERE--RPL22	4	33	RERE	2669	chr1:8852463:-	RPL22	46850	chr1:6257816:-	ONLY_REF_SPLICE	YES	9	25	0.8	0.6	0.0436	0.3594	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22	MKN74_STOMACH	0.6	0.8	0.403	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	NRIP1--AF127936.7	7	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0762	0.0218	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MKN74_STOMACH	0.9	1	0.098	FALSE	292	1546	117	613	0	FALSE	ACH-000758
MKN74_STOMACH	RP11-123O10.4--GRIP1	7	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0762	0.0109	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MKN74_STOMACH	1	1	0.0871	FALSE	416	2512	207	587	0	FALSE	ACH-000758
MKN74_STOMACH	PCAT1--RP11-382A18.2	6	2	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0653	0.0218	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	MKN74_STOMACH	0.8	1	0.0871	TRUE	4	84	1	46	0	FALSE	ACH-000758
MKN74_STOMACH	RP11-120D5.1--MID1	6	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	88	0.89	0.08	0.0653	0.0218	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MKN74_STOMACH	0.08	0.89	0.0871	FALSE	16	356	14	466	0	FALSE	ACH-000758
MKN74_STOMACH	RP11-680G10.1--GSE1	4	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	62	1	0.16	0.0436	0.0871	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MKN74_STOMACH	0.16	1	0.1307	TRUE	458	1351	185	561	0	FALSE	ACH-000758
MKN74_STOMACH	MT-TA--MT-TC	4	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0.0762	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MKN74_STOMACH	1	1	0.1198	FALSE	462	80	0	856	0	FALSE	ACH-000758
MKN74_STOMACH	NCOR2--UBC	5	3	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	320	198	0.02	0.04	0.0544	0.0327	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	MKN74_STOMACH	0.02	0.04	0.0871	TRUE	52	148	13	33	0	FALSE	ACH-000758
MKN74_STOMACH	SCARB1--UBC	5	3	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	94	198	0.08	0.04	0.0544	0.0327	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	MKN74_STOMACH	0.04	0.08	0.0871	TRUE	55	66	6	101	0	FALSE	ACH-000758
MKN74_STOMACH	COA1--STK17A	5	0	COA1	1289	chr7:43769028:-	STK17A	27976	chr7:43635500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0544	0	NEIGHBORS_OVERLAP:-:+:[18330],COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,STK17A->chr7:43622357-43666385:+,serine/threonine_kinase_17a	MKN74_STOMACH	1	1	0.0544	FALSE	0	3	1	13	0	FALSE	ACH-000758
MKN74_STOMACH	MT-ATP6--MT-CO1	5	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MKN74_STOMACH	1	1	0.0544	FALSE	183	104	9	328	0	FALSE	ACH-000758
MKN74_STOMACH	BAIAP2--ZSWIM8	4	1	BAIAP2	13797	chr17:79060380:+	ZSWIM8	46700	chr10:75561074:+	ONLY_REF_SPLICE	YES	108	157	0.04	0.03	0.0436	0.0109	BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+,ZSWIM8->chr10:75545340-75561551:+,zinc_finger_SWIM-type_containing_8	MKN74_STOMACH	0.03	0.04	0.0545	TRUE	0	0	0	1	0	FALSE	ACH-000758
MKN74_STOMACH	RERE--RPL22	1	13	RERE	1484	chr1:8877219:-	RPL22	47955	chr1:6253114:-	ONLY_REF_SPLICE	YES	7	1108	0.67	0.01	0.0109	0.1416	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22	MKN74_STOMACH	0.01	0.67	0.1525	TRUE	0	0	0	1	0	FALSE	ACH-000758
MKN74_STOMACH	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MKN74_STOMACH	1	1	0.0436	FALSE	462	80	0	856	0	FALSE	ACH-000758
MKN74_STOMACH	PVT1--SNTB1	3	3	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	447	52	0.01	0.1	0.0327	0.0327	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	MKN74_STOMACH	0.01	0.1	0.0654	FALSE	0	0	0	25	0	FALSE	ACH-000758
MKN74_STOMACH	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.0218	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MKN74_STOMACH	1	1	0.0545	FALSE	462	80	0	856	0	FALSE	ACH-000758
MKN74_STOMACH	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.83	0.83	0.0327	0.0218	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MKN74_STOMACH	0.83	0.83	0.0545	FALSE	515	4851	409	746	0	FALSE	ACH-000758
MKN74_STOMACH	RP11-344E13.3--UBBP4	2	5	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	86	0	0.08	1	0.0218	0.0544	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	MKN74_STOMACH	0.08	1	0.0762	TRUE	23	13	0	54	0	FALSE	ACH-000758
MKN74_STOMACH	ARMC4P1--RP11-748L13.2	3	0	ARMC4P1	5853	chr10:27577753:+	RP11-748L13.2	13614	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_INVERSION:+:-:[42533],ARMC4P1->armadillo_repeat_containing_4_pseudogene_1,chr10:27547691-27577753:+,RP11-748L13.2->chr10:27620286-27630181:-	MKN74_STOMACH	1	1	0.0327	TRUE	1	34	11	8	34	TRUE	ACH-000758
MKN74_STOMACH	PPME1--PGM2L1	3	0	PPME1	3142	chr11:73915490:+	PGM2L1	25431	chr11:74085627:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	{Klijn_CCL:Stomach=1},LOCAL_INVERSION:+:-:[75615],PPME1->chr11:73882144-73965748:+,protein_phosphatase_methylesterase_1,PGM2L1->chr11:74041363-74109518:-,phosphoglucomutase_2-like_1	MKN74_STOMACH	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	RP11-108K3.1--GLDN	2	3	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	1	1	0.83	0.83	0.0218	0.0327	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	MKN74_STOMACH	0.83	0.83	0.0545	FALSE	1	20	0	46	0	FALSE	ACH-000758
MKN74_STOMACH	NCOR2--UBC	2	2	NCOR2	11484	chr12:124934361:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	342	198	0.01	0.02	0.0218	0.0218	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	MKN74_STOMACH	0.01	0.02	0.0436	FALSE	12	15	2	11	0	FALSE	ACH-000758
MKN74_STOMACH	SYNRG--RP11-115K3.2	2	2	SYNRG	20601	chr17:35913217:-	RP11-115K3.2	40652	chr17:36233931:-	ONLY_REF_SPLICE	YES	91	0	0.04	1	0.0218	0.0218	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,RP11-115K3.2->chr17:36187925-36244363:-	MKN74_STOMACH	0.04	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	VAPB--APCDD1L-AS1	2	2	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	22387	chr20:57094560:+	ONLY_REF_SPLICE	YES	670	50	0.01	0.07	0.0218	0.0218	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	MKN74_STOMACH	0.01	0.07	0.0436	FALSE	0	0	0	3	0	FALSE	ACH-000758
MKN74_STOMACH	AC002066.1--AC073130.1	2	1	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0.0109	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	MKN74_STOMACH	1	1	0.0327	FALSE	0	1	1	30	0	FALSE	ACH-000758
MKN74_STOMACH	VAPB--APCDD1L-AS1	2	1	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	31664	chr20:57193796:+	ONLY_REF_SPLICE	YES	670	2	0	0.6	0.0218	0.0109	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	MKN74_STOMACH	0	0.6	0.0327	FALSE	2	12	0	8	0	FALSE	ACH-000758
MKN74_STOMACH	AC002066.1--AC073130.1	2	0	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	MKN74_STOMACH	1	1	0.0218	FALSE	0	3	0	33	0	FALSE	ACH-000758
MKN74_STOMACH	ANAPC1--IWS1	2	0	ANAPC1	22321	chr2:112588863:-	IWS1	57004	chr2:128281367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-,IWS1->IWS1,_SUPT6H_interacting_protein,chr2:128193783-128284462:-	MKN74_STOMACH	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	ARHGAP8--SREBF2	2	0	ARHGAP8	10264	chr22:45162069:+	SREBF2	35224	chr22:42269802:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	ARHGAP8->Rho_GTPase_activating_protein_8,chr22:45098355-45258665:+,SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2	MKN74_STOMACH	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	CCNF--ABCA17P	2	0	CCNF	9310	chr16:2493801:+	ABCA17P	37464	chr16:2445841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	LOCAL_REARRANGEMENT:+:[2695],CCNF->Oncogene{Bushman},chr16:2479395-2508855:+,cyclin_F,ABCA17P->ATP_binding_cassette_subfamily_A_member_17,_pseudogene,chr16:2389151-2476700:+	MKN74_STOMACH	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	MKN74_STOMACH	1	1	0.0218	TRUE	2	8	0	24	0	FALSE	ACH-000758
MKN74_STOMACH	CPSF6--ZNF131	2	0	CPSF6	11046	chr12:69656342:+	ZNF131	30348	chr5:43122141:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,ZNF131->chr5:43065278-43192123:+,zinc_finger_protein_131	MKN74_STOMACH	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	HSF2--SERINC1	2	0	HSF2	9230	chr6:122744831:+	SERINC1	17099	chr6:122779826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_FI:{Muscle=[count:2=pct:0.9]},GTEx_v2:{count=3;pct=0.03%;dist=Muscle_-_Skeletal=2,Lung=1},{Klijn_CCL:Head-Neck=1},LOCAL_INVERSION:+:-:[10235],HSF2->chr6:122720691-122754264:+,heat_shock_transcription_factor_2,SERINC1->chr6:122764499-122792967:-,serine_incorporator_1	MKN74_STOMACH	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	IPO7--DENND5A	2	0	IPO7	1226	chr11:9406394:+	DENND5A	33660	chr11:9228329:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Heart_-_Atrial_Appendage=1},IPO7->chr11:9406169-9469673:+,importin_7,DENND5A->DENN_domain_containing_5A,chr11:9160372-9286937:-	MKN74_STOMACH	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	MPP7--WAC	2	0	MPP7	7794	chr10:28527497:-	WAC	39993	chr10:28878665:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	MPP7->chr10:28339922-28623415:-,membrane_palmitoylated_protein_7,WAC->WW_domain_containing_adaptor_with_coiled-coil,chr10:28821422-28912041:+	MKN74_STOMACH	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	RPL9--UBE2K	2	0	RPL9	3543	chr4:39458026:-	UBE2K	15187	chr4:39779980:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},RPL9->chr4:39455744-39460568:-,ribosomal_protein_L9,UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K	MKN74_STOMACH	1	1	0.0218	TRUE	0	0	0	2	0	TRUE	ACH-000758
MKN74_STOMACH	TADA2B--SORCS2	2	0	TADA2B	2647	chr4:7045576:+	SORCS2	14461	chr4:7398015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_FI:{Brain=[count:74=pct:11.2],Blood_Vessel=[count:12=pct:3.3],Nerve=[count:8=pct:4.7],Muscle=[count:6=pct:2.6],Pancreas=[count:5=pct:2.8],Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:3=pct:5.7],Breast=[count:2=pct:1.8],Skin=[count:2=pct:0.6],Thyroid=[count:2=pct:1.1],Colon=[count:2=pct:1.0],Uterus=[count:2=pct:4.7],Testis=[count:1=pct:1.0],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},TADA2B->chr4:7043626-7059679:+,transcriptional_adaptor_2B,SORCS2->chr4:7194265-7744554:+,sortilin_related_VPS10_domain_containing_receptor_2	MKN74_STOMACH	1	1	0.0218	TRUE	95	84	3	6	0	FALSE	ACH-000758
MKN74_STOMACH	RP11-108K3.1--GLDN	1	3	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	1	0.8	0.8	0.0109	0.0327	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	MKN74_STOMACH	0.8	0.8	0.0436	FALSE	0	30	1	55	0	FALSE	ACH-000758
MKN74_STOMACH	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.8	1	0.0109	0.0327	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MKN74_STOMACH	0.8	1	0.0436	FALSE	407	2205	196	549	0	FALSE	ACH-000758
MKN74_STOMACH	PLEKHH1--FAM71D	1	2	PLEKHH1	23058	chr14:68050841:+	FAM71D	38883	chr14:67669811:+	ONLY_REF_SPLICE	YES	29	0	0.09	1	0.0109	0.0218	PLEKHH1->chr14:68000018-68056329:+,pleckstrin_homology,_MyTH4_and_FERM_domain_containing_H1,FAM71D->chr14:67656110-67695267:+,family_with_sequence_similarity_71_member_D	MKN74_STOMACH	0.09	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000758
MKN74_STOMACH	RP11-296O14.3--TNFSF4	1	2	RP11-296O14.3	4452	chr1:173409602:-	TNFSF4	11987	chr1:173157708:-	ONLY_REF_SPLICE	NO	7	2	0.3	0.6	0.0109	0.0218	RP11-296O14.3->chr1:173386932-173430501:-,TNFSF4->chr1:173152873-173176452:-,tumor_necrosis_factor_superfamily_member_4	MKN74_STOMACH	0.3	0.6	0.0327	TRUE	0	7	0	1	7	TRUE	ACH-000758
MKN74_STOMACH	SYNRG--RP11-115K3.2	1	2	SYNRG	20601	chr17:35913217:-	RP11-115K3.2	39597	chr17:36243635:-	ONLY_REF_SPLICE	YES	91	0	0.03	1	0.0109	0.0218	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,RP11-115K3.2->chr17:36187925-36244363:-	MKN74_STOMACH	0.03	1	0.0327	TRUE	0	0	0	1	0	FALSE	ACH-000758
MKN74_STOMACH	CELSR2--ZNF131	1	1	CELSR2	19540	chr1:109816292:+	ZNF131	35075	chr5:43122141:+	ONLY_REF_SPLICE	YES	26	65	0.07	0.03	0.0109	0.0109	CELSR2->cadherin_EGF_LAG_seven-pass_G-type_receptor_2,chr1:109792641-109818372:+,ZNF131->chr5:43065278-43192123:+,zinc_finger_protein_131	MKN74_STOMACH	0.03	0.07	0.0218	TRUE	0	0	0	1	0	FALSE	ACH-000758
MKN74_STOMACH	CHKA--CCND1	1	1	CHKA	13706	chr11:67829420:-	CCND1	24223	chr11:69465886:+	ONLY_REF_SPLICE	YES	159	811	0.01	0	0.0109	0.0109	CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	MKN74_STOMACH	0	0.01	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000758
MKN74_STOMACH	RORA--B2M	1	1	RORA	1267	chr15:61521252:-	B2M	44783	chr15:45007621:+	ONLY_REF_SPLICE	YES	32	98	0.06	0.02	0.0109	0.0109	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Blood=[count:2=pct:1.1],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=3,Skin_-_Sun_Exposed_(Lower_leg)=2},RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	MKN74_STOMACH	0.02	0.06	0.0218	TRUE	0	0	0	1	0	FALSE	ACH-000758
MKN74_STOMACH	TIMM23--RP11-464F9.1	1	1	TIMM23	4782	chr10:51612904:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	NO	150	8	0.01	0.2	0.0109	0.0109	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MKN74_STOMACH	0.01	0.2	0.0218	FALSE	4	2	0	9	0	FALSE	ACH-000758
MKN74_STOMACH	VAPB--APCDD1L-AS1	1	1	VAPB	1396	chr20:56964573:+	APCDD1L-AS1	30269	chr20:57148632:+	ONLY_REF_SPLICE	NO	628	6	0	0.25	0.0109	0.0109	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	MKN74_STOMACH	0	0.25	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000758
HUH1_LIVER	MT-TA--MT-TN	170	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.9378	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH1_LIVER	1	1	1.9378	FALSE	369	2501	205	193	0	FALSE	ACH-000475
HUH1_LIVER	TIMM23B--LINC00843	125	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4249	0.342	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HUH1_LIVER	1	1	1.7669	TRUE	508	994	45	981	0	FALSE	ACH-000475
HUH1_LIVER	NCOA2--LYN	118	30	NCOA2	1106	chr8:71315935:-	LYN	51481	chr8:56922467:+	ONLY_REF_SPLICE	YES	2	36	0.99	0.8	1.3451	0.342	NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,LYN->ArcherDX_panel,FoundationOne_panel,LYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr8:56792372-56923940:+	HUH1_LIVER	0.8	0.99	1.6871	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	MT-TA--MT-TC	84	11	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9575	0.1254	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUH1_LIVER	1	1	1.0829	FALSE	462	80	0	856	0	FALSE	ACH-000475
HUH1_LIVER	TIMM23--RP11-464F9.1	71	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	287	1	0.2	0.99	0.8093	0.0228	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HUH1_LIVER	0.2	0.99	0.8321	TRUE	519	3926	326	965	0	FALSE	ACH-000475
HUH1_LIVER	CASC9--FER1L6-AS2	53	9	CASC9	1521	chr8:76236456:-	FER1L6-AS2	12627	chr8:125059934:-	ONLY_REF_SPLICE	YES	21	0	0.75	1	0.6041	0.1026	HGNC_GENEFAM,CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,FER1L6-AS2->FER1L6_antisense_RNA_2,chr8:125058314-125183763:-	HUH1_LIVER	0.75	1	0.7067	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	RP11-383H13.1--PPP1R42	47	13	RP11-383H13.1	3349	chr8:72756657:+	PPP1R42	40505	chr8:67876569:-	ONLY_REF_SPLICE	YES	13	1	0.82	0.98	0.5357	0.1482	RP11-383H13.1->chr8:72740402-73030628:+,PPP1R42->chr8:67876334-67968839:-,protein_phosphatase_1_regulatory_subunit_42	HUH1_LIVER	0.82	0.98	0.6839	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	MT-ND6--MT-TE	49	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5585	0.0456	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH1_LIVER	1	1	0.6041	FALSE	499	1288	110	792	0	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TN	22	89	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2508	1.0145	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH1_LIVER	1	1	1.2653	FALSE	369	2501	205	193	0	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TN	41	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4674	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH1_LIVER	1	1	0.4674	FALSE	369	2501	205	193	0	FALSE	ACH-000475
HUH1_LIVER	SIK2--C11orf88	33	31	SIK2	3489	chr11:111491126:+	C11orf88	30580	chr11:111404471:+	ONLY_REF_SPLICE	YES	10	0	0.86	1	0.3762	0.3534	LOCAL_REARRANGEMENT:+:[65359],SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2,C11orf88->chr11:111385510-111407756:+,chromosome_11_open_reading_frame_88	HUH1_LIVER	0.86	1	0.7296	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	MT-ATP6--MT-CO2	38	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	91	5	0.32	0.89	0.4332	0.0456	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH1_LIVER	0.32	0.89	0.4788	FALSE	59	21	0	114	0	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TN	23	22	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2622	0.2508	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH1_LIVER	1	1	0.513	FALSE	369	2501	205	193	0	FALSE	ACH-000475
HUH1_LIVER	SPECC1--NTN1	25	9	SPECC1	11569	chr17:20013875:+	NTN1	46748	chr17:9124485:+	ONLY_REF_SPLICE	YES	11	0	0.76	1	0.285	0.1026	SPECC1->Oncogene{Bushman},chr17:19912657-20222339:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1,NTN1->chr17:8924859-9147317:+,netrin_1	HUH1_LIVER	0.76	1	0.3876	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	C15orf57--CBX3	20	26	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	41	12	0.53	0.79	0.228	0.2964	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HUH1_LIVER	0.53	0.79	0.5244	TRUE	267	562	48	632	0	FALSE	ACH-000475
HUH1_LIVER	EMG1--SLC4A8	22	18	EMG1	4516	chr12:7084540:+	SLC4A8	35094	chr12:51864176:+	ONLY_REF_SPLICE	YES	80	0	0.33	1	0.2508	0.2052	EMG1->EMG1_N1-specific_pseudouridine_methyltransferase,chr12:7072408-7105520:+,SLC4A8->chr12:51785101-51902980:+,solute_carrier_family_4_member_8	HUH1_LIVER	0.33	1	0.456	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	MT-TA--MT-TN	8	74	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0912	0.8435	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH1_LIVER	1	1	0.9347	FALSE	369	2501	205	193	0	FALSE	ACH-000475
HUH1_LIVER	MT-ND6--MT-TE	25	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.285	0.0456	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH1_LIVER	1	1	0.3306	FALSE	499	1288	110	792	0	FALSE	ACH-000475
HUH1_LIVER	PLXDC1--TAF13	26	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2964	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HUH1_LIVER	1	1	0.2964	TRUE	7	10	0	216	0	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TN	9	59	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1026	0.6725	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH1_LIVER	1	1	0.7751	FALSE	369	2501	205	193	0	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TN	8	57	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0912	0.6497	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH1_LIVER	1	1	0.7409	FALSE	369	2501	205	193	0	FALSE	ACH-000475
HUH1_LIVER	RALGPS2--LIX1L	20	5	RALGPS2	1255	chr1:178694554:+	LIX1L	31136	chr1:145487304:+	ONLY_REF_SPLICE	YES	10	14	0.71	0.64	0.228	0.057	RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+,LIX1L->chr1:145477085-145501669:+,limb_and_CNS_expressed_1_like	HUH1_LIVER	0.64	0.71	0.285	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	MT-ND6--MT-TE	15	23	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	7	0	0.84	1	0.171	0.2622	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH1_LIVER	0.84	1	0.4332	FALSE	499	1288	110	792	0	FALSE	ACH-000475
HUH1_LIVER	MT-ATP6--MT-CO2	20	2	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	83	3	0.21	0.88	0.228	0.0228	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH1_LIVER	0.21	0.88	0.2508	FALSE	59	21	0	114	0	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TN	11	36	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1254	0.4104	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH1_LIVER	1	1	0.5358	FALSE	369	2501	205	193	0	FALSE	ACH-000475
HUH1_LIVER	METTL13--FCRL4	18	4	METTL13	4433	chr1:171755218:+	FCRL4	18032	chr1:157559248:-	ONLY_REF_SPLICE	YES	145	0	0.13	1	0.2052	0.0456	METTL13->chr1:171750788-171783163:+,methyltransferase_like_13,FCRL4->Fc_receptor_like_4,Oncogene{Bushman},chr1:157543539-157567870:-	HUH1_LIVER	0.13	1	0.2508	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	AL589743.1--RP11-536C10.17	18	1	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	8	0	0.7	1	0.2052	0.0114	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	HUH1_LIVER	0.7	1	0.2166	TRUE	0	33	0	45	33	FALSE	ACH-000475
HUH1_LIVER	AP000525.9--LA16c-60G3.6	18	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	7	0	0.73	1	0.2052	0.0114	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HUH1_LIVER	0.73	1	0.2166	TRUE	0	42	0	133	42	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TC	16	9	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1824	0.1026	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUH1_LIVER	1	1	0.285	FALSE	462	80	0	856	0	FALSE	ACH-000475
HUH1_LIVER	MIB1--BAGE2	17	4	MIB1	8339	chr18:19359646:+	BAGE2	43858	chr21:11039429:-	ONLY_REF_SPLICE	YES	18	0	0.54	1	0.1938	0.0456	MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1,BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-	HUH1_LIVER	0.54	1	0.2394	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	RP11-123O10.4--GRIP1	17	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1938	0.0228	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HUH1_LIVER	1	1	0.2166	FALSE	416	2512	207	587	0	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TN	5	48	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0.5471	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH1_LIVER	1	1	0.6041	FALSE	369	2501	205	193	0	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TN	16	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1824	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH1_LIVER	1	1	0.1824	FALSE	369	2501	205	193	0	FALSE	ACH-000475
HUH1_LIVER	NPM1P24--SET	16	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1824	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HUH1_LIVER	1	1	0.1824	TRUE	0	0	0	434	0	FALSE	ACH-000475
HUH1_LIVER	RP11-444D3.1--SOX5	15	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.171	0.0342	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HUH1_LIVER	1	1	0.2052	TRUE	477	1352	189	275	0	FALSE	ACH-000475
HUH1_LIVER	C15orf57--CBX3	11	18	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	41	12	0.41	0.71	0.1254	0.2052	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HUH1_LIVER	0.41	0.71	0.3306	TRUE	267	562	48	632	0	FALSE	ACH-000475
HUH1_LIVER	LYN--NCOA2	14	6	LYN	14965	chr8:56912108:+	NCOA2	23320	chr8:71209035:-	ONLY_REF_SPLICE	YES	31	3	0.39	0.87	0.1596	0.0684	LYN->ArcherDX_panel,FoundationOne_panel,LYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr8:56792372-56923940:+,NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2	HUH1_LIVER	0.39	0.87	0.228	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	POLR3GL--RP11-428K3.1	13	10	POLR3GL	1123	chr1:145470266:-	RP11-428K3.1	9314	chr1:178694554:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.1482	0.114	POLR3GL->chr1:145456236-145470388:-,polymerase_(RNA)_III_subunit_G_like,RP11-428K3.1->chr1:178693441-178695420:-	HUH1_LIVER	0.92	1	0.2622	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	MT-ND3--MT-ATP8	15	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.171	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH1_LIVER	1	1	0.171	FALSE	351	233	23	137	0	FALSE	ACH-000475
HUH1_LIVER	CLPTM1L--CTD-2231H16.1	13	7	CLPTM1L	8467	chr5:1331914:-	CTD-2231H16.1	23048	chr5:113366:+	ONLY_REF_SPLICE	YES	155	1	0.11	0.95	0.1482	0.0798	CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-,CTD-2231H16.1->chr5:92266-139978:+	HUH1_LIVER	0.11	0.95	0.228	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	MT-ND6--MT-TE	5	36	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	7	0	0.85	1	0.057	0.4104	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH1_LIVER	0.85	1	0.4674	FALSE	499	1288	110	792	0	FALSE	ACH-000475
HUH1_LIVER	SIK2--C11orf88	6	31	SIK2	3489	chr11:111491126:+	C11orf88	29499	chr11:111395608:+	ONLY_REF_SPLICE	YES	10	0	0.79	1	0.0684	0.3534	LOCAL_REARRANGEMENT:+:[65359],SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2,C11orf88->chr11:111385510-111407756:+,chromosome_11_open_reading_frame_88	HUH1_LIVER	0.79	1	0.4218	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	MT-ATP6--MT-CO2	12	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	91	3	0.15	0.84	0.1368	0.0456	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH1_LIVER	0.15	0.84	0.1824	FALSE	59	21	0	114	0	FALSE	ACH-000475
HUH1_LIVER	NUTM2A-AS1--MINPP1	11	8	NUTM2A-AS1	14159	chr10:89048199:-	MINPP1	27523	chr10:89268093:+	ONLY_REF_SPLICE	YES	22	59	0.46	0.24	0.1254	0.0912	GTEx_FI:{Skin=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	HUH1_LIVER	0.24	0.46	0.2166	TRUE	3	1	0	6	0	FALSE	ACH-000475
HUH1_LIVER	MT-ATP6--MT-CO2	12	1	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	74	3	0.15	0.81	0.1368	0.0114	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH1_LIVER	0.15	0.81	0.1482	FALSE	59	21	0	114	0	FALSE	ACH-000475
HUH1_LIVER	MT-ND6--MT-TE	12	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1368	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH1_LIVER	1	1	0.1368	FALSE	499	1288	110	792	0	FALSE	ACH-000475
HUH1_LIVER	SPG11--MRPL52	12	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1368	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	HUH1_LIVER	1	1	0.1368	TRUE	38	11	0	19	0	FALSE	ACH-000475
HUH1_LIVER	RP11-383H13.1--PPP1R42	8	15	RP11-383H13.1	3349	chr8:72756657:+	PPP1R42	39345	chr8:67883375:-	ONLY_REF_SPLICE	YES	13	0	0.64	1	0.0912	0.171	RP11-383H13.1->chr8:72740402-73030628:+,PPP1R42->chr8:67876334-67968839:-,protein_phosphatase_1_regulatory_subunit_42	HUH1_LIVER	0.64	1	0.2622	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	MT-ND6--MT-TE	5	26	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0.2964	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH1_LIVER	1	1	0.3534	FALSE	499	1288	110	792	0	FALSE	ACH-000475
HUH1_LIVER	RP11-383H13.1--PPP1R42	11	0	RP11-383H13.1	1049	chr8:72740450:+	PPP1R42	40505	chr8:67876569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1254	0	RP11-383H13.1->chr8:72740402-73030628:+,PPP1R42->chr8:67876334-67968839:-,protein_phosphatase_1_regulatory_subunit_42	HUH1_LIVER	1	1	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	CLPTM1L--CTD-2231H16.1	9	7	CLPTM1L	9986	chr5:1330395:-	CTD-2231H16.1	23048	chr5:113366:+	ONLY_REF_SPLICE	YES	159	1	0.09	0.94	0.1026	0.0798	CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-,CTD-2231H16.1->chr5:92266-139978:+	HUH1_LIVER	0.09	0.94	0.1824	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	MT-ND6--MT-TE	4	27	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0.3078	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH1_LIVER	1	1	0.3534	FALSE	499	1288	110	792	0	FALSE	ACH-000475
HUH1_LIVER	MT-ND6--MT-TE	4	26	MT-ND6	1199	chrM:14475:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	7	0	0.81	1	0.0456	0.2964	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH1_LIVER	0.81	1	0.342	FALSE	499	1288	110	792	0	FALSE	ACH-000475
HUH1_LIVER	NCOA2--LYN	3	30	NCOA2	2531	chr8:71314398:-	LYN	51481	chr8:56922467:+	ONLY_REF_SPLICE	YES	5	36	0.87	0.48	0.0342	0.342	NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,LYN->ArcherDX_panel,FoundationOne_panel,LYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr8:56792372-56923940:+	HUH1_LIVER	0.48	0.87	0.3762	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	MT-ATP6--MT-CO2	9	5	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	89	3	0.14	0.82	0.1026	0.057	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH1_LIVER	0.14	0.82	0.1596	FALSE	59	21	0	114	0	FALSE	ACH-000475
HUH1_LIVER	NRIP1--AF127936.7	10	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.114	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HUH1_LIVER	1	1	0.114	FALSE	292	1546	117	613	0	FALSE	ACH-000475
HUH1_LIVER	MT-ND6--MT-TE	4	23	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	7	0	0.79	1	0.0456	0.2622	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH1_LIVER	0.79	1	0.3078	FALSE	499	1288	110	792	0	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TC	9	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1026	0.0114	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUH1_LIVER	1	1	0.114	FALSE	462	80	0	856	0	FALSE	ACH-000475
HUH1_LIVER	MT-ND6--MT-TE	9	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1026	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH1_LIVER	1	1	0.1026	FALSE	499	1288	110	792	0	FALSE	ACH-000475
HUH1_LIVER	MT-ND6--MT-TE	3	24	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0342	0.2736	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH1_LIVER	0.93	1	0.3078	FALSE	499	1288	110	792	0	FALSE	ACH-000475
HUH1_LIVER	NUTM2A-AS1--MINPP1	6	9	NUTM2A-AS1	16801	chr10:89005872:-	MINPP1	27523	chr10:89268093:+	ONLY_REF_SPLICE	YES	9	59	0.62	0.2	0.0684	0.1026	GTEx_FI:{Skin=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	HUH1_LIVER	0.2	0.62	0.171	TRUE	1	1	0	6	0	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TN	3	18	MT-TA	1071	chrM:5585:-	MT-TN	4113	chrM:5686:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.2052	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH1_LIVER	1	1	0.2394	FALSE	369	2501	205	193	0	FALSE	ACH-000475
HUH1_LIVER	PHRF1--LRRC56	7	2	PHRF1	9811	chr11:601701:+	LRRC56	27075	chr11:549902:+	ONLY_REF_SPLICE	YES	61	4	0.13	0.69	0.0798	0.0228	LOCAL_REARRANGEMENT:+:[21570],PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,LRRC56->chr11:537527-554916:+,leucine_rich_repeat_containing_56	HUH1_LIVER	0.13	0.69	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	RP11-444D3.1--SOX5	7	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0798	0.0228	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HUH1_LIVER	1	1	0.1026	TRUE	274	363	69	150	0	FALSE	ACH-000475
HUH1_LIVER	PCMTD1--CACNA1E	6	5	PCMTD1	11735	chr8:52744004:-	CACNA1E	28960	chr1:181620474:+	ONLY_REF_SPLICE	YES	28	0	0.28	1	0.0684	0.057	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,CACNA1E->calcium_voltage-gated_channel_subunit_alpha1_E,chr1:181382238-181777219:+	HUH1_LIVER	0.28	1	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	MARVELD1--MEGF8	7	0	MARVELD1	5218	chr10:99477355:+	MEGF8	19401	chr19:42854299:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0798	0	GTEx_FI:{Skin=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},MARVELD1->MARVEL_domain_containing_1,chr10:99472930-99477907:+,MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8	HUH1_LIVER	1	1	0.0798	TRUE	3	138	13	2	0	FALSE	ACH-000475
HUH1_LIVER	MT-ATP6--MT-CO2	6	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	91	2	0.1	0.83	0.0684	0.0456	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH1_LIVER	0.1	0.83	0.114	FALSE	59	21	0	114	0	FALSE	ACH-000475
HUH1_LIVER	MT-ATP6--MT-CO2	3	14	MT-ATP6	1544	chrM:9070:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	5	3	0.77	0.85	0.0342	0.1596	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH1_LIVER	0.77	0.85	0.1938	FALSE	59	21	0	114	0	FALSE	ACH-000475
HUH1_LIVER	SNRPD3--SPECC1L	6	2	SNRPD3	5338	chr22:24968029:+	SPECC1L	32776	chr22:24807556:+	ONLY_REF_SPLICE	YES	33	17	0.2	0.32	0.0684	0.0228	SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide,SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like	HUH1_LIVER	0.2	0.32	0.0912	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	MT-ATP6--MT-CO2	6	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	75	3	0.09	0.7	0.0684	0.0114	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH1_LIVER	0.09	0.7	0.0798	FALSE	59	21	0	114	0	FALSE	ACH-000475
HUH1_LIVER	MT-ND6--MT-TE	4	9	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	5	0	0.72	1	0.0456	0.1026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH1_LIVER	0.72	1	0.1482	FALSE	499	1288	110	792	0	FALSE	ACH-000475
HUH1_LIVER	MT-ATP6--MT-CO2	5	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	91	2	0.09	0.82	0.057	0.0456	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH1_LIVER	0.09	0.82	0.1026	FALSE	59	21	0	114	0	FALSE	ACH-000475
HUH1_LIVER	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0684	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH1_LIVER	1	1	0.0684	FALSE	499	1288	110	792	0	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0684	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH1_LIVER	1	1	0.0684	FALSE	369	2501	205	193	0	FALSE	ACH-000475
HUH1_LIVER	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0684	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HUH1_LIVER	1	1	0.0684	TRUE	465	1949	224	605	0	FALSE	ACH-000475
HUH1_LIVER	SCARB1--UBC	6	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0684	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	HUH1_LIVER	1	1	0.0684	TRUE	55	66	6	101	0	FALSE	ACH-000475
HUH1_LIVER	SIK2--C11orf88	2	16	SIK2	3489	chr11:111491126:+	C11orf88	31246	chr11:111405137:+	ONLY_REF_SPLICE	NO	10	0	0.64	1	0.0228	0.1824	LOCAL_REARRANGEMENT:+:[65359],SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2,C11orf88->chr11:111385510-111407756:+,chromosome_11_open_reading_frame_88	HUH1_LIVER	0.64	1	0.2052	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	PSAP--AKR1B10	5	3	PSAP	2322	chr10:73594129:-	AKR1B10	23169	chr7:134222343:+	INCL_NON_REF_SPLICE	YES	1170	7948	0.01	0	0.057	0.0342	PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,AKR1B10->aldo-keto_reductase_family_1,_member_B10_(aldose_reductase),chr7:134212344-134226160:+	HUH1_LIVER	0	0.01	0.0912	FALSE	0	0	0	1	0	FALSE	ACH-000475
HUH1_LIVER	MACF1--CTSE	5	1	MACF1	36038	chr1:39776672:+	CTSE	127985	chr1:206320201:+	ONLY_REF_SPLICE	YES	11	2	0.35	0.75	0.057	0.0114	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,CTSE->cathepsin_E,chr1:206317459-206332104:+	HUH1_LIVER	0.35	0.75	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	MT-ATP6--MT-CO2	5	1	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	75	5	0.07	0.55	0.057	0.0114	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH1_LIVER	0.07	0.55	0.0684	FALSE	59	21	0	114	0	FALSE	ACH-000475
HUH1_LIVER	MT-ND6--MT-TE	5	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUH1_LIVER	1	1	0.057	FALSE	499	1288	110	792	0	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TC	3	8	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.0912	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUH1_LIVER	1	1	0.1254	FALSE	462	80	0	856	0	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TN	5	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH1_LIVER	1	1	0.057	FALSE	369	2501	205	193	0	FALSE	ACH-000475
HUH1_LIVER	MT-ATP6--MT-CO2	4	2	MT-ATP6	1141	chrM:8667:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	83	3	0.07	0.67	0.0456	0.0228	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH1_LIVER	0.07	0.67	0.0684	FALSE	59	21	0	114	0	FALSE	ACH-000475
HUH1_LIVER	MT-ATP6--MT-CO2	4	1	MT-ATP6	1135	chrM:8661:+	MT-CO2	4824	chrM:7728:+	INCL_NON_REF_SPLICE	YES	84	3	0.06	0.62	0.0456	0.0114	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH1_LIVER	0.06	0.62	0.057	FALSE	59	21	0	114	0	FALSE	ACH-000475
HUH1_LIVER	MT-ND3--MT-ATP8	4	1	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	62	5	0.07	0.5	0.0456	0.0114	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH1_LIVER	0.07	0.5	0.057	FALSE	351	233	23	137	0	FALSE	ACH-000475
HUH1_LIVER	MT-ND3--MT-ATP8	4	1	MT-ND3	1094	chrM:10152:+	MT-ATP8	4474	chrM:8493:+	INCL_NON_REF_SPLICE	YES	335	1191	0.01	0	0.0456	0.0114	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH1_LIVER	0	0.01	0.057	FALSE	351	233	23	137	0	FALSE	ACH-000475
HUH1_LIVER	MT-ATP6--MT-CO2	3	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	NO	91	3	0.07	0.7	0.0342	0.0456	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH1_LIVER	0.07	0.7	0.0798	FALSE	59	21	0	114	0	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH1_LIVER	1	1	0.0456	FALSE	369	2501	205	193	0	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH1_LIVER	1	1	0.0456	FALSE	369	2501	205	193	0	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH1_LIVER	1	1	0.0456	FALSE	369	2501	205	193	0	FALSE	ACH-000475
HUH1_LIVER	MT-ATP6--MT-CO2	3	3	MT-ATP6	1157	chrM:8683:+	MT-CO2	4969	chrM:7873:+	INCL_NON_REF_SPLICE	YES	88	7	0.06	0.46	0.0342	0.0342	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH1_LIVER	0.06	0.46	0.0684	FALSE	59	21	0	114	0	FALSE	ACH-000475
HUH1_LIVER	MT-ATP6--MT-CO2	3	3	MT-ATP6	1317	chrM:8843:+	MT-CO2	4988	chrM:7892:+	INCL_NON_REF_SPLICE	YES	30	4	0.17	0.6	0.0342	0.0342	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH1_LIVER	0.17	0.6	0.0684	FALSE	59	21	0	114	0	FALSE	ACH-000475
HUH1_LIVER	NUTM2A-AS1--MINPP1	2	7	NUTM2A-AS1	7572	chr10:89086387:-	MINPP1	27523	chr10:89268093:+	ONLY_REF_SPLICE	YES	47	59	0.16	0.13	0.0228	0.0798	GTEx_FI:{Skin=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	HUH1_LIVER	0.13	0.16	0.1026	TRUE	3	0	0	3	0	FALSE	ACH-000475
HUH1_LIVER	MT-TA--MT-TC	3	2	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.0228	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUH1_LIVER	1	1	0.057	FALSE	462	80	0	856	0	FALSE	ACH-000475
HUH1_LIVER	MT-ATP6--MT-CO2	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	49	2	0.08	0.67	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH1_LIVER	0.08	0.67	0.0456	FALSE	59	21	0	114	0	FALSE	ACH-000475
HUH1_LIVER	MT-ATP6--MT-CO2	3	1	MT-ATP6	1072	chrM:8598:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	NO	34	4	0.11	0.5	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUH1_LIVER	0.11	0.5	0.0456	FALSE	59	21	0	114	0	FALSE	ACH-000475
HUH1_LIVER	MT-ND3--MT-ATP8	3	1	MT-ND3	1216	chrM:10274:+	MT-ATP8	4384	chrM:8403:+	INCL_NON_REF_SPLICE	YES	1180	0	0	1	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH1_LIVER	0	1	0.0456	FALSE	351	233	23	137	0	FALSE	ACH-000475
HUH1_LIVER	MT-ND3--MT-ATP8	3	1	MT-ND3	1235	chrM:10293:+	MT-ATP8	4436	chrM:8455:+	INCL_NON_REF_SPLICE	YES	591	1	0.01	0.8	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUH1_LIVER	0.01	0.8	0.0456	FALSE	351	233	23	137	0	FALSE	ACH-000475
HUH1_LIVER	CTD-3116E22.6--ZNF274	3	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	HUH1_LIVER	1	1	0.0342	TRUE	0	0	0	13	0	TRUE	ACH-000475
HUH1_LIVER	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HUH1_LIVER	1	1	0.0342	FALSE	369	2501	205	193	0	FALSE	ACH-000475
HUH1_LIVER	RP11-383H13.1--PPP1R42	3	0	RP11-383H13.1	1049	chr8:72740450:+	PPP1R42	39345	chr8:67883375:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	RP11-383H13.1->chr8:72740402-73030628:+,PPP1R42->chr8:67876334-67968839:-,protein_phosphatase_1_regulatory_subunit_42	HUH1_LIVER	1	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	EMG1--SLC4A8	1	7	EMG1	4286	chr12:7084310:+	SLC4A8	35094	chr12:51864176:+	ONLY_REF_SPLICE	NO	109	0	0.07	1	0.0114	0.0798	EMG1->EMG1_N1-specific_pseudouridine_methyltransferase,chr12:7072408-7105520:+,SLC4A8->chr12:51785101-51902980:+,solute_carrier_family_4_member_8	HUH1_LIVER	0.07	1	0.0912	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	CLPTM1L--CTD-2231H16.1	1	6	CLPTM1L	8463	chr5:1331918:-	CTD-2231H16.1	23048	chr5:113366:+	ONLY_REF_SPLICE	NO	148	1	0.05	0.88	0.0114	0.0684	CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-,CTD-2231H16.1->chr5:92266-139978:+	HUH1_LIVER	0.05	0.88	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	CAPN15--NOC4L	2	1	CAPN15	2366	chr16:583998:+	NOC4L	24151	chr12:132635526:+	ONLY_REF_SPLICE	NO	7	86	0.3	0.03	0.0228	0.0114	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},CAPN15->calpain_15,chr16:577717-604636:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	HUH1_LIVER	0.03	0.3	0.0342	TRUE	0	6	0	4	3	TRUE	ACH-000475
HUH1_LIVER	EMG1--SLC4A8	2	1	EMG1	4516	chr12:7084540:+	SLC4A8	37283	chr12:51868126:+	ONLY_REF_SPLICE	YES	80	26	0.04	0.1	0.0228	0.0114	EMG1->EMG1_N1-specific_pseudouridine_methyltransferase,chr12:7072408-7105520:+,SLC4A8->chr12:51785101-51902980:+,solute_carrier_family_4_member_8	HUH1_LIVER	0.04	0.1	0.0342	TRUE	0	0	0	1	0	FALSE	ACH-000475
HUH1_LIVER	ATXN7--THOC7	2	0	ATXN7	5937	chr3:63898901:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	HUH1_LIVER	1	1	0.0228	TRUE	0	4	3	3	1	TRUE	ACH-000475
HUH1_LIVER	BRWD1--CEP192	2	0	BRWD1	4942	chr21:40670358:-	CEP192	87080	chr18:13087016:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,CEP192->centrosomal_protein_192,chr18:12991361-13125051:+	HUH1_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	CTC-260F20.3--CCT3	2	0	CTC-260F20.3	1106	chr19:19627141:+	CCT3	16813	chr1:156304566:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	CTC-260F20.3->chr19:19627036-19646885:+,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	HUH1_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	HPS1--SMARCA4	2	0	HPS1	3352	chr10:100202881:-	SMARCA4	58328	chr19:11150134:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	HPS1->HPS1,_biogenesis_of_lysosomal_organelles_complex_3_subunit_1,chr10:100175955-100206684:-,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	HUH1_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	KIAA0368--PTGR1	2	0	KIAA0368	2242	chr9:114245784:-	PTGR1	59824	chr9:114348445:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	LOCAL_REARRANGEMENT:-:[64977],KIAA0368->KIAA0368,chr9:114122972-114247025:-,PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	HUH1_LIVER	1	1	0.0228	TRUE	0	1	0	1	0	TRUE	ACH-000475
HUH1_LIVER	NPC1--ANKRD29	2	0	NPC1	24261	chr18:21114410:-	ANKRD29	41353	chr18:21218911:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	LOCAL_REARRANGEMENT:-:[12028],NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-,ANKRD29->ankyrin_repeat_domain_29,chr18:21178890-21242849:-	HUH1_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	PTGR1--RPLP1	2	0	PTGR1	12153	chr9:114332371:-	RPLP1	19781	chr15:69745986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	HUH1_LIVER	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	TXN--PTGR1	2	0	TXN	1229	chr9:113018692:-	PTGR1	14662	chr9:114348445:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	TXN->Oncogene{Bushman},chr9:113006091-113018920:-,thioredoxin,PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	HUH1_LIVER	1	1	0.0228	TRUE	0	0	0	3	0	TRUE	ACH-000475
HUH1_LIVER	CLPTM1L--CTD-2231H16.1	1	3	CLPTM1L	6927	chr5:1334404:-	CTD-2231H16.1	23048	chr5:113366:+	ONLY_REF_SPLICE	YES	170	1	0.02	0.8	0.0114	0.0342	CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-,CTD-2231H16.1->chr5:92266-139978:+	HUH1_LIVER	0.02	0.8	0.0456	TRUE	0	0	0	1	0	FALSE	ACH-000475
HUH1_LIVER	CTC-786C10.1--GSE1	1	2	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	28	1	0.1	0.0114	0.0228	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HUH1_LIVER	0.1	1	0.0342	TRUE	2	3	0	21	0	FALSE	ACH-000475
HUH1_LIVER	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0114	0.0228	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HUH1_LIVER	0.43	1	0.0342	FALSE	164	806	69	479	0	FALSE	ACH-000475
HUH1_LIVER	ABCC2--CUTC	1	1	ABCC2	30265	chr10:101606884:+	CUTC	43559	chr10:101507014:+	ONLY_REF_SPLICE	YES	1204	91	0	0.02	0.0114	0.0114	LOCAL_REARRANGEMENT:+:[26598],ABCC2->ATP_binding_cassette_subfamily_C_member_2,chr10:101542489-101611949:+,CUTC->chr10:101462315-101515891:+,cutC_copper_transporter	HUH1_LIVER	0	0.02	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000475
HUH1_LIVER	CPSF6--NR0B1	1	1	CPSF6	11046	chr12:69656342:+	NR0B1	23329	chrX:30322940:-	ONLY_REF_SPLICE	NO	140	773	0.01	0	0.0114	0.0114	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,NR0B1->chrX:30322323-30327715:-,nuclear_receptor_subfamily_0_group_B_member_1	HUH1_LIVER	0	0.01	0.0228	FALSE	0	1	0	8	0	FALSE	ACH-000475
HUH1_LIVER	ITGAV--WDR75	1	1	ITGAV	3767	chr2:187466878:+	WDR75	45537	chr2:190327210:+	ONLY_REF_SPLICE	YES	150	177	0.01	0.01	0.0114	0.0114	ITGAV->chr2:187454792-187545628:+,integrin_subunit_alpha_V,WDR75->WD_repeat_domain_75,chr2:190306159-190340291:+	HUH1_LIVER	0.01	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000475
HUH1_LIVER	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0114	0.0114	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HUH1_LIVER	1	1	0.0228	FALSE	81	155	12	160	0	FALSE	ACH-000475
HUH1_LIVER	RP6-99M1.2--TM4SF2	1	1	RP6-99M1.2	1489	chrX:45629189:-	TM4SF2	11064	chrX:38525375:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0114	0.0114	RP6-99M1.2->chrX:45604639-45629677:-,TM4SF2->chrX:37208583-38546928:+	HUH1_LIVER	0.67	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000475
HUH1_LIVER	TET2--PPA2	1	1	TET2	2105	chr4:106068136:+	PPA2	31604	chr4:106377902:-	ONLY_REF_SPLICE	YES	0	146	1	0.01	0.0114	0.0114	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1,Heart_-_Atrial_Appendage=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[89261],TET2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:106067032-106200973:+,tet_methylcytosine_dioxygenase_2,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	HUH1_LIVER	0.01	1	0.0228	FALSE	0	3	0	2	1	FALSE	ACH-000475
HUH1_LIVER	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0114	0.0114	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HUH1_LIVER	1	1	0.0228	TRUE	62	24	1	171	0	FALSE	ACH-000475
HCC1195_LUNG	LPCAT1--SDHAP3	414	96	LPCAT1	4774	chr5:1494815:-	SDHAP3	32592	chr5:1574410:-	ONLY_REF_SPLICE	YES	671	43	0.43	0.92	3.3861	0.7852	LOCAL_REARRANGEMENT:-:[44545],LPCAT1->chr5:1456595-1524092:-,lysophosphatidylcholine_acyltransferase_1,SDHAP3->chr5:1568637-1594735:-,succinate_dehydrogenase_complex_flavoprotein_subunit_A_pseudogene_3	HCC1195_LUNG	0.43	0.92	4.1713	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	WSB1--STXBP4	189	34	WSB1	7698	chr17:25633908:+	STXBP4	35641	chr17:53218671:+	ONLY_REF_SPLICE	YES	277	4	0.45	0.98	1.5458	0.2781	WSB1->WD_repeat_and_SOCS_box_containing_1,chr17:25621102-25640657:+,STXBP4->chr17:53046088-53241646:+,syntaxin_binding_protein_4	HCC1195_LUNG	0.45	0.98	1.8239	TRUE	0	0	0	2	0	TRUE	ACH-000868
HCC1195_LUNG	TIMM23B--LINC00843	92	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7525	0.139	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1195_LUNG	1	1	0.8915	TRUE	508	994	45	981	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND1--MT-RNR2	71	3	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	NO	54	66	0.58	0.53	0.5807	0.0245	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1195_LUNG	0.53	0.58	0.6052	FALSE	92	22	4	61	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND6--MT-TE	61	9	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4989	0.0736	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1195_LUNG	1	1	0.5725	FALSE	499	1288	110	792	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	26	130	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	4629	0	0.03	1	0.2127	1.0633	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.03	1	1.276	FALSE	344	827	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	TIMM23--RP11-464F9.1	54	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	181	1	0.23	0.98	0.4417	0.0082	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC1195_LUNG	0.23	0.98	0.4499	TRUE	519	3926	326	965	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	5	196	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	18	0	0.92	1	0.0409	1.6031	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.92	1	1.644	FALSE	344	826	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	3	199	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	29	0	0.87	1	0.0245	1.6276	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.87	1	1.6521	FALSE	344	826	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	3	197	MT-ND4	1164	chrM:10923:+	MT-ND4L	5417	chrM:10508:+	INCL_NON_REF_SPLICE	YES	26	0	0.88	1	0.0245	1.6113	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.88	1	1.6358	FALSE	344	826	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	RP11-353N4.6--RP11-403I13.8	48	10	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	133	0	0.3	1	0.3926	0.0818	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	HCC1195_LUNG	0.3	1	0.4744	TRUE	6	2	0	8	0	FALSE	ACH-000868
HCC1195_LUNG	SDHC--NDUFS2	47	9	SDHC	6984	chr1:161310445:+	NDUFS2	20255	chr1:161179647:+	ONLY_REF_SPLICE	YES	566	313	0.09	0.15	0.3844	0.0736	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[99862],SDHC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:161284047-161332984:+,succinate_dehydrogenase_complex_subunit_C,NDUFS2->NADH:ubiquinone_oxidoreductase_core_subunit_S2,chr1:161166894-161184185:+	HCC1195_LUNG	0.09	0.15	0.458	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	RP11-96H19.1--RP11-446N19.1	43	16	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	3	0.92	0.95	0.3517	0.1309	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1195_LUNG	0.92	0.95	0.4826	FALSE	515	4851	409	746	0	FALSE	ACH-000868
HCC1195_LUNG	HECTD1--SCFD1	39	21	HECTD1	3008	chr14:31675003:-	SCFD1	53171	chr14:31107331:+	ONLY_REF_SPLICE	YES	182	425	0.25	0.12	0.319	0.1718	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,SCFD1->chr14:31091318-31205018:+,sec1_family_domain_containing_1	HCC1195_LUNG	0.12	0.25	0.4908	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	9	141	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	7	0	0.96	1	0.0736	1.1533	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.96	1	1.2269	FALSE	344	821	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	10	127	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	NO	36	0	0.79	1	0.0818	1.0387	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.79	1	1.1205	FALSE	344	826	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	8	128	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	12	0	0.92	1	0.0654	1.0469	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.92	1	1.1123	FALSE	344	826	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	RP11-353N4.6--RP11-403I13.8	36	14	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	140	0	0.26	1	0.2944	0.1145	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	HCC1195_LUNG	0.26	1	0.4089	TRUE	6	2	0	8	0	FALSE	ACH-000868
HCC1195_LUNG	PTPN12--CCDC146	36	11	PTPN12	1371	chr7:77166962:+	CCDC146	41802	chr7:76908069:+	ONLY_REF_SPLICE	YES	69	0	0.41	1	0.2944	0.09	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	HCC1195_LUNG	0.41	1	0.3844	TRUE	0	2	0	1	2	TRUE	ACH-000868
HCC1195_LUNG	HSP90AB1--MT-RNR2	38	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3202	0	0.01	1	0.3108	0.0164	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1195_LUNG	0.01	1	0.3272	FALSE	13	9	0	364	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND6--MT-TE	32	10	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2617	0.0818	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1195_LUNG	1	1	0.3435	FALSE	499	1288	110	792	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	3	125	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	56	0	0.7	1	0.0245	1.0224	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.7	1	1.0469	FALSE	344	827	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	MT-TA--MT-TC	32	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2617	0.0491	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1195_LUNG	1	1	0.3108	FALSE	462	80	0	856	0	FALSE	ACH-000868
HCC1195_LUNG	SUZ12P--CRLF3	32	5	SUZ12P	11951	chr17:29096983:+	CRLF3	36039	chr17:29100515:-	ONLY_REF_SPLICE	YES	6	1	0.86	0.97	0.2617	0.0409	NEIGHBORS_OVERLAP:+:-:[21520],SUZ12P->chr17:29036317-29117926:+,CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3	HCC1195_LUNG	0.86	0.97	0.3026	FALSE	11	30	1	7	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	20	30	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6790	0	0.01	1	0.1636	0.2454	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.01	1	0.409	FALSE	344	827	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	MT-TA--MT-TC	26	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2127	0.0409	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1195_LUNG	1	1	0.2536	FALSE	462	80	0	856	0	FALSE	ACH-000868
HCC1195_LUNG	RP11-353N4.6--RP11-403I13.8	24	10	RP11-353N4.6	2221	chr1:149576702:+	RP11-403I13.8	17239	chr1:149291199:+	INCL_NON_REF_SPLICE	YES	143	1	0.19	0.97	0.1963	0.0818	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	HCC1195_LUNG	0.19	0.97	0.2781	TRUE	6	2	0	8	0	FALSE	ACH-000868
HCC1195_LUNG	RP11-96H19.1--RP11-446N19.1	21	20	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.89	1	0.1718	0.1636	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1195_LUNG	0.89	1	0.3354	FALSE	407	2205	196	549	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND6--MT-TE	22	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1799	0.1227	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1195_LUNG	0.97	1	0.3026	FALSE	499	1288	110	792	0	FALSE	ACH-000868
HCC1195_LUNG	MYH9--CTD-3138B18.5	22	10	MYH9	28650	chr22:36692889:-	CTD-3138B18.5	45880	chr19:58771057:-	ONLY_REF_SPLICE	YES	254	11	0.11	0.74	0.1799	0.0818	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,CTD-3138B18.5->chr19:58768639-58790174:-	HCC1195_LUNG	0.11	0.74	0.2617	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	MT-RNR2--MT-TV	18	22	MT-RNR2	1060	chrM:1730:+	MT-TV	5583	chrM:1625:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.1472	0.1799	LOCAL_REARRANGEMENT:+:[1],MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA,MT-TV->chrM:1602-1670:+,mitochondrially_encoded_tRNA_valine	HCC1195_LUNG	0.98	1	0.3271	FALSE	56	134	3	5	0	FALSE	ACH-000868
HCC1195_LUNG	HSP90AB1--MT-RNR2	21	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3249	0	0.01	1	0.1718	0.0164	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1195_LUNG	0.01	1	0.1882	FALSE	13	9	0	364	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	10	46	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	11307	0	0	1	0.0818	0.3762	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0	1	0.458	FALSE	328	800	43	304	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	10	45	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	387	0	0.12	1	0.0818	0.3681	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.12	1	0.4499	FALSE	344	827	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	SUZ12P--CRLF3	19	7	SUZ12P	11951	chr17:29096983:+	CRLF3	35192	chr17:29101362:-	ONLY_REF_SPLICE	YES	6	0	0.81	1	0.1554	0.0573	NEIGHBORS_OVERLAP:+:-:[21520],SUZ12P->chr17:29036317-29117926:+,CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3	HCC1195_LUNG	0.81	1	0.2127	FALSE	11	30	1	7	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND6--MT-TE	12	30	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0981	0.2454	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1195_LUNG	0.98	1	0.3435	FALSE	499	1288	110	792	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	10	30	MT-ND4	1452	chrM:11211:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	196	0	0.17	1	0.0818	0.2454	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.17	1	0.3272	FALSE	344	827	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	5	44	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	32	0	0.6	1	0.0409	0.3599	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.6	1	0.4008	FALSE	344	826	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	4	47	MT-ND4	1023	chrM:10782:+	MT-ND4L	5550	chrM:10641:+	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.0327	0.3844	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.94	1	0.4171	FALSE	344	821	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND6--MT-TE	5	43	MT-ND6	1090	chrM:14584:-	MT-TE	4503	chrM:14765:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0.3517	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1195_LUNG	1	1	0.3926	FALSE	499	1288	110	792	0	FALSE	ACH-000868
HCC1195_LUNG	SDHC--NDUFS2	12	14	SDHC	6984	chr1:161310445:+	NDUFS2	20241	chr1:161179633:+	INCL_NON_REF_SPLICE	YES	566	378	0.04	0.06	0.0981	0.1145	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[99862],SDHC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:161284047-161332984:+,succinate_dehydrogenase_complex_subunit_C,NDUFS2->NADH:ubiquinone_oxidoreductase_core_subunit_S2,chr1:161166894-161184185:+	HCC1195_LUNG	0.04	0.06	0.2126	TRUE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	NEDD4L--MDGA2	14	5	NEDD4L	9460	chr18:55833093:+	MDGA2	65267	chr14:47770753:-	ONLY_REF_SPLICE	YES	23	0	0.45	1	0.1145	0.0409	NEDD4L->chr18:55711599-56068772:+,neural_precursor_cell_expressed,_developmentally_down-regulated_4-like,_E3_ubiquitin_protein_ligase,MDGA2->MAM_domain_containing_glycosylphosphatidylinositol_anchor_2,chr14:47308826-48144157:-,chr14:47311134-48143999:-	HCC1195_LUNG	0.45	1	0.1554	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	MT-TA--MT-TC	15	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1227	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1195_LUNG	1	1	0.1227	FALSE	462	80	0	856	0	FALSE	ACH-000868
HCC1195_LUNG	SNX29--ZNF675	12	11	SNX29	22725	chr16:12371893:+	ZNF675	53329	chr19:23717119:-	ONLY_REF_SPLICE	YES	13	0	0.64	1	0.0981	0.09	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,ZNF675->chr19:23708433-23870022:-,zinc_finger_protein_675	HCC1195_LUNG	0.64	1	0.1881	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	MT-RNR2--MT-TV	3	44	MT-RNR2	1204	chrM:1874:+	MT-TV	5585	chrM:1627:+	INCL_NON_REF_SPLICE	YES	7	0	0.87	1	0.0245	0.3599	LOCAL_REARRANGEMENT:+:[1],MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA,MT-TV->chrM:1602-1670:+,mitochondrially_encoded_tRNA_valine	HCC1195_LUNG	0.87	1	0.3844	FALSE	56	134	3	5	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ATP6--MT-CO1	13	3	MT-ATP6	1244	chrM:8770:+	MT-CO1	4998	chrM:6220:+	INCL_NON_REF_SPLICE	YES	14123	14823	0	0	0.1063	0.0245	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1195_LUNG	0	0	0.1308	FALSE	183	104	9	328	0	FALSE	ACH-000868
HCC1195_LUNG	ATOH8--USP39	12	6	ATOH8	5929	chr2:85991305:+	USP39	25793	chr2:85857844:+	ONLY_REF_SPLICE	YES	0	223	1	0.07	0.0981	0.0491	ATOH8->atonal_bHLH_transcription_factor_8,chr2:85978467-86015189:+,USP39->Oncogene{Bushman},chr2:85829979-85876403:+,ubiquitin_specific_peptidase_39	HCC1195_LUNG	0.07	1	0.1472	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	5	34	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	9	0	0.81	1	0.0409	0.2781	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.81	1	0.319	FALSE	344	826	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND1--MT-RNR2	6	28	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	29	0	0.54	1	0.0491	0.229	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1195_LUNG	0.54	1	0.2781	FALSE	114	26	4	85	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND1--MT-RNR2	12	3	MT-ND1	1323	chrM:3629:+	MT-RNR2	5800	chrM:2514:+	INCL_NON_REF_SPLICE	YES	40	2203	0.27	0.01	0.0981	0.0245	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1195_LUNG	0.01	0.27	0.1226	FALSE	120	26	5	87	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND6--MT-TE	6	27	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0.2208	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1195_LUNG	1	1	0.2699	FALSE	499	1288	110	792	0	FALSE	ACH-000868
HCC1195_LUNG	LPCAT1--CTD-2245E15.3	11	6	LPCAT1	4774	chr5:1494815:-	CTD-2245E15.3	27277	chr5:1548591:-	ONLY_REF_SPLICE	YES	671	0	0.02	1	0.09	0.0491	LOCAL_REARRANGEMENT:-:[20130],LPCAT1->chr5:1456595-1524092:-,lysophosphatidylcholine_acyltransferase_1,CTD-2245E15.3->chr5:1544222-1551825:-	HCC1195_LUNG	0.02	1	0.1391	TRUE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	RP4-565E6.1--HYDIN	12	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0981	0.0082	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HCC1195_LUNG	1	1	0.1063	TRUE	456	1387	91	133	0	FALSE	ACH-000868
HCC1195_LUNG	SNX29--ZNF675	11	5	SNX29	22725	chr16:12371893:+	ZNF675	54467	chr19:23710816:-	ONLY_REF_SPLICE	YES	13	0	0.55	1	0.09	0.0409	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,ZNF675->chr19:23708433-23870022:-,zinc_finger_protein_675	HCC1195_LUNG	0.55	1	0.1309	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	MT-ND1--MT-RNR2	4	28	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	30	0	0.52	1	0.0327	0.229	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1195_LUNG	0.52	1	0.2617	FALSE	114	26	4	85	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	3	31	MT-ND4	2179	chrM:11938:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6962	0	0	1	0.0245	0.2536	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0	1	0.2781	FALSE	310	769	40	302	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	3	30	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	42	0	0.44	1	0.0245	0.2454	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.44	1	0.2699	FALSE	344	827	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	3	30	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	36	0	0.48	1	0.0245	0.2454	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.48	1	0.2699	FALSE	344	826	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	LPCAT1--SDHAP3	8	9	LPCAT1	3545	chr5:1501576:-	SDHAP3	32592	chr5:1574410:-	ONLY_REF_SPLICE	YES	630	43	0.03	0.28	0.0654	0.0736	LOCAL_REARRANGEMENT:-:[44545],LPCAT1->chr5:1456595-1524092:-,lysophosphatidylcholine_acyltransferase_1,SDHAP3->chr5:1568637-1594735:-,succinate_dehydrogenase_complex_flavoprotein_subunit_A_pseudogene_3	HCC1195_LUNG	0.03	0.28	0.139	TRUE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ATP6--MT-CO1	10	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11180	16226	0	0	0.0818	0.0082	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1195_LUNG	0	0	0.09	FALSE	183	104	9	328	0	FALSE	ACH-000868
HCC1195_LUNG	JUP--MT-CO3	9	4	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	756	14577	0.02	0	0.0736	0.0327	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HCC1195_LUNG	0	0.02	0.1063	FALSE	0	0	0	33	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	3	28	MT-ND4	1114	chrM:10873:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12	0	0.72	1	0.0245	0.229	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.72	1	0.2535	FALSE	344	826	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	RP11-96H19.1--RP11-446N19.1	5	20	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.86	1	0.0409	0.1636	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1195_LUNG	0.86	1	0.2045	FALSE	192	492	57	212	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND5--MT-ND6	8	7	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	2	3521	0.88	0	0.0654	0.0573	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HCC1195_LUNG	0	0.88	0.1227	FALSE	26	124	4	93	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	8	5	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0654	0.0409	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	1	1	0.1063	FALSE	344	821	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	ST7--CTTNBP2	8	5	ST7	1454	chr7:116593745:+	CTTNBP2	42906	chr7:117451043:-	ONLY_REF_SPLICE	YES	39	0	0.25	1	0.0654	0.0409	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,CTTNBP2->chr7:117350705-117514193:-,cortactin_binding_protein_2	HCC1195_LUNG	0.25	1	0.1063	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	RPSAP52--HMGA2	8	4	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	2	981	0.86	0.01	0.0654	0.0327	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HCC1195_LUNG	0.01	0.86	0.0981	FALSE	0	59	0	125	0	FALSE	ACH-000868
HCC1195_LUNG	C15orf57--CBX3	7	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	45	44	0.24	0.24	0.0573	0.0573	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1195_LUNG	0.24	0.24	0.1146	TRUE	267	562	48	632	0	FALSE	ACH-000868
HCC1195_LUNG	MT-RNR2--MT-TV	3	23	MT-RNR2	1059	chrM:1729:+	MT-TV	5582	chrM:1624:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0245	0.1881	LOCAL_REARRANGEMENT:+:[1],MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA,MT-TV->chrM:1602-1670:+,mitochondrially_encoded_tRNA_valine	HCC1195_LUNG	0.96	1	0.2126	FALSE	56	134	3	5	0	FALSE	ACH-000868
HCC1195_LUNG	RP11-114H23.1--RP11-114H23.2	8	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0654	0.0245	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC1195_LUNG	1	1	0.0899	FALSE	81	155	12	160	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	4	17	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.0327	0.139	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.91	1	0.1717	FALSE	344	821	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	MT-TC--MT-TY	8	1	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0654	0.0082	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1195_LUNG	1	1	0.0736	FALSE	51	280	19	36	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	3	20	MT-ND4	1093	chrM:10852:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9	0	0.72	1	0.0245	0.1636	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.72	1	0.1881	FALSE	344	826	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	4	16	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	44	0	0.31	1	0.0327	0.1309	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.31	1	0.1636	FALSE	344	827	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND6--MT-TE	5	12	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0.0981	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1195_LUNG	1	1	0.139	FALSE	499	1288	110	792	0	FALSE	ACH-000868
HCC1195_LUNG	RP11-96H19.1--RP11-446N19.1	4	16	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	3	0.83	0.87	0.0327	0.1309	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1195_LUNG	0.83	0.87	0.1636	FALSE	467	2173	244	435	0	FALSE	ACH-000868
HCC1195_LUNG	MT-RNR2--MT-TV	3	19	MT-RNR2	1077	chrM:1747:+	MT-TV	5600	chrM:1642:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0245	0.1554	LOCAL_REARRANGEMENT:+:[1],MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA,MT-TV->chrM:1602-1670:+,mitochondrially_encoded_tRNA_valine	HCC1195_LUNG	0.96	1	0.1799	FALSE	56	134	3	5	0	FALSE	ACH-000868
HCC1195_LUNG	TMEM54--MT-CO2	6	7	TMEM54	2326	chr1:33363811:-	MT-CO2	8517	chrM:7597:+	INCL_NON_REF_SPLICE	YES	1088	0	0.01	1	0.0491	0.0573	TMEM54->chr1:33360195-33367039:-,transmembrane_protein_54,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1195_LUNG	0.01	1	0.1064	FALSE	0	0	0	10	0	FALSE	ACH-000868
HCC1195_LUNG	CALM3--MT-ND4L	7	1	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	254	0	0.03	1	0.0573	0.0082	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.03	1	0.0655	FALSE	1	1	0	107	0	FALSE	ACH-000868
HCC1195_LUNG	ENO1--H1F0	7	0	ENO1	10842	chr1:8924027:-	H1F0	16841	chr22:38201603:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0573	0	ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,H1F0->H1_histone_family_member_0,chr22:38201114-38203442:+	HCC1195_LUNG	1	1	0.0573	TRUE	0	0	0	4	0	TRUE	ACH-000868
HCC1195_LUNG	MT-ATP6--MT-CO1	7	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0573	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1195_LUNG	1	1	0.0573	FALSE	183	104	9	328	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ATP6--MT-CO1	7	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0573	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1195_LUNG	1	1	0.0573	FALSE	183	104	9	328	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND6--MT-TE	7	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0573	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1195_LUNG	1	1	0.0573	FALSE	499	1288	110	792	0	FALSE	ACH-000868
HCC1195_LUNG	RP11-96H19.1--RP11-446N19.1	2	20	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	5	0	0.81	1	0.0164	0.1636	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1195_LUNG	0.81	1	0.18	FALSE	275	511	55	178	0	FALSE	ACH-000868
HCC1195_LUNG	C15orf57--CBX3	5	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	41	49	0.23	0.2	0.0409	0.0573	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1195_LUNG	0.2	0.23	0.0982	TRUE	267	562	48	632	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND6--MT-TE	3	15	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0245	0.1227	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1195_LUNG	0.9	1	0.1472	FALSE	499	1288	110	792	0	FALSE	ACH-000868
HCC1195_LUNG	KIAA0753--MED31	6	1	KIAA0753	14707	chr17:6510193:-	MED31	29454	chr17:6547979:-	ONLY_REF_SPLICE	YES	14	88	0.33	0.07	0.0491	0.0082	LOCAL_REARRANGEMENT:-:[2388],KIAA0753->KIAA0753,chr17:6481468-6544247:-,MED31->chr17:6546635-6554954:-,mediator_complex_subunit_31	HCC1195_LUNG	0.07	0.33	0.0573	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	MT-ND6--MT-TE	3	13	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0245	0.1063	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1195_LUNG	1	1	0.1308	FALSE	499	1288	110	792	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1195_LUNG	1	1	0.0491	FALSE	499	1288	110	792	0	FALSE	ACH-000868
HCC1195_LUNG	NUDT1--HACE1	6	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0491	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	HCC1195_LUNG	1	1	0.0491	TRUE	1	20	0	20	17	FALSE	ACH-000868
HCC1195_LUNG	MT-TA--MT-TC	4	7	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.0573	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1195_LUNG	1	1	0.09	FALSE	462	80	0	856	0	FALSE	ACH-000868
HCC1195_LUNG	PTPN12--CCDC146	3	11	PTPN12	1832	chr7:77167423:+	CCDC146	41802	chr7:76908069:+	ONLY_REF_SPLICE	YES	120	0	0.1	1	0.0245	0.09	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	HCC1195_LUNG	0.1	1	0.1145	TRUE	0	2	0	1	2	TRUE	ACH-000868
HCC1195_LUNG	TAGLN2--MT-ND5	5	2	TAGLN2	6051	chr1:159888574:-	MT-ND5	10461	chrM:13069:+	INCL_NON_REF_SPLICE	YES	1684	3408	0	0	0.0409	0.0164	TAGLN2->chr1:159887897-159895522:-,transgelin_2,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HCC1195_LUNG	0	0	0.0573	FALSE	0	0	0	9	0	FALSE	ACH-000868
HCC1195_LUNG	TAGLN2--MT-ND5	5	2	TAGLN2	6046	chr1:159888579:-	MT-ND5	10456	chrM:13064:+	INCL_NON_REF_SPLICE	YES	1668	3406	0	0	0.0409	0.0164	TAGLN2->chr1:159887897-159895522:-,transgelin_2,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HCC1195_LUNG	0	0	0.0573	FALSE	0	0	0	9	0	FALSE	ACH-000868
HCC1195_LUNG	KIF5B--RP11-545H22.1	5	1	KIF5B	2672	chr10:32337392:-	RP11-545H22.1	27939	chr4:55312593:-	ONLY_REF_SPLICE	YES	172	0	0.03	1	0.0409	0.0082	KIF5B->chr10:32297938-32345359:-,kinesin_family_member_5B,RP11-545H22.1->chr4:55306669-55312890:-	HCC1195_LUNG	0.03	1	0.0491	TRUE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ATP6--MT-CO1	5	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	11180	0	0	1	0.0409	0.0082	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1195_LUNG	0	1	0.0491	FALSE	182	97	9	327	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	5	1	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0409	0.0082	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	0.75	1	0.0491	FALSE	344	821	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	EXOC4--IGH@	5	0	EXOC4	21717	chr7:133314894:+	IGH@	43986	chr14:107218980:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0409	0	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,IGH@->Oncogene{Bushman}	HCC1195_LUNG	1	1	0.0409	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	MT-ATP6--MT-CO1	3	8	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3351	16672	0	0	0.0245	0.0654	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1195_LUNG	0	0	0.0899	FALSE	183	104	9	328	0	FALSE	ACH-000868
HCC1195_LUNG	MT-TC--MT-TY	5	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1195_LUNG	1	1	0.0409	FALSE	51	280	19	36	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND1--MT-RNR2	4	3	MT-ND1	1291	chrM:3597:+	MT-RNR2	5713	chrM:2427:+	INCL_NON_REF_SPLICE	YES	37	7923	0.16	0	0.0327	0.0245	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1195_LUNG	0	0.16	0.0572	FALSE	120	26	5	87	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND1--MT-RNR2	4	3	MT-ND1	1272	chrM:3578:+	MT-RNR2	5546	chrM:2260:+	INCL_NON_REF_SPLICE	YES	30	7532	0.19	0	0.0327	0.0245	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1195_LUNG	0	0.19	0.0572	FALSE	120	26	5	87	0	FALSE	ACH-000868
HCC1195_LUNG	RP11-353N4.6--RP11-403I13.8	1	15	RP11-353N4.6	7562	chr1:149591237:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	NO	134	0	0.11	1	0.0082	0.1227	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	HCC1195_LUNG	0.11	1	0.1309	TRUE	0	0	0	3	0	FALSE	ACH-000868
HCC1195_LUNG	RP11-353N4.6--RP11-403I13.8	1	15	RP11-353N4.6	4795	chr1:149580997:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	136	0	0.11	1	0.0082	0.1227	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	HCC1195_LUNG	0.11	1	0.1309	TRUE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	AKAP13--IDH2	4	2	AKAP13	1228	chr15:85924029:+	IDH2	69410	chr15:90631979:-	ONLY_REF_SPLICE	YES	16	190	0.27	0.03	0.0327	0.0164	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,IDH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr15:90626277-90645736:-,isocitrate_dehydrogenase_(NADP(+))_2,_mitochondrial	HCC1195_LUNG	0.03	0.27	0.0491	TRUE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	ITGAV--ZC3H15	4	1	ITGAV	26233	chr2:187534541:+	ZC3H15	44326	chr2:187370178:+	ONLY_REF_SPLICE	YES	779	399	0.01	0.01	0.0327	0.0082	LOCAL_REARRANGEMENT:+:[80702],ITGAV->chr2:187454792-187545628:+,integrin_subunit_alpha_V,ZC3H15->chr2:187350883-187374090:+,zinc_finger_CCCH-type_containing_15	HCC1195_LUNG	0.01	0.01	0.0409	FALSE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ATP6--MT-CO1	4	1	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	9317	14094	0	0	0.0327	0.0082	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1195_LUNG	0	0	0.0409	FALSE	183	104	9	328	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND6--MT-TE	4	1	MT-ND6	1025	chrM:14649:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.0082	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1195_LUNG	1	1	0.0409	FALSE	499	1288	110	792	0	FALSE	ACH-000868
HCC1195_LUNG	MT-TA--MT-TC	3	5	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0245	0.0409	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1195_LUNG	1	1	0.0654	FALSE	462	80	0	856	0	FALSE	ACH-000868
HCC1195_LUNG	MT-TC--MT-TY	3	5	MT-TC	1065	chrM:5762:-	MT-TY	4101	chrM:5857:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0245	0.0409	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCC1195_LUNG	1	1	0.0654	FALSE	51	280	19	36	0	FALSE	ACH-000868
HCC1195_LUNG	CTD-2251F13.1--PRKD1	4	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	HCC1195_LUNG	1	1	0.0327	TRUE	0	3	0	9	3	TRUE	ACH-000868
HCC1195_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1195_LUNG	1	1	0.0327	FALSE	183	104	9	328	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1195_LUNG	1	1	0.0327	FALSE	499	1288	110	792	0	FALSE	ACH-000868
HCC1195_LUNG	PTPN6--PTMS	4	0	PTPN6	1272	chr12:7055902:+	PTMS	17577	chr12:6878769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	PTPN6->Oncogene{Bushman},chr12:7055631-7070479:+,protein_tyrosine_phosphatase,_non-receptor_type_6,PTMS->chr12:6874682-6880116:+,parathymosin	HCC1195_LUNG	1	1	0.0327	TRUE	0	1	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	SCAF11--PTPRD	4	0	SCAF11	6095	chr12:46357890:-	PTPRD	42946	chr9:9018735:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-,PTPRD->Oncogene{Bushman},chr9:8314246-10612723:-,protein_tyrosine_phosphatase,_receptor_type_D	HCC1195_LUNG	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	LPCAT1--SDHAP3	3	1	LPCAT1	4774	chr5:1494815:-	SDHAP3	34781	chr5:1569113:-	ONLY_REF_SPLICE	YES	671	2	0.01	0.67	0.0245	0.0082	LOCAL_REARRANGEMENT:-:[44545],LPCAT1->chr5:1456595-1524092:-,lysophosphatidylcholine_acyltransferase_1,SDHAP3->chr5:1568637-1594735:-,succinate_dehydrogenase_complex_flavoprotein_subunit_A_pseudogene_3	HCC1195_LUNG	0.01	0.67	0.0327	FALSE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1383	chrM:8909:+	MT-CO1	5905	chrM:7127:+	INCL_NON_REF_SPLICE	YES	12382	15195	0	0	0.0245	0.0082	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1195_LUNG	0	0	0.0327	FALSE	183	104	9	328	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1139	chrM:8665:+	MT-CO1	5217	chrM:6439:+	INCL_NON_REF_SPLICE	YES	9910	14575	0	0	0.0245	0.0082	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1195_LUNG	0	0	0.0327	FALSE	183	104	9	328	0	FALSE	ACH-000868
HCC1195_LUNG	TMEM54--MT-CO2	3	1	TMEM54	2343	chr1:33363794:-	MT-CO2	8585	chrM:7665:+	INCL_NON_REF_SPLICE	YES	1409	1	0	0.8	0.0245	0.0082	TMEM54->chr1:33360195-33367039:-,transmembrane_protein_54,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1195_LUNG	0	0.8	0.0327	FALSE	0	0	0	10	0	FALSE	ACH-000868
HCC1195_LUNG	CTD-2251F13.1--PRKD1	3	0	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	HCC1195_LUNG	1	1	0.0245	TRUE	0	3	0	8	3	TRUE	ACH-000868
HCC1195_LUNG	CTD-2251F13.1--PRKD1	3	0	CTD-2251F13.1	1069	chr14:30766181:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	HCC1195_LUNG	1	1	0.0245	TRUE	0	3	0	9	3	TRUE	ACH-000868
HCC1195_LUNG	EXOC4--IGH@	3	0	EXOC4	21717	chr7:133314894:+	IGH@	45520	chr14:107211242:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,IGH@->Oncogene{Bushman}	HCC1195_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	EXOC4--IGH@	3	0	EXOC4	21717	chr7:133314894:+	IGH@	47060	chr14:107199242:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,IGH@->Oncogene{Bushman}	HCC1195_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0245	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1195_LUNG	1	1	0.0245	FALSE	344	821	44	306	0	FALSE	ACH-000868
HCC1195_LUNG	MT-ND5--MT-ND6	3	0	MT-ND5	2855	chrM:14191:+	MT-ND6	6286	chrM:14200:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0245	0	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HCC1195_LUNG	1	1	0.0245	FALSE	26	124	4	93	0	FALSE	ACH-000868
HCC1195_LUNG	MT-RNR2--MT-TV	3	0	MT-RNR2	1028	chrM:1698:+	MT-TV	5594	chrM:1636:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0245	0	LOCAL_REARRANGEMENT:+:[1],MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA,MT-TV->chrM:1602-1670:+,mitochondrially_encoded_tRNA_valine	HCC1195_LUNG	1	1	0.0245	FALSE	56	134	3	5	0	FALSE	ACH-000868
HCC1195_LUNG	PABPC1--TAGLN2	3	0	PABPC1	2008	chr8:101734030:-	TAGLN2	21666	chr1:159890316:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0245	0	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,TAGLN2->chr1:159887897-159895522:-,transgelin_2	HCC1195_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	PTPN23--NDUFA6	3	0	PTPN23	1170	chr3:47422670:+	NDUFA6	16620	chr22:42483179:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23,NDUFA6->NADH:ubiquinone_oxidoreductase_subunit_A6,chr22:42481529-42486959:-	HCC1195_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	TYMS--SEPT9	3	0	TYMS	4286	chr18:662320:+	SEPT9	45878	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	{Klijn_CCL:Lung=1,Urinary_Bladder=1},TYMS->chr18:657604-673578:+,thymidylate_synthetase,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	HCC1195_LUNG	1	1	0.0245	TRUE	0	9	0	5	1	TRUE	ACH-000868
HCC1195_LUNG	LINC01036--LINC01037	2	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0.0082	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HCC1195_LUNG	1	1	0.0246	FALSE	0	24	0	62	0	FALSE	ACH-000868
HCC1195_LUNG	LPCAT1--SDHAP3	2	1	LPCAT1	3545	chr5:1501576:-	SDHAP3	34781	chr5:1569113:-	ONLY_REF_SPLICE	NO	630	2	0	0.6	0.0164	0.0082	LOCAL_REARRANGEMENT:-:[44545],LPCAT1->chr5:1456595-1524092:-,lysophosphatidylcholine_acyltransferase_1,SDHAP3->chr5:1568637-1594735:-,succinate_dehydrogenase_complex_flavoprotein_subunit_A_pseudogene_3	HCC1195_LUNG	0	0.6	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	TMEM156--KLHL5	2	1	TMEM156	1697	chr4:39033846:-	KLHL5	17467	chr4:39077585:+	ONLY_REF_SPLICE	YES	716	113	0	0.03	0.0164	0.0082	LOCAL_INVERSION:-:+:[12117],TMEM156->chr4:38968365-39034542:-,transmembrane_protein_156,KLHL5->chr4:39046659-39128477:+,kelch_like_family_member_5	HCC1195_LUNG	0	0.03	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	CYP24A1--FAM84B	2	0	CYP24A1	10936	chr20:52773708:-	FAM84B	21312	chr8:127565748:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,FAM84B->chr8:127564687-127570638:-,family_with_sequence_similarity_84_member_B	HCC1195_LUNG	1	1	0.0164	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	HECTD1--SCFD1	1	4	HECTD1	3008	chr14:31675003:-	SCFD1	55382	chr14:31112522:+	ONLY_REF_SPLICE	YES	182	341	0.03	0.01	0.0082	0.0327	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,SCFD1->chr14:31091318-31205018:+,sec1_family_domain_containing_1	HCC1195_LUNG	0.01	0.03	0.0409	FALSE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	LINC00882--CSDE1	2	0	LINC00882	2304	chr3:106848735:-	CSDE1	21424	chr1:115292828:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0	LINC00882->chr3:106555658-106959488:-,long_intergenic_non-protein_coding_RNA_882,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	HCC1195_LUNG	1	1	0.0164	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	LPIN2--MYL12B	2	0	LPIN2	1229	chr18:3013085:-	MYL12B	32733	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0	LPIN2->chr18:2916992-3013313:-,lipin_2,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	HCC1195_LUNG	1	1	0.0164	TRUE	0	1	0	4	0	TRUE	ACH-000868
HCC1195_LUNG	NCOR2--UBC	2	0	NCOR2	3484	chr12:125002686:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HCC1195_LUNG	1	1	0.0164	TRUE	7	26	3	12	0	FALSE	ACH-000868
HCC1195_LUNG	PSEN1--NUMB	2	0	PSEN1	12660	chr14:73640415:+	NUMB	45217	chr14:73763993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0	LOCAL_INVERSION:+:-:[51416],PSEN1->chr14:73603126-73690399:+,presenilin_1,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	HCC1195_LUNG	1	1	0.0164	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	RBM22--CCDC162P	2	0	RBM22	1664	chr5:150080006:-	CCDC162P	30485	chr6:109659651:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0	RBM22->RNA_binding_motif_protein_22,chr5:150070356-150080669:-,CCDC162P->chr6:109612231-109676266:+,coiled-coil_domain_containing_162,_pseudogene	HCC1195_LUNG	1	1	0.0164	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	SCAF11--PTPRD	2	0	SCAF11	2468	chr12:46384136:-	PTPRD	42946	chr9:9018735:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0	SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-,PTPRD->Oncogene{Bushman},chr9:8314246-10612723:-,protein_tyrosine_phosphatase,_receptor_type_D	HCC1195_LUNG	1	1	0.0164	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	SHROOM3--CCNI	2	0	SHROOM3	6004	chr4:77507622:+	CCNI	34951	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0	GTEx&tcga_normals:1/3694=0.03%,SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3,CCNI->chr4:77968311-77997158:-,cyclin_I	HCC1195_LUNG	1	1	0.0164	TRUE	0	1	0	3	0	TRUE	ACH-000868
HCC1195_LUNG	ST3GAL1--NDRG1	2	0	ST3GAL1	1248	chr8:134583936:-	NDRG1	32150	chr8:134296572:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0164	0	GTEx_FI:{Adipose_Tissue=[count:2=pct:0.7],Blood=[count:2=pct:1.1],Esophagus=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,NDRG1->N-myc_downstream_regulated_1,Oncogene{Bushman},chr8:134249414-134314265:-	HCC1195_LUNG	1	1	0.0164	TRUE	6	8	0	2	0	FALSE	ACH-000868
HCC1195_LUNG	WSB1--STXBP4	1	2	WSB1	5351	chr17:25630661:+	STXBP4	36699	chr17:53237158:+	ONLY_REF_SPLICE	NO	299	4	0.01	0.43	0.0082	0.0164	WSB1->WD_repeat_and_SOCS_box_containing_1,chr17:25621102-25640657:+,STXBP4->chr17:53046088-53241646:+,syntaxin_binding_protein_4	HCC1195_LUNG	0.01	0.43	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	ADRBK1--LRP5	1	1	ADRBK1	1403	chr11:67034283:+	LRP5	21765	chr11:68153784:+	ONLY_REF_SPLICE	YES	216	440	0.01	0	0.0082	0.0082	ADRBK1->adrenergic,_beta,_receptor_kinase_1,chr11:67033881-67054027:+,LRP5->LDL_receptor_related_protein_5,Oncogene{Bushman},chr11:68080077-68216743:+	HCC1195_LUNG	0	0.01	0.0164	FALSE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	CBR3-AS1--SEPT9	1	1	CBR3-AS1	6556	chr21:37518554:-	SEPT9	48082	chr17:75483506:+	ONLY_REF_SPLICE	NO	40	373	0.05	0.01	0.0082	0.0082	CBR3-AS1->CBR3_antisense_RNA_1,chr21:37504065-37528615:-,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	HCC1195_LUNG	0.01	0.05	0.0164	FALSE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	EMG1--CSDE1	1	1	EMG1	8550	chr12:7096461:+	CSDE1	20769	chr1:115282346:-	ONLY_REF_SPLICE	NO	1	2644	0.67	0	0.0082	0.0082	EMG1->EMG1_N1-specific_pseudouridine_methyltransferase,chr12:7072408-7105520:+,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	HCC1195_LUNG	0	0.67	0.0164	FALSE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	EXT2--HSD17B12	1	1	EXT2	1304	chr11:44117402:+	HSD17B12	38730	chr11:43772461:+	ONLY_REF_SPLICE	YES	299	127	0.01	0.02	0.0082	0.0082	EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2,HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12	HCC1195_LUNG	0.01	0.02	0.0164	FALSE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	GPBP1L1--NASP	1	1	GPBP1L1	3538	chr1:46151248:-	NASP	29264	chr1:46067927:+	ONLY_REF_SPLICE	YES	257	848	0.01	0	0.0082	0.0082	LOCAL_INVERSION:-:+:[8410],GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-,NASP->chr1:46049518-46084566:+,nuclear_autoantigenic_sperm_protein	HCC1195_LUNG	0	0.01	0.0164	FALSE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	LSAMP--RP11-768G7.2	1	1	LSAMP	1067	chr3:117716029:-	RP11-768G7.2	27686	chr3:117408925:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0082	0.0082	NEIGHBORS_OVERLAP:-:-:[12239],LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein,RP11-768G7.2->chr3:117397540-117409779:-	HCC1195_LUNG	1	1	0.0164	FALSE	0	2	0	3	0	FALSE	ACH-000868
HCC1195_LUNG	LSAMP--RP11-768G7.2	1	1	LSAMP	1067	chr3:117716029:-	RP11-768G7.2	32325	chr3:117397827:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0082	0.0082	NEIGHBORS_OVERLAP:-:-:[12239],LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein,RP11-768G7.2->chr3:117397540-117409779:-	HCC1195_LUNG	1	1	0.0164	FALSE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	MPRIP--EEF1D	1	1	MPRIP	35563	chr17:17083402:+	EEF1D	61463	chr8:144669022:-	ONLY_REF_SPLICE	YES	198	199	0.01	0.01	0.0082	0.0082	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HCC1195_LUNG	0.01	0.01	0.0164	FALSE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	NCOR2--UBC	1	1	NCOR2	25102	chr12:124862783:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	350	55	0.01	0.04	0.0082	0.0082	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HCC1195_LUNG	0.01	0.04	0.0164	FALSE	1	3	0	3	0	FALSE	ACH-000868
HCC1195_LUNG	NCOR2--UBC	1	1	NCOR2	27742	chr12:124856568:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	598	55	0	0.04	0.0082	0.0082	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HCC1195_LUNG	0	0.04	0.0164	FALSE	9	5	3	1	0	FALSE	ACH-000868
HCC1195_LUNG	NEDD1--DZIP1	1	1	NEDD1	15803	chr12:97339627:+	DZIP1	30214	chr13:96277183:-	ONLY_REF_SPLICE	YES	47	6	0.04	0.25	0.0082	0.0082	NEDD1->chr12:97301001-97347129:+,neural_precursor_cell_expressed,_developmentally_down-regulated_1,DZIP1->DAZ_interacting_zinc_finger_protein_1,chr13:96230457-96296957:-	HCC1195_LUNG	0.04	0.25	0.0164	TRUE	0	0	0	1	0	TRUE	ACH-000868
HCC1195_LUNG	RP11-55L4.2--NTN1	1	1	RP11-55L4.2	1090	chr17:9548553:-	NTN1	9252	chr17:9083124:+	ONLY_REF_SPLICE	YES	0	67	1	0.03	0.0082	0.0082	RP11-55L4.2->chr17:9542085-9548642:-,NTN1->chr17:8924859-9147317:+,netrin_1	HCC1195_LUNG	0.03	1	0.0164	TRUE	0	0	0	1	0	FALSE	ACH-000868
HCC1195_LUNG	RP11-624L4.1--RP11-265N7.1	1	1	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0082	0.0082	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	HCC1195_LUNG	0.29	1	0.0164	FALSE	0	20	1	20	0	FALSE	ACH-000868
HCC1195_LUNG	SCAF11--PTPRD	1	1	SCAF11	7253	chr12:46355483:-	PTPRD	42946	chr9:9018735:-	ONLY_REF_SPLICE	YES	38	0	0.05	1	0.0082	0.0082	SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-,PTPRD->Oncogene{Bushman},chr9:8314246-10612723:-,protein_tyrosine_phosphatase,_receptor_type_D	HCC1195_LUNG	0.05	1	0.0164	TRUE	0	0	0	1	0	TRUE	ACH-000868
NCIH1793_LUNG	PEX14--PGD	426	27	PEX14	3457	chr1:10555378:+	PGD	27427	chr1:10477433:+	ONLY_REF_SPLICE	YES	6	1084	0.99	0.29	3.8034	0.2411	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[52144],PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14,PGD->chr1:10458649-10480201:+,phosphogluconate_dehydrogenase	NCIH1793_LUNG	0.29	0.99	4.0445	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	NFAT5--RP11-343C2.11	259	57	NFAT5	2281	chr16:69600277:+	RP11-343C2.11	35524	chr16:69350128:+	ONLY_REF_SPLICE	YES	11	44	0.97	0.88	2.3124	0.5089	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,RP11-343C2.11->chr16:69333585-69354614:+	NCIH1793_LUNG	0.88	0.97	2.8213	TRUE	0	1	0	1	1	TRUE	ACH-000888
NCIH1793_LUNG	ZNF486--RFXANK	205	61	ZNF486	5875	chr19:20307913:+	RFXANK	15200	chr19:19307775:+	INCL_NON_REF_SPLICE	YES	1	157	1	0.63	1.8303	0.5446	ZNF486->chr19:20278037-20311299:+,zinc_finger_protein_486,RFXANK->chr19:19303008-19312678:+,regulatory_factor_X_associated_ankyrin_containing_protein	NCIH1793_LUNG	0.63	1	2.3749	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	KLC1--APOPT1	173	89	KLC1	2407	chr14:104095831:+	APOPT1	26770	chr14:104037960:+	ONLY_REF_SPLICE	YES	138	194	0.66	0.57	1.5446	0.7946	PROTCLUST,NEIGHBORS_OVERLAP:+:+:[44561],KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+	NCIH1793_LUNG	0.57	0.66	2.3392	FALSE	0	0	0	2	0	FALSE	ACH-000888
NCIH1793_LUNG	RUNX1--CTD-2021H9.3	172	35	RUNX1	27252	chr21:36252854:-	CTD-2021H9.3	46954	chr12:71441459:-	ONLY_REF_SPLICE	YES	9	0	0.96	1	1.5357	0.3125	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,CTD-2021H9.3->chr12:71441182-71512027:-	NCIH1793_LUNG	0.96	1	1.8482	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	NFAT5--RP11-343C2.11	97	79	NFAT5	3335	chr16:69602451:+	RP11-343C2.11	35524	chr16:69350128:+	ONLY_REF_SPLICE	YES	11	44	0.94	0.8	0.866	0.7053	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,RP11-343C2.11->chr16:69333585-69354614:+	NCIH1793_LUNG	0.8	0.94	1.5713	TRUE	0	1	0	1	1	TRUE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	93	73	TXNRD1	11664	chr12:104682818:+	RP11-818F20.4	35622	chr12:104565551:+	ONLY_REF_SPLICE	YES	1625	0	0.09	1	0.8303	0.6518	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.09	1	1.4821	TRUE	0	0	0	2	0	TRUE	ACH-000888
NCIH1793_LUNG	WWOX--NUDT7	92	17	WWOX	22276	chr16:78458952:+	NUDT7	33991	chr16:77759328:+	ONLY_REF_SPLICE	YES	13	12	0.89	0.9	0.8214	0.1518	WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,NUDT7->chr16:77756411-77776157:+,nudix_hydrolase_7	NCIH1793_LUNG	0.89	0.9	0.9732	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	TIMM23B--LINC00843	86	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7678	0.0982	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1793_LUNG	1	1	0.866	TRUE	508	994	45	981	0	FALSE	ACH-000888
NCIH1793_LUNG	RUNX1--CTD-2021H9.2	81	19	RUNX1	27252	chr21:36252854:-	CTD-2021H9.2	47197	chr12:71440521:-	ONLY_REF_SPLICE	YES	9	0	0.92	1	0.7232	0.1696	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,CTD-2021H9.2->chr12:71427902-71498306:-	NCIH1793_LUNG	0.92	1	0.8928	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	65	73	TXNRD1	11674	chr12:104682828:+	RP11-818F20.4	35626	chr12:104565555:+	INCL_NON_REF_SPLICE	YES	2008	0	0.06	1	0.5803	0.6518	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.06	1	1.2321	TRUE	0	0	0	2	0	TRUE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	52	56	TXNRD1	11665	chr12:104682819:+	RP11-818F20.4	35677	chr12:104565606:+	INCL_NON_REF_SPLICE	YES	1656	5	0.06	0.96	0.4643	0.5	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.06	0.96	0.9643	TRUE	0	0	0	2	0	TRUE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	6	237	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	35	0	0.87	1	0.0536	2.116	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.87	1	2.1696	FALSE	344	826	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	ZNF486--RFXANK	50	61	ZNF486	5875	chr19:20307913:+	RFXANK	15197	chr19:19307772:+	INCL_NON_REF_SPLICE	YES	1	162	0.99	0.41	0.4464	0.5446	ZNF486->chr19:20278037-20311299:+,zinc_finger_protein_486,RFXANK->chr19:19303008-19312678:+,regulatory_factor_X_associated_ankyrin_containing_protein	NCIH1793_LUNG	0.41	0.99	0.991	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	4	234	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	25	1	0.9	1	0.0357	2.0892	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.9	1	2.1249	FALSE	344	826	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	4	233	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	21	1	0.92	1	0.0357	2.0803	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.92	1	2.116	FALSE	344	826	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	3	236	MT-ND4	1152	chrM:10911:+	MT-ND4L	5417	chrM:10508:+	INCL_NON_REF_SPLICE	NO	28	0	0.9	1	0.0268	2.1071	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.9	1	2.1339	FALSE	344	826	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	3	236	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	28	1	0.9	1	0.0268	2.1071	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.9	1	2.1339	FALSE	344	826	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	3	236	MT-ND4	1147	chrM:10906:+	MT-ND4L	5504	chrM:10595:+	INCL_NON_REF_SPLICE	YES	28	1	0.9	1	0.0268	2.1071	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.9	1	2.1339	FALSE	344	826	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	3	234	MT-ND4	1122	chrM:10881:+	MT-ND4L	5515	chrM:10606:+	INCL_NON_REF_SPLICE	YES	22	1	0.92	1	0.0268	2.0892	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.92	1	2.116	FALSE	344	826	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	3	232	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	17	1	0.93	1	0.0268	2.0713	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.93	1	2.0981	FALSE	344	826	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	8	169	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	12	1	0.94	0.99	0.0714	1.5089	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.94	0.99	1.5803	FALSE	344	821	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	TIMM23--RP11-464F9.1	48	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	184	1	0.21	0.98	0.4286	0.0179	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1793_LUNG	0.21	0.98	0.4465	TRUE	519	3926	326	965	0	FALSE	ACH-000888
NCIH1793_LUNG	CABIN1--AP000351.9	40	16	CABIN1	29373	chr22:24494155:+	AP000351.9	52375	chr22:24368971:+	ONLY_REF_SPLICE	YES	48	0	0.54	1	0.3571	0.1429	LOCAL_REARRANGEMENT:+:[36760],CABIN1->calcineurin_binding_protein_1,chr22:24407642-24574596:+,AP000351.9->chr22:24366750-24370882:+	NCIH1793_LUNG	0.54	1	0.5	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	MT-ND6--MT-TE	40	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.3571	0.0536	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1793_LUNG	0.98	1	0.4107	FALSE	499	1288	110	792	0	FALSE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	25	53	TXNRD1	11664	chr12:104682818:+	RP11-818F20.4	35682	chr12:104565611:+	INCL_NON_REF_SPLICE	YES	1625	6	0.05	0.93	0.2232	0.4732	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.05	0.93	0.6964	TRUE	0	0	0	2	0	TRUE	ACH-000888
NCIH1793_LUNG	CHST11--TXNRD1	35	10	CHST11	2941	chr12:104851292:+	TXNRD1	16694	chr12:104645305:+	ONLY_REF_SPLICE	YES	12	0	0.79	1	0.3125	0.0893	{Klijn_CCL:Ovary=1},CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	NCIH1793_LUNG	0.79	1	0.4018	TRUE	0	0	0	2	0	TRUE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	21	57	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	12413	0	0.01	1	0.1875	0.5089	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.01	1	0.6964	FALSE	328	800	43	304	0	FALSE	ACH-000888
NCIH1793_LUNG	C12orf66--TMEM132B	31	7	C12orf66	3086	chr12:64609458:-	TMEM132B	16327	chr12:125900077:+	ONLY_REF_SPLICE	YES	15	11	0.72	0.78	0.2768	0.0625	{Klijn_CCL:Lung=1},C12orf66->chr12:64580096-64616076:-,chromosome_12_open_reading_frame_66,TMEM132B->chr12:125671382-126146917:+,transmembrane_protein_132B	NCIH1793_LUNG	0.72	0.78	0.3393	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	30	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	11352	5	0	0.87	0.2678	0.0268	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.87	0.2946	FALSE	230	193	14	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	3	102	MT-ND4	1112	chrM:10871:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	20	0	0.84	1	0.0268	0.9107	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.84	1	0.9375	FALSE	344	826	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	26	2	TXNRD1	11664	chr12:104682818:+	RP11-818F20.4	36886	chr12:104571295:+	ONLY_REF_SPLICE	YES	1625	24	0.02	0.54	0.2321	0.0179	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.02	0.54	0.25	TRUE	0	1	0	2	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND6--MT-TE	24	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2143	0.0536	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1793_LUNG	0.97	1	0.2679	FALSE	499	1288	110	792	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	11	56	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	531	0	0.11	1	0.0982	0.5	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.11	1	0.5982	FALSE	344	827	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND6--MT-TE	21	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	26	0	0.59	1	0.1875	0.1429	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1793_LUNG	0.59	1	0.3304	FALSE	499	1288	110	792	0	FALSE	ACH-000888
NCIH1793_LUNG	CHRNB1--TXNDC17	23	5	CHRNB1	4728	chr17:7352107:+	TXNDC17	13135	chr17:6545073:+	ONLY_REF_SPLICE	YES	10	486	0.74	0.05	0.2053	0.0446	CHRNB1->cholinergic_receptor_nicotinic_beta_1_subunit,chr17:7348380-7361026:+,TXNDC17->chr17:6544078-6547861:+,thioredoxin_domain_containing_17	NCIH1793_LUNG	0.05	0.74	0.2499	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	21	13	MT-ND4	2053	chrM:11812:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13721	57	0	0.37	0.1875	0.1161	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.37	0.3036	FALSE	231	215	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	14	34	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	624	0	0.07	1	0.125	0.3036	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.07	1	0.4286	FALSE	344	827	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	3	77	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	12	0	0.87	1	0.0268	0.6875	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.87	1	0.7143	FALSE	344	821	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	NPM1P24--SET	22	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1964	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1793_LUNG	1	1	0.1964	TRUE	0	0	0	434	0	FALSE	ACH-000888
NCIH1793_LUNG	KLC1--APOPT1	17	17	KLC1	2407	chr14:104095831:+	APOPT1	31803	chr14:104053611:+	ONLY_REF_SPLICE	YES	138	201	0.2	0.14	0.1518	0.1518	PROTCLUST,NEIGHBORS_OVERLAP:+:+:[44561],KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+	NCIH1793_LUNG	0.14	0.2	0.3036	FALSE	0	0	0	3	0	FALSE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	2	75	TXNRD1	12166	chr12:104683320:+	RP11-818F20.4	35622	chr12:104565551:+	ONLY_REF_SPLICE	YES	1977	0	0.04	1	0.0179	0.6696	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.04	1	0.6875	TRUE	0	0	0	2	0	TRUE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	6	56	MT-ND4	1144	chrM:10903:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	25	0	0.71	1	0.0536	0.5	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.71	1	0.5536	FALSE	344	826	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	GMCL1--ANXA4	18	7	GMCL1	1511	chr2:70057284:+	ANXA4	27484	chr2:70008652:+	ONLY_REF_SPLICE	YES	26	28	0.49	0.47	0.1607	0.0625	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[3178],GMCL1->chr2:70056774-70108528:+,germ_cell-less,_spermatogenesis_associated_1,ANXA4->annexin_A4,chr2:69871557-70053596:+	NCIH1793_LUNG	0.47	0.49	0.2232	TRUE	0	2	0	2	2	TRUE	ACH-000888
NCIH1793_LUNG	MT-ATP6--MT-CO1	19	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12624	18163	0	0	0.1696	0.0268	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	0	0	0.1964	FALSE	183	104	9	328	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	11	34	MT-ND4	1152	chrM:10911:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	28	0	0.62	1	0.0982	0.3036	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.62	1	0.4018	FALSE	344	826	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	17	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11375	7	0	0.74	0.1518	0.0268	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.74	0.1786	FALSE	230	198	14	283	0	FALSE	ACH-000888
NCIH1793_LUNG	RUNX1--CTD-2021H9.2	13	19	RUNX1	27252	chr21:36252854:-	CTD-2021H9.2	46115	chr12:71463139:-	ONLY_REF_SPLICE	YES	9	0	0.78	1	0.1161	0.1696	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,CTD-2021H9.2->chr12:71427902-71498306:-	NCIH1793_LUNG	0.78	1	0.2857	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	3	56	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	33	0	0.64	1	0.0268	0.5	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.64	1	0.5268	FALSE	344	826	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	4	50	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	2	1	0.96	0.98	0.0357	0.4464	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.96	0.98	0.4821	FALSE	344	821	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	SCAMP4--CTB-31O20.8	14	8	SCAMP4	9564	chr19:1918989:+	CTB-31O20.8	20639	chr19:1861768:+	ONLY_REF_SPLICE	YES	190	6	0.1	0.79	0.125	0.0714	LOCAL_REARRANGEMENT:+:[43195],SCAMP4->Oncogene{Bushman},chr19:1905213-1926016:+,secretory_carrier_membrane_protein_4,CTB-31O20.8->chr19:1860249-1862018:+	NCIH1793_LUNG	0.1	0.79	0.1964	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	RUNX1--PTPRR	15	2	RUNX1	27252	chr21:36252854:-	PTPRR	46178	chr12:71286757:-	ONLY_REF_SPLICE	YES	9	1	0.65	0.94	0.1339	0.0179	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,PTPRR->chr12:71031853-71314623:-,protein_tyrosine_phosphatase,_receptor_type_R	NCIH1793_LUNG	0.65	0.94	0.1518	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	10	18	MT-ND4	1959	chrM:11718:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	15036	0	0	1	0.0893	0.1607	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.25	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	6	34	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	8	0	0.83	1	0.0536	0.3036	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.83	1	0.3572	FALSE	344	821	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	RP11-123O10.4--GRIP1	13	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1161	0.0357	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1793_LUNG	1	1	0.1518	FALSE	416	2512	207	587	0	FALSE	ACH-000888
NCIH1793_LUNG	CHST11--TXNRD1	11	10	CHST11	2956	chr12:104851307:+	TXNRD1	16694	chr12:104645305:+	ONLY_REF_SPLICE	YES	14	0	0.6	1	0.0982	0.0893	{Klijn_CCL:Ovary=1},CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	NCIH1793_LUNG	0.6	1	0.1875	TRUE	0	0	0	2	0	TRUE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	5	34	MT-ND4	1452	chrM:11211:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	254	0	0.13	1	0.0446	0.3036	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.13	1	0.3482	FALSE	344	827	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-TA--MT-TC	13	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1161	0.0179	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1793_LUNG	1	1	0.134	FALSE	462	80	0	856	0	FALSE	ACH-000888
NCIH1793_LUNG	NRIP1--AF127936.7	13	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1161	0.0179	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1793_LUNG	0.94	1	0.134	FALSE	292	1546	117	613	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	4	34	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	55	0	0.41	1	0.0357	0.3036	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.41	1	0.3393	FALSE	344	827	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1071	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1793_LUNG	1	1	0.1071	TRUE	0	0	0	434	0	FALSE	ACH-000888
NCIH1793_LUNG	PEX14--PGD	5	27	PEX14	3457	chr1:10555378:+	PGD	27407	chr1:10477413:+	INCL_NON_REF_SPLICE	YES	6	1190	0.84	0.03	0.0446	0.2411	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[52144],PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14,PGD->chr1:10458649-10480201:+,phosphogluconate_dehydrogenase	NCIH1793_LUNG	0.03	0.84	0.2857	TRUE	0	0	0	1	0	FALSE	ACH-000888
NCIH1793_LUNG	CSNK1G2--CTB-31O20.4	11	1	CSNK1G2	1230	chr19:1941417:+	CTB-31O20.4	17206	chr19:1823014:+	ONLY_REF_SPLICE	YES	0	3	1	0.8	0.0982	0.0089	CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,CTB-31O20.4->chr19:1822088-1824544:+	NCIH1793_LUNG	0.8	1	0.1071	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	10	5	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	15479	566	0	0.03	0.0893	0.0446	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.03	0.1339	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	RP11-6N13.1--CTD-2374C24.1	10	5	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0893	0.0446	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH1793_LUNG	1	1	0.1339	TRUE	5	4	0	46	0	FALSE	ACH-000888
NCIH1793_LUNG	RP5-857K21.11--MTATP6P1	6	21	RP5-857K21.11	1308	chr1:570063:+	MTATP6P1	4828	chr1:569356:+	INCL_NON_REF_SPLICE	NO	15	74	0.64	0.27	0.0536	0.1875	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1793_LUNG	0.27	0.64	0.2411	TRUE	16	42	4	10	0	FALSE	ACH-000888
NCIH1793_LUNG	C15orf57--CBX3	10	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	40	25	0.26	0.36	0.0893	0.0357	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1793_LUNG	0.26	0.36	0.125	TRUE	267	562	48	632	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	11	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0982	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	1	1	0.0982	FALSE	344	821	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND6--MT-TE	6	20	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0536	0.1786	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1793_LUNG	0.96	1	0.2322	FALSE	499	1288	110	792	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	8	11	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13407	57	0	0.25	0.0714	0.0982	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.25	0.1696	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	6	19	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	14	0	0.64	1	0.0536	0.1696	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.64	1	0.2232	FALSE	344	826	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	5	23	MT-ND4	1093	chrM:10852:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	14	0	0.67	1	0.0446	0.2053	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.67	1	0.2499	FALSE	344	826	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND5--MT-CO1	9	7	MT-ND5	2290	chrM:13626:+	MT-CO1	6266	chrM:6357:+	INCL_NON_REF_SPLICE	YES	2093	16449	0.01	0	0.0804	0.0625	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	0	0.01	0.1429	FALSE	8	12	2	9	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	7	14	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4905	57	0	0.27	0.0625	0.125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.27	0.1875	FALSE	218	210	16	281	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	8	10	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13685	7	0	0.72	0.0714	0.0893	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.72	0.1607	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	3	30	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	34	0	0.49	1	0.0268	0.2678	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.49	1	0.2946	FALSE	344	826	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND6--MT-TE	4	25	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	26	0	0.53	1	0.0357	0.2232	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1793_LUNG	0.53	1	0.2589	FALSE	499	1288	110	792	0	FALSE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	9	5	TXNRD1	27532	chr12:104733051:+	RP11-818F20.4	36886	chr12:104571295:+	ONLY_REF_SPLICE	YES	1347	24	0.01	0.37	0.0804	0.0446	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.01	0.37	0.125	TRUE	0	0	0	2	0	FALSE	ACH-000888
NCIH1793_LUNG	ZNF486--RFXANK	7	12	ZNF486	3356	chr19:20296891:+	RFXANK	15200	chr19:19307775:+	ONLY_REF_SPLICE	YES	60	157	0.24	0.11	0.0625	0.1071	ZNF486->chr19:20278037-20311299:+,zinc_finger_protein_486,RFXANK->chr19:19303008-19312678:+,regulatory_factor_X_associated_ankyrin_containing_protein	NCIH1793_LUNG	0.11	0.24	0.1696	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	6	13	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14441	57	0	0.25	0.0536	0.1161	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.25	0.1697	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	4	21	MT-ND4	2283	chrM:12042:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	96	0	0.21	1	0.0357	0.1875	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0.21	1	0.2232	FALSE	213	207	15	279	0	FALSE	ACH-000888
NCIH1793_LUNG	SLC1A5--MT-ND4L	9	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	460	0	0.02	1	0.0804	0.0089	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.02	1	0.0893	FALSE	0	0	0	189	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	5	16	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	13713	0	0	1	0.0446	0.1429	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.1875	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND6--MT-TE	5	16	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.0446	0.1429	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1793_LUNG	0.91	1	0.1875	FALSE	499	1288	110	792	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	5	15	MT-ND4	2332	chrM:12091:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1	57	0.95	0.26	0.0446	0.1339	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0.26	0.95	0.1785	FALSE	209	205	15	279	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	5	15	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	35	0	0.36	1	0.0446	0.1339	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.36	1	0.1785	FALSE	344	826	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	5	15	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	61	0	0.25	1	0.0446	0.1339	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.25	1	0.1785	FALSE	344	827	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	RP5-857K21.11--MTATP6P1	4	19	RP5-857K21.11	1113	chr1:569868:+	MTATP6P1	4646	chr1:569174:+	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0357	0.1696	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1793_LUNG	0.92	1	0.2053	TRUE	16	42	4	10	0	FALSE	ACH-000888
NCIH1793_LUNG	CWC27--NLN	8	2	CWC27	11915	chr5:64100213:+	NLN	28198	chr5:65073254:+	ONLY_REF_SPLICE	YES	20	48	0.33	0.17	0.0714	0.0179	CWC27->CWC27_spliceosome_associated_protein_homolog,chr5:64064757-64314590:+,NLN->chr5:65018023-65167553:+,neurolysin	NCIH1793_LUNG	0.17	0.33	0.0893	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	5	13	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	13785	0	0	1	0.0446	0.1161	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.1607	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	6	9	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	15022	884	0	0.02	0.0536	0.0804	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.02	0.134	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	7	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11352	7	0	0.59	0.0625	0.0268	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.59	0.0893	FALSE	230	193	14	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	4	15	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	35	0	0.35	1	0.0357	0.1339	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	0.35	1	0.1696	FALSE	344	826	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	RUNX1--CTD-2021H9.2	3	19	RUNX1	27252	chr21:36252854:-	CTD-2021H9.2	46131	chr12:71463123:-	INCL_NON_REF_SPLICE	YES	9	0	0.71	1	0.0268	0.1696	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,CTD-2021H9.2->chr12:71427902-71498306:-	NCIH1793_LUNG	0.71	1	0.1964	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	FTH1--ACTB	7	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	8967	8	0	0.53	0.0625	0.0179	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH1793_LUNG	0	0.53	0.0804	FALSE	1	0	0	97	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ATP6--MT-CO1	6	5	MT-ATP6	1244	chrM:8770:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	15724	16599	0	0	0.0536	0.0446	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	0	0	0.0982	FALSE	183	104	9	328	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	5	9	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	14987	0	0	1	0.0446	0.0804	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.125	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	3	17	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	15183	0	0	1	0.0268	0.1518	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.1786	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	4	13	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13285	0	0	1	0.0357	0.1161	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.1518	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	3	17	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	15263	0	0	1	0.0268	0.1518	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.1786	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	SCAMP4--CTB-31O20.8	4	13	SCAMP4	9564	chr19:1918989:+	CTB-31O20.8	20344	chr19:1861473:+	ONLY_REF_SPLICE	YES	190	0	0.08	1	0.0357	0.1161	LOCAL_REARRANGEMENT:+:[43195],SCAMP4->Oncogene{Bushman},chr19:1905213-1926016:+,secretory_carrier_membrane_protein_4,CTB-31O20.8->chr19:1860249-1862018:+	NCIH1793_LUNG	0.08	1	0.1518	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	4	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	14441	205	0	0.07	0.0357	0.1071	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.07	0.1428	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	7	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	1	1	0.0625	FALSE	344	821	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND6--MT-TE	7	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1793_LUNG	1	1	0.0625	FALSE	499	1288	110	792	0	FALSE	ACH-000888
NCIH1793_LUNG	RUNX1--CTD-2021H9.2	5	8	RUNX1	27252	chr21:36252854:-	CTD-2021H9.2	48261	chr12:71428028:-	ONLY_REF_SPLICE	YES	9	0	0.59	1	0.0446	0.0714	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,CTD-2021H9.2->chr12:71427902-71498306:-	NCIH1793_LUNG	0.59	1	0.116	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	3	15	MT-ND4	1777	chrM:11536:+	MT-ATP8	5382	chrM:8369:+	INCL_NON_REF_SPLICE	YES	13471	0	0	1	0.0268	0.1339	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.1607	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	6	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12955	7	0	0.56	0.0536	0.0268	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.56	0.0804	FALSE	231	205	14	283	0	FALSE	ACH-000888
NCIH1793_LUNG	RUNX1--CTD-2021H9.2	2	19	RUNX1	27252	chr21:36252854:-	CTD-2021H9.2	45844	chr12:71463410:-	ONLY_REF_SPLICE	YES	9	0	0.7	1	0.0179	0.1696	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,CTD-2021H9.2->chr12:71427902-71498306:-	NCIH1793_LUNG	0.7	1	0.1875	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	GMCL1--ANXA4	6	2	GMCL1	1511	chr2:70057284:+	ANXA4	30750	chr2:70031665:+	ONLY_REF_SPLICE	YES	26	622	0.24	0.01	0.0536	0.0179	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[3178],GMCL1->chr2:70056774-70108528:+,germ_cell-less,_spermatogenesis_associated_1,ANXA4->annexin_A4,chr2:69871557-70053596:+	NCIH1793_LUNG	0.01	0.24	0.0715	FALSE	0	2	0	2	2	FALSE	ACH-000888
NCIH1793_LUNG	KSR2--FBXO21	6	1	KSR2	4200	chr12:118293233:-	FBXO21	47851	chr12:117615446:-	ONLY_REF_SPLICE	YES	1	15	0.88	0.32	0.0536	0.0089	KSR2->chr12:117890817-118406788:-,kinase_suppressor_of_ras_2,FBXO21->F-box_protein_21,chr12:117581146-117628336:-	NCIH1793_LUNG	0.32	0.88	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	MT-ND5--MT-CO1	4	9	MT-ND5	2653	chrM:13989:+	MT-CO1	6235	chrM:6326:+	INCL_NON_REF_SPLICE	YES	1626	16502	0.01	0	0.0357	0.0804	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	0	0.01	0.1161	FALSE	8	12	2	9	0	FALSE	ACH-000888
NCIH1793_LUNG	RP11-476K15.1--CTD-2015H3.2	6	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.0536	0.0089	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCIH1793_LUNG	0.7	1	0.0625	FALSE	0	46	0	73	0	FALSE	ACH-000888
NCIH1793_LUNG	EEF2--RPS28	6	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH1793_LUNG	1	1	0.0536	TRUE	0	0	0	100	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	3	12	MT-ND4	2103	chrM:11862:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	11864	566	0	0.03	0.0268	0.1071	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.03	0.1339	FALSE	231	215	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	NRIP1--AF127936.7	5	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.47	1	0.0446	0.0357	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1793_LUNG	0.47	1	0.0803	FALSE	164	806	69	479	0	FALSE	ACH-000888
NCIH1793_LUNG	RP5-857K21.11--MTATP6P1	6	0	RP5-857K21.11	1028	chr1:569783:+	MTATP6P1	5197	chr1:569725:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1793_LUNG	1	1	0.0536	TRUE	16	42	4	10	0	FALSE	ACH-000888
NCIH1793_LUNG	FTH1--ACTB	5	3	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	9838	7	0	0.53	0.0446	0.0268	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH1793_LUNG	0	0.53	0.0714	FALSE	1	0	0	97	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	4	7	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15033	5	0	0.69	0.0357	0.0625	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.69	0.0982	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	4	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	YES	13685	942	0	0.01	0.0357	0.0625	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.01	0.0982	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	4	7	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	NO	13576	1010	0	0.01	0.0357	0.0625	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.01	0.0982	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	3	11	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	14479	0	0	1	0.0268	0.0982	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.125	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	3	11	MT-ND4	1544	chrM:11303:+	MT-ATP8	5455	chrM:8442:+	INCL_NON_REF_SPLICE	YES	15986	0	0	1	0.0268	0.0982	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.125	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	PEX14--PGD	4	7	PEX14	3457	chr1:10555378:+	PGD	28575	chr1:10478883:+	ONLY_REF_SPLICE	YES	6	1028	0.65	0.01	0.0357	0.0625	{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:+:[52144],PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14,PGD->chr1:10458649-10480201:+,phosphogluconate_dehydrogenase	NCIH1793_LUNG	0.01	0.65	0.0982	FALSE	0	0	0	1	0	FALSE	ACH-000888
NCIH1793_LUNG	WWOX--NUDT7	5	3	WWOX	22276	chr16:78458952:+	NUDT7	37771	chr16:77775479:+	ONLY_REF_SPLICE	YES	13	68	0.38	0.11	0.0446	0.0268	WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,NUDT7->chr16:77756411-77776157:+,nudix_hydrolase_7	NCIH1793_LUNG	0.11	0.38	0.0714	TRUE	0	1	0	1	1	TRUE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	14464	0	0	1	0.0268	0.0893	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.1161	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	14479	0	0	1	0.0268	0.0893	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.1161	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	4	6	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	13847	1625	0	0.01	0.0357	0.0536	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.01	0.0893	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	4	6	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	14733	0	0	1	0.0357	0.0536	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.0893	FALSE	231	216	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND5--MT-CO1	3	9	MT-ND5	2693	chrM:14029:+	MT-CO1	6298	chrM:6389:+	INCL_NON_REF_SPLICE	YES	543	16798	0.02	0	0.0268	0.0804	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	0	0.02	0.1072	FALSE	8	12	2	9	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ATP6--MT-CO1	5	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	1	1	0.0446	FALSE	183	104	9	328	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	4	4	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	6478	0	0	1	0.0357	0.0357	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.0714	FALSE	230	193	14	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	4	4	MT-ND4	1220	chrM:10979:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11495	0	0	1	0.0357	0.0357	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.0714	FALSE	231	204	14	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	4	4	MT-ND4	1260	chrM:11019:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	12211	0	0	1	0.0357	0.0357	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.0714	FALSE	231	205	14	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	4	4	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	11626	0	0	1	0.0357	0.0357	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.0714	FALSE	231	204	14	283	0	FALSE	ACH-000888
NCIH1793_LUNG	RP5-857K21.11--MTATP6P1	5	0	RP5-857K21.11	1075	chr1:569830:+	MTATP6P1	5225	chr1:569753:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1793_LUNG	1	1	0.0446	TRUE	16	42	4	10	0	FALSE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	4	4	TXNRD1	10020	chr12:104680888:+	RP11-818F20.4	35677	chr12:104565606:+	INCL_NON_REF_SPLICE	YES	312	5	0.03	0.62	0.0357	0.0357	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.03	0.62	0.0714	TRUE	0	0	0	1	0	FALSE	ACH-000888
NCIH1793_LUNG	ZNF486--RFXANK	2	12	ZNF486	3356	chr19:20296891:+	RFXANK	15197	chr19:19307772:+	ONLY_REF_SPLICE	YES	60	162	0.19	0.08	0.0179	0.1071	ZNF486->chr19:20278037-20311299:+,zinc_finger_protein_486,RFXANK->chr19:19303008-19312678:+,regulatory_factor_X_associated_ankyrin_containing_protein	NCIH1793_LUNG	0.08	0.19	0.125	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	MT-ATP6--MT-CO1	4	3	MT-ATP6	1180	chrM:8706:+	MT-CO1	5176	chrM:6398:+	INCL_NON_REF_SPLICE	YES	13479	16302	0	0	0.0357	0.0268	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	0	0	0.0625	FALSE	183	104	9	328	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	4	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11375	57	0	0.11	0.0357	0.0268	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.11	0.0625	FALSE	230	198	14	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	15901	833	0	0.01	0.0268	0.0625	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.01	0.0893	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14843	57	0	0.15	0.0268	0.0625	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.15	0.0893	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND5--MT-CO1	3	7	MT-ND5	2217	chrM:13553:+	MT-CO1	6357	chrM:6448:+	INCL_NON_REF_SPLICE	YES	2381	16550	0	0	0.0268	0.0625	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	0	0	0.0893	FALSE	8	12	2	9	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND5--MT-CO1	3	7	MT-ND5	2523	chrM:13859:+	MT-CO1	6309	chrM:6400:+	INCL_NON_REF_SPLICE	NO	2300	16138	0	0	0.0268	0.0625	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	0	0	0.0893	FALSE	8	12	2	9	0	FALSE	ACH-000888
NCIH1793_LUNG	JSRP1--RPS28	4	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0357	0.0179	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH1793_LUNG	0.86	1	0.0536	TRUE	0	1	0	84	1	FALSE	ACH-000888
NCIH1793_LUNG	MT-ATP6--MT-CO1	3	6	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3610	18566	0	0	0.0268	0.0536	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	0	0	0.0804	FALSE	183	104	9	328	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ATP6--MT-CO1	4	2	MT-ATP6	1121	chrM:8647:+	MT-CO1	4698	chrM:5920:+	INCL_NON_REF_SPLICE	YES	10607	0	0	1	0.0357	0.0179	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	0	1	0.0536	FALSE	182	97	9	327	0	FALSE	ACH-000888
NCIH1793_LUNG	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0.0179	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1793_LUNG	1	1	0.0536	FALSE	515	4851	409	746	0	FALSE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	3	6	TXNRD1	10019	chr12:104680887:+	RP11-818F20.4	35622	chr12:104565551:+	ONLY_REF_SPLICE	YES	303	0	0.03	1	0.0268	0.0536	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.03	1	0.0804	TRUE	0	0	0	1	0	FALSE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	3	6	TXNRD1	10020	chr12:104680888:+	RP11-818F20.4	35617	chr12:104565546:+	INCL_NON_REF_SPLICE	YES	312	0	0.03	1	0.0268	0.0536	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.03	1	0.0804	TRUE	0	0	0	1	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ATP6--MT-CO1	3	5	MT-ATP6	1295	chrM:8821:+	MT-CO1	5307	chrM:6529:+	INCL_NON_REF_SPLICE	NO	17561	16401	0	0	0.0268	0.0446	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	0	0	0.0714	FALSE	183	104	9	328	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND5--MT-CO1	4	1	MT-ND5	1998	chrM:13334:+	MT-CO1	6512	chrM:6603:+	INCL_NON_REF_SPLICE	YES	3663	17968	0	0	0.0357	0.0089	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	0	0	0.0446	FALSE	8	12	2	9	0	FALSE	ACH-000888
NCIH1793_LUNG	RP11-476K15.1--CTD-2015H3.2	4	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.0357	0.0089	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCIH1793_LUNG	0.62	1	0.0446	FALSE	0	46	0	73	0	FALSE	ACH-000888
NCIH1793_LUNG	RP5-857K21.11--MTATP6P1	3	5	RP5-857K21.11	1006	chr1:569761:+	MTATP6P1	4825	chr1:569353:+	INCL_NON_REF_SPLICE	YES	0	77	1	0.09	0.0268	0.0446	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1793_LUNG	0.09	1	0.0714	TRUE	16	42	4	10	0	FALSE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	2	9	TXNRD1	10256	chr12:104681124:+	RP11-818F20.4	35622	chr12:104565551:+	ONLY_REF_SPLICE	YES	727	0	0.01	1	0.0179	0.0804	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.01	1	0.0983	FALSE	0	0	0	1	0	FALSE	ACH-000888
NCIH1793_LUNG	CPSF6--CHMP1A	4	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH1793_LUNG	1	1	0.0357	TRUE	95	74	6	34	0	FALSE	ACH-000888
NCIH1793_LUNG	FTH1--ACTB	4	0	FTH1	1181	chr11:61734952:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH1793_LUNG	1	1	0.0357	TRUE	1	0	0	97	0	FALSE	ACH-000888
NCIH1793_LUNG	HMOX1--MT-ND4L	4	0	HMOX1	7061	chr22:35789509:+	MT-ND4L	10915	chrM:10625:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	HMOX1->chr22:35776354-35790207:+,heme_oxygenase_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	1	1	0.0357	FALSE	0	0	0	4	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1164	chrM:10923:+	MT-ATP8	5389	chrM:8376:+	INCL_NON_REF_SPLICE	YES	9078	0	0	1	0.0268	0.0357	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.0625	FALSE	230	193	14	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1110	chrM:10869:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	6775	0	0	1	0.0268	0.0357	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	1	0.0625	FALSE	230	193	14	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	13407	1958	0	0	0.0268	0.0357	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0	0.0625	FALSE	231	217	16	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	3	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0.0357	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	1	1	0.0625	FALSE	344	821	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1793_LUNG	1	1	0.0357	FALSE	499	1288	110	792	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1793_LUNG	1	1	0.0357	FALSE	499	1288	110	792	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	11176	7	0	0.46	0.0268	0.0268	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0.46	0.0536	FALSE	230	193	14	283	0	FALSE	ACH-000888
NCIH1793_LUNG	FTH1--ACTB	3	2	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	9045	8	0	0.38	0.0268	0.0179	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH1793_LUNG	0	0.38	0.0447	FALSE	1	0	0	97	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	12063	16505	0	0	0.0268	0.0179	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	0	0	0.0447	FALSE	183	104	9	328	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	14759	1625	0	0	0.0268	0.0179	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	0	0	0.0447	FALSE	231	205	14	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND5--MT-CO1	3	2	MT-ND5	2662	chrM:13998:+	MT-CO1	7031	chrM:7122:+	INCL_NON_REF_SPLICE	YES	1440	17225	0	0	0.0268	0.0179	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	0	0	0.0447	FALSE	8	12	2	9	0	FALSE	ACH-000888
NCIH1793_LUNG	PARPBP--TXNRD1	3	2	PARPBP	12645	chr12:102559661:+	TXNRD1	24498	chr12:104645305:+	ONLY_REF_SPLICE	YES	11	0	0.31	1	0.0268	0.0179	PARPBP->PARP1_binding_protein,chr12:102513956-102591298:+,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	NCIH1793_LUNG	0.31	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	RP5-857K21.11--MTATP6P1	3	2	RP5-857K21.11	1105	chr1:569860:+	MTATP6P1	5191	chr1:569719:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0.0179	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1793_LUNG	1	1	0.0447	TRUE	16	42	4	10	0	FALSE	ACH-000888
NCIH1793_LUNG	FTH1--ACTB	3	1	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	7772	7	0	0.36	0.0268	0.0089	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH1793_LUNG	0	0.36	0.0357	FALSE	1	0	0	97	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	10584	16000	0	0	0.0268	0.0089	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	0	0	0.0357	FALSE	183	104	9	328	0	FALSE	ACH-000888
NCIH1793_LUNG	RP5-857K21.11--MTATP6P1	3	1	RP5-857K21.11	1146	chr1:569901:+	MTATP6P1	5219	chr1:569747:+	INCL_NON_REF_SPLICE	YES	5	0	0.44	1	0.0268	0.0089	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1793_LUNG	0.44	1	0.0357	TRUE	16	42	4	10	0	FALSE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	1	9	TXNRD1	10260	chr12:104681128:+	RP11-818F20.4	35622	chr12:104565551:+	ONLY_REF_SPLICE	YES	822	0	0.01	1	0.0089	0.0804	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.01	1	0.0893	FALSE	0	0	0	1	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1179	chrM:8705:+	MT-CO1	5377	chrM:6599:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	1	1	0.0268	FALSE	183	104	9	328	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	1	1	0.0268	FALSE	183	104	9	328	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5571	chrM:8558:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1793_LUNG	1	1	0.0268	FALSE	231	204	14	283	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	1	1	0.0268	FALSE	344	821	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1056	chrM:10815:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	1	1	0.0268	FALSE	344	821	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1793_LUNG	1	1	0.0268	FALSE	344	821	44	306	0	FALSE	ACH-000888
NCIH1793_LUNG	MT-ND5--MT-CO1	3	0	MT-ND5	1324	chrM:12660:+	MT-CO1	6340	chrM:6431:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1793_LUNG	1	1	0.0268	FALSE	2	7	1	6	0	FALSE	ACH-000888
NCIH1793_LUNG	TIMM23B--LINC00843	3	0	TIMM23B	1257	chr10:51371646:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1793_LUNG	1	1	0.0268	TRUE	0	0	0	10	0	FALSE	ACH-000888
NCIH1793_LUNG	NRIP1--AF127936.7	2	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.45	1	0.0179	0.0268	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1793_LUNG	0.45	1	0.0447	FALSE	125	705	46	456	0	FALSE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	2	3	TXNRD1	4414	chr12:104651857:+	RP11-818F20.4	35622	chr12:104565551:+	ONLY_REF_SPLICE	YES	559	0	0.01	1	0.0179	0.0268	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.01	1	0.0447	FALSE	0	0	0	1	0	FALSE	ACH-000888
NCIH1793_LUNG	PARPBP--TXNRD1	2	2	PARPBP	15008	chr12:102572548:+	TXNRD1	24498	chr12:104645305:+	ONLY_REF_SPLICE	YES	13	0	0.24	1	0.0179	0.0179	PARPBP->PARP1_binding_protein,chr12:102513956-102591298:+,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	NCIH1793_LUNG	0.24	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0179	0.0179	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1793_LUNG	1	1	0.0358	FALSE	467	2173	244	435	0	FALSE	ACH-000888
NCIH1793_LUNG	ADAMTS20--SSPN	2	1	ADAMTS20	20576	chr12:43826107:-	SSPN	52773	chr12:26440416:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0179	0.0089	ADAMTS20->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_20,chr12:43747669-43945724:-,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	NCIH1793_LUNG	0.75	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0.0089	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1793_LUNG	1	1	0.0268	TRUE	477	1352	189	275	0	FALSE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	2	1	TXNRD1	3353	chr12:104645456:+	RP11-818F20.4	35622	chr12:104565551:+	ONLY_REF_SPLICE	YES	528	0	0.01	1	0.0179	0.0089	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.01	1	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	1	5	TXNRD1	28669	chr12:104739933:+	RP11-818F20.4	36886	chr12:104571295:+	ONLY_REF_SPLICE	YES	1592	24	0	0.2	0.0089	0.0446	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0	0.2	0.0535	FALSE	0	0	0	1	0	FALSE	ACH-000888
NCIH1793_LUNG	AP2S1--GTF2IRD1	2	0	AP2S1	3015	chr19:47349250:-	GTF2IRD1	32219	chr7:73973191:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	AP2S1->adaptor_related_protein_complex_2_sigma_1_subunit,chr19:47341393-47354249:-,GTF2IRD1->GTF2I_repeat_domain_containing_1,chr7:73868120-74016931:+	NCIH1793_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	ARPC1B--CEBPZ	2	0	ARPC1B	1533	chr7:98972404:+	CEBPZ	28347	chr2:37439182:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,CEBPZ->CCAAT/enhancer_binding_protein_zeta,chr2:37428755-37458856:-	NCIH1793_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	NOVA1--NUP133	2	0	NOVA1	11457	chr14:26941526:-	NUP133	29140	chr1:229634053:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	NOVA1->NOVA_alternative_splicing_regulator_1,chr14:26912299-27066960:-,NUP133->Oncogene{Bushman},chr1:229577045-229644103:-,nucleoporin_133kDa	NCIH1793_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	NUFIP2--DLG1	2	0	NUFIP2	1336	chr17:27620801:-	DLG1	19916	chr3:197024106:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2,DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component	NCIH1793_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000888
NCIH1793_LUNG	CHRNB1--TXNDC17	1	3	CHRNB1	3590	chr17:7350969:+	TXNDC17	13135	chr17:6545073:+	ONLY_REF_SPLICE	NO	15	486	0.21	0.01	0.0089	0.0268	CHRNB1->cholinergic_receptor_nicotinic_beta_1_subunit,chr17:7348380-7361026:+,TXNDC17->chr17:6544078-6547861:+,thioredoxin_domain_containing_17	NCIH1793_LUNG	0.01	0.21	0.0357	FALSE	0	0	0	1	0	FALSE	ACH-000888
NCIH1793_LUNG	RP11-6N13.1--CTD-2374C24.1	1	3	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0089	0.0268	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH1793_LUNG	1	1	0.0357	TRUE	5	12	0	42	0	FALSE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	1	3	TXNRD1	6780	chr12:104676754:+	RP11-818F20.4	35622	chr12:104565551:+	ONLY_REF_SPLICE	YES	239	0	0.02	1	0.0089	0.0268	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.02	1	0.0357	TRUE	0	0	0	1	0	FALSE	ACH-000888
NCIH1793_LUNG	TXNRD1--RP11-818F20.4	1	3	TXNRD1	5685	chr12:104670464:+	RP11-818F20.4	35622	chr12:104565551:+	ONLY_REF_SPLICE	YES	228	0	0.02	1	0.0089	0.0268	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1793_LUNG	0.02	1	0.0357	TRUE	0	0	0	1	0	FALSE	ACH-000888
NCIH1793_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0089	0.0179	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1793_LUNG	1	1	0.0268	FALSE	192	492	57	212	0	FALSE	ACH-000888
NCIH1793_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0089	0.0179	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1793_LUNG	1	1	0.0268	FALSE	407	2205	196	549	0	FALSE	ACH-000888
NCIH1793_LUNG	FTH1--SPTBN1	1	1	FTH1	1349	chr11:61734784:-	SPTBN1	51881	chr2:54891590:+	ONLY_REF_SPLICE	YES	14028	451	0	0	0.0089	0.0089	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1	NCIH1793_LUNG	0	0	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000888
NCIH1793_LUNG	ING3--CHMP1A	1	1	ING3	3654	chr7:120595678:+	CHMP1A	23185	chr16:89713739:-	ONLY_REF_SPLICE	YES	22	150	0.08	0.01	0.0089	0.0089	GTEx_FI:{Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Whole_Blood=1,=1},{Klijn_CCL:Lung=2,Brain=1},ING3->Oncogene{Bushman},chr7:120590803-120617270:+,inhibitor_of_growth_family_member_3,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH1793_LUNG	0.01	0.08	0.0178	FALSE	4	4	0	1	0	FALSE	ACH-000888
NCIH1793_LUNG	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	10	3	0.17	0.4	0.0089	0.0089	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1793_LUNG	0.17	0.4	0.0178	FALSE	8	57	1	47	0	FALSE	ACH-000888
NCIH1793_LUNG	SYTL4--PLS3	1	1	SYTL4	1120	chrX:99986991:-	PLS3	24297	chrX:114844555:+	ONLY_REF_SPLICE	YES	7	3	0.22	0.4	0.0089	0.0089	SYTL4->chrX:99929488-99987110:-,synaptotagmin_like_4,PLS3->chrX:114795501-114885181:+,plastin_3	NCIH1793_LUNG	0.22	0.4	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000888
CAPAN1_PANCREAS	KANSL1--ARL17B	214	105	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	22	30	0.94	0.91	2.2839	1.1206	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	CAPAN1_PANCREAS	0.91	0.94	3.4045	TRUE	181	1564	124	196	0	FALSE	ACH-000354
CAPAN1_PANCREAS	TIMM23B--LINC00843	120	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.2807	0.2455	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAPAN1_PANCREAS	0.99	1	1.5262	TRUE	508	994	45	981	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-ND6--MT-TE	85	9	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9072	0.0961	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN1_PANCREAS	1	1	1.0033	FALSE	499	1288	110	792	0	FALSE	ACH-000354
CAPAN1_PANCREAS	TIMM23--RP11-464F9.1	66	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	192	4	0.26	0.94	0.7044	0.0107	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAPAN1_PANCREAS	0.26	0.94	0.7151	TRUE	519	3926	326	965	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-TA--MT-TC	51	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5443	0.032	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAPAN1_PANCREAS	1	1	0.5763	FALSE	462	80	0	856	0	FALSE	ACH-000354
CAPAN1_PANCREAS	LAMA3--RP11-26N15.2	39	7	LAMA3	13844	chr18:21364121:+	RP11-26N15.2	84144	chr18:24924185:+	ONLY_REF_SPLICE	YES	5	0	0.9	1	0.4162	0.0747	LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,RP11-26N15.2->chr18:24923216-24926074:+	CAPAN1_PANCREAS	0.9	1	0.4909	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	ZNF654--HMGB2	40	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4269	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CAPAN1_PANCREAS	1	1	0.4269	TRUE	0	0	0	518	0	FALSE	ACH-000354
CAPAN1_PANCREAS	ZC3H13--FAM96A	33	23	ZC3H13	4502	chr13:46616299:-	FAM96A	35678	chr15:64373350:-	ONLY_REF_SPLICE	YES	10	220	0.85	0.2	0.3522	0.2455	{Klijn_CCL:Pancreas=1},ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13,FAM96A->chr15:64364758-64386217:-,family_with_sequence_similarity_96_member_A	CAPAN1_PANCREAS	0.2	0.85	0.5977	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	26	44	MT-CO3	1153	chrM:9359:+	MT-ATP6	4940	chrM:8682:+	INCL_NON_REF_SPLICE	YES	7	10	0.91	0.88	0.2775	0.4696	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	0.88	0.91	0.7471	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-ND6--MT-TE	25	18	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.2668	0.1921	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN1_PANCREAS	0.96	1	0.4589	FALSE	499	1288	110	792	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-ND6--MT-TE	24	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2561	0.0854	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN1_PANCREAS	1	1	0.3415	FALSE	499	1288	110	792	0	FALSE	ACH-000354
CAPAN1_PANCREAS	IGF1R--LRRC28	23	8	IGF1R	3251	chr15:99251336:+	LRRC28	55309	chr15:99874128:+	ONLY_REF_SPLICE	YES	9	11	0.78	0.74	0.2455	0.0854	GTEx&tcga_normals:1/3694=0.03%,IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor,LRRC28->chr15:99791567-99930934:+,leucine_rich_repeat_containing_28	CAPAN1_PANCREAS	0.74	0.78	0.3309	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	ZC3H13--FAM96A	19	14	ZC3H13	4502	chr13:46616299:-	FAM96A	36728	chr15:64367736:-	ONLY_REF_SPLICE	YES	10	203	0.77	0.14	0.2028	0.1494	{Klijn_CCL:Pancreas=1},ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13,FAM96A->chr15:64364758-64386217:-,family_with_sequence_similarity_96_member_A	CAPAN1_PANCREAS	0.14	0.77	0.3522	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	IGF1R--LRRC28	19	3	IGF1R	3251	chr15:99251336:+	LRRC28	56517	chr15:99892574:+	ONLY_REF_SPLICE	YES	9	17	0.71	0.56	0.2028	0.032	GTEx&tcga_normals:1/3694=0.03%,IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor,LRRC28->chr15:99791567-99930934:+,leucine_rich_repeat_containing_28	CAPAN1_PANCREAS	0.56	0.71	0.2348	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	NIPA2--POLA1	19	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2028	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	CAPAN1_PANCREAS	1	1	0.2028	TRUE	46	1352	75	139	0	FALSE	ACH-000354
CAPAN1_PANCREAS	AKAP8--SPIRE1	17	7	AKAP8	9441	chr19:15479046:-	SPIRE1	26024	chr18:12546903:-	ONLY_REF_SPLICE	YES	42	5	0.36	0.83	0.1814	0.0747	AKAP8->A-kinase_anchoring_protein_8,chr19:15464196-15490609:-,SPIRE1->chr18:12446511-12658133:-,spire_type_actin_nucleation_factor_1	CAPAN1_PANCREAS	0.36	0.83	0.2561	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	NRIP1--AF127936.7	18	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.87	1	0.1921	0.0213	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAPAN1_PANCREAS	0.87	1	0.2134	FALSE	292	1546	117	613	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	3	59	MT-CO3	1378	chrM:9584:+	MT-ATP6	4916	chrM:8658:+	INCL_NON_REF_SPLICE	YES	8	6	0.89	0.91	0.032	0.6297	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	0.89	0.91	0.6617	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	HELLS--ZKSCAN5	15	9	HELLS	12193	chr10:96336562:+	ZKSCAN5	36717	chr7:99110076:+	ONLY_REF_SPLICE	YES	10	18	0.71	0.57	0.1601	0.0961	HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific,ZKSCAN5->chr7:99102274-99132323:+,zinc_finger_with_KRAB_and_SCAN_domains_5	CAPAN1_PANCREAS	0.57	0.71	0.2562	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	UBP1--RP11-423O2.7	16	2	UBP1	2636	chr3:33481228:-	RP11-423O2.7	26274	chr1:142952672:-	ONLY_REF_SPLICE	YES	31	0	0.37	1	0.1708	0.0213	UBP1->chr3:33429828-33482863:-,upstream_binding_protein_1_(LBP-1a),RP11-423O2.7->chr1:142950985-142956716:-	CAPAN1_PANCREAS	0.37	1	0.1921	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	PSMD1--SPATA3	15	5	PSMD1	21281	chr2:232018380:+	SPATA3	33970	chr2:231865081:+	ONLY_REF_SPLICE	YES	174	0	0.1	1	0.1601	0.0534	LOCAL_REARRANGEMENT:+:[31808],PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1,SPATA3->chr2:231860836-231889770:+,spermatogenesis_associated_3	CAPAN1_PANCREAS	0.1	1	0.2135	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	5	44	MT-CO3	1220	chrM:9426:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	10	0.91	0.83	0.0534	0.4696	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	0.83	0.91	0.523	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	5	44	MT-CO3	1153	chrM:9359:+	MT-ATP6	4939	chrM:8681:+	INCL_NON_REF_SPLICE	YES	7	10	0.88	0.83	0.0534	0.4696	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	0.83	0.88	0.523	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	RP11-114H23.1--RP11-114H23.2	15	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1601	0.032	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CAPAN1_PANCREAS	1	1	0.1921	FALSE	81	155	12	160	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	5	40	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	5	0.98	0.9	0.0534	0.4269	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	0.9	0.98	0.4803	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	3	44	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	7	11	0.87	0.81	0.032	0.4696	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	0.81	0.87	0.5016	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	3	44	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	5	46	0.9	0.51	0.032	0.4696	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	0.51	0.9	0.5016	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-ND6--MT-TE	6	29	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.064	0.3095	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN1_PANCREAS	0.95	1	0.3735	FALSE	499	1288	110	792	0	FALSE	ACH-000354
CAPAN1_PANCREAS	PRKCE--SNX17	12	5	PRKCE	2104	chr2:45879587:+	SNX17	42975	chr2:27594136:+	ONLY_REF_SPLICE	YES	6	224	0.74	0.07	0.1281	0.0534	{Klijn_CCL:Pancreas=1},PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,SNX17->chr2:27593389-27599995:+,sorting_nexin_17	CAPAN1_PANCREAS	0.07	0.74	0.1815	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	6	28	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	1	1	0.97	0.97	0.064	0.2988	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	0.97	0.97	0.3628	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	ZKSCAN5--HELLS	12	4	ZKSCAN5	2808	chr7:99104081:+	HELLS	30466	chr10:96347986:+	ONLY_REF_SPLICE	YES	16	22	0.5	0.42	0.1281	0.0427	{Klijn_CCL:Pancreas=1},ZKSCAN5->chr7:99102274-99132323:+,zinc_finger_with_KRAB_and_SCAN_domains_5,HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific	CAPAN1_PANCREAS	0.42	0.5	0.1708	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	3	39	MT-CO3	1083	chrM:9289:+	MT-ATP6	5222	chrM:8964:+	INCL_NON_REF_SPLICE	YES	1	14	0.98	0.75	0.032	0.4162	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	0.75	0.98	0.4482	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-TA--MT-TC	12	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1281	0.032	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAPAN1_PANCREAS	1	1	0.1601	FALSE	462	80	0	856	0	FALSE	ACH-000354
CAPAN1_PANCREAS	RP11-123O10.4--GRIP1	12	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1281	0.0107	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAPAN1_PANCREAS	1	1	0.1388	FALSE	416	2512	207	587	0	FALSE	ACH-000354
CAPAN1_PANCREAS	ZKSCAN5--HELLS	11	5	ZKSCAN5	2808	chr7:99104081:+	HELLS	27106	chr10:96341083:+	ONLY_REF_SPLICE	YES	16	13	0.5	0.55	0.1174	0.0534	{Klijn_CCL:Pancreas=1},ZKSCAN5->chr7:99102274-99132323:+,zinc_finger_with_KRAB_and_SCAN_domains_5,HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific	CAPAN1_PANCREAS	0.5	0.55	0.1708	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	MT-ND6--MT-TE	5	20	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0.2134	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN1_PANCREAS	1	1	0.2668	FALSE	499	1288	110	792	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	4	23	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	1	5	0.96	0.84	0.0427	0.2455	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	0.84	0.96	0.2882	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	ZFAND4--MEGF11	9	3	ZFAND4	2832	chr10:46158990:-	MEGF11	23076	chr15:66420749:-	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.0961	0.032	ZFAND4->chr10:46111043-46168228:-,zinc_finger_AN1-type_containing_4,MEGF11->chr15:66187417-66546085:-,multiple_EGF_like_domains_11	CAPAN1_PANCREAS	0.75	1	0.1281	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	CCAT1--CASC8	7	5	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	17	0	0.41	1	0.0747	0.0534	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	CAPAN1_PANCREAS	0.41	1	0.1281	TRUE	0	7	0	14	6	TRUE	ACH-000354
CAPAN1_PANCREAS	MT-TA--MT-TC	7	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0.032	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAPAN1_PANCREAS	1	1	0.1067	FALSE	462	80	0	856	0	FALSE	ACH-000354
CAPAN1_PANCREAS	NRIP1--AF127936.7	7	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.71	1	0.0747	0.032	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAPAN1_PANCREAS	0.71	1	0.1067	FALSE	125	705	46	456	0	FALSE	ACH-000354
CAPAN1_PANCREAS	HELLS--ZKSCAN5	6	6	HELLS	12097	chr10:96336466:+	ZKSCAN5	36717	chr7:99110076:+	ONLY_REF_SPLICE	YES	16	18	0.43	0.4	0.064	0.064	HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific,ZKSCAN5->chr7:99102274-99132323:+,zinc_finger_with_KRAB_and_SCAN_domains_5	CAPAN1_PANCREAS	0.4	0.43	0.128	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	KANSL1--ARL17B	3	18	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	38	30	0.36	0.41	0.032	0.1921	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	CAPAN1_PANCREAS	0.36	0.41	0.2241	TRUE	105	90	7	93	0	FALSE	ACH-000354
CAPAN1_PANCREAS	NRIP1--AF127936.7	6	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.44	1	0.064	0.064	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAPAN1_PANCREAS	0.44	1	0.128	FALSE	164	806	69	479	0	FALSE	ACH-000354
CAPAN1_PANCREAS	RP11-680G10.1--GSE1	7	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	32	1	0.22	0.0747	0.0213	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAPAN1_PANCREAS	0.22	1	0.096	TRUE	465	1949	224	605	0	FALSE	ACH-000354
CAPAN1_PANCREAS	SIN3A--IL21	7	1	SIN3A	28470	chr15:75681993:-	IL21	40858	chr4:123541891:-	ONLY_REF_SPLICE	YES	56	2	0.12	0.8	0.0747	0.0107	SIN3A->SIN3_transcription_regulator_family_member_A,chr15:75661720-75748183:-,IL21->chr4:123533783-123542224:-,interleukin_21	CAPAN1_PANCREAS	0.12	0.8	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	RP11-96H19.1--RP11-446N19.1	7	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0747	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAPAN1_PANCREAS	1	1	0.0747	FALSE	515	4851	409	746	0	FALSE	ACH-000354
CAPAN1_PANCREAS	ZNF654--HMGB2	7	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CAPAN1_PANCREAS	1	1	0.0747	TRUE	0	0	0	518	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-ND6--MT-TE	3	11	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	3	0	0.82	1	0.032	0.1174	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN1_PANCREAS	0.82	1	0.1494	FALSE	499	1288	110	792	0	FALSE	ACH-000354
CAPAN1_PANCREAS	RP11-114H23.1--RP11-114H23.2	5	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0.032	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CAPAN1_PANCREAS	1	1	0.0854	FALSE	81	155	12	160	0	FALSE	ACH-000354
CAPAN1_PANCREAS	CEP350--RP11-138E16.1	5	1	CEP350	32050	chr1:180034407:+	RP11-138E16.1	56661	chr15:49238149:+	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0534	0.0107	CEP350->centrosomal_protein_350,chr1:179923873-180084015:+,RP11-138E16.1->chr15:49230433-49240228:+	CAPAN1_PANCREAS	0.86	0.86	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	LAMA3--RP11-612A1.1	5	1	LAMA3	13844	chr18:21364121:+	RP11-612A1.1	84209	chr18:24981464:+	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0534	0.0107	LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,RP11-612A1.1->chr18:24977916-24981868:+	CAPAN1_PANCREAS	0.55	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	5	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	1	1	0.0534	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	5	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	1	1	0.0534	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	3	7	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	5	1	0.67	0.91	0.032	0.0747	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	0.67	0.91	0.1067	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	CCAT1--CASC8	4	2	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	17	1	0.26	0.86	0.0427	0.0213	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	CAPAN1_PANCREAS	0.26	0.86	0.064	TRUE	0	26	0	18	24	TRUE	ACH-000354
CAPAN1_PANCREAS	MT-ND6--MT-TE	4	1	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0.0107	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN1_PANCREAS	1	1	0.0534	FALSE	499	1288	110	792	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN1_PANCREAS	1	1	0.0427	FALSE	499	1288	110	792	0	FALSE	ACH-000354
CAPAN1_PANCREAS	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CAPAN1_PANCREAS	1	1	0.0427	TRUE	22	156	2	142	0	FALSE	ACH-000354
CAPAN1_PANCREAS	KANSL1--ARL17B	1	11	KANSL1	9741	chr17:44171926:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	NO	22	13	0.35	0.48	0.0107	0.1174	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	CAPAN1_PANCREAS	0.35	0.48	0.1281	TRUE	51	25	1	17	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.032	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAPAN1_PANCREAS	1	1	0.064	FALSE	462	80	0	856	0	FALSE	ACH-000354
CAPAN1_PANCREAS	DEPTOR--GDPD1	3	2	DEPTOR	4734	chr8:120977650:+	GDPD1	16908	chr17:57311853:+	ONLY_REF_SPLICE	YES	2	4	0.71	0.56	0.032	0.0213	DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+,GDPD1->chr17:57297828-57353328:+,glycerophosphodiester_phosphodiesterase_domain_containing_1	CAPAN1_PANCREAS	0.56	0.71	0.0533	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	HIF1A--PRKCH	3	2	HIF1A	8333	chr14:62194373:+	PRKCH	58430	chr14:62014461:+	ONLY_REF_SPLICE	YES	121	38	0.04	0.12	0.032	0.0213	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	CAPAN1_PANCREAS	0.04	0.12	0.0533	TRUE	0	0	0	1	0	FALSE	ACH-000354
CAPAN1_PANCREAS	AKAP1--TBC1D31	3	1	AKAP1	19924	chr17:55198671:+	TBC1D31	47987	chr8:124153001:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.31	0.032	0.0107	AKAP1->A-kinase_anchoring_protein_1,chr17:55162453-55198710:+,TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+	CAPAN1_PANCREAS	0.31	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	3	1	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	6	1	0.4	0.8	0.032	0.0107	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	0.4	0.8	0.0427	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-ND6--MT-TE	3	1	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.0107	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN1_PANCREAS	1	1	0.0427	FALSE	499	1288	110	792	0	FALSE	ACH-000354
CAPAN1_PANCREAS	PSMD1--SPATA3	3	1	PSMD1	21281	chr2:232018380:+	SPATA3	35142	chr2:231867399:+	ONLY_REF_SPLICE	YES	174	3	0.02	0.57	0.032	0.0107	LOCAL_REARRANGEMENT:+:[31808],PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1,SPATA3->chr2:231860836-231889770:+,spermatogenesis_associated_3	CAPAN1_PANCREAS	0.02	0.57	0.0427	TRUE	0	0	0	1	0	FALSE	ACH-000354
CAPAN1_PANCREAS	RP11-114H23.1--RP11-114H23.2	3	1	RP11-114H23.1	1242	chr12:76377554:-	RP11-114H23.2	12403	chr12:76088755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.0107	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CAPAN1_PANCREAS	1	1	0.0427	FALSE	81	155	12	160	0	FALSE	ACH-000354
CAPAN1_PANCREAS	ZFAND4--MEGF11	3	1	ZFAND4	2832	chr10:46158990:-	MEGF11	25284	chr15:66411524:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.032	0.0107	ZFAND4->chr10:46111043-46168228:-,zinc_finger_AN1-type_containing_4,MEGF11->chr15:66187417-66546085:-,multiple_EGF_like_domains_11	CAPAN1_PANCREAS	0.5	1	0.0427	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	1	1	0.032	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	3	0	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	1	1	0.032	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	1	1	0.032	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-CO3--MT-ATP6	3	0	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN1_PANCREAS	1	1	0.032	FALSE	189	492	56	216	0	FALSE	ACH-000354
CAPAN1_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN1_PANCREAS	1	1	0.032	FALSE	499	1288	110	792	0	FALSE	ACH-000354
CAPAN1_PANCREAS	RP11-96H19.1--RP11-446N19.1	3	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAPAN1_PANCREAS	1	1	0.032	FALSE	407	2205	196	549	0	FALSE	ACH-000354
CAPAN1_PANCREAS	PRKCE--SNX17	2	2	PRKCE	2104	chr2:45879587:+	SNX17	44329	chr2:27595490:+	ONLY_REF_SPLICE	NO	6	155	0.4	0.03	0.0213	0.0213	{Klijn_CCL:Pancreas=1},PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,SNX17->chr2:27593389-27599995:+,sorting_nexin_17	CAPAN1_PANCREAS	0.03	0.4	0.0426	TRUE	0	0	0	1	0	FALSE	ACH-000354
CAPAN1_PANCREAS	RP11-680G10.1--GSE1	2	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	13	1	0.24	0.0213	0.0213	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAPAN1_PANCREAS	0.24	1	0.0426	TRUE	458	1351	185	561	0	FALSE	ACH-000354
CAPAN1_PANCREAS	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	15	6	0.17	0.33	0.0213	0.0107	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAPAN1_PANCREAS	0.17	0.33	0.032	FALSE	8	57	1	47	0	FALSE	ACH-000354
CAPAN1_PANCREAS	AKAP1--TBC1D31	2	0	AKAP1	17863	chr17:55196405:+	TBC1D31	46894	chr8:124146354:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	AKAP1->A-kinase_anchoring_protein_1,chr17:55162453-55198710:+,TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+	CAPAN1_PANCREAS	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	GUK1--LIN9	2	0	GUK1	1402	chr1:228328064:+	LIN9	24342	chr1:226426797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GUK1->chr1:228327663-228336685:+,guanylate_kinase_1,LIN9->chr1:226418850-226497570:-,lin-9_DREAM_MuvB_core_complex_component	CAPAN1_PANCREAS	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	PVT1--MYC	2	0	PVT1	1202	chr8:128806980:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CAPAN1_PANCREAS	1	1	0.0213	TRUE	3	14	0	24	0	FALSE	ACH-000354
CAPAN1_PANCREAS	RP11-255B23.4--CASC8	2	0	RP11-255B23.4	1060	chr8:128215408:-	CASC8	13502	chr8:128335399:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	CAPAN1_PANCREAS	1	1	0.0213	TRUE	0	0	0	3	0	TRUE	ACH-000354
CAPAN1_PANCREAS	SLC25A44--VPS72	2	0	SLC25A44	1159	chr1:156164038:+	VPS72	16365	chr1:151158426:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,VPS72->chr1:151142463-151167797:-,vacuolar_protein_sorting_72_homolog	CAPAN1_PANCREAS	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	ZC3H13--FAM96A	2	0	ZC3H13	1062	chr13:46626833:-	FAM96A	35678	chr15:64373350:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	{Klijn_CCL:Pancreas=1},ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13,FAM96A->chr15:64364758-64386217:-,family_with_sequence_similarity_96_member_A	CAPAN1_PANCREAS	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	ZKSCAN5--HELLS	1	4	ZKSCAN5	2808	chr7:99104081:+	HELLS	28303	chr10:96342720:+	ONLY_REF_SPLICE	YES	16	16	0.24	0.24	0.0107	0.0427	{Klijn_CCL:Pancreas=1},ZKSCAN5->chr7:99102274-99132323:+,zinc_finger_with_KRAB_and_SCAN_domains_5,HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific	CAPAN1_PANCREAS	0.24	0.24	0.0534	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	KANSL1--ARL17B	1	3	KANSL1	7536	chr17:44248221:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	NO	38	13	0.1	0.24	0.0107	0.032	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	CAPAN1_PANCREAS	0.1	0.24	0.0427	TRUE	16	5	0	9	0	FALSE	ACH-000354
CAPAN1_PANCREAS	RP11-114H23.1--RP11-114H23.2	1	3	RP11-114H23.1	3580	chr12:76085885:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0107	0.032	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CAPAN1_PANCREAS	1	1	0.0427	FALSE	0	0	0	4	0	FALSE	ACH-000354
CAPAN1_PANCREAS	RP11-114H23.1--RP11-114H23.2	1	3	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0107	0.032	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CAPAN1_PANCREAS	1	1	0.0427	FALSE	5	9	0	20	0	FALSE	ACH-000354
CAPAN1_PANCREAS	CEP350--RP11-138E16.1	1	2	CEP350	32050	chr1:180034407:+	RP11-138E16.1	55524	chr15:49230433:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0107	0.0213	CEP350->centrosomal_protein_350,chr1:179923873-180084015:+,RP11-138E16.1->chr15:49230433-49240228:+	CAPAN1_PANCREAS	0.75	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	IGF1R--LRRC28	1	2	IGF1R	3251	chr15:99251336:+	LRRC28	65400	chr15:99926235:+	ONLY_REF_SPLICE	NO	9	9	0.25	0.25	0.0107	0.0213	GTEx&tcga_normals:1/3694=0.03%,IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor,LRRC28->chr15:99791567-99930934:+,leucine_rich_repeat_containing_28	CAPAN1_PANCREAS	0.25	0.25	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000354
CAPAN1_PANCREAS	PSMD1--SPATA3	1	2	PSMD1	20083	chr2:232011070:+	SPATA3	33970	chr2:231865081:+	ONLY_REF_SPLICE	NO	174	0	0.02	1	0.0107	0.0213	LOCAL_REARRANGEMENT:+:[31808],PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1,SPATA3->chr2:231860836-231889770:+,spermatogenesis_associated_3	CAPAN1_PANCREAS	0.02	1	0.032	TRUE	0	0	0	1	0	FALSE	ACH-000354
CAPAN1_PANCREAS	HIF1A--PRKCH	1	1	HIF1A	7496	chr14:62193536:+	PRKCH	58430	chr14:62014461:+	ONLY_REF_SPLICE	YES	134	38	0.01	0.05	0.0107	0.0107	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	CAPAN1_PANCREAS	0.01	0.05	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000354
CAPAN1_PANCREAS	PRKCE--SNX17	1	1	PRKCE	10398	chr2:45928663:+	SNX17	47212	chr2:27598373:+	ONLY_REF_SPLICE	NO	6	142	0.25	0.01	0.0107	0.0107	{Klijn_CCL:Pancreas=1},PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,SNX17->chr2:27593389-27599995:+,sorting_nexin_17	CAPAN1_PANCREAS	0.01	0.25	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000354
CAPAN1_PANCREAS	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0107	0.0107	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CAPAN1_PANCREAS	1	1	0.0214	FALSE	81	155	12	160	0	FALSE	ACH-000354
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	141	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.8415	0.431	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.2725	TRUE	508	994	45	981	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	92	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	194	6	0.33	0.94	1.2016	0.0392	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.94	1.2408	TRUE	519	3926	326	965	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	70	31	KMT2A	16644	chr11:118353210:+	AFF1	62543	chr4:88005272:+	ONLY_REF_SPLICE	YES	10	65	0.91	0.61	0.9142	0.4049	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.91	1.3191	TRUE	0	0	0	2	0	TRUE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	71	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9273	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9273	TRUE	0	0	0	518	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AFF1--KMT2A	32	19	AFF1	8490	chr4:87968746:+	KMT2A	52489	chr11:118355577:+	ONLY_REF_SPLICE	YES	57	16	0.47	0.76	0.4179	0.2481	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.76	0.666	TRUE	0	0	0	2	0	TRUE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	31	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4049	0.0522	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4571	FALSE	416	2512	207	587	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	24	0	PTMA	6054	chr2:232576687:+	ANP32B	17703	chr9:100773556:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3134	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3134	TRUE	0	0	0	4	0	TRUE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AFF1--KMT2A	21	9	AFF1	8490	chr4:87968746:+	KMT2A	53603	chr11:118359329:+	ONLY_REF_SPLICE	YES	57	8	0.34	0.79	0.2743	0.1175	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.79	0.3918	TRUE	0	0	0	1	0	TRUE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBA1B--PTMA	23	1	TUBA1B	4414	chr12:49521767:-	PTMA	13136	chr2:232577153:+	INCL_NON_REF_SPLICE	YES	1994	6662	0.01	0	0.3004	0.0131	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.3135	TRUE	0	0	0	4	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	22	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2873	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2873	FALSE	462	80	0	856	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	12	30	KMT2A	16644	chr11:118353210:+	AFF1	62546	chr4:88005275:+	ONLY_REF_SPLICE	YES	10	64	0.81	0.4	0.1567	0.3918	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.81	0.5485	TRUE	0	0	0	2	0	TRUE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	15	3	PTMA	6593	chr2:232577226:+	ANP32B	17795	chr9:100773648:+	INCL_NON_REF_SPLICE	YES	6664	1029	0	0.02	0.1959	0.0392	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.2351	TRUE	0	0	0	4	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBA1B--PTMA	13	2	TUBA1B	4124	chr12:49522057:-	PTMA	9248	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	6713	11	0	0.58	0.1698	0.0261	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.58	0.1959	TRUE	0	0	0	3	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1698	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1698	TRUE	0	0	0	434	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	13	0	PTMA	6060	chr2:232576693:+	ANP32B	17709	chr9:100773562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1698	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1698	TRUE	0	0	0	4	0	TRUE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	11	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1437	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1437	TRUE	46	1352	75	139	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0914	0.0653	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1567	FALSE	499	1288	110	792	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	3	11	KMT2A	16241	chr11:118352807:+	AFF1	62543	chr4:88005272:+	ONLY_REF_SPLICE	YES	10	65	0.58	0.18	0.0392	0.1437	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.58	0.1829	TRUE	0	0	0	2	0	TRUE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	5	2	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0653	0.0261	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0914	TRUE	0	1	0	84	1	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0653	0.0131	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0784	FALSE	499	1288	110	792	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0653	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0653	FALSE	499	1288	110	792	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0653	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0653	FALSE	462	80	0	856	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	4	3	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0.0392	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0914	TRUE	0	1	0	84	1	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0522	TRUE	0	0	0	434	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	1	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	31	1	0.11	0.8	0.0392	0.0131	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.8	0.0523	TRUE	0	2	0	11	2	TRUE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBA1B--PTMA	3	1	TUBA1B	4414	chr12:49521767:-	PTMA	12641	chr2:232576658:+	INCL_NON_REF_SPLICE	YES	1994	6032	0	0	0.0392	0.0131	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0523	FALSE	0	0	0	4	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBA1B--PTMA	3	1	TUBA1B	4414	chr12:49521767:-	PTMA	12629	chr2:232576646:+	INCL_NON_REF_SPLICE	YES	1994	6312	0	0	0.0392	0.0131	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0523	FALSE	0	0	0	4	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0392	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0392	TRUE	0	0	0	81	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	3	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0392	FALSE	1	11	0	34	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0392	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0392	FALSE	499	1288	110	792	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0392	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0392	FALSE	499	1288	110	792	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FLT3--PAN3	2	1	FLT3	1125	chr13:28674605:-	PAN3	35804	chr13:28830429:+	ONLY_REF_SPLICE	YES	20	1573	0.13	0	0.0261	0.0131	LOCAL_INVERSION:-:+:[37914],FLT3->OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr13:28577411-28674729:-,fms_related_tyrosine_kinase_3,PAN3->PAN3_poly(A)_specific_ribonuclease_subunit,chr13:28712643-28869475:+	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.13	0.0392	FALSE	0	0	0	1	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0.0131	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0392	TRUE	62	24	1	171	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK6--PEX1	2	0	CDK6	4214	chr7:92462405:-	PEX1	25668	chr7:92151559:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	NEIGHBORS[76390],CDK6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:92234235-92465908:-,cyclin-dependent_kinase_6,PEX1->chr7:92116334-92157845:-,peroxisomal_biogenesis_factor_1	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0261	FALSE	0	0	0	1	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf25--DAZAP1	1	2	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	49	285	0.06	0.01	0.0131	0.0261	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.0392	FALSE	6	7	1	24	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FLT3--PAN3	1	1	FLT3	1125	chr13:28674605:-	PAN3	28753	chr13:28748409:+	ONLY_REF_SPLICE	NO	20	170	0.09	0.01	0.0131	0.0131	LOCAL_INVERSION:-:+:[37914],FLT3->OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr13:28577411-28674729:-,fms_related_tyrosine_kinase_3,PAN3->PAN3_poly(A)_specific_ribonuclease_subunit,chr13:28712643-28869475:+	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.09	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIF1A--PPM1A	1	1	HIF1A	1327	chr14:62162557:+	PPM1A	30835	chr14:60749402:+	ONLY_REF_SPLICE	YES	227	27	0.01	0.07	0.0131	0.0131	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PPM1A->chr14:60712470-60765805:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1A	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.07	0.0262	FALSE	0	0	0	2	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--PPP6R1	1	1	PPP1R12C	8950	chr19:55610152:-	PPP6R1	21911	chr19:55758477:-	ONLY_REF_SPLICE	YES	108	10	0.02	0.17	0.0131	0.0131	GTEx_FI:{Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Small_Intestine_-_Terminal_Ileum=1,Esophagus_-_Muscularis=1,Colon_-_Transverse=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,PPP6R1->chr19:55741148-55770363:-,protein_phosphatase_6_regulatory_subunit_1	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.17	0.0262	TRUE	2	0	0	2	0	FALSE	ACH-000782
SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	1	1	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0131	0.0131	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.0262	TRUE	37	101	7	40	0	FALSE	ACH-000782
LNZ308_CENTRAL_NERVOUS_SYSTEM	PTCH1--AAED1	547	495	PTCH1	1589	chr9:98278751:-	AAED1	41353	chr9:99417055:-	ONLY_REF_SPLICE	YES	206	17	0.83	0.98	7.175	6.4929	PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,AAED1->AhpC/TSA_antioxidant_enzyme_domain_containing_1,chr9:99401859-99417585:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.83	0.98	13.6679	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PIP4K2C--RP11-210N13.1	209	170	PIP4K2C	2388	chr12:57987905:+	RP11-210N13.1	15162	chr12:44132149:+	ONLY_REF_SPLICE	YES	1530	2	0.2	0.99	2.7415	2.2299	PIP4K2C->chr12:57984957-57997198:+,phosphatidylinositol-5-phosphate_4-kinase_type_2_gamma,RP11-210N13.1->chr12:44130431-44134870:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.2	0.99	4.9714	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MYH9--TXN2	79	349	MYH9	1212	chr22:36783852:-	TXN2	45787	chr22:36876884:-	ONLY_REF_SPLICE	YES	1315	64	0.25	0.87	1.0362	4.5778	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[79020],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,TXN2->chr22:36863083-36878077:-,thioredoxin_2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.25	0.87	5.614	TRUE	0	2	0	1	2	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PTCH1--AAED1	54	361	PTCH1	1589	chr9:98278751:-	AAED1	42422	chr9:99413994:-	ONLY_REF_SPLICE	YES	206	34	0.67	0.92	0.7083	4.7353	PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,AAED1->AhpC/TSA_antioxidant_enzyme_domain_containing_1,chr9:99401859-99417585:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.67	0.92	5.4436	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	EPS8--TMEM52B	108	143	EPS8	3576	chr12:15942095:-	TMEM52B	40719	chr12:10335149:+	ONLY_REF_SPLICE	YES	198	0	0.56	1	1.4166	1.8757	EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,TMEM52B->chr12:10323141-10344400:+,transmembrane_protein_52B	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.56	1	3.2923	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MRPL21--MYEOV	114	77	MRPL21	6294	chr11:68660358:-	MYEOV	18385	chr11:69156278:+	ONLY_REF_SPLICE	YES	44	71	0.81	0.73	1.4953	1.01	MRPL21->chr11:68658744-68671303:-,mitochondrial_ribosomal_protein_L21,MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.73	0.81	2.5053	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	EHD1--ORAOV1	104	99	EHD1	6099	chr11:64641893:-	ORAOV1	18762	chr11:69488089:-	ONLY_REF_SPLICE	YES	716	411	0.22	0.33	1.3642	1.2986	EHD1->EH_domain_containing_1,chr11:64619114-64655768:-,ORAOV1->Oncogene{Bushman},chr11:69467844-69490184:-,oral_cancer_overexpressed_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.22	0.33	2.6628	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	ADAMTS20--OS9	105	56	ADAMTS20	20576	chr12:43826107:-	OS9	44731	chr12:58109543:+	ONLY_REF_SPLICE	YES	0	138	1	0.54	1.3773	0.7346	ADAMTS20->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_20,chr12:43747669-43945724:-,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.54	1	2.1119	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MYH9--FOXRED2	101	27	MYH9	1212	chr22:36783852:-	FOXRED2	53456	chr22:36886314:-	ONLY_REF_SPLICE	YES	1315	15	0.09	0.9	1.3248	0.3542	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[99174],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,FOXRED2->FAD_dependent_oxidoreductase_domain_containing_2,chr22:36883237-36903148:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.09	0.9	1.679	TRUE	0	1	0	1	1	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PTCH1--AAED1	57	148	PTCH1	1435	chr9:98278905:-	AAED1	41353	chr9:99417055:-	ONLY_REF_SPLICE	YES	204	17	0.5	0.92	0.7477	1.9413	PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,AAED1->AhpC/TSA_antioxidant_enzyme_domain_containing_1,chr9:99401859-99417585:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.5	0.92	2.689	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MRPL21--MYEOV	63	104	MRPL21	6294	chr11:68660358:-	MYEOV	16216	chr11:69084301:+	INCL_NON_REF_SPLICE	YES	44	89	0.79	0.65	0.8264	1.3642	MRPL21->chr11:68658744-68671303:-,mitochondrial_ribosomal_protein_L21,MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.65	0.79	2.1906	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	TSFM--RP11-554A11.8	61	66	TSFM	6691	chr12:58186856:+	RP11-554A11.8	17471	chr11:68915208:-	ONLY_REF_SPLICE	YES	5184	0	0.02	1	0.8001	0.8657	TSFM->Ts_translation_elongation_factor,_mitochondrial,chr12:58176372-58201854:+,RP11-554A11.8->chr11:68914696-68939032:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.02	1	1.6658	TRUE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MYH9--TXN2	9	269	MYH9	1212	chr22:36783852:-	TXN2	45837	chr22:36876834:-	ONLY_REF_SPLICE	YES	1315	183	0.17	0.6	0.1181	3.5285	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[79020],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,TXN2->chr22:36863083-36878077:-,thioredoxin_2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.17	0.6	3.6466	TRUE	0	2	0	1	2	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SNAPIN--SEC22B	56	55	SNAPIN	1913	chr1:153632042:+	SEC22B	10836	chr1:145109524:+	ONLY_REF_SPLICE	YES	237	795	0.32	0.12	0.7346	0.7214	SNAPIN->SNAP_associated_protein,chr1:153631130-153634306:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.12	0.32	1.456	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	STX8--RP1-269M15.3	49	74	STX8	8513	chr17:9448489:-	RP1-269M15.3	21112	chr20:41829236:+	ONLY_REF_SPLICE	YES	136	0	0.47	1	0.6427	0.9707	STX8->chr17:9153788-9479908:-,syntaxin_8,RP1-269M15.3->chr20:41818862-41830011:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.47	1	1.6134	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PTCH1--AAED1	8	225	PTCH1	1589	chr9:98278751:-	AAED1	42639	chr9:99413777:-	ONLY_REF_SPLICE	YES	206	137	0.53	0.63	0.1049	2.9513	PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,AAED1->AhpC/TSA_antioxidant_enzyme_domain_containing_1,chr9:99401859-99417585:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.53	0.63	3.0562	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PIP4K2C--RP11-210N13.1	17	185	PIP4K2C	2388	chr12:57987905:+	RP11-210N13.1	14806	chr12:44131793:+	ONLY_REF_SPLICE	YES	1530	0	0.12	1	0.223	2.4267	PIP4K2C->chr12:57984957-57997198:+,phosphatidylinositol-5-phosphate_4-kinase_type_2_gamma,RP11-210N13.1->chr12:44130431-44134870:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.12	1	2.6497	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SUCO--DNM3	45	68	SUCO	2149	chr1:172502637:+	DNM3	51259	chr1:172277868:+	ONLY_REF_SPLICE	YES	34	12	0.77	0.9	0.5903	0.892	SUCO->SUN_domain_containing_ossification_factor,chr1:172501489-172580971:+,DNM3->chr1:171810621-172387606:+,dynamin_3	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.77	0.9	1.4823	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MYH9--TXN2	1	207	MYH9	1212	chr22:36783852:-	TXN2	45876	chr22:36876795:-	ONLY_REF_SPLICE	NO	1315	501	0.14	0.29	0.0131	2.7152	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[79020],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,TXN2->chr22:36863083-36878077:-,thioredoxin_2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.14	0.29	2.7283	TRUE	0	2	0	1	2	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SMARCA5--ADAMTS20	45	26	SMARCA5	19705	chr4:144468656:+	ADAMTS20	44179	chr12:43840515:-	ONLY_REF_SPLICE	YES	340	47	0.17	0.6	0.5903	0.341	SMARCA5->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_5,chr4:144434616-144478639:+,ADAMTS20->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_20,chr12:43747669-43945724:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.17	0.6	0.9313	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	NUTM2A-AS1--MINPP1	38	51	NUTM2A-AS1	14159	chr10:89048199:-	MINPP1	27523	chr10:89268093:+	ONLY_REF_SPLICE	YES	17	56	0.84	0.61	0.4984	0.669	GTEx_FI:{Skin=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.61	0.84	1.1674	TRUE	3	1	0	6	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	TFG--GPR128	40	37	TFG	5019	chr3:100438902:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	397	0	0.16	1	0.5247	0.4853	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.16	1	1.01	TRUE	12	123	7	17	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	TSFM--RP11-554A11.8	33	35	TSFM	3711	chr12:58180074:+	RP11-554A11.8	17471	chr11:68915208:-	ONLY_REF_SPLICE	YES	5403	0	0.01	1	0.4329	0.4591	TSFM->Ts_translation_elongation_factor,_mitochondrial,chr12:58176372-58201854:+,RP11-554A11.8->chr11:68914696-68939032:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.892	TRUE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	33	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.4329	0.2755	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.98	1	0.7084	TRUE	508	994	45	981	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RPRD2--ARHGAP9	28	38	RPRD2	2578	chr1:150337395:+	ARHGAP9	26305	chr12:57874617:-	ONLY_REF_SPLICE	YES	83	62	0.44	0.52	0.3673	0.4984	RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.44	0.52	0.8657	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	EPS8--TMEM52B	7	116	EPS8	3576	chr12:15942095:-	TMEM52B	41763	chr12:10337929:+	ONLY_REF_SPLICE	YES	198	0	0.38	1	0.0918	1.5216	EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,TMEM52B->chr12:10323141-10344400:+,transmembrane_protein_52B	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.38	1	1.6134	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PTCH1--AAED1	10	103	PTCH1	1435	chr9:98278905:-	AAED1	42422	chr9:99413994:-	ONLY_REF_SPLICE	YES	204	34	0.36	0.77	0.1312	1.3511	PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,AAED1->AhpC/TSA_antioxidant_enzyme_domain_containing_1,chr9:99401859-99417585:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.36	0.77	1.4823	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MED19--GLYATL1P2	25	29	MED19	1259	chr11:57479435:-	GLYATL1P2	7856	chr11:58652379:+	ONLY_REF_SPLICE	YES	54	0	0.5	1	0.3279	0.3804	MED19->chr11:57471186-57479693:-,mediator_complex_subunit_19,GLYATL1P2->chr11:58645775-58660933:+,glycine-N-acyltransferase_like_1_pseudogene_2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.7083	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	NUTM2A-AS1--MINPP1	16	53	NUTM2A-AS1	16801	chr10:89005872:-	MINPP1	27523	chr10:89268093:+	ONLY_REF_SPLICE	YES	3	56	0.96	0.55	0.2099	0.6952	GTEx_FI:{Skin=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},NUTM2A-AS1->NUTM2A_antisense_RNA_1,chr10:88963632-89102369:-,MINPP1->chr10:89264632-89313217:+,multiple_inositol-polyphosphate_phosphatase_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.55	0.96	0.9051	TRUE	1	1	0	6	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	LINC00152--AC093616.4	25	15	LINC00152	14196	chr2:87906288:+	AC093616.4	17233	chr2:88000503:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3279	0.1968	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.5247	FALSE	0	0	0	14	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	IGHMBP2--METTL21B	25	14	IGHMBP2	5164	chr11:68679071:+	METTL21B	24580	chr12:58166800:+	ONLY_REF_SPLICE	YES	13	323	0.75	0.11	0.3279	0.1836	IGHMBP2->chr11:68671310-68708070:+,immunoglobulin_mu_binding_protein_2,METTL21B->chr12:58165275-58176324:+,methyltransferase_like_21B	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.11	0.75	0.5115	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	EPS8--TMEM52B	3	97	EPS8	3576	chr12:15942095:-	TMEM52B	42825	chr12:10339019:+	ONLY_REF_SPLICE	YES	198	4	0.34	0.96	0.0394	1.2724	EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,TMEM52B->chr12:10323141-10344400:+,transmembrane_protein_52B	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.34	0.96	1.3118	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PIP4K2C--RP11-210N13.1	2	101	PIP4K2C	1290	chr12:57985246:+	RP11-210N13.1	15162	chr12:44132149:+	ONLY_REF_SPLICE	YES	1482	2	0.06	0.98	0.0262	1.3248	PIP4K2C->chr12:57984957-57997198:+,phosphatidylinositol-5-phosphate_4-kinase_type_2_gamma,RP11-210N13.1->chr12:44130431-44134870:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.06	0.98	1.351	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MIPEPP3--ABHD12	25	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3279	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.3279	TRUE	64	202	9	44	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	21	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	353	5	0.07	0.83	0.2755	0.0525	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.07	0.83	0.328	TRUE	519	3926	326	965	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	TSFM--RP11-554A11.8	4	71	TSFM	9048	chr12:58191316:+	RP11-554A11.8	17471	chr11:68915208:-	INCL_NON_REF_SPLICE	YES	34	0	0.69	1	0.0525	0.9313	TSFM->Ts_translation_elongation_factor,_mitochondrial,chr12:58176372-58201854:+,RP11-554A11.8->chr11:68914696-68939032:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.69	1	0.9838	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	EHD1--ORAOV1	17	17	EHD1	6099	chr11:64641893:-	ORAOV1	22092	chr11:69482780:-	ONLY_REF_SPLICE	YES	716	506	0.05	0.06	0.223	0.223	EHD1->EH_domain_containing_1,chr11:64619114-64655768:-,ORAOV1->Oncogene{Bushman},chr11:69467844-69490184:-,oral_cancer_overexpressed_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.05	0.06	0.446	TRUE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	EHD1--ORAOV1	8	52	EHD1	6099	chr11:64641893:-	ORAOV1	20264	chr11:69486587:-	ONLY_REF_SPLICE	YES	716	439	0.08	0.12	0.1049	0.6821	EHD1->EH_domain_containing_1,chr11:64619114-64655768:-,ORAOV1->Oncogene{Bushman},chr11:69467844-69490184:-,oral_cancer_overexpressed_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.08	0.12	0.787	TRUE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	VPS45--MRGPRF	16	20	VPS45	5608	chr1:150049309:+	MRGPRF	22570	chr11:68777425:-	ONLY_REF_SPLICE	YES	288	0	0.11	1	0.2099	0.2623	VPS45->chr1:150039369-150117505:+,vacuolar_protein_sorting_45_homolog,MRGPRF->MAS_related_GPR_family_member_F,chr11:68771863-68780877:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.4722	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	20	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2623	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.2623	TRUE	402	216	10	229	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	OS9--AVIL	16	12	OS9	7771	chr12:58112965:+	AVIL	24667	chr12:58197174:-	ONLY_REF_SPLICE	YES	440	127	0.06	0.18	0.2099	0.1574	LOCAL_INVERSION:+:-:[75819],OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin,AVIL->advillin,chr12:58191159-58212487:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.06	0.18	0.3673	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-25I15.2--MUC19	17	5	RP11-25I15.2	3913	chr12:43064295:+	MUC19	71192	chr12:40924075:+	ONLY_REF_SPLICE	YES	0	7	1	0.76	0.223	0.0656	RP11-25I15.2->chr12:43040385-43080503:+,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.76	1	0.2886	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RPRD2--ARHGAP9	11	29	RPRD2	2578	chr1:150337395:+	ARHGAP9	27351	chr12:57873571:-	ONLY_REF_SPLICE	YES	83	70	0.33	0.36	0.1443	0.3804	RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.33	0.36	0.5247	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	ADAMTS20--OS9	4	56	ADAMTS20	21422	chr12:43825261:-	OS9	44731	chr12:58109543:+	INCL_NON_REF_SPLICE	YES	0	138	1	0.3	0.0525	0.7346	ADAMTS20->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_20,chr12:43747669-43945724:-,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.3	1	0.7871	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	16	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2099	0.0918	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.3017	FALSE	416	2512	207	587	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-CO1--MT-RNR2	12	22	MT-CO1	1653	chrM:6556:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	26334	0	0	1	0.1574	0.2886	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	1	0.446	FALSE	44	51	6	21	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	16	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2099	0.0262	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.2361	FALSE	462	80	0	856	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PHF20--STX8	11	20	PHF20	19614	chr20:34487570:+	STX8	44519	chr17:9408479:-	ONLY_REF_SPLICE	YES	20	130	0.61	0.19	0.1443	0.2623	PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,STX8->chr17:9153788-9479908:-,syntaxin_8	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.19	0.61	0.4066	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SMARCA4--CARM1	15	4	SMARCA4	18944	chr19:11121207:+	CARM1	48111	chr19:11015627:+	ONLY_REF_SPLICE	YES	249	93	0.07	0.17	0.1968	0.0525	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[38145],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.07	0.17	0.2493	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PTCH1--AAED1	1	58	PTCH1	1589	chr9:98278751:-	AAED1	44877	chr9:99404168:-	ONLY_REF_SPLICE	NO	206	347	0.22	0.15	0.0131	0.7608	PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,AAED1->AhpC/TSA_antioxidant_enzyme_domain_containing_1,chr9:99401859-99417585:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.15	0.22	0.7739	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	12	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	97	49	0.19	0.32	0.1574	0.1443	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.19	0.32	0.3017	TRUE	267	562	48	632	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	TSFM--RP11-554A11.8	2	45	TSFM	4582	chr12:58180945:+	RP11-554A11.8	17471	chr11:68915208:-	ONLY_REF_SPLICE	YES	5578	0	0.01	1	0.0262	0.5903	TSFM->Ts_translation_elongation_factor,_mitochondrial,chr12:58176372-58201854:+,RP11-554A11.8->chr11:68914696-68939032:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.6165	TRUE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PRMT3--FAM19A2	11	7	PRMT3	18100	chr11:20515800:+	FAM19A2	43995	chr12:62417560:-	ONLY_REF_SPLICE	YES	141	0	0.11	1	0.1443	0.0918	PRMT3->chr11:20409076-20530840:+,protein_arginine_methyltransferase_3,FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.2361	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MED19--GLYATL1P2	4	29	MED19	1259	chr11:57479435:-	GLYATL1P2	6732	chr11:58645731:+	INCL_NON_REF_SPLICE	YES	54	0	0.38	1	0.0525	0.3804	MED19->chr11:57471186-57479693:-,mediator_complex_subunit_19,GLYATL1P2->chr11:58645775-58660933:+,glycine-N-acyltransferase_like_1_pseudogene_2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.4329	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-312O7.2--ARHGAP9	9	7	RP11-312O7.2	2914	chr1:206135293:-	ARHGAP9	8257	chr12:57874617:-	ONLY_REF_SPLICE	YES	0	62	1	0.21	0.1181	0.0918	RP11-312O7.2->chr1:206135293-206137984:-,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.21	1	0.2099	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-CO1--MT-RNR2	4	26	MT-CO1	2223	chrM:7126:+	MT-RNR2	5562	chrM:1690:+	INCL_NON_REF_SPLICE	NO	18185	0	0	1	0.0525	0.341	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	1	0.3935	FALSE	44	51	6	21	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	7	10	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.0918	0.1312	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.223	TRUE	477	1352	189	275	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	7	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	96	49	0.14	0.25	0.0918	0.1181	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.14	0.25	0.2099	TRUE	267	562	48	632	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	NCOA1--FAM228A	8	5	NCOA1	11791	chr2:24905997:+	FAM228A	37117	chr2:24398336:+	ONLY_REF_SPLICE	YES	28	0	0.32	1	0.1049	0.0656	NCOA1->Oncogene{Bushman},chr2:24714783-24993571:+,nuclear_receptor_coactivator_1,FAM228A->chr2:24397938-24423718:+,family_with_sequence_similarity_228_member_A	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.32	1	0.1705	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-ND1--MT-RNR2	9	0	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1181	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.1181	FALSE	114	26	4	85	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-CO1--MT-RNR2	8	3	MT-CO1	1446	chrM:6349:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	22195	0	0	1	0.1049	0.0394	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	1	0.1443	FALSE	44	51	6	21	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RPRD2--ARHGAP9	3	23	RPRD2	2578	chr1:150337395:+	ARHGAP9	27715	chr12:57873207:-	ONLY_REF_SPLICE	YES	83	93	0.24	0.22	0.0394	0.3017	RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.22	0.24	0.3411	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PHF20--STX8	6	10	PHF20	19614	chr20:34487570:+	STX8	45644	chr17:9395238:-	ONLY_REF_SPLICE	YES	20	111	0.44	0.13	0.0787	0.1312	PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,STX8->chr17:9153788-9479908:-,syntaxin_8	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.13	0.44	0.2099	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	7	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	47	1	0.22	0.0918	0.0787	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.22	1	0.1705	TRUE	465	1949	224	605	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-ND1--MT-RNR2	8	0	MT-ND1	1454	chrM:3760:+	MT-RNR2	5501	chrM:2215:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1049	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.1049	FALSE	120	26	5	87	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	OS9--AVIL	5	12	OS9	7771	chr12:58112965:+	AVIL	24389	chr12:58197452:-	ONLY_REF_SPLICE	YES	440	73	0.04	0.19	0.0656	0.1574	LOCAL_INVERSION:+:-:[75819],OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin,AVIL->advillin,chr12:58191159-58212487:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.04	0.19	0.223	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PRKAR1B--AC147651.4	7	4	PRKAR1B	11062	chr7:716866:-	AC147651.4	25032	chr7:647502:+	ONLY_REF_SPLICE	YES	53	0	0.17	1	0.0918	0.0525	NEIGHBORS_OVERLAP:-:+:[5297],PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta,AC147651.4->chr7:642822-648119:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.17	1	0.1443	FALSE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-CO1--MT-RNR2	6	7	MT-CO1	1642	chrM:6545:+	MT-RNR2	6082	chrM:2210:+	INCL_NON_REF_SPLICE	YES	25429	13754	0	0	0.0787	0.0918	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0	0.1705	FALSE	44	51	6	21	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MYH9--FOXRED2	1	27	MYH9	5055	chr22:36737415:-	FOXRED2	53456	chr22:36886314:-	ONLY_REF_SPLICE	YES	945	15	0.03	0.65	0.0131	0.3542	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[99174],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,FOXRED2->FAD_dependent_oxidoreductase_domain_containing_2,chr22:36883237-36903148:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.03	0.65	0.3673	TRUE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PSMA1--METTL21B	7	3	PSMA1	2367	chr11:14632512:-	METTL21B	19597	chr12:58166800:+	ONLY_REF_SPLICE	YES	12	323	0.45	0.03	0.0918	0.0394	PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1,METTL21B->chr12:58165275-58176324:+,methyltransferase_like_21B	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.03	0.45	0.1312	TRUE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-CO1--MT-RNR2	4	14	MT-CO1	1635	chrM:6538:+	MT-RNR2	5554	chrM:1682:+	INCL_NON_REF_SPLICE	YES	24861	0	0	1	0.0525	0.1836	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	1	0.2361	FALSE	44	51	6	21	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	6	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	8	1	0.6	0.0787	0.0787	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.6	1	0.1574	TRUE	458	1351	185	561	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MYH9--TXN2	2	21	MYH9	1212	chr22:36783852:-	TXN2	48974	chr22:36863964:-	ONLY_REF_SPLICE	YES	1315	819	0.02	0.03	0.0262	0.2755	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[79020],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,TXN2->chr22:36863083-36878077:-,thioredoxin_2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.3017	TRUE	0	5	0	1	2	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	6	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	11527	26159	0	0	0.0787	0.0262	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0	0.1049	FALSE	183	104	9	328	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-CO1--MT-RNR2	4	9	MT-CO1	1603	chrM:6506:+	MT-RNR2	5550	chrM:1678:+	INCL_NON_REF_SPLICE	YES	22132	0	0	1	0.0525	0.1181	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	1	0.1706	FALSE	44	51	6	21	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RPRD2--ARHGAP9	3	12	RPRD2	2578	chr1:150337395:+	ARHGAP9	27848	chr12:57873074:-	INCL_NON_REF_SPLICE	YES	83	98	0.15	0.13	0.0394	0.1574	RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.13	0.15	0.1968	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	5	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	11310	25261	0	0	0.0656	0.0262	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0	0.0918	FALSE	183	104	9	328	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	CELF1--RP11-94P11.4	2	13	CELF1	3345	chr11:47574544:-	RP11-94P11.4	32741	chr11:105139038:-	ONLY_REF_SPLICE	YES	97	0	0.13	1	0.0262	0.1705	CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,RP11-94P11.4->chr11:105028654-105402424:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.13	1	0.1967	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	NAV2--AP000439.2	4	5	NAV2	15791	chr11:19961319:+	AP000439.2	60691	chr11:69253621:-	ONLY_REF_SPLICE	YES	17	0	0.35	1	0.0525	0.0656	NAV2->chr11:19372271-20143144:+,neuron_navigator_2,AP000439.2->chr11:69253133-69259511:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.35	1	0.1181	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-ND1--MT-RNR2	5	0	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0656	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0656	FALSE	114	26	4	85	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	NCOA1--FAM228A	4	4	NCOA1	11791	chr2:24905997:+	FAM228A	38224	chr2:24400671:+	ONLY_REF_SPLICE	YES	28	1	0.22	0.89	0.0525	0.0525	NCOA1->Oncogene{Bushman},chr2:24714783-24993571:+,nuclear_receptor_coactivator_1,FAM228A->chr2:24397938-24423718:+,family_with_sequence_similarity_228_member_A	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.22	0.89	0.105	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RNF152--RP11-879F14.1	5	0	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0656	0	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0656	FALSE	275	472	65	43	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	11	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.0262	0.1443	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.1705	TRUE	160	277	29	98	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SYNPO--PPARGC1B	4	3	SYNPO	8929	chr5:150029865:+	PPARGC1B	26621	chr5:149206236:+	ONLY_REF_SPLICE	YES	111	1	0.06	0.88	0.0525	0.0394	SYNPO->chr5:149980642-150038782:+,synaptopodin,PPARGC1B->PPARG_coactivator_1_beta,chr5:149109861-149234585:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.06	0.88	0.0919	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	4	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0525	0.0262	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0787	FALSE	462	80	0	856	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PDE3B--RP1-178F15.5	3	6	PDE3B	2331	chr11:14666599:+	RP1-178F15.5	36264	chr1:153599009:-	ONLY_REF_SPLICE	YES	23	91	0.28	0.09	0.0394	0.0787	PDE3B->chr11:14665269-14892350:+,phosphodiesterase_3B,RP1-178F15.5->chr1:153598808-153606816:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.09	0.28	0.1181	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PLEKHG1--PPP1R14C	4	2	PLEKHG1	1155	chr6:150921153:+	PPP1R14C	31201	chr6:150569882:+	ONLY_REF_SPLICE	YES	1	39	0.86	0.13	0.0525	0.0262	PLEKHG1->chr6:150920999-151164799:+,pleckstrin_homology_and_RhoGEF_domain_containing_G1,PPP1R14C->chr6:150464212-150571493:+,protein_phosphatase_1_regulatory_inhibitor_subunit_14C	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.13	0.86	0.0787	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	5	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3444	26513	0	0	0.0394	0.0656	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0	0.105	FALSE	183	104	9	328	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-CO2--S100A6	4	1	MT-CO2	1233	chrM:7818:+	S100A6	4935	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	17756	31	0	0.14	0.0525	0.0131	MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0.14	0.0656	FALSE	0	0	0	4	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-312O7.2--ARHGAP9	3	5	RP11-312O7.2	2914	chr1:206135293:-	ARHGAP9	9667	chr12:57873207:-	ONLY_REF_SPLICE	YES	0	93	1	0.08	0.0394	0.0656	RP11-312O7.2->chr1:206135293-206137984:-,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.105	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTG1	4	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0525	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0525	TRUE	0	0	0	64	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0525	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0525	FALSE	292	1546	117	613	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PIP4K2C--RP11-210N13.1	2	7	PIP4K2C	2388	chr12:57987905:+	RP11-210N13.1	17653	chr12:44134640:+	ONLY_REF_SPLICE	YES	1530	3	0.01	0.75	0.0262	0.0918	PIP4K2C->chr12:57984957-57997198:+,phosphatidylinositol-5-phosphate_4-kinase_type_2_gamma,RP11-210N13.1->chr12:44130431-44134870:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.01	0.75	0.118	TRUE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.75	0.86	0.0394	0.0394	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.75	0.86	0.0788	FALSE	515	4851	409	746	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11475	25771	0	0	0.0394	0.0262	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0	0.0656	FALSE	183	104	9	328	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	10	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0131	0.1312	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.1443	TRUE	274	363	69	150	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	CPQ--SDC2	3	1	CPQ	1176	chr8:97657630:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	26	1159	0.13	0	0.0394	0.0131	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0.13	0.0525	FALSE	1	37	5	9	9	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PHF20--STX8	1	9	PHF20	18271	chr20:34459751:+	STX8	44519	chr17:9408479:-	ONLY_REF_SPLICE	NO	26	130	0.28	0.07	0.0131	0.1181	PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,STX8->chr17:9153788-9479908:-,syntaxin_8	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.07	0.28	0.1312	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-308N19.1--RP11-308N19.4	2	5	RP11-308N19.1	6003	chr9:109320864:+	RP11-308N19.4	15583	chr9:109427034:+	ONLY_REF_SPLICE	YES	44	0	0.14	1	0.0262	0.0656	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.0918	FALSE	0	0	0	4	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	AHNAK--NDEL1	3	0	AHNAK	18072	chr11:62290286:-	NDEL1	49697	chr17:8370659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-,NDEL1->chr17:8316449-8393729:+,nudE_neurodevelopment_protein_1_like_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-ND1--MT-RNR2	3	0	MT-ND1	1461	chrM:3767:+	MT-RNR2	5525	chrM:2239:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0394	FALSE	120	26	5	87	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-ND1--MT-RNR2	3	0	MT-ND1	1297	chrM:3603:+	MT-RNR2	4976	chrM:1690:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0394	FALSE	114	26	4	85	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0394	FALSE	462	80	0	856	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PDE3B--RP1-178F15.5	1	8	PDE3B	2331	chr11:14666599:+	RP1-178F15.5	32330	chr1:153604716:-	ONLY_REF_SPLICE	YES	23	12	0.28	0.43	0.0131	0.1049	PDE3B->chr11:14665269-14892350:+,phosphodiesterase_3B,RP1-178F15.5->chr1:153598808-153606816:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.28	0.43	0.118	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	VPS45--MRGPRF	1	8	VPS45	5361	chr1:150049062:+	MRGPRF	22570	chr11:68777425:-	ONLY_REF_SPLICE	YES	262	0	0.03	1	0.0131	0.1049	VPS45->chr1:150039369-150117505:+,vacuolar_protein_sorting_45_homolog,MRGPRF->MAS_related_GPR_family_member_F,chr11:68771863-68780877:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.118	TRUE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	ADAMTS20--OS9	2	3	ADAMTS20	17941	chr12:43833425:-	OS9	44731	chr12:58109543:+	ONLY_REF_SPLICE	YES	80	138	0.06	0.03	0.0262	0.0394	ADAMTS20->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_20,chr12:43747669-43945724:-,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.03	0.06	0.0656	TRUE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PDE3B--RP1-178F15.5	1	6	PDE3B	2331	chr11:14666599:+	RP1-178F15.5	35199	chr1:153600074:-	ONLY_REF_SPLICE	YES	23	9	0.23	0.44	0.0131	0.0787	PDE3B->chr11:14665269-14892350:+,phosphodiesterase_3B,RP1-178F15.5->chr1:153598808-153606816:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.23	0.44	0.0918	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SMARCA4--CARM1	2	2	SMARCA4	17793	chr19:11118699:+	CARM1	48111	chr19:11015627:+	ONLY_REF_SPLICE	YES	224	93	0.02	0.04	0.0262	0.0262	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[38145],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.02	0.04	0.0524	TRUE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PDGFRB--ACTB	2	1	PDGFRB	21269	chr5:149497181:-	ACTB	31733	chr7:5569294:-	ONLY_REF_SPLICE	YES	314	217	0.01	0.01	0.0262	0.0131	PDGFRB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:149493400-149535435:-,platelet_derived_growth_factor_receptor_beta,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0393	FALSE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PPP1R12C--CNN2	2	1	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	220	1391	0.01	0	0.0262	0.0131	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0393	FALSE	35	34	3	30	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RNF152--RP11-879F14.1	2	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	YES	50	0	0.06	1	0.0262	0.0131	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0393	FALSE	119	124	24	18	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	57	0.5	0.05	0.0262	0.0131	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.05	0.5	0.0393	FALSE	16	356	14	466	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SF1--FUS	2	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	962	1005	0	0	0.0262	0.0131	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0	0.0393	FALSE	5	20	0	32	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	YWHAE--CRK	2	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	3316	150	0	0.02	0.0262	0.0131	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0393	FALSE	6	50	7	115	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	CSTF2--PLS3	2	0	CSTF2	2211	chrX:100076594:+	PLS3	22158	chrX:114856558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	CSTF2->chrX:100075384-100095921:+,cleavage_stimulation_factor_subunit_2,PLS3->chrX:114795501-114885181:+,plastin_3	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	DANCR--PMEPA1	2	0	DANCR	1530	chr4:53579126:+	PMEPA1	13788	chr20:56234753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,PMEPA1->Oncogene{Bushman},chr20:56223448-56286592:-,prostate_transmembrane_protein,_androgen_induced_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	DDX39A--ILF3	2	0	DDX39A	1111	chr19:14530082:-	ILF3	15594	chr19:10781192:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	DDX39A->DEAD-box_helicase_39A,chr19:14519631-14530192:-,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	LGALS1--TXLNA	2	0	LGALS1	4047	chr22:38074661:+	TXLNA	16304	chr1:32659666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1,TXLNA->chr1:32645287-32663886:+,taxilin_alpha	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	MAP4--ALDH7A1	2	0	MAP4	1507	chr3:48130263:-	ALDH7A1	53389	chr5:125896816:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,ALDH7A1->aldehyde_dehydrogenase_7_family_member_A1,chr5:125877533-125931110:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	NDUFA4--PHF14	2	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	19	32	3	60	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	7	0	0.42	1	0.0131	0.0525	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.42	1	0.0656	FALSE	164	806	69	479	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	NUPL2--PPP1CC	2	0	NUPL2	3987	chr7:23226765:+	PPP1CC	22447	chr12:111162569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,PPP1CC->Oncogene{Bushman},chr12:111157485-111180744:-,protein_phosphatase_1_catalytic_subunit_gamma	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	OSBPL10--ASAH1	2	0	OSBPL10	10820	chr3:31917925:-	ASAH1	43176	chr8:17928899:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10,ASAH1->N-acylsphingosine_amidohydrolase_(acid_ceramidase)_1,chr8:17913934-17942494:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RB1--ITM2B	2	0	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	53	73	8	19	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SF1--ALG3	2	0	SF1	3289	chr11:64543970:-	ALG3	18031	chr3:183963600:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	SF1->chr11:64532078-64546258:-,splicing_factor_1,ALG3->ALG3,_alpha-1,3-_mannosyltransferase,chr3:183960089-183967336:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SPIN3--TDRD3	2	0	SPIN3	1815	chrX:57021156:-	TDRD3	13560	chr13:61018817:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	SPIN3->chrX:57002803-57021970:-,spindlin_family_member_3,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SPOP--MTHFD1L	2	0	SPOP	1302	chr17:47755295:-	MTHFD1L	48727	chr6:151330955:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,MTHFD1L->chr6:151186685-151423023:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_1-like	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SREBF2--VCL	2	0	SREBF2	1254	chr22:42229362:+	VCL	30646	chr10:75802841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	ST5--SNTG2	2	0	ST5	25185	chr11:8772168:-	SNTG2	76507	chr2:1312266:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	ST5->Oncogene{Bushman},chr11:8714898-8932498:-,suppression_of_tumorigenicity_5,SNTG2->chr2:946554-1371385:+,syntrophin_gamma_2	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	STK25--PTMA	2	0	STK25	2725	chr2:242447421:-	PTMA	21539	chr2:232576058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	STK25->chr2:242432089-242449145:-,serine/threonine_kinase_25,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	2	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	TANK--PSMD14	2	0	TANK	2346	chr2:162016997:+	PSMD14	27441	chr2:162223989:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	NEIGHBORS[71817],TANK->TRAF_family_member_associated_NFKB_activator,chr2:161993419-162092732:+,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	FALSE	0	1	0	2	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	TENM2--MMS22L	2	0	TENM2	3594	chr5:167001031:+	MMS22L	62345	chr6:97711324:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2,MMS22L->MMS22_like,_DNA_repair_protein,chr6:97590037-97731093:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	VAV2--NDST4	2	0	VAV2	1530	chr9:136857197:-	NDST4	43219	chr4:115898430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,NDST4->N-deacetylase/N-sulfotransferase_4,chr4:115748919-116035032:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0.0394	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	1	1	0.0525	FALSE	93	270	15	244	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	LINC00152--AC093616.4	1	2	LINC00152	1278	chr2:87755164:+	AC093616.4	17233	chr2:88000503:+	ONLY_REF_SPLICE	NO	617	0	0	1	0.0131	0.0262	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	1	0.0393	FALSE	0	0	0	11	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SMARCA4--CARM1	1	2	SMARCA4	16671	chr19:11114073:+	CARM1	48111	chr19:11015627:+	ONLY_REF_SPLICE	YES	207	93	0.01	0.03	0.0131	0.0262	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[38145],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0393	FALSE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	ADAM9--DDHD2	1	1	ADAM9	1292	chr8:38854679:+	DDHD2	42999	chr8:38105231:+	ONLY_REF_SPLICE	YES	571	65	0	0.03	0.0131	0.0131	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,DDHD2->DDHD_domain_containing_2,chr8:38082736-38133076:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	ASAP2--S100A6	1	1	ASAP2	22529	chr2:9528675:+	S100A6	35071	chr1:153508467:-	ONLY_REF_SPLICE	YES	14	32	0.12	0.06	0.0131	0.0131	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.06	0.12	0.0262	TRUE	0	0	0	2	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	ASUN--ITPR2	1	1	ASUN	5675	chr12:27081138:-	ITPR2	69439	chr12:26628351:-	ONLY_REF_SPLICE	YES	64	82	0.03	0.02	0.0131	0.0131	NEIGHBORS[71983],ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	CD63--PMM1	1	1	CD63	4008	chr12:56120484:-	PMM1	10462	chr22:41982197:-	ONLY_REF_SPLICE	YES	3644	78	0	0.03	0.0131	0.0131	CD63->CD63_molecule,chr12:56119107-56123491:-,PMM1->chr22:41972898-41985894:-,phosphomannomutase_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	CPQ--SDC2	1	1	CPQ	9826	chr8:97892233:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	NO	99	1159	0.02	0	0.0131	0.0131	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0262	FALSE	2	35	6	7	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	DSCR3--TTC3	1	1	DSCR3	1724	chr21:38639539:-	TTC3	27006	chr21:38459547:+	ONLY_REF_SPLICE	YES	65	71	0.03	0.03	0.0131	0.0131	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.03	0.03	0.0262	TRUE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	DSCR3--TTC3	1	1	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	65	98	0.03	0.02	0.0131	0.0131	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.0262	TRUE	0	9	0	44	1	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	EBF1--TTC1	1	1	EBF1	6894	chr5:158500404:-	TTC1	27959	chr5:159462147:+	ONLY_REF_SPLICE	YES	43	327	0.04	0.01	0.0131	0.0131	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,TTC1->chr5:159436120-159492550:+,tetratricopeptide_repeat_domain_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.01	0.04	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	GLB1L3--NOL12	1	1	GLB1L3	4207	chr11:134147345:+	NOL12	46664	chr22:38147779:+	ONLY_REF_SPLICE	NO	0	2	1	0.5	0.0131	0.0131	GLB1L3->chr11:134144139-134189458:+,galactosidase_beta_1_like_3,NOL12->chr22:38077680-38170137:+,nucleolar_protein_12	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	GLB1L3--NOL12	1	1	GLB1L3	3519	chr11:134146657:+	NOL12	46664	chr22:38147779:+	ONLY_REF_SPLICE	YES	1	2	0.67	0.5	0.0131	0.0131	GLB1L3->chr11:134144139-134189458:+,galactosidase_beta_1_like_3,NOL12->chr22:38077680-38170137:+,nucleolar_protein_12	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.5	0.67	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	GNG10--UGCG	1	1	GNG10	2513	chr9:114429226:+	UGCG	9040	chr9:114676885:+	ONLY_REF_SPLICE	YES	547	38	0	0.05	0.0131	0.0131	GTEx_FI:{Brain=[count:10=pct:1.5],Blood=[count:7=pct:4.0],Adipose_Tissue=[count:5=pct:1.7],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Uterus=[count:1=pct:2.3],Esophagus=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6]},GNG10->G_protein_subunit_gamma_10,chr9:114423615-114432526:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0.05	0.0262	FALSE	28	83	9	3	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	HS2ST1--SEP15	1	1	HS2ST1	1513	chr1:87380843:+	SEP15	26013	chr1:87369131:-	ONLY_REF_SPLICE	YES	119	141	0.02	0.01	0.0131	0.0131	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0262	FALSE	0	2	0	9	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	HS2ST1--SEP15	1	1	HS2ST1	1513	chr1:87380843:+	SEP15	28222	chr1:87346408:-	ONLY_REF_SPLICE	NO	119	2061	0.02	0	0.0131	0.0131	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0262	FALSE	0	3	0	8	1	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	ITGA9--OXSR1	1	1	ITGA9	16949	chr3:37584076:+	OXSR1	42249	chr3:38232222:+	ONLY_REF_SPLICE	NO	107	68	0.02	0.03	0.0131	0.0131	GTEx&tcga_normals:1/3694=0.03%,ITGA9->Oncogene{Bushman},chr3:37493606-37865005:+,integrin_subunit_alpha_9,OXSR1->chr3:38206580-38296979:+,oxidative_stress_responsive_1	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.0262	TRUE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	LIN54--TMEM150C	1	1	LIN54	1135	chr4:83933945:-	TMEM150C	26496	chr4:83425820:-	ONLY_REF_SPLICE	YES	7	2	0.22	0.5	0.0131	0.0131	LIN54->chr4:83831126-83934079:-,lin-54_DREAM_MuvB_core_complex_component,TMEM150C->chr4:83404323-83483510:-,transmembrane_protein_150C	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.22	0.5	0.0262	TRUE	0	1	0	1	1	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	NASP--EEF1D	1	1	NASP	6970	chr1:46068037:+	EEF1D	35610	chr8:144669022:-	ONLY_REF_SPLICE	YES	1013	320	0	0.01	0.0131	0.0131	NASP->chr1:46049518-46084566:+,nuclear_autoantigenic_sperm_protein,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	PAFAH1B2--SIK3	1	1	PAFAH1B2	1152	chr11:117015134:+	SIK3	18973	chr11:116827780:-	ONLY_REF_SPLICE	NO	96	9	0.02	0.18	0.0131	0.0131	LOCAL_INVERSION:+:-:[45830],PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,SIK3->Oncogene{Bushman},SIK_family_kinase_3,chr11:116714118-116969153:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.02	0.18	0.0262	TRUE	0	1	0	2	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-571M6.15--FAM19A2	1	1	RP11-571M6.15	2275	chr12:58177066:+	FAM19A2	27809	chr12:62464343:-	ONLY_REF_SPLICE	YES	1655	0	0	1	0.0131	0.0131	RP11-571M6.15->chr12:58166811-58180829:+,FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	1	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RP11-640M9.1--SEC22B	1	1	RP11-640M9.1	3158	chr1:144519813:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	YES	41	795	0.05	0	0.0131	0.0131	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0.05	0.0262	FALSE	20	16	6	14	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	RPRD2--MRPS21	1	1	RPRD2	4855	chr1:150390201:+	MRPS21	25544	chr1:150280482:+	ONLY_REF_SPLICE	YES	120	802	0.02	0	0.0131	0.0131	GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Brain_-_Frontal_Cortex_(BA9)=1},LOCAL_REARRANGEMENT:+:[54153],RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,MRPS21->chr1:150266289-150281414:+,mitochondrial_ribosomal_protein_S21	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0262	FALSE	0	2	0	1	1	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SHFM1--SLC25A13	1	1	SHFM1	7020	chr7:96324110:-	SLC25A13	31638	chr7:95822495:-	ONLY_REF_SPLICE	YES	932	239	0	0.01	0.0131	0.0131	GTEx&tcga_normals:2/3694=0.05%,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SNHG3--CTC-260F20.3	1	1	SNHG3	3181	chr1:28834672:+	CTC-260F20.3	10020	chr19:19636991:+	ONLY_REF_SPLICE	YES	39	195	0.05	0.01	0.0131	0.0131	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,CTC-260F20.3->chr19:19627036-19646885:+	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.01	0.05	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	SPON1--B4GALNT1	1	1	SPON1	7362	chr11:14157114:+	B4GALNT1	24577	chr12:58025916:-	ONLY_REF_SPLICE	YES	0	1121	1	0	0.0131	0.0131	SPON1->chr11:13983914-14289646:+,spondin_1,B4GALNT1->beta-1,4-N-acetyl-galactosaminyltransferase_1,chr12:58017193-58027138:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	1	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	VAV2--NDST4	1	1	VAV2	2729	chr9:136804225:-	NDST4	43219	chr4:115898430:-	ONLY_REF_SPLICE	YES	17	0	0.11	1	0.0131	0.0131	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,NDST4->N-deacetylase/N-sulfotransferase_4,chr4:115748919-116035032:-	LNZ308_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000760
LNZ308_CENTRAL_NERVOUS_SYSTEM	ZNF484--IARS	1	1	ZNF484	3756	chr9:95618093:-	IARS	44173	chr9:94973171:-	ONLY_REF_SPLICE	NO	2	749	0.5	0	0.0131	0.0131	ZNF484->chr9:95607874-95640304:-,zinc_finger_protein_484,IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase	LNZ308_CENTRAL_NERVOUS_SYSTEM	0	0.5	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000760
T173_FIBROBLAST	COL4A1--COL6A1	63	0	COL4A1	20935	chr13:110838732:-	COL6A1	54417	chr21:47410715:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9005	0	HGNC_GENEFAM,PROTCLUST,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	T173_FIBROBLAST	1	1	0.9005	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	COL1A2--FN1	7	22	COL1A2	23728	chr7:94051247:+	FN1	36441	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	3310	2843	0.01	0.01	0.1001	0.3145	GTEx&tcga_normals:10/3694=0.27%,GTEx:0.03%,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	T173_FIBROBLAST	0.01	0.01	0.4146	TRUE	0	0	0	3	0	FALSE	ACH-000529
T173_FIBROBLAST	TIMM23B--PARGP1	8	6	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1143	0.0858	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	T173_FIBROBLAST	1	1	0.2001	TRUE	393	2105	140	19	0	FALSE	ACH-000529
T173_FIBROBLAST	MT-TA--MT-TC	5	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	T173_FIBROBLAST	1	1	0.0715	FALSE	462	80	0	856	0	FALSE	ACH-000529
T173_FIBROBLAST	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0572	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	T173_FIBROBLAST	1	1	0.0572	TRUE	458	1351	185	561	0	FALSE	ACH-000529
T173_FIBROBLAST	RPL41--MEDAG	4	0	RPL41	2202	chr12:56511571:+	MEDAG	5801	chr13:31480770:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0572	0	RPL41->chr12:56510370-56511727:+,ribosomal_protein_L41,MEDAG->chr13:31480328-31499709:+,mesenteric_estrogen_dependent_adipogenesis	T173_FIBROBLAST	1	1	0.0572	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	C15orf57--CBX3	3	1	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	14	6	0.22	0.4	0.0429	0.0143	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	T173_FIBROBLAST	0.22	0.4	0.0572	TRUE	267	562	48	632	0	FALSE	ACH-000529
T173_FIBROBLAST	KANSL1--ARL17B	3	1	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	3	4	0.57	0.5	0.0429	0.0143	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	T173_FIBROBLAST	0.5	0.57	0.0572	TRUE	181	1564	124	196	0	FALSE	ACH-000529
T173_FIBROBLAST	HSPA5--MMP2	3	0	HSPA5	1566	chr9:128003044:-	MMP2	24353	chr16:55527112:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0	HSPA5->Oncogene{Bushman},chr9:127997132-128003609:-,heat_shock_protein_family_A_(Hsp70)_member_5,MMP2->Oncogene{Bushman},chr16:55423612-55540603:+,matrix_metallopeptidase_2	T173_FIBROBLAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	NSMF--CKAP4	3	0	NSMF	7599	chr9:140347188:-	CKAP4	21854	chr12:106632095:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0	NSMF->NMDA_receptor_synaptonuclear_signaling_and_neuronal_migration_factor,chr9:140342022-140353786:-,CKAP4->chr12:106631655-106698057:-,cytoskeleton-associated_protein_4	T173_FIBROBLAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	PHTF2--HELLS	3	0	PHTF2	16763	chr7:77558644:+	HELLS	40042	chr10:96333717:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0429	0	PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2,HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific	T173_FIBROBLAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	PTBP1--ZDHHC8	3	0	PTBP1	1431	chr19:797505:+	ZDHHC8	17689	chr22:20126717:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0429	0	PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1,ZDHHC8->chr22:20116979-20135530:+,zinc_finger_DHHC-type_containing_8	T173_FIBROBLAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	RP11-513I15.6--PDIA4	3	0	RP11-513I15.6	6048	chr6:34252503:+	PDIA4	12929	chr7:148718194:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0	RP11-513I15.6->chr6:34247456-34254545:+,PDIA4->chr7:148700154-148725733:-,protein_disulfide_isomerase_family_A_member_4	T173_FIBROBLAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	SLIT3--KDELR2	3	0	SLIT3	48738	chr5:168090729:-	KDELR2	60959	chr7:6502313:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0	SLIT3->chr5:168088745-168728133:-,slit_guidance_ligand_3,KDELR2->KDEL_endoplasmic_reticulum_protein_retention_receptor_2,chr7:6485584-6523873:-	T173_FIBROBLAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	TUBA1C--RGS4	3	0	TUBA1C	7646	chr12:49658967:+	RGS4	17746	chr1:163042185:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0429	0	TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c,RGS4->chr1:163038565-163046592:+,regulator_of_G-protein_signaling_4	T173_FIBROBLAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	ABHD12--PYGB	2	0	ABHD12	15226	chr20:25282855:-	PYGB	39733	chr20:25274794:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},{Klijn_CCL:Other=1},NEIGHBORS_OVERLAP:-:+:[3271],ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-,PYGB->chr20:25228705-25278650:+,phosphorylase,_glycogen;_brain	T173_FIBROBLAST	1	1	0.0286	FALSE	2	1	0	1	0	FALSE	ACH-000529
T173_FIBROBLAST	AC027763.2--TRIP13	2	0	AC027763.2	2496	chr17:6913115:-	TRIP13	21772	chr5:907245:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	AC027763.2->chr17:6779954-6915668:-,TRIP13->chr5:892758-919472:+,thyroid_hormone_receptor_interactor_13	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	C1orf63--NR2F6	2	0	C1orf63	13914	chr1:25571641:-	NR2F6	25198	chr19:17343435:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,NR2F6->Oncogene{Bushman},chr19:17342692-17356749:-,nuclear_receptor_subfamily_2_group_F_member_6	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	CD44--PDHX	2	0	CD44	6502	chr11:35211612:+	PDHX	42230	chr11:35013862:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	2	0	TRUE	ACH-000529
T173_FIBROBLAST	CLPTM1--SYNJ2	2	0	CLPTM1	6770	chr19:45480717:+	SYNJ2	50260	chr6:158516650:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	CLPTM1->chr19:45457842-45496599:+,cleft_lip_and_palate_associated_transmembrane_protein_1,SYNJ2->chr6:158402888-158520208:+,synaptojanin_2	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	COL6A3--KPNA1	2	0	COL6A3	2544	chr2:238305370:-	KPNA1	62602	chr3:122180165:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3,KPNA1->chr3:122140796-122233792:-,karyopherin_subunit_alpha_1	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	FUS--OGT	2	0	FUS	1118	chr16:31191548:+	OGT	32188	chrX:70783179:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+,OGT->O-linked_N-acetylglucosamine_(GlcNAc)_transferase,chrX:70752933-70795747:+	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	G2E3--CREB3L2	2	0	G2E3	1150	chr14:31028478:+	CREB3L2	43029	chr7:137570248:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	G2E3->G2/M-phase_specific_E3_ubiquitin_protein_ligase,chr14:31028329-31089269:+,CREB3L2->Oncogene{Bushman},cAMP_responsive_element_binding_protein_3-like_2,chr7:137559725-137686813:-	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	GAS6--TBL1XR1	2	0	GAS6	1499	chr13:114566548:-	TBL1XR1	22486	chr3:176878776:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	KAT6B--ADK	2	0	KAT6B	5638	chr10:76603236:+	ADK	37695	chr10:76074425:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:2],KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B,ADK->adenosine_kinase,chr10:75910960-76469061:+	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	NT5C2--RP11-33B1.1	2	0	NT5C2	7615	chr10:104899163:-	RP11-33B1.1	45444	chr4:120464908:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	NT5C2->5'-nucleotidase,_cytosolic_II,chr10:104845940-104953056:-,RP11-33B1.1->chr4:120375946-120473180:+	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	RANBP17--FAM208B	2	0	RANBP17	20644	chr5:170410249:+	FAM208B	54237	chr10:5754357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	RANBP17->Oncogene{Bushman},RAN_binding_protein_17,chr5:170288874-170727019:+,FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	RP11-1000B6.3--BTBD1	2	0	RP11-1000B6.3	1960	chr15:32829207:+	BTBD1	12341	chr15:83710677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	RP11-1000B6.3->chr15:32828248-32879814:+,BTBD1->BTB_domain_containing_1,chr15:83685174-83736106:-	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	TMEM143--CTC-273B12.7	2	0	TMEM143	4835	chr19:48848417:-	CTC-273B12.7	15038	chr19:48975582:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	TMEM143->chr19:48835613-48867494:-,transmembrane_protein_143,CTC-273B12.7->chr19:48969094-48975688:+	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	TP53BP2--CAPN2	2	0	TP53BP2	1319	chr1:224033356:-	CAPN2	29060	chr1:223905464:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	LOCAL_INVERSION:-:+:[3881],TP53BP2->Oncogene{Bushman},chr1:223967601-224033674:-,tumor_protein_p53_binding_protein_2,CAPN2->calpain_2,chr1:223889295-223963720:+	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
T173_FIBROBLAST	TSC22D1--PTPRM	2	0	TSC22D1	4985	chr13:45147299:-	PTPRM	40148	chr18:8244056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	TSC22D1->TSC22_domain_family_member_1,chr13:45007655-45151283:-,PTPRM->chr18:7566780-8406859:+,protein_tyrosine_phosphatase,_receptor_type_M	T173_FIBROBLAST	1	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000529
253JBV_URINARY_TRACT	TIMM23B--LINC00843	130	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5494	0.3576	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	253JBV_URINARY_TRACT	1	1	1.907	TRUE	508	994	45	981	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MT-TA--MT-TN	125	2	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4898	0.0238	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253JBV_URINARY_TRACT	1	1	1.5136	FALSE	369	2501	205	193	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	USP34--XPO1	112	10	USP34	1120	chr2:61697785:-	XPO1	85339	chr2:61729445:-	ONLY_REF_SPLICE	YES	10	164	0.92	0.43	1.3349	0.1192	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	253JBV_URINARY_TRACT	0.43	0.92	1.4541	TRUE	0	1	0	4	1	TRUE	ACH-000026
253JBV_URINARY_TRACT	TIMM23--RP11-464F9.1	78	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	299	7	0.21	0.92	0.9296	0.0238	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	253JBV_URINARY_TRACT	0.21	0.92	0.9534	TRUE	519	3926	326	965	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MCU--RP11-344N10.2	55	12	MCU	9177	chr10:74594186:+	RP11-344N10.2	22137	chr10:74831065:+	INCL_NON_REF_SPLICE	YES	25	0	0.73	1	0.6555	0.143	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-344N10.2->chr10:74831053-74833766:+	253JBV_URINARY_TRACT	0.73	1	0.7985	TRUE	0	0	0	2	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	MT-TA--MT-TC	52	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6198	0.0715	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	253JBV_URINARY_TRACT	1	1	0.6913	FALSE	462	80	0	856	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	IMMP2L--DOCK4	50	2	IMMP2L	1667	chr7:111201907:-	DOCK4	48299	chr7:111462512:-	ONLY_REF_SPLICE	YES	8	35	0.87	0.6	0.5959	0.0238	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	253JBV_URINARY_TRACT	0.6	0.87	0.6197	TRUE	0	0	0	2	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	GPR126--VTA1	38	21	GPR126	10409	chr6:142714137:+	VTA1	40534	chr6:142510563:+	ONLY_REF_SPLICE	YES	170	112	0.26	0.35	0.4529	0.2503	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	253JBV_URINARY_TRACT	0.26	0.35	0.7032	TRUE	0	0	0	2	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	MT-ND4--MT-ND4L	5	103	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	4730	1	0.02	0.99	0.0596	1.2276	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253JBV_URINARY_TRACT	0.02	0.99	1.2872	FALSE	344	827	44	306	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MT-TA--MT-TN	13	60	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.1549	0.7151	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253JBV_URINARY_TRACT	1	1	0.87	FALSE	369	2501	205	193	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MT-ND4--MT-ND4L	3	85	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	9	1	0.91	0.99	0.0358	1.0131	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253JBV_URINARY_TRACT	0.91	0.99	1.0489	FALSE	344	826	44	306	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MT-TA--MT-TN	10	55	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1192	0.6555	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253JBV_URINARY_TRACT	1	1	0.7747	FALSE	369	2501	205	193	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	ZNF654--HMGB2	22	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2622	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	253JBV_URINARY_TRACT	1	1	0.2622	TRUE	0	0	0	518	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MT-TA--MT-TN	14	19	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1669	0.2265	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253JBV_URINARY_TRACT	1	1	0.3934	FALSE	369	2501	205	193	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MT-TA--MT-TN	9	39	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1073	0.4648	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253JBV_URINARY_TRACT	1	1	0.5721	FALSE	369	2501	205	193	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	17	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.92	1	0.2026	0.0715	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	253JBV_URINARY_TRACT	0.92	1	0.2741	FALSE	515	4851	409	746	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	HSP90AB1--MT-RNR2	17	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2026	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	253JBV_URINARY_TRACT	1	1	0.2026	FALSE	13	9	0	364	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	14	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.1669	0.1073	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	253JBV_URINARY_TRACT	0.96	1	0.2742	FALSE	467	2173	244	435	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	XXbac-BPG248L24.12--SPP1	15	2	XXbac-BPG248L24.12	1474	chr6:31324897:+	SPP1	5039	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	3	0	0.85	1	0.1788	0.0238	XXbac-BPG248L24.12->chr6:31324424-31325414:+,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	253JBV_URINARY_TRACT	0.85	1	0.2026	TRUE	0	0	0	5	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	UBXN2A--NCOA1	12	8	UBXN2A	3440	chr2:24163518:+	NCOA1	31430	chr2:24914350:+	ONLY_REF_SPLICE	YES	31	12	0.39	0.62	0.143	0.0953	UBXN2A->UBX_domain_protein_2A,chr2:24150155-24227779:+,NCOA1->Oncogene{Bushman},chr2:24714783-24993571:+,nuclear_receptor_coactivator_1	253JBV_URINARY_TRACT	0.39	0.62	0.2383	TRUE	0	0	0	2	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	RP11-254I22.1--CTD-2337A12.1	13	2	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1549	0.0238	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	253JBV_URINARY_TRACT	0.94	1	0.1787	TRUE	6	15	3	35	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	HSP90AB1--MT-RNR2	13	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1549	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	253JBV_URINARY_TRACT	1	1	0.1549	FALSE	13	9	0	364	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MT-TA--MT-TN	3	38	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0.4529	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253JBV_URINARY_TRACT	1	1	0.4887	FALSE	369	2501	205	193	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MT-TA--MT-TN	3	38	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0.4529	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253JBV_URINARY_TRACT	1	1	0.4887	FALSE	369	2501	205	193	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	RP11-123O10.4--GRIP1	12	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.143	0.0119	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	253JBV_URINARY_TRACT	1	1	0.1549	FALSE	416	2512	207	587	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	CTD-2337A12.1--CAST	11	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	31	1	0.28	0.1311	0.0119	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	253JBV_URINARY_TRACT	0.28	1	0.143	TRUE	347	1186	183	220	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MT-TA--MT-TN	4	27	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0.3218	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253JBV_URINARY_TRACT	1	1	0.3695	FALSE	369	2501	205	193	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	PDE6B--PPP2R2D	10	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1192	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	253JBV_URINARY_TRACT	1	1	0.1192	TRUE	7	65	3	22	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MT-ND4--MT-ND4L	4	22	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	23	0	0.53	1	0.0477	0.2622	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253JBV_URINARY_TRACT	0.53	1	0.3099	FALSE	344	826	44	306	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1073	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	253JBV_URINARY_TRACT	1	1	0.1073	TRUE	0	0	0	434	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	RP11-120D5.1--MID1	8	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	110	0.59	0.08	0.0953	0.0238	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	253JBV_URINARY_TRACT	0.08	0.59	0.1191	FALSE	16	356	14	466	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MT-TA--MT-TN	8	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0953	0.0119	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253JBV_URINARY_TRACT	1	1	0.1072	FALSE	369	2501	205	193	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MT-TA--MT-TN	8	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0953	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253JBV_URINARY_TRACT	1	1	0.0953	FALSE	369	2501	205	193	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	ATRNL1--ATP6V0D2	6	7	ATRNL1	12798	chr10:116975638:+	ATP6V0D2	53691	chr8:87151686:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0715	0.0834	ATRNL1->attractin_like_1,chr10:116853124-117708503:+,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	253JBV_URINARY_TRACT	0.93	1	0.1549	TRUE	0	0	0	1	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	MT-ND4--MT-ND4L	4	15	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	24	0	0.44	1	0.0477	0.1788	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253JBV_URINARY_TRACT	0.44	1	0.2265	FALSE	344	826	44	306	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MT-TA--MT-TC	6	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0.0596	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	253JBV_URINARY_TRACT	1	1	0.1311	FALSE	462	80	0	856	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	PDE6B--PPP2R2D	7	0	PDE6B	1510	chr4:619882:+	PPP2R2D	25830	chr10:133753533:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	253JBV_URINARY_TRACT	1	1	0.0834	TRUE	5	45	2	9	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	WTAPP1--RUVBL1	7	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0834	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	253JBV_URINARY_TRACT	1	1	0.0834	TRUE	9	252	6	66	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	REV3L--RPL28	6	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	253JBV_URINARY_TRACT	1	1	0.0715	TRUE	22	156	2	142	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	RP11-254I22.1--CTD-2337A12.1	6	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0715	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	253JBV_URINARY_TRACT	1	1	0.0715	TRUE	4	2	0	28	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	RBPMS--SMIM18	5	3	RBPMS	1731	chr8:30242674:+	SMIM18	33527	chr8:30502027:+	INCL_NON_REF_SPLICE	YES	17	0	0.32	1	0.0596	0.0358	NEIGHBORS[66339],RBPMS->RNA_binding_protein_with_multiple_splicing,chr8:30241944-30429778:+,SMIM18->chr8:30496117-30503581:+,small_integral_membrane_protein_18	253JBV_URINARY_TRACT	0.32	1	0.0954	FALSE	0	0	0	2	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0596	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	253JBV_URINARY_TRACT	1	1	0.0596	FALSE	462	80	0	856	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	PCAT1--RP11-382A18.2	5	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0596	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	253JBV_URINARY_TRACT	1	1	0.0596	TRUE	4	84	1	46	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	RCC1--UBE2D2	5	0	RCC1	2175	chr1:28834672:+	UBE2D2	22302	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0596	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	253JBV_URINARY_TRACT	1	1	0.0596	TRUE	0	20	0	3	11	TRUE	ACH-000026
253JBV_URINARY_TRACT	SAMD5--SASH1	5	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0596	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	253JBV_URINARY_TRACT	1	1	0.0596	TRUE	53	396	64	110	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	AP000350.4--PKM	3	5	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	4	1	0.67	0.0358	0.0596	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	253JBV_URINARY_TRACT	0.67	1	0.0954	TRUE	0	0	0	14	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	RPSAP52--HMGA2	4	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	2	325	0.71	0.02	0.0477	0.0119	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	253JBV_URINARY_TRACT	0.02	0.71	0.0596	FALSE	0	59	0	125	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	FTH1--ACTB	4	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	253JBV_URINARY_TRACT	1	1	0.0477	TRUE	1	0	0	97	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MIR142--IGH@	4	0	MIR142	1039	chr17:56409831:-	IGH@	113632	chr14:106209407:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0	MIR142->chr17:56408245-56409869:-,microRNA_142,IGH@->Oncogene{Bushman}	253JBV_URINARY_TRACT	1	1	0.0477	TRUE	0	1	0	3	1	TRUE	ACH-000026
253JBV_URINARY_TRACT	MT-TA--MT-TN	4	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253JBV_URINARY_TRACT	1	1	0.0477	FALSE	369	2501	205	193	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	253JBV_URINARY_TRACT	1	1	0.0477	TRUE	0	0	0	434	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	RP11-120D5.1--MID1	3	3	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	8	110	0.43	0.05	0.0358	0.0358	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	253JBV_URINARY_TRACT	0.05	0.43	0.0716	FALSE	0	9	0	55	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	USP34--XPO1	1	10	USP34	1120	chr2:61697785:-	XPO1	85609	chr2:61729175:-	ONLY_REF_SPLICE	YES	10	207	0.52	0.05	0.0119	0.1192	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	253JBV_URINARY_TRACT	0.05	0.52	0.1311	TRUE	0	1	0	4	1	TRUE	ACH-000026
253JBV_URINARY_TRACT	EEF2--MT2A	3	1	EEF2	7125	chr19:3979343:-	MT2A	13651	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	3858	3	0	0.57	0.0358	0.0119	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	253JBV_URINARY_TRACT	0	0.57	0.0477	FALSE	0	0	0	6	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MTAP--CDKN2B-AS1	3	1	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	27457	chr9:22046750:+	ONLY_REF_SPLICE	YES	1	29	0.8	0.12	0.0358	0.0119	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	253JBV_URINARY_TRACT	0.12	0.8	0.0477	FALSE	0	3	0	6	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	RP11-120D5.1--MID1	3	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	14	110	0.22	0.04	0.0358	0.0119	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	253JBV_URINARY_TRACT	0.04	0.22	0.0477	FALSE	0	48	1	163	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	GPR126--VTA1	1	8	GPR126	10409	chr6:142714137:+	VTA1	41643	chr6:142519576:+	ONLY_REF_SPLICE	NO	170	100	0.05	0.08	0.0119	0.0953	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	253JBV_URINARY_TRACT	0.05	0.08	0.1072	TRUE	0	0	0	2	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	253JBV_URINARY_TRACT	1	1	0.0358	FALSE	183	104	9	328	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253JBV_URINARY_TRACT	1	1	0.0358	FALSE	344	821	44	306	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253JBV_URINARY_TRACT	1	1	0.0358	FALSE	369	2501	205	193	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	RCC1--RBCK1	3	0	RCC1	2175	chr1:28834672:+	RBCK1	23401	chr20:398170:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RBCK1->RANBP2-type_and_C3HC4-type_zinc_finger_containing_1,chr20:388142-411610:+	253JBV_URINARY_TRACT	1	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	RP11-254I22.1--CTD-2337A12.1	3	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	253JBV_URINARY_TRACT	1	1	0.0358	TRUE	0	2	1	13	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	ATRNL1--ATP6V0D2	1	7	ATRNL1	15040	chr10:117001514:+	ATP6V0D2	53691	chr8:87151686:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0119	0.0834	ATRNL1->attractin_like_1,chr10:116853124-117708503:+,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	253JBV_URINARY_TRACT	1	1	0.0953	TRUE	0	0	0	1	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	MTAP--CDKN2B-AS1	1	7	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	25710	chr9:22032673:+	ONLY_REF_SPLICE	NO	1	4	0.89	0.67	0.0119	0.0834	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	253JBV_URINARY_TRACT	0.67	0.89	0.0953	FALSE	0	0	0	2	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	RBPMS--SMIM18	2	3	RBPMS	1731	chr8:30242674:+	SMIM18	33509	chr8:30502009:+	ONLY_REF_SPLICE	YES	17	0	0.23	1	0.0238	0.0358	NEIGHBORS[66339],RBPMS->RNA_binding_protein_with_multiple_splicing,chr8:30241944-30429778:+,SMIM18->chr8:30496117-30503581:+,small_integral_membrane_protein_18	253JBV_URINARY_TRACT	0.23	1	0.0596	FALSE	0	0	0	2	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	RP11-254I22.1--CTD-2337A12.1	2	2	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	7741	chr5:95644428:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0238	0.0238	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	253JBV_URINARY_TRACT	0.8	1	0.0476	TRUE	1	1	0	7	1	FALSE	ACH-000026
253JBV_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.78	1	0.0119	0.0715	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	253JBV_URINARY_TRACT	0.78	1	0.0834	FALSE	407	2205	196	549	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	EXT1--SAMD12	2	0	EXT1	2769	chr8:119122324:-	SAMD12	25699	chr8:119452200:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:-:[77606],EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	253JBV_URINARY_TRACT	1	1	0.0238	TRUE	0	2	0	4	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	GPR126--VTA1	2	0	GPR126	5956	chr6:142691930:+	VTA1	41643	chr6:142519576:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	253JBV_URINARY_TRACT	1	1	0.0238	TRUE	0	0	0	3	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	GPR126--VTA1	2	0	GPR126	2987	chr6:142630781:+	VTA1	42986	chr6:142525122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	253JBV_URINARY_TRACT	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	KIF26B--C1orf101	2	0	KIF26B	2699	chr1:245319985:+	C1orf101	36739	chr1:244620795:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,C1orf101->chr1:244617679-244804479:+,chromosome_1_open_reading_frame_101	253JBV_URINARY_TRACT	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	PCNP--RMDN1	2	0	PCNP	1185	chr3:101293123:+	RMDN1	30136	chr8:87480936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	PCNP->PEST_proteolytic_signal_containing_nuclear_protein,chr3:101292939-101313281:+,RMDN1->chr8:87480486-87526586:-,regulator_of_microtubule_dynamics_1	253JBV_URINARY_TRACT	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	RP11-275N1.1--NEBL	2	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	253JBV_URINARY_TRACT	1	1	0.0238	TRUE	0	0	0	21	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	RP11-275N1.1--NEBL	2	0	RP11-275N1.1	3264	chr10:21657426:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	253JBV_URINARY_TRACT	1	1	0.0238	TRUE	0	0	0	3	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	RP11-275N1.1--NEBL	2	0	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	253JBV_URINARY_TRACT	1	1	0.0238	TRUE	0	2	0	25	2	FALSE	ACH-000026
253JBV_URINARY_TRACT	SF1--FUS	2	0	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	253JBV_URINARY_TRACT	1	1	0.0238	TRUE	5	20	0	32	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	NEGR1--PTGER3	1	2	NEGR1	9662	chr1:72058500:-	PTGER3	28535	chr1:71478167:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0119	0.0238	NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1,PTGER3->chr1:71318036-71513491:-,prostaglandin_E_receptor_3	253JBV_URINARY_TRACT	0.75	1	0.0357	TRUE	0	0	0	2	0	TRUE	ACH-000026
253JBV_URINARY_TRACT	RP11-254I22.1--CTD-2337A12.1	1	2	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0119	0.0238	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	253JBV_URINARY_TRACT	0.75	1	0.0357	TRUE	0	7	2	11	5	FALSE	ACH-000026
253JBV_URINARY_TRACT	CPSF6--CHMP1A	1	1	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	NO	117	172	0.02	0.01	0.0119	0.0119	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	253JBV_URINARY_TRACT	0.01	0.02	0.0238	FALSE	95	74	6	34	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	GNB2L1--NPM1	1	1	GNB2L1	7696	chr5:180666487:-	NPM1	16821	chr5:170818710:+	ONLY_REF_SPLICE	YES	5315	6122	0	0	0.0119	0.0119	GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	253JBV_URINARY_TRACT	0	0	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	14	57	0.12	0.03	0.0119	0.0119	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	253JBV_URINARY_TRACT	0.03	0.12	0.0238	FALSE	0	5	0	14	0	FALSE	ACH-000026
253JBV_URINARY_TRACT	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	34	0	0.06	1	0.0119	0.0119	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	253JBV_URINARY_TRACT	0.06	1	0.0238	FALSE	272	151	14	158	0	FALSE	ACH-000026
RT112_URINARY_TRACT	FGFR3--TACC3	1835	777	FGFR3	9864	chr4:1808661:+	TACC3	25583	chr4:1741429:+	ONLY_REF_SPLICE	YES	444	526	0.85	0.83	22.3329	9.4565	Cosmic{samples=250,mutations=14,papers=8},YOSHIHARA_TCGA_num_samples[BLCA:3|GBM:5|HNSC:2|LGG:1|LUSC:4],{Klijn_CCL:Liver=1,Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[48136],FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	RT112_URINARY_TRACT	0.83	0.85	31.7894	TRUE	0	28	0	1	25	TRUE	ACH-000473
RT112_URINARY_TRACT	FGFR3--TACC3	51	816	FGFR3	9894	chr4:1808691:+	TACC3	24077	chr4:1739923:+	INCL_NON_REF_SPLICE	YES	476	514	0.65	0.63	0.6207	9.9311	Cosmic{samples=250,mutations=14,papers=8},YOSHIHARA_TCGA_num_samples[BLCA:3|GBM:5|HNSC:2|LGG:1|LUSC:4],{Klijn_CCL:Liver=1,Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[48136],FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	RT112_URINARY_TRACT	0.63	0.65	10.5518	TRUE	0	5	0	1	5	TRUE	ACH-000473
RT112_URINARY_TRACT	FGFR3--TACC3	12	785	FGFR3	9864	chr4:1808661:+	TACC3	24229	chr4:1740075:+	INCL_NON_REF_SPLICE	YES	444	483	0.64	0.62	0.146	9.5539	Cosmic{samples=250,mutations=14,papers=8},YOSHIHARA_TCGA_num_samples[BLCA:3|GBM:5|HNSC:2|LGG:1|LUSC:4],{Klijn_CCL:Liver=1,Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[48136],FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	RT112_URINARY_TRACT	0.62	0.64	9.6999	TRUE	0	5	0	1	5	TRUE	ACH-000473
RT112_URINARY_TRACT	FGFR3--TACC3	10	303	FGFR3	9613	chr4:1808410:+	TACC3	25583	chr4:1741429:+	ONLY_REF_SPLICE	YES	435	526	0.42	0.37	0.1217	3.6877	Cosmic{samples=250,mutations=14,papers=8},YOSHIHARA_TCGA_num_samples[BLCA:3|GBM:5|HNSC:2|LGG:1|LUSC:4],{Klijn_CCL:Liver=1,Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[48136],FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	RT112_URINARY_TRACT	0.37	0.42	3.8094	TRUE	0	28	0	1	25	TRUE	ACH-000473
RT112_URINARY_TRACT	TIMM23B--LINC00843	77	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9371	0.2069	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RT112_URINARY_TRACT	1	1	1.144	TRUE	508	994	45	981	0	FALSE	ACH-000473
RT112_URINARY_TRACT	EWSR1--KRT13	59	0	EWSR1	21315	chr22:29695732:+	KRT13	25489	chr17:39661567:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7181	0	GTEx&tcga_normals:33/3694=0.89%,GTEx:0.54%,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,KRT13->chr17:39657233-39661957:-,keratin_13	RT112_URINARY_TRACT	1	1	0.7181	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	KANSL1--ARL17B	41	24	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	28	31	0.7	0.68	0.499	0.2921	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	RT112_URINARY_TRACT	0.68	0.7	0.7911	TRUE	181	1564	124	196	0	FALSE	ACH-000473
RT112_URINARY_TRACT	TIMM23--RP11-464F9.1	42	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5112	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RT112_URINARY_TRACT	1	1	0.5112	TRUE	519	3926	326	965	0	FALSE	ACH-000473
RT112_URINARY_TRACT	DHRS7B--ALDH3A1	39	0	DHRS7B	2421	chr17:21030304:+	ALDH3A1	26791	chr17:19641766:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4747	0	DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,ALDH3A1->aldehyde_dehydrogenase_3_family_member_A1,chr17:19641297-19652256:-	RT112_URINARY_TRACT	1	1	0.4747	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	MT-TA--MT-TC	35	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.426	0.0487	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RT112_URINARY_TRACT	1	1	0.4747	FALSE	462	80	0	856	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ND4L	7	109	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1	1	0.99	0.99	0.0852	1.3266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RT112_URINARY_TRACT	0.99	0.99	1.4118	FALSE	344	821	44	306	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ND4L	3	92	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.0365	1.1197	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RT112_URINARY_TRACT	0.97	1	1.1562	FALSE	344	826	44	306	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ND4L	3	82	MT-ND4	1131	chrM:10890:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	9	0	0.9	1	0.0365	0.998	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RT112_URINARY_TRACT	0.9	1	1.0345	FALSE	344	826	44	306	0	FALSE	ACH-000473
RT112_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	20	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.2434	0.0365	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RT112_URINARY_TRACT	0.96	1	0.2799	FALSE	515	4851	409	746	0	FALSE	ACH-000473
RT112_URINARY_TRACT	NRIP1--AF127936.7	17	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.81	1	0.2069	0.0487	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RT112_URINARY_TRACT	0.81	1	0.2556	FALSE	292	1546	117	613	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ND4L	3	59	MT-ND4	1144	chrM:10903:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	14	0	0.82	1	0.0365	0.7181	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RT112_URINARY_TRACT	0.82	1	0.7546	FALSE	344	826	44	306	0	FALSE	ACH-000473
RT112_URINARY_TRACT	NRIP1--AF127936.7	14	14	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	25	0	0.53	1	0.1704	0.1704	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RT112_URINARY_TRACT	0.53	1	0.3408	FALSE	164	806	69	479	0	FALSE	ACH-000473
RT112_URINARY_TRACT	TRAF2--EPB41L4B	14	12	TRAF2	11938	chr9:139804446:+	EPB41L4B	24170	chr9:112042201:-	ONLY_REF_SPLICE	YES	124	6	0.17	0.81	0.1704	0.146	{Klijn_CCL:Urinary_Bladder=1},TRAF2->TNF_receptor_associated_factor_2,chr9:139776364-139821059:+,EPB41L4B->chr9:111934255-112083244:-,erythrocyte_membrane_protein_band_4.1_like_4B	RT112_URINARY_TRACT	0.17	0.81	0.3164	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	WHSC1--GRK4	12	7	WHSC1	17937	chr4:1941505:+	GRK4	53593	chr4:2986240:+	ONLY_REF_SPLICE	YES	272	0	0.07	1	0.146	0.0852	{Klijn_CCL:Urinary_Bladder=1},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+	RT112_URINARY_TRACT	0.07	1	0.2312	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	NPM1P24--SET	13	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1582	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RT112_URINARY_TRACT	1	1	0.1582	TRUE	0	0	0	434	0	FALSE	ACH-000473
RT112_URINARY_TRACT	RP11-123O10.4--GRIP1	9	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1095	0.0243	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RT112_URINARY_TRACT	1	1	0.1338	FALSE	416	2512	207	587	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-TA--MT-TC	8	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0974	0.0609	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RT112_URINARY_TRACT	1	1	0.1583	FALSE	462	80	0	856	0	FALSE	ACH-000473
RT112_URINARY_TRACT	EWSR1--KRT13	9	0	EWSR1	21294	chr22:29695711:+	KRT13	25441	chr17:39661615:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1095	0	GTEx&tcga_normals:33/3694=0.89%,GTEx:0.54%,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,KRT13->chr17:39657233-39661957:-,keratin_13	RT112_URINARY_TRACT	1	1	0.1095	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	PFKL--MT-ND4L	7	6	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	959	0	0.01	1	0.0852	0.073	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RT112_URINARY_TRACT	0.01	1	0.1582	FALSE	0	0	0	33	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-CO2	7	2	MT-ND4	1496	chrM:11255:+	MT-CO2	5511	chrM:7718:+	INCL_NON_REF_SPLICE	YES	16130	5546	0	0	0.0852	0.0243	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RT112_URINARY_TRACT	0	0	0.1095	FALSE	5	1	0	19	0	FALSE	ACH-000473
RT112_URINARY_TRACT	NRIP1--AF127936.7	6	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.43	1	0.073	0.073	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RT112_URINARY_TRACT	0.43	1	0.146	FALSE	125	705	46	456	0	FALSE	ACH-000473
RT112_URINARY_TRACT	WHSC1--GRK4	7	2	WHSC1	15609	chr4:1936989:+	GRK4	55802	chr4:2993942:+	ONLY_REF_SPLICE	YES	170	4	0.05	0.69	0.0852	0.0243	{Klijn_CCL:Urinary_Bladder=1},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+	RT112_URINARY_TRACT	0.05	0.69	0.1095	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-CO2	7	1	MT-ND4	1209	chrM:10968:+	MT-CO2	5522	chrM:7729:+	INCL_NON_REF_SPLICE	NO	12443	6979	0	0	0.0852	0.0122	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RT112_URINARY_TRACT	0	0	0.0974	FALSE	5	1	0	19	0	FALSE	ACH-000473
RT112_URINARY_TRACT	SLC1A5--MT-ND4L	7	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	594	0	0.01	1	0.0852	0.0122	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RT112_URINARY_TRACT	0.01	1	0.0974	FALSE	0	0	0	189	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ND4L	3	15	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	24	0	0.43	1	0.0365	0.1826	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RT112_URINARY_TRACT	0.43	1	0.2191	FALSE	344	826	44	306	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ND4L	3	15	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	704	0	0.02	1	0.0365	0.1826	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RT112_URINARY_TRACT	0.02	1	0.2191	FALSE	344	827	44	306	0	FALSE	ACH-000473
RT112_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	6	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.073	0.0365	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RT112_URINARY_TRACT	1	1	0.1095	FALSE	467	2173	244	435	0	FALSE	ACH-000473
RT112_URINARY_TRACT	WHSC1--GRK4	5	7	WHSC1	20724	chr4:1944292:+	GRK4	53593	chr4:2986240:+	ONLY_REF_SPLICE	YES	253	0	0.05	1	0.0609	0.0852	{Klijn_CCL:Urinary_Bladder=1},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+	RT112_URINARY_TRACT	0.05	1	0.1461	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	EWSR1--KRT13	6	0	EWSR1	21315	chr22:29695732:+	KRT13	25453	chr17:39661603:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0	GTEx&tcga_normals:33/3694=0.89%,GTEx:0.54%,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,KRT13->chr17:39657233-39661957:-,keratin_13	RT112_URINARY_TRACT	1	1	0.073	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RT112_URINARY_TRACT	1	1	0.073	FALSE	499	1288	110	792	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ATP8	5	3	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2369	43	0	0.16	0.0609	0.0365	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT112_URINARY_TRACT	0	0.16	0.0974	FALSE	216	209	16	281	0	FALSE	ACH-000473
RT112_URINARY_TRACT	WHSC1--NOP14-AS1	5	2	WHSC1	17937	chr4:1941505:+	NOP14-AS1	58397	chr4:2963081:+	ONLY_REF_SPLICE	YES	272	0	0.03	1	0.0609	0.0243	WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,NOP14-AS1->NOP14_antisense_RNA_1,chr4:2936626-2963465:+	RT112_URINARY_TRACT	0.03	1	0.0852	TRUE	0	0	0	1	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ATP8	5	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15601	3	0	0.67	0.0609	0.0122	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT112_URINARY_TRACT	0	0.67	0.0731	FALSE	231	217	16	283	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ATP8	5	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT112_URINARY_TRACT	1	1	0.0609	FALSE	231	205	14	283	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND6--MT-TE	4	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.0487	0.0487	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RT112_URINARY_TRACT	0.73	1	0.0974	FALSE	499	1288	110	792	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND6--MT-TE	5	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RT112_URINARY_TRACT	1	1	0.0609	FALSE	499	1288	110	792	0	FALSE	ACH-000473
RT112_URINARY_TRACT	WHSC1--GRK4	4	4	WHSC1	17937	chr4:1941505:+	GRK4	55802	chr4:2993942:+	ONLY_REF_SPLICE	YES	272	4	0.03	0.67	0.0487	0.0487	{Klijn_CCL:Urinary_Bladder=1},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+	RT112_URINARY_TRACT	0.03	0.67	0.0974	TRUE	0	0	0	1	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND6--MT-TE	4	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0.0243	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RT112_URINARY_TRACT	1	1	0.073	FALSE	499	1288	110	792	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-TA--MT-TC	3	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0.073	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RT112_URINARY_TRACT	1	1	0.1095	FALSE	462	80	0	856	0	FALSE	ACH-000473
RT112_URINARY_TRACT	RP11-114H23.1--RP11-114H23.2	3	6	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0365	0.073	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	RT112_URINARY_TRACT	1	1	0.1095	FALSE	81	155	12	160	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ATP6--MT-CO1	4	1	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	10776	18671	0	0	0.0487	0.0122	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RT112_URINARY_TRACT	0	0	0.0609	FALSE	183	104	9	328	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	10534	18146	0	0	0.0487	0.0122	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RT112_URINARY_TRACT	0	0	0.0609	FALSE	183	104	9	328	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ATP6--MT-CO1	4	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12796	20287	0	0	0.0487	0.0122	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RT112_URINARY_TRACT	0	0	0.0609	FALSE	183	104	9	328	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ND4L	4	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0487	0.0122	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RT112_URINARY_TRACT	0.83	1	0.0609	FALSE	344	821	44	306	0	FALSE	ACH-000473
RT112_URINARY_TRACT	EWSR1--KRT13	4	0	EWSR1	21294	chr22:29695711:+	KRT13	25477	chr17:39661579:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	GTEx&tcga_normals:33/3694=0.89%,GTEx:0.54%,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,KRT13->chr17:39657233-39661957:-,keratin_13	RT112_URINARY_TRACT	1	1	0.0487	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	EWSR1--KRT13	4	0	EWSR1	21282	chr22:29695699:+	KRT13	25489	chr17:39661567:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	GTEx&tcga_normals:33/3694=0.89%,GTEx:0.54%,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,KRT13->chr17:39657233-39661957:-,keratin_13	RT112_URINARY_TRACT	1	1	0.0487	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	MT-ATP6--MT-CO1	3	4	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	11565	0	0	1	0.0365	0.0487	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RT112_URINARY_TRACT	0	1	0.0852	FALSE	182	97	9	327	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ATP8	4	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT112_URINARY_TRACT	1	1	0.0487	FALSE	231	204	14	283	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RT112_URINARY_TRACT	1	1	0.0487	FALSE	344	821	44	306	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-TA--MT-TC	3	4	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0.0487	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RT112_URINARY_TRACT	1	1	0.0852	FALSE	462	80	0	856	0	FALSE	ACH-000473
RT112_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.88	1	0.0365	0.0487	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RT112_URINARY_TRACT	0.88	1	0.0852	FALSE	407	2205	196	549	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ATP8	3	3	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	13826	173	0	0.03	0.0365	0.0365	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT112_URINARY_TRACT	0	0.03	0.073	FALSE	231	217	16	283	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ATP6--MT-CO1	3	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	12144	18853	0	0	0.0365	0.0243	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RT112_URINARY_TRACT	0	0	0.0608	FALSE	183	104	9	328	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	14990	807	0	0.01	0.0365	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT112_URINARY_TRACT	0	0.01	0.0608	FALSE	231	217	16	283	0	FALSE	ACH-000473
RT112_URINARY_TRACT	RP11-120D5.1--MID1	3	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	97	0.71	0.05	0.0365	0.0243	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RT112_URINARY_TRACT	0.05	0.71	0.0608	FALSE	16	356	14	466	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ATP6--MT-CO1	3	1	MT-ATP6	1113	chrM:8639:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	10218	18059	0	0	0.0365	0.0122	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RT112_URINARY_TRACT	0	0	0.0487	FALSE	183	104	9	328	0	FALSE	ACH-000473
RT112_URINARY_TRACT	RP11-319G9.5--WWOX	3	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	32	1	0.11	0.0365	0.0122	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	RT112_URINARY_TRACT	0.11	1	0.0487	FALSE	154	425	28	76	0	FALSE	ACH-000473
RT112_URINARY_TRACT	TRAF2--EPB41L4B	1	9	TRAF2	10863	chr9:139802683:+	EPB41L4B	24170	chr9:112042201:-	ONLY_REF_SPLICE	YES	130	6	0.07	0.62	0.0122	0.1095	{Klijn_CCL:Urinary_Bladder=1},TRAF2->TNF_receptor_associated_factor_2,chr9:139776364-139821059:+,EPB41L4B->chr9:111934255-112083244:-,erythrocyte_membrane_protein_band_4.1_like_4B	RT112_URINARY_TRACT	0.07	0.62	0.1217	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	EWSR1--KRT13	3	0	EWSR1	21219	chr22:29695636:+	KRT13	25477	chr17:39661579:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	GTEx&tcga_normals:33/3694=0.89%,GTEx:0.54%,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,KRT13->chr17:39657233-39661957:-,keratin_13	RT112_URINARY_TRACT	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	EWSR1--KRT13	3	0	EWSR1	21261	chr22:29695678:+	KRT13	25477	chr17:39661579:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	GTEx&tcga_normals:33/3694=0.89%,GTEx:0.54%,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,KRT13->chr17:39657233-39661957:-,keratin_13	RT112_URINARY_TRACT	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	KANSL1--ARL17B	1	8	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	37	31	0.2	0.23	0.0122	0.0974	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	RT112_URINARY_TRACT	0.2	0.23	0.1096	TRUE	105	90	7	93	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RT112_URINARY_TRACT	1	1	0.0365	FALSE	183	104	9	328	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ATP8	3	0	MT-ND4	1453	chrM:11212:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT112_URINARY_TRACT	1	1	0.0365	FALSE	231	217	16	283	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ATP8	3	0	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT112_URINARY_TRACT	1	1	0.0365	FALSE	231	217	16	283	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ATP8	3	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RT112_URINARY_TRACT	1	1	0.0365	FALSE	231	205	14	283	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RT112_URINARY_TRACT	1	1	0.0365	FALSE	344	821	44	306	0	FALSE	ACH-000473
RT112_URINARY_TRACT	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RT112_URINARY_TRACT	1	1	0.0365	FALSE	462	80	0	856	0	FALSE	ACH-000473
RT112_URINARY_TRACT	PIGT--MT-CO3	3	0	PIGT	1184	chr20:44044900:+	MT-CO3	11739	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	PIGT->chr20:44044717-44054884:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_T,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	RT112_URINARY_TRACT	1	1	0.0365	FALSE	0	0	0	5	0	FALSE	ACH-000473
RT112_URINARY_TRACT	SHMT1--RP1-178F10.1	3	0	SHMT1	2694	chr17:18263728:-	RP1-178F10.1	20245	chr17:18171445:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0365	0	LOCAL_INVERSION:-:+:[59045],SHMT1->chr17:18231187-18266856:-,serine_hydroxymethyltransferase_1,RP1-178F10.1->chr17:18171394-18172142:+	RT112_URINARY_TRACT	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	KLHL18--RP11-314M24.1	2	1	KLHL18	1178	chr3:47324584:+	RP11-314M24.1	22918	chr3:78329644:+	ONLY_REF_SPLICE	YES	40	0	0.07	1	0.0243	0.0122	KLHL18->chr3:47324407-47388306:+,kelch_like_family_member_18,RP11-314M24.1->chr3:78316090-78343881:+	RT112_URINARY_TRACT	0.07	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	RP11-357C3.3--ARHGEF9	2	1	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	22895	chrX:62926329:-	ONLY_REF_SPLICE	YES	30	13	0.09	0.19	0.0243	0.0122	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	RT112_URINARY_TRACT	0.09	0.19	0.0365	TRUE	0	3	0	3	0	TRUE	ACH-000473
RT112_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0122	0.0609	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RT112_URINARY_TRACT	0.86	1	0.0731	FALSE	275	511	55	178	0	FALSE	ACH-000473
RT112_URINARY_TRACT	C17orf76-AS1--EIF4A1	2	0	C17orf76-AS1	1593	chr17:16342728:+	EIF4A1	15616	chr17:7478437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	C17orf76-AS1->chr17:16342136-16381992:+,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	RT112_URINARY_TRACT	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	DHRS7B--ALDH3A1	2	0	DHRS7B	2421	chr17:21030304:+	ALDH3A1	26149	chr17:19642408:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,ALDH3A1->aldehyde_dehydrogenase_3_family_member_A1,chr17:19641297-19652256:-	RT112_URINARY_TRACT	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	HIF1A--MNAT1	2	0	HIF1A	1327	chr14:62162557:+	MNAT1	31452	chr14:61346432:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+	RT112_URINARY_TRACT	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000473
RT112_URINARY_TRACT	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RT112_URINARY_TRACT	1	1	0.0243	FALSE	25	145	6	90	0	FALSE	ACH-000473
RT112_URINARY_TRACT	PTPRK--ECHDC1	2	0	PTPRK	1467	chr6:128841404:-	ECHDC1	57086	chr6:127652175:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,ECHDC1->chr6:127609855-127664754:-,ethylmalonyl-CoA_decarboxylase_1	RT112_URINARY_TRACT	1	1	0.0243	TRUE	0	1	0	1	1	TRUE	ACH-000473
RT112_URINARY_TRACT	WHSC1--GRK4	1	4	WHSC1	17937	chr4:1941505:+	GRK4	54689	chr4:2990454:+	ONLY_REF_SPLICE	YES	272	1	0.02	0.83	0.0122	0.0487	{Klijn_CCL:Urinary_Bladder=1},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+	RT112_URINARY_TRACT	0.02	0.83	0.0609	TRUE	0	0	0	1	0	FALSE	ACH-000473
RT112_URINARY_TRACT	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0122	0.0243	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RT112_URINARY_TRACT	1	1	0.0365	FALSE	93	270	15	244	0	FALSE	ACH-000473
RT112_URINARY_TRACT	SHMT1--ALDH3A1	1	2	SHMT1	2694	chr17:18263728:-	ALDH3A1	28500	chr17:19642408:-	ONLY_REF_SPLICE	YES	265	47	0.01	0.06	0.0122	0.0243	SHMT1->chr17:18231187-18266856:-,serine_hydroxymethyltransferase_1,ALDH3A1->aldehyde_dehydrogenase_3_family_member_A1,chr17:19641297-19652256:-	RT112_URINARY_TRACT	0.01	0.06	0.0365	FALSE	0	0	0	1	0	FALSE	ACH-000473
RT112_URINARY_TRACT	AC002066.1--AC073130.1	1	1	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0122	0.0122	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	RT112_URINARY_TRACT	1	1	0.0244	FALSE	0	1	1	30	0	FALSE	ACH-000473
RT112_URINARY_TRACT	AFF1--PTPN13	1	1	AFF1	3385	chr4:87869723:+	PTPN13	83980	chr4:87735609:+	ONLY_REF_SPLICE	YES	8	69	0.2	0.03	0.0122	0.0122	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BLCA:2|LUAD:1|LUSC:1],AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,PTPN13->Oncogene{Bushman},chr4:87515468-87736324:+,protein_tyrosine_phosphatase,_non-receptor_type_13	RT112_URINARY_TRACT	0.03	0.2	0.0244	TRUE	0	0	0	1	0	FALSE	ACH-000473
RT112_URINARY_TRACT	GMDS-AS1--GMDS	1	1	GMDS-AS1	3357	chr6:2263918:+	GMDS	34514	chr6:2124965:-	ONLY_REF_SPLICE	YES	10	63	0.17	0.03	0.0122	0.0122	GTEx_FI:{Salivary_Gland=[count:2=pct:5.1],Thyroid=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},LOCAL_INVERSION:+:-:[56],GMDS-AS1->GMDS_antisense_RNA_1_(head_to_head),chr6:2245982-2482256:+,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	RT112_URINARY_TRACT	0.03	0.17	0.0244	TRUE	2	2	2	3	0	FALSE	ACH-000473
RT112_URINARY_TRACT	KDM1A--CAPZB	1	1	KDM1A	1500	chr1:23346440:+	CAPZB	30238	chr1:19746244:-	ONLY_REF_SPLICE	YES	170	81	0.01	0.02	0.0122	0.0122	KDM1A->chr1:23345941-23410182:+,lysine_demethylase_1A,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	RT112_URINARY_TRACT	0.01	0.02	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000473
RT112_URINARY_TRACT	LDLRAD3--TRIM44	1	1	LDLRAD3	5673	chr11:36120011:+	TRIM44	24003	chr11:35827908:+	ONLY_REF_SPLICE	YES	15	120	0.12	0.02	0.0122	0.0122	YOSHIHARA_TCGA_num_samples[LUAD:1|SKCM:1],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,TRIM44->chr11:35684353-35829775:+,tripartite_motif_containing_44	RT112_URINARY_TRACT	0.02	0.12	0.0244	TRUE	0	2	0	1	1	FALSE	ACH-000473
RT112_URINARY_TRACT	RNF152--RP11-879F14.1	1	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0122	0.0122	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	RT112_URINARY_TRACT	0.4	1	0.0244	FALSE	275	472	65	43	0	FALSE	ACH-000473
RT112_URINARY_TRACT	WHSC1--GRK4	1	1	WHSC1	15609	chr4:1936989:+	GRK4	57984	chr4:3009463:+	ONLY_REF_SPLICE	YES	170	9	0.01	0.18	0.0122	0.0122	{Klijn_CCL:Urinary_Bladder=1},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+	RT112_URINARY_TRACT	0.01	0.18	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000473
RT112_URINARY_TRACT	WHSC1--NOP14-AS1	1	1	WHSC1	15609	chr4:1936989:+	NOP14-AS1	58397	chr4:2963081:+	ONLY_REF_SPLICE	YES	170	0	0.01	1	0.0122	0.0122	WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,NOP14-AS1->NOP14_antisense_RNA_1,chr4:2936626-2963465:+	RT112_URINARY_TRACT	0.01	1	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000473
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	195	43	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	2	0	0.99	1	2.2188	0.4893	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	2.7081	TRUE	0	0	0	25	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	158	120	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	107	73	0.72	0.79	1.7978	1.3654	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	0.79	3.1632	TRUE	181	1564	124	196	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--DAZAP1	133	1	IGL@	66067	chr22:23248960:+	DAZAP1	91286	chr19:1434434:+	INCL_NON_REF_SPLICE	NO	411	326	0.25	0.29	1.5133	0.0114	IGL@->Oncogene{Bushman},DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.29	1.5247	TRUE	0	0	0	1	0	TRUE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--DAZAP1	82	1	IGL@	63429	chr22:23243604:+	DAZAP1	91286	chr19:1434434:+	INCL_NON_REF_SPLICE	NO	11838	326	0.01	0.2	0.933	0.0114	IGL@->Oncogene{Bushman},DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.2	0.9444	FALSE	0	0	0	1	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	59	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.6713	0.2731	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	0.9444	TRUE	508	994	45	981	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SENP6--PDK1	52	32	SENP6	16830	chr6:76380436:+	PDK1	47175	chr2:173451006:+	ONLY_REF_SPLICE	YES	92	24	0.48	0.78	0.5917	0.3641	{Klijn_CCL:Lymphoid=1},SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+,PDK1->ArcherDX_panel,FoundationOne_panel,chr2:173420101-173489823:+,pyruvate_dehydrogenase_kinase_1	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.78	0.9558	TRUE	0	0	0	1	0	TRUE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	38	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	260	10	0.14	0.8	0.4324	0.0341	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.8	0.4665	TRUE	519	3926	326	965	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	33	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3755	0.0228	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3983	FALSE	462	80	0	856	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--DAZAP1	28	1	IGL@	36676	chr22:23040905:+	DAZAP1	90350	chr19:1433498:+	INCL_NON_REF_SPLICE	NO	8424	319	0	0.08	0.3186	0.0114	IGL@->Oncogene{Bushman},DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.33	FALSE	0	0	0	1	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	13	56	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	5	0	0.93	1	0.1479	0.6372	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.7851	TRUE	1	1	0	28	1	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	21	17	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	132	23	0.22	0.62	0.2389	0.1934	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.62	0.4323	TRUE	267	562	48	632	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	8	44	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	7	0	0.88	1	0.091	0.5007	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.5917	TRUE	0	0	0	12	0	TRUE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXDC1--TAF13	16	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1821	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1821	TRUE	7	10	0	216	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	11	13	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	129	24	0.16	0.5	0.1252	0.1479	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.5	0.2731	TRUE	267	562	48	632	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1479	0.0114	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1593	FALSE	499	1288	110	792	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	7	18	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	2	3	0.93	0.89	0.0796	0.2048	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.93	0.2844	TRUE	0	0	0	16	0	TRUE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	8	10	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	2	31	0.9	0.37	0.091	0.1138	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.9	0.2048	TRUE	0	0	0	13	0	TRUE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	9	5	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	7	0	0.67	1	0.1024	0.0569	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.1593	TRUE	0	1	0	84	1	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	8	5	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	5	0	0.72	1	0.091	0.0569	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	1	0.1479	TRUE	0	1	0	84	1	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUSC1-AS1--IGL@	9	1	RUSC1-AS1	7196	chr1:155286726:-	IGL@	73849	chr22:23247168:+	INCL_NON_REF_SPLICE	YES	0	10793	1	0	0.1024	0.0114	RUSC1-AS1->RUSC1_antisense_RNA_1,chr1:155286654-155293967:-,IGL@->Oncogene{Bushman}	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1138	TRUE	0	0	0	1	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.091	0.0341	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.1251	FALSE	499	1288	110	792	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	8	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.091	0.0341	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	0.1251	FALSE	515	4851	409	746	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	7	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.0796	0.0683	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.1479	FALSE	407	2205	196	549	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0796	0.0228	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1024	FALSE	462	80	0	856	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C10orf112--PLXDC2	6	5	C10orf112	32754	chr10:20079115:+	PLXDC2	37923	chr10:20290704:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0683	0.0569	NEIGHBORS[25838],C10orf112->chr10:19492779-20079330:+,PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1252	FALSE	73	74	3	10	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	6	3	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0683	0.0341	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.1024	TRUE	0	48	0	65	48	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	5	6	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	9	0	0.55	1	0.0569	0.0683	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.1252	TRUE	0	1	0	84	1	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	4	8	AC104820.2	16783	chr2:182227645:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	0	222	1	0.05	0.0455	0.091	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.1365	FALSE	0	0	0	16	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	6	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0683	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0683	TRUE	0	0	0	81	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	5	3	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0569	0.0341	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.091	TRUE	0	35	0	55	35	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	1	16	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	5	31	0.77	0.35	0.0114	0.1821	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.77	0.1935	TRUE	0	0	0	13	0	TRUE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	4	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0455	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0455	TRUE	0	16	0	53	13	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0455	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0455	FALSE	499	1288	110	792	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0455	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0455	FALSE	462	80	0	856	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0.0228	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0569	FALSE	462	80	0	856	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFE2L1--IGL@	3	2	NFE2L1	10939	chr17:46137774:+	IGL@	50522	chr22:23040737:+	INCL_NON_REF_SPLICE	NO	1237	8563	0	0	0.0341	0.0228	NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,IGL@->Oncogene{Bushman}	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0569	FALSE	0	0	0	1	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCNL2--SSU72	3	1	CCNL2	10675	chr1:1322615:-	SSU72	16592	chr1:1500296:-	INCL_NON_REF_SPLICE	YES	612	617	0.01	0.01	0.0341	0.0114	CCNL2->chr1:1321091-1334708:-,cyclin_L2,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0455	FALSE	0	0	0	1	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0.0114	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0455	FALSE	499	1288	110	792	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0341	TRUE	0	0	0	81	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	3	0	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0341	FALSE	59	21	0	114	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFE2L1--IGL@	3	0	NFE2L1	3483	chr17:46128619:+	IGL@	50398	chr22:23040613:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,IGL@->Oncogene{Bushman}	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZCCHC11--ARIH2	3	0	ZCCHC11	42910	chr1:52875156:-	ARIH2	52844	chr3:48964895:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	GTEx_FI:{Muscle=[count:6=pct:2.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},ZCCHC11->chr1:52873954-53019159:-,zinc_finger_CCHC-type_containing_11,ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0341	TRUE	9	30	5	4	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	3	0	0.73	1	0.0114	0.0796	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	0.091	FALSE	275	511	55	178	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXO1--LINC00598	2	1	FOXO1	2015	chr13:41239720:-	LINC00598	13384	chr13:41048232:-	ONLY_REF_SPLICE	YES	38	0	0.07	1	0.0228	0.0114	NEIGHBORS[74661],FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,LINC00598->chr13:41025131-41055143:-,long_intergenic_non-protein_coding_RNA_598	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0342	FALSE	0	0	1	4	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXO1--LINC00598	2	0	FOXO1	2015	chr13:41239720:-	LINC00598	16798	chr13:41034543:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	NEIGHBORS[74661],FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,LINC00598->chr13:41025131-41055143:-,long_intergenic_non-protein_coding_RNA_598	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	FALSE	8	15	1	11	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTERFD1--TCEA1	2	0	MTERFD1	1110	chr8:97273729:-	TCEA1	20359	chr8:54900819:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	MTERFD1->chr8:97251626-97273838:-,TCEA1->Oncogene{Bushman},chr8:54879112-54935089:-,transcription_elongation_factor_A1	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SHROOM3--KIAA1551	2	0	SHROOM3	2121	chr4:77357373:+	KIAA1551	44698	chr12:32145312:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3,KIAA1551->KIAA1551,chr12:32112304-32146039:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFA4--PHF14	1	2	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	1590	30	0	0.09	0.0114	0.0228	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0342	FALSE	19	32	3	60	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	1	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	0	393	1	0.01	0.0114	0.0114	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0228	FALSE	0	0	0	19	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGFR2--COL14A1	1	1	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	0	4	1	0.33	0.0114	0.0114	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.0228	TRUE	0	0	0	32	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	1	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0114	0.0114	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	FALSE	0	24	0	62	0	FALSE	ACH-000183
L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1L12.3--SLC5A12	1	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0114	0.0114	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	3	101	0	60	0	FALSE	ACH-000183
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAMK2G--KCNJ10	95	27	CAMK2G	5650	chr10:75612012:-	KCNJ10	29262	chr1:160012322:-	ONLY_REF_SPLICE	YES	43	0	0.74	1	1.1383	0.3235	CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-,KCNJ10->chr1:160007257-160040038:-,potassium_voltage-gated_channel_subfamily_J_member_10	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	1.4618	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	77	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9226	0.2157	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1383	TRUE	508	994	45	981	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	57	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.683	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.683	TRUE	0	0	0	518	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	46	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	97	8	0.34	0.86	0.5512	0.0359	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.86	0.5871	TRUE	519	3926	326	965	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	26	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3115	0.0359	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3474	FALSE	416	2512	207	587	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KRIT1--IGSF3	16	15	KRIT1	2265	chr7:91874216:-	IGSF3	26420	chr1:117159079:-	ONLY_REF_SPLICE	YES	56	0	0.36	1	0.1917	0.1797	KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.3714	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAMK2G--KCNJ10	16	13	CAMK2G	3657	chr10:75620588:-	KCNJ10	29262	chr1:160012322:-	ONLY_REF_SPLICE	YES	28	0	0.51	1	0.1917	0.1558	CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-,KCNJ10->chr1:160007257-160040038:-,potassium_voltage-gated_channel_subfamily_J_member_10	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	1	0.3475	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	17	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2037	0.0359	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2396	FALSE	462	80	0	856	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1558	0.0599	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2157	FALSE	499	1288	110	792	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KRIT1--IGSF3	12	8	KRIT1	1740	chr7:91874741:-	IGSF3	26420	chr1:117159079:-	ONLY_REF_SPLICE	YES	46	0	0.3	1	0.1438	0.0959	KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.2397	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	14	0	ZNF654	1688	chr3:88188941:+	HMGB2	12525	chr4:174253314:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1677	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1677	TRUE	0	0	0	518	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAMK2G--KCNJ10	8	19	CAMK2G	4712	chr10:75612950:-	KCNJ10	29262	chr1:160012322:-	ONLY_REF_SPLICE	YES	49	0	0.36	1	0.0959	0.2277	CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-,KCNJ10->chr1:160007257-160040038:-,potassium_voltage-gated_channel_subfamily_J_member_10	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.3236	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	9	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	58	15	0.19	0.48	0.1078	0.0599	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.48	0.1677	TRUE	267	562	48	632	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPG11--MRPL52	10	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1198	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1198	TRUE	38	11	0	19	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0839	0.1318	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.2157	FALSE	499	1288	110	792	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-128A17.1--WDR72	9	1	RP11-128A17.1	1091	chr15:37391630:+	WDR72	23812	chr15:53908440:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1078	0.012	RP11-128A17.1->chr15:37391540-37392374:+,WDR72->WD_repeat_domain_72,chr15:53805938-54055075:-	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1198	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1078	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1078	TRUE	0	0	0	434	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AGPAT4--PARK2	8	2	AGPAT4	2391	chr6:161653068:-	PARK2	26181	chr6:162475206:-	ONLY_REF_SPLICE	YES	10	0	0.5	1	0.0959	0.024	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[73359],AGPAT4->1-acylglycerol-3-phosphate_O-acyltransferase_4,chr6:161551011-161695093:-,PARK2->ArcherDX_panel,FoundationOne_panel,chr6:161768452-163148803:-,parkin_RBR_E3_ubiquitin_protein_ligase	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.1199	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0.1078	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1797	FALSE	499	1288	110	792	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0959	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0959	FALSE	13	9	0	364	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ITGB3BP	8	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0959	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0959	TRUE	0	6	0	9	2	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-128A17.1--WDR72	7	3	RP11-128A17.1	1629	chr15:37392168:+	WDR72	23812	chr15:53908440:-	INCL_NON_REF_SPLICE	YES	11	0	0.48	1	0.0839	0.0359	RP11-128A17.1->chr15:37391540-37392374:+,WDR72->WD_repeat_domain_72,chr15:53805938-54055075:-	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	0.1198	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	6	5	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0.0599	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1318	TRUE	0	1	0	84	1	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0.0599	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1318	FALSE	499	1288	110	792	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	7	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0839	0.012	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0959	FALSE	292	1546	117	613	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0839	FALSE	13	9	0	364	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ENO1--EEF2	6	0	ENO1	11548	chr1:8923321:-	EEF2	24932	chr19:3976731:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0719	TRUE	0	0	0	9	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	11	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0.1318	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1677	FALSE	499	1288	110	792	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KRIT1--IGSF3	5	1	KRIT1	1377	chr7:91875104:-	IGSF3	26420	chr1:117159079:-	ONLY_REF_SPLICE	YES	17	0	0.26	1	0.0599	0.012	KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.0719	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	4	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.23	1	0.0479	0.012	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.0599	FALSE	164	806	69	479	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KRIT1--IGSF3	3	1	KRIT1	1261	chr7:91875220:-	IGSF3	26420	chr1:117159079:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0359	0.012	KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.0479	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDF4--GNAS	3	1	SDF4	5392	chr1:1158624:-	GNAS	29673	chr20:57470667:+	ONLY_REF_SPLICE	YES	282	517	0.01	0.01	0.0359	0.012	GTEx&tcga_normals:1/3694=0.03%,SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0479	FALSE	0	0	0	2	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0359	FALSE	499	1288	110	792	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1029	chrM:5627:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0359	FALSE	462	80	0	856	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0359	TRUE	22	156	2	142	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B2M--HNRNPUL1	2	0	B2M	1137	chr15:45003811:+	HNRNPUL1	13595	chr19:41774128:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,HNRNPUL1->chr19:41768401-41813503:+,heterogeneous_nuclear_ribonucleoprotein_U_like_1	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	3	0	0	2	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--USP46-AS1	2	0	CPSF6	11046	chr12:69656342:+	USP46-AS1	21165	chr4:53527059:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,USP46-AS1->USP46_antisense_RNA_1,chr4:53525573-53527835:+	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	347	1186	183	220	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDFIP1--CSNK1D	2	0	NDFIP1	6316	chr5:141517423:+	CSNK1D	24855	chr17:80211120:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	NDFIP1->Nedd4_family_interacting_protein_1,chr5:141488070-141534005:+,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--SRSF1	2	0	PROSC	2996	chr8:37623873:+	SRSF1	14701	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Breast=[count:2=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=3,Brain_-_Hippocampus=1,Thyroid=1,Adipose_-_Subcutaneous=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	6	2	0	9	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLCO4A1--L3MBTL3	2	0	SLCO4A1	1109	chr20:61273905:+	L3MBTL3	23420	chr6:130343372:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,L3MBTL3->chr6:130334844-130462594:+,l(3)mbt-like_3_(Drosophila)	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPPL2B--SF3A2	2	0	SPPL2B	1161	chr19:2328774:+	SF3A2	22392	chr19:2243381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	LOCAL_REARRANGEMENT:+:[79936],SPPL2B->Oncogene{Bushman},chr19:2328614-2355099:+,signal_peptide_peptidase_like_2B,SF3A2->chr19:2236520-2248678:+,splicing_factor_3a_subunit_2	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ACAP1	1	2	RCC1	2920	chr1:28835417:+	ACAP1	22150	chr17:7246698:+	ONLY_REF_SPLICE	YES	28	102	0.1	0.03	0.012	0.024	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ACAP1->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_1,Oncogene{Bushman},chr17:7239848-7254797:+	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.1	0.036	TRUE	0	0	0	3	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--ITGB3BP	1	1	C17orf76-AS1	1593	chr17:16342728:+	ITGB3BP	24528	chr1:63920639:-	ONLY_REF_SPLICE	YES	82	71	0.02	0.03	0.012	0.012	C17orf76-AS1->chr17:16342136-16381992:+,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.024	TRUE	0	0	0	4	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MACF1--NDUFS5	1	1	MACF1	15382	chr1:39723700:+	NDUFS5	127546	chr1:39500064:+	ONLY_REF_SPLICE	YES	33	570	0.06	0	0.012	0.012	LOCAL_REARRANGEMENT:+:[46680],MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,NDUFS5->NADH:ubiquinone_oxidoreductase_subunit_S5,chr1:39491990-39500308:+	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.024	FALSE	0	1	0	1	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	1	1	NOC4L	1158	chr12:132629150:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	51	37	0.04	0.05	0.012	0.012	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.05	0.024	TRUE	0	0	0	1	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	7	0	0.22	1	0.012	0.012	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.024	FALSE	125	705	46	456	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--TUBGCP6	1	1	PROSC	2996	chr8:37623873:+	TUBGCP6	26031	chr22:50658444:-	ONLY_REF_SPLICE	YES	237	62	0.01	0.03	0.012	0.012	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.024	FALSE	2	2	1	4	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTC12--SHARPIN	1	1	TTC12	8631	chr11:113205759:+	SHARPIN	34346	chr8:145158128:-	ONLY_REF_SPLICE	YES	3	96	0.4	0.02	0.012	0.012	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},TTC12->chr11:113185251-113254266:+,tetratricopeptide_repeat_domain_12,SHARPIN->SHANK_associated_RH_domain_interactor,chr8:145153536-145163027:-	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.4	0.024	TRUE	0	0	0	1	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB2--ARHGAP15	1	1	ZEB2	5479	chr2:145274845:-	ARHGAP15	64991	chr2:144381702:+	ONLY_REF_SPLICE	NO	75	152	0.03	0.01	0.012	0.012	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.08%,GTEx_FI:{Blood=[count:17=pct:9.8],Whole_Blood=[count:16=pct:12.1],Nerve=[count:6=pct:3.5],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=23,Nerve_-_Tibial=9,Spleen=4,Lung=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.024	FALSE	15	6	0	3	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB2--ARHGAP15	1	1	ZEB2	5479	chr2:145274845:-	ARHGAP15	56397	chr2:144276835:+	ONLY_REF_SPLICE	YES	75	187	0.03	0.01	0.012	0.012	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.08%,GTEx_FI:{Blood=[count:17=pct:9.8],Whole_Blood=[count:16=pct:12.1],Nerve=[count:6=pct:3.5],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=23,Nerve_-_Tibial=9,Spleen=4,Lung=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.024	FALSE	3	1	0	1	0	FALSE	ACH-000498
KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB2--ARHGAP15	1	1	ZEB2	5479	chr2:145274845:-	ARHGAP15	66126	chr2:144460988:+	ONLY_REF_SPLICE	YES	75	232	0.03	0.01	0.012	0.012	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.08%,GTEx_FI:{Blood=[count:17=pct:9.8],Whole_Blood=[count:16=pct:12.1],Nerve=[count:6=pct:3.5],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=23,Nerve_-_Tibial=9,Spleen=4,Lung=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	KO52_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.024	FALSE	15	6	0	3	0	FALSE	ACH-000498
TYKNU_OVARY	TIMM23B--LINC00843	118	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2526	0.2654	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TYKNU_OVARY	1	1	1.518	TRUE	508	994	45	981	0	FALSE	ACH-000430
TYKNU_OVARY	PROCR--EEF2	69	0	PROCR	3567	chr20:33764133:+	EEF2	10698	chr19:3982369:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7324	0	PROCR->chr20:33759876-33765165:+,protein_C_receptor,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	TYKNU_OVARY	1	1	0.7324	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	MT-TA--MT-TC	59	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6263	0.0849	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TYKNU_OVARY	1	1	0.7112	FALSE	462	80	0	856	0	FALSE	ACH-000430
TYKNU_OVARY	TIMM23--RP11-464F9.1	57	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	254	3	0.19	0.95	0.6051	0.0106	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TYKNU_OVARY	0.19	0.95	0.6157	TRUE	519	3926	326	965	0	FALSE	ACH-000430
TYKNU_OVARY	RICTOR--FYB	49	11	RICTOR	19461	chr5:38962417:-	FYB	54685	chr5:39153706:-	ONLY_REF_SPLICE	YES	29	1	0.67	0.98	0.5201	0.1168	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[30828],RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-,FYB->FYN_binding_protein,chr5:39105338-39274630:-	TYKNU_OVARY	0.67	0.98	0.6369	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	MT-TA--MT-TC	47	8	MT-TA	1053	chrM:5603:-	MT-TC	4081	chrM:5815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4989	0.0849	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TYKNU_OVARY	1	1	0.5838	FALSE	462	80	0	856	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND6--MT-TE	30	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3185	0.0106	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TYKNU_OVARY	1	1	0.3291	FALSE	499	1288	110	792	0	FALSE	ACH-000430
TYKNU_OVARY	PLXDC1--TAF13	27	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2866	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	TYKNU_OVARY	1	1	0.2866	TRUE	7	10	0	216	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND6--MT-TE	19	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.2017	0.138	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TYKNU_OVARY	0.89	1	0.3397	FALSE	499	1288	110	792	0	FALSE	ACH-000430
TYKNU_OVARY	ZNF654--HMGB2	22	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2335	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TYKNU_OVARY	1	1	0.2335	TRUE	0	0	0	518	0	FALSE	ACH-000430
TYKNU_OVARY	NFIC--CELF5	18	12	NFIC	3773	chr19:3382241:+	CELF5	27593	chr19:3250983:+	ONLY_REF_SPLICE	YES	93	0	0.24	1	0.1911	0.1274	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[62487],NFIC->Oncogene{Bushman},chr19:3359561-3469215:+,nuclear_factor_I_C,CELF5->CUGBP,_Elav-like_family_member_5,chr19:3224701-3297074:+	TYKNU_OVARY	0.24	1	0.3185	TRUE	0	1	0	1	1	TRUE	ACH-000430
TYKNU_OVARY	MT-TA--MT-TN	9	39	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0955	0.414	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TYKNU_OVARY	1	1	0.5095	FALSE	369	2501	205	193	0	FALSE	ACH-000430
TYKNU_OVARY	C15orf57--CBX3	13	20	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	56	72	0.37	0.31	0.138	0.2123	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TYKNU_OVARY	0.31	0.37	0.3503	TRUE	267	562	48	632	0	FALSE	ACH-000430
TYKNU_OVARY	MT-TA--MT-TN	14	16	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1486	0.1698	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TYKNU_OVARY	1	1	0.3184	FALSE	369	2501	205	193	0	FALSE	ACH-000430
TYKNU_OVARY	RP11-96H19.1--RP11-446N19.1	15	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1592	0.0425	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TYKNU_OVARY	1	1	0.2017	FALSE	515	4851	409	746	0	FALSE	ACH-000430
TYKNU_OVARY	MT-TA--MT-TN	15	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1592	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TYKNU_OVARY	1	1	0.1592	FALSE	369	2501	205	193	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ATP6--MT-CO2	11	10	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	50	16	0.3	0.57	0.1168	0.1062	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TYKNU_OVARY	0.3	0.57	0.223	FALSE	59	21	0	114	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND6--MT-TE	13	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.138	0.0106	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TYKNU_OVARY	1	1	0.1486	FALSE	499	1288	110	792	0	FALSE	ACH-000430
TYKNU_OVARY	SETD3--CCDC85C	13	1	SETD3	9427	chr14:99879288:-	CCDC85C	27600	chr14:100002425:-	ONLY_REF_SPLICE	YES	97	108	0.13	0.11	0.138	0.0106	LOCAL_REARRANGEMENT:-:[30387],SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,CCDC85C->chr14:99977603-100070363:-,coiled-coil_domain_containing_85C	TYKNU_OVARY	0.11	0.13	0.1486	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	C15orf57--CBX3	9	14	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	52	74	0.31	0.24	0.0955	0.1486	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TYKNU_OVARY	0.24	0.31	0.2441	TRUE	267	562	48	632	0	FALSE	ACH-000430
TYKNU_OVARY	MT-TA--MT-TN	5	26	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0.276	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TYKNU_OVARY	1	1	0.3291	FALSE	369	2501	205	193	0	FALSE	ACH-000430
TYKNU_OVARY	EEF2--RPS28	11	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1168	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	TYKNU_OVARY	1	1	0.1168	TRUE	0	0	0	100	0	FALSE	ACH-000430
TYKNU_OVARY	HSP90AB1--MT-RNR2	10	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3355	0	0	1	0.1062	0.0106	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TYKNU_OVARY	0	1	0.1168	FALSE	13	9	0	364	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ATP6--MT-CO2	7	9	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	46	14	0.26	0.53	0.0743	0.0955	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TYKNU_OVARY	0.26	0.53	0.1698	FALSE	59	21	0	114	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND3--MT-ATP8	9	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0955	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	1	1	0.0955	FALSE	351	233	23	137	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	9	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0955	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	1	1	0.0955	FALSE	230	193	14	283	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND6--MT-TE	4	20	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.0425	0.2123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TYKNU_OVARY	0.86	1	0.2548	FALSE	499	1288	110	792	0	FALSE	ACH-000430
TYKNU_OVARY	HSP90AB1--MT-RNR2	8	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3356	0	0	1	0.0849	0.0106	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TYKNU_OVARY	0	1	0.0955	FALSE	13	9	0	364	0	FALSE	ACH-000430
TYKNU_OVARY	C15orf57--CBX3	4	14	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	52	74	0.26	0.2	0.0425	0.1486	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TYKNU_OVARY	0.2	0.26	0.1911	TRUE	267	562	48	632	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ATP6--MT-CO2	6	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	38	15	0.19	0.38	0.0637	0.0318	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TYKNU_OVARY	0.19	0.38	0.0955	FALSE	59	21	0	114	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ATP6--MT-CO2	4	11	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	50	15	0.23	0.5	0.0425	0.1168	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TYKNU_OVARY	0.23	0.5	0.1593	FALSE	59	21	0	114	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	6	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17088	0	0	1	0.0637	0.0318	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	0	1	0.0955	FALSE	231	217	16	283	0	FALSE	ACH-000430
TYKNU_OVARY	RP11-680G10.1--GSE1	6	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	13	1	0.38	0.0637	0.0212	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TYKNU_OVARY	0.38	1	0.0849	TRUE	465	1949	224	605	0	FALSE	ACH-000430
TYKNU_OVARY	MT-TA--MT-TN	3	13	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0.138	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TYKNU_OVARY	1	1	0.1698	FALSE	369	2501	205	193	0	FALSE	ACH-000430
TYKNU_OVARY	ATAD2B--UBXN2A	5	4	ATAD2B	1560	chr2:24149425:-	UBXN2A	51286	chr2:24181171:+	ONLY_REF_SPLICE	YES	11	58	0.45	0.13	0.0531	0.0425	LOCAL_INVERSION:-:+:[171],ATAD2B->ATPase_family,_AAA_domain_containing_2B,chr2:23971534-24149984:-,UBXN2A->UBX_domain_protein_2A,chr2:24150155-24227779:+	TYKNU_OVARY	0.13	0.45	0.0956	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	6	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0637	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	1	1	0.0637	FALSE	231	204	14	283	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	6	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0637	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	1	1	0.0637	FALSE	231	205	14	283	0	FALSE	ACH-000430
TYKNU_OVARY	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0637	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TYKNU_OVARY	1	1	0.0637	FALSE	462	80	0	856	0	FALSE	ACH-000430
TYKNU_OVARY	TIE1--MT-CO3	5	4	TIE1	9894	chr1:43778848:+	MT-CO3	21828	chrM:9278:+	INCL_NON_REF_SPLICE	YES	1942	1	0	0.9	0.0531	0.0425	TIE1->Oncogene{Bushman},chr1:43766664-43788779:+,tyrosine_kinase_with_immunoglobulin_like_and_EGF_like_domains_1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TYKNU_OVARY	0	0.9	0.0956	FALSE	0	0	0	1	0	FALSE	ACH-000430
TYKNU_OVARY	VIM--TMSB4X	6	0	VIM	2162	chr10:17271419:+	TMSB4X	13357	chrX:12994379:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0637	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	TYKNU_OVARY	1	1	0.0637	TRUE	0	0	0	15	0	TRUE	ACH-000430
TYKNU_OVARY	WTAPP1--RUVBL1	6	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0637	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	TYKNU_OVARY	1	1	0.0637	TRUE	9	252	6	66	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	5	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15175	1	0	0.89	0.0531	0.0318	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	0	0.89	0.0849	FALSE	231	217	16	283	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	5	3	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2379	1	0	0.89	0.0531	0.0318	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	0	0.89	0.0849	FALSE	216	209	16	281	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	4	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	15175	0	0	1	0.0425	0.0531	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	0	1	0.0956	FALSE	231	217	16	283	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ATP6--MT-CO1	5	0	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TYKNU_OVARY	1	1	0.0531	FALSE	183	104	9	328	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	5	0	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	1	1	0.0531	FALSE	231	205	14	283	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ATP6--MT-CO1	4	3	MT-ATP6	1225	chrM:8751:+	MT-CO1	5165	chrM:6387:+	INCL_NON_REF_SPLICE	YES	206	18361	0.03	0	0.0425	0.0318	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TYKNU_OVARY	0	0.03	0.0743	FALSE	183	104	9	328	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ATP6--MT-CO2	4	3	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	37	14	0.16	0.33	0.0425	0.0318	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TYKNU_OVARY	0.16	0.33	0.0743	FALSE	59	21	0	114	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	4	3	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14316	1	0	0.88	0.0425	0.0318	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	0	0.88	0.0743	FALSE	231	217	16	283	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	4	3	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	15708	13	0	0.35	0.0425	0.0318	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	0	0.35	0.0743	FALSE	231	217	16	283	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	4	2	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	17110	0	0	1	0.0425	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	0	1	0.0637	FALSE	231	217	16	283	0	FALSE	ACH-000430
TYKNU_OVARY	MT-TA--MT-TC	3	6	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0.0637	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TYKNU_OVARY	1	1	0.0955	FALSE	462	80	0	856	0	FALSE	ACH-000430
TYKNU_OVARY	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.4	0.0425	0.0212	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TYKNU_OVARY	0.4	1	0.0637	TRUE	458	1351	185	561	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ATP6--MT-CO2	3	5	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	37	17	0.18	0.32	0.0318	0.0531	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TYKNU_OVARY	0.18	0.32	0.0849	FALSE	59	21	0	114	0	FALSE	ACH-000430
TYKNU_OVARY	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0318	0.0531	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TYKNU_OVARY	0.89	1	0.0849	FALSE	467	2173	244	435	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0425	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TYKNU_OVARY	1	1	0.0425	FALSE	183	104	9	328	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ATP6--MT-CO1	4	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0425	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TYKNU_OVARY	1	1	0.0425	FALSE	183	104	9	328	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	4	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0425	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	1	1	0.0425	FALSE	231	205	14	283	0	FALSE	ACH-000430
TYKNU_OVARY	MT-TA--MT-TN	4	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0425	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TYKNU_OVARY	1	1	0.0425	FALSE	369	2501	205	193	0	FALSE	ACH-000430
TYKNU_OVARY	RP11-155G15.2--RP11-1E3.1	4	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0425	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	TYKNU_OVARY	1	1	0.0425	FALSE	46	201	11	112	0	FALSE	ACH-000430
TYKNU_OVARY	RICTOR--FYB	3	3	RICTOR	19461	chr5:38962417:-	FYB	55842	chr5:39141243:-	ONLY_REF_SPLICE	YES	29	6	0.17	0.5	0.0318	0.0318	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[30828],RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-,FYB->FYN_binding_protein,chr5:39105338-39274630:-	TYKNU_OVARY	0.17	0.5	0.0636	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	ZYX--MT-ND4L	3	3	ZYX	8185	chr7:143087873:+	MT-ND4L	11519	chrM:10472:+	INCL_NON_REF_SPLICE	YES	1168	0	0.01	1	0.0318	0.0318	ZYX->chr7:143078173-143088204:+,zyxin,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TYKNU_OVARY	0.01	1	0.0636	FALSE	0	0	0	1	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ATP6--MT-CO1	3	2	MT-ATP6	1189	chrM:8715:+	MT-CO1	5220	chrM:6442:+	INCL_NON_REF_SPLICE	YES	125	18372	0.04	0	0.0318	0.0212	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TYKNU_OVARY	0	0.04	0.053	FALSE	183	104	9	328	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	17732	0	0	1	0.0318	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	0	1	0.053	FALSE	231	217	16	283	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1531	chrM:11290:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	19215	1	0	0.83	0.0318	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	0	0.83	0.053	FALSE	231	217	16	283	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	15175	55	0	0.08	0.0318	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	0	0.08	0.053	FALSE	231	217	16	283	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	17994	2	0	0.67	0.0318	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	0	0.67	0.0424	FALSE	231	217	16	283	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	13297	1	0	0.8	0.0318	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	0	0.8	0.0424	FALSE	231	204	14	283	0	FALSE	ACH-000430
TYKNU_OVARY	ABCF2--MT-ND4L	3	0	ABCF2	11462	chr7:150911009:-	MT-ND4L	17168	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	ABCF2->ATP_binding_cassette_subfamily_F_member_2,chr7:150904923-150924316:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TYKNU_OVARY	1	1	0.0318	FALSE	0	0	0	2	0	FALSE	ACH-000430
TYKNU_OVARY	ATP6V1C1--AZIN1	3	0	ATP6V1C1	1163	chr8:104033453:+	AZIN1	27336	chr8:103870378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	GTEx&tcga_normals:1/3694=0.03%,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+,AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-	TYKNU_OVARY	1	1	0.0318	TRUE	0	1	0	3	0	TRUE	ACH-000430
TYKNU_OVARY	CALM3--MT-ATP8	3	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	1	1	0.0318	FALSE	12	0	0	26	0	FALSE	ACH-000430
TYKNU_OVARY	CFL1--MT-CO2	3	0	CFL1	6136	chr11:65623521:-	MT-CO2	16182	chrM:7822:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	CFL1->chr11:65590493-65629497:-,cofilin_1,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TYKNU_OVARY	1	1	0.0318	FALSE	0	0	0	2	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TYKNU_OVARY	1	1	0.0318	FALSE	183	104	9	328	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	3	0	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	1	1	0.0318	FALSE	231	205	14	283	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TYKNU_OVARY	1	1	0.0318	FALSE	231	204	14	283	0	FALSE	ACH-000430
TYKNU_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TYKNU_OVARY	1	1	0.0318	FALSE	499	1288	110	792	0	FALSE	ACH-000430
TYKNU_OVARY	RICTOR--FYB	3	0	RICTOR	1298	chr5:39074213:-	FYB	54685	chr5:39153706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[30828],RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-,FYB->FYN_binding_protein,chr5:39105338-39274630:-	TYKNU_OVARY	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	RTN4--MT-CO3	3	0	RTN4	5915	chr2:55277526:-	MT-CO3	22790	chrM:9278:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TYKNU_OVARY	1	1	0.0318	FALSE	0	0	0	3	0	FALSE	ACH-000430
TYKNU_OVARY	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0106	0.0743	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TYKNU_OVARY	0.89	1	0.0849	FALSE	192	492	57	212	0	FALSE	ACH-000430
TYKNU_OVARY	ATAD2B--UBXN2A	1	6	ATAD2B	1560	chr2:24149425:-	UBXN2A	49177	chr2:24162410:+	ONLY_REF_SPLICE	NO	11	2	0.39	0.78	0.0106	0.0637	LOCAL_INVERSION:-:+:[171],ATAD2B->ATPase_family,_AAA_domain_containing_2B,chr2:23971534-24149984:-,UBXN2A->UBX_domain_protein_2A,chr2:24150155-24227779:+	TYKNU_OVARY	0.39	0.78	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	NDUFA4--PHF14	2	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	1392	89	0	0.03	0.0212	0.0106	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	TYKNU_OVARY	0	0.03	0.0318	FALSE	19	32	3	60	0	FALSE	ACH-000430
TYKNU_OVARY	RCC1--SNX5	2	1	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	12	549	0.2	0.01	0.0212	0.0106	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	TYKNU_OVARY	0.01	0.2	0.0318	FALSE	0	5	0	11	0	FALSE	ACH-000430
TYKNU_OVARY	CRIM1--FEZ2	2	0	CRIM1	21418	chr2:36764689:+	FEZ2	48267	chr2:36779311:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	TYKNU_OVARY	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	ESYT2--LUC7L2	2	0	ESYT2	15034	chr7:158552177:-	LUC7L2	43361	chr7:139106909:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	ESYT2->chr7:158523686-158622944:-,extended_synaptotagmin_protein_2,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	TYKNU_OVARY	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	MGST1--ARHGDIA	2	0	MGST1	5873	chr12:16507204:+	ARHGDIA	25948	chr17:79827833:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-	TYKNU_OVARY	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	TYKNU_OVARY	1	1	0.0212	TRUE	145	312	16	51	0	FALSE	ACH-000430
TYKNU_OVARY	NRF1--CHD1L	2	0	NRF1	14906	chr7:129367205:+	CHD1L	23219	chr1:146724278:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	NRF1->Oncogene{Bushman},chr7:129251555-129396922:+,nuclear_respiratory_factor_1,CHD1L->chr1:146714291-146767443:+,chromodomain_helicase_DNA_binding_protein_1-like	TYKNU_OVARY	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	RP11-662B19.2--WDR37	2	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	TYKNU_OVARY	1	1	0.0212	TRUE	31	42	1	25	0	FALSE	ACH-000430
TYKNU_OVARY	ATAD2B--UBXN2A	1	2	ATAD2B	1560	chr2:24149425:-	UBXN2A	53458	chr2:24194146:+	ONLY_REF_SPLICE	NO	11	55	0.21	0.05	0.0106	0.0212	LOCAL_INVERSION:-:+:[171],ATAD2B->ATPase_family,_AAA_domain_containing_2B,chr2:23971534-24149984:-,UBXN2A->UBX_domain_protein_2A,chr2:24150155-24227779:+	TYKNU_OVARY	0.05	0.21	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000430
TYKNU_OVARY	NDUFB2--MORN4	1	2	NDUFB2	2961	chr7:140396642:+	MORN4	17473	chr10:99379440:-	ONLY_REF_SPLICE	YES	853	83	0	0.03	0.0106	0.0212	NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+,MORN4->MORN_repeat_containing_4,chr10:99374310-99393344:-	TYKNU_OVARY	0	0.03	0.0318	FALSE	0	0	0	1	0	FALSE	ACH-000430
TYKNU_OVARY	C17orf76-AS1--B2M	1	1	C17orf76-AS1	1593	chr17:16342728:+	B2M	15663	chr15:45007621:+	ONLY_REF_SPLICE	YES	87	109	0.02	0.02	0.0106	0.0106	C17orf76-AS1->chr17:16342136-16381992:+,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	TYKNU_OVARY	0.02	0.02	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000430
TYKNU_OVARY	PCDHGB2--DIAPH1	1	1	PCDHGB2	3421	chr5:140742123:+	DIAPH1	31655	chr5:140908508:-	ONLY_REF_SPLICE	YES	50	257	0.04	0.01	0.0106	0.0106	LOCAL_INVERSION:+:-:[2037],PCDHGB2->chr5:140739703-140892546:+,protocadherin_gamma_subfamily_B,_2,DIAPH1->chr5:140894583-140998622:-,diaphanous_related_formin_1	TYKNU_OVARY	0.01	0.04	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000430
TYKNU_OVARY	PPP1R12C--MICALL2	1	1	PPP1R12C	8950	chr19:55610152:-	MICALL2	35171	chr7:1468427:-	ONLY_REF_SPLICE	YES	64	0	0.03	1	0.0106	0.0106	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,MICALL2->MICAL_like_2,chr7:1468101-1499138:-	TYKNU_OVARY	0.03	1	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000430
TYKNU_OVARY	PUM1--HEY1	1	1	PUM1	6137	chr1:31501643:-	HEY1	34579	chr8:80678967:-	ONLY_REF_SPLICE	YES	148	572	0.01	0	0.0106	0.0106	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,HEY1->Oncogene{Bushman},chr8:80676245-80680098:-,hes_related_family_bHLH_transcription_factor_with_YRPW_motif_1	TYKNU_OVARY	0	0.01	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000430
TYKNU_OVARY	RPS12--DKFZP761J1410	1	1	RPS12	2887	chr6:133137702:+	DKFZP761J1410	13949	chr19:11474389:+	ONLY_REF_SPLICE	NO	1577	55	0	0.04	0.0106	0.0106	RPS12->chr6:133135580-133138703:+,ribosomal_protein_S12,DKFZP761J1410->chr19:11466062-11476374:+	TYKNU_OVARY	0	0.04	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000430
TYKNU_OVARY	RSU1--CUBN	1	1	RSU1	1556	chr10:16858972:-	CUBN	81629	chr10:16893442:-	ONLY_REF_SPLICE	NO	536	13	0	0.13	0.0106	0.0106	LOCAL_REARRANGEMENT:-:[6436],RSU1->Ras_suppressor_protein_1,chr10:16632610-16859527:-,CUBN->Oncogene{Bushman},chr10:16865963-17171830:-,cubilin	TYKNU_OVARY	0	0.13	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000430
TYKNU_OVARY	SLTM--RP11-680F20.9	1	1	SLTM	2298	chr15:59224555:-	RP11-680F20.9	30352	chr11:125773264:-	ONLY_REF_SPLICE	NO	83	0	0.02	1	0.0106	0.0106	SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-,RP11-680F20.9->chr11:125773142-125808811:-	TYKNU_OVARY	0.02	1	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000430
TYKNU_OVARY	TMEM123--BIRC2	1	1	TMEM123	5695	chr11:102319543:-	BIRC2	22451	chr11:102248227:+	ONLY_REF_SPLICE	YES	471	179	0	0.01	0.0106	0.0106	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},{Klijn_CCL:Brain=1},LOCAL_INVERSION:-:+:[17662],TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	TYKNU_OVARY	0	0.01	0.0212	FALSE	1	3	0	8	0	FALSE	ACH-000430
SH4_SKIN	ILF3--SLC44A2	502	231	ILF3	1227	chr19:10765163:+	SLC44A2	30993	chr19:10745432:+	ONLY_REF_SPLICE	YES	292	44	0.72	0.94	4.5494	2.0934	LOCAL_REARRANGEMENT:+:[9702],ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	SH4_SKIN	0.72	0.94	6.6428	TRUE	0	1	0	1	1	TRUE	ACH-000441
SH4_SKIN	TIMM23B--LINC00843	122	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1056	0.1812	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SH4_SKIN	1	1	1.2868	TRUE	508	994	45	981	0	FALSE	ACH-000441
SH4_SKIN	KANSL1--ARL17B	106	38	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	38	40	0.79	0.78	0.9606	0.3444	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SH4_SKIN	0.78	0.79	1.305	TRUE	181	1564	124	196	0	FALSE	ACH-000441
SH4_SKIN	ILF3--SLC44A2	25	241	ILF3	1863	chr19:10765799:+	SLC44A2	30993	chr19:10745432:+	ONLY_REF_SPLICE	YES	423	44	0.39	0.86	0.2266	2.1841	LOCAL_REARRANGEMENT:+:[9702],ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	SH4_SKIN	0.39	0.86	2.4107	TRUE	0	1	0	1	1	TRUE	ACH-000441
SH4_SKIN	TIMM23--RP11-464F9.1	85	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	230	2	0.27	0.98	0.7703	0.0091	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SH4_SKIN	0.27	0.98	0.7794	TRUE	519	3926	326	965	0	FALSE	ACH-000441
SH4_SKIN	ILF3--SLC44A2	6	241	ILF3	1887	chr19:10765823:+	SLC44A2	30993	chr19:10745432:+	ONLY_REF_SPLICE	YES	422	44	0.37	0.85	0.0544	2.1841	LOCAL_REARRANGEMENT:+:[9702],ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	SH4_SKIN	0.37	0.85	2.2385	TRUE	0	1	0	1	1	TRUE	ACH-000441
SH4_SKIN	MT-TA--MT-TC	51	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4622	0.0725	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SH4_SKIN	1	1	0.5347	FALSE	462	80	0	856	0	FALSE	ACH-000441
SH4_SKIN	MT-TA--MT-TC	50	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4531	0.0725	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SH4_SKIN	1	1	0.5256	FALSE	462	80	0	856	0	FALSE	ACH-000441
SH4_SKIN	PIP4K2B--C17orf98	41	13	PIP4K2B	9121	chr17:36933940:-	C17orf98	21001	chr17:36993493:-	ONLY_REF_SPLICE	YES	49	0	0.52	1	0.3716	0.1178	LOCAL_REARRANGEMENT:-:[34962],PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta,C17orf98->chr17:36991341-36997708:-,chromosome_17_open_reading_frame_98	SH4_SKIN	0.52	1	0.4894	TRUE	0	0	0	1	0	TRUE	ACH-000441
SH4_SKIN	PIP4K2B--C17orf98	37	10	PIP4K2B	9121	chr17:36933940:-	C17orf98	22101	chr17:36991599:-	ONLY_REF_SPLICE	YES	49	0	0.49	1	0.3353	0.0906	LOCAL_REARRANGEMENT:-:[34962],PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta,C17orf98->chr17:36991341-36997708:-,chromosome_17_open_reading_frame_98	SH4_SKIN	0.49	1	0.4259	TRUE	0	0	0	1	0	TRUE	ACH-000441
SH4_SKIN	PIP4K2B--RPL23	32	6	PIP4K2B	9121	chr17:36933940:-	RPL23	25532	chr17:37004292:-	ONLY_REF_SPLICE	YES	49	14	0.44	0.73	0.29	0.0544	LOCAL_REARRANGEMENT:-:[47739],PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta,RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23	SH4_SKIN	0.44	0.73	0.3444	TRUE	0	0	0	1	0	TRUE	ACH-000441
SH4_SKIN	ZNF654--HMGB2	28	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2537	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SH4_SKIN	1	1	0.2537	TRUE	0	0	0	518	0	FALSE	ACH-000441
SH4_SKIN	MT-ND6--MT-TE	24	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2175	0.0453	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SH4_SKIN	1	1	0.2628	FALSE	499	1288	110	792	0	FALSE	ACH-000441
SH4_SKIN	NPM1P24--SET	21	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1903	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SH4_SKIN	1	1	0.1903	TRUE	0	0	0	434	0	FALSE	ACH-000441
SH4_SKIN	RP11-123O10.4--GRIP1	15	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1359	0.0362	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SH4_SKIN	1	1	0.1721	FALSE	416	2512	207	587	0	FALSE	ACH-000441
SH4_SKIN	MT-ND6--MT-TE	8	19	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0725	0.1722	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SH4_SKIN	1	1	0.2447	FALSE	499	1288	110	792	0	FALSE	ACH-000441
SH4_SKIN	AC131097.3--D2HGDH	11	6	AC131097.3	2273	chr2:242824786:+	D2HGDH	23679	chr2:242707125:+	ONLY_REF_SPLICE	YES	0	168	1	0.09	0.0997	0.0544	AC131097.3->chr2:242823514-243020873:+,D2HGDH->D-2-hydroxyglutarate_dehydrogenase,chr2:242673994-242708231:+	SH4_SKIN	0.09	1	0.1541	TRUE	0	1	0	1	1	TRUE	ACH-000441
SH4_SKIN	MT-ND6--MT-TE	9	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.0816	0.1087	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SH4_SKIN	0.91	1	0.1903	FALSE	499	1288	110	792	0	FALSE	ACH-000441
SH4_SKIN	RP11-141M1.3--STARD13	10	6	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.0906	0.0544	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SH4_SKIN	0.89	1	0.145	FALSE	141	264	50	91	0	FALSE	ACH-000441
SH4_SKIN	MT-ND6--MT-TE	10	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0906	0.0453	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SH4_SKIN	1	1	0.1359	FALSE	499	1288	110	792	0	FALSE	ACH-000441
SH4_SKIN	CTA-392C11.1--DDHD2	9	2	CTA-392C11.1	2205	chr8:40191393:-	DDHD2	28084	chr8:38117558:+	ONLY_REF_SPLICE	YES	0	48	1	0.19	0.0816	0.0181	CTA-392C11.1->chr8:40156260-40200921:-,DDHD2->DDHD_domain_containing_2,chr8:38082736-38133076:+	SH4_SKIN	0.19	1	0.0997	TRUE	0	0	0	1	0	TRUE	ACH-000441
SH4_SKIN	ILF3--SLC44A2	4	22	ILF3	1227	chr19:10765163:+	SLC44A2	32560	chr19:10746999:+	ONLY_REF_SPLICE	YES	292	302	0.08	0.08	0.0362	0.1994	LOCAL_REARRANGEMENT:+:[9702],ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	SH4_SKIN	0.08	0.08	0.2356	TRUE	0	0	0	1	0	FALSE	ACH-000441
SH4_SKIN	MT-ND6--MT-TE	4	20	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0362	0.1812	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SH4_SKIN	0.92	1	0.2174	FALSE	499	1288	110	792	0	FALSE	ACH-000441
SH4_SKIN	RP11-141M1.3--STARD13	7	7	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0634	0.0634	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SH4_SKIN	0.88	1	0.1268	FALSE	49	120	16	70	0	FALSE	ACH-000441
SH4_SKIN	YWHAE--CRK	5	5	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1392	99	0.01	0.09	0.0453	0.0453	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SH4_SKIN	0.01	0.09	0.0906	FALSE	6	50	7	115	0	FALSE	ACH-000441
SH4_SKIN	CTA-392C11.1--DDHD2	6	0	CTA-392C11.1	1125	chr8:40200797:-	DDHD2	28084	chr8:38117558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0544	0	CTA-392C11.1->chr8:40156260-40200921:-,DDHD2->DDHD_domain_containing_2,chr8:38082736-38133076:+	SH4_SKIN	1	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000441
SH4_SKIN	MT-ND6--MT-TE	3	12	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0.1087	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SH4_SKIN	1	1	0.1359	FALSE	499	1288	110	792	0	FALSE	ACH-000441
SH4_SKIN	RP11-96H19.1--RP11-446N19.1	6	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0544	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SH4_SKIN	1	1	0.0544	FALSE	515	4851	409	746	0	FALSE	ACH-000441
SH4_SKIN	SCARB1--UBC	5	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	297	94	0.02	0.06	0.0453	0.0091	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SH4_SKIN	0.02	0.06	0.0544	TRUE	55	66	6	101	0	FALSE	ACH-000441
SH4_SKIN	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SH4_SKIN	1	1	0.0453	FALSE	499	1288	110	792	0	FALSE	ACH-000441
SH4_SKIN	RAB20--ING1	5	0	RAB20	1386	chr13:111213695:-	ING1	10788	chr13:111371576:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0453	0	GTEx_FI:{Blood=[count:3=pct:1.7],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=3,Lung=1,Adrenal_Gland=1},RAB20->RAB20,_member_RAS_oncogene_family,chr13:111175417-111214080:-,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	SH4_SKIN	1	1	0.0453	TRUE	4	0	0	3	0	FALSE	ACH-000441
SH4_SKIN	PIP4K2B--RPL23	3	6	PIP4K2B	9121	chr17:36933940:-	RPL23	25514	chr17:37004310:-	ONLY_REF_SPLICE	YES	49	14	0.16	0.39	0.0272	0.0544	LOCAL_REARRANGEMENT:-:[47739],PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta,RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23	SH4_SKIN	0.16	0.39	0.0816	TRUE	0	0	0	1	0	TRUE	ACH-000441
SH4_SKIN	GAS6-AS1--ING1	4	0	GAS6-AS1	1062	chr13:114518664:+	ING1	12881	chr13:111371576:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	SH4_SKIN	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000441
SH4_SKIN	ILF3--SLC44A2	3	4	ILF3	1227	chr19:10765163:+	SLC44A2	32899	chr19:10747338:+	ONLY_REF_SPLICE	YES	292	268	0.02	0.03	0.0272	0.0362	LOCAL_REARRANGEMENT:+:[9702],ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	SH4_SKIN	0.02	0.03	0.0634	TRUE	0	0	0	1	0	FALSE	ACH-000441
SH4_SKIN	RP1-34H18.1--NAV3	4	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SH4_SKIN	1	1	0.0362	TRUE	254	575	65	124	0	FALSE	ACH-000441
SH4_SKIN	WBP2--MT-ATP8	4	0	WBP2	9236	chr17:73842590:-	MT-ATP8	13153	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	WBP2->WW_domain_binding_protein_2,chr17:73841780-73852588:-,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SH4_SKIN	1	1	0.0362	FALSE	0	0	0	3	0	FALSE	ACH-000441
SH4_SKIN	ZNF654--HMGB2	4	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SH4_SKIN	1	1	0.0362	TRUE	0	0	0	518	0	FALSE	ACH-000441
SH4_SKIN	KANSL1--ARL17B	1	11	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	50	40	0.19	0.23	0.0091	0.0997	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SH4_SKIN	0.19	0.23	0.1088	TRUE	105	90	7	93	0	FALSE	ACH-000441
SH4_SKIN	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0.0272	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SH4_SKIN	1	1	0.0544	FALSE	462	80	0	856	0	FALSE	ACH-000441
SH4_SKIN	RP11-444D3.1--SOX5	3	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	9	1	0.4	0.0272	0.0272	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SH4_SKIN	0.4	1	0.0544	TRUE	477	1352	189	275	0	FALSE	ACH-000441
SH4_SKIN	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	7	1	0.42	0.0272	0.0181	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SH4_SKIN	0.42	1	0.0453	TRUE	465	1949	224	605	0	FALSE	ACH-000441
SH4_SKIN	E2F6--PDIA6	3	1	E2F6	9912	chr2:11587753:-	PDIA6	25255	chr2:10942766:-	ONLY_REF_SPLICE	YES	127	157	0.03	0.02	0.0272	0.0091	{Klijn_CCL:Lung=1},E2F6->E2F_transcription_factor_6,Oncogene{Bushman},chr2:11584501-11606297:-,PDIA6->chr2:10923517-10978103:-,protein_disulfide_isomerase_family_A_member_6	SH4_SKIN	0.02	0.03	0.0363	TRUE	0	0	0	1	0	FALSE	ACH-000441
SH4_SKIN	LGALS3--MT-CO3	3	1	LGALS3	4451	chr14:55605050:+	MT-CO3	12425	chrM:9547:+	INCL_NON_REF_SPLICE	YES	1453	9267	0	0	0.0272	0.0091	LGALS3->Oncogene{Bushman},chr14:55590828-55612126:+,lectin,_galactoside_binding_soluble_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SH4_SKIN	0	0	0.0363	FALSE	0	0	0	1	0	FALSE	ACH-000441
SH4_SKIN	MT-ND4--MT-CO3	3	1	MT-ND4	1514	chrM:11273:+	MT-CO3	5515	chrM:9343:+	INCL_NON_REF_SPLICE	YES	13751	4655	0	0	0.0272	0.0091	LOCAL_REARRANGEMENT:+:[770],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SH4_SKIN	0	0	0.0363	FALSE	1	2	0	1	0	FALSE	ACH-000441
SH4_SKIN	MT-ND4--MT-CO3	3	1	MT-ND4	1466	chrM:11225:+	MT-CO3	5764	chrM:9592:+	INCL_NON_REF_SPLICE	YES	13432	8356	0	0	0.0272	0.0091	LOCAL_REARRANGEMENT:+:[770],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SH4_SKIN	0	0	0.0363	FALSE	1	2	0	1	0	FALSE	ACH-000441
SH4_SKIN	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SH4_SKIN	1	1	0.0272	TRUE	0	0	0	434	0	FALSE	ACH-000441
SH4_SKIN	TRNP1--MT-ND4	3	0	TRNP1	1204	chr1:27320401:+	MT-ND4	7187	chrM:10970:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	TRNP1->TMF1-regulated_nuclear_protein_1,chr1:27320198-27327389:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SH4_SKIN	1	1	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000441
SH4_SKIN	VDAC1--CTD-2410N18.5	3	0	VDAC1	1487	chr5:133340338:-	CTD-2410N18.5	16152	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	VDAC1->chr5:133307606-133340824:-,voltage_dependent_anion_channel_1,CTD-2410N18.5->chr5:133502861-133561762:-	SH4_SKIN	1	1	0.0272	TRUE	0	0	0	6	0	TRUE	ACH-000441
SH4_SKIN	YIPF6--BAZ1B	3	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	SH4_SKIN	1	1	0.0272	TRUE	1	23	1	24	8	FALSE	ACH-000441
SH4_SKIN	YWHAE--PITPNA	2	1	YWHAE	1332	chr17:1303341:-	PITPNA	17821	chr17:1461853:-	ONLY_REF_SPLICE	YES	1392	6	0	0.33	0.0181	0.0091	{Klijn_CCL:Lung=1},YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,PITPNA->chr17:1421012-1466110:-,phosphatidylinositol_transfer_protein_alpha	SH4_SKIN	0	0.33	0.0272	FALSE	0	1	0	1	1	FALSE	ACH-000441
SH4_SKIN	NCOR2--UBC	2	0	NCOR2	3484	chr12:125002686:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SH4_SKIN	1	1	0.0181	TRUE	7	26	3	12	0	FALSE	ACH-000441
SH4_SKIN	SGK1--MXI1	2	0	SGK1	12893	chr6:134498801:-	MXI1	28317	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	SGK1->chr6:134490384-134639250:-,serum/glucocorticoid_regulated_kinase_1,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	SH4_SKIN	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000441
SH4_SKIN	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	26959	chr10:75454562:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SH4_SKIN	1	1	0.0181	TRUE	0	0	0	2	0	FALSE	ACH-000441
SH4_SKIN	UBR5--AZIN1	2	0	UBR5	1669	chr8:103424401:-	AZIN1	63524	chr8:103870378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx&tcga_normals:1/3694=0.03%,UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-	SH4_SKIN	1	1	0.0181	TRUE	0	0	0	4	0	TRUE	ACH-000441
SH4_SKIN	ZFP41--MFSD12	2	0	ZFP41	5520	chr8:144333510:+	MFSD12	31698	chr19:3538754:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	ZFP41->ZFP41_zinc_finger_protein,chr8:144328991-144344875:+,chr8:144329280-144358573:+,MFSD12->chr19:3538259-3574288:-,major_facilitator_superfamily_domain_containing_12	SH4_SKIN	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000441
SH4_SKIN	RP11-141M1.3--STARD13	1	3	RP11-141M1.3	5599	chr13:34098375:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	NO	4	0	0.5	1	0.0091	0.0272	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SH4_SKIN	0.5	1	0.0363	FALSE	9	22	2	16	0	FALSE	ACH-000441
SH4_SKIN	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	9	1	0.31	0.0091	0.0272	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SH4_SKIN	0.31	1	0.0363	TRUE	274	363	69	150	0	FALSE	ACH-000441
SH4_SKIN	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	1	1	0.75	0.0091	0.0181	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SH4_SKIN	0.75	1	0.0272	TRUE	458	1351	185	561	0	FALSE	ACH-000441
SH4_SKIN	ZC3H3--EEF1D	1	2	ZC3H3	4593	chr8:144618427:-	EEF1D	28612	chr8:144669019:-	ONLY_REF_SPLICE	NO	36	126	0.08	0.02	0.0091	0.0181	GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[38244],ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SH4_SKIN	0.02	0.08	0.0272	TRUE	3	0	0	4	0	FALSE	ACH-000441
SH4_SKIN	CENPF--ATF3	1	1	CENPF	1127	chr1:214776664:+	ATF3	38332	chr1:212788360:+	ONLY_REF_SPLICE	YES	12	117	0.14	0.02	0.0091	0.0091	CENPF->Oncogene{Bushman},centromere_protein_F,chr1:214776538-214837931:+,ATF3->Oncogene{Bushman},activating_transcription_factor_3,chr1:212738676-212794119:+	SH4_SKIN	0.02	0.14	0.0182	TRUE	0	0	0	1	0	FALSE	ACH-000441
SH4_SKIN	MMP14--ZBED4	1	1	MMP14	1369	chr14:23306134:+	ZBED4	14382	chr22:50276982:+	ONLY_REF_SPLICE	YES	1563	14	0	0.12	0.0091	0.0091	MMP14->Oncogene{Bushman},chr14:23305766-23318236:+,matrix_metallopeptidase_14,ZBED4->chr22:50247490-50283726:+,zinc_finger_BED-type_containing_4	SH4_SKIN	0	0.12	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000441
SH4_SKIN	NCOR2--UBC	1	1	NCOR2	9374	chr12:124950719:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	40	94	0.05	0.02	0.0091	0.0091	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SH4_SKIN	0.02	0.05	0.0182	TRUE	12	8	1	2	0	FALSE	ACH-000441
NCIH1648_LUNG	MT-ND4--MT-RNR2	103	2	MT-ND4	1947	chrM:11706:+	MT-RNR2	5392	chrM:1684:+	INCL_NON_REF_SPLICE	NO	15851	0	0.01	1	0.9444	0.0183	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1648_LUNG	0.01	1	0.9627	FALSE	13	19	3	21	0	FALSE	ACH-000766
NCIH1648_LUNG	C22orf39--AC023490.1	67	58	C22orf39	1865	chr22:19434891:-	AC023490.1	32925	chr22:20379465:+	INCL_NON_REF_SPLICE	YES	26	19	0.83	0.87	0.6143	0.5318	C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,AC023490.1->chr22:20378814-20380440:+	NCIH1648_LUNG	0.83	0.87	1.1461	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	MT-ND6--MT-TE	66	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6051	0.0275	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1648_LUNG	1	1	0.6326	FALSE	499	1288	110	792	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-TA--MT-TC	63	13	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5776	0.1192	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1648_LUNG	1	1	0.6968	FALSE	462	80	0	856	0	FALSE	ACH-000766
NCIH1648_LUNG	TIMM23B--LINC00843	61	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.5593	0.1375	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1648_LUNG	0.99	1	0.6968	TRUE	508	994	45	981	0	FALSE	ACH-000766
NCIH1648_LUNG	PRKCZ--RP4-758J18.10	53	10	PRKCZ	17465	chr1:2066786:+	RP4-758J18.10	36237	chr1:1369964:-	INCL_NON_REF_SPLICE	YES	50	0	0.56	1	0.486	0.0917	PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta,RP4-758J18.10->chr1:1365919-1369953:-	NCIH1648_LUNG	0.56	1	0.5777	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	WFDC2--SCNN1G	42	12	WFDC2	1827	chr20:44099172:+	SCNN1G	9630	chr16:23197549:+	ONLY_REF_SPLICE	YES	802	1	0.06	0.98	0.3851	0.11	{Klijn_CCL:Lung=1},WFDC2->WAP_four-disulfide_core_domain_2,chr20:44098346-44110172:+,SCNN1G->chr16:23194036-23228204:+,sodium_channel_epithelial_1_gamma_subunit	NCIH1648_LUNG	0.06	0.98	0.4951	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	TIMM23--RP11-464F9.1	35	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	78	4	0.32	0.9	0.3209	0.0092	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1648_LUNG	0.32	0.9	0.3301	TRUE	519	3926	326	965	0	FALSE	ACH-000766
NCIH1648_LUNG	NRIP1--AF127936.7	34	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.95	1	0.3117	0.0275	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1648_LUNG	0.95	1	0.3392	FALSE	292	1546	117	613	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	18	62	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	92	0.99	0.47	0.165	0.5685	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	0.47	0.99	0.7335	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	RP11-114H23.1--RP11-114H23.2	27	18	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.2476	0.165	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH1648_LUNG	0.98	1	0.4126	FALSE	81	155	12	160	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND6--MT-TE	27	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.2476	0.1467	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1648_LUNG	0.98	1	0.3943	FALSE	499	1288	110	792	0	FALSE	ACH-000766
NCIH1648_LUNG	ATR--GRAMD1C	27	6	ATR	47005	chr3:142176446:-	GRAMD1C	57626	chr3:113563350:+	ONLY_REF_SPLICE	YES	59	0	0.36	1	0.2476	0.055	ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,GRAMD1C->GRAM_domain_containing_1C,chr3:113547029-113666021:+	NCIH1648_LUNG	0.36	1	0.3026	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	MT-ND6--MT-TE	26	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2384	0.0367	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1648_LUNG	1	1	0.2751	FALSE	499	1288	110	792	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	26	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	13	0	0.68	1	0.2384	0.0183	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	0.68	1	0.2567	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	10	63	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	13	9	0.85	0.89	0.0917	0.5776	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	0.85	0.89	0.6693	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	9	66	MT-CO3	1159	chrM:9365:+	MT-ATP6	4932	chrM:8674:+	INCL_NON_REF_SPLICE	YES	14	37	0.84	0.67	0.0825	0.6051	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	0.67	0.84	0.6876	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	8	61	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	7	0.99	0.91	0.0734	0.5593	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	0.91	0.99	0.6327	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	8	60	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	5	0.99	0.93	0.0734	0.5501	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	0.93	0.99	0.6235	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	4	69	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	8	0	0.9	1	0.0367	0.6327	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	0.9	1	0.6694	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	CASP9--RNF220	20	4	CASP9	3165	chr1:15850564:-	RNF220	26048	chr1:45079837:+	ONLY_REF_SPLICE	YES	23	0	0.51	1	0.1834	0.0367	CASP9->Oncogene{Bushman},caspase_9,chr1:15817327-15853029:-,RNF220->Oncogene{Bushman},chr1:44870866-45117396:+,ring_finger_protein_220	NCIH1648_LUNG	0.51	1	0.2201	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	ZNF654--HMGB2	20	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1834	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1648_LUNG	1	1	0.1834	TRUE	0	0	0	518	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	3	64	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	11	7	0.86	0.91	0.0275	0.5868	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	0.86	0.91	0.6143	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	19	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1742	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	1	1	0.1742	FALSE	230	193	14	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	3	61	MT-CO3	1085	chrM:9291:+	MT-ATP6	5314	chrM:9056:+	INCL_NON_REF_SPLICE	YES	1	7	0.98	0.9	0.0275	0.5593	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	0.9	0.98	0.5868	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	ATR--GRAMD1C	16	8	ATR	47005	chr3:142176446:-	GRAMD1C	56426	chr3:113557588:+	INCL_NON_REF_SPLICE	YES	59	0	0.29	1	0.1467	0.0734	ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,GRAMD1C->GRAM_domain_containing_1C,chr3:113547029-113666021:+	NCIH1648_LUNG	0.29	1	0.2201	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	16	7	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14662	57	0	0.29	0.1467	0.0642	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.29	0.2109	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-RNR2	16	1	MT-ND4	1843	chrM:11602:+	MT-RNR2	5933	chrM:2225:+	INCL_NON_REF_SPLICE	YES	15016	5300	0	0	0.1467	0.0092	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1648_LUNG	0	0	0.1559	FALSE	13	19	3	21	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-TA--MT-TC	13	12	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1192	0.11	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1648_LUNG	1	1	0.2292	FALSE	462	80	0	856	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	12	14	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.11	0.1284	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	0.96	1	0.2384	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	14	6	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15095	7	0	0.74	0.1284	0.055	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.74	0.1834	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	NRIP1--AF127936.7	14	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	24	0	0.45	1	0.1284	0.055	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1648_LUNG	0.45	1	0.1834	FALSE	125	705	46	456	0	FALSE	ACH-000766
NCIH1648_LUNG	RALGAPB--SCNN1G	14	6	RALGAPB	26406	chr20:37187096:+	SCNN1G	43516	chr16:23197549:+	ONLY_REF_SPLICE	YES	63	1	0.24	0.95	0.1284	0.055	{Klijn_CCL:Lung=1},RALGAPB->Ral_GTPase_activating_protein_non-catalytic_beta_subunit,chr20:37101459-37207504:+,SCNN1G->chr16:23194036-23228204:+,sodium_channel_epithelial_1_gamma_subunit	NCIH1648_LUNG	0.24	0.95	0.1834	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	15	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1375	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	1	1	0.1375	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	15	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1375	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	1	1	0.1375	FALSE	231	205	14	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND6--MT-TE	11	16	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1009	0.1467	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1648_LUNG	1	1	0.2476	FALSE	499	1288	110	792	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	3	46	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	1	1	0.98	0.98	0.0275	0.4218	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	0.98	0.98	0.4493	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	NRIP1--AF127936.7	12	9	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	34	0	0.38	1	0.11	0.0825	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1648_LUNG	0.38	1	0.1925	FALSE	164	806	69	479	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-TA--MT-TC	14	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1284	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1648_LUNG	1	1	0.1284	FALSE	462	80	0	856	0	FALSE	ACH-000766
NCIH1648_LUNG	HSP90AB1--MT-RNR2	13	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2075	0	0.01	1	0.1192	0.0092	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1648_LUNG	0.01	1	0.1284	FALSE	13	9	0	364	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	5	28	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.79	0.0458	0.2567	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	0.79	1	0.3025	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	NPM1P24--SET	12	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.11	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1648_LUNG	1	1	0.11	TRUE	0	0	0	434	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND6--MT-TE	4	24	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0367	0.2201	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1648_LUNG	0.97	1	0.2568	FALSE	499	1288	110	792	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	4	23	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0367	0.2109	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	0.96	1	0.2476	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	8	7	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	14695	1	0	0.94	0.0734	0.0642	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.94	0.1376	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	9	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	15617	1	0	0.92	0.0825	0.0183	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.92	0.1008	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND6--MT-TE	3	25	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0275	0.2292	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1648_LUNG	0.97	1	0.2567	FALSE	499	1288	110	792	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ATP6--MT-CO1	8	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8603	19166	0	0	0.0734	0.0275	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1648_LUNG	0	0	0.1009	FALSE	183	104	9	328	0	FALSE	ACH-000766
NCIH1648_LUNG	APP--MT-CO3	8	2	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	869	8623	0.01	0	0.0734	0.0183	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH1648_LUNG	0	0.01	0.0917	FALSE	0	0	0	26	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ATP6--MT-CO1	8	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	7649	18832	0	0	0.0734	0.0092	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1648_LUNG	0	0	0.0826	FALSE	183	104	9	328	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	4	16	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	13	0	0.61	1	0.0367	0.1467	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	0.61	1	0.1834	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	8	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0734	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	1	1	0.0734	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0734	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	1	1	0.0734	FALSE	230	198	14	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-TA--MT-TC	5	12	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0.11	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1648_LUNG	1	1	0.1558	FALSE	462	80	0	856	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	6	7	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2552	57	0.01	0.19	0.055	0.0642	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0.01	0.19	0.1192	FALSE	216	209	16	281	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ATP6--MT-CO1	5	10	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	NO	4163	17483	0	0	0.0458	0.0917	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1648_LUNG	0	0	0.1375	FALSE	183	104	9	328	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	6	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	13	0	0.48	1	0.055	0.055	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	0.48	1	0.11	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	6	6	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	15374	817	0	0.01	0.055	0.055	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.01	0.11	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	GAPDH--MT-ND4L	7	0	GAPDH	4973	chr12:6647089:+	MT-ND4L	8570	chrM:10618:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0642	0	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1648_LUNG	1	1	0.0642	FALSE	0	0	0	3	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	5	8	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	15875	1	0	0.93	0.0458	0.0734	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.93	0.1192	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	5	8	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	15121	1	0	0.93	0.0458	0.0734	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.93	0.1192	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND6--MT-TE	7	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0642	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1648_LUNG	1	1	0.0642	FALSE	499	1288	110	792	0	FALSE	ACH-000766
NCIH1648_LUNG	RP11-114H23.1--RP11-114H23.2	4	12	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0367	0.11	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH1648_LUNG	0.94	1	0.1467	FALSE	81	155	12	160	0	FALSE	ACH-000766
NCIH1648_LUNG	WTAPP1--RUVBL1	7	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0642	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	NCIH1648_LUNG	1	1	0.0642	TRUE	9	252	6	66	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	5	7	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14538	57	0	0.17	0.0458	0.0642	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.17	0.11	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	5	7	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14013	57	0	0.17	0.0458	0.0642	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.17	0.11	FALSE	231	215	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	5	7	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4937	57	0	0.17	0.0458	0.0642	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.17	0.11	FALSE	218	210	16	281	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	5	7	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	14483	0	0	1	0.0458	0.0642	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	1	0.11	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	4	10	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0367	0.0917	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	0.93	1	0.1284	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	5	6	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	14538	191	0	0.05	0.0458	0.055	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.05	0.1008	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	4	9	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	14799	1	0	0.93	0.0367	0.0825	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.93	0.1192	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	15	1	0.32	0.055	0.0092	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1648_LUNG	0.32	1	0.0642	TRUE	465	1949	224	605	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	4	8	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.57	0.0367	0.0734	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	0.57	1	0.1101	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND3--MT-ATP8	6	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	1	1	0.055	FALSE	351	233	23	137	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	6	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	1	1	0.055	FALSE	231	204	14	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	4	8	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	14751	1	0	0.92	0.0367	0.0734	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.92	0.1101	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	3	12	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	5285	0	0	1	0.0275	0.11	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	1	0.1375	FALSE	222	212	16	282	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-TA--MT-TC	3	12	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0.11	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1648_LUNG	1	1	0.1375	FALSE	462	80	0	856	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ATP6--MT-CO1	3	10	MT-ATP6	1555	chrM:9081:+	MT-CO1	5199	chrM:6421:+	INCL_NON_REF_SPLICE	YES	2364	16833	0.01	0	0.0275	0.0917	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1648_LUNG	0	0.01	0.1192	FALSE	183	104	9	328	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	15545	0	0	1	0.0458	0.0183	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	1	0.0641	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ATP6--MT-CO1	5	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7571	19166	0	0	0.0458	0.0092	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1648_LUNG	0	0	0.055	FALSE	183	104	9	328	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	NO	8235	0	0	1	0.0458	0.0092	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1648_LUNG	0	1	0.055	FALSE	63	17	1	58	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	3	9	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	14967	0	0	1	0.0275	0.0825	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	1	0.11	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	4	5	MT-ND4	1538	chrM:11297:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17824	7	0	0.56	0.0367	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.56	0.0825	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	PFKL--MT-ND4L	5	1	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	326	0	0.02	1	0.0458	0.0092	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1648_LUNG	0.02	1	0.055	FALSE	0	0	0	33	0	FALSE	ACH-000766
NCIH1648_LUNG	RP11-123O10.4--GRIP1	5	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0.0092	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1648_LUNG	1	1	0.055	FALSE	416	2512	207	587	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1648_LUNG	1	1	0.0458	FALSE	63	17	1	58	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1783	chrM:11542:+	MT-ATP8	5389	chrM:8376:+	INCL_NON_REF_SPLICE	YES	15181	0	0	1	0.0275	0.0734	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	1	0.1009	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	1	1	0.0458	FALSE	230	198	14	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	15136	0	0	1	0.0275	0.0734	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	1	0.1009	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	1	1	0.0458	FALSE	231	204	14	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1648_LUNG	1	1	0.0458	FALSE	499	1288	110	792	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1648_LUNG	1	1	0.0458	FALSE	499	1288	110	792	0	FALSE	ACH-000766
NCIH1648_LUNG	RP5-884C9.2--SFPQ	5	0	RP5-884C9.2	1301	chr1:38513286:+	SFPQ	21950	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0	RP5-884C9.2->chr1:38512986-38584697:+,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	NCIH1648_LUNG	1	1	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	2015	chrM:11774:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	13908	817	0	0.01	0.0275	0.055	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.01	0.0825	FALSE	231	216	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	2326	chrM:12085:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	1	80	0.9	0.1	0.0275	0.055	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0.1	0.9	0.0825	FALSE	209	205	15	279	0	FALSE	ACH-000766
NCIH1648_LUNG	HSP90AB1--MT-RNR2	4	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2096	0	0	1	0.0367	0.0092	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1648_LUNG	0	1	0.0459	FALSE	13	9	0	364	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	7590	16934	0	0	0.0367	0.0092	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1648_LUNG	0	0	0.0459	FALSE	183	104	9	328	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ATP6--MT-CO1	4	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7530	19234	0	0	0.0367	0.0092	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1648_LUNG	0	0	0.0459	FALSE	183	104	9	328	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	17242	771	0	0.01	0.0275	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.01	0.0733	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND6--MT-TE	4	1	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0.0092	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1648_LUNG	1	1	0.0459	FALSE	499	1288	110	792	0	FALSE	ACH-000766
NCIH1648_LUNG	RP11-123O10.4--GRIP1	4	1	RP11-123O10.4	2167	chr12:67285681:-	GRIP1	11081	chr12:66990707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0.0092	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1648_LUNG	1	1	0.0459	FALSE	0	5	0	12	0	FALSE	ACH-000766
NCIH1648_LUNG	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0367	0.0092	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1648_LUNG	0.83	1	0.0459	FALSE	515	4851	409	746	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ATP6--MT-CO1	3	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	8603	0	0	1	0.0275	0.0367	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1648_LUNG	0	1	0.0642	FALSE	182	97	9	327	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1074	chrM:8600:+	MT-CO1	5869	chrM:7091:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1648_LUNG	1	1	0.0367	FALSE	183	104	9	328	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1648_LUNG	1	1	0.0367	FALSE	63	17	1	58	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	1	1	0.0367	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1515	chrM:11274:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	NO	16871	191	0	0.04	0.0275	0.0367	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.04	0.0642	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	1	1	0.0367	FALSE	230	193	14	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-RNR2	4	0	MT-ND4	1519	chrM:11278:+	MT-RNR2	5933	chrM:2225:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1648_LUNG	1	1	0.0367	FALSE	13	19	3	21	0	FALSE	ACH-000766
NCIH1648_LUNG	SKI--KCND3	4	0	SKI	2041	chr1:2161174:+	KCND3	18603	chr1:112329728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+,KCND3->chr1:112313284-112531777:-,potassium_voltage-gated_channel_subfamily_D_member_3	NCIH1648_LUNG	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	WFDC2--SCNN1G	1	12	WFDC2	2712	chr20:44100057:+	SCNN1G	9630	chr16:23197549:+	ONLY_REF_SPLICE	YES	889	1	0.01	0.93	0.0092	0.11	{Klijn_CCL:Lung=1},WFDC2->WAP_four-disulfide_core_domain_2,chr20:44098346-44110172:+,SCNN1G->chr16:23194036-23228204:+,sodium_channel_epithelial_1_gamma_subunit	NCIH1648_LUNG	0.01	0.93	0.1192	TRUE	0	0	0	1	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0.0275	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1648_LUNG	1	1	0.055	FALSE	462	80	0	856	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	15545	0	0	1	0.0275	0.0183	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	1	0.0458	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	PRKCZ--RP4-758J18.10	3	2	PRKCZ	17465	chr1:2066786:+	RP4-758J18.10	38533	chr1:1366334:-	ONLY_REF_SPLICE	YES	50	9	0.09	0.36	0.0275	0.0183	PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta,RP4-758J18.10->chr1:1365919-1369953:-	NCIH1648_LUNG	0.09	0.36	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	RP11-59N23.3--CMAS	3	2	RP11-59N23.3	2631	chr12:21913019:+	CMAS	6999	chr12:22208083:+	INCL_NON_REF_SPLICE	NO	0	140	1	0.03	0.0275	0.0183	RP11-59N23.3->chr12:21815247-21912966:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH1648_LUNG	0.03	1	0.0458	TRUE	0	0	0	3	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1082	chrM:8608:+	MT-CO1	5379	chrM:6601:+	INCL_NON_REF_SPLICE	YES	6263	19033	0	0	0.0275	0.0092	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1648_LUNG	0	0	0.0367	FALSE	183	104	9	328	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	15635	1	0	0.8	0.0275	0.0092	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	0.8	0.0367	FALSE	231	217	16	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	11467	0	0	1	0.0275	0.0092	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	0	1	0.0367	FALSE	230	197	14	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1158	chrM:8684:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1648_LUNG	1	1	0.0275	FALSE	63	17	1	58	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1132	chrM:8658:+	MT-RNR2	5436	chrM:2425:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1648_LUNG	1	1	0.0275	FALSE	63	17	1	58	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1648_LUNG	1	1	0.0275	FALSE	63	17	1	58	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1648_LUNG	1	1	0.0275	FALSE	63	17	1	58	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1648_LUNG	1	1	0.0275	FALSE	189	492	56	216	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1056	chrM:10815:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	1	1	0.0275	FALSE	230	192	14	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	1	1	0.0275	FALSE	230	193	14	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	1	1	0.0275	FALSE	231	204	14	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5571	chrM:8558:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	1	1	0.0275	FALSE	231	204	14	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1648_LUNG	1	1	0.0275	FALSE	231	204	14	283	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND4--MT-RNR2	3	0	MT-ND4	1253	chrM:11012:+	MT-RNR2	5441	chrM:1733:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1648_LUNG	1	1	0.0275	FALSE	13	19	3	21	0	FALSE	ACH-000766
NCIH1648_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1648_LUNG	1	1	0.0275	FALSE	499	1288	110	792	0	FALSE	ACH-000766
NCIH1648_LUNG	NFE2L1--MT-CO1	3	0	NFE2L1	9058	chr17:46135893:+	MT-CO1	15657	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1648_LUNG	1	1	0.0275	FALSE	0	0	0	1	0	FALSE	ACH-000766
NCIH1648_LUNG	PRKCZ--ANKRD65	3	0	PRKCZ	17465	chr1:2066786:+	ANKRD65	38468	chr1:1354929:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta,ANKRD65->ankyrin_repeat_domain_65,chr1:1353800-1357149:-	NCIH1648_LUNG	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	RPSAP52--HMGA2	3	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	NCIH1648_LUNG	1	1	0.0275	FALSE	0	59	0	125	0	FALSE	ACH-000766
NCIH1648_LUNG	SPNS3--NKIRAS2	3	0	SPNS3	1146	chr17:4337128:+	NKIRAS2	18714	chr17:40169358:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0275	0	SPNS3->chr17:4336983-4391503:+,spinster_homolog_3_(Drosophila),NKIRAS2->NFKB_inhibitor_interacting_Ras_like_2,chr17:40163400-40177659:+	NCIH1648_LUNG	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0.0092	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1648_LUNG	1	1	0.0275	FALSE	93	270	15	244	0	FALSE	ACH-000766
NCIH1648_LUNG	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0183	0.0092	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1648_LUNG	0.75	1	0.0275	FALSE	467	2173	244	435	0	FALSE	ACH-000766
NCIH1648_LUNG	BSG--MKNK2	2	0	BSG	2405	chr19:572701:+	MKNK2	16416	chr19:2043581:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,MKNK2->MAP_kinase_interacting_serine/threonine_kinase_2,chr19:2037470-2051243:-	NCIH1648_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	COPB2--ZNF880	2	0	COPB2	1185	chr3:139108390:-	ZNF880	28713	chr19:52876364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,ZNF880->chr19:52873170-52889048:+,zinc_finger_protein_880	NCIH1648_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	CTD-2127H9.1--SKIL	2	0	CTD-2127H9.1	1162	chr5:38845770:-	SKIL	11341	chr3:170077487:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	CTD-2127H9.1->chr5:38736157-38845931:-,SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+	NCIH1648_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	EDF1--NPDC1	2	0	EDF1	3072	chr9:139757358:-	NPDC1	10409	chr9:139935639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	{Klijn_CCL:Lung=1,Cervix=1,Pancreas=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,NPDC1->chr9:139933922-139940655:-,neural_proliferation,_differentiation_and_control,_1	NCIH1648_LUNG	1	1	0.0183	TRUE	0	0	0	5	0	TRUE	ACH-000766
NCIH1648_LUNG	PRDM2--IGF2BP1	2	0	PRDM2	9661	chr1:14075982:+	IGF2BP1	33734	chr17:47102980:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	PRDM2->Oncogene{Bushman},PR_domain_2,chr1:14026693-14151574:+,IGF2BP1->Oncogene{Bushman},chr17:47074774-47133012:+,insulin_like_growth_factor_2_mRNA_binding_protein_1	NCIH1648_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	WFDC2--SCNN1G	2	0	WFDC2	1155	chr20:44098500:+	SCNN1G	9630	chr16:23197549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	{Klijn_CCL:Lung=1},WFDC2->WAP_four-disulfide_core_domain_2,chr20:44098346-44110172:+,SCNN1G->chr16:23194036-23228204:+,sodium_channel_epithelial_1_gamma_subunit	NCIH1648_LUNG	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	ATR--GRAMD1C	1	3	ATR	47005	chr3:142176446:-	GRAMD1C	59089	chr3:113588354:+	ONLY_REF_SPLICE	NO	59	16	0.06	0.2	0.0092	0.0275	ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,GRAMD1C->GRAM_domain_containing_1C,chr3:113547029-113666021:+	NCIH1648_LUNG	0.06	0.2	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	METTL16--TXNDC17	1	2	METTL16	8197	chr17:2367502:-	TXNDC17	26780	chr17:6545073:+	ONLY_REF_SPLICE	YES	13	334	0.19	0.01	0.0092	0.0183	{Klijn_CCL:Lung=1},METTL16->chr17:2308856-2415185:-,methyltransferase_like_16,TXNDC17->chr17:6544078-6547861:+,thioredoxin_domain_containing_17	NCIH1648_LUNG	0.01	0.19	0.0275	FALSE	0	0	0	1	0	FALSE	ACH-000766
NCIH1648_LUNG	METTL16--TXNDC17	1	2	METTL16	8197	chr17:2367502:-	TXNDC17	27276	chr17:6545569:+	ONLY_REF_SPLICE	YES	13	330	0.19	0.01	0.0092	0.0183	{Klijn_CCL:Lung=1},METTL16->chr17:2308856-2415185:-,methyltransferase_like_16,TXNDC17->chr17:6544078-6547861:+,thioredoxin_domain_containing_17	NCIH1648_LUNG	0.01	0.19	0.0275	FALSE	0	0	0	1	0	FALSE	ACH-000766
NCIH1648_LUNG	RP11-114H23.1--RP11-114H23.2	1	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	1	5	0.75	0.38	0.0092	0.0183	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH1648_LUNG	0.38	0.75	0.0275	FALSE	81	155	12	160	0	FALSE	ACH-000766
NCIH1648_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0092	0.0183	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1648_LUNG	0.75	1	0.0275	FALSE	192	492	57	212	0	FALSE	ACH-000766
NCIH1648_LUNG	CPSF6--HMGA2	1	1	CPSF6	11046	chr12:69656342:+	HMGA2	31515	chr12:66345163:+	ONLY_REF_SPLICE	YES	117	509	0.02	0	0.0092	0.0092	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	NCIH1648_LUNG	0	0.02	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000766
NCIH1648_LUNG	CPSF6--HMGA2	1	1	CPSF6	11046	chr12:69656342:+	HMGA2	22145	chr12:66221781:+	ONLY_REF_SPLICE	YES	117	668	0.02	0	0.0092	0.0092	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	NCIH1648_LUNG	0	0.02	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000766
NCIH1648_LUNG	DIP2C--ZMYND11	1	1	DIP2C	7099	chr10:486811:-	ZMYND11	52575	chr10:225934:+	ONLY_REF_SPLICE	YES	6	16	0.25	0.11	0.0092	0.0092	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[19553],DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	NCIH1648_LUNG	0.11	0.25	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000766
NCIH1648_LUNG	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	2	12	0.5	0.14	0.0092	0.0092	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1648_LUNG	0.14	0.5	0.0184	FALSE	25	145	6	90	0	FALSE	ACH-000766
NCIH1648_LUNG	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	24	12	0.08	0.14	0.0092	0.0092	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1648_LUNG	0.08	0.14	0.0184	FALSE	7	44	2	41	0	FALSE	ACH-000766
NCIH1648_LUNG	RP11-59N23.3--CMAS	1	1	RP11-59N23.3	1459	chr12:21815705:+	CMAS	6999	chr12:22208083:+	ONLY_REF_SPLICE	NO	0	140	1	0.01	0.0092	0.0092	RP11-59N23.3->chr12:21815247-21912966:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH1648_LUNG	0.01	1	0.0184	FALSE	0	14	5	5	10	FALSE	ACH-000766
NCIH1648_LUNG	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	2	1	0.5	0.0092	0.0092	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1648_LUNG	0.5	1	0.0184	TRUE	458	1351	185	561	0	FALSE	ACH-000766
NCIH1648_LUNG	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0092	0.0092	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1648_LUNG	0.67	1	0.0184	FALSE	275	511	55	178	0	FALSE	ACH-000766
NCIH1648_LUNG	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0092	0.0092	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1648_LUNG	0.67	1	0.0184	FALSE	407	2205	196	549	0	FALSE	ACH-000766
NCIH1648_LUNG	SLC9A3R1--TNFRSF14	1	1	SLC9A3R1	4154	chr17:72759659:+	TNFRSF14	14587	chr1:2491262:+	ONLY_REF_SPLICE	NO	269	73	0.01	0.03	0.0092	0.0092	SLC9A3R1->Oncogene{Bushman},SLC9A3_regulator_1,chr17:72744791-72765492:+,TNFRSF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:2487078-2496821:+,tumor_necrosis_factor_receptor_superfamily_member_14	NCIH1648_LUNG	0.01	0.03	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000766
NCIH1648_LUNG	TXNRD1--RP11-818F20.4	1	1	TXNRD1	27532	chr12:104733051:+	RP11-818F20.4	36886	chr12:104571295:+	ONLY_REF_SPLICE	YES	1183	0	0	1	0.0092	0.0092	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH1648_LUNG	0	1	0.0184	FALSE	0	0	0	2	0	FALSE	ACH-000766
SKNMC_BONE	EWSR1--FLI1	273	83	EWSR1	11554	chr22:29683123:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	395	18	0.47	0.95	2.5549	0.7768	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKNMC_BONE	0.47	0.95	3.3317	TRUE	0	0	0	6	0	TRUE	ACH-000039
SKNMC_BONE	PVT1--RP11-26E5.1	131	24	PVT1	1202	chr8:128806980:+	RP11-26E5.1	29531	chr8:130452220:+	ONLY_REF_SPLICE	YES	79	0	0.66	1	1.226	0.2246	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-26E5.1->chr8:130428195-130458098:+	SKNMC_BONE	0.66	1	1.4506	TRUE	0	1	0	1	1	TRUE	ACH-000039
SKNMC_BONE	KIF1B--CNKSR2	92	40	KIF1B	7676	chr1:10322028:+	CNKSR2	71352	chrX:21515905:+	ONLY_REF_SPLICE	YES	53	0	0.71	1	0.861	0.3743	HGNC_GENEFAM,KIF1B->chr1:10270863-10441661:+,kinesin_family_member_1B,CNKSR2->chrX:21392536-21672813:+,connector_enhancer_of_kinase_suppressor_of_Ras_2	SKNMC_BONE	0.71	1	1.2353	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	YEATS2--GALNT13	92	27	YEATS2	1176	chr3:183415781:+	GALNT13	46208	chr2:154996850:+	ONLY_REF_SPLICE	YES	40	0	0.75	1	0.861	0.2527	YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+,GALNT13->chr2:154728426-155310361:+,polypeptide_N-acetylgalactosaminyltransferase_13	SKNMC_BONE	0.75	1	1.1137	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	ZNF654--HMGB2	66	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6177	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKNMC_BONE	1	1	0.6177	TRUE	0	0	0	518	0	FALSE	ACH-000039
SKNMC_BONE	TIMM23B--LINC00843	58	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5428	0.1029	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKNMC_BONE	1	1	0.6457	TRUE	508	994	45	981	0	FALSE	ACH-000039
SKNMC_BONE	MT-TA--MT-TC	47	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4398	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKNMC_BONE	1	1	0.4492	FALSE	462	80	0	856	0	FALSE	ACH-000039
SKNMC_BONE	TIMM23--RP11-464F9.1	38	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3556	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKNMC_BONE	1	1	0.3556	TRUE	519	3926	326	965	0	FALSE	ACH-000039
SKNMC_BONE	CDK5RAP2--RP11-423O2.7	32	21	CDK5RAP2	18830	chr9:123239628:-	RP11-423O2.7	51541	chr1:142952672:-	ONLY_REF_SPLICE	YES	53	0	0.5	1	0.2995	0.1965	CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,RP11-423O2.7->chr1:142950985-142956716:-	SKNMC_BONE	0.5	1	0.496	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	EWSR1--FLI1	15	85	EWSR1	12735	chr22:29684775:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	120	18	0.45	0.85	0.1404	0.7955	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKNMC_BONE	0.45	0.85	0.9359	TRUE	0	0	0	2	0	TRUE	ACH-000039
SKNMC_BONE	NPM1P24--SET	27	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	42	1338	0.4	0.02	0.2527	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNMC_BONE	0.02	0.4	0.2621	TRUE	0	0	0	434	0	FALSE	ACH-000039
SKNMC_BONE	OR51S1--TP53I11	25	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.234	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SKNMC_BONE	1	1	0.234	TRUE	402	216	10	229	0	FALSE	ACH-000039
SKNMC_BONE	RP11-680G10.1--GSE1	24	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	8	1	0.78	0.2246	0.0374	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKNMC_BONE	0.78	1	0.262	TRUE	458	1351	185	561	0	FALSE	ACH-000039
SKNMC_BONE	RP11-680G10.1--GSE1	23	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	19	1	0.56	0.2152	0.0094	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKNMC_BONE	0.56	1	0.2246	TRUE	465	1949	224	605	0	FALSE	ACH-000039
SKNMC_BONE	EWSR1--FLI1	1	83	EWSR1	11554	chr22:29683123:+	FLI1	35098	chr11:128651853:+	ONLY_REF_SPLICE	YES	395	0	0.18	1	0.0094	0.7768	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKNMC_BONE	0.18	1	0.7862	TRUE	0	0	0	5	0	TRUE	ACH-000039
SKNMC_BONE	FGFR3--TACC3	20	7	FGFR3	9864	chr4:1808661:+	TACC3	20430	chr4:1732899:+	ONLY_REF_SPLICE	YES	135	223	0.17	0.11	0.1872	0.0655	Cosmic{samples=250,mutations=14,papers=8},YOSHIHARA_TCGA_num_samples[BLCA:3|GBM:5|HNSC:2|LGG:1|LUSC:4],{Klijn_CCL:Liver=1,Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[48136],FGFR3->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:1795034-1810599:+,fibroblast_growth_factor_receptor_3,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	SKNMC_BONE	0.11	0.17	0.2527	TRUE	0	2	0	2	2	TRUE	ACH-000039
SKNMC_BONE	EWSR1--FLI1	9	48	EWSR1	11554	chr22:29683123:+	FLI1	39468	chr11:128677075:+	ONLY_REF_SPLICE	YES	395	20	0.13	0.74	0.0842	0.4492	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKNMC_BONE	0.13	0.74	0.5334	TRUE	0	0	0	4	0	TRUE	ACH-000039
SKNMC_BONE	MT-ND6--MT-TE	18	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1685	0.0374	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNMC_BONE	0.96	1	0.2059	FALSE	499	1288	110	792	0	FALSE	ACH-000039
SKNMC_BONE	PVT1--RP11-26E5.1	9	24	PVT1	2457	chr8:128808254:+	RP11-26E5.1	29531	chr8:130452220:+	ONLY_REF_SPLICE	YES	83	0	0.28	1	0.0842	0.2246	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-26E5.1->chr8:130428195-130458098:+	SKNMC_BONE	0.28	1	0.3088	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	MT-ND6--MT-TE	13	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1217	0.0374	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNMC_BONE	0.94	1	0.1591	FALSE	499	1288	110	792	0	FALSE	ACH-000039
SKNMC_BONE	MT-ND6--MT-TE	8	21	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0749	0.1965	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNMC_BONE	1	1	0.2714	FALSE	499	1288	110	792	0	FALSE	ACH-000039
SKNMC_BONE	NPM1P24--SET	12	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	NO	41	1487	0.24	0.01	0.1123	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNMC_BONE	0.01	0.24	0.1217	FALSE	0	0	0	434	0	FALSE	ACH-000039
SKNMC_BONE	YEATS2--GALNT13	10	7	YEATS2	1176	chr3:183415781:+	GALNT13	48512	chr2:155098543:+	ONLY_REF_SPLICE	YES	40	59	0.3	0.22	0.0936	0.0655	YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+,GALNT13->chr2:154728426-155310361:+,polypeptide_N-acetylgalactosaminyltransferase_13	SKNMC_BONE	0.22	0.3	0.1591	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	CDK5RAP2--RP11-423O2.7	6	15	CDK5RAP2	18830	chr9:123239628:-	RP11-423O2.7	52579	chr1:142951557:-	ONLY_REF_SPLICE	YES	53	0	0.28	1	0.0562	0.1404	CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,RP11-423O2.7->chr1:142950985-142956716:-	SKNMC_BONE	0.28	1	0.1966	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	EWSR1--FLI1	3	27	EWSR1	11554	chr22:29683123:+	FLI1	40528	chr11:128679052:+	ONLY_REF_SPLICE	YES	395	60	0.07	0.33	0.0281	0.2527	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKNMC_BONE	0.07	0.33	0.2808	TRUE	0	0	0	5	0	TRUE	ACH-000039
SKNMC_BONE	NIPA2--POLA1	9	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SKNMC_BONE	1	1	0.0842	TRUE	46	1352	75	139	0	FALSE	ACH-000039
SKNMC_BONE	WTAPP1--RUVBL1	8	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0749	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	SKNMC_BONE	1	1	0.0749	TRUE	9	252	6	66	0	FALSE	ACH-000039
SKNMC_BONE	MT-ND6--MT-TE	4	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0374	0.1404	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKNMC_BONE	0.95	1	0.1778	FALSE	499	1288	110	792	0	FALSE	ACH-000039
SKNMC_BONE	PVT1--RP11-26E5.1	1	24	PVT1	2520	chr8:128808317:+	RP11-26E5.1	29531	chr8:130452220:+	ONLY_REF_SPLICE	YES	84	0	0.23	1	0.0094	0.2246	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-26E5.1->chr8:130428195-130458098:+	SKNMC_BONE	0.23	1	0.234	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	NPM1P24--SET	6	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	41	1172	0.15	0.01	0.0562	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNMC_BONE	0.01	0.15	0.0656	FALSE	0	0	0	434	0	FALSE	ACH-000039
SKNMC_BONE	CALM3--MT-ND4L	4	5	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	855	0	0.01	1	0.0374	0.0468	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKNMC_BONE	0.01	1	0.0842	FALSE	1	1	0	107	0	FALSE	ACH-000039
SKNMC_BONE	NPM1P24--SET	5	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	41	1337	0.13	0	0.0468	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNMC_BONE	0	0.13	0.0562	FALSE	0	0	0	434	0	FALSE	ACH-000039
SKNMC_BONE	AC016907.3--ALK	5	0	AC016907.3	7645	chr2:30342634:-	ALK	15793	chr2:29940563:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0468	0	GTEx_FI:{Brain=[count:14=pct:2.1],Testis=[count:6=pct:5.7],Adrenal_Gland=[count:1=pct:1.2],Nerve=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Prostate=[count:1=pct:1.6]},AC016907.3->chr2:30273932-30366670:-,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	SKNMC_BONE	1	1	0.0468	TRUE	22	9	2	3	0	FALSE	ACH-000039
SKNMC_BONE	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKNMC_BONE	1	1	0.0468	FALSE	13	9	0	364	0	FALSE	ACH-000039
SKNMC_BONE	AL136376.1--RPS28	4	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SKNMC_BONE	1	1	0.0374	TRUE	0	0	0	12	0	TRUE	ACH-000039
SKNMC_BONE	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKNMC_BONE	1	1	0.0374	FALSE	13	9	0	364	0	FALSE	ACH-000039
SKNMC_BONE	RPLP0--NCL	4	0	RPLP0	2900	chr12:120637139:-	NCL	14557	chr2:232325257:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0	RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0,NCL->chr2:232318242-232348352:-,nucleolin	SKNMC_BONE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	SAMD5--SASH1	4	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SKNMC_BONE	1	1	0.0374	TRUE	53	396	64	110	0	FALSE	ACH-000039
SKNMC_BONE	CTB-78F1.2--TENM2	3	1	CTB-78F1.2	1045	chr5:167148412:+	TENM2	11546	chr5:167302991:+	ONLY_REF_SPLICE	YES	0	7	1	0.36	0.0281	0.0094	NEIGHBORS_OVERLAP:+:+:[7761],CTB-78F1.2->chr5:167148368-167156129:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	SKNMC_BONE	0.36	1	0.0375	FALSE	1	3	0	6	0	FALSE	ACH-000039
SKNMC_BONE	MT-TA--MT-TC	3	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKNMC_BONE	1	1	0.0375	FALSE	462	80	0	856	0	FALSE	ACH-000039
SKNMC_BONE	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	NO	42	1329	0.09	0	0.0281	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNMC_BONE	0	0.09	0.0375	FALSE	0	0	0	434	0	FALSE	ACH-000039
SKNMC_BONE	NPM1P24--SET	3	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	42	1456	0.09	0	0.0281	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNMC_BONE	0	0.09	0.0375	FALSE	0	0	0	434	0	FALSE	ACH-000039
SKNMC_BONE	KCNQ3--TG	3	0	KCNQ3	1807	chr8:133492394:-	TG	54626	chr8:133941321:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	KCNQ3->chr8:133133108-133493200:-,potassium_voltage-gated_channel_subfamily_Q_member_3,TG->chr8:133879203-134147147:+,thyroglobulin	SKNMC_BONE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKNMC_BONE	1	1	0.0281	FALSE	462	80	0	856	0	FALSE	ACH-000039
SKNMC_BONE	NDUFA4--PHF14	3	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SKNMC_BONE	1	1	0.0281	TRUE	19	32	3	60	0	FALSE	ACH-000039
SKNMC_BONE	ZNF738--CHMP1A	2	1	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	41	97	0.07	0.03	0.0187	0.0094	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SKNMC_BONE	0.03	0.07	0.0281	TRUE	1	20	1	28	3	FALSE	ACH-000039
SKNMC_BONE	DAD1--PPP2R3C	2	0	DAD1	1323	chr14:23057853:-	PPP2R3C	21044	chr14:35554984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	DAD1->chr14:23033805-23058175:-,defender_against_cell_death_1,PPP2R3C->chr14:35554673-35591723:-,protein_phosphatase_2_regulatory_subunit_B'',_gamma	SKNMC_BONE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	KCNQ3--TG	2	0	KCNQ3	1807	chr8:133492394:-	TG	53455	chr8:133935583:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	KCNQ3->chr8:133133108-133493200:-,potassium_voltage-gated_channel_subfamily_Q_member_3,TG->chr8:133879203-134147147:+,thyroglobulin	SKNMC_BONE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	LBH--YPEL5	2	0	LBH	1234	chr2:30454630:+	YPEL5	15967	chr2:30379494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	LOCAL_REARRANGEMENT:+:[70998],LBH->chr2:30454397-30546596:+,limb_bud_and_heart_development,YPEL5->chr2:30369807-30383399:+,yippee_like_5	SKNMC_BONE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	RP11-357C3.3--ARHGEF9	2	0	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	22895	chrX:62926329:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	SKNMC_BONE	1	1	0.0187	TRUE	0	3	0	3	0	TRUE	ACH-000039
SKNMC_BONE	XRCC2--SET	2	0	XRCC2	3268	chr7:152357786:-	SET	16513	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	XRCC2->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_2,chr7:152341864-152373250:-,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNMC_BONE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000039
SKNMC_BONE	FGF14-IT1--FGF14	1	3	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0094	0.0281	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	SKNMC_BONE	1	1	0.0375	TRUE	71	201	23	28	0	FALSE	ACH-000039
SKNMC_BONE	GDAP1--RP11-758M4.1	1	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	132	0	0.01	1	0.0094	0.0094	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	SKNMC_BONE	0.01	1	0.0188	FALSE	7	28	0	43	0	FALSE	ACH-000039
SKNMC_BONE	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0094	0.0094	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKNMC_BONE	1	1	0.0188	FALSE	416	2512	207	587	0	FALSE	ACH-000039
SKNMC_BONE	RP11-134O21.1--GNAS	1	1	RP11-134O21.1	3297	chr8:2562746:-	GNAS	29511	chr20:57470667:+	ONLY_REF_SPLICE	YES	106	920	0.02	0	0.0094	0.0094	RP11-134O21.1->chr8:2523591-2585991:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SKNMC_BONE	0	0.02	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000039
SKNMC_BONE	RP11-134O21.1--GNAS	1	1	RP11-134O21.1	8335	chr8:2532238:-	GNAS	29511	chr20:57470667:+	ONLY_REF_SPLICE	NO	18	920	0.1	0	0.0094	0.0094	RP11-134O21.1->chr8:2523591-2585991:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SKNMC_BONE	0	0.1	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000039
T3M4_PANCREAS	FRS2--KIAA1033	120	154	FRS2	5591	chr12:69924740:+	KIAA1033	28899	chr12:105512224:+	ONLY_REF_SPLICE	YES	41	56	0.87	0.83	1.3716	1.7603	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,KIAA1033->KIAA1033,chr12:105501102-105562912:+	T3M4_PANCREAS	0.83	0.87	3.1319	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	RP11-475J5.5--KRT6A	77	0	RP11-475J5.5	1398	chr5:99390352:-	KRT6A	5361	chr12:52887041:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8801	0	RP11-475J5.5->chr5:99389390-99390749:-,KRT6A->chr12:52880958-52887041:-,keratin_6A	T3M4_PANCREAS	1	1	0.8801	TRUE	0	0	0	2	0	TRUE	ACH-000085
T3M4_PANCREAS	KRT6A--KRT13	68	34	KRT6A	6110	chr12:52881585:-	KRT13	10025	chr17:39661670:-	INCL_NON_REF_SPLICE	NO	5475	6592	0.02	0.02	0.7773	0.3886	GTEx&tcga_normals:166/3694=4.49%,GTEx:4.46%,GTEx_FI:{Esophagus=[count:21=pct:5.2],Vagina=[count:10=pct:18.2],Cervix_Uteri=[count:2=pct:25.0],Ovary=[count:1=pct:1.9]},GTEx_v2:{count=7;pct=0.08%;dist=Esophagus_-_Mucosa=5,Vagina=2},KRT6A->chr12:52880958-52887041:-,keratin_6A,KRT13->chr17:39657233-39661957:-,keratin_13	T3M4_PANCREAS	0.02	0.02	1.1659	TRUE	28	3	2	1	0	FALSE	ACH-000085
T3M4_PANCREAS	MT-TA--MT-TC	51	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5829	0.0343	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	T3M4_PANCREAS	1	1	0.6172	FALSE	462	80	0	856	0	FALSE	ACH-000085
T3M4_PANCREAS	DHX16--FLOT1	43	27	DHX16	9573	chr6:30627249:-	FLOT1	22868	chr6:30695922:-	ONLY_REF_SPLICE	YES	156	267	0.31	0.21	0.4915	0.3086	LOCAL_REARRANGEMENT:-:[54672],DHX16->DEAH-box_helicase_16,chr6:30620896-30640814:-,FLOT1->chr6:30695486-30710510:-,flotillin_1	T3M4_PANCREAS	0.21	0.31	0.8001	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	C15orf57--CBX3	28	62	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	82	76	0.52	0.54	0.3201	0.7087	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	T3M4_PANCREAS	0.52	0.54	1.0288	TRUE	267	562	48	632	0	FALSE	ACH-000085
T3M4_PANCREAS	TIMM23B--LINC00843	36	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.4115	0.24	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	T3M4_PANCREAS	0.98	1	0.6515	TRUE	508	994	45	981	0	FALSE	ACH-000085
T3M4_PANCREAS	KRT6A--KRT13	33	31	KRT6A	6069	chr12:52881626:-	KRT13	10080	chr17:39661615:-	INCL_NON_REF_SPLICE	YES	5148	7696	0.01	0.01	0.3772	0.3543	GTEx&tcga_normals:166/3694=4.49%,GTEx:4.46%,GTEx_FI:{Esophagus=[count:21=pct:5.2],Vagina=[count:10=pct:18.2],Cervix_Uteri=[count:2=pct:25.0],Ovary=[count:1=pct:1.9]},GTEx_v2:{count=7;pct=0.08%;dist=Esophagus_-_Mucosa=5,Vagina=2},KRT6A->chr12:52880958-52887041:-,keratin_6A,KRT13->chr17:39657233-39661957:-,keratin_13	T3M4_PANCREAS	0.01	0.01	0.7315	TRUE	28	3	2	1	0	FALSE	ACH-000085
T3M4_PANCREAS	RP11-680G10.1--GSE1	31	12	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	20	1	0.68	0.3543	0.1372	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	T3M4_PANCREAS	0.68	1	0.4915	TRUE	465	1949	224	605	0	FALSE	ACH-000085
T3M4_PANCREAS	C15orf57--CBX3	16	48	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	84	77	0.43	0.45	0.1829	0.5487	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	T3M4_PANCREAS	0.43	0.45	0.7316	TRUE	267	562	48	632	0	FALSE	ACH-000085
T3M4_PANCREAS	FRS2--KIAA1033	1	104	FRS2	1182	chr12:69864310:+	KIAA1033	28899	chr12:105512224:+	ONLY_REF_SPLICE	YES	65	56	0.62	0.65	0.0114	1.1888	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,KIAA1033->KIAA1033,chr12:105501102-105562912:+	T3M4_PANCREAS	0.62	0.65	1.2002	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	KRT6A--KRT13	23	5	KRT6A	5550	chr12:52882145:-	KRT13	13037	chr17:39658658:-	INCL_NON_REF_SPLICE	YES	6394	14472	0	0	0.2629	0.0572	GTEx&tcga_normals:166/3694=4.49%,GTEx:4.46%,GTEx_FI:{Esophagus=[count:21=pct:5.2],Vagina=[count:10=pct:18.2],Cervix_Uteri=[count:2=pct:25.0],Ovary=[count:1=pct:1.9]},GTEx_v2:{count=7;pct=0.08%;dist=Esophagus_-_Mucosa=5,Vagina=2},KRT6A->chr12:52880958-52887041:-,keratin_6A,KRT13->chr17:39657233-39661957:-,keratin_13	T3M4_PANCREAS	0	0	0.3201	TRUE	29	3	2	1	0	FALSE	ACH-000085
T3M4_PANCREAS	RP11-123O10.4--GRIP1	21	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.24	0.0572	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	T3M4_PANCREAS	1	1	0.2972	FALSE	416	2512	207	587	0	FALSE	ACH-000085
T3M4_PANCREAS	TIMM23--RP11-464F9.1	19	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	266	9	0.08	0.71	0.2172	0.0343	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	T3M4_PANCREAS	0.08	0.71	0.2515	TRUE	519	3926	326	965	0	FALSE	ACH-000085
T3M4_PANCREAS	PLXDC1--TAF13	19	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2172	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	T3M4_PANCREAS	1	1	0.2172	TRUE	7	10	0	216	0	FALSE	ACH-000085
T3M4_PANCREAS	C18orf8--RP11-370A5.1	12	22	C18orf8	8775	chr18:21099138:+	RP11-370A5.1	22244	chr18:20366821:-	ONLY_REF_SPLICE	YES	76	0	0.31	1	0.1372	0.2515	C18orf8->chr18:21083473-21111746:+,chromosome_18_open_reading_frame_8,RP11-370A5.1->chr18:20303454-20487684:-	T3M4_PANCREAS	0.31	1	0.3887	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	KRT6A--KRT13	8	33	KRT6A	6078	chr12:52881617:-	KRT13	10017	chr17:39661678:-	INCL_NON_REF_SPLICE	NO	5278	6547	0.01	0.01	0.0914	0.3772	GTEx&tcga_normals:166/3694=4.49%,GTEx:4.46%,GTEx_FI:{Esophagus=[count:21=pct:5.2],Vagina=[count:10=pct:18.2],Cervix_Uteri=[count:2=pct:25.0],Ovary=[count:1=pct:1.9]},GTEx_v2:{count=7;pct=0.08%;dist=Esophagus_-_Mucosa=5,Vagina=2},KRT6A->chr12:52880958-52887041:-,keratin_6A,KRT13->chr17:39657233-39661957:-,keratin_13	T3M4_PANCREAS	0.01	0.01	0.4686	FALSE	28	3	2	1	0	FALSE	ACH-000085
T3M4_PANCREAS	HNRNPA2B1--KRT13	15	4	HNRNPA2B1	6683	chr7:26235467:-	KRT13	14953	chr17:39661591:-	INCL_NON_REF_SPLICE	YES	4150	7439	0	0	0.1715	0.0457	GTEx&tcga_normals:51/3694=1.38%,GTEx:0.65%,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,KRT13->chr17:39657233-39661957:-,keratin_13	T3M4_PANCREAS	0	0	0.2172	TRUE	0	0	0	1	0	FALSE	ACH-000085
T3M4_PANCREAS	C18orf8--RP11-370A5.1	12	12	C18orf8	8775	chr18:21099138:+	RP11-370A5.1	28681	chr18:20303712:-	ONLY_REF_SPLICE	YES	76	1	0.24	0.96	0.1372	0.1372	C18orf8->chr18:21083473-21111746:+,chromosome_18_open_reading_frame_8,RP11-370A5.1->chr18:20303454-20487684:-	T3M4_PANCREAS	0.24	0.96	0.2744	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	ZNF654--HMGB2	12	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1372	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	T3M4_PANCREAS	1	1	0.1372	TRUE	0	0	0	518	0	FALSE	ACH-000085
T3M4_PANCREAS	KRT6A--KRT13	5	27	KRT6A	6069	chr12:52881626:-	KRT13	10128	chr17:39661567:-	INCL_NON_REF_SPLICE	YES	5148	8494	0.01	0	0.0572	0.3086	GTEx&tcga_normals:166/3694=4.49%,GTEx:4.46%,GTEx_FI:{Esophagus=[count:21=pct:5.2],Vagina=[count:10=pct:18.2],Cervix_Uteri=[count:2=pct:25.0],Ovary=[count:1=pct:1.9]},GTEx_v2:{count=7;pct=0.08%;dist=Esophagus_-_Mucosa=5,Vagina=2},KRT6A->chr12:52880958-52887041:-,keratin_6A,KRT13->chr17:39657233-39661957:-,keratin_13	T3M4_PANCREAS	0	0.01	0.3658	TRUE	28	3	2	1	0	FALSE	ACH-000085
T3M4_PANCREAS	KRT6A--KRT13	8	15	KRT6A	1427	chr12:52886615:-	KRT13	10128	chr17:39661567:-	INCL_NON_REF_SPLICE	YES	6187	8494	0	0	0.0914	0.1715	GTEx&tcga_normals:166/3694=4.49%,GTEx:4.46%,GTEx_FI:{Esophagus=[count:21=pct:5.2],Vagina=[count:10=pct:18.2],Cervix_Uteri=[count:2=pct:25.0],Ovary=[count:1=pct:1.9]},GTEx_v2:{count=7;pct=0.08%;dist=Esophagus_-_Mucosa=5,Vagina=2},KRT6A->chr12:52880958-52887041:-,keratin_6A,KRT13->chr17:39657233-39661957:-,keratin_13	T3M4_PANCREAS	0	0	0.2629	TRUE	26	3	2	1	0	FALSE	ACH-000085
T3M4_PANCREAS	KRT6A--KRT13	4	28	KRT6A	6069	chr12:52881626:-	KRT13	10104	chr17:39661591:-	INCL_NON_REF_SPLICE	YES	5148	7438	0.01	0	0.0457	0.3201	GTEx&tcga_normals:166/3694=4.49%,GTEx:4.46%,GTEx_FI:{Esophagus=[count:21=pct:5.2],Vagina=[count:10=pct:18.2],Cervix_Uteri=[count:2=pct:25.0],Ovary=[count:1=pct:1.9]},GTEx_v2:{count=7;pct=0.08%;dist=Esophagus_-_Mucosa=5,Vagina=2},KRT6A->chr12:52880958-52887041:-,keratin_6A,KRT13->chr17:39657233-39661957:-,keratin_13	T3M4_PANCREAS	0	0.01	0.3658	TRUE	28	3	2	1	0	FALSE	ACH-000085
T3M4_PANCREAS	RP11-680G10.1--GSE1	7	12	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	12	1	0.61	0.08	0.1372	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	T3M4_PANCREAS	0.61	1	0.2172	TRUE	458	1351	185	561	0	FALSE	ACH-000085
T3M4_PANCREAS	KRT6A--KRT13	3	24	KRT6A	5991	chr12:52881704:-	KRT13	10116	chr17:39661579:-	INCL_NON_REF_SPLICE	NO	6128	7742	0	0	0.0343	0.2743	GTEx&tcga_normals:166/3694=4.49%,GTEx:4.46%,GTEx_FI:{Esophagus=[count:21=pct:5.2],Vagina=[count:10=pct:18.2],Cervix_Uteri=[count:2=pct:25.0],Ovary=[count:1=pct:1.9]},GTEx_v2:{count=7;pct=0.08%;dist=Esophagus_-_Mucosa=5,Vagina=2},KRT6A->chr12:52880958-52887041:-,keratin_6A,KRT13->chr17:39657233-39661957:-,keratin_13	T3M4_PANCREAS	0	0	0.3086	FALSE	28	3	2	1	0	FALSE	ACH-000085
T3M4_PANCREAS	SMG9--LYPD5	8	4	SMG9	11630	chr19:44237010:-	LYPD5	22903	chr19:44303986:-	ONLY_REF_SPLICE	YES	260	4	0.04	0.75	0.0914	0.0457	LOCAL_REARRANGEMENT:-:[40939],SMG9->SMG9_nonsense_mediated_mRNA_decay_factor,chr19:44235301-44259142:-,LYPD5->LY6/PLAUR_domain_containing_5,chr19:44300081-44331358:-	T3M4_PANCREAS	0.04	0.75	0.1371	TRUE	0	1	0	1	1	TRUE	ACH-000085
T3M4_PANCREAS	KRT6A--KRT13	6	11	KRT6A	1361	chr12:52886681:-	KRT13	10128	chr17:39661567:-	INCL_NON_REF_SPLICE	YES	6478	8494	0	0	0.0686	0.1257	GTEx&tcga_normals:166/3694=4.49%,GTEx:4.46%,GTEx_FI:{Esophagus=[count:21=pct:5.2],Vagina=[count:10=pct:18.2],Cervix_Uteri=[count:2=pct:25.0],Ovary=[count:1=pct:1.9]},GTEx_v2:{count=7;pct=0.08%;dist=Esophagus_-_Mucosa=5,Vagina=2},KRT6A->chr12:52880958-52887041:-,keratin_6A,KRT13->chr17:39657233-39661957:-,keratin_13	T3M4_PANCREAS	0	0	0.1943	TRUE	26	3	2	1	0	FALSE	ACH-000085
T3M4_PANCREAS	MT-TA--MT-TC	8	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0914	0.0229	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	T3M4_PANCREAS	1	1	0.1143	FALSE	462	80	0	856	0	FALSE	ACH-000085
T3M4_PANCREAS	RP11-96H19.1--RP11-446N19.1	5	14	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	0	0.83	1	0.0572	0.16	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	T3M4_PANCREAS	0.83	1	0.2172	FALSE	515	4851	409	746	0	FALSE	ACH-000085
T3M4_PANCREAS	MT-TA--MT-TC	7	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.08	0.0572	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	T3M4_PANCREAS	1	1	0.1372	FALSE	462	80	0	856	0	FALSE	ACH-000085
T3M4_PANCREAS	HNRNPA2B1--KRT13	7	4	HNRNPA2B1	7842	chr7:26233291:-	KRT13	14866	chr17:39661678:-	INCL_NON_REF_SPLICE	NO	3887	6545	0	0	0.08	0.0457	GTEx&tcga_normals:51/3694=1.38%,GTEx:0.65%,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,KRT13->chr17:39657233-39661957:-,keratin_13	T3M4_PANCREAS	0	0	0.1257	FALSE	0	0	0	1	0	FALSE	ACH-000085
T3M4_PANCREAS	C18orf8--RP11-370A5.1	2	22	C18orf8	8775	chr18:21099138:+	RP11-370A5.1	21153	chr18:20371162:-	ONLY_REF_SPLICE	YES	76	0	0.24	1	0.0229	0.2515	C18orf8->chr18:21083473-21111746:+,chromosome_18_open_reading_frame_8,RP11-370A5.1->chr18:20303454-20487684:-	T3M4_PANCREAS	0.24	1	0.2744	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	KRT6A--H19	7	1	KRT6A	5583	chr12:52882112:-	H19	12241	chr11:2017855:-	INCL_NON_REF_SPLICE	YES	6938	270	0	0.03	0.08	0.0114	KRT6A->chr12:52880958-52887041:-,keratin_6A,H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-	T3M4_PANCREAS	0	0.03	0.0914	FALSE	0	0	0	1	0	FALSE	ACH-000085
T3M4_PANCREAS	HNRNPA2B1--KRT13	6	4	HNRNPA2B1	6683	chr7:26235467:-	KRT13	14977	chr17:39661567:-	INCL_NON_REF_SPLICE	YES	4150	8494	0	0	0.0686	0.0457	GTEx&tcga_normals:51/3694=1.38%,GTEx:0.65%,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,KRT13->chr17:39657233-39661957:-,keratin_13	T3M4_PANCREAS	0	0	0.1143	TRUE	0	0	0	1	0	FALSE	ACH-000085
T3M4_PANCREAS	JUP--MT-CO3	4	11	JUP	8242	chr17:39923795:-	MT-CO3	24128	chrM:9574:+	INCL_NON_REF_SPLICE	YES	1923	24163	0.01	0	0.0457	0.1257	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	T3M4_PANCREAS	0	0.01	0.1714	FALSE	0	0	0	33	0	FALSE	ACH-000085
T3M4_PANCREAS	JUP--MT-CO3	5	7	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	2017	24365	0.01	0	0.0572	0.08	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	T3M4_PANCREAS	0	0.01	0.1372	FALSE	0	0	0	33	0	FALSE	ACH-000085
T3M4_PANCREAS	KRT6A--KRT13	4	6	KRT6A	5577	chr12:52882118:-	KRT13	12978	chr17:39658717:-	INCL_NON_REF_SPLICE	YES	6814	14547	0	0	0.0457	0.0686	GTEx&tcga_normals:166/3694=4.49%,GTEx:4.46%,GTEx_FI:{Esophagus=[count:21=pct:5.2],Vagina=[count:10=pct:18.2],Cervix_Uteri=[count:2=pct:25.0],Ovary=[count:1=pct:1.9]},GTEx_v2:{count=7;pct=0.08%;dist=Esophagus_-_Mucosa=5,Vagina=2},KRT6A->chr12:52880958-52887041:-,keratin_6A,KRT13->chr17:39657233-39661957:-,keratin_13	T3M4_PANCREAS	0	0	0.1143	TRUE	29	3	2	1	0	FALSE	ACH-000085
T3M4_PANCREAS	C18orf8--NRSN2	4	5	C18orf8	8775	chr18:21099138:+	NRSN2	22536	chr20:329893:+	ONLY_REF_SPLICE	YES	76	4	0.11	0.69	0.0457	0.0572	C18orf8->chr18:21083473-21111746:+,chromosome_18_open_reading_frame_8,NRSN2->chr20:327426-340304:+,neurensin_2	T3M4_PANCREAS	0.11	0.69	0.1029	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	16	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	4	0	0.81	1	0.0114	0.1829	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	T3M4_PANCREAS	0.81	1	0.1943	FALSE	407	2205	196	549	0	FALSE	ACH-000085
T3M4_PANCREAS	RP11-108K3.1--GLDN	4	3	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0457	0.0343	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	T3M4_PANCREAS	1	1	0.08	FALSE	0	19	0	46	0	FALSE	ACH-000085
T3M4_PANCREAS	SCARB1--UBC	4	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	22	193	0.19	0.03	0.0457	0.0114	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	T3M4_PANCREAS	0.03	0.19	0.0571	TRUE	55	66	6	101	0	FALSE	ACH-000085
T3M4_PANCREAS	RP11-114H23.1--RP11-114H23.2	3	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0.0343	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	T3M4_PANCREAS	1	1	0.0686	FALSE	81	155	12	160	0	FALSE	ACH-000085
T3M4_PANCREAS	KRT6A--KRT13	2	6	KRT6A	5583	chr12:52882112:-	KRT13	13699	chr17:39657996:-	ONLY_REF_SPLICE	YES	6935	12588	0	0	0.0229	0.0686	GTEx&tcga_normals:166/3694=4.49%,GTEx:4.46%,GTEx_FI:{Esophagus=[count:21=pct:5.2],Vagina=[count:10=pct:18.2],Cervix_Uteri=[count:2=pct:25.0],Ovary=[count:1=pct:1.9]},GTEx_v2:{count=7;pct=0.08%;dist=Esophagus_-_Mucosa=5,Vagina=2},KRT6A->chr12:52880958-52887041:-,keratin_6A,KRT13->chr17:39657233-39661957:-,keratin_13	T3M4_PANCREAS	0	0	0.0915	FALSE	29	3	2	1	0	FALSE	ACH-000085
T3M4_PANCREAS	RP11-603B24.1--HERC2P3	3	2	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	44	1	0.1	0.0343	0.0229	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	T3M4_PANCREAS	0.1	1	0.0572	TRUE	27	10	1	20	0	FALSE	ACH-000085
T3M4_PANCREAS	CCAT1--CASC8	2	5	CCAT1	1279	chr8:128231055:-	CASC8	12971	chr8:128433208:-	ONLY_REF_SPLICE	YES	28	1	0.2	0.88	0.0229	0.0572	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	T3M4_PANCREAS	0.2	0.88	0.0801	TRUE	0	7	0	7	7	TRUE	ACH-000085
T3M4_PANCREAS	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	T3M4_PANCREAS	1	1	0.0343	FALSE	462	80	0	856	0	FALSE	ACH-000085
T3M4_PANCREAS	NCOR2--UBC	3	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	T3M4_PANCREAS	1	1	0.0343	TRUE	145	312	16	51	0	FALSE	ACH-000085
T3M4_PANCREAS	RP11-108K3.1--GLDN	3	0	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	T3M4_PANCREAS	1	1	0.0343	FALSE	0	30	1	55	0	FALSE	ACH-000085
T3M4_PANCREAS	RP11-476K15.1--CTD-2015H3.2	3	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	T3M4_PANCREAS	1	1	0.0343	FALSE	0	46	0	73	0	FALSE	ACH-000085
T3M4_PANCREAS	RPSAP52--HMGA2	2	4	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	16	441	0.27	0.01	0.0229	0.0457	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	T3M4_PANCREAS	0.01	0.27	0.0686	FALSE	0	59	0	125	0	FALSE	ACH-000085
T3M4_PANCREAS	YWHAZ--ZNF706	3	0	YWHAZ	2460	chr8:101964157:-	ZNF706	24352	chr8:102213971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	GTEx_FI:{Skin=[count:2=pct:0.6],Blood=[count:2=pct:1.1],Esophagus=[count:1=pct:0.2],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta,ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706	T3M4_PANCREAS	1	1	0.0343	TRUE	5	5	0	7	0	FALSE	ACH-000085
T3M4_PANCREAS	APMAP--RP4-694B14.5	2	3	APMAP	1386	chr20:24973230:-	RP4-694B14.5	20448	chr20:25654488:+	ONLY_REF_SPLICE	YES	317	31	0.02	0.14	0.0229	0.0343	APMAP->adipocyte_plasma_membrane_associated_protein,chr20:24943561-24973615:-,RP4-694B14.5->chr20:25604681-25658710:+	T3M4_PANCREAS	0.02	0.14	0.0572	TRUE	0	0	0	1	0	FALSE	ACH-000085
T3M4_PANCREAS	RP11-123O10.4--GRIP1	2	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0229	0.0343	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	T3M4_PANCREAS	0.83	1	0.0572	FALSE	93	270	15	244	0	FALSE	ACH-000085
T3M4_PANCREAS	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0.0114	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	T3M4_PANCREAS	1	1	0.0343	TRUE	477	1352	189	275	0	FALSE	ACH-000085
T3M4_PANCREAS	DAPP1--TBCK	2	0	DAPP1	1182	chr4:100738171:+	TBCK	44367	chr4:107133992:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	DAPP1->chr4:100737990-100791311:+,dual_adaptor_of_phosphotyrosine_and_3-phosphoinositides,TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-	T3M4_PANCREAS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	EPB41L4A--MCC	2	0	EPB41L4A	1376	chr5:111754638:-	MCC	49883	chr5:112487119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	EPB41L4A->chr5:111478138-111755013:-,erythrocyte_membrane_protein_band_4.1_like_4A,MCC->Oncogene{Bushman},chr5:112357796-112824527:-,mutated_in_colorectal_cancers	T3M4_PANCREAS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	GRK5--ARHGDIA	2	0	GRK5	15753	chr10:121207772:+	ARHGDIA	23683	chr17:79827833:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+,ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-	T3M4_PANCREAS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	HDAC8--ETF1	2	0	HDAC8	16230	chrX:71681854:-	ETF1	28911	chr5:137849395:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	HDAC8->chrX:71549366-71792953:-,histone_deacetylase_8,ETF1->chr5:137841784-137878989:-,eukaryotic_translation_termination_factor_1	T3M4_PANCREAS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	KPNA6--KHDRBS1	2	0	KPNA6	1097	chr1:32573735:+	KHDRBS1	25219	chr1:32495899:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},LOCAL_REARRANGEMENT:+:[47188],KPNA6->chr1:32573639-32642169:+,karyopherin_subunit_alpha_6,KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+	T3M4_PANCREAS	1	1	0.0229	TRUE	0	0	0	2	0	TRUE	ACH-000085
T3M4_PANCREAS	RP1-43E13.2--EIF4G3	2	0	RP1-43E13.2	1059	chr1:19537053:+	EIF4G3	52467	chr1:21139732:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	RP1-43E13.2->chr1:19536995-19567198:+,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	T3M4_PANCREAS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	RP11-370A5.1--RIOK3	2	0	RP11-370A5.1	5641	chr18:20358082:-	RIOK3	17217	chr18:21046097:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	RP11-370A5.1->chr18:20303454-20487684:-,RIOK3->RIO_kinase_3,chr18:21032787-21066567:+	T3M4_PANCREAS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	SYNE3--GLRX5	2	0	SYNE3	20159	chr14:95898416:-	GLRX5	28549	chr14:96010284:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LOCAL_INVERSION:-:+:[57667],SYNE3->chr14:95883831-95942173:-,spectrin_repeat_containing_nuclear_envelope_family_member_3,GLRX5->chr14:95999840-96011061:+,glutaredoxin_5	T3M4_PANCREAS	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	C18orf8--RP11-739L10.1	1	3	C18orf8	8775	chr18:21099138:+	RP11-739L10.1	22356	chr18:20284883:-	ONLY_REF_SPLICE	YES	76	0	0.05	1	0.0114	0.0343	C18orf8->chr18:21083473-21111746:+,chromosome_18_open_reading_frame_8,RP11-739L10.1->chr18:20279444-20513727:-	T3M4_PANCREAS	0.05	1	0.0457	TRUE	0	0	0	1	0	TRUE	ACH-000085
T3M4_PANCREAS	RP11-108K3.1--GLDN	1	3	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0114	0.0343	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	T3M4_PANCREAS	1	1	0.0457	FALSE	0	14	0	30	0	FALSE	ACH-000085
T3M4_PANCREAS	RP11-281P23.1--RP11-281P23.2	1	2	RP11-281P23.1	1582	chr4:11471455:+	RP11-281P23.2	13426	chr4:11771933:+	ONLY_REF_SPLICE	YES	24	0	0.11	1	0.0114	0.0229	RP11-281P23.1->chr4:11470874-11479820:+,RP11-281P23.2->chr4:11627338-11815582:+	T3M4_PANCREAS	0.11	1	0.0343	TRUE	0	1	1	4	1	TRUE	ACH-000085
T3M4_PANCREAS	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	NO	0	294	1	0.01	0.0114	0.0114	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	T3M4_PANCREAS	0.01	1	0.0228	FALSE	347	1186	183	220	0	FALSE	ACH-000085
T3M4_PANCREAS	DOCK9--STK24	1	1	DOCK9	1403	chr13:99738477:-	STK24	65518	chr13:99171727:-	ONLY_REF_SPLICE	YES	43	34	0.04	0.06	0.0114	0.0114	{Klijn_CCL:Lung=1},DOCK9->chr13:99445741-99738879:-,dedicator_of_cytokinesis_9,STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24	T3M4_PANCREAS	0.04	0.06	0.0228	TRUE	0	2	0	1	0	FALSE	ACH-000085
T3M4_PANCREAS	HNRNPUL2--HNRNPA2B1	1	1	HNRNPUL2	7032	chr11:62487495:-	HNRNPA2B1	20590	chr7:26236101:-	ONLY_REF_SPLICE	YES	512	5361	0	0	0.0114	0.0114	HNRNPUL2->chr11:62480102-62494821:-,heterogeneous_nuclear_ribonucleoprotein_U-like_2,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1	T3M4_PANCREAS	0	0	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000085
T3M4_PANCREAS	NCOR2--CAPN1	1	1	NCOR2	39606	chr12:124829143:-	CAPN1	73365	chr11:64976794:+	ONLY_REF_SPLICE	YES	272	1818	0.01	0	0.0114	0.0114	NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,CAPN1->calpain_1,chr11:64948037-64979477:+	T3M4_PANCREAS	0	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000085
T3M4_PANCREAS	RP11-20I20.2--CTBP1	1	1	RP11-20I20.2	1114	chr4:1107540:+	CTBP1	8481	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	30	1	0.06	0.0114	0.0114	LOCAL_INVERSION:+:-:[78471],RP11-20I20.2->chr4:1107427-1126765:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	T3M4_PANCREAS	0.06	1	0.0228	TRUE	0	1	1	6	1	TRUE	ACH-000085
T3M4_PANCREAS	SCFD2--FIP1L1	1	1	SCFD2	6695	chr4:54011500:-	FIP1L1	22651	chr4:54265897:+	ONLY_REF_SPLICE	YES	137	367	0.01	0.01	0.0114	0.0114	GTEx_FI:{Pancreas=[count:1=pct:0.6],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=6;pct=0.07%;dist=Ovary=1,Prostate=1,Liver=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[11568],SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	T3M4_PANCREAS	0.01	0.01	0.0228	FALSE	0	1	0	1	0	FALSE	ACH-000085
T3M4_PANCREAS	ZFAND3--BTBD9	1	1	ZFAND3	8997	chr6:38084515:+	BTBD9	29566	chr6:38312869:-	ONLY_REF_SPLICE	YES	212	18	0.01	0.1	0.0114	0.0114	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[13827],ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3,BTBD9->BTB_domain_containing_9,chr6:38136227-38607924:-	T3M4_PANCREAS	0.01	0.1	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000085
HCC1599_BREAST	CYTH1--PRPSAP1	151	22	CYTH1	1096	chr17:76778284:-	PRPSAP1	31877	chr17:74340818:-	ONLY_REF_SPLICE	YES	0	53	1	0.77	1.4925	0.2174	Mitelman{CA_ad=1},{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,PRPSAP1->chr17:74305567-74380602:-,phosphoribosyl_pyrophosphate_synthetase-associated_protein_1	HCC1599_BREAST	0.77	1	1.7099	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	TIMM23B--LINC00843	147	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.4529	0.257	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1599_BREAST	0.99	1	1.7099	TRUE	508	994	45	981	0	FALSE	ACH-000196
HCC1599_BREAST	MT-TA--MT-TN	102	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0082	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1599_BREAST	1	1	1.0082	FALSE	369	2501	205	193	0	FALSE	ACH-000196
HCC1599_BREAST	TIMM23--RP11-464F9.1	76	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	174	2	0.31	0.97	0.7512	0.0198	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC1599_BREAST	0.31	0.97	0.771	TRUE	519	3926	326	965	0	FALSE	ACH-000196
HCC1599_BREAST	EXOC7--CYTH1	66	20	EXOC7	7025	chr17:74093877:-	CYTH1	31134	chr17:76705814:-	ONLY_REF_SPLICE	YES	84	7	0.51	0.92	0.6523	0.1977	{Klijn_CCL:Breast=1},EXOC7->chr17:74077087-74117657:-,exocyst_complex_component_7,CYTH1->chr17:76670130-76778379:-,cytohesin_1	HCC1599_BREAST	0.51	0.92	0.85	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	GCC2--SEPT10	66	10	GCC2	28232	chr2:109116210:+	SEPT10	42418	chr2:110323436:-	ONLY_REF_SPLICE	YES	11	69	0.87	0.52	0.6523	0.0988	GCC2->GRIP_and_coiled-coil_domain_containing_2,chr2:109065017-109125871:+,SEPT10->chr2:110300559-110371783:-,septin_10	HCC1599_BREAST	0.52	0.87	0.7511	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	RP11-206L10.11--CPSF3L	50	1	RP11-206L10.11	1168	chr1:763155:+	CPSF3L	28833	chr1:1250998:-	ONLY_REF_SPLICE	YES	8	42	0.86	0.55	0.4942	0.0099	RP11-206L10.11->chr1:762988-794826:+,CPSF3L->chr1:1246965-1260071:-,cleavage_and_polyadenylation_specific_factor_3-like	HCC1599_BREAST	0.55	0.86	0.5041	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	MSL2--TRA2B	44	16	MSL2	3270	chr3:135913814:-	TRA2B	20050	chr3:185644522:-	ONLY_REF_SPLICE	YES	33	477	0.65	0.11	0.4349	0.1581	MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila),TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	HCC1599_BREAST	0.11	0.65	0.593	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	MT-TA--MT-TC	34	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3361	0.0395	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1599_BREAST	1	1	0.3756	FALSE	462	80	0	856	0	FALSE	ACH-000196
HCC1599_BREAST	RP11-123O10.4--GRIP1	32	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3163	0.0395	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1599_BREAST	1	1	0.3558	FALSE	416	2512	207	587	0	FALSE	ACH-000196
HCC1599_BREAST	LIN54--SCD5	31	7	LIN54	6464	chr4:83891480:-	SCD5	28868	chr4:83602065:-	ONLY_REF_SPLICE	YES	8	18	0.83	0.68	0.3064	0.0692	LIN54->chr4:83831126-83934079:-,lin-54_DREAM_MuvB_core_complex_component,SCD5->chr4:83550692-83720010:-,stearoyl-CoA_desaturase_5	HCC1599_BREAST	0.68	0.83	0.3756	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	ANXA2--C15orf60	31	3	ANXA2	11842	chr15:60678227:-	C15orf60	33681	chr15:73766173:+	ONLY_REF_SPLICE	YES	790	0	0.04	1	0.3064	0.0297	ANXA2->annexin_A2,chr15:60639333-60695082:-,C15orf60->chr15:73735499-73852355:+	HCC1599_BREAST	0.04	1	0.3361	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	CYTH1--PRPSAP1	18	18	CYTH1	1096	chr17:76778284:-	PRPSAP1	32944	chr17:74328516:-	ONLY_REF_SPLICE	YES	0	43	1	0.46	0.1779	0.1779	Mitelman{CA_ad=1},{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,PRPSAP1->chr17:74305567-74380602:-,phosphoribosyl_pyrophosphate_synthetase-associated_protein_1	HCC1599_BREAST	0.46	1	0.3558	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	MT-TA--MT-TN	7	59	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0692	0.5831	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1599_BREAST	1	1	0.6523	FALSE	369	2501	205	193	0	FALSE	ACH-000196
HCC1599_BREAST	MT-TA--MT-TN	9	39	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.089	0.3855	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1599_BREAST	1	1	0.4745	FALSE	369	2501	205	193	0	FALSE	ACH-000196
HCC1599_BREAST	ANXA2--C15orf60	12	21	ANXA2	15528	chr15:60674541:-	C15orf60	33681	chr15:73766173:+	ONLY_REF_SPLICE	YES	2075	0	0.02	1	0.1186	0.2076	ANXA2->annexin_A2,chr15:60639333-60695082:-,C15orf60->chr15:73735499-73852355:+	HCC1599_BREAST	0.02	1	0.3262	TRUE	0	0	0	1	0	FALSE	ACH-000196
HCC1599_BREAST	MT-TA--MT-TN	10	20	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0988	0.1977	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1599_BREAST	1	1	0.2965	FALSE	369	2501	205	193	0	FALSE	ACH-000196
HCC1599_BREAST	ARHGAP32--CCDC101	14	3	ARHGAP32	1179	chr11:129149041:-	CCDC101	37443	chr16:28592376:+	ONLY_REF_SPLICE	YES	2	20	0.89	0.46	0.1384	0.0297	ARHGAP32->Rho_GTPase_activating_protein_32,chr11:128834955-129149219:-,CCDC101->chr16:28565236-28603111:+	HCC1599_BREAST	0.46	0.89	0.1681	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	MT-TA--MT-TN	5	37	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0494	0.3657	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1599_BREAST	1	1	0.4151	FALSE	369	2501	205	193	0	FALSE	ACH-000196
HCC1599_BREAST	MT-TA--MT-TN	14	1	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1384	0.0099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1599_BREAST	1	1	0.1483	FALSE	369	2501	205	193	0	FALSE	ACH-000196
HCC1599_BREAST	RP11-680G10.1--GSE1	13	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	26	1	0.35	0.1285	0.0099	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1599_BREAST	0.35	1	0.1384	TRUE	465	1949	224	605	0	FALSE	ACH-000196
HCC1599_BREAST	C1orf194--UQCR10	12	2	C1orf194	3284	chr1:109650635:-	UQCR10	8361	chr22:30163372:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1186	0.0198	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.41%,GTEx_FI:{Testis=[count:16=pct:15.2],Pituitary=[count:4=pct:7.7],Lung=[count:4=pct:2.4],Brain=[count:3=pct:0.5],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Fallopian_Tube=[count:1=pct:16.7],Thyroid=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=13;pct=0.15%;dist=Testis=12,Adipose_-_Subcutaneous=1},C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	HCC1599_BREAST	1	1	0.1384	TRUE	26	6	0	14	0	FALSE	ACH-000196
HCC1599_BREAST	MT-TA--MT-TN	3	37	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0.3657	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1599_BREAST	1	1	0.3954	FALSE	369	2501	205	193	0	FALSE	ACH-000196
HCC1599_BREAST	RP4-617C6.1--RP11-286B14.1	11	3	RP4-617C6.1	1638	chr1:95940930:+	RP11-286B14.1	10602	chr1:95979707:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1087	0.0297	NEIGHBORS[30760],RP4-617C6.1->chr1:95940293-95944912:+,RP11-286B14.1->chr1:95975672-96247898:+	HCC1599_BREAST	1	1	0.1384	FALSE	0	0	0	2	0	FALSE	ACH-000196
HCC1599_BREAST	DPP8--EXT2	10	2	DPP8	11678	chr15:65777437:-	EXT2	50716	chr11:44253903:+	ONLY_REF_SPLICE	YES	28	15	0.3	0.44	0.0988	0.0198	DPP8->chr15:65734801-65810042:-,dipeptidyl_peptidase_8,EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2	HCC1599_BREAST	0.3	0.44	0.1186	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	AC012487.2--LIMS1	9	5	AC012487.2	2451	chr2:109128386:-	LIMS1	14110	chr2:109276061:+	ONLY_REF_SPLICE	YES	1	107	0.93	0.12	0.089	0.0494	LOCAL_INVERSION:-:+:[205],AC012487.2->chr2:109123971-109150652:-,LIMS1->LIM_zinc_finger_domain_containing_1,chr2:109150857-109303702:+	HCC1599_BREAST	0.12	0.93	0.1384	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	NPM1P24--SET	10	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	NO	50	1572	0.18	0.01	0.0988	0.0099	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1599_BREAST	0.01	0.18	0.1087	FALSE	0	0	0	434	0	FALSE	ACH-000196
HCC1599_BREAST	GLIPR1--GLIPR1L2	10	0	GLIPR1	6697	chr12:75892500:+	GLIPR1L2	19810	chr12:75816684:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0988	0	PROTCLUST,LOCAL_REARRANGEMENT:+:[47992],GLIPR1->GLI_pathogenesis_related_1,chr12:75874460-75897633:+,GLIPR1L2->GLI_pathogenesis-related_1_like_2,chr12:75784850-75826468:+	HCC1599_BREAST	1	1	0.0988	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	MT-TA--MT-TN	10	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0988	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1599_BREAST	1	1	0.0988	FALSE	369	2501	205	193	0	FALSE	ACH-000196
HCC1599_BREAST	TMA7--NPRL2	9	3	TMA7	1372	chr3:48482038:+	NPRL2	7209	chr3:50387453:-	ONLY_REF_SPLICE	YES	721	68	0.02	0.15	0.089	0.0297	TMA7->chr3:48481667-48485616:+,translation_machinery_associated_7_homolog,NPRL2->NPR2-like,_GATOR1_complex_subunit,chr3:50384761-50388522:-	HCC1599_BREAST	0.02	0.15	0.1187	TRUE	0	0	0	1	0	FALSE	ACH-000196
HCC1599_BREAST	EXD3--NPDC1	8	1	EXD3	27957	chr9:140218177:-	NPDC1	36148	chr9:139937525:-	ONLY_REF_SPLICE	YES	9	22	0.5	0.29	0.0791	0.0099	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,NPDC1->chr9:139933922-139940655:-,neural_proliferation,_differentiation_and_control,_1	HCC1599_BREAST	0.29	0.5	0.089	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	MT-TA--MT-TC	7	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0692	0.0494	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1599_BREAST	1	1	0.1186	FALSE	462	80	0	856	0	FALSE	ACH-000196
HCC1599_BREAST	ZC3H11A--RP3-428L16.1	8	1	ZC3H11A	1141	chr1:203764922:+	RP3-428L16.1	30986	chr6:161380001:+	ONLY_REF_SPLICE	YES	92	0	0.09	1	0.0791	0.0099	ZC3H11A->chr1:203764782-203823252:+,zinc_finger_CCCH-type_containing_11A,RP3-428L16.1->chr6:161352112-161390803:+	HCC1599_BREAST	0.09	1	0.089	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0791	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1599_BREAST	1	1	0.0791	FALSE	462	80	0	856	0	FALSE	ACH-000196
HCC1599_BREAST	PPIG--PDK1	6	5	PPIG	7639	chr2:170471234:+	PDK1	48062	chr2:173488764:+	ONLY_REF_SPLICE	YES	39	2	0.22	0.85	0.0593	0.0494	PPIG->chr2:170440850-170497916:+,peptidylprolyl_isomerase_G,PDK1->ArcherDX_panel,FoundationOne_panel,chr2:173420101-173489823:+,pyruvate_dehydrogenase_kinase_1	HCC1599_BREAST	0.22	0.85	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	ANXA2--C15orf60	7	0	ANXA2	11842	chr15:60678227:-	C15orf60	34771	chr15:73832826:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0692	0	ANXA2->annexin_A2,chr15:60639333-60695082:-,C15orf60->chr15:73735499-73852355:+	HCC1599_BREAST	1	1	0.0692	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	PLXDC1--TAF13	7	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0692	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCC1599_BREAST	1	1	0.0692	TRUE	7	10	0	216	0	FALSE	ACH-000196
HCC1599_BREAST	RP3-428L16.1--SNRPE	7	0	RP3-428L16.1	3519	chr6:161380096:+	SNRPE	11374	chr1:203839005:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0692	0	RP3-428L16.1->chr6:161352112-161390803:+,SNRPE->chr1:203830731-203839678:+,small_nuclear_ribonucleoprotein_polypeptide_E	HCC1599_BREAST	1	1	0.0692	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	UHRF1--FAM161A	6	4	UHRF1	7807	chr19:4932968:+	FAM161A	24689	chr2:62069533:-	INCL_NON_REF_SPLICE	YES	32	6	0.24	0.62	0.0593	0.0395	UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1,FAM161A->chr2:62051989-62081278:-,family_with_sequence_similarity_161_member_A	HCC1599_BREAST	0.24	0.62	0.0988	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	ZC3H11A--RP3-428L16.1	7	0	ZC3H11A	1122	chr1:203764903:+	RP3-428L16.1	29852	chr6:161377599:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0692	0	ZC3H11A->chr1:203764782-203823252:+,zinc_finger_CCCH-type_containing_11A,RP3-428L16.1->chr6:161352112-161390803:+	HCC1599_BREAST	1	1	0.0692	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	LIN54--SCD5	6	3	LIN54	5321	chr4:83900036:-	SCD5	28868	chr4:83602065:-	ONLY_REF_SPLICE	YES	14	18	0.39	0.33	0.0593	0.0297	LIN54->chr4:83831126-83934079:-,lin-54_DREAM_MuvB_core_complex_component,SCD5->chr4:83550692-83720010:-,stearoyl-CoA_desaturase_5	HCC1599_BREAST	0.33	0.39	0.089	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	PPIG--PDK1	5	6	PPIG	7639	chr2:170471234:+	PDK1	46983	chr2:173486152:+	ONLY_REF_SPLICE	YES	39	1	0.22	0.92	0.0494	0.0593	PPIG->chr2:170440850-170497916:+,peptidylprolyl_isomerase_G,PDK1->ArcherDX_panel,FoundationOne_panel,chr2:173420101-173489823:+,pyruvate_dehydrogenase_kinase_1	HCC1599_BREAST	0.22	0.92	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	PCAT1--RP11-382A18.2	6	1	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0593	0.0099	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	HCC1599_BREAST	1	1	0.0692	TRUE	4	84	1	46	0	FALSE	ACH-000196
HCC1599_BREAST	TRPS1--RAD21	6	1	TRPS1	4117	chr8:116680772:-	RAD21	29644	chr8:117879000:-	ONLY_REF_SPLICE	YES	196	299	0.03	0.02	0.0593	0.0099	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-	HCC1599_BREAST	0.02	0.03	0.0692	TRUE	1	4	0	1	0	FALSE	ACH-000196
HCC1599_BREAST	PPP1R9B--DPH7	6	0	PPP1R9B	2484	chr17:48226508:-	DPH7	15641	chr9:140472055:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0593	0	PPP1R9B->chr17:48211104-48227991:-,protein_phosphatase_1_regulatory_subunit_9B,DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7	HCC1599_BREAST	1	1	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	NRIP1--AF127936.7	5	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0494	0.0198	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1599_BREAST	0.7	1	0.0692	FALSE	292	1546	117	613	0	FALSE	ACH-000196
HCC1599_BREAST	ZC3H11A--RP3-428L16.1	5	1	ZC3H11A	1141	chr1:203764922:+	RP3-428L16.1	29852	chr6:161377599:+	INCL_NON_REF_SPLICE	YES	92	0	0.06	1	0.0494	0.0099	ZC3H11A->chr1:203764782-203823252:+,zinc_finger_CCCH-type_containing_11A,RP3-428L16.1->chr6:161352112-161390803:+	HCC1599_BREAST	0.06	1	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	DSCR3--TTC3	5	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0494	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	HCC1599_BREAST	1	1	0.0494	TRUE	0	9	0	44	1	FALSE	ACH-000196
HCC1599_BREAST	RP11-155G15.2--RP11-1E3.1	5	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0494	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HCC1599_BREAST	1	1	0.0494	FALSE	46	201	11	112	0	FALSE	ACH-000196
HCC1599_BREAST	ZC3H11A--RP3-428L16.1	5	0	ZC3H11A	1122	chr1:203764903:+	RP3-428L16.1	30986	chr6:161380001:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0494	0	ZC3H11A->chr1:203764782-203823252:+,zinc_finger_CCCH-type_containing_11A,RP3-428L16.1->chr6:161352112-161390803:+	HCC1599_BREAST	1	1	0.0494	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	AUTS2--NOL4	4	3	AUTS2	7553	chr7:69599557:+	NOL4	58748	chr18:31463388:-	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0395	0.0297	AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+,NOL4->chr18:31431064-31804916:-,nucleolar_protein_4	HCC1599_BREAST	0.78	1	0.0692	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	NPM1P24--SET	4	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	YES	51	1547	0.09	0	0.0395	0.0099	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1599_BREAST	0	0.09	0.0494	FALSE	0	0	0	434	0	FALSE	ACH-000196
HCC1599_BREAST	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	51	1419	0.09	0	0.0395	0.0099	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1599_BREAST	0	0.09	0.0494	FALSE	0	0	0	434	0	FALSE	ACH-000196
HCC1599_BREAST	UHRF1--FAM161A	4	1	UHRF1	7807	chr19:4932968:+	FAM161A	29773	chr2:62063244:-	ONLY_REF_SPLICE	YES	32	20	0.14	0.2	0.0395	0.0099	UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1,FAM161A->chr2:62051989-62081278:-,family_with_sequence_similarity_161_member_A	HCC1599_BREAST	0.14	0.2	0.0494	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	MT-TA--MT-TN	4	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1599_BREAST	1	1	0.0395	FALSE	369	2501	205	193	0	FALSE	ACH-000196
HCC1599_BREAST	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1599_BREAST	1	1	0.0395	TRUE	0	0	0	434	0	FALSE	ACH-000196
HCC1599_BREAST	ANXA2--C15orf60	1	10	ANXA2	15528	chr15:60674541:-	C15orf60	34771	chr15:73832826:+	ONLY_REF_SPLICE	NO	2075	3	0.01	0.79	0.0099	0.0988	ANXA2->annexin_A2,chr15:60639333-60695082:-,C15orf60->chr15:73735499-73852355:+	HCC1599_BREAST	0.01	0.79	0.1087	TRUE	0	0	0	1	0	FALSE	ACH-000196
HCC1599_BREAST	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	15	1	0.25	0.0297	0.0198	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1599_BREAST	0.25	1	0.0495	TRUE	458	1351	185	561	0	FALSE	ACH-000196
HCC1599_BREAST	CCT6P3--RP11-172F10.1	3	1	CCT6P3	1212	chr7:64498943:+	RP11-172F10.1	19129	chr18:4775122:-	ONLY_REF_SPLICE	YES	11	0	0.27	1	0.0297	0.0099	CCT6P3->chaperonin_containing_TCP1_subunit_6_pseudogene_3,chr7:64498732-64535091:+,RP11-172F10.1->chr18:4775053-5004536:-	HCC1599_BREAST	0.27	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	CCT6P3--RP11-172F10.1	3	1	CCT6P3	1212	chr7:64498943:+	RP11-172F10.1	18068	chr18:4807994:-	ONLY_REF_SPLICE	YES	11	0	0.27	1	0.0297	0.0099	CCT6P3->chaperonin_containing_TCP1_subunit_6_pseudogene_3,chr7:64498732-64535091:+,RP11-172F10.1->chr18:4775053-5004536:-	HCC1599_BREAST	0.27	1	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	CDH13--RP11-22H5.2	3	0	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	HCC1599_BREAST	1	1	0.0297	FALSE	14	31	0	36	0	FALSE	ACH-000196
HCC1599_BREAST	FTO--RAB9B	3	0	FTO	1267	chr16:53738141:+	RAB9B	32701	chrX:103082008:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	FTO->chr16:53737875-54155853:+,fat_mass_and_obesity_associated,RAB9B->RAB9B,_member_RAS_oncogene_family,chrX:103077252-103087158:-	HCC1599_BREAST	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1599_BREAST	1	1	0.0297	TRUE	0	0	0	434	0	FALSE	ACH-000196
HCC1599_BREAST	PPIG--PDK1	3	0	PPIG	7639	chr2:170471234:+	PDK1	49086	chr2:173489788:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	PPIG->chr2:170440850-170497916:+,peptidylprolyl_isomerase_G,PDK1->ArcherDX_panel,FoundationOne_panel,chr2:173420101-173489823:+,pyruvate_dehydrogenase_kinase_1	HCC1599_BREAST	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	RP11-123O10.4--GRIP1	2	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0.0395	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1599_BREAST	1	1	0.0593	FALSE	9	21	5	22	0	FALSE	ACH-000196
HCC1599_BREAST	RPS3--STYX	3	0	RPS3	2292	chr11:75111821:+	STYX	23180	chr14:53237751:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,STYX->chr14:53196898-53241716:+,serine/threonine/tyrosine_interacting_protein	HCC1599_BREAST	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	UHRF1--FAM161A	2	2	UHRF1	7807	chr19:4932968:+	FAM161A	25966	chr2:62067716:-	ONLY_REF_SPLICE	YES	32	20	0.11	0.17	0.0198	0.0198	UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1,FAM161A->chr2:62051989-62081278:-,family_with_sequence_similarity_161_member_A	HCC1599_BREAST	0.11	0.17	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	CASZ1--SPSB2	2	1	CASZ1	2244	chr1:10820758:-	SPSB2	34521	chr12:6991451:-	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0198	0.0099	CASZ1->castor_zinc_finger_1,chr1:10696661-10856707:-,SPSB2->chr12:6980099-6998522:-,splA/ryanodine_receptor_domain_and_SOCS_box_containing_2	HCC1599_BREAST	0.3	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	RP4-617C6.1--RP11-286B14.1	2	1	RP4-617C6.1	1638	chr1:95940930:+	RP11-286B14.1	12916	chr1:96004138:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0.0099	NEIGHBORS[30760],RP4-617C6.1->chr1:95940293-95944912:+,RP11-286B14.1->chr1:95975672-96247898:+	HCC1599_BREAST	1	1	0.0297	FALSE	0	0	0	2	0	FALSE	ACH-000196
HCC1599_BREAST	SEPT10--SBSN	2	1	SEPT10	1409	chr2:110371375:-	SBSN	22998	chr19:36014435:-	ONLY_REF_SPLICE	YES	85	0	0.03	1	0.0198	0.0099	SEPT10->chr2:110300559-110371783:-,septin_10,SBSN->chr19:36014269-36019253:-,suprabasin	HCC1599_BREAST	0.03	1	0.0297	TRUE	0	0	0	1	0	FALSE	ACH-000196
HCC1599_BREAST	ZYG11B--SELRC1	2	1	ZYG11B	1230	chr1:53192355:+	SELRC1	25249	chr1:53158539:-	ONLY_REF_SPLICE	YES	14	151	0.18	0.02	0.0198	0.0099	LOCAL_INVERSION:+:-:[28088],ZYG11B->chr1:53192126-53293014:+,zyg-11_family_member_B,_cell_cycle_regulator,SELRC1->chr1:53152508-53164038:-	HCC1599_BREAST	0.02	0.18	0.0297	TRUE	0	0	0	1	0	FALSE	ACH-000196
HCC1599_BREAST	ARFGEF2--ZFAS1	2	0	ARFGEF2	1121	chr20:47538547:+	ZFAS1	48751	chr20:47905582:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+	HCC1599_BREAST	1	1	0.0198	TRUE	0	1	0	2	0	TRUE	ACH-000196
HCC1599_BREAST	AZIN1--LAPTM4B	2	0	AZIN1	7535	chr8:103870241:-	LAPTM4B	26389	chr8:98817581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	CD44--NHSL1	2	0	CD44	6502	chr11:35211612:+	NHSL1	37403	chr6:138817508:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,NHSL1->NHS_like_1,chr6:138743180-139013708:-	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	CHST8--ZNF573	2	0	CHST8	1342	chr19:34113202:+	ZNF573	28916	chr19:38231095:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CHST8->carbohydrate_sulfotransferase_8,chr19:34112861-34264414:+,ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	CHST8--ZNF573	2	0	CHST8	1342	chr19:34113202:+	ZNF573	22983	chr19:38262336:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CHST8->carbohydrate_sulfotransferase_8,chr19:34112861-34264414:+,ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	EXD3--EHMT1	2	0	EXD3	1149	chr9:140317566:-	EHMT1	37413	chr9:140611078:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1},EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	3	0	TRUE	ACH-000196
HCC1599_BREAST	LRRC16A--TRIM44	2	0	LRRC16A	2856	chr6:25285137:+	TRIM44	47877	chr11:35706807:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	LRRC16A->chr6:25279306-25620758:+,leucine_rich_repeat_containing_16A,TRIM44->chr11:35684353-35829775:+,tripartite_motif_containing_44	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	LYPLAL1--TGFB2	2	0	LYPLAL1	3277	chr1:219352588:+	TGFB2	16672	chr1:218607424:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,TGFB2->Oncogene{Bushman},chr1:218519577-218617961:+,transforming_growth_factor_beta_2	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	PPP1R12C--PTMS	2	0	PPP1R12C	8950	chr19:55610152:-	PTMS	21777	chr12:6878769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,PTMS->chr12:6874682-6880116:+,parathymosin	HCC1599_BREAST	1	1	0.0198	TRUE	0	1	0	2	1	TRUE	ACH-000196
HCC1599_BREAST	TNKS2--IDE	2	0	TNKS2	15381	chr10:93602148:+	IDE	64854	chr10:94214296:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	TNKS2->chr10:93558069-93625033:+,tankyrase_2,IDE->chr10:94211441-94333833:-,insulin_degrading_enzyme	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	UHRF1--FAM161A	1	4	UHRF1	7807	chr19:4932968:+	FAM161A	24727	chr2:62069495:-	ONLY_REF_SPLICE	YES	32	6	0.14	0.45	0.0099	0.0395	UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1,FAM161A->chr2:62051989-62081278:-,family_with_sequence_similarity_161_member_A	HCC1599_BREAST	0.14	0.45	0.0494	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	VMP1--BRF1	2	0	VMP1	1557	chr17:57785109:+	BRF1	49675	chr14:105695250:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,BRF1->BRF1,_RNA_polymerase_III_transcription_initiation_factor_90_kDa_subunit,chr14:105675623-105781926:-	HCC1599_BREAST	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	EXOC7--CYTH1	1	3	EXOC7	7025	chr17:74093877:-	CYTH1	33670	chr17:76698686:-	ONLY_REF_SPLICE	YES	84	21	0.05	0.16	0.0099	0.0297	{Klijn_CCL:Breast=1},EXOC7->chr17:74077087-74117657:-,exocyst_complex_component_7,CYTH1->chr17:76670130-76778379:-,cytohesin_1	HCC1599_BREAST	0.05	0.16	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	TRPS1--RAD21	1	2	TRPS1	13825	chr8:116599228:-	RAD21	29644	chr8:117879000:-	ONLY_REF_SPLICE	NO	195	299	0.02	0.01	0.0099	0.0198	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-	HCC1599_BREAST	0.01	0.02	0.0297	FALSE	0	0	0	1	0	FALSE	ACH-000196
HCC1599_BREAST	AUTS2--NOL4	1	1	AUTS2	5415	chr7:69364484:+	NOL4	58748	chr18:31463388:-	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0099	0.0099	AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+,NOL4->chr18:31431064-31804916:-,nucleolar_protein_4	HCC1599_BREAST	0.67	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	CYB561D2--RP11-24C3.2	1	1	CYB561D2	1866	chr3:50388991:+	RP11-24C3.2	11065	chr3:48482272:-	ONLY_REF_SPLICE	YES	32	0	0.06	1	0.0099	0.0099	CYB561D2->chr3:50388126-50395891:+,cytochrome_b561_family_member_D2,RP11-24C3.2->chr3:48481762-48488060:-	HCC1599_BREAST	0.06	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	DIP2C--ZMYND11	1	1	DIP2C	31439	chr10:394581:-	ZMYND11	52575	chr10:225934:+	ONLY_REF_SPLICE	YES	5	21	0.29	0.09	0.0099	0.0099	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[19553],DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	HCC1599_BREAST	0.09	0.29	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000196
HCC1599_BREAST	EXOC7--CYTH1	1	1	EXOC7	5543	chr17:74097352:-	CYTH1	31134	chr17:76705814:-	ONLY_REF_SPLICE	NO	68	7	0.03	0.22	0.0099	0.0099	{Klijn_CCL:Breast=1},EXOC7->chr17:74077087-74117657:-,exocyst_complex_component_7,CYTH1->chr17:76670130-76778379:-,cytohesin_1	HCC1599_BREAST	0.03	0.22	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000196
HCC1599_BREAST	RP4-617C6.1--RP11-286B14.1	1	1	RP4-617C6.1	1638	chr1:95940930:+	RP11-286B14.1	14027	chr1:96242703:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0099	0.0099	NEIGHBORS[30760],RP4-617C6.1->chr1:95940293-95944912:+,RP11-286B14.1->chr1:95975672-96247898:+	HCC1599_BREAST	1	1	0.0198	FALSE	0	0	1	2	0	FALSE	ACH-000196
EW8_BONE	EWSR1--FLI1	137	92	EWSR1	11554	chr22:29683123:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	354	3	0.39	0.99	1.7141	1.1511	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	EW8_BONE	0.39	0.99	2.8652	TRUE	0	0	0	6	0	TRUE	ACH-000499
EW8_BONE	TRHDE--RALYL	84	41	TRHDE	10806	chr12:72771901:+	RALYL	47467	chr8:85799839:+	ONLY_REF_SPLICE	YES	47	0	0.73	1	1.051	0.513	TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	EW8_BONE	0.73	1	1.564	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	KANSL1--ARL17B	80	50	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	63	126	0.67	0.51	1.0009	0.6256	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	EW8_BONE	0.51	0.67	1.6265	TRUE	181	1564	124	196	0	FALSE	ACH-000499
EW8_BONE	AP000525.9--LA16c-60G3.6	75	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9384	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	EW8_BONE	1	1	0.9384	TRUE	0	42	0	133	42	FALSE	ACH-000499
EW8_BONE	AL589743.1--RP11-536C10.17	74	1	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	11	0	0.87	1	0.9259	0.0125	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	EW8_BONE	0.87	1	0.9384	TRUE	0	33	0	45	33	FALSE	ACH-000499
EW8_BONE	ZNF654--HMGB2	64	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8008	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	EW8_BONE	1	1	0.8008	TRUE	0	0	0	518	0	FALSE	ACH-000499
EW8_BONE	MT-TA--MT-TC	50	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6256	0.05	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EW8_BONE	1	1	0.6756	FALSE	462	80	0	856	0	FALSE	ACH-000499
EW8_BONE	TIMM23B--LINC00843	41	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.513	0.2377	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EW8_BONE	1	1	0.7507	TRUE	508	994	45	981	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	7	131	MT-ND4	1724	chrM:11483:+	MT-ND4L	5482	chrM:10573:+	INCL_NON_REF_SPLICE	YES	9151	0	0.01	1	0.0876	1.639	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.01	1	1.7266	FALSE	344	827	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	8	118	MT-ND4	1270	chrM:11029:+	MT-ND4L	5496	chrM:10587:+	INCL_NON_REF_SPLICE	YES	278	1	0.31	0.99	0.1001	1.4764	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.31	0.99	1.5765	FALSE	344	827	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	4	131	MT-ND4	1741	chrM:11500:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	10194	0	0.01	1	0.05	1.639	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.01	1	1.689	FALSE	344	827	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	3	133	MT-ND4	1984	chrM:11743:+	MT-ND4L	5475	chrM:10566:+	INCL_NON_REF_SPLICE	YES	22679	0	0.01	1	0.0375	1.6641	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.01	1	1.7016	FALSE	344	827	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-CO1--MT-ND2	36	0	MT-CO1	1653	chrM:6556:+	MT-ND2	6453	chrM:5380:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4504	0	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EW8_BONE	1	1	0.4504	FALSE	55	19	1	13	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	3	128	MT-ND4	1754	chrM:11513:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	YES	10997	2	0.01	0.98	0.0375	1.6015	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.01	0.98	1.639	FALSE	344	827	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	5	118	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	144	0	0.46	1	0.0626	1.4764	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.46	1	1.539	FALSE	344	827	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	33	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19977	12	0	0.74	0.4129	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.74	0.4254	FALSE	230	198	14	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	4	117	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	NO	113	2	0.52	0.98	0.05	1.4639	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.52	0.98	1.5139	FALSE	344	826	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	3	118	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	147	0	0.45	1	0.0375	1.4764	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.45	1	1.5139	FALSE	344	827	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	3	117	MT-ND4	1192	chrM:10951:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	NO	113	2	0.52	0.98	0.0375	1.4639	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.52	0.98	1.5014	FALSE	344	826	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-ND5--MT-ATP8	28	11	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	6046	12	0.01	0.76	0.3503	0.1376	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0.01	0.76	0.4879	FALSE	43	37	8	105	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	6	90	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	12957	1	0.01	0.99	0.0751	1.1261	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.01	0.99	1.2012	FALSE	344	827	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	4	82	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	18	2	0.83	0.98	0.05	1.026	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.83	0.98	1.076	FALSE	344	821	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-ND5--MT-ATP8	19	22	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	6	1	0.87	0.98	0.2377	0.2753	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0.87	0.98	0.513	FALSE	43	37	8	105	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	4	81	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	399	1	0.18	0.99	0.05	1.0135	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.18	0.99	1.0635	FALSE	344	827	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-ATP6--MT-CO1	23	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	13678	32704	0	0	0.2878	0.025	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EW8_BONE	0	0	0.3128	FALSE	183	104	9	328	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	22	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	19801	7	0	0.77	0.2753	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.77	0.2878	FALSE	230	193	14	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND5--MT-ATP8	18	9	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8404	110	0	0.2	0.2252	0.1126	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.2	0.3378	FALSE	43	37	8	105	0	FALSE	ACH-000499
EW8_BONE	MT-ATP6--MT-CO1	19	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	13349	31800	0	0	0.2377	0.025	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EW8_BONE	0	0	0.2627	FALSE	183	104	9	328	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	9	42	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	8	15	0.86	0.77	0.1126	0.5255	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.77	0.86	0.6381	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	9	41	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	8	78	0.86	0.39	0.1126	0.513	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.39	0.86	0.6256	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	6	43	MT-CO3	1153	chrM:9359:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	9	15	0.84	0.77	0.0751	0.538	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.77	0.84	0.6131	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	13	15	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	25398	110	0	0.2	0.1627	0.1877	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.2	0.3504	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	4	50	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15	0	0.78	1	0.05	0.6256	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.78	1	0.6756	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	8	30	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	17373	0	0	1	0.1001	0.3754	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0	1	0.4755	FALSE	328	800	43	304	0	FALSE	ACH-000499
EW8_BONE	SDHA--OXCT1	13	9	SDHA	5842	chr5:226162:+	OXCT1	27774	chr5:41853656:-	ONLY_REF_SPLICE	YES	414	119	0.05	0.16	0.1627	0.1126	SDHA->ArcherDX_panel,FoundationOne_panel,chr5:218356-256815:+,succinate_dehydrogenase_complex_flavoprotein_subunit_A,OXCT1->3-oxoacid_CoA-transferase_1,chr5:41730167-41870621:-	EW8_BONE	0.05	0.16	0.2753	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	3	47	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	13	70	0.79	0.42	0.0375	0.5881	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.42	0.79	0.6256	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	3	46	MT-CO3	1149	chrM:9355:+	MT-ATP6	4916	chrM:8658:+	INCL_NON_REF_SPLICE	YES	10	35	0.83	0.58	0.0375	0.5755	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.58	0.83	0.613	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	6	34	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	10	1	0.8	0.0751	0.4254	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.8	1	0.5005	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	3	45	MT-CO3	1153	chrM:9359:+	MT-ATP6	4968	chrM:8710:+	INCL_NON_REF_SPLICE	YES	9	37	0.84	0.56	0.0375	0.563	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.56	0.84	0.6005	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	5	36	MT-ND4	1039	chrM:10798:+	MT-ND4L	5496	chrM:10587:+	INCL_NON_REF_SPLICE	YES	5	1	0.89	0.98	0.0626	0.4504	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.89	0.98	0.513	FALSE	344	821	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	3	43	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	NO	14	15	0.77	0.75	0.0375	0.538	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.75	0.77	0.5755	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-ND6--MT-TE	12	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.1501	0.0876	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EW8_BONE	0.9	1	0.2377	FALSE	499	1288	110	792	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	3	42	MT-CO3	1138	chrM:9344:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	8	25	0.85	0.64	0.0375	0.5255	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.64	0.85	0.563	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	13	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19801	12	0	0.54	0.1627	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.54	0.1752	FALSE	230	193	14	283	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	4	36	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	3	10	0.93	0.8	0.05	0.4504	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.8	0.93	0.5004	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	10	12	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	26419	1724	0	0.01	0.1251	0.1501	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.01	0.2752	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	GTDC1--R3HDM1	11	5	GTDC1	1130	chr2:145090006:-	R3HDM1	62757	chr2:136418840:+	ONLY_REF_SPLICE	YES	3	131	0.84	0.11	0.1376	0.0626	GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+	EW8_BONE	0.11	0.84	0.2002	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	3	36	MT-CO3	1090	chrM:9296:+	MT-ATP6	5050	chrM:8792:+	INCL_NON_REF_SPLICE	YES	0	32	1	0.55	0.0375	0.4504	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.55	1	0.4879	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	3	36	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	0	29	1	0.57	0.0375	0.4504	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.57	1	0.4879	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	3	33	MT-CO3	1085	chrM:9291:+	MT-ATP6	5314	chrM:9056:+	INCL_NON_REF_SPLICE	NO	0	11	1	0.77	0.0375	0.4129	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.77	1	0.4504	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	4	29	MT-ND4	2258	chrM:12017:+	MT-ATP8	5406	chrM:8393:+	INCL_NON_REF_SPLICE	YES	2430	0	0.01	1	0.05	0.3628	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0.01	1	0.4128	FALSE	216	209	16	281	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	7	17	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	26215	1	0	0.96	0.0876	0.2127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.96	0.3003	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	3	32	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	15	1	0.7	0.0375	0.4004	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.7	1	0.4379	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	8	12	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	27037	12	0	0.62	0.1001	0.1501	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.62	0.2502	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1376	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	EW8_BONE	1	1	0.1376	TRUE	0	0	0	434	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	4	27	MT-CO3	1061	chrM:9267:+	MT-ATP6	5343	chrM:9085:+	INCL_NON_REF_SPLICE	YES	0	8	1	0.79	0.05	0.3378	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.79	1	0.3878	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	6	19	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2984	0	0.01	1	0.0751	0.2377	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.01	1	0.3128	FALSE	344	827	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-ND6--MT-TE	9	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1126	0.0876	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EW8_BONE	1	1	0.2002	FALSE	499	1288	110	792	0	FALSE	ACH-000499
EW8_BONE	MT-ND6--MT-TE	9	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1126	0.0751	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EW8_BONE	1	1	0.1877	FALSE	499	1288	110	792	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	3	29	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0375	0.3628	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.91	1	0.4003	FALSE	344	821	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	6	16	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	26599	1	0	0.96	0.0751	0.2002	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.96	0.2753	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	8	8	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	28876	1	0	0.94	0.1001	0.1001	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.94	0.2002	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	5	20	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3522	110	0.01	0.19	0.0626	0.2502	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0.01	0.19	0.3128	FALSE	216	209	16	281	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	3	28	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	12270	0	0	1	0.0375	0.3503	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0	1	0.3878	FALSE	344	827	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-ND5--MT-ATP8	9	4	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	9334	3	0	0.81	0.1126	0.05	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.81	0.1626	FALSE	41	30	6	102	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	3	27	MT-ND4	1471	chrM:11230:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1734	0	0.02	1	0.0375	0.3378	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.02	1	0.3753	FALSE	344	827	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	5	18	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	144	0	0.14	1	0.0626	0.2252	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.14	1	0.2878	FALSE	344	826	44	306	0	FALSE	ACH-000499
EW8_BONE	AC104389.28--HBE1	6	13	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	5	0	0.79	1	0.0751	0.1627	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	EW8_BONE	0.79	1	0.2378	TRUE	0	48	0	65	48	FALSE	ACH-000499
EW8_BONE	MT-ATP6--MT-CO1	7	9	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4546	33117	0	0	0.0876	0.1126	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EW8_BONE	0	0	0.2002	FALSE	183	104	9	328	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	7	9	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	28877	0	0	1	0.0876	0.1126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	1	0.2002	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	9	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19954	110	0	0.08	0.1126	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.08	0.1251	FALSE	230	198	14	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	9	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	23500	12	0	0.45	0.1126	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.45	0.1251	FALSE	231	205	14	283	0	FALSE	ACH-000499
EW8_BONE	C15orf57--CBX3	7	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	71	17	0.17	0.47	0.0876	0.1001	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EW8_BONE	0.17	0.47	0.1877	TRUE	267	562	48	632	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	5	16	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	26425	0	0	1	0.0626	0.2002	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	1	0.2628	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	RP11-680G10.1--GSE1	8	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	18	1	0.38	0.1001	0.0375	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	EW8_BONE	0.38	1	0.1376	TRUE	458	1351	185	561	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	5	14	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	26832	1	0	0.95	0.0626	0.1752	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.95	0.2378	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	N4BP2L1--SERTM1	6	10	N4BP2L1	1275	chr13:33002041:-	SERTM1	17401	chr13:37269043:+	ONLY_REF_SPLICE	YES	20	37	0.44	0.3	0.0751	0.1251	N4BP2L1->NEDD4_binding_protein_2-like_1,chr13:32974861-33002315:-,SERTM1->chr13:37248049-37271976:+,serine_rich_and_transmembrane_domain_containing_1	EW8_BONE	0.3	0.44	0.2002	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	MT-CO1--MT-ND2	5	13	MT-CO1	1642	chrM:6545:+	MT-ND2	5737	chrM:4664:+	INCL_NON_REF_SPLICE	YES	32087	13287	0	0	0.0626	0.1627	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EW8_BONE	0	0	0.2253	FALSE	55	19	1	13	0	FALSE	ACH-000499
EW8_BONE	MT-ND6--MT-TE	5	13	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0626	0.1627	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EW8_BONE	0.9	1	0.2253	FALSE	499	1288	110	792	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	5	12	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.85	0.0626	0.1501	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.85	1	0.2127	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-TA--MT-TC	7	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0876	0.05	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EW8_BONE	1	1	0.1376	FALSE	462	80	0	856	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	3	19	MT-CO3	1038	chrM:9244:+	MT-ATP6	5225	chrM:8967:+	INCL_NON_REF_SPLICE	YES	0	29	1	0.43	0.0375	0.2377	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.43	1	0.2752	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	4	15	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	26645	1	0	0.95	0.05	0.1877	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.95	0.2377	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	3	19	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12270	0	0	1	0.0375	0.2377	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0	1	0.2752	FALSE	344	827	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	3	18	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	140	0	0.13	1	0.0375	0.2252	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.13	1	0.2627	FALSE	344	826	44	306	0	FALSE	ACH-000499
EW8_BONE	PRKCE--CIAO1	7	2	PRKCE	13762	chr2:46070202:+	CIAO1	43417	chr2:96933059:+	ONLY_REF_SPLICE	YES	2	917	0.82	0.01	0.0876	0.025	PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,CIAO1->chr2:96931870-96939087:+,cytosolic_iron-sulfur_assembly_component_1	EW8_BONE	0.01	0.82	0.1126	TRUE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	RP11-96H19.1--RP11-446N19.1	3	18	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.0375	0.2252	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EW8_BONE	0.91	1	0.2627	FALSE	407	2205	196	549	0	FALSE	ACH-000499
EW8_BONE	MBNL3--FUNDC1	7	1	MBNL3	9287	chrX:131524875:-	FUNDC1	28650	chrX:44401347:-	ONLY_REF_SPLICE	YES	0	23	1	0.26	0.0876	0.0125	MBNL3->chrX:131503345-131623996:-,muscleblind_like_splicing_regulator_3,FUNDC1->FUN14_domain_containing_1,chrX:44382885-44402247:-	EW8_BONE	0.26	1	0.1001	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	3	17	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21649	110	0	0.15	0.0375	0.2127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.15	0.2502	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	3	16	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	27021	0	0	1	0.0375	0.2002	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	1	0.2377	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	4	11	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	25398	2116	0	0.01	0.05	0.1376	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.01	0.1876	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	3	15	MT-ND4	1903	chrM:11662:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	NO	24711	264	0	0.06	0.0375	0.1877	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.06	0.2252	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND5--MT-ATP8	3	15	MT-ND5	2290	chrM:13626:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5499	1	0	0.95	0.0375	0.1877	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.95	0.2252	FALSE	43	37	8	105	0	FALSE	ACH-000499
EW8_BONE	RP11-444D3.1--SOX5	6	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0751	0.025	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	EW8_BONE	0.89	1	0.1001	TRUE	477	1352	189	275	0	FALSE	ACH-000499
EW8_BONE	RP11-96H19.1--RP11-446N19.1	2	18	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.025	0.2252	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EW8_BONE	0.91	1	0.2502	FALSE	515	4851	409	746	0	FALSE	ACH-000499
EW8_BONE	MT-ATP6--MT-CO1	4	9	MT-ATP6	1537	chrM:9063:+	MT-CO1	5319	chrM:6541:+	INCL_NON_REF_SPLICE	YES	6207	31749	0	0	0.05	0.1126	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EW8_BONE	0	0	0.1626	FALSE	183	104	9	328	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	3	13	MT-CO3	1123	chrM:9329:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	YES	6	3	0.73	0.84	0.0375	0.1627	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.73	0.84	0.2002	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	4	9	MT-ND4	1533	chrM:11292:+	MT-ATP8	5479	chrM:8466:+	INCL_NON_REF_SPLICE	YES	32048	8	0	0.62	0.05	0.1126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.62	0.1626	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	4	9	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	29880	0	0	1	0.05	0.1126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	1	0.1626	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	31	1	0.18	0.0751	0.0125	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	EW8_BONE	0.18	1	0.0876	TRUE	465	1949	224	605	0	FALSE	ACH-000499
EW8_BONE	MT-ND5--MT-ATP8	3	12	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	5027	1	0	0.94	0.0375	0.1501	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.94	0.1876	FALSE	43	37	8	105	0	FALSE	ACH-000499
EW8_BONE	RP11-96H19.1--RP11-446N19.1	1	20	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	0	0.95	1	0.0125	0.2502	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EW8_BONE	0.95	1	0.2627	FALSE	467	2173	244	435	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	4	7	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	150	0	0.07	1	0.05	0.0876	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.07	1	0.1376	FALSE	344	827	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	5	2	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	27836	1724	0	0	0.0626	0.025	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0	0.0876	FALSE	231	205	14	283	0	FALSE	ACH-000499
EW8_BONE	MT-ATP6--MT-CO1	4	5	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	14758	0	0	1	0.05	0.0626	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EW8_BONE	0	1	0.1126	FALSE	182	97	9	327	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	5	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	19506	12	0	0.33	0.0626	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.33	0.0751	FALSE	230	193	14	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	3	9	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	28877	0	0	1	0.0375	0.1126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	1	0.1501	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND5--MT-ATP8	3	9	MT-ND5	2150	chrM:13486:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7806	110	0	0.1	0.0375	0.1126	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.1	0.1501	FALSE	43	37	8	105	0	FALSE	ACH-000499
EW8_BONE	MT-TA--MT-TC	4	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0.0626	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EW8_BONE	1	1	0.1126	FALSE	462	80	0	856	0	FALSE	ACH-000499
EW8_BONE	RP11-120D5.1--MID1	5	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	4	0.75	0.6	0.0626	0.0125	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	EW8_BONE	0.6	0.75	0.0751	FALSE	16	356	14	466	0	FALSE	ACH-000499
EW8_BONE	SERF2--CTC-575D19.1	5	1	SERF2	6109	chr15:44085993:+	CTC-575D19.1	16124	chr5:168043316:+	INCL_NON_REF_SPLICE	YES	1858	0	0	1	0.0626	0.0125	SERF2->chr15:44069285-44094787:+,small_EDRK-rich_factor_2,CTC-575D19.1->chr5:168043317-168044059:+	EW8_BONE	0	1	0.0751	FALSE	0	0	0	3	0	FALSE	ACH-000499
EW8_BONE	C15orf57--CBX3	3	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	70	18	0.14	0.38	0.0375	0.1001	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EW8_BONE	0.14	0.38	0.1376	TRUE	267	562	48	632	0	FALSE	ACH-000499
EW8_BONE	MT-CO1--MT-ND2	4	4	MT-CO1	1592	chrM:6495:+	MT-ND2	5780	chrM:4707:+	INCL_NON_REF_SPLICE	YES	28180	15781	0	0	0.05	0.05	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EW8_BONE	0	0	0.1	FALSE	55	19	1	13	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	3	8	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	28979	1	0	0.92	0.0375	0.1001	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.92	0.1376	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	5	0	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0626	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	1	1	0.0626	FALSE	344	821	44	306	0	FALSE	ACH-000499
EW8_BONE	GTDC1--R3HDM1	4	3	GTDC1	1130	chr2:145090006:-	R3HDM1	63881	chr2:136432902:+	ONLY_REF_SPLICE	YES	3	118	0.7	0.06	0.05	0.0375	GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+	EW8_BONE	0.06	0.7	0.0875	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	MT-CO1--MT-ND2	4	3	MT-CO1	1603	chrM:6506:+	MT-ND2	5988	chrM:4915:+	INCL_NON_REF_SPLICE	YES	28465	20514	0	0	0.05	0.0375	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EW8_BONE	0	0	0.0875	FALSE	55	19	1	13	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	4	3	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	8	1	0.47	0.88	0.05	0.0375	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.47	0.88	0.0875	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	3	7	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	31499	879	0	0.01	0.0375	0.0876	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.01	0.1251	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	3	7	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	343	0	0.03	1	0.0375	0.0876	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.03	1	0.1251	FALSE	344	827	44	306	0	FALSE	ACH-000499
EW8_BONE	ANKRD36--CPED1	4	2	ANKRD36	46849	chr2:97890616:+	CPED1	91027	chr7:120906281:+	ONLY_REF_SPLICE	YES	18	0	0.25	1	0.05	0.025	ANKRD36->ankyrin_repeat_domain_36,chr2:97779233-97930258:+,CPED1->cadherin_like_and_PC-esterase_domain_containing_1,chr7:120628731-120937498:+	EW8_BONE	0.25	1	0.075	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	EWSR1--FLI1	2	10	EWSR1	10342	chr22:29678546:+	FLI1	40528	chr11:128679052:+	ONLY_REF_SPLICE	YES	520	28	0.02	0.3	0.025	0.1251	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	EW8_BONE	0.02	0.3	0.1501	TRUE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	KANSL1--ARL17B	1	14	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	63	76	0.19	0.16	0.0125	0.1752	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	EW8_BONE	0.16	0.19	0.1877	TRUE	20	16	0	28	0	FALSE	ACH-000499
EW8_BONE	MT-ATP6--MT-CO1	4	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13617	32355	0	0	0.05	0.025	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EW8_BONE	0	0	0.075	FALSE	183	104	9	328	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	3	6	MT-ND4	1515	chrM:11274:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	30795	264	0	0.03	0.0375	0.0751	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.03	0.1126	FALSE	231	217	16	283	0	FALSE	ACH-000499
EW8_BONE	WBP1L--TRIM8	4	2	WBP1L	1174	chr10:104503900:+	TRIM8	15031	chr10:104414410:+	ONLY_REF_SPLICE	YES	42	76	0.12	0.07	0.05	0.025	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[85563],WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+,TRIM8->chr10:104404253-104418164:+,tripartite_motif_containing_8	EW8_BONE	0.07	0.12	0.075	TRUE	1	1	0	1	1	FALSE	ACH-000499
EW8_BONE	MT-CO1--MT-ND2	3	5	MT-CO1	1653	chrM:6556:+	MT-ND2	6195	chrM:5122:+	INCL_NON_REF_SPLICE	YES	33004	10071	0	0	0.0375	0.0626	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EW8_BONE	0	0	0.1001	FALSE	55	19	1	13	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	4	1	MT-ND4	1244	chrM:11003:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	20464	879	0	0.01	0.05	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.01	0.0625	FALSE	231	204	14	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	4	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	21401	2117	0	0	0.05	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0	0.0625	FALSE	231	204	14	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	4	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5571	chrM:8558:+	INCL_NON_REF_SPLICE	YES	20033	779	0	0.01	0.05	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.01	0.0625	FALSE	231	204	14	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	4	1	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13651	110	0	0.04	0.05	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.04	0.0625	FALSE	230	193	14	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	4	1	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	23186	2046	0	0	0.05	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0	0.0625	FALSE	231	205	14	283	0	FALSE	ACH-000499
EW8_BONE	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0.0125	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EW8_BONE	1	1	0.0625	FALSE	462	80	0	856	0	FALSE	ACH-000499
EW8_BONE	ELN--TYSND1	4	0	ELN	3702	chr7:73450914:+	TYSND1	30546	chr10:71905801:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0	ELN->Oncogene{Bushman},chr7:73442119-73484237:+,elastin,TYSND1->chr10:71897737-71906432:-,trypsin_domain_containing_1	EW8_BONE	1	1	0.05	TRUE	0	0	0	2	0	TRUE	ACH-000499
EW8_BONE	MT-ATP6--MT-CO1	3	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	16482	32355	0	0	0.0375	0.05	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EW8_BONE	0	0	0.0875	FALSE	183	104	9	328	0	FALSE	ACH-000499
EW8_BONE	MT-CO1--MT-ND2	4	0	MT-CO1	1653	chrM:6556:+	MT-ND2	6394	chrM:5321:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EW8_BONE	1	1	0.05	FALSE	55	19	1	13	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	3	4	MT-CO3	1006	chrM:9212:+	MT-ATP6	5062	chrM:8804:+	INCL_NON_REF_SPLICE	NO	0	28	1	0.2	0.0375	0.05	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.2	1	0.0875	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	GTDC1--R3HDM1	1	11	GTDC1	3392	chr2:145075046:-	R3HDM1	62757	chr2:136418840:+	ONLY_REF_SPLICE	YES	6	131	0.67	0.08	0.0125	0.1376	GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+	EW8_BONE	0.08	0.67	0.1501	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	KANSL1--ARL17B	1	11	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	NO	82	126	0.13	0.09	0.0125	0.1376	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	EW8_BONE	0.09	0.13	0.1501	TRUE	105	90	7	93	0	FALSE	ACH-000499
EW8_BONE	MT-CO1--MT-ND2	3	3	MT-CO1	1582	chrM:6485:+	MT-ND2	5999	chrM:4926:+	INCL_NON_REF_SPLICE	YES	28849	20577	0	0	0.0375	0.0375	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EW8_BONE	0	0	0.075	FALSE	55	19	1	13	0	FALSE	ACH-000499
EW8_BONE	MT-CO1--MT-ND2	3	3	MT-CO1	1544	chrM:6447:+	MT-ND2	5981	chrM:4908:+	INCL_NON_REF_SPLICE	YES	30415	20566	0	0	0.0375	0.0375	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EW8_BONE	0	0	0.075	FALSE	55	19	1	13	0	FALSE	ACH-000499
EW8_BONE	MT-CO1--MT-ND2	3	3	MT-CO1	1564	chrM:6467:+	MT-ND2	5972	chrM:4899:+	INCL_NON_REF_SPLICE	YES	29348	20758	0	0	0.0375	0.0375	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EW8_BONE	0	0	0.075	FALSE	55	19	1	13	0	FALSE	ACH-000499
EW8_BONE	MT-CO1--MT-ND2	3	3	MT-CO1	1598	chrM:6501:+	MT-ND2	6015	chrM:4942:+	INCL_NON_REF_SPLICE	YES	28268	20687	0	0	0.0375	0.0375	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EW8_BONE	0	0	0.075	FALSE	55	19	1	13	0	FALSE	ACH-000499
EW8_BONE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12877	32355	0	0	0.0375	0.025	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EW8_BONE	0	0	0.0625	FALSE	183	104	9	328	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	3	2	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	13	1	0.28	0.83	0.0375	0.025	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.28	0.83	0.0625	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	3	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	10	1	0.33	0.83	0.0375	0.025	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	0.33	0.83	0.0625	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	3	2	MT-ND4	1307	chrM:11066:+	MT-ATP8	5506	chrM:8493:+	INCL_NON_REF_SPLICE	YES	26984	1381	0	0	0.0375	0.025	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0	0.0625	FALSE	231	205	14	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	3	2	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	20504	1	0	0.83	0.0375	0.025	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.83	0.0625	FALSE	231	204	14	283	0	FALSE	ACH-000499
EW8_BONE	CTD-2078B5.2--AHRR	2	5	CTD-2078B5.2	2141	chr5:39521729:+	AHRR	17329	chr5:422844:+	ONLY_REF_SPLICE	YES	63	11	0.1	0.39	0.025	0.0626	CTD-2078B5.2->chr5:39520533-39524810:+,AHRR->aryl-hydrocarbon_receptor_repressor,chr5:304291-438406:+	EW8_BONE	0.1	0.39	0.0876	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	KIAA1456--LINC00681	2	5	KIAA1456	6862	chr8:12863865:+	LINC00681	27109	chr8:12675472:+	ONLY_REF_SPLICE	YES	200	0	0.03	1	0.025	0.0626	KIAA1456->KIAA1456,chr8:12803151-12889012:+,LINC00681->chr8:12651752-12675800:+,long_intergenic_non-protein_coding_RNA_681	EW8_BONE	0.03	1	0.0876	TRUE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	MT-CO1--MT-ND2	3	1	MT-CO1	1939	chrM:6842:+	MT-ND2	6374	chrM:5301:+	INCL_NON_REF_SPLICE	YES	32982	2039	0	0	0.0375	0.0125	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EW8_BONE	0	0	0.05	FALSE	55	19	1	13	0	FALSE	ACH-000499
EW8_BONE	MT-CO1--MT-ND2	3	1	MT-CO1	1601	chrM:6504:+	MT-ND2	6171	chrM:5098:+	INCL_NON_REF_SPLICE	YES	28519	11381	0	0	0.0375	0.0125	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EW8_BONE	0	0	0.05	FALSE	55	19	1	13	0	FALSE	ACH-000499
EW8_BONE	MT-CO1--MT-ND2	3	1	MT-CO1	1264	chrM:6167:+	MT-ND2	5867	chrM:4794:+	INCL_NON_REF_SPLICE	YES	8863	21006	0	0	0.0375	0.0125	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EW8_BONE	0	0	0.05	FALSE	55	19	1	13	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ATP8	3	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	20033	149	0	0.03	0.0375	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EW8_BONE	0	0.03	0.05	FALSE	231	204	14	283	0	FALSE	ACH-000499
EW8_BONE	MT-ND4--MT-ND4L	3	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	14	0	0.22	1	0.0375	0.0125	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EW8_BONE	0.22	1	0.05	FALSE	344	821	44	306	0	FALSE	ACH-000499
EW8_BONE	MT-CO1--MT-ND2	3	0	MT-CO1	1642	chrM:6545:+	MT-ND2	6442	chrM:5369:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EW8_BONE	1	1	0.0375	FALSE	55	19	1	13	0	FALSE	ACH-000499
EW8_BONE	MT-CO1--MT-ND2	3	0	MT-CO1	1653	chrM:6556:+	MT-ND2	6382	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EW8_BONE	1	1	0.0375	FALSE	55	19	1	13	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	1	1	0.0375	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	MT-CO3--MT-ATP6	3	0	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EW8_BONE	1	1	0.0375	FALSE	189	492	56	216	0	FALSE	ACH-000499
EW8_BONE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	EW8_BONE	1	1	0.0375	TRUE	0	0	0	434	0	FALSE	ACH-000499
EW8_BONE	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	EW8_BONE	1	1	0.0375	TRUE	0	0	0	434	0	FALSE	ACH-000499
EW8_BONE	RP11-124B13.1--RP11-158A14.1	1	8	RP11-124B13.1	4066	chr8:5916524:-	RP11-158A14.1	8240	chr8:5894496:-	ONLY_REF_SPLICE	NO	62	0	0.13	1	0.0125	0.1001	NEIGHBORS[7379],RP11-124B13.1->chr8:5901875-6115058:-,RP11-158A14.1->chr8:5893955-5894496:-	EW8_BONE	0.13	1	0.1126	FALSE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	SAMD5--SASH1	3	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0375	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	EW8_BONE	1	1	0.0375	TRUE	53	396	64	110	0	FALSE	ACH-000499
EW8_BONE	OXCT1--LINC01033	2	2	OXCT1	14883	chr5:41794105:-	LINC01033	30654	chr5:53697473:+	ONLY_REF_SPLICE	NO	128	0	0.03	1	0.025	0.025	OXCT1->3-oxoacid_CoA-transferase_1,chr5:41730167-41870621:-,LINC01033->chr5:53616774-53710955:+,long_intergenic_non-protein_coding_RNA_1033	EW8_BONE	0.03	1	0.05	TRUE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	RP11-108K3.1--GLDN	2	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0.025	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	EW8_BONE	1	1	0.05	FALSE	1	20	0	46	0	FALSE	ACH-000499
EW8_BONE	RP11-108K3.1--GLDN	2	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0.025	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	EW8_BONE	1	1	0.05	FALSE	0	30	1	55	0	FALSE	ACH-000499
EW8_BONE	DANCR--HMGB1	2	1	DANCR	1530	chr4:53579126:+	HMGB1	12041	chr13:31037831:-	ONLY_REF_SPLICE	NO	930	1571	0	0	0.025	0.0125	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	EW8_BONE	0	0	0.0375	FALSE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	KIAA1456--LINC00681	1	5	KIAA1456	11709	chr8:12870302:+	LINC00681	27109	chr8:12675472:+	ONLY_REF_SPLICE	YES	208	0	0.03	1	0.0125	0.0626	KIAA1456->KIAA1456,chr8:12803151-12889012:+,LINC00681->chr8:12651752-12675800:+,long_intergenic_non-protein_coding_RNA_681	EW8_BONE	0.03	1	0.0751	TRUE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	RP11-124B13.1--RP11-158A14.1	1	5	RP11-124B13.1	2250	chr8:5957850:-	RP11-158A14.1	8240	chr8:5894496:-	ONLY_REF_SPLICE	YES	86	0	0.07	1	0.0125	0.0626	NEIGHBORS[7379],RP11-124B13.1->chr8:5901875-6115058:-,RP11-158A14.1->chr8:5893955-5894496:-	EW8_BONE	0.07	1	0.0751	FALSE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	GTDC1--R3HDM1	1	4	GTDC1	2282	chr2:145077286:-	R3HDM1	63881	chr2:136432902:+	ONLY_REF_SPLICE	YES	6	118	0.45	0.04	0.0125	0.05	GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+	EW8_BONE	0.04	0.45	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	KIAA1456--LINC00681	1	4	KIAA1456	5707	chr8:12848540:+	LINC00681	27109	chr8:12675472:+	ONLY_REF_SPLICE	YES	203	0	0.02	1	0.0125	0.05	KIAA1456->KIAA1456,chr8:12803151-12889012:+,LINC00681->chr8:12651752-12675800:+,long_intergenic_non-protein_coding_RNA_681	EW8_BONE	0.02	1	0.0625	TRUE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	NAP1L4--COA5	2	0	NAP1L4	21555	chr11:2972489:-	COA5	30993	chr2:99220654:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	NAP1L4->chr11:2965667-3013607:-,nucleosome_assembly_protein_1_like_4,COA5->chr2:99215773-99224978:-,cytochrome_c_oxidase_assembly_factor_5	EW8_BONE	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	NRG1-IT1--NRG1-IT2	2	0	NRG1-IT1	1146	chr8:31883880:+	NRG1-IT2	15465	chr8:32144617:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	NEIGHBORS[31907],NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+,NRG1-IT2->chr8:32028898-32145082:+	EW8_BONE	1	1	0.025	FALSE	0	0	0	3	0	FALSE	ACH-000499
EW8_BONE	PTS--SLC7A1	2	0	PTS	5643	chr11:112103956:+	SLC7A1	20182	chr13:30098390:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	PTS->6-pyruvoyltetrahydropterin_synthase,chr11:112097088-112140678:+,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	EW8_BONE	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	RCC1--LRFN5	2	0	RCC1	2175	chr1:28834672:+	LRFN5	27706	chr14:42236057:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,LRFN5->chr14:42076773-42373752:+,leucine_rich_repeat_and_fibronectin_type_III_domain_containing_5	EW8_BONE	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	RP13-16H11.2--LMO3	2	0	RP13-16H11.2	2132	chr10:26957336:-	LMO3	20192	chr12:16713472:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	RP13-16H11.2->chr10:26953135-26965088:-,LMO3->LIM_domain_only_3,Oncogene{Bushman},chr12:16701307-16763528:-	EW8_BONE	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	ZNF850--CTD-2528L19.4	2	0	ZNF850	3134	chr19:37252545:-	CTD-2528L19.4	16747	chr19:38202593:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	PROTCLUST,ZNF850->chr19:37205285-37263727:-,zinc_finger_protein_850,CTD-2528L19.4->chr19:38180766-38210089:-	EW8_BONE	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	RP11-141M1.3--STARD13	1	3	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	5	304	0.44	0.01	0.0125	0.0375	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	EW8_BONE	0.01	0.44	0.05	FALSE	141	264	50	91	0	FALSE	ACH-000499
EW8_BONE	ANKRD36--CPED1	1	2	ANKRD36	46849	chr2:97890616:+	CPED1	89740	chr7:120901686:+	ONLY_REF_SPLICE	YES	18	0	0.14	1	0.0125	0.025	ANKRD36->ankyrin_repeat_domain_36,chr2:97779233-97930258:+,CPED1->cadherin_like_and_PC-esterase_domain_containing_1,chr7:120628731-120937498:+	EW8_BONE	0.14	1	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000499
EW8_BONE	KANSL1--ARL17B	1	2	KANSL1	9741	chr17:44171926:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	63	6	0.05	0.33	0.0125	0.025	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	EW8_BONE	0.05	0.33	0.0375	TRUE	51	25	1	17	0	FALSE	ACH-000499
EW8_BONE	OXCT1--LINC01033	1	2	OXCT1	14883	chr5:41794105:-	LINC01033	28354	chr5:53692827:+	ONLY_REF_SPLICE	YES	128	0	0.02	1	0.0125	0.025	OXCT1->3-oxoacid_CoA-transferase_1,chr5:41730167-41870621:-,LINC01033->chr5:53616774-53710955:+,long_intergenic_non-protein_coding_RNA_1033	EW8_BONE	0.02	1	0.0375	TRUE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	RP11-124B13.1--RP11-158A14.1	1	2	RP11-124B13.1	1126	chr8:6114933:-	RP11-158A14.1	8240	chr8:5894496:-	ONLY_REF_SPLICE	YES	31	0	0.09	1	0.0125	0.025	NEIGHBORS[7379],RP11-124B13.1->chr8:5901875-6115058:-,RP11-158A14.1->chr8:5893955-5894496:-	EW8_BONE	0.09	1	0.0375	FALSE	0	0	0	2	0	FALSE	ACH-000499
EW8_BONE	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0125	0.025	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	EW8_BONE	0.75	1	0.0375	TRUE	160	277	29	98	0	FALSE	ACH-000499
EW8_BONE	CPSF6--NR0B1	1	1	CPSF6	11046	chr12:69656342:+	NR0B1	23329	chrX:30322940:-	ONLY_REF_SPLICE	YES	375	456	0.01	0	0.0125	0.0125	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,NR0B1->chrX:30322323-30327715:-,nuclear_receptor_subfamily_0_group_B_member_1	EW8_BONE	0	0.01	0.025	FALSE	0	1	0	8	0	FALSE	ACH-000499
EW8_BONE	CREB1--ABI2	1	1	CREB1	1398	chr2:208394858:+	ABI2	42086	chr2:204267299:+	ONLY_REF_SPLICE	YES	164	205	0.01	0.01	0.0125	0.0125	CREB1->Oncogene{Bushman},cAMP_responsive_element_binding_protein_1,chr2:208394461-208468155:+,ABI2->abl-interactor_2,chr2:204192942-204312446:+	EW8_BONE	0.01	0.01	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	DAPK1--ABI2	1	1	DAPK1	5530	chr9:90220090:+	ABI2	48371	chr2:204255769:+	ONLY_REF_SPLICE	YES	126	135	0.02	0.01	0.0125	0.0125	DAPK1->Oncogene{Bushman},chr9:90112143-90323548:+,death_associated_protein_kinase_1,ABI2->abl-interactor_2,chr2:204192942-204312446:+	EW8_BONE	0.01	0.02	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	DLGAP1--MYL12B	1	1	DLGAP1	14797	chr18:3845232:-	MYL12B	42828	chr18:3272882:+	ONLY_REF_SPLICE	YES	104	167	0.02	0.01	0.0125	0.0125	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	EW8_BONE	0.01	0.02	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	GEMIN6--WDR73	1	1	GEMIN6	4383	chr2:39006260:+	WDR73	12835	chr15:85196930:-	ONLY_REF_SPLICE	YES	418	15	0	0.12	0.0125	0.0125	GEMIN6->chr2:38978676-39012142:+,gem_nuclear_organelle_associated_protein_6,WDR73->WD_repeat_domain_73,chr15:85185999-85197574:-	EW8_BONE	0	0.12	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	KIAA1456--LINC00681	1	1	KIAA1456	3355	chr8:12809867:+	LINC00681	27109	chr8:12675472:+	ONLY_REF_SPLICE	NO	207	0	0.01	1	0.0125	0.0125	KIAA1456->KIAA1456,chr8:12803151-12889012:+,LINC00681->chr8:12651752-12675800:+,long_intergenic_non-protein_coding_RNA_681	EW8_BONE	0.01	1	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	MTF1--GABPB2	1	1	MTF1	3370	chr1:38322923:-	GABPB2	24750	chr1:151060666:+	ONLY_REF_SPLICE	YES	14	24	0.12	0.08	0.0125	0.0125	MTF1->chr1:38275239-38325292:-,metal-regulatory_transcription_factor_1,GABPB2->GA_binding_protein_transcription_factor_beta_subunit_2,chr1:151043054-151098018:+	EW8_BONE	0.08	0.12	0.025	TRUE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	1	1	0.67	0.0125	0.0125	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	EW8_BONE	0.67	1	0.025	TRUE	274	363	69	150	0	FALSE	ACH-000499
EW8_BONE	RP13-16H11.2--KANSL2	1	1	RP13-16H11.2	2132	chr10:26957336:-	KANSL2	17802	chr12:49048843:-	ONLY_REF_SPLICE	YES	149	149	0.01	0.01	0.0125	0.0125	RP13-16H11.2->chr10:26953135-26965088:-,KANSL2->KAT8_regulatory_NSL_complex_subunit_2,chr12:49047184-49076021:-	EW8_BONE	0.01	0.01	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	RPS16--PLEKHG2	1	1	RPS16	1342	chr19:39926247:-	PLEKHG2	15651	chr19:39912755:+	ONLY_REF_SPLICE	YES	6994	171	0	0.01	0.0125	0.0125	LOCAL_INVERSION:-:+:[4793],RPS16->chr19:39923847-39926588:-,ribosomal_protein_S16,PLEKHG2->Oncogene{Bushman},chr19:39903225-39919054:+,pleckstrin_homology_and_RhoGEF_domain_containing_G2	EW8_BONE	0	0.01	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000499
EW8_BONE	SLC39A10--AC064834.1	1	1	SLC39A10	9336	chr2:196548630:+	AC064834.1	24605	chr2:196320234:+	ONLY_REF_SPLICE	YES	43	0	0.04	1	0.0125	0.0125	LOCAL_REARRANGEMENT:+:[97052],SLC39A10->chr2:196440701-196602426:+,solute_carrier_family_39_member_10,AC064834.1->chr2:196313256-196343649:+	EW8_BONE	0.04	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000499
PANC0403_PANCREAS	MT-TA--MT-TN	230	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.1197	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0403_PANCREAS	1	1	2.1197	FALSE	369	2501	205	193	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TC	124	18	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1428	0.1659	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0403_PANCREAS	1	1	1.3087	FALSE	462	80	0	856	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	113	11	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	1.0414	0.1014	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.98	1	1.1428	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	TIMM23B--LINC00843	105	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9677	0.1659	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PANC0403_PANCREAS	1	1	1.1336	TRUE	508	994	45	981	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	13	285	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	42	0	0.88	1	0.1198	2.6266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.88	1	2.7464	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	4	306	MT-ND4	2279	chrM:12038:+	MT-ND4L	5519	chrM:10610:+	INCL_NON_REF_SPLICE	YES	145	0	0.68	1	0.0369	2.8201	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.68	1	2.857	FALSE	288	732	40	297	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	9	278	MT-ND4	1116	chrM:10875:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	16	0	0.95	1	0.0829	2.5621	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.95	1	2.645	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	8	281	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	24	0	0.92	1	0.0737	2.5897	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.92	1	2.6634	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	4	295	MT-ND4	1747	chrM:11506:+	MT-ND4L	5523	chrM:10614:+	INCL_NON_REF_SPLICE	YES	7007	0	0.04	1	0.0369	2.7188	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.04	1	2.7557	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	6	286	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	39	0	0.88	1	0.0553	2.6358	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.88	1	2.6911	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	4	294	MT-ND4	1531	chrM:11290:+	MT-ND4L	5417	chrM:10508:+	INCL_NON_REF_SPLICE	YES	1285	0	0.19	1	0.0369	2.7096	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.19	1	2.7465	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	6	285	MT-ND4	1197	chrM:10956:+	MT-ND4L	5432	chrM:10523:+	INCL_NON_REF_SPLICE	YES	42	0	0.87	1	0.0553	2.6266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.87	1	2.6819	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	3	295	MT-ND4	1724	chrM:11483:+	MT-ND4L	5482	chrM:10573:+	INCL_NON_REF_SPLICE	YES	6026	0	0.05	1	0.0276	2.7188	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.05	1	2.7464	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	5	286	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	38	0	0.88	1	0.0461	2.6358	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.88	1	2.6819	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	3	292	MT-ND4	1531	chrM:11290:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	1285	0	0.19	1	0.0276	2.6911	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.19	1	2.7187	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	4	286	MT-ND4	1311	chrM:11070:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	83	0	0.78	1	0.0369	2.6358	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.78	1	2.6727	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	4	286	MT-ND4	1263	chrM:11022:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	49	0	0.86	1	0.0369	2.6358	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.86	1	2.6727	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	4	285	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	35	0	0.89	1	0.0369	2.6266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.89	1	2.6635	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	3	289	MT-ND4	1459	chrM:11218:+	MT-ND4L	5475	chrM:10566:+	INCL_NON_REF_SPLICE	YES	533	0	0.35	1	0.0276	2.6635	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.35	1	2.6911	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	4	284	MT-ND4	1192	chrM:10951:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	YES	40	0	0.88	1	0.0369	2.6174	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.88	1	2.6543	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	67	31	MT-ND4	2053	chrM:11812:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	18297	0	0.01	1	0.6175	0.2857	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.01	1	0.9032	FALSE	343	821	44	305	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	5	277	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	14	0	0.95	1	0.0461	2.5529	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.95	1	2.599	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	3	285	MT-ND4	1222	chrM:10981:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	39	0	0.88	1	0.0276	2.6266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.88	1	2.6542	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	4	278	MT-ND4	1125	chrM:10884:+	MT-ND4L	5518	chrM:10609:+	INCL_NON_REF_SPLICE	YES	19	0	0.94	1	0.0369	2.5621	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.94	1	2.599	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	3	277	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	22	0	0.93	1	0.0276	2.5529	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.93	1	2.5805	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	17	204	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	11	0	0.95	1	0.1567	1.8801	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.95	1	2.0368	FALSE	344	821	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	TIMM23--RP11-464F9.1	67	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	242	2	0.23	0.97	0.6175	0.0369	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PANC0403_PANCREAS	0.23	0.97	0.6544	TRUE	519	3926	326	965	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	3	256	MT-ND4	1092	chrM:10851:+	MT-ND4L	5537	chrM:10628:+	INCL_NON_REF_SPLICE	YES	11	0	0.96	1	0.0276	2.3593	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.96	1	2.3869	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TN	33	112	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3041	1.0322	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0403_PANCREAS	1	1	1.3363	FALSE	369	2501	205	193	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	28	131	MT-CO3	1138	chrM:9344:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	10	10	0.94	0.94	0.2581	1.2073	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.94	0.94	1.4654	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	55	20	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	7	0	0.91	1	0.5069	0.1843	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.91	1	0.6912	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	26	131	MT-CO3	1153	chrM:9359:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	11	11	0.93	0.93	0.2396	1.2073	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.93	0.93	1.4469	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	3	197	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	65	0	0.75	1	0.0276	1.8156	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.75	1	1.8432	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND1	48	14	MT-ND4	2043	chrM:11802:+	MT-ND1	5745	chrM:3673:+	INCL_NON_REF_SPLICE	NO	18377	259	0	0.19	0.4424	0.129	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PANC0403_PANCREAS	0	0.19	0.5714	FALSE	51	52	3	16	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	3	192	MT-ND4	1164	chrM:10923:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	29	0	0.87	1	0.0276	1.7695	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.87	1	1.7971	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	ZNF654--HMGB2	51	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.47	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	PANC0403_PANCREAS	1	1	0.47	TRUE	0	0	0	518	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	5	178	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	79	0	0.7	1	0.0461	1.6405	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.7	1	1.6866	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	46	12	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.4239	0.1106	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.97	1	0.5345	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TN	41	28	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3779	0.2581	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0403_PANCREAS	1	1	0.636	FALSE	369	2501	205	193	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	3	175	MT-ND4	1131	chrM:10890:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	19	0	0.9	1	0.0276	1.6128	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.9	1	1.6404	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	10	131	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	10	11	0.93	0.93	0.0922	1.2073	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.93	0.93	1.2995	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	26	66	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	16573	0	0.01	1	0.2396	0.6083	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.01	1	0.8479	FALSE	328	800	43	304	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	6	142	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	29	0	0.84	1	0.0553	1.3087	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.84	1	1.364	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	4	142	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12	0	0.92	1	0.0369	1.3087	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.92	1	1.3456	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-ND5	38	6	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	4898	1	0.01	0.3502	0.0553	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0403_PANCREAS	0.01	1	0.4055	FALSE	101	855	57	72	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	6	131	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	10	11	0.93	0.93	0.0553	1.2073	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.93	0.93	1.2626	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	4	138	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	45	0	0.76	1	0.0369	1.2718	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.76	1	1.3087	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	3	141	MT-CO3	1533	chrM:9739:+	MT-ATP6	5050	chrM:8792:+	INCL_NON_REF_SPLICE	YES	10	24	0.94	0.86	0.0276	1.2995	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.86	0.94	1.3271	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	4	137	MT-CO3	1152	chrM:9358:+	MT-ATP6	4937	chrM:8679:+	INCL_NON_REF_SPLICE	YES	11	20	0.93	0.88	0.0369	1.2626	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.88	0.93	1.2995	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	5	132	MT-CO3	1220	chrM:9426:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	12	11	0.92	0.93	0.0461	1.2165	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.92	0.93	1.2626	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	4	135	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	12	75	0.92	0.65	0.0369	1.2442	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.65	0.92	1.2811	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	4	133	MT-CO3	1123	chrM:9329:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	7	23	0.95	0.86	0.0369	1.2258	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.86	0.95	1.2627	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	3	133	MT-CO3	1143	chrM:9349:+	MT-ATP6	5066	chrM:8808:+	INCL_NON_REF_SPLICE	YES	10	28	0.93	0.83	0.0276	1.2258	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.83	0.93	1.2534	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	3	132	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	20	11	0.87	0.92	0.0276	1.2165	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.87	0.92	1.2441	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TN	15	78	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1382	0.7189	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0403_PANCREAS	1	1	0.8571	FALSE	369	2501	205	193	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	5	115	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	3	7	0.98	0.94	0.0461	1.0599	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.94	0.98	1.106	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	4	117	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	3	41	0.98	0.75	0.0369	1.0783	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.75	0.98	1.1152	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	3	120	MT-CO3	1112	chrM:9318:+	MT-ATP6	5042	chrM:8784:+	INCL_NON_REF_SPLICE	YES	5	24	0.96	0.84	0.0276	1.1059	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.84	0.96	1.1335	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TN	33	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3041	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0403_PANCREAS	1	1	0.3041	FALSE	369	2501	205	193	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	3	117	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	4	6	0.97	0.95	0.0276	1.0783	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.95	0.97	1.1059	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	4	112	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	3	10	0.97	0.92	0.0369	1.0322	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.92	0.97	1.0691	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	3	113	MT-CO3	1072	chrM:9278:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.0276	1.0414	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.97	1	1.069	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	3	113	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	3	24	0.97	0.83	0.0276	1.0414	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.83	0.97	1.069	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	7	96	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	3	3	0.97	0.97	0.0645	0.8848	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.97	0.97	0.9493	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	20	37	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1285	0	0.04	1	0.1843	0.341	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.04	1	0.5253	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TC	25	16	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2304	0.1475	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0403_PANCREAS	1	1	0.3779	FALSE	462	80	0	856	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TN	29	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2673	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0403_PANCREAS	1	1	0.2673	FALSE	369	2501	205	193	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	4	93	MT-ND4	1269	chrM:11028:+	MT-ND4L	5644	chrM:10735:+	INCL_NON_REF_SPLICE	YES	53	0	0.65	1	0.0369	0.8571	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.65	1	0.894	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	25	4	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	10	1	0.74	0.97	0.2304	0.0369	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.74	0.97	0.2673	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	21	18	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	64	0	0.38	1	0.1935	0.1659	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.38	1	0.3594	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND1	25	1	MT-ND4	1213	chrM:10972:+	MT-ND1	5394	chrM:3322:+	INCL_NON_REF_SPLICE	YES	15716	0	0	1	0.2304	0.0092	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PANC0403_PANCREAS	0	1	0.2396	FALSE	51	50	3	16	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TN	16	37	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1475	0.341	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0403_PANCREAS	1	1	0.4885	FALSE	369	2501	205	193	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	9	63	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1105	0	0.06	1	0.0829	0.5806	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.06	1	0.6635	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TL1--MT-RNR2	6	74	MT-TL1	1095	chrM:3324:+	MT-RNR2	5554	chrM:3149:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0553	0.682	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	1	1	0.7373	FALSE	7	521	16	32	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	6	72	MT-CO3	1038	chrM:9244:+	MT-ATP6	5225	chrM:8967:+	INCL_NON_REF_SPLICE	YES	4	28	0.95	0.74	0.0553	0.6636	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.74	0.95	0.7189	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	15	36	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	39	0	0.57	1	0.1382	0.3318	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.57	1	0.47	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	14	37	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.129	0.341	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.96	1	0.47	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	13	40	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	7	0	0.88	1	0.1198	0.3686	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.88	1	0.4884	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	7	59	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0645	0.5438	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.97	1	0.6083	FALSE	344	821	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	6	61	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	29	0	0.7	1	0.0553	0.5622	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.7	1	0.6175	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	14	27	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	44	0	0.48	1	0.129	0.2488	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0.48	1	0.3778	FALSE	114	26	4	85	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	13	30	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	40	0	0.52	1	0.1198	0.2765	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.52	1	0.3963	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO2--MT-CO1	18	9	MT-CO2	1249	chrM:7834:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	17	28462	0.61	0	0.1659	0.0829	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0403_PANCREAS	0	0.61	0.2488	FALSE	36	10	0	27	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	5	61	MT-ND4	1201	chrM:10960:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	45	0	0.59	1	0.0461	0.5622	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.59	1	0.6083	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	11	36	MT-ND4	1195	chrM:10954:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	42	0	0.53	1	0.1014	0.3318	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.53	1	0.4332	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	4	61	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	64	0	0.5	1	0.0369	0.5622	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.5	1	0.5991	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	4	61	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	38	0	0.63	1	0.0369	0.5622	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.63	1	0.5991	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TN	5	57	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0.5253	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0403_PANCREAS	1	1	0.5714	FALSE	369	2501	205	193	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TL1--MT-RNR2	5	57	MT-TL1	1086	chrM:3315:+	MT-RNR2	5568	chrM:3163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0.5253	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	1	1	0.5714	FALSE	7	521	16	32	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	3	64	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	4	0	0.94	1	0.0276	0.5898	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.94	1	0.6174	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TC	19	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1751	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0403_PANCREAS	1	1	0.1751	FALSE	462	80	0	856	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	8	38	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	4	2	0.92	0.96	0.0737	0.3502	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.92	0.96	0.4239	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	7	39	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	39	0	0.54	1	0.0645	0.3594	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.54	1	0.4239	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	7	39	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	9	0	0.84	1	0.0645	0.3594	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.84	1	0.4239	FALSE	344	821	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	6	40	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	8	0	0.85	1	0.0553	0.3686	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.85	1	0.4239	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	3	49	MT-CO3	1019	chrM:9225:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	2	7	0.96	0.88	0.0276	0.4516	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.88	0.96	0.4792	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	15	1	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	3	0	0.84	1	0.1382	0.0092	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.84	1	0.1474	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	3	49	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	2	6	0.96	0.9	0.0276	0.4516	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.9	0.96	0.4792	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TN	3	49	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0.4516	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0403_PANCREAS	1	1	0.4792	FALSE	369	2501	205	193	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	6	36	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	29	0	0.59	1	0.0553	0.3318	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.59	1	0.3871	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TC	10	20	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0922	0.1843	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0403_PANCREAS	1	1	0.2765	FALSE	462	80	0	856	0	FALSE	ACH-000235
PANC0403_PANCREAS	C15orf57--CBX3	14	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	35	44	0.33	0.28	0.129	0.0276	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PANC0403_PANCREAS	0.28	0.33	0.1566	TRUE	267	562	48	632	0	FALSE	ACH-000235
PANC0403_PANCREAS	RP11-114H23.1--RP11-114H23.2	14	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.129	0.0276	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	PANC0403_PANCREAS	0.94	1	0.1566	FALSE	81	155	12	160	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	4	40	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	10	2	0.81	0.96	0.0369	0.3686	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.81	0.96	0.4055	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	4	40	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0369	0.3686	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.98	1	0.4055	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	7	27	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	43	0	0.44	1	0.0645	0.2488	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0.44	1	0.3133	FALSE	114	26	4	85	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	4	39	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	18387	0	0	1	0.0369	0.3594	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0	1	0.3963	FALSE	343	822	44	305	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO2--MT-CO1	10	14	MT-CO2	1493	chrM:8078:+	MT-CO1	5625	chrM:6844:+	INCL_NON_REF_SPLICE	YES	5	11832	0.83	0	0.0922	0.129	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0403_PANCREAS	0	0.83	0.2212	FALSE	36	10	0	27	0	FALSE	ACH-000235
PANC0403_PANCREAS	NRIP1--AF127936.7	13	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1198	0.0184	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0403_PANCREAS	0.94	1	0.1382	FALSE	292	1546	117	613	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	13	1	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	2	2	0.88	0.88	0.1198	0.0092	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.88	0.88	0.129	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	6	29	MT-ND1	1297	chrM:3603:+	MT-RNR2	5001	chrM:1715:+	INCL_NON_REF_SPLICE	YES	56	0	0.38	1	0.0553	0.2673	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0.38	1	0.3226	FALSE	114	26	4	85	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	4	36	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	61	0	0.4	1	0.0369	0.3318	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.4	1	0.3687	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	4	36	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	38	0	0.51	1	0.0369	0.3318	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.51	1	0.3687	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TL1--MT-RNR2	13	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1198	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	1	1	0.1198	FALSE	7	521	16	32	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO2--MT-CO1	9	15	MT-CO2	1282	chrM:7867:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	16	12285	0.6	0	0.0829	0.1382	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0403_PANCREAS	0	0.6	0.2211	FALSE	36	10	0	27	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	5	31	MT-ND1	1308	chrM:3614:+	MT-RNR2	5013	chrM:1727:+	INCL_NON_REF_SPLICE	YES	62	0	0.37	1	0.0461	0.2857	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0.37	1	0.3318	FALSE	114	26	4	85	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	6	27	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0553	0.2488	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.97	1	0.3041	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	4	35	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	7	0	0.85	1	0.0369	0.3226	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.85	1	0.3595	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	9	14	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	10	2	0.7	0.92	0.0829	0.129	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.7	0.92	0.2119	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	10	10	MT-ND1	1297	chrM:3603:+	MT-RNR2	5502	chrM:2216:+	INCL_NON_REF_SPLICE	NO	56	14652	0.26	0	0.0922	0.0922	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0	0.26	0.1844	FALSE	120	26	5	87	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	8	18	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	64	0	0.29	1	0.0737	0.1659	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.29	1	0.2396	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-TL1	6	24	MT-ND1	1341	chrM:3647:+	MT-TL1	5012	chrM:3285:+	INCL_NON_REF_SPLICE	YES	53	0	0.36	1	0.0553	0.2212	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	PANC0403_PANCREAS	0.36	1	0.2765	FALSE	210	95	5	49	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	3	36	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	22	0	0.64	1	0.0276	0.3318	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.64	1	0.3594	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TN	12	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1106	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0403_PANCREAS	1	1	0.1106	FALSE	369	2501	205	193	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	5	26	MT-ND1	1264	chrM:3570:+	MT-RNR2	4980	chrM:1694:+	INCL_NON_REF_SPLICE	YES	43	0	0.42	1	0.0461	0.2396	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0.42	1	0.2857	FALSE	114	26	4	85	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	7	18	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	45	0	0.36	1	0.0645	0.1659	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.36	1	0.2304	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	3	34	MT-ND6	1196	chrM:14478:-	MT-TE	4557	chrM:14711:-	INCL_NON_REF_SPLICE	YES	7	0	0.84	1	0.0276	0.3133	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.84	1	0.3409	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	11	1	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	2	2	0.86	0.86	0.1014	0.0092	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.86	0.86	0.1106	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	9	9	MT-ND1	1086	chrM:3392:+	MT-RNR2	5099	chrM:1813:+	INCL_NON_REF_SPLICE	NO	4	6922	0.82	0	0.0829	0.0829	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0	0.82	0.1658	FALSE	114	26	4	85	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	4	28	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	4	2	0.89	0.94	0.0369	0.2581	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.89	0.94	0.295	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	11	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1014	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	1	1	0.1014	FALSE	344	821	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	9	8	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	4	0	0.81	1	0.0829	0.0737	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.81	1	0.1566	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	NRIP1--AF127936.7	9	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.35	1	0.0829	0.0461	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0403_PANCREAS	0.35	1	0.129	FALSE	164	806	69	479	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	4	24	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0369	0.2212	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.97	1	0.2581	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TN	10	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0922	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0403_PANCREAS	1	1	0.0922	FALSE	369	2501	205	193	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TC	5	19	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0.1751	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0403_PANCREAS	1	1	0.2212	FALSE	462	80	0	856	0	FALSE	ACH-000235
PANC0403_PANCREAS	C15orf57--CBX3	9	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	33	45	0.25	0.2	0.0829	0.0184	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PANC0403_PANCREAS	0.2	0.25	0.1013	TRUE	267	562	48	632	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO2--MT-CO1	6	14	MT-CO2	1278	chrM:7863:+	MT-CO1	5001	chrM:6220:+	INCL_NON_REF_SPLICE	YES	15	6614	0.57	0	0.0553	0.129	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0403_PANCREAS	0	0.57	0.1843	FALSE	36	10	0	27	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	3	26	MT-ND1	1252	chrM:3558:+	MT-RNR2	5209	chrM:1923:+	INCL_NON_REF_SPLICE	YES	46	11319	0.39	0	0.0276	0.2396	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0	0.39	0.2672	FALSE	116	26	5	85	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	5	18	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	11	0	0.68	1	0.0461	0.1659	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.68	1	0.212	FALSE	344	826	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	RP11-96H19.1--RP11-446N19.1	9	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	6	0	0.65	1	0.0829	0.0184	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PANC0403_PANCREAS	0.65	1	0.1013	FALSE	515	4851	409	746	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	6	13	MT-CO3	1005	chrM:9211:+	MT-ATP6	5314	chrM:9056:+	INCL_NON_REF_SPLICE	YES	1	8	0.95	0.7	0.0553	0.1198	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.7	0.95	0.1751	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	5	17	MT-ND1	1861	chrM:4167:+	MT-RNR2	5546	chrM:2260:+	INCL_NON_REF_SPLICE	NO	2	14625	0.92	0	0.0461	0.1567	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0	0.92	0.2028	FALSE	120	26	5	87	0	FALSE	ACH-000235
PANC0403_PANCREAS	RP11-123O10.4--GRIP1	9	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0829	0.0092	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PANC0403_PANCREAS	1	1	0.0921	FALSE	416	2512	207	587	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-ND5	9	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0829	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0403_PANCREAS	1	1	0.0829	FALSE	101	855	57	72	0	FALSE	ACH-000235
PANC0403_PANCREAS	PCBP2--MTND2P28	9	0	PCBP2	11835	chr12:53856343:+	MTND2P28	25766	chr1:565066:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0829	0	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	PANC0403_PANCREAS	1	1	0.0829	TRUE	0	0	0	9	0	TRUE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	7	7	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0645	0.0645	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	1	1	0.129	FALSE	344	821	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	3	23	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0276	0.212	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.9	1	0.2396	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	4	18	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	39	0	0.36	1	0.0369	0.1659	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.36	1	0.2028	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	3	22	MT-ND6	1199	chrM:14475:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	7	0	0.78	1	0.0276	0.2028	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.78	1	0.2304	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO2--MT-CO1	3	21	MT-CO2	1463	chrM:8048:+	MT-CO1	5176	chrM:6395:+	INCL_NON_REF_SPLICE	YES	8	16622	0.75	0	0.0276	0.1935	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0403_PANCREAS	0	0.75	0.2211	FALSE	36	10	0	27	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	6	9	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	16	1	0.48	0.94	0.0553	0.0829	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.48	0.94	0.1382	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	6	9	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	43	14388	0.26	0	0.0553	0.0829	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0	0.26	0.1382	FALSE	120	26	5	87	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	6	9	MT-ND1	1018	chrM:3324:+	MT-RNR2	6435	chrM:3149:+	INCL_NON_REF_SPLICE	YES	1	1	0.94	0.94	0.0553	0.0829	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0.94	0.94	0.1382	FALSE	92	22	4	61	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	8	1	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	9	0	0.5	1	0.0737	0.0092	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.5	1	0.0829	FALSE	344	821	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	3	20	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	7	0	0.77	1	0.0276	0.1843	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.77	1	0.2119	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	8	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0737	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	1	1	0.0737	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TC	4	16	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0.1475	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0403_PANCREAS	1	1	0.1844	FALSE	462	80	0	856	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-ND5	7	3	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	2812	1	0	0.0645	0.0276	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0403_PANCREAS	0	1	0.0921	FALSE	101	855	57	72	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	6	7	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	5	0	0.72	1	0.0553	0.0645	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.72	1	0.1198	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	3	19	MT-ND6	1260	chrM:14414:-	MT-TE	4573	chrM:14695:-	INCL_NON_REF_SPLICE	YES	6	0	0.79	1	0.0276	0.1751	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.79	1	0.2027	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	3	18	MT-ND4	1338	chrM:11097:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	117	0	0.15	1	0.0276	0.1659	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	0.15	1	0.1935	FALSE	344	827	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-ND5	6	6	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	4721	1	0	0.0553	0.0553	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0403_PANCREAS	0	1	0.1106	FALSE	101	855	57	72	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	7	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0645	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	1	1	0.0645	FALSE	344	821	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TN	7	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0645	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0403_PANCREAS	1	1	0.0645	FALSE	369	2501	205	193	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO2--MT-CO1	3	15	MT-CO2	1306	chrM:7891:+	MT-CO1	5170	chrM:6389:+	INCL_NON_REF_SPLICE	YES	16	16414	0.53	0	0.0276	0.1382	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0403_PANCREAS	0	0.53	0.1658	FALSE	36	10	0	27	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO2--MT-CO1	3	15	MT-CO2	1345	chrM:7930:+	MT-CO1	5249	chrM:6468:+	INCL_NON_REF_SPLICE	YES	12	24147	0.6	0	0.0276	0.1382	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0403_PANCREAS	0	0.6	0.1658	FALSE	36	10	0	27	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	5	7	MT-ND1	1009	chrM:3315:+	MT-RNR2	6449	chrM:3163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0.0645	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	1	1	0.1106	FALSE	92	22	4	61	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND1	3	15	MT-ND4	1975	chrM:11734:+	MT-ND1	5413	chrM:3341:+	INCL_NON_REF_SPLICE	YES	20151	0	0	1	0.0276	0.1382	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PANC0403_PANCREAS	0	1	0.1658	FALSE	51	52	3	16	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	4	11	MT-ND6	1149	chrM:14525:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	4	0	0.79	1	0.0369	0.1014	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.79	1	0.1383	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	NRIP1--AF127936.7	6	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.43	1	0.0553	0.0276	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0403_PANCREAS	0.43	1	0.0829	FALSE	125	705	46	456	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO2--MT-CO1	3	14	MT-CO2	1366	chrM:7951:+	MT-CO1	5341	chrM:6560:+	INCL_NON_REF_SPLICE	YES	12	28706	0.59	0	0.0276	0.129	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0403_PANCREAS	0	0.59	0.1566	FALSE	36	10	0	27	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND1	4	10	MT-ND4	1773	chrM:11532:+	MT-ND1	5390	chrM:3318:+	INCL_NON_REF_SPLICE	NO	21018	0	0	1	0.0369	0.0922	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PANC0403_PANCREAS	0	1	0.1291	FALSE	51	52	3	16	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TC	4	10	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0.0922	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0403_PANCREAS	1	1	0.1291	FALSE	462	80	0	856	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	3	13	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	1	11	0.94	0.59	0.0276	0.1198	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.59	0.94	0.1474	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	4	9	MT-ND1	1201	chrM:3507:+	MT-RNR2	5564	chrM:2278:+	INCL_NON_REF_SPLICE	YES	46	14791	0.22	0	0.0369	0.0829	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0	0.22	0.1198	FALSE	120	26	5	87	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	4	9	MT-ND1	1272	chrM:3578:+	MT-RNR2	5546	chrM:2260:+	INCL_NON_REF_SPLICE	YES	46	14625	0.22	0	0.0369	0.0829	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0	0.22	0.1198	FALSE	120	26	5	87	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO2--MT-CO1	6	0	MT-CO2	1240	chrM:7825:+	MT-CO1	6196	chrM:7415:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0553	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0403_PANCREAS	1	1	0.0553	FALSE	36	10	0	27	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO2--MT-CO1	6	0	MT-CO2	1129	chrM:7714:+	MT-CO1	6186	chrM:7405:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0553	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0403_PANCREAS	1	1	0.0553	FALSE	36	10	0	27	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO2--MT-CO1	4	8	MT-CO2	1227	chrM:7812:+	MT-CO1	5226	chrM:6445:+	INCL_NON_REF_SPLICE	YES	15	22124	0.44	0	0.0369	0.0737	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0403_PANCREAS	0	0.44	0.1106	FALSE	36	10	0	27	0	FALSE	ACH-000235
PANC0403_PANCREAS	OR51S1--TP53I11	6	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0553	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	PANC0403_PANCREAS	1	1	0.0553	TRUE	402	216	10	229	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TL1--MT-RNR2	3	10	MT-TL1	1104	chrM:3333:+	MT-RNR2	5603	chrM:3198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0.0922	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	1	1	0.1198	FALSE	7	521	16	32	0	FALSE	ACH-000235
PANC0403_PANCREAS	MTATP6P1--MTND2P28	5	2	MTATP6P1	1144	chr1:569219:+	MTND2P28	4961	chr1:565299:+	INCL_NON_REF_SPLICE	YES	2296	1763	0	0	0.0461	0.0184	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	PANC0403_PANCREAS	0	0	0.0645	FALSE	20	3	0	12	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	3	9	MT-ND1	1260	chrM:3566:+	MT-RNR2	5520	chrM:2234:+	INCL_NON_REF_SPLICE	YES	42	14725	0.22	0	0.0276	0.0829	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0	0.22	0.1105	FALSE	120	26	5	87	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	3	9	MT-ND1	1027	chrM:3333:+	MT-RNR2	6484	chrM:3198:+	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0276	0.0829	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0.92	1	0.1105	FALSE	92	21	4	61	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	3	9	MT-ND1	1207	chrM:3513:+	MT-RNR2	5683	chrM:2397:+	INCL_NON_REF_SPLICE	YES	42	17320	0.22	0	0.0276	0.0829	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0	0.22	0.1105	FALSE	120	26	5	87	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	3	9	MT-ND1	1462	chrM:3768:+	MT-RNR2	5687	chrM:2401:+	INCL_NON_REF_SPLICE	YES	158	17623	0.07	0	0.0276	0.0829	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0	0.07	0.1105	FALSE	120	26	5	87	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND1--MT-RNR2	3	9	MT-ND1	1235	chrM:3541:+	MT-RNR2	5565	chrM:2279:+	INCL_NON_REF_SPLICE	NO	47	14883	0.2	0	0.0276	0.0829	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0403_PANCREAS	0	0.2	0.1105	FALSE	120	26	5	87	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND1	4	5	MT-ND4	1538	chrM:11297:+	MT-ND1	5585	chrM:3513:+	INCL_NON_REF_SPLICE	YES	24440	140	0	0.06	0.0369	0.0461	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PANC0403_PANCREAS	0	0.06	0.083	FALSE	51	52	3	16	0	FALSE	ACH-000235
PANC0403_PANCREAS	MTATP6P1--MTND2P28	5	1	MTATP6P1	1108	chr1:569183:+	MTND2P28	4960	chr1:565298:+	INCL_NON_REF_SPLICE	YES	990	1874	0.01	0	0.0461	0.0092	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	PANC0403_PANCREAS	0	0.01	0.0553	FALSE	20	3	0	12	0	FALSE	ACH-000235
PANC0403_PANCREAS	AC004549.6--MT-ATP8	5	0	AC004549.6	1219	chr7:27779796:-	MT-ATP8	5962	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0	AC004549.6->chr7:27773014-27780014:-,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0403_PANCREAS	1	1	0.0461	FALSE	0	1	0	3	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND1	4	4	MT-ND4	1485	chrM:11244:+	MT-ND1	5597	chrM:3525:+	INCL_NON_REF_SPLICE	YES	21976	95	0	0.08	0.0369	0.0369	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PANC0403_PANCREAS	0	0.08	0.0738	FALSE	51	52	3	16	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND1	3	8	MT-ND4	2235	chrM:11994:+	MT-ND1	5876	chrM:3804:+	INCL_NON_REF_SPLICE	YES	4846	273	0	0.04	0.0276	0.0737	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PANC0403_PANCREAS	0	0.04	0.1013	FALSE	51	52	3	16	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND1	3	8	MT-ND4	2283	chrM:12042:+	MT-ND1	5890	chrM:3818:+	INCL_NON_REF_SPLICE	YES	67	283	0.14	0.04	0.0276	0.0737	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PANC0403_PANCREAS	0.04	0.14	0.1013	FALSE	51	52	3	16	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND4L	5	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0403_PANCREAS	1	1	0.0461	FALSE	344	821	44	306	0	FALSE	ACH-000235
PANC0403_PANCREAS	PCBP2--MTND2P28	5	0	PCBP2	11799	chr12:53856307:+	MTND2P28	25731	chr1:565031:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0461	0	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	PANC0403_PANCREAS	1	1	0.0461	TRUE	0	0	0	9	0	TRUE	ACH-000235
PANC0403_PANCREAS	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PANC0403_PANCREAS	1	1	0.0461	TRUE	465	1949	224	605	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO2--MT-CO1	3	7	MT-CO2	1219	chrM:7804:+	MT-CO1	5246	chrM:6465:+	INCL_NON_REF_SPLICE	NO	11	23817	0.48	0	0.0276	0.0645	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0403_PANCREAS	0	0.48	0.0921	FALSE	36	10	0	27	0	FALSE	ACH-000235
PANC0403_PANCREAS	LAMA3--ESCO1	4	2	LAMA3	59658	chr18:21489259:+	ESCO1	84437	chr18:19176960:-	ONLY_REF_SPLICE	YES	240	2	0.02	0.75	0.0369	0.0184	LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,ESCO1->chr18:19109242-19180845:-,establishment_of_sister_chromatid_cohesion_N-acetyltransferase_1	PANC0403_PANCREAS	0.02	0.75	0.0553	TRUE	0	0	0	1	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	3	6	MT-CO3	1145	chrM:9351:+	MT-ATP6	5455	chrM:9197:+	INCL_NON_REF_SPLICE	YES	10	1	0.47	0.9	0.0276	0.0553	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.47	0.9	0.0829	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO3--MT-ATP6	4	1	MT-CO3	1032	chrM:9238:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	NO	4	2	0.56	0.71	0.0369	0.0092	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0403_PANCREAS	0.56	0.71	0.0461	FALSE	189	492	56	216	0	FALSE	ACH-000235
PANC0403_PANCREAS	MTATP6P1--MTND2P28	3	5	MTATP6P1	1158	chr1:569233:+	MTND2P28	4816	chr1:565154:+	INCL_NON_REF_SPLICE	YES	2674	3191	0	0	0.0276	0.0461	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	PANC0403_PANCREAS	0	0	0.0737	FALSE	20	3	0	12	0	FALSE	ACH-000235
PANC0403_PANCREAS	ACTR3C--RP11-728K20.1	4	0	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	PANC0403_PANCREAS	1	1	0.0369	TRUE	0	5	0	16	1	TRUE	ACH-000235
PANC0403_PANCREAS	MT-ND3--MT-ATP8	4	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0403_PANCREAS	1	1	0.0369	FALSE	351	233	23	137	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	1	1	0.0369	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	1	1	0.0369	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TN	4	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0403_PANCREAS	1	1	0.0369	FALSE	369	2501	205	193	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-TA--MT-TN	4	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0403_PANCREAS	1	1	0.0369	FALSE	369	2501	205	193	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND5--MT-CO3	3	3	MT-ND5	1627	chrM:12963:+	MT-CO3	5765	chrM:9159:+	INCL_NON_REF_SPLICE	YES	8278	0	0	1	0.0276	0.0276	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PANC0403_PANCREAS	0	1	0.0552	FALSE	0	12	0	17	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND5--MT-CO3	3	3	MT-ND5	1727	chrM:13063:+	MT-CO3	5877	chrM:9271:+	INCL_NON_REF_SPLICE	YES	6644	1	0	0.86	0.0276	0.0276	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PANC0403_PANCREAS	0	0.86	0.0552	FALSE	0	16	1	17	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-ND5	3	3	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	2788	1	0	0.0276	0.0276	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0403_PANCREAS	0	1	0.0552	FALSE	101	855	57	72	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-CO2--MT-CO1	3	2	MT-CO2	1129	chrM:7714:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	6	28462	0.45	0	0.0276	0.0184	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0403_PANCREAS	0	0.45	0.046	FALSE	36	10	0	27	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND1	3	2	MT-ND4	1269	chrM:11028:+	MT-ND1	5450	chrM:3378:+	INCL_NON_REF_SPLICE	YES	18006	0	0	1	0.0276	0.0184	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PANC0403_PANCREAS	0	1	0.046	FALSE	51	51	3	16	0	FALSE	ACH-000235
PANC0403_PANCREAS	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0276	0.0184	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PANC0403_PANCREAS	0.83	1	0.046	FALSE	467	2173	244	435	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND3--MT-ATP8	3	1	MT-ND3	1094	chrM:10152:+	MT-ATP8	4474	chrM:8493:+	INCL_NON_REF_SPLICE	YES	187	1160	0.02	0	0.0276	0.0092	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0403_PANCREAS	0	0.02	0.0368	FALSE	351	233	23	137	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND4--MT-ND1	3	1	MT-ND4	1285	chrM:11044:+	MT-ND1	5862	chrM:3790:+	INCL_NON_REF_SPLICE	YES	18376	268	0	0.01	0.0276	0.0092	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PANC0403_PANCREAS	0	0.01	0.0368	FALSE	51	51	3	16	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-ND5	3	1	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	3	2819	0.57	0	0.0276	0.0092	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0403_PANCREAS	0	0.57	0.0368	FALSE	101	855	57	72	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-ND5	3	1	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	1	855	0.8	0	0.0276	0.0092	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0403_PANCREAS	0	0.8	0.0368	FALSE	101	855	57	72	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	3	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0276	0.0092	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	0.8	1	0.0368	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	1	5	0.8	0.44	0.0276	0.0092	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0403_PANCREAS	0.44	0.8	0.0368	FALSE	25	145	6	90	0	FALSE	ACH-000235
PANC0403_PANCREAS	ATRX--PGK1	3	0	ATRX	1235	chrX:77041468:-	PGK1	52000	chrX:77365364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1	PANC0403_PANCREAS	1	1	0.0276	TRUE	0	1	0	9	0	TRUE	ACH-000235
PANC0403_PANCREAS	MT-CO2--MT-CO1	3	0	MT-CO2	1276	chrM:7861:+	MT-CO1	6181	chrM:7400:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0403_PANCREAS	1	1	0.0276	FALSE	36	10	0	27	0	FALSE	ACH-000235
PANC0403_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0403_PANCREAS	1	1	0.0276	FALSE	499	1288	110	792	0	FALSE	ACH-000235
PANC0403_PANCREAS	PTMS--MT-ND5	3	0	PTMS	4825	chr12:6879808:+	MT-ND5	9852	chrM:14055:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	PTMS->chr12:6874682-6880116:+,parathymosin,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0403_PANCREAS	1	1	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000235
PANC0403_PANCREAS	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	6	0	0.45	1	0.0184	0.0276	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PANC0403_PANCREAS	0.45	1	0.046	FALSE	407	2205	196	549	0	FALSE	ACH-000235
PANC0403_PANCREAS	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	1	19	0.8	0.17	0.0184	0.0184	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PANC0403_PANCREAS	0.17	0.8	0.0368	FALSE	0	23	1	67	0	FALSE	ACH-000235
PANC0403_PANCREAS	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	25	0.8	0.14	0.0184	0.0184	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PANC0403_PANCREAS	0.14	0.8	0.0368	FALSE	16	356	14	466	0	FALSE	ACH-000235
PANC0403_PANCREAS	CMTM8--CMTM7	2	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	38	100	0.07	0.03	0.0184	0.0092	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	PANC0403_PANCREAS	0.03	0.07	0.0276	FALSE	118	557	29	88	0	FALSE	ACH-000235
PANC0403_PANCREAS	C17orf76-AS1--DOCK1	2	0	C17orf76-AS1	1593	chr17:16342728:+	DOCK1	14358	chr10:128768966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	C17orf76-AS1->chr17:16342136-16381992:+,DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1	PANC0403_PANCREAS	1	1	0.0184	TRUE	0	3	0	2	1	TRUE	ACH-000235
PANC0403_PANCREAS	C4orf19--SDAD1	2	0	C4orf19	2150	chr4:37559698:+	SDAD1	25241	chr4:76882461:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	C4orf19->chr4:37455563-37625117:+,chromosome_4_open_reading_frame_19,SDAD1->SDA1_domain_containing_1,chr4:76862103-76912115:-	PANC0403_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000235
PANC0403_PANCREAS	CCDC122--ENOX1	2	0	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	PANC0403_PANCREAS	1	1	0.0184	FALSE	39	52	2	34	0	FALSE	ACH-000235
PANC0403_PANCREAS	LAMA3--ESCO1	2	0	LAMA3	59658	chr18:21489259:+	ESCO1	86930	chr18:19164401:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,ESCO1->chr18:19109242-19180845:-,establishment_of_sister_chromatid_cohesion_N-acetyltransferase_1	PANC0403_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000235
PANC0403_PANCREAS	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PANC0403_PANCREAS	1	1	0.0184	TRUE	458	1351	185	561	0	FALSE	ACH-000235
PANC0403_PANCREAS	SCAPER--TSPAN3	2	0	SCAPER	7921	chr15:77134075:-	TSPAN3	55522	chr15:77348597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	SCAPER->S-phase_cyclin_A-associated_protein_in_the_ER,chr15:76640526-77197785:-,TSPAN3->chr15:77336359-77376326:-,tetraspanin_3	PANC0403_PANCREAS	1	1	0.0184	TRUE	0	1	0	1	1	TRUE	ACH-000235
PANC0403_PANCREAS	SMAGP--EYA3	2	0	SMAGP	5866	chr12:51640535:-	EYA3	25508	chr1:28323889:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	SMAGP->chr12:51638342-51664674:-,small_cell_adhesion_glycoprotein,EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-	PANC0403_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000235
PANC0403_PANCREAS	THEM4--SEC61G	2	0	THEM4	1449	chr1:151881836:-	SEC61G	15390	chr7:54825287:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	THEM4->chr1:151846060-151882284:-,thioesterase_superfamily_member_4,SEC61G->Sec61_translocon_gamma_subunit,chr7:54819943-54827667:-	PANC0403_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000235
PANC0403_PANCREAS	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PANC0403_PANCREAS	1	1	0.0184	TRUE	62	24	1	171	0	FALSE	ACH-000235
PANC0403_PANCREAS	RP11-120D5.1--MID1	1	3	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	25	0.8	0.14	0.0092	0.0276	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PANC0403_PANCREAS	0.14	0.8	0.0368	FALSE	2	31	0	60	0	FALSE	ACH-000235
PANC0403_PANCREAS	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	25	0.75	0.11	0.0092	0.0184	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PANC0403_PANCREAS	0.11	0.75	0.0276	FALSE	0	48	1	163	0	FALSE	ACH-000235
PANC0403_PANCREAS	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1325	64	0	0.03	0.0092	0.0092	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	PANC0403_PANCREAS	0	0.03	0.0184	FALSE	6	50	7	115	0	FALSE	ACH-000235
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	162	35	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2346	0.2667	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.5013	TRUE	508	994	45	981	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	99	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	113	3	0.47	0.97	0.7545	0.0076	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.97	0.7621	TRUE	519	3926	326	965	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DUSP22--STMND1	88	19	DUSP22	4048	chr6:311962:+	STMND1	21368	chr6:17115193:+	ONLY_REF_SPLICE	YES	69	0	0.61	1	0.6707	0.1448	DUSP22->chr6:291630-351355:+,dual_specificity_phosphatase_22,STMND1->chr6:17102489-17131603:+,stathmin_domain_containing_1	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	1	0.8155	TRUE	0	0	0	1	0	TRUE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	71	17	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	29	30	0.75	0.75	0.5411	0.1296	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.75	0.6707	TRUE	181	1564	124	196	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	74	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.564	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.564	TRUE	0	0	0	518	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	49	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3734	0.0457	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4191	FALSE	462	80	0	856	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	20	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2387	0	0.01	1	0.1524	0.0076	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.16	FALSE	13	9	0	364	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	9	42	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	7	4	0.88	0.93	0.0686	0.3201	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.93	0.3887	FALSE	189	492	56	216	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	18	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2379	0	0.01	1	0.1372	0.0152	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1524	FALSE	13	9	0	364	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	43	MT-CO3	1083	chrM:9289:+	MT-ATP6	4730	chrM:8472:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0457	0.3277	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3734	FALSE	189	492	56	216	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	16	0	ZNF654	1688	chr3:88188941:+	HMGB2	12525	chr4:174253314:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1219	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1219	TRUE	0	0	0	518	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	15	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1143	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1143	TRUE	0	0	0	434	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	15	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1143	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1143	FALSE	0	0	0	189	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	42	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	9	4	0.84	0.92	0.0305	0.3201	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	0.92	0.3506	FALSE	189	492	56	216	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	13	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0991	0.0305	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1296	FALSE	462	80	0	856	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	42	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.96	0.0229	0.3201	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.343	FALSE	189	492	56	216	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	12	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0915	0.0076	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0991	FALSE	499	1288	110	792	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ND4L	10	4	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	827	0	0.02	1	0.0762	0.0305	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.1067	FALSE	1	1	0	107	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTDSP1--IMPDH1P10	10	3	CTDSP1	6162	chr2:219268140:+	IMPDH1P10	12721	chr2:202003716:-	INCL_NON_REF_SPLICE	YES	109	0	0.11	1	0.0762	0.0229	GTEx_FI:{Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},CTDSP1->CTD_small_phosphatase_1,chr2:219262979-219270664:+,IMPDH1P10->IMP_(inosine_monophosphate)_dehydrogenase_1_pseudogene_10,chr2:202002239-202004750:-	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0991	TRUE	1	1	0	1	1	TRUE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPLP0--MT-CO3	8	2	RPLP0	3286	chr12:120636753:-	MT-CO3	8588	chrM:9244:+	INCL_NON_REF_SPLICE	YES	8333	0	0	1	0.061	0.0152	RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0762	FALSE	0	0	0	1	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	5	MT-ATP6	1265	chrM:8791:+	MT-CO1	5019	chrM:6241:+	INCL_NON_REF_SPLICE	YES	8617	11518	0	0	0.0457	0.0381	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0838	FALSE	183	104	9	328	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0.0076	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0609	FALSE	499	1288	110	792	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	6	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	49	12	0.17	0.45	0.0457	0.0305	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.45	0.0762	TRUE	267	562	48	632	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A5--ATP5G2	7	0	SLC7A5	8052	chr16:87871490:-	ATP5G2	21321	chr12:54066421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0533	TRUE	0	0	0	7	0	TRUE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	14	MT-CO3	1020	chrM:9226:+	MT-ATP6	5185	chrM:8927:+	INCL_NON_REF_SPLICE	YES	0	45	1	0.27	0.0229	0.1067	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.1296	FALSE	189	492	56	216	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPLP0--MT-CO3	5	6	RPLP0	3320	chr12:120636719:-	MT-CO3	8622	chrM:9278:+	INCL_NON_REF_SPLICE	YES	8209	0	0	1	0.0381	0.0457	RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0838	FALSE	0	0	0	1	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	7	0	0.5	1	0.0457	0.0076	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0533	FALSE	189	492	56	216	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0457	FALSE	189	492	56	216	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0381	0.0076	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0457	FALSE	499	1288	110	792	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPLP0--MT-CO3	4	5	RPLP0	3307	chr12:120636732:-	MT-CO3	8609	chrM:9265:+	INCL_NON_REF_SPLICE	YES	8408	0	0	1	0.0305	0.0381	RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0686	FALSE	0	0	0	1	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INCENP--HMHA1	5	0	INCENP	10419	chr11:61912555:+	HMHA1	28778	chr19:1077958:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0381	0	INCENP->chr11:61891445-61920635:+,inner_centromere_protein,HMHA1->chr19:1065922-1086627:+,histocompatibility_(minor)_HA-1	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A5--MT-ND1	5	0	SLC7A5	13719	chr16:87864490:-	MT-ND1	17596	chrM:3322:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0381	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0381	FALSE	0	0	0	11	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0229	0.0533	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0762	FALSE	462	80	0	856	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	4929	12169	0	0	0.0305	0.0152	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0457	FALSE	183	104	9	328	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	4	2	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	108	0	0.05	1	0.0305	0.0152	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0457	TRUE	61	154	6	19	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	6604	8754	0	0	0.0305	0.0076	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0381	FALSE	183	104	9	328	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	4	1	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	108	0	0.04	1	0.0305	0.0076	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0381	TRUE	30	67	4	15	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0305	FALSE	189	492	56	216	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0305	FALSE	189	492	56	216	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0229	0.0305	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.0534	FALSE	499	1288	110	792	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SURF4--RPLP1	4	0	SURF4	7211	chr9:136229387:-	RPLP1	11308	chr15:69745157:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	SURF4->chr9:136228325-136242970:-,surfeit_4,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0305	TRUE	0	0	0	4	0	TRUE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	48	13	0.11	0.32	0.0229	0.0229	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.32	0.0458	TRUE	267	562	48	632	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTDSP1--IMPDH1P10	3	3	CTDSP1	6162	chr2:219268140:+	IMPDH1P10	12724	chr2:202003713:-	INCL_NON_REF_SPLICE	YES	109	0	0.05	1	0.0229	0.0229	GTEx_FI:{Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},CTDSP1->CTD_small_phosphatase_1,chr2:219262979-219270664:+,IMPDH1P10->IMP_(inosine_monophosphate)_dehydrogenase_1_pseudogene_10,chr2:202002239-202004750:-	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0458	TRUE	1	1	0	1	1	TRUE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DUSP22--STMND1	2	6	DUSP22	2965	chr6:304661:+	STMND1	21368	chr6:17115193:+	ONLY_REF_SPLICE	YES	21	0	0.28	1	0.0152	0.0457	DUSP22->chr6:291630-351355:+,dual_specificity_phosphatase_22,STMND1->chr6:17102489-17131603:+,stathmin_domain_containing_1	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	4905	11849	0	0	0.0229	0.0152	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0381	FALSE	183	104	9	328	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	4892	12107	0	0	0.0229	0.0152	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0381	FALSE	183	104	9	328	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	3	2	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	840	0	0.01	1	0.0229	0.0152	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0381	FALSE	0	0	0	189	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--SUMO2	3	0	MT-CO1	1592	chrM:6495:+	SUMO2	5567	chr17:73179054:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0229	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	FALSE	0	0	0	12	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--SUMO2	3	0	MT-CO1	1612	chrM:6515:+	SUMO2	5590	chr17:73179031:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0229	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	FALSE	0	0	0	12	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0229	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0229	FALSE	462	80	0	856	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	3	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	NO	49	0	0.09	1	0.0152	0.0229	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.0381	FALSE	272	151	14	158	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR2--DHX34	2	0	GLTSCR2	1262	chr19:48249040:+	DHX34	29491	chr19:47885237:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:2=pct:3.8],Breast=[count:2=pct:1.8],Cervix_Uteri=[count:1=pct:12.5],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=4;pct=0.05%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hippocampus=1,Whole_Blood=1,Spleen=1},GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	14	43	2	13	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS9--CLASRP	2	0	RPS9	1868	chr19:54705477:+	CLASRP	25878	chr19:45572324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	RPS9->chr19:54704610-54752862:+,ribosomal_protein_S9,CLASRP->CLK4_associating_serine/arginine_rich_protein,chr19:45542298-45574214:+	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	0	0	1	0	TRUE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSBP1--MGAM	2	0	SSBP1	9443	chr7:141450184:+	MGAM	20665	chr7:141705329:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0152	0	SSBP1->chr7:141438121-141487722:+,single_stranded_DNA_binding_protein_1,MGAM->chr7:141607613-141806547:+,maltase-glucoamylase	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0152	TRUE	0	1	0	7	1	TRUE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1A1--XPOT	1	2	EEF1A1	5554	chr6:74228421:-	XPOT	13796	chr12:64803742:+	ONLY_REF_SPLICE	YES	22180	268	0	0.01	0.0076	0.0152	EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1,XPOT->chr12:64798130-64844907:+,exportin_for_tRNA	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0076	0.0152	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0228	TRUE	62	24	1	171	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	1	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	26	30	0.07	0.06	0.0076	0.0076	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.07	0.0152	TRUE	105	90	7	93	0	FALSE	ACH-000198
EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL27A--ABL1	1	1	RPL27A	3482	chr11:8706439:+	ABL1	17542	chr9:133738150:+	ONLY_REF_SPLICE	YES	2657	112	0	0.02	0.0076	0.0076	RPL27A->chr11:8703958-8736306:+,ribosomal_protein_L27a,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	EOL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0152	FALSE	0	0	0	1	0	FALSE	ACH-000198
MESSA_SOFT_TISSUE	TIMM23B--LINC00843	83	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3664	0.2963	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MESSA_SOFT_TISSUE	1	1	1.6627	TRUE	508	994	45	981	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	NAMPT--CTB-111H14.1	51	26	NAMPT	16160	chr7:105893463:-	CTB-111H14.1	31883	chr7:106131576:-	ONLY_REF_SPLICE	YES	175	0	0.31	1	0.8396	0.428	LOCAL_REARRANGEMENT:-:[85925],NAMPT->chr7:105888731-105926772:-,nicotinamide_phosphoribosyltransferase,CTB-111H14.1->chr7:106012697-106410653:-	MESSA_SOFT_TISSUE	0.31	1	1.2676	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	TIMM23--RP11-464F9.1	50	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	274	3	0.16	0.94	0.8231	0.0165	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MESSA_SOFT_TISSUE	0.16	0.94	0.8396	TRUE	519	3926	326	965	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-TA--MT-TN	46	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7573	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MESSA_SOFT_TISSUE	1	1	0.7573	FALSE	369	2501	205	193	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-TA--MT-TC	36	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5927	0.0659	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MESSA_SOFT_TISSUE	1	1	0.6586	FALSE	462	80	0	856	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	TANGO6--SNTB2	30	10	TANGO6	1108	chr16:68877614:+	SNTB2	35697	chr16:69304046:+	ONLY_REF_SPLICE	YES	8	9	0.83	0.82	0.4939	0.1646	TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog,SNTB2->chr16:69221032-69342955:+,syntrophin_beta_2	MESSA_SOFT_TISSUE	0.82	0.83	0.6585	TRUE	0	1	0	1	1	TRUE	ACH-000449
MESSA_SOFT_TISSUE	NAMPT--CTB-111H14.1	21	35	NAMPT	16160	chr7:105893463:-	CTB-111H14.1	29661	chr7:106161265:-	ONLY_REF_SPLICE	YES	175	0	0.24	1	0.3457	0.5762	LOCAL_REARRANGEMENT:-:[85925],NAMPT->chr7:105888731-105926772:-,nicotinamide_phosphoribosyltransferase,CTB-111H14.1->chr7:106012697-106410653:-	MESSA_SOFT_TISSUE	0.24	1	0.9219	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	RP11-680G10.1--GSE1	22	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.84	0.3622	0.1482	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MESSA_SOFT_TISSUE	0.84	1	0.5104	TRUE	458	1351	185	561	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-ND6--MT-TE	21	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3457	0.0165	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MESSA_SOFT_TISSUE	1	1	0.3622	FALSE	499	1288	110	792	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	18	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	7	15	0.78	0.62	0.2963	0.1152	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MESSA_SOFT_TISSUE	0.62	0.78	0.4115	FALSE	515	4851	409	746	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	RP11-680G10.1--GSE1	18	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	17	1	0.56	0.2963	0.0659	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MESSA_SOFT_TISSUE	0.56	1	0.3622	TRUE	465	1949	224	605	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-TA--MT-TN	9	37	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1482	0.6091	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MESSA_SOFT_TISSUE	1	1	0.7573	FALSE	369	2501	205	193	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MIR940--TSC2	15	5	MIR940	1689	chr16:2318844:+	TSC2	9627	chr16:2100401:+	ONLY_REF_SPLICE	YES	2	40	0.91	0.33	0.2469	0.0823	MIR940->chr16:2318156-2323419:+,microRNA_940,TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2	MESSA_SOFT_TISSUE	0.33	0.91	0.3292	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	PCAT1--RP11-382A18.2	14	5	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.2305	0.0823	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	MESSA_SOFT_TISSUE	0.95	1	0.3128	TRUE	4	84	1	46	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	C15orf57--CBX3	11	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	105	2	0.19	0.92	0.1811	0.214	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MESSA_SOFT_TISSUE	0.19	0.92	0.3951	TRUE	267	562	48	632	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MIR940--TSC2	12	1	MIR940	1111	chr16:2318266:+	TSC2	9627	chr16:2100401:+	ONLY_REF_SPLICE	YES	0	40	1	0.25	0.1976	0.0165	MIR940->chr16:2318156-2323419:+,microRNA_940,TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2	MESSA_SOFT_TISSUE	0.25	1	0.2141	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	MT-TA--MT-TN	4	33	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0.5433	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MESSA_SOFT_TISSUE	1	1	0.6092	FALSE	369	2501	205	193	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	RHEB--PRKAG2	9	12	RHEB	7545	chr7:151174419:-	PRKAG2	29978	chr7:151292540:-	ONLY_REF_SPLICE	YES	460	108	0.04	0.16	0.1482	0.1976	LOCAL_REARRANGEMENT:-:[35991],RHEB->Ras_homolog_enriched_in_brain,chr7:151163098-151217206:-,PRKAG2->chr7:151253197-151574210:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_2	MESSA_SOFT_TISSUE	0.04	0.16	0.3458	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	C4orf29--LARP1B	8	14	C4orf29	1301	chr4:128886761:+	LARP1B	37893	chr4:129083349:+	ONLY_REF_SPLICE	YES	16	4	0.58	0.85	0.1317	0.2305	NEIGHBORS[21557],C4orf29->chr4:128886461-128960866:+,LARP1B->La_ribonucleoprotein_domain_family_member_1B,chr4:128982423-129144086:+	MESSA_SOFT_TISSUE	0.58	0.85	0.3622	FALSE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-TA--MT-TN	5	26	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0823	0.428	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MESSA_SOFT_TISSUE	1	1	0.5103	FALSE	369	2501	205	193	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-TA--MT-TN	4	24	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0.3951	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MESSA_SOFT_TISSUE	1	1	0.461	FALSE	369	2501	205	193	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-TA--MT-TN	10	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1646	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MESSA_SOFT_TISSUE	1	1	0.1646	FALSE	369	2501	205	193	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-TA--MT-TN	5	14	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0823	0.2305	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MESSA_SOFT_TISSUE	1	1	0.3128	FALSE	369	2501	205	193	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-CO3--MT-ATP6	5	12	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.94	0.0823	0.1976	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MESSA_SOFT_TISSUE	0.94	1	0.2799	FALSE	189	492	56	216	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-TA--MT-TN	8	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1317	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MESSA_SOFT_TISSUE	1	1	0.1317	FALSE	369	2501	205	193	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MARVELD1--MEGF8	7	0	MARVELD1	5218	chr10:99477355:+	MEGF8	19401	chr19:42854299:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1152	0	GTEx_FI:{Skin=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},MARVELD1->MARVEL_domain_containing_1,chr10:99472930-99477907:+,MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8	MESSA_SOFT_TISSUE	1	1	0.1152	TRUE	3	138	13	2	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-CO3--MT-ATP6	7	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1152	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MESSA_SOFT_TISSUE	1	1	0.1152	FALSE	189	492	56	216	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-CO3--MT-ATP6	7	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1152	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MESSA_SOFT_TISSUE	1	1	0.1152	FALSE	189	492	56	216	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	RHEB--PRKAG2	4	12	RHEB	7545	chr7:151174419:-	PRKAG2	29981	chr7:151292537:-	ONLY_REF_SPLICE	YES	460	108	0.03	0.13	0.0659	0.1976	LOCAL_REARRANGEMENT:-:[35991],RHEB->Ras_homolog_enriched_in_brain,chr7:151163098-151217206:-,PRKAG2->chr7:151253197-151574210:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_2	MESSA_SOFT_TISSUE	0.03	0.13	0.2635	TRUE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	RHEB--PRKAG2	5	8	RHEB	6462	chr7:151181823:-	PRKAG2	29978	chr7:151292540:-	ONLY_REF_SPLICE	YES	352	108	0.04	0.11	0.0823	0.1317	LOCAL_REARRANGEMENT:-:[35991],RHEB->Ras_homolog_enriched_in_brain,chr7:151163098-151217206:-,PRKAG2->chr7:151253197-151574210:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_2	MESSA_SOFT_TISSUE	0.04	0.11	0.214	TRUE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-CO3--MT-ATP6	3	15	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	4	4	0.82	0.82	0.0494	0.2469	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MESSA_SOFT_TISSUE	0.82	0.82	0.2963	FALSE	189	492	56	216	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-ND6--MT-TE	6	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.0988	0.0494	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MESSA_SOFT_TISSUE	0.69	1	0.1482	FALSE	499	1288	110	792	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	5	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	7	1	0.63	0.92	0.0823	0.1152	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MESSA_SOFT_TISSUE	0.63	0.92	0.1975	FALSE	407	2205	196	549	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	4	11	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	15	1	0.5	0.0659	0.1811	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MESSA_SOFT_TISSUE	0.5	1	0.247	FALSE	467	2173	244	435	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	C4orf29--LARP1B	5	6	C4orf29	1301	chr4:128886761:+	LARP1B	41028	chr4:129100561:+	ONLY_REF_SPLICE	YES	16	18	0.41	0.38	0.0823	0.0988	NEIGHBORS[21557],C4orf29->chr4:128886461-128960866:+,LARP1B->La_ribonucleoprotein_domain_family_member_1B,chr4:128982423-129144086:+	MESSA_SOFT_TISSUE	0.38	0.41	0.1811	FALSE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	C15orf57--CBX3	3	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	101	2	0.12	0.88	0.0494	0.1811	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MESSA_SOFT_TISSUE	0.12	0.88	0.2305	TRUE	267	562	48	632	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	PPP1R1C--SSFA2	5	3	PPP1R1C	5953	chr2:182852626:+	SSFA2	20131	chr2:182756759:+	INCL_NON_REF_SPLICE	YES	467	28	0.02	0.22	0.0823	0.0494	LOCAL_REARRANGEMENT:+:[23503],PPP1R1C->chr2:182818968-182996125:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1C,SSFA2->chr2:182756560-182795465:+,sperm_specific_antigen_2	MESSA_SOFT_TISSUE	0.02	0.22	0.1317	TRUE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-CO3--MT-ATP6	4	6	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.91	0.0659	0.0988	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MESSA_SOFT_TISSUE	0.91	1	0.1647	FALSE	189	492	56	216	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	RP11-275N1.1--NEBL	5	2	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	6	13	0.54	0.35	0.0823	0.0329	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	MESSA_SOFT_TISSUE	0.35	0.54	0.1152	TRUE	0	2	0	25	2	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-ND6--MT-TE	5	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0823	0.0165	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MESSA_SOFT_TISSUE	1	1	0.0988	FALSE	499	1288	110	792	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	C4orf29--LARP1B	2	12	C4orf29	1301	chr4:128886761:+	LARP1B	40053	chr4:129099586:+	ONLY_REF_SPLICE	YES	16	7	0.47	0.67	0.0329	0.1976	NEIGHBORS[21557],C4orf29->chr4:128886461-128960866:+,LARP1B->La_ribonucleoprotein_domain_family_member_1B,chr4:128982423-129144086:+	MESSA_SOFT_TISSUE	0.47	0.67	0.2305	FALSE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	EML1--YY1	4	3	EML1	5093	chr14:100259880:+	YY1	44301	chr14:100741035:+	ONLY_REF_SPLICE	YES	73	155	0.09	0.04	0.0659	0.0494	EML1->chr14:100204030-100408397:+,echinoderm_microtubule_associated_protein_like_1,YY1->YY1_transcription_factor,chr14:100704635-100749129:+	MESSA_SOFT_TISSUE	0.04	0.09	0.1153	TRUE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-CO3--MT-ATP6	4	2	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0.0329	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MESSA_SOFT_TISSUE	1	1	0.0988	FALSE	189	492	56	216	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	C4orf29--LARP1B	1	13	C4orf29	1751	chr4:128887211:+	LARP1B	39017	chr4:129098027:+	ONLY_REF_SPLICE	YES	19	6	0.42	0.7	0.0165	0.214	NEIGHBORS[21557],C4orf29->chr4:128886461-128960866:+,LARP1B->La_ribonucleoprotein_domain_family_member_1B,chr4:128982423-129144086:+	MESSA_SOFT_TISSUE	0.42	0.7	0.2305	FALSE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-CO3--MT-ATP6	4	1	MT-CO3	1396	chrM:9602:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.0659	0.0165	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MESSA_SOFT_TISSUE	0.56	1	0.0824	FALSE	189	492	56	216	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0.0165	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MESSA_SOFT_TISSUE	1	1	0.0824	FALSE	462	80	0	856	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	TRPM7--SPPL2A	4	1	TRPM7	2365	chr15:50955164:-	SPPL2A	59238	chr15:51014398:-	ONLY_REF_SPLICE	YES	231	158	0.02	0.03	0.0659	0.0165	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:-:[20494],TRPM7->chr15:50844670-50979012:-,transient_receptor_potential_cation_channel_subfamily_M_member_7,SPPL2A->chr15:50999506-51058005:-,signal_peptide_peptidase_like_2A	MESSA_SOFT_TISSUE	0.02	0.03	0.0824	TRUE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MESSA_SOFT_TISSUE	1	1	0.0659	FALSE	499	1288	110	792	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	MT-TA--MT-TC	3	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0494	0.0659	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MESSA_SOFT_TISSUE	1	1	0.1153	FALSE	462	80	0	856	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	RHEB--PRKAG2	2	8	RHEB	6462	chr7:151181823:-	PRKAG2	29981	chr7:151292537:-	ONLY_REF_SPLICE	YES	352	108	0.03	0.08	0.0329	0.1317	LOCAL_REARRANGEMENT:-:[35991],RHEB->Ras_homolog_enriched_in_brain,chr7:151163098-151217206:-,PRKAG2->chr7:151253197-151574210:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_2	MESSA_SOFT_TISSUE	0.03	0.08	0.1646	TRUE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	RP11-120D5.1--MID1	3	4	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	51	0.5	0.12	0.0494	0.0659	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MESSA_SOFT_TISSUE	0.12	0.5	0.1153	FALSE	2	31	0	60	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	CRTC1--KLHL26	3	3	CRTC1	1152	chr19:18794638:+	KLHL26	28197	chr19:18775071:+	ONLY_REF_SPLICE	YES	16	3	0.27	0.67	0.0494	0.0494	LOCAL_REARRANGEMENT:+:[13178],CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,KLHL26->chr19:18747775-18781309:+,kelch_like_family_member_26	MESSA_SOFT_TISSUE	0.27	0.67	0.0988	TRUE	0	3	0	1	3	TRUE	ACH-000449
MESSA_SOFT_TISSUE	PPP1R1C--SSFA2	3	2	PPP1R1C	5953	chr2:182852626:+	SSFA2	40337	chr2:182792888:+	ONLY_REF_SPLICE	YES	467	338	0.01	0.01	0.0494	0.0329	LOCAL_REARRANGEMENT:+:[23503],PPP1R1C->chr2:182818968-182996125:+,protein_phosphatase_1_regulatory_inhibitor_subunit_1C,SSFA2->chr2:182756560-182795465:+,sperm_specific_antigen_2	MESSA_SOFT_TISSUE	0.01	0.01	0.0823	FALSE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	CELSR1--CERK	3	1	CELSR1	4544	chr22:46929524:-	CERK	56504	chr22:47091212:-	ONLY_REF_SPLICE	YES	16	55	0.2	0.07	0.0494	0.0165	CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-,CERK->ceramide_kinase,chr22:47080308-47134158:-	MESSA_SOFT_TISSUE	0.07	0.2	0.0659	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	EML1--YY1	3	1	EML1	1168	chr14:100204197:+	YY1	44301	chr14:100741035:+	ONLY_REF_SPLICE	YES	39	155	0.09	0.03	0.0494	0.0165	EML1->chr14:100204030-100408397:+,echinoderm_microtubule_associated_protein_like_1,YY1->YY1_transcription_factor,chr14:100704635-100749129:+	MESSA_SOFT_TISSUE	0.03	0.09	0.0659	TRUE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	C4orf29--LARP1B	2	4	C4orf29	1301	chr4:128886761:+	LARP1B	42135	chr4:129120594:+	ONLY_REF_SPLICE	YES	16	28	0.27	0.18	0.0329	0.0659	NEIGHBORS[21557],C4orf29->chr4:128886461-128960866:+,LARP1B->La_ribonucleoprotein_domain_family_member_1B,chr4:128982423-129144086:+	MESSA_SOFT_TISSUE	0.18	0.27	0.0988	FALSE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	NAMPT--CTB-111H14.1	2	3	NAMPT	16160	chr7:105893463:-	CTB-111H14.1	34290	chr7:106114428:-	ONLY_REF_SPLICE	YES	175	4	0.03	0.56	0.0329	0.0494	LOCAL_REARRANGEMENT:-:[85925],NAMPT->chr7:105888731-105926772:-,nicotinamide_phosphoribosyltransferase,CTB-111H14.1->chr7:106012697-106410653:-	MESSA_SOFT_TISSUE	0.03	0.56	0.0823	TRUE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	RP11-120D5.1--MID1	2	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	9	51	0.36	0.09	0.0329	0.0494	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MESSA_SOFT_TISSUE	0.09	0.36	0.0823	FALSE	16	356	14	466	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	7	0	0.53	1	0.0165	0.1152	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MESSA_SOFT_TISSUE	0.53	1	0.1317	FALSE	275	511	55	178	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	DNAJB6--UBE3C	2	2	DNAJB6	20269	chr7:157178305:+	UBE3C	60297	chr7:157060279:+	ONLY_REF_SPLICE	YES	161	78	0.02	0.05	0.0329	0.0329	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[66009],DNAJB6->DnaJ_heat_shock_protein_family_(Hsp40)_member_B6,chr7:157128075-157210133:+,UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C	MESSA_SOFT_TISSUE	0.02	0.05	0.0658	TRUE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	RHEB--PRKAG2	2	2	RHEB	1661	chr7:151216546:-	PRKAG2	29978	chr7:151292540:-	ONLY_REF_SPLICE	YES	282	108	0.01	0.04	0.0329	0.0329	LOCAL_REARRANGEMENT:-:[35991],RHEB->Ras_homolog_enriched_in_brain,chr7:151163098-151217206:-,PRKAG2->chr7:151253197-151574210:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_2	MESSA_SOFT_TISSUE	0.01	0.04	0.0658	FALSE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	ACACA--SYNRG	2	0	ACACA	25394	chr17:35627642:-	SYNRG	88198	chr17:35937711:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,SYNRG->chr17:35874900-35969544:-,synergin,_gamma	MESSA_SOFT_TISSUE	1	1	0.0329	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	EIF4A2--ZMYND11	2	0	EIF4A2	1435	chr3:186501428:+	ZMYND11	12796	chr10:225934:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	MESSA_SOFT_TISSUE	1	1	0.0329	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	GLG1--PSMD7	2	0	GLG1	23838	chr16:74499574:-	PSMD7	41088	chr16:74338201:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,PSMD7->chr16:74330673-74340186:+,proteasome_26S_subunit,_non-ATPase_7	MESSA_SOFT_TISSUE	1	1	0.0329	TRUE	0	0	0	1	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	METAP1--EIF4E	2	0	METAP1	1248	chr4:99917018:+	EIF4E	28557	chr4:99823133:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	{Klijn_CCL:Sarcomatoid=1,Stomach=1},LOCAL_INVERSION:+:-:[64983],METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1,EIF4E->Oncogene{Bushman},chr4:99792835-99851788:-,eukaryotic_translation_initiation_factor_4E	MESSA_SOFT_TISSUE	1	1	0.0329	TRUE	0	1	0	7	1	TRUE	ACH-000449
MESSA_SOFT_TISSUE	RBM6--RHOA	2	0	RBM6	3185	chr3:50000118:+	RHOA	37115	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Lung=1,Pituitary=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	MESSA_SOFT_TISSUE	1	1	0.0329	TRUE	0	4	1	6	1	TRUE	ACH-000449
MESSA_SOFT_TISSUE	RP11-120D5.1--MID1	1	4	RP11-120D5.1	10152	chrX:10878163:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	7	29	0.42	0.15	0.0165	0.0659	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MESSA_SOFT_TISSUE	0.15	0.42	0.0824	FALSE	0	0	0	3	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	RP11-120D5.1--MID1	1	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	9	29	0.31	0.12	0.0165	0.0494	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MESSA_SOFT_TISSUE	0.12	0.31	0.0659	FALSE	0	23	1	67	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	RARB--AC133680.1	1	2	RARB	1244	chr3:25216066:+	AC133680.1	22874	chr3:25215610:+	ONLY_REF_SPLICE	YES	59	10	0.05	0.23	0.0165	0.0329	LOCAL_REARRANGEMENT:+:[27],RARB->Oncogene{Bushman},chr3:25215823-25639423:+,retinoic_acid_receptor_beta,AC133680.1->chr3:24729410-25215796:+	MESSA_SOFT_TISSUE	0.05	0.23	0.0494	TRUE	0	1	0	2	1	TRUE	ACH-000449
MESSA_SOFT_TISSUE	RP11-275N1.1--NEBL	1	2	RP11-275N1.1	3264	chr10:21657426:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	4	13	0.43	0.19	0.0165	0.0329	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	MESSA_SOFT_TISSUE	0.19	0.43	0.0494	TRUE	0	0	0	3	0	TRUE	ACH-000449
MESSA_SOFT_TISSUE	RPS6KB1--VMP1	1	2	RPS6KB1	7326	chr17:57992064:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	NO	74	568	0.04	0.01	0.0165	0.0329	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MESSA_SOFT_TISSUE	0.01	0.04	0.0494	FALSE	0	8	0	9	5	FALSE	ACH-000449
MESSA_SOFT_TISSUE	RPS6KB1--VMP1	1	2	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	NO	66	568	0.04	0.01	0.0165	0.0329	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MESSA_SOFT_TISSUE	0.01	0.04	0.0494	FALSE	0	9	0	11	6	FALSE	ACH-000449
MESSA_SOFT_TISSUE	ANKRD10--ING1	1	1	ANKRD10	1345	chr13:111567072:-	ING1	22718	chr13:111371576:+	ONLY_REF_SPLICE	YES	98	83	0.02	0.02	0.0165	0.0165	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Colon=[count:1=pct:0.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1},ANKRD10->ankyrin_repeat_domain_10,chr13:111530887-111567416:-,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	MESSA_SOFT_TISSUE	0.02	0.02	0.033	TRUE	2	0	0	4	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	CPSF6--C9orf3	1	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	186	223	0.01	0.01	0.0165	0.0165	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	MESSA_SOFT_TISSUE	0.01	0.01	0.033	FALSE	53	99	2	44	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	EMP1--RP11-377D9.3	1	1	EMP1	6825	chr12:13366755:+	RP11-377D9.3	14871	chr12:13172446:+	ONLY_REF_SPLICE	YES	3059	0	0	1	0.0165	0.0165	EMP1->Oncogene{Bushman},chr12:13349650-13369708:+,epithelial_membrane_protein_1,RP11-377D9.3->chr12:13153385-13193613:+	MESSA_SOFT_TISSUE	0	1	0.033	FALSE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	HAT1--AC104088.1	1	1	HAT1	9507	chr2:172823470:+	AC104088.1	18892	chr2:173188078:+	ONLY_REF_SPLICE	YES	116	0	0.02	1	0.0165	0.0165	HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1,AC104088.1->chr2:173180015-173188465:+	MESSA_SOFT_TISSUE	0.02	1	0.033	TRUE	0	0	0	1	0	FALSE	ACH-000449
MESSA_SOFT_TISSUE	RP11-275N1.1--NEBL	1	1	RP11-275N1.1	2205	chr10:21658896:-	NEBL	14143	chr10:21309130:-	ONLY_REF_SPLICE	YES	6	25	0.25	0.07	0.0165	0.0165	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	MESSA_SOFT_TISSUE	0.07	0.25	0.033	TRUE	0	0	0	3	0	TRUE	ACH-000449
CORL311_LUNG	PREP--RP1-302G2.5	914	549	PREP	2313	chr6:105845728:-	RP1-302G2.5	22375	chr6:44185187:+	ONLY_REF_SPLICE	YES	91	1	0.94	1	11.8701	7.1298	PREP->chr6:105725440-105850959:-,prolyl_endopeptidase,RP1-302G2.5->chr6:44184676-44185973:+	CORL311_LUNG	0.94	1	18.9999	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--ATG5	272	268	PVT1	1202	chr8:128806980:+	ATG5	35939	chr6:106649964:-	ONLY_REF_SPLICE	YES	287	1528	0.65	0.26	3.5325	3.4805	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	0.26	0.65	7.013	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	NCAM1--USP28	67	138	NCAM1	1390	chr11:112832386:+	USP28	69895	chr11:113674003:-	ONLY_REF_SPLICE	YES	489	354	0.3	0.37	0.8701	1.7922	NCAM1->chr11:112831997-113149158:+,neural_cell_adhesion_molecule_1,USP28->chr11:113668596-113746292:-,ubiquitin_specific_peptidase_28	CORL311_LUNG	0.3	0.37	2.6623	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	NCAM1--USP28	54	168	NCAM1	1390	chr11:112832386:+	USP28	69299	chr11:113674599:-	ONLY_REF_SPLICE	YES	489	465	0.31	0.32	0.7013	2.1818	NCAM1->chr11:112831997-113149158:+,neural_cell_adhesion_molecule_1,USP28->chr11:113668596-113746292:-,ubiquitin_specific_peptidase_28	CORL311_LUNG	0.31	0.32	2.8831	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--ATG5	14	277	PVT1	2457	chr8:128808254:+	ATG5	35939	chr6:106649964:-	ONLY_REF_SPLICE	YES	279	1528	0.51	0.16	0.1818	3.5974	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	0.16	0.51	3.7792	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--ATG5	11	272	PVT1	1202	chr8:128806980:+	ATG5	34504	chr6:106696119:-	ONLY_REF_SPLICE	YES	287	1470	0.5	0.16	0.1429	3.5325	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	0.16	0.5	3.6754	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--ATG5	6	280	PVT1	2520	chr8:128808317:+	ATG5	35939	chr6:106649964:-	ONLY_REF_SPLICE	YES	275	1528	0.51	0.16	0.0779	3.6364	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	0.16	0.51	3.7143	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	TTC12--CWF19L2	59	62	TTC12	18552	chr11:113230730:+	CWF19L2	42706	chr11:107263621:-	ONLY_REF_SPLICE	YES	187	145	0.39	0.45	0.7662	0.8052	TTC12->chr11:113185251-113254266:+,tetratricopeptide_repeat_domain_12,CWF19L2->CWF19-like_2,_cell_cycle_control_(S._pombe),chr11:107197071-107328572:-	CORL311_LUNG	0.39	0.45	1.5714	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--ATG5	1	288	PVT1	2520	chr8:128808317:+	ATG5	29968	chr6:106764141:-	ONLY_REF_SPLICE	YES	275	1066	0.51	0.21	0.013	3.7402	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	0.21	0.51	3.7532	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--ATG5	3	275	PVT1	1202	chr8:128806980:+	ATG5	29968	chr6:106764141:-	ONLY_REF_SPLICE	NO	287	1066	0.49	0.21	0.039	3.5714	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	0.21	0.49	3.6104	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	TIMM23B--LINC00843	62	39	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8052	0.5065	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CORL311_LUNG	1	1	1.3117	TRUE	508	994	45	981	0	FALSE	ACH-000187
CORL311_LUNG	PVT1--ATG5	3	273	PVT1	1202	chr8:128806980:+	ATG5	32262	chr6:106740981:-	ONLY_REF_SPLICE	YES	287	1795	0.49	0.13	0.039	3.5454	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	0.13	0.49	3.5844	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--ATG5	1	281	PVT1	5344	chr8:128864593:+	ATG5	35939	chr6:106649964:-	ONLY_REF_SPLICE	YES	268	1528	0.51	0.16	0.013	3.6493	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	0.16	0.51	3.6623	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	MT-ND6--MT-TE	62	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	6	0	0.91	1	0.8052	0.026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL311_LUNG	0.91	1	0.8312	FALSE	499	1288	110	792	0	FALSE	ACH-000187
CORL311_LUNG	NCAM1--USP28	51	32	NCAM1	1390	chr11:112832386:+	USP28	72238	chr11:113670137:-	ONLY_REF_SPLICE	YES	489	413	0.15	0.17	0.6623	0.4156	NCAM1->chr11:112831997-113149158:+,neural_cell_adhesion_molecule_1,USP28->chr11:113668596-113746292:-,ubiquitin_specific_peptidase_28	CORL311_LUNG	0.15	0.17	1.0779	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	DNAJC3--HS6ST3	42	50	DNAJC3	1199	chr13:96329591:+	HS6ST3	20799	chr13:97484744:+	ONLY_REF_SPLICE	YES	17	3	0.84	0.97	0.5455	0.6493	DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+,HS6ST3->chr13:96743093-97485671:+,heparan_sulfate_6-O-sulfotransferase_3	CORL311_LUNG	0.84	0.97	1.1948	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	TTC12--CWF19L2	43	27	TTC12	16906	chr11:113222929:+	CWF19L2	42706	chr11:107263621:-	ONLY_REF_SPLICE	YES	204	145	0.26	0.33	0.5584	0.3506	TTC12->chr11:113185251-113254266:+,tetratricopeptide_repeat_domain_12,CWF19L2->CWF19-like_2,_cell_cycle_control_(S._pombe),chr11:107197071-107328572:-	CORL311_LUNG	0.26	0.33	0.909	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	MT-ND6--MT-TE	39	0	MT-ND6	1051	chrM:14623:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5065	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL311_LUNG	1	1	0.5065	FALSE	499	1288	110	792	0	FALSE	ACH-000187
CORL311_LUNG	MT-TA--MT-TC	35	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4545	0.039	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL311_LUNG	1	1	0.4935	FALSE	462	80	0	856	0	FALSE	ACH-000187
CORL311_LUNG	TIMM23--RP11-464F9.1	34	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	273	16	0.12	0.7	0.4416	0.039	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CORL311_LUNG	0.12	0.7	0.4806	TRUE	519	3926	326	965	0	FALSE	ACH-000187
CORL311_LUNG	PVT1--MYC	24	33	PVT1	13955	chr8:129001537:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	155	1498	0.27	0.04	0.3117	0.4286	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CORL311_LUNG	0.04	0.27	0.7403	TRUE	0	0	0	3	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--MYC	18	56	PVT1	18060	chr8:129022690:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	48	1498	0.61	0.05	0.2338	0.7273	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CORL311_LUNG	0.05	0.61	0.9611	TRUE	0	0	0	3	0	TRUE	ACH-000187
CORL311_LUNG	SETD2--SCAP	24	29	SETD2	1114	chr3:47205344:-	SCAP	38996	chr3:47484581:-	ONLY_REF_SPLICE	YES	24	0	0.69	1	0.3117	0.3766	SETD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SET_domain_containing_2,chr3:47057919-47205457:-,SCAP->SREBF_chaperone,chr3:47455203-47518616:-	CORL311_LUNG	0.69	1	0.6883	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--MYC	22	33	PVT1	13955	chr8:129001537:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	155	1448	0.26	0.04	0.2857	0.4286	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CORL311_LUNG	0.04	0.26	0.7143	TRUE	0	0	0	3	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--MYC	13	56	PVT1	18060	chr8:129022690:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	48	1448	0.59	0.05	0.1688	0.7273	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CORL311_LUNG	0.05	0.59	0.8961	TRUE	0	0	0	3	0	TRUE	ACH-000187
CORL311_LUNG	IQCA1--KYNU	16	16	IQCA1	1286	chr2:237415900:-	KYNU	36653	chr2:143676178:+	ONLY_REF_SPLICE	YES	21	0	0.6	1	0.2078	0.2078	IQCA1->IQ_motif_containing_with_AAA_domain_1,chr2:237232794-237416185:-,KYNU->chr2:143635067-143799890:+,kynureninase	CORL311_LUNG	0.6	1	0.4156	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	MT-TA--MT-TC	19	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2468	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL311_LUNG	1	1	0.2468	FALSE	462	80	0	856	0	FALSE	ACH-000187
CORL311_LUNG	RP11-444D3.1--SOX5	18	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2338	0.039	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CORL311_LUNG	1	1	0.2728	TRUE	477	1352	189	275	0	FALSE	ACH-000187
CORL311_LUNG	ARHGAP23--PRTFDC1	18	0	ARHGAP23	1131	chr17:36584792:+	PRTFDC1	35735	chr10:25160992:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2338	0	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,PRTFDC1->chr10:25137536-25241533:-,phosphoribosyl_transferase_domain_containing_1	CORL311_LUNG	1	1	0.2338	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PREP--RP1-302G2.5	1	66	PREP	1238	chr6:105850722:-	RP1-302G2.5	22375	chr6:44185187:+	ONLY_REF_SPLICE	YES	22	1	0.75	0.99	0.013	0.8571	PREP->chr6:105725440-105850959:-,prolyl_endopeptidase,RP1-302G2.5->chr6:44184676-44185973:+	CORL311_LUNG	0.75	0.99	0.8701	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PVT1--MYC	3	57	PVT1	19222	chr8:129060855:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	14	1498	0.81	0.04	0.039	0.7403	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CORL311_LUNG	0.04	0.81	0.7793	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2208	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CORL311_LUNG	1	1	0.2208	TRUE	0	0	0	518	0	FALSE	ACH-000187
CORL311_LUNG	PVT1--MYC	2	57	PVT1	19222	chr8:129060855:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	14	1448	0.81	0.04	0.026	0.7403	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CORL311_LUNG	0.04	0.81	0.7663	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	ZNF124--RABGAP1L	13	13	ZNF124	1169	chr1:247335150:-	RABGAP1L	46118	chr1:174780970:+	ONLY_REF_SPLICE	YES	50	26	0.34	0.5	0.1688	0.1688	ZNF124->chr1:247285277-247335318:-,zinc_finger_protein_124,RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+	CORL311_LUNG	0.34	0.5	0.3376	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	RP11-1407O15.2--KIAA1217	13	9	RP11-1407O15.2	5790	chr17:36375100:-	KIAA1217	31487	chr10:24166335:+	ONLY_REF_SPLICE	YES	217	0	0.09	1	0.1688	0.1169	RP11-1407O15.2->chr17:36337717-36421858:-,KIAA1217->KIAA1217,chr10:23983675-24836772:+	CORL311_LUNG	0.09	1	0.2857	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	TTC12--CWF19L2	4	43	TTC12	18005	chr11:113230183:+	CWF19L2	42706	chr11:107263621:-	ONLY_REF_SPLICE	YES	179	145	0.21	0.24	0.0519	0.5584	TTC12->chr11:113185251-113254266:+,tetratricopeptide_repeat_domain_12,CWF19L2->CWF19-like_2,_cell_cycle_control_(S._pombe),chr11:107197071-107328572:-	CORL311_LUNG	0.21	0.24	0.6103	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	MT-ND6--MT-TE	14	2	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	6	0	0.73	1	0.1818	0.026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL311_LUNG	0.73	1	0.2078	FALSE	499	1288	110	792	0	FALSE	ACH-000187
CORL311_LUNG	MT-CO3--MT-ATP6	13	3	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	7	2	0.7	0.89	0.1688	0.039	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CORL311_LUNG	0.7	0.89	0.2078	FALSE	189	492	56	216	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND4--MT-ND4L	12	5	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	15718	0	0	1	0.1558	0.0649	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL311_LUNG	0	1	0.2207	FALSE	328	800	43	304	0	FALSE	ACH-000187
CORL311_LUNG	C15orf57--CBX3	9	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	42	59	0.35	0.28	0.1169	0.1818	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CORL311_LUNG	0.28	0.35	0.2987	TRUE	267	562	48	632	0	FALSE	ACH-000187
CORL311_LUNG	RP11-680G10.1--GSE1	11	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	23	1	0.42	0.1429	0.0779	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CORL311_LUNG	0.42	1	0.2208	TRUE	465	1949	224	605	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND4--MT-ND4L	10	9	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	7874	0	0	1	0.1299	0.1169	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL311_LUNG	0	1	0.2468	FALSE	344	827	44	306	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND4--MT-ND4L	9	13	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	1	0.81	0.96	0.1169	0.1688	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL311_LUNG	0.81	0.96	0.2857	FALSE	344	821	44	306	0	FALSE	ACH-000187
CORL311_LUNG	MT-CO3--MT-ATP6	11	4	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	12	2	0.56	0.88	0.1429	0.0519	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CORL311_LUNG	0.56	0.88	0.1948	FALSE	189	492	56	216	0	FALSE	ACH-000187
CORL311_LUNG	ZNF124--RABGAP1L	7	18	ZNF124	3031	chr1:247322308:-	RABGAP1L	46118	chr1:174780970:+	ONLY_REF_SPLICE	YES	48	26	0.34	0.49	0.0909	0.2338	ZNF124->chr1:247285277-247335318:-,zinc_finger_protein_124,RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+	CORL311_LUNG	0.34	0.49	0.3247	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	DNM1L--FGD4	8	11	DNM1L	1266	chr12:32832399:+	FGD4	36052	chr12:32717071:+	ONLY_REF_SPLICE	YES	157	80	0.11	0.19	0.1039	0.1429	LOCAL_REARRANGEMENT:+:[33150],DNM1L->chr12:32832134-32898486:+,dynamin_1-like,FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+	CORL311_LUNG	0.11	0.19	0.2468	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	RP11-680G10.1--GSE1	8	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	15	1	0.53	0.1039	0.1169	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CORL311_LUNG	0.53	1	0.2208	TRUE	458	1351	185	561	0	FALSE	ACH-000187
CORL311_LUNG	TTC12--CWF19L2	8	9	TTC12	15998	chr11:113222021:+	CWF19L2	42706	chr11:107263621:-	ONLY_REF_SPLICE	YES	303	145	0.05	0.1	0.1039	0.1169	TTC12->chr11:113185251-113254266:+,tetratricopeptide_repeat_domain_12,CWF19L2->CWF19-like_2,_cell_cycle_control_(S._pombe),chr11:107197071-107328572:-	CORL311_LUNG	0.05	0.1	0.2208	TRUE	0	0	0	1	0	FALSE	ACH-000187
CORL311_LUNG	AC017099.3--MGAT4A	8	7	AC017099.3	10770	chr2:98292391:+	MGAT4A	36179	chr2:99260516:-	ONLY_REF_SPLICE	YES	17	44	0.47	0.25	0.1039	0.0909	AC017099.3->chr2:98280680-98319527:+,MGAT4A->chr2:99235569-99347589:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_A	CORL311_LUNG	0.25	0.47	0.1948	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	MT-ND4--MT-ND4L	4	21	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	19	0	0.57	1	0.0519	0.2727	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL311_LUNG	0.57	1	0.3246	FALSE	344	826	44	306	0	FALSE	ACH-000187
CORL311_LUNG	CLEC16A--TNFRSF17	8	4	CLEC16A	11984	chr16:11097162:+	TNFRSF17	43262	chr16:12060052:+	ONLY_REF_SPLICE	YES	26	1	0.32	0.92	0.1039	0.0519	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,TNFRSF17->Oncogene{Bushman},chr16:12058964-12061925:+,tumor_necrosis_factor_receptor_superfamily_member_17	CORL311_LUNG	0.32	0.92	0.1558	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	MT-CO3--MT-ATP6	8	4	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.86	0.1039	0.0519	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CORL311_LUNG	0.86	1	0.1558	FALSE	189	492	56	216	0	FALSE	ACH-000187
CORL311_LUNG	MT-CO3--MT-ATP6	8	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	8	1	0.58	0.92	0.1039	0.039	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CORL311_LUNG	0.58	0.92	0.1429	FALSE	189	492	56	216	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND4--MT-ND4L	3	23	MT-ND4	1299	chrM:11058:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	YES	116	0	0.18	1	0.039	0.2987	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL311_LUNG	0.18	1	0.3377	FALSE	344	827	44	306	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND4--MT-ND4L	3	23	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	22	0	0.54	1	0.039	0.2987	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL311_LUNG	0.54	1	0.3377	FALSE	344	826	44	306	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND4--MT-ND4L	8	0	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1039	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL311_LUNG	1	1	0.1039	FALSE	344	827	44	306	0	FALSE	ACH-000187
CORL311_LUNG	SPSB4--ACPL2	7	4	SPSB4	3438	chr3:140785640:+	ACPL2	18637	chr3:140978965:+	ONLY_REF_SPLICE	YES	56	3	0.16	0.79	0.0909	0.0519	NEIGHBORS[80115],SPSB4->chr3:140770244-140867453:+,splA/ryanodine_receptor_domain_and_SOCS_box_containing_4,ACPL2->chr3:140947568-141013748:+	CORL311_LUNG	0.16	0.79	0.1428	FALSE	0	11	0	4	0	FALSE	ACH-000187
CORL311_LUNG	KYNU--COL6A3	7	2	KYNU	6921	chr2:143685310:+	COL6A3	26438	chr2:238305490:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0909	0.026	KYNU->chr2:143635067-143799890:+,kynureninase,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	CORL311_LUNG	0.9	1	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	MT-ATP6--MT-CO1	7	1	MT-ATP6	1115	chrM:8641:+	MT-CO1	5319	chrM:6541:+	INCL_NON_REF_SPLICE	YES	12462	33004	0	0	0.0909	0.013	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL311_LUNG	0	0	0.1039	FALSE	183	104	9	328	0	FALSE	ACH-000187
CORL311_LUNG	MT-ATP6--MT-CO1	7	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12878	33658	0	0	0.0909	0.013	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL311_LUNG	0	0	0.1039	FALSE	183	104	9	328	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND4--MT-ND4L	3	16	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	9	1	0.68	0.95	0.039	0.2078	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL311_LUNG	0.68	0.95	0.2468	FALSE	344	826	44	306	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND6--MT-TE	7	0	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0909	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL311_LUNG	1	1	0.0909	FALSE	499	1288	110	792	0	FALSE	ACH-000187
CORL311_LUNG	SOBP--PRDM1	6	3	SOBP	4080	chr6:107827631:+	PRDM1	19411	chr6:106536076:+	ONLY_REF_SPLICE	YES	95	12	0.09	0.43	0.0779	0.039	SOBP->chr6:107811162-107981357:+,sine_oculis_binding_protein_homolog,PRDM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},PR_domain_1,chr6:106534195-106557814:+	CORL311_LUNG	0.09	0.43	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	MT-ND6--MT-TE	6	2	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	6	0	0.57	1	0.0779	0.026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL311_LUNG	0.57	1	0.1039	FALSE	499	1288	110	792	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND6--MT-TE	6	2	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	6	0	0.57	1	0.0779	0.026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL311_LUNG	0.57	1	0.1039	FALSE	499	1288	110	792	0	FALSE	ACH-000187
CORL311_LUNG	AL589743.1--RP11-536C10.17	6	1	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	9	0	0.44	1	0.0779	0.013	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	CORL311_LUNG	0.44	1	0.0909	TRUE	0	33	0	45	33	FALSE	ACH-000187
CORL311_LUNG	AP000525.9--LA16c-60G3.6	6	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	9	0	0.44	1	0.0779	0.013	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	CORL311_LUNG	0.44	1	0.0909	TRUE	0	42	0	133	42	FALSE	ACH-000187
CORL311_LUNG	GNGT1--AC002076.10	6	1	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	10	0	0.41	1	0.0779	0.013	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	CORL311_LUNG	0.41	1	0.0909	FALSE	0	28	0	37	0	FALSE	ACH-000187
CORL311_LUNG	ARHGAP23--PRTFDC1	6	0	ARHGAP23	1131	chr17:36584792:+	PRTFDC1	34350	chr10:25197614:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0779	0	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,PRTFDC1->chr10:25137536-25241533:-,phosphoribosyl_transferase_domain_containing_1	CORL311_LUNG	1	1	0.0779	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	C15orf57--CBX3	4	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	41	63	0.23	0.16	0.0519	0.1039	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CORL311_LUNG	0.16	0.23	0.1558	TRUE	267	562	48	632	0	FALSE	ACH-000187
CORL311_LUNG	MT-CO3--MT-ATP6	3	12	MT-CO3	1220	chrM:9426:+	MT-ATP6	4971	chrM:8713:+	INCL_NON_REF_SPLICE	YES	9	53	0.62	0.22	0.039	0.1558	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CORL311_LUNG	0.22	0.62	0.1948	FALSE	189	492	56	216	0	FALSE	ACH-000187
CORL311_LUNG	MT-CO3--MT-ATP6	5	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	7	2	0.56	0.82	0.0649	0.0519	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CORL311_LUNG	0.56	0.82	0.1168	FALSE	189	492	56	216	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND4--MT-ND4L	6	0	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0779	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL311_LUNG	1	1	0.0779	FALSE	344	826	44	306	0	FALSE	ACH-000187
CORL311_LUNG	LDLRAD3--PRR5L	5	2	LDLRAD3	5673	chr11:36120011:+	PRR5L	17578	chr11:36317840:+	INCL_NON_REF_SPLICE	YES	74	0	0.09	1	0.0649	0.026	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	CORL311_LUNG	0.09	1	0.0909	FALSE	0	52	1	15	0	FALSE	ACH-000187
CORL311_LUNG	MT-CO3--MT-ATP6	4	6	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.53	0.0519	0.0779	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CORL311_LUNG	0.53	1	0.1298	FALSE	189	492	56	216	0	FALSE	ACH-000187
CORL311_LUNG	SETD2--SCAP	3	10	SETD2	1114	chr3:47205344:-	SCAP	40216	chr3:47476627:-	ONLY_REF_SPLICE	YES	24	124	0.35	0.09	0.039	0.1299	SETD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SET_domain_containing_2,chr3:47057919-47205457:-,SCAP->SREBF_chaperone,chr3:47455203-47518616:-	CORL311_LUNG	0.09	0.35	0.1689	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	MT-CO3--MT-ATP6	4	5	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	10	1	0.47	0.0519	0.0649	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CORL311_LUNG	0.47	1	0.1168	FALSE	189	492	56	216	0	FALSE	ACH-000187
CORL311_LUNG	MT-CO3--MT-ATP6	3	9	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	NO	6	63	0.67	0.16	0.039	0.1169	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CORL311_LUNG	0.16	0.67	0.1559	FALSE	189	492	56	216	0	FALSE	ACH-000187
CORL311_LUNG	MT-CO3--MT-ATP6	5	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CORL311_LUNG	1	1	0.0649	FALSE	189	492	56	216	0	FALSE	ACH-000187
CORL311_LUNG	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CORL311_LUNG	1	1	0.0649	TRUE	22	156	2	142	0	FALSE	ACH-000187
CORL311_LUNG	GDAP1--RP11-758M4.1	4	3	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	104	0	0.06	1	0.0519	0.039	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	CORL311_LUNG	0.06	1	0.0909	TRUE	7	28	0	43	0	FALSE	ACH-000187
CORL311_LUNG	RP11-108K3.1--GLDN	3	7	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	1	0.91	0.91	0.039	0.0909	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CORL311_LUNG	0.91	0.91	0.1299	FALSE	0	19	0	46	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND4--MT-ND4L	4	2	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	54	0	0.1	1	0.0519	0.026	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL311_LUNG	0.1	1	0.0779	FALSE	344	826	44	306	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND6--MT-TE	4	2	MT-ND6	1199	chrM:14475:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	7	0	0.46	1	0.0519	0.026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL311_LUNG	0.46	1	0.0779	FALSE	499	1288	110	792	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND6--MT-TE	4	2	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	6	0	0.5	1	0.0519	0.026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL311_LUNG	0.5	1	0.0779	FALSE	499	1288	110	792	0	FALSE	ACH-000187
CORL311_LUNG	NCAM1--ZW10	4	2	NCAM1	1390	chr11:112832386:+	ZW10	44847	chr11:113639689:-	ONLY_REF_SPLICE	YES	489	392	0.01	0.02	0.0519	0.026	NCAM1->chr11:112831997-113149158:+,neural_cell_adhesion_molecule_1,ZW10->chr11:113603909-113644533:-,zw10_kinetochore_protein	CORL311_LUNG	0.01	0.02	0.0779	FALSE	0	0	0	1	0	FALSE	ACH-000187
CORL311_LUNG	PDSS2--RP3-359N14.2	4	2	PDSS2	1575	chr6:107780194:-	RP3-359N14.2	17988	chr6:106077903:-	ONLY_REF_SPLICE	YES	72	0	0.08	1	0.0519	0.026	PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2,RP3-359N14.2->chr6:106060542-106080071:-	CORL311_LUNG	0.08	1	0.0779	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	CA12--VPS13C	4	1	CA12	3866	chr15:63667857:-	VPS13C	68003	chr15:62232993:-	ONLY_REF_SPLICE	YES	1	27	0.83	0.16	0.0519	0.013	CA12->carbonic_anhydrase_12,chr15:63613577-63674360:-,VPS13C->chr15:62144588-62352672:-,vacuolar_protein_sorting_13_homolog_C	CORL311_LUNG	0.16	0.83	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	FGF14-IT1--FGF14	4	1	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0519	0.013	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	CORL311_LUNG	1	1	0.0649	TRUE	71	201	23	28	0	FALSE	ACH-000187
CORL311_LUNG	MT-CO3--MT-ATP6	3	5	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	7	2	0.53	0.8	0.039	0.0649	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CORL311_LUNG	0.53	0.8	0.1039	FALSE	189	492	56	216	0	FALSE	ACH-000187
CORL311_LUNG	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	8	0.62	0.38	0.0519	0.013	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL311_LUNG	0.38	0.62	0.0649	FALSE	16	356	14	466	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND4--MT-ND4L	3	4	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1061	0	0.01	1	0.039	0.0519	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL311_LUNG	0.01	1	0.0909	FALSE	344	827	44	306	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL311_LUNG	1	1	0.0519	FALSE	499	1288	110	792	0	FALSE	ACH-000187
CORL311_LUNG	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0.0519	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL311_LUNG	1	1	0.0909	FALSE	462	80	0	856	0	FALSE	ACH-000187
CORL311_LUNG	PINX1--RP1L1	4	0	PINX1	6234	chr8:10683662:-	RP1L1	17312	chr8:10480730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0519	0	NEIGHBORS[52776],PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	CORL311_LUNG	1	1	0.0519	FALSE	1	8	0	15	0	FALSE	ACH-000187
CORL311_LUNG	GNGT1--AC002076.10	3	3	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	10	0	0.38	1	0.039	0.039	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	CORL311_LUNG	0.38	1	0.078	FALSE	0	10	0	30	0	FALSE	ACH-000187
CORL311_LUNG	MT-ATP6--MT-CO1	3	3	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	1798	29836	0	0	0.039	0.039	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL311_LUNG	0	0	0.078	FALSE	183	104	9	328	0	FALSE	ACH-000187
CORL311_LUNG	MT-CO3--MT-ATP6	3	3	MT-CO3	1181	chrM:9387:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	12	1	0.33	0.86	0.039	0.039	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CORL311_LUNG	0.33	0.86	0.078	FALSE	189	492	56	216	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND4--MT-ND4L	3	2	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	683	0	0.01	1	0.039	0.026	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL311_LUNG	0.01	1	0.065	FALSE	344	827	44	306	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND6--MT-TE	3	2	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.039	0.026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL311_LUNG	0.62	1	0.065	FALSE	499	1288	110	792	0	FALSE	ACH-000187
CORL311_LUNG	PDSS2--QRSL1	1	10	PDSS2	1575	chr6:107780194:-	QRSL1	18303	chr6:107088224:+	ONLY_REF_SPLICE	YES	72	258	0.13	0.04	0.013	0.1299	PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2,QRSL1->chr6:107077453-107116292:+,glutaminyl-tRNA_synthase_(glutamine-hydrolyzing)-like_1	CORL311_LUNG	0.04	0.13	0.1429	TRUE	0	0	0	1	0	FALSE	ACH-000187
CORL311_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	13	0	0.24	1	0.039	0.013	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CORL311_LUNG	0.24	1	0.052	FALSE	189	492	56	216	0	FALSE	ACH-000187
CORL311_LUNG	MT-ND4--MT-ND4L	3	1	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	5	0	0.44	1	0.039	0.013	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL311_LUNG	0.44	1	0.052	FALSE	344	821	44	306	0	FALSE	ACH-000187
CORL311_LUNG	RP11-108K3.1--GLDN	2	5	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	1	0.88	0.88	0.026	0.0649	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CORL311_LUNG	0.88	0.88	0.0909	FALSE	0	30	1	55	0	FALSE	ACH-000187
CORL311_LUNG	MSH4--PPA1	3	0	MSH4	8266	chr1:76288266:+	PPA1	33432	chr10:71969441:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	MSH4->chr1:76262567-76378923:+,mutS_homolog_4,PPA1->chr10:71962586-71993667:-,pyrophosphatase_(inorganic)_1	CORL311_LUNG	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	RP11-108K3.1--GLDN	2	4	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.026	0.0519	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CORL311_LUNG	0.86	0.86	0.0779	FALSE	0	14	0	30	0	FALSE	ACH-000187
CORL311_LUNG	RP11-123O10.4--GRIP1	3	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CORL311_LUNG	1	1	0.039	FALSE	416	2512	207	587	0	FALSE	ACH-000187
CORL311_LUNG	TRAPPC9--KCNK9	3	0	TRAPPC9	55504	chr8:140898123:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	CORL311_LUNG	1	1	0.039	FALSE	7	13	2	16	0	FALSE	ACH-000187
CORL311_LUNG	VTI1A--RP11-57H14.3	3	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	CORL311_LUNG	1	1	0.039	FALSE	272	151	14	158	0	FALSE	ACH-000187
CORL311_LUNG	WTIP--KIAA0355	3	0	WTIP	2673	chr19:34973546:+	KIAA0355	22005	chr19:34790584:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	WTIP->Wilms_tumor_1_interacting_protein,chr19:34971874-34997258:+,KIAA0355->KIAA0355,chr19:34745442-34846491:+	CORL311_LUNG	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PTS--NCAM1	2	3	PTS	8623	chr11:112108229:+	NCAM1	19883	chr11:113073101:+	ONLY_REF_SPLICE	YES	0	598	1	0.01	0.026	0.039	PTS->6-pyruvoyltetrahydropterin_synthase,chr11:112097088-112140678:+,NCAM1->chr11:112831997-113149158:+,neural_cell_adhesion_molecule_1	CORL311_LUNG	0.01	1	0.065	FALSE	0	0	0	1	0	FALSE	ACH-000187
CORL311_LUNG	RP11-120D5.1--MID1	2	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	8	0.43	0.27	0.026	0.013	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL311_LUNG	0.27	0.43	0.039	FALSE	0	48	1	163	0	FALSE	ACH-000187
CORL311_LUNG	CDCA7L--BZW2	2	0	CDCA7L	8194	chr7:21946186:-	BZW2	24244	chr7:16725530:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CDCA7L->cell_division_cycle_associated_7_like,chr7:21940518-21985702:-,BZW2->basic_leucine_zipper_and_W2_domains_2,chr7:16685756-16746148:+	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	CDH4--GNAS	2	0	CDH4	2257	chr20:59829993:+	GNAS	42120	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CDH4->cadherin_4,chr20:59827482-60515673:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	CORL311_LUNG	1	1	0.026	TRUE	0	3	0	3	0	TRUE	ACH-000187
CORL311_LUNG	DIRAS2--NT5DC3	2	0	DIRAS2	1353	chr9:93405034:-	NT5DC3	26050	chr12:104169408:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	DIRAS2->DIRAS_family_GTP_binding_RAS_like_2,chr9:93372114-93405386:-,NT5DC3->5'-nucleotidase_domain_containing_3,chr12:104164231-104234975:-	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	GCDH--APLP2	2	0	GCDH	2153	chr19:13002992:+	APLP2	31806	chr11:130007151:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	GCDH->chr19:13001840-13025021:+,glutaryl-CoA_dehydrogenase,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	KIF11--C9orf3	2	0	KIF11	1167	chr10:94353209:+	C9orf3	62159	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	KIF11->chr10:94353043-94415150:+,kinesin_family_member_11,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	PNPLA7--EIF3B	2	0	PNPLA7	21676	chr9:140374764:-	EIF3B	50320	chr7:2418324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	PNPLA7->chr9:140354404-140444986:-,patatin_like_phospholipase_domain_containing_7,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	QPCTL--CCDC94	2	0	QPCTL	2074	chr19:46196814:+	CCDC94	13119	chr19:4249225:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	QPCTL->chr19:46195741-46207247:+,glutaminyl-peptide_cyclotransferase-like,CCDC94->chr19:4247076-4269087:+,coiled-coil_domain_containing_94	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	QRSL1--ATG5	2	0	QRSL1	1128	chr6:107077580:+	ATG5	23642	chr6:106696119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	QRSL1->chr6:107077453-107116292:+,glutaminyl-tRNA_synthase_(glutamine-hydrolyzing)-like_1,ATG5->autophagy_related_5,chr6:106632351-106773666:-	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	RP11-1407O15.2--KIAA1217	1	4	RP11-1407O15.2	5790	chr17:36375100:-	KIAA1217	32577	chr10:24296154:+	ONLY_REF_SPLICE	YES	217	0	0.02	1	0.013	0.0519	RP11-1407O15.2->chr17:36337717-36421858:-,KIAA1217->KIAA1217,chr10:23983675-24836772:+	CORL311_LUNG	0.02	1	0.0649	TRUE	0	0	0	1	0	FALSE	ACH-000187
CORL311_LUNG	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CORL311_LUNG	1	1	0.026	TRUE	274	363	69	150	0	FALSE	ACH-000187
CORL311_LUNG	RPRD1A--GALNT1	2	0	RPRD1A	1323	chr18:33647217:-	GALNT1	25260	chr18:33234524:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,GALNT1->chr18:33161081-33291798:+,polypeptide_N-acetylgalactosaminyltransferase_1	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	RSRC2--CDK2AP1	2	0	RSRC2	1153	chr12:123011395:-	CDK2AP1	24708	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RSRC2->arginine/serine-rich_coiled-coil_2,chr12:122989190-123011547:-,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	SETX--GTF3C4	2	0	SETX	18821	chr9:135172274:-	GTF3C4	45807	chr9:135562626:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	SETX->chr9:135136743-135230372:-,senataxin,GTF3C4->chr9:135545422-135570342:+,general_transcription_factor_IIIC_subunit_4	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	TBL3--KCTD5	2	0	TBL3	1169	chr16:2022206:+	KCTD5	22879	chr16:2757299:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	TBL3->chr16:2022038-2032934:+,transducin_beta_like_3,KCTD5->chr16:2732476-2759031:+,potassium_channel_tetramerization_domain_containing_5	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	ZCCHC8--SMC4	2	0	ZCCHC8	4220	chr12:122977262:-	SMC4	32882	chr3:160138528:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	ZCCHC8->chr12:122957417-122985518:-,zinc_finger_CCHC-type_containing_8,SMC4->chr3:160117062-160152750:+,structural_maintenance_of_chromosomes_4	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	ZNF562--NMT2	2	0	ZNF562	1086	chr19:9785691:-	NMT2	24346	chr10:15161512:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	ZNF562->chr19:9759330-9785776:-,zinc_finger_protein_562,NMT2->N-myristoyltransferase_2,chr10:15144583-15210692:-	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	ZNF738--HOXA3	2	0	ZNF738	7035	chr19:21558766:+	HOXA3	14707	chr7:27179805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,HOXA3->Oncogene{Bushman},chr7:27145803-27192200:-,homeobox_A3	CORL311_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	CLEC16A--TNFRSF17	1	2	CLEC16A	11984	chr16:11097162:+	TNFRSF17	44637	chr16:12061427:+	ONLY_REF_SPLICE	YES	26	5	0.1	0.38	0.013	0.026	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,TNFRSF17->Oncogene{Bushman},chr16:12058964-12061925:+,tumor_necrosis_factor_receptor_superfamily_member_17	CORL311_LUNG	0.1	0.38	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	LIMCH1--NSUN7	1	2	LIMCH1	7853	chr4:41526495:+	NSUN7	64167	chr4:40800804:+	ONLY_REF_SPLICE	YES	71	2	0.04	0.6	0.013	0.026	LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,NSUN7->NOP2/Sun_RNA_methyltransferase_family_member_7,chr4:40751914-40812002:+	CORL311_LUNG	0.04	0.6	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	SLC29A1--SOBP	1	2	SLC29A1	1278	chr6:44187519:+	SOBP	16657	chr6:107824861:+	ONLY_REF_SPLICE	YES	249	1051	0.01	0	0.013	0.026	SLC29A1->Oncogene{Bushman},chr6:44187242-44201888:+,solute_carrier_family_29_member_1_(Augustine_blood_group),SOBP->chr6:107811162-107981357:+,sine_oculis_binding_protein_homolog	CORL311_LUNG	0	0.01	0.039	FALSE	0	0	0	1	0	FALSE	ACH-000187
CORL311_LUNG	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.013	0.026	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CORL311_LUNG	0.75	1	0.039	TRUE	62	24	1	171	0	FALSE	ACH-000187
CORL311_LUNG	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	NO	58	19	0.03	0.1	0.013	0.013	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	CORL311_LUNG	0.03	0.1	0.026	FALSE	118	557	29	88	0	FALSE	ACH-000187
CORL311_LUNG	GUCY1A2--RP11-89C3.4	1	1	GUCY1A2	5675	chr11:106810186:-	RP11-89C3.4	30490	chr11:110963035:-	ONLY_REF_SPLICE	NO	29	0	0.06	1	0.013	0.013	GUCY1A2->Oncogene{Bushman},chr11:106544738-106889250:-,guanylate_cyclase_1,_soluble,_alpha_2,RP11-89C3.4->chr11:110962656-110968081:-	CORL311_LUNG	0.06	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	IQCA1--COL6A3	1	1	IQCA1	1286	chr2:237415900:-	COL6A3	33359	chr2:238305490:-	ONLY_REF_SPLICE	NO	21	0	0.09	1	0.013	0.013	IQCA1->IQ_motif_containing_with_AAA_domain_1,chr2:237232794-237416185:-,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	CORL311_LUNG	0.09	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	LDLRAD3--PRR5L	1	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	34366	chr11:36422547:+	ONLY_REF_SPLICE	YES	74	0	0.03	1	0.013	0.013	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	CORL311_LUNG	0.03	1	0.026	FALSE	12	71	0	11	0	FALSE	ACH-000187
CORL311_LUNG	RNF168--PAK2	1	1	RNF168	1896	chr3:196229744:-	PAK2	15649	chr3:196509497:+	ONLY_REF_SPLICE	YES	44	9	0.04	0.18	0.013	0.013	RNF168->chr3:196195654-196230639:-,ring_finger_protein_168,PAK2->chr3:196466728-196559518:+,p21_(RAC1)_activated_kinase_2	CORL311_LUNG	0.04	0.18	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	RP11-108K3.1--GLDN	1	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	1	1	0.67	0.67	0.013	0.013	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CORL311_LUNG	0.67	0.67	0.026	FALSE	1	20	0	46	0	FALSE	ACH-000187
CORL311_LUNG	RP11-368L12.1--RP11-96H17.1	1	1	RP11-368L12.1	4754	chr16:63368504:-	RP11-96H17.1	10295	chr16:63153269:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.013	0.013	GTEx_FI:{Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4]},RP11-368L12.1->chr16:63348168-63651950:-,RP11-96H17.1->chr16:63090690-63163558:-	CORL311_LUNG	1	1	0.026	TRUE	1	3	0	2	3	TRUE	ACH-000187
CORL311_LUNG	SLC29A1--RP1-67A8.3	1	1	SLC29A1	1278	chr6:44187519:+	RP1-67A8.3	16758	chr6:107831069:-	ONLY_REF_SPLICE	YES	249	0	0.01	1	0.013	0.013	SLC29A1->Oncogene{Bushman},chr6:44187242-44201888:+,solute_carrier_family_29_member_1_(Augustine_blood_group),RP1-67A8.3->chr6:107831007-107832925:-	CORL311_LUNG	0.01	1	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000187
CORL311_LUNG	SOBP--RP11-325I22.2	1	1	SOBP	4080	chr6:107827631:+	RP11-325I22.2	20112	chr5:1364806:-	ONLY_REF_SPLICE	YES	95	0	0.02	1	0.013	0.013	SOBP->chr6:107811162-107981357:+,sine_oculis_binding_protein_homolog,RP11-325I22.2->chr5:1363697-1380182:-	CORL311_LUNG	0.02	1	0.026	TRUE	0	0	0	1	0	FALSE	ACH-000187
CORL311_LUNG	SPSB4--ACPL2	1	1	SPSB4	3438	chr3:140785640:+	ACPL2	24446	chr3:140997184:+	ONLY_REF_SPLICE	YES	56	38	0.03	0.05	0.013	0.013	NEIGHBORS[80115],SPSB4->chr3:140770244-140867453:+,splA/ryanodine_receptor_domain_and_SOCS_box_containing_4,ACPL2->chr3:140947568-141013748:+	CORL311_LUNG	0.03	0.05	0.026	FALSE	0	10	0	3	0	FALSE	ACH-000187
CORL311_LUNG	STK33--LMO1	1	1	STK33	23055	chr11:8457041:-	LMO1	33289	chr11:8252051:-	ONLY_REF_SPLICE	YES	36	5	0.05	0.29	0.013	0.013	STK33->chr11:8413418-8615836:-,serine/threonine_kinase_33,LMO1->ArcherDX_panel,FoundationOne_panel,LIM_domain_only_1,Oncogene{Bushman},chr11:8245851-8290263:-	CORL311_LUNG	0.05	0.29	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000187
CORL311_LUNG	TAF1--DLG3	1	1	TAF1	17777	chrX:70614095:+	DLG3	58520	chrX:69699000:+	ONLY_REF_SPLICE	NO	85	69	0.02	0.03	0.013	0.013	TAF1->ArcherDX_panel,FoundationOne_panel,TATA-box_binding_protein_associated_factor_1,chrX:70586114-70752224:+,DLG3->chrX:69664711-69725337:+,discs_large_homolog_3	CORL311_LUNG	0.02	0.03	0.026	TRUE	0	0	0	1	0	FALSE	ACH-000187
CORL311_LUNG	TYMS--PCBP1-AS1	1	1	TYMS	4286	chr18:662320:+	PCBP1-AS1	16413	chr2:70312756:-	ONLY_REF_SPLICE	YES	607	63	0	0.03	0.013	0.013	TYMS->chr18:657604-673578:+,thymidylate_synthetase,PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-	CORL311_LUNG	0	0.03	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000187
NCIH1693_LUNG	KPNB1--ZNF595	210	77	KPNB1	11478	chr17:45742524:+	ZNF595	31984	chr4:59323:+	ONLY_REF_SPLICE	YES	449	389	0.39	0.42	2.1722	0.7965	{Klijn_CCL:Lung=1},KPNB1->chr17:45726842-45762871:+,karyopherin_subunit_beta_1,ZNF595->chr4:53179-88099:+,zinc_finger_protein_595	NCIH1693_LUNG	0.39	0.42	2.9687	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	RPS6KB1--RP11-763B22.6	209	28	RPS6KB1	1240	chr17:57970686:+	RP11-763B22.6	24956	chr1:148852402:+	INCL_NON_REF_SPLICE	YES	50	0	0.83	1	2.1618	0.2896	RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,RP11-763B22.6->chr1:148852393-148853717:+	NCIH1693_LUNG	0.83	1	2.4514	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	RP11-435B5.4--DAB1	133	60	RP11-435B5.4	2843	chr1:143465380:-	DAB1	32542	chr1:57756838:-	ONLY_REF_SPLICE	YES	63	0	0.75	1	1.3757	0.6206	RP11-435B5.4->chr1:143354963-143467632:-,DAB1->DAB1,_reelin_adaptor_protein,chr1:57460451-59012406:-	NCIH1693_LUNG	0.75	1	1.9963	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	AP003900.6--RP11-435B5.4	107	4	AP003900.6	1122	chr21:11169841:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	10	3	0.92	0.97	1.1068	0.0414	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	NCIH1693_LUNG	0.92	0.97	1.1482	TRUE	1	3	0	6	3	TRUE	ACH-000021
NCIH1693_LUNG	TIMM23B--LINC00843	92	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9516	0.2483	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1693_LUNG	0.99	1	1.1999	TRUE	508	994	45	981	0	FALSE	ACH-000021
NCIH1693_LUNG	RP11-96H19.1--RP11-446N19.1	67	61	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	8	0	0.94	1	0.693	0.631	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1693_LUNG	0.94	1	1.324	FALSE	407	2205	196	549	0	FALSE	ACH-000021
NCIH1693_LUNG	RP11-96H19.1--RP11-446N19.1	71	34	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	8	7	0.93	0.94	0.7344	0.3517	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1693_LUNG	0.93	0.94	1.0861	FALSE	515	4851	409	746	0	FALSE	ACH-000021
NCIH1693_LUNG	MT-TA--MT-TC	60	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6206	0.0207	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1693_LUNG	1	1	0.6413	FALSE	462	80	0	856	0	FALSE	ACH-000021
NCIH1693_LUNG	TIMM23--RP11-464F9.1	51	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	152	3	0.26	0.95	0.5275	0.0207	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1693_LUNG	0.26	0.95	0.5482	TRUE	519	3926	326	965	0	FALSE	ACH-000021
NCIH1693_LUNG	TIMM17A--IPO9	39	11	TIMM17A	2162	chr1:201926508:+	IPO9	24653	chr1:201832576:+	ONLY_REF_SPLICE	YES	397	53	0.11	0.49	0.4034	0.1138	LOCAL_REARRANGEMENT:+:[71197],TIMM17A->chr1:201924619-201939789:+,translocase_of_inner_mitochondrial_membrane_17_homolog_A_(yeast),IPO9->chr1:201798269-201853422:+,importin_9	NCIH1693_LUNG	0.11	0.49	0.5172	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	AGAP3--TTC26	38	12	AGAP3	14789	chr7:150820973:+	TTC26	39411	chr7:138849878:+	ONLY_REF_SPLICE	YES	6	13	0.89	0.79	0.3931	0.1241	AGAP3->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_3,chr7:150782918-150841523:+,TTC26->chr7:138818490-138876732:+,tetratricopeptide_repeat_domain_26	NCIH1693_LUNG	0.79	0.89	0.5172	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	PAWR--LINC00504	38	10	PAWR	9188	chr12:80007355:-	LINC00504	28840	chr4:14861240:-	ONLY_REF_SPLICE	YES	96	0	0.33	1	0.3931	0.1034	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,LINC00504->chr4:14472089-14889793:-,long_intergenic_non-protein_coding_RNA_504	NCIH1693_LUNG	0.33	1	0.4965	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	WIPF2--FMNL1	37	8	WIPF2	1189	chr17:38375744:+	FMNL1	21700	chr17:43307971:+	ONLY_REF_SPLICE	YES	5	5	0.9	0.9	0.3827	0.0828	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,FMNL1->chr17:43298811-43324687:+,formin_like_1	NCIH1693_LUNG	0.9	0.9	0.4655	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	CPEB2--CC2D2A	33	23	CPEB2	5876	chr4:15018902:+	CC2D2A	46759	chr4:15554781:+	ONLY_REF_SPLICE	YES	8	2	0.88	0.97	0.3413	0.2379	{Klijn_CCL:Lung=1},CPEB2->chr4:15004298-15071777:+,cytoplasmic_polyadenylation_element_binding_protein_2,CC2D2A->chr4:15471489-15603180:+,coiled-coil_and_C2_domain_containing_2A	NCIH1693_LUNG	0.88	0.97	0.5792	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	RP11-123O10.4--GRIP1	35	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.362	0.0621	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1693_LUNG	1	1	0.4241	FALSE	416	2512	207	587	0	FALSE	ACH-000021
NCIH1693_LUNG	MT-ND6--MT-TE	35	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.362	0.031	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1693_LUNG	0.97	1	0.393	FALSE	499	1288	110	792	0	FALSE	ACH-000021
NCIH1693_LUNG	RP11-96H19.1--RP11-446N19.1	10	66	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.94	1	0.1034	0.6827	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1693_LUNG	0.94	1	0.7861	FALSE	192	492	57	212	0	FALSE	ACH-000021
NCIH1693_LUNG	RP11-435B5.4--DAB1	10	64	RP11-435B5.4	4638	chr1:143462284:-	DAB1	32542	chr1:57756838:-	ONLY_REF_SPLICE	YES	40	0	0.65	1	0.1034	0.662	RP11-435B5.4->chr1:143354963-143467632:-,DAB1->DAB1,_reelin_adaptor_protein,chr1:57460451-59012406:-	NCIH1693_LUNG	0.65	1	0.7654	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	GTF2I--GTF2IRD1	24	0	GTF2I	1401	chr7:74072394:+	GTF2IRD1	55548	chr7:73944064:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2483	0	PROTCLUST,LOCAL_REARRANGEMENT:+:[55063],GTF2I->chr7:74071994-74175026:+,general_transcription_factor_IIi,GTF2IRD1->GTF2I_repeat_domain_containing_1,chr7:73868120-74016931:+	NCIH1693_LUNG	1	1	0.2483	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	MT-TA--MT-TC	23	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2379	0.0207	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1693_LUNG	1	1	0.2586	FALSE	462	80	0	856	0	FALSE	ACH-000021
NCIH1693_LUNG	RP11-96H19.1--RP11-446N19.1	14	37	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	7	0.91	0.88	0.1448	0.3827	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1693_LUNG	0.88	0.91	0.5275	FALSE	467	2173	244	435	0	FALSE	ACH-000021
NCIH1693_LUNG	RP11-96H19.1--RP11-446N19.1	6	62	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	8	0	0.89	1	0.0621	0.6413	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1693_LUNG	0.89	1	0.7034	FALSE	275	511	55	178	0	FALSE	ACH-000021
NCIH1693_LUNG	MT-ND6--MT-TE	15	21	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.1552	0.2172	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1693_LUNG	0.95	1	0.3724	FALSE	499	1288	110	792	0	FALSE	ACH-000021
NCIH1693_LUNG	MT-ND6--MT-TE	19	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1965	0.0517	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1693_LUNG	0.96	1	0.2482	FALSE	499	1288	110	792	0	FALSE	ACH-000021
NCIH1693_LUNG	HSP90AB1--MT-RNR2	18	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1862	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1693_LUNG	1	1	0.1862	FALSE	13	9	0	364	0	FALSE	ACH-000021
NCIH1693_LUNG	NRIP1--AF127936.7	16	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.86	1	0.1655	0.0207	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1693_LUNG	0.86	1	0.1862	FALSE	292	1546	117	613	0	FALSE	ACH-000021
NCIH1693_LUNG	HSP90AB1--MT-RNR2	15	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1552	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1693_LUNG	1	1	0.1552	FALSE	13	9	0	364	0	FALSE	ACH-000021
NCIH1693_LUNG	AGAP3--ZC3HAV1	13	3	AGAP3	2242	chr7:150784159:+	ZC3HAV1	32010	chr7:138774505:-	ONLY_REF_SPLICE	YES	14	15	0.53	0.52	0.1345	0.031	AGAP3->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_3,chr7:150782918-150841523:+,ZC3HAV1->chr7:138728266-138794465:-,zinc_finger_CCCH-type_containing,_antiviral_1	NCIH1693_LUNG	0.52	0.53	0.1655	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	CTD-2008L17.1--RP11-456O19.2	11	5	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	1	0.94	0.94	0.1138	0.0517	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1693_LUNG	0.94	0.94	0.1655	FALSE	33	240	4	98	0	FALSE	ACH-000021
NCIH1693_LUNG	ITFG1--RP11-417J8.1	11	5	ITFG1	24389	chr16:47271876:-	RP11-417J8.1	33894	chr1:142553293:+	ONLY_REF_SPLICE	YES	37	0	0.3	1	0.1138	0.0517	ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1,RP11-417J8.1->chr1:142553293-142559170:+	NCIH1693_LUNG	0.3	1	0.1655	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	MT-ND6--MT-TE	4	31	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0414	0.3207	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1693_LUNG	0.95	1	0.3621	FALSE	499	1288	110	792	0	FALSE	ACH-000021
NCIH1693_LUNG	QKI--PACRG	10	5	QKI	7175	chr6:163876453:+	PACRG	44484	chr6:163735859:+	ONLY_REF_SPLICE	YES	107	1	0.12	0.94	0.1034	0.0517	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	NCIH1693_LUNG	0.12	0.94	0.1551	TRUE	0	0	0	3	0	TRUE	ACH-000021
NCIH1693_LUNG	MT-ATP6--MT-RNR2	10	3	MT-ATP6	1516	chrM:9042:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	YES	3434	19555	0	0	0.1034	0.031	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1693_LUNG	0	0	0.1344	FALSE	63	17	1	58	0	FALSE	ACH-000021
NCIH1693_LUNG	AC002066.1--AC073130.1	10	1	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	21	0	0.34	1	0.1034	0.0103	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	NCIH1693_LUNG	0.34	1	0.1137	FALSE	0	3	0	33	0	FALSE	ACH-000021
NCIH1693_LUNG	MT-ATP6--MT-RNR2	10	0	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1034	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1693_LUNG	1	1	0.1034	FALSE	63	17	1	58	0	FALSE	ACH-000021
NCIH1693_LUNG	MT-ND6--MT-TE	4	21	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.0414	0.2172	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1693_LUNG	0.89	1	0.2586	FALSE	499	1288	110	792	0	FALSE	ACH-000021
NCIH1693_LUNG	MT-ATP6--MT-RNR2	9	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0931	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1693_LUNG	1	1	0.0931	FALSE	63	17	1	58	0	FALSE	ACH-000021
NCIH1693_LUNG	SCFD2--RP11-340A13.2	8	2	SCFD2	4269	chr4:54179803:-	RP11-340A13.2	18389	chr4:59912141:+	ONLY_REF_SPLICE	YES	19	0	0.34	1	0.0828	0.0207	SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,RP11-340A13.2->chr4:59850000-59912677:+	NCIH1693_LUNG	0.34	1	0.1035	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	MT-ND6--MT-TE	3	20	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.031	0.2069	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1693_LUNG	0.96	1	0.2379	FALSE	499	1288	110	792	0	FALSE	ACH-000021
NCIH1693_LUNG	QKI--PACRG	6	6	QKI	7175	chr6:163876453:+	PACRG	43367	chr6:163733811:+	ONLY_REF_SPLICE	YES	107	0	0.1	1	0.0621	0.0621	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	NCIH1693_LUNG	0.1	1	0.1242	TRUE	0	1	0	1	1	TRUE	ACH-000021
NCIH1693_LUNG	RP11-634B7.4--TRIM58	6	6	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	3	37	0.8	0.24	0.0621	0.0621	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	NCIH1693_LUNG	0.24	0.8	0.1242	TRUE	158	633	76	73	0	FALSE	ACH-000021
NCIH1693_LUNG	AP003900.6--RP11-435B5.4	5	8	AP003900.6	3299	chr21:11174002:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	15	3	0.46	0.81	0.0517	0.0828	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	NCIH1693_LUNG	0.46	0.81	0.1345	TRUE	0	1	0	4	1	TRUE	ACH-000021
NCIH1693_LUNG	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0724	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1693_LUNG	1	1	0.0724	FALSE	462	80	0	856	0	FALSE	ACH-000021
NCIH1693_LUNG	RP11-120D5.1--MID1	7	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0724	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1693_LUNG	1	1	0.0724	FALSE	16	356	14	466	0	FALSE	ACH-000021
NCIH1693_LUNG	ABAT--MSI2	5	3	ABAT	8350	chr16:8829666:+	MSI2	56247	chr17:55607037:+	ONLY_REF_SPLICE	YES	9	25	0.47	0.24	0.0517	0.031	ABAT->4-aminobutyrate_aminotransferase,chr16:8768422-8878432:+,MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2	NCIH1693_LUNG	0.24	0.47	0.0827	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	TBC1D32--RP11-735G4.1	5	1	TBC1D32	27616	chr6:121484116:-	RP11-735G4.1	48502	chr6:125691847:-	ONLY_REF_SPLICE	YES	12	0	0.33	1	0.0517	0.0103	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,RP11-735G4.1->chr6:125691357-125695470:-	NCIH1693_LUNG	0.33	1	0.062	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1693_LUNG	1	1	0.0517	FALSE	63	17	1	58	0	FALSE	ACH-000021
NCIH1693_LUNG	PLD5--KIF26B	5	0	PLD5	5051	chr1:242451664:-	KIF26B	28484	chr1:245530136:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	PLD5->chr1:242246288-242687998:-,phospholipase_D_family_member_5,KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B	NCIH1693_LUNG	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	PRR16--CTD-2334D19.1	5	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH1693_LUNG	1	1	0.0517	FALSE	56	216	12	147	0	FALSE	ACH-000021
NCIH1693_LUNG	TRIM37--TMEM186	4	4	TRIM37	2583	chr17:57181654:-	TMEM186	39614	chr16:8874618:-	ONLY_REF_SPLICE	YES	106	6	0.07	0.57	0.0414	0.0414	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,TMEM186->chr16:8874241-8891505:-,transmembrane_protein_186	NCIH1693_LUNG	0.07	0.57	0.0828	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	MT-TA--MT-TC	4	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0.0207	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1693_LUNG	1	1	0.0621	FALSE	462	80	0	856	0	FALSE	ACH-000021
NCIH1693_LUNG	TRIM37--TMEM186	3	6	TRIM37	2583	chr17:57181654:-	TMEM186	38931	chr16:8875301:-	ONLY_REF_SPLICE	YES	106	0	0.08	1	0.031	0.0621	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,TMEM186->chr16:8874241-8891505:-,transmembrane_protein_186	NCIH1693_LUNG	0.08	1	0.0931	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	EXOC1--KIAA1211	4	1	EXOC1	11814	chr4:56750094:+	KIAA1211	27656	chr4:57045450:+	ONLY_REF_SPLICE	YES	53	0	0.09	1	0.0414	0.0103	EXOC1->chr4:56719782-56771200:+,exocyst_complex_component_1,KIAA1211->KIAA1211,chr4:57036361-57194791:+	NCIH1693_LUNG	0.09	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	TRIM37--TMEM186	3	5	TRIM37	2583	chr17:57181654:-	TMEM186	38990	chr16:8875242:-	INCL_NON_REF_SPLICE	YES	106	3	0.07	0.73	0.031	0.0517	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,TMEM186->chr16:8874241-8891505:-,transmembrane_protein_186	NCIH1693_LUNG	0.07	0.73	0.0827	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	ANP32B--SEPT7	4	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	NCIH1693_LUNG	1	1	0.0414	TRUE	1	1	0	18	1	TRUE	ACH-000021
NCIH1693_LUNG	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1158	chrM:8684:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1693_LUNG	1	1	0.0414	FALSE	63	17	1	58	0	FALSE	ACH-000021
NCIH1693_LUNG	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1693_LUNG	1	1	0.0414	FALSE	63	17	1	58	0	FALSE	ACH-000021
NCIH1693_LUNG	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1110	chrM:8636:+	MT-RNR2	5247	chrM:2236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1693_LUNG	1	1	0.0414	FALSE	63	17	1	58	0	FALSE	ACH-000021
NCIH1693_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1693_LUNG	1	1	0.0414	FALSE	499	1288	110	792	0	FALSE	ACH-000021
NCIH1693_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1693_LUNG	1	1	0.0414	FALSE	499	1288	110	792	0	FALSE	ACH-000021
NCIH1693_LUNG	CCDC7--INADL	3	3	CCDC7	9652	chr10:32762951:+	INADL	57151	chr1:62380259:+	ONLY_REF_SPLICE	YES	10	21	0.38	0.22	0.031	0.031	CCDC7->chr10:32735068-32863492:+,coiled-coil_domain_containing_7,INADL->Oncogene{Bushman},chr1:62208149-62629592:+	NCIH1693_LUNG	0.22	0.38	0.062	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1456	chrM:8982:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	YES	5359	19555	0	0	0.031	0.0207	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1693_LUNG	0	0	0.0517	FALSE	63	17	1	58	0	FALSE	ACH-000021
NCIH1693_LUNG	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1295	chrM:8821:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	9343	19929	0	0	0.031	0.0207	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1693_LUNG	0	0	0.0517	FALSE	63	17	1	58	0	FALSE	ACH-000021
NCIH1693_LUNG	MT-TA--MT-TC	3	2	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0.0207	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1693_LUNG	1	1	0.0517	FALSE	462	80	0	856	0	FALSE	ACH-000021
NCIH1693_LUNG	MT-TA--MT-TC	3	2	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0.0207	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1693_LUNG	1	1	0.0517	FALSE	462	80	0	856	0	FALSE	ACH-000021
NCIH1693_LUNG	NRIP1--AF127936.7	2	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.29	1	0.0207	0.0621	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1693_LUNG	0.29	1	0.0828	FALSE	164	806	69	479	0	FALSE	ACH-000021
NCIH1693_LUNG	RP11-123O10.4--GRIP1	2	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0.0621	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1693_LUNG	1	1	0.0828	FALSE	9	21	5	22	0	FALSE	ACH-000021
NCIH1693_LUNG	BCRP2--IKZF3	3	1	BCRP2	1211	chr22:21457515:+	IKZF3	12538	chr17:37988404:-	ONLY_REF_SPLICE	YES	15	0	0.21	1	0.031	0.0103	BCRP2->Oncogene{Bushman},breakpoint_cluster_region_pseudogene_2,chr22:21457305-21476574:+,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	NCIH1693_LUNG	0.21	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1172	chrM:8698:+	MT-RNR2	5313	chrM:2302:+	INCL_NON_REF_SPLICE	YES	7387	21325	0	0	0.031	0.0103	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1693_LUNG	0	0	0.0413	FALSE	63	17	1	58	0	FALSE	ACH-000021
NCIH1693_LUNG	THRA--ZPBP2	3	1	THRA	6927	chr17:38230794:+	ZPBP2	23019	chr17:38026947:+	ONLY_REF_SPLICE	YES	14	0	0.22	1	0.031	0.0103	THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha,ZPBP2->chr17:38024417-38034149:+,zona_pellucida_binding_protein_2	NCIH1693_LUNG	0.22	1	0.0413	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	G3BP1--CTD-2410N18.5	3	0	G3BP1	1992	chr5:151151597:+	CTD-2410N18.5	27988	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTD-2410N18.5->chr5:133502861-133561762:-	NCIH1693_LUNG	1	1	0.031	TRUE	0	0	0	4	0	TRUE	ACH-000021
NCIH1693_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1078	chrM:8604:+	MT-RNR2	5293	chrM:2282:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1693_LUNG	1	1	0.031	FALSE	63	17	1	58	0	FALSE	ACH-000021
NCIH1693_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1143	chrM:8669:+	MT-RNR2	5305	chrM:2294:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1693_LUNG	1	1	0.031	FALSE	63	17	1	58	0	FALSE	ACH-000021
NCIH1693_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1123	chrM:8649:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1693_LUNG	1	1	0.031	FALSE	63	17	1	58	0	FALSE	ACH-000021
NCIH1693_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1693_LUNG	1	1	0.031	FALSE	499	1288	110	792	0	FALSE	ACH-000021
NCIH1693_LUNG	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1693_LUNG	1	1	0.031	FALSE	25	145	6	90	0	FALSE	ACH-000021
NCIH1693_LUNG	PLD5--KIF26B	3	0	PLD5	3875	chr1:242511408:-	KIF26B	28484	chr1:245530136:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	PLD5->chr1:242246288-242687998:-,phospholipase_D_family_member_5,KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B	NCIH1693_LUNG	1	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	WIPF2--FMNL1	1	8	WIPF2	1189	chr17:38375744:+	FMNL1	20354	chr17:43299275:+	ONLY_REF_SPLICE	YES	5	0	0.64	1	0.0103	0.0828	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,FMNL1->chr17:43298811-43324687:+,formin_like_1	NCIH1693_LUNG	0.64	1	0.0931	TRUE	0	0	0	2	0	TRUE	ACH-000021
NCIH1693_LUNG	CCDC7--INADL	2	3	CCDC7	9652	chr10:32762951:+	INADL	56040	chr1:62374044:+	ONLY_REF_SPLICE	YES	10	16	0.33	0.24	0.0207	0.031	CCDC7->chr10:32735068-32863492:+,coiled-coil_domain_containing_7,INADL->Oncogene{Bushman},chr1:62208149-62629592:+	NCIH1693_LUNG	0.24	0.33	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	AC002066.1--AC073130.1	2	1	AC002066.1	1112	chr7:116139408:-	AC073130.1	12073	chr7:115926249:-	ONLY_REF_SPLICE	YES	21	0	0.12	1	0.0207	0.0103	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	NCIH1693_LUNG	0.12	1	0.031	FALSE	0	0	0	2	0	FALSE	ACH-000021
NCIH1693_LUNG	ADAM9--GNAS	2	1	ADAM9	1292	chr8:38854679:+	GNAS	46674	chr20:57470667:+	ONLY_REF_SPLICE	YES	595	460	0.01	0.01	0.0207	0.0103	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1693_LUNG	0.01	0.01	0.031	FALSE	0	0	0	1	0	FALSE	ACH-000021
NCIH1693_LUNG	AP001347.6--ANKRD20A11P	2	1	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	18278	chr21:15330506:-	ONLY_REF_SPLICE	YES	16	3	0.16	0.5	0.0207	0.0103	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	NCIH1693_LUNG	0.16	0.5	0.031	TRUE	0	0	0	3	0	TRUE	ACH-000021
NCIH1693_LUNG	CCDC7--INADL	2	1	CCDC7	4999	chr10:32745262:+	INADL	56040	chr1:62374044:+	ONLY_REF_SPLICE	YES	38	16	0.07	0.16	0.0207	0.0103	CCDC7->chr10:32735068-32863492:+,coiled-coil_domain_containing_7,INADL->Oncogene{Bushman},chr1:62208149-62629592:+	NCIH1693_LUNG	0.07	0.16	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0.0103	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1693_LUNG	1	1	0.031	TRUE	62	24	1	171	0	FALSE	ACH-000021
NCIH1693_LUNG	CHD2--SRSF1	2	0	CHD2	6529	chr15:93444529:+	SRSF1	62155	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	NCIH1693_LUNG	1	1	0.0207	TRUE	1	2	0	9	0	TRUE	ACH-000021
NCIH1693_LUNG	MGMT--GLRX3	2	0	MGMT	2250	chr10:131334641:+	GLRX3	16672	chr10:131943475:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	MGMT->O-6-methylguanine-DNA_methyltransferase,chr10:131265448-131566271:+,GLRX3->chr10:131934663-131982785:+,glutaredoxin_3	NCIH1693_LUNG	1	1	0.0207	TRUE	1	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	NEK6--PSMB7	2	0	NEK6	1480	chr9:127020364:+	PSMB7	29279	chr9:127146935:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=9;pct=0.10%;dist=Liver=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Brain_-_Hypothalamus=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1},LOCAL_INVERSION:+:-:[159],NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7	NCIH1693_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1693_LUNG	1	1	0.0207	FALSE	7	44	2	41	0	FALSE	ACH-000021
NCIH1693_LUNG	RP11-435B5.4--HSD17B12	2	0	RP11-435B5.4	2843	chr1:143465380:-	HSD17B12	35421	chr11:43819870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	RP11-435B5.4->chr1:143354963-143467632:-,HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12	NCIH1693_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	SLC25A20--KIF2C	2	0	SLC25A20	1304	chr3:48936123:-	KIF2C	19241	chr1:45218804:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	SLC25A20->chr3:48894369-48936426:-,solute_carrier_family_25_member_20,KIF2C->chr1:45205490-45233439:+,kinesin_family_member_2C	NCIH1693_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1693_LUNG	1	1	0.0207	TRUE	5	8	0	33	0	FALSE	ACH-000021
NCIH1693_LUNG	CCDC7--INADL	1	3	CCDC7	10724	chr10:32770710:+	INADL	56040	chr1:62374044:+	ONLY_REF_SPLICE	YES	8	16	0.33	0.2	0.0103	0.031	CCDC7->chr10:32735068-32863492:+,coiled-coil_domain_containing_7,INADL->Oncogene{Bushman},chr1:62208149-62629592:+	NCIH1693_LUNG	0.2	0.33	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	CCDC7--INADL	1	3	CCDC7	10724	chr10:32770710:+	INADL	57151	chr1:62380259:+	ONLY_REF_SPLICE	YES	8	21	0.33	0.16	0.0103	0.031	CCDC7->chr10:32735068-32863492:+,coiled-coil_domain_containing_7,INADL->Oncogene{Bushman},chr1:62208149-62629592:+	NCIH1693_LUNG	0.16	0.33	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	YWHAE--CRK	1	3	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	1462	83	0	0.05	0.0103	0.031	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NCIH1693_LUNG	0	0.05	0.0413	FALSE	6	50	7	115	0	FALSE	ACH-000021
NCIH1693_LUNG	AC002066.1--AC073130.1	1	2	AC002066.1	2203	chr7:116122867:-	AC073130.1	12073	chr7:115926249:-	ONLY_REF_SPLICE	YES	21	0	0.12	1	0.0103	0.0207	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	NCIH1693_LUNG	0.12	1	0.031	FALSE	0	0	0	2	0	FALSE	ACH-000021
NCIH1693_LUNG	CCDC7--INADL	1	2	CCDC7	9652	chr10:32762951:+	INADL	58231	chr1:62393402:+	ONLY_REF_SPLICE	YES	10	14	0.23	0.18	0.0103	0.0207	CCDC7->chr10:32735068-32863492:+,coiled-coil_domain_containing_7,INADL->Oncogene{Bushman},chr1:62208149-62629592:+	NCIH1693_LUNG	0.18	0.23	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	SCFD2--RP11-340A13.2	1	2	SCFD2	4269	chr4:54179803:-	RP11-340A13.2	17284	chr4:59906305:+	ONLY_REF_SPLICE	YES	19	0	0.14	1	0.0103	0.0207	SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,RP11-340A13.2->chr4:59850000-59912677:+	NCIH1693_LUNG	0.14	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000021
NCIH1693_LUNG	AC002066.1--AC073130.1	1	1	AC002066.1	1112	chr7:116139408:-	AC073130.1	13157	chr7:115924460:-	ONLY_REF_SPLICE	YES	21	0	0.09	1	0.0103	0.0103	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	NCIH1693_LUNG	0.09	1	0.0206	FALSE	0	0	0	2	0	FALSE	ACH-000021
NCIH1693_LUNG	AP001347.6--ANKRD20A11P	1	1	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	19348	chr21:15326471:-	ONLY_REF_SPLICE	NO	16	1	0.11	0.67	0.0103	0.0103	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	NCIH1693_LUNG	0.11	0.67	0.0206	TRUE	0	1	0	3	1	TRUE	ACH-000021
NCIH1693_LUNG	AP001347.6--ANKRD20A11P	1	1	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	13921	chr21:15342431:-	ONLY_REF_SPLICE	YES	16	3	0.11	0.4	0.0103	0.0103	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	NCIH1693_LUNG	0.11	0.4	0.0206	TRUE	0	1	0	4	1	TRUE	ACH-000021
NCIH1693_LUNG	CAMK2D--PAPSS1	1	1	CAMK2D	3019	chr4:114680476:-	PAPSS1	37622	chr4:108615162:-	ONLY_REF_SPLICE	YES	46	99	0.04	0.02	0.0103	0.0103	CAMK2D->Oncogene{Bushman},calcium/calmodulin_dependent_protein_kinase_II_delta,chr4:114372188-114683083:-,PAPSS1->3'-phosphoadenosine_5'-phosphosulfate_synthase_1,chr4:108511433-108641608:-	NCIH1693_LUNG	0.02	0.04	0.0206	TRUE	0	0	0	1	0	FALSE	ACH-000021
NCIH1693_LUNG	CASC3--SRP9	1	1	CASC3	9354	chr17:38325699:+	SRP9	15198	chr1:225965637:+	ONLY_REF_SPLICE	NO	221	73	0.01	0.03	0.0103	0.0103	CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	NCIH1693_LUNG	0.01	0.03	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000021
NCIH1693_LUNG	DLEU2--DLEU1	1	1	DLEU2	2589	chr13:50655959:-	DLEU1	17530	chr13:50678840:+	ONLY_REF_SPLICE	YES	156	70	0.01	0.03	0.0103	0.0103	NEIGHBORS_OVERLAP:-:+:[43549],DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding)	NCIH1693_LUNG	0.01	0.03	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000021
NCIH1693_LUNG	DPH6-AS1--RP11-684B21.1	1	1	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0103	0.0103	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	NCIH1693_LUNG	0.67	1	0.0206	TRUE	17	119	17	33	0	FALSE	ACH-000021
NCIH1693_LUNG	NCOR2--UBC	1	1	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	1	36	0.67	0.05	0.0103	0.0103	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH1693_LUNG	0.05	0.67	0.0206	TRUE	145	312	16	51	0	FALSE	ACH-000021
NCIH1693_LUNG	NEK6--PSMB7	1	1	NEK6	10457	chr9:127076264:+	PSMB7	31340	chr9:127119194:-	ONLY_REF_SPLICE	YES	150	681	0.01	0	0.0103	0.0103	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=9;pct=0.10%;dist=Liver=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Brain_-_Hypothalamus=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1},LOCAL_INVERSION:+:-:[159],NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7	NCIH1693_LUNG	0	0.01	0.0206	FALSE	0	0	0	2	0	FALSE	ACH-000021
NCIH1693_LUNG	PRSS23--TMEM135	1	1	PRSS23	2549	chr11:86511693:+	TMEM135	25919	chr11:86782565:+	ONLY_REF_SPLICE	YES	126	26	0.02	0.07	0.0103	0.0103	NEIGHBORS[84934],PRSS23->chr11:86502101-86663952:+,protease,_serine_23,TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135	NCIH1693_LUNG	0.02	0.07	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000021
NCIH1693_LUNG	SRSF10--HIST1H2BG	1	1	SRSF10	8150	chr1:24298063:-	HIST1H2BG	17794	chr6:26216872:-	ONLY_REF_SPLICE	YES	489	0	0	1	0.0103	0.0103	SRSF10->chr1:24291294-24307417:-,serine/arginine-rich_splicing_factor_10,HIST1H2BG->chr6:26216428-26216872:-,histone_cluster_1,_H2bg	NCIH1693_LUNG	0	1	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000021
NCIH1693_LUNG	ZNF573--CLTCL1	1	1	ZNF573	1240	chr19:38307701:-	CLTCL1	47491	chr22:19189004:-	ONLY_REF_SPLICE	YES	5	2	0.29	0.5	0.0103	0.0103	ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573,CLTCL1->Oncogene{Bushman},chr22:19166986-19279239:-,clathrin_heavy_chain_like_1	NCIH1693_LUNG	0.29	0.5	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000021
SNU489_CENTRAL_NERVOUS_SYSTEM	CD63--TGFBI	110	1	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	4192	6442	0.03	0.02	1.1287	0.0103	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	SNU489_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	1.139	TRUE	0	0	0	14	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	79	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8106	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.8106	TRUE	402	216	10	229	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	ULK2--AC084809.3	54	31	ULK2	5783	chr17:19753055:-	AC084809.3	40821	chr17:31233209:+	ONLY_REF_SPLICE	YES	18	1	0.83	0.99	0.5541	0.3181	ULK2->chr17:19674142-19771249:-,unc-51_like_autophagy_activating_kinase_2,AC084809.3->chr17:31232680-31233602:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.83	0.99	0.8722	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	IGSF3--GGT1	51	15	IGSF3	13001	chr1:117131316:-	GGT1	26899	chr22:25003921:+	ONLY_REF_SPLICE	YES	13	4	0.84	0.94	0.5233	0.1539	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	SNU489_CENTRAL_NERVOUS_SYSTEM	0.84	0.94	0.6772	TRUE	1	1	0	8	1	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	49	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5028	0.1847	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.6875	TRUE	508	994	45	981	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	41	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4207	0.0205	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.4412	FALSE	462	80	0	856	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	35	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3591	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.3591	TRUE	519	3926	326	965	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	28	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	16	1	0.65	0.2873	0.0205	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.65	1	0.3078	TRUE	347	1186	183	220	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-353N4.6--RP11-403I13.7	25	8	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.7	14808	chr1:149284655:+	INCL_NON_REF_SPLICE	YES	51	0	0.39	1	0.2565	0.0821	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.39	1	0.3386	TRUE	1	0	0	4	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	FTO--RP11-166B2.1	19	0	FTO	1267	chr16:53738141:+	RP11-166B2.1	33744	chr16:12050094:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.195	0	FTO->chr16:53737875-54155853:+,fat_mass_and_obesity_associated,RP11-166B2.1->chr16:12021230-12070500:-	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.195	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	15	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.1539	0.1026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU489_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.2565	FALSE	499	1288	110	792	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	ULK2--AC084809.3	9	32	ULK2	5783	chr17:19753055:-	AC084809.3	40293	chr17:31232681:+	INCL_NON_REF_SPLICE	YES	18	0	0.69	1	0.0923	0.3283	ULK2->chr17:19674142-19771249:-,unc-51_like_autophagy_activating_kinase_2,AC084809.3->chr17:31232680-31233602:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.69	1	0.4206	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MAF--RP11-679B19.2	15	7	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1539	0.0718	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.2257	TRUE	48	25	3	38	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	16	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1642	0.0103	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.1745	FALSE	499	1288	110	792	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	16	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1642	0.0103	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.1745	FALSE	499	1288	110	792	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	13	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.95	0.95	0.1334	0.0513	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.95	0.95	0.1847	FALSE	515	4851	409	746	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	9	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	43	26	0.31	0.42	0.0923	0.1026	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU489_CENTRAL_NERVOUS_SYSTEM	0.31	0.42	0.1949	TRUE	267	562	48	632	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	11	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1129	0.0103	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.1232	FALSE	292	1546	117	613	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	10	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	10	1	0.58	0.1026	0.041	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.58	1	0.1436	TRUE	465	1949	224	605	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-353N4.6--SEC22B	10	2	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	51	438	0.19	0.03	0.1026	0.0205	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.03	0.19	0.1231	TRUE	49	42	7	43	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	FTO--RP11-166B2.1	10	0	FTO	1267	chr16:53738141:+	RP11-166B2.1	32608	chr16:12057883:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1026	0	FTO->chr16:53737875-54155853:+,fat_mass_and_obesity_associated,RP11-166B2.1->chr16:12021230-12070500:-	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	9	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0923	0.0205	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.1128	FALSE	462	80	0	856	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	8	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0821	0.0513	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.1334	TRUE	458	1351	185	561	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	9	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0923	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0923	TRUE	1	0	0	97	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	7	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.0718	0.0718	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.1436	FALSE	467	2173	244	435	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0718	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0718	FALSE	462	80	0	856	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	6	1	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0616	0.0103	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0719	TRUE	4	2	0	28	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	5	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0513	0.0513	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.1026	FALSE	407	2205	196	549	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	6	0	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0616	TRUE	1	0	0	97	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	6	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0616	FALSE	499	1288	110	792	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	4	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	42	30	0.19	0.25	0.041	0.0616	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU489_CENTRAL_NERVOUS_SYSTEM	0.19	0.25	0.1026	TRUE	267	562	48	632	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	10	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.81	1	0.0308	0.1026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU489_CENTRAL_NERVOUS_SYSTEM	0.81	1	0.1334	FALSE	499	1288	110	792	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	10	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0.1026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.1334	FALSE	499	1288	110	792	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	5	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0513	0.0103	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SNU489_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.0616	TRUE	254	575	65	124	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-353N4.6--RP11-403I13.7	3	9	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.7	14808	chr1:149284655:+	INCL_NON_REF_SPLICE	YES	55	0	0.18	1	0.0308	0.0923	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.18	1	0.1231	TRUE	1	0	0	4	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	SDF4--MT-ND4L	5	1	SDF4	2252	chr1:1164215:-	MT-ND4L	13838	chrM:10471:+	INCL_NON_REF_SPLICE	YES	876	0	0.01	1	0.0513	0.0103	SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU489_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0616	FALSE	0	0	0	7	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	4	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0.041	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.082	FALSE	462	80	0	856	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	POU2F1--ILDR2	5	0	POU2F1	1130	chr1:167190195:+	ILDR2	44237	chr1:166927338:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0513	0	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,ILDR2->chr1:166882443-166944719:-,immunoglobulin_like_domain_containing_receptor_2	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0513	TRUE	0	0	0	2	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0.0718	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.1026	FALSE	499	1288	110	792	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	3	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.041	0.0308	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU489_CENTRAL_NERVOUS_SYSTEM	0.7	1	0.0718	FALSE	499	1288	110	792	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	4	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	74	0.67	0.07	0.041	0.0205	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU489_CENTRAL_NERVOUS_SYSTEM	0.07	0.67	0.0615	FALSE	16	356	14	466	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	STAT3--KRT35	4	1	STAT3	1290	chr17:40540297:-	KRT35	27473	chr17:39637007:-	INCL_NON_REF_SPLICE	YES	191	2	0.03	0.71	0.041	0.0103	STAT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:40465342-40540586:-,signal_transducer_and_activator_of_transcription_3,KRT35->chr17:39632941-39637392:-,keratin_35	SNU489_CENTRAL_NERVOUS_SYSTEM	0.03	0.71	0.0513	TRUE	0	0	0	1	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	ALDOA--EEF2	4	0	ALDOA	7433	chr16:30077205:+	EEF2	15013	chr19:3985461:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.05%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.041	TRUE	0	0	0	2	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	DNAJC25--UGCG	4	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.041	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.041	TRUE	50	73	10	50	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	3	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0.0308	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0616	FALSE	499	1288	110	792	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	LGALS1--RP5-1042K10.10	3	2	LGALS1	2458	chr22:38073072:+	RP5-1042K10.10	12807	chr22:40768953:-	ONLY_REF_SPLICE	YES	3382	0	0	1	0.0308	0.0205	LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1,RP5-1042K10.10->chr22:40768668-40784294:-	SNU489_CENTRAL_NERVOUS_SYSTEM	0	1	0.0513	FALSE	0	0	0	1	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	3	2	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	4	74	0.56	0.06	0.0308	0.0205	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU489_CENTRAL_NERVOUS_SYSTEM	0.06	0.56	0.0513	FALSE	0	9	0	55	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	3	2	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0.0205	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0513	TRUE	6	15	3	35	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	EFCAB11--RP11-944C7.1	3	1	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	19	0	0.17	1	0.0308	0.0103	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	SNU489_CENTRAL_NERVOUS_SYSTEM	0.17	1	0.0411	TRUE	31	91	1	18	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	PIGT--MT-CO3	3	0	PIGT	1184	chr20:44044900:+	MT-CO3	11739	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	PIGT->chr20:44044717-44054884:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_T,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0308	FALSE	0	0	0	5	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	2	2	CTD-2337A12.1	6369	chr5:95920737:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	16	1	0.2	0.0205	0.0205	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.2	1	0.041	TRUE	2	4	3	1	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MRPS6--AP000318.2	2	2	MRPS6	7514	chr21:35497780:+	AP000318.2	14453	chr21:35635120:+	ONLY_REF_SPLICE	YES	123	0	0.03	1	0.0205	0.0205	NEIGHBORS[62022],MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,AP000318.2->chr21:35577356-35697334:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.041	FALSE	0	3	0	2	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MRPS6--AP000318.2	2	2	MRPS6	1522	chr21:35446045:+	AP000318.2	14453	chr21:35635120:+	ONLY_REF_SPLICE	YES	181	0	0.02	1	0.0205	0.0205	NEIGHBORS[62022],MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,AP000318.2->chr21:35577356-35697334:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.041	FALSE	0	4	0	1	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	7	0	0.36	1	0.0205	0.0205	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU489_CENTRAL_NERVOUS_SYSTEM	0.36	1	0.041	FALSE	125	705	46	456	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-353N4.6--SEC22B	2	2	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	55	438	0.07	0.01	0.0205	0.0205	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.01	0.07	0.041	FALSE	49	42	7	43	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	2	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	51	1	0.06	0.0205	0.0103	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0308	TRUE	15	36	8	26	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-1L12.3--SLC5A12	2	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0205	0.0103	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	SNU489_CENTRAL_NERVOUS_SYSTEM	0.43	1	0.0308	TRUE	3	101	0	60	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0103	0.0513	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.0616	FALSE	275	511	55	178	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	CENPA--HADHA	2	0	CENPA	1138	chr2:26987294:+	HADHA	23561	chr2:26424189:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	CENPA->centromere_protein_A,chr2:26987157-27023935:+,HADHA->chr2:26413504-26467594:-,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_alpha_subunit	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	COL6A1--COL3A1	2	0	COL6A1	9672	chr21:47412312:+	COL3A1	34033	chr2:189859772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	DPH6-AS1--RP11-684B21.1	2	0	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	17	119	17	33	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	IMMP2L--CUX1	2	0	IMMP2L	1667	chr7:111201907:-	CUX1	64915	chr7:101916637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	KIAA0319L--SHARPIN	2	0	KIAA0319L	6988	chr1:35972213:-	SHARPIN	37136	chr8:145158128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,SHARPIN->SHANK_associated_RH_domain_interactor,chr8:145153536-145163027:-	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	POLE4--RP11-355F16.1	2	0	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	5	7	0	37	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RCBTB1--PHF11	2	0	RCBTB1	3926	chr13:50140754:-	PHF11	25576	chr13:50080771:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=2},LOCAL_INVERSION:-:+:[2959],RCBTB1->RCC1_and_BTB_domain_containing_protein_1,chr13:50106082-50159719:-,PHF11->PHD_finger_protein_11,chr13:50069746-50103123:+	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--RP11-781A6.1	2	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	94	160	11	37	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-358H9.1--RP11-400N13.1	2	0	RP11-358H9.1	2827	chr1:222626082:-	RP11-400N13.1	9106	chr1:222262907:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	NEIGHBORS[65306],RP11-358H9.1->chr1:222626082-222628047:-,RP11-400N13.1->chr1:222262511-222560776:-	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	FALSE	0	22	0	9	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	TBCA--AP3B1	2	0	TBCA	2304	chr5:77072029:-	AP3B1	20537	chr5:77477486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	0	1	0	2	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	UBL3--SLC7A1	2	0	UBL3	2173	chr13:30423649:-	SLC7A1	14036	chr13:30127997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0205	TRUE	1	5	0	8	1	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	15	0	0.21	1	0.0103	0.0308	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU489_CENTRAL_NERVOUS_SYSTEM	0.21	1	0.0411	FALSE	164	806	69	479	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	1	2	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	NO	61	192	0.05	0.02	0.0103	0.0205	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SNU489_CENTRAL_NERVOUS_SYSTEM	0.02	0.05	0.0308	FALSE	38	10	2	29	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MRPS6--AP000318.2	1	2	MRPS6	7514	chr21:35497780:+	AP000318.2	13412	chr21:35587801:+	ONLY_REF_SPLICE	YES	123	0	0.02	1	0.0103	0.0205	NEIGHBORS[62022],MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,AP000318.2->chr21:35577356-35697334:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0308	FALSE	0	0	0	2	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MRPS6--AP000318.2	1	2	MRPS6	1522	chr21:35446045:+	AP000318.2	13412	chr21:35587801:+	ONLY_REF_SPLICE	NO	181	0	0.02	1	0.0103	0.0205	NEIGHBORS[62022],MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,AP000318.2->chr21:35577356-35697334:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0308	FALSE	0	0	0	1	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	TSPAN4--IFITM10	1	2	TSPAN4	6469	chr11:850367:+	IFITM10	17601	chr11:1769349:-	ONLY_REF_SPLICE	YES	907	145	0	0.02	0.0103	0.0205	TSPAN4->chr11:842808-867116:+,tetraspanin_4,IFITM10->chr11:1753640-1771821:-,interferon_induced_transmembrane_protein_10	SNU489_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0308	FALSE	0	0	0	1	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	ZNF738--CHMP1A	1	2	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	8	228	0.27	0.01	0.0103	0.0205	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SNU489_CENTRAL_NERVOUS_SYSTEM	0.01	0.27	0.0308	FALSE	1	20	1	28	3	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	FMN1--GREM1	1	1	FMN1	30151	chr15:33149216:-	GREM1	48653	chr15:33022891:+	ONLY_REF_SPLICE	YES	22	121	0.08	0.02	0.0103	0.0103	LOCAL_INVERSION:-:+:[30877],FMN1->chr15:33057747-33486897:-,formin_1,GREM1->chr15:33010175-33026870:+,gremlin_1,_DAN_family_BMP_antagonist	SNU489_CENTRAL_NERVOUS_SYSTEM	0.02	0.08	0.0206	TRUE	0	0	0	1	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	MRPS6--AP000318.2	1	1	MRPS6	7514	chr21:35497780:+	AP000318.2	16648	chr21:35697036:+	ONLY_REF_SPLICE	YES	123	0	0.02	1	0.0103	0.0103	NEIGHBORS[62022],MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,AP000318.2->chr21:35577356-35697334:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	NCOA3--EYA2	1	1	NCOA3	8220	chr20:46256767:+	EYA2	46927	chr20:45808446:+	ONLY_REF_SPLICE	YES	34	1	0.06	0.67	0.0103	0.0103	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.06	0.67	0.0206	TRUE	0	0	0	2	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	PPP1R12C--CNN2	1	1	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	NO	96	458	0.02	0	0.0103	0.0103	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0206	FALSE	35	34	3	30	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-155G15.2--RP11-1E3.1	1	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0103	0.0103	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0206	FALSE	46	201	11	112	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	1	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0103	0.0103	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0206	TRUE	0	7	2	11	5	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	1	1	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	7741	chr5:95644428:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0103	0.0103	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	SNU489_CENTRAL_NERVOUS_SYSTEM	1	1	0.0206	TRUE	0	0	0	4	0	FALSE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	RP11-353N4.6--RP11-403I13.7	1	1	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.7	16052	chr1:149286755:+	ONLY_REF_SPLICE	YES	51	3	0.04	0.4	0.0103	0.0103	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	SNU489_CENTRAL_NERVOUS_SYSTEM	0.04	0.4	0.0206	TRUE	0	0	0	3	0	TRUE	ACH-000543
SNU489_CENTRAL_NERVOUS_SYSTEM	STAT3--KRT35	1	1	STAT3	1290	chr17:40540297:-	KRT35	28447	chr17:39636033:-	ONLY_REF_SPLICE	NO	191	24	0.01	0.08	0.0103	0.0103	STAT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:40465342-40540586:-,signal_transducer_and_activator_of_transcription_3,KRT35->chr17:39632941-39637392:-,keratin_35	SNU489_CENTRAL_NERVOUS_SYSTEM	0.01	0.08	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000543
SNU349_KIDNEY	COL8A1--CMSS1	156	82	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	1722	276	0.12	0.46	1.3965	0.734	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SNU349_KIDNEY	0.12	0.46	2.1305	FALSE	76	19	3	26	0	FALSE	ACH-000907
SNU349_KIDNEY	CTD-2337A12.1--CAST	79	7	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	42	1	0.67	0.7072	0.0627	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU349_KIDNEY	0.67	1	0.7699	TRUE	347	1186	183	220	0	FALSE	ACH-000907
SNU349_KIDNEY	CYR61--ACTB	67	0	CYR61	3134	chr1:86048577:+	ACTB	12895	chr7:5567955:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5998	0	GTEx&tcga_normals:3/3694=0.08%,CYR61->Oncogene{Bushman},chr1:86046444-86049645:+,cysteine_rich_angiogenic_inducer_61,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU349_KIDNEY	1	1	0.5998	TRUE	0	0	0	2	0	TRUE	ACH-000907
SNU349_KIDNEY	MT-ND4--MT-ND4L	21	173	MT-ND4	1942	chrM:11701:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	12893	0	0.01	1	0.188	1.5486	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU349_KIDNEY	0.01	1	1.7366	FALSE	344	827	44	306	0	FALSE	ACH-000907
SNU349_KIDNEY	TIMM23B--LINC00843	56	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5013	0.1522	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU349_KIDNEY	1	1	0.6535	TRUE	508	994	45	981	0	FALSE	ACH-000907
SNU349_KIDNEY	AC073072.5--STEAP1B	59	0	AC073072.5	1053	chr7:22767187:-	STEAP1B	6230	chr7:22672541:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5281	0	NEIGHBORS[92470],AC073072.5->chr7:22765014-22767239:-,STEAP1B->STEAP_family_member_1B,chr7:22459063-22672544:-	SNU349_KIDNEY	1	1	0.5281	FALSE	0	0	0	5	0	FALSE	ACH-000907
SNU349_KIDNEY	COL8A1--CMSS1	41	35	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	1998	276	0.04	0.22	0.367	0.3133	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SNU349_KIDNEY	0.04	0.22	0.6803	FALSE	38	10	2	29	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND4--MT-ND4L	6	167	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	9	0	0.95	1	0.0537	1.4949	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU349_KIDNEY	0.95	1	1.5486	FALSE	344	826	44	306	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND4--MT-ND4L	3	169	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	9	0	0.95	1	0.0269	1.5128	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU349_KIDNEY	0.95	1	1.5397	FALSE	344	827	44	306	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND4--MT-ND4L	11	119	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	4199	0	0.03	1	0.0985	1.0652	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU349_KIDNEY	0.03	1	1.1637	FALSE	344	827	44	306	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND4--MT-ND4L	9	122	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0806	1.0921	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU349_KIDNEY	0.99	1	1.1727	FALSE	344	821	44	306	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-TA--MT-TC	35	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3133	0.0627	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU349_KIDNEY	1	1	0.376	FALSE	462	80	0	856	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND6--MT-TE	33	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2954	0.0358	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU349_KIDNEY	0.97	1	0.3312	FALSE	499	1288	110	792	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND4--MT-ND4L	3	119	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	6	0	0.95	1	0.0269	1.0652	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU349_KIDNEY	0.95	1	1.0921	FALSE	344	826	44	306	0	FALSE	ACH-000907
SNU349_KIDNEY	TIMM23--RP11-464F9.1	31	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	96	1	0.26	0.97	0.2775	0.0179	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU349_KIDNEY	0.26	0.97	0.2954	TRUE	519	3926	326	965	0	FALSE	ACH-000907
SNU349_KIDNEY	COL8A1--CMSS1	9	82	COL8A1	14828	chr3:99513490:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	1481	276	0.06	0.25	0.0806	0.734	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SNU349_KIDNEY	0.06	0.25	0.8146	FALSE	76	19	3	26	0	FALSE	ACH-000907
SNU349_KIDNEY	PRR16--CTD-2334D19.1	23	7	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	17	0	0.64	1	0.2059	0.0627	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SNU349_KIDNEY	0.64	1	0.2686	FALSE	21	45	1	60	0	FALSE	ACH-000907
SNU349_KIDNEY	COL8A1--CMSS1	4	80	COL8A1	14564	chr3:99513226:+	CMSS1	32895	chr3:99865820:+	INCL_NON_REF_SPLICE	YES	1722	274	0.05	0.23	0.0358	0.7161	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SNU349_KIDNEY	0.05	0.23	0.7519	FALSE	76	19	3	26	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND4--MT-ND4L	3	79	MT-ND4	1231	chrM:10990:+	MT-ND4L	5632	chrM:10723:+	INCL_NON_REF_SPLICE	YES	10	0	0.89	1	0.0269	0.7072	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU349_KIDNEY	0.89	1	0.7341	FALSE	344	827	44	306	0	FALSE	ACH-000907
SNU349_KIDNEY	PRR16--CTD-2334D19.1	21	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	39	0	0.4	1	0.188	0.0448	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SNU349_KIDNEY	0.4	1	0.2328	FALSE	56	216	12	147	0	FALSE	ACH-000907
SNU349_KIDNEY	ARPP19--GNB5	20	1	ARPP19	5297	chr15:52849297:-	GNB5	19024	chr15:52442122:-	ONLY_REF_SPLICE	YES	159	31	0.12	0.4	0.179	0.009	ARPP19->cAMP_regulated_phosphoprotein_19kDa,chr15:52839242-52862080:-,GNB5->G_protein_subunit_beta_5,chr15:52413117-52483566:-	SNU349_KIDNEY	0.12	0.4	0.188	TRUE	0	0	0	1	0	TRUE	ACH-000907
SNU349_KIDNEY	MT-ND6--MT-TE	14	18	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	20	0	0.62	1	0.1253	0.1611	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU349_KIDNEY	0.62	1	0.2864	FALSE	499	1288	110	792	0	FALSE	ACH-000907
SNU349_KIDNEY	RP11-96H19.1--RP11-446N19.1	18	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.95	0.91	0.1611	0.0179	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU349_KIDNEY	0.91	0.95	0.179	FALSE	515	4851	409	746	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND4--MT-ND4L	4	56	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	4	0	0.94	1	0.0358	0.5013	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU349_KIDNEY	0.94	1	0.5371	FALSE	344	826	44	306	0	FALSE	ACH-000907
SNU349_KIDNEY	SERPINE1--MT-ND4	17	2	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	7065	12515	0	0	0.1522	0.0179	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SNU349_KIDNEY	0	0	0.1701	FALSE	1	0	0	29	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND6--MT-TE	15	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1343	0.0448	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU349_KIDNEY	0.95	1	0.1791	FALSE	499	1288	110	792	0	FALSE	ACH-000907
SNU349_KIDNEY	HSPBP1--ZSWIM6	16	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1432	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	SNU349_KIDNEY	1	1	0.1432	TRUE	47	32	1	28	0	FALSE	ACH-000907
SNU349_KIDNEY	MAF--RP11-679B19.2	14	5	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1253	0.0448	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	SNU349_KIDNEY	1	1	0.1701	TRUE	48	25	3	38	0	FALSE	ACH-000907
SNU349_KIDNEY	RP11-444D3.1--SOX5	14	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1253	0.0179	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU349_KIDNEY	1	1	0.1432	TRUE	477	1352	189	275	0	FALSE	ACH-000907
SNU349_KIDNEY	RP11-123O10.4--GRIP1	14	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1253	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU349_KIDNEY	1	1	0.1253	FALSE	416	2512	207	587	0	FALSE	ACH-000907
SNU349_KIDNEY	RORA--ANXA2	12	6	RORA	13827	chr15:60884586:-	ANXA2	59082	chr15:60656722:-	ONLY_REF_SPLICE	YES	5	2189	0.78	0.01	0.1074	0.0537	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	SNU349_KIDNEY	0.01	0.78	0.1611	FALSE	2	1	0	8	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND5--IGFBP3	13	1	MT-ND5	1786	chrM:13122:+	IGFBP3	8750	chr7:45956949:-	INCL_NON_REF_SPLICE	YES	2432	9528	0.01	0	0.1164	0.009	MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,IGFBP3->Oncogene{Bushman},chr7:45951949-45961473:-,insulin_like_growth_factor_binding_protein_3	SNU349_KIDNEY	0	0.01	0.1254	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND4--MT-ND4L	7	24	MT-ND4	1152	chrM:10911:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9	0	0.78	1	0.0627	0.2148	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU349_KIDNEY	0.78	1	0.2775	FALSE	344	826	44	306	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND6--MT-TE	6	27	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	19	0	0.63	1	0.0537	0.2417	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU349_KIDNEY	0.63	1	0.2954	FALSE	499	1288	110	792	0	FALSE	ACH-000907
SNU349_KIDNEY	HSP90AB1--MT-RNR2	12	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1459	0	0.01	1	0.1074	0.009	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU349_KIDNEY	0.01	1	0.1164	FALSE	13	9	0	364	0	FALSE	ACH-000907
SNU349_KIDNEY	B4GALT4--IGSF11	12	0	B4GALT4	12789	chr3:118935087:-	IGSF11	30908	chr3:118649122:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1074	0	NEIGHBORS[65664],B4GALT4->beta-1,4-galactosyltransferase_4,chr3:118930579-118959950:-,IGSF11->chr3:118619404-118864915:-,immunoglobulin_superfamily_member_11	SNU349_KIDNEY	1	1	0.1074	FALSE	10	5	0	3	0	FALSE	ACH-000907
SNU349_KIDNEY	FLNA--IGFBP3	8	13	FLNA	17358	chrX:153581308:-	IGFBP3	27801	chr7:45956860:-	INCL_NON_REF_SPLICE	NO	3890	13031	0.01	0	0.0716	0.1164	FLNA->chrX:153576892-153603006:-,filamin_A,IGFBP3->Oncogene{Bushman},chr7:45951949-45961473:-,insulin_like_growth_factor_binding_protein_3	SNU349_KIDNEY	0	0.01	0.188	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND4--MT-ND4L	5	25	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10	0	0.75	1	0.0448	0.2238	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU349_KIDNEY	0.75	1	0.2686	FALSE	344	826	44	306	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND4--MT-ND4L	3	25	MT-ND4	1248	chrM:11007:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	7	0	0.8	1	0.0269	0.2238	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU349_KIDNEY	0.8	1	0.2507	FALSE	344	827	44	306	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND6--MT-TE	5	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0448	0.1522	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU349_KIDNEY	0.96	1	0.197	FALSE	499	1288	110	792	0	FALSE	ACH-000907
SNU349_KIDNEY	IGFBP3--MT-RNR2	8	4	IGFBP3	7604	chr7:45953061:-	MT-RNR2	11735	chrM:1689:+	INCL_NON_REF_SPLICE	YES	16288	0	0	1	0.0716	0.0358	IGFBP3->Oncogene{Bushman},chr7:45951949-45961473:-,insulin_like_growth_factor_binding_protein_3,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU349_KIDNEY	0	1	0.1074	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	SLC6A3--LPCAT1	9	0	SLC6A3	1083	chr5:1445463:-	LPCAT1	24700	chr5:1501718:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0806	0	LOCAL_REARRANGEMENT:-:[11050],SLC6A3->Oncogene{Bushman},chr5:1392909-1445545:-,solute_carrier_family_6_member_3,LPCAT1->chr5:1456595-1524092:-,lysophosphatidylcholine_acyltransferase_1	SNU349_KIDNEY	1	1	0.0806	TRUE	0	3	0	1	0	TRUE	ACH-000907
SNU349_KIDNEY	COL8A1--CMSS1	5	14	COL8A1	12080	chr3:99463865:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	2291	276	0.01	0.06	0.0448	0.1253	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SNU349_KIDNEY	0.01	0.06	0.1701	FALSE	4	4	0	17	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-TA--MT-TC	6	8	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0.0716	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU349_KIDNEY	1	1	0.1253	FALSE	462	80	0	856	0	FALSE	ACH-000907
SNU349_KIDNEY	RP11-96H19.1--RP11-446N19.1	7	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0627	0.0269	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU349_KIDNEY	0.91	1	0.0896	FALSE	407	2205	196	549	0	FALSE	ACH-000907
SNU349_KIDNEY	RP5-1070A16.1--SNX7	7	2	RP5-1070A16.1	2165	chr1:98715102:+	SNX7	11398	chr1:99150441:+	ONLY_REF_SPLICE	YES	3	79	0.75	0.1	0.0627	0.0179	RP5-1070A16.1->chr1:98676303-98738214:+,SNX7->chr1:99127236-99226056:+,sorting_nexin_7	SNU349_KIDNEY	0.1	0.75	0.0806	TRUE	0	2	0	2	2	TRUE	ACH-000907
SNU349_KIDNEY	CCDC80--MT2A	7	1	CCDC80	5854	chr3:112357705:-	MT2A	18099	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	3342	6	0	0.57	0.0627	0.009	GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},CCDC80->chr3:112323407-112368377:-,coiled-coil_domain_containing_80,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SNU349_KIDNEY	0	0.57	0.0717	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	TGFBI--MT-CO1	7	0	TGFBI	6238	chr5:135382590:+	MT-CO1	23354	chrM:6821:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU349_KIDNEY	1	1	0.0627	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	RP11-120D5.1--MID1	6	3	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	1	72	0.9	0.11	0.0537	0.0269	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU349_KIDNEY	0.11	0.9	0.0806	FALSE	0	9	0	55	0	FALSE	ACH-000907
SNU349_KIDNEY	NRIP1--AF127936.7	6	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.57	1	0.0537	0.0179	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU349_KIDNEY	0.57	1	0.0716	FALSE	125	705	46	456	0	FALSE	ACH-000907
SNU349_KIDNEY	FLNA--IGFBP3	3	13	FLNA	18612	chrX:153580054:-	IGFBP3	27793	chr7:45956868:-	INCL_NON_REF_SPLICE	YES	3537	13066	0	0	0.0269	0.1164	FLNA->chrX:153576892-153603006:-,filamin_A,IGFBP3->Oncogene{Bushman},chr7:45951949-45961473:-,insulin_like_growth_factor_binding_protein_3	SNU349_KIDNEY	0	0	0.1433	TRUE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	IGFBP3--MT-RNR2	5	5	IGFBP3	7613	chr7:45953052:-	MT-RNR2	11744	chrM:1698:+	INCL_NON_REF_SPLICE	YES	16175	0	0	1	0.0448	0.0448	IGFBP3->Oncogene{Bushman},chr7:45951949-45961473:-,insulin_like_growth_factor_binding_protein_3,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU349_KIDNEY	0	1	0.0896	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	RP11-155G15.2--RP11-1E3.1	6	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0537	0.009	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	SNU349_KIDNEY	1	1	0.0627	FALSE	46	201	11	112	0	FALSE	ACH-000907
SNU349_KIDNEY	VIM--MT-CO3	6	0	VIM	2142	chr10:17271399:+	MT-CO3	12246	chrM:9248:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0	VIM->chr10:17270258-17279592:+,vimentin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU349_KIDNEY	1	1	0.0537	FALSE	0	0	0	2	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND6--MT-TE	4	7	MT-ND6	1149	chrM:14525:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	10	0	0.52	1	0.0358	0.0627	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU349_KIDNEY	0.52	1	0.0985	FALSE	499	1288	110	792	0	FALSE	ACH-000907
SNU349_KIDNEY	RP11-120D5.1--MID1	5	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	72	0.8	0.1	0.0448	0.0269	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU349_KIDNEY	0.1	0.8	0.0717	FALSE	16	356	14	466	0	FALSE	ACH-000907
SNU349_KIDNEY	SLC16A12--LIPA	5	2	SLC16A12	5062	chr10:91222136:-	LIPA	22973	chr10:91074416:-	ONLY_REF_SPLICE	YES	12	11	0.37	0.39	0.0448	0.0179	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SNU349_KIDNEY	0.37	0.39	0.0627	FALSE	1	78	7	7	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND6--MT-TE	5	1	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0448	0.009	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU349_KIDNEY	0.86	1	0.0538	FALSE	499	1288	110	792	0	FALSE	ACH-000907
SNU349_KIDNEY	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0448	0.009	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU349_KIDNEY	0.86	1	0.0538	FALSE	292	1546	117	613	0	FALSE	ACH-000907
SNU349_KIDNEY	AC073072.5--STEAP1B	5	0	AC073072.5	1053	chr7:22767187:-	STEAP1B	9322	chr7:22534505:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0448	0	NEIGHBORS[92470],AC073072.5->chr7:22765014-22767239:-,STEAP1B->STEAP_family_member_1B,chr7:22459063-22672544:-	SNU349_KIDNEY	1	1	0.0448	FALSE	1	7	0	3	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU349_KIDNEY	1	1	0.0448	FALSE	499	1288	110	792	0	FALSE	ACH-000907
SNU349_KIDNEY	MYH9--MT2A	5	0	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	0	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SNU349_KIDNEY	1	1	0.0448	TRUE	0	0	0	24	0	FALSE	ACH-000907
SNU349_KIDNEY	PSAP--GAPDH	5	0	PSAP	8532	chr10:73581669:-	GAPDH	20232	chr12:6646882:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	0	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	SNU349_KIDNEY	1	1	0.0448	TRUE	0	0	0	8	0	TRUE	ACH-000907
SNU349_KIDNEY	NRIP1--AF127936.7	4	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.47	1	0.0358	0.0269	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU349_KIDNEY	0.47	1	0.0627	FALSE	164	806	69	479	0	FALSE	ACH-000907
SNU349_KIDNEY	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.78	0.0358	0.0269	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU349_KIDNEY	0.78	1	0.0627	FALSE	467	2173	244	435	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND4--MT-ND4L	4	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0.0179	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU349_KIDNEY	1	1	0.0537	FALSE	344	821	44	306	0	FALSE	ACH-000907
SNU349_KIDNEY	SLC16A12--LIPA	4	2	SLC16A12	5062	chr10:91222136:-	LIPA	29664	chr10:91007406:-	ONLY_REF_SPLICE	YES	12	111	0.33	0.05	0.0358	0.0179	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SNU349_KIDNEY	0.05	0.33	0.0537	FALSE	12	128	21	13	0	FALSE	ACH-000907
SNU349_KIDNEY	SMS--PHEX	4	1	SMS	2916	chrX:21985434:+	PHEX	28832	chrX:22129585:+	ONLY_REF_SPLICE	YES	452	1	0.01	0.83	0.0358	0.009	NEIGHBORS[24761],SMS->chrX:21958691-22025798:+,spermine_synthase,PHEX->chrX:22050559-22269427:+,phosphate_regulating_endopeptidase_homolog,_X-linked	SNU349_KIDNEY	0.01	0.83	0.0448	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	CTD-2337A12.1--CAST	2	8	CTD-2337A12.1	7488	chr5:95966789:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	42	1	0.19	0.0179	0.0716	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU349_KIDNEY	0.19	1	0.0895	TRUE	18	50	10	12	0	FALSE	ACH-000907
SNU349_KIDNEY	EIF1--RPS28	4	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SNU349_KIDNEY	1	1	0.0358	TRUE	0	0	0	81	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU349_KIDNEY	1	1	0.0358	FALSE	344	821	44	306	0	FALSE	ACH-000907
SNU349_KIDNEY	PSAP--GAPDH	4	0	PSAP	8522	chr10:73581679:-	GAPDH	20181	chr12:6646831:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	GTEx&tcga_normals:1/3694=0.03%,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	SNU349_KIDNEY	1	1	0.0358	TRUE	0	0	0	8	0	TRUE	ACH-000907
SNU349_KIDNEY	CTD-2337A12.1--CAST	3	3	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	102	1	0.06	0.0269	0.0269	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU349_KIDNEY	0.06	1	0.0538	TRUE	15	36	8	26	0	FALSE	ACH-000907
SNU349_KIDNEY	SERPINE1--MT-ND4	3	2	SERPINE1	4752	chr7:100775245:+	MT-ND4	14095	chrM:11224:+	INCL_NON_REF_SPLICE	YES	7031	12775	0	0	0.0269	0.0179	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SNU349_KIDNEY	0	0	0.0448	FALSE	1	0	0	29	0	FALSE	ACH-000907
SNU349_KIDNEY	SLC16A12--LIPA	3	2	SLC16A12	5062	chr10:91222136:-	LIPA	24090	chr10:91053425:-	ONLY_REF_SPLICE	YES	12	13	0.29	0.28	0.0269	0.0179	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SNU349_KIDNEY	0.28	0.29	0.0448	FALSE	3	9	0	3	0	FALSE	ACH-000907
SNU349_KIDNEY	VIM--SERPINE1	3	2	VIM	2158	chr10:17271415:+	SERPINE1	12281	chr7:100770446:+	INCL_NON_REF_SPLICE	YES	6748	0	0	1	0.0269	0.0179	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,VIM->chr10:17270258-17279592:+,vimentin,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	SNU349_KIDNEY	0	1	0.0448	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	CCDC80--MT2A	3	1	CCDC80	5873	chr3:112357686:-	MT2A	18119	chr16:56642514:+	INCL_NON_REF_SPLICE	YES	3344	8	0	0.33	0.0269	0.009	GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},CCDC80->chr3:112323407-112368377:-,coiled-coil_domain_containing_80,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SNU349_KIDNEY	0	0.33	0.0359	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1478	0	0	1	0.0269	0.009	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU349_KIDNEY	0	1	0.0359	FALSE	13	9	0	364	0	FALSE	ACH-000907
SNU349_KIDNEY	PRR16--CTD-2334D19.1	2	5	PRR16	6887	chr5:119954260:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	42	0	0.14	1	0.0179	0.0448	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SNU349_KIDNEY	0.14	1	0.0627	FALSE	0	2	0	14	0	FALSE	ACH-000907
SNU349_KIDNEY	SERPINE1--MT-ND4	3	1	SERPINE1	4768	chr7:100775261:+	MT-ND4	14112	chrM:11241:+	INCL_NON_REF_SPLICE	YES	7039	12190	0	0	0.0269	0.009	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SNU349_KIDNEY	0	0	0.0359	FALSE	1	0	0	29	0	FALSE	ACH-000907
SNU349_KIDNEY	VIM--SERPINE1	3	1	VIM	2125	chr10:17271382:+	SERPINE1	15982	chr7:100775271:+	INCL_NON_REF_SPLICE	YES	178	6856	0.02	0	0.0269	0.009	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,VIM->chr10:17270258-17279592:+,vimentin,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	SNU349_KIDNEY	0	0.02	0.0359	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	HIF1A--CTD-2277K2.1	3	0	HIF1A	1327	chr14:62162557:+	CTD-2277K2.1	26514	chr14:62436850:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	NEIGHBORS[63716],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,CTD-2277K2.1->chr14:62278692-62437037:+	SNU349_KIDNEY	1	1	0.0269	FALSE	0	0	0	4	0	FALSE	ACH-000907
SNU349_KIDNEY	IFI27--MT-ND4L	3	0	IFI27	8929	chr14:94582869:+	MT-ND4L	12095	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU349_KIDNEY	1	1	0.0269	FALSE	0	0	0	13	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU349_KIDNEY	1	1	0.0269	FALSE	344	821	44	306	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND4--MT-ND4L	3	0	MT-ND4	1016	chrM:10775:+	MT-ND4L	5622	chrM:10713:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU349_KIDNEY	1	1	0.0269	FALSE	344	821	44	306	0	FALSE	ACH-000907
SNU349_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU349_KIDNEY	1	1	0.0269	FALSE	499	1288	110	792	0	FALSE	ACH-000907
SNU349_KIDNEY	SUN2--MT-CO3	3	0	SUN2	15799	chr22:39134945:-	MT-CO3	22695	chrM:9266:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	SUN2->Sad1_and_UNC84_domain_containing_2,chr22:39130730-39190148:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU349_KIDNEY	1	1	0.0269	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	SLC16A12--LIPA	2	3	SLC16A12	7310	chr10:91200865:-	LIPA	18335	chr10:91172679:-	ONLY_REF_SPLICE	YES	14	1	0.26	0.83	0.0179	0.0269	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SNU349_KIDNEY	0.26	0.83	0.0448	FALSE	0	1	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	AGRN--FLNA	1	5	AGRN	16637	chr1:987025:+	FLNA	36016	chrX:153586936:-	ONLY_REF_SPLICE	YES	1676	2711	0	0	0.009	0.0448	GTEx&tcga_normals:1/3694=0.03%,AGRN->agrin,chr1:955503-991496:+,FLNA->chrX:153576892-153603006:-,filamin_A	SNU349_KIDNEY	0	0	0.0538	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	COL8A1--CMSS1	2	1	COL8A1	1190	chr3:99357508:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	61	276	0.05	0.01	0.0179	0.009	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SNU349_KIDNEY	0.01	0.05	0.0269	FALSE	0	0	0	2	0	FALSE	ACH-000907
SNU349_KIDNEY	CRIM1--FEZ2	2	1	CRIM1	21418	chr2:36764689:+	FEZ2	41948	chr2:36785656:-	ONLY_REF_SPLICE	YES	1610	158	0	0.02	0.0179	0.009	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	SNU349_KIDNEY	0	0.02	0.0269	FALSE	0	0	0	2	0	FALSE	ACH-000907
SNU349_KIDNEY	CRIM1--FEZ2	2	1	CRIM1	21418	chr2:36764689:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	1610	172	0	0.02	0.0179	0.009	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	SNU349_KIDNEY	0	0.02	0.0269	FALSE	1	4	0	11	0	FALSE	ACH-000907
SNU349_KIDNEY	LINC01060--RP11-756P10.5	2	1	LINC01060	7782	chr4:189407019:+	RP11-756P10.5	17184	chr4:189705067:+	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0179	0.009	NEIGHBORS[95606],LINC01060->chr4:189321890-189602205:+,long_intergenic_non-protein_coding_RNA_1060,RP11-756P10.5->chr4:189697811-189706665:+	SNU349_KIDNEY	0.5	1	0.0269	FALSE	1	5	1	2	0	FALSE	ACH-000907
SNU349_KIDNEY	PICALM--SYTL2	2	1	PICALM	2232	chr11:85779693:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	235	14	0.01	0.18	0.0179	0.009	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	SNU349_KIDNEY	0.01	0.18	0.0269	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	SMS--PHEX	2	1	SMS	7497	chrX:21997084:+	PHEX	34339	chrX:22208561:+	ONLY_REF_SPLICE	YES	601	3	0	0.5	0.0179	0.009	NEIGHBORS[24761],SMS->chrX:21958691-22025798:+,spermine_synthase,PHEX->chrX:22050559-22269427:+,phosphate_regulating_endopeptidase_homolog,_X-linked	SNU349_KIDNEY	0	0.5	0.0269	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	AC010441.1--SYNPO	2	0	AC010441.1	1668	chr5:150158534:+	SYNPO	19833	chr5:150035966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	AC010441.1->chr5:150157867-150176297:+,SYNPO->chr5:149980642-150038782:+,synaptopodin	SNU349_KIDNEY	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000907
SNU349_KIDNEY	AGRN--FLNA	1	4	AGRN	19543	chr1:989931:+	FLNA	39679	chrX:153582095:-	ONLY_REF_SPLICE	NO	2153	3036	0	0	0.009	0.0358	GTEx&tcga_normals:1/3694=0.03%,AGRN->agrin,chr1:955503-991496:+,FLNA->chrX:153576892-153603006:-,filamin_A	SNU349_KIDNEY	0	0	0.0448	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	TNFRSF1A--PTMS	2	0	TNFRSF1A	1339	chr12:6450942:-	PTMS	13541	chr12:6878769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	TNFRSF1A->Oncogene{Bushman},chr12:6437923-6451280:-,tumor_necrosis_factor_receptor_superfamily_member_1A,PTMS->chr12:6874682-6880116:+,parathymosin	SNU349_KIDNEY	1	1	0.0179	TRUE	0	0	0	2	0	TRUE	ACH-000907
SNU349_KIDNEY	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SNU349_KIDNEY	1	1	0.0179	FALSE	272	151	14	158	0	FALSE	ACH-000907
SNU349_KIDNEY	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.009	0.0269	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU349_KIDNEY	0.8	1	0.0359	FALSE	275	511	55	178	0	FALSE	ACH-000907
SNU349_KIDNEY	PRSS23--TMEM135	1	2	PRSS23	15644	chr11:86650168:+	TMEM135	24785	chr11:86778736:+	ONLY_REF_SPLICE	YES	53	12	0.05	0.2	0.009	0.0179	NEIGHBORS[84934],PRSS23->chr11:86502101-86663952:+,protease,_serine_23,TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135	SNU349_KIDNEY	0.05	0.2	0.0269	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	PRSS23--TMEM135	1	2	PRSS23	15644	chr11:86650168:+	TMEM135	27012	chr11:86802404:+	ONLY_REF_SPLICE	YES	53	16	0.05	0.16	0.009	0.0179	NEIGHBORS[84934],PRSS23->chr11:86502101-86663952:+,protease,_serine_23,TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135	SNU349_KIDNEY	0.05	0.16	0.0269	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	SLC16A12--LIPA	1	2	SLC16A12	5062	chr10:91222136:-	LIPA	18335	chr10:91172679:-	ONLY_REF_SPLICE	YES	12	1	0.2	0.75	0.009	0.0179	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SNU349_KIDNEY	0.2	0.75	0.0269	FALSE	0	24	3	7	0	FALSE	ACH-000907
SNU349_KIDNEY	CRIM1--FEZ2	1	1	CRIM1	18863	chr2:36749456:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	1544	172	0	0.01	0.009	0.009	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	SNU349_KIDNEY	0	0.01	0.018	FALSE	2	2	0	15	0	FALSE	ACH-000907
SNU349_KIDNEY	FLNA--MYH9	1	1	FLNA	8815	chrX:153591029:-	MYH9	58947	chr22:36684459:-	ONLY_REF_SPLICE	YES	2422	2316	0	0	0.009	0.009	GTEx&tcga_normals:71/3694=1.92%,GTEx:1.22%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FLNA->chrX:153576892-153603006:-,filamin_A,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	SNU349_KIDNEY	0	0	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	NREP--STARD4	1	1	NREP	8408	chr5:111071127:-	STARD4	24765	chr5:110842077:-	ONLY_REF_SPLICE	NO	953	149	0	0.01	0.009	0.009	NREP->chr5:110998318-111333161:-,neuronal_regeneration_related_protein,STARD4->StAR_related_lipid_transfer_domain_containing_4,chr5:110831731-110848288:-	SNU349_KIDNEY	0	0.01	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	PRSS23--TMEM135	1	1	PRSS23	8412	chr11:86534635:+	TMEM135	27012	chr11:86802404:+	ONLY_REF_SPLICE	NO	63	16	0.03	0.11	0.009	0.009	NEIGHBORS[84934],PRSS23->chr11:86502101-86663952:+,protease,_serine_23,TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135	SNU349_KIDNEY	0.03	0.11	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	PRSS23--TMEM135	1	1	PRSS23	15644	chr11:86650168:+	TMEM135	31459	chr11:86947680:+	ONLY_REF_SPLICE	YES	53	9	0.04	0.18	0.009	0.009	NEIGHBORS[84934],PRSS23->chr11:86502101-86663952:+,protease,_serine_23,TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135	SNU349_KIDNEY	0.04	0.18	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000907
SNU349_KIDNEY	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.009	0.009	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU349_KIDNEY	1	1	0.018	TRUE	13	17	1	13	0	FALSE	ACH-000907
SNU349_KIDNEY	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.009	0.009	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU349_KIDNEY	1	1	0.018	TRUE	274	363	69	150	0	FALSE	ACH-000907
SNU349_KIDNEY	RP5-1070A16.1--SNX7	1	1	RP5-1070A16.1	1064	chr1:98676366:+	SNX7	11398	chr1:99150441:+	ONLY_REF_SPLICE	NO	1	79	0.67	0.02	0.009	0.009	RP5-1070A16.1->chr1:98676303-98738214:+,SNX7->chr1:99127236-99226056:+,sorting_nexin_7	SNU349_KIDNEY	0.02	0.67	0.018	TRUE	0	0	0	1	0	FALSE	ACH-000907
SQ1_LUNG	MT-TA--MT-TC	163	29	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1298	0.201	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SQ1_LUNG	1	1	1.3308	FALSE	462	80	0	856	0	FALSE	ACH-000553
SQ1_LUNG	ITGB1--DIDO1	122	0	ITGB1	23881	chr10:33200436:-	DIDO1	43165	chr20:61528171:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8456	0	ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1,DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1	SQ1_LUNG	1	1	0.8456	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	MT-TA--MT-TC	109	19	MT-TA	1053	chrM:5603:-	MT-TC	4081	chrM:5815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7555	0.1317	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SQ1_LUNG	1	1	0.8872	FALSE	462	80	0	856	0	FALSE	ACH-000553
SQ1_LUNG	TIMM23B--LINC00843	107	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7417	0.0901	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SQ1_LUNG	0.99	1	0.8318	TRUE	508	994	45	981	0	FALSE	ACH-000553
SQ1_LUNG	TIMM23--RP11-464F9.1	61	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	143	3	0.3	0.95	0.4228	0.0069	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SQ1_LUNG	0.3	0.95	0.4297	TRUE	519	3926	326	965	0	FALSE	ACH-000553
SQ1_LUNG	TSSC1--AC019172.2	50	16	TSSC1	12705	chr2:3261070:-	AC019172.2	25905	chr2:3894744:+	ONLY_REF_SPLICE	YES	58	0	0.53	1	0.3466	0.1109	TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1,AC019172.2->chr2:3891774-3895001:+	SQ1_LUNG	0.53	1	0.4575	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	49	0	MTATP6P1	1098	chr1:569173:+	MTND2P28	5521	chr1:565859:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3396	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	1	1	0.3396	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MT-ND6--MT-TE	47	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3258	0.0277	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SQ1_LUNG	1	1	0.3535	FALSE	499	1288	110	792	0	FALSE	ACH-000553
SQ1_LUNG	ZNF654--HMGB2	48	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3327	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SQ1_LUNG	1	1	0.3327	TRUE	0	0	0	518	0	FALSE	ACH-000553
SQ1_LUNG	MT-TA--MT-TN	21	78	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1456	0.5407	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SQ1_LUNG	1	1	0.6863	FALSE	369	2501	205	193	0	FALSE	ACH-000553
SQ1_LUNG	ARMC10--OSR1	40	0	ARMC10	12353	chr7:102740016:+	OSR1	19766	chr2:19554191:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2773	0	GTEx_FI:{Blood_Vessel=[count:3=pct:0.8],Brain=[count:3=pct:0.5],Thyroid=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Esophagus=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Ovary=[count:1=pct:1.9]},ARMC10->armadillo_repeat_containing_10,chr7:102715328-102740205:+,OSR1->chr2:19551246-19558414:-,odd-skipped_related_transciption_factor_1	SQ1_LUNG	1	1	0.2773	TRUE	15	4	0	8	0	FALSE	ACH-000553
SQ1_LUNG	MT-TA--MT-TN	40	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2773	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SQ1_LUNG	1	1	0.2773	FALSE	369	2501	205	193	0	FALSE	ACH-000553
SQ1_LUNG	MT-TC--MT-TY	35	2	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2426	0.0139	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SQ1_LUNG	1	1	0.2565	FALSE	51	280	19	36	0	FALSE	ACH-000553
SQ1_LUNG	PLXDC1--TAF13	34	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2357	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SQ1_LUNG	1	1	0.2357	TRUE	7	10	0	216	0	FALSE	ACH-000553
SQ1_LUNG	MT-TA--MT-TN	25	22	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1733	0.1525	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SQ1_LUNG	1	1	0.3258	FALSE	369	2501	205	193	0	FALSE	ACH-000553
SQ1_LUNG	MT-TC--MT-TY	8	71	MT-TC	1061	chrM:5766:-	MT-TY	4075	chrM:5883:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0.4921	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SQ1_LUNG	1	1	0.5476	FALSE	51	280	19	36	0	FALSE	ACH-000553
SQ1_LUNG	MT-TC--MT-TY	3	80	MT-TC	1065	chrM:5762:-	MT-TY	4067	chrM:5891:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0.5545	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SQ1_LUNG	1	1	0.5753	FALSE	51	280	19	36	0	FALSE	ACH-000553
SQ1_LUNG	MT-TA--MT-TN	11	46	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0762	0.3188	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SQ1_LUNG	1	1	0.395	FALSE	369	2501	205	193	0	FALSE	ACH-000553
SQ1_LUNG	MT-TA--MT-TC	21	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1456	0.0069	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SQ1_LUNG	1	1	0.1525	FALSE	462	80	0	856	0	FALSE	ACH-000553
SQ1_LUNG	MT-ND6--MT-TE	13	32	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0901	0.2218	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SQ1_LUNG	1	1	0.3119	FALSE	499	1288	110	792	0	FALSE	ACH-000553
SQ1_LUNG	MT-TA--MT-TN	14	25	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.097	0.1733	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SQ1_LUNG	1	1	0.2703	FALSE	369	2501	205	193	0	FALSE	ACH-000553
SQ1_LUNG	RP11-114H23.1--RP11-114H23.2	16	14	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1109	0.097	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SQ1_LUNG	1	1	0.2079	FALSE	81	155	12	160	0	FALSE	ACH-000553
SQ1_LUNG	C15orf57--CBX3	16	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	13	25	0.62	0.46	0.1109	0.0347	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SQ1_LUNG	0.46	0.62	0.1456	TRUE	267	562	48	632	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	14	12	MTATP6P1	1187	chr1:569262:+	MTND2P28	5274	chr1:565612:+	INCL_NON_REF_SPLICE	YES	2434	1404	0.01	0.02	0.097	0.0832	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	0.02	0.1802	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MT-ND6--MT-TE	13	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0901	0.0901	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SQ1_LUNG	0.93	1	0.1802	FALSE	499	1288	110	792	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	4	47	MTATP6P1	1499	chr1:569574:+	MTND2P28	4728	chr1:565066:+	INCL_NON_REF_SPLICE	YES	911	0	0.05	1	0.0277	0.3258	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.05	1	0.3535	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	C15orf57--CBX3	14	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	12	25	0.57	0.39	0.097	0.0139	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SQ1_LUNG	0.39	0.57	0.1109	TRUE	267	562	48	632	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	8	23	MTATP6P1	1177	chr1:569252:+	MTND2P28	4901	chr1:565239:+	INCL_NON_REF_SPLICE	YES	2060	4809	0.01	0.01	0.0555	0.1594	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	0.01	0.2149	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	LSM14A--PKHD1	13	2	LSM14A	1260	chr19:34663668:+	PKHD1	55197	chr6:51824824:-	ONLY_REF_SPLICE	YES	64	0	0.19	1	0.0901	0.0139	LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+,PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)	SQ1_LUNG	0.19	1	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	3	41	MTATP6P1	1400	chr1:569475:+	MTND2P28	4734	chr1:565072:+	INCL_NON_REF_SPLICE	YES	2827	0	0.02	1	0.0208	0.2842	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.02	1	0.305	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	3	41	MTATP6P1	1420	chr1:569495:+	MTND2P28	4701	chr1:565039:+	INCL_NON_REF_SPLICE	YES	2711	0	0.02	1	0.0208	0.2842	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.02	1	0.305	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MT-TA--MT-TN	3	38	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0.2634	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SQ1_LUNG	1	1	0.2842	FALSE	369	2501	205	193	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	10	9	MTATP6P1	1181	chr1:569256:+	MTND2P28	5268	chr1:565606:+	INCL_NON_REF_SPLICE	YES	2199	1406	0.01	0.01	0.0693	0.0624	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	0.01	0.1317	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	3	33	MTATP6P1	1240	chr1:569315:+	MTND2P28	4901	chr1:565239:+	INCL_NON_REF_SPLICE	YES	2819	4809	0.01	0.01	0.0208	0.2287	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	0.01	0.2495	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MT-TC--MT-TY	11	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0762	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SQ1_LUNG	1	1	0.0762	FALSE	51	280	19	36	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	6	20	MTATP6P1	1531	chr1:569606:+	MTND2P28	5271	chr1:565609:+	INCL_NON_REF_SPLICE	YES	888	1407	0.03	0.02	0.0416	0.1386	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.02	0.03	0.1802	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	3	32	MTATP6P1	1218	chr1:569293:+	MTND2P28	4879	chr1:565217:+	INCL_NON_REF_SPLICE	YES	2672	4912	0.01	0.01	0.0208	0.2218	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	0.01	0.2426	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	hsa-mir-6723--MTND2P28	3	31	hsa-mir-6723	2584	chr1:568037:+	MTND2P28	5558	chr1:565034:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0.2149	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	1	1	0.2357	TRUE	2	1	0	2	0	FALSE	ACH-000553
SQ1_LUNG	MT-TA--MT-TN	10	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0693	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SQ1_LUNG	1	1	0.0693	FALSE	369	2501	205	193	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	7	11	MTATP6P1	1232	chr1:569307:+	MTND2P28	5289	chr1:565627:+	INCL_NON_REF_SPLICE	YES	2740	1371	0.01	0.01	0.0485	0.0762	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	0.01	0.1247	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	6	14	MTATP6P1	1133	chr1:569208:+	MTND2P28	4695	chr1:565033:+	INCL_NON_REF_SPLICE	YES	1463	0	0.01	1	0.0416	0.097	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	1	0.1386	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	7	8	MTATP6P1	1122	chr1:569197:+	MTND2P28	4682	chr1:565020:+	INCL_NON_REF_SPLICE	YES	1101	0	0.01	1	0.0485	0.0555	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	1	0.104	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	hsa-mir-6723--MTND2P28	4	19	hsa-mir-6723	2075	chr1:567528:+	MTND2P28	5590	chr1:565066:+	INCL_NON_REF_SPLICE	YES	5067	0	0	1	0.0277	0.1317	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0	1	0.1594	TRUE	2	1	0	4	0	FALSE	ACH-000553
SQ1_LUNG	MT-ND6--MT-TE	4	18	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0.1248	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SQ1_LUNG	1	1	0.1525	FALSE	499	1288	110	792	0	FALSE	ACH-000553
SQ1_LUNG	MT-ND6--MT-TE	8	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SQ1_LUNG	1	1	0.0555	FALSE	499	1288	110	792	0	FALSE	ACH-000553
SQ1_LUNG	MT-TA--MT-TN	8	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SQ1_LUNG	1	1	0.0555	FALSE	369	2501	205	193	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	6	8	MTATP6P1	1123	chr1:569198:+	MTND2P28	4879	chr1:565217:+	INCL_NON_REF_SPLICE	YES	1102	4912	0.01	0	0.0416	0.0555	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0	0.01	0.0971	FALSE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	5	10	MTATP6P1	1200	chr1:569275:+	MTND2P28	5380	chr1:565718:+	INCL_NON_REF_SPLICE	YES	2765	894	0.01	0.02	0.0347	0.0693	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	0.02	0.104	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	4	14	MTATP6P1	1516	chr1:569591:+	MTND2P28	5380	chr1:565718:+	INCL_NON_REF_SPLICE	YES	906	894	0.02	0.02	0.0277	0.097	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.02	0.02	0.1247	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	7	2	MTATP6P1	1115	chr1:569190:+	MTND2P28	5268	chr1:565606:+	INCL_NON_REF_SPLICE	YES	893	1406	0.01	0.01	0.0485	0.0139	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	0.01	0.0624	FALSE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	hsa-mir-6723--MTND2P28	5	10	hsa-mir-6723	1637	chr1:567090:+	MTND2P28	5590	chr1:565066:+	INCL_NON_REF_SPLICE	YES	316	0	0.05	1	0.0347	0.0693	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.05	1	0.104	TRUE	2	1	0	4	0	FALSE	ACH-000553
SQ1_LUNG	hsa-mir-6723--MTND2P28	6	5	hsa-mir-6723	1636	chr1:567089:+	MTND2P28	6237	chr1:565713:+	INCL_NON_REF_SPLICE	YES	315	881	0.03	0.01	0.0416	0.0347	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	0.03	0.0763	FALSE	2	1	0	4	0	FALSE	ACH-000553
SQ1_LUNG	MT-ND6--MT-TE	4	12	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0.0832	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SQ1_LUNG	1	1	0.1109	FALSE	499	1288	110	792	0	FALSE	ACH-000553
SQ1_LUNG	MT-TA--MT-TN	7	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SQ1_LUNG	1	1	0.0485	FALSE	369	2501	205	193	0	FALSE	ACH-000553
SQ1_LUNG	MT-TC--MT-TY	7	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SQ1_LUNG	1	1	0.0485	FALSE	51	280	19	36	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	7	0	MTATP6P1	1158	chr1:569233:+	MTND2P28	5581	chr1:565919:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	1	1	0.0485	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	6	4	MTATP6P1	1140	chr1:569215:+	MTND2P28	5395	chr1:565733:+	INCL_NON_REF_SPLICE	YES	1775	621	0.01	0.02	0.0416	0.0277	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	0.02	0.0693	FALSE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	NIPA2--POLA1	7	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SQ1_LUNG	1	1	0.0485	TRUE	46	1352	75	139	0	FALSE	ACH-000553
SQ1_LUNG	TSSC1--AC019172.2	3	16	TSSC1	12703	chr2:3261072:-	AC019172.2	25906	chr2:3894745:+	INCL_NON_REF_SPLICE	YES	58	0	0.25	1	0.0208	0.1109	TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1,AC019172.2->chr2:3891774-3895001:+	SQ1_LUNG	0.25	1	0.1317	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	3	14	MTATP6P1	1620	chr1:569695:+	MTND2P28	5380	chr1:565718:+	INCL_NON_REF_SPLICE	YES	1	894	0.94	0.02	0.0208	0.097	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.02	0.94	0.1178	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	3	14	MTATP6P1	1683	chr1:569758:+	MTND2P28	5360	chr1:565698:+	INCL_NON_REF_SPLICE	YES	0	1048	1	0.02	0.0208	0.097	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.02	1	0.1178	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	RP11-96H19.1--RP11-446N19.1	6	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0416	0.0139	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SQ1_LUNG	0.89	1	0.0555	FALSE	515	4851	409	746	0	FALSE	ACH-000553
SQ1_LUNG	hsa-mir-6723--MTND2P28	4	10	hsa-mir-6723	1527	chr1:566980:+	MTND2P28	5560	chr1:565036:+	INCL_NON_REF_SPLICE	NO	319	0	0.04	1	0.0277	0.0693	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.04	1	0.097	TRUE	2	1	0	4	0	FALSE	ACH-000553
SQ1_LUNG	hsa-mir-6723--MTND2P28	4	10	hsa-mir-6723	1554	chr1:567007:+	MTND2P28	5588	chr1:565064:+	INCL_NON_REF_SPLICE	YES	303	0	0.04	1	0.0277	0.0693	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.04	1	0.097	TRUE	2	1	0	4	0	FALSE	ACH-000553
SQ1_LUNG	MT-ND6--MT-TE	5	5	MT-ND6	1111	chrM:14563:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0.0347	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SQ1_LUNG	1	1	0.0694	FALSE	499	1288	110	792	0	FALSE	ACH-000553
SQ1_LUNG	MT-TA--MT-TC	3	13	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0.0901	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SQ1_LUNG	1	1	0.1109	FALSE	462	80	0	856	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	3	13	MTATP6P1	1167	chr1:569242:+	MTND2P28	5248	chr1:565586:+	INCL_NON_REF_SPLICE	YES	1959	1701	0.01	0.01	0.0208	0.0901	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	0.01	0.1109	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	hsa-mir-6723--MTND2P28	5	5	hsa-mir-6723	1578	chr1:567031:+	MTND2P28	6224	chr1:565700:+	INCL_NON_REF_SPLICE	YES	304	965	0.03	0.01	0.0347	0.0347	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	0.03	0.0694	FALSE	2	1	0	4	0	FALSE	ACH-000553
SQ1_LUNG	hsa-mir-6723--MTND2P28	5	5	hsa-mir-6723	1933	chr1:567386:+	MTND2P28	6146	chr1:565622:+	INCL_NON_REF_SPLICE	YES	2464	1370	0	0.01	0.0347	0.0347	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0	0.01	0.0694	FALSE	2	1	0	4	0	FALSE	ACH-000553
SQ1_LUNG	MT-ND6--MT-TE	5	4	MT-ND6	1055	chrM:14619:-	MT-TE	4553	chrM:14715:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0.0277	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SQ1_LUNG	1	1	0.0624	FALSE	499	1288	110	792	0	FALSE	ACH-000553
SQ1_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SQ1_LUNG	1	1	0.0416	FALSE	499	1288	110	792	0	FALSE	ACH-000553
SQ1_LUNG	MT-ND6--MT-TE	5	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0.0277	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SQ1_LUNG	1	1	0.0624	FALSE	499	1288	110	792	0	FALSE	ACH-000553
SQ1_LUNG	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SQ1_LUNG	1	1	0.0416	FALSE	369	2501	205	193	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	6	0	MTATP6P1	1123	chr1:569198:+	MTND2P28	5507	chr1:565845:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	1	1	0.0416	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	4	8	MTATP6P1	1178	chr1:569253:+	MTND2P28	5334	chr1:565672:+	INCL_NON_REF_SPLICE	YES	2096	1219	0.01	0.01	0.0277	0.0555	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	0.01	0.0832	FALSE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	4	8	MTATP6P1	1182	chr1:569257:+	MTND2P28	5338	chr1:565676:+	INCL_NON_REF_SPLICE	YES	2212	1206	0.01	0.01	0.0277	0.0555	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	0.01	0.0832	FALSE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	5	3	MTATP6P1	1171	chr1:569246:+	MTND2P28	5502	chr1:565840:+	INCL_NON_REF_SPLICE	YES	1960	63	0	0.11	0.0347	0.0208	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0	0.11	0.0555	FALSE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	hsa-mir-6723--MTND2P28	3	11	hsa-mir-6723	2529	chr1:567982:+	MTND2P28	6139	chr1:565615:+	INCL_NON_REF_SPLICE	YES	0	1379	1	0.01	0.0208	0.0762	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	1	0.097	FALSE	2	1	0	4	0	FALSE	ACH-000553
SQ1_LUNG	hsa-mir-6723--MTND2P28	4	7	hsa-mir-6723	1629	chr1:567082:+	MTND2P28	5814	chr1:565290:+	INCL_NON_REF_SPLICE	YES	312	2827	0.03	0	0.0277	0.0485	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0	0.03	0.0762	FALSE	2	1	0	4	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	3	10	MTATP6P1	1211	chr1:569286:+	MTND2P28	5367	chr1:565705:+	INCL_NON_REF_SPLICE	YES	2705	1000	0	0.01	0.0208	0.0693	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0	0.01	0.0901	FALSE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	hsa-mir-6723--MTND2P28	3	10	hsa-mir-6723	1567	chr1:567020:+	MTND2P28	5598	chr1:565074:+	INCL_NON_REF_SPLICE	YES	301	0	0.04	1	0.0208	0.0693	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.04	1	0.0901	TRUE	2	1	0	4	0	FALSE	ACH-000553
SQ1_LUNG	hsa-mir-6723--MTND2P28	3	10	hsa-mir-6723	1578	chr1:567031:+	MTND2P28	5558	chr1:565034:+	INCL_NON_REF_SPLICE	YES	304	0	0.04	1	0.0208	0.0693	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.04	1	0.0901	TRUE	2	1	0	4	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	3	9	MTATP6P1	1124	chr1:569199:+	MTND2P28	4684	chr1:565022:+	INCL_NON_REF_SPLICE	YES	1136	0	0.01	1	0.0208	0.0624	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	1	0.0832	FALSE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	3	9	MTATP6P1	1220	chr1:569295:+	MTND2P28	5406	chr1:565744:+	INCL_NON_REF_SPLICE	YES	2658	493	0	0.02	0.0208	0.0624	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0	0.02	0.0832	FALSE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	4	5	MTATP6P1	1132	chr1:569207:+	MTND2P28	5271	chr1:565609:+	INCL_NON_REF_SPLICE	YES	1439	1407	0.01	0.01	0.0277	0.0347	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	0.01	0.0624	FALSE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	RP11-114H23.1--RP11-114H23.2	4	5	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	0	2	1	0.82	0.0277	0.0347	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SQ1_LUNG	0.82	1	0.0624	FALSE	81	155	12	160	0	FALSE	ACH-000553
SQ1_LUNG	ADK--AP3M1	5	0	ADK	4621	chr10:75960596:+	AP3M1	22249	chr10:75898140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:+:-:[139],ADK->adenosine_kinase,chr10:75910960-76469061:+,AP3M1->adaptor_related_protein_complex_3_mu_1_subunit,chr10:75881524-75910821:-	SQ1_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	5	0	MTATP6P1	1090	chr1:569165:+	MTND2P28	4686	chr1:565024:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	1	1	0.0347	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	hsa-mir-6723--MTND2P28	3	7	hsa-mir-6723	2111	chr1:567564:+	MTND2P28	6226	chr1:565702:+	INCL_NON_REF_SPLICE	YES	2973	953	0	0.01	0.0208	0.0485	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0	0.01	0.0693	FALSE	2	1	0	4	0	FALSE	ACH-000553
SQ1_LUNG	hsa-mir-6723--MTND2P28	3	7	hsa-mir-6723	2113	chr1:567566:+	MTND2P28	6229	chr1:565705:+	INCL_NON_REF_SPLICE	YES	2876	945	0	0.01	0.0208	0.0485	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0	0.01	0.0693	FALSE	2	1	0	4	0	FALSE	ACH-000553
SQ1_LUNG	C15orf57--CBX3	4	2	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	12	25	0.33	0.19	0.0277	0.0139	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SQ1_LUNG	0.19	0.33	0.0416	TRUE	267	562	48	632	0	FALSE	ACH-000553
SQ1_LUNG	MT-ND6--MT-TE	3	5	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0208	0.0347	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SQ1_LUNG	0.89	1	0.0555	FALSE	499	1288	110	792	0	FALSE	ACH-000553
SQ1_LUNG	MT-TA--MT-TY	4	1	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0.0069	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SQ1_LUNG	1	1	0.0346	FALSE	13	214	14	42	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	4	1	MTATP6P1	1121	chr1:569196:+	MTND2P28	5397	chr1:565735:+	INCL_NON_REF_SPLICE	YES	1064	613	0	0.01	0.0277	0.0069	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0	0.01	0.0346	FALSE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	4	1	MTATP6P1	1122	chr1:569197:+	MTND2P28	5360	chr1:565698:+	INCL_NON_REF_SPLICE	YES	1101	1048	0	0	0.0277	0.0069	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0	0	0.0346	FALSE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	4	1	MTATP6P1	1123	chr1:569198:+	MTND2P28	5348	chr1:565686:+	INCL_NON_REF_SPLICE	YES	1102	1163	0	0	0.0277	0.0069	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0	0	0.0346	FALSE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.33	0.0277	0.0069	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SQ1_LUNG	0.33	1	0.0346	TRUE	458	1351	185	561	0	FALSE	ACH-000553
SQ1_LUNG	TSSC1--AC019172.2	3	5	TSSC1	4895	chr2:3341788:-	AC019172.2	25905	chr2:3894744:+	ONLY_REF_SPLICE	YES	86	0	0.09	1	0.0208	0.0347	TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1,AC019172.2->chr2:3891774-3895001:+	SQ1_LUNG	0.09	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	hsa-mir-6723--MTND2P28	3	5	hsa-mir-6723	1958	chr1:567411:+	MTND2P28	6252	chr1:565728:+	INCL_NON_REF_SPLICE	YES	3518	639	0	0.01	0.0208	0.0347	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0	0.01	0.0555	FALSE	2	1	0	4	0	FALSE	ACH-000553
SQ1_LUNG	hsa-mir-6723--MTND2P28	3	5	hsa-mir-6723	1297	chr1:566750:+	MTND2P28	6247	chr1:565723:+	INCL_NON_REF_SPLICE	YES	193	735	0.04	0.01	0.0208	0.0347	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	0.04	0.0555	FALSE	2	0	0	4	0	FALSE	ACH-000553
SQ1_LUNG	hsa-mir-6723--MTND2P28	3	5	hsa-mir-6723	1936	chr1:567389:+	MTND2P28	6185	chr1:565661:+	INCL_NON_REF_SPLICE	YES	2659	1190	0	0.01	0.0208	0.0347	GTEx_FI:{Heart=[count:2=pct:0.8],Brain=[count:1=pct:0.2]},LOCAL_REARRANGEMENT:+:[391],hsa-mir-6723->chr1:566454-567996:+,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0	0.01	0.0555	FALSE	2	1	0	4	0	FALSE	ACH-000553
SQ1_LUNG	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SQ1_LUNG	1	1	0.0277	FALSE	369	2501	205	193	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	4	0	MTATP6P1	1086	chr1:569161:+	MTND2P28	4682	chr1:565020:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	1	1	0.0277	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	4	0	MTATP6P1	1410	chr1:569485:+	MTND2P28	5601	chr1:565939:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	1	1	0.0277	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	TACSTD2--ILF3	4	0	TACSTD2	1762	chr1:59042405:-	ILF3	17534	chr19:10794099:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	TACSTD2->Oncogene{Bushman},chr1:59041099-59043166:-,tumor-associated_calcium_signal_transducer_2,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	SQ1_LUNG	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0.0139	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SQ1_LUNG	1	1	0.0347	FALSE	467	2173	244	435	0	FALSE	ACH-000553
SQ1_LUNG	MT-TA--MT-TC	3	1	MT-TA	1023	chrM:5633:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0.0069	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SQ1_LUNG	1	1	0.0277	FALSE	462	80	0	856	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	3	1	MTATP6P1	1098	chr1:569173:+	MTND2P28	4701	chr1:565039:+	INCL_NON_REF_SPLICE	YES	557	0	0.01	1	0.0208	0.0069	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0.01	1	0.0277	FALSE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	3	1	MTATP6P1	1123	chr1:569198:+	MTND2P28	5312	chr1:565650:+	INCL_NON_REF_SPLICE	YES	1102	1289	0	0	0.0208	0.0069	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	0	0	0.0277	FALSE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	ADK--AP3M1	3	0	ADK	4621	chr10:75960596:+	AP3M1	21700	chr10:75898689:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:+:-:[139],ADK->adenosine_kinase,chr10:75910960-76469061:+,AP3M1->adaptor_related_protein_complex_3_mu_1_subunit,chr10:75881524-75910821:-	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	BRPF3--KRT8	3	0	BRPF3	3363	chr6:36168554:+	KRT8	31933	chr12:53293704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	BRPF3->bromodomain_and_PHD_finger_containing_3,chr6:36164521-36200567:+,KRT8->chr12:53290977-53343738:-,keratin_8	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	CDKN2AIP--WWC2	3	0	CDKN2AIP	2757	chr4:184367500:+	WWC2	33213	chr4:184233494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	CDKN2AIP->CDKN2A_interacting_protein,chr4:184365744-184369351:+,WWC2->WW_and_C2_domain_containing_2,chr4:184020446-184241930:+	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	IFI27L2--MARK2	3	0	IFI27L2	3327	chr14:94594264:-	MARK2	26712	chr11:63677602:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	IFI27L2->chr14:94594116-94596590:-,interferon_alpha_inducible_protein_27_like_2,MARK2->chr11:63606400-63678491:+,microtubule_affinity_regulating_kinase_2	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	LSM14A--PKHD1	3	0	LSM14A	1260	chr19:34663668:+	PKHD1	56354	chr6:51799120:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+,PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	MISP--GJC1	3	0	MISP	1046	chr19:751171:+	GJC1	14840	chr17:42884837:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	MISP->chr19:751126-764319:+,mitotic_spindle_positioning,GJC1->chr17:42875816-42908184:-,gap_junction_protein_gamma_1	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	MT-TA--MT-TY	3	0	MT-TA	1023	chrM:5633:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SQ1_LUNG	1	1	0.0208	FALSE	13	214	14	42	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	3	0	MTATP6P1	1098	chr1:569173:+	MTND2P28	5380	chr1:565718:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	1	1	0.0208	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	3	0	MTATP6P1	1109	chr1:569184:+	MTND2P28	5532	chr1:565870:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	1	1	0.0208	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTATP6P1--MTND2P28	3	0	MTATP6P1	1104	chr1:569179:+	MTND2P28	5600	chr1:565938:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SQ1_LUNG	1	1	0.0208	TRUE	20	3	0	12	0	FALSE	ACH-000553
SQ1_LUNG	MTMR12--UBR5	3	0	MTMR12	7756	chr5:32268807:-	UBR5	27497	chr8:103373854:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	MTMR12->chr5:32227100-32313115:-,myotubularin_related_protein_12,UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	PTMAP5--G6PD	3	0	PTMAP5	1382	chr13:82264427:+	G6PD	11075	chrX:153761018:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	PTMAP5->chr13:82264046-82265207:+,prothymosin,_alpha_pseudogene_5,G6PD->chrX:153759606-153775787:-,glucose-6-phosphate_dehydrogenase	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	RP11-318K12.1--MYH9	3	0	RP11-318K12.1	7284	chr9:66699512:-	MYH9	33314	chr22:36701148:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	RP11-318K12.1->chr9:66693277-66721073:-,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	RP11-662B19.2--WDR37	3	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	SQ1_LUNG	1	1	0.0208	TRUE	31	42	1	25	0	FALSE	ACH-000553
SQ1_LUNG	RPL4--COX7B	3	0	RPL4	5210	chr15:66795741:-	COX7B	15678	chrX:77158166:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	RPL4->chr15:66790355-66816870:-,ribosomal_protein_L4,COX7B->chrX:77154935-77162870:+,cytochrome_c_oxidase_subunit_7B	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	SNRPA--FOXJ3	3	0	SNRPA	6240	chr19:41268874:+	FOXJ3	27363	chr1:42647645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	SNRPA->chr19:41256542-41271294:+,small_nuclear_ribonucleoprotein_polypeptide_A,FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	TGM2--NONO	3	0	TGM2	18664	chr20:36758562:-	NONO	35116	chrX:70520486:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0208	0	TGM2->chr20:36756863-36794980:-,transglutaminase_2,NONO->Oncogene{Bushman},chrX:70503042-70521018:+,non-POU_domain_containing,_octamer-binding	SQ1_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0139	0.0208	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SQ1_LUNG	0.83	1	0.0347	FALSE	407	2205	196	549	0	FALSE	ACH-000553
SQ1_LUNG	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	12	1	0.2	0.0139	0.0069	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SQ1_LUNG	0.2	1	0.0208	TRUE	465	1949	224	605	0	FALSE	ACH-000553
SQ1_LUNG	ABI2--RHOT1	2	0	ABI2	21157	chr2:204291992:+	RHOT1	45888	chr17:30498062:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	ABI2->abl-interactor_2,chr2:204192942-204312446:+,RHOT1->chr17:30469473-30580393:+,ras_homolog_family_member_T1	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	ADAM10--LACTB	2	0	ADAM10	22375	chr15:58902496:-	LACTB	36972	chr15:63433479:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	ADAM10->ADAM_metallopeptidase_domain_10,chr15:58887403-59042177:-,LACTB->Oncogene{Bushman},chr15:63413999-63434260:+,lactamase_beta	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	BSG--CSNK1G2	2	0	BSG	2405	chr19:572701:+	CSNK1G2	20194	chr19:1969507:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	CHAMP1--SF3B3	2	0	CHAMP1	2254	chr13:115086707:+	SF3B3	15983	chr16:70564648:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	CHAMP1->chr13:115079988-115092796:+,chromosome_alignment_maintaining_phosphoprotein_1,SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	DCBLD2--DGKH	2	0	DCBLD2	5444	chr3:98600384:-	DGKH	55268	chr13:42780175:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,DGKH->chr13:42614176-42830714:+,diacylglycerol_kinase_eta	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	DNAJC14--KDM5B	2	0	DNAJC14	6510	chr12:56216356:-	KDM5B	15104	chr1:202746222:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	DNAJC14->DnaJ_heat_shock_protein_family_(Hsp40)_member_C14,chr12:56214744-56224608:-,KDM5B->chr1:202696526-202778598:-,lysine_demethylase_5B	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	FANCC--CPSF7	2	0	FANCC	1184	chr9:98079808:-	CPSF7	29556	chr11:61196762:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	FANCC->ArcherDX_panel,Fanconi_anemia_complementation_group_C,FoundationOne_panel,Oncogene{Bushman},chr9:97861336-98079991:-,CPSF7->chr11:61170121-61197503:-,cleavage_and_polyadenylation_specific_factor_7	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	FBXL13--EZH2	2	0	FBXL13	10681	chr7:102613597:-	EZH2	46043	chr7:148512638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	FOXN2--ZBTB7B	2	0	FOXN2	1178	chr2:48541953:+	ZBTB7B	19173	chr1:154987131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	FOXN2->chr2:48541776-48606433:+,forkhead_box_N2,ZBTB7B->chr1:154975127-154990998:+,zinc_finger_and_BTB_domain_containing_7B	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	HMHA1--UBC	2	0	HMHA1	1241	chr19:1066162:+	UBC	23043	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	HMHA1->chr19:1065922-1086627:+,histocompatibility_(minor)_HA-1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	ILDR1--FBN1	2	0	ILDR1	1185	chr3:121740867:-	FBN1	21594	chr15:48888575:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	ILDR1->chr3:121706170-121741051:-,immunoglobulin_like_domain_containing_receptor_1,FBN1->chr15:48700503-48938046:-,fibrillin_1	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	KIAA0247--FAM208B	2	0	KIAA0247	1233	chr14:70078545:+	FAM208B	19367	chr10:5751493:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	KIAA0247->chr14:70078313-70181859:+,FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	LINC00472--SMYD3	2	0	LINC00472	4804	chr6:72126113:-	SMYD3	35676	chr1:246027188:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	LINC00472->chr6:72054047-72130472:-,long_intergenic_non-protein_coding_RNA_472,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	MAP4K3--HELLS	2	0	MAP4K3	11315	chr2:39552659:-	HELLS	48363	chr10:96331145:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	MAP4K3->chr2:39476407-39664453:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_3,HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	MTCH1--KRT7	2	0	MTCH1	3638	chr6:36946281:-	KRT7	18891	chr12:52632464:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	MTCH1->chr6:36935917-36954074:-,mitochondrial_carrier_1,KRT7->chr12:52626304-52645970:+,keratin_7	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	NDUFV3--SPC25	2	0	NDUFV3	5809	chr21:44317157:+	SPC25	21043	chr2:169733894:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,SPC25->SPC25,_NDC80_kinetochore_complex_component,chr2:169690642-169769881:-	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	NOP14--EIF4H	2	0	NOP14	4472	chr4:2956151:-	EIF4H	27006	chr7:73609499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	NOP14->NOP14_nucleolar_protein,chr4:2939660-2965112:-,EIF4H->chr7:73588575-73611431:+,eukaryotic_translation_initiation_factor_4H	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	POLE--UBE2I	2	0	POLE	1112	chr12:133263840:-	UBE2I	48866	chr16:1364021:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	PRTFDC1--CCNB1IP1	2	0	PRTFDC1	3368	chr10:25226113:-	CCNB1IP1	27934	chr14:20781960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	PRTFDC1->chr10:25137536-25241533:-,phosphoribosyl_transferase_domain_containing_1,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	RBMS1--REV1	2	0	RBMS1	1506	chr2:161349800:-	REV1	32717	chr2:100081447:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-,REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SQ1_LUNG	1	1	0.0139	TRUE	64	13	3	59	0	FALSE	ACH-000553
SQ1_LUNG	RPL23A--ZNF530	2	0	RPL23A	4787	chr17:27050658:+	ZNF530	16147	chr19:58123871:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	RPL23A->chr17:27046411-27051377:+,ribosomal_protein_L23a,ZNF530->chr19:58111253-58124090:+,zinc_finger_protein_530	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	RRN3--RBM48	2	0	RRN3	2472	chr16:15186366:-	RBM48	29009	chr7:92166165:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	RRN3->RRN3_homolog,_RNA_polymerase_I_transcription_factor,chr16:15153879-15188174:-,RBM48->RNA_binding_motif_protein_48,chr7:92158087-92167319:+	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	SULT1A1--SRP9	2	0	SULT1A1	2566	chr16:28631384:-	SRP9	15371	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	SULT1A1->chr16:28616903-28634946:-,sulfotransferase_family_1A_member_1,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	TKT--CD47	2	0	TKT	1217	chr3:53289852:-	CD47	22420	chr3:107799191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	TKT->chr3:53258723-53290068:-,transketolase,CD47->CD47_molecule,chr3:107762145-107809872:-	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	ZNF440--PARP14	2	0	ZNF440	1167	chr19:11925265:+	PARP14	34366	chr3:122446659:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0	ZNF440->chr19:11925099-11946016:+,zinc_finger_protein_440,PARP14->chr3:122399465-122449687:+,poly(ADP-ribose)_polymerase_family_member_14	SQ1_LUNG	1	1	0.0139	TRUE	0	0	0	1	0	TRUE	ACH-000553
SQ1_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0069	0.0208	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SQ1_LUNG	1	1	0.0277	FALSE	192	492	57	212	0	FALSE	ACH-000553
SQ1_LUNG	NCAPG2--ESYT2	1	2	NCAPG2	16200	chr7:158464206:-	ESYT2	42021	chr7:158591763:-	ONLY_REF_SPLICE	YES	86	9	0.03	0.25	0.0069	0.0139	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:-:[26166],NCAPG2->chr7:158424003-158497520:-,non-SMC_condensin_II_complex_subunit_G2,ESYT2->chr7:158523686-158622944:-,extended_synaptotagmin_protein_2	SQ1_LUNG	0.03	0.25	0.0208	TRUE	0	0	0	2	0	FALSE	ACH-000553
SQ1_LUNG	RLF--MYCL	1	2	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	NO	10	0	0.23	1	0.0069	0.0139	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	SQ1_LUNG	0.23	1	0.0208	TRUE	0	0	0	10	0	TRUE	ACH-000553
SQ1_LUNG	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	1003	52	0	0.05	0.0069	0.0139	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SQ1_LUNG	0	0.05	0.0208	FALSE	6	50	7	115	0	FALSE	ACH-000553
SQ1_LUNG	PLXNA1--EEF1D	1	1	PLXNA1	3377	chr3:126710409:+	EEF1D	43200	chr8:144669022:-	ONLY_REF_SPLICE	YES	157	83	0.01	0.02	0.0069	0.0069	PLXNA1->chr3:126707437-126756235:+,plexin_A1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SQ1_LUNG	0.01	0.02	0.0138	FALSE	0	0	0	1	0	FALSE	ACH-000553
PANC0327_PANCREAS	MT-ND4--MT-ND4L	226	35	MT-ND4	1170	chrM:10929:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	72	0	0.78	1	2.8269	0.4378	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.78	1	3.2647	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	LRRC1--NDRG3	127	61	LRRC1	3037	chr6:53707025:+	NDRG3	35921	chr20:35284935:-	ONLY_REF_SPLICE	YES	41	66	0.82	0.74	1.5885	0.763	LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1,NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-	PANC0327_PANCREAS	0.74	0.82	2.3515	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-ND5	122	3	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	2729	1	0.04	1.526	0.0375	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0327_PANCREAS	0.04	1	1.5635	FALSE	101	855	57	72	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-TA--MT-TC	109	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3634	0.1126	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0327_PANCREAS	1	1	1.476	FALSE	462	80	0	856	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-TA--MT-TN	110	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3759	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0327_PANCREAS	1	1	1.3759	FALSE	369	2501	205	193	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	4	248	MT-ND4	2281	chrM:12040:+	MT-ND4L	5383	chrM:10474:+	INCL_NON_REF_SPLICE	YES	158	0	0.61	1	0.05	3.102	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.61	1	3.152	FALSE	284	710	36	297	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	62	1	MT-ND4	1151	chrM:10910:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	NO	17031	349	0	0.15	0.7755	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.15	0.788	FALSE	230	193	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	3	234	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	1674	0	0.12	1	0.0375	2.9269	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.12	1	2.9644	FALSE	344	827	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	3	232	MT-ND4	1483	chrM:11242:+	MT-ND4L	5492	chrM:10583:+	INCL_NON_REF_SPLICE	YES	1562	0	0.13	1	0.0375	2.9019	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.13	1	2.9394	FALSE	344	827	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	5	221	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	57	0	0.8	1	0.0625	2.7643	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.8	1	2.8268	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	4	224	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	91	0	0.71	1	0.05	2.8018	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.71	1	2.8518	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	3	226	MT-ND4	1263	chrM:11022:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	170	0	0.57	1	0.0375	2.8269	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.57	1	2.8644	FALSE	344	827	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	3	225	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	106	0	0.68	1	0.0375	2.8144	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.68	1	2.8519	FALSE	344	827	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	4	220	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	56	0	0.8	1	0.05	2.7518	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.8	1	2.8018	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	3	224	MT-ND4	1213	chrM:10972:+	MT-ND4L	5376	chrM:10467:+	INCL_NON_REF_SPLICE	YES	109	0	0.68	1	0.0375	2.8018	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.68	1	2.8393	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	4	219	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	49	0	0.82	1	0.05	2.7393	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.82	1	2.7893	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	3	221	MT-ND4	1170	chrM:10929:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	NO	72	0	0.76	1	0.0375	2.7643	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.76	1	2.8018	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	4	217	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	29	0	0.88	1	0.05	2.7143	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.88	1	2.7643	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	3	218	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	32	0	0.87	1	0.0375	2.7268	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.87	1	2.7643	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-TE	56	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7005	0.075	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0327_PANCREAS	1	1	0.7755	FALSE	499	1288	110	792	0	FALSE	ACH-000139
PANC0327_PANCREAS	TIMM23B--PARGP1	54	8	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.6754	0.1001	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	PANC0327_PANCREAS	1	1	0.7755	TRUE	393	2105	140	19	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND5--MT-ATP8	46	26	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5	1	0.94	0.99	0.5754	0.3252	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0.94	0.99	0.9006	FALSE	43	37	8	105	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-TA--MT-TN	34	66	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4253	0.8255	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0327_PANCREAS	1	1	1.2508	FALSE	369	2501	205	193	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	4	185	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	23	0	0.89	1	0.05	2.314	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.89	1	2.364	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	4	184	MT-ND4	1081	chrM:10840:+	MT-ND4L	5526	chrM:10617:+	INCL_NON_REF_SPLICE	YES	22	0	0.9	1	0.05	2.3015	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.9	1	2.3515	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	4	178	MT-ND4	1984	chrM:11743:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	26791	0	0.01	1	0.05	2.2265	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.01	1	2.2765	FALSE	344	827	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	9	156	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	18	0	0.9	1	0.1126	1.9513	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.9	1	2.0639	FALSE	344	821	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MTAP--CDKN2B-AS1	44	14	MTAP	12211	chr9:21859424:+	CDKN2B-AS1	40771	chr9:22112319:+	ONLY_REF_SPLICE	YES	118	0	0.33	1	0.5504	0.1751	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	PANC0327_PANCREAS	0.33	1	0.7255	FALSE	0	5	0	4	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	29	61	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	21557	0	0	1	0.3627	0.763	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0	1	1.1257	FALSE	328	800	43	304	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	3	152	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	32	0	0.83	1	0.0375	1.9013	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.83	1	1.9388	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	4	145	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	238	0	0.39	1	0.05	1.8137	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.39	1	1.8637	FALSE	344	827	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-TA--MT-TN	27	53	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3377	0.6629	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0327_PANCREAS	1	1	1.0006	FALSE	369	2501	205	193	0	FALSE	ACH-000139
PANC0327_PANCREAS	GATAD2A--CTR9	35	11	GATAD2A	9305	chr19:19576423:+	CTR9	27323	chr11:10774219:+	ONLY_REF_SPLICE	YES	103	72	0.31	0.39	0.4378	0.1376	GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,CTR9->CTR9_homolog,_Paf1/RNA_polymerase_II_complex_component,chr11:10772534-10801290:+	PANC0327_PANCREAS	0.31	0.39	0.5754	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	37	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	21587	3	0	0.93	0.4628	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.93	0.4753	FALSE	230	193	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-TE	29	29	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.92	1	0.3627	0.3627	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0327_PANCREAS	0.92	1	0.7254	FALSE	499	1288	110	792	0	FALSE	ACH-000139
PANC0327_PANCREAS	TIMM23--RP11-464F9.1	36	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	213	4	0.15	0.9	0.4503	0.0125	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PANC0327_PANCREAS	0.15	0.9	0.4628	TRUE	519	3926	326	965	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND5--MT-ATP8	30	15	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	6829	5	0.01	0.9	0.3752	0.1876	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0.01	0.9	0.5628	FALSE	43	37	8	105	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	6	110	MT-ND4	1144	chrM:10903:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	49	0	0.7	1	0.075	1.3759	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.7	1	1.4509	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	3	116	MT-ND4	1175	chrM:10934:+	MT-ND4L	5626	chrM:10717:+	INCL_NON_REF_SPLICE	YES	76	0	0.61	1	0.0375	1.451	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.61	1	1.4885	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	4	112	MT-ND4	1144	chrM:10903:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	49	0	0.7	1	0.05	1.4009	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.7	1	1.4509	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	GLRB--LRBA	24	19	GLRB	6901	chr4:158043549:+	LRBA	69823	chr4:151358016:-	ONLY_REF_SPLICE	YES	11	24	0.8	0.64	0.3002	0.2377	{Klijn_CCL:Pancreas=1},GLRB->chr4:157997209-158093242:+,glycine_receptor_beta,LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-	PANC0327_PANCREAS	0.64	0.8	0.5379	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	3	103	MT-ND4	1107	chrM:10866:+	MT-ND4L	5633	chrM:10724:+	INCL_NON_REF_SPLICE	YES	26	0	0.8	1	0.0375	1.2883	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.8	1	1.3258	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	26	2	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	17031	0	0	1	0.3252	0.025	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	1	0.3502	FALSE	230	193	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	IFI27--MT-ND4L	24	2	IFI27	8929	chr14:94582869:+	MT-ND4L	12095	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1344	0	0.02	1	0.3002	0.025	IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.02	1	0.3252	FALSE	0	0	0	13	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-TA--MT-TC	22	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2752	0.1001	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0327_PANCREAS	1	1	0.3753	FALSE	462	80	0	856	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	19	19	MT-ND4	2053	chrM:11812:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	23773	95	0	0.29	0.2377	0.2377	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.29	0.4754	FALSE	231	215	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-TE	22	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2752	0.075	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0327_PANCREAS	1	1	0.3502	FALSE	499	1288	110	792	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND5--MT-ATP8	20	12	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9373	95	0	0.25	0.2502	0.1501	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.25	0.4003	FALSE	43	37	8	105	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	12	40	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	23914	0	0	1	0.1501	0.5003	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0	1	0.6504	FALSE	343	822	44	305	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	21	1	MT-ND4	1152	chrM:10911:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	17083	2	0	0.92	0.2627	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.92	0.2752	FALSE	230	193	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-TA--MT-TN	21	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2627	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0327_PANCREAS	1	1	0.2627	FALSE	369	2501	205	193	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-TA--MT-TN	12	35	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1501	0.4378	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0327_PANCREAS	1	1	0.5879	FALSE	369	2501	205	193	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	3	64	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	5	0	0.93	1	0.0375	0.8005	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.93	1	0.838	FALSE	344	821	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	3	64	MT-ND4	1031	chrM:10790:+	MT-ND4L	5509	chrM:10600:+	INCL_NON_REF_SPLICE	YES	6	0	0.92	1	0.0375	0.8005	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.92	1	0.838	FALSE	344	821	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	PSMC4--RXRB	18	2	PSMC4	4086	chr19:40480735:+	RXRB	11522	chr6:33167193:-	ONLY_REF_SPLICE	YES	178	9	0.1	0.69	0.2251	0.025	PSMC4->chr19:40476912-40487348:+,proteasome_26S_subunit,_ATPase_4,RXRB->chr6:33161365-33168630:-,retinoid_X_receptor_beta	PANC0327_PANCREAS	0.1	0.69	0.2501	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	18	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	21620	5	0	0.79	0.2251	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.79	0.2376	FALSE	230	198	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	5	53	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	64	0	0.48	1	0.0625	0.6629	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.48	1	0.7254	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-TA--MT-TN	12	23	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1501	0.2877	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0327_PANCREAS	1	1	0.4378	FALSE	369	2501	205	193	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-TA--MT-TN	12	23	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1501	0.2877	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0327_PANCREAS	1	1	0.4378	FALSE	369	2501	205	193	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	4	53	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	80	0	0.42	1	0.05	0.6629	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.42	1	0.7129	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	3	56	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	192	0	0.24	1	0.0375	0.7005	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.24	1	0.738	FALSE	344	827	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-TE	11	23	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1376	0.2877	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0327_PANCREAS	0.97	1	0.4253	FALSE	499	1288	110	792	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	7	38	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2456	0	0.02	1	0.0876	0.4753	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.02	1	0.5629	FALSE	344	827	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	ZNF654--HMGB2	16	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2001	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	PANC0327_PANCREAS	1	1	0.2001	TRUE	0	0	0	518	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	7	34	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	9057	0	0	1	0.0876	0.4253	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	1	0.5129	FALSE	222	212	16	282	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	12	14	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	228	0	0.1	1	0.1501	0.1751	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.1	1	0.3252	FALSE	344	827	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-TA--MT-TC	15	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1876	0.0125	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0327_PANCREAS	1	1	0.2001	FALSE	462	80	0	856	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	8	28	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	85	0	0.3	1	0.1001	0.3502	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.3	1	0.4503	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	6	36	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	108	0	0.28	1	0.075	0.4503	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.28	1	0.5253	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	5	37	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	205	0	0.17	1	0.0625	0.4628	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.17	1	0.5253	FALSE	344	827	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-TE	4	41	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	5	0	0.9	1	0.05	0.5128	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0327_PANCREAS	0.9	1	0.5628	FALSE	499	1288	110	792	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-TA--MT-TN	5	37	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0.4628	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0327_PANCREAS	1	1	0.5253	FALSE	369	2501	205	193	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	13	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	25285	5	0	0.75	0.1626	0.025	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.75	0.1876	FALSE	231	205	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	C15orf57--CBX3	12	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	23	29	0.42	0.37	0.1501	0.0625	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PANC0327_PANCREAS	0.37	0.42	0.2126	TRUE	267	562	48	632	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	5	33	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	76	0	0.33	1	0.0625	0.4128	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0.33	1	0.4753	FALSE	213	207	15	279	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND5--MT-ATP8	6	29	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.075	0.3627	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0.97	1	0.4377	FALSE	43	37	8	105	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-TE	3	41	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.9	1	0.0375	0.5128	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0327_PANCREAS	0.9	1	0.5503	FALSE	499	1288	110	792	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-TE	3	39	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	5	0	0.89	1	0.0375	0.4878	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0327_PANCREAS	0.89	1	0.5253	FALSE	499	1288	110	792	0	FALSE	ACH-000139
PANC0327_PANCREAS	NRIP1--AF127936.7	12	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.72	1	0.1501	0.0125	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0327_PANCREAS	0.72	1	0.1626	FALSE	292	1546	117	613	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND5--MT-ATP8	9	12	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	NO	5	652	0.81	0.03	0.1126	0.1501	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0.03	0.81	0.2627	FALSE	43	37	8	105	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	35	MT-ND4	2283	chrM:12042:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	66	0	0.37	1	0.0375	0.4378	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0.37	1	0.4753	FALSE	213	207	15	279	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-TA--MT-TN	4	31	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0.3878	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0327_PANCREAS	1	1	0.4378	FALSE	369	2501	205	193	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	10	6	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	30286	652	0	0.02	0.1251	0.075	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.02	0.2001	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND5--MT-ATP8	7	15	MT-ND5	2112	chrM:13448:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	9373	1	0	0.96	0.0876	0.1876	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.96	0.2752	FALSE	43	37	8	105	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	5	22	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	28230	0	0	1	0.0625	0.2752	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	1	0.3377	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	6	18	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	27495	0	0	1	0.075	0.2251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	1	0.3001	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	30	MT-ND4	2176	chrM:11935:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	12893	1	0	0.97	0.0375	0.3752	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.97	0.4127	FALSE	231	215	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	7	13	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	26316	95	0	0.17	0.0876	0.1626	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.17	0.2502	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-ND5	10	1	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	3	777	0.79	0.01	0.1251	0.0125	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0327_PANCREAS	0.01	0.79	0.1376	FALSE	101	855	57	72	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	4	24	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	26823	0	0	1	0.05	0.3002	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	1	0.3502	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	7	12	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	27737	5	0	0.79	0.0876	0.1501	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.79	0.2377	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	4	24	MT-ND4	1016	chrM:10775:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	YES	5	0	0.85	1	0.05	0.3002	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.85	1	0.3502	FALSE	344	821	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-TA--MT-TN	10	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1251	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0327_PANCREAS	1	1	0.1251	FALSE	369	2501	205	193	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	7	10	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	27255	1776	0	0.01	0.0876	0.1251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.01	0.2127	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-TA--MT-TC	7	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0876	0.1251	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0327_PANCREAS	1	1	0.2127	FALSE	462	80	0	856	0	FALSE	ACH-000139
PANC0327_PANCREAS	MYO6--IMPG1	9	2	MYO6	36985	chr6:76624777:+	IMPG1	64151	chr6:76633423:-	INCL_NON_REF_SPLICE	YES	135	0	0.08	1	0.1126	0.025	LOCAL_INVERSION:+:-:[1578],MYO6->chr6:76458909-76629254:+,myosin_VI,IMPG1->chr6:76630832-76782395:-,interphotoreceptor_matrix_proteoglycan_1	PANC0327_PANCREAS	0.08	1	0.1376	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	7	9	MT-ND4	1531	chrM:11290:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	31888	5	0	0.76	0.0876	0.1126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.76	0.2002	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	4	21	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4020	95	0.01	0.21	0.05	0.2627	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0.01	0.21	0.3127	FALSE	216	209	16	281	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-ND5	8	5	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	5254	1	0	0.1001	0.0625	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0327_PANCREAS	0	1	0.1626	FALSE	101	855	57	72	0	FALSE	ACH-000139
PANC0327_PANCREAS	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1126	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0327_PANCREAS	1	1	0.1126	FALSE	13	9	0	364	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	4	19	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	25893	95	0	0.19	0.05	0.2377	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.19	0.2877	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	23	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2	5	0.93	0.84	0.0375	0.2877	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0.84	0.93	0.3252	FALSE	209	205	15	279	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	4	19	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	27120	0	0	1	0.05	0.2377	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	1	0.2877	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	22	MT-ND4	1903	chrM:11662:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	NO	27872	0	0	1	0.0375	0.2752	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	1	0.3127	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	8	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	21587	5	0	0.64	0.1001	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.64	0.1126	FALSE	230	193	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	21	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8315	95	0	0.2	0.0375	0.2627	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.2	0.3002	FALSE	218	210	16	281	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	4	17	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	24	0	0.47	1	0.05	0.2126	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.47	1	0.2626	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	5	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	88	0	0.17	1	0.0625	0.1626	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.17	1	0.2251	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	PTPRM--MIB1	7	5	PTPRM	11589	chr18:7955412:+	MIB1	76887	chr18:19444487:+	ONLY_REF_SPLICE	YES	6	29	0.67	0.29	0.0876	0.0625	PTPRM->chr18:7566780-8406859:+,protein_tyrosine_phosphatase,_receptor_type_M,MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1	PANC0327_PANCREAS	0.29	0.67	0.1501	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	LRRC1--NDRG3	2	24	LRRC1	3037	chr6:53707025:+	NDRG3	38133	chr20:35282104:-	ONLY_REF_SPLICE	YES	41	85	0.39	0.23	0.025	0.3002	LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1,NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-	PANC0327_PANCREAS	0.23	0.39	0.3252	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	MT-TA--MT-TN	8	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1001	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0327_PANCREAS	1	1	0.1001	FALSE	369	2501	205	193	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-TA--MT-TN	8	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1001	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0327_PANCREAS	1	1	0.1001	FALSE	369	2501	205	193	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	7	3	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	28249	1776	0	0.01	0.0876	0.0375	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.01	0.1251	FALSE	231	205	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND5--MT-ATP8	3	19	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	5633	1	0	0.96	0.0375	0.2377	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.96	0.2752	FALSE	43	37	8	105	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	18	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	12681	652	0	0.03	0.0375	0.2251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.03	0.2626	FALSE	231	215	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	17	MT-ND4	1788	chrM:11547:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	27340	0	0	1	0.0375	0.2126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	1	0.2501	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	5	9	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	29824	0	0	1	0.0625	0.1126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	1	0.1751	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	17	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	27662	0	0	1	0.0375	0.2126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	1	0.2501	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	17	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	26837	1	0	0.95	0.0375	0.2126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.95	0.2501	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	LRRC1--NDRG3	2	20	LRRC1	1919	chr6:53660213:+	NDRG3	35921	chr20:35284935:-	ONLY_REF_SPLICE	YES	46	66	0.32	0.25	0.025	0.2502	LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1,NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-	PANC0327_PANCREAS	0.25	0.32	0.2752	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	MT-ND5--MT-ATP8	3	15	MT-ND5	2303	chrM:13639:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5562	95	0	0.16	0.0375	0.1876	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.16	0.2251	FALSE	43	37	8	105	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND5--MT-ATP8	3	15	MT-ND5	2514	chrM:13850:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	NO	5851	95	0	0.16	0.0375	0.1876	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.16	0.2251	FALSE	43	37	8	105	0	FALSE	ACH-000139
PANC0327_PANCREAS	MTAP--CDKN2B-AS1	6	2	MTAP	12211	chr9:21859424:+	CDKN2B-AS1	44409	chr9:22120503:+	ONLY_REF_SPLICE	YES	118	21	0.06	0.28	0.075	0.025	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	PANC0327_PANCREAS	0.06	0.28	0.1	FALSE	0	1	1	1	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	13	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	27329	1	0	0.94	0.0375	0.1626	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.94	0.2001	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	3	13	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	98	0	0.14	1	0.0375	0.1626	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	0.14	1	0.2001	FALSE	344	826	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND5--MT-ATP8	4	9	MT-ND5	2466	chrM:13802:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	5696	856	0	0.01	0.05	0.1126	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.01	0.1626	FALSE	43	37	8	105	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-ND5	6	1	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	3464	2665	0	0	0.075	0.0125	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0327_PANCREAS	0	0	0.0875	FALSE	101	855	57	72	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	6	0	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.075	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	1	1	0.075	FALSE	230	193	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	6	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.075	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	1	1	0.075	FALSE	344	821	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND5--MT-ATP8	4	8	MT-ND5	1692	chrM:13028:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7699	5	0	0.71	0.05	0.1001	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.71	0.1501	FALSE	42	36	7	104	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.075	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0327_PANCREAS	1	1	0.075	FALSE	499	1288	110	792	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	11	MT-ND4	1571	chrM:11330:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	29965	1	0	0.93	0.0375	0.1376	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.93	0.1751	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	4	7	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	30169	3	0	0.79	0.05	0.0876	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.79	0.1376	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	4	7	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	30049	95	0	0.1	0.05	0.0876	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.1	0.1376	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	11	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	NO	28036	575	0	0.02	0.0375	0.1376	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.02	0.1751	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-ND5	5	3	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	2696	1	0	0.0625	0.0375	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0327_PANCREAS	0	1	0.1	FALSE	101	855	57	72	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	10	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	30870	95	0	0.12	0.0375	0.1251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.12	0.1626	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	10	MT-ND4	1544	chrM:11303:+	MT-ATP8	5455	chrM:8442:+	INCL_NON_REF_SPLICE	YES	31582	1	0	0.93	0.0375	0.1251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.93	0.1626	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND5--MT-ATP8	3	10	MT-ND5	2687	chrM:14023:+	MT-ATP8	5957	chrM:8510:+	INCL_NON_REF_SPLICE	YES	1108	2021	0.01	0.01	0.0375	0.1251	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0.01	0.01	0.1626	FALSE	43	37	8	105	0	FALSE	ACH-000139
PANC0327_PANCREAS	NRIP1--AF127936.7	5	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.26	1	0.0625	0.025	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0327_PANCREAS	0.26	1	0.0875	FALSE	125	705	46	456	0	FALSE	ACH-000139
PANC0327_PANCREAS	C15orf57--CBX3	4	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	23	29	0.28	0.24	0.05	0.0625	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PANC0327_PANCREAS	0.24	0.28	0.1125	TRUE	267	562	48	632	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	5	1	MT-ND4	1084	chrM:10843:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	10327	0	0	1	0.0625	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	1	0.075	FALSE	230	193	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	9	MT-ND4	1531	chrM:11290:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	31888	2	0	0.86	0.0375	0.1126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.86	0.1501	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	9	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	29257	0	0	1	0.0375	0.1126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	1	0.1501	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	ASS1--MT-CO3	5	0	ASS1	7359	chr9:133339534:+	MT-CO3	21796	chrM:9549:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	ASS1->argininosuccinate_synthase_1,chr9:133320316-133376661:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PANC0327_PANCREAS	1	1	0.0625	FALSE	0	0	0	12	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	5	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	1	1	0.0625	FALSE	231	204	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	8	MT-ND4	1394	chrM:11153:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	29928	0	0	1	0.0375	0.1001	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	1	0.1376	FALSE	231	217	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-ND5	5	0	MT-ND6	1412	chrM:14262:-	MT-ND5	6311	chrM:14122:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0327_PANCREAS	1	1	0.0625	FALSE	101	855	57	72	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-TA--MT-TN	5	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PANC0327_PANCREAS	1	1	0.0625	FALSE	369	2501	205	193	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	4	3	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	21566	0	0	1	0.05	0.0375	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	1	0.0875	FALSE	230	197	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	4	2	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	22307	0	0	1	0.05	0.025	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	1	0.075	FALSE	231	204	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	6	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	29064	1	0	0.9	0.0375	0.075	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.9	0.1125	FALSE	231	216	16	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND5--MT-ND6	4	2	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	2	5049	0.75	0	0.05	0.025	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	PANC0327_PANCREAS	0	0.75	0.075	FALSE	26	124	4	93	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-ND5	4	2	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	NO	7	2705	0.46	0	0.05	0.025	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0327_PANCREAS	0	0.46	0.075	FALSE	101	855	57	72	0	FALSE	ACH-000139
PANC0327_PANCREAS	LRIG1--IFLTD1	4	1	LRIG1	6595	chr3:66501983:-	IFLTD1	44159	chr12:25656734:-	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.05	0.0125	LRIG1->Oncogene{Bushman},chr3:66429221-66551687:-,leucine-rich_repeats_and_immunoglobulin_like_domains_1,IFLTD1->chr12:25562241-25801513:-	PANC0327_PANCREAS	0.36	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	4	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21683	95	0	0.05	0.05	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.05	0.0625	FALSE	230	198	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-ND5	3	5	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	NO	0	5049	1	0	0.0375	0.0625	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0327_PANCREAS	0	1	0.1	FALSE	101	855	57	72	0	FALSE	ACH-000139
PANC0327_PANCREAS	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0327_PANCREAS	1	1	0.05	FALSE	13	9	0	364	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	4	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	1	1	0.05	FALSE	344	821	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	RP11-114H23.1--RP11-114H23.2	4	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.05	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	PANC0327_PANCREAS	1	1	0.05	FALSE	81	155	12	160	0	FALSE	ACH-000139
PANC0327_PANCREAS	WTAPP1--RUVBL1	4	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.05	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	PANC0327_PANCREAS	1	1	0.05	TRUE	9	252	6	66	0	FALSE	ACH-000139
PANC0327_PANCREAS	NRIP1--AF127936.7	2	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	28	0	0.24	1	0.025	0.0876	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0327_PANCREAS	0.24	1	0.1126	FALSE	164	806	69	479	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-ND5	3	2	MT-ND6	1434	chrM:14240:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	10	2705	0.33	0	0.0375	0.025	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PANC0327_PANCREAS	0	0.33	0.0625	FALSE	101	855	57	72	0	FALSE	ACH-000139
PANC0327_PANCREAS	PTPRG--ZNF546	3	2	PTPRG	16106	chr3:62177327:+	ZNF546	54740	chr19:40512003:+	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0375	0.025	{Klijn_CCL:Pancreas=1},PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,ZNF546->chr19:40490041-40523514:+,zinc_finger_protein_546	PANC0327_PANCREAS	0.56	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.71	0.83	0.0375	0.025	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PANC0327_PANCREAS	0.71	0.83	0.0625	FALSE	515	4851	409	746	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	21331	3	0	0.57	0.0375	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.57	0.05	FALSE	230	193	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	1	MT-ND4	1116	chrM:10875:+	MT-ATP8	5453	chrM:8440:+	INCL_NON_REF_SPLICE	YES	13563	1	0	0.8	0.0375	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.8	0.05	FALSE	230	193	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	NO	21683	260	0	0.02	0.0375	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.02	0.05	FALSE	230	198	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ATP8	3	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	21331	5	0	0.44	0.0375	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0327_PANCREAS	0	0.44	0.05	FALSE	230	193	14	283	0	FALSE	ACH-000139
PANC0327_PANCREAS	RP11-281P23.1--RP11-281P23.2	3	1	RP11-281P23.1	1582	chr4:11471455:+	RP11-281P23.2	13426	chr4:11771933:+	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0375	0.0125	RP11-281P23.1->chr4:11470874-11479820:+,RP11-281P23.2->chr4:11627338-11815582:+	PANC0327_PANCREAS	0.44	1	0.05	TRUE	0	1	1	4	1	TRUE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	3	0	MT-ND4	1019	chrM:10778:+	MT-ND4L	5617	chrM:10708:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	1	1	0.0375	FALSE	344	821	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND4--MT-ND4L	3	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0327_PANCREAS	1	1	0.0375	FALSE	344	821	44	306	0	FALSE	ACH-000139
PANC0327_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0327_PANCREAS	1	1	0.0375	FALSE	499	1288	110	792	0	FALSE	ACH-000139
PANC0327_PANCREAS	MTAP--CDKN2B-AS1	2	4	MTAP	9899	chr9:21854869:+	CDKN2B-AS1	40771	chr9:22112319:+	ONLY_REF_SPLICE	YES	88	0	0.06	1	0.025	0.05	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	PANC0327_PANCREAS	0.06	1	0.075	FALSE	0	0	0	1	0	FALSE	ACH-000139
PANC0327_PANCREAS	MTAP--CDKN2B-AS1	2	3	MTAP	12211	chr9:21859424:+	CDKN2B-AS1	44105	chr9:22120199:+	ONLY_REF_SPLICE	YES	118	26	0.04	0.16	0.025	0.0375	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	PANC0327_PANCREAS	0.04	0.16	0.0625	FALSE	0	1	1	1	0	FALSE	ACH-000139
PANC0327_PANCREAS	SNIP1--DNALI1	2	2	SNIP1	2400	chr1:38018246:-	DNALI1	17875	chr1:38027682:+	ONLY_REF_SPLICE	NO	38	22	0.1	0.15	0.025	0.025	{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[2617],SNIP1->Smad_nuclear_interacting_protein_1,chr1:38000050-38019903:-,DNALI1->chr1:38022520-38032458:+,dynein_axonemal_light_intermediate_chain_1	PANC0327_PANCREAS	0.1	0.15	0.05	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	MTAP--CDKN2B-AS1	1	5	MTAP	12211	chr9:21859424:+	CDKN2B-AS1	42981	chr9:22118643:+	ONLY_REF_SPLICE	YES	118	5	0.05	0.55	0.0125	0.0625	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	PANC0327_PANCREAS	0.05	0.55	0.075	FALSE	0	0	0	1	0	FALSE	ACH-000139
PANC0327_PANCREAS	LAMB3--RP1-28O10.1	2	0	LAMB3	2550	chr1:209824262:-	RP1-28O10.1	25983	chr1:209836406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_REARRANGEMENT:-:[8898],LAMB3->chr1:209788215-209825811:-,laminin_subunit_beta_3,RP1-28O10.1->chr1:209834709-209897470:-	PANC0327_PANCREAS	1	1	0.025	TRUE	0	1	0	1	1	TRUE	ACH-000139
PANC0327_PANCREAS	MAML2--CEP57	2	0	MAML2	2798	chr11:96074547:-	CEP57	19069	chr11:95532396:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GTEx_v2:{count=3;pct=0.03%;dist=Ovary=1,Thyroid=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Urinary_Bladder=1},MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,CEP57->centrosomal_protein_57,chr11:95523129-95565857:+	PANC0327_PANCREAS	1	1	0.025	TRUE	0	1	0	3	1	TRUE	ACH-000139
PANC0327_PANCREAS	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	PANC0327_PANCREAS	1	1	0.025	TRUE	145	312	16	51	0	FALSE	ACH-000139
PANC0327_PANCREAS	PC--PAFAH1B2	2	0	PC	3864	chr11:66719901:-	PAFAH1B2	36123	chr11:117046622:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	PC->chr11:66615704-66725847:-,pyruvate_carboxylase,PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2	PANC0327_PANCREAS	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	PPP1R12C--CNN2	2	0	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	PANC0327_PANCREAS	1	1	0.025	TRUE	35	34	3	30	0	FALSE	ACH-000139
PANC0327_PANCREAS	PSMC4--RXRB	1	2	PSMC4	4086	chr19:40480735:+	RXRB	12474	chr6:33166241:-	ONLY_REF_SPLICE	YES	178	14	0.02	0.18	0.0125	0.025	PSMC4->chr19:40476912-40487348:+,proteasome_26S_subunit,_ATPase_4,RXRB->chr6:33161365-33168630:-,retinoid_X_receptor_beta	PANC0327_PANCREAS	0.02	0.18	0.0375	TRUE	0	0	0	1	0	FALSE	ACH-000139
PANC0327_PANCREAS	CCDC86--CCND1	1	1	CCDC86	4468	chr11:60617487:+	CCND1	13403	chr11:69465886:+	ONLY_REF_SPLICE	YES	269	528	0.01	0	0.0125	0.0125	CCDC86->chr11:60609544-60618554:+,coiled-coil_domain_containing_86,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	PANC0327_PANCREAS	0	0.01	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000139
PANC0327_PANCREAS	LRP5--C11orf24	1	1	LRP5	6121	chr11:68133170:+	C11orf24	35199	chr11:68035719:-	ONLY_REF_SPLICE	NO	83	40	0.02	0.05	0.0125	0.0125	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:+:-:[40608],LRP5->LDL_receptor_related_protein_5,Oncogene{Bushman},chr11:68080077-68216743:+,C11orf24->chr11:68028803-68039469:-,chromosome_11_open_reading_frame_24	PANC0327_PANCREAS	0.02	0.05	0.025	TRUE	0	2	0	3	1	FALSE	ACH-000139
PANC0327_PANCREAS	LRRC1--SLA2	1	1	LRRC1	1919	chr6:53660213:+	SLA2	22991	chr20:35269781:-	ONLY_REF_SPLICE	YES	46	0	0.04	1	0.0125	0.0125	LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1,SLA2->Src-like-adaptor_2,chr20:35240721-35274619:-	PANC0327_PANCREAS	0.04	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000139
PANC0327_PANCREAS	PHF14--UACA	1	1	PHF14	25633	chr7:11151094:+	UACA	36586	chr15:70982850:-	ONLY_REF_SPLICE	YES	23	66	0.08	0.03	0.0125	0.0125	PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+,UACA->chr15:70946893-71055932:-,uveal_autoantigen_with_coiled-coil_domains_and_ankyrin_repeats	PANC0327_PANCREAS	0.03	0.08	0.025	TRUE	0	0	0	1	0	FALSE	ACH-000139
PANC0327_PANCREAS	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	16	0.33	0.11	0.0125	0.0125	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PANC0327_PANCREAS	0.11	0.33	0.025	FALSE	16	356	14	466	0	FALSE	ACH-000139
PANC0327_PANCREAS	SNHG8--ATF1	1	1	SNHG8	1429	chr4:119200292:+	ATF1	11449	chr12:51203239:+	ONLY_REF_SPLICE	YES	222	64	0.01	0.03	0.0125	0.0125	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,ATF1->Oncogene{Bushman},activating_transcription_factor_1,chr12:51157493-51214905:+	PANC0327_PANCREAS	0.01	0.03	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000139
HS695T_SKIN	PDS5B--TMTC4	121	7	PDS5B	1167	chr13:33160730:+	TMTC4	67554	chr13:101258681:-	ONLY_REF_SPLICE	YES	5	17	0.96	0.88	1.1448	0.0662	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,TMTC4->chr13:101256181-101327347:-,transmembrane_and_tetratricopeptide_repeat_containing_4	HS695T_SKIN	0.88	0.96	1.211	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	GOLGA4--MLH1	103	17	GOLGA4	19216	chr3:37357089:+	MLH1	57056	chr3:37070275:+	ONLY_REF_SPLICE	YES	0	62	1	0.66	0.9745	0.1608	YOSHIHARA_TCGA_num_samples[BRCA:1|PRAD:1],GOLGA4->chr3:37284668-37408242:+,golgin_A4,MLH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr3:37034823-37107380:+,mutL_homolog_1	HS695T_SKIN	0.66	1	1.1353	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	AP003900.6--AC011718.2	87	3	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	5	0	0.95	1	0.8231	0.0284	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	HS695T_SKIN	0.95	1	0.8515	TRUE	0	3	0	38	3	FALSE	ACH-000799
HS695T_SKIN	RP11-417J8.3--MLLT10P1	54	16	RP11-417J8.3	3008	chr1:142621059:+	MLLT10P1	15643	chr20:29638051:-	INCL_NON_REF_SPLICE	YES	22	0	0.76	1	0.5109	0.1514	RP11-417J8.3->chr1:142618769-142729975:+,MLLT10P1->chr20:29637799-29638060:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10_pseudogene_1	HS695T_SKIN	0.76	1	0.6623	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	MT-ND4--MT-ND4L	3	191	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	722	0	0.21	1	0.0284	1.807	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS695T_SKIN	0.21	1	1.8354	FALSE	344	827	44	306	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO2	47	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	64	8	0.45	0.87	0.4447	0.0473	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS695T_SKIN	0.45	0.87	0.492	FALSE	59	21	0	114	0	FALSE	ACH-000799
HS695T_SKIN	MT-ND4--MT-ND4L	3	180	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	8	0	0.96	1	0.0284	1.703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS695T_SKIN	0.96	1	1.7314	FALSE	344	826	44	306	0	FALSE	ACH-000799
HS695T_SKIN	MT-ND4--MT-ND4L	14	131	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	6326	0	0.02	1	0.1325	1.2394	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS695T_SKIN	0.02	1	1.3719	FALSE	344	827	44	306	0	FALSE	ACH-000799
HS695T_SKIN	MT-ND4--MT-ND4L	5	131	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	0	0.96	1	0.0473	1.2394	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS695T_SKIN	0.96	1	1.2867	FALSE	344	821	44	306	0	FALSE	ACH-000799
HS695T_SKIN	MT-ND6--MT-TE	35	4	MT-ND6	1051	chrM:14623:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3311	0.0378	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS695T_SKIN	1	1	0.3689	FALSE	499	1288	110	792	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO2	25	2	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	62	6	0.3	0.82	0.2365	0.0189	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS695T_SKIN	0.3	0.82	0.2554	FALSE	59	21	0	114	0	FALSE	ACH-000799
HS695T_SKIN	TIMM23B--LINC00843	24	5	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2271	0.0473	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS695T_SKIN	1	1	0.2744	TRUE	508	994	45	981	0	FALSE	ACH-000799
HS695T_SKIN	GPC4--HS6ST2	22	11	GPC4	1685	chrX:132548834:-	HS6ST2	24267	chrX:131763121:-	ONLY_REF_SPLICE	YES	79	84	0.29	0.28	0.2081	0.1041	GPC4->chrX:132434131-132549518:-,glypican_4,HS6ST2->chrX:131760044-132095423:-,heparan_sulfate_6-O-sulfotransferase_2	HS695T_SKIN	0.28	0.29	0.3122	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	MT-ND4--MT-ND4L	15	32	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	639	0	0.07	1	0.1419	0.3028	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS695T_SKIN	0.07	1	0.4447	FALSE	344	827	44	306	0	FALSE	ACH-000799
HS695T_SKIN	AP003900.6--AC011718.2	20	8	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	9	0	0.76	1	0.1892	0.0757	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	HS695T_SKIN	0.76	1	0.2649	TRUE	0	5	0	45	5	FALSE	ACH-000799
HS695T_SKIN	MT-ND4--MT-ND4L	8	47	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	12103	0	0	1	0.0757	0.4447	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS695T_SKIN	0	1	0.5204	FALSE	328	800	43	304	0	FALSE	ACH-000799
HS695T_SKIN	MT-ND6--MT-TE	17	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.1608	0.0568	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS695T_SKIN	0.88	1	0.2176	FALSE	499	1288	110	792	0	FALSE	ACH-000799
HS695T_SKIN	TIMM23--RP11-464F9.1	18	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1703	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS695T_SKIN	1	1	0.1703	TRUE	519	3926	326	965	0	FALSE	ACH-000799
HS695T_SKIN	MT-ND4--MT-ND4L	8	33	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1081	0	0.04	1	0.0757	0.3122	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS695T_SKIN	0.04	1	0.3879	FALSE	344	827	44	306	0	FALSE	ACH-000799
HS695T_SKIN	MT-TA--MT-TC	16	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1514	0.0095	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS695T_SKIN	1	1	0.1609	FALSE	462	80	0	856	0	FALSE	ACH-000799
HS695T_SKIN	MT-ND4--MT-ND4L	5	44	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	939	0	0.05	1	0.0473	0.4163	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS695T_SKIN	0.05	1	0.4636	FALSE	344	827	44	306	0	FALSE	ACH-000799
HS695T_SKIN	DENND4A--SYCP2	13	5	DENND4A	16921	chr15:65998429:-	SYCP2	64691	chr20:58456078:-	ONLY_REF_SPLICE	YES	9	43	0.67	0.3	0.123	0.0473	{Klijn_CCL:Skin=1},DENND4A->DENN_domain_containing_4A,chr15:65950384-66084631:-,SYCP2->chr20:58438618-58508710:-,synaptonemal_complex_protein_2	HS695T_SKIN	0.3	0.67	0.1703	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	RAB31--PLIN2	12	6	RAB31	1280	chr18:9708441:+	PLIN2	36516	chr9:19108745:-	ONLY_REF_SPLICE	YES	8	14	0.69	0.56	0.1135	0.0568	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,PLIN2->chr9:19108373-19149288:-,perilipin_2	HS695T_SKIN	0.56	0.69	0.1703	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO2	12	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	41	4	0.25	0.78	0.1135	0.0189	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS695T_SKIN	0.25	0.78	0.1324	FALSE	59	21	0	114	0	FALSE	ACH-000799
HS695T_SKIN	RP11-444D3.1--SOX5	11	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	7	1	0.65	0.1041	0.0189	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS695T_SKIN	0.65	1	0.123	TRUE	477	1352	189	275	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO2	10	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	64	4	0.19	0.79	0.0946	0.0473	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS695T_SKIN	0.19	0.79	0.1419	FALSE	59	21	0	114	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO2	10	5	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	66	4	0.19	0.79	0.0946	0.0473	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS695T_SKIN	0.19	0.79	0.1419	FALSE	59	21	0	114	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO2	10	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	64	6	0.19	0.71	0.0946	0.0473	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS695T_SKIN	0.19	0.71	0.1419	FALSE	59	21	0	114	0	FALSE	ACH-000799
HS695T_SKIN	MT-ND6--MT-TE	8	12	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0757	0.1135	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS695T_SKIN	1	1	0.1892	FALSE	499	1288	110	792	0	FALSE	ACH-000799
HS695T_SKIN	RP11-820L6.1--DHFR	10	0	RP11-820L6.1	10204	chr11:122051044:-	DHFR	17946	chr5:79933828:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0946	0	RP11-820L6.1->chr11:122026130-122293579:-,DHFR->chr5:79922047-79950802:-,dihydrofolate_reductase	HS695T_SKIN	1	1	0.0946	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	RAB31--HAUS6	8	3	RAB31	1280	chr18:9708441:+	HAUS6	24421	chr9:19096767:-	ONLY_REF_SPLICE	YES	8	102	0.58	0.1	0.0757	0.0284	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,HAUS6->HAUS_augmin_like_complex_subunit_6,chr9:19053141-19103117:-	HS695T_SKIN	0.1	0.58	0.1041	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO2	8	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	47	6	0.18	0.62	0.0757	0.0189	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS695T_SKIN	0.18	0.62	0.0946	FALSE	59	21	0	114	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO2	8	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	41	4	0.2	0.71	0.0757	0.0189	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS695T_SKIN	0.2	0.71	0.0946	FALSE	59	21	0	114	0	FALSE	ACH-000799
HS695T_SKIN	IGFBP7--MT-ND4L	8	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0757	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS695T_SKIN	1	1	0.0757	FALSE	1	0	0	30	0	FALSE	ACH-000799
HS695T_SKIN	SEPT4--CALR	8	0	SEPT4	12328	chr17:56599084:-	CALR	20651	chr19:13054566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0757	0	SEPT4->chr17:56597611-56618179:-,septin_4,CALR->calreticulin,chr19:13049392-13055303:+	HS695T_SKIN	1	1	0.0757	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	MT-ND6--MT-TE	5	11	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.84	1	0.0473	0.1041	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS695T_SKIN	0.84	1	0.1514	FALSE	499	1288	110	792	0	FALSE	ACH-000799
HS695T_SKIN	RAB31--PLIN2	6	7	RAB31	2402	chr18:9722860:+	PLIN2	36516	chr9:19108745:-	ONLY_REF_SPLICE	YES	6	14	0.68	0.48	0.0568	0.0662	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,PLIN2->chr9:19108373-19149288:-,perilipin_2	HS695T_SKIN	0.48	0.68	0.123	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO1	7	2	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	9860	17341	0	0	0.0662	0.0189	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS695T_SKIN	0	0	0.0851	FALSE	183	104	9	328	0	FALSE	ACH-000799
HS695T_SKIN	RP11-634B7.4--TRIM58	7	2	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	1	0.9	0.9	0.0662	0.0189	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	HS695T_SKIN	0.9	0.9	0.0851	TRUE	158	633	76	73	0	FALSE	ACH-000799
HS695T_SKIN	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HS695T_SKIN	1	1	0.0662	FALSE	13	9	0	364	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO2	6	3	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	95	11	0.09	0.45	0.0568	0.0284	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS695T_SKIN	0.09	0.45	0.0852	FALSE	59	21	0	114	0	FALSE	ACH-000799
HS695T_SKIN	MT-ND4--MT-ND4L	6	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0568	0.0284	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS695T_SKIN	1	1	0.0852	FALSE	344	821	44	306	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO1	6	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	10223	18844	0	0	0.0568	0.0189	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS695T_SKIN	0	0	0.0757	FALSE	183	104	9	328	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO2	6	1	MT-ATP6	1123	chrM:8649:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	47	6	0.13	0.54	0.0568	0.0095	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS695T_SKIN	0.13	0.54	0.0663	FALSE	59	21	0	114	0	FALSE	ACH-000799
HS695T_SKIN	MT-ND4--MT-ND4L	3	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	26	0	0.38	1	0.0284	0.123	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS695T_SKIN	0.38	1	0.1514	FALSE	344	826	44	306	0	FALSE	ACH-000799
HS695T_SKIN	AP003900.6--AC011718.2	6	0	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0568	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	HS695T_SKIN	1	1	0.0568	TRUE	0	1	0	21	1	FALSE	ACH-000799
HS695T_SKIN	CD74--MT-ATP8	6	0	CD74	2431	chr5:149786762:-	MT-ATP8	10927	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0568	0	CD74->CD74_molecule,Oncogene{Bushman},chr5:149781200-149792492:-,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS695T_SKIN	1	1	0.0568	FALSE	0	0	0	1	0	FALSE	ACH-000799
HS695T_SKIN	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0568	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS695T_SKIN	1	1	0.0568	FALSE	292	1546	117	613	0	FALSE	ACH-000799
HS695T_SKIN	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0568	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS695T_SKIN	1	1	0.0568	TRUE	458	1351	185	561	0	FALSE	ACH-000799
HS695T_SKIN	SEPT4--CALR	6	0	SEPT4	12328	chr17:56599084:-	CALR	20616	chr19:13054531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0568	0	SEPT4->chr17:56597611-56618179:-,septin_4,CALR->calreticulin,chr19:13049392-13055303:+	HS695T_SKIN	1	1	0.0568	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO1	5	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10140	19272	0	0	0.0473	0.0189	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS695T_SKIN	0	0	0.0662	FALSE	183	104	9	328	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO1	5	2	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	10300	16845	0	0	0.0473	0.0189	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS695T_SKIN	0	0	0.0662	FALSE	183	104	9	328	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO1	5	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5332	chrM:6554:+	INCL_NON_REF_SPLICE	YES	10140	19413	0	0	0.0473	0.0189	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS695T_SKIN	0	0	0.0662	FALSE	183	104	9	328	0	FALSE	ACH-000799
HS695T_SKIN	RAB31--PLIN2	4	6	RAB31	2390	chr18:9722848:+	PLIN2	36516	chr9:19108745:-	INCL_NON_REF_SPLICE	YES	6	14	0.62	0.42	0.0378	0.0568	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,PLIN2->chr9:19108373-19149288:-,perilipin_2	HS695T_SKIN	0.42	0.62	0.0946	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO2	4	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	64	4	0.12	0.69	0.0378	0.0473	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS695T_SKIN	0.12	0.69	0.0851	FALSE	59	21	0	114	0	FALSE	ACH-000799
HS695T_SKIN	MT-TA--MT-TC	5	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0.0095	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS695T_SKIN	1	1	0.0568	FALSE	462	80	0	856	0	FALSE	ACH-000799
HS695T_SKIN	RP11-123O10.4--GRIP1	5	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0473	0.0095	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HS695T_SKIN	1	1	0.0568	FALSE	416	2512	207	587	0	FALSE	ACH-000799
HS695T_SKIN	HPCAL1--MT-CO3	5	0	HPCAL1	5340	chr2:10537030:+	MT-CO3	17735	chrM:9278:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	HPCAL1->chr2:10443015-10567743:+,hippocalcin_like_1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HS695T_SKIN	1	1	0.0473	FALSE	0	0	0	5	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO1	3	8	MT-ATP6	1462	chrM:8988:+	MT-CO1	5224	chrM:6446:+	INCL_NON_REF_SPLICE	YES	9028	17520	0	0	0.0284	0.0757	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS695T_SKIN	0	0	0.1041	FALSE	183	104	9	328	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO1	4	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	12273	0	0	1	0.0378	0.0284	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS695T_SKIN	0	1	0.0662	FALSE	182	97	9	327	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO1	4	3	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	11534	17621	0	0	0.0378	0.0284	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS695T_SKIN	0	0	0.0662	FALSE	183	104	9	328	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO1	4	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12273	19252	0	0	0.0378	0.0284	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS695T_SKIN	0	0	0.0662	FALSE	183	104	9	328	0	FALSE	ACH-000799
HS695T_SKIN	RAB31--HAUS6	4	3	RAB31	1280	chr18:9708441:+	HAUS6	23273	chr9:19102669:-	INCL_NON_REF_SPLICE	YES	8	161	0.47	0.04	0.0378	0.0284	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,HAUS6->HAUS_augmin_like_complex_subunit_6,chr9:19053141-19103117:-	HS695T_SKIN	0.04	0.47	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO1	4	2	MT-ATP6	1120	chrM:8646:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	10050	0	0	1	0.0378	0.0189	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS695T_SKIN	0	1	0.0567	FALSE	182	97	9	327	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO1	4	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10074	19252	0	0	0.0378	0.0189	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS695T_SKIN	0	0	0.0567	FALSE	183	104	9	328	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO2	4	2	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	44	6	0.12	0.5	0.0378	0.0189	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS695T_SKIN	0.12	0.5	0.0567	FALSE	59	21	0	114	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO2	4	2	MT-ATP6	1123	chrM:8649:+	MT-CO2	4811	chrM:7715:+	INCL_NON_REF_SPLICE	YES	47	3	0.11	0.67	0.0378	0.0189	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS695T_SKIN	0.11	0.67	0.0567	FALSE	59	21	0	114	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO1	4	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5909	chrM:7131:+	INCL_NON_REF_SPLICE	YES	12273	16144	0	0	0.0378	0.0095	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS695T_SKIN	0	0	0.0473	FALSE	183	104	9	328	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO2	3	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	64	4	0.11	0.67	0.0284	0.0473	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS695T_SKIN	0.11	0.67	0.0757	FALSE	59	21	0	114	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO2	4	1	MT-ATP6	1142	chrM:8668:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	59	7	0.08	0.42	0.0378	0.0095	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS695T_SKIN	0.08	0.42	0.0473	FALSE	59	21	0	114	0	FALSE	ACH-000799
HS695T_SKIN	NRIP1--AF127936.7	4	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.25	1	0.0378	0.0095	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS695T_SKIN	0.25	1	0.0473	FALSE	164	806	69	479	0	FALSE	ACH-000799
HS695T_SKIN	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS695T_SKIN	1	1	0.0378	FALSE	499	1288	110	792	0	FALSE	ACH-000799
HS695T_SKIN	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS695T_SKIN	1	1	0.0378	FALSE	462	80	0	856	0	FALSE	ACH-000799
HS695T_SKIN	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0.0378	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS695T_SKIN	1	1	0.0662	FALSE	407	2205	196	549	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO1	3	3	MT-ATP6	1153	chrM:8679:+	MT-CO1	4732	chrM:5954:+	INCL_NON_REF_SPLICE	YES	11725	0	0	1	0.0284	0.0284	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS695T_SKIN	0	1	0.0568	FALSE	182	97	9	327	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO1	3	2	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	YES	10248	17031	0	0	0.0284	0.0189	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS695T_SKIN	0	0	0.0473	FALSE	183	104	9	328	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO1	3	2	MT-ATP6	1134	chrM:8660:+	MT-CO1	5163	chrM:6385:+	INCL_NON_REF_SPLICE	YES	10297	17351	0	0	0.0284	0.0189	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS695T_SKIN	0	0	0.0473	FALSE	183	104	9	328	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO1	3	1	MT-ATP6	1107	chrM:8633:+	MT-CO1	5880	chrM:7102:+	INCL_NON_REF_SPLICE	YES	10124	17263	0	0	0.0284	0.0095	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS695T_SKIN	0	0	0.0379	FALSE	183	104	9	328	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO2	3	1	MT-ATP6	1076	chrM:8602:+	MT-CO2	5049	chrM:7953:+	INCL_NON_REF_SPLICE	YES	29	6	0.12	0.4	0.0284	0.0095	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS695T_SKIN	0.12	0.4	0.0379	FALSE	59	21	0	114	0	FALSE	ACH-000799
HS695T_SKIN	MT-ATP6--MT-CO2	3	1	MT-ATP6	1072	chrM:8598:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	NO	27	6	0.13	0.4	0.0284	0.0095	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS695T_SKIN	0.13	0.4	0.0379	FALSE	59	21	0	114	0	FALSE	ACH-000799
HS695T_SKIN	MT-TA--MT-TC	3	1	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0.0095	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS695T_SKIN	1	1	0.0379	FALSE	462	80	0	856	0	FALSE	ACH-000799
HS695T_SKIN	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0.0473	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS695T_SKIN	1	1	0.0662	FALSE	467	2173	244	435	0	FALSE	ACH-000799
HS695T_SKIN	HSP90AB1--MT-RNR2	3	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HS695T_SKIN	1	1	0.0284	FALSE	13	9	0	364	0	FALSE	ACH-000799
HS695T_SKIN	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS695T_SKIN	1	1	0.0284	FALSE	344	821	44	306	0	FALSE	ACH-000799
HS695T_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1025	chrM:14649:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS695T_SKIN	1	1	0.0284	FALSE	499	1288	110	792	0	FALSE	ACH-000799
HS695T_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS695T_SKIN	1	1	0.0284	FALSE	499	1288	110	792	0	FALSE	ACH-000799
HS695T_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS695T_SKIN	1	1	0.0284	FALSE	499	1288	110	792	0	FALSE	ACH-000799
HS695T_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS695T_SKIN	1	1	0.0284	FALSE	499	1288	110	792	0	FALSE	ACH-000799
HS695T_SKIN	RPSAP52--HMGA2	3	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HS695T_SKIN	1	1	0.0284	FALSE	0	59	0	125	0	FALSE	ACH-000799
HS695T_SKIN	SAMD5--SASH1	3	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HS695T_SKIN	1	1	0.0284	TRUE	53	396	64	110	0	FALSE	ACH-000799
HS695T_SKIN	RPS6KB1--VMP1	2	3	RPS6KB1	11099	chr17:58009083:+	VMP1	37383	chr17:57895073:+	ONLY_REF_SPLICE	YES	44	168	0.1	0.03	0.0189	0.0284	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HS695T_SKIN	0.03	0.1	0.0473	TRUE	0	1	0	1	1	FALSE	ACH-000799
HS695T_SKIN	AP003900.6--AC011718.2	2	2	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0189	0.0189	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	HS695T_SKIN	0.44	1	0.0378	TRUE	0	1	0	26	1	FALSE	ACH-000799
HS695T_SKIN	CPQ--SDC2	2	1	CPQ	9826	chr8:97892233:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	102	1313	0.03	0	0.0189	0.0095	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	HS695T_SKIN	0	0.03	0.0284	FALSE	2	35	6	7	0	FALSE	ACH-000799
HS695T_SKIN	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0189	0.0095	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS695T_SKIN	0.27	1	0.0284	FALSE	125	705	46	456	0	FALSE	ACH-000799
HS695T_SKIN	PSMC3IP--LAT	2	1	PSMC3IP	3294	chr17:40726214:-	LAT	10007	chr16:28997978:+	ONLY_REF_SPLICE	YES	72	155	0.04	0.02	0.0189	0.0095	PSMC3IP->PSMC3_interacting_protein,chr17:40724333-40729849:-,LAT->chr16:28996147-29002104:+,linker_for_activation_of_T-cells	HS695T_SKIN	0.02	0.04	0.0284	TRUE	0	0	0	1	0	FALSE	ACH-000799
HS695T_SKIN	AP003900.6--AC011718.2	2	0	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	HS695T_SKIN	1	1	0.0189	TRUE	0	1	0	24	1	FALSE	ACH-000799
HS695T_SKIN	AP003900.6--AC011718.2	1	4	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	6	0	0.45	1	0.0095	0.0378	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	HS695T_SKIN	0.45	1	0.0473	TRUE	0	0	0	21	0	FALSE	ACH-000799
HS695T_SKIN	ATL2--HNRNPLL	2	0	ATL2	1143	chr2:38604285:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	HS695T_SKIN	1	1	0.0189	TRUE	1	4	0	6	0	TRUE	ACH-000799
HS695T_SKIN	ATL2--HNRNPLL	2	0	ATL2	1143	chr2:38604285:-	HNRNPLL	32959	chr2:38800569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	HS695T_SKIN	1	1	0.0189	TRUE	0	1	0	2	1	TRUE	ACH-000799
HS695T_SKIN	C17orf76-AS1--PHF14	2	0	C17orf76-AS1	1593	chr17:16342728:+	PHF14	37718	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	C17orf76-AS1->chr17:16342136-16381992:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HS695T_SKIN	1	1	0.0189	TRUE	0	0	0	5	0	TRUE	ACH-000799
HS695T_SKIN	RNF152--RP11-879F14.1	2	0	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	HS695T_SKIN	1	1	0.0189	FALSE	275	472	65	43	0	FALSE	ACH-000799
HS695T_SKIN	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0095	0.0378	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS695T_SKIN	1	1	0.0473	FALSE	515	4851	409	746	0	FALSE	ACH-000799
HS695T_SKIN	TOP1MT--MYH9	2	0	TOP1MT	12572	chr8:144411520:-	MYH9	48939	chr22:36701148:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	TOP1MT->chr8:144386554-144442149:-,topoisomerase_(DNA)_I,_mitochondrial,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	HS695T_SKIN	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	CPQ--SDC2	1	2	CPQ	12030	chr8:98041722:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	NO	173	1313	0.02	0	0.0095	0.0189	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	HS695T_SKIN	0	0.02	0.0284	FALSE	0	2	0	2	0	FALSE	ACH-000799
HS695T_SKIN	FLNA--RPS19	1	2	FLNA	10168	chrX:153589676:-	RPS19	25632	chr19:42364845:+	ONLY_REF_SPLICE	NO	2415	39	0	0.07	0.0095	0.0189	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,FLNA->chrX:153576892-153603006:-,filamin_A,RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19	HS695T_SKIN	0	0.07	0.0284	FALSE	0	0	0	1	0	FALSE	ACH-000799
HS695T_SKIN	GOLGA4--MLH1	1	2	GOLGA4	16939	chr3:37343823:+	MLH1	57056	chr3:37070275:+	ONLY_REF_SPLICE	YES	15	62	0.17	0.05	0.0095	0.0189	YOSHIHARA_TCGA_num_samples[BRCA:1|PRAD:1],GOLGA4->chr3:37284668-37408242:+,golgin_A4,MLH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr3:37034823-37107380:+,mutL_homolog_1	HS695T_SKIN	0.05	0.17	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000799
HS695T_SKIN	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	7	1	0.3	0.0095	0.0189	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS695T_SKIN	0.3	1	0.0284	TRUE	274	363	69	150	0	FALSE	ACH-000799
HS695T_SKIN	CD44--PDHX	1	1	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	1460	59	0	0.03	0.0095	0.0095	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HS695T_SKIN	0	0.03	0.019	FALSE	0	7	0	19	1	FALSE	ACH-000799
HS695T_SKIN	CTSA--EEF1D	1	1	CTSA	5990	chr20:44523772:+	EEF1D	23677	chr8:144669019:-	ONLY_REF_SPLICE	YES	906	190	0	0.01	0.0095	0.0095	CTSA->cathepsin_A,chr20:44518783-44527459:+,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HS695T_SKIN	0	0.01	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000799
HS695T_SKIN	PSPH--GBAS	1	1	PSPH	1467	chr7:56118831:-	GBAS	26359	chr7:56062587:+	ONLY_REF_SPLICE	NO	79	220	0.02	0.01	0.0095	0.0095	LOCAL_INVERSION:-:+:[10870],PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase,GBAS->chr7:56019486-56067874:+,glioblastoma_amplified_sequence	HS695T_SKIN	0.01	0.02	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000799
HS695T_SKIN	RP11-120D5.1--MID1	1	1	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	2	11	0.5	0.15	0.0095	0.0095	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HS695T_SKIN	0.15	0.5	0.019	FALSE	2	31	0	60	0	FALSE	ACH-000799
HS695T_SKIN	VAPB--GNAS	1	1	VAPB	1396	chr20:56964573:+	GNAS	36861	chr20:57470667:+	ONLY_REF_SPLICE	YES	210	2262	0.01	0	0.0095	0.0095	VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HS695T_SKIN	0	0.01	0.019	FALSE	0	3	0	7	1	FALSE	ACH-000799
NCIH1944_LUNG	AP003900.6--AC011718.2	238	20	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	13	0	0.95	1	2.0496	0.1722	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH1944_LUNG	0.95	1	2.2218	TRUE	0	3	0	38	3	FALSE	ACH-000414
NCIH1944_LUNG	TIMM23B--LINC00843	168	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4468	0.267	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1944_LUNG	1	1	1.7138	TRUE	508	994	45	981	0	FALSE	ACH-000414
NCIH1944_LUNG	AP003900.6--AC011718.2	152	68	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	19	0	0.92	1	1.309	0.5856	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH1944_LUNG	0.92	1	1.8946	TRUE	0	5	0	45	5	FALSE	ACH-000414
NCIH1944_LUNG	TIMM23--RP11-464F9.1	102	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	224	8	0.32	0.93	0.8784	0.0172	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1944_LUNG	0.32	0.93	0.8956	TRUE	519	3926	326	965	0	FALSE	ACH-000414
NCIH1944_LUNG	MT-TA--MT-TN	68	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5856	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1944_LUNG	1	1	0.5856	FALSE	369	2501	205	193	0	FALSE	ACH-000414
NCIH1944_LUNG	PLXDC1--TAF13	45	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3875	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH1944_LUNG	1	1	0.3875	TRUE	7	10	0	216	0	FALSE	ACH-000414
NCIH1944_LUNG	FTL--SPP1	44	2	FTL	1162	chr19:49468719:+	SPP1	10488	chr4:88902828:+	INCL_NON_REF_SPLICE	YES	7910	8884	0.01	0.01	0.3789	0.0172	GTEx&tcga_normals:5/3694=0.14%,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	NCIH1944_LUNG	0.01	0.01	0.3961	TRUE	0	0	0	2	0	FALSE	ACH-000414
NCIH1944_LUNG	RP11-6N13.1--CTD-2374C24.1	39	11	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3359	0.0947	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH1944_LUNG	1	1	0.4306	TRUE	5	4	0	46	0	FALSE	ACH-000414
NCIH1944_LUNG	MT-ND6--MT-TE	27	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2325	0.0431	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1944_LUNG	1	1	0.2756	FALSE	499	1288	110	792	0	FALSE	ACH-000414
NCIH1944_LUNG	FTL--RPL39	28	0	FTL	1095	chr19:49468652:+	RPL39	5592	chrX:118925593:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2411	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	NCIH1944_LUNG	1	1	0.2411	TRUE	0	0	0	3	0	TRUE	ACH-000414
NCIH1944_LUNG	FTL--SPP1	24	6	FTL	2439	chr19:49469996:+	SPP1	5689	chr4:88896929:+	INCL_NON_REF_SPLICE	NO	4508	41	0.01	0.42	0.2067	0.0517	GTEx&tcga_normals:5/3694=0.14%,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	NCIH1944_LUNG	0.01	0.42	0.2584	FALSE	0	0	0	1	0	FALSE	ACH-000414
NCIH1944_LUNG	RP11-123O10.4--GRIP1	25	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2153	0.0172	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1944_LUNG	1	1	0.2325	FALSE	416	2512	207	587	0	FALSE	ACH-000414
NCIH1944_LUNG	C15orf57--CBX3	21	17	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	27	48	0.58	0.44	0.1808	0.1464	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1944_LUNG	0.44	0.58	0.3272	TRUE	267	562	48	632	0	FALSE	ACH-000414
NCIH1944_LUNG	C15orf57--CBX3	21	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	25	49	0.56	0.4	0.1808	0.0947	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1944_LUNG	0.4	0.56	0.2755	TRUE	267	562	48	632	0	FALSE	ACH-000414
NCIH1944_LUNG	MT-TA--MT-TC	22	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1895	0.0172	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1944_LUNG	1	1	0.2067	FALSE	462	80	0	856	0	FALSE	ACH-000414
NCIH1944_LUNG	ASS1--MT-CO3	21	1	ASS1	7359	chr9:133339534:+	MT-CO3	21796	chrM:9549:+	INCL_NON_REF_SPLICE	YES	2544	7922	0.01	0	0.1808	0.0086	ASS1->argininosuccinate_synthase_1,chr9:133320316-133376661:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH1944_LUNG	0	0.01	0.1894	FALSE	0	0	0	12	0	FALSE	ACH-000414
NCIH1944_LUNG	MT-TA--MT-TN	12	36	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1033	0.31	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1944_LUNG	1	1	0.4133	FALSE	369	2501	205	193	0	FALSE	ACH-000414
NCIH1944_LUNG	AP003900.6--AC011718.2	16	15	AP003900.6	1122	chr21:11169841:+	AC011718.2	11864	chr22:20653813:-	ONLY_REF_SPLICE	YES	13	3	0.7	0.91	0.1378	0.1292	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH1944_LUNG	0.7	0.91	0.267	TRUE	0	3	0	38	3	FALSE	ACH-000414
NCIH1944_LUNG	MT-TA--MT-TN	6	55	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0.4736	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1944_LUNG	1	1	0.5253	FALSE	369	2501	205	193	0	FALSE	ACH-000414
NCIH1944_LUNG	MT-TA--MT-TN	17	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1464	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1944_LUNG	1	1	0.1464	FALSE	369	2501	205	193	0	FALSE	ACH-000414
NCIH1944_LUNG	PHF3--PTP4A1	15	2	PHF3	1331	chr6:64346055:+	PTP4A1	31225	chr6:64237724:+	ONLY_REF_SPLICE	YES	11	0	0.61	1	0.1292	0.0172	LOCAL_REARRANGEMENT:+:[52233],PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+,PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1	NCIH1944_LUNG	0.61	1	0.1464	TRUE	0	2	0	1	2	TRUE	ACH-000414
NCIH1944_LUNG	AP003900.6--AC011718.2	5	37	AP003900.6	3299	chr21:11174002:+	AC011718.2	11864	chr22:20653813:-	ONLY_REF_SPLICE	YES	19	3	0.69	0.93	0.0431	0.3186	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH1944_LUNG	0.69	0.93	0.3617	TRUE	0	5	0	45	5	FALSE	ACH-000414
NCIH1944_LUNG	AP003900.6--AC011718.2	8	25	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	33	0	0.5	1	0.0689	0.2153	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH1944_LUNG	0.5	1	0.2842	TRUE	0	0	0	21	0	FALSE	ACH-000414
NCIH1944_LUNG	MT-TA--MT-TN	9	21	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0775	0.1808	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1944_LUNG	1	1	0.2583	FALSE	369	2501	205	193	0	FALSE	ACH-000414
NCIH1944_LUNG	MT-TA--MT-TN	5	33	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0.2842	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1944_LUNG	1	1	0.3273	FALSE	369	2501	205	193	0	FALSE	ACH-000414
NCIH1944_LUNG	RBM47--APBB2	10	8	RBM47	3565	chr4:40546439:-	APBB2	37164	chr4:40947090:-	ONLY_REF_SPLICE	YES	64	5	0.22	0.78	0.0861	0.0689	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	NCIH1944_LUNG	0.22	0.78	0.155	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	RBM47--APBB2	10	8	RBM47	3565	chr4:40546439:-	APBB2	37167	chr4:40947087:-	ONLY_REF_SPLICE	YES	64	5	0.22	0.78	0.0861	0.0689	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	NCIH1944_LUNG	0.22	0.78	0.155	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	MT-TA--MT-TN	7	19	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0603	0.1636	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1944_LUNG	1	1	0.2239	FALSE	369	2501	205	193	0	FALSE	ACH-000414
NCIH1944_LUNG	RP11-168O22.1--PCDH15	11	0	RP11-168O22.1	2183	chr10:57335410:-	PCDH15	9774	chr10:56926411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0947	0	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	NCIH1944_LUNG	1	1	0.0947	TRUE	18	36	1	9	0	FALSE	ACH-000414
NCIH1944_LUNG	MT-ND6--MT-TE	9	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0775	0.0344	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1944_LUNG	1	1	0.1119	FALSE	499	1288	110	792	0	FALSE	ACH-000414
NCIH1944_LUNG	RP11-6N13.1--CTD-2374C24.1	7	7	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0603	0.0603	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH1944_LUNG	1	1	0.1206	TRUE	5	12	0	42	0	FALSE	ACH-000414
NCIH1944_LUNG	MT-ND6--MT-TE	6	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0.0861	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1944_LUNG	1	1	0.1378	FALSE	499	1288	110	792	0	FALSE	ACH-000414
NCIH1944_LUNG	MT-TA--MT-TC	8	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0.0172	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1944_LUNG	1	1	0.0861	FALSE	462	80	0	856	0	FALSE	ACH-000414
NCIH1944_LUNG	FTL--S100P	8	1	FTL	1179	chr19:49468736:+	S100P	6419	chr4:6695636:+	INCL_NON_REF_SPLICE	YES	10123	0	0	1	0.0689	0.0086	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,S100P->Oncogene{Bushman},S100_calcium_binding_protein_P,chr4:6694796-6698897:+	NCIH1944_LUNG	0	1	0.0775	FALSE	0	0	0	2	0	FALSE	ACH-000414
NCIH1944_LUNG	FTL--RPL39	8	0	FTL	1116	chr19:49468673:+	RPL39	5614	chrX:118925571:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	NCIH1944_LUNG	1	1	0.0689	TRUE	0	0	0	3	0	TRUE	ACH-000414
NCIH1944_LUNG	FTL--SPP1	8	0	FTL	1141	chr19:49468698:+	SPP1	11373	chr4:88903713:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	GTEx&tcga_normals:5/3694=0.14%,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	NCIH1944_LUNG	1	1	0.0689	TRUE	0	0	0	2	0	TRUE	ACH-000414
NCIH1944_LUNG	NRIP1--AF127936.7	8	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0689	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1944_LUNG	1	1	0.0689	FALSE	292	1546	117	613	0	FALSE	ACH-000414
NCIH1944_LUNG	MT-TA--MT-TN	7	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0603	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1944_LUNG	1	1	0.0603	FALSE	369	2501	205	193	0	FALSE	ACH-000414
NCIH1944_LUNG	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1944_LUNG	1	1	0.0517	TRUE	458	1351	185	561	0	FALSE	ACH-000414
NCIH1944_LUNG	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1944_LUNG	1	1	0.0517	TRUE	465	1949	224	605	0	FALSE	ACH-000414
NCIH1944_LUNG	AP003900.6--AC011718.2	1	19	AP003900.6	2187	chr21:11172043:+	AC011718.2	11864	chr22:20653813:-	ONLY_REF_SPLICE	NO	33	3	0.38	0.87	0.0086	0.1636	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH1944_LUNG	0.38	0.87	0.1722	TRUE	0	0	0	21	0	FALSE	ACH-000414
NCIH1944_LUNG	HPS5--TLN2	5	1	HPS5	1122	chr11:18343624:-	TLN2	35965	chr15:62939474:+	ONLY_REF_SPLICE	YES	3	3	0.67	0.67	0.0431	0.0086	HPS5->HPS5,_biogenesis_of_lysosomal_organelles_complex_2_subunit_2,chr11:18300223-18343745:-,TLN2->chr15:62682725-63136830:+,talin_2	NCIH1944_LUNG	0.67	0.67	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	RP11-96H19.1--RP11-446N19.1	5	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0431	0.0086	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1944_LUNG	1	1	0.0517	FALSE	515	4851	409	746	0	FALSE	ACH-000414
NCIH1944_LUNG	HPS5--TLN2	4	4	HPS5	1253	chr11:18343493:-	TLN2	35965	chr15:62939474:+	ONLY_REF_SPLICE	YES	31	3	0.21	0.73	0.0344	0.0344	HPS5->HPS5,_biogenesis_of_lysosomal_organelles_complex_2_subunit_2,chr11:18300223-18343745:-,TLN2->chr15:62682725-63136830:+,talin_2	NCIH1944_LUNG	0.21	0.73	0.0688	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	MT-TA--MT-TN	5	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1944_LUNG	1	1	0.0431	FALSE	369	2501	205	193	0	FALSE	ACH-000414
NCIH1944_LUNG	HPS5--TLN2	3	5	HPS5	2410	chr11:18339298:-	TLN2	35965	chr15:62939474:+	ONLY_REF_SPLICE	YES	28	3	0.22	0.73	0.0258	0.0431	HPS5->HPS5,_biogenesis_of_lysosomal_organelles_complex_2_subunit_2,chr11:18300223-18343745:-,TLN2->chr15:62682725-63136830:+,talin_2	NCIH1944_LUNG	0.22	0.73	0.0689	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	NRIP1--AF127936.7	4	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0344	0.0086	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1944_LUNG	0.26	1	0.043	FALSE	125	705	46	456	0	FALSE	ACH-000414
NCIH1944_LUNG	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0.0431	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1944_LUNG	1	1	0.0689	FALSE	407	2205	196	549	0	FALSE	ACH-000414
NCIH1944_LUNG	FTL--RPL39	4	0	FTL	1108	chr19:49468665:+	RPL39	5606	chrX:118925579:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	NCIH1944_LUNG	1	1	0.0344	TRUE	0	0	0	3	0	TRUE	ACH-000414
NCIH1944_LUNG	POLE--FUS	4	0	POLE	1112	chr12:133263840:-	FUS	48055	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0344	0	POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH1944_LUNG	1	1	0.0344	TRUE	0	0	0	2	0	TRUE	ACH-000414
NCIH1944_LUNG	PHF3--PTP4A1	3	3	PHF3	1331	chr6:64346055:+	PTP4A1	30146	chr6:64231653:+	INCL_NON_REF_SPLICE	YES	11	0	0.35	1	0.0258	0.0258	LOCAL_REARRANGEMENT:+:[52233],PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+,PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1	NCIH1944_LUNG	0.35	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	MT-TA--MT-TC	3	2	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0.0172	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1944_LUNG	1	1	0.043	FALSE	462	80	0	856	0	FALSE	ACH-000414
NCIH1944_LUNG	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0172	0.0431	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1944_LUNG	1	1	0.0603	FALSE	192	492	57	212	0	FALSE	ACH-000414
NCIH1944_LUNG	CLCN4--WWC3	3	0	CLCN4	1117	chrX:10125140:+	WWC3	39532	chrX:10096028:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	LOCAL_REARRANGEMENT:+:[12506],CLCN4->chloride_voltage-gated_channel_4,chrX:10125024-10205700:+,WWC3->WWC_family_member_3,chrX:9983602-10112518:+	NCIH1944_LUNG	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	FTL--S100P	3	0	FTL	1153	chr19:49468710:+	S100P	6393	chr4:6695610:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,S100P->Oncogene{Bushman},S100_calcium_binding_protein_P,chr4:6694796-6698897:+	NCIH1944_LUNG	1	1	0.0258	TRUE	0	0	0	2	0	TRUE	ACH-000414
NCIH1944_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1944_LUNG	1	1	0.0258	FALSE	499	1288	110	792	0	FALSE	ACH-000414
NCIH1944_LUNG	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH1944_LUNG	1	1	0.0258	TRUE	22	156	2	142	0	FALSE	ACH-000414
NCIH1944_LUNG	TIMM23B--LINC00843	3	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1944_LUNG	1	1	0.0258	TRUE	62	24	1	171	0	FALSE	ACH-000414
NCIH1944_LUNG	RP11-168O22.1--PCDH15	2	2	RP11-168O22.1	3305	chr10:57125852:-	PCDH15	9774	chr10:56926411:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0172	0.0172	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	NCIH1944_LUNG	0.67	1	0.0344	TRUE	14	7	0	7	0	FALSE	ACH-000414
NCIH1944_LUNG	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	13	0	0.19	1	0.0172	0.0086	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1944_LUNG	0.19	1	0.0258	FALSE	164	806	69	479	0	FALSE	ACH-000414
NCIH1944_LUNG	PHF3--PTP4A1	2	1	PHF3	1331	chr6:64346055:+	PTP4A1	35093	chr6:64286341:+	ONLY_REF_SPLICE	YES	11	1091	0.21	0	0.0172	0.0086	LOCAL_REARRANGEMENT:+:[52233],PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+,PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1	NCIH1944_LUNG	0	0.21	0.0258	FALSE	1	1	0	1	1	FALSE	ACH-000414
NCIH1944_LUNG	AC002066.1--AC073130.1	2	0	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	NCIH1944_LUNG	1	1	0.0172	FALSE	0	3	0	33	0	FALSE	ACH-000414
NCIH1944_LUNG	ADAM9--ASPH	2	0	ADAM9	1292	chr8:38854679:+	ASPH	35141	chr8:62596747:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	NCIH1944_LUNG	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	ATP5B--RNF41	2	0	ATP5B	1178	chr12:57039621:-	RNF41	15183	chr12:56604352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-,RNF41->chr12:56598285-56615717:-,ring_finger_protein_41	NCIH1944_LUNG	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	ATRX--PGK1	2	0	ATRX	1235	chrX:77041468:-	PGK1	52000	chrX:77365364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1	NCIH1944_LUNG	1	1	0.0172	TRUE	0	1	0	9	0	TRUE	ACH-000414
NCIH1944_LUNG	CLTC--RPS6KB1	2	0	CLTC	1316	chr17:57697534:+	RPS6KB1	41184	chr17:57987923:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	NCIH1944_LUNG	1	1	0.0172	TRUE	0	1	0	5	0	TRUE	ACH-000414
NCIH1944_LUNG	POLE--PGAM5	2	0	POLE	1112	chr12:133263840:-	PGAM5	42986	chr12:133291444:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	LOCAL_INVERSION:-:+:[23454],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	NCIH1944_LUNG	1	1	0.0172	TRUE	0	0	0	2	0	TRUE	ACH-000414
NCIH1944_LUNG	RP11-114H21.2--CTB-1I21.1	1	4	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	NO	5	0	0.5	1	0.0086	0.0344	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	NCIH1944_LUNG	0.5	1	0.043	TRUE	0	2	0	12	2	TRUE	ACH-000414
NCIH1944_LUNG	RPS12--RNF149	2	0	RPS12	3385	chr6:133138200:+	RNF149	18657	chr2:101888206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	RPS12->chr6:133135580-133138703:+,ribosomal_protein_S12,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	NCIH1944_LUNG	1	1	0.0172	TRUE	0	0	0	3	0	TRUE	ACH-000414
NCIH1944_LUNG	RBM47--APBB2	1	3	RBM47	2480	chr4:40631413:-	APBB2	37164	chr4:40947090:-	ONLY_REF_SPLICE	YES	35	5	0.1	0.44	0.0086	0.0258	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	NCIH1944_LUNG	0.1	0.44	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000414
NCIH1944_LUNG	CT49--SDHA	1	1	CT49	1196	chr5:12575164:+	SDHA	26744	chr5:251107:+	ONLY_REF_SPLICE	YES	78	315	0.03	0.01	0.0086	0.0086	CT49->chr5:12574969-12804475:+,SDHA->ArcherDX_panel,FoundationOne_panel,chr5:218356-256815:+,succinate_dehydrogenase_complex_flavoprotein_subunit_A	NCIH1944_LUNG	0.01	0.03	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000414
NCIH1944_LUNG	CTD-2033A16.3--NQO1	1	1	CTD-2033A16.3	1163	chr16:69761078:+	NQO1	7112	chr16:69752437:-	ONLY_REF_SPLICE	YES	2	2122	0.5	0	0.0086	0.0086	LOCAL_INVERSION:+:-:[62],CTD-2033A16.3->chr16:69760916-69776466:+,NQO1->NAD(P)H_quinone_dehydrogenase_1,Oncogene{Bushman},chr16:69740899-69760854:-	NCIH1944_LUNG	0	0.5	0.0172	FALSE	0	0	0	3	0	FALSE	ACH-000414
NCIH1944_LUNG	DNTTIP2--GCLM	1	1	DNTTIP2	5274	chr1:94341201:-	GCLM	21171	chr1:94360284:-	ONLY_REF_SPLICE	YES	317	738	0.01	0	0.0086	0.0086	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[5287],DNTTIP2->chr1:94333373-94345474:-,deoxynucleotidyltransferase_terminal_interacting_protein_2,GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit	NCIH1944_LUNG	0	0.01	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000414
NCIH1944_LUNG	GCLC--TINAG	1	1	GCLC	1085	chr6:53481684:-	TINAG	32887	chr6:54214514:+	ONLY_REF_SPLICE	YES	39	17	0.05	0.11	0.0086	0.0086	GCLC->chr6:53362139-53481768:-,glutamate-cysteine_ligase_catalytic_subunit,TINAG->chr6:54172657-54254950:+,tubulointerstitial_nephritis_antigen	NCIH1944_LUNG	0.05	0.11	0.0172	TRUE	0	0	0	1	0	FALSE	ACH-000414
NCIH1944_LUNG	HOXA-AS2--SKAP2	1	1	HOXA-AS2	9331	chr7:27163257:+	SKAP2	24855	chr7:26883756:-	ONLY_REF_SPLICE	YES	6	73	0.25	0.03	0.0086	0.0086	HOXA-AS2->HOXA_cluster_antisense_RNA_2,chr7:27147396-27173921:+,SKAP2->chr7:26706681-27034858:-,src_kinase_associated_phosphoprotein_2	NCIH1944_LUNG	0.03	0.25	0.0172	TRUE	0	0	0	1	0	FALSE	ACH-000414
NCIH1944_LUNG	RP11-168O22.1--PCDH15	1	1	RP11-168O22.1	3305	chr10:57125852:-	PCDH15	10850	chr10:56657260:-	ONLY_REF_SPLICE	NO	2	0	0.5	1	0.0086	0.0086	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	NCIH1944_LUNG	0.5	1	0.0172	TRUE	0	0	0	1	0	FALSE	ACH-000414
NCIH1944_LUNG	TIMM23--RP11-464F9.1	1	1	TIMM23	5841	chr10:51610393:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	309	8	0.01	0.2	0.0086	0.0086	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1944_LUNG	0.01	0.2	0.0172	FALSE	1	12	0	11	0	FALSE	ACH-000414
KPL1_BREAST	BCAS4--BCAS3	2139	1312	BCAS4	1280	chr20:49411710:+	BCAS3	58366	chr17:59445688:+	ONLY_REF_SPLICE	YES	128	98	0.96	0.97	27.65	16.9597	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.96	0.97	44.6097	TRUE	0	1	1	3	0	TRUE	ACH-000028
KPL1_BREAST	ARFGEF2--SULF2	943	125	ARFGEF2	1121	chr20:47538547:+	SULF2	47936	chr20:46365686:-	ONLY_REF_SPLICE	YES	12	622	0.99	0.63	12.1898	1.6158	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Breast=1},ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	KPL1_BREAST	0.63	0.99	13.8056	TRUE	0	0	1	2	0	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	493	210	RPS6KB1	7326	chr17:57992064:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	738	1293	0.49	0.35	6.3728	2.7146	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.35	0.49	9.0874	TRUE	0	4	1	7	3	TRUE	ACH-000028
KPL1_BREAST	BCAS4--BCAS3	95	1346	BCAS4	1280	chr20:49411710:+	BCAS3	54817	chr17:59430949:+	ONLY_REF_SPLICE	YES	128	63	0.92	0.96	1.228	17.3992	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.92	0.96	18.6272	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	BCAS4--BCAS3	9	1315	BCAS4	1280	chr20:49411710:+	BCAS3	55591	chr17:59431723:+	ONLY_REF_SPLICE	YES	128	97	0.91	0.93	0.1163	16.9985	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.91	0.93	17.1148	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	BCAS4--BCAS3	4	1314	BCAS4	1280	chr20:49411710:+	BCAS3	58346	chr17:59445668:+	INCL_NON_REF_SPLICE	YES	128	107	0.91	0.92	0.0517	16.9855	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.91	0.92	17.0372	TRUE	0	1	1	3	0	TRUE	ACH-000028
KPL1_BREAST	BCAS4--BCAS3	1	1314	BCAS4	1280	chr20:49411710:+	BCAS3	56732	chr17:59434210:+	ONLY_REF_SPLICE	YES	128	101	0.91	0.93	0.0129	16.9855	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.91	0.93	16.9984	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	BCAS4--BCAS3	1	1314	BCAS4	1280	chr20:49411710:+	BCAS3	57870	chr17:59445192:+	ONLY_REF_SPLICE	YES	128	103	0.91	0.93	0.0129	16.9855	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.91	0.93	16.9984	TRUE	0	1	1	3	0	TRUE	ACH-000028
KPL1_BREAST	ATP1A1--ZFP64	242	87	ATP1A1	16095	chr1:116939356:+	ZFP64	48550	chr20:50668671:-	ONLY_REF_SPLICE	YES	1024	0	0.24	1	3.1282	1.1246	ATP1A1->ATPase_Na+/K+_transporting_subunit_alpha_1,chr1:116915290-116952883:+,ZFP64->Oncogene{Bushman},ZFP64_zinc_finger_protein,chr20:50668202-50820847:-	KPL1_BREAST	0.24	1	4.2528	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	CEP170B--INF2	170	6	CEP170B	1234	chr14:105331850:+	INF2	22637	chr14:105167694:+	ONLY_REF_SPLICE	YES	2	46	0.99	0.79	2.1975	0.0776	CEP170B->centrosomal_protein_170B,chr14:105331617-105363107:+,INF2->chr14:105155943-105185942:+,inverted_formin,_FH2_and_WH2_domain_containing	KPL1_BREAST	0.79	0.99	2.2751	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	PRG4--HMCN1	153	68	PRG4	1679	chr1:186266083:+	HMCN1	107004	chr1:186105800:+	ONLY_REF_SPLICE	YES	0	29	1	0.88	1.9778	0.879	PRG4->Oncogene{Bushman},chr1:186265405-186283694:+,proteoglycan_4,HMCN1->chr1:185703683-186160085:+,hemicentin_1	KPL1_BREAST	0.88	1	2.8568	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	113	100	RPS6KB1	4306	chr17:57987972:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	836	1193	0.2	0.15	1.4607	1.2927	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.15	0.2	2.7534	TRUE	0	2	1	6	1	TRUE	ACH-000028
KPL1_BREAST	TANC2--CA4	129	25	TANC2	2143	chr17:61151375:+	CA4	52881	chr17:58232675:+	ONLY_REF_SPLICE	YES	33	0	0.82	1	1.6675	0.3232	{Klijn_CCL:Breast=1},TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,CA4->carbonic_anhydrase_4,chr17:58227297-58248260:+	KPL1_BREAST	0.82	1	1.9907	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	BCAS4--BCAS3	26	384	BCAS4	1280	chr20:49411710:+	BCAS3	66978	chr17:59469338:+	ONLY_REF_SPLICE	YES	128	825	0.76	0.33	0.3361	4.9638	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.33	0.76	5.2999	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	GCN1L1--MSI1	111	22	GCN1L1	2134	chr12:120628101:-	MSI1	58313	chr12:120785317:-	ONLY_REF_SPLICE	YES	95	7	0.58	0.95	1.4349	0.2844	{Klijn_CCL:Breast=1},GCN1L1->chr12:120565007-120632513:-,MSI1->chr12:120779133-120806983:-,musashi_RNA_binding_protein_1	KPL1_BREAST	0.58	0.95	1.7193	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	SMARCA4--CARM1	105	34	SMARCA4	9164	chr19:11097269:+	CARM1	48111	chr19:11015627:+	ONLY_REF_SPLICE	YES	117	56	0.54	0.71	1.3573	0.4395	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[38145],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	KPL1_BREAST	0.54	0.71	1.7968	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	BCAS4--BCAS3	1	448	BCAS4	1280	chr20:49411710:+	BCAS3	62210	chr17:59457867:+	ONLY_REF_SPLICE	YES	128	884	0.78	0.34	0.0129	5.7911	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.34	0.78	5.804	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	AC099850.1--VMP1	100	39	AC099850.1	1994	chr17:57184952:+	VMP1	21543	chr17:57915656:+	ONLY_REF_SPLICE	YES	56	1193	0.71	0.1	1.2927	0.5041	AC099850.1->chr17:57183959-57195628:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.1	0.71	1.7968	TRUE	0	1	1	2	1	TRUE	ACH-000028
KPL1_BREAST	PAPOLA--AK7	99	24	PAPOLA	2168	chr14:96968937:+	AK7	40553	chr14:96904172:+	ONLY_REF_SPLICE	YES	154	3	0.44	0.98	1.2797	0.3102	LOCAL_REARRANGEMENT:+:[12006],PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	KPL1_BREAST	0.44	0.98	1.5899	TRUE	0	0	0	3	0	TRUE	ACH-000028
KPL1_BREAST	BCAS4--BCAS3	1	401	BCAS4	1280	chr20:49411710:+	BCAS3	63619	chr17:59465979:+	ONLY_REF_SPLICE	YES	128	884	0.76	0.31	0.0129	5.1836	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	0.31	0.76	5.1965	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	TXLNG--SYAP1	83	42	TXLNG	1163	chrX:16804712:+	SYAP1	18729	chrX:16753350:+	ONLY_REF_SPLICE	YES	13	224	0.91	0.36	1.0729	0.5429	LOCAL_REARRANGEMENT:+:[21091],TXLNG->chrX:16804550-16862642:+,taxilin_gamma,SYAP1->chrX:16737755-16783459:+,synapse_associated_protein_1	KPL1_BREAST	0.36	0.91	1.6158	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--DIAPH3	84	36	RPS6KB1	9551	chr17:58007535:+	DIAPH3	56314	chr13:60240980:-	ONLY_REF_SPLICE	YES	570	24	0.17	0.83	1.0858	0.4654	RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3	KPL1_BREAST	0.17	0.83	1.5512	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	PTPLB--MYLK	78	22	PTPLB	2902	chr3:123301059:-	MYLK	22687	chr3:123512691:-	ONLY_REF_SPLICE	YES	135	0	0.43	1	1.0083	0.2844	LOCAL_REARRANGEMENT:-:[24864],PTPLB->chr3:123209667-123304032:-,MYLK->chr3:123328896-123603178:-,myosin_light_chain_kinase	KPL1_BREAST	0.43	1	1.2927	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	TIMM23B--LINC00843	77	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.9953	0.168	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KPL1_BREAST	0.98	1	1.1633	TRUE	508	994	45	981	0	FALSE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	14	253	RPS6KB1	9551	chr17:58007535:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	570	1193	0.32	0.18	0.181	3.2704	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.18	0.32	3.4514	TRUE	0	2	0	1	1	TRUE	ACH-000028
KPL1_BREAST	MYH9--EIF3D	66	29	MYH9	1212	chr22:36783852:-	EIF3D	47062	chr22:36922178:-	ONLY_REF_SPLICE	YES	274	39	0.26	0.71	0.8532	0.3749	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D	KPL1_BREAST	0.26	0.71	1.2281	TRUE	0	1	0	2	1	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--CLTC	65	25	RPS6KB1	7326	chr17:57992064:+	CLTC	55100	chr17:57767997:+	ONLY_REF_SPLICE	YES	738	1217	0.11	0.07	0.8402	0.3232	RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain	KPL1_BREAST	0.07	0.11	1.1634	TRUE	0	0	0	1	0	FALSE	ACH-000028
KPL1_BREAST	POP1--MATN2	70	1	POP1	1094	chr8:99129618:+	MATN2	42063	chr8:99042690:+	ONLY_REF_SPLICE	YES	0	26	1	0.73	0.9049	0.0129	LOCAL_REARRANGEMENT:+:[80581],POP1->POP1_homolog,_ribonuclease_P/MRP_subunit,chr8:99129525-99172062:+,MATN2->chr8:98881068-99048944:+,matrilin_2	KPL1_BREAST	0.73	1	0.9178	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	6	253	RPS6KB1	11099	chr17:58009083:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	639	1193	0.29	0.18	0.0776	3.2704	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.18	0.29	3.348	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	ATP1A1--ZFP64	44	87	ATP1A1	16095	chr1:116939356:+	ZFP64	48546	chr20:50668675:-	INCL_NON_REF_SPLICE	YES	1024	0	0.11	1	0.5688	1.1246	ATP1A1->ATPase_Na+/K+_transporting_subunit_alpha_1,chr1:116915290-116952883:+,ZFP64->Oncogene{Bushman},ZFP64_zinc_finger_protein,chr20:50668202-50820847:-	KPL1_BREAST	0.11	1	1.6934	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	1	253	RPS6KB1	11099	chr17:58009083:+	VMP1	38445	chr17:57911373:+	ONLY_REF_SPLICE	YES	639	485	0.28	0.34	0.0129	3.2704	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.28	0.34	3.2833	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	1	246	RPS6KB1	7326	chr17:57992064:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	NO	738	1193	0.25	0.17	0.0129	3.1799	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.17	0.25	3.1928	TRUE	0	8	0	9	5	TRUE	ACH-000028
KPL1_BREAST	MYO9B--FCHO1	52	36	MYO9B	2996	chr19:17213367:+	FCHO1	54568	chr19:17881234:+	ONLY_REF_SPLICE	YES	23	1	0.79	0.99	0.6722	0.4654	{Klijn_CCL:Breast=1},MYO9B->chr19:17186591-17325346:+,myosin_IXB,FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+	KPL1_BREAST	0.79	0.99	1.1376	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ATXN7L3--FAM171A2	57	10	ATXN7L3	3094	chr17:42275388:-	FAM171A2	15777	chr17:42433956:-	ONLY_REF_SPLICE	YES	20	18	0.77	0.79	0.7368	0.1293	ATXN7L3->ataxin_7_like_3,chr17:42269173-42277481:-,FAM171A2->chr17:42430583-42441243:-,family_with_sequence_similarity_171_member_A2	KPL1_BREAST	0.77	0.79	0.8661	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	MYO6--SENP6	51	25	MYO6	1232	chr6:76459140:+	SENP6	64441	chr6:76388299:+	ONLY_REF_SPLICE	YES	132	43	0.37	0.64	0.6593	0.3232	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[30912],MYO6->chr6:76458909-76629254:+,myosin_VI,SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+	KPL1_BREAST	0.37	0.64	0.9825	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	DEPDC1B--ELOVL7	48	28	DEPDC1B	9902	chr5:59934577:-	ELOVL7	32689	chr5:60053472:-	ONLY_REF_SPLICE	YES	32	11	0.7	0.87	0.6205	0.3619	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[51601],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,ELOVL7->ELOVL_fatty_acid_elongase_7,chr5:60047618-60140216:-	KPL1_BREAST	0.7	0.87	0.9824	TRUE	0	0	1	2	0	TRUE	ACH-000028
KPL1_BREAST	ARFGEF2--SULF2	20	125	ARFGEF2	1125	chr20:47538551:+	SULF2	47936	chr20:46365686:-	INCL_NON_REF_SPLICE	YES	18	622	0.89	0.19	0.2585	1.6158	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Breast=1},ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	KPL1_BREAST	0.19	0.89	1.8743	TRUE	0	0	1	2	0	TRUE	ACH-000028
KPL1_BREAST	ZNF654--HMGB2	47	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6075	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KPL1_BREAST	1	1	0.6075	TRUE	0	0	0	518	0	FALSE	ACH-000028
KPL1_BREAST	TIMM23--RP11-464F9.1	46	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	192	6	0.2	0.89	0.5946	0.0129	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KPL1_BREAST	0.2	0.89	0.6075	TRUE	519	3926	326	965	0	FALSE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	1	180	RPS6KB1	5427	chr17:57990165:+	VMP1	34053	chr17:57851115:+	ONLY_REF_SPLICE	NO	868	478	0.17	0.27	0.0129	2.3268	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.17	0.27	2.3397	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RP11-680G10.1--GSE1	42	13	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	69	1	0.44	0.5429	0.168	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KPL1_BREAST	0.44	1	0.7109	TRUE	465	1949	224	605	0	FALSE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	1	177	RPS6KB1	5427	chr17:57990165:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	868	1193	0.17	0.13	0.0129	2.288	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.13	0.17	2.3009	TRUE	0	5	0	6	5	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	9	141	RPS6KB1	5427	chr17:57990165:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	868	1293	0.15	0.1	0.1163	1.8226	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.1	0.15	1.9389	TRUE	0	1	0	3	0	TRUE	ACH-000028
KPL1_BREAST	SMARCC1--EMCN	43	3	SMARCC1	5204	chr3:47779519:-	EMCN	43214	chr4:101491482:-	ONLY_REF_SPLICE	YES	42	0	0.52	1	0.5558	0.0388	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,EMCN->chr4:101316498-101801283:-,endomucin	KPL1_BREAST	0.52	1	0.5946	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ESR1--CCDC170	35	33	ESR1	3373	chr6:152023140:+	CCDC170	38747	chr6:151894309:+	ONLY_REF_SPLICE	YES	4	11	0.94	0.86	0.4524	0.4266	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	KPL1_BREAST	0.86	0.94	0.879	TRUE	0	1	0	3	1	TRUE	ACH-000028
KPL1_BREAST	RSBN1--AP4B1-AS1	32	20	RSBN1	1767	chr1:114354332:-	AP4B1-AS1	20221	chr1:114442494:+	ONLY_REF_SPLICE	YES	27	13	0.66	0.8	0.4137	0.2585	LOCAL_INVERSION:-:+:[44159],RSBN1->chr1:114304454-114355098:-,round_spermatid_basic_protein_1,AP4B1-AS1->AP4B1_antisense_RNA_1,chr1:114399257-114443859:+	KPL1_BREAST	0.66	0.8	0.6722	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	AHCYL1--RAD51C	32	12	AHCYL1	1487	chr1:110527794:+	RAD51C	32162	chr17:56811479:+	ONLY_REF_SPLICE	YES	131	139	0.25	0.24	0.4137	0.1551	{Klijn_CCL:Breast=1},AHCYL1->adenosylhomocysteinase_like_1,chr1:110527308-110566357:+,RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+	KPL1_BREAST	0.24	0.25	0.5688	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	BCAS3--ATXN7	32	6	BCAS3	9960	chr17:58824640:+	ATXN7	75101	chr3:63981181:+	ONLY_REF_SPLICE	YES	23	53	0.62	0.42	0.4137	0.0776	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,ATXN7->ataxin_7,chr3:63850233-63989138:+	KPL1_BREAST	0.42	0.62	0.4913	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	MT-ND6--MT-TE	31	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4007	0.0517	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPL1_BREAST	1	1	0.4524	FALSE	499	1288	110	792	0	FALSE	ACH-000028
KPL1_BREAST	AC099850.1--VMP1	21	40	AC099850.1	1994	chr17:57184952:+	VMP1	19837	chr17:57911373:+	ONLY_REF_SPLICE	YES	56	485	0.52	0.11	0.2715	0.5171	AC099850.1->chr17:57183959-57195628:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.11	0.52	0.7886	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	TAF4--BRIP1	28	11	TAF4	2360	chr20:60639507:-	BRIP1	33209	chr17:59926617:-	ONLY_REF_SPLICE	YES	35	217	0.53	0.15	0.3619	0.1422	{Klijn_CCL:Breast=1},TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-	KPL1_BREAST	0.15	0.53	0.5041	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	OR51S1--TP53I11	30	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3878	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	KPL1_BREAST	1	1	0.3878	TRUE	402	216	10	229	0	FALSE	ACH-000028
KPL1_BREAST	BCAS4--ZMYND8	26	8	BCAS4	1280	chr20:49411710:+	ZMYND8	41369	chr20:45850125:-	ONLY_REF_SPLICE	YES	128	128	0.21	0.21	0.3361	0.1034	BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8	KPL1_BREAST	0.21	0.21	0.4395	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	SULF2--PRICKLE2	26	4	SULF2	2274	chr20:46414087:-	PRICKLE2	40949	chr3:64085601:-	ONLY_REF_SPLICE	YES	110	5	0.21	0.86	0.3361	0.0517	SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	KPL1_BREAST	0.21	0.86	0.3878	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ARFGEF2--SULF2	5	86	ARFGEF2	1111	chr20:47538537:+	SULF2	47936	chr20:46365686:-	INCL_NON_REF_SPLICE	YES	10	622	0.9	0.13	0.0646	1.1117	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Breast=1},ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	KPL1_BREAST	0.13	0.9	1.1763	TRUE	0	0	1	2	0	TRUE	ACH-000028
KPL1_BREAST	PPFIA1--ANO1	23	5	PPFIA1	16154	chr11:70185412:+	ANO1	71375	chr11:70016993:+	ONLY_REF_SPLICE	YES	107	1	0.21	0.97	0.2973	0.0646	LOCAL_REARRANGEMENT:+:[81172],PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,ANO1->anoctamin_1,chr11:69924408-70035634:+	KPL1_BREAST	0.21	0.97	0.3619	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	GATAD2B--NUP210L	21	12	GATAD2B	1243	chr1:153895209:-	NUP210L	47435	chr1:154000073:-	ONLY_REF_SPLICE	YES	7	12	0.82	0.73	0.2715	0.1551	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	KPL1_BREAST	0.73	0.82	0.4266	TRUE	0	1	0	2	1	TRUE	ACH-000028
KPL1_BREAST	AC099850.1--VMP1	16	24	AC099850.1	1909	chr17:57184867:+	VMP1	21543	chr17:57915656:+	INCL_NON_REF_SPLICE	YES	62	1193	0.39	0.03	0.2068	0.3102	AC099850.1->chr17:57183959-57195628:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.03	0.39	0.517	TRUE	0	1	1	2	1	FALSE	ACH-000028
KPL1_BREAST	GCN1L1--MSI1	16	23	GCN1L1	2134	chr12:120628101:-	MSI1	57256	chr12:120789203:-	ONLY_REF_SPLICE	YES	95	6	0.29	0.87	0.2068	0.2973	{Klijn_CCL:Breast=1},GCN1L1->chr12:120565007-120632513:-,MSI1->chr12:120779133-120806983:-,musashi_RNA_binding_protein_1	KPL1_BREAST	0.29	0.87	0.5041	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	TRIM37--DHX40P1	19	11	TRIM37	15041	chr17:57139928:-	DHX40P1	43517	chr17:58054131:-	ONLY_REF_SPLICE	YES	609	59	0.05	0.34	0.2456	0.1422	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,DHX40P1->DEAH-box_helicase_40_pseudogene_1,chr17:58053370-58079745:-	KPL1_BREAST	0.05	0.34	0.3878	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RP11-680G10.1--GSE1	16	15	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	25	1	0.55	0.2068	0.1939	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KPL1_BREAST	0.55	1	0.4007	TRUE	458	1351	185	561	0	FALSE	ACH-000028
KPL1_BREAST	RP11-15E18.1--LPPR5	17	10	RP11-15E18.1	1209	chr17:58603862:+	LPPR5	8643	chr1:99470179:-	INCL_NON_REF_SPLICE	YES	10	0	0.73	1	0.2198	0.1293	RP11-15E18.1->chr17:58603654-58628159:+,LPPR5->chr1:99355806-99470588:-	KPL1_BREAST	0.73	1	0.3491	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	RP11-123O10.4--GRIP1	18	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2327	0.0259	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KPL1_BREAST	1	1	0.2586	FALSE	416	2512	207	587	0	FALSE	ACH-000028
KPL1_BREAST	RP11-96H19.1--RP11-446N19.1	17	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.96	0.96	0.2198	0.0776	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KPL1_BREAST	0.96	0.96	0.2974	FALSE	515	4851	409	746	0	FALSE	ACH-000028
KPL1_BREAST	ABCA5--PPP4R1L	15	11	ABCA5	7553	chr17:67309233:-	PPP4R1L	52141	chr20:56847931:-	ONLY_REF_SPLICE	YES	15	33	0.63	0.44	0.1939	0.1422	ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-,PPP4R1L->chr20:56806188-56884495:-,protein_phosphatase_4_regulatory_subunit_1_like_(pseudogene)	KPL1_BREAST	0.44	0.63	0.3361	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ADAMTS19--SLC27A6	16	6	ADAMTS19	1218	chr5:128796175:+	SLC27A6	44345	chr5:128364038:+	ONLY_REF_SPLICE	YES	3	0	0.88	1	0.2068	0.0776	ADAMTS19->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_19,chr5:128795958-129074376:+,SLC27A6->chr5:127873706-128369335:+,solute_carrier_family_27_member_6	KPL1_BREAST	0.88	1	0.2844	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ESR1--ULBP1	17	1	ESR1	3373	chr6:152023140:+	ULBP1	33955	chr6:150289743:+	ONLY_REF_SPLICE	YES	4	4	0.82	0.82	0.2198	0.0129	ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,ULBP1->UL16_binding_protein_1,chr6:150285143-150294846:+	KPL1_BREAST	0.82	0.82	0.2327	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	GATAD2B--NUP210L	14	13	GATAD2B	1243	chr1:153895209:-	NUP210L	46276	chr1:154002530:-	ONLY_REF_SPLICE	YES	7	0	0.79	1	0.181	0.168	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	KPL1_BREAST	0.79	1	0.349	TRUE	0	0	0	3	0	TRUE	ACH-000028
KPL1_BREAST	MTAP--CDKN2B-AS1	15	9	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	38778	chr9:22096371:+	ONLY_REF_SPLICE	YES	0	4	1	0.86	0.1939	0.1163	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	KPL1_BREAST	0.86	1	0.3102	FALSE	0	2	0	7	0	FALSE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	3	57	RPS6KB1	1240	chr17:57970686:+	VMP1	32885	chr17:57842332:+	ONLY_REF_SPLICE	YES	769	482	0.07	0.11	0.0388	0.7368	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.07	0.11	0.7756	TRUE	0	2	0	6	2	TRUE	ACH-000028
KPL1_BREAST	ESR1--CCDC170	15	6	ESR1	3373	chr6:152023140:+	CCDC170	40065	chr6:151907024:+	ONLY_REF_SPLICE	YES	4	28	0.84	0.43	0.1939	0.0776	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	KPL1_BREAST	0.43	0.84	0.2715	TRUE	0	1	0	2	1	TRUE	ACH-000028
KPL1_BREAST	TAF4--BRIP1	15	4	TAF4	2360	chr20:60639507:-	BRIP1	34337	chr17:59924581:-	ONLY_REF_SPLICE	YES	35	174	0.35	0.1	0.1939	0.0517	{Klijn_CCL:Breast=1},TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-	KPL1_BREAST	0.1	0.35	0.2456	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	MT-ND5--MT-ATP8	15	3	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2894	2	0.01	0.9	0.1939	0.0388	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KPL1_BREAST	0.01	0.9	0.2327	FALSE	43	37	8	105	0	FALSE	ACH-000028
KPL1_BREAST	TTC6--RP11-356O9.1	15	3	TTC6	1162	chr14:38065213:+	RP11-356O9.1	55376	chr14:38033424:+	INCL_NON_REF_SPLICE	YES	9	2	0.67	0.9	0.1939	0.0388	LOCAL_REARRANGEMENT:+:[16722],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,RP11-356O9.1->chr14:38033252-38048330:+	KPL1_BREAST	0.67	0.9	0.2327	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	TAF4--LAMA5	13	9	TAF4	9117	chr20:60582603:-	LAMA5	41135	chr20:60910325:-	ONLY_REF_SPLICE	YES	52	123	0.3	0.15	0.168	0.1163	TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5	KPL1_BREAST	0.15	0.3	0.2843	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	LEMD3--RP1-74B13.2	14	3	LEMD3	5721	chr12:65612399:+	RP1-74B13.2	18520	chr12:111283403:+	ONLY_REF_SPLICE	YES	22	0	0.44	1	0.181	0.0388	LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+,RP1-74B13.2->chr12:111269583-111283767:+	KPL1_BREAST	0.44	1	0.2198	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ADAMTS19--SLC27A6	12	10	ADAMTS19	2493	chr5:128797450:+	SLC27A6	44345	chr5:128364038:+	ONLY_REF_SPLICE	YES	8	0	0.73	1	0.1551	0.1293	ADAMTS19->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_19,chr5:128795958-129074376:+,SLC27A6->chr5:127873706-128369335:+,solute_carrier_family_27_member_6	KPL1_BREAST	0.73	1	0.2844	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ARRB1--MAP6	13	5	ARRB1	19717	chr11:74979933:-	MAP6	29519	chr11:75319367:-	ONLY_REF_SPLICE	YES	38	0	0.32	1	0.168	0.0646	ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,MAP6->chr11:75297963-75380165:-,microtubule_associated_protein_6	KPL1_BREAST	0.32	1	0.2326	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	PLXDC1--TAF13	14	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.181	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	KPL1_BREAST	1	1	0.181	TRUE	7	10	0	216	0	FALSE	ACH-000028
KPL1_BREAST	NAV1--GPR37L1	12	7	NAV1	8867	chr1:201709204:+	GPR37L1	49629	chr1:202096869:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1551	0.0905	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,GPR37L1->G_protein-coupled_receptor_37_like_1,chr1:202091986-202102720:+	KPL1_BREAST	1	1	0.2456	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	PNPLA7--DPH7	13	3	PNPLA7	11064	chr9:140409831:-	DPH7	42870	chr9:140450100:-	ONLY_REF_SPLICE	YES	0	93	1	0.15	0.168	0.0388	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[4370],PNPLA7->chr9:140354404-140444986:-,patatin_like_phospholipase_domain_containing_7,DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7	KPL1_BREAST	0.15	1	0.2068	TRUE	0	4	1	2	4	TRUE	ACH-000028
KPL1_BREAST	MT-ND5--MT-ATP8	12	5	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1551	0.0646	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KPL1_BREAST	0.94	1	0.2197	FALSE	43	37	8	105	0	FALSE	ACH-000028
KPL1_BREAST	MT-ND6--MT-TE	12	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1551	0.0517	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPL1_BREAST	1	1	0.2068	FALSE	499	1288	110	792	0	FALSE	ACH-000028
KPL1_BREAST	MTAP--CDKN2B-AS1	10	11	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	37616	chr9:22092307:+	ONLY_REF_SPLICE	YES	0	2	1	0.91	0.1293	0.1422	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	KPL1_BREAST	0.91	1	0.2715	FALSE	0	2	0	5	0	FALSE	ACH-000028
KPL1_BREAST	RP11-15E18.1--LPPR5	12	2	RP11-15E18.1	1209	chr17:58603862:+	LPPR5	11249	chr1:99422297:-	ONLY_REF_SPLICE	YES	10	5	0.58	0.74	0.1551	0.0259	RP11-15E18.1->chr17:58603654-58628159:+,LPPR5->chr1:99355806-99470588:-	KPL1_BREAST	0.58	0.74	0.181	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ZBTB25--RP11-973N13.2	11	5	ZBTB25	9041	chr14:64952683:-	RP11-973N13.2	22770	chr14:65067081:-	INCL_NON_REF_SPLICE	YES	14	0	0.53	1	0.1422	0.0646	LOCAL_REARRANGEMENT:-:[95030],ZBTB25->chr14:64915824-64971931:-,zinc_finger_and_BTB_domain_containing_25,RP11-973N13.2->chr14:65066961-65068362:-	KPL1_BREAST	0.53	1	0.2068	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ANKS1A--UHRF1BP1	12	0	ANKS1A	1335	chr6:34857376:+	UHRF1BP1	33692	chr6:34801994:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1551	0	LOCAL_REARRANGEMENT:+:[6127],ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+,UHRF1BP1->UHRF1_binding_protein_1,chr6:34759857-34850915:+	KPL1_BREAST	1	1	0.1551	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	NRIP1--AF127936.7	12	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1551	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KPL1_BREAST	1	1	0.1551	FALSE	292	1546	117	613	0	FALSE	ACH-000028
KPL1_BREAST	TBL1XR1--RGS17	12	0	TBL1XR1	1353	chr3:176914909:-	RGS17	34360	chr6:153365178:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1551	0	chimerdb_pubmed{Breast carcinoma,breast cancer},TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RGS17->chr6:153325594-153452384:-,regulator_of_G-protein_signaling_17	KPL1_BREAST	1	1	0.1551	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	RSBN1--AP4B1-AS1	6	21	RSBN1	1767	chr1:114354332:-	AP4B1-AS1	19099	chr1:114440490:+	ONLY_REF_SPLICE	YES	27	0	0.5	1	0.0776	0.2715	LOCAL_INVERSION:-:+:[44159],RSBN1->chr1:114304454-114355098:-,round_spermatid_basic_protein_1,AP4B1-AS1->AP4B1_antisense_RNA_1,chr1:114399257-114443859:+	KPL1_BREAST	0.5	1	0.3491	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	MT-CO3--MT-ATP6	3	32	MT-CO3	1123	chrM:9329:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	1	18	0.97	0.66	0.0388	0.4137	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KPL1_BREAST	0.66	0.97	0.4525	FALSE	189	492	56	216	0	FALSE	ACH-000028
KPL1_BREAST	MT-CO3--MT-ATP6	3	32	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	2	27	0.95	0.56	0.0388	0.4137	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KPL1_BREAST	0.56	0.95	0.4525	FALSE	189	492	56	216	0	FALSE	ACH-000028
KPL1_BREAST	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1422	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KPL1_BREAST	1	1	0.1422	TRUE	0	0	0	434	0	FALSE	ACH-000028
KPL1_BREAST	PRMT2--DIP2A	10	3	PRMT2	2824	chr21:48056902:+	DIP2A	44795	chr21:47971547:+	ONLY_REF_SPLICE	YES	190	36	0.06	0.27	0.1293	0.0388	LOCAL_REARRANGEMENT:+:[65153],PRMT2->chr21:48055079-48085036:+,protein_arginine_methyltransferase_2,DIP2A->chr21:47878812-47989926:+,disco_interacting_protein_2_homolog_A	KPL1_BREAST	0.06	0.27	0.1681	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	FKBP1A--SIRPG	10	2	FKBP1A	4187	chr20:1356135:-	SIRPG	13743	chr20:1630054:-	ONLY_REF_SPLICE	YES	229	0	0.05	1	0.1293	0.0259	FKBP1A->FK506_binding_protein_1A,chr20:1349622-1373806:-,SIRPG->chr20:1609798-1638425:-,signal_regulatory_protein_gamma	KPL1_BREAST	0.05	1	0.1552	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	MT-CO3--MT-ATP6	3	30	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.0388	0.3878	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KPL1_BREAST	0.97	1	0.4266	FALSE	189	492	56	216	0	FALSE	ACH-000028
KPL1_BREAST	SULF2--PRICKLE2	9	4	SULF2	1569	chr20:46414792:-	PRICKLE2	40949	chr3:64085601:-	ONLY_REF_SPLICE	YES	106	5	0.11	0.72	0.1163	0.0517	SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	KPL1_BREAST	0.11	0.72	0.168	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ARRB1--KLHL35	9	3	ARRB1	1242	chr11:75062632:-	KLHL35	31211	chr11:75136626:-	ONLY_REF_SPLICE	YES	20	14	0.38	0.46	0.1163	0.0388	LOCAL_REARRANGEMENT:-:[70565],ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,KLHL35->chr11:75133438-75141674:-,kelch_like_family_member_35	KPL1_BREAST	0.38	0.46	0.1551	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	PRG4--HMCN1	6	14	PRG4	1679	chr1:186266083:+	HMCN1	107834	chr1:186106630:+	ONLY_REF_SPLICE	YES	0	66	1	0.23	0.0776	0.181	PRG4->Oncogene{Bushman},chr1:186265405-186283694:+,proteoglycan_4,HMCN1->chr1:185703683-186160085:+,hemicentin_1	KPL1_BREAST	0.23	1	0.2586	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	TNS3--PLCB1	9	2	TNS3	34251	chr7:47341784:-	PLCB1	51280	chr20:8352029:+	ONLY_REF_SPLICE	YES	11	6	0.5	0.65	0.1163	0.0259	TNS3->chr7:47314752-47622156:-,tensin_3,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	KPL1_BREAST	0.5	0.65	0.1422	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	PLCG1--TOP1	9	0	PLCG1	1899	chr20:39766498:+	TOP1	35225	chr20:39729878:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1163	0	LOCAL_REARRANGEMENT:+:[12473],PLCG1->chr20:39765600-39811629:+,phospholipase_C_gamma_1,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	KPL1_BREAST	1	1	0.1163	TRUE	0	0	0	3	0	TRUE	ACH-000028
KPL1_BREAST	RNF41--APOF	9	0	RNF41	1174	chr12:56615544:-	APOF	14818	chr12:56755973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1163	0	RNF41->chr12:56598285-56615717:-,ring_finger_protein_41,APOF->apolipoprotein_F,chr12:56754353-56756607:-	KPL1_BREAST	1	1	0.1163	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RSBN1--DCLRE1B	8	4	RSBN1	1767	chr1:114354332:-	DCLRE1B	17045	chr1:114448091:+	INCL_NON_REF_SPLICE	YES	27	45	0.31	0.21	0.1034	0.0517	LOCAL_INVERSION:-:+:[92665],RSBN1->chr1:114304454-114355098:-,round_spermatid_basic_protein_1,DCLRE1B->DNA_cross-link_repair_1B,chr1:114447763-114456708:+	KPL1_BREAST	0.21	0.31	0.1551	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ZNF654--HMGB2	9	0	ZNF654	1688	chr3:88188941:+	HMGB2	12525	chr4:174253314:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1163	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KPL1_BREAST	1	1	0.1163	TRUE	0	0	0	518	0	FALSE	ACH-000028
KPL1_BREAST	EIF3H--RAD21	7	6	EIF3H	7051	chr8:117738255:-	RAD21	24431	chr8:117879000:-	ONLY_REF_SPLICE	YES	872	29	0.01	0.31	0.0905	0.0776	LOCAL_REARRANGEMENT:-:[79010],EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-	KPL1_BREAST	0.01	0.31	0.1681	TRUE	0	0	0	7	0	FALSE	ACH-000028
KPL1_BREAST	MYO9B--FCHO1	2	26	MYO9B	2996	chr19:17213367:+	FCHO1	54607	chr19:17881273:+	ONLY_REF_SPLICE	YES	23	0	0.55	1	0.0259	0.3361	{Klijn_CCL:Breast=1},MYO9B->chr19:17186591-17325346:+,myosin_IXB,FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+	KPL1_BREAST	0.55	1	0.362	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	OTUD5--GRIPAP1	8	2	OTUD5	6227	chrX:48791737:-	GRIPAP1	14534	chrX:48855916:-	ONLY_REF_SPLICE	YES	85	1	0.11	0.91	0.1034	0.0259	LOCAL_REARRANGEMENT:-:[14486],OTUD5->OTU_deubiquitinase_5,chrX:48779305-48815648:-,GRIPAP1->GRIP1_associated_protein_1,chrX:48830134-48858675:-	KPL1_BREAST	0.11	0.91	0.1293	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	MTAP--CDKN2B-AS1	7	5	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	39664	chr9:22097257:+	ONLY_REF_SPLICE	YES	0	4	1	0.75	0.0905	0.0646	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	KPL1_BREAST	0.75	1	0.1551	FALSE	0	2	0	7	0	FALSE	ACH-000028
KPL1_BREAST	PDE8A--SCAND2P	8	1	PDE8A	2621	chr15:85525579:+	SCAND2P	36611	chr15:85180578:+	ONLY_REF_SPLICE	YES	12	4	0.43	0.69	0.1034	0.0129	PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A,SCAND2P->SCAN_domain_containing_2_pseudogene,chr15:85174682-85185695:+	KPL1_BREAST	0.43	0.69	0.1163	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	PLCG1--TOP1	8	0	PLCG1	1076	chr20:39765675:+	TOP1	35196	chr20:39729849:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1034	0	LOCAL_REARRANGEMENT:+:[12473],PLCG1->chr20:39765600-39811629:+,phospholipase_C_gamma_1,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	KPL1_BREAST	1	1	0.1034	TRUE	0	0	0	3	0	TRUE	ACH-000028
KPL1_BREAST	RP11-977B10.2--SLC16A7	7	4	RP11-977B10.2	1104	chr12:49658436:-	SLC16A7	12410	chr12:60098553:+	ONLY_REF_SPLICE	YES	1	15	0.92	0.42	0.0905	0.0517	RP11-977B10.2->chr12:49627352-49658539:-,SLC16A7->chr12:59989848-60176395:+,solute_carrier_family_16_member_7	KPL1_BREAST	0.42	0.92	0.1422	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ABCA5--ITGB4	7	3	ABCA5	2312	chr17:67321840:-	ITGB4	64445	chr17:73738422:+	ONLY_REF_SPLICE	YES	1	149	0.91	0.06	0.0905	0.0388	ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	KPL1_BREAST	0.06	0.91	0.1293	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	B3GNTL1--SLC9A8	7	3	B3GNTL1	14863	chr17:80914571:-	SLC9A8	37320	chr20:48494518:+	ONLY_REF_SPLICE	YES	3	26	0.77	0.28	0.0905	0.0388	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,SLC9A8->chr20:48429250-48508779:+,solute_carrier_family_9_member_A8	KPL1_BREAST	0.28	0.77	0.1293	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	MT-ND6--MT-TE	5	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0.1422	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPL1_BREAST	1	1	0.2068	FALSE	499	1288	110	792	0	FALSE	ACH-000028
KPL1_BREAST	PAPOLA--AK7	4	15	PAPOLA	2168	chr14:96968937:+	AK7	41634	chr14:96909067:+	ONLY_REF_SPLICE	NO	154	3	0.11	0.86	0.0517	0.1939	LOCAL_REARRANGEMENT:+:[12006],PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	KPL1_BREAST	0.11	0.86	0.2456	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	RPS6KB1--CLTC	4	15	RPS6KB1	5427	chr17:57990165:+	CLTC	55100	chr17:57767997:+	ONLY_REF_SPLICE	YES	868	1217	0.02	0.02	0.0517	0.1939	RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain	KPL1_BREAST	0.02	0.02	0.2456	TRUE	0	0	0	1	0	FALSE	ACH-000028
KPL1_BREAST	MT-ND6--MT-TE	5	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0646	0.1293	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPL1_BREAST	0.94	1	0.1939	FALSE	499	1288	110	792	0	FALSE	ACH-000028
KPL1_BREAST	RNF126--PRSS57	7	1	RNF126	1231	chr19:663047:-	PRSS57	12463	chr19:694970:-	ONLY_REF_SPLICE	YES	19	0	0.3	1	0.0905	0.0129	LOCAL_REARRANGEMENT:-:[22244],RNF126->chr19:647526-663277:-,ring_finger_protein_126,PRSS57->chr19:685521-695460:-,protease,_serine_57	KPL1_BREAST	0.3	1	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RP11-108K3.1--GLDN	5	9	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	1	1	0.93	0.93	0.0646	0.1163	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	KPL1_BREAST	0.93	0.93	0.1809	FALSE	0	14	0	30	0	FALSE	ACH-000028
KPL1_BREAST	RAD51C--ATXN7	6	4	RAD51C	11155	chr17:56801461:+	ATXN7	25577	chr3:63965591:+	ONLY_REF_SPLICE	YES	183	37	0.05	0.21	0.0776	0.0517	RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+,ATXN7->ataxin_7,chr3:63850233-63989138:+	KPL1_BREAST	0.05	0.21	0.1293	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	MT-CO3--MT-ATP6	4	11	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	1	0.94	0.94	0.0517	0.1422	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KPL1_BREAST	0.94	0.94	0.1939	FALSE	189	492	56	216	0	FALSE	ACH-000028
KPL1_BREAST	RPS6KB1--VMP1	6	3	RPS6KB1	7326	chr17:57992064:+	VMP1	43938	chr17:57919443:+	INCL_NON_REF_SPLICE	YES	738	433	0.01	0.02	0.0776	0.0388	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.01	0.02	0.1164	TRUE	0	0	0	1	0	FALSE	ACH-000028
KPL1_BREAST	KIF1C--ENO3	6	2	KIF1C	9681	chr17:4910837:+	ENO3	29308	chr17:4855123:+	ONLY_REF_SPLICE	YES	184	11	0.04	0.42	0.0776	0.0259	LOCAL_REARRANGEMENT:+:[40817],KIF1C->chr17:4901243-4931696:+,kinesin_family_member_1C,ENO3->chr17:4851387-4860426:+,enolase_3	KPL1_BREAST	0.04	0.42	0.1035	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	MT-CO3--MT-ATP6	5	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	3	1	0.79	0.92	0.0646	0.0776	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KPL1_BREAST	0.79	0.92	0.1422	FALSE	189	492	56	216	0	FALSE	ACH-000028
KPL1_BREAST	MTAP--CDKN2B-AS1	6	2	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	40771	chr9:22112319:+	ONLY_REF_SPLICE	YES	0	8	1	0.5	0.0776	0.0259	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	KPL1_BREAST	0.5	1	0.1035	FALSE	0	5	0	7	0	FALSE	ACH-000028
KPL1_BREAST	ARHGAP10--EDNRA	6	1	ARHGAP10	26218	chr4:148944564:+	EDNRA	37025	chr4:148406764:+	ONLY_REF_SPLICE	YES	22	0	0.24	1	0.0776	0.0129	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	KPL1_BREAST	0.24	1	0.0905	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	NRIP1--AF127936.7	6	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.3	1	0.0776	0.0129	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KPL1_BREAST	0.3	1	0.0905	FALSE	164	806	69	479	0	FALSE	ACH-000028
KPL1_BREAST	TRIM37--DHX40P1	5	5	TRIM37	12705	chr17:57148184:-	DHX40P1	43517	chr17:58054131:-	ONLY_REF_SPLICE	YES	654	59	0.02	0.14	0.0646	0.0646	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,DHX40P1->DEAH-box_helicase_40_pseudogene_1,chr17:58053370-58079745:-	KPL1_BREAST	0.02	0.14	0.1292	TRUE	0	0	0	1	0	FALSE	ACH-000028
KPL1_BREAST	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0776	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KPL1_BREAST	1	1	0.0776	FALSE	183	104	9	328	0	FALSE	ACH-000028
KPL1_BREAST	NPM1P24--SET	6	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0776	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KPL1_BREAST	1	1	0.0776	TRUE	0	0	0	434	0	FALSE	ACH-000028
KPL1_BREAST	PLCG1--TOP1	6	0	PLCG1	1899	chr20:39766498:+	TOP1	35196	chr20:39729849:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0776	0	LOCAL_REARRANGEMENT:+:[12473],PLCG1->chr20:39765600-39811629:+,phospholipase_C_gamma_1,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	KPL1_BREAST	1	1	0.0776	TRUE	0	0	0	3	0	TRUE	ACH-000028
KPL1_BREAST	SMARCC1--EMCN	5	4	SMARCC1	5204	chr3:47779519:-	EMCN	42115	chr4:101505123:-	ONLY_REF_SPLICE	YES	42	0	0.18	1	0.0646	0.0517	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,EMCN->chr4:101316498-101801283:-,endomucin	KPL1_BREAST	0.18	1	0.1163	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	AC005037.3--NIF3L1	5	3	AC005037.3	1368	chr2:201828353:+	NIF3L1	10743	chr2:201757969:+	ONLY_REF_SPLICE	YES	0	92	1	0.08	0.0646	0.0388	LOCAL_REARRANGEMENT:+:[59331],AC005037.3->chr2:201827986-201873825:+,NIF3L1->NGG1_interacting_factor_3_like_1,chr2:201754050-201768655:+	KPL1_BREAST	0.08	1	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	MYO9B--FCHO1	4	7	MYO9B	2996	chr19:17213367:+	FCHO1	54935	chr19:17881601:+	ONLY_REF_SPLICE	YES	23	7	0.32	0.61	0.0517	0.0905	{Klijn_CCL:Breast=1},MYO9B->chr19:17186591-17325346:+,myosin_IXB,FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+	KPL1_BREAST	0.32	0.61	0.1422	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ZNF584--AC010642.1	5	3	ZNF584	1159	chr19:58913029:+	AC010642.1	18177	chr19:58823532:+	ONLY_REF_SPLICE	YES	2	68	0.8	0.11	0.0646	0.0388	LOCAL_REARRANGEMENT:+:[86308],ZNF584->chr19:58912871-58929694:+,zinc_finger_protein_584,AC010642.1->chr19:58790332-58826563:+	KPL1_BREAST	0.11	0.8	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	AC099850.1--VMP1	1	18	AC099850.1	1994	chr17:57184952:+	VMP1	23016	chr17:57917129:+	ONLY_REF_SPLICE	NO	56	1293	0.25	0.01	0.0129	0.2327	AC099850.1->chr17:57183959-57195628:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	KPL1_BREAST	0.01	0.25	0.2456	TRUE	0	0	0	1	0	FALSE	ACH-000028
KPL1_BREAST	RP11-108K3.1--GLDN	3	10	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	3	0.93	0.81	0.0388	0.1293	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	KPL1_BREAST	0.81	0.93	0.1681	FALSE	0	19	0	46	0	FALSE	ACH-000028
KPL1_BREAST	C11orf49--ATG13	5	1	C11orf49	1163	chr11:46958402:+	ATG13	44947	chr11:46686933:+	ONLY_REF_SPLICE	YES	15	77	0.29	0.07	0.0646	0.0129	C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49,ATG13->autophagy_related_13,chr11:46638826-46696368:+	KPL1_BREAST	0.07	0.29	0.0775	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	MT-ATP6--MT-CO1	5	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10496	19802	0	0	0.0646	0.0129	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KPL1_BREAST	0	0	0.0775	FALSE	183	104	9	328	0	FALSE	ACH-000028
KPL1_BREAST	RNF126--PRSS57	5	1	RNF126	1231	chr19:663047:-	PRSS57	12466	chr19:694967:-	INCL_NON_REF_SPLICE	YES	19	0	0.24	1	0.0646	0.0129	LOCAL_REARRANGEMENT:-:[22244],RNF126->chr19:647526-663277:-,ring_finger_protein_126,PRSS57->chr19:685521-695460:-,protease,_serine_57	KPL1_BREAST	0.24	1	0.0775	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	TANC2--CA4	1	17	TANC2	2143	chr17:61151375:+	CA4	53935	chr17:58233921:+	ONLY_REF_SPLICE	NO	33	4	0.35	0.82	0.0129	0.2198	{Klijn_CCL:Breast=1},TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,CA4->carbonic_anhydrase_4,chr17:58227297-58248260:+	KPL1_BREAST	0.35	0.82	0.2327	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	DNAJC25--UGCG	5	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0646	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	KPL1_BREAST	1	1	0.0646	TRUE	50	73	10	50	0	FALSE	ACH-000028
KPL1_BREAST	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KPL1_BREAST	1	1	0.0646	TRUE	0	0	0	434	0	FALSE	ACH-000028
KPL1_BREAST	SMARCA4--CARM1	5	0	SMARCA4	1253	chr19:11071850:+	CARM1	48111	chr19:11015627:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0646	0	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[38145],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	KPL1_BREAST	1	1	0.0646	TRUE	0	2	0	2	1	TRUE	ACH-000028
KPL1_BREAST	MTAP--CDKN2B-AS1	2	11	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	27023	chr9:22046316:+	ONLY_REF_SPLICE	YES	0	2	1	0.87	0.0259	0.1422	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	KPL1_BREAST	0.87	1	0.1681	FALSE	0	3	0	6	0	FALSE	ACH-000028
KPL1_BREAST	RAD51C--ATXN7	4	3	RAD51C	10094	chr17:56798173:+	ATXN7	25577	chr3:63965591:+	ONLY_REF_SPLICE	YES	205	37	0.03	0.16	0.0517	0.0388	RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+,ATXN7->ataxin_7,chr3:63850233-63989138:+	KPL1_BREAST	0.03	0.16	0.0905	TRUE	0	0	0	2	0	FALSE	ACH-000028
KPL1_BREAST	CTC-228N24.3--FBN2	4	2	CTC-228N24.3	5579	chr5:127396836:-	FBN2	34082	chr5:127782299:-	ONLY_REF_SPLICE	YES	67	0	0.08	1	0.0517	0.0259	CTC-228N24.3->chr5:127276118-127418864:-,FBN2->chr5:127593601-127994878:-,fibrillin_2	KPL1_BREAST	0.08	1	0.0776	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	MT-ND5--MT-ATP8	4	2	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4482	23	0	0.21	0.0517	0.0259	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KPL1_BREAST	0	0.21	0.0776	FALSE	43	37	8	105	0	FALSE	ACH-000028
KPL1_BREAST	RP11-762I7.5--MMP19	3	6	RP11-762I7.5	9677	chr12:56194638:-	MMP19	20536	chr12:56236222:-	ONLY_REF_SPLICE	YES	409	0	0.02	1	0.0388	0.0776	LOCAL_REARRANGEMENT:-:[7887],RP11-762I7.5->chr12:56151059-56221330:-,MMP19->chr12:56229217-56236750:-,matrix_metallopeptidase_19	KPL1_BREAST	0.02	1	0.1164	TRUE	0	0	0	2	0	FALSE	ACH-000028
KPL1_BREAST	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0388	0.0776	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KPL1_BREAST	0.9	1	0.1164	FALSE	407	2205	196	549	0	FALSE	ACH-000028
KPL1_BREAST	TTLL1--TTLL12	4	2	TTLL1	8830	chr22:43455390:-	TTLL12	16713	chr22:43579155:-	ONLY_REF_SPLICE	YES	19	23	0.24	0.21	0.0517	0.0259	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[77194],TTLL1->chr22:43435522-43485434:-,tubulin_tyrosine_ligase_like_1,TTLL12->chr22:43562628-43583139:-,tubulin_tyrosine_ligase_like_12	KPL1_BREAST	0.21	0.24	0.0776	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	KCND3--PPM1E	3	5	KCND3	3586	chr1:112524243:-	PPM1E	20698	chr17:57043055:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0388	0.0646	KCND3->chr1:112313284-112531777:-,potassium_voltage-gated_channel_subfamily_D_member_3,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	KPL1_BREAST	0.8	1	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	ANKRD11--FANCA	4	0	ANKRD11	4629	chr16:89484692:-	FANCA	58016	chr16:89839792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-	KPL1_BREAST	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	ARFGEF2--SULF2	1	12	ARFGEF2	1121	chr20:47538547:+	SULF2	50567	chr20:46331414:-	ONLY_REF_SPLICE	YES	12	585	0.52	0.02	0.0129	0.1551	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Breast=1},ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	KPL1_BREAST	0.02	0.52	0.168	TRUE	0	0	0	1	0	FALSE	ACH-000028
KPL1_BREAST	C15orf57--CBX3	4	0	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KPL1_BREAST	1	1	0.0517	TRUE	267	562	48	632	0	FALSE	ACH-000028
KPL1_BREAST	FAM222B--PHF12	4	0	FAM222B	8446	chr17:27093604:-	PHF12	22781	chr17:27254081:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	KPL1_BREAST	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KPL1_BREAST	1	1	0.0517	FALSE	189	492	56	216	0	FALSE	ACH-000028
KPL1_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPL1_BREAST	1	1	0.0517	FALSE	499	1288	110	792	0	FALSE	ACH-000028
KPL1_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPL1_BREAST	1	1	0.0517	FALSE	499	1288	110	792	0	FALSE	ACH-000028
KPL1_BREAST	MTAP--CDKN2B-AS1	1	12	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	23434	chr9:21995047:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0.1551	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	KPL1_BREAST	1	1	0.168	FALSE	0	0	0	3	0	FALSE	ACH-000028
KPL1_BREAST	NCOA3--AC005808.3	4	0	NCOA3	14149	chr20:46266527:+	AC005808.3	30690	chr20:52234376:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,AC005808.3->chr20:52224893-52251129:+	KPL1_BREAST	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	PARD6B--BCAS3	4	0	PARD6B	1309	chr20:49348389:+	BCAS3	57781	chr17:59445688:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	PARD6B->chr20:49348081-49373332:+,par-6_family_cell_polarity_regulator_beta,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	KPL1_BREAST	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	VAV3--AP4B1-AS1	4	0	VAV3	37724	chr1:108138834:-	AP4B1-AS1	49352	chr1:114442494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	VAV3->Oncogene{Bushman},chr1:108113782-108507766:-,vav_guanine_nucleotide_exchange_factor_3,AP4B1-AS1->AP4B1_antisense_RNA_1,chr1:114399257-114443859:+	KPL1_BREAST	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	BRWD1--LCA5L	3	3	BRWD1	3513	chr21:40684767:-	LCA5L	64134	chr21:40801137:-	ONLY_REF_SPLICE	YES	37	13	0.14	0.32	0.0388	0.0388	LOCAL_REARRANGEMENT:-:[84285],BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,LCA5L->Leber_congenital_amaurosis_5-like,chr21:40777770-40817731:-	KPL1_BREAST	0.14	0.32	0.0776	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	ESR1--CCDC170	2	7	ESR1	2242	chr6:152011799:+	CCDC170	38747	chr6:151894309:+	ONLY_REF_SPLICE	YES	4	11	0.69	0.45	0.0259	0.0905	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	KPL1_BREAST	0.45	0.69	0.1164	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	MTAP--CDKN2B-AS1	1	11	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	27457	chr9:22046750:+	ONLY_REF_SPLICE	YES	0	3	1	0.8	0.0129	0.1422	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	KPL1_BREAST	0.8	1	0.1551	FALSE	0	3	0	6	0	FALSE	ACH-000028
KPL1_BREAST	RP11-108K3.1--GLDN	2	7	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	2	1	0.82	0.0259	0.0905	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	KPL1_BREAST	0.82	1	0.1164	FALSE	1	20	0	46	0	FALSE	ACH-000028
KPL1_BREAST	ESR1--CCDC170	3	2	ESR1	3373	chr6:152023140:+	CCDC170	41345	chr6:151914242:+	ONLY_REF_SPLICE	YES	4	8	0.56	0.38	0.0388	0.0259	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	KPL1_BREAST	0.38	0.56	0.0647	TRUE	0	1	0	1	1	TRUE	ACH-000028
KPL1_BREAST	MT-CO3--MT-ATP6	3	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0388	0.0259	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KPL1_BREAST	0.62	1	0.0647	FALSE	189	492	56	216	0	FALSE	ACH-000028
KPL1_BREAST	RP11-108K3.1--GLDN	1	9	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	1	2	0.91	0.83	0.0129	0.1163	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	KPL1_BREAST	0.83	0.91	0.1292	FALSE	0	14	0	30	0	FALSE	ACH-000028
KPL1_BREAST	SBNO2--CRIP2	3	1	SBNO2	5837	chr19:1149368:-	CRIP2	33403	chr14:105944603:+	ONLY_REF_SPLICE	YES	73	70	0.05	0.05	0.0388	0.0129	SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),CRIP2->Oncogene{Bushman},chr14:105939299-105946499:+,cysteine_rich_protein_2	KPL1_BREAST	0.05	0.05	0.0517	TRUE	0	1	0	1	0	FALSE	ACH-000028
KPL1_BREAST	TAF4--LAMA5	1	9	TAF4	17661	chr20:60572606:-	LAMA5	33837	chr20:60922084:-	ONLY_REF_SPLICE	NO	102	95	0.09	0.1	0.0129	0.1163	TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5	KPL1_BREAST	0.09	0.1	0.1292	TRUE	0	0	0	1	0	FALSE	ACH-000028
KPL1_BREAST	ARHGAP10--EDNRA	3	0	ARHGAP10	26218	chr4:148944564:+	EDNRA	44527	chr4:148463630:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	KPL1_BREAST	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	EMC6--MT-ND4L	3	0	EMC6	1522	chr17:3572630:+	MT-ND4L	4856	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	EMC6->ER_membrane_protein_complex_subunit_6,chr17:3572109-3572962:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KPL1_BREAST	1	1	0.0388	FALSE	0	0	0	1	0	FALSE	ACH-000028
KPL1_BREAST	FAF1--CALR4P	3	0	FAF1	9453	chr1:51121114:-	CALR4P	31244	chr1:52039727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,CALR4P->calreticulin_4,_pseudogene,chr1:52027538-52060569:-	KPL1_BREAST	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KPL1_BREAST	1	1	0.0388	FALSE	189	492	56	216	0	FALSE	ACH-000028
KPL1_BREAST	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KPL1_BREAST	1	1	0.0388	FALSE	189	492	56	216	0	FALSE	ACH-000028
KPL1_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPL1_BREAST	1	1	0.0388	FALSE	499	1288	110	792	0	FALSE	ACH-000028
KPL1_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1014	chrM:14660:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPL1_BREAST	1	1	0.0388	FALSE	499	1288	110	792	0	FALSE	ACH-000028
KPL1_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KPL1_BREAST	1	1	0.0388	FALSE	499	1288	110	792	0	FALSE	ACH-000028
KPL1_BREAST	PTPLB--MYLK	1	8	PTPLB	2902	chr3:123301059:-	MYLK	23855	chr3:123471385:-	ONLY_REF_SPLICE	NO	135	19	0.06	0.32	0.0129	0.1034	LOCAL_REARRANGEMENT:-:[24864],PTPLB->chr3:123209667-123304032:-,MYLK->chr3:123328896-123603178:-,myosin_light_chain_kinase	KPL1_BREAST	0.06	0.32	0.1163	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RNF41--APOF	3	0	RNF41	1031	chr12:56615687:-	APOF	14818	chr12:56755973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	RNF41->chr12:56598285-56615717:-,ring_finger_protein_41,APOF->apolipoprotein_F,chr12:56754353-56756607:-	KPL1_BREAST	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RP11-108K3.1--GLDN	1	8	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	3	1	0.75	0.0129	0.1034	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	KPL1_BREAST	0.75	1	0.1163	FALSE	0	30	1	55	0	FALSE	ACH-000028
KPL1_BREAST	STXBP6--OGFOD3	3	0	STXBP6	6848	chr14:25443871:-	OGFOD3	24747	chr17:80369406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	STXBP6->chr14:25278862-25519503:-,syntaxin_binding_protein_6,OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-	KPL1_BREAST	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	AUTS2--C12orf49	2	3	AUTS2	7553	chr7:69599557:+	C12orf49	39054	chr12:117161028:-	ONLY_REF_SPLICE	YES	6	17	0.45	0.23	0.0259	0.0388	AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+,C12orf49->chr12:117153593-117175875:-,chromosome_12_open_reading_frame_49	KPL1_BREAST	0.23	0.45	0.0647	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	ATXN7--BCAS1	2	2	ATXN7	5937	chr3:63898901:+	BCAS1	31989	chr20:52612589:-	ONLY_REF_SPLICE	YES	13	41	0.24	0.09	0.0259	0.0259	ATXN7->ataxin_7,chr3:63850233-63989138:+,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	KPL1_BREAST	0.09	0.24	0.0518	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	BCAS4--ZMYND8	2	2	BCAS4	1280	chr20:49411710:+	ZMYND8	44670	chr20:45839542:-	ONLY_REF_SPLICE	YES	128	109	0.03	0.04	0.0259	0.0259	BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8	KPL1_BREAST	0.03	0.04	0.0518	TRUE	0	0	0	2	0	FALSE	ACH-000028
KPL1_BREAST	BRWD1--LCA5L	2	2	BRWD1	3513	chr21:40684767:-	LCA5L	66587	chr21:40795416:-	ONLY_REF_SPLICE	YES	37	18	0.1	0.18	0.0259	0.0259	LOCAL_REARRANGEMENT:-:[84285],BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,LCA5L->Leber_congenital_amaurosis_5-like,chr21:40777770-40817731:-	KPL1_BREAST	0.1	0.18	0.0518	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	GTF3C2--FNDC4	2	2	GTF3C2	1263	chr2:27579606:-	FNDC4	19361	chr2:27717570:-	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0259	0.0259	GTF3C2->chr2:27548716-27579868:-,general_transcription_factor_IIIC_subunit_2,FNDC4->chr2:27714750-27718112:-,fibronectin_type_III_domain_containing_4	KPL1_BREAST	0.19	1	0.0518	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0129	0.0776	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KPL1_BREAST	1	1	0.0905	FALSE	192	492	57	212	0	FALSE	ACH-000028
KPL1_BREAST	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	1	1	0.88	0.0129	0.0776	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KPL1_BREAST	0.88	1	0.0905	FALSE	467	2173	244	435	0	FALSE	ACH-000028
KPL1_BREAST	ARHGAP10--EDNRA	2	1	ARHGAP10	26218	chr4:148944564:+	EDNRA	38515	chr4:148441003:+	ONLY_REF_SPLICE	YES	22	0	0.12	1	0.0259	0.0129	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	KPL1_BREAST	0.12	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	DEPDC1B--ELOVL7	2	1	DEPDC1B	4088	chr5:59982789:-	ELOVL7	32689	chr5:60053472:-	ONLY_REF_SPLICE	YES	72	11	0.04	0.21	0.0259	0.0129	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[51601],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,ELOVL7->ELOVL_fatty_acid_elongase_7,chr5:60047618-60140216:-	KPL1_BREAST	0.04	0.21	0.0388	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	DEPDC1B--ELOVL7	2	1	DEPDC1B	8761	chr5:59938639:-	ELOVL7	33826	chr5:60050660:-	ONLY_REF_SPLICE	YES	39	45	0.07	0.06	0.0259	0.0129	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[51601],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,ELOVL7->ELOVL_fatty_acid_elongase_7,chr5:60047618-60140216:-	KPL1_BREAST	0.06	0.07	0.0388	TRUE	0	0	0	1	0	FALSE	ACH-000028
KPL1_BREAST	DNM2--SLC44A2	2	1	DNM2	1325	chr19:10829079:+	SLC44A2	42946	chr19:10736929:+	ONLY_REF_SPLICE	YES	104	86	0.03	0.03	0.0259	0.0129	LOCAL_REARRANGEMENT:+:[73520],DNM2->chr19:10828755-10944164:+,dynamin_2,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	KPL1_BREAST	0.03	0.03	0.0388	TRUE	0	1	0	2	0	FALSE	ACH-000028
KPL1_BREAST	ELP2--SLC39A6	2	1	ELP2	2707	chr18:33713279:+	SLC39A6	37556	chr18:33696742:-	ONLY_REF_SPLICE	YES	275	901	0.01	0	0.0259	0.0129	LOCAL_INVERSION:+:-:[59],ELP2->chr18:33709407-33757909:+,elongator_acetyltransferase_complex_subunit_2,SLC39A6->Oncogene{Bushman},chr18:33688495-33709348:-,solute_carrier_family_39_member_6	KPL1_BREAST	0	0.01	0.0388	FALSE	0	0	0	2	0	FALSE	ACH-000028
KPL1_BREAST	FKBP1A--SIRPG	2	1	FKBP1A	1329	chr20:1373478:-	SIRPG	13743	chr20:1630054:-	ONLY_REF_SPLICE	YES	274	0	0.01	1	0.0259	0.0129	FKBP1A->FK506_binding_protein_1A,chr20:1349622-1373806:-,SIRPG->chr20:1609798-1638425:-,signal_regulatory_protein_gamma	KPL1_BREAST	0.01	1	0.0388	FALSE	0	0	0	1	0	FALSE	ACH-000028
KPL1_BREAST	KCNV1--C8orf47	2	1	KCNV1	4450	chr8:110984487:-	C8orf47	14823	chr8:99101304:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0.0129	KCNV1->chr8:110975874-110988076:-,potassium_voltage-gated_channel_modifier_subfamily_V_member_1,C8orf47->chr8:99076539-99105838:+	KPL1_BREAST	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	NAV1--GPR37L1	2	1	NAV1	7107	chr1:201687883:+	GPR37L1	49629	chr1:202096869:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0.0129	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,GPR37L1->G_protein-coupled_receptor_37_like_1,chr1:202091986-202102720:+	KPL1_BREAST	1	1	0.0388	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	NCOA3--RP11-233E12.1	2	1	NCOA3	1163	chr20:46130763:+	RP11-233E12.1	32192	chr1:107380742:+	ONLY_REF_SPLICE	YES	152	0	0.02	1	0.0259	0.0129	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,RP11-233E12.1->chr1:107360861-107380789:+	KPL1_BREAST	0.02	1	0.0388	TRUE	0	0	0	2	0	FALSE	ACH-000028
KPL1_BREAST	PROSC--CHMP1A	2	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	67	426	0.04	0.01	0.0259	0.0129	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	KPL1_BREAST	0.01	0.04	0.0388	FALSE	13	55	3	29	0	FALSE	ACH-000028
KPL1_BREAST	UBE2E2--RP11-20B7.1	2	1	UBE2E2	3680	chr3:23258803:+	RP11-20B7.1	15371	chr3:73918927:+	ONLY_REF_SPLICE	YES	18	0	0.14	1	0.0259	0.0129	UBE2E2->chr3:23244511-23633284:+,ubiquitin_conjugating_enzyme_E2_E2,RP11-20B7.1->chr3:73857752-73952017:+	KPL1_BREAST	0.14	1	0.0388	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ARRB1--KLHL35	2	0	ARRB1	1242	chr11:75062632:-	KLHL35	32400	chr11:75134924:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	LOCAL_REARRANGEMENT:-:[70565],ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,KLHL35->chr11:75133438-75141674:-,kelch_like_family_member_35	KPL1_BREAST	1	1	0.0259	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	BRWD1--LCA5L	2	0	BRWD1	3513	chr21:40684767:-	LCA5L	70372	chr21:40783728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	LOCAL_REARRANGEMENT:-:[84285],BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,LCA5L->Leber_congenital_amaurosis_5-like,chr21:40777770-40817731:-	KPL1_BREAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	BRWD1--LCA5L	1	4	BRWD1	3513	chr21:40684767:-	LCA5L	58370	chr21:40816127:-	ONLY_REF_SPLICE	YES	37	1	0.12	0.83	0.0129	0.0517	LOCAL_REARRANGEMENT:-:[84285],BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,LCA5L->Leber_congenital_amaurosis_5-like,chr21:40777770-40817731:-	KPL1_BREAST	0.12	0.83	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	DDX46--SEC24A	2	0	DDX46	30966	chr5:134169313:+	SEC24A	49620	chr5:134032816:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[30956],DDX46->DEAD-box_helicase_46,chr5:134094469-134190823:+,SEC24A->SEC24_homolog_A,_COPII_coat_complex_component,chr5:133984479-134063513:+	KPL1_BREAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	KPL1_BREAST	1	1	0.0259	TRUE	0	0	0	11	0	TRUE	ACH-000028
KPL1_BREAST	PLCG1--TOP1	2	0	PLCG1	1899	chr20:39766498:+	TOP1	36341	chr20:39741422:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	LOCAL_REARRANGEMENT:+:[12473],PLCG1->chr20:39765600-39811629:+,phospholipase_C_gamma_1,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	KPL1_BREAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	RELA--CFL1	2	0	RELA	1269	chr11:65430297:-	CFL1	17092	chr11:65623713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	RELA->Oncogene{Bushman},RELA_proto-oncogene,_NF-kB_subunit,chr11:65421067-65430565:-,CFL1->chr11:65590493-65629497:-,cofilin_1	KPL1_BREAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	SULF2--PRICKLE2	1	4	SULF2	1782	chr20:46414579:-	PRICKLE2	40949	chr3:64085601:-	ONLY_REF_SPLICE	YES	104	5	0.05	0.5	0.0129	0.0517	SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	KPL1_BREAST	0.05	0.5	0.0646	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	TTC6--RP11-356O9.1	2	0	TTC6	1162	chr14:38065213:+	RP11-356O9.1	56520	chr14:38047909:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	LOCAL_REARRANGEMENT:+:[16722],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,RP11-356O9.1->chr14:38033252-38048330:+	KPL1_BREAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	UNK--ABCA5	1	4	UNK	15037	chr17:73816189:+	ABCA5	24679	chr17:67313964:-	ONLY_REF_SPLICE	NO	41	1	0.11	0.83	0.0129	0.0517	UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-	KPL1_BREAST	0.11	0.83	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	ARRB1--MAP6	1	3	ARRB1	16506	chr11:74983939:-	MAP6	29519	chr11:75319367:-	ONLY_REF_SPLICE	YES	47	0	0.08	1	0.0129	0.0388	ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,MAP6->chr11:75297963-75380165:-,microtubule_associated_protein_6	KPL1_BREAST	0.08	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	BRWD1--LCA5L	1	3	BRWD1	3513	chr21:40684767:-	LCA5L	62828	chr21:40807468:-	ONLY_REF_SPLICE	NO	37	7	0.1	0.36	0.0129	0.0388	LOCAL_REARRANGEMENT:-:[84285],BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,LCA5L->Leber_congenital_amaurosis_5-like,chr21:40777770-40817731:-	KPL1_BREAST	0.1	0.36	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000028
KPL1_BREAST	KCND3--PPM1E	1	3	KCND3	3586	chr1:112524243:-	PPM1E	21898	chr17:57046900:+	ONLY_REF_SPLICE	NO	2	2	0.67	0.67	0.0129	0.0388	KCND3->chr1:112313284-112531777:-,potassium_voltage-gated_channel_subfamily_D_member_3,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	KPL1_BREAST	0.67	0.67	0.0517	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	ATP9A--RP11-347D21.1	1	2	ATP9A	18144	chr20:50255882:-	RP11-347D21.1	40356	chr20:46580501:+	ONLY_REF_SPLICE	NO	293	0	0.01	1	0.0129	0.0259	ATP9A->ATPase_phospholipid_transporting_9A_(putative),chr20:50213053-50385173:-,RP11-347D21.1->chr20:46579543-46580799:+	KPL1_BREAST	0.01	1	0.0388	FALSE	0	0	0	2	0	FALSE	ACH-000028
KPL1_BREAST	CHEK2--XBP1	1	2	CHEK2	10510	chr22:29120965:-	XBP1	28654	chr22:29195141:-	ONLY_REF_SPLICE	YES	22	299	0.12	0.01	0.0129	0.0259	LOCAL_REARRANGEMENT:-:[52133],CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,XBP1->X-box_binding_protein_1,chr22:29190543-29196585:-	KPL1_BREAST	0.01	0.12	0.0388	FALSE	0	1	0	2	0	FALSE	ACH-000028
KPL1_BREAST	CPSF6--CHMP1A	1	2	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	NO	128	426	0.02	0.01	0.0129	0.0259	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	KPL1_BREAST	0.01	0.02	0.0388	FALSE	95	74	6	34	0	FALSE	ACH-000028
KPL1_BREAST	NAV1--GPR37L1	1	2	NAV1	8635	chr1:201708972:+	GPR37L1	49629	chr1:202096869:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0.0259	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,GPR37L1->G_protein-coupled_receptor_37_like_1,chr1:202091986-202102720:+	KPL1_BREAST	1	1	0.0388	TRUE	0	0	0	2	0	TRUE	ACH-000028
KPL1_BREAST	RAD51C--ATXN7	1	2	RAD51C	9027	chr17:56787351:+	ATXN7	25577	chr3:63965591:+	ONLY_REF_SPLICE	YES	242	37	0.01	0.07	0.0129	0.0259	RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+,ATXN7->ataxin_7,chr3:63850233-63989138:+	KPL1_BREAST	0.01	0.07	0.0388	FALSE	0	0	0	1	0	FALSE	ACH-000028
KPL1_BREAST	AC005037.3--NIF3L1	1	1	AC005037.3	1368	chr2:201828353:+	NIF3L1	11906	chr2:201759987:+	ONLY_REF_SPLICE	NO	0	95	1	0.02	0.0129	0.0129	LOCAL_REARRANGEMENT:+:[59331],AC005037.3->chr2:201827986-201873825:+,NIF3L1->NGG1_interacting_factor_3_like_1,chr2:201754050-201768655:+	KPL1_BREAST	0.02	1	0.0258	TRUE	0	0	0	1	0	FALSE	ACH-000028
KPL1_BREAST	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	22	0	0.08	1	0.0129	0.0129	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	KPL1_BREAST	0.08	1	0.0258	FALSE	118	557	29	88	0	FALSE	ACH-000028
KPL1_BREAST	EFCAB11--RP11-944C7.1	1	1	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	41	0	0.05	1	0.0129	0.0129	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	KPL1_BREAST	0.05	1	0.0258	TRUE	31	91	1	18	0	FALSE	ACH-000028
KPL1_BREAST	ELP2--SLC39A6	1	1	ELP2	2707	chr18:33713279:+	SLC39A6	38662	chr18:33694437:-	ONLY_REF_SPLICE	YES	275	1049	0.01	0	0.0129	0.0129	LOCAL_INVERSION:+:-:[59],ELP2->chr18:33709407-33757909:+,elongator_acetyltransferase_complex_subunit_2,SLC39A6->Oncogene{Bushman},chr18:33688495-33709348:-,solute_carrier_family_39_member_6	KPL1_BREAST	0	0.01	0.0258	FALSE	0	0	0	2	0	FALSE	ACH-000028
KPL1_BREAST	MDM2--NUP107	1	1	MDM2	6424	chr12:69210725:+	NUP107	24245	chr12:69082742:+	ONLY_REF_SPLICE	NO	78	11	0.03	0.15	0.0129	0.0129	LOCAL_REARRANGEMENT:+:[65171],MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa	KPL1_BREAST	0.03	0.15	0.0258	TRUE	0	0	0	1	0	FALSE	ACH-000028
KPL1_BREAST	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0129	0.0129	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KPL1_BREAST	0.2	1	0.0258	FALSE	125	705	46	456	0	FALSE	ACH-000028
KPL1_BREAST	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0129	0.0129	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KPL1_BREAST	1	1	0.0258	FALSE	16	356	14	466	0	FALSE	ACH-000028
KPL1_BREAST	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0129	0.0129	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KPL1_BREAST	1	1	0.0258	FALSE	93	270	15	244	0	FALSE	ACH-000028
KPL1_BREAST	RSBN1--DCLRE1B	1	1	RSBN1	1767	chr1:114354332:-	DCLRE1B	20548	chr1:114453753:+	ONLY_REF_SPLICE	YES	27	152	0.07	0.01	0.0129	0.0129	LOCAL_INVERSION:-:+:[92665],RSBN1->chr1:114304454-114355098:-,round_spermatid_basic_protein_1,DCLRE1B->DNA_cross-link_repair_1B,chr1:114447763-114456708:+	KPL1_BREAST	0.01	0.07	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000028
MDAMB436_BREAST	PDAP1--PTCD1	252	133	PDAP1	5873	chr7:98995485:-	PTCD1	23274	chr7:99021580:-	ONLY_REF_SPLICE	YES	640	24	0.38	0.94	3.3898	1.7891	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[7910],PDAP1->PDGFA_associated_protein_1,chr7:98989671-99006452:-,PTCD1->chr7:99014362-99063787:-,pentatricopeptide_repeat_domain_1	MDAMB436_BREAST	0.38	0.94	5.1789	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	PRDX3--PTEN	272	0	PRDX3	1079	chr10:120938267:-	PTEN	17754	chr10:89685270:+	ONLY_REF_SPLICE	YES	0	0	1	1	3.6588	0	PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3,PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog	MDAMB436_BREAST	1	1	3.6588	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	STXBP4--TOM1L1	205	0	STXBP4	1089	chr17:53046176:+	TOM1L1	49954	chr17:53037927:+	ONLY_REF_SPLICE	YES	0	0	1	1	2.7576	0	LOCAL_REARRANGEMENT:+:[6778],STXBP4->chr17:53046088-53241646:+,syntaxin_binding_protein_4,TOM1L1->chr17:52976748-53039310:+,target_of_myb1_like_1_membrane_trafficking_protein	MDAMB436_BREAST	1	1	2.7576	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TIMM23B--LINC00843	186	56	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	2.502	0.7533	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MDAMB436_BREAST	1	1	3.2553	TRUE	508	994	45	981	0	FALSE	ACH-000573
MDAMB436_BREAST	CELF1--C1QTNF4	189	1	CELF1	3345	chr11:47574544:-	C1QTNF4	31973	chr11:47615883:-	INCL_NON_REF_SPLICE	YES	90	0	0.68	1	2.5423	0.0135	LOCAL_REARRANGEMENT:-:[24095],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,C1QTNF4->C1q_and_tumor_necrosis_factor_related_protein_4,chr11:47611216-47616211:-	MDAMB436_BREAST	0.68	1	2.5558	TRUE	0	1	0	1	1	TRUE	ACH-000573
MDAMB436_BREAST	TYRO3--RTF1	171	65	TYRO3	5299	chr15:41854916:+	RTF1	30784	chr15:41762455:+	ONLY_REF_SPLICE	YES	35	88	0.87	0.73	2.3002	0.8743	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[74112],TYRO3->Oncogene{Bushman},TYRO3_protein_tyrosine_kinase,chr15:41849873-41871536:+,RTF1->RTF1_homolog,_Paf1/RNA_polymerase_II_complex_component,chr15:41700606-41775761:+	MDAMB436_BREAST	0.73	0.87	3.1745	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CELF1--C1QTNF4	150	79	CELF1	3345	chr11:47574544:-	C1QTNF4	31749	chr11:47616107:-	INCL_NON_REF_SPLICE	YES	90	1	0.72	1	2.0177	1.0627	LOCAL_REARRANGEMENT:-:[24095],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,C1QTNF4->C1q_and_tumor_necrosis_factor_related_protein_4,chr11:47611216-47616211:-	MDAMB436_BREAST	0.72	1	3.0804	TRUE	0	1	0	1	1	TRUE	ACH-000573
MDAMB436_BREAST	MFSD1--RSRC1	139	97	MFSD1	5342	chr3:158520104:+	RSRC1	39568	chr3:158178724:+	ONLY_REF_SPLICE	YES	90	45	0.72	0.84	1.8698	1.3048	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Breast=1},MFSD1->chr3:158449987-158547508:+,major_facilitator_superfamily_domain_containing_1,RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+	MDAMB436_BREAST	0.72	0.84	3.1746	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TIAL1--MCMBP	141	47	TIAL1	5189	chr10:121347664:-	MCMBP	21488	chr10:121619396:-	ONLY_REF_SPLICE	YES	74	11	0.72	0.94	1.8967	0.6322	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-,MCMBP->chr10:121588972-121652068:-,minichromosome_maintenance_complex_binding_protein	MDAMB436_BREAST	0.72	0.94	2.5289	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	PDAP1--PTCD1	101	145	PDAP1	7238	chr7:98993999:-	PTCD1	23274	chr7:99021580:-	INCL_NON_REF_SPLICE	YES	52	24	0.83	0.91	1.3586	1.9505	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[7910],PDAP1->PDGFA_associated_protein_1,chr7:98989671-99006452:-,PTCD1->chr7:99014362-99063787:-,pentatricopeptide_repeat_domain_1	MDAMB436_BREAST	0.83	0.91	3.3091	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	PKN3--SET	96	61	PKN3	4465	chr9:131469629:+	SET	24812	chr9:131457961:+	INCL_NON_REF_SPLICE	YES	88	189	0.64	0.45	1.2913	0.8205	LOCAL_REARRANGEMENT:+:[6123],PKN3->chr9:131464802-131483197:+,protein_kinase_N3,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MDAMB436_BREAST	0.45	0.64	2.1118	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TIMM23--RP11-464F9.1	108	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	337	7	0.25	0.94	1.4528	0.0807	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MDAMB436_BREAST	0.25	0.94	1.5335	TRUE	519	3926	326	965	0	FALSE	ACH-000573
MDAMB436_BREAST	EXOSC10--MTOR	94	34	EXOSC10	2298	chr1:11158077:-	MTOR	76385	chr1:11169786:-	ONLY_REF_SPLICE	YES	69	56	0.65	0.7	1.2644	0.4574	LOCAL_REARRANGEMENT:-:[6654],EXOSC10->chr1:11126675-11159938:-,exosome_component_10,MTOR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:11166592-11322564:-,mechanistic_target_of_rapamycin	MDAMB436_BREAST	0.65	0.7	1.7218	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CTD-2547E10.2--CTB-31N19.2	92	28	CTD-2547E10.2	9565	chr16:21487920:-	CTB-31N19.2	36456	chr16:21544409:-	ONLY_REF_SPLICE	YES	50	0	0.71	1	1.2375	0.3766	LOCAL_REARRANGEMENT:-:[12501],CTD-2547E10.2->chr16:21458004-21531765:-,CTB-31N19.2->chr16:21544266-21561694:-	MDAMB436_BREAST	0.71	1	1.6141	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	RIMS2--ATP6V1C1	90	17	RIMS2	1315	chr8:104513290:+	ATP6V1C1	58458	chr8:104075183:+	ONLY_REF_SPLICE	YES	2	97	0.98	0.52	1.2106	0.2287	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Breast=1},RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+	MDAMB436_BREAST	0.52	0.98	1.4393	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SLC22A23--PHACTR2	85	19	SLC22A23	8751	chr6:3410422:-	PHACTR2	45326	chr6:144128194:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	1.1434	0.2556	SLC22A23->Oncogene{Bushman},chr6:3269196-3457256:-,solute_carrier_family_22_member_23,PHACTR2->chr6:143857982-144152322:+,phosphatase_and_actin_regulator_2	MDAMB436_BREAST	0.99	1	1.399	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	C12orf49--ATP10A	86	7	C12orf49	1281	chr12:117175595:-	ATP10A	29019	chr15:25940293:-	ONLY_REF_SPLICE	YES	11	0	0.89	1	1.1568	0.0942	{Klijn_CCL:Breast=1},C12orf49->chr12:117153593-117175875:-,chromosome_12_open_reading_frame_49,ATP10A->ATPase_phospholipid_transporting_10A_(putative),chr15:25922420-26110317:-	MDAMB436_BREAST	0.89	1	1.251	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SPTAN1--GLE1	67	25	SPTAN1	2990	chr9:131329256:+	GLE1	57746	chr9:131296040:+	ONLY_REF_SPLICE	YES	92	89	0.5	0.51	0.9013	0.3363	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[10299],SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	MDAMB436_BREAST	0.5	0.51	1.2376	TRUE	0	0	0	2	0	TRUE	ACH-000573
MDAMB436_BREAST	SNRPD3--UPB1	52	38	SNRPD3	2713	chr22:24953768:+	UPB1	27915	chr22:24919587:+	ONLY_REF_SPLICE	YES	427	5	0.17	0.95	0.6995	0.5112	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[27113],SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide,UPB1->chr22:24863206-24924358:+,ureidopropionase,_beta	MDAMB436_BREAST	0.17	0.95	1.2107	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	MT-TA--MT-TN	61	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8205	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB436_BREAST	1	1	0.8205	FALSE	369	2501	205	193	0	FALSE	ACH-000573
MDAMB436_BREAST	UVRAG--MOGAT2	49	28	UVRAG	15547	chr11:75694557:+	MOGAT2	33153	chr11:75431037:+	ONLY_REF_SPLICE	YES	21	0	0.79	1	0.6591	0.3766	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[82209],UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,MOGAT2->chr11:75428864-75444003:+,monoacylglycerol_O-acyltransferase_2	MDAMB436_BREAST	0.79	1	1.0357	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	RBPMS2--LINC00686	50	5	RBPMS2	4559	chr15:65042542:-	LINC00686	12927	chr20:61326615:-	ONLY_REF_SPLICE	YES	17	0	0.76	1	0.6726	0.0673	RBPMS2->RNA_binding_protein_with_multiple_splicing_2,chr15:65032091-65067786:-,LINC00686->chr20:61326376-61331832:-,long_intergenic_non-protein_coding_RNA_686	MDAMB436_BREAST	0.76	1	0.7399	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	USP3--NTSR1	43	17	USP3	9169	chr15:63829355:+	NTSR1	33034	chr20:61386037:+	ONLY_REF_SPLICE	YES	31	3	0.66	0.95	0.5784	0.2287	USP3->Oncogene{Bushman},chr15:63796793-63886839:+,ubiquitin_specific_peptidase_3,NTSR1->chr20:61340189-61394123:+,neurotensin_receptor_1_(high_affinity)	MDAMB436_BREAST	0.66	0.95	0.8071	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	KIRREL--P2RX1	45	8	KIRREL	1456	chr1:157963518:+	P2RX1	25436	chr17:3806637:-	ONLY_REF_SPLICE	YES	31	0	0.63	1	0.6053	0.1076	KIRREL->chr1:157963063-158070052:+,kin_of_IRRE_like_(Drosophila),P2RX1->chr17:3799886-3819794:-,purinergic_receptor_P2X_1	MDAMB436_BREAST	0.63	1	0.7129	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ZNF609--RBPMS2	46	1	ZNF609	7090	chr15:64915251:+	RBPMS2	27589	chr15:65043837:-	ONLY_REF_SPLICE	YES	36	14	0.57	0.77	0.6188	0.0135	LOCAL_INVERSION:+:-:[53827],ZNF609->chr15:64752941-64978264:+,zinc_finger_protein_609,RBPMS2->RNA_binding_protein_with_multiple_splicing_2,chr15:65032091-65067786:-	MDAMB436_BREAST	0.57	0.77	0.6323	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	MT-TA--MT-TC	38	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5112	0.0269	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB436_BREAST	1	1	0.5381	FALSE	462	80	0	856	0	FALSE	ACH-000573
MDAMB436_BREAST	MT-ND6--MT-TE	36	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4843	0.0538	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB436_BREAST	1	1	0.5381	FALSE	499	1288	110	792	0	FALSE	ACH-000573
MDAMB436_BREAST	PDAP1--PTCD1	3	134	PDAP1	7238	chr7:98993999:-	PTCD1	23277	chr7:99021577:-	INCL_NON_REF_SPLICE	YES	52	23	0.72	0.86	0.0404	1.8025	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[7910],PDAP1->PDGFA_associated_protein_1,chr7:98989671-99006452:-,PTCD1->chr7:99014362-99063787:-,pentatricopeptide_repeat_domain_1	MDAMB436_BREAST	0.72	0.86	1.8429	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ANKRD13A--TCHP	34	6	ANKRD13A	1599	chr12:110437589:+	TCHP	46249	chr12:110418710:+	ONLY_REF_SPLICE	YES	16	3	0.71	0.93	0.4574	0.0807	LOCAL_REARRANGEMENT:+:[15345],ANKRD13A->ankyrin_repeat_domain_13A,chr12:110436991-110477568:+,TCHP->chr12:110338069-110421646:+,trichoplein_keratin_filament_binding	MDAMB436_BREAST	0.71	0.93	0.5381	TRUE	0	2	0	1	2	TRUE	ACH-000573
MDAMB436_BREAST	KANSL1--ARL17B	32	13	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	16	17	0.74	0.73	0.4304	0.1749	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	MDAMB436_BREAST	0.73	0.74	0.6053	TRUE	181	1564	124	196	0	FALSE	ACH-000573
MDAMB436_BREAST	PDAP1--PTCD1	4	122	PDAP1	5873	chr7:98995485:-	PTCD1	23277	chr7:99021577:-	INCL_NON_REF_SPLICE	YES	640	23	0.16	0.85	0.0538	1.6411	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[7910],PDAP1->PDGFA_associated_protein_1,chr7:98989671-99006452:-,PTCD1->chr7:99014362-99063787:-,pentatricopeptide_repeat_domain_1	MDAMB436_BREAST	0.16	0.85	1.6949	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TNFAIP8--DMXL1	30	15	TNFAIP8	1216	chr5:118604602:+	DMXL1	70520	chr5:118576114:+	ONLY_REF_SPLICE	YES	23	10	0.66	0.82	0.4035	0.2018	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_REARRANGEMENT:+:[19554],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,DMXL1->Dmx_like_1,chr5:118373467-118584833:+	MDAMB436_BREAST	0.66	0.82	0.6053	TRUE	0	1	0	1	1	TRUE	ACH-000573
MDAMB436_BREAST	USP34--XPO1	29	13	USP34	19239	chr2:61558411:-	XPO1	85339	chr2:61729445:-	ONLY_REF_SPLICE	YES	21	175	0.67	0.19	0.3901	0.1749	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	MDAMB436_BREAST	0.19	0.67	0.565	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TAF1C--KCNG4	29	5	TAF1C	1163	chr16:84220507:-	KCNG4	17023	chr16:84256626:-	ONLY_REF_SPLICE	YES	55	0	0.38	1	0.3901	0.0673	LOCAL_REARRANGEMENT:-:[35154],TAF1C->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_C,chr16:84211458-84220669:-,KCNG4->chr16:84255823-84273356:-,potassium_voltage-gated_channel_modifier_subfamily_G_member_4	MDAMB436_BREAST	0.38	1	0.4574	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CELF1--C1QTNF4	10	80	CELF1	3345	chr11:47574544:-	C1QTNF4	31647	chr11:47616209:-	INCL_NON_REF_SPLICE	YES	90	0	0.5	1	0.1345	1.0761	LOCAL_REARRANGEMENT:-:[24095],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,C1QTNF4->C1q_and_tumor_necrosis_factor_related_protein_4,chr11:47611216-47616211:-	MDAMB436_BREAST	0.5	1	1.2106	TRUE	0	1	0	1	1	TRUE	ACH-000573
MDAMB436_BREAST	SPTAN1--GLE1	18	32	SPTAN1	2990	chr9:131329256:+	GLE1	57498	chr9:131295792:+	ONLY_REF_SPLICE	YES	92	73	0.35	0.41	0.2421	0.4304	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[10299],SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	MDAMB436_BREAST	0.35	0.41	0.6725	TRUE	0	0	0	2	0	TRUE	ACH-000573
MDAMB436_BREAST	MFSD1--RSRC1	1	98	MFSD1	5642	chr3:158520404:+	RSRC1	39568	chr3:158178724:+	ONLY_REF_SPLICE	YES	106	45	0.48	0.69	0.0135	1.3183	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Breast=1},MFSD1->chr3:158449987-158547508:+,major_facilitator_superfamily_domain_containing_1,RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+	MDAMB436_BREAST	0.48	0.69	1.3318	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CHD2--NUP85	23	8	CHD2	9554	chr15:93448238:+	NUP85	69059	chr17:73221793:+	ONLY_REF_SPLICE	YES	31	71	0.5	0.3	0.3094	0.1076	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,NUP85->chr17:73201754-73231853:+,nucleoporin_85	MDAMB436_BREAST	0.3	0.5	0.417	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SNRPD3--UPB1	13	43	SNRPD3	2713	chr22:24953768:+	UPB1	26872	chr22:24917954:+	ONLY_REF_SPLICE	YES	427	0	0.12	1	0.1749	0.5784	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[27113],SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide,UPB1->chr22:24863206-24924358:+,ureidopropionase,_beta	MDAMB436_BREAST	0.12	1	0.7533	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	PDAP1--PTCD1	3	76	PDAP1	5873	chr7:98995485:-	PTCD1	23309	chr7:99021545:-	INCL_NON_REF_SPLICE	YES	640	18	0.11	0.81	0.0404	1.0223	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[7910],PDAP1->PDGFA_associated_protein_1,chr7:98989671-99006452:-,PTCD1->chr7:99014362-99063787:-,pentatricopeptide_repeat_domain_1	MDAMB436_BREAST	0.11	0.81	1.0627	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	RP11-680G10.1--GSE1	20	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.269	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MDAMB436_BREAST	1	1	0.269	TRUE	465	1949	224	605	0	FALSE	ACH-000573
MDAMB436_BREAST	IARS--NOL8	19	0	IARS	1146	chr9:95055893:-	NOL8	56863	chr9:95061236:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2556	0	LOCAL_REARRANGEMENT:-:[3602],IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase,NOL8->chr9:95059640-95087918:-,nucleolar_protein_8	MDAMB436_BREAST	1	1	0.2556	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	MT-TA--MT-TN	8	42	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1076	0.565	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB436_BREAST	1	1	0.6726	FALSE	369	2501	205	193	0	FALSE	ACH-000573
MDAMB436_BREAST	TNFAIP8--DMXL1	12	25	TNFAIP8	2334	chr5:118651997:+	DMXL1	68335	chr5:118573017:+	ONLY_REF_SPLICE	YES	26	5	0.59	0.88	0.1614	0.3363	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_REARRANGEMENT:+:[19554],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,DMXL1->Dmx_like_1,chr5:118373467-118584833:+	MDAMB436_BREAST	0.59	0.88	0.4977	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SMG1P1--CA5A	18	0	SMG1P1	8133	chr16:22473655:+	CA5A	38327	chr16:87921878:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2421	0	SMG1P1->SMG1_pseudogene_1,chr16:22448329-22503541:+,CA5A->carbonic_anhydrase_5A,chr16:87921625-87970135:-	MDAMB436_BREAST	1	1	0.2421	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	C15orf57--CBX3	14	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	34	47	0.44	0.36	0.1883	0.1749	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MDAMB436_BREAST	0.36	0.44	0.3632	TRUE	267	562	48	632	0	FALSE	ACH-000573
MDAMB436_BREAST	RP11-680G10.1--GSE1	16	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	17	1	0.5	0.2152	0.0135	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MDAMB436_BREAST	0.5	1	0.2287	TRUE	458	1351	185	561	0	FALSE	ACH-000573
MDAMB436_BREAST	MT-ND6--MT-TE	12	14	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.1614	0.1883	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB436_BREAST	0.93	1	0.3497	FALSE	499	1288	110	792	0	FALSE	ACH-000573
MDAMB436_BREAST	LYST--TMLHE	14	5	LYST	59768	chr1:235872391:-	TMLHE	76532	chrX:154774938:-	ONLY_REF_SPLICE	YES	11	28	0.63	0.4	0.1883	0.0673	LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator,TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon	MDAMB436_BREAST	0.4	0.63	0.2556	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	MT-TA--MT-TN	15	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2018	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB436_BREAST	1	1	0.2018	FALSE	369	2501	205	193	0	FALSE	ACH-000573
MDAMB436_BREAST	TMEM182--IL18R1	13	7	TMEM182	5940	chr2:103380886:+	IL18R1	19533	chr2:102979093:+	ONLY_REF_SPLICE	YES	21	5	0.49	0.8	0.1749	0.0942	TMEM182->chr2:103353367-103460352:+,transmembrane_protein_182,IL18R1->chr2:102927989-103015218:+,interleukin_18_receptor_1	MDAMB436_BREAST	0.49	0.8	0.2691	TRUE	0	1	0	1	1	TRUE	ACH-000573
MDAMB436_BREAST	RP11-31F15.1--WNT2B	14	2	RP11-31F15.1	3407	chr1:113503197:+	WNT2B	13080	chr1:113033633:+	ONLY_REF_SPLICE	YES	5	0	0.76	1	0.1883	0.0269	RP11-31F15.1->chr1:113499037-113542118:+,WNT2B->Wnt_family_member_2B,chr1:113009163-113072787:+	MDAMB436_BREAST	0.76	1	0.2152	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	MT-TA--MT-TN	14	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1883	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB436_BREAST	1	1	0.1883	FALSE	369	2501	205	193	0	FALSE	ACH-000573
MDAMB436_BREAST	RP11-123O10.4--GRIP1	13	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1749	0.0135	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MDAMB436_BREAST	1	1	0.1884	FALSE	416	2512	207	587	0	FALSE	ACH-000573
MDAMB436_BREAST	HERC1--RBPMS2	12	4	HERC1	1121	chr15:64126021:-	RBPMS2	89930	chr15:65043837:-	ONLY_REF_SPLICE	YES	10	14	0.62	0.53	0.1614	0.0538	HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,RBPMS2->RNA_binding_protein_with_multiple_splicing_2,chr15:65032091-65067786:-	MDAMB436_BREAST	0.53	0.62	0.2152	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	MT-TA--MT-TN	3	39	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0.5246	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB436_BREAST	1	1	0.565	FALSE	369	2501	205	193	0	FALSE	ACH-000573
MDAMB436_BREAST	SNRPD3--UPB1	10	11	SNRPD3	2713	chr22:24953768:+	UPB1	29070	chr22:24921679:+	ONLY_REF_SPLICE	YES	427	30	0.05	0.41	0.1345	0.148	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[27113],SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide,UPB1->chr22:24863206-24924358:+,ureidopropionase,_beta	MDAMB436_BREAST	0.05	0.41	0.2825	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	STRN--SULT1C2	12	3	STRN	1243	chr2:37193373:-	SULT1C2	37581	chr2:108921030:+	ONLY_REF_SPLICE	YES	3	30	0.83	0.33	0.1614	0.0404	STRN->Oncogene{Bushman},chr2:37070783-37193615:-,striatin,SULT1C2->chr2:108905095-108926371:+,sulfotransferase_family_1C_member_2	MDAMB436_BREAST	0.33	0.83	0.2018	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ANKHD1--B4GALT4-AS1	12	2	ANKHD1	23891	chr5:139887583:+	B4GALT4-AS1	47717	chr3:119009488:+	ONLY_REF_SPLICE	YES	14	0	0.5	1	0.1614	0.0269	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,B4GALT4-AS1->B4GALT4_antisense_RNA_1,chr3:118945333-119009513:+	MDAMB436_BREAST	0.5	1	0.1883	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	HERC1--RBPMS2	11	4	HERC1	1116	chr15:64126026:-	RBPMS2	89930	chr15:65043837:-	ONLY_REF_SPLICE	YES	9	14	0.62	0.52	0.148	0.0538	HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,RBPMS2->RNA_binding_protein_with_multiple_splicing_2,chr15:65032091-65067786:-	MDAMB436_BREAST	0.52	0.62	0.2018	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	PHACTR2--SLC22A23	11	4	PHACTR2	17181	chr6:144110047:+	SLC22A23	40320	chr6:3324236:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.148	0.0538	PHACTR2->chr6:143857982-144152322:+,phosphatase_and_actin_regulator_2,SLC22A23->Oncogene{Bushman},chr6:3269196-3457256:-,solute_carrier_family_22_member_23	MDAMB436_BREAST	0.94	1	0.2018	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	MT-ND6--MT-TE	3	35	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0404	0.4708	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB436_BREAST	0.97	1	0.5112	FALSE	499	1288	110	792	0	FALSE	ACH-000573
MDAMB436_BREAST	MAMDC4--C9orf172	11	1	MAMDC4	1148	chr9:139745542:+	C9orf172	15488	chr9:139740499:+	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.148	0.0135	LOCAL_REARRANGEMENT:+:[3598],MAMDC4->MAM_domain_containing_4,Oncogene{Bushman},chr9:139745395-139755249:+,C9orf172->chr9:139738867-139741797:+,chromosome_9_open_reading_frame_172	MDAMB436_BREAST	0.92	1	0.1615	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	MT-TA--MT-TN	4	29	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0.3901	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB436_BREAST	1	1	0.4439	FALSE	369	2501	205	193	0	FALSE	ACH-000573
MDAMB436_BREAST	SPRY4--DPYSL3	11	1	SPRY4	2611	chr5:141704409:-	DPYSL3	18367	chr5:146804526:-	ONLY_REF_SPLICE	YES	22	345	0.35	0.03	0.148	0.0135	SPRY4->chr5:141689992-141706020:-,sprouty_RTK_signaling_antagonist_4,DPYSL3->chr5:146770374-146889619:-,dihydropyrimidinase_like_3	MDAMB436_BREAST	0.03	0.35	0.1615	TRUE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.148	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MDAMB436_BREAST	1	1	0.148	TRUE	0	0	0	434	0	FALSE	ACH-000573
MDAMB436_BREAST	TRIM44--PDHX	10	4	TRIM44	1976	chr11:35685328:+	PDHX	27072	chr11:35041755:+	ONLY_REF_SPLICE	YES	138	5	0.09	0.74	0.1345	0.0538	TRIM44->chr11:35684353-35829775:+,tripartite_motif_containing_44,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	MDAMB436_BREAST	0.09	0.74	0.1883	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TNFAIP8--DMXL1	6	19	TNFAIP8	1216	chr5:118604602:+	DMXL1	68335	chr5:118573017:+	ONLY_REF_SPLICE	YES	23	5	0.52	0.83	0.0807	0.2556	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_REARRANGEMENT:+:[19554],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,DMXL1->Dmx_like_1,chr5:118373467-118584833:+	MDAMB436_BREAST	0.52	0.83	0.3363	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	MT-TA--MT-TC	10	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1345	0.0269	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB436_BREAST	1	1	0.1614	FALSE	462	80	0	856	0	FALSE	ACH-000573
MDAMB436_BREAST	NIPBL--RP11-159F24.6	8	10	NIPBL	9318	chr5:36972143:+	RP11-159F24.6	56730	chr5:43521660:+	ONLY_REF_SPLICE	YES	27	0	0.4	1	0.1076	0.1345	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,RP11-159F24.6->chr5:43511160-43521913:+	MDAMB436_BREAST	0.4	1	0.2421	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SLC7A5--CA5A	10	2	SLC7A5	3780	chr16:87885330:-	CA5A	24129	chr16:87925560:-	ONLY_REF_SPLICE	YES	225	0	0.05	1	0.1345	0.0269	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[18531],SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,CA5A->carbonic_anhydrase_5A,chr16:87921625-87970135:-	MDAMB436_BREAST	0.05	1	0.1614	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ZUFSP--RP11-257K9.8	10	1	ZUFSP	11026	chr6:116966877:-	RP11-257K9.8	22032	chr6:73919803:-	ONLY_REF_SPLICE	YES	7	0	0.61	1	0.1345	0.0135	ZUFSP->chr6:116956781-116989957:-,zinc_finger_with_UFM1_specific_peptidase_domain,RP11-257K9.8->chr6:73919469-73972919:-	MDAMB436_BREAST	0.61	1	0.148	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	MT-ND6--MT-TE	9	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1211	0.0538	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB436_BREAST	1	1	0.1749	FALSE	499	1288	110	792	0	FALSE	ACH-000573
MDAMB436_BREAST	PTEN--PRDX3	9	4	PTEN	4898	chr10:89653866:+	PRDX3	26161	chr10:120933384:-	ONLY_REF_SPLICE	YES	1	304	0.93	0.04	0.1211	0.0538	{Klijn_CCL:Breast=1},PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog,PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3	MDAMB436_BREAST	0.04	0.93	0.1749	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	MT-ND6--MT-TE	3	26	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0404	0.3497	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB436_BREAST	0.97	1	0.3901	FALSE	499	1288	110	792	0	FALSE	ACH-000573
MDAMB436_BREAST	PHACTR4--ACTA2	8	6	PHACTR4	2277	chr1:28733974:+	ACTA2	29331	chr10:90708710:-	ONLY_REF_SPLICE	YES	23	6	0.38	0.7	0.1076	0.0807	PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4,ACTA2->actin,_alpha_2,_smooth_muscle,_aorta,chr10:90694831-90751147:-	MDAMB436_BREAST	0.38	0.7	0.1883	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ANKRD13A--TCHP	9	1	ANKRD13A	1134	chr12:110437124:+	TCHP	46249	chr12:110418710:+	ONLY_REF_SPLICE	YES	1	3	0.91	0.77	0.1211	0.0135	LOCAL_REARRANGEMENT:+:[15345],ANKRD13A->ankyrin_repeat_domain_13A,chr12:110436991-110477568:+,TCHP->chr12:110338069-110421646:+,trichoplein_keratin_filament_binding	MDAMB436_BREAST	0.77	0.91	0.1346	TRUE	0	2	0	1	2	TRUE	ACH-000573
MDAMB436_BREAST	RABGEF1--WBSCR17	9	0	RABGEF1	1095	chr7:66147245:+	WBSCR17	35856	chr7:71130396:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1211	0	RABGEF1->RAB_guanine_nucleotide_exchange_factor_1,chr7:66147151-66276451:+,WBSCR17->Williams-Beuren_syndrome_chromosome_region_17,chr7:70597155-71178585:+	MDAMB436_BREAST	1	1	0.1211	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	MT-TA--MT-TN	7	7	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0942	0.0942	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB436_BREAST	1	1	0.1884	FALSE	369	2501	205	193	0	FALSE	ACH-000573
MDAMB436_BREAST	TNFAIP8--DMXL1	5	15	TNFAIP8	1216	chr5:118604602:+	DMXL1	69428	chr5:118574684:+	ONLY_REF_SPLICE	YES	23	6	0.47	0.77	0.0673	0.2018	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_REARRANGEMENT:+:[19554],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,DMXL1->Dmx_like_1,chr5:118373467-118584833:+	MDAMB436_BREAST	0.47	0.77	0.2691	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	C15orf57--CBX3	6	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	31	47	0.34	0.25	0.0807	0.1345	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MDAMB436_BREAST	0.25	0.34	0.2152	TRUE	267	562	48	632	0	FALSE	ACH-000573
MDAMB436_BREAST	USP3--NTSR1	7	6	USP3	1237	chr15:63797029:+	NTSR1	33034	chr20:61386037:+	ONLY_REF_SPLICE	YES	61	3	0.18	0.81	0.0942	0.0807	USP3->Oncogene{Bushman},chr15:63796793-63886839:+,ubiquitin_specific_peptidase_3,NTSR1->chr20:61340189-61394123:+,neurotensin_receptor_1_(high_affinity)	MDAMB436_BREAST	0.18	0.81	0.1749	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	HSP90AB1--MT-RNR2	8	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1960	0	0	1	0.1076	0.0135	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MDAMB436_BREAST	0	1	0.1211	FALSE	13	9	0	364	0	FALSE	ACH-000573
MDAMB436_BREAST	C12orf49--ATP10A	8	0	C12orf49	1281	chr12:117175595:-	ATP10A	30347	chr15:25936938:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1076	0	{Klijn_CCL:Breast=1},C12orf49->chr12:117153593-117175875:-,chromosome_12_open_reading_frame_49,ATP10A->ATPase_phospholipid_transporting_10A_(putative),chr15:25922420-26110317:-	MDAMB436_BREAST	1	1	0.1076	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	HIBADH--JAZF1	7	1	HIBADH	6024	chr7:27668990:-	JAZF1	21404	chr7:27935035:-	ONLY_REF_SPLICE	YES	94	9	0.08	0.47	0.0942	0.0135	HIBADH->3-hydroxyisobutyrate_dehydrogenase,chr7:27565061-27702614:-,JAZF1->JAZF_zinc_finger_1,Oncogene{Bushman},chr7:27870192-28220362:-	MDAMB436_BREAST	0.08	0.47	0.1077	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0942	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	MDAMB436_BREAST	1	1	0.0942	TRUE	1	39	0	134	39	FALSE	ACH-000573
MDAMB436_BREAST	THRAP3--ICA1	7	0	THRAP3	1090	chr1:36690106:+	ICA1	30811	chr7:8198282:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0942	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,ICA1->chr7:8152814-8302317:-,islet_cell_autoantigen_1	MDAMB436_BREAST	1	1	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SPTAN1--GLE1	5	7	SPTAN1	2990	chr9:131329256:+	GLE1	57908	chr9:131296202:+	INCL_NON_REF_SPLICE	YES	92	101	0.12	0.11	0.0673	0.0942	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[10299],SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	MDAMB436_BREAST	0.11	0.12	0.1615	TRUE	0	0	0	2	0	TRUE	ACH-000573
MDAMB436_BREAST	HERC1--ZNF609	6	2	HERC1	28423	chr15:63998979:-	ZNF609	96955	chr15:64962545:+	ONLY_REF_SPLICE	YES	8	34	0.5	0.19	0.0807	0.0269	HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,ZNF609->chr15:64752941-64978264:+,zinc_finger_protein_609	MDAMB436_BREAST	0.19	0.5	0.1076	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CELF1--C1QTNF4	5	5	CELF1	3345	chr11:47574544:-	C1QTNF4	31923	chr11:47615933:-	INCL_NON_REF_SPLICE	YES	90	5	0.1	0.67	0.0673	0.0673	LOCAL_REARRANGEMENT:-:[24095],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,C1QTNF4->C1q_and_tumor_necrosis_factor_related_protein_4,chr11:47611216-47616211:-	MDAMB436_BREAST	0.1	0.67	0.1346	TRUE	0	1	0	1	1	TRUE	ACH-000573
MDAMB436_BREAST	RABGEF1--WBSCR17	6	1	RABGEF1	2153	chr7:66177211:+	WBSCR17	35856	chr7:71130396:+	ONLY_REF_SPLICE	YES	1	10	0.88	0.41	0.0807	0.0135	RABGEF1->RAB_guanine_nucleotide_exchange_factor_1,chr7:66147151-66276451:+,WBSCR17->Williams-Beuren_syndrome_chromosome_region_17,chr7:70597155-71178585:+	MDAMB436_BREAST	0.41	0.88	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CELF1--C1QTNF4	6	0	CELF1	3345	chr11:47574544:-	C1QTNF4	31996	chr11:47615860:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0807	0	LOCAL_REARRANGEMENT:-:[24095],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,C1QTNF4->C1q_and_tumor_necrosis_factor_related_protein_4,chr11:47611216-47616211:-	MDAMB436_BREAST	1	1	0.0807	TRUE	0	1	0	1	1	TRUE	ACH-000573
MDAMB436_BREAST	RBMS3--CX3CR1	6	0	RBMS3	5193	chr3:29628696:+	CX3CR1	35135	chr3:39308009:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0807	0	RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+,CX3CR1->C-X3-C_motif_chemokine_receptor_1,chr3:39304985-39323226:-	MDAMB436_BREAST	1	1	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	PDAP1--PTCD1	1	19	PDAP1	5873	chr7:98995485:-	PTCD1	24457	chr7:99017772:-	ONLY_REF_SPLICE	YES	640	74	0.03	0.21	0.0135	0.2556	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[7910],PDAP1->PDGFA_associated_protein_1,chr7:98989671-99006452:-,PTCD1->chr7:99014362-99063787:-,pentatricopeptide_repeat_domain_1	MDAMB436_BREAST	0.03	0.21	0.2691	TRUE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	SLC22A23--PHACTR2	5	3	SLC22A23	2117	chr6:3456140:-	PHACTR2	45326	chr6:144128194:+	ONLY_REF_SPLICE	YES	12	1	0.4	0.89	0.0673	0.0404	SLC22A23->Oncogene{Bushman},chr6:3269196-3457256:-,solute_carrier_family_22_member_23,PHACTR2->chr6:143857982-144152322:+,phosphatase_and_actin_regulator_2	MDAMB436_BREAST	0.4	0.89	0.1077	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	STRN--SULT1C2	5	3	STRN	1243	chr2:37193373:-	SULT1C2	33907	chr2:108917356:+	ONLY_REF_SPLICE	YES	3	39	0.73	0.17	0.0673	0.0404	STRN->Oncogene{Bushman},chr2:37070783-37193615:-,striatin,SULT1C2->chr2:108905095-108926371:+,sulfotransferase_family_1C_member_2	MDAMB436_BREAST	0.17	0.73	0.1077	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	RRP8--GMDS	5	2	RRP8	1217	chr11:6624634:-	GMDS	30094	chr6:1624775:-	ONLY_REF_SPLICE	YES	45	0	0.13	1	0.0673	0.0269	RRP8->chr11:6616305-6624850:-,ribosomal_RNA_processing_8,_methyltransferase,_homolog_(yeast),GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	MDAMB436_BREAST	0.13	1	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SLIT2--RP11-608O21.1	5	2	SLIT2	6032	chr4:20270504:+	RP11-608O21.1	51030	chr4:19535171:+	ONLY_REF_SPLICE	YES	33	1	0.17	0.88	0.0673	0.0269	SLIT2->ArcherDX_panel,FoundationOne_panel,chr4:20254883-20622184:+,slit_guidance_ligand_2,RP11-608O21.1->chr4:19457059-19911315:+	MDAMB436_BREAST	0.17	0.88	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CEP128--DIO2	5	1	CEP128	28669	chr14:81209419:-	DIO2	47013	chr14:80744862:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0673	0.0135	NEIGHBORS[89230],CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,DIO2->Oncogene{Bushman},chr14:80663873-80854100:-,deiodinase,_iodothyronine,_type_II	MDAMB436_BREAST	0.86	1	0.0808	FALSE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	HSP90AB1--MT-RNR2	5	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1977	0	0	1	0.0673	0.0135	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MDAMB436_BREAST	0	1	0.0808	FALSE	13	9	0	364	0	FALSE	ACH-000573
MDAMB436_BREAST	MT-ATP6--MT-CO1	5	1	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2502	16970	0	0	0.0673	0.0135	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB436_BREAST	0	0	0.0808	FALSE	183	104	9	328	0	FALSE	ACH-000573
MDAMB436_BREAST	NCOR2--UBC	5	1	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	2	72	0.75	0.08	0.0673	0.0135	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	MDAMB436_BREAST	0.08	0.75	0.0808	TRUE	145	312	16	51	0	FALSE	ACH-000573
MDAMB436_BREAST	ZNF787--ZSCAN5A	5	1	ZNF787	1109	chr19:56632541:-	ZSCAN5A	12014	chr19:56827637:-	ONLY_REF_SPLICE	YES	34	0	0.15	1	0.0673	0.0135	HGNC_GENEFAM,PROTCLUST,ZNF787->chr19:56598732-56632649:-,zinc_finger_protein_787,ZSCAN5A->chr19:56732681-56879752:-,zinc_finger_and_SCAN_domain_containing_5A	MDAMB436_BREAST	0.15	1	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CELF1--C1QTNF4	5	0	CELF1	3345	chr11:47574544:-	C1QTNF4	33157	chr11:47612367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0673	0	LOCAL_REARRANGEMENT:-:[24095],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,C1QTNF4->C1q_and_tumor_necrosis_factor_related_protein_4,chr11:47611216-47616211:-	MDAMB436_BREAST	1	1	0.0673	TRUE	0	1	0	1	1	TRUE	ACH-000573
MDAMB436_BREAST	FTH1--ACTB	5	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0673	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MDAMB436_BREAST	1	1	0.0673	TRUE	1	0	0	97	0	FALSE	ACH-000573
MDAMB436_BREAST	FTH1--ACTB	5	0	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0673	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MDAMB436_BREAST	1	1	0.0673	TRUE	1	0	0	97	0	FALSE	ACH-000573
MDAMB436_BREAST	MT-ATP6--MT-ND2	5	0	MT-ATP6	1123	chrM:8649:+	MT-ND2	5567	chrM:5355:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0673	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MDAMB436_BREAST	1	1	0.0673	FALSE	177	96	13	17	0	FALSE	ACH-000573
MDAMB436_BREAST	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0673	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB436_BREAST	1	1	0.0673	FALSE	499	1288	110	792	0	FALSE	ACH-000573
MDAMB436_BREAST	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0673	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MDAMB436_BREAST	1	1	0.0673	TRUE	0	0	0	434	0	FALSE	ACH-000573
MDAMB436_BREAST	PTEN--PRDX3	3	8	PTEN	4898	chr10:89653866:+	PRDX3	25441	chr10:120934104:-	ONLY_REF_SPLICE	YES	1	392	0.92	0.03	0.0404	0.1076	{Klijn_CCL:Breast=1},PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog,PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3	MDAMB436_BREAST	0.03	0.92	0.148	TRUE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	CTD-2547E10.2--CTB-31N19.2	3	6	CTD-2547E10.2	8351	chr16:21489412:-	CTB-31N19.2	36456	chr16:21544409:-	ONLY_REF_SPLICE	YES	60	0	0.13	1	0.0404	0.0807	LOCAL_REARRANGEMENT:-:[12501],CTD-2547E10.2->chr16:21458004-21531765:-,CTB-31N19.2->chr16:21544266-21561694:-	MDAMB436_BREAST	0.13	1	0.1211	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	PCCA--TM9SF2	4	2	PCCA	7668	chr13:100809594:+	TM9SF2	52501	chr13:100206558:+	ONLY_REF_SPLICE	YES	76	576	0.07	0.01	0.0538	0.0269	PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit,TM9SF2->chr13:100153671-100216260:+,transmembrane_9_superfamily_member_2	MDAMB436_BREAST	0.01	0.07	0.0807	FALSE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	PTEN--PRDX3	2	10	PTEN	4898	chr10:89653866:+	PRDX3	24128	chr10:120936665:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0269	0.1345	{Klijn_CCL:Breast=1},PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog,PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3	MDAMB436_BREAST	0.92	1	0.1614	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	RP11-603B24.1--HERC2P3	4	2	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0.0269	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	MDAMB436_BREAST	1	1	0.0807	TRUE	27	10	1	20	0	FALSE	ACH-000573
MDAMB436_BREAST	ZUFSP--RP11-257K9.8	4	2	ZUFSP	11026	chr6:116966877:-	RP11-257K9.8	20911	chr6:73926362:-	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.0538	0.0269	ZUFSP->chr6:116956781-116989957:-,zinc_finger_with_UFM1_specific_peptidase_domain,RP11-257K9.8->chr6:73919469-73972919:-	MDAMB436_BREAST	0.46	1	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	NRIP1--AF127936.7	4	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.31	1	0.0538	0.0135	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB436_BREAST	0.31	1	0.0673	FALSE	125	705	46	456	0	FALSE	ACH-000573
MDAMB436_BREAST	PRKACB--HMGN5	4	1	PRKACB	1310	chr1:84544054:+	HMGN5	30102	chrX:80377171:-	ONLY_REF_SPLICE	YES	54	10	0.08	0.33	0.0538	0.0135	PRKACB->chr1:84543745-84704181:+,protein_kinase_cAMP-activated_catalytic_subunit_beta,HMGN5->chrX:80369200-80457441:-,high_mobility_group_nucleosome_binding_domain_5	MDAMB436_BREAST	0.08	0.33	0.0673	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SPTAN1--GLE1	3	5	SPTAN1	2990	chr9:131329256:+	GLE1	58937	chr9:131298634:+	ONLY_REF_SPLICE	YES	92	131	0.08	0.06	0.0404	0.0673	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[10299],SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	MDAMB436_BREAST	0.06	0.08	0.1077	TRUE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	SRP72--PAICS	4	1	SRP72	4075	chr4:57338009:+	PAICS	33079	chr4:57325538:+	ONLY_REF_SPLICE	YES	291	963	0.02	0.01	0.0538	0.0135	LOCAL_REARRANGEMENT:+:[5547],SRP72->chr4:57333081-57369839:+,signal_recognition_particle_72kDa,PAICS->chr4:57301907-57327534:+,phosphoribosylaminoimidazole_carboxylase;_phosphoribosylaminoimidazolesuccinocarboxamide_synthase	MDAMB436_BREAST	0.01	0.02	0.0673	FALSE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	UQCRH--TEX26-AS1	4	1	UQCRH	3406	chr1:46775988:+	TEX26-AS1	15172	chr13:31490546:-	ONLY_REF_SPLICE	YES	972	0	0.01	1	0.0538	0.0135	UQCRH->chr1:46769303-46782448:+,ubiquinol-cytochrome_c_reductase_hinge_protein,TEX26-AS1->TEX26_antisense_RNA_1,chr13:31456070-31507983:-	MDAMB436_BREAST	0.01	1	0.0673	FALSE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	USP3-AS1--FAM96A	4	1	USP3-AS1	4499	chr15:63886894:-	FAM96A	16610	chr15:64386070:-	INCL_NON_REF_SPLICE	YES	3	1	0.62	0.83	0.0538	0.0135	USP3-AS1->USP3_antisense_RNA_1,chr15:63836446-63893788:-,FAM96A->chr15:64364758-64386217:-,family_with_sequence_similarity_96_member_A	MDAMB436_BREAST	0.62	0.83	0.0673	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	CARNS1--ADRBK1	4	0	CARNS1	5594	chr11:67187032:+	ADRBK1	22426	chr11:67051325:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0	CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+,ADRBK1->adrenergic,_beta,_receptor_kinase_1,chr11:67033881-67054027:+	MDAMB436_BREAST	1	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	COMMD9--EFHC2	4	0	COMMD9	7116	chr11:36295824:-	EFHC2	27586	chrX:44008142:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0	COMMD9->COMM_domain_containing_9,chr11:36295051-36310999:-,EFHC2->EF-hand_domain_containing_2,chrX:44007128-44202918:-	MDAMB436_BREAST	1	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	FTH1--ACTB	4	0	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MDAMB436_BREAST	1	1	0.0538	TRUE	1	0	0	97	0	FALSE	ACH-000573
MDAMB436_BREAST	MT-ATP6--MT-ND2	4	0	MT-ATP6	1098	chrM:8624:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MDAMB436_BREAST	1	1	0.0538	FALSE	177	96	13	17	0	FALSE	ACH-000573
MDAMB436_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB436_BREAST	1	1	0.0538	FALSE	499	1288	110	792	0	FALSE	ACH-000573
MDAMB436_BREAST	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB436_BREAST	1	1	0.0538	FALSE	369	2501	205	193	0	FALSE	ACH-000573
MDAMB436_BREAST	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MDAMB436_BREAST	1	1	0.0538	TRUE	0	0	0	434	0	FALSE	ACH-000573
MDAMB436_BREAST	NRP2--BTNL8	3	4	NRP2	7803	chr2:206581098:+	BTNL8	38276	chr5:180335586:+	ONLY_REF_SPLICE	YES	13	0	0.35	1	0.0404	0.0538	NRP2->chr2:206546714-206662857:+,neuropilin_2,BTNL8->butyrophilin_like_8,chr5:180326077-180377906:+	MDAMB436_BREAST	0.35	1	0.0942	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SWT1--PKP1	4	0	SWT1	11477	chr1:185159774:+	PKP1	27073	chr1:201263070:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0538	0	SWT1->SWT1,_RNA_endoribonuclease_homolog,chr1:185126212-185260897:+,PKP1->chr1:201252580-201302121:+,plakophilin_1	MDAMB436_BREAST	1	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ZNF787--ZSCAN5A	4	0	ZNF787	1109	chr19:56632541:-	ZSCAN5A	25700	chr19:56736542:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0538	0	HGNC_GENEFAM,PROTCLUST,ZNF787->chr19:56598732-56632649:-,zinc_finger_protein_787,ZSCAN5A->chr19:56732681-56879752:-,zinc_finger_and_SCAN_domain_containing_5A	MDAMB436_BREAST	1	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	IARS--NOL8	3	3	IARS	1316	chr9:95055723:-	NOL8	56863	chr9:95061236:-	ONLY_REF_SPLICE	YES	132	169	0.04	0.03	0.0404	0.0404	LOCAL_REARRANGEMENT:-:[3602],IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase,NOL8->chr9:95059640-95087918:-,nucleolar_protein_8	MDAMB436_BREAST	0.03	0.04	0.0808	TRUE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	RP11-603B24.1--HERC2P3	3	3	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	30131	chr15:20613982:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0.0404	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	MDAMB436_BREAST	1	1	0.0808	TRUE	3	0	0	2	0	FALSE	ACH-000573
MDAMB436_BREAST	SLC22A23--PHACTR2	2	7	SLC22A23	7596	chr6:3415986:-	PHACTR2	45326	chr6:144128194:+	ONLY_REF_SPLICE	YES	6	1	0.6	0.9	0.0269	0.0942	SLC22A23->Oncogene{Bushman},chr6:3269196-3457256:-,solute_carrier_family_22_member_23,PHACTR2->chr6:143857982-144152322:+,phosphatase_and_actin_regulator_2	MDAMB436_BREAST	0.6	0.9	0.1211	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	STRN--SULT1C2	3	3	STRN	1243	chr2:37193373:-	SULT1C2	33845	chr2:108917294:+	ONLY_REF_SPLICE	YES	3	30	0.67	0.17	0.0404	0.0404	STRN->Oncogene{Bushman},chr2:37070783-37193615:-,striatin,SULT1C2->chr2:108905095-108926371:+,sulfotransferase_family_1C_member_2	MDAMB436_BREAST	0.17	0.67	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TTYH3--GNA12	3	2	TTYH3	11754	chr7:2698649:+	GNA12	28030	chr7:2773135:-	ONLY_REF_SPLICE	YES	313	162	0.02	0.03	0.0404	0.0269	LOCAL_INVERSION:+:-:[63310],TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,GNA12->G_protein_subunit_alpha_12,Oncogene{Bushman},chr7:2767746-2883958:-	MDAMB436_BREAST	0.02	0.03	0.0673	TRUE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	USP3-AS1--FAM96A	3	2	USP3-AS1	7939	chr15:63881028:-	FAM96A	16610	chr15:64386070:-	INCL_NON_REF_SPLICE	YES	6	1	0.45	0.83	0.0404	0.0269	USP3-AS1->USP3_antisense_RNA_1,chr15:63836446-63893788:-,FAM96A->chr15:64364758-64386217:-,family_with_sequence_similarity_96_member_A	MDAMB436_BREAST	0.45	0.83	0.0673	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	MT-ATP6--MT-ND2	3	1	MT-ATP6	1295	chrM:8821:+	MT-ND2	5565	chrM:5353:+	INCL_NON_REF_SPLICE	NO	12100	2487	0	0	0.0404	0.0135	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MDAMB436_BREAST	0	0	0.0539	FALSE	177	96	13	17	0	FALSE	ACH-000573
MDAMB436_BREAST	MT-ATP6--MT-ND2	3	1	MT-ATP6	1555	chrM:9081:+	MT-ND2	5549	chrM:5337:+	INCL_NON_REF_SPLICE	YES	2502	2878	0	0	0.0404	0.0135	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MDAMB436_BREAST	0	0	0.0539	FALSE	177	96	13	17	0	FALSE	ACH-000573
MDAMB436_BREAST	MT-ATP6--MT-ND2	3	1	MT-ATP6	1465	chrM:8991:+	MT-ND2	5441	chrM:5229:+	INCL_NON_REF_SPLICE	YES	6217	4879	0	0	0.0404	0.0135	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MDAMB436_BREAST	0	0	0.0539	FALSE	177	96	13	17	0	FALSE	ACH-000573
MDAMB436_BREAST	SCARB1--UBC	3	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	105	73	0.04	0.05	0.0404	0.0135	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	MDAMB436_BREAST	0.04	0.05	0.0539	TRUE	55	66	6	101	0	FALSE	ACH-000573
MDAMB436_BREAST	AC084125.4--ADCK5	3	0	AC084125.4	1222	chr8:145660823:+	ADCK5	12676	chr8:145603076:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:+:[42145],AC084125.4->chr8:145660602-145665354:+,ADCK5->aarF_domain_containing_kinase_5,chr8:145596790-145618457:+	MDAMB436_BREAST	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	FTH1--ACTB	3	0	FTH1	1242	chr11:61734891:-	ACTB	11642	chr7:5570181:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MDAMB436_BREAST	1	1	0.0404	TRUE	1	0	0	97	0	FALSE	ACH-000573
MDAMB436_BREAST	FTH1--ACTB	3	0	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MDAMB436_BREAST	1	1	0.0404	TRUE	1	0	0	97	0	FALSE	ACH-000573
MDAMB436_BREAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1139	chrM:8665:+	MT-CO1	5217	chrM:6439:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB436_BREAST	1	1	0.0404	FALSE	183	104	9	328	0	FALSE	ACH-000573
MDAMB436_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB436_BREAST	1	1	0.0404	FALSE	499	1288	110	792	0	FALSE	ACH-000573
MDAMB436_BREAST	NCOR2--UBC	2	3	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	126	72	0.04	0.06	0.0269	0.0404	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	MDAMB436_BREAST	0.04	0.06	0.0673	TRUE	52	148	13	33	0	FALSE	ACH-000573
MDAMB436_BREAST	POLE4--RP11-355F16.1	2	3	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	209	0	0.02	1	0.0269	0.0404	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	MDAMB436_BREAST	0.02	1	0.0673	TRUE	5	7	0	37	0	FALSE	ACH-000573
MDAMB436_BREAST	KANSL1--ARL17B	2	2	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	21	17	0.16	0.19	0.0269	0.0269	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	MDAMB436_BREAST	0.16	0.19	0.0538	TRUE	105	90	7	93	0	FALSE	ACH-000573
MDAMB436_BREAST	USP34--XPO1	1	6	USP34	19239	chr2:61558411:-	XPO1	86654	chr2:61727029:-	ONLY_REF_SPLICE	NO	21	221	0.25	0.03	0.0135	0.0807	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	MDAMB436_BREAST	0.03	0.25	0.0942	TRUE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	CD44--PDHX	2	1	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	1174	140	0	0.02	0.0269	0.0135	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	MDAMB436_BREAST	0	0.02	0.0404	FALSE	0	20	0	35	2	FALSE	ACH-000573
MDAMB436_BREAST	NRP2--BTNL8	2	1	NRP2	7803	chr2:206581098:+	BTNL8	40388	chr5:180338339:+	ONLY_REF_SPLICE	YES	13	1	0.19	0.75	0.0269	0.0135	NRP2->chr2:206546714-206662857:+,neuropilin_2,BTNL8->butyrophilin_like_8,chr5:180326077-180377906:+	MDAMB436_BREAST	0.19	0.75	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	RP11-31F15.1--WNT2B	2	1	RP11-31F15.1	3407	chr1:113503197:+	WNT2B	15940	chr1:113057496:+	ONLY_REF_SPLICE	YES	5	0	0.38	1	0.0269	0.0135	RP11-31F15.1->chr1:113499037-113542118:+,WNT2B->Wnt_family_member_2B,chr1:113009163-113072787:+	MDAMB436_BREAST	0.38	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	SERINC4--MFAP1	2	1	SERINC4	2263	chr15:44091157:-	MFAP1	14167	chr15:44105555:-	ONLY_REF_SPLICE	YES	0	167	1	0.02	0.0269	0.0135	LOCAL_REARRANGEMENT:-:[4271],SERINC4->chr15:44086360-44092419:-,serine_incorporator_4,MFAP1->chr15:44096690-44117000:-,microfibrillar_associated_protein_1	MDAMB436_BREAST	0.02	1	0.0404	TRUE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	TMEM181--TULP4	2	1	TMEM181	16451	chr6:159052421:+	TULP4	31874	chr6:158900783:+	ONLY_REF_SPLICE	YES	117	6	0.03	0.33	0.0269	0.0135	LOCAL_REARRANGEMENT:+:[24608],TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181,TULP4->chr6:158733692-158932860:+,tubby_like_protein_4	MDAMB436_BREAST	0.03	0.33	0.0404	TRUE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	WTAP--RP11-13P5.1	2	1	WTAP	2749	chr6:160148365:+	RP11-13P5.1	19479	chr6:159536464:+	ONLY_REF_SPLICE	YES	143	0	0.02	1	0.0269	0.0135	WTAP->Wilms_tumor_1_associated_protein,chr6:160146617-160177351:+,RP11-13P5.1->chr6:159528823-159537085:+	MDAMB436_BREAST	0.02	1	0.0404	TRUE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	WWOX--VAT1L	2	1	WWOX	10605	chr16:78198186:+	VAT1L	42429	chr16:78005747:+	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0269	0.0135	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	MDAMB436_BREAST	0.27	1	0.0404	TRUE	0	0	0	6	0	TRUE	ACH-000573
MDAMB436_BREAST	EDF1--TPRN	2	0	EDF1	2690	chr9:139757740:-	TPRN	13208	chr9:140087143:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	{Klijn_CCL:Colo-Rectal=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,TPRN->chr9:140086069-140098645:-,taperin	MDAMB436_BREAST	1	1	0.0269	TRUE	0	4	0	4	0	TRUE	ACH-000573
MDAMB436_BREAST	FOXK1--RADIL	2	0	FOXK1	6548	chr7:4780654:+	RADIL	41924	chr7:4843385:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_INVERSION:+:-:[25612],FOXK1->chr7:4683388-4811074:+,forkhead_box_K1,RADIL->Rap_associating_with_DIL_domain,chr7:4836686-4923350:-	MDAMB436_BREAST	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	HIBADH--JAZF1	2	0	HIBADH	4902	chr7:27671955:-	JAZF1	21404	chr7:27935035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	HIBADH->3-hydroxyisobutyrate_dehydrogenase,chr7:27565061-27702614:-,JAZF1->JAZF_zinc_finger_1,Oncogene{Bushman},chr7:27870192-28220362:-	MDAMB436_BREAST	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	RFTN1--OXNAD1	2	0	RFTN1	3399	chr3:16535232:-	OXNAD1	26067	chr3:16310633:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},NEIGHBORS_OVERLAP:-:+:[36725],RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,OXNAD1->chr3:16306706-16391806:+,oxidoreductase_NAD_binding_domain_containing_1	MDAMB436_BREAST	1	1	0.0269	FALSE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	STXBP4--TOM1L1	2	0	STXBP4	1089	chr17:53046176:+	TOM1L1	48739	chr17:53036641:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:+:[6778],STXBP4->chr17:53046088-53241646:+,syntaxin_binding_protein_4,TOM1L1->chr17:52976748-53039310:+,target_of_myb1_like_1_membrane_trafficking_protein	MDAMB436_BREAST	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	TIAL1--MCMBP	2	0	TIAL1	1596	chr10:121355946:-	MCMBP	26180	chr10:121609088:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-,MCMBP->chr10:121588972-121652068:-,minichromosome_maintenance_complex_binding_protein	MDAMB436_BREAST	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ZC3HAV1--CD44	2	0	ZC3HAV1	5859	chr7:138764216:-	CD44	31310	chr11:35219668:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	ZC3HAV1->chr7:138728266-138794465:-,zinc_finger_CCCH-type_containing,_antiviral_1,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	MDAMB436_BREAST	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ZNF788--PGLYRP2	2	0	ZNF788	1208	chr19:12203285:+	PGLYRP2	19261	chr19:15590246:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	ZNF788->chr19:12203078-12225491:+,chr19:12203078-12248050:+,zinc_finger_family_member_788,PGLYRP2->chr19:15579456-15609767:-,peptidoglycan_recognition_protein_2	MDAMB436_BREAST	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	NCOR2--UBC	1	3	NCOR2	21671	chr12:124882665:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	71	72	0.05	0.05	0.0135	0.0404	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	MDAMB436_BREAST	0.05	0.05	0.0539	TRUE	30	26	0	16	0	FALSE	ACH-000573
MDAMB436_BREAST	ATP5B--PTGES3	1	2	ATP5B	4557	chr12:57036242:-	PTGES3	13920	chr12:57065631:-	ONLY_REF_SPLICE	YES	1409	534	0	0.01	0.0135	0.0269	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:-:[17329],ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-,PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3	MDAMB436_BREAST	0	0.01	0.0404	FALSE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	EXT1--SAMD12	1	2	EXT1	2769	chr8:119122324:-	SAMD12	25699	chr8:119452200:-	ONLY_REF_SPLICE	NO	244	3	0.01	0.5	0.0135	0.0269	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:-:[77606],EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	MDAMB436_BREAST	0.01	0.5	0.0404	FALSE	0	2	0	4	0	FALSE	ACH-000573
MDAMB436_BREAST	TNFAIP8--DMXL1	1	2	TNFAIP8	1216	chr5:118604602:+	DMXL1	72791	chr5:118582690:+	ONLY_REF_SPLICE	YES	23	25	0.12	0.11	0.0135	0.0269	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_REARRANGEMENT:+:[19554],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,DMXL1->Dmx_like_1,chr5:118373467-118584833:+	MDAMB436_BREAST	0.11	0.12	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	ATG4B--PTMA	1	1	ATG4B	10210	chr2:242606253:+	PTMA	23954	chr2:232576058:+	ONLY_REF_SPLICE	YES	83	2748	0.02	0	0.0135	0.0135	ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MDAMB436_BREAST	0	0.02	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	CEP128--DIO2	1	1	CEP128	28669	chr14:81209419:-	DIO2	49847	chr14:80682493:-	ONLY_REF_SPLICE	YES	1	1	0.67	0.67	0.0135	0.0135	NEIGHBORS[89230],CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,DIO2->Oncogene{Bushman},chr14:80663873-80854100:-,deiodinase,_iodothyronine,_type_II	MDAMB436_BREAST	0.67	0.67	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	CEP128--DIO2	1	1	CEP128	28669	chr14:81209419:-	DIO2	49260	chr14:80683080:-	ONLY_REF_SPLICE	YES	1	1	0.67	0.67	0.0135	0.0135	NEIGHBORS[89230],CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,DIO2->Oncogene{Bushman},chr14:80663873-80854100:-,deiodinase,_iodothyronine,_type_II	MDAMB436_BREAST	0.67	0.67	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	EFEMP2--FIBP	1	1	EFEMP2	4736	chr11:65637328:-	FIBP	11560	chr11:65655603:-	ONLY_REF_SPLICE	YES	47	177	0.04	0.01	0.0135	0.0135	LOCAL_REARRANGEMENT:-:[10149],EFEMP2->EGF_containing_fibulin-like_extracellular_matrix_protein_2,chr11:65633912-65641063:-,FIBP->FGF1_intracellular_binding_protein,chr11:65651212-65656010:-	MDAMB436_BREAST	0.01	0.04	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	EIF2S1--GPHN	1	1	EIF2S1	9004	chr14:67849307:+	GPHN	49405	chr14:67647521:+	ONLY_REF_SPLICE	NO	458	12	0	0.14	0.0135	0.0135	EIF2S1->chr14:67826714-67853233:+,eukaryotic_translation_initiation_factor_2_subunit_alpha,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	MDAMB436_BREAST	0	0.14	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	FBXW7--MCU	1	1	FBXW7	2161	chr4:153456093:-	MCU	35541	chr10:74594117:+	ONLY_REF_SPLICE	NO	4	13	0.33	0.13	0.0135	0.0135	FBXW7->ArcherDX_panel,F-box_and_WD_repeat_domain_containing_7,FoundationOne_panel,Oncogene{Bushman},chr4:153242410-153457253:-,MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter	MDAMB436_BREAST	0.13	0.33	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	HIBADH--JAZF1	1	1	HIBADH	6024	chr7:27668990:-	JAZF1	24883	chr7:27880486:-	ONLY_REF_SPLICE	YES	94	20	0.02	0.09	0.0135	0.0135	HIBADH->3-hydroxyisobutyrate_dehydrogenase,chr7:27565061-27702614:-,JAZF1->JAZF_zinc_finger_1,Oncogene{Bushman},chr7:27870192-28220362:-	MDAMB436_BREAST	0.02	0.09	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	LINC00610--EFHC2	1	1	LINC00610	1194	chr11:36294716:-	EFHC2	24435	chrX:44008142:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0135	0.0135	LINC00610->chr11:36290834-36294909:-,long_intergenic_non-protein_coding_RNA_610,EFHC2->EF-hand_domain_containing_2,chrX:44007128-44202918:-	MDAMB436_BREAST	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000573
MDAMB436_BREAST	NCOR2--UBC	1	1	NCOR2	2329	chr12:125020111:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	8	72	0.2	0.03	0.0135	0.0135	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	MDAMB436_BREAST	0.03	0.2	0.027	TRUE	48	117	12	14	0	FALSE	ACH-000573
MDAMB436_BREAST	NCOR2--UBC	1	1	NCOR2	11484	chr12:124934361:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	116	72	0.02	0.03	0.0135	0.0135	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	MDAMB436_BREAST	0.02	0.03	0.027	TRUE	12	15	2	11	0	FALSE	ACH-000573
MDAMB436_BREAST	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0135	0.0135	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB436_BREAST	0.67	1	0.027	FALSE	292	1546	117	613	0	FALSE	ACH-000573
MDAMB436_BREAST	RP11-603B24.1--HERC2P3	1	1	RP11-603B24.1	1304	chr15:22567225:+	HERC2P3	30131	chr15:20613982:-	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.0135	0.0135	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	MDAMB436_BREAST	0.4	1	0.027	TRUE	0	1	0	1	1	FALSE	ACH-000573
MDAMB436_BREAST	SEPT7--GALNT8	1	1	SEPT7	5760	chr7:35872510:+	GALNT8	30108	chr12:4848329:+	ONLY_REF_SPLICE	YES	373	0	0.01	1	0.0135	0.0135	SEPT7->chr7:35840542-35944917:+,septin_7,GALNT8->chr12:4829507-4960277:+,polypeptide_N-acetylgalactosaminyltransferase_8	MDAMB436_BREAST	0.01	1	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	TMEM18--SQSTM1	1	1	TMEM18	2930	chr2:675510:-	SQSTM1	21749	chr5:179249958:+	ONLY_REF_SPLICE	YES	189	3542	0.01	0	0.0135	0.0135	TMEM18->chr2:667335-677439:-,transmembrane_protein_18,SQSTM1->chr5:179233388-179265078:+,sequestosome_1	MDAMB436_BREAST	0	0.01	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	TMEM181--TULP4	1	1	TMEM181	13211	chr6:159046786:+	TULP4	31874	chr6:158900783:+	ONLY_REF_SPLICE	YES	105	6	0.02	0.25	0.0135	0.0135	LOCAL_REARRANGEMENT:+:[24608],TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181,TULP4->chr6:158733692-158932860:+,tubby_like_protein_4	MDAMB436_BREAST	0.02	0.25	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	USP3--NTSR1	1	1	USP3	9169	chr15:63829355:+	NTSR1	35341	chr20:61389618:+	ONLY_REF_SPLICE	YES	31	16	0.06	0.11	0.0135	0.0135	USP3->Oncogene{Bushman},chr15:63796793-63886839:+,ubiquitin_specific_peptidase_3,NTSR1->chr20:61340189-61394123:+,neurotensin_receptor_1_(high_affinity)	MDAMB436_BREAST	0.06	0.11	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000573
MDAMB436_BREAST	YWHAE--CRK	1	1	YWHAE	7944	chr17:1257505:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	969	108	0	0.02	0.0135	0.0135	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	MDAMB436_BREAST	0	0.02	0.027	FALSE	0	0	0	4	0	FALSE	ACH-000573
HGC27_STOMACH	ZHX1--TAF2	234	207	ZHX1	3911	chr8:124279513:-	TAF2	18914	chr8:120818641:-	ONLY_REF_SPLICE	YES	1459	673	0.23	0.4	2.4765	2.1908	ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-	HGC27_STOMACH	0.23	0.4	4.6673	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	CSMD3--RP11-89M16.1	144	117	CSMD3	12944	chr8:114110985:-	RP11-89M16.1	98638	chr8:129440630:-	ONLY_REF_SPLICE	YES	38	0	0.87	1	1.524	1.2383	CSMD3->CUB_and_Sushi_multiple_domains_3,Oncogene{Bushman},chr8:113235157-114449328:-,RP11-89M16.1->chr8:129417515-129576925:-	HGC27_STOMACH	0.87	1	2.7623	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	EIF3H--RP11-785H20.1	78	76	EIF3H	7051	chr8:117738255:-	RP11-785H20.1	23614	chr8:122901064:+	ONLY_REF_SPLICE	YES	1380	0	0.1	1	0.8255	0.8043	EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RP11-785H20.1->chr8:122896963-122916512:+	HGC27_STOMACH	0.1	1	1.6298	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	TATDN1--MTSS1	81	0	TATDN1	1434	chr8:125551266:-	MTSS1	28842	chr8:125597402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.8573	0	{Klijn_CCL:Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[11332],TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	HGC27_STOMACH	1	1	0.8573	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	TIMM23B--LINC00843	65	35	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6879	0.3704	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HGC27_STOMACH	1	1	1.0583	TRUE	508	994	45	981	0	FALSE	ACH-000847
HGC27_STOMACH	PSMA3--ACTR10	55	48	PSMA3	2731	chr14:58714550:+	ACTR10	16805	chr14:58669573:+	ONLY_REF_SPLICE	YES	1605	328	0.06	0.24	0.5821	0.508	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[9799],PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3,ACTR10->actin-related_protein_10_homolog,chr14:58666798-58701750:+	HGC27_STOMACH	0.06	0.24	1.0901	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	PSMA3--RP11-349A22.3	56	30	PSMA3	2731	chr14:58714550:+	RP11-349A22.3	16339	chr14:58652043:+	INCL_NON_REF_SPLICE	YES	1605	0	0.05	1	0.5927	0.3175	LOCAL_REARRANGEMENT:+:[59324],PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3,RP11-349A22.3->chr14:58651294-58652225:+	HGC27_STOMACH	0.05	1	0.9102	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	PSMA3--ACTR10	53	9	PSMA3	1111	chr14:58711659:+	ACTR10	16805	chr14:58669573:+	ONLY_REF_SPLICE	YES	96	328	0.39	0.16	0.5609	0.0953	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[9799],PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3,ACTR10->actin-related_protein_10_homolog,chr14:58666798-58701750:+	HGC27_STOMACH	0.16	0.39	0.6562	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	ZHX1--TAF2	1	208	ZHX1	3911	chr8:124279513:-	TAF2	17753	chr8:120831746:-	ONLY_REF_SPLICE	YES	1459	800	0.13	0.21	0.0106	2.2013	ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-	HGC27_STOMACH	0.13	0.21	2.2119	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	ZHX1--TAF2	5	189	ZHX1	3907	chr8:124279517:-	TAF2	18914	chr8:120818641:-	INCL_NON_REF_SPLICE	YES	1411	673	0.12	0.22	0.0529	2.0003	ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-	HGC27_STOMACH	0.12	0.22	2.0532	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	BLVRA--COA1	37	35	BLVRA	7986	chr7:43832411:+	COA1	29676	chr7:43680248:-	ONLY_REF_SPLICE	YES	436	611	0.14	0.11	0.3916	0.3704	LOCAL_INVERSION:+:-:[28963],BLVRA->biliverdin_reductase_A,chr7:43798279-43846939:+,COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog	HGC27_STOMACH	0.11	0.14	0.762	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	RQCD1--RUFY4	41	15	RQCD1	1399	chr2:219433701:+	RUFY4	27661	chr2:218947833:+	ONLY_REF_SPLICE	YES	235	0	0.19	1	0.4339	0.1588	RQCD1->chr2:219433303-219461803:+,RUFY4->RUN_and_FYVE_domain_containing_4,chr2:218899683-218955304:+	HGC27_STOMACH	0.19	1	0.5927	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	EIF3H--RP11-785H20.1	33	46	EIF3H	3765	chr8:117767905:-	RP11-785H20.1	23614	chr8:122901064:+	ONLY_REF_SPLICE	YES	1310	0	0.06	1	0.3493	0.4868	EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RP11-785H20.1->chr8:122896963-122916512:+	HGC27_STOMACH	0.06	1	0.8361	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	ZNF654--HMGB2	36	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.381	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HGC27_STOMACH	1	1	0.381	TRUE	0	0	0	518	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	35	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16030	11	0	0.77	0.3704	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.77	0.3916	FALSE	230	198	14	283	0	FALSE	ACH-000847
HGC27_STOMACH	TIMM23--RP11-464F9.1	33	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	496	11	0.08	0.79	0.3493	0.0847	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HGC27_STOMACH	0.08	0.79	0.434	TRUE	519	3926	326	965	0	FALSE	ACH-000847
HGC27_STOMACH	HSD17B4--TNFAIP8	26	25	HSD17B4	24393	chr5:118862914:+	TNFAIP8	44947	chr5:118728511:+	ONLY_REF_SPLICE	YES	405	209	0.11	0.2	0.2752	0.2646	LOCAL_REARRANGEMENT:+:[52755],HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	HGC27_STOMACH	0.11	0.2	0.5398	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	CMC1--ZCWPW2	23	34	CMC1	3625	chr3:28304871:+	ZCWPW2	28090	chr3:28476601:+	ONLY_REF_SPLICE	YES	127	1	0.31	0.98	0.2434	0.3598	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[24004],CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	HGC27_STOMACH	0.31	0.98	0.6032	FALSE	0	1	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	ZHX1--TAF2	5	106	ZHX1	3911	chr8:124279513:-	TAF2	20033	chr8:120816259:-	ONLY_REF_SPLICE	YES	1459	646	0.07	0.15	0.0529	1.1218	ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1,TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-	HGC27_STOMACH	0.07	0.15	1.1747	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ND4L	4	104	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	83	0	0.57	1	0.0423	1.1007	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HGC27_STOMACH	0.57	1	1.143	FALSE	344	827	44	306	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	29	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15912	8	0	0.79	0.3069	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.79	0.3281	FALSE	230	193	14	283	0	FALSE	ACH-000847
HGC27_STOMACH	RP11-680H20.2--MTSS1	24	20	RP11-680H20.2	1128	chr11:93971443:+	MTSS1	27933	chr8:125568646:-	ONLY_REF_SPLICE	YES	0	66	1	0.4	0.254	0.2117	RP11-680H20.2->chr11:93971316-94012372:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	HGC27_STOMACH	0.4	1	0.4657	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ND4L	3	101	MT-ND4	1112	chrM:10871:+	MT-ND4L	5464	chrM:10555:+	INCL_NON_REF_SPLICE	YES	35	0	0.75	1	0.0318	1.0689	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HGC27_STOMACH	0.75	1	1.1007	FALSE	344	826	44	306	0	FALSE	ACH-000847
HGC27_STOMACH	RERE--SLC2A5	22	17	RERE	1484	chr1:8877219:-	SLC2A5	42058	chr1:9145201:-	ONLY_REF_SPLICE	YES	7	1	0.85	0.97	0.2328	0.1799	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC2A5->chr1:9095166-9148537:-,solute_carrier_family_2_member_5	HGC27_STOMACH	0.85	0.97	0.4127	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	NPM1P24--SET	25	2	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	96	2310	0.22	0.01	0.2646	0.0212	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HGC27_STOMACH	0.01	0.22	0.2858	TRUE	0	0	0	434	0	FALSE	ACH-000847
HGC27_STOMACH	EIF3H--RP11-785H20.1	4	78	EIF3H	7051	chr8:117738255:-	RP11-785H20.1	22507	chr8:122897017:+	INCL_NON_REF_SPLICE	YES	1380	0	0.06	1	0.0423	0.8255	EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RP11-785H20.1->chr8:122896963-122916512:+	HGC27_STOMACH	0.06	1	0.8678	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	RP11-680G10.1--GSE1	21	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	77	1	0.26	0.2223	0.0635	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HGC27_STOMACH	0.26	1	0.2858	TRUE	465	1949	224	605	0	FALSE	ACH-000847
HGC27_STOMACH	SMCHD1--XPC	19	11	SMCHD1	47614	chr18:2796519:+	XPC	57164	chr3:14214562:-	ONLY_REF_SPLICE	YES	155	168	0.16	0.15	0.2011	0.1164	SMCHD1->chr18:2655737-2805015:+,structural_maintenance_of_chromosomes_flexible_hinge_domain_containing_1,XPC->Oncogene{Bushman},chr3:14186647-14220283:-,xeroderma_pigmentosum,_complementation_group_C	HGC27_STOMACH	0.15	0.16	0.3175	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	RP11-114H21.2--CTB-1I21.1	6	62	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	4	0	0.94	1	0.0635	0.6562	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	HGC27_STOMACH	0.94	1	0.7197	TRUE	0	2	0	12	2	TRUE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ND4L	4	69	MT-ND4	1466	chrM:11225:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	1187	0	0.06	1	0.0423	0.7303	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HGC27_STOMACH	0.06	1	0.7726	FALSE	344	827	44	306	0	FALSE	ACH-000847
HGC27_STOMACH	MT-TA--MT-TC	20	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2117	0.0529	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HGC27_STOMACH	1	1	0.2646	FALSE	462	80	0	856	0	FALSE	ACH-000847
HGC27_STOMACH	RP11-680G10.1--GSE1	18	11	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	14	1	0.67	0.1905	0.1164	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HGC27_STOMACH	0.67	1	0.3069	TRUE	458	1351	185	561	0	FALSE	ACH-000847
HGC27_STOMACH	KIAA1958--LINGO2	18	9	KIAA1958	1272	chr9:115249398:+	LINGO2	21125	chr9:28670278:-	INCL_NON_REF_SPLICE	YES	33	0	0.45	1	0.1905	0.0953	KIAA1958->KIAA1958,chr9:115249127-115431677:+,LINGO2->chr9:27948076-28670283:-,leucine_rich_repeat_and_Ig_domain_containing_2	HGC27_STOMACH	0.45	1	0.2858	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	17	10	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	23331	0	0	1	0.1799	0.1058	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.2857	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	13	25	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19411	84	0	0.31	0.1376	0.2646	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.31	0.4022	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	RP11-680H20.2--MTSS1	15	9	RP11-680H20.2	1128	chr11:93971443:+	MTSS1	28434	chr8:125568145:-	ONLY_REF_SPLICE	YES	0	98	1	0.2	0.1588	0.0953	RP11-680H20.2->chr11:93971316-94012372:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	HGC27_STOMACH	0.2	1	0.2541	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	10	24	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	22215	0	0	1	0.1058	0.254	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.3598	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	CCS--PACS1	11	19	CCS	1894	chr11:66361185:+	PACS1	23603	chr11:65994975:+	ONLY_REF_SPLICE	YES	170	76	0.15	0.28	0.1164	0.2011	CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	HGC27_STOMACH	0.15	0.28	0.3175	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	10	21	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21508	84	0	0.27	0.1058	0.2223	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.27	0.3281	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	RP11-6N13.1--CTD-2374C24.1	12	13	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.127	0.1376	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	HGC27_STOMACH	1	1	0.2646	TRUE	5	4	0	46	0	FALSE	ACH-000847
HGC27_STOMACH	HSPBP1--GRK5	15	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1588	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HGC27_STOMACH	1	1	0.1588	TRUE	1	39	0	134	39	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	14	4	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19046	11	0	0.62	0.1482	0.0423	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.62	0.1905	FALSE	231	205	14	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	10	19	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	22219	11	0	0.72	0.1058	0.2011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.72	0.3069	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	7	28	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2985	84	0.01	0.29	0.0741	0.2963	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0.01	0.29	0.3704	FALSE	216	209	16	281	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	6	28	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	21770	0	0	1	0.0635	0.2963	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.3598	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	3	39	MT-ND4	2226	chrM:11985:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	4983	0	0.01	1	0.0318	0.4128	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0.01	1	0.4446	FALSE	216	209	16	281	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	7	23	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	22090	1	0	0.97	0.0741	0.2434	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.97	0.3175	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	5	31	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	21575	0	0	1	0.0529	0.3281	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.381	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	5	30	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	20427	0	0	1	0.0529	0.3175	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.3704	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	PSMA3--RP11-349A22.3	5	30	PSMA3	2731	chr14:58714550:+	RP11-349A22.3	16341	chr14:58652045:+	INCL_NON_REF_SPLICE	YES	1605	0	0.02	1	0.0529	0.3175	LOCAL_REARRANGEMENT:+:[59324],PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3,RP11-349A22.3->chr14:58651294-58652225:+	HGC27_STOMACH	0.02	1	0.3704	TRUE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	EEF2--RPS28	12	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	9241	0	0	1	0.127	0.0106	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HGC27_STOMACH	0	1	0.1376	TRUE	0	0	0	100	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	3	37	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	34	0	0.54	1	0.0318	0.3916	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0.54	1	0.4234	FALSE	213	207	15	279	0	FALSE	ACH-000847
HGC27_STOMACH	AP000525.9--LA16c-60G3.6	12	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.127	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HGC27_STOMACH	1	1	0.127	TRUE	0	42	0	133	42	FALSE	ACH-000847
HGC27_STOMACH	FANCC--PTCH1	10	8	FANCC	1184	chr9:98079808:-	PTCH1	41958	chr9:98241429:-	ONLY_REF_SPLICE	YES	112	81	0.14	0.18	0.1058	0.0847	FANCC->ArcherDX_panel,Fanconi_anemia_complementation_group_C,FoundationOne_panel,Oncogene{Bushman},chr9:97861336-98079991:-,PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1	HGC27_STOMACH	0.14	0.18	0.1905	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	3	34	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	18607	0	0	1	0.0318	0.3598	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.3916	FALSE	231	215	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	5	25	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	21997	0	0	1	0.0529	0.2646	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.3175	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	4	29	MT-ND4	1818	chrM:11577:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	21828	0	0	1	0.0423	0.3069	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.3492	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	AL589743.1--RP11-536C10.17	11	0	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1164	0	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	HGC27_STOMACH	1	1	0.1164	TRUE	0	33	0	45	33	FALSE	ACH-000847
HGC27_STOMACH	COL1A1--NPM1	10	4	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	2144	7	0.01	0.67	0.1058	0.0423	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HGC27_STOMACH	0.01	0.67	0.1481	TRUE	0	0	0	31	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ND4L	6	19	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	68	0	0.27	1	0.0635	0.2011	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HGC27_STOMACH	0.27	1	0.2646	FALSE	344	826	44	306	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ND4L	7	14	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	82	0	0.2	1	0.0741	0.1482	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HGC27_STOMACH	0.2	1	0.2223	FALSE	344	826	44	306	0	FALSE	ACH-000847
HGC27_STOMACH	PSMA3--ACTR10	1	38	PSMA3	2731	chr14:58714550:+	ACTR10	18765	chr14:58674654:+	ONLY_REF_SPLICE	YES	1605	331	0.02	0.11	0.0106	0.4022	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[9799],PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3,ACTR10->actin-related_protein_10_homolog,chr14:58666798-58701750:+	HGC27_STOMACH	0.02	0.11	0.4128	TRUE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	FANCC--PTCH1	8	9	FANCC	1878	chr9:98079114:-	PTCH1	41958	chr9:98241429:-	ONLY_REF_SPLICE	YES	127	81	0.12	0.17	0.0847	0.0953	FANCC->ArcherDX_panel,Fanconi_anemia_complementation_group_C,FoundationOne_panel,Oncogene{Bushman},chr9:97861336-98079991:-,PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1	HGC27_STOMACH	0.12	0.17	0.18	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	RERE--SLC2A5	5	18	RERE	1484	chr1:8877219:-	SLC2A5	42034	chr1:9145225:-	ONLY_REF_SPLICE	YES	7	0	0.77	1	0.0529	0.1905	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC2A5->chr1:9095166-9148537:-,solute_carrier_family_2_member_5	HGC27_STOMACH	0.77	1	0.2434	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	SMYD3--RP11-488L18.8	8	4	SMYD3	8315	chr1:246490503:-	RP11-488L18.8	34373	chr1:247375694:-	ONLY_REF_SPLICE	YES	128	0	0.09	1	0.0847	0.0423	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,RP11-488L18.8->chr1:247373993-247405125:-	HGC27_STOMACH	0.09	1	0.127	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ND4L	3	23	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	15570	0	0	1	0.0318	0.2434	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HGC27_STOMACH	0	1	0.2752	FALSE	328	800	43	304	0	FALSE	ACH-000847
HGC27_STOMACH	NIT2--CMSS1	8	3	NIT2	4369	chr3:100060005:+	CMSS1	25937	chr3:99865817:+	ONLY_REF_SPLICE	YES	137	357	0.07	0.03	0.0847	0.0318	NIT2->chr3:100053545-100075710:+,nitrilase_family_member_2,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HGC27_STOMACH	0.03	0.07	0.1165	TRUE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	ACIN1--EFS	7	6	ACIN1	2706	chr14:23562688:-	EFS	27906	chr14:23830042:-	ONLY_REF_SPLICE	YES	235	62	0.05	0.17	0.0741	0.0635	{Klijn_CCL:Stomach=1},ACIN1->apoptotic_chromatin_condensation_inducer_1,chr14:23527773-23564823:-,EFS->chr14:23825611-23834961:-,embryonal_Fyn-associated_substrate	HGC27_STOMACH	0.05	0.17	0.1376	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	4	17	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	21793	882	0	0.02	0.0423	0.1799	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.02	0.2222	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	4	17	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	22140	1657	0	0.01	0.0423	0.1799	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.01	0.2222	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	3	21	MT-ND4	1762	chrM:11521:+	MT-ATP8	5456	chrM:8443:+	INCL_NON_REF_SPLICE	YES	21974	0	0	1	0.0318	0.2223	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.2541	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	RP11-344E13.3--UBBP4	5	13	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	128	0	0.12	1	0.0529	0.1376	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	HGC27_STOMACH	0.12	1	0.1905	TRUE	23	13	0	54	0	FALSE	ACH-000847
HGC27_STOMACH	CMC1--ZCWPW2	2	24	CMC1	2356	chr3:28295256:+	ZCWPW2	28090	chr3:28476601:+	ONLY_REF_SPLICE	YES	133	1	0.16	0.96	0.0212	0.254	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[24004],CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	HGC27_STOMACH	0.16	0.96	0.2752	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	SLC39A8--RP11-499E18.1	6	8	SLC39A8	9672	chr4:103225474:-	RP11-499E18.1	26100	chr4:103340145:-	ONLY_REF_SPLICE	YES	68	1	0.17	0.93	0.0635	0.0847	NEIGHBORS_OVERLAP:-:-:[12656],SLC39A8->chr4:103172198-103352415:-,solute_carrier_family_39_member_8,RP11-499E18.1->chr4:103339759-103371167:-	HGC27_STOMACH	0.17	0.93	0.1482	FALSE	0	0	0	2	0	FALSE	ACH-000847
HGC27_STOMACH	TATDN1--MTSS1	8	0	TATDN1	1531	chr8:125551169:-	MTSS1	28842	chr8:125597402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0847	0	{Klijn_CCL:Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[11332],TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	HGC27_STOMACH	1	1	0.0847	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	MAPT--SPECC1L	6	7	MAPT	1305	chr17:43972052:+	SPECC1L	36028	chr22:24698163:+	ONLY_REF_SPLICE	YES	24	129	0.35	0.09	0.0635	0.0741	MAPT->chr17:43971748-44105700:+,microtubule_associated_protein_tau,SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like	HGC27_STOMACH	0.09	0.35	0.1376	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	CMC1--ZCWPW2	2	22	CMC1	1229	chr3:28283303:+	ZCWPW2	28090	chr3:28476601:+	ONLY_REF_SPLICE	YES	130	1	0.16	0.96	0.0212	0.2328	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[24004],CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	HGC27_STOMACH	0.16	0.96	0.254	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	CTD-2008L17.1--RP11-456O19.2	6	6	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.0635	0.0635	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HGC27_STOMACH	0.8	1	0.127	FALSE	20	187	4	79	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	7	2	MT-ND4	1112	chrM:10871:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	8741	0	0	1	0.0741	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.0953	FALSE	230	193	14	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	3	18	MT-ND4	1759	chrM:11518:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	21864	1	0	0.95	0.0318	0.1905	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.95	0.2223	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	EIF1--RPS28	7	1	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	6	0	0.57	1	0.0741	0.0106	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HGC27_STOMACH	0.57	1	0.0847	TRUE	0	0	0	81	0	FALSE	ACH-000847
HGC27_STOMACH	MT-CO3--MT-ATP8	6	5	MT-CO3	1450	chrM:9656:+	MT-ATP8	4906	chrM:8487:+	INCL_NON_REF_SPLICE	YES	20847	1	0	0.92	0.0635	0.0529	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.92	0.1164	FALSE	16	100	1	11	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	3	17	MT-ND4	1844	chrM:11603:+	MT-ATP8	5503	chrM:8490:+	INCL_NON_REF_SPLICE	YES	22079	1129	0	0.02	0.0318	0.1799	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.02	0.2117	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	SART1--COX4I1	7	1	SART1	4179	chr11:65733250:+	COX4I1	15929	chr16:85834811:+	ONLY_REF_SPLICE	YES	312	226	0.03	0.03	0.0741	0.0106	SART1->chr11:65729160-65747299:+,squamous_cell_carcinoma_antigen_recognized_by_T-cells_1,COX4I1->chr16:85832239-85840650:+,cytochrome_c_oxidase_subunit_4I1	HGC27_STOMACH	0.03	0.03	0.0847	TRUE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	ARHGAP44--LINC00879	7	0	ARHGAP44	1353	chr17:12693208:+	LINC00879	42159	chr3:94857030:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0741	0	ARHGAP44->Rho_GTPase_activating_protein_44,chr17:12692856-12894960:+,LINC00879->chr3:94657016-94871353:+,long_intergenic_non-protein_coding_RNA_879	HGC27_STOMACH	1	1	0.0741	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	MT-CO3--MT-ATP8	5	8	MT-CO3	1550	chrM:9756:+	MT-ATP8	4891	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15773	0	0	1	0.0529	0.0847	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.1376	FALSE	16	100	1	11	0	FALSE	ACH-000847
HGC27_STOMACH	GPC6--PSAT1	6	3	GPC6	5492	chr13:94680148:+	PSAT1	19596	chr9:80915518:+	ONLY_REF_SPLICE	YES	32	1827	0.22	0	0.0635	0.0318	GPC6->chr13:93879095-95059655:+,glypican_6,PSAT1->chr9:80912059-80945009:+,phosphoserine_aminotransferase_1	HGC27_STOMACH	0	0.22	0.0953	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ND4L	5	7	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	198	0	0.06	1	0.0529	0.0741	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HGC27_STOMACH	0.06	1	0.127	FALSE	344	827	44	306	0	FALSE	ACH-000847
HGC27_STOMACH	MT-TA--MT-TC	5	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0.0741	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HGC27_STOMACH	1	1	0.127	FALSE	462	80	0	856	0	FALSE	ACH-000847
HGC27_STOMACH	RP11-6N13.1--CTD-2374C24.1	4	11	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0.1164	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	HGC27_STOMACH	1	1	0.1587	TRUE	5	12	0	42	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	4	10	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	23293	0	0	1	0.0423	0.1058	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.1481	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	6	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16111	84	0	0.09	0.0635	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.09	0.0847	FALSE	230	198	14	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	4	10	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	25924	826	0	0.02	0.0423	0.1058	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.02	0.1481	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ND4L	3	14	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	178	0	0.09	1	0.0318	0.1482	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HGC27_STOMACH	0.09	1	0.18	FALSE	344	827	44	306	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	5	5	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	22705	1657	0	0.01	0.0529	0.0529	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.01	0.1058	FALSE	231	205	14	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	6	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	17311	1954	0	0	0.0635	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0	0.0741	FALSE	231	204	14	283	0	FALSE	ACH-000847
HGC27_STOMACH	CMC1--ZCWPW2	2	16	CMC1	3625	chr3:28304871:+	ZCWPW2	31548	chr3:28520305:+	ONLY_REF_SPLICE	YES	127	12	0.12	0.6	0.0212	0.1693	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[24004],CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	HGC27_STOMACH	0.12	0.6	0.1905	FALSE	0	0	0	2	0	FALSE	ACH-000847
HGC27_STOMACH	MT-TA--MT-TC	5	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0.0423	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HGC27_STOMACH	1	1	0.0952	FALSE	462	80	0	856	0	FALSE	ACH-000847
HGC27_STOMACH	RP1-34H18.1--NAV3	5	3	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	14	1	0.36	0.0529	0.0318	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HGC27_STOMACH	0.36	1	0.0847	TRUE	254	575	65	124	0	FALSE	ACH-000847
HGC27_STOMACH	CCS--PACS1	4	6	CCS	1480	chr11:66360771:+	PACS1	23603	chr11:65994975:+	ONLY_REF_SPLICE	YES	58	76	0.15	0.12	0.0423	0.0635	CCS->chr11:66360292-66373490:+,copper_chaperone_for_superoxide_dismutase,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	HGC27_STOMACH	0.12	0.15	0.1058	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	3	10	MT-ND4	1469	chrM:11228:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	23635	0	0	1	0.0318	0.1058	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.1376	FALSE	231	217	16	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	5	2	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	15784	11	0	0.39	0.0529	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.39	0.0741	FALSE	230	193	14	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	5	2	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	NO	16200	585	0	0.01	0.0529	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.01	0.0741	FALSE	231	204	14	283	0	FALSE	ACH-000847
HGC27_STOMACH	EIF3H--RP11-785H20.1	4	5	EIF3H	7051	chr8:117738255:-	RP11-785H20.1	24767	chr8:122915678:+	ONLY_REF_SPLICE	YES	1380	0	0.01	1	0.0423	0.0529	EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RP11-785H20.1->chr8:122896963-122916512:+	HGC27_STOMACH	0.01	1	0.0952	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	MT-CO1--COL3A1	5	1	MT-CO1	1605	chrM:6508:+	COL3A1	28798	chr2:189872273:+	INCL_NON_REF_SPLICE	YES	23671	2863	0	0	0.0529	0.0106	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	HGC27_STOMACH	0	0	0.0635	FALSE	0	0	0	12	0	FALSE	ACH-000847
HGC27_STOMACH	PCAT1--RP11-382A18.2	4	5	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.0423	0.0529	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	HGC27_STOMACH	0.64	1	0.0952	TRUE	4	84	1	46	0	FALSE	ACH-000847
HGC27_STOMACH	RP11-680H20.2--MTSS1	1	17	RP11-680H20.2	1128	chr11:93971443:+	MTSS1	27984	chr8:125568595:-	ONLY_REF_SPLICE	YES	0	67	1	0.21	0.0106	0.1799	RP11-680H20.2->chr11:93971316-94012372:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	HGC27_STOMACH	0.21	1	0.1905	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	EIF1--RPS28	5	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HGC27_STOMACH	1	1	0.0529	TRUE	0	0	0	81	0	FALSE	ACH-000847
HGC27_STOMACH	MT-CO3--MT-ATP8	5	0	MT-CO3	1075	chrM:9281:+	MT-ATP8	4817	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	1	1	0.0529	FALSE	16	100	1	11	0	FALSE	ACH-000847
HGC27_STOMACH	MT-CO3--MT-ATP8	5	0	MT-CO3	1033	chrM:9239:+	MT-ATP8	4929	chrM:8510:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	1	1	0.0529	FALSE	16	100	1	11	0	FALSE	ACH-000847
HGC27_STOMACH	CTD-2008L17.1--RP11-456O19.2	4	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0423	0.0318	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HGC27_STOMACH	0.7	1	0.0741	FALSE	33	240	4	98	0	FALSE	ACH-000847
HGC27_STOMACH	EEF2--RPLP1	4	3	EEF2	9763	chr19:3976549:-	RPLP1	13293	chr15:69745157:+	INCL_NON_REF_SPLICE	YES	6705	0	0	1	0.0423	0.0318	GTEx&tcga_normals:2/3694=0.05%,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	HGC27_STOMACH	0	1	0.0741	FALSE	0	0	0	3	0	FALSE	ACH-000847
HGC27_STOMACH	MT-CO3--MT-ATP8	3	7	MT-CO3	1369	chrM:9575:+	MT-ATP8	4860	chrM:8441:+	INCL_NON_REF_SPLICE	NO	21150	0	0	1	0.0318	0.0741	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.1059	FALSE	16	100	1	11	0	FALSE	ACH-000847
HGC27_STOMACH	RERE--SLC2A5	3	7	RERE	1484	chr1:8877219:-	SLC2A5	45894	chr1:9129653:-	ONLY_REF_SPLICE	YES	7	17	0.59	0.37	0.0318	0.0741	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC2A5->chr1:9095166-9148537:-,solute_carrier_family_2_member_5	HGC27_STOMACH	0.37	0.59	0.1059	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	RPIA--CTD-2307P3.1	4	3	RPIA	4517	chr2:89028855:+	CTD-2307P3.1	15812	chr14:43172308:+	ONLY_REF_SPLICE	YES	276	0	0.02	1	0.0423	0.0318	RPIA->chr2:88991162-89050452:+,ribose_5-phosphate_isomerase_A,CTD-2307P3.1->chr14:42832186-43172858:+	HGC27_STOMACH	0.02	1	0.0741	TRUE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	NPM1P24--SET	4	2	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	NO	96	2110	0.06	0	0.0423	0.0212	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HGC27_STOMACH	0	0.06	0.0635	FALSE	0	0	0	434	0	FALSE	ACH-000847
HGC27_STOMACH	VDAC2--ADK	3	6	VDAC2	3145	chr10:76972056:+	ADK	26798	chr10:76349040:+	ONLY_REF_SPLICE	YES	1641	350	0.01	0.03	0.0318	0.0635	VDAC2->chr10:76969912-76991206:+,voltage_dependent_anion_channel_2,ADK->adenosine_kinase,chr10:75910960-76469061:+	HGC27_STOMACH	0.01	0.03	0.0953	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	MT-CO3--MT-ATP8	4	1	MT-CO3	1123	chrM:9329:+	MT-ATP8	4833	chrM:8414:+	INCL_NON_REF_SPLICE	NO	4782	0	0	1	0.0423	0.0106	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.0529	FALSE	16	100	1	11	0	FALSE	ACH-000847
HGC27_STOMACH	CMC1--ZCWPW2	2	8	CMC1	3625	chr3:28304871:+	ZCWPW2	32666	chr3:28533618:+	ONLY_REF_SPLICE	YES	127	12	0.07	0.45	0.0212	0.0847	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[24004],CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	HGC27_STOMACH	0.07	0.45	0.1059	FALSE	0	2	0	2	0	FALSE	ACH-000847
HGC27_STOMACH	COA1--SEMA3D	3	4	COA1	17190	chr7:43679048:-	SEMA3D	32013	chr7:84702397:-	ONLY_REF_SPLICE	YES	159	47	0.04	0.13	0.0318	0.0423	COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,SEMA3D->chr7:84624869-84816171:-,semaphorin_3D	HGC27_STOMACH	0.04	0.13	0.0741	TRUE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	COL1A1--NPM1	3	4	COL1A1	13029	chr17:48266746:-	NPM1	22878	chr5:170814872:+	INCL_NON_REF_SPLICE	YES	2135	12	0	0.37	0.0318	0.0423	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HGC27_STOMACH	0	0.37	0.0741	FALSE	0	0	0	31	0	FALSE	ACH-000847
HGC27_STOMACH	CTA-392E5.1--ATP6V0D2	4	0	CTA-392E5.1	1081	chr8:86852014:+	ATP6V0D2	13804	chr8:87111133:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	NEIGHBORS[36240],CTA-392E5.1->chr8:86851934-86963312:+,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	HGC27_STOMACH	1	1	0.0423	FALSE	0	7	0	2	0	FALSE	ACH-000847
HGC27_STOMACH	EIF1--RPL5	4	0	EIF1	1103	chr17:39845239:+	RPL5	7818	chr1:93297615:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	HGC27_STOMACH	1	1	0.0423	TRUE	0	0	0	39	0	FALSE	ACH-000847
HGC27_STOMACH	VIM--RPS28	4	0	VIM	2129	chr10:17271386:+	RPS28	12568	chr19:8386405:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	VIM->chr10:17270258-17279592:+,vimentin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HGC27_STOMACH	1	1	0.0423	TRUE	0	0	0	4	0	TRUE	ACH-000847
HGC27_STOMACH	MT-CO3--MT-ATP8	3	3	MT-CO3	1140	chrM:9346:+	MT-ATP8	4859	chrM:8440:+	INCL_NON_REF_SPLICE	YES	7817	0	0	1	0.0318	0.0318	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.0636	FALSE	16	100	1	11	0	FALSE	ACH-000847
HGC27_STOMACH	BIRC6--SLC30A6	3	2	BIRC6	12083	chr2:32641231:+	SLC30A6	98938	chr2:32431955:+	ONLY_REF_SPLICE	YES	19	84	0.21	0.06	0.0318	0.0212	BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,SLC30A6->chr2:32390933-32449448:+,solute_carrier_family_30_member_6	HGC27_STOMACH	0.06	0.21	0.053	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	8312	0	0	1	0.0318	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.053	FALSE	230	193	14	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	1253	chrM:11012:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17044	84	0	0.06	0.0318	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.06	0.053	FALSE	231	204	14	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	1109	chrM:10868:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	8584	0	0	1	0.0318	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.053	FALSE	230	193	14	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	1268	chrM:11027:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	18828	8	0	0.38	0.0318	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.38	0.053	FALSE	231	205	14	283	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11080	84	0	0.06	0.0318	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0.06	0.053	FALSE	230	193	14	283	0	FALSE	ACH-000847
HGC27_STOMACH	NPM1P24--SET	3	2	NPM1P24	1533	chr10:74677760:-	SET	12301	chr9:131456196:+	INCL_NON_REF_SPLICE	YES	96	2153	0.05	0	0.0318	0.0212	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HGC27_STOMACH	0	0.05	0.053	FALSE	0	0	0	434	0	FALSE	ACH-000847
HGC27_STOMACH	CMC1--ZCWPW2	2	5	CMC1	1229	chr3:28283303:+	ZCWPW2	32666	chr3:28533618:+	ONLY_REF_SPLICE	YES	130	12	0.05	0.37	0.0212	0.0529	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[24004],CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	HGC27_STOMACH	0.05	0.37	0.0741	FALSE	0	0	0	2	0	FALSE	ACH-000847
HGC27_STOMACH	MT-CO3--MT-ATP8	3	1	MT-CO3	1124	chrM:9330:+	MT-ATP8	4846	chrM:8427:+	INCL_NON_REF_SPLICE	YES	5072	0	0	1	0.0318	0.0106	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	1	0.0424	FALSE	16	100	1	11	0	FALSE	ACH-000847
HGC27_STOMACH	MT-ND4--MT-ATP8	3	1	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	18771	1881	0	0	0.0318	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	0	0	0.0424	FALSE	231	205	14	283	0	FALSE	ACH-000847
HGC27_STOMACH	CSMD3--PVT1	3	0	CSMD3	2839	chr8:114388967:-	PVT1	115603	chr8:129108764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	CSMD3->CUB_and_Sushi_multiple_domains_3,Oncogene{Bushman},chr8:113235157-114449328:-,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	HGC27_STOMACH	1	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	EIF1--RPS28	3	0	EIF1	1121	chr17:39845257:+	RPS28	8168	chr19:8386425:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HGC27_STOMACH	1	1	0.0318	TRUE	0	0	0	81	0	FALSE	ACH-000847
HGC27_STOMACH	MT-CO3--MT-ATP8	3	0	MT-CO3	1107	chrM:9313:+	MT-ATP8	4841	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HGC27_STOMACH	1	1	0.0318	FALSE	16	100	1	11	0	FALSE	ACH-000847
HGC27_STOMACH	PRDM16--SKI	3	0	PRDM16	4812	chr1:3160701:+	SKI	35669	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1]},PRDM16->Oncogene{Bushman},PR_domain_16,chr1:2985732-3355185:+,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	HGC27_STOMACH	1	1	0.0318	TRUE	1	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	SLC39A8--RP11-499E18.1	3	0	SLC39A8	1197	chr4:103352219:-	RP11-499E18.1	25729	chr4:103340516:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	NEIGHBORS_OVERLAP:-:-:[12656],SLC39A8->chr4:103172198-103352415:-,solute_carrier_family_39_member_8,RP11-499E18.1->chr4:103339759-103371167:-	HGC27_STOMACH	1	1	0.0318	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	SLC7A5--RPL39	3	0	SLC7A5	8058	chr16:87871484:-	RPL39	17596	chrX:118925591:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	HGC27_STOMACH	1	1	0.0318	TRUE	0	0	0	5	0	TRUE	ACH-000847
HGC27_STOMACH	VIM--RPS28	3	0	VIM	2181	chr10:17271438:+	RPS28	12703	chr19:8386540:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	VIM->chr10:17270258-17279592:+,vimentin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HGC27_STOMACH	1	1	0.0318	TRUE	0	0	0	4	0	TRUE	ACH-000847
HGC27_STOMACH	VIM--RPS28	3	0	VIM	2114	chr10:17271371:+	RPS28	12553	chr19:8386390:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	VIM->chr10:17270258-17279592:+,vimentin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HGC27_STOMACH	1	1	0.0318	TRUE	0	0	0	4	0	TRUE	ACH-000847
HGC27_STOMACH	MAPT--SPECC1L	1	7	MAPT	1305	chr17:43972052:+	SPECC1L	34924	chr22:24672668:+	ONLY_REF_SPLICE	NO	24	143	0.25	0.05	0.0106	0.0741	MAPT->chr17:43971748-44105700:+,microtubule_associated_protein_tau,SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like	HGC27_STOMACH	0.05	0.25	0.0847	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	LINC00648--MDGA2	2	2	LINC00648	2159	chr14:48259109:-	MDGA2	26120	chr14:47504481:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0212	0.0212	LOCAL_INVERSION:-:-,chr14:[90000],LINC00648->chr14:48234157-48264295:-,long_intergenic_non-protein_coding_RNA_648,MDGA2->MAM_domain_containing_glycosylphosphatidylinositol_anchor_2,chr14:47308826-48144157:-,chr14:47311134-48143999:-	HGC27_STOMACH	0.8	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	RPIA--CTD-2307P3.1	2	2	RPIA	3457	chr2:88999582:+	CTD-2307P3.1	15812	chr14:43172308:+	ONLY_REF_SPLICE	YES	297	0	0.01	1	0.0212	0.0212	RPIA->chr2:88991162-89050452:+,ribose_5-phosphate_isomerase_A,CTD-2307P3.1->chr14:42832186-43172858:+	HGC27_STOMACH	0.01	1	0.0424	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	SIPA1L3--CTD-2537O9.1	2	2	SIPA1L3	1131	chr19:38397998:+	CTD-2537O9.1	40355	chr11:84473154:+	ONLY_REF_SPLICE	YES	21	0	0.16	1	0.0212	0.0212	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,CTD-2537O9.1->chr11:84431869-84511744:+	HGC27_STOMACH	0.16	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	LINC00478--USP25	2	1	LINC00478	5289	chr21:17603435:+	USP25	49174	chr21:17236587:+	ONLY_REF_SPLICE	YES	39	162	0.07	0.02	0.0212	0.0106	LINC00478->chr21:17442842-17999716:+,USP25->chr21:17102344-17252377:+,ubiquitin_specific_peptidase_25	HGC27_STOMACH	0.02	0.07	0.0318	TRUE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	NDUFA4--PHF14	2	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	1690	246	0	0.01	0.0212	0.0106	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HGC27_STOMACH	0	0.01	0.0318	FALSE	19	32	3	60	0	FALSE	ACH-000847
HGC27_STOMACH	RP11-120D5.1--MID1	1	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	15	0.86	0.29	0.0106	0.0529	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HGC27_STOMACH	0.29	0.86	0.0635	FALSE	16	356	14	466	0	FALSE	ACH-000847
HGC27_STOMACH	RP11-353N4.6--SEC22B	2	1	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	134	457	0.02	0.01	0.0212	0.0106	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HGC27_STOMACH	0.01	0.02	0.0318	FALSE	49	42	7	43	0	FALSE	ACH-000847
HGC27_STOMACH	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0.0106	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HGC27_STOMACH	1	1	0.0318	FALSE	515	4851	409	746	0	FALSE	ACH-000847
HGC27_STOMACH	SNRPA1--TARSL2	2	1	SNRPA1	2804	chr15:101833230:-	TARSL2	18958	chr15:102252204:-	ONLY_REF_SPLICE	YES	701	30	0	0.09	0.0212	0.0106	SNRPA1->chr15:101821715-101835487:-,small_nuclear_ribonucleoprotein_polypeptide_A',TARSL2->chr15:102193801-102264807:-,threonyl-tRNA_synthetase-like_2	HGC27_STOMACH	0	0.09	0.0318	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	C17orf76-AS1--PSMG3	2	0	C17orf76-AS1	1593	chr17:16342728:+	PSMG3	14848	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	C17orf76-AS1->chr17:16342136-16381992:+,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	2	0	TRUE	ACH-000847
HGC27_STOMACH	CSMD3--PVT1	2	0	CSMD3	1423	chr8:114448906:-	PVT1	115603	chr8:129108764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	CSMD3->CUB_and_Sushi_multiple_domains_3,Oncogene{Bushman},chr8:113235157-114449328:-,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	CTA-392E5.1--ATP6V0D2	2	0	CTA-392E5.1	1081	chr8:86852014:+	ATP6V0D2	13293	chr8:87110622:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	NEIGHBORS[36240],CTA-392E5.1->chr8:86851934-86963312:+,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	HGC27_STOMACH	1	1	0.0212	FALSE	0	7	0	2	0	FALSE	ACH-000847
HGC27_STOMACH	DANCR--GNB1	2	0	DANCR	1530	chr4:53579126:+	GNB1	9431	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	8	0	TRUE	ACH-000847
HGC27_STOMACH	DANCR--WHSC1	2	0	DANCR	1530	chr4:53579126:+	WHSC1	13532	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	HGC27_STOMACH	1	1	0.0212	TRUE	0	9	0	44	1	FALSE	ACH-000847
HGC27_STOMACH	EVI5--USP33	2	0	EVI5	19275	chr1:93089733:-	USP33	35663	chr1:78207433:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	EVI5->chr1:92974253-93257961:-,ecotropic_viral_integration_site_5,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	FGFR1OP2--PCID2	2	0	FGFR1OP2	1328	chr12:27091643:+	PCID2	17348	chr13:113854830:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,PCID2->PCI_domain_containing_2,chr13:113831891-113863029:-	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	MACROD1--ZBTB7A	2	0	MACROD1	3565	chr11:63918711:-	ZBTB7A	16398	chr19:4055245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-,ZBTB7A->chr19:4044362-4066943:-,zinc_finger_and_BTB_domain_containing_7A	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	MTAP--CDKN2A	2	0	MTAP	9899	chr9:21854869:+	CDKN2A	29087	chr9:21971207:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	LOCAL_INVERSION:+:-:[36105],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	PACS2--PCNXL4	2	0	PACS2	5362	chr14:105814917:+	PCNXL4	40146	chr14:60582437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	PACS2->chr14:105766900-105864484:+,phosphofurin_acidic_cluster_sorting_protein_2,PCNXL4->chr14:60558629-60635851:+	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	SUMF2--SMURF1	2	0	SUMF2	1377	chr7:56132071:+	SMURF1	19705	chr7:98655174:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2,SMURF1->SMAD_specific_E3_ubiquitin_protein_ligase_1,chr7:98625061-98741723:-	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	TMEM18--FKBP8	2	0	TMEM18	1151	chr2:677289:-	FKBP8	13709	chr19:18652805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	TMEM18->chr2:667335-677439:-,transmembrane_protein_18,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000847
HGC27_STOMACH	TMEM18--PTMA	2	0	TMEM18	1151	chr2:677289:-	PTMA	16051	chr2:232576058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	TMEM18->chr2:667335-677439:-,transmembrane_protein_18,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	HGC27_STOMACH	1	1	0.0212	TRUE	0	0	0	2	0	TRUE	ACH-000847
HGC27_STOMACH	U2AF1--PKNOX1	2	0	U2AF1	1137	chr21:44527561:-	PKNOX1	18796	chr21:44424436:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_INVERSION:-:+:[59375],U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-,PKNOX1->Oncogene{Bushman},PBX/knotted_1_homeobox_1,chr21:44394620-44453691:+	HGC27_STOMACH	1	1	0.0212	TRUE	0	1	0	3	0	TRUE	ACH-000847
HGC27_STOMACH	RP11-120D5.1--MID1	1	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	2	3	0.67	0.57	0.0106	0.0318	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HGC27_STOMACH	0.57	0.67	0.0424	FALSE	0	5	0	14	0	FALSE	ACH-000847
HGC27_STOMACH	WTIP--GPI	1	3	WTIP	7445	chr19:34986676:+	GPI	31733	chr19:34887206:+	ONLY_REF_SPLICE	NO	13	2944	0.24	0	0.0106	0.0318	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[78813],WTIP->Wilms_tumor_1_interacting_protein,chr19:34971874-34997258:+,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	HGC27_STOMACH	0	0.24	0.0424	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	BCAS4--BCAS3	1	2	BCAS4	1280	chr20:49411710:+	BCAS3	58366	chr17:59445688:+	ONLY_REF_SPLICE	YES	86	42	0.03	0.07	0.0106	0.0212	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	HGC27_STOMACH	0.03	0.07	0.0318	TRUE	0	1	1	3	0	FALSE	ACH-000847
HGC27_STOMACH	BIRC6--SLC30A6	1	2	BIRC6	12083	chr2:32641231:+	SLC30A6	101055	chr2:32445282:+	ONLY_REF_SPLICE	YES	19	97	0.14	0.03	0.0106	0.0212	BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,SLC30A6->chr2:32390933-32449448:+,solute_carrier_family_30_member_6	HGC27_STOMACH	0.03	0.14	0.0318	TRUE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	CSMD3--PVT1	1	2	CSMD3	1423	chr8:114448906:-	PVT1	106908	chr8:129001408:+	ONLY_REF_SPLICE	NO	233	315	0.01	0.01	0.0106	0.0212	CSMD3->CUB_and_Sushi_multiple_domains_3,Oncogene{Bushman},chr8:113235157-114449328:-,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	HGC27_STOMACH	0.01	0.01	0.0318	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	CSMD3--PVT1	1	2	CSMD3	2839	chr8:114388967:-	PVT1	113305	chr8:129082406:+	ONLY_REF_SPLICE	NO	305	242	0.01	0.01	0.0106	0.0212	CSMD3->CUB_and_Sushi_multiple_domains_3,Oncogene{Bushman},chr8:113235157-114449328:-,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	HGC27_STOMACH	0.01	0.01	0.0318	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	DANCR--SNX5	1	2	DANCR	1530	chr4:53579126:+	SNX5	10453	chr20:17941969:-	ONLY_REF_SPLICE	YES	2489	1274	0	0	0.0106	0.0212	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	HGC27_STOMACH	0	0	0.0318	FALSE	0	0	0	7	0	FALSE	ACH-000847
HGC27_STOMACH	ACTR2--SLC1A4	1	1	ACTR2	1205	chr2:65455091:+	SLC1A4	29077	chr2:65248046:+	ONLY_REF_SPLICE	YES	1172	57	0	0.03	0.0106	0.0106	ACTR2->ARP2_actin-related_protein_2_homolog_(yeast),chr2:65454887-65498387:+,SLC1A4->chr2:65215611-65250999:+,solute_carrier_family_1_member_4	HGC27_STOMACH	0	0.03	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	ADAM9--TACC1	1	1	ADAM9	16676	chr8:38913291:+	TACC1	41335	chr8:38677040:+	ONLY_REF_SPLICE	YES	236	106	0.01	0.02	0.0106	0.0106	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	HGC27_STOMACH	0.01	0.02	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	ATAD3B--SSU72	1	1	ATAD3B	14283	chr1:1426051:+	SSU72	22040	chr1:1500296:-	ONLY_REF_SPLICE	YES	132	622	0.01	0	0.0106	0.0106	LOCAL_INVERSION:+:-:[43825],ATAD3B->ATPase_family,_AAA_domain_containing_3B,chr1:1407143-1433228:+,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	HGC27_STOMACH	0	0.01	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	CANX--ERMAP	1	1	CANX	11365	chr5:179137066:+	ERMAP	29064	chr1:43296115:+	ONLY_REF_SPLICE	YES	2154	54	0	0.04	0.0106	0.0106	CANX->calnexin,chr5:179105629-179157926:+,ERMAP->chr1:43282795-43310660:+,erythroblast_membrane_associated_protein_(Scianna_blood_group)	HGC27_STOMACH	0	0.04	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	EPS15--FAF1	1	1	EPS15	8658	chr1:51926763:-	FAF1	54701	chr1:51032903:-	ONLY_REF_SPLICE	YES	44	282	0.04	0.01	0.0106	0.0106	EPS15->Oncogene{Bushman},chr1:51819935-51985000:-,epidermal_growth_factor_receptor_pathway_substrate_15,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	HGC27_STOMACH	0.01	0.04	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	GATS--PILRB	1	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	5	160	0.29	0.01	0.0106	0.0106	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	HGC27_STOMACH	0.01	0.29	0.0212	FALSE	57	41	2	35	0	FALSE	ACH-000847
HGC27_STOMACH	RERE--SLC2A5	1	1	RERE	5242	chr1:8763114:-	SLC2A5	49949	chr1:9107793:-	ONLY_REF_SPLICE	YES	31	28	0.06	0.07	0.0106	0.0106	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC2A5->chr1:9095166-9148537:-,solute_carrier_family_2_member_5	HGC27_STOMACH	0.06	0.07	0.0212	TRUE	0	1	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	RP11-120I21.2--RALYL	1	1	RP11-120I21.2	3279	chr8:84996478:+	RALYL	12120	chr8:85441534:+	ONLY_REF_SPLICE	YES	2	10	0.5	0.17	0.0106	0.0106	NEIGHBORS[42504],RP11-120I21.2->chr8:84824948-85052518:+,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	HGC27_STOMACH	0.17	0.5	0.0212	FALSE	0	8	1	4	0	FALSE	ACH-000847
HGC27_STOMACH	RP11-353N4.6--SEC22B	1	1	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	NO	134	429	0.01	0	0.0106	0.0106	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HGC27_STOMACH	0	0.01	0.0212	FALSE	33	36	9	21	0	FALSE	ACH-000847
HGC27_STOMACH	RPL5--CCDC18	1	1	RPL5	3889	chr1:93300470:+	CCDC18	15333	chr1:93651902:+	ONLY_REF_SPLICE	NO	9789	43	0	0.04	0.0106	0.0106	RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5,CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18	HGC27_STOMACH	0	0.04	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	SLC39A8--RP11-499E18.1	1	1	SLC39A8	7877	chr4:103228593:-	RP11-499E18.1	26100	chr4:103340145:-	ONLY_REF_SPLICE	YES	51	1	0.04	0.67	0.0106	0.0106	NEIGHBORS_OVERLAP:-:-:[12656],SLC39A8->chr4:103172198-103352415:-,solute_carrier_family_39_member_8,RP11-499E18.1->chr4:103339759-103371167:-	HGC27_STOMACH	0.04	0.67	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	SNHG8--UBAP2	1	1	SNHG8	1429	chr4:119200292:+	UBAP2	22950	chr9:33948585:-	ONLY_REF_SPLICE	YES	444	136	0	0.01	0.0106	0.0106	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	HGC27_STOMACH	0	0.01	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000847
HGC27_STOMACH	TAF3--ATP5C1	1	1	TAF3	2615	chr10:7866523:+	ATP5C1	16733	chr10:7839010:+	ONLY_REF_SPLICE	YES	33	1553	0.06	0	0.0106	0.0106	GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[10689],TAF3->TATA-box_binding_protein_associated_factor_3,chr10:7860467-8058590:+,ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+	HGC27_STOMACH	0	0.06	0.0212	FALSE	0	2	0	4	2	FALSE	ACH-000847
HGC27_STOMACH	TBK1--XPOT	1	1	TBK1	2877	chr12:64849737:+	XPOT	34625	chr12:64818379:+	ONLY_REF_SPLICE	YES	63	416	0.03	0	0.0106	0.0106	LOCAL_REARRANGEMENT:+:[753],TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,XPOT->chr12:64798130-64844907:+,exportin_for_tRNA	HGC27_STOMACH	0	0.03	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000847
NCIH1869_LUNG	CYB561A3--CXCL16	147	0	CYB561A3	5097	chr11:61125675:-	CXCL16	22184	chr17:4637289:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2879	0	GTEx&tcga_normals:41/3694=1.11%,GTEx_FI:{Lung=[count:16=pct:9.6],Blood=[count:10=pct:5.7],Spleen=[count:10=pct:8.9],Whole_Blood=[count:8=pct:6.1],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Liver=[count:2=pct:1.7],Breast=[count:2=pct:1.8],Esophagus=[count:2=pct:0.5],Stomach=[count:1=pct:1.1],Salivary_Gland=[count:1=pct:2.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=17;pct=0.20%;dist=Whole_Blood=5,Lung=4,Spleen=4,Artery_-_Aorta=1,Brain_-_Hippocampus=1,Artery_-_Coronary=1,Liver=1},CYB561A3->chr11:61116217-61129771:-,cytochrome_b561_family_member_A3,CXCL16->C-X-C_motif_chemokine_ligand_16,chr17:4636821-4643217:-	NCIH1869_LUNG	1	1	1.2879	TRUE	43	61	0	4	0	FALSE	ACH-000894
NCIH1869_LUNG	SMURF2--LRRC37A3	81	30	SMURF2	12083	chr17:62574610:-	LRRC37A3	43724	chr17:62865284:-	ONLY_REF_SPLICE	YES	112	2	0.5	0.98	0.7097	0.2628	{Klijn_CCL:Lung=1},SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	NCIH1869_LUNG	0.5	0.98	0.9725	TRUE	0	1	0	1	1	TRUE	ACH-000894
NCIH1869_LUNG	MT-ND6--MT-TE	71	8	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6221	0.0701	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1869_LUNG	1	1	0.6922	FALSE	499	1288	110	792	0	FALSE	ACH-000894
NCIH1869_LUNG	PLXDC1--TAF13	72	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6308	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH1869_LUNG	1	1	0.6308	TRUE	7	10	0	216	0	FALSE	ACH-000894
NCIH1869_LUNG	TIMM23B--LINC00843	53	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4644	0.1227	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1869_LUNG	1	1	0.5871	TRUE	508	994	45	981	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND6--MT-TE	44	21	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.93	1	0.3855	0.184	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1869_LUNG	0.93	1	0.5695	FALSE	499	1288	110	792	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	7	164	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	12	0	0.93	1	0.0613	1.4369	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.93	1	1.4982	FALSE	344	826	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	3	171	MT-ND4	1747	chrM:11506:+	MT-ND4L	5523	chrM:10614:+	INCL_NON_REF_SPLICE	YES	4351	1	0.04	0.99	0.0263	1.4982	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.04	0.99	1.5245	FALSE	344	827	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	4	164	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	11	1	0.94	0.99	0.035	1.4369	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.94	0.99	1.4719	FALSE	344	826	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	4	163	MT-ND4	1110	chrM:10869:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	11	1	0.94	0.99	0.035	1.4281	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.94	0.99	1.4631	FALSE	344	826	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	3	167	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	23	0	0.88	1	0.0263	1.4632	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.88	1	1.4895	FALSE	344	826	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	3	165	MT-ND4	1159	chrM:10918:+	MT-ND4L	5503	chrM:10594:+	INCL_NON_REF_SPLICE	YES	12	1	0.93	0.99	0.0263	1.4456	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.93	0.99	1.4719	FALSE	344	826	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	10	120	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	6121	0	0.02	1	0.0876	1.0514	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.02	1	1.139	FALSE	344	827	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-TA--MT-TC	37	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3242	0.0526	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1869_LUNG	1	1	0.3768	FALSE	462	80	0	856	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	7	120	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	1	0.95	0.99	0.0613	1.0514	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.95	0.99	1.1127	FALSE	344	821	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND6--MT-TE	32	9	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2804	0.0789	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1869_LUNG	1	1	0.3593	FALSE	499	1288	110	792	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	4	113	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	50	0	0.7	1	0.035	0.99	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.7	1	1.025	FALSE	344	827	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	3	113	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	43	0	0.73	1	0.0263	0.99	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.73	1	1.0163	FALSE	344	827	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	TIMM23--RP11-464F9.1	28	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	396	0	0.07	1	0.2453	0.0088	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1869_LUNG	0.07	1	0.2541	TRUE	519	3926	326	965	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	18	36	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	14659	0	0	1	0.1577	0.3154	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0	1	0.4731	FALSE	328	800	43	304	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND6--MT-TE	12	37	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.91	1	0.1051	0.3242	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1869_LUNG	0.91	1	0.4293	FALSE	499	1288	110	792	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-CO3--MT-ATP6	4	62	MT-CO3	1220	chrM:9426:+	MT-ATP6	5176	chrM:8918:+	INCL_NON_REF_SPLICE	YES	10	90	0.87	0.42	0.035	0.5432	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1869_LUNG	0.42	0.87	0.5782	FALSE	189	492	56	216	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-CO3--MT-ATP6	4	61	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	11	0.93	0.86	0.035	0.5344	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1869_LUNG	0.86	0.93	0.5694	FALSE	189	492	56	216	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-CO3--MT-ATP6	3	61	MT-CO3	1525	chrM:9731:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	13	11	0.83	0.85	0.0263	0.5344	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1869_LUNG	0.83	0.85	0.5607	FALSE	189	492	56	216	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-CO3--MT-ATP6	3	61	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	10	10	0.86	0.86	0.0263	0.5344	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1869_LUNG	0.86	0.86	0.5607	FALSE	189	492	56	216	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-CO3--MT-ATP6	3	61	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	4	84	0.94	0.43	0.0263	0.5344	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1869_LUNG	0.43	0.94	0.5607	FALSE	189	492	56	216	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	9	36	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	495	0	0.08	1	0.0789	0.3154	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.08	1	0.3943	FALSE	344	827	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	4	55	MT-ND4	1779	chrM:11538:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	5966	0	0.01	1	0.035	0.4819	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.01	1	0.5169	FALSE	344	827	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-CO3--MT-ATP6	3	52	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	8	1	0.87	0.0263	0.4556	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1869_LUNG	0.87	1	0.4819	FALSE	189	492	56	216	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND6--MT-TE	3	52	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0263	0.4556	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1869_LUNG	0.98	1	0.4819	FALSE	499	1288	110	792	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-CO3--MT-ATP6	3	50	MT-CO3	1089	chrM:9295:+	MT-ATP6	5156	chrM:8898:+	INCL_NON_REF_SPLICE	YES	0	68	1	0.44	0.0263	0.4381	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1869_LUNG	0.44	1	0.4644	FALSE	189	492	56	216	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND6--MT-TE	8	25	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0.219	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1869_LUNG	1	1	0.2891	FALSE	499	1288	110	792	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND6--MT-TE	5	37	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.0438	0.3242	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1869_LUNG	0.91	1	0.368	FALSE	499	1288	110	792	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	5	36	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	16	0	0.72	1	0.0438	0.3154	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.72	1	0.3592	FALSE	344	826	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	OR51S1--TP53I11	14	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1227	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH1869_LUNG	1	1	0.1227	TRUE	402	216	10	229	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND6--MT-TE	5	35	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.0438	0.3067	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1869_LUNG	0.91	1	0.3505	FALSE	499	1288	110	792	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND1--MT-TL1	4	36	MT-ND1	1155	chrM:3461:+	MT-TL1	4983	chrM:3256:+	INCL_NON_REF_SPLICE	YES	8	0	0.83	1	0.035	0.3154	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH1869_LUNG	0.83	1	0.3504	FALSE	210	95	5	49	0	FALSE	ACH-000894
NCIH1869_LUNG	RP11-96H19.1--RP11-446N19.1	12	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.1051	0.035	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1869_LUNG	0.89	1	0.1401	FALSE	515	4851	409	746	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-CO3--MT-ATP6	12	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	1	0.75	0.94	0.1051	0.0263	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1869_LUNG	0.75	0.94	0.1314	FALSE	189	492	56	216	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	11	7	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	40	0	0.31	1	0.0964	0.0613	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.31	1	0.1577	FALSE	344	827	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	3	36	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	13	0	0.75	1	0.0263	0.3154	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.75	1	0.3417	FALSE	344	826	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	3	36	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	22	0	0.64	1	0.0263	0.3154	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.64	1	0.3417	FALSE	344	826	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	3	35	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	2	1	0.95	0.97	0.0263	0.3067	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.95	0.97	0.333	FALSE	344	821	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-CO3--MT-ATP6	3	32	MT-CO3	1039	chrM:9245:+	MT-ATP6	5321	chrM:9063:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.8	0.0263	0.2804	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1869_LUNG	0.8	1	0.3067	FALSE	189	492	56	216	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-CO3--MT-ATP6	11	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0964	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1869_LUNG	1	1	0.0964	FALSE	189	492	56	216	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-CO3--MT-ATP6	9	7	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	5	1	0.76	0.94	0.0789	0.0613	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1869_LUNG	0.76	0.94	0.1402	FALSE	189	492	56	216	0	FALSE	ACH-000894
NCIH1869_LUNG	HAUS3--ADD1	10	2	HAUS3	9852	chr4:2230826:-	ADD1	39876	chr4:2927741:+	INCL_NON_REF_SPLICE	YES	3	31	0.8	0.28	0.0876	0.0175	HAUS3->HAUS_augmin_like_complex_subunit_3,chr4:2229191-2243891:-,ADD1->adducin_1,chr4:2845584-2931803:+	NCIH1869_LUNG	0.28	0.8	0.1051	TRUE	0	0	0	1	0	TRUE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	8	7	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	22	0	0.41	1	0.0701	0.0613	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.41	1	0.1314	FALSE	344	826	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	9	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	1	1	0.0789	FALSE	344	821	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-CO3--MT-ATP6	3	23	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	11	1	0.7	0.0263	0.2015	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1869_LUNG	0.7	1	0.2278	FALSE	189	492	56	216	0	FALSE	ACH-000894
NCIH1869_LUNG	CHSY3--HSPA8P4	8	2	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	12	0	0.45	1	0.0701	0.0175	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	NCIH1869_LUNG	0.45	1	0.0876	FALSE	89	26	1	44	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND6--MT-TE	3	21	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.0263	0.184	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1869_LUNG	0.86	1	0.2103	FALSE	499	1288	110	792	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND6--MT-TE	3	21	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.0263	0.184	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1869_LUNG	0.89	1	0.2103	FALSE	499	1288	110	792	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	3	20	MT-ND4	2179	chrM:11938:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9215	0	0	1	0.0263	0.1752	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0	1	0.2015	FALSE	310	769	40	302	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	3	20	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	19	0	0.55	1	0.0263	0.1752	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.55	1	0.2015	FALSE	344	826	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	3	20	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	5581	0	0	1	0.0263	0.1752	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0	1	0.2015	FALSE	344	827	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-TA--MT-TC	7	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0613	0.035	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1869_LUNG	1	1	0.0963	FALSE	462	80	0	856	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-CO3--MT-ATP6	3	18	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	5	1	0.81	0.95	0.0263	0.1577	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1869_LUNG	0.81	0.95	0.184	FALSE	189	492	56	216	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	3	18	MT-ND4	1192	chrM:10951:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	21	0	0.5	1	0.0263	0.1577	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	0.5	1	0.184	FALSE	344	826	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	C15orf57--CBX3	5	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	11	29	0.54	0.31	0.0438	0.0701	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1869_LUNG	0.31	0.54	0.1139	TRUE	267	562	48	632	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-CO3--MT-ATP6	5	7	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	7	1	0.63	0.92	0.0438	0.0613	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1869_LUNG	0.63	0.92	0.1051	FALSE	189	492	56	216	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND1--MT-TL1	3	14	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	16	0	0.52	1	0.0263	0.1227	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH1869_LUNG	0.52	1	0.149	FALSE	210	95	5	49	0	FALSE	ACH-000894
NCIH1869_LUNG	RP11-96H19.1--RP11-446N19.1	5	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0438	0.0438	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1869_LUNG	0.83	1	0.0876	FALSE	467	2173	244	435	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-CO3--MT-ATP6	4	8	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	5	1	0.71	0.92	0.035	0.0701	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1869_LUNG	0.71	0.92	0.1051	FALSE	189	492	56	216	0	FALSE	ACH-000894
NCIH1869_LUNG	SMURF2--LRRC37A3	4	7	SMURF2	12083	chr17:62574610:-	LRRC37A3	45996	chr17:62859136:-	ONLY_REF_SPLICE	YES	112	16	0.09	0.41	0.035	0.0613	{Klijn_CCL:Lung=1},SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	NCIH1869_LUNG	0.09	0.41	0.0963	TRUE	0	1	0	1	1	TRUE	ACH-000894
NCIH1869_LUNG	VAV2--ADD1	5	3	VAV2	21139	chr9:136650898:-	ADD1	64950	chr4:2927741:+	ONLY_REF_SPLICE	YES	3	31	0.73	0.21	0.0438	0.0263	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,ADD1->adducin_1,chr4:2845584-2931803:+	NCIH1869_LUNG	0.21	0.73	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000894
NCIH1869_LUNG	HTT--MYL5	5	2	HTT	6892	chr4:3109150:+	MYL5	81993	chr4:674298:+	ONLY_REF_SPLICE	YES	1	19	0.88	0.27	0.0438	0.0175	HTT->chr4:3076408-3245676:+,huntingtin,MYL5->chr4:667369-675822:+,myosin_light_chain_5	NCIH1869_LUNG	0.27	0.88	0.0613	TRUE	0	0	0	1	0	TRUE	ACH-000894
NCIH1869_LUNG	MT-CO3--MT-ATP6	5	1	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0.0088	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1869_LUNG	1	1	0.0526	FALSE	189	492	56	216	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1869_LUNG	1	1	0.0438	FALSE	499	1288	110	792	0	FALSE	ACH-000894
NCIH1869_LUNG	MARCH6--CTD-2215L10.1	4	3	MARCH6	24258	chr5:10417516:+	CTD-2215L10.1	41921	chr5:9041609:+	ONLY_REF_SPLICE	YES	460	1	0.01	0.88	0.035	0.0263	MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6,CTD-2215L10.1->chr5:9001886-9046052:+	NCIH1869_LUNG	0.01	0.88	0.0613	FALSE	0	0	0	1	0	FALSE	ACH-000894
NCIH1869_LUNG	C15orf57--CBX3	3	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	10	29	0.44	0.22	0.0263	0.0438	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1869_LUNG	0.22	0.44	0.0701	TRUE	267	562	48	632	0	FALSE	ACH-000894
NCIH1869_LUNG	RNF170--RP11-238K6.1	4	1	RNF170	6478	chr8:42725147:-	RP11-238K6.1	20086	chr8:138850128:-	ONLY_REF_SPLICE	YES	47	0	0.1	1	0.035	0.0088	RNF170->chr8:42704780-42752433:-,ring_finger_protein_170,RP11-238K6.1->chr8:138821687-139095813:-	NCIH1869_LUNG	0.1	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000894
NCIH1869_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1869_LUNG	1	1	0.035	FALSE	499	1288	110	792	0	FALSE	ACH-000894
NCIH1869_LUNG	VAV2--POLN	4	0	VAV2	21139	chr9:136650898:-	POLN	42363	chr4:2230970:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.035	0	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,POLN->chr4:2073645-2243848:-,polymerase_(DNA)_nu	NCIH1869_LUNG	1	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000894
NCIH1869_LUNG	MT-TA--MT-TC	3	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0.0088	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1869_LUNG	1	1	0.0351	FALSE	462	80	0	856	0	FALSE	ACH-000894
NCIH1869_LUNG	SMURF2--LRRC37A3	3	1	SMURF2	12083	chr17:62574610:-	LRRC37A3	47115	chr17:62857091:-	ONLY_REF_SPLICE	YES	112	34	0.03	0.11	0.0263	0.0088	{Klijn_CCL:Lung=1},SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,LRRC37A3->chr17:62850430-62915598:-,leucine-rich_repeat_containing_37_member_A3	NCIH1869_LUNG	0.03	0.11	0.0351	TRUE	0	0	0	1	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND1--MT-TL1	3	0	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH1869_LUNG	1	1	0.0263	FALSE	210	95	5	49	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1869_LUNG	1	1	0.0263	FALSE	344	821	44	306	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1869_LUNG	1	1	0.0263	FALSE	499	1288	110	792	0	FALSE	ACH-000894
NCIH1869_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1869_LUNG	1	1	0.0263	FALSE	499	1288	110	792	0	FALSE	ACH-000894
NCIH1869_LUNG	NRP1--PARD3	3	0	NRP1	4012	chr10:33619636:-	PARD3	64705	chr10:34420511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Kidney=[count:1=pct:7.1],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Kidney_-_Cortex=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Lung=1},NRP1->chr10:33466420-33625190:-,neuropilin_1,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	NCIH1869_LUNG	1	1	0.0263	TRUE	0	3	0	3	0	TRUE	ACH-000894
NCIH1869_LUNG	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0088	0.0438	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1869_LUNG	0.75	1	0.0526	FALSE	192	492	57	212	0	FALSE	ACH-000894
NCIH1869_LUNG	RNF146--PHF10	2	0	RNF146	2596	chr6:127601485:+	PHF10	24223	chr6:170105820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	RNF146->chr6:127587755-127609712:+,ring_finger_protein_146,PHF10->PHD_finger_protein_10,chr6:170104001-170124151:-	NCIH1869_LUNG	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000894
NCIH1869_LUNG	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0088	0.035	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1869_LUNG	0.71	1	0.0438	FALSE	407	2205	196	549	0	FALSE	ACH-000894
NCIH1869_LUNG	LHFPL2--PSMB1	1	1	LHFPL2	7033	chr5:77928087:-	PSMB1	26495	chr6:170858201:-	ONLY_REF_SPLICE	YES	3	632	0.4	0	0.0088	0.0088	LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	NCIH1869_LUNG	0	0.4	0.0176	FALSE	0	0	0	2	0	FALSE	ACH-000894
NCIH1869_LUNG	LRRC59--C22orf39	1	1	LRRC59	5125	chr17:48469759:-	C22orf39	19747	chr22:19429217:-	ONLY_REF_SPLICE	YES	288	130	0.01	0.02	0.0088	0.0088	LRRC59->chr17:48452420-48474914:-,leucine_rich_repeat_containing_59,C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39	NCIH1869_LUNG	0.01	0.02	0.0176	FALSE	0	0	0	1	0	FALSE	ACH-000894
NCIH1869_LUNG	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0088	0.0088	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1869_LUNG	0.67	1	0.0176	FALSE	164	806	69	479	0	FALSE	ACH-000894
NCIH1869_LUNG	UBAP1--SRP9	1	1	UBAP1	1236	chr9:34179238:+	SRP9	14925	chr1:225965637:+	ONLY_REF_SPLICE	YES	17	36	0.11	0.05	0.0088	0.0088	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	NCIH1869_LUNG	0.05	0.11	0.0176	TRUE	0	0	0	2	0	FALSE	ACH-000894
NCIH1869_LUNG	ZNF57--MPHOSPH6	1	1	ZNF57	4533	chr19:2915646:+	MPHOSPH6	17692	chr16:82182468:-	ONLY_REF_SPLICE	YES	2	107	0.5	0.02	0.0088	0.0088	ZNF57->chr19:2900896-2918474:+,zinc_finger_protein_57,MPHOSPH6->M-phase_phosphoprotein_6,chr16:82181403-82203831:-	NCIH1869_LUNG	0.02	0.5	0.0176	TRUE	0	0	0	1	0	FALSE	ACH-000894
HMC18_BREAST	RPS6KB1--VMP1	1312	754	RPS6KB1	8493	chr17:58003943:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	679	1397	0.75	0.6	14.3114	8.2247	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.6	0.75	22.5361	TRUE	0	1	0	2	1	TRUE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	278	897	RPS6KB1	16932	chr17:58022879:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	613	1397	0.66	0.46	3.0324	9.7845	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.46	0.66	12.8169	TRUE	0	0	0	2	0	TRUE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	194	271	RPS6KB1	7326	chr17:57992064:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	1016	1397	0.31	0.25	2.1162	2.9561	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.25	0.31	5.0723	TRUE	0	4	1	7	3	TRUE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	2	825	RPS6KB1	15604	chr17:58018304:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	505	1397	0.62	0.37	0.0218	8.9992	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.37	0.62	9.021	TRUE	0	0	0	3	0	TRUE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	3	784	RPS6KB1	8493	chr17:58003943:+	VMP1	28174	chr17:57808782:+	ONLY_REF_SPLICE	YES	679	128	0.54	0.86	0.0327	8.5519	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.54	0.86	8.5846	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	TIMM23B--LINC00843	105	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1453	0.3491	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HMC18_BREAST	1	1	1.4944	TRUE	508	994	45	981	0	FALSE	ACH-000721
HMC18_BREAST	TFB1M--NOX3	87	33	TFB1M	3508	chr6:155632322:-	NOX3	18961	chr6:155764552:-	ONLY_REF_SPLICE	YES	161	51	0.43	0.7	0.949	0.36	LOCAL_REARRANGEMENT:-:[80877],TFB1M->chr6:155578643-155635627:-,transcription_factor_B1,_mitochondrial,NOX3->NADPH_oxidase_3,chr6:155716504-155777037:-	HMC18_BREAST	0.43	0.7	1.309	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	ABL1--FUBP3	77	20	ABL1	1510	chr9:133589842:+	FUBP3	25056	chr9:133485341:+	ONLY_REF_SPLICE	YES	47	107	0.67	0.48	0.8399	0.2182	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:+:[75594],ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,FUBP3->chr9:133454352-133513739:+,far_upstream_element_binding_protein_3	HMC18_BREAST	0.48	0.67	1.0581	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-TA--MT-TN	81	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8836	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMC18_BREAST	1	1	0.8836	FALSE	369	2501	205	193	0	FALSE	ACH-000721
HMC18_BREAST	TFB1M--NOX3	57	55	TFB1M	9513	chr6:155606292:-	NOX3	22419	chr6:155752069:-	ONLY_REF_SPLICE	YES	62	14	0.64	0.89	0.6218	0.5999	LOCAL_REARRANGEMENT:-:[80877],TFB1M->chr6:155578643-155635627:-,transcription_factor_B1,_mitochondrial,NOX3->NADPH_oxidase_3,chr6:155716504-155777037:-	HMC18_BREAST	0.64	0.89	1.2217	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	SREBF1--TOM1L2	64	24	SREBF1	7293	chr17:17720272:-	TOM1L2	19099	chr17:17801988:-	ONLY_REF_SPLICE	YES	297	30	0.23	0.75	0.6981	0.2618	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[6503],SREBF1->chr17:17713713-17740325:-,sterol_regulatory_element_binding_transcription_factor_1,TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein	HMC18_BREAST	0.23	0.75	0.9599	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	63	1	MT-ND4	1151	chrM:10910:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	NO	12123	273	0.01	0.19	0.6872	0.0109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0.01	0.19	0.6981	FALSE	230	193	14	283	0	FALSE	ACH-000721
HMC18_BREAST	ZDHHC20--MYO16	54	25	ZDHHC20	1317	chr13:22033193:-	MYO16	21414	chr13:109318234:+	ONLY_REF_SPLICE	YES	58	0	0.58	1	0.589	0.2727	ZDHHC20->chr13:21950263-22033509:-,zinc_finger_DHHC-type_containing_20,MYO16->chr13:109248500-109860355:+,myosin_XVI	HMC18_BREAST	0.58	1	0.8617	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	KRR1--RP11-114H23.2	48	42	KRR1	8727	chr12:75893593:-	RP11-114H23.2	15747	chr12:76088755:-	INCL_NON_REF_SPLICE	YES	687	0	0.12	1	0.5236	0.4581	KRR1->KRR1,_small_subunit_processome_component_homolog,chr12:75890684-75905416:-,RP11-114H23.2->chr12:76087790-76092596:-	HMC18_BREAST	0.12	1	0.9817	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	50	16	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	11	0	0.86	1	0.5454	0.1745	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0.86	1	0.7199	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	TIMM23--RP11-464F9.1	53	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	272	7	0.17	0.89	0.5781	0.0327	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HMC18_BREAST	0.17	0.89	0.6108	TRUE	519	3926	326	965	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	47	5	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15353	5	0	0.91	0.5127	0.0545	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.91	0.5672	FALSE	230	193	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MON2--USP15	40	25	MON2	1502	chr12:62861098:+	USP15	68244	chr12:62775271:+	ONLY_REF_SPLICE	YES	56	70	0.54	0.48	0.4363	0.2727	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[49386],MON2->MON2_homolog,_regulator_of_endosome-to-Golgi_trafficking,chr12:62860597-62991363:+,USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15	HMC18_BREAST	0.48	0.54	0.709	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	41	3	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	12123	0	0	1	0.4472	0.0327	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.4799	FALSE	230	193	14	283	0	FALSE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	3	139	RPS6KB1	5427	chr17:57990165:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	1403	1397	0.09	0.09	0.0327	1.5162	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.09	0.09	1.5489	TRUE	0	1	0	3	0	FALSE	ACH-000721
HMC18_BREAST	ZNF654--HMGB2	36	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3927	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HMC18_BREAST	1	1	0.3927	TRUE	0	0	0	518	0	FALSE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	26	38	RPS6KB1	1240	chr17:57970686:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	1262	1063	0.05	0.06	0.2836	0.4145	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.05	0.06	0.6981	TRUE	0	9	0	10	6	TRUE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	22	46	RPS6KB1	1240	chr17:57970686:+	VMP1	28174	chr17:57808782:+	ONLY_REF_SPLICE	YES	1262	128	0.05	0.35	0.24	0.5018	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.05	0.35	0.7418	TRUE	0	1	0	3	1	TRUE	ACH-000721
HMC18_BREAST	MT-TA--MT-TC	31	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3382	0.0654	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HMC18_BREAST	1	1	0.4036	FALSE	462	80	0	856	0	FALSE	ACH-000721
HMC18_BREAST	MT-TA--MT-TN	16	61	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1745	0.6654	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMC18_BREAST	1	1	0.8399	FALSE	369	2501	205	193	0	FALSE	ACH-000721
HMC18_BREAST	FAM133B--CDK6	25	10	FAM133B	7228	chr7:92206417:-	CDK6	23335	chr7:92300849:-	ONLY_REF_SPLICE	YES	53	9	0.4	0.8	0.2727	0.1091	{Klijn_CCL:Lymphoid=2,Stomach=1,Lung=1},LOCAL_REARRANGEMENT:-:[14527],FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B,CDK6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:92234235-92465908:-,cyclin-dependent_kinase_6	HMC18_BREAST	0.4	0.8	0.3818	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND3--MT-ATP8	27	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2945	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	1	1	0.2945	FALSE	351	233	23	137	0	FALSE	ACH-000721
HMC18_BREAST	TFB1M--NOX3	3	94	TFB1M	12519	chr6:155578906:-	NOX3	18961	chr6:155764552:-	INCL_NON_REF_SPLICE	YES	2	51	0.98	0.66	0.0327	1.0254	LOCAL_REARRANGEMENT:-:[80877],TFB1M->chr6:155578643-155635627:-,transcription_factor_B1,_mitochondrial,NOX3->NADPH_oxidase_3,chr6:155716504-155777037:-	HMC18_BREAST	0.66	0.98	1.0581	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	CCAT1--CASC8	19	29	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	155	0	0.24	1	0.2073	0.3163	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HMC18_BREAST	0.24	1	0.5236	TRUE	0	7	0	14	6	TRUE	ACH-000721
HMC18_BREAST	NPM1P24--SET	26	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2836	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HMC18_BREAST	1	1	0.2836	TRUE	0	0	0	434	0	FALSE	ACH-000721
HMC18_BREAST	MT-TA--MT-TN	6	79	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0654	0.8617	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMC18_BREAST	1	1	0.9271	FALSE	369	2501	205	193	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	24	4	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15331	6	0	0.82	0.2618	0.0436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.82	0.3054	FALSE	230	198	14	283	0	FALSE	ACH-000721
HMC18_BREAST	TFB1M--NOX3	10	59	TFB1M	9513	chr6:155606292:-	NOX3	21289	chr6:155757681:-	ONLY_REF_SPLICE	YES	62	21	0.53	0.77	0.1091	0.6436	LOCAL_REARRANGEMENT:-:[80877],TFB1M->chr6:155578643-155635627:-,transcription_factor_B1,_mitochondrial,NOX3->NADPH_oxidase_3,chr6:155716504-155777037:-	HMC18_BREAST	0.53	0.77	0.7527	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	22	8	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	11	565	0.73	0.05	0.24	0.0873	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0.05	0.73	0.3273	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	C15orf57--CBX3	17	21	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	69	18	0.36	0.68	0.1854	0.2291	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HMC18_BREAST	0.36	0.68	0.4145	TRUE	267	562	48	632	0	FALSE	ACH-000721
HMC18_BREAST	CCAT1--CASC8	17	21	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	155	7	0.2	0.84	0.1854	0.2291	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HMC18_BREAST	0.2	0.84	0.4145	TRUE	0	26	0	18	24	TRUE	ACH-000721
HMC18_BREAST	MARK2--STIP1	22	1	MARK2	1633	chr11:63607032:+	STIP1	27377	chr11:63960550:+	ONLY_REF_SPLICE	YES	16	40	0.59	0.37	0.24	0.0109	MARK2->chr11:63606400-63678491:+,microtubule_affinity_regulating_kinase_2,STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1	HMC18_BREAST	0.37	0.59	0.2509	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	KRR1--RP11-114H23.2	14	32	KRR1	8727	chr12:75893593:-	RP11-114H23.2	15775	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	687	0	0.06	1	0.1527	0.3491	KRR1->KRR1,_small_subunit_processome_component_homolog,chr12:75890684-75905416:-,RP11-114H23.2->chr12:76087790-76092596:-	HMC18_BREAST	0.06	1	0.5018	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	20	6	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18753	6	0	0.81	0.2182	0.0654	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.81	0.2836	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	9	46	RPS6KB1	1240	chr17:57970686:+	VMP1	25282	chr17:57784888:+	ONLY_REF_SPLICE	YES	1262	0	0.04	1	0.0982	0.5018	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.04	1	0.6	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	17	9	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2793	5	0.01	0.84	0.1854	0.0982	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0.01	0.84	0.2836	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	RPL23AP7--SLC35F5	18	4	RPL23AP7	2382	chr2:114383186:-	SLC35F5	30326	chr2:114463125:-	ONLY_REF_SPLICE	YES	29	8	0.43	0.73	0.1963	0.0436	LOCAL_REARRANGEMENT:-:[77921],RPL23AP7->chr2:114368079-114384667:-,ribosomal_protein_L23a_pseudogene_7,SLC35F5->chr2:114462588-114514400:-,solute_carrier_family_35_member_F5	HMC18_BREAST	0.43	0.73	0.2399	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	17	7	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20487	0	0	1	0.1854	0.0764	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.2618	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	18	3	MT-ND4	1152	chrM:10911:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	12154	2	0	0.91	0.1963	0.0327	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.91	0.229	FALSE	230	193	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MON2--USP15	11	30	MON2	1502	chr12:62861098:+	USP15	67098	chr12:62768171:+	ONLY_REF_SPLICE	YES	56	69	0.42	0.37	0.12	0.3272	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[49386],MON2->MON2_homolog,_regulator_of_endosome-to-Golgi_trafficking,chr12:62860597-62991363:+,USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15	HMC18_BREAST	0.37	0.42	0.4472	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	16	8	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5017	43	0	0.36	0.1745	0.0873	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.36	0.2618	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	13	20	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1418	0.2182	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	1	1	0.36	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	TFB1M--NOX3	10	32	TFB1M	9513	chr6:155606292:-	NOX3	23512	chr6:155750181:-	ONLY_REF_SPLICE	YES	62	19	0.4	0.69	0.1091	0.3491	LOCAL_REARRANGEMENT:-:[80877],TFB1M->chr6:155578643-155635627:-,transcription_factor_B1,_mitochondrial,NOX3->NADPH_oxidase_3,chr6:155716504-155777037:-	HMC18_BREAST	0.4	0.69	0.4582	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-TA--MT-TN	13	19	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1418	0.2073	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMC18_BREAST	1	1	0.3491	FALSE	369	2501	205	193	0	FALSE	ACH-000721
HMC18_BREAST	TMSB10--TMSB4X	17	3	TMSB10	1438	chr2:85133186:+	TMSB4X	6247	chrX:12994426:+	INCL_NON_REF_SPLICE	YES	1581	3424	0.01	0.01	0.1854	0.0327	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HMC18_BREAST	0.01	0.01	0.2181	TRUE	0	1	0	17	1	FALSE	ACH-000721
HMC18_BREAST	C15orf57--CBX3	13	14	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	67	19	0.29	0.59	0.1418	0.1527	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HMC18_BREAST	0.29	0.59	0.2945	TRUE	267	562	48	632	0	FALSE	ACH-000721
HMC18_BREAST	CTA-85E5.10--RP1-130H16.18	14	10	CTA-85E5.10	1353	chr22:30476117:-	RP1-130H16.18	11479	chr22:30691832:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1527	0.1091	CTA-85E5.10->chr22:30404731-30476469:-,RP1-130H16.18->chr22:30681227-30695471:-	HMC18_BREAST	1	1	0.2618	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	16	2	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	5565	1	0	0.95	0.1745	0.0218	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.95	0.1963	FALSE	41	30	6	102	0	FALSE	ACH-000721
HMC18_BREAST	ACSS2--AHCY	13	12	ACSS2	4738	chr20:33464626:+	AHCY	26585	chr20:32883391:-	ONLY_REF_SPLICE	YES	84	542	0.23	0.04	0.1418	0.1309	ACSS2->acyl-CoA_synthetase_short-chain_family_member_2,chr20:33459949-33515769:+,AHCY->adenosylhomocysteinase,chr20:32868074-32899608:-	HMC18_BREAST	0.04	0.23	0.2727	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND6--MT-TE	16	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1745	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMC18_BREAST	1	1	0.1745	FALSE	499	1288	110	792	0	FALSE	ACH-000721
HMC18_BREAST	MACROD1--RP11-783K16.13	15	3	MACROD1	3565	chr11:63918711:-	RP11-783K16.13	14778	chr11:64016070:-	ONLY_REF_SPLICE	YES	114	0	0.14	1	0.1636	0.0327	LOCAL_REARRANGEMENT:-:[80833],MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-,RP11-783K16.13->chr11:64014411-64016966:-	HMC18_BREAST	0.14	1	0.1963	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	14	4	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18126	6	0	0.75	0.1527	0.0436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.75	0.1963	FALSE	231	205	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-TA--MT-TN	15	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1636	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMC18_BREAST	1	1	0.1636	FALSE	369	2501	205	193	0	FALSE	ACH-000721
HMC18_BREAST	SH3KBP1--CXorf23	14	2	SH3KBP1	1295	chrX:19905425:-	CXorf23	34890	chrX:19988416:-	ONLY_REF_SPLICE	YES	51	0	0.24	1	0.1527	0.0218	LOCAL_REARRANGEMENT:-:[25259],SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-,CXorf23->chrX:19930978-19988416:-,chromosome_X_open_reading_frame_23	HMC18_BREAST	0.24	1	0.1745	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	DHX40--VMP1	13	3	DHX40	13568	chr17:57676844:+	VMP1	33457	chr17:57886157:+	ONLY_REF_SPLICE	YES	201	1063	0.07	0.01	0.1418	0.0327	NEIGHBORS[98847],DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.01	0.07	0.1745	FALSE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	10	15	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	23	5	0.52	0.83	0.1091	0.1636	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0.52	0.83	0.2727	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	HSP90AB1--MT-RNR2	13	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3381	0	0	1	0.1418	0.0109	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HMC18_BREAST	0	1	0.1527	FALSE	13	9	0	364	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	12	4	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15462	44	0	0.27	0.1309	0.0436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.27	0.1745	FALSE	230	198	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-TA--MT-TN	5	29	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0545	0.3163	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMC18_BREAST	1	1	0.3708	FALSE	369	2501	205	193	0	FALSE	ACH-000721
HMC18_BREAST	MT-TA--MT-TN	12	1	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1309	0.0109	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMC18_BREAST	1	1	0.1418	FALSE	369	2501	205	193	0	FALSE	ACH-000721
HMC18_BREAST	AC093388.3--MFSD6	11	4	AC093388.3	1267	chr2:191399847:+	MFSD6	14457	chr2:191334484:+	ONLY_REF_SPLICE	YES	1	31	0.94	0.33	0.12	0.0436	LOCAL_REARRANGEMENT:+:[25650],AC093388.3->chr2:191399581-191432828:+,MFSD6->chr2:191273081-191373931:+,major_facilitator_superfamily_domain_containing_6	HMC18_BREAST	0.33	0.94	0.1636	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	11	4	MT-ND4	1756	chrM:11515:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	18225	566	0	0.03	0.12	0.0436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.03	0.1636	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	SLC39A11--CDC42EP4	8	16	SLC39A11	5036	chr17:71080947:-	CDC42EP4	33207	chr17:71282751:-	ONLY_REF_SPLICE	YES	62	11	0.28	0.69	0.0873	0.1745	SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,CDC42EP4->CDC42_effector_protein_4,chr17:71279763-71308314:-	HMC18_BREAST	0.28	0.69	0.2618	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	10	7	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	20416	0	0	1	0.1091	0.0764	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.1855	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	2	39	RPS6KB1	1240	chr17:57970686:+	VMP1	32885	chr17:57842332:+	ONLY_REF_SPLICE	YES	1262	1042	0.03	0.04	0.0218	0.4254	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.03	0.04	0.4472	TRUE	0	2	0	6	2	TRUE	ACH-000721
HMC18_BREAST	HSP90AB1--MT-RNR2	11	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3385	0	0	1	0.12	0.0109	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HMC18_BREAST	0	1	0.1309	FALSE	13	9	0	364	0	FALSE	ACH-000721
HMC18_BREAST	ABL1--FUBP3	6	20	ABL1	1510	chr9:133589842:+	FUBP3	25059	chr9:133485344:+	INCL_NON_REF_SPLICE	YES	47	104	0.36	0.2	0.0654	0.2182	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:+:[75594],ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,FUBP3->chr9:133454352-133513739:+,far_upstream_element_binding_protein_3	HMC18_BREAST	0.2	0.36	0.2836	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	10	4	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15218	6	0	0.7	0.1091	0.0436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.7	0.1527	FALSE	230	193	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MTATP6P1--MTND2P28	11	0	MTATP6P1	1098	chr1:569173:+	MTND2P28	5521	chr1:565859:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.12	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HMC18_BREAST	1	1	0.12	TRUE	20	3	0	12	0	FALSE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	1	39	RPS6KB1	1240	chr17:57970686:+	VMP1	30683	chr17:57814814:+	ONLY_REF_SPLICE	YES	1262	1203	0.03	0.03	0.0109	0.4254	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.03	0.03	0.4363	TRUE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	ARFGEF2--C20orf62	10	1	ARFGEF2	1121	chr20:47538547:+	C20orf62	47086	chr20:43080813:-	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.1091	0.0109	ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,C20orf62->chr20:43080624-43093984:-	HMC18_BREAST	0.79	1	0.12	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	NPM1P24--SET	10	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	NO	30	1816	0.27	0.01	0.1091	0.0109	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HMC18_BREAST	0.01	0.27	0.12	FALSE	0	0	0	434	0	FALSE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	2	33	RPS6KB1	1240	chr17:57970686:+	VMP1	36266	chr17:57889031:+	ONLY_REF_SPLICE	YES	1262	902	0.03	0.04	0.0218	0.36	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.03	0.04	0.3818	TRUE	0	6	0	2	3	TRUE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	8	8	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	20910	0	0	1	0.0873	0.0873	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.1746	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	7	11	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18360	0	0	1	0.0764	0.12	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.1964	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	ABL1--FUBP3	6	14	ABL1	1510	chr9:133589842:+	FUBP3	26090	chr9:133487843:+	ONLY_REF_SPLICE	YES	47	86	0.3	0.19	0.0654	0.1527	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:+:[75594],ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,FUBP3->chr9:133454352-133513739:+,far_upstream_element_binding_protein_3	HMC18_BREAST	0.19	0.3	0.2181	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	DENND5A--SBF2	8	6	DENND5A	1430	chr11:9286508:-	SBF2	75479	chr11:9838571:-	ONLY_REF_SPLICE	YES	82	56	0.15	0.2	0.0873	0.0654	HGNC_GENEFAM,DENND5A->DENN_domain_containing_5A,chr11:9160372-9286937:-,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	HMC18_BREAST	0.15	0.2	0.1527	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	6	14	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	17328	0	0	1	0.0654	0.1527	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.2181	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	5	18	MT-ND4	2332	chrM:12091:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0545	0.1963	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0.92	1	0.2508	FALSE	209	205	15	279	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	8	4	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15353	6	0	0.67	0.0873	0.0436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.67	0.1309	FALSE	230	193	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	4	20	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0.2182	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	1	1	0.2618	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	CCAT1--CASC8	3	23	CCAT1	1274	chr8:128231060:-	CASC8	14106	chr8:128335399:-	INCL_NON_REF_SPLICE	YES	127	0	0.17	1	0.0327	0.2509	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HMC18_BREAST	0.17	1	0.2836	TRUE	0	7	0	14	6	TRUE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	6	11	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	18710	0	0	1	0.0654	0.12	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.1854	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	7	6	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	18303	884	0	0.01	0.0764	0.0654	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.01	0.1418	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	6	10	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2722	44	0.01	0.27	0.0654	0.1091	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0.01	0.27	0.1745	FALSE	216	209	16	281	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	4	18	MT-ND5	2749	chrM:14085:+	MT-ATP8	5896	chrM:8449:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0.1963	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	1	1	0.2399	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	STT3B--TRIM71	8	2	STT3B	6612	chr3:31641951:+	TRIM71	27138	chr3:32927426:+	ONLY_REF_SPLICE	YES	93	0	0.1	1	0.0873	0.0218	STT3B->STT3B,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr3:31574130-31679112:+,TRIM71->chr3:32859510-32939318:+,tripartite_motif_containing_71,_E3_ubiquitin_protein_ligase	HMC18_BREAST	0.1	1	0.1091	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	4	17	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	46	0	0.31	1	0.0436	0.1854	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0.31	1	0.229	FALSE	213	207	15	279	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	6	9	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	3197	0	0	1	0.0654	0.0982	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.1636	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	3	21	MT-ND5	2835	chrM:14171:+	MT-ATP8	5865	chrM:8418:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.2291	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	1	1	0.2618	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	MT-TA--MT-TN	8	1	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0873	0.0109	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMC18_BREAST	1	1	0.0982	FALSE	369	2501	205	193	0	FALSE	ACH-000721
HMC18_BREAST	CCAT1--CASC8	4	16	CCAT1	1274	chr8:128231060:-	CASC8	15246	chr8:128302305:-	INCL_NON_REF_SPLICE	YES	127	7	0.14	0.74	0.0436	0.1745	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HMC18_BREAST	0.14	0.74	0.2181	TRUE	0	26	0	18	24	TRUE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	5	12	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	18673	0	0	1	0.0545	0.1309	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.1854	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	4	16	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	16203	0	0	1	0.0436	0.1745	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.2181	FALSE	231	215	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	6	8	MT-ND4	1528	chrM:11287:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	NO	22767	0	0	1	0.0654	0.0873	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.1527	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	NDFIP2--NALCN	7	4	NDFIP2	3717	chr13:80095110:+	NALCN	27831	chr13:101910925:-	ONLY_REF_SPLICE	YES	213	0	0.05	1	0.0764	0.0436	NDFIP2->Nedd4_family_interacting_protein_2,chr13:80055287-80130210:+,NALCN->chr13:101706130-102068843:-,sodium_leak_channel,_non-selective	HMC18_BREAST	0.05	1	0.12	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	RP11-123O10.4--GRIP1	8	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0873	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HMC18_BREAST	1	1	0.0873	FALSE	416	2512	207	587	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	3	19	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.2073	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	1	1	0.24	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	5	11	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	2246	0	0.01	1	0.0545	0.12	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0.01	1	0.1745	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	2	23	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	1262	1265	0.02	0.02	0.0218	0.2509	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.02	0.02	0.2727	TRUE	0	9	0	11	6	TRUE	ACH-000721
HMC18_BREAST	TFB1M--NOX3	6	7	TFB1M	9513	chr6:155606292:-	NOX3	25929	chr6:155732494:-	ONLY_REF_SPLICE	YES	62	14	0.17	0.48	0.0654	0.0764	LOCAL_REARRANGEMENT:-:[80877],TFB1M->chr6:155578643-155635627:-,transcription_factor_B1,_mitochondrial,NOX3->NADPH_oxidase_3,chr6:155716504-155777037:-	HMC18_BREAST	0.17	0.48	0.1418	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	TMSB10--TMSB4X	7	3	TMSB10	1785	chr2:85133533:+	TMSB4X	6738	chrX:12994917:+	INCL_NON_REF_SPLICE	YES	4227	8151	0	0	0.0764	0.0327	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HMC18_BREAST	0	0	0.1091	TRUE	0	1	0	17	1	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	4	14	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	18551	0	0	1	0.0436	0.1527	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.1963	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	3	18	MT-ND5	2764	chrM:14100:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.84	0.0327	0.1963	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0.84	1	0.229	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	RP11-114H23.1--RP11-114H23.2	7	2	RP11-114H23.1	7093	chr12:76024947:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0764	0.0218	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HMC18_BREAST	1	1	0.0982	FALSE	0	0	0	3	0	FALSE	ACH-000721
HMC18_BREAST	RPS6KB1--VMP1	1	26	RPS6KB1	1240	chr17:57970686:+	VMP1	37383	chr17:57895073:+	ONLY_REF_SPLICE	YES	1262	817	0.02	0.03	0.0109	0.2836	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0.02	0.03	0.2945	TRUE	0	0	0	3	0	FALSE	ACH-000721
HMC18_BREAST	CEP192--IMPA2	7	1	CEP192	36086	chr18:13095680:+	IMPA2	60281	chr18:12028042:+	ONLY_REF_SPLICE	YES	48	60	0.14	0.12	0.0764	0.0109	CEP192->centrosomal_protein_192,chr18:12991361-13125051:+,IMPA2->chr18:11981024-12030876:+,inositol_monophosphatase_2	HMC18_BREAST	0.12	0.14	0.0873	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	KRR1--RP11-114H23.2	3	17	KRR1	7588	chr12:75895503:-	RP11-114H23.2	15747	chr12:76088755:-	ONLY_REF_SPLICE	YES	893	0	0.02	1	0.0327	0.1854	KRR1->KRR1,_small_subunit_processome_component_homolog,chr12:75890684-75905416:-,RP11-114H23.2->chr12:76087790-76092596:-	HMC18_BREAST	0.02	1	0.2181	TRUE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	4	13	MT-ND4	1821	chrM:11580:+	MT-ATP8	5444	chrM:8431:+	INCL_NON_REF_SPLICE	YES	18117	0	0	1	0.0436	0.1418	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.1854	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	6	5	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	21282	5	0	0.69	0.0654	0.0545	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.69	0.1199	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	6	5	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	19671	0	0	1	0.0654	0.0545	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.1199	FALSE	231	205	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	17	MT-ND4	2231	chrM:11990:+	MT-ATP8	5416	chrM:8403:+	INCL_NON_REF_SPLICE	NO	4199	0	0	1	0.0327	0.1854	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.2181	FALSE	216	209	16	281	0	FALSE	ACH-000721
HMC18_BREAST	MT-TA--MT-TC	6	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0654	0.0545	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HMC18_BREAST	1	1	0.1199	FALSE	462	80	0	856	0	FALSE	ACH-000721
HMC18_BREAST	RP11-443N24.2--RP11-443N24.3	7	1	RP11-443N24.2	2217	chr12:25954629:-	RP11-443N24.3	6829	chr12:25987060:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0764	0.0109	LOCAL_REARRANGEMENT:-:[17245],RP11-443N24.2->chr12:25935640-25967105:-,RP11-443N24.3->chr12:25984350-25987116:-	HMC18_BREAST	1	1	0.0873	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0764	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HMC18_BREAST	1	1	0.0764	TRUE	1	39	0	134	39	FALSE	ACH-000721
HMC18_BREAST	MT-ND3--MT-ATP8	7	0	MT-ND3	1060	chrM:10118:+	MT-ATP8	4489	chrM:8508:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0764	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	1	1	0.0764	FALSE	351	233	23	137	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	6	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	18753	947	0	0.01	0.0654	0.0436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.01	0.109	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	16	MT-ND4	2231	chrM:11990:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	4199	0	0	1	0.0327	0.1745	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.2072	FALSE	216	209	16	281	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	6	4	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	18683	1638	0	0.01	0.0654	0.0436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.01	0.109	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	4	12	MT-ND5	2394	chrM:13730:+	MT-ATP8	5872	chrM:8425:+	INCL_NON_REF_SPLICE	YES	2093	0	0.01	1	0.0436	0.1309	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0.01	1	0.1745	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	6	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	18091	1846	0	0	0.0654	0.0327	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0	0.0981	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	XRN1--ATR	5	7	XRN1	21441	chr3:142116171:-	ATR	94557	chr3:142178225:-	ONLY_REF_SPLICE	YES	24	63	0.33	0.16	0.0545	0.0764	LOCAL_REARRANGEMENT:-:[1173],XRN1->5'-3'_exoribonuclease_1,chr3:142025449-142166904:-,ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-	HMC18_BREAST	0.16	0.33	0.1309	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	ABL1--FUBP3	3	14	ABL1	1510	chr9:133589842:+	FUBP3	26590	chr9:133488343:+	ONLY_REF_SPLICE	YES	47	122	0.27	0.12	0.0327	0.1527	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:+:[75594],ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,FUBP3->chr9:133454352-133513739:+,far_upstream_element_binding_protein_3	HMC18_BREAST	0.12	0.27	0.1854	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	4	10	MT-ND4	2283	chrM:12042:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	45	44	0.24	0.24	0.0436	0.1091	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0.24	0.24	0.1527	FALSE	213	207	15	279	0	FALSE	ACH-000721
HMC18_BREAST	SPCS3--WDR17	6	2	SPCS3	1256	chr4:177241370:+	WDR17	17551	chr4:177032726:+	ONLY_REF_SPLICE	YES	282	5	0.03	0.62	0.0654	0.0218	SPCS3->chr4:177241115-177253396:+,signal_peptidase_complex_subunit_3,WDR17->WD_repeat_domain_17,chr4:176986985-177103978:+	HMC18_BREAST	0.03	0.62	0.0872	TRUE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	RP11-133F8.2--CTC-529L17.2	6	1	RP11-133F8.2	5568	chr5:91843055:-	CTC-529L17.2	11897	chr5:92012257:-	ONLY_REF_SPLICE	YES	1	2	0.88	0.78	0.0654	0.0109	LOCAL_REARRANGEMENT:-:[15093],RP11-133F8.2->chr5:91745963-91996570:-,CTC-529L17.2->chr5:92011663-92023961:-	HMC18_BREAST	0.78	0.88	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	EIF1--RPS28	6	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0654	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HMC18_BREAST	1	1	0.0654	TRUE	0	0	0	81	0	FALSE	ACH-000721
HMC18_BREAST	LIF--MT-CO1	6	0	LIF	3257	chr22:30639841:-	MT-CO1	10305	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0654	0	LIF->chr22:30636436-30642840:-,leukemia_inhibitory_factor,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HMC18_BREAST	1	1	0.0654	FALSE	0	0	0	8	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	4	8	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18091	44	0	0.21	0.0436	0.0873	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.21	0.1309	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND6--MT-TE	6	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0654	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMC18_BREAST	1	1	0.0654	FALSE	499	1288	110	792	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	5	3	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	8680	0	0	1	0.0545	0.0327	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.0872	FALSE	230	193	14	283	0	FALSE	ACH-000721
HMC18_BREAST	SLC39A11--CDC42EP4	1	19	SLC39A11	6205	chr17:71069806:-	CDC42EP4	33207	chr17:71282751:-	ONLY_REF_SPLICE	YES	62	11	0.24	0.65	0.0109	0.2073	SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,CDC42EP4->CDC42_effector_protein_4,chr17:71279763-71308314:-	HMC18_BREAST	0.24	0.65	0.2182	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	TMSB10--TMSB4X	5	3	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	4546	7638	0	0	0.0545	0.0327	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HMC18_BREAST	0	0	0.0872	FALSE	0	1	0	17	1	FALSE	ACH-000721
HMC18_BREAST	BRE--SLC4A1AP	5	2	BRE	10577	chr2:28352247:+	SLC4A1AP	37661	chr2:27916552:+	ONLY_REF_SPLICE	YES	252	414	0.03	0.02	0.0545	0.0218	BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+,SLC4A1AP->chr2:27886338-27917840:+,solute_carrier_family_4_member_1_adaptor_protein	HMC18_BREAST	0.02	0.03	0.0763	TRUE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	4	6	MT-ND4	1756	chrM:11515:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18225	6	0	0.62	0.0436	0.0654	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.62	0.109	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	10	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1	6	0.93	0.68	0.0327	0.1091	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0.68	0.93	0.1418	FALSE	209	205	15	279	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	10	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	18614	0	0	1	0.0327	0.1091	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.1418	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	4	6	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	19685	0	0	1	0.0436	0.0654	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.109	FALSE	231	205	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	10	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	18334	0	0	1	0.0327	0.1091	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.1418	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-TA--MT-TC	4	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0.0654	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HMC18_BREAST	1	1	0.109	FALSE	462	80	0	856	0	FALSE	ACH-000721
HMC18_BREAST	MTATP6P1--MTND2P28	5	2	MTATP6P1	1123	chr1:569198:+	MTND2P28	4879	chr1:565217:+	INCL_NON_REF_SPLICE	YES	1896	4385	0	0	0.0545	0.0218	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HMC18_BREAST	0	0	0.0763	FALSE	20	3	0	12	0	FALSE	ACH-000721
HMC18_BREAST	RP11-680G10.1--GSE1	5	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	63	1	0.1	0.0545	0.0218	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HMC18_BREAST	0.1	1	0.0763	TRUE	465	1949	224	605	0	FALSE	ACH-000721
HMC18_BREAST	RPSAP52--HMGA2	5	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	1	218	0.88	0.03	0.0545	0.0218	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HMC18_BREAST	0.03	0.88	0.0763	FALSE	0	59	0	125	0	FALSE	ACH-000721
HMC18_BREAST	TUBD1--VMP1	5	2	TUBD1	4653	chr17:57963444:-	VMP1	33780	chr17:57917129:+	ONLY_REF_SPLICE	YES	327	1397	0.02	0	0.0545	0.0218	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:-:+:[17235],TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0	0.02	0.0763	FALSE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND3--MT-ATP8	5	1	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	86	6	0.07	0.5	0.0545	0.0109	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0.07	0.5	0.0654	FALSE	351	233	23	137	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND6--MT-TE	5	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0545	0.0109	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMC18_BREAST	0.75	1	0.0654	FALSE	499	1288	110	792	0	FALSE	ACH-000721
HMC18_BREAST	MT-TA--MT-TC	4	5	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0.0545	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HMC18_BREAST	1	1	0.0981	FALSE	462	80	0	856	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	4	4	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	22070	827	0	0.01	0.0436	0.0436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.01	0.0872	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	4	4	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19671	44	0	0.15	0.0436	0.0436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.15	0.0872	FALSE	231	205	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0545	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMC18_BREAST	1	1	0.0545	FALSE	499	1288	110	792	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	7	MT-ND4	1469	chrM:11228:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	20578	0	0	1	0.0327	0.0764	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.1091	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	3	7	MT-ND5	2047	chrM:13383:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	4226	0	0	1	0.0327	0.0764	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.1091	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	3	7	MT-ND5	2662	chrM:13998:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	1342	565	0.01	0.02	0.0327	0.0764	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0.01	0.02	0.1091	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	6	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19646	0	0	1	0.0327	0.0654	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.0981	FALSE	231	205	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	6	MT-ND4	1359	chrM:11118:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	20773	0	0	1	0.0327	0.0654	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.0981	FALSE	231	216	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	6	MT-ND4	1783	chrM:11542:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	18777	44	0	0.17	0.0327	0.0654	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.17	0.0981	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	6	MT-ND4	1538	chrM:11297:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22528	6	0	0.6	0.0327	0.0654	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.6	0.0981	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	3	6	MT-ND5	1570	chrM:12906:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3617	5	0	0.64	0.0327	0.0654	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.64	0.0981	FALSE	42	36	7	104	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	4	2	MT-ND5	1807	chrM:13143:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	2912	752	0	0.01	0.0436	0.0218	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.01	0.0654	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	3	6	MT-ND5	1969	chrM:13305:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4155	5	0	0.64	0.0327	0.0654	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.64	0.0981	FALSE	43	37	8	105	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND6--MT-TE	4	2	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0.0218	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMC18_BREAST	1	1	0.0654	FALSE	499	1288	110	792	0	FALSE	ACH-000721
HMC18_BREAST	ARFGEF2--RP5-1013A22.2	4	1	ARFGEF2	1121	chr20:47538547:+	RP5-1013A22.2	44388	chr20:43078730:-	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0436	0.0109	ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,RP5-1013A22.2->chr20:43077417-43078732:-	HMC18_BREAST	0.62	1	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	5	MT-ND4	1510	chrM:11269:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	21160	6	0	0.57	0.0327	0.0545	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.57	0.0872	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	5	MT-ND4	1244	chrM:11003:+	MT-ATP8	5476	chrM:8463:+	INCL_NON_REF_SPLICE	NO	15878	2	0	0.8	0.0327	0.0545	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.8	0.0872	FALSE	231	204	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	5	MT-ND4	1285	chrM:11044:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	18291	0	0	1	0.0327	0.0545	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.0872	FALSE	231	205	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	5	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	15353	0	0	1	0.0327	0.0545	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.0872	FALSE	230	193	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	5	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	16029	0	0	1	0.0327	0.0545	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.0872	FALSE	231	204	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	5	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	20773	0	0	1	0.0327	0.0545	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.0872	FALSE	231	216	16	283	0	FALSE	ACH-000721
HMC18_BREAST	RP11-114H23.1--RP11-114H23.2	4	1	RP11-114H23.1	3580	chr12:76085885:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0436	0.0109	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HMC18_BREAST	0.71	1	0.0545	FALSE	0	0	0	4	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND3--MT-ATP8	4	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	1	1	0.0436	FALSE	351	233	23	137	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	4	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	NO	18650	1018	0	0.01	0.0327	0.0436	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.01	0.0763	FALSE	231	217	16	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HMC18_BREAST	1	1	0.0436	FALSE	462	80	0	856	0	FALSE	ACH-000721
HMC18_BREAST	MT-TW--MT-ND2	4	0	MT-TW	1005	chrM:5516:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HMC18_BREAST	1	1	0.0436	FALSE	14	0	0	19	0	FALSE	ACH-000721
HMC18_BREAST	RP11-255B23.4--CASC8	4	0	RP11-255B23.4	1060	chr8:128215408:-	CASC8	14642	chr8:128302305:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HMC18_BREAST	1	1	0.0436	TRUE	0	9	0	3	9	TRUE	ACH-000721
HMC18_BREAST	SGSM3--TBC1D22A	4	0	SGSM3	1098	chr22:40766692:+	TBC1D22A	24953	chr22:47287162:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	SGSM3->chr22:40766595-40806293:+,small_G_protein_signaling_modulator_3,TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+	HMC18_BREAST	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	UBALD2--MT-CO3	4	0	UBALD2	1748	chr17:74262030:+	MT-CO3	7075	chrM:9412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	UBALD2->UBA_like_domain_containing_2,chr17:74261283-74267375:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HMC18_BREAST	1	1	0.0436	FALSE	0	0	0	2	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	3	MT-ND4	1112	chrM:10871:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	9264	0	0	1	0.0327	0.0327	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	1	0.0654	FALSE	230	193	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND6--MT-TE	3	3	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0327	0.0327	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMC18_BREAST	0.75	1	0.0654	FALSE	499	1288	110	792	0	FALSE	ACH-000721
HMC18_BREAST	MTATP6P1--MTND2P28	3	3	MTATP6P1	1146	chr1:569221:+	MTND2P28	4952	chr1:565290:+	INCL_NON_REF_SPLICE	YES	2788	2672	0	0	0.0327	0.0327	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HMC18_BREAST	0	0	0.0654	FALSE	20	3	0	12	0	FALSE	ACH-000721
HMC18_BREAST	RORA--ANXA2	3	3	RORA	13827	chr15:60884586:-	ANXA2	53106	chr15:60678285:-	ONLY_REF_SPLICE	YES	2	475	0.75	0.01	0.0327	0.0327	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	HMC18_BREAST	0.01	0.75	0.0654	FALSE	4	3	0	6	0	FALSE	ACH-000721
HMC18_BREAST	RP11-120D5.1--MID1	3	3	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	5	0	0.55	1	0.0327	0.0327	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HMC18_BREAST	0.55	1	0.0654	FALSE	0	9	0	55	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1244	chrM:11003:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	15878	827	0	0.01	0.0327	0.0218	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.01	0.0545	FALSE	231	204	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	20405	1638	0	0	0.0327	0.0218	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0	0.0545	FALSE	231	205	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND5--MT-ATP8	3	2	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5751	43	0	0.1	0.0327	0.0218	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	0	0.1	0.0545	FALSE	41	30	6	102	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND6--MT-TE	3	2	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.0218	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HMC18_BREAST	1	1	0.0545	FALSE	499	1288	110	792	0	FALSE	ACH-000721
HMC18_BREAST	NPM1P24--SET	3	1	NPM1P24	1533	chr10:74677760:-	SET	12307	chr9:131456202:+	INCL_NON_REF_SPLICE	NO	30	1642	0.12	0	0.0327	0.0109	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HMC18_BREAST	0	0.12	0.0436	FALSE	0	0	0	434	0	FALSE	ACH-000721
HMC18_BREAST	NPM1P24--SET	3	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	30	1776	0.12	0	0.0327	0.0109	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HMC18_BREAST	0	0.12	0.0436	FALSE	0	0	0	434	0	FALSE	ACH-000721
HMC18_BREAST	RP11-30J20.1--EFR3A	3	1	RP11-30J20.1	2293	chr8:137549302:+	EFR3A	21585	chr8:132952746:+	ONLY_REF_SPLICE	YES	3	84	0.57	0.05	0.0327	0.0109	RP11-30J20.1->chr8:137543041-137997178:+,EFR3A->EFR3_homolog_A,chr8:132916335-133025889:+	HMC18_BREAST	0.05	0.57	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0327	0.0109	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HMC18_BREAST	0.8	1	0.0436	FALSE	515	4851	409	746	0	FALSE	ACH-000721
HMC18_BREAST	SLC7A5--MT-ND4L	3	1	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1316	0	0	1	0.0327	0.0109	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HMC18_BREAST	0	1	0.0436	FALSE	0	0	0	23	0	FALSE	ACH-000721
HMC18_BREAST	TUBD1--VMP1	3	1	TUBD1	3113	chr17:57968192:-	VMP1	33780	chr17:57917129:+	ONLY_REF_SPLICE	YES	325	1397	0.01	0	0.0327	0.0109	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:-:+:[17235],TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0	0.01	0.0436	FALSE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	AC093388.3--MFSD6	2	4	AC093388.3	2133	chr2:191400713:+	MFSD6	14457	chr2:191334484:+	ONLY_REF_SPLICE	YES	0	31	1	0.16	0.0218	0.0436	LOCAL_REARRANGEMENT:+:[25650],AC093388.3->chr2:191399581-191432828:+,MFSD6->chr2:191273081-191373931:+,major_facilitator_superfamily_domain_containing_6	HMC18_BREAST	0.16	1	0.0654	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	EIF1--RPS28	3	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HMC18_BREAST	1	1	0.0327	TRUE	0	0	0	81	0	FALSE	ACH-000721
HMC18_BREAST	ERRFI1--ENO1	3	0	ERRFI1	1151	chr1:8086218:-	ENO1	12316	chr1:8934976:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	HMC18_BREAST	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	GNGT1--AC002076.10	3	0	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	HMC18_BREAST	1	1	0.0327	FALSE	0	28	0	37	0	FALSE	ACH-000721
HMC18_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5571	chrM:8558:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HMC18_BREAST	1	1	0.0327	FALSE	231	204	14	283	0	FALSE	ACH-000721
HMC18_BREAST	MT-TA--MT-TN	3	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMC18_BREAST	1	1	0.0327	FALSE	369	2501	205	193	0	FALSE	ACH-000721
HMC18_BREAST	MT-TA--MT-TN	3	0	MT-TA	1059	chrM:5597:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HMC18_BREAST	1	1	0.0327	FALSE	369	2501	205	193	0	FALSE	ACH-000721
HMC18_BREAST	RP11-255B23.4--CASC8	3	0	RP11-255B23.4	1060	chr8:128215408:-	CASC8	13502	chr8:128335399:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HMC18_BREAST	1	1	0.0327	TRUE	0	0	0	3	0	TRUE	ACH-000721
HMC18_BREAST	WDR59--MT-CO2	3	0	WDR59	26368	chr16:74937980:-	MT-CO2	39446	chrM:7642:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HMC18_BREAST	1	1	0.0327	FALSE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	NEBL--RP11-275N1.1	2	2	NEBL	2518	chr10:21461312:-	RP11-275N1.1	53930	chr10:21629242:-	ONLY_REF_SPLICE	YES	19	7	0.17	0.36	0.0218	0.0218	NEBL->chr10:21068902-21463116:-,nebulette,RP11-275N1.1->chr10:21629162-21661879:-	HMC18_BREAST	0.17	0.36	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	NEBL--RP11-275N1.1	2	2	NEBL	2518	chr10:21461312:-	RP11-275N1.1	50628	chr10:21659044:-	ONLY_REF_SPLICE	YES	19	13	0.17	0.24	0.0218	0.0218	NEBL->chr10:21068902-21463116:-,nebulette,RP11-275N1.1->chr10:21629162-21661879:-	HMC18_BREAST	0.17	0.24	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	CPSF6--SRSF1	2	1	CPSF6	11046	chr12:69656342:+	SRSF1	22199	chr17:56082402:-	ONLY_REF_SPLICE	YES	225	879	0.01	0	0.0218	0.0109	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	HMC18_BREAST	0	0.01	0.0327	FALSE	2	7	0	12	0	FALSE	ACH-000721
HMC18_BREAST	KRR1--RP11-114H23.2	2	1	KRR1	1124	chr12:75905293:-	RP11-114H23.2	15747	chr12:76088755:-	ONLY_REF_SPLICE	YES	174	0	0.02	1	0.0218	0.0109	KRR1->KRR1,_small_subunit_processome_component_homolog,chr12:75890684-75905416:-,RP11-114H23.2->chr12:76087790-76092596:-	HMC18_BREAST	0.02	1	0.0327	TRUE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	KRR1--RP11-114H23.2	1	5	KRR1	6310	chr12:75897684:-	RP11-114H23.2	15747	chr12:76088755:-	ONLY_REF_SPLICE	NO	865	0	0.01	1	0.0109	0.0545	KRR1->KRR1,_small_subunit_processome_component_homolog,chr12:75890684-75905416:-,RP11-114H23.2->chr12:76087790-76092596:-	HMC18_BREAST	0.01	1	0.0654	FALSE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	BRI3BP--UBC	2	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	HMC18_BREAST	1	1	0.0218	TRUE	5	99	5	34	0	FALSE	ACH-000721
HMC18_BREAST	GGT7--ITCH	2	0	GGT7	1214	chr20:33460450:-	ITCH	18075	chr20:32957200:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GGT7->chr20:33432523-33460663:-,gamma-glutamyltransferase_7,ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase	HMC18_BREAST	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	HIBADH--FUS	2	0	HIBADH	6024	chr7:27668990:-	FUS	21369	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	HIBADH->3-hydroxyisobutyrate_dehydrogenase,chr7:27565061-27702614:-,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	HMC18_BREAST	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	IMMP2L--AC003088.1	2	0	IMMP2L	4976	chr7:111127294:-	AC003088.1	22075	chr7:110072963:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	HMC18_BREAST	1	1	0.0218	TRUE	0	2	0	1	2	TRUE	ACH-000721
HMC18_BREAST	IMMP2L--AC003088.1	2	0	IMMP2L	4976	chr7:111127294:-	AC003088.1	19914	chr7:110165618:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	HMC18_BREAST	1	1	0.0218	TRUE	0	2	0	2	2	TRUE	ACH-000721
HMC18_BREAST	RORA--ANXA2	2	0	RORA	13406	chr15:60885007:-	ANXA2	59082	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	HMC18_BREAST	1	1	0.0218	FALSE	2	1	0	8	0	FALSE	ACH-000721
HMC18_BREAST	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HMC18_BREAST	1	1	0.0218	FALSE	93	270	15	244	0	FALSE	ACH-000721
HMC18_BREAST	RP11-326C3.7--TAGLN2	2	0	RP11-326C3.7	1107	chr11:311035:-	TAGLN2	8301	chr1:159890327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	RP11-326C3.7->chr11:310139-311141:-,TAGLN2->chr1:159887897-159895522:-,transgelin_2	HMC18_BREAST	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	SLC38A1--RP11-474P2.4	2	0	SLC38A1	2492	chr12:46662309:-	RP11-474P2.4	30874	chr12:46778451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1,RP11-474P2.4->chr12:46778016-46780774:-	HMC18_BREAST	1	1	0.0218	TRUE	0	1	0	1	1	TRUE	ACH-000721
HMC18_BREAST	SLCO4A1--BEST2	2	0	SLCO4A1	1109	chr20:61273905:+	BEST2	20711	chr19:12865366:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,BEST2->bestrophin_2,chr19:12862516-12869272:+	HMC18_BREAST	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	RP11-120D5.1--MID1	1	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0109	0.0327	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HMC18_BREAST	0.44	1	0.0436	FALSE	16	356	14	466	0	FALSE	ACH-000721
HMC18_BREAST	TIMM23B--LINC00843	1	3	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0109	0.0327	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HMC18_BREAST	1	1	0.0436	TRUE	62	24	1	171	0	FALSE	ACH-000721
HMC18_BREAST	KRR1--RP11-114H23.2	1	2	KRR1	3432	chr12:75900562:-	RP11-114H23.2	15747	chr12:76088755:-	ONLY_REF_SPLICE	YES	964	0	0	1	0.0109	0.0218	KRR1->KRR1,_small_subunit_processome_component_homolog,chr12:75890684-75905416:-,RP11-114H23.2->chr12:76087790-76092596:-	HMC18_BREAST	0	1	0.0327	FALSE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	KRR1--RP11-114H23.2	1	2	KRR1	2297	chr12:75902054:-	RP11-114H23.2	15747	chr12:76088755:-	ONLY_REF_SPLICE	YES	890	0	0	1	0.0109	0.0218	KRR1->KRR1,_small_subunit_processome_component_homolog,chr12:75890684-75905416:-,RP11-114H23.2->chr12:76087790-76092596:-	HMC18_BREAST	0	1	0.0327	FALSE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	NEBL--RP11-275N1.1	1	2	NEBL	2518	chr10:21461312:-	RP11-275N1.1	52836	chr10:21643693:-	ONLY_REF_SPLICE	YES	19	7	0.14	0.3	0.0109	0.0218	NEBL->chr10:21068902-21463116:-,nebulette,RP11-275N1.1->chr10:21629162-21661879:-	HMC18_BREAST	0.14	0.3	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0109	0.0218	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HMC18_BREAST	0.75	1	0.0327	FALSE	407	2205	196	549	0	FALSE	ACH-000721
HMC18_BREAST	SLC45A1--PER3	1	2	SLC45A1	9953	chr1:8399758:+	PER3	16642	chr1:7846781:+	ONLY_REF_SPLICE	YES	149	33	0.02	0.08	0.0109	0.0218	SLC45A1->chr1:8377886-8404227:+,solute_carrier_family_45_member_1,PER3->chr1:7844380-7905237:+,period_circadian_clock_3	HMC18_BREAST	0.02	0.08	0.0327	TRUE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	SPCS3--WDR17	1	2	SPCS3	1256	chr4:177241370:+	WDR17	17184	chr4:177032359:+	ONLY_REF_SPLICE	YES	282	5	0.01	0.38	0.0109	0.0218	SPCS3->chr4:177241115-177253396:+,signal_peptidase_complex_subunit_3,WDR17->WD_repeat_domain_17,chr4:176986985-177103978:+	HMC18_BREAST	0.01	0.38	0.0327	FALSE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	SPCS3--WDR17	1	2	SPCS3	1256	chr4:177241370:+	WDR17	16061	chr4:177017614:+	ONLY_REF_SPLICE	YES	282	3	0.01	0.5	0.0109	0.0218	SPCS3->chr4:177241115-177253396:+,signal_peptidase_complex_subunit_3,WDR17->WD_repeat_domain_17,chr4:176986985-177103978:+	HMC18_BREAST	0.01	0.5	0.0327	FALSE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	TUBD1--VMP1	1	2	TUBD1	9829	chr17:57951900:-	VMP1	33780	chr17:57917129:+	ONLY_REF_SPLICE	YES	298	1397	0.01	0	0.0109	0.0218	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:-:+:[17235],TUBD1->chr17:57936851-57970304:-,tubulin_delta_1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HMC18_BREAST	0	0.01	0.0327	FALSE	0	0	0	2	0	FALSE	ACH-000721
HMC18_BREAST	CMSS1--TBC1D23	1	1	CMSS1	1210	chr3:99536887:+	TBC1D23	26407	chr3:99998493:+	ONLY_REF_SPLICE	YES	363	1	0.01	0.67	0.0109	0.0109	NEIGHBORS[82397],CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast),TBC1D23->TBC1_domain_family_member_23,chr3:99979844-100044095:+	HMC18_BREAST	0.01	0.67	0.0218	FALSE	0	2	0	2	0	FALSE	ACH-000721
HMC18_BREAST	CPSF6--RBBP6	1	1	CPSF6	11046	chr12:69656342:+	RBBP6	22191	chr16:24551933:+	ONLY_REF_SPLICE	YES	225	45	0.01	0.04	0.0109	0.0109	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,RBBP6->Oncogene{Bushman},chr16:24549014-24584184:+,retinoblastoma_binding_protein_6	HMC18_BREAST	0.01	0.04	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	KIAA1551--LINC00943	1	1	KIAA1551	2502	chr12:32113805:+	LINC00943	20610	chr12:127227286:+	ONLY_REF_SPLICE	YES	38	0	0.05	1	0.0109	0.0109	KIAA1551->KIAA1551,chr12:32112304-32146039:+,LINC00943->chr12:127210816-127230798:+,long_intergenic_non-protein_coding_RNA_943	HMC18_BREAST	0.05	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	KRR1--RP11-114H23.1	1	1	KRR1	6310	chr12:75897684:-	RP11-114H23.1	17142	chr12:76085959:-	ONLY_REF_SPLICE	YES	865	5	0	0.29	0.0109	0.0109	LOCAL_REARRANGEMENT:-:[51566],KRR1->KRR1,_small_subunit_processome_component_homolog,chr12:75890684-75905416:-,RP11-114H23.1->chr12:75956982-76377795:-	HMC18_BREAST	0	0.29	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	RNF126--NAB1	1	1	RNF126	1231	chr19:663047:-	NAB1	14037	chr2:191514572:+	ONLY_REF_SPLICE	YES	76	56	0.03	0.03	0.0109	0.0109	RNF126->chr19:647526-663277:-,ring_finger_protein_126,NAB1->NGFI-A_binding_protein_1,chr2:191511472-191557492:+	HMC18_BREAST	0.03	0.03	0.0218	TRUE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	RORA--ANXA2	1	1	RORA	21906	chr15:60806815:-	ANXA2	59082	chr15:60656722:-	ONLY_REF_SPLICE	YES	5	4985	0.29	0	0.0109	0.0109	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	HMC18_BREAST	0	0.29	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	RORA--ANXA2	1	1	RORA	13406	chr15:60885007:-	ANXA2	53106	chr15:60678285:-	ONLY_REF_SPLICE	YES	0	475	1	0	0.0109	0.0109	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	HMC18_BREAST	0	1	0.0218	FALSE	4	3	0	6	0	FALSE	ACH-000721
HMC18_BREAST	RP11-385J1.2--C3orf20	1	1	RP11-385J1.2	7023	chr3:178466192:-	C3orf20	25996	chr3:14763160:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0109	0.0109	RP11-385J1.2->chr3:178244293-178578193:-,C3orf20->chr3:14716606-14814541:+,chromosome_3_open_reading_frame_20	HMC18_BREAST	0.5	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	SEMA3C--AC004862.6	1	1	SEMA3C	25642	chr7:80387647:-	AC004862.6	43886	chr7:79968243:-	ONLY_REF_SPLICE	YES	230	0	0.01	1	0.0109	0.0109	SEMA3C->chr7:80371854-80551675:-,semaphorin_3C,AC004862.6->chr7:79959508-80014295:-	HMC18_BREAST	0.01	1	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	SH3KBP1--CXorf23	1	1	SH3KBP1	1295	chrX:19905425:-	CXorf23	35965	chrX:19984767:-	ONLY_REF_SPLICE	YES	51	0	0.04	1	0.0109	0.0109	LOCAL_REARRANGEMENT:-:[25259],SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-,CXorf23->chrX:19930978-19988416:-,chromosome_X_open_reading_frame_23	HMC18_BREAST	0.04	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000721
HMC18_BREAST	TFB1M--NOX3	1	1	TFB1M	3508	chr6:155632322:-	NOX3	22419	chr6:155752069:-	ONLY_REF_SPLICE	YES	161	14	0.01	0.12	0.0109	0.0109	LOCAL_REARRANGEMENT:-:[80877],TFB1M->chr6:155578643-155635627:-,transcription_factor_B1,_mitochondrial,NOX3->NADPH_oxidase_3,chr6:155716504-155777037:-	HMC18_BREAST	0.01	0.12	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000721
HMC18_BREAST	TNFRSF19--LINC00327	1	1	TNFRSF19	9175	chr13:24200931:+	LINC00327	24841	chr13:24060374:+	ONLY_REF_SPLICE	NO	319	16	0.01	0.11	0.0109	0.0109	LOCAL_REARRANGEMENT:+:[82906],TNFRSF19->chr13:24144509-24250232:+,tumor_necrosis_factor_receptor_superfamily_member_19,LINC00327->chr13:24040710-24061603:+,long_intergenic_non-protein_coding_RNA_327	HMC18_BREAST	0.01	0.11	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000721
EWS502_BONE	TICRR--EWSR1	402	199	TICRR	15508	chr15:90152180:+	EWSR1	46061	chr22:29688126:+	ONLY_REF_SPLICE	YES	50	340	0.92	0.64	4.3485	2.1526	TICRR->TOPBP1_interacting_checkpoint_and_replication_regulator,chr15:90118713-90174287:+,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	EWS502_BONE	0.64	0.92	6.5011	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	EWSR1--FLI1	210	175	EWSR1	11554	chr22:29683123:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	686	16	0.36	0.96	2.2716	1.893	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	EWS502_BONE	0.36	0.96	4.1646	TRUE	0	0	0	6	0	TRUE	ACH-000279
EWS502_BONE	PHF21A--ELF1	101	92	PHF21A	9462	chr11:46100685:-	ELF1	39366	chr13:41533152:-	ONLY_REF_SPLICE	YES	59	32	0.77	0.86	1.0925	0.9952	PHF21A->PHD_finger_protein_21A,chr11:45950871-46142985:-,ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-	EWS502_BONE	0.77	0.86	2.0877	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	KANSL1--ARL17B	92	65	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	61	76	0.72	0.67	0.9952	0.7031	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	EWS502_BONE	0.67	0.72	1.6983	TRUE	181	1564	124	196	0	FALSE	ACH-000279
EWS502_BONE	PDZD8--TRIP12	80	34	PDZD8	2112	chr10:119133867:-	TRIP12	21946	chr2:230724290:-	ONLY_REF_SPLICE	YES	14	79	0.89	0.59	0.8654	0.3678	PDZD8->PDZ_domain_containing_8,chr10:119040000-119134978:-,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	EWS502_BONE	0.59	0.89	1.2332	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	TIMM23B--LINC00843	77	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8329	0.2596	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EWS502_BONE	0.99	1	1.0925	TRUE	508	994	45	981	0	FALSE	ACH-000279
EWS502_BONE	TRIP12--SHOC2	65	44	TRIP12	5100	chr2:230744698:-	SHOC2	54295	chr10:112723883:+	ONLY_REF_SPLICE	YES	71	5	0.61	0.96	0.7031	0.476	TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12,SHOC2->SHOC2_leucine-rich_repeat_scaffold_protein,chr10:112679301-112773425:+	EWS502_BONE	0.61	0.96	1.1791	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	EWSR1--FLI1	23	182	EWSR1	12735	chr22:29684775:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	211	16	0.49	0.93	0.2488	1.9687	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	EWS502_BONE	0.49	0.93	2.2175	TRUE	0	0	0	2	0	TRUE	ACH-000279
EWS502_BONE	SMAP1--AKIRIN2	58	34	SMAP1	1366	chr6:71377844:+	AKIRIN2	23470	chr6:88391481:-	ONLY_REF_SPLICE	YES	45	219	0.67	0.3	0.6274	0.3678	SMAP1->Oncogene{Bushman},chr6:71377479-71571718:+,small_ArfGAP_1,AKIRIN2->akirin_2,chr6:88384790-88411927:-	EWS502_BONE	0.3	0.67	0.9952	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	TICRR--EWSR1	10	201	TICRR	15508	chr15:90152180:+	EWSR1	45486	chr22:29687551:+	ONLY_REF_SPLICE	YES	50	333	0.81	0.39	0.1082	2.1743	TICRR->TOPBP1_interacting_checkpoint_and_replication_regulator,chr15:90118713-90174287:+,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	EWS502_BONE	0.39	0.81	2.2825	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	TICRR--EWSR1	3	201	TICRR	15508	chr15:90152180:+	EWSR1	45489	chr22:29687554:+	ONLY_REF_SPLICE	YES	50	328	0.8	0.38	0.0325	2.1743	TICRR->TOPBP1_interacting_checkpoint_and_replication_regulator,chr15:90118713-90174287:+,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	EWS502_BONE	0.38	0.8	2.2068	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	EWSR1--FLI1	4	175	EWSR1	11554	chr22:29683123:+	FLI1	36176	chr11:128673783:+	INCL_NON_REF_SPLICE	YES	686	1	0.21	0.99	0.0433	1.893	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	EWS502_BONE	0.21	0.99	1.9363	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	ZNF654--HMGB2	47	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5084	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	EWS502_BONE	1	1	0.5084	TRUE	0	0	0	518	0	FALSE	ACH-000279
EWS502_BONE	EWSR1--FLI1	1	180	EWSR1	12704	chr22:29684744:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	197	16	0.48	0.92	0.0108	1.9471	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	EWS502_BONE	0.48	0.92	1.9579	TRUE	0	0	0	2	0	TRUE	ACH-000279
EWS502_BONE	TIMM23--RP11-464F9.1	39	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	353	1	0.1	0.98	0.4219	0.0108	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EWS502_BONE	0.1	0.98	0.4327	TRUE	519	3926	326	965	0	FALSE	ACH-000279
EWS502_BONE	RP11-680G10.1--GSE1	33	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	18	1	0.69	0.357	0.0757	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	EWS502_BONE	0.69	1	0.4327	TRUE	458	1351	185	561	0	FALSE	ACH-000279
EWS502_BONE	PDZD8--TRIP12	21	39	PDZD8	2112	chr10:119133867:-	TRIP12	20989	chr2:230725247:-	ONLY_REF_SPLICE	YES	14	78	0.81	0.43	0.2272	0.4219	PDZD8->PDZ_domain_containing_8,chr10:119040000-119134978:-,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	EWS502_BONE	0.43	0.81	0.6491	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	CNOT8--ANXA6	20	29	CNOT8	2216	chr5:154238328:+	ANXA6	33470	chr5:150506041:-	ONLY_REF_SPLICE	YES	211	403	0.19	0.11	0.2163	0.3137	CNOT8->CCR4-NOT_transcription_complex_subunit_8,chr5:154237113-154256353:+,ANXA6->annexin_A6,chr5:150480273-150537443:-	EWS502_BONE	0.11	0.19	0.53	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	EWSR1--FLI1	1	102	EWSR1	12735	chr22:29684775:+	FLI1	39468	chr11:128677075:+	ONLY_REF_SPLICE	NO	211	20	0.33	0.84	0.0108	1.1034	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	EWS502_BONE	0.33	0.84	1.1142	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	EWSR1--FLI1	2	97	EWSR1	11554	chr22:29683123:+	FLI1	39468	chr11:128677075:+	ONLY_REF_SPLICE	YES	686	20	0.13	0.83	0.0216	1.0493	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	EWS502_BONE	0.13	0.83	1.0709	TRUE	0	0	0	4	0	TRUE	ACH-000279
EWS502_BONE	MT-TA--MT-TC	25	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2704	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EWS502_BONE	1	1	0.2704	FALSE	462	80	0	856	0	FALSE	ACH-000279
EWS502_BONE	MT-ND4--MT-RNR2	21	13	MT-ND4	1947	chrM:11706:+	MT-RNR2	5392	chrM:1684:+	INCL_NON_REF_SPLICE	NO	14355	0	0	1	0.2272	0.1406	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EWS502_BONE	0	1	0.3678	FALSE	13	19	3	21	0	FALSE	ACH-000279
EWS502_BONE	PLXDC1--TAF13	24	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2596	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	EWS502_BONE	1	1	0.2596	TRUE	7	10	0	216	0	FALSE	ACH-000279
EWS502_BONE	AP000783.1--CCDC15	18	8	AP000783.1	1817	chr11:123301874:+	CCDC15	20367	chr11:124908327:+	ONLY_REF_SPLICE	YES	0	9	1	0.74	0.1947	0.0865	AP000783.1->chr11:123301058-123306427:+,CCDC15->chr11:124824017-124911385:+,coiled-coil_domain_containing_15	EWS502_BONE	0.74	1	0.2812	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	HNRNPF--PTPN20A	17	0	HNRNPF	1036	chr10:43904579:-	PTPN20A	28624	chr10:46552531:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1839	0	HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F,PTPN20A->chr10:46549955-46641045:-	EWS502_BONE	1	1	0.1839	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	MT-ND4--MT-ATP8	17	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1839	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EWS502_BONE	1	1	0.1839	FALSE	230	193	14	283	0	FALSE	ACH-000279
EWS502_BONE	EWSR1--FLI1	1	59	EWSR1	11554	chr22:29683123:+	FLI1	40528	chr11:128679052:+	ONLY_REF_SPLICE	YES	686	90	0.08	0.4	0.0108	0.6382	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	EWS502_BONE	0.08	0.4	0.649	TRUE	0	0	0	5	0	TRUE	ACH-000279
EWS502_BONE	MT-ATP6--MT-CO1	15	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1623	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EWS502_BONE	1	1	0.1623	FALSE	183	104	9	328	0	FALSE	ACH-000279
EWS502_BONE	C15orf57--CBX3	11	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	100	29	0.17	0.42	0.119	0.1082	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EWS502_BONE	0.17	0.42	0.2272	TRUE	267	562	48	632	0	FALSE	ACH-000279
EWS502_BONE	PHF21A--ELF1	1	48	PHF21A	7818	chr11:46105717:-	ELF1	39366	chr13:41533152:-	ONLY_REF_SPLICE	YES	42	32	0.54	0.6	0.0108	0.5192	PHF21A->PHD_finger_protein_21A,chr11:45950871-46142985:-,ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-	EWS502_BONE	0.54	0.6	0.53	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	TRIP12--SHOC2	1	45	TRIP12	5100	chr2:230744698:-	SHOC2	53110	chr10:112711366:+	ONLY_REF_SPLICE	YES	71	2	0.39	0.96	0.0108	0.4868	TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12,SHOC2->SHOC2_leucine-rich_repeat_scaffold_protein,chr10:112679301-112773425:+	EWS502_BONE	0.39	0.96	0.4976	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	ST3GAL3--GUCY1B2	10	6	ST3GAL3	5679	chr1:44257820:+	GUCY1B2	27054	chr13:51640293:-	ONLY_REF_SPLICE	YES	49	0	0.25	1	0.1082	0.0649	ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,GUCY1B2->chr13:51568647-51654998:-,guanylate_cyclase_1,_soluble,_beta_2_(pseudogene)	EWS502_BONE	0.25	1	0.1731	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	MT-ND6--MT-TE	10	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1082	0.0541	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EWS502_BONE	1	1	0.1623	FALSE	499	1288	110	792	0	FALSE	ACH-000279
EWS502_BONE	TYW3--ATP13A5	9	8	TYW3	4564	chr1:75204472:+	ATP13A5	24289	chr3:193062864:-	ONLY_REF_SPLICE	YES	166	0	0.09	1	0.0974	0.0865	TYW3->chr1:75198836-75232362:+,tRNA-yW_synthesizing_protein_3_homolog,ATP13A5->ATPase_13A5,chr3:192992579-193096632:-	EWS502_BONE	0.09	1	0.1839	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	CNOT8--ANXA6	2	34	CNOT8	2249	chr5:154238361:+	ANXA6	33470	chr5:150506041:-	ONLY_REF_SPLICE	YES	276	403	0.12	0.08	0.0216	0.3678	CNOT8->CCR4-NOT_transcription_complex_subunit_8,chr5:154237113-154256353:+,ANXA6->annexin_A6,chr5:150480273-150537443:-	EWS502_BONE	0.08	0.12	0.3894	TRUE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	RP11-680G10.1--GSE1	10	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	59	1	0.17	0.1082	0.0216	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	EWS502_BONE	0.17	1	0.1298	TRUE	465	1949	224	605	0	FALSE	ACH-000279
EWS502_BONE	MT-ND4--MT-ATP8	9	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0974	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EWS502_BONE	1	1	0.0974	FALSE	230	198	14	283	0	FALSE	ACH-000279
EWS502_BONE	MT-ND4--MT-ATP8	9	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0974	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EWS502_BONE	1	1	0.0974	FALSE	231	205	14	283	0	FALSE	ACH-000279
EWS502_BONE	RP11-123O10.4--GRIP1	7	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0757	0.0865	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	EWS502_BONE	1	1	0.1622	FALSE	416	2512	207	587	0	FALSE	ACH-000279
EWS502_BONE	MT-ND4--MT-ATP8	7	7	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13995	67	0	0.17	0.0757	0.0757	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EWS502_BONE	0	0.17	0.1514	FALSE	231	217	16	283	0	FALSE	ACH-000279
EWS502_BONE	ST3GAL3--GUCY1B2	8	3	ST3GAL3	5679	chr1:44257820:+	GUCY1B2	28261	chr13:51637030:-	ONLY_REF_SPLICE	YES	49	2	0.18	0.85	0.0865	0.0325	ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,GUCY1B2->chr13:51568647-51654998:-,guanylate_cyclase_1,_soluble,_beta_2_(pseudogene)	EWS502_BONE	0.18	0.85	0.119	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	MKL2--LINC00237	8	1	MKL2	20796	chr16:14312855:+	LINC00237	43552	chr20:21074493:-	ONLY_REF_SPLICE	YES	17	0	0.35	1	0.0865	0.0108	MKL2->MKL1/myocardin_like_2,chr16:14165178-14360630:+,LINC00237->chr20:21068245-21086999:-,long_intergenic_non-protein_coding_RNA_237	EWS502_BONE	0.35	1	0.0973	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	CAPZB--SORCS2	8	0	CAPZB	1137	chr1:19811930:-	SORCS2	25158	chr4:7655861:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0865	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,SORCS2->chr4:7194265-7744554:+,sortilin_related_VPS10_domain_containing_receptor_2	EWS502_BONE	1	1	0.0865	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	MT-CO1--MT-ND1	7	4	MT-CO1	1577	chrM:6480:+	MT-ND1	5559	chrM:3323:+	INCL_NON_REF_SPLICE	YES	21771	0	0	1	0.0757	0.0433	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	EWS502_BONE	0	1	0.119	FALSE	39	30	6	19	0	FALSE	ACH-000279
EWS502_BONE	ARHGEF12--CDC42BPG	7	2	ARHGEF12	1198	chr11:120207984:+	CDC42BPG	58977	chr11:64608120:-	ONLY_REF_SPLICE	YES	42	5	0.18	0.64	0.0757	0.0216	ARHGEF12->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_12,chr11:120207787-120360645:+,CDC42BPG->CDC42_binding_protein_kinase_gamma,chr11:64590859-64612041:-	EWS502_BONE	0.18	0.64	0.0973	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	MT-ND4--MT-ATP8	5	10	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	13343	0	0	1	0.0541	0.1082	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EWS502_BONE	0	1	0.1623	FALSE	231	217	16	283	0	FALSE	ACH-000279
EWS502_BONE	MT-ND6--MT-TE	6	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0.0541	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EWS502_BONE	1	1	0.119	FALSE	499	1288	110	792	0	FALSE	ACH-000279
EWS502_BONE	PPP6R2--TMEM62	6	4	PPP6R2	7083	chr22:50845304:+	TMEM62	41045	chr15:43461791:+	ONLY_REF_SPLICE	YES	97	1	0.09	0.91	0.0649	0.0433	PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2,TMEM62->chr15:43415477-43477344:+,transmembrane_protein_62	EWS502_BONE	0.09	0.91	0.1082	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	MT-ND6--MT-TE	5	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0541	0.0649	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EWS502_BONE	0.92	1	0.119	FALSE	499	1288	110	792	0	FALSE	ACH-000279
EWS502_BONE	FTH1--ACTB	6	1	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	4576	10	0	0.41	0.0649	0.0108	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	EWS502_BONE	0	0.41	0.0757	FALSE	1	0	0	97	0	FALSE	ACH-000279
EWS502_BONE	MT-CO1--MT-ND1	5	5	MT-CO1	1653	chrM:6556:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	25186	5696	0	0	0.0541	0.0541	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	EWS502_BONE	0	0	0.1082	FALSE	39	30	6	19	0	FALSE	ACH-000279
EWS502_BONE	MTAP--LINGO2	6	1	MTAP	8659	chr9:21838009:+	LINGO2	26369	chr9:28295364:-	ONLY_REF_SPLICE	YES	122	7	0.05	0.5	0.0649	0.0108	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,LINGO2->chr9:27948076-28670283:-,leucine_rich_repeat_and_Ig_domain_containing_2	EWS502_BONE	0.05	0.5	0.0757	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	RP11-120D5.1--MID1	6	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	26	0.88	0.21	0.0649	0.0108	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	EWS502_BONE	0.21	0.88	0.0757	FALSE	16	356	14	466	0	FALSE	ACH-000279
EWS502_BONE	HNRNPF--PTPN20A	6	0	HNRNPF	1077	chr10:43904538:-	PTPN20A	28624	chr10:46552531:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0649	0	HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F,PTPN20A->chr10:46549955-46641045:-	EWS502_BONE	1	1	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	KANSL1--ARL17B	2	16	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	63	76	0.22	0.19	0.0216	0.1731	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	EWS502_BONE	0.19	0.22	0.1947	TRUE	105	90	7	93	0	FALSE	ACH-000279
EWS502_BONE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EWS502_BONE	1	1	0.0649	FALSE	183	104	9	328	0	FALSE	ACH-000279
EWS502_BONE	TYW3--ATP13A5	4	8	TYW3	4564	chr1:75204472:+	ATP13A5	25309	chr3:193061844:-	ONLY_REF_SPLICE	YES	166	0	0.07	1	0.0433	0.0865	TYW3->chr1:75198836-75232362:+,tRNA-yW_synthesizing_protein_3_homolog,ATP13A5->ATPase_13A5,chr3:192992579-193096632:-	EWS502_BONE	0.07	1	0.1298	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	C15orf57--CBX3	4	7	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	98	29	0.1	0.28	0.0433	0.0757	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EWS502_BONE	0.1	0.28	0.119	TRUE	267	562	48	632	0	FALSE	ACH-000279
EWS502_BONE	C15orf57--CBX3	4	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	98	30	0.1	0.27	0.0433	0.0757	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EWS502_BONE	0.1	0.27	0.119	TRUE	267	562	48	632	0	FALSE	ACH-000279
EWS502_BONE	RP11-96H19.1--RP11-446N19.1	5	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0541	0.0325	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EWS502_BONE	1	1	0.0866	FALSE	515	4851	409	746	0	FALSE	ACH-000279
EWS502_BONE	MT-ND4--MT-ATP8	3	10	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2185	67	0.01	0.16	0.0325	0.1082	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EWS502_BONE	0.01	0.16	0.1407	FALSE	216	209	16	281	0	FALSE	ACH-000279
EWS502_BONE	MT-ND4--MT-ATP8	3	10	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	13311	0	0	1	0.0325	0.1082	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EWS502_BONE	0	1	0.1407	FALSE	231	217	16	283	0	FALSE	ACH-000279
EWS502_BONE	MT-ND4--MT-RNR2	3	10	MT-ND4	1843	chrM:11602:+	MT-RNR2	5624	chrM:1916:+	INCL_NON_REF_SPLICE	YES	14349	8516	0	0	0.0325	0.1082	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EWS502_BONE	0	0	0.1407	FALSE	13	19	3	21	0	FALSE	ACH-000279
EWS502_BONE	OTUD5--MT-ND4L	5	1	OTUD5	9682	chrX:48780079:-	MT-ND4L	13458	chrM:10471:+	INCL_NON_REF_SPLICE	YES	154	0	0.04	1	0.0541	0.0108	OTUD5->OTU_deubiquitinase_5,chrX:48779305-48815648:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EWS502_BONE	0.04	1	0.0649	FALSE	0	0	0	6	0	FALSE	ACH-000279
EWS502_BONE	SIPA1L1--RP11-486O13.2	4	5	SIPA1L1	1733	chr14:71787898:+	RP11-486O13.2	52794	chr14:70690468:+	INCL_NON_REF_SPLICE	YES	7	0	0.56	1	0.0433	0.0541	SIPA1L1->chr14:71787166-72207946:+,signal_induced_proliferation_associated_1_like_1,RP11-486O13.2->chr14:70653840-70696904:+	EWS502_BONE	0.56	1	0.0974	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	FTH1--ACTB	5	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0541	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	EWS502_BONE	1	1	0.0541	TRUE	1	0	0	97	0	FALSE	ACH-000279
EWS502_BONE	MT-ND4--MT-RNR2	3	8	MT-ND4	1824	chrM:11583:+	MT-RNR2	5924	chrM:2216:+	INCL_NON_REF_SPLICE	YES	14037	9269	0	0	0.0325	0.0865	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EWS502_BONE	0	0	0.119	FALSE	13	19	3	21	0	FALSE	ACH-000279
EWS502_BONE	NRG1-IT1--NRG1-IT2	5	0	NRG1-IT1	1146	chr8:31883880:+	NRG1-IT2	15465	chr8:32144617:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0541	0	NEIGHBORS[31907],NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+,NRG1-IT2->chr8:32028898-32145082:+	EWS502_BONE	1	1	0.0541	FALSE	0	0	0	3	0	FALSE	ACH-000279
EWS502_BONE	MT-ND4--MT-ATP8	4	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	13995	1903	0	0	0.0433	0.0325	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EWS502_BONE	0	0	0.0758	FALSE	231	217	16	283	0	FALSE	ACH-000279
EWS502_BONE	MT-ND4--MT-RNR2	4	2	MT-ND4	1209	chrM:10968:+	MT-RNR2	5415	chrM:1707:+	INCL_NON_REF_SPLICE	NO	11899	0	0	1	0.0433	0.0216	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EWS502_BONE	0	1	0.0649	FALSE	13	19	3	21	0	FALSE	ACH-000279
EWS502_BONE	MT-ND6--MT-TE	3	6	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0325	0.0649	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EWS502_BONE	0.9	1	0.0974	FALSE	499	1288	110	792	0	FALSE	ACH-000279
EWS502_BONE	BTRC--ZMIZ1	4	1	BTRC	1166	chr10:103113985:+	ZMIZ1	33736	chr10:81036938:+	ONLY_REF_SPLICE	YES	17	4	0.23	0.56	0.0433	0.0108	BTRC->Oncogene{Bushman},beta-transducin_repeat_containing_E3_ubiquitin_protein_ligase,chr10:103113820-103317078:+,ZMIZ1->Oncogene{Bushman},chr10:80828792-81076276:+,zinc_finger_MIZ-type_containing_1	EWS502_BONE	0.23	0.56	0.0541	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	CPPED1--ITFG3	4	1	CPPED1	2530	chr16:12875042:-	ITFG3	17851	chr16:309482:+	ONLY_REF_SPLICE	YES	57	124	0.08	0.04	0.0433	0.0108	CPPED1->calcineurin_like_phosphoesterase_domain_containing_1,chr16:12756919-12897874:-,ITFG3->chr16:284545-319942:+,chr16:299546-319942:+	EWS502_BONE	0.04	0.08	0.0541	TRUE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	DAB1--SRD5A3-AS1	4	1	DAB1	14147	chr1:57756636:-	SRD5A3-AS1	47006	chr4:56241200:-	ONLY_REF_SPLICE	YES	29	2	0.15	0.71	0.0433	0.0108	DAB1->DAB1,_reelin_adaptor_protein,chr1:57460451-59012406:-,SRD5A3-AS1->SRD5A3_antisense_RNA_1,chr4:56230138-56262014:-	EWS502_BONE	0.15	0.71	0.0541	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	HNRNPF--PTPN20A	4	1	HNRNPF	2450	chr10:43903165:-	PTPN20A	28624	chr10:46552531:-	ONLY_REF_SPLICE	YES	41	3	0.11	0.62	0.0433	0.0108	HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F,PTPN20A->chr10:46549955-46641045:-	EWS502_BONE	0.11	0.62	0.0541	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	MT-CO2--MT-CO1	4	1	MT-CO2	1278	chrM:7863:+	MT-CO1	5001	chrM:6220:+	INCL_NON_REF_SPLICE	YES	3	20506	0.62	0	0.0433	0.0108	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EWS502_BONE	0	0.62	0.0541	FALSE	36	10	0	27	0	FALSE	ACH-000279
EWS502_BONE	MT-ND4--MT-ATP8	3	5	MT-ND4	1779	chrM:11538:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14825	67	0	0.11	0.0325	0.0541	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EWS502_BONE	0	0.11	0.0866	FALSE	231	217	16	283	0	FALSE	ACH-000279
EWS502_BONE	CNOT8--ANXA6	1	12	CNOT8	2216	chr5:154238328:+	ANXA6	35631	chr5:150502572:-	ONLY_REF_SPLICE	YES	211	481	0.06	0.03	0.0108	0.1298	CNOT8->CCR4-NOT_transcription_complex_subunit_8,chr5:154237113-154256353:+,ANXA6->annexin_A6,chr5:150480273-150537443:-	EWS502_BONE	0.03	0.06	0.1406	TRUE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	MT-ND4--MT-ATP8	4	0	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EWS502_BONE	1	1	0.0433	FALSE	231	217	16	283	0	FALSE	ACH-000279
EWS502_BONE	MT-TA--MT-TC	4	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EWS502_BONE	1	1	0.0433	FALSE	462	80	0	856	0	FALSE	ACH-000279
EWS502_BONE	NRG1-IT1--NRG1-IT2	3	4	NRG1-IT1	2253	chr8:31887001:+	NRG1-IT2	15465	chr8:32144617:+	ONLY_REF_SPLICE	YES	133	0	0.05	1	0.0325	0.0433	NEIGHBORS[31907],NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+,NRG1-IT2->chr8:32028898-32145082:+	EWS502_BONE	0.05	1	0.0758	FALSE	3	1	0	5	0	FALSE	ACH-000279
EWS502_BONE	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0325	0.0433	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EWS502_BONE	0.88	1	0.0758	FALSE	467	2173	244	435	0	FALSE	ACH-000279
EWS502_BONE	MT-ND4--MT-RNR2	3	3	MT-ND4	1501	chrM:11260:+	MT-RNR2	5918	chrM:2210:+	INCL_NON_REF_SPLICE	YES	17448	8993	0	0	0.0325	0.0325	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EWS502_BONE	0	0	0.065	FALSE	13	19	3	21	0	FALSE	ACH-000279
EWS502_BONE	MT-ND1--MT-RNR2	3	2	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	36	8998	0.12	0	0.0325	0.0216	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EWS502_BONE	0	0.12	0.0541	FALSE	120	26	5	87	0	FALSE	ACH-000279
EWS502_BONE	MT-CO2--MT-CO1	3	1	MT-CO2	1359	chrM:7944:+	MT-CO1	5335	chrM:6554:+	INCL_NON_REF_SPLICE	YES	3	25181	0.57	0	0.0325	0.0108	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EWS502_BONE	0	0.57	0.0433	FALSE	36	10	0	27	0	FALSE	ACH-000279
EWS502_BONE	MT-ND4--MT-RNR2	3	1	MT-ND4	1212	chrM:10971:+	MT-RNR2	5959	chrM:2251:+	INCL_NON_REF_SPLICE	YES	11916	8754	0	0	0.0325	0.0108	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EWS502_BONE	0	0	0.0433	FALSE	13	19	3	21	0	FALSE	ACH-000279
EWS502_BONE	MT-ND4--MT-RNR2	3	1	MT-ND4	1303	chrM:11062:+	MT-RNR2	5933	chrM:2225:+	INCL_NON_REF_SPLICE	YES	16452	9214	0	0	0.0325	0.0108	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EWS502_BONE	0	0	0.0433	FALSE	13	19	3	21	0	FALSE	ACH-000279
EWS502_BONE	TBL1XR1--RP11-2L8.1	3	1	TBL1XR1	1353	chr3:176914909:-	RP11-2L8.1	33601	chr3:177652978:+	ONLY_REF_SPLICE	NO	13	0	0.24	1	0.0325	0.0108	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-2L8.1->chr3:177652611-177655450:+	EWS502_BONE	0.24	1	0.0433	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	TYW3--ATP13A5	2	5	TYW3	3465	chr1:75202306:+	ATP13A5	24289	chr3:193062864:-	ONLY_REF_SPLICE	YES	205	0	0.03	1	0.0216	0.0541	TYW3->chr1:75198836-75232362:+,tRNA-yW_synthesizing_protein_3_homolog,ATP13A5->ATPase_13A5,chr3:192992579-193096632:-	EWS502_BONE	0.03	1	0.0757	TRUE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	AL136376.1--RPS28	3	0	AL136376.1	2362	chr1:116915870:-	RPS28	5709	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	EWS502_BONE	1	1	0.0325	TRUE	0	0	0	12	0	TRUE	ACH-000279
EWS502_BONE	AL136376.1--RPS28	3	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	EWS502_BONE	1	1	0.0325	TRUE	0	0	0	12	0	TRUE	ACH-000279
EWS502_BONE	HUWE1--MT-ND4L	3	0	HUWE1	69943	chrX:53565915:-	MT-ND4L	79803	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EWS502_BONE	1	1	0.0325	FALSE	0	0	0	4	0	FALSE	ACH-000279
EWS502_BONE	HUWE1--MT-ND4L	3	0	HUWE1	47347	chrX:53595792:-	MT-ND4L	79803	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EWS502_BONE	1	1	0.0325	FALSE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	MT-ND4--MT-ATP8	3	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EWS502_BONE	1	1	0.0325	FALSE	230	198	14	283	0	FALSE	ACH-000279
EWS502_BONE	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EWS502_BONE	1	1	0.0325	FALSE	499	1288	110	792	0	FALSE	ACH-000279
EWS502_BONE	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1068	chr6:30691587:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	EWS502_BONE	1	1	0.0325	TRUE	0	1	0	48	1	FALSE	ACH-000279
EWS502_BONE	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0325	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	EWS502_BONE	1	1	0.0325	TRUE	0	1	0	48	1	FALSE	ACH-000279
EWS502_BONE	BICD2--DAB2IP	2	3	BICD2	1308	chr9:95526787:-	DAB2IP	36478	chr9:124536539:+	ONLY_REF_SPLICE	YES	80	31	0.06	0.14	0.0216	0.0325	BICD2->BICD_cargo_adaptor_2,chr9:95473645-95527094:-,DAB2IP->DAB2_interacting_protein,Oncogene{Bushman},chr9:124329336-124547809:+	EWS502_BONE	0.06	0.14	0.0541	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	ITFG3--TAOK2	2	3	ITFG3	7629	chr16:304680:+	TAOK2	22449	chr16:29989059:+	ONLY_REF_SPLICE	YES	132	69	0.04	0.07	0.0216	0.0325	ITFG3->chr16:284545-319942:+,chr16:299546-319942:+,TAOK2->TAO_kinase_2,chr16:29984962-30003582:+	EWS502_BONE	0.04	0.07	0.0541	TRUE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	BICD2--DAB2IP	2	2	BICD2	1308	chr9:95526787:-	DAB2IP	37631	chr9:124538477:+	ONLY_REF_SPLICE	YES	80	57	0.05	0.07	0.0216	0.0216	BICD2->BICD_cargo_adaptor_2,chr9:95473645-95527094:-,DAB2IP->DAB2_interacting_protein,Oncogene{Bushman},chr9:124329336-124547809:+	EWS502_BONE	0.05	0.07	0.0432	TRUE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	BICD2--RP11-62C3.6	2	2	BICD2	1308	chr9:95526787:-	RP11-62C3.6	16816	chr9:94971731:+	ONLY_REF_SPLICE	YES	80	0	0.05	1	0.0216	0.0216	BICD2->BICD_cargo_adaptor_2,chr9:95473645-95527094:-,RP11-62C3.6->chr9:94967638-94972440:+	EWS502_BONE	0.05	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	ST3GAL3--GUCY1B2	2	2	ST3GAL3	3470	chr1:44202051:+	GUCY1B2	27054	chr13:51640293:-	ONLY_REF_SPLICE	YES	39	0	0.09	1	0.0216	0.0216	ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,GUCY1B2->chr13:51568647-51654998:-,guanylate_cyclase_1,_soluble,_beta_2_(pseudogene)	EWS502_BONE	0.09	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	TIMM23B--AGAP6	2	2	TIMM23B	6950	chr10:51387763:+	AGAP6	10946	chr10:51749068:+	ONLY_REF_SPLICE	YES	0	15	1	0.21	0.0216	0.0216	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,AGAP6->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_6,chr10:51748078-51770259:+	EWS502_BONE	0.21	1	0.0432	TRUE	2	1	1	8	0	FALSE	ACH-000279
EWS502_BONE	CNOT8--ANXA6	1	5	CNOT8	2216	chr5:154238328:+	ANXA6	36382	chr5:150501821:-	ONLY_REF_SPLICE	NO	211	462	0.03	0.01	0.0108	0.0541	CNOT8->CCR4-NOT_transcription_complex_subunit_8,chr5:154237113-154256353:+,ANXA6->annexin_A6,chr5:150480273-150537443:-	EWS502_BONE	0.01	0.03	0.0649	FALSE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	RP11-123O10.4--GRIP1	1	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0108	0.0541	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	EWS502_BONE	1	1	0.0649	FALSE	93	270	15	244	0	FALSE	ACH-000279
EWS502_BONE	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0.0108	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	EWS502_BONE	1	1	0.0324	TRUE	477	1352	189	275	0	FALSE	ACH-000279
EWS502_BONE	SIPA1L1--RP11-486O13.2	2	1	SIPA1L1	1733	chr14:71787898:+	RP11-486O13.2	54241	chr14:70694289:+	ONLY_REF_SPLICE	YES	7	8	0.3	0.27	0.0216	0.0108	SIPA1L1->chr14:71787166-72207946:+,signal_induced_proliferation_associated_1_like_1,RP11-486O13.2->chr14:70653840-70696904:+	EWS502_BONE	0.27	0.3	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	TYW3--ATP13A5	1	5	TYW3	1267	chr1:75199102:+	ATP13A5	25309	chr3:193061844:-	ONLY_REF_SPLICE	YES	242	0	0.02	1	0.0108	0.0541	TYW3->chr1:75198836-75232362:+,tRNA-yW_synthesizing_protein_3_homolog,ATP13A5->ATPase_13A5,chr3:192992579-193096632:-	EWS502_BONE	0.02	1	0.0649	TRUE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	ABCC1--TMEM204	2	0	ABCC1	1223	chr16:16043656:+	TMEM204	48309	chr16:1604783:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,TMEM204->chr16:1578689-1605581:+,transmembrane_protein_204	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	ACBD6--RALGPS2	2	0	ACBD6	7351	chr1:180366651:-	RALGPS2	34481	chr1:178863054:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx&tcga_normals:1/3694=0.03%,ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-,RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	C17orf76-AS1--FCGRT	2	0	C17orf76-AS1	1593	chr17:16342728:+	FCGRT	21378	chr19:50027764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	C17orf76-AS1->chr17:16342136-16381992:+,FCGRT->Fc_fragment_of_IgG_receptor_and_transporter,chr19:50010073-50029590:+	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	3	0	TRUE	ACH-000279
EWS502_BONE	CPSF6--PPP6R3	2	0	CPSF6	11046	chr12:69656342:+	PPP6R3	54565	chr11:68382100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	ENY2--HSPA8	2	0	ENY2	5314	chr8:110351619:+	HSPA8	15896	chr11:122932039:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ENY2->chr8:110346553-110358182:+,enhancer_of_yellow_2_homolog_(Drosophila),HSPA8->chr11:122928197-122933938:-,heat_shock_protein_family_A_(Hsp70)_member_8	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	GNA14--TTF1	2	0	GNA14	2823	chr9:80143985:-	TTF1	19618	chr9:135267593:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GNA14->G_protein_subunit_alpha_14,chr9:80037995-80263223:-,TTF1->chr9:135251008-135282209:-,transcription_termination_factor,_RNA_polymerase_I	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	GNG11--CCDC88A	2	0	GNG11	1535	chr7:93551545:+	CCDC88A	48988	chr2:55518911:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GNG11->G_protein_subunit_gamma_11,chr7:93551011-93557922:+,CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	HNRNPF--PTPN20A	2	0	HNRNPF	1440	chr10:43904175:-	PTPN20A	28624	chr10:46552531:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F,PTPN20A->chr10:46549955-46641045:-	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	MED15--RPL27	2	0	MED15	3426	chr22:20862033:+	RPL27	29630	chr17:41150766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	MED15->chr22:20850200-20941919:+,mediator_complex_subunit_15,RPL27->chr17:41150290-41154976:+,ribosomal_protein_L27	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	PPP2CB--HAT1	2	0	PPP2CB	2987	chr8:30669836:-	HAT1	23856	chr2:172821859:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	PPP2CB->chr8:30631973-30671830:-,protein_phosphatase_2_catalytic_subunit_beta,HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	RLF--GALNT2	2	0	RLF	1264	chr1:40627308:+	GALNT2	35265	chr1:230410191:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,GALNT2->chr1:230193536-230417870:+,polypeptide_N-acetylgalactosaminyltransferase_2	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	RP11-219G17.4--PLA2G6	2	0	RP11-219G17.4	2765	chr17:76267333:-	PLA2G6	39371	chr22:38509661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_FI:{Testis=[count:23=pct:21.9],Brain=[count:18=pct:2.7],Nerve=[count:11=pct:6.5],Thyroid=[count:8=pct:4.5],Ovary=[count:6=pct:11.3],Colon=[count:5=pct:2.6],Pancreas=[count:3=pct:1.7],Uterus=[count:2=pct:4.7],Spleen=[count:2=pct:1.8],Blood=[count:2=pct:1.1],Prostate=[count:2=pct:3.3],Vagina=[count:1=pct:1.8],Blood_Vessel=[count:1=pct:0.3],Muscle=[count:1=pct:0.4],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},RP11-219G17.4->chr17:76257430-76274573:-,PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI	EWS502_BONE	1	1	0.0216	TRUE	63	15	0	9	0	FALSE	ACH-000279
EWS502_BONE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0108	0.0433	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EWS502_BONE	1	1	0.0541	FALSE	407	2205	196	549	0	FALSE	ACH-000279
EWS502_BONE	SCD5--SEC31A	2	0	SCD5	1552	chr4:83719459:-	SEC31A	48443	chr4:83750211:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LOCAL_REARRANGEMENT:-:[19804],SCD5->chr4:83550692-83720010:-,stearoyl-CoA_desaturase_5,SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-	EWS502_BONE	1	1	0.0216	TRUE	0	1	0	1	1	TRUE	ACH-000279
EWS502_BONE	TBL1XR1--RP11-91K9.1	2	0	TBL1XR1	1353	chr3:176914909:-	RP11-91K9.1	35414	chr3:177613401:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-91K9.1->chr3:177534653-177617012:+	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	UBE2K--APBB2	2	0	UBE2K	1347	chr4:39700010:+	APBB2	32638	chr4:40895428:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	ZNF738--PGBD2	2	0	ZNF738	7035	chr19:21558766:+	PGBD2	17066	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	EWS502_BONE	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	CTC-228N24.2--CTC-228N24.3	1	3	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	0	33	1	0.11	0.0108	0.0325	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	EWS502_BONE	0.11	1	0.0433	TRUE	0	1	0	12	1	TRUE	ACH-000279
EWS502_BONE	RP11-108K3.1--GLDN	1	3	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	NO	1	0	0.8	1	0.0108	0.0325	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	EWS502_BONE	0.8	1	0.0433	FALSE	0	14	0	30	0	FALSE	ACH-000279
EWS502_BONE	PAQR5--SNAPC5	1	2	PAQR5	1110	chr15:69591395:+	SNAPC5	22401	chr15:66786890:-	ONLY_REF_SPLICE	YES	28	316	0.1	0.01	0.0108	0.0216	PAQR5->chr15:69591286-69700119:+,progestin_and_adipoQ_receptor_family_member_5,SNAPC5->chr15:66782473-66790151:-,small_nuclear_RNA_activating_complex_polypeptide_5	EWS502_BONE	0.01	0.1	0.0324	FALSE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	PPP6R2--TMEM62	1	2	PPP6R2	5896	chr22:50832564:+	TMEM62	41045	chr15:43461791:+	ONLY_REF_SPLICE	YES	150	1	0.02	0.75	0.0108	0.0216	PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2,TMEM62->chr15:43415477-43477344:+,transmembrane_protein_62	EWS502_BONE	0.02	0.75	0.0324	TRUE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0108	0.0216	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	EWS502_BONE	1	1	0.0324	FALSE	1	20	0	46	0	FALSE	ACH-000279
EWS502_BONE	AC002066.1--AC073130.1	1	1	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0108	0.0108	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	EWS502_BONE	0.33	1	0.0216	FALSE	0	3	0	33	0	FALSE	ACH-000279
EWS502_BONE	ASXL2--RFTN2	1	1	ASXL2	1351	chr2:26101035:-	RFTN2	41974	chr2:198437004:-	ONLY_REF_SPLICE	YES	33	30	0.06	0.06	0.0108	0.0108	ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,RFTN2->chr2:198432948-198540769:-,raftlin_family_member_2	EWS502_BONE	0.06	0.06	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	BTRC--ZMIZ1	1	1	BTRC	2655	chr10:103190209:+	ZMIZ1	33736	chr10:81036938:+	ONLY_REF_SPLICE	YES	30	4	0.06	0.33	0.0108	0.0108	BTRC->Oncogene{Bushman},beta-transducin_repeat_containing_E3_ubiquitin_protein_ligase,chr10:103113820-103317078:+,ZMIZ1->Oncogene{Bushman},chr10:80828792-81076276:+,zinc_finger_MIZ-type_containing_1	EWS502_BONE	0.06	0.33	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	CPB2-AS1--ZC3H13	1	1	CPB2-AS1	1160	chr13:46627100:+	ZC3H13	18150	chr13:46585689:-	ONLY_REF_SPLICE	NO	4	184	0.33	0.01	0.0108	0.0108	LOCAL_INVERSION:+:-:[47],CPB2-AS1->CPB2_antisense_RNA_1,chr13:46626941-46687467:+,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	EWS502_BONE	0.01	0.33	0.0216	FALSE	0	0	0	2	0	FALSE	ACH-000279
EWS502_BONE	CPSF6--CNOT2	1	1	CPSF6	11046	chr12:69656342:+	CNOT2	42115	chr12:70732223:+	ONLY_REF_SPLICE	NO	345	143	0.01	0.01	0.0108	0.0108	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+	EWS502_BONE	0.01	0.01	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	DAZAP1--TCF3	1	1	DAZAP1	1234	chr19:1407801:+	TCF3	27794	chr19:1627425:-	ONLY_REF_SPLICE	NO	361	593	0.01	0	0.0108	0.0108	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+,TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3	EWS502_BONE	0	0.01	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	HECTD4--PPP3CA	1	1	HECTD4	43974	chr12:112664447:-	PPP3CA	95701	chr4:101984514:-	ONLY_REF_SPLICE	YES	25	50	0.07	0.04	0.0108	0.0108	HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,PPP3CA->chr4:101944566-102269435:-,protein_phosphatase_3_catalytic_subunit_alpha	EWS502_BONE	0.04	0.07	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	HNRNPF--PTPN20A	1	1	HNRNPF	2450	chr10:43903165:-	PTPN20A	26073	chr10:46568239:-	ONLY_REF_SPLICE	YES	41	0	0.05	1	0.0108	0.0108	HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F,PTPN20A->chr10:46549955-46641045:-	EWS502_BONE	0.05	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	MYO10--BASP1	1	1	MYO10	21134	chr5:16754937:-	BASP1	57021	chr5:17275317:+	ONLY_REF_SPLICE	NO	426	1433	0	0	0.0108	0.0108	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},MYO10->chr5:16665395-16936372:-,myosin_X,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	EWS502_BONE	0	0	0.0216	FALSE	0	0	0	2	0	FALSE	ACH-000279
EWS502_BONE	POLE4--RP11-355F16.1	1	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	NO	315	0	0.01	1	0.0108	0.0108	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	EWS502_BONE	0.01	1	0.0216	FALSE	5	7	0	37	0	FALSE	ACH-000279
EWS502_BONE	PPP6R2--TMEM62	1	1	PPP6R2	7083	chr22:50845304:+	TMEM62	43931	chr15:43473379:+	ONLY_REF_SPLICE	YES	97	2	0.02	0.5	0.0108	0.0108	PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2,TMEM62->chr15:43415477-43477344:+,transmembrane_protein_62	EWS502_BONE	0.02	0.5	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	PRPF39--CYB561A3	1	1	PRPF39	1151	chr14:45553452:+	CYB561A3	21135	chr11:61125300:-	ONLY_REF_SPLICE	YES	95	158	0.02	0.01	0.0108	0.0108	PRPF39->chr14:45553302-45585485:+,pre-mRNA_processing_factor_39,CYB561A3->chr11:61116217-61129771:-,cytochrome_b561_family_member_A3	EWS502_BONE	0.01	0.02	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	PRRG1--LANCL3	1	1	PRRG1	4586	chrX:37285253:+	LANCL3	17056	chrX:37514941:+	ONLY_REF_SPLICE	YES	42	2	0.05	0.5	0.0108	0.0108	PRRG1->chrX:37208528-37316548:+,proline_rich_and_Gla_domain_1,LANCL3->LanC_like_3,chrX:37430822-37543716:+	EWS502_BONE	0.05	0.5	0.0216	TRUE	1	2	0	5	2	TRUE	ACH-000279
EWS502_BONE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	26	0.33	0.07	0.0108	0.0108	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	EWS502_BONE	0.07	0.33	0.0216	FALSE	0	48	1	163	0	FALSE	ACH-000279
EWS502_BONE	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	92	1	0.02	0.0108	0.0108	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	EWS502_BONE	0.02	1	0.0216	TRUE	64	13	3	59	0	FALSE	ACH-000279
EWS502_BONE	SBF2--CDKL5	1	1	SBF2	26328	chr11:9917490:-	CDKL5	67278	chrX:18582597:+	ONLY_REF_SPLICE	YES	11	3	0.15	0.4	0.0108	0.0108	SBF2->SET_binding_factor_2,chr11:9800214-10315754:-,CDKL5->chrX:18443703-18671749:+,cyclin_dependent_kinase_like_5	EWS502_BONE	0.15	0.4	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000279
EWS502_BONE	SPECC1L--AC008132.1	1	1	SPECC1L	1166	chr22:24666951:+	AC008132.1	28920	chr22:18723545:+	ONLY_REF_SPLICE	NO	67	0	0.03	1	0.0108	0.0108	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,AC008132.1->chr22:18721427-18745407:+	EWS502_BONE	0.03	1	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	TCF3--NDUFS7	1	1	TCF3	4502	chr19:1646354:-	NDUFS7	24907	chr19:1387810:+	ONLY_REF_SPLICE	YES	419	19	0	0.1	0.0108	0.0108	TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,NDUFS7->NADH:ubiquinone_oxidoreductase_core_subunit_S7,chr19:1383526-1395583:+	EWS502_BONE	0	0.1	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	TTC7B--TRAK1	1	1	TTC7B	3629	chr14:91247082:-	TRAK1	61873	chr3:42260986:+	ONLY_REF_SPLICE	NO	20	46	0.09	0.04	0.0108	0.0108	TTC7B->chr14:91006932-91282823:-,tetratricopeptide_repeat_domain_7B,TRAK1->chr3:42055294-42267381:+,trafficking_protein,_kinesin_binding_1	EWS502_BONE	0.04	0.09	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	ZNF519--NMI	1	1	ZNF519	2343	chr18:14124349:-	NMI	30787	chr2:152128246:-	ONLY_REF_SPLICE	NO	52	230	0.04	0.01	0.0108	0.0108	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,NMI->N-myc_and_STAT_interactor,chr2:152126979-152146571:-	EWS502_BONE	0.01	0.04	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000279
EWS502_BONE	ZNF738--DTNB	1	1	ZNF738	7035	chr19:21558766:+	DTNB	28223	chr2:25754466:-	ONLY_REF_SPLICE	NO	249	71	0.01	0.03	0.0108	0.0108	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,DTNB->chr2:25600067-25896503:-,dystrobrevin_beta	EWS502_BONE	0.01	0.03	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000279
BXPC3_PANCREAS	TIMM23B--LINC00843	64	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6742	0.158	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BXPC3_PANCREAS	1	1	0.8322	TRUE	508	994	45	981	0	FALSE	ACH-000535
BXPC3_PANCREAS	TIMM23--RP11-464F9.1	36	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	157	2	0.2	0.95	0.3793	0.0421	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BXPC3_PANCREAS	0.2	0.95	0.4214	TRUE	519	3926	326	965	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ND6--MT-TE	30	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.316	0.0211	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BXPC3_PANCREAS	1	1	0.3371	FALSE	499	1288	110	792	0	FALSE	ACH-000535
BXPC3_PANCREAS	RP11-680G10.1--GSE1	23	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	13	1	0.69	0.2423	0.0632	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BXPC3_PANCREAS	0.69	1	0.3055	TRUE	465	1949	224	605	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-TA--MT-TC	23	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2423	0.0421	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BXPC3_PANCREAS	1	1	0.2844	FALSE	462	80	0	856	0	FALSE	ACH-000535
BXPC3_PANCREAS	MX1--ABCG1	16	4	MX1	15624	chr21:42812952:+	ABCG1	39490	chr21:43691180:+	ONLY_REF_SPLICE	YES	95	0	0.17	1	0.1686	0.0421	MX1->MX_dynamin_like_GTPase_1,chr21:42792231-42831141:+,ABCG1->ATP_binding_cassette_subfamily_G_member_1,chr21:43619799-43717354:+	BXPC3_PANCREAS	0.17	1	0.2107	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	MT-ATP6--MT-RNR2	16	2	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	10184	0	0	1	0.1686	0.0211	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BXPC3_PANCREAS	0	1	0.1897	FALSE	63	17	1	58	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ND6--MT-TE	15	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.158	0.0211	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BXPC3_PANCREAS	1	1	0.1791	FALSE	499	1288	110	792	0	FALSE	ACH-000535
BXPC3_PANCREAS	CTD-2008L17.1--RP11-456O19.2	11	11	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1159	0.1159	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	BXPC3_PANCREAS	1	1	0.2318	FALSE	20	187	4	79	0	FALSE	ACH-000535
BXPC3_PANCREAS	HSPBP1--GRK5	13	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.137	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	BXPC3_PANCREAS	1	1	0.137	TRUE	1	39	0	134	39	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ND4--MT-ATP8	13	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.137	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BXPC3_PANCREAS	1	1	0.137	FALSE	230	193	14	283	0	FALSE	ACH-000535
BXPC3_PANCREAS	PPM1H--LINC00393	12	2	PPM1H	6967	chr12:63182006:-	LINC00393	24367	chr13:73987773:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.1264	0.0211	PPM1H->chr12:63037762-63328817:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1H,LINC00393->chr13:73987610-74222390:-,long_intergenic_non-protein_coding_RNA_393	BXPC3_PANCREAS	0.93	1	0.1475	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	KRT5--MT-CO3	12	1	KRT5	4002	chr12:52911470:-	MT-CO3	10585	chrM:9678:+	INCL_NON_REF_SPLICE	NO	5814	12264	0	0	0.1264	0.0105	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BXPC3_PANCREAS	0	0	0.1369	FALSE	0	0	0	4	0	FALSE	ACH-000535
BXPC3_PANCREAS	ARHGEF9--RP11-357C3.3	10	4	ARHGEF9	15143	chrX:62875374:-	RP11-357C3.3	27225	chrX:62652371:-	ONLY_REF_SPLICE	YES	4	21	0.78	0.4	0.1053	0.0421	NEIGHBORS[73896],ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-,RP11-357C3.3->chrX:62563106-62780951:-	BXPC3_PANCREAS	0.4	0.78	0.1474	FALSE	0	0	0	1	0	FALSE	ACH-000535
BXPC3_PANCREAS	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1159	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BXPC3_PANCREAS	1	1	0.1159	TRUE	0	0	0	434	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ND6--MT-TE	7	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.78	1	0.0737	0.1159	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BXPC3_PANCREAS	0.78	1	0.1896	FALSE	499	1288	110	792	0	FALSE	ACH-000535
BXPC3_PANCREAS	RP11-680G10.1--GSE1	8	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.58	0.0843	0.0632	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BXPC3_PANCREAS	0.58	1	0.1475	TRUE	458	1351	185	561	0	FALSE	ACH-000535
BXPC3_PANCREAS	ALDOA--KRT17	8	1	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	2481	2	0	0.82	0.0843	0.0105	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	BXPC3_PANCREAS	0	0.82	0.0948	FALSE	0	0	0	10	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0843	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BXPC3_PANCREAS	1	1	0.0843	FALSE	230	198	14	283	0	FALSE	ACH-000535
BXPC3_PANCREAS	ZNF654--HMGB2	8	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0843	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	BXPC3_PANCREAS	1	1	0.0843	TRUE	0	0	0	518	0	FALSE	ACH-000535
BXPC3_PANCREAS	USP47--MICAL2	7	3	USP47	7470	chr11:11913653:+	MICAL2	52474	chr11:12225797:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0737	0.0316	USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2	BXPC3_PANCREAS	0.83	1	0.1053	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	FXYD3--MT-ND5	7	2	FXYD3	8292	chr19:35614212:+	MT-ND5	13036	chrM:13064:+	INCL_NON_REF_SPLICE	YES	2814	2979	0	0	0.0737	0.0211	FXYD3->FXYD_domain_containing_ion_transport_regulator_3,chr19:35606732-35615228:+,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	BXPC3_PANCREAS	0	0	0.0948	FALSE	0	0	0	3	0	FALSE	ACH-000535
BXPC3_PANCREAS	NRIP1--AF127936.7	6	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.48	1	0.0632	0.0527	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BXPC3_PANCREAS	0.48	1	0.1159	FALSE	125	705	46	456	0	FALSE	ACH-000535
BXPC3_PANCREAS	ALDOA--KRT17	7	0	ALDOA	7476	chr16:30077248:+	KRT17	15303	chr17:39780798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0737	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	BXPC3_PANCREAS	1	1	0.0737	TRUE	0	0	0	10	0	TRUE	ACH-000535
BXPC3_PANCREAS	RPSAP52--HMGA2	5	8	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	19	372	0.41	0.03	0.0527	0.0843	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	BXPC3_PANCREAS	0.03	0.41	0.137	FALSE	0	59	0	125	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ND6--MT-TE	4	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0.1159	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BXPC3_PANCREAS	1	1	0.158	FALSE	499	1288	110	792	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ATP6--MT-RNR2	6	2	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	9742	5149	0	0	0.0632	0.0211	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BXPC3_PANCREAS	0	0	0.0843	FALSE	63	17	1	58	0	FALSE	ACH-000535
BXPC3_PANCREAS	KRT5--MT-CO3	6	0	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BXPC3_PANCREAS	1	1	0.0632	FALSE	0	0	0	18	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ND6--MT-TE	5	2	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0527	0.0211	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BXPC3_PANCREAS	0.78	1	0.0738	FALSE	499	1288	110	792	0	FALSE	ACH-000535
BXPC3_PANCREAS	NRIP1--AF127936.7	4	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.4	1	0.0421	0.0632	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BXPC3_PANCREAS	0.4	1	0.1053	FALSE	164	806	69	479	0	FALSE	ACH-000535
BXPC3_PANCREAS	USP47--MICAL2	4	6	USP47	8567	chr11:11919240:+	MICAL2	51149	chr11:12219034:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0421	0.0632	USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2	BXPC3_PANCREAS	1	1	0.1053	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	FGFR2--COL14A1	5	1	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	52	0	0.1	1	0.0527	0.0105	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	BXPC3_PANCREAS	0.1	1	0.0632	TRUE	0	0	0	32	0	FALSE	ACH-000535
BXPC3_PANCREAS	ACTN4--MT-CO1	4	4	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	2180	17379	0	0	0.0421	0.0421	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	BXPC3_PANCREAS	0	0	0.0842	FALSE	0	0	0	30	0	FALSE	ACH-000535
BXPC3_PANCREAS	MAZ--KRT17	5	0	MAZ	5417	chr16:29821843:+	KRT17	10504	chr17:39780814:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	MAZ->MYC_associated_zinc_finger_protein,chr16:29817427-29823649:+,KRT17->chr17:39775689-39781094:-,keratin_17	BXPC3_PANCREAS	1	1	0.0527	TRUE	0	0	0	2	0	TRUE	ACH-000535
BXPC3_PANCREAS	MT-ND4--MT-ATP8	5	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BXPC3_PANCREAS	1	1	0.0527	FALSE	231	205	14	283	0	FALSE	ACH-000535
BXPC3_PANCREAS	PPP1R12C--CNN2	5	0	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0527	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	BXPC3_PANCREAS	1	1	0.0527	TRUE	35	34	3	30	0	FALSE	ACH-000535
BXPC3_PANCREAS	RP11-96H19.1--RP11-446N19.1	4	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0421	0.0421	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BXPC3_PANCREAS	1	1	0.0842	FALSE	515	4851	409	746	0	FALSE	ACH-000535
BXPC3_PANCREAS	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BXPC3_PANCREAS	1	1	0.0527	FALSE	0	0	0	189	0	FALSE	ACH-000535
BXPC3_PANCREAS	NRIP1--AF127936.7	4	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0421	0.0316	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BXPC3_PANCREAS	0.64	1	0.0737	FALSE	292	1546	117	613	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-TA--MT-TC	3	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.0632	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BXPC3_PANCREAS	1	1	0.0948	FALSE	462	80	0	856	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ND4--MT-ATP8	4	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	10484	1747	0	0	0.0421	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BXPC3_PANCREAS	0	0	0.0526	FALSE	231	217	16	283	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-TA--MT-TC	3	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.0527	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BXPC3_PANCREAS	1	1	0.0843	FALSE	462	80	0	856	0	FALSE	ACH-000535
BXPC3_PANCREAS	RP11-123O10.4--GRIP1	4	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0421	0.0105	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BXPC3_PANCREAS	1	1	0.0526	FALSE	416	2512	207	587	0	FALSE	ACH-000535
BXPC3_PANCREAS	XXbac-BPG252P9.9--IFI27	4	1	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	1731	0	0	1	0.0421	0.0105	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	BXPC3_PANCREAS	0	1	0.0526	FALSE	0	2	0	13	2	FALSE	ACH-000535
BXPC3_PANCREAS	DNAJC25--UGCG	4	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0421	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	BXPC3_PANCREAS	1	1	0.0421	TRUE	50	73	10	50	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ND4--MT-ATP8	4	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BXPC3_PANCREAS	1	1	0.0421	FALSE	231	204	14	283	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ND4--MT-ATP8	3	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	10647	4	0	0.6	0.0316	0.0316	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BXPC3_PANCREAS	0	0.6	0.0632	FALSE	231	217	16	283	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ND4--MT-ATP8	3	3	MT-ND4	1779	chrM:11538:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10610	46	0	0.12	0.0316	0.0316	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BXPC3_PANCREAS	0	0.12	0.0632	FALSE	231	217	16	283	0	FALSE	ACH-000535
BXPC3_PANCREAS	KRT13--PKM	3	2	KRT13	3926	chr17:39659032:-	PKM	15354	chr15:72511411:-	INCL_NON_REF_SPLICE	YES	3201	1951	0	0	0.0316	0.0211	GTEx&tcga_normals:46/3694=1.25%,GTEx:0.92%,KRT13->chr17:39657233-39661957:-,keratin_13,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	BXPC3_PANCREAS	0	0	0.0527	FALSE	0	0	0	1	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1158	chrM:8684:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	10639	5321	0	0	0.0316	0.0211	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BXPC3_PANCREAS	0	0	0.0527	FALSE	63	17	1	58	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11169	0	0	1	0.0316	0.0211	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BXPC3_PANCREAS	0	1	0.0527	FALSE	231	217	16	283	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1452	chrM:11211:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	11758	4	0	0.56	0.0316	0.0211	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BXPC3_PANCREAS	0	0.56	0.0527	FALSE	231	217	16	283	0	FALSE	ACH-000535
BXPC3_PANCREAS	MB21D2--FGF12	3	1	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	10	1	0.29	0.8	0.0316	0.0105	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	BXPC3_PANCREAS	0.29	0.8	0.0421	FALSE	0	17	0	46	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	8842	0	0	1	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BXPC3_PANCREAS	0	1	0.0421	FALSE	63	17	1	58	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1132	chrM:8658:+	MT-RNR2	5436	chrM:2425:+	INCL_NON_REF_SPLICE	YES	8842	6804	0	0	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BXPC3_PANCREAS	0	0	0.0421	FALSE	63	17	1	58	0	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ND4--MT-ATP8	3	1	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	12582	477	0	0.01	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BXPC3_PANCREAS	0	0.01	0.0421	FALSE	231	217	16	283	0	FALSE	ACH-000535
BXPC3_PANCREAS	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0.0527	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BXPC3_PANCREAS	1	1	0.0738	FALSE	407	2205	196	549	0	FALSE	ACH-000535
BXPC3_PANCREAS	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0.0527	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BXPC3_PANCREAS	1	1	0.0738	FALSE	467	2173	244	435	0	FALSE	ACH-000535
BXPC3_PANCREAS	USP47--MICAL2	2	5	USP47	8567	chr11:11919240:+	MICAL2	52474	chr11:12225797:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0.0527	USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2	BXPC3_PANCREAS	1	1	0.0738	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	YBX3--MT-CO3	3	1	YBX3	1219	chr12:10875693:-	MT-CO3	20797	chrM:9412:+	INCL_NON_REF_SPLICE	YES	4	9919	0.5	0	0.0316	0.0105	YBX3->Y-box_binding_protein_3,chr12:10851683-10875911:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BXPC3_PANCREAS	0	0.5	0.0421	FALSE	25	0	0	6	0	FALSE	ACH-000535
BXPC3_PANCREAS	HSPBP1--GRK5	3	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	BXPC3_PANCREAS	1	1	0.0316	TRUE	1	39	0	134	39	FALSE	ACH-000535
BXPC3_PANCREAS	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1123	chrM:8649:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BXPC3_PANCREAS	1	1	0.0316	FALSE	63	17	1	58	0	FALSE	ACH-000535
BXPC3_PANCREAS	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	BXPC3_PANCREAS	1	1	0.0316	TRUE	22	156	2	142	0	FALSE	ACH-000535
BXPC3_PANCREAS	RP11-108K3.1--GLDN	2	4	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0211	0.0421	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	BXPC3_PANCREAS	0.86	1	0.0632	FALSE	0	14	0	30	0	FALSE	ACH-000535
BXPC3_PANCREAS	TP63--CLDN1	3	0	TP63	4502	chr3:189507631:+	CLDN1	28146	chr3:190030825:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_v2:{count=7;pct=0.08%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=1},TP63->chr3:189349205-189615068:+,tumor_protein_p63,CLDN1->chr3:190023490-190040264:-,claudin_1	BXPC3_PANCREAS	1	1	0.0316	TRUE	0	5	1	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	U2AF2--MT-CO3	3	0	U2AF2	4734	chr19:56171953:+	MT-CO3	15534	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	U2AF2->U2_small_nuclear_RNA_auxiliary_factor_2,chr19:56165512-56186081:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BXPC3_PANCREAS	1	1	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000535
BXPC3_PANCREAS	RP11-108K3.1--GLDN	2	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0211	0.0211	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	BXPC3_PANCREAS	0.8	1	0.0422	FALSE	1	20	0	46	0	FALSE	ACH-000535
BXPC3_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0105	0.0632	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BXPC3_PANCREAS	1	1	0.0737	FALSE	192	492	57	212	0	FALSE	ACH-000535
BXPC3_PANCREAS	CTD-2008L17.1--RP11-456O19.2	1	5	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	2	1	0.75	0.0105	0.0527	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	BXPC3_PANCREAS	0.75	1	0.0632	FALSE	33	240	4	98	0	FALSE	ACH-000535
BXPC3_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0105	0.0527	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BXPC3_PANCREAS	1	1	0.0632	FALSE	275	511	55	178	0	FALSE	ACH-000535
BXPC3_PANCREAS	USP47--MICAL2	2	1	USP47	6206	chr11:11906127:+	MICAL2	52474	chr11:12225797:+	ONLY_REF_SPLICE	YES	6	0	0.33	1	0.0211	0.0105	USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47,MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2	BXPC3_PANCREAS	0.33	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	CAND1--TMTC3	2	0	CAND1	14326	chr12:67701272:+	TMTC3	29570	chr12:88542065:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1,TMTC3->chr12:88536073-88593664:+,transmembrane_and_tetratricopeptide_repeat_containing_3	BXPC3_PANCREAS	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	PLEKHM2--DHRS3	2	0	PLEKHM2	1287	chr1:16011113:+	DHRS3	23262	chr1:12640694:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PLEKHM2->chr1:16010827-16061264:+,pleckstrin_homology_and_RUN_domain_containing_M2,DHRS3->Oncogene{Bushman},chr1:12627939-12677737:-,dehydrogenase/reductase_(SDR_family)_member_3	BXPC3_PANCREAS	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	RNF126--BSG	2	0	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	BXPC3_PANCREAS	1	1	0.0211	TRUE	0	2	0	12	0	TRUE	ACH-000535
BXPC3_PANCREAS	RP11-115J23.1--RP11-466I1.1	2	0	RP11-115J23.1	2304	chr11:28763455:+	RP11-466I1.1	12826	chr11:29233202:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	NEIGHBORS[96135],RP11-115J23.1->chr11:28724162-29085368:+,RP11-466I1.1->chr11:29181503-29288281:+	BXPC3_PANCREAS	1	1	0.0211	FALSE	0	0	0	3	0	FALSE	ACH-000535
BXPC3_PANCREAS	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BXPC3_PANCREAS	1	1	0.0211	FALSE	93	270	15	244	0	FALSE	ACH-000535
BXPC3_PANCREAS	SECISBP2--LMO7	2	0	SECISBP2	2292	chr9:91934712:+	LMO7	55147	chr13:76408362:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SECISBP2->SECIS_binding_protein_2,chr9:91933421-91974557:+,LMO7->LIM_domain_7,Oncogene{Bushman},chr13:76194570-76434004:+	BXPC3_PANCREAS	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	ZMIZ1-AS1--ARID5B	2	0	ZMIZ1-AS1	3149	chr10:80825504:-	ARID5B	21163	chr10:63759850:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ZMIZ1-AS1->ZMIZ1_antisense_RNA_1,chr10:80703085-80827652:-,ARID5B->AT-rich_interaction_domain_5B,chr10:63661059-63856703:+	BXPC3_PANCREAS	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000535
BXPC3_PANCREAS	CMC2--CDYL2	1	2	CMC2	2457	chr16:81040339:-	CDYL2	19859	chr16:80719026:-	ONLY_REF_SPLICE	YES	248	4	0.01	0.43	0.0105	0.0211	CMC2->C-x9-C_motif_containing_2,chr16:81009698-81053875:-,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	BXPC3_PANCREAS	0.01	0.43	0.0316	FALSE	0	0	0	5	0	FALSE	ACH-000535
BXPC3_PANCREAS	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0105	0.0211	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	BXPC3_PANCREAS	0.75	1	0.0316	FALSE	0	30	1	55	0	FALSE	ACH-000535
BXPC3_PANCREAS	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0105	0.0211	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	BXPC3_PANCREAS	0.75	1	0.0316	FALSE	1	20	0	46	0	FALSE	ACH-000535
BXPC3_PANCREAS	AMMECR1--TMEM164	1	1	AMMECR1	6630	chrX:109507717:-	TMEM164	24524	chrX:109352308:+	ONLY_REF_SPLICE	NO	65	42	0.03	0.05	0.0105	0.0105	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[11452],AMMECR1->Alport_syndrome,_mental_retardation,_midface_hypoplasia_and_elliptocytosis_chromosomal_region_gene_1,chrX:109437414-109683461:-,TMEM164->chrX:109245859-109425962:+,transmembrane_protein_164	BXPC3_PANCREAS	0.03	0.05	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000535
BXPC3_PANCREAS	ANKHD1--CYSTM1	1	1	ANKHD1	1460	chr5:139781858:+	CYSTM1	47050	chr5:139622890:+	ONLY_REF_SPLICE	YES	34	628	0.06	0	0.0105	0.0105	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,CYSTM1->chr5:139554227-139661637:+,cysteine_rich_transmembrane_module_containing_1	BXPC3_PANCREAS	0	0.06	0.021	FALSE	1	2	1	5	0	FALSE	ACH-000535
BXPC3_PANCREAS	MET--CAV1	1	1	MET	1188	chr7:116312631:+	CAV1	33564	chr7:116199000:+	ONLY_REF_SPLICE	YES	299	3664	0.01	0	0.0105	0.0105	{Klijn_CCL:Head-Neck=1},MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	BXPC3_PANCREAS	0	0.01	0.021	FALSE	0	2	0	1	2	FALSE	ACH-000535
BXPC3_PANCREAS	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	12	4	0.14	0.33	0.0105	0.0105	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BXPC3_PANCREAS	0.14	0.33	0.021	FALSE	7	44	2	41	0	FALSE	ACH-000535
BXPC3_PANCREAS	PTPRK--FUS	1	1	PTPRK	17404	chr6:128505577:-	FUS	60253	chr16:31199646:+	ONLY_REF_SPLICE	YES	91	557	0.02	0	0.0105	0.0105	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	BXPC3_PANCREAS	0	0.02	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000535
BXPC3_PANCREAS	RNF152--RP11-879F14.1	1	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	NO	6	0	0.25	1	0.0105	0.0105	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	BXPC3_PANCREAS	0.25	1	0.021	FALSE	119	124	24	18	0	FALSE	ACH-000535
BXPC3_PANCREAS	RNF152--RP11-879F14.1	1	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	NO	6	0	0.25	1	0.0105	0.0105	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	BXPC3_PANCREAS	0.25	1	0.021	FALSE	275	472	65	43	0	FALSE	ACH-000535
BXPC3_PANCREAS	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	12	0.67	0.14	0.0105	0.0105	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	BXPC3_PANCREAS	0.14	0.67	0.021	FALSE	16	356	14	466	0	FALSE	ACH-000535
BXPC3_PANCREAS	RP13-188A5.1--KLF8	1	1	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	1	15	0.67	0.12	0.0105	0.0105	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	BXPC3_PANCREAS	0.12	0.67	0.021	TRUE	10	78	6	20	0	FALSE	ACH-000535
BXPC3_PANCREAS	ZFAS1--SNX5	1	1	ZFAS1	2031	chr20:47895745:+	SNX5	11741	chr20:17941969:-	ONLY_REF_SPLICE	YES	895	534	0	0	0.0105	0.0105	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	BXPC3_PANCREAS	0	0	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000535
BXPC3_PANCREAS	ZMYM4--SFPQ	1	1	ZMYM4	3227	chr1:35791006:+	SFPQ	47595	chr1:35643637:-	ONLY_REF_SPLICE	YES	21	67	0.09	0.03	0.0105	0.0105	GTEx_FI:{Brain=[count:2=pct:0.3],Colon=[count:1=pct:0.5],Ovary=[count:1=pct:1.9]},LOCAL_INVERSION:+:-:[75819],ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	BXPC3_PANCREAS	0.03	0.09	0.021	TRUE	2	10	0	3	0	FALSE	ACH-000535
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAT5B--STAT3	834	10	STAT5B	1460	chr17:40428266:-	STAT3	33971	chr17:40483549:-	ONLY_REF_SPLICE	YES	2	244	1	0.78	9.7334	0.1167	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[36617],STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B,STAT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:40465342-40540586:-,signal_transducer_and_activator_of_transcription_3	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	9.8501	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--RUNX1T1	296	126	RUNX1	28357	chr21:36231771:-	RUNX1T1	55630	chr8:93029591:-	ONLY_REF_SPLICE	YES	242	0	0.64	1	3.4546	1.4705	Mitelman{Heart=2,Skin=11,ALL=2,AML=17},YOSHIHARA_TCGA_num_samples[LAML:7],chimerdb_omim:{acutemyelogenousleukemia},chimerdb_omim:{leukemia},chimerdb_pubmed{acute myeloid leukemia (AML), acute myelogenous leukemia,Promyelocytic leukemia (PML),acute myelocytic leukaemia,Acute myeloid leukaemia, M2 type, with dysplastic features and Auer rods, good prognosis,acute myeloid leukemia,acute myeloid leukemia, chronic myelogenous leukemia,Acute myeloid leukaemia (AML),acute myeloid leukemia with eosinophilia ,de novo cases of acute myeloid leukemia,acute myeloid leukemia(AML),Acute myeloid leukemia,pediatric acute myelogenous leukemia,Acute myelocytic leukemia(AML),AML(acute myeloid leukemia),leukemia,severalleukaemia,acute nonlymphoid leukemia,Primary granulocytic sarcoma (GS),core binding factor [CBF] leukemias,myeloid leukemia,childhood acute myeloid leukemia (AML),Acute myelogenous leukemia,myelodysplastic syndromes (MDS),acute myelocitic leukemia (AML),granulocytic sarcoma,acute myelogenous leukemia,Acute myeloid leukemia (AML),acute promyelocytic leukemia (APL),acute myeloid leukemia (AML) ,acute myeloid leukaemia(AML),acute promyelocytic leukemia(APL),acute myelogenous leukemia (AML),AML,nonHodgkin's lymphoma (NHL),acute myelogenous leukemia ,Acute leukemia,acute myelogenous leukemia with maturation (AMLM2),acute myeloblastic leukemia,acute myelogenous leukemia(AML), minimal residual diseases (MRD),acute myelogenous leukaemia,acute myeloblastic leukaemia,acute myelogenous leukemia(AML),spinal granulocytic sarcoma,Myelomastocytic leukemia,acute myeloid leukaemia (AML),acute myeloid leukaemia,acute leukemia},{Klijn_CCL:Lymphoid=1},RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,RUNX1T1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RUNX1_translocation_partner_1,chr8:92967203-93115514:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	4.9251	TRUE	0	7	0	2	7	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	272	107	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	1	1	1	3.1745	1.2488	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	4.4233	TRUE	361	258	24	38	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DIS3L--ZWILCH	138	117	DIS3L	12838	chr15:66615923:+	ZWILCH	38321	chr15:66829506:+	ONLY_REF_SPLICE	YES	72	81	0.78	0.76	1.6106	1.3655	DIS3L->DIS3_like_exosome_3'-5'_exoribonuclease,chr15:66585555-66626236:+,ZWILCH->chr15:66797297-66842115:+,zwilch_kinetochore_protein	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.78	2.9761	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	107	57	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2488	0.6652	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.914	TRUE	508	994	45	981	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	65	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	425	26	0.14	0.72	0.7586	0.0233	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.72	0.7819	TRUE	519	3926	326	965	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--RUNX1T1	22	131	RUNX1	28357	chr21:36231771:-	RUNX1T1	55562	chr8:93029659:-	ONLY_REF_SPLICE	YES	242	1	0.39	0.99	0.2568	1.5289	Mitelman{Heart=2,Skin=11,ALL=2,AML=17},YOSHIHARA_TCGA_num_samples[LAML:7],chimerdb_omim:{acutemyelogenousleukemia},chimerdb_omim:{leukemia},chimerdb_pubmed{acute myeloid leukemia (AML), acute myelogenous leukemia,Promyelocytic leukemia (PML),acute myelocytic leukaemia,Acute myeloid leukaemia, M2 type, with dysplastic features and Auer rods, good prognosis,acute myeloid leukemia,acute myeloid leukemia, chronic myelogenous leukemia,Acute myeloid leukaemia (AML),acute myeloid leukemia with eosinophilia ,de novo cases of acute myeloid leukemia,acute myeloid leukemia(AML),Acute myeloid leukemia,pediatric acute myelogenous leukemia,Acute myelocytic leukemia(AML),AML(acute myeloid leukemia),leukemia,severalleukaemia,acute nonlymphoid leukemia,Primary granulocytic sarcoma (GS),core binding factor [CBF] leukemias,myeloid leukemia,childhood acute myeloid leukemia (AML),Acute myelogenous leukemia,myelodysplastic syndromes (MDS),acute myelocitic leukemia (AML),granulocytic sarcoma,acute myelogenous leukemia,Acute myeloid leukemia (AML),acute promyelocytic leukemia (APL),acute myeloid leukemia (AML) ,acute myeloid leukaemia(AML),acute promyelocytic leukemia(APL),acute myelogenous leukemia (AML),AML,nonHodgkin's lymphoma (NHL),acute myelogenous leukemia ,Acute leukemia,acute myelogenous leukemia with maturation (AMLM2),acute myeloblastic leukemia,acute myelogenous leukemia(AML), minimal residual diseases (MRD),acute myelogenous leukaemia,acute myeloblastic leukaemia,acute myelogenous leukemia(AML),spinal granulocytic sarcoma,Myelomastocytic leukemia,acute myeloid leukaemia (AML),acute myeloid leukaemia,acute leukemia},{Klijn_CCL:Lymphoid=1},RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,RUNX1T1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RUNX1_translocation_partner_1,chr8:92967203-93115514:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.99	1.7857	TRUE	0	7	0	2	7	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCBP2--MTND2P28	47	1	PCBP2	11835	chr12:53856343:+	MTND2P28	25766	chr1:565066:+	INCL_NON_REF_SPLICE	YES	2602	0	0.02	1	0.5485	0.0117	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.5602	TRUE	0	0	0	9	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	38	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4435	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4435	TRUE	0	0	0	518	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--RUNX1T1	1	132	RUNX1	29506	chr21:36228596:-	RUNX1T1	55562	chr8:93029659:-	ONLY_REF_SPLICE	YES	256	1	0.34	0.99	0.0117	1.5405	Mitelman{Heart=2,Skin=11,ALL=2,AML=17},YOSHIHARA_TCGA_num_samples[LAML:7],chimerdb_omim:{acutemyelogenousleukemia},chimerdb_omim:{leukemia},chimerdb_pubmed{acute myeloid leukemia (AML), acute myelogenous leukemia,Promyelocytic leukemia (PML),acute myelocytic leukaemia,Acute myeloid leukaemia, M2 type, with dysplastic features and Auer rods, good prognosis,acute myeloid leukemia,acute myeloid leukemia, chronic myelogenous leukemia,Acute myeloid leukaemia (AML),acute myeloid leukemia with eosinophilia ,de novo cases of acute myeloid leukemia,acute myeloid leukemia(AML),Acute myeloid leukemia,pediatric acute myelogenous leukemia,Acute myelocytic leukemia(AML),AML(acute myeloid leukemia),leukemia,severalleukaemia,acute nonlymphoid leukemia,Primary granulocytic sarcoma (GS),core binding factor [CBF] leukemias,myeloid leukemia,childhood acute myeloid leukemia (AML),Acute myelogenous leukemia,myelodysplastic syndromes (MDS),acute myelocitic leukemia (AML),granulocytic sarcoma,acute myelogenous leukemia,Acute myeloid leukemia (AML),acute promyelocytic leukemia (APL),acute myeloid leukemia (AML) ,acute myeloid leukaemia(AML),acute promyelocytic leukemia(APL),acute myelogenous leukemia (AML),AML,nonHodgkin's lymphoma (NHL),acute myelogenous leukemia ,Acute leukemia,acute myelogenous leukemia with maturation (AMLM2),acute myeloblastic leukemia,acute myelogenous leukemia(AML), minimal residual diseases (MRD),acute myelogenous leukaemia,acute myeloblastic leukaemia,acute myelogenous leukemia(AML),spinal granulocytic sarcoma,Myelomastocytic leukemia,acute myeloid leukaemia (AML),acute myeloid leukaemia,acute leukemia},{Klijn_CCL:Lymphoid=1},RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,RUNX1T1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RUNX1_translocation_partner_1,chr8:92967203-93115514:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.99	1.5522	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--RUNX1T1	1	127	RUNX1	29506	chr21:36228596:-	RUNX1T1	55630	chr8:93029591:-	ONLY_REF_SPLICE	YES	256	0	0.33	1	0.0117	1.4822	Mitelman{Heart=2,Skin=11,ALL=2,AML=17},YOSHIHARA_TCGA_num_samples[LAML:7],chimerdb_omim:{acutemyelogenousleukemia},chimerdb_omim:{leukemia},chimerdb_pubmed{acute myeloid leukemia (AML), acute myelogenous leukemia,Promyelocytic leukemia (PML),acute myelocytic leukaemia,Acute myeloid leukaemia, M2 type, with dysplastic features and Auer rods, good prognosis,acute myeloid leukemia,acute myeloid leukemia, chronic myelogenous leukemia,Acute myeloid leukaemia (AML),acute myeloid leukemia with eosinophilia ,de novo cases of acute myeloid leukemia,acute myeloid leukemia(AML),Acute myeloid leukemia,pediatric acute myelogenous leukemia,Acute myelocytic leukemia(AML),AML(acute myeloid leukemia),leukemia,severalleukaemia,acute nonlymphoid leukemia,Primary granulocytic sarcoma (GS),core binding factor [CBF] leukemias,myeloid leukemia,childhood acute myeloid leukemia (AML),Acute myelogenous leukemia,myelodysplastic syndromes (MDS),acute myelocitic leukemia (AML),granulocytic sarcoma,acute myelogenous leukemia,Acute myeloid leukemia (AML),acute promyelocytic leukemia (APL),acute myeloid leukemia (AML) ,acute myeloid leukaemia(AML),acute promyelocytic leukemia(APL),acute myelogenous leukemia (AML),AML,nonHodgkin's lymphoma (NHL),acute myelogenous leukemia ,Acute leukemia,acute myelogenous leukemia with maturation (AMLM2),acute myeloblastic leukemia,acute myelogenous leukemia(AML), minimal residual diseases (MRD),acute myelogenous leukaemia,acute myeloblastic leukaemia,acute myelogenous leukemia(AML),spinal granulocytic sarcoma,Myelomastocytic leukemia,acute myeloid leukaemia (AML),acute myeloid leukaemia,acute leukemia},{Klijn_CCL:Lymphoid=1},RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,RUNX1T1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RUNX1_translocation_partner_1,chr8:92967203-93115514:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	1.4939	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	5	111	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	5570	chr1:149591759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0584	1.2955	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.3539	TRUE	361	258	24	38	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND1	27	0	MT-ND5	2455	chrM:13791:+	MT-ND1	6026	chrM:3520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3151	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[8075],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3151	FALSE	7	3	0	4	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAB3--MPP1	19	24	GAB3	5132	chrX:153940504:-	MPP1	22305	chrX:154020560:-	ONLY_REF_SPLICE	YES	26	318	0.62	0.12	0.2217	0.2801	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[27101],GAB3->GRB2_associated_binding_protein_3,chrX:153903529-153979858:-,MPP1->Oncogene{Bushman},chrX:154006959-154049282:-,membrane_palmitoylated_protein_1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.62	0.5018	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DIS3L--ZWILCH	3	71	DIS3L	12187	chr15:66615272:+	ZWILCH	38321	chr15:66829506:+	ONLY_REF_SPLICE	YES	82	81	0.47	0.48	0.035	0.8286	DIS3L->DIS3_like_exosome_3'-5'_exoribonuclease,chr15:66585555-66626236:+,ZWILCH->chr15:66797297-66842115:+,zwilch_kinetochore_protein	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.48	0.8636	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	14	21	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	82	50	0.3	0.41	0.1634	0.2451	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.41	0.4085	TRUE	267	562	48	632	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAT5B--STAT3	14	9	STAT5B	1460	chr17:40428266:-	STAT3	35031	chr17:40481794:-	ONLY_REF_SPLICE	YES	2	244	0.92	0.09	0.1634	0.105	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[36617],STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B,STAT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:40465342-40540586:-,signal_transducer_and_activator_of_transcription_3	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.92	0.2684	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM27--TNK2-AS1	11	18	RBM27	2394	chr5:145598666:+	TNK2-AS1	30668	chr3:195635243:+	INCL_NON_REF_SPLICE	YES	176	9	0.14	0.76	0.1284	0.2101	RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+,TNK2-AS1->TNK2_antisense_RNA_1,chr3:195634947-195638128:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.76	0.3385	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WBP2--TAF12	10	16	WBP2	4637	chr17:73847649:-	TAF12	15563	chr1:28948677:-	ONLY_REF_SPLICE	YES	778	5	0.03	0.84	0.1167	0.1867	WBP2->WW_domain_binding_protein_2,chr17:73841780-73852588:-,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.84	0.3034	TRUE	0	0	0	1	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTK2--TRAPPC9	11	10	PTK2	19872	chr8:141828376:-	TRAPPC9	67249	chr8:141461482:-	ONLY_REF_SPLICE	YES	85	21	0.2	0.5	0.1284	0.1167	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.5	0.2451	TRUE	0	1	0	1	1	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP1M1--TPM4	12	5	AP1M1	1491	chr19:16308879:+	TPM4	32193	chr19:16212074:+	ONLY_REF_SPLICE	YES	29	1196	0.37	0.01	0.14	0.0584	LOCAL_REARRANGEMENT:+:[94576],AP1M1->adaptor_related_protein_complex_1_mu_1_subunit,chr19:16308389-16346160:+,TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.37	0.1984	TRUE	0	0	0	1	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAB3--MPP1	6	27	GAB3	5132	chrX:153940504:-	MPP1	19888	chrX:154033102:-	ONLY_REF_SPLICE	YES	26	320	0.56	0.09	0.07	0.3151	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[27101],GAB3->GRB2_associated_binding_protein_3,chrX:153903529-153979858:-,MPP1->Oncogene{Bushman},chrX:154006959-154049282:-,membrane_palmitoylated_protein_1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.56	0.3851	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WBP2--TAF12	7	23	WBP2	6141	chr17:73845685:-	TAF12	15563	chr1:28948677:-	ONLY_REF_SPLICE	YES	462	5	0.06	0.86	0.0817	0.2684	WBP2->WW_domain_binding_protein_2,chr17:73841780-73852588:-,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.86	0.3501	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	11	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	50	2371	0.19	0.01	0.1284	0.0117	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.19	0.1401	TRUE	0	0	0	434	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAQR5--GLCE	5	24	PAQR5	4834	chr15:69652470:+	GLCE	21384	chr15:69486775:+	ONLY_REF_SPLICE	YES	34	21	0.46	0.58	0.0584	0.2801	LOCAL_REARRANGEMENT:+:[26730],PAQR5->chr15:69591286-69700119:+,progestin_and_adipoQ_receptor_family_member_5,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.58	0.3385	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD6--RP11-321F6.1	9	7	SMAD6	6130	chr15:67008836:+	RP11-321F6.1	13233	chr15:66956700:+	ONLY_REF_SPLICE	YES	62	0	0.21	1	0.105	0.0817	LOCAL_REARRANGEMENT:+:[16434],SMAD6->SMAD_family_member_6,chr15:66994566-67074338:+,RP11-321F6.1->chr15:66874528-66978132:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.1867	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSNK2A1--PRKAR2A	9	6	CSNK2A1	18031	chr20:464370:-	PRKAR2A	34390	chr3:48789670:-	INCL_NON_REF_SPLICE	YES	139	69	0.1	0.18	0.105	0.07	CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-,PRKAR2A->chr3:48782030-48885279:-,protein_kinase_cAMP-dependent_type_II_regulatory_subunit_alpha	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.18	0.175	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAQR5--GLCE	5	22	PAQR5	4834	chr15:69652470:+	GLCE	22474	chr15:69488754:+	ONLY_REF_SPLICE	YES	34	22	0.44	0.55	0.0584	0.2568	LOCAL_REARRANGEMENT:+:[26730],PAQR5->chr15:69591286-69700119:+,progestin_and_adipoQ_receptor_family_member_5,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.55	0.3152	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAB3--MPP1	8	5	GAB3	4921	chrX:153940715:-	MPP1	22305	chrX:154020560:-	INCL_NON_REF_SPLICE	YES	40	318	0.25	0.04	0.0934	0.0584	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[27101],GAB3->GRB2_associated_binding_protein_3,chrX:153903529-153979858:-,MPP1->Oncogene{Bushman},chrX:154006959-154049282:-,membrane_palmitoylated_protein_1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.25	0.1518	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PITPNM2--SBNO1	9	1	PITPNM2	2351	chr12:123594932:-	SBNO1	41758	chr12:123815922:-	ONLY_REF_SPLICE	YES	7	171	0.59	0.06	0.105	0.0117	PITPNM2->chr12:123468027-123634562:-,phosphatidylinositol_transfer_protein_membrane_associated_2,SBNO1->Oncogene{Bushman},chr12:123773656-123849390:-,strawberry_notch_homolog_1_(Drosophila)	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.59	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	20	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	81	51	0.23	0.32	0.0467	0.2334	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.32	0.2801	TRUE	267	562	48	632	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAQR5--GLCE	5	16	PAQR5	4834	chr15:69652470:+	GLCE	24049	chr15:69502655:+	ONLY_REF_SPLICE	YES	34	16	0.38	0.57	0.0584	0.1867	LOCAL_REARRANGEMENT:+:[26730],PAQR5->chr15:69591286-69700119:+,progestin_and_adipoQ_receptor_family_member_5,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.57	0.2451	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKAR2A--CSNK2A1	8	2	PRKAR2A	1512	chr3:48884768:-	CSNK2A1	33650	chr20:469422:-	ONLY_REF_SPLICE	YES	29	381	0.26	0.03	0.0934	0.0233	PRKAR2A->chr3:48782030-48885279:-,protein_kinase_cAMP-dependent_type_II_regulatory_subunit_alpha,CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.26	0.1167	TRUE	0	0	0	1	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCBP2--MTND2P28	7	3	PCBP2	11799	chr12:53856307:+	MTND2P28	25731	chr1:565031:+	INCL_NON_REF_SPLICE	YES	2752	0	0	1	0.0817	0.035	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1167	TRUE	0	0	0	9	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	6	2	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	5	2111	0.62	0	0.07	0.0233	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.62	0.0933	FALSE	26	124	4	93	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAQR5--GLCE	3	14	PAQR5	3663	chr15:69629840:+	GLCE	21384	chr15:69486775:+	ONLY_REF_SPLICE	YES	39	21	0.3	0.45	0.035	0.1634	LOCAL_REARRANGEMENT:+:[26730],PAQR5->chr15:69591286-69700119:+,progestin_and_adipoQ_receptor_family_member_5,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.45	0.1984	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TY	6	0	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.07	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.07	FALSE	13	214	14	42	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TY	6	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.07	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.07	FALSE	13	214	14	42	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GDPD5--XRRA1	4	6	GDPD5	15891	chr11:75167802:-	XRRA1	55194	chr11:74559507:-	ONLY_REF_SPLICE	YES	6	20	0.62	0.33	0.0467	0.07	GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5,XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.62	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSNK2A1--PRKAR2A	4	5	CSNK2A1	17829	chr20:464572:-	PRKAR2A	34909	chr3:48789151:-	INCL_NON_REF_SPLICE	YES	226	86	0.04	0.09	0.0467	0.0584	CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-,PRKAR2A->chr3:48782030-48885279:-,protein_kinase_cAMP-dependent_type_II_regulatory_subunit_alpha	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.09	0.1051	TRUE	0	0	0	1	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GDPD5--XRRA1	3	8	GDPD5	15891	chr11:75167802:-	XRRA1	53860	chr11:74562248:-	ONLY_REF_SPLICE	YES	6	16	0.65	0.41	0.035	0.0934	GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5,XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.65	0.1284	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD6--RP11-321F6.1	5	0	SMAD6	6130	chr15:67008836:+	RP11-321F6.1	15438	chr15:66976337:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0584	0	LOCAL_REARRANGEMENT:+:[16434],SMAD6->SMAD_family_member_6,chr15:66994566-67074338:+,RP11-321F6.1->chr15:66874528-66978132:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WTAPP1--RUVBL1	5	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0584	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0584	TRUE	9	252	6	66	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GDPD5--XRRA1	2	10	GDPD5	15891	chr11:75167802:-	XRRA1	52981	chr11:74563127:-	ONLY_REF_SPLICE	YES	6	13	0.67	0.48	0.0233	0.1167	GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5,XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.67	0.14	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAQR5--GLCE	2	10	PAQR5	3663	chr15:69629840:+	GLCE	24049	chr15:69502655:+	ONLY_REF_SPLICE	NO	39	16	0.24	0.43	0.0233	0.1167	LOCAL_REARRANGEMENT:+:[26730],PAQR5->chr15:69591286-69700119:+,progestin_and_adipoQ_receptor_family_member_5,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.43	0.14	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAB3--MPP1	4	1	GAB3	1630	chrX:153979229:-	MPP1	22305	chrX:154020560:-	ONLY_REF_SPLICE	YES	18	318	0.22	0.02	0.0467	0.0117	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[27101],GAB3->GRB2_associated_binding_protein_3,chrX:153903529-153979858:-,MPP1->Oncogene{Bushman},chrX:154006959-154049282:-,membrane_palmitoylated_protein_1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.22	0.0584	TRUE	0	0	0	1	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	51	2136	0.09	0	0.0467	0.0117	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0584	FALSE	0	0	0	434	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	51	2144	0.09	0	0.0467	0.0117	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0584	FALSE	0	0	0	434	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	51	2161	0.09	0	0.0467	0.0117	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0584	FALSE	0	0	0	434	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAQR5--GLCE	1	13	PAQR5	3663	chr15:69629840:+	GLCE	22474	chr15:69488754:+	ONLY_REF_SPLICE	YES	39	22	0.26	0.39	0.0117	0.1517	LOCAL_REARRANGEMENT:+:[26730],PAQR5->chr15:69591286-69700119:+,progestin_and_adipoQ_receptor_family_member_5,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.39	0.1634	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	4	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0467	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0467	TRUE	0	5	1	24	1	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	2	0.7	0.78	0.035	0.0467	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.78	0.0817	FALSE	515	4851	409	746	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAB3--MPP1	3	2	GAB3	4154	chrX:153941482:-	MPP1	22305	chrX:154020560:-	ONLY_REF_SPLICE	NO	43	318	0.1	0.02	0.035	0.0233	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[27101],GAB3->GRB2_associated_binding_protein_3,chrX:153903529-153979858:-,MPP1->Oncogene{Bushman},chrX:154006959-154049282:-,membrane_palmitoylated_protein_1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.1	0.0583	TRUE	0	0	0	1	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND1	3	2	MT-ND5	2303	chrM:13639:+	MT-ND1	5828	chrM:3322:+	INCL_NON_REF_SPLICE	YES	3202	0	0	1	0.035	0.0233	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[8075],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0583	FALSE	7	3	0	4	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.035	0.0233	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0583	FALSE	292	1546	117	613	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCBP2--MTND2P28	3	2	PCBP2	11844	chr12:53856352:+	MTND2P28	25777	chr1:565077:+	INCL_NON_REF_SPLICE	YES	2747	0	0	1	0.035	0.0233	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0583	FALSE	0	0	0	9	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD6--RP11-321F6.1	3	2	SMAD6	6130	chr15:67008836:+	RP11-321F6.1	14324	chr15:66960679:+	ONLY_REF_SPLICE	YES	62	0	0.07	1	0.035	0.0233	LOCAL_REARRANGEMENT:+:[16434],SMAD6->SMAD_family_member_6,chr15:66994566-67074338:+,RP11-321F6.1->chr15:66874528-66978132:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAT5B--STAT3	1	10	STAT5B	1460	chr17:40428266:-	STAT3	26161	chr17:40500557:-	ONLY_REF_SPLICE	YES	2	401	0.85	0.03	0.0117	0.1167	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[36617],STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B,STAT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:40465342-40540586:-,signal_transducer_and_activator_of_transcription_3	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.85	0.1284	TRUE	0	0	0	1	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	APP--MT-ND2	3	1	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	1817	6707	0	0	0.035	0.0117	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0467	FALSE	0	1	0	51	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	51	2319	0.07	0	0.035	0.0117	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0467	FALSE	0	0	0	434	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC004791.2--TPM4	3	0	AC004791.2	1089	chr19:15975626:-	TPM4	13759	chr19:16192723:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.035	0	AC004791.2->chr19:15962803-15975714:-,TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--EGFL7	3	0	MIR142	1039	chr17:56409831:-	EGFL7	13933	chr9:139565402:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	MIR142->chr17:56408245-56409869:-,microRNA_142,EGFL7->EGF_like_domain_multiple_7,chr9:139553308-139567130:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.035	TRUE	0	0	0	2	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	3	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.035	FALSE	351	233	23	137	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIO--CTD-2353F22.1	3	0	TRIO	1181	chr5:14143991:+	CTD-2353F22.1	78912	chr5:36668813:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.035	0	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,CTD-2353F22.1->chr5:36666316-36725297:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0117	0.07	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	1	0.0817	FALSE	407	2205	196	549	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.19	1	0.0117	0.0584	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.0701	FALSE	164	806	69	479	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.86	0.75	0.0117	0.0584	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.86	0.0701	FALSE	467	2173	244	435	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAT5B--STAT3	1	5	STAT5B	1460	chr17:40428266:-	STAT3	36398	chr17:40478217:-	ONLY_REF_SPLICE	YES	2	656	0.75	0.01	0.0117	0.0584	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:-:[36617],STAT5B->Oncogene{Bushman},chr17:40351186-40428725:-,signal_transducer_and_activator_of_transcription_5B,STAT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:40465342-40540586:-,signal_transducer_and_activator_of_transcription_3	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.75	0.0701	FALSE	0	0	0	1	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC024560.3--BAZ2B	2	0	AC024560.3	7623	chr3:197342435:-	BAZ2B	43421	chr2:160285771:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	AC024560.3->chr3:197305084-197354777:-,BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DKC1--MPP1	2	0	DKC1	1226	chrX:153991256:+	MPP1	20118	chrX:154020560:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	LOCAL_INVERSION:+:-:[995],DKC1->Oncogene{Bushman},chrX:153991031-154005964:+,dyskerin_pseudouridine_synthase_1,MPP1->Oncogene{Bushman},chrX:154006959-154049282:-,membrane_palmitoylated_protein_1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF4G2--THOC5	2	0	EIF4G2	4204	chr11:10827454:-	THOC5	25487	chr22:29932727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2,THOC5->Oncogene{Bushman},THO_complex_5,chr22:29901868-29951205:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAB3--MPP1	1	4	GAB3	5132	chrX:153940504:-	MPP1	25637	chrX:154014675:-	ONLY_REF_SPLICE	YES	26	337	0.16	0.01	0.0117	0.0467	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[27101],GAB3->GRB2_associated_binding_protein_3,chrX:153903529-153979858:-,MPP1->Oncogene{Bushman},chrX:154006959-154049282:-,membrane_palmitoylated_protein_1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.16	0.0584	FALSE	0	0	0	1	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NHP2L1--XRCC6	2	0	NHP2L1	2186	chr22:42084798:-	XRCC6	17752	chr22:42042900:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	LOCAL_INVERSION:-:+:[9890],NHP2L1->chr22:42069934-42086508:-,XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	2	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	2	0	NOC4L	4659	chr12:132632651:+	FBRSL1	23658	chr12:133144067:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	16	9	0	6	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PISD--YWHAH	2	0	PISD	1289	chr22:32058130:-	YWHAH	24267	chr22:32352126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_v2:{count=2;pct=0.02%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Caudate_(basal_ganglia)=1},PISD->chr22:32014477-32058418:-,phosphatidylserine_decarboxylase,YWHAH->chr22:32340447-32353590:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_eta	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPIL1--C6orf89	2	0	PPIL1	1308	chr6:36842493:-	C6orf89	16117	chr6:36867202:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	NEIGHBORS_OVERLAP:-:+:[3154],PPIL1->chr6:36822603-36842800:-,peptidylprolyl_isomerase_like_1,C6orf89->chr6:36839646-36896740:+,chromosome_6_open_reading_frame_89	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	FALSE	0	0	0	1	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--SRSF1	2	0	PROSC	2996	chr8:37623873:+	SRSF1	14701	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Breast=[count:2=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=3,Brain_-_Hippocampus=1,Thyroid=1,Adipose_-_Subcutaneous=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	6	2	0	9	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSTK--MXI1	2	0	PSTK	1188	chr10:124714084:+	MXI1	20959	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	PSTK->chr10:124713897-124757029:+,phosphoseryl-tRNA_kinase,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUB1--MCCC2	2	0	SUB1	7940	chr5:32591791:+	MCCC2	35215	chr5:70942038:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	SUB1->SUB1_homolog,_transcriptional_regulator,chr5:32531739-32604185:+,MCCC2->chr5:70883115-70954531:+,methylcrotonoyl-CoA_carboxylase_2	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBL5--GNL3	2	0	UBL5	1498	chr19:9939065:+	GNL3	11985	chr3:52724961:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	UBL5->chr19:9938568-9940791:+,ubiquitin_like_5,GNL3->G_protein_nucleolar_3,chr3:52715172-52728508:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAG--SRCRB4D	1	2	YWHAG	1310	chr7:75988039:-	SRCRB4D	15265	chr7:76024647:-	ONLY_REF_SPLICE	YES	838	0	0	1	0.0117	0.0233	LOCAL_REARRANGEMENT:-:[30303],YWHAG->chr7:75956116-75988348:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_gamma,SRCRB4D->chr7:76018651-76039012:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.035	FALSE	0	0	0	1	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--GRB2	1	1	BCR	10786	chr22:23603727:+	GRB2	45791	chr17:73328878:-	ONLY_REF_SPLICE	YES	206	796	0.01	0	0.0117	0.0117	BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,GRB2->Oncogene{Bushman},chr17:73314157-73401790:-,growth_factor_receptor_bound_protein_2	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COX11--AQR	1	1	COX11	3787	chr17:53040667:-	AQR	36035	chr15:35193064:-	ONLY_REF_SPLICE	NO	262	131	0.01	0.02	0.0117	0.0117	COX11->COX11_cytochrome_c_oxidase_copper_chaperone,chr17:53029263-53046146:-,AQR->aquarius_intron-binding_spliceosomal_factor,chr15:35147732-35262040:-	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ECI2--PMPCA	1	1	ECI2	4211	chr6:4130606:-	PMPCA	19729	chr9:139311403:+	ONLY_REF_SPLICE	YES	522	621	0	0	0.0117	0.0117	ECI2->chr6:4115923-4135831:-,enoyl-CoA_delta_isomerase_2,PMPCA->chr9:139305110-139318213:+,peptidase,_mitochondrial_processing_alpha_subunit	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM189A1--INPPL1	1	1	FAM189A1	4508	chr15:29673979:-	INPPL1	21676	chr11:71935824:+	ONLY_REF_SPLICE	YES	45	1	0.04	0.67	0.0117	0.0117	FAM189A1->chr15:29412457-29862927:-,family_with_sequence_similarity_189_member_A1,INPPL1->Oncogene{Bushman},chr11:71934745-71950149:+,inositol_polyphosphate_phosphatase_like_1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.67	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOP58--CANX	1	1	NOP58	1271	chr2:203130709:+	CANX	29991	chr5:179136874:+	ONLY_REF_SPLICE	YES	795	1516	0	0	0.0117	0.0117	NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+,CANX->calnexin,chr5:179105629-179157926:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP2R5C--MARK3	1	1	PPP2R5C	10176	chr14:102276373:+	MARK3	45024	chr14:103871413:+	ONLY_REF_SPLICE	YES	565	65	0	0.03	0.0117	0.0117	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma,MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM6--RHOA	1	1	RBM6	3185	chr3:50000118:+	RHOA	37115	chr3:49413024:-	ONLY_REF_SPLICE	NO	423	3300	0	0	0.0117	0.0117	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Lung=1,Pituitary=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0234	FALSE	0	4	1	6	1	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF126--BSG	1	1	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	90	742	0.02	0	0.0117	0.0117	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0234	FALSE	0	2	0	12	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCFD2--FIP1L1	1	1	SCFD2	5445	chr4:54139993:-	FIP1L1	22651	chr4:54265897:+	ONLY_REF_SPLICE	YES	274	921	0.01	0	0.0117	0.0117	GTEx_FI:{Pancreas=[count:1=pct:0.6],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=6;pct=0.07%;dist=Ovary=1,Prostate=1,Liver=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[11568],SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0234	FALSE	0	1	0	1	0	FALSE	ACH-001656
SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTLL12--TSPO	1	1	TTLL12	10151	chr22:43567825:-	TSPO	21166	chr22:43557058:+	ONLY_REF_SPLICE	YES	270	1612	0.01	0	0.0117	0.0117	LOCAL_INVERSION:-:+:[3380],TTLL12->chr22:43562628-43583139:-,tubulin_tyrosine_ligase_like_12,TSPO->chr22:43547520-43559248:+,translocator_protein	SKNO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-001656
HS600T_FIBROBLAST	COL1A1--FN1	318	86	COL1A1	12966	chr17:48266809:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	16930	7674	0.02	0.05	3.9767	1.0755	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS600T_FIBROBLAST	0.02	0.05	5.0522	TRUE	0	0	0	17	0	FALSE	ACH-000240
HS600T_FIBROBLAST	TIMM23B--LINC00843	116	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4506	0.3752	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS600T_FIBROBLAST	1	1	1.8258	TRUE	508	994	45	981	0	FALSE	ACH-000240
HS600T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	112	40	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	0	30	1	0.84	1.4006	0.5002	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS600T_FIBROBLAST	0.84	1	1.9008	FALSE	65	26	15	9	0	FALSE	ACH-000240
HS600T_FIBROBLAST	COL1A1--FN1	92	21	COL1A1	5208	chr17:48274567:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	NO	12983	7674	0.01	0.01	1.1505	0.2626	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS600T_FIBROBLAST	0.01	0.01	1.4131	FALSE	0	0	0	9	0	FALSE	ACH-000240
HS600T_FIBROBLAST	TIMM23--RP11-464F9.1	74	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	183	3	0.3	0.96	0.9254	0.0375	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS600T_FIBROBLAST	0.3	0.96	0.9629	TRUE	519	3926	326	965	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-ND6--MT-ND5	57	0	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7128	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS600T_FIBROBLAST	1	1	0.7128	FALSE	101	855	57	72	0	FALSE	ACH-000240
HS600T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	47	35	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	0	35	1	0.7	0.5878	0.4377	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS600T_FIBROBLAST	0.7	1	1.0255	FALSE	65	26	15	9	0	FALSE	ACH-000240
HS600T_FIBROBLAST	TMPO--PAM	43	12	TMPO	9544	chr12:98931350:+	PAM	31428	chr5:102237060:+	ONLY_REF_SPLICE	YES	53	196	0.51	0.22	0.5377	0.1501	TMPO->chr12:98909290-98944157:+,thymopoietin,PAM->chr5:102089685-102366809:+,peptidylglycine_alpha-amidating_monooxygenase	HS600T_FIBROBLAST	0.22	0.51	0.6878	TRUE	0	0	0	1	0	TRUE	ACH-000240
HS600T_FIBROBLAST	COL1A1--FN1	4	103	COL1A1	13181	chr17:48266594:-	FN1	22263	chr2:216300758:-	INCL_NON_REF_SPLICE	NO	17850	2	0.01	0.98	0.05	1.2881	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS600T_FIBROBLAST	0.01	0.98	1.3381	FALSE	0	0	0	17	0	FALSE	ACH-000240
HS600T_FIBROBLAST	OR51S1--TP53I11	29	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3627	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HS600T_FIBROBLAST	1	1	0.3627	TRUE	402	216	10	229	0	FALSE	ACH-000240
HS600T_FIBROBLAST	COL1A1--FN1	3	95	COL1A1	13020	chr17:48266755:-	FN1	22275	chr2:216300746:-	INCL_NON_REF_SPLICE	YES	15781	2	0.01	0.98	0.0375	1.188	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS600T_FIBROBLAST	0.01	0.98	1.2255	TRUE	0	0	0	17	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-ND6--MT-TE	23	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2876	0.025	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS600T_FIBROBLAST	0.96	1	0.3126	FALSE	499	1288	110	792	0	FALSE	ACH-000240
HS600T_FIBROBLAST	COL1A1--FN1	5	57	COL1A1	8475	chr17:48271300:-	FN1	26912	chr2:216295516:-	INCL_NON_REF_SPLICE	YES	18746	9380	0	0.01	0.0625	0.7128	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS600T_FIBROBLAST	0	0.01	0.7753	TRUE	0	0	0	8	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-ND6--MT-TE	16	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	17	0	0.63	1	0.2001	0.1626	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS600T_FIBROBLAST	0.63	1	0.3627	FALSE	499	1288	110	792	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-TA--MT-TC	19	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2376	0.0125	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS600T_FIBROBLAST	1	1	0.2501	FALSE	462	80	0	856	0	FALSE	ACH-000240
HS600T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	17	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	7	1	0.77	0.96	0.2126	0.075	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS600T_FIBROBLAST	0.77	0.96	0.2876	FALSE	515	4851	409	746	0	FALSE	ACH-000240
HS600T_FIBROBLAST	COL1A1--FN1	4	52	COL1A1	7685	chr17:48272090:-	FN1	22275	chr2:216300746:-	INCL_NON_REF_SPLICE	YES	14460	2	0	0.97	0.05	0.6503	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS600T_FIBROBLAST	0	0.97	0.7003	TRUE	0	0	0	13	0	FALSE	ACH-000240
HS600T_FIBROBLAST	COL1A1--FN1	3	52	COL1A1	15650	chr17:48264125:-	FN1	58080	chr2:216243979:-	INCL_NON_REF_SPLICE	YES	12872	11246	0	0	0.0375	0.6503	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS600T_FIBROBLAST	0	0	0.6878	TRUE	0	0	0	18	0	FALSE	ACH-000240
HS600T_FIBROBLAST	COL1A2--COL6A1	16	0	COL1A2	7216	chr7:94034058:+	COL6A1	54424	chr21:47424586:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2001	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS600T_FIBROBLAST	1	1	0.2001	TRUE	0	0	0	1	0	TRUE	ACH-000240
HS600T_FIBROBLAST	FBLN2--MT-CO1	15	1	FBLN2	10496	chr3:13655634:+	MT-CO1	26175	chrM:5916:+	INCL_NON_REF_SPLICE	YES	1047	0	0.02	1	0.1876	0.0125	FBLN2->chr3:13573824-13679922:+,fibulin_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS600T_FIBROBLAST	0.02	1	0.2001	FALSE	0	0	0	7	0	FALSE	ACH-000240
HS600T_FIBROBLAST	COL1A1--FN1	3	44	COL1A1	15362	chr17:48264413:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	15471	12454	0	0	0.0375	0.5502	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS600T_FIBROBLAST	0	0	0.5877	TRUE	0	0	0	10	0	FALSE	ACH-000240
HS600T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	4	40	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	14416	chr11:121987031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.05	0.5002	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS600T_FIBROBLAST	1	1	0.5502	FALSE	8	1	0	5	0	FALSE	ACH-000240
HS600T_FIBROBLAST	RP11-680G10.1--GSE1	12	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	11	1	0.59	0.1501	0.05	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS600T_FIBROBLAST	0.59	1	0.2001	TRUE	465	1949	224	605	0	FALSE	ACH-000240
HS600T_FIBROBLAST	COL1A1--FN1	7	21	COL1A1	12383	chr17:48267392:-	FN1	61593	chr2:216239966:-	INCL_NON_REF_SPLICE	YES	17617	12657	0	0	0.0875	0.2626	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS600T_FIBROBLAST	0	0	0.3501	TRUE	0	0	0	13	0	FALSE	ACH-000240
HS600T_FIBROBLAST	RP11-680G10.1--GSE1	11	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	4	1	0.8	0.1376	0.0625	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS600T_FIBROBLAST	0.8	1	0.2001	TRUE	458	1351	185	561	0	FALSE	ACH-000240
HS600T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	10	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	7	1	0.73	0.95	0.1251	0.1125	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS600T_FIBROBLAST	0.73	0.95	0.2376	FALSE	407	2205	196	549	0	FALSE	ACH-000240
HS600T_FIBROBLAST	COL1A1--FN1	3	32	COL1A1	13456	chr17:48266319:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	15582	12454	0	0	0.0375	0.4002	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS600T_FIBROBLAST	0	0	0.4377	TRUE	0	0	0	16	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-ND6--MT-TE	10	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1251	0.0375	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS600T_FIBROBLAST	0.93	1	0.1626	FALSE	499	1288	110	792	0	FALSE	ACH-000240
HS600T_FIBROBLAST	COL1A1--FN1	4	23	COL1A1	12982	chr17:48266793:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	15979	12454	0	0	0.05	0.2876	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS600T_FIBROBLAST	0	0	0.3376	TRUE	0	0	0	17	0	FALSE	ACH-000240
HS600T_FIBROBLAST	COL1A1--FN1	5	18	COL1A1	7831	chr17:48271944:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	15164	12454	0	0	0.0625	0.2251	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS600T_FIBROBLAST	0	0	0.2876	TRUE	0	0	0	14	0	FALSE	ACH-000240
HS600T_FIBROBLAST	AP3S1--PGGT1B	8	5	AP3S1	8673	chr5:115238689:+	PGGT1B	23281	chr5:114566718:-	ONLY_REF_SPLICE	YES	244	12	0.05	0.52	0.1	0.0625	AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+,PGGT1B->chr5:114546527-114598569:-,protein_geranylgeranyltransferase_type_I_subunit_beta	HS600T_FIBROBLAST	0.05	0.52	0.1625	TRUE	0	0	0	1	0	TRUE	ACH-000240
HS600T_FIBROBLAST	MT-ND6--MT-TE	4	19	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	17	0	0.57	1	0.05	0.2376	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS600T_FIBROBLAST	0.57	1	0.2876	FALSE	499	1288	110	792	0	FALSE	ACH-000240
HS600T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	4	17	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	0	30	1	0.41	0.05	0.2126	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS600T_FIBROBLAST	0.41	1	0.2626	FALSE	40	10	5	8	0	FALSE	ACH-000240
HS600T_FIBROBLAST	RP4-565E6.1--HYDIN	7	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0875	0.0375	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS600T_FIBROBLAST	1	1	0.125	TRUE	456	1387	91	133	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-CO3--MT-ATP6	3	16	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0375	0.2001	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS600T_FIBROBLAST	0.95	1	0.2376	FALSE	189	492	56	216	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-ND6--MT-TE	4	12	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.05	0.1501	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS600T_FIBROBLAST	0.94	1	0.2001	FALSE	499	1288	110	792	0	FALSE	ACH-000240
HS600T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	3	14	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	0	35	1	0.33	0.0375	0.1751	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS600T_FIBROBLAST	0.33	1	0.2126	FALSE	40	10	5	8	0	FALSE	ACH-000240
HS600T_FIBROBLAST	IGFBP4--NPM1	6	1	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	3714	3	0	0.7	0.075	0.0125	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HS600T_FIBROBLAST	0	0.7	0.0875	FALSE	0	0	0	38	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-ND6--MT-ND5	6	1	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	2344	1	0	0.075	0.0125	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS600T_FIBROBLAST	0	1	0.0875	FALSE	101	855	57	72	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-ND6--MT-TE	4	9	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0.1125	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS600T_FIBROBLAST	1	1	0.1625	FALSE	499	1288	110	792	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-CO3--MT-ATP6	6	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.075	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS600T_FIBROBLAST	1	1	0.075	FALSE	189	492	56	216	0	FALSE	ACH-000240
HS600T_FIBROBLAST	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.075	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS600T_FIBROBLAST	1	1	0.075	FALSE	292	1546	117	613	0	FALSE	ACH-000240
HS600T_FIBROBLAST	AQPEP--AP3S1	5	2	AQPEP	17512	chr5:115350224:+	AP3S1	34484	chr5:115230784:+	ONLY_REF_SPLICE	YES	0	319	1	0.02	0.0625	0.025	LOCAL_REARRANGEMENT:+:[48373],AQPEP->chr5:115298151-115363316:+,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	HS600T_FIBROBLAST	0.02	1	0.0875	TRUE	0	0	0	1	0	FALSE	ACH-000240
HS600T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	4	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	1	0.77	0.91	0.05	0.075	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS600T_FIBROBLAST	0.77	0.91	0.125	FALSE	467	2173	244	435	0	FALSE	ACH-000240
HS600T_FIBROBLAST	C15orf57--CBX3	3	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	30	14	0.27	0.44	0.0375	0.1	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS600T_FIBROBLAST	0.27	0.44	0.1375	TRUE	267	562	48	632	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-ND6--MT-ND5	5	0	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS600T_FIBROBLAST	1	1	0.0625	FALSE	101	855	57	72	0	FALSE	ACH-000240
HS600T_FIBROBLAST	PRR16--CTD-2334D19.1	4	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	86	0	0.07	1	0.05	0.025	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS600T_FIBROBLAST	0.07	1	0.075	FALSE	56	216	12	147	0	FALSE	ACH-000240
HS600T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	7	0	0.63	1	0.025	0.1251	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS600T_FIBROBLAST	0.63	1	0.1501	FALSE	275	511	55	178	0	FALSE	ACH-000240
HS600T_FIBROBLAST	C15orf57--CBX3	3	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	27	14	0.23	0.36	0.0375	0.0625	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS600T_FIBROBLAST	0.23	0.36	0.1	TRUE	267	562	48	632	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-ND6--MT-ND5	4	1	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	2269	1	0	0.05	0.0125	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS600T_FIBROBLAST	0	1	0.0625	FALSE	101	855	57	72	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-TA--MT-TC	4	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0.0125	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS600T_FIBROBLAST	1	1	0.0625	FALSE	462	80	0	856	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS600T_FIBROBLAST	1	1	0.05	FALSE	499	1288	110	792	0	FALSE	ACH-000240
HS600T_FIBROBLAST	PRR16--CTD-2334D19.1	3	3	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	31	0	0.16	1	0.0375	0.0375	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS600T_FIBROBLAST	0.16	1	0.075	FALSE	21	45	1	60	0	FALSE	ACH-000240
HS600T_FIBROBLAST	COL1A2--COL6A1	3	2	COL1A2	27017	chr7:94054536:+	COL6A1	46128	chr21:47414099:+	INCL_NON_REF_SPLICE	YES	11582	2321	0	0	0.0375	0.025	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS600T_FIBROBLAST	0	0	0.0625	FALSE	0	0	0	1	0	FALSE	ACH-000240
HS600T_FIBROBLAST	IGFBP4--NPM1	3	1	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	3888	3	0	0.57	0.0375	0.0125	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HS600T_FIBROBLAST	0	0.57	0.05	FALSE	0	0	0	38	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-TA--MT-TC	3	1	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0.0125	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS600T_FIBROBLAST	1	1	0.05	FALSE	462	80	0	856	0	FALSE	ACH-000240
HS600T_FIBROBLAST	PGGT1B--WNT8A	3	1	PGGT1B	1161	chr5:114598409:-	WNT8A	16403	chr5:137420187:+	ONLY_REF_SPLICE	YES	35	0	0.1	1	0.0375	0.0125	PGGT1B->chr5:114546527-114598569:-,protein_geranylgeranyltransferase_type_I_subunit_beta,WNT8A->Wnt_family_member_8A,chr5:137419581-137428054:+	HS600T_FIBROBLAST	0.1	1	0.05	TRUE	0	0	0	1	0	TRUE	ACH-000240
HS600T_FIBROBLAST	BGN--TGFBI	3	0	BGN	2855	chrX:152770758:+	TGFBI	19207	chr5:135388611:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	BGN->Oncogene{Bushman},biglycan,chrX:152760397-152775012:+,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS600T_FIBROBLAST	1	1	0.0375	TRUE	0	0	0	2	0	TRUE	ACH-000240
HS600T_FIBROBLAST	MT-ND6--MT-ND5	3	0	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS600T_FIBROBLAST	1	1	0.0375	FALSE	101	855	57	72	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-ND6--MT-ND5	3	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS600T_FIBROBLAST	1	1	0.0375	FALSE	101	855	57	72	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS600T_FIBROBLAST	1	1	0.0375	FALSE	499	1288	110	792	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS600T_FIBROBLAST	1	1	0.0375	FALSE	499	1288	110	792	0	FALSE	ACH-000240
HS600T_FIBROBLAST	RP11-155G15.2--RP11-1E3.1	2	2	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0.025	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HS600T_FIBROBLAST	1	1	0.05	FALSE	46	201	11	112	0	FALSE	ACH-000240
HS600T_FIBROBLAST	MPRIP--FLCN	2	1	MPRIP	8693	chr17:17035015:+	FLCN	66688	chr17:17118630:-	ONLY_REF_SPLICE	YES	294	44	0.01	0.06	0.025	0.0125	NEIGHBORS_OVERLAP:+:-:[5467],MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,FLCN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:17115526-17140502:-,folliculin	HS600T_FIBROBLAST	0.01	0.06	0.0375	FALSE	0	0	0	1	0	FALSE	ACH-000240
HS600T_FIBROBLAST	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.21	1	0.025	0.0125	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS600T_FIBROBLAST	0.21	1	0.0375	FALSE	125	705	46	456	0	FALSE	ACH-000240
HS600T_FIBROBLAST	CCDC88A--RTN4	2	0	CCDC88A	8066	chr2:55615914:-	RTN4	65009	chr2:55201900:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	HS600T_FIBROBLAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000240
HS600T_FIBROBLAST	COPZ2--WDFY1	2	0	COPZ2	4435	chr17:46110052:-	WDFY1	18657	chr2:224763787:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	COPZ2->chr17:46103533-46115392:-,coatomer_protein_complex_subunit_zeta_2,WDFY1->WD_repeat_and_FYVE_domain_containing_1,chr2:224720433-224810104:-	HS600T_FIBROBLAST	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000240
HS600T_FIBROBLAST	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS600T_FIBROBLAST	1	1	0.025	TRUE	477	1352	189	275	0	FALSE	ACH-000240
HS600T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	1	4	RP11-820L6.1	6183	chr11:122162992:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	3	30	0.62	0.14	0.0125	0.05	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS600T_FIBROBLAST	0.14	0.62	0.0625	FALSE	43	23	12	6	0	FALSE	ACH-000240
HS600T_FIBROBLAST	XG--CHMP1A	2	0	XG	6807	chrX:2712644:+	CHMP1A	22126	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GTEx_v2:{count=7;pct=0.08%;dist=Cells_-_Transformed_fibroblasts=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},XG->Xg_blood_group,chrX:2670091-2734539:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HS600T_FIBROBLAST	1	1	0.025	TRUE	1	1	0	1	0	TRUE	ACH-000240
HS600T_FIBROBLAST	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.25	1	0.0125	0.0375	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS600T_FIBROBLAST	0.25	1	0.05	FALSE	164	806	69	479	0	FALSE	ACH-000240
HS600T_FIBROBLAST	C16orf45--TSKU	1	1	C16orf45	11744	chr16:15677095:+	TSKU	25590	chr11:76506653:+	ONLY_REF_SPLICE	YES	254	8	0.01	0.2	0.0125	0.0125	C16orf45->chr16:15528152-15718885:+,chromosome_16_open_reading_frame_45,TSKU->chr11:76493295-76509198:+,tsukushi,_small_leucine_rich_proteoglycan	HS600T_FIBROBLAST	0.01	0.2	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000240
HS600T_FIBROBLAST	COL1A2--COL6A1	1	1	COL1A2	8773	chr7:94035615:+	COL6A1	46110	chr21:47414081:+	ONLY_REF_SPLICE	NO	6990	2543	0	0	0.0125	0.0125	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS600T_FIBROBLAST	0	0	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000240
HS600T_FIBROBLAST	COL8A1--CMSS1	1	1	COL8A1	12080	chr3:99463865:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	311	69	0.01	0.03	0.0125	0.0125	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HS600T_FIBROBLAST	0.01	0.03	0.025	FALSE	4	4	0	17	0	FALSE	ACH-000240
HS600T_FIBROBLAST	FBLN2--FBN1	1	1	FBLN2	15558	chr3:13668079:+	FBN1	89100	chr15:48713003:-	ONLY_REF_SPLICE	YES	1117	2057	0	0	0.0125	0.0125	PROTCLUST,FBLN2->chr3:13573824-13679922:+,fibulin_2,FBN1->chr15:48700503-48938046:-,fibrillin_1	HS600T_FIBROBLAST	0	0	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000240
HS600T_FIBROBLAST	PGGT1B--WNT8A	1	1	PGGT1B	1161	chr5:114598409:-	WNT8A	16155	chr5:137419939:+	ONLY_REF_SPLICE	YES	35	0	0.05	1	0.0125	0.0125	PGGT1B->chr5:114546527-114598569:-,protein_geranylgeranyltransferase_type_I_subunit_beta,WNT8A->Wnt_family_member_8A,chr5:137419581-137428054:+	HS600T_FIBROBLAST	0.05	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000240
HS600T_FIBROBLAST	PRKD1--CTD-2251F13.1	1	1	PRKD1	1600	chr14:30660505:-	CTD-2251F13.1	38031	chr14:30449473:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0125	0.0125	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,CTD-2251F13.1->chr14:30421603-30766249:-	HS600T_FIBROBLAST	0.67	1	0.025	TRUE	0	1	0	5	1	TRUE	ACH-000240
HS600T_FIBROBLAST	PRKD1--CTD-2251F13.1	1	1	PRKD1	2678	chr14:30516916:-	CTD-2251F13.1	38031	chr14:30449473:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0125	0.0125	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,CTD-2251F13.1->chr14:30421603-30766249:-	HS600T_FIBROBLAST	0.67	1	0.025	TRUE	0	0	0	2	0	TRUE	ACH-000240
HS600T_FIBROBLAST	TADA2B--SORCS2	1	1	TADA2B	2647	chr4:7045576:+	SORCS2	14461	chr4:7398015:+	ONLY_REF_SPLICE	YES	37	3	0.05	0.4	0.0125	0.0125	GTEx_FI:{Brain=[count:74=pct:11.2],Blood_Vessel=[count:12=pct:3.3],Nerve=[count:8=pct:4.7],Muscle=[count:6=pct:2.6],Pancreas=[count:5=pct:2.8],Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:3=pct:5.7],Breast=[count:2=pct:1.8],Skin=[count:2=pct:0.6],Thyroid=[count:2=pct:1.1],Colon=[count:2=pct:1.0],Uterus=[count:2=pct:4.7],Testis=[count:1=pct:1.0],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},TADA2B->chr4:7043626-7059679:+,transcriptional_adaptor_2B,SORCS2->chr4:7194265-7744554:+,sortilin_related_VPS10_domain_containing_receptor_2	HS600T_FIBROBLAST	0.05	0.4	0.025	TRUE	95	84	3	6	0	FALSE	ACH-000240
WM115_SKIN	UBE4B--CHRM3-AS2	79	36	UBE4B	32845	chr1:10231387:+	CHRM3-AS2	42832	chr1:239877564:-	ONLY_REF_SPLICE	YES	24	0	0.83	1	0.825	0.376	UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,CHRM3-AS2->CHRM3_antisense_RNA_2,chr1:239866684-239893765:-	WM115_SKIN	0.83	1	1.201	TRUE	0	0	0	2	0	TRUE	ACH-000304
WM115_SKIN	PLXDC1--TAF13	55	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5744	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	WM115_SKIN	1	1	0.5744	TRUE	7	10	0	216	0	FALSE	ACH-000304
WM115_SKIN	TIMM23B--LINC00843	44	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.4595	0.1462	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	WM115_SKIN	0.98	1	0.6057	TRUE	508	994	45	981	0	FALSE	ACH-000304
WM115_SKIN	NFKBIL1--PHF1	40	14	NFKBIL1	2570	chr6:31516216:+	PHF1	12750	chr6:33382254:+	ONLY_REF_SPLICE	YES	35	58	0.61	0.48	0.4177	0.1462	NFKBIL1->NFKB_inhibitor_like_1,chr6:31514647-31526606:+,PHF1->PHD_finger_protein_1,chr6:33378176-33384230:+	WM115_SKIN	0.48	0.61	0.5639	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	MT-TA--MT-TC	29	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3029	0.0313	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	WM115_SKIN	1	1	0.3342	FALSE	462	80	0	856	0	FALSE	ACH-000304
WM115_SKIN	ABL2--HIVEP3	17	11	ABL2	1444	chr1:179198376:-	HIVEP3	30525	chr1:42384195:-	ONLY_REF_SPLICE	YES	4	24	0.88	0.54	0.1775	0.1149	ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3	WM115_SKIN	0.54	0.88	0.2924	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	HPN-AS1--LGI4	19	1	HPN-AS1	1076	chr19:35597133:-	LGI4	12190	chr19:35622946:-	ONLY_REF_SPLICE	YES	44	142	0.31	0.12	0.1984	0.0104	GTEx_FI:{Nerve=[count:18=pct:10.6],Esophagus=[count:4=pct:1.0],Colon=[count:3=pct:1.6],Blood_Vessel=[count:1=pct:0.3],Prostate=[count:1=pct:1.6]},LOCAL_REARRANGEMENT:-:[18209],HPN-AS1->HPN_antisense_RNA_1,chr19:35549963-35597208:-,LGI4->chr19:35615417-35633355:-,leucine-rich_repeat_LGI_family_member_4	WM115_SKIN	0.12	0.31	0.2088	TRUE	26	21	0	3	0	FALSE	ACH-000304
WM115_SKIN	TIMM23--RP11-464F9.1	18	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	73	4	0.22	0.84	0.188	0.0313	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	WM115_SKIN	0.22	0.84	0.2193	TRUE	519	3926	326	965	0	FALSE	ACH-000304
WM115_SKIN	FOXJ3--PIGC	12	9	FOXJ3	11319	chr1:42664773:-	PIGC	28016	chr1:172384514:-	ONLY_REF_SPLICE	YES	19	7	0.53	0.75	0.1253	0.094	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,PIGC->chr1:172339329-172413230:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_C	WM115_SKIN	0.53	0.75	0.2193	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	MT-ND6--MT-TE	14	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1462	0.0104	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	WM115_SKIN	1	1	0.1566	FALSE	499	1288	110	792	0	FALSE	ACH-000304
WM115_SKIN	AC024084.1--AC009784.3	12	5	AC024084.1	3174	chr7:135743253:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1253	0.0522	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	WM115_SKIN	0.94	1	0.1775	FALSE	2	5	0	14	0	FALSE	ACH-000304
WM115_SKIN	STK3--RP11-410L14.2	11	4	STK3	18604	chr8:99718695:-	RP11-410L14.2	40104	chr8:100009194:-	ONLY_REF_SPLICE	YES	30	1	0.33	0.94	0.1149	0.0418	LOCAL_REARRANGEMENT:-:[53936],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,RP11-410L14.2->chr8:100008991-100025272:-	WM115_SKIN	0.33	0.94	0.1567	TRUE	0	1	0	1	1	TRUE	ACH-000304
WM115_SKIN	RP11-141M1.3--STARD13	10	7	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	54	0.85	0.24	0.1044	0.0731	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	WM115_SKIN	0.24	0.85	0.1775	FALSE	49	120	16	70	0	FALSE	ACH-000304
WM115_SKIN	FOXJ3--PIGC	7	16	FOXJ3	11319	chr1:42664773:-	PIGC	25640	chr1:172411970:-	ONLY_REF_SPLICE	YES	19	27	0.55	0.46	0.0731	0.1671	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,PIGC->chr1:172339329-172413230:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_C	WM115_SKIN	0.46	0.55	0.2402	TRUE	0	0	0	2	0	TRUE	ACH-000304
WM115_SKIN	RP11-444D3.1--SOX5	9	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	8	1	0.65	0.094	0.0627	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	WM115_SKIN	0.65	1	0.1567	TRUE	477	1352	189	275	0	FALSE	ACH-000304
WM115_SKIN	MT-ATP6--MT-CO1	9	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.094	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	WM115_SKIN	1	1	0.094	FALSE	183	104	9	328	0	FALSE	ACH-000304
WM115_SKIN	RP11-277A4.4--SPATA17	7	5	RP11-277A4.4	1138	chr1:32538938:-	SPATA17	12157	chr1:217856600:+	ONLY_REF_SPLICE	YES	0	2	1	0.86	0.0731	0.0522	RP11-277A4.4->chr1:32517892-32539075:-,SPATA17->chr1:217804666-218045038:+,spermatogenesis_associated_17	WM115_SKIN	0.86	1	0.1253	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	SAMD5--SASH1	8	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0835	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	WM115_SKIN	1	1	0.0835	TRUE	53	396	64	110	0	FALSE	ACH-000304
WM115_SKIN	ABL2--HIVEP3	6	6	ABL2	1444	chr1:179198376:-	HIVEP3	34759	chr1:42314760:-	ONLY_REF_SPLICE	YES	4	57	0.75	0.17	0.0627	0.0627	ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3	WM115_SKIN	0.17	0.75	0.1254	TRUE	0	0	0	2	0	TRUE	ACH-000304
WM115_SKIN	ST6GALNAC5--FAM102B	5	9	ST6GALNAC5	2302	chr1:77334427:+	FAM102B	15547	chr1:109143188:+	ONLY_REF_SPLICE	YES	16	2	0.47	0.88	0.0522	0.094	ST6GALNAC5->ST6_N-acetylgalactosaminide_alpha-2,6-sialyltransferase_5,chr1:77333126-77531396:+,FAM102B->chr1:109102711-109187522:+,family_with_sequence_similarity_102_member_B	WM115_SKIN	0.47	0.88	0.1462	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	AC024084.1--AC009784.3	6	4	AC024084.1	2134	chr7:135715781:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0627	0.0418	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	WM115_SKIN	1	1	0.1045	FALSE	1	6	0	14	0	FALSE	ACH-000304
WM115_SKIN	MT-ND6--MT-TE	6	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0.0104	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	WM115_SKIN	1	1	0.0731	FALSE	499	1288	110	792	0	FALSE	ACH-000304
WM115_SKIN	RP5-940J5.9--NAGA	6	0	RP5-940J5.9	1186	chr12:6647351:-	NAGA	7510	chr22:42463207:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	RP5-940J5.9->chr12:6646960-6647536:-,NAGA->N-acetylgalactosaminidase,_alpha-,chr22:42454358-42466846:-	WM115_SKIN	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	RP11-141M1.3--STARD13	4	7	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	4	54	0.73	0.17	0.0418	0.0731	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	WM115_SKIN	0.17	0.73	0.1149	FALSE	141	264	50	91	0	FALSE	ACH-000304
WM115_SKIN	FOXJ3--PIGC	3	8	FOXJ3	11319	chr1:42664773:-	PIGC	29097	chr1:172369056:-	ONLY_REF_SPLICE	YES	19	13	0.37	0.46	0.0313	0.0835	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,PIGC->chr1:172339329-172413230:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_C	WM115_SKIN	0.37	0.46	0.1148	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	FOXJ3--PIGC	1	16	FOXJ3	11319	chr1:42664773:-	PIGC	25617	chr1:172411993:-	ONLY_REF_SPLICE	NO	19	29	0.47	0.37	0.0104	0.1671	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,PIGC->chr1:172339329-172413230:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_C	WM115_SKIN	0.37	0.47	0.1775	TRUE	0	0	0	2	0	TRUE	ACH-000304
WM115_SKIN	MT-ND6--MT-TE	3	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0.0627	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	WM115_SKIN	1	1	0.094	FALSE	499	1288	110	792	0	FALSE	ACH-000304
WM115_SKIN	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.45	0.0418	0.0104	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	WM115_SKIN	0.45	1	0.0522	TRUE	458	1351	185	561	0	FALSE	ACH-000304
WM115_SKIN	MT-ATP6--MT-CO1	4	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	WM115_SKIN	1	1	0.0418	FALSE	183	104	9	328	0	FALSE	ACH-000304
WM115_SKIN	FOXJ3--PIGC	2	7	FOXJ3	11319	chr1:42664773:-	PIGC	31304	chr1:172363550:-	ONLY_REF_SPLICE	YES	19	17	0.32	0.35	0.0209	0.0731	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,PIGC->chr1:172339329-172413230:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_C	WM115_SKIN	0.32	0.35	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	ABL2--HIVEP3	2	6	ABL2	1444	chr1:179198376:-	HIVEP3	32721	chr1:42331286:-	ONLY_REF_SPLICE	YES	4	60	0.67	0.12	0.0209	0.0627	ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3	WM115_SKIN	0.12	0.67	0.0836	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	FAXDC2--PTMA	3	0	FAXDC2	1544	chr5:154238269:-	PTMA	24706	chr2:232576624:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	FAXDC2->chr5:154198051-154238812:-,fatty_acid_hydroxylase_domain_containing_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	WM115_SKIN	1	1	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	MT-ATP6--MT-CO1	3	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	WM115_SKIN	1	1	0.0313	FALSE	183	104	9	328	0	FALSE	ACH-000304
WM115_SKIN	MT-CO1--CPSF3L	3	0	MT-CO1	2017	chrM:6920:+	CPSF3L	15649	chr1:1249444:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,CPSF3L->chr1:1246965-1260071:-,cleavage_and_polyadenylation_specific_factor_3-like	WM115_SKIN	1	1	0.0313	FALSE	0	0	0	1	0	FALSE	ACH-000304
WM115_SKIN	PCDHGA1--MT-CO1	3	0	PCDHGA1	7984	chr5:140891877:+	MT-CO1	11774	chrM:6024:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	PCDHGA1->chr5:140710252-140892546:+,protocadherin_gamma_subfamily_A,_1,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	WM115_SKIN	1	1	0.0313	FALSE	0	0	0	1	0	FALSE	ACH-000304
WM115_SKIN	POLR2F--EIF4G2	3	0	POLR2F	12042	chr22:38382319:+	EIF4G2	29807	chr11:10822634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	POLR2F->chr22:38348614-38437922:+,polymerase_(RNA)_II_subunit_F,EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2	WM115_SKIN	1	1	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	TIMP1--MT-ATP8	3	0	TIMP1	2212	chrX:47442923:+	MT-ATP8	8138	chrM:8425:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	TIMP1->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_1,chrX:47441712-47446188:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	WM115_SKIN	1	1	0.0313	FALSE	0	0	0	2	0	FALSE	ACH-000304
WM115_SKIN	RP11-444D3.1--SOX5	1	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	10	1	0.41	0.0104	0.0627	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	WM115_SKIN	0.41	1	0.0731	TRUE	160	277	29	98	0	FALSE	ACH-000304
WM115_SKIN	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	20	1	0.13	0.0209	0.0104	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	WM115_SKIN	0.13	1	0.0313	TRUE	465	1949	224	605	0	FALSE	ACH-000304
WM115_SKIN	AC024084.1--AC009784.3	2	0	AC024084.1	2134	chr7:135715781:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	WM115_SKIN	1	1	0.0209	FALSE	0	3	0	12	0	FALSE	ACH-000304
WM115_SKIN	AC024084.1--AC009784.3	2	0	AC024084.1	1028	chr7:135710536:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	WM115_SKIN	1	1	0.0209	FALSE	0	0	0	3	0	FALSE	ACH-000304
WM115_SKIN	AP2A1--RPA1	2	0	AP2A1	1233	chr19:50270457:+	RPA1	24856	chr17:1756395:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	AP2A1->adaptor_related_protein_complex_2_alpha_1_subunit,chr19:50270225-50310370:+,RPA1->chr17:1732996-1803376:+,replication_protein_A1	WM115_SKIN	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	CORO1C--MKI67	2	0	CORO1C	5404	chr12:109094900:-	MKI67	25894	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	WM115_SKIN	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	MACF1--HNRNPU	2	0	MACF1	6636	chr1:39571389:+	HNRNPU	127251	chr1:245025836:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,HNRNPU->chr1:245014468-245027844:-,heterogeneous_nuclear_ribonucleoprotein_U_(scaffold_attachment_factor_A)	WM115_SKIN	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	PRPF19--FAM178B	2	0	PRPF19	1225	chr11:60673836:-	FAM178B	29481	chr2:97589320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	PRPF19->chr11:60658202-60674060:-,pre-mRNA_processing_factor_19,FAM178B->chr2:97541620-97684175:-,family_with_sequence_similarity_178_member_B	WM115_SKIN	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	RP11-141M1.3--DPYD	2	0	RP11-141M1.3	1091	chr13:34250815:-	DPYD	24224	chr1:98165858:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	RP11-141M1.3->chr13:33929343-34250905:-,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	WM115_SKIN	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	UBA3--PSMG2	2	0	UBA3	2786	chr3:69126949:-	PSMG2	24948	chr18:12718516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	UBA3->chr3:69103881-69129559:-,ubiquitin_like_modifier_activating_enzyme_3,PSMG2->chr18:12658737-12725739:+,proteasome_assembly_chaperone_2	WM115_SKIN	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	UBE2G1--EIF5B	2	0	UBE2G1	6978	chr17:4200012:-	EIF5B	26792	chr2:99995781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,EIF5B->chr2:99953816-100017789:+,eukaryotic_translation_initiation_factor_5B	WM115_SKIN	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	RP11-141M1.3--STARD13	1	3	RP11-141M1.3	8903	chr13:34013828:-	STARD13	26750	chr13:33716510:-	ONLY_REF_SPLICE	NO	4	39	0.5	0.09	0.0104	0.0313	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	WM115_SKIN	0.09	0.5	0.0417	FALSE	1	5	1	7	0	FALSE	ACH-000304
WM115_SKIN	RP11-277A4.4--SPATA17	1	2	RP11-277A4.4	1138	chr1:32538938:-	SPATA17	15502	chr1:217915317:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0104	0.0209	RP11-277A4.4->chr1:32517892-32539075:-,SPATA17->chr1:217804666-218045038:+,spermatogenesis_associated_17	WM115_SKIN	0.75	1	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	WARS2--ZNF687	1	2	WARS2	1117	chr1:119683178:-	ZNF687	16497	chr1:151258751:+	ONLY_REF_SPLICE	YES	9	6	0.25	0.33	0.0104	0.0209	WARS2->chr1:119573839-119683294:-,tryptophanyl_tRNA_synthetase_2,_mitochondrial,ZNF687->chr1:151254094-151264656:+,zinc_finger_protein_687	WM115_SKIN	0.25	0.33	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	ABL2--HIVEP3	1	1	ABL2	1444	chr1:179198376:-	HIVEP3	37664	chr1:42166666:-	ONLY_REF_SPLICE	YES	4	10	0.33	0.17	0.0104	0.0104	ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3	WM115_SKIN	0.17	0.33	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000304
WM115_SKIN	HPN-AS1--LGI4	1	1	HPN-AS1	1076	chr19:35597133:-	LGI4	12372	chr19:35622764:-	ONLY_REF_SPLICE	YES	44	136	0.04	0.01	0.0104	0.0104	GTEx_FI:{Nerve=[count:18=pct:10.6],Esophagus=[count:4=pct:1.0],Colon=[count:3=pct:1.6],Blood_Vessel=[count:1=pct:0.3],Prostate=[count:1=pct:1.6]},LOCAL_REARRANGEMENT:-:[18209],HPN-AS1->HPN_antisense_RNA_1,chr19:35549963-35597208:-,LGI4->chr19:35615417-35633355:-,leucine-rich_repeat_LGI_family_member_4	WM115_SKIN	0.01	0.04	0.0208	FALSE	26	21	0	3	0	FALSE	ACH-000304
WM115_SKIN	KIRREL3--GPNMB	1	1	KIRREL3	2916	chr11:126870351:-	GPNMB	39984	chr7:23306136:+	ONLY_REF_SPLICE	NO	18	445	0.1	0	0.0104	0.0104	KIRREL3->chr11:126293254-126873355:-,kin_of_IRRE_like_3_(Drosophila),GPNMB->Oncogene{Bushman},chr7:23275586-23314727:+,glycoprotein_nmb	WM115_SKIN	0	0.1	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000304
WM115_SKIN	NDUFA4--PHF14	1	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	NO	1048	43	0	0.04	0.0104	0.0104	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	WM115_SKIN	0	0.04	0.0208	FALSE	19	32	3	60	0	FALSE	ACH-000304
WM115_SKIN	NRAS--CSDE1	1	1	NRAS	1845	chr1:115258671:-	CSDE1	34139	chr1:115261366:-	ONLY_REF_SPLICE	YES	245	1119	0.01	0	0.0104	0.0104	LOCAL_REARRANGEMENT:-:[19],NRAS->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr1:115247090-115259515:-,neuroblastoma_RAS_viral_oncogene_homolog,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	WM115_SKIN	0	0.01	0.0208	FALSE	0	0	0	2	0	FALSE	ACH-000304
WM115_SKIN	PLXNB3--FAM50A	1	1	PLXNB3	2219	chrX:153031035:+	FAM50A	21276	chrX:153674763:+	ONLY_REF_SPLICE	YES	24	129	0.08	0.02	0.0104	0.0104	PLXNB3->chrX:153029651-153044801:+,plexin_B3,FAM50A->chrX:153672473-153679002:+,family_with_sequence_similarity_50_member_A	WM115_SKIN	0.02	0.08	0.0208	TRUE	0	0	0	2	0	FALSE	ACH-000304
WM115_SKIN	SPATA6--CAMTA1-IT1	1	1	SPATA6	14780	chr1:48850981:-	CAMTA1-IT1	27044	chr1:7430142:+	ONLY_REF_SPLICE	YES	10	0	0.17	1	0.0104	0.0104	SPATA6->chr1:48761044-48937845:-,spermatogenesis_associated_6,CAMTA1-IT1->CAMTA1_intronic_transcript_1,chr1:7429003-7430331:+	WM115_SKIN	0.17	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000304
639V_URINARY_TRACT	PTMA--PTMS	258	4	PTMA	6054	chr2:232576687:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	3318	607	0.07	0.3	2.9872	0.0463	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	639V_URINARY_TRACT	0.07	0.3	3.0335	TRUE	0	0	0	16	0	TRUE	ACH-000973
639V_URINARY_TRACT	TIMM23B--LINC00843	136	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5746	0.3473	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	639V_URINARY_TRACT	1	1	1.9219	TRUE	508	994	45	981	0	FALSE	ACH-000973
639V_URINARY_TRACT	GAREML--RAB10	85	14	GAREML	2383	chr2:26399353:+	RAB10	16958	chr2:26321531:+	ONLY_REF_SPLICE	YES	5	195	0.95	0.34	0.9841	0.1621	LOCAL_REARRANGEMENT:+:[35637],GAREML->chr2:26395960-26412532:+,RAB10->RAB10,_member_RAS_oncogene_family,chr2:26256976-26360323:+	639V_URINARY_TRACT	0.34	0.95	1.1462	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	NRP2--LINC00973	78	27	NRP2	19757	chr2:206617699:+	LINC00973	37271	chr3:98701308:+	ONLY_REF_SPLICE	YES	1	165	0.99	0.39	0.9031	0.3126	NRP2->chr2:206546714-206662857:+,neuropilin_2,LINC00973->chr3:98699902-98701940:+,long_intergenic_non-protein_coding_RNA_973	639V_URINARY_TRACT	0.39	0.99	1.2157	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	TIMM23--RP11-464F9.1	81	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	249	0	0.25	1	0.9378	0.0232	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	639V_URINARY_TRACT	0.25	1	0.961	TRUE	519	3926	326	965	0	FALSE	ACH-000973
639V_URINARY_TRACT	CLTC--VMP1	65	22	CLTC	1316	chr17:57697534:+	VMP1	54605	chr17:57917129:+	ONLY_REF_SPLICE	YES	110	124	0.44	0.41	0.7526	0.2547	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	639V_URINARY_TRACT	0.41	0.44	1.0073	FALSE	0	0	0	3	0	FALSE	ACH-000973
639V_URINARY_TRACT	HECTD1--ST7L	44	12	HECTD1	38475	chr14:31576773:-	ST7L	65609	chr1:113093315:-	ONLY_REF_SPLICE	YES	118	7	0.32	0.89	0.5094	0.1389	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,ST7L->chr1:113066140-113163447:-,suppression_of_tumorigenicity_7_like	639V_URINARY_TRACT	0.32	0.89	0.6483	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	ZNF654--HMGB2	46	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5326	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	639V_URINARY_TRACT	1	1	0.5326	TRUE	0	0	0	518	0	FALSE	ACH-000973
639V_URINARY_TRACT	HECTD1--ST7L	21	8	HECTD1	38475	chr14:31576773:-	ST7L	66702	chr1:113084712:-	ONLY_REF_SPLICE	YES	118	12	0.2	0.71	0.2431	0.0926	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,ST7L->chr1:113066140-113163447:-,suppression_of_tumorigenicity_7_like	639V_URINARY_TRACT	0.2	0.71	0.3357	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	DDX6--FOXR1	20	9	DDX6	8487	chr11:118650341:-	FOXR1	26488	chr11:118849492:+	ONLY_REF_SPLICE	YES	150	5	0.16	0.85	0.2316	0.1042	DDX6->DEAD-box_helicase_6,Oncogene{Bushman},chr11:118620034-118661858:-,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	639V_URINARY_TRACT	0.16	0.85	0.3358	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	MT-TA--MT-TC	21	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2431	0.0232	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	639V_URINARY_TRACT	1	1	0.2663	FALSE	462	80	0	856	0	FALSE	ACH-000973
639V_URINARY_TRACT	RP11-680G10.1--GSE1	17	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	27	1	0.4	0.1968	0.0116	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	639V_URINARY_TRACT	0.4	1	0.2084	TRUE	465	1949	224	605	0	FALSE	ACH-000973
639V_URINARY_TRACT	MT-ND6--MT-TE	15	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1737	0.0347	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	639V_URINARY_TRACT	1	1	0.2084	FALSE	499	1288	110	792	0	FALSE	ACH-000973
639V_URINARY_TRACT	AP000525.9--LA16c-60G3.6	12	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1389	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	639V_URINARY_TRACT	1	1	0.1389	TRUE	0	42	0	133	42	FALSE	ACH-000973
639V_URINARY_TRACT	C10orf76--MGEA5	10	4	C10orf76	1109	chr10:103815842:-	MGEA5	44581	chr10:103553755:-	ONLY_REF_SPLICE	YES	4	116	0.78	0.11	0.1158	0.0463	NEIGHBORS[26660],C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76,MGEA5->chr10:103544200-103578696:-,meningioma_expressed_antigen_5_(hyaluronidase)	639V_URINARY_TRACT	0.11	0.78	0.1621	FALSE	0	0	0	1	0	FALSE	ACH-000973
639V_URINARY_TRACT	HSP90AB1--MT-RNR2	11	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1274	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	639V_URINARY_TRACT	1	1	0.1274	FALSE	13	9	0	364	0	FALSE	ACH-000973
639V_URINARY_TRACT	NRP2--LINC00973	3	30	NRP2	19757	chr2:206617699:+	LINC00973	36138	chr3:98700098:+	INCL_NON_REF_SPLICE	YES	1	171	0.97	0.16	0.0347	0.3473	NRP2->chr2:206546714-206662857:+,neuropilin_2,LINC00973->chr3:98699902-98701940:+,long_intergenic_non-protein_coding_RNA_973	639V_URINARY_TRACT	0.16	0.97	0.382	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	C10orf76--MGEA5	9	3	C10orf76	1109	chr10:103815842:-	MGEA5	45636	chr10:103552700:-	ONLY_REF_SPLICE	YES	4	131	0.75	0.08	0.1042	0.0347	NEIGHBORS[26660],C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76,MGEA5->chr10:103544200-103578696:-,meningioma_expressed_antigen_5_(hyaluronidase)	639V_URINARY_TRACT	0.08	0.75	0.1389	FALSE	0	0	0	1	0	FALSE	ACH-000973
639V_URINARY_TRACT	ZNF540--SIPA1L3	8	3	ZNF540	1260	chr19:38042567:+	SIPA1L3	34912	chr19:38643480:+	ONLY_REF_SPLICE	YES	0	8	1	0.58	0.0926	0.0347	ZNF540->chr19:38042308-38104998:+,zinc_finger_protein_540,SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3	639V_URINARY_TRACT	0.58	1	0.1273	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	MT-TA--MT-TC	8	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0926	0.0232	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	639V_URINARY_TRACT	1	1	0.1158	FALSE	462	80	0	856	0	FALSE	ACH-000973
639V_URINARY_TRACT	PRR16--CTD-2334D19.1	7	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	60	0	0.17	1	0.081	0.0579	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	639V_URINARY_TRACT	0.17	1	0.1389	FALSE	56	216	12	147	0	FALSE	ACH-000973
639V_URINARY_TRACT	PTMA--PTMS	7	1	PTMA	6054	chr2:232576687:+	PTMS	13789	chr12:6879154:+	INCL_NON_REF_SPLICE	YES	3318	768	0	0.01	0.081	0.0116	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	639V_URINARY_TRACT	0	0.01	0.0926	FALSE	0	0	0	16	0	FALSE	ACH-000973
639V_URINARY_TRACT	NRIP1--AF127936.7	6	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0695	0.0232	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	639V_URINARY_TRACT	0.89	1	0.0927	FALSE	292	1546	117	613	0	FALSE	ACH-000973
639V_URINARY_TRACT	MT-ATP6--MT-CO1	6	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	6666	15230	0	0	0.0695	0.0116	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	639V_URINARY_TRACT	0	0	0.0811	FALSE	183	104	9	328	0	FALSE	ACH-000973
639V_URINARY_TRACT	C15orf57--CBX3	5	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	48	26	0.16	0.26	0.0579	0.0463	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	639V_URINARY_TRACT	0.16	0.26	0.1042	TRUE	267	562	48	632	0	FALSE	ACH-000973
639V_URINARY_TRACT	PFN1--RP11-742N3.1	6	0	PFN1	1583	chr17:4851774:-	RP11-742N3.1	7418	chr11:82400578:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0695	0	PFN1->Oncogene{Bushman},chr17:4848947-4852356:-,profilin_1,RP11-742N3.1->chr11:82400571-82400944:+	639V_URINARY_TRACT	1	1	0.0695	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	MT-ND6--MT-TE	3	11	MT-ND6	1049	chrM:14625:-	MT-TE	4522	chrM:14746:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0.1274	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	639V_URINARY_TRACT	1	1	0.1621	FALSE	499	1288	110	792	0	FALSE	ACH-000973
639V_URINARY_TRACT	C15orf57--CBX3	4	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	48	25	0.14	0.24	0.0463	0.0463	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	639V_URINARY_TRACT	0.14	0.24	0.0926	TRUE	267	562	48	632	0	FALSE	ACH-000973
639V_URINARY_TRACT	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	639V_URINARY_TRACT	1	1	0.0579	FALSE	462	80	0	856	0	FALSE	ACH-000973
639V_URINARY_TRACT	NRIP1--AF127936.7	4	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.33	1	0.0463	0.0463	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	639V_URINARY_TRACT	0.33	1	0.0926	FALSE	164	806	69	479	0	FALSE	ACH-000973
639V_URINARY_TRACT	MT-ND6--MT-TE	4	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0.0347	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	639V_URINARY_TRACT	1	1	0.081	FALSE	499	1288	110	792	0	FALSE	ACH-000973
639V_URINARY_TRACT	MT-ND6--MT-TE	3	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0.0695	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	639V_URINARY_TRACT	1	1	0.1042	FALSE	499	1288	110	792	0	FALSE	ACH-000973
639V_URINARY_TRACT	PRR16--CTD-2334D19.1	3	6	PRR16	8644	chr5:120022405:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	40	0	0.18	1	0.0347	0.0695	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	639V_URINARY_TRACT	0.18	1	0.1042	FALSE	21	45	1	60	0	FALSE	ACH-000973
639V_URINARY_TRACT	PTMA--PTMS	4	1	PTMA	6002	chr2:232576635:+	PTMS	13746	chr12:6879111:+	INCL_NON_REF_SPLICE	NO	3280	550	0	0.01	0.0463	0.0116	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	639V_URINARY_TRACT	0	0.01	0.0579	FALSE	0	0	0	16	0	FALSE	ACH-000973
639V_URINARY_TRACT	MT-CO3--MT-ATP6	4	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	639V_URINARY_TRACT	1	1	0.0463	FALSE	189	492	56	216	0	FALSE	ACH-000973
639V_URINARY_TRACT	C10orf76--MGEA5	2	4	C10orf76	1109	chr10:103815842:-	MGEA5	44835	chr10:103553501:-	ONLY_REF_SPLICE	YES	4	139	0.6	0.04	0.0232	0.0463	NEIGHBORS[26660],C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76,MGEA5->chr10:103544200-103578696:-,meningioma_expressed_antigen_5_(hyaluronidase)	639V_URINARY_TRACT	0.04	0.6	0.0695	FALSE	0	0	0	1	0	FALSE	ACH-000973
639V_URINARY_TRACT	HSP90AB1--MT-RNR2	3	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	639V_URINARY_TRACT	1	1	0.0347	FALSE	13	9	0	364	0	FALSE	ACH-000973
639V_URINARY_TRACT	MT-ATP6--MT-CO1	3	0	MT-ATP6	1079	chrM:8605:+	MT-CO1	5225	chrM:6447:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	639V_URINARY_TRACT	1	1	0.0347	FALSE	183	104	9	328	0	FALSE	ACH-000973
639V_URINARY_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	639V_URINARY_TRACT	1	1	0.0347	FALSE	499	1288	110	792	0	FALSE	ACH-000973
639V_URINARY_TRACT	PTMA--PTMS	3	0	PTMA	6593	chr2:232577226:+	PTMS	14193	chr12:6879558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	639V_URINARY_TRACT	1	1	0.0347	TRUE	0	0	0	16	0	TRUE	ACH-000973
639V_URINARY_TRACT	PTMA--PTMS	3	0	PTMA	6014	chr2:232576647:+	PTMS	13776	chr12:6879141:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	639V_URINARY_TRACT	1	1	0.0347	TRUE	0	0	0	16	0	TRUE	ACH-000973
639V_URINARY_TRACT	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.29	1	0.0232	0.0232	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	639V_URINARY_TRACT	0.29	1	0.0464	FALSE	125	705	46	456	0	FALSE	ACH-000973
639V_URINARY_TRACT	CTC-432M15.3--AC034228.7	2	1	CTC-432M15.3	1154	chr5:131132523:-	AC034228.7	50074	chr5:131154556:-	ONLY_REF_SPLICE	YES	14	0	0.18	1	0.0232	0.0116	LOCAL_REARRANGEMENT:-:[10140],CTC-432M15.3->chr5:130761584-131132676:-,AC034228.7->chr5:131142816-131281391:-	639V_URINARY_TRACT	0.18	1	0.0348	TRUE	0	0	0	2	0	TRUE	ACH-000973
639V_URINARY_TRACT	PRR16--CTD-2334D19.1	1	5	PRR16	3559	chr5:119816988:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	70	0	0.08	1	0.0116	0.0579	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	639V_URINARY_TRACT	0.08	1	0.0695	FALSE	1	5	0	12	0	FALSE	ACH-000973
639V_URINARY_TRACT	TIMM23B--AGAP6	2	1	TIMM23B	6950	chr10:51387763:+	AGAP6	10946	chr10:51749068:+	ONLY_REF_SPLICE	YES	0	36	1	0.08	0.0232	0.0116	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,AGAP6->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_6,chr10:51748078-51770259:+	639V_URINARY_TRACT	0.08	1	0.0348	TRUE	2	1	1	8	0	FALSE	ACH-000973
639V_URINARY_TRACT	LINC00958--PSMA1	2	0	LINC00958	1093	chr11:13011003:-	PSMA1	17371	chr11:14539527:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	LINC00958->chr11:12984057-13011095:-,long_intergenic_non-protein_coding_RNA_958,PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1	639V_URINARY_TRACT	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	ODC1--RTFDC1	2	0	ODC1	3365	chr2:10585057:-	RTFDC1	15151	chr20:55048357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	ODC1->chr2:10580094-10588630:-,ornithine_decarboxylase_1,RTFDC1->chr20:55043647-55093943:+,replication_termination_factor_2_domain_containing_1	639V_URINARY_TRACT	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	RPL15--MKI67	2	0	RPL15	1695	chr3:23958730:+	MKI67	14248	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RPL15->chr3:23958036-23965183:+,ribosomal_protein_L15,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	639V_URINARY_TRACT	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	SLC35E3--LARS	2	0	SLC35E3	3944	chr12:69145970:+	LARS	30873	chr5:145524272:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	SLC35E3->chr12:69139886-69187508:+,solute_carrier_family_35_member_E3,LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase	639V_URINARY_TRACT	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000973
639V_URINARY_TRACT	RP11-680G10.1--GSE1	1	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	13	1	0.24	0.0116	0.0347	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	639V_URINARY_TRACT	0.24	1	0.0463	TRUE	458	1351	185	561	0	FALSE	ACH-000973
639V_URINARY_TRACT	HECTD1--ST7L	1	2	HECTD1	38475	chr14:31576773:-	ST7L	70972	chr1:113068733:-	ONLY_REF_SPLICE	NO	118	12	0.02	0.2	0.0116	0.0232	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,ST7L->chr1:113066140-113163447:-,suppression_of_tumorigenicity_7_like	639V_URINARY_TRACT	0.02	0.2	0.0348	TRUE	0	0	0	1	0	FALSE	ACH-000973
639V_URINARY_TRACT	ANKLE2--PGAM5	1	1	ANKLE2	20103	chr12:133310971:-	PGAM5	32497	chr12:133291444:+	ONLY_REF_SPLICE	YES	77	2	0.03	0.5	0.0116	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[3026],ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	639V_URINARY_TRACT	0.03	0.5	0.0232	TRUE	1	1	0	1	0	FALSE	ACH-000973
639V_URINARY_TRACT	C14orf37--PSMA3	1	1	C14orf37	2258	chr14:58758353:-	PSMA3	24456	chr14:58718842:+	ONLY_REF_SPLICE	NO	0	780	1	0	0.0116	0.0116	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	639V_URINARY_TRACT	0	1	0.0232	FALSE	1	3	0	9	0	FALSE	ACH-000973
639V_URINARY_TRACT	GNL3--NEK4	1	1	GNL3	3816	chr3:52721631:+	NEK4	26428	chr3:52775515:-	ONLY_REF_SPLICE	YES	563	79	0	0.02	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[16292],GNL3->G_protein_nucleolar_3,chr3:52715172-52728508:+,NEK4->NIMA_related_kinase_4,chr3:52744800-52804965:-	639V_URINARY_TRACT	0	0.02	0.0232	FALSE	0	0	0	3	0	FALSE	ACH-000973
639V_URINARY_TRACT	POLE--ANKLE2	1	1	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	44	22	0.04	0.08	0.0116	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	639V_URINARY_TRACT	0.04	0.08	0.0232	TRUE	0	0	0	11	0	FALSE	ACH-000973
639V_URINARY_TRACT	RALY--EIF2S2	1	1	RALY	3636	chr20:32619410:+	EIF2S2	18823	chr20:32693351:-	ONLY_REF_SPLICE	YES	424	846	0	0	0.0116	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},NEIGHBORS_OVERLAP:+:-:[20010],RALY->RALY_heterogeneous_nuclear_ribonucleoprotein,chr20:32581452-32696114:+,EIF2S2->chr20:32676104-32700138:-,eukaryotic_translation_initiation_factor_2_subunit_beta	639V_URINARY_TRACT	0	0	0.0232	FALSE	0	1	0	5	0	FALSE	ACH-000973
639V_URINARY_TRACT	RB1--ITM2B	1	1	RB1	15027	chr13:48951170:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	26	214	0.07	0.01	0.0116	0.0116	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	639V_URINARY_TRACT	0.01	0.07	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000973
639V_URINARY_TRACT	TSSC1--TRAPPC12	1	1	TSSC1	1235	chr2:3381419:-	TRAPPC12	28808	chr2:3405548:+	ONLY_REF_SPLICE	YES	161	62	0.01	0.03	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Hippocampus=1,Liver=1,Brain_-_Frontal_Cortex_(BA9)=1,Muscle_-_Skeletal=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:-:+:[1793],TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1,TRAPPC12->chr2:3383446-3488865:+,trafficking_protein_particle_complex_12	639V_URINARY_TRACT	0.01	0.03	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000973
639V_URINARY_TRACT	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	50	0	0.04	1	0.0116	0.0116	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	639V_URINARY_TRACT	0.04	1	0.0232	FALSE	272	151	14	158	0	FALSE	ACH-000973
SNU245_BILIARY_TRACT	TIMM23B--LINC00843	165	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6678	0.2325	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU245_BILIARY_TRACT	1	1	1.9003	TRUE	508	994	45	981	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	TIMM23--RP11-464F9.1	77	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	138	2	0.36	0.97	0.7783	0.0101	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU245_BILIARY_TRACT	0.36	0.97	0.7884	TRUE	519	3926	326	965	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TN	69	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6975	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU245_BILIARY_TRACT	1	1	0.6975	FALSE	369	2501	205	193	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TC	59	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5964	0.091	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU245_BILIARY_TRACT	1	1	0.6874	FALSE	462	80	0	856	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	PLK1S1--RP5-1177M21.1	48	13	PLK1S1	7067	chr20:21143800:+	RP5-1177M21.1	21365	chr20:20951142:+	INCL_NON_REF_SPLICE	YES	60	0	0.5	1	0.4852	0.1314	PLK1S1->Oncogene{Bushman},chr20:21106624-21227260:+,RP5-1177M21.1->chr20:20951089-20953203:+	SNU245_BILIARY_TRACT	0.5	1	0.6166	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TN	17	88	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1718	0.8895	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU245_BILIARY_TRACT	1	1	1.0613	FALSE	369	2501	205	193	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	PLEKHA5--SOX5	36	8	PLEKHA5	3233	chr12:19285384:+	SOX5	65438	chr12:23818498:-	ONLY_REF_SPLICE	YES	279	0	0.14	1	0.3639	0.0809	PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU245_BILIARY_TRACT	0.14	1	0.4448	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	OR51S1--TP53I11	33	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3336	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU245_BILIARY_TRACT	1	1	0.3336	TRUE	402	216	10	229	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	ZNF654--HMGB2	31	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3134	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU245_BILIARY_TRACT	1	1	0.3134	TRUE	0	0	0	518	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TN	17	47	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1718	0.4751	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU245_BILIARY_TRACT	1	1	0.6469	FALSE	369	2501	205	193	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	FAM50A--PTMA	28	1	FAM50A	3402	chrX:153674874:+	PTMA	14613	chr2:232576639:+	INCL_NON_REF_SPLICE	NO	84	4104	0.26	0.01	0.283	0.0101	FAM50A->chrX:153672473-153679002:+,family_with_sequence_similarity_50_member_A,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SNU245_BILIARY_TRACT	0.01	0.26	0.2931	FALSE	0	0	0	2	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	PLEKHA5--SOX5	26	8	PLEKHA5	3233	chr12:19285384:+	SOX5	65435	chr12:23818501:-	ONLY_REF_SPLICE	YES	279	0	0.11	1	0.2628	0.0809	PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU245_BILIARY_TRACT	0.11	1	0.3437	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	FAM50A--PTMA	26	1	FAM50A	3405	chrX:153674877:+	PTMA	14625	chr2:232576651:+	INCL_NON_REF_SPLICE	NO	83	3948	0.25	0.01	0.2628	0.0101	FAM50A->chrX:153672473-153679002:+,family_with_sequence_similarity_50_member_A,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SNU245_BILIARY_TRACT	0.01	0.25	0.2729	FALSE	0	0	0	2	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TN	7	65	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0708	0.657	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU245_BILIARY_TRACT	1	1	0.7278	FALSE	369	2501	205	193	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TN	15	28	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1516	0.283	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU245_BILIARY_TRACT	1	1	0.4346	FALSE	369	2501	205	193	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TN	20	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2022	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU245_BILIARY_TRACT	1	1	0.2022	FALSE	369	2501	205	193	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND6--MT-TE	17	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1718	0.1112	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU245_BILIARY_TRACT	0.97	1	0.283	FALSE	499	1288	110	792	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND6--MT-TE	18	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1819	0.0505	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU245_BILIARY_TRACT	0.96	1	0.2324	FALSE	499	1288	110	792	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	HSP90AB1--MT-RNR2	18	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2033	0	0.01	1	0.1819	0.0101	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU245_BILIARY_TRACT	0.01	1	0.192	FALSE	13	9	0	364	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TN	4	49	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0.4953	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU245_BILIARY_TRACT	1	1	0.5357	FALSE	369	2501	205	193	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND4--MT-ATP8	16	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1617	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU245_BILIARY_TRACT	1	1	0.1617	FALSE	230	193	14	283	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TC--MT-TY	4	44	MT-TC	1061	chrM:5766:-	MT-TY	4075	chrM:5883:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0.4448	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU245_BILIARY_TRACT	1	1	0.4852	FALSE	51	280	19	36	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	ST7--MET	14	3	ST7	1454	chr7:116593745:+	MET	40600	chr7:116339125:+	ONLY_REF_SPLICE	YES	47	115	0.27	0.13	0.1415	0.0303	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1],ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	SNU245_BILIARY_TRACT	0.13	0.27	0.1718	TRUE	0	2	0	2	2	TRUE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TN	3	44	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0.4448	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU245_BILIARY_TRACT	1	1	0.4751	FALSE	369	2501	205	193	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TN	6	30	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0.3032	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU245_BILIARY_TRACT	1	1	0.3638	FALSE	369	2501	205	193	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TC	11	9	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1112	0.091	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU245_BILIARY_TRACT	1	1	0.2022	FALSE	462	80	0	856	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	NRIP1--AF127936.7	12	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.1213	0.0101	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU245_BILIARY_TRACT	0.81	1	0.1314	FALSE	292	1546	117	613	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND4--MT-ATP8	12	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1213	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU245_BILIARY_TRACT	1	1	0.1213	FALSE	230	198	14	283	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TC--MT-TY	11	2	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1112	0.0202	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU245_BILIARY_TRACT	1	1	0.1314	FALSE	51	280	19	36	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND4--MT-ATP8	11	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10198	14	0	0.46	0.1112	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU245_BILIARY_TRACT	0	0.46	0.1213	FALSE	231	205	14	283	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	CAPN8--RP11-504P24.5	10	3	CAPN8	4855	chr1:223816364:-	RP11-504P24.5	26686	chr1:224222758:-	ONLY_REF_SPLICE	YES	102	0	0.11	1	0.1011	0.0303	CAPN8->calpain_8,chr1:223711349-223853436:-,RP11-504P24.5->chr1:224218406-224222758:-	SNU245_BILIARY_TRACT	0.11	1	0.1314	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND6--MT-TE	9	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.091	0.0505	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU245_BILIARY_TRACT	0.93	1	0.1415	FALSE	499	1288	110	792	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ATP6--MT-CO1	9	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11025	16652	0	0	0.091	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU245_BILIARY_TRACT	0	0	0.1011	FALSE	183	104	9	328	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TC	6	12	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0.1213	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU245_BILIARY_TRACT	1	1	0.1819	FALSE	462	80	0	856	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TN	9	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.091	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU245_BILIARY_TRACT	1	1	0.091	FALSE	369	2501	205	193	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND6--MT-TE	4	19	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0404	0.1921	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU245_BILIARY_TRACT	0.96	1	0.2325	FALSE	499	1288	110	792	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	CAPN8--RP11-504P24.5	8	2	CAPN8	2395	chr1:223842032:-	RP11-504P24.5	26686	chr1:224222758:-	ONLY_REF_SPLICE	YES	150	0	0.06	1	0.0809	0.0202	CAPN8->calpain_8,chr1:223711349-223853436:-,RP11-504P24.5->chr1:224218406-224222758:-	SNU245_BILIARY_TRACT	0.06	1	0.1011	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	CHMP4C--RP11-257P3.3	7	4	CHMP4C	3676	chr8:82667719:+	RP11-257P3.3	10251	chr8:82438078:+	ONLY_REF_SPLICE	YES	137	1	0.07	0.92	0.0708	0.0404	CHMP4C->charged_multivesicular_body_protein_4C,chr8:82644669-82671750:+,RP11-257P3.3->chr8:82433853-82445510:+	SNU245_BILIARY_TRACT	0.07	0.92	0.1112	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	MT-ATP6--MT-CO1	7	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	9144	16043	0	0	0.0708	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU245_BILIARY_TRACT	0	0	0.0809	FALSE	183	104	9	328	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	SOX5--LYRM5	7	1	SOX5	14222	chr12:23818378:-	LYRM5	36044	chr12:25356854:+	ONLY_REF_SPLICE	YES	0	283	1	0.03	0.0708	0.0101	SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-,LYRM5->LYR_motif_containing_5,chr12:25348150-25362579:+	SNU245_BILIARY_TRACT	0.03	1	0.0809	TRUE	0	0	0	1	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND4--MT-ATP8	6	4	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	NO	9854	0	0	1	0.0606	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU245_BILIARY_TRACT	0	1	0.101	FALSE	231	217	16	283	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	PLK1S1--RP5-1177M21.1	5	6	PLK1S1	7067	chr20:21143800:+	RP5-1177M21.1	22413	chr20:20952793:+	ONLY_REF_SPLICE	YES	60	0	0.15	1	0.0505	0.0606	PLK1S1->Oncogene{Bushman},chr20:21106624-21227260:+,RP5-1177M21.1->chr20:20951089-20953203:+	SNU245_BILIARY_TRACT	0.15	1	0.1111	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	41	1	0.15	0.0606	0.0101	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU245_BILIARY_TRACT	0.15	1	0.0707	TRUE	465	1949	224	605	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	SLC1A5--MT-ND4L	6	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	409	0	0.02	1	0.0606	0.0101	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU245_BILIARY_TRACT	0.02	1	0.0707	FALSE	0	0	0	189	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	CHMP4C--RP11-257P3.3	5	4	CHMP4C	3676	chr8:82667719:+	RP11-257P3.3	9140	chr8:82433942:+	INCL_NON_REF_SPLICE	YES	137	0	0.06	1	0.0505	0.0404	CHMP4C->charged_multivesicular_body_protein_4C,chr8:82644669-82671750:+,RP11-257P3.3->chr8:82433853-82445510:+	SNU245_BILIARY_TRACT	0.06	1	0.0909	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	NPM1P24--SET	6	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU245_BILIARY_TRACT	1	1	0.0606	TRUE	0	0	0	434	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	RP11-123O10.4--GRIP1	6	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0606	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU245_BILIARY_TRACT	1	1	0.0606	FALSE	416	2512	207	587	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND4--MT-ATP8	5	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11228	0	0	1	0.0505	0.0303	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU245_BILIARY_TRACT	0	1	0.0808	FALSE	231	217	16	283	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND4--MT-ATP8	4	7	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	3849	0	0	1	0.0404	0.0708	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU245_BILIARY_TRACT	0	1	0.1112	FALSE	222	212	16	282	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ATP6--MT-CO1	5	2	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	9041	4827	0	0	0.0505	0.0202	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU245_BILIARY_TRACT	0	0	0.0707	FALSE	183	104	9	328	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND4--MT-ATP8	5	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	11482	4	0	0.6	0.0505	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU245_BILIARY_TRACT	0	0.6	0.0606	FALSE	231	205	14	283	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	CAPN8--RP11-504P24.5	4	4	CAPN8	5508	chr1:223815711:-	RP11-504P24.5	26686	chr1:224222758:-	ONLY_REF_SPLICE	YES	96	0	0.08	1	0.0404	0.0404	CAPN8->calpain_8,chr1:223711349-223853436:-,RP11-504P24.5->chr1:224218406-224222758:-	SNU245_BILIARY_TRACT	0.08	1	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	KRAS--LRMP	5	0	KRAS	1186	chr12:25403685:-	LRMP	33131	chr12:25222284:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0505	0	LOCAL_INVERSION:-:+:[96455],KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	SNU245_BILIARY_TRACT	1	1	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TN	5	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU245_BILIARY_TRACT	1	1	0.0505	FALSE	369	2501	205	193	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	NPM1P24--SET	5	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU245_BILIARY_TRACT	1	1	0.0505	TRUE	0	0	0	434	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU245_BILIARY_TRACT	1	1	0.0505	FALSE	0	0	0	189	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND4--MT-ATP8	3	6	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3592	59	0	0.13	0.0303	0.0606	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU245_BILIARY_TRACT	0	0.13	0.0909	FALSE	218	210	16	281	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	CMTM8--CMTM7	4	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	64	47	0.07	0.1	0.0404	0.0101	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	SNU245_BILIARY_TRACT	0.07	0.1	0.0505	FALSE	118	557	29	88	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	9194	8352	0	0	0.0404	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU245_BILIARY_TRACT	0	0	0.0505	FALSE	183	104	9	328	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-CO2--NCL	4	1	MT-CO2	1330	chrM:7915:+	NCL	10951	chr2:232324997:-	INCL_NON_REF_SPLICE	YES	16953	1839	0	0	0.0404	0.0101	MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,NCL->chr2:232318242-232348352:-,nucleolin	SNU245_BILIARY_TRACT	0	0	0.0505	FALSE	0	0	0	1	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND4--MT-ATP8	3	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10021	59	0	0.12	0.0303	0.0505	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU245_BILIARY_TRACT	0	0.12	0.0808	FALSE	231	217	16	283	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND4--MT-ATP8	3	4	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	10146	0	0	1	0.0303	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU245_BILIARY_TRACT	0	1	0.0707	FALSE	231	217	16	283	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND4--MT-ATP8	3	4	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	9741	0	0	1	0.0303	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU245_BILIARY_TRACT	0	1	0.0707	FALSE	231	217	16	283	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND4--MT-ATP8	3	4	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	10151	0	0	1	0.0303	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU245_BILIARY_TRACT	0	1	0.0707	FALSE	231	217	16	283	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU245_BILIARY_TRACT	1	1	0.0404	FALSE	462	80	0	856	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TN	4	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU245_BILIARY_TRACT	1	1	0.0404	FALSE	369	2501	205	193	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU245_BILIARY_TRACT	1	1	0.0404	FALSE	369	2501	205	193	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU245_BILIARY_TRACT	1	1	0.0404	TRUE	0	0	0	434	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	NRIP1--AF127936.7	3	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	29	0	0.19	1	0.0303	0.0404	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU245_BILIARY_TRACT	0.19	1	0.0707	FALSE	164	806	69	479	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ATP6--MT-CO1	3	3	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	1819	3000	0	0	0.0303	0.0303	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU245_BILIARY_TRACT	0	0	0.0606	FALSE	183	104	9	328	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND4--MT-ATP8	3	3	MT-ND4	1477	chrM:11236:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11305	14	0	0.3	0.0303	0.0303	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU245_BILIARY_TRACT	0	0.3	0.0606	FALSE	231	217	16	283	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND4--MT-ATP8	3	3	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	11305	0	0	1	0.0303	0.0303	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU245_BILIARY_TRACT	0	1	0.0606	FALSE	231	217	16	283	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	NRIP1--AF127936.7	3	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.26	1	0.0303	0.0303	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU245_BILIARY_TRACT	0.26	1	0.0606	FALSE	125	705	46	456	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ATP6--MT-CO1	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8941	16652	0	0	0.0303	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU245_BILIARY_TRACT	0	0	0.0404	FALSE	183	104	9	328	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ATP6--MT-CO1	3	1	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3205	17741	0	0	0.0303	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU245_BILIARY_TRACT	0	0	0.0404	FALSE	183	104	9	328	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND4--MT-ATP8	3	1	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	10267	1084	0	0	0.0303	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU245_BILIARY_TRACT	0	0	0.0404	FALSE	231	205	14	283	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	RP1-178F15.5--RPLP1	3	1	RP1-178F15.5	1244	chr1:153606573:-	RPLP1	9579	chr15:69745182:+	INCL_NON_REF_SPLICE	YES	29	0	0.12	1	0.0303	0.0101	RP1-178F15.5->chr1:153598808-153606816:-,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	SNU245_BILIARY_TRACT	0.12	1	0.0404	TRUE	0	0	0	2	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	MT-ATP6--MT-CO1	3	0	MT-ATP6	1098	chrM:8624:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU245_BILIARY_TRACT	1	1	0.0303	FALSE	183	104	9	328	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU245_BILIARY_TRACT	1	1	0.0303	FALSE	499	1288	110	792	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TA--MT-TN	3	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU245_BILIARY_TRACT	1	1	0.0303	FALSE	369	2501	205	193	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	MT-TC--MT-TY	3	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU245_BILIARY_TRACT	1	1	0.0303	FALSE	51	280	19	36	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0.0303	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU245_BILIARY_TRACT	1	1	0.0505	FALSE	467	2173	244	435	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	GGACT--PCCA	2	2	GGACT	3102	chr13:101236079:-	PCCA	40151	chr13:101179929:+	ONLY_REF_SPLICE	YES	14	196	0.22	0.02	0.0202	0.0202	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	SNU245_BILIARY_TRACT	0.02	0.22	0.0404	TRUE	7	15	0	10	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0.0202	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU245_BILIARY_TRACT	1	1	0.0404	FALSE	407	2205	196	549	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0.0202	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU245_BILIARY_TRACT	1	1	0.0404	FALSE	515	4851	409	746	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	AC073283.4--KCNK12	2	1	AC073283.4	2928	chr2:47559412:-	KCNK12	17700	chr2:47748947:-	ONLY_REF_SPLICE	NO	2	0	0.6	1	0.0202	0.0101	AC073283.4->chr2:47419544-47572213:-,KCNK12->chr2:47743720-47798078:-,potassium_two_pore_domain_channel_subfamily_K_member_12	SNU245_BILIARY_TRACT	0.6	1	0.0303	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	FHDC1--ARFIP1	2	1	FHDC1	2686	chr4:153864707:+	ARFIP1	23532	chr4:153750777:+	ONLY_REF_SPLICE	YES	1	65	0.75	0.04	0.0202	0.0101	LOCAL_REARRANGEMENT:+:[17889],FHDC1->FH2_domain_containing_1,chr4:153857504-153900848:+,ARFIP1->ADP_ribosylation_factor_interacting_protein_1,chr4:153701089-153839615:+	SNU245_BILIARY_TRACT	0.04	0.75	0.0303	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	RCC1--U2AF1	2	1	RCC1	2920	chr1:28835417:+	U2AF1	29293	chr21:44515853:-	ONLY_REF_SPLICE	YES	31	729	0.09	0	0.0202	0.0101	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	SNU245_BILIARY_TRACT	0	0.09	0.0303	FALSE	0	0	0	2	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	UBAP1--DCAF12	2	1	UBAP1	1236	chr9:34179238:+	DCAF12	18196	chr9:34107563:-	ONLY_REF_SPLICE	YES	44	46	0.06	0.06	0.0202	0.0101	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:3=pct:1.7]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=5},LOCAL_INVERSION:+:-:[51606],UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,DCAF12->DDB1_and_CUL4_associated_factor_12,chr9:34086385-34127397:-	SNU245_BILIARY_TRACT	0.06	0.06	0.0303	TRUE	6	1	0	2	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	YWHAE--ABR	2	1	YWHAE	1332	chr17:1303341:-	ABR	26806	chr17:1003975:-	ONLY_REF_SPLICE	YES	1027	52	0	0.05	0.0202	0.0101	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	SNU245_BILIARY_TRACT	0	0.05	0.0303	FALSE	0	0	0	4	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	YWHAZ--ZNF706	2	1	YWHAZ	1120	chr8:101965497:-	ZNF706	24352	chr8:102213971:-	ONLY_REF_SPLICE	YES	92	661	0.03	0	0.0202	0.0101	GTEx_FI:{Skin=[count:2=pct:0.6],Blood=[count:2=pct:1.1],Esophagus=[count:1=pct:0.2],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta,ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706	SNU245_BILIARY_TRACT	0	0.03	0.0303	FALSE	1	0	0	2	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	ARHGEF18--GPHN	2	0	ARHGEF18	1135	chr19:7460133:+	GPHN	44467	chr14:67525366:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	ARHGEF18->Rho/Rac_guanine_nucleotide_exchange_factor_18,chr19:7459999-7537363:+,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	CASC4--GCOM1	2	0	CASC4	1628	chr15:44581554:+	GCOM1	26480	chr15:57896467:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+,GCOM1->GRINL1A_complex_locus_1,chr15:57884106-58006943:+	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	9	0	44	1	FALSE	ACH-000268
SNU245_BILIARY_TRACT	HSPD1--NUCKS1	2	0	HSPD1	5097	chr2:198361864:-	NUCKS1	18766	chr1:205696933:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	HSPD1->Oncogene{Bushman},chr2:198351305-198381461:-,heat_shock_protein_family_D_(Hsp60)_member_1,NUCKS1->chr1:205681947-205719404:-,nuclear_casein_kinase_and_cyclin-dependent_kinase_substrate_1	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	KRAS--LRMP	2	0	KRAS	2308	chr12:25398208:-	LRMP	42567	chr12:25254112:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	LOCAL_INVERSION:-:+:[96455],KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	NBR2--ALDH3A2	2	0	NBR2	1161	chr17:41277787:+	ALDH3A2	18743	chr17:19559679:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	NBR2->chr17:41277627-41305688:+,neighbor_of_BRCA1_gene_2_(non-protein_coding),ALDH3A2->aldehyde_dehydrogenase_3_family_member_A2,chr17:19551449-19580911:+	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	2	0	4	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	NEK7--CD46	2	0	NEK7	1314	chr1:198126406:+	CD46	24623	chr1:207930359:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	NEK7->NIMA_related_kinase_7,chr1:198126093-198291550:+,CD46->CD46_molecule,Oncogene{Bushman},chr1:207925402-207968858:+	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	PCMTD1--FDFT1	2	0	PCMTD1	1246	chr8:52811490:-	FDFT1	25192	chr8:11666303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	RBM6--RHOA	2	0	RBM6	3185	chr3:50000118:+	RHOA	37115	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Lung=1,Pituitary=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	4	1	6	1	TRUE	ACH-000268
SNU245_BILIARY_TRACT	RNF126--BSG	2	0	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	2	0	12	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	GGACT--PCCA	1	2	GGACT	3102	chr13:101236079:-	PCCA	10533	chr13:100755137:+	ONLY_REF_SPLICE	YES	14	73	0.18	0.04	0.0101	0.0202	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	SNU245_BILIARY_TRACT	0.04	0.18	0.0303	TRUE	0	0	0	1	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	GGACT--PCCA	1	2	GGACT	3102	chr13:101236079:-	PCCA	22191	chr13:100914983:+	ONLY_REF_SPLICE	YES	14	63	0.18	0.05	0.0101	0.0202	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	SNU245_BILIARY_TRACT	0.05	0.18	0.0303	TRUE	1	0	0	1	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	AC073283.4--KCNK12	1	1	AC073283.4	4896	chr2:47550560:-	KCNK12	17700	chr2:47748947:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0101	0.0101	AC073283.4->chr2:47419544-47572213:-,KCNK12->chr2:47743720-47798078:-,potassium_two_pore_domain_channel_subfamily_K_member_12	SNU245_BILIARY_TRACT	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000268
SNU245_BILIARY_TRACT	FHDC1--ARFIP1	1	1	FHDC1	2686	chr4:153864707:+	ARFIP1	20771	chr4:153728356:+	ONLY_REF_SPLICE	YES	1	76	0.67	0.03	0.0101	0.0101	LOCAL_REARRANGEMENT:+:[17889],FHDC1->FH2_domain_containing_1,chr4:153857504-153900848:+,ARFIP1->ADP_ribosylation_factor_interacting_protein_1,chr4:153701089-153839615:+	SNU245_BILIARY_TRACT	0.03	0.67	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	LHFPL2--AP3B1	1	1	LHFPL2	7033	chr5:77928087:-	AP3B1	25271	chr5:77563419:-	ONLY_REF_SPLICE	YES	24	85	0.08	0.02	0.0101	0.0101	LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	SNU245_BILIARY_TRACT	0.02	0.08	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	TMEM123--YAP1	1	1	TMEM123	5695	chr11:102319543:-	YAP1	19808	chr11:102056749:+	ONLY_REF_SPLICE	YES	411	87	0	0.02	0.0101	0.0101	{Klijn_CCL:Head-Neck=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	SNU245_BILIARY_TRACT	0	0.02	0.0202	FALSE	0	0	0	2	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	TXN--MAP3K11	1	1	TXN	4211	chr9:113007058:-	MAP3K11	15127	chr11:65375905:-	ONLY_REF_SPLICE	YES	1476	72	0	0.03	0.0101	0.0101	TXN->Oncogene{Bushman},chr9:113006091-113018920:-,thioredoxin,MAP3K11->chr11:65365226-65382853:-,mitogen-activated_protein_kinase_kinase_kinase_11	SNU245_BILIARY_TRACT	0	0.03	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000268
SNU245_BILIARY_TRACT	USP36--CUL4B	1	1	USP36	3308	chr17:76834669:-	CUL4B	37297	chrX:119694480:-	ONLY_REF_SPLICE	YES	70	26	0.03	0.07	0.0101	0.0101	USP36->chr17:76783463-76837523:-,ubiquitin_specific_peptidase_36,CUL4B->Oncogene{Bushman},chrX:119658464-119709649:-,cullin_4B	SNU245_BILIARY_TRACT	0.03	0.07	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000268
TE159T_FIBROBLAST	TIMM23B--LINC00843	101	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7641	0.2345	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TE159T_FIBROBLAST	1	1	0.9986	TRUE	508	994	45	981	0	FALSE	ACH-000175
TE159T_FIBROBLAST	TIMM23--RP11-464F9.1	60	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	229	1	0.22	0.98	0.4539	0.0227	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TE159T_FIBROBLAST	0.22	0.98	0.4766	TRUE	519	3926	326	965	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-TA--MT-TC	43	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3253	0.0378	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE159T_FIBROBLAST	1	1	0.3631	FALSE	462	80	0	856	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ND6--MT-TE	33	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2497	0.0227	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE159T_FIBROBLAST	1	1	0.2724	FALSE	499	1288	110	792	0	FALSE	ACH-000175
TE159T_FIBROBLAST	OR51S1--TP53I11	30	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.227	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	TE159T_FIBROBLAST	1	1	0.227	TRUE	402	216	10	229	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ND6--MT-TE	24	14	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.1816	0.1059	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE159T_FIBROBLAST	0.9	1	0.2875	FALSE	499	1288	110	792	0	FALSE	ACH-000175
TE159T_FIBROBLAST	RSBN1L--PTPN12	22	9	RSBN1L	1613	chr7:77326372:+	PTPN12	39555	chr7:77265099:+	ONLY_REF_SPLICE	YES	7	129	0.82	0.19	0.1664	0.0681	LOCAL_REARRANGEMENT:+:[56372],RSBN1L->chr7:77325760-77412339:+,round_spermatid_basic_protein_1_like,PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12	TE159T_FIBROBLAST	0.19	0.82	0.2345	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	MT-ND6--MT-TE	22	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1664	0.0227	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE159T_FIBROBLAST	1	1	0.1891	FALSE	499	1288	110	792	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ND4--MT-ND4L	3	75	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	7	0	0.92	1	0.0227	0.5674	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE159T_FIBROBLAST	0.92	1	0.5901	FALSE	344	826	44	306	0	FALSE	ACH-000175
TE159T_FIBROBLAST	RP11-680G10.1--GSE1	17	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.89	0.1286	0.0605	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TE159T_FIBROBLAST	0.89	1	0.1891	TRUE	458	1351	185	561	0	FALSE	ACH-000175
TE159T_FIBROBLAST	C15orf57--CBX3	15	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	24	21	0.48	0.51	0.1135	0.053	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TE159T_FIBROBLAST	0.48	0.51	0.1665	TRUE	267	562	48	632	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-RNR2	15	2	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	10110	0	0	1	0.1135	0.0151	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE159T_FIBROBLAST	0	1	0.1286	FALSE	63	17	1	58	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-CO1	15	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1135	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE159T_FIBROBLAST	1	1	0.1135	FALSE	183	104	9	328	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-RNR2	15	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1135	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE159T_FIBROBLAST	1	1	0.1135	FALSE	63	17	1	58	0	FALSE	ACH-000175
TE159T_FIBROBLAST	RP11-680G10.1--GSE1	11	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	2	1	0.89	0.0832	0.0454	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TE159T_FIBROBLAST	0.89	1	0.1286	TRUE	465	1949	224	605	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-CO1--MT-ND1	11	5	MT-CO1	1653	chrM:6556:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	21303	3590	0	0	0.0832	0.0378	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	TE159T_FIBROBLAST	0	0	0.121	FALSE	39	30	6	19	0	FALSE	ACH-000175
TE159T_FIBROBLAST	IGFBP4--NPM1	12	0	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0908	0	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	TE159T_FIBROBLAST	1	1	0.0908	TRUE	0	0	0	38	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-CO1	12	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0908	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE159T_FIBROBLAST	1	1	0.0908	FALSE	183	104	9	328	0	FALSE	ACH-000175
TE159T_FIBROBLAST	PRR16--CTD-2334D19.1	11	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	62	0	0.18	1	0.0832	0.0227	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	TE159T_FIBROBLAST	0.18	1	0.1059	FALSE	56	216	12	147	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-RNR2	11	1	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	9791	7486	0	0	0.0832	0.0076	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE159T_FIBROBLAST	0	0	0.0908	FALSE	63	17	1	58	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-TA--MT-TC	10	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0757	0.0151	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE159T_FIBROBLAST	1	1	0.0908	FALSE	462	80	0	856	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-RNR2	10	1	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	9787	7457	0	0	0.0757	0.0076	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE159T_FIBROBLAST	0	0	0.0833	FALSE	63	17	1	58	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ND6--MT-TE	5	20	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.0378	0.1513	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE159T_FIBROBLAST	0.86	1	0.1891	FALSE	499	1288	110	792	0	FALSE	ACH-000175
TE159T_FIBROBLAST	COL8A1--CMSS1	8	7	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	660	95	0.02	0.14	0.0605	0.053	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	TE159T_FIBROBLAST	0.02	0.14	0.1135	FALSE	76	19	3	26	0	FALSE	ACH-000175
TE159T_FIBROBLAST	RP4-565E6.1--HYDIN	9	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0681	0.0151	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	TE159T_FIBROBLAST	1	1	0.0832	TRUE	456	1387	91	133	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-CO1	9	1	MT-ATP6	1265	chrM:8791:+	MT-CO1	5019	chrM:6241:+	INCL_NON_REF_SPLICE	YES	14073	15650	0	0	0.0681	0.0076	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE159T_FIBROBLAST	0	0	0.0757	FALSE	183	104	9	328	0	FALSE	ACH-000175
TE159T_FIBROBLAST	RP1-34H18.1--NAV3	9	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	3	1	0.77	0.0681	0.0076	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	TE159T_FIBROBLAST	0.77	1	0.0757	TRUE	254	575	65	124	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-RNR2	8	1	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	10110	7885	0	0	0.0605	0.0076	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE159T_FIBROBLAST	0	0	0.0681	FALSE	63	17	1	58	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ND6--MT-TE	3	19	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0227	0.1437	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE159T_FIBROBLAST	0.88	1	0.1664	FALSE	499	1288	110	792	0	FALSE	ACH-000175
TE159T_FIBROBLAST	ELN--COL1A2	6	2	ELN	17444	chr7:73470705:+	COL1A2	41943	chr7:94040414:+	INCL_NON_REF_SPLICE	NO	2847	8170	0	0	0.0454	0.0151	ELN->Oncogene{Bushman},chr7:73442119-73484237:+,elastin,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	TE159T_FIBROBLAST	0	0	0.0605	FALSE	0	0	0	1	0	FALSE	ACH-000175
TE159T_FIBROBLAST	ELN--COL1A2	3	13	ELN	23600	chr7:73480043:+	COL1A2	36077	chr7:94034005:+	INCL_NON_REF_SPLICE	NO	4045	8040	0	0	0.0227	0.0984	ELN->Oncogene{Bushman},chr7:73442119-73484237:+,elastin,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	TE159T_FIBROBLAST	0	0	0.1211	FALSE	0	0	0	1	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-CO1--MT-ND1	6	1	MT-CO1	1324	chrM:6227:+	MT-ND1	5558	chrM:3322:+	INCL_NON_REF_SPLICE	NO	15503	0	0	1	0.0454	0.0076	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	TE159T_FIBROBLAST	0	1	0.053	FALSE	39	29	6	19	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-TA--MT-TC	5	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0.0378	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE159T_FIBROBLAST	1	1	0.0756	FALSE	462	80	0	856	0	FALSE	ACH-000175
TE159T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	6	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0454	0.0076	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE159T_FIBROBLAST	1	1	0.053	FALSE	407	2205	196	549	0	FALSE	ACH-000175
TE159T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	6	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.78	0.0454	0.0076	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE159T_FIBROBLAST	0.78	1	0.053	FALSE	515	4851	409	746	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ND4--MT-ND4L	3	12	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	17	0	0.47	1	0.0227	0.0908	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE159T_FIBROBLAST	0.47	1	0.1135	FALSE	344	826	44	306	0	FALSE	ACH-000175
TE159T_FIBROBLAST	PRR16--CTD-2334D19.1	5	4	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	43	0	0.17	1	0.0378	0.0303	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	TE159T_FIBROBLAST	0.17	1	0.0681	FALSE	21	45	1	60	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-CO1	5	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2675	21409	0	0	0.0378	0.0227	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE159T_FIBROBLAST	0	0	0.0605	FALSE	183	104	9	328	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-RNR2	5	2	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	8846	0	0	1	0.0378	0.0151	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE159T_FIBROBLAST	0	1	0.0529	FALSE	63	17	1	58	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-CO1	5	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	10399	17897	0	0	0.0378	0.0076	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE159T_FIBROBLAST	0	0	0.0454	FALSE	183	104	9	328	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1121	chrM:8647:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	YES	8837	7495	0	0	0.0378	0.0076	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE159T_FIBROBLAST	0	0	0.0454	FALSE	63	17	1	58	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE159T_FIBROBLAST	1	1	0.0378	FALSE	63	17	1	58	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ND6--MT-TE	3	8	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	NO	1	0	0.92	1	0.0227	0.0605	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE159T_FIBROBLAST	0.92	1	0.0832	FALSE	499	1288	110	792	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE159T_FIBROBLAST	1	1	0.0378	FALSE	499	1288	110	792	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-CO1--MT-ND1	3	7	MT-CO1	1971	chrM:6874:+	MT-ND1	5731	chrM:3495:+	INCL_NON_REF_SPLICE	YES	20267	3488	0	0	0.0227	0.053	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	TE159T_FIBROBLAST	0	0	0.0757	FALSE	39	30	6	19	0	FALSE	ACH-000175
TE159T_FIBROBLAST	CTD-2337A12.1--CAST	4	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	49	1	0.11	0.0303	0.0151	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	TE159T_FIBROBLAST	0.11	1	0.0454	TRUE	347	1186	183	220	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-RNR2	3	6	MT-ATP6	1516	chrM:9042:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	YES	5050	7770	0	0	0.0227	0.0454	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE159T_FIBROBLAST	0	0	0.0681	FALSE	63	17	1	58	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ND4--MT-ND4L	3	6	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	3	0	0.75	1	0.0227	0.0454	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE159T_FIBROBLAST	0.75	1	0.0681	FALSE	344	826	44	306	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	8875	7748	0	0	0.0303	0.0076	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE159T_FIBROBLAST	0	0	0.0379	FALSE	63	17	1	58	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ND4--MT-ND4L	3	5	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0227	0.0378	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE159T_FIBROBLAST	1	1	0.0605	FALSE	344	821	44	306	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ND4--MT-ND4L	3	5	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	33	0	0.2	1	0.0227	0.0378	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE159T_FIBROBLAST	0.2	1	0.0605	FALSE	344	827	44	306	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ND6--MT-TE	3	5	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0227	0.0378	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE159T_FIBROBLAST	0.89	1	0.0605	FALSE	499	1288	110	792	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE159T_FIBROBLAST	1	1	0.0303	FALSE	63	17	1	58	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-RNR2	3	4	MT-ATP6	1158	chrM:8684:+	MT-RNR2	4726	chrM:1715:+	INCL_NON_REF_SPLICE	YES	10485	0	0	1	0.0227	0.0303	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE159T_FIBROBLAST	0	1	0.053	FALSE	63	17	1	58	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE159T_FIBROBLAST	1	1	0.0303	FALSE	462	80	0	856	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1158	chrM:8684:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	10485	8177	0	0	0.0227	0.0227	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE159T_FIBROBLAST	0	0	0.0454	FALSE	63	17	1	58	0	FALSE	ACH-000175
TE159T_FIBROBLAST	ELN--COL1A2	3	2	ELN	13922	chr7:73466276:+	COL1A2	36077	chr7:94034005:+	INCL_NON_REF_SPLICE	NO	4224	8040	0	0	0.0227	0.0151	ELN->Oncogene{Bushman},chr7:73442119-73484237:+,elastin,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	TE159T_FIBROBLAST	0	0	0.0378	FALSE	0	0	0	1	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1148	chrM:8674:+	MT-RNR2	4731	chrM:1720:+	INCL_NON_REF_SPLICE	YES	9991	0	0	1	0.0227	0.0151	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE159T_FIBROBLAST	0	1	0.0378	FALSE	63	17	1	58	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1133	chrM:8659:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	YES	8911	7770	0	0	0.0227	0.0076	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE159T_FIBROBLAST	0	0	0.0303	FALSE	63	17	1	58	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	8763	7891	0	0	0.0227	0.0076	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE159T_FIBROBLAST	0	0	0.0303	FALSE	63	17	1	58	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-CO1--MT-ND1	3	1	MT-CO1	1611	chrM:6514:+	MT-ND1	5592	chrM:3356:+	INCL_NON_REF_SPLICE	YES	18290	0	0	1	0.0227	0.0076	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	TE159T_FIBROBLAST	0	1	0.0303	FALSE	39	30	6	19	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-CO1--MT-ND1	3	1	MT-CO1	1558	chrM:6461:+	MT-ND1	6029	chrM:3793:+	INCL_NON_REF_SPLICE	YES	17484	3861	0	0	0.0227	0.0076	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	TE159T_FIBROBLAST	0	0	0.0303	FALSE	39	30	6	19	0	FALSE	ACH-000175
TE159T_FIBROBLAST	COL6A1--GSTT1	3	0	COL6A1	16056	chr21:47421243:+	GSTT1	29599	chr22:24376497:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:1/3694=0.03%,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1,GSTT1->Oncogene{Bushman},chr22:24376133-24384680:-,glutathione_S-transferase_theta_1	TE159T_FIBROBLAST	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5226	chrM:6448:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE159T_FIBROBLAST	1	1	0.0227	FALSE	183	104	9	328	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1132	chrM:8658:+	MT-RNR2	5436	chrM:2425:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE159T_FIBROBLAST	1	1	0.0227	FALSE	63	17	1	58	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MT-ND4--MT-ND4L	3	0	MT-ND4	1003	chrM:10762:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0227	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE159T_FIBROBLAST	1	1	0.0227	FALSE	344	821	44	306	0	FALSE	ACH-000175
TE159T_FIBROBLAST	RNF149--CYB5D2	3	0	RNF149	7711	chr2:101898321:-	CYB5D2	18133	chr17:4053185:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RNF149->chr2:101887681-101925163:-,ring_finger_protein_149,CYB5D2->chr17:4046462-4090605:+,cytochrome_b5_domain_containing_2	TE159T_FIBROBLAST	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	TRPS1--DHX15	3	0	TRPS1	21935	chr8:116423454:-	DHX15	48353	chr4:24529339:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0227	0	TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,DHX15->DEAH-box_helicase_15,chr4:24519064-24586173:-	TE159T_FIBROBLAST	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	RP11-466L17.1--RP11-90C4.1	2	2	RP11-466L17.1	2240	chr1:56080675:+	RP11-90C4.1	11159	chr1:56297937:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0151	0.0151	NEIGHBORS[88805],RP11-466L17.1->chr1:56046710-56200675:+,RP11-90C4.1->chr1:56289480-56333921:+	TE159T_FIBROBLAST	0.67	1	0.0302	FALSE	351	187	22	6	0	FALSE	ACH-000175
TE159T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.67	0.0151	0.0151	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE159T_FIBROBLAST	0.67	1	0.0302	FALSE	467	2173	244	435	0	FALSE	ACH-000175
TE159T_FIBROBLAST	ABI3BP--TFG	2	0	ABI3BP	63949	chr3:100484685:-	TFG	85414	chr3:100466993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:2=pct:0.7],Ovary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=21;pct=0.24%;dist=Artery_-_Coronary=3,Thyroid=3,Adipose_-_Subcutaneous=3,Lung=2,Breast_-_Mammary_Tissue=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[190],ABI3BP->ABI_family_member_3_binding_protein,chr3:100468000-100712359:-,TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+	TE159T_FIBROBLAST	1	1	0.0151	TRUE	4	1	0	1	0	FALSE	ACH-000175
TE159T_FIBROBLAST	ALCAM--IST1	2	0	ALCAM	1573	chr3:105086325:+	IST1	42680	chr16:71957191:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	ALCAM->activated_leukocyte_cell_adhesion_molecule,chr3:105085753-105295744:+,IST1->IST1,_ESCRT-III_associated_factor,chr16:71879899-71962913:+	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	AP000487.5--SFXN5	2	0	AP000487.5	1391	chr11:70244204:-	SFXN5	13954	chr2:73285725:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	AP000487.5->chr11:70218352-70244594:-,SFXN5->chr2:73169165-73302747:-,sideroflexin_5	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	CYR61--ALKBH7	2	0	CYR61	2524	chr1:86047967:+	ALKBH7	9235	chr19:6374476:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	CYR61->Oncogene{Bushman},chr1:86046444-86049645:+,cysteine_rich_angiogenic_inducer_61,ALKBH7->alkB_homolog_7,chr19:6372444-6375042:+	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	DCAF13--SKIV2L2	2	0	DCAF13	1803	chr8:104427744:+	SKIV2L2	39097	chr5:54683802:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	DCAF13->DDB1_and_CUL4_associated_factor_13,chr8:104426942-104455681:+,SKIV2L2->Ski2_like_RNA_helicase_2,chr5:54603588-54721409:+	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	FBN1--PITPNC1	2	0	FBN1	2244	chr15:48936803:-	PITPNC1	84478	chr17:65628259:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	FBN1->chr15:48700503-48938046:-,fibrillin_1,PITPNC1->chr17:65373575-65693372:+,phosphatidylinositol_transfer_protein,_cytoplasmic_1	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	GLG1--AP1G1	2	0	GLG1	16292	chr16:74508444:-	AP1G1	39287	chr16:71823385:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	KDM6A--LINC00222	2	0	KDM6A	1477	chrX:44733233:+	LINC00222	36108	chr6:109080621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A,LINC00222->chr6:109072857-109091145:+,long_intergenic_non-protein_coding_RNA_222	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	KLHL8--NUDT9	2	0	KLHL8	3030	chr4:88141570:-	NUDT9	21984	chr4:88356133:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},KLHL8->chr4:88081255-88161466:-,kelch_like_family_member_8,NUDT9->chr4:88343734-88380606:+,nudix_hydrolase_9	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	PDIA6--SERPINE2	2	0	PDIA6	18507	chr2:10927407:-	SERPINE2	35638	chr2:224847498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	PDIA6->chr2:10923517-10978103:-,protein_disulfide_isomerase_family_A_member_6,SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	RBPJ--C6orf203	2	0	RBPJ	9966	chr4:26364250:+	C6orf203	37694	chr6:107372261:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	RBPJ->chr4:26165077-26436541:+,recombination_signal_binding_protein_for_immunoglobulin_kappa_J_region,C6orf203->chr6:107349407-107372546:+,chromosome_6_open_reading_frame_203	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	RP1-34H18.1--RP11-781A6.1	2	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	TE159T_FIBROBLAST	1	1	0.0151	TRUE	94	160	11	37	0	FALSE	ACH-000175
TE159T_FIBROBLAST	RP11-435B5.4--PDE4DIP	2	0	RP11-435B5.4	2843	chr1:143465380:-	PDE4DIP	42532	chr1:144923821:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	RP11-435B5.4->chr1:143354963-143467632:-,PDE4DIP->Oncogene{Bushman},chr1:144836157-145076186:-,phosphodiesterase_4D_interacting_protein	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	RQCD1--MYO1B	2	0	RQCD1	1399	chr2:219433701:+	MYO1B	27469	chr2:192225357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	RQCD1->chr2:219433303-219461803:+,MYO1B->chr2:192109911-192290115:+,myosin_IB	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	SNX6--KPNA3	2	0	SNX6	12510	chr14:35044962:-	KPNA3	21570	chr13:50321129:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	SNX6->chr14:35030300-35099389:-,sorting_nexin_6,KPNA3->chr13:50273447-50367057:-,karyopherin_subunit_alpha_3	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	SUPT5H--TGFBI	2	0	SUPT5H	8559	chr19:39949889:+	TGFBI	42689	chr5:135398875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	SUPT5H->SPT5_homolog,_DSIF_elongation_factor_subunit,chr19:39926796-39967310:+,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	THRAP3--MYL12B	2	0	THRAP3	1090	chr1:36690106:+	MYL12B	22323	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	TPM1--CIRBP	2	0	TPM1	2200	chr15:63336030:+	CIRBP	29266	chr19:1270927:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha),CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	ZNF45--MSANTD2	2	0	ZNF45	6438	chr19:44429477:-	MSANTD2	20312	chr11:124644714:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	ZNF45->chr19:44416781-44439430:-,zinc_finger_protein_45,MSANTD2->Myb/SANT_DNA_binding_domain_containing_2,chr11:124636394-124670569:-	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	ZNF846--NPLOC4	2	0	ZNF846	5260	chr19:9878965:-	NPLOC4	35357	chr17:79539114:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	ZNF846->chr19:9862669-9903856:-,zinc_finger_protein_846,NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-	TE159T_FIBROBLAST	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000175
TE159T_FIBROBLAST	CRIM1--FEZ2	1	3	CRIM1	21418	chr2:36764689:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	685	336	0.01	0.01	0.0076	0.0227	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	TE159T_FIBROBLAST	0.01	0.01	0.0303	FALSE	1	4	0	11	0	FALSE	ACH-000175
TE159T_FIBROBLAST	ELN--COL1A2	1	3	ELN	16339	chr7:73469099:+	COL1A2	32757	chr7:94028361:+	ONLY_REF_SPLICE	YES	3840	7968	0	0	0.0076	0.0227	ELN->Oncogene{Bushman},chr7:73442119-73484237:+,elastin,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	TE159T_FIBROBLAST	0	0	0.0303	FALSE	0	0	0	1	0	FALSE	ACH-000175
TE159T_FIBROBLAST	GREM2--FMN2	1	2	GREM2	1266	chr1:240775184:-	FMN2	32169	chr1:240555811:+	ONLY_REF_SPLICE	YES	636	104	0	0.03	0.0076	0.0151	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[14384],GREM2->chr1:240652873-240775449:-,gremlin_2,_DAN_family_BMP_antagonist,FMN2->chr1:240177648-240638489:+,formin_2	TE159T_FIBROBLAST	0	0.03	0.0227	FALSE	0	0	0	3	0	FALSE	ACH-000175
TE159T_FIBROBLAST	GREM2--FMN2	1	2	GREM2	1266	chr1:240775184:-	FMN2	26131	chr1:240458122:+	ONLY_REF_SPLICE	NO	636	93	0	0.03	0.0076	0.0151	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[14384],GREM2->chr1:240652873-240775449:-,gremlin_2,_DAN_family_BMP_antagonist,FMN2->chr1:240177648-240638489:+,formin_2	TE159T_FIBROBLAST	0	0.03	0.0227	FALSE	0	0	0	2	0	FALSE	ACH-000175
TE159T_FIBROBLAST	GREM2--FMN2	1	2	GREM2	1266	chr1:240775184:-	FMN2	33221	chr1:240601361:+	ONLY_REF_SPLICE	YES	636	138	0	0.02	0.0076	0.0151	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[14384],GREM2->chr1:240652873-240775449:-,gremlin_2,_DAN_family_BMP_antagonist,FMN2->chr1:240177648-240638489:+,formin_2	TE159T_FIBROBLAST	0	0.02	0.0227	FALSE	0	0	0	3	0	FALSE	ACH-000175
TE159T_FIBROBLAST	CRIM1--FEZ2	1	1	CRIM1	1698	chr2:36583766:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	616	336	0	0.01	0.0076	0.0076	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	TE159T_FIBROBLAST	0	0.01	0.0152	FALSE	2	0	0	2	0	FALSE	ACH-000175
TE159T_FIBROBLAST	MYO1E--ANXA2	1	1	MYO1E	11465	chr15:59515258:-	ANXA2	54801	chr15:60656722:-	ONLY_REF_SPLICE	YES	121	5139	0.02	0	0.0076	0.0076	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},MYO1E->chr15:59427113-59665099:-,myosin_IE,ANXA2->annexin_A2,chr15:60639333-60695082:-	TE159T_FIBROBLAST	0	0.02	0.0152	FALSE	0	0	0	1	0	FALSE	ACH-000175
TE159T_FIBROBLAST	NCOR2--UBC	1	1	NCOR2	3484	chr12:125002686:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	10	79	0.17	0.02	0.0076	0.0076	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	TE159T_FIBROBLAST	0.02	0.17	0.0152	TRUE	7	26	3	12	0	FALSE	ACH-000175
TE159T_FIBROBLAST	NCOR2--UBC	1	1	NCOR2	21671	chr12:124882665:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	57	79	0.03	0.02	0.0076	0.0076	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	TE159T_FIBROBLAST	0.02	0.03	0.0152	TRUE	30	26	0	16	0	FALSE	ACH-000175
LN215_CENTRAL_NERVOUS_SYSTEM	DHX40--VMP1	171	115	DHX40	11821	chr17:57665414:+	VMP1	39896	chr17:57917129:+	ONLY_REF_SPLICE	YES	70	273	0.8	0.51	2.0081	1.3505	NEIGHBORS[98847],DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	LN215_CENTRAL_NERVOUS_SYSTEM	0.51	0.8	3.3586	FALSE	0	0	0	1	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	HLA-C--MT-ND1	184	0	HLA-C	1507	chr6:31239401:-	MT-ND1	7513	chrM:3437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.1608	0	HLA-C->chr6:31236526-31239907:-,major_histocompatibility_complex,_class_I,_C,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	2.1608	FALSE	0	0	0	3	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	TIPARP--HTR3D	56	193	TIPARP	2562	chr3:156392585:+	HTR3D	19573	chr3:183752845:+	ONLY_REF_SPLICE	YES	16	0	0.94	1	0.6576	2.2665	TIPARP->TCDD_inducible_poly(ADP-ribose)_polymerase,chr3:156391024-156424559:+,HTR3D->5-hydroxytryptamine_receptor_3D,chr3:183749332-183757157:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.94	1	2.9241	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	103	4	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	1.2096	0.047	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.99	1	1.2566	TRUE	0	3	0	38	3	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DRG1--ZNF72P	77	22	DRG1	5637	chr22:31816411:+	ZNF72P	16808	chr22:16635539:+	INCL_NON_REF_SPLICE	YES	125	0	0.44	1	0.9043	0.2584	DRG1->chr22:31795509-31924726:+,developmentally_regulated_GTP_binding_protein_1,ZNF72P->chr22:16634898-16651926:+,zinc_finger_protein_72,_pseudogene	LN215_CENTRAL_NERVOUS_SYSTEM	0.44	1	1.1627	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	IQGAP1--ZNF774	68	50	IQGAP1	2279	chr15:90934105:+	ZNF774	45234	chr15:90897874:+	ONLY_REF_SPLICE	YES	431	5	0.21	0.96	0.7986	0.5872	LOCAL_REARRANGEMENT:+:[22126],IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,ZNF774->chr15:90895477-90909324:+,zinc_finger_protein_774	LN215_CENTRAL_NERVOUS_SYSTEM	0.21	0.96	1.3858	TRUE	0	4	0	2	4	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	55	41	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	48	96	0.67	0.5	0.6459	0.4815	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.5	0.67	1.1274	TRUE	181	1564	124	196	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	ZNRF3--AIFM3	59	16	ZNRF3	3718	chr22:29383189:+	AIFM3	22070	chr22:21322093:+	ONLY_REF_SPLICE	YES	3	2	0.96	0.97	0.6929	0.1879	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,AIFM3->apoptosis_inducing_factor,_mitochondria_associated_3,chr22:21319396-21335649:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.96	0.97	0.8808	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CTD-2544L4.1--TBC1D7	58	2	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5189	chr6:13328738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6811	0.0235	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.7046	TRUE	0	0	0	5	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MYH9--BRD1	39	76	MYH9	1212	chr22:36783852:-	BRD1	47179	chr22:50217979:-	ONLY_REF_SPLICE	YES	433	3	0.21	0.97	0.458	0.8925	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,BRD1->bromodomain_containing_1,chr22:50166931-50221160:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.21	0.97	1.3505	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	TIPARP--HTR3D	1	196	TIPARP	3544	chr3:156393567:+	HTR3D	19573	chr3:183752845:+	ONLY_REF_SPLICE	YES	16	0	0.92	1	0.0117	2.3017	TIPARP->TCDD_inducible_poly(ADP-ribose)_polymerase,chr3:156391024-156424559:+,HTR3D->5-hydroxytryptamine_receptor_3D,chr3:183749332-183757157:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.92	1	2.3134	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	45	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.5285	0.2231	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LN215_CENTRAL_NERVOUS_SYSTEM	0.98	1	0.7516	TRUE	508	994	45	981	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CHEK2--PRR14L	38	17	CHEK2	4758	chr22:29130391:-	PRR14L	41521	chr22:32081789:-	ONLY_REF_SPLICE	YES	36	8	0.6	0.87	0.4463	0.1996	CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,PRR14L->chr22:32072242-32146126:-,proline_rich_14_like	LN215_CENTRAL_NERVOUS_SYSTEM	0.6	0.87	0.6459	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	42	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4932	0.0117	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.5049	FALSE	462	80	0	856	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CTD-2544L4.1--TBC1D7	37	2	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5183	chr6:13328744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4345	0.0235	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.458	TRUE	0	0	0	5	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	27	25	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	11	0	0.83	1	0.3171	0.2936	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.6107	TRUE	0	5	0	45	5	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	TIPARP--HTR3D	16	63	TIPARP	2562	chr3:156392585:+	HTR3D	22413	chr3:183755809:+	ONLY_REF_SPLICE	YES	16	86	0.83	0.48	0.1879	0.7398	TIPARP->TCDD_inducible_poly(ADP-ribose)_polymerase,chr3:156391024-156424559:+,HTR3D->5-hydroxytryptamine_receptor_3D,chr3:183749332-183757157:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.48	0.83	0.9277	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DGCR2--LINC00634	27	17	DGCR2	2450	chr22:19076881:-	LINC00634	20544	chr22:42353676:+	ONLY_REF_SPLICE	YES	46	1	0.49	0.98	0.3171	0.1996	DGCR2->DiGeorge_syndrome_critical_region_gene_2,chr22:19023795-19109967:-,LINC00634->chr22:42348169-42354937:+,long_intergenic_non-protein_coding_RNA_634	LN215_CENTRAL_NERVOUS_SYSTEM	0.49	0.98	0.5167	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CTD-2544L4.1--TBC1D7	30	2	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5177	chr6:13328750:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3523	0.0235	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.3758	TRUE	0	0	0	5	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	ACO2--RP1-288L1.4	30	0	ACO2	1058	chr22:41865186:+	RP1-288L1.4	22838	chr22:35109964:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3523	0	ACO2->aconitase_2,chr22:41865129-41924993:+,RP1-288L1.4->chr22:35107899-35120910:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.3523	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	TOM1--TANGO2	22	32	TOM1	7385	chr22:35719907:+	TANGO2	25387	chr22:20024283:+	ONLY_REF_SPLICE	YES	37	17	0.59	0.76	0.2584	0.3758	TOM1->chr22:35695268-35743985:+,target_of_myb1_membrane_trafficking_protein,TANGO2->chr22:20004537-20053449:+,transport_and_golgi_organization_2_homolog	LN215_CENTRAL_NERVOUS_SYSTEM	0.59	0.76	0.6342	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	POLDIP3--CRYBB2P1	24	17	POLDIP3	3081	chr22:42998776:-	CRYBB2P1	29125	chr22:25916649:+	ONLY_REF_SPLICE	YES	81	7	0.34	0.85	0.2818	0.1996	POLDIP3->chr22:42979727-43010968:-,polymerase_(DNA)_delta_interacting_protein_3,CRYBB2P1->chr22:25844072-25916821:+,crystallin_beta_B2_pseudogene_1	LN215_CENTRAL_NERVOUS_SYSTEM	0.34	0.85	0.4814	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	27	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	269	5	0.1	0.85	0.3171	0.0235	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.1	0.85	0.3406	TRUE	519	3926	326	965	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CELSR1--FAM230B	22	19	CELSR1	35402	chr22:46765056:-	FAM230B	55770	chr22:21538389:+	INCL_NON_REF_SPLICE	YES	28	1	0.59	0.98	0.2584	0.2231	CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-,FAM230B->chr22:21522047-21546445:+,family_with_sequence_similarity_230_member_B_(non-protein_coding)	LN215_CENTRAL_NERVOUS_SYSTEM	0.59	0.98	0.4815	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	ZNRF3--AIFM3	23	10	ZNRF3	3718	chr22:29383189:+	AIFM3	23259	chr22:21327596:+	ONLY_REF_SPLICE	YES	3	17	0.92	0.66	0.2701	0.1174	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,AIFM3->apoptosis_inducing_factor,_mitochondria_associated_3,chr22:21319396-21335649:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.66	0.92	0.3875	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	25	1	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	1	4	0.96	0.87	0.2936	0.0117	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.87	0.96	0.3053	TRUE	0	1	0	26	1	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	SMDT1--SMC1B	13	36	SMDT1	1264	chr22:42475958:+	SMC1B	24638	chr22:45757864:-	ONLY_REF_SPLICE	YES	114	3	0.3	0.94	0.1527	0.4228	SMDT1->chr22:42475695-42480288:+,single-pass_membrane_protein_with_aspartate-rich_tail_1,SMC1B->chr22:45739944-45809500:-,structural_maintenance_of_chromosomes_1B	LN215_CENTRAL_NERVOUS_SYSTEM	0.3	0.94	0.5755	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	ACO2--RP1-288L1.4	21	0	ACO2	1058	chr22:41865186:+	RP1-288L1.4	21770	chr22:35120914:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2466	0	ACO2->aconitase_2,chr22:41865129-41924993:+,RP1-288L1.4->chr22:35107899-35120910:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.2466	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	20	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	11460	23697	0	0	0.2349	0.0235	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN215_CENTRAL_NERVOUS_SYSTEM	0	0	0.2584	FALSE	183	104	9	328	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	IQGAP1--ZNF774	14	24	IQGAP1	2279	chr15:90934105:+	ZNF774	47009	chr15:90902083:+	ONLY_REF_SPLICE	YES	431	15	0.08	0.72	0.1644	0.2818	LOCAL_REARRANGEMENT:+:[22126],IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,ZNF774->chr15:90895477-90909324:+,zinc_finger_protein_774	LN215_CENTRAL_NERVOUS_SYSTEM	0.08	0.72	0.4462	TRUE	0	2	0	2	2	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	POLDIP3--CRYBB2P1	12	32	POLDIP3	3081	chr22:42998776:-	CRYBB2P1	23032	chr22:25905150:+	ONLY_REF_SPLICE	YES	81	1	0.35	0.98	0.1409	0.3758	POLDIP3->chr22:42979727-43010968:-,polymerase_(DNA)_delta_interacting_protein_3,CRYBB2P1->chr22:25844072-25916821:+,crystallin_beta_B2_pseudogene_1	LN215_CENTRAL_NERVOUS_SYSTEM	0.35	0.98	0.5167	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	TIPARP--HTR3D	1	76	TIPARP	2562	chr3:156392585:+	HTR3D	20885	chr3:183754157:+	ONLY_REF_SPLICE	NO	16	74	0.83	0.51	0.0117	0.8925	TIPARP->TCDD_inducible_poly(ADP-ribose)_polymerase,chr3:156391024-156424559:+,HTR3D->5-hydroxytryptamine_receptor_3D,chr3:183749332-183757157:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.51	0.83	0.9042	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	AL589743.1--RP11-536C10.17	15	1	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	15	0	0.52	1	0.1762	0.0117	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.52	1	0.1879	TRUE	0	33	0	45	33	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	AP000525.9--LA16c-60G3.6	15	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	16	0	0.5	1	0.1762	0.0117	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.1879	TRUE	0	42	0	133	42	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	14	5	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	37	1	0.34	0.1644	0.0587	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.34	1	0.2231	TRUE	347	1186	183	220	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	ZNRF3--AIFM3	11	16	ZNRF3	3718	chr22:29383189:+	AIFM3	20771	chr22:21320794:+	ONLY_REF_SPLICE	YES	3	0	0.9	1	0.1292	0.1879	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,AIFM3->apoptosis_inducing_factor,_mitochondria_associated_3,chr22:21319396-21335649:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.3171	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	LZTR1--MB	11	14	LZTR1	14744	chr22:21350462:+	MB	28065	chr22:36013312:-	INCL_NON_REF_SPLICE	YES	125	6	0.17	0.81	0.1292	0.1644	LZTR1->ArcherDX_panel,FoundationOne_panel,chr22:21333751-21353327:+,leucine-zipper-like_transcription_regulator_1,MB->chr22:36002811-36033998:-,myoglobin	LN215_CENTRAL_NERVOUS_SYSTEM	0.17	0.81	0.2936	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	14	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	39	1	0.29	0.1644	0.0235	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.29	1	0.1879	TRUE	465	1949	224	605	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DRG1--ZNF72P	11	13	DRG1	5637	chr22:31816411:+	ZNF72P	16829	chr22:16635560:+	INCL_NON_REF_SPLICE	YES	125	0	0.16	1	0.1292	0.1527	DRG1->chr22:31795509-31924726:+,developmentally_regulated_GTP_binding_protein_1,ZNF72P->chr22:16634898-16651926:+,zinc_finger_protein_72,_pseudogene	LN215_CENTRAL_NERVOUS_SYSTEM	0.16	1	0.2819	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	FBLN1--RP11-782C8.2	12	6	FBLN1	19117	chr22:45946495:+	RP11-782C8.2	48974	chr1:143121165:-	ONLY_REF_SPLICE	YES	200	0	0.08	1	0.1409	0.0705	FBLN1->Oncogene{Bushman},chr22:45898118-45997015:+,fibulin_1,RP11-782C8.2->chr1:143118704-143211070:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CALM3--MT-ND4L	11	7	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2172	0	0.01	1	0.1292	0.0822	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN215_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.2114	FALSE	1	1	0	107	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	12	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	11637	24679	0	0	0.1409	0.0352	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN215_CENTRAL_NERVOUS_SYSTEM	0	0	0.1761	FALSE	183	104	9	328	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RP11-403B2.7--RP11-403B2.6	6	25	RP11-403B2.7	1254	chr15:20961259:-	RP11-403B2.6	7754	chr15:20965236:-	ONLY_REF_SPLICE	YES	3	0	0.91	1	0.0705	0.2936	GTEx_FI:{Brain=[count:17=pct:2.6],Esophagus=[count:15=pct:3.7],Blood_Vessel=[count:8=pct:2.2],Skin=[count:7=pct:2.2],Thyroid=[count:5=pct:2.8],Prostate=[count:4=pct:6.6],Lung=[count:4=pct:2.4],Heart=[count:3=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Blood=[count:2=pct:1.1],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},LOCAL_REARRANGEMENT:-:[3128],RP11-403B2.7->chr15:20935076-20961512:-,RP11-403B2.6->chr15:20964640-20980123:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.3641	TRUE	22	66	5	11	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	12	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1409	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.1409	TRUE	4	2	0	28	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	SMDT1--SMC1B	2	39	SMDT1	2405	chr22:42478069:+	SMC1B	24638	chr22:45757864:-	ONLY_REF_SPLICE	NO	69	3	0.37	0.93	0.0235	0.458	SMDT1->chr22:42475695-42480288:+,single-pass_membrane_protein_with_aspartate-rich_tail_1,SMC1B->chr22:45739944-45809500:-,structural_maintenance_of_chromosomes_1B	LN215_CENTRAL_NERVOUS_SYSTEM	0.37	0.93	0.4815	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	SMDT1--SMC1B	1	41	SMDT1	2405	chr22:42478069:+	SMC1B	23596	chr22:45758906:-	ONLY_REF_SPLICE	YES	69	0	0.38	1	0.0117	0.4815	SMDT1->chr22:42475695-42480288:+,single-pass_membrane_protein_with_aspartate-rich_tail_1,SMC1B->chr22:45739944-45809500:-,structural_maintenance_of_chromosomes_1B	LN215_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.4932	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DGCR2--LINC00634	6	17	DGCR2	2450	chr22:19076881:-	LINC00634	19405	chr22:42348289:+	INCL_NON_REF_SPLICE	YES	46	0	0.33	1	0.0705	0.1996	DGCR2->DiGeorge_syndrome_critical_region_gene_2,chr22:19023795-19109967:-,LINC00634->chr22:42348169-42354937:+,long_intergenic_non-protein_coding_RNA_634	LN215_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.2701	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DHX40--VMP1	1	37	DHX40	10663	chr17:57663594:+	VMP1	39896	chr17:57917129:+	ONLY_REF_SPLICE	YES	94	273	0.29	0.12	0.0117	0.4345	NEIGHBORS[98847],DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	LN215_CENTRAL_NERVOUS_SYSTEM	0.12	0.29	0.4462	FALSE	0	0	0	1	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	10	0	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1174	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.1174	TRUE	0	1	0	21	1	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-ND2	10	0	MT-ATP6	1098	chrM:8624:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1174	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.1174	FALSE	177	96	13	17	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CELSR1--FAM230B	5	19	CELSR1	35402	chr22:46765056:-	FAM230B	55365	chr22:21537984:+	INCL_NON_REF_SPLICE	YES	28	2	0.46	0.92	0.0587	0.2231	CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-,FAM230B->chr22:21522047-21546445:+,family_with_sequence_similarity_230_member_B_(non-protein_coding)	LN215_CENTRAL_NERVOUS_SYSTEM	0.46	0.92	0.2818	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	9	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1057	0.0117	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.1174	FALSE	292	1546	117	613	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DRG1--ZNF72P	9	0	DRG1	5637	chr22:31816411:+	ZNF72P	17876	chr22:16650210:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1057	0	DRG1->chr22:31795509-31924726:+,developmentally_regulated_GTP_binding_protein_1,ZNF72P->chr22:16634898-16651926:+,zinc_finger_protein_72,_pseudogene	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.1057	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	7	8	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	38	0	0.28	1	0.0822	0.0939	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.28	1	0.1761	FALSE	21	45	1	60	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	SMDT1--SMC1B	3	23	SMDT1	1215	chr22:42475909:+	SMC1B	24638	chr22:45757864:-	ONLY_REF_SPLICE	YES	100	3	0.21	0.9	0.0352	0.2701	SMDT1->chr22:42475695-42480288:+,single-pass_membrane_protein_with_aspartate-rich_tail_1,SMC1B->chr22:45739944-45809500:-,structural_maintenance_of_chromosomes_1B	LN215_CENTRAL_NERVOUS_SYSTEM	0.21	0.9	0.3053	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	ACO2--RP1-288L1.4	8	0	ACO2	1058	chr22:41865186:+	RP1-288L1.4	23914	chr22:35108888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0939	0	ACO2->aconitase_2,chr22:41865129-41924993:+,RP1-288L1.4->chr22:35107899-35120910:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0939	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MB21D2--FGF12	7	4	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	26	13	0.3	0.46	0.0822	0.047	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	LN215_CENTRAL_NERVOUS_SYSTEM	0.3	0.46	0.1292	FALSE	0	17	0	46	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	ATF2--CHN1	6	7	ATF2	1333	chr2:176032778:-	CHN1	34087	chr2:175711685:-	ONLY_REF_SPLICE	YES	95	60	0.12	0.18	0.0705	0.0822	NEIGHBORS[66881],ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-,CHN1->Oncogene{Bushman},chimerin_1,chr2:175664091-175870097:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.12	0.18	0.1527	FALSE	0	0	0	1	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CELSR1--FAM230B	7	3	CELSR1	35402	chr22:46765056:-	FAM230B	55986	chr22:21538605:+	INCL_NON_REF_SPLICE	YES	28	9	0.26	0.53	0.0822	0.0352	CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-,FAM230B->chr22:21522047-21546445:+,family_with_sequence_similarity_230_member_B_(non-protein_coding)	LN215_CENTRAL_NERVOUS_SYSTEM	0.26	0.53	0.1174	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	4	14	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	11	4	0.62	0.82	0.047	0.1644	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.62	0.82	0.2114	TRUE	0	1	0	20	1	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DRG1--ZNF72P	4	14	DRG1	5637	chr22:31816411:+	ZNF72P	16825	chr22:16635556:+	INCL_NON_REF_SPLICE	YES	125	0	0.13	1	0.047	0.1644	DRG1->chr22:31795509-31924726:+,developmentally_regulated_GTP_binding_protein_1,ZNF72P->chr22:16634898-16651926:+,zinc_finger_protein_72,_pseudogene	LN215_CENTRAL_NERVOUS_SYSTEM	0.13	1	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	6	6	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	115	0	0.09	1	0.0705	0.0705	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.09	1	0.141	FALSE	56	216	12	147	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DHX40--VMP1	2	21	DHX40	9582	chr17:57657240:+	VMP1	39896	chr17:57917129:+	ONLY_REF_SPLICE	YES	104	273	0.18	0.08	0.0235	0.2466	NEIGHBORS[98847],DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	LN215_CENTRAL_NERVOUS_SYSTEM	0.08	0.18	0.2701	FALSE	0	0	0	1	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MYH9--BRD1	6	5	MYH9	1212	chr22:36783852:-	BRD1	51886	chr22:50198008:-	ONLY_REF_SPLICE	YES	433	71	0.02	0.13	0.0705	0.0587	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,BRD1->bromodomain_containing_1,chr22:50166931-50221160:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.02	0.13	0.1292	TRUE	0	0	0	1	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	IQGAP1--ZNF774	1	24	IQGAP1	2279	chr15:90934105:+	ZNF774	45943	chr15:90898583:+	ONLY_REF_SPLICE	YES	431	16	0.05	0.61	0.0117	0.2818	LOCAL_REARRANGEMENT:+:[22126],IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,ZNF774->chr15:90895477-90909324:+,zinc_finger_protein_774	LN215_CENTRAL_NERVOUS_SYSTEM	0.05	0.61	0.2935	TRUE	0	4	0	2	4	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	LZTR1--MB	4	10	LZTR1	14744	chr22:21350462:+	MB	30394	chr22:36007153:-	INCL_NON_REF_SPLICE	YES	125	10	0.1	0.58	0.047	0.1174	LZTR1->ArcherDX_panel,FoundationOne_panel,chr22:21333751-21353327:+,leucine-zipper-like_transcription_regulator_1,MB->chr22:36002811-36033998:-,myoglobin	LN215_CENTRAL_NERVOUS_SYSTEM	0.1	0.58	0.1644	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	6	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0705	0.0235	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.094	FALSE	462	80	0	856	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	6	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0705	0.0235	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.094	FALSE	416	2512	207	587	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	6	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0705	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0705	TRUE	0	0	0	434	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	5	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0587	0.047	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.1057	FALSE	515	4851	409	746	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	5	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0.0352	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0939	FALSE	462	80	0	856	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	5	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	13	1	0.38	0.0587	0.0352	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.0939	TRUE	458	1351	185	561	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CHEK2--PRR14L	1	17	CHEK2	5887	chr22:29126408:-	PRR14L	41521	chr22:32081789:-	ONLY_REF_SPLICE	YES	38	8	0.32	0.69	0.0117	0.1996	CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,PRR14L->chr22:32072242-32146126:-,proline_rich_14_like	LN215_CENTRAL_NERVOUS_SYSTEM	0.32	0.69	0.2113	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	4	4	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	106	1	0.07	0.047	0.047	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.094	TRUE	15	36	8	26	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	IGFBP7--MT-ND4L	5	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	FALSE	1	0	0	30	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0587	FALSE	462	80	0	856	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	4	3	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11645	24260	0	0	0.047	0.0352	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN215_CENTRAL_NERVOUS_SYSTEM	0	0	0.0822	FALSE	183	104	9	328	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	3	6	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	11	18	0.45	0.33	0.0352	0.0705	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.33	0.45	0.1057	TRUE	0	1	0	24	1	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DGCR2--SEPT3	4	2	DGCR2	2450	chr22:19076881:-	SEPT3	22622	chr22:42381988:+	ONLY_REF_SPLICE	YES	46	49	0.12	0.11	0.047	0.0235	DGCR2->DiGeorge_syndrome_critical_region_gene_2,chr22:19023795-19109967:-,SEPT3->chr22:42372276-42394225:+,septin_3	LN215_CENTRAL_NERVOUS_SYSTEM	0.11	0.12	0.0705	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	4	2	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	10645	20133	0	0	0.047	0.0235	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN215_CENTRAL_NERVOUS_SYSTEM	0	0	0.0705	FALSE	183	104	9	328	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	3	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	90	0.75	0.09	0.0352	0.0705	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LN215_CENTRAL_NERVOUS_SYSTEM	0.09	0.75	0.1057	FALSE	16	356	14	466	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	3	5	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	5	0	0.62	1	0.0352	0.0587	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.62	1	0.0939	TRUE	0	0	0	21	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CHEK2--PRR14L	4	0	CHEK2	1654	chr22:29137757:-	PRR14L	41521	chr22:32081789:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.047	0	CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,PRR14L->chr22:32072242-32146126:-,proline_rich_14_like	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DGCR2--SEPT3	3	4	DGCR2	2450	chr22:19076881:-	SEPT3	21088	chr22:42377649:+	ONLY_REF_SPLICE	YES	46	4	0.13	0.64	0.0352	0.047	DGCR2->DiGeorge_syndrome_critical_region_gene_2,chr22:19023795-19109967:-,SEPT3->chr22:42372276-42394225:+,septin_3	LN215_CENTRAL_NERVOUS_SYSTEM	0.13	0.64	0.0822	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-ND2	4	0	MT-ATP6	1082	chrM:8608:+	MT-ND2	5507	chrM:5295:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.047	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.047	FALSE	177	96	13	17	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-ND2	4	0	MT-ATP6	1140	chrM:8666:+	MT-ND2	5395	chrM:5183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.047	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.047	FALSE	177	96	13	17	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MT-ND3--MT-ATP8	4	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.047	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.047	FALSE	351	233	23	137	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	4	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.047	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.047	TRUE	0	2	1	13	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	1	9	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	54	96	0.16	0.09	0.0117	0.1057	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.09	0.16	0.1174	TRUE	105	90	7	93	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	1	MT-ATP6	1079	chrM:8605:+	MT-CO1	5225	chrM:6447:+	INCL_NON_REF_SPLICE	YES	8346	20863	0	0	0.0352	0.0117	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN215_CENTRAL_NERVOUS_SYSTEM	0	0	0.0469	FALSE	183	104	9	328	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-ND2	3	1	MT-ATP6	1158	chrM:8684:+	MT-ND2	4816	chrM:4604:+	INCL_NON_REF_SPLICE	YES	14076	5608	0	0	0.0352	0.0117	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	LN215_CENTRAL_NERVOUS_SYSTEM	0	0	0.0469	FALSE	177	96	13	17	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	2	5	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	90	0.5	0.07	0.0235	0.0587	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LN215_CENTRAL_NERVOUS_SYSTEM	0.07	0.5	0.0822	FALSE	0	48	1	163	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	3	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0352	0.0117	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.0469	TRUE	6	15	3	35	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	ATF2--CHN1	1	8	ATF2	17534	chr2:175945388:-	CHN1	26246	chr2:175816930:-	ONLY_REF_SPLICE	NO	107	16	0.08	0.36	0.0117	0.0939	NEIGHBORS[66881],ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-,CHN1->Oncogene{Bushman},chimerin_1,chr2:175664091-175870097:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.08	0.36	0.1056	FALSE	0	0	0	7	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-ND2	3	0	MT-ATP6	1136	chrM:8662:+	MT-ND2	5498	chrM:5286:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0352	FALSE	177	96	13	17	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-ND2	3	0	MT-ATP6	1130	chrM:8656:+	MT-ND2	5517	chrM:5305:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0352	FALSE	177	96	13	17	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.89	1	0.0117	0.0822	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.0939	FALSE	407	2205	196	549	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	ACO2--RP1-288L1.4	2	2	ACO2	1384	chr22:41865512:+	RP1-288L1.4	22838	chr22:35109964:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0235	0.0235	ACO2->aconitase_2,chr22:41865129-41924993:+,RP1-288L1.4->chr22:35107899-35120910:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RP13-188A5.1--KLF8	2	2	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	4	71	0.5	0.05	0.0235	0.0235	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.05	0.5	0.047	TRUE	10	78	6	20	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	ATF2--CHN1	1	5	ATF2	1333	chr2:176032778:-	CHN1	36960	chr2:175689246:-	ONLY_REF_SPLICE	YES	95	61	0.06	0.09	0.0117	0.0587	NEIGHBORS[66881],ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-,CHN1->Oncogene{Bushman},chimerin_1,chr2:175664091-175870097:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.06	0.09	0.0704	FALSE	1	0	0	1	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0235	0.0117	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0352	FALSE	125	705	46	456	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RP11-268G12.1--CHMP1A	2	1	RP11-268G12.1	1247	chrX:27416868:-	CHMP1A	18697	chr16:89713739:-	ONLY_REF_SPLICE	YES	18	343	0.14	0.01	0.0235	0.0117	RP11-268G12.1->chrX:27193037-27417114:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.01	0.14	0.0352	FALSE	0	1	0	2	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	C22orf39--LARGE	2	0	C22orf39	8534	chr22:19396006:-	LARGE	62378	chr22:33562818:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,LARGE->chr22:33558212-34318829:-,like-glycosyltransferase	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	COA1--STK17A	2	0	COA1	1289	chr7:43769028:-	STK17A	27976	chr7:43635500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	NEIGHBORS_OVERLAP:-:+:[18330],COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,STK17A->chr7:43622357-43666385:+,serine/threonine_kinase_17a	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0235	FALSE	0	3	1	13	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CPA4--PARPBP	2	0	CPA4	7751	chr7:129946737:+	PARPBP	24902	chr12:102547647:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	CPA4->carboxypeptidase_A4,chr7:129932974-129964020:+,PARPBP->PARP1_binding_protein,chr12:102513956-102591298:+	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CTB-55O6.12--RP11-341G23.4	2	0	CTB-55O6.12	1045	chr19:14248035:+	RP11-341G23.4	10239	chr12:104160691:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	CTB-55O6.12->chr19:14247991-14282079:+,RP11-341G23.4->chr12:104140093-104162636:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	DMRTA1--RP11-399D6.2	2	0	DMRTA1	1892	chr9:22447731:+	RP11-399D6.2	11667	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+,RP11-399D6.2->chr9:22646199-22824212:+	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0235	TRUE	0	1	0	4	1	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	HNRNPD--RASGEF1B	2	0	HNRNPD	3442	chr4:83292681:-	RASGEF1B	15829	chr4:82836511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	HNRNPD->Oncogene{Bushman},chr4:83273651-83295656:-,heterogeneous_nuclear_ribonucleoprotein_D,RASGEF1B->RasGEF_domain_family_member_1B,chr4:82347547-82965397:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0235	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	2	0	KANSL1	4754	chr17:44270189:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0235	TRUE	0	0	0	1	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.42	1	0.0117	0.047	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.42	1	0.0587	FALSE	164	806	69	479	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RP11-155G15.2--RP11-1E3.1	1	3	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0117	0.0352	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	LN215_CENTRAL_NERVOUS_SYSTEM	1	1	0.0469	FALSE	46	201	11	112	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--BCAT1	1	2	RP11-444D3.1	1253	chr12:24715272:-	BCAT1	19076	chr12:25034345:-	ONLY_REF_SPLICE	YES	0	75	1	0.04	0.0117	0.0235	RP11-444D3.1->chr12:24366190-24715524:-,BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0352	TRUE	0	0	0	2	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	B3GALNT2--ENAH	1	1	B3GALNT2	3612	chr1:235657991:-	ENAH	24254	chr1:225755116:-	ONLY_REF_SPLICE	YES	38	129	0.05	0.02	0.0117	0.0117	B3GALNT2->beta-1,3-N-acetylgalactosaminyltransferase_2,chr1:235613238-235667781:-,ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila)	LN215_CENTRAL_NERVOUS_SYSTEM	0.02	0.05	0.0234	TRUE	0	0	0	1	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	C3orf58--SOX2-OT	1	1	C3orf58	2192	chr3:143691831:+	SOX2-OT	34533	chr3:181432973:+	ONLY_REF_SPLICE	YES	33	2	0.06	0.5	0.0117	0.0117	C3orf58->chr3:143690640-143767561:+,chromosome_3_open_reading_frame_58,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.06	0.5	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	C3orf58--SOX2-OT	1	1	C3orf58	2192	chr3:143691831:+	SOX2-OT	37906	chr3:181457357:+	ONLY_REF_SPLICE	YES	33	2	0.06	0.5	0.0117	0.0117	C3orf58->chr3:143690640-143767561:+,chromosome_3_open_reading_frame_58,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.06	0.5	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	C3orf58--SOX2-OT	1	1	C3orf58	5273	chr3:143704688:+	SOX2-OT	37906	chr3:181457357:+	ONLY_REF_SPLICE	NO	88	2	0.02	0.5	0.0117	0.0117	C3orf58->chr3:143690640-143767561:+,chromosome_3_open_reading_frame_58,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.02	0.5	0.0234	TRUE	0	0	0	1	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CHM--TOMM20	1	1	CHM	2383	chrX:85282495:-	TOMM20	31119	chr1:235277225:-	ONLY_REF_SPLICE	YES	111	655	0.02	0	0.0117	0.0117	CHM->CHM,_Rab_escort_protein_1,chrX:85116185-85302566:-,TOMM20->chr1:235272651-235292251:-,translocase_of_outer_mitochondrial_membrane_20	LN215_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CMC2--CDYL2	1	1	CMC2	2457	chr16:81040339:-	CDYL2	19859	chr16:80719026:-	ONLY_REF_SPLICE	YES	285	9	0.01	0.18	0.0117	0.0117	CMC2->C-x9-C_motif_containing_2,chr16:81009698-81053875:-,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	LN215_CENTRAL_NERVOUS_SYSTEM	0.01	0.18	0.0234	FALSE	0	0	0	5	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	1	1	COL8A1	12080	chr3:99463865:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	396	363	0.01	0.01	0.0117	0.0117	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	LN215_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0234	FALSE	4	4	0	17	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	3267	chr5:95654248:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	37	1	0.05	0.0117	0.0117	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.0234	TRUE	0	4	0	5	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	GRAMD4--ZXDC	1	1	GRAMD4	7908	chr22:47057339:+	ZXDC	36190	chr3:126160789:-	ONLY_REF_SPLICE	YES	23	54	0.08	0.04	0.0117	0.0117	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+,ZXDC->ZXD_family_zinc_finger_C,chr3:126156444-126194762:-	LN215_CENTRAL_NERVOUS_SYSTEM	0.04	0.08	0.0234	TRUE	0	0	0	1	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	MKLN1--CALU	1	1	MKLN1	5544	chr7:131012756:+	CALU	43111	chr7:128398925:+	ONLY_REF_SPLICE	YES	32	1881	0.06	0	0.0117	0.0117	MKLN1->chr7:130794855-131181395:+,muskelin_1,CALU->calumenin,chr7:128379346-128411861:+	LN215_CENTRAL_NERVOUS_SYSTEM	0	0.06	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	POLE4--RP11-355F16.1	1	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	NO	223	0	0.01	1	0.0117	0.0117	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0234	FALSE	5	7	0	37	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	PSMA3--ACTR10	1	1	PSMA3	2731	chr14:58714550:+	ACTR10	27735	chr14:58697117:+	ONLY_REF_SPLICE	YES	625	181	0	0.01	0.0117	0.0117	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[9799],PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3,ACTR10->actin-related_protein_10_homolog,chr14:58666798-58701750:+	LN215_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0234	FALSE	0	1	0	2	1	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	64	1	0.03	0.0117	0.0117	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN215_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0234	TRUE	64	13	3	59	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	RPN2--TRPC4AP	1	1	RPN2	11450	chr20:35842268:+	TRPC4AP	35018	chr20:33603942:-	ONLY_REF_SPLICE	YES	1935	508	0	0	0.0117	0.0117	RPN2->chr20:35806813-35870022:+,ribophorin_II,TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein	LN215_CENTRAL_NERVOUS_SYSTEM	0	0	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	SIL1--CTNNA1	1	1	SIL1	20861	chr5:138362490:-	CTNNA1	56346	chr5:138240038:+	ONLY_REF_SPLICE	NO	484	1157	0	0	0.0117	0.0117	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=6;pct=0.07%;dist=Cells_-_Transformed_fibroblasts=2,Artery_-_Aorta=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1},{Klijn_CCL:Skin=1},LOCAL_INVERSION:-:+:[11686],SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	LN215_CENTRAL_NERVOUS_SYSTEM	0	0	0.0234	FALSE	0	1	0	1	0	FALSE	ACH-000328
LN215_CENTRAL_NERVOUS_SYSTEM	UBL5--MED19	1	1	UBL5	1498	chr19:9939065:+	MED19	8317	chr11:57471868:-	ONLY_REF_SPLICE	NO	1040	148	0	0.01	0.0117	0.0117	UBL5->chr19:9938568-9940791:+,ubiquitin_like_5,MED19->chr11:57471186-57479693:-,mediator_complex_subunit_19	LN215_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0234	FALSE	0	0	0	4	0	FALSE	ACH-000328
PANC0813_PANCREAS	PRSS3P1--KRT8	138	0	PRSS3P1	3295	chr7:142470637:+	KRT8	17295	chr12:53293794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.9003	0	PRSS3P1->chr7:142468264-142471794:+,protease,_serine_3_pseudogene_1,KRT8->chr12:53290977-53343738:-,keratin_8	PANC0813_PANCREAS	1	1	1.9003	TRUE	1	0	0	3	0	TRUE	ACH-000417
PANC0813_PANCREAS	TIMM23B--LINC00843	68	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9364	0.1928	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PANC0813_PANCREAS	0.99	1	1.1292	TRUE	508	994	45	981	0	FALSE	ACH-000417
PANC0813_PANCREAS	MT-TA--MT-TC	41	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5646	0.0964	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0813_PANCREAS	1	1	0.661	FALSE	462	80	0	856	0	FALSE	ACH-000417
PANC0813_PANCREAS	TIMM23--RP11-464F9.1	36	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	218	4	0.16	0.91	0.4957	0.0551	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PANC0813_PANCREAS	0.16	0.91	0.5508	TRUE	519	3926	326	965	0	FALSE	ACH-000417
PANC0813_PANCREAS	C15orf57--CBX3	14	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	72	21	0.29	0.59	0.1928	0.2203	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PANC0813_PANCREAS	0.29	0.59	0.4131	TRUE	267	562	48	632	0	FALSE	ACH-000417
PANC0813_PANCREAS	MT-ND6--MT-TE	16	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2203	0.0551	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0813_PANCREAS	1	1	0.2754	FALSE	499	1288	110	792	0	FALSE	ACH-000417
PANC0813_PANCREAS	PWWP2B--INPP5A	14	5	PWWP2B	3848	chr10:134219793:+	INPP5A	11046	chr10:134459372:+	ONLY_REF_SPLICE	YES	25	4	0.43	0.83	0.1928	0.0689	GTEx_FI:{Skin=[count:2=pct:0.6]},PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,INPP5A->chr10:134351324-134596979:+,inositol_polyphosphate-5-phosphatase_A	PANC0813_PANCREAS	0.43	0.83	0.2617	TRUE	0	0	0	1	0	TRUE	ACH-000417
PANC0813_PANCREAS	MT-ND6--MT-TE	11	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1515	0.1652	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0813_PANCREAS	1	1	0.3167	FALSE	499	1288	110	792	0	FALSE	ACH-000417
PANC0813_PANCREAS	MT-CO3--MT-ATP6	3	39	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	4	28	0.91	0.6	0.0413	0.537	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0813_PANCREAS	0.6	0.91	0.5783	FALSE	189	492	56	216	0	FALSE	ACH-000417
PANC0813_PANCREAS	MT-ND6--MT-TE	11	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1515	0.0689	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0813_PANCREAS	1	1	0.2204	FALSE	499	1288	110	792	0	FALSE	ACH-000417
PANC0813_PANCREAS	MT-CO3--MT-ATP6	3	34	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.95	0.0413	0.4682	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0813_PANCREAS	0.95	1	0.5095	FALSE	189	492	56	216	0	FALSE	ACH-000417
PANC0813_PANCREAS	ATP6V0C--MT-CO2	9	0	ATP6V0C	2886	chr16:2569357:+	MT-CO2	6967	chrM:7804:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1239	0	ATP6V0C->ATPase_H+_transporting_V0_subunit_c,chr16:2563871-2570219:+,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PANC0813_PANCREAS	1	1	0.1239	FALSE	0	0	0	9	0	FALSE	ACH-000417
PANC0813_PANCREAS	NPM1P24--SET	7	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	24	1686	0.25	0	0.0964	0.0138	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PANC0813_PANCREAS	0	0.25	0.1102	TRUE	0	0	0	434	0	FALSE	ACH-000417
PANC0813_PANCREAS	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0964	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0813_PANCREAS	1	1	0.0964	FALSE	499	1288	110	792	0	FALSE	ACH-000417
PANC0813_PANCREAS	MT-CO3--MT-ATP6	6	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0826	0.0275	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0813_PANCREAS	0.89	1	0.1101	FALSE	189	492	56	216	0	FALSE	ACH-000417
PANC0813_PANCREAS	MT-TA--MT-TC	4	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0.1102	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0813_PANCREAS	1	1	0.1653	FALSE	462	80	0	856	0	FALSE	ACH-000417
PANC0813_PANCREAS	C15orf57--CBX3	3	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	71	21	0.15	0.38	0.0413	0.1377	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PANC0813_PANCREAS	0.15	0.38	0.179	TRUE	267	562	48	632	0	FALSE	ACH-000417
PANC0813_PANCREAS	MT-CO3--MT-ATP6	5	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PANC0813_PANCREAS	1	1	0.0689	FALSE	189	492	56	216	0	FALSE	ACH-000417
PANC0813_PANCREAS	OS9--ANP32E	5	0	OS9	6854	chr12:58112048:+	ANP32E	19196	chr1:150199041:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	GTEx&tcga_normals:3/3694=0.08%,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin,ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-	PANC0813_PANCREAS	1	1	0.0689	TRUE	0	0	0	1	0	TRUE	ACH-000417
PANC0813_PANCREAS	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0813_PANCREAS	1	1	0.0689	FALSE	0	0	0	189	0	FALSE	ACH-000417
PANC0813_PANCREAS	MT-TA--MT-TC	3	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0.0964	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0813_PANCREAS	1	1	0.1377	FALSE	462	80	0	856	0	FALSE	ACH-000417
PANC0813_PANCREAS	NEK9--SOS2	4	2	NEK9	22305	chr14:75553721:-	SOS2	40643	chr14:50628327:-	ONLY_REF_SPLICE	YES	145	27	0.04	0.18	0.0551	0.0275	NEK9->NIMA_related_kinase_9,chr14:75548822-75594047:-,SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-	PANC0813_PANCREAS	0.04	0.18	0.0826	TRUE	0	0	0	1	0	TRUE	ACH-000417
PANC0813_PANCREAS	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0.0138	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0813_PANCREAS	1	1	0.0689	FALSE	462	80	0	856	0	FALSE	ACH-000417
PANC0813_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0813_PANCREAS	1	1	0.0551	FALSE	499	1288	110	792	0	FALSE	ACH-000417
PANC0813_PANCREAS	NRIP1--AF127936.7	3	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.21	1	0.0413	0.0551	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0813_PANCREAS	0.21	1	0.0964	FALSE	125	705	46	456	0	FALSE	ACH-000417
PANC0813_PANCREAS	LGALS3BP--KRT18	3	2	LGALS3BP	4100	chr17:76972120:-	KRT18	11864	chr12:53342905:+	INCL_NON_REF_SPLICE	YES	1840	5	0	0.5	0.0413	0.0275	LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,KRT18->chr12:53342655-53346685:+,keratin_18	PANC0813_PANCREAS	0	0.5	0.0688	FALSE	0	0	0	9	0	FALSE	ACH-000417
PANC0813_PANCREAS	NPM1P24--SET	3	2	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	24	1653	0.17	0	0.0413	0.0275	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PANC0813_PANCREAS	0	0.17	0.0688	FALSE	0	0	0	434	0	FALSE	ACH-000417
PANC0813_PANCREAS	RP11-66B24.4--FTH1	3	1	RP11-66B24.4	7292	chr15:101436154:-	FTH1	12578	chr11:61735056:-	INCL_NON_REF_SPLICE	YES	7	0	0.36	1	0.0413	0.0138	RP11-66B24.4->chr15:101433945-101459488:-,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	PANC0813_PANCREAS	0.36	1	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000417
PANC0813_PANCREAS	NRIP1--AF127936.7	2	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.5	1	0.0275	0.0413	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0813_PANCREAS	0.5	1	0.0688	FALSE	292	1546	117	613	0	FALSE	ACH-000417
PANC0813_PANCREAS	NRIP1--AF127936.7	1	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	32	0	0.16	1	0.0138	0.0689	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0813_PANCREAS	0.16	1	0.0827	FALSE	164	806	69	479	0	FALSE	ACH-000417
PANC0813_PANCREAS	TIMM23--RP11-464F9.1	1	4	TIMM23	5841	chr10:51610393:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	252	4	0.02	0.56	0.0138	0.0551	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PANC0813_PANCREAS	0.02	0.56	0.0689	TRUE	1	12	0	11	0	FALSE	ACH-000417
PANC0813_PANCREAS	PWWP2B--INPP5A	1	2	PWWP2B	3545	chr10:134219490:+	INPP5A	11046	chr10:134459372:+	ONLY_REF_SPLICE	YES	20	4	0.13	0.43	0.0138	0.0275	GTEx_FI:{Skin=[count:2=pct:0.6]},PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+,INPP5A->chr10:134351324-134596979:+,inositol_polyphosphate-5-phosphatase_A	PANC0813_PANCREAS	0.13	0.43	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000417
PANC0813_PANCREAS	DCBLD2--ARHGAP29	1	1	DCBLD2	12433	chr3:98536613:-	ARHGAP29	46751	chr1:94655639:-	ONLY_REF_SPLICE	YES	1650	361	0	0.01	0.0138	0.0138	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-	PANC0813_PANCREAS	0	0.01	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000417
PANC0813_PANCREAS	LAMB3--DAZAP2	1	1	LAMB3	12310	chr1:209800212:-	DAZAP2	24455	chr12:51632670:+	ONLY_REF_SPLICE	NO	617	4	0	0.33	0.0138	0.0138	LAMB3->chr1:209788215-209825811:-,laminin_subunit_beta_3,DAZAP2->DAZ_associated_protein_2,chr12:51632076-51665146:+	PANC0813_PANCREAS	0	0.33	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000417
RH41_SOFT_TISSUE	PAX3--FOXO1	275	107	PAX3	9270	chr2:223084859:-	FOXO1	18665	chr13:41134997:-	ONLY_REF_SPLICE	YES	0	8	1	0.98	2.6232	1.0207	Cosmic{samples=1159,mutations=380,papers=68},Mitelman{SA_rhabd_alv=2},chimerdb_omim:{alveolarrhabdomyosarcomas},chimerdb_omim:{alveolarrhabdomyosarcoma},chimerdb_omim:{pediatricalveolarrhabdomyosarcoma},chimerdb_pubmed{pediatric cancer alveolar rhabdomyosarcoma,pediatric solid tumor alveolar rhabdomyosarcoma,Rhabdomyosarcomas,rhabdomyosarcoma tumours,Alveolar rhabdomyosarcomas,Rhabdomyosarcoma, alveolar,malignant tumors,Adult cutaneous alveolar rhabdomyosarcoma,alveolar rhabdomyosarcoma (aRMS),alveolar rhabdomyosarcomas (RMS),musclederived tumor alveolar rhabdomyosarcoma,Rhabdomyosarcoma,alveolar rhabdomyosarcomas (ARMSs),alveolar rhabdomyosarcoma,Rhabdomyosarcomas (RMS),alveolar rhabdomyosarcoma tumors (ARMS),Alveolar rhabdomyosarcoma (RMS),alveolar rhabdomyosarcoma (RMS),alveolar Rhabdomyosarcoma (ARMS),alveolar Rhabdomyosarcoma (aRMS),Alveolar rhabdomyosarcoma (ARMS),alveolar rhabdomyosarcoma (ARMS),Embryonal Rhabdomyosarcoma (eRMS),Alveolar rhabdomyosarcoma (aRMS),rhabdomyosarcoma(RMS),rhabdomyosarcoma,human rhabdomyosarcoma,sarcoma,alveolar rhabdomyosarcom,Alveolar rhabdomyosarcoma},{Klijn_CCL:Sarcomatoid=1},PAX3->Oncogene{Bushman},chr2:223064607-223163715:-,paired_box_3,FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1	RH41_SOFT_TISSUE	0.98	1	3.6439	TRUE	0	0	0	2	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	PXDN--MYT1L	258	141	PXDN	1597	chr2:1748028:-	MYT1L	70748	chr2:1844615:-	ONLY_REF_SPLICE	YES	1439	0	0.22	1	2.461	1.345	LOCAL_REARRANGEMENT:-:[44261],PXDN->chr2:1635659-1748624:-,peroxidasin,MYT1L->chr2:1792885-2335032:-,myelin_transcription_factor_1_like	RH41_SOFT_TISSUE	0.22	1	3.806	TRUE	0	1	0	1	1	TRUE	ACH-000100
RH41_SOFT_TISSUE	MT-ND4--ACTC1	138	1	MT-ND4	1947	chrM:11706:+	ACTC1	6685	chr15:35087034:-	INCL_NON_REF_SPLICE	NO	11768	229	0.01	0.38	1.3164	0.0095	MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,ACTC1->actin,_alpha,_cardiac_muscle_1,chr15:35080297-35088340:-	RH41_SOFT_TISSUE	0.01	0.38	1.3259	FALSE	56	6	2	1	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	TIMM23B--LINC00843	131	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.2496	0.2576	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RH41_SOFT_TISSUE	0.99	1	1.5072	TRUE	508	994	45	981	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	TIMM23--RP11-464F9.1	78	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	192	3	0.29	0.96	0.744	0.0191	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RH41_SOFT_TISSUE	0.29	0.96	0.7631	TRUE	519	3926	326	965	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	FNBP1L--FXYD7	67	6	FNBP1L	15073	chr1:94012998:+	FXYD7	25053	chr19:35639597:+	ONLY_REF_SPLICE	YES	55	0	0.57	1	0.6391	0.0572	FNBP1L->chr1:93913688-94020218:+,formin_binding_protein_1_like,FXYD7->FXYD_domain_containing_ion_transport_regulator_7,chr19:35634154-35645204:+	RH41_SOFT_TISSUE	0.57	1	0.6963	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	ZNF654--HMGB2	64	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6105	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RH41_SOFT_TISSUE	1	1	0.6105	TRUE	0	0	0	518	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	ALDH1A3--ASB7	51	12	ALDH1A3	5390	chr15:101425576:+	ASB7	28477	chr15:101188528:+	ONLY_REF_SPLICE	YES	41	33	0.61	0.66	0.4865	0.1145	ALDH1A3->aldehyde_dehydrogenase_1_family_member_A3,chr15:101417919-101456831:+,ASB7->ankyrin_repeat_and_SOCS_box_containing_7,chr15:101142739-101191910:+	RH41_SOFT_TISSUE	0.61	0.66	0.601	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	COL6A2--ARNT2	46	0	COL6A2	1077	chr21:47518087:+	ARNT2	36648	chr15:80843540:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4388	0	COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,ARNT2->aryl_hydrocarbon_receptor_nuclear_translocator_2,chr15:80696692-80890278:+	RH41_SOFT_TISSUE	1	1	0.4388	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	MT-TA--MT-TC	43	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4102	0.0286	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RH41_SOFT_TISSUE	1	1	0.4388	FALSE	462	80	0	856	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	C15orf57--CBX3	21	15	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	34	16	0.51	0.69	0.2003	0.1431	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RH41_SOFT_TISSUE	0.51	0.69	0.3434	TRUE	267	562	48	632	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-CO3--MT-ATP6	9	57	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	8	7	0.89	0.9	0.0859	0.5437	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RH41_SOFT_TISSUE	0.89	0.9	0.6296	FALSE	189	492	56	216	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	RP11-680G10.1--GSE1	20	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.81	0.1908	0.0859	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RH41_SOFT_TISSUE	0.81	1	0.2767	TRUE	458	1351	185	561	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	OR51S1--TP53I11	22	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2099	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	RH41_SOFT_TISSUE	1	1	0.2099	TRUE	402	216	10	229	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	RP11-120I21.2--RALYL	19	11	RP11-120I21.2	3279	chr8:84996478:+	RALYL	12120	chr8:85441534:+	ONLY_REF_SPLICE	YES	42	0	0.42	1	0.1812	0.1049	NEIGHBORS[42504],RP11-120I21.2->chr8:84824948-85052518:+,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	RH41_SOFT_TISSUE	0.42	1	0.2861	FALSE	0	8	1	4	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-CO3--MT-ATP6	6	61	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	11	0	0.86	1	0.0572	0.5819	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RH41_SOFT_TISSUE	0.86	1	0.6391	FALSE	189	492	56	216	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	RP11-123O10.4--GRIP1	19	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	8	1	0.76	0.1812	0.0572	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RH41_SOFT_TISSUE	0.76	1	0.2384	FALSE	416	2512	207	587	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-ND6--MT-TE	19	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1812	0.0382	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH41_SOFT_TISSUE	1	1	0.2194	FALSE	499	1288	110	792	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	RP11-680G10.1--GSE1	19	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	51	1	0.3	0.1812	0.0286	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RH41_SOFT_TISSUE	0.3	1	0.2098	TRUE	465	1949	224	605	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	RPSAP52--HMGA2	19	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	7	324	0.75	0.06	0.1812	0.0191	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	RH41_SOFT_TISSUE	0.06	0.75	0.2003	FALSE	0	59	0	125	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	HSP90AB1--MT-RNR2	19	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2086	0	0.01	1	0.1812	0.0095	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RH41_SOFT_TISSUE	0.01	1	0.1907	FALSE	13	9	0	364	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-CO3--MT-ATP6	4	57	MT-CO3	1220	chrM:9426:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	11	7	0.85	0.9	0.0382	0.5437	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RH41_SOFT_TISSUE	0.85	0.9	0.5819	FALSE	189	492	56	216	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-ND6--MT-TE	12	20	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.1145	0.1908	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH41_SOFT_TISSUE	0.91	1	0.3053	FALSE	499	1288	110	792	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	R3HDM2--FAM19A2	15	6	R3HDM2	2356	chr12:57789532:-	FAM19A2	53467	chr12:62417560:-	ONLY_REF_SPLICE	YES	17	1	0.55	0.95	0.1431	0.0572	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2	RH41_SOFT_TISSUE	0.55	0.95	0.2003	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	RPSAP52--IFNG-AS1	15	2	RPSAP52	1132	chr12:66220623:-	IFNG-AS1	7280	chr12:68389721:+	ONLY_REF_SPLICE	YES	7	0	0.71	1	0.1431	0.0191	RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,IFNG-AS1->IFNG_antisense_RNA_1,chr12:68383225-68628466:+	RH41_SOFT_TISSUE	0.71	1	0.1622	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	MAF--RP11-679B19.2	14	4	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1335	0.0382	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	RH41_SOFT_TISSUE	1	1	0.1717	TRUE	48	25	3	38	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-CO3--MT-ATP6	3	48	MT-CO3	1113	chrM:9319:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.0286	0.4579	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RH41_SOFT_TISSUE	0.96	1	0.4865	FALSE	189	492	56	216	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	ZNF654--HMGB2	15	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1431	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RH41_SOFT_TISSUE	1	1	0.1431	TRUE	0	0	0	518	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-CO3--MT-ATP6	3	46	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	2	2	0.96	0.96	0.0286	0.4388	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RH41_SOFT_TISSUE	0.96	0.96	0.4674	FALSE	189	492	56	216	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-CO3--MT-ATP6	3	45	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.89	0.0286	0.4293	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RH41_SOFT_TISSUE	0.89	1	0.4579	FALSE	189	492	56	216	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	NRIP1--AF127936.7	14	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.75	1	0.1335	0.0095	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RH41_SOFT_TISSUE	0.75	1	0.143	FALSE	292	1546	117	613	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	RP11-120I21.2--RHPN2	12	6	RP11-120I21.2	3279	chr8:84996478:+	RHPN2	8746	chr19:33535270:-	ONLY_REF_SPLICE	YES	42	8	0.3	0.69	0.1145	0.0572	RP11-120I21.2->chr8:84824948-85052518:+,RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2	RH41_SOFT_TISSUE	0.3	0.69	0.1717	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	C1orf194--UQCR10	12	0	C1orf194	3284	chr1:109650635:-	UQCR10	8361	chr22:30163372:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1145	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.41%,GTEx_FI:{Testis=[count:16=pct:15.2],Pituitary=[count:4=pct:7.7],Lung=[count:4=pct:2.4],Brain=[count:3=pct:0.5],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Fallopian_Tube=[count:1=pct:16.7],Thyroid=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=13;pct=0.15%;dist=Testis=12,Adipose_-_Subcutaneous=1},C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	RH41_SOFT_TISSUE	1	1	0.1145	TRUE	26	6	0	14	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	ENOX1--PAX3	11	3	ENOX1	17550	chr13:43843606:-	PAX3	26867	chr2:223161932:-	ONLY_REF_SPLICE	YES	23	86	0.38	0.14	0.1049	0.0286	ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1,PAX3->Oncogene{Bushman},chr2:223064607-223163715:-,paired_box_3	RH41_SOFT_TISSUE	0.14	0.38	0.1335	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	RAB31--SS18	10	6	RAB31	1280	chr18:9708441:+	SS18	25285	chr18:23667541:-	ONLY_REF_SPLICE	YES	43	184	0.27	0.08	0.0954	0.0572	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,SS18->Oncogene{Bushman},SS18,_nBAF_chromatin_remodeling_complex_subunit,chr18:23596578-23671181:-	RH41_SOFT_TISSUE	0.08	0.27	0.1526	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	MT-ND6--MT-TE	3	29	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0286	0.2766	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH41_SOFT_TISSUE	0.91	1	0.3052	FALSE	499	1288	110	792	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	SAMD5--SASH1	10	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0954	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	RH41_SOFT_TISSUE	1	1	0.0954	TRUE	53	396	64	110	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	RP11-120I21.2--RALYL	6	12	RP11-120I21.2	3279	chr8:84996478:+	RALYL	11088	chr8:85258354:+	ONLY_REF_SPLICE	YES	42	0	0.3	1	0.0572	0.1145	NEIGHBORS[42504],RP11-120I21.2->chr8:84824948-85052518:+,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	RH41_SOFT_TISSUE	0.3	1	0.1717	FALSE	0	6	0	2	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	RPSAP52--IFNG-AS1	8	1	RPSAP52	1132	chr12:66220623:-	IFNG-AS1	8413	chr12:68399870:+	ONLY_REF_SPLICE	YES	7	0	0.56	1	0.0763	0.0095	RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,IFNG-AS1->IFNG_antisense_RNA_1,chr12:68383225-68628466:+	RH41_SOFT_TISSUE	0.56	1	0.0858	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	ALS2--STRADB	8	0	ALS2	1313	chr2:202645600:-	STRADB	48422	chr2:202319469:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0763	0	ALS2->ALS2,_alsin_Rho_guanine_nucleotide_exchange_factor,chr2:202565277-202645912:-,STRADB->STE20-related_kinase_adaptor_beta,chr2:202252581-202345569:+	RH41_SOFT_TISSUE	1	1	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	GNB1--SNX29P2	8	0	GNB1	1237	chr1:1822259:-	SNX29P2	24848	chr16:29313608:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0763	0	GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-,SNX29P2->chr16:29262829-29519817:+,chr16:29362067-29381593:+,sorting_nexin_29_pseudogene_2	RH41_SOFT_TISSUE	1	1	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	MT-ND6--MT-TE	3	20	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0286	0.1908	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH41_SOFT_TISSUE	0.92	1	0.2194	FALSE	499	1288	110	792	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-ND6--MT-TE	5	11	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0.1049	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH41_SOFT_TISSUE	1	1	0.1526	FALSE	499	1288	110	792	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-TA--MT-TC	7	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0668	0.0286	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RH41_SOFT_TISSUE	1	1	0.0954	FALSE	462	80	0	856	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	NRIP1--AF127936.7	6	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.5	1	0.0572	0.0668	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RH41_SOFT_TISSUE	0.5	1	0.124	FALSE	164	806	69	479	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-CO3--MT-ATP6	5	10	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0477	0.0954	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RH41_SOFT_TISSUE	0.88	1	0.1431	FALSE	189	492	56	216	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	OBSL1--MYCBP2-AS1	7	2	OBSL1	18282	chr2:220416251:-	MYCBP2-AS1	22087	chr13:77649653:+	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.0668	0.0191	OBSL1->chr2:220415451-220436581:-,obscurin-like_1,MYCBP2-AS1->MYCBP2_antisense_RNA_1,chr13:77649649-77672677:+	RH41_SOFT_TISSUE	0.6	1	0.0859	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	R3HDM2--FAM19A2	6	5	R3HDM2	2356	chr12:57789532:-	FAM19A2	56740	chr12:62261207:-	ONLY_REF_SPLICE	YES	17	6	0.39	0.65	0.0572	0.0477	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2	RH41_SOFT_TISSUE	0.39	0.65	0.1049	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	MT-CO3--MT-ATP6	7	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0668	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RH41_SOFT_TISSUE	1	1	0.0668	FALSE	189	492	56	216	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-ND6--MT-TE	3	16	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0.1526	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH41_SOFT_TISSUE	1	1	0.1812	FALSE	499	1288	110	792	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	FRMD6--SLIT1	6	3	FRMD6	17389	chr14:52171653:+	SLIT1	58677	chr10:98794299:-	ONLY_REF_SPLICE	YES	22	0	0.29	1	0.0572	0.0286	FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,SLIT1->chr10:98757795-98945677:-,slit_guidance_ligand_1	RH41_SOFT_TISSUE	0.29	1	0.0858	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	PAX3--FOXO1	6	3	PAX3	4967	chr2:223158886:-	FOXO1	18665	chr13:41134997:-	ONLY_REF_SPLICE	YES	87	8	0.09	0.53	0.0572	0.0286	Cosmic{samples=1159,mutations=380,papers=68},Mitelman{SA_rhabd_alv=2},chimerdb_omim:{alveolarrhabdomyosarcomas},chimerdb_omim:{alveolarrhabdomyosarcoma},chimerdb_omim:{pediatricalveolarrhabdomyosarcoma},chimerdb_pubmed{pediatric cancer alveolar rhabdomyosarcoma,pediatric solid tumor alveolar rhabdomyosarcoma,Rhabdomyosarcomas,rhabdomyosarcoma tumours,Alveolar rhabdomyosarcomas,Rhabdomyosarcoma, alveolar,malignant tumors,Adult cutaneous alveolar rhabdomyosarcoma,alveolar rhabdomyosarcoma (aRMS),alveolar rhabdomyosarcomas (RMS),musclederived tumor alveolar rhabdomyosarcoma,Rhabdomyosarcoma,alveolar rhabdomyosarcomas (ARMSs),alveolar rhabdomyosarcoma,Rhabdomyosarcomas (RMS),alveolar rhabdomyosarcoma tumors (ARMS),Alveolar rhabdomyosarcoma (RMS),alveolar rhabdomyosarcoma (RMS),alveolar Rhabdomyosarcoma (ARMS),alveolar Rhabdomyosarcoma (aRMS),Alveolar rhabdomyosarcoma (ARMS),alveolar rhabdomyosarcoma (ARMS),Embryonal Rhabdomyosarcoma (eRMS),Alveolar rhabdomyosarcoma (aRMS),rhabdomyosarcoma(RMS),rhabdomyosarcoma,human rhabdomyosarcoma,sarcoma,alveolar rhabdomyosarcom,Alveolar rhabdomyosarcoma},{Klijn_CCL:Sarcomatoid=1},PAX3->Oncogene{Bushman},chr2:223064607-223163715:-,paired_box_3,FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1	RH41_SOFT_TISSUE	0.09	0.53	0.0858	TRUE	0	0	0	2	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	CALM3--MT-ND4L	6	2	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1150	0	0.01	1	0.0572	0.0191	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RH41_SOFT_TISSUE	0.01	1	0.0763	FALSE	1	1	0	107	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-ND6--MT-TE	5	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0.0572	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH41_SOFT_TISSUE	1	1	0.1049	FALSE	499	1288	110	792	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	C15orf57--CBX3	4	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	32	18	0.29	0.42	0.0382	0.0859	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RH41_SOFT_TISSUE	0.29	0.42	0.1241	TRUE	267	562	48	632	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-ND6--MT-TE	3	13	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0.124	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH41_SOFT_TISSUE	1	1	0.1526	FALSE	499	1288	110	792	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	UTRN--MYT1L	6	0	UTRN	2292	chr6:144613043:+	MYT1L	120755	chr2:1855475:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0572	0	UTRN->chr6:144606837-145174170:+,utrophin,MYT1L->chr2:1792885-2335032:-,myelin_transcription_factor_1_like	RH41_SOFT_TISSUE	1	1	0.0572	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	NRIP1--AF127936.7	5	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.36	1	0.0477	0.0286	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RH41_SOFT_TISSUE	0.36	1	0.0763	FALSE	125	705	46	456	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	DHRS7B--KCNJ12	5	0	DHRS7B	2421	chr17:21030304:+	KCNJ12	20752	chr17:21311831:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0477	0	DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,KCNJ12->chr17:21279509-21323179:+,potassium_voltage-gated_channel_subfamily_J_member_12	RH41_SOFT_TISSUE	1	1	0.0477	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	KANSL1--LRRC37A2	5	0	KANSL1	8599	chr17:44230270:-	LRRC37A2	40568	chr17:44617542:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0477	0	GTEx_FI:{Brain=[count:2=pct:0.3]},KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	RH41_SOFT_TISSUE	1	1	0.0477	TRUE	0	0	0	2	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	MT-CO3--MT-ATP6	3	8	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0286	0.0763	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RH41_SOFT_TISSUE	0.85	1	0.1049	FALSE	189	492	56	216	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	RH41_SOFT_TISSUE	1	1	0.0477	TRUE	22	156	2	142	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	RP11-120D5.1--MID1	4	4	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	5	14	0.62	0.36	0.0382	0.0382	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RH41_SOFT_TISSUE	0.36	0.62	0.0764	FALSE	0	9	0	55	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	RP11-120I21.2--RALYL	4	4	RP11-120I21.2	1123	chr8:84825070:+	RALYL	12120	chr8:85441534:+	ONLY_REF_SPLICE	YES	58	0	0.12	1	0.0382	0.0382	NEIGHBORS[42504],RP11-120I21.2->chr8:84824948-85052518:+,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	RH41_SOFT_TISSUE	0.12	1	0.0764	FALSE	0	3	0	2	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	THSD1--GPC6	5	0	THSD1	2603	chr13:52976678:-	GPC6	13121	chr13:94197516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0477	0	THSD1->chr13:52951305-52980629:-,thrombospondin_type_1_domain_containing_1,GPC6->chr13:93879095-95059655:+,glypican_6	RH41_SOFT_TISSUE	1	1	0.0477	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	RP11-120D5.1--MID1	4	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	14	0.64	0.33	0.0382	0.0286	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RH41_SOFT_TISSUE	0.33	0.64	0.0668	FALSE	16	356	14	466	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	CTD-2008L17.1--RP11-456O19.2	4	0	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	RH41_SOFT_TISSUE	1	1	0.0382	FALSE	33	240	4	98	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	TMEM245--CNGB3	4	0	TMEM245	13994	chr9:111819471:-	CNGB3	45339	chr8:87623899:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0	TMEM245->chr9:111777432-111882225:-,transmembrane_protein_245,CNGB3->chr8:87566205-87755903:-,cyclic_nucleotide_gated_channel_beta_3	RH41_SOFT_TISSUE	1	1	0.0382	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	PXDN--MYT1L	1	11	PXDN	1597	chr2:1748028:-	MYT1L	74890	chr2:1812939:-	ONLY_REF_SPLICE	YES	1439	85	0.01	0.12	0.0095	0.1049	LOCAL_REARRANGEMENT:-:[44261],PXDN->chr2:1635659-1748624:-,peroxidasin,MYT1L->chr2:1792885-2335032:-,myelin_transcription_factor_1_like	RH41_SOFT_TISSUE	0.01	0.12	0.1144	TRUE	0	0	0	1	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0.0191	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RH41_SOFT_TISSUE	1	1	0.0477	FALSE	407	2205	196	549	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0.0191	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RH41_SOFT_TISSUE	1	1	0.0477	FALSE	515	4851	409	746	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	CCDC171--RUSC2	3	1	CCDC171	27752	chr9:15784692:+	RUSC2	59234	chr9:35546427:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0.0095	CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171,RUSC2->RUN_and_SH3_domain_containing_2,chr9:35490124-35561895:+	RH41_SOFT_TISSUE	1	1	0.0381	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	CTD-2008L17.1--RP11-456O19.2	3	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0.0095	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	RH41_SOFT_TISSUE	1	1	0.0381	FALSE	20	187	4	79	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1564	chrM:9090:+	MT-CO1	5965	chrM:7187:+	INCL_NON_REF_SPLICE	YES	2038	11285	0	0	0.0286	0.0095	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RH41_SOFT_TISSUE	0	0	0.0381	FALSE	183	104	9	328	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	RP11-120D5.1--MID1	3	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	14	0.36	0.22	0.0286	0.0095	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RH41_SOFT_TISSUE	0.22	0.36	0.0381	FALSE	0	48	1	163	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RH41_SOFT_TISSUE	1	1	0.0286	FALSE	183	104	9	328	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RH41_SOFT_TISSUE	1	1	0.0286	FALSE	189	492	56	216	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RH41_SOFT_TISSUE	1	1	0.0286	FALSE	462	80	0	856	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	SURF4--RPLP1	3	0	SURF4	7211	chr9:136229387:-	RPLP1	11308	chr15:69745157:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0286	0	SURF4->chr9:136228325-136242970:-,surfeit_4,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	RH41_SOFT_TISSUE	1	1	0.0286	TRUE	0	0	0	4	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	RAB31--SS18	2	3	RAB31	1280	chr18:9708441:+	SS18	36224	chr18:23637706:-	ONLY_REF_SPLICE	YES	43	209	0.1	0.02	0.0191	0.0286	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,SS18->Oncogene{Bushman},SS18,_nBAF_chromatin_remodeling_complex_subunit,chr18:23596578-23671181:-	RH41_SOFT_TISSUE	0.02	0.1	0.0477	TRUE	0	0	0	1	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	RAB31--SS18	2	3	RAB31	1280	chr18:9708441:+	SS18	32801	chr18:23658124:-	ONLY_REF_SPLICE	YES	43	241	0.1	0.02	0.0191	0.0286	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,SS18->Oncogene{Bushman},SS18,_nBAF_chromatin_remodeling_complex_subunit,chr18:23596578-23671181:-	RH41_SOFT_TISSUE	0.02	0.1	0.0477	TRUE	0	0	0	1	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	KANSL1--LRRC37A2	2	2	KANSL1	8599	chr17:44230270:-	LRRC37A2	36623	chr17:44594728:+	ONLY_REF_SPLICE	YES	98	25	0.04	0.14	0.0191	0.0191	GTEx_FI:{Brain=[count:2=pct:0.3]},KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	RH41_SOFT_TISSUE	0.04	0.14	0.0382	TRUE	0	1	0	3	1	FALSE	ACH-000100
RH41_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0.0191	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RH41_SOFT_TISSUE	1	1	0.0382	FALSE	467	2173	244	435	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	CELF2--TMEM232	2	1	CELF2	6164	chr10:11291164:+	TMEM232	67061	chr5:109625141:-	ONLY_REF_SPLICE	YES	152	0	0.02	1	0.0191	0.0095	CELF2->CUGBP,_Elav-like_family_member_2,chr10:11047259-11378674:+,TMEM232->chr5:109624934-110074657:-,transmembrane_protein_232	RH41_SOFT_TISSUE	0.02	1	0.0286	TRUE	0	0	0	1	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	5	6	0.38	0.33	0.0191	0.0095	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RH41_SOFT_TISSUE	0.33	0.38	0.0286	FALSE	25	145	6	90	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	RP11-120I21.2--RALYL	1	5	RP11-120I21.2	2184	chr8:84956839:+	RALYL	11088	chr8:85258354:+	ONLY_REF_SPLICE	NO	60	0	0.09	1	0.0095	0.0477	NEIGHBORS[42504],RP11-120I21.2->chr8:84824948-85052518:+,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	RH41_SOFT_TISSUE	0.09	1	0.0572	FALSE	0	0	0	2	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	SF1--FUS	2	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	308	952	0.01	0	0.0191	0.0095	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	RH41_SOFT_TISSUE	0	0.01	0.0286	FALSE	5	20	0	32	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	MATR3--CTNNA1	2	0	MATR3	9772	chr5:138629494:+	CTNNA1	57245	chr5:138221901:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	RH41_SOFT_TISSUE	1	1	0.0191	TRUE	2	3	0	5	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	NCOR2--UBC	2	0	NCOR2	3484	chr12:125002686:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	RH41_SOFT_TISSUE	1	1	0.0191	TRUE	7	26	3	12	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	OBSL1--MYCBP2-AS1	2	0	OBSL1	18282	chr2:220416251:-	MYCBP2-AS1	27271	chr13:77672060:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	OBSL1->chr2:220415451-220436581:-,obscurin-like_1,MYCBP2-AS1->MYCBP2_antisense_RNA_1,chr13:77649649-77672677:+	RH41_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	PXDN--MYT1L	2	0	PXDN	1049	chr2:1748576:-	MYT1L	70748	chr2:1844615:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	LOCAL_REARRANGEMENT:-:[44261],PXDN->chr2:1635659-1748624:-,peroxidasin,MYT1L->chr2:1792885-2335032:-,myelin_transcription_factor_1_like	RH41_SOFT_TISSUE	1	1	0.0191	TRUE	0	1	0	1	1	TRUE	ACH-000100
RH41_SOFT_TISSUE	RAB11A--IGF2	2	0	RAB11A	3450	chr15:66085110:+	IGF2	19866	chr11:2169037:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	RAB11A->RAB11A,_member_RAS_oncogene_family,chr15:66018392-66184329:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RH41_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	RP11-120I21.2--RALYL	2	0	RP11-120I21.2	1123	chr8:84825070:+	RALYL	19650	chr8:85785519:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	NEIGHBORS[42504],RP11-120I21.2->chr8:84824948-85052518:+,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	RH41_SOFT_TISSUE	1	1	0.0191	FALSE	0	0	0	1	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	RH41_SOFT_TISSUE	1	1	0.0191	FALSE	46	201	11	112	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	RH41_SOFT_TISSUE	1	1	0.0191	TRUE	0	1	0	17	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	THSD1--GPC6	2	0	THSD1	1464	chr13:52980166:-	GPC6	13121	chr13:94197516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	THSD1->chr13:52951305-52980629:-,thrombospondin_type_1_domain_containing_1,GPC6->chr13:93879095-95059655:+,glypican_6	RH41_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	WBSCR22--TXNDC5	2	0	WBSCR22	1649	chr7:73098003:+	TXNDC5	19983	chr6:7904956:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	WBSCR22->Williams-Beuren_syndrome_chromosome_region_22,chr7:73097355-73119491:+,TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5	RH41_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	CPSF6--C9orf3	1	2	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	227	248	0.01	0.01	0.0095	0.0191	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	RH41_SOFT_TISSUE	0.01	0.01	0.0286	FALSE	53	99	2	44	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	CTC-786C10.1--GSE1	1	2	CTC-786C10.1	1532	chr16:85205413:+	GSE1	8143	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.3	0.0095	0.0191	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RH41_SOFT_TISSUE	0.3	1	0.0286	TRUE	5	1	0	10	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	FHIT--OSBPL10	1	2	FHIT	16481	chr3:59908072:-	OSBPL10	39988	chr3:31774903:-	ONLY_REF_SPLICE	YES	8	6	0.27	0.33	0.0095	0.0191	FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad,OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10	RH41_SOFT_TISSUE	0.27	0.33	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000100
RH41_SOFT_TISSUE	VTI1A--RP11-57H14.3	1	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	50	0	0.06	1	0.0095	0.0191	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	RH41_SOFT_TISSUE	0.06	1	0.0286	FALSE	272	151	14	158	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	LRRC8A--ZFAND3	1	1	LRRC8A	3925	chr9:131648400:+	ZFAND3	21937	chr6:38084348:+	ONLY_REF_SPLICE	YES	48	115	0.04	0.02	0.0095	0.0095	LRRC8A->chr9:131644391-131680318:+,leucine-rich_repeat_containing_8_family_member_A,ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3	RH41_SOFT_TISSUE	0.02	0.04	0.019	TRUE	0	0	0	1	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	PCDH7--RP11-617I14.1	1	1	PCDH7	8615	chr4:30921991:+	RP11-617I14.1	21512	chr4:31196071:+	ONLY_REF_SPLICE	NO	77	0	0.03	1	0.0095	0.0095	NEIGHBORS[24344],PCDH7->chr4:30722037-31148422:+,protocadherin_7,RP11-617I14.1->chr4:31172766-31213297:+	RH41_SOFT_TISSUE	0.03	1	0.019	FALSE	0	3	1	1	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	R3HDM1--ZRANB3	1	1	R3HDM1	1179	chr2:136289203:+	ZRANB3	39021	chr2:136262066:-	ONLY_REF_SPLICE	YES	85	10	0.02	0.17	0.0095	0.0095	LOCAL_INVERSION:+:-:[219],R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+,ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3	RH41_SOFT_TISSUE	0.02	0.17	0.019	TRUE	0	0	0	1	0	FALSE	ACH-000100
RH41_SOFT_TISSUE	TRAK2--CDK15	1	1	TRAK2	1230	chr2:202316073:-	CDK15	28513	chr2:202671152:+	ONLY_REF_SPLICE	NO	37	0	0.05	1	0.0095	0.0095	TRAK2->chr2:202241930-202316302:-,trafficking_protein,_kinesin_binding_2,CDK15->chr2:202655184-202760273:+,cyclin-dependent_kinase_15	RH41_SOFT_TISSUE	0.05	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000100
SNU46_UPPER_AERODIGESTIVE_TRACT	ZWILCH--MAP2K1	113	57	ZWILCH	17881	chr15:66832548:+	MAP2K1	37341	chr15:66783043:+	INCL_NON_REF_SPLICE	YES	89	91	0.66	0.65	1.4295	0.7211	LOCAL_REARRANGEMENT:+:[12647],ZWILCH->chr15:66797297-66842115:+,zwilch_kinetochore_protein,MAP2K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr15:66679155-66784650:+,mitogen-activated_protein_kinase_kinase_1	SNU46_UPPER_AERODIGESTIVE_TRACT	0.65	0.66	2.1506	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	39	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4934	0.1012	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.5946	FALSE	462	80	0	856	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	37	7	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.4681	0.0886	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU46_UPPER_AERODIGESTIVE_TRACT	0.98	1	0.5567	TRUE	508	994	45	981	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	C19orf54--STRN4	24	22	C19orf54	3073	chr19:41255386:-	STRN4	19034	chr19:47236493:-	ONLY_REF_SPLICE	YES	42	83	0.52	0.36	0.3036	0.2783	C19orf54->chr19:41246761-41257458:-,chromosome_19_open_reading_frame_54,STRN4->chr19:47222764-47250251:-,striatin_4	SNU46_UPPER_AERODIGESTIVE_TRACT	0.36	0.52	0.5819	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	ZNF654--HMGB2	23	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.291	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.291	TRUE	0	0	0	518	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	22	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	106	10	0.18	0.71	0.2783	0.0253	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.18	0.71	0.3036	TRUE	519	3926	326	965	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	19	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2404	0.038	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.2784	FALSE	499	1288	110	792	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	CTC-550B14.7--BCKDHA	12	10	CTC-550B14.7	1272	chr19:55517832:+	BCKDHA	13031	chr19:41916542:+	ONLY_REF_SPLICE	YES	1	20	0.96	0.52	0.1518	0.1265	CTC-550B14.7->chr19:55517561-55559454:+,BCKDHA->branched_chain_keto_acid_dehydrogenase_E1,_alpha_polypeptide,chr19:41884215-41930910:+	SNU46_UPPER_AERODIGESTIVE_TRACT	0.52	0.96	0.2783	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	UBA52--RPS28	13	5	UBA52	4112	chr19:18685730:+	RPS28	10085	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	4710	1	0	0.95	0.1645	0.0633	UBA52->chr19:18682540-18688360:+,ubiquitin_A-52_residue_ribosomal_protein_fusion_product_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SNU46_UPPER_AERODIGESTIVE_TRACT	0	0.95	0.2278	TRUE	0	0	0	2	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	C19orf54--STRN4	7	24	C19orf54	4142	chr19:41251035:-	STRN4	18395	chr19:47237132:-	ONLY_REF_SPLICE	YES	44	88	0.41	0.26	0.0886	0.3036	C19orf54->chr19:41246761-41257458:-,chromosome_19_open_reading_frame_54,STRN4->chr19:47222764-47250251:-,striatin_4	SNU46_UPPER_AERODIGESTIVE_TRACT	0.26	0.41	0.3922	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	LINC00085--SHISA7	12	4	LINC00085	2216	chr19:52197808:+	SHISA7	17016	chr19:55944243:-	INCL_NON_REF_SPLICE	YES	7	1	0.7	0.94	0.1518	0.0506	LINC00085->chr19:52196593-52215640:+,SHISA7->chr19:55940107-55954230:-,shisa_family_member_7	SNU46_UPPER_AERODIGESTIVE_TRACT	0.7	0.94	0.2024	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	C19orf54--STRN4	7	23	C19orf54	4142	chr19:41251035:-	STRN4	19034	chr19:47236493:-	ONLY_REF_SPLICE	YES	44	83	0.41	0.27	0.0886	0.291	C19orf54->chr19:41246761-41257458:-,chromosome_19_open_reading_frame_54,STRN4->chr19:47222764-47250251:-,striatin_4	SNU46_UPPER_AERODIGESTIVE_TRACT	0.27	0.41	0.3796	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	8	19	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	5	0.96	0.84	0.1012	0.2404	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU46_UPPER_AERODIGESTIVE_TRACT	0.84	0.96	0.3416	FALSE	189	492	56	216	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	9	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.1139	0.0759	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU46_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.1898	FALSE	499	1288	110	792	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	10	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.86	0.1265	0.0253	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU46_UPPER_AERODIGESTIVE_TRACT	0.86	1	0.1518	FALSE	515	4851	409	746	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	8	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	37	16	0.3	0.5	0.1012	0.1012	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU46_UPPER_AERODIGESTIVE_TRACT	0.3	0.5	0.2024	TRUE	267	562	48	632	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	RP11-444D3.1--SOX5	9	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1139	0.038	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.1519	TRUE	477	1352	189	275	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	HSPBP1--GRK5	9	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1139	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.1139	TRUE	1	39	0	134	39	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1139	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.1139	TRUE	0	0	0	434	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	19	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	2	4	0.92	0.85	0.0506	0.2404	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU46_UPPER_AERODIGESTIVE_TRACT	0.85	0.92	0.291	FALSE	189	492	56	216	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	8	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1012	0.038	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.1392	FALSE	499	1288	110	792	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	EXOC4--FAM185A	8	2	EXOC4	6623	chr7:133002144:+	FAM185A	51770	chr7:102427782:+	ONLY_REF_SPLICE	YES	63	12	0.14	0.45	0.1012	0.0253	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,FAM185A->chr7:102389418-102449672:+,family_with_sequence_similarity_185_member_A	SNU46_UPPER_AERODIGESTIVE_TRACT	0.14	0.45	0.1265	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	6	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0759	0.1265	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.2024	FALSE	462	80	0	856	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	EEF2--RPS28	8	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1012	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.1012	TRUE	0	0	0	100	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	16	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	3	0.95	0.87	0.0506	0.2024	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU46_UPPER_AERODIGESTIVE_TRACT	0.87	0.95	0.253	FALSE	189	492	56	216	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1012	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.1012	FALSE	462	80	0	856	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	PBX1--ATF6	8	0	PBX1	31236	chr1:164783763:+	ATF6	69738	chr1:161929246:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1012	0	PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1,ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.1012	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	19	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	5	0.96	0.81	0.038	0.2404	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU46_UPPER_AERODIGESTIVE_TRACT	0.81	0.96	0.2784	FALSE	189	492	56	216	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	HSP90AB1--MT-RNR2	7	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2460	0	0	1	0.0886	0.0127	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU46_UPPER_AERODIGESTIVE_TRACT	0	1	0.1013	FALSE	13	9	0	364	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	16	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	2	2	0.9	0.9	0.038	0.2024	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU46_UPPER_AERODIGESTIVE_TRACT	0.9	0.9	0.2404	FALSE	189	492	56	216	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	7	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0886	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.0886	FALSE	189	492	56	216	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	6	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.47	1	0.0759	0.0253	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.47	1	0.1012	FALSE	125	705	46	456	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	FAM185A--FBXL13	6	1	FAM185A	10793	chr7:102427916:+	FBXL13	37331	chr7:102495307:-	ONLY_REF_SPLICE	YES	4	1	0.64	0.88	0.0759	0.0127	LOCAL_INVERSION:+:-:[3636],FAM185A->chr7:102389418-102449672:+,family_with_sequence_similarity_185_member_A,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.64	0.88	0.0886	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	5	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0633	0.0633	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.1266	FALSE	499	1288	110	792	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0.0886	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.1392	FALSE	499	1288	110	792	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	5	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	13	1	0.35	0.0633	0.0253	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU46_UPPER_AERODIGESTIVE_TRACT	0.35	1	0.0886	TRUE	458	1351	185	561	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	ADAM9--WDR60	5	1	ADAM9	21739	chr8:38940592:+	WDR60	40464	chr7:158694430:+	ONLY_REF_SPLICE	YES	669	4	0.01	0.6	0.0633	0.0127	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,WDR60->WD_repeat_domain_60,chr7:158649269-158749438:+	SNU46_UPPER_AERODIGESTIVE_TRACT	0.01	0.6	0.076	FALSE	0	0	0	1	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	FBXL13--LAMB1	4	5	FBXL13	28443	chr7:102453724:-	LAMB1	49129	chr7:107596075:-	INCL_NON_REF_SPLICE	YES	2	267	0.82	0.03	0.0506	0.0633	FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-,LAMB1->chr7:107564244-107643700:-,laminin_subunit_beta_1	SNU46_UPPER_AERODIGESTIVE_TRACT	0.03	0.82	0.1139	TRUE	0	0	0	1	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	4	5	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	2	0.82	0.82	0.0506	0.0633	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU46_UPPER_AERODIGESTIVE_TRACT	0.82	0.82	0.1139	FALSE	189	492	56	216	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	VCL--AC010127.3	5	1	VCL	20814	chr10:75868914:+	AC010127.3	31067	chr2:166872123:+	ONLY_REF_SPLICE	YES	483	0	0.01	1	0.0633	0.0127	VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,AC010127.3->chr2:166813909-167158294:+	SNU46_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.076	FALSE	0	0	0	1	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	5	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0633	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.0633	FALSE	189	492	56	216	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	LINC00085--SHISA7	4	3	LINC00085	2216	chr19:52197808:+	SHISA7	18365	chr19:55942894:-	INCL_NON_REF_SPLICE	YES	7	4	0.5	0.64	0.0506	0.038	LINC00085->chr19:52196593-52215640:+,SHISA7->chr19:55940107-55954230:-,shisa_family_member_7	SNU46_UPPER_AERODIGESTIVE_TRACT	0.5	0.64	0.0886	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	DPH6-AS1--RP11-684B21.1	4	2	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0506	0.0253	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	SNU46_UPPER_AERODIGESTIVE_TRACT	0.55	1	0.0759	TRUE	17	119	17	33	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	6	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.038	0.0759	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU46_UPPER_AERODIGESTIVE_TRACT	0.82	1	0.1139	FALSE	499	1288	110	792	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	EXOC4--FBXL13	3	5	EXOC4	6623	chr7:133002144:+	FBXL13	63713	chr7:102495307:-	ONLY_REF_SPLICE	YES	63	1	0.11	0.89	0.038	0.0633	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.11	0.89	0.1013	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	HSP90AB1--MT-RNR2	4	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2436	0	0	1	0.0506	0.0127	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU46_UPPER_AERODIGESTIVE_TRACT	0	1	0.0633	FALSE	13	9	0	364	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	PHF21B--PROS1	4	1	PHF21B	2455	chr22:45404426:-	PROS1	29780	chr3:93646251:-	ONLY_REF_SPLICE	YES	1	27	0.83	0.16	0.0506	0.0127	PHF21B->PHD_finger_protein_21B,chr22:45277042-45405880:-,PROS1->Oncogene{Bushman},chr3:93591881-93692910:-,protein_S_(alpha)	SNU46_UPPER_AERODIGESTIVE_TRACT	0.16	0.83	0.0633	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	MT-CO3--MT-ATP6	3	4	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	2	2	0.78	0.78	0.038	0.0506	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU46_UPPER_AERODIGESTIVE_TRACT	0.78	0.78	0.0886	FALSE	189	492	56	216	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	CTD-2008L17.1--RP11-456O19.2	3	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.038	0.0253	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SNU46_UPPER_AERODIGESTIVE_TRACT	0.62	1	0.0633	FALSE	33	240	4	98	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.038	0.0253	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.0633	FALSE	407	2205	196	549	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	AC009961.3--SUCLG1	2	5	AC009961.3	7019	chr2:160527219:-	SUCLG1	19142	chr2:84658783:-	ONLY_REF_SPLICE	YES	0	249	1	0.03	0.0253	0.0633	AC009961.3->chr2:160527219-160568946:-,SUCLG1->chr2:84650647-84687169:-,succinate-CoA_ligase_alpha_subunit	SNU46_UPPER_AERODIGESTIVE_TRACT	0.03	1	0.0886	TRUE	0	0	0	1	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	FAM185A--FBXL13	3	1	FAM185A	10793	chr7:102427916:+	FBXL13	39787	chr7:102462650:-	ONLY_REF_SPLICE	YES	4	3	0.5	0.57	0.038	0.0127	LOCAL_INVERSION:+:-:[3636],FAM185A->chr7:102389418-102449672:+,family_with_sequence_similarity_185_member_A,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.5	0.57	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	39	1	0.09	0.038	0.0127	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU46_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.0507	TRUE	465	1949	224	605	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	AC009961.3--BAZ2B	3	0	AC009961.3	2693	chr2:160567228:-	BAZ2B	15123	chr2:160335232:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.038	0	NEIGHBORS[54016],AC009961.3->chr2:160527219-160568946:-,BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.038	FALSE	0	0	0	1	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	HSPBP1--GRK5	3	0	HSPBP1	1858	chr19:55790892:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.038	TRUE	1	39	0	134	39	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	HSPBP1--GRK5	3	0	HSPBP1	1855	chr19:55790895:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.038	TRUE	1	39	0	134	39	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.27	1	0.0253	0.0506	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.27	1	0.0759	FALSE	164	806	69	479	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	AC009961.3--SUCLG1	2	2	AC009961.3	7019	chr2:160527219:-	SUCLG1	21627	chr2:84652727:-	ONLY_REF_SPLICE	YES	0	245	1	0.02	0.0253	0.0253	AC009961.3->chr2:160527219-160568946:-,SUCLG1->chr2:84650647-84687169:-,succinate-CoA_ligase_alpha_subunit	SNU46_UPPER_AERODIGESTIVE_TRACT	0.02	1	0.0506	TRUE	0	0	0	1	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	RBMS3--DPH3	2	2	RBMS3	17979	chr3:29977687:+	DPH3	34171	chr3:16302336:-	ONLY_REF_SPLICE	YES	15	160	0.21	0.02	0.0253	0.0253	RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+,DPH3->chr3:16299485-16306479:-,diphthamide_biosynthesis_3	SNU46_UPPER_AERODIGESTIVE_TRACT	0.02	0.21	0.0506	TRUE	0	0	0	1	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	BASP1--RP11-321E2.3	2	1	BASP1	4506	chr5:17217919:+	RP11-321E2.3	12944	chr5:17441578:+	ONLY_REF_SPLICE	YES	705	0	0	1	0.0253	0.0127	BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+,RP11-321E2.3->chr5:17404128-17441803:+	SNU46_UPPER_AERODIGESTIVE_TRACT	0	1	0.038	FALSE	0	4	0	4	3	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	FBXL13--LAMB1	2	1	FBXL13	25221	chr7:102462487:-	LAMB1	49129	chr7:107596075:-	ONLY_REF_SPLICE	YES	4	267	0.43	0.01	0.0253	0.0127	FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-,LAMB1->chr7:107564244-107643700:-,laminin_subunit_beta_1	SNU46_UPPER_AERODIGESTIVE_TRACT	0.01	0.43	0.038	FALSE	0	0	0	1	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	RBMS3--DPH3	1	5	RBMS3	19027	chr3:29985745:+	DPH3	33096	chr3:16305736:-	ONLY_REF_SPLICE	NO	15	159	0.29	0.04	0.0127	0.0633	RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+,DPH3->chr3:16299485-16306479:-,diphthamide_biosynthesis_3	SNU46_UPPER_AERODIGESTIVE_TRACT	0.04	0.29	0.076	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	AC009961.3--SUCLG1	2	0	AC009961.3	2693	chr2:160567228:-	SUCLG1	19142	chr2:84658783:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	AC009961.3->chr2:160527219-160568946:-,SUCLG1->chr2:84650647-84687169:-,succinate-CoA_ligase_alpha_subunit	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	ACBD6--U2AF1	2	0	ACBD6	4072	chr1:180461404:-	U2AF1	23054	chr21:44520629:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	PRRC1--AC147651.4	2	0	PRRC1	1168	chr5:126853468:+	AC147651.4	20769	chr7:647502:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	PRRC1->chr5:126853301-126890781:+,proline_rich_coiled-coil_1,AC147651.4->chr7:642822-648119:+	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.0253	FALSE	272	151	14	158	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0127	0.038	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU46_UPPER_AERODIGESTIVE_TRACT	1	1	0.0507	FALSE	275	511	55	178	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	EXOC4--FBXL13	1	2	EXOC4	6623	chr7:133002144:+	FBXL13	66169	chr7:102462650:-	ONLY_REF_SPLICE	YES	63	3	0.05	0.5	0.0127	0.0253	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.05	0.5	0.038	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	EXOC4--FBXL13	1	2	EXOC4	6623	chr7:133002144:+	FBXL13	64797	chr7:102473421:-	ONLY_REF_SPLICE	NO	63	1	0.05	0.75	0.0127	0.0253	EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.05	0.75	0.038	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	2	0.75	0.6	0.0127	0.0253	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU46_UPPER_AERODIGESTIVE_TRACT	0.6	0.75	0.038	FALSE	467	2173	244	435	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	FAM185A--FBXL13	1	1	FAM185A	10793	chr7:102427916:+	FBXL13	38415	chr7:102473421:-	ONLY_REF_SPLICE	NO	4	1	0.33	0.67	0.0127	0.0127	LOCAL_INVERSION:+:-:[3636],FAM185A->chr7:102389418-102449672:+,family_with_sequence_similarity_185_member_A,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.33	0.67	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	HIBADH--RPS27A	1	1	HIBADH	6024	chr7:27668990:-	RPS27A	15229	chr2:55459944:+	ONLY_REF_SPLICE	NO	122	70	0.02	0.03	0.0127	0.0127	HIBADH->3-hydroxyisobutyrate_dehydrogenase,chr7:27565061-27702614:-,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	SNU46_UPPER_AERODIGESTIVE_TRACT	0.02	0.03	0.0254	TRUE	0	0	0	1	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.0127	0.0127	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.0254	FALSE	292	1546	117	613	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	OXR1--RP11-152P17.2	1	1	OXR1	3409	chr8:107460276:+	RP11-152P17.2	38039	chr8:106810670:-	ONLY_REF_SPLICE	YES	1	29	0.67	0.06	0.0127	0.0127	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,RP11-152P17.2->chr8:106792474-107072752:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.06	0.67	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	PDE4D--RP11-479O16.1	1	1	PDE4D	20832	chr5:58882155:-	RP11-479O16.1	60623	chr5:58110572:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0127	0.0127	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,RP11-479O16.1->chr5:58037408-58112926:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.67	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	RGS17--SIN3A	1	1	RGS17	2270	chr6:153365035:-	SIN3A	39203	chr15:75688837:-	ONLY_REF_SPLICE	NO	13	58	0.13	0.03	0.0127	0.0127	RGS17->chr6:153325594-153452384:-,regulator_of_G-protein_signaling_17,SIN3A->SIN3_transcription_regulator_family_member_A,chr15:75661720-75748183:-	SNU46_UPPER_AERODIGESTIVE_TRACT	0.03	0.13	0.0254	TRUE	0	0	0	1	0	FALSE	ACH-000500
SNU46_UPPER_AERODIGESTIVE_TRACT	VCL--AC010127.3	1	1	VCL	20814	chr10:75868914:+	AC010127.3	37732	chr2:166933598:+	ONLY_REF_SPLICE	YES	483	0	0	1	0.0127	0.0127	VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,AC010127.3->chr2:166813909-167158294:+	SNU46_UPPER_AERODIGESTIVE_TRACT	0	1	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000500
COLO684_ENDOMETRIUM	RP11-123O10.4--GRIP1	164	25	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.3975	0.213	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO684_ENDOMETRIUM	1	1	1.6105	FALSE	416	2512	207	587	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	OTX2-AS1--RP11-624J12.1	115	74	OTX2-AS1	1287	chr14:57280187:+	RP11-624J12.1	15925	chr14:57015989:+	ONLY_REF_SPLICE	YES	176	0	0.52	1	0.9799	0.6306	OTX2-AS1->OTX2_antisense_RNA_1_(head_to_head),chr14:57279901-57618895:+,RP11-624J12.1->chr14:56981049-57018027:+	COLO684_ENDOMETRIUM	0.52	1	1.6105	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TN	109	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9288	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO684_ENDOMETRIUM	1	1	0.9288	FALSE	369	2501	205	193	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	RP11-680G10.1--GSE1	95	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	265	1	0.28	0.8095	0.0852	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COLO684_ENDOMETRIUM	0.28	1	0.8947	TRUE	465	1949	224	605	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	TIMM23B--LINC00843	92	9	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.784	0.0767	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COLO684_ENDOMETRIUM	1	1	0.8607	TRUE	508	994	45	981	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	OTX2-AS1--TMEM260	78	59	OTX2-AS1	1287	chr14:57280187:+	TMEM260	18681	chr14:57051719:+	ONLY_REF_SPLICE	YES	176	35	0.44	0.8	0.6647	0.5028	OTX2-AS1->OTX2_antisense_RNA_1_(head_to_head),chr14:57279901-57618895:+,TMEM260->chr14:56955072-57117324:+,transmembrane_protein_260	COLO684_ENDOMETRIUM	0.44	0.8	1.1675	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	DPH7--PTP4A3	86	0	DPH7	1297	chr9:140473091:-	PTP4A3	14726	chr8:142431487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7328	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:10=pct:2.7],Heart=[count:7=pct:2.8],Pituitary=[count:4=pct:7.7],Nerve=[count:2=pct:1.2],Esophagus=[count:2=pct:0.5],Colon=[count:2=pct:1.0],Lung=[count:2=pct:1.2],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Kidney=[count:1=pct:7.1],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},GTEx_v2:{count=46;pct=0.53%;dist=Artery_-_Tibial=9,Heart_-_Atrial_Appendage=9,Pituitary=6,Cells_-_EBV-transformed_lymphocytes=5,Artery_-_Aorta=3,Lung=2,Artery_-_Coronary=2,Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hypothalamus=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1,Testis=1},DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7,PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3	COLO684_ENDOMETRIUM	1	1	0.7328	TRUE	29	213	5	17	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	RP11-680G10.1--GSE1	76	20	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	29	1	0.77	0.6476	0.1704	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COLO684_ENDOMETRIUM	0.77	1	0.818	TRUE	458	1351	185	561	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	AP000525.9--LA16c-60G3.6	70	6	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	32	0	0.7	1	0.5965	0.0511	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	COLO684_ENDOMETRIUM	0.7	1	0.6476	TRUE	0	42	0	133	42	FALSE	ACH-000864
COLO684_ENDOMETRIUM	ZNF654--HMGB2	70	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5965	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	COLO684_ENDOMETRIUM	1	1	0.5965	TRUE	0	0	0	518	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4L--MT-RNR2	65	8	MT-ND4L	1159	chrM:10628:+	MT-RNR2	4852	chrM:2225:+	INCL_NON_REF_SPLICE	YES	1229	11691	0.06	0.01	0.5539	0.0682	LOCAL_REARRANGEMENT:+:[7241],MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO684_ENDOMETRIUM	0.01	0.06	0.6221	FALSE	17	32	5	7	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	KANSL1--ARL17B	61	18	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	42	34	0.65	0.7	0.5198	0.1534	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	COLO684_ENDOMETRIUM	0.65	0.7	0.6732	TRUE	181	1564	124	196	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	TUBB2B--MT-CO1	62	2	TUBB2B	4318	chr6:3225826:-	MT-CO1	9300	chrM:6554:+	INCL_NON_REF_SPLICE	YES	1048	17463	0.06	0	0.5283	0.017	TUBB2B->chr6:3224495-3231964:-,tubulin_beta_2B_class_IIb,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO684_ENDOMETRIUM	0	0.06	0.5453	FALSE	0	0	0	1	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND6--MT-TE	60	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5113	0.0256	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO684_ENDOMETRIUM	1	1	0.5369	FALSE	499	1288	110	792	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	RNF220--QSOX1	56	14	RNF220	5390	chr1:44878394:+	QSOX1	29348	chr1:180135626:+	ONLY_REF_SPLICE	YES	109	96	0.39	0.42	0.4772	0.1193	{Klijn_CCL:Ovary=1},RNF220->Oncogene{Bushman},chr1:44870866-45117396:+,ring_finger_protein_220,QSOX1->chr1:180123969-180173165:+,quiescin_sulfhydryl_oxidase_1	COLO684_ENDOMETRIUM	0.39	0.42	0.5965	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TC	54	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4601	0.0596	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO684_ENDOMETRIUM	1	1	0.5197	FALSE	462	80	0	856	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	TIMM23--RP11-464F9.1	55	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	119	3	0.32	0.95	0.4687	0.0085	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	COLO684_ENDOMETRIUM	0.32	0.95	0.4772	TRUE	519	3926	326	965	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	CTD-2314B22.3--RP11-536C10.19	54	3	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	39	0	0.59	1	0.4601	0.0256	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	COLO684_ENDOMETRIUM	0.59	1	0.4857	TRUE	0	2	0	9	2	TRUE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	4	192	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	24	1	0.89	0.99	0.0341	1.6361	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.89	0.99	1.6702	FALSE	344	826	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	4	190	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	16	1	0.92	0.99	0.0341	1.619	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.92	0.99	1.6531	FALSE	344	826	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	4	189	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	22	3	0.9	0.98	0.0341	1.6105	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.9	0.98	1.6446	FALSE	344	826	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	3	192	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	23	1	0.89	0.99	0.0256	1.6361	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.89	0.99	1.6617	FALSE	344	826	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	3	186	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	15	3	0.93	0.98	0.0256	1.585	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.93	0.98	1.6106	FALSE	344	826	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	11	144	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	10	3	0.94	0.98	0.0937	1.2271	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.94	0.98	1.3208	FALSE	344	821	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	4	169	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	12	2	0.94	0.99	0.0341	1.4401	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.94	0.99	1.4742	FALSE	344	826	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	8	122	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	19	1	0.87	0.99	0.0682	1.0396	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.87	0.99	1.1078	FALSE	344	826	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TN	38	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3238	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO684_ENDOMETRIUM	1	1	0.3238	FALSE	369	2501	205	193	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	4	129	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	16	1	0.89	0.99	0.0341	1.0992	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.89	0.99	1.1333	FALSE	344	826	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	OR51S1--TP53I11	35	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2982	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	COLO684_ENDOMETRIUM	1	1	0.2982	TRUE	402	216	10	229	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	5	117	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	24	1	0.84	0.99	0.0426	0.997	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.84	0.99	1.0396	FALSE	344	827	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	4	117	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	20	1	0.86	0.99	0.0341	0.997	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.86	0.99	1.0311	FALSE	344	827	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	7	92	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11	0	0.9	1	0.0596	0.784	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	0.9	1	0.8436	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	13	67	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	7	14	0.92	0.85	0.1108	0.5709	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	0.85	0.92	0.6817	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	10	76	MT-CO3	1322	chrM:9528:+	MT-ATP6	5185	chrM:8927:+	INCL_NON_REF_SPLICE	YES	10	72	0.9	0.54	0.0852	0.6476	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	0.54	0.9	0.7328	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND6--MT-TE	24	19	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.2045	0.1619	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO684_ENDOMETRIUM	0.93	1	0.3664	FALSE	499	1288	110	792	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TN	10	74	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0852	0.6306	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO684_ENDOMETRIUM	1	1	0.7158	FALSE	369	2501	205	193	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	3	97	MT-ND4	1503	chrM:11262:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	245	1	0.29	0.99	0.0256	0.8266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.29	0.99	0.8522	FALSE	344	827	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	3	97	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	21	1	0.83	0.99	0.0256	0.8266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.83	0.99	0.8522	FALSE	344	826	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TN	15	48	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1278	0.409	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO684_ENDOMETRIUM	1	1	0.5368	FALSE	369	2501	205	193	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND6--MT-TE	23	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.196	0.0426	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO684_ENDOMETRIUM	1	1	0.2386	FALSE	499	1288	110	792	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TN	16	33	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1363	0.2812	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO684_ENDOMETRIUM	1	1	0.4175	FALSE	369	2501	205	193	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	3	84	MT-CO3	1642	chrM:9848:+	MT-ATP6	5072	chrM:8814:+	INCL_NON_REF_SPLICE	YES	1	34	0.99	0.72	0.0256	0.7158	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	0.72	0.99	0.7414	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	5	76	MT-CO3	1220	chrM:9426:+	MT-ATP6	4971	chrM:8713:+	INCL_NON_REF_SPLICE	NO	11	39	0.88	0.68	0.0426	0.6476	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	0.68	0.88	0.6902	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TN	17	26	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1449	0.2216	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO684_ENDOMETRIUM	1	1	0.3665	FALSE	369	2501	205	193	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	3	81	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	30	1	0.74	0.99	0.0256	0.6902	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.74	0.99	0.7158	FALSE	344	826	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	RP11-123O10.4--GRIP1	21	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	3	1	0.91	0.1789	0.0767	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO684_ENDOMETRIUM	0.91	1	0.2556	FALSE	93	270	15	244	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	HSP90AB1--MT-RNR2	21	5	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2074	0	0.01	1	0.1789	0.0426	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO684_ENDOMETRIUM	0.01	1	0.2215	FALSE	13	9	0	364	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	4	73	MT-CO3	1126	chrM:9332:+	MT-ATP6	4943	chrM:8685:+	INCL_NON_REF_SPLICE	YES	5	37	0.94	0.68	0.0341	0.6221	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	0.68	0.94	0.6562	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	14	32	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	9593	0	0	1	0.1193	0.2727	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0	1	0.392	FALSE	328	800	43	304	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TN	16	22	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1363	0.1875	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO684_ENDOMETRIUM	1	1	0.3238	FALSE	369	2501	205	193	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	16	20	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	16	0	0.69	1	0.1363	0.1704	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.69	1	0.3067	FALSE	344	826	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	4	67	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	7	14	0.91	0.84	0.0341	0.5709	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	0.84	0.91	0.605	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	HSP90AB1--MT-RNR2	19	6	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2024	0	0.01	1	0.1619	0.0511	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO684_ENDOMETRIUM	0.01	1	0.213	FALSE	13	9	0	364	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	6	54	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	10	1	0.86	0.98	0.0511	0.4601	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.86	0.98	0.5112	FALSE	344	821	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	14	21	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	5664	0	0.01	1	0.1193	0.1789	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.01	1	0.2982	FALSE	344	827	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	3	62	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	1	18	0.98	0.78	0.0256	0.5283	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	0.78	0.98	0.5539	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	3	62	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0256	0.5283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.97	1	0.5539	FALSE	344	821	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	4	52	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	2	1	0.97	0.98	0.0341	0.4431	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	0.97	0.98	0.4772	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND6--MT-TE	4	51	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0.4346	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO684_ENDOMETRIUM	1	1	0.4687	FALSE	499	1288	110	792	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TN	16	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1363	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO684_ENDOMETRIUM	1	1	0.1363	FALSE	369	2501	205	193	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	3	50	MT-ND4	1519	chrM:11278:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	YES	322	0	0.14	1	0.0256	0.4261	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.14	1	0.4517	FALSE	344	827	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	11	16	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	30	0	0.47	1	0.0937	0.1363	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.47	1	0.23	FALSE	344	826	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND6--MT-TE	10	19	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0852	0.1619	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO684_ENDOMETRIUM	1	1	0.2471	FALSE	499	1288	110	792	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND6--MT-TE	7	28	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0596	0.2386	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO684_ENDOMETRIUM	0.95	1	0.2982	FALSE	499	1288	110	792	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	8	20	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	18	0	0.61	1	0.0682	0.1704	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.61	1	0.2386	FALSE	344	827	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	8	20	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	192	0	0.13	1	0.0682	0.1704	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.13	1	0.2386	FALSE	344	827	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND6--MT-TE	6	28	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0511	0.2386	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO684_ENDOMETRIUM	0.92	1	0.2897	FALSE	499	1288	110	792	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	5	31	MT-ND4	1471	chrM:11230:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	164	0	0.18	1	0.0426	0.2642	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.18	1	0.3068	FALSE	344	827	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	5	31	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	16	0	0.69	1	0.0426	0.2642	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.69	1	0.3068	FALSE	344	827	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TN	4	33	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0.2812	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO684_ENDOMETRIUM	1	1	0.3153	FALSE	369	2501	205	193	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	4	31	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	31	0	0.53	1	0.0341	0.2642	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.53	1	0.2983	FALSE	344	826	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	NRIP1--AF127936.7	11	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.0937	0.0085	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO684_ENDOMETRIUM	0.75	1	0.1022	FALSE	292	1546	117	613	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	3	32	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	6701	0	0.01	1	0.0256	0.2727	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.01	1	0.2983	FALSE	344	827	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	3	31	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	30	0	0.53	1	0.0256	0.2642	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.53	1	0.2898	FALSE	344	826	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	3	31	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	8	1	0.81	0.97	0.0256	0.2642	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.81	0.97	0.2898	FALSE	344	821	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND5--MT-CO3	7	14	MT-ND5	2591	chrM:13927:+	MT-CO3	6171	chrM:9565:+	INCL_NON_REF_SPLICE	YES	3354	12236	0.01	0	0.0596	0.1193	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	COLO684_ENDOMETRIUM	0	0.01	0.1789	FALSE	0	15	2	18	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TC	10	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0852	0.0085	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO684_ENDOMETRIUM	1	1	0.0937	FALSE	462	80	0	856	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TN	10	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0852	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO684_ENDOMETRIUM	1	1	0.0852	FALSE	369	2501	205	193	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND6--MT-TE	3	27	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0256	0.2301	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO684_ENDOMETRIUM	0.91	1	0.2557	FALSE	499	1288	110	792	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	9	2	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0767	0.017	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	1	1	0.0937	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	5	17	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0426	0.1449	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	0.92	1	0.1875	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	AP000525.9--LA16c-60G3.6	7	8	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	38	0	0.28	1	0.0596	0.0682	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	COLO684_ENDOMETRIUM	0.28	1	0.1278	TRUE	0	8	0	10	8	TRUE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	4	20	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	30	0	0.44	1	0.0341	0.1704	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.44	1	0.2045	FALSE	344	826	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND5--MT-CO3	3	24	MT-ND5	2797	chrM:14133:+	MT-CO3	5963	chrM:9357:+	INCL_NON_REF_SPLICE	YES	0	6784	1	0	0.0256	0.2045	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	COLO684_ENDOMETRIUM	0	1	0.2301	FALSE	0	15	2	17	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TN	9	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0767	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO684_ENDOMETRIUM	1	1	0.0767	FALSE	369	2501	205	193	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND6--MT-TE	4	19	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0341	0.1619	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO684_ENDOMETRIUM	0.88	1	0.196	FALSE	499	1288	110	792	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	6	10	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	7	0	0.7	1	0.0511	0.0852	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	0.7	1	0.1363	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	AP000525.9--LA16c-60G3.6	8	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	32	0	0.22	1	0.0682	0.0085	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	COLO684_ENDOMETRIUM	0.22	1	0.0767	TRUE	0	5	0	18	5	TRUE	ACH-000864
COLO684_ENDOMETRIUM	CTD-2314B22.3--RP11-536C10.19	7	5	CTD-2314B22.3	9273	chr14:19894700:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	245	0	0.05	1	0.0596	0.0426	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	COLO684_ENDOMETRIUM	0.05	1	0.1022	TRUE	0	1	0	4	1	TRUE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	3	21	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0256	0.1789	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	0.92	1	0.2045	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	8	1	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0682	0.0085	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	1	1	0.0767	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	3	20	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	19	0	0.55	1	0.0256	0.1704	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.55	1	0.196	FALSE	344	826	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	3	20	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	16	0	0.59	1	0.0256	0.1704	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.59	1	0.196	FALSE	344	827	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TC	6	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0.0511	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO684_ENDOMETRIUM	1	1	0.1022	FALSE	462	80	0	856	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	7	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0596	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	1	1	0.0596	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	4	12	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	7	0	0.7	1	0.0341	0.1023	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	0.7	1	0.1364	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	PFKL--MT-ND4L	7	0	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0596	0	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	1	1	0.0596	FALSE	0	0	0	33	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	EEF2--RPS28	6	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	3230	0	0	1	0.0511	0.0085	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	COLO684_ENDOMETRIUM	0	1	0.0596	FALSE	0	0	0	100	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ATP8	6	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	9138	22	0	0.24	0.0511	0.0085	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO684_ENDOMETRIUM	0	0.24	0.0596	FALSE	230	193	14	283	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND6--MT-TE	4	9	MT-ND6	1261	chrM:14413:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0341	0.0767	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO684_ENDOMETRIUM	0.93	1	0.1108	FALSE	499	1288	110	792	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND5--MT-CO3	3	12	MT-ND5	2403	chrM:13739:+	MT-CO3	5952	chrM:9346:+	INCL_NON_REF_SPLICE	YES	2786	5728	0.01	0	0.0256	0.1023	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	COLO684_ENDOMETRIUM	0	0.01	0.1279	FALSE	0	15	2	18	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND6--MT-TE	6	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO684_ENDOMETRIUM	1	1	0.0511	FALSE	499	1288	110	792	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TN	6	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO684_ENDOMETRIUM	1	1	0.0511	FALSE	369	2501	205	193	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	TRAF7--TSC2	6	0	TRAF7	1161	chr16:2205859:+	TSC2	33980	chr16:2120457:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0511	0	LOCAL_REARRANGEMENT:+:[66983],TRAF7->Oncogene{Bushman},TNF_receptor_associated_factor_7,chr16:2205699-2228130:+,TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2	COLO684_ENDOMETRIUM	1	1	0.0511	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ATP8	3	11	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	4554	0	0	1	0.0256	0.0937	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO684_ENDOMETRIUM	0	1	0.1193	FALSE	222	212	16	282	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	3	11	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	19	0	0.42	1	0.0256	0.0937	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.42	1	0.1193	FALSE	344	827	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	4	6	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	13	0	0.43	1	0.0341	0.0511	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.43	1	0.0852	FALSE	344	826	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ATP8	3	9	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	10852	0	0	1	0.0256	0.0767	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO684_ENDOMETRIUM	0	1	0.1023	FALSE	231	217	16	283	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ATP8	5	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10069	27	0	0.18	0.0426	0.0085	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO684_ENDOMETRIUM	0	0.18	0.0511	FALSE	231	205	14	283	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND5--MT-CO3	4	5	MT-ND5	1808	chrM:13144:+	MT-CO3	5949	chrM:9343:+	INCL_NON_REF_SPLICE	YES	3584	5276	0	0	0.0341	0.0426	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	COLO684_ENDOMETRIUM	0	0	0.0767	FALSE	0	16	2	18	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND5--MT-CO3	3	9	MT-ND5	1727	chrM:13063:+	MT-CO3	5877	chrM:9271:+	INCL_NON_REF_SPLICE	YES	3765	0	0	1	0.0256	0.0767	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	COLO684_ENDOMETRIUM	0	1	0.1023	FALSE	0	16	1	17	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND6--MT-TE	3	9	MT-ND6	1261	chrM:14413:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0256	0.0767	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO684_ENDOMETRIUM	0.92	1	0.1023	FALSE	499	1288	110	792	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND6--MT-TE	5	1	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0.0085	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO684_ENDOMETRIUM	1	1	0.0511	FALSE	499	1288	110	792	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	AP000525.9--LA16c-60G3.6	3	8	AP000525.9	5082	chr22:16186811:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	78	0	0.12	1	0.0256	0.0682	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	COLO684_ENDOMETRIUM	0.12	1	0.0938	TRUE	0	3	0	6	3	TRUE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	4	4	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	8	0	0.5	1	0.0341	0.0341	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	0.5	1	0.0682	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TC	3	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0.0682	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO684_ENDOMETRIUM	1	1	0.0938	FALSE	462	80	0	856	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	3	7	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.77	0.0256	0.0596	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.77	1	0.0852	FALSE	344	821	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ND4L	4	2	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	8	0	0.43	1	0.0341	0.017	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO684_ENDOMETRIUM	0.43	1	0.0511	FALSE	344	821	44	306	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TC	3	6	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0.0511	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO684_ENDOMETRIUM	1	1	0.0767	FALSE	462	80	0	856	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	TUBB2B--MT-CO1	4	2	TUBB2B	4318	chr6:3225826:-	MT-CO1	9303	chrM:6557:+	INCL_NON_REF_SPLICE	YES	1048	17579	0.01	0	0.0341	0.017	TUBB2B->chr6:3224495-3231964:-,tubulin_beta_2B_class_IIb,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO684_ENDOMETRIUM	0	0.01	0.0511	FALSE	0	0	0	1	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ATP8	4	1	MT-ND4	1510	chrM:11269:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12357	27	0	0.16	0.0341	0.0085	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO684_ENDOMETRIUM	0	0.16	0.0426	FALSE	231	217	16	283	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND5--MT-CO3	3	5	MT-ND5	2217	chrM:13553:+	MT-CO3	6247	chrM:9641:+	INCL_NON_REF_SPLICE	YES	3949	11584	0	0	0.0256	0.0426	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	COLO684_ENDOMETRIUM	0	0	0.0682	FALSE	0	15	2	18	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND6--MT-TE	4	1	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0.0085	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO684_ENDOMETRIUM	1	1	0.0426	FALSE	499	1288	110	792	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	3	4	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	14	0	0.33	1	0.0256	0.0341	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	0.33	1	0.0597	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	3	4	MT-CO3	1083	chrM:9289:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	NO	2	0	0.78	1	0.0256	0.0341	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	0.78	1	0.0597	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND5--MT-CO3	3	4	MT-ND5	1643	chrM:12979:+	MT-CO3	5949	chrM:9343:+	INCL_NON_REF_SPLICE	YES	4680	5276	0	0	0.0256	0.0341	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	COLO684_ENDOMETRIUM	0	0	0.0597	FALSE	0	12	0	17	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO684_ENDOMETRIUM	1	1	0.0341	FALSE	499	1288	110	792	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	TULP4--RP11-732M18.3	4	0	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	COLO684_ENDOMETRIUM	1	1	0.0341	TRUE	126	140	6	21	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	ZNF654--HMGB2	4	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	COLO684_ENDOMETRIUM	1	1	0.0341	TRUE	0	0	0	518	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	CTD-2314B22.3--RP11-536C10.19	3	3	CTD-2314B22.3	5092	chr14:19919138:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	270	0	0.02	1	0.0256	0.0256	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	COLO684_ENDOMETRIUM	0.02	1	0.0512	TRUE	0	2	0	1	2	TRUE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	3	3	MT-CO3	1063	chrM:9269:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0.0256	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	1	1	0.0512	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	AREL1--PGF	3	0	AREL1	9096	chr14:75149999:-	PGF	36280	chr14:75412978:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	AREL1->apoptosis_resistant_E3_ubiquitin_protein_ligase_1,chr14:75120140-75179818:-,PGF->Oncogene{Bushman},chr14:75408537-75422487:-,placental_growth_factor	COLO684_ENDOMETRIUM	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	AREL1--PGF	3	0	AREL1	9096	chr14:75149999:-	PGF	38992	chr14:75409436:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	AREL1->apoptosis_resistant_E3_ubiquitin_protein_ligase_1,chr14:75120140-75179818:-,PGF->Oncogene{Bushman},chr14:75408537-75422487:-,placental_growth_factor	COLO684_ENDOMETRIUM	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	EEF2--GPI	3	0	EEF2	3218	chr19:3983250:-	GPI	29950	chr19:34890903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	COLO684_ENDOMETRIUM	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	MT-CO3--MT-ATP6	3	0	MT-CO3	1158	chrM:9364:+	MT-ATP6	5461	chrM:9203:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO684_ENDOMETRIUM	1	1	0.0256	FALSE	189	492	56	216	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND4--MT-ATP8	3	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO684_ENDOMETRIUM	1	1	0.0256	FALSE	231	204	14	283	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1051	chrM:14623:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO684_ENDOMETRIUM	1	1	0.0256	FALSE	499	1288	110	792	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	MT-TA--MT-TN	3	0	MT-TA	1020	chrM:5636:-	MT-TN	4113	chrM:5686:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0256	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COLO684_ENDOMETRIUM	1	1	0.0256	FALSE	369	2501	205	193	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	NAP1L1--TFDP1	3	0	NAP1L1	16885	chr12:76442980:-	TFDP1	25272	chr13:114240089:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	COLO684_ENDOMETRIUM	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	8	0.8	0.33	0.017	0.017	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	COLO684_ENDOMETRIUM	0.33	0.8	0.034	FALSE	16	356	14	466	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	RP11-108K3.1--GLDN	2	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.017	0.0085	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	COLO684_ENDOMETRIUM	0.75	1	0.0255	FALSE	1	20	0	46	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	RP11-108K3.1--GLDN	2	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	3	1	0.5	0.017	0.0085	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	COLO684_ENDOMETRIUM	0.5	1	0.0255	FALSE	0	30	1	55	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	CPSF6--SRSF1	2	0	CPSF6	11046	chr12:69656342:+	SRSF1	22199	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	COLO684_ENDOMETRIUM	1	1	0.017	TRUE	2	7	0	12	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	COLO684_ENDOMETRIUM	1	1	0.017	TRUE	0	9	0	44	1	FALSE	ACH-000864
COLO684_ENDOMETRIUM	KANSL1--ARL17B	2	0	KANSL1	9741	chr17:44171926:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	COLO684_ENDOMETRIUM	1	1	0.017	TRUE	51	25	1	17	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	KANSL1--ARL17B	1	4	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	50	34	0.09	0.13	0.0085	0.0341	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	COLO684_ENDOMETRIUM	0.09	0.13	0.0426	TRUE	105	90	7	93	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	KIF22--LSMD1	2	0	KIF22	1111	chr16:29802150:+	LSMD1	14539	chr17:7786653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	KIF22->chr16:29802040-29816706:+,kinesin_family_member_22,LSMD1->chr17:7760003-7788556:-	COLO684_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	RNF220--QSOX1	1	4	RNF220	5390	chr1:44878394:+	QSOX1	30449	chr1:180144456:+	ONLY_REF_SPLICE	YES	109	72	0.04	0.06	0.0085	0.0341	{Klijn_CCL:Ovary=1},RNF220->Oncogene{Bushman},chr1:44870866-45117396:+,ring_finger_protein_220,QSOX1->chr1:180123969-180173165:+,quiescin_sulfhydryl_oxidase_1	COLO684_ENDOMETRIUM	0.04	0.06	0.0426	TRUE	0	0	0	1	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	RP11-343J18.2--MVB12B	2	0	RP11-343J18.2	1235	chr9:128820093:+	MVB12B	9977	chr9:129143343:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	RP11-343J18.2->chr9:128819859-128921892:+,MVB12B->chr9:129089128-129269320:+,multivesicular_body_subunit_12B	COLO684_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	RP5-1103G7.4--NRSN2	2	0	RP5-1103G7.4	1125	chr20:328744:-	NRSN2	10343	chr20:329893:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	NEIGHBORS_OVERLAP:-:+:[1442],RP5-1103G7.4->chr20:300957-328868:-,NRSN2->chr20:327426-340304:+,neurensin_2	COLO684_ENDOMETRIUM	1	1	0.017	FALSE	0	1	0	2	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	RRP7A--PGAP3	2	0	RRP7A	1089	chr22:42915720:-	PGAP3	20946	chr17:37829119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	RRP7A->chr22:42905974-42915808:-,ribosomal_RNA_processing_7_homolog_A,PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3	COLO684_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COLO684_ENDOMETRIUM	1	1	0.017	TRUE	62	24	1	171	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	COLO684_ENDOMETRIUM	1	1	0.017	FALSE	272	151	14	158	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	WRN--RPL13A	2	0	WRN	3067	chr8:30916781:+	RPL13A	40651	chr19:49993489:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.017	0	WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	COLO684_ENDOMETRIUM	1	1	0.017	TRUE	0	0	0	1	0	TRUE	ACH-000864
COLO684_ENDOMETRIUM	NRIP1--AF127936.7	1	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	9	0	0.31	1	0.0085	0.0256	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO684_ENDOMETRIUM	0.31	1	0.0341	FALSE	125	705	46	456	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	3	0.75	0.5	0.0085	0.017	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	COLO684_ENDOMETRIUM	0.5	0.75	0.0255	FALSE	0	19	0	46	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	8	0.75	0.27	0.0085	0.017	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	COLO684_ENDOMETRIUM	0.27	0.75	0.0255	FALSE	0	48	1	163	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	AKT3--ADSS	1	1	AKT3	3500	chr1:244006427:-	ADSS	38307	chr1:244601070:-	ONLY_REF_SPLICE	YES	162	77	0.01	0.03	0.0085	0.0085	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,ADSS->adenylosuccinate_synthase,chr1:244571796-244615436:-	COLO684_ENDOMETRIUM	0.01	0.03	0.017	FALSE	0	1	0	4	1	FALSE	ACH-000864
COLO684_ENDOMETRIUM	DDX39A--RPS27A	1	1	DDX39A	1111	chr19:14530082:-	RPS27A	13012	chr2:55459944:+	ONLY_REF_SPLICE	YES	30	25	0.06	0.07	0.0085	0.0085	DDX39A->DEAD-box_helicase_39A,chr19:14519631-14530192:-,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	COLO684_ENDOMETRIUM	0.06	0.07	0.017	TRUE	0	0	0	1	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	GDAP1--RP11-758M4.1	1	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	157	0	0.01	1	0.0085	0.0085	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	COLO684_ENDOMETRIUM	0.01	1	0.017	FALSE	7	28	0	43	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	OAZ1--GNAS	1	1	OAZ1	1259	chr19:2269743:+	GNAS	23840	chr20:57470667:+	ONLY_REF_SPLICE	YES	2272	959	0	0	0.0085	0.0085	OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	COLO684_ENDOMETRIUM	0	0	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	TIMM23--RP11-464F9.1	1	1	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	30164	chr10:75439864:-	ONLY_REF_SPLICE	YES	201	13	0.01	0.13	0.0085	0.0085	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	COLO684_ENDOMETRIUM	0.01	0.13	0.017	FALSE	0	0	0	2	0	FALSE	ACH-000864
COLO684_ENDOMETRIUM	ZWINT--NIPSNAP1	1	1	ZWINT	3367	chr10:58118670:-	NIPSNAP1	10630	chr22:29966521:-	ONLY_REF_SPLICE	NO	174	270	0.01	0.01	0.0085	0.0085	ZWINT->ZW10_interacting_kinetochore_protein,chr10:58116989-58121036:-,NIPSNAP1->chr22:29950797-29977326:-,nipsnap_homolog_1_(C._elegans)	COLO684_ENDOMETRIUM	0.01	0.01	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000864
SCLC21H_LUNG	AGPAT6--DCTN6	573	4	AGPAT6	2092	chr8:41435797:+	DCTN6	22711	chr8:30021627:+	ONLY_REF_SPLICE	YES	1	1	1	1	6.5081	0.0454	AGPAT6->chr8:41434706-41482520:+,DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6	SCLC21H_LUNG	1	1	6.5535	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	RRS1--SDC2	215	66	RRS1	1509	chr8:67341771:+	SDC2	14463	chr8:97605708:+	INCL_NON_REF_SPLICE	YES	19	11	0.94	0.96	2.442	0.7496	RRS1->chr8:67341263-67342966:+,ribosome_biogenesis_regulator_homolog,SDC2->chr8:97505579-97624000:+,syndecan_2	SCLC21H_LUNG	0.94	0.96	3.1916	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SDC2--CTD-3025N20.2	178	44	SDC2	11004	chr8:97614756:+	CTD-3025N20.2	19618	chr8:66447099:-	ONLY_REF_SPLICE	YES	15	0	0.94	1	2.0217	0.4997	SDC2->chr8:97505579-97624000:+,syndecan_2,CTD-3025N20.2->chr8:66439243-66475015:-	SCLC21H_LUNG	0.94	1	2.5214	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	BAG4--OR7E15P	121	65	BAG4	1607	chr8:38034657:+	OR7E15P	12354	chr8:12554688:-	INCL_NON_REF_SPLICE	YES	38	0	0.83	1	1.3743	0.7383	BAG4->BCL2_associated_athanogene_4,chr8:38034051-38070819:+,OR7E15P->chr8:12553816-12554782:-,olfactory_receptor_family_7_subfamily_E_member_15_pseudogene	SCLC21H_LUNG	0.83	1	2.1126	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	RP11-680G10.1--GSE1	131	22	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	144	1	0.52	1.4879	0.2499	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SCLC21H_LUNG	0.52	1	1.7378	TRUE	465	1949	224	605	0	FALSE	ACH-000659
SCLC21H_LUNG	BAG4--OR7E15P	85	134	BAG4	2715	chr8:38050313:+	OR7E15P	12354	chr8:12554688:-	INCL_NON_REF_SPLICE	YES	15	0	0.94	1	0.9654	1.522	BAG4->BCL2_associated_athanogene_4,chr8:38034051-38070819:+,OR7E15P->chr8:12553816-12554782:-,olfactory_receptor_family_7_subfamily_E_member_15_pseudogene	SCLC21H_LUNG	0.94	1	2.4874	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SENP7--FAM167A	104	42	SENP7	4395	chr3:101177799:-	FAM167A	39048	chr8:11282145:-	ONLY_REF_SPLICE	YES	33	26	0.82	0.85	1.1812	0.477	SENP7->SUMO1/sentrin_specific_peptidase_7,chr3:101043049-101232085:-,FAM167A->chr8:11278972-11332224:-,family_with_sequence_similarity_167_member_A	SCLC21H_LUNG	0.82	0.85	1.6582	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	PRKDC--RP11-785H20.1	104	31	PRKDC	52152	chr8:48761715:-	RP11-785H20.1	89906	chr8:122901064:+	ONLY_REF_SPLICE	YES	56	0	0.71	1	1.1812	0.3521	PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,RP11-785H20.1->chr8:122896963-122916512:+	SCLC21H_LUNG	0.71	1	1.5333	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	EXT1--DCTN6	82	51	EXT1	2769	chr8:119122324:-	DCTN6	24436	chr8:30021627:+	ONLY_REF_SPLICE	YES	10	1	0.93	0.99	0.9314	0.5793	{Klijn_CCL:Lung=1},EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6	SCLC21H_LUNG	0.93	0.99	1.5107	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	TIMM23B--LINC00843	90	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0222	0.2044	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SCLC21H_LUNG	0.99	1	1.2266	TRUE	508	994	45	981	0	FALSE	ACH-000659
SCLC21H_LUNG	PDE7A--GS1-24F4.2	84	29	PDE7A	7679	chr8:66691955:-	GS1-24F4.2	28355	chr8:6699190:+	ONLY_REF_SPLICE	YES	11	5	0.91	0.96	0.9541	0.3294	PDE7A->chr8:66629745-66754557:-,phosphodiesterase_7A,GS1-24F4.2->chr8:6693076-6742798:+	SCLC21H_LUNG	0.91	0.96	1.2835	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	MMP16--CNGB3	84	22	MMP16	1951	chr8:89339304:-	CNGB3	31377	chr8:87683326:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.9541	0.2499	MMP16->chr8:89044237-89340254:-,matrix_metallopeptidase_16,CNGB3->chr8:87566205-87755903:-,cyclic_nucleotide_gated_channel_beta_3	SCLC21H_LUNG	1	1	1.204	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	APTX--DNAJA1	70	35	APTX	1365	chr9:33024802:-	DNAJA1	26353	chr9:33038683:+	ONLY_REF_SPLICE	YES	38	344	0.73	0.23	0.7951	0.3975	LOCAL_INVERSION:-:+:[43],APTX->aprataxin,chr9:32972604-33025166:-,DNAJA1->DnaJ_heat_shock_protein_family_(Hsp40)_member_A1,chr9:33025209-33039905:+	SCLC21H_LUNG	0.23	0.73	1.1926	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	RP11-680G10.1--GSE1	68	27	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	24	1	0.8	0.7723	0.3067	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SCLC21H_LUNG	0.8	1	1.079	TRUE	458	1351	185	561	0	FALSE	ACH-000659
SCLC21H_LUNG	PSIP1--FAM167A	65	18	PSIP1	1903	chr9:15510115:-	FAM167A	31969	chr8:11282145:-	ONLY_REF_SPLICE	YES	50	26	0.62	0.76	0.7383	0.2044	PSIP1->Oncogene{Bushman},PC4_and_SFRS1_interacting_protein_1,chr9:15464064-15511017:-,FAM167A->chr8:11278972-11332224:-,family_with_sequence_similarity_167_member_A	SCLC21H_LUNG	0.62	0.76	0.9427	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	OR51S1--TP53I11	65	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7383	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SCLC21H_LUNG	1	1	0.7383	TRUE	402	216	10	229	0	FALSE	ACH-000659
SCLC21H_LUNG	DNAJA1--CHST9	61	15	DNAJA1	7577	chr9:33037113:+	CHST9	17631	chr18:24524330:-	ONLY_REF_SPLICE	YES	364	7	0.17	0.92	0.6928	0.1704	DNAJA1->DnaJ_heat_shock_protein_family_(Hsp40)_member_A1,chr9:33025209-33039905:+,CHST9->carbohydrate_sulfotransferase_9,chr18:24495595-24765281:-	SCLC21H_LUNG	0.17	0.92	0.8632	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	AGPAT6--DCTN6	54	3	AGPAT6	2092	chr8:41435797:+	DCTN6	24962	chr8:30032601:+	ONLY_REF_SPLICE	YES	1	22	0.98	0.72	0.6133	0.0341	AGPAT6->chr8:41434706-41482520:+,DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6	SCLC21H_LUNG	0.72	0.98	0.6474	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	TIMM23--RP11-464F9.1	53	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	141	0	0.28	1	0.602	0.0341	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SCLC21H_LUNG	0.28	1	0.6361	TRUE	519	3926	326	965	0	FALSE	ACH-000659
SCLC21H_LUNG	ZNF654--HMGB2	52	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5906	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SCLC21H_LUNG	1	1	0.5906	TRUE	0	0	0	518	0	FALSE	ACH-000659
SCLC21H_LUNG	SDC2--RP11-758M4.4	38	30	SDC2	11004	chr8:97614756:+	RP11-758M4.4	21971	chr8:75730903:-	ONLY_REF_SPLICE	YES	15	0	0.82	1	0.4316	0.3407	SDC2->chr8:97505579-97624000:+,syndecan_2,RP11-758M4.4->chr8:75711019-75779174:-	SCLC21H_LUNG	0.82	1	0.7723	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	RP11-123O10.4--GRIP1	41	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	2	1	0.96	0.4657	0.1022	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SCLC21H_LUNG	0.96	1	0.5679	FALSE	416	2512	207	587	0	FALSE	ACH-000659
SCLC21H_LUNG	MMP16--CNGB3	31	35	MMP16	1951	chr8:89339304:-	CNGB3	29923	chr8:87716630:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3521	0.3975	MMP16->chr8:89044237-89340254:-,matrix_metallopeptidase_16,CNGB3->chr8:87566205-87755903:-,cyclic_nucleotide_gated_channel_beta_3	SCLC21H_LUNG	1	1	0.7496	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	DPH7--PTP4A3	39	0	DPH7	1297	chr9:140473091:-	PTP4A3	14726	chr8:142431487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.443	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:10=pct:2.7],Heart=[count:7=pct:2.8],Pituitary=[count:4=pct:7.7],Nerve=[count:2=pct:1.2],Esophagus=[count:2=pct:0.5],Colon=[count:2=pct:1.0],Lung=[count:2=pct:1.2],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Kidney=[count:1=pct:7.1],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},GTEx_v2:{count=46;pct=0.53%;dist=Artery_-_Tibial=9,Heart_-_Atrial_Appendage=9,Pituitary=6,Cells_-_EBV-transformed_lymphocytes=5,Artery_-_Aorta=3,Lung=2,Artery_-_Coronary=2,Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hypothalamus=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1,Testis=1},DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7,PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3	SCLC21H_LUNG	1	1	0.443	TRUE	29	213	5	17	0	FALSE	ACH-000659
SCLC21H_LUNG	MT-TA--MT-TC	37	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4202	0.0568	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCLC21H_LUNG	1	1	0.477	FALSE	462	80	0	856	0	FALSE	ACH-000659
SCLC21H_LUNG	BAG4--OR7E15P	3	125	BAG4	2715	chr8:38050313:+	OR7E15P	12357	chr8:12554685:-	INCL_NON_REF_SPLICE	YES	15	0	0.9	1	0.0341	1.4197	BAG4->BCL2_associated_athanogene_4,chr8:38034051-38070819:+,OR7E15P->chr8:12553816-12554782:-,olfactory_receptor_family_7_subfamily_E_member_15_pseudogene	SCLC21H_LUNG	0.9	1	1.4538	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SDC2--RP11-758M4.4	31	13	SDC2	11004	chr8:97614756:+	RP11-758M4.4	25589	chr8:75711554:-	ONLY_REF_SPLICE	YES	15	0	0.75	1	0.3521	0.1477	SDC2->chr8:97505579-97624000:+,syndecan_2,RP11-758M4.4->chr8:75711019-75779174:-	SCLC21H_LUNG	0.75	1	0.4998	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	NRIP1--AF127936.7	28	18	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	3	1	0.94	0.98	0.318	0.2044	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCLC21H_LUNG	0.94	0.98	0.5224	FALSE	8	57	1	47	0	FALSE	ACH-000659
SCLC21H_LUNG	EXT1--DCTN6	17	35	EXT1	2769	chr8:119122324:-	DCTN6	26687	chr8:30032601:+	ONLY_REF_SPLICE	YES	10	22	0.84	0.7	0.1931	0.3975	{Klijn_CCL:Lung=1},EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6	SCLC21H_LUNG	0.7	0.84	0.5906	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	FUT10--SFRP1	25	0	FUT10	1359	chr8:33330582:-	SFRP1	21436	chr8:41123008:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2839	0	FUT10->chr8:33228342-33330940:-,fucosyltransferase_10,SFRP1->chr8:41119481-41167016:-,secreted_frizzled-related_protein_1	SCLC21H_LUNG	1	1	0.2839	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	DNMT3A--ADCY3	20	11	DNMT3A	9100	chr2:25475063:-	ADCY3	28027	chr2:25142053:-	ONLY_REF_SPLICE	YES	13	3	0.7	0.91	0.2272	0.1249	{Klijn_CCL:Lung=1},DNMT3A->ArcherDX_panel,DNA_(cytosine-5-)-methyltransferase_3_alpha,FoundationOne_panel,Oncogene{Bushman},chr2:25455845-25565459:-,ADCY3->adenylate_cyclase_3,chr2:25042038-25142708:-	SCLC21H_LUNG	0.7	0.91	0.3521	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SDC2--CTD-3025N20.2	20	7	SDC2	11004	chr8:97614756:+	CTD-3025N20.2	24304	chr8:66439820:-	ONLY_REF_SPLICE	YES	15	34	0.64	0.44	0.2272	0.0795	SDC2->chr8:97505579-97624000:+,syndecan_2,CTD-3025N20.2->chr8:66439243-66475015:-	SCLC21H_LUNG	0.44	0.64	0.3067	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	KIF3A--SHROOM1	19	3	KIF3A	4509	chr5:132061820:-	SHROOM1	26872	chr5:132161874:-	ONLY_REF_SPLICE	YES	32	5	0.41	0.81	0.2158	0.0341	LOCAL_REARRANGEMENT:-:[84503],KIF3A->chr5:132028320-132073330:-,kinesin_family_member_3A,SHROOM1->chr5:132157833-132166590:-,shroom_family_member_1	SCLC21H_LUNG	0.41	0.81	0.2499	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	RP4-565E6.1--HYDIN	18	7	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	5	1	0.83	0.2044	0.0795	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SCLC21H_LUNG	0.83	1	0.2839	TRUE	456	1387	91	133	0	FALSE	ACH-000659
SCLC21H_LUNG	HSP90AB1--MT-RNR2	18	6	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4504	0	0.01	1	0.2044	0.0681	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SCLC21H_LUNG	0.01	1	0.2725	FALSE	13	9	0	364	0	FALSE	ACH-000659
SCLC21H_LUNG	C1orf194--UQCR10	14	8	C1orf194	3284	chr1:109650635:-	UQCR10	8361	chr22:30163372:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.159	0.0909	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.41%,GTEx_FI:{Testis=[count:16=pct:15.2],Pituitary=[count:4=pct:7.7],Lung=[count:4=pct:2.4],Brain=[count:3=pct:0.5],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Fallopian_Tube=[count:1=pct:16.7],Thyroid=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=13;pct=0.15%;dist=Testis=12,Adipose_-_Subcutaneous=1},C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	SCLC21H_LUNG	0.96	1	0.2499	TRUE	26	6	0	14	0	FALSE	ACH-000659
SCLC21H_LUNG	HMBOX1--RP11-317N12.1	15	1	HMBOX1	1285	chr8:28748195:+	RP11-317N12.1	28566	chr8:33653812:+	ONLY_REF_SPLICE	YES	8	0	0.67	1	0.1704	0.0114	HMBOX1->chr8:28747911-28922281:+,homeobox_containing_1,RP11-317N12.1->chr8:33462374-33896526:+	SCLC21H_LUNG	0.67	1	0.1818	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	RP11-1023L17.1--NUP98	13	7	RP11-1023L17.1	4445	chr5:34218400:-	NUP98	24925	chr11:3794969:-	ONLY_REF_SPLICE	YES	24	53	0.45	0.27	0.1477	0.0795	RP11-1023L17.1->chr5:34164803-34244901:-,NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa	SCLC21H_LUNG	0.27	0.45	0.2272	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	NRIP1--AF127936.7	13	6	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	4	1	0.83	0.95	0.1477	0.0681	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCLC21H_LUNG	0.83	0.95	0.2158	FALSE	7	44	2	41	0	FALSE	ACH-000659
SCLC21H_LUNG	TNFRSF21--PTCHD4	13	6	TNFRSF21	5903	chr6:47220992:-	PTCHD4	18864	chr6:47847672:-	ONLY_REF_SPLICE	YES	77	0	0.2	1	0.1477	0.0681	TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21,PTCHD4->chr6:47845764-48036425:-,patched_domain_containing_4	SCLC21H_LUNG	0.2	1	0.2158	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	EYA1--GS1-57L11.1	13	0	EYA1	12929	chr8:72156838:-	GS1-57L11.1	24986	chr8:2662104:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1477	0	EYA1->EYA_transcriptional_coactivator_and_phosphatase_1,chr8:72109668-72274467:-,GS1-57L11.1->chr8:2584858-2680004:+	SCLC21H_LUNG	1	1	0.1477	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	RP11-317N12.1--RP11-89M16.1	12	4	RP11-317N12.1	4633	chr8:33653954:+	RP11-89M16.1	12870	chr8:129573372:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1363	0.0454	RP11-317N12.1->chr8:33462374-33896526:+,RP11-89M16.1->chr8:129417515-129576925:-	SCLC21H_LUNG	0.94	1	0.1817	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	DNAJA1--CHST9	10	11	DNAJA1	7577	chr9:33037113:+	CHST9	18669	chr18:24497314:-	ONLY_REF_SPLICE	YES	364	7	0.05	0.75	0.1136	0.1249	DNAJA1->DnaJ_heat_shock_protein_family_(Hsp40)_member_A1,chr9:33025209-33039905:+,CHST9->carbohydrate_sulfotransferase_9,chr18:24495595-24765281:-	SCLC21H_LUNG	0.05	0.75	0.2385	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	UBXN8--BMP1	10	8	UBXN8	10731	chr8:30620863:+	BMP1	23116	chr8:22037218:+	ONLY_REF_SPLICE	YES	18	7	0.5	0.72	0.1136	0.0909	UBXN8->UBX_domain_protein_8,chr8:30589764-30624522:+,BMP1->bone_morphogenetic_protein_1,chr8:22022249-22069839:+	SCLC21H_LUNG	0.5	0.72	0.2045	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	DNMT3A--ADCY3	10	7	DNMT3A	7982	chr2:25497810:-	ADCY3	28027	chr2:25142053:-	ONLY_REF_SPLICE	YES	7	3	0.71	0.85	0.1136	0.0795	{Klijn_CCL:Lung=1},DNMT3A->ArcherDX_panel,DNA_(cytosine-5-)-methyltransferase_3_alpha,FoundationOne_panel,Oncogene{Bushman},chr2:25455845-25565459:-,ADCY3->adenylate_cyclase_3,chr2:25042038-25142708:-	SCLC21H_LUNG	0.71	0.85	0.1931	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SPIDR--GATA4	8	15	SPIDR	7740	chr8:48206619:+	GATA4	39834	chr8:11534430:+	INCL_NON_REF_SPLICE	YES	84	0	0.21	1	0.0909	0.1704	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+	SCLC21H_LUNG	0.21	1	0.2613	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	RP11-120D5.1--MID1	10	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	3	0.94	0.83	0.1136	0.0568	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SCLC21H_LUNG	0.83	0.94	0.1704	FALSE	16	356	14	466	0	FALSE	ACH-000659
SCLC21H_LUNG	EXT1--DCTN6	6	19	EXT1	2769	chr8:119122324:-	DCTN6	27793	chr8:30034642:+	ONLY_REF_SPLICE	YES	10	241	0.71	0.09	0.0681	0.2158	{Klijn_CCL:Lung=1},EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6	SCLC21H_LUNG	0.09	0.71	0.2839	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	HSP90AB1--MT-RNR2	9	5	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4547	0	0	1	0.1022	0.0568	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SCLC21H_LUNG	0	1	0.159	FALSE	13	9	0	364	0	FALSE	ACH-000659
SCLC21H_LUNG	SPIDR--GATA4	7	12	SPIDR	7740	chr8:48206619:+	GATA4	42012	chr8:11558017:+	ONLY_REF_SPLICE	YES	84	0	0.18	1	0.0795	0.1363	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+	SCLC21H_LUNG	0.18	1	0.2158	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	APTX--DNAJA1	1	35	APTX	1365	chr9:33024802:-	DNAJA1	21248	chr9:33029883:+	ONLY_REF_SPLICE	YES	38	378	0.49	0.09	0.0114	0.3975	LOCAL_INVERSION:-:+:[43],APTX->aprataxin,chr9:32972604-33025166:-,DNAJA1->DnaJ_heat_shock_protein_family_(Hsp40)_member_A1,chr9:33025209-33039905:+	SCLC21H_LUNG	0.09	0.49	0.4089	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	CDK8--FGF14	8	7	CDK8	4959	chr13:26928017:+	FGF14	20635	chr13:102527646:-	ONLY_REF_SPLICE	YES	54	1	0.22	0.94	0.0909	0.0795	CDK8->ArcherDX_panel,FoundationOne_panel,chr13:26828276-26979375:+,cyclin-dependent_kinase_8,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	SCLC21H_LUNG	0.22	0.94	0.1704	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SDC2--RP11-758M4.4	2	31	SDC2	11004	chr8:97614756:+	RP11-758M4.4	18748	chr8:75778869:-	ONLY_REF_SPLICE	YES	15	0	0.69	1	0.0227	0.3521	SDC2->chr8:97505579-97624000:+,syndecan_2,RP11-758M4.4->chr8:75711019-75779174:-	SCLC21H_LUNG	0.69	1	0.3748	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	FUT10--CTD-3080F16.3	9	0	FUT10	1359	chr8:33330582:-	CTD-3080F16.3	18249	chr8:41132846:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1022	0	FUT10->chr8:33228342-33330940:-,fucosyltransferase_10,CTD-3080F16.3->chr8:41132634-41134522:-	SCLC21H_LUNG	1	1	0.1022	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	AC093642.5--XX-C2158C6.2	7	7	AC093642.5	6865	chr2:243064606:+	XX-C2158C6.2	15418	chr6:171054606:+	ONLY_REF_SPLICE	YES	20	0	0.41	1	0.0795	0.0795	AC093642.5->chr2:243030784-243102304:+,XX-C2158C6.2->chr6:171054606-171055065:+	SCLC21H_LUNG	0.41	1	0.159	TRUE	0	0	0	2	0	TRUE	ACH-000659
SCLC21H_LUNG	NRIP1--AF127936.7	4	18	NRIP1	4648	chr21:16374501:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	3	1	0.88	0.96	0.0454	0.2044	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCLC21H_LUNG	0.88	0.96	0.2498	FALSE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	SDC2--RP11-758M4.4	1	30	SDC2	11004	chr8:97614756:+	RP11-758M4.4	19865	chr8:75758188:-	ONLY_REF_SPLICE	YES	15	0	0.67	1	0.0114	0.3407	SDC2->chr8:97505579-97624000:+,syndecan_2,RP11-758M4.4->chr8:75711019-75779174:-	SCLC21H_LUNG	0.67	1	0.3521	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	ZFAT--ZMAT4	8	1	ZFAT	25315	chr8:135524718:-	ZMAT4	39595	chr8:40625249:-	ONLY_REF_SPLICE	YES	8	1	0.53	0.9	0.0909	0.0114	ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing,ZMAT4->chr8:40388109-40755352:-,zinc_finger_matrin-type_4	SCLC21H_LUNG	0.53	0.9	0.1023	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	CUL2--FAM167A	7	4	CUL2	1213	chr10:35379358:-	FAM167A	35282	chr8:11282145:-	ONLY_REF_SPLICE	YES	9	26	0.55	0.3	0.0795	0.0454	CUL2->chr10:35297479-35379570:-,cullin_2,FAM167A->chr8:11278972-11332224:-,family_with_sequence_similarity_167_member_A	SCLC21H_LUNG	0.3	0.55	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	DNMT3A--ADCY3	7	4	DNMT3A	7982	chr2:25497810:-	ADCY3	31005	chr2:25095588:-	ONLY_REF_SPLICE	YES	7	57	0.61	0.16	0.0795	0.0454	{Klijn_CCL:Lung=1},DNMT3A->ArcherDX_panel,DNA_(cytosine-5-)-methyltransferase_3_alpha,FoundationOne_panel,Oncogene{Bushman},chr2:25455845-25565459:-,ADCY3->adenylate_cyclase_3,chr2:25042038-25142708:-	SCLC21H_LUNG	0.16	0.61	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	PSIP1--FAM167A	7	4	PSIP1	1203	chr9:15510815:-	FAM167A	31969	chr8:11282145:-	ONLY_REF_SPLICE	YES	0	26	1	0.3	0.0795	0.0454	PSIP1->Oncogene{Bushman},PC4_and_SFRS1_interacting_protein_1,chr9:15464064-15511017:-,FAM167A->chr8:11278972-11332224:-,family_with_sequence_similarity_167_member_A	SCLC21H_LUNG	0.3	1	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	RNF152--RP11-879F14.1	8	0	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0909	0	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	SCLC21H_LUNG	1	1	0.0909	FALSE	275	472	65	43	0	FALSE	ACH-000659
SCLC21H_LUNG	SDC2--CTD-3025N20.2	4	16	SDC2	11004	chr8:97614756:+	CTD-3025N20.2	20755	chr8:66445359:-	ONLY_REF_SPLICE	YES	15	9	0.57	0.69	0.0454	0.1817	SDC2->chr8:97505579-97624000:+,syndecan_2,CTD-3025N20.2->chr8:66439243-66475015:-	SCLC21H_LUNG	0.57	0.69	0.2271	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	AC093642.5--XX-C2158C6.2	5	9	AC093642.5	9202	chr2:243081039:+	XX-C2158C6.2	15418	chr6:171054606:+	ONLY_REF_SPLICE	YES	12	0	0.54	1	0.0568	0.1022	AC093642.5->chr2:243030784-243102304:+,XX-C2158C6.2->chr6:171054606-171055065:+	SCLC21H_LUNG	0.54	1	0.159	TRUE	0	1	0	2	1	TRUE	ACH-000659
SCLC21H_LUNG	SENP7--FAM167A	3	17	SENP7	3297	chr3:101212717:-	FAM167A	39048	chr8:11282145:-	ONLY_REF_SPLICE	YES	49	26	0.29	0.43	0.0341	0.1931	SENP7->SUMO1/sentrin_specific_peptidase_7,chr3:101043049-101232085:-,FAM167A->chr8:11278972-11332224:-,family_with_sequence_similarity_167_member_A	SCLC21H_LUNG	0.29	0.43	0.2272	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	TPD52--RP11-1149M10.2	7	1	TPD52	6214	chr8:81083660:-	RP11-1149M10.2	31481	chr8:82070817:+	ONLY_REF_SPLICE	YES	118	28	0.06	0.22	0.0795	0.0114	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,RP11-1149M10.2->chr8:82066514-82076834:+	SCLC21H_LUNG	0.06	0.22	0.0909	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	EIF1--RPS28	7	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0795	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SCLC21H_LUNG	1	1	0.0795	TRUE	0	0	0	81	0	FALSE	ACH-000659
SCLC21H_LUNG	GNGT1--AC002076.10	7	0	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0795	0	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	SCLC21H_LUNG	1	1	0.0795	FALSE	0	28	0	37	0	FALSE	ACH-000659
SCLC21H_LUNG	KIF3A--SEPT8	6	4	KIF3A	4509	chr5:132061820:-	SEPT8	29949	chr5:132101221:-	ONLY_REF_SPLICE	YES	32	32	0.24	0.24	0.0681	0.0454	LOCAL_REARRANGEMENT:-:[13179],KIF3A->chr5:132028320-132073330:-,kinesin_family_member_3A,SEPT8->chr5:132086509-132142933:-,septin_8	SCLC21H_LUNG	0.24	0.24	0.1135	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	MT-TA--MT-TC	6	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0681	0.0341	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCLC21H_LUNG	1	1	0.1022	FALSE	462	80	0	856	0	FALSE	ACH-000659
SCLC21H_LUNG	ATP6V1H--OXR1	6	2	ATP6V1H	14490	chr8:54708207:-	OXR1	25992	chr8:107371704:+	ONLY_REF_SPLICE	YES	68	0	0.11	1	0.0681	0.0227	ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-,OXR1->chr8:107282473-107764922:+,oxidation_resistance_1	SCLC21H_LUNG	0.11	1	0.0908	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	NRIP1--AF127936.7	2	18	NRIP1	3459	chr21:16386665:-	AF127936.7	19658	chr21:16210144:-	ONLY_REF_SPLICE	YES	3	1	0.87	0.95	0.0227	0.2044	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCLC21H_LUNG	0.87	0.95	0.2271	FALSE	0	2	1	3	0	FALSE	ACH-000659
SCLC21H_LUNG	AC093642.5--XX-C2158C6.2	5	5	AC093642.5	2310	chr2:243037178:+	XX-C2158C6.2	15418	chr6:171054606:+	ONLY_REF_SPLICE	YES	47	0	0.18	1	0.0568	0.0568	AC093642.5->chr2:243030784-243102304:+,XX-C2158C6.2->chr6:171054606-171055065:+	SCLC21H_LUNG	0.18	1	0.1136	TRUE	0	2	0	2	2	TRUE	ACH-000659
SCLC21H_LUNG	RP11-123O10.4--GRIP1	5	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	2	1	0.83	0.0568	0.0568	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SCLC21H_LUNG	0.83	1	0.1136	FALSE	93	270	15	244	0	FALSE	ACH-000659
SCLC21H_LUNG	SPIDR--GATA4	6	1	SPIDR	7740	chr8:48206619:+	GATA4	47633	chr8:11606428:+	ONLY_REF_SPLICE	YES	84	0	0.08	1	0.0681	0.0114	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+	SCLC21H_LUNG	0.08	1	0.0795	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	KANSL1--LRRC37A	6	0	KANSL1	7536	chr17:44248221:-	LRRC37A	44523	chr17:44407816:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0681	0	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	SCLC21H_LUNG	1	1	0.0681	TRUE	9	3	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	RP11-1L12.3--SLC5A12	5	4	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.0568	0.0454	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	SCLC21H_LUNG	0.75	1	0.1022	TRUE	3	101	0	60	0	FALSE	ACH-000659
SCLC21H_LUNG	RP11-1023L17.1--NUP98	4	6	RP11-1023L17.1	4445	chr5:34218400:-	NUP98	26033	chr11:3793158:-	ONLY_REF_SPLICE	YES	24	47	0.29	0.18	0.0454	0.0681	RP11-1023L17.1->chr5:34164803-34244901:-,NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa	SCLC21H_LUNG	0.18	0.29	0.1135	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	AGPAT6--DCTN6	5	1	AGPAT6	2092	chr8:41435797:+	DCTN6	26068	chr8:30034642:+	ONLY_REF_SPLICE	YES	1	241	0.86	0.02	0.0568	0.0114	AGPAT6->chr8:41434706-41482520:+,DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6	SCLC21H_LUNG	0.02	0.86	0.0682	TRUE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	C8orf47--FZD6	5	1	C8orf47	1417	chr8:99076955:+	FZD6	9285	chr8:104312184:+	ONLY_REF_SPLICE	YES	12	27	0.33	0.18	0.0568	0.0114	C8orf47->chr8:99076539-99105838:+,FZD6->chr8:104310661-104345094:+,frizzled_class_receptor_6	SCLC21H_LUNG	0.18	0.33	0.0682	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	EIF1--RPS28	5	1	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	95	1	0.06	0.86	0.0568	0.0114	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SCLC21H_LUNG	0.06	0.86	0.0682	TRUE	0	0	0	81	0	FALSE	ACH-000659
SCLC21H_LUNG	GATS--PILRB	5	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	41	123	0.13	0.05	0.0568	0.0114	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	SCLC21H_LUNG	0.05	0.13	0.0682	TRUE	57	41	2	35	0	FALSE	ACH-000659
SCLC21H_LUNG	RP11-785H20.1--RP11-758M4.1	5	1	RP11-785H20.1	2314	chr8:122901216:+	RP11-758M4.1	8284	chr8:75525088:+	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0568	0.0114	RP11-785H20.1->chr8:122896963-122916512:+,RP11-758M4.1->chr8:75512010-75735548:+	SCLC21H_LUNG	0.67	1	0.0682	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	AGPAT6--DCTN6	4	4	AGPAT6	2092	chr8:41435797:+	DCTN6	21650	chr8:30013862:+	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0454	0.0454	AGPAT6->chr8:41434706-41482520:+,DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6	SCLC21H_LUNG	0.89	1	0.0908	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	LINC01036--LINC01037	5	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0568	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SCLC21H_LUNG	1	1	0.0568	FALSE	0	24	0	62	0	FALSE	ACH-000659
SCLC21H_LUNG	RP11-120D5.1--MID1	4	4	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	3	0.89	0.73	0.0454	0.0454	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SCLC21H_LUNG	0.73	0.89	0.0908	FALSE	0	48	1	163	0	FALSE	ACH-000659
SCLC21H_LUNG	RP11-680G10.1--GSE1	3	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	248	1	0.04	0.0341	0.0681	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SCLC21H_LUNG	0.04	1	0.1022	TRUE	64	13	3	59	0	FALSE	ACH-000659
SCLC21H_LUNG	APTX--DNAJA1	2	9	APTX	1169	chr9:33024998:-	DNAJA1	26353	chr9:33038683:+	ONLY_REF_SPLICE	YES	32	344	0.26	0.03	0.0227	0.1022	LOCAL_INVERSION:-:+:[43],APTX->aprataxin,chr9:32972604-33025166:-,DNAJA1->DnaJ_heat_shock_protein_family_(Hsp40)_member_A1,chr9:33025209-33039905:+	SCLC21H_LUNG	0.03	0.26	0.1249	TRUE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	MT-TA--MT-TC	3	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0.0568	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCLC21H_LUNG	1	1	0.0909	FALSE	462	80	0	856	0	FALSE	ACH-000659
SCLC21H_LUNG	RP11-108K3.1--GLDN	4	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0454	0.0114	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SCLC21H_LUNG	1	1	0.0568	FALSE	1	20	0	46	0	FALSE	ACH-000659
SCLC21H_LUNG	RP11-120D5.1--MID1	3	5	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	1	3	0.89	0.73	0.0341	0.0568	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SCLC21H_LUNG	0.73	0.89	0.0909	FALSE	0	9	0	55	0	FALSE	ACH-000659
SCLC21H_LUNG	SPIDR--GATA4	1	12	SPIDR	7740	chr8:48206619:+	GATA4	42015	chr8:11558020:+	ONLY_REF_SPLICE	NO	84	0	0.13	1	0.0114	0.1363	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+	SCLC21H_LUNG	0.13	1	0.1477	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	NRIP1--AF127936.7	2	7	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.69	1	0.0227	0.0795	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCLC21H_LUNG	0.69	1	0.1022	FALSE	125	705	46	456	0	FALSE	ACH-000659
SCLC21H_LUNG	RP11-371M22.1--KCNN2	3	3	RP11-371M22.1	2166	chr5:113392868:+	KCNN2	5170	chr5:113696642:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0.0341	GTEx_FI:{Stomach=[count:1=pct:1.1],Heart=[count:1=pct:0.4]},RP11-371M22.1->chr5:113391703-113392871:+,KCNN2->chr5:113696642-113832337:+,potassium_calcium-activated_channel_subfamily_N_member_2	SCLC21H_LUNG	1	1	0.0682	TRUE	2	0	0	3	0	FALSE	ACH-000659
SCLC21H_LUNG	DNAJA1--CHST9	2	6	DNAJA1	7151	chr9:33036687:+	CHST9	17631	chr18:24524330:-	ONLY_REF_SPLICE	YES	397	7	0.02	0.53	0.0227	0.0681	DNAJA1->DnaJ_heat_shock_protein_family_(Hsp40)_member_A1,chr9:33025209-33039905:+,CHST9->carbohydrate_sulfotransferase_9,chr18:24495595-24765281:-	SCLC21H_LUNG	0.02	0.53	0.0908	TRUE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	KANSL1--LRRC37A	2	6	KANSL1	8599	chr17:44230270:-	LRRC37A	37753	chr17:44377160:+	ONLY_REF_SPLICE	YES	69	3	0.1	0.73	0.0227	0.0681	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	SCLC21H_LUNG	0.1	0.73	0.0908	TRUE	9	6	1	5	0	FALSE	ACH-000659
SCLC21H_LUNG	KIAA1958--SNX30	3	2	KIAA1958	3467	chr9:115337531:+	SNX30	22440	chr9:115567056:+	ONLY_REF_SPLICE	YES	52	6	0.09	0.45	0.0341	0.0227	{Klijn_CCL:Lung=1,Colo-Rectal=1},NEIGHBORS[81441],KIAA1958->KIAA1958,chr9:115249127-115431677:+,SNX30->chr9:115513118-115643951:+,sorting_nexin_family_member_30	SCLC21H_LUNG	0.09	0.45	0.0568	FALSE	5	9	0	7	0	FALSE	ACH-000659
SCLC21H_LUNG	LDLRAD3--PRR5L	3	2	LDLRAD3	5673	chr11:36120011:+	PRR5L	34366	chr11:36422547:+	ONLY_REF_SPLICE	YES	12	0	0.29	1	0.0341	0.0227	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	SCLC21H_LUNG	0.29	1	0.0568	FALSE	12	71	0	11	0	FALSE	ACH-000659
SCLC21H_LUNG	CMTM8--CMTM7	3	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0341	0.0114	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	SCLC21H_LUNG	0.19	1	0.0455	FALSE	118	557	29	88	0	FALSE	ACH-000659
SCLC21H_LUNG	RP11-1023L17.1--NUP98	3	1	RP11-1023L17.1	4445	chr5:34218400:-	NUP98	27214	chr11:3789974:-	ONLY_REF_SPLICE	YES	24	94	0.14	0.04	0.0341	0.0114	RP11-1023L17.1->chr5:34164803-34244901:-,NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa	SCLC21H_LUNG	0.04	0.14	0.0455	TRUE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	APTX--DNAJA1	3	0	APTX	1146	chr9:33025021:-	DNAJA1	26353	chr9:33038683:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	LOCAL_INVERSION:-:+:[43],APTX->aprataxin,chr9:32972604-33025166:-,DNAJA1->DnaJ_heat_shock_protein_family_(Hsp40)_member_A1,chr9:33025209-33039905:+	SCLC21H_LUNG	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	CTC-786C10.1--GSE1	1	8	CTC-786C10.1	1532	chr16:85205413:+	GSE1	8143	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	24	1	0.27	0.0114	0.0909	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SCLC21H_LUNG	0.27	1	0.1023	TRUE	5	1	0	10	0	FALSE	ACH-000659
SCLC21H_LUNG	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	SCLC21H_LUNG	1	1	0.0341	TRUE	22	156	2	142	0	FALSE	ACH-000659
SCLC21H_LUNG	STX18-AS1--MSX1	3	0	STX18-AS1	2665	chr4:4546634:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	SCLC21H_LUNG	1	1	0.0341	TRUE	3	17	0	6	0	FALSE	ACH-000659
SCLC21H_LUNG	UBXN8--BMP1	2	4	UBXN8	10731	chr8:30620863:+	BMP1	24895	chr8:22049562:+	ONLY_REF_SPLICE	YES	18	16	0.25	0.27	0.0227	0.0454	UBXN8->UBX_domain_protein_8,chr8:30589764-30624522:+,BMP1->bone_morphogenetic_protein_1,chr8:22022249-22069839:+	SCLC21H_LUNG	0.25	0.27	0.0681	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	XKR5--MTFR1	3	0	XKR5	5926	chr8:6681043:-	MTFR1	33472	chr8:66683182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	XKR5->XK_related_5,chr8:6666038-6693166:-,MTFR1->chr8:66556969-66683496:+,mitochondrial_fission_regulator_1	SCLC21H_LUNG	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	ZHX2--ATP6V1C1	3	0	ZHX2	1553	chr8:123794185:+	ATP6V1C1	12878	chr8:104053026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	ZHX2->chr8:123793633-123986750:+,zinc_fingers_and_homeoboxes_2,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+	SCLC21H_LUNG	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SCNN1D--ZFAT	2	3	SCNN1D	1231	chr1:1216046:+	ZFAT	30057	chr8:135602598:-	ONLY_REF_SPLICE	YES	7	12	0.42	0.29	0.0227	0.0341	SCNN1D->chr1:1215816-1227409:+,sodium_channel_epithelial_1_delta_subunit,ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing	SCLC21H_LUNG	0.29	0.42	0.0568	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SPIDR--GATA4	1	7	SPIDR	7740	chr8:48206619:+	GATA4	45557	chr8:11565365:+	ONLY_REF_SPLICE	NO	84	2	0.09	0.8	0.0114	0.0795	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+	SCLC21H_LUNG	0.09	0.8	0.0909	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SPIDR--GATA4	2	3	SPIDR	6576	chr8:48203726:+	GATA4	42012	chr8:11558017:+	ONLY_REF_SPLICE	YES	48	0	0.09	1	0.0227	0.0341	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+	SCLC21H_LUNG	0.09	1	0.0568	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	C8orf12--POP1	2	2	C8orf12	4652	chr8:11258674:+	POP1	22358	chr8:99158796:+	ONLY_REF_SPLICE	NO	3	5	0.57	0.44	0.0227	0.0227	{Klijn_CCL:Lung=1},C8orf12->chr8:11225911-11296167:+,POP1->POP1_homolog,_ribonuclease_P/MRP_subunit,chr8:99129525-99172062:+	SCLC21H_LUNG	0.44	0.57	0.0454	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	LRRC38--POP1	2	2	LRRC38	2086	chr1:13839458:-	POP1	21668	chr8:99168278:+	ONLY_REF_SPLICE	YES	1	40	0.8	0.09	0.0227	0.0227	LRRC38->chr1:13801445-13840543:-,leucine_rich_repeat_containing_38,POP1->POP1_homolog,_ribonuclease_P/MRP_subunit,chr8:99129525-99172062:+	SCLC21H_LUNG	0.09	0.8	0.0454	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	LZTS1--XKR6	2	2	LZTS1	1224	chr8:20161251:-	XKR6	19847	chr8:10782340:-	ONLY_REF_SPLICE	YES	13	2	0.24	0.67	0.0227	0.0227	LZTS1->chr8:20103676-20161474:-,leucine_zipper,_putative_tumor_suppressor_1,XKR6->XK_related_6,chr8:10753555-11058875:-	SCLC21H_LUNG	0.24	0.67	0.0454	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	NRIP1--AF127936.7	1	6	NRIP1	2336	chr21:16415816:-	AF127936.7	19658	chr21:16210144:-	ONLY_REF_SPLICE	YES	4	1	0.64	0.88	0.0114	0.0681	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCLC21H_LUNG	0.64	0.88	0.0795	FALSE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	RP11-108K3.1--GLDN	2	2	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0.0227	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SCLC21H_LUNG	1	1	0.0454	FALSE	0	19	0	46	0	FALSE	ACH-000659
SCLC21H_LUNG	RP11-108K3.1--GLDN	2	2	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0.0227	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SCLC21H_LUNG	1	1	0.0454	FALSE	0	14	0	30	0	FALSE	ACH-000659
SCLC21H_LUNG	CHD2--CCNL2	2	1	CHD2	6529	chr15:93444529:+	CCNL2	65894	chr1:1326245:-	ONLY_REF_SPLICE	YES	40	244	0.07	0.01	0.0227	0.0114	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,CCNL2->chr1:1321091-1334708:-,cyclin_L2	SCLC21H_LUNG	0.01	0.07	0.0341	FALSE	0	1	0	2	0	FALSE	ACH-000659
SCLC21H_LUNG	ENTPD4--RP11-400K9.4	2	1	ENTPD4	12534	chr8:23291830:-	RP11-400K9.4	25853	chr8:54429514:-	ONLY_REF_SPLICE	YES	55	0	0.05	1	0.0227	0.0114	ENTPD4->chr8:23243296-23315208:-,ectonucleoside_triphosphate_diphosphohydrolase_4,RP11-400K9.4->chr8:54427731-54436491:-	SCLC21H_LUNG	0.05	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	FUBP1--TP53BP1	2	1	FUBP1	14090	chr1:78414840:-	TP53BP1	32733	chr15:43762264:-	ONLY_REF_SPLICE	YES	235	53	0.01	0.05	0.0227	0.0114	FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	SCLC21H_LUNG	0.01	0.05	0.0341	FALSE	0	0	0	2	0	FALSE	ACH-000659
SCLC21H_LUNG	KANSL1--LRRC37A	1	5	KANSL1	7536	chr17:44248221:-	LRRC37A	37753	chr17:44377160:+	ONLY_REF_SPLICE	YES	61	3	0.09	0.67	0.0114	0.0568	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	SCLC21H_LUNG	0.09	0.67	0.0682	TRUE	5	10	0	8	0	FALSE	ACH-000659
SCLC21H_LUNG	RMDN1--RP11-152P17.2	2	1	RMDN1	1116	chr8:87526471:-	RP11-152P17.2	27509	chr8:106810670:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0.0114	RMDN1->chr8:87480486-87526586:-,regulator_of_microtubule_dynamics_1,RP11-152P17.2->chr8:106792474-107072752:-	SCLC21H_LUNG	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	RP1-34H18.1--NAV3	2	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0.0114	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SCLC21H_LUNG	1	1	0.0341	TRUE	254	575	65	124	0	FALSE	ACH-000659
SCLC21H_LUNG	RP11-467K18.2--FAR1	2	1	RP11-467K18.2	1382	chr11:9026090:+	FAR1	22818	chr11:13749103:+	ONLY_REF_SPLICE	YES	0	84	1	0.03	0.0227	0.0114	RP11-467K18.2->chr11:9025709-9086701:+,FAR1->chr11:13690217-13753893:+,fatty_acyl-CoA_reductase_1	SCLC21H_LUNG	0.03	1	0.0341	TRUE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	SRP9--ENAH	2	1	SRP9	1184	chr1:225965714:+	ENAH	11359	chr1:225755116:-	ONLY_REF_SPLICE	YES	958	147	0	0.02	0.0227	0.0114	SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa,ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila)	SCLC21H_LUNG	0	0.02	0.0341	FALSE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	TNFRSF18--NIPAL2	2	1	TNFRSF18	1307	chr1:1141765:-	NIPAL2	8576	chr8:99266315:-	ONLY_REF_SPLICE	YES	574	2	0.01	0.6	0.0227	0.0114	TNFRSF18->chr1:1138888-1142071:-,tumor_necrosis_factor_receptor_superfamily_member_18,NIPAL2->NIPA_like_domain_containing_2,chr8:99202061-99306621:-	SCLC21H_LUNG	0.01	0.6	0.0341	FALSE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	TPST1--GS1-124K5.4	2	1	TPST1	5907	chr7:65751696:+	GS1-124K5.4	15884	chr7:65960242:+	ONLY_REF_SPLICE	YES	11	4	0.21	0.43	0.0227	0.0114	NEIGHBORS[73163],TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,GS1-124K5.4->chr7:65958693-65960461:+	SCLC21H_LUNG	0.21	0.43	0.0341	FALSE	17	126	3	8	0	FALSE	ACH-000659
SCLC21H_LUNG	AC010642.1--GNAS	2	0	AC010642.1	7746	chr19:58817582:+	GNAS	29330	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	AC010642.1->chr19:58790332-58826563:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	CAPN15--NOC4L	2	0	CAPN15	2366	chr16:583998:+	NOC4L	24151	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},CAPN15->calpain_15,chr16:577717-604636:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	SCLC21H_LUNG	1	1	0.0227	TRUE	0	6	0	4	3	TRUE	ACH-000659
SCLC21H_LUNG	CHD2--GIGYF2	2	0	CHD2	6529	chr15:93444529:+	GIGYF2	85137	chr2:233651860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	EMC2--EIF3E	2	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	12	0	TRUE	ACH-000659
SCLC21H_LUNG	HECTD1--SAFB2	2	0	HECTD1	3008	chr14:31675003:-	SAFB2	63030	chr19:5592898:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,SAFB2->chr19:5587010-5624057:-,scaffold_attachment_factor_B2	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	KANSL1--LRRC37A	1	4	KANSL1	8599	chr17:44230270:-	LRRC37A	41698	chr17:44399688:+	ONLY_REF_SPLICE	YES	69	16	0.07	0.24	0.0114	0.0454	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	SCLC21H_LUNG	0.07	0.24	0.0568	TRUE	2	2	0	6	0	FALSE	ACH-000659
SCLC21H_LUNG	LINC01036--LINC01037	2	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SCLC21H_LUNG	1	1	0.0227	FALSE	0	26	0	50	0	FALSE	ACH-000659
SCLC21H_LUNG	MIPEPP3--TP53BP1	2	0	MIPEPP3	2501	chr13:21875757:+	TP53BP1	18458	chr15:43762264:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	OAZ1--ZBTB7A	2	0	OAZ1	1259	chr19:2269743:+	ZBTB7A	10520	chr19:4055245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=6;pct=0.07%;dist=Whole_Blood=4,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,ZBTB7A->chr19:4044362-4066943:-,zinc_finger_and_BTB_domain_containing_7A	SCLC21H_LUNG	1	1	0.0227	TRUE	4	3	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	PDE7A--GS1-24F4.2	2	0	PDE7A	7679	chr8:66691955:-	GS1-24F4.2	31313	chr8:6742644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	PDE7A->chr8:66629745-66754557:-,phosphodiesterase_7A,GS1-24F4.2->chr8:6693076-6742798:+	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SFRP1--UTP23	2	0	SFRP1	4229	chr8:41160980:-	UTP23	21034	chr8:117861127:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	SFRP1->chr8:41119481-41167016:-,secreted_frizzled-related_protein_1,UTP23->UTP23,_small_subunit_processome_component,chr8:117778742-117861702:+	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SRPK1--RALGAPA2	2	0	SRPK1	8769	chr6:35854501:-	RALGAPA2	68159	chr20:20392792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-,RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	STX18-AS1--MSX1	2	0	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	SCLC21H_LUNG	1	1	0.0227	TRUE	37	101	7	40	0	FALSE	ACH-000659
SCLC21H_LUNG	TMEM185A--MTMR1	2	0	TMEM185A	7111	chrX:148685653:-	MTMR1	25018	chrX:149898581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	TMEM185A->chrX:148678216-148713568:-,transmembrane_protein_185A,MTMR1->chrX:149861435-149933576:+,myotubularin_related_protein_1	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	TUB--SIX3-AS1	2	0	TUB	12982	chr11:8122544:+	SIX3-AS1	22138	chr2:45167972:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	TUB->chr11:8040791-8127659:+,tubby_bipartite_transcription_factor,SIX3-AS1->SIX3_antisense_RNA_1,chr2:45167293-45169012:-	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	UBR5--HP1BP3	2	0	UBR5	41208	chr8:103283362:-	HP1BP3	64135	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	ZFAT--MICU3	2	0	ZFAT	1205	chr8:135725088:-	MICU3	34137	chr8:16921593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing,MICU3->chr8:16884747-16980153:+,mitochondrial_calcium_uptake_family_member_3	SCLC21H_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	NOC4L--FBRSL1	1	3	NOC4L	2218	chr12:132630210:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	53	37	0.07	0.1	0.0114	0.0341	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	SCLC21H_LUNG	0.07	0.1	0.0455	TRUE	0	1	0	10	0	FALSE	ACH-000659
SCLC21H_LUNG	SCNN1D--ZFAT	1	3	SCNN1D	2884	chr1:1217699:+	ZFAT	30057	chr8:135602598:-	ONLY_REF_SPLICE	YES	1	12	0.8	0.25	0.0114	0.0341	SCNN1D->chr1:1215816-1227409:+,sodium_channel_epithelial_1_delta_subunit,ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing	SCLC21H_LUNG	0.25	0.8	0.0455	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	CLYBL--ZIC5	1	2	CLYBL	2280	chr13:100425264:+	ZIC5	23610	chr13:100618073:-	ONLY_REF_SPLICE	YES	31	176	0.09	0.02	0.0114	0.0227	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Frontal_Cortex_(BA9)=1},LOCAL_INVERSION:+:-:[65831],CLYBL->chr13:100258919-100549387:+,citrate_lyase_beta_like,ZIC5->Zic_family_member_5,chr13:100615218-100624163:-	SCLC21H_LUNG	0.02	0.09	0.0341	TRUE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	DNMT3A--ADCY3	1	2	DNMT3A	7982	chr2:25497810:-	ADCY3	32363	chr2:25065253:-	ONLY_REF_SPLICE	YES	7	66	0.3	0.04	0.0114	0.0227	{Klijn_CCL:Lung=1},DNMT3A->ArcherDX_panel,DNA_(cytosine-5-)-methyltransferase_3_alpha,FoundationOne_panel,Oncogene{Bushman},chr2:25455845-25565459:-,ADCY3->adenylate_cyclase_3,chr2:25042038-25142708:-	SCLC21H_LUNG	0.04	0.3	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	EFCAB11--RP11-944C7.1	1	2	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	5	0	0.38	1	0.0114	0.0227	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	SCLC21H_LUNG	0.38	1	0.0341	TRUE	31	91	1	18	0	FALSE	ACH-000659
SCLC21H_LUNG	NOC4L--FBRSL1	1	2	NOC4L	2218	chr12:132630210:+	FBRSL1	21444	chr12:133124589:+	ONLY_REF_SPLICE	NO	53	41	0.05	0.07	0.0114	0.0227	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	SCLC21H_LUNG	0.05	0.07	0.0341	TRUE	2	1	0	2	0	FALSE	ACH-000659
SCLC21H_LUNG	RP4-565E6.1--HYDIN	1	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	7	1	0.3	0.0114	0.0227	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SCLC21H_LUNG	0.3	1	0.0341	TRUE	84	87	4	41	0	FALSE	ACH-000659
SCLC21H_LUNG	SORBS3--CHMP7	1	2	SORBS3	11181	chr8:22422034:+	CHMP7	24809	chr8:23103769:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0114	0.0227	SORBS3->chr8:22402499-22433301:+,sorbin_and_SH3_domain_containing_3,CHMP7->charged_multivesicular_body_protein_7,chr8:23101150-23119512:+	SCLC21H_LUNG	0.6	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	SPIDR--GATA4	1	2	SPIDR	6576	chr8:48203726:+	GATA4	45557	chr8:11565365:+	ONLY_REF_SPLICE	YES	48	2	0.06	0.6	0.0114	0.0227	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+	SCLC21H_LUNG	0.06	0.6	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	AHCTF1--RALGAPA2	1	1	AHCTF1	19598	chr1:247051479:-	RALGAPA2	88827	chr20:20392792:-	ONLY_REF_SPLICE	YES	52	19	0.04	0.1	0.0114	0.0114	AHCTF1->AT-hook_containing_transcription_factor_1,chr1:247002400-247095280:-,RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-	SCLC21H_LUNG	0.04	0.1	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	ATR--U2SURP	1	1	ATR	3414	chr3:142284963:-	U2SURP	75627	chr3:142751626:+	ONLY_REF_SPLICE	YES	4	144	0.33	0.01	0.0114	0.0114	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Vagina=1},ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	SCLC21H_LUNG	0.01	0.33	0.0228	FALSE	0	10	0	10	7	FALSE	ACH-000659
SCLC21H_LUNG	DPYSL2--SNTG1	1	1	DPYSL2	1405	chr8:26372195:+	SNTG1	42040	chr8:51442737:+	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.0114	0.0114	DPYSL2->chr8:26371791-26515694:+,dihydropyrimidinase_like_2,SNTG1->chr8:50822349-51706678:+,syntrophin_gamma_1	SCLC21H_LUNG	0.11	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000659
SCLC21H_LUNG	EML6--RTN4	1	1	EML6	34631	chr2:55155888:+	RTN4	68282	chr2:55214834:-	ONLY_REF_SPLICE	YES	157	76	0.01	0.03	0.0114	0.0114	LOCAL_INVERSION:+:-:[168],EML6->chr2:54950636-55199157:+,echinoderm_microtubule_associated_protein_like_6,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	SCLC21H_LUNG	0.01	0.03	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	KDM4C--TMEM14B	1	1	KDM4C	6150	chr9:6814745:+	TMEM14B	49337	chr6:10756700:+	ONLY_REF_SPLICE	YES	17	178	0.11	0.01	0.0114	0.0114	KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,TMEM14B->chr6:10747992-10852986:+,transmembrane_protein_14B	SCLC21H_LUNG	0.01	0.11	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	LINC00299--AC007464.1	1	1	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0114	0.0114	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	SCLC21H_LUNG	1	1	0.0228	TRUE	67	49	0	25	0	FALSE	ACH-000659
SCLC21H_LUNG	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	0	1	1	0.67	0.0114	0.0114	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCLC21H_LUNG	0.67	1	0.0228	FALSE	25	145	6	90	0	FALSE	ACH-000659
SCLC21H_LUNG	RELL1--TBC1D1	1	1	RELL1	1177	chr4:37687822:-	TBC1D1	36334	chr4:38091553:+	ONLY_REF_SPLICE	YES	10	102	0.17	0.02	0.0114	0.0114	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Whole_Blood=2,Stomach=1,Lung=1},RELL1->RELT_like_1,chr4:37592422-37687998:-,TBC1D1->TBC1_domain_family_member_1,chr4:37892708-38140796:+	SCLC21H_LUNG	0.02	0.17	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	RPL31--SKI	1	1	RPL31	5008	chr2:101622533:+	SKI	17791	chr1:2234417:+	ONLY_REF_SPLICE	YES	321	65	0.01	0.03	0.0114	0.0114	RPL31->chr2:101618177-101640494:+,ribosomal_protein_L31,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	SCLC21H_LUNG	0.01	0.03	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	SPIDR--GATA4	1	1	SPIDR	7740	chr8:48206619:+	GATA4	47630	chr8:11606425:+	ONLY_REF_SPLICE	YES	84	0	0.02	1	0.0114	0.0114	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+	SCLC21H_LUNG	0.02	1	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	TMTC4--FAM208A	1	1	TMTC4	16517	chr13:101277789:-	FAM208A	27219	chr3:56707753:-	ONLY_REF_SPLICE	YES	63	10	0.03	0.17	0.0114	0.0114	TMTC4->chr13:101256181-101327347:-,transmembrane_and_tetratricopeptide_repeat_containing_4,FAM208A->chr3:56654161-56717265:-,family_with_sequence_similarity_208_member_A	SCLC21H_LUNG	0.03	0.17	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	TOP2A--TAF11	1	1	TOP2A	20364	chr17:38547758:-	TAF11	29876	chr6:34846497:-	ONLY_REF_SPLICE	NO	423	101	0	0.02	0.0114	0.0114	TOP2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38544768-38574202:-,topoisomerase_(DNA)_II_alpha,TAF11->TATA-box_binding_protein_associated_factor_11,chr6:34845555-34855866:-	SCLC21H_LUNG	0	0.02	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000659
SCLC21H_LUNG	ZNF700--KNTC1	1	1	ZNF700	1206	chr19:12036088:+	KNTC1	47375	chr12:123078823:+	ONLY_REF_SPLICE	NO	29	57	0.06	0.03	0.0114	0.0114	ZNF700->chr19:12035883-12061588:+,zinc_finger_protein_700,KNTC1->chr12:123011793-123110943:+,kinetochore_associated_1	SCLC21H_LUNG	0.03	0.06	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000659
NUGC2_STOMACH	FLNB--SLMAP	184	51	FLNB	1457	chr3:57994583:+	SLMAP	71262	chr3:57875768:+	ONLY_REF_SPLICE	YES	290	27	0.45	0.9	1.797	0.4981	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	NUGC2_STOMACH	0.45	0.9	2.2951	TRUE	0	2	0	1	1	TRUE	ACH-000761
NUGC2_STOMACH	AC093642.5--AC131097.3	133	21	AC093642.5	2310	chr2:243037178:+	AC131097.3	21655	chr2:243020611:+	ONLY_REF_SPLICE	YES	13	0	0.92	1	1.2989	0.2051	LOCAL_REARRANGEMENT:+:[9911],AC093642.5->chr2:243030784-243102304:+,AC131097.3->chr2:242823514-243020873:+	NUGC2_STOMACH	0.92	1	1.504	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	BMPR2--WDR12	93	40	BMPR2	3957	chr2:203332412:+	WDR12	37534	chr2:203760942:-	ONLY_REF_SPLICE	YES	35	50	0.79	0.73	0.9083	0.3907	{Klijn_CCL:Stomach=1},BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,WDR12->WD_repeat_domain_12,chr2:203739505-203879521:-	NUGC2_STOMACH	0.73	0.79	1.299	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	LSM4--ELL	95	17	LSM4	3592	chr19:18423414:-	ELL	13605	chr19:18583692:-	ONLY_REF_SPLICE	YES	555	52	0.17	0.68	0.9278	0.166	{Klijn_CCL:Stomach=1},LSM4->LSM4_homolog,_U6_small_nuclear_RNA_and_mRNA_degradation_associated,chr19:18417040-18434084:-,ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II	NUGC2_STOMACH	0.17	0.68	1.0938	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	HIC1--RP11-382A18.2	62	30	HIC1	2085	chr17:1958532:+	RP11-382A18.2	9542	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	69	0	0.57	1	0.6055	0.293	HIC1->Oncogene{Bushman},chr17:1957448-1962981:+,hypermethylated_in_cancer_1,RP11-382A18.2->chr8:128351519-128404876:+	NUGC2_STOMACH	0.57	1	0.8985	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	TIMM23B--LINC00843	62	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6055	0.1367	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NUGC2_STOMACH	1	1	0.7422	TRUE	508	994	45	981	0	FALSE	ACH-000761
NUGC2_STOMACH	MT-TA--MT-TC	46	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4492	0.0195	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUGC2_STOMACH	1	1	0.4687	FALSE	462	80	0	856	0	FALSE	ACH-000761
NUGC2_STOMACH	HIC1--DPH1	36	29	HIC1	2085	chr17:1958532:+	DPH1	19144	chr17:1945899:+	ONLY_REF_SPLICE	YES	69	251	0.49	0.21	0.3516	0.2832	LOCAL_REARRANGEMENT:+:[10724],HIC1->Oncogene{Bushman},chr17:1957448-1962981:+,hypermethylated_in_cancer_1,DPH1->Oncogene{Bushman},chr17:1933404-1946724:+,diphthamide_biosynthesis_1	NUGC2_STOMACH	0.21	0.49	0.6348	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	TIMM23--RP11-464F9.1	36	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	228	1	0.15	0.97	0.3516	0.0293	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NUGC2_STOMACH	0.15	0.97	0.3809	TRUE	519	3926	326	965	0	FALSE	ACH-000761
NUGC2_STOMACH	BMPR2--WDR12	20	51	BMPR2	3957	chr2:203332412:+	WDR12	36418	chr2:203762138:-	ONLY_REF_SPLICE	YES	35	46	0.67	0.61	0.1953	0.4981	{Klijn_CCL:Stomach=1},BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,WDR12->WD_repeat_domain_12,chr2:203739505-203879521:-	NUGC2_STOMACH	0.61	0.67	0.6934	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	RP11-96H19.1--RP11-446N19.1	24	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	0	0.9	1	0.2344	0.1074	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NUGC2_STOMACH	0.9	1	0.3418	FALSE	515	4851	409	746	0	FALSE	ACH-000761
NUGC2_STOMACH	LIN9--LINC00266-1	25	3	LIN9	7639	chr1:226474034:-	LINC00266-1	21664	chr20:62926244:+	ONLY_REF_SPLICE	YES	20	0	0.58	1	0.2442	0.0293	LIN9->chr1:226418850-226497570:-,lin-9_DREAM_MuvB_core_complex_component,LINC00266-1->chr20:62921738-62944485:+,long_intergenic_non-protein_coding_RNA_266-1	NUGC2_STOMACH	0.58	1	0.2735	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	MT-ND6--MT-TE	25	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2442	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC2_STOMACH	1	1	0.2442	FALSE	499	1288	110	792	0	FALSE	ACH-000761
NUGC2_STOMACH	FAM69B--AC023669.1	24	0	FAM69B	2294	chr9:139612163:+	AC023669.1	10511	chr7:46303498:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2344	0	FAM69B->chr9:139607022-139618502:+,family_with_sequence_similarity_69_member_B,AC023669.1->chr7:46300662-46334067:+	NUGC2_STOMACH	1	1	0.2344	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	RP11-123O10.4--GRIP1	22	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2149	0.0488	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NUGC2_STOMACH	1	1	0.2637	FALSE	416	2512	207	587	0	FALSE	ACH-000761
NUGC2_STOMACH	PTP4A3--PHACTR3	23	0	PTP4A3	1092	chr8:142402184:+	PHACTR3	17902	chr20:58318162:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2246	0	PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3,PHACTR3->chr20:58152564-58422766:+,phosphatase_and_actin_regulator_3	NUGC2_STOMACH	1	1	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	RP11-680G10.1--GSE1	21	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	43	1	0.37	0.2051	0.0391	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NUGC2_STOMACH	0.37	1	0.2442	TRUE	465	1949	224	605	0	FALSE	ACH-000761
NUGC2_STOMACH	MT-ND4--MT-ND4L	3	68	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	1	1	0.99	0.99	0.0293	0.6641	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC2_STOMACH	0.99	0.99	0.6934	FALSE	344	826	44	306	0	FALSE	ACH-000761
NUGC2_STOMACH	FLNB--SLMAP	6	52	FLNB	1457	chr3:57994583:+	SLMAP	70149	chr3:57857363:+	ONLY_REF_SPLICE	YES	290	27	0.17	0.68	0.0586	0.5078	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	NUGC2_STOMACH	0.17	0.68	0.5664	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	BRPF3--MAPK14	16	10	BRPF3	13382	chr6:36190042:+	MAPK14	26640	chr6:36040650:+	ONLY_REF_SPLICE	YES	48	61	0.35	0.3	0.1563	0.0977	LOCAL_REARRANGEMENT:+:[85508],BRPF3->bromodomain_and_PHD_finger_containing_3,chr6:36164521-36200567:+,MAPK14->Oncogene{Bushman},chr6:35995488-36079013:+,mitogen-activated_protein_kinase_14	NUGC2_STOMACH	0.3	0.35	0.254	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	FLNB--SLMAP	9	33	FLNB	1457	chr3:57994583:+	SLMAP	73700	chr3:57882238:+	ONLY_REF_SPLICE	YES	290	23	0.13	0.65	0.0879	0.3223	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	NUGC2_STOMACH	0.13	0.65	0.4102	TRUE	0	2	0	1	1	TRUE	ACH-000761
NUGC2_STOMACH	HSPBP1--GRK5	17	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.166	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NUGC2_STOMACH	1	1	0.166	TRUE	1	39	0	134	39	FALSE	ACH-000761
NUGC2_STOMACH	LUC7L2--UBN2	15	7	LUC7L2	7910	chr7:139092096:+	UBN2	19336	chr7:138936702:+	ONLY_REF_SPLICE	YES	95	2	0.19	0.92	0.1465	0.0684	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[33124],LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+,UBN2->chr7:138915102-138992982:+,ubinuclein_2	NUGC2_STOMACH	0.19	0.92	0.2149	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	MT-ND4--MT-ND4L	3	52	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	5	1	0.92	0.98	0.0293	0.5078	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC2_STOMACH	0.92	0.98	0.5371	FALSE	344	826	44	306	0	FALSE	ACH-000761
NUGC2_STOMACH	BRPF3--MAPK14	13	8	BRPF3	12284	chr6:36185787:+	MAPK14	26640	chr6:36040650:+	ONLY_REF_SPLICE	YES	30	61	0.41	0.26	0.127	0.0781	LOCAL_REARRANGEMENT:+:[85508],BRPF3->bromodomain_and_PHD_finger_containing_3,chr6:36164521-36200567:+,MAPK14->Oncogene{Bushman},chr6:35995488-36079013:+,mitogen-activated_protein_kinase_14	NUGC2_STOMACH	0.26	0.41	0.2051	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	MT-ND6--MT-TE	15	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1465	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC2_STOMACH	1	1	0.1465	FALSE	499	1288	110	792	0	FALSE	ACH-000761
NUGC2_STOMACH	FLNB--SLMAP	1	50	FLNB	1457	chr3:57994583:+	SLMAP	71267	chr3:57875773:+	ONLY_REF_SPLICE	NO	290	27	0.15	0.65	0.0098	0.4883	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	NUGC2_STOMACH	0.15	0.65	0.4981	TRUE	0	2	0	1	1	TRUE	ACH-000761
NUGC2_STOMACH	MT-TA--MT-TC	11	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1074	0.0293	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUGC2_STOMACH	1	1	0.1367	FALSE	462	80	0	856	0	FALSE	ACH-000761
NUGC2_STOMACH	RP11-96H19.1--RP11-446N19.1	7	13	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.0684	0.127	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NUGC2_STOMACH	0.95	1	0.1954	FALSE	467	2173	244	435	0	FALSE	ACH-000761
NUGC2_STOMACH	RP11-96H19.1--RP11-446N19.1	6	15	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.84	1	0.0586	0.1465	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NUGC2_STOMACH	0.84	1	0.2051	FALSE	407	2205	196	549	0	FALSE	ACH-000761
NUGC2_STOMACH	MT-ND6--MT-TE	9	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0879	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC2_STOMACH	1	1	0.0879	FALSE	499	1288	110	792	0	FALSE	ACH-000761
NUGC2_STOMACH	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0879	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUGC2_STOMACH	1	1	0.0879	FALSE	462	80	0	856	0	FALSE	ACH-000761
NUGC2_STOMACH	NRIP1--AF127936.7	8	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0781	0.0195	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NUGC2_STOMACH	0.83	1	0.0976	FALSE	292	1546	117	613	0	FALSE	ACH-000761
NUGC2_STOMACH	PHF20--RBM39	8	1	PHF20	4583	chr20:34389527:+	RBM39	42942	chr20:34320057:-	ONLY_REF_SPLICE	YES	83	216	0.1	0.04	0.0781	0.0098	GTEx_v2:{count=2;pct=0.02%;dist=Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1},{Klijn_CCL:Stomach=1},LOCAL_INVERSION:+:-:[29662],PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	NUGC2_STOMACH	0.04	0.1	0.0879	TRUE	0	0	0	2	0	FALSE	ACH-000761
NUGC2_STOMACH	MT-ND4--MT-ND4L	4	15	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6	0	0.76	1	0.0391	0.1465	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC2_STOMACH	0.76	1	0.1856	FALSE	344	826	44	306	0	FALSE	ACH-000761
NUGC2_STOMACH	NRIP1--AF127936.7	6	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.53	1	0.0586	0.0391	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NUGC2_STOMACH	0.53	1	0.0977	FALSE	125	705	46	456	0	FALSE	ACH-000761
NUGC2_STOMACH	RP11-680G10.1--GSE1	6	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.5	0.0586	0.0391	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NUGC2_STOMACH	0.5	1	0.0977	TRUE	458	1351	185	561	0	FALSE	ACH-000761
NUGC2_STOMACH	MT-TA--MT-TC	6	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0586	0.0293	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUGC2_STOMACH	1	1	0.0879	FALSE	462	80	0	856	0	FALSE	ACH-000761
NUGC2_STOMACH	RP11-120D5.1--MID1	6	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	40	0.78	0.15	0.0586	0.0098	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NUGC2_STOMACH	0.15	0.78	0.0684	FALSE	16	356	14	466	0	FALSE	ACH-000761
NUGC2_STOMACH	EEF2--RPS28	6	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0586	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NUGC2_STOMACH	1	1	0.0586	TRUE	0	0	0	100	0	FALSE	ACH-000761
NUGC2_STOMACH	FAM53A--LETM1	6	0	FAM53A	1070	chr4:1685960:-	LETM1	26026	chr4:1827410:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0586	0	FAM53A->chr4:1619642-1686029:-,family_with_sequence_similarity_53_member_A,LETM1->chr4:1813206-1857974:-,leucine_zipper_and_EF-hand_containing_transmembrane_protein_1	NUGC2_STOMACH	1	1	0.0586	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	BMPR2--WDR12	3	6	BMPR2	3957	chr2:203332412:+	WDR12	39941	chr2:203757425:-	ONLY_REF_SPLICE	YES	35	61	0.2	0.13	0.0293	0.0586	{Klijn_CCL:Stomach=1},BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,WDR12->WD_repeat_domain_12,chr2:203739505-203879521:-	NUGC2_STOMACH	0.13	0.2	0.0879	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	RP11-476K15.1--CTD-2015H3.2	4	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0391	0.0098	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NUGC2_STOMACH	0.71	1	0.0489	FALSE	0	46	0	73	0	FALSE	ACH-000761
NUGC2_STOMACH	DNAJC25--UGCG	4	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0391	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	NUGC2_STOMACH	1	1	0.0391	TRUE	50	73	10	50	0	FALSE	ACH-000761
NUGC2_STOMACH	HSPBP1--GRK5	4	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NUGC2_STOMACH	1	1	0.0391	TRUE	1	39	0	134	39	FALSE	ACH-000761
NUGC2_STOMACH	HSPBP1--GRK5	4	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NUGC2_STOMACH	1	1	0.0391	TRUE	1	39	0	134	39	FALSE	ACH-000761
NUGC2_STOMACH	HSPBP1--GRK5	4	0	HSPBP1	1855	chr19:55790895:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NUGC2_STOMACH	1	1	0.0391	TRUE	1	39	0	134	39	FALSE	ACH-000761
NUGC2_STOMACH	IGFBP7--KRT17	4	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	NUGC2_STOMACH	1	1	0.0391	TRUE	0	0	0	9	0	TRUE	ACH-000761
NUGC2_STOMACH	ITGB8--GPNMB	4	0	ITGB8	17741	chr7:20441749:+	GPNMB	37662	chr7:23296511:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0391	0	ITGB8->chr7:20370325-20455377:+,integrin_subunit_beta_8,GPNMB->Oncogene{Bushman},chr7:23275586-23314727:+,glycoprotein_nmb	NUGC2_STOMACH	1	1	0.0391	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	MT-ND6--MT-TE	4	0	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC2_STOMACH	1	1	0.0391	FALSE	499	1288	110	792	0	FALSE	ACH-000761
NUGC2_STOMACH	MT-ND6--MT-TE	4	0	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC2_STOMACH	1	1	0.0391	FALSE	499	1288	110	792	0	FALSE	ACH-000761
NUGC2_STOMACH	RP11-476K15.1--CTD-2015H3.2	4	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0391	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NUGC2_STOMACH	1	1	0.0391	FALSE	0	46	0	73	0	FALSE	ACH-000761
NUGC2_STOMACH	RP11-141M1.3--STARD13	3	3	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	27	1	0.18	0.0293	0.0293	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NUGC2_STOMACH	0.18	1	0.0586	FALSE	141	264	50	91	0	FALSE	ACH-000761
NUGC2_STOMACH	TMEM65--HRH3	3	2	TMEM65	1839	chr8:125384095:-	HRH3	14776	chr20:60793713:-	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0293	0.0195	TMEM65->chr8:125324231-125384933:-,transmembrane_protein_65,HRH3->chr20:60790026-60795323:-,histamine_receptor_H3	NUGC2_STOMACH	0.56	1	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	FTH1--ACTB	3	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	4616	2	0	0.67	0.0293	0.0098	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NUGC2_STOMACH	0	0.67	0.0391	FALSE	1	0	0	97	0	FALSE	ACH-000761
NUGC2_STOMACH	MT-TA--MT-TC	3	1	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0293	0.0098	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUGC2_STOMACH	1	1	0.0391	FALSE	462	80	0	856	0	FALSE	ACH-000761
NUGC2_STOMACH	PARN--NPIPA5	3	1	PARN	4099	chr16:14722029:-	NPIPA5	40515	chr16:15460617:-	ONLY_REF_SPLICE	YES	110	57	0.04	0.07	0.0293	0.0098	PARN->chr16:14529558-14726585:-,poly(A)-specific_ribonuclease,NPIPA5->chr16:15457516-15474904:-,nuclear_pore_complex_interacting_protein_family_member_A5	NUGC2_STOMACH	0.04	0.07	0.0391	TRUE	0	0	0	1	0	FALSE	ACH-000761
NUGC2_STOMACH	RFXAP--ITGAX	3	1	RFXAP	1734	chr13:37394094:+	ITGAX	21173	chr16:31388120:+	ONLY_REF_SPLICE	YES	26	3	0.13	0.57	0.0293	0.0098	RFXAP->chr13:37393361-37403241:+,regulatory_factor_X_associated_protein,ITGAX->Oncogene{Bushman},chr16:31366455-31394318:+,integrin_subunit_alpha_X	NUGC2_STOMACH	0.13	0.57	0.0391	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	CASC9--RP11-300E4.2	3	0	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0293	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NUGC2_STOMACH	1	1	0.0293	TRUE	0	23	0	19	23	TRUE	ACH-000761
NUGC2_STOMACH	DCAF10--ZNF484	3	0	DCAF10	4216	chr9:37842283:+	ZNF484	20394	chr9:95637341:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	DCAF10->DDB1_and_CUL4_associated_factor_10,chr9:37800499-37867663:+,ZNF484->chr9:95607874-95640304:-,zinc_finger_protein_484	NUGC2_STOMACH	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	FLNB--SLMAP	2	4	FLNB	1457	chr3:57994583:+	SLMAP	80335	chr3:57893611:+	ONLY_REF_SPLICE	YES	290	41	0.02	0.13	0.0195	0.0391	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	NUGC2_STOMACH	0.02	0.13	0.0586	TRUE	0	2	0	1	1	FALSE	ACH-000761
NUGC2_STOMACH	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0293	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC2_STOMACH	1	1	0.0293	FALSE	344	821	44	306	0	FALSE	ACH-000761
NUGC2_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0293	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC2_STOMACH	1	1	0.0293	FALSE	499	1288	110	792	0	FALSE	ACH-000761
NUGC2_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0293	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC2_STOMACH	1	1	0.0293	FALSE	499	1288	110	792	0	FALSE	ACH-000761
NUGC2_STOMACH	PRPF40A--DNAJC15	2	1	PRPF40A	2904	chr2:153572509:-	DNAJC15	33166	chr13:43639822:+	ONLY_REF_SPLICE	YES	101	179	0.03	0.02	0.0195	0.0098	PRPF40A->chr2:153508107-153574511:-,pre-mRNA_processing_factor_40_homolog_A,DNAJC15->DnaJ_heat_shock_protein_family_(Hsp40)_member_C15,chr13:43597339-43683045:+	NUGC2_STOMACH	0.02	0.03	0.0293	TRUE	0	0	0	1	0	FALSE	ACH-000761
NUGC2_STOMACH	AC002066.1--TES	2	0	AC002066.1	2203	chr7:116122867:-	TES	19794	chr7:115897348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	NEIGHBORS_OVERLAP:-:+:[20523],AC002066.1->chr7:115878314-116139519:-,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	NUGC2_STOMACH	1	1	0.0195	FALSE	0	0	0	2	0	FALSE	ACH-000761
NUGC2_STOMACH	RP11-141M1.3--STARD13	1	4	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	27	1	0.16	0.0098	0.0391	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NUGC2_STOMACH	0.16	1	0.0489	FALSE	49	120	16	70	0	FALSE	ACH-000761
NUGC2_STOMACH	RP11-392P7.6--GFOD2	2	0	RP11-392P7.6	1078	chr12:13080737:+	GFOD2	25132	chr16:67709956:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	RP11-392P7.6->chr12:13080660-13137579:+,GFOD2->chr16:67708434-67753324:-,glucose-fructose_oxidoreductase_domain_containing_2	NUGC2_STOMACH	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	SFMBT1--EXOSC1	2	0	SFMBT1	10546	chr3:52968829:-	EXOSC1	37888	chr10:99197507:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	SFMBT1->Scm-like_with_four_mbt_domains_1,chr3:52937588-53080766:-,EXOSC1->chr10:99195899-99205774:-,exosome_component_1	NUGC2_STOMACH	1	1	0.0195	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	UBL3--SLC7A1	2	0	UBL3	2173	chr13:30423649:-	SLC7A1	14036	chr13:30127997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	NUGC2_STOMACH	1	1	0.0195	TRUE	1	5	0	8	1	TRUE	ACH-000761
NUGC2_STOMACH	VAPB--APCDD1L-AS1	2	0	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	31664	chr20:57193796:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	NUGC2_STOMACH	1	1	0.0195	FALSE	2	12	0	8	0	FALSE	ACH-000761
NUGC2_STOMACH	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0195	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NUGC2_STOMACH	1	1	0.0195	FALSE	272	151	14	158	0	FALSE	ACH-000761
NUGC2_STOMACH	TMBIM1--USP37	1	3	TMBIM1	7283	chr2:219146663:-	USP37	33085	chr2:219362880:-	ONLY_REF_SPLICE	YES	192	6	0.02	0.4	0.0098	0.0293	TMBIM1->chr2:219138915-219157309:-,transmembrane_BAX_inhibitor_motif_containing_1,USP37->chr2:219314974-219433084:-,ubiquitin_specific_peptidase_37	NUGC2_STOMACH	0.02	0.4	0.0391	TRUE	0	0	0	1	0	FALSE	ACH-000761
NUGC2_STOMACH	RP11-1L12.3--SLC5A12	1	2	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0098	0.0195	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	NUGC2_STOMACH	0.6	1	0.0293	TRUE	3	101	0	60	0	FALSE	ACH-000761
NUGC2_STOMACH	DPH6-AS1--RP11-684B21.1	1	1	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	7	0	0.22	1	0.0098	0.0098	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	NUGC2_STOMACH	0.22	1	0.0196	TRUE	17	119	17	33	0	FALSE	ACH-000761
NUGC2_STOMACH	FHOD3--MOCOS	1	1	FHOD3	8978	chr18:34174861:+	MOCOS	41541	chr18:33775220:+	ONLY_REF_SPLICE	YES	104	35	0.02	0.05	0.0098	0.0098	LOCAL_REARRANGEMENT:+:[25557],FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,MOCOS->chr18:33767482-33852120:+,molybdenum_cofactor_sulfurase	NUGC2_STOMACH	0.02	0.05	0.0196	TRUE	0	0	0	1	0	FALSE	ACH-000761
NUGC2_STOMACH	NBPF18P--AL450992.2	1	1	NBPF18P	4409	chr1:151986607:+	AL450992.2	18191	chr1:151816521:+	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0098	0.0098	NBPF18P->chr1:151967007-152015250:+,neuroblastoma_breakpoint_family_member_18,_pseudogene,AL450992.2->chr1:151814353-151822861:+	NUGC2_STOMACH	0.5	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	NBPF18P--AL450992.2	1	1	NBPF18P	3300	chr1:151983458:+	AL450992.2	18191	chr1:151816521:+	ONLY_REF_SPLICE	YES	1	2	0.67	0.5	0.0098	0.0098	NBPF18P->chr1:151967007-152015250:+,neuroblastoma_breakpoint_family_member_18,_pseudogene,AL450992.2->chr1:151814353-151822861:+	NUGC2_STOMACH	0.5	0.67	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000761
NUGC2_STOMACH	NCOR2--UBC	1	1	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	177	35	0.01	0.05	0.0098	0.0098	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NUGC2_STOMACH	0.01	0.05	0.0196	FALSE	52	148	13	33	0	FALSE	ACH-000761
NUGC2_STOMACH	NME2--TMEM138	1	1	NME2	7432	chr17:49245704:+	TMEM138	18726	chr11:61135395:+	ONLY_REF_SPLICE	YES	1113	141	0	0.01	0.0098	0.0098	NME2->NME/NM23_nucleoside_diphosphate_kinase_2,chr17:49230951-49249105:+,TMEM138->chr11:61129473-61136981:+,transmembrane_protein_138	NUGC2_STOMACH	0	0.01	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000761
NUGC2_STOMACH	PARN--NPIPA5	1	1	PARN	4099	chr16:14722029:-	NPIPA5	41793	chr16:15459321:-	ONLY_REF_SPLICE	YES	110	56	0.02	0.03	0.0098	0.0098	PARN->chr16:14529558-14726585:-,poly(A)-specific_ribonuclease,NPIPA5->chr16:15457516-15474904:-,nuclear_pore_complex_interacting_protein_family_member_A5	NUGC2_STOMACH	0.02	0.03	0.0196	TRUE	0	0	0	1	0	FALSE	ACH-000761
NUGC2_STOMACH	PHF20--RBM39	1	1	PHF20	13894	chr20:34446303:+	RBM39	38196	chr20:34326939:-	ONLY_REF_SPLICE	NO	54	541	0.04	0	0.0098	0.0098	GTEx_v2:{count=2;pct=0.02%;dist=Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1},{Klijn_CCL:Stomach=1},LOCAL_INVERSION:+:-:[29662],PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	NUGC2_STOMACH	0	0.04	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000761
NUGC2_STOMACH	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0098	0.0098	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NUGC2_STOMACH	0.67	1	0.0196	FALSE	93	270	15	244	0	FALSE	ACH-000761
NUGC2_STOMACH	SF1--OSBPL3	1	1	SF1	3289	chr11:64543970:-	OSBPL3	32567	chr7:24874355:-	ONLY_REF_SPLICE	YES	229	64	0.01	0.03	0.0098	0.0098	SF1->chr11:64532078-64546258:-,splicing_factor_1,OSBPL3->Oncogene{Bushman},chr7:24836158-25021253:-,oxysterol_binding_protein_like_3	NUGC2_STOMACH	0.01	0.03	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000761
NUGC2_STOMACH	TAF4--NELFCD	1	1	TAF4	17661	chr20:60572606:-	NELFCD	30833	chr20:57562763:+	ONLY_REF_SPLICE	NO	158	459	0.01	0	0.0098	0.0098	TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,NELFCD->chr20:57556263-57570188:+,negative_elongation_factor_complex_member_C/D	NUGC2_STOMACH	0	0.01	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000761
NUGC2_STOMACH	VAPB--APCDD1L-AS1	1	1	VAPB	1396	chr20:56964573:+	APCDD1L-AS1	29152	chr20:57122868:+	ONLY_REF_SPLICE	YES	269	9	0.01	0.18	0.0098	0.0098	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	NUGC2_STOMACH	0.01	0.18	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000761
NUGC2_STOMACH	ZNF462--RAD23B	1	1	ZNF462	1259	chr9:109625636:+	RAD23B	31913	chr9:110062422:+	ONLY_REF_SPLICE	NO	7	153	0.22	0.01	0.0098	0.0098	ZNF462->chr9:109625378-109775915:+,zinc_finger_protein_462,RAD23B->Oncogene{Bushman},RAD23_homolog_B,_nucleotide_excision_repair_protein,chr9:110045418-110094475:+	NUGC2_STOMACH	0.01	0.22	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000761
TM31_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	151	38	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6958	0.4267	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	2.1225	TRUE	508	994	45	981	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	95	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	325	0	0.23	1	1.0669	0.0337	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TM31_CENTRAL_NERVOUS_SYSTEM	0.23	1	1.1006	TRUE	519	3926	326	965	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	90	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0107	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	1.0107	TRUE	402	216	10	229	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	WI2-1896O14.1--RP11-353N4.1	73	25	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.8198	0.2808	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	1.1006	TRUE	361	258	24	38	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	SORBS2--SLC9B1	59	16	SORBS2	44125	chr4:186535985:-	SLC9B1	58795	chr4:103912869:-	ONLY_REF_SPLICE	YES	153	0	0.33	1	0.6626	0.1797	SORBS2->Oncogene{Bushman},chr4:186506598-186877806:-,sorbin_and_SH3_domain_containing_2,SLC9B1->chr4:103806205-103940896:-,solute_carrier_family_9_member_B1	TM31_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.8423	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	IRF2--LINC01060	51	37	IRF2	1202	chr4:185395533:-	LINC01060	17568	chr4:189357858:+	ONLY_REF_SPLICE	YES	47	0	0.65	1	0.5727	0.4155	IRF2->ArcherDX_panel,FoundationOne_panel,chr4:185308867-185395734:-,interferon_regulatory_factor_2,LINC01060->chr4:189321890-189602205:+,long_intergenic_non-protein_coding_RNA_1060	TM31_CENTRAL_NERVOUS_SYSTEM	0.65	1	0.9882	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	32	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3594	0.0449	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.4043	FALSE	462	80	0	856	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	VMP1--CLCN3	33	0	VMP1	1557	chr17:57785109:+	CLCN3	25754	chr4:170557064:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3706	0	VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,CLCN3->chloride_voltage-gated_channel_3,chr4:170533784-170644824:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.3706	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	AHCTF1--RP11-80B9.1	27	6	AHCTF1	30251	chr1:247024201:-	RP11-80B9.1	46268	chr1:240931452:+	ONLY_REF_SPLICE	YES	35	0	0.49	1	0.3032	0.0674	AHCTF1->AT-hook_containing_transcription_factor_1,chr1:247002400-247095280:-,RP11-80B9.1->chr1:240928857-240931980:+	TM31_CENTRAL_NERVOUS_SYSTEM	0.49	1	0.3706	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	GPR173--FAM156B	23	8	GPR173	1394	chrX:53078666:+	FAM156B	14533	chrX:52928494:+	ONLY_REF_SPLICE	YES	17	13	0.65	0.7	0.2583	0.0898	GPR173->G_protein-coupled_receptor_173,chrX:53078273-53109797:+,FAM156B->chrX:52920336-52937587:+,family_with_sequence_similarity_156_member_B	TM31_CENTRAL_NERVOUS_SYSTEM	0.65	0.7	0.3481	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	19	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2134	0.0674	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.2808	TRUE	477	1352	189	275	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	SLC16A9--IPMK	12	2	SLC16A9	2674	chr10:61469237:-	IPMK	16358	chr10:59997575:-	ONLY_REF_SPLICE	YES	33	24	0.3	0.37	0.1348	0.0225	SLC16A9->chr10:61410523-61495760:-,solute_carrier_family_16_member_9,IPMK->chr10:59951278-60027694:-,inositol_polyphosphate_multikinase	TM31_CENTRAL_NERVOUS_SYSTEM	0.3	0.37	0.1573	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	EMILIN2--SOGA2	12	1	EMILIN2	1902	chr18:2847929:+	SOGA2	20638	chr18:8718422:+	ONLY_REF_SPLICE	YES	13	81	0.5	0.14	0.1348	0.0112	EMILIN2->chr18:2847028-2915991:+,elastin_microfibril_interfacer_2,SOGA2->chr18:8705659-8832776:+	TM31_CENTRAL_NERVOUS_SYSTEM	0.14	0.5	0.146	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	RP4-565E6.1--HYDIN	11	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1235	0.0449	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.1684	TRUE	456	1387	91	133	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	DNAJC25--UGCG	10	1	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	129	89	0.08	0.11	0.1123	0.0112	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	TM31_CENTRAL_NERVOUS_SYSTEM	0.08	0.11	0.1235	TRUE	50	73	10	50	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	8	4	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	32	1	0.27	0.0898	0.0449	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	TM31_CENTRAL_NERVOUS_SYSTEM	0.27	1	0.1347	FALSE	49	120	16	70	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	7	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	59	29	0.17	0.29	0.0786	0.0562	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TM31_CENTRAL_NERVOUS_SYSTEM	0.17	0.29	0.1348	TRUE	267	562	48	632	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	8	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0898	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0898	TRUE	347	1186	183	220	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	PSMB4--CD44	7	0	PSMB4	2312	chr1:151373321:+	CD44	31781	chr11:35252592:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0786	0	PSMB4->chr1:151372010-151374420:+,proteasome_subunit_beta_4,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0786	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	6	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	58	29	0.13	0.24	0.0674	0.0337	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TM31_CENTRAL_NERVOUS_SYSTEM	0.13	0.24	0.1011	TRUE	267	562	48	632	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	6	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	77	0.88	0.08	0.0674	0.0112	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	TM31_CENTRAL_NERVOUS_SYSTEM	0.08	0.88	0.0786	FALSE	16	356	14	466	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	6	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	32	1	0.18	0.0674	0.0112	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	TM31_CENTRAL_NERVOUS_SYSTEM	0.18	1	0.0786	FALSE	141	264	50	91	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	4	4	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0449	0.0449	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0898	TRUE	274	363	69	150	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	RPS16--ATP5B	5	0	RPS16	3268	chr19:39924321:-	ATP5B	7571	chr12:57038970:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	RPS16->chr19:39923847-39926588:-,ribosomal_protein_S16,ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	SORBS2--SLC9B1	1	16	SORBS2	44125	chr4:186535985:-	SLC9B1	57740	chr4:103936079:-	ONLY_REF_SPLICE	YES	153	0	0.1	1	0.0112	0.1797	SORBS2->Oncogene{Bushman},chr4:186506598-186877806:-,sorbin_and_SH3_domain_containing_2,SLC9B1->chr4:103806205-103940896:-,solute_carrier_family_9_member_B1	TM31_CENTRAL_NERVOUS_SYSTEM	0.1	1	0.1909	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	APCDD1--LAMA1	4	1	APCDD1	4128	chr18:10472058:+	LAMA1	46469	chr18:7002384:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0449	0.0112	APCDD1->adenomatosis_polyposis_coli_down-regulated_1,chr18:10454625-10489945:+,LAMA1->chr18:6941743-7117813:-,laminin_subunit_alpha_1	TM31_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.0561	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	GPR173--FAM156B	4	1	GPR173	1394	chrX:53078666:+	FAM156B	15607	chrX:52929594:+	ONLY_REF_SPLICE	YES	17	13	0.23	0.28	0.0449	0.0112	GPR173->G_protein-coupled_receptor_173,chrX:53078273-53109797:+,FAM156B->chrX:52920336-52937587:+,family_with_sequence_similarity_156_member_B	TM31_CENTRAL_NERVOUS_SYSTEM	0.23	0.28	0.0561	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	GPR173--FAM156B	1	10	GPR173	1394	chrX:53078666:+	FAM156B	14124	chrX:52928085:+	ONLY_REF_SPLICE	YES	17	16	0.39	0.41	0.0112	0.1123	GPR173->G_protein-coupled_receptor_173,chrX:53078273-53109797:+,FAM156B->chrX:52920336-52937587:+,family_with_sequence_similarity_156_member_B	TM31_CENTRAL_NERVOUS_SYSTEM	0.39	0.41	0.1235	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	ASAP1--FAM49B	3	1	ASAP1	40949	chr8:131070200:-	FAM49B	49409	chr8:130983241:-	ONLY_REF_SPLICE	YES	210	1	0.02	0.8	0.0337	0.0112	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	TM31_CENTRAL_NERVOUS_SYSTEM	0.02	0.8	0.0449	FALSE	0	0	0	1	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	CCDC85C--HEATR1	3	1	CCDC85C	6426	chr14:100002352:-	HEATR1	18535	chr1:236767427:-	ONLY_REF_SPLICE	YES	16	1	0.2	0.8	0.0337	0.0112	CCDC85C->chr14:99977603-100070363:-,coiled-coil_domain_containing_85C,HEATR1->HEAT_repeat_containing_1,chr1:236712305-236767804:-	TM31_CENTRAL_NERVOUS_SYSTEM	0.2	0.8	0.0449	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	MT-ND1--ATN1	3	0	MT-ND1	1260	chrM:3566:+	ATN1	9864	chr12:7045763:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,ATN1->atrophin_1,chr12:7033626-7051484:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	FALSE	0	0	0	1	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	NRP2--FLG	3	0	NRP2	18212	chr2:206614528:+	FLG	48772	chr1:152276138:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	NRP2->chr2:206546714-206662857:+,neuropilin_2,FLG->chr1:152274651-152297679:-,filaggrin	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	NRP2--FLG	3	0	NRP2	18201	chr2:206614517:+	FLG	42927	chr1:152281983:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	NRP2->chr2:206546714-206662857:+,neuropilin_2,FLG->chr1:152274651-152297679:-,filaggrin	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	NRP2--FLG	3	0	NRP2	18212	chr2:206614528:+	FLG	47800	chr1:152277110:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	NRP2->chr2:206546714-206662857:+,neuropilin_2,FLG->chr1:152274651-152297679:-,filaggrin	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	NRP2--FLG	3	0	NRP2	18201	chr2:206614517:+	FLG	48762	chr1:152276148:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	NRP2->chr2:206546714-206662857:+,neuropilin_2,FLG->chr1:152274651-152297679:-,filaggrin	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	NRP2--FLG	3	0	NRP2	18197	chr2:206614513:+	FLG	47786	chr1:152277124:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	NRP2->chr2:206546714-206662857:+,neuropilin_2,FLG->chr1:152274651-152297679:-,filaggrin	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	NRP2--FLG	3	0	NRP2	18212	chr2:206614528:+	FLG	42937	chr1:152281973:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	NRP2->chr2:206546714-206662857:+,neuropilin_2,FLG->chr1:152274651-152297679:-,filaggrin	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	EML1--FAM72A	2	3	EML1	1168	chr14:100204197:+	FAM72A	44646	chr1:206141446:+	ONLY_REF_SPLICE	NO	36	53	0.12	0.09	0.0225	0.0337	EML1->chr14:100204030-100408397:+,echinoderm_microtubule_associated_protein_like_1,FAM72A->chr1:206136916-206155151:+,family_with_sequence_similarity_72_member_A	TM31_CENTRAL_NERVOUS_SYSTEM	0.09	0.12	0.0562	TRUE	0	0	0	1	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	GAK--PIGG	2	1	GAK	18449	chr4:877825:-	PIGG	57579	chr4:524225:+	ONLY_REF_SPLICE	YES	46	37	0.06	0.07	0.0225	0.0112	GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase,PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G	TM31_CENTRAL_NERVOUS_SYSTEM	0.06	0.07	0.0337	TRUE	0	0	0	1	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	NCOR2--UBC	2	1	NCOR2	3484	chr12:125002686:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	5	8	0.38	0.27	0.0225	0.0112	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	TM31_CENTRAL_NERVOUS_SYSTEM	0.27	0.38	0.0337	TRUE	7	26	3	12	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	ABCB7--UPRT	2	0	ABCB7	1628	chrX:74375940:-	UPRT	26096	chrX:74516177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	ABCB7->ATP_binding_cassette_subfamily_B_member_7,chrX:74273115-74376567:-,UPRT->chrX:74493920-74524435:+,uracil_phosphoribosyltransferase_homolog	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	2	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	ALG10B--SMCO2	2	0	ALG10B	2881	chr12:38712260:+	SMCO2	14030	chr12:27627719:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	ALG10B->ALG10B,_alpha-1,2-glucosyltransferase,chr12:38710380-38717784:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	AP2M1--CSDE1	2	0	AP2M1	6526	chr3:183898669:+	CSDE1	20751	chr1:115282346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	AP2M1->adaptor_related_protein_complex_2_mu_1_subunit,chr3:183892477-183901879:+,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	ATP5B--IVNS1ABP	2	0	ATP5B	4557	chr12:57036242:-	IVNS1ABP	17049	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	1	0	1	1	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	CACNA2D1--BAZ1B	2	0	CACNA2D1	4816	chr7:81964451:-	BAZ1B	56963	chr7:72892899:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	CACNA2D1->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_1,chr7:81575760-82073114:-,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	CTD-3018O17.3--AADAT	2	0	CTD-3018O17.3	3169	chr19:52898851:-	AADAT	12610	chr4:171010887:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	CTD-3018O17.3->chr19:52892095-52901019:-,AADAT->aminoadipate_aminotransferase,chr4:170981373-171012850:-	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	DCP1B--ZNF667-AS1	2	0	DCP1B	8051	chr12:2074724:-	ZNF667-AS1	22287	chr19:57005532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	DCP1B->chr12:2055220-2113701:-,decapping_mRNA_1B,ZNF667-AS1->ZNF667_antisense_RNA_1_(head_to_head),chr19:56988619-57012035:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	DIAPH3--AC074212.6	2	0	DIAPH3	10484	chr13:60582678:-	AC074212.6	38476	chr19:46274748:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3,AC074212.6->chr19:46271054-46275762:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	DKC1--FLNA	2	0	DKC1	1226	chrX:153991256:+	FLNA	18589	chrX:153596458:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	DKC1->Oncogene{Bushman},chrX:153991031-154005964:+,dyskerin_pseudouridine_synthase_1,FLNA->chrX:153576892-153603006:-,filamin_A	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	DKK1--PATL1	2	0	DKK1	3140	chr10:54076195:+	PATL1	16251	chr11:59420060:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	DKK1->Oncogene{Bushman},chr10:54074056-54077802:+,dickkopf_WNT_signaling_pathway_inhibitor_1,PATL1->PAT1_homolog_1,_processing_body_mRNA_decay_factor,chr11:59404189-59436453:-	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	FAM115A--RPIA	2	0	FAM115A	6016	chr7:143573082:-	RPIA	28572	chr2:89049498:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	FAM115A->chr7:143548468-143599291:-,RPIA->chr2:88991162-89050452:+,ribose_5-phosphate_isomerase_A	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	FAM20C--PRKAR1B	2	0	FAM20C	5852	chr7:208976:+	PRKAR1B	22217	chr7:751164:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cortex=1},{Klijn_CCL:Skin=1},FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	2	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	FNTB--HNRNPC	2	0	FNTB	4635	chr14:65453815:+	HNRNPC	31819	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	FNTB->chr14:65381203-65529368:+,farnesyltransferase,_CAAX_box,_beta,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	GAK--PIGG	2	0	GAK	18449	chr4:877825:-	PIGG	60961	chr4:527607:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase,PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	GIGYF2--ZSWIM7	2	0	GIGYF2	18641	chr2:233626146:+	ZSWIM7	64699	chr17:15880406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,ZSWIM7->chr17:15879874-15903031:-,zinc_finger_SWIM-type_containing_7	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	GPR173--FAM156B	2	0	GPR173	1394	chrX:53078666:+	FAM156B	16700	chrX:52936136:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GPR173->G_protein-coupled_receptor_173,chrX:53078273-53109797:+,FAM156B->chrX:52920336-52937587:+,family_with_sequence_similarity_156_member_B	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	GSE1--FUS	2	0	GSE1	2365	chr16:85647004:+	FUS	33496	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	HERPUD2--GEN1	2	0	HERPUD2	7849	chr7:35677960:-	GEN1	16155	chr2:17941196:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	HERPUD2->HERPUD_family_member_2,chr7:35672269-35735181:-,GEN1->GEN1,_Holliday_junction_5'_flap_endonuclease,Oncogene{Bushman},chr2:17935125-17966632:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	MED13L--NEDD4L	2	0	MED13L	3147	chr12:116675273:-	NEDD4L	51057	chr18:55833020:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,NEDD4L->chr18:55711599-56068772:+,neural_precursor_cell_expressed,_developmentally_down-regulated_4-like,_E3_ubiquitin_protein_ligase	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	MEG8--ZFYVE26	2	0	MEG8	5852	chr14:101373469:+	ZFYVE26	33793	chr14:68251994:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	MEG8->chr14:101361107-101402336:+,maternally_expressed_8_(non-protein_coding),ZFYVE26->Oncogene{Bushman},chr14:68194091-68283307:-,zinc_finger_FYVE-type_containing_26	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	NAV2--CDK8	2	0	NAV2	1304	chr11:19372574:+	CDK8	62306	chr13:26923209:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	NAV2->chr11:19372271-20143144:+,neuron_navigator_2,CDK8->ArcherDX_panel,FoundationOne_panel,chr13:26828276-26979375:+,cyclin-dependent_kinase_8	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	PCMTD1--MYH9	2	0	PCMTD1	7395	chr8:52758221:-	MYH9	40695	chr22:36701148:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	PRRC2B--CDC25C	2	0	PRRC2B	8645	chr9:134322593:+	CDC25C	46920	chr5:137661743:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,CDC25C->Oncogene{Bushman},cell_division_cycle_25C,chr5:137620954-137674044:-	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	RNF180--PAPD4	2	0	RNF180	1110	chr5:63461780:+	PAPD4	31998	chr5:78964715:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RNF180->chr5:63461671-63668696:+,ring_finger_protein_180,PAPD4->PAP_associated_domain_containing_4,chr5:78907943-78982471:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	RP11-196G11.1--MAPKAPK5	2	0	RP11-196G11.1	1400	chr16:31105878:-	MAPKAPK5	14596	chr12:112303054:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RP11-196G11.1->chr16:31094760-31106277:-,MAPKAPK5->chr12:112279782-112334343:+,mitogen-activated_protein_kinase-activated_protein_kinase_5	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	RP5-864K19.4--SRP9	2	0	RP5-864K19.4	1240	chr1:39325911:+	SRP9	9083	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RP5-864K19.4->chr1:39325672-39385068:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	RPUSD3--ARPC4	2	0	RPUSD3	3620	chr3:9883667:-	ARPC4	16726	chr3:9845527:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},LOCAL_INVERSION:-:+:[30123],RPUSD3->RNA_pseudouridylate_synthase_domain_containing_3,chr3:9879533-9886286:-,ARPC4->actin_related_protein_2/3_complex_subunit_4,chr3:9834179-9849410:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	SERAC1--GTF2H5	2	0	SERAC1	15556	chr6:158551405:-	GTF2H5	32285	chr6:158613009:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[72],SERAC1->chr6:158530536-158589312:-,serine_active_site_containing_1,GTF2H5->chr6:158589384-158620376:+,general_transcription_factor_IIH_subunit_5	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	SSH3--C9orf72	2	0	SSH3	5181	chr11:67075929:+	C9orf72	13516	chr9:27567162:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	SSH3->chr11:67070919-67080078:+,slingshot_protein_phosphatase_3,C9orf72->chr9:27546544-27573864:-,chromosome_9_open_reading_frame_72	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	TICAM1--NUP88	2	0	TICAM1	1091	chr19:4831626:-	NUP88	22632	chr17:5290430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1,NUP88->chr17:5264258-5323480:-,nucleoporin_88	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	26959	chr10:75454562:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	2	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	TMEM117--RAD17	2	0	TMEM117	3724	chr12:44338145:+	RAD17	19183	chr5:68666862:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117,RAD17->RAD17_checkpoint_clamp_loader_component,chr5:68665120-68710628:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	TMEM126B--AHSA2	2	0	TMEM126B	6035	chr11:85346822:+	AHSA2	11357	chr2:61406116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TMEM126B->chr11:85339629-85347580:+,transmembrane_protein_126B,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	TMEM30A--MAN2A1	2	0	TMEM30A	6490	chr6:75970540:-	MAN2A1	21333	chr5:109091030:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TMEM30A->chr6:75962640-75994684:-,transmembrane_protein_30A,MAN2A1->chr5:109025067-109205326:+,mannosidase_alpha_class_2A_member_1	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	UQCRC2--GLB1	2	0	UQCRC2	1797	chr16:21964777:+	GLB1	32512	chr3:33087724:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II,GLB1->Oncogene{Bushman},chr3:33038100-33138722:-,galactosidase_beta_1	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	ZNF519--MAPK14	2	0	ZNF519	2343	chr18:14124349:-	MAPK14	35575	chr6:36070348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,MAPK14->Oncogene{Bushman},chr6:35995488-36079013:+,mitogen-activated_protein_kinase_14	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	ZRANB3--PIGG	2	0	ZRANB3	2907	chr2:136261899:-	PIGG	55814	chr4:524225:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3,PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G	TM31_CENTRAL_NERVOUS_SYSTEM	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	1	1	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	NO	2248	154	0	0.01	0.0112	0.0112	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	TM31_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0224	FALSE	0	20	0	35	2	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	1	1	CD44	6502	chr11:35211612:+	PDHX	39859	chr11:34999671:+	ONLY_REF_SPLICE	NO	2248	144	0	0.01	0.0112	0.0112	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	TM31_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0224	FALSE	0	0	0	3	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	1	1	CD44	1501	chr11:35160917:+	PDHX	40918	chr11:35006117:+	ONLY_REF_SPLICE	NO	2367	157	0	0.01	0.0112	0.0112	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	TM31_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0224	FALSE	0	2	0	7	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	EVL--KCNH1	1	1	EVL	9362	chr14:100563995:+	KCNH1	38747	chr1:211192598:-	ONLY_REF_SPLICE	NO	55	1	0.04	0.67	0.0112	0.0112	EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+,KCNH1->Oncogene{Bushman},chr1:210856555-211307457:-,potassium_voltage-gated_channel_subfamily_H_member_1	TM31_CENTRAL_NERVOUS_SYSTEM	0.04	0.67	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	EVL--KCNH1	1	1	EVL	10525	chr14:100568716:+	KCNH1	38747	chr1:211192598:-	ONLY_REF_SPLICE	YES	61	1	0.03	0.67	0.0112	0.0112	EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+,KCNH1->Oncogene{Bushman},chr1:210856555-211307457:-,potassium_voltage-gated_channel_subfamily_H_member_1	TM31_CENTRAL_NERVOUS_SYSTEM	0.03	0.67	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	PAWR--RP1-78O14.1	1	1	PAWR	2369	chr12:80083509:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	69	0	0.03	1	0.0112	0.0112	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	TM31_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0224	FALSE	0	7	0	7	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	6791	chr13:34094095:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	32	0.5	0.06	0.0112	0.0112	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	TM31_CENTRAL_NERVOUS_SYSTEM	0.06	0.5	0.0224	FALSE	1	2	1	7	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	SORBS2--SLC9B1	1	1	SORBS2	38016	chr4:186547986:-	SLC9B1	64449	chr4:103853456:-	ONLY_REF_SPLICE	YES	170	7	0.01	0.22	0.0112	0.0112	SORBS2->Oncogene{Bushman},chr4:186506598-186877806:-,sorbin_and_SH3_domain_containing_2,SLC9B1->chr4:103806205-103940896:-,solute_carrier_family_9_member_B1	TM31_CENTRAL_NERVOUS_SYSTEM	0.01	0.22	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	TTC19--NCOR1	1	1	TTC19	10186	chr17:15930016:+	NCOR1	62410	chr17:15961913:-	ONLY_REF_SPLICE	YES	93	62	0.02	0.03	0.0112	0.0112	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=8;pct=0.09%;dist=Stomach=1,Brain_-_Hypothalamus=1,Esophagus_-_Mucosa=1,Adrenal_Gland=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},NEIGHBORS_OVERLAP:+:-:[15858],TTC19->chr17:15902694-15948329:+,tetratricopeptide_repeat_domain_19,NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1	TM31_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.0224	FALSE	1	0	0	1	0	FALSE	ACH-000592
TM31_CENTRAL_NERVOUS_SYSTEM	UNK--MRC2	1	1	UNK	1385	chr17:73781065:+	MRC2	37759	chr17:60765650:+	ONLY_REF_SPLICE	NO	40	186	0.05	0.01	0.0112	0.0112	UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2	TM31_CENTRAL_NERVOUS_SYSTEM	0.01	0.05	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000592
SKPNDW_BONE	PVT1--MYC	1054	2522	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	1793	943	0.67	0.79	19.4886	46.6321	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.67	0.79	66.1207	TRUE	3	14	0	24	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	445	2522	PVT1	1202	chr8:128806980:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	1793	917	0.62	0.76	8.2281	46.6321	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.62	0.76	54.8602	TRUE	3	14	0	24	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	105	2702	PVT1	6936	chr8:128867565:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	1337	917	0.68	0.75	1.9415	49.9603	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.68	0.75	51.9018	TRUE	0	1	0	1	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	56	2703	PVT1	6936	chr8:128867565:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	1337	943	0.67	0.75	1.0354	49.9788	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.67	0.75	51.0142	TRUE	0	1	0	1	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	66	2586	PVT1	2457	chr8:128808254:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	1644	943	0.62	0.74	1.2203	47.8155	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.62	0.74	49.0358	TRUE	0	6	0	6	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	12	2724	PVT1	6936	chr8:128867565:+	MYC	29459	chr8:128748687:+	ONLY_REF_SPLICE	YES	1337	1050	0.67	0.72	0.2219	50.3671	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.67	0.72	50.589	TRUE	0	0	0	1	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	3	2724	PVT1	6936	chr8:128867565:+	MYC	29462	chr8:128748690:+	INCL_NON_REF_SPLICE	YES	1337	1047	0.67	0.72	0.0555	50.3671	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.67	0.72	50.4226	TRUE	0	0	0	1	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	30	2609	PVT1	2520	chr8:128808317:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	1650	917	0.62	0.74	0.5547	48.2407	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.62	0.74	48.7954	TRUE	0	6	0	6	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	32	2585	PVT1	2457	chr8:128808254:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	1644	917	0.61	0.74	0.5917	47.797	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.61	0.74	48.3887	TRUE	0	6	0	6	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	18	2610	PVT1	2520	chr8:128808317:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	1650	943	0.61	0.74	0.3328	48.2592	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.61	0.74	48.592	TRUE	0	6	0	6	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	4	2610	PVT1	3930	chr8:128815805:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	1641	943	0.61	0.73	0.074	48.2592	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.61	0.73	48.3332	TRUE	0	0	0	2	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	1	2613	PVT1	5344	chr8:128864593:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	1583	943	0.62	0.73	0.0185	48.3147	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.62	0.73	48.3332	TRUE	0	0	0	1	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	3	2602	PVT1	2457	chr8:128808254:+	MYC	29459	chr8:128748687:+	ONLY_REF_SPLICE	YES	1644	1050	0.61	0.71	0.0555	48.1113	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.61	0.71	48.1668	TRUE	0	2	0	1	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	1	2609	PVT1	3930	chr8:128815805:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	NO	1641	917	0.61	0.74	0.0185	48.2407	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.61	0.74	48.2592	TRUE	0	0	0	2	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	14	2537	PVT1	1202	chr8:128806980:+	MYC	29459	chr8:128748687:+	ONLY_REF_SPLICE	YES	1793	1050	0.59	0.71	0.2589	46.9094	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.59	0.71	47.1683	TRUE	0	1	0	1	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	5	2523	PVT1	1202	chr8:128806980:+	MYC	29601	chr8:128748829:+	INCL_NON_REF_SPLICE	YES	1793	889	0.59	0.74	0.0925	46.6506	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.59	0.74	46.7431	TRUE	0	1	0	1	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	1	2013	PVT1	2457	chr8:128808254:+	MYC	30686	chr8:128750538:+	ONLY_REF_SPLICE	YES	1644	859	0.55	0.7	0.0185	37.2206	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.55	0.7	37.2391	TRUE	0	6	0	6	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	6	1964	PVT1	1202	chr8:128806980:+	MYC	30686	chr8:128750538:+	ONLY_REF_SPLICE	YES	1793	859	0.52	0.7	0.1109	36.3146	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0.52	0.7	36.4255	TRUE	3	14	0	24	0	FALSE	ACH-001193
SKPNDW_BONE	EWSR1--FLI1	96	106	EWSR1	11554	chr22:29683123:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	389	5	0.34	0.98	1.7751	1.96	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKPNDW_BONE	0.34	0.98	3.7351	TRUE	0	0	0	6	0	TRUE	ACH-001193
SKPNDW_BONE	TIMM23B--LINC00843	47	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.869	0.3698	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKPNDW_BONE	1	1	1.2388	TRUE	508	994	45	981	0	FALSE	ACH-001193
SKPNDW_BONE	TIMM23--RP11-464F9.1	31	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	211	4	0.14	0.89	0.5732	0.037	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKPNDW_BONE	0.14	0.89	0.6102	TRUE	519	3926	326	965	0	FALSE	ACH-001193
SKPNDW_BONE	ZNF654--HMGB2	31	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5732	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKPNDW_BONE	1	1	0.5732	TRUE	0	0	0	518	0	FALSE	ACH-001193
SKPNDW_BONE	MT-TA--MT-TC	17	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3143	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKPNDW_BONE	1	1	0.3143	FALSE	462	80	0	856	0	FALSE	ACH-001193
SKPNDW_BONE	EWSR1--FLI1	3	47	EWSR1	11554	chr22:29683123:+	FLI1	40528	chr11:128679052:+	ONLY_REF_SPLICE	YES	389	19	0.11	0.72	0.0555	0.869	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKPNDW_BONE	0.11	0.72	0.9245	TRUE	0	0	0	5	0	TRUE	ACH-001193
SKPNDW_BONE	XXbac-BPG252P9.9--TUBBP2	13	2	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	YES	3682	0	0	1	0.2404	0.037	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SKPNDW_BONE	0	1	0.2774	TRUE	0	1	0	48	1	FALSE	ACH-001193
SKPNDW_BONE	RP11-123O10.4--GRIP1	10	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1849	0.1294	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKPNDW_BONE	1	1	0.3143	FALSE	416	2512	207	587	0	FALSE	ACH-001193
SKPNDW_BONE	MTND6P4--MT-TE	10	1	MTND6P4	1052	chr5:134259864:+	MT-TE	4548	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1849	0.0185	MTND6P4->chr5:134259813-134260334:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6_pseudogene_4,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKPNDW_BONE	1	1	0.2034	FALSE	0	5	0	2	0	FALSE	ACH-001193
SKPNDW_BONE	MT-ND5--MT-ND6	9	2	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	5	2527	0.69	0	0.1664	0.037	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SKPNDW_BONE	0	0.69	0.2034	FALSE	26	124	4	93	0	FALSE	ACH-001193
SKPNDW_BONE	NSF--LRRC37A2	5	12	NSF	15332	chr17:44782220:+	LRRC37A2	28875	chr17:44588877:+	ONLY_REF_SPLICE	YES	180	0	0.09	1	0.0925	0.2219	LOCAL_REARRANGEMENT:+:[35019],NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	SKPNDW_BONE	0.09	1	0.3144	TRUE	1	0	0	3	0	TRUE	ACH-001193
SKPNDW_BONE	RP11-120D5.1--MID1	7	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	14	0.92	0.44	0.1294	0.074	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKPNDW_BONE	0.44	0.92	0.2034	FALSE	16	356	14	466	0	FALSE	ACH-001193
SKPNDW_BONE	AC023481.1--LMCD1-AS1	5	9	AC023481.1	1799	chr3:8407280:-	LMCD1-AS1	13416	chr3:8264406:-	ONLY_REF_SPLICE	YES	28	0	0.33	1	0.0925	0.1664	NEIGHBORS_OVERLAP:-:-:[1685],AC023481.1->chr3:8406393-8408078:-,LMCD1-AS1->LMCD1_antisense_RNA_1_(head_to_head),chr3:7994492-8653610:-	SKPNDW_BONE	0.33	1	0.2589	FALSE	0	0	0	2	0	FALSE	ACH-001193
SKPNDW_BONE	PVT1--MYC	3	17	PVT1	1202	chr8:128806980:+	MYC	32414	chr8:128752642:+	ONLY_REF_SPLICE	YES	1793	3985	0.01	0	0.0555	0.3143	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SKPNDW_BONE	0	0.01	0.3698	TRUE	0	3	0	4	1	FALSE	ACH-001193
SKPNDW_BONE	NSF--LRRC37A2	4	11	NSF	15332	chr17:44782220:+	LRRC37A2	33686	chr17:44594728:+	ONLY_REF_SPLICE	YES	180	31	0.08	0.33	0.074	0.2034	LOCAL_REARRANGEMENT:+:[35019],NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	SKPNDW_BONE	0.08	0.33	0.2774	TRUE	1	0	0	3	0	TRUE	ACH-001193
SKPNDW_BONE	XXbac-BPG252P9.9--TUBBP2	6	3	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	NO	3714	0	0	1	0.1109	0.0555	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SKPNDW_BONE	0	1	0.1664	FALSE	0	1	0	48	1	FALSE	ACH-001193
SKPNDW_BONE	MTND6P4--MT-TE	6	1	MTND6P4	1054	chr5:134259866:+	MT-TE	4551	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1109	0.0185	MTND6P4->chr5:134259813-134260334:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6_pseudogene_4,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKPNDW_BONE	1	1	0.1294	FALSE	0	5	0	2	0	FALSE	ACH-001193
SKPNDW_BONE	BRPF3--MAPK14	5	4	BRPF3	16926	chr6:36198493:+	MAPK14	26640	chr6:36040650:+	INCL_NON_REF_SPLICE	YES	50	122	0.15	0.07	0.0925	0.074	LOCAL_REARRANGEMENT:+:[85508],BRPF3->bromodomain_and_PHD_finger_containing_3,chr6:36164521-36200567:+,MAPK14->Oncogene{Bushman},chr6:35995488-36079013:+,mitogen-activated_protein_kinase_14	SKPNDW_BONE	0.07	0.15	0.1665	TRUE	0	0	0	1	0	TRUE	ACH-001193
SKPNDW_BONE	MT-TA--MT-TC	6	0	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1109	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKPNDW_BONE	1	1	0.1109	FALSE	462	80	0	856	0	FALSE	ACH-001193
SKPNDW_BONE	XXbac-BPG252P9.9--TUBBP2	5	1	XXbac-BPG252P9.9	1068	chr6:30691587:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	2468	0	0	1	0.0925	0.0185	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SKPNDW_BONE	0	1	0.111	TRUE	0	1	0	48	1	FALSE	ACH-001193
SKPNDW_BONE	MT-TA--MT-TC	5	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0925	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKPNDW_BONE	1	1	0.0925	FALSE	462	80	0	856	0	FALSE	ACH-001193
SKPNDW_BONE	RP11-408A13.2--NFIB	4	4	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	114	1	0.07	0.074	0.074	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	SKPNDW_BONE	0.07	1	0.148	TRUE	0	14	0	20	14	FALSE	ACH-001193
SKPNDW_BONE	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0925	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKPNDW_BONE	1	1	0.0925	TRUE	458	1351	185	561	0	FALSE	ACH-001193
SKPNDW_BONE	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0925	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKPNDW_BONE	1	1	0.0925	TRUE	465	1949	224	605	0	FALSE	ACH-001193
SKPNDW_BONE	XXbac-BPG252P9.9--TUBBP2	4	1	XXbac-BPG252P9.9	1083	chr6:30691572:-	TUBBP2	4900	chr13:41959193:-	INCL_NON_REF_SPLICE	YES	3089	0	0	1	0.074	0.0185	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SKPNDW_BONE	0	1	0.0925	FALSE	0	1	0	48	1	FALSE	ACH-001193
SKPNDW_BONE	XXbac-BPG252P9.9--TUBBP2	4	1	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	1447	0	0	1	0.074	0.0185	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SKPNDW_BONE	0	1	0.0925	FALSE	0	1	0	48	1	FALSE	ACH-001193
SKPNDW_BONE	C17orf76-AS1--GNAS	4	0	C17orf76-AS1	1593	chr17:16342728:+	GNAS	29039	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.074	0	C17orf76-AS1->chr17:16342136-16381992:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SKPNDW_BONE	1	1	0.074	TRUE	0	0	0	4	0	TRUE	ACH-001193
SKPNDW_BONE	FOXK2--HEXDC	3	3	FOXK2	6226	chr17:80529746:+	HEXDC	26698	chr17:80377625:+	ONLY_REF_SPLICE	YES	247	0	0.02	1	0.0555	0.0555	LOCAL_REARRANGEMENT:+:[77068],FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,HEXDC->chr17:80376194-80400521:+,hexosaminidase_D	SKPNDW_BONE	0.02	1	0.111	TRUE	0	0	0	1	0	FALSE	ACH-001193
SKPNDW_BONE	XXbac-BPG252P9.9--TUBBP2	3	2	XXbac-BPG252P9.9	1137	chr6:30691518:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	NO	3979	0	0	1	0.0555	0.037	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SKPNDW_BONE	0	1	0.0925	FALSE	0	1	0	48	1	FALSE	ACH-001193
SKPNDW_BONE	XXbac-BPG252P9.9--TUBBP2	3	2	XXbac-BPG252P9.9	1174	chr6:30691481:-	TUBBP2	4909	chr13:41959184:-	INCL_NON_REF_SPLICE	NO	3797	0	0	1	0.0555	0.037	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SKPNDW_BONE	0	1	0.0925	FALSE	0	1	0	48	1	FALSE	ACH-001193
SKPNDW_BONE	EWSR1--FLI1	1	9	EWSR1	9174	chr22:29674205:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	856	5	0.01	0.67	0.0185	0.1664	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKPNDW_BONE	0.01	0.67	0.1849	TRUE	0	0	0	1	0	FALSE	ACH-001193
SKPNDW_BONE	RNF212--CTBP1	3	1	RNF212	6789	chr4:1090553:-	CTBP1	25519	chr4:1235307:-	ONLY_REF_SPLICE	YES	433	56	0.01	0.07	0.0555	0.0185	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[97886],RNF212->chr4:1050038-1107350:-,ring_finger_protein_212,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SKPNDW_BONE	0.01	0.07	0.074	FALSE	1	6	0	5	1	FALSE	ACH-001193
SKPNDW_BONE	TBC1D1--C4orf19	3	1	TBC1D1	20643	chr4:38055959:+	C4orf19	42463	chr4:37559649:+	ONLY_REF_SPLICE	YES	15	0	0.21	1	0.0555	0.0185	TBC1D1->TBC1_domain_family_member_1,chr4:37892708-38140796:+,C4orf19->chr4:37455563-37625117:+,chromosome_4_open_reading_frame_19	SKPNDW_BONE	0.21	1	0.074	TRUE	0	0	0	1	0	TRUE	ACH-001193
SKPNDW_BONE	XXbac-BPG252P9.9--TUBBP2	3	1	XXbac-BPG252P9.9	1167	chr6:30691488:-	TUBBP2	5010	chr13:41959083:-	INCL_NON_REF_SPLICE	NO	3896	0	0	1	0.0555	0.0185	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SKPNDW_BONE	0	1	0.074	FALSE	0	1	0	48	1	FALSE	ACH-001193
SKPNDW_BONE	CTB-78F1.2--TENM2	3	0	CTB-78F1.2	1045	chr5:167148412:+	TENM2	14028	chr5:167379593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0555	0	NEIGHBORS_OVERLAP:+:+:[7761],CTB-78F1.2->chr5:167148368-167156129:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	SKPNDW_BONE	1	1	0.0555	FALSE	1	4	0	8	0	FALSE	ACH-001193
SKPNDW_BONE	MTND6P4--MT-TE	3	0	MTND6P4	1057	chr5:134259869:+	MT-TE	4578	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	MTND6P4->chr5:134259813-134260334:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6_pseudogene_4,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKPNDW_BONE	1	1	0.0555	FALSE	0	5	0	2	0	FALSE	ACH-001193
SKPNDW_BONE	LINC01036--LINC01037	2	1	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0.0185	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SKPNDW_BONE	1	1	0.0555	FALSE	0	26	0	50	0	FALSE	ACH-001193
SKPNDW_BONE	LINC01036--LINC01037	2	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0.0185	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SKPNDW_BONE	1	1	0.0555	FALSE	0	24	0	62	0	FALSE	ACH-001193
SKPNDW_BONE	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SKPNDW_BONE	1	1	0.037	TRUE	347	1186	183	220	0	FALSE	ACH-001193
SKPNDW_BONE	FAM160B1--PKN2	2	0	FAM160B1	3629	chr10:116593161:+	PKN2	23225	chr1:89206671:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	FAM160B1->chr10:116581503-116659591:+,family_with_sequence_similarity_160_member_B1,PKN2->chr1:89149905-89301938:+,protein_kinase_N2	SKPNDW_BONE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-001193
SKPNDW_BONE	NFIC--AHSA2	2	0	NFIC	9118	chr19:3435205:+	AHSA2	27240	chr2:61406116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	NFIC->Oncogene{Bushman},chr19:3359561-3469215:+,nuclear_factor_I_C,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	SKPNDW_BONE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-001193
SKPNDW_BONE	POLR3B--DEK	2	0	POLR3B	25722	chr12:106857398:+	DEK	36635	chr6:18258636:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	POLR3B->chr12:106751436-106903976:+,polymerase_(RNA)_III_subunit_B,DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-	SKPNDW_BONE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-001193
SKPNDW_BONE	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKPNDW_BONE	1	1	0.037	FALSE	515	4851	409	746	0	FALSE	ACH-001193
SKPNDW_BONE	SOX6--TTC3	2	0	SOX6	47012	chr11:16007750:-	TTC3	76212	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	SOX6->SRY-box_6,chr11:15987995-16761138:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	SKPNDW_BONE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-001193
SKPNDW_BONE	FOXK2--HEXDC	1	3	FOXK2	6226	chr17:80529746:+	HEXDC	29456	chr17:80382270:+	ONLY_REF_SPLICE	NO	247	17	0.02	0.19	0.0185	0.0555	LOCAL_REARRANGEMENT:+:[77068],FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,HEXDC->chr17:80376194-80400521:+,hexosaminidase_D	SKPNDW_BONE	0.02	0.19	0.074	TRUE	0	0	0	1	0	FALSE	ACH-001193
SKPNDW_BONE	RNF41--CSPG5	1	2	RNF41	8038	chr12:56601430:-	CSPG5	19144	chr3:47614364:-	ONLY_REF_SPLICE	YES	142	73	0.02	0.04	0.0185	0.037	RNF41->chr12:56598285-56615717:-,ring_finger_protein_41,CSPG5->chondroitin_sulfate_proteoglycan_5,chr3:47603729-47622282:-	SKPNDW_BONE	0.02	0.04	0.0555	TRUE	0	0	0	1	0	FALSE	ACH-001193
SKPNDW_BONE	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	14	0.5	0.18	0.0185	0.037	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKPNDW_BONE	0.18	0.5	0.0555	FALSE	0	48	1	163	0	FALSE	ACH-001193
SKPNDW_BONE	AC023481.1--LMCD1-AS1	1	1	AC023481.1	1799	chr3:8407280:-	LMCD1-AS1	19245	chr3:8033989:-	ONLY_REF_SPLICE	YES	28	1	0.07	0.67	0.0185	0.0185	NEIGHBORS_OVERLAP:-:-:[1685],AC023481.1->chr3:8406393-8408078:-,LMCD1-AS1->LMCD1_antisense_RNA_1_(head_to_head),chr3:7994492-8653610:-	SKPNDW_BONE	0.07	0.67	0.037	FALSE	0	0	0	2	0	FALSE	ACH-001193
SKPNDW_BONE	BRPF3--MAPK14	1	1	BRPF3	15635	chr6:36196833:+	MAPK14	26640	chr6:36040650:+	ONLY_REF_SPLICE	YES	47	122	0.04	0.02	0.0185	0.0185	LOCAL_REARRANGEMENT:+:[85508],BRPF3->bromodomain_and_PHD_finger_containing_3,chr6:36164521-36200567:+,MAPK14->Oncogene{Bushman},chr6:35995488-36079013:+,mitogen-activated_protein_kinase_14	SKPNDW_BONE	0.02	0.04	0.037	TRUE	0	0	0	1	0	FALSE	ACH-001193
SKPNDW_BONE	FARS2--RP3-380B8.4	1	1	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	YES	7	0	0.22	1	0.0185	0.0185	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	SKPNDW_BONE	0.22	1	0.037	FALSE	27	82	4	18	0	FALSE	ACH-001193
SKPNDW_BONE	NDUFA4--PHF14	1	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	NO	1060	36	0	0.05	0.0185	0.0185	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SKPNDW_BONE	0	0.05	0.037	FALSE	19	32	3	60	0	FALSE	ACH-001193
SKPNDW_BONE	POLE4--RP11-355F16.1	1	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	130	0	0.02	1	0.0185	0.0185	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	SKPNDW_BONE	0.02	1	0.037	TRUE	5	7	0	37	0	FALSE	ACH-001193
SKPNDW_BONE	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	288	1	0.01	0.0185	0.0185	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKPNDW_BONE	0.01	1	0.037	FALSE	141	264	50	91	0	FALSE	ACH-001193
SKPNDW_BONE	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	288	1	0.01	0.0185	0.0185	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKPNDW_BONE	0.01	1	0.037	FALSE	49	120	16	70	0	FALSE	ACH-001193
SKPNDW_BONE	RP11-431D12.1--RP11-30J20.1	1	1	RP11-431D12.1	3482	chr8:137531482:+	RP11-30J20.1	8776	chr8:137549221:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0.0185	NEIGHBORS[922],RP11-431D12.1->chr8:137501691-137542119:+,RP11-30J20.1->chr8:137543041-137997178:+	SKPNDW_BONE	1	1	0.037	FALSE	0	0	0	1	0	FALSE	ACH-001193
SKPNDW_BONE	RP11-431D12.1--RP11-30J20.1	1	1	RP11-431D12.1	3482	chr8:137531482:+	RP11-30J20.1	9858	chr8:137743562:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0.0185	NEIGHBORS[922],RP11-431D12.1->chr8:137501691-137542119:+,RP11-30J20.1->chr8:137543041-137997178:+	SKPNDW_BONE	1	1	0.037	FALSE	0	0	0	1	0	FALSE	ACH-001193
SKPNDW_BONE	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0.0185	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKPNDW_BONE	1	1	0.037	TRUE	274	363	69	150	0	FALSE	ACH-001193
HEC251_ENDOMETRIUM	TIMM23B--LINC00843	114	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3831	0.4004	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HEC251_ENDOMETRIUM	1	1	1.7835	TRUE	508	994	45	981	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	TIMM23--RP11-464F9.1	82	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	194	10	0.3	0.89	0.9949	0.0243	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HEC251_ENDOMETRIUM	0.3	0.89	1.0192	TRUE	519	3926	326	965	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	HSPBP1--GRK5	62	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7522	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HEC251_ENDOMETRIUM	1	1	0.7522	TRUE	1	39	0	134	39	FALSE	ACH-000996
HEC251_ENDOMETRIUM	RECQL5--H3F3B	55	26	RECQL5	12732	chr17:73635949:-	H3F3B	29028	chr17:73775265:-	ONLY_REF_SPLICE	YES	59	666	0.58	0.11	0.6673	0.3155	RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-,H3F3B->H3_histone,_family_3B_(H3.3B),chr17:73772515-73781974:-	HEC251_ENDOMETRIUM	0.11	0.58	0.9828	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	INO80B--WDR54	57	10	INO80B	1378	chr2:74682527:+	WDR54	12879	chr2:74652564:+	INCL_NON_REF_SPLICE	YES	6	39	0.92	0.63	0.6916	0.1213	LOCAL_REARRANGEMENT:+:[29268],INO80B->INO80_complex_subunit_B,chr2:74682150-74688011:+,WDR54->WD_repeat_domain_54,chr2:74648805-74652882:+	HEC251_ENDOMETRIUM	0.63	0.92	0.8129	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	55	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6673	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.6673	FALSE	230	193	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	7	185	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	89	0	0.68	1	0.0849	2.2446	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.68	1	2.3295	FALSE	344	827	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	5	179	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	23	1	0.89	0.99	0.0607	2.1718	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.89	0.99	2.2325	FALSE	344	826	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	4	180	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	NO	69	1	0.73	0.99	0.0485	2.1839	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.73	0.99	2.2324	FALSE	344	826	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	3	184	MT-ND4	1285	chrM:11044:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	166	1	0.53	0.99	0.0364	2.2324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.53	0.99	2.2688	FALSE	344	827	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	3	183	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	90	1	0.67	0.99	0.0364	2.2203	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.67	0.99	2.2567	FALSE	344	827	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	3	183	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	72	0	0.72	1	0.0364	2.2203	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.72	1	2.2567	FALSE	344	826	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-TA--MT-TC	48	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5824	0.0121	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC251_ENDOMETRIUM	1	1	0.5945	FALSE	462	80	0	856	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	13	130	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	9	1	0.94	0.99	0.1577	1.5773	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.94	0.99	1.735	FALSE	344	821	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	9	130	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	8887	0	0.02	1	0.1092	1.5773	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.02	1	1.6865	FALSE	344	827	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	6	129	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	22	0	0.86	1	0.0728	1.5651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.86	1	1.6379	FALSE	344	826	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	3	131	MT-ND4	1093	chrM:10852:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	18	0	0.88	1	0.0364	1.5894	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.88	1	1.6258	FALSE	344	826	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	3	120	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	205	0	0.38	1	0.0364	1.4559	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.38	1	1.4923	FALSE	344	827	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND6--MT-TE	30	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.364	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC251_ENDOMETRIUM	1	1	0.364	FALSE	499	1288	110	792	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	3	107	MT-ND4	1170	chrM:10929:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	57	0	0.66	1	0.0364	1.2982	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.66	1	1.3346	FALSE	344	826	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	4	102	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	35	0	0.75	1	0.0485	1.2375	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.75	1	1.286	FALSE	344	826	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	18	39	MT-ND4	2344	chrM:12103:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2184	0.4732	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	1	1	0.6916	FALSE	263	700	35	281	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	25	10	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19334	2	0	0.95	0.3033	0.1213	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.95	0.4246	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	RECQL5--H3F3B	19	17	RECQL5	9289	chr17:73647266:-	H3F3B	29028	chr17:73775265:-	ONLY_REF_SPLICE	YES	52	666	0.41	0.05	0.2305	0.2063	RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-,H3F3B->H3_histone,_family_3B_(H3.3B),chr17:73772515-73781974:-	HEC251_ENDOMETRIUM	0.05	0.41	0.4368	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	22	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2669	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.2669	FALSE	230	198	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	12	39	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	14712	0	0	1	0.1456	0.4732	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0	1	0.6188	FALSE	328	800	43	304	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	19	7	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20556	0	0	1	0.2305	0.0849	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.3154	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	ZNF654--HMGB2	20	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2427	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HEC251_ENDOMETRIUM	1	1	0.2427	TRUE	0	0	0	518	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	C15orf57--CBX3	16	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	28	27	0.48	0.49	0.1941	0.1213	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEC251_ENDOMETRIUM	0.48	0.49	0.3154	TRUE	267	562	48	632	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	11	30	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8709	0	0	1	0.1335	0.364	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0	1	0.4975	FALSE	344	827	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND6--MT-TE	17	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2063	0.0728	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC251_ENDOMETRIUM	1	1	0.2791	FALSE	499	1288	110	792	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	RECQL5--H3F3B	9	32	RECQL5	13623	chr17:73635058:-	H3F3B	29028	chr17:73775265:-	ONLY_REF_SPLICE	YES	71	666	0.37	0.06	0.1092	0.3882	RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-,H3F3B->H3_histone,_family_3B_(H3.3B),chr17:73772515-73781974:-	HEC251_ENDOMETRIUM	0.06	0.37	0.4974	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	9	30	MT-ND4	1452	chrM:11211:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	849	0	0.04	1	0.1092	0.364	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.04	1	0.4732	FALSE	344	827	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	6	39	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1554	0	0.03	1	0.0728	0.4732	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.03	1	0.546	FALSE	344	827	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	8	30	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	11323	0	0	1	0.0971	0.364	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0	1	0.4611	FALSE	344	827	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	RECQL5--H3F3B	8	30	RECQL5	13579	chr17:73635102:-	H3F3B	29028	chr17:73775265:-	ONLY_REF_SPLICE	YES	69	666	0.36	0.05	0.0971	0.364	RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-,H3F3B->H3_histone,_family_3B_(H3.3B),chr17:73772515-73781974:-	HEC251_ENDOMETRIUM	0.05	0.36	0.4611	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	15	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17725	2	0	0.89	0.182	0.0121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.89	0.1941	FALSE	231	205	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	PAWR--RP1-78O14.1	13	8	PAWR	14819	chr12:79988109:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	102	0	0.17	1	0.1577	0.0971	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	HEC251_ENDOMETRIUM	0.17	1	0.2548	FALSE	0	4	0	4	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	7	28	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	7	0	0.83	1	0.0849	0.3397	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.83	1	0.4246	FALSE	344	821	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	3	41	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.0364	0.4974	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.94	1	0.5338	FALSE	344	821	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	APC--PIK3R1	11	7	APC	5179	chr5:112102087:+	PIK3R1	39493	chr5:67569215:+	INCL_NON_REF_SPLICE	YES	14	14	0.56	0.56	0.1335	0.0849	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,PIK3R1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:67511548-67597649:+,phosphoinositide-3-kinase_regulatory_subunit_1	HEC251_ENDOMETRIUM	0.56	0.56	0.2184	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	11	7	MT-ND4	1566	chrM:11325:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	21879	564	0	0.03	0.1335	0.0849	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.03	0.2184	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	9	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17651	52	0	0.29	0.1092	0.1456	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.29	0.2548	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND6--MT-TE	12	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1456	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC251_ENDOMETRIUM	1	1	0.1456	FALSE	499	1288	110	792	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1456	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HEC251_ENDOMETRIUM	1	1	0.1456	TRUE	0	0	0	434	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	8	15	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	19228	0	0	1	0.0971	0.182	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.2791	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	7	18	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	19612	0	0	1	0.0849	0.2184	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.3033	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	4	30	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	16520	0	0	1	0.0485	0.364	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0	1	0.4125	FALSE	343	822	44	305	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	4	30	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	89	0	0.28	1	0.0485	0.364	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.28	1	0.4125	FALSE	344	826	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-TA--MT-TC	11	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1335	0.0243	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC251_ENDOMETRIUM	1	1	0.1578	FALSE	462	80	0	856	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	7	16	MT-ND4	1818	chrM:11577:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	18784	0	0	1	0.0849	0.1941	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.279	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	NPM1P24--SET	11	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1335	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HEC251_ENDOMETRIUM	1	1	0.1335	TRUE	0	0	0	434	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	SLC1A5--MT-ND4L	11	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1335	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	1	1	0.1335	FALSE	0	0	0	189	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	4	27	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	30	0	0.51	1	0.0485	0.3276	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0.51	1	0.3761	FALSE	213	207	15	279	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	NPHP4--PDCL	10	3	NPHP4	34785	chr1:5925532:-	PDCL	45506	chr9:125581559:-	INCL_NON_REF_SPLICE	YES	19	16	0.41	0.45	0.1213	0.0364	NPHP4->chr1:5922871-6052533:-,nephronophthisis_4,PDCL->chr9:125560668-125590910:-,phosducin_like	HEC251_ENDOMETRIUM	0.41	0.45	0.1577	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	3	30	MT-ND4	1278	chrM:11037:+	MT-ND4L	5663	chrM:10754:+	INCL_NON_REF_SPLICE	YES	162	0	0.17	1	0.0364	0.364	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.17	1	0.4004	FALSE	344	827	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	29	MT-ND4	2302	chrM:12061:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	7	0	0.82	1	0.0364	0.3519	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0.82	1	0.3883	FALSE	209	205	15	279	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	29	MT-ND4	2332	chrM:12091:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.3519	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.3883	FALSE	209	205	15	279	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	10	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1213	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.1213	FALSE	230	193	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	8	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	19334	926	0	0.02	0.0971	0.0849	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.02	0.182	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	5	19	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	18221	0	0	1	0.0607	0.2305	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.2912	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	8	7	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	20436	0	0	1	0.0971	0.0849	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.182	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	7	11	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18659	52	0	0.26	0.0849	0.1335	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.26	0.2184	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	6	15	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	19323	0	0	1	0.0728	0.182	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.2548	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	7	10	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	8772	564	0	0.03	0.0849	0.1213	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.03	0.2062	FALSE	231	215	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	5	17	MT-ND4	1903	chrM:11662:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	19322	0	0	1	0.0607	0.2063	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.267	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	25	MT-ND4	2255	chrM:12014:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	2446	0	0.01	1	0.0364	0.3033	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0.01	1	0.3397	FALSE	216	209	16	281	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	8	5	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20782	52	0	0.2	0.0971	0.0607	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.2	0.1578	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	6	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	173	0	0.1	1	0.0728	0.1577	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.1	1	0.2305	FALSE	344	827	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	24	MT-ND4	2231	chrM:11990:+	MT-ATP8	5416	chrM:8403:+	INCL_NON_REF_SPLICE	NO	4430	0	0.01	1	0.0364	0.2912	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0.01	1	0.3276	FALSE	216	209	16	281	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	9	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1092	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.1092	FALSE	230	198	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	5	16	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2905	52	0.01	0.29	0.0607	0.1941	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0.01	0.29	0.2548	FALSE	216	209	16	281	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	7	7	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	19141	1624	0	0.01	0.0849	0.0849	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.01	0.1698	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	4	18	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	19176	0	0	1	0.0485	0.2184	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.2669	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	7	6	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	22444	820	0	0.02	0.0849	0.0728	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.02	0.1577	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	C1orf132--CD34	7	5	C1orf132	2221	chr1:208041271:-	CD34	26049	chr1:208073348:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0849	0.0607	LOCAL_REARRANGEMENT:-:[15099],C1orf132->chr1:207974863-208042495:-,chromosome_1_open_reading_frame_132,CD34->CD34_molecule,chr1:208057594-208084747:-	HEC251_ENDOMETRIUM	1	1	0.1456	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	7	5	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	20857	2	0	0.86	0.0849	0.0607	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.86	0.1456	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	21	MT-ND4	2170	chrM:11929:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	9326	0	0	1	0.0364	0.2548	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.2912	FALSE	231	215	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	5	13	MT-ND4	2157	chrM:11916:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10256	52	0	0.26	0.0607	0.1577	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.26	0.2184	FALSE	231	215	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	5	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	173	0	0.09	1	0.0607	0.1577	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.09	1	0.2184	FALSE	344	827	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	5	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	70	0	0.2	1	0.0607	0.1577	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.2	1	0.2184	FALSE	344	826	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	5	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	17651	194	0	0.08	0.0607	0.1456	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.08	0.2063	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	7	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.92	0.0849	0.0485	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.92	1	0.1334	FALSE	344	821	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	6	7	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	20821	0	0	1	0.0728	0.0849	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.1577	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	6	7	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	20444	0	0	1	0.0728	0.0849	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.1577	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	RP11-123O10.4--GRIP1	6	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	2	1	0.86	0.0728	0.0728	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HEC251_ENDOMETRIUM	0.86	1	0.1456	FALSE	416	2512	207	587	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	4	13	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	NO	18996	0	0	1	0.0485	0.1577	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.2062	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	4	13	MT-ND4	2179	chrM:11938:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8772	52	0	0.25	0.0485	0.1577	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.25	0.2062	FALSE	231	215	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND6--MT-TE	3	17	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.2063	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC251_ENDOMETRIUM	1	1	0.2427	FALSE	499	1288	110	792	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	16	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	19018	0	0	1	0.0364	0.1941	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.2305	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	16	MT-ND4	2250	chrM:12009:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	2905	2	0.01	0.9	0.0364	0.1941	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0.01	0.9	0.2305	FALSE	216	209	16	281	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0849	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC251_ENDOMETRIUM	1	1	0.0849	FALSE	462	80	0	856	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	NRIP1--AF127936.7	6	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.47	1	0.0728	0.0243	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC251_ENDOMETRIUM	0.47	1	0.0971	FALSE	292	1546	117	613	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	13	MT-ND4	1571	chrM:11330:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	NO	21229	0	0	1	0.0364	0.1577	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.1941	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	13	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	19114	0	0	1	0.0364	0.1577	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.1941	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND6--MT-TE	4	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0485	0.1092	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC251_ENDOMETRIUM	0.93	1	0.1577	FALSE	499	1288	110	792	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	SLC1A5--MT-ND4L	6	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	455	0	0.02	1	0.0728	0.0121	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	0.02	1	0.0849	FALSE	0	0	0	189	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	6	0	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0728	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.0728	FALSE	231	204	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	12	MT-ND4	1984	chrM:11743:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18179	52	0	0.22	0.0364	0.1456	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.22	0.182	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	5	4	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19303	0	0	1	0.0607	0.0485	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.1092	FALSE	231	205	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	12	MT-ND4	2278	chrM:12037:+	MT-ATP8	5523	chrM:8510:+	INCL_NON_REF_SPLICE	YES	128	1838	0.1	0.01	0.0364	0.1456	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0.01	0.1	0.182	FALSE	216	209	16	281	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	6	0	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0728	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.0728	FALSE	230	193	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	6	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0728	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.0728	FALSE	231	204	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	4	8	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	21228	0	0	1	0.0485	0.0971	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.1456	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	4	8	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	19252	868	0	0.01	0.0485	0.0971	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.01	0.1456	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	6	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0728	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.0728	FALSE	231	205	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	PAWR--RP1-78O14.1	4	8	PAWR	15902	chr12:79986391:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	104	0	0.1	1	0.0485	0.0971	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	HEC251_ENDOMETRIUM	0.1	1	0.1456	FALSE	3	4	0	12	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	11	MT-ND4	1759	chrM:11518:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	18967	0	0	1	0.0364	0.1335	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.1699	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	C15orf57--CBX3	4	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	25	27	0.26	0.25	0.0485	0.0607	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEC251_ENDOMETRIUM	0.25	0.26	0.1092	TRUE	267	562	48	632	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	9	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22033	52	0	0.19	0.0364	0.1092	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.19	0.1456	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	RECQL5--H3F3B	1	17	RECQL5	9958	chr17:73646597:-	H3F3B	29028	chr17:73775265:-	ONLY_REF_SPLICE	YES	57	666	0.24	0.03	0.0121	0.2063	RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-,H3F3B->H3_histone,_family_3B_(H3.3B),chr17:73772515-73781974:-	HEC251_ENDOMETRIUM	0.03	0.24	0.2184	TRUE	0	0	0	1	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	5	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.0607	FALSE	231	204	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	8	MT-ND4	1523	chrM:11282:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	22613	0	0	1	0.0364	0.0971	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.1335	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	5	0	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.0607	FALSE	231	205	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	8	MT-ND4	1783	chrM:11542:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	19365	564	0	0.02	0.0364	0.0971	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.02	0.1335	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	5	0	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.0607	FALSE	231	204	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC251_ENDOMETRIUM	1	1	0.0607	FALSE	499	1288	110	792	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	FAM49B--ASAP1	4	3	FAM49B	2813	chr8:130983189:-	ASAP1	54362	chr8:131149284:-	ONLY_REF_SPLICE	YES	22	35	0.24	0.17	0.0485	0.0364	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[34978],FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-	HEC251_ENDOMETRIUM	0.17	0.24	0.0849	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	7	MT-ND4	1453	chrM:11212:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	20691	0	0	1	0.0364	0.0849	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.1213	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	7	MT-ND4	1534	chrM:11293:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	22749	194	0	0.05	0.0364	0.0849	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.05	0.1213	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	7	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	20782	0	0	1	0.0364	0.0849	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.1213	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	7	MT-ND4	1447	chrM:11206:+	MT-ATP8	5436	chrM:8423:+	INCL_NON_REF_SPLICE	YES	20857	0	0	1	0.0364	0.0849	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.1213	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	7	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	20524	0	0	1	0.0364	0.0849	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.1213	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	6	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	19079	1842	0	0	0.0364	0.0728	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0	0.1092	FALSE	231	217	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND6--MT-TE	3	6	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.0728	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC251_ENDOMETRIUM	1	1	0.1092	FALSE	499	1288	110	792	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	22	0.71	0.19	0.0485	0.0121	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEC251_ENDOMETRIUM	0.19	0.71	0.0606	FALSE	16	356	14	466	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	RP11-15B17.1--MT-ATP8	4	1	RP11-15B17.1	1242	chr4:100871404:+	MT-ATP8	12238	chrM:8427:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0.0121	RP11-15B17.1->chr4:100871163-101116256:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.0606	FALSE	0	0	0	5	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	4	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.0485	FALSE	231	204	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	4	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	19312	0	0	1	0.0364	0.0485	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.0849	FALSE	231	205	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	4	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	20422	0	0	1	0.0364	0.0485	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	1	0.0849	FALSE	231	216	16	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HEC251_ENDOMETRIUM	1	1	0.0485	TRUE	0	0	0	434	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	3	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	20094	1624	0	0	0.0364	0.0364	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0	0.0728	FALSE	231	205	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	3	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19325	52	0	0.1	0.0364	0.0364	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	0	0.1	0.0728	FALSE	231	205	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	KDM2A--RHOD	3	2	KDM2A	9220	chr11:66975159:+	RHOD	35271	chr11:66833367:+	ONLY_REF_SPLICE	YES	32	147	0.14	0.03	0.0364	0.0243	YOSHIHARA_TCGA_num_samples[BRCA:2|LUSC:1],LOCAL_REARRANGEMENT:+:[47256],KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A,RHOD->chr11:66824289-66839484:+,ras_homolog_family_member_D	HEC251_ENDOMETRIUM	0.03	0.14	0.0607	TRUE	0	0	0	1	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	INO80B--WDR54	3	1	INO80B	1152	chr2:74682301:+	WDR54	12901	chr2:74652586:+	INCL_NON_REF_SPLICE	YES	10	37	0.29	0.1	0.0364	0.0121	LOCAL_REARRANGEMENT:+:[29268],INO80B->INO80_complex_subunit_B,chr2:74682150-74688011:+,WDR54->WD_repeat_domain_54,chr2:74648805-74652882:+	HEC251_ENDOMETRIUM	0.1	0.29	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0.0121	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC251_ENDOMETRIUM	1	1	0.0485	FALSE	467	2173	244	435	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0.0121	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC251_ENDOMETRIUM	1	1	0.0485	FALSE	515	4851	409	746	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	RPSAP52--HMGA2	3	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	2	732	0.67	0.01	0.0364	0.0121	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HEC251_ENDOMETRIUM	0.01	0.67	0.0485	FALSE	0	59	0	125	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	SNX9--GTF2H5	3	1	SNX9	9237	chr6:158331057:+	GTF2H5	26429	chr6:158613009:+	ONLY_REF_SPLICE	YES	47	106	0.08	0.04	0.0364	0.0121	SNX9->chr6:158244296-158366109:+,sorting_nexin_9,GTF2H5->chr6:158589384-158620376:+,general_transcription_factor_IIH_subunit_5	HEC251_ENDOMETRIUM	0.04	0.08	0.0485	TRUE	0	0	0	1	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	KDM2A--RHOD	3	0	KDM2A	2906	chr11:66888829:+	RHOD	35271	chr11:66833367:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	YOSHIHARA_TCGA_num_samples[BRCA:2|LUSC:1],LOCAL_REARRANGEMENT:+:[47256],KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A,RHOD->chr11:66824289-66839484:+,ras_homolog_family_member_D	HEC251_ENDOMETRIUM	1	1	0.0364	TRUE	0	5	0	1	5	TRUE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	0	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.0364	FALSE	231	204	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.0364	FALSE	230	198	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	0	MT-ND4	1266	chrM:11025:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.0364	FALSE	231	205	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	0	MT-ND4	1170	chrM:10929:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.0364	FALSE	230	193	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	0	MT-ND4	1180	chrM:10939:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.0364	FALSE	230	193	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ATP8	3	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC251_ENDOMETRIUM	1	1	0.0364	FALSE	231	204	14	283	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	1	1	0.0364	FALSE	344	821	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	3	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	1	1	0.0364	FALSE	344	821	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	3	0	MT-ND4	1047	chrM:10806:+	MT-ND4L	5653	chrM:10744:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	1	1	0.0364	FALSE	344	821	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC251_ENDOMETRIUM	1	1	0.0364	FALSE	344	821	44	306	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	48	0	0.08	1	0.0243	0.0243	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC251_ENDOMETRIUM	0.08	1	0.0486	FALSE	125	705	46	456	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	PPFIBP1--ARNTL2	2	1	PPFIBP1	4200	chr12:27731172:+	ARNTL2	48639	chr12:27538414:+	ONLY_REF_SPLICE	YES	129	18	0.02	0.14	0.0243	0.0121	PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,ARNTL2->aryl_hydrocarbon_receptor_nuclear_translocator_like_2,chr12:27485787-27576241:+	HEC251_ENDOMETRIUM	0.02	0.14	0.0364	TRUE	0	0	0	1	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	AIFM3--SNAP29	2	0	AIFM3	3838	chr22:21322263:+	SNAP29	19009	chr22:21235337:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	LOCAL_REARRANGEMENT:+:[73890],AIFM3->apoptosis_inducing_factor,_mitochondria_associated_3,chr22:21319396-21335649:+,SNAP29->chr22:21213271-21245506:+,synaptosome_associated_protein_29kDa	HEC251_ENDOMETRIUM	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	ALDH1L2--PHF5A	2	0	ALDH1L2	12874	chr12:105445868:-	PHF5A	34811	chr22:41856491:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	ALDH1L2->aldehyde_dehydrogenase_1_family_member_L2,chr12:105413568-105478355:-,PHF5A->PHD_finger_protein_5A,chr22:41855721-41864729:-	HEC251_ENDOMETRIUM	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	CPSF6--IVNS1ABP	2	0	CPSF6	11046	chr12:69656342:+	IVNS1ABP	26367	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=2},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	HEC251_ENDOMETRIUM	1	1	0.0243	TRUE	0	0	0	3	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC251_ENDOMETRIUM	1	1	0.0243	FALSE	7	44	2	41	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	RPS5--ZFYVE20	2	0	RPS5	5815	chr19:58905962:+	ZFYVE20	11494	chr3:15137795:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	RPS5->chr19:58897767-58906173:+,ribosomal_protein_S5,ZFYVE20->chr3:15111580-15140670:-	HEC251_ENDOMETRIUM	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	SCARB1--UBC	2	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	HEC251_ENDOMETRIUM	1	1	0.0243	TRUE	55	66	6	101	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	APC--PIK3R1	1	2	APC	4114	chr5:112090722:+	PIK3R1	39496	chr5:67569218:+	ONLY_REF_SPLICE	YES	16	14	0.16	0.18	0.0121	0.0243	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,PIK3R1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:67511548-67597649:+,phosphoinositide-3-kinase_regulatory_subunit_1	HEC251_ENDOMETRIUM	0.16	0.18	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000996
HEC251_ENDOMETRIUM	ATP11A--LMNA	1	1	ATP11A	7912	chr13:113460607:+	LMNA	60924	chr1:156104596:+	ONLY_REF_SPLICE	YES	76	832	0.03	0	0.0121	0.0121	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,LMNA->chr1:156052364-156109880:+,lamin_A/C	HEC251_ENDOMETRIUM	0	0.03	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	15	203	0.12	0.01	0.0121	0.0121	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	HEC251_ENDOMETRIUM	0.01	0.12	0.0242	FALSE	118	557	29	88	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	DNAJB11--IVNS1ABP	1	1	DNAJB11	6385	chr3:186295589:+	IVNS1ABP	25077	chr1:185274775:-	ONLY_REF_SPLICE	YES	1005	843	0	0	0.0121	0.0121	{Klijn_CCL:Sarcomatoid=1},DNAJB11->DnaJ_heat_shock_protein_family_(Hsp40)_member_B11,chr3:186285192-186315061:+,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	HEC251_ENDOMETRIUM	0	0	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000996
HEC251_ENDOMETRIUM	INO80B--WDR54	1	1	INO80B	1274	chr2:74682423:+	WDR54	13082	chr2:74652767:+	ONLY_REF_SPLICE	YES	11	9	0.15	0.18	0.0121	0.0121	LOCAL_REARRANGEMENT:+:[29268],INO80B->INO80_complex_subunit_B,chr2:74682150-74688011:+,WDR54->WD_repeat_domain_54,chr2:74648805-74652882:+	HEC251_ENDOMETRIUM	0.15	0.18	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000996
SKES1_BONE	EWSR1--FLI1	364	137	EWSR1	11554	chr22:29683123:+	FLI1	35098	chr11:128651853:+	ONLY_REF_SPLICE	YES	394	0	0.56	1	3.4116	1.284	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKES1_BONE	0.56	1	4.6956	TRUE	0	0	0	5	0	TRUE	ACH-000087
SKES1_BONE	ARID1A--NUDC	327	126	ARID1A	7728	chr1:27059283:+	NUDC	32665	chr1:27267948:+	ONLY_REF_SPLICE	YES	135	604	0.77	0.43	3.0648	1.1809	ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,NUDC->chr1:27226729-27273353:+,nudC_nuclear_distribution_protein	SKES1_BONE	0.43	0.77	4.2457	TRUE	0	1	0	1	1	TRUE	ACH-000087
SKES1_BONE	SMCO4--EWSR1	157	38	SMCO4	1233	chr11:93276442:-	EWSR1	24309	chr22:29688126:+	ONLY_REF_SPLICE	YES	5	189	0.97	0.51	1.4715	0.3562	SMCO4->chr11:93211638-93276674:-,single-pass_membrane_protein_with_coiled-coil_domains_4,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	SKES1_BONE	0.51	0.97	1.8277	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	TIMM23B--LINC00843	100	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9373	0.1687	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKES1_BONE	0.99	1	1.106	TRUE	508	994	45	981	0	FALSE	ACH-000087
SKES1_BONE	RP11-680G10.1--GSE1	81	20	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	17	1	0.86	0.7592	0.1875	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKES1_BONE	0.86	1	0.9467	TRUE	458	1351	185	561	0	FALSE	ACH-000087
SKES1_BONE	ZNF654--HMGB2	83	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7779	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKES1_BONE	1	1	0.7779	TRUE	0	0	0	518	0	FALSE	ACH-000087
SKES1_BONE	PCYT1A--CSNK2A2	68	35	PCYT1A	8116	chr3:195974238:-	CSNK2A2	30250	chr16:58201699:-	ONLY_REF_SPLICE	YES	47	36	0.69	0.74	0.6373	0.328	PCYT1A->chr3:195941093-196014828:-,phosphate_cytidylyltransferase_1,_choline,_alpha,CSNK2A2->casein_kinase_2_alpha_2,chr16:58191811-58231824:-	SKES1_BONE	0.69	0.74	0.9653	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	ERP44--RP11-218I7.2	67	11	ERP44	12249	chr9:102747249:-	RP11-218I7.2	20934	chr9:6066365:+	ONLY_REF_SPLICE	YES	62	0	0.56	1	0.628	0.1031	ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44,RP11-218I7.2->chr9:6047360-6066714:+	SKES1_BONE	0.56	1	0.7311	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	TMEM245--AAED1	63	6	TMEM245	1611	chr9:111881615:-	AAED1	30156	chr9:99417055:-	ONLY_REF_SPLICE	YES	28	1	0.71	0.99	0.5905	0.0562	TMEM245->chr9:111777432-111882225:-,transmembrane_protein_245,AAED1->AhpC/TSA_antioxidant_enzyme_domain_containing_1,chr9:99401859-99417585:-	SKES1_BONE	0.71	0.99	0.6467	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	TIMM23--RP11-464F9.1	53	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	213	3	0.21	0.95	0.4967	0.0187	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKES1_BONE	0.21	0.95	0.5154	TRUE	519	3926	326	965	0	FALSE	ACH-000087
SKES1_BONE	RHOA--CCR1	46	16	RHOA	2179	chr3:49449253:-	CCR1	14825	chr3:46245815:-	ONLY_REF_SPLICE	YES	913	0	0.06	1	0.4311	0.15	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,CCR1->C-C_motif_chemokine_receptor_1,Oncogene{Bushman},chr3:46243200-46249887:-	SKES1_BONE	0.06	1	0.5811	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	RP11-680G10.1--GSE1	43	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	52	1	0.5	0.403	0.0844	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKES1_BONE	0.5	1	0.4874	TRUE	465	1949	224	605	0	FALSE	ACH-000087
SKES1_BONE	SMCO4--EWSR1	23	42	SMCO4	1233	chr11:93276442:-	EWSR1	23737	chr22:29687554:+	ONLY_REF_SPLICE	YES	5	188	0.93	0.26	0.2156	0.3936	SMCO4->chr11:93211638-93276674:-,single-pass_membrane_protein_with_coiled-coil_domains_4,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	SKES1_BONE	0.26	0.93	0.6092	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	MT-RNR2--MT-TV	23	19	MT-RNR2	1060	chrM:1730:+	MT-TV	5583	chrM:1625:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2156	0.1781	LOCAL_REARRANGEMENT:+:[1],MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA,MT-TV->chrM:1602-1670:+,mitochondrially_encoded_tRNA_valine	SKES1_BONE	1	1	0.3937	FALSE	56	134	3	5	0	FALSE	ACH-000087
SKES1_BONE	ZFAND5--RP11-3L8.3	22	15	ZFAND5	1552	chr9:74979612:-	RP11-3L8.3	15834	chr9:12790764:-	ONLY_REF_SPLICE	YES	31	0	0.54	1	0.2062	0.1406	ZFAND5->chr9:74966341-74980163:-,zinc_finger_AN1-type_containing_5,RP11-3L8.3->chr9:12700100-12814344:-	SKES1_BONE	0.54	1	0.3468	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	NPM1P24--SET	25	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	41	2373	0.39	0.01	0.2343	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKES1_BONE	0.01	0.39	0.2437	TRUE	0	0	0	434	0	FALSE	ACH-000087
SKES1_BONE	MT-ND6--MT-TE	21	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1968	0.0562	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKES1_BONE	1	1	0.253	FALSE	499	1288	110	792	0	FALSE	ACH-000087
SKES1_BONE	OR51S1--TP53I11	22	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2062	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SKES1_BONE	1	1	0.2062	TRUE	402	216	10	229	0	FALSE	ACH-000087
SKES1_BONE	PGM5--MUSK	19	4	PGM5	10680	chr9:71007389:+	MUSK	47766	chr9:113562586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1781	0.0375	PGM5->chr9:70943224-71145977:+,phosphoglucomutase_5,MUSK->chr9:113431051-113563859:+,muscle_associated_receptor_tyrosine_kinase	SKES1_BONE	1	1	0.2156	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	EHMT1--RP11-561O23.8	16	6	EHMT1	6348	chr9:140622981:+	RP11-561O23.8	51187	chr9:70843569:+	INCL_NON_REF_SPLICE	YES	59	0	0.27	1	0.15	0.0562	EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,RP11-561O23.8->chr9:70843567-70844228:+	SKES1_BONE	0.27	1	0.2062	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	DIP2B--ASIC1	16	4	DIP2B	1256	chr12:50899023:+	ASIC1	55420	chr12:50470996:+	ONLY_REF_SPLICE	YES	27	18	0.43	0.53	0.15	0.0375	DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B,ASIC1->acid_sensing_ion_channel_subunit_1,chr12:50451331-50477394:+	SKES1_BONE	0.43	0.53	0.1875	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	SMCO4--EWSR1	5	42	SMCO4	1233	chr11:93276442:-	EWSR1	23734	chr22:29687551:+	ONLY_REF_SPLICE	YES	5	197	0.9	0.19	0.0469	0.3936	SMCO4->chr11:93211638-93276674:-,single-pass_membrane_protein_with_coiled-coil_domains_4,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	SKES1_BONE	0.19	0.9	0.4405	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	MT-TA--MT-TC	15	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1406	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKES1_BONE	1	1	0.15	FALSE	462	80	0	856	0	FALSE	ACH-000087
SKES1_BONE	CDK14--GTPBP10	14	4	CDK14	25131	chr7:90708795:+	GTPBP10	48444	chr7:90003616:+	ONLY_REF_SPLICE	YES	56	91	0.24	0.17	0.1312	0.0375	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_REARRANGEMENT:+:[74969],CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	SKES1_BONE	0.17	0.24	0.1687	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	MT-ND6--MT-TE	12	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1125	0.1125	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKES1_BONE	1	1	0.225	FALSE	499	1288	110	792	0	FALSE	ACH-000087
SKES1_BONE	EHMT1--RP11-561O23.8	14	1	EHMT1	6348	chr9:140622981:+	RP11-561O23.8	51588	chr9:70843970:+	ONLY_REF_SPLICE	YES	59	1	0.2	0.94	0.1312	0.0094	EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,RP11-561O23.8->chr9:70843567-70844228:+	SKES1_BONE	0.2	0.94	0.1406	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	AKAP2--LPAR1	12	7	AKAP2	8840	chr9:112811135:+	LPAR1	30380	chr9:113735838:-	ONLY_REF_SPLICE	YES	8	0	0.7	1	0.1125	0.0656	AKAP2->A-kinase_anchoring_protein_2,chr9:112542769-112934792:+,LPAR1->Oncogene{Bushman},chr9:113635543-113800981:-,lysophosphatidic_acid_receptor_1	SKES1_BONE	0.7	1	0.1781	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	AC027119.1--AC026167.1	12	2	AC027119.1	1674	chr3:6005202:+	AC026167.1	6915	chr3:6400588:+	ONLY_REF_SPLICE	YES	3	0	0.82	1	0.1125	0.0187	NEIGHBORS[24364],AC027119.1->chr3:6004529-6165807:+,AC026167.1->chr3:6190171-6407572:+	SKES1_BONE	0.82	1	0.1312	FALSE	1	37	1	9	0	FALSE	ACH-000087
SKES1_BONE	MT-ND6--MT-TE	11	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1031	0.0562	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKES1_BONE	1	1	0.1593	FALSE	499	1288	110	792	0	FALSE	ACH-000087
SKES1_BONE	ZFAND5--RP11-3L8.3	12	0	ZFAND5	1552	chr9:74979612:-	RP11-3L8.3	16980	chr9:12759623:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1125	0	ZFAND5->chr9:74966341-74980163:-,zinc_finger_AN1-type_containing_5,RP11-3L8.3->chr9:12700100-12814344:-	SKES1_BONE	1	1	0.1125	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	NRG1-IT1--NRG1-IT2	11	1	NRG1-IT1	1146	chr8:31883880:+	NRG1-IT2	15465	chr8:32144617:+	ONLY_REF_SPLICE	YES	4	1	0.75	0.92	0.1031	0.0094	NEIGHBORS[31907],NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+,NRG1-IT2->chr8:32028898-32145082:+	SKES1_BONE	0.75	0.92	0.1125	FALSE	0	0	0	3	0	FALSE	ACH-000087
SKES1_BONE	NRG1-IT1--NRG1-IT2	10	4	NRG1-IT1	2253	chr8:31887001:+	NRG1-IT2	15465	chr8:32144617:+	ONLY_REF_SPLICE	YES	5	1	0.74	0.93	0.0937	0.0375	NEIGHBORS[31907],NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+,NRG1-IT2->chr8:32028898-32145082:+	SKES1_BONE	0.74	0.93	0.1312	FALSE	3	1	0	5	0	FALSE	ACH-000087
SKES1_BONE	AC027119.1--AC026167.1	10	3	AC027119.1	2872	chr3:6165860:+	AC026167.1	6915	chr3:6400588:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0937	0.0281	NEIGHBORS[24364],AC027119.1->chr3:6004529-6165807:+,AC026167.1->chr3:6190171-6407572:+	SKES1_BONE	1	1	0.1218	FALSE	0	0	0	2	0	FALSE	ACH-000087
SKES1_BONE	MT-ND6--MT-TE	5	16	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0.15	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKES1_BONE	1	1	0.1969	FALSE	499	1288	110	792	0	FALSE	ACH-000087
SKES1_BONE	C15orf57--CBX3	7	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	28	33	0.28	0.25	0.0656	0.0375	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKES1_BONE	0.25	0.28	0.1031	TRUE	267	562	48	632	0	FALSE	ACH-000087
SKES1_BONE	HSPBP1--GRK5	8	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.075	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SKES1_BONE	1	1	0.075	TRUE	1	39	0	134	39	FALSE	ACH-000087
SKES1_BONE	GPR144--SMARCA2	7	2	GPR144	2579	chr9:127215001:+	SMARCA2	41931	chr9:2096657:+	ONLY_REF_SPLICE	YES	1	17	0.9	0.35	0.0656	0.0187	GPR144->chr9:127213423-127239379:+,SMARCA2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_2,chr9:2015342-2193624:+	SKES1_BONE	0.35	0.9	0.0843	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	MT-ND6--MT-TE	5	10	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0.0937	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKES1_BONE	1	1	0.1406	FALSE	499	1288	110	792	0	FALSE	ACH-000087
SKES1_BONE	NPM1P24--SET	7	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	41	2325	0.16	0	0.0656	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKES1_BONE	0	0.16	0.075	FALSE	0	0	0	434	0	FALSE	ACH-000087
SKES1_BONE	NPM1P24--SET	7	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	41	2126	0.16	0	0.0656	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKES1_BONE	0	0.16	0.075	FALSE	0	0	0	434	0	FALSE	ACH-000087
SKES1_BONE	MT-ND6--MT-TE	4	9	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0.0844	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKES1_BONE	1	1	0.1219	FALSE	499	1288	110	792	0	FALSE	ACH-000087
SKES1_BONE	NPM1P24--SET	6	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	41	2114	0.15	0	0.0562	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKES1_BONE	0	0.15	0.0656	FALSE	0	0	0	434	0	FALSE	ACH-000087
SKES1_BONE	RP11-509J21.1--DMRT1	4	9	RP11-509J21.1	5394	chr9:3606738:+	DMRT1	16414	chr9:916763:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0375	0.0844	RP11-509J21.1->chr9:3526723-3671646:+,DMRT1->chr9:841690-969090:+,doublesex_and_mab-3_related_transcription_factor_1	SKES1_BONE	1	1	0.1219	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	TRMT10B--GARNL3	6	1	TRMT10B	7345	chr9:37770736:+	GARNL3	19571	chr9:130027231:+	ONLY_REF_SPLICE	YES	5	13	0.58	0.35	0.0562	0.0094	TRMT10B->chr9:37753804-37778969:+,tRNA_methyltransferase_10B,GARNL3->GTPase_activating_Rap/RanGAP_domain_like_3,chr9:129986544-130155939:+	SKES1_BONE	0.35	0.58	0.0656	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	DFNB31--PGM5-AS1	5	0	DFNB31	2267	chr9:117266464:-	PGM5-AS1	20501	chr9:70970521:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0469	0	DFNB31->chr9:117164360-117267730:-,deafness,_autosomal_recessive_31,PGM5-AS1->PGM5_antisense_RNA_1,chr9:70970105-70972768:-	SKES1_BONE	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	PAQR5--GLCE	5	0	PAQR5	1110	chr15:69591395:+	GLCE	27130	chr15:69553426:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0469	0	LOCAL_REARRANGEMENT:+:[26730],PAQR5->chr15:69591286-69700119:+,progestin_and_adipoQ_receptor_family_member_5,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	SKES1_BONE	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	CPSF6--CHMP1A	4	2	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	316	162	0.02	0.04	0.0375	0.0187	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SKES1_BONE	0.02	0.04	0.0562	TRUE	95	74	6	34	0	FALSE	ACH-000087
SKES1_BONE	MT-ND2--MT-TM	4	1	MT-ND2	1021	chrM:4490:+	MT-TM	5049	chrM:4408:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0375	0.0094	LOCAL_REARRANGEMENT:+:[1],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-TM->chrM:4402-4469:+,mitochondrially_encoded_tRNA_methionine	SKES1_BONE	1	1	0.0469	FALSE	74	23	0	9	0	FALSE	ACH-000087
SKES1_BONE	RP11-509J21.1--DMRT1	2	9	RP11-509J21.1	4348	chr9:3602584:+	DMRT1	16414	chr9:916763:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0.0844	RP11-509J21.1->chr9:3526723-3671646:+,DMRT1->chr9:841690-969090:+,doublesex_and_mab-3_related_transcription_factor_1	SKES1_BONE	1	1	0.1031	TRUE	0	1	0	1	1	TRUE	ACH-000087
SKES1_BONE	NRG1-IT1--NRG1-IT2	3	4	NRG1-IT1	3227	chr8:31887975:+	NRG1-IT2	15465	chr8:32144617:+	ONLY_REF_SPLICE	YES	5	1	0.58	0.88	0.0281	0.0375	NEIGHBORS[31907],NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+,NRG1-IT2->chr8:32028898-32145082:+	SKES1_BONE	0.58	0.88	0.0656	FALSE	3	1	0	5	0	FALSE	ACH-000087
SKES1_BONE	RCC1--HMGB1	4	0	RCC1	2175	chr1:28834672:+	HMGB1	23625	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0375	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	SKES1_BONE	1	1	0.0375	TRUE	0	6	0	3	4	TRUE	ACH-000087
SKES1_BONE	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	SKES1_BONE	1	1	0.0375	TRUE	22	156	2	142	0	FALSE	ACH-000087
SKES1_BONE	ZNF738--CHMP1A	4	0	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0375	0	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SKES1_BONE	1	1	0.0375	TRUE	1	20	1	28	3	FALSE	ACH-000087
SKES1_BONE	C10orf112--PLXDC2	3	1	C10orf112	32754	chr10:20079115:+	PLXDC2	37923	chr10:20290704:+	INCL_NON_REF_SPLICE	YES	0	53	1	0.07	0.0281	0.0094	NEIGHBORS[25838],C10orf112->chr10:19492779-20079330:+,PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2	SKES1_BONE	0.07	1	0.0375	FALSE	73	74	3	10	0	FALSE	ACH-000087
SKES1_BONE	LINC01036--LINC01037	3	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0.0094	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SKES1_BONE	1	1	0.0375	FALSE	0	24	0	62	0	FALSE	ACH-000087
SKES1_BONE	MT-TA--MT-TC	3	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKES1_BONE	1	1	0.0375	FALSE	462	80	0	856	0	FALSE	ACH-000087
SKES1_BONE	NPM1--DOCK2	3	1	NPM1	4640	chr5:170818803:+	DOCK2	26854	chr5:169125378:+	ONLY_REF_SPLICE	YES	2912	2	0	0.67	0.0281	0.0094	NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),DOCK2->chr5:169064251-169510386:+,dedicator_of_cytokinesis_2	SKES1_BONE	0	0.67	0.0375	FALSE	0	0	0	1	0	FALSE	ACH-000087
SKES1_BONE	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	41	2086	0.09	0	0.0281	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKES1_BONE	0	0.09	0.0375	FALSE	0	0	0	434	0	FALSE	ACH-000087
SKES1_BONE	NPM1P24--SET	3	1	NPM1P24	1533	chr10:74677760:-	SET	12307	chr9:131456202:+	INCL_NON_REF_SPLICE	NO	41	2127	0.09	0	0.0281	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKES1_BONE	0	0.09	0.0375	FALSE	0	0	0	434	0	FALSE	ACH-000087
SKES1_BONE	RP11-120D5.1--MID1	3	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	4	0.44	0.5	0.0281	0.0094	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKES1_BONE	0.44	0.5	0.0375	FALSE	0	48	1	163	0	FALSE	ACH-000087
SKES1_BONE	RP11-319G9.5--WWOX	3	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	58	1	0.06	0.0281	0.0094	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	SKES1_BONE	0.06	1	0.0375	FALSE	154	425	28	76	0	FALSE	ACH-000087
SKES1_BONE	RP11-509J21.1--DMRT1	2	5	RP11-509J21.1	2190	chr9:3546912:+	DMRT1	16414	chr9:916763:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0.0469	RP11-509J21.1->chr9:3526723-3671646:+,DMRT1->chr9:841690-969090:+,doublesex_and_mab-3_related_transcription_factor_1	SKES1_BONE	1	1	0.0656	TRUE	0	1	0	1	1	TRUE	ACH-000087
SKES1_BONE	CDK14--GTPBP10	2	4	CDK14	24082	chr7:90675275:+	GTPBP10	48444	chr7:90003616:+	ONLY_REF_SPLICE	YES	55	91	0.1	0.06	0.0187	0.0375	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_REARRANGEMENT:+:[74969],CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	SKES1_BONE	0.06	0.1	0.0562	TRUE	0	0	0	1	0	FALSE	ACH-000087
SKES1_BONE	CHD8--HNRNPC	3	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	SKES1_BONE	1	1	0.0281	TRUE	2	8	0	24	0	FALSE	ACH-000087
SKES1_BONE	LINC01036--LINC01037	3	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SKES1_BONE	1	1	0.0281	FALSE	0	26	0	50	0	FALSE	ACH-000087
SKES1_BONE	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKES1_BONE	1	1	0.0281	FALSE	499	1288	110	792	0	FALSE	ACH-000087
SKES1_BONE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKES1_BONE	1	1	0.0281	TRUE	0	0	0	434	0	FALSE	ACH-000087
SKES1_BONE	RP11-123O10.4--GRIP1	3	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKES1_BONE	1	1	0.0281	FALSE	416	2512	207	587	0	FALSE	ACH-000087
SKES1_BONE	RP11-264K23.1--TMEM229A	3	0	RP11-264K23.1	1256	chr7:123927343:-	TMEM229A	6841	chr7:123672333:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0	RP11-264K23.1->chr7:123914733-123927598:-,TMEM229A->chr7:123670973-123673523:-,transmembrane_protein_229A	SKES1_BONE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	RP11-264K23.1--TMEM229A	3	0	RP11-264K23.1	1256	chr7:123927343:-	TMEM229A	6441	chr7:123672733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0	RP11-264K23.1->chr7:123914733-123927598:-,TMEM229A->chr7:123670973-123673523:-,transmembrane_protein_229A	SKES1_BONE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	AKAP2--LPAR1	1	7	AKAP2	12523	chr9:112890292:+	LPAR1	30380	chr9:113735838:-	ONLY_REF_SPLICE	NO	8	0	0.5	1	0.0094	0.0656	AKAP2->A-kinase_anchoring_protein_2,chr9:112542769-112934792:+,LPAR1->Oncogene{Bushman},chr9:113635543-113800981:-,lysophosphatidic_acid_receptor_1	SKES1_BONE	0.5	1	0.075	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	RP11-509J21.1--DMRT1	1	7	RP11-509J21.1	3286	chr9:3568889:+	DMRT1	16414	chr9:916763:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0094	0.0656	RP11-509J21.1->chr9:3526723-3671646:+,DMRT1->chr9:841690-969090:+,doublesex_and_mab-3_related_transcription_factor_1	SKES1_BONE	1	1	0.075	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	AKAP2--LPAR1	1	6	AKAP2	8840	chr9:112811135:+	LPAR1	31458	chr9:113734500:-	ONLY_REF_SPLICE	YES	8	8	0.47	0.47	0.0094	0.0562	AKAP2->A-kinase_anchoring_protein_2,chr9:112542769-112934792:+,LPAR1->Oncogene{Bushman},chr9:113635543-113800981:-,lysophosphatidic_acid_receptor_1	SKES1_BONE	0.47	0.47	0.0656	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	LYRM4--RPP40	2	1	LYRM4	4789	chr6:5216851:-	RPP40	24922	chr6:5002479:-	ONLY_REF_SPLICE	YES	125	68	0.02	0.04	0.0187	0.0094	NEIGHBORS[98530],LYRM4->LYR_motif_containing_4,chr6:5102827-5261172:-,RPP40->chr6:4994966-5004297:-,ribonuclease_P/MRP_subunit_p40	SKES1_BONE	0.02	0.04	0.0281	FALSE	0	3	0	5	0	FALSE	ACH-000087
SKES1_BONE	RP11-141M1.3--STARD13	2	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	148	1	0.02	0.0187	0.0094	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKES1_BONE	0.02	1	0.0281	FALSE	141	264	50	91	0	FALSE	ACH-000087
SKES1_BONE	CPSF6--C9orf3	2	0	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SKES1_BONE	1	1	0.0187	TRUE	53	99	2	44	0	FALSE	ACH-000087
SKES1_BONE	CPSF6--NREP	2	0	CPSF6	11046	chr12:69656342:+	NREP	24401	chr5:111092876:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,NREP->chr5:110998318-111333161:-,neuronal_regeneration_related_protein	SKES1_BONE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	CTD-2541M15.1--USP22	2	0	CTD-2541M15.1	1069	chr8:6565662:-	USP22	16287	chr17:20931987:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	CTD-2541M15.1->chr8:6475996-6565730:-,USP22->chr17:20902910-20947073:-,ubiquitin_specific_peptidase_22	SKES1_BONE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	NDUFA10--LUC7L2	2	0	NDUFA10	12749	chr2:240929491:-	LUC7L2	40001	chr7:139106909:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	NDUFA10->NADH:ubiquinone_oxidoreductase_subunit_A10,chr2:240831867-240964819:-,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	SKES1_BONE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	NRG1-IT1--NRG1-IT2	1	4	NRG1-IT1	6865	chr8:31956317:+	NRG1-IT2	15465	chr8:32144617:+	ONLY_REF_SPLICE	YES	7	1	0.42	0.83	0.0094	0.0375	NEIGHBORS[31907],NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+,NRG1-IT2->chr8:32028898-32145082:+	SKES1_BONE	0.42	0.83	0.0469	FALSE	0	0	0	1	0	FALSE	ACH-000087
SKES1_BONE	RP11-509J21.2--DMRT1	2	0	RP11-509J21.2	1143	chr9:3647477:+	DMRT1	10528	chr9:916763:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	RP11-509J21.2->chr9:3647335-3648338:+,DMRT1->chr9:841690-969090:+,doublesex_and_mab-3_related_transcription_factor_1	SKES1_BONE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	RP11-634B7.4--TRIM58	1	4	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	3	1	0.62	0.0094	0.0375	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	SKES1_BONE	0.62	1	0.0469	TRUE	158	633	76	73	0	FALSE	ACH-000087
SKES1_BONE	CDK14--GTPBP10	1	2	CDK14	25131	chr7:90708795:+	GTPBP10	49497	chr7:90006821:+	ONLY_REF_SPLICE	YES	56	84	0.05	0.03	0.0094	0.0187	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_REARRANGEMENT:+:[74969],CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	SKES1_BONE	0.03	0.05	0.0281	TRUE	0	0	0	1	0	FALSE	ACH-000087
SKES1_BONE	RP13-16H11.2--HOOK1	1	2	RP13-16H11.2	2132	chr10:26957336:-	HOOK1	17698	chr1:60312717:+	ONLY_REF_SPLICE	YES	203	23	0.01	0.12	0.0094	0.0187	RP13-16H11.2->chr10:26953135-26965088:-,HOOK1->chr1:60280458-60342050:+,hook_microtubule-tethering_protein_1	SKES1_BONE	0.01	0.12	0.0281	FALSE	0	0	0	1	0	FALSE	ACH-000087
SKES1_BONE	AC004538.3--PHF14	1	1	AC004538.3	8884	chr7:11288002:+	PHF14	26566	chr7:11030330:+	ONLY_REF_SPLICE	YES	24	274	0.08	0.01	0.0094	0.0094	LOCAL_REARRANGEMENT:+:[12109],AC004538.3->chr7:11221359-11559802:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SKES1_BONE	0.01	0.08	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000087
SKES1_BONE	ACTR2--RAB1A	1	1	ACTR2	2316	chr2:65467096:+	RAB1A	20283	chr2:65331940:-	ONLY_REF_SPLICE	YES	700	275	0	0.01	0.0094	0.0094	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[97647],ACTR2->ARP2_actin-related_protein_2_homolog_(yeast),chr2:65454887-65498387:+,RAB1A->Oncogene{Bushman},RAB1A,_member_RAS_oncogene_family,chr2:65297835-65357240:-	SKES1_BONE	0	0.01	0.0188	FALSE	0	0	0	2	0	FALSE	ACH-000087
SKES1_BONE	ATRX--ABCB7	1	1	ATRX	30147	chrX:76854880:-	ABCB7	52173	chrX:74296489:-	ONLY_REF_SPLICE	NO	95	25	0.02	0.07	0.0094	0.0094	ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,ABCB7->ATP_binding_cassette_subfamily_B_member_7,chrX:74273115-74376567:-	SKES1_BONE	0.02	0.07	0.0188	TRUE	0	0	0	1	0	FALSE	ACH-000087
SKES1_BONE	CPSF1--CNIH4	1	1	CPSF1	5256	chr8:145624169:-	CNIH4	14053	chr1:224544623:+	ONLY_REF_SPLICE	YES	181	0	0.01	1	0.0094	0.0094	CPSF1->chr8:145618444-145634753:-,cleavage_and_polyadenylation_specific_factor_1,CNIH4->chr1:224544552-224567161:+,cornichon_family_AMPA_receptor_auxiliary_protein_4	SKES1_BONE	0.01	1	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000087
SKES1_BONE	KCNQ5-IT1--KCNQ5	1	1	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	NO	0	14	1	0.12	0.0094	0.0094	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	SKES1_BONE	0.12	1	0.0188	FALSE	1	11	0	34	0	FALSE	ACH-000087
SKES1_BONE	PCYT1A--CSNK2A2	1	1	PCYT1A	3973	chr3:195997286:-	CSNK2A2	30250	chr16:58201699:-	ONLY_REF_SPLICE	YES	68	36	0.03	0.05	0.0094	0.0094	PCYT1A->chr3:195941093-196014828:-,phosphate_cytidylyltransferase_1,_choline,_alpha,CSNK2A2->casein_kinase_2_alpha_2,chr16:58191811-58231824:-	SKES1_BONE	0.03	0.05	0.0188	TRUE	0	0	0	1	0	FALSE	ACH-000087
SKES1_BONE	RAF1--ARPC4	1	1	RAF1	1414	chr3:12705312:-	ARPC4	25020	chr3:9839343:+	ONLY_REF_SPLICE	YES	265	45	0.01	0.04	0.0094	0.0094	RAF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},Raf-1_proto-oncogene,_serine/threonine_kinase,chr3:12625100-12705725:-,ARPC4->actin_related_protein_2/3_complex_subunit_4,chr3:9834179-9849410:+	SKES1_BONE	0.01	0.04	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000087
SKES1_BONE	RP1-34H18.1--NAV3	1	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0094	0.0094	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SKES1_BONE	1	1	0.0188	TRUE	254	575	65	124	0	FALSE	ACH-000087
SKES1_BONE	RP11-509J21.1--DMRT1	1	1	RP11-509J21.1	1055	chr9:3526777:+	DMRT1	16414	chr9:916763:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0094	0.0094	RP11-509J21.1->chr9:3526723-3671646:+,DMRT1->chr9:841690-969090:+,doublesex_and_mab-3_related_transcription_factor_1	SKES1_BONE	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000087
SKES1_BONE	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	63	1	0.03	0.0094	0.0094	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKES1_BONE	0.03	1	0.0188	TRUE	64	13	3	59	0	FALSE	ACH-000087
SKES1_BONE	RP13-16H11.2--PGBD2	1	1	RP13-16H11.2	2132	chr10:26957336:-	PGBD2	10012	chr1:249211478:+	ONLY_REF_SPLICE	YES	203	19	0.01	0.1	0.0094	0.0094	RP13-16H11.2->chr10:26953135-26965088:-,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	SKES1_BONE	0.01	0.1	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000087
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	94	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5354	0.2613	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.7967	TRUE	508	994	45	981	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	55	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	104	3	0.37	0.95	0.8984	0.0817	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.95	0.9801	TRUE	519	3926	326	965	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	39	31	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	119	5	0.37	0.93	0.637	0.5064	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.93	1.1434	TRUE	267	562	48	632	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	36	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.588	0.0653	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6533	FALSE	462	80	0	856	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	69	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	40	0	0.64	1	0.049	1.1271	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	1.1761	FALSE	344	827	44	306	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAMSAP2--PTPLAD1	18	8	CAMSAP2	2669	chr1:200730226:+	PTPLAD1	30518	chr15:65844014:+	ONLY_REF_SPLICE	YES	8	56	0.76	0.32	0.294	0.1307	CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+,PTPLAD1->chr15:65822756-65870687:+	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.76	0.4247	TRUE	0	0	0	1	0	TRUE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	13	0	IGH@	97640	chr14:106321054:-	TMSB4X	131816	chrX:12993241:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2123	0	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2123	TRUE	0	0	0	6	0	TRUE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	8	17	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	112	5	0.18	0.83	0.1307	0.2777	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.83	0.4084	TRUE	267	562	48	632	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1797	0.0163	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.196	FALSE	499	1288	110	792	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	31	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.049	0.5064	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.5554	FALSE	344	821	44	306	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--B2M	10	2	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	3351	0	0	1	0.1633	0.0327	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.196	TRUE	0	0	0	28	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	17	MT-ND4	1452	chrM:11211:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	215	0	0.09	1	0.0817	0.2777	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.3594	FALSE	344	827	44	306	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	8	1	IGH@	97649	chr14:106321045:-	TMSB4X	131824	chrX:12993249:+	INCL_NON_REF_SPLICE	YES	7299	0	0	1	0.1307	0.0163	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.147	TRUE	0	0	0	6	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	18	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	112	5	0.16	0.81	0.049	0.294	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.81	0.343	TRUE	267	562	48	632	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0817	0.1633	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.245	FALSE	499	1288	110	792	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	7	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	36	0	0.2	1	0.1143	0.0327	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.147	FALSE	272	151	14	158	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	17	MT-ND4	1152	chrM:10911:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	7	0	0.74	1	0.049	0.2777	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	0.3267	FALSE	344	826	44	306	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0817	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0817	FALSE	462	80	0	856	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0.0817	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1307	FALSE	462	80	0	856	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0653	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0653	FALSE	344	821	44	306	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0.0653	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1143	FALSE	462	80	0	856	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	3	2	IGH@	97868	chr14:106320826:-	TMSB4X	132968	chrX:12994393:+	INCL_NON_REF_SPLICE	YES	6699	146	0	0.03	0.049	0.0327	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0817	FALSE	0	0	0	1	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00158--AP000233.4	3	1	LINC00158	5017	chr21:26793020:-	AP000233.4	12117	chr21:26547759:-	ONLY_REF_SPLICE	YES	65	0	0.06	1	0.049	0.0163	NEIGHBORS[51994],LINC00158->chr21:26758133-26804013:-,long_intergenic_non-protein_coding_RNA_158,AP000233.4->chr21:26541745-26706139:-	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0653	FALSE	0	1	0	4	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.049	FALSE	344	821	44	306	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	3	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.049	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.049	TRUE	477	1352	189	275	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	3	0	SPON2	4412	chr4:1195057:-	CTBP1	23049	chr4:1232125:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.049	0	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.049	TRUE	2	0	0	8	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	12	1	0.2	0.0327	0.0163	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.049	TRUE	465	1949	224	605	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	3	1	0.5	0.0327	0.0163	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.049	FALSE	515	4851	409	746	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COL4A3BP--HMGCR	2	0	COL4A3BP	7481	chr5:74715166:-	HMGCR	43069	chr5:74652168:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_INVERSION:-:+:[6382],COL4A3BP->chr5:74664311-74807963:-,collagen_type_IV_alpha_3_binding_protein,HMGCR->3-hydroxy-3-methylglutaryl-CoA_reductase,Oncogene{Bushman},chr5:74632154-74657929:+	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CREBRF--MIB1	2	0	CREBRF	7949	chr5:172518404:+	MIB1	41752	chr18:19418326:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	CREBRF->CREB3_regulatory_factor,chr5:172483355-172566291:+,MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	TRUE	160	277	29	98	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	2	0	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	TRUE	4	3	0	21	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0327	FALSE	28	14	1	23	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	3	1	0.4	0.0163	0.0163	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.0326	FALSE	467	2173	244	435	0	FALSE	ACH-000106
JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-977B1.7--TGIF2	1	1	RP5-977B1.7	2583	chr20:35199844:-	TGIF2	17191	chr20:35207144:+	ONLY_REF_SPLICE	YES	4	1	0.33	0.67	0.0163	0.0163	LOCAL_INVERSION:-:+:[97],RP5-977B1.7->chr20:35136563-35201794:-,TGIF2->TGFB_induced_factor_homeobox_2,chr20:35201891-35222353:+	JVM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.67	0.0326	TRUE	0	3	0	3	3	TRUE	ACH-000106
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	156	17	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4435	0.1573	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	1.6008	FALSE	462	80	0	856	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	36	125	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3331	1.1566	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	1.4897	FALSE	369	2501	205	193	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	60	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5552	0.1203	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.6755	TRUE	508	994	45	981	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	47	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.4349	0.0093	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.98	1	0.4442	FALSE	499	1288	110	792	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	41	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3794	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.3794	TRUE	519	3926	326	965	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	29	37	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2683	0.3424	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.6107	FALSE	369	2501	205	193	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	ANXA2--NARG2	32	5	ANXA2	15528	chr15:60674541:-	NARG2	33585	chr15:60770268:-	ONLY_REF_SPLICE	YES	3415	21	0.01	0.64	0.2961	0.0463	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.01	0.64	0.3424	TRUE	0	0	0	1	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	31	8	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3	2	0.93	0.95	0.2868	0.074	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.93	0.95	0.3608	FALSE	43	37	8	105	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	16	62	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.148	0.5737	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.7217	FALSE	369	2501	205	193	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	30	5	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4986	9	0.01	0.8	0.2776	0.0463	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.01	0.8	0.3239	FALSE	43	37	8	105	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	27	17	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2498	0.1573	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.4071	FALSE	462	80	0	856	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	9	82	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0833	0.7587	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.842	FALSE	369	2501	205	193	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	24	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2221	0.0093	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.2314	FALSE	462	80	0	856	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	22	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2036	0.074	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.97	1	0.2776	FALSE	499	1288	110	792	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	23	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2128	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.2128	FALSE	351	233	23	137	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	12	40	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.111	0.3701	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.4811	FALSE	369	2501	205	193	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	21	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1943	0.0093	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.2036	FALSE	499	1288	110	792	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MIR205HG--C9orf3	18	11	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	484	528	0.06	0.05	0.1666	0.1018	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.05	0.06	0.2684	TRUE	86	303	14	25	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	6	55	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0.5089	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.5644	FALSE	369	2501	205	193	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	64	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.5922	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.62	FALSE	369	2501	205	193	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	18	2	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6063	41	0	0.33	0.1666	0.0185	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1076_UPPER_AERODIGESTIVE_TRACT	0	0.33	0.1851	FALSE	43	37	8	105	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	61	MT-TA	1051	chrM:5605:-	MT-TN	4091	chrM:5708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.5644	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.5922	FALSE	369	2501	205	193	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	16	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.148	0.0555	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.81	1	0.2035	FALSE	499	1288	110	792	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	15	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	1	0.86	0.95	0.1388	0.037	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.86	0.95	0.1758	FALSE	515	4851	409	746	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	15	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1388	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.1388	FALSE	369	2501	205	193	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	13	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1203	0.0093	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.1296	FALSE	292	1546	117	613	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	13	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1203	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.1203	FALSE	369	2501	205	193	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	7	22	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0648	0.2036	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.2684	FALSE	462	80	0	856	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-494M8.4--OVCH2	11	6	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	3	0	0.85	1	0.1018	0.0555	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.85	1	0.1573	FALSE	32	0	0	22	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	8	9	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.89	0.074	0.0833	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.89	1	0.1573	FALSE	43	37	8	105	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	6	17	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0.1573	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.2128	FALSE	462	80	0	856	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	10	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.44	1	0.0925	0.0093	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.44	1	0.1018	FALSE	125	705	46	456	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	10	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0925	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0925	FALSE	369	2501	205	193	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	8	7	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.75	1	0.074	0.0648	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.75	1	0.1388	FALSE	499	1288	110	792	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-494M8.4--OVCH2	8	7	RP11-494M8.4	10901	chr11:7775931:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0.0648	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.1388	FALSE	16	1	1	11	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	9	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	22	1	0.35	0.0833	0.0278	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.35	1	0.1111	TRUE	465	1949	224	605	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	6	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	57	13	0.23	0.57	0.0555	0.1018	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.23	0.57	0.1573	TRUE	267	562	48	632	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	CTD-2337A12.1--CAST	8	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	505	1	0.02	0.074	0.0093	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.02	1	0.0833	TRUE	347	1186	183	220	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	20	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.1851	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.2129	FALSE	462	80	0	856	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	8	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.074	FALSE	369	2501	205	193	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	8	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.074	FALSE	13	214	14	42	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	7	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0648	0.0278	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0926	FALSE	416	2512	207	587	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	18	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.1666	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.1944	FALSE	462	80	0	856	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-1L12.3--SLC5A12	7	2	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	11	0	0.45	1	0.0648	0.0185	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.45	1	0.0833	TRUE	3	101	0	60	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	6	5	MT-ND5	2303	chrM:13639:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3764	9	0	0.55	0.0555	0.0463	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1076_UPPER_AERODIGESTIVE_TRACT	0	0.55	0.1018	FALSE	43	37	8	105	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	6	3	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0.0278	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0833	FALSE	13	214	14	42	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	5	6	MT-ND5	2290	chrM:13626:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3909	2	0	0.85	0.0463	0.0555	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1076_UPPER_AERODIGESTIVE_TRACT	0	0.85	0.1018	FALSE	43	37	8	105	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	5	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.0463	0.0555	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.79	1	0.1018	FALSE	407	2205	196	549	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	HSPBP1--GRK5	6	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0555	TRUE	1	39	0	134	39	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	6	0	MT-ND5	1785	chrM:13121:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0555	FALSE	43	37	8	105	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	6	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0555	FALSE	369	2501	205	193	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	6	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.71	1	0.037	0.0555	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.71	1	0.0925	FALSE	499	1288	110	792	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	6	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.037	0.0555	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.83	1	0.0925	FALSE	499	1288	110	792	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	3	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	52	15	0.19	0.44	0.0278	0.0833	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.19	0.44	0.1111	TRUE	267	562	48	632	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--MID1	5	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	54	0.86	0.1	0.0463	0.0093	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.1	0.86	0.0556	FALSE	16	356	14	466	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	JUP--MT-CO3	4	4	JUP	8242	chr17:39923795:-	MT-CO3	24128	chrM:9574:+	INCL_NON_REF_SPLICE	YES	678	18717	0.01	0	0.037	0.037	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU1076_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.074	FALSE	0	0	0	33	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0463	FALSE	499	1288	110	792	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	WTAPP1--RUVBL1	5	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0463	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0463	TRUE	9	252	6	66	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	7	MT-ND5	2543	chrM:13879:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	4527	0	0	1	0.0278	0.0648	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1076_UPPER_AERODIGESTIVE_TRACT	0	1	0.0926	FALSE	43	37	8	105	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	7	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.71	1	0.0278	0.0648	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.71	1	0.0926	FALSE	499	1288	110	792	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	4	3	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0.0278	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0648	FALSE	13	214	14	42	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-141M1.3--STARD13	4	3	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	24	0.7	0.23	0.037	0.0278	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.23	0.7	0.0648	FALSE	49	120	16	70	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MIR205HG--PANK2	4	2	MIR205HG	4006	chr1:209605170:+	PANK2	16617	chr20:3899318:+	ONLY_REF_SPLICE	YES	484	214	0.01	0.03	0.037	0.0185	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.01	0.03	0.0555	FALSE	0	15	0	5	1	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-494M8.4--OVCH2	3	6	RP11-494M8.4	8241	chr11:7873820:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.0555	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0833	FALSE	1	0	0	7	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	JUP--MT-CO3	4	1	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	721	18989	0.01	0	0.037	0.0093	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU1076_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0463	FALSE	0	0	0	33	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	5	MT-ND5	2449	chrM:13785:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	NO	3530	9	0	0.47	0.0278	0.0463	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1076_UPPER_AERODIGESTIVE_TRACT	0	0.47	0.0741	FALSE	43	37	8	105	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	5	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	3641	5	0	0.62	0.0278	0.0463	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1076_UPPER_AERODIGESTIVE_TRACT	0	0.62	0.0741	FALSE	43	37	8	105	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MIR205HG--EML2	4	0	MIR205HG	4006	chr1:209605170:+	EML2	14776	chr19:46142131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,EML2->chr19:46110252-46148887:-,echinoderm_microtubule_associated_protein_like_2	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.037	TRUE	0	0	0	3	0	TRUE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	4	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.037	FALSE	369	2501	205	193	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	3	4	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.037	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0648	FALSE	13	214	14	42	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	NDFIP2--CREM	4	0	NDFIP2	1373	chr13:80055659:+	CREM	34070	chr10:35495823:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	NDFIP2->Nedd4_family_interacting_protein_2,chr13:80055287-80130210:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	3	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.54	0.0278	0.037	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.54	1	0.0648	TRUE	458	1351	185	561	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	3	MT-ND5	2181	chrM:13517:+	MT-ATP8	5878	chrM:8431:+	INCL_NON_REF_SPLICE	YES	4832	1	0	0.86	0.0278	0.0278	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1076_UPPER_AERODIGESTIVE_TRACT	0	0.86	0.0556	FALSE	43	37	8	105	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	1	MT-ND5	1673	chrM:13009:+	MT-ATP8	5817	chrM:8370:+	INCL_NON_REF_SPLICE	YES	5828	0	0	1	0.0278	0.0093	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1076_UPPER_AERODIGESTIVE_TRACT	0	1	0.0371	FALSE	42	36	7	104	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	1	MT-ND5	1590	chrM:12926:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	6019	0	0	1	0.0278	0.0093	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1076_UPPER_AERODIGESTIVE_TRACT	0	1	0.0371	FALSE	42	36	7	104	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-TW--MT-ND2	3	1	MT-TW	1010	chrM:5521:+	MT-ND2	5017	chrM:5418:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.0093	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0371	FALSE	14	0	0	19	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	0	MT-ND5	1626	chrM:12962:+	MT-ATP8	5922	chrM:8475:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0278	FALSE	42	36	7	104	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0278	FALSE	499	1288	110	792	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	PRR16--CTD-2334D19.1	2	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	13	0	0.28	1	0.0185	0.0278	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.28	1	0.0463	FALSE	56	216	12	147	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	CTDSP1--C9orf3	2	1	CTDSP1	5150	chr2:219267128:+	C9orf3	48479	chr9:97848964:+	ONLY_REF_SPLICE	YES	107	528	0.03	0.01	0.0185	0.0093	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:17=pct:4.6],Esophagus=[count:10=pct:2.5],Uterus=[count:6=pct:14.0],Nerve=[count:6=pct:3.5],Skin=[count:4=pct:1.3],Colon=[count:4=pct:2.1],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Salivary_Gland=[count:1=pct:2.6],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Brain=[count:1=pct:0.2]},GTEx_v2:{count=84;pct=0.97%;dist=Artery_-_Tibial=9,Nerve_-_Tibial=8,Esophagus_-_Muscularis=8,Artery_-_Aorta=7,Skin_-_Sun_Exposed_(Lower_leg)=6,Heart_-_Left_Ventricle=6,Artery_-_Coronary=5,Uterus=4,Esophagus_-_Gastroesophageal_Junction=4,Adipose_-_Subcutaneous=3,Vagina=2,Prostate=2,Esophagus_-_Mucosa=2,Adrenal_Gland=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Colon_-_Sigmoid=2,Colon_-_Transverse=2,Ovary=1,Pancreas=1,Brain_-_Hippocampus=1,Kidney_-_Cortex=1,Liver=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1,Brain_-_Substantia_nigra=1},CTDSP1->CTD_small_phosphatase_1,chr2:219262979-219270664:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.01	0.03	0.0278	FALSE	58	57	6	3	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	EMG1--C9orf3	2	1	EMG1	1104	chr12:7072511:+	C9orf3	49547	chr9:97848964:+	ONLY_REF_SPLICE	YES	1	528	0.75	0.01	0.0185	0.0093	EMG1->EMG1_N1-specific_pseudouridine_methyltransferase,chr12:7072408-7105520:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.01	0.75	0.0278	FALSE	0	9	0	2	3	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RNF152--RP11-879F14.1	2	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	YES	11	0	0.21	1	0.0185	0.0093	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.21	1	0.0278	FALSE	119	124	24	18	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-108K3.1--GLDN	2	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0.0093	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0278	FALSE	0	30	1	55	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-108K3.1--GLDN	2	1	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0.0093	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0278	FALSE	0	19	0	46	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-141M1.3--STARD13	2	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	24	0.5	0.11	0.0185	0.0093	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.11	0.5	0.0278	FALSE	141	264	50	91	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	CPSF6--CHMP1A	2	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0185	TRUE	95	74	6	34	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0185	FALSE	46	201	11	112	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-494M8.4--OVCH2	2	0	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	SNU1076_UPPER_AERODIGESTIVE_TRACT	1	1	0.0185	FALSE	60	13	8	23	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	18	0	0.14	1	0.0093	0.0185	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.14	1	0.0278	FALSE	164	806	69	479	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	LAMA5--TNFAIP2	1	1	LAMA5	25651	chr20:60898512:-	TNFAIP2	46090	chr14:103592647:+	ONLY_REF_SPLICE	YES	625	1070	0	0	0.0093	0.0093	LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5,TNFAIP2->TNF_alpha_induced_protein_2,chr14:103589779-103603776:+	SNU1076_UPPER_AERODIGESTIVE_TRACT	0	0	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RNF152--RP11-879F14.1	1	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	11	0	0.15	1	0.0093	0.0093	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.15	1	0.0186	FALSE	275	472	65	43	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	54	0.29	0.04	0.0093	0.0093	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.04	0.29	0.0186	FALSE	0	48	1	163	0	FALSE	ACH-000549
SNU1076_UPPER_AERODIGESTIVE_TRACT	RP11-624L4.1--RP11-265N7.1	1	1	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	39	0	0.05	1	0.0093	0.0093	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	SNU1076_UPPER_AERODIGESTIVE_TRACT	0.05	1	0.0186	FALSE	0	20	1	20	0	FALSE	ACH-000549
GB1_CENTRAL_NERVOUS_SYSTEM	HNRNPH1--C5orf60	670	340	HNRNPH1	6671	chr5:179047893:-	C5orf60	19554	chr5:179068879:-	ONLY_REF_SPLICE	YES	1150	33	0.47	0.97	9.2663	4.7023	LOCAL_REARRANGEMENT:-:[6760],HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),C5orf60->chr5:179068545-179072047:-,chromosome_5_open_reading_frame_60	GB1_CENTRAL_NERVOUS_SYSTEM	0.47	0.97	13.9686	TRUE	0	0	0	2	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	ABCA1--RPS6P12	118	61	ABCA1	6938	chr9:107623960:-	RPS6P12	58355	chr9:85359359:-	INCL_NON_REF_SPLICE	YES	14	0	0.93	1	1.632	0.8436	ABCA1->ATP_binding_cassette_subfamily_A_member_1,Oncogene{Bushman},chr9:107543283-107690518:-,RPS6P12->chr9:85358982-85359707:-,ribosomal_protein_S6_pseudogene_12	GB1_CENTRAL_NERVOUS_SYSTEM	0.93	1	2.4756	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	87	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2032	0.4426	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	1.6458	TRUE	508	994	45	981	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	HNRNPH1--C5orf60	1	351	HNRNPH1	6671	chr5:179047893:-	C5orf60	18943	chr5:179069490:-	ONLY_REF_SPLICE	NO	1150	10	0.23	0.97	0.0138	4.8544	LOCAL_REARRANGEMENT:-:[6760],HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),C5orf60->chr5:179068545-179072047:-,chromosome_5_open_reading_frame_60	GB1_CENTRAL_NERVOUS_SYSTEM	0.23	0.97	4.8682	TRUE	0	0	0	2	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	R3HDM2--OS9	73	26	R3HDM2	2356	chr12:57789532:-	OS9	36037	chr12:58109543:+	ONLY_REF_SPLICE	YES	34	471	0.74	0.17	1.0096	0.3596	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	GB1_CENTRAL_NERVOUS_SYSTEM	0.17	0.74	1.3692	TRUE	0	0	0	3	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	48	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	285	7	0.15	0.88	0.6639	0.0138	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.15	0.88	0.6777	TRUE	519	3926	326	965	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	ZNF445--SLC45A4	44	17	ZNF445	1080	chr3:44519083:-	SLC45A4	21058	chr8:142264728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6085	0.2351	ZNF445->chr3:44481262-44519162:-,zinc_finger_protein_445,SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.8436	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	HNRNPH1--C5orf60	12	113	HNRNPH1	6321	chr5:179048243:-	C5orf60	19554	chr5:179068879:-	ONLY_REF_SPLICE	YES	1434	33	0.08	0.79	0.166	1.5628	LOCAL_REARRANGEMENT:-:[6760],HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),C5orf60->chr5:179068545-179072047:-,chromosome_5_open_reading_frame_60	GB1_CENTRAL_NERVOUS_SYSTEM	0.08	0.79	1.7288	TRUE	0	0	0	2	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	34	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	4	1	0.91	0.4702	0.0968	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.567	TRUE	477	1352	189	275	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	IAH1--TBC1D16	26	14	IAH1	6108	chr2:9621576:+	TBC1D16	18862	chr17:77987408:-	ONLY_REF_SPLICE	YES	1	2	0.98	0.95	0.3596	0.1936	IAH1->chr2:9613787-9636672:+,isoamyl_acetate-hydrolyzing_esterase_1_homolog,TBC1D16->TBC1_domain_family_member_16,chr17:77906142-78009647:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.95	0.98	0.5532	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	TOP1--EYA2	23	5	TOP1	8178	chr20:39713208:+	EYA2	40028	chr20:45771698:+	ONLY_REF_SPLICE	YES	154	7	0.15	0.8	0.3181	0.0692	TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	GB1_CENTRAL_NERVOUS_SYSTEM	0.15	0.8	0.3873	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	22	8	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.3043	0.1106	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GB1_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.4149	FALSE	43	37	8	105	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	ZNFX1--NCOA3	14	21	ZNFX1	2606	chr20:47892316:-	NCOA3	31101	chr20:46250973:+	ONLY_REF_SPLICE	YES	23	29	0.6	0.55	0.1936	0.2904	ZNFX1->chr20:47854483-47894963:-,zinc_finger_NFX1-type_containing_1,NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3	GB1_CENTRAL_NERVOUS_SYSTEM	0.55	0.6	0.484	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	ATP5B--IL23A	5	52	ATP5B	4557	chr12:57036242:-	IL23A	11123	chr12:56733210:+	ONLY_REF_SPLICE	YES	3973	8	0.01	0.88	0.0692	0.7192	ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-,IL23A->Oncogene{Bushman},chr12:56732663-56734193:+,interleukin_23_subunit_alpha	GB1_CENTRAL_NERVOUS_SYSTEM	0.01	0.88	0.7884	TRUE	0	0	0	1	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	RP11-494M8.4--OVCH2	13	12	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1798	0.166	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.3458	FALSE	32	0	0	22	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	CTNNBL1--ZNF595	11	9	CTNNBL1	18646	chr20:36431450:+	ZNF595	29901	chr4:59323:+	ONLY_REF_SPLICE	YES	196	7	0.09	0.74	0.1521	0.1245	CTNNBL1->catenin_beta_like_1,chr20:36322408-36500531:+,ZNF595->chr4:53179-88099:+,zinc_finger_protein_595	GB1_CENTRAL_NERVOUS_SYSTEM	0.09	0.74	0.2766	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	9	6	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1425	2	0.01	0.88	0.1245	0.083	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GB1_CENTRAL_NERVOUS_SYSTEM	0.01	0.88	0.2075	FALSE	43	37	8	105	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	GPALPP1--NUFIP1	9	5	GPALPP1	10576	chr13:45602138:+	NUFIP1	24230	chr13:45540071:-	ONLY_REF_SPLICE	YES	48	44	0.23	0.24	0.1245	0.0692	LOCAL_INVERSION:+:-:[69],GPALPP1->GPALPP_motifs_containing_1,chr13:45563687-45607746:+,NUFIP1->chr13:45513384-45563618:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_1	GB1_CENTRAL_NERVOUS_SYSTEM	0.23	0.24	0.1937	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	RP11-494M8.4--OVCH2	7	13	RP11-494M8.4	10901	chr11:7775931:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0968	0.1798	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.2766	FALSE	16	1	1	11	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	9	4	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4	395	0.76	0.03	0.1245	0.0553	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GB1_CENTRAL_NERVOUS_SYSTEM	0.03	0.76	0.1798	FALSE	43	37	8	105	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	7	8	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0968	0.1106	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.2074	FALSE	43	37	8	105	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	HNRNPH1--C5orf60	1	31	HNRNPH1	4526	chr5:179050038:-	C5orf60	19554	chr5:179068879:-	ONLY_REF_SPLICE	YES	1048	33	0.03	0.49	0.0138	0.4287	LOCAL_REARRANGEMENT:-:[6760],HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),C5orf60->chr5:179068545-179072047:-,chromosome_5_open_reading_frame_60	GB1_CENTRAL_NERVOUS_SYSTEM	0.03	0.49	0.4425	TRUE	0	0	0	1	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	IGFBP4--NPM1	8	2	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	1176	2	0.01	0.83	0.1106	0.0277	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	GB1_CENTRAL_NERVOUS_SYSTEM	0.01	0.83	0.1383	TRUE	0	0	0	38	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	7	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	145	0.86	0.08	0.0968	0.0692	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	GB1_CENTRAL_NERVOUS_SYSTEM	0.08	0.86	0.166	FALSE	16	356	14	466	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	USP15--RP11-767I20.1	7	5	USP15	21571	chr12:62775444:+	RP11-767I20.1	39599	chr12:59150814:-	ONLY_REF_SPLICE	YES	101	0	0.11	1	0.0968	0.0692	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,RP11-767I20.1->chr12:58959743-59175529:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.166	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AP000345.1	8	0	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1106	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1106	TRUE	4	17	0	31	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	HSPBP1--GRK5	8	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1106	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1106	TRUE	1	39	0	134	39	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	RP11-494M8.4--OVCH2	4	12	RP11-494M8.4	8241	chr11:7873820:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0553	0.166	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	GB1_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.2213	FALSE	1	0	0	7	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	SEMA4D--CDC14B	7	0	SEMA4D	1212	chr9:92112834:-	CDC14B	49443	chr9:99286007:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0968	0	SEMA4D->Oncogene{Bushman},chr9:91975702-92113045:-,semaphorin_4D,CDC14B->cell_division_cycle_14B,chr9:99252523-99382112:-	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	IAH1--TBC1D16	3	14	IAH1	6108	chr2:9621576:+	TBC1D16	18866	chr17:77987404:-	INCL_NON_REF_SPLICE	YES	1	2	0.94	0.89	0.0415	0.1936	IAH1->chr2:9613787-9636672:+,isoamyl_acetate-hydrolyzing_esterase_1_homolog,TBC1D16->TBC1_domain_family_member_16,chr17:77906142-78009647:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.89	0.94	0.2351	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	5	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.67	1	0.0692	0.0692	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.1384	FALSE	125	705	46	456	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	PTPRO--RP11-444D3.1	5	5	PTPRO	1405	chr12:15475735:+	RP11-444D3.1	44382	chr12:24430246:-	ONLY_REF_SPLICE	YES	0	4	1	0.71	0.0692	0.0692	PTPRO->chr12:15475331-15750333:+,protein_tyrosine_phosphatase,_receptor_type_O,RP11-444D3.1->chr12:24366190-24715524:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.71	1	0.1384	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	AP000525.9--LA16c-60G3.6	6	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.083	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.083	TRUE	0	42	0	133	42	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.083	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.083	FALSE	183	104	9	328	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	NCOA3--RP5-1121H13.4	5	2	NCOA3	17365	chr20:46271128:+	RP5-1121H13.4	29538	chr20:40619786:+	INCL_NON_REF_SPLICE	YES	22	0	0.24	1	0.0692	0.0277	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,RP5-1121H13.4->chr20:40619780-40692609:+	GB1_CENTRAL_NERVOUS_SYSTEM	0.24	1	0.0969	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0692	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0692	FALSE	0	0	0	189	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	TBL1XR1--RP11-644C3.1	4	3	TBL1XR1	5415	chr3:176816254:-	RP11-644C3.1	34372	chr3:176571556:-	ONLY_REF_SPLICE	YES	35	0	0.17	1	0.0553	0.0415	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-644C3.1->chr3:176361729-176585626:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.17	1	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	PTGES3--MT-ND4L	4	2	PTGES3	1363	chr12:57081797:-	MT-ND4L	12459	chrM:10471:+	INCL_NON_REF_SPLICE	YES	3330	0	0	1	0.0553	0.0277	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GB1_CENTRAL_NERVOUS_SYSTEM	0	1	0.083	FALSE	0	0	0	4	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	RP11-494M8.4--OVCH2	4	2	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	11	0	0.35	1	0.0553	0.0277	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	GB1_CENTRAL_NERVOUS_SYSTEM	0.35	1	0.083	FALSE	60	13	8	23	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	R3HDM2--OS9	3	5	R3HDM2	1286	chr12:57824503:-	OS9	36037	chr12:58109543:+	ONLY_REF_SPLICE	YES	2	471	0.8	0.02	0.0415	0.0692	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	GB1_CENTRAL_NERVOUS_SYSTEM	0.02	0.8	0.1107	TRUE	0	0	0	1	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	SLC1A1--AHNAK2	4	1	SLC1A1	1327	chr9:4490770:+	AHNAK2	21645	chr14:105424009:-	ONLY_REF_SPLICE	YES	2	1	0.71	0.83	0.0553	0.0138	SLC1A1->chr9:4490444-4587469:+,solute_carrier_family_1_member_1,AHNAK2->AHNAK_nucleoprotein_2,chr14:105403581-105444694:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.71	0.83	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AP000345.1	4	0	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0553	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0553	TRUE	0	8	0	37	1	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ATP8	3	4	MT-ND5	2735	chrM:14071:+	MT-ATP8	5933	chrM:8486:+	INCL_NON_REF_SPLICE	YES	3	617	0.7	0.01	0.0415	0.0553	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GB1_CENTRAL_NERVOUS_SYSTEM	0.01	0.7	0.0968	FALSE	43	37	8	105	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	RCC1--CTD-2354A18.1	4	0	RCC1	2175	chr1:28834672:+	CTD-2354A18.1	21770	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0553	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CTD-2354A18.1->chr18:70992176-71017113:+	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0553	TRUE	0	1	0	7	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	RP11-274B21.1--METTL2B	3	4	RP11-274B21.1	6327	chr7:128220148:+	METTL2B	23404	chr7:128119212:+	ONLY_REF_SPLICE	YES	18	148	0.28	0.05	0.0415	0.0553	LOCAL_REARRANGEMENT:+:[25096],RP11-274B21.1->chr7:128171752-128269512:+,METTL2B->chr7:128116783-128146656:+,methyltransferase_like_2B	GB1_CENTRAL_NERVOUS_SYSTEM	0.05	0.28	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	RP11-308N19.1--RP11-308N19.4	3	4	RP11-308N19.1	8273	chr9:109366218:+	RP11-308N19.4	13391	chr9:109400440:+	INCL_NON_REF_SPLICE	YES	21	1	0.25	0.88	0.0415	0.0553	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	GB1_CENTRAL_NERVOUS_SYSTEM	0.25	0.88	0.0968	FALSE	0	0	0	2	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	SLC45A4--RALYL	4	0	SLC45A4	1210	chr8:142318195:-	RALYL	25529	chr8:85441534:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0553	0	SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0553	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	DPH6-AS1--RP11-684B21.1	3	2	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	13	0	0.28	1	0.0415	0.0277	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	GB1_CENTRAL_NERVOUS_SYSTEM	0.28	1	0.0692	TRUE	17	119	17	33	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	CTNNBL1--ZNF595	2	5	CTNNBL1	18646	chr20:36431450:+	ZNF595	30529	chr4:59951:+	ONLY_REF_SPLICE	YES	196	5	0.03	0.58	0.0277	0.0692	CTNNBL1->catenin_beta_like_1,chr20:36322408-36500531:+,ZNF595->chr4:53179-88099:+,zinc_finger_protein_595	GB1_CENTRAL_NERVOUS_SYSTEM	0.03	0.58	0.0969	TRUE	0	0	0	1	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	ACOT8--CHD6	3	0	ACOT8	6737	chr20:44472902:-	CHD6	44043	chr20:40065974:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0415	0	ACOT8->acyl-CoA_thioesterase_8,chr20:44470360-44486045:-,CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0415	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	IFFO1--RP11-114G22.1	3	0	IFFO1	1817	chr12:6664423:-	RP11-114G22.1	30706	chr12:23206925:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0415	0	IFFO1->chr12:6647541-6665239:-,intermediate_filament_family_orphan_1,RP11-114G22.1->chr12:22852793-23327057:+	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0415	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	0	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0415	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0415	FALSE	183	104	9	328	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	6	0	0.6	1	0.0138	0.1106	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.6	1	0.1244	FALSE	164	806	69	479	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	USP15--RP11-767I20.1	2	4	USP15	21571	chr12:62775444:+	RP11-767I20.1	40669	chr12:59106134:-	ONLY_REF_SPLICE	YES	101	0	0.06	1	0.0277	0.0553	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,RP11-767I20.1->chr12:58959743-59175529:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.083	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0.0415	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0692	FALSE	292	1546	117	613	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	CREB3L2--DGKI	2	2	CREB3L2	1464	chr7:137686350:-	DGKI	37170	chr7:137308300:-	ONLY_REF_SPLICE	YES	37	2	0.1	0.67	0.0277	0.0277	NEIGHBORS[27887],CREB3L2->Oncogene{Bushman},cAMP_responsive_element_binding_protein_3-like_2,chr7:137559725-137686813:-,DGKI->chr7:137065783-137531838:-,diacylglycerol_kinase_iota	GB1_CENTRAL_NERVOUS_SYSTEM	0.1	0.67	0.0554	FALSE	0	0	0	1	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	CTNNBL1--ZNF595	2	2	CTNNBL1	18646	chr20:36431450:+	ZNF595	31986	chr4:67732:+	ONLY_REF_SPLICE	YES	196	2	0.02	0.67	0.0277	0.0277	CTNNBL1->catenin_beta_like_1,chr20:36322408-36500531:+,ZNF595->chr4:53179-88099:+,zinc_finger_protein_595	GB1_CENTRAL_NERVOUS_SYSTEM	0.02	0.67	0.0554	TRUE	0	0	0	1	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	RP11-308N19.1--RP11-308N19.4	2	2	RP11-308N19.1	6003	chr9:109320864:+	RP11-308N19.4	13391	chr9:109400440:+	ONLY_REF_SPLICE	YES	35	1	0.1	0.8	0.0277	0.0277	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	GB1_CENTRAL_NERVOUS_SYSTEM	0.1	0.8	0.0554	FALSE	0	0	0	3	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	CREB3L2--DGKI	2	1	CREB3L2	1464	chr7:137686350:-	DGKI	38242	chr7:137304686:-	ONLY_REF_SPLICE	NO	37	2	0.07	0.6	0.0277	0.0138	NEIGHBORS[27887],CREB3L2->Oncogene{Bushman},cAMP_responsive_element_binding_protein_3-like_2,chr7:137559725-137686813:-,DGKI->chr7:137065783-137531838:-,diacylglycerol_kinase_iota	GB1_CENTRAL_NERVOUS_SYSTEM	0.07	0.6	0.0415	FALSE	0	0	0	1	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	PDHX--CD44	2	1	PDHX	3068	chr11:34953031:+	CD44	20666	chr11:35198122:+	ONLY_REF_SPLICE	YES	120	2606	0.02	0	0.0277	0.0138	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	GB1_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0415	FALSE	0	0	0	5	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	4	1	0.6	0.0138	0.0692	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.6	1	0.083	TRUE	274	363	69	150	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	ANP32B--NCBP1	2	0	ANP32B	1249	chr9:100745891:+	NCBP1	33828	chr9:100431875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCBP1->chr9:100395908-100436030:+,nuclear_cap_binding_protein_subunit_1	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	COPB2--OPHN1	2	0	COPB2	1185	chr3:139108390:-	OPHN1	30098	chrX:67518938:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,OPHN1->chrX:67262186-67653755:-,oligophrenin_1	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	ELF1--LINC00437	2	0	ELF1	1603	chr13:41634974:-	LINC00437	18359	chr13:39108157:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-,LINC00437->chr13:39107480-39119436:-,long_intergenic_non-protein_coding_RNA_437	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	EYA3--NRD1	2	0	EYA3	1173	chr1:28415035:-	NRD1	32501	chr1:52306186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,NRD1->chr1:52254863-52344477:-	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	ITGB1--WAC	2	0	ITGB1	7027	chr10:33247073:-	WAC	38887	chr10:28872328:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1,WAC->WW_domain_containing_adaptor_with_coiled-coil,chr10:28821422-28912041:+	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	LRIG3--TSFM	2	0	LRIG3	13162	chr12:59274363:-	TSFM	32953	chr12:58196338:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	LRIG3->chr12:59265931-59314303:-,leucine-rich_repeats_and_immunoglobulin_like_domains_3,TSFM->Ts_translation_elongation_factor,_mitochondrial,chr12:58176372-58201854:+	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	STK38--FLOT1	2	0	STK38	1281	chr6:36514967:-	FLOT1	21624	chr6:30708575:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	STK38->chr6:36461669-36515247:-,serine/threonine_kinase_38,FLOT1->chr6:30695486-30710510:-,flotillin_1	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	USP15--RP11-767I20.1	2	0	USP15	21571	chr12:62775444:+	RP11-767I20.1	43032	chr12:59003331:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,RP11-767I20.1->chr12:58959743-59175529:-	GB1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	4	145	0.5	0.03	0.0138	0.0415	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	GB1_CENTRAL_NERVOUS_SYSTEM	0.03	0.5	0.0553	FALSE	0	48	1	163	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	USP15--RP11-767I20.1	1	3	USP15	19251	chr12:62749256:+	RP11-767I20.1	39599	chr12:59150814:-	ONLY_REF_SPLICE	YES	132	0	0.03	1	0.0138	0.0415	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,RP11-767I20.1->chr12:58959743-59175529:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0553	TRUE	0	0	0	1	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	RP11-308N19.1--RP11-308N19.4	1	2	RP11-308N19.1	7091	chr9:109350745:+	RP11-308N19.4	15583	chr9:109427034:+	ONLY_REF_SPLICE	YES	30	1	0.09	0.75	0.0138	0.0277	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	GB1_CENTRAL_NERVOUS_SYSTEM	0.09	0.75	0.0415	FALSE	2	0	0	5	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	USP15--RP11-767I20.1	1	2	USP15	19251	chr12:62749256:+	RP11-767I20.1	40669	chr12:59106134:-	ONLY_REF_SPLICE	YES	132	0	0.02	1	0.0138	0.0277	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,RP11-767I20.1->chr12:58959743-59175529:-	GB1_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0415	TRUE	0	0	0	1	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	AP000320.7--C16orf45	1	1	AP000320.7	2294	chr21:35497780:+	C16orf45	16958	chr16:15661840:+	ONLY_REF_SPLICE	NO	0	57	1	0.03	0.0138	0.0138	AP000320.7->chr21:35445892-35732332:+,C16orf45->chr16:15528152-15718885:+,chromosome_16_open_reading_frame_45	GB1_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0276	TRUE	0	0	0	1	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	ATL2--HNRNPLL	1	1	ATL2	1143	chr2:38604285:-	HNRNPLL	26994	chr2:38813023:-	ONLY_REF_SPLICE	YES	117	113	0.02	0.02	0.0138	0.0138	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	GB1_CENTRAL_NERVOUS_SYSTEM	0.02	0.02	0.0276	TRUE	0	1	0	4	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	PPFIBP1--SMCO2	1	1	PPFIBP1	4200	chr12:27731172:+	SMCO2	45492	chr12:27627719:+	ONLY_REF_SPLICE	YES	162	1	0.01	0.67	0.0138	0.0138	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	GB1_CENTRAL_NERVOUS_SYSTEM	0.01	0.67	0.0276	FALSE	0	1	0	5	1	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	RP11-115J23.1--RP11-466I1.1	1	1	RP11-115J23.1	4468	chr11:29059363:+	RP11-466I1.1	12826	chr11:29233202:+	ONLY_REF_SPLICE	NO	5	0	0.29	1	0.0138	0.0138	NEIGHBORS[96135],RP11-115J23.1->chr11:28724162-29085368:+,RP11-466I1.1->chr11:29181503-29288281:+	GB1_CENTRAL_NERVOUS_SYSTEM	0.29	1	0.0276	FALSE	0	0	0	4	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	RP11-308N19.1--RP11-308N19.4	1	1	RP11-308N19.1	1799	chr9:109041471:+	RP11-308N19.4	13391	chr9:109400440:+	ONLY_REF_SPLICE	YES	42	1	0.05	0.67	0.0138	0.0138	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	GB1_CENTRAL_NERVOUS_SYSTEM	0.05	0.67	0.0276	FALSE	2	0	0	2	0	FALSE	ACH-000738
GB1_CENTRAL_NERVOUS_SYSTEM	SPTBN1--RTN4	1	1	SPTBN1	4816	chr2:54753703:+	RTN4	65986	chr2:55214834:-	ONLY_REF_SPLICE	NO	162	196	0.01	0.01	0.0138	0.0138	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Heart=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},GTEx_v2:{count=10;pct=0.12%;dist=Breast_-_Mammary_Tissue=2,Adipose_-_Subcutaneous=2,Lung=2,Brain_-_Putamen_(basal_ganglia)=1,Nerve_-_Tibial=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Frontal_Cortex_(BA9)=1},SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	GB1_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0276	FALSE	5	1	1	2	0	FALSE	ACH-000738
HS888T_FIBROBLAST	TIMM23B--LINC00843	112	48	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.1915	0.5107	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS888T_FIBROBLAST	0.99	1	1.7022	TRUE	508	994	45	981	0	FALSE	ACH-000154
HS888T_FIBROBLAST	TIMM23--RP11-464F9.1	70	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	303	2	0.2	0.97	0.7447	0.0638	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS888T_FIBROBLAST	0.2	0.97	0.8085	TRUE	519	3926	326	965	0	FALSE	ACH-000154
HS888T_FIBROBLAST	RP11-680G10.1--GSE1	52	12	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	27	1	0.7	0.5532	0.1277	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS888T_FIBROBLAST	0.7	1	0.6809	TRUE	465	1949	224	605	0	FALSE	ACH-000154
HS888T_FIBROBLAST	RP11-680G10.1--GSE1	49	20	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.93	0.5213	0.2128	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS888T_FIBROBLAST	0.93	1	0.7341	TRUE	458	1351	185	561	0	FALSE	ACH-000154
HS888T_FIBROBLAST	RP11-444D3.1--SOX5	27	8	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.2872	0.0851	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS888T_FIBROBLAST	0.97	1	0.3723	TRUE	477	1352	189	275	0	FALSE	ACH-000154
HS888T_FIBROBLAST	PLXDC1--TAF13	28	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2979	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS888T_FIBROBLAST	1	1	0.2979	TRUE	7	10	0	216	0	FALSE	ACH-000154
HS888T_FIBROBLAST	ZNF654--HMGB2	23	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2447	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HS888T_FIBROBLAST	1	1	0.2447	TRUE	0	0	0	518	0	FALSE	ACH-000154
HS888T_FIBROBLAST	IGFBP4--NPM1	16	4	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	3226	7	0.01	0.74	0.1702	0.0426	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HS888T_FIBROBLAST	0.01	0.74	0.2128	TRUE	0	0	0	38	0	FALSE	ACH-000154
HS888T_FIBROBLAST	C15orf57--CBX3	11	20	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	63	34	0.33	0.48	0.117	0.2128	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS888T_FIBROBLAST	0.33	0.48	0.3298	TRUE	267	562	48	632	0	FALSE	ACH-000154
HS888T_FIBROBLAST	SF3B1--COL1A2	15	1	SF3B1	11321	chr2:198270103:-	COL1A2	48672	chr7:94049941:+	INCL_NON_REF_SPLICE	NO	408	5632	0.04	0	0.1596	0.0106	SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS888T_FIBROBLAST	0	0.04	0.1702	FALSE	0	0	0	3	0	FALSE	ACH-000154
HS888T_FIBROBLAST	RP4-565E6.1--HYDIN	11	8	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.117	0.0851	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS888T_FIBROBLAST	1	1	0.2021	TRUE	456	1387	91	133	0	FALSE	ACH-000154
HS888T_FIBROBLAST	VIM--TPM2	12	2	VIM	2156	chr10:17271413:+	TPM2	13400	chr9:35689822:-	INCL_NON_REF_SPLICE	YES	9407	221	0	0.06	0.1277	0.0213	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS888T_FIBROBLAST	0	0.06	0.149	TRUE	0	0	0	8	0	FALSE	ACH-000154
HS888T_FIBROBLAST	C15orf57--CBX3	8	17	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	65	35	0.28	0.42	0.0851	0.1809	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS888T_FIBROBLAST	0.28	0.42	0.266	TRUE	267	562	48	632	0	FALSE	ACH-000154
HS888T_FIBROBLAST	COL1A1--NPM1	8	16	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	8733	7	0	0.77	0.0851	0.1702	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HS888T_FIBROBLAST	0	0.77	0.2553	TRUE	0	0	0	31	0	FALSE	ACH-000154
HS888T_FIBROBLAST	FTH1--ACTB	10	4	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	8631	2	0	0.88	0.1064	0.0426	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS888T_FIBROBLAST	0	0.88	0.149	TRUE	1	0	0	97	0	FALSE	ACH-000154
HS888T_FIBROBLAST	VIM--TPM2	9	1	VIM	2142	chr10:17271399:+	TPM2	13302	chr9:35689920:-	INCL_NON_REF_SPLICE	YES	4847	32	0	0.24	0.0957	0.0106	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS888T_FIBROBLAST	0	0.24	0.1063	TRUE	0	0	0	8	0	FALSE	ACH-000154
HS888T_FIBROBLAST	EEF2--MCL1	8	1	EEF2	8745	chr19:3977567:-	MCL1	13574	chr1:150551751:-	INCL_NON_REF_SPLICE	NO	4526	2403	0	0	0.0851	0.0106	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MCL1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:150547032-150552066:-,myeloid_cell_leukemia_1	HS888T_FIBROBLAST	0	0	0.0957	FALSE	0	0	0	1	0	FALSE	ACH-000154
HS888T_FIBROBLAST	FTH1--ACTB	7	4	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	8650	3	0	0.79	0.0745	0.0426	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS888T_FIBROBLAST	0	0.79	0.1171	TRUE	1	0	0	97	0	FALSE	ACH-000154
HS888T_FIBROBLAST	FN1--S100A6	7	1	FN1	12522	chr2:216285405:-	S100A6	55189	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	11245	2	0	0.8	0.0745	0.0106	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HS888T_FIBROBLAST	0	0.8	0.0851	FALSE	0	0	0	7	0	FALSE	ACH-000154
HS888T_FIBROBLAST	SF3B1--COL1A2	7	1	SF3B1	11321	chr2:198270103:-	COL1A2	48681	chr7:94049950:+	INCL_NON_REF_SPLICE	NO	408	5579	0.02	0	0.0745	0.0106	SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS888T_FIBROBLAST	0	0.02	0.0851	FALSE	0	0	0	3	0	FALSE	ACH-000154
HS888T_FIBROBLAST	VIM--FTH1	6	4	VIM	2166	chr10:17271423:+	FTH1	12403	chr11:61734934:-	INCL_NON_REF_SPLICE	YES	11143	7523	0	0	0.0638	0.0426	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	HS888T_FIBROBLAST	0	0	0.1064	TRUE	0	0	0	6	0	FALSE	ACH-000154
HS888T_FIBROBLAST	YWHAE--CRK	6	3	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	3181	178	0	0.05	0.0638	0.0319	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	HS888T_FIBROBLAST	0	0.05	0.0957	FALSE	6	50	7	115	0	FALSE	ACH-000154
HS888T_FIBROBLAST	TUBA1A--GAPDH	6	1	TUBA1A	1348	chr12:49582760:-	GAPDH	11073	chr12:6645660:+	ONLY_REF_SPLICE	YES	159	666	0.04	0.01	0.0638	0.0106	TUBA1A->chr12:49578579-49583107:-,tubulin_alpha_1a,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	HS888T_FIBROBLAST	0.01	0.04	0.0744	FALSE	0	0	0	1	0	FALSE	ACH-000154
HS888T_FIBROBLAST	SERPINE1--MT-ND4	6	0	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0638	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HS888T_FIBROBLAST	1	1	0.0638	FALSE	1	0	0	29	0	FALSE	ACH-000154
HS888T_FIBROBLAST	COL1A1--COL6A2	5	3	COL1A1	9774	chr17:48270001:-	COL6A2	29401	chr21:47537350:+	INCL_NON_REF_SPLICE	NO	7954	1823	0	0	0.0532	0.0319	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS888T_FIBROBLAST	0	0	0.0851	FALSE	0	0	0	6	0	FALSE	ACH-000154
HS888T_FIBROBLAST	PRR16--CTD-2334D19.1	5	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	128	0	0.06	1	0.0532	0.0319	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS888T_FIBROBLAST	0.06	1	0.0851	FALSE	56	216	12	147	0	FALSE	ACH-000154
HS888T_FIBROBLAST	RP11-680G10.1--GSE1	5	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	59	1	0.11	0.0532	0.0213	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS888T_FIBROBLAST	0.11	1	0.0745	TRUE	64	13	3	59	0	FALSE	ACH-000154
HS888T_FIBROBLAST	ADIRF-AS1--LGALS1	5	1	ADIRF-AS1	3782	chr10:88728287:-	LGALS1	10007	chr22:38071654:+	INCL_NON_REF_SPLICE	YES	30	0	0.17	1	0.0532	0.0106	ADIRF-AS1->ADIRF_antisense_RNA_1,chr10:88725102-88731068:-,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	HS888T_FIBROBLAST	0.17	1	0.0638	TRUE	0	0	0	5	0	TRUE	ACH-000154
HS888T_FIBROBLAST	IGFBP4--NPM1	3	9	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	3294	7	0	0.63	0.0319	0.0957	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HS888T_FIBROBLAST	0	0.63	0.1276	TRUE	0	0	0	38	0	FALSE	ACH-000154
HS888T_FIBROBLAST	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.5	1	0.0532	0.0106	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS888T_FIBROBLAST	0.5	1	0.0638	FALSE	292	1546	117	613	0	FALSE	ACH-000154
HS888T_FIBROBLAST	VIM--FTH1	5	0	VIM	2083	chr10:17271340:+	FTH1	12349	chr11:61734988:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0532	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	HS888T_FIBROBLAST	1	1	0.0532	TRUE	0	0	0	6	0	TRUE	ACH-000154
HS888T_FIBROBLAST	FN1--MT-ATP8	3	7	FN1	42597	chr2:216237035:-	MT-ATP8	54985	chrM:8415:+	INCL_NON_REF_SPLICE	YES	10816	0	0	1	0.0319	0.0745	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS888T_FIBROBLAST	0	1	0.1064	FALSE	0	2	0	3	0	FALSE	ACH-000154
HS888T_FIBROBLAST	FN1--S100A6	4	2	FN1	12528	chr2:216285399:-	S100A6	55195	chr1:153508461:-	INCL_NON_REF_SPLICE	YES	11559	2	0	0.75	0.0426	0.0213	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HS888T_FIBROBLAST	0	0.75	0.0639	FALSE	0	0	0	7	0	FALSE	ACH-000154
HS888T_FIBROBLAST	COL1A1--RAD23B	3	5	COL1A1	12987	chr17:48266788:-	RAD23B	27171	chr9:110068766:+	INCL_NON_REF_SPLICE	YES	8633	657	0	0.01	0.0319	0.0532	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,RAD23B->Oncogene{Bushman},RAD23_homolog_B,_nucleotide_excision_repair_protein,chr9:110045418-110094475:+	HS888T_FIBROBLAST	0	0.01	0.0851	FALSE	0	0	0	4	0	FALSE	ACH-000154
HS888T_FIBROBLAST	PRR16--CTD-2334D19.1	3	4	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	40	0	0.15	1	0.0319	0.0426	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS888T_FIBROBLAST	0.15	1	0.0745	FALSE	21	45	1	60	0	FALSE	ACH-000154
HS888T_FIBROBLAST	LINC00578--RP11-114M1.1	2	7	LINC00578	4542	chr3:177347343:+	RP11-114M1.1	10235	chr3:177401415:+	ONLY_REF_SPLICE	NO	29	0	0.24	1	0.0213	0.0745	NEIGHBORS_OVERLAP:+:+:[7623],LINC00578->chr3:177159709-177470093:+,long_intergenic_non-protein_coding_RNA_578,RP11-114M1.1->chr3:177401415-177409038:+	HS888T_FIBROBLAST	0.24	1	0.0958	FALSE	0	1	0	2	0	FALSE	ACH-000154
HS888T_FIBROBLAST	RP1-34H18.1--NAV3	3	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.0319	0.0213	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HS888T_FIBROBLAST	0.71	1	0.0532	TRUE	254	575	65	124	0	FALSE	ACH-000154
HS888T_FIBROBLAST	LMNA--FLNA	3	1	LMNA	16753	chr1:156106179:+	FLNA	26178	chrX:153596357:-	INCL_NON_REF_SPLICE	NO	3431	2035	0	0	0.0319	0.0106	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,LMNA->chr1:156052364-156109880:+,lamin_A/C,FLNA->chrX:153576892-153603006:-,filamin_A	HS888T_FIBROBLAST	0	0	0.0425	FALSE	0	0	0	1	0	FALSE	ACH-000154
HS888T_FIBROBLAST	SF3B1--COL1A2	3	1	SF3B1	11319	chr2:198270105:-	COL1A2	48669	chr7:94049938:+	INCL_NON_REF_SPLICE	NO	411	5662	0.01	0	0.0319	0.0106	SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS888T_FIBROBLAST	0	0.01	0.0425	FALSE	0	0	0	3	0	FALSE	ACH-000154
HS888T_FIBROBLAST	SF3B1--COL1A2	3	1	SF3B1	11320	chr2:198270104:-	COL1A2	48581	chr7:94049850:+	INCL_NON_REF_SPLICE	NO	409	6818	0.01	0	0.0319	0.0106	SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS888T_FIBROBLAST	0	0.01	0.0425	FALSE	0	0	0	3	0	FALSE	ACH-000154
HS888T_FIBROBLAST	FN1--GAPDH	1	8	FN1	41587	chr2:216238045:-	GAPDH	55819	chr12:6643976:+	ONLY_REF_SPLICE	YES	12035	75	0	0.11	0.0106	0.0851	GTEx&tcga_normals:2/3694=0.05%,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	HS888T_FIBROBLAST	0	0.11	0.0957	FALSE	0	0	0	1	0	FALSE	ACH-000154
HS888T_FIBROBLAST	FTH1--ACTB	3	0	FTH1	1217	chr11:61734916:-	ACTB	14415	chr7:5567408:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS888T_FIBROBLAST	1	1	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000154
HS888T_FIBROBLAST	VIM--TPM2	3	0	VIM	2115	chr10:17271372:+	TPM2	13298	chr9:35689924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS888T_FIBROBLAST	1	1	0.0319	TRUE	0	0	0	8	0	TRUE	ACH-000154
HS888T_FIBROBLAST	NRIP1--AF127936.7	2	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	23	0	0.18	1	0.0213	0.0319	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS888T_FIBROBLAST	0.18	1	0.0532	FALSE	164	806	69	479	0	FALSE	ACH-000154
HS888T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0213	0.0319	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS888T_FIBROBLAST	0.56	1	0.0532	FALSE	407	2205	196	549	0	FALSE	ACH-000154
HS888T_FIBROBLAST	LINC00578--RP11-114M1.1	2	2	LINC00578	4542	chr3:177347343:+	RP11-114M1.1	11442	chr3:177402732:+	ONLY_REF_SPLICE	NO	29	1	0.12	0.8	0.0213	0.0213	NEIGHBORS_OVERLAP:+:+:[7623],LINC00578->chr3:177159709-177470093:+,long_intergenic_non-protein_coding_RNA_578,RP11-114M1.1->chr3:177401415-177409038:+	HS888T_FIBROBLAST	0.12	0.8	0.0426	FALSE	0	1	0	2	0	FALSE	ACH-000154
HS888T_FIBROBLAST	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0213	0.0213	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS888T_FIBROBLAST	0.18	1	0.0426	FALSE	125	705	46	456	0	FALSE	ACH-000154
HS888T_FIBROBLAST	RP11-680G10.1--GSE1	2	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10590	chr16:85688400:+	ONLY_REF_SPLICE	YES	0	28	1	0.12	0.0213	0.0213	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS888T_FIBROBLAST	0.12	1	0.0426	TRUE	64	13	3	59	0	FALSE	ACH-000154
HS888T_FIBROBLAST	CTD-2337A12.1--CAST	2	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	269	1	0.01	0.0213	0.0106	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS888T_FIBROBLAST	0.01	1	0.0319	FALSE	347	1186	183	220	0	FALSE	ACH-000154
HS888T_FIBROBLAST	LMNA--FLNA	2	1	LMNA	13767	chr1:156100564:+	FLNA	28681	chrX:153593854:-	ONLY_REF_SPLICE	YES	5787	3140	0	0	0.0213	0.0106	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,LMNA->chr1:156052364-156109880:+,lamin_A/C,FLNA->chrX:153576892-153603006:-,filamin_A	HS888T_FIBROBLAST	0	0	0.0319	FALSE	0	0	0	1	0	FALSE	ACH-000154
HS888T_FIBROBLAST	RP11-444D3.1--SOX5	1	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	1	1	0.86	0.0106	0.0532	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS888T_FIBROBLAST	0.86	1	0.0638	TRUE	274	363	69	150	0	FALSE	ACH-000154
HS888T_FIBROBLAST	RPSAP52--HMGA2	2	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	33	359	0.08	0.01	0.0213	0.0106	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HS888T_FIBROBLAST	0.01	0.08	0.0319	FALSE	0	59	0	125	0	FALSE	ACH-000154
HS888T_FIBROBLAST	ANXA1--RBM39	2	0	ANXA1	5083	chr9:75774339:+	RBM39	20574	chr20:34326939:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	HS888T_FIBROBLAST	1	1	0.0213	TRUE	1	0	1	2	0	TRUE	ACH-000154
HS888T_FIBROBLAST	BNC2--MLLT3	2	0	BNC2	1198	chr9:16870644:-	MLLT3	46652	chr9:20354877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	BNC2->basonuclin_2,chr9:16409501-16870841:-,MLLT3->Oncogene{Bushman},chr9:20341663-20622542:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_3	HS888T_FIBROBLAST	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000154
HS888T_FIBROBLAST	ENTPD7--PRKAA1	2	0	ENTPD7	2642	chr10:101421385:+	PRKAA1	21072	chr5:40775605:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	ENTPD7->chr10:101419263-101465997:+,ectonucleoside_triphosphate_diphosphohydrolase_7,PRKAA1->chr5:40759481-40798476:-,protein_kinase_AMP-activated_catalytic_subunit_alpha_1	HS888T_FIBROBLAST	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000154
HS888T_FIBROBLAST	FMR1--SMARCA1	2	0	FMR1	1280	chrX:146993748:+	SMARCA1	45383	chrX:128582420:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	FMR1->chrX:146993469-147032645:+,fragile_X_mental_retardation_1,SMARCA1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_1,chrX:128580480-128657477:-	HS888T_FIBROBLAST	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000154
HS888T_FIBROBLAST	PTPRS--ANXA2	2	0	PTPRS	4001	chr19:5286061:-	ANXA2	59056	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	PTPRS->chr19:5158506-5340814:-,protein_tyrosine_phosphatase,_receptor_type_S,ANXA2->annexin_A2,chr15:60639333-60695082:-	HS888T_FIBROBLAST	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000154
HS888T_FIBROBLAST	RP1-34H18.1--RP11-781A6.1	2	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	HS888T_FIBROBLAST	1	1	0.0213	TRUE	94	160	11	37	0	FALSE	ACH-000154
HS888T_FIBROBLAST	RPSAP52--FOSL1	2	0	RPSAP52	1132	chr12:66220623:-	FOSL1	7478	chr11:65664477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-	HS888T_FIBROBLAST	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000154
HS888T_FIBROBLAST	RUNX1--ETS2	2	0	RUNX1	21108	chr21:36421139:-	ETS2	47568	chr21:40181959:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,ETS2->ETS_proto-oncogene_2,_transcription_factor,Oncogene{Bushman},chr21:40177231-40196879:+	HS888T_FIBROBLAST	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000154
HS888T_FIBROBLAST	YWHAZ--KLF10	2	0	YWHAZ	2460	chr8:101964157:-	KLF10	23145	chr8:103664625:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_FI:{Skin=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Adipose_-_Visceral_(Omentum)=1},YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta,KLF10->Kruppel-like_factor_10,chr8:103661007-103668130:-	HS888T_FIBROBLAST	1	1	0.0213	TRUE	2	0	0	3	0	FALSE	ACH-000154
HS888T_FIBROBLAST	ZNF736--FAM120B	2	0	ZNF736	8361	chr7:63797360:+	FAM120B	32723	chr6:170704575:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Lymphoid=1,Lung=1},ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	HS888T_FIBROBLAST	1	1	0.0213	TRUE	0	3	0	3	3	TRUE	ACH-000154
HS888T_FIBROBLAST	PRR16--CTD-2334D19.1	1	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	NO	128	0	0.03	1	0.0106	0.0319	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS888T_FIBROBLAST	0.03	1	0.0425	FALSE	1	13	0	24	0	FALSE	ACH-000154
HS888T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.8	0.8	0.0106	0.0319	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS888T_FIBROBLAST	0.8	0.8	0.0425	FALSE	467	2173	244	435	0	FALSE	ACH-000154
HS888T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	1	0.5	0.8	0.0106	0.0319	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS888T_FIBROBLAST	0.5	0.8	0.0425	FALSE	515	4851	409	746	0	FALSE	ACH-000154
HS888T_FIBROBLAST	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	1258	chr12:24715267:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	10	1	0.23	0.75	0.0106	0.0213	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS888T_FIBROBLAST	0.23	0.75	0.0319	TRUE	0	1	1	7	0	FALSE	ACH-000154
HS888T_FIBROBLAST	WDR6--FOSL1	1	2	WDR6	1470	chr3:49044964:+	FOSL1	12830	chr11:65664477:-	ONLY_REF_SPLICE	NO	274	1520	0.01	0	0.0106	0.0213	WDR6->WD_repeat_domain_6,chr3:49044495-49053386:+,FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-	HS888T_FIBROBLAST	0	0.01	0.0319	FALSE	0	0	0	1	0	FALSE	ACH-000154
HS888T_FIBROBLAST	ADAM17--YWHAQ	1	1	ADAM17	1284	chr2:9695638:-	YWHAQ	29763	chr2:9731644:-	ONLY_REF_SPLICE	NO	81	2101	0.02	0	0.0106	0.0106	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[28180],ADAM17->ADAM_metallopeptidase_domain_17,chr2:9628615-9695921:-,YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta	HS888T_FIBROBLAST	0	0.02	0.0212	FALSE	0	4	0	5	2	FALSE	ACH-000154
HS888T_FIBROBLAST	ATL2--HNRNPLL	1	1	ATL2	6688	chr2:38570410:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	YES	82	154	0.02	0.01	0.0106	0.0106	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	HS888T_FIBROBLAST	0.01	0.02	0.0212	FALSE	0	5	0	8	2	FALSE	ACH-000154
HS888T_FIBROBLAST	CTNND1--VIM	1	1	CTNND1	23315	chr11:57582972:+	VIM	37266	chr10:17278293:+	ONLY_REF_SPLICE	YES	267	15771	0.01	0	0.0106	0.0106	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,VIM->chr10:17270258-17279592:+,vimentin	HS888T_FIBROBLAST	0	0.01	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000154
HS888T_FIBROBLAST	DNAJC2--PSMC2	1	1	DNAJC2	1315	chr7:102985006:-	PSMC2	23696	chr7:102994368:+	ONLY_REF_SPLICE	YES	208	448	0.01	0	0.0106	0.0106	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},NEIGHBORS_OVERLAP:-:+:[619],DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-,PSMC2->chr7:102984701-103009842:+,proteasome_26S_subunit,_ATPase_2	HS888T_FIBROBLAST	0	0.01	0.0212	FALSE	0	1	0	3	0	FALSE	ACH-000154
HS888T_FIBROBLAST	FOSB--NFE2L2	1	1	FOSB	1718	chr19:45971970:+	NFE2L2	21937	chr2:178098999:-	ONLY_REF_SPLICE	NO	1912	290	0	0.01	0.0106	0.0106	HGNC_GENEFAM,FOSB->FosB_proto-oncogene,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr19:45971253-45978437:+,NFE2L2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:178092323-178257425:-,nuclear_factor,_erythroid_2_like_2	HS888T_FIBROBLAST	0	0.01	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000154
HS888T_FIBROBLAST	HIC1--KLHL36	1	1	HIC1	2085	chr17:1958532:+	KLHL36	11329	chr16:84684458:+	ONLY_REF_SPLICE	YES	77	6	0.03	0.25	0.0106	0.0106	HGNC_GENEFAM,HIC1->Oncogene{Bushman},chr17:1957448-1962981:+,hypermethylated_in_cancer_1,KLHL36->chr16:84682131-84701292:+,kelch_like_family_member_36	HS888T_FIBROBLAST	0.03	0.25	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000154
HS888T_FIBROBLAST	LINC00578--RP11-114M1.1	1	1	LINC00578	4542	chr3:177347343:+	RP11-114M1.1	12513	chr3:177405190:+	ONLY_REF_SPLICE	YES	29	1	0.06	0.67	0.0106	0.0106	NEIGHBORS_OVERLAP:+:+:[7623],LINC00578->chr3:177159709-177470093:+,long_intergenic_non-protein_coding_RNA_578,RP11-114M1.1->chr3:177401415-177409038:+	HS888T_FIBROBLAST	0.06	0.67	0.0212	FALSE	0	1	0	2	0	FALSE	ACH-000154
HS888T_FIBROBLAST	LINC00578--RP11-114M1.1	1	1	LINC00578	1190	chr3:177159898:+	RP11-114M1.1	11442	chr3:177402732:+	ONLY_REF_SPLICE	NO	30	1	0.06	0.67	0.0106	0.0106	NEIGHBORS_OVERLAP:+:+:[7623],LINC00578->chr3:177159709-177470093:+,long_intergenic_non-protein_coding_RNA_578,RP11-114M1.1->chr3:177401415-177409038:+	HS888T_FIBROBLAST	0.06	0.67	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000154
HS888T_FIBROBLAST	MAFF--CSNK1E	1	1	MAFF	1331	chr22:38598219:+	CSNK1E	16568	chr22:38710174:-	ONLY_REF_SPLICE	NO	229	55	0.01	0.04	0.0106	0.0106	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:+:-:[74179],MAFF->chr22:38597889-38612518:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_F,CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-	HS888T_FIBROBLAST	0.01	0.04	0.0212	FALSE	1	0	0	1	0	FALSE	ACH-000154
HS888T_FIBROBLAST	OAZ1--CIRBP	1	1	OAZ1	1259	chr19:2269743:+	CIRBP	16019	chr19:1270866:+	ONLY_REF_SPLICE	YES	4464	49	0	0.04	0.0106	0.0106	OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein	HS888T_FIBROBLAST	0	0.04	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000154
HS888T_FIBROBLAST	PRSS23--COPB2	1	1	PRSS23	8412	chr11:86534635:+	COPB2	35929	chr3:139090675:-	ONLY_REF_SPLICE	YES	74	563	0.03	0	0.0106	0.0106	PRSS23->chr11:86502101-86663952:+,protease,_serine_23,COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2	HS888T_FIBROBLAST	0	0.03	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000154
HS888T_FIBROBLAST	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0.0106	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HS888T_FIBROBLAST	1	1	0.0212	FALSE	81	155	12	160	0	FALSE	ACH-000154
HS888T_FIBROBLAST	TPM4--KLF2	1	1	TPM4	3429	chr19:16186982:+	KLF2	22779	chr19:16437667:+	ONLY_REF_SPLICE	NO	4071	134	0	0.01	0.0106	0.0106	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Blood=[count:5=pct:2.9],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:2=pct:1.0],Whole_Blood=[count:2=pct:1.5],Esophagus=[count:2=pct:0.5],Blood_Vessel=[count:2=pct:0.5],Small_Intestine=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Lung=[count:1=pct:0.6]},TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4,KLF2->Kruppel-like_factor_2,chr19:16435628-16438685:+	HS888T_FIBROBLAST	0	0.01	0.0212	FALSE	14	17	1	2	0	FALSE	ACH-000154
HS888T_FIBROBLAST	WDR6--CERS2	1	1	WDR6	1470	chr3:49044964:+	CERS2	14497	chr1:150941567:-	ONLY_REF_SPLICE	YES	274	196	0.01	0.01	0.0106	0.0106	WDR6->WD_repeat_domain_6,chr3:49044495-49053386:+,CERS2->ceramide_synthase_2,chr1:150933059-150947479:-	HS888T_FIBROBLAST	0.01	0.01	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000154
HS839T_FIBROBLAST	COL1A2--COL16A1	1258	0	COL1A2	18296	chr7:94045815:+	COL16A1	71320	chr1:32126239:-	ONLY_REF_SPLICE	YES	0	0	1	1	16.6488	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1	HS839T_FIBROBLAST	1	1	16.6488	TRUE	0	2	0	1	1	TRUE	ACH-000180
HS839T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	131	27	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	0	39	1	0.8	1.7337	0.3573	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS839T_FIBROBLAST	0.8	1	2.091	FALSE	65	26	15	9	0	FALSE	ACH-000180
HS839T_FIBROBLAST	TIMM23B--LINC00843	73	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9661	0.3176	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS839T_FIBROBLAST	1	1	1.2837	TRUE	508	994	45	981	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	65	25	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	0	44	1	0.67	0.8602	0.3309	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS839T_FIBROBLAST	0.67	1	1.1911	FALSE	65	26	15	9	0	FALSE	ACH-000180
HS839T_FIBROBLAST	COL1A2--COL16A1	47	1	COL1A2	22079	chr7:94049598:+	COL16A1	71320	chr1:32126239:-	ONLY_REF_SPLICE	NO	9219	296	0.01	0.14	0.622	0.0132	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1	HS839T_FIBROBLAST	0.01	0.14	0.6352	TRUE	0	0	0	2	0	FALSE	ACH-000180
HS839T_FIBROBLAST	TIMM23--RP11-464F9.1	38	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	152	6	0.2	0.87	0.5029	0.0132	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS839T_FIBROBLAST	0.2	0.87	0.5161	TRUE	519	3926	326	965	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RP11-680G10.1--GSE1	28	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.92	0.3706	0.1059	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS839T_FIBROBLAST	0.92	1	0.4765	TRUE	458	1351	185	561	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RP11-680G10.1--GSE1	23	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	10	1	0.74	0.3044	0.0662	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS839T_FIBROBLAST	0.74	1	0.3706	TRUE	465	1949	224	605	0	FALSE	ACH-000180
HS839T_FIBROBLAST	PLXDC1--TAF13	22	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2912	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS839T_FIBROBLAST	1	1	0.2912	TRUE	7	10	0	216	0	FALSE	ACH-000180
HS839T_FIBROBLAST	OR51S1--TP53I11	17	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.225	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HS839T_FIBROBLAST	1	1	0.225	TRUE	402	216	10	229	0	FALSE	ACH-000180
HS839T_FIBROBLAST	MT-ND6--MT-TE	15	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1985	0.0397	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS839T_FIBROBLAST	1	1	0.2382	FALSE	499	1288	110	792	0	FALSE	ACH-000180
HS839T_FIBROBLAST	KANSL1--ARL17B	12	7	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	10	26	0.66	0.42	0.1588	0.0926	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HS839T_FIBROBLAST	0.42	0.66	0.2514	TRUE	181	1564	124	196	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	7	27	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	14416	chr11:121987031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0926	0.3573	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS839T_FIBROBLAST	1	1	0.4499	FALSE	8	1	0	5	0	FALSE	ACH-000180
HS839T_FIBROBLAST	MT-TA--MT-TC	13	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.172	0.0132	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS839T_FIBROBLAST	1	1	0.1852	FALSE	462	80	0	856	0	FALSE	ACH-000180
HS839T_FIBROBLAST	C15orf57--CBX3	11	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	25	31	0.4	0.35	0.1456	0.0794	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS839T_FIBROBLAST	0.35	0.4	0.225	TRUE	267	562	48	632	0	FALSE	ACH-000180
HS839T_FIBROBLAST	MT-ND6--MT-TE	11	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1456	0.0529	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS839T_FIBROBLAST	1	1	0.1985	FALSE	499	1288	110	792	0	FALSE	ACH-000180
HS839T_FIBROBLAST	MT-ND6--MT-TE	8	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1059	0.1191	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS839T_FIBROBLAST	0.94	1	0.225	FALSE	499	1288	110	792	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RP1-34H18.1--NAV3	9	4	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1191	0.0529	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HS839T_FIBROBLAST	1	1	0.172	TRUE	254	575	65	124	0	FALSE	ACH-000180
HS839T_FIBROBLAST	ZNF654--HMGB2	8	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1059	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HS839T_FIBROBLAST	1	1	0.1059	TRUE	0	0	0	518	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RP4-565E6.1--HYDIN	7	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0926	0.0397	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS839T_FIBROBLAST	1	1	0.1323	TRUE	456	1387	91	133	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	5	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.75	0.0662	0.0132	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS839T_FIBROBLAST	0.75	1	0.0794	FALSE	515	4851	409	746	0	FALSE	ACH-000180
HS839T_FIBROBLAST	C15orf57--CBX3	4	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	23	31	0.26	0.21	0.0529	0.0529	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS839T_FIBROBLAST	0.21	0.26	0.1058	TRUE	267	562	48	632	0	FALSE	ACH-000180
HS839T_FIBROBLAST	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS839T_FIBROBLAST	1	1	0.0662	FALSE	462	80	0	856	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	2	10	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	0	39	1	0.24	0.0265	0.1323	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS839T_FIBROBLAST	0.24	1	0.1588	FALSE	40	10	5	8	0	FALSE	ACH-000180
HS839T_FIBROBLAST	PRR16--CTD-2334D19.1	4	1	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	27	0	0.16	1	0.0529	0.0132	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS839T_FIBROBLAST	0.16	1	0.0661	FALSE	21	45	1	60	0	FALSE	ACH-000180
HS839T_FIBROBLAST	ELN--COL1A2	3	3	ELN	19898	chr7:73474330:+	COL1A2	40569	chr7:94039040:+	INCL_NON_REF_SPLICE	YES	2128	9180	0	0	0.0397	0.0397	ELN->Oncogene{Bushman},chr7:73442119-73484237:+,elastin,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS839T_FIBROBLAST	0	0	0.0794	FALSE	0	0	0	1	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	1	10	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	14416	chr11:121987031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0132	0.1323	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS839T_FIBROBLAST	1	1	0.1455	FALSE	3	0	0	3	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	1	10	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	0	44	1	0.2	0.0132	0.1323	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS839T_FIBROBLAST	0.2	1	0.1455	FALSE	40	10	5	8	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0397	0.0265	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS839T_FIBROBLAST	1	1	0.0662	FALSE	407	2205	196	549	0	FALSE	ACH-000180
HS839T_FIBROBLAST	PRR16--CTD-2334D19.1	3	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	67	0	0.06	1	0.0397	0.0132	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS839T_FIBROBLAST	0.06	1	0.0529	FALSE	56	216	12	147	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RP11-166D19.1--DNM3OS	3	0	RP11-166D19.1	5868	chr11:121971082:-	DNM3OS	18442	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0397	0	GTEx_FI:{Ovary=[count:4=pct:7.5],Blood_Vessel=[count:3=pct:0.8],Thyroid=[count:2=pct:1.1],Uterus=[count:1=pct:2.3],Esophagus=[count:1=pct:0.2]},RP11-166D19.1->chr11:121899063-121987031:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	HS839T_FIBROBLAST	1	1	0.0397	TRUE	11	20	1	11	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	3	0	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	26134	chr11:121937142:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0397	0	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS839T_FIBROBLAST	1	1	0.0397	FALSE	17	5	3	5	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0.0397	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS839T_FIBROBLAST	1	1	0.0662	FALSE	275	511	55	178	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.8	0.67	0.0265	0.0265	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS839T_FIBROBLAST	0.67	0.8	0.053	FALSE	467	2173	244	435	0	FALSE	ACH-000180
HS839T_FIBROBLAST	AL136419.6--PTP4A2	2	0	AL136419.6	3579	chr14:24682615:-	PTP4A2	18746	chr1:32385259:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	AL136419.6->chr14:24678852-24685193:-,PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2	HS839T_FIBROBLAST	1	1	0.0265	TRUE	0	0	0	1	0	TRUE	ACH-000180
HS839T_FIBROBLAST	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0265	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS839T_FIBROBLAST	1	1	0.0265	TRUE	477	1352	189	275	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	1	3	RP11-820L6.1	6183	chr11:122162992:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	3	44	0.57	0.08	0.0132	0.0397	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS839T_FIBROBLAST	0.08	0.57	0.0529	FALSE	43	23	12	6	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.8	1	0.0132	0.0397	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS839T_FIBROBLAST	0.8	1	0.0529	FALSE	192	492	57	212	0	FALSE	ACH-000180
HS839T_FIBROBLAST	COL1A2--COL16A1	1	2	COL1A2	29088	chr7:94056607:+	COL16A1	66592	chr1:32131682:-	ONLY_REF_SPLICE	NO	10770	309	0	0.01	0.0132	0.0265	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1	HS839T_FIBROBLAST	0	0.01	0.0397	FALSE	0	0	0	1	0	FALSE	ACH-000180
HS839T_FIBROBLAST	TGFBI--RPL28	1	2	TGFBI	16584	chr5:135396625:+	RPL28	23028	chr19:55897304:+	ONLY_REF_SPLICE	YES	4992	1	0	0.75	0.0132	0.0265	TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	HS839T_FIBROBLAST	0	0.75	0.0397	FALSE	0	0	0	1	0	FALSE	ACH-000180
HS839T_FIBROBLAST	DCN--BGN	1	1	DCN	5185	chr12:91572119:-	BGN	24743	chrX:152770696:+	ONLY_REF_SPLICE	YES	4629	1272	0	0	0.0132	0.0132	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,DCN->chr12:91539025-91576900:-,decorin,BGN->Oncogene{Bushman},biglycan,chrX:152760397-152775012:+	HS839T_FIBROBLAST	0	0	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000180
HS839T_FIBROBLAST	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	9	62	0.18	0.03	0.0132	0.0132	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HS839T_FIBROBLAST	0.03	0.18	0.0264	FALSE	0	59	0	125	0	FALSE	ACH-000180
HS839T_FIBROBLAST	VIM-AS1--CYB5R3	1	1	VIM-AS1	1641	chr10:17271344:-	CYB5R3	13663	chr22:43032852:-	ONLY_REF_SPLICE	YES	3	21	0.4	0.09	0.0132	0.0132	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,CYB5R3->chr22:43013846-43045574:-,cytochrome_b5_reductase_3	HS839T_FIBROBLAST	0.09	0.4	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000180
NCIH2126_LUNG	ARPC1B--MYH16	1675	19	ARPC1B	1533	chr7:98972404:+	MYH16	39155	chr7:98877133:+	ONLY_REF_SPLICE	YES	10	2	0.99	1	14.6783	0.1665	LOCAL_REARRANGEMENT:+:[63119],ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	NCIH2126_LUNG	0.99	1	14.8448	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	ARPC1B--MYH16	190	86	ARPC1B	3540	chr7:98975062:+	MYH16	39155	chr7:98877133:+	ONLY_REF_SPLICE	YES	150	2	0.65	0.99	1.665	0.7536	LOCAL_REARRANGEMENT:+:[63119],ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	NCIH2126_LUNG	0.65	0.99	2.4186	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	ARPC1B--MYH16	186	101	ARPC1B	3556	chr7:98975078:+	MYH16	39155	chr7:98877133:+	ONLY_REF_SPLICE	YES	185	2	0.61	0.99	1.6299	0.8851	LOCAL_REARRANGEMENT:+:[63119],ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	NCIH2126_LUNG	0.61	0.99	2.515	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	TBC1D17--PPP6R1	150	37	TBC1D17	8334	chr19:50388015:+	PPP6R1	28586	chr19:55743579:-	ONLY_REF_SPLICE	YES	56	109	0.77	0.63	1.3145	0.3242	{Klijn_CCL:Lung=1},TBC1D17->TBC1_domain_family_member_17,chr19:50380682-50392005:+,PPP6R1->chr19:55741148-55770363:-,protein_phosphatase_6_regulatory_subunit_1	NCIH2126_LUNG	0.63	0.77	1.6387	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	NSRP1--ATP5F1	124	20	NSRP1	16221	chr17:28508034:+	ATP5F1	24093	chr1:111996833:+	ONLY_REF_SPLICE	YES	47	492	0.75	0.23	1.0866	0.1753	{Klijn_CCL:Lung=1},NSRP1->chr17:28442539-28513493:+,nuclear_speckle_splicing_regulatory_protein_1,ATP5F1->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_B1,chr1:111991486-112005395:+	NCIH2126_LUNG	0.23	0.75	1.2619	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TN	128	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1217	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2126_LUNG	1	1	1.1217	FALSE	369	2501	205	193	0	FALSE	ACH-000785
NCIH2126_LUNG	TIMM23B--LINC00843	116	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0165	0.1753	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2126_LUNG	1	1	1.1918	TRUE	508	994	45	981	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-ND6--MT-TE	70	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6134	0.0526	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2126_LUNG	1	1	0.666	FALSE	499	1288	110	792	0	FALSE	ACH-000785
NCIH2126_LUNG	LENG8--NLRP2	64	17	LENG8	9419	chr19:54969027:+	NLRP2	25609	chr19:55493530:+	ONLY_REF_SPLICE	YES	274	23	0.23	0.78	0.5608	0.149	LENG8->chr19:54960065-54973217:+,leukocyte_receptor_cluster_(LRC)_member_8,NLRP2->NLR_family,_pyrin_domain_containing_2,Oncogene{Bushman},chr19:55464498-55512510:+	NCIH2126_LUNG	0.23	0.78	0.7098	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	TIMM23--RP11-464F9.1	67	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	119	5	0.36	0.93	0.5871	0.0088	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2126_LUNG	0.36	0.93	0.5959	TRUE	519	3926	326	965	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TC	48	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4206	0.0526	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2126_LUNG	1	1	0.4732	FALSE	462	80	0	856	0	FALSE	ACH-000785
NCIH2126_LUNG	NRIP1--AF127936.7	44	5	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.92	1	0.3856	0.0438	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2126_LUNG	0.92	1	0.4294	FALSE	292	1546	117	613	0	FALSE	ACH-000785
NCIH2126_LUNG	OR51S1--TP53I11	40	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3505	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH2126_LUNG	1	1	0.3505	TRUE	402	216	10	229	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-ND6--MT-TE	32	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2804	0.0613	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2126_LUNG	1	1	0.3417	FALSE	499	1288	110	792	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TN	9	85	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0.7449	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2126_LUNG	1	1	0.8238	FALSE	369	2501	205	193	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TN	30	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2629	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2126_LUNG	1	1	0.2629	FALSE	369	2501	205	193	0	FALSE	ACH-000785
NCIH2126_LUNG	FAM21B--GPR98	26	10	FAM21B	17409	chr10:47926172:+	GPR98	129307	chr5:90159574:+	ONLY_REF_SPLICE	YES	9	0	0.8	1	0.2278	0.0876	FAM21B->chr10:47894023-47949412:+,GPR98->chr5:89825161-90460038:+	NCIH2126_LUNG	0.8	1	0.3154	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	CDC123--DHTKD1	26	8	CDC123	6086	chr10:12259466:+	DHTKD1	28554	chr10:12148245:+	ONLY_REF_SPLICE	YES	141	55	0.19	0.38	0.2278	0.0701	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},LOCAL_REARRANGEMENT:+:[72740],CDC123->cell_division_cycle_123,chr10:12237964-12292588:+,DHTKD1->chr10:12110971-12165224:+,dehydrogenase_E1_and_transketolase_domain_containing_1	NCIH2126_LUNG	0.19	0.38	0.2979	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TN	21	25	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.184	0.2191	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2126_LUNG	1	1	0.4031	FALSE	369	2501	205	193	0	FALSE	ACH-000785
NCIH2126_LUNG	NRIP1--AF127936.7	25	9	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	24	0	0.59	1	0.2191	0.0789	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2126_LUNG	0.59	1	0.298	FALSE	125	705	46	456	0	FALSE	ACH-000785
NCIH2126_LUNG	TMEM127--NTNG1	25	9	TMEM127	1857	chr2:96930876:-	NTNG1	20221	chr1:107866904:+	ONLY_REF_SPLICE	YES	33	0	0.51	1	0.2191	0.0789	TMEM127->chr2:96914254-96931732:-,transmembrane_protein_127,NTNG1->chr1:107682629-108026080:+,netrin_G1	NCIH2126_LUNG	0.51	1	0.298	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	PLXDC1--TAF13	26	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2278	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH2126_LUNG	1	1	0.2278	TRUE	7	10	0	216	0	FALSE	ACH-000785
NCIH2126_LUNG	AL589743.1--RP11-536C10.17	25	3	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	31	0	0.47	1	0.2191	0.0263	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	NCIH2126_LUNG	0.47	1	0.2454	TRUE	0	33	0	45	33	FALSE	ACH-000785
NCIH2126_LUNG	MT-ND6--MT-TE	20	23	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.1753	0.2016	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2126_LUNG	0.91	1	0.3769	FALSE	499	1288	110	792	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TN	14	47	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1227	0.4119	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2126_LUNG	1	1	0.5346	FALSE	369	2501	205	193	0	FALSE	ACH-000785
NCIH2126_LUNG	AP000525.9--LA16c-60G3.6	25	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	23	0	0.54	1	0.2191	0.0175	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH2126_LUNG	0.54	1	0.2366	TRUE	0	42	0	133	42	FALSE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TN	9	62	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0.5433	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2126_LUNG	1	1	0.6222	FALSE	369	2501	205	193	0	FALSE	ACH-000785
NCIH2126_LUNG	GPR98--FAM21B	21	10	GPR98	97413	chr5:90151718:+	FAM21B	127310	chr10:47929795:+	ONLY_REF_SPLICE	YES	0	9	1	0.78	0.184	0.0876	GPR98->chr5:89825161-90460038:+,FAM21B->chr10:47894023-47949412:+	NCIH2126_LUNG	0.78	1	0.2716	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	RP11-123O10.4--GRIP1	20	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1753	0.0175	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2126_LUNG	1	1	0.1928	FALSE	416	2512	207	587	0	FALSE	ACH-000785
NCIH2126_LUNG	MUC5AC--MUC6	17	2	MUC5AC	6962	chr11:1159069:+	MUC6	40256	chr11:1015883:-	INCL_NON_REF_SPLICE	YES	35	0	0.35	1	0.149	0.0175	HGNC_GENEFAM,PROTCLUST,MUC5AC->Oncogene{Bushman},chr11:1151580-1222364:+,mucin_5AC,_oligomeric_mucus/gel-forming,MUC6->Oncogene{Bushman},chr11:1012821-1036706:-,mucin_6,_oligomeric_mucus/gel-forming	NCIH2126_LUNG	0.35	1	0.1665	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	RP11-96H19.1--RP11-446N19.1	16	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	1	0.81	0.96	0.1402	0.0526	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2126_LUNG	0.81	0.96	0.1928	FALSE	515	4851	409	746	0	FALSE	ACH-000785
NCIH2126_LUNG	TMEM127--NTNG1	16	6	TMEM127	1126	chr2:96931607:-	NTNG1	20221	chr1:107866904:+	ONLY_REF_SPLICE	YES	51	0	0.3	1	0.1402	0.0526	TMEM127->chr2:96914254-96931732:-,transmembrane_protein_127,NTNG1->chr1:107682629-108026080:+,netrin_G1	NCIH2126_LUNG	0.3	1	0.1928	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TC	17	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.149	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2126_LUNG	1	1	0.149	FALSE	462	80	0	856	0	FALSE	ACH-000785
NCIH2126_LUNG	NRIP1--AF127936.7	13	14	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	33	0	0.45	1	0.1139	0.1227	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2126_LUNG	0.45	1	0.2366	FALSE	164	806	69	479	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-ND6--MT-TE	7	34	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.0613	0.2979	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2126_LUNG	0.91	1	0.3592	FALSE	499	1288	110	792	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TN	8	30	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0.2629	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2126_LUNG	1	1	0.333	FALSE	369	2501	205	193	0	FALSE	ACH-000785
NCIH2126_LUNG	ETFA--BUB1B	13	7	ETFA	10669	chr15:76566753:-	BUB1B	24461	chr15:40457254:+	ONLY_REF_SPLICE	YES	517	77	0.04	0.21	0.1139	0.0613	ETFA->chr15:76507696-76603813:-,electron_transfer_flavoprotein_alpha_subunit,BUB1B->BUB1_mitotic_checkpoint_serine/threonine_kinase_B,Oncogene{Bushman},chr15:40453224-40513337:+	NCIH2126_LUNG	0.04	0.21	0.1752	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	MT-ND6--MT-TE	9	23	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0.2016	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2126_LUNG	1	1	0.2805	FALSE	499	1288	110	792	0	FALSE	ACH-000785
NCIH2126_LUNG	ARPC1B--MYH16	8	25	ARPC1B	2675	chr7:98974197:+	MYH16	39155	chr7:98877133:+	ONLY_REF_SPLICE	YES	69	2	0.32	0.94	0.0701	0.2191	LOCAL_REARRANGEMENT:+:[63119],ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	NCIH2126_LUNG	0.32	0.94	0.2892	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TN	4	41	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0.3593	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2126_LUNG	1	1	0.3944	FALSE	369	2501	205	193	0	FALSE	ACH-000785
NCIH2126_LUNG	CDC123--DHTKD1	13	4	CDC123	6086	chr10:12259466:+	DHTKD1	29705	chr10:12149908:+	ONLY_REF_SPLICE	YES	141	67	0.11	0.2	0.1139	0.0351	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},LOCAL_REARRANGEMENT:+:[72740],CDC123->cell_division_cycle_123,chr10:12237964-12292588:+,DHTKD1->chr10:12110971-12165224:+,dehydrogenase_E1_and_transketolase_domain_containing_1	NCIH2126_LUNG	0.11	0.2	0.149	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TN	3	43	MT-TA	1051	chrM:5605:-	MT-TN	4091	chrM:5708:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0263	0.3768	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2126_LUNG	1	1	0.4031	FALSE	369	2501	205	193	0	FALSE	ACH-000785
NCIH2126_LUNG	BMPR2--AC079354.1	12	6	BMPR2	1615	chr2:203242273:+	AC079354.1	48306	chr2:203019396:+	ONLY_REF_SPLICE	YES	16	0	0.53	1	0.1052	0.0526	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,AC079354.1->chr2:202937978-203062585:+	NCIH2126_LUNG	0.53	1	0.1578	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	TBC1D17--PPP6R1	3	39	TBC1D17	9106	chr19:50388787:+	PPP6R1	28586	chr19:55743579:-	INCL_NON_REF_SPLICE	YES	48	109	0.47	0.28	0.0263	0.3418	{Klijn_CCL:Lung=1},TBC1D17->TBC1_domain_family_member_17,chr19:50380682-50392005:+,PPP6R1->chr19:55741148-55770363:-,protein_phosphatase_6_regulatory_subunit_1	NCIH2126_LUNG	0.28	0.47	0.3681	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TC	11	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0964	0.0438	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2126_LUNG	1	1	0.1402	FALSE	462	80	0	856	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TN	12	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1052	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2126_LUNG	1	1	0.1052	FALSE	369	2501	205	193	0	FALSE	ACH-000785
NCIH2126_LUNG	ARPC1B--MYH16	7	19	ARPC1B	1558	chr7:98972429:+	MYH16	39155	chr7:98877133:+	INCL_NON_REF_SPLICE	YES	45	2	0.37	0.93	0.0613	0.1665	LOCAL_REARRANGEMENT:+:[63119],ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	NCIH2126_LUNG	0.37	0.93	0.2278	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	CDC123--DHTKD1	11	3	CDC123	6086	chr10:12259466:+	DHTKD1	30812	chr10:12154899:+	ONLY_REF_SPLICE	YES	141	58	0.09	0.19	0.0964	0.0263	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},LOCAL_REARRANGEMENT:+:[72740],CDC123->cell_division_cycle_123,chr10:12237964-12292588:+,DHTKD1->chr10:12110971-12165224:+,dehydrogenase_E1_and_transketolase_domain_containing_1	NCIH2126_LUNG	0.09	0.19	0.1227	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	MT-ND6--MT-TE	3	34	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.0263	0.2979	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2126_LUNG	0.93	1	0.3242	FALSE	499	1288	110	792	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TC	9	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0.0613	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2126_LUNG	1	1	0.1402	FALSE	462	80	0	856	0	FALSE	ACH-000785
NCIH2126_LUNG	WHSC1L1--FGFR1	9	2	WHSC1L1	5410	chr8:38205015:-	FGFR1	49314	chr8:38315052:-	ONLY_REF_SPLICE	YES	31	1	0.26	0.92	0.0789	0.0175	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},YOSHIHARA_TCGA_num_samples[BRCA:2],LOCAL_REARRANGEMENT:-:[28866],WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-,FGFR1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr8:38268656-38326352:-,fibroblast_growth_factor_receptor_1	NCIH2126_LUNG	0.26	0.92	0.0964	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	FAM21B--GPR98	8	5	FAM21B	16239	chr10:47922366:+	GPR98	129307	chr5:90159574:+	ONLY_REF_SPLICE	YES	15	0	0.46	1	0.0701	0.0438	FAM21B->chr10:47894023-47949412:+,GPR98->chr5:89825161-90460038:+	NCIH2126_LUNG	0.46	1	0.1139	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TY	9	1	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0.0088	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH2126_LUNG	1	1	0.0877	FALSE	13	214	14	42	0	FALSE	ACH-000785
NCIH2126_LUNG	TXNRD1--RP11-818F20.4	8	5	TXNRD1	16815	chr12:104707095:+	RP11-818F20.4	36886	chr12:104571295:+	ONLY_REF_SPLICE	YES	933	10	0.01	0.57	0.0701	0.0438	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH2126_LUNG	0.01	0.57	0.1139	TRUE	0	0	0	1	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-ATP6--MT-CO1	9	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2126_LUNG	1	1	0.0789	FALSE	183	104	9	328	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-ND6--MT-TE	6	12	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0.1052	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2126_LUNG	1	1	0.1578	FALSE	499	1288	110	792	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TN	9	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2126_LUNG	1	1	0.0789	FALSE	369	2501	205	193	0	FALSE	ACH-000785
NCIH2126_LUNG	PCAT1--RP11-382A18.2	9	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	NCIH2126_LUNG	1	1	0.0789	TRUE	4	84	1	46	0	FALSE	ACH-000785
NCIH2126_LUNG	TMEM127--NTNG1	8	4	TMEM127	1126	chr2:96931607:-	NTNG1	25073	chr1:107937776:+	ONLY_REF_SPLICE	YES	51	8	0.19	0.6	0.0701	0.0351	TMEM127->chr2:96914254-96931732:-,transmembrane_protein_127,NTNG1->chr1:107682629-108026080:+,netrin_G1	NCIH2126_LUNG	0.19	0.6	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	MT-ND6--MT-TE	3	23	MT-ND6	1260	chrM:14414:-	MT-TE	4567	chrM:14701:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0263	0.2016	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2126_LUNG	0.9	1	0.2279	FALSE	499	1288	110	792	0	FALSE	ACH-000785
NCIH2126_LUNG	RP11-96H19.1--RP11-446N19.1	7	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.74	1	0.0613	0.0613	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2126_LUNG	0.74	1	0.1226	FALSE	407	2205	196	549	0	FALSE	ACH-000785
NCIH2126_LUNG	RP11-96H19.1--RP11-446N19.1	7	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	1	0.81	0.93	0.0613	0.0526	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2126_LUNG	0.81	0.93	0.1139	FALSE	467	2173	244	435	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TN	8	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2126_LUNG	1	1	0.0701	FALSE	369	2501	205	193	0	FALSE	ACH-000785
NCIH2126_LUNG	TXNRD1--RP11-818F20.4	5	10	TXNRD1	16816	chr12:104707096:+	RP11-818F20.4	35617	chr12:104565546:+	INCL_NON_REF_SPLICE	YES	945	0	0.02	1	0.0438	0.0876	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH2126_LUNG	0.02	1	0.1314	TRUE	0	0	0	1	0	FALSE	ACH-000785
NCIH2126_LUNG	TXNRD1--RP11-818F20.4	5	10	TXNRD1	16815	chr12:104707095:+	RP11-818F20.4	35622	chr12:104565551:+	ONLY_REF_SPLICE	YES	933	0	0.02	1	0.0438	0.0876	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH2126_LUNG	0.02	1	0.1314	TRUE	0	0	0	1	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-ND6--MT-TE	7	1	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0613	0.0088	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2126_LUNG	1	1	0.0701	FALSE	499	1288	110	792	0	FALSE	ACH-000785
NCIH2126_LUNG	FOCAD--TOPORS-AS1	6	4	FOCAD	39920	chr9:20929595:+	TOPORS-AS1	65781	chr9:32565395:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0.0351	FOCAD->chr9:20658308-20995954:+,focadhesin,TOPORS-AS1->TOPORS_antisense_RNA_1,chr9:32551142-32567003:+	NCIH2126_LUNG	1	1	0.0877	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	MGST1--UBB	7	0	MGST1	5873	chr12:16507204:+	UBB	25603	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0613	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,UBB->chr17:16284112-16286059:+,ubiquitin_B	NCIH2126_LUNG	1	1	0.0613	TRUE	0	0	0	2	0	TRUE	ACH-000785
NCIH2126_LUNG	AP3S1--AC010226.4	6	0	AP3S1	1626	chr5:115177803:+	AC010226.4	19657	chr5:114955765:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0	AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+,AC010226.4->chr5:114937754-114956356:+	NCIH2126_LUNG	1	1	0.0526	TRUE	0	1	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	MT-ATP6--MT-CO1	6	0	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2126_LUNG	1	1	0.0526	FALSE	183	104	9	328	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-ND6--MT-TE	3	12	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0263	0.1052	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2126_LUNG	0.88	1	0.1315	FALSE	499	1288	110	792	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TN	6	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2126_LUNG	1	1	0.0526	FALSE	369	2501	205	193	0	FALSE	ACH-000785
NCIH2126_LUNG	RP11-548L20.1--RP11-79E3.3	6	0	RP11-548L20.1	2265	chr4:34260709:-	RP11-79E3.3	12416	chr4:33949146:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0	NEIGHBORS[81001],RP11-548L20.1->chr4:34122516-34271369:-,RP11-79E3.3->chr4:33777969-34041515:-	NCIH2126_LUNG	1	1	0.0526	FALSE	2	10	2	7	0	FALSE	ACH-000785
NCIH2126_LUNG	NRIP1--AF127936.7	5	3	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	4	24	0.67	0.25	0.0438	0.0263	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2126_LUNG	0.25	0.67	0.0701	FALSE	25	145	6	90	0	FALSE	ACH-000785
NCIH2126_LUNG	AP3S1--AC010226.4	5	2	AP3S1	1626	chr5:115177803:+	AC010226.4	17568	chr5:114938743:+	ONLY_REF_SPLICE	YES	97	0	0.07	1	0.0438	0.0175	AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+,AC010226.4->chr5:114937754-114956356:+	NCIH2126_LUNG	0.07	1	0.0613	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	ARPC1B--MYH16	5	1	ARPC1B	1330	chr7:98972201:+	MYH16	39155	chr7:98877133:+	ONLY_REF_SPLICE	YES	4	2	0.6	0.75	0.0438	0.0088	LOCAL_REARRANGEMENT:+:[63119],ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	NCIH2126_LUNG	0.6	0.75	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	RP11-640M9.1--SEC22B	5	1	RP11-640M9.1	3158	chr1:144519813:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	YES	22	342	0.21	0.02	0.0438	0.0088	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	NCIH2126_LUNG	0.02	0.21	0.0526	TRUE	20	16	6	14	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2126_LUNG	1	1	0.0438	FALSE	499	1288	110	792	0	FALSE	ACH-000785
NCIH2126_LUNG	TSKU--MT-RNR2	5	0	TSKU	6449	chr11:76506968:+	MT-RNR2	12234	chrM:2225:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	TSKU->chr11:76493295-76509198:+,tsukushi,_small_leucine_rich_proteoglycan,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2126_LUNG	1	1	0.0438	FALSE	0	0	0	1	0	FALSE	ACH-000785
NCIH2126_LUNG	RP11-6N13.1--CTD-2374C24.1	4	3	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0351	0.0263	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH2126_LUNG	0.88	1	0.0614	TRUE	5	12	0	42	0	FALSE	ACH-000785
NCIH2126_LUNG	SLC7A5--MT-ND4L	4	3	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2699	0	0	1	0.0351	0.0263	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2126_LUNG	0	1	0.0614	FALSE	0	0	0	23	0	FALSE	ACH-000785
NCIH2126_LUNG	RP11-120D5.1--MID1	4	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	43	1	0.12	0.0351	0.0175	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2126_LUNG	0.12	1	0.0526	FALSE	16	356	14	466	0	FALSE	ACH-000785
NCIH2126_LUNG	TBC1D17--PPP6R1	3	6	TBC1D17	8334	chr19:50388015:+	PPP6R1	28815	chr19:55743350:-	ONLY_REF_SPLICE	YES	56	126	0.14	0.07	0.0263	0.0526	{Klijn_CCL:Lung=1},TBC1D17->TBC1_domain_family_member_17,chr19:50380682-50392005:+,PPP6R1->chr19:55741148-55770363:-,protein_phosphatase_6_regulatory_subunit_1	NCIH2126_LUNG	0.07	0.14	0.0789	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TY	4	1	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0.0088	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH2126_LUNG	1	1	0.0439	FALSE	13	214	14	42	0	FALSE	ACH-000785
NCIH2126_LUNG	WHSC1L1--RP11-675F6.3	4	1	WHSC1L1	5410	chr8:38205015:-	RP11-675F6.3	43482	chr8:38401364:-	ONLY_REF_SPLICE	YES	31	0	0.14	1	0.0351	0.0088	WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-,RP11-675F6.3->chr8:38401170-38410198:-	NCIH2126_LUNG	0.14	1	0.0439	TRUE	0	1	0	1	1	TRUE	ACH-000785
NCIH2126_LUNG	AL589743.1--RP11-536C10.17	3	4	AL589743.1	5091	chr14:19656224:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	227	0	0.03	1	0.0263	0.0351	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	NCIH2126_LUNG	0.03	1	0.0614	TRUE	0	4	0	3	4	TRUE	ACH-000785
NCIH2126_LUNG	AP3S1--AC010226.4	4	0	AP3S1	1626	chr5:115177803:+	AC010226.4	18728	chr5:114954836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+,AC010226.4->chr5:114937754-114956356:+	NCIH2126_LUNG	1	1	0.0351	TRUE	0	1	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	CCDC122--ENOX1	4	0	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	NCIH2126_LUNG	1	1	0.0351	FALSE	39	52	2	34	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2126_LUNG	1	1	0.0351	FALSE	183	104	9	328	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2126_LUNG	1	1	0.0351	FALSE	183	104	9	328	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2126_LUNG	1	1	0.0351	FALSE	183	104	9	328	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-ND6--MT-TE	3	4	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0.0351	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2126_LUNG	1	1	0.0614	FALSE	499	1288	110	792	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2126_LUNG	1	1	0.0351	FALSE	369	2501	205	193	0	FALSE	ACH-000785
NCIH2126_LUNG	WTAPP1--RUVBL1	4	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	NCIH2126_LUNG	1	1	0.0351	TRUE	9	252	6	66	0	FALSE	ACH-000785
NCIH2126_LUNG	AP000525.9--LA16c-60G3.6	3	3	AP000525.9	5082	chr22:16186811:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	62	0	0.09	1	0.0263	0.0263	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH2126_LUNG	0.09	1	0.0526	TRUE	0	3	0	6	3	TRUE	ACH-000785
NCIH2126_LUNG	RP11-6N13.1--CTD-2374C24.1	3	3	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0263	0.0263	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH2126_LUNG	0.86	1	0.0526	TRUE	5	4	0	46	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-TA--MT-TY	3	2	MT-TA	1061	chrM:5595:-	MT-TY	4031	chrM:5930:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0.0175	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH2126_LUNG	1	1	0.0438	FALSE	13	214	14	42	0	FALSE	ACH-000785
NCIH2126_LUNG	NRIP1--AF127936.7	2	5	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	24	24	0.23	0.23	0.0175	0.0438	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2126_LUNG	0.23	0.23	0.0613	FALSE	7	44	2	41	0	FALSE	ACH-000785
NCIH2126_LUNG	RCOR1--TECPR2	3	1	RCOR1	7307	chr14:103177350:+	TECPR2	21548	chr14:102873675:+	ONLY_REF_SPLICE	YES	77	22	0.05	0.15	0.0263	0.0088	LOCAL_REARRANGEMENT:+:[90180],RCOR1->REST_corepressor_1,chr14:103058998-103196913:+,TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2	NCIH2126_LUNG	0.05	0.15	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	AP3S1--AC010226.4	3	0	AP3S1	3132	chr5:115188711:+	AC010226.4	18728	chr5:114954836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+,AC010226.4->chr5:114937754-114956356:+	NCIH2126_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	LARP4--RGS6	3	0	LARP4	14445	chr12:50834332:+	RGS6	37621	chr14:72921236:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+,RGS6->chr14:72399156-73030654:+,regulator_of_G-protein_signaling_6	NCIH2126_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1261	chrM:8787:+	MT-CO1	4998	chrM:6220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2126_LUNG	1	1	0.0263	FALSE	183	104	9	328	0	FALSE	ACH-000785
NCIH2126_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2126_LUNG	1	1	0.0263	FALSE	499	1288	110	792	0	FALSE	ACH-000785
NCIH2126_LUNG	SLC7A5--PSCA	3	0	SLC7A5	12676	chr16:87865533:-	PSCA	20605	chr8:143763637:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,PSCA->Oncogene{Bushman},chr8:143751726-143764142:+,prostate_stem_cell_antigen	NCIH2126_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	5	0	0.62	1	0.0088	0.0613	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2126_LUNG	0.62	1	0.0701	FALSE	275	511	55	178	0	FALSE	ACH-000785
NCIH2126_LUNG	EHD4--CA12	2	2	EHD4	3595	chr15:42235265:-	CA12	16912	chr15:63667877:-	ONLY_REF_SPLICE	YES	33	2	0.11	0.67	0.0175	0.0175	EHD4->EH_domain_containing_4,chr15:42190950-42264776:-,CA12->carbonic_anhydrase_12,chr15:63613577-63674360:-	NCIH2126_LUNG	0.11	0.67	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	TMEM127--NTNG1	1	6	TMEM127	1857	chr2:96930876:-	NTNG1	25073	chr1:107937776:+	ONLY_REF_SPLICE	YES	33	8	0.17	0.47	0.0088	0.0526	TMEM127->chr2:96914254-96931732:-,transmembrane_protein_127,NTNG1->chr1:107682629-108026080:+,netrin_G1	NCIH2126_LUNG	0.17	0.47	0.0614	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	EHBP1--COMMD1	2	1	EHBP1	15845	chr2:63101667:+	COMMD1	43254	chr2:62227836:+	ONLY_REF_SPLICE	YES	21	60	0.12	0.05	0.0175	0.0088	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,COMMD1->chr2:62115859-62374382:+,copper_metabolism_domain_containing_1	NCIH2126_LUNG	0.05	0.12	0.0263	TRUE	0	0	0	1	0	FALSE	ACH-000785
NCIH2126_LUNG	NRIP1--AF127936.7	1	5	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	33	24	0.15	0.2	0.0088	0.0438	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2126_LUNG	0.15	0.2	0.0526	FALSE	8	57	1	47	0	FALSE	ACH-000785
NCIH2126_LUNG	BAIAP2L2--CSNK1E	2	0	BAIAP2L2	3553	chr22:38503859:-	CSNK1E	18062	chr22:38757565:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	BAIAP2L2->BAI1_associated_protein_2_like_2,chr22:38480896-38506677:-,CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-	NCIH2126_LUNG	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	C16orf89--AKAP13	2	0	C16orf89	6037	chr16:5106054:-	AKAP13	35467	chr15:86182605:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	C16orf89->chr16:5094123-5116111:-,chromosome_16_open_reading_frame_89,AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+	NCIH2126_LUNG	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	CDC123--DHTKD1	2	0	CDC123	6086	chr10:12259466:+	DHTKD1	31977	chr10:12159672:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},LOCAL_REARRANGEMENT:+:[72740],CDC123->cell_division_cycle_123,chr10:12237964-12292588:+,DHTKD1->chr10:12110971-12165224:+,dehydrogenase_E1_and_transketolase_domain_containing_1	NCIH2126_LUNG	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	CMTM8--CMTM7	2	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	NCIH2126_LUNG	1	1	0.0175	FALSE	118	557	29	88	0	FALSE	ACH-000785
NCIH2126_LUNG	GPRC5A--CDKN1B	2	0	GPRC5A	4190	chr12:13062105:+	CDKN1B	18277	chr12:12871759:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	GPRC5A->G_protein-coupled_receptor_class_C_group_5_member_A,chr12:13043716-13070871:+,CDKN1B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:12867992-12875305:+,cyclin-dependent_kinase_inhibitor_1B	NCIH2126_LUNG	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	KLHL2--CPE	2	0	KLHL2	1285	chr4:166129054:+	CPE	34029	chr4:166403394:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	NEIGHBORS[38038],KLHL2->chr4:166128770-166244308:+,kelch_like_family_member_2,CPE->carboxypeptidase_E,chr4:166282346-166419472:+	NCIH2126_LUNG	1	1	0.0175	FALSE	0	0	0	1	0	FALSE	ACH-000785
NCIH2126_LUNG	MB21D2--FGF12	2	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	NCIH2126_LUNG	1	1	0.0175	FALSE	0	17	0	46	0	FALSE	ACH-000785
NCIH2126_LUNG	PTPRA--HP1BP3	2	0	PTPRA	5597	chr20:2928670:+	HP1BP3	31817	chr1:21107033:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	NCIH2126_LUNG	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	TXNRD1--PRRC2C	2	0	TXNRD1	16815	chr12:104707095:+	PRRC2C	50062	chr1:171504567:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C	NCIH2126_LUNG	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	LENG8--NLRP2	1	3	LENG8	9419	chr19:54969027:+	NLRP2	30996	chr19:55501390:+	ONLY_REF_SPLICE	YES	274	76	0.01	0.05	0.0088	0.0263	LENG8->chr19:54960065-54973217:+,leukocyte_receptor_cluster_(LRC)_member_8,NLRP2->NLR_family,_pyrin_domain_containing_2,Oncogene{Bushman},chr19:55464498-55512510:+	NCIH2126_LUNG	0.01	0.05	0.0351	FALSE	0	0	0	1	0	FALSE	ACH-000785
NCIH2126_LUNG	AP3S1--AC010226.4	1	2	AP3S1	3132	chr5:115188711:+	AC010226.4	17568	chr5:114938743:+	ONLY_REF_SPLICE	YES	105	0	0.03	1	0.0088	0.0175	AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+,AC010226.4->chr5:114937754-114956356:+	NCIH2126_LUNG	0.03	1	0.0263	TRUE	0	0	0	1	0	FALSE	ACH-000785
NCIH2126_LUNG	WHSC1L1--FGFR1	1	2	WHSC1L1	5410	chr8:38205015:-	FGFR1	47016	chr8:38318773:-	ONLY_REF_SPLICE	YES	31	0	0.09	1	0.0088	0.0175	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},YOSHIHARA_TCGA_num_samples[BRCA:2],LOCAL_REARRANGEMENT:-:[28866],WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-,FGFR1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr8:38268656-38326352:-,fibroblast_growth_factor_receptor_1	NCIH2126_LUNG	0.09	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000785
NCIH2126_LUNG	CDC123--DHTKD1	1	1	CDC123	3883	chr10:12252321:+	DHTKD1	30812	chr10:12154899:+	ONLY_REF_SPLICE	YES	164	58	0.01	0.03	0.0088	0.0088	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},LOCAL_REARRANGEMENT:+:[72740],CDC123->cell_division_cycle_123,chr10:12237964-12292588:+,DHTKD1->chr10:12110971-12165224:+,dehydrogenase_E1_and_transketolase_domain_containing_1	NCIH2126_LUNG	0.01	0.03	0.0176	FALSE	0	0	0	1	0	FALSE	ACH-000785
NCIH2126_LUNG	MYO10--BASP1	1	1	MYO10	4048	chr5:16877718:-	BASP1	57021	chr5:17275317:+	ONLY_REF_SPLICE	YES	90	1542	0.02	0	0.0088	0.0088	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},MYO10->chr5:16665395-16936372:-,myosin_X,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	NCIH2126_LUNG	0	0.02	0.0176	FALSE	1	0	0	2	0	FALSE	ACH-000785
NCIH2126_LUNG	VAPA--RAB31	1	1	VAPA	1334	chr18:9914332:+	RAB31	35016	chr18:9845579:+	ONLY_REF_SPLICE	YES	370	97	0.01	0.02	0.0088	0.0088	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Adrenal_Gland=1,Whole_Blood=1},{Klijn_CCL:Lung=1,Head-Neck=1},LOCAL_REARRANGEMENT:+:[51451],VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+	NCIH2126_LUNG	0.01	0.02	0.0176	FALSE	3	3	0	4	0	FALSE	ACH-000785
NCIH2126_LUNG	VAPA--RAB31	1	1	VAPA	1334	chr18:9914332:+	RAB31	38499	chr18:9859225:+	ONLY_REF_SPLICE	NO	370	120	0.01	0.02	0.0088	0.0088	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Adrenal_Gland=1,Whole_Blood=1},{Klijn_CCL:Lung=1,Head-Neck=1},LOCAL_REARRANGEMENT:+:[51451],VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+	NCIH2126_LUNG	0.01	0.02	0.0176	FALSE	0	1	0	3	0	FALSE	ACH-000785
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	147	1	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.7125	0.0116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	1.7241	FALSE	369	2501	205	193	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	ABCA13--C7orf57	94	74	ABCA13	2189	chr7:48232649:+	C7orf57	91605	chr7:48092297:+	ONLY_REF_SPLICE	YES	18	2	0.9	0.99	1.0951	0.8621	ABCA13->ATP_binding_cassette_subfamily_A_member_13,chr7:48211055-48687092:+,C7orf57->chr7:48075108-48100901:+,chromosome_7_open_reading_frame_57	SCC25_UPPER_AERODIGESTIVE_TRACT	0.9	0.99	1.9572	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	72	11	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8388	0.1281	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.9669	FALSE	462	80	0	856	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	69	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8038	0.0699	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.8737	FALSE	499	1288	110	792	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	45	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5242	0.1631	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.6873	TRUE	508	994	45	981	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	29	69	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3378	0.8038	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	1.1416	FALSE	369	2501	205	193	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	CTTN--SHANK2	41	15	CTTN	15994	chr11:70275305:+	SHANK2	70347	chr11:70338570:-	ONLY_REF_SPLICE	YES	1355	16	0.04	0.78	0.4776	0.1747	LOCAL_INVERSION:+:-:[31271],CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	SCC25_UPPER_AERODIGESTIVE_TRACT	0.04	0.78	0.6523	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	ABCA13--C7orf57	30	45	ABCA13	2189	chr7:48232649:+	C7orf57	91653	chr7:48092345:+	ONLY_REF_SPLICE	YES	18	4	0.81	0.95	0.3495	0.5242	ABCA13->ATP_binding_cassette_subfamily_A_member_13,chr7:48211055-48687092:+,C7orf57->chr7:48075108-48100901:+,chromosome_7_open_reading_frame_57	SCC25_UPPER_AERODIGESTIVE_TRACT	0.81	0.95	0.8737	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	14	106	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1631	1.2349	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	1.398	FALSE	369	2501	205	193	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	27	37	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3145	0.431	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.7455	FALSE	369	2501	205	193	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	29	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3378	0.1864	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.5242	FALSE	499	1288	110	792	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	CTTN--SHANK2	25	19	CTTN	15994	chr11:70275305:+	SHANK2	67299	chr11:70346695:-	ONLY_REF_SPLICE	YES	1355	17	0.03	0.72	0.2912	0.2213	LOCAL_INVERSION:+:-:[31271],CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	SCC25_UPPER_AERODIGESTIVE_TRACT	0.03	0.72	0.5125	TRUE	0	0	0	1	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	29	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3378	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.3378	FALSE	369	2501	205	193	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	28	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	261	4	0.1	0.88	0.3262	0.0116	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SCC25_UPPER_AERODIGESTIVE_TRACT	0.1	0.88	0.3378	TRUE	519	3926	326	965	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	25	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2912	0.0699	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.3611	FALSE	499	1288	110	792	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	12	56	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1398	0.6524	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.7922	FALSE	369	2501	205	193	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	KRT5--MT-CO3	24	0	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2796	0	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.2796	FALSE	0	0	0	18	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	13	29	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1514	0.3378	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.4892	FALSE	369	2501	205	193	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	7	44	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0.5126	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.5941	FALSE	499	1288	110	792	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	14	13	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1631	0.1514	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.3145	FALSE	462	80	0	856	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	49	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0.5708	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.6057	FALSE	369	2501	205	193	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	PLXDC1--TAF13	15	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1747	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.1747	TRUE	7	10	0	216	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	8	27	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0932	0.3145	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.4077	FALSE	499	1288	110	792	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	8	24	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0932	0.2796	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.3728	FALSE	499	1288	110	792	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	13	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1514	0.0116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.163	FALSE	369	2501	205	193	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	12	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	5	1	0.76	0.1398	0.0466	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SCC25_UPPER_AERODIGESTIVE_TRACT	0.76	1	0.1864	TRUE	465	1949	224	605	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	11	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1281	0.0349	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.163	FALSE	416	2512	207	587	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	29	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0.3378	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.3727	FALSE	499	1288	110	792	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	6	14	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0.1631	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.233	FALSE	462	80	0	856	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	20	MT-ND6	1053	chrM:14621:-	MT-TE	4526	chrM:14742:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0.233	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.2679	FALSE	499	1288	110	792	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	16	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0.1864	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.233	FALSE	499	1288	110	792	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	19	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.0349	0.2213	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC25_UPPER_AERODIGESTIVE_TRACT	0.81	1	0.2562	FALSE	499	1288	110	792	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	18	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	165	0	0.11	1	0.0349	0.2097	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC25_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.2446	FALSE	499	1288	110	792	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	DNASE2--MAST1	5	9	DNASE2	1667	chr19:12991616:-	MAST1	26434	chr19:12984138:+	ONLY_REF_SPLICE	YES	234	2	0.06	0.88	0.0582	0.1048	LOCAL_INVERSION:-:+:[260],DNASE2->chr19:12986025-12992282:-,deoxyribonuclease_II,_lysosomal,MAST1->chr19:12944765-12985765:+,microtubule_associated_serine/threonine_kinase_1	SCC25_UPPER_AERODIGESTIVE_TRACT	0.06	0.88	0.163	TRUE	0	1	0	1	1	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	7	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0.0116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0931	FALSE	462	80	0	856	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	7	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0815	FALSE	499	1288	110	792	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	6	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0699	0.0466	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SCC25_UPPER_AERODIGESTIVE_TRACT	0.91	1	0.1165	TRUE	458	1351	185	561	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	APP--MT-ND2	6	1	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	1431	922	0	0.01	0.0699	0.0116	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SCC25_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0815	FALSE	0	1	0	51	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	13	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0.1514	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.1863	FALSE	462	80	0	856	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	13	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0.1514	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.1863	FALSE	462	80	0	856	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	CTB-36O1.7--MTATP6P1	6	0	CTB-36O1.7	1656	chr5:134259084:-	MTATP6P1	5028	chr1:569356:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	GTEx_FI:{Heart=[count:4=pct:1.6],Brain=[count:3=pct:0.5],Liver=[count:1=pct:0.8]},CTB-36O1.7->chr5:134258993-134259739:-,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0699	TRUE	8	0	0	2	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	DYSF--ZNF638	5	4	DYSF	12732	chr2:71748034:+	ZNF638	92477	chr2:71631000:+	ONLY_REF_SPLICE	YES	14	36	0.39	0.2	0.0582	0.0466	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[18653],DYSF->chr2:71680852-71913898:+,dysferlin,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	SCC25_UPPER_AERODIGESTIVE_TRACT	0.2	0.39	0.1048	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0699	FALSE	499	1288	110	792	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MTATP6P1--MTND2P28	4	6	MTATP6P1	1133	chr1:569208:+	MTND2P28	4695	chr1:565033:+	INCL_NON_REF_SPLICE	YES	3142	0	0	1	0.0466	0.0699	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SCC25_UPPER_AERODIGESTIVE_TRACT	0	1	0.1165	TRUE	20	3	0	12	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	RCN3--FLT3LG	4	6	RCN3	6734	chr19:50046009:+	FLT3LG	13700	chr19:49979402:+	ONLY_REF_SPLICE	YES	534	28	0.02	0.26	0.0466	0.0699	LOCAL_REARRANGEMENT:+:[41387],RCN3->chr19:50030875-50050219:+,reticulocalbin_3,FLT3LG->chr19:49977464-49989488:+,fms_related_tyrosine_kinase_3_ligand	SCC25_UPPER_AERODIGESTIVE_TRACT	0.02	0.26	0.1165	TRUE	0	0	0	1	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	KRT5--MT-CO3	5	0	KRT5	1489	chr12:52913983:-	MT-CO3	10505	chrM:9598:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0582	FALSE	0	0	0	18	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	XXbac-BPG252P9.9--IFI27	5	0	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0582	TRUE	0	2	0	13	2	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	RPSAP52--HMGA2	4	3	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	33	232	0.17	0.03	0.0466	0.0349	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SCC25_UPPER_AERODIGESTIVE_TRACT	0.03	0.17	0.0815	FALSE	0	59	0	125	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	ILF3-AS1--KRT24	4	1	ILF3-AS1	1126	chr19:10764395:-	KRT24	7656	chr17:38858185:-	INCL_NON_REF_SPLICE	YES	42	0	0.11	1	0.0466	0.0116	ILF3-AS1->ILF3_antisense_RNA_1_(head_to_head),chr19:10762538-10764520:-,KRT24->chr17:38854243-38860002:-,keratin_24	SCC25_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-TW--MT-ND2	4	1	MT-TW	1005	chrM:5516:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	221	1	0.02	0.0466	0.0116	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SCC25_UPPER_AERODIGESTIVE_TRACT	0.02	1	0.0582	FALSE	14	0	0	19	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0466	FALSE	499	1288	110	792	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	4	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0466	FALSE	369	2501	205	193	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	PABPC1--KRT14	4	0	PABPC1	2002	chr8:101734036:-	KRT14	18384	chr17:39743147:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	GTEx&tcga_normals:1/3694=0.03%,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,KRT14->chr17:39738531-39743173:-,keratin_14	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0466	TRUE	0	0	0	4	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	2	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.0349	0.0233	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC25_UPPER_AERODIGESTIVE_TRACT	0.71	1	0.0582	FALSE	499	1288	110	792	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MTATP6P1--MTND2P28	3	2	MTATP6P1	1415	chr1:569490:+	MTND2P28	5466	chr1:565804:+	INCL_NON_REF_SPLICE	YES	4361	117	0	0.04	0.0349	0.0233	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SCC25_UPPER_AERODIGESTIVE_TRACT	0	0.04	0.0582	FALSE	20	3	0	12	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	RP11-640M9.1--SEC22B	3	2	RP11-640M9.1	3158	chr1:144519813:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	YES	38	205	0.12	0.02	0.0349	0.0233	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SCC25_UPPER_AERODIGESTIVE_TRACT	0.02	0.12	0.0582	TRUE	20	16	6	14	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	NCOR2--UBC	3	1	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	100	65	0.04	0.06	0.0349	0.0116	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SCC25_UPPER_AERODIGESTIVE_TRACT	0.04	0.06	0.0465	TRUE	52	148	13	33	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	RHOD--C11orf86	3	1	RHOD	1217	chr11:66824505:+	C11orf86	9798	chr11:66743651:+	ONLY_REF_SPLICE	YES	122	3	0.03	0.57	0.0349	0.0116	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[79814],RHOD->chr11:66824289-66839484:+,ras_homolog_family_member_D,C11orf86->chr11:66742748-66744475:+,chromosome_11_open_reading_frame_86	SCC25_UPPER_AERODIGESTIVE_TRACT	0.03	0.57	0.0465	TRUE	0	0	0	1	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	F3--SPG7	2	4	F3	1264	chr1:95007093:-	SPG7	29909	chr16:89611056:+	ONLY_REF_SPLICE	YES	4209	44	0	0.12	0.0233	0.0466	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Head-Neck=2,Breast=1},F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SCC25_UPPER_AERODIGESTIVE_TRACT	0	0.12	0.0699	FALSE	0	0	0	8	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0349	FALSE	499	1288	110	792	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0349	FALSE	292	1546	117	613	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	SMARCA4--BSPH1	3	0	SMARCA4	15302	chr19:11107220:+	BSPH1	51709	chr19:48471466:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,BSPH1->binder_of_sperm_protein_homolog_1,chr19:48471303-48495427:-	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	RCN3--FLT3LG	1	6	RCN3	6734	chr19:50046009:+	FLT3LG	12159	chr19:49977860:+	ONLY_REF_SPLICE	YES	534	0	0.01	1	0.0116	0.0699	LOCAL_REARRANGEMENT:+:[41387],RCN3->chr19:50030875-50050219:+,reticulocalbin_3,FLT3LG->chr19:49977464-49989488:+,fms_related_tyrosine_kinase_3_ligand	SCC25_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.0815	FALSE	0	0	0	1	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	GNGT1--AC002076.10	2	0	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	FALSE	0	28	0	37	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	MATR3--CTNNA1	2	0	MATR3	9772	chr5:138629494:+	CTNNA1	45982	chr5:138145727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	3	14	0	14	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	RCN3--FLT3LG	1	4	RCN3	5534	chr19:50042436:+	FLT3LG	12159	chr19:49977860:+	ONLY_REF_SPLICE	YES	346	0	0.01	1	0.0116	0.0466	LOCAL_REARRANGEMENT:+:[41387],RCN3->chr19:50030875-50050219:+,reticulocalbin_3,FLT3LG->chr19:49977464-49989488:+,fms_related_tyrosine_kinase_3_ligand	SCC25_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.0582	FALSE	0	0	0	1	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	FALSE	16	356	14	466	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	FALSE	93	270	15	244	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	RP11-550I24.2--PMEPA1	2	0	RP11-550I24.2	1167	chr3:156893178:+	PMEPA1	17907	chr20:56234753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	RP11-550I24.2->chr3:156893012-157099054:+,PMEPA1->Oncogene{Bushman},chr20:56223448-56286592:-,prostate_transmembrane_protein,_androgen_induced_1	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	RP11-640M9.1--SEC22B	2	0	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	20	16	6	14	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	STX16--VAPB	2	0	STX16	9005	chr20:57248767:+	VAPB	26345	chr20:57019133:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx&tcga_normals:1/3694=0.03%,STX16->chr20:57226328-57254582:+,syntaxin_16,VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	ZNRD1-AS1--FYN	2	0	ZNRD1-AS1	11211	chr6:29989444:-	FYN	61721	chr6:111983150:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ZNRD1-AS1->chr6:29968788-30029417:-,FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-	SCC25_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	AL021546.6--TRIAP1	1	1	AL021546.6	1324	chr12:120876324:+	TRIAP1	9149	chr12:120882758:-	ONLY_REF_SPLICE	YES	4	72	0.33	0.03	0.0116	0.0116	NEIGHBORS_OVERLAP:+:-:[2451],AL021546.6->chr12:120876001-120897809:+,TRIAP1->Oncogene{Bushman},TP53_regulated_inhibitor_of_apoptosis_1,chr12:120881764-120884215:-	SCC25_UPPER_AERODIGESTIVE_TRACT	0.03	0.33	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	EHF--PDHX	1	1	EHF	1136	chr11:34642775:+	PDHX	19650	chr11:34952951:+	ONLY_REF_SPLICE	YES	113	92	0.02	0.02	0.0116	0.0116	EHF->ETS_homologous_factor,chr11:34642640-34682604:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SCC25_UPPER_AERODIGESTIVE_TRACT	0.02	0.02	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	25	1	0.07	0.0116	0.0116	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SCC25_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.0232	TRUE	64	13	3	59	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	SDCCAG8--GNAS	1	1	SDCCAG8	18774	chr1:243507633:+	GNAS	47085	chr20:57470667:+	ONLY_REF_SPLICE	YES	40	523	0.05	0	0.0116	0.0116	SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SCC25_UPPER_AERODIGESTIVE_TRACT	0	0.05	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	STRN3--CLEC4A	1	1	STRN3	8804	chr14:31404369:-	CLEC4A	28833	chr12:8288181:+	ONLY_REF_SPLICE	NO	67	0	0.03	1	0.0116	0.0116	STRN3->chr14:31363005-31495607:-,striatin_3,CLEC4A->C-type_lectin_domain_family_4_member_A,chr12:8276228-8291203:+	SCC25_UPPER_AERODIGESTIVE_TRACT	0.03	1	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	SYT1--ZDHHC17	1	1	SYT1	11895	chr12:79441142:+	ZDHHC17	33834	chr12:77199097:+	ONLY_REF_SPLICE	NO	5	39	0.29	0.05	0.0116	0.0116	SYT1->chr12:79257773-79845788:+,synaptotagmin_1,ZDHHC17->chr12:77157368-77247476:+,zinc_finger_DHHC-type_containing_17	SCC25_UPPER_AERODIGESTIVE_TRACT	0.05	0.29	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000188
SCC25_UPPER_AERODIGESTIVE_TRACT	TELO2--BAIAP3	1	1	TELO2	5856	chr16:1549334:+	BAIAP3	26255	chr16:1394023:+	ONLY_REF_SPLICE	YES	91	3	0.02	0.4	0.0116	0.0116	TELO2->chr16:1543345-1560458:+,telomere_maintenance_2,BAIAP3->BAI1_associated_protein_3,chr16:1383602-1399439:+	SCC25_UPPER_AERODIGESTIVE_TRACT	0.02	0.4	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000188
RERFLCMS_LUNG	AP003900.6--AC008132.1	94	10	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	2	0	0.98	1	1.1872	0.1263	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	RERFLCMS_LUNG	0.98	1	1.3135	TRUE	0	0	0	25	0	FALSE	ACH-000062
RERFLCMS_LUNG	TIMM23B--LINC00843	82	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0357	0.1642	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RERFLCMS_LUNG	1	1	1.1999	TRUE	508	994	45	981	0	FALSE	ACH-000062
RERFLCMS_LUNG	TIMM23--RP11-464F9.1	42	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	187	1	0.19	0.98	0.5305	0.0126	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RERFLCMS_LUNG	0.19	0.98	0.5431	TRUE	519	3926	326	965	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-TA--MT-TC	30	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3789	0.0379	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCMS_LUNG	1	1	0.4168	FALSE	462	80	0	856	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND6--MT-TE	24	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3031	0.0253	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCMS_LUNG	1	1	0.3284	FALSE	499	1288	110	792	0	FALSE	ACH-000062
RERFLCMS_LUNG	CPNE7--RPL13	22	9	CPNE7	11047	chr16:89656359:+	RPL13	20919	chr16:89628743:+	ONLY_REF_SPLICE	YES	14	2273	0.69	0.01	0.2779	0.1137	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[11226],CPNE7->chr16:89642176-89663654:+,copine_7,RPL13->chr16:89627065-89630950:+,ribosomal_protein_L13	RERFLCMS_LUNG	0.01	0.69	0.3916	TRUE	0	0	0	1	0	FALSE	ACH-000062
RERFLCMS_LUNG	AP003900.6--AC008132.1	20	6	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	2	0	0.93	1	0.2526	0.0758	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	RERFLCMS_LUNG	0.93	1	0.3284	TRUE	0	0	0	16	0	TRUE	ACH-000062
RERFLCMS_LUNG	MT-ND6--MT-TE	13	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1642	0.2021	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCMS_LUNG	0.97	1	0.3663	FALSE	499	1288	110	792	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-ATP8	13	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18821	5	0	0.74	0.1642	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCMS_LUNG	0	0.74	0.1768	FALSE	231	205	14	283	0	FALSE	ACH-000062
RERFLCMS_LUNG	MYL9--DLGAP4	9	13	MYL9	2288	chr20:35173471:+	DLGAP4	10495	chr20:35060049:+	ONLY_REF_SPLICE	YES	416	0	0.05	1	0.1137	0.1642	LOCAL_REARRANGEMENT:+:[12847],MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,DLGAP4->chr20:34894258-35157040:+,discs_large_homolog_associated_protein_4	RERFLCMS_LUNG	0.05	1	0.2779	TRUE	0	0	0	1	0	TRUE	ACH-000062
RERFLCMS_LUNG	RP11-96H19.1--RP11-446N19.1	10	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.1263	0.0884	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCMS_LUNG	0.89	1	0.2147	FALSE	407	2205	196	549	0	FALSE	ACH-000062
RERFLCMS_LUNG	RP11-123O10.4--GRIP1	11	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1389	0.0126	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RERFLCMS_LUNG	1	1	0.1515	FALSE	416	2512	207	587	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-ATP8	11	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1389	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCMS_LUNG	1	1	0.1389	FALSE	230	193	14	283	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND6--MT-TE	10	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1263	0.0379	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCMS_LUNG	1	1	0.1642	FALSE	499	1288	110	792	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-CO2	9	4	MT-ND4	1496	chrM:11255:+	MT-CO2	5511	chrM:7718:+	INCL_NON_REF_SPLICE	YES	20766	6247	0	0	0.1137	0.0505	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCMS_LUNG	0	0	0.1642	FALSE	5	1	0	19	0	FALSE	ACH-000062
RERFLCMS_LUNG	NRIP1--AF127936.7	9	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.1137	0.0379	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFLCMS_LUNG	0.86	1	0.1516	FALSE	292	1546	117	613	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-ATP8	9	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1137	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCMS_LUNG	1	1	0.1137	FALSE	230	198	14	283	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND6--MT-TE	5	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0.1768	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCMS_LUNG	1	1	0.24	FALSE	499	1288	110	792	0	FALSE	ACH-000062
RERFLCMS_LUNG	C15orf57--CBX3	7	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	42	47	0.22	0.2	0.0884	0.0632	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RERFLCMS_LUNG	0.2	0.22	0.1516	TRUE	267	562	48	632	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-ATP8	7	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	20487	1	0	0.89	0.0884	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCMS_LUNG	0	0.89	0.101	FALSE	231	205	14	283	0	FALSE	ACH-000062
RERFLCMS_LUNG	WBP2--MT-ATP8	7	0	WBP2	9236	chr17:73842590:-	MT-ATP8	13153	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0884	0	WBP2->WW_domain_binding_protein_2,chr17:73841780-73852588:-,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCMS_LUNG	1	1	0.0884	FALSE	0	0	0	3	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-CO2	4	9	MT-ND4	1779	chrM:11538:+	MT-CO2	5483	chrM:7690:+	INCL_NON_REF_SPLICE	YES	20047	66	0	0.16	0.0505	0.1137	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCMS_LUNG	0	0.16	0.1642	FALSE	5	1	0	19	0	FALSE	ACH-000062
RERFLCMS_LUNG	AP003900.6--AC008132.1	5	4	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	2	8	0.82	0.53	0.0632	0.0505	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	RERFLCMS_LUNG	0.53	0.82	0.1137	TRUE	0	0	0	13	0	TRUE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-ATP8	6	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0758	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCMS_LUNG	1	1	0.0758	FALSE	231	204	14	283	0	FALSE	ACH-000062
RERFLCMS_LUNG	AP003900.6--AC008132.1	2	15	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	5	0	0.77	1	0.0253	0.1895	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	RERFLCMS_LUNG	0.77	1	0.2148	TRUE	1	1	0	28	1	FALSE	ACH-000062
RERFLCMS_LUNG	C15orf57--CBX3	5	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	41	48	0.15	0.13	0.0632	0.0253	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RERFLCMS_LUNG	0.13	0.15	0.0885	TRUE	267	562	48	632	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ATP6--MT-CO1	5	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12659	23076	0	0	0.0632	0.0253	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFLCMS_LUNG	0	0	0.0885	FALSE	183	104	9	328	0	FALSE	ACH-000062
RERFLCMS_LUNG	AP003900.6--AC008132.1	2	13	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0253	0.1642	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	RERFLCMS_LUNG	0.88	1	0.1895	TRUE	0	0	0	12	0	TRUE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-CO2	5	1	MT-ND4	1275	chrM:11034:+	MT-CO2	5522	chrM:7729:+	INCL_NON_REF_SPLICE	YES	18770	7904	0	0	0.0632	0.0126	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCMS_LUNG	0	0	0.0758	FALSE	5	1	0	19	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-CO2	5	1	MT-ND4	1209	chrM:10968:+	MT-CO2	5522	chrM:7729:+	INCL_NON_REF_SPLICE	NO	15897	7904	0	0	0.0632	0.0126	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCMS_LUNG	0	0	0.0758	FALSE	5	1	0	19	0	FALSE	ACH-000062
RERFLCMS_LUNG	RP11-96H19.1--RP11-446N19.1	4	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0505	0.0632	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCMS_LUNG	0.82	1	0.1137	FALSE	515	4851	409	746	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1959	chrM:11718:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	19177	0	0	1	0.0379	0.101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCMS_LUNG	0	1	0.1389	FALSE	231	217	16	283	0	FALSE	ACH-000062
RERFLCMS_LUNG	NRIP1--AF127936.7	4	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.31	1	0.0505	0.0505	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFLCMS_LUNG	0.31	1	0.101	FALSE	164	806	69	479	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ATP6--MT-CO1	4	3	MT-ATP6	1189	chrM:8715:+	MT-CO1	5220	chrM:6442:+	INCL_NON_REF_SPLICE	YES	14321	21352	0	0	0.0505	0.0379	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFLCMS_LUNG	0	0	0.0884	FALSE	183	104	9	328	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	2255	chrM:12014:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	2375	0	0	1	0.0379	0.0884	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCMS_LUNG	0	1	0.1263	FALSE	216	209	16	281	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-ATP8	4	3	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	20001	977	0	0.01	0.0505	0.0379	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCMS_LUNG	0	0.01	0.0884	FALSE	231	217	16	283	0	FALSE	ACH-000062
RERFLCMS_LUNG	EPHA2--ANO7P1	4	2	EPHA2	13620	chr1:16455929:-	ANO7P1	20565	chr1:16551984:-	ONLY_REF_SPLICE	YES	122	1	0.05	0.86	0.0505	0.0253	LOCAL_REARRANGEMENT:-:[59822],EPHA2->EPH_receptor_A2,Oncogene{Bushman},chr1:16450832-16482582:-,ANO7P1->anoctamin_7_pseudogene_1,chr1:16542404-16554522:-	RERFLCMS_LUNG	0.05	0.86	0.0758	TRUE	0	0	0	1	0	TRUE	ACH-000062
RERFLCMS_LUNG	MT-ATP6--MT-CO1	4	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10724	23148	0	0	0.0505	0.0253	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFLCMS_LUNG	0	0	0.0758	FALSE	183	104	9	328	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ATP6--MT-CO1	4	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	10490	22762	0	0	0.0505	0.0253	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFLCMS_LUNG	0	0	0.0758	FALSE	183	104	9	328	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18061	63	0	0.12	0.0379	0.0758	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCMS_LUNG	0	0.12	0.1137	FALSE	231	217	16	283	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1773	chrM:11532:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	20116	0	0	1	0.0379	0.0758	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCMS_LUNG	0	1	0.1137	FALSE	231	217	16	283	0	FALSE	ACH-000062
RERFLCMS_LUNG	APP--MT-ND2	4	1	APP	11652	chr21:27394197:-	MT-ND2	33030	chrM:5324:+	INCL_NON_REF_SPLICE	YES	1585	5822	0	0	0.0505	0.0126	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	RERFLCMS_LUNG	0	0	0.0631	FALSE	0	1	0	51	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-CO2	4	1	MT-ND4	1458	chrM:11217:+	MT-CO2	5486	chrM:7693:+	INCL_NON_REF_SPLICE	YES	21912	90	0	0.05	0.0505	0.0126	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCMS_LUNG	0	0.05	0.0631	FALSE	5	1	0	19	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCMS_LUNG	1	1	0.0505	FALSE	499	1288	110	792	0	FALSE	ACH-000062
RERFLCMS_LUNG	NRIP1--AF127936.7	3	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.32	1	0.0379	0.0505	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFLCMS_LUNG	0.32	1	0.0884	FALSE	125	705	46	456	0	FALSE	ACH-000062
RERFLCMS_LUNG	YWHAE--CRK	4	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0505	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	RERFLCMS_LUNG	1	1	0.0505	TRUE	6	50	7	115	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0.0379	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCMS_LUNG	1	1	0.0758	FALSE	462	80	0	856	0	FALSE	ACH-000062
RERFLCMS_LUNG	RP11-96H19.1--RP11-446N19.1	2	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0.0884	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCMS_LUNG	1	1	0.1137	FALSE	192	492	57	212	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	10863	21298	0	0	0.0379	0.0253	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFLCMS_LUNG	0	0	0.0632	FALSE	183	104	9	328	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	10584	20675	0	0	0.0379	0.0253	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFLCMS_LUNG	0	0	0.0632	FALSE	183	104	9	328	0	FALSE	ACH-000062
RERFLCMS_LUNG	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	36	1	0.12	0.0379	0.0253	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RERFLCMS_LUNG	0.12	1	0.0632	TRUE	465	1949	224	605	0	FALSE	ACH-000062
RERFLCMS_LUNG	APP--MT-ND2	3	1	APP	11619	chr21:27394230:-	MT-ND2	32998	chrM:5292:+	INCL_NON_REF_SPLICE	YES	1266	7258	0	0	0.0379	0.0126	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	RERFLCMS_LUNG	0	0	0.0505	FALSE	0	1	0	51	0	FALSE	ACH-000062
RERFLCMS_LUNG	HMOX1--MT-ND4L	3	1	HMOX1	7050	chr22:35789498:+	MT-ND4L	10904	chrM:10614:+	INCL_NON_REF_SPLICE	YES	353	3319	0.01	0	0.0379	0.0126	HMOX1->chr22:35776354-35790207:+,heme_oxygenase_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCMS_LUNG	0	0.01	0.0505	FALSE	0	0	0	4	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	21082	0	0	1	0.0379	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCMS_LUNG	0	1	0.0505	FALSE	231	217	16	283	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-CO2	3	1	MT-ND4	1222	chrM:10981:+	MT-CO2	5514	chrM:7721:+	INCL_NON_REF_SPLICE	YES	16182	6984	0	0	0.0379	0.0126	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCMS_LUNG	0	0	0.0505	FALSE	5	1	0	19	0	FALSE	ACH-000062
RERFLCMS_LUNG	MIF--FTL	3	0	MIF	1509	chr22:24236699:+	FTL	5311	chr19:49468644:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	MIF->Oncogene{Bushman},chr22:24236191-24237414:+,macrophage_migration_inhibitory_factor_(glycosylation-inhibiting_factor),FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	RERFLCMS_LUNG	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000062
RERFLCMS_LUNG	MT-CO1--TAGLN2	3	0	MT-CO1	1607	chrM:6510:+	TAGLN2	10731	chr1:159888436:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,TAGLN2->chr1:159887897-159895522:-,transgelin_2	RERFLCMS_LUNG	1	1	0.0379	FALSE	0	0	0	3	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCMS_LUNG	1	1	0.0379	FALSE	230	198	14	283	0	FALSE	ACH-000062
RERFLCMS_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCMS_LUNG	1	1	0.0379	FALSE	231	205	14	283	0	FALSE	ACH-000062
RERFLCMS_LUNG	AP003900.6--AC008132.1	1	5	AP003900.6	2187	chr21:11172043:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	2	8	0.75	0.43	0.0126	0.0632	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	RERFLCMS_LUNG	0.43	0.75	0.0758	TRUE	0	0	0	3	0	TRUE	ACH-000062
RERFLCMS_LUNG	AP003900.6--AC008132.1	1	5	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	5	8	0.55	0.43	0.0126	0.0632	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	RERFLCMS_LUNG	0.43	0.55	0.0758	TRUE	0	0	0	13	0	TRUE	ACH-000062
RERFLCMS_LUNG	CPNE7--RPL13	1	5	CPNE7	9992	chr16:89655216:+	RPL13	20919	chr16:89628743:+	ONLY_REF_SPLICE	YES	19	2273	0.24	0	0.0126	0.0632	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[11226],CPNE7->chr16:89642176-89663654:+,copine_7,RPL13->chr16:89627065-89630950:+,ribosomal_protein_L13	RERFLCMS_LUNG	0	0.24	0.0758	FALSE	0	0	0	1	0	FALSE	ACH-000062
RERFLCMS_LUNG	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	133	0.75	0.02	0.0253	0.0126	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RERFLCMS_LUNG	0.02	0.75	0.0379	FALSE	16	356	14	466	0	FALSE	ACH-000062
RERFLCMS_LUNG	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0126	0.0632	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCMS_LUNG	1	1	0.0758	FALSE	467	2173	244	435	0	FALSE	ACH-000062
RERFLCMS_LUNG	ZNF276--AFG3L1P	2	1	ZNF276	9986	chr16:89800446:+	AFG3L1P	18393	chr16:90044047:+	ONLY_REF_SPLICE	YES	33	27	0.08	0.1	0.0253	0.0126	ZNF276->chr16:89786808-89807311:+,zinc_finger_protein_276,AFG3L1P->AFG3_like_matrix_AAA_peptidase_subunit_1,_pseudogene,chr16:90038994-90068569:+	RERFLCMS_LUNG	0.08	0.1	0.0379	TRUE	0	0	0	1	0	FALSE	ACH-000062
RERFLCMS_LUNG	CLTC--PRKCA	2	0	CLTC	5948	chr17:57728677:+	PRKCA	51727	chr17:64728806:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha	RERFLCMS_LUNG	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000062
RERFLCMS_LUNG	CPSF6--NR0B1	2	0	CPSF6	11046	chr12:69656342:+	NR0B1	23329	chrX:30322940:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,NR0B1->chrX:30322323-30327715:-,nuclear_receptor_subfamily_0_group_B_member_1	RERFLCMS_LUNG	1	1	0.0253	TRUE	0	1	0	8	0	TRUE	ACH-000062
RERFLCMS_LUNG	NDC80--HIF1A	2	0	NDC80	4483	chr18:2577356:+	HIF1A	39781	chr14:62211423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx_FI:{Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Cells_-_Transformed_fibroblasts=4,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Lung=1,Artery_-_Coronary=1,Esophagus_-_Muscularis=1},NDC80->NDC80_kinetochore_complex_component,chr18:2571510-2616634:+,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	RERFLCMS_LUNG	1	1	0.0253	TRUE	2	27	1	8	0	FALSE	ACH-000062
RERFLCMS_LUNG	NUPL2--NPSR1-AS1	2	0	NUPL2	2892	chr7:23224917:+	NPSR1-AS1	20186	chr7:34768428:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,NPSR1-AS1->NPSR1_antisense_RNA_1,chr7:34386124-34911194:-	RERFLCMS_LUNG	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000062
RERFLCMS_LUNG	RAB3B--TXNDC12	1	2	RAB3B	4685	chr1:52398990:-	TXNDC12	23017	chr1:52507269:-	ONLY_REF_SPLICE	YES	8	459	0.27	0.01	0.0126	0.0253	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[29367],RAB3B->RAB3B,_member_RAS_oncogene_family,chr1:52373628-52456436:-,TXNDC12->chr1:52485803-52521843:-,thioredoxin_domain_containing_12	RERFLCMS_LUNG	0.01	0.27	0.0379	FALSE	0	1	0	1	1	FALSE	ACH-000062
RERFLCMS_LUNG	RPS6KB1--VMP1	1	2	RPS6KB1	7326	chr17:57992064:+	VMP1	34053	chr17:57851115:+	ONLY_REF_SPLICE	YES	99	370	0.03	0.01	0.0126	0.0253	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	RERFLCMS_LUNG	0.01	0.03	0.0379	FALSE	0	0	0	2	0	FALSE	ACH-000062
RERFLCMS_LUNG	AGFG1--MFF	1	1	AGFG1	9443	chr2:228395926:+	MFF	33614	chr2:228197135:+	ONLY_REF_SPLICE	YES	237	679	0.01	0	0.0126	0.0126	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Brain_-_Substantia_nigra=1},AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,MFF->chr2:228189867-228222550:+,mitochondrial_fission_factor	RERFLCMS_LUNG	0	0.01	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000062
RERFLCMS_LUNG	ATRX--MAGT1	1	1	ATRX	35890	chrX:76812922:-	MAGT1	48542	chrX:77131094:-	ONLY_REF_SPLICE	YES	56	169	0.03	0.01	0.0126	0.0126	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[40159],ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,MAGT1->chrX:77081861-77151090:-,magnesium_transporter_1	RERFLCMS_LUNG	0.01	0.03	0.0252	FALSE	0	0	0	2	0	FALSE	ACH-000062
RERFLCMS_LUNG	BNIP2--ANXA2	1	1	BNIP2	1400	chr15:59981334:-	ANXA2	37731	chr15:60656722:-	ONLY_REF_SPLICE	NO	107	3575	0.02	0	0.0126	0.0126	BNIP2->BCL2/adenovirus_E1B_19kDa_interacting_protein_2,chr15:59951345-59981733:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	RERFLCMS_LUNG	0	0.02	0.0252	FALSE	0	2	0	6	0	FALSE	ACH-000062
RERFLCMS_LUNG	CD44--PDHX	1	1	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	1070	107	0	0.02	0.0126	0.0126	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	RERFLCMS_LUNG	0	0.02	0.0252	FALSE	0	20	0	35	2	FALSE	ACH-000062
RERFLCMS_LUNG	NR1H2--CCNB1	1	1	NR1H2	1143	chr19:50833052:+	CCNB1	17532	chr5:68467097:+	ONLY_REF_SPLICE	YES	1	493	0.67	0	0.0126	0.0126	NR1H2->chr19:50832910-50886239:+,nuclear_receptor_subfamily_1_group_H_member_2,CCNB1->Oncogene{Bushman},chr5:68462837-68474072:+,cyclin_B1	RERFLCMS_LUNG	0	0.67	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000062
RERFLCMS_LUNG	RP1-34H18.1--NAV3	1	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0126	0.0126	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	RERFLCMS_LUNG	0.5	1	0.0252	TRUE	254	575	65	124	0	FALSE	ACH-000062
RERFLCMS_LUNG	RPRD2--B4GALT6	1	1	RPRD2	4855	chr1:150390201:+	B4GALT6	31331	chr18:29211109:-	ONLY_REF_SPLICE	YES	38	33	0.05	0.06	0.0126	0.0126	RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,B4GALT6->beta-1,4-galactosyltransferase_6,chr18:29202210-29265799:-	RERFLCMS_LUNG	0.05	0.06	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-000062
RERFLCMS_LUNG	RPS6KB1--VMP1	1	1	RPS6KB1	7326	chr17:57992064:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	99	613	0.02	0	0.0126	0.0126	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	RERFLCMS_LUNG	0	0.02	0.0252	FALSE	0	4	1	7	3	FALSE	ACH-000062
RERFLCMS_LUNG	YWHAZ--KLF10	1	1	YWHAZ	1120	chr8:101965497:-	KLF10	23145	chr8:103664625:-	ONLY_REF_SPLICE	YES	12	115	0.14	0.02	0.0126	0.0126	GTEx_FI:{Skin=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Adipose_-_Visceral_(Omentum)=1},YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta,KLF10->Kruppel-like_factor_10,chr8:103661007-103668130:-	RERFLCMS_LUNG	0.02	0.14	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-000062
MON_SOFT_TISSUE	TIMM23B--LINC00843	47	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9235	0.3144	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MON_SOFT_TISSUE	1	1	1.2379	TRUE	508	994	45	981	0	FALSE	ACH-001128
MON_SOFT_TISSUE	MT-ND6--MT-TE	30	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5895	0.0589	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MON_SOFT_TISSUE	1	1	0.6484	FALSE	499	1288	110	792	0	FALSE	ACH-001128
MON_SOFT_TISSUE	TIMM23--RP11-464F9.1	27	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	224	3	0.12	0.91	0.5305	0.0786	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MON_SOFT_TISSUE	0.12	0.91	0.6091	TRUE	519	3926	326	965	0	FALSE	ACH-001128
MON_SOFT_TISSUE	KANSL1--ARL17B	21	24	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	37	29	0.55	0.61	0.4126	0.4716	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	MON_SOFT_TISSUE	0.55	0.61	0.8842	TRUE	181	1564	124	196	0	FALSE	ACH-001128
MON_SOFT_TISSUE	MT-TA--MT-TC	16	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3144	0.0393	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MON_SOFT_TISSUE	1	1	0.3537	FALSE	462	80	0	856	0	FALSE	ACH-001128
MON_SOFT_TISSUE	PLK3--KIF2C	12	7	PLK3	1723	chr1:45266619:+	KIF2C	12947	chr1:45213056:+	ONLY_REF_SPLICE	YES	27	225	0.41	0.08	0.2358	0.1375	LOCAL_REARRANGEMENT:+:[32458],PLK3->chr1:45265897-45271662:+,polo_like_kinase_3,KIF2C->chr1:45205490-45233439:+,kinesin_family_member_2C	MON_SOFT_TISSUE	0.08	0.41	0.3733	TRUE	0	0	0	1	0	TRUE	ACH-001128
MON_SOFT_TISSUE	MT-ND6--MT-TE	10	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1965	0.1179	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MON_SOFT_TISSUE	1	1	0.3144	FALSE	499	1288	110	792	0	FALSE	ACH-001128
MON_SOFT_TISSUE	RP11-275N1.1--NEBL	9	6	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	12	9	0.56	0.62	0.1768	0.1179	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	MON_SOFT_TISSUE	0.56	0.62	0.2947	TRUE	0	2	0	25	2	FALSE	ACH-001128
MON_SOFT_TISSUE	NPM1P24--SET	10	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1965	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MON_SOFT_TISSUE	1	1	0.1965	TRUE	0	0	0	434	0	FALSE	ACH-001128
MON_SOFT_TISSUE	C15orf57--CBX3	7	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	65	22	0.17	0.37	0.1375	0.1179	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MON_SOFT_TISSUE	0.17	0.37	0.2554	TRUE	267	562	48	632	0	FALSE	ACH-001128
MON_SOFT_TISSUE	MT-ND6--MT-TE	7	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1375	0.0589	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MON_SOFT_TISSUE	1	1	0.1964	FALSE	499	1288	110	792	0	FALSE	ACH-001128
MON_SOFT_TISSUE	MT-ND6--MT-TE	4	8	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0786	0.1572	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MON_SOFT_TISSUE	1	1	0.2358	FALSE	499	1288	110	792	0	FALSE	ACH-001128
MON_SOFT_TISSUE	MT-ND6--MT-TE	4	6	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0786	0.1179	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MON_SOFT_TISSUE	0.91	1	0.1965	FALSE	499	1288	110	792	0	FALSE	ACH-001128
MON_SOFT_TISSUE	CNOT3--CACNG8	4	4	CNOT3	4077	chr19:54646922:+	CACNG8	18794	chr19:54481400:+	ONLY_REF_SPLICE	YES	61	39	0.12	0.17	0.0786	0.0786	CNOT3->CCR4-NOT_transcription_complex_subunit_3,chr19:54641444-54659419:+,CACNG8->calcium_voltage-gated_channel_auxiliary_subunit_gamma_8,chr19:54466294-54493469:+	MON_SOFT_TISSUE	0.12	0.17	0.1572	TRUE	0	0	0	1	0	TRUE	ACH-001128
MON_SOFT_TISSUE	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	8	1	0.43	0.0786	0.0393	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MON_SOFT_TISSUE	0.43	1	0.1179	TRUE	465	1949	224	605	0	FALSE	ACH-001128
MON_SOFT_TISSUE	MT-TA--MT-TC	4	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0786	0.0196	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MON_SOFT_TISSUE	1	1	0.0982	FALSE	462	80	0	856	0	FALSE	ACH-001128
MON_SOFT_TISSUE	XXbac-BPG252P9.9--TUBBP2	4	1	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	YES	1857	0	0	1	0.0786	0.0196	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	MON_SOFT_TISSUE	0	1	0.0982	FALSE	0	1	0	48	1	FALSE	ACH-001128
MON_SOFT_TISSUE	RP11-275N1.1--NEBL	4	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0786	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	MON_SOFT_TISSUE	1	1	0.0786	TRUE	0	0	0	21	0	FALSE	ACH-001128
MON_SOFT_TISSUE	RP11-680G10.1--GSE1	3	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.5	0.0589	0.0786	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MON_SOFT_TISSUE	0.5	1	0.1375	TRUE	458	1351	185	561	0	FALSE	ACH-001128
MON_SOFT_TISSUE	RPSAP52--HMGA2	4	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0786	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	MON_SOFT_TISSUE	1	1	0.0786	FALSE	0	59	0	125	0	FALSE	ACH-001128
MON_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0589	0.0393	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MON_SOFT_TISSUE	0.71	1	0.0982	FALSE	515	4851	409	746	0	FALSE	ACH-001128
MON_SOFT_TISSUE	XXbac-BPG252P9.9--TUBBP2	3	1	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	786	0	0.01	1	0.0589	0.0196	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	MON_SOFT_TISSUE	0.01	1	0.0785	FALSE	0	1	0	48	1	FALSE	ACH-001128
MON_SOFT_TISSUE	DAB2--MT-ATP8	3	0	DAB2	21112	chr5:39377026:-	MT-ATP8	29111	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0589	0	DAB2->DAB2,_clathrin_adaptor_protein,Oncogene{Bushman},chr5:39371780-39462402:-,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MON_SOFT_TISSUE	1	1	0.0589	FALSE	0	0	0	1	0	FALSE	ACH-001128
MON_SOFT_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0589	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MON_SOFT_TISSUE	1	1	0.0589	FALSE	462	80	0	856	0	FALSE	ACH-001128
MON_SOFT_TISSUE	RP11-120D5.1--MID1	2	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	1	0.6	0.75	0.0393	0.0196	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MON_SOFT_TISSUE	0.6	0.75	0.0589	FALSE	0	48	1	163	0	FALSE	ACH-001128
MON_SOFT_TISSUE	MIR302B--GNAS	2	0	MIR302B	2110	chr4:113569810:-	GNAS	23108	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0393	0	MIR302B->chr4:113567632-113571207:-,microRNA_302b,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	MON_SOFT_TISSUE	1	1	0.0393	TRUE	0	27	0	1	20	TRUE	ACH-001128
MON_SOFT_TISSUE	MRPS28--SLC41A3	2	0	MRPS28	1254	chr8:80942271:-	SLC41A3	25965	chr3:125735718:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0393	0	MRPS28->chr8:80830952-80942524:-,mitochondrial_ribosomal_protein_S28,SLC41A3->chr3:125725198-125820404:-,solute_carrier_family_41_member_3	MON_SOFT_TISSUE	1	1	0.0393	TRUE	0	0	0	1	0	TRUE	ACH-001128
MON_SOFT_TISSUE	MYO19--SERPINB6	2	0	MYO19	9246	chr17:34881059:-	SERPINB6	41391	chr6:2949303:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0393	0	MYO19->chr17:34851477-34899284:-,myosin_XIX,SERPINB6->chr6:2948393-2972090:-,serpin_family_B_member_6	MON_SOFT_TISSUE	1	1	0.0393	TRUE	0	0	0	1	0	TRUE	ACH-001128
MON_SOFT_TISSUE	RCC1--PRKDC	2	0	RCC1	2920	chr1:28835417:+	PRKDC	20947	chr8:48869991:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0393	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide	MON_SOFT_TISSUE	1	1	0.0393	TRUE	0	0	0	1	0	TRUE	ACH-001128
MON_SOFT_TISSUE	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0.0393	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MON_SOFT_TISSUE	1	1	0.0589	TRUE	62	24	1	171	0	FALSE	ACH-001128
MON_SOFT_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	1	1	0.67	0.67	0.0196	0.0196	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MON_SOFT_TISSUE	0.67	0.67	0.0392	FALSE	16	356	14	466	0	FALSE	ACH-001128
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-33--IGKJ4	2113	0	IGKV1-33	1506	chr2:89567758:-	IGKJ4	4507	chr2:89160434:-	ONLY_REF_SPLICE	YES	0	0	1	1	23.148	0	GTEx_FI:{Esophagus=[count:4=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:3=pct:1.0],Blood=[count:2=pct:1.1],Breast=[count:2=pct:1.8],Whole_Blood=[count:2=pct:1.5],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6]},HGNC_GENEFAM,IGKV1-33->chr2:89567758-89568263:-,immunoglobulin_kappa_variable_1-33,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	23.148	FALSE	18	133	7	1	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	152	41	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.6652	0.4492	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	2.1144	TRUE	508	994	45	981	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	78	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	237	5	0.26	0.94	0.8545	0.0438	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.94	0.8983	TRUE	519	3926	326	965	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	52	30	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	40	71	0.67	0.54	0.5697	0.3287	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.67	0.8984	TRUE	181	1564	124	196	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	48	2	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	11384	1360	0	0.04	0.5258	0.0219	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.5477	FALSE	231	217	16	283	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	33	22	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	22	4	0.71	0.93	0.3615	0.241	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.93	0.6025	TRUE	0	48	0	65	48	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-344E13.3--UBBP4	24	54	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2629	0.5916	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8545	TRUE	23	13	0	54	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	27	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2958	0.0219	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3177	FALSE	499	1288	110	792	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	23	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.252	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.252	TRUE	0	16	0	53	13	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	21	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2301	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2301	TRUE	0	0	0	434	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	20	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2191	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2191	FALSE	230	193	14	283	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	20	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2191	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2191	TRUE	0	0	0	434	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	19	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2081	0.0219	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.23	FALSE	499	1288	110	792	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	12	24	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	22	0	0.62	1	0.1315	0.2629	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.3944	TRUE	0	35	0	55	35	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	14	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	48	14	0.32	0.62	0.1534	0.0986	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.62	0.252	TRUE	267	562	48	632	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	16	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1753	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1753	FALSE	230	198	14	283	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	37	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	2	38	0.95	0.51	0.0329	0.4053	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.95	0.4382	FALSE	189	492	56	216	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	12	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1315	0.011	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1425	FALSE	462	80	0	856	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	12	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1315	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1315	FALSE	231	205	14	283	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	33	MT-CO3	1113	chrM:9319:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0329	0.3615	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.3944	FALSE	189	492	56	216	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0986	0.0986	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.1972	FALSE	499	1288	110	792	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	32	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	5	0.97	0.88	0.0329	0.3506	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.97	0.3835	FALSE	189	492	56	216	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	10	3	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1096	0.0329	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1425	FALSE	46	201	11	112	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	29	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	6	0.97	0.84	0.0329	0.3177	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	0.97	0.3506	FALSE	189	492	56	216	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	10	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1096	0.011	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1206	FALSE	462	80	0	856	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0767	0.0986	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1753	FALSE	499	1288	110	792	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	8	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0876	0.011	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.0986	FALSE	189	492	56	216	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	8	0	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0876	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0876	TRUE	0	11	0	26	8	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	19	MT-CO3	1036	chrM:9242:+	MT-ATP6	4744	chrM:8486:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0.2081	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.241	FALSE	189	492	56	216	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	7	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3376	0	0	1	0.0767	0.0219	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0986	FALSE	13	9	0	364	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	46	15	0.22	0.46	0.0548	0.0876	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.46	0.1424	TRUE	267	562	48	632	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	12	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0438	0.1315	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1753	FALSE	499	1288	110	792	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	7	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	23	0	0.34	1	0.0548	0.0767	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	1	0.1315	FALSE	213	207	15	279	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11306	2	0	0.82	0.0657	0.0329	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.82	0.0986	FALSE	231	217	16	283	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DPH6-AS1--RP11-684B21.1	6	1	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0657	0.011	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.0767	TRUE	17	119	17	33	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTSC--RPL13A	6	0	CTSC	19843	chr11:88027207:-	RPL13A	26005	chr19:49994730:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0657	0	CTSC->cathepsin_C,chr11:88026760-88070955:-,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0657	TRUE	0	0	0	2	0	TRUE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	6	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0657	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0657	TRUE	0	0	0	81	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	8	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0.0876	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1314	FALSE	499	1288	110	792	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0657	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0657	FALSE	462	80	0	856	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	5	2	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0.0219	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0767	TRUE	13	49	2	38	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0548	0.0219	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0767	FALSE	515	4851	409	746	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8265	17925	0	0	0.0548	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0658	FALSE	183	104	9	328	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	8333	17602	0	0	0.0548	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0658	FALSE	183	104	9	328	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	5	0	AC104389.28	1084	chr11:5526799:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0548	TRUE	0	16	0	53	13	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0548	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0548	TRUE	22	156	2	142	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	3	MT-ATP6	1444	chrM:8970:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	8766	15594	0	0	0.0438	0.0329	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0767	FALSE	183	104	9	328	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	3	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	10828	170	0	0.04	0.0438	0.0329	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0767	FALSE	231	217	16	283	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	4	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3404	0	0	1	0.0438	0.0219	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0657	FALSE	13	9	0	364	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10932	53	0	0.1	0.0438	0.0219	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.1	0.0657	FALSE	231	217	16	283	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	9992	0	0	1	0.0438	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0548	FALSE	182	97	9	327	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0438	FALSE	230	198	14	283	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0438	FALSE	231	204	14	283	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0438	FALSE	231	217	16	283	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1201	chrM:10960:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0438	FALSE	230	193	14	283	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTATP6P1--MT-ND1	4	0	MTATP6P1	1126	chr1:569201:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0438	FALSE	16	0	0	13	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	3	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	11233	0	0	1	0.0329	0.0329	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0658	FALSE	231	217	16	283	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	2	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	NO	11226	853	0	0.01	0.0329	0.0219	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0548	FALSE	231	217	16	283	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--GDI2	3	1	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	4	549	0.5	0.01	0.0329	0.011	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.5	0.0439	FALSE	0	6	0	16	3	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	9899	16174	0	0	0.0329	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0439	FALSE	183	104	9	328	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8368	17923	0	0	0.0329	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0439	FALSE	183	104	9	328	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	9453	16085	0	0	0.0329	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0439	FALSE	183	104	9	328	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9992	17923	0	0	0.0329	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0439	FALSE	183	104	9	328	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	14061	698	0	0.01	0.0329	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0439	FALSE	231	217	16	283	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-33--IGKJ4	3	0	IGKV1-33	1505	chr2:89567759:-	IGKJ4	4506	chr2:89160435:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx_FI:{Esophagus=[count:4=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:3=pct:1.0],Blood=[count:2=pct:1.1],Breast=[count:2=pct:1.8],Whole_Blood=[count:2=pct:1.5],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6]},HGNC_GENEFAM,IGKV1-33->chr2:89567758-89568263:-,immunoglobulin_kappa_variable_1-33,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	FALSE	18	133	7	1	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00158--AP000233.4	3	0	LINC00158	5017	chr21:26793020:-	AP000233.4	12117	chr21:26547759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	NEIGHBORS[51994],LINC00158->chr21:26758133-26804013:-,long_intergenic_non-protein_coding_RNA_158,AP000233.4->chr21:26541745-26706139:-	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	FALSE	0	1	0	4	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	FALSE	230	193	14	283	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	FALSE	230	193	14	283	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	FALSE	231	204	14	283	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	FALSE	499	1288	110	792	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	FALSE	499	1288	110	792	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	FALSE	499	1288	110	792	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFA4--PHF14	3	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	TRUE	19	32	3	60	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL3--EEF2	3	0	RPL3	3820	chr22:39713575:-	EEF2	16810	chr19:3980016:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx&tcga_normals:6/3694=0.16%,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	TRUE	0	0	0	3	0	TRUE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0.0219	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0438	FALSE	192	492	57	212	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0.0219	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0438	FALSE	467	2173	244	435	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	47891	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0219	TRUE	1	3	0	10	0	TRUE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GEMIN6--SOS1	2	0	GEMIN6	4383	chr2:39006260:+	SOS1	20941	chr2:39262641:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	GEMIN6->chr2:38978676-39012142:+,gem_nuclear_organelle_associated_protein_6,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKAG1--C12orf54	2	0	PRKAG1	4640	chr12:49406845:-	C12orf54	19748	chr12:48884595:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	PRKAG1->chr12:49396057-49412980:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_1,C12orf54->chr12:48876286-48890295:+,chromosome_12_open_reading_frame_54	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNASEH2B--ELF1	2	0	RNASEH2B	1463	chr13:51484276:+	ELF1	23054	chr13:41533152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	RNASEH2B->chr13:51483814-51544592:+,ribonuclease_H2_subunit_B,ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL22--PER1	2	0	RPL22	8153	chr1:6252990:-	PER1	18522	chr17:8054163:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0219	0	RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22,PER1->Oncogene{Bushman},chr17:8043790-8059824:-,period_circadian_clock_1	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0219	TRUE	0	0	0	1	0	TRUE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.011	0.0219	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0329	FALSE	407	2205	196	549	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--CNOT1	1	1	DANCR	1530	chr4:53579126:+	CNOT1	33010	chr16:58581586:-	ONLY_REF_SPLICE	NO	858	210	0	0.01	0.011	0.011	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--RBCK1	1	1	DANCR	1530	chr4:53579126:+	RBCK1	11817	chr20:398170:+	ONLY_REF_SPLICE	YES	858	168	0	0.01	0.011	0.011	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,RBCK1->RANBP2-type_and_C3HC4-type_zinc_finger_containing_1,chr20:388142-411610:+	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.022	FALSE	0	0	0	2	0	FALSE	ACH-000829
HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.011	0.011	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HUNS1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.022	TRUE	62	24	1	171	0	FALSE	ACH-000829
MKN1_STOMACH	CECR7--AC008132.1	177	12	CECR7	1775	chr22:17518234:+	AC008132.1	13601	chr22:18723545:+	ONLY_REF_SPLICE	YES	5	0	0.97	1	1.7147	0.1163	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	MKN1_STOMACH	0.97	1	1.831	TRUE	0	0	0	5	0	TRUE	ACH-000351
MKN1_STOMACH	AP003900.6--AC011718.2	177	11	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.7147	0.1066	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MKN1_STOMACH	1	1	1.8213	TRUE	0	3	0	38	3	FALSE	ACH-000351
MKN1_STOMACH	TUBA1C--WNT1	136	6	TUBA1C	7646	chr12:49658967:+	WNT1	16267	chr12:49374207:+	ONLY_REF_SPLICE	YES	22	10	0.87	0.93	1.3175	0.0581	TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c,WNT1->Oncogene{Bushman},Wnt_family_member_1,chr12:49372398-49375459:+	MKN1_STOMACH	0.87	0.93	1.3756	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	TIMM23B--LINC00843	96	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.93	0.1163	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MKN1_STOMACH	1	1	1.0463	TRUE	508	994	45	981	0	FALSE	ACH-000351
MKN1_STOMACH	UBE2V2--PRKAA1	87	0	UBE2V2	1071	chr8:48921030:+	PRKAA1	20809	chr5:40769605:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.8428	0	{Klijn_CCL:Stomach=1},UBE2V2->chr8:48920960-48977268:+,ubiquitin_conjugating_enzyme_E2_V2,PRKAA1->chr5:40759481-40798476:-,protein_kinase_AMP-activated_catalytic_subunit_alpha_1	MKN1_STOMACH	1	1	0.8428	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	PARVA--USP47	80	23	PARVA	1599	chr11:12399330:+	USP47	46615	chr11:11963882:+	ONLY_REF_SPLICE	YES	132	31	0.44	0.77	0.775	0.2228	PARVA->chr11:12398732-12552348:+,parvin_alpha,USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47	MKN1_STOMACH	0.44	0.77	0.9978	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	AC104389.28--HBE1	68	36	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	23	0	0.82	1	0.6588	0.3488	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MKN1_STOMACH	0.82	1	1.0076	TRUE	0	48	0	65	48	FALSE	ACH-000351
MKN1_STOMACH	RP11-401O9.3--CTC-297N7.11	59	3	RP11-401O9.3	1121	chr17:10223829:+	CTC-297N7.11	7706	chr17:10309465:+	ONLY_REF_SPLICE	YES	5	0	0.93	1	0.5716	0.0291	NEIGHBORS[41686],RP11-401O9.3->chr17:10223709-10244775:+,CTC-297N7.11->chr17:10286461-10527203:+	MKN1_STOMACH	0.93	1	0.6007	FALSE	0	1	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	TIMM23--RP11-464F9.1	57	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	149	0	0.28	1	0.5522	0.0097	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MKN1_STOMACH	0.28	1	0.5619	TRUE	519	3926	326	965	0	FALSE	ACH-000351
MKN1_STOMACH	AGO3--FLYWCH1	47	24	AGO3	1728	chr1:36397046:+	FLYWCH1	48577	chr16:2979614:+	ONLY_REF_SPLICE	YES	27	48	0.72	0.6	0.4553	0.2325	AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+,FLYWCH1->FLYWCH-type_zinc_finger_1,chr16:2961938-3001209:+	MKN1_STOMACH	0.6	0.72	0.6878	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	COX8A--NAA40	45	30	COX8A	1188	chr11:63742266:+	NAA40	9338	chr11:63719710:+	ONLY_REF_SPLICE	YES	1305	73	0.05	0.51	0.4359	0.2906	LOCAL_REARRANGEMENT:+:[17279],COX8A->chr11:63742079-63744015:+,cytochrome_c_oxidase_subunit_8A,NAA40->N(alpha)-acetyltransferase_40,_NatD_catalytic_subunit,chr11:63706431-63724800:+	MKN1_STOMACH	0.05	0.51	0.7265	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	RP11-123O10.4--GRIP1	48	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.465	0.0872	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MKN1_STOMACH	1	1	0.5522	FALSE	416	2512	207	587	0	FALSE	ACH-000351
MKN1_STOMACH	TMEM259--LSM7	46	12	TMEM259	3774	chr19:1014191:-	LSM7	15920	chr19:2321821:-	ONLY_REF_SPLICE	YES	133	202	0.3	0.22	0.4456	0.1163	TMEM259->chr19:1009647-1021117:-,transmembrane_protein_259,LSM7->LSM7_homolog,_U6_small_nuclear_RNA_and_mRNA_degradation_associated,chr19:2321516-2328619:-	MKN1_STOMACH	0.22	0.3	0.5619	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	SLC27A4--STXBP1	46	8	SLC27A4	9826	chr9:131118075:+	STXBP1	17176	chr9:130413882:+	ONLY_REF_SPLICE	YES	32	94	0.63	0.36	0.4456	0.0775	{Klijn_CCL:Stomach=1},SLC27A4->chr9:131102925-131123749:+,solute_carrier_family_27_member_4,STXBP1->chr9:130374544-130457460:+,syntaxin_binding_protein_1	MKN1_STOMACH	0.36	0.63	0.5231	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	UBE2V2--PRKAA1	45	0	UBE2V2	1071	chr8:48921030:+	PRKAA1	22622	chr5:40767792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4359	0	{Klijn_CCL:Stomach=1},UBE2V2->chr8:48920960-48977268:+,ubiquitin_conjugating_enzyme_E2_V2,PRKAA1->chr5:40759481-40798476:-,protein_kinase_AMP-activated_catalytic_subunit_alpha_1	MKN1_STOMACH	1	1	0.4359	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	FRAS1--ANXA3	39	17	FRAS1	2548	chr4:78987170:+	ANXA3	95503	chr4:79475590:+	ONLY_REF_SPLICE	YES	27	102	0.67	0.35	0.3778	0.1647	NEIGHBORS[7250],FRAS1->Fraser_extracellular_matrix_complex_subunit_1,chr4:78978724-79465423:+,ANXA3->annexin_A3,chr4:79472673-79531597:+	MKN1_STOMACH	0.35	0.67	0.5425	FALSE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	AC004980.7--SRRM3	35	18	AC004980.7	2605	chr7:76180839:+	SRRM3	12327	chr7:75864346:+	ONLY_REF_SPLICE	YES	7	0	0.88	1	0.3391	0.1744	AC004980.7->chr7:76178677-76257299:+,SRRM3->chr7:75831216-75916605:+,serine/arginine_repetitive_matrix_3	MKN1_STOMACH	0.88	1	0.5135	TRUE	0	2	0	2	2	TRUE	ACH-000351
MKN1_STOMACH	RHPN2--ZNF507	31	9	RHPN2	2221	chr19:33535155:-	ZNF507	24307	chr19:32843735:+	ONLY_REF_SPLICE	YES	191	93	0.17	0.3	0.3003	0.0872	RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2,ZNF507->chr19:32836500-32878573:+,zinc_finger_protein_507	MKN1_STOMACH	0.17	0.3	0.3875	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	AP003900.6--AC011718.2	26	18	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	2	0	0.96	1	0.2519	0.1744	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MKN1_STOMACH	0.96	1	0.4263	TRUE	0	5	0	45	5	FALSE	ACH-000351
MKN1_STOMACH	EML4--MTA3	28	10	EML4	8303	chr2:42491871:+	MTA3	62068	chr2:42980514:+	ONLY_REF_SPLICE	YES	45	0	0.46	1	0.2713	0.0969	EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	MKN1_STOMACH	0.46	1	0.3682	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	MT-TA--MT-TC	29	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2809	0.0291	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MKN1_STOMACH	1	1	0.31	FALSE	462	80	0	856	0	FALSE	ACH-000351
MKN1_STOMACH	PPL--C16orf89	25	4	PPL	4585	chr16:4953887:-	C16orf89	31337	chr16:5106189:-	ONLY_REF_SPLICE	YES	46	0	0.39	1	0.2422	0.0388	LOCAL_REARRANGEMENT:-:[83381],PPL->chr16:4932508-5010742:-,periplakin,C16orf89->chr16:5094123-5116111:-,chromosome_16_open_reading_frame_89	MKN1_STOMACH	0.39	1	0.281	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	MT-ND4--MT-ATP8	24	1	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	7326	1484	0	0.02	0.2325	0.0097	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN1_STOMACH	0	0.02	0.2422	FALSE	231	217	16	283	0	FALSE	ACH-000351
MKN1_STOMACH	NRIP1--AF127936.7	23	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.93	1	0.2228	0.0388	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MKN1_STOMACH	0.93	1	0.2616	FALSE	292	1546	117	613	0	FALSE	ACH-000351
MKN1_STOMACH	FAM45A--GRK5	22	6	FAM45A	3767	chr10:120867676:+	GRK5	25785	chr10:121182678:+	ONLY_REF_SPLICE	YES	25	7	0.53	0.8	0.2131	0.0581	{Klijn_CCL:Stomach=1},NEIGHBORS[69605],FAM45A->chr10:120863598-120897496:+,family_with_sequence_similarity_45_member_A,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	MKN1_STOMACH	0.53	0.8	0.2712	FALSE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	USP32--GGA3	22	6	USP32	4918	chr17:58422842:-	GGA3	48993	chr17:73242877:-	ONLY_REF_SPLICE	YES	22	3	0.56	0.9	0.2131	0.0581	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,GGA3->chr17:73232694-73258444:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_3	MKN1_STOMACH	0.56	0.9	0.2712	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	ESRRA--DNAJC4	16	17	ESRRA	5127	chr11:64082432:+	DNAJC4	12106	chr11:63999945:+	INCL_NON_REF_SPLICE	YES	190	28	0.15	0.54	0.155	0.1647	LOCAL_REARRANGEMENT:+:[71286],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,DNAJC4->DnaJ_heat_shock_protein_family_(Hsp40)_member_C4,chr11:63997750-64001758:+	MKN1_STOMACH	0.15	0.54	0.3197	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	MT-ND6--MT-TE	19	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1841	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MKN1_STOMACH	1	1	0.1841	FALSE	499	1288	110	792	0	FALSE	ACH-000351
MKN1_STOMACH	TUBA1C--WNT1	17	7	TUBA1C	7646	chr12:49658967:+	WNT1	15311	chr12:49373251:+	ONLY_REF_SPLICE	YES	22	5	0.52	0.83	0.1647	0.0678	TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c,WNT1->Oncogene{Bushman},Wnt_family_member_1,chr12:49372398-49375459:+	MKN1_STOMACH	0.52	0.83	0.2325	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	AC104389.28--HBE1	9	38	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	23	0	0.67	1	0.0872	0.3681	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MKN1_STOMACH	0.67	1	0.4553	TRUE	0	35	0	55	35	FALSE	ACH-000351
MKN1_STOMACH	AP003900.6--AC011718.2	17	5	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1647	0.0484	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MKN1_STOMACH	1	1	0.2131	TRUE	0	1	0	26	1	FALSE	ACH-000351
MKN1_STOMACH	SNX8--MAD1L1	17	3	SNX8	3400	chr7:2353963:-	MAD1L1	50754	chr7:2041756:-	ONLY_REF_SPLICE	YES	11	41	0.65	0.33	0.1647	0.0291	NEIGHBORS[18527],SNX8->chr7:2291405-2393953:-,sorting_nexin_8,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	MKN1_STOMACH	0.33	0.65	0.1938	FALSE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	CECR7--AC008132.1	15	6	CECR7	1775	chr22:17518234:+	AC008132.1	15153	chr22:18727043:+	ONLY_REF_SPLICE	YES	5	0	0.81	1	0.1453	0.0581	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	MKN1_STOMACH	0.81	1	0.2034	TRUE	0	0	0	5	0	TRUE	ACH-000351
MKN1_STOMACH	C15orf57--CBX3	14	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	19	10	0.53	0.68	0.1356	0.0678	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MKN1_STOMACH	0.53	0.68	0.2034	TRUE	267	562	48	632	0	FALSE	ACH-000351
MKN1_STOMACH	TNIK--EIF5A2	15	3	TNIK	1402	chr3:171177796:-	EIF5A2	47772	chr3:170612212:-	ONLY_REF_SPLICE	YES	11	33	0.62	0.35	0.1453	0.0291	TNIK->TRAF2_and_NCK_interacting_kinase,chr3:170779128-171178197:-,EIF5A2->chr3:170606204-170626482:-,eukaryotic_translation_initiation_factor_5A2	MKN1_STOMACH	0.35	0.62	0.1744	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	UBE2Q1--ASH1L	15	3	UBE2Q1	1802	chr1:154530703:-	ASH1L	25086	chr1:155385714:-	ONLY_REF_SPLICE	YES	82	22	0.18	0.45	0.1453	0.0291	UBE2Q1->chr1:154521053-154531504:-,ubiquitin_conjugating_enzyme_E2_Q1,ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-	MKN1_STOMACH	0.18	0.45	0.1744	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	MT-ND6--MT-TE	14	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1356	0.0291	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MKN1_STOMACH	0.94	1	0.1647	FALSE	499	1288	110	792	0	FALSE	ACH-000351
MKN1_STOMACH	FRAS1--ANXA3	12	8	FRAS1	2548	chr4:78987170:+	ANXA3	97697	chr4:79494334:+	ONLY_REF_SPLICE	YES	27	222	0.43	0.08	0.1163	0.0775	NEIGHBORS[7250],FRAS1->Fraser_extracellular_matrix_complex_subunit_1,chr4:78978724-79465423:+,ANXA3->annexin_A3,chr4:79472673-79531597:+	MKN1_STOMACH	0.08	0.43	0.1938	FALSE	0	1	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	KMT2C--CTBP2P1	13	3	KMT2C	8616	chr7:151970790:-	CTBP2P1	74892	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	18	0	0.47	1	0.1259	0.0291	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	MKN1_STOMACH	0.47	1	0.155	TRUE	0	1	0	4	1	TRUE	ACH-000351
MKN1_STOMACH	CECR7--AC008132.1	13	2	CECR7	1775	chr22:17518234:+	AC008132.1	16240	chr22:18732023:+	ONLY_REF_SPLICE	YES	5	9	0.75	0.62	0.1259	0.0194	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	MKN1_STOMACH	0.62	0.75	0.1453	TRUE	0	0	0	5	0	TRUE	ACH-000351
MKN1_STOMACH	AP003900.6--AC011718.2	13	1	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	0	6	1	0.7	0.1259	0.0097	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MKN1_STOMACH	0.7	1	0.1356	TRUE	0	1	0	21	1	FALSE	ACH-000351
MKN1_STOMACH	IGFBP4--NPM1	13	1	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	1217	0	0.01	1	0.1259	0.0097	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	MKN1_STOMACH	0.01	1	0.1356	TRUE	0	0	0	38	0	FALSE	ACH-000351
MKN1_STOMACH	MT-ND4--MT-ATP8	13	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	6476	2	0	0.88	0.1259	0.0097	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN1_STOMACH	0	0.88	0.1356	FALSE	230	193	14	283	0	FALSE	ACH-000351
MKN1_STOMACH	RP11-384J4.2--NOVA1-AS1	11	7	RP11-384J4.2	2280	chr14:27312862:+	NOVA1-AS1	18103	chr14:27249001:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1066	0.0678	LOCAL_REARRANGEMENT:+:[30261],RP11-384J4.2->chr14:27305934-27629626:+,NOVA1-AS1->NOVA1_antisense_RNA_1_(head_to_head),chr14:27067618-27275673:+	MKN1_STOMACH	1	1	0.1744	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	ARHGAP39--BOP1	11	5	ARHGAP39	2406	chr8:145830920:-	BOP1	20759	chr8:145512985:-	ONLY_REF_SPLICE	YES	19	61	0.46	0.21	0.1066	0.0484	ARHGAP39->Rho_GTPase_activating_protein_39,chr8:145754563-145911194:-,BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-	MKN1_STOMACH	0.21	0.46	0.155	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	UHRF1BP1L--ANKS1B	12	1	UHRF1BP1L	1257	chr12:100536370:-	ANKS1B	33688	chr12:100219167:-	ONLY_REF_SPLICE	YES	10	1	0.57	0.93	0.1163	0.0097	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[43801],UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	MKN1_STOMACH	0.57	0.93	0.126	FALSE	0	0	0	2	0	FALSE	ACH-000351
MKN1_STOMACH	LSM14A--SCGB1B2P	11	3	LSM14A	6089	chr19:34699956:+	SCGB1B2P	17898	chr19:35068361:-	ONLY_REF_SPLICE	YES	318	3	0.04	0.82	0.1066	0.0291	LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+,SCGB1B2P->chr19:35067638-35068606:-,secretoglobin_family_1B_member_2,_pseudogene	MKN1_STOMACH	0.04	0.82	0.1357	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	RP11-680G10.1--GSE1	11	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	43	1	0.22	0.1066	0.0097	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MKN1_STOMACH	0.22	1	0.1163	TRUE	465	1949	224	605	0	FALSE	ACH-000351
MKN1_STOMACH	ARHGAP10--TMEM184C	10	4	ARHGAP10	1393	chr4:148653606:+	TMEM184C	37262	chr4:148544985:+	ONLY_REF_SPLICE	YES	5	58	0.74	0.19	0.0969	0.0388	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:+:[60019],ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,TMEM184C->chr4:148538534-148593195:+,transmembrane_protein_184C	MKN1_STOMACH	0.19	0.74	0.1357	TRUE	0	1	0	2	1	TRUE	ACH-000351
MKN1_STOMACH	MT-ND4--MT-ATP8	10	4	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	3	0	0.82	1	0.0969	0.0388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN1_STOMACH	0.82	1	0.1357	FALSE	209	205	15	279	0	FALSE	ACH-000351
MKN1_STOMACH	TBC1D32--PRCP	11	0	TBC1D32	27616	chr6:121484116:-	PRCP	54797	chr11:82564320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1066	0	TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-,PRCP->chr11:82534544-82681626:-,prolylcarboxypeptidase	MKN1_STOMACH	1	1	0.1066	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	FTH1--ACTB	10	2	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	8025	0	0	1	0.0969	0.0194	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MKN1_STOMACH	0	1	0.1163	TRUE	1	0	0	97	0	FALSE	ACH-000351
MKN1_STOMACH	RETSAT--C2orf68	10	2	RETSAT	6143	chr2:85573098:-	C2orf68	13311	chr2:85838909:-	ONLY_REF_SPLICE	YES	91	46	0.12	0.21	0.0969	0.0194	RETSAT->chr2:85569211-85581743:-,retinol_saturase_(all-trans-retinol_13,14-reductase),C2orf68->chr2:85833777-85839189:-,chromosome_2_open_reading_frame_68	MKN1_STOMACH	0.12	0.21	0.1163	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	MT-TA--MT-TC	9	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0872	0.0291	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MKN1_STOMACH	1	1	0.1163	FALSE	462	80	0	856	0	FALSE	ACH-000351
MKN1_STOMACH	MT-ND6--MT-TE	8	3	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0775	0.0291	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MKN1_STOMACH	0.92	1	0.1066	FALSE	499	1288	110	792	0	FALSE	ACH-000351
MKN1_STOMACH	MT-ND4--MT-ATP8	8	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7240	3	0	0.77	0.0775	0.0194	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN1_STOMACH	0	0.77	0.0969	FALSE	231	217	16	283	0	FALSE	ACH-000351
MKN1_STOMACH	NSD1--ZNF346	7	6	NSD1	25975	chr5:176694719:+	ZNF346	49683	chr5:176477704:+	ONLY_REF_SPLICE	YES	28	35	0.32	0.27	0.0678	0.0581	YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],LOCAL_REARRANGEMENT:+:[51836],NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346	MKN1_STOMACH	0.27	0.32	0.1259	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	RHPN2--ZNF507	6	10	RHPN2	2221	chr19:33535155:-	ZNF507	23213	chr19:32838151:+	ONLY_REF_SPLICE	YES	191	55	0.08	0.23	0.0581	0.0969	RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2,ZNF507->chr19:32836500-32878573:+,zinc_finger_protein_507	MKN1_STOMACH	0.08	0.23	0.155	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	RP11-123O10.4--GRIP1	7	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0678	0.0581	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MKN1_STOMACH	1	1	0.1259	FALSE	93	270	15	244	0	FALSE	ACH-000351
MKN1_STOMACH	RETSAT--C2orf68	8	1	RETSAT	6143	chr2:85573098:-	C2orf68	15511	chr2:85836709:-	ONLY_REF_SPLICE	YES	91	54	0.09	0.14	0.0775	0.0097	RETSAT->chr2:85569211-85581743:-,retinol_saturase_(all-trans-retinol_13,14-reductase),C2orf68->chr2:85833777-85839189:-,chromosome_2_open_reading_frame_68	MKN1_STOMACH	0.09	0.14	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	RP11-444D3.1--SOX5	8	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0775	0.0097	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MKN1_STOMACH	1	1	0.0872	TRUE	477	1352	189	275	0	FALSE	ACH-000351
MKN1_STOMACH	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0775	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN1_STOMACH	1	1	0.0775	FALSE	230	198	14	283	0	FALSE	ACH-000351
MKN1_STOMACH	PSMD11--RHBDL3	7	4	PSMD11	3734	chr17:30774064:+	RHBDL3	23126	chr17:30611678:+	ONLY_REF_SPLICE	YES	103	2	0.1	0.85	0.0678	0.0388	PSMD11->chr17:30771279-30810336:+,proteasome_26S_subunit,_non-ATPase_11,RHBDL3->chr17:30593195-30651680:+,rhomboid,_veinlet-like_3_(Drosophila)	MKN1_STOMACH	0.1	0.85	0.1066	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	RP11-401O9.3--CTC-297N7.11	7	4	RP11-401O9.3	2246	chr17:10228284:+	CTC-297N7.11	7706	chr17:10309465:+	ONLY_REF_SPLICE	YES	10	0	0.52	1	0.0678	0.0388	NEIGHBORS[41686],RP11-401O9.3->chr17:10223709-10244775:+,CTC-297N7.11->chr17:10286461-10527203:+	MKN1_STOMACH	0.52	1	0.1066	FALSE	0	1	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	GLB1--SUSD5	7	3	GLB1	5569	chr3:33109722:-	SUSD5	32166	chr3:33216566:-	ONLY_REF_SPLICE	YES	66	4	0.13	0.71	0.0678	0.0291	LOCAL_REARRANGEMENT:-:[52815],GLB1->Oncogene{Bushman},chr3:33038100-33138722:-,galactosidase_beta_1,SUSD5->chr3:33191537-33260707:-,sushi_domain_containing_5	MKN1_STOMACH	0.13	0.71	0.0969	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	FTH1--ACTB	7	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	7677	0	0	1	0.0678	0.0194	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MKN1_STOMACH	0	1	0.0872	FALSE	1	0	0	97	0	FALSE	ACH-000351
MKN1_STOMACH	RP11-384J4.2--NOVA1-AS1	6	6	RP11-384J4.2	2280	chr14:27312862:+	NOVA1-AS1	20652	chr14:27267120:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0581	0.0581	LOCAL_REARRANGEMENT:+:[30261],RP11-384J4.2->chr14:27305934-27629626:+,NOVA1-AS1->NOVA1_antisense_RNA_1_(head_to_head),chr14:27067618-27275673:+	MKN1_STOMACH	1	1	0.1162	TRUE	0	0	0	2	0	TRUE	ACH-000351
MKN1_STOMACH	MT-ND6--MT-TE	7	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0678	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MKN1_STOMACH	1	1	0.0678	FALSE	499	1288	110	792	0	FALSE	ACH-000351
MKN1_STOMACH	RP11-680G10.1--GSE1	6	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	18	1	0.36	0.0581	0.0388	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MKN1_STOMACH	0.36	1	0.0969	TRUE	458	1351	185	561	0	FALSE	ACH-000351
MKN1_STOMACH	NSD1--ZNF346	6	3	NSD1	25975	chr5:176694719:+	ZNF346	50917	chr5:176489059:+	ONLY_REF_SPLICE	YES	28	36	0.24	0.2	0.0581	0.0291	YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],LOCAL_REARRANGEMENT:+:[51836],NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346	MKN1_STOMACH	0.2	0.24	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	AC004980.7--SRRM3	5	5	AC004980.7	1502	chr7:76179178:+	SRRM3	12327	chr7:75864346:+	ONLY_REF_SPLICE	YES	14	0	0.42	1	0.0484	0.0484	AC004980.7->chr7:76178677-76257299:+,SRRM3->chr7:75831216-75916605:+,serine/arginine_repetitive_matrix_3	MKN1_STOMACH	0.42	1	0.0968	TRUE	0	2	0	1	2	TRUE	ACH-000351
MKN1_STOMACH	AP003900.6--AC011718.2	5	5	AP003900.6	1122	chr21:11169841:+	AC011718.2	11864	chr22:20653813:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0484	0.0484	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MKN1_STOMACH	1	1	0.0968	TRUE	0	3	0	38	3	FALSE	ACH-000351
MKN1_STOMACH	AP003900.6--AC011718.2	3	13	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	3	0	0.84	1	0.0291	0.1259	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MKN1_STOMACH	0.84	1	0.155	TRUE	0	0	0	21	0	FALSE	ACH-000351
MKN1_STOMACH	COX8A--NAA40	3	13	COX8A	1188	chr11:63742266:+	NAA40	9507	chr11:63719879:+	ONLY_REF_SPLICE	YES	1305	41	0.01	0.28	0.0291	0.1259	LOCAL_REARRANGEMENT:+:[17279],COX8A->chr11:63742079-63744015:+,cytochrome_c_oxidase_subunit_8A,NAA40->N(alpha)-acetyltransferase_40,_NatD_catalytic_subunit,chr11:63706431-63724800:+	MKN1_STOMACH	0.01	0.28	0.155	TRUE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	MT-ND4--MT-ATP8	6	1	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	YES	6580	0	0	1	0.0581	0.0097	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN1_STOMACH	0	1	0.0678	FALSE	231	204	14	283	0	FALSE	ACH-000351
MKN1_STOMACH	NSD1--ZNF346	5	5	NSD1	25975	chr5:176694719:+	ZNF346	49731	chr5:176477752:+	ONLY_REF_SPLICE	YES	28	34	0.26	0.23	0.0484	0.0484	YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],LOCAL_REARRANGEMENT:+:[51836],NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346	MKN1_STOMACH	0.23	0.26	0.0968	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	MT-ND4--MT-ATP8	5	3	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1470	34	0.01	0.19	0.0484	0.0291	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN1_STOMACH	0.01	0.19	0.0775	FALSE	216	209	16	281	0	FALSE	ACH-000351
MKN1_STOMACH	MT-ND6--MT-TE	5	3	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0484	0.0291	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MKN1_STOMACH	0.89	1	0.0775	FALSE	499	1288	110	792	0	FALSE	ACH-000351
MKN1_STOMACH	CECR7--AC008132.1	4	6	CECR7	1775	chr22:17518234:+	AC008132.1	14128	chr22:18724072:+	ONLY_REF_SPLICE	YES	5	0	0.67	1	0.0388	0.0581	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	MKN1_STOMACH	0.67	1	0.0969	TRUE	0	0	0	5	0	TRUE	ACH-000351
MKN1_STOMACH	DNM2--SLC44A2	5	2	DNM2	1325	chr19:10829079:+	SLC44A2	42946	chr19:10736929:+	ONLY_REF_SPLICE	YES	142	52	0.05	0.12	0.0484	0.0194	LOCAL_REARRANGEMENT:+:[73520],DNM2->chr19:10828755-10944164:+,dynamin_2,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	MKN1_STOMACH	0.05	0.12	0.0678	TRUE	0	1	0	2	0	FALSE	ACH-000351
MKN1_STOMACH	CPNE1--RBM39	5	1	CPNE1	4976	chr20:34241450:-	RBM39	22004	chr20:34320057:-	ONLY_REF_SPLICE	YES	125	401	0.05	0.01	0.0484	0.0097	LOCAL_REARRANGEMENT:-:[38653],CPNE1->chr20:34213953-34252878:-,copine_1,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	MKN1_STOMACH	0.01	0.05	0.0581	FALSE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	LSM14A--SCGB2B2	5	1	LSM14A	6089	chr19:34699956:+	SCGB2B2	24756	chr19:35084504:-	ONLY_REF_SPLICE	YES	318	2	0.02	0.75	0.0484	0.0097	LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+,SCGB2B2->chr19:35084234-35166604:-,secretoglobin_family_2B_member_2	MKN1_STOMACH	0.02	0.75	0.0581	TRUE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	MSL2--STAG1	5	1	MSL2	2092	chr3:135914992:-	STAG1	37763	chr3:136117671:-	ONLY_REF_SPLICE	YES	0	28	1	0.18	0.0484	0.0097	YOSHIHARA_TCGA_num_samples[BRCA:1|OV:1],MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila),STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1	MKN1_STOMACH	0.18	1	0.0581	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	MT-ND4--MT-ATP8	5	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	8309	0	0	1	0.0484	0.0097	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN1_STOMACH	0	1	0.0581	FALSE	231	205	14	283	0	FALSE	ACH-000351
MKN1_STOMACH	MT-ND4--MT-ATP8	4	4	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	8181	0	0	1	0.0388	0.0388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN1_STOMACH	0	1	0.0776	FALSE	231	217	16	283	0	FALSE	ACH-000351
MKN1_STOMACH	MT-ND4--MT-ATP8	4	3	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	7209	0	0	1	0.0388	0.0291	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN1_STOMACH	0	1	0.0679	FALSE	231	217	16	283	0	FALSE	ACH-000351
MKN1_STOMACH	ARHGAP39--BOP1	4	2	ARHGAP39	2406	chr8:145830920:-	BOP1	23220	chr8:145500292:-	ONLY_REF_SPLICE	YES	19	131	0.24	0.04	0.0388	0.0194	ARHGAP39->Rho_GTPase_activating_protein_39,chr8:145754563-145911194:-,BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-	MKN1_STOMACH	0.04	0.24	0.0582	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	MT-ND4--MT-ATP8	4	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7069	34	0	0.15	0.0388	0.0194	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN1_STOMACH	0	0.15	0.0582	FALSE	231	217	16	283	0	FALSE	ACH-000351
MKN1_STOMACH	PARVA--USP47	4	2	PARVA	1599	chr11:12399330:+	USP47	49130	chr11:11969492:+	ONLY_REF_SPLICE	YES	132	94	0.04	0.06	0.0388	0.0194	PARVA->chr11:12398732-12552348:+,parvin_alpha,USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47	MKN1_STOMACH	0.04	0.06	0.0582	TRUE	0	1	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	USP32--GGA3	3	6	USP32	4918	chr17:58422842:-	GGA3	47824	chr17:73245089:-	ONLY_REF_SPLICE	YES	22	1	0.29	0.9	0.0291	0.0581	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,GGA3->chr17:73232694-73258444:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_3	MKN1_STOMACH	0.29	0.9	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	FAM168A--RAB6A	4	1	FAM168A	1267	chr11:73308968:-	RAB6A	21682	chr11:73441868:-	ONLY_REF_SPLICE	YES	46	103	0.1	0.05	0.0388	0.0097	LOCAL_REARRANGEMENT:-:[77449],FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A,RAB6A->RAB6A,_member_RAS_oncogene_family,chr11:73386683-73472182:-	MKN1_STOMACH	0.05	0.1	0.0485	TRUE	0	1	0	4	1	FALSE	ACH-000351
MKN1_STOMACH	PIP5K1C--ZFR2	4	1	PIP5K1C	5344	chr19:3660964:-	ZFR2	51442	chr19:3805334:-	INCL_NON_REF_SPLICE	YES	37	0	0.12	1	0.0388	0.0097	PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma,ZFR2->chr19:3804022-3869030:-,zinc_finger_RNA_binding_protein_2	MKN1_STOMACH	0.12	1	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	RHBDD1--IRS1	4	1	RHBDD1	7125	chr2:227732034:+	IRS1	28722	chr2:227600966:-	ONLY_REF_SPLICE	YES	13	12	0.28	0.29	0.0388	0.0097	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Thyroid=1},LOCAL_INVERSION:+:-:[35822],RHBDD1->chr2:227700297-227863931:+,rhomboid_domain_containing_1,IRS1->chr2:227596033-227664475:-,insulin_receptor_substrate_1	MKN1_STOMACH	0.28	0.29	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	15	1	0.25	0.0388	0.0097	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MKN1_STOMACH	0.25	1	0.0485	FALSE	16	356	14	466	0	FALSE	ACH-000351
MKN1_STOMACH	SCARB1--UBC	4	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	221	44	0.02	0.1	0.0388	0.0097	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	MKN1_STOMACH	0.02	0.1	0.0485	TRUE	55	66	6	101	0	FALSE	ACH-000351
MKN1_STOMACH	AGO3--FLYWCH1	4	0	AGO3	1097	chr1:36396415:+	FLYWCH1	48577	chr16:2979614:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+,FLYWCH1->FLYWCH-type_zinc_finger_1,chr16:2961938-3001209:+	MKN1_STOMACH	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	CPNE1--RBM39	4	0	CPNE1	3826	chr20:34243124:-	RBM39	22004	chr20:34320057:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	LOCAL_REARRANGEMENT:-:[38653],CPNE1->chr20:34213953-34252878:-,copine_1,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	MKN1_STOMACH	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	MT-ND4--MT-ATP8	3	4	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	7778	0	0	1	0.0291	0.0388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN1_STOMACH	0	1	0.0679	FALSE	231	217	16	283	0	FALSE	ACH-000351
MKN1_STOMACH	NRIP1--AF127936.7	3	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.3	1	0.0291	0.0388	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MKN1_STOMACH	0.3	1	0.0679	FALSE	164	806	69	479	0	FALSE	ACH-000351
MKN1_STOMACH	ESRRA--DNAJC4	3	2	ESRRA	5078	chr11:64082383:+	DNAJC4	13527	chr11:64001366:+	ONLY_REF_SPLICE	YES	163	43	0.03	0.1	0.0291	0.0194	LOCAL_REARRANGEMENT:+:[71286],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,DNAJC4->DnaJ_heat_shock_protein_family_(Hsp40)_member_C4,chr11:63997750-64001758:+	MKN1_STOMACH	0.03	0.1	0.0485	TRUE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	FTH1--ACTB	3	2	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	7718	0	0	1	0.0291	0.0194	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MKN1_STOMACH	0	1	0.0485	FALSE	1	0	0	97	0	FALSE	ACH-000351
MKN1_STOMACH	MT-ND6--MT-TE	3	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0291	0.0194	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MKN1_STOMACH	1	1	0.0485	FALSE	499	1288	110	792	0	FALSE	ACH-000351
MKN1_STOMACH	ELP6--MAP4	3	1	ELP6	5925	chr3:47545820:-	MAP4	23515	chr3:47969840:-	ONLY_REF_SPLICE	YES	92	201	0.04	0.02	0.0291	0.0097	ELP6->chr3:47537130-47555251:-,elongator_acetyltransferase_complex_subunit_6,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	MKN1_STOMACH	0.02	0.04	0.0388	TRUE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	FTH1--ACTB	3	1	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	6794	0	0	1	0.0291	0.0097	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MKN1_STOMACH	0	1	0.0388	FALSE	1	0	0	97	0	FALSE	ACH-000351
MKN1_STOMACH	LSM14A--SCGB2B2	3	1	LSM14A	6089	chr19:34699956:+	SCGB2B2	23996	chr19:35085264:-	ONLY_REF_SPLICE	YES	318	1	0.01	0.8	0.0291	0.0097	LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+,SCGB2B2->chr19:35084234-35166604:-,secretoglobin_family_2B_member_2	MKN1_STOMACH	0.01	0.8	0.0388	FALSE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	PSMD11--RHBDL3	3	1	PSMD11	3734	chr17:30774064:+	RHBDL3	24845	chr17:30615811:+	ONLY_REF_SPLICE	YES	103	3	0.04	0.57	0.0291	0.0097	PSMD11->chr17:30771279-30810336:+,proteasome_26S_subunit,_non-ATPase_11,RHBDL3->chr17:30593195-30651680:+,rhomboid,_veinlet-like_3_(Drosophila)	MKN1_STOMACH	0.04	0.57	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	ASS1--MT-CO3	3	0	ASS1	7359	chr9:133339534:+	MT-CO3	21796	chrM:9549:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0291	0	ASS1->argininosuccinate_synthase_1,chr9:133320316-133376661:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MKN1_STOMACH	1	1	0.0291	FALSE	0	0	0	12	0	FALSE	ACH-000351
MKN1_STOMACH	LRCH3--SENP5	3	0	LRCH3	20875	chr3:197593090:+	SENP5	38046	chr3:196612022:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	LRCH3->chr3:197518097-197615307:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_3,SENP5->SUMO1/sentrin_specific_peptidase_5,chr3:196594727-196661585:+	MKN1_STOMACH	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0291	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN1_STOMACH	1	1	0.0291	FALSE	230	193	14	283	0	FALSE	ACH-000351
MKN1_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0291	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN1_STOMACH	1	1	0.0291	FALSE	231	205	14	283	0	FALSE	ACH-000351
MKN1_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0291	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN1_STOMACH	1	1	0.0291	FALSE	231	217	16	283	0	FALSE	ACH-000351
MKN1_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0291	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MKN1_STOMACH	1	1	0.0291	FALSE	231	217	16	283	0	FALSE	ACH-000351
MKN1_STOMACH	NRIP1--AF127936.7	2	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.23	1	0.0194	0.0388	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MKN1_STOMACH	0.23	1	0.0582	FALSE	125	705	46	456	0	FALSE	ACH-000351
MKN1_STOMACH	PAWR--AP000695.6	3	0	PAWR	2369	chr12:80083509:-	AP000695.6	28782	chr21:37852529:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,AP000695.6->chr21:37802658-37853368:+	MKN1_STOMACH	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	PSMD11--RHBDL3	3	0	PSMD11	3734	chr17:30774064:+	RHBDL3	26070	chr17:30621313:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	PSMD11->chr17:30771279-30810336:+,proteasome_26S_subunit,_non-ATPase_11,RHBDL3->chr17:30593195-30651680:+,rhomboid,_veinlet-like_3_(Drosophila)	MKN1_STOMACH	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	RP11-305B6.3--RP11-99L13.1	3	0	RP11-305B6.3	1069	chr14:44853680:-	RP11-99L13.1	10857	chr14:44914025:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	LOCAL_REARRANGEMENT:-:[60202],RP11-305B6.3->chr14:44464984-44853748:-,RP11-99L13.1->chr14:44913950-44949821:-	MKN1_STOMACH	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	SNX8--MAD1L1	2	3	SNX8	3400	chr7:2353963:-	MAD1L1	41411	chr7:2188873:-	ONLY_REF_SPLICE	YES	11	52	0.31	0.09	0.0194	0.0291	NEIGHBORS[18527],SNX8->chr7:2291405-2393953:-,sorting_nexin_8,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	MKN1_STOMACH	0.09	0.31	0.0485	FALSE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	RP11-344E13.3--UBBP4	2	2	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0194	0.0194	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	MKN1_STOMACH	0.8	1	0.0388	TRUE	23	13	0	54	0	FALSE	ACH-000351
MKN1_STOMACH	RP11-384J4.2--NOVA1-AS1	2	2	RP11-384J4.2	2280	chr14:27312862:+	NOVA1-AS1	21769	chr14:27275442:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0194	0.0194	LOCAL_REARRANGEMENT:+:[30261],RP11-384J4.2->chr14:27305934-27629626:+,NOVA1-AS1->NOVA1_antisense_RNA_1_(head_to_head),chr14:27067618-27275673:+	MKN1_STOMACH	0.8	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	ASH1L--GON4L	2	1	ASH1L	1655	chr1:155531944:-	GON4L	52886	chr1:155774932:-	ONLY_REF_SPLICE	YES	10	22	0.23	0.12	0.0194	0.0097	ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-,GON4L->chr1:155719508-155829191:-,gon-4_like	MKN1_STOMACH	0.12	0.23	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	CEP152--SHC4	2	1	CEP152	20434	chr15:49052332:-	SHC4	38526	chr15:49217146:-	ONLY_REF_SPLICE	YES	14	0	0.18	1	0.0194	0.0097	LOCAL_REARRANGEMENT:-:[12589],CEP152->centrosomal_protein_152,chr15:49005125-49103343:-,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	MKN1_STOMACH	0.18	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	EML4--MTA3	2	1	EML4	4755	chr2:42483770:+	MTA3	62068	chr2:42980514:+	ONLY_REF_SPLICE	YES	52	0	0.05	1	0.0194	0.0097	EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	MKN1_STOMACH	0.05	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	ESRRA--DNAJC4	2	1	ESRRA	4534	chr11:64081839:+	DNAJC4	13527	chr11:64001366:+	ONLY_REF_SPLICE	YES	175	43	0.02	0.07	0.0194	0.0097	LOCAL_REARRANGEMENT:+:[71286],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,DNAJC4->DnaJ_heat_shock_protein_family_(Hsp40)_member_C4,chr11:63997750-64001758:+	MKN1_STOMACH	0.02	0.07	0.0291	TRUE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	RP11-634B7.4--TRIM58	2	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	5	1	0.38	0.0194	0.0097	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	MKN1_STOMACH	0.38	1	0.0291	TRUE	158	633	76	73	0	FALSE	ACH-000351
MKN1_STOMACH	AC104389.28--HBE1	2	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MKN1_STOMACH	1	1	0.0194	TRUE	0	16	0	53	13	FALSE	ACH-000351
MKN1_STOMACH	AGO3--FLYWCH1	2	0	AGO3	1081	chr1:36396399:+	FLYWCH1	48577	chr16:2979614:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+,FLYWCH1->FLYWCH-type_zinc_finger_1,chr16:2961938-3001209:+	MKN1_STOMACH	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	ATL2--HNRNPLL	2	0	ATL2	1143	chr2:38604285:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	MKN1_STOMACH	1	1	0.0194	TRUE	1	4	0	6	0	TRUE	ACH-000351
MKN1_STOMACH	ATL2--HNRNPLL	2	0	ATL2	1143	chr2:38604285:-	HNRNPLL	26994	chr2:38813023:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	MKN1_STOMACH	1	1	0.0194	TRUE	0	1	0	4	0	TRUE	ACH-000351
MKN1_STOMACH	ESRRA--DNAJC4	1	4	ESRRA	5078	chr11:64082383:+	DNAJC4	12337	chr11:64000176:+	ONLY_REF_SPLICE	NO	163	41	0.03	0.11	0.0097	0.0388	LOCAL_REARRANGEMENT:+:[71286],ESRRA->Oncogene{Bushman},chr11:64073044-64084215:+,estrogen_related_receptor_alpha,DNAJC4->DnaJ_heat_shock_protein_family_(Hsp40)_member_C4,chr11:63997750-64001758:+	MKN1_STOMACH	0.03	0.11	0.0485	TRUE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	FAM69A--SLC1A3	2	0	FAM69A	1125	chr1:93426933:-	SLC1A3	18494	chr5:36671131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	FAM69A->chr1:93307724-93427057:-,family_with_sequence_similarity_69_member_A,SLC1A3->chr5:36606457-36688436:+,solute_carrier_family_1_member_3	MKN1_STOMACH	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MKN1_STOMACH	1	1	0.0194	FALSE	25	145	6	90	0	FALSE	ACH-000351
MKN1_STOMACH	NUDT1--HACE1	2	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	MKN1_STOMACH	1	1	0.0194	TRUE	1	20	0	20	17	FALSE	ACH-000351
MKN1_STOMACH	PAWR--PCP4	2	0	PAWR	2369	chr12:80083509:-	PCP4	30103	chr21:41270401:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,PCP4->Purkinje_cell_protein_4,chr21:41239243-41301322:+	MKN1_STOMACH	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	MKN1_STOMACH	1	1	0.0194	TRUE	0	1	0	17	0	TRUE	ACH-000351
MKN1_STOMACH	STARD9--GANC	2	0	STARD9	3291	chr15:42877835:+	GANC	54702	chr15:42584933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	STARD9->StAR_related_lipid_transfer_domain_containing_9,chr15:42867857-43013179:+,GANC->chr15:42565431-42645864:+,glucosidase_alpha,_neutral_C	MKN1_STOMACH	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MKN1_STOMACH	1	1	0.0194	TRUE	62	24	1	171	0	FALSE	ACH-000351
MKN1_STOMACH	ZBTB43--MVB12B	2	0	ZBTB43	1127	chr9:129567411:+	MVB12B	29258	chr9:129265456:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	ZBTB43->chr9:129567285-129600489:+,zinc_finger_and_BTB_domain_containing_43,MVB12B->chr9:129089128-129269320:+,multivesicular_body_subunit_12B	MKN1_STOMACH	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000351
MKN1_STOMACH	UHRF1BP1L--ANKS1B	1	2	UHRF1BP1L	2403	chr12:100522358:-	ANKS1B	33688	chr12:100219167:-	ONLY_REF_SPLICE	YES	9	1	0.25	0.75	0.0097	0.0194	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[43801],UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	MKN1_STOMACH	0.25	0.75	0.0291	FALSE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	AP003900.6--AC011718.2	1	1	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	2	6	0.5	0.25	0.0097	0.0097	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MKN1_STOMACH	0.25	0.5	0.0194	TRUE	0	1	0	24	1	FALSE	ACH-000351
MKN1_STOMACH	ELP6--MAP4	1	1	ELP6	8332	chr3:47543140:-	MAP4	23515	chr3:47969840:-	ONLY_REF_SPLICE	YES	81	201	0.02	0.01	0.0097	0.0097	ELP6->chr3:47537130-47555251:-,elongator_acetyltransferase_complex_subunit_6,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	MKN1_STOMACH	0.01	0.02	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	FGFR1OP2--ASUN	1	1	FGFR1OP2	1328	chr12:27091643:+	ASUN	19473	chr12:27081838:-	ONLY_REF_SPLICE	YES	421	218	0	0.01	0.0097	0.0097	LOCAL_INVERSION:+:-:[57],FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	MKN1_STOMACH	0	0.01	0.0194	FALSE	0	2	0	3	0	FALSE	ACH-000351
MKN1_STOMACH	FGFR1OP2--ASUN	1	1	FGFR1OP2	5274	chr12:27110676:+	ASUN	19473	chr12:27081838:-	ONLY_REF_SPLICE	NO	543	218	0	0.01	0.0097	0.0097	LOCAL_INVERSION:+:-:[57],FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	MKN1_STOMACH	0	0.01	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	LSM14A--SCGB2B2	1	1	LSM14A	6089	chr19:34699956:+	SCGB2B2	20692	chr19:35099660:-	ONLY_REF_SPLICE	YES	318	0	0.01	1	0.0097	0.0097	LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+,SCGB2B2->chr19:35084234-35166604:-,secretoglobin_family_2B_member_2	MKN1_STOMACH	0.01	1	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	MANBA--UBE2D3	1	1	MANBA	9780	chr4:103610731:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	NO	27	358	0.07	0.01	0.0097	0.0097	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	MKN1_STOMACH	0.01	0.07	0.0194	FALSE	6	5	0	8	0	FALSE	ACH-000351
MKN1_STOMACH	MSL2--STAG1	1	1	MSL2	3270	chr3:135913814:-	STAG1	38844	chr3:136096594:-	ONLY_REF_SPLICE	YES	25	18	0.07	0.1	0.0097	0.0097	YOSHIHARA_TCGA_num_samples[BRCA:1|OV:1],MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila),STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1	MKN1_STOMACH	0.07	0.1	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	PTK2--TRAPPC9	1	1	PTK2	2092	chr8:142011224:-	TRAPPC9	67249	chr8:141461482:-	ONLY_REF_SPLICE	NO	85	10	0.02	0.17	0.0097	0.0097	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	MKN1_STOMACH	0.02	0.17	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	RP11-307P5.1--SASH1	1	1	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	NO	0	4	1	0.33	0.0097	0.0097	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	MKN1_STOMACH	0.33	1	0.0194	TRUE	0	2	0	37	2	FALSE	ACH-000351
MKN1_STOMACH	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0097	0.0097	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MKN1_STOMACH	1	1	0.0194	TRUE	274	363	69	150	0	FALSE	ACH-000351
MKN1_STOMACH	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0097	0.0097	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MKN1_STOMACH	1	1	0.0194	FALSE	467	2173	244	435	0	FALSE	ACH-000351
MKN1_STOMACH	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0097	0.0097	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MKN1_STOMACH	1	1	0.0194	FALSE	515	4851	409	746	0	FALSE	ACH-000351
MKN1_STOMACH	RRP7A--NIF3L1	1	1	RRP7A	2798	chr22:42914011:-	NIF3L1	15459	chr2:201756641:+	ONLY_REF_SPLICE	YES	71	36	0.03	0.05	0.0097	0.0097	RRP7A->chr22:42905974-42915808:-,ribosomal_RNA_processing_7_homolog_A,NIF3L1->NGG1_interacting_factor_3_like_1,chr2:201754050-201768655:+	MKN1_STOMACH	0.03	0.05	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000351
MKN1_STOMACH	SAMD12--EXT1	1	1	SAMD12	4644	chr8:119391799:-	EXT1	23526	chr8:118849440:-	ONLY_REF_SPLICE	YES	18	251	0.1	0.01	0.0097	0.0097	NEIGHBORS[77606],SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1	MKN1_STOMACH	0.01	0.1	0.0194	FALSE	0	6	0	3	0	FALSE	ACH-000351
MKN1_STOMACH	STK24--DOCK9	1	1	STK24	2156	chr13:99228999:-	DOCK9	72398	chr13:99462545:-	ONLY_REF_SPLICE	YES	13	21	0.13	0.09	0.0097	0.0097	STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24,DOCK9->chr13:99445741-99738879:-,dedicator_of_cytokinesis_9	MKN1_STOMACH	0.09	0.13	0.0194	TRUE	0	1	0	2	1	TRUE	ACH-000351
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	741	330	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	1	1	1	8.2074	3.6551	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	11.8625	TRUE	361	258	24	38	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF208--AP001172.2	438	237	ZNF208	1158	chr19:22193594:-	AP001172.2	20035	chr21:17664469:-	ONLY_REF_SPLICE	YES	7	0	0.99	1	4.8513	2.625	ZNF208->chr19:22115760-22193751:-,zinc_finger_protein_208,AP001172.2->chr21:17664112-17680454:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	7.4763	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKCSH--CD74	255	0	PRKCSH	4974	chr19:11552172:+	CD74	15885	chr5:149792292:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.8244	0	PRKCSH->chr19:11546109-11561783:+,protein_kinase_C_substrate_80K-H,CD74->CD74_molecule,Oncogene{Bushman},chr5:149781200-149792492:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.8244	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF208--AP001172.2	43	245	ZNF208	2252	chr19:22192290:-	AP001172.2	20035	chr21:17664469:-	ONLY_REF_SPLICE	YES	2	0	0.99	1	0.4763	2.7137	ZNF208->chr19:22115760-22193751:-,zinc_finger_protein_208,AP001172.2->chr21:17664112-17680454:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	3.19	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	15	353	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	5570	chr1:149591759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1661	3.9099	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	4.076	TRUE	361	258	24	38	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF627--ACP5	81	86	ZNF627	6303	chr19:11708445:+	ACP5	16590	chr19:11688494:-	ONLY_REF_SPLICE	YES	118	137	0.59	0.55	0.8972	0.9525	NEIGHBORS_OVERLAP:+:-:[4348],ZNF627->chr19:11670189-11729950:+,zinc_finger_protein_627,ACP5->acid_phosphatase_5,_tartrate_resistant,chr19:11685475-11689823:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.59	1.8497	FALSE	0	0	0	1	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKS3--SEPT12	68	41	ANKS3	3685	chr16:4779981:-	SEPT12	26798	chr16:4829787:-	ONLY_REF_SPLICE	YES	50	2	0.69	0.98	0.7532	0.4541	LOCAL_REARRANGEMENT:-:[43291],ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-,SEPT12->chr16:4827670-4838522:-,septin_12	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.98	1.2073	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF625--LINC00478	67	38	ZNF625	2584	chr19:12258210:-	LINC00478	12553	chr21:17553911:+	ONLY_REF_SPLICE	YES	11	0	0.91	1	0.7421	0.4209	ZNF625->chr19:12251032-12267546:-,zinc_finger_protein_625,LINC00478->chr21:17442842-17999716:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	1.163	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	60	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6646	0.2215	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8861	TRUE	508	994	45	981	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	52	48	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	52	23	0.66	0.81	0.576	0.5317	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	0.81	1.1077	TRUE	267	562	48	632	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	45	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4984	0.0886	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.587	FALSE	462	80	0	856	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	44	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	247	5	0.15	0.9	0.4874	0.0111	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.9	0.4985	TRUE	519	3926	326	965	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00478--PTBP1	28	54	LINC00478	5289	chr21:17603435:+	PTBP1	28736	chr19:803561:+	ONLY_REF_SPLICE	YES	11	237	0.88	0.26	0.3101	0.5981	LINC00478->chr21:17442842-17999716:+,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.88	0.9082	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	36	7	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3987	0.0775	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4762	FALSE	46	201	11	112	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	20	37	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	50	24	0.53	0.7	0.2215	0.4098	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	0.7	0.6313	TRUE	267	562	48	632	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	17	20	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1883	0.2215	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4098	TRUE	13	49	2	38	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	20	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.92	1	0.2215	0.0443	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.2658	FALSE	292	1546	117	613	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	21	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2326	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2326	TRUE	0	0	0	518	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKS3--SEPT12	9	43	ANKS3	3685	chr16:4779981:-	SEPT12	25557	chr16:4833558:-	ONLY_REF_SPLICE	YES	50	2	0.51	0.96	0.0997	0.4763	LOCAL_REARRANGEMENT:-:[43291],ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-,SEPT12->chr16:4827670-4838522:-,septin_12	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.96	0.576	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PTCD3	19	0	C17orf76-AS1	3754	chr17:16344889:+	PTCD3	29917	chr2:86359744:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2104	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2104	TRUE	0	0	0	4	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK8--RP11-509J21.1	15	7	DOCK8	30390	chr9:371566:+	RP11-509J21.1	75562	chr9:3671474:+	ONLY_REF_SPLICE	YES	59	14	0.27	0.61	0.1661	0.0775	DOCK8->chr9:214854-465259:+,dedicator_of_cytokinesis_8,RP11-509J21.1->chr9:3526723-3671646:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.61	0.2436	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK8--RP11-509J21.2	16	3	DOCK8	30390	chr9:371566:+	RP11-509J21.2	68848	chr9:3647338:+	INCL_NON_REF_SPLICE	YES	59	0	0.24	1	0.1772	0.0332	DOCK8->chr9:214854-465259:+,dedicator_of_cytokinesis_8,RP11-509J21.2->chr9:3647335-3648338:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.2104	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAC2--MIR1302-10	16	3	UBAC2	1166	chr13:99853193:+	MIR1302-10	22407	chr15:102500185:-	ONLY_REF_SPLICE	YES	11	1	0.63	0.95	0.1772	0.0332	UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,MIR1302-10->chr15:102500051-102501611:-,microRNA_1302-10	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.95	0.2104	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00478--PTBP1	11	22	LINC00478	5289	chr21:17603435:+	PTBP1	31583	chr19:806408:+	ONLY_REF_SPLICE	YES	11	575	0.75	0.05	0.1218	0.2437	LINC00478->chr21:17442842-17999716:+,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.75	0.3655	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKS3--SEPT12	4	43	ANKS3	3685	chr16:4779981:-	SEPT12	25046	chr16:4834069:-	ONLY_REF_SPLICE	YES	50	0	0.48	1	0.0443	0.4763	LOCAL_REARRANGEMENT:-:[43291],ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-,SEPT12->chr16:4827670-4838522:-,septin_12	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	0.5206	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	12	10	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1329	0.1108	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2437	FALSE	462	80	0	856	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EPS15L1--PALM3	12	0	EPS15L1	1173	chr19:16582724:-	PALM3	35553	chr19:14167616:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1329	0	EPS15L1->Oncogene{Bushman},chr19:16466050-16582896:-,epidermal_growth_factor_receptor_pathway_substrate_15-like_1,PALM3->chr19:14164177-14169971:-,paralemmin_3	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1329	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00478--PTBP1	10	8	LINC00478	5289	chr21:17603435:+	PTBP1	33535	chr19:808360:+	ONLY_REF_SPLICE	YES	11	453	0.62	0.04	0.1108	0.0886	LINC00478->chr21:17442842-17999716:+,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.62	0.1994	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GATAD2A--AC078899.3	10	5	GATAD2A	9305	chr19:19576423:+	AC078899.3	25852	chr19:20405898:+	ONLY_REF_SPLICE	YES	632	0	0.02	1	0.1108	0.0554	GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,AC078899.3->chr19:20405898-20414603:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.1662	TRUE	0	0	0	1	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GMFG--TICAM1	9	9	GMFG	3006	chr19:39825901:-	TICAM1	10595	chr19:4818528:-	ONLY_REF_SPLICE	YES	731	0	0.02	1	0.0997	0.0997	GMFG->chr19:39818993-39833012:-,glia_maturation_factor_gamma,TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.1994	TRUE	0	0	0	1	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF625--LINC00478	7	13	ZNF625	1176	chr19:12267371:-	LINC00478	12553	chr21:17553911:+	ONLY_REF_SPLICE	YES	58	0	0.26	1	0.0775	0.144	ZNF625->chr19:12251032-12267546:-,zinc_finger_protein_625,LINC00478->chr21:17442842-17999716:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.2215	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--RPS25	9	1	RPS3	5589	chr11:75115118:+	RPS25	13355	chr11:118889029:-	INCL_NON_REF_SPLICE	YES	9205	125	0	0.07	0.0997	0.0111	HGNC_GENEFAM,RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.1108	TRUE	0	0	0	1	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARL15--GABRB2	7	8	ARL15	5950	chr5:53409032:-	GABRB2	18157	chr5:160886850:-	ONLY_REF_SPLICE	YES	22	0	0.41	1	0.0775	0.0886	ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,GABRB2->chr5:160715436-160976050:-,gamma-aminobutyric_acid_type_A_receptor_beta2_subunit	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	1	0.1661	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKS3--SEPT12	8	1	ANKS3	1223	chr16:4784157:-	SEPT12	26798	chr16:4829787:-	ONLY_REF_SPLICE	YES	7	2	0.56	0.82	0.0886	0.0111	LOCAL_REARRANGEMENT:-:[43291],ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-,SEPT12->chr16:4827670-4838522:-,septin_12	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	0.82	0.0997	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	5	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0775	0.0554	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1329	FALSE	189	492	56	216	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF625--LINC00478	2	25	ZNF625	2303	chr19:12258491:-	LINC00478	12553	chr21:17553911:+	ONLY_REF_SPLICE	YES	8	0	0.77	1	0.0222	0.2769	ZNF625->chr19:12251032-12267546:-,zinc_finger_protein_625,LINC00478->chr21:17442842-17999716:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.2991	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-408A13.2--NFIB	7	4	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0775	0.0443	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1218	TRUE	0	14	0	20	14	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL26L1--RP5-1028K7.2	6	6	RPL26L1	3454	chr5:172395602:+	RP5-1028K7.2	11965	chr17:38682696:+	ONLY_REF_SPLICE	YES	92	0	0.12	1	0.0665	0.0665	RPL26L1->chr5:172385732-172396774:+,ribosomal_protein_L26_like_1,RP5-1028K7.2->chr17:38673278-38683254:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.133	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GMFG--TICAM1	5	8	GMFG	2832	chr19:39826075:-	TICAM1	10595	chr19:4818528:-	ONLY_REF_SPLICE	YES	660	0	0.02	1	0.0554	0.0886	GMFG->chr19:39818993-39833012:-,glia_maturation_factor_gamma,TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.144	TRUE	0	0	0	1	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-498C9.2--APOE	7	0	RP11-498C9.2	1445	chr17:79801485:+	APOE	6815	chr19:45411031:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0775	0	RP11-498C9.2->chr17:79801041-79801834:+,APOE->apolipoprotein_E,chr19:45409011-45412650:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0775	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	15	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	4	0.82	0.82	0.0332	0.1661	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.82	0.1993	FALSE	189	492	56	216	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	5	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0554	0.0775	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1329	FALSE	515	4851	409	746	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	4	10	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	55	0	0.2	1	0.0443	0.1108	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.1551	FALSE	164	806	69	479	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	13	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0.144	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1772	FALSE	189	492	56	216	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	13	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.89	0.0332	0.144	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1772	FALSE	189	492	56	216	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GMFG--TICAM1	6	0	GMFG	2293	chr19:39826614:-	TICAM1	10595	chr19:4818528:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0665	0	GMFG->chr19:39818993-39833012:-,glia_maturation_factor_gamma,TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	5	3	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0554	0.0332	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0886	TRUE	67	49	0	25	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0.1108	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.144	FALSE	462	80	0	856	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-TL1	3	9	MT-ND1	1157	chrM:3463:+	MT-TL1	4992	chrM:3265:+	INCL_NON_REF_SPLICE	YES	9	0	0.57	1	0.0332	0.0997	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.1329	FALSE	210	95	5	49	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0.0111	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0665	FALSE	462	80	0	856	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	0	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0554	FALSE	189	492	56	216	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFIX--SLC38A8	4	3	NFIX	9082	chr19:13186485:+	SLC38A8	22261	chr16:84075764:-	ONLY_REF_SPLICE	YES	71	0	0.09	1	0.0443	0.0332	NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,SLC38A8->chr16:84043272-84076241:-,solute_carrier_family_38_member_8	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.0775	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	3	7	RP11-155G15.2	3309	chr5:96772337:+	RP11-1E3.1	9053	chr5:97004255:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0.0775	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1107	FALSE	0	1	0	8	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-321K16.1--SLC25A48	4	2	CTC-321K16.1	4781	chr5:134965066:+	SLC25A48	10390	chr5:135178105:+	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0443	0.0222	CTC-321K16.1->chr5:134895267-134970564:+,SLC25A48->chr5:135170338-135224326:+,solute_carrier_family_25_member_48	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0665	TRUE	0	3	0	3	3	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	4	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	4	0.6	0.6	0.0443	0.0222	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.6	0.0665	FALSE	16	356	14	466	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	13	1	0.32	0.0443	0.0222	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.0665	TRUE	458	1351	185	561	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0443	FALSE	183	104	9	328	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0443	FALSE	189	492	56	216	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0443	FALSE	189	492	56	216	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-TL1	4	0	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0443	FALSE	210	95	5	49	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-110I1.6--MT-ND4	4	0	RP11-110I1.6	2253	chr11:118916151:+	MT-ND4	5775	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	RP11-110I1.6->chr11:118914899-118916205:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0443	FALSE	0	0	0	4	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	4	0	WI2-1896O14.1	1077	chr1:144679893:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0443	TRUE	211	14	4	3	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC015691.13--AC104389.28	3	3	AC015691.13	3257	chr11:5612187:-	AC104389.28	8838	chr11:5368140:-	ONLY_REF_SPLICE	YES	0	4	1	0.6	0.0332	0.0332	NEIGHBORS[66670],AC015691.13->chr11:5593552-5646126:-,AC104389.28->chr11:5326206-5526882:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.0664	FALSE	3	3	0	1	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK8--RP11-509J21.3	3	1	DOCK8	30390	chr9:371566:+	RP11-509J21.3	69948	chr9:3690837:+	ONLY_REF_SPLICE	YES	59	5	0.06	0.44	0.0332	0.0111	DOCK8->chr9:214854-465259:+,dedicator_of_cytokinesis_8,RP11-509J21.3->chr9:3674546-3691814:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.44	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2322	19486	0	0	0.0332	0.0111	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0443	FALSE	183	104	9	328	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	29	0	0.19	1	0.0222	0.0554	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.0776	FALSE	125	705	46	456	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0111	0.0997	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1108	FALSE	76	45	6	15	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	1	8	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	7991	chr5:96856933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0111	0.0886	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0997	FALSE	0	1	1	12	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK8--RP11-509J21.1	1	7	DOCK8	30390	chr9:371566:+	RP11-509J21.1	75565	chr9:3671477:+	ONLY_REF_SPLICE	NO	59	13	0.12	0.38	0.0111	0.0775	DOCK8->chr9:214854-465259:+,dedicator_of_cytokinesis_8,RP11-509J21.1->chr9:3526723-3671646:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.38	0.0886	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	2	3	LINC00299	17125	chr2:8200478:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0.0332	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0554	TRUE	20	19	0	15	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	2	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0222	0.0222	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0444	TRUE	347	1186	183	220	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GATAD2A--AC078899.3	2	2	GATAD2A	9305	chr19:19576423:+	AC078899.3	26979	chr19:20408640:+	ONLY_REF_SPLICE	YES	632	0	0.01	1	0.0222	0.0222	GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,AC078899.3->chr19:20405898-20414603:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0444	FALSE	0	0	0	1	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NECAB2--PLIN3	2	2	NECAB2	4052	chr16:84012157:+	PLIN3	19033	chr19:4861423:-	ONLY_REF_SPLICE	YES	1	9	0.8	0.31	0.0222	0.0222	NECAB2->N-terminal_EF-hand_calcium_binding_protein_2,chr16:84002237-84036381:+,PLIN3->chr19:4838353-4867780:-,perilipin_3	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.8	0.0444	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NECAB2--PLIN3	2	2	NECAB2	5078	chr16:84014469:+	PLIN3	19033	chr19:4861423:-	ONLY_REF_SPLICE	YES	2	9	0.67	0.31	0.0222	0.0222	NECAB2->N-terminal_EF-hand_calcium_binding_protein_2,chr16:84002237-84036381:+,PLIN3->chr19:4838353-4867780:-,perilipin_3	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.67	0.0444	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLYCD--AP1M2	2	1	MLYCD	3817	chr16:83941887:+	AP1M2	14453	chr19:10694746:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0222	0.0111	MLYCD->chr16:83932731-83949787:+,malonyl-CoA_decarboxylase,AP1M2->adaptor_related_protein_complex_1_mu_2_subunit,chr19:10683347-10697991:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	59	1	0.05	0.0222	0.0111	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0333	TRUE	465	1949	224	605	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	2	1	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	4	10	0.43	0.23	0.0222	0.0111	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.43	0.0333	TRUE	37	101	7	40	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf63--SERPINB6	2	0	C1orf63	8720	chr1:25594231:-	SERPINB6	24334	chr6:2959576:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,SERPINB6->chr6:2948393-2972090:-,serpin_family_B_member_6	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--NR5A1	2	0	CBFA2T3	7645	chr16:88964486:-	NR5A1	26773	chr9:127255428:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,NR5A1->chr9:127243516-127269709:-,nuclear_receptor_subfamily_5_group_A_member_1	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	2	0	CCDC26	1312	chr8:130692174:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	2	0	1	2	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAUS7--BCAP31	2	0	HAUS7	2843	chrX:152735908:-	BCAP31	20198	chrX:152969549:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	HAUS7->HAUS_augmin_like_complex_subunit_7,chrX:152713124-152760978:-,BCAP31->B-cell_receptor-associated_protein_31,chrX:152965947-152990152:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYL1--SLC3A2	2	0	LYL1	1631	chr19:13213345:-	SLC3A2	14973	chr11:62650380:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	LYL1->Oncogene{Bushman},chr19:13209847-13213975:-,lymphoblastic_leukemia_associated_hematopoiesis_regulator_1,SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NTN1--STX8	2	0	NTN1	2850	chr17:8926708:+	STX8	29316	chr17:9281970:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:2=pct:0.6],Esophagus=[count:2=pct:0.5]},GTEx_v2:{count=20;pct=0.23%;dist=Esophagus_-_Muscularis=7,Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Aorta=2,Stomach=1,Breast_-_Mammary_Tissue=1,Uterus=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Brain_-_Cortex=1},LOCAL_INVERSION:+:-:[6471],NTN1->chr17:8924859-9147317:+,netrin_1,STX8->chr17:9153788-9479908:-,syntaxin_8	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	1	4	0	1	1	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAF1--MARCH6	2	0	RAF1	16342	chr3:12629090:-	MARCH6	36338	chr5:10402496:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	RAF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},Raf-1_proto-oncogene,_serine/threonine_kinase,chr3:12625100-12705725:-,MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS25--TPM1	2	0	RPS25	1410	chr11:118888992:-	TPM1	13022	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	GTEx&tcga_normals:1/3694=0.03%,RPS25->chr11:118886422-118889401:-,ribosomal_protein_S25,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SERP1--U2AF1	2	0	SERP1	1285	chr3:150320731:-	U2AF1	25334	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	SERP1->chr3:150259781-150321015:-,stress-associated_endoplasmic_reticulum_protein_1,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SFSWAP--PTTG1IP	2	0	SFSWAP	1367	chr12:132195992:+	PTTG1IP	37183	chr21:46271542:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	SFSWAP->chr12:132195626-132284282:+,splicing_factor,_suppressor_of_white-apricot_homolog,PTTG1IP->Oncogene{Bushman},chr21:46269500-46293752:-,pituitary_tumor-transforming_1_interacting_protein	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STXBP5--PVT1	2	0	STXBP5	4539	chr6:147560406:+	PVT1	60292	chr8:129113226:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM18--BEND3	2	0	TMEM18	1151	chr2:677289:-	BEND3	14017	chr6:107427366:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	TMEM18->chr2:667335-677439:-,transmembrane_protein_18,BEND3->BEN_domain_containing_3,chr6:107386386-107436473:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP32--PEX7	2	0	USP32	3790	chr17:58469243:-	PEX7	50688	chr6:137166753:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,PEX7->chr6:137143717-137235075:+,peroxisomal_biogenesis_factor_7	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF627--ACP5	2	0	ZNF627	4878	chr19:11686168:+	ACP5	16590	chr19:11688494:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	NEIGHBORS_OVERLAP:+:-:[4348],ZNF627->chr19:11670189-11729950:+,zinc_finger_protein_627,ACP5->acid_phosphatase_5,_tartrate_resistant,chr19:11685475-11689823:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKS3--SEPT12	1	1	ANKS3	1223	chr16:4784157:-	SEPT12	25557	chr16:4833558:-	ONLY_REF_SPLICE	YES	7	2	0.22	0.5	0.0111	0.0111	LOCAL_REARRANGEMENT:-:[43291],ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-,SEPT12->chr16:4827670-4838522:-,septin_12	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.5	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-435M10.3--HNRNPUL1	1	1	CTC-435M10.3	1350	chr19:41857107:+	HNRNPUL1	17581	chr19:41774128:+	ONLY_REF_SPLICE	NO	117	346	0.02	0.01	0.0111	0.0111	LOCAL_REARRANGEMENT:+:[43255],CTC-435M10.3->chr19:41856758-41930906:+,HNRNPUL1->chr19:41768401-41813503:+,heterogeneous_nuclear_ribonucleoprotein_U_like_1	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTHFD2--DGUOK	1	1	MTHFD2	4206	chr2:74434953:+	DGUOK	18793	chr2:74173846:+	ONLY_REF_SPLICE	YES	2162	576	0	0	0.0111	0.0111	MTHFD2->chr2:74425689-74444692:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_2,_methenyltetrahydrofolate_cyclohydrolase,DGUOK->chr2:74153953-74186088:+,deoxyguanosine_kinase	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFIX--SLC38A8	1	1	NFIX	9082	chr19:13186485:+	SLC38A8	24354	chr16:84070505:-	ONLY_REF_SPLICE	YES	71	5	0.03	0.29	0.0111	0.0111	NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,SLC38A8->chr16:84043272-84076241:-,solute_carrier_family_38_member_8	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.29	0.0222	TRUE	0	0	0	1	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRG2--FTH1	1	1	PRG2	3081	chr11:57156050:-	FTH1	10002	chr11:61732584:-	ONLY_REF_SPLICE	YES	9404	11162	0	0	0.0111	0.0111	PRG2->chr11:57154267-57158130:-,proteoglycan_2,_bone_marrow_(natural_killer_cell_activator,_eosinophil_granule_major_basic_protein),FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	7	4	0.22	0.33	0.0111	0.0111	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.33	0.0222	FALSE	0	48	1	163	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	1	1	RP11-155G15.2	1071	chr5:96519373:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	NO	2	0	0.5	1	0.0111	0.0111	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0222	FALSE	1	1	0	4	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-348J24.2--RP11-348J24.1	1	1	RP11-348J24.2	1224	chr5:91378637:+	RP11-348J24.1	15596	chr5:91628266:+	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.0111	0.0111	NEIGHBORS_OVERLAP:+:+:[3354],RP11-348J24.2->chr5:91378414-91815133:+,RP11-348J24.1->chr5:91625047-91628401:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SOCS2--CRADD	1	1	SOCS2	6360	chr12:93968949:+	CRADD	24123	chr12:94243746:+	ONLY_REF_SPLICE	YES	411	80	0	0.02	0.0111	0.0111	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[93888],SOCS2->Oncogene{Bushman},chr12:93963590-93977263:+,suppressor_of_cytokine_signaling_2,CRADD->CASP2_and_RIPK1_domain_containing_adaptor_with_death_domain,chr12:94071151-94288616:+	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0222	FALSE	29	2	1	1	0	FALSE	ACH-000487
F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSPAN4--CHID1	1	1	TSPAN4	3911	chr11:847300:+	CHID1	18885	chr11:908645:-	ONLY_REF_SPLICE	YES	490	35	0	0.05	0.0111	0.0111	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[241],TSPAN4->chr11:842808-867116:+,tetraspanin_4,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	F36P_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000487
OVMANA_OVARY	MT-TA--MT-TC	277	58	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	3.425	0.7171	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVMANA_OVARY	1	1	4.1421	FALSE	462	80	0	856	0	FALSE	ACH-000646
OVMANA_OVARY	TRABD--CAPN1	123	8	TRABD	1062	chr22:50624405:+	CAPN1	25503	chr11:64976794:+	ONLY_REF_SPLICE	YES	1	285	0.99	0.31	1.5208	0.0989	TRABD->TraB_domain_containing,chr22:50624344-50638027:+,CAPN1->calpain_1,chr11:64948037-64979477:+	OVMANA_OVARY	0.31	0.99	1.6197	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TN	95	107	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1746	1.323	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVMANA_OVARY	1	1	2.4976	FALSE	369	2501	205	193	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	98	35	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	10	0	0.93	1	1.2117	0.4328	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	0.93	1	1.6445	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	105	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2983	0.0742	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	1	1	1.3725	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TN	53	175	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6553	2.1638	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVMANA_OVARY	1	1	2.8191	FALSE	369	2501	205	193	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TN	89	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1004	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVMANA_OVARY	1	1	1.1004	FALSE	369	2501	205	193	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TC--MT-TY	73	1	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9026	0.0124	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVMANA_OVARY	1	1	0.915	FALSE	51	280	19	36	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TN	59	43	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7295	0.5317	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVMANA_OVARY	1	1	1.2612	FALSE	369	2501	205	193	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TC	48	54	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5935	0.6677	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVMANA_OVARY	1	1	1.2612	FALSE	462	80	0	856	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TC	54	4	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6677	0.0495	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVMANA_OVARY	1	1	0.7172	FALSE	462	80	0	856	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	53	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6553	0.0866	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	1	1	0.7419	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TN	32	79	MT-TA	1054	chrM:5602:-	MT-TN	4092	chrM:5707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3957	0.9768	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVMANA_OVARY	1	1	1.3725	FALSE	369	2501	205	193	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TC	30	67	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3709	0.8284	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVMANA_OVARY	1	1	1.1993	FALSE	462	80	0	856	0	FALSE	ACH-000646
OVMANA_OVARY	RAI1--ZC3H7A	42	16	RAI1	5710	chr17:17627473:+	ZC3H7A	23717	chr16:11876244:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.5193	0.1978	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	OVMANA_OVARY	0.98	1	0.7171	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	TIMM23B--LINC00843	41	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.5069	0.136	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OVMANA_OVARY	0.98	1	0.6429	TRUE	508	994	45	981	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	26	35	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3215	0.4328	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	1	1	0.7543	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	18	60	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	9	0	0.9	1	0.2226	0.7419	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	0.9	1	0.9645	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TY	30	1	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3709	0.0124	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVMANA_OVARY	1	1	0.3833	FALSE	13	214	14	42	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND3--MT-ATP8	29	2	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	1817	1	0.02	0.97	0.3586	0.0247	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVMANA_OVARY	0.02	0.97	0.3833	FALSE	351	233	23	137	0	FALSE	ACH-000646
OVMANA_OVARY	KAT5--RASIP1	26	12	KAT5	5518	chr11:65484278:+	RASIP1	21158	chr19:49225258:-	ONLY_REF_SPLICE	YES	52	0	0.42	1	0.3215	0.1484	{Klijn_CCL:Ovary=1},KAT5->Oncogene{Bushman},chr11:65479467-65487075:+,lysine_acetyltransferase_5,RASIP1->Ras_interacting_protein_1,chr19:49223844-49243978:-	OVMANA_OVARY	0.42	1	0.4699	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	TIMM23--RP11-464F9.1	27	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	159	0	0.15	1	0.3338	0.0124	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OVMANA_OVARY	0.15	1	0.3462	TRUE	519	3926	326	965	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	12	55	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	10	0	0.87	1	0.1484	0.6801	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	0.87	1	0.8285	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TN	25	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3091	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVMANA_OVARY	1	1	0.3091	FALSE	369	2501	205	193	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TC	9	63	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1113	0.779	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVMANA_OVARY	1	1	0.8903	FALSE	462	80	0	856	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TC--MT-TY	8	67	MT-TC	1061	chrM:5766:-	MT-TY	4075	chrM:5883:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0989	0.8284	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVMANA_OVARY	1	1	0.9273	FALSE	51	280	19	36	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TN	5	78	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0618	0.9644	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVMANA_OVARY	1	1	1.0262	FALSE	369	2501	205	193	0	FALSE	ACH-000646
OVMANA_OVARY	TRABD--CAPN1	21	8	TRABD	1087	chr22:50624430:+	CAPN1	25503	chr11:64976794:+	ONLY_REF_SPLICE	YES	2	285	0.94	0.09	0.2597	0.0989	TRABD->TraB_domain_containing,chr22:50624344-50638027:+,CAPN1->calpain_1,chr11:64948037-64979477:+	OVMANA_OVARY	0.09	0.94	0.3586	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	7	60	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	6	0	0.92	1	0.0866	0.7419	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	0.92	1	0.8285	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	7	60	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	9	0	0.88	1	0.0866	0.7419	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	0.88	1	0.8285	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TN	6	63	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0742	0.779	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVMANA_OVARY	1	1	0.8532	FALSE	369	2501	205	193	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TN	21	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2597	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVMANA_OVARY	1	1	0.2597	FALSE	369	2501	205	193	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TN	8	47	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0989	0.5811	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVMANA_OVARY	1	1	0.68	FALSE	369	2501	205	193	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TC	6	54	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0742	0.6677	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVMANA_OVARY	1	1	0.7419	FALSE	462	80	0	856	0	FALSE	ACH-000646
OVMANA_OVARY	ITCH--ASIP	13	25	ITCH	3377	chr20:32981687:+	ASIP	35434	chr20:32848171:+	ONLY_REF_SPLICE	YES	45	0	0.46	1	0.1607	0.3091	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1|LUAD:1|LUSC:1|OV:1],LOCAL_REARRANGEMENT:+:[93891],ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,ASIP->agouti_signaling_protein,chr20:32782375-32857150:+	OVMANA_OVARY	0.46	1	0.4698	TRUE	0	3	0	2	3	TRUE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	19	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2349	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	1	1	0.2349	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TC	3	59	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0.7295	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVMANA_OVARY	1	1	0.7666	FALSE	462	80	0	856	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TC--MT-TY	15	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1855	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVMANA_OVARY	1	1	0.1855	FALSE	51	280	19	36	0	FALSE	ACH-000646
OVMANA_OVARY	ZC3H7A--BCAR4	15	0	ZC3H7A	1144	chr16:11890980:-	BCAR4	32219	chr16:11914154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1855	0	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	OVMANA_OVARY	1	1	0.1855	TRUE	0	12	0	3	12	TRUE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TY	13	5	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1607	0.0618	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVMANA_OVARY	1	1	0.2225	FALSE	13	214	14	42	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	5	35	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	10	0	0.8	1	0.0618	0.4328	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	0.8	1	0.4946	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	3	42	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	9	0	0.83	1	0.0371	0.5193	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	0.83	1	0.5564	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TC--MT-TY	13	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1607	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVMANA_OVARY	1	1	0.1607	FALSE	51	280	19	36	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	3	39	MT-ND6	1391	chrM:14283:-	MT-TE	4567	chrM:14701:-	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.0371	0.4822	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	0.91	1	0.5193	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	4	35	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0495	0.4328	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	0.95	1	0.4823	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND3--MT-ATP8	12	2	MT-ND3	1086	chrM:10144:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	NO	2085	11	0.01	0.56	0.1484	0.0247	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVMANA_OVARY	0.01	0.56	0.1731	FALSE	351	233	23	137	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TC	3	35	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0.4328	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVMANA_OVARY	1	1	0.4699	FALSE	462	80	0	856	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TN	11	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.136	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVMANA_OVARY	1	1	0.136	FALSE	369	2501	205	193	0	FALSE	ACH-000646
OVMANA_OVARY	SMARCA4--CARM1	9	7	SMARCA4	35350	chr19:11145808:+	CARM1	48111	chr19:11015627:+	ONLY_REF_SPLICE	YES	54	18	0.23	0.47	0.1113	0.0866	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[38145],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	OVMANA_OVARY	0.23	0.47	0.1979	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	ZNF14--UCA1	8	10	ZNF14	1142	chr19:19843765:-	UCA1	9362	chr19:15939974:+	INCL_NON_REF_SPLICE	YES	7	15	0.72	0.55	0.0989	0.1236	ZNF14->chr19:19821280-19843906:-,zinc_finger_protein_14,UCA1->chr19:15939771-15947130:+,urothelial_cancer_associated_1_(non-protein_coding)	OVMANA_OVARY	0.55	0.72	0.2225	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	10	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1236	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	1	1	0.1236	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	TMEM260--MLLT10P1	8	6	TMEM260	11571	chr14:57079003:+	MLLT10P1	30931	chr20:29638054:-	INCL_NON_REF_SPLICE	YES	4	0	0.78	1	0.0989	0.0742	TMEM260->chr14:56955072-57117324:+,transmembrane_protein_260,MLLT10P1->chr20:29637799-29638060:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10_pseudogene_1	OVMANA_OVARY	0.78	1	0.1731	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TY	8	4	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0989	0.0495	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVMANA_OVARY	1	1	0.1484	FALSE	13	214	14	42	0	FALSE	ACH-000646
OVMANA_OVARY	DNAJC3--CLDN10	7	6	DNAJC3	1199	chr13:96329591:+	CLDN10	21761	chr13:96212386:+	ONLY_REF_SPLICE	YES	13	105	0.5	0.11	0.0866	0.0742	LOCAL_REARRANGEMENT:+:[97380],DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+,CLDN10->chr13:96085858-96232013:+,claudin_10	OVMANA_OVARY	0.11	0.5	0.1608	TRUE	1	2	0	1	2	TRUE	ACH-000646
OVMANA_OVARY	CTC-432M15.3--CDC42SE2	7	5	CTC-432M15.3	17637	chr5:130825239:-	CDC42SE2	45467	chr5:130694902:+	ONLY_REF_SPLICE	YES	3	22	0.8	0.35	0.0866	0.0618	LOCAL_INVERSION:-:+:[27444],CTC-432M15.3->chr5:130761584-131132676:-,CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+	OVMANA_OVARY	0.35	0.8	0.1484	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	3	20	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0.2473	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	1	1	0.2844	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	8	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0989	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	1	1	0.0989	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TN	8	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0989	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVMANA_OVARY	1	1	0.0989	FALSE	369	2501	205	193	0	FALSE	ACH-000646
OVMANA_OVARY	ZNF101--NACC1	5	12	ZNF101	1171	chr19:19779775:+	NACC1	15042	chr19:13246014:+	ONLY_REF_SPLICE	YES	8	0	0.68	1	0.0618	0.1484	ZNF101->chr19:19779605-19794318:+,zinc_finger_protein_101,NACC1->chr19:13228917-13251955:+,nucleus_accumbens_associated_1	OVMANA_OVARY	0.68	1	0.2102	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	BRE--SNX17	6	7	BRE	9467	chr2:28268666:+	SNX17	24958	chr2:27595490:+	ONLY_REF_SPLICE	YES	50	168	0.21	0.07	0.0742	0.0866	{Klijn_CCL:Ovary=1},BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+,SNX17->chr2:27593389-27599995:+,sorting_nexin_17	OVMANA_OVARY	0.07	0.21	0.1608	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	3	19	MT-ND6	1111	chrM:14563:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0371	0.2349	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	0.96	1	0.272	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	3	19	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0371	0.2349	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	0.96	1	0.272	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	ZC3H7A--BCAR4	6	6	ZC3H7A	2049	chr16:11890075:-	BCAR4	32219	chr16:11914154:-	ONLY_REF_SPLICE	YES	0	4	1	0.75	0.0742	0.0742	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	OVMANA_OVARY	0.75	1	0.1484	TRUE	0	12	0	3	12	TRUE	ACH-000646
OVMANA_OVARY	FOXO1--MRPS31	6	5	FOXO1	2015	chr13:41239720:-	MRPS31	20984	chr13:41303737:-	ONLY_REF_SPLICE	YES	0	72	1	0.13	0.0742	0.0618	LOCAL_REARRANGEMENT:-:[62698],FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,MRPS31->chr13:41303432-41345309:-,mitochondrial_ribosomal_protein_S31	OVMANA_OVARY	0.13	1	0.136	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	MT-ND3--MT-ATP8	6	5	MT-ND3	1290	chrM:10348:+	MT-ATP8	4418	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0742	0.0618	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVMANA_OVARY	0.85	1	0.136	FALSE	351	233	23	137	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	7	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0866	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	1	1	0.0866	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TC--MT-TY	4	12	MT-TC	1065	chrM:5762:-	MT-TY	4101	chrM:5857:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0.1484	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVMANA_OVARY	1	1	0.1979	FALSE	51	280	19	36	0	FALSE	ACH-000646
OVMANA_OVARY	TSPAN14--DYDC2	7	0	TSPAN14	10187	chr10:82269227:+	DYDC2	40494	chr10:82126444:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0866	0	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],LOCAL_REARRANGEMENT:+:[86093],TSPAN14->chr10:82213922-82292879:+,tetraspanin_14,DYDC2->DPY30_domain_containing_2,chr10:82104501-82127829:+	OVMANA_OVARY	1	1	0.0866	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	MT-ND3--MT-ATP8	6	2	MT-ND3	1053	chrM:10111:+	MT-ATP8	4482	chrM:8501:+	INCL_NON_REF_SPLICE	YES	1161	1736	0.01	0	0.0742	0.0247	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVMANA_OVARY	0	0.01	0.0989	FALSE	351	233	23	137	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND3--MT-ATP8	6	1	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	YES	1015	0	0.01	1	0.0742	0.0124	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVMANA_OVARY	0.01	1	0.0866	FALSE	351	233	23	137	0	FALSE	ACH-000646
OVMANA_OVARY	RIMKLB--CLEC6A	6	1	RIMKLB	1219	chr12:8834414:+	CLEC6A	25828	chr12:8618080:+	ONLY_REF_SPLICE	YES	696	0	0.01	1	0.0742	0.0124	RIMKLB->chr12:8834196-8935691:+,ribosomal_modification_protein_rimK-like_family_member_B,CLEC6A->C-type_lectin_domain_family_6_member_A,chr12:8608522-8630926:+	OVMANA_OVARY	0.01	1	0.0866	FALSE	0	0	0	1	0	FALSE	ACH-000646
OVMANA_OVARY	CTD-3116E22.6--ZNF274	6	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0742	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	OVMANA_OVARY	1	1	0.0742	TRUE	0	0	0	13	0	TRUE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TY	5	4	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0618	0.0495	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVMANA_OVARY	1	1	0.1113	FALSE	13	214	14	42	0	FALSE	ACH-000646
OVMANA_OVARY	SYNRG--RP11-1407O15.2	4	8	SYNRG	20601	chr17:35913217:-	RP11-1407O15.2	49147	chr17:36361804:-	ONLY_REF_SPLICE	YES	16	57	0.43	0.17	0.0495	0.0989	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,RP11-1407O15.2->chr17:36337717-36421858:-	OVMANA_OVARY	0.17	0.43	0.1484	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	MT-ND3--MT-ATP8	5	2	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	1830	1	0	0.88	0.0618	0.0247	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVMANA_OVARY	0	0.88	0.0865	FALSE	351	233	23	137	0	FALSE	ACH-000646
OVMANA_OVARY	WWC1--TENM2	5	2	WWC1	7280	chr5:167826572:+	TENM2	74357	chr5:167671425:+	ONLY_REF_SPLICE	YES	106	1	0.06	0.88	0.0618	0.0247	LOCAL_REARRANGEMENT:+:[27494],WWC1->WW_and_C2_domain_containing_1,chr5:167718656-167899308:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	OVMANA_OVARY	0.06	0.88	0.0865	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	ACOX1--PCBP1-AS1	5	1	ACOX1	8304	chr17:73949532:-	PCBP1-AS1	37662	chr2:70278437:-	ONLY_REF_SPLICE	YES	35	26	0.15	0.19	0.0618	0.0124	ACOX1->acyl-CoA_oxidase_1,_palmitoyl,chr17:73937588-73975515:-,PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-	OVMANA_OVARY	0.15	0.19	0.0742	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	TRABD--CAPN1	3	8	TRABD	1062	chr22:50624405:+	CAPN1	25384	chr11:64976675:+	INCL_NON_REF_SPLICE	YES	1	305	0.92	0.03	0.0371	0.0989	TRABD->TraB_domain_containing,chr22:50624344-50638027:+,CAPN1->calpain_1,chr11:64948037-64979477:+	OVMANA_OVARY	0.03	0.92	0.136	TRUE	0	0	0	1	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND3--MT-ATP8	4	3	MT-ND3	1213	chrM:10271:+	MT-ATP8	4379	chrM:8398:+	INCL_NON_REF_SPLICE	YES	2666	0	0	1	0.0495	0.0371	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVMANA_OVARY	0	1	0.0866	FALSE	351	233	23	137	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TC	3	7	MT-TA	1032	chrM:5624:-	MT-TC	4087	chrM:5809:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0.0866	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVMANA_OVARY	1	1	0.1237	FALSE	462	80	0	856	0	FALSE	ACH-000646
OVMANA_OVARY	PTCD3--GTF3C3	4	3	PTCD3	22744	chr2:86365095:+	GTF3C3	46346	chr2:197637877:-	INCL_NON_REF_SPLICE	YES	158	50	0.04	0.12	0.0495	0.0371	PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3,GTF3C3->chr2:197627756-197664449:-,general_transcription_factor_IIIC_subunit_3	OVMANA_OVARY	0.04	0.12	0.0866	TRUE	0	0	0	1	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND3--MT-ATP8	4	2	MT-ND3	1094	chrM:10152:+	MT-ATP8	4474	chrM:8493:+	INCL_NON_REF_SPLICE	YES	2248	1412	0	0	0.0495	0.0247	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVMANA_OVARY	0	0	0.0742	FALSE	351	233	23	137	0	FALSE	ACH-000646
OVMANA_OVARY	PTCD3--GTF3C3	4	2	PTCD3	22463	chr2:86364814:+	GTF3C3	46346	chr2:197637877:-	INCL_NON_REF_SPLICE	YES	213	50	0.03	0.11	0.0495	0.0247	PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3,GTF3C3->chr2:197627756-197664449:-,general_transcription_factor_IIIC_subunit_3	OVMANA_OVARY	0.03	0.11	0.0742	TRUE	0	0	0	1	0	FALSE	ACH-000646
OVMANA_OVARY	SYNRG--RP11-1407O15.2	3	6	SYNRG	20601	chr17:35913217:-	RP11-1407O15.2	50255	chr17:36359042:-	ONLY_REF_SPLICE	YES	16	37	0.36	0.2	0.0371	0.0742	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,RP11-1407O15.2->chr17:36337717-36421858:-	OVMANA_OVARY	0.2	0.36	0.1113	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TY	3	5	MT-TA	1056	chrM:5600:-	MT-TY	4026	chrM:5935:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0.0618	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVMANA_OVARY	1	1	0.0989	FALSE	13	214	14	42	0	FALSE	ACH-000646
OVMANA_OVARY	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0495	0.0124	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVMANA_OVARY	1	1	0.0619	FALSE	515	4851	409	746	0	FALSE	ACH-000646
OVMANA_OVARY	DENND5A--TMEM41B	4	0	DENND5A	1430	chr11:9286508:-	TMEM41B	33953	chr11:9321248:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0495	0	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[15264],DENND5A->DENN_domain_containing_5A,chr11:9160372-9286937:-,TMEM41B->chr11:9302201-9336327:-,transmembrane_protein_41B	OVMANA_OVARY	1	1	0.0495	TRUE	0	1	0	1	1	TRUE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	1	1	0.0495	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	1	1	0.0495	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TY	3	4	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0.0495	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVMANA_OVARY	1	1	0.0866	FALSE	13	214	14	42	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TA--MT-TY	3	4	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0.0495	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVMANA_OVARY	1	1	0.0866	FALSE	13	214	14	42	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TC--MT-TY	4	0	MT-TC	1075	chrM:5752:-	MT-TY	4124	chrM:5834:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVMANA_OVARY	1	1	0.0495	FALSE	51	280	19	36	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TC--MT-TY	4	0	MT-TC	1009	chrM:5818:-	MT-TY	4068	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVMANA_OVARY	1	1	0.0495	FALSE	51	280	19	36	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TW--MT-ND2	4	0	MT-TW	1005	chrM:5516:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OVMANA_OVARY	1	1	0.0495	FALSE	14	0	0	19	0	FALSE	ACH-000646
OVMANA_OVARY	RAI1--ZC3H7A	3	4	RAI1	5710	chr17:17627473:+	ZC3H7A	25681	chr16:11873219:-	ONLY_REF_SPLICE	YES	1	20	0.88	0.26	0.0371	0.0495	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A	OVMANA_OVARY	0.26	0.88	0.0866	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	MT-ND3--MT-ATP8	3	3	MT-ND3	1230	chrM:10288:+	MT-ATP8	4465	chrM:8484:+	INCL_NON_REF_SPLICE	YES	1504	886	0	0.01	0.0371	0.0371	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVMANA_OVARY	0	0.01	0.0742	FALSE	351	233	23	137	0	FALSE	ACH-000646
OVMANA_OVARY	PTCD3--GTF3C3	3	3	PTCD3	22744	chr2:86365095:+	GTF3C3	45773	chr2:197638450:-	INCL_NON_REF_SPLICE	YES	158	46	0.04	0.12	0.0371	0.0371	PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3,GTF3C3->chr2:197627756-197664449:-,general_transcription_factor_IIIC_subunit_3	OVMANA_OVARY	0.04	0.12	0.0742	TRUE	0	0	0	1	0	FALSE	ACH-000646
OVMANA_OVARY	AAK1--PRPSAP1	3	2	AAK1	17292	chr2:69736363:-	PRPSAP1	48127	chr17:74326179:-	ONLY_REF_SPLICE	YES	7	39	0.42	0.11	0.0371	0.0247	AAK1->AP2_associated_kinase_1,chr2:69688532-69901481:-,PRPSAP1->chr17:74305567-74380602:-,phosphoribosyl_pyrophosphate_synthetase-associated_protein_1	OVMANA_OVARY	0.11	0.42	0.0618	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	MT-ND3--MT-ATP8	3	2	MT-ND3	1069	chrM:10127:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1812	11	0	0.31	0.0371	0.0247	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVMANA_OVARY	0	0.31	0.0618	FALSE	351	233	23	137	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND3--MT-ATP8	3	2	MT-ND3	1086	chrM:10144:+	MT-ATP8	4364	chrM:8383:+	INCL_NON_REF_SPLICE	YES	2085	0	0	1	0.0371	0.0247	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVMANA_OVARY	0	1	0.0618	FALSE	351	233	23	137	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND3--MT-ATP8	3	2	MT-ND3	1060	chrM:10118:+	MT-ATP8	4489	chrM:8508:+	INCL_NON_REF_SPLICE	YES	1610	1910	0	0	0.0371	0.0247	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVMANA_OVARY	0	0	0.0618	FALSE	351	233	23	137	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND3--MT-ATP8	3	2	MT-ND3	1053	chrM:10111:+	MT-ATP8	4426	chrM:8445:+	INCL_NON_REF_SPLICE	NO	1161	0	0	1	0.0371	0.0247	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVMANA_OVARY	0	1	0.0618	FALSE	351	233	23	137	0	FALSE	ACH-000646
OVMANA_OVARY	ZC3H7A--BCAR4	2	6	ZC3H7A	2049	chr16:11890075:-	BCAR4	31097	chr16:11915612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0.0742	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	OVMANA_OVARY	1	1	0.0989	TRUE	0	7	0	3	7	TRUE	ACH-000646
OVMANA_OVARY	MT-ND3--MT-ATP8	3	1	MT-ND3	1048	chrM:10106:+	MT-ATP8	4405	chrM:8424:+	INCL_NON_REF_SPLICE	NO	1017	0	0	1	0.0371	0.0124	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVMANA_OVARY	0	1	0.0495	FALSE	351	233	23	137	0	FALSE	ACH-000646
OVMANA_OVARY	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0.0124	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVMANA_OVARY	1	1	0.0495	FALSE	407	2205	196	549	0	FALSE	ACH-000646
OVMANA_OVARY	DMXL2--GNB5	3	0	DMXL2	16226	chr15:51827860:-	GNB5	64217	chr15:52433469:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	HGNC_GENEFAM,DMXL2->Dmx_like_2,chr15:51739908-51915030:-,GNB5->G_protein_subunit_beta_5,chr15:52413117-52483566:-	OVMANA_OVARY	1	1	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1027	chrM:14647:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	1	1	0.0371	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVMANA_OVARY	1	1	0.0371	FALSE	499	1288	110	792	0	FALSE	ACH-000646
OVMANA_OVARY	MT-TC--MT-TY	3	0	MT-TC	1059	chrM:5768:-	MT-TY	4111	chrM:5847:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVMANA_OVARY	1	1	0.0371	FALSE	51	280	19	36	0	FALSE	ACH-000646
OVMANA_OVARY	PTCD3--GTF3C3	3	0	PTCD3	21912	chr2:86364263:+	GTF3C3	46346	chr2:197637877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3,GTF3C3->chr2:197627756-197664449:-,general_transcription_factor_IIIC_subunit_3	OVMANA_OVARY	1	1	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	RELB--HERC1	2	4	RELB	9815	chr19:45532250:+	HERC1	20308	chr15:64067848:-	ONLY_REF_SPLICE	YES	57	1	0.1	0.86	0.0247	0.0495	RELB->Oncogene{Bushman},RELB_proto-oncogene,_NF-kB_subunit,chr19:45504688-45541452:+,HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-	OVMANA_OVARY	0.1	0.86	0.0742	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	KAT5--RASIP1	1	7	KAT5	3915	chr11:65482381:+	RASIP1	21158	chr19:49225258:-	ONLY_REF_SPLICE	YES	76	0	0.1	1	0.0124	0.0866	{Klijn_CCL:Ovary=1},KAT5->Oncogene{Bushman},chr11:65479467-65487075:+,lysine_acetyltransferase_5,RASIP1->Ras_interacting_protein_1,chr19:49223844-49243978:-	OVMANA_OVARY	0.1	1	0.099	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	BRE--SNX17	2	1	BRE	9467	chr2:28268666:+	SNX17	25375	chr2:27595907:+	ONLY_REF_SPLICE	YES	50	194	0.06	0.02	0.0247	0.0124	{Klijn_CCL:Ovary=1},BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+,SNX17->chr2:27593389-27599995:+,sorting_nexin_17	OVMANA_OVARY	0.02	0.06	0.0371	TRUE	0	0	0	1	0	FALSE	ACH-000646
OVMANA_OVARY	CDC42SE2--CTC-432M15.3	2	1	CDC42SE2	6369	chr5:130651837:+	CTC-432M15.3	40169	chr5:130799974:-	ONLY_REF_SPLICE	YES	24	6	0.11	0.33	0.0247	0.0124	LOCAL_INVERSION:+:-:[27444],CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,CTC-432M15.3->chr5:130761584-131132676:-	OVMANA_OVARY	0.11	0.33	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0247	0.0124	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVMANA_OVARY	0.75	1	0.0371	FALSE	467	2173	244	435	0	FALSE	ACH-000646
OVMANA_OVARY	PIGZ--DLG1	2	0	PIGZ	1374	chr3:196695558:-	DLG1	45557	chr3:196778539:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	LOCAL_REARRANGEMENT:-:[73500],PIGZ->chr3:196673214-196695931:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_Z,DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component	OVMANA_OVARY	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	ZC3H7A--BCAR4	2	0	ZC3H7A	1144	chr16:11890980:-	BCAR4	31097	chr16:11915612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	OVMANA_OVARY	1	1	0.0247	TRUE	0	7	0	3	7	TRUE	ACH-000646
OVMANA_OVARY	WWC1--TENM2	1	3	WWC1	10631	chr5:167837000:+	TENM2	46981	chr5:167474432:+	ONLY_REF_SPLICE	YES	107	0	0.04	1	0.0124	0.0371	LOCAL_REARRANGEMENT:+:[27494],WWC1->WW_and_C2_domain_containing_1,chr5:167718656-167899308:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	OVMANA_OVARY	0.04	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	WWC1--TENM2	1	3	WWC1	7280	chr5:167826572:+	TENM2	73154	chr5:167667915:+	ONLY_REF_SPLICE	YES	106	1	0.04	0.8	0.0124	0.0371	LOCAL_REARRANGEMENT:+:[27494],WWC1->WW_and_C2_domain_containing_1,chr5:167718656-167899308:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	OVMANA_OVARY	0.04	0.8	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	AAK1--PRPSAP1	1	1	AAK1	17292	chr2:69736363:-	PRPSAP1	49307	chr17:74324943:-	ONLY_REF_SPLICE	NO	7	52	0.22	0.04	0.0124	0.0124	AAK1->AP2_associated_kinase_1,chr2:69688532-69901481:-,PRPSAP1->chr17:74305567-74380602:-,phosphoribosyl_pyrophosphate_synthetase-associated_protein_1	OVMANA_OVARY	0.04	0.22	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	BRE--SNX17	1	1	BRE	9467	chr2:28268666:+	SNX17	26196	chr2:27596728:+	ONLY_REF_SPLICE	YES	50	176	0.04	0.01	0.0124	0.0124	{Klijn_CCL:Ovary=1},BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+,SNX17->chr2:27593389-27599995:+,sorting_nexin_17	OVMANA_OVARY	0.01	0.04	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000646
OVMANA_OVARY	BRE--SNX17	1	1	BRE	9467	chr2:28268666:+	SNX17	25582	chr2:27596114:+	ONLY_REF_SPLICE	YES	50	175	0.04	0.01	0.0124	0.0124	{Klijn_CCL:Ovary=1},BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+,SNX17->chr2:27593389-27599995:+,sorting_nexin_17	OVMANA_OVARY	0.01	0.04	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000646
OVMANA_OVARY	CD109--MTO1	1	1	CD109	6064	chr6:74446231:+	MTO1	51886	chr6:74192172:+	ONLY_REF_SPLICE	YES	0	30	1	0.06	0.0124	0.0124	GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Skin=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Blood=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=12;pct=0.14%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Whole_Blood=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Testis=1},{Klijn_CCL:Skin=1},CD109->CD109_molecule,Oncogene{Bushman},chr6:74405508-74538040:+,MTO1->chr6:74171301-74218959:+,mitochondrial_tRNA_translation_optimization_1	OVMANA_OVARY	0.06	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	FGD6--USP44	1	1	FGD6	14045	chr12:95507427:-	USP44	38991	chr12:95928102:-	ONLY_REF_SPLICE	YES	11	0	0.15	1	0.0124	0.0124	FGD6->FYVE,_RhoGEF_and_PH_domain_containing_6,chr12:95470525-95611258:-,USP44->chr12:95910336-95945266:-,ubiquitin_specific_peptidase_44	OVMANA_OVARY	0.15	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	NEMF--RP11-58E21.7	1	1	NEMF	2641	chr14:50318281:-	RP11-58E21.7	40017	chr14:50509164:-	ONLY_REF_SPLICE	NO	34	0	0.06	1	0.0124	0.0124	NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,RP11-58E21.7->chr14:50508361-50555893:-	OVMANA_OVARY	0.06	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000646
OVMANA_OVARY	PARD6B--RP4-530I15.6	1	1	PARD6B	2532	chr20:49354616:+	RP4-530I15.6	11954	chr20:49262235:+	ONLY_REF_SPLICE	YES	12	0	0.14	1	0.0124	0.0124	LOCAL_REARRANGEMENT:+:[69269],PARD6B->chr20:49348081-49373332:+,par-6_family_cell_polarity_regulator_beta,RP4-530I15.6->chr20:49262008-49278812:+	OVMANA_OVARY	0.14	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000646
NCIH1703_LUNG	PTMA--PTMS	530	4	PTMA	6054	chr2:232576687:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	2637	786	0.17	0.4	4.9491	0.0374	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	0.17	0.4	4.9865	TRUE	0	0	0	16	0	TRUE	ACH-000747
NCIH1703_LUNG	TIMM23B--LINC00843	103	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9618	0.2521	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1703_LUNG	1	1	1.2139	TRUE	508	994	45	981	0	FALSE	ACH-000747
NCIH1703_LUNG	PTMA--PTMS	101	1	PTMA	6024	chr2:232576657:+	PTMS	13753	chr12:6879118:+	INCL_NON_REF_SPLICE	YES	2458	767	0.04	0.12	0.9431	0.0093	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	0.04	0.12	0.9524	TRUE	0	0	0	16	0	FALSE	ACH-000747
NCIH1703_LUNG	PTMA--PTMS	70	1	PTMA	6054	chr2:232576687:+	PTMS	13973	chr12:6879338:+	INCL_NON_REF_SPLICE	YES	2637	908	0.03	0.07	0.6537	0.0093	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	0.03	0.07	0.663	TRUE	0	0	0	16	0	FALSE	ACH-000747
NCIH1703_LUNG	TIMM23--RP11-464F9.1	64	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	323	5	0.18	0.93	0.5976	0.0467	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1703_LUNG	0.18	0.93	0.6443	TRUE	519	3926	326	965	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	3	214	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	304	1	0.42	1	0.028	1.9983	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	0.42	1	2.0263	FALSE	344	827	44	306	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	3	209	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	9	1	0.96	1	0.028	1.9516	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	0.96	1	1.9796	FALSE	344	826	44	306	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	3	207	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	5	1	0.98	1	0.028	1.933	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	0.98	1	1.961	FALSE	344	826	44	306	0	FALSE	ACH-000747
NCIH1703_LUNG	KRIT1--COG5	44	22	KRIT1	9665	chr7:91863763:-	COG5	36057	chr7:106938791:-	ONLY_REF_SPLICE	YES	55	58	0.55	0.53	0.4109	0.2054	KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-,COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5	NCIH1703_LUNG	0.53	0.55	0.6163	TRUE	0	0	0	1	0	TRUE	ACH-000747
NCIH1703_LUNG	ZNF654--HMGB2	43	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4015	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1703_LUNG	1	1	0.4015	TRUE	0	0	0	518	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	5	148	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	1	0.99	0.99	0.0467	1.382	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	0.99	0.99	1.4287	FALSE	344	821	44	306	0	FALSE	ACH-000747
NCIH1703_LUNG	RP11-123O10.4--GRIP1	38	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3548	0.0654	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1703_LUNG	1	1	0.4202	FALSE	416	2512	207	587	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	5	128	MT-ND4	1170	chrM:10929:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	9	0	0.94	1	0.0467	1.1953	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	0.94	1	1.242	FALSE	344	826	44	306	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND6--MT-TE	32	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2988	0.028	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1703_LUNG	1	1	0.3268	FALSE	499	1288	110	792	0	FALSE	ACH-000747
NCIH1703_LUNG	C15orf57--CBX3	26	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	42	77	0.48	0.34	0.2428	0.1214	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1703_LUNG	0.34	0.48	0.3642	TRUE	267	562	48	632	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	12	60	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8387	0	0.01	1	0.1121	0.5603	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	0.01	1	0.6724	FALSE	328	800	43	304	0	FALSE	ACH-000747
NCIH1703_LUNG	HSP90AB1--MT-RNR2	21	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3999	0	0.01	1	0.1961	0.0187	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1703_LUNG	0.01	1	0.2148	FALSE	13	9	0	364	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-TA--MT-TC	19	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1774	0.0187	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1703_LUNG	1	1	0.1961	FALSE	462	80	0	856	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	9	38	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	5330	0	0.01	1	0.084	0.3548	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	0.01	1	0.4388	FALSE	344	827	44	306	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	4	58	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	11	0	0.85	1	0.0374	0.5416	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	0.85	1	0.579	FALSE	344	826	44	306	0	FALSE	ACH-000747
NCIH1703_LUNG	C15orf57--CBX3	15	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	42	78	0.36	0.24	0.1401	0.084	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1703_LUNG	0.24	0.36	0.2241	TRUE	267	562	48	632	0	FALSE	ACH-000747
NCIH1703_LUNG	HSP90AB1--MT-RNR2	16	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4020	0	0	1	0.1494	0.0187	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1703_LUNG	0	1	0.1681	FALSE	13	9	0	364	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	11	17	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	25	0	0.53	1	0.1027	0.1587	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	0.53	1	0.2614	FALSE	344	827	44	306	0	FALSE	ACH-000747
NCIH1703_LUNG	MIPEPP3--ABHD12	15	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1401	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	NCIH1703_LUNG	1	1	0.1401	TRUE	64	202	9	44	0	FALSE	ACH-000747
NCIH1703_LUNG	NPM1P24--SET	15	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1401	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1703_LUNG	1	1	0.1401	TRUE	0	0	0	434	0	FALSE	ACH-000747
NCIH1703_LUNG	PTMA--PTMS	14	4	PTMA	6053	chr2:232576686:+	PTMS	13737	chr12:6879102:+	INCL_NON_REF_SPLICE	YES	2623	691	0.01	0.03	0.1307	0.0374	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	0.01	0.03	0.1681	TRUE	0	0	0	16	0	FALSE	ACH-000747
NCIH1703_LUNG	RP4-565E6.1--HYDIN	14	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1307	0.0093	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1703_LUNG	1	1	0.14	TRUE	456	1387	91	133	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND6--MT-TE	10	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0934	0.1494	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1703_LUNG	0.96	1	0.2428	FALSE	499	1288	110	792	0	FALSE	ACH-000747
NCIH1703_LUNG	RP11-680G10.1--GSE1	13	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	45	1	0.27	0.1214	0.0374	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1703_LUNG	0.27	1	0.1588	TRUE	458	1351	185	561	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	6	28	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.056	0.2615	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	0.94	1	0.3175	FALSE	344	821	44	306	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	3	36	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9	0	0.81	1	0.028	0.3362	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	0.81	1	0.3642	FALSE	344	826	44	306	0	FALSE	ACH-000747
NCIH1703_LUNG	LINC01036--LINC01037	11	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1027	0.0093	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	NCIH1703_LUNG	1	1	0.112	FALSE	0	24	0	62	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND6--MT-TE	3	33	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.3082	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1703_LUNG	1	1	0.3362	FALSE	499	1288	110	792	0	FALSE	ACH-000747
NCIH1703_LUNG	PTMA--PTMS	10	4	PTMA	6054	chr2:232576687:+	PTMS	13958	chr12:6879323:+	INCL_NON_REF_SPLICE	YES	2637	1109	0.01	0.01	0.0934	0.0374	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	0.01	0.01	0.1308	TRUE	0	0	0	16	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND6--MT-TE	6	16	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0.1494	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1703_LUNG	1	1	0.2054	FALSE	499	1288	110	792	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	9	3	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.084	0.028	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	0.86	1	0.112	FALSE	344	821	44	306	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	4	22	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	4	0	0.87	1	0.0374	0.2054	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	0.87	1	0.2428	FALSE	344	826	44	306	0	FALSE	ACH-000747
NCIH1703_LUNG	KRIT1--COG5	6	12	KRIT1	9306	chr7:91864122:-	COG5	36057	chr7:106938791:-	ONLY_REF_SPLICE	YES	50	58	0.26	0.24	0.056	0.1121	KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-,COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5	NCIH1703_LUNG	0.24	0.26	0.1681	TRUE	0	0	0	1	0	TRUE	ACH-000747
NCIH1703_LUNG	MT-ND6--MT-TE	8	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0.028	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1703_LUNG	1	1	0.1027	FALSE	499	1288	110	792	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	4	17	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	11	0	0.66	1	0.0374	0.1587	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	0.66	1	0.1961	FALSE	344	826	44	306	0	FALSE	ACH-000747
NCIH1703_LUNG	PTMA--PTMS	8	0	PTMA	6054	chr2:232576687:+	PTMS	13976	chr12:6879341:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	1	1	0.0747	TRUE	0	0	0	16	0	TRUE	ACH-000747
NCIH1703_LUNG	RP11-96H19.1--RP11-446N19.1	7	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0654	0.0093	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1703_LUNG	0.89	1	0.0747	FALSE	407	2205	196	549	0	FALSE	ACH-000747
NCIH1703_LUNG	RP11-96H19.1--RP11-446N19.1	7	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0654	0.0093	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1703_LUNG	0.89	1	0.0747	FALSE	515	4851	409	746	0	FALSE	ACH-000747
NCIH1703_LUNG	SMARCA1--APLN	7	1	SMARCA1	23977	chrX:128582310:-	APLN	30201	chrX:128782769:-	INCL_NON_REF_SPLICE	YES	105	0	0.07	1	0.0654	0.0093	SMARCA1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_1,chrX:128580480-128657477:-,APLN->apelin,chrX:128779240-128788933:-	NCIH1703_LUNG	0.07	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000747
NCIH1703_LUNG	USP46--DCUN1D4	7	1	USP46	15881	chr4:53463707:-	DCUN1D4	30838	chr4:52729603:+	INCL_NON_REF_SPLICE	YES	34	190	0.19	0.04	0.0654	0.0093	USP46->chr4:53457138-53525502:-,ubiquitin_specific_peptidase_46,DCUN1D4->chr4:52709166-52783003:+,defective_in_cullin_neddylation_1_domain_containing_4	NCIH1703_LUNG	0.04	0.19	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000747
NCIH1703_LUNG	PTMA--PTMS	6	4	PTMA	6054	chr2:232576687:+	PTMS	13795	chr12:6879160:+	INCL_NON_REF_SPLICE	NO	2637	1131	0	0.01	0.056	0.0374	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	0	0.01	0.0934	FALSE	0	0	0	16	0	FALSE	ACH-000747
NCIH1703_LUNG	PTMA--PTMS	6	4	PTMA	6060	chr2:232576693:+	PTMS	13753	chr12:6879118:+	INCL_NON_REF_SPLICE	YES	2892	767	0	0.01	0.056	0.0374	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	0	0.01	0.0934	FALSE	0	0	0	16	0	FALSE	ACH-000747
NCIH1703_LUNG	PTMA--PTMS	6	4	PTMA	6054	chr2:232576687:+	PTMS	13774	chr12:6879139:+	INCL_NON_REF_SPLICE	YES	2637	968	0	0.01	0.056	0.0374	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	0	0.01	0.0934	FALSE	0	0	0	16	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	6	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.89	0.056	0.0187	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	0.89	1	0.0747	FALSE	344	821	44	306	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND6--MT-TE	4	9	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0.084	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1703_LUNG	1	1	0.1214	FALSE	499	1288	110	792	0	FALSE	ACH-000747
NCIH1703_LUNG	AC002066.1--CAV1	6	0	AC002066.1	1112	chr7:116139408:-	CAV1	14768	chr7:116199000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.056	0	LOCAL_INVERSION:-:+:[25320],AC002066.1->chr7:115878314-116139519:-,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	NCIH1703_LUNG	1	1	0.056	TRUE	0	0	1	6	0	TRUE	ACH-000747
NCIH1703_LUNG	PRR16--CTD-2334D19.1	6	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.056	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH1703_LUNG	1	1	0.056	FALSE	56	216	12	147	0	FALSE	ACH-000747
NCIH1703_LUNG	PTMA--PTMS	5	4	PTMA	6530	chr2:232577163:+	PTMS	13740	chr12:6879105:+	INCL_NON_REF_SPLICE	NO	2429	711	0	0.01	0.0467	0.0374	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	0	0.01	0.0841	FALSE	0	0	0	16	0	FALSE	ACH-000747
NCIH1703_LUNG	PTMA--PTMS	5	4	PTMA	6060	chr2:232576693:+	PTMS	13958	chr12:6879323:+	ONLY_REF_SPLICE	YES	2892	1109	0	0.01	0.0467	0.0374	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	0	0.01	0.0841	FALSE	0	0	0	16	0	FALSE	ACH-000747
NCIH1703_LUNG	PTMA--PTMS	5	4	PTMA	6054	chr2:232576687:+	PTMS	13425	chr12:6878790:+	INCL_NON_REF_SPLICE	NO	2637	369	0	0.02	0.0467	0.0374	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	0	0.02	0.0841	FALSE	0	0	0	16	0	FALSE	ACH-000747
NCIH1703_LUNG	RP11-120D5.1--MID1	6	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.056	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1703_LUNG	1	1	0.056	FALSE	16	356	14	466	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-TA--MT-TC	5	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0467	0.028	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1703_LUNG	1	1	0.0747	FALSE	462	80	0	856	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ATP6--MT-CO1	5	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	8894	13625	0	0	0.0467	0.0093	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1703_LUNG	0	0	0.056	FALSE	183	104	9	328	0	FALSE	ACH-000747
NCIH1703_LUNG	PTMS--MT-ATP8	5	1	PTMS	4858	chr12:6879841:+	MT-ATP8	8173	chrM:8405:+	INCL_NON_REF_SPLICE	YES	1586	0	0	1	0.0467	0.0093	PTMS->chr12:6874682-6880116:+,parathymosin,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1703_LUNG	0	1	0.056	FALSE	1	0	0	1	0	FALSE	ACH-000747
NCIH1703_LUNG	RP11-680G10.1--GSE1	5	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	90	1	0.06	0.0467	0.0093	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1703_LUNG	0.06	1	0.056	TRUE	465	1949	224	605	0	FALSE	ACH-000747
NCIH1703_LUNG	NPM1P24--SET	5	0	NPM1P24	1378	chr10:74677915:-	SET	12314	chr9:131456209:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0467	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1703_LUNG	1	1	0.0467	TRUE	0	0	0	434	0	FALSE	ACH-000747
NCIH1703_LUNG	WTAPP1--RUVBL1	5	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0467	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	NCIH1703_LUNG	1	1	0.0467	TRUE	9	252	6	66	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND1--MT-RNR2	4	2	MT-ND1	1207	chrM:3513:+	MT-RNR2	5683	chrM:2397:+	INCL_NON_REF_SPLICE	NO	4	6859	0.6	0	0.0374	0.0187	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1703_LUNG	0	0.6	0.0561	FALSE	120	26	5	87	0	FALSE	ACH-000747
NCIH1703_LUNG	AC002066.1--AC073130.1	3	5	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	3	0	0.73	1	0.028	0.0467	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	NCIH1703_LUNG	0.73	1	0.0747	FALSE	0	1	1	30	0	FALSE	ACH-000747
NCIH1703_LUNG	KRIT1--COG5	2	9	KRIT1	8711	chr7:91864717:-	COG5	36057	chr7:106938791:-	ONLY_REF_SPLICE	YES	69	58	0.14	0.16	0.0187	0.084	KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-,COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5	NCIH1703_LUNG	0.14	0.16	0.1027	TRUE	0	0	0	1	0	TRUE	ACH-000747
NCIH1703_LUNG	MT-ATP6--MT-CO1	4	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	10540	12503	0	0	0.0374	0.0093	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1703_LUNG	0	0	0.0467	FALSE	183	104	9	328	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ATP6--MT-CO1	4	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8953	13879	0	0	0.0374	0.0093	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1703_LUNG	0	0	0.0467	FALSE	183	104	9	328	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ATP6--MT-CO1	3	5	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3035	14088	0	0	0.028	0.0467	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1703_LUNG	0	0	0.0747	FALSE	183	104	9	328	0	FALSE	ACH-000747
NCIH1703_LUNG	PTMA--PTMS	3	5	PTMA	6551	chr2:232577184:+	PTMS	13746	chr12:6879111:+	INCL_NON_REF_SPLICE	NO	2195	746	0	0.01	0.028	0.0467	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	0	0.01	0.0747	FALSE	0	0	0	16	0	FALSE	ACH-000747
NCIH1703_LUNG	PTMA--PTMS	3	5	PTMA	6054	chr2:232576687:+	PTMS	11843	chr12:6875906:+	INCL_NON_REF_SPLICE	NO	2637	179	0	0.04	0.028	0.0467	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	0	0.04	0.0747	FALSE	0	0	0	1	0	FALSE	ACH-000747
NCIH1703_LUNG	ERBB2IP--SREK1	4	0	ERBB2IP	1332	chr5:65222634:+	SREK1	41566	chr5:65449291:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	NEIGHBORS[57422],ERBB2IP->chr5:65222303-65378377:+,SREK1->chr5:65435799-65479443:+,splicing_regulatory_glutamic_acid/lysine-rich_protein_1	NCIH1703_LUNG	1	1	0.0374	FALSE	0	2	0	3	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ATP6--MT-CO1	3	4	MT-ATP6	1295	chrM:8821:+	MT-CO1	5307	chrM:6529:+	INCL_NON_REF_SPLICE	NO	14451	12470	0	0	0.028	0.0374	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1703_LUNG	0	0	0.0654	FALSE	183	104	9	328	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ATP8--MT-ND2	4	0	MT-ATP8	1095	chrM:8460:+	MT-ND2	4888	chrM:5150:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0	LOCAL_REARRANGEMENT:+:[2855],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1703_LUNG	1	1	0.0374	FALSE	26	2	1	4	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	1	1	0.0374	FALSE	344	821	44	306	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1703_LUNG	1	1	0.0374	FALSE	499	1288	110	792	0	FALSE	ACH-000747
NCIH1703_LUNG	ZNF654--HMGB2	4	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1703_LUNG	1	1	0.0374	TRUE	0	0	0	518	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	3	3	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.028	0.028	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	0.75	1	0.056	FALSE	344	821	44	306	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1530	chrM:9056:+	MT-CO1	5890	chrM:7112:+	INCL_NON_REF_SPLICE	YES	4435	12874	0	0	0.028	0.0187	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1703_LUNG	0	0	0.0467	FALSE	183	104	9	328	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1185	chrM:8711:+	MT-CO1	4986	chrM:6208:+	INCL_NON_REF_SPLICE	NO	11523	12373	0	0	0.028	0.0187	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1703_LUNG	0	0	0.0467	FALSE	183	104	9	328	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND1--MT-RNR2	3	2	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	5	5327	0.5	0	0.028	0.0187	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1703_LUNG	0	0.5	0.0467	FALSE	120	26	5	87	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND1--MT-RNR2	3	2	MT-ND1	1291	chrM:3597:+	MT-RNR2	4993	chrM:1707:+	INCL_NON_REF_SPLICE	YES	6	0	0.45	1	0.028	0.0187	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1703_LUNG	0.45	1	0.0467	FALSE	114	26	4	85	0	FALSE	ACH-000747
NCIH1703_LUNG	SLC1A5--MT-ND4L	3	2	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	350	0	0.01	1	0.028	0.0187	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	0.01	1	0.0467	FALSE	0	0	0	189	0	FALSE	ACH-000747
NCIH1703_LUNG	AC002066.1--AC073130.1	2	5	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	5	0	0.58	1	0.0187	0.0467	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	NCIH1703_LUNG	0.58	1	0.0654	FALSE	0	3	0	33	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	10627	0	0	1	0.028	0.0093	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1703_LUNG	0	1	0.0373	FALSE	182	97	9	327	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1555	chrM:9081:+	MT-CO1	5956	chrM:7178:+	INCL_NON_REF_SPLICE	YES	3035	9642	0	0	0.028	0.0093	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1703_LUNG	0	0	0.0373	FALSE	183	104	9	328	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8687	13858	0	0	0.028	0.0093	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1703_LUNG	0	0	0.0373	FALSE	183	104	9	328	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5226	chrM:6448:+	INCL_NON_REF_SPLICE	YES	8878	12598	0	0	0.028	0.0093	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1703_LUNG	0	0	0.0373	FALSE	183	104	9	328	0	FALSE	ACH-000747
NCIH1703_LUNG	PTMS--MT-ATP8	3	1	PTMS	4902	chr12:6879885:+	MT-ATP8	8236	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1256	4	0	0.5	0.028	0.0093	PTMS->chr12:6874682-6880116:+,parathymosin,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1703_LUNG	0	0.5	0.0373	FALSE	1	0	0	1	0	FALSE	ACH-000747
NCIH1703_LUNG	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0.0093	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1703_LUNG	1	1	0.0373	FALSE	467	2173	244	435	0	FALSE	ACH-000747
NCIH1703_LUNG	TIMM23B--LINC00843	3	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.028	0.0093	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1703_LUNG	0.8	1	0.0373	TRUE	62	24	1	171	0	FALSE	ACH-000747
NCIH1703_LUNG	EMC2--EIF3E	3	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	NCIH1703_LUNG	1	1	0.028	TRUE	0	0	0	12	0	TRUE	ACH-000747
NCIH1703_LUNG	LINC01036--LINC01037	3	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	NCIH1703_LUNG	1	1	0.028	FALSE	0	26	0	50	0	FALSE	ACH-000747
NCIH1703_LUNG	MFSD1--IQCJ	3	0	MFSD1	20003	chr3:158545126:+	IQCJ	27229	chr3:158963632:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	GTEx_FI:{Heart=[count:15=pct:6.0],Brain=[count:3=pct:0.5],Esophagus=[count:2=pct:0.5],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6]},MFSD1->chr3:158449987-158547508:+,major_facilitator_superfamily_domain_containing_1,IQCJ->IQ_motif_containing_J,chr3:158680717-158984096:+	NCIH1703_LUNG	1	1	0.028	TRUE	20	2	0	1	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1007	chrM:10766:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1703_LUNG	1	1	0.028	FALSE	344	821	44	306	0	FALSE	ACH-000747
NCIH1703_LUNG	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1703_LUNG	1	1	0.028	FALSE	462	80	0	856	0	FALSE	ACH-000747
NCIH1703_LUNG	C17orf76-AS1--ANXA2	2	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	NCIH1703_LUNG	1	1	0.0187	TRUE	0	0	0	10	0	TRUE	ACH-000747
NCIH1703_LUNG	HDLBP--THAP4	2	0	HDLBP	2464	chr2:242254985:-	THAP4	44071	chr2:242545888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein,THAP4->THAP_domain_containing_4,chr2:242523820-242576864:-	NCIH1703_LUNG	1	1	0.0187	TRUE	0	2	0	4	1	TRUE	ACH-000747
NCIH1703_LUNG	NBN--CALB1	2	0	NBN	2566	chr8:90996753:-	CALB1	31320	chr8:91081465:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	LOCAL_REARRANGEMENT:-:[55380],NBN->Oncogene{Bushman},chr8:90945564-91015456:-,nibrin,CALB1->calbindin_1,chr8:91070836-91107703:-	NCIH1703_LUNG	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000747
NCIH1703_LUNG	PTMA--PTMS	2	0	PTMA	6593	chr2:232577226:+	PTMS	14193	chr12:6879558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH1703_LUNG	1	1	0.0187	TRUE	0	0	0	16	0	TRUE	ACH-000747
NCIH1703_LUNG	RP11-130F10.1--RP11-389E17.1	2	0	RP11-130F10.1	1465	chr4:178366597:+	RP11-389E17.1	12423	chr4:178653521:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	NEIGHBORS[51631],RP11-130F10.1->chr4:178366133-178598280:+,RP11-389E17.1->chr4:178649911-178911904:+	NCIH1703_LUNG	1	1	0.0187	FALSE	0	1	0	1	0	FALSE	ACH-000747
NCIH1703_LUNG	RP11-130F10.1--RP11-389E17.1	2	0	RP11-130F10.1	4727	chr4:178517685:+	RP11-389E17.1	12423	chr4:178653521:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	NEIGHBORS[51631],RP11-130F10.1->chr4:178366133-178598280:+,RP11-389E17.1->chr4:178649911-178911904:+	NCIH1703_LUNG	1	1	0.0187	FALSE	0	1	0	1	0	FALSE	ACH-000747
NCIH1703_LUNG	RP4-565E6.1--HYDIN	2	0	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1703_LUNG	1	1	0.0187	TRUE	84	87	4	41	0	FALSE	ACH-000747
NCIH1703_LUNG	SNHG16--TAF9	2	0	SNHG16	1092	chr17:74553939:+	TAF9	17471	chr5:68651780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,TAF9->TATA-box_binding_protein_associated_factor_9,chr5:68646811-68665840:-	NCIH1703_LUNG	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000747
NCIH1703_LUNG	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0093	0.028	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1703_LUNG	1	1	0.0373	FALSE	93	270	15	244	0	FALSE	ACH-000747
NCIH1703_LUNG	ARMC2--RCC1	1	1	ARMC2	6120	chr6:109197553:+	RCC1	27040	chr1:28834640:+	ONLY_REF_SPLICE	YES	7	3	0.22	0.4	0.0093	0.0093	ARMC2->armadillo_repeat_containing_2,chr6:109169619-109295186:+,RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1	NCIH1703_LUNG	0.22	0.4	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000747
NCIH1703_LUNG	FAM172A--NR2F1-AS1	1	1	FAM172A	12880	chr5:93111865:-	NR2F1-AS1	39228	chr5:92747215:-	ONLY_REF_SPLICE	YES	25	83	0.07	0.02	0.0093	0.0093	NEIGHBORS[32421],FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-	NCIH1703_LUNG	0.02	0.07	0.0186	FALSE	3	3	0	3	0	FALSE	ACH-000747
NCIH1703_LUNG	HSD17B11--HNRNPD	1	1	HSD17B11	9065	chr4:88278431:-	HNRNPD	18561	chr4:83280792:-	ONLY_REF_SPLICE	YES	126	297	0.02	0.01	0.0093	0.0093	HSD17B11->chr4:88257762-88312538:-,hydroxysteroid_(17-beta)_dehydrogenase_11,HNRNPD->Oncogene{Bushman},chr4:83273651-83295656:-,heterogeneous_nuclear_ribonucleoprotein_D	NCIH1703_LUNG	0.01	0.02	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000747
NCIH1703_LUNG	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0093	0.0093	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1703_LUNG	1	1	0.0186	FALSE	192	492	57	212	0	FALSE	ACH-000747
EFE184_ENDOMETRIUM	NPRL3--LUC7L	351	205	NPRL3	6237	chr16:169125:-	LUC7L	35927	chr16:239338:-	ONLY_REF_SPLICE	YES	67	73	0.89	0.88	3.7708	2.2023	LOCAL_REARRANGEMENT:-:[50109],NPRL3->NPR3_like,_GATOR1_complex_subunit,chr16:134273-188859:-,LUC7L->LUC7_like,chr16:238968-279462:-	EFE184_ENDOMETRIUM	0.88	0.89	5.9731	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	NME6--FBLN2	255	171	NME6	5207	chr3:48338217:-	FBLN2	30726	chr3:13672829:+	ONLY_REF_SPLICE	YES	128	706	0.77	0.38	2.7395	1.837	NME6->NME/NM23_nucleoside_diphosphate_kinase_6,chr3:48334754-48343175:-,FBLN2->chr3:13573824-13679922:+,fibulin_2	EFE184_ENDOMETRIUM	0.38	0.77	4.5765	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TC	145	24	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5577	0.2578	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFE184_ENDOMETRIUM	1	1	1.8155	FALSE	462	80	0	856	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TN	134	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4396	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFE184_ENDOMETRIUM	1	1	1.4396	FALSE	369	2501	205	193	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MAP4--UBE2D2	80	48	MAP4	5952	chr3:48019355:-	UBE2D2	43200	chr5:138979957:+	ONLY_REF_SPLICE	YES	175	61	0.42	0.68	0.8594	0.5157	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	EFE184_ENDOMETRIUM	0.42	0.68	1.3751	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TN	42	83	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4512	0.8917	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFE184_ENDOMETRIUM	1	1	1.3429	FALSE	369	2501	205	193	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	RAP1GDS1--RP11-724M22.1	52	36	RAP1GDS1	1186	chr4:99182720:+	RP11-724M22.1	26064	chr4:99417676:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.5586	0.3867	NEIGHBORS[52503],RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+,RP11-724M22.1->chr4:99417515-99431086:+	EFE184_ENDOMETRIUM	1	1	0.9453	FALSE	0	0	0	1	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	EXD3--PNPLA7	48	48	EXD3	2255	chr9:140289755:-	PNPLA7	51547	chr9:140387534:-	ONLY_REF_SPLICE	YES	42	2	0.7	0.98	0.5157	0.5157	GTEx_FI:{Adrenal_Gland=[count:1=pct:1.2],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Subcutaneous=1,Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:-:[36690],EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,PNPLA7->chr9:140354404-140444986:-,patatin_like_phospholipase_domain_containing_7	EFE184_ENDOMETRIUM	0.7	0.98	1.0314	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	MT-ND6--MT-TE	57	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6123	0.0322	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFE184_ENDOMETRIUM	1	1	0.6445	FALSE	499	1288	110	792	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	SMARCA4--CARM1	47	28	SMARCA4	1253	chr19:11071850:+	CARM1	49237	chr19:11018715:+	ONLY_REF_SPLICE	YES	8	45	0.9	0.62	0.5049	0.3008	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[38145],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	EFE184_ENDOMETRIUM	0.62	0.9	0.8057	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	TIMM23B--LINC00843	42	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4512	0.1719	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EFE184_ENDOMETRIUM	1	1	0.6231	TRUE	508	994	45	981	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TC	35	23	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.376	0.2471	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFE184_ENDOMETRIUM	1	1	0.6231	FALSE	462	80	0	856	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	TCF7L1--ELMOD3	33	27	TCF7L1	2041	chr2:85361573:+	ELMOD3	34338	chr2:85616874:+	ONLY_REF_SPLICE	YES	1	5	0.98	0.92	0.3545	0.2901	NEIGHBORS[44006],TCF7L1->chr2:85360533-85537511:+,transcription_factor_7_like_1,ELMOD3->ELMO_domain_containing_3,chr2:85581517-85618875:+	EFE184_ENDOMETRIUM	0.92	0.98	0.6446	FALSE	0	0	0	1	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-ND6--MT-TE	32	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.3438	0.1289	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFE184_ENDOMETRIUM	0.92	1	0.4727	FALSE	499	1288	110	792	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MAP4--UBE2D2	23	30	MAP4	3829	chr3:48040128:-	UBE2D2	43200	chr5:138979957:+	ONLY_REF_SPLICE	YES	163	61	0.25	0.46	0.2471	0.3223	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	EFE184_ENDOMETRIUM	0.25	0.46	0.5694	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	TIMM23--RP11-464F9.1	30	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3223	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EFE184_ENDOMETRIUM	1	1	0.3223	TRUE	519	3926	326	965	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TC	29	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3115	0.0215	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFE184_ENDOMETRIUM	1	1	0.333	FALSE	462	80	0	856	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TN	15	49	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1611	0.5264	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFE184_ENDOMETRIUM	1	1	0.6875	FALSE	369	2501	205	193	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TN	10	67	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1074	0.7198	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFE184_ENDOMETRIUM	1	1	0.8272	FALSE	369	2501	205	193	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TN	20	25	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2149	0.2686	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFE184_ENDOMETRIUM	1	1	0.4835	FALSE	369	2501	205	193	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-ND6--MT-TE	25	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2686	0.0215	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFE184_ENDOMETRIUM	1	1	0.2901	FALSE	499	1288	110	792	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	NME6--FBLN2	2	90	NME6	3507	chr3:48339917:-	FBLN2	30726	chr3:13672829:+	ONLY_REF_SPLICE	YES	220	706	0.29	0.12	0.0215	0.9669	NME6->NME/NM23_nucleoside_diphosphate_kinase_6,chr3:48334754-48343175:-,FBLN2->chr3:13573824-13679922:+,fibulin_2	EFE184_ENDOMETRIUM	0.12	0.29	0.9884	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	KMT2A--UBE4A	22	7	KMT2A	12578	chr11:118347697:+	UBE4A	53577	chr11:118235755:+	ONLY_REF_SPLICE	YES	13	0	0.69	1	0.2363	0.0752	LOCAL_REARRANGEMENT:+:[37279],KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,UBE4A->chr11:118230300-118269926:+,ubiquitination_factor_E4A	EFE184_ENDOMETRIUM	0.69	1	0.3115	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	PDK1--RP11-187C18.5	19	18	PDK1	10395	chr2:173435552:+	RP11-187C18.5	33733	chr9:45394296:-	ONLY_REF_SPLICE	YES	17	0	0.69	1	0.2041	0.1934	PDK1->ArcherDX_panel,FoundationOne_panel,chr2:173420101-173489823:+,pyruvate_dehydrogenase_kinase_1,RP11-187C18.5->chr9:45393845-45415976:-	EFE184_ENDOMETRIUM	0.69	1	0.3975	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	RP11-47I22.3--PRKCH	19	8	RP11-47I22.3	1221	chr14:62037478:+	PRKCH	24773	chr14:61857943:+	ONLY_REF_SPLICE	YES	10	7	0.73	0.79	0.2041	0.0859	YOSHIHARA_TCGA_num_samples[BRCA:2|KIRC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[19564],RP11-47I22.3->chr14:62037258-62125414:+,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	EFE184_ENDOMETRIUM	0.73	0.79	0.29	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TN	13	28	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1397	0.3008	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFE184_ENDOMETRIUM	1	1	0.4405	FALSE	369	2501	205	193	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-ND6--MT-TE	13	15	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1397	0.1611	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFE184_ENDOMETRIUM	1	1	0.3008	FALSE	499	1288	110	792	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	NPRL3--LUC7L	2	59	NPRL3	2781	chr16:180521:-	LUC7L	35927	chr16:239338:-	ONLY_REF_SPLICE	NO	84	73	0.42	0.46	0.0215	0.6338	LOCAL_REARRANGEMENT:-:[50109],NPRL3->NPR3_like,_GATOR1_complex_subunit,chr16:134273-188859:-,LUC7L->LUC7_like,chr16:238968-279462:-	EFE184_ENDOMETRIUM	0.42	0.46	0.6553	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	RAP1GDS1--RP11-724M22.1	15	5	RAP1GDS1	1186	chr4:99182720:+	RP11-724M22.1	27237	chr4:99421329:+	ONLY_REF_SPLICE	YES	0	14	1	0.59	0.1611	0.0537	NEIGHBORS[52503],RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+,RP11-724M22.1->chr4:99417515-99431086:+	EFE184_ENDOMETRIUM	0.59	1	0.2148	FALSE	0	0	0	1	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	RP11-123O10.4--GRIP1	15	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1611	0.043	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	EFE184_ENDOMETRIUM	1	1	0.2041	FALSE	416	2512	207	587	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TN	15	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1611	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFE184_ENDOMETRIUM	1	1	0.1611	FALSE	369	2501	205	193	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-ND6--MT-TE	9	20	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.0967	0.2149	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFE184_ENDOMETRIUM	0.88	1	0.3116	FALSE	499	1288	110	792	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TC	7	27	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0752	0.2901	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFE184_ENDOMETRIUM	1	1	0.3653	FALSE	462	80	0	856	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TN	3	43	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0322	0.4619	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFE184_ENDOMETRIUM	1	1	0.4941	FALSE	369	2501	205	193	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	TRAP1--CREBBP	11	10	TRAP1	8641	chr16:3729720:-	CREBBP	30545	chr16:3860780:-	ONLY_REF_SPLICE	YES	379	41	0.05	0.34	0.1182	0.1074	LOCAL_REARRANGEMENT:-:[7457],TRAP1->Oncogene{Bushman},TNF_receptor_associated_protein_1,chr16:3701640-3767598:-,CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-	EFE184_ENDOMETRIUM	0.05	0.34	0.2256	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	WDHD1--DLGAP5	10	9	WDHD1	1395	chr14:55493429:-	DLGAP5	31762	chr14:55655898:-	ONLY_REF_SPLICE	YES	16	109	0.54	0.15	0.1074	0.0967	WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-,DLGAP5->chr14:55614830-55658396:-,discs_large_homolog_associated_protein_5	EFE184_ENDOMETRIUM	0.15	0.54	0.2041	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TN	12	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1289	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFE184_ENDOMETRIUM	1	1	0.1289	FALSE	369	2501	205	193	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	NME6--FBLN2	1	43	NME6	5207	chr3:48338217:-	FBLN2	31855	chr3:13677945:+	ONLY_REF_SPLICE	YES	128	685	0.26	0.06	0.0107	0.4619	NME6->NME/NM23_nucleoside_diphosphate_kinase_6,chr3:48334754-48343175:-,FBLN2->chr3:13573824-13679922:+,fibulin_2	EFE184_ENDOMETRIUM	0.06	0.26	0.4726	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	ORAI2--RP11-514P8.2	11	0	ORAI2	1556	chr7:102074108:+	RP11-514P8.2	19345	chr7:102070581:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1182	0	NEIGHBORS_OVERLAP:+:-:[1674],ORAI2->ORAI_calcium_release-activated_calcium_modulator_2,Oncogene{Bushman},chr7:102073553-102097268:+,RP11-514P8.2->chr7:102067265-102075227:-	EFE184_ENDOMETRIUM	1	1	0.1182	FALSE	0	0	0	1	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	PLEKHA4--TULP2	10	4	PLEKHA4	6428	chr19:49362726:-	TULP2	26599	chr19:49391518:-	ONLY_REF_SPLICE	YES	3	0	0.82	1	0.1074	0.043	LOCAL_REARRANGEMENT:-:[12333],PLEKHA4->chr19:49340354-49371889:-,pleckstrin_homology_domain_containing_A4,TULP2->chr19:49384222-49401990:-,tubby_like_protein_2	EFE184_ENDOMETRIUM	0.82	1	0.1504	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	9	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.83	1	0.0967	0.0645	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EFE184_ENDOMETRIUM	0.83	1	0.1612	FALSE	515	4851	409	746	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MICALL1--FBLN2	8	5	MICALL1	14531	chr22:38329119:+	FBLN2	27056	chr3:13611815:+	ONLY_REF_SPLICE	YES	101	2	0.11	0.87	0.0859	0.0537	MICALL1->MICAL_like_1,chr22:38301664-38338829:+,FBLN2->chr3:13573824-13679922:+,fibulin_2	EFE184_ENDOMETRIUM	0.11	0.87	0.1396	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	MT-ND6--MT-TE	6	13	MT-ND6	1049	chrM:14625:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0645	0.1397	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFE184_ENDOMETRIUM	1	1	0.2042	FALSE	499	1288	110	792	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	TRAP1--CREBBP	7	9	TRAP1	7569	chr16:3735997:-	CREBBP	30545	chr16:3860780:-	ONLY_REF_SPLICE	YES	517	41	0.03	0.28	0.0752	0.0967	LOCAL_REARRANGEMENT:-:[7457],TRAP1->Oncogene{Bushman},TNF_receptor_associated_protein_1,chr16:3701640-3767598:-,CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-	EFE184_ENDOMETRIUM	0.03	0.28	0.1719	TRUE	0	0	0	1	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-ND6--MT-TE	4	20	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	8	0	0.75	1	0.043	0.2149	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFE184_ENDOMETRIUM	0.75	1	0.2579	FALSE	499	1288	110	792	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TC	3	23	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0322	0.2471	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFE184_ENDOMETRIUM	1	1	0.2793	FALSE	462	80	0	856	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	PCNXL3--XRRA1	6	10	PCNXL3	6194	chr11:65388437:+	XRRA1	39772	chr11:74563127:-	ONLY_REF_SPLICE	YES	69	5	0.19	0.76	0.0645	0.1074	PCNXL3->chr11:65383244-65404910:+,XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-	EFE184_ENDOMETRIUM	0.19	0.76	0.1719	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TC	3	21	MT-TA	1063	chrM:5593:-	MT-TC	4102	chrM:5794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0322	0.2256	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFE184_ENDOMETRIUM	1	1	0.2578	FALSE	462	80	0	856	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	PCNXL3--XRRA1	5	13	PCNXL3	6194	chr11:65388437:+	XRRA1	37605	chr11:74574066:-	ONLY_REF_SPLICE	YES	69	5	0.21	0.78	0.0537	0.1397	PCNXL3->chr11:65383244-65404910:+,XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-	EFE184_ENDOMETRIUM	0.21	0.78	0.1934	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	C15orf57--CBX3	6	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	18	28	0.44	0.33	0.0645	0.0859	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EFE184_ENDOMETRIUM	0.33	0.44	0.1504	TRUE	267	562	48	632	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TN	8	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0859	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFE184_ENDOMETRIUM	1	1	0.0859	FALSE	369	2501	205	193	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	TCF7L1--ELMOD3	5	12	TCF7L1	2041	chr2:85361573:+	ELMOD3	34725	chr2:85617261:+	ONLY_REF_SPLICE	YES	1	7	0.94	0.71	0.0537	0.1289	NEIGHBORS[44006],TCF7L1->chr2:85360533-85537511:+,transcription_factor_7_like_1,ELMOD3->ELMO_domain_containing_3,chr2:85581517-85618875:+	EFE184_ENDOMETRIUM	0.71	0.94	0.1826	FALSE	0	0	0	1	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MAP4--UBE2D2	2	23	MAP4	5952	chr3:48019355:-	UBE2D2	44264	chr5:138994171:+	ONLY_REF_SPLICE	YES	175	254	0.12	0.09	0.0215	0.2471	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	EFE184_ENDOMETRIUM	0.09	0.12	0.2686	TRUE	0	0	0	1	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	TCF7L1--ELMOD3	1	27	TCF7L1	2041	chr2:85361573:+	ELMOD3	33007	chr2:85614221:+	ONLY_REF_SPLICE	NO	1	4	0.97	0.88	0.0107	0.2901	NEIGHBORS[44006],TCF7L1->chr2:85360533-85537511:+,transcription_factor_7_like_1,ELMOD3->ELMO_domain_containing_3,chr2:85581517-85618875:+	EFE184_ENDOMETRIUM	0.88	0.97	0.3008	FALSE	0	0	0	1	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	SH2B3--ACAD10	6	5	SH2B3	7983	chr12:111886174:+	ACAD10	32863	chr12:112182447:+	INCL_NON_REF_SPLICE	YES	17	36	0.39	0.23	0.0645	0.0537	SH2B3->SH2B_adaptor_protein_3,chr12:111843752-111889427:+,ACAD10->acyl-CoA_dehydrogenase_family_member_10,chr12:112123857-112194903:+	EFE184_ENDOMETRIUM	0.23	0.39	0.1182	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	SMG6--MST1	7	1	SMG6	22781	chr17:2075952:-	MST1	42845	chr3:49724235:-	ONLY_REF_SPLICE	YES	23	8	0.26	0.5	0.0752	0.0107	SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-,MST1->Oncogene{Bushman},chr3:49721380-49726934:-,macrophage_stimulating_1	EFE184_ENDOMETRIUM	0.26	0.5	0.0859	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	5	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0537	0.0859	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EFE184_ENDOMETRIUM	0.93	1	0.1396	FALSE	467	2173	244	435	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-ND6--MT-TE	3	15	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	9	0	0.67	1	0.0322	0.1611	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFE184_ENDOMETRIUM	0.67	1	0.1933	FALSE	499	1288	110	792	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-ND6--MT-TE	5	7	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0.0752	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFE184_ENDOMETRIUM	1	1	0.1289	FALSE	499	1288	110	792	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	NPRL3--LUC7L	1	23	NPRL3	1711	chr16:188149:-	LUC7L	35927	chr16:239338:-	ONLY_REF_SPLICE	NO	77	73	0.24	0.25	0.0107	0.2471	LOCAL_REARRANGEMENT:-:[50109],NPRL3->NPR3_like,_GATOR1_complex_subunit,chr16:134273-188859:-,LUC7L->LUC7_like,chr16:238968-279462:-	EFE184_ENDOMETRIUM	0.24	0.25	0.2578	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	ZC3H3--RP11-661A12.12	6	1	ZC3H3	4593	chr8:144618427:-	RP11-661A12.12	17721	chr8:144715688:-	INCL_NON_REF_SPLICE	YES	23	0	0.23	1	0.0645	0.0107	LOCAL_REARRANGEMENT:-:[90618],ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,RP11-661A12.12->chr8:144714241-144715926:-	EFE184_ENDOMETRIUM	0.23	1	0.0752	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TC	3	12	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0322	0.1289	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFE184_ENDOMETRIUM	1	1	0.1611	FALSE	462	80	0	856	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	YBX3--MT-CO3	6	0	YBX3	1219	chr12:10875693:-	MT-CO3	20797	chrM:9412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0645	0	YBX3->Y-box_binding_protein_3,chr12:10851683-10875911:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	EFE184_ENDOMETRIUM	1	1	0.0645	FALSE	25	0	0	6	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	C15orf57--CBX3	4	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	18	28	0.38	0.28	0.043	0.0752	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EFE184_ENDOMETRIUM	0.28	0.38	0.1182	TRUE	267	562	48	632	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	GCKR--SNX17	5	2	GCKR	6411	chr2:27726486:+	SNX17	22128	chr2:27597928:+	ONLY_REF_SPLICE	YES	0	307	1	0.02	0.0537	0.0215	GCKR->chr2:27719709-27746554:+,glucokinase_(hexokinase_4)_regulator,SNX17->chr2:27593389-27599995:+,sorting_nexin_17	EFE184_ENDOMETRIUM	0.02	1	0.0752	TRUE	0	0	0	1	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-ND6--MT-TE	3	10	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0322	0.1074	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFE184_ENDOMETRIUM	1	1	0.1396	FALSE	499	1288	110	792	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	VGLL4--COL4A1	5	2	VGLL4	4478	chr3:11744445:-	COL4A1	48526	chr13:110838900:-	ONLY_REF_SPLICE	YES	19	98	0.27	0.07	0.0537	0.0215	VGLL4->chr3:11597544-11762220:-,vestigial_like_family_member_4,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	EFE184_ENDOMETRIUM	0.07	0.27	0.0752	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	BRK1--FANCD2	4	4	BRK1	2311	chr3:10167392:+	FANCD2	45256	chr3:10138010:+	ONLY_REF_SPLICE	YES	1109	51	0.01	0.14	0.043	0.043	LOCAL_REARRANGEMENT:+:[13662],BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+,FANCD2->ArcherDX_panel,Fanconi_anemia_complementation_group_D2,FoundationOne_panel,Oncogene{Bushman},chr3:10068098-10143614:+	EFE184_ENDOMETRIUM	0.01	0.14	0.086	FALSE	0	0	0	1	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFE184_ENDOMETRIUM	1	1	0.0537	FALSE	499	1288	110	792	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-ND6--MT-TE	3	8	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0322	0.0859	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFE184_ENDOMETRIUM	1	1	0.1181	FALSE	499	1288	110	792	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TN	5	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFE184_ENDOMETRIUM	1	1	0.0537	FALSE	369	2501	205	193	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	SLC41A3--MTND2P28	5	0	SLC41A3	19445	chr3:125731493:-	MTND2P28	25510	chr1:565029:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0	SLC41A3->chr3:125725198-125820404:-,solute_carrier_family_41_member_3,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	EFE184_ENDOMETRIUM	1	1	0.0537	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	GNB2L1--MT-CO3	4	1	GNB2L1	4969	chr5:180669214:-	MT-CO3	13345	chrM:9277:+	INCL_NON_REF_SPLICE	YES	4306	0	0	1	0.043	0.0107	GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	EFE184_ENDOMETRIUM	0	1	0.0537	FALSE	0	0	0	4	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFE184_ENDOMETRIUM	1	1	0.043	FALSE	499	1288	110	792	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-ND6--MT-TE	3	4	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0322	0.043	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFE184_ENDOMETRIUM	1	1	0.0752	FALSE	499	1288	110	792	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFE184_ENDOMETRIUM	1	1	0.043	FALSE	369	2501	205	193	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	TEAD3--FKBP5	3	2	TEAD3	9857	chr6:35442790:-	FKBP5	22230	chr6:35565181:-	INCL_NON_REF_SPLICE	YES	26	39	0.16	0.11	0.0322	0.0215	LOCAL_REARRANGEMENT:-:[76509],TEAD3->TEA_domain_transcription_factor_3,chr6:35441374-35464853:-,FKBP5->FK506_binding_protein_5,chr6:35541362-35696360:-	EFE184_ENDOMETRIUM	0.11	0.16	0.0537	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	TSPAN9--TULP3	2	6	TSPAN9	4878	chr12:3315584:+	TULP3	23522	chr12:3031428:+	ONLY_REF_SPLICE	YES	12	41	0.4	0.16	0.0215	0.0645	TSPAN9->chr12:3186521-3395730:+,tetraspanin_9,TULP3->chr12:2986389-3050306:+,tubby_like_protein_3	EFE184_ENDOMETRIUM	0.16	0.4	0.086	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	WDHD1--DLGAP5	3	2	WDHD1	1395	chr14:55493429:-	DLGAP5	33001	chr14:55650471:-	ONLY_REF_SPLICE	YES	16	144	0.24	0.03	0.0322	0.0215	WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-,DLGAP5->chr14:55614830-55658396:-,discs_large_homolog_associated_protein_5	EFE184_ENDOMETRIUM	0.03	0.24	0.0537	TRUE	0	0	0	1	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	ORAI2--RP11-514P8.2	3	0	ORAI2	1556	chr7:102074108:+	RP11-514P8.2	20494	chr7:102067589:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0322	0	NEIGHBORS_OVERLAP:+:-:[1674],ORAI2->ORAI_calcium_release-activated_calcium_modulator_2,Oncogene{Bushman},chr7:102073553-102097268:+,RP11-514P8.2->chr7:102067265-102075227:-	EFE184_ENDOMETRIUM	1	1	0.0322	FALSE	0	0	0	1	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	BRK1--FANCD2	1	7	BRK1	2311	chr3:10167392:+	FANCD2	44181	chr3:10136884:+	ONLY_REF_SPLICE	YES	1109	34	0.01	0.19	0.0107	0.0752	LOCAL_REARRANGEMENT:+:[13662],BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+,FANCD2->ArcherDX_panel,Fanconi_anemia_complementation_group_D2,FoundationOne_panel,Oncogene{Bushman},chr3:10068098-10143614:+	EFE184_ENDOMETRIUM	0.01	0.19	0.0859	FALSE	0	0	0	1	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0107	0.0645	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EFE184_ENDOMETRIUM	0.7	1	0.0752	FALSE	407	2205	196	549	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	SRCIN1--METTL16	2	2	SRCIN1	15418	chr17:36708683:-	METTL16	42056	chr17:2344853:-	ONLY_REF_SPLICE	YES	6	15	0.4	0.21	0.0215	0.0215	SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-,METTL16->chr17:2308856-2415185:-,methyltransferase_like_16	EFE184_ENDOMETRIUM	0.21	0.4	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	TEAD3--FKBP5	2	2	TEAD3	9534	chr6:35443113:-	FKBP5	22230	chr6:35565181:-	ONLY_REF_SPLICE	YES	34	39	0.11	0.09	0.0215	0.0215	LOCAL_REARRANGEMENT:-:[76509],TEAD3->TEA_domain_transcription_factor_3,chr6:35441374-35464853:-,FKBP5->FK506_binding_protein_5,chr6:35541362-35696360:-	EFE184_ENDOMETRIUM	0.09	0.11	0.043	TRUE	0	0	0	1	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	BRK1--FANCD2	1	4	BRK1	1228	chr3:10157503:+	FANCD2	44181	chr3:10136884:+	ONLY_REF_SPLICE	YES	914	34	0.01	0.13	0.0107	0.043	LOCAL_REARRANGEMENT:+:[13662],BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+,FANCD2->ArcherDX_panel,Fanconi_anemia_complementation_group_D2,FoundationOne_panel,Oncogene{Bushman},chr3:10068098-10143614:+	EFE184_ENDOMETRIUM	0.01	0.13	0.0537	FALSE	0	0	0	1	0	FALSE	ACH-000435
EFE184_ENDOMETRIUM	HIF1A--PRKCH	2	0	HIF1A	1327	chr14:62162557:+	PRKCH	48659	chr14:61952220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	EFE184_ENDOMETRIUM	1	1	0.0215	TRUE	1	15	1	9	1	TRUE	ACH-000435
EFE184_ENDOMETRIUM	LA16c-313D11.12--LTBP3	2	0	LA16c-313D11.12	1650	chr16:739650:+	LTBP3	21738	chr11:65308764:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	LA16c-313D11.12->chr16:739001-742554:+,LTBP3->Oncogene{Bushman},chr11:65306276-65326401:-,latent_transforming_growth_factor_beta_binding_protein_3	EFE184_ENDOMETRIUM	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	NPC1--OSBPL1A	2	0	NPC1	1612	chr18:21166251:-	OSBPL1A	59770	chr18:21819346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-,OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A	EFE184_ENDOMETRIUM	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	PCNXL3--XRRA1	2	0	PCNXL3	4295	chr11:65386538:+	XRRA1	37605	chr11:74574066:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	PCNXL3->chr11:65383244-65404910:+,XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-	EFE184_ENDOMETRIUM	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	SLC12A6--AQR	2	0	SLC12A6	3870	chr15:34610762:-	AQR	36083	chr15:35236629:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	SLC12A6->chr15:34525460-34630261:-,solute_carrier_family_12_member_6,AQR->aquarius_intron-binding_spliceosomal_factor,chr15:35147732-35262040:-	EFE184_ENDOMETRIUM	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	TBC1D5--UST	2	0	TBC1D5	22918	chr3:17549966:-	UST	58672	chr6:149285546:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-,UST->chr6:149068464-149398126:+,uronyl_2-sulfotransferase	EFE184_ENDOMETRIUM	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	WBSCR16--GTF2IRD2	2	0	WBSCR16	7358	chr7:74477020:-	GTF2IRD2	20739	chr7:74251505:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	WBSCR16->Williams-Beuren_syndrome_chromosome_region_16,chr7:74441226-74490064:-,GTF2IRD2->GTF2I_repeat_domain_containing_2,chr7:74210483-74267847:-	EFE184_ENDOMETRIUM	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	WBSCR27--XPO5	2	0	WBSCR27	3505	chr7:73254361:-	XPO5	20043	chr6:43526328:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	WBSCR27->Williams_Beuren_syndrome_chromosome_region_27,chr7:73248920-73256865:-,XPO5->chr6:43490072-43543812:-,exportin_5	EFE184_ENDOMETRIUM	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000435
EFE184_ENDOMETRIUM	ZC3H3--TSTA3	1	2	ZC3H3	4593	chr8:144618427:-	TSTA3	18808	chr8:144698893:-	ONLY_REF_SPLICE	YES	23	16	0.12	0.16	0.0107	0.0215	LOCAL_REARRANGEMENT:-:[71165],ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,TSTA3->chr8:144694788-144700218:-,tissue_specific_transplantation_antigen_P35B	EFE184_ENDOMETRIUM	0.12	0.16	0.0322	TRUE	0	0	0	1	0	TRUE	ACH-000435
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV8-2--TRAJ8	126	21	TRAV8-2	1680	chr14:22315398:+	TRAJ8	4693	chr14:23005099:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6292	0.2715	HGNC_GENEFAM,TRAV8-2->T_cell_receptor_alpha_variable_8-2,chr14:22314719-22315403:+,TRAJ8->T_cell_receptor_alpha_joining_8,chr14:23005092-23005151:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.9007	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	121	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5646	0.362	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.9266	TRUE	508	994	45	981	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	66	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	107	2	0.39	0.97	0.8534	0.0388	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.97	0.8922	TRUE	519	3926	326	965	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPTLC1--NOL8	49	7	SPTLC1	6553	chr9:94842298:-	NOL8	25194	chr9:95084028:-	ONLY_REF_SPLICE	YES	38	63	0.6	0.47	0.6336	0.0905	SPTLC1->chr9:94794281-94877666:-,serine_palmitoyltransferase_long_chain_base_subunit_1,NOL8->chr9:95059640-95087918:-,nucleolar_protein_8	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.6	0.7241	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KATNA1--RP11-162J8.3	47	12	KATNA1	1504	chr6:149969605:-	RP11-162J8.3	16184	chr6:149348916:-	ONLY_REF_SPLICE	YES	12	0	0.83	1	0.6077	0.1552	KATNA1->chr6:149916009-149970108:-,katanin_catalytic_subunit_A1,RP11-162J8.3->chr6:149348836-149353709:-	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.7629	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	48	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6207	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6207	TRUE	0	0	0	518	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	45	8	TRAV2	1521	chr14:22181064:+	TRAJ4	4523	chr14:23011141:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5819	0.1034	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6853	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	31	8	TRAV2	1526	chr14:22181069:+	TRAJ4	4524	chr14:23011142:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4008	0.1034	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5042	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	32	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4138	0.0129	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4267	FALSE	499	1288	110	792	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV8-1--TRAC	26	5	TRAV8-1	1420	chr14:22265878:+	TRAC	4601	chr14:23016447:+	INCL_NON_REF_SPLICE	YES	17	0	0.65	1	0.3362	0.0647	GTEx_FI:{Whole_Blood=[count:3=pct:2.3]},HGNC_GENEFAM,TRAV8-1->T_cell_receptor_alpha_variable_8-1,chr14:22265459-22266058:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	0.4009	TRUE	3	7	0	1	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV6--TRAJ5	17	11	TRAV6	1588	chr14:22237316:+	TRAJ5	4594	chr14:23009191:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2198	0.1422	HGNC_GENEFAM,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.362	TRUE	1	1	0	1	1	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV6--TRAJ5	16	8	TRAV6	1583	chr14:22237311:+	TRAJ5	4599	chr14:23009196:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2069	0.1034	HGNC_GENEFAM,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3103	TRUE	1	1	0	1	1	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	17	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2198	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2198	FALSE	292	1546	117	613	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV10--TRAJ6	17	0	TRAV10	1601	chr14:22294236:+	TRAJ6	4643	chr14:23008054:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2198	0	HGNC_GENEFAM,TRAV10->T_cell_receptor_alpha_variable_10,chr14:22293636-22294239:+,TRAJ6->T_cell_receptor_alpha_joining_6,chr14:23008016-23008077:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2198	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	12	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.1552	0.1552	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.3104	FALSE	499	1288	110	792	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV6--TRAJ5	12	11	TRAV6	1585	chr14:22237313:+	TRAJ5	4597	chr14:23009194:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1552	0.1422	HGNC_GENEFAM,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2974	TRUE	1	1	0	1	1	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV10--TRAJ6	12	7	TRAV10	1597	chr14:22294232:+	TRAJ6	4606	chr14:23008017:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1552	0.0905	HGNC_GENEFAM,TRAV10->T_cell_receptor_alpha_variable_10,chr14:22293636-22294239:+,TRAJ6->T_cell_receptor_alpha_joining_6,chr14:23008016-23008077:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2457	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1422	0.0129	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1551	FALSE	499	1288	110	792	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPTLC1--NOL8	7	10	SPTLC1	7135	chr9:94841716:-	NOL8	25194	chr9:95084028:-	ONLY_REF_SPLICE	YES	39	63	0.3	0.21	0.0905	0.1293	SPTLC1->chr9:94794281-94877666:-,serine_palmitoyltransferase_long_chain_base_subunit_1,NOL8->chr9:95059640-95087918:-,nucleolar_protein_8	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.3	0.2198	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV6--TRAJ5	7	8	TRAV6	1583	chr14:22237311:+	TRAJ5	4600	chr14:23009197:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0905	0.1034	HGNC_GENEFAM,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1939	TRUE	1	1	0	1	1	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	8	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	21	21	0.32	0.32	0.1034	0.0259	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.32	0.1293	TRUE	267	562	48	632	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	6	8	TRAV2	1522	chr14:22181065:+	TRAJ4	4530	chr14:23011148:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0776	0.1034	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.181	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	15	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.83	1	0.0517	0.194	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.2457	FALSE	499	1288	110	792	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV3--TRAJ5	5	9	TRAV3	1605	chr14:22192564:+	TRAJ5	4613	chr14:23009193:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0647	0.1164	HGNC_GENEFAM,TRAV3->T_cell_receptor_alpha_variable_3_(gene/pseudogene),chr14:22191960-22192568:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1811	TRUE	1	2	0	2	2	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	12	MT-ND6	1333	chrM:14341:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0517	0.1552	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.2069	FALSE	499	1288	110	792	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	15	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.0388	0.194	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.2328	FALSE	499	1288	110	792	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	5	7	TRAV2	1514	chr14:22181057:+	TRAJ4	4522	chr14:23011140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0647	0.0905	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1552	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	12	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0388	0.1552	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.194	FALSE	499	1288	110	792	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	4	8	TRAV2	1521	chr14:22181064:+	TRAJ4	4517	chr14:23011135:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0.1034	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1551	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV6--TRAJ5	4	8	TRAV6	1576	chr14:22237304:+	TRAJ5	4600	chr14:23009197:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0.1034	HGNC_GENEFAM,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1551	TRUE	1	1	0	1	1	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV6--TRAJ5	3	11	TRAV6	1587	chr14:22237315:+	TRAJ5	4593	chr14:23009190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.1422	HGNC_GENEFAM,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.181	TRUE	1	1	0	1	1	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV6--TRAJ5	3	11	TRAV6	1590	chr14:22237318:+	TRAJ5	4591	chr14:23009188:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.1422	HGNC_GENEFAM,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+,TRAJ5->T_cell_receptor_alpha_joining_5,chr14:23009190-23009249:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.181	TRUE	1	1	0	1	1	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAC	5	2	TRAV2	1074	chr14:22180617:+	TRAC	4524	chr14:23016447:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0647	0.0259	GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0906	TRUE	3	16	0	1	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	5	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1305	0	0	1	0.0647	0.0129	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0776	FALSE	13	9	0	364	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-662B19.2--WDR37	5	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0647	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0647	TRUE	31	42	1	25	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV10--TRAJ6	3	8	TRAV10	1601	chr14:22294236:+	TRAJ6	4604	chr14:23008015:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.1034	HGNC_GENEFAM,TRAV10->T_cell_receptor_alpha_variable_10,chr14:22293636-22294239:+,TRAJ6->T_cell_receptor_alpha_joining_6,chr14:23008016-23008077:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1422	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	3	8	TRAV2	1525	chr14:22181068:+	TRAJ4	4524	chr14:23011142:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.1034	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1422	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	3	8	TRAV2	1523	chr14:22181066:+	TRAJ4	4528	chr14:23011146:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.1034	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1422	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	3	8	TRAV2	1519	chr14:22181062:+	TRAJ4	4521	chr14:23011139:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.1034	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1422	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	3	8	TRAV2	1523	chr14:22181066:+	TRAJ4	4521	chr14:23011139:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.1034	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1422	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	3	7	TRAV2	1515	chr14:22181058:+	TRAJ4	4526	chr14:23011144:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.0905	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1293	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	18	21	0.25	0.22	0.0517	0.0259	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.25	0.0776	TRUE	267	562	48	632	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEPT9--PTMA	4	2	SEPT9	42892	chr17:75496331:+	PTMA	47870	chr2:232573235:+	INCL_NON_REF_SPLICE	YES	405	5	0.01	0.55	0.0517	0.0259	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.55	0.0776	FALSE	0	0	0	2	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0.0129	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	FALSE	515	4851	409	746	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	3	2	TRAV2	1284	chr14:22180827:+	TRAJ4	4526	chr14:23011144:+	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.0388	0.0259	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.0647	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ4	3	2	TRAV2	1283	chr14:22180826:+	TRAJ4	4526	chr14:23011144:+	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.0388	0.0259	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ4->T_cell_receptor_alpha_joining_4,chr14:23011142-23011204:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.0647	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1313	0	0	1	0.0388	0.0129	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0517	FALSE	13	9	0	364	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXO1--LINC00598	3	0	FOXO1	2015	chr13:41239720:-	LINC00598	16798	chr13:41034543:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	NEIGHBORS[74661],FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,LINC00598->chr13:41025131-41055143:-,long_intergenic_non-protein_coding_RNA_598	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0388	FALSE	8	15	1	11	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXO1--LINC00598	3	0	FOXO1	2015	chr13:41239720:-	LINC00598	13384	chr13:41048232:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	NEIGHBORS[74661],FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,LINC00598->chr13:41025131-41055143:-,long_intergenic_non-protein_coding_RNA_598	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0388	FALSE	0	0	1	4	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0388	FALSE	499	1288	110	792	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0388	FALSE	499	1288	110	792	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0388	FALSE	499	1288	110	792	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0388	TRUE	22	156	2	142	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ6	3	0	TRAV2	1269	chr14:22180812:+	TRAJ6	4521	chr14:23008013:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ6->T_cell_receptor_alpha_joining_6,chr14:23008016-23008077:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ6	3	0	TRAV2	1279	chr14:22180822:+	TRAJ6	4529	chr14:23008021:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ6->T_cell_receptor_alpha_joining_6,chr14:23008016-23008077:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWOX--RP11-571O6.1	3	0	WWOX	10605	chr16:78198186:+	RP11-571O6.1	34002	chr16:77632982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-571O6.1->chr16:77624703-77644578:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR2--DHX34	2	1	GLTSCR2	1262	chr19:48249040:+	DHX34	29491	chr19:47885237:+	ONLY_REF_SPLICE	YES	1439	16	0	0.16	0.0259	0.0129	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:2=pct:3.8],Breast=[count:2=pct:1.8],Cervix_Uteri=[count:1=pct:12.5],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=4;pct=0.05%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hippocampus=1,Whole_Blood=1,Spleen=1},GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.16	0.0388	FALSE	14	43	2	13	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	54	0	0.05	1	0.0259	0.0129	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0388	FALSE	164	806	69	479	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV8-1--TRAJ6	2	1	TRAV8-1	1600	chr14:22266058:+	TRAJ6	4601	chr14:23008016:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0.0129	GTEx_FI:{Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},HGNC_GENEFAM,TRAV8-1->T_cell_receptor_alpha_variable_8-1,chr14:22265459-22266058:+,TRAJ6->T_cell_receptor_alpha_joining_6,chr14:23008016-23008077:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0388	TRUE	1	2	0	1	2	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BANP--SLC7A5	2	0	BANP	3272	chr16:87985121:+	SLC7A5	39052	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	{Klijn_CCL:Skin=1},LOCAL_INVERSION:+:-:[79756],BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0259	TRUE	0	0	0	2	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	2	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0259	FALSE	1	11	0	34	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0259	FALSE	125	705	46	456	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV2--TRAJ6	2	0	TRAV2	1523	chr14:22181066:+	TRAJ6	4524	chr14:23008016:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	HGNC_GENEFAM,TRAV2->T_cell_receptor_alpha_variable_2,chr14:22180544-22181066:+,TRAJ6->T_cell_receptor_alpha_joining_6,chr14:23008016-23008077:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LRMP--GCLM	1	1	LRMP	15828	chr12:25219446:+	GCLM	41301	chr1:94360284:-	ONLY_REF_SPLICE	YES	375	13	0.01	0.13	0.0129	0.0129	LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein,GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.13	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000156
MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	33	0	0.06	1	0.0129	0.0129	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	MHHCALL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0258	FALSE	272	151	14	158	0	FALSE	ACH-000156
G361_SKIN	CDC37--PDE4C	104	117	CDC37	6180	chr19:10505698:-	PDE4C	17889	chr19:18347869:-	INCL_NON_REF_SPLICE	YES	1212	0	0.15	1	1.1237	1.2642	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,PDE4C->chr19:18318771-18366229:-,phosphodiesterase_4C	G361_SKIN	0.15	1	2.3879	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	CDC37--PDE4C	54	117	CDC37	6181	chr19:10505697:-	PDE4C	17887	chr19:18347871:-	ONLY_REF_SPLICE	YES	1219	0	0.12	1	0.5835	1.2642	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,PDE4C->chr19:18318771-18366229:-,phosphodiesterase_4C	G361_SKIN	0.12	1	1.8477	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	TIMM23B--LINC00843	68	39	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7347	0.4214	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	G361_SKIN	1	1	1.1561	TRUE	508	994	45	981	0	FALSE	ACH-000572
G361_SKIN	AP003900.6--AC008132.1	66	21	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.7131	0.2269	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	G361_SKIN	1	1	0.94	TRUE	0	0	0	25	0	FALSE	ACH-000572
G361_SKIN	SIRT6--TARM1	55	7	SIRT6	1131	chr19:4182471:-	TARM1	12684	chr19:54579170:-	ONLY_REF_SPLICE	YES	7	0	0.9	1	0.5943	0.0756	SIRT6->chr19:4174106-4182601:-,sirtuin_6,TARM1->T_cell-interacting,_activating_receptor_on_myeloid_cells_1,chr19:54573149-54584634:-	G361_SKIN	0.9	1	0.6699	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	TIMM23--RP11-464F9.1	41	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	343	1	0.12	0.98	0.443	0.0864	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	G361_SKIN	0.12	0.98	0.5294	TRUE	519	3926	326	965	0	FALSE	ACH-000572
G361_SKIN	C15orf57--CBX3	29	44	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	88	44	0.45	0.62	0.3133	0.4754	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	G361_SKIN	0.45	0.62	0.7887	TRUE	267	562	48	632	0	FALSE	ACH-000572
G361_SKIN	ACVR1--CYTIP	33	12	ACVR1	7435	chr2:158674897:-	CYTIP	30748	chr2:158291259:-	ONLY_REF_SPLICE	YES	58	0	0.44	1	0.3566	0.1297	ACVR1->activin_A_receptor_type_1,chr2:158592958-158732374:-,CYTIP->chr2:158271131-158345473:-,cytohesin_1_interacting_protein	G361_SKIN	0.44	1	0.4863	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	MT-ND6--MT-TE	33	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3566	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G361_SKIN	1	1	0.3566	FALSE	499	1288	110	792	0	FALSE	ACH-000572
G361_SKIN	AP003900.6--AC008132.1	20	48	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	4	0	0.94	1	0.2161	0.5186	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	G361_SKIN	0.94	1	0.7347	TRUE	1	1	0	28	1	FALSE	ACH-000572
G361_SKIN	C15orf57--CBX3	17	22	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	90	46	0.3	0.46	0.1837	0.2377	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	G361_SKIN	0.3	0.46	0.4214	TRUE	267	562	48	632	0	FALSE	ACH-000572
G361_SKIN	ZNF699--SIRT6	19	14	ZNF699	2542	chr19:9415748:-	SIRT6	12780	chr19:4180906:-	ONLY_REF_SPLICE	YES	10	16	0.77	0.67	0.2053	0.1513	ZNF699->chr19:9404951-9420514:-,zinc_finger_protein_699,SIRT6->chr19:4174106-4182601:-,sirtuin_6	G361_SKIN	0.67	0.77	0.3566	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	PLXDC1--TAF13	21	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2269	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	G361_SKIN	1	1	0.2269	TRUE	7	10	0	216	0	FALSE	ACH-000572
G361_SKIN	SIRT6--TARM1	20	4	SIRT6	1131	chr19:4182471:-	TARM1	13488	chr19:54578366:-	ONLY_REF_SPLICE	YES	7	0	0.77	1	0.2161	0.0432	SIRT6->chr19:4174106-4182601:-,sirtuin_6,TARM1->T_cell-interacting,_activating_receptor_on_myeloid_cells_1,chr19:54573149-54584634:-	G361_SKIN	0.77	1	0.2593	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	CDC37--PDE4C	17	14	CDC37	6181	chr19:10505697:-	PDE4C	19947	chr19:18344210:-	ONLY_REF_SPLICE	YES	1219	58	0.02	0.35	0.1837	0.1513	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,PDE4C->chr19:18318771-18366229:-,phosphodiesterase_4C	G361_SKIN	0.02	0.35	0.335	TRUE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	NIPA2--POLA1	20	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2161	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	G361_SKIN	1	1	0.2161	TRUE	46	1352	75	139	0	FALSE	ACH-000572
G361_SKIN	OCA2--HERC2	19	2	OCA2	1135	chr15:28344370:-	HERC2	99885	chr15:28387539:-	ONLY_REF_SPLICE	YES	42	114	0.33	0.16	0.2053	0.0216	LOCAL_REARRANGEMENT:-:[11682],OCA2->OCA2_melanosomal_transmembrane_protein,chr15:28000021-28344504:-,HERC2->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_2,chr15:28356186-28567298:-	G361_SKIN	0.16	0.33	0.2269	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	MT-ND4--MT-ND4L	14	16	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	0	0.83	1	0.1513	0.1729	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	G361_SKIN	0.83	1	0.3242	FALSE	344	821	44	306	0	FALSE	ACH-000572
G361_SKIN	KDM4B--PLEKHF1	15	8	KDM4B	12322	chr19:5082515:+	PLEKHF1	38793	chr19:30164731:+	ONLY_REF_SPLICE	YES	49	2	0.32	0.92	0.1621	0.0864	KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,PLEKHF1->chr19:30155963-30166364:+,pleckstrin_homology_and_FYVE_domain_containing_1	G361_SKIN	0.32	0.92	0.2485	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	MT-TA--MT-TC	16	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1729	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	G361_SKIN	1	1	0.1729	FALSE	462	80	0	856	0	FALSE	ACH-000572
G361_SKIN	MT-ND4--MT-ND4L	15	3	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	58	0	0.24	1	0.1621	0.0324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	G361_SKIN	0.24	1	0.1945	FALSE	344	827	44	306	0	FALSE	ACH-000572
G361_SKIN	MT-ND6--MT-TE	15	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1621	0.0108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G361_SKIN	1	1	0.1729	FALSE	499	1288	110	792	0	FALSE	ACH-000572
G361_SKIN	ZNF578--NACC1	14	1	ZNF578	1032	chr19:52956860:+	NACC1	17542	chr19:13246014:+	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.1513	0.0108	ZNF578->chr19:52956829-53015407:+,zinc_finger_protein_578,NACC1->chr19:13228917-13251955:+,nucleus_accumbens_associated_1	G361_SKIN	0.94	1	0.1621	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	MT-ND6--MT-TE	13	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1405	0.0108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G361_SKIN	1	1	0.1513	FALSE	499	1288	110	792	0	FALSE	ACH-000572
G361_SKIN	MT-ND4--MT-ND4L	7	23	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	13	0	0.7	1	0.0756	0.2485	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	G361_SKIN	0.7	1	0.3241	FALSE	344	826	44	306	0	FALSE	ACH-000572
G361_SKIN	C15orf57--CBX3	6	22	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	90	46	0.24	0.38	0.0648	0.2377	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	G361_SKIN	0.24	0.38	0.3025	TRUE	267	562	48	632	0	FALSE	ACH-000572
G361_SKIN	MT-ND6--MT-TE	11	1	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.1189	0.0108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G361_SKIN	0.86	1	0.1297	FALSE	499	1288	110	792	0	FALSE	ACH-000572
G361_SKIN	TPPP--BRD9	11	1	TPPP	1118	chr5:693393:-	BRD9	23088	chr5:880004:-	ONLY_REF_SPLICE	YES	0	221	1	0.05	0.1189	0.0108	GTEx_FI:{Colon=[count:8=pct:4.2],Blood_Vessel=[count:8=pct:2.2],Esophagus=[count:8=pct:2.0],Brain=[count:3=pct:0.5],Lung=[count:3=pct:1.8],Uterus=[count:2=pct:4.7],Adipose_Tissue=[count:2=pct:0.7],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Muscle=[count:1=pct:0.4],Skin=[count:1=pct:0.3],Thyroid=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Adipose_-_Subcutaneous=1},TPPP->chr5:660883-693510:-,tubulin_polymerization_promoting_protein,BRD9->bromodomain_containing_9,chr5:850406-892939:-	G361_SKIN	0.05	1	0.1297	TRUE	29	26	4	4	0	FALSE	ACH-000572
G361_SKIN	MT-ND4--MT-ND4L	5	23	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	12	0	0.7	1	0.054	0.2485	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	G361_SKIN	0.7	1	0.3025	FALSE	344	826	44	306	0	FALSE	ACH-000572
G361_SKIN	MT-ND4--MT-ND4L	3	23	MT-ND4	1168	chrM:10927:+	MT-ND4L	5460	chrM:10551:+	INCL_NON_REF_SPLICE	YES	19	0	0.58	1	0.0324	0.2485	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	G361_SKIN	0.58	1	0.2809	FALSE	344	826	44	306	0	FALSE	ACH-000572
G361_SKIN	AP003900.6--AC008132.1	1	30	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	4	0	0.89	1	0.0108	0.3242	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	G361_SKIN	0.89	1	0.335	TRUE	0	0	0	12	0	TRUE	ACH-000572
G361_SKIN	RP1-34H18.1--NAV3	7	6	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0756	0.0648	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	G361_SKIN	1	1	0.1404	TRUE	254	575	65	124	0	FALSE	ACH-000572
G361_SKIN	RP11-444D3.1--SOX5	7	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	15	1	0.46	0.0756	0.0648	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	G361_SKIN	0.46	1	0.1404	TRUE	477	1352	189	275	0	FALSE	ACH-000572
G361_SKIN	AP003900.6--AC008132.1	6	9	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	0	32	1	0.32	0.0648	0.0972	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	G361_SKIN	0.32	1	0.162	TRUE	0	0	0	13	0	TRUE	ACH-000572
G361_SKIN	AP003900.6--AC008132.1	4	15	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0.1621	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	G361_SKIN	1	1	0.2053	TRUE	0	0	0	16	0	TRUE	ACH-000572
G361_SKIN	AP003900.6--AC008132.1	1	27	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	4	0	0.88	1	0.0108	0.2917	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	G361_SKIN	0.88	1	0.3025	TRUE	0	0	0	11	0	TRUE	ACH-000572
G361_SKIN	MT-ND4--MT-ND4L	6	5	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	6	0	0.65	1	0.0648	0.054	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	G361_SKIN	0.65	1	0.1188	FALSE	344	821	44	306	0	FALSE	ACH-000572
G361_SKIN	MT-ND4--MT-ND4L	5	5	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	827	0	0.01	1	0.054	0.054	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	G361_SKIN	0.01	1	0.108	FALSE	344	827	44	306	0	FALSE	ACH-000572
G361_SKIN	CIT--RP11-613M10.9	5	3	CIT	22900	chr12:120198743:-	RP11-613M10.9	58243	chr9:37974834:-	ONLY_REF_SPLICE	YES	71	75	0.1	0.1	0.054	0.0324	CIT->chr12:120123595-120315095:-,citron_rho-interacting_serine/threonine_kinase,RP11-613M10.9->chr9:37588410-38068684:-	G361_SKIN	0.1	0.1	0.0864	TRUE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	MT-ND3--MT-CO3	5	3	MT-ND3	1078	chrM:10136:+	MT-CO3	4979	chrM:9839:+	INCL_NON_REF_SPLICE	YES	1	1	0.89	0.89	0.054	0.0324	LOCAL_REARRANGEMENT:+:[69],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	G361_SKIN	0.89	0.89	0.0864	FALSE	2	2	0	11	0	FALSE	ACH-000572
G361_SKIN	RP11-444D3.1--SOX5	4	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	16	1	0.41	0.0432	0.0756	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	G361_SKIN	0.41	1	0.1188	TRUE	160	277	29	98	0	FALSE	ACH-000572
G361_SKIN	RP11-476K15.1--CTD-2015H3.2	5	3	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	19	0	0.3	1	0.054	0.0324	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	G361_SKIN	0.3	1	0.0864	FALSE	0	46	0	73	0	FALSE	ACH-000572
G361_SKIN	AP003900.6--AC008132.1	2	14	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	4	32	0.8	0.33	0.0216	0.1513	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	G361_SKIN	0.33	0.8	0.1729	TRUE	0	0	0	13	0	TRUE	ACH-000572
G361_SKIN	IMMP2L--IMMP2L-IT1	5	1	IMMP2L	12890	chr7:110526649:-	IMMP2L-IT1	19872	chr7:110364647:-	ONLY_REF_SPLICE	YES	126	1	0.05	0.86	0.054	0.0108	NEIGHBORS_OVERLAP:-:-:[1666],IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,IMMP2L-IT1->chr7:110364215-110365881:-	G361_SKIN	0.05	0.86	0.0648	FALSE	0	0	0	2	0	FALSE	ACH-000572
G361_SKIN	MT-ND4--MT-ND4L	4	4	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	969	0	0.01	1	0.0432	0.0432	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	G361_SKIN	0.01	1	0.0864	FALSE	344	827	44	306	0	FALSE	ACH-000572
G361_SKIN	IMMP2L--IMMP2L-IT1	4	3	IMMP2L	12890	chr7:110526649:-	IMMP2L-IT1	18798	chr7:110365831:-	INCL_NON_REF_SPLICE	YES	126	0	0.05	1	0.0432	0.0324	NEIGHBORS_OVERLAP:-:-:[1666],IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,IMMP2L-IT1->chr7:110364215-110365881:-	G361_SKIN	0.05	1	0.0756	FALSE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	MT-ND4--MT-ND4L	4	3	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	27	0	0.21	1	0.0432	0.0324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	G361_SKIN	0.21	1	0.0756	FALSE	344	826	44	306	0	FALSE	ACH-000572
G361_SKIN	MT-ND3--MT-CO3	4	1	MT-ND3	1064	chrM:10122:+	MT-CO3	5089	chrM:9949:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0432	0.0108	LOCAL_REARRANGEMENT:+:[69],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	G361_SKIN	0.83	1	0.054	FALSE	2	2	0	11	0	FALSE	ACH-000572
G361_SKIN	AC009499.1--RASGRP3	4	0	AC009499.1	1068	chr2:33932020:+	RASGRP3	21011	chr2:33736777:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	AC009499.1->chr2:33931953-34522820:+,RASGRP3->RAS_guanyl_releasing_protein_3,chr2:33661391-33789817:+	G361_SKIN	1	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	MT-ND3--MT-ATP8	4	0	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	G361_SKIN	1	1	0.0432	FALSE	351	233	23	137	0	FALSE	ACH-000572
G361_SKIN	RP11-123O10.4--GRIP1	3	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0.0432	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	G361_SKIN	1	1	0.0756	FALSE	416	2512	207	587	0	FALSE	ACH-000572
G361_SKIN	MT-ND4--MT-ND4L	3	3	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	24	0	0.2	1	0.0324	0.0324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	G361_SKIN	0.2	1	0.0648	FALSE	344	826	44	306	0	FALSE	ACH-000572
G361_SKIN	MT-ND4--MT-ND4L	3	3	MT-ND4	1279	chrM:11038:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	52	0	0.1	1	0.0324	0.0324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	G361_SKIN	0.1	1	0.0648	FALSE	344	827	44	306	0	FALSE	ACH-000572
G361_SKIN	MT-ND4--MT-ND4L	3	3	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	25	0	0.19	1	0.0324	0.0324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	G361_SKIN	0.19	1	0.0648	FALSE	344	826	44	306	0	FALSE	ACH-000572
G361_SKIN	RP11-476K15.1--CTD-2015H3.2	3	3	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	19	1	0.24	0.86	0.0324	0.0324	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	G361_SKIN	0.24	0.86	0.0648	FALSE	0	46	0	73	0	FALSE	ACH-000572
G361_SKIN	ZNF699--SIRT6	2	6	ZNF699	2542	chr19:9415748:-	SIRT6	14295	chr19:4179283:-	ONLY_REF_SPLICE	YES	10	115	0.44	0.07	0.0216	0.0648	ZNF699->chr19:9404951-9420514:-,zinc_finger_protein_699,SIRT6->chr19:4174106-4182601:-,sirtuin_6	G361_SKIN	0.07	0.44	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	MT-ND3--MT-ATP8	3	1	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	497	1	0.01	0.8	0.0324	0.0108	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	G361_SKIN	0.01	0.8	0.0432	FALSE	351	233	23	137	0	FALSE	ACH-000572
G361_SKIN	MT-ND4--MT-ND4L	3	1	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	7	0	0.36	1	0.0324	0.0108	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	G361_SKIN	0.36	1	0.0432	FALSE	344	826	44	306	0	FALSE	ACH-000572
G361_SKIN	MT-ND6--MT-TE	3	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0.0108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G361_SKIN	1	1	0.0432	FALSE	499	1288	110	792	0	FALSE	ACH-000572
G361_SKIN	MT-ND6--MT-TE	3	1	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0324	0.0108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G361_SKIN	0.67	1	0.0432	FALSE	499	1288	110	792	0	FALSE	ACH-000572
G361_SKIN	RAB11A--PTPLAD1	2	5	RAB11A	3450	chr15:66085110:+	PTPLAD1	23469	chr15:65844014:+	ONLY_REF_SPLICE	YES	0	698	1	0.01	0.0216	0.054	RAB11A->RAB11A,_member_RAS_oncogene_family,chr15:66018392-66184329:+,PTPLAD1->chr15:65822756-65870687:+	G361_SKIN	0.01	1	0.0756	FALSE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	MT-ND4--MT-ND4L	3	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	G361_SKIN	1	1	0.0324	FALSE	344	821	44	306	0	FALSE	ACH-000572
G361_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G361_SKIN	1	1	0.0324	FALSE	499	1288	110	792	0	FALSE	ACH-000572
G361_SKIN	MT-TW--MT-ND2	3	0	MT-TW	1005	chrM:5516:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	G361_SKIN	1	1	0.0324	FALSE	14	0	0	19	0	FALSE	ACH-000572
G361_SKIN	PSPH--NUPL2	3	0	PSPH	1467	chr7:56118831:-	NUPL2	24205	chr7:23239077:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase,NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2	G361_SKIN	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	RP11-444D3.1--SOX5	2	4	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	15	1	0.29	0.0216	0.0432	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	G361_SKIN	0.29	1	0.0648	TRUE	274	363	69	150	0	FALSE	ACH-000572
G361_SKIN	RP1-34H18.1--RP11-781A6.1	2	1	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0.0108	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	G361_SKIN	1	1	0.0324	TRUE	94	160	11	37	0	FALSE	ACH-000572
G361_SKIN	ADK--CCDC14	2	0	ADK	1142	chr10:75911101:+	CCDC14	29294	chr3:123667979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ADK->adenosine_kinase,chr10:75910960-76469061:+,CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	AKT3--ADSS	2	0	AKT3	3500	chr1:244006427:-	ADSS	38307	chr1:244601070:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,ADSS->adenylosuccinate_synthase,chr1:244571796-244615436:-	G361_SKIN	1	1	0.0216	TRUE	0	1	0	4	1	TRUE	ACH-000572
G361_SKIN	ANO4--SCYL2	2	0	ANO4	1022	chr12:101111325:+	SCYL2	43231	chr12:100676721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ANO4->anoctamin_4,chr12:101111304-101522419:+,SCYL2->SCY1_like_pseudokinase_2,chr12:100660918-100735502:+	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	B2M--MXI1	2	0	B2M	1137	chr15:45003811:+	MXI1	14593	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	CHCHD3--EXOC4	2	0	CHCHD3	1232	chr7:132766617:-	EXOC4	26235	chr7:133002038:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	COPS4--PLSCR1	2	0	COPS4	1852	chr4:83956451:+	PLSCR1	21270	chr3:146254352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	COPS4->COP9_signalosome_subunit_4,chr4:83955600-83996971:+,PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	GNPDA2--SLC12A9	2	0	GNPDA2	1122	chr4:44728491:-	SLC12A9	22631	chr7:100454490:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GNPDA2->chr4:44684217-44728612:-,glucosamine-6-phosphate_deaminase_2,SLC12A9->chr7:100424442-100464631:+,solute_carrier_family_12_member_9	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	GPC6--KIAA1468	2	0	GPC6	7767	chr13:94958377:+	KIAA1468	28980	chr18:59911997:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GPC6->chr13:93879095-95059655:+,glypican_6,KIAA1468->KIAA1468,chr18:59854491-59974355:+	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	HPS3--NSUN2	2	0	HPS3	1357	chr3:148847727:+	NSUN2	42703	chr5:6600345:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	HPS3->HPS3,_biogenesis_of_lysosomal_organelles_complex_2_subunit_1,chr3:148847371-148891519:+,NSUN2->NOP2/Sun_RNA_methyltransferase_family_member_2,chr5:6599352-6633404:-	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	LINC01059--TTC3	2	0	LINC01059	1432	chr11:123325537:+	TTC3	26007	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LINC01059->chr11:123325106-123331118:+,long_intergenic_non-protein_coding_RNA_1059,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	POLA1--USP10	2	0	POLA1	37730	chrX:24948666:+	USP10	53081	chr16:84792322:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit,USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	PTPLAD1--SNX17	2	0	PTPLAD1	6124	chr15:65844056:+	SNX17	27723	chr2:27598973:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	PTPLAD1->chr15:65822756-65870687:+,SNX17->chr2:27593389-27599995:+,sorting_nexin_17	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	REEP5--MRPS27	2	0	REEP5	3516	chr5:112238077:-	MRPS27	16292	chr5:71593529:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	REEP5->chr5:112212084-112258236:-,receptor_accessory_protein_5,MRPS27->chr5:71515236-71616473:-,mitochondrial_ribosomal_protein_S27	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	G361_SKIN	1	1	0.0216	TRUE	0	1	0	17	0	TRUE	ACH-000572
G361_SKIN	SIRT6--TARM1	2	0	SIRT6	1131	chr19:4182471:-	TARM1	14386	chr19:54577468:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	SIRT6->chr19:4174106-4182601:-,sirtuin_6,TARM1->T_cell-interacting,_activating_receptor_on_myeloid_cells_1,chr19:54573149-54584634:-	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	STARD4--DERA	2	0	STARD4	3319	chr5:110842028:-	DERA	23284	chr12:16135242:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	STARD4->StAR_related_lipid_transfer_domain_containing_4,chr5:110831731-110848288:-,DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase	G361_SKIN	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	USO1--G3BP2	2	0	USO1	1293	chr4:76650069:+	G3BP2	34605	chr4:76587233:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LOCAL_INVERSION:+:-:[68],USO1->USO1_vesicle_transport_factor,chr4:76649777-76735382:+,G3BP2->G3BP_stress_granule_assembly_factor_2,chr4:76567966-76649709:-	G361_SKIN	1	1	0.0216	TRUE	0	0	0	3	0	TRUE	ACH-000572
G361_SKIN	CTC-786C10.1--UNKL	1	2	CTC-786C10.1	1532	chr16:85205413:+	UNKL	18514	chr16:1444216:-	ONLY_REF_SPLICE	YES	0	4	1	0.43	0.0108	0.0216	CTC-786C10.1->chr16:85204882-85218969:+,UNKL->chr16:1413206-1464752:-,unkempt_family_like_zinc_finger	G361_SKIN	0.43	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000572
G361_SKIN	SCARB1--UBC	1	2	SCARB1	10920	chr12:125298748:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	1286	50	0	0.06	0.0108	0.0216	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	G361_SKIN	0	0.06	0.0324	FALSE	1	0	0	5	0	FALSE	ACH-000572
G361_SKIN	SCARB1--UBC	1	2	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	NO	259	50	0.01	0.06	0.0108	0.0216	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	G361_SKIN	0.01	0.06	0.0324	FALSE	55	66	6	101	0	FALSE	ACH-000572
G361_SKIN	TPPP--BRD9	1	2	TPPP	2433	chr5:677865:-	BRD9	23088	chr5:880004:-	ONLY_REF_SPLICE	YES	39	221	0.07	0.01	0.0108	0.0216	GTEx_FI:{Colon=[count:8=pct:4.2],Blood_Vessel=[count:8=pct:2.2],Esophagus=[count:8=pct:2.0],Brain=[count:3=pct:0.5],Lung=[count:3=pct:1.8],Uterus=[count:2=pct:4.7],Adipose_Tissue=[count:2=pct:0.7],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Muscle=[count:1=pct:0.4],Skin=[count:1=pct:0.3],Thyroid=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Adipose_-_Subcutaneous=1},TPPP->chr5:660883-693510:-,tubulin_polymerization_promoting_protein,BRD9->bromodomain_containing_9,chr5:850406-892939:-	G361_SKIN	0.01	0.07	0.0324	FALSE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	ZNF792--TBCB	1	2	ZNF792	3180	chr19:35451139:-	TBCB	16445	chr19:36612429:+	ONLY_REF_SPLICE	YES	13	273	0.19	0.01	0.0108	0.0216	ZNF792->chr19:35447258-35454953:-,zinc_finger_protein_792,TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B	G361_SKIN	0.01	0.19	0.0324	FALSE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	ABCA1--SLC44A1	1	1	ABCA1	8356	chr9:107620803:-	SLC44A1	60423	chr9:108061501:+	ONLY_REF_SPLICE	YES	78	28	0.03	0.07	0.0108	0.0108	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Nerve=[count:2=pct:1.2]},GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},ABCA1->ATP_binding_cassette_subfamily_A_member_1,Oncogene{Bushman},chr9:107543283-107690518:-,SLC44A1->chr9:108006903-108201452:+,solute_carrier_family_44_member_1	G361_SKIN	0.03	0.07	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	ARPC1B--CKAP5	1	1	ARPC1B	3540	chr7:98975062:+	CKAP5	38856	chr11:46800149:-	ONLY_REF_SPLICE	YES	426	387	0	0.01	0.0108	0.0108	ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5	G361_SKIN	0	0.01	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	ATP6V1C1--EIF3E	1	1	ATP6V1C1	1163	chr8:104033453:+	EIF3E	36103	chr8:109241424:-	ONLY_REF_SPLICE	YES	583	1568	0	0	0.0108	0.0108	ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	G361_SKIN	0	0	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	CAPZA2--RPL17	1	1	CAPZA2	3371	chr7:116502704:+	RPL17	26339	chr18:47017954:-	ONLY_REF_SPLICE	YES	121	1970	0.02	0	0.0108	0.0108	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,RPL17->chr18:47014851-47018906:-,ribosomal_protein_L17	G361_SKIN	0	0.02	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	FMN1--SCG5	1	1	FMN1	13393	chr15:33357158:-	SCG5	48568	chr15:32935787:+	ONLY_REF_SPLICE	YES	431	0	0	1	0.0108	0.0108	GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hippocampus=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cortex=1},LOCAL_INVERSION:-:+:[68448],FMN1->chr15:33057747-33486897:-,formin_1,SCG5->chr15:32933877-32989299:+,secretogranin_V	G361_SKIN	0	1	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	HDAC9--SNX13	1	1	HDAC9	4313	chr7:18201972:+	SNX13	77183	chr7:17908113:-	ONLY_REF_SPLICE	NO	44	148	0.04	0.01	0.0108	0.0108	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},HDAC9->chr7:18126572-19042039:+,histone_deacetylase_9,SNX13->chr7:17830385-17980124:-,sorting_nexin_13	G361_SKIN	0.01	0.04	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	LDLRAD4--AFG3L2	1	1	LDLRAD4	6361	chr18:13387761:+	AFG3L2	37190	chr18:12371690:-	ONLY_REF_SPLICE	YES	37	76	0.05	0.03	0.0108	0.0108	LDLRAD4->chr18:13217497-13652754:+,low_density_lipoprotein_receptor_class_A_domain_containing_4,AFG3L2->AFG3_like_matrix_AAA_peptidase_subunit_2,chr18:12328943-12377313:-	G361_SKIN	0.03	0.05	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	LINC01036--LINC01037	1	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0108	0.0108	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	G361_SKIN	1	1	0.0216	FALSE	0	24	0	62	0	FALSE	ACH-000572
G361_SKIN	MBP--ZNF236	1	1	MBP	13149	chr18:74728788:-	ZNF236	67983	chr18:74659477:+	ONLY_REF_SPLICE	YES	1778	23	0	0.08	0.0108	0.0108	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_INVERSION:-:+:[8100],MBP->chr18:74690783-74845639:-,myelin_basic_protein,ZNF236->chr18:74534563-74682683:+,zinc_finger_protein_236	G361_SKIN	0	0.08	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	NAA35--GOLM1	1	1	NAA35	6530	chr9:88577095:+	GOLM1	34481	chr9:88667506:-	ONLY_REF_SPLICE	YES	204	736	0.01	0	0.0108	0.0108	LOCAL_INVERSION:+:-:[3848],NAA35->N(alpha)-acetyltransferase_35,_NatC_auxiliary_subunit,chr9:88556061-88637213:+,GOLM1->chr9:88641061-88715088:-,golgi_membrane_protein_1	G361_SKIN	0	0.01	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	OCA2--HERC2	1	1	OCA2	1135	chr15:28344370:-	HERC2	100432	chr15:28386992:-	ONLY_REF_SPLICE	YES	42	215	0.05	0.01	0.0108	0.0108	LOCAL_REARRANGEMENT:-:[11682],OCA2->OCA2_melanosomal_transmembrane_protein,chr15:28000021-28344504:-,HERC2->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_2,chr15:28356186-28567298:-	G361_SKIN	0.01	0.05	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	PQLC1--TXNL4A	1	1	PQLC1	7125	chr18:77703329:-	TXNL4A	29870	chr18:77737701:-	ONLY_REF_SPLICE	YES	238	832	0.01	0	0.0108	0.0108	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:1=pct:0.3],Liver=[count:1=pct:0.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=2,Artery_-_Coronary=1,Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[21203],PQLC1->PQ_loop_repeat_containing_1,chr18:77662420-77711664:-,TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A	G361_SKIN	0	0.01	0.0216	FALSE	2	1	0	1	0	FALSE	ACH-000572
G361_SKIN	RALY--EIF2S2	1	1	RALY	3636	chr20:32619410:+	EIF2S2	18823	chr20:32693351:-	ONLY_REF_SPLICE	YES	683	591	0	0	0.0108	0.0108	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},NEIGHBORS_OVERLAP:+:-:[20010],RALY->RALY_heterogeneous_nuclear_ribonucleoprotein,chr20:32581452-32696114:+,EIF2S2->chr20:32676104-32700138:-,eukaryotic_translation_initiation_factor_2_subunit_beta	G361_SKIN	0	0	0.0216	FALSE	0	1	0	5	0	FALSE	ACH-000572
G361_SKIN	RALY--EIF2S2	1	1	RALY	1486	chr20:32581937:+	EIF2S2	18823	chr20:32693351:-	ONLY_REF_SPLICE	YES	520	591	0	0	0.0108	0.0108	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},NEIGHBORS_OVERLAP:+:-:[20010],RALY->RALY_heterogeneous_nuclear_ribonucleoprotein,chr20:32581452-32696114:+,EIF2S2->chr20:32676104-32700138:-,eukaryotic_translation_initiation_factor_2_subunit_beta	G361_SKIN	0	0	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	RNF13--PFN2	1	1	RNF13	12719	chr3:149639014:+	PFN2	23444	chr3:149686337:-	ONLY_REF_SPLICE	YES	332	1079	0.01	0	0.0108	0.0108	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[2765],RNF13->chr3:149530495-149679926:+,ring_finger_protein_13,PFN2->chr3:149682691-149768575:-,profilin_2	G361_SKIN	0	0.01	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	RNF144B--DEK	1	1	RNF144B	2552	chr6:18387861:+	DEK	20428	chr6:18258636:-	ONLY_REF_SPLICE	YES	86	225	0.02	0.01	0.0108	0.0108	GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Colon_-_Sigmoid=1},RNF144B->chr6:18368779-18469105:+,ring_finger_protein_144B,DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-	G361_SKIN	0.01	0.02	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	SLC1A3--NIPSNAP3A	1	1	SLC1A3	3250	chr5:36608706:+	NIPSNAP3A	21995	chr9:107513237:+	ONLY_REF_SPLICE	YES	38	93	0.05	0.02	0.0108	0.0108	SLC1A3->chr5:36606457-36688436:+,solute_carrier_family_1_member_3,NIPSNAP3A->chr9:107509969-107522403:+,nipsnap_homolog_3A	G361_SKIN	0.02	0.05	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000572
G361_SKIN	XRCC6--NHP2L1	1	1	XRCC6	5848	chr22:42033795:+	NHP2L1	24023	chr22:42071199:-	ONLY_REF_SPLICE	YES	2678	2246	0	0	0.0108	0.0108	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[9890],XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+,NHP2L1->chr22:42069934-42086508:-	G361_SKIN	0	0	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000572
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	205	170	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	174	2	0.68	0.99	2.3888	1.981	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.68	0.99	4.3698	TRUE	0	48	0	65	48	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	IGF2BP2--RPL23A	122	237	IGF2BP2	1274	chr3:185542571:-	RPL23A	25635	chr17:27046501:+	INCL_NON_REF_SPLICE	YES	298	0	0.55	1	1.4216	2.7617	IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,RPL23A->chr17:27046411-27051377:+,ribosomal_protein_L23a	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.55	1	4.1833	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	RSRC1--MLF1	154	92	RSRC1	9720	chr3:157921034:+	MLF1	29503	chr3:158310223:+	ONLY_REF_SPLICE	YES	149	110	0.62	0.69	1.7945	1.0721	NEIGHBORS[25433],RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MLF1->Oncogene{Bushman},chr3:158288952-158325041:+,myeloid_leukemia_factor_1	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.62	0.69	2.8666	FALSE	0	1	0	2	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	GPI--CATSPERG	146	110	GPI	10123	chr19:34872424:+	CATSPERG	45004	chr19:38860799:+	ONLY_REF_SPLICE	YES	1242	3	0.17	0.99	1.7013	1.2818	GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase,CATSPERG->cation_channel_sperm_associated_auxiliary_subunit_gamma,chr19:38826415-38861589:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.17	0.99	2.9831	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	CCDC9--YARS	144	2	CCDC9	1630	chr19:47759866:+	YARS	17616	chr1:33272212:-	ONLY_REF_SPLICE	YES	0	505	1	0.22	1.678	0.0233	CCDC9->chr19:47759237-47775210:+,coiled-coil_domain_containing_9,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.22	1	1.7013	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	IGF2BP2--RPL23A	101	126	IGF2BP2	1274	chr3:185542571:-	RPL23A	26859	chr17:27047725:+	ONLY_REF_SPLICE	YES	298	205	0.43	0.53	1.1769	1.4683	IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,RPL23A->chr17:27046411-27051377:+,ribosomal_protein_L23a	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.43	0.53	2.6452	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	84	40	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9788	0.4661	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.99	1	1.4449	TRUE	508	994	45	981	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	8	181	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	174	0	0.52	1	0.0932	2.1092	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.52	1	2.2024	TRUE	0	35	0	55	35	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	GPI--CATSPERG	20	122	GPI	10123	chr19:34872424:+	CATSPERG	44817	chr19:38860612:+	ONLY_REF_SPLICE	YES	1242	0	0.1	1	0.2331	1.4216	GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase,CATSPERG->cation_channel_sperm_associated_auxiliary_subunit_gamma,chr19:38826415-38861589:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.1	1	1.6547	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	ATP2A2--ZDHHC11B	44	22	ATP2A2	5892	chr12:110734542:+	ZDHHC11B	42803	chr5:716980:-	ONLY_REF_SPLICE	YES	329	1	0.17	0.99	0.5127	0.2564	ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+,ZDHHC11B->chr5:710475-767067:-,zinc_finger_DHHC-type_containing_11B	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.17	0.99	0.7691	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	45	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	484	2	0.09	0.96	0.5244	0.0583	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.09	0.96	0.5827	TRUE	519	3926	326	965	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	FYCO1--ZNF589	36	2	FYCO1	1103	chr3:46037214:-	ZNF589	31286	chr3:48289115:+	ONLY_REF_SPLICE	YES	5	13	0.88	0.75	0.4195	0.0233	FYCO1->FYVE_and_coiled-coil_domain_containing_1,chr3:45959396-46037316:-,ZNF589->chr3:48282590-48340743:+,zinc_finger_protein_589	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.75	0.88	0.4428	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	GPI--CATSPERG	4	113	GPI	10123	chr19:34872424:+	CATSPERG	44893	chr19:38860688:+	INCL_NON_REF_SPLICE	YES	1242	1	0.09	0.99	0.0466	1.3168	GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase,CATSPERG->cation_channel_sperm_associated_auxiliary_subunit_gamma,chr19:38826415-38861589:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.09	0.99	1.3634	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	RSRC1--MLF1	8	93	RSRC1	9720	chr3:157921034:+	MLF1	28430	chr3:158306641:+	ONLY_REF_SPLICE	YES	149	117	0.4	0.46	0.0932	1.0837	NEIGHBORS[25433],RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MLF1->Oncogene{Bushman},chr3:158288952-158325041:+,myeloid_leukemia_factor_1	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.4	0.46	1.1769	FALSE	0	1	0	2	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	24	28	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	95	57	0.35	0.48	0.2797	0.3263	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.35	0.48	0.606	TRUE	267	562	48	632	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	19	37	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	98	56	0.36	0.5	0.2214	0.4312	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.36	0.5	0.6526	TRUE	267	562	48	632	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	24	16	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.89	0.2797	0.1864	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.4661	TRUE	458	1351	185	561	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	28	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3263	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.3263	TRUE	0	0	0	518	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	23	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	17	1	0.66	0.268	0.1165	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.66	1	0.3845	TRUE	465	1949	224	605	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	RSRC1--MLF1	1	94	RSRC1	10797	chr3:157943522:+	MLF1	29503	chr3:158310223:+	ONLY_REF_SPLICE	YES	151	110	0.39	0.46	0.0117	1.0954	NEIGHBORS[25433],RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MLF1->Oncogene{Bushman},chr3:158288952-158325041:+,myeloid_leukemia_factor_1	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.39	0.46	1.1071	FALSE	0	0	0	2	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	CACNG8--ATP2A2	22	8	CACNG8	3611	chr19:54483261:+	ATP2A2	21640	chr12:110760797:+	ONLY_REF_SPLICE	YES	3	345	0.91	0.08	0.2564	0.0932	CACNG8->calcium_voltage-gated_channel_auxiliary_subunit_gamma_8,chr19:54466294-54493469:+,ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.08	0.91	0.3496	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	PALM2-AKAP2--RP11-654G14.1	23	4	PALM2-AKAP2	9458	chr9:112778319:+	RP11-654G14.1	24312	chr8:118142150:+	ONLY_REF_SPLICE	YES	25	0	0.52	1	0.268	0.0466	PALM2-AKAP2->PALM2-AKAP2_readthrough,chr9:112542589-112934792:+,RP11-654G14.1->chr8:118140694-118142538:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.52	1	0.3146	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	20	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2331	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.2331	TRUE	7	10	0	216	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	17	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1981	0.0117	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.2098	FALSE	462	80	0	856	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	SRGAP1--RPS11P6	15	7	SRGAP1	1591	chr12:64238663:+	RPS11P6	36583	chr12:64621654:+	ONLY_REF_SPLICE	YES	7	0	0.76	1	0.1748	0.0816	NEIGHBORS[74504],SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,RPS11P6->chr12:64616117-64790845:+,ribosomal_protein_S11_pseudogene_6	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.76	1	0.2564	FALSE	0	2	0	2	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	GPI--CATSPERG	2	56	GPI	10123	chr19:34872424:+	CATSPERG	45371	chr19:38861166:+	ONLY_REF_SPLICE	YES	1242	18	0.04	0.76	0.0233	0.6526	GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase,CATSPERG->cation_channel_sperm_associated_auxiliary_subunit_gamma,chr19:38826415-38861589:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.04	0.76	0.6759	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	DRAM1--KCNAB1	12	9	DRAM1	1570	chr12:102271698:+	KCNAB1	17107	chr3:155836000:+	ONLY_REF_SPLICE	YES	38	0	0.36	1	0.1398	0.1049	DRAM1->DNA_damage_regulated_autophagy_modulator_1,Oncogene{Bushman},chr12:102271129-102405908:+,KCNAB1->chr3:155755490-156256545:+,potassium_voltage-gated_channel_subfamily_A_member_regulatory_beta_subunit_1	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.36	1	0.2447	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	14	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1631	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.1631	TRUE	0	16	0	53	13	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	NFE2L1--CCDC9	12	4	NFE2L1	3854	chr17:46128990:+	CCDC9	17365	chr19:47761587:+	ONLY_REF_SPLICE	YES	148	4	0.1	0.8	0.1398	0.0466	NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,CCDC9->chr19:47759237-47775210:+,coiled-coil_domain_containing_9	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.1	0.8	0.1864	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	RSRC1--MLF1	3	34	RSRC1	9720	chr3:157921034:+	MLF1	31496	chr3:158314651:+	ONLY_REF_SPLICE	YES	149	117	0.2	0.24	0.035	0.3962	NEIGHBORS[25433],RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MLF1->Oncogene{Bushman},chr3:158288952-158325041:+,myeloid_leukemia_factor_1	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.2	0.24	0.4312	FALSE	0	0	0	2	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	3	28	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	95	57	0.25	0.35	0.035	0.3263	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.25	0.35	0.3613	TRUE	267	562	48	632	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	RSRC1--MLF1	4	24	RSRC1	6214	chr3:157841780:+	MLF1	29503	chr3:158310223:+	ONLY_REF_SPLICE	YES	155	110	0.15	0.2	0.0466	0.2797	NEIGHBORS[25433],RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MLF1->Oncogene{Bushman},chr3:158288952-158325041:+,myeloid_leukemia_factor_1	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.15	0.2	0.3263	FALSE	0	0	0	3	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	RSRC1--MLF1	1	35	RSRC1	10797	chr3:157943522:+	MLF1	31496	chr3:158314651:+	ONLY_REF_SPLICE	YES	151	117	0.19	0.24	0.0117	0.4078	NEIGHBORS[25433],RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MLF1->Oncogene{Bushman},chr3:158288952-158325041:+,myeloid_leukemia_factor_1	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.19	0.24	0.4195	FALSE	0	0	0	1	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	RP11-319G9.5--WWOX	8	4	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	6	1	0.67	0.0932	0.0466	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.1398	FALSE	154	425	28	76	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	YIPF4--TTC27	6	12	YIPF4	6127	chr2:32526564:+	TTC27	33866	chr2:32958895:+	ONLY_REF_SPLICE	YES	137	60	0.12	0.23	0.0699	0.1398	YIPF4->Yip1_domain_family_member_4,chr2:32502979-32541663:+,TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.12	0.23	0.2097	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	CTD-2544M6.1--LINC00923	8	0	CTD-2544M6.1	4364	chr15:98589896:-	LINC00923	10269	chr15:98301891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0932	0	CTD-2544M6.1->chr15:98589896-98836406:-,LINC00923->chr15:98285448-98417780:-,long_intergenic_non-protein_coding_RNA_923	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.0932	TRUE	0	3	0	6	3	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	EEF2--RPS28	7	2	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	5740	0	0	1	0.0816	0.0233	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0	1	0.1049	TRUE	0	0	0	100	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	C11orf68--DRAP1	7	1	C11orf68	1087	chr11:65686502:-	DRAP1	6880	chr11:65687297:+	INCL_NON_REF_SPLICE	YES	0	1285	1	0.01	0.0816	0.0117	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0933	FALSE	0	1	0	6	1	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	ZNF589--FYCO1	7	1	ZNF589	1115	chr3:48282704:+	FYCO1	17531	chr3:46026514:-	ONLY_REF_SPLICE	YES	8	3	0.5	0.73	0.0816	0.0117	ZNF589->chr3:48282590-48340743:+,zinc_finger_protein_589,FYCO1->FYVE_and_coiled-coil_domain_containing_1,chr3:45959396-46037316:-	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.5	0.73	0.0933	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	AC113189.5--PHF23	6	4	AC113189.5	1155	chr17:7487236:-	PHF23	8172	chr17:7140979:-	ONLY_REF_SPLICE	YES	7	41	0.59	0.2	0.0699	0.0466	AC113189.5->chr17:7485282-7487390:-,PHF23->PHD_finger_protein_23,chr17:7138347-7143041:-	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.2	0.59	0.1165	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	7	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0816	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.0816	FALSE	183	104	9	328	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	7	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0816	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.0816	FALSE	183	104	9	328	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	TAOK3--VSIG10	6	3	TAOK3	1298	chr12:118810453:-	VSIG10	43504	chr12:118555687:-	ONLY_REF_SPLICE	YES	13	24	0.41	0.27	0.0699	0.035	NEIGHBORS[13775],TAOK3->TAO_kinase_3,chr12:118587606-118810750:-,VSIG10->V-set_and_immunoglobulin_domain_containing_10,chr12:118501398-118573831:-	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.27	0.41	0.1049	FALSE	0	0	0	1	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	PALM2-AKAP2--RP11-654G14.1	5	4	PALM2-AKAP2	9458	chr9:112778319:+	RP11-654G14.1	24308	chr8:118142146:+	INCL_NON_REF_SPLICE	YES	25	0	0.26	1	0.0583	0.0466	PALM2-AKAP2->PALM2-AKAP2_readthrough,chr9:112542589-112934792:+,RP11-654G14.1->chr8:118140694-118142538:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.26	1	0.1049	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	4	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0466	0.0932	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.1398	FALSE	515	4851	409	746	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	CCDC9--YARS	5	3	CCDC9	2930	chr19:47761166:+	YARS	17616	chr1:33272212:-	ONLY_REF_SPLICE	YES	5	505	0.62	0.02	0.0583	0.035	CCDC9->chr19:47759237-47775210:+,coiled-coil_domain_containing_9,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.02	0.62	0.0933	TRUE	0	0	0	1	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	CALM3--MT-ND4L	5	2	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1439	0	0	1	0.0583	0.0233	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0	1	0.0816	FALSE	1	1	0	107	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	AKAP2--SLC30A8	4	0	AKAP2	7582	chr9:112778319:+	SLC30A8	33046	chr8:118159058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	AKAP2->A-kinase_anchoring_protein_2,chr9:112542769-112934792:+,SLC30A8->chr8:117962512-118188953:+,solute_carrier_family_30_member_8	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	AP000350.4--PKM	3	3	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	11	1	0.35	0.035	0.035	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.35	1	0.07	TRUE	0	0	0	14	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	3	MT-ATP6	1303	chrM:8829:+	MT-CO1	5135	chrM:6357:+	INCL_NON_REF_SPLICE	YES	14983	14090	0	0	0.035	0.035	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0	0	0.07	FALSE	183	104	9	328	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	C11orf68--DRAP1	3	2	C11orf68	1088	chr11:65686501:-	DRAP1	6884	chr11:65687301:+	INCL_NON_REF_SPLICE	YES	0	1264	1	0	0.035	0.0233	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0	1	0.0583	FALSE	0	1	0	6	1	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	1	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3042	17062	0	0	0.035	0.0117	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0	0	0.0467	FALSE	183	104	9	328	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	EIF1--RPS28	3	0	EIF1	1089	chr17:39845225:+	RPS28	8128	chr19:8386385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.035	TRUE	0	0	0	81	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	EIF1--RPS28	3	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.035	TRUE	0	0	0	81	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	EIF1--RPS28	3	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.035	TRUE	0	0	0	81	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0117	0.0932	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.1049	FALSE	407	2205	196	549	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	CCDC9--YARS	2	3	CCDC9	2675	chr19:47760911:+	YARS	17616	chr1:33272212:-	ONLY_REF_SPLICE	NO	2	505	0.71	0.01	0.0233	0.035	CCDC9->chr19:47759237-47775210:+,coiled-coil_domain_containing_9,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.01	0.71	0.0583	FALSE	0	0	0	1	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	CCDC9--YARS	2	2	CCDC9	1630	chr19:47759866:+	YARS	19117	chr1:33263444:-	ONLY_REF_SPLICE	YES	0	368	1	0.01	0.0233	0.0233	CCDC9->chr19:47759237-47775210:+,coiled-coil_domain_containing_9,YARS->chr1:33240840-33283754:-,tyrosyl-tRNA_synthetase	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0466	FALSE	0	0	0	1	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	MTAP--CDKN2B-AS1	2	2	MTAP	9899	chr9:21854869:+	CDKN2B-AS1	33636	chr9:22063943:+	ONLY_REF_SPLICE	YES	394	0	0.01	1	0.0233	0.0233	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0466	FALSE	0	1	0	1	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	SLC45A4--GPI	2	2	SLC45A4	1210	chr8:142318195:-	GPI	32225	chr19:34884153:+	ONLY_REF_SPLICE	YES	0	1339	1	0	0.0233	0.0233	SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0	1	0.0466	FALSE	0	0	0	1	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	2	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	2	1	0.67	0.0233	0.0233	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.0466	TRUE	62	24	1	171	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	AC087294.2--DZIP1	2	0	AC087294.2	1120	chr17:21117763:+	DZIP1	25288	chr13:96246340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	AC087294.2->chr17:21117644-21133348:+,DZIP1->DAZ_interacting_zinc_finger_protein_1,chr13:96230457-96296957:-	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	2	0	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	11	0	26	8	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	C17orf76-AS1--FAF1	2	0	C17orf76-AS1	1593	chr17:16342728:+	FAF1	18117	chr1:51210447:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	C17orf76-AS1->chr17:16342136-16381992:+,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	CMC2--MECP2	2	0	CMC2	2457	chr16:81040339:-	MECP2	26952	chrX:153298008:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CMC2->C-x9-C_motif_containing_2,chr16:81009698-81053875:-,MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	IQCG--APBB2	2	0	IQCG	1614	chr3:197686400:-	APBB2	38589	chr4:40947087:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	IQCG->IQ_motif_containing_G,chr3:197615946-197687013:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	PNKP--CHAF1A	2	0	PNKP	2511	chr19:50369656:-	CHAF1A	20044	chr19:4430546:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	PNKP->chr19:50364461-50371166:-,polynucleotide_kinase_3'-phosphatase,CHAF1A->chr19:4402659-4445015:+,chromatin_assembly_factor_1_subunit_A	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	ANXA1--HNRNPA2B1	1	1	ANXA1	13039	chr9:75784070:+	HNRNPA2B1	20942	chr7:26237486:-	ONLY_REF_SPLICE	YES	2209	4204	0	0	0.0117	0.0117	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0	0	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	ARHGAP15--KYNU	1	1	ARHGAP15	3050	chr2:143887035:+	KYNU	49221	chr2:143742653:+	ONLY_REF_SPLICE	YES	17	0	0.11	1	0.0117	0.0117	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_REARRANGEMENT:+:[49041],ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+,KYNU->chr2:143635067-143799890:+,kynureninase	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	C19orf25--DAZAP1	1	1	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	92	362	0.02	0.01	0.0117	0.0117	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0234	FALSE	6	7	1	24	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	FOSL1--DRAP1	1	1	FOSL1	1333	chr11:65667712:-	DRAP1	9128	chr11:65687251:+	ONLY_REF_SPLICE	NO	1388	982	0	0	0.0117	0.0117	LOCAL_INVERSION:-:+:[18684],FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0	0	0.0234	FALSE	0	0	0	6	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	NCOR2--UBC	1	1	NCOR2	25102	chr12:124862783:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	64	71	0.03	0.03	0.0117	0.0117	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.03	0.03	0.0234	TRUE	1	3	0	3	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	NCOR2--UBC	1	1	NCOR2	2329	chr12:125020111:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	5	71	0.29	0.03	0.0117	0.0117	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.03	0.29	0.0234	TRUE	48	117	12	14	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	PRKDC--MCM4	1	1	PRKDC	23220	chr8:48824970:-	MCM4	101362	chr8:48887294:+	ONLY_REF_SPLICE	NO	180	585	0.01	0	0.0117	0.0117	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[2],PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	RP11-390F4.6--GLDC	1	1	RP11-390F4.6	1130	chr9:6646085:+	GLDC	8260	chr9:6620319:-	ONLY_REF_SPLICE	NO	92	117	0.02	0.02	0.0117	0.0117	LOCAL_INVERSION:+:-:[306],RP11-390F4.6->chr9:6645956-6670635:+,GLDC->chr9:6532464-6645650:-,glycine_decarboxylase	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.02	0.02	0.0234	TRUE	0	0	0	1	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	SPIRE1--AFG3L2	1	1	SPIRE1	9453	chr18:12535475:-	AFG3L2	50342	chr18:12329782:-	ONLY_REF_SPLICE	YES	76	298	0.03	0.01	0.0117	0.0117	NEIGHBORS[69198],SPIRE1->chr18:12446511-12658133:-,spire_type_actin_nucleation_factor_1,AFG3L2->AFG3_like_matrix_AAA_peptidase_subunit_2,chr18:12328943-12377313:-	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000629
IOMMLEE_CENTRAL_NERVOUS_SYSTEM	ZFAND6--MTHFS	1	1	ZFAND6	1242	chr15:80352151:+	MTHFS	23938	chr15:80137784:-	ONLY_REF_SPLICE	YES	229	188	0.01	0.01	0.0117	0.0117	GTEx_FI:{Blood=[count:2=pct:1.1]},ZFAND6->chr15:80351910-80430735:+,zinc_finger_AN1-type_containing_6,MTHFS->5,10-methenyltetrahydrofolate_synthetase_(5-formyltetrahydrofolate_cyclo-ligase),chr15:80125927-80189721:-	IOMMLEE_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0234	FALSE	1	2	0	3	0	FALSE	ACH-000629
TE617T_SOFT_TISSUE	TIMM23B--LINC00843	79	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7635	0.2029	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TE617T_SOFT_TISSUE	0.99	1	0.9664	TRUE	508	994	45	981	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-TA--MT-TC	61	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5895	0.0193	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE617T_SOFT_TISSUE	1	1	0.6088	FALSE	462	80	0	856	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	TIMM23--RP11-464F9.1	50	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	230	3	0.19	0.95	0.4832	0.0387	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TE617T_SOFT_TISSUE	0.19	0.95	0.5219	TRUE	519	3926	326	965	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-ND6--MT-TE	38	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3672	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE617T_SOFT_TISSUE	1	1	0.3672	FALSE	499	1288	110	792	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-ND6--MT-TE	31	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.2996	0.145	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE617T_SOFT_TISSUE	0.94	1	0.4446	FALSE	499	1288	110	792	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	C15orf57--CBX3	20	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	64	28	0.33	0.53	0.1933	0.116	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TE617T_SOFT_TISSUE	0.33	0.53	0.3093	TRUE	267	562	48	632	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-ND6--MT-TE	22	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2126	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE617T_SOFT_TISSUE	1	1	0.2126	FALSE	499	1288	110	792	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-ND6--MT-TE	7	19	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0676	0.1836	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE617T_SOFT_TISSUE	0.9	1	0.2512	FALSE	499	1288	110	792	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MIPEPP3--ABHD12	11	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1063	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	TE617T_SOFT_TISSUE	1	1	0.1063	TRUE	64	202	9	44	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-CO2--MT-CO1	8	7	MT-CO2	1249	chrM:7834:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	14	18443	0.52	0	0.0773	0.0676	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE617T_SOFT_TISSUE	0	0.52	0.1449	FALSE	36	10	0	27	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-ND6--MT-TE	6	15	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.058	0.145	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE617T_SOFT_TISSUE	0.88	1	0.203	FALSE	499	1288	110	792	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-ND6--MT-TE	5	18	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.0483	0.174	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE617T_SOFT_TISSUE	0.85	1	0.2223	FALSE	499	1288	110	792	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-TA--MT-TC	7	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0676	0.0193	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE617T_SOFT_TISSUE	1	1	0.0869	FALSE	462	80	0	856	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-CO2--MT-CO1	5	9	MT-CO2	1282	chrM:7867:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	14	14633	0.5	0	0.0483	0.087	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE617T_SOFT_TISSUE	0	0.5	0.1353	FALSE	36	10	0	27	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-CO2--MT-CO1	4	13	MT-CO2	1489	chrM:8074:+	MT-CO1	5621	chrM:6840:+	INCL_NON_REF_SPLICE	YES	6	7379	0.74	0	0.0387	0.1256	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE617T_SOFT_TISSUE	0	0.74	0.1643	FALSE	36	10	0	27	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-CO2--MT-CO1	4	13	MT-CO2	1493	chrM:8078:+	MT-CO1	5625	chrM:6844:+	INCL_NON_REF_SPLICE	YES	6	7185	0.74	0	0.0387	0.1256	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE617T_SOFT_TISSUE	0	0.74	0.1643	FALSE	36	10	0	27	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-CO2--MT-CO1	3	17	MT-CO2	1381	chrM:7966:+	MT-CO1	5215	chrM:6434:+	INCL_NON_REF_SPLICE	YES	14	15225	0.59	0	0.029	0.1643	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE617T_SOFT_TISSUE	0	0.59	0.1933	FALSE	36	10	0	27	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	CALM3--MT-ND4L	7	0	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0676	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE617T_SOFT_TISSUE	1	1	0.0676	FALSE	1	1	0	107	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-CO2--MT-CO1	5	6	MT-CO2	1278	chrM:7863:+	MT-CO1	5338	chrM:6557:+	INCL_NON_REF_SPLICE	YES	14	19046	0.44	0	0.0483	0.058	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE617T_SOFT_TISSUE	0	0.44	0.1063	FALSE	36	10	0	27	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	GPR126--VTA1	5	5	GPR126	2987	chr6:142630781:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	YES	1123	322	0.01	0.03	0.0483	0.0483	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	TE617T_SOFT_TISSUE	0.01	0.03	0.0966	FALSE	0	2	0	15	1	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-ND6--MT-TE	3	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.029	0.1256	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE617T_SOFT_TISSUE	0.89	1	0.1546	FALSE	499	1288	110	792	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	RP11-123O10.4--GRIP1	6	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.058	0.0097	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TE617T_SOFT_TISSUE	1	1	0.0677	FALSE	416	2512	207	587	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	RP11-680G10.1--GSE1	5	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	33	1	0.17	0.0483	0.0193	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TE617T_SOFT_TISSUE	0.17	1	0.0676	TRUE	458	1351	185	561	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-CO2--MT-CO1	5	1	MT-CO2	1366	chrM:7951:+	MT-CO1	5970	chrM:7189:+	INCL_NON_REF_SPLICE	YES	13	259	0.32	0.02	0.0483	0.0097	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE617T_SOFT_TISSUE	0.02	0.32	0.058	FALSE	36	10	0	27	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-CO2--MT-CO1	3	8	MT-CO2	1295	chrM:7880:+	MT-CO1	5184	chrM:6403:+	INCL_NON_REF_SPLICE	YES	13	14450	0.46	0	0.029	0.0773	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE617T_SOFT_TISSUE	0	0.46	0.1063	FALSE	36	10	0	27	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-ND6--MT-TE	3	8	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.029	0.0773	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE617T_SOFT_TISSUE	0.92	1	0.1063	FALSE	499	1288	110	792	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-CO2--MT-CO1	3	7	MT-CO2	1256	chrM:7841:+	MT-CO1	5313	chrM:6532:+	INCL_NON_REF_SPLICE	YES	14	17106	0.42	0	0.029	0.0676	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE617T_SOFT_TISSUE	0	0.42	0.0966	FALSE	36	10	0	27	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE617T_SOFT_TISSUE	1	1	0.0387	FALSE	499	1288	110	792	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	NASP--C17orf62	4	0	NASP	1360	chr1:46049877:+	C17orf62	29353	chr17:80403836:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0387	0	NASP->chr1:46049518-46084566:+,nuclear_autoantigenic_sperm_protein,C17orf62->chr17:80400465-80408705:-,chromosome_17_open_reading_frame_62	TE617T_SOFT_TISSUE	1	1	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	TE617T_SOFT_TISSUE	1	1	0.0387	TRUE	22	156	2	142	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0.0193	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE617T_SOFT_TISSUE	1	1	0.0483	FALSE	515	4851	409	746	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	CALCRL--AC007319.1	3	1	CALCRL	1422	chr2:188312766:-	AC007319.1	29627	chr2:188411805:+	ONLY_REF_SPLICE	YES	776	5	0.01	0.44	0.029	0.0097	CALCRL->calcitonin_receptor_like_receptor,chr2:188207856-188313187:-,AC007319.1->chr2:187867947-188419390:+	TE617T_SOFT_TISSUE	0.01	0.44	0.0387	FALSE	0	0	0	1	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	DPYD--MIR137HG	3	1	DPYD	2277	chr1:98348820:-	MIR137HG	40342	chr1:98460556:-	ONLY_REF_SPLICE	YES	351	3	0.01	0.57	0.029	0.0097	LOCAL_REARRANGEMENT:-:[66951],DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,MIR137HG->MIR137_host_gene,chr1:98453556-98515419:-	TE617T_SOFT_TISSUE	0.01	0.57	0.0387	FALSE	0	1	0	2	1	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-CO2--MT-CO1	3	0	MT-CO2	1240	chrM:7825:+	MT-CO1	5908	chrM:7127:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE617T_SOFT_TISSUE	1	1	0.029	FALSE	36	10	0	27	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE617T_SOFT_TISSUE	1	1	0.029	FALSE	499	1288	110	792	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE617T_SOFT_TISSUE	1	1	0.029	FALSE	462	80	0	856	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	PFAS--PDIA6	3	0	PFAS	15450	chr17:8172410:+	PDIA6	38360	chr2:10925153:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	PFAS->chr17:8150936-8173809:+,phosphoribosylformylglycinamidine_synthase,PDIA6->chr2:10923517-10978103:-,protein_disulfide_isomerase_family_A_member_6	TE617T_SOFT_TISSUE	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0193	0.0193	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE617T_SOFT_TISSUE	1	1	0.0386	FALSE	407	2205	196	549	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	BMPR1B--PDLIM5	2	1	BMPR1B	1101	chr4:95679219:+	PDLIM5	46461	chr4:95539155:+	ONLY_REF_SPLICE	YES	3	176	0.5	0.02	0.0193	0.0097	GTEx_FI:{Muscle=[count:3=pct:1.3]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:+:[89742],BMPR1B->bone_morphogenetic_protein_receptor_type_1B,chr4:95679119-96079599:+,PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+	TE617T_SOFT_TISSUE	0.02	0.5	0.029	TRUE	0	1	0	2	1	FALSE	ACH-000051
TE617T_SOFT_TISSUE	DPYD--MIR137HG	2	1	DPYD	1166	chr1:98386440:-	MIR137HG	40342	chr1:98460556:-	ONLY_REF_SPLICE	YES	101	3	0.03	0.5	0.0193	0.0097	LOCAL_REARRANGEMENT:-:[66951],DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,MIR137HG->MIR137_host_gene,chr1:98453556-98515419:-	TE617T_SOFT_TISSUE	0.03	0.5	0.029	TRUE	0	0	0	2	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	APLP1--SAR1A	2	0	APLP1	10437	chr19:36369010:+	SAR1A	19993	chr10:71920825:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	APLP1->amyloid_beta_precursor_like_protein_1,chr19:36358801-36370693:+,SAR1A->chr10:71907045-71930279:-,secretion_associated_Ras_related_GTPase_1A	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	ARL10--ZNF451	2	0	ARL10	3290	chr5:175795985:+	ZNF451	51404	chr6:57025882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ARL10->ADP_ribosylation_factor_like_GTPase_10,chr5:175792471-175828866:+,ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	CHM--CCAR1	2	0	CHM	2383	chrX:85282495:-	CCAR1	39266	chr10:70516030:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	CHM->CHM,_Rab_escort_protein_1,chrX:85116185-85302566:-,CCAR1->cell_division_cycle_and_apoptosis_regulator_1,chr10:70480769-70552134:+	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	CTNNA3--N4BP2L2	2	0	CTNNA3	9334	chr10:68940075:-	N4BP2L2	43576	chr13:33096407:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	CTNNA3->catenin_alpha_3,chr10:67672276-69455927:-,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	FNDC3B--CLEC2D	2	0	FNDC3B	1144	chr3:171757561:+	CLEC2D	52868	chr12:9833519:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,CLEC2D->C-type_lectin_domain_family_2_member_D,chr12:9817565-9848413:+	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	FUS--RANBP1	2	0	FUS	1118	chr16:31191548:+	RANBP1	17603	chr22:20106536:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+,RANBP1->RAN_binding_protein_1,chr22:20103461-20114878:+	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	INPP4A--CCNE1	2	0	INPP4A	4000	chr2:99137194:+	CCNE1	41892	chr19:30303885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	INPP4A->chr2:99061317-99210853:+,inositol_polyphosphate-4-phosphatase_type_I_A,CCNE1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:30302805-30315215:+,cyclin_E1	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	IPO7--HNRNPUL1	2	0	IPO7	1226	chr11:9406394:+	HNRNPUL1	35059	chr19:41774128:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	IPO7->chr11:9406169-9469673:+,importin_7,HNRNPUL1->chr19:41768401-41813503:+,heterogeneous_nuclear_ribonucleoprotein_U_like_1	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	KIAA1191--MGAT1	2	0	KIAA1191	1367	chr5:175788605:-	MGAT1	23148	chr5:180220097:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	KIAA1191->KIAA1191,chr5:175773064-175788971:-,MGAT1->chr5:180217541-180242652:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,2-N-acetylglucosaminyltransferase	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	METTL23--MCM3	2	0	METTL23	2633	chr17:74725876:+	MCM3	11562	chr6:52144397:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	METTL23->chr17:74722912-74730018:+,methyltransferase_like_23,MCM3->chr6:52128807-52149679:-,minichromosome_maintenance_complex_component_3	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	MXD4--AC147651.3	2	0	MXD4	1570	chr4:2263452:-	AC147651.3	19095	chr7:563717:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	MXD4->MAX_dimerization_protein_4,chr4:2249159-2264021:-,AC147651.3->chr7:560028-564869:+	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	PHIP--NADK2	2	0	PHIP	1789	chr6:79787165:-	NADK2	45865	chr5:36227667:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	PHIP->Oncogene{Bushman},chr6:79645584-79787953:-,pleckstrin_homology_domain_interacting_protein,NADK2->NAD_kinase_2,_mitochondrial,chr5:36192694-36242381:-	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	PRCP--MIDN	2	0	PRCP	18059	chr11:82549429:-	MIDN	26463	chr19:1251561:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	PRCP->chr11:82534544-82681626:-,prolylcarboxypeptidase,MIDN->chr19:1248552-1259142:+,midnolin	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	RAB40C--AXIN1	2	0	RAB40C	2077	chr16:640433:+	AXIN1	20482	chr16:348251:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+,AXIN1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},axin_1,chr16:337440-402673:-	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	RDH10--PABPC1	2	0	RDH10	3685	chr8:74209664:+	PABPC1	20957	chr8:101721451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	RDH10->chr8:74206847-74237516:+,retinol_dehydrogenase_10_(all-trans),PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	RPSAP52--HMGA2	2	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	TE617T_SOFT_TISSUE	1	1	0.0193	FALSE	0	59	0	125	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	SESTD1--ZMYM2	2	0	SESTD1	7261	chr2:180036847:-	ZMYM2	45830	chr13:20601343:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	SESTD1->SEC14_and_spectrin_domain_containing_1,chr2:179966419-180129517:-,ZMYM2->Oncogene{Bushman},chr13:20532810-20665968:+,zinc_finger_MYM-type_containing_2	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	SLC7A1--RAB11FIP3	2	0	SLC7A1	7159	chr13:30104675:-	RAB11FIP3	37590	chr16:568943:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1,RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	STK36--PIP4K2C	2	0	STK36	2931	chr2:219538679:+	PIP4K2C	29628	chr12:57992848:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	STK36->chr2:219536749-219567439:+,serine/threonine_kinase_36,PIP4K2C->chr12:57984957-57997198:+,phosphatidylinositol-5-phosphate_4-kinase_type_2_gamma	TE617T_SOFT_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000051
TE617T_SOFT_TISSUE	NXN--YWHAE	1	2	NXN	1452	chr17:882559:-	YWHAE	32561	chr17:1248793:-	ONLY_REF_SPLICE	NO	27	936	0.1	0	0.0097	0.0193	NXN->chr17:702553-883010:-,nucleoredoxin,YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon	TE617T_SOFT_TISSUE	0	0.1	0.029	FALSE	0	0	0	1	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0097	0.0193	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE617T_SOFT_TISSUE	1	1	0.029	FALSE	192	492	57	212	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	C1orf21--ACBD6	1	1	C1orf21	3624	chr1:184476816:+	ACBD6	29922	chr1:180399397:-	ONLY_REF_SPLICE	YES	9	100	0.18	0.02	0.0097	0.0097	C1orf21->chr1:184356192-184598154:+,chromosome_1_open_reading_frame_21,ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-	TE617T_SOFT_TISSUE	0.02	0.18	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	CALCRL--ITGAV	1	1	CALCRL	12300	chr2:188243667:-	ITGAV	27112	chr2:187466748:+	ONLY_REF_SPLICE	YES	748	503	0	0	0.0097	0.0097	CALCRL->calcitonin_receptor_like_receptor,chr2:188207856-188313187:-,ITGAV->chr2:187454792-187545628:+,integrin_subunit_alpha_V	TE617T_SOFT_TISSUE	0	0	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	CAPZA2--EXOC4	1	1	CAPZA2	3371	chr7:116502704:+	EXOC4	46007	chr7:133314798:+	ONLY_REF_SPLICE	YES	54	33	0.04	0.06	0.0097	0.0097	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	TE617T_SOFT_TISSUE	0.04	0.06	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	CHMP1A--SEPSECS	1	1	CHMP1A	1264	chr16:89723990:-	SEPSECS	13154	chr4:25160729:-	ONLY_REF_SPLICE	YES	75	11	0.03	0.15	0.0097	0.0097	CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-,SEPSECS->Sep_(O-phosphoserine)_tRNA:Sec_(selenocysteine)_tRNA_synthase,chr4:25121627-25162204:-	TE617T_SOFT_TISSUE	0.03	0.15	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	COL11A1--ORC1	1	1	COL11A1	41011	chr1:103400005:-	ORC1	74741	chr1:52849241:-	ONLY_REF_SPLICE	YES	278	35	0.01	0.05	0.0097	0.0097	COL11A1->Oncogene{Bushman},chr1:103342023-103574052:-,collagen_type_XI_alpha_1,ORC1->chr1:52838501-52870131:-,origin_recognition_complex_subunit_1	TE617T_SOFT_TISSUE	0.01	0.05	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	EIF3H--RAD21	1	1	EIF3H	7051	chr8:117738255:-	RAD21	24431	chr8:117879000:-	ONLY_REF_SPLICE	YES	583	29	0	0.06	0.0097	0.0097	LOCAL_REARRANGEMENT:-:[79010],EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-	TE617T_SOFT_TISSUE	0	0.06	0.0194	FALSE	0	0	0	7	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	EPHA7--MARCKS	1	1	EPHA7	1303	chr6:94128963:-	MARCKS	28193	chr6:114180859:+	ONLY_REF_SPLICE	YES	1391	303	0	0.01	0.0097	0.0097	EPHA7->ArcherDX_panel,EPH_receptor_A7,FoundationOne_panel,Oncogene{Bushman},chr6:93949738-94129265:-,MARCKS->chr6:114178541-114184648:+,myristoylated_alanine_rich_protein_kinase_C_substrate	TE617T_SOFT_TISSUE	0	0.01	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	GPR126--VTA1	1	1	GPR126	8270	chr6:142704980:+	VTA1	44067	chr6:142539635:+	ONLY_REF_SPLICE	YES	956	553	0	0	0.0097	0.0097	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	TE617T_SOFT_TISSUE	0	0	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	RAPGEF2--RXFP1	1	1	RAPGEF2	4266	chr4:160131735:+	RXFP1	46155	chr4:159343422:+	ONLY_REF_SPLICE	NO	393	0	0.01	1	0.0097	0.0097	RAPGEF2->Rap_guanine_nucleotide_exchange_factor_2,chr4:160025330-160281321:+,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	TE617T_SOFT_TISSUE	0.01	1	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	RAPGEF2--RXFP1	1	1	RAPGEF2	3182	chr4:160114408:+	RXFP1	46155	chr4:159343422:+	ONLY_REF_SPLICE	NO	401	0	0	1	0.0097	0.0097	RAPGEF2->Rap_guanine_nucleotide_exchange_factor_2,chr4:160025330-160281321:+,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	TE617T_SOFT_TISSUE	0	1	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0097	0.0097	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TE617T_SOFT_TISSUE	1	1	0.0194	FALSE	93	270	15	244	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	NO	0	71	1	0.03	0.0097	0.0097	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TE617T_SOFT_TISSUE	0.03	1	0.0194	TRUE	465	1949	224	605	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	SASS6--PKN2	1	1	SASS6	12834	chr1:100568511:-	PKN2	23864	chr1:89236035:+	ONLY_REF_SPLICE	NO	23	98	0.08	0.02	0.0097	0.0097	SASS6->SAS-6_centriolar_assembly_protein,chr1:100549119-100598511:-,PKN2->chr1:89149905-89301938:+,protein_kinase_N2	TE617T_SOFT_TISSUE	0.02	0.08	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	SBNO1--UBC	1	1	SBNO1	1143	chr12:123849248:-	UBC	41522	chr12:125398320:-	ONLY_REF_SPLICE	NO	42	123	0.05	0.02	0.0097	0.0097	SBNO1->Oncogene{Bushman},chr12:123773656-123849390:-,strawberry_notch_homolog_1_(Drosophila),UBC->chr12:125396150-125401914:-,ubiquitin_C	TE617T_SOFT_TISSUE	0.02	0.05	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	SCARB1--UBC	1	1	SCARB1	12016	chr12:125296416:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	252	123	0.01	0.02	0.0097	0.0097	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	TE617T_SOFT_TISSUE	0.01	0.02	0.0194	FALSE	1	2	0	2	1	FALSE	ACH-000051
TE617T_SOFT_TISSUE	VTA1--GPR126	1	1	VTA1	1170	chr6:142468536:+	GPR126	23980	chr6:142703088:+	ONLY_REF_SPLICE	YES	297	887	0.01	0	0.0097	0.0097	NEIGHBORS[77165],VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1,GPR126->chr6:142622991-142767403:+	TE617T_SOFT_TISSUE	0	0.01	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000051
TE617T_SOFT_TISSUE	YY1--SLITRK5	1	1	YY1	3789	chr14:100728803:+	SLITRK5	17405	chr13:88327636:+	ONLY_REF_SPLICE	YES	157	5	0.01	0.29	0.0097	0.0097	YY1->YY1_transcription_factor,chr14:100704635-100749129:+,SLITRK5->SLIT_and_NTRK_like_family_member_5,chr13:88324870-88331871:+	TE617T_SOFT_TISSUE	0.01	0.29	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000051
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4857	65	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	223	0	0.96	1	43.1631	0.5776	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.96	1	43.7407	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3382	303	MT-ND4	1180	chrM:10939:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	69	0	0.98	1	30.0551	2.6927	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.98	1	32.7478	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	286	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	1	1	2.5416	0.0533	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	2.5949	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	209	26	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.8573	0.2311	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	2.0884	FALSE	462	80	0	856	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	63	350	MT-ND4	1741	chrM:11500:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	8702	0	0.05	1	0.5599	3.1104	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.05	1	3.6703	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	57	301	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	73	2	0.83	0.99	0.5065	2.6749	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.83	0.99	3.1814	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	70	218	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	11722	0	0.02	1	0.6221	1.9373	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.02	1	2.5594	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	41	310	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	78	0	0.82	1	0.3644	2.7549	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.82	1	3.1193	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	111	9	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.9864	0.08	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.99	1	1.0664	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	23	332	MT-ND4	1362	chrM:11121:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	340	2	0.51	0.99	0.2044	2.9504	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.51	0.99	3.1548	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	95	23	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	73	0	0.62	1	0.8442	0.2044	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.62	1	1.0486	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	31	272	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	30	2	0.91	0.99	0.2755	2.4172	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.91	0.99	2.6927	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	48	187	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	20	2	0.92	0.99	0.4266	1.6618	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.92	0.99	2.0884	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	16	309	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	73	0	0.82	1	0.1422	2.746	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.82	1	2.8882	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	348	MT-ND4	1638	chrM:11397:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	3125	0	0.1	1	0.0533	3.0926	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.1	1	3.1459	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	347	MT-ND4	1524	chrM:11283:+	MT-ND4L	5501	chrM:10592:+	INCL_NON_REF_SPLICE	YES	1139	1	0.24	1	0.0533	3.0837	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.24	1	3.137	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	85	31	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	25	0	0.82	1	0.7554	0.2755	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.82	1	1.0309	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	83	38	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1229	0	0.09	1	0.7376	0.3377	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.09	1	1.0753	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	351	MT-ND4	1735	chrM:11494:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	8177	0	0.04	1	0.0267	3.1193	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.04	1	3.146	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	346	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	869	2	0.29	0.99	0.0355	3.0748	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.29	0.99	3.1103	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	18	289	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	55	0	0.85	1	0.16	2.5683	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.85	1	2.7283	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	340	MT-ND4	1531	chrM:11290:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	1266	2	0.21	0.99	0.0355	3.0215	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.21	0.99	3.057	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	326	MT-ND4	1285	chrM:11044:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	228	0	0.59	1	0.0622	2.8971	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.59	1	2.9593	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	337	MT-ND4	1902	chrM:11661:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	26009	2	0.01	0.99	0.0267	2.9948	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.01	0.99	3.0215	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	301	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	67	2	0.82	0.99	0.1066	2.6749	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.82	0.99	2.7815	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	336	MT-ND4	1542	chrM:11301:+	MT-ND4L	5538	chrM:10629:+	INCL_NON_REF_SPLICE	YES	1374	2	0.2	0.99	0.0267	2.986	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.2	0.99	3.0127	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	17	277	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	48	2	0.86	0.99	0.1511	2.4616	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.86	0.99	2.6127	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	312	MT-ND4	1209	chrM:10968:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	106	1	0.75	1	0.0711	2.7727	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.75	1	2.8438	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	332	MT-ND4	1353	chrM:11112:+	MT-ND4L	5503	chrM:10594:+	INCL_NON_REF_SPLICE	YES	330	2	0.5	0.99	0.0267	2.9504	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.5	0.99	2.9771	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	308	MT-ND4	1209	chrM:10968:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	106	2	0.75	0.99	0.08	2.7371	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.75	0.99	2.8171	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	318	MT-ND4	1299	chrM:11058:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	YES	248	2	0.57	0.99	0.0533	2.826	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.57	0.99	2.8793	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	322	MT-ND4	1263	chrM:11022:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	193	0	0.63	1	0.0444	2.8615	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.63	1	2.9059	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	312	MT-ND4	1205	chrM:10964:+	MT-ND4L	5494	chrM:10585:+	INCL_NON_REF_SPLICE	YES	104	0	0.75	1	0.0622	2.7727	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.75	1	2.8349	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	327	MT-ND4	1299	chrM:11058:+	MT-ND4L	5462	chrM:10553:+	INCL_NON_REF_SPLICE	YES	248	0	0.57	1	0.0267	2.906	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.57	1	2.9327	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	307	MT-ND4	1195	chrM:10954:+	MT-ND4L	5529	chrM:10620:+	INCL_NON_REF_SPLICE	YES	77	2	0.8	0.99	0.0711	2.7282	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.8	0.99	2.7993	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	11	293	MT-ND4	1164	chrM:10923:+	MT-ND4L	5529	chrM:10620:+	INCL_NON_REF_SPLICE	YES	64	2	0.83	0.99	0.0978	2.6038	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.83	0.99	2.7016	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	317	MT-ND4	1197	chrM:10956:+	MT-ND4L	5432	chrM:10523:+	INCL_NON_REF_SPLICE	YES	79	0	0.8	1	0.0444	2.8171	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.8	1	2.8615	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	317	MT-ND4	1222	chrM:10981:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	130	0	0.71	1	0.0444	2.8171	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.71	1	2.8615	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	37	188	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	29	0	0.89	1	0.3288	1.6707	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.89	1	1.9995	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	324	MT-ND4	1334	chrM:11093:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	294	2	0.53	0.99	0.0267	2.8793	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.53	0.99	2.906	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	307	MT-ND4	1220	chrM:10979:+	MT-ND4L	5536	chrM:10627:+	INCL_NON_REF_SPLICE	YES	126	2	0.71	0.99	0.0622	2.7282	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.71	0.99	2.7904	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	314	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	126	2	0.72	0.99	0.0444	2.7905	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.72	0.99	2.8349	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	302	MT-ND4	1180	chrM:10939:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	69	2	0.82	0.99	0.0622	2.6838	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.82	0.99	2.746	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	282	MT-ND4	1144	chrM:10903:+	MT-ND4L	5529	chrM:10620:+	INCL_NON_REF_SPLICE	YES	48	2	0.86	0.99	0.1066	2.5061	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.86	0.99	2.6127	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	310	MT-ND4	1216	chrM:10975:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	119	2	0.73	0.99	0.0355	2.7549	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.73	0.99	2.7904	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	314	MT-ND4	1217	chrM:10976:+	MT-ND4L	5518	chrM:10609:+	INCL_NON_REF_SPLICE	YES	120	2	0.73	0.99	0.0267	2.7905	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.73	0.99	2.8172	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	308	MT-ND4	1190	chrM:10949:+	MT-ND4L	5464	chrM:10555:+	INCL_NON_REF_SPLICE	YES	72	0	0.81	1	0.0355	2.7371	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.81	1	2.7726	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	312	MT-ND4	1209	chrM:10968:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	106	2	0.75	0.99	0.0267	2.7727	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.75	0.99	2.7994	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	307	MT-ND4	1253	chrM:11012:+	MT-ND4L	5545	chrM:10636:+	INCL_NON_REF_SPLICE	YES	189	1	0.62	1	0.0355	2.7282	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.62	1	2.7637	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	309	MT-ND4	1195	chrM:10954:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	77	0	0.8	1	0.0267	2.746	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.8	1	2.7727	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	295	MT-ND4	1164	chrM:10923:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	64	0	0.82	1	0.0533	2.6216	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.82	1	2.6749	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	286	MT-ND4	1149	chrM:10908:+	MT-ND4L	5493	chrM:10584:+	INCL_NON_REF_SPLICE	YES	54	0	0.84	1	0.0711	2.5416	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.84	1	2.6127	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	305	MT-ND4	1187	chrM:10946:+	MT-ND4L	5461	chrM:10552:+	INCL_NON_REF_SPLICE	YES	73	0	0.81	1	0.0267	2.7105	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.81	1	2.7372	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	297	MT-ND4	1168	chrM:10927:+	MT-ND4L	5460	chrM:10551:+	INCL_NON_REF_SPLICE	YES	67	0	0.82	1	0.0444	2.6394	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.82	1	2.6838	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	298	MT-ND4	1170	chrM:10929:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	YES	67	2	0.82	0.99	0.0355	2.6483	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.82	0.99	2.6838	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	272	MT-ND4	1114	chrM:10873:+	MT-ND4L	5509	chrM:10600:+	INCL_NON_REF_SPLICE	YES	30	2	0.9	0.99	0.0889	2.4172	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.9	0.99	2.5061	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	286	MT-ND4	1147	chrM:10906:+	MT-ND4L	5504	chrM:10595:+	INCL_NON_REF_SPLICE	YES	51	2	0.85	0.99	0.0533	2.5416	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.85	0.99	2.5949	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	286	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	54	2	0.84	0.99	0.0444	2.5416	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.84	0.99	2.586	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	262	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	26	2	0.91	0.99	0.0889	2.3283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.91	0.99	2.4172	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	75	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6665	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.6665	FALSE	369	2501	205	193	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	279	MT-ND4	1148	chrM:10907:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	YES	53	1	0.84	1	0.0355	2.4794	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.84	1	2.5149	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	232	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	20	2	0.93	0.99	0.1333	2.0617	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.93	0.99	2.195	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	279	MT-ND4	1125	chrM:10884:+	MT-ND4L	5518	chrM:10609:+	INCL_NON_REF_SPLICE	NO	33	2	0.9	0.99	0.0267	2.4794	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.9	0.99	2.5061	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	72	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6398	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.6398	FALSE	462	80	0	856	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	38	134	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3377	1.1908	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	1.5285	FALSE	369	2501	205	193	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	65	24	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5776	0.2133	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.7909	FALSE	462	80	0	856	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	262	MT-ND4	1103	chrM:10862:+	MT-ND4L	5509	chrM:10600:+	INCL_NON_REF_SPLICE	YES	24	2	0.92	0.99	0.0444	2.3283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.92	0.99	2.3727	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	268	MT-ND4	1108	chrM:10867:+	MT-ND4L	5519	chrM:10610:+	INCL_NON_REF_SPLICE	YES	27	2	0.91	0.99	0.0267	2.3817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.91	0.99	2.4084	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	256	MT-ND4	1471	chrM:11230:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	588	0	0.31	1	0.0444	2.275	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.31	1	2.3194	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	20	195	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	106	0	0.67	1	0.1777	1.7329	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.67	1	1.9106	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	255	MT-ND4	1100	chrM:10859:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	YES	24	1	0.92	1	0.0355	2.2661	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.92	1	2.3016	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	254	MT-ND4	1096	chrM:10855:+	MT-ND4L	5400	chrM:10491:+	INCL_NON_REF_SPLICE	YES	23	0	0.92	1	0.0267	2.2572	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.92	1	2.2839	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	242	MT-ND4	1092	chrM:10851:+	MT-ND4L	5537	chrM:10628:+	INCL_NON_REF_SPLICE	YES	23	2	0.92	0.99	0.0533	2.1506	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.92	0.99	2.2039	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	245	MT-ND4	1285	chrM:11044:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	228	0	0.52	1	0.0444	2.1773	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.52	1	2.2217	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	47	69	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1090	0	0.1	1	0.4177	0.6132	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.1	1	1.0309	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	16	192	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	258	0	0.45	1	0.1422	1.7063	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.45	1	1.8485	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	232	MT-ND4	1195	chrM:10954:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	77	0	0.76	1	0.0533	2.0617	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.76	1	2.115	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	58	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5154	0.1866	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.702	TRUE	508	994	45	981	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	213	MT-ND4	1215	chrM:10974:+	MT-ND4L	5606	chrM:10697:+	INCL_NON_REF_SPLICE	YES	118	0	0.65	1	0.08	1.8929	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.65	1	1.9729	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	225	MT-ND4	1301	chrM:11060:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	248	0	0.48	1	0.0444	1.9995	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.48	1	2.0439	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	49	45	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4355	0.3999	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.8354	FALSE	369	2501	205	193	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	208	MT-ND4	1178	chrM:10937:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	69	0	0.76	1	0.0711	1.8485	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.76	1	1.9196	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	192	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	244	0	0.46	1	0.1066	1.7063	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.46	1	1.8129	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	60	0	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5332	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.5332	FALSE	51	280	19	36	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	214	MT-ND4	1514	chrM:11273:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	1006	0	0.18	1	0.0533	1.9018	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.18	1	1.9551	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	181	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	30	0	0.87	1	0.1244	1.6085	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.87	1	1.7329	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	205	MT-ND4	1289	chrM:11048:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	237	0	0.47	1	0.0622	1.8218	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.47	1	1.884	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	213	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	242	0	0.47	1	0.0267	1.8929	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.47	1	1.9196	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	208	MT-ND4	1289	chrM:11048:+	MT-ND4L	5610	chrM:10701:+	INCL_NON_REF_SPLICE	YES	237	0	0.47	1	0.0267	1.8485	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.47	1	1.8752	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	21	135	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	99	1	0.61	0.99	0.1866	1.1997	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.61	0.99	1.3863	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	159	MT-ND4	1062	chrM:10821:+	MT-ND4L	5516	chrM:10607:+	INCL_NON_REF_SPLICE	YES	19	2	0.9	0.99	0.1244	1.413	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.9	0.99	1.5374	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	187	MT-ND4	1164	chrM:10923:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	64	0	0.75	1	0.0622	1.6618	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.75	1	1.724	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	202	MT-ND4	1199	chrM:10958:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	91	0	0.69	1	0.0267	1.7951	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.69	1	1.8218	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	196	MT-ND4	1279	chrM:11038:+	MT-ND4L	5615	chrM:10706:+	INCL_NON_REF_SPLICE	YES	223	0	0.47	1	0.0267	1.7418	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.47	1	1.7685	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	43	34	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	106	0	0.42	1	0.3821	0.3022	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.42	1	0.6843	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	188	MT-ND4	1226	chrM:10985:+	MT-ND4L	5617	chrM:10708:+	INCL_NON_REF_SPLICE	YES	136	0	0.59	1	0.0355	1.6707	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.59	1	1.7062	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	17	134	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	64	0	0.7	1	0.1511	1.1908	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.7	1	1.3419	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	185	MT-ND4	1112	chrM:10871:+	MT-ND4L	5606	chrM:10697:+	INCL_NON_REF_SPLICE	YES	29	0	0.87	1	0.0267	1.6441	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.87	1	1.6708	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	165	MT-ND4	1131	chrM:10890:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	42	0	0.8	1	0.0622	1.4663	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.8	1	1.5285	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	33	60	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	26	0	0.78	1	0.2933	0.5332	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.78	1	0.8265	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	130	MT-ND4	1231	chrM:10990:+	MT-ND4L	5632	chrM:10723:+	INCL_NON_REF_SPLICE	YES	143	1	0.5	0.99	0.1333	1.1553	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.5	0.99	1.2886	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	156	MT-ND4	1220	chrM:10979:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	126	0	0.57	1	0.0711	1.3863	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.57	1	1.4574	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	156	MT-ND4	1170	chrM:10929:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	67	0	0.71	1	0.0711	1.3863	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.71	1	1.4574	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	13	127	MT-ND4	1144	chrM:10903:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	48	0	0.74	1	0.1155	1.1286	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.74	1	1.2441	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	166	MT-ND4	1503	chrM:11262:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	869	0	0.16	1	0.0267	1.4752	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.16	1	1.5019	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	29	62	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	69	0	0.57	1	0.2577	0.551	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.57	1	0.8087	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	150	MT-ND4	1304	chrM:11063:+	MT-ND4L	5626	chrM:10717:+	INCL_NON_REF_SPLICE	YES	255	0	0.38	1	0.0444	1.333	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.38	1	1.3774	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	42	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3732	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.3732	FALSE	369	2501	205	193	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	137	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	44	0	0.77	1	0.0622	1.2175	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.77	1	1.2797	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	148	MT-ND4	1578	chrM:11337:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	1847	1	0.08	0.99	0.0355	1.3152	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.08	0.99	1.3507	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	32	34	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	119	0	0.36	1	0.2844	0.3022	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.36	1	0.5866	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	141	MT-ND4	1314	chrM:11073:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	264	1	0.35	0.99	0.0355	1.253	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.35	0.99	1.2885	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	139	MT-ND4	1224	chrM:10983:+	MT-ND4L	5627	chrM:10718:+	INCL_NON_REF_SPLICE	YES	134	0	0.52	1	0.0355	1.2353	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.52	1	1.2708	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	20	70	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1777	0.6221	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.7998	FALSE	369	2501	205	193	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	12	100	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1066	0.8887	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.9953	FALSE	369	2501	205	193	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	107	MT-ND4	1112	chrM:10871:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	29	1	0.8	0.99	0.0711	0.9509	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.8	0.99	1.022	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	34	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3022	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.3022	FALSE	351	233	23	137	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	19	60	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	28	0	0.74	1	0.1688	0.5332	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.74	1	0.702	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	22	47	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1955	0.4177	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.6132	FALSE	369	2501	205	193	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	96	MT-ND4	1201	chrM:10960:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	99	0	0.51	1	0.08	0.8531	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.51	1	0.9331	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	33	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2933	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.2933	FALSE	369	2501	205	193	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	102	MT-ND4	1519	chrM:11278:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	YES	1090	0	0.09	1	0.0622	0.9065	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.9687	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	118	MT-ND4	1107	chrM:10866:+	MT-ND4L	5633	chrM:10724:+	INCL_NON_REF_SPLICE	YES	27	1	0.82	0.99	0.0267	1.0486	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.82	0.99	1.0753	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	24	33	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	64	0	0.47	1	0.2133	0.2933	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.47	1	0.5066	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	21	45	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	3	0	0.96	1	0.1866	0.3999	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.5865	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	22	38	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1266	0	0.05	1	0.1955	0.3377	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.05	1	0.5332	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	93	MT-ND4	1209	chrM:10968:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	NO	106	0	0.49	1	0.0711	0.8265	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.49	1	0.8976	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	30	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2666	0.0444	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.311	FALSE	416	2512	207	587	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	28	10	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	99	0	0.28	1	0.2488	0.0889	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.28	1	0.3377	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	63	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	77	0	0.5	1	0.1244	0.5599	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.5	1	0.6843	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	13	62	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	64	0	0.54	1	0.1155	0.551	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.54	1	0.6665	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	11	69	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	10871	0	0.01	1	0.0978	0.6132	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.711	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	98	MT-ND4	1269	chrM:11028:+	MT-ND4L	5644	chrM:10735:+	INCL_NON_REF_SPLICE	YES	219	0	0.32	1	0.0267	0.8709	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.32	1	0.8976	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	26	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	148	4	0.17	0.88	0.2311	0.0355	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BICR56_UPPER_AERODIGESTIVE_TRACT	0.17	0.88	0.2666	TRUE	519	3926	326	965	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	95	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	23	1	0.81	0.99	0.0267	0.8442	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.81	0.99	0.8709	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	83	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	19	0	0.82	1	0.0533	0.7376	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.82	1	0.7909	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	24	10	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	237	0	0.13	1	0.2133	0.0889	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.13	1	0.3022	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	92	MT-ND4	1489	chrM:11248:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	YES	732	0	0.11	1	0.0267	0.8176	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.8443	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	26	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2311	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.2311	FALSE	369	2501	205	193	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	91	MT-ND4	1039	chrM:10798:+	MT-ND4L	5496	chrM:10587:+	INCL_NON_REF_SPLICE	YES	18	1	0.84	0.99	0.0267	0.8087	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.84	0.99	0.8354	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	41	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	71	0	0.44	1	0.1333	0.3644	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.44	1	0.4977	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	73	MT-ND4	1125	chrM:10884:+	MT-ND4L	5651	chrM:10742:+	INCL_NON_REF_SPLICE	YES	33	0	0.71	1	0.0622	0.6487	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.71	1	0.7109	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	16	34	MT-ND4	1192	chrM:10951:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	73	0	0.41	1	0.1422	0.3022	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.41	1	0.4444	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	69	MT-ND4	1471	chrM:11230:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	588	0	0.11	1	0.0622	0.6132	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.6754	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	16	31	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	19	0	0.71	1	0.1422	0.2755	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.71	1	0.4177	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	63	MT-ND4	1209	chrM:10968:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	106	0	0.4	1	0.0711	0.5599	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.631	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	9	58	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	26	0	0.72	1	0.08	0.5154	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.72	1	0.5954	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	14	36	MT-ND6	1096	chrM:14578:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	4	0	0.93	1	0.1244	0.3199	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.93	1	0.4443	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	20	10	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	237	0	0.11	1	0.1777	0.0889	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.2666	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	20	10	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	77	0	0.28	1	0.1777	0.0889	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.28	1	0.2666	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	52	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	4	1	0.94	0.98	0.08	0.4621	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.94	0.98	0.5421	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	38	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	650	0	0.07	1	0.1066	0.3377	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.4443	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	13	34	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	24	0	0.66	1	0.1155	0.3022	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.66	1	0.4177	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	72	MT-ND4	1073	chrM:10832:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	20	0	0.79	1	0.0267	0.6398	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.79	1	0.6665	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	11	39	MT-ND4	2122	chrM:11881:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	18949	0	0	1	0.0978	0.3466	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0	1	0.4444	FALSE	315	784	43	302	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	65	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	237	0	0.23	1	0.0355	0.5776	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.23	1	0.6131	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	11	36	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	228	0	0.17	1	0.0978	0.3199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.17	1	0.4177	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	10	40	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	15	0	0.77	1	0.0889	0.3555	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.77	1	0.4444	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	67	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	4	0	0.95	1	0.0267	0.5954	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.6221	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	60	MT-ND6	1273	chrM:14401:-	MT-TE	4552	chrM:14716:-	INCL_NON_REF_SPLICE	YES	16	0	0.8	1	0.0355	0.5332	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.5687	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	63	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	14	0	0.82	1	0.0267	0.5599	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.82	1	0.5866	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	11	30	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0978	0.2666	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.3644	FALSE	462	80	0	856	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	52	MT-ND6	1084	chrM:14590:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.0444	0.4621	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.5065	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	60	MT-ND6	1255	chrM:14419:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	17	0	0.79	1	0.0267	0.5332	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.79	1	0.5599	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	3	60	MT-TC	1065	chrM:5762:-	MT-TY	4067	chrM:5891:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0267	0.5332	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.5599	FALSE	51	280	19	36	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	59	MT-ND4	1144	chrM:10903:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	48	0	0.56	1	0.0267	0.5243	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.56	1	0.551	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	59	MT-ND6	1162	chrM:14512:-	MT-TE	4552	chrM:14716:-	INCL_NON_REF_SPLICE	YES	23	0	0.73	1	0.0267	0.5243	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.73	1	0.551	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	4	55	MT-TC	1061	chrM:5766:-	MT-TY	4075	chrM:5883:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.4888	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.5243	FALSE	51	280	19	36	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	38	MT-ND4	1711	chrM:11470:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6689	0	0.01	1	0.0711	0.3377	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.4088	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	17	2	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	18	0	0.51	1	0.1511	0.0178	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.51	1	0.1689	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	8	37	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.0711	0.3288	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.92	1	0.3999	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	ATF6B--FKBPL	13	16	ATF6B	2151	chr6:32094880:-	FKBPL	14766	chr6:32097631:-	ONLY_REF_SPLICE	YES	125	24	0.19	0.55	0.1155	0.1422	LOCAL_REARRANGEMENT:-:[454],ATF6B->activating_transcription_factor_6_beta,chr6:32065953-32096030:-,FKBPL->FK506_binding_protein_like,chr6:32096484-32098068:-	BICR56_UPPER_AERODIGESTIVE_TRACT	0.19	0.55	0.2577	TRUE	0	0	0	1	0	TRUE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	52	MT-ND4	1131	chrM:10890:+	MT-ND4L	5657	chrM:10748:+	INCL_NON_REF_SPLICE	YES	42	0	0.57	1	0.0355	0.4621	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.57	1	0.4976	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	17	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1511	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.1511	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	11	24	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0978	0.2133	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.3111	FALSE	462	80	0	856	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	54	MT-ND4	1024	chrM:10783:+	MT-ND4L	5400	chrM:10491:+	INCL_NON_REF_SPLICE	YES	4	0	0.93	1	0.0267	0.4799	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.93	1	0.5066	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	36	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	223	0	0.16	1	0.0622	0.3199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.16	1	0.3821	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	8	32	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	25	0	0.62	1	0.0711	0.2844	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.62	1	0.3555	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	15	2	MT-ND3	1222	chrM:10280:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1659	21	0.01	0.45	0.1333	0.0178	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR56_UPPER_AERODIGESTIVE_TRACT	0.01	0.45	0.1511	FALSE	351	233	23	137	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	30	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	48	0	0.44	1	0.0622	0.2666	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.44	1	0.3288	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	36	MT-ND4	1303	chrM:11062:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	253	0	0.14	1	0.0444	0.3199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.14	1	0.3643	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	40	MT-ND6	1417	chrM:14257:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	5	0	0.9	1	0.0355	0.3555	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.9	1	0.391	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	14	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1244	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.1244	FALSE	51	280	19	36	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	35	MT-ND4	1248	chrM:11007:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	184	0	0.18	1	0.0444	0.311	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.18	1	0.3554	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	8	23	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0711	0.2044	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.2755	FALSE	462	80	0	856	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	13	2	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	18	0	0.45	1	0.1155	0.0178	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.45	1	0.1333	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	38	MT-ND6	1199	chrM:14475:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	27	0	0.61	1	0.0355	0.3377	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.61	1	0.3732	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	13	0	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1155	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.1155	FALSE	13	214	14	42	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	38	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10871	0	0	1	0.0267	0.3377	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0	1	0.3644	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	30	MT-ND4	1114	chrM:10873:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	30	0	0.54	1	0.0444	0.2666	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.54	1	0.311	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	9	13	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	8	0	0.73	1	0.08	0.1155	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.73	1	0.1955	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	12	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	23	0	0.48	1	0.08	0.1066	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.48	1	0.1866	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1066	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.1066	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	36	MT-ND4	1311	chrM:11070:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	264	0	0.13	1	0.0267	0.3199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.13	1	0.3466	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	6	24	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0.2133	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.2666	FALSE	462	80	0	856	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	12	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1066	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.1066	FALSE	369	2501	205	193	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	12	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1066	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.1066	FALSE	13	214	14	42	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	12	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1066	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.1066	FALSE	51	280	19	36	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	34	MT-ND6	1342	chrM:14332:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	22	0	0.63	1	0.0267	0.3022	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.63	1	0.3289	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	33	MT-ND4	1170	chrM:10929:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	67	0	0.35	1	0.0267	0.2933	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.35	1	0.32	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	24	MT-ND4	1287	chrM:11046:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	230	0	0.11	1	0.0444	0.2133	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.2577	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	11	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0978	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0978	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	26	MT-ND4	1192	chrM:10951:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	73	0	0.29	1	0.0355	0.2311	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.29	1	0.2666	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	29	MT-ND4	1818	chrM:11577:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	14755	0	0	1	0.0267	0.2577	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0	1	0.2844	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	25	MT-ND4	1170	chrM:10929:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	67	0	0.3	1	0.0355	0.2222	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.3	1	0.2577	FALSE	344	826	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	10	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0889	0.0089	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0978	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	10	1	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0889	0.0089	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0978	FALSE	369	2501	205	193	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	10	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	14	1	0.44	0.0889	0.0089	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BICR56_UPPER_AERODIGESTIVE_TRACT	0.44	1	0.0978	FALSE	292	1546	117	613	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	24	MT-TA	1054	chrM:5602:-	MT-TC	4006	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.2133	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.2488	FALSE	462	80	0	856	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	10	0	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0889	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0889	FALSE	13	214	14	42	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	10	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	130	0	0.12	1	0.0622	0.0889	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.12	1	0.1511	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	21	MT-ND4	1016	chrM:10775:+	MT-ND4L	5463	chrM:10554:+	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0355	0.1866	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.93	1	0.2221	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	17	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	20	0	0.52	1	0.0444	0.1511	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.52	1	0.1955	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	24	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0267	0.2133	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.24	FALSE	462	80	0	856	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	9	0	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.08	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.08	FALSE	13	214	14	42	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	FAM211A--MT-CO3	7	5	FAM211A	8450	chr17:16344949:-	MT-CO3	11714	chrM:9412:+	INCL_NON_REF_SPLICE	YES	0	17985	1	0	0.0622	0.0444	FAM211A->chr17:16344891-16395467:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BICR56_UPPER_AERODIGESTIVE_TRACT	0	1	0.1066	FALSE	0	0	0	7	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	8	1	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0711	0.0089	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.08	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	20	MT-ND6	1149	chrM:14525:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	21	0	0.52	1	0.0267	0.1777	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.52	1	0.2044	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	8	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0711	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0711	FALSE	369	2501	205	193	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TI--MT-ND1	8	0	MT-TI	1010	chrM:4272:+	MT-ND1	4946	chrM:4183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0711	0	LOCAL_REARRANGEMENT:+:[1],MT-TI->chrM:4263-4331:+,mitochondrially_encoded_tRNA_isoleucine,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0711	FALSE	57	10	0	4	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	16	MT-ND6	1198	chrM:14476:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	27	0	0.41	1	0.0267	0.1422	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.41	1	0.1689	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	6	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	10	1	0.5	0.0533	0.0355	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BICR56_UPPER_AERODIGESTIVE_TRACT	0.5	1	0.0888	TRUE	465	1949	224	605	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	11	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0355	0.0978	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.1333	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	10	MT-ND4	1338	chrM:11097:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	302	0	0.04	1	0.0355	0.0889	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.04	1	0.1244	FALSE	344	827	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	6	MT-ND4	1004	chrM:10763:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0444	0.0533	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0977	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	1	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	19	0	0.27	1	0.0533	0.0089	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.27	1	0.0622	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0533	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1002	chrM:14672:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0533	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	2	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	18	1	0.28	0.88	0.0444	0.0178	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.28	0.88	0.0622	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	32	1	0.16	0.0444	0.0089	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BICR56_UPPER_AERODIGESTIVE_TRACT	0.16	1	0.0533	FALSE	25	145	6	90	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	5	0	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0444	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0444	FALSE	13	214	14	42	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0.0267	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0622	FALSE	515	4851	409	746	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	4	2	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	83	21	0.07	0.22	0.0355	0.0178	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR56_UPPER_AERODIGESTIVE_TRACT	0.07	0.22	0.0533	FALSE	351	233	23	137	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	3	6	MT-ND3	1283	chrM:10341:+	MT-ATP8	4411	chrM:8430:+	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.0267	0.0533	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR56_UPPER_AERODIGESTIVE_TRACT	0.64	1	0.08	FALSE	351	233	23	137	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TW--MT-ND2	4	2	MT-TW	1004	chrM:5515:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	96	1	0.06	0.0355	0.0178	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	BICR56_UPPER_AERODIGESTIVE_TRACT	0.06	1	0.0533	FALSE	14	0	0	19	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	3	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	14	0.24	0.36	0.0267	0.0444	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BICR56_UPPER_AERODIGESTIVE_TRACT	0.24	0.36	0.0711	FALSE	164	806	69	479	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	7	0.83	0.42	0.0355	0.0089	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	BICR56_UPPER_AERODIGESTIVE_TRACT	0.42	0.83	0.0444	FALSE	16	356	14	466	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	CCDC122--ENOX1	4	0	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0355	FALSE	39	52	2	34	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	3	4	MT-ND3	1249	chrM:10307:+	MT-ATP8	4427	chrM:8446:+	INCL_NON_REF_SPLICE	YES	83	0	0.08	1	0.0267	0.0355	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR56_UPPER_AERODIGESTIVE_TRACT	0.08	1	0.0622	FALSE	351	233	23	137	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	4	0	MT-ND3	1053	chrM:10111:+	MT-ATP8	4482	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0355	FALSE	351	233	23	137	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	4	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0355	FALSE	351	233	23	137	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0267	0.0355	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0622	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	0	MT-ND4	1015	chrM:10774:+	MT-ND4L	5613	chrM:10704:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0355	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.78	0.0267	0.0355	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	0.78	1	0.0622	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	3	4	MT-TC	1054	chrM:5773:-	MT-TY	4095	chrM:5863:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0267	0.0355	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0622	FALSE	51	280	19	36	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	3	2	MT-ND3	1249	chrM:10307:+	MT-ATP8	4462	chrM:8481:+	INCL_NON_REF_SPLICE	NO	83	667	0.06	0.01	0.0267	0.0178	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR56_UPPER_AERODIGESTIVE_TRACT	0.01	0.06	0.0445	FALSE	351	233	23	137	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MIR205HG--C9orf3	3	0	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0267	TRUE	86	303	14	25	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	3	0	MT-ND3	1105	chrM:10163:+	MT-ATP8	4397	chrM:8416:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0267	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0267	FALSE	351	233	23	137	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0267	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0267	FALSE	344	821	44	306	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1027	chrM:14647:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0267	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0267	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0267	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0267	FALSE	499	1288	110	792	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0267	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0267	FALSE	369	2501	205	193	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0267	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0267	FALSE	369	2501	205	193	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	3	0	MT-TC	1066	chrM:5761:-	MT-TY	4121	chrM:5837:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0267	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0267	FALSE	51	280	19	36	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	MT-TI--MT-ND1	3	0	MT-TI	1004	chrM:4266:+	MT-ND1	4978	chrM:4215:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0267	0	LOCAL_REARRANGEMENT:+:[1],MT-TI->chrM:4263-4331:+,mitochondrially_encoded_tRNA_isoleucine,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0267	FALSE	57	10	0	4	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	14	0.2	0.22	0.0178	0.0178	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BICR56_UPPER_AERODIGESTIVE_TRACT	0.2	0.22	0.0356	FALSE	125	705	46	456	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	18197	chr21:16225752:-	ONLY_REF_SPLICE	YES	0	207	1	0.01	0.0178	0.0089	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	BICR56_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.0267	FALSE	0	0	0	1	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0089	0.0355	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0444	FALSE	192	492	57	212	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0089	0.0355	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0444	FALSE	407	2205	196	549	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0089	0.0178	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BICR56_UPPER_AERODIGESTIVE_TRACT	1	1	0.0267	FALSE	93	270	15	244	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	AC007879.7--MKNK1	1	1	AC007879.7	1506	chr2:208104879:+	MKNK1	20580	chr1:47037839:-	ONLY_REF_SPLICE	YES	31	56	0.06	0.03	0.0089	0.0089	AC007879.7->chr2:208104374-208110611:+,MKNK1->MAP_kinase_interacting_serine/threonine_kinase_1,chr1:47023090-47082515:-	BICR56_UPPER_AERODIGESTIVE_TRACT	0.03	0.06	0.0178	TRUE	0	0	0	1	0	FALSE	ACH-000771
BICR56_UPPER_AERODIGESTIVE_TRACT	EDF1--SLC25A10	1	1	EDF1	2690	chr9:139757740:-	SLC25A10	12757	chr17:79681983:+	ONLY_REF_SPLICE	YES	576	23	0	0.08	0.0089	0.0089	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,SLC25A10->chr17:79670401-79687569:+,chr17:79670404-79688042:+,solute_carrier_family_25_member_10	BICR56_UPPER_AERODIGESTIVE_TRACT	0	0.08	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000771
NCIH1876_LUNG	UAP1--RGS4	217	73	UAP1	3349	chr1:162536138:+	RGS4	18165	chr1:163039042:+	ONLY_REF_SPLICE	YES	53	0	0.85	1	2.5089	0.844	{Klijn_CCL:Lung=1},UAP1->UDP-N-acetylglucosamine_pyrophosphorylase_1,chr1:162531323-162569627:+,RGS4->chr1:163038565-163046592:+,regulator_of_G-protein_signaling_4	NCIH1876_LUNG	0.85	1	3.3529	TRUE	0	0	0	1	0	TRUE	ACH-000586
NCIH1876_LUNG	KANSL1--ARL17B	135	71	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	48	46	0.81	0.82	1.5608	0.8209	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH1876_LUNG	0.81	0.82	2.3817	TRUE	181	1564	124	196	0	FALSE	ACH-000586
NCIH1876_LUNG	RP4-565E6.1--HYDIN	94	32	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.99	1.0868	0.37	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1876_LUNG	0.99	1	1.4568	TRUE	456	1387	91	133	0	FALSE	ACH-000586
NCIH1876_LUNG	TIMM23B--LINC00843	92	35	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0637	0.4047	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1876_LUNG	0.99	1	1.4684	TRUE	508	994	45	981	0	FALSE	ACH-000586
NCIH1876_LUNG	TIMM23--RP11-464F9.1	62	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	150	6	0.3	0.92	0.7168	0.0347	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1876_LUNG	0.3	0.92	0.7515	TRUE	519	3926	326	965	0	FALSE	ACH-000586
NCIH1876_LUNG	ZNF654--HMGB2	53	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6128	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1876_LUNG	1	1	0.6128	TRUE	0	0	0	518	0	FALSE	ACH-000586
NCIH1876_LUNG	RP11-123O10.4--GRIP1	42	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.98	0.4856	0.0694	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1876_LUNG	0.98	1	0.555	FALSE	416	2512	207	587	0	FALSE	ACH-000586
NCIH1876_LUNG	CREBBP--SRRM2-AS1	33	16	CREBBP	4785	chr16:3860604:-	SRRM2-AS1	48010	chr16:2793720:-	ONLY_REF_SPLICE	YES	14	1	0.78	0.98	0.3815	0.185	CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,SRRM2-AS1->SRRM2_antisense_RNA_1,chr16:2787077-2802601:-	NCIH1876_LUNG	0.78	0.98	0.5665	TRUE	0	0	0	1	0	TRUE	ACH-000586
NCIH1876_LUNG	PCBP2--CDS2	22	0	PCBP2	21228	chr12:53873455:+	CDS2	47507	chr20:5177881:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2544	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	NCIH1876_LUNG	1	1	0.2544	TRUE	0	802	86	3	772	TRUE	ACH-000586
NCIH1876_LUNG	PCBP2--CDS2	20	0	PCBP2	21220	chr12:53873447:+	CDS2	47498	chr20:5177872:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2312	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	NCIH1876_LUNG	1	1	0.2312	TRUE	0	802	86	3	772	TRUE	ACH-000586
NCIH1876_LUNG	CREBBP--SRRM2-AS1	14	20	CREBBP	4785	chr16:3860604:-	SRRM2-AS1	45817	chr16:2799660:-	ONLY_REF_SPLICE	YES	14	9	0.71	0.79	0.1619	0.2312	CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,SRRM2-AS1->SRRM2_antisense_RNA_1,chr16:2787077-2802601:-	NCIH1876_LUNG	0.71	0.79	0.3931	TRUE	0	0	0	1	0	TRUE	ACH-000586
NCIH1876_LUNG	MT-TA--MT-TC	17	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1966	0.0925	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1876_LUNG	1	1	0.2891	FALSE	462	80	0	856	0	FALSE	ACH-000586
NCIH1876_LUNG	RP11-120D5.1--MID1	14	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	23	1	0.39	0.1619	0.0116	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1876_LUNG	0.39	1	0.1735	FALSE	16	356	14	466	0	FALSE	ACH-000586
NCIH1876_LUNG	RP11-444D3.1--SOX5	11	9	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	2	1	0.91	0.1272	0.1041	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1876_LUNG	0.91	1	0.2313	TRUE	477	1352	189	275	0	FALSE	ACH-000586
NCIH1876_LUNG	MT-ND6--MT-TE	13	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1503	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1876_LUNG	1	1	0.1503	FALSE	499	1288	110	792	0	FALSE	ACH-000586
NCIH1876_LUNG	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1387	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1876_LUNG	1	1	0.1387	TRUE	0	0	0	434	0	FALSE	ACH-000586
NCIH1876_LUNG	MT-ND6--MT-TE	10	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1156	0.0578	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1876_LUNG	1	1	0.1734	FALSE	499	1288	110	792	0	FALSE	ACH-000586
NCIH1876_LUNG	PCBP2--CDS2	10	0	PCBP2	21225	chr12:53873452:+	CDS2	47503	chr20:5177877:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1156	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	NCIH1876_LUNG	1	1	0.1156	TRUE	0	802	86	3	772	TRUE	ACH-000586
NCIH1876_LUNG	MAF--RP11-679B19.2	9	3	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1041	0.0347	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	NCIH1876_LUNG	1	1	0.1388	TRUE	48	25	3	38	0	FALSE	ACH-000586
NCIH1876_LUNG	PCBP2--CDS2	9	0	PCBP2	21228	chr12:53873455:+	CDS2	47508	chr20:5177882:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1041	0	GTEx&tcga_normals:174/3694=4.71%,GTEx:3.40%,PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,CDS2->CDP-diacylglycerol_synthase_2,chr20:5107432-5178533:+	NCIH1876_LUNG	1	1	0.1041	TRUE	0	802	86	3	772	TRUE	ACH-000586
NCIH1876_LUNG	CTD-2008L17.1--RP11-456O19.2	8	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0925	0.0231	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1876_LUNG	0.83	1	0.1156	FALSE	33	240	4	98	0	FALSE	ACH-000586
NCIH1876_LUNG	HSPBP1--GRK5	8	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0925	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH1876_LUNG	1	1	0.0925	TRUE	1	39	0	134	39	FALSE	ACH-000586
NCIH1876_LUNG	MT-ND6--MT-TE	8	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0925	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1876_LUNG	1	1	0.0925	FALSE	499	1288	110	792	0	FALSE	ACH-000586
NCIH1876_LUNG	KANSL1--ARL17B	3	17	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	72	46	0.22	0.3	0.0347	0.1966	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH1876_LUNG	0.22	0.3	0.2313	TRUE	105	90	7	93	0	FALSE	ACH-000586
NCIH1876_LUNG	GNGT1--AC002076.10	6	4	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	5	0	0.67	1	0.0694	0.0462	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	NCIH1876_LUNG	0.67	1	0.1156	FALSE	0	28	0	37	0	FALSE	ACH-000586
NCIH1876_LUNG	CALM3--MT-ND4L	5	5	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1112	0	0.01	1	0.0578	0.0578	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1876_LUNG	0.01	1	0.1156	FALSE	1	1	0	107	0	FALSE	ACH-000586
NCIH1876_LUNG	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0694	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1876_LUNG	1	1	0.0694	TRUE	465	1949	224	605	0	FALSE	ACH-000586
NCIH1876_LUNG	KANSL1--ARL17B	1	18	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	48	32	0.28	0.37	0.0116	0.2081	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH1876_LUNG	0.28	0.37	0.2197	TRUE	20	16	0	28	0	FALSE	ACH-000586
NCIH1876_LUNG	RP11-108K3.1--GLDN	4	6	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0462	0.0694	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH1876_LUNG	1	1	0.1156	FALSE	0	19	0	46	0	FALSE	ACH-000586
NCIH1876_LUNG	MT-ND6--MT-TE	3	7	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0.0809	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1876_LUNG	1	1	0.1156	FALSE	499	1288	110	792	0	FALSE	ACH-000586
NCIH1876_LUNG	RP11-123O10.4--GRIP1	4	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.0462	0.0347	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1876_LUNG	0.88	1	0.0809	FALSE	93	270	15	244	0	FALSE	ACH-000586
NCIH1876_LUNG	RP4-565E6.1--HYDIN	3	7	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	30	1	0.25	0.0347	0.0809	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1876_LUNG	0.25	1	0.1156	TRUE	84	87	4	41	0	FALSE	ACH-000586
NCIH1876_LUNG	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1876_LUNG	1	1	0.0462	FALSE	13	9	0	364	0	FALSE	ACH-000586
NCIH1876_LUNG	PVT1--SNTB1	4	0	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0462	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH1876_LUNG	1	1	0.0462	TRUE	0	0	0	25	0	FALSE	ACH-000586
NCIH1876_LUNG	RP11-1L12.3--SLC5A12	4	0	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0462	0	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	NCIH1876_LUNG	1	1	0.0462	TRUE	3	101	0	60	0	FALSE	ACH-000586
NCIH1876_LUNG	RP11-444D3.1--SOX5	2	7	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	1	2	0.9	0.82	0.0231	0.0809	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1876_LUNG	0.82	0.9	0.104	TRUE	274	363	69	150	0	FALSE	ACH-000586
NCIH1876_LUNG	GDAP1--RP11-758M4.1	3	2	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	110	0	0.04	1	0.0347	0.0231	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH1876_LUNG	0.04	1	0.0578	TRUE	7	28	0	43	0	FALSE	ACH-000586
NCIH1876_LUNG	GNGT1--AC002076.10	2	6	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	5	0	0.62	1	0.0231	0.0694	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	NCIH1876_LUNG	0.62	1	0.0925	FALSE	0	10	0	30	0	FALSE	ACH-000586
NCIH1876_LUNG	HSPA5--MAPKAP1	3	1	HSPA5	2910	chr9:128001700:-	MAPKAP1	26318	chr9:128284044:-	ONLY_REF_SPLICE	YES	620	247	0.01	0.02	0.0347	0.0116	HSPA5->Oncogene{Bushman},chr9:127997132-128003609:-,heat_shock_protein_family_A_(Hsp70)_member_5,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	NCIH1876_LUNG	0.01	0.02	0.0463	FALSE	0	0	0	1	0	FALSE	ACH-000586
NCIH1876_LUNG	IRF3--ZNF808	3	1	IRF3	1204	chr19:50168929:-	ZNF808	13730	chr19:53046519:+	ONLY_REF_SPLICE	YES	99	26	0.04	0.13	0.0347	0.0116	IRF3->chr19:50162826-50169132:-,interferon_regulatory_factor_3,ZNF808->chr19:53030905-53067717:+,zinc_finger_protein_808	NCIH1876_LUNG	0.04	0.13	0.0463	TRUE	0	0	0	1	0	FALSE	ACH-000586
NCIH1876_LUNG	ARMC4P1--RP11-748L13.2	3	0	ARMC4P1	5853	chr10:27577753:+	RP11-748L13.2	13614	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_INVERSION:+:-:[42533],ARMC4P1->armadillo_repeat_containing_4_pseudogene_1,chr10:27547691-27577753:+,RP11-748L13.2->chr10:27620286-27630181:-	NCIH1876_LUNG	1	1	0.0347	TRUE	1	34	11	8	34	TRUE	ACH-000586
NCIH1876_LUNG	CTD-2008L17.1--RP11-456O19.2	2	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0231	0.0462	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1876_LUNG	0.75	1	0.0693	FALSE	20	187	4	79	0	FALSE	ACH-000586
NCIH1876_LUNG	DNAJC25--UGCG	3	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	NCIH1876_LUNG	1	1	0.0347	TRUE	50	73	10	50	0	FALSE	ACH-000586
NCIH1876_LUNG	OSBPL3--RPS4X	3	0	OSBPL3	17627	chr7:24874069:-	RPS4X	35554	chrX:71495557:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	OSBPL3->Oncogene{Bushman},chr7:24836158-25021253:-,oxysterol_binding_protein_like_3,RPS4X->chrX:71475529-71497150:-,ribosomal_protein_S4,_X-linked	NCIH1876_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000586
NCIH1876_LUNG	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1876_LUNG	1	1	0.0347	TRUE	458	1351	185	561	0	FALSE	ACH-000586
NCIH1876_LUNG	IRF3--ZNF808	2	2	IRF3	1245	chr19:50168888:-	ZNF808	13730	chr19:53046519:+	ONLY_REF_SPLICE	YES	142	26	0.03	0.13	0.0231	0.0231	IRF3->chr19:50162826-50169132:-,interferon_regulatory_factor_3,ZNF808->chr19:53030905-53067717:+,zinc_finger_protein_808	NCIH1876_LUNG	0.03	0.13	0.0462	TRUE	0	0	0	1	0	FALSE	ACH-000586
NCIH1876_LUNG	FARP1--STK24	2	1	FARP1	5345	chr13:98865667:+	STK24	73769	chr13:99134575:-	ONLY_REF_SPLICE	NO	164	383	0.02	0.01	0.0231	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Aorta=1,Pituitary=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Ovary=1},LOCAL_INVERSION:+:-:[428],FARP1->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_1,chr13:98794816-99102027:+,STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24	NCIH1876_LUNG	0.01	0.02	0.0347	FALSE	0	1	0	2	0	FALSE	ACH-000586
NCIH1876_LUNG	RP11-108K3.1--GLDN	1	5	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0116	0.0578	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH1876_LUNG	1	1	0.0694	FALSE	0	14	0	30	0	FALSE	ACH-000586
NCIH1876_LUNG	SHFM1--DLX6-AS1	2	1	SHFM1	7020	chr7:96324110:-	DLX6-AS1	31487	chr7:96598430:-	ONLY_REF_SPLICE	YES	502	245	0.01	0.01	0.0231	0.0116	SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-	NCIH1876_LUNG	0.01	0.01	0.0347	FALSE	0	1	0	6	0	FALSE	ACH-000586
NCIH1876_LUNG	AGBL4--BEND5	2	0	AGBL4	8128	chr1:49332863:-	BEND5	28501	chr1:49227142:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	NEIGHBORS_OVERLAP:-:-:[49446],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	NCIH1876_LUNG	1	1	0.0231	FALSE	0	10	1	4	0	FALSE	ACH-000586
NCIH1876_LUNG	CYTH1--USP36	2	0	CYTH1	1096	chr17:76778284:-	USP36	28423	chr17:76834832:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	LOCAL_REARRANGEMENT:-:[5084],CYTH1->chr17:76670130-76778379:-,cytohesin_1,USP36->chr17:76783463-76837523:-,ubiquitin_specific_peptidase_36	NCIH1876_LUNG	1	1	0.0231	TRUE	0	1	0	3	1	TRUE	ACH-000586
NCIH1876_LUNG	EIF3E--GAK	2	0	EIF3E	6301	chr8:109260842:-	GAK	35162	chr4:891946:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E,GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase	NCIH1876_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000586
NCIH1876_LUNG	FARP1--STK24	2	0	FARP1	1931	chr13:98795746:+	STK24	70323	chr13:99171727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Aorta=1,Pituitary=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Ovary=1},LOCAL_INVERSION:+:-:[428],FARP1->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_1,chr13:98794816-99102027:+,STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24	NCIH1876_LUNG	1	1	0.0231	TRUE	0	0	0	2	0	TRUE	ACH-000586
NCIH1876_LUNG	GDAP1--RP11-758M4.1	2	0	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	19325	chr8:75614614:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH1876_LUNG	1	1	0.0231	TRUE	0	1	0	4	0	FALSE	ACH-000586
NCIH1876_LUNG	PRKCI--ATAD5	2	0	PRKCI	18733	chr3:170016898:+	ATAD5	47571	chr17:29219625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PRKCI->ArcherDX_panel,FoundationOne_panel,chr3:169940153-170023769:+,protein_kinase_C_iota,ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+	NCIH1876_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000586
NCIH1876_LUNG	RP11-108K3.1--GLDN	1	4	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0.0462	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH1876_LUNG	1	1	0.0578	FALSE	0	30	1	55	0	FALSE	ACH-000586
NCIH1876_LUNG	RP13-188A5.1--KLF8	2	0	RP13-188A5.1	1678	chrX:55935233:+	KLF8	9003	chrX:56291613:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	NCIH1876_LUNG	1	1	0.0231	TRUE	1	9	1	5	7	TRUE	ACH-000586
NCIH1876_LUNG	RRAS2--CADM1	2	0	RRAS2	2538	chr11:14380309:-	CADM1	24718	chr11:115111140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	RRAS2->Oncogene{Bushman},chr11:14299472-14386052:-,related_RAS_viral_(r-ras)_oncogene_homolog_2,CADM1->cell_adhesion_molecule_1,chr11:115039938-115375675:-	NCIH1876_LUNG	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000586
NCIH1876_LUNG	SLC25A13--DLX6-AS1	2	0	SLC25A13	4550	chr7:95906508:-	DLX6-AS1	30296	chr7:96598430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13,DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-	NCIH1876_LUNG	1	1	0.0231	TRUE	0	0	0	2	0	TRUE	ACH-000586
NCIH1876_LUNG	TMLHE--CLIC2	2	0	TMLHE	2332	chrX:154842453:-	CLIC2	18105	chrX:154528458:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,CLIC2->chloride_intracellular_channel_2,chrX:154505500-154563966:-	NCIH1876_LUNG	1	1	0.0231	TRUE	5	6	1	7	0	FALSE	ACH-000586
NCIH1876_LUNG	WTAPP1--RUVBL1	2	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	NCIH1876_LUNG	1	1	0.0231	TRUE	9	252	6	66	0	FALSE	ACH-000586
NCIH1876_LUNG	MAF--RP11-679B19.2	1	2	MAF	2930	chr16:79632682:-	RP11-679B19.2	13121	chr16:79246798:-	ONLY_REF_SPLICE	YES	69	0	0.04	1	0.0116	0.0231	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	NCIH1876_LUNG	0.04	1	0.0347	TRUE	11	11	0	4	0	FALSE	ACH-000586
NCIH1876_LUNG	RP1-34H18.1--NAV3	1	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0.0231	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH1876_LUNG	1	1	0.0347	TRUE	254	575	65	124	0	FALSE	ACH-000586
NCIH1876_LUNG	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	18992	chr12:23999127:-	ONLY_REF_SPLICE	YES	0	14	1	0.18	0.0116	0.0231	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1876_LUNG	0.18	1	0.0347	TRUE	3	4	0	10	0	FALSE	ACH-000586
NCIH1876_LUNG	CLSPN--THRAP3	1	1	CLSPN	1121	chr1:36235448:-	THRAP3	33043	chr1:36756975:+	ONLY_REF_SPLICE	YES	15	194	0.12	0.01	0.0116	0.0116	CLSPN->chr1:36185819-36235568:-,claspin,THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3	NCIH1876_LUNG	0.01	0.12	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000586
NCIH1876_LUNG	LDLR--SMARCA4	1	1	LDLR	13239	chr19:11224438:+	SMARCA4	64751	chr19:11168931:+	ONLY_REF_SPLICE	YES	28	303	0.07	0.01	0.0116	0.0116	LOCAL_REARRANGEMENT:+:[23967],LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	NCIH1876_LUNG	0.01	0.07	0.0232	FALSE	0	2	0	2	0	FALSE	ACH-000586
NCIH1876_LUNG	RPL32P3--IFT122	1	1	RPL32P3	4754	chr3:129112478:-	IFT122	38380	chr3:129221554:+	ONLY_REF_SPLICE	YES	28	62	0.07	0.03	0.0116	0.0116	GTEx_FI:{Brain=[count:2=pct:0.3],Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},LOCAL_INVERSION:-:+:[40470],RPL32P3->chr3:129101765-129118498:-,ribosomal_protein_L32_pseudogene_3,IFT122->chr3:129158968-129239198:+,intraflagellar_transport_122	NCIH1876_LUNG	0.03	0.07	0.0232	TRUE	0	0	0	4	0	FALSE	ACH-000586
NCIH1876_LUNG	TRIP12--DNER	1	1	TRIP12	10103	chr2:230701564:-	DNER	63471	chr2:230282946:-	ONLY_REF_SPLICE	YES	75	156	0.03	0.01	0.0116	0.0116	NEIGHBORS[49280],TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12,DNER->chr2:230222345-230579274:-,delta/notch_like_EGF_repeat_containing	NCIH1876_LUNG	0.01	0.03	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000586
NCIH1876_LUNG	TYMS--ZNF638	1	1	TYMS	4286	chr18:662320:+	ZNF638	38793	chr2:71623271:+	ONLY_REF_SPLICE	YES	215	125	0.01	0.02	0.0116	0.0116	TYMS->chr18:657604-673578:+,thymidylate_synthetase,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	NCIH1876_LUNG	0.01	0.02	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000586
NCIH1963_LUNG	RLF--MYCL	520	212	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	388	1526	0.65	0.32	6.4861	2.6443	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH1963_LUNG	0.32	0.65	9.1304	TRUE	0	0	0	10	0	TRUE	ACH-000729
NCIH1963_LUNG	RLF--MYCL	265	337	RLF	1264	chr1:40627308:+	MYCL	18060	chr1:40367115:-	ONLY_REF_SPLICE	YES	388	698	0.61	0.46	3.3054	4.2035	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH1963_LUNG	0.46	0.61	7.5089	TRUE	0	0	0	6	0	TRUE	ACH-000729
NCIH1963_LUNG	TCERG1--RBM27	293	57	TCERG1	19681	chr5:145878249:+	RBM27	50209	chr5:145648983:+	ONLY_REF_SPLICE	YES	132	12	0.73	0.97	3.6547	0.711	{Klijn_CCL:Sarcomatoid=1},TCERG1->chr5:145826874-145891524:+,transcription_elongation_regulator_1,RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+	NCIH1963_LUNG	0.73	0.97	4.3657	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	CAP1--HPCAL4	220	90	CAP1	10062	chr1:40533389:+	HPCAL4	18531	chr1:40150283:-	ONLY_REF_SPLICE	YES	1377	34	0.18	0.9	2.7441	1.1226	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,HPCAL4->chr1:40144320-40157361:-,hippocalcin_like_4	NCIH1963_LUNG	0.18	0.9	3.8667	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	RP11-123O10.4--GRIP1	103	35	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	3	1	0.98	1.2847	0.4366	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1963_LUNG	0.98	1	1.7213	FALSE	416	2512	207	587	0	FALSE	ACH-000729
NCIH1963_LUNG	TRIT1--RP11-656D10.5	69	55	TRIT1	3437	chr1:40322918:-	RP11-656D10.5	16996	chr1:40980306:-	INCL_NON_REF_SPLICE	YES	2170	113	0.05	0.52	0.8607	0.686	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,RP11-656D10.5->chr1:40980133-40980729:-	NCIH1963_LUNG	0.05	0.52	1.5467	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	TRIT1--RP11-656D10.5	56	53	TRIT1	3406	chr1:40322949:-	RP11-656D10.5	16989	chr1:40980313:-	INCL_NON_REF_SPLICE	YES	2067	122	0.05	0.47	0.6985	0.6611	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,RP11-656D10.5->chr1:40980133-40980729:-	NCIH1963_LUNG	0.05	0.47	1.3596	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	TIMM23B--LINC00843	60	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7484	0.2619	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1963_LUNG	1	1	1.0103	TRUE	508	994	45	981	0	FALSE	ACH-000729
NCIH1963_LUNG	OR51S1--TP53I11	52	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6486	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH1963_LUNG	1	1	0.6486	TRUE	402	216	10	229	0	FALSE	ACH-000729
NCIH1963_LUNG	TRIT1--RP11-656D10.5	30	76	TRIT1	3437	chr1:40322918:-	RP11-656D10.5	16764	chr1:40980538:-	INCL_NON_REF_SPLICE	YES	2170	232	0.05	0.31	0.3742	0.948	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,RP11-656D10.5->chr1:40980133-40980729:-	NCIH1963_LUNG	0.05	0.31	1.3222	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	PTPN4--PCDP1	36	36	PTPN4	6279	chr2:120620219:+	PCDP1	72391	chr2:120404534:+	ONLY_REF_SPLICE	YES	25	0	0.74	1	0.449	0.449	LOCAL_REARRANGEMENT:+:[97380],PTPN4->chr2:120517207-120741394:+,protein_tyrosine_phosphatase,_non-receptor_type_4,PCDP1->chr2:120302008-120419827:+	NCIH1963_LUNG	0.74	1	0.898	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	RP11-656D10.3--SMAP2	43	4	RP11-656D10.3	1073	chr1:40974261:-	SMAP2	14171	chr1:40878688:+	ONLY_REF_SPLICE	YES	8	827	0.85	0.05	0.5363	0.0499	LOCAL_INVERSION:-:+:[69831],RP11-656D10.3->chr1:40958829-40974333:-,SMAP2->chr1:40810522-40888998:+,small_ArfGAP2	NCIH1963_LUNG	0.05	0.85	0.5862	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	COL9A2--TRIT1	39	18	COL9A2	6735	chr1:40777334:-	TRIT1	28076	chr1:40313769:-	ONLY_REF_SPLICE	YES	3676	1738	0.02	0.03	0.4865	0.2245	COL9A2->chr1:40766159-40783488:-,collagen_type_IX_alpha_2,TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1	NCIH1963_LUNG	0.02	0.03	0.711	TRUE	0	0	0	1	0	FALSE	ACH-000729
NCIH1963_LUNG	ZNF654--HMGB2	41	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5114	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1963_LUNG	1	1	0.5114	TRUE	0	0	0	518	0	FALSE	ACH-000729
NCIH1963_LUNG	PTPN4--PCDP1	31	24	PTPN4	6279	chr2:120620219:+	PCDP1	74693	chr2:120409550:+	ONLY_REF_SPLICE	YES	25	3	0.69	0.95	0.3867	0.2994	LOCAL_REARRANGEMENT:+:[97380],PTPN4->chr2:120517207-120741394:+,protein_tyrosine_phosphatase,_non-receptor_type_4,PCDP1->chr2:120302008-120419827:+	NCIH1963_LUNG	0.69	0.95	0.6861	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	TRIT1--RP11-656D10.5	26	44	TRIT1	3405	chr1:40322950:-	RP11-656D10.5	16995	chr1:40980307:-	INCL_NON_REF_SPLICE	YES	2063	113	0.03	0.38	0.3243	0.5488	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,RP11-656D10.5->chr1:40980133-40980729:-	NCIH1963_LUNG	0.03	0.38	0.8731	TRUE	0	0	0	1	0	FALSE	ACH-000729
NCIH1963_LUNG	MT-TA--MT-TC	33	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4116	0.1247	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1963_LUNG	1	1	0.5363	FALSE	462	80	0	856	0	FALSE	ACH-000729
NCIH1963_LUNG	TIMM23--RP11-464F9.1	34	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	102	3	0.26	0.92	0.4241	0.0125	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1963_LUNG	0.26	0.92	0.4366	TRUE	519	3926	326	965	0	FALSE	ACH-000729
NCIH1963_LUNG	RP11-680G10.1--GSE1	27	16	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	37	1	0.54	0.3368	0.1996	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1963_LUNG	0.54	1	0.5364	TRUE	458	1351	185	561	0	FALSE	ACH-000729
NCIH1963_LUNG	RP11-499F3.2--TYW1	30	2	RP11-499F3.2	1198	chr15:82163269:-	TYW1	23788	chr7:66648113:+	ONLY_REF_SPLICE	YES	0	46	1	0.41	0.3742	0.0249	RP11-499F3.2->chr15:81952823-82163466:-,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	NCIH1963_LUNG	0.41	1	0.3991	TRUE	1	3	0	7	3	TRUE	ACH-000729
NCIH1963_LUNG	RP11-1319K7.1--OCLN	24	20	RP11-1319K7.1	12960	chr5:69394512:-	OCLN	23178	chr5:68830521:+	ONLY_REF_SPLICE	YES	3	7	0.94	0.86	0.2994	0.2495	GTEx_FI:{Blood=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Breast=[count:2=pct:1.8],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Spleen=[count:1=pct:0.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3]},RP11-1319K7.1->chr5:69390202-69424261:-,OCLN->chr5:68788119-68853931:+,occludin	NCIH1963_LUNG	0.86	0.94	0.5489	TRUE	18	3	1	7	0	FALSE	ACH-000729
NCIH1963_LUNG	RP11-1319K7.1--OCLN	19	17	RP11-1319K7.1	9896	chr5:69400244:-	OCLN	23178	chr5:68830521:+	ONLY_REF_SPLICE	YES	15	7	0.71	0.84	0.237	0.212	GTEx_FI:{Blood=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Breast=[count:2=pct:1.8],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Spleen=[count:1=pct:0.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3]},RP11-1319K7.1->chr5:69390202-69424261:-,OCLN->chr5:68788119-68853931:+,occludin	NCIH1963_LUNG	0.71	0.84	0.449	TRUE	6	0	0	2	0	FALSE	ACH-000729
NCIH1963_LUNG	PPT1--RP1-63P18.2	21	7	PPT1	1589	chr1:40562787:-	RP1-63P18.2	16389	chr1:41029206:+	ONLY_REF_SPLICE	YES	1399	0	0.02	1	0.2619	0.0873	PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1,RP1-63P18.2->chr1:41029206-41029331:+	NCIH1963_LUNG	0.02	1	0.3492	TRUE	0	0	0	1	0	FALSE	ACH-000729
NCIH1963_LUNG	CCDC102B--RP11-169F17.1	21	6	CCDC102B	13702	chr18:66513658:+	RP11-169F17.1	26991	chr18:70868024:-	ONLY_REF_SPLICE	YES	8	0	0.77	1	0.2619	0.0748	CCDC102B->chr18:66382446-66722426:+,coiled-coil_domain_containing_102B,RP11-169F17.1->chr18:70818476-70931715:-	NCIH1963_LUNG	0.77	1	0.3367	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	RP4-565E6.1--HYDIN	20	9	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2495	0.1123	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1963_LUNG	1	1	0.3618	TRUE	456	1387	91	133	0	FALSE	ACH-000729
NCIH1963_LUNG	MT-ND4--MT-ND4L	7	55	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0873	0.686	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1963_LUNG	0.97	1	0.7733	FALSE	344	821	44	306	0	FALSE	ACH-000729
NCIH1963_LUNG	FAF1--AGBL4	16	6	FAF1	4914	chr1:51253672:-	AGBL4	31364	chr1:50317190:-	ONLY_REF_SPLICE	YES	96	2	0.19	0.92	0.1996	0.0748	{Klijn_CCL:Lung=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	NCIH1963_LUNG	0.19	0.92	0.2744	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	RP11-656D10.3--ZNF684	17	0	RP11-656D10.3	1073	chr1:40974261:-	ZNF684	7872	chr1:41006258:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.212	0	LOCAL_INVERSION:-:+:[22900],RP11-656D10.3->chr1:40958829-40974333:-,ZNF684->chr1:40997233-41013841:+,zinc_finger_protein_684	NCIH1963_LUNG	1	1	0.212	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	TCERG1--RBM27	2	57	TCERG1	20966	chr5:145879534:+	RBM27	50209	chr5:145648983:+	ONLY_REF_SPLICE	YES	138	12	0.3	0.83	0.0249	0.711	{Klijn_CCL:Sarcomatoid=1},TCERG1->chr5:145826874-145891524:+,transcription_elongation_regulator_1,RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+	NCIH1963_LUNG	0.3	0.83	0.7359	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	TCERG1--RBM27	4	48	TCERG1	19673	chr5:145878241:+	RBM27	50209	chr5:145648983:+	INCL_NON_REF_SPLICE	YES	126	12	0.29	0.81	0.0499	0.5987	{Klijn_CCL:Sarcomatoid=1},TCERG1->chr5:145826874-145891524:+,transcription_elongation_regulator_1,RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+	NCIH1963_LUNG	0.29	0.81	0.6486	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	RP11-680G10.1--GSE1	13	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	276	1	0.07	0.1622	0.0998	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1963_LUNG	0.07	1	0.262	TRUE	465	1949	224	605	0	FALSE	ACH-000729
NCIH1963_LUNG	MT-ND6--MT-TE	13	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1622	0.0125	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1963_LUNG	1	1	0.1747	FALSE	499	1288	110	792	0	FALSE	ACH-000729
NCIH1963_LUNG	GNGT1--AC002076.10	11	6	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	7	0	0.71	1	0.1372	0.0748	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	NCIH1963_LUNG	0.71	1	0.212	FALSE	0	28	0	37	0	FALSE	ACH-000729
NCIH1963_LUNG	RP11-656D10.3--PPT1	11	5	RP11-656D10.3	1073	chr1:40974261:-	PPT1	8588	chr1:40558179:-	ONLY_REF_SPLICE	YES	8	1825	0.67	0.01	0.1372	0.0624	RP11-656D10.3->chr1:40958829-40974333:-,PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1	NCIH1963_LUNG	0.01	0.67	0.1996	TRUE	0	0	0	1	0	FALSE	ACH-000729
NCIH1963_LUNG	LYPD6B--KIF5C	10	8	LYPD6B	7317	chr2:149987467:+	KIF5C	26449	chr2:149679706:+	ONLY_REF_SPLICE	YES	13	111	0.58	0.14	0.1247	0.0998	LOCAL_REARRANGEMENT:+:[11348],LYPD6B->LY6/PLAUR_domain_containing_6B,chr2:149894621-150071776:+,KIF5C->chr2:149632819-149883273:+,kinesin_family_member_5C	NCIH1963_LUNG	0.14	0.58	0.2245	TRUE	0	0	0	2	0	TRUE	ACH-000729
NCIH1963_LUNG	PPT1--PPIE	10	6	PPT1	1589	chr1:40562787:-	PPIE	20240	chr1:40205837:+	ONLY_REF_SPLICE	YES	1399	55	0.01	0.23	0.1247	0.0748	PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH1963_LUNG	0.01	0.23	0.1995	TRUE	0	0	0	1	0	FALSE	ACH-000729
NCIH1963_LUNG	NETO1--CCDC102B	9	9	NETO1	10342	chr18:70450913:-	CCDC102B	30069	chr18:66503986:+	ONLY_REF_SPLICE	YES	85	15	0.17	0.55	0.1123	0.1123	NETO1->chr18:70409549-70535381:-,neuropilin_and_tolloid_like_1,CCDC102B->chr18:66382446-66722426:+,coiled-coil_domain_containing_102B	NCIH1963_LUNG	0.17	0.55	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	RP11-656D10.3--ZNF684	11	0	RP11-656D10.3	1073	chr1:40974261:-	ZNF684	8901	chr1:41007287:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1372	0	LOCAL_INVERSION:-:+:[22900],RP11-656D10.3->chr1:40958829-40974333:-,ZNF684->chr1:40997233-41013841:+,zinc_finger_protein_684	NCIH1963_LUNG	1	1	0.1372	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	C15orf57--CBX3	9	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	42	66	0.25	0.17	0.1123	0.0624	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1963_LUNG	0.17	0.25	0.1747	TRUE	267	562	48	632	0	FALSE	ACH-000729
NCIH1963_LUNG	NT5C1A--RIMS3	8	8	NT5C1A	1135	chr1:40137576:-	RIMS3	10790	chr1:41113514:-	ONLY_REF_SPLICE	YES	0	46	1	0.26	0.0998	0.0998	NT5C1A->5'-nucleotidase,_cytosolic_IA,chr1:40124793-40137710:-,RIMS3->chr1:41086351-41131329:-,regulating_synaptic_membrane_exocytosis_3	NCIH1963_LUNG	0.26	1	0.1996	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	HSP90AB1--MT-RNR2	9	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1999	0	0.01	1	0.1123	0.0374	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1963_LUNG	0.01	1	0.1497	FALSE	13	9	0	364	0	FALSE	ACH-000729
NCIH1963_LUNG	TTC28--MN1	9	3	TTC28	15001	chr22:28494903:-	MN1	46850	chr22:28147084:-	ONLY_REF_SPLICE	YES	9	12	0.57	0.5	0.1123	0.0374	TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28,MN1->Oncogene{Bushman},chr22:28144265-28197486:-,meningioma_(disrupted_in_balanced_translocation)_1	NCIH1963_LUNG	0.5	0.57	0.1497	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	MT-TA--MT-TC	6	12	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0748	0.1497	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1963_LUNG	1	1	0.2245	FALSE	462	80	0	856	0	FALSE	ACH-000729
NCIH1963_LUNG	MT-ND4--MT-ND4L	4	18	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8075	0	0	1	0.0499	0.2245	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1963_LUNG	0	1	0.2744	FALSE	328	800	43	304	0	FALSE	ACH-000729
NCIH1963_LUNG	RP11-120D5.1--MID1	7	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	14	1	0.48	0.0873	0.0748	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1963_LUNG	0.48	1	0.1621	FALSE	16	356	14	466	0	FALSE	ACH-000729
NCIH1963_LUNG	RP11-123O10.4--GRIP1	5	14	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	5	1	0.79	0.0624	0.1746	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1963_LUNG	0.79	1	0.237	FALSE	93	270	15	244	0	FALSE	ACH-000729
NCIH1963_LUNG	CUL2--FRMD4A	7	2	CUL2	18889	chr10:35314060:-	FRMD4A	50894	chr10:13749113:-	ONLY_REF_SPLICE	YES	67	16	0.12	0.36	0.0873	0.0249	CUL2->chr10:35297479-35379570:-,cullin_2,FRMD4A->FERM_domain_containing_4A,chr10:13685706-14504141:-	NCIH1963_LUNG	0.12	0.36	0.1122	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	NETO1--CCDC102B	5	9	NETO1	10342	chr18:70450913:-	CCDC102B	29018	chr18:66490603:+	ONLY_REF_SPLICE	YES	85	18	0.14	0.44	0.0624	0.1123	NETO1->chr18:70409549-70535381:-,neuropilin_and_tolloid_like_1,CCDC102B->chr18:66382446-66722426:+,coiled-coil_domain_containing_102B	NCIH1963_LUNG	0.14	0.44	0.1747	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	ZMPSTE24--KCNN2	7	1	ZMPSTE24	8690	chr1:40737707:+	KCNN2	27582	chr5:113822747:+	ONLY_REF_SPLICE	YES	2330	1	0	0.89	0.0873	0.0125	ZMPSTE24->chr1:40723779-40759856:+,zinc_metallopeptidase_STE24,KCNN2->chr5:113696642-113832337:+,potassium_calcium-activated_channel_subfamily_N_member_2	NCIH1963_LUNG	0	0.89	0.0998	FALSE	0	0	0	1	0	FALSE	ACH-000729
NCIH1963_LUNG	RP11-1319K7.1--OCLN	5	8	RP11-1319K7.1	8728	chr5:69404135:-	OCLN	23178	chr5:68830521:+	ONLY_REF_SPLICE	YES	23	7	0.36	0.65	0.0624	0.0998	GTEx_FI:{Blood=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Breast=[count:2=pct:1.8],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Spleen=[count:1=pct:0.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3]},RP11-1319K7.1->chr5:69390202-69424261:-,OCLN->chr5:68788119-68853931:+,occludin	NCIH1963_LUNG	0.36	0.65	0.1622	TRUE	2	0	0	2	0	FALSE	ACH-000729
NCIH1963_LUNG	ADK--KAT6B	5	7	ADK	10209	chr10:76285184:+	KAT6B	38997	chr10:76780340:+	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.0624	0.0873	GTEx&tcga_normals:1/3694=0.03%,ADK->adenosine_kinase,chr10:75910960-76469061:+,KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B	NCIH1963_LUNG	0.8	1	0.1497	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	HSP90AB1--MT-RNR2	6	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2009	0	0	1	0.0748	0.0374	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1963_LUNG	0	1	0.1122	FALSE	13	9	0	364	0	FALSE	ACH-000729
NCIH1963_LUNG	GNGT1--AC002076.10	5	6	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	7	0	0.61	1	0.0624	0.0748	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	NCIH1963_LUNG	0.61	1	0.1372	FALSE	0	10	0	30	0	FALSE	ACH-000729
NCIH1963_LUNG	RP11-1319K7.1--OCLN	2	18	RP11-1319K7.1	11795	chr5:69396543:-	OCLN	23178	chr5:68830521:+	ONLY_REF_SPLICE	YES	8	7	0.71	0.74	0.0249	0.2245	GTEx_FI:{Blood=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Breast=[count:2=pct:1.8],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Spleen=[count:1=pct:0.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3]},RP11-1319K7.1->chr5:69390202-69424261:-,OCLN->chr5:68788119-68853931:+,occludin	NCIH1963_LUNG	0.71	0.74	0.2494	TRUE	5	2	0	4	0	FALSE	ACH-000729
NCIH1963_LUNG	MT-ND6--MT-TE	3	13	MT-ND6	1302	chrM:14372:-	MT-TE	4520	chrM:14748:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0.1622	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1963_LUNG	1	1	0.1996	FALSE	499	1288	110	792	0	FALSE	ACH-000729
NCIH1963_LUNG	MT-TA--MT-TC	3	13	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0.1622	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1963_LUNG	1	1	0.1996	FALSE	462	80	0	856	0	FALSE	ACH-000729
NCIH1963_LUNG	MT-ND4--MT-ND4L	3	12	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	253	0	0.06	1	0.0374	0.1497	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1963_LUNG	0.06	1	0.1871	FALSE	344	827	44	306	0	FALSE	ACH-000729
NCIH1963_LUNG	NIPA2--POLA1	6	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0748	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	NCIH1963_LUNG	1	1	0.0748	TRUE	46	1352	75	139	0	FALSE	ACH-000729
NCIH1963_LUNG	CTBP1--BRF1	5	3	CTBP1	3892	chr4:1235113:-	BRF1	50706	chr14:105695250:-	ONLY_REF_SPLICE	YES	398	92	0.02	0.08	0.0624	0.0374	CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-,BRF1->BRF1,_RNA_polymerase_III_transcription_initiation_factor_90_kDa_subunit,chr14:105675623-105781926:-	NCIH1963_LUNG	0.02	0.08	0.0998	TRUE	0	0	0	1	0	FALSE	ACH-000729
NCIH1963_LUNG	MT-ND6--MT-TE	4	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0.0624	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1963_LUNG	1	1	0.1123	FALSE	499	1288	110	792	0	FALSE	ACH-000729
NCIH1963_LUNG	COL9A2--TRIT1	1	16	COL9A2	6735	chr1:40777334:-	TRIT1	28082	chr1:40313763:-	ONLY_REF_SPLICE	NO	3676	1639	0	0.01	0.0125	0.1996	COL9A2->chr1:40766159-40783488:-,collagen_type_IX_alpha_2,TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1	NCIH1963_LUNG	0	0.01	0.2121	TRUE	0	0	0	1	0	FALSE	ACH-000729
NCIH1963_LUNG	MT-ND6--MT-TE	4	4	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0.0499	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1963_LUNG	1	1	0.0998	FALSE	499	1288	110	792	0	FALSE	ACH-000729
NCIH1963_LUNG	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0624	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1963_LUNG	1	1	0.0624	FALSE	462	80	0	856	0	FALSE	ACH-000729
NCIH1963_LUNG	RP11-319G9.5--WWOX	5	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0624	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	NCIH1963_LUNG	1	1	0.0624	FALSE	154	425	28	76	0	FALSE	ACH-000729
NCIH1963_LUNG	MT-ND6--MT-TE	4	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0.0249	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1963_LUNG	1	1	0.0748	FALSE	499	1288	110	792	0	FALSE	ACH-000729
NCIH1963_LUNG	MT-ATP6--MT-CO1	4	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	6339	14185	0	0	0.0499	0.0125	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1963_LUNG	0	0	0.0624	FALSE	183	104	9	328	0	FALSE	ACH-000729
NCIH1963_LUNG	RP11-444D3.1--SOX5	3	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.0374	0.0249	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1963_LUNG	0.71	1	0.0623	TRUE	477	1352	189	275	0	FALSE	ACH-000729
NCIH1963_LUNG	PVT1--SNTB1	3	1	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	2	1	0.67	0.8	0.0374	0.0125	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH1963_LUNG	0.67	0.8	0.0499	TRUE	0	0	0	25	0	FALSE	ACH-000729
NCIH1963_LUNG	RNF152--RP11-879F14.1	3	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	YES	20	0	0.17	1	0.0374	0.0125	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	NCIH1963_LUNG	0.17	1	0.0499	FALSE	119	124	24	18	0	FALSE	ACH-000729
NCIH1963_LUNG	RNF43--TRIM25	3	1	RNF43	3270	chr17:56492687:-	TRIM25	22907	chr17:54981849:-	ONLY_REF_SPLICE	YES	2	79	0.67	0.05	0.0374	0.0125	HGNC_GENEFAM,RNF43->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:56429861-56494956:-,ring_finger_protein_43,TRIM25->chr17:54965270-54991399:-,tripartite_motif_containing_25	NCIH1963_LUNG	0.05	0.67	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	CCDC102B--DOK6	3	0	CCDC102B	14819	chr18:66542022:+	DOK6	35569	chr18:67508480:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	CCDC102B->chr18:66382446-66722426:+,coiled-coil_domain_containing_102B,DOK6->chr18:67068291-67516323:+,docking_protein_6	NCIH1963_LUNG	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	GDAP1--RP11-758M4.1	3	0	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH1963_LUNG	1	1	0.0374	TRUE	7	28	0	43	0	FALSE	ACH-000729
NCIH1963_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1963_LUNG	1	1	0.0374	FALSE	499	1288	110	792	0	FALSE	ACH-000729
NCIH1963_LUNG	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1963_LUNG	1	1	0.0374	FALSE	292	1546	117	613	0	FALSE	ACH-000729
NCIH1963_LUNG	PGAM5--FBRSL1	3	0	PGAM5	4281	chr12:133294150:+	FBRSL1	15283	chr12:133084739:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	NCIH1963_LUNG	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	CELF1--WDR4	2	0	CELF1	14309	chr11:47505941:-	WDR4	45004	chr21:44263391:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,WDR4->WD_repeat_domain_4,chr21:44263204-44299678:-	NCIH1963_LUNG	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	MAPK11--MAPK8IP2	2	0	MAPK11	5220	chr22:50703750:-	MAPK8IP2	15563	chr22:51045086:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	MAPK11->chr22:50702142-50709196:-,mitogen-activated_protein_kinase_11,MAPK8IP2->chr22:51039114-51052409:+,mitogen-activated_protein_kinase_8_interacting_protein_2	NCIH1963_LUNG	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	STX18-AS1--MSX1	2	0	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	NCIH1963_LUNG	1	1	0.0249	TRUE	37	101	7	40	0	FALSE	ACH-000729
NCIH1963_LUNG	WDTC1--NCMAP	2	0	WDTC1	3667	chr1:27589726:+	NCMAP	26141	chr1:24927431:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+,NCMAP->chr1:24882602-24935819:+,non-compact_myelin_associated_protein	NCIH1963_LUNG	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000729
NCIH1963_LUNG	LDLRAD3--PRR5L	1	2	LDLRAD3	5673	chr11:36120011:+	PRR5L	30278	chr11:36415396:+	ONLY_REF_SPLICE	YES	82	2	0.04	0.6	0.0125	0.0249	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	NCIH1963_LUNG	0.04	0.6	0.0374	FALSE	12	80	1	10	0	FALSE	ACH-000729
NCIH1963_LUNG	NT5C1A--RIMS3	1	2	NT5C1A	1135	chr1:40137576:-	RIMS3	11965	chr1:41107628:-	ONLY_REF_SPLICE	YES	0	118	1	0.02	0.0125	0.0249	NT5C1A->5'-nucleotidase,_cytosolic_IA,chr1:40124793-40137710:-,RIMS3->chr1:41086351-41131329:-,regulating_synaptic_membrane_exocytosis_3	NCIH1963_LUNG	0.02	1	0.0374	TRUE	0	0	0	1	0	FALSE	ACH-000729
NCIH1963_LUNG	CENPI--NUP160	1	1	CENPI	1351	chrX:100353528:+	NUP160	47755	chr11:47814498:-	ONLY_REF_SPLICE	YES	82	139	0.02	0.01	0.0125	0.0125	CENPI->centromere_protein_I,chrX:100353178-100418670:+,NUP160->chr11:47799639-47870107:-,nucleoporin_160kDa	NCIH1963_LUNG	0.01	0.02	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000729
NCIH1963_LUNG	CPSF6--CASZ1	1	1	CPSF6	11046	chr12:69656342:+	CASZ1	48556	chr1:10697465:-	ONLY_REF_SPLICE	YES	182	32	0.01	0.06	0.0125	0.0125	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:9=pct:2.9],Lung=[count:2=pct:1.2],Salivary_Gland=[count:1=pct:2.6],Colon=[count:1=pct:0.5]},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CASZ1->castor_zinc_finger_1,chr1:10696661-10856707:-	NCIH1963_LUNG	0.01	0.06	0.025	FALSE	13	7	1	2	0	FALSE	ACH-000729
NCIH1963_LUNG	FAT1--FRG1	1	1	FAT1	6844	chr4:187627717:-	FRG1	47013	chr4:190873317:+	ONLY_REF_SPLICE	YES	37	220	0.05	0.01	0.0125	0.0125	FAT1->ArcherDX_panel,FAT_atypical_cadherin_1,FoundationOne_panel,Oncogene{Bushman},chr4:187508937-187647876:-,FRG1->FSHD_region_gene_1,chr4:190861943-190884359:+	NCIH1963_LUNG	0.01	0.05	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000729
NCIH1963_LUNG	KIAA1958--SNX30	1	1	KIAA1958	3467	chr9:115337531:+	SNX30	22440	chr9:115567056:+	ONLY_REF_SPLICE	YES	33	3	0.06	0.4	0.0125	0.0125	{Klijn_CCL:Lung=1,Colo-Rectal=1},NEIGHBORS[81441],KIAA1958->KIAA1958,chr9:115249127-115431677:+,SNX30->chr9:115513118-115643951:+,sorting_nexin_family_member_30	NCIH1963_LUNG	0.06	0.4	0.025	FALSE	5	9	0	7	0	FALSE	ACH-000729
NCIH1963_LUNG	MAP3K7--ENSA	1	1	MAP3K7	15493	chr6:91246056:-	ENSA	28979	chr1:150598284:-	ONLY_REF_SPLICE	NO	137	1357	0.01	0	0.0125	0.0125	MAP3K7->Oncogene{Bushman},chr6:91223292-91296764:-,mitogen-activated_protein_kinase_kinase_kinase_7,ENSA->chr1:150573327-150602088:-,endosulfine_alpha	NCIH1963_LUNG	0	0.01	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000729
NCIH1963_LUNG	PCGF3--CTBP1	1	1	PCGF3	1223	chr4:699759:+	CTBP1	24300	chr4:1235307:-	ONLY_REF_SPLICE	YES	94	84	0.02	0.02	0.0125	0.0125	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PCGF3->chr4:699537-764428:+,polycomb_group_ring_finger_3,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH1963_LUNG	0.02	0.02	0.025	TRUE	0	1	0	2	0	FALSE	ACH-000729
NCIH1963_LUNG	SDCBP2-AS1--PSMF1	1	1	SDCBP2-AS1	1125	chr20:1306173:+	PSMF1	19028	chr20:1115764:+	ONLY_REF_SPLICE	YES	5	239	0.29	0.01	0.0125	0.0125	SDCBP2-AS1->SDCBP2_antisense_RNA_1,chr20:1306049-1359378:+,PSMF1->chr20:1093906-1160596:+,proteasome_inhibitor_subunit_1	NCIH1963_LUNG	0.01	0.29	0.025	FALSE	0	0	0	2	0	FALSE	ACH-000729
NCIH1963_LUNG	STK33--RIC3	1	1	STK33	25637	chr11:8435042:-	RIC3	32717	chr11:8161740:-	ONLY_REF_SPLICE	NO	52	20	0.04	0.09	0.0125	0.0125	STK33->chr11:8413418-8615836:-,serine/threonine_kinase_33,RIC3->RIC3_acetylcholine_receptor_chaperone,chr11:8127597-8190602:-	NCIH1963_LUNG	0.04	0.09	0.025	TRUE	0	0	0	1	0	FALSE	ACH-000729
H4_CENTRAL_NERVOUS_SYSTEM	FTL--MT-CO1	1549	4	FTL	1296	chr19:49468853:+	MT-CO1	5895	chrM:6220:+	INCL_NON_REF_SPLICE	NO	13873	10055	0.1	0.13	13.5645	0.035	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	H4_CENTRAL_NERVOUS_SYSTEM	0.1	0.13	13.5995	FALSE	0	7	0	14	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	TPX2--HM13	404	70	TPX2	15049	chr20:30371724:+	HM13	26139	chr20:30115287:+	ONLY_REF_SPLICE	YES	202	342	0.7	0.58	3.5378	0.613	TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	H4_CENTRAL_NERVOUS_SYSTEM	0.58	0.7	4.1508	TRUE	0	0	0	2	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	MARS--TMEM120B	240	115	MARS	10946	chr12:57898082:+	TMEM120B	21395	chr12:122181535:+	ONLY_REF_SPLICE	YES	511	53	0.41	0.87	2.1017	1.0071	MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase,TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B	H4_CENTRAL_NERVOUS_SYSTEM	0.41	0.87	3.1088	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	194	98	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	45	1	0.87	1	1.6989	0.8582	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	H4_CENTRAL_NERVOUS_SYSTEM	0.87	1	2.5571	TRUE	0	48	0	65	48	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	115	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0071	0.1664	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	H4_CENTRAL_NERVOUS_SYSTEM	0.99	1	1.1735	TRUE	508	994	45	981	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ZNF766--BSPH1	86	0	ZNF766	1061	chr19:52772884:+	BSPH1	19642	chr19:48471466:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.7531	0	ZNF766->chr19:52772824-52795977:+,zinc_finger_protein_766,BSPH1->binder_of_sperm_protein_homolog_1,chr19:48471303-48495427:-	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.7531	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-574K11.29	67	3	TIMM23	6952	chr10:51606988:-	RP11-574K11.29	13578	chr10:75473090:-	INCL_NON_REF_SPLICE	YES	168	3	0.29	0.96	0.5867	0.0263	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-574K11.29->chr10:75463493-75473339:-	H4_CENTRAL_NERVOUS_SYSTEM	0.29	0.96	0.613	TRUE	1	1	0	6	1	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	45	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	63	1	0.43	0.3941	0.0263	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	H4_CENTRAL_NERVOUS_SYSTEM	0.43	1	0.4204	TRUE	465	1949	224	605	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	MAP2K2--C17orf104	43	9	MAP2K2	1346	chr19:4123781:-	C17orf104	18253	chr17:42734495:+	ONLY_REF_SPLICE	YES	39	1	0.57	0.98	0.3765	0.0788	MAP2K2->ArcherDX_panel,FoundationOne_panel,chr19:4090319-4124126:-,mitogen-activated_protein_kinase_kinase_2,C17orf104->chr17:42733762-42767676:+	H4_CENTRAL_NERVOUS_SYSTEM	0.57	0.98	0.4553	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	38	12	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	20	36	0.71	0.58	0.3328	0.1051	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	H4_CENTRAL_NERVOUS_SYSTEM	0.58	0.71	0.4379	TRUE	181	1564	124	196	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ZNF283--CTD-3187F8.11	36	18	ZNF283	5490	chr19:44339744:+	CTD-3187F8.11	16812	chr19:51781709:+	ONLY_REF_SPLICE	YES	6	0	0.9	1	0.3153	0.1576	ZNF283->chr19:44331444-44353307:+,zinc_finger_protein_283,CTD-3187F8.11->chr19:51774520-51784488:+	H4_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.4729	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RP11-344E13.3--UBBP4	26	52	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	140	0	0.36	1	0.2277	0.4554	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	H4_CENTRAL_NERVOUS_SYSTEM	0.36	1	0.6831	TRUE	23	13	0	54	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	11	105	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	45	0	0.72	1	0.0963	0.9195	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	H4_CENTRAL_NERVOUS_SYSTEM	0.72	1	1.0158	TRUE	0	35	0	55	35	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	34	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.89	0.2977	0.0438	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	H4_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.3415	TRUE	458	1351	185	561	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ZNF350--UPK1A-AS1	33	7	ZNF350	7604	chr19:52472258:-	UPK1A-AS1	16173	chr19:36159587:-	ONLY_REF_SPLICE	YES	6	0	0.87	1	0.289	0.0613	ZNF350->chr19:52467596-52490109:-,zinc_finger_protein_350,UPK1A-AS1->UPK1A_antisense_RNA_1,chr19:36158850-36164193:-	H4_CENTRAL_NERVOUS_SYSTEM	0.87	1	0.3503	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	3	91	AC104389.28	3440	chr11:5367003:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	45	1	0.68	0.99	0.0263	0.7969	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	H4_CENTRAL_NERVOUS_SYSTEM	0.68	0.99	0.8232	TRUE	0	48	0	65	48	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	CCDC57--SLC38A10	23	10	CCDC57	24489	chr17:80109436:-	SLC38A10	57249	chr17:79227040:-	ONLY_REF_SPLICE	YES	21	259	0.61	0.11	0.2014	0.0876	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,SLC38A10->chr17:79218800-79269347:-,solute_carrier_family_38_member_10	H4_CENTRAL_NERVOUS_SYSTEM	0.11	0.61	0.289	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	22	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1927	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.1927	FALSE	416	2512	207	587	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ACOT7--HMCN1	18	10	ACOT7	2135	chr1:6453317:-	HMCN1	36912	chr1:185931650:+	ONLY_REF_SPLICE	YES	93	1	0.23	0.97	0.1576	0.0876	ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-,HMCN1->chr1:185703683-186160085:+,hemicentin_1	H4_CENTRAL_NERVOUS_SYSTEM	0.23	0.97	0.2452	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	20	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1751	0.0088	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.1839	FALSE	462	80	0	856	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	CCDC57--SLC38A10	17	10	CCDC57	24489	chr17:80109436:-	SLC38A10	57254	chr17:79227035:-	INCL_NON_REF_SPLICE	YES	21	254	0.56	0.1	0.1489	0.0876	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,SLC38A10->chr17:79218800-79269347:-,solute_carrier_family_38_member_10	H4_CENTRAL_NERVOUS_SYSTEM	0.1	0.56	0.2365	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ACOT7--HMCN1	15	14	ACOT7	6112	chr1:6418886:-	HMCN1	36912	chr1:185931650:+	ONLY_REF_SPLICE	YES	162	1	0.15	0.97	0.1314	0.1226	ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-,HMCN1->chr1:185703683-186160085:+,hemicentin_1	H4_CENTRAL_NERVOUS_SYSTEM	0.15	0.97	0.254	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RORA--ANXA2	18	2	RORA	13827	chr15:60884586:-	ANXA2	64220	chr15:60648197:-	ONLY_REF_SPLICE	YES	4	2210	0.83	0.01	0.1576	0.0175	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	H4_CENTRAL_NERVOUS_SYSTEM	0.01	0.83	0.1751	FALSE	0	0	0	1	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	16	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1401	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.1401	TRUE	0	16	0	53	13	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	15	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1314	0.0175	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.1489	TRUE	477	1352	189	275	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	12	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	33	35	0.42	0.41	0.1051	0.1051	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	H4_CENTRAL_NERVOUS_SYSTEM	0.41	0.42	0.2102	TRUE	267	562	48	632	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	13	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3244	0	0	1	0.1138	0.0175	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	H4_CENTRAL_NERVOUS_SYSTEM	0	1	0.1313	FALSE	13	9	0	364	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1138	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.1138	TRUE	0	0	0	434	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RRP15--SPATA17	12	3	RRP15	4847	chr1:218480974:+	SPATA17	29371	chr1:218036116:+	ONLY_REF_SPLICE	YES	86	1	0.15	0.94	0.1051	0.0263	RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog,SPATA17->chr1:217804666-218045038:+,spermatogenesis_associated_17	H4_CENTRAL_NERVOUS_SYSTEM	0.15	0.94	0.1314	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	12	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3230	0	0	1	0.1051	0.0175	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	H4_CENTRAL_NERVOUS_SYSTEM	0	1	0.1226	FALSE	13	9	0	364	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ZNF283--CTD-3187F8.11	9	7	ZNF283	5490	chr19:44339744:+	CTD-3187F8.11	17111	chr19:51782008:+	ONLY_REF_SPLICE	YES	6	4	0.73	0.8	0.0788	0.0613	ZNF283->chr19:44331444-44353307:+,zinc_finger_protein_283,CTD-3187F8.11->chr19:51774520-51784488:+	H4_CENTRAL_NERVOUS_SYSTEM	0.73	0.8	0.1401	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	FTL--MT-CO1	10	1	FTL	1122	chr19:49468679:+	MT-CO1	6221	chrM:6546:+	INCL_NON_REF_SPLICE	YES	1459	10827	0.01	0	0.0876	0.0088	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	H4_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0964	FALSE	0	7	0	14	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	9	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.71	1	0.0788	0.0263	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	H4_CENTRAL_NERVOUS_SYSTEM	0.71	1	0.1051	FALSE	292	1546	117	613	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	SIPA1L3--ZNF253	9	0	SIPA1L3	1131	chr19:38397998:+	ZNF253	40413	chr19:19989290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0788	0	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,ZNF253->chr19:19976695-20005483:+,zinc_finger_protein_253	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0788	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	MARS--TMEM120B	1	31	MARS	10946	chr12:57898082:+	TMEM120B	22514	chr12:122186232:+	ONLY_REF_SPLICE	YES	511	48	0.06	0.4	0.0088	0.2715	MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase,TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B	H4_CENTRAL_NERVOUS_SYSTEM	0.06	0.4	0.2803	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	PDE4A--QTRT1	6	9	PDE4A	4765	chr19:10541762:+	QTRT1	27407	chr19:10817978:+	ONLY_REF_SPLICE	YES	8	46	0.65	0.25	0.0525	0.0788	PDE4A->Oncogene{Bushman},chr19:10527449-10580305:+,phosphodiesterase_4A,QTRT1->chr19:10812106-10824113:+,queuine_tRNA-ribosyltransferase_catalytic_subunit_1	H4_CENTRAL_NERVOUS_SYSTEM	0.25	0.65	0.1313	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	7	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0613	0.0263	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	H4_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.0876	FALSE	515	4851	409	746	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	AC012442.5--TTL	6	6	AC012442.5	1206	chr2:113346822:+	TTL	12921	chr2:113277859:+	ONLY_REF_SPLICE	YES	0	48	1	0.2	0.0525	0.0525	LOCAL_REARRANGEMENT:+:[47301],AC012442.5->chr2:113346617-113372008:+,TTL->Oncogene{Bushman},chr2:113239731-113299316:+,tubulin_tyrosine_ligase	H4_CENTRAL_NERVOUS_SYSTEM	0.2	1	0.105	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	CALM3--MT-ND4L	7	2	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	699	0	0.01	1	0.0613	0.0175	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	H4_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0788	FALSE	1	1	0	107	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	FTL--MT-CO1	6	1	FTL	1134	chr19:49468691:+	MT-CO1	6232	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4158	10929	0	0	0.0525	0.0088	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	H4_CENTRAL_NERVOUS_SYSTEM	0	0	0.0613	FALSE	0	7	0	14	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	6	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0525	0.0088	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0613	TRUE	274	363	69	150	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	DTWD2--RP11-259O2.1	6	0	DTWD2	4795	chr5:118264232:-	RP11-259O2.1	15984	chr5:1958696:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0525	0	DTWD2->DTW_domain_containing_2,chr5:118173017-118324240:-,RP11-259O2.1->chr5:1933977-1959290:+	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	4	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	31	37	0.26	0.23	0.035	0.0613	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	H4_CENTRAL_NERVOUS_SYSTEM	0.23	0.26	0.0963	TRUE	267	562	48	632	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ACTN1--FTL	5	2	ACTN1	30946	chr14:69341503:-	FTL	34743	chr19:49468711:+	INCL_NON_REF_SPLICE	YES	376	5991	0.02	0	0.0438	0.0175	ACTN1->actinin_alpha_1,chr14:69340860-69446157:-,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	H4_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0613	FALSE	0	0	0	3	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	4	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.35	1	0.035	0.0438	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	H4_CENTRAL_NERVOUS_SYSTEM	0.35	1	0.0788	FALSE	164	806	69	479	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	3	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.35	1	0.0263	0.0438	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	H4_CENTRAL_NERVOUS_SYSTEM	0.35	1	0.0701	FALSE	125	705	46	456	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	CTD-2528L19.4--RP11-359H18.2	4	0	CTD-2528L19.4	1174	chr19:38209916:-	RP11-359H18.2	10786	chr19:23778924:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.035	0	NUCLCLUST,CTD-2528L19.4->chr19:38180766-38210089:-,RP11-359H18.2->chr19:23778924-23780961:+	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.035	FALSE	462	80	0	856	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.035	TRUE	0	0	0	434	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	SLC1A5--MT-ND4L	4	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.035	FALSE	0	0	0	189	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	3	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	41	1	0.11	0.0263	0.0175	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	H4_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.0438	FALSE	16	356	14	466	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	URB2--HMGB1P26	3	2	URB2	7770	chr1:229773994:+	HMGB1P26	19065	chr1:229841545:-	INCL_NON_REF_SPLICE	YES	6	0	0.45	1	0.0263	0.0175	LOCAL_INVERSION:+:-:[45035],URB2->URB2_ribosome_biogenesis_2_homolog_(S._cerevisiae),chr1:229761981-229795946:+,HMGB1P26->chr1:229840981-229841608:-,high_mobility_group_box_1_pseudogene_26	H4_CENTRAL_NERVOUS_SYSTEM	0.45	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	URB2--HMGB1P26	3	2	URB2	7770	chr1:229773994:+	HMGB1P26	19073	chr1:229841537:-	INCL_NON_REF_SPLICE	YES	6	0	0.45	1	0.0263	0.0175	LOCAL_INVERSION:+:-:[45035],URB2->URB2_ribosome_biogenesis_2_homolog_(S._cerevisiae),chr1:229761981-229795946:+,HMGB1P26->chr1:229840981-229841608:-,high_mobility_group_box_1_pseudogene_26	H4_CENTRAL_NERVOUS_SYSTEM	0.45	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	3	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0263	0.0088	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0351	FALSE	462	80	0	856	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	PARP6--ANP32A	3	1	PARP6	12862	chr15:72548806:-	ANP32A	34404	chr15:69080258:-	ONLY_REF_SPLICE	YES	38	544	0.1	0.01	0.0263	0.0088	PARP6->chr15:72533522-72565340:-,poly(ADP-ribose)_polymerase_family_member_6,ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-	H4_CENTRAL_NERVOUS_SYSTEM	0.01	0.1	0.0351	FALSE	0	0	0	1	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	PPP1R16A--ADCK5	3	1	PPP1R16A	3433	chr8:145715595:+	ADCK5	21507	chr8:145615871:+	ONLY_REF_SPLICE	YES	39	12	0.09	0.25	0.0263	0.0088	LOCAL_REARRANGEMENT:+:[84895],PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,ADCK5->aarF_domain_containing_kinase_5,chr8:145596790-145618457:+	H4_CENTRAL_NERVOUS_SYSTEM	0.09	0.25	0.0351	TRUE	0	1	0	1	1	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RNLS--ATAD1	3	1	RNLS	5123	chr10:90332660:-	ATAD1	16984	chr10:89574369:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0.0088	RNLS->chr10:90033621-90344287:-,renalase,_FAD-dependent_amine_oxidase,ATAD1->ATPase_family,_AAA_domain_containing_1,chr10:89511269-89601100:-	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RP11-3L8.3--TBC1D5	3	1	RP11-3L8.3	3272	chr9:12759551:-	TBC1D5	19481	chr3:17665405:-	ONLY_REF_SPLICE	YES	0	16	1	0.2	0.0263	0.0088	RP11-3L8.3->chr9:12700100-12814344:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	H4_CENTRAL_NERVOUS_SYSTEM	0.2	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	3	0	AC104389.28	1093	chr11:5526790:-	HBE1	13750	chr11:5291386:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0263	TRUE	0	16	0	53	13	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	3	0	AC104389.28	1084	chr11:5526799:-	HBE1	13982	chr11:5291154:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0263	TRUE	0	16	0	53	13	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	AFAP1--ABLIM2	3	0	AFAP1	6167	chr4:7857193:-	ABLIM2	53571	chr4:8010829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	DPH6-AS1--RP11-684B21.1	2	4	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0175	0.035	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	H4_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0525	TRUE	17	119	17	33	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	PDE4A--QTRT1	2	3	PDE4A	3523	chr19:10531760:+	QTRT1	27407	chr19:10817978:+	ONLY_REF_SPLICE	YES	1	46	0.83	0.1	0.0175	0.0263	PDE4A->Oncogene{Bushman},chr19:10527449-10580305:+,phosphodiesterase_4A,QTRT1->chr19:10812106-10824113:+,queuine_tRNA-ribosyltransferase_catalytic_subunit_1	H4_CENTRAL_NERVOUS_SYSTEM	0.1	0.83	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ZNF484--CENPP	2	3	ZNF484	2248	chr9:95637297:-	CENPP	18818	chr9:95373596:+	ONLY_REF_SPLICE	YES	8	5	0.38	0.5	0.0175	0.0263	ZNF484->chr9:95607874-95640304:-,zinc_finger_protein_484,CENPP->centromere_protein_P,chr9:95087766-95382815:+	H4_CENTRAL_NERVOUS_SYSTEM	0.38	0.5	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ZNF350--UPK1A-AS1	2	2	ZNF350	5084	chr19:52477599:-	UPK1A-AS1	16173	chr19:36159587:-	ONLY_REF_SPLICE	YES	34	0	0.11	1	0.0175	0.0175	ZNF350->chr19:52467596-52490109:-,zinc_finger_protein_350,UPK1A-AS1->UPK1A_antisense_RNA_1,chr19:36158850-36164193:-	H4_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	AC006115.3--NAPSB	2	1	AC006115.3	8335	chr19:57301446:+	NAPSB	17284	chr19:50839962:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0175	0.0088	AC006115.3->chr19:57202054-57311014:+,NAPSB->chr19:50837053-50848024:-,napsin_B_aspartic_peptidase,_pseudogene	H4_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	MPP5--GPHN	2	1	MPP5	9521	chr14:67759436:+	GPHN	34371	chr14:67291192:+	ONLY_REF_SPLICE	YES	55	18	0.05	0.14	0.0175	0.0088	YOSHIHARA_TCGA_num_samples[BLCA:2|BRCA:1|LUAD:2],{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[59306],MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	H4_CENTRAL_NERVOUS_SYSTEM	0.05	0.14	0.0263	TRUE	0	0	0	1	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RORA--ANXA2	2	1	RORA	7133	chr15:60970856:-	ANXA2	64220	chr15:60648197:-	ONLY_REF_SPLICE	YES	1	2210	0.75	0	0.0175	0.0088	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	H4_CENTRAL_NERVOUS_SYSTEM	0	0.75	0.0263	FALSE	0	0	0	1	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	DANCR--SKI	2	0	DANCR	1530	chr4:53579126:+	SKI	11602	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	2	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0175	FALSE	56	216	12	147	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RCC1--SNX5	2	0	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0175	TRUE	0	5	0	11	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0175	FALSE	93	270	15	244	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0175	FALSE	46	201	11	112	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	SQSTM1--ENO1	2	0	SQSTM1	4149	chr5:179238682:+	ENO1	26730	chr1:8928116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	SQSTM1->chr5:179233388-179265078:+,sequestosome_1,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	ZNF283--CTD-3187F8.11	2	0	ZNF283	5490	chr19:44339744:+	CTD-3187F8.11	18658	chr19:51784088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	ZNF283->chr19:44331444-44353307:+,zinc_finger_protein_283,CTD-3187F8.11->chr19:51774520-51784488:+	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0088	0.0263	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	H4_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.0351	FALSE	407	2205	196	549	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RORA--ANXA2	1	2	RORA	13827	chr15:60884586:-	ANXA2	59082	chr15:60656722:-	ONLY_REF_SPLICE	YES	4	2073	0.43	0	0.0088	0.0175	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	H4_CENTRAL_NERVOUS_SYSTEM	0	0.43	0.0263	FALSE	2	1	0	8	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	NO	0	14	1	0.18	0.0088	0.0175	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	H4_CENTRAL_NERVOUS_SYSTEM	0.18	1	0.0263	FALSE	0	23	1	67	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	13900	chr12:24102595:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0088	0.0175	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	H4_CENTRAL_NERVOUS_SYSTEM	1	1	0.0263	TRUE	8	10	1	12	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	AC006115.3--NAPSB	1	1	AC006115.3	8335	chr19:57301446:+	NAPSB	18484	chr19:50838438:-	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0088	0.0088	AC006115.3->chr19:57202054-57311014:+,NAPSB->chr19:50837053-50848024:-,napsin_B_aspartic_peptidase,_pseudogene	H4_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	AC012442.5--TTL	1	1	AC012442.5	1206	chr2:113346822:+	TTL	15737	chr2:113286258:+	ONLY_REF_SPLICE	YES	0	50	1	0.04	0.0088	0.0088	LOCAL_REARRANGEMENT:+:[47301],AC012442.5->chr2:113346617-113372008:+,TTL->Oncogene{Bushman},chr2:113239731-113299316:+,tubulin_tyrosine_ligase	H4_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RORA--ANXA2	1	1	RORA	13827	chr15:60884586:-	ANXA2	65791	chr15:60646412:-	ONLY_REF_SPLICE	YES	4	2386	0.33	0	0.0088	0.0088	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	H4_CENTRAL_NERVOUS_SYSTEM	0	0.33	0.0176	FALSE	0	0	0	2	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	NO	2	14	0.5	0.12	0.0088	0.0088	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	H4_CENTRAL_NERVOUS_SYSTEM	0.12	0.5	0.0176	FALSE	0	5	0	14	0	FALSE	ACH-000389
H4_CENTRAL_NERVOUS_SYSTEM	TNNT1--ANP32B	1	1	TNNT1	7063	chr19:55652251:-	ANP32B	21759	chr9:100773553:+	ONLY_REF_SPLICE	NO	452	667	0	0	0.0088	0.0088	TNNT1->chr19:55644162-55660722:-,troponin_T1,_slow_skeletal_type,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	H4_CENTRAL_NERVOUS_SYSTEM	0	0	0.0176	FALSE	1	0	0	1	0	FALSE	ACH-000389
A704_KIDNEY	MT-TA--MT-TC	167	47	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.1407	0.6025	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A704_KIDNEY	1	1	2.7432	FALSE	462	80	0	856	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TN	78	39	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9999	0.4999	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A704_KIDNEY	1	1	1.4998	FALSE	369	2501	205	193	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TN	82	1	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0511	0.0128	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A704_KIDNEY	1	1	1.0639	FALSE	369	2501	205	193	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TN	43	90	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5512	1.1537	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A704_KIDNEY	1	1	1.7049	FALSE	369	2501	205	193	0	FALSE	ACH-000429
A704_KIDNEY	MT-ND6--MT-TE	54	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.6922	0.0897	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A704_KIDNEY	0.97	1	0.7819	FALSE	499	1288	110	792	0	FALSE	ACH-000429
A704_KIDNEY	TIMM23B--LINC00843	49	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.96	0.6281	0.3076	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	A704_KIDNEY	0.96	1	0.9357	TRUE	508	994	45	981	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TC	43	44	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5512	0.564	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A704_KIDNEY	1	1	1.1152	FALSE	462	80	0	856	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TC	43	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5512	0.0256	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A704_KIDNEY	1	1	0.5768	FALSE	462	80	0	856	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TN	28	37	MT-TA	1054	chrM:5602:-	MT-TN	4092	chrM:5707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3589	0.4743	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A704_KIDNEY	1	1	0.8332	FALSE	369	2501	205	193	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TN	35	1	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4487	0.0128	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A704_KIDNEY	1	1	0.4615	FALSE	369	2501	205	193	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TC	20	52	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2564	0.6666	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A704_KIDNEY	1	1	0.923	FALSE	462	80	0	856	0	FALSE	ACH-000429
A704_KIDNEY	MT-ND6--MT-TE	31	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.3974	0.0897	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A704_KIDNEY	0.95	1	0.4871	FALSE	499	1288	110	792	0	FALSE	ACH-000429
A704_KIDNEY	GBE1--RGMB	29	10	GBE1	1787	chr3:81810526:-	RGMB	27924	chr5:98106302:+	ONLY_REF_SPLICE	YES	79	2	0.33	0.95	0.3717	0.1282	GBE1->chr3:81538850-81811312:-,glucan_(1,4-alpha-),_branching_enzyme_1,RGMB->chr5:98104354-98134347:+,repulsive_guidance_molecule_family_member_b	A704_KIDNEY	0.33	0.95	0.4999	TRUE	0	0	0	1	0	TRUE	ACH-000429
A704_KIDNEY	SUZ12P--CRLF3	27	17	SUZ12P	11951	chr17:29096983:+	CRLF3	36039	chr17:29100515:-	ONLY_REF_SPLICE	YES	9	4	0.83	0.92	0.3461	0.2179	NEIGHBORS_OVERLAP:+:-:[21520],SUZ12P->chr17:29036317-29117926:+,CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3	A704_KIDNEY	0.83	0.92	0.564	FALSE	11	30	1	7	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TN	24	23	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3076	0.2948	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A704_KIDNEY	1	1	0.6024	FALSE	369	2501	205	193	0	FALSE	ACH-000429
A704_KIDNEY	MT-ND6--MT-TE	25	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.89	1	0.3205	0.2051	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A704_KIDNEY	0.89	1	0.5256	FALSE	499	1288	110	792	0	FALSE	ACH-000429
A704_KIDNEY	SUZ12P--CRLF3	22	24	SUZ12P	11951	chr17:29096983:+	CRLF3	35192	chr17:29101362:-	ONLY_REF_SPLICE	YES	9	1	0.84	0.98	0.282	0.3076	NEIGHBORS_OVERLAP:+:-:[21520],SUZ12P->chr17:29036317-29117926:+,CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3	A704_KIDNEY	0.84	0.98	0.5896	FALSE	11	30	1	7	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TC	9	49	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1154	0.6281	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A704_KIDNEY	1	1	0.7435	FALSE	462	80	0	856	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TY	20	1	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2564	0.0128	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	A704_KIDNEY	1	1	0.2692	FALSE	13	214	14	42	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TC	8	47	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1025	0.6025	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A704_KIDNEY	1	1	0.705	FALSE	462	80	0	856	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TC	8	44	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1025	0.564	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A704_KIDNEY	1	1	0.6665	FALSE	462	80	0	856	0	FALSE	ACH-000429
A704_KIDNEY	RP11-96H19.1--RP11-446N19.1	15	14	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.1923	0.1795	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A704_KIDNEY	0.94	1	0.3718	FALSE	515	4851	409	746	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TN	12	25	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1538	0.3205	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A704_KIDNEY	1	1	0.4743	FALSE	369	2501	205	193	0	FALSE	ACH-000429
A704_KIDNEY	MT-ND6--MT-TE	14	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1795	0.1795	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A704_KIDNEY	0.97	1	0.359	FALSE	499	1288	110	792	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TN	17	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2179	0.0128	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A704_KIDNEY	1	1	0.2307	FALSE	369	2501	205	193	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TN	12	17	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1538	0.2179	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A704_KIDNEY	1	1	0.3717	FALSE	369	2501	205	193	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TC	4	44	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0.564	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A704_KIDNEY	1	1	0.6153	FALSE	462	80	0	856	0	FALSE	ACH-000429
A704_KIDNEY	CRLF3--SUZ12P	12	3	CRLF3	16484	chr17:29100425:-	SUZ12P	34879	chr17:29111801:+	INCL_NON_REF_SPLICE	YES	0	11	1	0.58	0.1538	0.0385	NEIGHBORS_OVERLAP:-:+:[21520],CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3,SUZ12P->chr17:29036317-29117926:+	A704_KIDNEY	0.58	1	0.1923	FALSE	3	1	0	3	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TY	11	5	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.141	0.0641	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	A704_KIDNEY	1	1	0.2051	FALSE	13	214	14	42	0	FALSE	ACH-000429
A704_KIDNEY	MT-ND6--MT-TE	6	24	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.86	1	0.0769	0.3076	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A704_KIDNEY	0.86	1	0.3845	FALSE	499	1288	110	792	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TC	5	27	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0.3461	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A704_KIDNEY	1	1	0.4102	FALSE	462	80	0	856	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TY	10	5	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1282	0.0641	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	A704_KIDNEY	1	1	0.1923	FALSE	13	214	14	42	0	FALSE	ACH-000429
A704_KIDNEY	MT-ND6--MT-TE	3	24	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0385	0.3076	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A704_KIDNEY	0.9	1	0.3461	FALSE	499	1288	110	792	0	FALSE	ACH-000429
A704_KIDNEY	RP11-96H19.1--RP11-446N19.1	5	16	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0641	0.2051	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A704_KIDNEY	1	1	0.2692	FALSE	467	2173	244	435	0	FALSE	ACH-000429
A704_KIDNEY	MT-ND6--MT-TE	4	18	MT-ND6	1159	chrM:14515:-	MT-TE	4559	chrM:14709:-	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.0513	0.2307	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A704_KIDNEY	0.85	1	0.282	FALSE	499	1288	110	792	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TY	7	5	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0897	0.0641	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	A704_KIDNEY	1	1	0.1538	FALSE	13	214	14	42	0	FALSE	ACH-000429
A704_KIDNEY	MT-ND6--MT-TE	8	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1025	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A704_KIDNEY	1	1	0.1025	FALSE	499	1288	110	792	0	FALSE	ACH-000429
A704_KIDNEY	NRIP1--AF127936.7	8	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1025	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A704_KIDNEY	1	1	0.1025	FALSE	292	1546	117	613	0	FALSE	ACH-000429
A704_KIDNEY	SORBS1--TCTN3	7	2	SORBS1	1095	chr10:97321077:-	TCTN3	54708	chr10:97443386:-	ONLY_REF_SPLICE	YES	0	74	1	0.11	0.0897	0.0256	SORBS1->chr10:97071528-97321171:-,sorbin_and_SH3_domain_containing_1,TCTN3->chr10:97423158-97453900:-,tectonic_family_member_3	A704_KIDNEY	0.11	1	0.1153	TRUE	0	0	0	1	0	TRUE	ACH-000429
A704_KIDNEY	SPRY1--SPATA5	7	0	SPRY1	2719	chr4:124319668:+	SPATA5	26923	chr4:124177171:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0897	0	LOCAL_REARRANGEMENT:+:[77345],SPRY1->chr4:124317950-124324910:+,sprouty_RTK_signaling_antagonist_1,SPATA5->chr4:123844229-124240605:+,spermatogenesis_associated_5	A704_KIDNEY	1	1	0.0897	TRUE	0	0	0	1	0	TRUE	ACH-000429
A704_KIDNEY	MT-TA--MT-TN	6	1	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0769	0.0128	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A704_KIDNEY	1	1	0.0897	FALSE	369	2501	205	193	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TN	6	1	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0769	0.0128	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A704_KIDNEY	1	1	0.0897	FALSE	369	2501	205	193	0	FALSE	ACH-000429
A704_KIDNEY	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0769	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A704_KIDNEY	1	1	0.0769	FALSE	499	1288	110	792	0	FALSE	ACH-000429
A704_KIDNEY	MT-ND6--MT-TE	5	1	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0.0128	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A704_KIDNEY	1	1	0.0769	FALSE	499	1288	110	792	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TN	5	1	MT-TA	1059	chrM:5597:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0.0128	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A704_KIDNEY	1	1	0.0769	FALSE	369	2501	205	193	0	FALSE	ACH-000429
A704_KIDNEY	MT-ND6--MT-TE	4	1	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0.0128	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A704_KIDNEY	1	1	0.0641	FALSE	499	1288	110	792	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TN	4	1	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0.0128	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A704_KIDNEY	1	1	0.0641	FALSE	369	2501	205	193	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TY	3	4	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0.0513	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	A704_KIDNEY	1	1	0.0898	FALSE	13	214	14	42	0	FALSE	ACH-000429
A704_KIDNEY	MT-TA--MT-TY	3	4	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0.0513	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	A704_KIDNEY	1	1	0.0898	FALSE	13	214	14	42	0	FALSE	ACH-000429
A704_KIDNEY	CLIC1--RPL7	3	1	CLIC1	4985	chr6:31701613:-	RPL7	14663	chr8:74203896:-	ONLY_REF_SPLICE	YES	3122	7656	0	0	0.0385	0.0128	CLIC1->chloride_intracellular_channel_1,chr6:31698358-31707540:-,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	A704_KIDNEY	0	0	0.0513	FALSE	0	0	0	12	0	FALSE	ACH-000429
A704_KIDNEY	XKR9--LACTB2	3	1	XKR9	1174	chr8:71581773:+	LACTB2	20001	chr8:71556478:-	ONLY_REF_SPLICE	YES	3	455	0.57	0.01	0.0385	0.0128	LOCAL_INVERSION:+:-:[191],XKR9->XK_related_9,chr8:71581600-71702606:+,LACTB2->chr8:71547553-71581409:-,lactamase_beta_2	A704_KIDNEY	0.01	0.57	0.0513	FALSE	0	11	0	8	7	FALSE	ACH-000429
A704_KIDNEY	FTH1--NPM1	3	0	FTH1	1229	chr11:61734904:-	NPM1	8998	chr5:170814942:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	A704_KIDNEY	1	1	0.0385	TRUE	0	0	0	1	0	TRUE	ACH-000429
A704_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1046	chrM:14628:-	MT-TE	4575	chrM:14693:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A704_KIDNEY	1	1	0.0385	FALSE	499	1288	110	792	0	FALSE	ACH-000429
A704_KIDNEY	NRIP1--AF127936.7	3	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A704_KIDNEY	1	1	0.0385	FALSE	125	705	46	456	0	FALSE	ACH-000429
A704_KIDNEY	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.1	1	0.0256	0.0128	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A704_KIDNEY	0.1	1	0.0384	FALSE	164	806	69	479	0	FALSE	ACH-000429
A704_KIDNEY	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0.0128	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	A704_KIDNEY	1	1	0.0384	FALSE	416	2512	207	587	0	FALSE	ACH-000429
A704_KIDNEY	CAPZA2--UBB	2	0	CAPZA2	3371	chr7:116502704:+	UBB	26491	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	A704_KIDNEY	1	1	0.0256	TRUE	0	0	0	5	0	TRUE	ACH-000429
A704_KIDNEY	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	A704_KIDNEY	1	1	0.0256	FALSE	46	201	11	112	0	FALSE	ACH-000429
A704_KIDNEY	TMBIM6--SEPT2	2	0	TMBIM6	14894	chr12:50153104:+	SEPT2	37425	chr2:242287549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	TMBIM6->chr12:50101508-50158717:+,transmembrane_BAX_inhibitor_motif_containing_6,SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2	A704_KIDNEY	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000429
A704_KIDNEY	NEK6--PSMB7	1	1	NEK6	8253	chr9:127064333:+	PSMB7	31340	chr9:127119194:-	ONLY_REF_SPLICE	YES	240	464	0.01	0	0.0128	0.0128	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=9;pct=0.10%;dist=Liver=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Brain_-_Hypothalamus=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1},LOCAL_INVERSION:+:-:[159],NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7	A704_KIDNEY	0	0.01	0.0256	FALSE	1	0	0	1	0	FALSE	ACH-000429
A704_KIDNEY	NEK6--PSMB7	1	1	NEK6	2863	chr9:127023858:+	PSMB7	29279	chr9:127146935:-	ONLY_REF_SPLICE	NO	42	463	0.05	0	0.0128	0.0128	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=9;pct=0.10%;dist=Liver=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Brain_-_Hypothalamus=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1},LOCAL_INVERSION:+:-:[159],NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7	A704_KIDNEY	0	0.05	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-000429
A704_KIDNEY	NRIP1--AF127936.7	1	1	NRIP1	4648	chr21:16374501:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	38	0	0.05	1	0.0128	0.0128	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A704_KIDNEY	0.05	1	0.0256	FALSE	0	1	0	3	0	FALSE	ACH-000429
A704_KIDNEY	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0128	0.0128	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	A704_KIDNEY	1	1	0.0256	FALSE	93	270	15	244	0	FALSE	ACH-000429
22RV1_PROSTATE	GTDC1--ARHGAP15	74	42	GTDC1	11556	chr2:144966170:-	ARHGAP15	56777	chr2:144244942:+	ONLY_REF_SPLICE	YES	18	0	0.87	1	0.7641	0.4337	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.03%,GTEx_FI:{Nerve=[count:4=pct:2.4],Blood=[count:4=pct:2.3],Heart=[count:1=pct:0.4],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=27;pct=0.31%;dist=Nerve_-_Tibial=7,Whole_Blood=5,Lung=3,Artery_-_Aorta=3,Heart_-_Left_Ventricle=2,Spleen=2,Artery_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Atrial_Appendage=1},GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	22RV1_PROSTATE	0.87	1	1.1978	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	TIMM23B--LINC00843	59	53	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6092	0.5473	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	22RV1_PROSTATE	1	1	1.1565	TRUE	508	994	45	981	0	FALSE	ACH-000956
22RV1_PROSTATE	ZNF654--HMGB2	60	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6196	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	22RV1_PROSTATE	1	1	0.6196	TRUE	0	0	0	518	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND6--MT-TE	57	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.5886	0.031	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	22RV1_PROSTATE	0.97	1	0.6196	FALSE	499	1288	110	792	0	FALSE	ACH-000956
22RV1_PROSTATE	KANSL1--ARL17B	37	51	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	88	77	0.5	0.53	0.3821	0.5266	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	22RV1_PROSTATE	0.5	0.53	0.9087	TRUE	181	1564	124	196	0	FALSE	ACH-000956
22RV1_PROSTATE	TIMM23--RP11-574K11.28	45	7	TIMM23	6952	chr10:51606988:-	RP11-574K11.28	23058	chr10:75473090:-	ONLY_REF_SPLICE	YES	453	24	0.1	0.68	0.4647	0.0723	TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-574K11.28->chr10:75458909-75490245:-	22RV1_PROSTATE	0.1	0.68	0.537	TRUE	0	9	1	1	9	TRUE	ACH-000956
22RV1_PROSTATE	MT-ND6--MT-TE	40	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.413	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	22RV1_PROSTATE	1	1	0.413	FALSE	499	1288	110	792	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND6--MT-TE	25	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2582	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	22RV1_PROSTATE	1	1	0.2582	FALSE	499	1288	110	792	0	FALSE	ACH-000956
22RV1_PROSTATE	C15orf57--CBX3	19	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	68	31	0.3	0.48	0.1962	0.1033	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	22RV1_PROSTATE	0.3	0.48	0.2995	TRUE	267	562	48	632	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND4--MT-ND4L	17	0	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1755	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	22RV1_PROSTATE	1	1	0.1755	FALSE	344	827	44	306	0	FALSE	ACH-000956
22RV1_PROSTATE	NIPA2--POLA1	17	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1755	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	22RV1_PROSTATE	1	1	0.1755	TRUE	46	1352	75	139	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND4--MT-ND4L	7	33	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	16	0	0.71	1	0.0723	0.3408	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	22RV1_PROSTATE	0.71	1	0.4131	FALSE	344	826	44	306	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND6--MT-TE	14	4	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.1446	0.0413	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	22RV1_PROSTATE	0.9	1	0.1859	FALSE	499	1288	110	792	0	FALSE	ACH-000956
22RV1_PROSTATE	PRR16--CTD-2334D19.1	13	5	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	41	1	0.31	0.95	0.1342	0.0516	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	22RV1_PROSTATE	0.31	0.95	0.1858	FALSE	21	45	1	60	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND4--MT-ND4L	7	20	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	0	0.82	1	0.0723	0.2065	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	22RV1_PROSTATE	0.82	1	0.2788	FALSE	344	821	44	306	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND4--MT-ND4L	3	33	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	14	0	0.72	1	0.031	0.3408	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	22RV1_PROSTATE	0.72	1	0.3718	FALSE	344	826	44	306	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-TA--MT-TC	11	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1136	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	22RV1_PROSTATE	1	1	0.1136	FALSE	462	80	0	856	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND4--MT-ND4L	4	25	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	7	0	0.81	1	0.0413	0.2582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	22RV1_PROSTATE	0.81	1	0.2995	FALSE	344	826	44	306	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-CO3--MT-ATP6	9	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	11	12	0.54	0.52	0.0929	0.0413	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	22RV1_PROSTATE	0.52	0.54	0.1342	FALSE	189	492	56	216	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-TA--MT-TC	9	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0929	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	22RV1_PROSTATE	1	1	0.0929	FALSE	462	80	0	856	0	FALSE	ACH-000956
22RV1_PROSTATE	AP003900.6--AP000345.1	8	1	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	9	0	0.5	1	0.0826	0.0103	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	22RV1_PROSTATE	0.5	1	0.0929	TRUE	0	8	0	37	1	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND6--MT-TE	7	5	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.0723	0.0516	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	22RV1_PROSTATE	0.8	1	0.1239	FALSE	499	1288	110	792	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND1--MT-RNR2	8	0	MT-ND1	1027	chrM:3333:+	MT-RNR2	6484	chrM:3198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0826	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	22RV1_PROSTATE	1	1	0.0826	FALSE	92	21	4	61	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND4--MT-ND4L	7	1	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	41	0	0.16	1	0.0723	0.0103	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	22RV1_PROSTATE	0.16	1	0.0826	FALSE	344	826	44	306	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-CO3--MT-ATP6	7	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0723	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	22RV1_PROSTATE	1	1	0.0723	FALSE	189	492	56	216	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND4--MT-ND4L	3	15	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	126	0	0.12	1	0.031	0.1549	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	22RV1_PROSTATE	0.12	1	0.1859	FALSE	344	827	44	306	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND6--MT-TE	5	6	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	4	0	0.73	1	0.0516	0.062	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	22RV1_PROSTATE	0.73	1	0.1136	FALSE	499	1288	110	792	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND4--MT-ND4L	6	1	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1407	0	0	1	0.062	0.0103	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	22RV1_PROSTATE	0	1	0.0723	FALSE	344	827	44	306	0	FALSE	ACH-000956
22RV1_PROSTATE	AC104389.28--HBE1	4	6	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0413	0.062	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	22RV1_PROSTATE	0.83	1	0.1033	TRUE	0	48	0	65	48	FALSE	ACH-000956
22RV1_PROSTATE	ERBB2IP--RP11-305P14.1	4	6	ERBB2IP	25060	chr5:65350779:+	RP11-305P14.1	40734	chr5:65614097:+	ONLY_REF_SPLICE	YES	101	0	0.09	1	0.0413	0.062	ERBB2IP->chr5:65222303-65378377:+,RP11-305P14.1->chr5:65594296-65618772:+	22RV1_PROSTATE	0.09	1	0.1033	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	MT-ATP6--MT-CO1	5	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	14887	39782	0	0	0.0516	0.0207	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	22RV1_PROSTATE	0	0	0.0723	FALSE	183	104	9	328	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND6--MT-TE	4	5	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.75	1	0.0413	0.0516	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	22RV1_PROSTATE	0.75	1	0.0929	FALSE	499	1288	110	792	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-CO3--MT-ATP6	5	0	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	22RV1_PROSTATE	1	1	0.0516	FALSE	189	492	56	216	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND1--MT-RNR2	5	0	MT-ND1	1278	chrM:3584:+	MT-RNR2	6501	chrM:3215:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	22RV1_PROSTATE	1	1	0.0516	FALSE	91	21	4	61	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND4--MT-ND4L	5	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	22RV1_PROSTATE	1	1	0.0516	FALSE	344	821	44	306	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-TA--MT-TC	5	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	22RV1_PROSTATE	1	1	0.0516	FALSE	462	80	0	856	0	FALSE	ACH-000956
22RV1_PROSTATE	C15orf57--CBX3	3	7	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	63	31	0.14	0.24	0.031	0.0723	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	22RV1_PROSTATE	0.14	0.24	0.1033	TRUE	267	562	48	632	0	FALSE	ACH-000956
22RV1_PROSTATE	GTDC1--ARHGAP15	1	15	GTDC1	11556	chr2:144966170:-	ARHGAP15	57900	chr2:144276835:+	ONLY_REF_SPLICE	YES	18	13	0.47	0.55	0.0103	0.1549	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.03%,GTEx_FI:{Nerve=[count:4=pct:2.4],Blood=[count:4=pct:2.3],Heart=[count:1=pct:0.4],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=27;pct=0.31%;dist=Nerve_-_Tibial=7,Whole_Blood=5,Lung=3,Artery_-_Aorta=3,Heart_-_Left_Ventricle=2,Spleen=2,Artery_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Atrial_Appendage=1},GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	22RV1_PROSTATE	0.47	0.55	0.1652	TRUE	1	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	MT-ND6--MT-TE	4	3	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0413	0.031	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	22RV1_PROSTATE	0.78	1	0.0723	FALSE	499	1288	110	792	0	FALSE	ACH-000956
22RV1_PROSTATE	RP11-114H21.2--CTB-1I21.1	1	14	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	12	0	0.56	1	0.0103	0.1446	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	22RV1_PROSTATE	0.56	1	0.1549	TRUE	0	2	0	12	2	TRUE	ACH-000956
22RV1_PROSTATE	MT-CO3--MT-ATP6	3	5	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	20	11	0.29	0.42	0.031	0.0516	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	22RV1_PROSTATE	0.29	0.42	0.0826	FALSE	189	492	56	216	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-CO3--MT-ATP6	4	1	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	11	0	0.31	1	0.0413	0.0103	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	22RV1_PROSTATE	0.31	1	0.0516	FALSE	189	492	56	216	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-CO3--MT-ATP6	4	1	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0.0103	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	22RV1_PROSTATE	1	1	0.0516	FALSE	189	492	56	216	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND6--MT-TE	3	5	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.031	0.0516	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	22RV1_PROSTATE	0.8	1	0.0826	FALSE	499	1288	110	792	0	FALSE	ACH-000956
22RV1_PROSTATE	RP11-123O10.4--GRIP1	3	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.031	0.0516	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	22RV1_PROSTATE	0.89	1	0.0826	FALSE	416	2512	207	587	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	22RV1_PROSTATE	1	1	0.0413	FALSE	189	492	56	216	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-CO3--MT-ATP6	4	0	MT-CO3	1181	chrM:9387:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	22RV1_PROSTATE	1	1	0.0413	FALSE	189	492	56	216	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND4--MT-ND4L	3	4	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1209	0	0.01	1	0.031	0.0413	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	22RV1_PROSTATE	0.01	1	0.0723	FALSE	344	827	44	306	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	22RV1_PROSTATE	1	1	0.0413	FALSE	499	1288	110	792	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND3--MT-ATP8	3	2	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	276	0	0.02	1	0.031	0.0207	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	22RV1_PROSTATE	0.02	1	0.0517	FALSE	351	233	23	137	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND3--MT-ATP8	3	2	MT-ND3	1249	chrM:10307:+	MT-ATP8	4453	chrM:8472:+	INCL_NON_REF_SPLICE	YES	96	145	0.05	0.03	0.031	0.0207	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	22RV1_PROSTATE	0.03	0.05	0.0517	FALSE	351	233	23	137	0	FALSE	ACH-000956
22RV1_PROSTATE	NSMF--PNPLA7	3	2	NSMF	3924	chr9:140350863:-	PNPLA7	38611	chr9:140361925:-	ONLY_REF_SPLICE	YES	97	18	0.05	0.22	0.031	0.0207	LOCAL_REARRANGEMENT:-:[618],NSMF->NMDA_receptor_synaptonuclear_signaling_and_neuronal_migration_factor,chr9:140342022-140353786:-,PNPLA7->chr9:140354404-140444986:-,patatin_like_phospholipase_domain_containing_7	22RV1_PROSTATE	0.05	0.22	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	MT-ND3--MT-ATP8	3	1	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	NO	158	0	0.02	1	0.031	0.0103	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	22RV1_PROSTATE	0.02	1	0.0413	FALSE	351	233	23	137	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND4--MT-ND4L	3	1	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	776	0	0.01	1	0.031	0.0103	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	22RV1_PROSTATE	0.01	1	0.0413	FALSE	344	827	44	306	0	FALSE	ACH-000956
22RV1_PROSTATE	CTD-2337A12.1--CAST	3	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	22RV1_PROSTATE	1	1	0.031	TRUE	347	1186	183	220	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	22RV1_PROSTATE	1	1	0.031	FALSE	189	492	56	216	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-CO3--MT-ATP6	3	0	MT-CO3	1396	chrM:9602:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	22RV1_PROSTATE	1	1	0.031	FALSE	189	492	56	216	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND1--MT-RNR2	3	0	MT-ND1	1267	chrM:3573:+	MT-RNR2	6490	chrM:3204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	22RV1_PROSTATE	1	1	0.031	FALSE	92	21	4	61	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND4--MT-ND4L	3	0	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	22RV1_PROSTATE	1	1	0.031	FALSE	344	827	44	306	0	FALSE	ACH-000956
22RV1_PROSTATE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	22RV1_PROSTATE	1	1	0.031	FALSE	499	1288	110	792	0	FALSE	ACH-000956
22RV1_PROSTATE	TMED2--SLC35E1	3	0	TMED2	3282	chr12:124071359:+	SLC35E1	20842	chr19:16664511:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	TMED2->chr12:124069078-124083116:+,transmembrane_p24_trafficking_protein_2,SLC35E1->chr19:16660642-16683193:-,solute_carrier_family_35_member_E1	22RV1_PROSTATE	1	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	RP11-120D5.1--MID1	1	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	3	5	0.7	0.58	0.0103	0.062	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	22RV1_PROSTATE	0.58	0.7	0.0723	FALSE	16	356	14	466	0	FALSE	ACH-000956
22RV1_PROSTATE	CTD-2008L17.1--RP11-456O19.2	2	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	2	1	0.6	0.75	0.0207	0.0103	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	22RV1_PROSTATE	0.6	0.75	0.031	FALSE	20	187	4	79	0	FALSE	ACH-000956
22RV1_PROSTATE	AP003900.6--AP000345.1	2	0	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	22RV1_PROSTATE	1	1	0.0207	TRUE	4	17	0	31	0	FALSE	ACH-000956
22RV1_PROSTATE	CALM2--PCBP1-AS1	2	0	CALM2	1161	chr2:47403580:-	PCBP1-AS1	18160	chr2:70312756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	CCDC41--PCCA	2	0	CCDC41	5431	chr12:94805473:-	PCCA	34695	chr13:100807233:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	CCDC41->chr12:94700225-94853764:-,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	CTD-2008L17.1--RP11-456O19.2	2	0	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	22RV1_PROSTATE	1	1	0.0207	FALSE	33	240	4	98	0	FALSE	ACH-000956
22RV1_PROSTATE	FRS2--RAB3IP	2	0	FRS2	1182	chr12:69864310:+	RAB3IP	25899	chr12:70149164:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	22RV1_PROSTATE	1	1	0.0207	TRUE	0	2	0	3	1	TRUE	ACH-000956
22RV1_PROSTATE	IMMP2L--NCAPG2	2	0	IMMP2L	4976	chr7:111127294:-	NCAPG2	53097	chr7:158424409:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,NCAPG2->chr7:158424003-158497520:-,non-SMC_condensin_II_complex_subunit_G2	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	22RV1_PROSTATE	1	1	0.0207	TRUE	3	14	2	43	0	FALSE	ACH-000956
22RV1_PROSTATE	NAA25--BCAS3	2	0	NAA25	1307	chr12:112546520:-	BCAS3	45606	chr17:58885365:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	NFYC--SLC25A13	2	0	NFYC	1220	chr1:41157539:+	SLC25A13	31269	chr7:95864229:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	NFYC->chr1:41157320-41237275:+,nuclear_transcription_factor_Y_subunit_gamma,SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	RC3H1--DYM	2	0	RC3H1	2583	chr1:173961893:-	DYM	55750	chr18:46784863:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	RC3H1->chr1:173900352-173991435:-,ring_finger_and_CCCH-type_domains_1,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	RP11-255H23.2--SET	2	0	RP11-255H23.2	1191	chr19:23945936:+	SET	14561	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	RP11-255H23.2->chr19:23945746-24016116:+,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	RP13-16H11.2--PPP2R5C	2	0	RP13-16H11.2	2132	chr10:26957336:-	PPP2R5C	36303	chr14:102375926:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	RP13-16H11.2->chr10:26953135-26965088:-,PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	TECPR1--GANAB	2	0	TECPR1	3582	chr7:97875234:-	GANAB	30207	chr11:62407203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	22RV1_PROSTATE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000956
22RV1_PROSTATE	WTAPP1--RUVBL1	2	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	22RV1_PROSTATE	1	1	0.0207	TRUE	9	252	6	66	0	FALSE	ACH-000956
22RV1_PROSTATE	TIMM23B--LINC00843	1	3	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	2	1	0.67	0.0103	0.031	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	22RV1_PROSTATE	0.67	1	0.0413	TRUE	62	24	1	171	0	FALSE	ACH-000956
22RV1_PROSTATE	ELOVL5--GCLC	1	2	ELOVL5	1333	chr6:53213615:-	GCLC	25781	chr6:53385758:-	ONLY_REF_SPLICE	YES	663	548	0	0.01	0.0103	0.0207	ELOVL5->ELOVL_fatty_acid_elongase_5,Oncogene{Bushman},chr6:53132196-53213947:-,GCLC->chr6:53362139-53481768:-,glutamate-cysteine_ligase_catalytic_subunit	22RV1_PROSTATE	0	0.01	0.031	FALSE	0	0	0	1	0	FALSE	ACH-000956
22RV1_PROSTATE	PRR16--CTD-2334D19.1	1	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	81	1	0.04	0.75	0.0103	0.0207	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	22RV1_PROSTATE	0.04	0.75	0.031	FALSE	56	216	12	147	0	FALSE	ACH-000956
22RV1_PROSTATE	RP11-35G9.3--NARS	1	2	RP11-35G9.3	1217	chr18:55297750:+	NARS	17885	chr18:55283207:-	ONLY_REF_SPLICE	YES	50	805	0.06	0	0.0103	0.0207	LOCAL_INVERSION:+:-:[8089],RP11-35G9.3->chr18:55297534-55405276:+,NARS->asparaginyl-tRNA_synthetase,chr18:55267888-55289445:-	22RV1_PROSTATE	0	0.06	0.031	FALSE	0	0	0	3	0	FALSE	ACH-000956
22RV1_PROSTATE	MKI67--WDR11	1	1	MKI67	1810	chr10:129923840:-	WDR11	44061	chr10:122643292:+	ONLY_REF_SPLICE	NO	135	132	0.01	0.01	0.0103	0.0103	MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67,WDR11->Oncogene{Bushman},WD_repeat_domain_11,chr10:122610687-122669036:+	22RV1_PROSTATE	0.01	0.01	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000956
22RV1_PROSTATE	NUP160--BMP1	1	1	NUP160	1337	chr11:47869771:-	BMP1	54552	chr8:22059316:+	ONLY_REF_SPLICE	YES	53	33	0.04	0.06	0.0103	0.0103	NUP160->chr11:47799639-47870107:-,nucleoporin_160kDa,BMP1->bone_morphogenetic_protein_1,chr8:22022249-22069839:+	22RV1_PROSTATE	0.04	0.06	0.0206	TRUE	0	0	0	1	0	FALSE	ACH-000956
22RV1_PROSTATE	PTBP3--PTGR1	1	1	PTBP3	1198	chr9:115095750:-	PTGR1	31030	chr9:114348445:-	ONLY_REF_SPLICE	YES	366	360	0.01	0.01	0.0103	0.0103	PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1	22RV1_PROSTATE	0.01	0.01	0.0206	FALSE	0	0	0	3	0	FALSE	ACH-000956
22RV1_PROSTATE	RP11-155G15.2--RP11-1E3.1	1	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	7991	chr5:96856933:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0103	0.0103	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	22RV1_PROSTATE	1	1	0.0206	FALSE	0	1	1	12	0	FALSE	ACH-000956
22RV1_PROSTATE	RP11-46A10.5--GPBP1L1	1	1	RP11-46A10.5	1365	chr1:180945254:-	GPBP1L1	13005	chr1:46124814:-	ONLY_REF_SPLICE	YES	0	422	1	0	0.0103	0.0103	RP11-46A10.5->chr1:180913178-180945618:-,GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-	22RV1_PROSTATE	0	1	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000956
22RV1_PROSTATE	SGCZ--TUSC3	1	1	SGCZ	1755	chr8:15095094:-	TUSC3	17839	chr8:15480589:+	ONLY_REF_SPLICE	YES	17	235	0.11	0.01	0.0103	0.0103	SGCZ->chr8:13947373-15095848:-,sarcoglycan_zeta,TUSC3->chr8:15274724-15624158:+,tumor_suppressor_candidate_3	22RV1_PROSTATE	0.01	0.11	0.0206	FALSE	0	1	0	1	1	FALSE	ACH-000956
NCIH1650_LUNG	RPL30--C8orf47	314	20	RPL30	2123	chr8:99057575:-	C8orf47	12057	chr8:99101304:+	ONLY_REF_SPLICE	YES	164	6	0.67	0.98	3.1654	0.2016	LOCAL_INVERSION:-:+:[17842],RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,C8orf47->chr8:99076539-99105838:+	NCIH1650_LUNG	0.67	0.98	3.367	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	RPL30--C8orf47	204	142	RPL30	2527	chr8:99057171:-	C8orf47	12057	chr8:99101304:+	ONLY_REF_SPLICE	YES	1287	6	0.21	0.98	2.0565	1.4315	LOCAL_INVERSION:-:+:[17842],RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,C8orf47->chr8:99076539-99105838:+	NCIH1650_LUNG	0.21	0.98	3.488	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	TIMM23B--LINC00843	48	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.4839	0.1915	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1650_LUNG	0.99	1	0.6754	TRUE	508	994	45	981	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-TA--MT-TC	37	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.373	0.0202	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1650_LUNG	1	1	0.3932	FALSE	462	80	0	856	0	FALSE	ACH-000035
NCIH1650_LUNG	RPL30--C8orf47	1	143	RPL30	2643	chr8:99057055:-	C8orf47	12057	chr8:99101304:+	ONLY_REF_SPLICE	YES	1365	6	0.1	0.96	0.0101	1.4416	LOCAL_INVERSION:-:+:[17842],RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,C8orf47->chr8:99076539-99105838:+	NCIH1650_LUNG	0.1	0.96	1.4517	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	PLXDC1--TAF13	33	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3327	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH1650_LUNG	1	1	0.3327	TRUE	7	10	0	216	0	FALSE	ACH-000035
NCIH1650_LUNG	TIMM23--RP11-464F9.1	30	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	181	2	0.15	0.94	0.3024	0.0202	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1650_LUNG	0.15	0.94	0.3226	TRUE	519	3926	326	965	0	FALSE	ACH-000035
NCIH1650_LUNG	GAPVD1--GLE1	24	23	GAPVD1	1166	chr9:128024238:+	GLE1	44849	chr9:131271155:+	ONLY_REF_SPLICE	YES	41	103	0.53	0.31	0.2419	0.2319	GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	NCIH1650_LUNG	0.31	0.53	0.4738	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ND4L	13	67	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	7127	0	0.01	1	0.1311	0.6754	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1650_LUNG	0.01	1	0.8065	FALSE	344	827	44	306	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ND4L	3	97	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	715	0	0.12	1	0.0302	0.9779	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1650_LUNG	0.12	1	1.0081	FALSE	344	827	44	306	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ND4L	3	94	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	22	0	0.82	1	0.0302	0.9476	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1650_LUNG	0.82	1	0.9778	FALSE	344	826	44	306	0	FALSE	ACH-000035
NCIH1650_LUNG	RPL30--C8orf47	26	2	RPL30	2123	chr8:99057575:-	C8orf47	14011	chr8:99105449:+	ONLY_REF_SPLICE	YES	164	236	0.15	0.11	0.2621	0.0202	LOCAL_INVERSION:-:+:[17842],RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,C8orf47->chr8:99076539-99105838:+	NCIH1650_LUNG	0.11	0.15	0.2823	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	MKL1--PHF5A	20	16	MKL1	3549	chr22:40948110:-	PHF5A	23840	chr22:41864151:-	ONLY_REF_SPLICE	YES	80	44	0.31	0.45	0.2016	0.1613	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,PHF5A->PHD_finger_protein_5A,chr22:41855721-41864729:-	NCIH1650_LUNG	0.31	0.45	0.3629	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ND4L	5	76	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	9	0	0.9	1	0.0504	0.7662	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1650_LUNG	0.9	1	0.8166	FALSE	344	826	44	306	0	FALSE	ACH-000035
NCIH1650_LUNG	RPL30--C8orf47	14	35	RPL30	2355	chr8:99057343:-	C8orf47	12057	chr8:99101304:+	INCL_NON_REF_SPLICE	YES	279	6	0.15	0.89	0.1411	0.3528	LOCAL_INVERSION:-:+:[17842],RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,C8orf47->chr8:99076539-99105838:+	NCIH1650_LUNG	0.15	0.89	0.4939	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	GAPVD1--ODF2	14	34	GAPVD1	3365	chr9:128031263:+	ODF2	66330	chr9:131262346:+	ONLY_REF_SPLICE	YES	45	239	0.52	0.17	0.1411	0.3428	GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,ODF2->chr9:131217465-131263571:+,outer_dense_fiber_of_sperm_tails_2	NCIH1650_LUNG	0.17	0.52	0.4839	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	NIPA2--POLA1	22	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2218	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	NCIH1650_LUNG	1	1	0.2218	TRUE	46	1352	75	139	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ND4L	4	62	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	7	0	0.9	1	0.0403	0.625	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1650_LUNG	0.9	1	0.6653	FALSE	344	821	44	306	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ND4L	3	66	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	95	0	0.42	1	0.0302	0.6653	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1650_LUNG	0.42	1	0.6955	FALSE	344	827	44	306	0	FALSE	ACH-000035
NCIH1650_LUNG	NUP214--NTMT1	16	6	NUP214	15686	chr9:134022971:+	NTMT1	52589	chr9:132394929:+	ONLY_REF_SPLICE	YES	50	205	0.31	0.1	0.1613	0.0605	NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,NTMT1->N-terminal_Xaa-Pro-Lys_N-methyltransferase_1,chr9:132371163-132398209:+	NCIH1650_LUNG	0.1	0.31	0.2218	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	GAPVD1--ODF2	10	22	GAPVD1	1166	chr9:128024238:+	ODF2	66330	chr9:131262346:+	ONLY_REF_SPLICE	YES	41	239	0.44	0.12	0.1008	0.2218	GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,ODF2->chr9:131217465-131263571:+,outer_dense_fiber_of_sperm_tails_2	NCIH1650_LUNG	0.12	0.44	0.3226	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	MT-ND6--MT-TE	15	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1512	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1650_LUNG	1	1	0.1512	FALSE	499	1288	110	792	0	FALSE	ACH-000035
NCIH1650_LUNG	RP11-96H19.1--RP11-446N19.1	13	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1311	0.0302	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1650_LUNG	1	1	0.1613	FALSE	515	4851	409	746	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND6--MT-TE	13	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1311	0.0101	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1650_LUNG	1	1	0.1412	FALSE	499	1288	110	792	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ND4L	6	25	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	13126	0	0	1	0.0605	0.252	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1650_LUNG	0	1	0.3125	FALSE	328	800	43	304	0	FALSE	ACH-000035
NCIH1650_LUNG	GAPVD1--GLE1	5	28	GAPVD1	3365	chr9:128031263:+	GLE1	44849	chr9:131271155:+	ONLY_REF_SPLICE	YES	45	103	0.42	0.24	0.0504	0.2823	GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	NCIH1650_LUNG	0.24	0.42	0.3327	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	GAPVD1--ODF2	4	29	GAPVD1	2316	chr9:128025979:+	ODF2	66330	chr9:131262346:+	ONLY_REF_SPLICE	YES	45	239	0.42	0.12	0.0403	0.2923	GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+,ODF2->chr9:131217465-131263571:+,outer_dense_fiber_of_sperm_tails_2	NCIH1650_LUNG	0.12	0.42	0.3326	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	MT-ND6--MT-TE	9	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0907	0.0806	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1650_LUNG	0.94	1	0.1713	FALSE	499	1288	110	792	0	FALSE	ACH-000035
NCIH1650_LUNG	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1109	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1650_LUNG	1	1	0.1109	TRUE	0	0	0	434	0	FALSE	ACH-000035
NCIH1650_LUNG	NRIP1--AF127936.7	10	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.1008	0.0302	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1650_LUNG	0.93	1	0.131	FALSE	292	1546	117	613	0	FALSE	ACH-000035
NCIH1650_LUNG	RP11-123O10.4--GRIP1	9	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0907	0.0202	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1650_LUNG	1	1	0.1109	FALSE	416	2512	207	587	0	FALSE	ACH-000035
NCIH1650_LUNG	MKL1--PHF5A	4	21	MKL1	4771	chr22:40929594:-	PHF5A	23840	chr22:41864151:-	ONLY_REF_SPLICE	YES	105	44	0.19	0.36	0.0403	0.2117	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,PHF5A->PHD_finger_protein_5A,chr22:41855721-41864729:-	NCIH1650_LUNG	0.19	0.36	0.252	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	MKL1--PHF5A	4	15	MKL1	3549	chr22:40948110:-	PHF5A	24373	chr22:41863618:-	ONLY_REF_SPLICE	YES	80	236	0.19	0.07	0.0403	0.1512	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,PHF5A->PHD_finger_protein_5A,chr22:41855721-41864729:-	NCIH1650_LUNG	0.07	0.19	0.1915	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	MKL1--PHF5A	3	19	MKL1	4771	chr22:40929594:-	PHF5A	24373	chr22:41863618:-	ONLY_REF_SPLICE	YES	105	236	0.17	0.09	0.0302	0.1915	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,PHF5A->PHD_finger_protein_5A,chr22:41855721-41864729:-	NCIH1650_LUNG	0.09	0.17	0.2217	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ND4L	6	6	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	91	0	0.12	1	0.0605	0.0605	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1650_LUNG	0.12	1	0.121	FALSE	344	827	44	306	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ATP8	7	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	13405	45	0	0.15	0.0706	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1650_LUNG	0	0.15	0.0807	FALSE	231	204	14	283	0	FALSE	ACH-000035
NCIH1650_LUNG	FTH1--ACTB	6	4	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	4916	2	0	0.83	0.0605	0.0403	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH1650_LUNG	0	0.83	0.1008	TRUE	1	0	0	97	0	FALSE	ACH-000035
NCIH1650_LUNG	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0706	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1650_LUNG	1	1	0.0706	FALSE	13	9	0	364	0	FALSE	ACH-000035
NCIH1650_LUNG	NRIP1--AF127936.7	5	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.65	1	0.0504	0.0806	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1650_LUNG	0.65	1	0.131	FALSE	164	806	69	479	0	FALSE	ACH-000035
NCIH1650_LUNG	CALM3--MT-ND4L	5	7	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1938	0	0.01	1	0.0504	0.0706	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1650_LUNG	0.01	1	0.121	FALSE	1	1	0	107	0	FALSE	ACH-000035
NCIH1650_LUNG	RPL30--C8orf47	5	6	RPL30	2527	chr8:99057171:-	C8orf47	14011	chr8:99105449:+	ONLY_REF_SPLICE	YES	1287	236	0.01	0.04	0.0504	0.0605	LOCAL_INVERSION:-:+:[17842],RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,C8orf47->chr8:99076539-99105838:+	NCIH1650_LUNG	0.01	0.04	0.1109	TRUE	0	0	0	1	0	FALSE	ACH-000035
NCIH1650_LUNG	MKL1--PHF5A	1	21	MKL1	5920	chr22:40915468:-	PHF5A	23840	chr22:41864151:-	ONLY_REF_SPLICE	YES	106	44	0.17	0.33	0.0101	0.2117	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,PHF5A->PHD_finger_protein_5A,chr22:41855721-41864729:-	NCIH1650_LUNG	0.17	0.33	0.2218	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ATP8	5	5	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	16077	0	0	1	0.0504	0.0504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1650_LUNG	0	1	0.1008	FALSE	231	217	16	283	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ATP8	6	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14936	3	0	0.7	0.0605	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1650_LUNG	0	0.7	0.0706	FALSE	231	205	14	283	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ATP8	4	9	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2641	33	0	0.28	0.0403	0.0907	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1650_LUNG	0	0.28	0.131	FALSE	216	209	16	281	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ATP8	6	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	13314	2	0	0.78	0.0605	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1650_LUNG	0	0.78	0.0706	FALSE	230	193	14	283	0	FALSE	ACH-000035
NCIH1650_LUNG	PHTF2--POR	5	4	PHTF2	1167	chr7:77428288:+	POR	39281	chr7:75583307:+	ONLY_REF_SPLICE	YES	63	4	0.12	0.69	0.0504	0.0403	PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2,POR->chr7:75528518-75616173:+,cytochrome_p450_oxidoreductase	NCIH1650_LUNG	0.12	0.69	0.0907	TRUE	0	1	0	1	1	TRUE	ACH-000035
NCIH1650_LUNG	MKL1--PHF5A	1	19	MKL1	5920	chr22:40915468:-	PHF5A	24373	chr22:41863618:-	ONLY_REF_SPLICE	YES	106	236	0.16	0.08	0.0101	0.1915	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,PHF5A->PHD_finger_protein_5A,chr22:41855721-41864729:-	NCIH1650_LUNG	0.08	0.16	0.2016	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	MT-ATP6--MT-CO1	4	7	MT-ATP6	1265	chrM:8791:+	MT-CO1	5019	chrM:6241:+	INCL_NON_REF_SPLICE	YES	17884	18787	0	0	0.0403	0.0706	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1650_LUNG	0	0	0.1109	FALSE	183	104	9	328	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ATP6--MT-CO1	5	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13052	22308	0	0	0.0504	0.0302	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1650_LUNG	0	0	0.0806	FALSE	183	104	9	328	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ATP8	5	3	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	16142	0	0	1	0.0504	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1650_LUNG	0	1	0.0806	FALSE	231	217	16	283	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-TA--MT-TC	5	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0504	0.0202	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1650_LUNG	1	1	0.0706	FALSE	462	80	0	856	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ATP8	4	5	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15652	33	0	0.21	0.0403	0.0504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1650_LUNG	0	0.21	0.0907	FALSE	231	217	16	283	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ND4L	4	5	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	34	0	0.21	1	0.0403	0.0504	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1650_LUNG	0.21	1	0.0907	FALSE	344	826	44	306	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND6--MT-TE	3	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0302	0.0907	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1650_LUNG	0.92	1	0.1209	FALSE	499	1288	110	792	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND6--MT-TE	3	9	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.0302	0.0907	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1650_LUNG	0.8	1	0.1209	FALSE	499	1288	110	792	0	FALSE	ACH-000035
NCIH1650_LUNG	NCOR2--UBC	5	1	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	159	1	0.04	0.0504	0.0101	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH1650_LUNG	0.04	1	0.0605	TRUE	145	312	16	51	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ATP6--MT-CO1	5	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0504	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1650_LUNG	1	1	0.0504	FALSE	183	104	9	328	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ATP6--MT-CO1	3	6	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3566	22963	0	0	0.0302	0.0605	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1650_LUNG	0	0	0.0907	FALSE	183	104	9	328	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ND4L	3	6	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	91	0	0.09	1	0.0302	0.0605	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1650_LUNG	0.09	1	0.0907	FALSE	344	827	44	306	0	FALSE	ACH-000035
NCIH1650_LUNG	NRIP1--AF127936.7	3	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.53	1	0.0302	0.0605	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1650_LUNG	0.53	1	0.0907	FALSE	125	705	46	456	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	16755	390	0	0.02	0.0302	0.0504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1650_LUNG	0	0.02	0.0806	FALSE	231	217	16	283	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	15652	149	0	0.05	0.0302	0.0504	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1650_LUNG	0	0.05	0.0806	FALSE	231	217	16	283	0	FALSE	ACH-000035
NCIH1650_LUNG	AES--MTATP6P1	4	0	AES	2887	chr19:3061219:-	MTATP6P1	12247	chr1:569327:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	AES->amino-terminal_enhancer_of_split,chr19:3052908-3063105:-,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1650_LUNG	1	1	0.0403	TRUE	0	0	0	3	0	TRUE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	16696	723	0	0.01	0.0302	0.0403	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1650_LUNG	0	0.01	0.0705	FALSE	231	217	16	283	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16231	33	0	0.17	0.0302	0.0403	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1650_LUNG	0	0.17	0.0705	FALSE	231	217	16	283	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1779	chrM:11538:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16591	33	0	0.17	0.0302	0.0403	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1650_LUNG	0	0.17	0.0705	FALSE	231	217	16	283	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1650_LUNG	1	1	0.0403	FALSE	499	1288	110	792	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.0302	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1650_LUNG	1	1	0.0604	FALSE	462	80	0	856	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	17417	1512	0	0	0.0302	0.0202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1650_LUNG	0	0	0.0504	FALSE	231	205	14	283	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	17963	0	0	1	0.0302	0.0202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1650_LUNG	0	1	0.0504	FALSE	231	216	16	283	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND6--MT-TE	3	2	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.0202	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1650_LUNG	1	1	0.0504	FALSE	499	1288	110	792	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10498	22582	0	0	0.0302	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1650_LUNG	0	0	0.0403	FALSE	183	104	9	328	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1279	chrM:11038:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	14977	2	0	0.67	0.0302	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1650_LUNG	0	0.67	0.0403	FALSE	231	205	14	283	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1650_LUNG	1	1	0.0302	FALSE	183	104	9	328	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1650_LUNG	1	1	0.0302	FALSE	344	821	44	306	0	FALSE	ACH-000035
NCIH1650_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1650_LUNG	1	1	0.0302	FALSE	499	1288	110	792	0	FALSE	ACH-000035
NCIH1650_LUNG	PRKCSH--MT-ATP8	3	0	PRKCSH	1898	chr19:11547006:+	MT-ATP8	15791	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PRKCSH->chr19:11546109-11561783:+,protein_kinase_C_substrate_80K-H,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1650_LUNG	1	1	0.0302	FALSE	0	0	0	1	0	FALSE	ACH-000035
NCIH1650_LUNG	TRIP4--KIAA0101	3	0	TRIP4	1217	chr15:64680163:+	KIAA0101	23828	chr15:64673237:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_INVERSION:+:-:[61],TRIP4->chr15:64679947-64747502:+,thyroid_hormone_receptor_interactor_4,KIAA0101->KIAA0101,chr15:64657193-64679886:-	NCIH1650_LUNG	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	RP11-269F21.3--TIFA	2	3	RP11-269F21.3	2258	chr4:112750083:-	TIFA	8941	chr4:113199590:-	ONLY_REF_SPLICE	YES	27	82	0.16	0.06	0.0202	0.0302	RP11-269F21.3->chr4:112748037-112993854:-,TIFA->TRAF_interacting_protein_with_forkhead_associated_domain,chr4:113195698-113207059:-	NCIH1650_LUNG	0.06	0.16	0.0504	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	SRCIN1--RPL23	2	2	SRCIN1	3683	chr17:36734743:-	RPL23	33516	chr17:37009358:-	ONLY_REF_SPLICE	YES	5	54	0.44	0.07	0.0202	0.0202	SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-,RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23	NCIH1650_LUNG	0.07	0.44	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	NCOR2--UBC	2	1	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	101	159	0.03	0.02	0.0202	0.0101	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH1650_LUNG	0.02	0.03	0.0303	TRUE	52	148	13	33	0	FALSE	ACH-000035
NCIH1650_LUNG	NCOR2--UBC	2	1	NCOR2	11484	chr12:124934361:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	102	159	0.03	0.02	0.0202	0.0101	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH1650_LUNG	0.02	0.03	0.0303	TRUE	12	15	2	11	0	FALSE	ACH-000035
NCIH1650_LUNG	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	73	0.75	0.04	0.0202	0.0101	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1650_LUNG	0.04	0.75	0.0303	FALSE	16	356	14	466	0	FALSE	ACH-000035
NCIH1650_LUNG	C10orf137--GLS	2	0	C10orf137	11238	chr10:127422752:+	GLS	40871	chr2:191784941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	C10orf137->Oncogene{Bushman},chr10:127408084-127452712:+,GLS->chr2:191745553-191830278:+,glutaminase	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	CAPZB--UBR4	2	0	CAPZB	1137	chr1:19811930:-	UBR4	105513	chr1:19408067:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4	NCIH1650_LUNG	1	1	0.0202	TRUE	0	1	0	1	1	TRUE	ACH-000035
NCIH1650_LUNG	IFIT3--AMBRA1	2	0	IFIT3	1185	chr10:91087835:+	AMBRA1	11789	chr11:46570050:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	IFIT3->chr10:91087651-91100728:+,interferon_induced_protein_with_tetratricopeptide_repeats_3,AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	IFT80--MAN1A2	2	0	IFT80	1735	chr3:160116934:-	MAN1A2	37582	chr1:117944808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	IFT80->chr3:159974774-160117668:-,intraflagellar_transport_80,MAN1A2->chr1:117910071-118071494:+,mannosidase_alpha_class_1A_member_2	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	INTS7--HIBCH	2	0	INTS7	7492	chr1:212179981:-	HIBCH	49164	chr2:191077801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	INTS7->chr1:212113741-212208884:-,integrator_complex_subunit_7,HIBCH->3-hydroxyisobutyryl-CoA_hydrolase,chr2:191054461-191208919:-	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	MKL1--PHF5A	1	4	MKL1	3549	chr22:40948110:-	PHF5A	25540	chr22:41856491:-	ONLY_REF_SPLICE	YES	80	435	0.06	0.01	0.0101	0.0403	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,PHF5A->PHD_finger_protein_5A,chr22:41855721-41864729:-	NCIH1650_LUNG	0.01	0.06	0.0504	FALSE	0	0	0	1	0	FALSE	ACH-000035
NCIH1650_LUNG	RECQL5--MRPL38	2	0	RECQL5	12732	chr17:73635949:-	MRPL38	28097	chr17:73900800:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	RECQL5->Oncogene{Bushman},RecQ_like_helicase_5,chr17:73622925-73663269:-,MRPL38->chr17:73894724-73905899:-,mitochondrial_ribosomal_protein_L38	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	RIN2--CHMP4B	2	0	RIN2	11845	chr20:19956431:+	CHMP4B	22648	chr20:32436273:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	RIN2->Ras_and_Rab_interactor_2,chr20:19867165-19983101:+,CHMP4B->charged_multivesicular_body_protein_4B,chr20:32399110-32442172:+	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	SERF2--GARS	2	0	SERF2	5397	chr15:44085281:+	GARS	33241	chr7:30668176:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	SERF2->chr15:44069285-44094787:+,small_EDRK-rich_factor_2,GARS->chr7:30634297-30673649:+,glycyl-tRNA_synthetase	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	SMYD4--PLIN2	2	0	SMYD4	3432	chr17:1731155:-	PLIN2	24962	chr9:19126446:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-,PLIN2->chr9:19108373-19149288:-,perilipin_2	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	TGFBR2--AZI2	2	0	TGFBR2	7853	chr3:30715738:+	AZI2	18697	chr3:28382113:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx&tcga_normals:1/3694=0.03%,TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,AZI2->5-azacytidine_induced_2,chr3:28356494-28390618:-	NCIH1650_LUNG	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000035
NCIH1650_LUNG	ACACA--DUSP14	1	1	ACACA	45310	chr17:35578645:-	DUSP14	82791	chr17:35870779:+	ONLY_REF_SPLICE	YES	50	14	0.04	0.12	0.0101	0.0101	LOCAL_INVERSION:-:+:[83028],ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,DUSP14->chr17:35849937-35873603:+,dual_specificity_phosphatase_14	NCIH1650_LUNG	0.04	0.12	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000035
NCIH1650_LUNG	AKT3--ADSS	1	1	AKT3	20102	chr1:243776973:-	ADSS	38307	chr1:244601070:-	ONLY_REF_SPLICE	YES	83	123	0.02	0.02	0.0101	0.0101	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,ADSS->adenylosuccinate_synthase,chr1:244571796-244615436:-	NCIH1650_LUNG	0.02	0.02	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000035
NCIH1650_LUNG	MED13L--PSMB1	1	1	MED13L	6460	chr12:116534474:-	PSMB1	45211	chr6:170858201:-	ONLY_REF_SPLICE	YES	34	1382	0.06	0	0.0101	0.0101	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	NCIH1650_LUNG	0	0.06	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000035
NCIH1650_LUNG	NCOR2--UBC	1	1	NCOR2	21671	chr12:124882665:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	106	159	0.02	0.01	0.0101	0.0101	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH1650_LUNG	0.01	0.02	0.0202	FALSE	30	26	0	16	0	FALSE	ACH-000035
NCIH1650_LUNG	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	8	5	0.2	0.29	0.0101	0.0101	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1650_LUNG	0.2	0.29	0.0202	FALSE	7	44	2	41	0	FALSE	ACH-000035
NCIH1650_LUNG	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	7	5	0.22	0.29	0.0101	0.0101	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1650_LUNG	0.22	0.29	0.0202	FALSE	8	57	1	47	0	FALSE	ACH-000035
NCIH1650_LUNG	RP11-120D5.1--MID1	1	1	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	73	1	0.03	0.0101	0.0101	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1650_LUNG	0.03	1	0.0202	FALSE	2	31	0	60	0	FALSE	ACH-000035
NCIH1650_LUNG	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	1	35	0.67	0.05	0.0101	0.0101	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1650_LUNG	0.05	0.67	0.0202	FALSE	0	23	1	67	0	FALSE	ACH-000035
NCIH1650_LUNG	SLC25A17--DDX17	1	1	SLC25A17	1205	chr22:41215199:-	DDX17	22536	chr22:38897285:-	ONLY_REF_SPLICE	YES	196	221	0.01	0.01	0.0101	0.0101	SLC25A17->chr22:41165634-41215403:-,solute_carrier_family_25_member_17,DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-	NCIH1650_LUNG	0.01	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000035
NCIH1650_LUNG	TMEM245--PEG10	1	1	TMEM245	3831	chr9:111868788:-	PEG10	30893	chr7:94292646:+	ONLY_REF_SPLICE	NO	140	510	0.01	0	0.0101	0.0101	TMEM245->chr9:111777432-111882225:-,transmembrane_protein_245,PEG10->Oncogene{Bushman},chr7:94285637-94299007:+,paternally_expressed_10	NCIH1650_LUNG	0	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000035
U343_CENTRAL_NERVOUS_SYSTEM	TNS3--TBRG4	95	90	TNS3	8632	chr7:47546505:-	TBRG4	50931	chr7:45148886:-	ONLY_REF_SPLICE	YES	270	3	0.41	0.98	1.1826	1.1204	TNS3->chr7:47314752-47622156:-,tensin_3,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	U343_CENTRAL_NERVOUS_SYSTEM	0.41	0.98	2.303	TRUE	0	0	0	2	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	COL5A1--COL15A1	100	0	COL5A1	37761	chr9:137688739:+	COL15A1	101715	chr9:101822186:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2448	0	HGNC_GENEFAM,PROTCLUST,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1,COL15A1->chr9:101705461-101833069:+,collagen_type_XV_alpha_1	U343_CENTRAL_NERVOUS_SYSTEM	1	1	1.2448	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CLPX--PARP16	84	55	CLPX	4248	chr15:65471272:-	PARP16	33927	chr15:65527161:-	ONLY_REF_SPLICE	YES	59	4	0.7	0.97	1.0457	0.6847	LOCAL_REARRANGEMENT:-:[49118],CLPX->caseinolytic_mitochondrial_matrix_peptidase_chaperone_subunit,chr15:65440557-65477680:-,PARP16->chr15:65526798-65592956:-,poly(ADP-ribose)_polymerase_family_member_16	U343_CENTRAL_NERVOUS_SYSTEM	0.7	0.97	1.7304	TRUE	0	0	0	2	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL7A1	86	2	COL1A1	11597	chr17:48268178:-	COL7A1	48245	chr3:48606288:-	ONLY_REF_SPLICE	NO	7832	1096	0.01	0.07	1.0706	0.0249	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	U343_CENTRAL_NERVOUS_SYSTEM	0.01	0.07	1.0955	TRUE	0	0	0	2	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CD63--TGFBI	78	1	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	4605	12966	0.02	0.01	0.971	0.0124	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	U343_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.9834	TRUE	0	0	0	14	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	65	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8092	0.2863	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	U343_CENTRAL_NERVOUS_SYSTEM	1	1	1.0955	TRUE	508	994	45	981	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CLIP2--EIF4H	59	34	CLIP2	2448	chr7:73731997:+	EIF4H	33009	chr7:73609499:+	ONLY_REF_SPLICE	YES	58	1664	0.62	0.05	0.7345	0.4232	LOCAL_REARRANGEMENT:+:[92374],CLIP2->CAP-Gly_domain_containing_linker_protein_2,chr7:73703805-73820273:+,EIF4H->chr7:73588575-73611431:+,eukaryotic_translation_initiation_factor_4H	U343_CENTRAL_NERVOUS_SYSTEM	0.05	0.62	1.1577	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	39	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	358	9	0.1	0.82	0.4855	0.0373	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	U343_CENTRAL_NERVOUS_SYSTEM	0.1	0.82	0.5228	TRUE	519	3926	326	965	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	ARPC1A--MYH16	29	32	ARPC1A	10109	chr7:98956038:+	MYH16	58398	chr7:98899224:+	ONLY_REF_SPLICE	YES	1621	2	0.04	0.97	0.361	0.3984	LOCAL_REARRANGEMENT:+:[14768],ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	U343_CENTRAL_NERVOUS_SYSTEM	0.04	0.97	0.7594	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	SRM--ERRFI1	30	5	SRM	2225	chr1:11118857:-	ERRFI1	14615	chr1:8064618:-	ONLY_REF_SPLICE	YES	132	0	0.21	1	0.3735	0.0622	SRM->chr1:11114641-11120081:-,spermidine_synthase,ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-	U343_CENTRAL_NERVOUS_SYSTEM	0.21	1	0.4357	TRUE	0	0	0	2	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	VWC2--TNS3	24	11	VWC2	4382	chr7:49842436:+	TNS3	27076	chr7:47520739:-	ONLY_REF_SPLICE	YES	0	266	1	0.12	0.2988	0.1369	VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2,TNS3->chr7:47314752-47622156:-,tensin_3	U343_CENTRAL_NERVOUS_SYSTEM	0.12	1	0.4357	TRUE	0	0	0	2	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	COL6A3--MT-RNR2	25	1	COL6A3	41635	chr2:238249354:-	MT-RNR2	57522	chrM:1699:+	INCL_NON_REF_SPLICE	YES	4238	0	0.01	1	0.3112	0.0124	COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	U343_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.3236	FALSE	0	0	0	6	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	23	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	33	1	0.46	0.2863	0.0622	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	U343_CENTRAL_NERVOUS_SYSTEM	0.46	1	0.3485	TRUE	465	1949	224	605	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	C7orf69--BBS9	22	4	C7orf69	1153	chr7:47835041:+	BBS9	37149	chr7:33644477:+	ONLY_REF_SPLICE	YES	5	51	0.84	0.34	0.2739	0.0498	C7orf69->chr7:47834889-47859445:+,chromosome_7_open_reading_frame_69,BBS9->Bardet-Biedl_syndrome_9,chr7:33168856-33645680:+	U343_CENTRAL_NERVOUS_SYSTEM	0.34	0.84	0.3237	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	TNS3--TBRG4	4	72	TNS3	8632	chr7:47546505:-	TBRG4	50975	chr7:45148842:-	ONLY_REF_SPLICE	YES	270	23	0.22	0.77	0.0498	0.8963	TNS3->chr7:47314752-47622156:-,tensin_3,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	U343_CENTRAL_NERVOUS_SYSTEM	0.22	0.77	0.9461	TRUE	0	0	0	2	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	18	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2241	0.0373	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.2614	FALSE	462	80	0	856	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	16	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.1992	0.0996	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	U343_CENTRAL_NERVOUS_SYSTEM	0.96	1	0.2988	TRUE	458	1351	185	561	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CTB-113P19.1--FTL	15	2	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1867	0.0249	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	U343_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.2116	TRUE	0	2	0	13	2	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	15	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1867	0.0124	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.1991	FALSE	292	1546	117	613	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	11	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	82	99	0.22	0.19	0.1369	0.1494	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	U343_CENTRAL_NERVOUS_SYSTEM	0.19	0.22	0.2863	TRUE	267	562	48	632	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	PAPPA--RP11-264C15.2	10	10	PAPPA	6287	chr9:118974211:+	RP11-264C15.2	38591	chr9:119302719:+	ONLY_REF_SPLICE	YES	6	0	0.77	1	0.1245	0.1245	PAPPA->chr9:118916083-119164601:+,pappalysin_1,RP11-264C15.2->chr9:119266562-119324572:+	U343_CENTRAL_NERVOUS_SYSTEM	0.77	1	0.249	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	TNS3--TBRG4	10	10	TNS3	8632	chr7:47546505:-	TBRG4	54406	chr7:45145363:-	ONLY_REF_SPLICE	YES	270	265	0.07	0.07	0.1245	0.1245	TNS3->chr7:47314752-47622156:-,tensin_3,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	U343_CENTRAL_NERVOUS_SYSTEM	0.07	0.07	0.249	TRUE	0	0	0	2	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	XAB2--SAFB2	11	6	XAB2	7623	chr19:7687217:-	SAFB2	17035	chr19:5616497:-	ONLY_REF_SPLICE	YES	46	100	0.27	0.15	0.1369	0.0747	XAB2->XPA_binding_protein_2,chr19:7684411-7694451:-,SAFB2->chr19:5587010-5624057:-,scaffold_attachment_factor_B2	U343_CENTRAL_NERVOUS_SYSTEM	0.15	0.27	0.2116	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	COL1A1--NPM1	10	7	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	9751	0	0	1	0.1245	0.0871	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	U343_CENTRAL_NERVOUS_SYSTEM	0	1	0.2116	TRUE	0	0	0	31	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	11	3	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	35	1	0.29	0.1369	0.0373	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	U343_CENTRAL_NERVOUS_SYSTEM	0.29	1	0.1742	TRUE	347	1186	183	220	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	11	3	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.1369	0.0373	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	U343_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.1742	TRUE	6	15	3	35	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	11	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1369	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.1369	FALSE	230	193	14	283	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	6	18	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	85	96	0.22	0.2	0.0747	0.2241	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	U343_CENTRAL_NERVOUS_SYSTEM	0.2	0.22	0.2988	TRUE	267	562	48	632	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL7A1	10	1	COL1A1	11863	chr17:48267912:-	COL7A1	50373	chr3:48604160:-	INCL_NON_REF_SPLICE	NO	10083	1342	0	0.01	0.1245	0.0124	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	U343_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.1369	FALSE	0	0	0	2	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL7A1	8	7	COL1A1	14930	chr17:48264845:-	COL7A1	47185	chr3:48607348:-	ONLY_REF_SPLICE	NO	9950	1016	0	0.01	0.0996	0.0871	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	U343_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.1867	TRUE	0	0	0	2	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL7A1	5	13	COL1A1	14895	chr17:48264880:-	COL7A1	40073	chr3:48614460:-	INCL_NON_REF_SPLICE	NO	8648	566	0	0.03	0.0622	0.1618	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	U343_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.224	FALSE	0	0	0	2	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	8	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0996	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0996	FALSE	183	104	9	328	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	7	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0871	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0871	TRUE	1	0	0	97	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	7	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0871	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0871	FALSE	231	204	14	283	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	ANXA2--NARG2	6	3	ANXA2	26282	chr15:60643923:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	YES	5203	75	0	0.11	0.0747	0.0373	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	U343_CENTRAL_NERVOUS_SYSTEM	0	0.11	0.112	TRUE	0	0	0	2	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	GTF3C1--DCTPP1	5	7	GTF3C1	5124	chr16:27544612:-	DCTPP1	44386	chr16:30440488:-	ONLY_REF_SPLICE	YES	30	52	0.29	0.19	0.0622	0.0871	GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1,DCTPP1->chr16:30434940-30441396:-,dCTP_pyrophosphatase_1	U343_CENTRAL_NERVOUS_SYSTEM	0.19	0.29	0.1493	TRUE	0	0	0	2	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL7A1	6	2	COL1A1	6255	chr17:48273520:-	COL7A1	45830	chr3:48608703:-	INCL_NON_REF_SPLICE	NO	8692	988	0	0.01	0.0747	0.0249	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	U343_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0996	FALSE	0	0	0	2	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	COL1A1--MTND2P28	5	6	COL1A1	16959	chr17:48262816:-	MTND2P28	22139	chr1:565033:+	INCL_NON_REF_SPLICE	YES	3200	0	0	1	0.0622	0.0747	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	U343_CENTRAL_NERVOUS_SYSTEM	0	1	0.1369	TRUE	0	0	0	1	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	6	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	3	0.89	0.73	0.0747	0.0249	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	U343_CENTRAL_NERVOUS_SYSTEM	0.73	0.89	0.0996	FALSE	515	4851	409	746	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL7A1	6	1	COL1A1	6491	chr17:48273284:-	COL7A1	49337	chr3:48605196:-	ONLY_REF_SPLICE	YES	8600	1458	0	0	0.0747	0.0124	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	U343_CENTRAL_NERVOUS_SYSTEM	0	0	0.0871	FALSE	0	0	0	2	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CTB-113P19.1--FTL	5	4	CTB-113P19.1	4742	chr5:151066491:+	FTL	9972	chr19:49468589:+	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0622	0.0498	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	U343_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.112	TRUE	0	2	0	13	2	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	FAM69A--EVI5	6	0	FAM69A	1125	chr1:93426933:-	EVI5	15259	chr1:93170301:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0747	0	NEIGHBORS[49763],FAM69A->chr1:93307724-93427057:-,family_with_sequence_similarity_69_member_A,EVI5->chr1:92974253-93257961:-,ecotropic_viral_integration_site_5	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0747	FALSE	0	0	0	1	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	6	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0747	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0747	TRUE	4	2	0	28	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	5	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0622	0.0373	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0995	FALSE	462	80	0	856	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	4	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2448	65	0	0.11	0.0498	0.0498	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	U343_CENTRAL_NERVOUS_SYSTEM	0	0.11	0.0996	FALSE	216	209	16	281	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL7A1	4	3	COL1A1	5797	chr17:48273978:-	COL7A1	35035	chr3:48619791:-	ONLY_REF_SPLICE	YES	7884	641	0	0.01	0.0498	0.0373	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	U343_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0871	FALSE	0	0	0	1	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CTB-113P19.1--FTL	4	3	CTB-113P19.1	4733	chr5:151066482:+	FTL	9963	chr19:49468580:+	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0498	0.0373	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	U343_CENTRAL_NERVOUS_SYSTEM	0.78	1	0.0871	TRUE	0	2	0	13	2	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	MEF2D--HDGF	4	3	MEF2D	11000	chr1:156444900:-	HDGF	27033	chr1:156715165:-	ONLY_REF_SPLICE	YES	108	218	0.06	0.03	0.0498	0.0373	MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,HDGF->chr1:156711899-156736717:-,hepatoma-derived_growth_factor	U343_CENTRAL_NERVOUS_SYSTEM	0.03	0.06	0.0871	TRUE	0	0	0	1	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	4	3	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0498	0.0373	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0871	FALSE	462	80	0	856	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	PAPPA--RP11-264C15.2	4	2	PAPPA	6287	chr9:118974211:+	RP11-264C15.2	43994	chr9:119313266:+	ONLY_REF_SPLICE	YES	6	2	0.5	0.75	0.0498	0.0249	PAPPA->chr9:118916083-119164601:+,pappalysin_1,RP11-264C15.2->chr9:119266562-119324572:+	U343_CENTRAL_NERVOUS_SYSTEM	0.5	0.75	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	LAMP1--PKM	4	1	LAMP1	10141	chr13:113976769:+	PKM	15012	chr15:72523512:-	INCL_NON_REF_SPLICE	YES	1955	10	0	0.33	0.0498	0.0124	LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	U343_CENTRAL_NERVOUS_SYSTEM	0	0.33	0.0622	FALSE	0	0	0	3	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	FLNA--MT-CO2	3	4	FLNA	16633	chrX:153582033:-	MT-CO2	24775	chrM:7586:+	INCL_NON_REF_SPLICE	YES	1976	0	0	1	0.0373	0.0498	FLNA->chrX:153576892-153603006:-,filamin_A,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	U343_CENTRAL_NERVOUS_SYSTEM	0	1	0.0871	FALSE	0	0	0	5	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	3	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0373	0.0498	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	U343_CENTRAL_NERVOUS_SYSTEM	0.7	1	0.0871	FALSE	125	705	46	456	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	VWC2--TNS3	2	8	VWC2	4382	chr7:49842436:+	TNS3	29414	chr7:47481653:-	ONLY_REF_SPLICE	YES	0	281	1	0.03	0.0249	0.0996	VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2,TNS3->chr7:47314752-47622156:-,tensin_3	U343_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.1245	TRUE	0	0	0	2	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	COL5A1--COL6A3	3	2	COL5A1	47939	chr9:137704558:+	COL6A3	94133	chr2:238267893:-	ONLY_REF_SPLICE	YES	2165	3456	0	0	0.0373	0.0249	GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},HGNC_GENEFAM,PROTCLUST,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	U343_CENTRAL_NERVOUS_SYSTEM	0	0	0.0622	FALSE	0	0	0	1	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	3	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0.0249	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0622	TRUE	477	1352	189	275	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL7A1	3	1	COL1A1	13884	chr17:48265891:-	COL7A1	50537	chr3:48603996:-	ONLY_REF_SPLICE	NO	10133	1258	0	0	0.0373	0.0124	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	U343_CENTRAL_NERVOUS_SYSTEM	0	0	0.0497	FALSE	0	0	0	2	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	DPH6-AS1--RP11-684B21.1	3	1	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	6	0	0.4	1	0.0373	0.0124	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	U343_CENTRAL_NERVOUS_SYSTEM	0.4	1	0.0497	TRUE	17	119	17	33	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16348	65	0	0.06	0.0373	0.0124	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	U343_CENTRAL_NERVOUS_SYSTEM	0	0.06	0.0497	FALSE	231	205	14	283	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	1	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18010	65	0	0.06	0.0373	0.0124	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	U343_CENTRAL_NERVOUS_SYSTEM	0	0.06	0.0497	FALSE	231	217	16	283	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	TGFBI--SPARC	3	1	TGFBI	6326	chr5:135382678:+	SPARC	29790	chr5:151051249:-	INCL_NON_REF_SPLICE	YES	16701	11193	0	0	0.0373	0.0124	TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	U343_CENTRAL_NERVOUS_SYSTEM	0	0	0.0497	FALSE	0	0	0	1	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CSNK1D--OGFOD3	3	0	CSNK1D	10594	chr17:80209255:-	OGFOD3	36646	chr17:80350410:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-,OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	FAM20C--PSMG3-AS1	3	0	FAM20C	3327	chr7:195732:+	PSMG3-AS1	18723	chr7:1614351:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,PSMG3-AS1->PSMG3_antisense_RNA_1_(head_to_head),chr7:1609709-1629262:+	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	3	0	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	TRUE	1	0	0	97	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	FALSE	183	104	9	328	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	0	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	FALSE	230	197	14	283	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	6	0	0.5	1	0.0249	0.0498	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	U343_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0747	FALSE	164	806	69	479	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	3	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	TRUE	0	2	1	13	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	SARS--IRF2BP2	3	0	SARS	1211	chr1:109756750:+	IRF2BP2	16071	chr1:234743598:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	SARS->chr1:109756540-109780791:+,seryl-tRNA_synthetase,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	SLC39A1--FAM133DP	3	0	SLC39A1	5770	chr1:153932272:-	FAM133DP	9479	chr2:158236915:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	SLC39A1->chr1:153931575-153940188:-,solute_carrier_family_39_member_1,FAM133DP->chr2:158236236-158236926:-,family_with_sequence_similarity_133_member_D,_pseudogene	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	2	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	65	1	0.06	0.0249	0.0249	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	U343_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0498	TRUE	15	36	8	26	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CRIM1--FEZ2	2	1	CRIM1	21418	chr2:36764689:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	185	343	0.02	0.01	0.0249	0.0124	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	U343_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0373	FALSE	1	4	0	11	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	2	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	30	1	0.09	0.0249	0.0124	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	U343_CENTRAL_NERVOUS_SYSTEM	0.09	1	0.0373	FALSE	141	264	50	91	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	SRM--ERRFI1	1	5	SRM	2315	chr1:11118767:-	ERRFI1	14615	chr1:8064618:-	ONLY_REF_SPLICE	YES	153	0	0.04	1	0.0124	0.0622	SRM->chr1:11114641-11120081:-,spermidine_synthase,ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-	U343_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0746	TRUE	0	0	0	2	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	1	4	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	1381	141	0	0.03	0.0124	0.0498	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	U343_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0622	FALSE	0	20	0	35	2	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL7A1	1	4	COL1A1	11871	chr17:48267904:-	COL7A1	43543	chr3:48610990:-	ONLY_REF_SPLICE	YES	11519	1244	0	0	0.0124	0.0498	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	U343_CENTRAL_NERVOUS_SYSTEM	0	0	0.0622	FALSE	0	0	0	1	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CTC-260F20.3--SFPQ	2	0	CTC-260F20.3	1106	chr19:19627141:+	SFPQ	25329	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	CTC-260F20.3->chr19:19627036-19646885:+,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	ENAH--EPHX1	2	0	ENAH	10351	chr1:225704898:-	EPHX1	36606	chr1:226016426:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Coronary=1,Prostate=1},ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila),EPHX1->chr1:225997794-226033260:+,epoxide_hydrolase_1	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	PC--RBM4	2	0	PC	3864	chr11:66719901:-	RBM4	34471	chr11:66433327:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	PC->chr11:66615704-66725847:-,pyruvate_carboxylase,RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	PTBP2--GLIS3	2	0	PTBP2	2930	chr1:97189150:+	GLIS3	51964	chr9:3898835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,GLIS3->GLIS_family_zinc_finger_3,chr9:3824127-4348392:-	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	SPDL1--FAM192A	2	0	SPDL1	1256	chr5:169010893:+	FAM192A	25383	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	SPDL1->chr5:169010638-169031782:+,spindle_apparatus_coiled-coil_protein_1,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	STX18-AS1--MSX1	2	0	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	U343_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	37	101	7	40	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	1	3	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	1939	141	0	0.03	0.0124	0.0373	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	U343_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0497	FALSE	0	7	0	19	1	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	1	3	CD44	1501	chr11:35160917:+	PDHX	39859	chr11:34999671:+	ONLY_REF_SPLICE	YES	1939	111	0	0.03	0.0124	0.0373	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	U343_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0497	FALSE	0	0	0	3	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	GTF3C1--DCTPP1	1	3	GTF3C1	4027	chr16:27549105:-	DCTPP1	44386	chr16:30440488:-	ONLY_REF_SPLICE	YES	26	52	0.13	0.07	0.0124	0.0373	GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1,DCTPP1->chr16:30434940-30441396:-,dCTP_pyrophosphatase_1	U343_CENTRAL_NERVOUS_SYSTEM	0.07	0.13	0.0497	TRUE	0	0	0	2	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	1	3	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	7741	chr5:95644428:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0124	0.0373	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	U343_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.0497	TRUE	1	1	0	7	1	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	VAPB--APCDD1L-AS1	1	2	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	25288	chr20:57098225:+	ONLY_REF_SPLICE	NO	129	146	0.02	0.02	0.0124	0.0249	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	U343_CENTRAL_NERVOUS_SYSTEM	0.02	0.02	0.0373	FALSE	0	1	0	5	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	VAPB--APCDD1L-AS1	1	2	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	29152	chr20:57122868:+	ONLY_REF_SPLICE	YES	129	50	0.02	0.06	0.0124	0.0249	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	U343_CENTRAL_NERVOUS_SYSTEM	0.02	0.06	0.0373	FALSE	1	3	0	4	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	COL5A1--COL6A3	1	1	COL5A1	29794	chr9:137666758:+	COL6A3	94133	chr2:238267893:-	ONLY_REF_SPLICE	NO	1205	3456	0	0	0.0124	0.0124	GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},HGNC_GENEFAM,PROTCLUST,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	U343_CENTRAL_NERVOUS_SYSTEM	0	0	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	CRIM1--FEZ2	1	1	CRIM1	18863	chr2:36749456:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	NO	159	343	0.01	0.01	0.0124	0.0124	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	U343_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0248	FALSE	2	2	0	15	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	FAM172A--NR2F1-AS1	1	1	FAM172A	2315	chr5:93410351:-	NR2F1-AS1	39228	chr5:92747215:-	ONLY_REF_SPLICE	YES	49	127	0.04	0.02	0.0124	0.0124	NEIGHBORS[32421],FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-	U343_CENTRAL_NERVOUS_SYSTEM	0.02	0.04	0.0248	FALSE	1	0	0	1	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	3	5	0.4	0.29	0.0124	0.0124	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	U343_CENTRAL_NERVOUS_SYSTEM	0.29	0.4	0.0248	FALSE	7	44	2	41	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	NUDT9--WDFY3-AS2	1	1	NUDT9	3426	chr4:88356372:+	WDFY3-AS2	19727	chr4:85925383:+	ONLY_REF_SPLICE	NO	93	1	0.02	0.67	0.0124	0.0124	NUDT9->chr4:88343734-88380606:+,nudix_hydrolase_9,WDFY3-AS2->WDFY3_antisense_RNA_2,chr4:85887538-85932430:+	U343_CENTRAL_NERVOUS_SYSTEM	0.02	0.67	0.0248	TRUE	0	0	0	1	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	PACSIN2--FDFT1	1	1	PACSIN2	1125	chr22:43411027:-	FDFT1	31984	chr8:11666303:+	ONLY_REF_SPLICE	YES	66	879	0.03	0	0.0124	0.0124	PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1	U343_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	PFN2--RNF13	1	1	PFN2	3815	chr3:149688512:-	RNF13	24476	chr3:149677843:+	ONLY_REF_SPLICE	YES	1329	99	0	0.02	0.0124	0.0124	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[2765],PFN2->chr3:149682691-149768575:-,profilin_2,RNF13->chr3:149530495-149679926:+,ring_finger_protein_13	U343_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	PPP1R12C--CNN2	1	1	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	168	630	0.01	0	0.0124	0.0124	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	U343_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0248	FALSE	35	34	3	30	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	25	0.67	0.07	0.0124	0.0124	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	U343_CENTRAL_NERVOUS_SYSTEM	0.07	0.67	0.0248	FALSE	16	356	14	466	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	RP11-123K19.1--CCDC101	1	1	RP11-123K19.1	1252	chr9:129375728:-	CCDC101	10491	chr16:28592376:+	ONLY_REF_SPLICE	YES	0	23	1	0.08	0.0124	0.0124	RP11-123K19.1->chr9:129351873-129375979:-,CCDC101->chr16:28565236-28603111:+	U343_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.0248	TRUE	0	0	0	2	0	TRUE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	1	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0124	0.0124	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	U343_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.0248	TRUE	0	7	2	11	5	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	VAPB--APCDD1L-AS1	1	1	VAPB	1396	chr20:56964573:+	APCDD1L-AS1	31664	chr20:57193796:+	ONLY_REF_SPLICE	NO	93	1	0.02	0.67	0.0124	0.0124	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	U343_CENTRAL_NERVOUS_SYSTEM	0.02	0.67	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000036
U343_CENTRAL_NERVOUS_SYSTEM	VAPB--APCDD1L-AS1	1	1	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	31664	chr20:57193796:+	ONLY_REF_SPLICE	YES	129	1	0.02	0.67	0.0124	0.0124	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	U343_CENTRAL_NERVOUS_SYSTEM	0.02	0.67	0.0248	FALSE	2	12	0	8	0	FALSE	ACH-000036
D283MED_CENTRAL_NERVOUS_SYSTEM	RP11-408A13.2--NFIB	187	41	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	94	1	0.71	1.6008	0.351	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	D283MED_CENTRAL_NERVOUS_SYSTEM	0.71	1	1.9518	TRUE	0	14	0	20	14	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	104	6	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8903	0.0514	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.9417	TRUE	508	994	45	981	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	C6orf141--ZNF529	76	1	C6orf141	5089	chr6:49522870:+	ZNF529	13907	chr19:37073608:-	INCL_NON_REF_SPLICE	YES	341	10	0.18	0.89	0.6506	0.0086	GTEx_FI:{Brain=[count:22=pct:3.3],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Breast=[count:1=pct:0.9]},C6orf141->chr6:49518113-49529620:+,chromosome_6_open_reading_frame_141,ZNF529->chr19:37025676-37096178:-,zinc_finger_protein_529	D283MED_CENTRAL_NERVOUS_SYSTEM	0.18	0.89	0.6592	TRUE	23	15	0	4	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	65	11	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5564	0.0942	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.6506	FALSE	416	2512	207	587	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	62	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5308	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.5308	TRUE	0	0	0	518	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	52	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	135	2	0.29	0.96	0.4451	0.0171	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	D283MED_CENTRAL_NERVOUS_SYSTEM	0.29	0.96	0.4622	TRUE	519	3926	326	965	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	34	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.84	0.2911	0.0257	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	D283MED_CENTRAL_NERVOUS_SYSTEM	0.84	1	0.3168	TRUE	458	1351	185	561	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	32	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2739	0.0086	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.2825	FALSE	462	80	0	856	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	OTX2-AS1--TMEM260	24	9	OTX2-AS1	1287	chr14:57280187:+	TMEM260	38298	chr14:57113961:+	ONLY_REF_SPLICE	YES	52	12	0.39	0.73	0.2055	0.077	OTX2-AS1->OTX2_antisense_RNA_1_(head_to_head),chr14:57279901-57618895:+,TMEM260->chr14:56955072-57117324:+,transmembrane_protein_260	D283MED_CENTRAL_NERVOUS_SYSTEM	0.39	0.73	0.2825	TRUE	0	0	0	1	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	21	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1798	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.1798	FALSE	499	1288	110	792	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	17	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3228	0	0.01	1	0.1455	0.0171	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	D283MED_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.1626	FALSE	13	9	0	364	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	16	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.137	0.0086	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.1456	FALSE	499	1288	110	792	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	14	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1198	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.1198	TRUE	465	1949	224	605	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	RP11-408A13.2--NFIB	3	43	RP11-408A13.2	1096	chr9:14531945:-	NFIB	4303	chr9:14398807:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0.3681	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.3938	TRUE	0	0	0	2	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	12	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3254	0	0	1	0.1027	0.0257	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	D283MED_CENTRAL_NERVOUS_SYSTEM	0	1	0.1284	FALSE	13	9	0	364	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	MT-ND1--MT-TL1	12	2	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1027	0.0171	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.1198	FALSE	210	95	5	49	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	12	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1027	0.0086	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.1113	FALSE	462	80	0	856	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	10	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0856	0.0257	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.1113	TRUE	477	1352	189	275	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	8	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0685	0.0685	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.137	FALSE	499	1288	110	792	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	8	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	22	15	0.31	0.4	0.0685	0.0171	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	D283MED_CENTRAL_NERVOUS_SYSTEM	0.31	0.4	0.0856	TRUE	267	562	48	632	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	6	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	23	15	0.26	0.35	0.0514	0.0171	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	D283MED_CENTRAL_NERVOUS_SYSTEM	0.26	0.35	0.0685	TRUE	267	562	48	632	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	ENO1--EEF2	6	0	ENO1	11548	chr1:8923321:-	EEF2	24932	chr19:3976731:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0514	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0514	TRUE	0	0	0	9	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	GAB2--NARS2	6	0	GAB2	1703	chr11:78128692:-	NARS2	36514	chr11:78154804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0514	0	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[17613],GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0514	TRUE	0	2	0	2	1	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	MT-ND1--MT-TL1	4	7	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	8	0	0.58	1	0.0342	0.0599	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	D283MED_CENTRAL_NERVOUS_SYSTEM	0.58	1	0.0941	FALSE	210	95	5	49	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	EIF1--RPL5	5	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0428	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0428	TRUE	0	0	0	39	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0428	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0428	TRUE	22	156	2	142	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	PABPC1--RPS28	4	0	PABPC1	2022	chr8:101734016:-	RPS28	18700	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0342	TRUE	0	0	0	6	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	4	0	TIMM23B	1257	chr10:51371646:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0342	TRUE	0	0	0	10	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	RP11-163F15.1--RP11-215N21.1	3	1	RP11-163F15.1	1139	chr10:110321435:-	RP11-215N21.1	16796	chr10:109803082:-	ONLY_REF_SPLICE	YES	28	6	0.12	0.4	0.0257	0.0086	RP11-163F15.1->chr10:110307733-110321573:-,RP11-215N21.1->chr10:109517591-109871360:-	D283MED_CENTRAL_NERVOUS_SYSTEM	0.12	0.4	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	LSM14A--ANP32E	3	0	LSM14A	12976	chr19:34718744:+	ANP32E	17768	chr1:150208389:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+,ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	RP11-163F15.1--RP11-215N21.1	2	1	RP11-163F15.1	1139	chr10:110321435:-	RP11-215N21.1	6576	chr10:109871360:-	ONLY_REF_SPLICE	YES	28	0	0.1	1	0.0171	0.0086	RP11-163F15.1->chr10:110307733-110321573:-,RP11-215N21.1->chr10:109517591-109871360:-	D283MED_CENTRAL_NERVOUS_SYSTEM	0.1	1	0.0257	TRUE	0	5	0	7	5	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	C17orf76-AS1--FAF1	2	0	C17orf76-AS1	1593	chr17:16342728:+	FAF1	24922	chr1:51061888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	C17orf76-AS1->chr17:16342136-16381992:+,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	IFT140--ZC3H7B	2	0	IFT140	21093	chr16:1607936:-	ZC3H7B	48067	chr22:41734317:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	IFT140->chr16:1560428-1662111:-,intraflagellar_transport_140,ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	MATR3--PHF20	2	0	MATR3	3802	chr5:138614097:+	PHF20	36194	chr20:34388016:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	MATR3->chr5:138609441-138667360:+,matrin_3,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	PANK2--C9orf3	2	0	PANK2	8597	chr20:3897697:+	C9orf3	54231	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx_FI:{Nerve=[count:3=pct:1.8],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=13;pct=0.15%;dist=Artery_-_Tibial=3,Artery_-_Aorta=3,Nerve_-_Tibial=2,Prostate=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1},PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0171	TRUE	4	3	1	1	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	SDC2--LAPTM4B	2	0	SDC2	1981	chr8:97506559:+	LAPTM4B	20495	chr8:98817581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},SDC2->chr8:97505579-97624000:+,syndecan_2,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0171	TRUE	5	8	0	33	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	TMEM242--ARID1B	2	0	TMEM242	3035	chr6:157739814:-	ARID1B	18467	chr6:157256600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},TMEM242->chr6:157710418-157744633:-,transmembrane_protein_242,ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0171	TRUE	0	1	0	1	1	TRUE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0.0257	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	D283MED_CENTRAL_NERVOUS_SYSTEM	1	1	0.0343	FALSE	93	270	15	244	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	SF1--GNAS	1	2	SF1	3289	chr11:64543970:-	GNAS	32063	chr20:57470667:+	ONLY_REF_SPLICE	YES	275	756	0.01	0	0.0086	0.0171	GTEx_FI:{Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=3,Pituitary=3,Minor_Salivary_Gland=1,Brain_-_Hypothalamus=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	D283MED_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0257	FALSE	4	13	1	15	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	SORBS2--DCTD	1	2	SORBS2	1457	chr4:186877350:-	DCTD	57681	chr4:183836728:-	ONLY_REF_SPLICE	NO	42	50	0.07	0.06	0.0086	0.0171	SORBS2->Oncogene{Bushman},chr4:186506598-186877806:-,sorbin_and_SH3_domain_containing_2,DCTD->chr4:183811213-183839089:-,dCMP_deaminase	D283MED_CENTRAL_NERVOUS_SYSTEM	0.06	0.07	0.0257	TRUE	0	0	0	1	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	ERCC6L--PIN4	1	1	ERCC6L	1204	chrX:71458694:-	PIN4	13131	chrX:71416635:+	ONLY_REF_SPLICE	YES	12	120	0.14	0.02	0.0086	0.0086	NEIGHBORS_OVERLAP:-:+:[34387],ERCC6L->chrX:71424510-71458897:-,excision_repair_cross-complementation_group_6_like,PIN4->chrX:71401203-71522776:+,peptidylprolyl_cis/trans_isomerase,_NIMA-interacting_4	D283MED_CENTRAL_NERVOUS_SYSTEM	0.02	0.14	0.0172	FALSE	0	0	0	2	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	FBRSL1--NOC4L	1	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	72	56	0.03	0.03	0.0086	0.0086	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	D283MED_CENTRAL_NERVOUS_SYSTEM	0.03	0.03	0.0172	TRUE	3	48	0	26	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	GAS5--SNHG1	1	1	GAS5	5208	chr1:173833813:-	SNHG1	11065	chr11:62621305:-	ONLY_REF_SPLICE	YES	2161	801	0	0	0.0086	0.0086	HGNC_GENEFAM,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding),SNHG1->chr11:62619460-62623386:-,small_nucleolar_RNA_host_gene_1	D283MED_CENTRAL_NERVOUS_SYSTEM	0	0	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000055
D283MED_CENTRAL_NERVOUS_SYSTEM	TMEM242--MCC	1	1	TMEM242	3035	chr6:157739814:-	MCC	33354	chr5:112399864:-	ONLY_REF_SPLICE	NO	46	333	0.04	0.01	0.0086	0.0086	TMEM242->chr6:157710418-157744633:-,transmembrane_protein_242,MCC->Oncogene{Bushman},chr5:112357796-112824527:-,mutated_in_colorectal_cancers	D283MED_CENTRAL_NERVOUS_SYSTEM	0.01	0.04	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000055
HS294T_SKIN	TIMM23B--LINC00843	113	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3542	0.3116	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS294T_SKIN	1	1	1.6658	TRUE	508	994	45	981	0	FALSE	ACH-000014
HS294T_SKIN	TIMM23--RP11-464F9.1	66	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	207	0	0.26	1	0.7909	0.0839	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS294T_SKIN	0.26	1	0.8748	TRUE	519	3926	326	965	0	FALSE	ACH-000014
HS294T_SKIN	OSBPL5--KCNQ1-AS1	63	4	OSBPL5	2524	chr11:3186446:-	KCNQ1-AS1	32837	chr11:2861672:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.755	0.0479	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,KCNQ1-AS1->KCNQ1_antisense_RNA_1,chr11:2861365-2882798:-	HS294T_SKIN	1	1	0.8029	TRUE	0	0	0	2	0	TRUE	ACH-000014
HS294T_SKIN	AP003900.6--AP000345.1	33	1	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	3	0	0.92	1	0.3955	0.012	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	HS294T_SKIN	0.92	1	0.4075	TRUE	4	17	0	31	0	FALSE	ACH-000014
HS294T_SKIN	MT-TA--MT-TC	31	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3715	0.0719	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS294T_SKIN	1	1	0.4434	FALSE	462	80	0	856	0	FALSE	ACH-000014
HS294T_SKIN	KANSL1--ARL17B	24	9	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	23	18	0.59	0.65	0.2876	0.1079	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HS294T_SKIN	0.59	0.65	0.3955	TRUE	181	1564	124	196	0	FALSE	ACH-000014
HS294T_SKIN	NRIP1--AF127936.7	20	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.82	1	0.2397	0.036	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS294T_SKIN	0.82	1	0.2757	FALSE	292	1546	117	613	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND4--MT-ATP8	20	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2397	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS294T_SKIN	1	1	0.2397	FALSE	230	193	14	283	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND6--MT-TE	19	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2277	0.012	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS294T_SKIN	1	1	0.2397	FALSE	499	1288	110	792	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND6--MT-TE	19	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2277	0.012	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS294T_SKIN	1	1	0.2397	FALSE	499	1288	110	792	0	FALSE	ACH-000014
HS294T_SKIN	RP11-444D3.1--SOX5	17	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	32	1	0.43	0.2037	0.0839	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS294T_SKIN	0.43	1	0.2876	TRUE	477	1352	189	275	0	FALSE	ACH-000014
HS294T_SKIN	RP11-141M1.3--STARD13	16	10	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	10	106	0.72	0.2	0.1917	0.1198	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HS294T_SKIN	0.2	0.72	0.3115	FALSE	49	120	16	70	0	FALSE	ACH-000014
HS294T_SKIN	AP003900.6--AP000345.1	17	3	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.2037	0.036	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	HS294T_SKIN	0.95	1	0.2397	TRUE	0	8	0	37	1	FALSE	ACH-000014
HS294T_SKIN	RP11-141M1.3--STARD13	15	5	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	9	106	0.69	0.16	0.1798	0.0599	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HS294T_SKIN	0.16	0.69	0.2397	FALSE	141	264	50	91	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND6--MT-TE	10	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.1198	0.1318	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS294T_SKIN	0.88	1	0.2516	FALSE	499	1288	110	792	0	FALSE	ACH-000014
HS294T_SKIN	C15orf57--CBX3	11	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	35	23	0.31	0.41	0.1318	0.0599	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS294T_SKIN	0.31	0.41	0.1917	TRUE	267	562	48	632	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND4--MT-ATP8	12	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1438	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS294T_SKIN	1	1	0.1438	FALSE	230	198	14	283	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND4--MT-ATP8	10	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1198	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS294T_SKIN	1	1	0.1198	FALSE	230	193	14	283	0	FALSE	ACH-000014
HS294T_SKIN	RP11-634B7.4--TRIM58	9	4	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	67	1	0.16	0.1079	0.0479	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	HS294T_SKIN	0.16	1	0.1558	TRUE	158	633	76	73	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND3--MT-ATP8	9	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1079	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS294T_SKIN	1	1	0.1079	FALSE	351	233	23	137	0	FALSE	ACH-000014
HS294T_SKIN	C15orf57--CBX3	6	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	34	24	0.24	0.31	0.0719	0.0599	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS294T_SKIN	0.24	0.31	0.1318	TRUE	267	562	48	632	0	FALSE	ACH-000014
HS294T_SKIN	NRIP1--AF127936.7	6	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	27	0	0.25	1	0.0719	0.036	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS294T_SKIN	0.25	1	0.1079	FALSE	125	705	46	456	0	FALSE	ACH-000014
HS294T_SKIN	RP11-285C1.2--TRIM2	6	3	RP11-285C1.2	2218	chr4:153958132:+	TRIM2	15880	chr4:154191487:+	ONLY_REF_SPLICE	YES	8	108	0.53	0.08	0.0719	0.036	NEIGHBORS[61177],RP11-285C1.2->chr4:153955363-154012317:+,TRIM2->chr4:154073494-154260472:+,tripartite_motif_containing_2	HS294T_SKIN	0.08	0.53	0.1079	FALSE	0	1	0	2	0	FALSE	ACH-000014
HS294T_SKIN	MT-TA--MT-TC	5	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0599	0.0719	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS294T_SKIN	1	1	0.1318	FALSE	462	80	0	856	0	FALSE	ACH-000014
HS294T_SKIN	RP11-168O22.1--PCDH15	6	1	RP11-168O22.1	3305	chr10:57125852:-	PCDH15	9774	chr10:56926411:-	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0719	0.012	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	HS294T_SKIN	0.7	1	0.0839	TRUE	14	7	0	7	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND4--MT-ATP8	6	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS294T_SKIN	1	1	0.0719	FALSE	231	205	14	283	0	FALSE	ACH-000014
HS294T_SKIN	NPM1P24--SET	6	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0719	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HS294T_SKIN	1	1	0.0719	TRUE	0	0	0	434	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND6--MT-TE	3	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0.1198	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS294T_SKIN	1	1	0.1558	FALSE	499	1288	110	792	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND4--MT-ATP8	5	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10678	68	0	0.08	0.0599	0.012	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS294T_SKIN	0	0.08	0.0719	FALSE	231	217	16	283	0	FALSE	ACH-000014
HS294T_SKIN	NGFR--MT-ND4L	4	5	NGFR	9353	chr17:47590634:+	MT-ND4L	14114	chrM:10485:+	INCL_NON_REF_SPLICE	YES	3227	0	0	1	0.0479	0.0599	NGFR->Oncogene{Bushman},chr17:47572655-47592379:+,nerve_growth_factor_receptor,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS294T_SKIN	0	1	0.1078	FALSE	0	0	0	2	0	FALSE	ACH-000014
HS294T_SKIN	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	5	5	0.55	0.55	0.0599	0.012	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS294T_SKIN	0.55	0.55	0.0719	FALSE	25	145	6	90	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND4--MT-ATP8	5	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0599	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS294T_SKIN	1	1	0.0599	FALSE	230	193	14	283	0	FALSE	ACH-000014
HS294T_SKIN	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0599	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS294T_SKIN	1	1	0.0599	FALSE	462	80	0	856	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND4--MT-ATP8	4	2	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	12024	0	0	1	0.0479	0.024	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS294T_SKIN	0	1	0.0719	FALSE	231	217	16	283	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND6--MT-TE	3	5	MT-ND6	1261	chrM:14413:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.036	0.0599	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS294T_SKIN	0.89	1	0.0959	FALSE	499	1288	110	792	0	FALSE	ACH-000014
HS294T_SKIN	RP11-444D3.1--SOX5	3	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	32	1	0.2	0.036	0.0599	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS294T_SKIN	0.2	1	0.0959	TRUE	274	363	69	150	0	FALSE	ACH-000014
HS294T_SKIN	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0479	0.012	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS294T_SKIN	1	1	0.0599	FALSE	515	4851	409	746	0	FALSE	ACH-000014
HS294T_SKIN	MT-ATP8--MT-CO1	4	0	MT-ATP8	1064	chrM:8429:+	MT-CO1	4698	chrM:6394:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:+:[921],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS294T_SKIN	1	1	0.0479	FALSE	3	1	0	9	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND4--MT-ATP8	4	0	MT-ND4	1386	chrM:11145:+	MT-ATP8	5578	chrM:8565:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS294T_SKIN	1	1	0.0479	FALSE	231	217	16	283	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS294T_SKIN	1	1	0.0479	FALSE	499	1288	110	792	0	FALSE	ACH-000014
HS294T_SKIN	PRR16--CTD-2334D19.1	4	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0479	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS294T_SKIN	1	1	0.0479	FALSE	56	216	12	147	0	FALSE	ACH-000014
HS294T_SKIN	RP1-34H18.1--RP11-781A6.1	4	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0479	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	HS294T_SKIN	1	1	0.0479	TRUE	94	160	11	37	0	FALSE	ACH-000014
HS294T_SKIN	RP11-285C1.2--TRIM2	3	3	RP11-285C1.2	3386	chr4:153987509:+	TRIM2	15883	chr4:154191490:+	ONLY_REF_SPLICE	YES	3	102	0.67	0.06	0.036	0.036	NEIGHBORS[61177],RP11-285C1.2->chr4:153955363-154012317:+,TRIM2->chr4:154073494-154260472:+,tripartite_motif_containing_2	HS294T_SKIN	0.06	0.67	0.072	FALSE	0	1	0	2	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND4--MT-ATP8	3	2	MT-ND4	2255	chrM:12014:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	1584	0	0	1	0.036	0.024	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS294T_SKIN	0	1	0.06	FALSE	216	209	16	281	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND4--MT-ATP8	3	2	MT-ND4	1503	chrM:11262:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	12324	0	0	1	0.036	0.024	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS294T_SKIN	0	1	0.06	FALSE	231	217	16	283	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND4--MT-ATP8	3	1	MT-ND4	1452	chrM:11211:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12741	2	0	0.67	0.036	0.012	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS294T_SKIN	0	0.67	0.048	FALSE	231	217	16	283	0	FALSE	ACH-000014
HS294T_SKIN	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0.012	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS294T_SKIN	1	1	0.048	TRUE	458	1351	185	561	0	FALSE	ACH-000014
HS294T_SKIN	YWHAE--CRK	3	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1301	147	0	0.03	0.036	0.012	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	HS294T_SKIN	0	0.03	0.048	FALSE	6	50	7	115	0	FALSE	ACH-000014
HS294T_SKIN	AC024084.1--AC009784.3	3	0	AC024084.1	2134	chr7:135715781:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	HS294T_SKIN	1	1	0.036	FALSE	0	3	0	12	0	FALSE	ACH-000014
HS294T_SKIN	AC024084.1--AC009784.3	3	0	AC024084.1	2134	chr7:135715781:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	HS294T_SKIN	1	1	0.036	FALSE	1	6	0	14	0	FALSE	ACH-000014
HS294T_SKIN	APP--MT-ND2	3	0	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HS294T_SKIN	1	1	0.036	FALSE	0	1	0	51	0	FALSE	ACH-000014
HS294T_SKIN	APP--MT-ND2	3	0	APP	11619	chr21:27394230:-	MT-ND2	32998	chrM:5292:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HS294T_SKIN	1	1	0.036	FALSE	0	1	0	51	0	FALSE	ACH-000014
HS294T_SKIN	MT-ATP8--MT-CO1	3	0	MT-ATP8	1086	chrM:8451:+	MT-CO1	4721	chrM:6417:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	LOCAL_REARRANGEMENT:+:[921],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS294T_SKIN	1	1	0.036	FALSE	3	1	0	9	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND4--MT-ATP8	3	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS294T_SKIN	1	1	0.036	FALSE	231	204	14	283	0	FALSE	ACH-000014
HS294T_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS294T_SKIN	1	1	0.036	FALSE	499	1288	110	792	0	FALSE	ACH-000014
HS294T_SKIN	RP11-168O22.1--PCDH15	3	0	RP11-168O22.1	2183	chr10:57335410:-	PCDH15	9774	chr10:56926411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	HS294T_SKIN	1	1	0.036	TRUE	18	36	1	9	0	FALSE	ACH-000014
HS294T_SKIN	RP11-444D3.1--SOX5	1	8	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	43	1	0.17	0.012	0.0959	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS294T_SKIN	0.17	1	0.1079	TRUE	160	277	29	98	0	FALSE	ACH-000014
HS294T_SKIN	RP11-476K15.1--CTD-2015H3.2	3	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HS294T_SKIN	1	1	0.036	FALSE	0	46	0	73	0	FALSE	ACH-000014
HS294T_SKIN	SAMD5--SASH1	3	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HS294T_SKIN	1	1	0.036	TRUE	53	396	64	110	0	FALSE	ACH-000014
HS294T_SKIN	NRIP1--AF127936.7	2	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	35	0	0.12	1	0.024	0.036	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS294T_SKIN	0.12	1	0.06	FALSE	164	806	69	479	0	FALSE	ACH-000014
HS294T_SKIN	RP11-141M1.3--STARD13	2	3	RP11-141M1.3	8903	chr13:34013828:-	STARD13	26750	chr13:33716510:-	ONLY_REF_SPLICE	YES	9	104	0.36	0.05	0.024	0.036	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HS294T_SKIN	0.05	0.36	0.06	FALSE	1	5	1	7	0	FALSE	ACH-000014
HS294T_SKIN	RP11-285C1.2--TRIM2	2	3	RP11-285C1.2	2218	chr4:153958132:+	TRIM2	15883	chr4:154191490:+	ONLY_REF_SPLICE	YES	8	102	0.38	0.05	0.024	0.036	NEIGHBORS[61177],RP11-285C1.2->chr4:153955363-154012317:+,TRIM2->chr4:154073494-154260472:+,tripartite_motif_containing_2	HS294T_SKIN	0.05	0.38	0.06	FALSE	0	1	0	2	0	FALSE	ACH-000014
HS294T_SKIN	OSBPL5--KCNQ1-AS1	2	2	OSBPL5	2517	chr11:3186453:-	KCNQ1-AS1	32837	chr11:2861672:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0.024	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,KCNQ1-AS1->KCNQ1_antisense_RNA_1,chr11:2861365-2882798:-	HS294T_SKIN	1	1	0.048	TRUE	0	0	0	2	0	TRUE	ACH-000014
HS294T_SKIN	RP11-141M1.3--STARD13	1	6	RP11-141M1.3	8903	chr13:34013828:-	STARD13	19773	chr13:33850344:-	ONLY_REF_SPLICE	NO	9	131	0.44	0.05	0.012	0.0719	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HS294T_SKIN	0.05	0.44	0.0839	FALSE	0	1	0	3	0	FALSE	ACH-000014
HS294T_SKIN	RP11-444D3.1--SOX5	2	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	18992	chr12:23999127:-	ONLY_REF_SPLICE	YES	0	82	1	0.05	0.024	0.024	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS294T_SKIN	0.05	1	0.048	TRUE	3	4	0	10	0	FALSE	ACH-000014
HS294T_SKIN	AC024084.1--AC009784.3	2	1	AC024084.1	3174	chr7:135743253:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0.012	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	HS294T_SKIN	1	1	0.036	FALSE	2	5	0	14	0	FALSE	ACH-000014
HS294T_SKIN	EYA3--ZFAND3	2	1	EYA3	16668	chr1:28319911:-	ZFAND3	33025	chr6:38029369:+	ONLY_REF_SPLICE	YES	16	78	0.16	0.04	0.024	0.012	EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-,ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3	HS294T_SKIN	0.04	0.16	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000014
HS294T_SKIN	RP11-141M1.3--STARD13	1	5	RP11-141M1.3	11074	chr13:33933602:-	STARD13	26750	chr13:33716510:-	ONLY_REF_SPLICE	YES	10	104	0.38	0.05	0.012	0.0599	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HS294T_SKIN	0.05	0.38	0.0719	FALSE	0	1	0	6	0	FALSE	ACH-000014
HS294T_SKIN	RP11-285C1.2--TRIM2	2	1	RP11-285C1.2	2218	chr4:153958132:+	TRIM2	17075	chr4:154197045:+	ONLY_REF_SPLICE	YES	8	195	0.27	0.02	0.024	0.012	NEIGHBORS[61177],RP11-285C1.2->chr4:153955363-154012317:+,TRIM2->chr4:154073494-154260472:+,tripartite_motif_containing_2	HS294T_SKIN	0.02	0.27	0.036	FALSE	0	0	0	1	0	FALSE	ACH-000014
HS294T_SKIN	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	11	1	0.21	0.024	0.012	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS294T_SKIN	0.21	1	0.036	TRUE	465	1949	224	605	0	FALSE	ACH-000014
HS294T_SKIN	CECR7--ZNF717	2	0	CECR7	4006	chr22:17528316:+	ZNF717	15319	chr3:75791016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,ZNF717->chr3:75758794-75834734:-,zinc_finger_protein_717	HS294T_SKIN	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000014
HS294T_SKIN	FAM20C--AP3D1	2	0	FAM20C	5852	chr7:208976:+	AP3D1	42378	chr19:2102267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	HS294T_SKIN	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000014
HS294T_SKIN	HADHA--EIF3B	2	0	HADHA	7852	chr2:26453060:-	EIF3B	26561	chr7:2400345:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	HADHA->chr2:26413504-26467594:-,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_alpha_subunit,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	HS294T_SKIN	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000014
HS294T_SKIN	OSBPL5--KCNQ1-AS1	1	4	OSBPL5	2524	chr11:3186446:-	KCNQ1-AS1	31640	chr11:2880169:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.012	0.0479	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,KCNQ1-AS1->KCNQ1_antisense_RNA_1,chr11:2861365-2882798:-	HS294T_SKIN	1	1	0.0599	TRUE	0	0	0	2	0	TRUE	ACH-000014
HS294T_SKIN	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HS294T_SKIN	1	1	0.024	FALSE	16	356	14	466	0	FALSE	ACH-000014
HS294T_SKIN	AP003900.6--AP000345.1	1	2	AP003900.6	2187	chr21:11172043:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.012	0.024	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	HS294T_SKIN	0.5	1	0.036	TRUE	1	2	0	16	0	FALSE	ACH-000014
HS294T_SKIN	RP11-30J20.1--KHDRBS3	1	2	RP11-30J20.1	2293	chr8:137549302:+	KHDRBS3	26415	chr8:136554897:+	ONLY_REF_SPLICE	NO	28	62	0.1	0.05	0.012	0.024	RP11-30J20.1->chr8:137543041-137997178:+,KHDRBS3->KH_domain_containing,_RNA_binding,_signal_transduction_associated_3,chr8:136469700-136668965:+	HS294T_SKIN	0.05	0.1	0.036	TRUE	0	1	0	1	0	FALSE	ACH-000014
HS294T_SKIN	RP11-30J20.1--KHDRBS3	1	2	RP11-30J20.1	2293	chr8:137549302:+	KHDRBS3	27532	chr8:136560997:+	ONLY_REF_SPLICE	YES	28	104	0.1	0.03	0.012	0.024	RP11-30J20.1->chr8:137543041-137997178:+,KHDRBS3->KH_domain_containing,_RNA_binding,_signal_transduction_associated_3,chr8:136469700-136668965:+	HS294T_SKIN	0.03	0.1	0.036	TRUE	0	0	0	1	0	FALSE	ACH-000014
HS294T_SKIN	RP11-30J20.1--KHDRBS3	1	2	RP11-30J20.1	2293	chr8:137549302:+	KHDRBS3	29761	chr8:136569691:+	ONLY_REF_SPLICE	YES	28	146	0.1	0.02	0.012	0.024	RP11-30J20.1->chr8:137543041-137997178:+,KHDRBS3->KH_domain_containing,_RNA_binding,_signal_transduction_associated_3,chr8:136469700-136668965:+	HS294T_SKIN	0.02	0.1	0.036	TRUE	0	0	0	1	0	FALSE	ACH-000014
HS294T_SKIN	BCAP29--CHMP1A	1	1	BCAP29	2989	chr7:107224427:+	CHMP1A	26891	chr16:89713739:-	ONLY_REF_SPLICE	YES	148	195	0.01	0.01	0.012	0.012	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},BCAP29->B-cell_receptor-associated_protein_29,chr7:107220422-107269615:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HS294T_SKIN	0.01	0.01	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000014
HS294T_SKIN	COL11A1--CHMP1A	1	1	COL11A1	4969	chr1:103540174:-	CHMP1A	68318	chr16:89713739:-	ONLY_REF_SPLICE	YES	709	195	0	0.01	0.012	0.012	COL11A1->Oncogene{Bushman},chr1:103342023-103574052:-,collagen_type_XI_alpha_1,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HS294T_SKIN	0	0.01	0.024	FALSE	0	1	0	1	0	FALSE	ACH-000014
HS294T_SKIN	CTNNB1--ULK4	1	1	CTNNB1	3896	chr3:41241161:+	ULK4	57611	chr3:41705190:-	ONLY_REF_SPLICE	YES	758	1	0	0.67	0.012	0.012	GTEx_v2:{count=8;pct=0.09%;dist=Heart_-_Atrial_Appendage=2,Lung=1,Prostate=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Colon_-_Transverse=1},NEIGHBORS_OVERLAP:+:-:[13497],CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	HS294T_SKIN	0	0.67	0.024	FALSE	0	1	0	2	0	FALSE	ACH-000014
HS294T_SKIN	FN1--SERPINE2	1	1	FN1	33999	chr2:216246935:-	SERPINE2	65227	chr2:224849667:-	ONLY_REF_SPLICE	YES	1380	15942	0	0	0.012	0.012	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2	HS294T_SKIN	0	0	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000014
HS294T_SKIN	MRPS6--CHMP1A	1	1	MRPS6	3207	chr21:35475818:+	CHMP1A	16919	chr16:89713739:-	ONLY_REF_SPLICE	NO	899	195	0	0.01	0.012	0.012	MRPS6->chr21:35445524-35515334:+,mitochondrial_ribosomal_protein_S6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HS294T_SKIN	0	0.01	0.024	FALSE	0	1	0	1	0	FALSE	ACH-000014
HS294T_SKIN	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	27	5	0.07	0.29	0.012	0.012	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS294T_SKIN	0.07	0.29	0.024	FALSE	7	44	2	41	0	FALSE	ACH-000014
HS294T_SKIN	POLR2B--REST	1	1	POLR2B	9157	chr4:57865947:+	REST	32238	chr4:57785953:+	ONLY_REF_SPLICE	YES	234	25	0.01	0.07	0.012	0.012	LOCAL_REARRANGEMENT:+:[41878],POLR2B->chr4:57843888-57897334:+,polymerase_(RNA)_II_subunit_B,REST->Oncogene{Bushman},RE1_silencing_transcription_factor,chr4:57774075-57802010:+	HS294T_SKIN	0.01	0.07	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000014
HS294T_SKIN	PRPF39--FAM179B	1	1	PRPF39	1151	chr14:45553452:+	FAM179B	41856	chr14:45535781:+	ONLY_REF_SPLICE	YES	31	18	0.06	0.1	0.012	0.012	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cortex=1},LOCAL_REARRANGEMENT:+:[9668],PRPF39->chr14:45553302-45585485:+,pre-mRNA_processing_factor_39,FAM179B->chr14:45431411-45543634:+,family_with_sequence_similarity_179_member_B	HS294T_SKIN	0.06	0.1	0.024	TRUE	0	0	0	1	0	FALSE	ACH-000014
HS294T_SKIN	RNF13--WWTR1	1	1	RNF13	1646	chr3:149531140:+	WWTR1	31947	chr3:149290787:-	ONLY_REF_SPLICE	YES	74	324	0.03	0.01	0.012	0.012	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Hypothalamus=1,Esophagus_-_Muscularis=1},LOCAL_INVERSION:+:-:[75994],RNF13->chr3:149530495-149679926:+,ring_finger_protein_13,WWTR1->WW_domain_containing_transcription_regulator_1,chr3:149235022-149454501:-	HS294T_SKIN	0.01	0.03	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000014
HS294T_SKIN	RNF13--WWTR1	1	1	RNF13	1646	chr3:149531140:+	WWTR1	33084	chr3:149260324:-	ONLY_REF_SPLICE	YES	74	338	0.03	0.01	0.012	0.012	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Hypothalamus=1,Esophagus_-_Muscularis=1},LOCAL_INVERSION:+:-:[75994],RNF13->chr3:149530495-149679926:+,ring_finger_protein_13,WWTR1->WW_domain_containing_transcription_regulator_1,chr3:149235022-149454501:-	HS294T_SKIN	0.01	0.03	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000014
HS294T_SKIN	RP11-127B16.1--DTNBP1	1	1	RP11-127B16.1	1827	chr6:93432721:-	DTNBP1	9040	chr6:15638035:-	ONLY_REF_SPLICE	YES	0	51	1	0.04	0.012	0.012	RP11-127B16.1->chr6:93432721-93433547:-,DTNBP1->chr6:15523032-15663289:-,dystrobrevin_binding_protein_1	HS294T_SKIN	0.04	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000014
HS294T_SKIN	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.012	0.012	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS294T_SKIN	1	1	0.024	FALSE	192	492	57	212	0	FALSE	ACH-000014
HS294T_SKIN	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.012	0.012	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS294T_SKIN	1	1	0.024	FALSE	467	2173	244	435	0	FALSE	ACH-000014
KALS1_CENTRAL_NERVOUS_SYSTEM	PTMA--PTMS	299	3	PTMA	6054	chr2:232576687:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	2557	672	0.11	0.31	3.1403	0.0315	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	KALS1_CENTRAL_NERVOUS_SYSTEM	0.11	0.31	3.1718	TRUE	0	0	0	16	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	CECR5--MIAT	139	4	CECR5	2231	chr22:17640016:-	MIAT	21378	chr22:27059280:+	ONLY_REF_SPLICE	YES	5	0	0.97	1	1.4599	0.042	CECR5->Oncogene{Bushman},cat_eye_syndrome_chromosome_region,_candidate_5,chr22:17618401-17646177:-,MIAT->chr22:27042392-27072438:+,myocardial_infarction_associated_transcript_(non-protein_coding)	KALS1_CENTRAL_NERVOUS_SYSTEM	0.97	1	1.5019	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	UBE2L3--CPNE2	81	0	UBE2L3	2429	chr22:21922060:+	CPNE2	15516	chr16:57144620:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.8507	0	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,CPNE2->chr16:57126449-57181878:+,copine_2	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.8507	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	70	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7352	0.3571	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	1.0923	TRUE	508	994	45	981	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	C22orf39--SULT4A1	63	35	C22orf39	11816	chr22:19385515:-	SULT4A1	33579	chr22:44237812:-	ONLY_REF_SPLICE	YES	103	0	0.49	1	0.6617	0.3676	C22orf39->chr22:19338891-19435755:-,chromosome_22_open_reading_frame_39,SULT4A1->chr22:44220389-44258398:-,sulfotransferase_family_4A_member_1	KALS1_CENTRAL_NERVOUS_SYSTEM	0.49	1	1.0293	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	60	44	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	1782	196	0.06	0.35	0.6302	0.4621	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	KALS1_CENTRAL_NERVOUS_SYSTEM	0.06	0.35	1.0923	FALSE	76	19	3	26	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	41	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	261	4	0.15	0.92	0.4306	0.0525	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KALS1_CENTRAL_NERVOUS_SYSTEM	0.15	0.92	0.4831	TRUE	519	3926	326	965	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	PAWR--RP1-78O14.1	32	6	PAWR	15902	chr12:79986391:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	176	1	0.18	0.97	0.3361	0.063	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	KALS1_CENTRAL_NERVOUS_SYSTEM	0.18	0.97	0.3991	FALSE	3	4	0	12	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	RP4-565E6.1--HYDIN	28	8	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.2941	0.084	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	KALS1_CENTRAL_NERVOUS_SYSTEM	0.97	1	0.3781	TRUE	456	1387	91	133	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	23	8	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	112	1	0.22	0.2416	0.084	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	KALS1_CENTRAL_NERVOUS_SYSTEM	0.22	1	0.3256	TRUE	347	1186	183	220	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	25	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2626	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.2626	TRUE	7	10	0	216	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	19	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	43	51	0.45	0.41	0.1996	0.168	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KALS1_CENTRAL_NERVOUS_SYSTEM	0.41	0.45	0.3676	TRUE	267	562	48	632	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	UBE2L3--CPNE2	20	0	UBE2L3	2429	chr22:21922060:+	CPNE2	17177	chr16:57147200:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2101	0	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,CPNE2->chr16:57126449-57181878:+,copine_2	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.2101	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	ADRBK2--GTPBP1	18	7	ADRBK2	15003	chr22:26091181:+	GTPBP1	36424	chr22:39111912:+	ONLY_REF_SPLICE	YES	3	10	0.89	0.71	0.1891	0.0735	ADRBK2->adrenergic,_beta,_receptor_kinase_2,chr22:25960816-26125261:+,GTPBP1->GTP_binding_protein_1,chr22:39101728-39134304:+	KALS1_CENTRAL_NERVOUS_SYSTEM	0.71	0.89	0.2626	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	CPNE2--ACR	17	9	CPNE2	16532	chr16:57161815:+	ACR	27220	chr22:51177699:+	ONLY_REF_SPLICE	YES	97	0	0.21	1	0.1785	0.0945	CPNE2->chr16:57126449-57181878:+,copine_2,ACR->acrosin,chr22:51176624-51183762:+	KALS1_CENTRAL_NERVOUS_SYSTEM	0.21	1	0.273	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	17	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1785	0.063	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KALS1_CENTRAL_NERVOUS_SYSTEM	0.96	1	0.2415	FALSE	499	1288	110	792	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	RP11-494M8.4--OVCH2	14	12	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	3	0	0.9	1	0.147	0.126	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	KALS1_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.273	FALSE	32	0	0	22	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	9	30	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	2064	196	0.02	0.17	0.0945	0.3151	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	KALS1_CENTRAL_NERVOUS_SYSTEM	0.02	0.17	0.4096	FALSE	38	10	2	29	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	13	4	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1365	0.042	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	KALS1_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.1785	TRUE	6	15	3	35	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.126	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.126	TRUE	0	0	0	434	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	12	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.126	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.126	TRUE	0	0	0	434	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	8	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	40	52	0.33	0.28	0.084	0.126	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KALS1_CENTRAL_NERVOUS_SYSTEM	0.28	0.33	0.21	TRUE	267	562	48	632	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	10	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	47	1	0.23	0.105	0.042	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KALS1_CENTRAL_NERVOUS_SYSTEM	0.23	1	0.147	TRUE	465	1949	224	605	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	10	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.105	0.0105	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KALS1_CENTRAL_NERVOUS_SYSTEM	0.85	1	0.1155	FALSE	292	1546	117	613	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	ZNF354A--COL23A1	8	8	ZNF354A	5291	chr5:178152377:-	COL23A1	17133	chr5:177733920:-	ONLY_REF_SPLICE	YES	19	0	0.46	1	0.084	0.084	ZNF354A->chr5:178138593-178157703:-,zinc_finger_protein_354A,COL23A1->chr5:177664619-178017556:-,collagen_type_XXIII_alpha_1	KALS1_CENTRAL_NERVOUS_SYSTEM	0.46	1	0.168	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	7	10	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	140	0.85	0.11	0.0735	0.105	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KALS1_CENTRAL_NERVOUS_SYSTEM	0.11	0.85	0.1785	FALSE	16	356	14	466	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	9	2	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0945	0.021	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	KALS1_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.1155	TRUE	4	2	0	28	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	CMC1--ZCWPW2	8	2	CMC1	3625	chr3:28304871:+	ZCWPW2	32666	chr3:28533618:+	ONLY_REF_SPLICE	YES	110	1	0.08	0.91	0.084	0.021	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[24004],CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	KALS1_CENTRAL_NERVOUS_SYSTEM	0.08	0.91	0.105	FALSE	0	2	0	2	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	8	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.084	0.021	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.105	FALSE	499	1288	110	792	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	7	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.65	0.0735	0.063	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KALS1_CENTRAL_NERVOUS_SYSTEM	0.65	1	0.1365	TRUE	458	1351	185	561	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	COL1A1--OAZ1	8	1	COL1A1	14516	chr17:48265259:-	OAZ1	25275	chr19:2272634:+	INCL_NON_REF_SPLICE	NO	2708	3138	0	0	0.084	0.0105	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1	KALS1_CENTRAL_NERVOUS_SYSTEM	0	0	0.0945	FALSE	0	0	0	1	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--IFI27	5	11	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	3955	6	0	0.73	0.0525	0.1155	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	KALS1_CENTRAL_NERVOUS_SYSTEM	0	0.73	0.168	TRUE	0	2	0	13	2	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	POLR2F--RP11-782C8.5	6	5	POLR2F	5486	chr22:38355483:+	RP11-782C8.5	24746	chr1:143233121:-	ONLY_REF_SPLICE	YES	176	0	0.06	1	0.063	0.0525	POLR2F->chr22:38348614-38437922:+,polymerase_(RNA)_II_subunit_F,RP11-782C8.5->chr1:143211628-143240439:-	KALS1_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.1155	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	CMC1--ZCWPW2	6	3	CMC1	3625	chr3:28304871:+	ZCWPW2	31548	chr3:28520305:+	ONLY_REF_SPLICE	YES	110	1	0.08	0.9	0.063	0.0315	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[24004],CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	KALS1_CENTRAL_NERVOUS_SYSTEM	0.08	0.9	0.0945	FALSE	0	0	0	2	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	GTPBP1--GSTT2	6	3	GTPBP1	3246	chr22:39104961:+	GSTT2	23762	chr22:24322327:+	INCL_NON_REF_SPLICE	YES	11	0	0.45	1	0.063	0.0315	GTPBP1->GTP_binding_protein_1,chr22:39101728-39134304:+,GSTT2->chr22:24322339-24326106:+,glutathione_S-transferase_theta_2_(gene/pseudogene)	KALS1_CENTRAL_NERVOUS_SYSTEM	0.45	1	0.0945	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	PTMA--PTMS	6	2	PTMA	6054	chr2:232576687:+	PTMS	13958	chr12:6879323:+	INCL_NON_REF_SPLICE	YES	2557	775	0	0.01	0.063	0.021	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	KALS1_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.084	FALSE	0	0	0	16	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	RP11-494M8.4--OVCH2	3	14	RP11-494M8.4	10901	chr11:7775931:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0.147	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1785	FALSE	16	1	1	11	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.042	0.0945	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KALS1_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.1365	FALSE	499	1288	110	792	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	DNAJB11--RP11-134F2.2	6	0	DNAJB11	6385	chr3:186295589:+	RP11-134F2.2	19849	chr3:186359917:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.063	0	LOCAL_INVERSION:+:-:[44238],DNAJB11->DnaJ_heat_shock_protein_family_(Hsp40)_member_B11,chr3:186285192-186315061:+,RP11-134F2.2->chr3:186359299-186383496:-	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.063	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	PTMA--PTMS	5	3	PTMA	6053	chr2:232576686:+	PTMS	13737	chr12:6879102:+	INCL_NON_REF_SPLICE	YES	2547	595	0	0.01	0.0525	0.0315	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	KALS1_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.084	FALSE	0	0	0	16	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	5	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0525	0.021	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0735	FALSE	499	1288	110	792	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	4	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.042	0.0525	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0945	TRUE	274	363	69	150	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	VIM--TMSB4X	5	1	VIM	2142	chr10:17271399:+	TMSB4X	12231	chrX:12993253:+	INCL_NON_REF_SPLICE	YES	1939	0	0	1	0.0525	0.0105	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	KALS1_CENTRAL_NERVOUS_SYSTEM	0	1	0.063	FALSE	0	0	0	3	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	4	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	19	0	0.3	1	0.042	0.042	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KALS1_CENTRAL_NERVOUS_SYSTEM	0.3	1	0.084	FALSE	125	705	46	456	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	AP000350.4--PKM	3	7	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	11	1	0.48	0.0315	0.0735	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	KALS1_CENTRAL_NERVOUS_SYSTEM	0.48	1	0.105	TRUE	0	0	0	14	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	1	15	COL8A1	12080	chr3:99463865:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	NO	2208	196	0.01	0.08	0.0105	0.1575	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	KALS1_CENTRAL_NERVOUS_SYSTEM	0.01	0.08	0.168	FALSE	4	4	0	17	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0.0735	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.105	FALSE	499	1288	110	792	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	3	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0.063	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0945	TRUE	477	1352	189	275	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	VTI1A--RP11-57H14.3	4	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	51	0	0.11	1	0.042	0.021	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	KALS1_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.063	FALSE	272	151	14	158	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	GTPBP1--GSTT2	4	1	GTPBP1	3246	chr22:39104961:+	GSTT2	24574	chr22:24323139:+	ONLY_REF_SPLICE	YES	11	18	0.31	0.22	0.042	0.0105	GTPBP1->GTP_binding_protein_1,chr22:39101728-39134304:+,GSTT2->chr22:24322339-24326106:+,glutathione_S-transferase_theta_2_(gene/pseudogene)	KALS1_CENTRAL_NERVOUS_SYSTEM	0.22	0.31	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	UBE2L3--CPNE2	4	1	UBE2L3	3035	chr22:21922666:+	CPNE2	15516	chr16:57144620:+	ONLY_REF_SPLICE	YES	17	3	0.23	0.62	0.042	0.0105	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,CPNE2->chr16:57126449-57181878:+,copine_2	KALS1_CENTRAL_NERVOUS_SYSTEM	0.23	0.62	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL7A1	3	4	COL1A1	14895	chr17:48264880:-	COL7A1	40073	chr3:48614460:-	INCL_NON_REF_SPLICE	NO	2481	268	0	0.03	0.0315	0.042	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	KALS1_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0735	FALSE	0	0	0	2	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	DNAJB11--RP11-134F2.2	4	0	DNAJB11	5252	chr3:186293726:+	RP11-134F2.2	19849	chr3:186359917:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.042	0	LOCAL_INVERSION:+:-:[44238],DNAJB11->DnaJ_heat_shock_protein_family_(Hsp40)_member_B11,chr3:186285192-186315061:+,RP11-134F2.2->chr3:186359299-186383496:-	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	GTPBP1--GSTT2	4	0	GTPBP1	1425	chr22:39102152:+	GSTT2	24574	chr22:24323139:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.042	0	GTPBP1->GTP_binding_protein_1,chr22:39101728-39134304:+,GSTT2->chr22:24322339-24326106:+,glutathione_S-transferase_theta_2_(gene/pseudogene)	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	ZNF354A--COL23A1	2	8	ZNF354A	5291	chr5:178152377:-	COL23A1	15924	chr5:177950714:-	ONLY_REF_SPLICE	YES	19	0	0.34	1	0.021	0.084	ZNF354A->chr5:178138593-178157703:-,zinc_finger_protein_354A,COL23A1->chr5:177664619-178017556:-,collagen_type_XXIII_alpha_1	KALS1_CENTRAL_NERVOUS_SYSTEM	0.34	1	0.105	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	11	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	140	0.86	0.08	0.0105	0.1155	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KALS1_CENTRAL_NERVOUS_SYSTEM	0.08	0.86	0.126	FALSE	2	31	0	60	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	10	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	3	49	0.79	0.18	0.0105	0.105	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KALS1_CENTRAL_NERVOUS_SYSTEM	0.18	0.79	0.1155	FALSE	0	23	1	67	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	CMC1--ZCWPW2	3	1	CMC1	1229	chr3:28283303:+	ZCWPW2	32666	chr3:28533618:+	ONLY_REF_SPLICE	YES	134	1	0.03	0.8	0.0315	0.0105	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[24004],CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	KALS1_CENTRAL_NERVOUS_SYSTEM	0.03	0.8	0.042	FALSE	0	0	0	2	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	PPP1R12C--CNN2	3	1	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	154	1243	0.03	0	0.0315	0.0105	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	KALS1_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.042	FALSE	35	34	3	30	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	USP10--COTL1	3	1	USP10	1134	chr16:84733717:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	66	754	0.06	0.01	0.0315	0.0105	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	KALS1_CENTRAL_NERVOUS_SYSTEM	0.01	0.06	0.042	FALSE	0	0	0	7	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	VIM--TMSB4X	3	1	VIM	2162	chr10:17271419:+	TMSB4X	13357	chrX:12994379:+	INCL_NON_REF_SPLICE	YES	4332	309	0	0.01	0.0315	0.0105	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	KALS1_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.042	FALSE	0	0	0	15	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0315	FALSE	499	1288	110	792	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	PIM3--C22orf24	3	0	PIM3	1520	chr22:50354680:+	C22orf24	9194	chr22:32334101:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0	PIM3->Oncogene{Bushman},Pim-3_proto-oncogene,_serine/threonine_kinase,chr22:50354161-50357728:+,C22orf24->chr22:32329507-32341504:-,chromosome_22_open_reading_frame_24	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	34	0	0.17	1	0.0105	0.063	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KALS1_CENTRAL_NERVOUS_SYSTEM	0.17	1	0.0735	FALSE	164	806	69	479	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	2	2	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.021	0.021	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	KALS1_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.042	TRUE	0	7	2	11	5	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	RP11-494M8.4--OVCH2	2	2	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	13	0	0.24	1	0.021	0.021	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	KALS1_CENTRAL_NERVOUS_SYSTEM	0.24	1	0.042	FALSE	60	13	8	23	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	YWHAE--CRK	2	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1479	106	0	0.04	0.021	0.021	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	KALS1_CENTRAL_NERVOUS_SYSTEM	0	0.04	0.042	FALSE	6	50	7	115	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	1	5	CTD-2337A12.1	4828	chr5:95715356:+	CAST	23932	chr5:96058343:+	ONLY_REF_SPLICE	NO	0	345	1	0.02	0.0105	0.0525	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	KALS1_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.063	TRUE	2	9	1	4	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	EFCAB11--RP11-944C7.1	2	0	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	31	91	1	18	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	ERGIC2--NPIPB11	2	0	ERGIC2	7282	chr12:29519810:-	NPIPB11	24651	chr16:29405397:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	ERGIC2->ERGIC_and_golgi_2,chr12:29490285-29534122:-,NPIPB11->chr16:29392675-29415350:-,nuclear_pore_complex_interacting_protein_family_member_B11	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	IFT57--GOLGB1	2	0	IFT57	7148	chr3:107910368:-	GOLGB1	21726	chr3:121445888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	IFT57->chr3:107879659-107941417:-,intraflagellar_transport_57,GOLGB1->chr3:121382046-121468602:-,golgin_B1	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	IVNS1ABP--LOXL3	2	0	IVNS1ABP	10586	chr1:185268842:-	LOXL3	20628	chr2:74777475:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein,LOXL3->Oncogene{Bushman},chr2:74759541-74782817:-,lysyl_oxidase_like_3	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	LHFPL2--AP3B1	2	0	LHFPL2	7033	chr5:77928087:-	AP3B1	30357	chr5:77512061:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	PRRG1--LANCL3	2	0	PRRG1	4586	chrX:37285253:+	LANCL3	17056	chrX:37514941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	PRRG1->chrX:37208528-37316548:+,proline_rich_and_Gla_domain_1,LANCL3->LanC_like_3,chrX:37430822-37543716:+	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	1	2	0	5	2	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	PTMA--PTMS	2	0	PTMA	6593	chr2:232577226:+	PTMS	14193	chr12:6879558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	16	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	2	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	254	575	65	124	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	SBF1--RFPL3S	2	0	SBF1	14981	chr22:50893243:-	RFPL3S	26064	chr22:32766928:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	SBF1->SET_binding_factor_1,chr22:50883429-50913454:-,RFPL3S->RFPL3_antisense,chr22:32755893-32778039:-	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	SPIN1--GNAS	2	0	SPIN1	1120	chr9:91003453:+	GNAS	33527	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx&tcga_normals:1/3694=0.03%,SPIN1->chr9:91003334-91093609:+,spindlin_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	1	0	4	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	TGFBR1--MSANTD3	2	0	TGFBR1	2265	chr9:101867584:+	MSANTD3	23232	chr9:103204188:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	TGFBR1->Oncogene{Bushman},chr9:101866320-101916474:+,transforming_growth_factor_beta_receptor_1,MSANTD3->Myb/SANT_DNA_binding_domain_containing_3,chr9:103189438-103213511:+	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	TMEM161B--AMY2B	2	0	TMEM161B	1756	chr5:87564538:-	AMY2B	29706	chr1:104108057:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	TMEM161B->chr5:87485450-87565293:-,transmembrane_protein_161B,AMY2B->amylase,_alpha_2B_(pancreatic),chr1:104096437-104122156:+	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	ULK4--SEMA3C	2	0	ULK4	3791	chr3:41979590:-	SEMA3C	56802	chr7:80458061:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4,SEMA3C->chr7:80371854-80551675:-,semaphorin_3C	KALS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	RP11-494M8.4--OVCH2	1	2	RP11-494M8.4	4247	chr11:7902636:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	NO	7	0	0.3	1	0.0105	0.021	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	KALS1_CENTRAL_NERVOUS_SYSTEM	0.3	1	0.0315	FALSE	6	0	0	3	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	AGRN--UBC	1	1	AGRN	2513	chr1:957842:+	UBC	26836	chr12:125398320:-	ONLY_REF_SPLICE	YES	747	65	0	0.03	0.0105	0.0105	AGRN->agrin,chr1:955503-991496:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	KALS1_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	CANX--SPARC	1	1	CANX	15870	chr5:179150020:+	SPARC	29812	chr5:151054235:-	ONLY_REF_SPLICE	YES	1359	4822	0	0	0.0105	0.0105	CANX->calnexin,chr5:179105629-179157926:+,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	KALS1_CENTRAL_NERVOUS_SYSTEM	0	0	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	CMC1--ZCWPW2	1	1	CMC1	1229	chr3:28283303:+	ZCWPW2	31548	chr3:28520305:+	ONLY_REF_SPLICE	YES	134	1	0.01	0.67	0.0105	0.0105	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[24004],CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	KALS1_CENTRAL_NERVOUS_SYSTEM	0.01	0.67	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	CMC1--ZCWPW2	1	1	CMC1	2356	chr3:28295256:+	ZCWPW2	32666	chr3:28533618:+	ONLY_REF_SPLICE	YES	140	1	0.01	0.67	0.0105	0.0105	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[24004],CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	KALS1_CENTRAL_NERVOUS_SYSTEM	0.01	0.67	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	FGFR2--COL14A1	1	1	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	36	26	0.05	0.07	0.0105	0.0105	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	KALS1_CENTRAL_NERVOUS_SYSTEM	0.05	0.07	0.021	TRUE	0	0	0	32	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	IMMP2L--DOCK4	1	1	IMMP2L	4976	chr7:111127294:-	DOCK4	52051	chr7:111430661:-	ONLY_REF_SPLICE	NO	27	8	0.07	0.2	0.0105	0.0105	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	KALS1_CENTRAL_NERVOUS_SYSTEM	0.07	0.2	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	PAWR--RP1-78O14.1	1	1	PAWR	13714	chr12:79990291:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	291	1	0.01	0.67	0.0105	0.0105	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	KALS1_CENTRAL_NERVOUS_SYSTEM	0.01	0.67	0.021	FALSE	1	1	0	4	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	RALY--EIF2S2	1	1	RALY	3636	chr20:32619410:+	EIF2S2	18823	chr20:32693351:-	ONLY_REF_SPLICE	YES	415	537	0	0	0.0105	0.0105	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},NEIGHBORS_OVERLAP:+:-:[20010],RALY->RALY_heterogeneous_nuclear_ribonucleoprotein,chr20:32581452-32696114:+,EIF2S2->chr20:32676104-32700138:-,eukaryotic_translation_initiation_factor_2_subunit_beta	KALS1_CENTRAL_NERVOUS_SYSTEM	0	0	0.021	FALSE	0	1	0	5	0	FALSE	ACH-000231
KALS1_CENTRAL_NERVOUS_SYSTEM	TAOK1--ZNF384	1	1	TAOK1	2787	chr17:27778698:+	ZNF384	40882	chr12:6797392:-	ONLY_REF_SPLICE	YES	30	63	0.06	0.03	0.0105	0.0105	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,ZNF384->Oncogene{Bushman},chr12:6775643-6798738:-,zinc_finger_protein_384	KALS1_CENTRAL_NERVOUS_SYSTEM	0.03	0.06	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000231
HCC1143_BREAST	TMEM241--HM13	257	181	TMEM241	17323	chr18:20889644:-	HM13	35387	chr20:30132750:+	ONLY_REF_SPLICE	YES	47	830	0.9	0.35	3.1443	2.2145	{Klijn_CCL:Breast=1},TMEM241->chr18:20777108-21017925:-,transmembrane_protein_241,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	HCC1143_BREAST	0.35	0.9	5.3588	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	FANCD2--MTMR14	155	69	FANCD2	29562	chr3:10123148:+	MTMR14	57066	chr3:9719001:+	ONLY_REF_SPLICE	YES	123	52	0.65	0.81	1.8964	0.8442	FANCD2->ArcherDX_panel,Fanconi_anemia_complementation_group_D2,FoundationOne_panel,Oncogene{Bushman},chr3:10068098-10143614:+,MTMR14->chr3:9691117-9744077:+,myotubularin_related_protein_14	HCC1143_BREAST	0.65	0.81	2.7406	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	KANSL1--ARL17B	107	86	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	58	65	0.77	0.75	1.3091	1.0522	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC1143_BREAST	0.75	0.77	2.3613	TRUE	181	1564	124	196	0	FALSE	ACH-000374
HCC1143_BREAST	TIMM23B--LINC00843	109	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3336	0.416	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1143_BREAST	1	1	1.7496	TRUE	508	994	45	981	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND6--MT-TE	59	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7218	0.0367	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1143_BREAST	1	1	0.7585	FALSE	499	1288	110	792	0	FALSE	ACH-000374
HCC1143_BREAST	TIMM23--RP11-464F9.1	57	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	309	16	0.16	0.79	0.6974	0.0367	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC1143_BREAST	0.16	0.79	0.7341	TRUE	519	3926	326	965	0	FALSE	ACH-000374
HCC1143_BREAST	RP11-123O10.4--GRIP1	44	31	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5383	0.3793	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1143_BREAST	1	1	0.9176	FALSE	416	2512	207	587	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND6--MT-TE	47	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.575	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1143_BREAST	1	1	0.575	FALSE	499	1288	110	792	0	FALSE	ACH-000374
HCC1143_BREAST	FAM168A--RAB6A	25	33	FAM168A	1267	chr11:73308968:-	RAB6A	29632	chr11:73390765:-	ONLY_REF_SPLICE	YES	55	202	0.51	0.22	0.3059	0.4037	LOCAL_REARRANGEMENT:-:[77449],FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A,RAB6A->RAB6A,_member_RAS_oncogene_family,chr11:73386683-73472182:-	HCC1143_BREAST	0.22	0.51	0.7096	TRUE	0	1	0	2	1	TRUE	ACH-000374
HCC1143_BREAST	MT-TA--MT-TC	32	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3915	0.0367	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1143_BREAST	1	1	0.4282	FALSE	462	80	0	856	0	FALSE	ACH-000374
HCC1143_BREAST	MTA1--INF2	30	1	MTA1	1242	chr14:105886400:+	INF2	27021	chr14:105172372:+	ONLY_REF_SPLICE	YES	0	509	1	0.06	0.367	0.0122	MTA1->Oncogene{Bushman},chr14:105886159-105937066:+,metastasis_associated_1,INF2->chr14:105155943-105185942:+,inverted_formin,_FH2_and_WH2_domain_containing	HCC1143_BREAST	0.06	1	0.3792	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	TMEM241--HM13	4	100	TMEM241	17323	chr18:20889644:-	HM13	37771	chr20:30136480:+	ONLY_REF_SPLICE	YES	47	1382	0.69	0.07	0.0489	1.2235	{Klijn_CCL:Breast=1},TMEM241->chr18:20777108-21017925:-,transmembrane_protein_241,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	HCC1143_BREAST	0.07	0.69	1.2724	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	MT-ND6--MT-TE	26	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3181	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1143_BREAST	1	1	0.3181	FALSE	499	1288	110	792	0	FALSE	ACH-000374
HCC1143_BREAST	TMEM241--HM13	2	89	TMEM241	17323	chr18:20889644:-	HM13	38123	chr20:30136832:+	ONLY_REF_SPLICE	YES	47	1269	0.66	0.07	0.0245	1.0889	{Klijn_CCL:Breast=1},TMEM241->chr18:20777108-21017925:-,transmembrane_protein_241,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	HCC1143_BREAST	0.07	0.66	1.1134	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	NIPA2--POLA1	24	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2936	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	HCC1143_BREAST	1	1	0.2936	TRUE	46	1352	75	139	0	FALSE	ACH-000374
HCC1143_BREAST	C15orf57--CBX3	18	22	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	41	18	0.49	0.69	0.2202	0.2692	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1143_BREAST	0.49	0.69	0.4894	TRUE	267	562	48	632	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND4--MT-ND4L	12	44	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	0	0.93	1	0.1468	0.5383	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1143_BREAST	0.93	1	0.6851	FALSE	344	821	44	306	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND4--MT-ND4L	4	69	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	13	0	0.85	1	0.0489	0.8442	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1143_BREAST	0.85	1	0.8931	FALSE	344	826	44	306	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND4--MT-ND4L	3	68	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	13	0	0.85	1	0.0367	0.832	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1143_BREAST	0.85	1	0.8687	FALSE	344	826	44	306	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND4--MT-ND4L	3	66	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	9	0	0.88	1	0.0367	0.8075	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1143_BREAST	0.88	1	0.8442	FALSE	344	826	44	306	0	FALSE	ACH-000374
HCC1143_BREAST	NRIP1--AF127936.7	19	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2325	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1143_BREAST	1	1	0.2325	FALSE	292	1546	117	613	0	FALSE	ACH-000374
HCC1143_BREAST	MT-TA--MT-TC	18	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2202	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1143_BREAST	1	1	0.2202	FALSE	462	80	0	856	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND4--MT-ND4L	15	3	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	69	0	0.21	1	0.1835	0.0367	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1143_BREAST	0.21	1	0.2202	FALSE	344	827	44	306	0	FALSE	ACH-000374
HCC1143_BREAST	ZNRD1-AS1--PPP2R5A	12	15	ZNRD1-AS1	10116	chr6:30002685:-	PPP2R5A	37126	chr1:212502477:+	ONLY_REF_SPLICE	YES	3	137	0.9	0.16	0.1468	0.1835	ZNRD1-AS1->chr6:29968788-30029417:-,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	HCC1143_BREAST	0.16	0.9	0.3303	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	MYO9A--HEXA	12	14	MYO9A	10351	chr15:72300167:-	HEXA	70166	chr15:72654807:-	ONLY_REF_SPLICE	YES	17	363	0.6	0.07	0.1468	0.1713	MYO9A->chr15:72114632-72410918:-,myosin_IXA,HEXA->chr15:72635775-72668817:-,hexosaminidase_subunit_alpha	HCC1143_BREAST	0.07	0.6	0.3181	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	MT-ND6--MT-TE	14	3	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1713	0.0367	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1143_BREAST	1	1	0.208	FALSE	499	1288	110	792	0	FALSE	ACH-000374
HCC1143_BREAST	MYO9A--HEXA	12	9	MYO9A	10351	chr15:72300167:-	HEXA	75093	chr15:72648958:-	ONLY_REF_SPLICE	YES	17	349	0.55	0.06	0.1468	0.1101	MYO9A->chr15:72114632-72410918:-,myosin_IXA,HEXA->chr15:72635775-72668817:-,hexosaminidase_subunit_alpha	HCC1143_BREAST	0.06	0.55	0.2569	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	COL6A2--PRDM15	14	0	COL6A2	1077	chr21:47518087:+	PRDM15	43887	chr21:43243805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1713	0	COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,PRDM15->PR_domain_15,chr21:43218385-43299591:-	HCC1143_BREAST	1	1	0.1713	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	MT-ND4--MT-ND4L	3	42	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	85	0	0.35	1	0.0367	0.5139	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1143_BREAST	0.35	1	0.5506	FALSE	344	827	44	306	0	FALSE	ACH-000374
HCC1143_BREAST	NRIP1--AF127936.7	12	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	50	0	0.25	1	0.1468	0.0612	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1143_BREAST	0.25	1	0.208	FALSE	125	705	46	456	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND4--MT-ND4L	9	15	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	853	0	0.03	1	0.1101	0.1835	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1143_BREAST	0.03	1	0.2936	FALSE	344	827	44	306	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND4--MT-ND4L	10	7	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	23	0	0.42	1	0.1223	0.0856	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1143_BREAST	0.42	1	0.2079	FALSE	344	826	44	306	0	FALSE	ACH-000374
HCC1143_BREAST	PPP1R12B--LGR6	11	3	PPP1R12B	18035	chr1:202418299:+	LGR6	54334	chr1:202194551:+	ONLY_REF_SPLICE	YES	13	0	0.52	1	0.1346	0.0367	LOCAL_REARRANGEMENT:+:[28918],PPP1R12B->chr1:202317827-202561834:+,protein_phosphatase_1_regulatory_subunit_12B,LGR6->Oncogene{Bushman},chr1:202163029-202288909:+,leucine-rich_repeat_containing_G_protein-coupled_receptor_6	HCC1143_BREAST	0.52	1	0.1713	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	HELZ--HECW1	9	9	HELZ	38385	chr17:65103285:-	HECW1	78571	chr7:43519209:+	ONLY_REF_SPLICE	YES	43	1	0.3	0.95	0.1101	0.1101	{Klijn_CCL:Breast=1},HELZ->chr17:65066554-65242105:-,helicase_with_zinc_finger,HECW1->HECT,_C2_and_WW_domain_containing_E3_ubiquitin_protein_ligase_1,chr7:43152198-43605600:+	HCC1143_BREAST	0.3	0.95	0.2202	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	MT-ND4--MT-ND4L	7	15	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	15857	0	0	1	0.0856	0.1835	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1143_BREAST	0	1	0.2691	FALSE	328	800	43	304	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND3--MT-ATP8	10	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1223	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1143_BREAST	1	1	0.1223	FALSE	351	233	23	137	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND4--MT-ND4L	5	19	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.0612	0.2325	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1143_BREAST	0.86	1	0.2937	FALSE	344	821	44	306	0	FALSE	ACH-000374
HCC1143_BREAST	NRIP1--AF127936.7	7	9	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	87	0	0.16	1	0.0856	0.1101	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1143_BREAST	0.16	1	0.1957	FALSE	164	806	69	479	0	FALSE	ACH-000374
HCC1143_BREAST	C15orf57--CBX3	5	15	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	43	18	0.32	0.53	0.0612	0.1835	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1143_BREAST	0.32	0.53	0.2447	TRUE	267	562	48	632	0	FALSE	ACH-000374
HCC1143_BREAST	PRR16--CTD-2334D19.1	6	11	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	26	0	0.4	1	0.0734	0.1346	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HCC1143_BREAST	0.4	1	0.208	FALSE	21	45	1	60	0	FALSE	ACH-000374
HCC1143_BREAST	PRDM15--EPHB1	8	0	PRDM15	1213	chr21:43299379:-	EPHB1	72178	chr3:134967158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0979	0	PRDM15->PR_domain_15,chr21:43218385-43299591:-,EPHB1->ArcherDX_panel,EPH_receptor_B1,FoundationOne_panel,chr3:134316643-134979309:+	HCC1143_BREAST	1	1	0.0979	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	MIPEP--FAM65B	7	2	MIPEP	19046	chr13:24380089:-	FAM65B	30906	chr6:24876045:-	ONLY_REF_SPLICE	YES	26	0	0.26	1	0.0856	0.0245	MIPEP->chr13:24304328-24463558:-,mitochondrial_intermediate_peptidase,FAM65B->chr6:24797601-25042238:-,family_with_sequence_similarity_65_member_B	HCC1143_BREAST	0.26	1	0.1101	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	PRR16--CTD-2334D19.1	5	7	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	41	0	0.23	1	0.0612	0.0856	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HCC1143_BREAST	0.23	1	0.1468	FALSE	56	216	12	147	0	FALSE	ACH-000374
HCC1143_BREAST	LINC00511--RMDN2	5	6	LINC00511	8867	chr17:70588342:-	RMDN2	34557	chr2:38156405:+	ONLY_REF_SPLICE	YES	262	18	0.04	0.38	0.0612	0.0734	LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,RMDN2->chr2:38150330-38294285:+,regulator_of_microtubule_dynamics_2	HCC1143_BREAST	0.04	0.38	0.1346	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	TMBIM4--GRIP1	4	10	TMBIM4	7547	chr12:66541688:-	GRIP1	23966	chr12:66990707:-	ONLY_REF_SPLICE	YES	678	0	0.02	1	0.0489	0.1223	TMBIM4->chr12:66517697-66563765:-,chr12:66517709-66563852:-,transmembrane_BAX_inhibitor_motif_containing_4,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1143_BREAST	0.02	1	0.1712	TRUE	0	0	0	1	0	FALSE	ACH-000374
HCC1143_BREAST	FANCD2--MTMR14	1	21	FANCD2	29562	chr3:10123148:+	MTMR14	58808	chr3:9724862:+	ONLY_REF_SPLICE	YES	123	156	0.15	0.12	0.0122	0.2569	FANCD2->ArcherDX_panel,Fanconi_anemia_complementation_group_D2,FoundationOne_panel,Oncogene{Bushman},chr3:10068098-10143614:+,MTMR14->chr3:9691117-9744077:+,myotubularin_related_protein_14	HCC1143_BREAST	0.12	0.15	0.2691	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	MT-ND6--MT-TE	5	4	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.0612	0.0489	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1143_BREAST	0.69	1	0.1101	FALSE	499	1288	110	792	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0734	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1143_BREAST	1	1	0.0734	FALSE	499	1288	110	792	0	FALSE	ACH-000374
HCC1143_BREAST	ZNRD1-AS1--PPP2R5A	2	16	ZNRD1-AS1	10116	chr6:30002685:-	PPP2R5A	33789	chr1:212480125:+	ONLY_REF_SPLICE	YES	3	136	0.86	0.12	0.0245	0.1958	ZNRD1-AS1->chr6:29968788-30029417:-,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	HCC1143_BREAST	0.12	0.86	0.2203	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	ZNRD1-AS1--PPP2R5A	5	4	ZNRD1-AS1	4526	chr6:30025892:-	PPP2R5A	37126	chr1:212502477:+	ONLY_REF_SPLICE	YES	17	137	0.35	0.06	0.0612	0.0489	ZNRD1-AS1->chr6:29968788-30029417:-,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	HCC1143_BREAST	0.06	0.35	0.1101	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	MT-ND4--MT-ND4L	3	11	MT-ND4	1201	chrM:10960:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	21	0	0.4	1	0.0367	0.1346	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1143_BREAST	0.4	1	0.1713	FALSE	344	826	44	306	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND5--MT-ND6	5	3	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	4725	1	0	0.0612	0.0367	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HCC1143_BREAST	0	1	0.0979	FALSE	26	124	4	93	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND6--MT-TE	5	3	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0612	0.0367	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1143_BREAST	1	1	0.0979	FALSE	499	1288	110	792	0	FALSE	ACH-000374
HCC1143_BREAST	RP11-123O10.4--GRIP1	2	15	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.0245	0.1835	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1143_BREAST	0.94	1	0.208	FALSE	93	270	15	244	0	FALSE	ACH-000374
HCC1143_BREAST	MT-TA--MT-TC	5	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0612	0.0245	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1143_BREAST	1	1	0.0857	FALSE	462	80	0	856	0	FALSE	ACH-000374
HCC1143_BREAST	CPSF6--CNOT2	4	1	CPSF6	11046	chr12:69656342:+	CNOT2	49978	chr12:70747609:+	ONLY_REF_SPLICE	YES	177	167	0.03	0.03	0.0489	0.0122	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+	HCC1143_BREAST	0.03	0.03	0.0611	TRUE	0	2	0	2	2	TRUE	ACH-000374
HCC1143_BREAST	ERBB2IP--NLN	4	1	ERBB2IP	1332	chr5:65222634:+	NLN	40884	chr5:65054394:+	ONLY_REF_SPLICE	YES	218	19	0.02	0.21	0.0489	0.0122	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_REARRANGEMENT:+:[54750],ERBB2IP->chr5:65222303-65378377:+,NLN->chr5:65018023-65167553:+,neurolysin	HCC1143_BREAST	0.02	0.21	0.0611	TRUE	0	1	0	1	0	FALSE	ACH-000374
HCC1143_BREAST	KANSL1--ARL17B	1	13	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	71	65	0.16	0.18	0.0122	0.1591	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC1143_BREAST	0.16	0.18	0.1713	TRUE	105	90	7	93	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND6--MT-TE	4	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0489	0.0122	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1143_BREAST	0.83	1	0.0611	FALSE	499	1288	110	792	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND3--MT-ATP8	4	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1143_BREAST	1	1	0.0489	FALSE	351	233	23	137	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND4--MT-ND4L	3	4	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	8	0	0.47	1	0.0367	0.0489	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1143_BREAST	0.47	1	0.0856	FALSE	344	826	44	306	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND4--MT-ND4L	4	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1143_BREAST	1	1	0.0489	FALSE	344	821	44	306	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND6--MT-TE	3	4	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0367	0.0489	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1143_BREAST	0.78	1	0.0856	FALSE	499	1288	110	792	0	FALSE	ACH-000374
HCC1143_BREAST	MYH9--PLCB1	4	0	MYH9	31547	chr22:36689867:-	PLCB1	84031	chr20:8862258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	HCC1143_BREAST	1	1	0.0489	TRUE	0	0	0	2	0	TRUE	ACH-000374
HCC1143_BREAST	MT-ND4--MT-ND4L	3	3	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	20	0	0.23	1	0.0367	0.0367	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1143_BREAST	0.23	1	0.0734	FALSE	344	826	44	306	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND1--MT-RNR2	3	2	MT-ND1	1246	chrM:3552:+	MT-RNR2	5019	chrM:1733:+	INCL_NON_REF_SPLICE	YES	13	0	0.28	1	0.0367	0.0245	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1143_BREAST	0.28	1	0.0612	FALSE	114	26	4	85	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND1--MT-RNR2	3	2	MT-ND1	1272	chrM:3578:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	YES	14	0	0.26	1	0.0367	0.0245	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1143_BREAST	0.26	1	0.0612	FALSE	114	26	4	85	0	FALSE	ACH-000374
HCC1143_BREAST	TMBIM4--GRIP1	1	10	TMBIM4	8665	chr12:66539621:-	GRIP1	23966	chr12:66990707:-	ONLY_REF_SPLICE	YES	535	0	0.02	1	0.0122	0.1223	TMBIM4->chr12:66517697-66563765:-,chr12:66517709-66563852:-,transmembrane_BAX_inhibitor_motif_containing_4,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1143_BREAST	0.02	1	0.1345	TRUE	0	0	0	1	0	FALSE	ACH-000374
HCC1143_BREAST	MT-TA--MT-TC	3	1	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0367	0.0122	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1143_BREAST	1	1	0.0489	FALSE	462	80	0	856	0	FALSE	ACH-000374
HCC1143_BREAST	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0367	0.0122	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1143_BREAST	0.8	1	0.0489	FALSE	515	4851	409	746	0	FALSE	ACH-000374
HCC1143_BREAST	ZNRD1-AS1--PPP2R5A	2	5	ZNRD1-AS1	4526	chr6:30025892:-	PPP2R5A	33789	chr1:212480125:+	ONLY_REF_SPLICE	YES	17	136	0.29	0.05	0.0245	0.0612	ZNRD1-AS1->chr6:29968788-30029417:-,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	HCC1143_BREAST	0.05	0.29	0.0857	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	LARS--CEP120	3	0	LARS	15438	chr5:145529185:-	CEP120	55719	chr5:122708466:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase,CEP120->centrosomal_protein_120,chr5:122680579-122759286:-	HCC1143_BREAST	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	MT-ND1--MT-RNR2	3	0	MT-ND1	1018	chrM:3324:+	MT-RNR2	6435	chrM:3149:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1143_BREAST	1	1	0.0367	FALSE	92	22	4	61	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1143_BREAST	1	1	0.0367	FALSE	344	821	44	306	0	FALSE	ACH-000374
HCC1143_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1143_BREAST	1	1	0.0367	FALSE	499	1288	110	792	0	FALSE	ACH-000374
HCC1143_BREAST	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1143_BREAST	1	1	0.0367	FALSE	25	145	6	90	0	FALSE	ACH-000374
HCC1143_BREAST	PRDM15--EPHB1	3	0	PRDM15	1209	chr21:43299383:-	EPHB1	72178	chr3:134967158:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	PRDM15->PR_domain_15,chr21:43218385-43299591:-,EPHB1->ArcherDX_panel,EPH_receptor_B1,FoundationOne_panel,chr3:134316643-134979309:+	HCC1143_BREAST	1	1	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	PRR16--CTD-2334D19.1	1	8	PRR16	6887	chr5:119954260:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	NO	60	0	0.13	1	0.0122	0.0979	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HCC1143_BREAST	0.13	1	0.1101	FALSE	0	2	0	14	0	FALSE	ACH-000374
HCC1143_BREAST	RP11-155G15.2--RP11-1E3.1	3	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HCC1143_BREAST	1	1	0.0367	FALSE	46	201	11	112	0	FALSE	ACH-000374
HCC1143_BREAST	USP25--CHODL-AS1	2	4	USP25	27145	chr21:17242466:+	CHODL-AS1	37480	chr21:19212970:-	ONLY_REF_SPLICE	YES	76	0	0.07	1	0.0245	0.0489	USP25->chr21:17102344-17252377:+,ubiquitin_specific_peptidase_25,CHODL-AS1->CHODL_antisense_RNA_1,chr21:19207333-19257925:-	HCC1143_BREAST	0.07	1	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	RP11-120D5.1--MID1	2	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0245	0.0245	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC1143_BREAST	0.5	1	0.049	FALSE	0	48	1	163	0	FALSE	ACH-000374
HCC1143_BREAST	TIMM23B--LINC00843	2	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0245	0.0245	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1143_BREAST	0.8	1	0.049	TRUE	62	24	1	171	0	FALSE	ACH-000374
HCC1143_BREAST	ZNRD1-AS1--PPP2R5A	1	6	ZNRD1-AS1	9108	chr6:30003693:-	PPP2R5A	33789	chr1:212480125:+	ONLY_REF_SPLICE	YES	13	136	0.35	0.05	0.0122	0.0734	ZNRD1-AS1->chr6:29968788-30029417:-,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	HCC1143_BREAST	0.05	0.35	0.0856	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	BCAR3--DNTTIP2	2	1	BCAR3	11906	chr1:94107860:-	DNTTIP2	35634	chr1:94337792:-	ONLY_REF_SPLICE	YES	85	200	0.03	0.01	0.0245	0.0122	LOCAL_REARRANGEMENT:-:[20667],BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,DNTTIP2->chr1:94333373-94345474:-,deoxynucleotidyltransferase_terminal_interacting_protein_2	HCC1143_BREAST	0.01	0.03	0.0367	FALSE	0	0	0	1	0	FALSE	ACH-000374
HCC1143_BREAST	SEMA3C--XRRA1	2	1	SEMA3C	4287	chr7:80545995:-	XRRA1	51604	chr11:74563127:-	ONLY_REF_SPLICE	YES	243	26	0.01	0.1	0.0245	0.0122	SEMA3C->chr7:80371854-80551675:-,semaphorin_3C,XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-	HCC1143_BREAST	0.01	0.1	0.0367	FALSE	0	0	0	1	0	FALSE	ACH-000374
HCC1143_BREAST	ZNRD1-AS1--PPP2R5A	1	5	ZNRD1-AS1	10116	chr6:30002685:-	PPP2R5A	38323	chr1:212506839:+	ONLY_REF_SPLICE	NO	3	154	0.67	0.04	0.0122	0.0612	ZNRD1-AS1->chr6:29968788-30029417:-,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	HCC1143_BREAST	0.04	0.67	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	C16orf52--FKBP10	2	0	C16orf52	4277	chr16:22087020:+	FKBP10	20979	chr17:39977199:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	C16orf52->chr16:22018959-22098855:+,chromosome_16_open_reading_frame_52,FKBP10->FK506_binding_protein_10,chr17:39968932-39979465:+	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	C17orf76-AS1--SKI	2	0	C17orf76-AS1	1593	chr17:16342728:+	SKI	17511	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	C17orf76-AS1->chr17:16342136-16381992:+,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	2	0	TRUE	ACH-000374
HCC1143_BREAST	CPSF6--HP1BP3	2	0	CPSF6	11046	chr12:69656342:+	HP1BP3	26902	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	DOCK7--ROR1	2	0	DOCK7	33386	chr1:62993822:-	ROR1	59819	chr1:64474977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	DOCK7->chr1:62920399-63153969:-,dedicator_of_cytokinesis_7,ROR1->chr1:64239693-64647181:+,receptor_tyrosine_kinase-like_orphan_receptor_1	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	EFNA5--FBXL17	2	0	EFNA5	1407	chr5:107006190:-	FBXL17	22958	chr5:107356702:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Brain_-_Frontal_Cortex_(BA9)=1,Nerve_-_Tibial=1},{Klijn_CCL:Head-Neck=1,Lung=1},EFNA5->chr5:106712590-107006596:-,ephrin_A5,FBXL17->F-box_and_leucine-rich_repeat_protein_17,chr5:107194736-107717799:-	HCC1143_BREAST	1	1	0.0245	TRUE	2	2	0	3	0	FALSE	ACH-000374
HCC1143_BREAST	ERAP1--COA5	2	0	ERAP1	20099	chr5:96112108:-	COA5	31331	chr2:99220654:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	ERAP1->chr5:96096521-96143803:-,endoplasmic_reticulum_aminopeptidase_1,COA5->chr2:99215773-99224978:-,cytochrome_c_oxidase_assembly_factor_5	HCC1143_BREAST	1	1	0.0245	TRUE	0	1	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	IP6K1--EEF1D	2	0	IP6K1	1189	chr3:49823787:-	EEF1D	25797	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	IP6K1->chr3:49761727-49823975:-,inositol_hexakisphosphate_kinase_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	MPI--ITGB3BP	2	0	MPI	1197	chr15:75182542:+	ITGB3BP	24051	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	MPI->chr15:75182346-75191798:+,mannose_phosphate_isomerase,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	PACSIN3--CTSV	2	0	PACSIN3	1095	chr11:47207900:-	CTSV	16158	chr9:99797975:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	PACSIN3->chr11:47199076-47207994:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_3,CTSV->cathepsin_V,chr9:99794940-99801925:-	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	PARP4--MFAP3	2	0	PARP4	1105	chr13:25086844:-	MFAP3	40742	chr5:153429117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	PARP4->chr13:24995064-25086948:-,poly(ADP-ribose)_polymerase_family_member_4,MFAP3->chr5:153418466-153600038:+,microfibrillar_associated_protein_3	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	PLXNB2--PPP6R2	2	0	PLXNB2	1075	chr22:50745982:-	PPP6R2	38191	chr22:50873395:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[35677],PLXNB2->chr22:50713408-50746056:-,plexin_B2,PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2	HCC1143_BREAST	1	1	0.0245	TRUE	1	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	RP11-120D5.1--MID1	1	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0122	0.0489	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC1143_BREAST	0.71	1	0.0611	FALSE	16	356	14	466	0	FALSE	ACH-000374
HCC1143_BREAST	RP11-166P13.3--CTTN	2	0	RP11-166P13.3	1185	chr17:55162201:-	CTTN	7510	chr11:70251371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	RP11-166P13.3->chr17:55155659-55162385:-,CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	SBF2--STT3B	2	0	SBF2	19870	chr11:9983504:-	STT3B	77500	chr3:31667446:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	SBF2->SET_binding_factor_2,chr11:9800214-10315754:-,STT3B->STT3B,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr3:31574130-31679112:+	HCC1143_BREAST	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	TRAM1--LACTB2	2	0	TRAM1	8875	chr8:71499130:-	LACTB2	19546	chr8:71556478:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:-:[26931],TRAM1->chr8:71485677-71520622:-,translocation_associated_membrane_protein_1,LACTB2->chr8:71547553-71581409:-,lactamase_beta_2	HCC1143_BREAST	1	1	0.0245	TRUE	0	1	0	2	0	TRUE	ACH-000374
HCC1143_BREAST	ZNRD1-AS1--PPP2R5A	1	4	ZNRD1-AS1	4526	chr6:30025892:-	PPP2R5A	34907	chr1:212487109:+	ONLY_REF_SPLICE	YES	17	141	0.23	0.03	0.0122	0.0489	ZNRD1-AS1->chr6:29968788-30029417:-,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	HCC1143_BREAST	0.03	0.23	0.0611	TRUE	0	0	0	1	0	FALSE	ACH-000374
HCC1143_BREAST	COL4A2--RP11-143A22.1	1	3	COL4A2	5250	chr13:111009899:+	RP11-143A22.1	50727	chr6:58488888:+	ONLY_REF_SPLICE	YES	102	0	0.04	1	0.0122	0.0367	COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2,RP11-143A22.1->chr6:58488888-58513860:+	HCC1143_BREAST	0.04	1	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	LINC00511--RMDN2	1	3	LINC00511	8867	chr17:70588342:-	RMDN2	39704	chr2:38201183:+	ONLY_REF_SPLICE	YES	262	37	0.02	0.1	0.0122	0.0367	LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,RMDN2->chr2:38150330-38294285:+,regulator_of_microtubule_dynamics_2	HCC1143_BREAST	0.02	0.1	0.0489	TRUE	0	0	0	1	0	FALSE	ACH-000374
HCC1143_BREAST	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	1	0	0.8	1	0.0122	0.0367	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1143_BREAST	0.8	1	0.0489	FALSE	275	511	55	178	0	FALSE	ACH-000374
HCC1143_BREAST	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	15	1	0.17	0.0122	0.0245	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1143_BREAST	0.17	1	0.0367	TRUE	458	1351	185	561	0	FALSE	ACH-000374
HCC1143_BREAST	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	NO	0	17	1	0.15	0.0122	0.0245	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1143_BREAST	0.15	1	0.0367	TRUE	465	1949	224	605	0	FALSE	ACH-000374
HCC1143_BREAST	ZNRD1-AS1--PPP2R5A	1	2	ZNRD1-AS1	4526	chr6:30025892:-	PPP2R5A	38323	chr1:212506839:+	ONLY_REF_SPLICE	YES	17	154	0.15	0.02	0.0122	0.0245	ZNRD1-AS1->chr6:29968788-30029417:-,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	HCC1143_BREAST	0.02	0.15	0.0367	TRUE	0	0	0	1	0	FALSE	ACH-000374
HCC1143_BREAST	ADORA2B--PIGL	1	1	ADORA2B	1667	chr17:15848897:+	PIGL	12895	chr17:16203202:+	ONLY_REF_SPLICE	YES	298	75	0.01	0.03	0.0122	0.0122	ADORA2B->adenosine_A2b_receptor,chr17:15848231-15879060:+,PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L	HCC1143_BREAST	0.01	0.03	0.0244	FALSE	0	1	0	2	1	FALSE	ACH-000374
HCC1143_BREAST	ASB16-AS1--MXI1	1	1	ASB16-AS1	3436	chr17:42258991:-	MXI1	14505	chr10:111987947:+	ONLY_REF_SPLICE	YES	35	19	0.05	0.1	0.0122	0.0122	ASB16-AS1->ASB16_antisense_RNA_1,chr17:42253341-42264085:-,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	HCC1143_BREAST	0.05	0.1	0.0244	TRUE	0	0	0	1	0	FALSE	ACH-000374
HCC1143_BREAST	BNIP2--ANXA2	1	1	BNIP2	1400	chr15:59981334:-	ANXA2	37731	chr15:60656722:-	ONLY_REF_SPLICE	NO	112	5394	0.02	0	0.0122	0.0122	BNIP2->BCL2/adenovirus_E1B_19kDa_interacting_protein_2,chr15:59951345-59981733:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	HCC1143_BREAST	0	0.02	0.0244	FALSE	0	2	0	6	0	FALSE	ACH-000374
HCC1143_BREAST	CNOT2--CAND1	1	1	CNOT2	11745	chr12:70704797:+	CAND1	37765	chr12:67675690:+	ONLY_REF_SPLICE	YES	266	329	0.01	0.01	0.0122	0.0122	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1	HCC1143_BREAST	0.01	0.01	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000374
HCC1143_BREAST	CPNE7--SPG7	1	1	CPNE7	14597	chr16:89662011:+	SPG7	29289	chr16:89590414:+	ONLY_REF_SPLICE	NO	218	101	0.01	0.02	0.0122	0.0122	LOCAL_REARRANGEMENT:+:[18000],CPNE7->chr16:89642176-89663654:+,copine_7,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	HCC1143_BREAST	0.01	0.02	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000374
HCC1143_BREAST	CPSF6--WDR11	1	1	CPSF6	11046	chr12:69656342:+	WDR11	37237	chr10:122643292:+	ONLY_REF_SPLICE	NO	177	69	0.01	0.03	0.0122	0.0122	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,WDR11->Oncogene{Bushman},WD_repeat_domain_11,chr10:122610687-122669036:+	HCC1143_BREAST	0.01	0.03	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000374
HCC1143_BREAST	DANCR--BRD4	1	1	DANCR	1530	chr4:53579126:+	BRD4	11375	chr19:15383944:-	ONLY_REF_SPLICE	YES	210	19	0.01	0.1	0.0122	0.0122	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,BRD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},bromodomain_containing_4,chr19:15347647-15443356:-	HCC1143_BREAST	0.01	0.1	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000374
HCC1143_BREAST	ERBB2IP--NLN	1	1	ERBB2IP	1332	chr5:65222634:+	NLN	39778	chr5:65036722:+	ONLY_REF_SPLICE	YES	218	18	0.01	0.1	0.0122	0.0122	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_REARRANGEMENT:+:[54750],ERBB2IP->chr5:65222303-65378377:+,NLN->chr5:65018023-65167553:+,neurolysin	HCC1143_BREAST	0.01	0.1	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000374
HCC1143_BREAST	GRHL2--YWHAZ	1	1	GRHL2	1358	chr8:102505017:+	YWHAZ	28545	chr8:101961128:-	ONLY_REF_SPLICE	YES	116	635	0.02	0	0.0122	0.0122	GRHL2->chr8:102504660-102681954:+,grainyhead_like_transcription_factor_2,YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta	HCC1143_BREAST	0	0.02	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000374
HCC1143_BREAST	LINC01036--LINC01037	1	1	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0122	0.0122	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HCC1143_BREAST	1	1	0.0244	FALSE	0	26	0	50	0	FALSE	ACH-000374
HCC1143_BREAST	LINC01036--LINC01037	1	1	LINC01036	2179	chr1:187272671:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0122	0.0122	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HCC1143_BREAST	1	1	0.0244	FALSE	0	1	0	5	0	FALSE	ACH-000374
HCC1143_BREAST	PPP4R1--NDUFV2	1	1	PPP4R1	11527	chr18:9583115:-	NDUFV2	33465	chr18:9117836:+	ONLY_REF_SPLICE	YES	522	196	0	0.01	0.0122	0.0122	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+	HCC1143_BREAST	0	0.01	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000374
HCC1143_BREAST	RHOA--DAG1	1	1	RHOA	2179	chr3:49449253:-	DAG1	21789	chr3:49547852:+	ONLY_REF_SPLICE	YES	1043	311	0	0.01	0.0122	0.0122	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[55715],RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,DAG1->chr3:49506146-49573048:+,dystroglycan_1	HCC1143_BREAST	0	0.01	0.0244	FALSE	0	0	0	8	0	FALSE	ACH-000374
HCC1143_BREAST	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0122	0.0122	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC1143_BREAST	0.67	1	0.0244	FALSE	81	155	12	160	0	FALSE	ACH-000374
HCC1143_BREAST	VAV2--RXRA	1	1	VAV2	1530	chr9:136857197:-	RXRA	45623	chr9:137293478:+	ONLY_REF_SPLICE	YES	45	1	0.04	0.67	0.0122	0.0122	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,RXRA->chr9:137208944-137332431:+,retinoid_X_receptor_alpha	HCC1143_BREAST	0.04	0.67	0.0244	TRUE	0	1	0	1	0	TRUE	ACH-000374
HCC1143_BREAST	ZNF420--UBA2	1	1	ZNF420	5639	chr19:37582023:+	UBA2	28690	chr19:34949674:+	ONLY_REF_SPLICE	YES	12	275	0.14	0.01	0.0122	0.0122	ZNF420->chr19:37498759-37621216:+,zinc_finger_protein_420,UBA2->chr19:34919257-34960853:+,ubiquitin_like_modifier_activating_enzyme_2	HCC1143_BREAST	0.01	0.14	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000374
SNU398_LIVER	RNF40--RP11-146F11.1	704	272	RNF40	6132	chr16:30778197:+	RP11-146F11.1	17835	chr16:30709252:-	ONLY_REF_SPLICE	YES	427	7	0.7	0.99	5.7524	2.2225	LOCAL_INVERSION:+:-:[62687],RNF40->chr16:30773066-30787628:+,ring_finger_protein_40,RP11-146F11.1->chr16:30709030-30710379:-	SNU398_LIVER	0.7	0.99	7.9749	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	TIMM23B--LINC00843	284	76	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	7	1	0.98	2.3206	0.621	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU398_LIVER	0.98	1	2.9416	TRUE	508	994	45	981	0	FALSE	ACH-000221
SNU398_LIVER	ZNF121--SIN3B	253	0	ZNF121	1073	chr19:9695137:-	SIN3B	26788	chr19:16980271:+	ONLY_REF_SPLICE	YES	0	0	1	1	2.0673	0	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,SIN3B->SIN3_transcription_regulator_family_member_B,chr19:16940211-16991164:+	SNU398_LIVER	1	1	2.0673	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	TIMM23--RP11-464F9.1	178	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	569	11	0.24	0.94	1.4544	0.0327	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU398_LIVER	0.24	0.94	1.4871	TRUE	519	3926	326	965	0	FALSE	ACH-000221
SNU398_LIVER	RNF40--RP11-146F11.1	76	298	RNF40	7048	chr16:30779113:+	RP11-146F11.1	17360	chr16:30709727:-	INCL_NON_REF_SPLICE	YES	477	4	0.44	0.99	0.621	2.435	LOCAL_INVERSION:+:-:[62687],RNF40->chr16:30773066-30787628:+,ring_finger_protein_40,RP11-146F11.1->chr16:30709030-30710379:-	SNU398_LIVER	0.44	0.99	3.056	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	RNF40--RP11-146F11.1	114	140	RNF40	6065	chr16:30778130:+	RP11-146F11.1	17835	chr16:30709252:-	INCL_NON_REF_SPLICE	YES	263	7	0.49	0.97	0.9315	1.1439	LOCAL_INVERSION:+:-:[62687],RNF40->chr16:30773066-30787628:+,ring_finger_protein_40,RP11-146F11.1->chr16:30709030-30710379:-	SNU398_LIVER	0.49	0.97	2.0754	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	PARD3--PLEKHA2	111	28	PARD3	2552	chr10:34985246:-	PLEKHA2	49215	chr8:38826110:+	ONLY_REF_SPLICE	YES	49	1	0.74	0.99	0.907	0.2288	{Klijn_CCL:Liver=1},PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,PLEKHA2->Oncogene{Bushman},chr8:38758753-38831428:+,pleckstrin_homology_domain_containing_A2	SNU398_LIVER	0.74	0.99	1.1358	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	AP003900.6--AC011718.2	97	42	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	23	0	0.86	1	0.7926	0.3432	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU398_LIVER	0.86	1	1.1358	TRUE	0	5	0	45	5	FALSE	ACH-000221
SNU398_LIVER	ZNF680--SNAP91	77	40	ZNF680	4236	chr7:64004085:-	SNAP91	31549	chr6:84320396:-	ONLY_REF_SPLICE	YES	29	4	0.8	0.97	0.6292	0.3268	{Klijn_CCL:Liver=1},ZNF680->chr7:63980262-64023484:-,zinc_finger_protein_680,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	SNU398_LIVER	0.8	0.97	0.956	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	RNF40--RP11-146F11.1	7	275	RNF40	6132	chr16:30778197:+	RP11-146F11.1	17451	chr16:30709636:-	INCL_NON_REF_SPLICE	YES	427	16	0.4	0.95	0.0572	2.247	LOCAL_INVERSION:+:-:[62687],RNF40->chr16:30773066-30787628:+,ring_finger_protein_40,RP11-146F11.1->chr16:30709030-30710379:-	SNU398_LIVER	0.4	0.95	2.3042	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	RP11-867G2.6--PABPC1	72	0	RP11-867G2.6	3092	chr11:94381554:+	PABPC1	10856	chr8:101730508:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5883	0	RP11-867G2.6->chr11:94375073-94384797:+,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	SNU398_LIVER	1	1	0.5883	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	KMT2B--DMKN	60	32	KMT2B	16726	chr19:36224773:+	DMKN	24862	chr19:36004084:-	INCL_NON_REF_SPLICE	YES	58	8	0.61	0.92	0.4903	0.2615	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},KMT2B->chr19:36208921-36229779:+,lysine_methyltransferase_2B,DMKN->chr19:35988122-36004560:-,dermokine	SNU398_LIVER	0.61	0.92	0.7518	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	PCDH15--RP11-168O22.1	62	14	PCDH15	1318	chr10:57387385:-	RP11-168O22.1	68273	chr10:57335471:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.5066	0.1144	GTEx_FI:{Adrenal_Gland=[count:35=pct:41.2],Pituitary=[count:2=pct:3.8],Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3]},PCDH15->chr10:55562531-57387702:-,protocadherin-related_15,RP11-168O22.1->chr10:57007515-57356993:-	SNU398_LIVER	0.99	1	0.621	TRUE	32	58	0	7	0	FALSE	ACH-000221
SNU398_LIVER	RP11-123O10.4--GRIP1	57	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4657	0.0654	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU398_LIVER	1	1	0.5311	FALSE	416	2512	207	587	0	FALSE	ACH-000221
SNU398_LIVER	FAM32A--AC006548.19	55	7	FAM32A	1386	chr19:16296576:+	AC006548.19	8922	chr22:17378335:+	ONLY_REF_SPLICE	YES	402	0	0.13	1	0.4494	0.0572	FAM32A->chr19:16296191-16302857:+,family_with_sequence_similarity_32_member_A,AC006548.19->chr22:17378335-17378436:+	SNU398_LIVER	0.13	1	0.5066	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	ZNF680--SNAP91	33	47	ZNF680	4236	chr7:64004085:-	SNAP91	28706	chr6:84326758:-	ONLY_REF_SPLICE	YES	29	3	0.73	0.96	0.2696	0.384	{Klijn_CCL:Liver=1},ZNF680->chr7:63980262-64023484:-,zinc_finger_protein_680,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	SNU398_LIVER	0.73	0.96	0.6536	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	MT-TA--MT-TC	40	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3268	0.0735	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU398_LIVER	1	1	0.4003	FALSE	462	80	0	856	0	FALSE	ACH-000221
SNU398_LIVER	LINC00662--CIB3	39	12	LINC00662	1941	chr19:28283908:-	CIB3	27068	chr19:16275724:-	ONLY_REF_SPLICE	YES	74	10	0.41	0.84	0.3187	0.0981	LINC00662->chr19:28175488-28284848:-,long_intergenic_non-protein_coding_RNA_662,CIB3->calcium_and_integrin_binding_family_member_3,chr19:16272179-16284336:-	SNU398_LIVER	0.41	0.84	0.4168	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	ZNF680--SNAP91	33	29	ZNF680	1182	chr7:64023303:-	SNAP91	31549	chr6:84320396:-	ONLY_REF_SPLICE	YES	54	4	0.53	0.94	0.2696	0.237	{Klijn_CCL:Liver=1},ZNF680->chr7:63980262-64023484:-,zinc_finger_protein_680,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	SNU398_LIVER	0.53	0.94	0.5066	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	KDM4C--PARD6G	31	10	KDM4C	27495	chr9:7015929:+	PARD6G	45210	chr18:77960815:-	ONLY_REF_SPLICE	YES	16	0	0.72	1	0.2533	0.0817	{Klijn_CCL:Liver=1},KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,PARD6G->chr18:77915115-78005429:-,par-6_family_cell_polarity_regulator_gamma	SNU398_LIVER	0.72	1	0.335	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	C15orf57--CBX3	30	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	41	30	0.51	0.58	0.2451	0.0981	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU398_LIVER	0.51	0.58	0.3432	TRUE	267	562	48	632	0	FALSE	ACH-000221
SNU398_LIVER	ZNF121--SIN3B	25	31	ZNF121	1348	chr19:9694862:-	SIN3B	26788	chr19:16980271:+	ONLY_REF_SPLICE	YES	7	44	0.89	0.56	0.2043	0.2533	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,SIN3B->SIN3_transcription_regulator_family_member_B,chr19:16940211-16991164:+	SNU398_LIVER	0.56	0.89	0.4576	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	PIP5K1C--NFIC	30	10	PIP5K1C	18119	chr19:3638882:-	NFIC	29982	chr19:3381710:+	ONLY_REF_SPLICE	YES	7	9	0.85	0.82	0.2451	0.0817	{Klijn_CCL:Liver=1},PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma,NFIC->Oncogene{Bushman},chr19:3359561-3469215:+,nuclear_factor_I_C	SNU398_LIVER	0.82	0.85	0.3268	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	ZNF654--HMGB2	32	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2615	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU398_LIVER	1	1	0.2615	TRUE	0	0	0	518	0	FALSE	ACH-000221
SNU398_LIVER	RP11-6N13.1--CTD-2374C24.1	28	8	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2288	0.0654	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SNU398_LIVER	1	1	0.2942	TRUE	5	4	0	46	0	FALSE	ACH-000221
SNU398_LIVER	MSANTD2--AHCY	22	22	MSANTD2	8060	chr11:124636579:-	AHCY	12578	chr20:32891162:-	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.1798	0.1798	MSANTD2->Myb/SANT_DNA_binding_domain_containing_2,chr11:124636394-124670569:-,AHCY->adenosylhomocysteinase,chr20:32868074-32899608:-	SNU398_LIVER	0.92	1	0.3596	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	MT-ND6--MT-TE	25	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2043	0.0163	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU398_LIVER	1	1	0.2206	FALSE	499	1288	110	792	0	FALSE	ACH-000221
SNU398_LIVER	AP003900.6--RP11-435B5.4	21	0	AP003900.6	1122	chr21:11169841:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1716	0	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	SNU398_LIVER	1	1	0.1716	TRUE	1	3	0	6	3	TRUE	ACH-000221
SNU398_LIVER	C17orf76-AS1--PTCD3	20	1	C17orf76-AS1	3754	chr17:16344889:+	PTCD3	29917	chr2:86359744:+	INCL_NON_REF_SPLICE	NO	846	351	0.02	0.06	0.1634	0.0082	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	SNU398_LIVER	0.02	0.06	0.1716	TRUE	0	0	0	4	0	FALSE	ACH-000221
SNU398_LIVER	ZNF680--SNAP91	9	34	ZNF680	1182	chr7:64023303:-	SNAP91	28706	chr6:84326758:-	ONLY_REF_SPLICE	YES	54	3	0.44	0.93	0.0735	0.2778	{Klijn_CCL:Liver=1},ZNF680->chr7:63980262-64023484:-,zinc_finger_protein_680,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	SNU398_LIVER	0.44	0.93	0.3513	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	MT-ND6--MT-TE	14	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1144	0.0899	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU398_LIVER	1	1	0.2043	FALSE	499	1288	110	792	0	FALSE	ACH-000221
SNU398_LIVER	LINC01036--LINC01037	15	6	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1226	0.049	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SNU398_LIVER	1	1	0.1716	FALSE	0	24	0	62	0	FALSE	ACH-000221
SNU398_LIVER	PCDH15--RP11-168O22.1	14	9	PCDH15	1318	chr10:57387385:-	RP11-168O22.1	69335	chr10:57125973:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.1144	0.0735	GTEx_FI:{Adrenal_Gland=[count:35=pct:41.2],Pituitary=[count:2=pct:3.8],Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3]},PCDH15->chr10:55562531-57387702:-,protocadherin-related_15,RP11-168O22.1->chr10:57007515-57356993:-	SNU398_LIVER	0.96	1	0.1879	TRUE	13	14	0	3	0	FALSE	ACH-000221
SNU398_LIVER	RP1-34H18.1--NAV3	14	5	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	139	1	0.12	0.1144	0.0409	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SNU398_LIVER	0.12	1	0.1553	TRUE	254	575	65	124	0	FALSE	ACH-000221
SNU398_LIVER	RP1-34H18.1--RP11-781A6.1	14	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1144	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	SNU398_LIVER	1	1	0.1144	TRUE	94	160	11	37	0	FALSE	ACH-000221
SNU398_LIVER	HSP90AB1--MT-RNR2	13	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3887	0	0	1	0.1062	0.0082	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU398_LIVER	0	1	0.1144	FALSE	13	9	0	364	0	FALSE	ACH-000221
SNU398_LIVER	LINC00662--CIB3	8	21	LINC00662	1941	chr19:28283908:-	CIB3	24827	chr19:16280533:-	ONLY_REF_SPLICE	YES	74	0	0.28	1	0.0654	0.1716	LINC00662->chr19:28175488-28284848:-,long_intergenic_non-protein_coding_RNA_662,CIB3->calcium_and_integrin_binding_family_member_3,chr19:16272179-16284336:-	SNU398_LIVER	0.28	1	0.237	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	LINC00662--CIB3	8	21	LINC00662	1941	chr19:28283908:-	CIB3	24808	chr19:16280552:-	ONLY_REF_SPLICE	YES	74	0	0.28	1	0.0654	0.1716	LINC00662->chr19:28175488-28284848:-,long_intergenic_non-protein_coding_RNA_662,CIB3->calcium_and_integrin_binding_family_member_3,chr19:16272179-16284336:-	SNU398_LIVER	0.28	1	0.237	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	PARD3--PLEKHA2	10	13	PARD3	1450	chr10:35103804:-	PLEKHA2	49215	chr8:38826110:+	ONLY_REF_SPLICE	YES	28	1	0.45	0.96	0.0817	0.1062	{Klijn_CCL:Liver=1},PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,PLEKHA2->Oncogene{Bushman},chr8:38758753-38831428:+,pleckstrin_homology_domain_containing_A2	SNU398_LIVER	0.45	0.96	0.1879	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	HSPBP1--GRK5	12	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0981	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU398_LIVER	1	1	0.0981	TRUE	1	39	0	134	39	FALSE	ACH-000221
SNU398_LIVER	RP11-680G10.1--GSE1	11	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	42	1	0.25	0.0899	0.0245	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU398_LIVER	0.25	1	0.1144	TRUE	458	1351	185	561	0	FALSE	ACH-000221
SNU398_LIVER	LINC00662--CIB3	7	17	LINC00662	1941	chr19:28283908:-	CIB3	25920	chr19:16279095:-	ONLY_REF_SPLICE	YES	74	8	0.24	0.75	0.0572	0.1389	LINC00662->chr19:28175488-28284848:-,long_intergenic_non-protein_coding_RNA_662,CIB3->calcium_and_integrin_binding_family_member_3,chr19:16272179-16284336:-	SNU398_LIVER	0.24	0.75	0.1961	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	LINC00662--CIB3	5	21	LINC00662	1941	chr19:28283908:-	CIB3	23773	chr19:16284007:-	ONLY_REF_SPLICE	YES	74	0	0.26	1	0.0409	0.1716	LINC00662->chr19:28175488-28284848:-,long_intergenic_non-protein_coding_RNA_662,CIB3->calcium_and_integrin_binding_family_member_3,chr19:16272179-16284336:-	SNU398_LIVER	0.26	1	0.2125	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	SAE1--SHC2	10	1	SAE1	3734	chr19:47634285:+	SHC2	22279	chr19:440932:-	ONLY_REF_SPLICE	YES	682	0	0.02	1	0.0817	0.0082	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,SHC2->SHC_(Src_homology_2_domain_containing)_transforming_protein_2,chr19:416583-460996:-	SNU398_LIVER	0.02	1	0.0899	TRUE	0	0	0	1	0	FALSE	ACH-000221
SNU398_LIVER	ZNF680--SNAP91	4	24	ZNF680	4236	chr7:64004085:-	SNAP91	33687	chr6:84315522:-	ONLY_REF_SPLICE	YES	29	17	0.49	0.62	0.0327	0.1961	{Klijn_CCL:Liver=1},ZNF680->chr7:63980262-64023484:-,zinc_finger_protein_680,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	SNU398_LIVER	0.49	0.62	0.2288	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	C15orf57--CBX3	8	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	41	32	0.27	0.32	0.0654	0.0572	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU398_LIVER	0.27	0.32	0.1226	TRUE	267	562	48	632	0	FALSE	ACH-000221
SNU398_LIVER	MT-ND6--MT-TE	9	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0735	0.0245	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU398_LIVER	1	1	0.098	FALSE	499	1288	110	792	0	FALSE	ACH-000221
SNU398_LIVER	MT-ND6--MT-TE	8	7	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0654	0.0572	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU398_LIVER	1	1	0.1226	FALSE	499	1288	110	792	0	FALSE	ACH-000221
SNU398_LIVER	CALM3--MT-ND4L	9	1	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1171	0	0.01	1	0.0735	0.0082	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU398_LIVER	0.01	1	0.0817	FALSE	1	1	0	107	0	FALSE	ACH-000221
SNU398_LIVER	ZNF680--SNAP91	2	29	ZNF680	2510	chr7:64021324:-	SNAP91	31549	chr6:84320396:-	ONLY_REF_SPLICE	YES	45	4	0.41	0.89	0.0163	0.237	{Klijn_CCL:Liver=1},ZNF680->chr7:63980262-64023484:-,zinc_finger_protein_680,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	SNU398_LIVER	0.41	0.89	0.2533	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	MT-ND6--MT-TE	7	7	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0572	0.0572	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU398_LIVER	1	1	0.1144	FALSE	499	1288	110	792	0	FALSE	ACH-000221
SNU398_LIVER	HSP90AB1--MT-RNR2	8	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3853	0	0	1	0.0654	0.0082	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU398_LIVER	0	1	0.0736	FALSE	13	9	0	364	0	FALSE	ACH-000221
SNU398_LIVER	AP003900.6--AC011718.2	7	4	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	19	0	0.37	1	0.0572	0.0327	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU398_LIVER	0.37	1	0.0899	TRUE	0	3	0	38	3	FALSE	ACH-000221
SNU398_LIVER	AP003900.6--AC011718.2	3	18	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	23	2	0.48	0.91	0.0245	0.1471	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU398_LIVER	0.48	0.91	0.1716	TRUE	0	1	0	20	1	FALSE	ACH-000221
SNU398_LIVER	MT-ND6--MT-TE	5	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0.0654	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU398_LIVER	1	1	0.1063	FALSE	499	1288	110	792	0	FALSE	ACH-000221
SNU398_LIVER	RP11-680G10.1--GSE1	6	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	50	1	0.15	0.049	0.0245	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU398_LIVER	0.15	1	0.0735	TRUE	465	1949	224	605	0	FALSE	ACH-000221
SNU398_LIVER	LINC01036--LINC01037	6	2	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.049	0.0163	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SNU398_LIVER	1	1	0.0653	FALSE	0	26	0	50	0	FALSE	ACH-000221
SNU398_LIVER	MT-TA--MT-TC	4	9	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.0735	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU398_LIVER	1	1	0.1062	FALSE	462	80	0	856	0	FALSE	ACH-000221
SNU398_LIVER	SLC1A5--MT-ND4L	6	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU398_LIVER	1	1	0.049	FALSE	0	0	0	189	0	FALSE	ACH-000221
SNU398_LIVER	MT-TA--MT-TC	5	3	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0.0245	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU398_LIVER	1	1	0.0654	FALSE	462	80	0	856	0	FALSE	ACH-000221
SNU398_LIVER	RP11-6N13.1--CTD-2374C24.1	4	7	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0.0572	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SNU398_LIVER	1	1	0.0899	TRUE	5	12	0	42	0	FALSE	ACH-000221
SNU398_LIVER	ZNF680--SNAP91	1	19	ZNF680	1182	chr7:64023303:-	SNAP91	33687	chr6:84315522:-	ONLY_REF_SPLICE	YES	54	17	0.27	0.54	0.0082	0.1552	{Klijn_CCL:Liver=1},ZNF680->chr7:63980262-64023484:-,zinc_finger_protein_680,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	SNU398_LIVER	0.27	0.54	0.1634	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	MT-ND6--MT-TE	3	10	MT-ND6	1057	chrM:14617:-	MT-TE	4530	chrM:14738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0245	0.0817	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU398_LIVER	1	1	0.1062	FALSE	499	1288	110	792	0	FALSE	ACH-000221
SNU398_LIVER	MT-ND6--MT-TE	3	9	MT-ND6	1049	chrM:14625:-	MT-TE	4522	chrM:14746:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0245	0.0735	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU398_LIVER	1	1	0.098	FALSE	499	1288	110	792	0	FALSE	ACH-000221
SNU398_LIVER	ATP2A2--MT-ND4	5	0	ATP2A2	23112	chr12:110783875:+	MT-ND4	31964	chrM:11588:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0	ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SNU398_LIVER	1	1	0.0409	FALSE	0	0	0	1	0	FALSE	ACH-000221
SNU398_LIVER	EIF1--RPS28	5	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SNU398_LIVER	1	1	0.0409	TRUE	0	0	0	81	0	FALSE	ACH-000221
SNU398_LIVER	AP003900.6--AC011718.2	2	10	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	23	21	0.34	0.36	0.0163	0.0817	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU398_LIVER	0.34	0.36	0.098	TRUE	0	1	0	24	1	FALSE	ACH-000221
SNU398_LIVER	SAE1--SHC2	4	2	SAE1	3818	chr19:47634369:+	SHC2	22279	chr19:440932:-	ONLY_REF_SPLICE	YES	812	0	0.01	1	0.0327	0.0163	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,SHC2->SHC_(Src_homology_2_domain_containing)_transforming_protein_2,chr19:416583-460996:-	SNU398_LIVER	0.01	1	0.049	FALSE	0	0	0	1	0	FALSE	ACH-000221
SNU398_LIVER	AP003900.6--RP11-435B5.4	4	1	AP003900.6	3299	chr21:11174002:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	23	2	0.18	0.71	0.0327	0.0082	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	SNU398_LIVER	0.18	0.71	0.0409	TRUE	0	1	0	4	1	TRUE	ACH-000221
SNU398_LIVER	KMT2B--DMKN	1	13	KMT2B	16726	chr19:36224773:+	DMKN	25254	chr19:36003692:-	ONLY_REF_SPLICE	NO	58	16	0.19	0.47	0.0082	0.1062	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},KMT2B->chr19:36208921-36229779:+,lysine_methyltransferase_2B,DMKN->chr19:35988122-36004560:-,dermokine	SNU398_LIVER	0.19	0.47	0.1144	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	NAV3--CNTNAP4	4	1	NAV3	1800	chr12:78225484:+	CNTNAP4	57773	chr16:76350310:+	ONLY_REF_SPLICE	YES	155	162	0.03	0.03	0.0327	0.0082	NAV3->chr12:78224685-78606790:+,neuron_navigator_3,CNTNAP4->chr16:76311176-76593135:+,contactin_associated_protein_like_4	SNU398_LIVER	0.03	0.03	0.0409	TRUE	0	0	0	1	0	FALSE	ACH-000221
SNU398_LIVER	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU398_LIVER	1	1	0.0327	TRUE	0	0	0	434	0	FALSE	ACH-000221
SNU398_LIVER	MT-TA--MT-TC	3	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0245	0.0163	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU398_LIVER	1	1	0.0408	FALSE	462	80	0	856	0	FALSE	ACH-000221
SNU398_LIVER	RP11-6N13.1--CTD-2374C24.1	3	2	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.0245	0.0163	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SNU398_LIVER	0.71	1	0.0408	TRUE	1	1	0	17	1	FALSE	ACH-000221
SNU398_LIVER	C17orf76-AS1--PTCD3	3	1	C17orf76-AS1	1593	chr17:16342728:+	PTCD3	33495	chr2:86363644:+	ONLY_REF_SPLICE	YES	344	330	0.01	0.01	0.0245	0.0082	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	SNU398_LIVER	0.01	0.01	0.0327	FALSE	0	3	0	8	0	FALSE	ACH-000221
SNU398_LIVER	NAV3--RP11-781A6.1	3	1	NAV3	1800	chr12:78225484:+	RP11-781A6.1	56079	chr12:78177043:+	ONLY_REF_SPLICE	YES	155	0	0.03	1	0.0245	0.0082	LOCAL_REARRANGEMENT:+:[47329],NAV3->chr12:78224685-78606790:+,neuron_navigator_3,RP11-781A6.1->chr12:78169563-78177356:+	SNU398_LIVER	0.03	1	0.0327	TRUE	0	0	0	1	0	FALSE	ACH-000221
SNU398_LIVER	TIMM23B--LINC00843	3	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	3	1	0.57	0.0245	0.0082	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU398_LIVER	0.57	1	0.0327	TRUE	62	24	1	171	0	FALSE	ACH-000221
SNU398_LIVER	EIF1--RPS28	3	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SNU398_LIVER	1	1	0.0245	TRUE	0	0	0	81	0	FALSE	ACH-000221
SNU398_LIVER	EPS15L1--CTD-2562J15.4	3	0	EPS15L1	1176	chr19:16582721:-	CTD-2562J15.4	35051	chr19:16297326:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0245	0	EPS15L1->Oncogene{Bushman},chr19:16466050-16582896:-,epidermal_growth_factor_receptor_pathway_substrate_15-like_1,CTD-2562J15.4->chr19:16297087-16300269:-	SNU398_LIVER	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	RP11-123O10.4--GRIP1	1	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0082	0.0654	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU398_LIVER	1	1	0.0736	FALSE	9	21	5	22	0	FALSE	ACH-000221
SNU398_LIVER	RP11-123O10.4--GRIP1	2	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0.0327	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU398_LIVER	1	1	0.049	FALSE	93	270	15	244	0	FALSE	ACH-000221
SNU398_LIVER	RP11-168O22.1--PCDH15	3	0	RP11-168O22.1	3305	chr10:57125852:-	PCDH15	9774	chr10:56926411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	SNU398_LIVER	1	1	0.0245	TRUE	14	7	0	7	0	FALSE	ACH-000221
SNU398_LIVER	SLIT2--EEF1D	3	0	SLIT2	4960	chr4:20259562:+	EEF1D	60939	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	SLIT2->ArcherDX_panel,FoundationOne_panel,chr4:20254883-20622184:+,slit_guidance_ligand_2,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SNU398_LIVER	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	ROBO2--GNAS	2	1	ROBO2	6998	chr3:77147491:+	GNAS	67421	chr20:57470667:+	ONLY_REF_SPLICE	YES	247	766	0.01	0	0.0163	0.0082	ROBO2->chr3:75955846-77699115:+,roundabout_guidance_receptor_2,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNU398_LIVER	0	0.01	0.0245	FALSE	0	0	0	1	0	FALSE	ACH-000221
SNU398_LIVER	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0163	0.0082	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU398_LIVER	0.75	1	0.0245	FALSE	407	2205	196	549	0	FALSE	ACH-000221
SNU398_LIVER	CCDC171--PSMG3	2	0	CCDC171	8643	chr9:15623411:+	PSMG3	58356	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	CTDSP1--DNM3OS	2	0	CTDSP1	5150	chr2:219267128:+	DNM3OS	12044	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	GTEx_FI:{Blood_Vessel=[count:34=pct:9.2],Ovary=[count:11=pct:20.8],Colon=[count:9=pct:4.7],Esophagus=[count:5=pct:1.2],Adipose_Tissue=[count:4=pct:1.3],Breast=[count:4=pct:3.6],Thyroid=[count:4=pct:2.3],Spleen=[count:3=pct:2.7],Lung=[count:3=pct:1.8],Vagina=[count:2=pct:3.6],Uterus=[count:2=pct:4.7],Skin=[count:2=pct:0.6],Prostate=[count:2=pct:3.3],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Testis=[count:1=pct:1.0]},CTDSP1->CTD_small_phosphatase_1,chr2:219262979-219270664:+,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	SNU398_LIVER	1	1	0.0163	TRUE	71	70	15	9	0	FALSE	ACH-000221
SNU398_LIVER	GATS--PILRB	2	0	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	SNU398_LIVER	1	1	0.0163	TRUE	57	41	2	35	0	FALSE	ACH-000221
SNU398_LIVER	GNAT3--DNM3OS	2	0	GNAT3	1212	chr7:80141125:-	DNM3OS	11706	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	GNAT3->G_protein_subunit_alpha_transducin_3,chr7:80087987-80141336:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	HSPBAP1--ARL13B	2	0	HSPBAP1	1208	chr3:122512464:-	ARL13B	27401	chr3:93768250:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	HSPBAP1->HSPB1_associated_protein_1,Oncogene{Bushman},chr3:122458846-122512671:-,ARL13B->ADP_ribosylation_factor_like_GTPase_13B,chr3:93698983-93774512:+	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	RP11-168O22.1--PCDH15	2	0	RP11-168O22.1	2183	chr10:57335410:-	PCDH15	9774	chr10:56926411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	SNU398_LIVER	1	1	0.0163	TRUE	18	36	1	9	0	FALSE	ACH-000221
SNU398_LIVER	RP11-435B5.4--DCTD	2	0	RP11-435B5.4	2843	chr1:143465380:-	DCTD	21959	chr4:183836728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	RP11-435B5.4->chr1:143354963-143467632:-,DCTD->chr4:183811213-183839089:-,dCMP_deaminase	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	RP11-548L20.1--STK35	2	0	RP11-548L20.1	2265	chr4:34260709:-	STK35	13614	chr20:2124430:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	RP11-548L20.1->chr4:34122516-34271369:-,STK35->chr20:2082257-2157684:+,serine/threonine_kinase_35	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	TENM3--CMTM1	2	0	TENM3	10440	chr4:183550042:+	CMTM1	50027	chr16:66611007:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	TENM3->chr4:183065140-183724177:+,teneurin_transmembrane_protein_3,CMTM1->CKLF_like_MARVEL_transmembrane_domain_containing_1,chr16:66600294-66613040:+	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	UBE2D2--ETF1	2	0	UBE2D2	2832	chr5:138941400:+	ETF1	16749	chr5:137854556:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2,ETF1->chr5:137841784-137878989:-,eukaryotic_translation_termination_factor_1	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	ZNF121--SIN3B	2	0	ZNF121	1073	chr19:9695137:-	SIN3B	28404	chr19:16982040:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	ZNF121->chr19:9671029-9695209:-,zinc_finger_protein_121,SIN3B->SIN3_transcription_regulator_family_member_B,chr19:16940211-16991164:+	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	ZNF804A--FAM171B	2	0	ZNF804A	1705	chr2:185463797:+	FAM171B	16618	chr2:187615861:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	ZNF804A->chr2:185463093-185804219:+,zinc_finger_protein_804A,FAM171B->chr2:187558698-187630685:+,family_with_sequence_similarity_171_member_B	SNU398_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000221
SNU398_LIVER	CUX1--SEMA3A	1	1	CUX1	15927	chr7:101758553:+	SEMA3A	65902	chr7:83764267:-	ONLY_REF_SPLICE	YES	52	314	0.04	0.01	0.0082	0.0082	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,SEMA3A->chr7:83585093-84122040:-,semaphorin_3A	SNU398_LIVER	0.01	0.04	0.0164	FALSE	0	0	0	1	0	FALSE	ACH-000221
SNU398_LIVER	LINC00339--USP48	1	1	LINC00339	1456	chr1:22352136:+	USP48	33066	chr1:22030111:-	ONLY_REF_SPLICE	YES	25	117	0.07	0.02	0.0082	0.0082	LINC00339->chr1:22351681-22357716:+,long_intergenic_non-protein_coding_RNA_339,USP48->chr1:22004791-22110099:-,ubiquitin_specific_peptidase_48	SNU398_LIVER	0.02	0.07	0.0164	TRUE	0	0	0	1	0	FALSE	ACH-000221
SNU398_LIVER	PAPSS1--HADH	1	1	PAPSS1	13404	chr4:108565958:-	HADH	23530	chr4:108930915:+	ONLY_REF_SPLICE	NO	368	186	0.01	0.01	0.0082	0.0082	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellum=1},PAPSS1->3'-phosphoadenosine_5'-phosphosulfate_synthase_1,chr4:108511433-108641608:-,HADH->chr4:108910870-108956331:+,hydroxyacyl-CoA_dehydrogenase	SNU398_LIVER	0.01	0.01	0.0164	FALSE	0	0	0	1	0	FALSE	ACH-000221
SNU398_LIVER	RAB7A--OGT	1	1	RAB7A	6199	chr3:128526514:+	OGT	20196	chrX:70767757:+	ONLY_REF_SPLICE	NO	793	153	0	0.01	0.0082	0.0082	RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,OGT->O-linked_N-acetylglucosamine_(GlcNAc)_transferase,chrX:70752933-70795747:+	SNU398_LIVER	0	0.01	0.0164	FALSE	0	0	0	1	0	FALSE	ACH-000221
SNU398_LIVER	RP11-6N13.1--CTD-2374C24.1	1	1	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	20885	chr5:104311586:-	ONLY_REF_SPLICE	YES	0	5	1	0.29	0.0082	0.0082	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SNU398_LIVER	0.29	1	0.0164	TRUE	1	2	0	8	1	FALSE	ACH-000221
SNU398_LIVER	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0082	0.0082	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU398_LIVER	0.67	1	0.0164	FALSE	515	4851	409	746	0	FALSE	ACH-000221
SNU398_LIVER	SF1--FUS	1	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	408	1407	0	0	0.0082	0.0082	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	SNU398_LIVER	0	0	0.0164	FALSE	5	20	0	32	0	FALSE	ACH-000221
SNU398_LIVER	SNHG5--MRPS21	1	1	SNHG5	1780	chr6:86387672:-	MRPS21	10788	chr1:150280482:+	ONLY_REF_SPLICE	YES	299	389	0.01	0.01	0.0082	0.0082	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,MRPS21->chr1:150266289-150281414:+,mitochondrial_ribosomal_protein_S21	SNU398_LIVER	0.01	0.01	0.0164	FALSE	0	0	0	1	0	FALSE	ACH-000221
SNU398_LIVER	TIMM23--RP11-464F9.1	1	1	TIMM23	5841	chr10:51610393:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	698	11	0	0.15	0.0082	0.0082	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU398_LIVER	0	0.15	0.0164	FALSE	1	12	0	11	0	FALSE	ACH-000221
SNU398_LIVER	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	1891	110	0	0.02	0.0082	0.0082	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SNU398_LIVER	0	0.02	0.0164	FALSE	6	50	7	115	0	FALSE	ACH-000221
SNU886_LIVER	HSPBP1--ZSWIM6	199	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5071	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	SNU886_LIVER	1	1	1.5071	TRUE	47	32	1	28	0	FALSE	ACH-000316
SNU886_LIVER	TIMM23B--LINC00843	96	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.727	0.1969	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU886_LIVER	1	1	0.9239	TRUE	508	994	45	981	0	FALSE	ACH-000316
SNU886_LIVER	TIMM23--RP11-464F9.1	63	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	291	3	0.18	0.96	0.4771	0.0151	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU886_LIVER	0.18	0.96	0.4922	TRUE	519	3926	326	965	0	FALSE	ACH-000316
SNU886_LIVER	ZNF654--HMGB2	40	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3029	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU886_LIVER	1	1	0.3029	TRUE	0	0	0	518	0	FALSE	ACH-000316
SNU886_LIVER	MT-TA--MT-TC	39	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2954	0.0151	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU886_LIVER	1	1	0.3105	FALSE	462	80	0	856	0	FALSE	ACH-000316
SNU886_LIVER	MT-ND6--MT-TE	32	8	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2423	0.0606	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU886_LIVER	1	1	0.3029	FALSE	499	1288	110	792	0	FALSE	ACH-000316
SNU886_LIVER	IGHMBP2--RP11-757G1.5	26	8	IGHMBP2	19223	chr11:68707239:+	RP11-757G1.5	23920	chr11:68709455:-	INCL_NON_REF_SPLICE	YES	64	0	0.35	1	0.1969	0.0606	LOCAL_INVERSION:+:-:[901],IGHMBP2->chr11:68671310-68708070:+,immunoglobulin_mu_binding_protein_2,RP11-757G1.5->chr11:68708971-68710320:-	SNU886_LIVER	0.35	1	0.2575	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	MT-ND6--MT-TE	19	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1439	0.0606	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU886_LIVER	1	1	0.2045	FALSE	499	1288	110	792	0	FALSE	ACH-000316
SNU886_LIVER	PLXDC1--TAF13	20	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1515	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SNU886_LIVER	1	1	0.1515	TRUE	7	10	0	216	0	FALSE	ACH-000316
SNU886_LIVER	MT-ND6--MT-TE	15	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.1136	0.0833	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU886_LIVER	0.93	1	0.1969	FALSE	499	1288	110	792	0	FALSE	ACH-000316
SNU886_LIVER	MT-ND6--MT-TE	10	21	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0757	0.159	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU886_LIVER	0.94	1	0.2347	FALSE	499	1288	110	792	0	FALSE	ACH-000316
SNU886_LIVER	CALM3--MT-ND4L	12	5	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1301	0	0.01	1	0.0909	0.0379	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU886_LIVER	0.01	1	0.1288	FALSE	1	1	0	107	0	FALSE	ACH-000316
SNU886_LIVER	MT-CO3--MT-ATP6	6	23	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	YES	10	0	0.74	1	0.0454	0.1742	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU886_LIVER	0.74	1	0.2196	FALSE	189	492	56	216	0	FALSE	ACH-000316
SNU886_LIVER	NRIP1--AF127936.7	11	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0833	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU886_LIVER	1	1	0.0833	FALSE	292	1546	117	613	0	FALSE	ACH-000316
SNU886_LIVER	C15orf57--CBX3	8	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	68	37	0.2	0.31	0.0606	0.0682	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU886_LIVER	0.2	0.31	0.1288	TRUE	267	562	48	632	0	FALSE	ACH-000316
SNU886_LIVER	SLC1A5--MT-ND4L	10	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0757	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU886_LIVER	1	1	0.0757	FALSE	0	0	0	189	0	FALSE	ACH-000316
SNU886_LIVER	MT-TA--MT-TC	9	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0682	0.0151	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU886_LIVER	1	1	0.0833	FALSE	462	80	0	856	0	FALSE	ACH-000316
SNU886_LIVER	C15orf57--CBX3	8	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	67	38	0.16	0.25	0.0606	0.0379	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU886_LIVER	0.16	0.25	0.0985	TRUE	267	562	48	632	0	FALSE	ACH-000316
SNU886_LIVER	MT-CO3--MT-ATP6	4	20	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	964	0.96	0.02	0.0303	0.1515	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU886_LIVER	0.02	0.96	0.1818	FALSE	189	492	56	216	0	FALSE	ACH-000316
SNU886_LIVER	MT-CO3--MT-ATP6	4	20	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	736	0.96	0.03	0.0303	0.1515	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU886_LIVER	0.03	0.96	0.1818	FALSE	189	492	56	216	0	FALSE	ACH-000316
SNU886_LIVER	MT-ND6--MT-TE	4	20	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0303	0.1515	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU886_LIVER	0.92	1	0.1818	FALSE	499	1288	110	792	0	FALSE	ACH-000316
SNU886_LIVER	MT-ND6--MT-TE	3	20	MT-ND6	1162	chrM:14512:-	MT-TE	4552	chrM:14716:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0227	0.1515	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU886_LIVER	0.96	1	0.1742	FALSE	499	1288	110	792	0	FALSE	ACH-000316
SNU886_LIVER	MTATP6P1--MT-CO2	8	0	MTATP6P1	1108	chr1:569183:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU886_LIVER	1	1	0.0606	FALSE	0	2	0	1	0	FALSE	ACH-000316
SNU886_LIVER	MTATP6P1--MT-ND1	7	0	MTATP6P1	1126	chr1:569201:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.053	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU886_LIVER	1	1	0.053	FALSE	16	0	0	13	0	FALSE	ACH-000316
SNU886_LIVER	WTAPP1--RUVBL1	7	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.053	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	SNU886_LIVER	1	1	0.053	TRUE	9	252	6	66	0	FALSE	ACH-000316
SNU886_LIVER	IGHMBP2--RP11-757G1.5	5	7	IGHMBP2	19223	chr11:68707239:+	RP11-757G1.5	23925	chr11:68709450:-	INCL_NON_REF_SPLICE	YES	64	3	0.16	0.8	0.0379	0.053	LOCAL_INVERSION:+:-:[901],IGHMBP2->chr11:68671310-68708070:+,immunoglobulin_mu_binding_protein_2,RP11-757G1.5->chr11:68708971-68710320:-	SNU886_LIVER	0.16	0.8	0.0909	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	RP11-96H19.1--RP11-446N19.1	6	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0454	0.0151	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU886_LIVER	1	1	0.0605	FALSE	515	4851	409	746	0	FALSE	ACH-000316
SNU886_LIVER	IGHMBP2--RP11-757G1.5	5	3	IGHMBP2	19223	chr11:68707239:+	RP11-757G1.5	23962	chr11:68709413:-	INCL_NON_REF_SPLICE	YES	64	5	0.11	0.62	0.0379	0.0227	LOCAL_INVERSION:+:-:[901],IGHMBP2->chr11:68671310-68708070:+,immunoglobulin_mu_binding_protein_2,RP11-757G1.5->chr11:68708971-68710320:-	SNU886_LIVER	0.11	0.62	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	MT-CO3--MT-ATP6	3	11	MT-CO3	1033	chrM:9239:+	MT-ATP6	4768	chrM:8510:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0227	0.0833	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU886_LIVER	0.93	1	0.106	FALSE	189	492	56	216	0	FALSE	ACH-000316
SNU886_LIVER	MT-ND6--MT-TE	3	11	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0227	0.0833	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU886_LIVER	1	1	0.106	FALSE	499	1288	110	792	0	FALSE	ACH-000316
SNU886_LIVER	MT-ND6--MT-TE	3	11	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0227	0.0833	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU886_LIVER	0.88	1	0.106	FALSE	499	1288	110	792	0	FALSE	ACH-000316
SNU886_LIVER	NRIP1--AF127936.7	5	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.24	1	0.0379	0.0227	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU886_LIVER	0.24	1	0.0606	FALSE	164	806	69	479	0	FALSE	ACH-000316
SNU886_LIVER	MT-CO3--MT-ATP6	5	1	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0379	0.0076	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU886_LIVER	0.6	1	0.0455	FALSE	189	492	56	216	0	FALSE	ACH-000316
SNU886_LIVER	MT-CO3--MT-ATP6	5	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.55	1	0.0379	0.0076	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU886_LIVER	0.55	1	0.0455	FALSE	189	492	56	216	0	FALSE	ACH-000316
SNU886_LIVER	FTH1--ACTB	5	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU886_LIVER	1	1	0.0379	TRUE	1	0	0	97	0	FALSE	ACH-000316
SNU886_LIVER	MT-CO2--MT-ND2	5	0	MT-CO2	1301	chrM:7886:+	MT-ND2	5531	chrM:5316:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU886_LIVER	1	1	0.0379	FALSE	105	46	5	21	0	FALSE	ACH-000316
SNU886_LIVER	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU886_LIVER	1	1	0.0379	FALSE	462	80	0	856	0	FALSE	ACH-000316
SNU886_LIVER	MTATP6P1--MT-CO2	5	0	MTATP6P1	1120	chr1:569195:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU886_LIVER	1	1	0.0379	FALSE	0	2	0	1	0	FALSE	ACH-000316
SNU886_LIVER	MT-ND6--MT-TE	3	7	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0227	0.053	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU886_LIVER	1	1	0.0757	FALSE	499	1288	110	792	0	FALSE	ACH-000316
SNU886_LIVER	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0303	0.0227	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU886_LIVER	1	1	0.053	FALSE	407	2205	196	549	0	FALSE	ACH-000316
SNU886_LIVER	MT-CO3--MT-ATP6	4	2	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0303	0.0151	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU886_LIVER	0.86	1	0.0454	FALSE	189	492	56	216	0	FALSE	ACH-000316
SNU886_LIVER	MT-CO2--MT-ND2	4	0	MT-CO2	1240	chrM:7825:+	MT-ND2	5552	chrM:5337:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU886_LIVER	1	1	0.0303	FALSE	105	46	5	21	0	FALSE	ACH-000316
SNU886_LIVER	MT-CO2--MT-ND2	4	0	MT-CO2	1285	chrM:7870:+	MT-ND2	5522	chrM:5307:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU886_LIVER	1	1	0.0303	FALSE	105	46	5	21	0	FALSE	ACH-000316
SNU886_LIVER	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU886_LIVER	1	1	0.0303	FALSE	189	492	56	216	0	FALSE	ACH-000316
SNU886_LIVER	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU886_LIVER	1	1	0.0303	FALSE	499	1288	110	792	0	FALSE	ACH-000316
SNU886_LIVER	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU886_LIVER	1	1	0.0303	FALSE	499	1288	110	792	0	FALSE	ACH-000316
SNU886_LIVER	RP11-141M1.3--STARD13	3	2	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	18	0.83	0.22	0.0227	0.0151	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SNU886_LIVER	0.22	0.83	0.0378	FALSE	141	264	50	91	0	FALSE	ACH-000316
SNU886_LIVER	MT-CO2--MT-ND2	3	1	MT-CO2	1345	chrM:7930:+	MT-ND2	5570	chrM:5355:+	INCL_NON_REF_SPLICE	YES	14283	2864	0	0	0.0227	0.0076	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU886_LIVER	0	0	0.0303	FALSE	105	46	5	21	0	FALSE	ACH-000316
SNU886_LIVER	MT-CO2--MT-ND2	3	0	MT-CO2	1231	chrM:7816:+	MT-ND2	4715	chrM:4500:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU886_LIVER	1	1	0.0227	FALSE	105	46	5	21	0	FALSE	ACH-000316
SNU886_LIVER	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU886_LIVER	1	1	0.0227	FALSE	499	1288	110	792	0	FALSE	ACH-000316
SNU886_LIVER	MTATP6P1--MT-CO2	3	0	MTATP6P1	1122	chr1:569197:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0227	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU886_LIVER	1	1	0.0227	FALSE	0	2	0	1	0	FALSE	ACH-000316
SNU886_LIVER	MTATP6P1--MT-ND1	3	0	MTATP6P1	1400	chr1:569475:+	MT-ND1	5195	chrM:3820:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0227	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SNU886_LIVER	1	1	0.0227	FALSE	16	0	0	13	0	FALSE	ACH-000316
SNU886_LIVER	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0227	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU886_LIVER	1	1	0.0227	TRUE	0	0	0	434	0	FALSE	ACH-000316
SNU886_LIVER	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.22	1	0.0151	0.0151	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU886_LIVER	0.22	1	0.0302	FALSE	125	705	46	456	0	FALSE	ACH-000316
SNU886_LIVER	ASAP1--FAM49B	2	1	ASAP1	18709	chr8:131191510:-	FAM49B	49409	chr8:130983241:-	ONLY_REF_SPLICE	YES	104	15	0.03	0.17	0.0151	0.0076	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	SNU886_LIVER	0.03	0.17	0.0227	FALSE	0	0	0	1	0	FALSE	ACH-000316
SNU886_LIVER	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	4	1	0.43	0.0151	0.0076	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU886_LIVER	0.43	1	0.0227	TRUE	477	1352	189	275	0	FALSE	ACH-000316
SNU886_LIVER	AC016629.8--HNRNPUL1	2	0	AC016629.8	1281	chr19:59070776:+	HNRNPUL1	14458	chr19:41774128:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	AC016629.8->chr19:59070496-59086164:+,HNRNPUL1->chr19:41768401-41813503:+,heterogeneous_nuclear_ribonucleoprotein_U_like_1	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	AGAP1--GCA	2	0	AGAP1	14318	chr2:236715975:+	GCA	43887	chr2:163204088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,GCA->chr2:163175350-163228105:+,grancalcin	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	AGAP3--KLF11	2	0	AGAP3	12339	chr7:150817832:+	KLF11	32917	chr2:10186277:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	AGAP3->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_3,chr7:150782918-150841523:+,KLF11->Kruppel-like_factor_11,chr2:10182976-10194963:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	CALM2--FAM207A	2	0	CALM2	1161	chr2:47403580:-	FAM207A	18448	chr21:46380015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,FAM207A->chr21:46359925-46396904:+,family_with_sequence_similarity_207_member_A	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	CDC25B--PPM1B	2	0	CDC25B	1209	chr20:3767786:+	PPM1B	18898	chr2:44436349:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	CDC25B->Oncogene{Bushman},cell_division_cycle_25B,chr20:3767578-3786762:+,PPM1B->chr2:44395108-44471523:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1B	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	COL4A1--ARHGEF7	2	0	COL4A1	1206	chr13:110959291:-	ARHGEF7	65932	chr13:111919895:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1,ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	DDX39B--FTSJ1	2	0	DDX39B	9529	chr6:31500557:-	FTSJ1	21954	chrX:48344124:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	DDX39B->DEAD-box_helicase_39B,chr6:31497996-31510225:-,FTSJ1->FtsJ_RNA_methyltransferase_homolog_1_(E._coli),chrX:48334541-48344752:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	DGCR14--SQSTM1	2	0	DGCR14	2985	chr22:19130051:-	SQSTM1	30727	chr5:179263436:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	DGCR14->DiGeorge_syndrome_critical_region_gene_14,chr22:19117792-19132197:-,SQSTM1->chr5:179233388-179265078:+,sequestosome_1	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	DMRTA1--RP11-399D6.2	2	0	DMRTA1	1892	chr9:22447731:+	RP11-399D6.2	11667	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+,RP11-399D6.2->chr9:22646199-22824212:+	SNU886_LIVER	1	1	0.0151	TRUE	0	1	0	4	1	TRUE	ACH-000316
SNU886_LIVER	DNMT1--MKI67	2	0	DNMT1	10483	chr19:10287968:-	MKI67	45191	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	DSE--UBR2	2	0	DSE	2645	chr6:116580130:+	UBR2	29286	chr6:42559889:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	DSE->chr6:116575336-116762424:+,dermatan_sulfate_epimerase,UBR2->chr6:42531800-42661242:+,ubiquitin_protein_ligase_E3_component_n-recognin_2	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	SNU886_LIVER	1	1	0.0151	TRUE	0	6	0	16	3	TRUE	ACH-000316
SNU886_LIVER	HIATL1--HABP4	2	0	HIATL1	4664	chr9:97200810:+	HABP4	24671	chr9:99246744:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	HIATL1->chr9:97136833-97223324:+,HABP4->chr9:99212483-99253618:+,hyaluronan_binding_protein_4	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	HNRNPLL--XPO1	2	0	HNRNPLL	4397	chr2:38818672:-	XPO1	24888	chr2:61761038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	LINC00963--PPP2R4	2	0	LINC00963	2938	chr9:132251578:+	PPP2R4	39837	chr9:131904724:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	LINC00963->chr9:132245730-132275947:+,long_intergenic_non-protein_coding_RNA_963,PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	LINC01014--CCDC132	2	0	LINC01014	1175	chr3:178137163:+	CCDC132	31332	chr7:92952923:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,CCDC132->chr7:92861653-92988338:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	MIR181A1HG--KIAA0408	2	0	MIR181A1HG	1204	chr1:198906355:-	KIAA0408	17693	chr6:127765427:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	MIR181A1HG->MIR181A1_host_gene,chr1:198776622-198906558:-,KIAA0408->KIAA0408,chr6:127761488-127780536:-	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	MVD--AP3D1	2	0	MVD	1151	chr16:88729419:-	AP3D1	17139	chr19:2138713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	MVD->chr16:88718343-88729569:-,mevalonate_diphosphate_decarboxylase,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	NUDCD1--PVT1	2	0	NUDCD1	1493	chr8:110346122:-	PVT1	40960	chr8:129108764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	NUDCD1->NudC_domain_containing_1,chr8:110253148-110346614:-,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	NUP85--IPO7	2	0	NUP85	1136	chr17:73201889:+	IPO7	25943	chr11:9430033:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	NUP85->chr17:73201754-73231853:+,nucleoporin_85,IPO7->chr11:9406169-9469673:+,importin_7	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	PLCXD2--TAB2	2	0	PLCXD2	1733	chr3:111394255:+	TAB2	24384	chr6:149699154:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	PLCXD2->chr3:111393523-111565294:+,phosphatidylinositol_specific_phospholipase_C_X_domain_containing_2,TAB2->TGF-beta_activated_kinase_1/MAP3K7_binding_protein_2,chr6:149539777-149732749:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	PNISR--MSH3	2	0	PNISR	1117	chr6:99873091:-	MSH3	41668	chr5:80083384:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-,MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	PTPDC1--ENAH	2	0	PTPDC1	1334	chr9:96793409:+	ENAH	21565	chr1:225755116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	PTPDC1->chr9:96793076-96872138:+,protein_tyrosine_phosphatase_domain_containing_1,ENAH->Oncogene{Bushman},chr1:225674537-225840844:-,enabled_homolog_(Drosophila)	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	PXMP2--ANKLE2	2	0	PXMP2	2662	chr12:133266962:+	ANKLE2	21143	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	LOCAL_INVERSION:+:-:[4978],PXMP2->chr12:133264192-133297276:+,peroxisomal_membrane_protein_2,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	SNU886_LIVER	1	1	0.0151	TRUE	0	1	0	4	0	TRUE	ACH-000316
SNU886_LIVER	RAB8B--ANXA2	2	0	RAB8B	1280	chr15:63481947:+	ANXA2	29428	chr15:60678285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},{Klijn_CCL:Urinary_Bladder=1},RAB8B->RAB8B,_member_RAS_oncogene_family,chr15:63481668-63559981:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	2	0	TRUE	ACH-000316
SNU886_LIVER	RCC1--QKI	2	0	RCC1	2175	chr1:28834672:+	QKI	29508	chr6:163983014:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	RNF126--BSG	2	0	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	SNU886_LIVER	1	1	0.0151	TRUE	0	2	0	12	0	TRUE	ACH-000316
SNU886_LIVER	SF1--FUS	2	0	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	SNU886_LIVER	1	1	0.0151	TRUE	5	20	0	32	0	FALSE	ACH-000316
SNU886_LIVER	SLC25A17--ST13	2	0	SLC25A17	1205	chr22:41215199:-	ST13	25148	chr22:41236696:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	LOCAL_REARRANGEMENT:-:[5136],SLC25A17->chr22:41165634-41215403:-,solute_carrier_family_25_member_17,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	SND1--TES	2	0	SND1	1272	chr7:127292505:+	TES	43092	chr7:115874588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	SRSF2--RALGPS2	2	0	SRSF2	3314	chr17:74731143:-	RALGPS2	16206	chr1:178846633:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	SRSF2->Oncogene{Bushman},chr17:74730197-74733456:-,serine/arginine-rich_splicing_factor_2,RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	SRSF4--YTHDF2	2	0	SRSF4	1342	chr1:29508158:-	YTHDF2	21618	chr1:29095441:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	SRSF4->chr1:29474255-29508499:-,serine/arginine-rich_splicing_factor_4,YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+	SNU886_LIVER	1	1	0.0151	TRUE	0	1	0	1	0	TRUE	ACH-000316
SNU886_LIVER	STAM--RSU1	2	0	STAM	2340	chr10:17702547:+	RSU1	20851	chr10:16824083:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	STAM->chr10:17686124-17757913:+,signal_transducing_adaptor_molecule,RSU1->Ras_suppressor_protein_1,chr10:16632610-16859527:-	SNU886_LIVER	1	1	0.0151	TRUE	0	1	0	1	0	TRUE	ACH-000316
SNU886_LIVER	TXN2--RBM39	2	0	TXN2	2456	chr22:36876622:-	RBM39	30997	chr20:34293252:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	TXN2->chr22:36863083-36878077:-,thioredoxin_2,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	UBC--DNAJC5	2	0	UBC	2915	chr12:125399133:-	DNAJC5	10058	chr20:62559688:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	UBC->chr12:125396150-125401914:-,ubiquitin_C,DNAJC5->DnaJ_heat_shock_protein_family_(Hsp40)_member_C5,chr20:62526518-62567384:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	UGDH--SMIM14	2	0	UGDH	2029	chr4:39528903:-	SMIM14	19868	chr4:39606800:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	LOCAL_REARRANGEMENT:-:[18019],UGDH->UDP-glucose_6-dehydrogenase,chr4:39500375-39529931:-,SMIM14->chr4:39547950-39640710:-,small_integral_membrane_protein_14	SNU886_LIVER	1	1	0.0151	TRUE	0	1	0	4	0	TRUE	ACH-000316
SNU886_LIVER	YWHAE--ALB	2	0	YWHAE	1332	chr17:1303341:-	ALB	15397	chr4:74270086:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,ALB->albumin,chr4:74262831-74287129:+	SNU886_LIVER	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000316
SNU886_LIVER	ASAP1--FAM49B	1	1	ASAP1	7774	chr8:131370263:-	FAM49B	49409	chr8:130983241:-	ONLY_REF_SPLICE	YES	59	15	0.03	0.12	0.0076	0.0076	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	SNU886_LIVER	0.03	0.12	0.0152	FALSE	0	1	0	1	0	FALSE	ACH-000316
SNU886_LIVER	ASPH--ESYT3	1	1	ASPH	8053	chr8:62593527:-	ESYT3	65237	chr3:138192378:+	ONLY_REF_SPLICE	NO	902	23	0	0.08	0.0076	0.0076	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,ESYT3->chr3:138153428-138200528:+,extended_synaptotagmin_protein_3	SNU886_LIVER	0	0.08	0.0152	FALSE	0	0	0	1	0	FALSE	ACH-000316
SNU886_LIVER	CDKN2B-AS1--CDKN2B	1	1	CDKN2B-AS1	1384	chr9:21995160:+	CDKN2B	27553	chr9:22006246:-	ONLY_REF_SPLICE	NO	7	90	0.22	0.02	0.0076	0.0076	NEIGHBORS_OVERLAP:+:-:[6460],CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+,CDKN2B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:22002902-22009362:-,cyclin-dependent_kinase_inhibitor_2B	SNU886_LIVER	0.02	0.22	0.0152	FALSE	0	0	0	1	0	FALSE	ACH-000316
SNU886_LIVER	FNDC3B--PLD1	1	1	FNDC3B	6332	chr3:171851336:+	PLD1	49603	chr3:171507325:-	ONLY_REF_SPLICE	YES	97	13	0.02	0.13	0.0076	0.0076	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Coronary=1,Esophagus_-_Mucosa=1},FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,PLD1->Oncogene{Bushman},chr3:171318195-171528740:-,phospholipase_D1	SNU886_LIVER	0.02	0.13	0.0152	TRUE	0	2	0	4	1	FALSE	ACH-000316
SNU886_LIVER	PRKCA--CEP112	1	1	PRKCA	2421	chr17:64302245:+	CEP112	44428	chr17:64066119:-	ONLY_REF_SPLICE	YES	56	12	0.03	0.14	0.0076	0.0076	PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	SNU886_LIVER	0.03	0.14	0.0152	TRUE	0	0	0	1	0	FALSE	ACH-000316
SNU886_LIVER	SCARB1--UBC	1	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	100	43	0.02	0.04	0.0076	0.0076	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU886_LIVER	0.02	0.04	0.0152	TRUE	55	66	6	101	0	FALSE	ACH-000316
SNU886_LIVER	TLN2--TPM1	1	1	TLN2	1160	chr15:62682884:+	TPM1	85052	chr15:63349184:+	ONLY_REF_SPLICE	YES	3	4465	0.4	0	0.0076	0.0076	GTEx_FI:{Heart=[count:2=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},TLN2->chr15:62682725-63136830:+,talin_2,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	SNU886_LIVER	0	0.4	0.0152	FALSE	2	1	0	6	0	FALSE	ACH-000316
SNU886_LIVER	TNFAIP8--HSD17B4	1	1	TNFAIP8	1216	chr5:118604602:+	HSD17B4	45984	chr5:118872118:+	ONLY_REF_SPLICE	NO	50	158	0.04	0.01	0.0076	0.0076	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	SNU886_LIVER	0.01	0.04	0.0152	FALSE	0	1	0	1	0	FALSE	ACH-000316
SNU886_LIVER	ZFAND6--MTX2	1	1	ZFAND6	1242	chr15:80352151:+	MTX2	27345	chr2:177191553:+	ONLY_REF_SPLICE	YES	179	106	0.01	0.02	0.0076	0.0076	ZFAND6->chr15:80351910-80430735:+,zinc_finger_AN1-type_containing_6,MTX2->chr2:177134123-177202753:+,metaxin_2	SNU886_LIVER	0.01	0.02	0.0152	FALSE	0	0	0	1	0	FALSE	ACH-000316
ML1_THYROID	TIMM23B--LINC00843	144	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.3096	0.2274	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ML1_THYROID	0.99	1	1.537	TRUE	508	994	45	981	0	FALSE	ACH-000058
ML1_THYROID	KANSL1--ARL17B	127	40	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	30	29	0.85	0.85	1.155	0.3638	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	ML1_THYROID	0.85	0.85	1.5188	TRUE	181	1564	124	196	0	FALSE	ACH-000058
ML1_THYROID	TIMM23--RP11-464F9.1	82	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	187	2	0.32	0.98	0.7457	0.0455	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ML1_THYROID	0.32	0.98	0.7912	TRUE	519	3926	326	965	0	FALSE	ACH-000058
ML1_THYROID	MT-TA--MT-TN	83	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7548	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ML1_THYROID	1	1	0.7548	FALSE	369	2501	205	193	0	FALSE	ACH-000058
ML1_THYROID	COPB2--RP11-385J1.2	62	15	COPB2	7746	chr3:139098222:-	RP11-385J1.2	38769	chr3:178244413:-	ONLY_REF_SPLICE	YES	224	1	0.26	0.99	0.5639	0.1364	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,RP11-385J1.2->chr3:178244293-178578193:-	ML1_THYROID	0.26	0.99	0.7003	TRUE	0	0	0	1	0	TRUE	ACH-000058
ML1_THYROID	MT-ND6--MT-TE	59	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5366	0.0637	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ML1_THYROID	1	1	0.6003	FALSE	499	1288	110	792	0	FALSE	ACH-000058
ML1_THYROID	RP11-680G10.1--GSE1	42	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.84	0.382	0.0819	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ML1_THYROID	0.84	1	0.4639	TRUE	458	1351	185	561	0	FALSE	ACH-000058
ML1_THYROID	RP11-680G10.1--GSE1	39	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	25	1	0.64	0.3547	0.0455	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ML1_THYROID	0.64	1	0.4002	TRUE	465	1949	224	605	0	FALSE	ACH-000058
ML1_THYROID	MT-TA--MT-TC	37	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3365	0.0546	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ML1_THYROID	1	1	0.3911	FALSE	462	80	0	856	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	14	88	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	8	3	0.93	0.97	0.1273	0.8003	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.93	0.97	0.9276	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	5	96	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	8	0	0.93	1	0.0455	0.8731	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.93	1	0.9186	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	5	93	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	3	38	0.97	0.72	0.0455	0.8458	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.72	0.97	0.8913	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	6	86	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	3	29	0.97	0.76	0.0546	0.7821	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.76	0.97	0.8367	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	3	98	MT-CO3	1459	chrM:9665:+	MT-ATP6	4899	chrM:8641:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.0273	0.8913	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.97	1	0.9186	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	6	83	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	3	3	0.97	0.97	0.0546	0.7548	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.97	0.97	0.8094	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	5	85	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	2	1	0.98	0.99	0.0455	0.773	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.98	0.99	0.8185	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	3	91	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	11	3	0.9	0.97	0.0273	0.8276	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.9	0.97	0.8549	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-TA--MT-TN	5	77	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0455	0.7003	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ML1_THYROID	1	1	0.7458	FALSE	369	2501	205	193	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	3	84	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	3	2	0.97	0.98	0.0273	0.7639	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.97	0.98	0.7912	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	RP11-123O10.4--GRIP1	23	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2092	0.0182	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ML1_THYROID	1	1	0.2274	FALSE	416	2512	207	587	0	FALSE	ACH-000058
ML1_THYROID	COPB2--RP11-385J1.2	19	16	COPB2	8079	chr3:139097889:-	RP11-385J1.2	38769	chr3:178244413:-	ONLY_REF_SPLICE	YES	183	1	0.16	0.97	0.1728	0.1455	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,RP11-385J1.2->chr3:178244293-178578193:-	ML1_THYROID	0.16	0.97	0.3183	TRUE	0	0	0	1	0	TRUE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	4	71	MT-CO3	1061	chrM:9267:+	MT-ATP6	5343	chrM:9085:+	INCL_NON_REF_SPLICE	YES	1	1	0.99	0.99	0.0364	0.6457	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.99	0.99	0.6821	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-ND6--MT-TE	18	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.1637	0.1364	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ML1_THYROID	0.94	1	0.3001	FALSE	499	1288	110	792	0	FALSE	ACH-000058
ML1_THYROID	MT-TA--MT-TN	15	26	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1364	0.2365	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ML1_THYROID	1	1	0.3729	FALSE	369	2501	205	193	0	FALSE	ACH-000058
ML1_THYROID	MT-ND6--MT-TE	18	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1637	0.0637	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ML1_THYROID	1	1	0.2274	FALSE	499	1288	110	792	0	FALSE	ACH-000058
ML1_THYROID	NRIP1--AF127936.7	19	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.1728	0.0182	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ML1_THYROID	0.91	1	0.191	FALSE	292	1546	117	613	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	3	65	MT-CO3	1051	chrM:9257:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	3	0.99	0.96	0.0273	0.5911	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.96	0.99	0.6184	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	18	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	9	0	0.7	1	0.1637	0.0273	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.7	1	0.191	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-TA--MT-TN	4	58	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.5275	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ML1_THYROID	1	1	0.5639	FALSE	369	2501	205	193	0	FALSE	ACH-000058
ML1_THYROID	MT-TA--MT-TN	12	26	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1091	0.2365	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ML1_THYROID	1	1	0.3456	FALSE	369	2501	205	193	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	11	26	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.1	0.2365	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.95	1	0.3365	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	8	37	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.0728	0.3365	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.98	1	0.4093	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-TA--MT-TN	16	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1455	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ML1_THYROID	1	1	0.1455	FALSE	369	2501	205	193	0	FALSE	ACH-000058
ML1_THYROID	MT-TA--MT-TN	15	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1364	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ML1_THYROID	1	1	0.1364	FALSE	369	2501	205	193	0	FALSE	ACH-000058
ML1_THYROID	MT-TA--MT-TN	13	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1182	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ML1_THYROID	1	1	0.1182	FALSE	369	2501	205	193	0	FALSE	ACH-000058
ML1_THYROID	MT-ND6--MT-TE	6	26	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0546	0.2365	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ML1_THYROID	0.94	1	0.2911	FALSE	499	1288	110	792	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	3	37	MT-CO3	1020	chrM:9226:+	MT-ATP6	5206	chrM:8948:+	INCL_NON_REF_SPLICE	YES	0	43	1	0.48	0.0273	0.3365	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.48	1	0.3638	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-TA--MT-TN	3	37	MT-TA	1051	chrM:5605:-	MT-TN	4091	chrM:5708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0.3365	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ML1_THYROID	1	1	0.3638	FALSE	369	2501	205	193	0	FALSE	ACH-000058
ML1_THYROID	MT-CO1--MT-TY	12	0	MT-CO1	1041	chrM:5944:+	MT-TY	5563	chrM:5871:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1091	0	LOCAL_INVERSION:+:-:[13],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	ML1_THYROID	1	1	0.1091	FALSE	0	10	0	2	0	FALSE	ACH-000058
ML1_THYROID	RP11-96H19.1--RP11-446N19.1	11	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.88	0.94	0.1	0.0364	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ML1_THYROID	0.88	0.94	0.1364	FALSE	515	4851	409	746	0	FALSE	ACH-000058
ML1_THYROID	RP11-444D3.1--SOX5	11	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1	0.0182	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	ML1_THYROID	1	1	0.1182	TRUE	477	1352	189	275	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	4	29	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	6	0	0.85	1	0.0364	0.2637	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.85	1	0.3001	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-ND6--MT-TE	4	24	MT-ND6	1053	chrM:14621:-	MT-TE	4526	chrM:14742:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.2183	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ML1_THYROID	1	1	0.2547	FALSE	499	1288	110	792	0	FALSE	ACH-000058
ML1_THYROID	MT-TA--MT-TC	10	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0909	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ML1_THYROID	1	1	0.0909	FALSE	462	80	0	856	0	FALSE	ACH-000058
ML1_THYROID	C15orf57--CBX3	9	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	56	10	0.18	0.55	0.0819	0.0273	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	ML1_THYROID	0.18	0.55	0.1092	TRUE	267	562	48	632	0	FALSE	ACH-000058
ML1_THYROID	MT-ND6--MT-TE	4	22	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.2001	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ML1_THYROID	1	1	0.2365	FALSE	499	1288	110	792	0	FALSE	ACH-000058
ML1_THYROID	MT-TA--MT-TC	8	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0728	0.0546	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ML1_THYROID	1	1	0.1274	FALSE	462	80	0	856	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	4	17	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.0364	0.1546	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.91	1	0.191	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	4	14	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.86	0.0364	0.1273	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.86	1	0.1637	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	COPB2--RP11-385J1.2	3	16	COPB2	8079	chr3:139097889:-	RP11-385J1.2	36447	chr3:178255184:-	ONLY_REF_SPLICE	YES	183	0	0.09	1	0.0273	0.1455	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,RP11-385J1.2->chr3:178244293-178578193:-	ML1_THYROID	0.09	1	0.1728	TRUE	0	0	0	1	0	TRUE	ACH-000058
ML1_THYROID	COPB2--RP11-385J1.2	3	16	COPB2	8079	chr3:139097889:-	RP11-385J1.2	37583	chr3:178253687:-	ONLY_REF_SPLICE	YES	183	2	0.09	0.9	0.0273	0.1455	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,RP11-385J1.2->chr3:178244293-178578193:-	ML1_THYROID	0.09	0.9	0.1728	TRUE	0	0	0	1	0	TRUE	ACH-000058
ML1_THYROID	COPB2--RP11-385J1.2	3	15	COPB2	7746	chr3:139098222:-	RP11-385J1.2	37583	chr3:178253687:-	ONLY_REF_SPLICE	YES	224	2	0.07	0.9	0.0273	0.1364	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,RP11-385J1.2->chr3:178244293-178578193:-	ML1_THYROID	0.07	0.9	0.1637	TRUE	0	0	0	1	0	TRUE	ACH-000058
ML1_THYROID	MT-ND6--MT-TE	3	15	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0273	0.1364	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ML1_THYROID	0.95	1	0.1637	FALSE	499	1288	110	792	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	3	14	MT-CO3	1005	chrM:9211:+	MT-ATP6	5172	chrM:8914:+	INCL_NON_REF_SPLICE	YES	0	37	1	0.31	0.0273	0.1273	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.31	1	0.1546	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-TL1--MT-RNR2	4	9	MT-TL1	1104	chrM:3333:+	MT-RNR2	5603	chrM:3198:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0364	0.0819	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ML1_THYROID	1	1	0.1183	FALSE	7	521	16	32	0	FALSE	ACH-000058
ML1_THYROID	CTD-2337A12.1--CAST	6	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0546	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	ML1_THYROID	1	1	0.0546	TRUE	347	1186	183	220	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	6	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0546	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	1	1	0.0546	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0546	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ML1_THYROID	1	1	0.0546	FALSE	499	1288	110	792	0	FALSE	ACH-000058
ML1_THYROID	MT-TA--MT-TC	4	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.0546	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ML1_THYROID	1	1	0.091	FALSE	462	80	0	856	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	4	5	MT-CO3	1162	chrM:9368:+	MT-ATP6	5445	chrM:9187:+	INCL_NON_REF_SPLICE	YES	12	0	0.43	1	0.0364	0.0455	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.43	1	0.0819	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-ND6--MT-TE	5	1	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0455	0.0091	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ML1_THYROID	1	1	0.0546	FALSE	499	1288	110	792	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	5	0	MT-CO3	1012	chrM:9218:+	MT-ATP6	5425	chrM:9167:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0455	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	1	1	0.0455	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-ND6--MT-TE	4	4	MT-ND6	1198	chrM:14476:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.0364	0.0364	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ML1_THYROID	0.73	1	0.0728	FALSE	499	1288	110	792	0	FALSE	ACH-000058
ML1_THYROID	RP11-120D5.1--MID1	5	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0455	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	ML1_THYROID	1	1	0.0455	FALSE	16	356	14	466	0	FALSE	ACH-000058
ML1_THYROID	COPB2--RP11-385J1.2	1	15	COPB2	7746	chr3:139098222:-	RP11-385J1.2	36447	chr3:178255184:-	ONLY_REF_SPLICE	NO	224	0	0.07	1	0.0091	0.1364	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,RP11-385J1.2->chr3:178244293-178578193:-	ML1_THYROID	0.07	1	0.1455	TRUE	0	0	0	1	0	TRUE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	3	7	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	6	0	0.62	1	0.0273	0.0637	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.62	1	0.091	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	NRIP1--AF127936.7	4	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	19	0	0.27	1	0.0364	0.0273	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ML1_THYROID	0.27	1	0.0637	FALSE	125	705	46	456	0	FALSE	ACH-000058
ML1_THYROID	MT-ND6--MT-TE	4	1	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.0091	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ML1_THYROID	1	1	0.0455	FALSE	499	1288	110	792	0	FALSE	ACH-000058
ML1_THYROID	MT-ND6--MT-TE	4	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.0091	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ML1_THYROID	1	1	0.0455	FALSE	499	1288	110	792	0	FALSE	ACH-000058
ML1_THYROID	NRIP1--AF127936.7	3	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	21	0	0.28	1	0.0273	0.0455	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ML1_THYROID	0.28	1	0.0728	FALSE	164	806	69	479	0	FALSE	ACH-000058
ML1_THYROID	PRR16--CTD-2334D19.1	4	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	21	0	0.19	1	0.0364	0.0091	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	ML1_THYROID	0.19	1	0.0455	FALSE	56	216	12	147	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	1	1	0.0364	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ML1_THYROID	1	1	0.0364	FALSE	369	2501	205	193	0	FALSE	ACH-000058
ML1_THYROID	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ML1_THYROID	1	1	0.0364	FALSE	369	2501	205	193	0	FALSE	ACH-000058
ML1_THYROID	RP1-34H18.1--NAV3	4	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	ML1_THYROID	1	1	0.0364	TRUE	254	575	65	124	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	3	3	MT-CO3	1132	chrM:9338:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	6	0	0.5	1	0.0273	0.0273	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.5	1	0.0546	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	KANSL1--ARL17B	1	10	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	27	29	0.29	0.28	0.0091	0.0909	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	ML1_THYROID	0.28	0.29	0.1	TRUE	105	90	7	93	0	FALSE	ACH-000058
ML1_THYROID	MT-CO1--MT-TY	3	1	MT-CO1	1186	chrM:6089:+	MT-TY	5492	chrM:5942:-	INCL_NON_REF_SPLICE	YES	1098	0	0	1	0.0273	0.0091	LOCAL_INVERSION:+:-:[13],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	ML1_THYROID	0	1	0.0364	FALSE	0	10	0	2	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	3	1	MT-CO3	1153	chrM:9359:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	11	0	0.27	1	0.0273	0.0091	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	0.27	1	0.0364	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0182	0.0455	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ML1_THYROID	0.78	1	0.0637	FALSE	275	511	55	178	0	FALSE	ACH-000058
ML1_THYROID	ALDOA--MT-ATP6	3	0	ALDOA	7477	chr16:30077249:+	MT-ATP6	15385	chrM:8905:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	1	1	0.0273	FALSE	0	0	0	1	0	FALSE	ACH-000058
ML1_THYROID	MT-CO1--MT-TY	3	0	MT-CO1	1036	chrM:5939:+	MT-TY	5580	chrM:5854:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	LOCAL_INVERSION:+:-:[13],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	ML1_THYROID	1	1	0.0273	FALSE	0	10	0	2	0	FALSE	ACH-000058
ML1_THYROID	MT-CO1--MT-TY	3	0	MT-CO1	1064	chrM:5967:+	MT-TY	5520	chrM:5914:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	LOCAL_INVERSION:+:-:[13],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	ML1_THYROID	1	1	0.0273	FALSE	0	10	0	2	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	3	0	MT-CO3	1065	chrM:9271:+	MT-ATP6	5454	chrM:9196:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	1	1	0.0273	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-CO3--MT-ATP6	3	0	MT-CO3	1032	chrM:9238:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ML1_THYROID	1	1	0.0273	FALSE	189	492	56	216	0	FALSE	ACH-000058
ML1_THYROID	MT-TA--MT-TN	3	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ML1_THYROID	1	1	0.0273	FALSE	369	2501	205	193	0	FALSE	ACH-000058
ML1_THYROID	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.75	1	0.0182	0.0364	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ML1_THYROID	0.75	1	0.0546	FALSE	407	2205	196	549	0	FALSE	ACH-000058
ML1_THYROID	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0182	0.0364	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ML1_THYROID	0.86	1	0.0546	FALSE	467	2173	244	435	0	FALSE	ACH-000058
ML1_THYROID	SLC1A5--MT-ND4L	3	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0273	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ML1_THYROID	1	1	0.0273	FALSE	0	0	0	189	0	FALSE	ACH-000058
ML1_THYROID	RP11-123O10.4--GRIP1	2	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0.0182	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ML1_THYROID	1	1	0.0364	FALSE	93	270	15	244	0	FALSE	ACH-000058
ML1_THYROID	RP11-444D3.1--SOX5	2	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0182	0.0182	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	ML1_THYROID	0.67	1	0.0364	TRUE	274	363	69	150	0	FALSE	ACH-000058
ML1_THYROID	RP11-114H23.1--RP11-114H23.2	2	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0.0091	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	ML1_THYROID	1	1	0.0273	FALSE	81	155	12	160	0	FALSE	ACH-000058
ML1_THYROID	ARL8B--ITPR1	2	0	ARL8B	1369	chr3:5164273:+	ITPR1	82367	chr3:4878458:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	ARL8B->ADP_ribosylation_factor_like_GTPase_8B,chr3:5163905-5222596:+,ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1	ML1_THYROID	1	1	0.0182	TRUE	0	1	0	2	1	TRUE	ACH-000058
ML1_THYROID	KANSL1--ARL17B	1	3	KANSL1	9741	chr17:44171926:-	ARL17B	40066	chr17:44388641:-	ONLY_REF_SPLICE	NO	30	10	0.12	0.29	0.0091	0.0273	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	ML1_THYROID	0.12	0.29	0.0364	TRUE	13	9	0	5	0	FALSE	ACH-000058
ML1_THYROID	COPB2--RP11-385J1.2	1	2	COPB2	1185	chr3:139108390:-	RP11-385J1.2	38769	chr3:178244413:-	ONLY_REF_SPLICE	YES	18	1	0.14	0.75	0.0091	0.0182	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,RP11-385J1.2->chr3:178244293-178578193:-	ML1_THYROID	0.14	0.75	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000058
ML1_THYROID	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0091	0.0182	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	ML1_THYROID	1	1	0.0273	TRUE	160	277	29	98	0	FALSE	ACH-000058
ML1_THYROID	B4GALT1--BAG1	1	1	B4GALT1	1599	chr9:33166756:-	BAG1	16811	chr9:33262828:-	ONLY_REF_SPLICE	YES	66	51	0.03	0.04	0.0091	0.0091	GTEx_v2:{count=2;pct=0.02%;dist=Liver=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Cervix=3},LOCAL_REARRANGEMENT:-:[80464],B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,BAG1->BCL2_associated_athanogene_1,Oncogene{Bushman},chr9:33247818-33264761:-	ML1_THYROID	0.03	0.04	0.0182	TRUE	0	5	1	5	3	TRUE	ACH-000058
ML1_THYROID	BRWD1--KIAA1958	1	1	BRWD1	4942	chr21:40670358:-	KIAA1958	58038	chr9:115336337:+	ONLY_REF_SPLICE	YES	19	2	0.1	0.5	0.0091	0.0091	BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,KIAA1958->KIAA1958,chr9:115249127-115431677:+	ML1_THYROID	0.1	0.5	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000058
ML1_THYROID	MED16--CNN2	1	1	MED16	9051	chr19:879937:-	CNN2	24620	chr19:1036129:+	ONLY_REF_SPLICE	YES	37	107	0.05	0.02	0.0091	0.0091	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood=[count:2=pct:1.1],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Whole_Blood=3,Liver=1,Esophagus_-_Mucosa=1,Spleen=1},MED16->chr19:867962-893218:-,mediator_complex_subunit_16,CNN2->calponin_2,chr19:1026298-1039068:+	ML1_THYROID	0.02	0.05	0.0182	TRUE	4	0	1	5	0	FALSE	ACH-000058
ML1_THYROID	PCDHA10--TRO	1	1	PCDHA10	3427	chr5:140238021:+	TRO	19499	chrX:54954100:+	ONLY_REF_SPLICE	YES	23	55	0.08	0.04	0.0091	0.0091	PCDHA10->chr5:140235595-140391929:+,protocadherin_alpha_10,TRO->chrX:54946895-54957864:+,trophinin	ML1_THYROID	0.04	0.08	0.0182	TRUE	0	0	0	1	0	FALSE	ACH-000058
ML1_THYROID	RPS6KB1--VMP1	1	1	RPS6KB1	1240	chr17:57970686:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	NO	43	146	0.04	0.01	0.0091	0.0091	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	ML1_THYROID	0.01	0.04	0.0182	FALSE	0	9	0	10	6	FALSE	ACH-000058
RMGI_OVARY	LDLR--BRK1	1686	633	LDLR	5037	chr19:11213462:+	BRK1	28270	chr3:10167310:+	ONLY_REF_SPLICE	YES	1029	784	0.69	0.75	22.7253	8.5321	{Klijn_CCL:Ovary=1},LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	RMGI_OVARY	0.69	0.75	31.2574	TRUE	0	0	0	2	0	TRUE	ACH-000719
RMGI_OVARY	LDLR--BRK1	1456	1191	LDLR	7851	chr19:11216276:+	BRK1	28270	chr3:10167310:+	ONLY_REF_SPLICE	YES	1	784	1	0.77	19.6252	16.0533	{Klijn_CCL:Ovary=1},LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	RMGI_OVARY	0.77	1	35.6785	TRUE	0	0	0	2	0	TRUE	ACH-000719
RMGI_OVARY	RXFP1--LINC00243	535	155	RXFP1	19586	chr4:159554628:+	LINC00243	35747	chr6:30766549:-	ONLY_REF_SPLICE	YES	905	9	0.43	0.99	7.2112	2.0892	RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1,LINC00243->chr6:30766431-30798436:-,long_intergenic_non-protein_coding_RNA_243	RMGI_OVARY	0.43	0.99	9.3004	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	TRPC4AP--AVPI1	227	167	TRPC4AP	7955	chr20:33632308:-	AVPI1	25357	chr10:99439672:-	ONLY_REF_SPLICE	YES	83	91	0.83	0.81	3.0597	2.251	TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,AVPI1->Oncogene{Bushman},arginine_vasopressin_induced_1,chr10:99437181-99447080:-	RMGI_OVARY	0.81	0.83	5.3107	TRUE	0	0	0	2	0	TRUE	ACH-000719
RMGI_OVARY	CLTC--RPS6KB1	208	106	CLTC	1316	chr17:57697534:+	RPS6KB1	41184	chr17:57987923:+	ONLY_REF_SPLICE	YES	220	15	0.59	0.95	2.8036	1.4288	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	RMGI_OVARY	0.59	0.95	4.2324	TRUE	0	1	0	5	0	TRUE	ACH-000719
RMGI_OVARY	LDLR--BRK1	22	642	LDLR	7851	chr19:11216276:+	BRK1	28913	chr3:10167953:+	ONLY_REF_SPLICE	YES	1	817	1	0.45	0.2965	8.6534	{Klijn_CCL:Ovary=1},LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	RMGI_OVARY	0.45	1	8.9499	TRUE	0	0	0	2	0	TRUE	ACH-000719
RMGI_OVARY	HSPBP1--GRK5	166	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.2375	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	RMGI_OVARY	1	1	2.2375	TRUE	1	39	0	134	39	FALSE	ACH-000719
RMGI_OVARY	PAWR--RP1-78O14.1	128	70	PAWR	9188	chr12:80007355:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	185	0	0.52	1	1.7253	0.9435	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	RMGI_OVARY	0.52	1	2.6688	FALSE	0	1	0	1	0	FALSE	ACH-000719
RMGI_OVARY	RNH1--DEAF1	122	68	RNH1	10330	chr11:497971:-	DEAF1	36259	chr11:644654:-	ONLY_REF_SPLICE	YES	403	45	0.32	0.81	1.6444	0.9166	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RNH1->chr11:494512-507300:-,ribonuclease/angiogenin_inhibitor_1,DEAF1->DEAF1,_transcription_factor,chr11:644233-706715:-	RMGI_OVARY	0.32	0.81	2.561	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MT-TA--MT-TN	138	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.8601	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RMGI_OVARY	1	1	1.8601	FALSE	369	2501	205	193	0	FALSE	ACH-000719
RMGI_OVARY	RXFP1--LINC00243	87	194	RXFP1	19586	chr4:159554628:+	LINC00243	32840	chr6:30782549:-	ONLY_REF_SPLICE	YES	905	0	0.24	1	1.1727	2.6149	RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1,LINC00243->chr6:30766431-30798436:-,long_intergenic_non-protein_coding_RNA_243	RMGI_OVARY	0.24	1	3.7876	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	LDLR--BRK1	3	490	LDLR	4987	chr19:11213412:+	BRK1	28270	chr3:10167310:+	INCL_NON_REF_SPLICE	YES	960	784	0.34	0.39	0.0404	6.6046	{Klijn_CCL:Ovary=1},LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	RMGI_OVARY	0.34	0.39	6.645	TRUE	0	0	0	2	0	TRUE	ACH-000719
RMGI_OVARY	MT-TA--MT-TC	118	13	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5905	0.1752	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RMGI_OVARY	1	1	1.7657	FALSE	462	80	0	856	0	FALSE	ACH-000719
RMGI_OVARY	TIMM23B--LINC00843	86	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1592	0.1752	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RMGI_OVARY	1	1	1.3344	TRUE	508	994	45	981	0	FALSE	ACH-000719
RMGI_OVARY	TBL1X--SHROOM2	77	30	TBL1X	6354	chrX:9608400:+	SHROOM2	40161	chrX:9905174:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.0379	0.4044	NEIGHBORS[66716],TBL1X->chrX:9431335-9687780:+,transducin_(beta)-like_1X-linked,SHROOM2->chrX:9754496-9917483:+,shroom_family_member_2	RMGI_OVARY	1	1	1.4423	FALSE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	LDLR--BRK1	1	324	LDLR	5037	chr19:11213462:+	BRK1	28913	chr3:10167953:+	ONLY_REF_SPLICE	NO	1029	817	0.24	0.28	0.0135	4.3671	{Klijn_CCL:Ovary=1},LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	RMGI_OVARY	0.24	0.28	4.3806	TRUE	0	0	0	2	0	TRUE	ACH-000719
RMGI_OVARY	MT-ND4--MT-ATP8	81	0	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0918	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RMGI_OVARY	1	1	1.0918	FALSE	231	217	16	283	0	FALSE	ACH-000719
RMGI_OVARY	LDLR--BRK1	7	284	LDLR	3681	chr19:11211021:+	BRK1	28270	chr3:10167310:+	ONLY_REF_SPLICE	YES	1521	784	0.16	0.27	0.0944	3.828	{Klijn_CCL:Ovary=1},LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	RMGI_OVARY	0.16	0.27	3.9224	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	TBC1D8--C12orf75	57	33	TBC1D8	6117	chr2:101767589:-	C12orf75	34129	chr12:105742380:+	ONLY_REF_SPLICE	YES	56	610	0.62	0.13	0.7683	0.4448	{Klijn_CCL:Ovary=1},TBC1D8->TBC1_domain_family_member_8,chr2:101624079-101869328:-,C12orf75->chr12:105629068-105789875:+,chromosome_12_open_reading_frame_75	RMGI_OVARY	0.13	0.62	1.2131	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MSI2--MRPS23	49	21	MSI2	17645	chr17:55478832:+	MRPS23	51602	chr17:55918621:-	ONLY_REF_SPLICE	YES	117	1373	0.37	0.05	0.6605	0.2831	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,MRPS23->chr17:55916842-55927417:-,mitochondrial_ribosomal_protein_S23	RMGI_OVARY	0.05	0.37	0.9436	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MT-TA--MT-TN	32	86	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4313	1.1592	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RMGI_OVARY	1	1	1.5905	FALSE	369	2501	205	193	0	FALSE	ACH-000719
RMGI_OVARY	TIMM23--RP11-464F9.1	52	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	226	2	0.2	0.97	0.7009	0.0539	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RMGI_OVARY	0.2	0.97	0.7548	TRUE	519	3926	326	965	0	FALSE	ACH-000719
RMGI_OVARY	MT-TA--MT-TN	22	123	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2965	1.6579	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RMGI_OVARY	1	1	1.9544	FALSE	369	2501	205	193	0	FALSE	ACH-000719
RMGI_OVARY	RXFP1--LINC00243	7	165	RXFP1	19586	chr4:159554628:+	LINC00243	32993	chr6:30782396:-	INCL_NON_REF_SPLICE	YES	905	19	0.16	0.9	0.0944	2.224	RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1,LINC00243->chr6:30766431-30798436:-,long_intergenic_non-protein_coding_RNA_243	RMGI_OVARY	0.16	0.9	2.3184	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	DEPDC1B--PDE4D	43	13	DEPDC1B	4088	chr5:59982789:-	PDE4D	46071	chr5:58511794:-	ONLY_REF_SPLICE	YES	123	0	0.31	1	0.5796	0.1752	{Klijn_CCL:Ovary=1},NEIGHBORS[74792],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D	RMGI_OVARY	0.31	1	0.7548	FALSE	0	1	0	1	0	FALSE	ACH-000719
RMGI_OVARY	MT-TA--MT-TN	32	34	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4313	0.4583	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RMGI_OVARY	1	1	0.8896	FALSE	369	2501	205	193	0	FALSE	ACH-000719
RMGI_OVARY	NUMB--COL4A1	40	1	NUMB	5521	chr14:73925199:-	COL4A1	32167	chr13:110895081:-	ONLY_REF_SPLICE	YES	0	99	1	0.29	0.5392	0.0135	NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RMGI_OVARY	0.29	1	0.5527	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RXFP1--LINC00243	9	117	RXFP1	18514	chr4:159549861:+	LINC00243	32840	chr6:30782549:-	ONLY_REF_SPLICE	YES	1251	0	0.09	1	0.1213	1.577	RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1,LINC00243->chr6:30766431-30798436:-,long_intergenic_non-protein_coding_RNA_243	RMGI_OVARY	0.09	1	1.6983	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	IDH2--RP11-443B7.2	29	29	IDH2	1229	chr15:90645508:-	RP11-443B7.2	14625	chr1:235095444:+	ONLY_REF_SPLICE	YES	188	0	0.24	1	0.3909	0.3909	IDH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr15:90626277-90645736:-,isocitrate_dehydrogenase_(NADP(+))_2,_mitochondrial,RP11-443B7.2->chr1:235092978-235095736:+	RMGI_OVARY	0.24	1	0.7818	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RNH1--DEAF1	16	73	RNH1	10330	chr11:497971:-	DEAF1	35030	chr11:646555:-	INCL_NON_REF_SPLICE	YES	403	41	0.18	0.68	0.2157	0.984	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RNH1->chr11:494512-507300:-,ribonuclease/angiogenin_inhibitor_1,DEAF1->DEAF1,_transcription_factor,chr11:644233-706715:-	RMGI_OVARY	0.18	0.68	1.1997	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	ZNF654--HMGB2	33	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4448	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RMGI_OVARY	1	1	0.4448	TRUE	0	0	0	518	0	FALSE	ACH-000719
RMGI_OVARY	MT-TC--MT-TY	32	1	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4313	0.0135	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	RMGI_OVARY	1	1	0.4448	FALSE	51	280	19	36	0	FALSE	ACH-000719
RMGI_OVARY	SHISA9--U91319.1	28	8	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	14	0	0.72	1	0.3774	0.1078	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	RMGI_OVARY	0.72	1	0.4852	FALSE	4	37	0	19	0	FALSE	ACH-000719
RMGI_OVARY	PPP1R18--RXFP1	29	2	PPP1R18	4488	chr6:30652185:-	RXFP1	11760	chr4:159343422:+	ONLY_REF_SPLICE	YES	8	0	0.79	1	0.3909	0.027	PPP1R18->chr6:30644166-30655672:-,protein_phosphatase_1_regulatory_subunit_18,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	RMGI_OVARY	0.79	1	0.4179	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MT-TA--MT-TN	19	37	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2561	0.4987	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RMGI_OVARY	1	1	0.7548	FALSE	369	2501	205	193	0	FALSE	ACH-000719
RMGI_OVARY	MT-TA--MT-TN	28	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3774	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RMGI_OVARY	1	1	0.3774	FALSE	369	2501	205	193	0	FALSE	ACH-000719
RMGI_OVARY	MT-ND6--MT-TE	26	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3504	0.0539	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RMGI_OVARY	1	1	0.4043	FALSE	499	1288	110	792	0	FALSE	ACH-000719
RMGI_OVARY	PAWR--RP1-78O14.1	24	10	PAWR	9188	chr12:80007355:-	RP1-78O14.1	32112	chr12:79735189:-	ONLY_REF_SPLICE	YES	185	0	0.16	1	0.3235	0.1348	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	RMGI_OVARY	0.16	1	0.4583	FALSE	0	1	0	1	0	FALSE	ACH-000719
RMGI_OVARY	RXFP1--LINC00243	3	93	RXFP1	18514	chr4:159549861:+	LINC00243	35747	chr6:30766549:-	ONLY_REF_SPLICE	YES	1251	9	0.07	0.91	0.0404	1.2535	RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1,LINC00243->chr6:30766431-30798436:-,long_intergenic_non-protein_coding_RNA_243	RMGI_OVARY	0.07	0.91	1.2939	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MT-TA--MT-TC	23	10	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.31	0.1348	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RMGI_OVARY	1	1	0.4448	FALSE	462	80	0	856	0	FALSE	ACH-000719
RMGI_OVARY	MT-TA--MT-TN	10	61	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1348	0.8222	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RMGI_OVARY	1	1	0.957	FALSE	369	2501	205	193	0	FALSE	ACH-000719
RMGI_OVARY	DCTN4--CTB-23I7.1	23	6	DCTN4	17098	chr5:150095127:-	CTB-23I7.1	32972	chr5:150746219:-	ONLY_REF_SPLICE	YES	50	0	0.37	1	0.31	0.0809	DCTN4->chr5:150088002-150138671:-,dynactin_subunit_4,CTB-23I7.1->chr5:150745994-150810913:-	RMGI_OVARY	0.37	1	0.3909	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	VCL--SEC24C	23	0	VCL	1053	chr10:75757924:+	SEC24C	34316	chr10:75519377:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.31	0	VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,SEC24C->SEC24_homolog_C,_COPII_coat_complex_component,chr10:75504120-75531919:+	RMGI_OVARY	1	1	0.31	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RP11-96H19.1--RP11-446N19.1	21	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	7	0	0.79	1	0.2831	0.0674	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RMGI_OVARY	0.79	1	0.3505	FALSE	515	4851	409	746	0	FALSE	ACH-000719
RMGI_OVARY	GDA--C10orf68	17	17	GDA	2545	chr9:74764598:+	C10orf68	39106	chr10:32912647:+	ONLY_REF_SPLICE	YES	237	3	0.13	0.92	0.2291	0.2291	GDA->chr9:74729511-74872109:+,guanine_deaminase,C10orf68->chr10:32832297-33171802:+	RMGI_OVARY	0.13	0.92	0.4582	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MT-ND6--MT-TE	15	22	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2022	0.2965	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RMGI_OVARY	0.97	1	0.4987	FALSE	499	1288	110	792	0	FALSE	ACH-000719
RMGI_OVARY	CLTC--RPS6KB1	1	75	CLTC	1316	chr17:57697534:+	RPS6KB1	42234	chr17:57990045:+	ONLY_REF_SPLICE	NO	220	20	0.26	0.79	0.0135	1.0109	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	RMGI_OVARY	0.26	0.79	1.0244	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MT-TA--MT-TN	6	55	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0809	0.7413	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RMGI_OVARY	1	1	0.8222	FALSE	369	2501	205	193	0	FALSE	ACH-000719
RMGI_OVARY	MT-TA--MT-TN	4	61	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0.8222	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RMGI_OVARY	1	1	0.8761	FALSE	369	2501	205	193	0	FALSE	ACH-000719
RMGI_OVARY	MT-TA--MT-TN	19	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2561	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RMGI_OVARY	1	1	0.2561	FALSE	369	2501	205	193	0	FALSE	ACH-000719
RMGI_OVARY	PAWR--RP1-78O14.1	1	70	PAWR	15902	chr12:79986391:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	82	0	0.46	1	0.0135	0.9435	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	RMGI_OVARY	0.46	1	0.957	FALSE	3	4	0	12	0	FALSE	ACH-000719
RMGI_OVARY	PSME4--ASB3	15	13	PSME4	1298	chr2:54197680:-	ASB3	59674	chr2:53943880:-	ONLY_REF_SPLICE	YES	15	23	0.65	0.55	0.2022	0.1752	NEIGHBORS[3907],PSME4->chr2:54091204-54197977:-,proteasome_activator_subunit_4,ASB3->ankyrin_repeat_and_SOCS_box_containing_3,chr2:53897430-54087297:-	RMGI_OVARY	0.55	0.65	0.3774	FALSE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	IGFBP7--MT-ND4L	18	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2426	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMGI_OVARY	1	1	0.2426	FALSE	1	0	0	30	0	FALSE	ACH-000719
RMGI_OVARY	RELB--PVRL2	13	13	RELB	2304	chr19:45506254:+	PVRL2	18656	chr19:45368528:+	ONLY_REF_SPLICE	YES	7	254	0.79	0.09	0.1752	0.1752	{Klijn_CCL:Ovary=1},RELB->Oncogene{Bushman},RELB_proto-oncogene,_NF-kB_subunit,chr19:45504688-45541452:+,PVRL2->chr19:45349432-45392485:+	RMGI_OVARY	0.09	0.79	0.3504	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MT-ATP6--MT-CO2	15	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	43	4	0.3	0.82	0.2022	0.0404	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RMGI_OVARY	0.3	0.82	0.2426	FALSE	59	21	0	114	0	FALSE	ACH-000719
RMGI_OVARY	GDA--C10orf68	12	13	GDA	2545	chr9:74764598:+	C10orf68	41354	chr10:32974898:+	ONLY_REF_SPLICE	YES	237	3	0.1	0.89	0.1617	0.1752	GDA->chr9:74729511-74872109:+,guanine_deaminase,C10orf68->chr10:32832297-33171802:+	RMGI_OVARY	0.1	0.89	0.3369	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	GDA--C10orf68	9	21	GDA	2545	chr9:74764598:+	C10orf68	38033	chr10:32873160:+	ONLY_REF_SPLICE	YES	237	0	0.11	1	0.1213	0.2831	GDA->chr9:74729511-74872109:+,guanine_deaminase,C10orf68->chr10:32832297-33171802:+	RMGI_OVARY	0.11	1	0.4044	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MT-TA--MT-TC	14	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1887	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RMGI_OVARY	1	1	0.1887	FALSE	462	80	0	856	0	FALSE	ACH-000719
RMGI_OVARY	EXT1--TSG101	13	3	EXT1	2769	chr8:119122324:-	TSG101	33699	chr11:18505619:-	ONLY_REF_SPLICE	YES	18	317	0.47	0.05	0.1752	0.0404	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101	RMGI_OVARY	0.05	0.47	0.2156	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	FGD4--DNM1L	12	6	FGD4	25777	chr12:32786623:+	DNM1L	39621	chr12:32854349:+	ONLY_REF_SPLICE	YES	0	28	1	0.39	0.1617	0.0809	NEIGHBORS[33150],FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,DNM1L->chr12:32832134-32898486:+,dynamin_1-like	RMGI_OVARY	0.39	1	0.2426	FALSE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	NCK2--TMEM131	12	5	NCK2	3175	chr2:106433070:+	TMEM131	17268	chr2:98504583:-	ONLY_REF_SPLICE	YES	20	3	0.46	0.85	0.1617	0.0674	NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+,TMEM131->chr2:98372799-98612388:-,transmembrane_protein_131	RMGI_OVARY	0.46	0.85	0.2291	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	IDH2--RP11-443B7.2	5	32	IDH2	1229	chr15:90645508:-	RP11-443B7.2	13495	chr1:235092978:+	ONLY_REF_SPLICE	YES	188	0	0.16	1	0.0674	0.4313	IDH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr15:90626277-90645736:-,isocitrate_dehydrogenase_(NADP(+))_2,_mitochondrial,RP11-443B7.2->chr1:235092978-235095736:+	RMGI_OVARY	0.16	1	0.4987	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MT-ND6--MT-TE	11	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1483	0.0539	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RMGI_OVARY	1	1	0.2022	FALSE	499	1288	110	792	0	FALSE	ACH-000719
RMGI_OVARY	MT-TA--MT-TC	7	18	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0944	0.2426	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RMGI_OVARY	1	1	0.337	FALSE	462	80	0	856	0	FALSE	ACH-000719
RMGI_OVARY	MT-ND6--MT-TE	4	29	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0539	0.3909	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RMGI_OVARY	0.97	1	0.4448	FALSE	499	1288	110	792	0	FALSE	ACH-000719
RMGI_OVARY	MT-TA--MT-TY	11	1	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1483	0.0135	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	RMGI_OVARY	1	1	0.1618	FALSE	13	214	14	42	0	FALSE	ACH-000719
RMGI_OVARY	FTH1--IGFBP1	10	4	FTH1	1246	chr11:61734887:-	IGFBP1	8331	chr7:45928111:+	INCL_NON_REF_SPLICE	YES	8564	7	0	0.67	0.1348	0.0539	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,IGFBP1->Oncogene{Bushman},chr7:45927956-45933267:+,insulin_like_growth_factor_binding_protein_1	RMGI_OVARY	0	0.67	0.1887	TRUE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	MT-ATP6--MT-CO2	10	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	43	3	0.23	0.81	0.1348	0.0404	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RMGI_OVARY	0.23	0.81	0.1752	FALSE	59	21	0	114	0	FALSE	ACH-000719
RMGI_OVARY	ZNF652--RP11-47L3.1	9	6	ZNF652	4847	chr17:47394188:-	RP11-47L3.1	21568	chr17:33650167:+	ONLY_REF_SPLICE	YES	4	0	0.79	1	0.1213	0.0809	ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652,RP11-47L3.1->chr17:33640521-33651919:+	RMGI_OVARY	0.79	1	0.2022	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MT-TA--MT-TN	10	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1348	0.0135	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RMGI_OVARY	1	1	0.1483	FALSE	369	2501	205	193	0	FALSE	ACH-000719
RMGI_OVARY	C10orf68--C9orf85	9	2	C10orf68	11981	chr10:32975008:+	C9orf85	42745	chr9:74597573:+	ONLY_REF_SPLICE	YES	9	9	0.55	0.55	0.1213	0.027	C10orf68->chr10:32832297-33171802:+,C9orf85->chr9:74526426-74600970:+,chromosome_9_open_reading_frame_85	RMGI_OVARY	0.55	0.55	0.1483	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MT-ND1--MT-TL1	8	6	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1078	0.0809	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	RMGI_OVARY	0.93	1	0.1887	FALSE	210	95	5	49	0	FALSE	ACH-000719
RMGI_OVARY	MT-TA--MT-TC	7	10	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0944	0.1348	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RMGI_OVARY	1	1	0.2292	FALSE	462	80	0	856	0	FALSE	ACH-000719
RMGI_OVARY	MT-ND1--MT-TL1	5	16	MT-ND1	1341	chrM:3647:+	MT-TL1	5012	chrM:3285:+	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0674	0.2157	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	RMGI_OVARY	0.88	1	0.2831	FALSE	210	95	5	49	0	FALSE	ACH-000719
RMGI_OVARY	MT-ND3--MT-ATP8	9	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1213	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RMGI_OVARY	1	1	0.1213	FALSE	351	233	23	137	0	FALSE	ACH-000719
RMGI_OVARY	PPP1R18--RXFP1	9	0	PPP1R18	4488	chr6:30652185:-	RXFP1	12859	chr4:159435997:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1213	0	PPP1R18->chr6:30644166-30655672:-,protein_phosphatase_1_regulatory_subunit_18,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	RMGI_OVARY	1	1	0.1213	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	TBC1D8--C12orf75	3	24	TBC1D8	6117	chr2:101767589:-	C12orf75	37042	chr12:105760395:+	ONLY_REF_SPLICE	YES	56	779	0.33	0.03	0.0404	0.3235	{Klijn_CCL:Ovary=1},TBC1D8->TBC1_domain_family_member_8,chr2:101624079-101869328:-,C12orf75->chr12:105629068-105789875:+,chromosome_12_open_reading_frame_75	RMGI_OVARY	0.03	0.33	0.3639	TRUE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	RP11-96H19.1--RP11-446N19.1	7	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0944	0.0944	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RMGI_OVARY	0.93	1	0.1888	FALSE	467	2173	244	435	0	FALSE	ACH-000719
RMGI_OVARY	GDA--C10orf68	3	22	GDA	2545	chr9:74764598:+	C10orf68	36969	chr10:32872096:+	INCL_NON_REF_SPLICE	YES	237	1	0.1	0.96	0.0404	0.2965	GDA->chr9:74729511-74872109:+,guanine_deaminase,C10orf68->chr10:32832297-33171802:+	RMGI_OVARY	0.1	0.96	0.3369	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	TBC1D8--C12orf75	1	30	TBC1D8	6117	chr2:101767589:-	C12orf75	36232	chr12:105759585:+	ONLY_REF_SPLICE	YES	56	728	0.36	0.04	0.0135	0.4044	{Klijn_CCL:Ovary=1},TBC1D8->TBC1_domain_family_member_8,chr2:101624079-101869328:-,C12orf75->chr12:105629068-105789875:+,chromosome_12_open_reading_frame_75	RMGI_OVARY	0.04	0.36	0.4179	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MT-TA--MT-TY	8	1	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1078	0.0135	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	RMGI_OVARY	1	1	0.1213	FALSE	13	214	14	42	0	FALSE	ACH-000719
RMGI_OVARY	MT-ND6--MT-TE	5	12	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0.1617	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RMGI_OVARY	1	1	0.2291	FALSE	499	1288	110	792	0	FALSE	ACH-000719
RMGI_OVARY	MT-TC--MT-TY	8	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1078	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	RMGI_OVARY	1	1	0.1078	FALSE	51	280	19	36	0	FALSE	ACH-000719
RMGI_OVARY	GDA--C10orf68	7	3	GDA	2545	chr9:74764598:+	C10orf68	44690	chr10:33000548:+	ONLY_REF_SPLICE	YES	237	9	0.04	0.53	0.0944	0.0404	GDA->chr9:74729511-74872109:+,guanine_deaminase,C10orf68->chr10:32832297-33171802:+	RMGI_OVARY	0.04	0.53	0.1348	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MT-TA--MT-TC	4	15	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0.2022	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RMGI_OVARY	1	1	0.2561	FALSE	462	80	0	856	0	FALSE	ACH-000719
RMGI_OVARY	MT-ATP6--MT-CO2	7	2	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	54	5	0.14	0.64	0.0944	0.027	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RMGI_OVARY	0.14	0.64	0.1214	FALSE	59	21	0	114	0	FALSE	ACH-000719
RMGI_OVARY	MT-TA--MT-TY	7	1	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0944	0.0135	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	RMGI_OVARY	1	1	0.1079	FALSE	13	214	14	42	0	FALSE	ACH-000719
RMGI_OVARY	ZNF652--RP11-47L3.1	7	1	ZNF652	4307	chr17:47394728:-	RP11-47L3.1	21568	chr17:33650167:+	ONLY_REF_SPLICE	YES	9	0	0.47	1	0.0944	0.0135	ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652,RP11-47L3.1->chr17:33640521-33651919:+	RMGI_OVARY	0.47	1	0.1079	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MT-TA--MT-TY	7	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0944	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	RMGI_OVARY	1	1	0.0944	FALSE	13	214	14	42	0	FALSE	ACH-000719
RMGI_OVARY	RP11-476K15.1--CTD-2015H3.2	6	4	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0809	0.0539	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	RMGI_OVARY	0.91	1	0.1348	FALSE	0	46	0	73	0	FALSE	ACH-000719
RMGI_OVARY	RP11-486O12.2--FTH1	5	8	RP11-486O12.2	1528	chr12:124069135:-	FTH1	7098	chr11:61734931:-	INCL_NON_REF_SPLICE	YES	3	6970	0.81	0	0.0674	0.1078	RP11-486O12.2->chr12:124066767-124069662:-,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	RMGI_OVARY	0	0.81	0.1752	TRUE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	SLC1A5--MT-ND4L	7	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0944	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMGI_OVARY	1	1	0.0944	FALSE	0	0	0	189	0	FALSE	ACH-000719
RMGI_OVARY	MT-ND1--MT-TL1	4	11	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0539	0.1483	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	RMGI_OVARY	0.88	1	0.2022	FALSE	210	95	5	49	0	FALSE	ACH-000719
RMGI_OVARY	RP11-123O10.4--GRIP1	6	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0809	0.0404	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RMGI_OVARY	1	1	0.1213	FALSE	416	2512	207	587	0	FALSE	ACH-000719
RMGI_OVARY	GDA--C10orf68	1	22	GDA	2545	chr9:74764598:+	C10orf68	36870	chr10:32871997:+	ONLY_REF_SPLICE	NO	237	0	0.09	1	0.0135	0.2965	GDA->chr9:74729511-74872109:+,guanine_deaminase,C10orf68->chr10:32832297-33171802:+	RMGI_OVARY	0.09	1	0.31	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MT-ATP6--MT-CO2	6	2	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	43	3	0.16	0.73	0.0809	0.027	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RMGI_OVARY	0.16	0.73	0.1079	FALSE	59	21	0	114	0	FALSE	ACH-000719
RMGI_OVARY	TBL1X--SHROOM2	6	2	TBL1X	6354	chrX:9608400:+	SHROOM2	41713	chrX:9907235:+	ONLY_REF_SPLICE	YES	0	51	1	0.14	0.0809	0.027	NEIGHBORS[66716],TBL1X->chrX:9431335-9687780:+,transducin_(beta)-like_1X-linked,SHROOM2->chrX:9754496-9917483:+,shroom_family_member_2	RMGI_OVARY	0.14	1	0.1079	FALSE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	MSI2--MRPS23	1	21	MSI2	18873	chr17:55484400:+	MRPS23	51602	chr17:55918621:-	ONLY_REF_SPLICE	YES	129	1373	0.15	0.02	0.0135	0.2831	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,MRPS23->chr17:55916842-55927417:-,mitochondrial_ribosomal_protein_S23	RMGI_OVARY	0.02	0.15	0.2966	TRUE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	TMEM131--NCK2	5	4	TMEM131	1450	chr2:98611939:-	NCK2	49406	chr2:106471504:+	ONLY_REF_SPLICE	YES	1	21	0.9	0.3	0.0674	0.0539	TMEM131->chr2:98372799-98612388:-,transmembrane_protein_131,NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+	RMGI_OVARY	0.3	0.9	0.1213	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	WTAPP1--RUVBL1	6	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0809	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	RMGI_OVARY	1	1	0.0809	TRUE	9	252	6	66	0	FALSE	ACH-000719
RMGI_OVARY	ZNF562--PIP5K1C	4	8	ZNF562	5947	chr19:9767223:-	PIP5K1C	25494	chr19:3648706:-	ONLY_REF_SPLICE	YES	9	10	0.57	0.55	0.0539	0.1078	ZNF562->chr19:9759330-9785776:-,zinc_finger_protein_562,PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma	RMGI_OVARY	0.55	0.57	0.1617	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RP11-486O12.2--FTH1	3	11	RP11-486O12.2	1546	chr12:124069117:-	FTH1	7098	chr11:61734931:-	INCL_NON_REF_SPLICE	NO	2	6970	0.88	0	0.0404	0.1483	RP11-486O12.2->chr12:124066767-124069662:-,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	RMGI_OVARY	0	0.88	0.1887	FALSE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	RP11-486O12.2--FTH1	3	11	RP11-486O12.2	1549	chr12:124069114:-	FTH1	7098	chr11:61734931:-	INCL_NON_REF_SPLICE	NO	1	6970	0.93	0	0.0404	0.1483	RP11-486O12.2->chr12:124066767-124069662:-,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	RMGI_OVARY	0	0.93	0.1887	FALSE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	MT-TA--MT-TC	3	10	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0404	0.1348	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RMGI_OVARY	1	1	0.1752	FALSE	462	80	0	856	0	FALSE	ACH-000719
RMGI_OVARY	FTH1--IGFBP1	5	1	FTH1	1168	chr11:61734965:-	IGFBP1	8310	chr7:45928090:+	INCL_NON_REF_SPLICE	YES	4953	4	0	0.6	0.0674	0.0135	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,IGFBP1->Oncogene{Bushman},chr7:45927956-45933267:+,insulin_like_growth_factor_binding_protein_1	RMGI_OVARY	0	0.6	0.0809	FALSE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	MT-ATP6--MT-CO2	5	1	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	31	3	0.16	0.67	0.0674	0.0135	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RMGI_OVARY	0.16	0.67	0.0809	FALSE	59	21	0	114	0	FALSE	ACH-000719
RMGI_OVARY	TMEM63A--LEFTY2	4	5	TMEM63A	16435	chr1:226046896:-	LEFTY2	29730	chr1:226128706:-	INCL_NON_REF_SPLICE	YES	28	2	0.24	0.82	0.0539	0.0674	LOCAL_REARRANGEMENT:-:[54229],TMEM63A->chr1:226033237-226070069:-,transmembrane_protein_63A,LEFTY2->chr1:226124298-226129189:-,left-right_determination_factor_2	RMGI_OVARY	0.24	0.82	0.1213	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	TRPC4AP--AVPI1	1	17	TRPC4AP	7955	chr20:33632308:-	AVPI1	26654	chr10:99437782:-	ONLY_REF_SPLICE	NO	83	215	0.18	0.08	0.0135	0.2291	TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,AVPI1->Oncogene{Bushman},arginine_vasopressin_induced_1,chr10:99437181-99447080:-	RMGI_OVARY	0.08	0.18	0.2426	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	BRI3BP--UBC	5	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0674	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	RMGI_OVARY	1	1	0.0674	TRUE	5	99	5	34	0	FALSE	ACH-000719
RMGI_OVARY	CTD-2374C24.1--RP11-6N13.1	5	0	CTD-2374C24.1	1068	chr5:104581998:-	RP11-6N13.1	12485	chr5:104222676:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0674	0	CTD-2374C24.1->chr5:104253193-104582065:-,RP11-6N13.1->chr5:103718999-104728671:-	RMGI_OVARY	1	1	0.0674	TRUE	0	2	0	1	2	TRUE	ACH-000719
RMGI_OVARY	MT-ND4--MT-ATP8	5	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RMGI_OVARY	1	1	0.0674	FALSE	231	205	14	283	0	FALSE	ACH-000719
RMGI_OVARY	MT-ND4--MT-ATP8	5	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RMGI_OVARY	1	1	0.0674	FALSE	230	193	14	283	0	FALSE	ACH-000719
RMGI_OVARY	PRKCE--AC073218.3	5	0	PRKCE	2104	chr2:45879587:+	AC073218.3	43266	chr2:34960174:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0674	0	PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,AC073218.3->chr2:34960042-34962185:-	RMGI_OVARY	1	1	0.0674	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RP11-486O12.2--FTH1	5	0	RP11-486O12.2	1335	chr12:124069328:-	FTH1	7036	chr11:61734993:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0	RP11-486O12.2->chr12:124066767-124069662:-,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	RMGI_OVARY	1	1	0.0674	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	TBC1D13--PPAPDC3	4	4	TBC1D13	5905	chr9:131554853:+	PPAPDC3	19760	chr9:134183310:+	ONLY_REF_SPLICE	YES	7	0	0.53	1	0.0539	0.0539	TBC1D13->TBC1_domain_family_member_13,chr9:131549483-131572711:+,PPAPDC3->chr9:134165081-134184649:+	RMGI_OVARY	0.53	1	0.1078	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	ZNF652--RP11-47L3.1	3	8	ZNF652	4847	chr17:47394188:-	RP11-47L3.1	20437	chr17:33648754:+	ONLY_REF_SPLICE	YES	4	0	0.73	1	0.0404	0.1078	ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652,RP11-47L3.1->chr17:33640521-33651919:+	RMGI_OVARY	0.73	1	0.1482	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MT-ATP6--MT-CO2	4	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	43	2	0.14	0.78	0.0539	0.0404	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RMGI_OVARY	0.14	0.78	0.0943	FALSE	59	21	0	114	0	FALSE	ACH-000719
RMGI_OVARY	RP11-486O12.2--IGFBP1	3	7	RP11-486O12.2	1561	chr12:124069102:-	IGFBP1	7028	chr7:45928087:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.71	0.0404	0.0944	RP11-486O12.2->chr12:124066767-124069662:-,IGFBP1->Oncogene{Bushman},chr7:45927956-45933267:+,insulin_like_growth_factor_binding_protein_1	RMGI_OVARY	0.71	1	0.1348	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RP11-304L19.5--ABCA3	4	2	RP11-304L19.5	1499	chr16:2204861:-	ABCA3	21884	chr16:2342239:-	INCL_NON_REF_SPLICE	YES	0	6	1	0.5	0.0539	0.027	RP11-304L19.5->chr16:2204798-2205359:-,ABCA3->ATP_binding_cassette_subfamily_A_member_3,Oncogene{Bushman},chr16:2325882-2390747:-	RMGI_OVARY	0.5	1	0.0809	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	ZNF652--RP11-47L3.1	4	2	ZNF652	4307	chr17:47394728:-	RP11-47L3.1	20437	chr17:33648754:+	ONLY_REF_SPLICE	YES	9	0	0.4	1	0.0539	0.027	ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652,RP11-47L3.1->chr17:33640521-33651919:+	RMGI_OVARY	0.4	1	0.0809	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	GDA--C10orf68	1	13	GDA	2545	chr9:74764598:+	C10orf68	40205	chr10:32964593:+	ONLY_REF_SPLICE	NO	237	3	0.06	0.82	0.0135	0.1752	GDA->chr9:74729511-74872109:+,guanine_deaminase,C10orf68->chr10:32832297-33171802:+	RMGI_OVARY	0.06	0.82	0.1887	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	MT-ATP6--MT-CO2	4	1	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	38	4	0.12	0.56	0.0539	0.0135	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RMGI_OVARY	0.12	0.56	0.0674	FALSE	59	21	0	114	0	FALSE	ACH-000719
RMGI_OVARY	FGD4--DNM1L	4	0	FGD4	1431	chr12:32552893:+	DNM1L	39621	chr12:32854349:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0539	0	NEIGHBORS[33150],FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,DNM1L->chr12:32832134-32898486:+,dynamin_1-like	RMGI_OVARY	1	1	0.0539	FALSE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	MT-TA--MT-TN	4	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RMGI_OVARY	1	1	0.0539	FALSE	369	2501	205	193	0	FALSE	ACH-000719
RMGI_OVARY	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RMGI_OVARY	1	1	0.0539	FALSE	369	2501	205	193	0	FALSE	ACH-000719
RMGI_OVARY	RP11-476K15.1--CTD-2015H3.2	3	4	RP11-476K15.1	3243	chr18:1626368:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0.0539	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	RMGI_OVARY	1	1	0.0943	FALSE	0	1	0	4	0	FALSE	ACH-000719
RMGI_OVARY	RP11-608O21.1--KANSL1	3	4	RP11-608O21.1	1217	chr4:19457275:+	KANSL1	16489	chr17:44172067:-	ONLY_REF_SPLICE	YES	0	30	1	0.19	0.0404	0.0539	RP11-608O21.1->chr4:19457059-19911315:+,KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-	RMGI_OVARY	0.19	1	0.0943	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RP11-96H19.1--RP11-446N19.1	2	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	7	0	0.59	1	0.027	0.1078	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RMGI_OVARY	0.59	1	0.1348	FALSE	275	511	55	178	0	FALSE	ACH-000719
RMGI_OVARY	MSI2--MRPS23	1	11	MSI2	17645	chr17:55478832:+	MRPS23	51810	chr17:55918413:-	ONLY_REF_SPLICE	YES	117	1328	0.09	0.01	0.0135	0.1483	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,MRPS23->chr17:55916842-55927417:-,mitochondrial_ribosomal_protein_S23	RMGI_OVARY	0.01	0.09	0.1618	TRUE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	RP11-486O12.2--IGFBP1	3	2	RP11-486O12.2	1531	chr12:124069132:-	IGFBP1	7139	chr7:45928198:+	INCL_NON_REF_SPLICE	YES	2	1038	0.71	0	0.0404	0.027	RP11-486O12.2->chr12:124066767-124069662:-,IGFBP1->Oncogene{Bushman},chr7:45927956-45933267:+,insulin_like_growth_factor_binding_protein_1	RMGI_OVARY	0	0.71	0.0674	FALSE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.92	1	0.0135	0.1348	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RMGI_OVARY	0.92	1	0.1483	FALSE	192	492	57	212	0	FALSE	ACH-000719
RMGI_OVARY	MT-TA--MT-TN	3	1	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0.0135	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RMGI_OVARY	1	1	0.0539	FALSE	369	2501	205	193	0	FALSE	ACH-000719
RMGI_OVARY	MT-TA--MT-TY	3	1	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0.0135	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	RMGI_OVARY	1	1	0.0539	FALSE	13	214	14	42	0	FALSE	ACH-000719
RMGI_OVARY	PAWR--RP1-78O14.1	1	9	PAWR	2369	chr12:80083509:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	89	0	0.1	1	0.0135	0.1213	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	RMGI_OVARY	0.1	1	0.1348	FALSE	0	7	0	7	0	FALSE	ACH-000719
RMGI_OVARY	IGFBP7--MT-ND4L	3	0	IGFBP7	1091	chr4:57976461:-	MT-ND4L	10273	chrM:10467:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RMGI_OVARY	1	1	0.0404	FALSE	1	0	0	30	0	FALSE	ACH-000719
RMGI_OVARY	MSI2--MRPS23	1	8	MSI2	5660	chr17:55339553:+	MRPS23	51602	chr17:55918621:-	ONLY_REF_SPLICE	YES	181	1373	0.05	0.01	0.0135	0.1078	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,MRPS23->chr17:55916842-55927417:-,mitochondrial_ribosomal_protein_S23	RMGI_OVARY	0.01	0.05	0.1213	TRUE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	MT-ND4--MT-ATP8	3	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RMGI_OVARY	1	1	0.0404	FALSE	230	198	14	283	0	FALSE	ACH-000719
RMGI_OVARY	MT-ND4--MT-ATP8	3	0	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RMGI_OVARY	1	1	0.0404	FALSE	231	217	16	283	0	FALSE	ACH-000719
RMGI_OVARY	MT-ND4--MT-ATP8	3	0	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RMGI_OVARY	1	1	0.0404	FALSE	231	217	16	283	0	FALSE	ACH-000719
RMGI_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RMGI_OVARY	1	1	0.0404	FALSE	499	1288	110	792	0	FALSE	ACH-000719
RMGI_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RMGI_OVARY	1	1	0.0404	FALSE	499	1288	110	792	0	FALSE	ACH-000719
RMGI_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RMGI_OVARY	1	1	0.0404	FALSE	499	1288	110	792	0	FALSE	ACH-000719
RMGI_OVARY	MT-TC--MT-TY	3	0	MT-TC	1059	chrM:5768:-	MT-TY	4111	chrM:5847:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	RMGI_OVARY	1	1	0.0404	FALSE	51	280	19	36	0	FALSE	ACH-000719
RMGI_OVARY	MT-TC--MT-TY	3	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	RMGI_OVARY	1	1	0.0404	FALSE	51	280	19	36	0	FALSE	ACH-000719
RMGI_OVARY	RP11-476K15.1--CTD-2015H3.2	2	4	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.027	0.0539	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	RMGI_OVARY	0.86	1	0.0809	FALSE	0	46	0	73	0	FALSE	ACH-000719
RMGI_OVARY	SHISA9--U91319.1	1	8	SHISA9	9974	chr16:13297406:+	U91319.1	21484	chr16:13352190:+	ONLY_REF_SPLICE	NO	14	0	0.39	1	0.0135	0.1078	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	RMGI_OVARY	0.39	1	0.1213	FALSE	0	14	0	12	0	FALSE	ACH-000719
RMGI_OVARY	ZNF562--PIP5K1C	1	8	ZNF562	5947	chr19:9767223:-	PIP5K1C	26578	chr19:3647384:-	ONLY_REF_SPLICE	NO	9	18	0.5	0.33	0.0135	0.1078	ZNF562->chr19:9759330-9785776:-,zinc_finger_protein_562,PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma	RMGI_OVARY	0.33	0.5	0.1213	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	BCL3--RXFP1	2	2	BCL3	8189	chr19:45262098:+	RXFP1	14652	chr4:159435997:+	ONLY_REF_SPLICE	YES	2546	1	0	0.8	0.027	0.027	BCL3->B-cell_CLL/lymphoma_3,Oncogene{Bushman},chr19:45250962-45263301:+,RXFP1->chr4:159236463-159574524:+,relaxin/insulin_like_family_peptide_receptor_1	RMGI_OVARY	0	0.8	0.054	FALSE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	RP11-703M24.5--MYOM1	2	2	RP11-703M24.5	1450	chr18:2832614:-	MYOM1	18842	chr18:3164437:-	ONLY_REF_SPLICE	YES	1	6	0.8	0.4	0.027	0.027	RP11-703M24.5->chr18:2688562-2833063:-,MYOM1->chr18:3066805-3220106:-,myomesin_1	RMGI_OVARY	0.4	0.8	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	BLVRB--TPT1-AS1	2	1	BLVRB	1231	chr19:40971517:-	TPT1-AS1	14811	chr13:45944094:+	ONLY_REF_SPLICE	YES	1068	10	0	0.23	0.027	0.0135	BLVRB->biliverdin_reductase_B,chr19:40953696-40971747:-,TPT1-AS1->TPT1_antisense_RNA_1,chr13:45915480-45965872:+	RMGI_OVARY	0	0.23	0.0405	FALSE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	DCTN4--CTB-23I7.1	1	5	DCTN4	16000	chr5:150097838:-	CTB-23I7.1	32972	chr5:150746219:-	ONLY_REF_SPLICE	YES	57	0	0.1	1	0.0135	0.0674	DCTN4->chr5:150088002-150138671:-,dynactin_subunit_4,CTB-23I7.1->chr5:150745994-150810913:-	RMGI_OVARY	0.1	1	0.0809	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	PSME4--ASB3	1	5	PSME4	1298	chr2:54197680:-	ASB3	60852	chr2:53941718:-	ONLY_REF_SPLICE	NO	15	21	0.29	0.22	0.0135	0.0674	NEIGHBORS[3907],PSME4->chr2:54091204-54197977:-,proteasome_activator_subunit_4,ASB3->ankyrin_repeat_and_SOCS_box_containing_3,chr2:53897430-54087297:-	RMGI_OVARY	0.22	0.29	0.0809	FALSE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	CTD-2374C24.1--RP11-6N13.1	2	0	CTD-2374C24.1	4423	chr5:104311375:-	RP11-6N13.1	12485	chr5:104222676:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	CTD-2374C24.1->chr5:104253193-104582065:-,RP11-6N13.1->chr5:103718999-104728671:-	RMGI_OVARY	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	GUK1--ARF1	2	0	GUK1	1402	chr1:228328064:+	ARF1	16756	chr1:228284779:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:7=pct:5.3],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6]},GTEx_v2:{count=7;pct=0.08%;dist=Whole_Blood=6,Esophagus_-_Gastroesophageal_Junction=1},LOCAL_REARRANGEMENT:+:[40751],GUK1->chr1:228327663-228336685:+,guanylate_kinase_1,ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+	RMGI_OVARY	1	1	0.027	TRUE	16	1	0	2	0	FALSE	ACH-000719
RMGI_OVARY	PRKCE--AC073218.3	2	0	PRKCE	5402	chr2:45905055:+	AC073218.3	43266	chr2:34960174:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,AC073218.3->chr2:34960042-34962185:-	RMGI_OVARY	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	PRKCE--AC073218.3	2	0	PRKCE	10365	chr2:45928630:+	AC073218.3	43266	chr2:34960174:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,AC073218.3->chr2:34960042-34962185:-	RMGI_OVARY	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	RP11-440L14.1--CTBP1	2	0	RP11-440L14.1	1078	chr4:775560:-	CTBP1	11273	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	RP11-440L14.1->chr4:756175-775637:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	RMGI_OVARY	1	1	0.027	TRUE	0	2	0	7	2	TRUE	ACH-000719
RMGI_OVARY	TMEM63A--LEFTY2	2	0	TMEM63A	13413	chr1:226049918:-	LEFTY2	30734	chr1:226127702:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	LOCAL_REARRANGEMENT:-:[54229],TMEM63A->chr1:226033237-226070069:-,transmembrane_protein_63A,LEFTY2->chr1:226124298-226129189:-,left-right_determination_factor_2	RMGI_OVARY	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	ZNF562--PIP5K1C	2	0	ZNF562	1086	chr19:9785691:-	PIP5K1C	25494	chr19:3648706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	ZNF562->chr19:9759330-9785776:-,zinc_finger_protein_562,PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma	RMGI_OVARY	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	ZNF562--PIP5K1C	1	4	ZNF562	4840	chr19:9768685:-	PIP5K1C	25494	chr19:3648706:-	ONLY_REF_SPLICE	YES	9	10	0.36	0.33	0.0135	0.0539	ZNF562->chr19:9759330-9785776:-,zinc_finger_protein_562,PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma	RMGI_OVARY	0.33	0.36	0.0674	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	SHISA9--U91319.1	1	3	SHISA9	7683	chr16:13010672:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	NO	31	0	0.11	1	0.0135	0.0404	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	RMGI_OVARY	0.11	1	0.0539	FALSE	2	8	0	8	0	FALSE	ACH-000719
RMGI_OVARY	ARHGEF10L--UNC13D	1	2	ARHGEF10L	26121	chr1:17966797:+	UNC13D	41165	chr17:73840452:-	ONLY_REF_SPLICE	NO	23	61	0.12	0.05	0.0135	0.027	ARHGEF10L->Rho_guanine_nucleotide_exchange_factor_10_like,chr1:17866330-18024369:+,UNC13D->chr17:73823306-73840798:-,unc-13_homolog_D	RMGI_OVARY	0.05	0.12	0.0405	TRUE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	PAWR--RP1-78O14.1	1	2	PAWR	2369	chr12:80083509:-	RP1-78O14.1	32112	chr12:79735189:-	ONLY_REF_SPLICE	NO	89	0	0.03	1	0.0135	0.027	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	RMGI_OVARY	0.03	1	0.0405	FALSE	0	2	0	3	0	FALSE	ACH-000719
RMGI_OVARY	RP11-304L19.5--ABCA3	1	2	RP11-304L19.5	1216	chr16:2205144:-	ABCA3	21884	chr16:2342239:-	ONLY_REF_SPLICE	YES	40	6	0.07	0.33	0.0135	0.027	RP11-304L19.5->chr16:2204798-2205359:-,ABCA3->ATP_binding_cassette_subfamily_A_member_3,Oncogene{Bushman},chr16:2325882-2390747:-	RMGI_OVARY	0.07	0.33	0.0405	TRUE	0	0	0	1	0	TRUE	ACH-000719
RMGI_OVARY	GDA--C10orf68	1	1	GDA	2545	chr9:74764598:+	C10orf68	45801	chr10:33015662:+	ONLY_REF_SPLICE	YES	237	7	0.01	0.22	0.0135	0.0135	GDA->chr9:74729511-74872109:+,guanine_deaminase,C10orf68->chr10:32832297-33171802:+	RMGI_OVARY	0.01	0.22	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000719
RMGI_OVARY	HOXB3--GNAS	1	1	HOXB3	2581	chr17:46667487:-	GNAS	36488	chr20:57470667:+	ONLY_REF_SPLICE	YES	40	535	0.05	0	0.0135	0.0135	HOXB3->chr17:46626232-46682274:-,homeobox_B3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	RMGI_OVARY	0	0.05	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000719
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	313	0	RPL14	4483	chr3:40503515:+	AC005540.3	8966	chr2:191745649:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	4.821	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	4.821	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBG1--HBA2	145	32	HBG1	1525	chr11:5270598:-	HBA2	6436	chr16:223471:+	ONLY_REF_SPLICE	YES	8712	17113	0.02	0.01	2.2334	0.4929	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,PROTCLUST,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	2.7263	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	84	68	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	39	7	0.8	0.96	1.2938	1.0474	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.96	2.3412	TRUE	0	2	1	16	2	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBA2--HBG1	88	37	HBA2	1483	chr16:223328:+	HBG1	6270	chr11:5269717:-	ONLY_REF_SPLICE	YES	17918	7619	0.01	0.02	1.3554	0.5699	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,PROTCLUST,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	1.9253	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	79	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	1.2168	0.2926	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	1.5094	TRUE	508	994	45	981	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	61	0	RPL14	4486	chr3:40503518:+	AC005540.3	8972	chr2:191745643:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9395	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9395	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	54	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	172	5	0.25	0.92	0.8317	0.0308	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.92	0.8625	TRUE	519	3926	326	965	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBG1--HBA2	42	27	HBG1	2418	chr11:5269705:-	HBA2	6452	chr16:223487:+	INCL_NON_REF_SPLICE	YES	6580	15102	0.01	0	0.6469	0.4159	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,PROTCLUST,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	1.0628	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	41	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6315	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6315	TRUE	0	0	0	518	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	33	0	RPL14	4486	chr3:40503518:+	AC005540.3	8975	chr2:191745640:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5083	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5083	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBG1--HBA2	27	21	HBG1	1411	chr11:5270712:-	HBA2	6180	chr16:223215:+	INCL_NON_REF_SPLICE	YES	16750	18468	0	0	0.4159	0.3235	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,PROTCLUST,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.7394	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	29	11	ABL1	1510	chr9:133589842:+	BCR	40306	chr22:23632526:+	ONLY_REF_SPLICE	YES	2	38	0.95	0.51	0.4467	0.1694	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.95	0.6161	TRUE	0	0	0	6	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBG1--HBA2	21	32	HBG1	1504	chr11:5270619:-	HBA2	6273	chr16:223308:+	INCL_NON_REF_SPLICE	YES	10366	17796	0.01	0	0.3235	0.4929	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,PROTCLUST,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.8164	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBA2--HBG1	19	27	HBA2	1451	chr16:223296:+	HBG1	5358	chr11:5270629:-	INCL_NON_REF_SPLICE	YES	18437	11794	0	0	0.2926	0.4159	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,PROTCLUST,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.7085	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBA2--HBG1	17	29	HBA2	1641	chr16:223486:+	HBG1	6283	chr11:5269704:-	INCL_NON_REF_SPLICE	YES	15090	6510	0	0.01	0.2618	0.4467	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,PROTCLUST,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.7085	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBG1--HBA2	14	38	HBG1	2430	chr11:5269693:-	HBA2	6464	chr16:223499:+	INCL_NON_REF_SPLICE	YES	6397	13696	0.01	0	0.2156	0.5853	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,PROTCLUST,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.8009	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBA2--HBG1	16	26	HBA2	1432	chr16:223277:+	HBG1	5339	chr11:5270648:-	INCL_NON_REF_SPLICE	YES	18818	13963	0	0	0.2464	0.4005	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,PROTCLUST,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.6469	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	2	66	BCR	20761	chr22:23631808:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	39	7	0.64	0.91	0.0308	1.0166	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.91	1.0474	TRUE	0	2	1	16	2	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBG1--HBA2	11	28	HBG1	1483	chr11:5270640:-	HBA2	6252	chr16:223287:+	INCL_NON_REF_SPLICE	YES	13029	18918	0	0	0.1694	0.4313	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,PROTCLUST,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.6007	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBA2--HBG1	9	30	HBA2	1441	chr16:223286:+	HBG1	5348	chr11:5270639:-	INCL_NON_REF_SPLICE	YES	18886	12896	0	0	0.1386	0.4621	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,PROTCLUST,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.6007	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBA2--HBG1	10	25	HBA2	1369	chr16:223214:+	HBG1	5276	chr11:5270711:-	INCL_NON_REF_SPLICE	YES	18344	16663	0	0	0.154	0.3851	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,PROTCLUST,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.5391	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBG1--HBA2	7	30	HBG1	1493	chr11:5270630:-	HBA2	6262	chr16:223297:+	INCL_NON_REF_SPLICE	YES	12029	18392	0	0	0.1078	0.4621	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,PROTCLUST,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.5699	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBA2--HBG1	12	5	HBA2	1688	chr16:223533:+	HBG1	6333	chr11:5269654:-	INCL_NON_REF_SPLICE	YES	10166	4498	0	0	0.1848	0.077	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,PROTCLUST,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.2618	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBG1--HBA2	6	27	HBG1	2456	chr11:5269667:-	HBA2	6487	chr16:223522:+	INCL_NON_REF_SPLICE	YES	5396	10923	0.01	0	0.0924	0.4159	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,PROTCLUST,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.5083	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	11	0	RPL14	4487	chr3:40503519:+	AC005540.3	8967	chr2:191745648:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1694	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1694	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.154	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.154	FALSE	499	1288	110	792	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	10	0	RPL14	4485	chr3:40503517:+	AC005540.3	8959	chr2:191745656:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.154	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.154	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	9	0	RPL14	4476	chr3:40503508:+	AC005540.3	8959	chr2:191745656:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1386	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1386	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBG1--HBA2	4	17	HBG1	2467	chr11:5269656:-	HBA2	6498	chr16:223533:+	INCL_NON_REF_SPLICE	YES	4610	10249	0	0	0.0616	0.2618	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,PROTCLUST,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.3234	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	8	0	RPL14	4495	chr3:40503527:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1232	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1232	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	8	0	RPL14	4492	chr3:40503524:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1232	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1232	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1078	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1078	FALSE	13	9	0	364	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1078	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1078	FALSE	499	1288	110	792	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	7	0	RPL14	4498	chr3:40503530:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1078	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1078	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	48	9	0.2	0.57	0.077	0.1078	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.57	0.1848	TRUE	267	562	48	632	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	48	9	0.17	0.53	0.077	0.077	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.53	0.154	TRUE	267	562	48	632	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LAMTOR5-AS1--HBA2	6	0	LAMTOR5-AS1	2330	chr1:110950294:+	HBA2	18588	chr16:223141:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0924	0	LAMTOR5-AS1->LAMTOR5_antisense_RNA_1,chr1:110925441-110974982:+,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0924	TRUE	1	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0924	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0924	FALSE	499	1288	110	792	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0924	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0924	FALSE	499	1288	110	792	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HBG1--HBA2	4	4	HBG1	1411	chr11:5270712:-	HBA2	6541	chr16:223576:+	INCL_NON_REF_SPLICE	YES	16750	4282	0	0	0.0616	0.0616	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,PROTCLUST,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1,HBA2->chr16:222846-223709:+,hemoglobin_subunit_alpha_2	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1232	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	0	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.077	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.077	FALSE	499	1288	110	792	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	5	0	RPL14	4486	chr3:40503518:+	AC005540.3	8978	chr2:191745637:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.077	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.077	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	4	0	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0616	0	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0616	TRUE	0	2	0	11	2	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1134	chrM:14540:-	MT-TE	4503	chrM:14765:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0616	FALSE	499	1288	110	792	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	4	0	RPL14	4501	chr3:40503533:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0616	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BSG--TCF3	3	0	BSG	2405	chr19:572701:+	TCF3	17968	chr19:1632404:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0462	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0462	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0462	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0462	FALSE	16	356	14	466	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	3	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0462	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0462	FALSE	46	201	11	112	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	12139	chr16:85689949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0462	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0462	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL14--AC005540.3	3	0	RPL14	4507	chr3:40503539:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0462	TRUE	1	3	0	5	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--CNN2	2	1	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	69	321	0.04	0.01	0.0308	0.0154	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0462	FALSE	35	34	3	30	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABCC4--SOS1	2	0	ABCC4	14477	chr13:95838955:-	SOS1	52253	chr2:39261999:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	ABCC4->ATP_binding_cassette_subfamily_C_member_4,chr13:95672083-95953687:-,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKZF1--PSME4	2	0	ANKZF1	1649	chr2:220095127:+	PSME4	54823	chr2:54096675:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	ANKZF1->ankyrin_repeat_and_zinc_finger_domain_containing_1,chr2:220094479-220101391:+,PSME4->chr2:54091204-54197977:-,proteasome_activator_subunit_4	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BSG--SBNO2	2	0	BSG	2405	chr19:572701:+	SBNO2	21547	chr19:1127764:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf63--TAL1	2	0	C1orf63	8720	chr1:25594231:-	TAL1	22422	chr1:47695023:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,TAL1->Oncogene{Bushman},T-cell_acute_lymphocytic_leukemia_1,chr1:47681962-47697892:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-260E6.6--DNAJB4	2	0	CTC-260E6.6	12150	chr19:20261170:-	DNAJB4	23394	chr1:78478735:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	CTC-260E6.6->chr19:20236186-20432114:-,DNAJB4->DnaJ_heat_shock_protein_family_(Hsp40)_member_B4,chr1:78444859-78483648:+	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-435M10.3--PHF13	2	0	CTC-435M10.3	1350	chr19:41857107:+	PHF13	15323	chr1:6676817:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	CTC-435M10.3->chr19:41856758-41930906:+,PHF13->PHD_finger_protein_13,chr1:6673745-6684093:+	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GMEB1--HP1BP3	2	0	GMEB1	6785	chr1:29023596:+	HP1BP3	26468	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	GMEB1->chr1:28995244-29045865:+,glucocorticoid_modulatory_element_binding_protein_1,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM5--LRBA	2	0	RBM5	5377	chr3:50131308:+	LRBA	67903	chr4:151604869:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+,LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-977B1.7--CARS2	2	0	RP5-977B1.7	2583	chr20:35199844:-	CARS2	19274	chr13:111357918:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	RP5-977B1.7->chr20:35136563-35201794:-,CARS2->chr13:111293759-111365950:-,cysteinyl-tRNA_synthetase_2,_mitochondrial_(putative)	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	2	CCDC26	2447	chr8:130587128:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0154	0.0308	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0462	TRUE	0	3	0	7	3	TRUE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACSL4--TMEM164	1	1	ACSL4	17382	chrX:108902583:-	TMEM164	31654	chrX:109310575:+	ONLY_REF_SPLICE	YES	100	71	0.02	0.03	0.0154	0.0154	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=2},ACSL4->acyl-CoA_synthetase_long-chain_family_member_4,chrX:108867473-108976632:-,TMEM164->chrX:109245859-109425962:+,transmembrane_protein_164	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0308	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASAH1--VCP	1	1	ASAH1	3733	chr8:17933050:-	VCP	30692	chr9:35059798:-	ONLY_REF_SPLICE	YES	1985	578	0	0	0.0154	0.0154	GTEx&tcga_normals:1/3694=0.03%,ASAH1->N-acylsphingosine_amidohydrolase_(acid_ceramidase)_1,chr8:17913934-17942494:-,VCP->chr9:35056061-35073246:-,valosin_containing_protein	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0308	FALSE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BSG--TCF3	1	1	BSG	2405	chr19:572701:+	TCF3	15784	chr19:1650286:-	ONLY_REF_SPLICE	YES	361	11	0.01	0.15	0.0154	0.0154	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.15	0.0308	FALSE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CACNA2D3--PCSK7	1	1	CACNA2D3	30448	chr3:54933895:+	PCSK7	56860	chr11:117090474:-	ONLY_REF_SPLICE	NO	1	180	0.67	0.01	0.0154	0.0154	CACNA2D3->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_3,chr3:54156574-55108584:+,PCSK7->Oncogene{Bushman},chr11:117075053-117103241:-,proprotein_convertase_subtilisin/kexin_type_7	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.67	0.0308	FALSE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EGFL7--NOC4L	1	1	EGFL7	4568	chr9:139559237:+	NOC4L	19634	chr12:132635526:+	ONLY_REF_SPLICE	YES	1240	33	0	0.06	0.0154	0.0154	GTEx_FI:{Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6]},GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},EGFL7->EGF_like_domain_multiple_7,chr9:139553308-139567130:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.0308	FALSE	2	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PANK4--SKI	1	1	PANK4	1137	chr1:2457903:-	SKI	22492	chr1:2234417:+	ONLY_REF_SPLICE	NO	14	34	0.12	0.06	0.0154	0.0154	GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PANK4->chr1:2439972-2458039:-,pantothenate_kinase_4,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.12	0.0308	TRUE	1	1	0	4	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0154	0.0154	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0308	TRUE	458	1351	185	561	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0154	0.0154	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	FALSE	76	45	6	15	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0154	0.0154	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0308	FALSE	515	4851	409	746	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLN1--EEF1G	1	1	TLN1	20996	chr9:35705747:-	EEF1G	35582	chr11:62335000:-	ONLY_REF_SPLICE	YES	628	6325	0	0	0.0154	0.0154	TLN1->chr9:35696945-35732392:-,talin_1,EEF1G->chr11:62327073-62342401:-,eukaryotic_translation_elongation_factor_1_gamma	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0308	FALSE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM13--KPNA3	1	1	TRIM13	2876	chr13:50571899:+	KPNA3	17260	chr13:50321129:-	ONLY_REF_SPLICE	NO	74	39	0.03	0.05	0.0154	0.0154	TRIM13->chr13:50570024-50594617:+,tripartite_motif_containing_13,KPNA3->chr13:50273447-50367057:-,karyopherin_subunit_alpha_3	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.05	0.0308	TRUE	0	0	0	1	0	FALSE	ACH-000241
JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP24--SPTA1	1	1	USP24	31909	chr1:55586269:-	SPTA1	114085	chr1:158584096:-	ONLY_REF_SPLICE	YES	91	868	0.02	0	0.0154	0.0154	USP24->Oncogene{Bushman},chr1:55532032-55680786:-,ubiquitin_specific_peptidase_24,SPTA1->ArcherDX_panel,FoundationOne_panel,chr1:158580496-158656488:-,spectrin_alpha,_erythrocytic_1	JK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0308	FALSE	0	0	0	1	0	FALSE	ACH-000241
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKJ4--IGL@	4239	0	IGKJ4	1037	chr2:89160398:-	IGL@	68656	chr22:23248512:+	ONLY_REF_SPLICE	YES	0	0	1	1	57.5843	0	GTEx_FI:{Colon=[count:3=pct:1.6],Blood=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6]},IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4,IGL@->Oncogene{Bushman}	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	57.5843	FALSE	9	17	1	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKJ4--IGL@	3287	0	IGKJ4	1037	chr2:89160398:-	IGL@	66018	chr22:23243156:+	ONLY_REF_SPLICE	YES	0	0	1	1	44.652	0	GTEx_FI:{Colon=[count:3=pct:1.6],Blood=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6]},IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4,IGL@->Oncogene{Bushman}	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	44.652	FALSE	9	17	1	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS6--RASA3	699	291	GAS6	13349	chr13:114529969:-	RASA3	44356	chr13:114751269:-	ONLY_REF_SPLICE	YES	811	34	0.55	0.97	9.4955	3.9531	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.97	13.4486	TRUE	0	2	1	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGAT5--IGL@	83	19	MGAT5	1309	chr2:134877862:+	IGL@	100008	chr22:23264894:+	INCL_NON_REF_SPLICE	YES	4	31	0.96	0.77	1.1275	0.2581	MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,IGL@->Oncogene{Bushman}	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.96	1.3856	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	65	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.883	0.3532	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2362	TRUE	508	994	45	981	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--IGL@	55	43	PVT1	1202	chr8:128806980:+	IGL@	98881	chr22:23264894:+	INCL_NON_REF_SPLICE	YES	138	31	0.42	0.76	0.7471	0.5841	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,IGL@->Oncogene{Bushman}	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.76	1.3312	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	60	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8151	0.0815	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8966	FALSE	462	80	0	856	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	47	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	135	3	0.27	0.94	0.6385	0.0272	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.94	0.6657	TRUE	519	3926	326	965	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FCHSD2--CARNS1	36	30	FCHSD2	10623	chr11:72695133:-	CARNS1	28907	chr11:67182839:+	ONLY_REF_SPLICE	YES	42	1	0.61	0.99	0.489	0.4075	{Klijn_CCL:Lymphoid=1},FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.99	0.8965	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-344E13.3--UBBP4	24	65	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	3	0	0.97	1	0.326	0.883	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	1.209	TRUE	23	13	0	54	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSPAN4--TALDO1	30	7	TSPAN4	3911	chr11:847300:+	TALDO1	17885	chr11:755879:+	ONLY_REF_SPLICE	YES	109	935	0.25	0.04	0.4075	0.0951	LOCAL_REARRANGEMENT:+:[77784],TSPAN4->chr11:842808-867116:+,tetraspanin_4,TALDO1->chr11:747329-765024:+,transaldolase_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.25	0.5026	TRUE	0	1	0	1	1	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	28	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	1	0.9	0.97	0.3804	0.1358	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.97	0.5162	FALSE	515	4851	409	746	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	30	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4075	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4075	TRUE	0	0	0	518	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	29	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3939	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3939	FALSE	369	2501	205	193	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAH10--TCTN2	24	9	DNAH10	15813	chr12:124283918:+	TCTN2	100668	chr12:124189079:+	ONLY_REF_SPLICE	YES	0	3	1	0.92	0.326	0.1223	LOCAL_REARRANGEMENT:+:[54094],DNAH10->chr12:124247042-124420753:+,dynein_axonemal_heavy_chain_10,TCTN2->chr12:124155660-124192948:+,tectonic_family_member_2	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.4483	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	24	7	MT-TA	1053	chrM:5603:-	MT-TC	4081	chrM:5815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.326	0.0951	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4211	FALSE	462	80	0	856	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	24	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.326	0.0543	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.3803	FALSE	499	1288	110	792	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	11	50	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1494	0.6792	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8286	FALSE	369	2501	205	193	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	18	16	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.2445	0.2174	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.4619	FALSE	467	2173	244	435	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FCHSD2--CARNS1	17	15	FCHSD2	10623	chr11:72695133:-	CARNS1	33026	chr11:67186958:+	ONLY_REF_SPLICE	YES	42	29	0.43	0.52	0.2309	0.2038	{Klijn_CCL:Lymphoid=1},FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.52	0.4347	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	20	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2717	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2717	FALSE	230	193	14	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM63A--MAGI1	18	0	TMEM63A	24624	chr1:226034859:-	MAGI1	50623	chr3:65425585:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2445	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Small_Intestine=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=20;pct=0.23%;dist=Pancreas=2,Adipose_-_Subcutaneous=2,Colon_-_Transverse=2,Stomach=1,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Ovary=1,Lung=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Uterus=1,Nerve_-_Tibial=1,Esophagus_-_Muscularis=1,Spleen=1},TMEM63A->chr1:226033237-226070069:-,transmembrane_protein_63A,MAGI1->chr3:65339200-66024509:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2445	TRUE	2	0	0	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ME1--PGM3	16	5	ME1	3486	chr6:84108086:-	PGM3	40891	chr6:83870961:-	ONLY_REF_SPLICE	YES	65	0	0.24	1	0.2174	0.0679	NEIGHBORS[16453],ME1->chr6:83920108-84140797:-,malic_enzyme_1,PGM3->chr6:83870869-83903655:-,phosphoglucomutase_3	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.2853	FALSE	0	0	0	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	16	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	34	0	0.35	1	0.2174	0.0272	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	1	0.2446	TRUE	0	42	0	133	42	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGAT5--IGL@	11	19	MGAT5	1309	chr2:134877862:+	IGL@	89052	chr22:23237683:+	INCL_NON_REF_SPLICE	YES	4	3159	0.88	0.01	0.1494	0.2581	MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,IGL@->Oncogene{Bushman}	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.88	0.4075	TRUE	0	0	0	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ME1--PGM3	12	13	ME1	3486	chr6:84108086:-	PGM3	38297	chr6:83876185:-	ONLY_REF_SPLICE	YES	65	6	0.28	0.81	0.163	0.1766	NEIGHBORS[16453],ME1->chr6:83920108-84140797:-,malic_enzyme_1,PGM3->chr6:83870869-83903655:-,phosphoglucomutase_3	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.81	0.3396	FALSE	0	0	0	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--IGL@	4	45	PVT1	1202	chr8:128806980:+	IGL@	87925	chr22:23237683:+	INCL_NON_REF_SPLICE	NO	138	3159	0.26	0.02	0.0543	0.6113	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,IGL@->Oncogene{Bushman}	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.26	0.6656	TRUE	0	0	0	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS6--RASA3	1	56	GAS6	13349	chr13:114529969:-	RASA3	45540	chr13:114748833:-	ONLY_REF_SPLICE	NO	811	204	0.07	0.22	0.0136	0.7607	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.22	0.7743	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	15	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2038	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2038	TRUE	1	39	0	134	39	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	11	16	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1494	0.2174	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3668	FALSE	369	2501	205	193	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	42	MT-TA	1059	chrM:5597:-	MT-TN	4091	chrM:5708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0.5705	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6248	FALSE	369	2501	205	193	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	12	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	1	0.85	0.96	0.163	0.1358	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.96	0.2988	FALSE	407	2205	196	549	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--IGL@	3	44	PVT1	1202	chr8:128806980:+	IGL@	93198	chr22:23248640:+	INCL_NON_REF_SPLICE	YES	138	3398	0.25	0.01	0.0408	0.5977	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,IGL@->Oncogene{Bushman}	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.25	0.6385	TRUE	0	0	0	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	15	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1358	0.2038	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3396	FALSE	499	1288	110	792	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544M6.1--LINC00923	13	0	CTD-2544M6.1	4364	chr15:98589896:-	LINC00923	10269	chr15:98301891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1766	0	CTD-2544M6.1->chr15:98589896-98836406:-,LINC00923->chr15:98285448-98417780:-,long_intergenic_non-protein_coding_RNA_923	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1766	TRUE	0	3	0	6	3	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	5	31	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0.4211	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.489	FALSE	369	2501	205	193	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	12	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	16252	21356	0	0	0.163	0.0136	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1766	FALSE	183	104	9	328	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCARB1--UBC	12	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.163	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.163	TRUE	55	66	6	101	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSPAN4--TALDO1	9	11	TSPAN4	6469	chr11:850367:+	TALDO1	17885	chr11:755879:+	ONLY_REF_SPLICE	YES	190	935	0.1	0.02	0.1223	0.1494	LOCAL_REARRANGEMENT:+:[77784],TSPAN4->chr11:842808-867116:+,tetraspanin_4,TALDO1->chr11:747329-765024:+,transaldolase_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.1	0.2717	TRUE	0	0	0	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	11	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1494	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1494	FALSE	230	198	14	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0951	0.2038	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.2989	FALSE	499	1288	110	792	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	27	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0543	0.3668	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.4211	FALSE	499	1288	110	792	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	7	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	26	29	0.45	0.42	0.0951	0.1902	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.45	0.2853	TRUE	267	562	48	632	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	8	10	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	17767	0	0	1	0.1087	0.1358	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2445	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1223	0.0543	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1766	FALSE	499	1288	110	792	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGAT5--IGL@	5	19	MGAT5	1309	chr2:134877862:+	IGL@	91687	chr22:23243284:+	INCL_NON_REF_SPLICE	YES	4	2440	0.86	0.01	0.0679	0.2581	MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,IGL@->Oncogene{Bushman}	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.86	0.326	TRUE	0	0	0	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGAT5--IGL@	5	19	MGAT5	1309	chr2:134877862:+	IGL@	94325	chr22:23248640:+	INCL_NON_REF_SPLICE	YES	4	3400	0.86	0.01	0.0679	0.2581	MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,IGL@->Oncogene{Bushman}	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.86	0.326	TRUE	0	0	0	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	15	MT-ND4	2214	chrM:11973:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	5970	0	0	1	0.0815	0.2038	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2853	FALSE	222	211	16	282	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	9	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	6	0	0.65	1	0.1223	0.0272	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	0.1495	FALSE	33	240	4	98	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	14	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0.1902	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2717	FALSE	369	2501	205	193	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1223	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1223	FALSE	13	9	0	364	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-319G9.5--WWOX	9	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1223	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1223	FALSE	154	425	28	76	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	6	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	4	0	0.82	1	0.0815	0.163	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.2445	FALSE	275	511	55	178	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	7	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	18973	0	0	1	0.0951	0.0951	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1902	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ME1--PGM3	5	14	ME1	3486	chr6:84108086:-	PGM3	38239	chr6:83876243:-	INCL_NON_REF_SPLICE	YES	65	5	0.23	0.79	0.0679	0.1902	NEIGHBORS[16453],ME1->chr6:83920108-84140797:-,malic_enzyme_1,PGM3->chr6:83870869-83903655:-,phosphoglucomutase_3	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.79	0.2581	FALSE	0	0	0	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGAT5--IGL@	4	18	MGAT5	1309	chr2:134877862:+	IGL@	100012	chr22:23264898:+	INCL_NON_REF_SPLICE	YES	4	31	0.85	0.42	0.0543	0.2445	MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,IGL@->Oncogene{Bushman}	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.85	0.2988	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	8	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1087	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1087	FALSE	351	233	23	137	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	8	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1087	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1087	FALSE	230	193	14	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGAT5--IGL@	3	19	MGAT5	20625	chr2:135206239:+	IGL@	94197	chr22:23248512:+	INCL_NON_REF_SPLICE	NO	67	2984	0.25	0.01	0.0408	0.2581	MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,IGL@->Oncogene{Bushman}	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.25	0.2989	FALSE	0	0	0	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGAT5--IGL@	3	19	MGAT5	1309	chr2:134877862:+	IGL@	89056	chr22:23237687:+	INCL_NON_REF_SPLICE	YES	4	3160	0.85	0.01	0.0408	0.2581	MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,IGL@->Oncogene{Bushman}	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.85	0.2989	TRUE	0	0	0	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FCHSD2--CARNS1	3	18	FCHSD2	10623	chr11:72695133:-	CARNS1	31970	chr11:67185902:+	ONLY_REF_SPLICE	YES	42	21	0.33	0.5	0.0408	0.2445	{Klijn_CCL:Lymphoid=1},FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,CARNS1->carnosine_synthase_1,chr11:67182439-67193078:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.5	0.2853	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	6	MT-ND4	1781	chrM:11540:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	19192	0	0	1	0.0815	0.0815	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.163	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	6	4	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0815	0.0543	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1358	TRUE	0	1	0	84	1	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	6	4	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0815	0.0543	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1358	TRUE	0	1	0	84	1	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0951	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0951	FALSE	231	204	14	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	7	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0951	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0951	TRUE	0	0	0	434	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	11	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	18700	0	0	1	0.0543	0.1494	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2037	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	15	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0408	0.2038	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.2446	FALSE	499	1288	110	792	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19567	0	0	1	0.0815	0.0272	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1087	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK1--AC107218.3	6	1	DOCK1	50349	chr10:129218013:+	AC107218.3	63490	chr2:215338493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0815	0.0136	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,AC107218.3->chr2:215114764-215548970:-	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13368	21356	0	0	0.0815	0.0136	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0951	FALSE	183	104	9	328	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	13	MT-ND4	2240	chrM:11999:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	3650	0	0	1	0.0408	0.1766	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2174	FALSE	216	209	16	281	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	5	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.0679	0.0543	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.1222	FALSE	20	187	4	79	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0815	FALSE	13	9	0	364	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IQCH--SPESP1	5	4	IQCH	2645	chr15:67553732:+	SPESP1	37942	chr15:69237938:+	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.0679	0.0543	IQCH->IQ_motif_containing_H,chr15:67547138-67794598:+,SPESP1->chr15:69110560-69239150:+,sperm_equatorial_segment_protein_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.1222	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0815	FALSE	462	80	0	856	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	28	29	0.33	0.33	0.0408	0.1494	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.33	0.1902	TRUE	267	562	48	632	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	11	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	18636	0	0	1	0.0408	0.1494	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1902	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	5	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	42	1	0.16	0.0679	0.0408	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.1087	TRUE	465	1949	224	605	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK5RAP2--VWC2L	5	2	CDK5RAP2	17729	chr9:123249572:-	VWC2L	54150	chr2:215301353:+	ONLY_REF_SPLICE	YES	26	0	0.21	1	0.0679	0.0272	CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,VWC2L->chr2:215275789-215443683:+,von_Willebrand_factor_C_domain_containing_protein_2-like	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19012	6	0	0.54	0.0679	0.0272	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.54	0.0951	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	13515	21341	0	0	0.0679	0.0136	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0815	FALSE	183	104	9	328	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0679	FALSE	230	198	14	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	8	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	18825	0	0	1	0.0408	0.1087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1495	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	3	MT-ATP6	1504	chrM:9030:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	8609	21571	0	0	0.0543	0.0408	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0951	FALSE	183	104	9	328	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK5RAP2--VWC2L	4	2	CDK5RAP2	16585	chr9:123253585:-	VWC2L	54150	chr2:215301353:+	ONLY_REF_SPLICE	YES	48	0	0.11	1	0.0543	0.0272	CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,VWC2L->chr2:215275789-215443683:+,von_Willebrand_factor_C_domain_containing_protein_2-like	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0815	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	4	2	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0543	0.0272	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0815	TRUE	0	1	0	84	1	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	2	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	18969	1622	0	0	0.0543	0.0272	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0815	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IQCH--SPESP1	3	5	IQCH	4858	chr15:67571850:+	SPESP1	37942	chr15:69237938:+	ONLY_REF_SPLICE	YES	6	0	0.57	1	0.0408	0.0679	IQCH->IQ_motif_containing_H,chr15:67547138-67794598:+,SPESP1->chr15:69110560-69239150:+,sperm_equatorial_segment_protein_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEIS2--RIMS1	4	1	MEIS2	12226	chr15:37329015:-	RIMS1	30862	chr6:72806652:+	ONLY_REF_SPLICE	YES	15	0	0.25	1	0.0543	0.0136	MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,RIMS1->chr6:72596406-73112845:+,regulating_synaptic_membrane_exocytosis_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0679	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	16126	19602	0	0	0.0543	0.0136	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0679	FALSE	183	104	9	328	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18485	58	0	0.12	0.0408	0.0679	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.12	0.1087	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IQCH--SPESP1	4	0	IQCH	2645	chr15:67553732:+	SPESP1	38284	chr15:69238280:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	IQCH->IQ_motif_containing_H,chr15:67547138-67794598:+,SPESP1->chr15:69110560-69239150:+,sperm_equatorial_segment_protein_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0543	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	4	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	18674	0	0	1	0.0408	0.0543	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0951	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0543	FALSE	230	193	14	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0543	FALSE	231	205	14	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1285	chrM:11044:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0543	FALSE	231	205	14	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0543	FALSE	369	2501	205	193	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0543	FALSE	369	2501	205	193	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0543	FALSE	369	2501	205	193	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNRNP35--APPL2	4	0	SNRNP35	1576	chr12:123942763:+	APPL2	16109	chr12:105623001:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0543	0	SNRNP35->chr12:123942188-123957701:+,small_nuclear_ribonucleoprotein_U11/U12_subunit_35,APPL2->adaptor_protein,_phosphotyrosine_interacting_with_PH_domain_and_leucine_zipper_2,chr12:105567074-105630016:-	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0543	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSPAN4--TALDO1	4	0	TSPAN4	1108	chr11:842915:+	TALDO1	17885	chr11:755879:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0543	0	LOCAL_REARRANGEMENT:+:[77784],TSPAN4->chr11:842808-867116:+,tetraspanin_4,TALDO1->chr11:747329-765024:+,transaldolase_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0543	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	3	MT-ATP6	1537	chrM:9063:+	MT-CO1	5319	chrM:6541:+	INCL_NON_REF_SPLICE	YES	5703	21067	0	0	0.0408	0.0408	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0816	FALSE	183	104	9	328	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	3	MT-ND4	1544	chrM:11303:+	MT-ATP8	5455	chrM:8442:+	INCL_NON_REF_SPLICE	YES	21556	0	0	1	0.0408	0.0408	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0816	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	3	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.4	0.0408	0.0408	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.0816	TRUE	458	1351	185	561	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAH10--TCTN2	3	2	DNAH10	14687	chr12:124281379:+	TCTN2	100668	chr12:124189079:+	ONLY_REF_SPLICE	YES	2	3	0.71	0.62	0.0408	0.0272	LOCAL_REARRANGEMENT:+:[54094],DNAH10->chr12:124247042-124420753:+,dynein_axonemal_heavy_chain_10,TCTN2->chr12:124155660-124192948:+,tectonic_family_member_2	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.71	0.068	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-ND1	3	2	MT-CO1	1699	chrM:6602:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	20624	6139	0	0	0.0408	0.0272	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.068	FALSE	39	30	6	19	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	2	MT-ND4	1461	chrM:11220:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	20604	0	0	1	0.0408	0.0272	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.068	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	2	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	19658	0	0	1	0.0408	0.0272	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.068	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC107218.3--VWC2L	3	1	AC107218.3	5450	chr2:215300916:-	VWC2L	12438	chr2:215278838:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0.0136	AC107218.3->chr2:215114764-215548970:-,VWC2L->chr2:215275789-215443683:+,von_Willebrand_factor_C_domain_containing_protein_2-like	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	16252	0	0	1	0.0408	0.0136	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0544	FALSE	182	97	9	327	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	13368	19003	0	0	0.0408	0.0136	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0544	FALSE	183	104	9	328	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5314	chrM:6536:+	INCL_NON_REF_SPLICE	YES	16252	20499	0	0	0.0408	0.0136	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0544	FALSE	183	104	9	328	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	NO	18992	995	0	0	0.0408	0.0136	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0544	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	21497	808	0	0	0.0408	0.0136	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0544	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20298	58	0	0.06	0.0408	0.0136	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.0544	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1566	chrM:11325:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	21007	549	0	0.01	0.0408	0.0136	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0544	FALSE	231	217	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRI3BP--UBC	3	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	5	99	5	34	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544M6.1--LINC00923	3	0	CTD-2544M6.1	4364	chr15:98589896:-	LINC00923	11441	chr15:98286713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	CTD-2544M6.1->chr15:98589896-98836406:-,LINC00923->chr15:98285448-98417780:-,long_intergenic_non-protein_coding_RNA_923	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	0	1	0	2	1	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	3	0	HSPBP1	1858	chr19:55790892:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	1	39	0	134	39	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	3	0	HSPBP1	1855	chr19:55790895:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	1	39	0	134	39	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-ND1	3	0	MT-CO1	1577	chrM:6480:+	MT-ND1	5559	chrM:3323:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	FALSE	39	30	6	19	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	3	0	MT-ND3	1094	chrM:10152:+	MT-ATP8	4474	chrM:8493:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	FALSE	351	233	23	137	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	FALSE	231	204	14	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	FALSE	230	193	14	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	FALSE	231	205	14	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1332	chrM:11091:+	MT-ATP8	5497	chrM:8484:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	FALSE	231	215	16	283	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	FALSE	499	1288	110	792	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	3	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	FALSE	369	2501	205	193	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WTAPP1--RUVBL1	3	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	9	252	6	66	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--MYC	2	2	PVT1	1202	chr8:128806980:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	138	985	0.03	0	0.0272	0.0272	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0544	FALSE	3	14	0	24	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BTAF1--MARCH5	2	1	BTAF1	12006	chr10:93722435:+	MARCH5	43654	chr10:94070892:+	ONLY_REF_SPLICE	YES	61	57	0.05	0.05	0.0272	0.0136	BTAF1->B-TFIID_TATA-box_binding_protein_associated_factor_1,chr10:93683526-93790082:+,MARCH5->chr10:94050920-94113721:+,membrane_associated_ring-CH-type_finger_5	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.05	0.0408	TRUE	0	0	0	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAH10--TCTN2	1	4	DNAH10	15813	chr12:124283918:+	TCTN2	101825	chr12:124191273:+	ONLY_REF_SPLICE	YES	0	6	1	0.45	0.0136	0.0543	LOCAL_REARRANGEMENT:+:[54094],DNAH10->chr12:124247042-124420753:+,dynein_axonemal_heavy_chain_10,TCTN2->chr12:124155660-124192948:+,tectonic_family_member_2	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	1	0.0679	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGAT5--MYC	2	0	MGAT5	1309	chr2:134877862:+	MYC	31769	chr8:128750494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	MGAT5->chr2:134877554-135212192:+,mannosyl_(alpha-1,6-)-glycoprotein_beta-1,6-N-acetyl-glucosaminyltransferase,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFA4--PHF14	2	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	19	32	3	60	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-114H21.2--CTB-1I21.1	1	4	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	22	0	0.19	1	0.0136	0.0543	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.0679	TRUE	0	2	0	12	2	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	FALSE	16	356	14	466	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TEX2--DDX5	2	0	TEX2	1134	chr17:62340528:-	DDX5	30452	chr17:62500960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	TEX2->chr17:62224587-62340661:-,testis_expressed_2,DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	1	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NADSYN1--TMEM132A	1	3	NADSYN1	7855	chr11:71175188:+	TMEM132A	42383	chr11:60694051:+	ONLY_REF_SPLICE	YES	90	3	0.04	0.57	0.0136	0.0408	NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+,TMEM132A->chr11:60691935-60704631:+,transmembrane_protein_132A	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.57	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEIS2--RIMS1	1	2	MEIS2	12226	chr15:37329015:-	RIMS1	29781	chr6:72678686:+	ONLY_REF_SPLICE	YES	15	0	0.17	1	0.0136	0.0272	MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,RIMS1->chr6:72596406-73112845:+,regulating_synaptic_membrane_exocytosis_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1138	31	0	0.09	0.0136	0.0272	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0408	FALSE	6	50	7	115	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC107218.3--VWC2L	1	1	AC107218.3	5450	chr2:215300916:-	VWC2L	14528	chr2:215301353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0.0136	AC107218.3->chr2:215114764-215548970:-,VWC2L->chr2:215275789-215443683:+,von_Willebrand_factor_C_domain_containing_protein_2-like	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-786C10.1--GSE1	1	1	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	NO	0	42	1	0.05	0.0136	0.0136	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0272	TRUE	2	3	0	21	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IQCH--SPESP1	1	1	IQCH	1148	chr15:67547285:+	SPESP1	37942	chr15:69237938:+	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.0136	0.0136	IQCH->IQ_motif_containing_H,chr15:67547138-67794598:+,SPESP1->chr15:69110560-69239150:+,sperm_equatorial_segment_protein_1	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NADSYN1--TMEM132A	1	1	NADSYN1	7855	chr11:71175188:+	TMEM132A	43008	chr11:60694676:+	ONLY_REF_SPLICE	NO	90	5	0.02	0.29	0.0136	0.0136	NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+,TMEM132A->chr11:60691935-60704631:+,transmembrane_protein_132A	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.29	0.0272	TRUE	0	0	0	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NQO2--IGJ	1	1	NQO2	9651	chr6:3006793:+	IGJ	20325	chr4:71532231:-	ONLY_REF_SPLICE	YES	156	185	0.01	0.01	0.0136	0.0136	NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+,IGJ->chr4:71521258-71547534:-	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-169F17.1--ZNF407	1	1	RP11-169F17.1	1241	chr18:70931475:-	ZNF407	26202	chr18:72352964:+	ONLY_REF_SPLICE	YES	76	17	0.03	0.11	0.0136	0.0136	RP11-169F17.1->chr18:70818476-70931715:-,ZNF407->chr18:72265106-72777627:+,zinc_finger_protein_407	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.11	0.0272	TRUE	0	0	0	1	0	FALSE	ACH-000817
RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0136	0.0136	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	62	24	1	171	0	FALSE	ACH-000817
OV56_OVARY	MT-TA--MT-TN	138	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3094	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV56_OVARY	1	1	1.3094	FALSE	369	2501	205	193	0	FALSE	ACH-000091
OV56_OVARY	KANSL1--ARL17B	113	41	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	19	12	0.89	0.93	1.0722	0.389	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	OV56_OVARY	0.89	0.93	1.4612	TRUE	181	1564	124	196	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TC	71	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6737	0.0664	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OV56_OVARY	1	1	0.7401	FALSE	462	80	0	856	0	FALSE	ACH-000091
OV56_OVARY	TIMM23B--LINC00843	67	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6357	0.1708	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OV56_OVARY	1	1	0.8065	TRUE	508	994	45	981	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	40	40	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	434	0	0.16	1	0.3795	0.3795	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.16	1	0.759	FALSE	344	827	44	306	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	4	180	MT-ND4	1459	chrM:11218:+	MT-ND4L	5475	chrM:10566:+	INCL_NON_REF_SPLICE	YES	183	0	0.5	1	0.038	1.7079	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.5	1	1.7459	FALSE	344	827	44	306	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	3	178	MT-ND4	1114	chrM:10873:+	MT-ND4L	5509	chrM:10600:+	INCL_NON_REF_SPLICE	NO	9	2	0.95	0.99	0.0285	1.689	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.95	0.99	1.7175	FALSE	344	826	44	306	0	FALSE	ACH-000091
OV56_OVARY	TIMM23--RP11-464F9.1	44	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	157	3	0.23	0.94	0.4175	0.0285	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OV56_OVARY	0.23	0.94	0.446	TRUE	519	3926	326	965	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	11	122	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	2	0.98	0.99	0.1044	1.1576	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.98	0.99	1.262	FALSE	344	821	44	306	0	FALSE	ACH-000091
OV56_OVARY	PLXDC1--TAF13	41	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.389	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	OV56_OVARY	1	1	0.389	TRUE	7	10	0	216	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TN	14	94	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1328	0.8919	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV56_OVARY	1	1	1.0247	FALSE	369	2501	205	193	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	24	39	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10	0	0.86	1	0.2277	0.3701	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.86	1	0.5978	FALSE	344	826	44	306	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TN	19	47	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1803	0.446	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV56_OVARY	1	1	0.6263	FALSE	369	2501	205	193	0	FALSE	ACH-000091
OV56_OVARY	MT-ND6--MT-TE	29	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2752	0.0474	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV56_OVARY	1	1	0.3226	FALSE	499	1288	110	792	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	18	40	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	15	0	0.79	1	0.1708	0.3795	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.79	1	0.5503	FALSE	344	826	44	306	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	12	60	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8157	0	0.01	1	0.1139	0.5693	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.01	1	0.6832	FALSE	328	800	43	304	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TC	25	8	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2372	0.0759	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OV56_OVARY	1	1	0.3131	FALSE	462	80	0	856	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TN	19	32	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1803	0.3036	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV56_OVARY	1	1	0.4839	FALSE	369	2501	205	193	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TN	9	69	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0854	0.6547	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV56_OVARY	1	1	0.7401	FALSE	369	2501	205	193	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	9	55	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	3	0	0.96	1	0.0854	0.5219	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.96	1	0.6073	FALSE	344	821	44	306	0	FALSE	ACH-000091
OV56_OVARY	MT-ND6--MT-TE	20	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1898	0.0474	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV56_OVARY	1	1	0.2372	FALSE	499	1288	110	792	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TN	12	37	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1139	0.3511	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV56_OVARY	1	1	0.465	FALSE	369	2501	205	193	0	FALSE	ACH-000091
OV56_OVARY	RP11-662B19.2--WDR37	21	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1993	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	OV56_OVARY	1	1	0.1993	TRUE	31	42	1	25	0	FALSE	ACH-000091
OV56_OVARY	MT-TC--MT-TY	19	1	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1803	0.0095	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OV56_OVARY	1	1	0.1898	FALSE	51	280	19	36	0	FALSE	ACH-000091
OV56_OVARY	CCDC122--ENOX1	18	2	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	14	6	0.59	0.77	0.1708	0.019	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	OV56_OVARY	0.59	0.77	0.1898	FALSE	39	52	2	34	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	18	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.1708	0.0095	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	1	1	0.1803	FALSE	344	821	44	306	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	3	60	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	383	0	0.14	1	0.0285	0.5693	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.14	1	0.5978	FALSE	344	827	44	306	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	7	40	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	224	0	0.17	1	0.0664	0.3795	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.17	1	0.4459	FALSE	344	827	44	306	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TN	6	43	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0569	0.408	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV56_OVARY	1	1	0.4649	FALSE	369	2501	205	193	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	6	40	MT-ND4	1213	chrM:10972:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	16	0	0.74	1	0.0569	0.3795	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.74	1	0.4364	FALSE	344	826	44	306	0	FALSE	ACH-000091
OV56_OVARY	MT-ND6--MT-TE	11	20	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1044	0.1898	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV56_OVARY	0.97	1	0.2942	FALSE	499	1288	110	792	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TN	16	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1518	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV56_OVARY	1	1	0.1518	FALSE	369	2501	205	193	0	FALSE	ACH-000091
OV56_OVARY	MT-ND1--MT-TL1	4	44	MT-ND1	1090	chrM:3396:+	MT-TL1	4984	chrM:3257:+	INCL_NON_REF_SPLICE	NO	1	0	0.98	1	0.038	0.4175	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	OV56_OVARY	0.98	1	0.4555	FALSE	210	95	5	49	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	5	40	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9242	0	0	1	0.0474	0.3795	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0	1	0.4269	FALSE	343	822	44	305	0	FALSE	ACH-000091
OV56_OVARY	MT-TC--MT-TY	4	41	MT-TC	1061	chrM:5766:-	MT-TY	4075	chrM:5883:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0.389	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OV56_OVARY	1	1	0.427	FALSE	51	280	19	36	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	5	34	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	16	0	0.71	1	0.0474	0.3226	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.71	1	0.37	FALSE	344	826	44	306	0	FALSE	ACH-000091
OV56_OVARY	MT-ND1--MT-TL1	11	8	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1044	0.0759	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	OV56_OVARY	1	1	0.1803	FALSE	210	95	5	49	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	3	40	MT-ND4	1452	chrM:11211:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	171	0	0.2	1	0.0285	0.3795	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.2	1	0.408	FALSE	344	827	44	306	0	FALSE	ACH-000091
OV56_OVARY	MT-CO3--MT-ATP6	9	14	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	5	0.88	0.82	0.0854	0.1328	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OV56_OVARY	0.82	0.88	0.2182	FALSE	189	492	56	216	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TN	12	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1139	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV56_OVARY	1	1	0.1139	FALSE	369	2501	205	193	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	5	26	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0474	0.2467	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.94	1	0.2941	FALSE	344	821	44	306	0	FALSE	ACH-000091
OV56_OVARY	IGFBP4--NPM1	11	1	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	1686	1	0.01	0.92	0.1044	0.0095	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	OV56_OVARY	0.01	0.92	0.1139	TRUE	0	0	0	38	0	FALSE	ACH-000091
OV56_OVARY	NRIP1--AF127936.7	10	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.82	1	0.0949	0.038	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OV56_OVARY	0.82	1	0.1329	FALSE	292	1546	117	613	0	FALSE	ACH-000091
OV56_OVARY	MT-ND6--MT-TE	4	27	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.038	0.2562	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV56_OVARY	0.97	1	0.2942	FALSE	499	1288	110	792	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	3	24	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	16	0	0.63	1	0.0285	0.2277	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.63	1	0.2562	FALSE	344	826	44	306	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	3	24	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	27	0	0.5	1	0.0285	0.2277	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.5	1	0.2562	FALSE	344	827	44	306	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TN	9	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0854	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV56_OVARY	1	1	0.0854	FALSE	369	2501	205	193	0	FALSE	ACH-000091
OV56_OVARY	MT-ND1--MT-TL1	4	18	MT-ND1	1342	chrM:3648:+	MT-TL1	5013	chrM:3286:+	INCL_NON_REF_SPLICE	YES	30	0	0.42	1	0.038	0.1708	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	OV56_OVARY	0.42	1	0.2088	FALSE	210	95	5	49	0	FALSE	ACH-000091
OV56_OVARY	MT-CO3--MT-ATP6	4	15	MT-CO3	1220	chrM:9426:+	MT-ATP6	5072	chrM:8814:+	INCL_NON_REF_SPLICE	YES	4	13	0.83	0.59	0.038	0.1423	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OV56_OVARY	0.59	0.83	0.1803	FALSE	189	492	56	216	0	FALSE	ACH-000091
OV56_OVARY	MT-ND1--MT-TL1	7	2	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0664	0.019	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	OV56_OVARY	0.9	1	0.0854	FALSE	210	95	5	49	0	FALSE	ACH-000091
OV56_OVARY	RP11-680G10.1--GSE1	7	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	7	1	0.56	0.0664	0.019	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	OV56_OVARY	0.56	1	0.0854	TRUE	465	1949	224	605	0	FALSE	ACH-000091
OV56_OVARY	MT-ND2--MT-TM	7	0	MT-ND2	1017	chrM:4486:+	MT-TM	5076	chrM:4435:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0	LOCAL_REARRANGEMENT:+:[1],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-TM->chrM:4402-4469:+,mitochondrially_encoded_tRNA_methionine	OV56_OVARY	1	1	0.0664	FALSE	74	23	0	9	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OV56_OVARY	1	1	0.0664	FALSE	462	80	0	856	0	FALSE	ACH-000091
OV56_OVARY	MT-TC--MT-TY	7	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OV56_OVARY	1	1	0.0664	FALSE	51	280	19	36	0	FALSE	ACH-000091
OV56_OVARY	RP11-96H19.1--RP11-446N19.1	7	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0664	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OV56_OVARY	1	1	0.0664	FALSE	515	4851	409	746	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TC	4	11	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0.1044	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OV56_OVARY	1	1	0.1424	FALSE	462	80	0	856	0	FALSE	ACH-000091
OV56_OVARY	RPSAP52--HMGA2	6	3	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	7	263	0.56	0.03	0.0569	0.0285	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	OV56_OVARY	0.03	0.56	0.0854	FALSE	0	59	0	125	0	FALSE	ACH-000091
OV56_OVARY	DNAJC25--UGCG	6	2	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	45	90	0.15	0.08	0.0569	0.019	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	OV56_OVARY	0.08	0.15	0.0759	TRUE	50	73	10	50	0	FALSE	ACH-000091
OV56_OVARY	SLC16A12--LIPA	6	2	SLC16A12	5062	chr10:91222136:-	LIPA	29664	chr10:91007406:-	ONLY_REF_SPLICE	YES	8	40	0.5	0.17	0.0569	0.019	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	OV56_OVARY	0.17	0.5	0.0759	FALSE	12	128	21	13	0	FALSE	ACH-000091
OV56_OVARY	MT-ND6--MT-TE	6	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0569	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV56_OVARY	1	1	0.0569	FALSE	499	1288	110	792	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0569	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV56_OVARY	1	1	0.0569	FALSE	369	2501	205	193	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	4	5	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.9	0.038	0.0474	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.9	1	0.0854	FALSE	344	821	44	306	0	FALSE	ACH-000091
OV56_OVARY	MT-ND1--MT-TL1	3	8	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	16	0	0.41	1	0.0285	0.0759	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	OV56_OVARY	0.41	1	0.1044	FALSE	210	95	5	49	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TC	3	6	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0.0569	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OV56_OVARY	1	1	0.0854	FALSE	462	80	0	856	0	FALSE	ACH-000091
OV56_OVARY	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	8	1	0.38	0.038	0.0095	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OV56_OVARY	0.38	1	0.0475	FALSE	16	356	14	466	0	FALSE	ACH-000091
OV56_OVARY	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OV56_OVARY	1	1	0.038	FALSE	189	492	56	216	0	FALSE	ACH-000091
OV56_OVARY	MT-ND2--MT-TM	3	4	MT-ND2	1210	chrM:4679:+	MT-TM	5108	chrM:4467:+	INCL_NON_REF_SPLICE	YES	79	0	0.08	1	0.0285	0.038	LOCAL_REARRANGEMENT:+:[1],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-TM->chrM:4402-4469:+,mitochondrially_encoded_tRNA_methionine	OV56_OVARY	0.08	1	0.0665	FALSE	74	23	0	9	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	3	4	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.0285	0.038	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.7	1	0.0665	FALSE	344	821	44	306	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0.038	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OV56_OVARY	1	1	0.0665	FALSE	462	80	0	856	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TN	4	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV56_OVARY	1	1	0.038	FALSE	369	2501	205	193	0	FALSE	ACH-000091
OV56_OVARY	PLCB4--PLCB1	4	0	PLCB4	1141	chr20:9049550:+	PLCB1	86832	chr20:8862269:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.038	0	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	OV56_OVARY	1	1	0.038	TRUE	0	0	0	2	0	TRUE	ACH-000091
OV56_OVARY	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.038	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	OV56_OVARY	1	1	0.038	TRUE	22	156	2	142	0	FALSE	ACH-000091
OV56_OVARY	VTI1A--RP11-57H14.3	4	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.038	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	OV56_OVARY	1	1	0.038	FALSE	272	151	14	158	0	FALSE	ACH-000091
OV56_OVARY	MT-CO3--MT-ATP6	3	3	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	3	0	0.67	1	0.0285	0.0285	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OV56_OVARY	0.67	1	0.057	FALSE	189	492	56	216	0	FALSE	ACH-000091
OV56_OVARY	MT-CO3--MT-ATP6	3	2	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	5	0	0.5	1	0.0285	0.019	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OV56_OVARY	0.5	1	0.0475	FALSE	189	492	56	216	0	FALSE	ACH-000091
OV56_OVARY	MT-ND4--MT-ND4L	3	2	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	4	1	0.56	0.83	0.0285	0.019	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV56_OVARY	0.56	0.83	0.0475	FALSE	344	821	44	306	0	FALSE	ACH-000091
OV56_OVARY	MT-CO3--MT-ATP6	3	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	4	0	0.5	1	0.0285	0.0095	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OV56_OVARY	0.5	1	0.038	FALSE	189	492	56	216	0	FALSE	ACH-000091
OV56_OVARY	IGFBP4--NPM1	3	0	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	OV56_OVARY	1	1	0.0285	TRUE	0	0	0	38	0	FALSE	ACH-000091
OV56_OVARY	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OV56_OVARY	1	1	0.0285	FALSE	189	492	56	216	0	FALSE	ACH-000091
OV56_OVARY	MT-ND2--MT-TM	3	0	MT-ND2	1030	chrM:4499:+	MT-TM	5058	chrM:4417:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0	LOCAL_REARRANGEMENT:+:[1],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-TM->chrM:4402-4469:+,mitochondrially_encoded_tRNA_methionine	OV56_OVARY	1	1	0.0285	FALSE	74	23	0	9	0	FALSE	ACH-000091
OV56_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV56_OVARY	1	1	0.0285	FALSE	499	1288	110	792	0	FALSE	ACH-000091
OV56_OVARY	MT-TA--MT-TN	3	0	MT-TA	1020	chrM:5636:-	MT-TN	4113	chrM:5686:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV56_OVARY	1	1	0.0285	FALSE	369	2501	205	193	0	FALSE	ACH-000091
OV56_OVARY	NRIP1--AF127936.7	2	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.38	1	0.019	0.038	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OV56_OVARY	0.38	1	0.057	FALSE	125	705	46	456	0	FALSE	ACH-000091
OV56_OVARY	VEGFA--SRSF5	3	0	VEGFA	9283	chr6:43746273:+	SRSF5	26610	chr14:70237914:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	VEGFA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:43737921-43754224:+,vascular_endothelial_growth_factor_A,SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5	OV56_OVARY	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000091
OV56_OVARY	RP11-680G10.1--GSE1	2	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	4	1	0.56	0.019	0.0285	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	OV56_OVARY	0.56	1	0.0475	TRUE	458	1351	185	561	0	FALSE	ACH-000091
OV56_OVARY	KANSL1--ARL17B	1	6	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	23	12	0.23	0.37	0.0095	0.0569	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	OV56_OVARY	0.23	0.37	0.0664	TRUE	105	90	7	93	0	FALSE	ACH-000091
OV56_OVARY	RP11-108K3.1--GLDN	2	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.019	0.019	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	OV56_OVARY	1	1	0.038	FALSE	0	30	1	55	0	FALSE	ACH-000091
OV56_OVARY	RP11-108K3.1--GLDN	2	1	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.019	0.0095	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	OV56_OVARY	1	1	0.0285	FALSE	0	14	0	30	0	FALSE	ACH-000091
OV56_OVARY	RP11-120D5.1--MID1	2	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	8	0.75	0.27	0.019	0.0095	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OV56_OVARY	0.27	0.75	0.0285	FALSE	0	48	1	163	0	FALSE	ACH-000091
OV56_OVARY	CAPZB--ECE1	2	0	CAPZB	1137	chr1:19811930:-	ECE1	23496	chr1:21616649:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,ECE1->chr1:21543740-21671997:-,endothelin_converting_enzyme_1	OV56_OVARY	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000091
OV56_OVARY	FKBP5--NRN1	2	0	FKBP5	3436	chr6:35656581:-	NRN1	27624	chr6:6002730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	FKBP5->FK506_binding_protein_5,chr6:35541362-35696360:-,NRN1->chr6:5998232-6007200:-,neuritin_1	OV56_OVARY	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000091
OV56_OVARY	GATS--PILRB	2	0	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	OV56_OVARY	1	1	0.019	TRUE	57	41	2	35	0	FALSE	ACH-000091
OV56_OVARY	LAPTM4A--SAT1	2	0	LAPTM4A	4039	chr2:20237077:-	SAT1	11224	chrX:23801917:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	LAPTM4A->chr2:20232411-20251789:-,lysosomal_protein_transmembrane_4_alpha,SAT1->chrX:23801290-23804343:+,spermidine/spermine_N1-acetyltransferase_1	OV56_OVARY	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000091
OV56_OVARY	MAATS1--GSK3B	2	0	MAATS1	8750	chr3:119434590:+	GSK3B	42255	chr3:119545702:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	LOCAL_INVERSION:+:-:[54221],MAATS1->MYCBP_associated_and_testis_expressed_1,chr3:119421869-119485949:+,GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta	OV56_OVARY	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000091
OV56_OVARY	NCOR2--UBC	2	0	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	OV56_OVARY	1	1	0.019	TRUE	52	148	13	33	0	FALSE	ACH-000091
OV56_OVARY	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	OV56_OVARY	1	1	0.019	TRUE	145	312	16	51	0	FALSE	ACH-000091
OV56_OVARY	NRIP1--AF127936.7	1	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	32	0	0.14	1	0.0095	0.038	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OV56_OVARY	0.14	1	0.0475	FALSE	164	806	69	479	0	FALSE	ACH-000091
OV56_OVARY	NUP214--CYB5R2	2	0	NUP214	5925	chr9:134006223:+	CYB5R2	55733	chr11:7689792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,CYB5R2->chr11:7686331-7698453:-,cytochrome_b5_reductase_2	OV56_OVARY	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000091
OV56_OVARY	RCC1--GLUD1P6	2	0	RCC1	2175	chr1:28834672:+	GLUD1P6	20011	chr10:48171409:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GLUD1P6->chr10:48169665-48175810:-,glutamate_dehydrogenase_1_pseudogene_6	OV56_OVARY	1	1	0.019	TRUE	0	1	0	1	1	TRUE	ACH-000091
OV56_OVARY	RP11-152P17.2--CBFA2T2	2	0	RP11-152P17.2	5703	chr8:106810553:-	CBFA2T2	33917	chr20:32228150:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	RP11-152P17.2->chr8:106792474-107072752:-,CBFA2T2->CBFA2/RUNX1_translocation_partner_2,chr20:32077881-32237842:+	OV56_OVARY	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000091
OV56_OVARY	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	OV56_OVARY	1	1	0.019	FALSE	28	14	1	23	0	FALSE	ACH-000091
OV56_OVARY	WASF2--MPL	2	0	WASF2	1173	chr1:27816497:-	MPL	20905	chr1:43812116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	WASF2->Oncogene{Bushman},WAS_protein_family_member_2,chr1:27730730-27816669:-,MPL->ArcherDX_panel,FoundationOne_panel,MPL_proto-oncogene,_thrombopoietin_receptor,Oncogene{Bushman},chr1:43803478-43818443:+	OV56_OVARY	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000091
OV56_OVARY	BRI3BP--UBC	1	2	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	7	220	0.3	0.01	0.0095	0.019	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	OV56_OVARY	0.01	0.3	0.0285	FALSE	5	99	5	34	0	FALSE	ACH-000091
OV56_OVARY	KANSL1--ARL17B	1	2	KANSL1	9741	chr17:44171926:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	19	2	0.14	0.6	0.0095	0.019	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	OV56_OVARY	0.14	0.6	0.0285	TRUE	51	25	1	17	0	FALSE	ACH-000091
OV56_OVARY	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0095	0.019	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	OV56_OVARY	1	1	0.0285	FALSE	0	19	0	46	0	FALSE	ACH-000091
OV56_OVARY	SLC16A12--LIPA	1	2	SLC16A12	5062	chr10:91222136:-	LIPA	18335	chr10:91172679:-	ONLY_REF_SPLICE	YES	8	1	0.27	0.75	0.0095	0.019	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	OV56_OVARY	0.27	0.75	0.0285	FALSE	0	24	3	7	0	FALSE	ACH-000091
OV56_OVARY	SLC16A12--LIPA	1	2	SLC16A12	5062	chr10:91222136:-	LIPA	22973	chr10:91074416:-	ONLY_REF_SPLICE	YES	8	3	0.27	0.5	0.0095	0.019	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	OV56_OVARY	0.27	0.5	0.0285	FALSE	1	78	7	7	0	FALSE	ACH-000091
OV56_OVARY	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	1	10	0.67	0.17	0.0095	0.0095	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OV56_OVARY	0.17	0.67	0.019	FALSE	0	5	0	14	0	FALSE	ACH-000091
VMRCRCZ_KIDNEY	MT-TA--MT-TC	57	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7319	0.0899	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	VMRCRCZ_KIDNEY	1	1	0.8218	FALSE	462	80	0	856	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	SHISA9--U91319.1	30	7	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	6	0	0.86	1	0.3852	0.0899	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	VMRCRCZ_KIDNEY	0.86	1	0.4751	FALSE	4	37	0	19	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	TIMM23B--LINC00843	25	7	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.321	0.0899	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	VMRCRCZ_KIDNEY	0.97	1	0.4109	TRUE	508	994	45	981	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	MT-ND6--MT-TE	14	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1798	0.0385	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	VMRCRCZ_KIDNEY	1	1	0.2183	FALSE	499	1288	110	792	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	NRIP1--AF127936.7	11	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1412	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	VMRCRCZ_KIDNEY	1	1	0.1412	FALSE	292	1546	117	613	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	STIM1--PPFIBP2	10	4	STIM1	10884	chr11:3988912:+	PPFIBP2	37835	chr11:7570671:+	ONLY_REF_SPLICE	YES	18	0	0.44	1	0.1284	0.0514	HGNC_GENEFAM,STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1,PPFIBP2->PPFIA_binding_protein_2,chr11:7534529-7678358:+	VMRCRCZ_KIDNEY	0.44	1	0.1798	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	MT-ND6--MT-TE	9	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.1156	0.0899	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	VMRCRCZ_KIDNEY	0.89	1	0.2055	FALSE	499	1288	110	792	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	BLACE--PGBD2	9	1	BLACE	2220	chr7:155155799:-	PGBD2	13509	chr1:249210801:+	ONLY_REF_SPLICE	YES	0	2	1	0.83	0.1156	0.0128	BLACE->B-cell_acute_lymphoblastic_leukemia_expressed,chr7:155149680-155160629:-,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	VMRCRCZ_KIDNEY	0.83	1	0.1284	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	MT-TA--MT-TC	7	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0899	0.0642	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	VMRCRCZ_KIDNEY	1	1	0.1541	FALSE	462	80	0	856	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	AP000525.9--LA16c-60G3.6	8	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1027	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	VMRCRCZ_KIDNEY	1	1	0.1027	TRUE	0	42	0	133	42	FALSE	ACH-000171
VMRCRCZ_KIDNEY	MT-ND6--MT-TE	5	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0642	0.0385	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	VMRCRCZ_KIDNEY	1	1	0.1027	FALSE	499	1288	110	792	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	MT-ND6--MT-TE	3	10	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.0385	0.1284	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	VMRCRCZ_KIDNEY	0.87	1	0.1669	FALSE	499	1288	110	792	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	MT-ND6--MT-TE	3	10	MT-ND6	1196	chrM:14478:-	MT-TE	4557	chrM:14711:-	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.0385	0.1284	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	VMRCRCZ_KIDNEY	0.87	1	0.1669	FALSE	499	1288	110	792	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	ACTR3C--BLACE	5	1	ACTR3C	9721	chr7:149946037:-	BLACE	18880	chr7:155155892:-	ONLY_REF_SPLICE	YES	38	0	0.14	1	0.0642	0.0128	ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,BLACE->B-cell_acute_lymphoblastic_leukemia_expressed,chr7:155149680-155160629:-	VMRCRCZ_KIDNEY	0.14	1	0.077	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	RP11-96H19.1--RP11-446N19.1	5	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0642	0.0128	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	VMRCRCZ_KIDNEY	1	1	0.077	FALSE	515	4851	409	746	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	MT-ND6--MT-TE	3	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0.0899	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	VMRCRCZ_KIDNEY	1	1	0.1284	FALSE	499	1288	110	792	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	MT-ND6--MT-TE	3	7	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	NO	2	0	0.83	1	0.0385	0.0899	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	VMRCRCZ_KIDNEY	0.83	1	0.1284	FALSE	499	1288	110	792	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	NRIP1--AF127936.7	4	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0514	0.0128	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	VMRCRCZ_KIDNEY	0.26	1	0.0642	FALSE	164	806	69	479	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	SIPA1L2--AC114765.2	4	1	SIPA1L2	21555	chr1:232564157:-	AC114765.2	34461	chr2:221077078:+	ONLY_REF_SPLICE	YES	8	0	0.38	1	0.0514	0.0128	SIPA1L2->chr1:232533711-232697304:-,signal_induced_proliferation_associated_1_like_2,AC114765.2->chr2:220992267-221077212:+	VMRCRCZ_KIDNEY	0.38	1	0.0642	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0514	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	VMRCRCZ_KIDNEY	1	1	0.0514	FALSE	462	80	0	856	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	MTAP--RP11-399D6.2	3	1	MTAP	7556	chr9:21818201:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0385	0.0128	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	VMRCRCZ_KIDNEY	0.8	1	0.0513	TRUE	0	0	0	2	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	MATR3--HSPA9	3	0	MATR3	9772	chr5:138629494:+	HSPA9	41053	chr5:137897478:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	MATR3->chr5:138609441-138667360:+,matrin_3,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	VMRCRCZ_KIDNEY	1	1	0.0385	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	PPP6R2--LIME1	3	0	PPP6R2	2378	chr22:50810579:+	LIME1	30215	chr20:62368886:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2,LIME1->Lck_interacting_transmembrane_adaptor_1,chr20:62366815-62370456:+	VMRCRCZ_KIDNEY	1	1	0.0385	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0.0257	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	VMRCRCZ_KIDNEY	1	1	0.0514	FALSE	467	2173	244	435	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	AACS--GET4	2	0	AACS	15766	chr12:125599103:+	GET4	42852	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	AACS->acetoacetyl-CoA_synthetase,chr12:125549925-125627873:+,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	BSDC1--FAF1	2	0	BSDC1	1652	chr1:32859681:-	FAF1	37947	chr1:50957473:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	BSDC1->BSD_domain_containing_1,chr1:32830704-32860332:-,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	2	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	CENPT--E2F1	2	0	CENPT	11328	chr16:67863833:-	E2F1	17945	chr20:32267780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	CENPT->centromere_protein_T,chr16:67862060-67881714:-,E2F1->E2F_transcription_factor_1,Oncogene{Bushman},chr20:32263489-32274210:-	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	EXOC6B--TCF12	2	0	EXOC6B	1244	chr2:73052927:-	TCF12	40576	chr15:57355948:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	EXOC6B->chr2:72403113-73053170:-,exocyst_complex_component_6B,TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	GNGT1--AC002076.10	2	0	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	VMRCRCZ_KIDNEY	1	1	0.0257	FALSE	0	28	0	37	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	MFI2--TIAL1	2	0	MFI2	8872	chr3:196748275:-	TIAL1	36112	chr10:121337248:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	MFI2->chr3:196715492-196756687:-,TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	PBX3--MAPKAP1	2	0	PBX3	2279	chr9:128510902:+	MAPKAP1	33948	chr9:128322088:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	4	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	PSG5--GTPBP4	2	0	PSG5	8214	chr19:43679367:-	GTPBP4	20773	chr10:1043148:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	PSG5->chr19:43670408-43690688:-,pregnancy_specific_beta-1-glycoprotein_5,GTPBP4->GTP_binding_protein_4,chr10:1034338-1065876:+	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	VMRCRCZ_KIDNEY	1	1	0.0257	FALSE	416	2512	207	587	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	53	396	64	110	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	SIPA1L3--UBA2	2	0	SIPA1L3	4162	chr19:38519796:+	UBA2	44933	chr19:34925773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,UBA2->chr19:34919257-34960853:+,ubiquitin_like_modifier_activating_enzyme_2	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	TCIRG1--AP3D1	2	0	TCIRG1	8650	chr11:67815271:+	AP3D1	33242	chr19:2114301:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	TCIRG1->Oncogene{Bushman},T-cell_immune_regulator_1,_ATPase_H+_transporting_V0_subunit_a3,chr11:67806483-67818362:+,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	TMEM194A--STAT6	2	0	TMEM194A	2264	chr12:57472402:-	STAT6	27725	chr12:57496704:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	LOCAL_REARRANGEMENT:-:[7345],TMEM194A->chr12:57449426-57481846:-,STAT6->Oncogene{Bushman},chr12:57489191-57525922:-,signal_transducer_and_activator_of_transcription_6	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	ZNF740--MARS	2	0	ZNF740	5110	chr12:53580293:+	MARS	17421	chr12:57883679:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	ZNF740->chr12:53574484-53584596:+,zinc_finger_protein_740,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	VMRCRCZ_KIDNEY	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	STIM1--PPFIBP2	1	3	STIM1	2883	chr11:3877639:+	PPFIBP2	37835	chr11:7570671:+	ONLY_REF_SPLICE	NO	8	0	0.33	1	0.0128	0.0385	HGNC_GENEFAM,STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1,PPFIBP2->PPFIA_binding_protein_2,chr11:7534529-7678358:+	VMRCRCZ_KIDNEY	0.33	1	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000171
VMRCRCZ_KIDNEY	GNGT1--AC002076.10	1	1	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	NO	0	1	1	0.67	0.0128	0.0128	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	VMRCRCZ_KIDNEY	0.67	1	0.0256	FALSE	0	10	0	30	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	10	0	0.17	1	0.0128	0.0128	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	VMRCRCZ_KIDNEY	0.17	1	0.0256	FALSE	125	705	46	456	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0128	0.0128	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	VMRCRCZ_KIDNEY	1	1	0.0256	FALSE	275	511	55	178	0	FALSE	ACH-000171
VMRCRCZ_KIDNEY	SHISA9--U91319.1	1	1	SHISA9	9974	chr16:13297406:+	U91319.1	24024	chr16:13568067:+	ONLY_REF_SPLICE	NO	6	4	0.25	0.33	0.0128	0.0128	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	VMRCRCZ_KIDNEY	0.25	0.33	0.0256	FALSE	1	17	0	8	0	FALSE	ACH-000171
KYSE510_OESOPHAGUS	FTL--MT-CO1	479	3	FTL	1296	chr19:49468853:+	MT-CO1	5895	chrM:6220:+	INCL_NON_REF_SPLICE	YES	17507	23439	0.03	0.02	6.1999	0.0388	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE510_OESOPHAGUS	0.02	0.03	6.2387	FALSE	0	7	0	14	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MRRF--IKBKAP	153	185	MRRF	3446	chr9:125033354:+	IKBKAP	24163	chr9:111674774:-	ONLY_REF_SPLICE	YES	264	101	0.56	0.77	1.9804	2.3945	{Klijn_CCL:Head-Neck=1},MRRF->chr9:125026882-125085743:+,mitochondrial_ribosome_recycling_factor,IKBKAP->chr9:111629797-111696396:-,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_complex-associated_protein	KYSE510_OESOPHAGUS	0.56	0.77	4.3749	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	DPP8--PTPLAD1	67	70	DPP8	6033	chr15:65799581:-	PTPLAD1	37988	chr15:65844014:+	ONLY_REF_SPLICE	YES	34	616	0.8	0.18	0.8672	0.906	{Klijn_CCL:Head-Neck=1},LOCAL_INVERSION:-:+:[12714],DPP8->chr15:65734801-65810042:-,dipeptidyl_peptidase_8,PTPLAD1->chr15:65822756-65870687:+	KYSE510_OESOPHAGUS	0.18	0.8	1.7732	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	GRWD1--GRIN2D	52	50	GRWD1	2071	chr19:48950100:+	GRIN2D	22386	chr19:48945026:+	ONLY_REF_SPLICE	YES	285	3	0.26	0.97	0.6731	0.6472	LOCAL_REARRANGEMENT:+:[842],GRWD1->chr19:48949030-48960279:+,glutamate-rich_WD_repeat_containing_1,GRIN2D->Oncogene{Bushman},chr19:48898132-48948188:+,glutamate_ionotropic_receptor_NMDA_type_subunit_2D	KYSE510_OESOPHAGUS	0.26	0.97	1.3203	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	TIMM23B--LINC00843	41	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5307	0.2977	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KYSE510_OESOPHAGUS	1	1	0.8284	TRUE	508	994	45	981	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-TA--MT-TC	44	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5695	0.1035	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE510_OESOPHAGUS	1	1	0.673	FALSE	462	80	0	856	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	H19--FTL	21	26	H19	3986	chr11:2017373:-	FTL	7995	chr19:49468599:+	INCL_NON_REF_SPLICE	YES	12135	0	0	1	0.2718	0.3365	H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	KYSE510_OESOPHAGUS	0	1	0.6083	TRUE	0	0	0	2	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	TIMM23--RP11-464F9.1	27	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	349	11	0.08	0.72	0.3495	0.0259	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KYSE510_OESOPHAGUS	0.08	0.72	0.3754	TRUE	519	3926	326	965	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	IKBKAP--MRRF	21	24	IKBKAP	10385	chr9:111678484:-	MRRF	42994	chr9:125042722:+	ONLY_REF_SPLICE	YES	102	255	0.31	0.15	0.2718	0.3106	{Klijn_CCL:Head-Neck=1},IKBKAP->chr9:111629797-111696396:-,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_complex-associated_protein,MRRF->chr9:125026882-125085743:+,mitochondrial_ribosome_recycling_factor	KYSE510_OESOPHAGUS	0.15	0.31	0.5824	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	MT-TA--MT-TC	23	8	MT-TA	1053	chrM:5603:-	MT-TC	4081	chrM:5815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2977	0.1035	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE510_OESOPHAGUS	1	1	0.4012	FALSE	462	80	0	856	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	PKD1P5--NOMO2	23	4	PKD1P5	1357	chr16:18495441:-	NOMO2	30506	chr16:18569113:-	ONLY_REF_SPLICE	YES	3	181	0.9	0.13	0.2977	0.0518	LOCAL_REARRANGEMENT:-:[15385],PKD1P5->chr16:18458147-18495797:-,polycystin_1,_transient_receptor_potential_channel_interacting_pseudogene_5,NOMO2->NODAL_modulator_2,chr16:18511182-18573533:-	KYSE510_OESOPHAGUS	0.13	0.9	0.3495	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	21	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15599	5	0	0.81	0.2718	0.0129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	0.81	0.2847	FALSE	230	193	14	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	GLI3--MRPL48	16	14	GLI3	15958	chr7:42063067:-	MRPL48	34345	chr11:73516072:+	ONLY_REF_SPLICE	YES	16	119	0.65	0.2	0.2071	0.1812	{Klijn_CCL:Head-Neck=1},GLI3->GLI_family_zinc_finger_3,Oncogene{Bushman},chr7:42000548-42277469:-,MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48	KYSE510_OESOPHAGUS	0.2	0.65	0.3883	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	ZNF654--HMGB2	19	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2459	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KYSE510_OESOPHAGUS	1	1	0.2459	TRUE	0	0	0	518	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	GRWD1--GRIN2D	5	50	GRWD1	2071	chr19:48950100:+	GRIN2D	22390	chr19:48945030:+	INCL_NON_REF_SPLICE	YES	285	3	0.16	0.95	0.0647	0.6472	LOCAL_REARRANGEMENT:+:[842],GRWD1->chr19:48949030-48960279:+,glutamate-rich_WD_repeat_containing_1,GRIN2D->Oncogene{Bushman},chr19:48898132-48948188:+,glutamate_ionotropic_receptor_NMDA_type_subunit_2D	KYSE510_OESOPHAGUS	0.16	0.95	0.7119	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	C15orf57--CBX3	11	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	37	52	0.39	0.32	0.1424	0.1683	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KYSE510_OESOPHAGUS	0.32	0.39	0.3107	TRUE	267	562	48	632	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	14	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15740	10	0	0.6	0.1812	0.0129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	0.6	0.1941	FALSE	230	198	14	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	HSPBP1--GRK5	13	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1683	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KYSE510_OESOPHAGUS	1	1	0.1683	TRUE	1	39	0	134	39	FALSE	ACH-000824
KYSE510_OESOPHAGUS	PRR18--ATP5G3	12	0	PRR18	1186	chr6:166721751:-	ATP5G3	9669	chr2:176046436:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1553	0	PRR18->chr6:166719168-166721936:-,proline_rich_18,ATP5G3->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C3_(subunit_9),chr2:176040986-176049335:-	KYSE510_OESOPHAGUS	1	1	0.1553	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	NRIP1--AF127936.7	11	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.1424	0.0259	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE510_OESOPHAGUS	0.93	1	0.1683	FALSE	292	1546	117	613	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ATP6--MT-CO1	10	3	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13979	28145	0	0	0.1294	0.0388	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE510_OESOPHAGUS	0	0	0.1682	FALSE	183	104	9	328	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	PDE6B--PPP2R2D	10	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1294	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	KYSE510_OESOPHAGUS	1	1	0.1294	TRUE	7	65	3	22	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	HSP90AB1--MT-RNR2	9	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	5728	0	0	1	0.1165	0.0388	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KYSE510_OESOPHAGUS	0	1	0.1553	FALSE	13	9	0	364	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	SLC1A5--MT-ND4L	9	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1165	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE510_OESOPHAGUS	1	1	0.1165	FALSE	0	0	0	189	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ATP6--MT-CO1	8	3	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	14470	27683	0	0	0.1035	0.0388	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE510_OESOPHAGUS	0	0	0.1423	FALSE	183	104	9	328	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	RP11-123O10.4--GRIP1	7	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0906	0.0777	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYSE510_OESOPHAGUS	1	1	0.1683	FALSE	416	2512	207	587	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	4	16	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	2	0	0.91	1	0.0518	0.2071	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0.91	1	0.2589	FALSE	209	205	15	279	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	8	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1035	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	1	1	0.1035	FALSE	231	205	14	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	PDE6B--PPP2R2D	8	0	PDE6B	1510	chr4:619882:+	PPP2R2D	25830	chr10:133753533:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1035	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	KYSE510_OESOPHAGUS	1	1	0.1035	TRUE	5	45	2	9	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	HSP90AB1--MT-RNR2	7	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	5763	0	0	1	0.0906	0.0388	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KYSE510_OESOPHAGUS	0	1	0.1294	FALSE	13	9	0	364	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	6	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0777	0.0906	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE510_OESOPHAGUS	1	1	0.1683	FALSE	407	2205	196	549	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ATP6--MT-CO1	5	9	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4565	28993	0	0	0.0647	0.1165	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE510_OESOPHAGUS	0	0	0.1812	FALSE	183	104	9	328	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	4	13	MT-ND4	1773	chrM:11532:+	MT-ATP8	5407	chrM:8394:+	INCL_NON_REF_SPLICE	YES	23073	0	0	1	0.0518	0.1683	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	1	0.2201	FALSE	231	217	16	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	6	5	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	26305	774	0	0.01	0.0777	0.0647	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	0.01	0.1424	FALSE	231	217	16	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MRRF--IKBKAP	3	16	MRRF	3446	chr9:125033354:+	IKBKAP	26565	chr9:111670684:-	ONLY_REF_SPLICE	YES	264	225	0.07	0.08	0.0388	0.2071	{Klijn_CCL:Head-Neck=1},MRRF->chr9:125026882-125085743:+,mitochondrial_ribosome_recycling_factor,IKBKAP->chr9:111629797-111696396:-,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_complex-associated_protein	KYSE510_OESOPHAGUS	0.07	0.08	0.2459	TRUE	0	0	0	1	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	4	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20009	61	0	0.21	0.0518	0.1553	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	0.21	0.2071	FALSE	231	217	16	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	3	16	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1512	0	0.01	1	0.0388	0.2071	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0.01	1	0.2459	FALSE	216	209	16	281	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ATP6--MT-CO1	6	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	14803	28509	0	0	0.0777	0.0388	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE510_OESOPHAGUS	0	0	0.1165	FALSE	183	104	9	328	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	4	11	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	22514	0	0	1	0.0518	0.1424	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	1	0.1942	FALSE	231	217	16	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	PTGES3--MT-ND4L	6	3	PTGES3	1363	chr12:57081797:-	MT-ND4L	12459	chrM:10471:+	INCL_NON_REF_SPLICE	YES	3241	0	0	1	0.0777	0.0388	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE510_OESOPHAGUS	0	1	0.1165	FALSE	0	0	0	4	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	RP11-680G10.1--GSE1	6	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	67	1	0.12	0.0777	0.0388	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE510_OESOPHAGUS	0.12	1	0.1165	TRUE	465	1949	224	605	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	6	2	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	25108	537	0	0.01	0.0777	0.0259	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	0.01	0.1036	FALSE	231	217	16	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	5	6	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	23003	1604	0	0.01	0.0647	0.0777	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	0.01	0.1424	FALSE	231	217	16	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	6	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15599	10	0	0.41	0.0777	0.0129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	0.41	0.0906	FALSE	230	193	14	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	6	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18875	10	0	0.41	0.0777	0.0129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	0.41	0.0906	FALSE	231	205	14	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ATP6--MT-CO1	5	3	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	14726	24985	0	0	0.0647	0.0388	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE510_OESOPHAGUS	0	0	0.1035	FALSE	183	104	9	328	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0518	0.0906	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE510_OESOPHAGUS	0.92	1	0.1424	FALSE	192	492	57	212	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ATP6--MT-CO1	3	9	MT-ATP6	1537	chrM:9063:+	MT-CO1	5319	chrM:6541:+	INCL_NON_REF_SPLICE	YES	6286	27672	0	0	0.0388	0.1165	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE510_OESOPHAGUS	0	0	0.1553	FALSE	183	104	9	328	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	5	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15740	61	0	0.09	0.0647	0.0129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	0.09	0.0776	FALSE	230	198	14	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	3	9	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	23073	10	0	0.55	0.0388	0.1165	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	0.55	0.1553	FALSE	231	217	16	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MRRF--IKBKAP	5	0	MRRF	1336	chr9:125027217:+	IKBKAP	24163	chr9:111674774:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0647	0	{Klijn_CCL:Head-Neck=1},MRRF->chr9:125026882-125085743:+,mitochondrial_ribosome_recycling_factor,IKBKAP->chr9:111629797-111696396:-,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_complex-associated_protein	KYSE510_OESOPHAGUS	1	1	0.0647	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	5	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0647	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	1	1	0.0647	FALSE	231	204	14	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	4	4	MT-ND4	1285	chrM:11044:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	19010	0	0	1	0.0518	0.0518	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	1	0.1036	FALSE	231	205	14	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	PRR18--ATP5G3	5	0	PRR18	1186	chr6:166721751:-	ATP5G3	9695	chr2:176046410:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0647	0	PRR18->chr6:166719168-166721936:-,proline_rich_18,ATP5G3->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C3_(subunit_9),chr2:176040986-176049335:-	KYSE510_OESOPHAGUS	1	1	0.0647	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	3	7	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	23695	0	0	1	0.0388	0.0906	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	1	0.1294	FALSE	231	217	16	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	3	7	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	23528	0	0	1	0.0388	0.0906	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	1	0.1294	FALSE	231	217	16	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	3	7	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	23472	0	0	1	0.0388	0.0906	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	1	0.1294	FALSE	231	217	16	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ATP6--MT-CO1	3	6	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	17846	28145	0	0	0.0388	0.0777	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE510_OESOPHAGUS	0	0	0.1165	FALSE	183	104	9	328	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	4	1	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	15671	0	0	1	0.0518	0.0129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	1	0.0647	FALSE	230	197	14	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	4	1	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	22715	1604	0	0	0.0518	0.0129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	0	0.0647	FALSE	231	205	14	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	HSPBP1--GRK5	4	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KYSE510_OESOPHAGUS	1	1	0.0518	TRUE	1	39	0	134	39	FALSE	ACH-000824
KYSE510_OESOPHAGUS	HSPBP1--GRK5	4	0	HSPBP1	1855	chr19:55790895:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KYSE510_OESOPHAGUS	1	1	0.0518	TRUE	1	39	0	134	39	FALSE	ACH-000824
KYSE510_OESOPHAGUS	CTTN--MT-ND4L	3	3	CTTN	20589	chr11:70282018:+	MT-ND4L	24277	chrM:10485:+	INCL_NON_REF_SPLICE	YES	7231	0	0	1	0.0388	0.0388	CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE510_OESOPHAGUS	0	1	0.0776	FALSE	0	0	0	1	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	FTL--MT-CO1	3	3	FTL	1134	chr19:49468691:+	MT-CO1	6232	chrM:6557:+	INCL_NON_REF_SPLICE	YES	5886	28993	0	0	0.0388	0.0388	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE510_OESOPHAGUS	0	0	0.0776	FALSE	0	7	0	14	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	FTL--MT-CO1	3	3	FTL	1122	chr19:49468679:+	MT-CO1	6221	chrM:6546:+	INCL_NON_REF_SPLICE	YES	1679	28145	0	0	0.0388	0.0388	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE510_OESOPHAGUS	0	0	0.0776	FALSE	0	7	0	14	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ATP6--MT-CO1	3	3	MT-ATP6	1112	chrM:8638:+	MT-CO1	5325	chrM:6547:+	INCL_NON_REF_SPLICE	YES	14124	28259	0	0	0.0388	0.0388	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE510_OESOPHAGUS	0	0	0.0776	FALSE	183	104	9	328	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MT-ND4--MT-ATP8	3	3	MT-ND4	1294	chrM:11053:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	20199	3	0	0.67	0.0388	0.0388	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE510_OESOPHAGUS	0	0.67	0.0776	FALSE	231	205	14	283	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	GLI3--MRPL48	1	9	GLI3	15958	chr7:42063067:-	MRPL48	38624	chr11:73536753:+	ONLY_REF_SPLICE	YES	16	306	0.38	0.03	0.0129	0.1165	{Klijn_CCL:Head-Neck=1},GLI3->GLI_family_zinc_finger_3,Oncogene{Bushman},chr7:42000548-42277469:-,MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48	KYSE510_OESOPHAGUS	0.03	0.38	0.1294	TRUE	0	0	0	1	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	GLI3--MRPL48	2	5	GLI3	15958	chr7:42063067:-	MRPL48	41968	chr11:73555852:+	ONLY_REF_SPLICE	YES	16	255	0.3	0.03	0.0259	0.0647	{Klijn_CCL:Head-Neck=1},GLI3->GLI_family_zinc_finger_3,Oncogene{Bushman},chr7:42000548-42277469:-,MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48	KYSE510_OESOPHAGUS	0.03	0.3	0.0906	TRUE	0	0	0	1	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	HSPBP1--GRK5	3	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KYSE510_OESOPHAGUS	1	1	0.0388	TRUE	1	39	0	134	39	FALSE	ACH-000824
KYSE510_OESOPHAGUS	SIN3A--METTL13	3	0	SIN3A	10699	chr15:75715041:-	METTL13	42708	chr1:171753590:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	SIN3A->SIN3_transcription_regulator_family_member_A,chr15:75661720-75748183:-,METTL13->chr1:171750788-171783163:+,methyltransferase_like_13	KYSE510_OESOPHAGUS	1	1	0.0388	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	NRIP1--AF127936.7	2	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	11	0	0.31	1	0.0259	0.0388	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE510_OESOPHAGUS	0.31	1	0.0647	FALSE	164	806	69	479	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.24	1	0.0259	0.0259	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE510_OESOPHAGUS	0.24	1	0.0518	FALSE	125	705	46	456	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	89	0.5	0.04	0.0259	0.0259	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KYSE510_OESOPHAGUS	0.04	0.5	0.0518	FALSE	16	356	14	466	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	SAMD12--EXT1	2	1	SAMD12	1192	chr8:119634043:-	EXT1	31251	chr8:118825200:-	ONLY_REF_SPLICE	YES	111	1335	0.03	0	0.0259	0.0129	NEIGHBORS[77606],SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1	KYSE510_OESOPHAGUS	0	0.03	0.0388	FALSE	0	0	0	1	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MYL12A--TGIF1	2	0	MYL12A	1429	chr18:3247907:+	TGIF1	23110	chr18:3456352:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	MYL12A->chr18:3247479-3256234:+,myosin_light_chain_12A,TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+	KYSE510_OESOPHAGUS	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0129	0.0518	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE510_OESOPHAGUS	0.83	1	0.0647	FALSE	515	4851	409	746	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	RP4-756H11.3--IRX2	2	0	RP4-756H11.3	1089	chr7:66119613:+	IRX2	12216	chr5:2749901:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	RP4-756H11.3->chr7:66119525-66134842:+,IRX2->chr5:2745959-2752969:-,iroquois_homeobox_2	KYSE510_OESOPHAGUS	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	KYSE510_OESOPHAGUS	1	1	0.0259	TRUE	53	396	64	110	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	SPIN1--GNAS	2	0	SPIN1	1120	chr9:91003453:+	GNAS	33527	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	GTEx&tcga_normals:1/3694=0.03%,SPIN1->chr9:91003334-91093609:+,spindlin_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	KYSE510_OESOPHAGUS	1	1	0.0259	TRUE	0	1	0	4	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	PDK1--RP11-127H5.1	1	3	PDK1	13815	chr2:173460751:+	RP11-127H5.1	40433	chr8:106258521:+	ONLY_REF_SPLICE	YES	22	0	0.15	1	0.0129	0.0388	PDK1->ArcherDX_panel,FoundationOne_panel,chr2:173420101-173489823:+,pyruvate_dehydrogenase_kinase_1,RP11-127H5.1->chr8:105602961-106431488:+	KYSE510_OESOPHAGUS	0.15	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000824
KYSE510_OESOPHAGUS	RP11-680G10.1--GSE1	1	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	31	1	0.11	0.0129	0.0388	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE510_OESOPHAGUS	0.11	1	0.0517	TRUE	458	1351	185	561	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	PVT1--MYC	1	2	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	NO	774	1186	0	0	0.0129	0.0259	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	KYSE510_OESOPHAGUS	0	0	0.0388	FALSE	3	14	0	24	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	8	26	0.27	0.1	0.0129	0.0259	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KYSE510_OESOPHAGUS	0.1	0.27	0.0388	FALSE	0	5	0	14	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	BPNT1--GGPS1	1	1	BPNT1	9730	chr1:220236099:-	GGPS1	20196	chr1:235498557:+	ONLY_REF_SPLICE	YES	115	285	0.02	0.01	0.0129	0.0129	BPNT1->3'(2'),_5'-bisphosphate_nucleotidase_1,chr1:220230824-220263804:-,GGPS1->chr1:235490665-235507847:+,geranylgeranyl_diphosphate_synthase_1	KYSE510_OESOPHAGUS	0.01	0.02	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	C14orf37--PSMA3	1	1	C14orf37	2258	chr14:58758353:-	PSMA3	25575	chr14:58724463:+	ONLY_REF_SPLICE	YES	0	2853	1	0	0.0129	0.0129	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	KYSE510_OESOPHAGUS	0	1	0.0258	FALSE	0	0	0	2	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	CTTN--CCND1	1	1	CTTN	20421	chr11:70281850:+	CCND1	29129	chr11:69465886:+	ONLY_REF_SPLICE	NO	6814	2352	0	0	0.0129	0.0129	CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	KYSE510_OESOPHAGUS	0	0	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	CTTN--CCND1	1	1	CTTN	5483	chr11:70256066:+	CCND1	29129	chr11:69465886:+	ONLY_REF_SPLICE	YES	5682	2352	0	0	0.0129	0.0129	CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	KYSE510_OESOPHAGUS	0	0	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	FBRSL1--NOC4L	1	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	51	107	0.04	0.02	0.0129	0.0129	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	KYSE510_OESOPHAGUS	0.02	0.04	0.0258	TRUE	3	48	0	26	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	MTF2--FNBP1L	1	1	MTF2	1297	chr1:93545088:+	FNBP1L	21301	chr1:93965025:+	ONLY_REF_SPLICE	NO	197	131	0.01	0.02	0.0129	0.0129	MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2,FNBP1L->chr1:93913688-94020218:+,formin_binding_protein_1_like	KYSE510_OESOPHAGUS	0.01	0.02	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	11	7	0.15	0.22	0.0129	0.0129	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE510_OESOPHAGUS	0.15	0.22	0.0258	FALSE	8	57	1	47	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	SAMD12--EXT1	1	1	SAMD12	4644	chr8:119391799:-	EXT1	32341	chr8:118819616:-	ONLY_REF_SPLICE	YES	153	1251	0.01	0	0.0129	0.0129	NEIGHBORS[77606],SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1	KYSE510_OESOPHAGUS	0	0.01	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000824
KYSE510_OESOPHAGUS	SPIDR--PRKDC	1	1	SPIDR	18759	chr8:48511758:+	PRKDC	107414	chr8:48719887:-	ONLY_REF_SPLICE	YES	209	616	0.01	0	0.0129	0.0129	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[36801],SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide	KYSE510_OESOPHAGUS	0	0.01	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000824
HCC95_LUNG	AKR1C1--AKR1E2	210	39	AKR1C1	6934	chr10:5005720:+	AKR1E2	28363	chr10:4872867:+	ONLY_REF_SPLICE	YES	408	10	0.38	0.96	2.2866	0.4247	DGD_PARALOGS,GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Brain=[count:3=pct:0.5],Blood=[count:1=pct:0.6]},HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[44542],AKR1C1->aldo-keto_reductase_family_1,_member_C1,chr10:4934796-5025475:+,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	HCC95_LUNG	0.38	0.96	2.7113	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	KRT5--KRT13	195	53	KRT5	6489	chr12:52908983:-	KRT13	10456	chr17:39661615:-	INCL_NON_REF_SPLICE	YES	5197	1957	0.05	0.11	2.1233	0.5771	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0.05	0.11	2.7004	TRUE	15	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	CD44--RP11-187C18.4	165	123	CD44	1501	chr11:35160917:+	RP11-187C18.4	30728	chr9:45424634:-	ONLY_REF_SPLICE	YES	6823	0	0.04	1	1.7966	1.3393	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,RP11-187C18.4->chr9:45424050-45424634:-	HCC95_LUNG	0.04	1	3.1359	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	TIMM23B--LINC00843	110	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1977	0.196	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC95_LUNG	1	1	1.3937	TRUE	508	994	45	981	0	FALSE	ACH-000454
HCC95_LUNG	NCOA2--TRAM1	83	23	NCOA2	1106	chr8:71315935:-	TRAM1	45391	chr8:71496028:-	ONLY_REF_SPLICE	YES	3	526	0.97	0.17	0.9038	0.2504	NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,TRAM1->chr8:71485677-71520622:-,translocation_associated_membrane_protein_1	HCC95_LUNG	0.17	0.97	1.1542	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	KRT5--KRT13	63	27	KRT5	1764	chr12:52913708:-	KRT13	10456	chr17:39661615:-	INCL_NON_REF_SPLICE	YES	11424	1957	0.01	0.04	0.686	0.294	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0.01	0.04	0.98	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	TIMM23--RP11-464F9.1	66	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	291	6	0.19	0.92	0.7186	0.0436	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC95_LUNG	0.19	0.92	0.7622	TRUE	519	3926	326	965	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	58	33	KRT5	1764	chr12:52913708:-	KRT13	10309	chr17:39661762:-	INCL_NON_REF_SPLICE	YES	11424	279	0.01	0.25	0.6315	0.3593	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0.01	0.25	0.9908	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	52	19	KRT5	1764	chr12:52913708:-	KRT13	10504	chr17:39661567:-	INCL_NON_REF_SPLICE	YES	11424	2172	0.01	0.03	0.5662	0.2069	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0.01	0.03	0.7731	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	41	49	KRT5	6552	chr12:52908920:-	KRT13	10480	chr17:39661591:-	INCL_NON_REF_SPLICE	YES	1140	1776	0.07	0.05	0.4464	0.5335	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0.05	0.07	0.9799	TRUE	15	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	MT-TA--MT-TC	49	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5335	0.0544	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC95_LUNG	1	1	0.5879	FALSE	462	80	0	856	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	47	11	KRT5	1728	chr12:52913744:-	KRT13	10504	chr17:39661567:-	INCL_NON_REF_SPLICE	YES	10110	2172	0.01	0.03	0.5118	0.1198	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0.01	0.03	0.6316	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	IQGAP1--ZNF774	44	19	IQGAP1	2279	chr15:90934105:+	ZNF774	45234	chr15:90897874:+	ONLY_REF_SPLICE	YES	141	16	0.31	0.8	0.4791	0.2069	LOCAL_REARRANGEMENT:+:[22126],IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,ZNF774->chr15:90895477-90909324:+,zinc_finger_protein_774	HCC95_LUNG	0.31	0.8	0.686	TRUE	0	4	0	2	4	TRUE	ACH-000454
HCC95_LUNG	AKR1C1--AKR1E2	35	43	AKR1C1	6934	chr10:5005720:+	AKR1E2	26099	chr10:4867154:+	ONLY_REF_SPLICE	YES	408	0	0.16	1	0.3811	0.4682	DGD_PARALOGS,GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Brain=[count:3=pct:0.5],Blood=[count:1=pct:0.6]},HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[44542],AKR1C1->aldo-keto_reductase_family_1,_member_C1,chr10:4934796-5025475:+,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	HCC95_LUNG	0.16	1	0.8493	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	PPP2CB--TEX15	40	13	PPP2CB	2987	chr8:30669836:-	TEX15	25598	chr8:30706832:-	ONLY_REF_SPLICE	YES	169	2	0.24	0.96	0.4355	0.1416	LOCAL_REARRANGEMENT:-:[17230],PPP2CB->chr8:30631973-30671830:-,protein_phosphatase_2_catalytic_subunit_beta,TEX15->chr8:30689060-30748122:-,testis_expressed_15	HCC95_LUNG	0.24	0.96	0.5771	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	PPP2R3A--GCNT2	42	5	PPP2R3A	1177	chr3:135684691:+	GCNT2	30894	chr6:10527707:+	ONLY_REF_SPLICE	YES	6	0	0.89	1	0.4573	0.0544	PPP2R3A->chr3:135684515-135866733:+,protein_phosphatase_2_regulatory_subunit_B'',_alpha,GCNT2->chr6:10492456-10629601:+,glucosaminyl_(N-acetyl)_transferase_2,_I-branching_enzyme_(I_blood_group)	HCC95_LUNG	0.89	1	0.5117	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	KRT5--KRT13	29	55	KRT5	6552	chr12:52908920:-	KRT13	10456	chr17:39661615:-	INCL_NON_REF_SPLICE	YES	1140	1957	0.07	0.04	0.3158	0.5989	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0.04	0.07	0.9147	TRUE	15	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	MT-ND4--MT-ND4L	12	85	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	4935	0	0.02	1	0.1307	0.9255	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC95_LUNG	0.02	1	1.0562	FALSE	344	827	44	306	0	FALSE	ACH-000454
HCC95_LUNG	MT-ND4--MT-ND4L	4	117	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	22	1	0.85	0.99	0.0436	1.274	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC95_LUNG	0.85	0.99	1.3176	FALSE	344	826	44	306	0	FALSE	ACH-000454
HCC95_LUNG	MT-ND4--MT-ND4L	4	116	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	29	1	0.81	0.99	0.0436	1.2631	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC95_LUNG	0.81	0.99	1.3067	FALSE	344	826	44	306	0	FALSE	ACH-000454
HCC95_LUNG	MT-ND4--MT-ND4L	4	115	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	14	0	0.89	1	0.0436	1.2522	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC95_LUNG	0.89	1	1.2958	FALSE	344	826	44	306	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	28	13	KRT5	1728	chr12:52913744:-	KRT13	10480	chr17:39661591:-	INCL_NON_REF_SPLICE	YES	10110	1776	0	0.02	0.3049	0.1416	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.02	0.4465	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	24	20	KRT5	1764	chr12:52913708:-	KRT13	10492	chr17:39661579:-	INCL_NON_REF_SPLICE	YES	11424	1870	0	0.02	0.2613	0.2178	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.02	0.4791	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	C15orf57--CBX3	25	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	82	50	0.32	0.43	0.2722	0.1416	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC95_LUNG	0.32	0.43	0.4138	TRUE	267	562	48	632	0	FALSE	ACH-000454
HCC95_LUNG	RP11-123O10.4--GRIP1	26	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2831	0.0653	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC95_LUNG	1	1	0.3484	FALSE	416	2512	207	587	0	FALSE	ACH-000454
HCC95_LUNG	MT-ND4--MT-ND4L	5	86	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	8	0	0.92	1	0.0544	0.9364	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC95_LUNG	0.92	1	0.9908	FALSE	344	821	44	306	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	21	21	KRT5	1764	chr12:52913708:-	KRT13	10480	chr17:39661591:-	INCL_NON_REF_SPLICE	YES	11424	1776	0	0.02	0.2287	0.2287	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.02	0.4574	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	EPB41L1--NR4A3	25	1	EPB41L1	1372	chr20:34679797:+	NR4A3	50489	chr9:102625902:+	ONLY_REF_SPLICE	YES	11	1	0.7	0.96	0.2722	0.0109	EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,NR4A3->Oncogene{Bushman},chr9:102584137-102629173:+,nuclear_receptor_subfamily_4_group_A_member_3	HCC95_LUNG	0.7	0.96	0.2831	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	KRT5--KRT13	18	25	KRT5	1773	chr12:52913699:-	KRT13	10492	chr17:39661579:-	INCL_NON_REF_SPLICE	YES	11403	1870	0	0.02	0.196	0.2722	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.02	0.4682	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	12	49	KRT5	6558	chr12:52908914:-	KRT13	10480	chr17:39661591:-	INCL_NON_REF_SPLICE	NO	1031	1776	0.06	0.03	0.1307	0.5335	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0.03	0.06	0.6642	TRUE	15	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	10	56	KRT5	6516	chr12:52908956:-	KRT13	10435	chr17:39661636:-	INCL_NON_REF_SPLICE	YES	2635	1773	0.02	0.04	0.1089	0.6098	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0.02	0.04	0.7187	TRUE	15	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	TPM3--C1orf43	21	12	TPM3	6350	chr1:154155464:-	C1orf43	24462	chr1:154187050:-	ONLY_REF_SPLICE	YES	1198	447	0.03	0.07	0.2287	0.1307	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Muscle_-_Skeletal=1},{Klijn_CCL:Kidney=1},LOCAL_REARRANGEMENT:-:[12058],TPM3->Oncogene{Bushman},chr1:154127784-154167124:-,tropomyosin_3,C1orf43->chr1:154179182-154193104:-,chromosome_1_open_reading_frame_43	HCC95_LUNG	0.03	0.07	0.3594	TRUE	0	0	0	1	0	FALSE	ACH-000454
HCC95_LUNG	NCOA2--TRAM1	15	31	NCOA2	2531	chr8:71314398:-	TRAM1	45391	chr8:71496028:-	ONLY_REF_SPLICE	YES	5	526	0.9	0.08	0.1633	0.3375	NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,TRAM1->chr8:71485677-71520622:-,translocation_associated_membrane_protein_1	HCC95_LUNG	0.08	0.9	0.5008	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	KRT5--KRT13	19	14	KRT5	1728	chr12:52913744:-	KRT13	10468	chr17:39661603:-	INCL_NON_REF_SPLICE	YES	10110	1794	0	0.02	0.2069	0.1524	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.02	0.3593	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	ZNF654--HMGB2	22	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2395	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HCC95_LUNG	1	1	0.2395	TRUE	0	0	0	518	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	8	55	KRT5	6558	chr12:52908914:-	KRT13	10456	chr17:39661615:-	INCL_NON_REF_SPLICE	NO	1031	1957	0.06	0.03	0.0871	0.5989	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0.03	0.06	0.686	TRUE	15	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	14	28	KRT5	1773	chr12:52913699:-	KRT13	10468	chr17:39661603:-	INCL_NON_REF_SPLICE	YES	11403	1794	0	0.02	0.1524	0.3049	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.02	0.4573	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	19	3	KRT5	1629	chr12:52913843:-	KRT13	10504	chr17:39661567:-	INCL_NON_REF_SPLICE	NO	9169	2172	0	0.01	0.2069	0.0327	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.2396	FALSE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	LDLRAD3--TEKT4P2	19	1	LDLRAD3	1164	chr11:35965694:+	TEKT4P2	18646	chr21:9966380:-	ONLY_REF_SPLICE	YES	53	6	0.27	0.77	0.2069	0.0109	LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,TEKT4P2->chr21:9907190-9968585:-,tektin_4_pseudogene_2	HCC95_LUNG	0.27	0.77	0.2178	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	KRT5--KRT13	5	55	KRT5	6564	chr12:52908908:-	KRT13	10456	chr17:39661615:-	INCL_NON_REF_SPLICE	YES	1008	1957	0.06	0.03	0.0544	0.5989	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0.03	0.06	0.6533	TRUE	15	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	7	47	KRT5	6501	chr12:52908971:-	KRT13	10480	chr17:39661591:-	INCL_NON_REF_SPLICE	NO	4162	1776	0.01	0.03	0.0762	0.5118	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0.01	0.03	0.588	FALSE	15	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	12	23	KRT5	1764	chr12:52913708:-	KRT13	10468	chr17:39661603:-	INCL_NON_REF_SPLICE	YES	11424	1794	0	0.02	0.1307	0.2504	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.02	0.3811	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	15	10	KRT5	1698	chr12:52913774:-	KRT13	10504	chr17:39661567:-	INCL_NON_REF_SPLICE	YES	9346	2172	0	0.01	0.1633	0.1089	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.2722	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	MT-ND6--MT-TE	17	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1851	0.0218	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC95_LUNG	1	1	0.2069	FALSE	499	1288	110	792	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	5	46	KRT5	6501	chr12:52908971:-	KRT13	10492	chr17:39661579:-	INCL_NON_REF_SPLICE	YES	4162	1870	0.01	0.03	0.0544	0.5009	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0.01	0.03	0.5553	TRUE	15	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	3	53	KRT5	6501	chr12:52908971:-	KRT13	10456	chr17:39661615:-	INCL_NON_REF_SPLICE	NO	4162	1957	0.01	0.03	0.0327	0.5771	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0.01	0.03	0.6098	FALSE	15	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	4	49	KRT5	6501	chr12:52908971:-	KRT13	10468	chr17:39661603:-	INCL_NON_REF_SPLICE	YES	4162	1794	0.01	0.03	0.0436	0.5335	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0.01	0.03	0.5771	TRUE	15	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	12	16	KRT5	1728	chr12:52913744:-	KRT13	10456	chr17:39661615:-	INCL_NON_REF_SPLICE	YES	10110	1957	0	0.01	0.1307	0.1742	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.3049	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	EPB41L1--NR4A3	14	3	EPB41L1	2310	chr20:34680735:+	NR4A3	50489	chr9:102625902:+	ONLY_REF_SPLICE	YES	23	1	0.42	0.94	0.1524	0.0327	EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,NR4A3->Oncogene{Bushman},chr9:102584137-102629173:+,nuclear_receptor_subfamily_4_group_A_member_3	HCC95_LUNG	0.42	0.94	0.1851	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	KRT5--KRT13	9	23	KRT5	1743	chr12:52913729:-	KRT13	10456	chr17:39661615:-	INCL_NON_REF_SPLICE	YES	10745	1957	0	0.02	0.098	0.2504	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.02	0.3484	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--MT-CO3	14	1	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	7148	12344	0	0	0.1524	0.0109	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HCC95_LUNG	0	0	0.1633	FALSE	0	0	0	18	0	FALSE	ACH-000454
HCC95_LUNG	HSP90AB1--MT-RNR2	13	4	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4433	0	0	1	0.1416	0.0436	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC95_LUNG	0	1	0.1852	FALSE	13	9	0	364	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	7	26	KRT5	1773	chr12:52913699:-	KRT13	10480	chr17:39661591:-	INCL_NON_REF_SPLICE	YES	11403	1776	0	0.02	0.0762	0.2831	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.02	0.3593	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	5	34	KRT5	1773	chr12:52913699:-	KRT13	10435	chr17:39661636:-	INCL_NON_REF_SPLICE	YES	11403	1773	0	0.02	0.0544	0.3702	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.02	0.4246	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	5	34	KRT5	1773	chr12:52913699:-	KRT13	10393	chr17:39661678:-	INCL_NON_REF_SPLICE	NO	11403	1755	0	0.02	0.0544	0.3702	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.02	0.4246	FALSE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	NEK7--SYK	13	2	NEK7	1314	chr1:198126406:+	SYK	27173	chr9:93607716:+	ONLY_REF_SPLICE	YES	23	108	0.39	0.12	0.1416	0.0218	NEK7->NIMA_related_kinase_7,chr1:198126093-198291550:+,SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase	HCC95_LUNG	0.12	0.39	0.1634	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	PPP2R3A--GCNT2	13	1	PPP2R3A	1177	chr3:135684691:+	GCNT2	40620	chr6:10621584:+	ONLY_REF_SPLICE	YES	6	10	0.7	0.58	0.1416	0.0109	PPP2R3A->chr3:135684515-135866733:+,protein_phosphatase_2_regulatory_subunit_B'',_alpha,GCNT2->chr6:10492456-10629601:+,glucosaminyl_(N-acetyl)_transferase_2,_I-branching_enzyme_(I_blood_group)	HCC95_LUNG	0.58	0.7	0.1525	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	MT-ND4--MT-ND4L	3	38	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	8	0	0.84	1	0.0327	0.4138	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC95_LUNG	0.84	1	0.4465	FALSE	344	821	44	306	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	8	17	KRT5	1743	chr12:52913729:-	KRT13	10480	chr17:39661591:-	INCL_NON_REF_SPLICE	YES	10745	1776	0	0.01	0.0871	0.1851	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.2722	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	10	9	KRT5	1686	chr12:52913786:-	KRT13	10456	chr17:39661615:-	INCL_NON_REF_SPLICE	YES	9348	1957	0	0.01	0.1089	0.098	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.2069	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	AC007403.2--LRRTM4	11	4	AC007403.2	5504	chr2:67172606:+	LRRTM4	19327	chr2:76976042:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1198	0.0436	AC007403.2->chr2:67131568-67198594:+,LRRTM4->chr2:76974845-77820445:-,leucine_rich_repeat_transmembrane_neuronal_4	HCC95_LUNG	1	1	0.1634	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	MT-ND6--MT-TE	11	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1198	0.0327	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC95_LUNG	1	1	0.1525	FALSE	499	1288	110	792	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	5	25	KRT5	1817	chr12:52913655:-	KRT13	10504	chr17:39661567:-	INCL_NON_REF_SPLICE	YES	10851	2172	0	0.01	0.0544	0.2722	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.3266	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	LDLRAD3--CD44	9	9	LDLRAD3	5673	chr11:36120011:+	CD44	20644	chr11:35201821:+	ONLY_REF_SPLICE	YES	349	7061	0.05	0	0.098	0.098	{Klijn_CCL:Skin=1},LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	HCC95_LUNG	0	0.05	0.196	TRUE	0	0	0	1	0	FALSE	ACH-000454
HCC95_LUNG	MOB1A--SERTAD2	10	5	MOB1A	5351	chr2:74392345:-	SERTAD2	18871	chr2:64864009:-	ONLY_REF_SPLICE	YES	274	20	0.05	0.43	0.1089	0.0544	MOB1A->MOB_kinase_activator_1A,chr2:74379655-74406025:-,SERTAD2->SERTA_domain_containing_2,chr2:64858755-64978139:-	HCC95_LUNG	0.05	0.43	0.1633	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	SYK--ROR2	10	3	SYK	4964	chr9:93607876:+	ROR2	42286	chr9:94325611:-	ONLY_REF_SPLICE	YES	125	0	0.09	1	0.1089	0.0327	PROTCLUST,SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase,ROR2->Oncogene{Bushman},chr9:94325373-94712444:-,receptor_tyrosine_kinase_like_orphan_receptor_2	HCC95_LUNG	0.09	1	0.1416	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	MT-ATP6--MT-CO2	10	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	54	3	0.18	0.8	0.1089	0.0218	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC95_LUNG	0.18	0.8	0.1307	FALSE	59	21	0	114	0	FALSE	ACH-000454
HCC95_LUNG	MT-ND4--MT-ND4L	5	22	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	39	0	0.41	1	0.0544	0.2395	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC95_LUNG	0.41	1	0.2939	FALSE	344	826	44	306	0	FALSE	ACH-000454
HCC95_LUNG	CTNNA1--MATR3	9	5	CTNNA1	17161	chr5:138163407:+	MATR3	42739	chr5:138611810:+	ONLY_REF_SPLICE	YES	579	4	0.02	0.78	0.098	0.0544	GTEx&tcga_normals:1/3694=0.03%,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,MATR3->chr5:138609441-138667360:+,matrin_3	HCC95_LUNG	0.02	0.78	0.1524	TRUE	0	0	0	1	0	FALSE	ACH-000454
HCC95_LUNG	AGPS--HNRNPA3	9	4	AGPS	2496	chr2:178285086:+	HNRNPA3	37869	chr2:178086788:+	INCL_NON_REF_SPLICE	YES	68	138	0.16	0.09	0.098	0.0436	AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+,HNRNPA3->Oncogene{Bushman},chr2:178077291-178088686:+,heterogeneous_nuclear_ribonucleoprotein_A3	HCC95_LUNG	0.09	0.16	0.1416	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	CTD-2008L17.1--RP11-456O19.2	9	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	5	0	0.72	1	0.098	0.0436	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HCC95_LUNG	0.72	1	0.1416	FALSE	20	187	4	79	0	FALSE	ACH-000454
HCC95_LUNG	HSPBP1--GRK5	10	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1089	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HCC95_LUNG	1	1	0.1089	TRUE	1	39	0	134	39	FALSE	ACH-000454
HCC95_LUNG	IQGAP1--ZNF774	8	8	IQGAP1	2279	chr15:90934105:+	ZNF774	47009	chr15:90902083:+	ONLY_REF_SPLICE	YES	141	17	0.1	0.48	0.0871	0.0871	LOCAL_REARRANGEMENT:+:[22126],IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,ZNF774->chr15:90895477-90909324:+,zinc_finger_protein_774	HCC95_LUNG	0.1	0.48	0.1742	TRUE	0	2	0	2	2	TRUE	ACH-000454
HCC95_LUNG	KRT5--KRT13	8	8	KRT5	1686	chr12:52913786:-	KRT13	10492	chr17:39661579:-	INCL_NON_REF_SPLICE	YES	9348	1870	0	0.01	0.0871	0.0871	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.1742	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	BOLA3--AC007403.3	9	2	BOLA3	4895	chr2:74369399:-	AC007403.3	9579	chr2:67268100:+	INCL_NON_REF_SPLICE	YES	178	0	0.06	1	0.098	0.0218	BOLA3->bolA_family_member_3,chr2:74362525-74375121:-,AC007403.3->chr2:67267678-67269098:+	HCC95_LUNG	0.06	1	0.1198	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	RP11-680G10.1--GSE1	9	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	13	1	0.43	0.098	0.0109	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC95_LUNG	0.43	1	0.1089	TRUE	465	1949	224	605	0	FALSE	ACH-000454
HCC95_LUNG	RP5-940J5.9--CAV1	9	1	RP5-940J5.9	1532	chr12:6647005:-	CAV1	7889	chr7:116199077:+	INCL_NON_REF_SPLICE	YES	0	4857	1	0	0.098	0.0109	RP5-940J5.9->chr12:6646960-6647536:-,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	HCC95_LUNG	0	1	0.1089	TRUE	0	0	0	2	0	FALSE	ACH-000454
HCC95_LUNG	RP11-96H19.1--RP11-446N19.1	8	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0871	0.0436	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC95_LUNG	1	1	0.1307	FALSE	467	2173	244	435	0	FALSE	ACH-000454
HCC95_LUNG	LRP8--SLC25A3P1	8	3	LRP8	10422	chr1:53736700:-	SLC25A3P1	32565	chr1:53883338:-	ONLY_REF_SPLICE	YES	96	0	0.1	1	0.0871	0.0327	LOCAL_REARRANGEMENT:-:[85079],LRP8->LDL_receptor_related_protein_8,chr1:53711217-53793742:-,SLC25A3P1->chr1:53878821-53905693:-,solute_carrier_family_25_member_3_pseudogene_1	HCC95_LUNG	0.1	1	0.1198	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	MT-ND6--MT-TE	7	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0762	0.0762	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC95_LUNG	0.88	1	0.1524	FALSE	499	1288	110	792	0	FALSE	ACH-000454
HCC95_LUNG	MT-TA--MT-TC	8	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0871	0.0327	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC95_LUNG	1	1	0.1198	FALSE	462	80	0	856	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	5	13	KRT5	1698	chr12:52913774:-	KRT13	10468	chr17:39661603:-	INCL_NON_REF_SPLICE	YES	9346	1794	0	0.01	0.0544	0.1416	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.196	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	4	17	KRT5	1707	chr12:52913765:-	KRT13	10435	chr17:39661636:-	INCL_NON_REF_SPLICE	YES	9458	1773	0	0.01	0.0436	0.1851	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.2287	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	5	13	KRT5	1689	chr12:52913783:-	KRT13	10435	chr17:39661636:-	INCL_NON_REF_SPLICE	YES	9368	1773	0	0.01	0.0544	0.1416	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.196	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	LAMA5--GATA5	7	5	LAMA5	15448	chr20:60908957:-	GATA5	44453	chr20:61050598:-	ONLY_REF_SPLICE	YES	170	0	0.07	1	0.0762	0.0544	LOCAL_REARRANGEMENT:-:[96185],LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5,GATA5->GATA_binding_protein_5,chr20:61038553-61051026:-	HCC95_LUNG	0.07	1	0.1306	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	MT-ATP6--MT-CO2	8	1	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	49	3	0.16	0.75	0.0871	0.0109	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC95_LUNG	0.16	0.75	0.098	FALSE	59	21	0	114	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	5	12	KRT5	1716	chr12:52913756:-	KRT13	10492	chr17:39661579:-	INCL_NON_REF_SPLICE	YES	9957	1870	0	0.01	0.0544	0.1307	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.1851	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	4	16	KRT5	1716	chr12:52913756:-	KRT13	10456	chr17:39661615:-	INCL_NON_REF_SPLICE	YES	9957	1957	0	0.01	0.0436	0.1742	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.2178	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	4	16	KRT5	1703	chr12:52913769:-	KRT13	10449	chr17:39661622:-	INCL_NON_REF_SPLICE	YES	9373	1904	0	0.01	0.0436	0.1742	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.2178	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	LDLRAD3--PRR5L	7	4	LDLRAD3	5673	chr11:36120011:+	PRR5L	17578	chr11:36317840:+	INCL_NON_REF_SPLICE	YES	349	0	0.03	1	0.0762	0.0436	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	HCC95_LUNG	0.03	1	0.1198	FALSE	0	52	1	15	0	FALSE	ACH-000454
HCC95_LUNG	SYK--MROH3P	7	4	SYK	1107	chr9:93564175:+	MROH3P	28305	chr1:200917220:+	INCL_NON_REF_SPLICE	YES	46	0	0.19	1	0.0762	0.0436	SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase,MROH3P->chr1:200890122-200935658:+,maestro_heat_like_repeat_family_member_3,_pseudogene	HCC95_LUNG	0.19	1	0.1198	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	RP11-782C8.5--ZNF595	7	3	RP11-782C8.5	12334	chr1:143217310:-	ZNF595	21950	chr4:67732:+	ONLY_REF_SPLICE	YES	0	44	1	0.19	0.0762	0.0327	RP11-782C8.5->chr1:143211628-143240439:-,ZNF595->chr4:53179-88099:+,zinc_finger_protein_595	HCC95_LUNG	0.19	1	0.1089	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	TPST1--TRIM47	6	6	TPST1	5907	chr7:65751696:+	TRIM47	16326	chr17:73872894:-	ONLY_REF_SPLICE	YES	36	86	0.25	0.12	0.0653	0.0653	TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,TRIM47->chr17:73870242-73874656:-,tripartite_motif_containing_47	HCC95_LUNG	0.12	0.25	0.1306	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	AC007403.2--AC018462.2	7	1	AC007403.2	5504	chr2:67172606:+	AC018462.2	16407	chr2:62317936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0762	0.0109	AC007403.2->chr2:67131568-67198594:+,AC018462.2->chr2:62296582-62374016:-	HCC95_LUNG	1	1	0.0871	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	KRT5--KRT13	3	17	KRT5	1715	chr12:52913757:-	KRT13	10428	chr17:39661643:-	INCL_NON_REF_SPLICE	YES	9949	1777	0	0.01	0.0327	0.1851	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.2178	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	3	17	KRT5	1721	chr12:52913751:-	KRT13	10437	chr17:39661634:-	INCL_NON_REF_SPLICE	YES	10165	1788	0	0.01	0.0327	0.1851	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.2178	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	HSP90AB1--MT-RNR2	6	4	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4442	0	0	1	0.0653	0.0436	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC95_LUNG	0	1	0.1089	FALSE	13	9	0	364	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	5	8	KRT5	1686	chr12:52913786:-	KRT13	10480	chr17:39661591:-	INCL_NON_REF_SPLICE	YES	9348	1776	0	0.01	0.0544	0.0871	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.1415	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	RP11-96H19.1--RP11-446N19.1	6	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	0	0.71	1	0.0653	0.0436	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC95_LUNG	0.71	1	0.1089	FALSE	515	4851	409	746	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	4	11	KRT5	5027	chr12:52910445:-	KRT13	13422	chr17:39658649:-	INCL_NON_REF_SPLICE	YES	11100	3767	0	0	0.0436	0.1198	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0	0.1634	TRUE	15	0	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	5	7	KRT5	1686	chr12:52913786:-	KRT13	10504	chr17:39661567:-	INCL_NON_REF_SPLICE	YES	9348	2172	0	0.01	0.0544	0.0762	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.1306	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	DOCK4--CALN1	6	2	DOCK4	1310	chr7:111846157:-	CALN1	69651	chr7:71571279:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0653	0.0218	DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,CALN1->calneuron_1,chr7:71244476-71912136:-	HCC95_LUNG	0.89	1	0.0871	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	MT-ATP6--MT-CO2	6	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	54	3	0.13	0.73	0.0653	0.0218	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC95_LUNG	0.13	0.73	0.0871	FALSE	59	21	0	114	0	FALSE	ACH-000454
HCC95_LUNG	MT-ND4--MT-ND4L	5	6	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	95	0	0.1	1	0.0544	0.0653	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC95_LUNG	0.1	1	0.1197	FALSE	344	827	44	306	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	4	8	KRT5	1659	chr12:52913813:-	KRT13	10435	chr17:39661636:-	INCL_NON_REF_SPLICE	YES	8904	1773	0	0.01	0.0436	0.0871	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.1307	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	MT-ATP6--MT-CO1	6	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0653	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC95_LUNG	1	1	0.0653	FALSE	183	104	9	328	0	FALSE	ACH-000454
HCC95_LUNG	MT-ATP6--MT-CO1	6	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0653	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC95_LUNG	1	1	0.0653	FALSE	183	104	9	328	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	3	11	KRT5	1739	chr12:52913733:-	KRT13	10542	chr17:39661529:-	INCL_NON_REF_SPLICE	YES	10479	2931	0	0	0.0327	0.1198	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0	0.1525	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	3	11	KRT5	1686	chr12:52913786:-	KRT13	10408	chr17:39661663:-	INCL_NON_REF_SPLICE	YES	9348	1687	0	0.01	0.0327	0.1198	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.1525	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	SYK--MROH3P	5	2	SYK	1253	chr9:93564321:+	MROH3P	31069	chr1:200926427:+	INCL_NON_REF_SPLICE	YES	103	2	0.06	0.78	0.0544	0.0218	SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase,MROH3P->chr1:200890122-200935658:+,maestro_heat_like_repeat_family_member_3,_pseudogene	HCC95_LUNG	0.06	0.78	0.0762	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	GNGT1--AC002076.10	5	1	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0544	0.0109	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	HCC95_LUNG	0.75	1	0.0653	FALSE	0	10	0	30	0	FALSE	ACH-000454
HCC95_LUNG	AKR1C1--AKR1E2	4	4	AKR1C1	6934	chr10:5005720:+	AKR1E2	30658	chr10:4877867:+	ONLY_REF_SPLICE	YES	408	155	0.02	0.05	0.0436	0.0436	DGD_PARALOGS,GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Brain=[count:3=pct:0.5],Blood=[count:1=pct:0.6]},HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[44542],AKR1C1->aldo-keto_reductase_family_1,_member_C1,chr10:4934796-5025475:+,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	HCC95_LUNG	0.02	0.05	0.0872	TRUE	0	0	0	1	0	FALSE	ACH-000454
HCC95_LUNG	GAPDH--MT-ND4L	4	4	GAPDH	4973	chr12:6647089:+	MT-ND4L	8570	chrM:10618:+	INCL_NON_REF_SPLICE	YES	11448	2638	0	0	0.0436	0.0436	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC95_LUNG	0	0	0.0872	FALSE	0	0	0	3	0	FALSE	ACH-000454
HCC95_LUNG	JUP--EEF1G	5	0	JUP	7190	chr17:39925235:-	EEF1G	26020	chr11:62340142:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	GTEx&tcga_normals:1/3694=0.03%,JUP->chr17:39775692-39943183:-,junction_plakoglobin,EEF1G->chr11:62327073-62342401:-,eukaryotic_translation_elongation_factor_1_gamma	HCC95_LUNG	1	1	0.0544	TRUE	0	0	0	2	0	TRUE	ACH-000454
HCC95_LUNG	KRT5--KRT13	3	8	KRT5	1653	chr12:52913819:-	KRT13	10435	chr17:39661636:-	INCL_NON_REF_SPLICE	YES	8911	1773	0	0.01	0.0327	0.0871	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.1198	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	3	8	KRT5	1668	chr12:52913804:-	KRT13	10408	chr17:39661663:-	INCL_NON_REF_SPLICE	YES	9164	1687	0	0.01	0.0327	0.0871	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0.01	0.1198	TRUE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	MIR205HG--C9orf3	5	0	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0544	0	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	HCC95_LUNG	1	1	0.0544	TRUE	86	303	14	25	0	FALSE	ACH-000454
HCC95_LUNG	MT-ATP6--MT-CO1	5	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC95_LUNG	1	1	0.0544	FALSE	183	104	9	328	0	FALSE	ACH-000454
HCC95_LUNG	MT-ATP6--MT-CO1	5	0	MT-ATP6	1558	chrM:9084:+	MT-CO1	5226	chrM:6448:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC95_LUNG	1	1	0.0544	FALSE	183	104	9	328	0	FALSE	ACH-000454
HCC95_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC95_LUNG	1	1	0.0544	FALSE	499	1288	110	792	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--MT-CO3	4	3	KRT5	1489	chr12:52913983:-	MT-CO3	10505	chrM:9598:+	INCL_NON_REF_SPLICE	YES	7708	11822	0	0	0.0436	0.0327	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HCC95_LUNG	0	0	0.0763	FALSE	0	0	0	18	0	FALSE	ACH-000454
HCC95_LUNG	MT-ATP6--MT-CO2	4	3	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	69	3	0.09	0.7	0.0436	0.0327	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC95_LUNG	0.09	0.7	0.0763	FALSE	59	21	0	114	0	FALSE	ACH-000454
HCC95_LUNG	TPST1--TRIM47	4	3	TPST1	5907	chr7:65751696:+	TRIM47	16647	chr17:73872573:-	ONLY_REF_SPLICE	YES	36	113	0.16	0.06	0.0436	0.0327	TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,TRIM47->chr17:73870242-73874656:-,tripartite_motif_containing_47	HCC95_LUNG	0.06	0.16	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	RB1--ITM2B	4	2	RB1	17872	chr13:48955579:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	99	3156	0.06	0	0.0436	0.0218	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	HCC95_LUNG	0	0.06	0.0654	FALSE	27	49	8	8	0	FALSE	ACH-000454
HCC95_LUNG	SYK--MROH3P	4	2	SYK	1107	chr9:93564175:+	MROH3P	31069	chr1:200926427:+	INCL_NON_REF_SPLICE	YES	46	2	0.12	0.75	0.0436	0.0218	SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase,MROH3P->chr1:200890122-200935658:+,maestro_heat_like_repeat_family_member_3,_pseudogene	HCC95_LUNG	0.12	0.75	0.0654	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	BOLA3--AC007403.3	4	1	BOLA3	3806	chr2:74372316:-	AC007403.3	9544	chr2:67268065:+	INCL_NON_REF_SPLICE	YES	243	0	0.02	1	0.0436	0.0109	BOLA3->bolA_family_member_3,chr2:74362525-74375121:-,AC007403.3->chr2:67267678-67269098:+	HCC95_LUNG	0.02	1	0.0545	TRUE	0	0	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	4	1	KRT5	1548	chr12:52913924:-	KRT13	10480	chr17:39661591:-	INCL_NON_REF_SPLICE	YES	9250	1776	0	0	0.0436	0.0109	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0	0.0545	FALSE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	4	1	KRT5	1509	chr12:52913963:-	KRT13	10492	chr17:39661579:-	INCL_NON_REF_SPLICE	YES	8193	1870	0	0	0.0436	0.0109	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0	0.0545	FALSE	16	3	0	1	0	FALSE	ACH-000454
HCC95_LUNG	RP11-114H23.1--RP11-114H23.2	4	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0.0109	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC95_LUNG	1	1	0.0545	FALSE	81	155	12	160	0	FALSE	ACH-000454
HCC95_LUNG	AP000525.9--LA16c-60G3.6	4	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HCC95_LUNG	1	1	0.0436	TRUE	0	42	0	133	42	FALSE	ACH-000454
HCC95_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC95_LUNG	1	1	0.0436	FALSE	182	97	9	327	0	FALSE	ACH-000454
HCC95_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC95_LUNG	1	1	0.0436	FALSE	344	821	44	306	0	FALSE	ACH-000454
HCC95_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC95_LUNG	1	1	0.0436	FALSE	499	1288	110	792	0	FALSE	ACH-000454
HCC95_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC95_LUNG	1	1	0.0436	FALSE	499	1288	110	792	0	FALSE	ACH-000454
HCC95_LUNG	SYK--MROH3P	3	4	SYK	1253	chr9:93564321:+	MROH3P	28305	chr1:200917220:+	INCL_NON_REF_SPLICE	YES	103	0	0.06	1	0.0327	0.0436	SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase,MROH3P->chr1:200890122-200935658:+,maestro_heat_like_repeat_family_member_3,_pseudogene	HCC95_LUNG	0.06	1	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	TAOK2--RRN3P2	4	0	TAOK2	1286	chr16:29985247:+	RRN3P2	27232	chr16:29102061:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	TAOK2->TAO_kinase_2,chr16:29984962-30003582:+,RRN3P2->RRN3_homolog,_RNA_polymerase_I_transcription_factor_pseudogene_2,chr16:29086163-29128039:+	HCC95_LUNG	1	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	AKR1C1--AKR1E2	2	7	AKR1C1	6934	chr10:5005720:+	AKR1E2	29531	chr10:4875542:+	ONLY_REF_SPLICE	YES	408	77	0.02	0.1	0.0218	0.0762	DGD_PARALOGS,GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Brain=[count:3=pct:0.5],Blood=[count:1=pct:0.6]},HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[44542],AKR1C1->aldo-keto_reductase_family_1,_member_C1,chr10:4934796-5025475:+,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	HCC95_LUNG	0.02	0.1	0.098	TRUE	0	0	0	1	0	FALSE	ACH-000454
HCC95_LUNG	BOLA3--AC007403.3	3	2	BOLA3	4895	chr2:74369399:-	AC007403.3	9544	chr2:67268065:+	INCL_NON_REF_SPLICE	YES	178	0	0.03	1	0.0327	0.0218	BOLA3->bolA_family_member_3,chr2:74362525-74375121:-,AC007403.3->chr2:67267678-67269098:+	HCC95_LUNG	0.03	1	0.0545	TRUE	0	0	0	1	0	FALSE	ACH-000454
HCC95_LUNG	LAMA5--GATA5	3	1	LAMA5	15163	chr20:60909242:-	GATA5	44453	chr20:61050598:-	ONLY_REF_SPLICE	YES	173	0	0.02	1	0.0327	0.0109	LOCAL_REARRANGEMENT:-:[96185],LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5,GATA5->GATA_binding_protein_5,chr20:61038553-61051026:-	HCC95_LUNG	0.02	1	0.0436	TRUE	0	0	0	1	0	FALSE	ACH-000454
HCC95_LUNG	LDLRAD3--CD44	1	9	LDLRAD3	5673	chr11:36120011:+	CD44	19081	chr11:35198122:+	ONLY_REF_SPLICE	YES	349	6912	0.03	0	0.0109	0.098	{Klijn_CCL:Skin=1},LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	HCC95_LUNG	0	0.03	0.1089	TRUE	0	0	0	1	0	FALSE	ACH-000454
HCC95_LUNG	MT-ATP6--MT-CO2	3	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	43	3	0.09	0.57	0.0327	0.0109	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC95_LUNG	0.09	0.57	0.0436	FALSE	59	21	0	114	0	FALSE	ACH-000454
HCC95_LUNG	MT-ATP6--MT-CO2	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	26	2	0.13	0.67	0.0327	0.0109	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC95_LUNG	0.13	0.67	0.0436	FALSE	59	21	0	114	0	FALSE	ACH-000454
HCC95_LUNG	MT-ATP6--MT-CO2	3	1	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	27	3	0.13	0.57	0.0327	0.0109	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC95_LUNG	0.13	0.57	0.0436	FALSE	59	21	0	114	0	FALSE	ACH-000454
HCC95_LUNG	MT-ND4--MT-ND4L	3	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.0109	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC95_LUNG	1	1	0.0436	FALSE	344	821	44	306	0	FALSE	ACH-000454
HCC95_LUNG	NFKBIL1--HCP5	3	1	NFKBIL1	2570	chr6:31516216:+	HCP5	9766	chr6:31430900:+	ONLY_REF_SPLICE	YES	69	0	0.05	1	0.0327	0.0109	LOCAL_REARRANGEMENT:+:[69364],NFKBIL1->NFKB_inhibitor_like_1,chr6:31514647-31526606:+,HCP5->HLA_complex_P5_(non-protein_coding),chr6:31368479-31445283:+	HCC95_LUNG	0.05	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.67	0.0327	0.0109	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC95_LUNG	0.67	1	0.0436	TRUE	458	1351	185	561	0	FALSE	ACH-000454
HCC95_LUNG	STAG1--RP11-731C17.1	3	1	STAG1	1184	chr3:136471037:-	RP11-731C17.1	45584	chr3:136527876:-	INCL_NON_REF_SPLICE	YES	65	0	0.06	1	0.0327	0.0109	LOCAL_REARRANGEMENT:-:[56173],STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,RP11-731C17.1->chr3:136527393-136528465:-	HCC95_LUNG	0.06	1	0.0436	TRUE	0	1	0	2	1	TRUE	ACH-000454
HCC95_LUNG	FTH1--ACTB	3	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HCC95_LUNG	1	1	0.0327	TRUE	1	0	0	97	0	FALSE	ACH-000454
HCC95_LUNG	HSPBP1--GRK5	3	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HCC95_LUNG	1	1	0.0327	TRUE	1	39	0	134	39	FALSE	ACH-000454
HCC95_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC95_LUNG	1	1	0.0327	FALSE	183	104	9	328	0	FALSE	ACH-000454
HCC95_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC95_LUNG	1	1	0.0327	FALSE	183	104	9	328	0	FALSE	ACH-000454
HCC95_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1136	chrM:8662:+	MT-CO1	5337	chrM:6559:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC95_LUNG	1	1	0.0327	FALSE	183	104	9	328	0	FALSE	ACH-000454
HCC95_LUNG	MT-CO3--MT-ATP8	3	0	MT-CO3	1140	chrM:9346:+	MT-ATP8	4859	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC95_LUNG	1	1	0.0327	FALSE	16	100	1	11	0	FALSE	ACH-000454
HCC95_LUNG	MT-CO3--MT-ATP8	3	0	MT-CO3	1123	chrM:9329:+	MT-ATP8	4843	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC95_LUNG	1	1	0.0327	FALSE	16	100	1	11	0	FALSE	ACH-000454
HCC95_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC95_LUNG	1	1	0.0327	FALSE	499	1288	110	792	0	FALSE	ACH-000454
HCC95_LUNG	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC95_LUNG	1	1	0.0327	FALSE	462	80	0	856	0	FALSE	ACH-000454
HCC95_LUNG	RP11-123O10.4--GRIP1	2	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0.0327	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC95_LUNG	1	1	0.0545	FALSE	93	270	15	244	0	FALSE	ACH-000454
HCC95_LUNG	KRT5--KRT13	2	2	KRT5	2742	chr12:52912730:-	KRT13	12376	chr17:39659695:-	ONLY_REF_SPLICE	YES	10401	4841	0	0	0.0218	0.0218	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:16=pct:4.0],Vagina=[count:2=pct:3.6]},GTEx_v2:{count=5;pct=0.06%;dist=Esophagus_-_Mucosa=4,Vagina=1},KRT5->chr12:52908359-52914471:-,keratin_5,KRT13->chr17:39657233-39661957:-,keratin_13	HCC95_LUNG	0	0	0.0436	FALSE	7	1	0	1	0	FALSE	ACH-000454
HCC95_LUNG	LDLRAD3--CD44	1	6	LDLRAD3	5673	chr11:36120011:+	CD44	21778	chr11:35208379:+	ONLY_REF_SPLICE	YES	349	7779	0.02	0	0.0109	0.0653	{Klijn_CCL:Skin=1},LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	HCC95_LUNG	0	0.02	0.0762	FALSE	0	0	0	1	0	FALSE	ACH-000454
HCC95_LUNG	NAV1--LYST	2	2	NAV1	23314	chr1:201763705:+	LYST	107661	chr1:235866277:-	ONLY_REF_SPLICE	YES	17	2	0.19	0.67	0.0218	0.0218	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator	HCC95_LUNG	0.19	0.67	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	PPP2R3A--GCNT2	2	2	PPP2R3A	1177	chr3:135684691:+	GCNT2	32051	chr6:10528864:+	ONLY_REF_SPLICE	NO	6	18	0.4	0.18	0.0218	0.0218	PPP2R3A->chr3:135684515-135866733:+,protein_phosphatase_2_regulatory_subunit_B'',_alpha,GCNT2->chr6:10492456-10629601:+,glucosaminyl_(N-acetyl)_transferase_2,_I-branching_enzyme_(I_blood_group)	HCC95_LUNG	0.18	0.4	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	AC007880.1--MOB1A	2	1	AC007880.1	3888	chr2:65074931:-	MOB1A	15103	chr2:74386381:-	ONLY_REF_SPLICE	YES	1	269	0.75	0.01	0.0218	0.0109	AC007880.1->chr2:65073264-65090760:-,MOB1A->MOB_kinase_activator_1A,chr2:74379655-74406025:-	HCC95_LUNG	0.01	0.75	0.0327	FALSE	0	0	0	1	0	FALSE	ACH-000454
HCC95_LUNG	FLNA--GAPDH	1	5	FLNA	18117	chrX:153580549:-	GAPDH	25658	chr12:6643976:+	ONLY_REF_SPLICE	YES	1010	70	0.01	0.08	0.0109	0.0544	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.11%,FLNA->chrX:153576892-153603006:-,filamin_A,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	HCC95_LUNG	0.01	0.08	0.0653	FALSE	0	0	0	2	0	FALSE	ACH-000454
HCC95_LUNG	GATS--PILRB	2	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	90	139	0.03	0.02	0.0218	0.0109	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	HCC95_LUNG	0.02	0.03	0.0327	TRUE	57	41	2	35	0	FALSE	ACH-000454
HCC95_LUNG	LRP8--SLC25A3P1	1	5	LRP8	10422	chr1:53736700:-	SLC25A3P1	29551	chr1:53904721:-	ONLY_REF_SPLICE	YES	96	12	0.06	0.33	0.0109	0.0544	LOCAL_REARRANGEMENT:-:[85079],LRP8->LDL_receptor_related_protein_8,chr1:53711217-53793742:-,SLC25A3P1->chr1:53878821-53905693:-,solute_carrier_family_25_member_3_pseudogene_1	HCC95_LUNG	0.06	0.33	0.0653	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	RP11-711M9.1--AC007880.1	2	1	RP11-711M9.1	1181	chr2:74213833:+	AC007880.1	6924	chr2:65076681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0.0109	RP11-711M9.1->chr2:74213653-74220867:+,AC007880.1->chr2:65073264-65090760:-	HCC95_LUNG	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0109	0.0544	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC95_LUNG	1	1	0.0653	FALSE	192	492	57	212	0	FALSE	ACH-000454
HCC95_LUNG	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.6	1	0.0109	0.0544	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC95_LUNG	0.6	1	0.0653	FALSE	407	2205	196	549	0	FALSE	ACH-000454
HCC95_LUNG	SYK--MROH3P	2	1	SYK	1107	chr9:93564175:+	MROH3P	33824	chr1:200929460:+	ONLY_REF_SPLICE	YES	46	4	0.06	0.43	0.0218	0.0109	SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase,MROH3P->chr1:200890122-200935658:+,maestro_heat_like_repeat_family_member_3,_pseudogene	HCC95_LUNG	0.06	0.43	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	TES--CAV1	2	1	TES	1242	chr7:115850788:+	CAV1	16985	chr7:116199000:+	ONLY_REF_SPLICE	YES	320	5346	0.01	0	0.0218	0.0109	{Klijn_CCL:Lung=1,Head-Neck=1},TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	HCC95_LUNG	0	0.01	0.0327	FALSE	1	1	1	3	0	FALSE	ACH-000454
HCC95_LUNG	CELF1--C9orf3	2	0	CELF1	9302	chr11:47521005:-	C9orf3	58942	chr9:97783960:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	HCC95_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	CENPK--IVNS1ABP	2	0	CENPK	14117	chr5:64817302:-	IVNS1ABP	25459	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	CENPK->centromere_protein_K,chr5:64813593-64858998:-,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	HCC95_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	CTNNA1--MATR3	2	0	CTNNA1	17161	chr5:138163407:+	MATR3	58734	chr5:138650364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx&tcga_normals:1/3694=0.03%,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,MATR3->chr5:138609441-138667360:+,matrin_3	HCC95_LUNG	1	1	0.0218	TRUE	0	0	0	6	0	TRUE	ACH-000454
HCC95_LUNG	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	HCC95_LUNG	1	1	0.0218	TRUE	0	9	0	44	1	FALSE	ACH-000454
HCC95_LUNG	G3BP1--CTD-2410N18.5	2	0	G3BP1	1992	chr5:151151597:+	CTD-2410N18.5	27988	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTD-2410N18.5->chr5:133502861-133561762:-	HCC95_LUNG	1	1	0.0218	TRUE	0	0	0	4	0	TRUE	ACH-000454
HCC95_LUNG	LDLRAD3--CD44	2	0	LDLRAD3	1164	chr11:35965694:+	CD44	35840	chr11:35236399:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	{Klijn_CCL:Skin=1},LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	HCC95_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	UBA2--PDCD2L	2	0	UBA2	1219	chr19:34919475:+	PDCD2L	27389	chr19:34912424:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	LOCAL_REARRANGEMENT:+:[2184],UBA2->chr19:34919257-34960853:+,ubiquitin_like_modifier_activating_enzyme_2,PDCD2L->chr19:34895289-34917073:+,programmed_cell_death_2-like	HCC95_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	CTD-2008L17.1--RP11-456O19.2	1	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0109	0.0327	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HCC95_LUNG	0.44	1	0.0436	FALSE	33	240	4	98	0	FALSE	ACH-000454
HCC95_LUNG	CTC-786C10.1--GSE1	1	2	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	YES	1	13	0.75	0.19	0.0109	0.0218	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC95_LUNG	0.19	0.75	0.0327	TRUE	2	3	0	21	0	FALSE	ACH-000454
HCC95_LUNG	LDLRAD3--CD44	1	2	LDLRAD3	5673	chr11:36120011:+	CD44	32244	chr11:35229652:+	ONLY_REF_SPLICE	YES	349	9250	0.01	0	0.0109	0.0218	{Klijn_CCL:Skin=1},LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	HCC95_LUNG	0	0.01	0.0327	FALSE	0	1	0	1	0	FALSE	ACH-000454
HCC95_LUNG	RP11-476K15.1--CTD-2015H3.2	1	2	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0109	0.0218	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HCC95_LUNG	1	1	0.0327	FALSE	0	46	0	73	0	FALSE	ACH-000454
HCC95_LUNG	SYK--MROH3P	1	2	SYK	1253	chr9:93564321:+	MROH3P	28910	chr1:200917825:+	ONLY_REF_SPLICE	YES	103	2	0.03	0.6	0.0109	0.0218	SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase,MROH3P->chr1:200890122-200935658:+,maestro_heat_like_repeat_family_member_3,_pseudogene	HCC95_LUNG	0.03	0.6	0.0327	TRUE	0	0	0	1	0	FALSE	ACH-000454
HCC95_LUNG	CPSF6--C9orf3	1	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	NO	159	682	0.01	0	0.0109	0.0109	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	HCC95_LUNG	0	0.01	0.0218	FALSE	53	99	2	44	0	FALSE	ACH-000454
HCC95_LUNG	DGUOK--AC007040.11	1	1	DGUOK	3426	chr2:74166149:+	AC007040.11	17522	chr2:71175505:-	ONLY_REF_SPLICE	YES	423	0	0	1	0.0109	0.0109	DGUOK->chr2:74153953-74186088:+,deoxyguanosine_kinase,AC007040.11->chr2:71166448-71222466:-	HCC95_LUNG	0	1	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000454
HCC95_LUNG	DGUOK--AC007040.11	1	1	DGUOK	4614	chr2:74174033:+	AC007040.11	17522	chr2:71175505:-	ONLY_REF_SPLICE	YES	272	0	0.01	1	0.0109	0.0109	DGUOK->chr2:74153953-74186088:+,deoxyguanosine_kinase,AC007040.11->chr2:71166448-71222466:-	HCC95_LUNG	0.01	1	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000454
HCC95_LUNG	EML6--DCTN1	1	1	EML6	2760	chr2:54952395:+	DCTN1	61838	chr2:74605372:-	ONLY_REF_SPLICE	NO	2	20	0.5	0.09	0.0109	0.0109	EML6->chr2:54950636-55199157:+,echinoderm_microtubule_associated_protein_like_6,DCTN1->chr2:74588281-74619214:-,dynactin_subunit_1	HCC95_LUNG	0.09	0.5	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	EPB41L1--NR4A3	1	1	EPB41L1	1109	chr20:34679534:+	NR4A3	50489	chr9:102625902:+	ONLY_REF_SPLICE	YES	5	1	0.29	0.67	0.0109	0.0109	EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,NR4A3->Oncogene{Bushman},chr9:102584137-102629173:+,nuclear_receptor_subfamily_4_group_A_member_3	HCC95_LUNG	0.29	0.67	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000454
HCC95_LUNG	GNGT1--AC002076.10	1	1	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	NO	2	0	0.5	1	0.0109	0.0109	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	HCC95_LUNG	0.5	1	0.0218	FALSE	0	28	0	37	0	FALSE	ACH-000454
HCC95_LUNG	LDLRAD3--CD44	1	1	LDLRAD3	1164	chr11:35965694:+	CD44	19081	chr11:35198122:+	ONLY_REF_SPLICE	YES	53	6912	0.04	0	0.0109	0.0109	{Klijn_CCL:Skin=1},LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	HCC95_LUNG	0	0.04	0.0218	FALSE	0	1	0	2	1	FALSE	ACH-000454
HCC95_LUNG	MIR205HG--PANK2	1	1	MIR205HG	4006	chr1:209605170:+	PANK2	16617	chr20:3899318:+	ONLY_REF_SPLICE	YES	783	144	0	0.01	0.0109	0.0109	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2	HCC95_LUNG	0	0.01	0.0218	FALSE	0	15	0	5	1	FALSE	ACH-000454
HCC95_LUNG	MTX2--NFE2L2	1	1	MTX2	1275	chr2:177134397:+	NFE2L2	25995	chr2:178098999:-	ONLY_REF_SPLICE	YES	253	376	0.01	0.01	0.0109	0.0109	MTX2->chr2:177134123-177202753:+,metaxin_2,NFE2L2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:178092323-178257425:-,nuclear_factor,_erythroid_2_like_2	HCC95_LUNG	0.01	0.01	0.0218	FALSE	0	1	0	2	0	FALSE	ACH-000454
HCC95_LUNG	MYO19--SLC7A5	1	1	MYO19	10379	chr17:34871701:-	SLC7A5	43065	chr16:87866631:-	ONLY_REF_SPLICE	YES	184	3553	0.01	0	0.0109	0.0109	MYO19->chr17:34851477-34899284:-,myosin_XIX,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	HCC95_LUNG	0	0.01	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000454
HCC95_LUNG	RB1--ITM2B	1	1	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	62	3156	0.03	0	0.0109	0.0109	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	HCC95_LUNG	0	0.03	0.0218	FALSE	53	73	8	19	0	FALSE	ACH-000454
HCC95_LUNG	SYK--MROH3P	1	1	SYK	1253	chr9:93564321:+	MROH3P	34926	chr1:200934159:+	ONLY_REF_SPLICE	YES	103	9	0.02	0.18	0.0109	0.0109	SYK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:93564069-93660831:+,spleen_tyrosine_kinase,MROH3P->chr1:200890122-200935658:+,maestro_heat_like_repeat_family_member_3,_pseudogene	HCC95_LUNG	0.02	0.18	0.0218	TRUE	0	0	0	1	0	FALSE	ACH-000454
HCC95_LUNG	TES--CAV1	1	1	TES	3551	chr7:115874673:+	CAV1	16985	chr7:116199000:+	ONLY_REF_SPLICE	YES	312	5346	0.01	0	0.0109	0.0109	{Klijn_CCL:Lung=1,Head-Neck=1},TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	HCC95_LUNG	0	0.01	0.0218	FALSE	0	1	0	2	0	FALSE	ACH-000454
HCC95_LUNG	ZCCHC14--KLHDC4	1	1	ZCCHC14	1377	chr16:87525275:-	KLHDC4	37957	chr16:87748179:-	ONLY_REF_SPLICE	YES	7	37	0.22	0.05	0.0109	0.0109	ZCCHC14->chr16:87439852-87525651:-,zinc_finger_CCHC-type_containing_14,KLHDC4->chr16:87730091-87799598:-,kelch_domain_containing_4	HCC95_LUNG	0.05	0.22	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000454
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	208	56	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	69	72	0.79	0.79	1.8119	0.4878	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	0.79	2.2997	TRUE	181	1564	124	196	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	163	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.4199	0.2004	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.6203	TRUE	508	994	45	981	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	133	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1586	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1586	TRUE	0	0	0	518	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	92	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	100	8	0.49	0.92	0.8014	0.0348	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.92	0.8362	TRUE	519	3926	326	965	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC42--CELA3A	49	0	CDC42	1116	chr1:22379235:+	CELA3A	14952	chr1:22329496:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4268	0	LOCAL_REARRANGEMENT:+:[40088],CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,CELA3A->chr1:22328149-22339032:+,chymotrypsin_like_elastase_family_member_3A	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4268	TRUE	0	1	0	1	1	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	30	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2613	0.0087	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.27	FALSE	462	80	0	856	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMURF1--KPNA7	26	3	SMURF1	1375	chr7:98741349:-	KPNA7	31998	chr7:98792961:-	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.2265	0.0261	LOCAL_REARRANGEMENT:-:[29474],SMURF1->SMAD_specific_E3_ubiquitin_protein_ligase_1,chr7:98625061-98741723:-,KPNA7->chr7:98771197-98805129:-,karyopherin_subunit_alpha_7	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.2526	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	22	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1916	0.0348	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2264	FALSE	499	1288	110	792	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC42--CELA3A	20	0	CDC42	1116	chr1:22379235:+	CELA3A	16038	chr1:22331940:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1742	0	LOCAL_REARRANGEMENT:+:[40088],CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,CELA3A->chr1:22328149-22339032:+,chymotrypsin_like_elastase_family_member_3A	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1742	TRUE	0	1	0	1	1	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	19	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1655	0.0348	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2003	FALSE	499	1288	110	792	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMURF1--KPNA7	18	2	SMURF1	1375	chr7:98741349:-	KPNA7	33267	chr7:98790724:-	ONLY_REF_SPLICE	YES	2	7	0.91	0.74	0.1568	0.0174	LOCAL_REARRANGEMENT:-:[29474],SMURF1->SMAD_specific_E3_ubiquitin_protein_ligase_1,chr7:98625061-98741723:-,KPNA7->chr7:98771197-98805129:-,karyopherin_subunit_alpha_7	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	0.91	0.1742	TRUE	0	1	0	1	1	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AHCTF1--ZNF670	15	6	AHCTF1	14213	chr1:247059137:-	ZNF670	58402	chr1:247109129:-	ONLY_REF_SPLICE	YES	23	18	0.48	0.54	0.1307	0.0523	LOCAL_REARRANGEMENT:-:[13569],AHCTF1->AT-hook_containing_transcription_factor_1,chr1:247002400-247095280:-,ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.54	0.183	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	15	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1307	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1307	TRUE	0	0	0	434	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	13	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	36	34	0.36	0.37	0.1132	0.061	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.37	0.1742	TRUE	267	562	48	632	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC42--CELA3A	14	0	CDC42	1116	chr1:22379235:+	CELA3A	19107	chr1:22336198:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.122	0	LOCAL_REARRANGEMENT:+:[40088],CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,CELA3A->chr1:22328149-22339032:+,chymotrypsin_like_elastase_family_member_3A	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.122	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	21	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	3	0.97	0.9	0.061	0.1829	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.97	0.2439	FALSE	189	492	56	216	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	11	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0958	0.0087	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1045	FALSE	462	80	0	856	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	24	MT-CO3	1220	chrM:9426:+	MT-ATP6	4919	chrM:8661:+	INCL_NON_REF_SPLICE	YES	4	26	0.88	0.53	0.0436	0.2091	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	0.88	0.2527	FALSE	189	492	56	216	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	25	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	NO	4	0	0.88	1	0.0348	0.2178	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.2526	FALSE	189	492	56	216	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	25	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	4	0	0.88	1	0.0348	0.2178	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.2526	FALSE	189	492	56	216	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC42--CELA3A	9	0	CDC42	1116	chr1:22379235:+	CELA3A	17964	chr1:22333866:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0784	0	LOCAL_REARRANGEMENT:+:[40088],CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,CELA3A->chr1:22328149-22339032:+,chymotrypsin_like_elastase_family_member_3A	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	9	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0784	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0784	TRUE	0	0	0	81	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0784	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0784	FALSE	13	9	0	364	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0523	0.1045	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1568	FALSE	499	1288	110	792	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	19	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	0	74	1	0.24	0.0348	0.1655	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.2003	FALSE	189	492	56	216	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	23	MT-CO3	1205	chrM:9411:+	MT-ATP6	5179	chrM:8921:+	INCL_NON_REF_SPLICE	YES	7	59	0.79	0.31	0.0261	0.2004	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.79	0.2265	FALSE	189	492	56	216	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	8	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0697	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0697	FALSE	416	2512	207	587	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	19	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0.1655	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1916	FALSE	499	1288	110	792	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	7	1	AC104820.2	8902	chr2:182127704:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	31	254	0.21	0.03	0.061	0.0087	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.21	0.0697	FALSE	0	0	0	11	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AHCTF1--ZNF670	5	7	AHCTF1	15303	chr1:247057961:-	ZNF670	58402	chr1:247109129:-	ONLY_REF_SPLICE	YES	19	18	0.39	0.4	0.0436	0.061	LOCAL_REARRANGEMENT:-:[13569],AHCTF1->AT-hook_containing_transcription_factor_1,chr1:247002400-247095280:-,ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.4	0.1046	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	6	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0523	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0523	TRUE	0	5	1	24	1	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0523	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0523	FALSE	189	492	56	216	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	5	3	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	14	254	0.36	0.03	0.0436	0.0261	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.36	0.0697	FALSE	0	0	0	19	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMURF1--KPNA7	5	3	SMURF1	1375	chr7:98741349:-	KPNA7	31170	chr7:98793789:-	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0436	0.0261	LOCAL_REARRANGEMENT:-:[29474],SMURF1->SMAD_specific_E3_ubiquitin_protein_ligase_1,chr7:98625061-98741723:-,KPNA7->chr7:98771197-98805129:-,karyopherin_subunit_alpha_7	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0697	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	6	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0348	0.0523	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0871	FALSE	189	492	56	216	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC42--CELA3A	5	0	CDC42	1116	chr1:22379235:+	CELA3A	14989	chr1:22329533:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	LOCAL_REARRANGEMENT:+:[40088],CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,CELA3A->chr1:22328149-22339032:+,chymotrypsin_like_elastase_family_member_3A	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	TRUE	0	1	0	1	1	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	5	0	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	TRUE	0	0	0	434	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	TRUE	22	156	2	142	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	2	10	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	69	53	0.15	0.18	0.0174	0.0871	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.18	0.1045	TRUE	20	16	0	28	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	6	MT-CO3	1149	chrM:9355:+	MT-ATP6	5426	chrM:9168:+	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0261	0.0523	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.0784	FALSE	189	492	56	216	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	34	37	0.19	0.18	0.0261	0.0436	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.19	0.0697	TRUE	267	562	48	632	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	3	5	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	66	72	0.11	0.1	0.0261	0.0436	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.11	0.0697	TRUE	105	90	7	93	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	4	0	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0348	FALSE	0	1	0	18	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0348	FALSE	13	9	0	364	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0348	FALSE	189	492	56	216	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	4	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0.0348	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0609	FALSE	499	1288	110	792	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0261	0.0261	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0522	FALSE	16	356	14	466	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	3	1	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0.0087	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0348	FALSE	0	26	0	50	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	3	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0261	TRUE	0	0	0	100	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGF14-IT1--FGF14	3	0	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0261	TRUE	71	201	23	28	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0261	FALSE	499	1288	110	792	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0261	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0261	FALSE	499	1288	110	792	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	2	2	KANSL1	9741	chr17:44171926:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	69	17	0.05	0.19	0.0174	0.0174	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.19	0.0348	TRUE	51	25	1	17	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--SRSF1	2	1	CHD2	6529	chr15:93444529:+	SRSF1	62155	chr17:56082402:-	ONLY_REF_SPLICE	YES	28	728	0.1	0	0.0174	0.0087	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.1	0.0261	FALSE	1	2	0	9	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRD8--RAD9A	2	0	BRD8	2416	chr5:137513260:-	RAD9A	31392	chr11:67160967:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	BRD8->bromodomain_containing_8,chr5:137475455-137514675:-,RAD9A->Oncogene{Bushman},RAD9_checkpoint_clamp_component_A,chr11:67159176-67165881:+	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMC2--WDR60	2	0	CMC2	2457	chr16:81040339:-	WDR60	38261	chr7:158716262:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	CMC2->C-x9-C_motif_containing_2,chr16:81009698-81053875:-,WDR60->WD_repeat_domain_60,chr7:158649269-158749438:+	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR3--FAM132A	2	0	DSCR3	1724	chr21:38639539:-	FAM132A	22001	chr1:1179877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,FAM132A->chr1:1177826-1182102:-,family_with_sequence_similarity_132_member_A	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIF1A--PRKCH	2	0	HIF1A	1327	chr14:62162557:+	PRKCH	48659	chr14:61952220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	1	15	1	9	1	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFV3--CAMLG	2	0	NDUFV3	5809	chr21:44317157:+	CAMLG	19099	chr5:134079677:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,CAMLG->calcium_modulating_ligand,chr5:134074191-134087847:+	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--NT5DC2	2	0	PPP1R12C	8950	chr19:55610152:-	NT5DC2	23494	chr3:52563350:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,NT5DC2->5'-nucleotidase_domain_containing_2,chr3:52558386-52569070:-	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--SPTSSA	2	0	RCC1	2175	chr1:28834672:+	SPTSSA	20139	chr14:34904510:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SPTSSA->chr14:34901995-34931562:-,serine_palmitoyltransferase_small_subunit_A	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAG2--THOC2	2	0	STAG2	2895	chrX:123095956:+	THOC2	77578	chrX:122748040:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	GTEx&tcga_normals:1/3694=0.03%,STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,THOC2->THO_complex_2,chrX:122734412-122866906:-	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	2	0	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	37	101	7	40	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	62	24	1	171	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZCRB1--PPHLN1	2	0	ZCRB1	1195	chr12:42719726:-	PPHLN1	21756	chr12:42748963:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	NEIGHBORS_OVERLAP:-:+:[14040],ZCRB1->chr12:42705880-42719920:-,zinc_finger_CCHC-type_and_RNA_binding_motif_containing_1,PPHLN1->chr12:42632249-42853517:+,periphilin_1	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB1--BMI1	2	0	ZEB1	1798	chr10:31608221:+	BMI1	31789	chr10:22615360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	4	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF736--CUX1	2	0	ZNF736	8361	chr7:63797360:+	CUX1	65680	chr7:101916637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0	ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0087	0.0261	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.0348	FALSE	0	23	1	67	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMC2--CTCF	1	1	CMC2	2457	chr16:81040339:-	CTCF	18966	chr16:67605051:+	ONLY_REF_SPLICE	YES	144	3	0.01	0.4	0.0087	0.0087	CMC2->C-x9-C_motif_containing_2,chr16:81009698-81053875:-,CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.4	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR2--DHX34	1	1	GLTSCR2	1262	chr19:48249040:+	DHX34	29491	chr19:47885237:+	ONLY_REF_SPLICE	YES	2437	25	0	0.07	0.0087	0.0087	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:2=pct:3.8],Breast=[count:2=pct:1.8],Cervix_Uteri=[count:1=pct:12.5],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=4;pct=0.05%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hippocampus=1,Whole_Blood=1,Spleen=1},GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0174	FALSE	14	43	2	13	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	1	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0087	0.0087	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	FALSE	0	24	0	62	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--MAEA	1	1	UVSSA	7499	chr4:1349033:+	MAEA	36799	chr4:1326545:+	ONLY_REF_SPLICE	YES	13	144	0.13	0.01	0.0087	0.0087	GTEx_FI:{Blood=[count:5=pct:2.9],Skin=[count:4=pct:1.3],Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:1=pct:0.8],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[7119],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.13	0.0174	FALSE	8	1	0	2	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	NO	22	0	0.08	1	0.0087	0.0087	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0174	FALSE	272	151	14	158	0	FALSE	ACH-000964
MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF789--ZKSCAN1	1	1	ZNF789	8999	chr7:99081766:+	ZKSCAN1	21058	chr7:99621042:+	ONLY_REF_SPLICE	YES	30	72	0.06	0.03	0.0087	0.0087	HGNC_GENEFAM,PROTCLUST,ZNF789->chr7:99070464-99101273:+,zinc_finger_protein_789,ZKSCAN1->chr7:99613204-99639312:+,zinc_finger_with_KRAB_and_SCAN_domains_1	MOLT3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.06	0.0174	TRUE	0	0	0	1	0	FALSE	ACH-000964
KP2_PANCREAS	RPL14--AC005540.3	262	1	RPL14	4483	chr3:40503515:+	AC005540.3	8966	chr2:191745649:-	INCL_NON_REF_SPLICE	YES	2271	1	0.1	1	3.1421	0.012	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	0.1	1	3.1541	TRUE	1	3	0	5	3	TRUE	ACH-000281
KP2_PANCREAS	MT-TA--MT-TC	101	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2113	0.1079	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KP2_PANCREAS	1	1	1.3192	FALSE	462	80	0	856	0	FALSE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	57	0	RPL14	4486	chr3:40503518:+	AC005540.3	8972	chr2:191745643:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6836	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	1	1	0.6836	TRUE	1	3	0	5	3	TRUE	ACH-000281
KP2_PANCREAS	TIMM23B--LINC00843	42	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5037	0.1679	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KP2_PANCREAS	1	1	0.6716	TRUE	508	994	45	981	0	FALSE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	35	0	RPL14	4486	chr3:40503518:+	AC005540.3	8975	chr2:191745640:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4197	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	1	1	0.4197	TRUE	1	3	0	5	3	TRUE	ACH-000281
KP2_PANCREAS	MT-TA--MT-TC	31	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3718	0.0959	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KP2_PANCREAS	1	1	0.4677	FALSE	462	80	0	856	0	FALSE	ACH-000281
KP2_PANCREAS	RP11-96H19.1--RP11-446N19.1	26	14	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.95	0.98	0.3118	0.1679	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KP2_PANCREAS	0.95	0.98	0.4797	FALSE	515	4851	409	746	0	FALSE	ACH-000281
KP2_PANCREAS	MT-ND6--MT-TE	28	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3358	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP2_PANCREAS	1	1	0.3358	FALSE	499	1288	110	792	0	FALSE	ACH-000281
KP2_PANCREAS	TIMM23--RP11-464F9.1	24	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	247	4	0.1	0.87	0.2878	0.024	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KP2_PANCREAS	0.1	0.87	0.3118	TRUE	519	3926	326	965	0	FALSE	ACH-000281
KP2_PANCREAS	MT-ND6--MT-ND5	24	1	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	3609	1	0.01	0.2878	0.012	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KP2_PANCREAS	0.01	1	0.2998	FALSE	101	855	57	72	0	FALSE	ACH-000281
KP2_PANCREAS	MT-ND6--MT-TE	20	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.84	1	0.2399	0.0839	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP2_PANCREAS	0.84	1	0.3238	FALSE	499	1288	110	792	0	FALSE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	15	1	RPL14	4492	chr3:40503524:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	2009	1	0.01	0.94	0.1799	0.012	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	0.01	0.94	0.1919	TRUE	1	3	0	5	3	TRUE	ACH-000281
KP2_PANCREAS	MT-TA--MT-TC	12	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1439	0.024	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KP2_PANCREAS	1	1	0.1679	FALSE	462	80	0	856	0	FALSE	ACH-000281
KP2_PANCREAS	NRIP1--AF127936.7	10	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.46	1	0.1199	0.036	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KP2_PANCREAS	0.46	1	0.1559	FALSE	164	806	69	479	0	FALSE	ACH-000281
KP2_PANCREAS	HSP90AB1--MT-RNR2	10	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2325	0	0.01	1	0.1199	0.024	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KP2_PANCREAS	0.01	1	0.1439	FALSE	13	9	0	364	0	FALSE	ACH-000281
KP2_PANCREAS	MT-ND6--MT-TE	10	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1199	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP2_PANCREAS	1	1	0.1199	FALSE	499	1288	110	792	0	FALSE	ACH-000281
KP2_PANCREAS	MT-TA--MT-TC	8	7	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0959	0.0839	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KP2_PANCREAS	1	1	0.1798	FALSE	462	80	0	856	0	FALSE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	9	0	RPL14	4476	chr3:40503508:+	AC005540.3	8959	chr2:191745656:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1079	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	1	1	0.1079	TRUE	1	3	0	5	3	TRUE	ACH-000281
KP2_PANCREAS	STK40--CSF3R	6	8	STK40	1174	chr1:36851324:-	CSF3R	22025	chr1:36947138:-	ONLY_REF_SPLICE	YES	16	0	0.47	1	0.072	0.0959	LOCAL_REARRANGEMENT:-:[80147],STK40->chr1:36805225-36851497:-,serine/threonine_kinase_40,CSF3R->Oncogene{Bushman},chr1:36931644-36948879:-,colony_stimulating_factor_3_receptor	KP2_PANCREAS	0.47	1	0.1679	TRUE	0	0	0	1	0	TRUE	ACH-000281
KP2_PANCREAS	RP11-96H19.1--RP11-446N19.1	4	15	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.95	0.048	0.1799	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KP2_PANCREAS	0.95	1	0.2279	FALSE	467	2173	244	435	0	FALSE	ACH-000281
KP2_PANCREAS	MT-ND6--MT-ND5	7	1	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1990	1	0	0.0839	0.012	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KP2_PANCREAS	0	1	0.0959	FALSE	101	855	57	72	0	FALSE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	7	1	RPL14	4498	chr3:40503530:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	1885	1	0	0.89	0.0839	0.012	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	0	0.89	0.0959	FALSE	1	3	0	5	3	FALSE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	7	1	RPL14	4489	chr3:40503521:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	2057	1	0	0.89	0.0839	0.012	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	0	0.89	0.0959	FALSE	1	3	0	5	3	FALSE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	7	1	RPL14	4485	chr3:40503517:+	AC005540.3	8959	chr2:191745656:-	INCL_NON_REF_SPLICE	YES	2289	0	0	1	0.0839	0.012	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	0	1	0.0959	FALSE	1	3	0	5	3	FALSE	ACH-000281
KP2_PANCREAS	MT-ND6--MT-ND5	7	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KP2_PANCREAS	1	1	0.0839	FALSE	101	855	57	72	0	FALSE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	7	0	RPL14	4488	chr3:40503520:+	AC005540.3	8971	chr2:191745644:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	1	1	0.0839	TRUE	1	3	0	5	3	TRUE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	7	0	RPL14	4488	chr3:40503520:+	AC005540.3	8974	chr2:191745641:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	1	1	0.0839	TRUE	1	3	0	5	3	TRUE	ACH-000281
KP2_PANCREAS	CTD-2337A12.1--CAST	6	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	206	1	0.03	0.072	0.012	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	KP2_PANCREAS	0.03	1	0.084	TRUE	347	1186	183	220	0	FALSE	ACH-000281
KP2_PANCREAS	KRT13--KRT5	6	1	KRT13	1390	chr17:39661568:-	KRT5	9490	chr12:52913707:-	INCL_NON_REF_SPLICE	YES	658	580	0.01	0.01	0.072	0.012	GTEx&tcga_normals:175/3694=4.74%,GTEx:4.57%,GTEx_FI:{Esophagus=[count:10=pct:2.5]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=2},KRT13->chr17:39657233-39661957:-,keratin_13,KRT5->chr12:52908359-52914471:-,keratin_5	KP2_PANCREAS	0.01	0.01	0.084	FALSE	9	1	0	2	0	FALSE	ACH-000281
KP2_PANCREAS	MT-ND6--MT-ND5	6	1	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	3490	1	0	0.072	0.012	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KP2_PANCREAS	0	1	0.084	FALSE	101	855	57	72	0	FALSE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	6	1	RPL14	4487	chr3:40503519:+	AC005540.3	8967	chr2:191745648:-	INCL_NON_REF_SPLICE	YES	2317	1	0	0.88	0.072	0.012	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	0	0.88	0.084	FALSE	1	3	0	5	3	FALSE	ACH-000281
KP2_PANCREAS	MT-ND6--MT-TE	4	8	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	5	0	0.71	1	0.048	0.0959	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP2_PANCREAS	0.71	1	0.1439	FALSE	499	1288	110	792	0	FALSE	ACH-000281
KP2_PANCREAS	HSP90AB1--MT-RNR2	5	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2312	0	0	1	0.06	0.024	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KP2_PANCREAS	0	1	0.084	FALSE	13	9	0	364	0	FALSE	ACH-000281
KP2_PANCREAS	MT-ATP8--MT-CO1	5	2	MT-ATP8	1284	chrM:8649:+	MT-CO1	4850	chrM:6546:+	INCL_NON_REF_SPLICE	NO	0	27039	1	0	0.06	0.024	LOCAL_REARRANGEMENT:+:[921],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KP2_PANCREAS	0	1	0.084	FALSE	3	1	0	9	0	FALSE	ACH-000281
KP2_PANCREAS	RP11-120D5.1--MID1	5	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	34	0.88	0.17	0.06	0.024	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KP2_PANCREAS	0.17	0.88	0.084	FALSE	16	356	14	466	0	FALSE	ACH-000281
KP2_PANCREAS	RP11-123O10.4--GRIP1	5	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.06	0.024	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KP2_PANCREAS	1	1	0.084	FALSE	416	2512	207	587	0	FALSE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	5	1	RPL14	4495	chr3:40503527:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	1915	1	0	0.86	0.06	0.012	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	0	0.86	0.072	FALSE	1	3	0	5	3	FALSE	ACH-000281
KP2_PANCREAS	MT-ATP8--MT-CO1	5	0	MT-ATP8	1086	chrM:8451:+	MT-CO1	4721	chrM:6417:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.06	0	LOCAL_REARRANGEMENT:+:[921],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KP2_PANCREAS	1	1	0.06	FALSE	3	1	0	9	0	FALSE	ACH-000281
KP2_PANCREAS	MT-ND6--MT-ND5	5	0	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.06	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KP2_PANCREAS	1	1	0.06	FALSE	101	855	57	72	0	FALSE	ACH-000281
KP2_PANCREAS	DNAJC25--UGCG	4	3	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	136	67	0.05	0.09	0.048	0.036	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	KP2_PANCREAS	0.05	0.09	0.084	TRUE	50	73	10	50	0	FALSE	ACH-000281
KP2_PANCREAS	MT-ND6--MT-TE	4	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.048	0.036	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP2_PANCREAS	1	1	0.084	FALSE	499	1288	110	792	0	FALSE	ACH-000281
KP2_PANCREAS	MT-ND6--MT-TE	3	7	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	5	0	0.67	1	0.036	0.0839	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KP2_PANCREAS	0.67	1	0.1199	FALSE	499	1288	110	792	0	FALSE	ACH-000281
KP2_PANCREAS	C15orf57--CBX3	4	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	25	44	0.19	0.12	0.048	0.024	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KP2_PANCREAS	0.12	0.19	0.072	TRUE	267	562	48	632	0	FALSE	ACH-000281
KP2_PANCREAS	C15orf57--CBX3	3	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	25	43	0.26	0.17	0.036	0.072	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KP2_PANCREAS	0.17	0.26	0.108	TRUE	267	562	48	632	0	FALSE	ACH-000281
KP2_PANCREAS	RP11-114H23.1--RP11-114H23.2	4	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.048	0.012	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	KP2_PANCREAS	0.71	1	0.06	FALSE	81	155	12	160	0	FALSE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	4	0	RPL14	4486	chr3:40503518:+	AC005540.3	8978	chr2:191745637:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.048	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	1	1	0.048	TRUE	1	3	0	5	3	TRUE	ACH-000281
KP2_PANCREAS	AGBL4--AGBL4-IT1	3	1	AGBL4	3399	chr1:50162985:-	AGBL4-IT1	30507	chr1:49840016:-	ONLY_REF_SPLICE	YES	6	0	0.4	1	0.036	0.012	NEIGHBORS_OVERLAP:-:-:[97884],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,AGBL4-IT1->AGBL4_intronic_transcript_1,chr1:49839873-49937757:-	KP2_PANCREAS	0.4	1	0.048	FALSE	75	131	5	14	0	FALSE	ACH-000281
KP2_PANCREAS	MTAP--RP11-399D6.2	3	1	MTAP	12211	chr9:21859424:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	63	0	0.06	1	0.036	0.012	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	KP2_PANCREAS	0.06	1	0.048	TRUE	0	0	0	2	0	TRUE	ACH-000281
KP2_PANCREAS	MTAP--RP11-399D6.2	3	1	MTAP	9899	chr9:21854869:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	44	0	0.08	1	0.036	0.012	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	KP2_PANCREAS	0.08	1	0.048	TRUE	0	0	0	4	0	TRUE	ACH-000281
KP2_PANCREAS	RPL14--AC005540.3	3	1	RPL14	4501	chr3:40503533:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	1854	1	0	0.8	0.036	0.012	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KP2_PANCREAS	0	0.8	0.048	FALSE	1	3	0	5	3	FALSE	ACH-000281
KP2_PANCREAS	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.024	0.024	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KP2_PANCREAS	0.18	1	0.048	FALSE	125	705	46	456	0	FALSE	ACH-000281
KP2_PANCREAS	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.024	0.012	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KP2_PANCREAS	0.75	1	0.036	FALSE	292	1546	117	613	0	FALSE	ACH-000281
KP2_PANCREAS	COPS7B--DIS3L2	2	0	COPS7B	1213	chr2:232646593:+	DIS3L2	22784	chr2:232888987:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	COPS7B->COP9_signalosome_subunit_7B,chr2:232646381-232673963:+,DIS3L2->DIS3_like_3'-5'_exoribonuclease_2,chr2:232825955-233209060:+	KP2_PANCREAS	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000281
KP2_PANCREAS	HDAC9--RPS27A	2	0	HDAC9	30339	chr7:18706099:+	RPS27A	59424	chr2:55459944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	HDAC9->chr7:18126572-19042039:+,histone_deacetylase_9,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	KP2_PANCREAS	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000281
KP2_PANCREAS	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KP2_PANCREAS	1	1	0.024	TRUE	62	24	1	171	0	FALSE	ACH-000281
KP2_PANCREAS	USP32--PPM1D	2	0	USP32	3790	chr17:58469243:-	PPM1D	50096	chr17:58711214:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,PPM1D->Oncogene{Bushman},chr17:58677544-58741849:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1D	KP2_PANCREAS	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000281
KP2_PANCREAS	SCAMP1--AP3B1	1	2	SCAMP1	1214	chr5:77656552:+	AP3B1	22157	chr5:77563419:-	ONLY_REF_SPLICE	YES	45	70	0.06	0.04	0.012	0.024	GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[65760],SCAMP1->chr5:77656339-77776562:+,secretory_carrier_membrane_protein_1,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	KP2_PANCREAS	0.04	0.06	0.036	TRUE	0	1	1	2	0	FALSE	ACH-000281
KP2_PANCREAS	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	1446	64	0	0.04	0.012	0.024	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	KP2_PANCREAS	0	0.04	0.036	FALSE	6	50	7	115	0	FALSE	ACH-000281
KP2_PANCREAS	RNF126--CNN2	1	1	RNF126	1231	chr19:663047:-	CNN2	16592	chr19:1036129:+	ONLY_REF_SPLICE	NO	37	210	0.05	0.01	0.012	0.012	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},RNF126->chr19:647526-663277:-,ring_finger_protein_126,CNN2->calponin_2,chr19:1026298-1039068:+	KP2_PANCREAS	0.01	0.05	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000281
KP2_PANCREAS	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.012	0.012	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KP2_PANCREAS	1	1	0.024	FALSE	93	270	15	244	0	FALSE	ACH-000281
CORL24_LUNG	TIMM23B--LINC00843	114	40	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3216	0.4637	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CORL24_LUNG	1	1	1.7853	TRUE	508	994	45	981	0	FALSE	ACH-000382
CORL24_LUNG	TIMM23--RP11-464F9.1	69	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	195	6	0.27	0.92	0.7999	0.0464	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CORL24_LUNG	0.27	0.92	0.8463	TRUE	519	3926	326	965	0	FALSE	ACH-000382
CORL24_LUNG	MT-ND6--MT-TE	42	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.4869	0.0232	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL24_LUNG	0.96	1	0.5101	FALSE	499	1288	110	792	0	FALSE	ACH-000382
CORL24_LUNG	MT-ND6--MT-TE	34	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3942	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL24_LUNG	1	1	0.3942	FALSE	499	1288	110	792	0	FALSE	ACH-000382
CORL24_LUNG	MT-ND6--MT-TE	27	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.313	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL24_LUNG	1	1	0.313	FALSE	499	1288	110	792	0	FALSE	ACH-000382
CORL24_LUNG	DNM2--ILF3	20	9	DNM2	1325	chr19:10829079:+	ILF3	58067	chr19:10799855:+	ONLY_REF_SPLICE	YES	103	278	0.22	0.09	0.2319	0.1043	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:+:[25662],DNM2->chr19:10828755-10944164:+,dynamin_2,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	CORL24_LUNG	0.09	0.22	0.3362	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	ARMC4P1--RP11-748L13.2	18	11	ARMC4P1	5853	chr10:27577753:+	RP11-748L13.2	13614	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2087	0.1275	LOCAL_INVERSION:+:-:[42533],ARMC4P1->armadillo_repeat_containing_4_pseudogene_1,chr10:27547691-27577753:+,RP11-748L13.2->chr10:27620286-27630181:-	CORL24_LUNG	1	1	0.3362	TRUE	1	34	11	8	34	TRUE	ACH-000382
CORL24_LUNG	RP11-680G10.1--GSE1	17	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	9	1	0.74	0.1971	0.0927	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CORL24_LUNG	0.74	1	0.2898	TRUE	465	1949	224	605	0	FALSE	ACH-000382
CORL24_LUNG	MT-TA--MT-TC	17	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1971	0.0232	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL24_LUNG	1	1	0.2203	FALSE	462	80	0	856	0	FALSE	ACH-000382
CORL24_LUNG	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1971	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CORL24_LUNG	1	1	0.1971	TRUE	0	0	0	518	0	FALSE	ACH-000382
CORL24_LUNG	MT-TA--MT-TC	15	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1739	0.0116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL24_LUNG	1	1	0.1855	FALSE	462	80	0	856	0	FALSE	ACH-000382
CORL24_LUNG	DNM2--ILF3	10	14	DNM2	1325	chr19:10829079:+	ILF3	57438	chr19:10799226:+	ONLY_REF_SPLICE	YES	103	192	0.19	0.11	0.1159	0.1623	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:+:[25662],DNM2->chr19:10828755-10944164:+,dynamin_2,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	CORL24_LUNG	0.11	0.19	0.2782	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	RP11-680G10.1--GSE1	9	13	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.79	0.1043	0.1507	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CORL24_LUNG	0.79	1	0.255	TRUE	458	1351	185	561	0	FALSE	ACH-000382
CORL24_LUNG	VTI1A--RP11-57H14.3	11	5	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	21	0	0.43	1	0.1275	0.058	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	CORL24_LUNG	0.43	1	0.1855	FALSE	272	151	14	158	0	FALSE	ACH-000382
CORL24_LUNG	RP11-108K3.1--GLDN	8	13	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0927	0.1507	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CORL24_LUNG	1	1	0.2434	FALSE	0	19	0	46	0	FALSE	ACH-000382
CORL24_LUNG	MT-ND6--MT-TE	9	3	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.1043	0.0348	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL24_LUNG	0.86	1	0.1391	FALSE	499	1288	110	792	0	FALSE	ACH-000382
CORL24_LUNG	MT-CO3--MT-ATP6	8	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	8	0	0.58	1	0.0927	0.0348	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CORL24_LUNG	0.58	1	0.1275	FALSE	189	492	56	216	0	FALSE	ACH-000382
CORL24_LUNG	MALAT1--FRMD8	7	6	MALAT1	4053	chr11:65268285:+	FRMD8	20747	chr11:65172335:+	INCL_NON_REF_SPLICE	YES	84	73	0.13	0.15	0.0812	0.0696	LOCAL_REARRANGEMENT:+:[84237],MALAT1->chr11:65265233-65273940:+,metastasis_associated_lung_adenocarcinoma_transcript_1_(non-protein_coding),FRMD8->FERM_domain_containing_8,Oncogene{Bushman},chr11:65154070-65180996:+	CORL24_LUNG	0.13	0.15	0.1508	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	CCNY--CREM	6	5	CCNY	7835	chr10:35626135:+	CREM	28939	chr10:35437296:+	ONLY_REF_SPLICE	YES	96	25	0.1	0.31	0.0696	0.058	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:+:[34067],CCNY->chr10:35535953-35860852:+,cyclin_Y,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	CORL24_LUNG	0.1	0.31	0.1276	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	RP11-1L12.3--SLC5A12	5	9	RP11-1L12.3	8246	chr11:27068750:-	SLC5A12	15124	chr11:26734253:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0.1043	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	CORL24_LUNG	1	1	0.1623	TRUE	0	0	0	1	0	FALSE	ACH-000382
CORL24_LUNG	MAST1--ZNF791	6	4	MAST1	6966	chr19:12958871:+	ZNF791	27790	chr19:12738535:+	ONLY_REF_SPLICE	YES	85	27	0.11	0.27	0.0696	0.0464	MAST1->chr19:12944765-12985765:+,microtubule_associated_serine/threonine_kinase_1,ZNF791->chr19:12721732-12742735:+,zinc_finger_protein_791	CORL24_LUNG	0.11	0.27	0.116	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	RP11-1L12.3--SLC5A12	5	8	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.058	0.0927	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	CORL24_LUNG	0.76	1	0.1507	TRUE	3	101	0	60	0	FALSE	ACH-000382
CORL24_LUNG	AGBL4--AGBL4-IT1	6	2	AGBL4	3399	chr1:50162985:-	AGBL4-IT1	30507	chr1:49840016:-	ONLY_REF_SPLICE	YES	17	0	0.32	1	0.0696	0.0232	NEIGHBORS_OVERLAP:-:-:[97884],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,AGBL4-IT1->AGBL4_intronic_transcript_1,chr1:49839873-49937757:-	CORL24_LUNG	0.32	1	0.0928	FALSE	75	131	5	14	0	FALSE	ACH-000382
CORL24_LUNG	CTD-2008L17.1--RP11-456O19.2	5	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.058	0.0464	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	CORL24_LUNG	0.6	1	0.1044	FALSE	20	187	4	79	0	FALSE	ACH-000382
CORL24_LUNG	LDLRAD3--PRR5L	5	4	LDLRAD3	5673	chr11:36120011:+	PRR5L	17578	chr11:36317840:+	INCL_NON_REF_SPLICE	YES	88	0	0.09	1	0.058	0.0464	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	CORL24_LUNG	0.09	1	0.1044	FALSE	0	52	1	15	0	FALSE	ACH-000382
CORL24_LUNG	TUBB3--SPIRE2	5	3	TUBB3	5261	chr16:89989866:+	SPIRE2	21336	chr16:89911730:+	ONLY_REF_SPLICE	YES	97	4	0.08	0.67	0.058	0.0348	LOCAL_INVERSION:+,chr16:+:[47846],TUBB3->chr16:89985573-90002500:+,chr16:89987800-90005169:+,tubulin_beta_3_class_III,SPIRE2->chr16:89884587-89937727:+,spire_type_actin_nucleation_factor_2	CORL24_LUNG	0.08	0.67	0.0928	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	MT-ND6--MT-TE	5	2	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.058	0.0232	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL24_LUNG	0.78	1	0.0812	FALSE	499	1288	110	792	0	FALSE	ACH-000382
CORL24_LUNG	RP11-108K3.1--GLDN	3	8	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0.0927	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CORL24_LUNG	1	1	0.1275	FALSE	0	30	1	55	0	FALSE	ACH-000382
CORL24_LUNG	RP11-108K3.1--GLDN	3	7	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	0	2	1	0.83	0.0348	0.0812	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CORL24_LUNG	0.83	1	0.116	FALSE	0	14	0	30	0	FALSE	ACH-000382
CORL24_LUNG	MT-ND6--MT-TE	4	2	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0464	0.0232	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL24_LUNG	0.86	1	0.0696	FALSE	499	1288	110	792	0	FALSE	ACH-000382
CORL24_LUNG	DPP9--ARRDC5	4	1	DPP9	16936	chr19:4695390:-	ARRDC5	34598	chr19:4891585:-	ONLY_REF_SPLICE	YES	64	0	0.07	1	0.0464	0.0116	DPP9->chr19:4675236-4724685:-,dipeptidyl_peptidase_9,ARRDC5->arrestin_domain_containing_5,chr19:4890449-4902879:-	CORL24_LUNG	0.07	1	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	CASC17--RP11-238F2.1	4	0	CASC17	2134	chr17:69181737:-	RP11-238F2.1	9061	chr17:68775370:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	GTEx_FI:{Brain=[count:5=pct:0.8]},CASC17->cancer_susceptibility_candidate_17_(non-protein_coding),chr17:69093916-69198318:-,RP11-238F2.1->chr17:68774745-68775371:-	CORL24_LUNG	1	1	0.0464	TRUE	5	17	0	2	0	FALSE	ACH-000382
CORL24_LUNG	EPHX1--DNAH14	4	0	EPHX1	1078	chr1:225997871:+	DNAH14	107240	chr1:225562390:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0464	0	EPHX1->chr1:225997794-226033260:+,epoxide_hydrolase_1,DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14	CORL24_LUNG	1	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL24_LUNG	1	1	0.0464	FALSE	499	1288	110	792	0	FALSE	ACH-000382
CORL24_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL24_LUNG	1	1	0.0464	FALSE	499	1288	110	792	0	FALSE	ACH-000382
CORL24_LUNG	RP11-120D5.1--MID1	3	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	9	5	0.4	0.55	0.0348	0.0348	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL24_LUNG	0.4	0.55	0.0696	FALSE	0	48	1	163	0	FALSE	ACH-000382
CORL24_LUNG	CCNY--CREM	3	2	CCNY	7835	chr10:35626135:+	CREM	36944	chr10:35468062:+	ONLY_REF_SPLICE	YES	96	47	0.05	0.1	0.0348	0.0232	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:+:[34067],CCNY->chr10:35535953-35860852:+,cyclin_Y,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	CORL24_LUNG	0.05	0.1	0.058	TRUE	0	0	0	1	0	FALSE	ACH-000382
CORL24_LUNG	ME3--SLC27A2	3	2	ME3	10123	chr11:86198379:-	SLC27A2	30602	chr15:50515162:+	ONLY_REF_SPLICE	YES	20	32	0.2	0.14	0.0348	0.0232	ME3->Oncogene{Bushman},chr11:86152150-86383678:-,malic_enzyme_3,SLC27A2->chr15:50474393-50528592:+,solute_carrier_family_27_member_2	CORL24_LUNG	0.14	0.2	0.058	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	MT-TA--MT-TC	3	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0.0232	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL24_LUNG	1	1	0.058	FALSE	462	80	0	856	0	FALSE	ACH-000382
CORL24_LUNG	MT-TA--MT-TC	3	2	MT-TA	1051	chrM:5605:-	MT-TC	4078	chrM:5818:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0.0232	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL24_LUNG	1	1	0.058	FALSE	462	80	0	856	0	FALSE	ACH-000382
CORL24_LUNG	MT-TA--MT-TC	3	2	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0.0232	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL24_LUNG	1	1	0.058	FALSE	462	80	0	856	0	FALSE	ACH-000382
CORL24_LUNG	CCNY--CREM	3	1	CCNY	7835	chr10:35626135:+	CREM	43327	chr10:35495823:+	ONLY_REF_SPLICE	YES	96	35	0.04	0.1	0.0348	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:+:[34067],CCNY->chr10:35535953-35860852:+,cyclin_Y,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	CORL24_LUNG	0.04	0.1	0.0464	TRUE	0	0	0	1	0	FALSE	ACH-000382
CORL24_LUNG	MAF--RP11-679B19.2	3	1	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0.0116	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	CORL24_LUNG	1	1	0.0464	TRUE	48	25	3	38	0	FALSE	ACH-000382
CORL24_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	1	0.8	0.8	0.0348	0.0116	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CORL24_LUNG	0.8	0.8	0.0464	FALSE	189	492	56	216	0	FALSE	ACH-000382
CORL24_LUNG	RP11-120D5.1--MID1	2	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	5	0.64	0.58	0.0232	0.058	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL24_LUNG	0.58	0.64	0.0812	FALSE	16	356	14	466	0	FALSE	ACH-000382
CORL24_LUNG	GNGT1--AC002076.10	2	4	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0232	0.0464	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	CORL24_LUNG	0.67	1	0.0696	FALSE	0	10	0	30	0	FALSE	ACH-000382
CORL24_LUNG	LRRFIP2--GOLGA4	3	0	LRRFIP2	9741	chr3:37190385:-	GOLGA4	46463	chr3:37292886:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Subcutaneous=1,Heart_-_Atrial_Appendage=1},LOCAL_INVERSION:-:+:[59488],LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2,GOLGA4->chr3:37284668-37408242:+,golgin_A4	CORL24_LUNG	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1051	chrM:14623:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL24_LUNG	1	1	0.0348	FALSE	499	1288	110	792	0	FALSE	ACH-000382
CORL24_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL24_LUNG	1	1	0.0348	FALSE	499	1288	110	792	0	FALSE	ACH-000382
CORL24_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1198	chrM:14476:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL24_LUNG	1	1	0.0348	FALSE	499	1288	110	792	0	FALSE	ACH-000382
CORL24_LUNG	RP11-108K3.1--GLDN	2	4	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	2	1	0.75	0.0232	0.0464	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CORL24_LUNG	0.75	1	0.0696	FALSE	0	14	0	30	0	FALSE	ACH-000382
CORL24_LUNG	ZNF654--HMGB2	3	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CORL24_LUNG	1	1	0.0348	TRUE	0	0	0	518	0	FALSE	ACH-000382
CORL24_LUNG	GNGT1--AC002076.10	2	3	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0232	0.0348	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	CORL24_LUNG	0.71	1	0.058	FALSE	0	28	0	37	0	FALSE	ACH-000382
CORL24_LUNG	CTD-2008L17.1--RP11-456O19.2	2	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	6	0	0.4	1	0.0232	0.0232	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	CORL24_LUNG	0.4	1	0.0464	FALSE	33	240	4	98	0	FALSE	ACH-000382
CORL24_LUNG	LDLRAD3--PRR5L	2	2	LDLRAD3	5673	chr11:36120011:+	PRR5L	34366	chr11:36422547:+	ONLY_REF_SPLICE	YES	88	6	0.04	0.4	0.0232	0.0232	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	CORL24_LUNG	0.04	0.4	0.0464	FALSE	12	71	0	11	0	FALSE	ACH-000382
CORL24_LUNG	RP11-120D5.1--MID1	1	6	RP11-120D5.1	10152	chrX:10878163:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	NO	4	4	0.64	0.64	0.0116	0.0696	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL24_LUNG	0.64	0.64	0.0812	FALSE	0	0	0	3	0	FALSE	ACH-000382
CORL24_LUNG	CAMTA1--ZFAND6	2	0	CAMTA1	32599	chr1:7812593:+	ZFAND6	45974	chr15:80390758:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+,ZFAND6->chr15:80351910-80430735:+,zinc_finger_AN1-type_containing_6	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	CCDC23--RTN1	2	0	CCDC23	1853	chr1:43282102:-	RTN1	15539	chr14:60074210:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CCDC23->chr1:43272723-43282954:-,RTN1->chr14:60062694-60337684:-,reticulon_1	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	CPNE3--KIAA1429	2	0	CPNE3	10340	chr8:87549874:+	KIAA1429	44556	chr8:95518945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CPNE3->chr8:87497059-87573726:+,copine_3,KIAA1429->KIAA1429,chr8:95499921-95565757:-	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	CTD-2035E11.3--IGLVI-63	2	0	CTD-2035E11.3	1244	chr5:43018774:+	IGLVI-63	6374	chr22:22434336:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CTD-2035E11.3->chr5:43018531-43024349:+,IGLVI-63->chr22:22434180-22434673:+,immunoglobulin_lambda_variable_(I)-63_(pseudogene)	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	EIF3J--ZBTB8OS	2	0	EIF3J	4326	chr15:44846865:+	ZBTB8OS	19199	chr1:33087549:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J,ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	EPHX1--DNAH14	2	0	EPHX1	1524	chr1:225998317:+	DNAH14	107240	chr1:225562390:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	EPHX1->chr1:225997794-226033260:+,epoxide_hydrolase_1,DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	GARNL3--ATL2	2	0	GARNL3	11206	chr9:130080406:+	ATL2	62526	chr2:38523255:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GARNL3->GTPase_activating_Rap/RanGAP_domain_like_3,chr9:129986544-130155939:+,ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	MTFR1--TASP1	2	0	MTFR1	4755	chr8:66594686:+	TASP1	36556	chr20:13463984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	MTFR1->chr8:66556969-66683496:+,mitochondrial_fission_regulator_1,TASP1->chr20:13246709-13619587:-,taspase_1	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	NUMBL--ZNF638	2	0	NUMBL	5989	chr19:41190322:-	ZNF638	43444	chr2:71623271:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	NUMBL->NUMB_like,_endocytic_adaptor_protein,chr19:41172596-41196877:-,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	PPP6R3--FEZ1	2	0	PPP6R3	1110	chr11:68228295:+	FEZ1	41305	chr11:125359718:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx&tcga_normals:1/3694=0.03%,PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,FEZ1->chr11:125315646-125366213:-,fasciculation_and_elongation_protein_zeta_1	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	PRRC2C--RP11-466F5.8	2	0	PRRC2C	34943	chr1:171549103:+	RP11-466F5.8	47925	chr1:165742711:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C,RP11-466F5.8->chr1:165738166-165744413:+	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	RASA4B--RNF41	2	0	RASA4B	7730	chr7:102141146:-	RNF41	29157	chr12:56602082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RASA4B->RAS_p21_protein_activator_4B,chr7:102122892-102158228:-,RNF41->chr12:56598285-56615717:-,ring_finger_protein_41	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	RIC8A--CCNL1	2	0	RIC8A	2428	chr11:208938:+	CCNL1	20133	chr3:156868170:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RIC8A->RIC8_guanine_nucleotide_exchange_factor_A,chr11:207511-215113:+,CCNL1->chr3:156864297-156878549:-,cyclin_L1	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	RLF--TDRD7	2	0	RLF	5837	chr1:40668286:+	TDRD7	35608	chr9:100245131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,TDRD7->chr9:100174232-100258407:+,tudor_domain_containing_7	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	RP11-135A1.2--RP1-179N16.6	2	0	RP11-135A1.2	1068	chr3:193848923:-	RP1-179N16.6	5622	chr6:36163947:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RP11-135A1.2->chr3:193848405-193848990:-,RP1-179N16.6->chr6:36114475-36164982:-	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	RP5-1112D6.4--EIF2S1	2	0	RP5-1112D6.4	1227	chr6:111599361:+	EIF2S1	12672	chr14:67849164:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RP5-1112D6.4->chr6:111599135-111599945:+,EIF2S1->chr14:67826714-67853233:+,eukaryotic_translation_initiation_factor_2_subunit_alpha	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	RPL30--LAPTM4B	2	0	RPL30	2527	chr8:99057171:-	LAPTM4B	17876	chr8:98863625:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	CORL24_LUNG	1	1	0.0232	TRUE	0	1	0	5	0	TRUE	ACH-000382
CORL24_LUNG	SEPT2--STXBP5L	2	0	SEPT2	9377	chr2:242274627:+	STXBP5L	25072	chr3:120628418:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2,STXBP5L->chr3:120626919-121143608:+,syntaxin_binding_protein_5_like	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	TCF4--DYRK1A	2	0	TCF4	16813	chr18:53128250:-	DYRK1A	63934	chr21:38792601:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TCF4->chr18:52889562-53332018:-,transcription_factor_4,DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	TUBA1B--RBM17	2	0	TUBA1B	1100	chr12:49525081:-	RBM17	11998	chr10:6146894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,RBM17->RNA_binding_motif_protein_17,chr10:6130950-6159420:+	CORL24_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000382
CORL24_LUNG	DNM2--QTRT1	1	3	DNM2	1325	chr19:10829079:+	QTRT1	41366	chr19:10812626:+	ONLY_REF_SPLICE	NO	103	93	0.04	0.04	0.0116	0.0348	LOCAL_REARRANGEMENT:+:[4642],DNM2->chr19:10828755-10944164:+,dynamin_2,QTRT1->chr19:10812106-10824113:+,queuine_tRNA-ribosyltransferase_catalytic_subunit_1	CORL24_LUNG	0.04	0.04	0.0464	TRUE	0	2	0	2	1	FALSE	ACH-000382
CORL24_LUNG	AC104820.2--ITGA4	1	2	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	NO	3	12	0.5	0.2	0.0116	0.0232	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	CORL24_LUNG	0.2	0.5	0.0348	FALSE	0	0	0	19	0	FALSE	ACH-000382
CORL24_LUNG	CCNY--CREM	1	2	CCNY	7835	chr10:35626135:+	CREM	36699	chr10:35467817:+	ONLY_REF_SPLICE	NO	96	44	0.03	0.06	0.0116	0.0232	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:+:[34067],CCNY->chr10:35535953-35860852:+,cyclin_Y,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	CORL24_LUNG	0.03	0.06	0.0348	TRUE	0	0	0	1	0	FALSE	ACH-000382
CORL24_LUNG	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	2	1	0.6	0.0116	0.0232	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CORL24_LUNG	0.6	1	0.0348	FALSE	1	20	0	46	0	FALSE	ACH-000382
CORL24_LUNG	C14orf37--PSMA3	1	1	C14orf37	1185	chr14:58764673:-	PSMA3	28539	chr14:58730423:+	ONLY_REF_SPLICE	YES	0	252	1	0.01	0.0116	0.0116	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	CORL24_LUNG	0.01	1	0.0232	FALSE	0	0	0	2	0	FALSE	ACH-000382
CORL24_LUNG	CTNNB1--TRAK1	1	1	CTNNB1	3896	chr3:41241161:+	TRAK1	24305	chr3:42128596:+	ONLY_REF_SPLICE	YES	314	6	0.01	0.25	0.0116	0.0116	CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,TRAK1->chr3:42055294-42267381:+,trafficking_protein,_kinesin_binding_1	CORL24_LUNG	0.01	0.25	0.0232	FALSE	0	0	0	2	0	FALSE	ACH-000382
CORL24_LUNG	NRG1--NRG1-IT1	1	1	NRG1	2344	chr8:31498245:+	NRG1-IT1	37780	chr8:31996731:+	ONLY_REF_SPLICE	NO	11	0	0.15	1	0.0116	0.0116	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+	CORL24_LUNG	0.15	1	0.0232	TRUE	0	3	0	4	3	TRUE	ACH-000382
PATU8988S_PANCREAS	MT-TA--MT-TN	202	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.8838	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PATU8988S_PANCREAS	1	1	1.8838	FALSE	369	2501	205	193	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	122	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1377	0.0373	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	1	1	1.175	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	TIMM23B--LINC00843	99	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9232	0.1772	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PATU8988S_PANCREAS	0.99	1	1.1004	TRUE	508	994	45	981	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TC	76	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7087	0.056	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PATU8988S_PANCREAS	1	1	0.7647	FALSE	462	80	0	856	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	15	234	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	40	0	0.86	1	0.1399	2.1822	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.86	1	2.3221	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	7	242	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	39	0	0.86	1	0.0653	2.2568	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.86	1	2.3221	FALSE	344	827	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	5	247	MT-ND4	1519	chrM:11278:+	MT-ND4L	5394	chrM:10485:+	INCL_NON_REF_SPLICE	YES	685	0	0.27	1	0.0466	2.3034	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.27	1	2.35	FALSE	344	827	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	3	250	MT-ND4	1793	chrM:11552:+	MT-ND4L	5383	chrM:10474:+	INCL_NON_REF_SPLICE	YES	6714	0	0.04	1	0.028	2.3314	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.04	1	2.3594	FALSE	344	827	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	4	242	MT-ND4	1222	chrM:10981:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	40	0	0.86	1	0.0373	2.2568	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.86	1	2.2941	FALSE	344	827	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	4	241	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	39	0	0.86	1	0.0373	2.2475	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.86	1	2.2848	FALSE	344	827	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	3	244	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	551	0	0.31	1	0.028	2.2755	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.31	1	2.3035	FALSE	344	827	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	4	239	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	30	0	0.89	1	0.0373	2.2288	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.89	1	2.2661	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	3	242	MT-ND4	1222	chrM:10981:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	40	0	0.86	1	0.028	2.2568	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.86	1	2.2848	FALSE	344	827	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	3	242	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	40	0	0.86	1	0.028	2.2568	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.86	1	2.2848	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	3	240	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	NO	37	0	0.87	1	0.028	2.2382	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.87	1	2.2662	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	3	239	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	30	0	0.89	1	0.028	2.2288	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.89	1	2.2568	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	TIMM23--RP11-464F9.1	62	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	172	6	0.27	0.91	0.5782	0.0093	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PATU8988S_PANCREAS	0.27	0.91	0.5875	TRUE	519	3926	326	965	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	3	233	MT-ND4	1114	chrM:10873:+	MT-ND4L	5509	chrM:10600:+	INCL_NON_REF_SPLICE	YES	20	0	0.92	1	0.028	2.1729	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.92	1	2.2009	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	4	226	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	18	0	0.93	1	0.0373	2.1076	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.93	1	2.1449	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	5	208	MT-ND4	1092	chrM:10851:+	MT-ND4L	5537	chrM:10628:+	INCL_NON_REF_SPLICE	YES	15	0	0.93	1	0.0466	1.9397	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.93	1	1.9863	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	53	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4943	0.028	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	1	1	0.5223	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	4	198	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	14	0	0.94	1	0.0373	1.8465	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.94	1	1.8838	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	OR51S1--TP53I11	51	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4756	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	PATU8988S_PANCREAS	1	1	0.4756	TRUE	402	216	10	229	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	8	170	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	13	0	0.93	1	0.0746	1.5854	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.93	1	1.66	FALSE	344	821	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	42	27	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.95	1	0.3917	0.2518	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	0.95	1	0.6435	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	3	166	MT-ND4	1093	chrM:10852:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	15	0	0.92	1	0.028	1.5481	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.92	1	1.5761	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	3	164	MT-ND4	1466	chrM:11225:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	360	0	0.32	1	0.028	1.5294	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.32	1	1.5574	FALSE	344	827	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	3	164	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	18	0	0.9	1	0.028	1.5294	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.9	1	1.5574	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	4	159	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	84	0	0.66	1	0.0373	1.4828	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.66	1	1.5201	FALSE	344	827	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	3	153	MT-ND4	1131	chrM:10890:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	24	0	0.87	1	0.028	1.4268	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.87	1	1.4548	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TN	14	101	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1306	0.9419	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PATU8988S_PANCREAS	1	1	1.0725	FALSE	369	2501	205	193	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TN	30	30	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2798	0.2798	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PATU8988S_PANCREAS	1	1	0.5596	FALSE	369	2501	205	193	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	4	133	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	28	0	0.83	1	0.0373	1.2403	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.83	1	1.2776	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	SMARCA4--C19orf44	34	10	SMARCA4	37709	chr19:11152236:+	C19orf44	53380	chr19:16620310:+	ONLY_REF_SPLICE	YES	71	6	0.38	0.88	0.3171	0.0933	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44	PATU8988S_PANCREAS	0.38	0.88	0.4104	TRUE	0	0	0	2	0	TRUE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TN	15	66	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1399	0.6155	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PATU8988S_PANCREAS	1	1	0.7554	FALSE	369	2501	205	193	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TN	19	46	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1772	0.429	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PATU8988S_PANCREAS	1	1	0.6062	FALSE	369	2501	205	193	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	21	34	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8605	0	0.01	1	0.1958	0.3171	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.01	1	0.5129	FALSE	344	827	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TN	18	41	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1679	0.3824	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PATU8988S_PANCREAS	1	1	0.5503	FALSE	369	2501	205	193	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TN	3	97	MT-TA	1055	chrM:5601:-	MT-TN	3986	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.028	0.9046	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PATU8988S_PANCREAS	1	1	0.9326	FALSE	369	2501	205	193	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TC	25	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2331	0.0466	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PATU8988S_PANCREAS	1	1	0.2797	FALSE	462	80	0	856	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	17	34	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	6163	0	0.01	1	0.1585	0.3171	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.01	1	0.4756	FALSE	344	827	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	9	54	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	685	0	0.08	1	0.0839	0.5036	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.08	1	0.5875	FALSE	344	827	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	15	28	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1399	0.2611	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	1	1	0.401	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	13	34	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	409	0	0.1	1	0.1212	0.3171	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.1	1	0.4383	FALSE	344	827	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	10	39	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.0933	0.3637	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	0.92	1	0.457	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	9	39	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	8	0	0.86	1	0.0839	0.3637	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.86	1	0.4476	FALSE	344	821	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-ND5	18	3	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	3878	1	0.01	0.1679	0.028	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PATU8988S_PANCREAS	0.01	1	0.1959	FALSE	101	855	57	72	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	14	14	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	72	0	0.28	1	0.1306	0.1306	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.28	1	0.2612	FALSE	344	827	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	3	57	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.5316	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	1	1	0.5596	FALSE	344	821	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	4	52	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	36	0	0.61	1	0.0373	0.4849	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.61	1	0.5222	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	9	30	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	40	0	0.49	1	0.0839	0.2798	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.49	1	0.3637	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TN	4	49	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0.457	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PATU8988S_PANCREAS	1	1	0.4943	FALSE	369	2501	205	193	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	16	0	MT-ND4	1003	chrM:10762:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1492	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	1	1	0.1492	FALSE	344	821	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	3	52	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	40	0	0.58	1	0.028	0.4849	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.58	1	0.5129	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	NRIP1--AF127936.7	16	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1492	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PATU8988S_PANCREAS	1	1	0.1492	FALSE	292	1546	117	613	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	3	51	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	33	0	0.62	1	0.028	0.4756	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.62	1	0.5036	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-ND5	15	3	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	3696	1	0	0.1399	0.028	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PATU8988S_PANCREAS	0	1	0.1679	FALSE	101	855	57	72	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	7	33	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	36	0	0.53	1	0.0653	0.3077	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.53	1	0.373	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	5	41	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.0466	0.3824	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	0.92	1	0.429	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	3	48	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.4476	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	1	1	0.4756	FALSE	344	821	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TN	15	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1399	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PATU8988S_PANCREAS	1	1	0.1399	FALSE	369	2501	205	193	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TN	14	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1306	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PATU8988S_PANCREAS	1	1	0.1306	FALSE	369	2501	205	193	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TN	4	39	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0.3637	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PATU8988S_PANCREAS	1	1	0.401	FALSE	369	2501	205	193	0	FALSE	ACH-000022
PATU8988S_PANCREAS	RP11-96H19.1--RP11-446N19.1	11	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1026	0.0933	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PATU8988S_PANCREAS	0.95	1	0.1959	FALSE	515	4851	409	746	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	5	32	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	33	0	0.53	1	0.0466	0.2984	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.53	1	0.345	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TC	13	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1212	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PATU8988S_PANCREAS	1	1	0.1212	FALSE	462	80	0	856	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	8	16	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0746	0.1492	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	0.92	1	0.2238	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TN	12	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1119	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PATU8988S_PANCREAS	1	1	0.1119	FALSE	369	2501	205	193	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	4	31	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0373	0.2891	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	0.92	1	0.3264	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	11	1	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	5	0	0.71	1	0.1026	0.0093	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.71	1	0.1119	FALSE	344	821	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	7	14	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	40	0	0.34	1	0.0653	0.1306	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.34	1	0.1959	FALSE	344	826	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TC	9	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0.056	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PATU8988S_PANCREAS	1	1	0.1399	FALSE	462	80	0	856	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	3	29	MT-ND6	1126	chrM:14548:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.028	0.2704	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	0.94	1	0.2984	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	3	27	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.2518	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	1	1	0.2798	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TN	9	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PATU8988S_PANCREAS	1	1	0.0839	FALSE	369	2501	205	193	0	FALSE	ACH-000022
PATU8988S_PANCREAS	RP11-96H19.1--RP11-446N19.1	6	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.056	0.1026	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PATU8988S_PANCREAS	0.94	1	0.1586	FALSE	407	2205	196	549	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	4	17	MT-ND6	1261	chrM:14413:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.0373	0.1585	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	0.81	1	0.1958	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	8	1	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0746	0.0093	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	1	1	0.0839	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-ND5	8	0	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0746	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PATU8988S_PANCREAS	1	1	0.0746	FALSE	101	855	57	72	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	8	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0746	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	1	1	0.0746	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	8	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0746	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	1	1	0.0746	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	7	3	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	8	0	0.56	1	0.0653	0.028	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.56	1	0.0933	FALSE	344	821	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	SMARCA4--C19orf44	7	3	SMARCA4	37709	chr19:11152236:+	C19orf44	54870	chr19:16623825:+	ONLY_REF_SPLICE	YES	71	12	0.12	0.45	0.0653	0.028	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44	PATU8988S_PANCREAS	0.12	0.45	0.0933	TRUE	0	0	0	2	0	TRUE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	3	18	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.1679	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	1	1	0.1959	FALSE	344	821	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	SAMD5--SASH1	7	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	12	0	0.4	1	0.0653	0.0093	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	PATU8988S_PANCREAS	0.4	1	0.0746	TRUE	53	396	64	110	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND3--MT-TG	7	0	MT-ND3	1026	chrM:10084:+	MT-TG	4396	chrM:10040:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0653	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	PATU8988S_PANCREAS	1	1	0.0653	FALSE	97	9	0	14	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	7	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0653	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	1	1	0.0653	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	7	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0653	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	1	1	0.0653	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	RP11-123O10.4--GRIP1	7	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0653	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PATU8988S_PANCREAS	1	1	0.0653	FALSE	416	2512	207	587	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	6	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0.028	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	1	1	0.084	FALSE	344	821	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	6	2	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.056	0.0187	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	0.8	1	0.0747	FALSE	344	821	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TC	5	6	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0.056	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PATU8988S_PANCREAS	1	1	0.1026	FALSE	462	80	0	856	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	6	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0.0093	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	1	1	0.0653	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND3--MT-TG	6	0	MT-ND3	1063	chrM:10121:+	MT-TG	4390	chrM:10034:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	PATU8988S_PANCREAS	1	1	0.056	FALSE	97	9	0	14	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PATU8988S_PANCREAS	1	1	0.056	FALSE	499	1288	110	792	0	FALSE	ACH-000022
PATU8988S_PANCREAS	NRIP1--AF127936.7	6	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.056	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PATU8988S_PANCREAS	1	1	0.056	FALSE	125	705	46	456	0	FALSE	ACH-000022
PATU8988S_PANCREAS	NRIP1--AF127936.7	5	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	19	0	0.3	1	0.0466	0.028	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PATU8988S_PANCREAS	0.3	1	0.0746	FALSE	164	806	69	479	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-ND5	5	1	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	790	1	0.01	0.0466	0.0093	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PATU8988S_PANCREAS	0.01	1	0.0559	FALSE	101	855	57	72	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND5--MT-ND6	4	4	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	2	4515	0.8	0	0.0373	0.0373	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	PATU8988S_PANCREAS	0	0.8	0.0746	FALSE	26	124	4	93	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-ND5	5	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PATU8988S_PANCREAS	1	1	0.0466	FALSE	101	855	57	72	0	FALSE	ACH-000022
PATU8988S_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	14	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0093	0.1306	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PATU8988S_PANCREAS	1	1	0.1399	FALSE	76	45	6	15	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND2--MT-TM	4	1	MT-ND2	1086	chrM:4555:+	MT-TM	5098	chrM:4457:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0373	0.0093	LOCAL_REARRANGEMENT:+:[1],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-TM->chrM:4402-4469:+,mitochondrially_encoded_tRNA_methionine	PATU8988S_PANCREAS	0.83	1	0.0466	FALSE	74	23	0	9	0	FALSE	ACH-000022
PATU8988S_PANCREAS	DNAJC2--SLC26A5	4	0	DNAJC2	1315	chr7:102985006:-	SLC26A5	41353	chr7:102993373:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	LOCAL_REARRANGEMENT:-:[7857],DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-,SLC26A5->chr7:102993177-103086624:-,solute_carrier_family_26_member_5	PATU8988S_PANCREAS	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000022
PATU8988S_PANCREAS	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PATU8988S_PANCREAS	1	1	0.0373	FALSE	344	821	44	306	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TN	4	0	MT-TA	1031	chrM:5625:-	MT-TN	4091	chrM:5708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PATU8988S_PANCREAS	1	1	0.0373	FALSE	369	2501	205	193	0	FALSE	ACH-000022
PATU8988S_PANCREAS	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PATU8988S_PANCREAS	1	1	0.0373	FALSE	25	145	6	90	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-ND5	3	3	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	2285	1	0	0.028	0.028	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PATU8988S_PANCREAS	0	1	0.056	FALSE	101	855	57	72	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND3--MT-TG	3	1	MT-ND3	1053	chrM:10111:+	MT-TG	4380	chrM:10024:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.0093	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	PATU8988S_PANCREAS	1	1	0.0373	FALSE	97	9	0	14	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TC	3	1	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.0093	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PATU8988S_PANCREAS	1	1	0.0373	FALSE	462	80	0	856	0	FALSE	ACH-000022
PATU8988S_PANCREAS	ARMC4P1--RP11-748L13.2	3	0	ARMC4P1	5853	chr10:27577753:+	RP11-748L13.2	13614	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	LOCAL_INVERSION:+:-:[42533],ARMC4P1->armadillo_repeat_containing_4_pseudogene_1,chr10:27547691-27577753:+,RP11-748L13.2->chr10:27620286-27630181:-	PATU8988S_PANCREAS	1	1	0.028	TRUE	1	34	11	8	34	TRUE	ACH-000022
PATU8988S_PANCREAS	MBD1--SERPINB6	3	0	MBD1	4710	chr18:47802748:-	SERPINB6	26303	chr6:2948933:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	MBD1->chr18:47793252-47808144:-,methyl-CpG_binding_domain_protein_1,SERPINB6->chr6:2948393-2972090:-,serpin_family_B_member_6	PATU8988S_PANCREAS	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000022
PATU8988S_PANCREAS	MT-ND2--MT-TM	3	0	MT-ND2	1017	chrM:4486:+	MT-TM	5076	chrM:4435:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	LOCAL_REARRANGEMENT:+:[1],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-TM->chrM:4402-4469:+,mitochondrially_encoded_tRNA_methionine	PATU8988S_PANCREAS	1	1	0.028	FALSE	74	23	0	9	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-ND6--MT-ND5	3	0	MT-ND6	1070	chrM:14604:-	MT-ND5	6323	chrM:14134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PATU8988S_PANCREAS	1	1	0.028	FALSE	101	855	57	72	0	FALSE	ACH-000022
PATU8988S_PANCREAS	MT-TA--MT-TN	3	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PATU8988S_PANCREAS	1	1	0.028	FALSE	369	2501	205	193	0	FALSE	ACH-000022
PATU8988S_PANCREAS	RP11-732M18.3--BCLAF1	3	0	RP11-732M18.3	1116	chr6:158703410:+	BCLAF1	20281	chr6:136582615:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	RP11-732M18.3->chr6:158703295-158733390:+,BCLAF1->BCL2_associated_transcription_factor_1,chr6:136578001-136610989:-	PATU8988S_PANCREAS	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000022
PATU8988S_PANCREAS	FBRSL1--NOC4L	2	1	FBRSL1	4632	chr12:133084936:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	54	46	0.05	0.06	0.0187	0.0093	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	PATU8988S_PANCREAS	0.05	0.06	0.028	TRUE	1	3	0	1	0	FALSE	ACH-000022
PATU8988S_PANCREAS	SMARCA4--C19orf44	2	1	SMARCA4	37709	chr19:11152236:+	C19orf44	55966	chr19:16625308:+	ONLY_REF_SPLICE	YES	71	19	0.04	0.14	0.0187	0.0093	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44	PATU8988S_PANCREAS	0.04	0.14	0.028	TRUE	0	0	0	2	0	FALSE	ACH-000022
PATU8988S_PANCREAS	XKR9--RP11-326E22.1	2	1	XKR9	8344	chr8:71619388:+	RP11-326E22.1	21087	chr8:72111375:+	ONLY_REF_SPLICE	NO	48	0	0.06	1	0.0187	0.0093	GTEx_FI:{Brain=[count:4=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Liver=[count:1=pct:0.8]},XKR9->XK_related_9,chr8:71581600-71702606:+,RP11-326E22.1->chr8:72067692-72116458:+	PATU8988S_PANCREAS	0.06	1	0.028	TRUE	5	29	0	13	0	FALSE	ACH-000022
PATU8988S_PANCREAS	C17orf76-AS1--MKI67	2	0	C17orf76-AS1	1593	chr17:16342728:+	MKI67	16302	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	C17orf76-AS1->chr17:16342136-16381992:+,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	PATU8988S_PANCREAS	1	1	0.0187	TRUE	0	0	0	2	0	TRUE	ACH-000022
PATU8988S_PANCREAS	COPS2--GALK2	2	0	COPS2	1137	chr15:49447722:-	GALK2	33365	chr15:49528048:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Brain_-_Frontal_Cortex_(BA9)=1,Esophagus_-_Gastroesophageal_Junction=1},NEIGHBORS_OVERLAP:-:+:[5],COPS2->COP9_signalosome_subunit_2,Oncogene{Bushman},chr15:49398268-49447858:-,GALK2->chr15:49447853-49660066:+,galactokinase_2	PATU8988S_PANCREAS	1	1	0.0187	FALSE	0	2	0	2	0	FALSE	ACH-000022
PATU8988S_PANCREAS	ELAC1--AKAP7	2	0	ELAC1	4905	chr18:48510933:+	AKAP7	14307	chr6:131481199:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	ELAC1->chr18:48494361-48514491:+,elaC_ribonuclease_Z_1,AKAP7->A-kinase_anchoring_protein_7,chr6:131456806-131604675:+	PATU8988S_PANCREAS	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000022
PATU8988S_PANCREAS	GPATCH1--PEPD	2	0	GPATCH1	1387	chr19:33572172:+	PEPD	31610	chr19:33980963:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GPATCH1->G-patch_domain_containing_1,chr19:33571786-33621448:+,PEPD->chr19:33877856-34012700:-,peptidase_D	PATU8988S_PANCREAS	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000022
PATU8988S_PANCREAS	HN1L--UBE2I	2	0	HN1L	1101	chr16:1728357:+	UBE2I	22624	chr16:1364021:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	PATU8988S_PANCREAS	1	1	0.0187	TRUE	0	0	0	2	0	TRUE	ACH-000022
PATU8988S_PANCREAS	HNRNPH1--FUS	2	0	HNRNPH1	4526	chr5:179050038:-	FUS	23431	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},HGNC_GENEFAM,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	PATU8988S_PANCREAS	1	1	0.0187	TRUE	1	1	0	2	0	TRUE	ACH-000022
PATU8988S_PANCREAS	SLIRP--CKLF	2	0	SLIRP	4730	chr14:78182222:+	CKLF	15377	chr16:66592093:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	SLIRP->SRA_stem-loop_interacting_RNA_binding_protein,chr14:78174414-78227447:+,CKLF->chemokine-like_factor,chr16:66586466-66600154:+	PATU8988S_PANCREAS	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000022
PATU8988S_PANCREAS	FBRSL1--NOC4L	1	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	45	46	0.04	0.04	0.0093	0.0093	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	PATU8988S_PANCREAS	0.04	0.04	0.0186	TRUE	3	48	0	26	0	FALSE	ACH-000022
PATU8988S_PANCREAS	KLHL24--ABCC5	1	1	KLHL24	1180	chr3:183353535:+	ABCC5	45256	chr3:183671058:-	ONLY_REF_SPLICE	YES	8	28	0.2	0.07	0.0093	0.0093	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},KLHL24->chr3:183353356-183402265:+,kelch_like_family_member_24,ABCC5->ATP_binding_cassette_subfamily_C_member_5,chr3:183637722-183735803:-	PATU8988S_PANCREAS	0.07	0.2	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000022
PATU8988S_PANCREAS	RHOA--DAG1	1	1	RHOA	2179	chr3:49449253:-	DAG1	21789	chr3:49547852:+	ONLY_REF_SPLICE	YES	1066	153	0	0.01	0.0093	0.0093	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[55715],RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,DAG1->chr3:49506146-49573048:+,dystroglycan_1	PATU8988S_PANCREAS	0	0.01	0.0186	FALSE	0	0	0	8	0	FALSE	ACH-000022
PATU8988S_PANCREAS	SS18L1--TAF4	1	1	SS18L1	1124	chr20:60718945:+	TAF4	21561	chr20:60589763:-	ONLY_REF_SPLICE	YES	19	19	0.1	0.1	0.0093	0.0093	GTEx_FI:{Skin=[count:2=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Pancreas=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[77956],SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-	PATU8988S_PANCREAS	0.1	0.1	0.0186	TRUE	2	5	0	8	0	FALSE	ACH-000022
OV90_OVARY	TIMM23B--LINC00843	75	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9303	0.2729	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OV90_OVARY	1	1	1.2032	TRUE	508	994	45	981	0	FALSE	ACH-000291
OV90_OVARY	STMND1--SNAP29	66	0	STMND1	2355	chr6:17110999:+	SNAP29	20802	chr22:21245338:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8187	0	STMND1->chr6:17102489-17131603:+,stathmin_domain_containing_1,SNAP29->chr22:21213271-21245506:+,synaptosome_associated_protein_29kDa	OV90_OVARY	1	1	0.8187	TRUE	0	0	0	1	0	TRUE	ACH-000291
OV90_OVARY	TM2D2--ADAM9	62	0	TM2D2	1406	chr8:38853938:-	ADAM9	12229	chr8:38865405:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.7691	0	LOCAL_INVERSION:-:+:[45],TM2D2->TM2_domain_containing_2,chr8:38846327-38854343:-,ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+	OV90_OVARY	1	1	0.7691	TRUE	0	0	0	1	0	TRUE	ACH-000291
OV90_OVARY	MT-TA--MT-TN	51	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6326	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV90_OVARY	1	1	0.6326	FALSE	369	2501	205	193	0	FALSE	ACH-000291
OV90_OVARY	TIMM23--RP11-464F9.1	45	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	201	0	0.19	1	0.5582	0.0248	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OV90_OVARY	0.19	1	0.583	TRUE	519	3926	326	965	0	FALSE	ACH-000291
OV90_OVARY	MT-ND6--MT-TE	43	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5334	0.062	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV90_OVARY	1	1	0.5954	FALSE	499	1288	110	792	0	FALSE	ACH-000291
OV90_OVARY	MT-TA--MT-TC	41	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5086	0.0372	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OV90_OVARY	1	1	0.5458	FALSE	462	80	0	856	0	FALSE	ACH-000291
OV90_OVARY	MT-ND6--MT-TE	32	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3969	0.0744	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV90_OVARY	1	1	0.4713	FALSE	499	1288	110	792	0	FALSE	ACH-000291
OV90_OVARY	AC104389.28--HBE1	27	24	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	1	1	0.98	0.98	0.3349	0.2977	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	OV90_OVARY	0.98	0.98	0.6326	TRUE	0	48	0	65	48	FALSE	ACH-000291
OV90_OVARY	MT-ND6--MT-TE	24	27	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.93	1	0.2977	0.3349	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV90_OVARY	0.93	1	0.6326	FALSE	499	1288	110	792	0	FALSE	ACH-000291
OV90_OVARY	MT-ND6--MT-ND5	25	1	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	3472	1	0.01	0.3101	0.0124	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	OV90_OVARY	0.01	1	0.3225	FALSE	101	855	57	72	0	FALSE	ACH-000291
OV90_OVARY	MT-TA--MT-TN	15	41	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1861	0.5086	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV90_OVARY	1	1	0.6947	FALSE	369	2501	205	193	0	FALSE	ACH-000291
OV90_OVARY	ZNF654--HMGB2	25	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3101	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OV90_OVARY	1	1	0.3101	TRUE	0	0	0	518	0	FALSE	ACH-000291
OV90_OVARY	MT-TA--MT-TN	6	63	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0744	0.7815	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV90_OVARY	1	1	0.8559	FALSE	369	2501	205	193	0	FALSE	ACH-000291
OV90_OVARY	MT-TA--MT-TN	13	23	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1613	0.2853	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV90_OVARY	1	1	0.4466	FALSE	369	2501	205	193	0	FALSE	ACH-000291
OV90_OVARY	OR51S1--TP53I11	18	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2233	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	OV90_OVARY	1	1	0.2233	TRUE	402	216	10	229	0	FALSE	ACH-000291
OV90_OVARY	MT-ND6--MT-TE	12	20	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1488	0.2481	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV90_OVARY	1	1	0.3969	FALSE	499	1288	110	792	0	FALSE	ACH-000291
OV90_OVARY	MT-ND6--MT-TE	8	35	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.0992	0.4341	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV90_OVARY	0.91	1	0.5333	FALSE	499	1288	110	792	0	FALSE	ACH-000291
OV90_OVARY	MT-ND6--MT-TE	6	35	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.0744	0.4341	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV90_OVARY	0.91	1	0.5085	FALSE	499	1288	110	792	0	FALSE	ACH-000291
OV90_OVARY	CDK14--RP11-115N4.1	12	3	CDK14	25131	chr7:90708795:+	RP11-115N4.1	41881	chr7:91096160:+	ONLY_REF_SPLICE	YES	16	0	0.48	1	0.1488	0.0372	CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14,RP11-115N4.1->chr7:90940683-91144724:+	OV90_OVARY	0.48	1	0.186	TRUE	0	0	0	1	0	TRUE	ACH-000291
OV90_OVARY	MT-TA--MT-TN	5	30	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.062	0.3721	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV90_OVARY	1	1	0.4341	FALSE	369	2501	205	193	0	FALSE	ACH-000291
OV90_OVARY	AC104389.28--HBE1	6	25	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.0744	0.3101	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	OV90_OVARY	0.97	1	0.3845	TRUE	0	35	0	55	35	FALSE	ACH-000291
OV90_OVARY	MT-TA--MT-TN	12	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1488	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV90_OVARY	1	1	0.1488	FALSE	369	2501	205	193	0	FALSE	ACH-000291
OV90_OVARY	MT-ND6--MT-TE	11	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1364	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV90_OVARY	1	1	0.1364	FALSE	499	1288	110	792	0	FALSE	ACH-000291
OV90_OVARY	MT-TA--MT-TC	9	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1116	0.0496	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OV90_OVARY	1	1	0.1612	FALSE	462	80	0	856	0	FALSE	ACH-000291
OV90_OVARY	MT-ND6--MT-TE	3	27	MT-ND6	1199	chrM:14475:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.0372	0.3349	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV90_OVARY	0.88	1	0.3721	FALSE	499	1288	110	792	0	FALSE	ACH-000291
OV90_OVARY	HSPBP1--GRK5	9	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1116	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	OV90_OVARY	1	1	0.1116	TRUE	1	39	0	134	39	FALSE	ACH-000291
OV90_OVARY	MT-TA--MT-TN	8	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0992	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV90_OVARY	1	1	0.0992	FALSE	369	2501	205	193	0	FALSE	ACH-000291
OV90_OVARY	RP11-96H19.1--RP11-446N19.1	7	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0868	0.0496	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OV90_OVARY	0.92	1	0.1364	FALSE	515	4851	409	746	0	FALSE	ACH-000291
OV90_OVARY	GNGT1--AC002076.10	7	2	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	22	0	0.29	1	0.0868	0.0248	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	OV90_OVARY	0.29	1	0.1116	FALSE	0	10	0	30	0	FALSE	ACH-000291
OV90_OVARY	MT-ND6--MT-ND5	7	1	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1900	1	0	0.0868	0.0124	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	OV90_OVARY	0	1	0.0992	FALSE	101	855	57	72	0	FALSE	ACH-000291
OV90_OVARY	DPH6-AS1--RP11-684B21.1	7	0	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0868	0	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	OV90_OVARY	1	1	0.0868	TRUE	17	119	17	33	0	FALSE	ACH-000291
OV90_OVARY	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0744	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV90_OVARY	1	1	0.0744	FALSE	499	1288	110	792	0	FALSE	ACH-000291
OV90_OVARY	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0744	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OV90_OVARY	1	1	0.0744	FALSE	462	80	0	856	0	FALSE	ACH-000291
OV90_OVARY	CTD-2008L17.1--RP11-456O19.2	5	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.062	0.0124	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	OV90_OVARY	1	1	0.0744	FALSE	20	187	4	79	0	FALSE	ACH-000291
OV90_OVARY	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.062	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	OV90_OVARY	1	1	0.062	TRUE	22	156	2	142	0	FALSE	ACH-000291
OV90_OVARY	RP11-155G15.2--RP11-1E3.1	5	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.062	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	OV90_OVARY	1	1	0.062	FALSE	46	201	11	112	0	FALSE	ACH-000291
OV90_OVARY	MT-ND6--MT-ND5	4	1	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	4	1853	0.56	0	0.0496	0.0124	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	OV90_OVARY	0	0.56	0.062	FALSE	101	855	57	72	0	FALSE	ACH-000291
OV90_OVARY	AC104389.28--HBE1	4	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0496	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	OV90_OVARY	1	1	0.0496	TRUE	0	16	0	53	13	FALSE	ACH-000291
OV90_OVARY	CRKL--SNAP29	4	0	CRKL	3286	chr22:21288532:+	SNAP29	16874	chr22:21241967:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0496	0	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[26208],CRKL->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:21271714-21308037:+,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog-like,SNAP29->chr22:21213271-21245506:+,synaptosome_associated_protein_29kDa	OV90_OVARY	1	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000291
OV90_OVARY	MT-ND6--MT-ND5	4	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	OV90_OVARY	1	1	0.0496	FALSE	101	855	57	72	0	FALSE	ACH-000291
OV90_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV90_OVARY	1	1	0.0496	FALSE	499	1288	110	792	0	FALSE	ACH-000291
OV90_OVARY	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0.0496	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OV90_OVARY	1	1	0.0868	FALSE	462	80	0	856	0	FALSE	ACH-000291
OV90_OVARY	PAK4--MT-ND4L	4	0	PAK4	12918	chr19:39669187:+	MT-ND4L	20189	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV90_OVARY	1	1	0.0496	FALSE	0	0	0	7	0	FALSE	ACH-000291
OV90_OVARY	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0.0496	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OV90_OVARY	1	1	0.0868	FALSE	407	2205	196	549	0	FALSE	ACH-000291
OV90_OVARY	SLC1A5--MT-ND4L	4	0	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV90_OVARY	1	1	0.0496	FALSE	0	0	0	189	0	FALSE	ACH-000291
OV90_OVARY	SLC1A5--MT-ND4L	4	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OV90_OVARY	1	1	0.0496	FALSE	0	0	0	189	0	FALSE	ACH-000291
OV90_OVARY	GNGT1--AC002076.10	3	2	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	20	0	0.2	1	0.0372	0.0248	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	OV90_OVARY	0.2	1	0.062	FALSE	0	28	0	37	0	FALSE	ACH-000291
OV90_OVARY	MT-TA--MT-TC	3	2	MT-TA	1063	chrM:5593:-	MT-TC	4102	chrM:5794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0.0248	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OV90_OVARY	1	1	0.062	FALSE	462	80	0	856	0	FALSE	ACH-000291
OV90_OVARY	AC006486.9--PPP1R12C	3	0	AC006486.9	1155	chr19:42759130:-	PPP1R12C	17455	chr19:55607703:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2]},AC006486.9->chr19:42738735-42759284:-,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	OV90_OVARY	1	1	0.0372	TRUE	2	0	0	1	0	FALSE	ACH-000291
OV90_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV90_OVARY	1	1	0.0372	FALSE	499	1288	110	792	0	FALSE	ACH-000291
OV90_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OV90_OVARY	1	1	0.0372	FALSE	499	1288	110	792	0	FALSE	ACH-000291
OV90_OVARY	MT-TA--MT-TN	3	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OV90_OVARY	1	1	0.0372	FALSE	369	2501	205	193	0	FALSE	ACH-000291
OV90_OVARY	RP11-1L12.3--SLC5A12	1	8	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	11	0	0.45	1	0.0124	0.0992	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	OV90_OVARY	0.45	1	0.1116	TRUE	3	101	0	60	0	FALSE	ACH-000291
OV90_OVARY	CTD-2008L17.1--RP11-456O19.2	2	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0.0124	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	OV90_OVARY	1	1	0.0372	FALSE	33	240	4	98	0	FALSE	ACH-000291
OV90_OVARY	RP11-319G9.5--WWOX	2	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	41	1	0.07	0.0248	0.0124	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	OV90_OVARY	0.07	1	0.0372	FALSE	154	425	28	76	0	FALSE	ACH-000291
OV90_OVARY	ANKRD11--BBOX1	2	0	ANKRD11	4629	chr16:89484692:-	BBOX1	41223	chr11:27076943:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,BBOX1->chr11:27062272-27149356:+,gamma-butyrobetaine_hydroxylase_1	OV90_OVARY	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000291
OV90_OVARY	FBXO46--ATP6V1A	2	0	FBXO46	1056	chr19:46234107:-	ATP6V1A	11645	chr3:113497588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	FBXO46->F-box_protein_46,chr19:46213887-46234162:-,ATP6V1A->ATPase_H+_transporting_V1_subunit_A,chr3:113465866-113530903:+	OV90_OVARY	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000291
OV90_OVARY	PDDC1--TSPAN4	2	0	PDDC1	1090	chr11:777399:-	TSPAN4	19122	chr11:850288:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	LOCAL_INVERSION:-:+:[65320],PDDC1->Parkinson_disease_7_domain_containing_1,chr11:767220-777488:-,TSPAN4->chr11:842808-867116:+,tetraspanin_4	OV90_OVARY	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000291
OV90_OVARY	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OV90_OVARY	1	1	0.0248	FALSE	16	356	14	466	0	FALSE	ACH-000291
OV90_OVARY	CDK14--RP11-115N4.1	1	3	CDK14	25131	chr7:90708795:+	RP11-115N4.1	42915	chr7:91143043:+	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.0124	0.0372	CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14,RP11-115N4.1->chr7:90940683-91144724:+	OV90_OVARY	0.2	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000291
OV90_OVARY	CPSF6--CHMP1A	1	1	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	194	350	0.01	0.01	0.0124	0.0124	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	OV90_OVARY	0.01	0.01	0.0248	FALSE	95	74	6	34	0	FALSE	ACH-000291
OV90_OVARY	RAB5A--C8orf34	1	1	RAB5A	3041	chr3:19992553:+	C8orf34	37852	chr8:69728121:+	ONLY_REF_SPLICE	NO	33	0	0.06	1	0.0124	0.0124	RAB5A->RAB5A,_member_RAS_oncogene_family,chr3:19988571-20026667:+,C8orf34->chr8:69242957-69731257:+,chromosome_8_open_reading_frame_34	OV90_OVARY	0.06	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000291
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UHRF1--PLIN3	125	98	UHRF1	2792	chr19:4909667:+	PLIN3	22254	chr19:4867730:-	INCL_NON_REF_SPLICE	YES	146	0	0.6	1	1.7609	1.3805	LOCAL_INVERSION:+:-:[35312],UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1,PLIN3->chr19:4838353-4867780:-,perilipin_3	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	3.1414	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	39	10	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5494	0.1409	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6903	TRUE	508	994	45	981	0	FALSE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRBV5-6--TRBC2	30	21	TRBV5-6	1322	chr7:142131597:-	TRBC2	4508	chr7:142498725:+	INCL_NON_REF_SPLICE	YES	129	0	0.28	1	0.4226	0.2958	HGNC_GENEFAM,TRBV5-6->T_cell_receptor_beta_variable_5-6,chr7:142131412-142131918:-,TRBC2->T_cell_receptor_beta_constant_2,chr7:142498725-142500432:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	1	0.7184	TRUE	0	3	0	1	3	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	28	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	43	0	0.41	1	0.3944	0.0282	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	1	0.4226	TRUE	519	3926	326	965	0	FALSE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAG2--PTGER3	18	5	STAG2	32811	chrX:123217399:+	PTGER3	58428	chr1:71419472:-	ONLY_REF_SPLICE	YES	26	0	0.47	1	0.2536	0.0704	STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,PTGER3->chr1:71318036-71513491:-,prostaglandin_E_receptor_3	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.324	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRBV5-6--TRBC2	5	46	TRBV5-6	1417	chr7:142131502:-	TRBC2	4508	chr7:142498725:+	INCL_NON_REF_SPLICE	YES	52	0	0.5	1	0.0704	0.648	HGNC_GENEFAM,TRBV5-6->T_cell_receptor_beta_variable_5-6,chr7:142131412-142131918:-,TRBC2->T_cell_receptor_beta_constant_2,chr7:142498725-142500432:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.7184	TRUE	0	3	0	1	3	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UHRF1--PLIN3	4	44	UHRF1	2792	chr19:4909667:+	PLIN3	24340	chr19:4861423:-	ONLY_REF_SPLICE	YES	146	12	0.25	0.8	0.0563	0.6198	LOCAL_INVERSION:+:-:[35312],UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1,PLIN3->chr19:4838353-4867780:-,perilipin_3	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.8	0.6761	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV8-4--TRAC	5	24	TRAV8-4	1590	chr14:22363202:+	TRAC	4599	chr14:23016447:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0704	0.3381	HGNC_GENEFAM,TRAV8-4->T_cell_receptor_alpha_variable_8-4,chr14:22362613-22363210:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4085	TRUE	1	0	0	2	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0986	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0986	FALSE	292	1546	117	613	0	FALSE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAG2--PTGER3	3	6	STAG2	32855	chrX:123217443:+	PTGER3	56887	chr1:71437004:-	INCL_NON_REF_SPLICE	YES	29	0	0.24	1	0.0423	0.0845	STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,PTGER3->chr1:71318036-71513491:-,prostaglandin_E_receptor_3	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.1268	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	4	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0563	FALSE	351	233	23	137	0	FALSE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1212A22.1--MT-RNR2	4	0	RP11-1212A22.1	3318	chr16:18445185:-	MT-RNR2	22097	chrM:1678:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0	RP11-1212A22.1->chr16:18428257-18488396:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0563	FALSE	0	0	0	1	0	FALSE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1212A22.1--MT-RNR2	4	0	RP11-1212A22.1	3347	chr16:18445156:-	MT-RNR2	22118	chrM:1699:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0	RP11-1212A22.1->chr16:18428257-18488396:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0563	FALSE	0	0	0	1	0	FALSE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRBV5-6--TRBC2	4	0	TRBV5-6	1090	chr7:142131829:-	TRBC2	5572	chr7:142499789:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0563	0	HGNC_GENEFAM,TRBV5-6->T_cell_receptor_beta_variable_5-6,chr7:142131412-142131918:-,TRBC2->T_cell_receptor_beta_constant_2,chr7:142498725-142500432:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0563	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRBV5-6--TRBC2	3	3	TRBV5-6	1090	chr7:142131829:-	TRBC2	4508	chr7:142498725:+	ONLY_REF_SPLICE	YES	31	0	0.16	1	0.0423	0.0423	HGNC_GENEFAM,TRBV5-6->T_cell_receptor_beta_variable_5-6,chr7:142131412-142131918:-,TRBC2->T_cell_receptor_beta_constant_2,chr7:142498725-142500432:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.0846	TRUE	0	3	0	1	3	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-290D2.6--CNTROB	3	0	RP11-290D2.6	2042	chr13:45915215:+	CNTROB	5523	chr17:7835796:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	RP11-290D2.6->chr13:45914174-45915318:+,CNTROB->centrobin,_centriole_duplication_and_spindle_assembly_protein,chr17:7835419-7853236:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNRD1--UBB	3	0	TXNRD1	11664	chr12:104682818:+	UBB	35705	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,UBB->chr17:16284112-16286059:+,ubiquitin_B	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF595--ZNF207	3	0	ZNF595	2931	chr4:60046:+	ZNF207	19807	chr17:30693684:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	HGNC_GENEFAM,ZNF595->chr4:53179-88099:+,zinc_finger_protein_595,ZNF207->chr17:30677136-30708905:+,zinc_finger_protein_207	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC002116.7--GABPA	2	0	AC002116.7	3379	chr19:36510286:+	GABPA	9653	chr21:27113884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	AC002116.7->chr19:36505410-36536874:+,GABPA->GA_binding_protein_transcription_factor_alpha_subunit,chr21:27106881-27144771:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSTF3--CSNK1D	2	0	CSTF3	5593	chr11:33163213:-	CSNK1D	34991	chr17:80211120:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	CSTF3->chr11:33098734-33183917:-,cleavage_stimulation_factor_subunit_3,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DKC1--DTYMK	2	0	DKC1	2294	chrX:153993241:+	DTYMK	22331	chr2:242618064:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	DKC1->Oncogene{Bushman},chrX:153991031-154005964:+,dyskerin_pseudouridine_synthase_1,DTYMK->chr2:242615157-242626406:-,deoxythymidylate_kinase	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EVL--NUCKS1	2	0	EVL	9362	chr14:100563995:+	NUCKS1	34339	chr1:205698749:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+,NUCKS1->chr1:205681947-205719404:-,nuclear_casein_kinase_and_cyclin-dependent_kinase_substrate_1	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM207A--ADARB1	2	0	FAM207A	1177	chr21:46360101:+	ADARB1	26089	chr21:46591525:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	NEIGHBORS[96864],FAM207A->chr21:46359925-46396904:+,family_with_sequence_similarity_207_member_A,ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	FALSE	0	0	0	1	0	FALSE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IRF2--PTP4A2	2	0	IRF2	1202	chr4:185395533:-	PTP4A2	24873	chr1:32385259:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	IRF2->ArcherDX_panel,FoundationOne_panel,chr4:185308867-185395734:-,interferon_regulatory_factor_2,PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLF12--ARHGEF7	2	0	KLF12	1286	chr13:74708109:-	ARHGEF7	35147	chr13:111885552:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	KLF12->Kruppel-like_factor_12,chr13:74260226-74708394:-,ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ME2--UBE2Z	2	0	ME2	1260	chr18:48405678:+	UBE2Z	25408	chr17:46993438:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	ME2->chr18:48405419-48474691:+,malic_enzyme_2,UBE2Z->chr17:46985731-47006418:+,ubiquitin_conjugating_enzyme_E2_Z	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NAA15--SCOC	2	0	NAA15	16151	chr4:140283091:+	SCOC	41081	chr4:141300275:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	NAA15->N(alpha)-acetyltransferase_15,_NatA_auxiliary_subunit,chr4:140222609-140341187:+,SCOC->chr4:141178440-141306880:+,short_coiled-coil_protein	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFB6--MTAP	2	0	NDUFB6	1282	chr9:32572879:-	MTAP	13696	chr9:21816713:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	NDUFB6->NADH:ubiquinone_oxidoreductase_subunit_B6,chr9:32552997-32573160:-,MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NINL--TNFRSF14	2	0	NINL	2254	chr20:25507044:-	TNFRSF14	32989	chr1:2488024:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	NINL->chr20:25433341-25566153:-,ninein_like,TNFRSF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:2487078-2496821:+,tumor_necrosis_factor_receptor_superfamily_member_14	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPTLC1--FGFR1OP2	2	0	SPTLC1	3666	chr9:94871022:-	FGFR1OP2	24480	chr12:27109476:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	SPTLC1->chr9:94794281-94877666:-,serine_palmitoyltransferase_long_chain_base_subunit_1,FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRSF5--HMGB2	2	0	SRSF5	5075	chr14:70235613:+	HMGB2	13315	chr4:174254146:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX8--SET	2	0	STX8	14031	chr17:9281869:-	SET	24742	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	STX8->chr17:9153788-9479908:-,syntaxin_8,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM120B--BCL7A	2	0	TMEM120B	5611	chr12:122190129:+	BCL7A	30394	chr12:122496998:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B,BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBR3--KIAA1715	2	0	UBR3	40669	chr2:170917953:+	KIAA1715	59293	chr2:176812420:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	UBR3->chr2:170683968-170940641:+,ubiquitin_protein_ligase_E3_component_n-recognin_3_(putative),KIAA1715->KIAA1715,chr2:176788620-176867567:-	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VDAC3--AC147651.4	2	0	VDAC3	10241	chr8:42260979:+	AC147651.4	16386	chr7:647502:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	VDAC3->chr8:42249142-42263415:+,voltage_dependent_anion_channel_3,AC147651.4->chr7:642822-648119:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YTHDC1--WTAP	2	0	YTHDC1	7077	chr4:69197821:-	WTAP	33397	chr6:160174492:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	YTHDC1->YTH_domain_containing_1,chr4:69176105-69215807:-,WTAP->Wilms_tumor_1_associated_protein,chr6:160146617-160177351:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZC3H13--LCP1	2	0	ZC3H13	1356	chr13:46626539:-	LCP1	39147	chr13:46733821:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	LOCAL_REARRANGEMENT:-:[73161],ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13,LCP1->Oncogene{Bushman},chr13:46700055-46786006:-,lymphocyte_cytosolic_protein_1	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	0	0	2	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF7--GNAS	2	0	ZNF7	9341	chr8:146062892:+	GNAS	35468	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0282	TRUE	0	1	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATF7IP--GNAS	1	1	ATF7IP	1152	chr12:14518761:+	GNAS	49438	chr20:57470667:+	ONLY_REF_SPLICE	NO	7	209	0.22	0.01	0.0141	0.0141	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},ATF7IP->Oncogene{Bushman},activating_transcription_factor_7_interacting_protein,chr12:14518610-14651697:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.22	0.0282	FALSE	0	0	0	2	0	FALSE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATXN2L--SRCAP	1	1	ATXN2L	4952	chr16:28838307:+	SRCAP	20346	chr16:30715385:+	ONLY_REF_SPLICE	YES	102	18	0.02	0.1	0.0141	0.0141	ATXN2L->ataxin_2_like,chr16:28834356-28848558:+,SRCAP->Snf2-related_CREBBP_activator_protein,chr16:30709530-30755602:+	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.1	0.0282	TRUE	0	0	0	1	0	FALSE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP36--RFX2	1	1	USP36	13970	chr17:76814749:-	RFX2	54323	chr19:6016282:-	ONLY_REF_SPLICE	NO	6	7	0.25	0.22	0.0141	0.0141	USP36->chr17:76783463-76837523:-,ubiquitin_specific_peptidase_36,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.25	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000197
TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--CHMP1A	1	1	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	19	41	0.1	0.05	0.0141	0.0141	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	TALL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.1	0.0282	TRUE	1	20	1	28	3	FALSE	ACH-000197
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	128	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1023	0.1378	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2401	TRUE	508	994	45	981	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	75	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	199	1	0.28	0.99	0.6459	0.0258	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.99	0.6717	TRUE	519	3926	326	965	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	72	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.62	0.0431	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.6631	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--IGKJ4	60	1	IGKV4-1	1755	chr2:89185667:+	IGKJ4	4758	chr2:89160434:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5167	0.0086	GTEx_FI:{Blood=[count:42=pct:24.1],Lung=[count:40=pct:24.0],Esophagus=[count:32=pct:7.9],Whole_Blood=[count:29=pct:22.0],Blood_Vessel=[count:21=pct:5.7],Stomach=[count:20=pct:22.5],Adipose_Tissue=[count:19=pct:6.4],Thyroid=[count:16=pct:9.0],Liver=[count:16=pct:13.2],Breast=[count:13=pct:11.7],Colon=[count:6=pct:3.1],Salivary_Gland=[count:5=pct:12.8],Spleen=[count:5=pct:4.5],Ovary=[count:5=pct:9.4],Vagina=[count:4=pct:7.3],Nerve=[count:4=pct:2.4],Adrenal_Gland=[count:3=pct:3.5],Bladder=[count:3=pct:33.3],Prostate=[count:3=pct:4.9],Muscle=[count:3=pct:1.3],Uterus=[count:3=pct:7.0],Small_Intestine=[count:2=pct:3.6],Testis=[count:2=pct:1.9],Fallopian_Tube=[count:2=pct:33.3],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2]},HGNC_GENEFAM,LOCAL_INVERSION:+:-:[24479],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5253	FALSE	195	1264	107	1	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	49	15	IGKV2-30	1665	chr2:89544415:-	AC096579.7	9026	chr2:89130914:-	INCL_NON_REF_SPLICE	YES	16	0	0.8	1	0.422	0.1292	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.5512	TRUE	0	0	0	4	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	9	168	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	12	0	0.94	1	0.0775	1.4467	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	1.5242	FALSE	344	826	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	50	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4306	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4306	TRUE	0	0	0	518	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	165	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	13	0	0.93	1	0.0689	1.4209	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	1.4898	FALSE	344	826	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	170	MT-ND4	1222	chrM:10981:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	11	0	0.94	1	0.0517	1.4639	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	1.5156	FALSE	344	827	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	169	MT-ND4	1362	chrM:11121:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	59	0	0.75	1	0.0517	1.4553	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	1.507	FALSE	344	827	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	175	MT-ND4	1540	chrM:11299:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	334	0	0.35	1	0.0258	1.507	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	1	1.5328	FALSE	344	827	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	40	25	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	307	0	0.17	1	0.3445	0.2153	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.5598	FALSE	344	827	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	171	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	219	0	0.44	1	0.0258	1.4725	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	1.4983	FALSE	344	827	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	160	MT-ND4	1100	chrM:10859:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	YES	5	0	0.97	1	0.0258	1.3778	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	1.4036	FALSE	344	826	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	125	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.98	1	0.0689	1.0764	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	1.1453	FALSE	344	821	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	122	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	7	0	0.95	1	0.0689	1.0506	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	1.1195	FALSE	344	826	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	32	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2756	0.1292	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4048	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR7--CCBE1	33	10	WDR7	3741	chr18:54346669:+	CCBE1	45892	chr18:57147470:-	ONLY_REF_SPLICE	YES	3	0	0.93	1	0.2842	0.0861	{Klijn_CCL:Lymphoid=1},WDR7->WD_repeat_domain_7,chr18:54318574-54698828:+,CCBE1->chr18:57098172-57364612:-,collagen_and_calcium_binding_EGF_domains_1	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.3703	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	114	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	31	0	0.79	1	0.0431	0.9817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	1.0248	FALSE	344	827	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	121	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	25	0	0.83	1	0.0258	1.042	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	1.0678	FALSE	344	827	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	30	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.2583	0.0431	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.3014	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARID2--TMEM117	29	7	ARID2	2571	chr12:46125097:+	TMEM117	41351	chr12:44693363:+	ONLY_REF_SPLICE	YES	8	4	0.82	0.9	0.2497	0.0603	{Klijn_CCL:Lymphoid=1},ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.9	0.31	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTNNB1--FARS2	27	9	CTNNB1	9853	chr3:41268843:+	FARS2	25670	chr6:5368783:+	ONLY_REF_SPLICE	YES	132	12	0.21	0.75	0.2325	0.0775	CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.75	0.31	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	96	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	10	0	0.91	1	0.0431	0.8267	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.8698	FALSE	344	826	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	26	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2239	0.0517	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2756	FALSE	462	80	0	856	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--AC096579.13	19	19	IGKV4-1	1757	chr2:89185669:+	AC096579.13	4762	chr2:89161071:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1636	0.1636	GTEx_FI:{Lung=[count:66=pct:39.5],Blood=[count:50=pct:28.7],Whole_Blood=[count:39=pct:29.5],Spleen=[count:38=pct:33.9],Esophagus=[count:32=pct:7.9],Blood_Vessel=[count:26=pct:7.0],Stomach=[count:24=pct:27.0],Adipose_Tissue=[count:21=pct:7.0],Thyroid=[count:20=pct:11.3],Breast=[count:20=pct:18.0],Liver=[count:19=pct:15.7],Small_Intestine=[count:19=pct:34.5],Colon=[count:16=pct:8.4],Nerve=[count:8=pct:4.7],Salivary_Gland=[count:8=pct:20.5],Vagina=[count:6=pct:10.9],Pancreas=[count:6=pct:3.3],Heart=[count:5=pct:2.0],Ovary=[count:5=pct:9.4],Uterus=[count:4=pct:9.3],Prostate=[count:4=pct:6.6],Kidney=[count:3=pct:21.4],Cervix_Uteri=[count:2=pct:25.0],Skin=[count:2=pct:0.6],Testis=[count:2=pct:1.9],Adrenal_Gland=[count:2=pct:2.4],Brain=[count:1=pct:0.2],Muscle=[count:1=pct:0.4],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},LOCAL_INVERSION:+:-:[23838],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,AC096579.13->chr2:89109984-89161075:-	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3272	TRUE	254	1311	97	3	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	59	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.0344	0.5081	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.5425	FALSE	344	821	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	12	20	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.1033	0.1722	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.2755	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSBP2--DIP2C	13	3	SSBP2	1817	chr5:81046800:-	DIP2C	36410	chr10:532470:-	ONLY_REF_SPLICE	YES	9	0	0.64	1	0.1119	0.0258	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.1377	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	26	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0603	0.2239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2842	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	13	1	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	4	2	0.78	0.88	0.1119	0.0086	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.88	0.1205	TRUE	0	1	0	84	1	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	24	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0603	0.2067	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.267	FALSE	344	821	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	18	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	13	0	0.67	1	0.0689	0.155	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.2239	FALSE	344	826	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	25	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	313	0	0.09	1	0.0517	0.2153	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.267	FALSE	344	827	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	12	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1033	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1033	TRUE	477	1352	189	275	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	11	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2284	0	0.01	1	0.0947	0.0172	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1119	FALSE	13	9	0	364	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	24	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	11	0	0.72	1	0.0431	0.2067	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	1	0.2498	FALSE	344	826	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	26	MT-ND6	1153	chrM:14521:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0.2239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2583	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0775	0.0517	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1292	FALSE	462	80	0	856	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	25	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	176	0	0.14	1	0.0344	0.2153	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.2497	FALSE	344	827	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	15	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.95	0.0517	0.1292	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.1809	FALSE	344	821	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	26	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.85	1	0.0258	0.2239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.2497	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	26	MT-ND6	1084	chrM:14590:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0258	0.2239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.2497	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	26	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0258	0.2239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.2497	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	26	MT-ND6	1109	chrM:14565:-	MT-TE	4550	chrM:14718:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0258	0.2239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.2497	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0775	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0775	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	23	MT-ND6	1159	chrM:14515:-	MT-TE	4559	chrM:14709:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0.1981	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2239	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	8	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0689	TRUE	0	0	0	434	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	19	MT-ND4	1049	chrM:10808:+	MT-ND4L	5620	chrM:10711:+	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0258	0.1636	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1894	FALSE	344	821	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TL2--MT-TS2	1	25	MT-TL2	1071	chrM:12336:+	MT-TS2	4072	chrM:12207:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0.2153	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1],MT-TL2->chrM:12266-12336:+,mitochondrially_encoded_tRNA_leucine_2_(CUN),MT-TS2->chrM:12207-12265:+,mitochondrially_encoded_tRNA_serine_2_(AGU/C)	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2239	FALSE	0	0	0	2	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC015987.2--MT-ND1	6	3	AC015987.2	2536	chr7:135613077:+	MT-ND1	5676	chrM:3309:+	INCL_NON_REF_SPLICE	YES	194	0	0.04	1	0.0517	0.0258	AC015987.2->chr7:135611542-135613214:+,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0775	FALSE	0	0	0	3	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	15	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0.1292	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.155	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	6	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0.0172	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0689	FALSE	416	2512	207	587	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	6	1	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	4	2	0.64	0.78	0.0517	0.0086	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.78	0.0603	TRUE	0	1	0	84	1	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC015987.2--MT-ND1	5	4	AC015987.2	2544	chr7:135613085:+	MT-ND1	5683	chrM:3316:+	INCL_NON_REF_SPLICE	YES	180	0	0.05	1	0.0431	0.0344	AC015987.2->chr7:135611542-135613214:+,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0775	FALSE	0	0	0	3	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCL3L1--IGL@	6	0	CCL3L1	1119	chr17:34625613:-	IGL@	8935	chr22:22516584:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	CCL3L1->C-C_motif_chemokine_ligand_3_like_1,chr17:34623842-34625731:-,IGL@->Oncogene{Bushman}	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0517	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0517	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	6	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0517	TRUE	0	0	0	518	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	11	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	22	0	0.39	1	0.0258	0.0947	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.1205	FALSE	344	827	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	6	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0.0517	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0775	FALSE	462	80	0	856	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0.0517	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0775	FALSE	462	80	0	856	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	4	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0258	0.0344	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.0602	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0344	FALSE	462	80	0	856	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0344	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0344	TRUE	0	0	0	434	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	3	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0258	0.0258	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0516	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	3	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2271	0	0	1	0.0258	0.0172	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.043	FALSE	13	9	0	364	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0.0172	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	FALSE	344	821	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.83	0.0258	0.0172	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.043	FALSE	344	821	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTNNB1--FARS2	3	1	CTNNB1	3896	chr3:41241161:+	FARS2	30233	chr6:5545413:+	ONLY_REF_SPLICE	YES	153	21	0.03	0.16	0.0258	0.0086	CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.16	0.0344	TRUE	0	0	0	1	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	FALSE	344	821	44	306	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	FALSE	499	1288	110	792	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	465	1949	224	605	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	3	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	FALSE	272	151	14	158	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.33	0.0172	0.0086	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.0258	TRUE	458	1351	185	561	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BOP1--PTMA	2	0	BOP1	4671	chr8:145500212:-	PTMA	18089	chr2:232576058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EDF1--BRD4	2	0	EDF1	2690	chr9:139757740:-	BRD4	18253	chr19:15367984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,BRD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},bromodomain_containing_4,chr19:15347647-15443356:-	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--RP5-882C2.2	2	0	NOC4L	5448	chr12:132633440:+	RP5-882C2.2	12147	chr17:42299830:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,RP5-882C2.2->chr17:42298769-42301078:+	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	2	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRD1--SSBP3	2	0	NRD1	29470	chr1:52260144:-	SSBP3	52470	chr1:54708972:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	NRD1->chr1:52254863-52344477:-,SSBP3->Oncogene{Bushman},chr1:54691105-54879152:-,single_stranded_DNA_binding_protein_3	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUPL2--DAP3	2	0	NUPL2	3987	chr7:23226765:+	DAP3	30023	chr1:155708400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	2	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCED1B-AS1--SEPT2	2	0	PCED1B-AS1	1292	chr12:47609948:-	SEPT2	24624	chr2:242287549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	PCED1B-AS1->PCED1B_antisense_RNA_1,chr12:47599681-47610239:-,SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM26--SLAIN1	2	0	RBM26	1774	chr13:79979839:-	SLAIN1	34507	chr13:78293667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	RBM26->RNA_binding_motif_protein_26,chr13:79885962-79980612:-,SLAIN1->SLAIN_motif_family_member_1,chr13:78272023-78338377:+	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--SEC22B	2	0	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	49	42	7	43	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTNNB1--FARS2	1	1	CTNNB1	9853	chr3:41268843:+	FARS2	28463	chr6:5431274:+	ONLY_REF_SPLICE	YES	132	23	0.01	0.08	0.0086	0.0086	CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.08	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR181A1HG--SRP9	1	1	MIR181A1HG	1204	chr1:198906355:-	SRP9	10357	chr1:225965637:+	ONLY_REF_SPLICE	YES	1	44	0.67	0.04	0.0086	0.0086	MIR181A1HG->MIR181A1_host_gene,chr1:198776622-198906558:-,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.67	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS12--RNF149	1	1	RPS12	2887	chr6:133137702:+	RNF149	18657	chr2:101888206:-	ONLY_REF_SPLICE	YES	3092	16	0	0.11	0.0086	0.0086	RPS12->chr6:133135580-133138703:+,ribosomal_protein_S12,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.11	0.0172	FALSE	0	0	0	3	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A5--EEF1D	1	1	SLC7A5	9399	chr16:87870104:-	EEF1D	33451	chr8:144663498:-	ONLY_REF_SPLICE	YES	341	1182	0.01	0	0.0086	0.0086	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBC1D16--MAD1L1	1	1	TBC1D16	3895	chr17:77983959:-	MAD1L1	60982	chr7:1938026:-	ONLY_REF_SPLICE	YES	2	112	0.5	0.02	0.0086	0.0086	GTEx_v2:{count=1;pct=0.01%;dist=Pituitary=1},TBC1D16->TBC1_domain_family_member_16,chr17:77906142-78009647:-,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.5	0.0172	TRUE	0	0	0	1	0	FALSE	ACH-000944
NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TULP4--RP11-732M18.3	1	1	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	3	1	0.4	0.67	0.0086	0.0086	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.67	0.0172	TRUE	126	140	6	21	0	FALSE	ACH-000944
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--IL27RA	394	135	CDC37	6181	chr19:10505697:-	IL27RA	15925	chr19:14153265:+	ONLY_REF_SPLICE	YES	969	19	0.35	0.97	4.5796	1.5692	{Klijn_CCL:Lymphoid=1},CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,IL27RA->chr19:14142560-14163743:+,interleukin_27_receptor_subunit_alpha	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.97	6.1488	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRPC4AP--ACSBG2	225	109	TRPC4AP	9141	chr20:33622926:-	ACSBG2	40906	chr19:6190595:+	ONLY_REF_SPLICE	YES	188	0	0.64	1	2.6153	1.267	{Klijn_CCL:Lymphoid=1},TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,ACSBG2->acyl-CoA_synthetase_bubblegum_family_member_2,chr19:6135258-6193112:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	3.8823	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRPC4AP--ACSBG2	182	65	TRPC4AP	9141	chr20:33622926:-	ACSBG2	42015	chr19:6192679:+	ONLY_REF_SPLICE	YES	188	7	0.57	0.97	2.1155	0.7555	{Klijn_CCL:Lymphoid=1},TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,ACSBG2->acyl-CoA_synthetase_bubblegum_family_member_2,chr19:6135258-6193112:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	0.97	2.871	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTF2--DR1	139	85	MTF2	9012	chr1:93586229:+	DR1	24972	chr1:93826050:+	ONLY_REF_SPLICE	YES	101	259	0.69	0.46	1.6157	0.988	MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2,DR1->chr1:93811445-93835055:+,down-regulator_of_transcription_1	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.69	2.6037	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITCH--CATSPERD	111	45	ITCH	3377	chr20:32981687:+	CATSPERD	36429	chr19:5727279:+	ONLY_REF_SPLICE	YES	85	0	0.65	1	1.2902	0.5231	ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,CATSPERD->cation_channel_sperm_associated_auxiliary_subunit_delta,chr19:5720688-5778745:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	1.8133	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FREM1--MPDZ	107	31	FREM1	12959	chr9:14841445:-	MPDZ	74828	chr9:13162794:-	ONLY_REF_SPLICE	YES	359	0	0.28	1	1.2437	0.3603	FREM1->FRAS1_related_extracellular_matrix_1,chr9:14734664-14910993:-,MPDZ->chr9:13105703-13279589:-,multiple_PDZ_domain_crumbs_cell_polarity_complex_component	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	1	1.604	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	106	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2321	0.3255	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.5576	TRUE	508	994	45	981	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	64	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	110	6	0.38	0.92	0.7439	0.0232	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.92	0.7671	TRUE	519	3926	326	965	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	59	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6858	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6858	TRUE	0	0	0	518	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DPH7--PTP4A3	54	0	DPH7	1297	chr9:140473091:-	PTP4A3	14726	chr8:142431487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6277	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:10=pct:2.7],Heart=[count:7=pct:2.8],Pituitary=[count:4=pct:7.7],Nerve=[count:2=pct:1.2],Esophagus=[count:2=pct:0.5],Colon=[count:2=pct:1.0],Lung=[count:2=pct:1.2],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Kidney=[count:1=pct:7.1],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},GTEx_v2:{count=46;pct=0.53%;dist=Artery_-_Tibial=9,Heart_-_Atrial_Appendage=9,Pituitary=6,Cells_-_EBV-transformed_lymphocytes=5,Artery_-_Aorta=3,Lung=2,Artery_-_Coronary=2,Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hypothalamus=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1,Testis=1},DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7,PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6277	TRUE	29	213	5	17	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	32	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.372	0.0581	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4301	FALSE	462	80	0	856	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTI1--TRPC4AP	31	8	TTI1	11775	chr20:36624777:-	TRPC4AP	17667	chr20:33665977:-	ONLY_REF_SPLICE	YES	35	263	0.53	0.13	0.3603	0.093	TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-,TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.53	0.4533	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	20	18	AC104820.2	16783	chr2:182227645:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	21	503	0.64	0.07	0.2325	0.2092	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.64	0.4417	FALSE	0	0	0	16	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTF2--DR1	3	85	MTF2	9234	chr1:93586451:+	DR1	24972	chr1:93826050:+	ONLY_REF_SPLICE	YES	104	259	0.46	0.25	0.0349	0.988	MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2,DR1->chr1:93811445-93835055:+,down-regulator_of_transcription_1	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.46	1.0229	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RALGAPB--AP1M2	22	9	RALGAPB	15862	chr20:37161502:+	AP1M2	44552	chr19:10694746:-	ONLY_REF_SPLICE	YES	44	1	0.41	0.97	0.2557	0.1046	RALGAPB->Ral_GTPase_activating_protein_non-catalytic_beta_subunit,chr20:37101459-37207504:+,AP1M2->adaptor_related_protein_complex_1_mu_2_subunit,chr19:10683347-10697991:-	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.97	0.3603	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTDC1--ZEB2	21	0	GTDC1	1130	chr2:145090006:-	ZEB2	54064	chr2:145187593:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2441	0	GTEx_FI:{Brain=[count:6=pct:0.9],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Brain_-_Frontal_Cortex_(BA9)=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_REARRANGEMENT:-:[51513],GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2441	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTF2--DR1	10	41	MTF2	7741	chr1:93584958:+	DR1	24972	chr1:93826050:+	ONLY_REF_SPLICE	YES	115	259	0.31	0.16	0.1162	0.4766	MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2,DR1->chr1:93811445-93835055:+,down-regulator_of_transcription_1	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.31	0.5928	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	20	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	13	1	0.62	0.2325	0.0116	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.2441	TRUE	458	1351	185	561	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	19	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.2208	0.0232	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.244	TRUE	0	42	0	133	42	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	19	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2208	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2208	TRUE	465	1949	224	605	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	14	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	98	15	0.2	0.62	0.1627	0.1279	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.62	0.2906	TRUE	267	562	48	632	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	14	3	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	21	592	0.45	0.03	0.1627	0.0349	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.45	0.1976	FALSE	0	0	0	19	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITCH--CATSPERD	2	49	ITCH	3377	chr20:32981687:+	CATSPERD	35374	chr19:5724819:+	ONLY_REF_SPLICE	YES	85	0	0.38	1	0.0232	0.5696	ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,CATSPERD->cation_channel_sperm_associated_auxiliary_subunit_delta,chr19:5720688-5778745:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.5928	TRUE	0	0	0	1	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	13	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2820	0	0.01	1	0.1511	0.0349	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.186	FALSE	13	9	0	364	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	11	8	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1279	0.093	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2209	TRUE	13	49	2	38	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1279	0.0814	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2093	FALSE	499	1288	110	792	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	11	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2856	0	0	1	0.1279	0.0349	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1628	FALSE	13	9	0	364	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	11	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1279	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1279	TRUE	46	1352	75	139	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	25	MT-CO3	1138	chrM:9344:+	MT-ATP6	5065	chrM:8807:+	INCL_NON_REF_SPLICE	YES	5	6	0.85	0.83	0.0465	0.2906	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.85	0.3371	FALSE	189	492	56	216	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	8	7	AC104820.2	6553	chr2:182091262:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	56	503	0.21	0.03	0.093	0.0814	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.21	0.1744	FALSE	0	0	0	11	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	27	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	NO	2	0	0.94	1	0.0349	0.3138	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.3487	FALSE	189	492	56	216	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	23	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	2	1	0.93	0.96	0.0349	0.2673	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.96	0.3022	FALSE	189	492	56	216	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	8	2	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	56	592	0.15	0.02	0.093	0.0232	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.15	0.1162	FALSE	0	1	0	18	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DACH1--OPCML	8	2	DACH1	3393	chr13:72255927:-	OPCML	24761	chr11:132527214:-	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.093	0.0232	DACH1->chr13:72012098-72441330:-,dachshund_family_transcription_factor_1,OPCML->Oncogene{Bushman},chr11:132284871-133402414:-,opioid_binding_protein/cell_adhesion_molecule-like	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.1162	TRUE	0	0	0	1	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.093	0.0232	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1162	FALSE	499	1288	110	792	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	8	1	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	103	0	0.08	1	0.093	0.0116	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.1046	TRUE	61	154	6	19	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0814	0.0465	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1279	FALSE	462	80	0	856	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	7	1	AC131097.3	2273	chr2:242824786:+	AC093642.5	12811	chr2:243056790:+	ONLY_REF_SPLICE	YES	8	14	0.5	0.36	0.0814	0.0116	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.5	0.093	FALSE	2	37	1	16	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RALGAPB--AP1M2	5	9	RALGAPB	15862	chr20:37161502:+	AP1M2	43578	chr19:10695720:-	ONLY_REF_SPLICE	YES	44	3	0.24	0.82	0.0581	0.1046	RALGAPB->Ral_GTPase_activating_protein_non-catalytic_beta_subunit,chr20:37101459-37207504:+,AP1M2->adaptor_related_protein_complex_1_mu_2_subunit,chr19:10683347-10697991:-	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.82	0.1627	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	93	15	0.12	0.46	0.0581	0.093	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.46	0.1511	TRUE	267	562	48	632	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0814	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0814	FALSE	189	492	56	216	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSPC1--DACH1	6	3	PSPC1	7403	chr13:20304379:-	DACH1	19883	chr13:72256042:-	ONLY_REF_SPLICE	YES	208	0	0.04	1	0.0697	0.0349	PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,DACH1->chr13:72012098-72441330:-,dachshund_family_transcription_factor_1	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.1046	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	5	5	MT-ND4	1843	chrM:11602:+	MT-RNR2	5933	chrM:2225:+	INCL_NON_REF_SPLICE	YES	7237	9509	0	0	0.0581	0.0581	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1162	FALSE	13	19	3	21	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	6	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0697	0.0116	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0813	FALSE	46	201	11	112	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	4	7	AC104820.2	6557	chr2:182091266:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	65	503	0.14	0.02	0.0465	0.0814	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.14	0.1279	FALSE	0	0	0	11	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.0581	0.0116	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	1	0.0697	FALSE	292	1546	117	613	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAP1B--AC068535.4	5	0	RAP1B	15072	chr12:69053773:+	AC068535.4	19991	chr2:105121504:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0581	0	RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+,AC068535.4->chr2:105104916-105126967:-	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0581	TRUE	0	0	0	4	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0581	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0581	TRUE	0	0	0	518	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0.0232	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0697	FALSE	499	1288	110	792	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	4	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	31	0	0.16	1	0.0465	0.0232	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.0697	FALSE	164	806	69	479	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	4	1	MT-ND4	1222	chrM:10981:+	MT-RNR2	5968	chrM:2260:+	INCL_NON_REF_SPLICE	YES	6613	9492	0	0	0.0465	0.0116	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0581	FALSE	13	19	3	21	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.83	0.83	0.0465	0.0116	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.83	0.0581	FALSE	515	4851	409	746	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COMMD7--RFX2	3	4	COMMD7	3772	chr20:31315700:-	RFX2	12286	chr19:6192040:-	ONLY_REF_SPLICE	YES	339	0	0.02	1	0.0349	0.0465	COMMD7->COMM_domain_containing_7,chr20:31290493-31331803:-,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0814	TRUE	0	0	0	1	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	4	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0465	TRUE	0	0	0	100	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR2--DHX34	4	0	GLTSCR2	1262	chr19:48249040:+	DHX34	29491	chr19:47885237:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0465	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:2=pct:3.8],Breast=[count:2=pct:1.8],Cervix_Uteri=[count:1=pct:12.5],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=4;pct=0.05%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hippocampus=1,Whole_Blood=1,Spleen=1},GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0465	TRUE	14	43	2	13	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0465	FALSE	189	492	56	216	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPM--PLAGL2	3	2	HNRNPM	12258	chr19:8539128:+	PLAGL2	23665	chr20:30790095:-	ONLY_REF_SPLICE	YES	387	28	0.01	0.15	0.0349	0.0232	HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,PLAGL2->Oncogene{Bushman},PLAG1_like_zinc_finger_2,chr20:30780306-30795594:-	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.15	0.0581	FALSE	0	0	0	1	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.19	1	0.0349	0.0232	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.0581	FALSE	125	705	46	456	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CASC4--EIF3J	3	1	CASC4	7176	chr15:44624276:+	EIF3J	25545	chr15:44829522:+	ONLY_REF_SPLICE	YES	30	144	0.12	0.03	0.0349	0.0116	CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+,EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.12	0.0465	TRUE	0	0	0	2	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	3	1	MT-ND4	1264	chrM:11023:+	MT-RNR2	5984	chrM:2276:+	INCL_NON_REF_SPLICE	YES	7199	9296	0	0	0.0349	0.0116	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0465	FALSE	13	19	3	21	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	3	1	MT-ND4	1261	chrM:11020:+	MT-RNR2	5926	chrM:2218:+	INCL_NON_REF_SPLICE	YES	7021	9711	0	0	0.0349	0.0116	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0465	FALSE	13	19	3	21	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-RNR2	3	1	MT-ND4	1499	chrM:11258:+	MT-RNR2	6470	chrM:2762:+	INCL_NON_REF_SPLICE	YES	8309	7955	0	0	0.0349	0.0116	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0465	FALSE	13	17	2	19	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	3	1	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	103	0	0.04	1	0.0349	0.0116	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0465	TRUE	30	67	4	15	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM165--SRD5A3-AS1	3	1	TMEM165	1440	chr4:56262563:+	SRD5A3-AS1	21895	chr4:56253704:-	ONLY_REF_SPLICE	YES	73	0	0.05	1	0.0349	0.0116	LOCAL_INVERSION:+:-:[110],TMEM165->chr4:56262124-56319564:+,transmembrane_protein_165,SRD5A3-AS1->SRD5A3_antisense_RNA_1,chr4:56230138-56262014:-	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0465	TRUE	0	0	0	1	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0349	FALSE	189	492	56	216	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	0	0.5	1	0.0232	0.0349	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0581	FALSE	16	356	14	466	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	2	2	AC104820.2	8902	chr2:182127704:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	64	592	0.06	0.01	0.0232	0.0232	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.0464	FALSE	0	0	0	11	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DACH1--OPCML	2	2	DACH1	3393	chr13:72255927:-	OPCML	23695	chr11:132687086:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0232	0.0232	DACH1->chr13:72012098-72441330:-,dachshund_family_transcription_factor_1,OPCML->Oncogene{Bushman},chr11:132284871-133402414:-,opioid_binding_protein/cell_adhesion_molecule-like	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRPC4AP--ACSBG2	1	6	TRPC4AP	6747	chr20:33637669:-	ACSBG2	42015	chr19:6192679:+	ONLY_REF_SPLICE	YES	430	7	0.02	0.5	0.0116	0.0697	{Klijn_CCL:Lymphoid=1},TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,ACSBG2->acyl-CoA_synthetase_bubblegum_family_member_2,chr19:6135258-6193112:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.5	0.0813	TRUE	0	0	0	2	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	2	1	AC131097.3	2273	chr2:242824786:+	AC093642.5	11670	chr2:243037038:+	ONLY_REF_SPLICE	YES	8	8	0.27	0.27	0.0232	0.0116	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.27	0.0348	FALSE	3	20	2	16	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SAMSN1--AF165138.7	2	1	SAMSN1	3406	chr21:15918526:-	AF165138.7	19058	chr21:16015454:-	ONLY_REF_SPLICE	YES	108	0	0.03	1	0.0232	0.0116	LOCAL_REARRANGEMENT:-:[8528],SAMSN1->SAM_domain,_SH3_domain_and_nuclear_localization_signals_1,chr21:15857549-15955723:-,AF165138.7->chr21:15964251-16031142:-	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0348	TRUE	0	0	0	1	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BANP--SLC7A5	2	0	BANP	3272	chr16:87985121:+	SLC7A5	39052	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	{Klijn_CCL:Skin=1},LOCAL_INVERSION:+:-:[79756],BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--FCGRT	2	0	C17orf76-AS1	1593	chr17:16342728:+	FCGRT	21378	chr19:50027764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	C17orf76-AS1->chr17:16342136-16381992:+,FCGRT->Fc_fragment_of_IgG_receptor_and_transporter,chr19:50010073-50029590:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	3	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CASC4--EIF3J	2	0	CASC4	6085	chr15:44620985:+	EIF3J	25545	chr15:44829522:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+,EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF3M--QSER1	2	0	EIF3M	1132	chr11:32605475:+	QSER1	26604	chr11:32975403:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M,QSER1->chr11:32914724-33014862:+,glutamine_and_serine_rich_1	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	METAP2--USP44	2	0	METAP2	1811	chr12:95868106:+	USP44	25225	chr12:95928102:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	LOCAL_INVERSION:+:-:[721],METAP2->Oncogene{Bushman},chr12:95867296-95909615:+,methionyl_aminopeptidase_2,USP44->chr12:95910336-95945266:-,ubiquitin_specific_peptidase_44	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYO3B--UBR3	2	0	MYO3B	10164	chr2:171225887:+	UBR3	82701	chr2:170885856:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	LOCAL_REARRANGEMENT:+:[94014],MYO3B->chr2:171034655-171511681:+,myosin_IIIB,UBR3->chr2:170683968-170940641:+,ubiquitin_protein_ligase_E3_component_n-recognin_3_(putative)	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	2	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PINX1--RP1L1	2	0	PINX1	6234	chr8:10683662:-	RP1L1	17312	chr8:10480730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	NEIGHBORS[52776],PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	FALSE	1	8	0	15	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R16B--RP5-1043L13.1	2	0	PPP1R16B	2439	chr20:37464818:+	RP5-1043L13.1	30631	chr20:58729463:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	PPP1R16B->Oncogene{Bushman},chr20:37434348-37551667:+,protein_phosphatase_1_regulatory_subunit_16B,RP5-1043L13.1->chr20:58662895-59102516:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBC1D23--CMSS1	2	0	TBC1D23	1072	chr3:99979915:+	CMSS1	37565	chr3:99865817:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	LOCAL_REARRANGEMENT:+:[82397],TBC1D23->TBC1_domain_family_member_23,chr3:99979844-100044095:+,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	1	1	AC131097.3	2273	chr2:242824786:+	AC093642.5	15104	chr2:243061116:+	ONLY_REF_SPLICE	YES	8	20	0.2	0.09	0.0116	0.0116	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.2	0.0232	FALSE	0	3	0	4	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KSR1--NDUFS6	1	1	KSR1	1231	chr17:25783900:+	NDUFS6	40990	chr5:1814453:+	ONLY_REF_SPLICE	NO	209	375	0.01	0.01	0.0116	0.0116	KSR1->Oncogene{Bushman},chr17:25783670-25953461:+,kinase_suppressor_of_ras_1,NDUFS6->NADH:ubiquinone_oxidoreductase_subunit_S6,chr5:1801514-1816719:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	1	1	NOC4L	5448	chr12:132633440:+	FBRSL1	21444	chr12:133124589:+	ONLY_REF_SPLICE	YES	99	72	0.02	0.03	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0232	TRUE	2	2	0	3	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	1	1	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	94	0	0.02	1	0.0116	0.0116	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0232	TRUE	30	67	4	15	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC24A3--DTD1	1	1	SLC24A3	2468	chr20:19261731:+	DTD1	31705	chr20:18744004:+	ONLY_REF_SPLICE	YES	17	134	0.11	0.01	0.0116	0.0116	SLC24A3->chr20:19193290-19703581:+,solute_carrier_family_24_member_3,DTD1->D-tyrosyl-tRNA_deacylase_1,chr20:18568537-18744561:+	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.11	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0116	0.0116	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0232	TRUE	62	24	1	171	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM165--SRD5A3-AS1	1	1	TMEM165	1440	chr4:56262563:+	SRD5A3-AS1	23009	chr4:56252590:-	ONLY_REF_SPLICE	NO	73	0	0.03	1	0.0116	0.0116	LOCAL_INVERSION:+:-:[110],TMEM165->chr4:56262124-56319564:+,transmembrane_protein_165,SRD5A3-AS1->SRD5A3_antisense_RNA_1,chr4:56230138-56262014:-	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000004
HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAC2--TM9SF2	1	1	UBAC2	11758	chr13:99970323:+	TM9SF2	39503	chr13:100211617:+	ONLY_REF_SPLICE	YES	105	200	0.02	0.01	0.0116	0.0116	UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,TM9SF2->chr13:100153671-100216260:+,transmembrane_9_superfamily_member_2	HEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000004
SNU1214_UPPER_AERODIGESTIVE_TRACT	LMAN1--RP11-214L13.1	191	196	LMAN1	10187	chr18:57013151:-	RP11-214L13.1	22041	chr18:53565658:-	ONLY_REF_SPLICE	YES	147	0	0.72	1	1.7873	1.8341	LMAN1->chr18:56995055-57027194:-,lectin,_mannose_binding_1,RP11-214L13.1->chr18:53548919-53587430:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.72	1	3.6214	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	LMAN1--RP11-214L13.1	112	120	LMAN1	9054	chr18:57014745:-	RP11-214L13.1	22041	chr18:53565658:-	ONLY_REF_SPLICE	YES	189	0	0.55	1	1.0481	1.1229	LMAN1->chr18:56995055-57027194:-,lectin,_mannose_binding_1,RP11-214L13.1->chr18:53548919-53587430:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.55	1	2.171	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	LMAN1--RP11-214L13.1	46	167	LMAN1	10187	chr18:57013151:-	RP11-214L13.1	22060	chr18:53565639:-	INCL_NON_REF_SPLICE	YES	147	0	0.59	1	0.4305	1.5627	LMAN1->chr18:56995055-57027194:-,lectin,_mannose_binding_1,RP11-214L13.1->chr18:53548919-53587430:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.59	1	1.9932	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CCAT1--CASC8	69	61	CCAT1	1279	chr8:128231055:-	CASC8	12971	chr8:128433208:-	ONLY_REF_SPLICE	YES	73	6	0.64	0.96	0.6457	0.5708	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.64	0.96	1.2165	TRUE	0	7	0	7	7	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	LMAN1--RP11-214L13.1	28	101	LMAN1	9054	chr18:57014745:-	RP11-214L13.1	22060	chr18:53565639:-	INCL_NON_REF_SPLICE	YES	189	0	0.41	1	0.262	0.9451	LMAN1->chr18:56995055-57027194:-,lectin,_mannose_binding_1,RP11-214L13.1->chr18:53548919-53587430:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.41	1	1.2071	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	49	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4585	0.0655	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.524	FALSE	462	80	0	856	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	40	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3743	0.1217	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.496	TRUE	508	994	45	981	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CLSTN1--MMEL1	37	10	CLSTN1	3007	chr1:9833330:-	MMEL1	33014	chr1:2530229:-	ONLY_REF_SPLICE	YES	85	0	0.36	1	0.3462	0.0936	CLSTN1->calsyntenin_1,chr1:9789084-9884584:-,MMEL1->chr1:2522078-2564481:-,membrane_metallo-endopeptidase-like_1	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.36	1	0.4398	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	TGFBR2--GRM7-AS2	34	9	TGFBR2	7853	chr3:30715738:+	GRM7-AS2	15708	chr3:6935706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3182	0.0842	TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,GRM7-AS2->GRM7_antisense_RNA_2,chr3:6934319-6935709:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.4024	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	ZNF654--HMGB2	35	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3275	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.3275	TRUE	0	0	0	518	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MIR205HG--C9orf3	25	11	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	1806	1588	0.02	0.02	0.2339	0.1029	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.02	0.02	0.3368	TRUE	86	303	14	25	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-444D3.1--SOX5	25	8	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2339	0.0749	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.3088	TRUE	477	1352	189	275	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	22	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	42	57	0.46	0.39	0.2059	0.131	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.39	0.46	0.3369	TRUE	267	562	48	632	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-108K3.1--GLDN	21	17	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.1965	0.1591	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.97	1	0.3556	FALSE	0	19	0	46	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-603B24.1--HERC2P3	24	5	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2246	0.0468	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.2714	TRUE	27	10	1	20	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MT-CO1--KRT6A	21	3	MT-CO1	1575	chrM:6478:+	KRT6A	5543	chr12:52887041:-	INCL_NON_REF_SPLICE	YES	18394	0	0	1	0.1965	0.0281	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	SNU1214_UPPER_AERODIGESTIVE_TRACT	0	1	0.2246	FALSE	7	19	2	8	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	19	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1778	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.1778	TRUE	519	3926	326	965	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	17	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	33	1	0.4	0.1591	0.0468	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.2059	TRUE	465	1949	224	605	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CCAT1--CASC8	6	48	CCAT1	1274	chr8:128231060:-	CASC8	12971	chr8:128433208:-	INCL_NON_REF_SPLICE	YES	66	6	0.45	0.9	0.0561	0.4492	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.45	0.9	0.5053	TRUE	0	7	0	7	7	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CCAT1--CASC8	1	62	CCAT1	1279	chr8:128231055:-	CASC8	11189	chr8:128455965:-	ONLY_REF_SPLICE	YES	73	5	0.46	0.93	0.0094	0.5802	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.46	0.93	0.5896	TRUE	0	0	0	2	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	LMAN1--RP11-214L13.1	10	24	LMAN1	5172	chr18:57020434:-	RP11-214L13.1	22041	chr18:53565658:-	ONLY_REF_SPLICE	YES	250	0	0.12	1	0.0936	0.2246	LMAN1->chr18:56995055-57027194:-,lectin,_mannose_binding_1,RP11-214L13.1->chr18:53548919-53587430:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.12	1	0.3182	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	14	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.131	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.131	TRUE	0	0	0	434	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	IGFBP7--KRT17	13	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1217	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.1217	TRUE	0	0	0	9	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	12	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1123	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.1123	FALSE	499	1288	110	792	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	AP000525.9--LA16c-60G3.6	11	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	10	0	0.57	1	0.1029	0.0187	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.57	1	0.1216	TRUE	0	42	0	133	42	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	11	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1029	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.1029	FALSE	499	1288	110	792	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	10	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0936	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0936	FALSE	462	80	0	856	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	9	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0842	0.0374	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.1216	FALSE	416	2512	207	587	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	LMAN1--RP11-214L13.1	5	19	LMAN1	5172	chr18:57020434:-	RP11-214L13.1	22060	chr18:53565639:-	INCL_NON_REF_SPLICE	YES	250	0	0.09	1	0.0468	0.1778	LMAN1->chr18:56995055-57027194:-,lectin,_mannose_binding_1,RP11-214L13.1->chr18:53548919-53587430:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MT-CO1--KRT6A	9	3	MT-CO1	1591	chrM:6494:+	KRT6A	5561	chr12:52887023:-	INCL_NON_REF_SPLICE	YES	17799	0	0	1	0.0842	0.0281	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	SNU1214_UPPER_AERODIGESTIVE_TRACT	0	1	0.1123	FALSE	7	19	2	8	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	PJA2--OTP	8	7	PJA2	8567	chr5:108704262:-	OTP	21317	chr5:76933055:-	ONLY_REF_SPLICE	YES	56	0	0.21	1	0.0749	0.0655	PJA2->chr5:108670410-108745695:-,praja_ring_finger_ubiquitin_ligase_2,OTP->chr5:76924538-76935513:-,orthopedia_homeobox	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.21	1	0.1404	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CLSTN1--MMEL1	8	6	CLSTN1	3007	chr1:9833330:-	MMEL1	33068	chr1:2530175:-	INCL_NON_REF_SPLICE	YES	85	0	0.14	1	0.0749	0.0561	CLSTN1->calsyntenin_1,chr1:9789084-9884584:-,MMEL1->chr1:2522078-2564481:-,membrane_metallo-endopeptidase-like_1	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.14	1	0.131	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CTD-2337A12.1--CAST	9	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	38	1	0.22	0.0842	0.0187	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.22	1	0.1029	TRUE	347	1186	183	220	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MAF--RP11-679B19.2	7	8	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0655	0.0749	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.1404	TRUE	48	25	3	38	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-108K3.1--GLDN	6	12	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	1	1	0.95	0.95	0.0561	0.1123	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.95	0.95	0.1684	FALSE	0	14	0	30	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	8	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0749	0.0187	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0936	FALSE	499	1288	110	792	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	6	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	40	60	0.27	0.2	0.0561	0.0842	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.2	0.27	0.1403	TRUE	267	562	48	632	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CCAT1--CASC8	4	16	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	73	16	0.22	0.56	0.0374	0.1497	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.22	0.56	0.1871	TRUE	0	7	0	14	6	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	6	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	11	1	0.52	0.0561	0.0561	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.52	1	0.1122	TRUE	458	1351	185	561	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	NCKAP5--AP2A1	7	1	NCKAP5	1248	chr2:134325787:-	AP2A1	37457	chr19:50295192:+	ONLY_REF_SPLICE	YES	1	200	0.89	0.04	0.0655	0.0094	NCKAP5->NCK_associated_protein_5,chr2:133429374-134326034:-,AP2A1->adaptor_related_protein_complex_2_alpha_1_subunit,chr19:50270225-50310370:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.04	0.89	0.0749	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	7	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	30	1747	0.21	0	0.0655	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0	0.21	0.0749	FALSE	0	0	0	434	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	VTI1A--RP11-57H14.3	7	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0655	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0655	FALSE	272	151	14	158	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-494M8.4--OVCH2	5	7	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.0468	0.0655	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.86	1	0.1123	FALSE	32	0	0	22	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0.0936	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.131	FALSE	462	80	0	856	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-319G9.5--WWOX	6	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0561	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0561	FALSE	154	425	28	76	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CCAT1--CASC8	3	10	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	73	26	0.15	0.33	0.0281	0.0936	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.15	0.33	0.1217	TRUE	0	26	0	18	24	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0.0561	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0935	FALSE	462	80	0	856	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-108K3.1--GLDN	2	14	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	NO	1	1	0.94	0.94	0.0187	0.131	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.94	0.94	0.1497	FALSE	0	14	0	30	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	5	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	30	1754	0.17	0	0.0468	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0	0.17	0.0562	FALSE	0	0	0	434	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	5	1	NPM1P24	1533	chr10:74677760:-	SET	12307	chr9:131456202:+	INCL_NON_REF_SPLICE	NO	30	1774	0.17	0	0.0468	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0	0.17	0.0562	FALSE	0	0	0	434	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--MID1	5	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	41	0.55	0.13	0.0468	0.0094	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.13	0.55	0.0562	FALSE	16	356	14	466	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	PTPN9--SNUPN	4	4	PTPN9	4898	chr15:75815462:-	SNUPN	22312	chr15:75918712:-	INCL_NON_REF_SPLICE	YES	89	0	0.08	1	0.0374	0.0374	LOCAL_REARRANGEMENT:-:[18794],PTPN9->chr15:75759462-75871630:-,protein_tyrosine_phosphatase,_non-receptor_type_9,SNUPN->chr15:75890424-75918810:-,snurportin_1	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.08	1	0.0748	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RFC4--SOX2-OT	5	0	RFC4	3476	chr3:186522372:-	SOX2-OT	23403	chr3:181281508:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0468	0	RFC4->chr3:186507669-186524847:-,replication_factor_C_subunit_4,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-255B23.4--CASC8	5	0	RP11-255B23.4	1060	chr8:128215408:-	CASC8	12367	chr8:128433208:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0468	0	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0468	TRUE	0	2	0	2	2	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0374	0.0281	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0655	FALSE	499	1288	110	792	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	3	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0281	0.0655	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.91	1	0.0936	FALSE	515	4851	409	746	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	PJA2--WDR41	4	2	PJA2	8567	chr5:108704262:-	WDR41	27292	chr5:76760634:-	ONLY_REF_SPLICE	YES	56	229	0.1	0.03	0.0374	0.0187	PJA2->chr5:108670410-108745695:-,praja_ring_finger_ubiquitin_ligase_2,WDR41->WD_repeat_domain_41,chr5:76721795-76916436:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.03	0.1	0.0561	TRUE	0	0	0	1	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	30	1772	0.14	0	0.0374	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0	0.14	0.0468	FALSE	0	0	0	434	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MT-CO1--KRT6A	3	4	MT-CO1	1624	chrM:6527:+	KRT6A	5587	chr12:52886997:-	INCL_NON_REF_SPLICE	NO	18798	0	0	1	0.0281	0.0374	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	SNU1214_UPPER_AERODIGESTIVE_TRACT	0	1	0.0655	FALSE	7	19	2	8	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	4	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0.0374	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0655	FALSE	499	1288	110	792	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MT-CO1--KRT6A	3	3	MT-CO1	1597	chrM:6500:+	KRT6A	5569	chr12:52887015:-	INCL_NON_REF_SPLICE	YES	17614	0	0	1	0.0281	0.0281	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	SNU1214_UPPER_AERODIGESTIVE_TRACT	0	1	0.0562	FALSE	7	19	2	8	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	SAMD5--SASH1	3	3	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	9	29	0.4	0.17	0.0281	0.0281	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.17	0.4	0.0562	TRUE	53	396	64	110	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-108K3.1--GLDN	2	6	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	1	1	0.89	0.89	0.0187	0.0561	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.89	0.89	0.0748	FALSE	1	20	0	46	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	3	1	NPM1P24	1535	chr10:74677758:-	SET	12312	chr9:131456207:+	INCL_NON_REF_SPLICE	NO	30	1660	0.12	0	0.0281	0.0094	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0	0.12	0.0375	FALSE	0	0	0	434	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--MID1	3	1	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	7	41	0.36	0.09	0.0281	0.0094	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.09	0.36	0.0375	FALSE	0	9	0	55	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-444D3.1--SOX5	2	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0.0468	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0655	TRUE	274	363	69	150	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	EXT1--SAMD12	3	0	EXT1	2769	chr8:119122324:-	SAMD12	31808	chr8:119209971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:-:[77606],EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0281	TRUE	0	6	0	5	5	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	HMGB1--NPM1P40	3	0	HMGB1	8082	chr13:31035497:-	NPM1P40	14159	chr1:203225334:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0	HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1,NPM1P40->chr1:203224871-203225603:+,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_40	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	IGFBP7--KRT17	3	0	IGFBP7	1147	chr4:57976405:-	KRT17	10592	chr17:39780778:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0281	TRUE	0	0	0	9	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0281	FALSE	499	1288	110	792	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0281	TRUE	0	0	0	434	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-108K3.1--GLDN	2	4	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0187	0.0374	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.86	0.86	0.0561	FALSE	1	20	0	46	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-353N4.6--SEC22B	3	0	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0281	TRUE	49	42	7	43	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0094	0.0749	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.9	1	0.0843	FALSE	275	511	55	178	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	SOX2-OT--APBA1	3	0	SOX2-OT	13119	chr3:181328717:+	APBA1	39763	chr9:72132195:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+,APBA1->amyloid_beta_precursor_protein_binding_family_A_member_1,chr9:72042446-72287222:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MIR205HG--C9orf3	1	7	MIR205HG	2681	chr1:209603845:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	NO	2206	1588	0	0.01	0.0094	0.0655	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SNU1214_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0749	FALSE	7	55	2	6	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-108K3.1--GLDN	1	7	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0094	0.0655	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.89	1	0.0749	FALSE	0	30	1	55	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.89	1	0.0094	0.0655	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.89	1	0.0749	FALSE	407	2205	196	549	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CDH13--RP11-22H5.2	2	2	CDH13	7013	chr16:82753080:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	170	0	0.02	1	0.0187	0.0187	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.02	1	0.0374	FALSE	1	1	0	8	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MIR205HG--C9orf3	1	6	MIR205HG	2657	chr1:209603821:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	NO	2098	1588	0	0	0.0094	0.0561	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SNU1214_UPPER_AERODIGESTIVE_TRACT	0	0	0.0655	FALSE	7	55	2	6	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	IMMP2L--IMMP2L-IT1	2	1	IMMP2L	12890	chr7:110526649:-	IMMP2L-IT1	19872	chr7:110364647:-	ONLY_REF_SPLICE	YES	39	0	0.07	1	0.0187	0.0094	NEIGHBORS_OVERLAP:-:-:[1666],IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,IMMP2L-IT1->chr7:110364215-110365881:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.0281	FALSE	0	0	0	2	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MAP3K2--IWS1	2	1	MAP3K2	14289	chr2:128075205:-	IWS1	34369	chr2:128263328:-	ONLY_REF_SPLICE	YES	75	56	0.04	0.05	0.0187	0.0094	LOCAL_REARRANGEMENT:-:[47742],MAP3K2->chr2:128056306-128146041:-,mitogen-activated_protein_kinase_kinase_kinase_2,IWS1->IWS1,_SUPT6H_interacting_protein,chr2:128193783-128284462:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.04	0.05	0.0281	TRUE	0	0	0	1	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-108K3.1--GLDN	2	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	13663	chr15:51687032:+	ONLY_REF_SPLICE	YES	1	9	0.75	0.25	0.0187	0.0094	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.25	0.75	0.0281	FALSE	0	0	0	2	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	SAMD12--EXT1	2	1	SAMD12	4644	chr8:119391799:-	EXT1	23526	chr8:118849440:-	ONLY_REF_SPLICE	YES	51	520	0.06	0.01	0.0187	0.0094	NEIGHBORS[77606],SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.01	0.06	0.0281	FALSE	0	6	0	3	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	C7orf50--SUN1	2	0	C7orf50	6340	chr7:1067894:-	SUN1	41103	chr7:908986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	DHRS9--PHF14	2	0	DHRS9	4426	chr2:169926227:+	PHF14	41363	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	DHRS9->chr2:169921299-169952677:+,dehydrogenase/reductase_(SDR_family)_member_9,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	DYNC1H1--LINC00969	2	0	DYNC1H1	34093	chr14:102489217:+	LINC00969	76523	chr3:195415404:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	DYNC1H1->chr14:102430865-102517129:+,dynein_cytoplasmic_1_heavy_chain_1,LINC00969->chr3:195384933-195460422:+,long_intergenic_non-protein_coding_RNA_969	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MIR205HG--C9orf3	1	4	MIR205HG	1589	chr1:209602753:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	2477	1588	0	0	0.0094	0.0374	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SNU1214_UPPER_AERODIGESTIVE_TRACT	0	0	0.0468	FALSE	9	19	1	3	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	NCOR2--UBC	2	0	NCOR2	2329	chr12:125020111:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	48	117	12	14	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	145	312	16	51	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	NF1--RNF135	2	0	NF1	1443	chr17:29422387:+	RNF135	81276	chr17:29311635:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},LOCAL_REARRANGEMENT:+:[95016],NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,RNF135->chr17:29295803-29326929:+,ring_finger_protein_135	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	ODC1--FLRT2	2	0	ODC1	1384	chr2:10588247:-	FLRT2	19447	chr14:86087483:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	ODC1->chr2:10580094-10588630:-,ornithine_decarboxylase_1,FLRT2->chr14:85996488-86095034:+,fibronectin_leucine_rich_transmembrane_protein_2	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	PCDHGA9--TUBGCP3	2	0	PCDHGA9	3424	chr5:140784943:+	TUBGCP3	25647	chr13:113181798:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	PCDHGA9->chr5:140782520-140892546:+,protocadherin_gamma_subfamily_A,_9,TUBGCP3->chr13:113139325-113242481:-,tubulin_gamma_complex_associated_protein_3	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-308D16.4--MYO6	2	0	RP11-308D16.4	1386	chrX:135991939:+	MYO6	47755	chr6:76618213:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	RP11-308D16.4->chrX:135991554-136103789:+,MYO6->chr6:76458909-76629254:+,myosin_VI	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	TOLLIP--MIR205HG	2	0	TOLLIP	11922	chr11:1307232:-	MIR205HG	20482	chr1:209602526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	TOLLIP->chr11:1295601-1330884:-,toll_interacting_protein,MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	USP33--LANCL2	2	0	USP33	1210	chr1:78225328:-	LANCL2	41332	chr7:55479600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33,LANCL2->LanC_like_2,chr7:55433141-55501435:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	XKR9--LACTB2	2	0	XKR9	1174	chr8:71581773:+	LACTB2	20001	chr8:71556478:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	LOCAL_INVERSION:+:-:[191],XKR9->XK_related_9,chr8:71581600-71702606:+,LACTB2->chr8:71547553-71581409:-,lactamase_beta_2	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0187	TRUE	0	11	0	8	7	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CTD-2337A12.1--CAST	1	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	43	1	0.07	0.0094	0.0187	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.0281	TRUE	15	36	8	26	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	PJA2--WDR41	1	2	PJA2	8567	chr5:108704262:-	WDR41	25067	chr5:76785397:-	ONLY_REF_SPLICE	YES	56	50	0.05	0.06	0.0094	0.0187	PJA2->chr5:108670410-108745695:-,praja_ring_finger_ubiquitin_ligase_2,WDR41->WD_repeat_domain_41,chr5:76721795-76916436:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.05	0.06	0.0281	TRUE	0	0	0	1	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RNF152--RP11-879F14.1	1	2	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	NO	3	0	0.5	1	0.0094	0.0187	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.5	1	0.0281	FALSE	275	472	65	43	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-255B23.4--CASC8	1	2	RP11-255B23.4	2391	chr8:128200030:-	CASC8	12367	chr8:128433208:-	ONLY_REF_SPLICE	YES	10	6	0.23	0.33	0.0094	0.0187	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.23	0.33	0.0281	TRUE	0	1	0	2	1	TRUE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-494M8.4--OVCH2	1	2	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0094	0.0187	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.5	1	0.0281	FALSE	60	13	8	23	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	80	1	0.04	0.0094	0.0187	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.04	1	0.0281	TRUE	64	13	3	59	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	AC011997.1--PLCL1	1	1	AC011997.1	3224	chr2:198636638:+	PLCL1	10736	chr2:198866676:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0094	0.0094	NEIGHBORS[29879],AC011997.1->chr2:198557830-198639547:+,PLCL1->Oncogene{Bushman},chr2:198669426-199437305:+,phospholipase_C_like_1	SNU1214_UPPER_AERODIGESTIVE_TRACT	1	1	0.0188	FALSE	0	5	0	3	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	CDH13--RP11-22H5.2	1	1	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	NO	138	0	0.01	1	0.0094	0.0094	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.0188	FALSE	14	31	0	36	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	EFCAB11--RP11-944C7.1	1	1	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	54	0	0.04	1	0.0094	0.0094	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.04	1	0.0188	TRUE	31	91	1	18	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	IMMP2L--IMMP2L-IT1	1	1	IMMP2L	10595	chr7:110603556:-	IMMP2L-IT1	19872	chr7:110364647:-	ONLY_REF_SPLICE	NO	42	0	0.05	1	0.0094	0.0094	NEIGHBORS_OVERLAP:-:-:[1666],IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,IMMP2L-IT1->chr7:110364215-110365881:-	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.05	1	0.0188	FALSE	0	0	0	2	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	MBD2--CSDE1	1	1	MBD2	10258	chr18:51686135:-	CSDE1	24883	chr1:115282346:-	ONLY_REF_SPLICE	NO	396	652	0.01	0	0.0094	0.0094	MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	SNU1214_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	NCOR2--UBC	1	1	NCOR2	30035	chr12:124846672:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	113	75	0.02	0.03	0.0094	0.0094	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.02	0.03	0.0188	TRUE	4	3	1	2	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	SAMD12--EXT1	1	1	SAMD12	2373	chr8:119592954:-	EXT1	23526	chr8:118849440:-	ONLY_REF_SPLICE	YES	100	520	0.02	0	0.0094	0.0094	NEIGHBORS[77606],SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1	SNU1214_UPPER_AERODIGESTIVE_TRACT	0	0.02	0.0188	FALSE	0	4	0	6	0	FALSE	ACH-000715
SNU1214_UPPER_AERODIGESTIVE_TRACT	TPST1--GS1-124K5.4	1	1	TPST1	5907	chr7:65751696:+	GS1-124K5.4	15884	chr7:65960242:+	ONLY_REF_SPLICE	NO	39	7	0.05	0.22	0.0094	0.0094	NEIGHBORS[73163],TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,GS1-124K5.4->chr7:65958693-65960461:+	SNU1214_UPPER_AERODIGESTIVE_TRACT	0.05	0.22	0.0188	FALSE	17	126	3	8	0	FALSE	ACH-000715
HT55_LARGE_INTESTINE	MAP7--MAP3K5	94	3	MAP7	1478	chr6:136871480:-	MAP3K5	26977	chr6:137041727:-	ONLY_REF_SPLICE	YES	30	47	0.76	0.67	1.1798	0.0377	LOCAL_REARRANGEMENT:-:[6228],MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7,MAP3K5->chr6:136878185-137113656:-,mitogen-activated_protein_kinase_kinase_kinase_5	HT55_LARGE_INTESTINE	0.67	0.76	1.2175	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	MT-TA--MT-TC	55	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6903	0.1255	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HT55_LARGE_INTESTINE	1	1	0.8158	FALSE	462	80	0	856	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	TIMM23B--LINC00843	38	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4769	0.1883	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HT55_LARGE_INTESTINE	1	1	0.6652	TRUE	508	994	45	981	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	ZNF654--HMGB2	41	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5146	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HT55_LARGE_INTESTINE	1	1	0.5146	TRUE	0	0	0	518	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	39	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	19762	7	0	0.85	0.4895	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	0.85	0.5021	FALSE	230	193	14	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	33	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19942	9	0	0.79	0.4142	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	0.79	0.4268	FALSE	230	198	14	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND5--MT-ND4	19	25	MT-ND5	2667	chrM:14003:+	MT-ND4	6019	chrM:10966:+	INCL_NON_REF_SPLICE	YES	1632	13215	0.03	0	0.2385	0.3138	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HT55_LARGE_INTESTINE	0	0.03	0.5523	FALSE	29	25	1	23	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	TIMM23--RP11-464F9.1	24	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	380	1	0.06	0.96	0.3012	0.0126	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HT55_LARGE_INTESTINE	0.06	0.96	0.3138	TRUE	519	3926	326	965	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	SLC1A5--MT-ND4L	21	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2498	0	0.01	1	0.2636	0.0126	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HT55_LARGE_INTESTINE	0.01	1	0.2762	FALSE	0	0	0	189	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND5--MT-ND4	17	0	MT-ND5	2509	chrM:13845:+	MT-ND4	7031	chrM:11978:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2134	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HT55_LARGE_INTESTINE	1	1	0.2134	FALSE	45	28	1	23	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-TA--MT-TC	12	11	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1506	0.1381	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HT55_LARGE_INTESTINE	1	1	0.2887	FALSE	462	80	0	856	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-TA--MT-TC	12	10	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1506	0.1255	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HT55_LARGE_INTESTINE	1	1	0.2761	FALSE	462	80	0	856	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND6--MT-TE	11	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.1381	0.0879	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT55_LARGE_INTESTINE	0.86	1	0.226	FALSE	499	1288	110	792	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND6--MT-TE	12	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1506	0.0377	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT55_LARGE_INTESTINE	0.94	1	0.1883	FALSE	499	1288	110	792	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND5--MT-ND4	3	33	MT-ND5	2775	chrM:14111:+	MT-ND4	5998	chrM:10945:+	INCL_NON_REF_SPLICE	NO	0	9983	1	0	0.0377	0.4142	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HT55_LARGE_INTESTINE	0	1	0.4519	FALSE	29	25	1	23	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	FTH1--ACTG1	10	3	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	11108	4	0	0.76	0.1255	0.0377	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HT55_LARGE_INTESTINE	0	0.76	0.1632	TRUE	0	0	0	64	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	10	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1255	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	1	1	0.1255	FALSE	231	204	14	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	7	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	29214	0	0	1	0.1004	0.0879	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	1	0.1883	FALSE	231	217	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	28097	9	0	0.62	0.1004	0.0879	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	0.62	0.1883	FALSE	231	217	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	23637	9	0	0.53	0.113	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	0.53	0.1256	FALSE	231	205	14	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	13	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	28027	0	0	1	0.0753	0.1632	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	1	0.2385	FALSE	231	217	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	13	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	27150	0	0	1	0.0753	0.1632	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	1	0.2385	FALSE	231	217	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	SLC1A5--MT-ND4L	8	3	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	2493	0	0	1	0.1004	0.0377	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HT55_LARGE_INTESTINE	0	1	0.1381	FALSE	0	0	0	189	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND5--MT-ND4	3	21	MT-ND5	2646	chrM:13982:+	MT-ND4	6028	chrM:10975:+	INCL_NON_REF_SPLICE	YES	2255	13830	0.01	0	0.0377	0.2636	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HT55_LARGE_INTESTINE	0	0.01	0.3013	FALSE	29	25	1	23	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND6--MT-TE	7	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0879	0.0502	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT55_LARGE_INTESTINE	0.92	1	0.1381	FALSE	499	1288	110	792	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	RABEP1--ALG14	7	4	RABEP1	15346	chr17:5266311:+	ALG14	31536	chr1:95530573:-	ONLY_REF_SPLICE	YES	41	286	0.21	0.04	0.0879	0.0502	{Klijn_CCL:Colo-Rectal=1},RABEP1->Oncogene{Bushman},chr17:5185558-5289129:+,rabaptin,_RAB_GTPase_binding_effector_protein_1,ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-	HT55_LARGE_INTESTINE	0.04	0.21	0.1381	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	RP11-120D5.1--MID1	7	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	35	0.85	0.24	0.0879	0.0502	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HT55_LARGE_INTESTINE	0.24	0.85	0.1381	FALSE	16	356	14	466	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	15	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	24892	0	0	1	0.0502	0.1883	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	1	0.2385	FALSE	231	217	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	19	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1788	0	0.01	1	0.0377	0.2385	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0.01	1	0.2762	FALSE	216	209	16	281	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	7	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	29113	0	0	1	0.0753	0.0879	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	1	0.1632	FALSE	231	217	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND5--MT-ND6	5	11	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	4587	1	0	0.0628	0.1381	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HT55_LARGE_INTESTINE	0	1	0.2009	FALSE	26	124	4	93	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-TA--MT-TC	5	11	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0628	0.1381	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HT55_LARGE_INTESTINE	1	1	0.2009	FALSE	462	80	0	856	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND5--MT-ND4	3	18	MT-ND5	2455	chrM:13791:+	MT-ND4	5931	chrM:10878:+	INCL_NON_REF_SPLICE	YES	4693	2388	0	0.01	0.0377	0.2259	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HT55_LARGE_INTESTINE	0	0.01	0.2636	FALSE	29	26	1	23	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	BMP4--RPS19	7	1	BMP4	8572	chr14:54416954:-	RPS19	12410	chr19:42364325:+	INCL_NON_REF_SPLICE	YES	1195	3	0.01	0.73	0.0879	0.0126	BMP4->bone_morphogenetic_protein_4,chr14:54416454-54425479:-,RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19	HT55_LARGE_INTESTINE	0.01	0.73	0.1005	TRUE	0	0	0	5	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0879	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	1	1	0.0879	FALSE	231	205	14	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	7	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	29036	0	0	1	0.0628	0.0879	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	1	0.1507	FALSE	231	217	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	11	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	27754	0	0	1	0.0502	0.1381	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	1	0.1883	FALSE	231	217	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19762	9	0	0.44	0.0753	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	0.44	0.0879	FALSE	230	193	14	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	13	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	27576	0	0	1	0.0377	0.1632	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	1	0.2009	FALSE	231	217	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	5	5	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0628	0.0628	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HT55_LARGE_INTESTINE	0.91	1	0.1256	FALSE	81	155	12	160	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0753	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	1	1	0.0753	FALSE	231	204	14	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	4	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	32021	861	0	0.01	0.0628	0.0502	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	0.01	0.113	FALSE	231	217	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND5--MT-ND6	3	12	MT-ND5	2761	chrM:14097:+	MT-ND6	6169	chrM:14317:-	INCL_NON_REF_SPLICE	YES	0	4683	1	0	0.0377	0.1506	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HT55_LARGE_INTESTINE	0	1	0.1883	FALSE	26	124	4	93	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	NRIP1--AF127936.7	5	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.64	1	0.0628	0.0502	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HT55_LARGE_INTESTINE	0.64	1	0.113	FALSE	292	1546	117	613	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	7	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	29214	0	0	1	0.0502	0.0879	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	1	0.1381	FALSE	231	217	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	10	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	27652	0	0	1	0.0377	0.1255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	1	0.1632	FALSE	231	217	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	EEF2--RPS28	5	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	4991	0	0	1	0.0628	0.0126	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HT55_LARGE_INTESTINE	0	1	0.0754	FALSE	0	0	0	100	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND5--MT-ND4	3	9	MT-ND5	2247	chrM:13583:+	MT-ND4	6112	chrM:11059:+	INCL_NON_REF_SPLICE	YES	5719	21880	0	0	0.0377	0.113	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HT55_LARGE_INTESTINE	0	0	0.1507	FALSE	47	29	1	24	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	8	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	26255	101	0	0.1	0.0377	0.1004	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	0.1	0.1381	FALSE	231	217	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	0	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0628	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	1	1	0.0628	FALSE	230	193	14	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-TA--MT-TC	3	8	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.1004	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HT55_LARGE_INTESTINE	1	1	0.1381	FALSE	462	80	0	856	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	7	MT-ND4	1844	chrM:11603:+	MT-ATP8	5503	chrM:8490:+	INCL_NON_REF_SPLICE	YES	26402	1179	0	0.01	0.0377	0.0879	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	0.01	0.1256	FALSE	231	217	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	7	MT-ND4	1795	chrM:11554:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	YES	27649	980	0	0.01	0.0377	0.0879	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	0.01	0.1256	FALSE	231	217	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	7	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	26255	2120	0	0	0.0377	0.0879	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	0	0.1256	FALSE	231	217	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-TA--MT-TC	3	6	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.0753	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HT55_LARGE_INTESTINE	1	1	0.113	FALSE	462	80	0	856	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	DOCK11--WDR44	4	1	DOCK11	17085	chrX:117724265:+	WDR44	56332	chrX:117521303:+	ONLY_REF_SPLICE	YES	19	21	0.21	0.19	0.0502	0.0126	LOCAL_REARRANGEMENT:+:[45937],DOCK11->chrX:117629861-117820126:+,dedicator_of_cytokinesis_11,WDR44->WD_repeat_domain_44,chrX:117480036-117583924:+	HT55_LARGE_INTESTINE	0.19	0.21	0.0628	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	5	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	32336	101	0	0.07	0.0377	0.0628	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	0.07	0.1005	FALSE	231	217	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	5	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	29291	0	0	1	0.0377	0.0628	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	1	0.1005	FALSE	231	216	16	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND5--MT-ND4	3	5	MT-ND5	1733	chrM:13069:+	MT-ND4	6288	chrM:11235:+	INCL_NON_REF_SPLICE	YES	5123	27452	0	0	0.0377	0.0628	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HT55_LARGE_INTESTINE	0	0	0.1005	FALSE	47	27	1	22	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MAP4--SMARCC1	3	4	MAP4	5952	chr3:48019355:-	SMARCC1	70396	chr3:47632327:-	ONLY_REF_SPLICE	YES	270	232	0.03	0.03	0.0377	0.0502	{Klijn_CCL:Skin=1,Colo-Rectal=1},NEIGHBORS[68586],MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-	HT55_LARGE_INTESTINE	0.03	0.03	0.0879	FALSE	0	0	0	1	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	SAMD5--SASH1	4	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0502	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HT55_LARGE_INTESTINE	1	1	0.0502	TRUE	53	396	64	110	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	26064	0	0	1	0.0377	0.0377	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	1	0.0754	FALSE	231	205	14	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND5--MT-ND4	3	2	MT-ND5	2730	chrM:14066:+	MT-ND4	6560	chrM:11507:+	INCL_NON_REF_SPLICE	YES	1	20353	0.83	0	0.0377	0.0251	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HT55_LARGE_INTESTINE	0	0.83	0.0628	FALSE	47	27	1	24	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1017	chrM:10776:+	MT-ATP8	5406	chrM:8393:+	INCL_NON_REF_SPLICE	YES	1697	0	0	1	0.0377	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	1	0.0503	FALSE	230	190	14	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	19450	9	0	0.31	0.0377	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	0.31	0.0503	FALSE	230	193	14	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	NO	19763	0	0	1	0.0377	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	1	0.0503	FALSE	230	197	14	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19942	101	0	0.04	0.0377	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT55_LARGE_INTESTINE	0	0.04	0.0503	FALSE	230	198	14	283	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0251	0.0628	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HT55_LARGE_INTESTINE	0.88	1	0.0879	FALSE	407	2205	196	549	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT55_LARGE_INTESTINE	1	1	0.0377	FALSE	499	1288	110	792	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0251	0.0502	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HT55_LARGE_INTESTINE	0.86	0.86	0.0753	FALSE	515	4851	409	746	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	CTC-432M15.3--UBE2D2	2	2	CTC-432M15.3	13051	chr5:130840319:-	UBE2D2	41403	chr5:138979957:+	ONLY_REF_SPLICE	YES	10	93	0.29	0.04	0.0251	0.0251	CTC-432M15.3->chr5:130761584-131132676:-,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	HT55_LARGE_INTESTINE	0.04	0.29	0.0502	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	NRIP1--AF127936.7	1	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	15	0	0.32	1	0.0126	0.0753	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HT55_LARGE_INTESTINE	0.32	1	0.0879	FALSE	164	806	69	479	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0126	0.0753	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HT55_LARGE_INTESTINE	1	1	0.0879	FALSE	192	492	57	212	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	C17orf53--LAPTM5	2	1	C17orf53	8825	chr17:42232779:+	LAPTM5	17015	chr1:31215396:-	ONLY_REF_SPLICE	YES	11	2	0.21	0.6	0.0251	0.0126	C17orf53->chr17:42219274-42239844:+,chromosome_17_open_reading_frame_53,LAPTM5->Oncogene{Bushman},chr1:31205316-31230667:-,lysosomal_protein_transmembrane_5	HT55_LARGE_INTESTINE	0.21	0.6	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	MAP7--MAP3K5	2	1	MAP7	1478	chr6:136871480:-	MAP3K5	28117	chr6:137026271:-	ONLY_REF_SPLICE	YES	30	66	0.09	0.04	0.0251	0.0126	LOCAL_REARRANGEMENT:-:[6228],MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7,MAP3K5->chr6:136878185-137113656:-,mitogen-activated_protein_kinase_kinase_kinase_5	HT55_LARGE_INTESTINE	0.04	0.09	0.0377	TRUE	0	0	0	1	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	RORA--ANXA2	2	1	RORA	13827	chr15:60884586:-	ANXA2	59082	chr15:60656722:-	ONLY_REF_SPLICE	NO	99	4185	0.03	0	0.0251	0.0126	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	HT55_LARGE_INTESTINE	0	0.03	0.0377	FALSE	2	1	0	8	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	C17orf76-AS1--C10orf76	2	0	C17orf76-AS1	1593	chr17:16342728:+	C10orf76	28662	chr10:103753360:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	C17orf76-AS1->chr17:16342136-16381992:+,C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76	HT55_LARGE_INTESTINE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	LDLR--EML2	2	0	LDLR	1254	chr19:11200291:+	EML2	30319	chr19:46145610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,EML2->chr19:46110252-46148887:-,echinoderm_microtubule_associated_protein_like_2	HT55_LARGE_INTESTINE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	POU2F1--MAEL	2	0	POU2F1	1130	chr1:167190195:+	MAEL	54320	chr1:166990322:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,MAEL->chr1:166958346-166991451:+,maelstrom_spermatogenic_transposon_silencer	HT55_LARGE_INTESTINE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	RABEP1--ALG14	2	0	RABEP1	15346	chr17:5266311:+	ALG14	34870	chr1:95492816:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	{Klijn_CCL:Colo-Rectal=1},RABEP1->Oncogene{Bushman},chr17:5185558-5289129:+,rabaptin,_RAB_GTPase_binding_effector_protein_1,ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-	HT55_LARGE_INTESTINE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000926
HT55_LARGE_INTESTINE	RP11-440L14.1--CTBP1	2	0	RP11-440L14.1	1078	chr4:775560:-	CTBP1	11273	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	RP11-440L14.1->chr4:756175-775637:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HT55_LARGE_INTESTINE	1	1	0.0251	TRUE	0	2	0	7	2	TRUE	ACH-000926
HT55_LARGE_INTESTINE	RP11-661P17.1--SLCO3A1	2	0	RP11-661P17.1	3525	chr15:92016546:+	SLCO3A1	15689	chr15:92459223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	GTEx_FI:{Pancreas=[count:3=pct:1.7]},RP11-661P17.1->chr15:91951938-92148441:+,SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1	HT55_LARGE_INTESTINE	1	1	0.0251	TRUE	1	11	1	4	10	TRUE	ACH-000926
HT55_LARGE_INTESTINE	C14orf37--PSMA3	1	2	C14orf37	2258	chr14:58758353:-	PSMA3	28539	chr14:58730423:+	ONLY_REF_SPLICE	YES	0	791	1	0	0.0126	0.0251	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	HT55_LARGE_INTESTINE	0	1	0.0377	FALSE	0	1	0	4	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0126	0.0251	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	HT55_LARGE_INTESTINE	0.75	1	0.0377	FALSE	1	20	0	46	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0126	0.0251	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	HT55_LARGE_INTESTINE	0.75	1	0.0377	FALSE	0	30	1	55	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	ADAP1--NOC4L	1	1	ADAP1	9672	chr7:959605:-	NOC4L	25427	chr12:132635526:+	ONLY_REF_SPLICE	YES	320	76	0.01	0.03	0.0126	0.0126	GTEx_v2:{count=2;pct=0.02%;dist=Colon_-_Transverse=2},ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	HT55_LARGE_INTESTINE	0.01	0.03	0.0252	FALSE	0	2	0	3	1	FALSE	ACH-000926
HT55_LARGE_INTESTINE	C2orf61--CALM2	1	1	C2orf61	7327	chr2:47335527:-	CALM2	22283	chr2:47397903:-	ONLY_REF_SPLICE	YES	57	98	0.03	0.02	0.0126	0.0126	LOCAL_REARRANGEMENT:-:[4704],C2orf61->chr2:47272677-47382517:-,chromosome_2_open_reading_frame_61,CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-	HT55_LARGE_INTESTINE	0.02	0.03	0.0252	TRUE	0	1	0	4	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	CTC-349C3.1--SKP1	1	1	CTC-349C3.1	7760	chr5:134509862:+	SKP1	24752	chr5:133509713:-	ONLY_REF_SPLICE	NO	1	395	0.67	0.01	0.0126	0.0126	CTC-349C3.1->chr5:134368970-134691744:+,SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-	HT55_LARGE_INTESTINE	0.01	0.67	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	GGACT--PCCA	1	1	GGACT	3102	chr13:101236079:-	PCCA	40151	chr13:101179929:+	ONLY_REF_SPLICE	YES	39	1611	0.05	0	0.0126	0.0126	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	HT55_LARGE_INTESTINE	0	0.05	0.0252	FALSE	7	15	0	10	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	HOXB3--HOXB9	1	1	HOXB3	2581	chr17:46667487:-	HOXB9	22377	chr17:46700497:-	ONLY_REF_SPLICE	NO	41	160	0.05	0.01	0.0126	0.0126	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[16244],HOXB3->chr17:46626232-46682274:-,homeobox_B3,HOXB9->chr17:46698518-46703839:-,homeobox_B9	HT55_LARGE_INTESTINE	0.01	0.05	0.0252	FALSE	0	0	0	2	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	MATR3--POLR3C	1	1	MATR3	4523	chr5:138614818:+	POLR3C	43015	chr1:145595220:-	ONLY_REF_SPLICE	YES	222	93	0.01	0.02	0.0126	0.0126	MATR3->chr5:138609441-138667360:+,matrin_3,POLR3C->chr1:145592605-145611025:-,polymerase_(RNA)_III_subunit_C	HT55_LARGE_INTESTINE	0.01	0.02	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	POLE4--RP11-355F16.1	1	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	NO	480	0	0	1	0.0126	0.0126	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	HT55_LARGE_INTESTINE	0	1	0.0252	FALSE	5	7	0	37	0	FALSE	ACH-000926
HT55_LARGE_INTESTINE	SFXN4--TIAL1	1	1	SFXN4	3607	chr10:120921852:-	TIAL1	25223	chr10:121338346:-	ONLY_REF_SPLICE	YES	222	241	0.01	0.01	0.0126	0.0126	SFXN4->chr10:120900279-120925179:-,sideroflexin_4,TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-	HT55_LARGE_INTESTINE	0.01	0.01	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000926
SCC4_UPPER_AERODIGESTIVE_TRACT	RSRC1--MLF1	323	101	RSRC1	9720	chr3:157921034:+	MLF1	29503	chr3:158310223:+	ONLY_REF_SPLICE	YES	55	11	0.89	0.97	3.6825	1.1515	NEIGHBORS[25433],RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MLF1->Oncogene{Bushman},chr3:158288952-158325041:+,myeloid_leukemia_factor_1	SCC4_UPPER_AERODIGESTIVE_TRACT	0.89	0.97	4.834	FALSE	0	1	0	2	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	EHBP1--MDH1	208	76	EHBP1	15845	chr2:63101667:+	MDH1	42351	chr2:63821622:+	ONLY_REF_SPLICE	YES	39	17	0.88	0.94	2.3714	0.8665	EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,MDH1->chr2:63815743-63834331:+,malate_dehydrogenase_1	SCC4_UPPER_AERODIGESTIVE_TRACT	0.88	0.94	3.2379	TRUE	0	1	0	1	1	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	CLTC--VMP1	132	60	CLTC	1316	chr17:57697534:+	VMP1	53132	chr17:57915656:+	ONLY_REF_SPLICE	YES	134	260	0.59	0.42	1.5049	0.6841	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SCC4_UPPER_AERODIGESTIVE_TRACT	0.42	0.59	2.189	FALSE	0	6	0	10	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	77	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8779	0.285	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	1.1629	TRUE	508	994	45	981	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ANP32B--NCL	58	0	ANP32B	9252	chr9:100774754:+	NCL	18675	chr2:232326421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6613	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.6613	TRUE	0	0	0	7	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	199	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	1159	0	0.15	1	0.0342	2.2688	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.15	1	2.303	FALSE	344	827	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	196	MT-ND4	1287	chrM:11046:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	142	0	0.58	1	0.0342	2.2346	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.58	1	2.2688	FALSE	344	827	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	194	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	21	0	0.9	1	0.0342	2.2118	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.9	1	2.246	FALSE	344	826	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	194	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	28	1	0.88	0.99	0.0342	2.2118	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.88	0.99	2.246	FALSE	344	826	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	45	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.513	0.0456	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.5586	FALSE	499	1288	110	792	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	45	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.513	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.513	TRUE	519	3926	326	965	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	142	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	9	0	0.94	1	0.1026	1.619	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.94	1	1.7216	FALSE	344	821	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	PDS5B--TDRD3	42	2	PDS5B	1167	chr13:33160730:+	TDRD3	51170	chr13:61013822:+	ONLY_REF_SPLICE	YES	2	0	0.96	1	0.4788	0.0228	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3	SCC4_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.5016	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MAP4--CDC25A	40	3	MAP4	1507	chr3:48130263:-	CDC25A	46363	chr3:48219478:-	ONLY_REF_SPLICE	YES	14	18	0.75	0.7	0.456	0.0342	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[67867],MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,CDC25A->Oncogene{Bushman},cell_division_cycle_25A,chr3:48198636-48229892:-	SCC4_UPPER_AERODIGESTIVE_TRACT	0.7	0.75	0.4902	TRUE	0	1	0	1	1	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RSRC1--MLF1	12	106	RSRC1	9720	chr3:157921034:+	MLF1	28430	chr3:158306641:+	ONLY_REF_SPLICE	YES	55	11	0.68	0.91	0.1368	1.2085	NEIGHBORS[25433],RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MLF1->Oncogene{Bushman},chr3:158288952-158325041:+,myeloid_leukemia_factor_1	SCC4_UPPER_AERODIGESTIVE_TRACT	0.68	0.91	1.3453	FALSE	0	1	0	2	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	34	10	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4177	3	0.01	0.94	0.3876	0.114	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC4_UPPER_AERODIGESTIVE_TRACT	0.01	0.94	0.5016	FALSE	43	37	8	105	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	132	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	10	0	0.93	1	0.0342	1.5049	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.93	1	1.5391	FALSE	344	826	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	121	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	169	0	0.42	1	0.0342	1.3795	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.42	1	1.4137	FALSE	344	827	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ANP32B--NCL	33	0	ANP32B	8161	chr9:100773632:+	NCL	19608	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3762	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.3762	TRUE	0	0	0	7	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	21	43	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	16175	0	0	1	0.2394	0.4902	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.7296	FALSE	328	800	43	304	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	29	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3306	0.1026	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.4332	FALSE	462	80	0	856	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	TMEM99--SCPEP1	25	20	TMEM99	4536	chr17:38990771:+	SCPEP1	21578	chr17:55079379:+	INCL_NON_REF_SPLICE	YES	71	172	0.39	0.21	0.285	0.228	TMEM99->chr17:38975358-38992522:+,transmembrane_protein_99,SCPEP1->chr17:55055466-55084129:+,serine_carboxypeptidase_1	SCC4_UPPER_AERODIGESTIVE_TRACT	0.21	0.39	0.513	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	24	23	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	8	0	0.85	1	0.2736	0.2622	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC4_UPPER_AERODIGESTIVE_TRACT	0.85	1	0.5358	FALSE	43	37	8	105	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	25	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.285	0.1938	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC4_UPPER_AERODIGESTIVE_TRACT	0.98	1	0.4788	FALSE	499	1288	110	792	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	STK3--OSR2	25	17	STK3	24069	chr8:99608260:-	OSR2	42287	chr8:99961067:+	ONLY_REF_SPLICE	YES	123	83	0.25	0.34	0.285	0.1938	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},LOCAL_INVERSION:-:+:[1576],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,OSR2->chr8:99956631-99964332:+,odd-skipped_related_transciption_factor_2	SCC4_UPPER_AERODIGESTIVE_TRACT	0.25	0.34	0.4788	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ATXN3--LRMP	28	0	ATXN3	1093	chr14:92572873:-	LRMP	32518	chr12:25205169:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3192	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.3192	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	92	MT-ND4	1144	chrM:10903:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	21	0	0.82	1	0.057	1.0489	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.82	1	1.1059	FALSE	344	826	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RP11-479O16.1--MSMO1	28	0	RP11-479O16.1	5346	chr5:58037747:-	MSMO1	15454	chr4:166263475:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3192	0	RP11-479O16.1->chr5:58037408-58112926:-,MSMO1->chr4:166248775-166264312:+,methylsterol_monooxygenase_1	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.3192	TRUE	0	0	0	5	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RSRC1--MLF1	1	108	RSRC1	10797	chr3:157943522:+	MLF1	28430	chr3:158306641:+	ONLY_REF_SPLICE	YES	56	11	0.66	0.91	0.0114	1.2313	NEIGHBORS[25433],RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MLF1->Oncogene{Bushman},chr3:158288952-158325041:+,myeloid_leukemia_factor_1	SCC4_UPPER_AERODIGESTIVE_TRACT	0.66	0.91	1.2427	FALSE	0	0	0	1	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RSRC1--MLF1	2	103	RSRC1	10797	chr3:157943522:+	MLF1	29503	chr3:158310223:+	ONLY_REF_SPLICE	YES	56	11	0.65	0.91	0.0228	1.1743	NEIGHBORS[25433],RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MLF1->Oncogene{Bushman},chr3:158288952-158325041:+,myeloid_leukemia_factor_1	SCC4_UPPER_AERODIGESTIVE_TRACT	0.65	0.91	1.1971	FALSE	0	0	0	2	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	AKAP1--SLC13A2	25	0	AKAP1	1307	chr17:55162759:+	SLC13A2	25627	chr17:26816232:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.285	0	AKAP1->A-kinase_anchoring_protein_1,chr17:55162453-55198710:+,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.285	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	19	7	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7232	59	0	0.31	0.2166	0.0798	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC4_UPPER_AERODIGESTIVE_TRACT	0	0.31	0.2964	FALSE	43	37	8	105	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	19	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	43	7	0.35	0.77	0.2166	0.0456	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SCC4_UPPER_AERODIGESTIVE_TRACT	0.35	0.77	0.2622	FALSE	59	21	0	114	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	CLTC--VMP1	4	61	CLTC	5948	chr17:57728677:+	VMP1	53132	chr17:57915656:+	ONLY_REF_SPLICE	YES	132	260	0.33	0.2	0.0456	0.6955	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SCC4_UPPER_AERODIGESTIVE_TRACT	0.2	0.33	0.7411	FALSE	0	0	0	2	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	64	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	10	0	0.87	1	0.0342	0.7297	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.87	1	0.7639	FALSE	344	826	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	58	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	9	0	0.87	1	0.0456	0.6613	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.87	1	0.7069	FALSE	344	821	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	16	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	21	4	0.45	0.81	0.1824	0.0114	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SCC4_UPPER_AERODIGESTIVE_TRACT	0.45	0.81	0.1938	FALSE	59	21	0	114	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	49	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.0456	0.5587	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.6043	FALSE	344	821	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	15	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.171	0.0456	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.2166	FALSE	499	1288	110	792	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	GALNT13--SEC61B	14	7	GALNT13	4761	chr2:154801152:+	SEC61B	27059	chr9:101984383:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1596	0.0798	GALNT13->chr2:154728426-155310361:+,polypeptide_N-acetylgalactosaminyltransferase_13,SEC61B->Sec61_translocon_beta_subunit,chr9:101984346-101992897:+	SCC4_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.2394	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	CRK--SMG6	12	13	CRK	2592	chr17:1359171:-	SMG6	12849	chr17:2203958:-	ONLY_REF_SPLICE	YES	46	5	0.35	0.83	0.1368	0.1482	CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog,SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-	SCC4_UPPER_AERODIGESTIVE_TRACT	0.35	0.83	0.285	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	39	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	52	0	0.46	1	0.057	0.4446	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.46	1	0.5016	FALSE	344	826	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RSRC1--MLF1	7	29	RSRC1	9720	chr3:157921034:+	MLF1	31496	chr3:158314651:+	ONLY_REF_SPLICE	YES	55	41	0.4	0.47	0.0798	0.3306	NEIGHBORS[25433],RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MLF1->Oncogene{Bushman},chr3:158288952-158325041:+,myeloid_leukemia_factor_1	SCC4_UPPER_AERODIGESTIVE_TRACT	0.4	0.47	0.4104	FALSE	0	0	0	2	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	13	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	11876	31246	0	0	0.1482	0.0342	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC4_UPPER_AERODIGESTIVE_TRACT	0	0	0.1824	FALSE	183	104	9	328	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	28	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	940	0	0.03	1	0.0684	0.3192	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.03	1	0.3876	FALSE	344	827	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	38	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	42	0	0.49	1	0.0342	0.4332	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.49	1	0.4674	FALSE	344	826	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	7	18	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0798	0.2052	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.285	FALSE	499	1288	110	792	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	27	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	68	0	0.31	1	0.0456	0.3078	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.31	1	0.3534	FALSE	344	826	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RSRC1--MLF1	5	22	RSRC1	6214	chr3:157841780:+	MLF1	29503	chr3:158310223:+	ONLY_REF_SPLICE	YES	76	11	0.26	0.71	0.057	0.2508	NEIGHBORS[25433],RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MLF1->Oncogene{Bushman},chr3:158288952-158325041:+,myeloid_leukemia_factor_1	SCC4_UPPER_AERODIGESTIVE_TRACT	0.26	0.71	0.3078	FALSE	0	0	0	3	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ANP32B--NCL	10	0	ANP32B	8188	chr9:100773659:+	NCL	18698	chr2:232326398:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.114	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.114	TRUE	0	0	0	7	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	TPST2--ANKRD22	10	0	TPST2	2202	chr22:26986017:-	ANKRD22	19759	chr10:90591783:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.114	0	TPST2->chr22:26921458-26992681:-,tyrosylprotein_sulfotransferase_2,ANKRD22->ankyrin_repeat_domain_22,chr10:90581889-90611575:-	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.114	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	27	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0342	0.3078	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC4_UPPER_AERODIGESTIVE_TRACT	0.94	1	0.342	FALSE	43	37	8	105	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	25	MT-ND5	2712	chrM:14048:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	15	0	0.65	1	0.0342	0.285	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC4_UPPER_AERODIGESTIVE_TRACT	0.65	1	0.3192	FALSE	43	37	8	105	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	25	MT-ND5	2852	chrM:14188:+	MT-ATP8	5903	chrM:8456:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.0342	0.285	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC4_UPPER_AERODIGESTIVE_TRACT	0.97	1	0.3192	FALSE	43	37	8	105	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	SLC1A5--MT-ND4L	9	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	494	0	0.02	1	0.1026	0.0114	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.02	1	0.114	FALSE	0	0	0	189	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	8	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	43	5	0.22	0.71	0.0912	0.0456	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SCC4_UPPER_AERODIGESTIVE_TRACT	0.22	0.71	0.1368	FALSE	59	21	0	114	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	24	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	NO	46	0	0.37	1	0.0342	0.2736	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.37	1	0.3078	FALSE	344	826	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	8	3	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	11364	28943	0	0	0.0912	0.0342	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC4_UPPER_AERODIGESTIVE_TRACT	0	0	0.1254	FALSE	183	104	9	328	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0912	0.0342	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.1254	FALSE	344	821	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	8	1	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	297	1	0.03	0.9	0.0912	0.0114	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC4_UPPER_AERODIGESTIVE_TRACT	0.03	0.9	0.1026	FALSE	351	233	23	137	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	7	4	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	37	5	0.23	0.69	0.0798	0.0456	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SCC4_UPPER_AERODIGESTIVE_TRACT	0.23	0.69	0.1254	FALSE	59	21	0	114	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	4	16	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	8	557	0.71	0.03	0.0456	0.1824	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC4_UPPER_AERODIGESTIVE_TRACT	0.03	0.71	0.228	FALSE	43	37	8	105	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	7	3	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	11874	30805	0	0	0.0798	0.0342	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC4_UPPER_AERODIGESTIVE_TRACT	0	0	0.114	FALSE	183	104	9	328	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	EHBP1--MDH1	7	2	EHBP1	15845	chr2:63101667:+	MDH1	46154	chr2:63826304:+	ONLY_REF_SPLICE	YES	39	193	0.19	0.04	0.0798	0.0228	EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,MDH1->chr2:63815743-63834331:+,malate_dehydrogenase_1	SCC4_UPPER_AERODIGESTIVE_TRACT	0.04	0.19	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RPSAP52--HMGA2	7	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	3	897	0.75	0.01	0.0798	0.0228	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SCC4_UPPER_AERODIGESTIVE_TRACT	0.01	0.75	0.1026	FALSE	0	59	0	125	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	144	0	0.11	1	0.0456	0.1482	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.1938	FALSE	344	827	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	144	0	0.11	1	0.0456	0.1482	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.1938	FALSE	344	827	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	17	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0342	0.1938	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC4_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.228	FALSE	499	1288	110	792	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	17	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0342	0.1938	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC4_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.228	FALSE	499	1288	110	792	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	7	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0798	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0798	FALSE	416	2512	207	587	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	6	3	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	11740	28179	0	0	0.0684	0.0342	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC4_UPPER_AERODIGESTIVE_TRACT	0	0	0.1026	FALSE	183	104	9	328	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	4	11	MT-ND5	2167	chrM:13503:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	5416	0	0	1	0.0456	0.1254	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.171	FALSE	43	37	8	105	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RP4-565E6.1--HYDIN	6	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0684	0.0342	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.1026	TRUE	456	1387	91	133	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	APP--MT-CO3	6	2	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	1238	12101	0.01	0	0.0684	0.0228	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SCC4_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0912	FALSE	0	0	0	26	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	6	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	18	27	0.31	0.23	0.0684	0.0228	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SCC4_UPPER_AERODIGESTIVE_TRACT	0.23	0.31	0.0912	TRUE	267	562	48	632	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	EHBP1--MDH1	2	18	EHBP1	15845	chr2:63101667:+	MDH1	44383	chr2:63824533:+	ONLY_REF_SPLICE	YES	39	192	0.34	0.09	0.0228	0.2052	EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,MDH1->chr2:63815743-63834331:+,malate_dehydrogenase_1	SCC4_UPPER_AERODIGESTIVE_TRACT	0.09	0.34	0.228	TRUE	0	1	0	1	1	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	PDS5B--TDRD3	6	1	PDS5B	1167	chr13:33160730:+	TDRD3	53321	chr13:61034514:+	ONLY_REF_SPLICE	YES	2	19	0.78	0.27	0.0684	0.0114	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3	SCC4_UPPER_AERODIGESTIVE_TRACT	0.27	0.78	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	PDS5B--TDRD3	6	1	PDS5B	1167	chr13:33160730:+	TDRD3	52255	chr13:61018817:+	ONLY_REF_SPLICE	YES	2	7	0.78	0.5	0.0684	0.0114	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3	SCC4_UPPER_AERODIGESTIVE_TRACT	0.5	0.78	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RP11-114H23.1--RP11-114H23.2	6	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0684	0.0114	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0798	FALSE	81	155	12	160	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RP11-155G15.2--RP11-1E3.1	6	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0684	0.0114	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0798	FALSE	46	201	11	112	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ANP32B--NCL	6	0	ANP32B	8161	chr9:100773632:+	NCL	18704	chr2:232326392:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0684	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0684	TRUE	0	0	0	7	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ATXN3--LRMP	6	0	ATXN3	1093	chr14:92572873:-	LRMP	35302	chr12:25215754:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0684	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ATXN3--LRMP	6	0	ATXN3	1093	chr14:92572873:-	LRMP	34240	chr12:25214526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0684	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	11	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.1254	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.1596	FALSE	462	80	0	856	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	10	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.114	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.1482	FALSE	462	80	0	856	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RP11-1E3.1--RP11-455B3.1	5	2	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0.0228	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0798	TRUE	13	49	2	38	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	9	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4342	31545	0	0	0.0342	0.1026	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC4_UPPER_AERODIGESTIVE_TRACT	0	0	0.1368	FALSE	183	104	9	328	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	5	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	26	5	0.19	0.55	0.057	0.0114	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SCC4_UPPER_AERODIGESTIVE_TRACT	0.19	0.55	0.0684	FALSE	59	21	0	114	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	9	MT-ND5	2178	chrM:13514:+	MT-ATP8	5875	chrM:8428:+	INCL_NON_REF_SPLICE	YES	5020	0	0	1	0.0342	0.1026	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.1368	FALSE	43	37	8	105	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.057	FALSE	499	1288	110	792	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	5	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.057	FALSE	515	4851	409	746	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	7	MT-ATP6	1179	chrM:8705:+	MT-CO1	5377	chrM:6599:+	INCL_NON_REF_SPLICE	YES	15813	30478	0	0	0.0342	0.0798	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC4_UPPER_AERODIGESTIVE_TRACT	0	0	0.114	FALSE	183	104	9	328	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	4	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	18	27	0.25	0.18	0.0456	0.0228	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SCC4_UPPER_AERODIGESTIVE_TRACT	0.18	0.25	0.0684	TRUE	267	562	48	632	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	4	2	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	31	6	0.16	0.5	0.0456	0.0228	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SCC4_UPPER_AERODIGESTIVE_TRACT	0.16	0.5	0.0684	FALSE	59	21	0	114	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	6	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0342	0.0684	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC4_UPPER_AERODIGESTIVE_TRACT	0.9	1	0.1026	FALSE	499	1288	110	792	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	5	MT-ATP6	1144	chrM:8670:+	MT-CO1	5381	chrM:6603:+	INCL_NON_REF_SPLICE	YES	13243	30571	0	0	0.0342	0.057	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC4_UPPER_AERODIGESTIVE_TRACT	0	0	0.0912	FALSE	183	104	9	328	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	5	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	13657	29133	0	0	0.0342	0.057	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC4_UPPER_AERODIGESTIVE_TRACT	0	0	0.0912	FALSE	183	104	9	328	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	4	1	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	25	3	0.17	0.62	0.0456	0.0114	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SCC4_UPPER_AERODIGESTIVE_TRACT	0.17	0.62	0.057	FALSE	59	21	0	114	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	1	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0.0114	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.057	FALSE	344	821	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	AKAP1--SLC13A2	4	0	AKAP1	2446	chr17:55163898:+	SLC13A2	25627	chr17:26816232:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0456	0	AKAP1->A-kinase_anchoring_protein_1,chr17:55162453-55198710:+,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0456	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ANP32B--NCL	4	0	ANP32B	8188	chr9:100773659:+	NCL	18716	chr2:232326380:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0456	TRUE	0	0	0	7	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	JSRP1--RPS28	4	0	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0456	TRUE	0	1	0	84	1	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0456	FALSE	499	1288	110	792	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0456	FALSE	462	80	0	856	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0456	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0456	FALSE	292	1546	117	613	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ZNF75D--RORA	4	0	ZNF75D	1827	chrX:134477186:-	RORA	24600	chr15:60970885:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0456	0	ZNF75D->chrX:134382867-134478012:-,zinc_finger_protein_75D,RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0456	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	3	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	YES	11895	28491	0	0	0.0342	0.0342	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC4_UPPER_AERODIGESTIVE_TRACT	0	0	0.0684	FALSE	183	104	9	328	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	3	MT-ND5	1828	chrM:13164:+	MT-ATP8	5867	chrM:8420:+	INCL_NON_REF_SPLICE	YES	4510	0	0	1	0.0342	0.0342	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC4_UPPER_AERODIGESTIVE_TRACT	0	1	0.0684	FALSE	43	37	8	105	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	2	MT-ATP6	1555	chrM:9081:+	MT-CO1	5956	chrM:7178:+	INCL_NON_REF_SPLICE	YES	4342	20908	0	0	0.0342	0.0228	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC4_UPPER_AERODIGESTIVE_TRACT	0	0	0.057	FALSE	183	104	9	328	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RP11-1L12.3--SLC5A12	3	2	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0342	0.0228	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	SCC4_UPPER_AERODIGESTIVE_TRACT	0.71	1	0.057	TRUE	3	101	0	60	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0.0228	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.057	FALSE	407	2205	196	549	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	GNGT1--AC002076.10	3	1	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	9	0	0.31	1	0.0342	0.0114	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	SCC4_UPPER_AERODIGESTIVE_TRACT	0.31	1	0.0456	FALSE	0	28	0	37	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	3	1	MT-ATP6	1111	chrM:8637:+	MT-CO2	4975	chrM:7879:+	INCL_NON_REF_SPLICE	YES	21	42	0.16	0.09	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SCC4_UPPER_AERODIGESTIVE_TRACT	0.09	0.16	0.0456	FALSE	59	21	0	114	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO2	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	21	4	0.16	0.5	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SCC4_UPPER_AERODIGESTIVE_TRACT	0.16	0.5	0.0456	FALSE	59	21	0	114	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	3	1	MT-ND3	1094	chrM:10152:+	MT-ATP8	4474	chrM:8493:+	INCL_NON_REF_SPLICE	YES	326	1228	0.01	0	0.0342	0.0114	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC4_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0456	FALSE	351	233	23	137	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	1	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	6	0	0.4	1	0.0342	0.0114	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.0456	FALSE	344	821	44	306	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	EHBP1--MDH1	3	0	EHBP1	15845	chr2:63101667:+	MDH1	48037	chr2:63831830:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,MDH1->chr2:63815743-63834331:+,malate_dehydrogenase_1	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	IGFBP7--MT-ND4L	3	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0342	FALSE	1	0	0	30	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	IGFBP7--MT-ND4L	3	0	IGFBP7	1161	chr4:57976391:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0342	FALSE	1	0	0	30	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	JUP--MT-CO3	3	0	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0342	FALSE	0	0	0	33	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	3	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0342	FALSE	125	705	46	456	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	2	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.67	0.0228	0.0228	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SCC4_UPPER_AERODIGESTIVE_TRACT	0.67	1	0.0456	TRUE	458	1351	185	561	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	2	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	3	1	0.57	0.0228	0.0228	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SCC4_UPPER_AERODIGESTIVE_TRACT	0.57	1	0.0456	TRUE	465	1949	224	605	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	C7orf50--MICALL2	2	1	C7orf50	12142	chr7:1040106:-	MICALL2	20574	chr7:1487401:-	ONLY_REF_SPLICE	YES	462	71	0.01	0.04	0.0228	0.0114	{Klijn_CCL:Brain=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MICALL2->MICAL_like_2,chr7:1468101-1499138:-	SCC4_UPPER_AERODIGESTIVE_TRACT	0.01	0.04	0.0342	FALSE	0	0	0	1	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	PDS5B--TDRD3	2	1	PDS5B	1167	chr13:33160730:+	TDRD3	56084	chr13:61057909:+	ONLY_REF_SPLICE	YES	2	24	0.6	0.11	0.0228	0.0114	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3	SCC4_UPPER_AERODIGESTIVE_TRACT	0.11	0.6	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	AKAP1--SLC13A2	2	0	AKAP1	1307	chr17:55162759:+	SLC13A2	26720	chr17:26817325:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	AKAP1->A-kinase_anchoring_protein_1,chr17:55162453-55198710:+,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	AKAP1--SLC13A2	2	0	AKAP1	1307	chr17:55162759:+	SLC13A2	24486	chr17:26814428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	AKAP1->A-kinase_anchoring_protein_1,chr17:55162453-55198710:+,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ARHGEF16--LRRC47	2	0	ARHGEF16	15684	chr1:3396477:+	LRRC47	21528	chr1:3703874:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	ARHGEF16->Rho_guanine_nucleotide_exchange_factor_16,chr1:3370990-3397677:+,LRRC47->chr1:3696784-3713068:-,leucine_rich_repeat_containing_47	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	ATXN3--LRMP	2	0	ATXN3	1093	chr14:92572873:-	LRMP	40592	chr12:25232178:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	ATXN3->ataxin_3,chr14:92524896-92572965:-,LRMP->Oncogene{Bushman},chr12:25173936-25261268:+,lymphoid_restricted_membrane_protein	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	DUSP2--PTMA	2	0	DUSP2	1680	chr2:96810500:-	PTMA	10700	chr2:232576058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	DUSP2->Oncogene{Bushman},chr2:96808905-96811179:-,dual_specificity_phosphatase_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0228	FALSE	93	270	15	244	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	HMGA2--LUM	1	2	HMGA2	5315	chr12:66232349:+	LUM	30462	chr12:91498096:-	ONLY_REF_SPLICE	YES	743	5	0	0.38	0.0114	0.0228	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,LUM->chr12:91496406-91505608:-,lumican	SCC4_UPPER_AERODIGESTIVE_TRACT	0	0.38	0.0342	FALSE	0	0	0	8	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	10	0	0.23	1	0.0114	0.0228	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCC4_UPPER_AERODIGESTIVE_TRACT	0.23	1	0.0342	FALSE	164	806	69	479	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	STK3--OSR2	1	2	STK3	25240	chr8:99607089:-	OSR2	42695	chr8:99961475:+	ONLY_REF_SPLICE	NO	132	114	0.02	0.03	0.0114	0.0228	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},LOCAL_INVERSION:-:+:[1576],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,OSR2->chr8:99956631-99964332:+,odd-skipped_related_transciption_factor_2	SCC4_UPPER_AERODIGESTIVE_TRACT	0.02	0.03	0.0342	TRUE	0	0	0	1	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	AKAP1--SLC13A2	1	1	AKAP1	2446	chr17:55163898:+	SLC13A2	24486	chr17:26814428:+	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0114	0.0114	AKAP1->A-kinase_anchoring_protein_1,chr17:55162453-55198710:+,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	SCC4_UPPER_AERODIGESTIVE_TRACT	0.33	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	EXT1--EIF3H	1	1	EXT1	2769	chr8:119122324:-	EIF3H	36550	chr8:117661165:-	ONLY_REF_SPLICE	YES	204	692	0.01	0	0.0114	0.0114	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SCC4_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	FAM20C--SUN1	1	1	FAM20C	5852	chr7:208976:+	SUN1	35945	chr7:897465:+	ONLY_REF_SPLICE	YES	80	432	0.02	0	0.0114	0.0114	FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SCC4_UPPER_AERODIGESTIVE_TRACT	0	0.02	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	GNGT1--AC002076.10	1	1	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	10	0	0.17	1	0.0114	0.0114	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	SCC4_UPPER_AERODIGESTIVE_TRACT	0.17	1	0.0228	FALSE	0	10	0	30	0	FALSE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	RP11-761E20.1--PLS3	1	1	RP11-761E20.1	1129	chrX:115085294:-	PLS3	10293	chrX:114844555:+	ONLY_REF_SPLICE	YES	0	9	1	0.18	0.0114	0.0114	RP11-761E20.1->chrX:115033604-115085422:-,PLS3->chrX:114795501-114885181:+,plastin_3	SCC4_UPPER_AERODIGESTIVE_TRACT	0.18	1	0.0228	TRUE	0	0	0	2	0	TRUE	ACH-000238
SCC4_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0114	0.0114	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SCC4_UPPER_AERODIGESTIVE_TRACT	1	1	0.0228	TRUE	62	24	1	171	0	FALSE	ACH-000238
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	61	33	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	31	5	0.75	0.95	0.7655	0.4141	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.95	1.1796	TRUE	181	1564	124	196	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SREBF2--MEI1	50	14	SREBF2	1254	chr22:42229362:+	MEI1	57157	chr22:42177689:+	ONLY_REF_SPLICE	YES	167	5	0.28	0.93	0.6275	0.1757	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.93	0.8032	TRUE	0	0	0	1	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	50	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6275	0.0627	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6902	FALSE	462	80	0	856	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	43	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5396	0.1757	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7153	TRUE	508	994	45	981	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	42	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5271	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5271	TRUE	0	0	0	518	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	22	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	156	5	0.13	0.82	0.2761	0.0125	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.82	0.2886	TRUE	519	3926	326	965	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.2008	0.1255	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.3263	FALSE	499	1288	110	792	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRGAP2B--IGKV1OR10-1	17	3	SRGAP2B	4458	chr1:144014093:+	IGKV1OR10-1	9840	chr10:42680942:+	ONLY_REF_SPLICE	YES	93	0	0.18	1	0.2133	0.0376	SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+,IGKV1OR10-1->chr10:42680787-42681239:+,immunoglobulin_kappa_variable_1/OR10-1_(pseudogene)	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.2509	TRUE	0	0	0	1	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	17	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2133	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2133	FALSE	499	1288	110	792	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	25	MT-CO3	1126	chrM:9332:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	NO	2	2	0.94	0.94	0.0753	0.3137	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	0.94	0.389	FALSE	189	492	56	216	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	10	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1255	0.0627	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1882	FALSE	462	80	0	856	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	10	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1255	0.0251	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1506	TRUE	0	1	0	84	1	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	9	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1129	0.0502	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1631	FALSE	515	4851	409	746	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	11	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0878	0.138	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.2258	FALSE	499	1288	110	792	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	8	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.77	1	0.1004	0.0251	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.1255	FALSE	189	492	56	216	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX4--FBXL19	6	6	STX4	3152	chr16:31046361:+	FBXL19	19914	chr16:30953437:+	ONLY_REF_SPLICE	YES	117	167	0.09	0.07	0.0753	0.0753	LOCAL_REARRANGEMENT:+:[84106],STX4->Oncogene{Bushman},chr16:31044210-31054296:+,syntaxin_4,FBXL19->F-box_and_leucine-rich_repeat_protein_19,chr16:30934376-30960104:+	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.09	0.1506	TRUE	0	0	0	1	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0878	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0878	FALSE	462	80	0	856	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	6	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0753	0.0502	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1255	FALSE	292	1546	117	613	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	6930	16199	0	0	0.0753	0.0251	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1004	FALSE	183	104	9	328	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0.0753	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.138	FALSE	462	80	0	856	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HCG4P5--EEF2	6	0	HCG4P5	1523	chr6:29910322:-	EEF2	5033	chr19:3985428:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0753	0	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0753	TRUE	0	0	0	3	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDRG1--RPS18	6	0	NDRG1	17796	chr8:134262694:-	RPS18	31712	chr6:33239868:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0753	0	NDRG1->N-myc_downstream_regulated_1,Oncogene{Bushman},chr8:134249414-134314265:-,RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0753	TRUE	0	0	0	2	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SREBF2--MEI1	5	3	SREBF2	1254	chr22:42229362:+	MEI1	58318	chr22:42180343:+	ONLY_REF_SPLICE	YES	167	12	0.05	0.4	0.0627	0.0376	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.4	0.1003	TRUE	0	0	0	1	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	10	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.81	1	0.0376	0.1255	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.1631	FALSE	499	1288	110	792	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SREBF2--MEI1	5	1	SREBF2	1254	chr22:42229362:+	MEI1	59763	chr22:42189833:+	ONLY_REF_SPLICE	YES	167	21	0.03	0.22	0.0627	0.0125	{Klijn_CCL:Lymphoid=1,Cervix=1},LOCAL_REARRANGEMENT:+:[33649],SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,MEI1->chr22:42095503-42195460:+,meiotic_double-stranded_break_formation_protein_1	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.22	0.0752	TRUE	0	0	0	1	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0627	FALSE	499	1288	110	792	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0502	0.0502	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1004	FALSE	499	1288	110	792	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	4	2	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0502	0.0251	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0753	TRUE	0	1	0	84	1	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0502	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0502	FALSE	499	1288	110	792	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	3	2	JSRP1	1204	chr19:2269555:-	RPS28	10765	chr19:8386400:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0.0251	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0627	TRUE	0	1	0	84	1	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	2	MT-CO3	1006	chrM:9212:+	MT-ATP6	5062	chrM:8804:+	INCL_NON_REF_SPLICE	YES	0	14	1	0.26	0.0376	0.0251	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.0627	FALSE	189	492	56	216	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0251	0.0753	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1004	FALSE	164	806	69	479	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0.0627	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0878	FALSE	407	2205	196	549	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ALDOA--RPS28	3	0	ALDOA	7437	chr16:30077209:+	RPS28	15371	chr19:8386406:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0376	TRUE	0	0	0	2	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAPDH--CHCHD3	3	0	GAPDH	4061	chr12:6646177:+	CHCHD3	11906	chr7:132720667:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0376	FALSE	499	1288	110	792	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS9--RPL3	3	0	RPS9	3304	chr19:54710180:+	RPL3	15341	chr22:39712801:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	RPS9->chr19:54704610-54752862:+,ribosomal_protein_S9,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0376	TRUE	0	0	0	2	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC074389.9--MAD1L1	2	0	AC074389.9	1083	chr7:1781845:-	MAD1L1	38596	chr7:1976533:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	LOCAL_REARRANGEMENT:-:[73502],AC074389.9->chr7:1778266-1781927:-,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--HN1	2	0	C17orf76-AS1	1593	chr17:16342728:+	HN1	17544	chr17:73144766:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	C17orf76-AS1->chr17:16342136-16381992:+,HN1->chr17:73131343-73164376:-,hematological_and_neurological_expressed_1	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C20orf197--CDH26	2	0	C20orf197	1084	chr20:58631063:+	CDH26	24474	chr20:58574641:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	LOCAL_REARRANGEMENT:+:[21914],C20orf197->chr20:58630980-58648008:+,chromosome_20_open_reading_frame_197,CDH26->cadherin_26,chr20:58533471-58609066:+	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HMGA2--LUM	2	0	HMGA2	5315	chr12:66232349:+	LUM	30462	chr12:91498096:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,LUM->chr12:91496406-91505608:-,lumican	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	0	0	0	8	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	2	0	RCC1	2920	chr1:28835417:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	1	10	0	18	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TJAP1--C6orf136	2	0	TJAP1	9770	chr6:43471444:+	C6orf136	18831	chr6:30618771:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	TJAP1->chr6:43445261-43474294:+,tight_junction_associated_protein_1,C6orf136->chr6:30614816-30620987:+,chromosome_6_open_reading_frame_136	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAUS4--PSMB5	1	1	HAUS4	4622	chr14:23420764:-	PSMB5	13346	chr14:23502883:-	ONLY_REF_SPLICE	NO	357	807	0.01	0	0.0125	0.0125	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_REARRANGEMENT:-:[59382],HAUS4->HAUS_augmin_like_complex_subunit_4,chr14:23415437-23426370:-,PSMB5->chr14:23485752-23504439:-,proteasome_subunit_beta_5	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.025	FALSE	0	0	0	2	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAUS4--PSMB5	1	1	HAUS4	2493	chr14:23424309:-	PSMB5	13346	chr14:23502883:-	ONLY_REF_SPLICE	YES	353	807	0.01	0	0.0125	0.0125	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_REARRANGEMENT:-:[59382],HAUS4->HAUS_augmin_like_complex_subunit_4,chr14:23415437-23426370:-,PSMB5->chr14:23485752-23504439:-,proteasome_subunit_beta_5	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	1	KANSL1	7536	chr17:44248221:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	37	0	0.05	1	0.0125	0.0125	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.025	TRUE	16	5	0	9	0	FALSE	ACH-000336
OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM39B--TRIM25	1	1	TMEM39B	3969	chr1:32540678:+	TRIM25	23940	chr17:54972965:-	ONLY_REF_SPLICE	YES	84	88	0.02	0.02	0.0125	0.0125	TMEM39B->chr1:32537632-32568467:+,transmembrane_protein_39B,TRIM25->chr17:54965270-54991399:-,tripartite_motif_containing_25	OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.025	TRUE	0	0	0	1	0	FALSE	ACH-000336
HS706T_BONE	TIMM23B--LINC00843	110	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1637	0.2962	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS706T_BONE	1	1	1.4599	TRUE	508	994	45	981	0	FALSE	ACH-000071
HS706T_BONE	TIMM23--RP11-464F9.1	62	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	187	3	0.26	0.96	0.6559	0.0529	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS706T_BONE	0.26	0.96	0.7088	TRUE	519	3926	326	965	0	FALSE	ACH-000071
HS706T_BONE	ASCL1--GLS	49	0	ASCL1	1745	chr12:103352208:+	GLS	6903	chr2:191745624:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5184	0	ASCL1->Oncogene{Bushman},achaete-scute_family_bHLH_transcription_factor_1,chr12:103351464-103354294:+,GLS->chr2:191745553-191830278:+,glutaminase	HS706T_BONE	1	1	0.5184	TRUE	0	0	0	1	0	TRUE	ACH-000071
HS706T_BONE	RP11-680G10.1--GSE1	46	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	13	1	0.79	0.4866	0.0423	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS706T_BONE	0.79	1	0.5289	TRUE	465	1949	224	605	0	FALSE	ACH-000071
HS706T_BONE	CALM3--MYL6	29	0	CALM3	4231	chr19:47109114:+	MYL6	12975	chr12:56553371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3068	0	HGNC_GENEFAM,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	HS706T_BONE	1	1	0.3068	TRUE	0	0	0	8	0	TRUE	ACH-000071
HS706T_BONE	RP11-680G10.1--GSE1	24	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.2539	0.0846	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS706T_BONE	0.97	1	0.3385	TRUE	458	1351	185	561	0	FALSE	ACH-000071
HS706T_BONE	PLXDC1--TAF13	22	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2327	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS706T_BONE	1	1	0.2327	TRUE	7	10	0	216	0	FALSE	ACH-000071
HS706T_BONE	MT-ND6--MT-TE	19	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.201	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS706T_BONE	1	1	0.201	FALSE	499	1288	110	792	0	FALSE	ACH-000071
HS706T_BONE	MT-TA--MT-TC	17	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1798	0.0106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS706T_BONE	1	1	0.1904	FALSE	462	80	0	856	0	FALSE	ACH-000071
HS706T_BONE	ASCL1--GLS	16	0	ASCL1	1745	chr12:103352208:+	GLS	6906	chr2:191745627:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1693	0	ASCL1->Oncogene{Bushman},achaete-scute_family_bHLH_transcription_factor_1,chr12:103351464-103354294:+,GLS->chr2:191745553-191830278:+,glutaminase	HS706T_BONE	1	1	0.1693	TRUE	0	0	0	1	0	TRUE	ACH-000071
HS706T_BONE	OR51S1--TP53I11	16	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1693	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HS706T_BONE	1	1	0.1693	TRUE	402	216	10	229	0	FALSE	ACH-000071
HS706T_BONE	C15orf57--CBX3	11	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	23	20	0.49	0.52	0.1164	0.1164	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS706T_BONE	0.49	0.52	0.2328	TRUE	267	562	48	632	0	FALSE	ACH-000071
HS706T_BONE	MT-ND6--MT-TE	12	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1269	0.0529	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS706T_BONE	0.94	1	0.1798	FALSE	499	1288	110	792	0	FALSE	ACH-000071
HS706T_BONE	MT-ND6--MT-ND5	12	3	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	1998	1	0.01	0.1269	0.0317	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS706T_BONE	0.01	1	0.1586	FALSE	101	855	57	72	0	FALSE	ACH-000071
HS706T_BONE	RP1-34H18.1--NAV3	12	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1269	0.0212	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HS706T_BONE	1	1	0.1481	TRUE	254	575	65	124	0	FALSE	ACH-000071
HS706T_BONE	CHSY3--HSPA8P4	11	4	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	86	0	0.15	1	0.1164	0.0423	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	HS706T_BONE	0.15	1	0.1587	FALSE	89	26	1	44	0	FALSE	ACH-000071
HS706T_BONE	NPM1P24--SET	11	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1164	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HS706T_BONE	1	1	0.1164	TRUE	0	0	0	434	0	FALSE	ACH-000071
HS706T_BONE	RP1-249H1.4--RP11-367G18.1	9	4	RP1-249H1.4	2789	chr6:114191469:-	RP11-367G18.1	10356	chr6:113948877:-	INCL_NON_REF_SPLICE	YES	17	1	0.43	0.93	0.0952	0.0423	RP1-249H1.4->chr6:114189178-114194516:-,RP11-367G18.1->chr6:113944737-113971276:-	HS706T_BONE	0.43	0.93	0.1375	TRUE	0	0	0	3	0	TRUE	ACH-000071
HS706T_BONE	MT-ND6--MT-TE	9	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0952	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS706T_BONE	1	1	0.0952	FALSE	499	1288	110	792	0	FALSE	ACH-000071
HS706T_BONE	RP11-96H19.1--RP11-446N19.1	8	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.0846	0.0423	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS706T_BONE	0.86	1	0.1269	FALSE	515	4851	409	746	0	FALSE	ACH-000071
HS706T_BONE	C15orf57--CBX3	6	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	20	20	0.41	0.41	0.0635	0.0846	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS706T_BONE	0.41	0.41	0.1481	TRUE	267	562	48	632	0	FALSE	ACH-000071
HS706T_BONE	FTH1--ACTB	7	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	5627	0	0	1	0.0741	0.0106	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS706T_BONE	0	1	0.0847	FALSE	1	0	0	97	0	FALSE	ACH-000071
HS706T_BONE	ASCL1--GLS	7	0	ASCL1	1745	chr12:103352208:+	GLS	6909	chr2:191745630:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0741	0	ASCL1->Oncogene{Bushman},achaete-scute_family_bHLH_transcription_factor_1,chr12:103351464-103354294:+,GLS->chr2:191745553-191830278:+,glutaminase	HS706T_BONE	1	1	0.0741	TRUE	0	0	0	1	0	TRUE	ACH-000071
HS706T_BONE	COL8A1--CMSS1	6	2	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	930	205	0.01	0.04	0.0635	0.0212	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	HS706T_BONE	0.01	0.04	0.0847	FALSE	76	19	3	26	0	FALSE	ACH-000071
HS706T_BONE	NRIP1--AF127936.7	6	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.54	1	0.0635	0.0106	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS706T_BONE	0.54	1	0.0741	FALSE	292	1546	117	613	0	FALSE	ACH-000071
HS706T_BONE	NIPA2--POLA1	6	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0635	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	HS706T_BONE	1	1	0.0635	TRUE	46	1352	75	139	0	FALSE	ACH-000071
HS706T_BONE	RP11-254I22.1--CTD-2337A12.1	6	0	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0635	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HS706T_BONE	1	1	0.0635	TRUE	6	15	3	35	0	FALSE	ACH-000071
HS706T_BONE	MT-TA--MT-TC	5	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0.0106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS706T_BONE	1	1	0.0635	FALSE	462	80	0	856	0	FALSE	ACH-000071
HS706T_BONE	MT-ND6--MT-ND5	4	3	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	1911	1	0	0.0423	0.0317	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS706T_BONE	0	1	0.074	FALSE	101	855	57	72	0	FALSE	ACH-000071
HS706T_BONE	CTD-2337A12.1--CAST	4	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	96	1	0.05	0.0423	0.0106	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS706T_BONE	0.05	1	0.0529	TRUE	347	1186	183	220	0	FALSE	ACH-000071
HS706T_BONE	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0317	0.0529	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS706T_BONE	0.8	1	0.0846	FALSE	407	2205	196	549	0	FALSE	ACH-000071
HS706T_BONE	SPARC--TMSB4X	4	1	SPARC	6899	chr5:151052704:-	TMSB4X	19035	chrX:12993234:+	INCL_NON_REF_SPLICE	YES	7125	0	0	1	0.0423	0.0106	GTEx&tcga_normals:2/3694=0.05%,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS706T_BONE	0	1	0.0529	FALSE	0	0	0	1	0	FALSE	ACH-000071
HS706T_BONE	MT-ND6--MT-TE	4	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS706T_BONE	1	1	0.0423	FALSE	499	1288	110	792	0	FALSE	ACH-000071
HS706T_BONE	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS706T_BONE	1	1	0.0423	FALSE	499	1288	110	792	0	FALSE	ACH-000071
HS706T_BONE	RPS6KB1--VMP1	3	4	RPS6KB1	8493	chr17:58003943:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	40	354	0.15	0.02	0.0317	0.0423	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HS706T_BONE	0.02	0.15	0.074	TRUE	0	1	0	2	1	FALSE	ACH-000071
HS706T_BONE	FTH1--ACTB	3	1	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	5778	1	0	0.8	0.0317	0.0106	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS706T_BONE	0	0.8	0.0423	FALSE	1	0	0	97	0	FALSE	ACH-000071
HS706T_BONE	PLXNB2--MT2A	3	1	PLXNB2	4885	chr22:50728393:-	MT2A	23273	chr16:56642513:+	INCL_NON_REF_SPLICE	YES	459	1	0.01	0.8	0.0317	0.0106	PLXNB2->chr22:50713408-50746056:-,plexin_B2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS706T_BONE	0.01	0.8	0.0423	FALSE	0	0	0	5	0	FALSE	ACH-000071
HS706T_BONE	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	0	0.88	1	0.0212	0.0529	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS706T_BONE	0.88	1	0.0741	FALSE	467	2173	244	435	0	FALSE	ACH-000071
HS706T_BONE	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0212	0.0529	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS706T_BONE	0.78	1	0.0741	FALSE	275	511	55	178	0	FALSE	ACH-000071
HS706T_BONE	MT-ND6--MT-ND5	3	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS706T_BONE	1	1	0.0317	FALSE	101	855	57	72	0	FALSE	ACH-000071
HS706T_BONE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS706T_BONE	1	1	0.0317	FALSE	499	1288	110	792	0	FALSE	ACH-000071
HS706T_BONE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS706T_BONE	1	1	0.0317	FALSE	462	80	0	856	0	FALSE	ACH-000071
HS706T_BONE	RP11-344E13.3--UBBP4	2	4	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0212	0.0423	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	HS706T_BONE	0.75	1	0.0635	TRUE	23	13	0	54	0	FALSE	ACH-000071
HS706T_BONE	MANBA--UBE2D3	2	2	MANBA	1277	chr4:103681875:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	YES	71	483	0.05	0.01	0.0212	0.0212	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	HS706T_BONE	0.01	0.05	0.0424	FALSE	12	9	1	12	0	FALSE	ACH-000071
HS706T_BONE	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.88	1	0.0106	0.0635	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS706T_BONE	0.88	1	0.0741	FALSE	192	492	57	212	0	FALSE	ACH-000071
HS706T_BONE	RP11-120D5.1--MID1	2	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	2	0.3	0.6	0.0212	0.0106	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HS706T_BONE	0.3	0.6	0.0318	FALSE	0	48	1	163	0	FALSE	ACH-000071
HS706T_BONE	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0.0106	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS706T_BONE	1	1	0.0318	TRUE	62	24	1	171	0	FALSE	ACH-000071
HS706T_BONE	CLDN12--TNS3	2	0	CLDN12	4834	chr7:90034922:+	TNS3	42584	chr7:47454804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	CLDN12->chr7:90013035-90142716:+,claudin_12,TNS3->chr7:47314752-47622156:-,tensin_3	HS706T_BONE	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000071
HS706T_BONE	CRIM1--FEZ2	2	0	CRIM1	8239	chr2:36669878:+	FEZ2	33882	chr2:36818154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	HS706T_BONE	1	1	0.0212	TRUE	0	1	0	3	0	FALSE	ACH-000071
HS706T_BONE	CRIM1--FEZ2	2	0	CRIM1	18863	chr2:36749456:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	HS706T_BONE	1	1	0.0212	TRUE	2	2	0	15	0	FALSE	ACH-000071
HS706T_BONE	RPS6KB1--VMP1	1	4	RPS6KB1	16932	chr17:58022879:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	NO	37	354	0.12	0.01	0.0106	0.0423	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	HS706T_BONE	0.01	0.12	0.0529	FALSE	0	0	0	2	0	FALSE	ACH-000071
HS706T_BONE	ACTN4--SEPT2	1	1	ACTN4	15911	chr19:39215205:+	SEPT2	42075	chr2:242289488:+	ONLY_REF_SPLICE	YES	1569	615	0	0	0.0106	0.0106	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2	HS706T_BONE	0	0	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000071
HS706T_BONE	C7orf50--MAD1L1	1	1	C7orf50	3078	chr7:1166893:-	MAD1L1	43478	chr7:2054277:-	ONLY_REF_SPLICE	YES	146	62	0.01	0.03	0.0106	0.0106	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	HS706T_BONE	0.01	0.03	0.0212	FALSE	0	0	0	2	0	FALSE	ACH-000071
HS706T_BONE	DIP2C--ZMYND11	1	1	DIP2C	43087	chr10:327140:-	ZMYND11	52575	chr10:225934:+	ONLY_REF_SPLICE	NO	64	23	0.03	0.08	0.0106	0.0106	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[19553],DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	HS706T_BONE	0.03	0.08	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000071
HS706T_BONE	DIP2C--ZMYND11	1	1	DIP2C	1250	chr10:735434:-	ZMYND11	52575	chr10:225934:+	ONLY_REF_SPLICE	NO	64	23	0.03	0.08	0.0106	0.0106	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[19553],DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	HS706T_BONE	0.03	0.08	0.0212	TRUE	0	0	0	5	0	FALSE	ACH-000071
HS706T_BONE	NIPSNAP3A--CHMP1A	1	1	NIPSNAP3A	6258	chr9:107521452:+	CHMP1A	14987	chr16:89713739:-	ONLY_REF_SPLICE	YES	156	231	0.01	0.01	0.0106	0.0106	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},NIPSNAP3A->chr9:107509969-107522403:+,nipsnap_homolog_3A,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HS706T_BONE	0.01	0.01	0.0212	FALSE	0	4	0	1	0	FALSE	ACH-000071
HS706T_BONE	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	21	0	0.09	1	0.0106	0.0106	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS706T_BONE	0.09	1	0.0212	FALSE	164	806	69	479	0	FALSE	ACH-000071
HS706T_BONE	RAB8B--TPM1	1	1	RAB8B	1280	chr15:63481947:+	TPM1	25107	chr15:63349184:+	ONLY_REF_SPLICE	YES	69	2145	0.03	0	0.0106	0.0106	RAB8B->RAB8B,_member_RAS_oncogene_family,chr15:63481668-63559981:+,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	HS706T_BONE	0	0.03	0.0212	FALSE	1	0	0	3	0	FALSE	ACH-000071
HS706T_BONE	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0.0106	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HS706T_BONE	1	1	0.0212	FALSE	416	2512	207	587	0	FALSE	ACH-000071
HCC1187_BREAST	CTNND1--SMTNL1	281	135	CTNND1	2585	chr11:57529518:+	SMTNL1	35466	chr11:57317441:+	ONLY_REF_SPLICE	YES	294	0	0.59	1	2.9591	1.4216	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SMTNL1->chr11:57308979-57318108:+,smoothelin-like_1	HCC1187_BREAST	0.59	1	4.3807	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	CTAGE5--GEMIN2	245	77	CTAGE5	23531	chr14:39796226:+	GEMIN2	43661	chr14:39605644:+	ONLY_REF_SPLICE	YES	30	28	0.91	0.92	2.58	0.8109	CTAGE5->CTAGE_family_member_5,chr14:39734488-39856156:+,GEMIN2->chr14:39583427-39606177:+,gem_nuclear_organelle_associated_protein_2	HCC1187_BREAST	0.91	0.92	3.3909	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	PUM1--TRERF1	176	69	PUM1	26417	chr1:31413998:-	TRERF1	37568	chr6:42237586:-	ONLY_REF_SPLICE	YES	108	0	0.69	1	1.8534	0.7266	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	HCC1187_BREAST	0.69	1	2.58	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO2	189	4	MT-ATP6	1408	chrM:8934:+	MT-CO2	5049	chrM:7953:+	INCL_NON_REF_SPLICE	YES	49	2	0.8	0.99	1.9903	0.0421	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1187_BREAST	0.8	0.99	2.0324	FALSE	59	21	0	114	0	FALSE	ACH-000111
HCC1187_BREAST	AGPAT5--MCPH1	107	56	AGPAT5	7728	chr8:6599272:+	MCPH1	36611	chr8:6500515:+	ONLY_REF_SPLICE	YES	70	15	0.7	0.92	1.1268	0.5897	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[64734],AGPAT5->1-acylglycerol-3-phosphate_O-acyltransferase_5,chr8:6565878-6617184:+,MCPH1->Oncogene{Bushman},chr8:6264113-6501144:+,microcephalin_1	HCC1187_BREAST	0.7	0.92	1.7165	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	KMT2E--LHFPL3	103	38	KMT2E	16085	chr7:104722244:+	LHFPL3	39671	chr7:104546634:+	ONLY_REF_SPLICE	YES	63	0	0.69	1	1.0847	0.4002	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,LHFPL3->chr7:103969104-104549001:+,lipoma_HMGIC_fusion_partner-like_3	HCC1187_BREAST	0.69	1	1.4849	TRUE	0	2	0	1	2	TRUE	ACH-000111
HCC1187_BREAST	TIMM23B--LINC00843	105	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1057	0.2738	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1187_BREAST	0.99	1	1.3795	TRUE	508	994	45	981	0	FALSE	ACH-000111
HCC1187_BREAST	PPFIBP1--SMCO2	84	29	PPFIBP1	1935	chr12:27677298:+	SMCO2	50047	chr12:27648613:+	ONLY_REF_SPLICE	YES	37	1	0.75	0.99	0.8846	0.3054	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	HCC1187_BREAST	0.75	0.99	1.19	TRUE	0	3	0	3	2	TRUE	ACH-000111
HCC1187_BREAST	ALDOA--SHISA9	85	16	ALDOA	7476	chr16:30077248:+	SHISA9	21562	chr16:13010545:+	ONLY_REF_SPLICE	YES	997	2	0.09	0.98	0.8951	0.1685	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,SHISA9->chr16:12995477-13334272:+,shisa_family_member_9	HCC1187_BREAST	0.09	0.98	1.0636	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	KANSL1--ARL17B	73	37	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	25	9	0.81	0.92	0.7687	0.3896	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC1187_BREAST	0.81	0.92	1.1583	TRUE	181	1564	124	196	0	FALSE	ACH-000111
HCC1187_BREAST	POFUT1--TM9SF4	75	27	POFUT1	6999	chr20:30816258:+	TM9SF4	22684	chr20:30730785:+	ONLY_REF_SPLICE	YES	57	182	0.64	0.36	0.7898	0.2843	{Klijn_CCL:Lung=1,Breast=1},LOCAL_REARRANGEMENT:+:[40622],POFUT1->chr20:30795683-30826470:+,protein_O-fucosyltransferase_1,TM9SF4->chr20:30697309-30755061:+,transmembrane_9_superfamily_member_4	HCC1187_BREAST	0.36	0.64	1.0741	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	SEC22B--NOTCH2	66	42	SEC22B	1402	chr1:145096621:+	NOTCH2	47735	chr1:120465401:-	ONLY_REF_SPLICE	YES	146	75	0.43	0.59	0.695	0.4423	SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+,NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2	HCC1187_BREAST	0.43	0.59	1.1373	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	CTCF--SCUBE2	67	19	CTCF	2435	chr16:67605167:+	SCUBE2	18891	chr11:9144441:-	ONLY_REF_SPLICE	YES	47	0	0.65	1	0.7055	0.2001	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,SCUBE2->chr11:9041071-9159661:-,signal_peptide,_CUB_domain_and_EGF_like_domain_containing_2	HCC1187_BREAST	0.65	1	0.9056	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	RP11-123O10.4--GRIP1	66	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.695	0.0842	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1187_BREAST	1	1	0.7792	FALSE	416	2512	207	587	0	FALSE	ACH-000111
HCC1187_BREAST	TIMM23--RP11-464F9.1	62	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	160	7	0.29	0.9	0.6529	0.0211	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC1187_BREAST	0.29	0.9	0.674	TRUE	519	3926	326	965	0	FALSE	ACH-000111
HCC1187_BREAST	OR51S1--TP53I11	58	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6108	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HCC1187_BREAST	1	1	0.6108	TRUE	402	216	10	229	0	FALSE	ACH-000111
HCC1187_BREAST	CTNND1--SMTNL1	14	137	CTNND1	2658	chr11:57529591:+	SMTNL1	35466	chr11:57317441:+	ONLY_REF_SPLICE	YES	380	0	0.28	1	0.1474	1.4427	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SMTNL1->chr11:57308979-57318108:+,smoothelin-like_1	HCC1187_BREAST	0.28	1	1.5901	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	KLK5--CDH23	45	8	KLK5	3986	chr19:51451896:-	CDH23	54327	chr10:73501451:+	ONLY_REF_SPLICE	YES	456	0	0.1	1	0.4739	0.0842	{Klijn_CCL:Breast=1},KLK5->Oncogene{Bushman},chr19:51446559-51456349:-,kallikrein_related_peptidase_5,CDH23->cadherin-related_23,chr10:73156691-73575702:+	HCC1187_BREAST	0.1	1	0.5581	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	PLXND1--TMCC1	39	28	PLXND1	11171	chr3:129293179:-	TMCC1	45922	chr3:129390107:-	ONLY_REF_SPLICE	YES	58	35	0.54	0.66	0.4107	0.2949	Cosmic{samples=4,mutations=4,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[40974],PLXND1->chr3:129274018-129325661:-,plexin_D1,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	HCC1187_BREAST	0.54	0.66	0.7056	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ND4L	3	169	MT-ND4	1519	chrM:11278:+	MT-ND4L	5394	chrM:10485:+	INCL_NON_REF_SPLICE	YES	404	0	0.3	1	0.0316	1.7797	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1187_BREAST	0.3	1	1.8113	FALSE	344	827	44	306	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND6--MT-TE	44	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.4633	0.0316	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1187_BREAST	0.98	1	0.4949	FALSE	499	1288	110	792	0	FALSE	ACH-000111
HCC1187_BREAST	RP11-680G10.1--GSE1	37	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	94	1	0.31	0.3896	0.0632	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1187_BREAST	0.31	1	0.4528	TRUE	465	1949	224	605	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ND4L	6	127	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.98	1	0.0632	1.3374	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1187_BREAST	0.98	1	1.4006	FALSE	344	821	44	306	0	FALSE	ACH-000111
HCC1187_BREAST	RP11-680G10.1--GSE1	34	11	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.83	0.358	0.1158	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1187_BREAST	0.83	1	0.4738	TRUE	458	1351	185	561	0	FALSE	ACH-000111
HCC1187_BREAST	PPFIBP1--SMCO2	27	36	PPFIBP1	1935	chr12:27677298:+	SMCO2	48990	chr12:27647233:+	ONLY_REF_SPLICE	YES	37	1	0.63	0.98	0.2843	0.3791	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	HCC1187_BREAST	0.63	0.98	0.6634	TRUE	0	1	0	3	1	TRUE	ACH-000111
HCC1187_BREAST	CTNND1--SMTNL1	1	137	CTNND1	2607	chr11:57529540:+	SMTNL1	35466	chr11:57317441:+	ONLY_REF_SPLICE	YES	373	0	0.27	1	0.0105	1.4427	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SMTNL1->chr11:57308979-57318108:+,smoothelin-like_1	HCC1187_BREAST	0.27	1	1.4532	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	PLXND1--TMCC1	31	13	PLXND1	8651	chr3:129297172:-	TMCC1	45922	chr3:129390107:-	ONLY_REF_SPLICE	YES	85	35	0.34	0.56	0.3264	0.1369	Cosmic{samples=4,mutations=4,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[40974],PLXND1->chr3:129274018-129325661:-,plexin_D1,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	HCC1187_BREAST	0.34	0.56	0.4633	TRUE	0	1	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	AKAP13--PDE8A	26	20	AKAP13	4798	chr15:86028984:+	PDE8A	69389	chr15:85607601:+	ONLY_REF_SPLICE	YES	14	11	0.77	0.81	0.2738	0.2106	{Klijn_CCL:Breast=1},AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	HCC1187_BREAST	0.77	0.81	0.4844	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ND4L	5	98	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	36	0	0.74	1	0.0527	1.032	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1187_BREAST	0.74	1	1.0847	FALSE	344	827	44	306	0	FALSE	ACH-000111
HCC1187_BREAST	PLXND1--TMCC1	20	37	PLXND1	11913	chr3:129292437:-	TMCC1	45922	chr3:129390107:-	ONLY_REF_SPLICE	YES	57	35	0.5	0.62	0.2106	0.3896	Cosmic{samples=4,mutations=4,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[40974],PLXND1->chr3:129274018-129325661:-,plexin_D1,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	HCC1187_BREAST	0.5	0.62	0.6002	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	ALDOA--SHISA9	18	22	ALDOA	7476	chr16:30077248:+	SHISA9	17390	chr16:13002336:+	ONLY_REF_SPLICE	YES	997	3	0.04	0.93	0.1896	0.2317	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,SHISA9->chr16:12995477-13334272:+,shisa_family_member_9	HCC1187_BREAST	0.04	0.93	0.4213	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	AGPAT5--MCPH1	7	57	AGPAT5	7728	chr8:6599272:+	MCPH1	36297	chr8:6500201:+	ONLY_REF_SPLICE	YES	70	15	0.48	0.81	0.0737	0.6002	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[64734],AGPAT5->1-acylglycerol-3-phosphate_O-acyltransferase_5,chr8:6565878-6617184:+,MCPH1->Oncogene{Bushman},chr8:6264113-6501144:+,microcephalin_1	HCC1187_BREAST	0.48	0.81	0.6739	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO2	19	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	55	19	0.28	0.53	0.2001	0.0211	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1187_BREAST	0.28	0.53	0.2212	FALSE	59	21	0	114	0	FALSE	ACH-000111
HCC1187_BREAST	PLXND1--TMCC1	15	17	PLXND1	9741	chr3:129294609:-	TMCC1	45922	chr3:129390107:-	ONLY_REF_SPLICE	YES	71	35	0.31	0.48	0.158	0.179	Cosmic{samples=4,mutations=4,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[40974],PLXND1->chr3:129274018-129325661:-,plexin_D1,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	HCC1187_BREAST	0.31	0.48	0.337	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	MT-ND6--MT-TE	16	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1685	0.1264	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1187_BREAST	0.97	1	0.2949	FALSE	499	1288	110	792	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ND4L	3	45	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0316	0.4739	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1187_BREAST	0.98	1	0.5055	FALSE	344	821	44	306	0	FALSE	ACH-000111
HCC1187_BREAST	CTD-2012K14.6--AMPD3	13	3	CTD-2012K14.6	1664	chr16:67597198:-	AMPD3	18428	chr11:10483062:+	ONLY_REF_SPLICE	YES	0	2	1	0.89	0.1369	0.0316	CTD-2012K14.6->chr16:67583117-67597861:-,AMPD3->adenosine_monophosphate_deaminase_3,chr11:10329860-10529126:+	HCC1187_BREAST	0.89	1	0.1685	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	MT-ND6--MT-TE	13	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1369	0.0316	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1187_BREAST	0.94	1	0.1685	FALSE	499	1288	110	792	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO1	13	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8553	14334	0	0	0.1369	0.0105	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1187_BREAST	0	0	0.1474	FALSE	183	104	9	328	0	FALSE	ACH-000111
HCC1187_BREAST	AL589743.1--RP11-536C10.17	13	0	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1369	0	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	HCC1187_BREAST	1	1	0.1369	TRUE	0	33	0	45	33	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	13	0	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1369	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	1	1	0.1369	FALSE	231	217	16	283	0	FALSE	ACH-000111
HCC1187_BREAST	PLXND1--TMCC1	8	19	PLXND1	10038	chr3:129294312:-	TMCC1	45922	chr3:129390107:-	ONLY_REF_SPLICE	YES	71	35	0.28	0.44	0.0842	0.2001	Cosmic{samples=4,mutations=4,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[40974],PLXND1->chr3:129274018-129325661:-,plexin_D1,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	HCC1187_BREAST	0.28	0.44	0.2843	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	SEC22B--NOTCH2	2	43	SEC22B	2457	chr1:145100260:+	NOTCH2	47735	chr1:120465401:-	ONLY_REF_SPLICE	YES	194	75	0.19	0.38	0.0211	0.4528	SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+,NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2	HCC1187_BREAST	0.19	0.38	0.4739	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	MT-ND3--MT-ATP8	11	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1158	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	1	1	0.1158	FALSE	351	233	23	137	0	FALSE	ACH-000111
HCC1187_BREAST	PPFIBP1--SMCO2	2	36	PPFIBP1	1935	chr12:27677298:+	SMCO2	47438	chr12:27641393:+	ONLY_REF_SPLICE	YES	37	1	0.51	0.97	0.0211	0.3791	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	HCC1187_BREAST	0.51	0.97	0.4002	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO2	10	2	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	55	14	0.18	0.46	0.1053	0.0211	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1187_BREAST	0.18	0.46	0.1264	FALSE	59	21	0	114	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO1	9	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0948	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1187_BREAST	1	1	0.0948	FALSE	183	104	9	328	0	FALSE	ACH-000111
HCC1187_BREAST	AC012309.5--EXOSC10	7	7	AC012309.5	2355	chr19:37746884:+	EXOSC10	28666	chr1:11131030:-	ONLY_REF_SPLICE	YES	0	123	1	0.1	0.0737	0.0737	AC012309.5->chr19:37742814-37756437:+,EXOSC10->chr1:11126675-11159938:-,exosome_component_10	HCC1187_BREAST	0.1	1	0.1474	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	FGFR2--COL14A1	8	3	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	31	5	0.26	0.69	0.0842	0.0316	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	HCC1187_BREAST	0.26	0.69	0.1158	TRUE	0	0	0	32	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ND4L	3	23	MT-ND4	1126	chrM:10885:+	MT-ND4L	5658	chrM:10749:+	INCL_NON_REF_SPLICE	YES	8	0	0.76	1	0.0316	0.2422	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1187_BREAST	0.76	1	0.2738	FALSE	344	826	44	306	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ND4L	7	6	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0737	0.0632	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1187_BREAST	1	1	0.1369	FALSE	344	821	44	306	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND6--MT-TE	4	18	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0421	0.1896	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1187_BREAST	0.96	1	0.2317	FALSE	499	1288	110	792	0	FALSE	ACH-000111
HCC1187_BREAST	CTCF--SCUBE2	3	21	CTCF	2435	chr16:67605167:+	SCUBE2	18887	chr11:9144445:-	INCL_NON_REF_SPLICE	YES	47	0	0.34	1	0.0316	0.2211	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,SCUBE2->chr11:9041071-9159661:-,signal_peptide,_CUB_domain_and_EGF_like_domain_containing_2	HCC1187_BREAST	0.34	1	0.2527	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	SUSD1--PTBP3	8	1	SUSD1	8228	chr9:114886537:-	PTBP3	29077	chr9:115060196:-	ONLY_REF_SPLICE	YES	8	246	0.53	0.04	0.0842	0.0105	LOCAL_REARRANGEMENT:-:[43027],SUSD1->chr9:114803065-114937688:-,sushi_domain_containing_1,PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3	HCC1187_BREAST	0.04	0.53	0.0947	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	1	1	0.0842	FALSE	230	198	14	283	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	8	0	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	1	1	0.0842	FALSE	231	217	16	283	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND6--MT-TE	5	12	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0527	0.1264	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1187_BREAST	0.94	1	0.1791	FALSE	499	1288	110	792	0	FALSE	ACH-000111
HCC1187_BREAST	TMX2--SMTNL1	7	4	TMX2	2269	chr11:57505140:+	SMTNL1	13679	chr11:57317441:+	ONLY_REF_SPLICE	YES	281	0	0.04	1	0.0737	0.0421	{Klijn_CCL:Stomach=1},TMX2->chr11:57480072-57508445:+,thioredoxin_related_transmembrane_protein_2,SMTNL1->chr11:57308979-57318108:+,smoothelin-like_1	HCC1187_BREAST	0.04	1	0.1158	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	AGPAT5--MCPH1	2	23	AGPAT5	5462	chr8:6590171:+	MCPH1	36297	chr8:6500201:+	ONLY_REF_SPLICE	YES	52	15	0.32	0.62	0.0211	0.2422	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[64734],AGPAT5->1-acylglycerol-3-phosphate_O-acyltransferase_5,chr8:6565878-6617184:+,MCPH1->Oncogene{Bushman},chr8:6264113-6501144:+,microcephalin_1	HCC1187_BREAST	0.32	0.62	0.2633	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	AGPAT5--MCPH1	2	22	AGPAT5	5462	chr8:6590171:+	MCPH1	36611	chr8:6500515:+	ONLY_REF_SPLICE	YES	52	15	0.32	0.62	0.0211	0.2317	Cosmic{samples=2,mutations=2,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[64734],AGPAT5->1-acylglycerol-3-phosphate_O-acyltransferase_5,chr8:6565878-6617184:+,MCPH1->Oncogene{Bushman},chr8:6264113-6501144:+,microcephalin_1	HCC1187_BREAST	0.32	0.62	0.2528	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	7	0	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0737	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	1	1	0.0737	FALSE	231	217	16	283	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	7	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0737	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	1	1	0.0737	FALSE	231	205	14	283	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND6--MT-TE	7	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0737	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1187_BREAST	1	1	0.0737	FALSE	499	1288	110	792	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO2	6	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	55	12	0.13	0.4	0.0632	0.0211	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1187_BREAST	0.13	0.4	0.0843	FALSE	59	21	0	114	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND6--MT-TE	5	5	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0527	0.0527	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1187_BREAST	0.91	1	0.1054	FALSE	499	1288	110	792	0	FALSE	ACH-000111
HCC1187_BREAST	SEC22B--NOTCH2	2	17	SEC22B	1402	chr1:145096621:+	NOTCH2	48067	chr1:120465069:-	ONLY_REF_SPLICE	YES	146	152	0.12	0.11	0.0211	0.179	SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+,NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2	HCC1187_BREAST	0.11	0.12	0.2001	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	CALD1--BPGM	6	0	CALD1	3555	chr7:134464500:+	BPGM	39851	chr7:134346199:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0632	0	LOCAL_REARRANGEMENT:+:[64438],CALD1->caldesmon_1,chr7:134429003-134655479:+,BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+	HCC1187_BREAST	1	1	0.0632	TRUE	0	0	0	2	0	TRUE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-RNR2	6	0	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1187_BREAST	1	1	0.0632	FALSE	63	17	1	58	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-RNR2	6	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1187_BREAST	1	1	0.0632	FALSE	63	17	1	58	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	6	0	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	1	1	0.0632	FALSE	231	217	16	283	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND6--MT-TE	6	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1187_BREAST	1	1	0.0632	FALSE	499	1288	110	792	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO1	4	7	MT-ATP6	1558	chrM:9084:+	MT-CO1	5226	chrM:6448:+	INCL_NON_REF_SPLICE	YES	2558	12875	0	0	0.0421	0.0737	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1187_BREAST	0	0	0.1158	FALSE	183	104	9	328	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO1	5	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10261	14223	0	0	0.0527	0.0316	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1187_BREAST	0	0	0.0843	FALSE	183	104	9	328	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO2	5	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	NO	55	17	0.11	0.29	0.0527	0.0211	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1187_BREAST	0.11	0.29	0.0738	FALSE	59	21	0	114	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	5	1	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1788	37	0	0.14	0.0527	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	0	0.14	0.0632	FALSE	216	209	16	281	0	FALSE	ACH-000111
HCC1187_BREAST	KANSL1--ARL17B	2	12	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	33	9	0.3	0.61	0.0211	0.1264	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC1187_BREAST	0.3	0.61	0.1475	TRUE	105	90	7	93	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO1	4	4	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	10181	12800	0	0	0.0421	0.0421	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1187_BREAST	0	0	0.0842	FALSE	183	104	9	328	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO1	4	4	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	9709	12816	0	0	0.0421	0.0421	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1187_BREAST	0	0	0.0842	FALSE	183	104	9	328	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1003	chrM:10762:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	1	1	0.0527	FALSE	230	189	14	283	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ND4L	5	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1187_BREAST	1	1	0.0527	FALSE	344	821	44	306	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ND4L	5	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1187_BREAST	1	1	0.0527	FALSE	344	821	44	306	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO1	4	3	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	9260	0	0	1	0.0421	0.0316	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1187_BREAST	0	1	0.0737	FALSE	182	97	9	327	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	4	3	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	9898	0	0	1	0.0421	0.0316	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	0	1	0.0737	FALSE	231	217	16	283	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	4	3	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	10122	0	0	1	0.0421	0.0316	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	0	1	0.0737	FALSE	231	217	16	283	0	FALSE	ACH-000111
HCC1187_BREAST	ACTG1--NPLOC4	4	0	ACTG1	5248	chr17:79477953:-	NPLOC4	26756	chr17:79539114:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:-:[33040],ACTG1->actin_gamma_1,chr17:79476997-79490873:-,NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-	HCC1187_BREAST	1	1	0.0421	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	MAF--RP11-679B19.2	4	0	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	HCC1187_BREAST	1	1	0.0421	TRUE	48	25	3	38	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO1	3	4	MT-ATP6	1400	chrM:8926:+	MT-CO1	5381	chrM:6603:+	INCL_NON_REF_SPLICE	YES	10742	13676	0	0	0.0316	0.0421	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1187_BREAST	0	0	0.0737	FALSE	183	104	9	328	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO2	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1187_BREAST	1	1	0.0421	FALSE	59	21	0	114	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO2	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1187_BREAST	1	1	0.0421	FALSE	59	21	0	114	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO2	4	0	MT-ATP6	1134	chrM:8660:+	MT-CO2	4984	chrM:7888:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1187_BREAST	1	1	0.0421	FALSE	59	21	0	114	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1125	chrM:8651:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1187_BREAST	1	1	0.0421	FALSE	63	17	1	58	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND3--MT-ATP8	4	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	1	1	0.0421	FALSE	351	233	23	137	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	1	1	0.0421	FALSE	231	217	16	283	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	1	1	0.0421	FALSE	231	217	16	283	0	FALSE	ACH-000111
HCC1187_BREAST	AC012309.5--EXOSC10	2	7	AC012309.5	3187	chr19:37747716:+	EXOSC10	28666	chr1:11131030:-	ONLY_REF_SPLICE	YES	1	123	0.9	0.07	0.0211	0.0737	AC012309.5->chr19:37742814-37756437:+,EXOSC10->chr1:11126675-11159938:-,exosome_component_10	HCC1187_BREAST	0.07	0.9	0.0948	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	3	3	MT-ND4	2301	chrM:12060:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0316	0.0316	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	0.86	1	0.0632	FALSE	209	205	15	279	0	FALSE	ACH-000111
HCC1187_BREAST	CTCF--SCUBE2	3	2	CTCF	2435	chr16:67605167:+	SCUBE2	21222	chr11:9111376:-	ONLY_REF_SPLICE	YES	47	1	0.1	0.83	0.0316	0.0211	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,SCUBE2->chr11:9041071-9159661:-,signal_peptide,_CUB_domain_and_EGF_like_domain_containing_2	HCC1187_BREAST	0.1	0.83	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	9755	0	0	1	0.0316	0.0211	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	0	1	0.0527	FALSE	231	217	16	283	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	9698	0	0	1	0.0316	0.0211	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	0	1	0.0527	FALSE	231	217	16	283	0	FALSE	ACH-000111
HCC1187_BREAST	KIF2C--RNF220	3	1	KIF2C	4497	chr1:45213372:+	RNF220	39344	chr1:45110370:+	ONLY_REF_SPLICE	YES	271	185	0.01	0.02	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[88094],KIF2C->chr1:45205490-45233439:+,kinesin_family_member_2C,RNF220->Oncogene{Bushman},chr1:44870866-45117396:+,ring_finger_protein_220	HCC1187_BREAST	0.01	0.02	0.0421	FALSE	0	0	0	1	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO2	3	1	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	50	17	0.07	0.19	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1187_BREAST	0.07	0.19	0.0421	FALSE	59	21	0	114	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	3	1	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.67	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	0.67	1	0.0421	FALSE	209	205	15	279	0	FALSE	ACH-000111
HCC1187_BREAST	AKAP13--SLC28A1	3	0	AKAP13	4798	chr15:86028984:+	SLC28A1	85957	chr15:85504757:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,SLC28A1->chr15:85427885-85518876:+,solute_carrier_family_28_member_1	HCC1187_BREAST	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	CEBPB--RPS28	3	0	CEBPB	1228	chr20:48807603:+	RPS28	6180	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	CEBPB->CCAAT/enhancer_binding_protein_beta,Oncogene{Bushman},chr20:48807376-48809212:+,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC1187_BREAST	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	CTD-2337A12.1--CAST	3	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HCC1187_BREAST	1	1	0.0316	TRUE	347	1186	183	220	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1187_BREAST	1	1	0.0316	FALSE	183	104	9	328	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1121	chrM:8647:+	MT-CO1	4698	chrM:5920:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC1187_BREAST	1	1	0.0316	FALSE	182	97	9	327	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO2	3	0	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1187_BREAST	1	1	0.0316	FALSE	59	21	0	114	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-CO2	3	0	MT-ATP6	1141	chrM:8667:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC1187_BREAST	1	1	0.0316	FALSE	59	21	0	114	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1187_BREAST	1	1	0.0316	FALSE	63	17	1	58	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1187_BREAST	1	1	0.0316	FALSE	63	17	1	58	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1187_BREAST	1	1	0.0316	FALSE	63	17	1	58	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1143	chrM:8669:+	MT-RNR2	5305	chrM:2294:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1187_BREAST	1	1	0.0316	FALSE	63	17	1	58	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1122	chrM:8648:+	MT-RNR2	5410	chrM:2399:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1187_BREAST	1	1	0.0316	FALSE	63	17	1	58	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1110	chrM:8636:+	MT-RNR2	5247	chrM:2236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1187_BREAST	1	1	0.0316	FALSE	63	17	1	58	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	1	1	0.0316	FALSE	231	217	16	283	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	1	1	0.0316	FALSE	230	193	14	283	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1017	chrM:10776:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	1	1	0.0316	FALSE	230	190	14	283	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	1	1	0.0316	FALSE	231	204	14	283	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1187_BREAST	1	1	0.0316	FALSE	231	205	14	283	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND4--MT-ND4L	3	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1187_BREAST	1	1	0.0316	FALSE	344	821	44	306	0	FALSE	ACH-000111
HCC1187_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1187_BREAST	1	1	0.0316	FALSE	499	1288	110	792	0	FALSE	ACH-000111
HCC1187_BREAST	TIMM23B--LINC00843	3	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1187_BREAST	1	1	0.0316	TRUE	62	24	1	171	0	FALSE	ACH-000111
HCC1187_BREAST	ALDOA--SHISA9	1	7	ALDOA	7476	chr16:30077248:+	SHISA9	23825	chr16:13297251:+	ONLY_REF_SPLICE	YES	997	9	0.01	0.47	0.0105	0.0737	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,SHISA9->chr16:12995477-13334272:+,shisa_family_member_9	HCC1187_BREAST	0.01	0.47	0.0842	FALSE	0	0	0	1	0	FALSE	ACH-000111
HCC1187_BREAST	IL17RD--HESX1	1	5	IL17RD	3290	chr3:57199189:-	HESX1	28745	chr3:57234056:-	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0105	0.0527	LOCAL_REARRANGEMENT:-:[27610],IL17RD->chr3:57124010-57204334:-,interleukin_17_receptor_D,HESX1->HESX_homeobox_1,chr3:57231944-57260549:-	HCC1187_BREAST	0.75	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	PUM1--TRERF1	2	1	PUM1	4000	chr1:31532051:-	TRERF1	43666	chr6:42227461:-	ONLY_REF_SPLICE	YES	140	104	0.02	0.03	0.0211	0.0105	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	HCC1187_BREAST	0.02	0.03	0.0316	TRUE	0	0	0	1	0	FALSE	ACH-000111
HCC1187_BREAST	AKAP13--SLC28A1	2	0	AKAP13	4798	chr15:86028984:+	SLC28A1	82642	chr15:85486676:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,SLC28A1->chr15:85427885-85518876:+,solute_carrier_family_28_member_1	HCC1187_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	ALDOA--SHISA9	2	0	ALDOA	6054	chr16:30075826:+	SHISA9	21562	chr16:13010545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,SHISA9->chr16:12995477-13334272:+,shisa_family_member_9	HCC1187_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	CALD1--AKR1B15	2	0	CALD1	3555	chr7:134464500:+	AKR1B15	38290	chr7:134249350:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CALD1->caldesmon_1,chr7:134429003-134655479:+,AKR1B15->aldo-keto_reductase_family_1,_member_B15,chr7:134233888-134264627:+	HCC1187_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	CTAGE5--GEMIN2	2	0	CTAGE5	14871	chr14:39773585:+	GEMIN2	43661	chr14:39605644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CTAGE5->CTAGE_family_member_5,chr14:39734488-39856156:+,GEMIN2->chr14:39583427-39606177:+,gem_nuclear_organelle_associated_protein_2	HCC1187_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	ESPN--NPHP4	2	0	ESPN	2656	chr1:6488479:+	NPHP4	30673	chr1:5969273:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ESPN->chr1:6484848-6521430:+,espin,NPHP4->chr1:5922871-6052533:-,nephronophthisis_4	HCC1187_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	LINC01036--LINC01037	2	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HCC1187_BREAST	1	1	0.0211	FALSE	0	26	0	50	0	FALSE	ACH-000111
HCC1187_BREAST	NME7--CCDC181	2	0	NME7	1260	chr1:169336946:-	CCDC181	31241	chr1:169366629:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_REARRANGEMENT:-:[26903],NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-,CCDC181->chr1:169364108-169429907:-,coiled-coil_domain_containing_181	HCC1187_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	RARRES1--ATP5C1	2	0	RARRES1	3816	chr3:158428527:-	ATP5C1	13259	chr10:7839010:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RARRES1->Oncogene{Bushman},chr3:158414681-158450485:-,retinoic_acid_receptor_responder_1,ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+	HCC1187_BREAST	1	1	0.0211	TRUE	0	1	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	RP11-1L12.3--SLC5A12	2	0	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	HCC1187_BREAST	1	1	0.0211	TRUE	3	101	0	60	0	FALSE	ACH-000111
HCC1187_BREAST	TNRC18--FOXK1	2	0	TNRC18	3660	chr7:5460691:-	FOXK1	46988	chr7:4780469:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,FOXK1->chr7:4683388-4811074:+,forkhead_box_K1	HCC1187_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	VPS45--LURAP1L	2	0	VPS45	1639	chr1:150040007:+	LURAP1L	24618	chr9:12821385:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	VPS45->chr1:150039369-150117505:+,vacuolar_protein_sorting_45_homolog,LURAP1L->chr9:12775020-12822130:+,leucine_rich_adaptor_protein_1_like	HCC1187_BREAST	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000111
HCC1187_BREAST	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0105	0.0316	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1187_BREAST	0.8	1	0.0421	FALSE	93	270	15	244	0	FALSE	ACH-000111
HCC1187_BREAST	GBF1--NOLC1	1	2	GBF1	3423	chr10:104019873:+	NOLC1	36065	chr10:103919990:+	ONLY_REF_SPLICE	YES	37	127	0.07	0.02	0.0105	0.0211	LOCAL_REARRANGEMENT:+:[81662],GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1,NOLC1->chr10:103911933-103923627:+,nucleolar_and_coiled-body_phosphoprotein_1	HCC1187_BREAST	0.02	0.07	0.0316	TRUE	0	0	0	1	0	FALSE	ACH-000111
HCC1187_BREAST	GBF1--NOLC1	1	2	GBF1	3423	chr10:104019873:+	NOLC1	36284	chr10:103920209:+	ONLY_REF_SPLICE	YES	37	128	0.07	0.02	0.0105	0.0211	LOCAL_REARRANGEMENT:+:[81662],GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1,NOLC1->chr10:103911933-103923627:+,nucleolar_and_coiled-body_phosphoprotein_1	HCC1187_BREAST	0.02	0.07	0.0316	TRUE	0	0	0	1	0	FALSE	ACH-000111
HCC1187_BREAST	CALD1--BPGM	1	1	CALD1	6757	chr7:134528722:+	BPGM	39851	chr7:134346199:+	ONLY_REF_SPLICE	YES	1338	41	0	0.05	0.0105	0.0105	LOCAL_REARRANGEMENT:+:[64438],CALD1->caldesmon_1,chr7:134429003-134655479:+,BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+	HCC1187_BREAST	0	0.05	0.021	FALSE	0	0	0	2	0	FALSE	ACH-000111
HCC1187_BREAST	CALD1--BPGM	1	1	CALD1	9086	chr7:134552555:+	BPGM	39851	chr7:134346199:+	ONLY_REF_SPLICE	NO	1186	41	0	0.05	0.0105	0.0105	LOCAL_REARRANGEMENT:+:[64438],CALD1->caldesmon_1,chr7:134429003-134655479:+,BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+	HCC1187_BREAST	0	0.05	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000111
HCC1187_BREAST	HSP90AA1--GNAS	1	1	HSP90AA1	7819	chr14:102549371:-	GNAS	37151	chr20:57484217:+	ONLY_REF_SPLICE	YES	1721	2278	0	0	0.0105	0.0105	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HCC1187_BREAST	0	0	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000111
HCC1187_BREAST	PUM1--TRERF1	1	1	PUM1	26417	chr1:31413998:-	TRERF1	40263	chr6:42233535:-	ONLY_REF_SPLICE	YES	108	66	0.02	0.03	0.0105	0.0105	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	HCC1187_BREAST	0.02	0.03	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000111
HCC1187_BREAST	TCF12--ANXA2	1	1	TCF12	3439	chr15:57213296:+	ANXA2	59828	chr15:60656722:-	ONLY_REF_SPLICE	YES	125	1880	0.02	0	0.0105	0.0105	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,ANXA2->annexin_A2,chr15:60639333-60695082:-	HCC1187_BREAST	0	0.02	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000111
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2--IGH@	1036	306	BCL2	7748	chr18:60793496:-	IGH@	107384	chr14:106330059:-	INCL_NON_REF_SPLICE	YES	1	9	1	0.99	8.0103	2.366	chimerdb_pubmed{malignant hematological and immunopathological diseases,nonHodgkin's lymphoma,intramucosal carcinoma (IMC),Hodgkin's lymphoma,Follicular lymphoma (FL),Bcell tumors,nonHodgkin's lymphoma (NHL),prostatic adenocarcinoma, benign prostatic hyperplasia (BPH),follicular lymphoma,mucosaassociated lymphoid tissue lymphoma,follicular lymphomas,lymphoma/leukemia,leukemia and lymphoma,hematological malignancy},BCL2->ArcherDX_panel,B-cell_CLL/lymphoma_2,FoundationOne_panel,Oncogene{Bushman},chr18:60790579-60987361:-,IGH@->Oncogene{Bushman}	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	10.3763	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2--IGH@	593	330	BCL2	7750	chr18:60793494:-	IGH@	106985	chr14:106330458:-	INCL_NON_REF_SPLICE	YES	1	0	1	1	4.585	2.5515	chimerdb_pubmed{malignant hematological and immunopathological diseases,nonHodgkin's lymphoma,intramucosal carcinoma (IMC),Hodgkin's lymphoma,Follicular lymphoma (FL),Bcell tumors,nonHodgkin's lymphoma (NHL),prostatic adenocarcinoma, benign prostatic hyperplasia (BPH),follicular lymphoma,mucosaassociated lymphoid tissue lymphoma,follicular lymphomas,lymphoma/leukemia,leukemia and lymphoma,hematological malignancy},BCL2->ArcherDX_panel,B-cell_CLL/lymphoma_2,FoundationOne_panel,Oncogene{Bushman},chr18:60790579-60987361:-,IGH@->Oncogene{Bushman}	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	7.1365	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MCUR1--SRSF10	186	0	MCUR1	11892	chr6:13790712:-	SRSF10	27160	chr1:24296868:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4381	0	MCUR1->chr6:13786789-13814800:-,mitochondrial_calcium_uniporter_regulator_1,SRSF10->chr1:24291294-24307417:-,serine/arginine-rich_splicing_factor_10	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.4381	TRUE	1	0	0	3	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOL9--GNB1	169	64	NOL9	1429	chr1:6614167:-	GNB1	35590	chr1:1718492:-	ONLY_REF_SPLICE	YES	15	328	0.94	0.42	1.3067	0.4948	NOL9->chr1:6581407-6614595:-,nucleolar_protein_9,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.94	1.8015	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	173	40	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	1.3376	0.3093	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.6469	TRUE	508	994	45	981	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	144	8	PTMA	6593	chr2:232577226:+	NCL	15607	chr2:232326275:-	INCL_NON_REF_SPLICE	YES	6061	2193	0.02	0.06	1.1134	0.0619	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.06	1.1753	TRUE	0	0	0	5	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	97	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	204	12	0.34	0.9	0.75	0.0464	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.9	0.7964	TRUE	519	3926	326	965	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	91	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7036	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7036	TRUE	0	0	0	518	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	89	4	PTMA	6593	chr2:232577226:+	NCL	16478	chr2:232325404:-	INCL_NON_REF_SPLICE	YES	6061	1749	0.02	0.05	0.6881	0.0309	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.719	TRUE	0	0	0	5	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	85	17	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	65	25	0.61	0.8	0.6572	0.1314	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.8	0.7886	TRUE	181	1564	124	196	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF1--ROBO2	83	19	IKZF1	5418	chr7:50367353:+	ROBO2	31386	chr3:77530250:+	ONLY_REF_SPLICE	YES	133	0	0.43	1	0.6417	0.1469	IKZF1->ArcherDX_panel,FoundationOne_panel,IKAROS_family_zinc_finger_1,Oncogene{Bushman},chr7:50343720-50472799:+,ROBO2->chr3:75955846-77699115:+,roundabout_guidance_receptor_2	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.7886	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2--IGH@	4	331	BCL2	7750	chr18:60793494:-	IGH@	105793	chr14:106331650:-	INCL_NON_REF_SPLICE	YES	1	0	1	1	0.0309	2.5593	chimerdb_pubmed{malignant hematological and immunopathological diseases,nonHodgkin's lymphoma,intramucosal carcinoma (IMC),Hodgkin's lymphoma,Follicular lymphoma (FL),Bcell tumors,nonHodgkin's lymphoma (NHL),prostatic adenocarcinoma, benign prostatic hyperplasia (BPH),follicular lymphoma,mucosaassociated lymphoid tissue lymphoma,follicular lymphomas,lymphoma/leukemia,leukemia and lymphoma,hematological malignancy},BCL2->ArcherDX_panel,B-cell_CLL/lymphoma_2,FoundationOne_panel,Oncogene{Bushman},chr18:60790579-60987361:-,IGH@->Oncogene{Bushman}	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.5902	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2--IGH@	43	20	BCL2	6555	chr18:60794689:-	IGH@	130586	chr14:106111126:-	INCL_NON_REF_SPLICE	YES	227	223	0.22	0.22	0.3325	0.1546	chimerdb_pubmed{malignant hematological and immunopathological diseases,nonHodgkin's lymphoma,intramucosal carcinoma (IMC),Hodgkin's lymphoma,Follicular lymphoma (FL),Bcell tumors,nonHodgkin's lymphoma (NHL),prostatic adenocarcinoma, benign prostatic hyperplasia (BPH),follicular lymphoma,mucosaassociated lymphoid tissue lymphoma,follicular lymphomas,lymphoma/leukemia,leukemia and lymphoma,hematological malignancy},BCL2->ArcherDX_panel,B-cell_CLL/lymphoma_2,FoundationOne_panel,Oncogene{Bushman},chr18:60790579-60987361:-,IGH@->Oncogene{Bushman}	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.22	0.4871	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TFG--GPR128	32	19	TFG	5019	chr3:100438902:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	173	0	0.23	1	0.2474	0.1469	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.3943	TRUE	12	123	7	17	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAM16--NLRC3	36	0	PAM16	2160	chr16:4401233:-	NLRC3	14066	chr16:3617325:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2783	0	PAM16->chr16:4381550-4405608:-,presequence_translocase-associated_motor_16_homolog_(S._cerevisiae),NLRC3->NLR_family,_CARD_domain_containing_3,chr16:3589033-3627401:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2783	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--AC096579.7	10	78	IGKV5-2	1552	chr2:89197299:+	AC096579.7	6237	chr2:89161435:-	INCL_NON_REF_SPLICE	YES	0	260	1	0.25	0.0773	0.6031	GTEx_FI:{Pancreas=[count:2=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4],Kidney=[count:1=pct:7.1]},LOCAL_INVERSION:+:-:[31095],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,AC096579.7->chr2:89130700-89165653:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.6804	TRUE	3	11	0	2	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--AC096579.7	7	78	IGKV5-2	1554	chr2:89197301:+	AC096579.7	6238	chr2:89161434:-	INCL_NON_REF_SPLICE	YES	0	261	1	0.25	0.0541	0.6031	GTEx_FI:{Pancreas=[count:2=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4],Kidney=[count:1=pct:7.1]},LOCAL_INVERSION:+:-:[31095],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,AC096579.7->chr2:89130700-89165653:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.6572	TRUE	3	11	0	2	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	25	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1933	0.0309	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2242	FALSE	462	80	0	856	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--AC096579.7	6	78	IGKV5-2	1555	chr2:89197302:+	AC096579.7	6240	chr2:89161432:-	INCL_NON_REF_SPLICE	YES	0	293	1	0.22	0.0464	0.6031	GTEx_FI:{Pancreas=[count:2=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4],Kidney=[count:1=pct:7.1]},LOCAL_INVERSION:+:-:[31095],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,AC096579.7->chr2:89130700-89165653:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.6495	TRUE	3	11	0	2	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--AC096579.7	4	78	IGKV5-2	1555	chr2:89197302:+	AC096579.7	6238	chr2:89161434:-	INCL_NON_REF_SPLICE	YES	0	261	1	0.24	0.0309	0.6031	GTEx_FI:{Pancreas=[count:2=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4],Kidney=[count:1=pct:7.1]},LOCAL_INVERSION:+:-:[31095],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,AC096579.7->chr2:89130700-89165653:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.634	TRUE	3	11	0	2	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--AC096579.7	4	78	IGKV5-2	1552	chr2:89197299:+	AC096579.7	6238	chr2:89161434:-	INCL_NON_REF_SPLICE	YES	0	261	1	0.24	0.0309	0.6031	GTEx_FI:{Pancreas=[count:2=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4],Kidney=[count:1=pct:7.1]},LOCAL_INVERSION:+:-:[31095],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,AC096579.7->chr2:89130700-89165653:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.634	TRUE	3	11	0	2	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--AC096579.7	4	78	IGKV5-2	1554	chr2:89197301:+	AC096579.7	6239	chr2:89161433:-	INCL_NON_REF_SPLICE	YES	0	261	1	0.24	0.0309	0.6031	GTEx_FI:{Pancreas=[count:2=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4],Kidney=[count:1=pct:7.1]},LOCAL_INVERSION:+:-:[31095],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,AC096579.7->chr2:89130700-89165653:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.634	TRUE	3	11	0	2	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--AC096579.7	15	34	IGKV5-2	1465	chr2:89197212:+	AC096579.7	7275	chr2:89157196:-	INCL_NON_REF_SPLICE	YES	3	492	0.94	0.09	0.116	0.2629	GTEx_FI:{Pancreas=[count:2=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4],Kidney=[count:1=pct:7.1]},LOCAL_INVERSION:+:-:[31095],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,AC096579.7->chr2:89130700-89165653:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.94	0.3789	TRUE	4	44	2	2	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--AC096579.7	4	76	IGKV5-2	1553	chr2:89197300:+	AC096579.7	6243	chr2:89161429:-	INCL_NON_REF_SPLICE	YES	0	296	1	0.21	0.0309	0.5876	GTEx_FI:{Pancreas=[count:2=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4],Kidney=[count:1=pct:7.1]},LOCAL_INVERSION:+:-:[31095],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,AC096579.7->chr2:89130700-89165653:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.6185	TRUE	3	11	0	2	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--AC096579.7	3	78	IGKV5-2	1554	chr2:89197301:+	AC096579.7	6237	chr2:89161435:-	INCL_NON_REF_SPLICE	YES	0	260	1	0.24	0.0232	0.6031	GTEx_FI:{Pancreas=[count:2=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4],Kidney=[count:1=pct:7.1]},LOCAL_INVERSION:+:-:[31095],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,AC096579.7->chr2:89130700-89165653:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.6263	TRUE	3	11	0	2	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--AC096579.7	3	78	IGKV5-2	1551	chr2:89197298:+	AC096579.7	6235	chr2:89161437:-	INCL_NON_REF_SPLICE	YES	0	264	1	0.23	0.0232	0.6031	GTEx_FI:{Pancreas=[count:2=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4],Kidney=[count:1=pct:7.1]},LOCAL_INVERSION:+:-:[31095],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,AC096579.7->chr2:89130700-89165653:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.6263	TRUE	3	11	0	2	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL589743.1--RP11-536C10.17	20	2	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.1546	0.0155	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.1701	TRUE	0	33	0	45	33	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	20	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.1546	0.0155	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.1701	TRUE	0	42	0	133	42	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1237	0.0155	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1392	FALSE	499	1288	110	792	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2--IGH@	11	21	BCL2	6555	chr18:60794689:-	IGH@	121672	chr14:106209407:-	INCL_NON_REF_SPLICE	YES	227	89	0.12	0.26	0.0851	0.1624	chimerdb_pubmed{malignant hematological and immunopathological diseases,nonHodgkin's lymphoma,intramucosal carcinoma (IMC),Hodgkin's lymphoma,Follicular lymphoma (FL),Bcell tumors,nonHodgkin's lymphoma (NHL),prostatic adenocarcinoma, benign prostatic hyperplasia (BPH),follicular lymphoma,mucosaassociated lymphoid tissue lymphoma,follicular lymphomas,lymphoma/leukemia,leukemia and lymphoma,hematological malignancy},BCL2->ArcherDX_panel,B-cell_CLL/lymphoma_2,FoundationOne_panel,Oncogene{Bushman},chr18:60790579-60987361:-,IGH@->Oncogene{Bushman}	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.26	0.2475	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	13	9	PTMA	6593	chr2:232577226:+	NCL	15493	chr2:232326389:-	INCL_NON_REF_SPLICE	YES	6061	1983	0	0.01	0.1005	0.0696	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1701	TRUE	0	0	0	5	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	13	8	PTMA	6593	chr2:232577226:+	NCL	15508	chr2:232326374:-	INCL_NON_REF_SPLICE	YES	6061	1971	0	0.01	0.1005	0.0619	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1624	TRUE	0	0	0	5	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	13	5	PTMA	6593	chr2:232577226:+	NCL	16427	chr2:232325455:-	INCL_NON_REF_SPLICE	YES	6061	1784	0	0.01	0.1005	0.0387	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1392	TRUE	0	0	0	5	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	11	8	PTMA	6593	chr2:232577226:+	NCL	15589	chr2:232326293:-	INCL_NON_REF_SPLICE	YES	6061	1874	0	0.01	0.0851	0.0619	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.147	TRUE	0	0	0	5	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	12	2	PTMA	6054	chr2:232576687:+	NCL	16488	chr2:232325394:-	INCL_NON_REF_SPLICE	NO	6105	1728	0	0.01	0.0928	0.0155	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1083	FALSE	0	0	0	5	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	11	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0851	0.0077	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0928	FALSE	189	492	56	216	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	11	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	38	1465	0.24	0.01	0.0851	0.0077	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.24	0.0928	FALSE	0	0	0	434	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAM16--NLRC3	11	0	PAM16	2160	chr16:4401233:-	NLRC3	14005	chr16:3617386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0851	0	PAM16->chr16:4381550-4405608:-,presequence_translocase-associated_motor_16_homolog_(S._cerevisiae),NLRC3->NLR_family,_CARD_domain_containing_3,chr16:3589033-3627401:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0851	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0619	0.0619	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1238	FALSE	499	1288	110	792	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	10	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0773	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0773	TRUE	0	0	0	518	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	8	4	AC131097.3	2273	chr2:242824786:+	AC093642.5	12811	chr2:243056790:+	ONLY_REF_SPLICE	YES	9	14	0.57	0.46	0.0619	0.0309	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.57	0.0928	FALSE	2	37	1	16	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--AC096579.13	9	0	IGKV5-2	1552	chr2:89197299:+	AC096579.13	4555	chr2:89161074:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0696	0	GTEx_FI:{Blood=[count:3=pct:1.7],Lung=[count:3=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},LOCAL_INVERSION:+:-:[35673],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,AC096579.13->chr2:89109984-89161075:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0696	TRUE	10	41	2	1	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	7	3	PTMA	6054	chr2:232576687:+	NCL	15599	chr2:232326283:-	INCL_NON_REF_SPLICE	YES	6105	1997	0	0	0.0541	0.0232	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0773	FALSE	0	0	0	5	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	6	6	AC131097.3	2273	chr2:242824786:+	AC093642.5	11670	chr2:243037038:+	ONLY_REF_SPLICE	YES	9	1	0.57	0.92	0.0464	0.0464	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	0.92	0.0928	FALSE	3	20	2	16	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LRRK2--RP11-444D3.1	7	1	LRRK2	8661	chr12:40637483:+	RP11-444D3.1	65387	chr12:24521573:-	ONLY_REF_SPLICE	YES	9	0	0.47	1	0.0541	0.0077	LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2,RP11-444D3.1->chr12:24366190-24715524:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.0618	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	6	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	24	11	0.27	0.45	0.0464	0.0232	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.45	0.0696	TRUE	267	562	48	632	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	11	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0309	0.0851	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.116	FALSE	499	1288	110	792	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0464	FALSE	183	104	9	328	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	6	0	PTMA	6002	chr2:232576635:+	NCL	13906	chr2:232327976:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0464	TRUE	0	0	0	3	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0.0155	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0542	FALSE	499	1288	110	792	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	4	6	PTMA	6945	chr2:232577578:+	NCL	16349	chr2:232325533:-	INCL_NON_REF_SPLICE	YES	6509	1919	0	0.01	0.0309	0.0464	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0773	FALSE	0	0	0	5	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAM16--NLRC3	5	1	PAM16	2457	chr16:4400936:-	NLRC3	14066	chr16:3617325:-	ONLY_REF_SPLICE	YES	1	8	0.86	0.43	0.0387	0.0077	PAM16->chr16:4381550-4405608:-,presequence_translocase-associated_motor_16_homolog_(S._cerevisiae),NLRC3->NLR_family,_CARD_domain_containing_3,chr16:3589033-3627401:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.86	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	4	5	PTMA	6597	chr2:232577230:+	NCL	16401	chr2:232325481:-	INCL_NON_REF_SPLICE	NO	6699	1708	0	0.01	0.0309	0.0387	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0696	FALSE	0	0	0	5	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	5	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	TRUE	0	0	0	100	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	FALSE	183	104	9	328	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	4	4	PTMA	6055	chr2:232576688:+	NCL	13895	chr2:232327987:-	INCL_NON_REF_SPLICE	YES	6154	2166	0	0	0.0309	0.0309	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0618	FALSE	0	0	0	3	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF1--ROBO2	3	7	IKZF1	5418	chr7:50367353:+	ROBO2	32507	chr3:77542395:+	ONLY_REF_SPLICE	YES	133	9	0.07	0.53	0.0232	0.0541	IKZF1->ArcherDX_panel,FoundationOne_panel,IKAROS_family_zinc_finger_1,Oncogene{Bushman},chr7:50343720-50472799:+,ROBO2->chr3:75955846-77699115:+,roundabout_guidance_receptor_2	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.53	0.0773	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC139100.2--ADNP2	4	2	AC139100.2	3438	chr18:77920486:+	ADNP2	17573	chr18:77893495:+	ONLY_REF_SPLICE	YES	0	41	1	0.13	0.0309	0.0155	LOCAL_REARRANGEMENT:+:[401],AC139100.2->chr18:77905807-77936315:+,ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	3	6	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	54	25	0.14	0.26	0.0232	0.0464	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.26	0.0696	TRUE	105	90	7	93	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--IGKJ3	4	1	IGKV4-1	1756	chr2:89185668:+	IGKJ3	4758	chr2:89160770:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0.0077	GTEx_FI:{Lung=[count:12=pct:7.2],Blood_Vessel=[count:8=pct:2.2],Esophagus=[count:7=pct:1.7],Blood=[count:6=pct:3.4],Adipose_Tissue=[count:5=pct:1.7],Stomach=[count:5=pct:5.6],Spleen=[count:4=pct:3.6],Nerve=[count:4=pct:2.4],Breast=[count:4=pct:3.6],Whole_Blood=[count:4=pct:3.0],Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:3=pct:7.7],Colon=[count:2=pct:1.0],Vagina=[count:1=pct:1.8],Cervix_Uteri=[count:1=pct:12.5],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Testis=[count:1=pct:1.0],Fallopian_Tube=[count:1=pct:16.7],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6]},HGNC_GENEFAM,LOCAL_INVERSION:+:-:[24143],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,IGKJ3->chr2:89160733-89160770:-,immunoglobulin_kappa_joining_3	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	FALSE	61	416	23	1	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1223	chrM:8749:+	MT-CO1	5247	chrM:6469:+	INCL_NON_REF_SPLICE	YES	7410	9480	0	0	0.0309	0.0077	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0386	FALSE	183	104	9	328	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAM16--NLRC3	4	1	PAM16	2457	chr16:4400936:-	NLRC3	14005	chr16:3617386:-	ONLY_REF_SPLICE	YES	1	8	0.83	0.38	0.0309	0.0077	PAM16->chr16:4381550-4405608:-,presequence_translocase-associated_motor_16_homolog_(S._cerevisiae),NLRC3->NLR_family,_CARD_domain_containing_3,chr16:3589033-3627401:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.83	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--AC096579.13	4	0	IGKV5-2	1554	chr2:89197301:+	AC096579.13	4556	chr2:89161073:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	GTEx_FI:{Blood=[count:3=pct:1.7],Lung=[count:3=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},LOCAL_INVERSION:+:-:[35673],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,AC096579.13->chr2:89109984-89161075:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	TRUE	10	41	2	1	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	FALSE	183	104	9	328	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	FALSE	189	492	56	216	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0232	0.0309	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0541	FALSE	462	80	0	856	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	TRUE	0	0	0	434	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCBP2--MTND2P28	4	0	PCBP2	11835	chr12:53856343:+	MTND2P28	25766	chr1:565066:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	TRUE	0	0	0	9	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1070N10.6--MT-ND4L	4	0	RP11-1070N10.6	10764	chr14:96158557:+	MT-ND4L	14176	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	RP11-1070N10.6->chr14:96129593-96158967:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0309	FALSE	0	0	0	1	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	3	3	PTMA	6054	chr2:232576687:+	NCL	16470	chr2:232325412:-	INCL_NON_REF_SPLICE	YES	6105	1753	0	0	0.0232	0.0232	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0464	FALSE	0	0	0	5	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC139100.2--ADNP2	3	2	AC139100.2	1331	chr18:77906137:+	ADNP2	17573	chr18:77893495:+	ONLY_REF_SPLICE	YES	3	41	0.62	0.11	0.0232	0.0155	LOCAL_REARRANGEMENT:+:[401],AC139100.2->chr18:77905807-77936315:+,ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.62	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	3	1	PTMA	6045	chr2:232576678:+	NCL	13895	chr2:232327987:-	INCL_NON_REF_SPLICE	YES	6018	2166	0	0	0.0232	0.0077	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0309	FALSE	0	0	0	3	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--NCL	3	1	PTMA	6047	chr2:232576680:+	NCL	16424	chr2:232325458:-	INCL_NON_REF_SPLICE	NO	6037	1733	0	0	0.0232	0.0077	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0309	FALSE	0	0	0	5	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AFMID--FAM195B	3	0	AFMID	2467	chr17:76187141:+	FAM195B	17419	chr17:79782430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	AFMID->arylformamidase,chr17:76183398-76203782:+,FAM195B->chr17:79780287-79791178:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC91--RP11-444D3.1	3	0	CCDC91	21147	chr12:28544344:+	RP11-444D3.1	37259	chr12:24560500:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,RP11-444D3.1->chr12:24366190-24715524:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR3--TTC3	3	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	9	0	44	1	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV5-2--AC096579.13	3	0	IGKV5-2	1553	chr2:89197300:+	AC096579.13	4559	chr2:89161070:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx_FI:{Blood=[count:3=pct:1.7],Lung=[count:3=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},LOCAL_INVERSION:+:-:[35673],IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2,AC096579.13->chr2:89109984-89161075:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	10	41	2	1	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPZL1--RCSD1	3	0	MPZL1	2051	chr1:167691479:+	RCSD1	26114	chr1:167653137:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	LOCAL_REARRANGEMENT:+:[14943],MPZL1->chr1:167690429-167761156:+,myelin_protein_zero_like_1,RCSD1->RCSD_domain_containing_1,chr1:167599330-167675486:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1380	chrM:8906:+	MT-CO1	5953	chrM:7175:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0232	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	FALSE	183	104	9	328	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0232	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	FALSE	183	104	9	328	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-CO1	3	0	MT-CO3	1061	chrM:9267:+	MT-CO1	5329	chrM:6448:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0232	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1762],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	FALSE	4	27	0	4	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-CO1	3	0	MT-CO3	1205	chrM:9411:+	MT-CO1	5422	chrM:6541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0232	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1762],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	FALSE	4	27	0	4	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCBP2--MTND2P28	3	0	PCBP2	11799	chr12:53856307:+	MTND2P28	25731	chr1:565031:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0232	0	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0232	TRUE	0	0	0	9	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0155	0.0155	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.031	TRUE	62	24	1	171	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AKT1--PPP2R3B	2	0	AKT1	4154	chr14:105258935:-	PPP2R3B	24758	chrX:308428:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	AKT1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr14:105235686-105262088:-,v-akt_murine_thymoma_viral_oncogene_homolog_1,PPP2R3B->chrX:294698-347690:-,chrY:244698-297690:-,protein_phosphatase_2_regulatory_subunit_B'',_beta	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANAPC5--EZH2	2	0	ANAPC5	10099	chr12:121773336:-	EZH2	34298	chr7:148529842:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	ANAPC5->anaphase_promoting_complex_subunit_5,chr12:121746048-121837699:-,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP5G2--R3HDM2	2	0	ATP5G2	6916	chr12:54062932:-	R3HDM2	16142	chr12:57704246:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-,R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BTRC--NUP205	2	0	BTRC	1166	chr10:103113985:+	NUP205	64702	chr7:135330906:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	BTRC->Oncogene{Bushman},beta-transducin_repeat_containing_E3_ubiquitin_protein_ligase,chr10:103113820-103317078:+,NUP205->chr7:135242667-135333505:+,nucleoporin_205kDa	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCAR1--BTG3	2	0	CCAR1	19216	chr10:70532856:+	BTG3	31078	chr21:18981470:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	CCAR1->cell_division_cycle_and_apoptosis_regulator_1,chr10:70480769-70552134:+,BTG3->BTG_family_member_3,chr21:18965971-18985265:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC18--DNA2	2	0	CCDC18	1934	chr1:93646409:+	DNA2	53978	chr10:70176612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	CCDC18->chr1:93645476-93744287:+,coiled-coil_domain_containing_18,DNA2->DNA_replication_helicase/nuclease_2,chr10:70173821-70231879:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT2--NAP1L1	2	0	CNOT2	1487	chr12:70637260:+	NAP1L1	42311	chr12:76454059:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUL3--TTLL4	2	0	CUL3	1450	chr2:225449661:-	TTLL4	36972	chr2:219591992:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3,TTLL4->chr2:219575568-219620139:+,tubulin_tyrosine_ligase_like_4	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DUS1L--EEF1D	2	0	DUS1L	8107	chr17:80016657:-	EEF1D	23509	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	DUS1L->chr17:80015382-80023763:-,dihydrouridine_synthase_1_like,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF3K--MAP4K1	2	0	EIF3K	2332	chr19:39111075:+	MAP4K1	35764	chr19:39078457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	LOCAL_INVERSION:+:-:[213],EIF3K->chr19:39109735-39127595:+,eukaryotic_translation_initiation_factor_3_subunit_K,MAP4K1->chr19:39078281-39109522:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_1	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM19A2--COL9A3	2	0	FAM19A2	6794	chr12:62652544:-	COL9A3	51828	chr20:61464372:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2,COL9A3->chr20:61447596-61472511:+,collagen_type_IX_alpha_3	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--LARP4B	2	0	FAM208B	1338	chr10:5727138:+	LARP4B	41505	chr10:910210:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,LARP4B->La_ribonucleoprotein_domain_family_member_4B,chr10:855484-977564:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM213A--LARS	2	0	FAM213A	4555	chr10:82182264:+	LARS	35895	chr5:145509721:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	FAM213A->chr10:82167585-82192753:+,family_with_sequence_similarity_213_member_A,LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM65B--C6orf62	2	0	FAM65B	2283	chr6:24936066:-	C6orf62	40267	chr6:24716552:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	NEIGHBORS[76537],FAM65B->chr6:24797601-25042238:-,family_with_sequence_similarity_65_member_B,C6orf62->chr6:24705089-24721064:-,chromosome_6_open_reading_frame_62	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	FALSE	1	0	0	1	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0907--TAF12	2	0	KIAA0907	1768	chr1:155903424:-	TAF12	21182	chr1:28948677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	KIAA0907->KIAA0907,chr1:155882834-155904191:-,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00467--CHAF1A	2	0	LINC00467	1123	chr1:211556267:+	CHAF1A	14062	chr19:4418017:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	LINC00467->chr1:211556145-211605878:+,long_intergenic_non-protein_coding_RNA_467,CHAF1A->chr19:4402659-4445015:+,chromatin_assembly_factor_1_subunit_A	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LRPPRC--ATP6V0A1	2	0	LRPPRC	20296	chr2:44170826:-	ATP6V0A1	68482	chr17:40665879:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	LRPPRC->chr2:44113647-44223144:-,leucine_rich_pentatricopeptide_repeat_containing,ATP6V0A1->ATPase_H+_transporting_V0_subunit_a1,chr17:40610862-40674629:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MATR3--ACAP2	2	0	MATR3	3802	chr5:138614097:+	ACAP2	43777	chr3:195066046:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	MATR3->chr5:138609441-138667360:+,matrin_3,ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR17HG--SLC35B2	2	0	MIR17HG	2213	chr13:92002024:+	SLC35B2	10169	chr6:44224615:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	MIR17HG->chr13:92000074-92006833:+,miR-17-92a-1_cluster_host_gene,SLC35B2->chr6:44221833-44225291:-,solute_carrier_family_35_member_B2	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFA4--PHF14	2	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	19	32	3	60	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NEDD1--CDK17	2	0	NEDD1	1634	chr12:97301634:+	CDK17	24557	chr12:96728643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	NEDD1->chr12:97301001-97347129:+,neural_precursor_cell_expressed,_developmentally_down-regulated_1,CDK17->chr12:96672039-96794338:-,cyclin-dependent_kinase_17	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUCKS1--QSOX2	2	0	NUCKS1	1320	chr1:205719085:-	QSOX2	22081	chr9:139111010:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	NUCKS1->chr1:205681947-205719404:-,nuclear_casein_kinase_and_cyclin-dependent_kinase_substrate_1,QSOX2->chr9:139098179-139137687:-,quiescin_sulfhydryl_oxidase_2	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP155--PHF11	2	0	NUP155	1361	chr5:37370923:-	PHF11	49661	chr13:50095030:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	NUP155->chr5:37288239-37371283:-,nucleoporin_155kDa,PHF11->PHD_finger_protein_11,chr13:50069746-50103123:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RACGAP1--RAP1B	2	0	RACGAP1	3498	chr12:50419181:-	RAP1B	32235	chr12:69042479:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	RACGAP1->Rac_GTPase_activating_protein_1,chr12:50370706-50426919:-,RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RGL1--EDEM3	2	0	RGL1	1417	chr1:183605636:+	EDEM3	36867	chr1:184692990:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1,EDEM3->ER_degradation_enhancing_alpha-mannosidase_like_protein_3,chr1:184659365-184724047:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEL1L--TMEM260	2	0	SEL1L	1187	chr14:82000019:-	TMEM260	37893	chr14:57072288:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	SEL1L->Oncogene{Bushman},SEL1L_ERAD_E3_ligase_adaptor_subunit,chr14:81937893-82000205:-,TMEM260->chr14:56955072-57117324:+,transmembrane_protein_260	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMARCA5--ASUN	2	0	SMARCA5	20342	chr4:144469293:+	ASUN	33871	chr12:27081838:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	SMARCA5->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_5,chr4:144434616-144478639:+,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SOS2--NEMF	2	0	SOS2	20405	chr14:50611888:-	NEMF	49400	chr14:50281575:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	SOS2->SOS_Ras/Rho_guanine_nucleotide_exchange_factor_2,chr14:50583847-50698276:-,NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TACC3--LRR1	2	0	TACC3	3178	chr4:1725597:+	LRR1	21572	chr14:50069088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3,LRR1->chr14:50065415-50081390:+,leucine_rich_repeat_protein_1	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP10--HP1BP3	2	0	USP10	1134	chr16:84733717:+	HP1BP3	26177	chr1:21106404:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZDHHC14--ARID1B	2	0	ZDHHC14	2134	chr6:157803298:+	ARID1B	25905	chr6:157150361:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0	ZDHHC14->Oncogene{Bushman},chr6:157802165-158099178:+,zinc_finger_DHHC-type_containing_14,ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0155	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--PASK	1	2	AC131097.3	2273	chr2:242824786:+	PASK	13463	chr2:242082489:-	ONLY_REF_SPLICE	YES	9	5	0.25	0.38	0.0077	0.0155	AC131097.3->chr2:242823514-243020873:+,PASK->PAS_domain_containing_serine/threonine_kinase,chr2:242045514-242089679:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.38	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF144B--DEK	1	2	RNF144B	3753	chr6:18399930:+	DEK	27956	chr6:18226473:-	ONLY_REF_SPLICE	YES	74	1178	0.04	0	0.0077	0.0155	GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Colon_-_Sigmoid=1},RNF144B->chr6:18368779-18469105:+,ring_finger_protein_144B,DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0232	FALSE	0	0	0	2	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF144B--DEK	1	2	RNF144B	7058	chr6:18439975:+	DEK	20428	chr6:18258636:-	ONLY_REF_SPLICE	YES	52	645	0.05	0	0.0077	0.0155	GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Colon_-_Sigmoid=1},RNF144B->chr6:18368779-18469105:+,ring_finger_protein_144B,DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0232	FALSE	0	0	0	2	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASXL2--RAB10	1	1	ASXL2	6781	chr2:26022254:-	RAB10	32785	chr2:26321531:+	ONLY_REF_SPLICE	YES	48	163	0.04	0.01	0.0077	0.0077	GTEx_v2:{count=2;pct=0.02%;dist=Prostate=1,Heart_-_Left_Ventricle=1},ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,RAB10->RAB10,_member_RAS_oncogene_family,chr2:26256976-26360323:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0154	FALSE	0	0	0	1	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU2--RNASEH2B	1	1	DLEU2	2589	chr13:50655959:-	RNASEH2B	16192	chr13:51501543:+	ONLY_REF_SPLICE	YES	163	354	0.01	0.01	0.0077	0.0077	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),RNASEH2B->chr13:51483814-51544592:+,ribonuclease_H2_subunit_B	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0154	FALSE	0	1	0	4	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1A1--FARSB	1	1	EEF1A1	4369	chr6:74229606:-	FARSB	23727	chr2:223489494:-	ONLY_REF_SPLICE	YES	7448	168	0	0.01	0.0077	0.0077	EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1,FARSB->chr2:223435255-223521056:-,phenylalanyl-tRNA_synthetase_beta_subunit	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0154	FALSE	0	0	0	1	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--IGKJ3	1	1	IGKV4-1	1757	chr2:89185669:+	IGKJ3	4758	chr2:89160770:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0077	0.0077	GTEx_FI:{Lung=[count:12=pct:7.2],Blood_Vessel=[count:8=pct:2.2],Esophagus=[count:7=pct:1.7],Blood=[count:6=pct:3.4],Adipose_Tissue=[count:5=pct:1.7],Stomach=[count:5=pct:5.6],Spleen=[count:4=pct:3.6],Nerve=[count:4=pct:2.4],Breast=[count:4=pct:3.6],Whole_Blood=[count:4=pct:3.0],Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:3=pct:7.7],Colon=[count:2=pct:1.0],Vagina=[count:1=pct:1.8],Cervix_Uteri=[count:1=pct:12.5],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Testis=[count:1=pct:1.0],Fallopian_Tube=[count:1=pct:16.7],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6]},HGNC_GENEFAM,LOCAL_INVERSION:+:-:[24143],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,IGKJ3->chr2:89160733-89160770:-,immunoglobulin_kappa_joining_3	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0154	FALSE	61	416	23	1	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAEA--CTBP1	1	1	MAEA	1132	chr4:1283770:+	CTBP1	27745	chr4:1232125:-	ONLY_REF_SPLICE	YES	9	308	0.18	0.01	0.0077	0.0077	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.18	0.0154	FALSE	1	1	1	3	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAEA--CTBP1	1	1	MAEA	1132	chr4:1283770:+	CTBP1	34770	chr4:1222131:-	ONLY_REF_SPLICE	YES	9	364	0.18	0.01	0.0077	0.0077	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.18	0.0154	FALSE	0	0	0	2	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOL9--NADK	1	1	NOL9	1429	chr1:6614167:-	NADK	23766	chr1:1693474:-	ONLY_REF_SPLICE	YES	15	123	0.12	0.02	0.0077	0.0077	NOL9->chr1:6581407-6614595:-,nucleolar_protein_9,NADK->NAD_kinase,chr1:1682671-1711896:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.12	0.0154	TRUE	0	0	0	1	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAPOLA--VRK1	1	1	PAPOLA	2168	chr14:96968937:+	VRK1	34194	chr14:97299804:+	ONLY_REF_SPLICE	NO	113	10	0.02	0.17	0.0077	0.0077	PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,VRK1->Oncogene{Bushman},chr14:97263641-97398059:+,vaccinia_related_kinase_1	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.17	0.0154	TRUE	0	3	0	2	2	TRUE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAPOLA--VRK1	1	1	PAPOLA	19331	chr14:97010595:+	VRK1	34194	chr14:97299804:+	ONLY_REF_SPLICE	YES	204	10	0.01	0.17	0.0077	0.0077	PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,VRK1->Oncogene{Bushman},chr14:97263641-97398059:+,vaccinia_related_kinase_1	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.17	0.0154	FALSE	0	0	0	1	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RALGAPA2--XRN2	1	1	RALGAPA2	3278	chr20:20656880:-	XRN2	55011	chr20:21306917:+	ONLY_REF_SPLICE	YES	10	195	0.17	0.01	0.0077	0.0077	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood=[count:2=pct:1.1],Lung=[count:1=pct:0.6]},GTEx_v2:{count=7;pct=0.08%;dist=Thyroid=2,Skin_-_Sun_Exposed_(Lower_leg)=2,Whole_Blood=2,Breast_-_Mammary_Tissue=1},RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-,XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.17	0.0154	FALSE	0	0	0	2	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG5--TAF12	1	1	SNHG5	1780	chr6:86387672:-	TAF12	11723	chr1:28948677:-	ONLY_REF_SPLICE	YES	2008	9	0	0.18	0.0077	0.0077	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.18	0.0154	FALSE	0	0	0	1	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTN-AS1--MTX2	1	1	TTN-AS1	3454	chr2:179388363:+	MTX2	71117	chr2:177191553:+	ONLY_REF_SPLICE	YES	18	140	0.1	0.01	0.0077	0.0077	TTN-AS1->TTN_antisense_RNA_1,chr2:179385910-179639402:+,MTX2->chr2:177134123-177202753:+,metaxin_2	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.1	0.0154	FALSE	0	0	0	1	0	FALSE	ACH-000151
JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YARS2--DNM1L	1	1	YARS2	6201	chr12:32900010:-	DNM1L	28064	chr12:32890039:+	ONLY_REF_SPLICE	NO	4	234	0.33	0.01	0.0077	0.0077	NEIGHBORS_OVERLAP:-:+:[18062],YARS2->chr12:32880424-32908836:-,tyrosyl-tRNA_synthetase_2,DNM1L->chr12:32832134-32898486:+,dynamin_1-like	JM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.33	0.0154	FALSE	0	0	0	1	0	FALSE	ACH-000151
HS939T_SKIN	MICAL3--ATP6V1E1	85	31	MICAL3	2388	chr22:18484159:-	ATP6V1E1	68424	chr22:18083947:-	ONLY_REF_SPLICE	YES	59	486	0.66	0.19	0.9459	0.345	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,ATP6V1E1->ATPase_H+_transporting_V1_subunit_E1,chr22:18074902-18111584:-	HS939T_SKIN	0.19	0.66	1.2909	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	TIMM23B--LINC00843	62	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.69	0.1669	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS939T_SKIN	0.99	1	0.8569	TRUE	508	994	45	981	0	FALSE	ACH-000814
HS939T_SKIN	MICAL3--ATP6V1E1	43	25	MICAL3	1279	chr22:18507047:-	ATP6V1E1	68424	chr22:18083947:-	ONLY_REF_SPLICE	YES	44	486	0.61	0.12	0.4785	0.2782	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,ATP6V1E1->ATPase_H+_transporting_V1_subunit_E1,chr22:18074902-18111584:-	HS939T_SKIN	0.12	0.61	0.7567	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	MIPEPP3--ABHD12	41	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4563	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	HS939T_SKIN	1	1	0.4563	TRUE	64	202	9	44	0	FALSE	ACH-000814
HS939T_SKIN	TIMM23--RP11-464F9.1	36	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4006	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS939T_SKIN	1	1	0.4006	TRUE	519	3926	326	965	0	FALSE	ACH-000814
HS939T_SKIN	RP11-444D3.1--SOX5	28	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	17	1	0.67	0.3116	0.0668	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS939T_SKIN	0.67	1	0.3784	TRUE	477	1352	189	275	0	FALSE	ACH-000814
HS939T_SKIN	PLXDC1--TAF13	22	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2448	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS939T_SKIN	1	1	0.2448	TRUE	7	10	0	216	0	FALSE	ACH-000814
HS939T_SKIN	MT-TA--MT-TC	17	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1892	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS939T_SKIN	1	1	0.1892	FALSE	462	80	0	856	0	FALSE	ACH-000814
HS939T_SKIN	C15orf57--CBX3	15	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	21	39	0.51	0.36	0.1669	0.0779	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS939T_SKIN	0.36	0.51	0.2448	TRUE	267	562	48	632	0	FALSE	ACH-000814
HS939T_SKIN	CCDC149--LIMCH1	11	3	CCDC149	11870	chr4:24833128:-	LIMCH1	58747	chr4:41668578:+	ONLY_REF_SPLICE	YES	20	0	0.41	1	0.1224	0.0334	CCDC149->chr4:24807739-24981826:-,coiled-coil_domain_containing_149,LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+	HS939T_SKIN	0.41	1	0.1558	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	TNPO2--C19orf43	8	2	TNPO2	1763	chr19:12834063:-	C19orf43	22413	chr19:12842235:-	ONLY_REF_SPLICE	YES	65	475	0.13	0.02	0.089	0.0223	LOCAL_REARRANGEMENT:-:[6629],TNPO2->chr19:12810008-12834825:-,transportin_2,C19orf43->chr19:12841454-12845589:-,chromosome_19_open_reading_frame_43	HS939T_SKIN	0.02	0.13	0.1113	TRUE	0	0	0	1	0	FALSE	ACH-000814
HS939T_SKIN	CTD-2026G6.3--FGD5	8	1	CTD-2026G6.3	1022	chr3:75629129:-	FGD5	8837	chr3:14905635:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.089	0.0111	CTD-2026G6.3->chr3:75589200-75629150:-,FGD5->FYVE,_RhoGEF_and_PH_domain_containing_5,chr3:14860469-14975895:+	HS939T_SKIN	0.9	1	0.1001	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	RP11-444D3.1--SOX5	6	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	22	1	0.37	0.0668	0.0779	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS939T_SKIN	0.37	1	0.1447	TRUE	160	277	29	98	0	FALSE	ACH-000814
HS939T_SKIN	RP1-34H18.1--NAV3	6	4	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0668	0.0445	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HS939T_SKIN	1	1	0.1113	TRUE	254	575	65	124	0	FALSE	ACH-000814
HS939T_SKIN	CHSY3--HSPA8P4	6	3	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	26	0	0.26	1	0.0668	0.0334	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	HS939T_SKIN	0.26	1	0.1002	FALSE	89	26	1	44	0	FALSE	ACH-000814
HS939T_SKIN	RP11-141M1.3--STARD13	6	3	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	29	0.9	0.24	0.0668	0.0334	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HS939T_SKIN	0.24	0.9	0.1002	FALSE	49	120	16	70	0	FALSE	ACH-000814
HS939T_SKIN	RP11-141M1.3--STARD13	6	2	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	29	0.89	0.22	0.0668	0.0223	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HS939T_SKIN	0.22	0.89	0.0891	FALSE	141	264	50	91	0	FALSE	ACH-000814
HS939T_SKIN	HSPBP1--GRK5	6	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0668	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HS939T_SKIN	1	1	0.0668	TRUE	1	39	0	134	39	FALSE	ACH-000814
HS939T_SKIN	C15orf57--CBX3	4	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	19	40	0.34	0.2	0.0445	0.0668	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS939T_SKIN	0.2	0.34	0.1113	TRUE	267	562	48	632	0	FALSE	ACH-000814
HS939T_SKIN	FKBP9--BBS9	5	1	FKBP9	5454	chr7:33016111:+	BBS9	28188	chr7:33217090:+	ONLY_REF_SPLICE	YES	334	10	0.02	0.38	0.0556	0.0111	FKBP9->FK506_binding_protein_9,chr7:32997017-33046543:+,BBS9->Bardet-Biedl_syndrome_9,chr7:33168856-33645680:+	HS939T_SKIN	0.02	0.38	0.0667	TRUE	0	0	0	1	0	FALSE	ACH-000814
HS939T_SKIN	FTH1--ACTG1	4	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0445	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HS939T_SKIN	1	1	0.0445	TRUE	0	0	0	64	0	FALSE	ACH-000814
HS939T_SKIN	CHSY3--HSPA8P4	3	3	CHSY3	4532	chr5:129387864:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	26	0	0.19	1	0.0334	0.0334	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	HS939T_SKIN	0.19	1	0.0668	FALSE	0	0	0	2	0	FALSE	ACH-000814
HS939T_SKIN	MT-ND5--MT-ND6	3	3	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.86	0.0334	0.0334	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HS939T_SKIN	0.86	1	0.0668	FALSE	26	124	4	93	0	FALSE	ACH-000814
HS939T_SKIN	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.67	0.0334	0.0111	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS939T_SKIN	0.67	1	0.0445	TRUE	458	1351	185	561	0	FALSE	ACH-000814
HS939T_SKIN	RNLS--CRYL1	3	0	RNLS	7473	chr10:90074223:-	CRYL1	22163	chr13:20987526:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	RNLS->chr10:90033621-90344287:-,renalase,_FAD-dependent_amine_oxidase,CRYL1->chr13:20977806-21099996:-,crystallin_lambda_1	HS939T_SKIN	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	TUBB4B--FTH1	3	0	TUBB4B	1128	chr9:140135792:+	FTH1	6697	chr11:61734931:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	HS939T_SKIN	1	1	0.0334	TRUE	0	0	0	6	0	TRUE	ACH-000814
HS939T_SKIN	FARS2--KIF6	2	3	FARS2	8405	chr6:5545573:+	KIF6	18543	chr6:39659638:-	ONLY_REF_SPLICE	YES	44	3	0.1	0.62	0.0223	0.0334	FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,KIF6->chr6:39297766-39693181:-,kinesin_family_member_6	HS939T_SKIN	0.1	0.62	0.0557	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	GRB2--LA16c-321D4.2	2	1	GRB2	3352	chr17:73389632:-	LA16c-321D4.2	17234	chr16:2989981:-	ONLY_REF_SPLICE	YES	209	0	0.01	1	0.0223	0.0111	GRB2->Oncogene{Bushman},chr17:73314157-73401790:-,growth_factor_receptor_bound_protein_2,LA16c-321D4.2->chr16:2989715-3004277:-	HS939T_SKIN	0.01	1	0.0334	FALSE	0	0	0	1	0	FALSE	ACH-000814
HS939T_SKIN	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	86	1	0.03	0.0223	0.0111	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HS939T_SKIN	0.03	1	0.0334	FALSE	16	356	14	466	0	FALSE	ACH-000814
HS939T_SKIN	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	9	1	0.25	0.0223	0.0111	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS939T_SKIN	0.25	1	0.0334	TRUE	465	1949	224	605	0	FALSE	ACH-000814
HS939T_SKIN	CCDC122--ENOX1	2	0	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	HS939T_SKIN	1	1	0.0223	FALSE	39	52	2	34	0	FALSE	ACH-000814
HS939T_SKIN	INVS--MSANTD3	2	0	INVS	5175	chr9:102888831:+	MSANTD3	32397	chr9:103204188:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	INVS->chr9:102861538-103063282:+,inversin,MSANTD3->Myb/SANT_DNA_binding_domain_containing_3,chr9:103189438-103213511:+	HS939T_SKIN	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	KIAA0907--GARS	2	0	KIAA0907	1768	chr1:155903424:-	GARS	31459	chr7:30661009:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	KIAA0907->KIAA0907,chr1:155882834-155904191:-,GARS->chr7:30634297-30673649:+,glycyl-tRNA_synthetase	HS939T_SKIN	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	NDUFA4--PHF14	2	0	NDUFA4	1241	chr7:10979643:-	PHF14	24705	chr7:11091239:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HS939T_SKIN	1	1	0.0223	TRUE	0	2	0	3	0	TRUE	ACH-000814
HS939T_SKIN	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS939T_SKIN	1	1	0.0223	FALSE	515	4851	409	746	0	FALSE	ACH-000814
HS939T_SKIN	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HS939T_SKIN	1	1	0.0223	TRUE	53	396	64	110	0	FALSE	ACH-000814
HS939T_SKIN	SKP1--CDKL3	2	0	SKP1	1184	chr5:133512546:-	CDKL3	40359	chr5:133541822:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0223	0	LOCAL_REARRANGEMENT:-:[28576],SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-,CDKL3->chr5:133541305-133706738:-,cyclin_dependent_kinase_like_3	HS939T_SKIN	1	1	0.0223	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	FARS2--KIF6	1	2	FARS2	8405	chr6:5545573:+	KIF6	22576	chr6:39602734:-	ONLY_REF_SPLICE	YES	44	3	0.06	0.5	0.0111	0.0223	FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,KIF6->chr6:39297766-39693181:-,kinesin_family_member_6	HS939T_SKIN	0.06	0.5	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	CEP170--SDCCAG8	1	1	CEP170	1309	chr1:243418342:-	SDCCAG8	50643	chr1:243493842:+	ONLY_REF_SPLICE	NO	163	33	0.01	0.06	0.0111	0.0111	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Artery_-_Coronary=1,Nerve_-_Tibial=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:-:+:[670],CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	HS939T_SKIN	0.01	0.06	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000814
HS939T_SKIN	FARS2--KIF6	1	1	FARS2	8405	chr6:5545573:+	KIF6	25842	chr6:39564036:-	ONLY_REF_SPLICE	YES	44	2	0.04	0.5	0.0111	0.0111	FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,KIF6->chr6:39297766-39693181:-,kinesin_family_member_6	HS939T_SKIN	0.04	0.5	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000814
HS939T_SKIN	RANBP2--WDR33	1	1	RANBP2	1198	chr2:109336134:+	WDR33	37612	chr2:128528578:-	ONLY_REF_SPLICE	YES	76	65	0.03	0.03	0.0111	0.0111	RANBP2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RAN_binding_protein_2,chr2:109335937-109402267:+,WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-	HS939T_SKIN	0.03	0.03	0.0222	TRUE	0	0	0	1	0	FALSE	ACH-000814
HS939T_SKIN	RP1-34H18.1--RP11-781A6.1	1	1	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0111	0.0111	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	HS939T_SKIN	1	1	0.0222	TRUE	94	160	11	37	0	FALSE	ACH-000814
HS939T_SKIN	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	5599	chr13:34098375:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	29	0.4	0.06	0.0111	0.0111	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HS939T_SKIN	0.06	0.4	0.0222	FALSE	9	22	2	16	0	FALSE	ACH-000814
HS939T_SKIN	TNPO2--C19orf43	1	1	TNPO2	1239	chr19:12834587:-	C19orf43	22413	chr19:12842235:-	ONLY_REF_SPLICE	YES	64	475	0.03	0	0.0111	0.0111	LOCAL_REARRANGEMENT:-:[6629],TNPO2->chr19:12810008-12834825:-,transportin_2,C19orf43->chr19:12841454-12845589:-,chromosome_19_open_reading_frame_43	HS939T_SKIN	0	0.03	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000814
HS940T_FIBROBLAST	COL1A1--FN1	546	117	COL1A1	12966	chr17:48266809:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	15976	8561	0.04	0.07	5.6564	1.2121	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS940T_FIBROBLAST	0.04	0.07	6.8685	TRUE	0	0	0	17	0	FALSE	ACH-000135
HS940T_FIBROBLAST	FN1--COL1A1	383	14	FN1	36954	chr2:216243980:-	COL1A1	69586	chr17:48264124:-	INCL_NON_REF_SPLICE	YES	15507	13895	0.02	0.03	3.9678	0.145	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS940T_FIBROBLAST	0.02	0.03	4.1128	TRUE	0	0	0	13	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	260	86	COL1A1	12718	chr17:48267057:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	17460	2863	0.02	0.11	2.6935	0.8909	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0.02	0.11	3.5844	TRUE	0	0	0	4	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	224	23	COL1A1	13229	chr17:48266546:-	COL4A1	55990	chr13:110818641:-	INCL_NON_REF_SPLICE	YES	16136	3146	0.02	0.07	2.3206	0.2383	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0.02	0.07	2.5589	TRUE	0	0	0	3	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--FN1	161	17	COL1A1	5208	chr17:48274567:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	NO	12829	8561	0.01	0.02	1.6679	0.1761	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS940T_FIBROBLAST	0.01	0.02	1.844	FALSE	0	0	0	9	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	105	157	COL1A1	15399	chr17:48264376:-	COL4A1	28383	chr13:110861774:-	ONLY_REF_SPLICE	YES	15897	2782	0.02	0.09	1.0878	1.6265	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0.02	0.09	2.7143	TRUE	0	0	0	3	0	FALSE	ACH-000135
HS940T_FIBROBLAST	TIMM23B--LINC00843	122	40	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.2639	0.4144	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS940T_FIBROBLAST	0.99	1	1.6783	TRUE	508	994	45	981	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	82	71	COL1A1	13511	chr17:48266264:-	COL4A1	46773	chr13:110830438:-	INCL_NON_REF_SPLICE	YES	14840	2870	0.01	0.05	0.8495	0.7355	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0.01	0.05	1.585	TRUE	0	0	0	3	0	FALSE	ACH-000135
HS940T_FIBROBLAST	OR51S1--TP53I11	84	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8702	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HS940T_FIBROBLAST	1	1	0.8702	TRUE	402	216	10	229	0	FALSE	ACH-000135
HS940T_FIBROBLAST	TIMM23--RP11-464F9.1	64	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	241	4	0.23	0.95	0.663	0.0829	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS940T_FIBROBLAST	0.23	0.95	0.7459	TRUE	519	3926	326	965	0	FALSE	ACH-000135
HS940T_FIBROBLAST	FN1--COL1A1	43	7	FN1	19505	chr2:216271170:-	COL1A1	69586	chr17:48264124:-	INCL_NON_REF_SPLICE	YES	11693	13895	0	0	0.4455	0.0725	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS940T_FIBROBLAST	0	0	0.518	TRUE	0	0	0	4	0	FALSE	ACH-000135
HS940T_FIBROBLAST	EEF1DP3--FRY	39	22	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	2	11	0.97	0.85	0.404	0.2279	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS940T_FIBROBLAST	0.85	0.97	0.6319	FALSE	20	24	2	21	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	18	94	COL1A1	12984	chr17:48266791:-	COL4A1	28393	chr13:110861764:-	INCL_NON_REF_SPLICE	YES	14678	2644	0.01	0.04	0.1865	0.9738	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0.01	0.04	1.1603	TRUE	0	0	0	3	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	17	89	COL1A1	12975	chr17:48266800:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	15102	2863	0.01	0.04	0.1761	0.922	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0.01	0.04	1.0981	TRUE	0	0	0	4	0	FALSE	ACH-000135
HS940T_FIBROBLAST	CALM3--MYL6	39	0	CALM3	4231	chr19:47109114:+	MYL6	12975	chr12:56553371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.404	0	HGNC_GENEFAM,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	HS940T_FIBROBLAST	1	1	0.404	TRUE	0	0	0	8	0	TRUE	ACH-000135
HS940T_FIBROBLAST	COL1A1--FN1	7	109	COL1A1	12718	chr17:48267057:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	17599	8561	0.01	0.01	0.0725	1.1292	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS940T_FIBROBLAST	0.01	0.01	1.2017	TRUE	0	0	0	17	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	5	115	COL1A1	13422	chr17:48266353:-	COL4A1	35744	chr13:110850918:-	INCL_NON_REF_SPLICE	YES	15233	3119	0.01	0.04	0.0518	1.1914	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0.01	0.04	1.2432	TRUE	0	0	0	3	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MT-ND6--MT-TE	33	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3419	0.0207	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS940T_FIBROBLAST	1	1	0.3626	FALSE	499	1288	110	792	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	8	98	COL1A1	13032	chr17:48266743:-	COL4A1	32986	chr13:110855941:-	INCL_NON_REF_SPLICE	YES	14926	3072	0.01	0.03	0.0829	1.0153	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0.01	0.03	1.0982	TRUE	0	0	0	4	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	7	94	COL1A1	13004	chr17:48266771:-	COL4A1	32985	chr13:110855942:-	INCL_NON_REF_SPLICE	YES	14750	3111	0.01	0.03	0.0725	0.9738	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0.01	0.03	1.0463	TRUE	0	0	0	4	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MT-ND4--MT-ND4L	9	85	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.0932	0.8806	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS940T_FIBROBLAST	0.97	1	0.9738	FALSE	344	821	44	306	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	8	87	COL1A1	12735	chr17:48267040:-	COL4A1	32982	chr13:110855945:-	INCL_NON_REF_SPLICE	YES	17509	3122	0.01	0.03	0.0829	0.9013	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0.01	0.03	0.9842	TRUE	0	0	0	4	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	8	86	COL1A1	12921	chr17:48266854:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	NO	15050	2863	0.01	0.03	0.0829	0.8909	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0.01	0.03	0.9738	FALSE	0	0	0	4	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--FN1	3	105	COL1A1	12074	chr17:48267701:-	FN1	22244	chr2:216300777:-	INCL_NON_REF_SPLICE	YES	16678	0	0.01	1	0.0311	1.0878	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS940T_FIBROBLAST	0.01	1	1.1189	TRUE	0	0	0	17	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	6	88	COL1A1	12966	chr17:48266809:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	NO	15743	2863	0.01	0.03	0.0622	0.9117	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0.01	0.03	0.9739	FALSE	0	0	0	4	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--FN1	4	94	COL1A1	15650	chr17:48264125:-	FN1	58080	chr2:216243979:-	INCL_NON_REF_SPLICE	YES	13958	15539	0.01	0.01	0.0414	0.9738	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS940T_FIBROBLAST	0.01	0.01	1.0152	TRUE	0	0	0	18	0	FALSE	ACH-000135
HS940T_FIBROBLAST	PLXDC1--TAF13	26	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2694	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS940T_FIBROBLAST	1	1	0.2694	TRUE	7	10	0	216	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	14	43	COL1A1	7649	chr17:48272126:-	COL4A1	30761	chr13:110859037:-	INCL_NON_REF_SPLICE	YES	13368	2525	0	0.02	0.145	0.4455	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.02	0.5905	TRUE	0	0	0	2	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	4	83	COL1A1	14922	chr17:48264853:-	COL4A1	46633	chr13:110830578:-	INCL_NON_REF_SPLICE	NO	13873	3447	0.01	0.02	0.0414	0.8599	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0.01	0.02	0.9013	FALSE	0	0	0	1	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	17	28	COL1A1	6491	chr17:48273284:-	COL4A1	32982	chr13:110855945:-	INCL_NON_REF_SPLICE	YES	15683	3122	0	0.01	0.1761	0.2901	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.01	0.4662	TRUE	0	0	0	4	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	17	26	COL1A1	7649	chr17:48272126:-	COL4A1	45828	chr13:110831383:-	INCL_NON_REF_SPLICE	YES	13368	3235	0	0.01	0.1761	0.2694	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.01	0.4455	TRUE	0	0	0	4	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--FN1	4	78	COL1A1	14920	chr17:48264855:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	13807	17393	0.01	0	0.0414	0.8081	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS940T_FIBROBLAST	0	0.01	0.8495	TRUE	0	0	0	10	0	FALSE	ACH-000135
HS940T_FIBROBLAST	C15orf57--CBX3	20	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	43	14	0.43	0.7	0.2072	0.1347	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS940T_FIBROBLAST	0.43	0.7	0.3419	TRUE	267	562	48	632	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	6	69	COL1A1	15335	chr17:48264440:-	COL4A1	47897	chr13:110829314:-	INCL_NON_REF_SPLICE	YES	15387	2756	0	0.03	0.0622	0.7148	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.03	0.777	TRUE	0	0	0	1	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--FN1	6	68	COL1A1	13456	chr17:48266319:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	14416	17393	0.01	0	0.0622	0.7045	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS940T_FIBROBLAST	0	0.01	0.7667	TRUE	0	0	0	16	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MT-TA--MT-TC	21	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2176	0.0414	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS940T_FIBROBLAST	1	1	0.259	FALSE	462	80	0	856	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--FN1	3	74	COL1A1	13025	chr17:48266750:-	FN1	52427	chr2:216249634:-	INCL_NON_REF_SPLICE	YES	15158	14562	0.01	0.01	0.0311	0.7666	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS940T_FIBROBLAST	0.01	0.01	0.7977	TRUE	0	0	0	4	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--FN1	3	71	COL1A1	13184	chr17:48266591:-	FN1	57485	chr2:216244574:-	INCL_NON_REF_SPLICE	YES	17080	17708	0	0	0.0311	0.7355	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS940T_FIBROBLAST	0	0	0.7666	TRUE	0	0	0	2	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	6	52	COL1A1	12903	chr17:48266872:-	COL4A1	46633	chr13:110830578:-	INCL_NON_REF_SPLICE	NO	16180	3447	0	0.02	0.0622	0.5387	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.02	0.6009	FALSE	0	0	0	3	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--FN1	8	44	COL1A1	12367	chr17:48267408:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	16441	17393	0	0	0.0829	0.4558	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS940T_FIBROBLAST	0	0	0.5387	TRUE	0	0	0	13	0	FALSE	ACH-000135
HS940T_FIBROBLAST	CHSY3--HSPA8P4	17	7	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	65	0	0.27	1	0.1761	0.0725	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	HS940T_FIBROBLAST	0.27	1	0.2486	FALSE	89	26	1	44	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MT-ND6--MT-TE	15	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1554	0.1347	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS940T_FIBROBLAST	0.97	1	0.2901	FALSE	499	1288	110	792	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	9	34	COL1A1	8457	chr17:48271318:-	COL4A1	46681	chr13:110830530:-	INCL_NON_REF_SPLICE	YES	16011	2957	0	0.01	0.0932	0.3522	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.01	0.4454	TRUE	0	0	0	3	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	3	58	COL1A1	13884	chr17:48265891:-	COL4A1	48166	chr13:110829045:-	INCL_NON_REF_SPLICE	YES	15938	2958	0	0.02	0.0311	0.6009	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.02	0.632	TRUE	0	0	0	1	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	4	53	COL1A1	8463	chr17:48271312:-	COL4A1	35744	chr13:110850918:-	INCL_NON_REF_SPLICE	YES	16006	3119	0	0.02	0.0414	0.5491	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.02	0.5905	TRUE	0	0	0	2	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	1	65	COL1A1	9420	chr17:48270355:-	COL4A1	31787	chr13:110857885:-	ONLY_REF_SPLICE	NO	16481	2809	0	0.02	0.0104	0.6734	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.02	0.6838	TRUE	0	0	0	2	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	6	45	COL1A1	9394	chr17:48270381:-	COL4A1	43249	chr13:110835435:-	INCL_NON_REF_SPLICE	YES	16642	3259	0	0.02	0.0622	0.4662	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.02	0.5284	TRUE	0	0	0	1	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	5	46	COL1A1	7982	chr17:48271793:-	COL4A1	32989	chr13:110855938:-	INCL_NON_REF_SPLICE	YES	15161	3030	0	0.02	0.0518	0.4765	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.02	0.5283	TRUE	0	0	0	4	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	3	53	COL1A1	9931	chr17:48269844:-	COL4A1	42025	chr13:110838767:-	INCL_NON_REF_SPLICE	YES	13782	3653	0	0.02	0.0311	0.5491	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.02	0.5802	TRUE	0	0	0	1	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--FN1	3	53	COL1A1	12982	chr17:48266793:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	15072	17393	0	0	0.0311	0.5491	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS940T_FIBROBLAST	0	0	0.5802	TRUE	0	0	0	17	0	FALSE	ACH-000135
HS940T_FIBROBLAST	RP11-680G10.1--GSE1	15	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	8	1	0.71	0.1554	0.0518	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS940T_FIBROBLAST	0.71	1	0.2072	TRUE	465	1949	224	605	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	9	26	COL1A1	6456	chr17:48273319:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	15215	2863	0	0.01	0.0932	0.2694	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.01	0.3626	TRUE	0	0	0	4	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	3	48	COL1A1	12052	chr17:48267723:-	COL4A1	43327	chr13:110835357:-	INCL_NON_REF_SPLICE	NO	16687	3144	0	0.02	0.0311	0.4973	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.02	0.5284	FALSE	0	0	0	2	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	5	34	COL1A1	8463	chr17:48271312:-	COL4A1	46702	chr13:110830509:-	INCL_NON_REF_SPLICE	YES	16006	2998	0	0.01	0.0518	0.3522	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.01	0.404	TRUE	0	0	0	3	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	4	36	COL1A1	8409	chr17:48271366:-	COL4A1	43100	chr13:110835584:-	INCL_NON_REF_SPLICE	YES	15949	3811	0	0.01	0.0414	0.3729	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.01	0.4143	TRUE	0	0	0	1	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MT-ND5--MT-ND4	13	0	MT-ND5	2794	chrM:14130:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1347	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HS940T_FIBROBLAST	1	1	0.1347	FALSE	47	27	1	24	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	4	33	COL1A1	7098	chr17:48272677:-	COL4A1	35704	chr13:110850958:-	INCL_NON_REF_SPLICE	NO	15792	2577	0	0.01	0.0414	0.3419	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.01	0.3833	FALSE	0	0	0	3	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	9	12	COL1A1	9774	chr17:48270001:-	COL4A1	54027	chr13:110822002:-	INCL_NON_REF_SPLICE	NO	15540	3030	0	0.01	0.0932	0.1243	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.01	0.2175	FALSE	0	0	0	3	0	FALSE	ACH-000135
HS940T_FIBROBLAST	IGFBP7--MT-ND4L	12	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1243	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS940T_FIBROBLAST	1	1	0.1243	FALSE	1	0	0	30	0	FALSE	ACH-000135
HS940T_FIBROBLAST	RP11-680G10.1--GSE1	10	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.1036	0.0725	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS940T_FIBROBLAST	0.94	1	0.1761	TRUE	458	1351	185	561	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	8	14	COL1A1	5789	chr17:48273986:-	COL4A1	43061	chr13:110835623:-	INCL_NON_REF_SPLICE	NO	12770	4089	0	0.01	0.0829	0.145	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.01	0.2279	FALSE	0	0	0	3	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--FN1	3	34	COL1A1	6826	chr17:48272949:-	FN1	22519	chr2:216300502:-	INCL_NON_REF_SPLICE	YES	14415	7984	0	0	0.0311	0.3522	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS940T_FIBROBLAST	0	0	0.3833	TRUE	0	0	0	13	0	FALSE	ACH-000135
HS940T_FIBROBLAST	C15orf57--CBX3	8	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	43	14	0.32	0.59	0.0829	0.1243	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS940T_FIBROBLAST	0.32	0.59	0.2072	TRUE	267	562	48	632	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	3	27	COL1A1	7691	chr17:48272084:-	COL4A1	45561	chr13:110831650:-	INCL_NON_REF_SPLICE	NO	13946	2822	0	0.01	0.0311	0.2797	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.01	0.3108	FALSE	0	0	0	4	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MT-ND6--MT-TE	9	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0932	0.0207	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS940T_FIBROBLAST	1	1	0.1139	FALSE	499	1288	110	792	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--FN1	3	25	COL1A1	7831	chr17:48271944:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	14122	17393	0	0	0.0311	0.259	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS940T_FIBROBLAST	0	0	0.2901	TRUE	0	0	0	14	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--SPARC	7	8	COL1A1	6794	chr17:48272981:-	SPARC	29508	chr5:151051220:-	INCL_NON_REF_SPLICE	YES	13957	8725	0	0	0.0725	0.0829	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS940T_FIBROBLAST	0	0	0.1554	TRUE	0	0	0	2	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MT-ND6--MT-TE	3	23	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0311	0.2383	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS940T_FIBROBLAST	1	1	0.2694	FALSE	499	1288	110	792	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--SPARC	5	13	COL1A1	12702	chr17:48267073:-	SPARC	32920	chr5:151046014:-	INCL_NON_REF_SPLICE	YES	17486	10769	0	0	0.0518	0.1347	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS940T_FIBROBLAST	0	0	0.1865	TRUE	0	0	0	2	0	FALSE	ACH-000135
HS940T_FIBROBLAST	FN1--COL1A1	3	21	FN1	42923	chr2:216236709:-	COL1A1	67398	chr17:48266312:-	INCL_NON_REF_SPLICE	YES	18583	14408	0	0	0.0311	0.2176	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS940T_FIBROBLAST	0	0	0.2487	TRUE	0	0	0	2	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MT-ATP6--MT-CO2	8	1	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	24	2	0.27	0.82	0.0829	0.0104	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS940T_FIBROBLAST	0.27	0.82	0.0933	FALSE	59	21	0	114	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	3	20	COL1A1	6100	chr17:48273675:-	COL4A1	43060	chr13:110835624:-	INCL_NON_REF_SPLICE	NO	14204	4102	0	0.01	0.0311	0.2072	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.01	0.2383	FALSE	0	0	0	3	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--SPARC	4	13	COL1A1	7683	chr17:48272092:-	SPARC	29579	chr5:151051149:-	INCL_NON_REF_SPLICE	YES	13446	9663	0	0	0.0414	0.1347	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS940T_FIBROBLAST	0	0	0.1761	TRUE	0	0	0	2	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MT-ND4--MT-ND4L	3	17	MT-ND4	2179	chrM:11938:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	5434	0	0	1	0.0311	0.1761	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS940T_FIBROBLAST	0	1	0.2072	FALSE	310	769	40	302	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--FN1	3	16	COL1A1	7128	chr17:48272647:-	FN1	61587	chr2:216239972:-	INCL_NON_REF_SPLICE	YES	16249	17856	0	0	0.0311	0.1658	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS940T_FIBROBLAST	0	0	0.1969	TRUE	0	0	0	15	0	FALSE	ACH-000135
HS940T_FIBROBLAST	PRR16--CTD-2334D19.1	5	6	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	67	0	0.14	1	0.0518	0.0622	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS940T_FIBROBLAST	0.14	1	0.114	FALSE	21	45	1	60	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	3	12	COL1A1	4656	chr17:48275119:-	COL4A1	28393	chr13:110861764:-	INCL_NON_REF_SPLICE	YES	12069	2644	0	0.01	0.0311	0.1243	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0.01	0.1554	TRUE	0	0	0	1	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--SPARC	4	8	COL1A1	6074	chr17:48273701:-	SPARC	26916	chr5:151054207:-	INCL_NON_REF_SPLICE	YES	12520	6993	0	0	0.0414	0.0829	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS940T_FIBROBLAST	0	0	0.1243	TRUE	0	0	0	1	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--SPARC	6	0	COL1A1	2564	chr17:48277211:-	SPARC	29508	chr5:151051220:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0622	0	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS940T_FIBROBLAST	1	1	0.0622	TRUE	0	0	0	3	0	TRUE	ACH-000135
HS940T_FIBROBLAST	CTGF--ACTB	6	0	CTGF	1136	chr6:132272378:-	ACTB	10623	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0622	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS940T_FIBROBLAST	1	1	0.0622	TRUE	0	0	0	9	0	TRUE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	3	11	COL1A1	12351	chr17:48267424:-	COL4A1	56017	chr13:110818614:-	INCL_NON_REF_SPLICE	YES	16415	3103	0	0	0.0311	0.114	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0	0.1451	TRUE	0	0	0	3	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MT-ND4--MT-ND4L	4	6	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	52	0	0.16	1	0.0414	0.0622	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS940T_FIBROBLAST	0.16	1	0.1036	FALSE	344	827	44	306	0	FALSE	ACH-000135
HS940T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0518	0.0207	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS940T_FIBROBLAST	1	1	0.0725	FALSE	515	4851	409	746	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--COL4A1	3	9	COL1A1	5762	chr17:48274013:-	COL4A1	46933	chr13:110830278:-	INCL_NON_REF_SPLICE	NO	12218	3166	0	0	0.0311	0.0932	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS940T_FIBROBLAST	0	0	0.1243	FALSE	0	0	0	2	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MT-ATP6--MT-CO1	5	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	6751	18051	0	0	0.0518	0.0104	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS940T_FIBROBLAST	0	0	0.0622	FALSE	183	104	9	328	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MT-ATP6--MT-CO2	5	1	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	19	1	0.24	0.86	0.0518	0.0104	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS940T_FIBROBLAST	0.24	0.86	0.0622	FALSE	59	21	0	114	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MYL9--MT-CO3	5	1	MYL9	4577	chr20:35177723:+	MT-CO3	8119	chrM:9243:+	INCL_NON_REF_SPLICE	YES	986	0	0.01	1	0.0518	0.0104	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HS940T_FIBROBLAST	0.01	1	0.0622	FALSE	29	0	0	10	0	FALSE	ACH-000135
HS940T_FIBROBLAST	CTGF--MT-CO2	5	0	CTGF	1250	chr6:132272264:-	MT-CO2	7425	chrM:7812:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	0	CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS940T_FIBROBLAST	1	1	0.0518	FALSE	0	0	0	1	0	FALSE	ACH-000135
HS940T_FIBROBLAST	FN1--COL1A1	3	8	FN1	17566	chr2:216273109:-	COL1A1	67167	chr17:48266543:-	INCL_NON_REF_SPLICE	YES	10618	16008	0	0	0.0311	0.0829	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS940T_FIBROBLAST	0	0	0.114	TRUE	0	0	0	4	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MT-ATP6--MT-CO2	5	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS940T_FIBROBLAST	1	1	0.0518	FALSE	59	21	0	114	0	FALSE	ACH-000135
HS940T_FIBROBLAST	XXbac-BPG252P9.9--TUBBP2	5	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HS940T_FIBROBLAST	1	1	0.0518	TRUE	0	1	0	48	1	FALSE	ACH-000135
HS940T_FIBROBLAST	EEF1DP3--FRY	3	7	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	13	11	0.43	0.48	0.0311	0.0725	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS940T_FIBROBLAST	0.43	0.48	0.1036	FALSE	18	26	2	21	0	FALSE	ACH-000135
HS940T_FIBROBLAST	PRR16--CTD-2334D19.1	4	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	143	0	0.05	1	0.0414	0.0311	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS940T_FIBROBLAST	0.05	1	0.0725	FALSE	56	216	12	147	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MT-ATP6--MT-CO2	3	5	MT-ATP6	1567	chrM:9093:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	2	1	0.8	0.89	0.0311	0.0518	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS940T_FIBROBLAST	0.8	0.89	0.0829	FALSE	59	21	0	114	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--FN1	3	4	COL1A1	7648	chr17:48272127:-	FN1	71454	chr2:216226769:-	INCL_NON_REF_SPLICE	YES	13256	17722	0	0	0.0311	0.0414	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS940T_FIBROBLAST	0	0	0.0725	FALSE	0	0	0	2	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS940T_FIBROBLAST	1	1	0.0414	FALSE	499	1288	110	792	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL1A1--SPARC	3	3	COL1A1	8463	chr17:48271312:-	SPARC	34782	chr5:151043027:-	INCL_NON_REF_SPLICE	YES	16019	10825	0	0	0.0311	0.0311	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.11%,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	HS940T_FIBROBLAST	0	0	0.0622	FALSE	0	0	0	1	0	FALSE	ACH-000135
HS940T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0311	0.0207	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS940T_FIBROBLAST	1	1	0.0518	FALSE	407	2205	196	549	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MT-ATP6--MT-CO1	3	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	6797	17669	0	0	0.0311	0.0104	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS940T_FIBROBLAST	0	0	0.0415	FALSE	183	104	9	328	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MT-ATP6--MT-CO2	3	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	11	1	0.27	0.8	0.0311	0.0104	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS940T_FIBROBLAST	0.27	0.8	0.0415	FALSE	59	21	0	114	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MYL9--MT-CO3	3	1	MYL9	4581	chr20:35177727:+	MT-CO3	8123	chrM:9247:+	INCL_NON_REF_SPLICE	YES	985	0	0	1	0.0311	0.0104	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HS940T_FIBROBLAST	0	1	0.0415	FALSE	29	0	0	10	0	FALSE	ACH-000135
HS940T_FIBROBLAST	MAEA--CTBP1	3	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0311	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HS940T_FIBROBLAST	1	1	0.0311	TRUE	3	14	2	43	0	FALSE	ACH-000135
HS940T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0.0207	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS940T_FIBROBLAST	1	1	0.0414	FALSE	467	2173	244	435	0	FALSE	ACH-000135
HS940T_FIBROBLAST	TPM2--ACTG1	2	2	TPM2	4592	chr9:35685061:-	ACTG1	14213	chr17:79478652:-	ONLY_REF_SPLICE	YES	3065	8989	0	0	0.0207	0.0207	GTEx&tcga_normals:114/3694=3.09%,GTEx:2.09%,GTEx_FI:{Blood_Vessel=[count:158=pct:42.8],Esophagus=[count:132=pct:32.6],Colon=[count:59=pct:30.9],Heart=[count:15=pct:6.0],Prostate=[count:9=pct:14.8],Stomach=[count:8=pct:9.0],Adipose_Tissue=[count:6=pct:2.0],Uterus=[count:4=pct:9.3],Small_Intestine=[count:3=pct:5.5],Vagina=[count:3=pct:5.5],Bladder=[count:2=pct:22.2],Lung=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Breast=[count:1=pct:0.9],_not_provided_=[count:1=pct:100.0],Fallopian_Tube=[count:1=pct:16.7],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=484;pct=5.59%;dist=Artery_-_Tibial=130,Esophagus_-_Muscularis=91,Esophagus_-_Gastroesophageal_Junction=56,Colon_-_Sigmoid=48,Artery_-_Coronary=29,Artery_-_Aorta=28,Colon_-_Transverse=23,Stomach=15,Adipose_-_Subcutaneous=13,Prostate=10,Uterus=8,Esophagus_-_Mucosa=6,Small_Intestine_-_Terminal_Ileum=5,Heart_-_Left_Ventricle=5,Heart_-_Atrial_Appendage=5,Breast_-_Mammary_Tissue=2,Vagina=2,Bladder=2,Ovary=1,Lung=1,Adipose_-_Visceral_(Omentum)=1,Muscle_-_Skeletal=1,Cells_-_Transformed_fibroblasts=1,Fallopian_Tube=1},TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HS940T_FIBROBLAST	0	0	0.0414	FALSE	237	57	25	9	0	FALSE	ACH-000135
HS940T_FIBROBLAST	COL4A2--COL6A2	2	0	COL4A2	15519	chr13:111092180:+	COL6A2	57966	chr21:47537314:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},HGNC_GENEFAM,PROTCLUST,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS940T_FIBROBLAST	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000135
HS940T_FIBROBLAST	CPQ--SDC2	2	0	CPQ	1176	chr8:97657630:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	HS940T_FIBROBLAST	1	1	0.0207	TRUE	1	37	5	9	9	TRUE	ACH-000135
HS940T_FIBROBLAST	PRR16--CTD-2334D19.1	1	3	PRR16	6887	chr5:119954260:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	162	0	0.02	1	0.0104	0.0311	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS940T_FIBROBLAST	0.02	1	0.0415	FALSE	0	2	0	14	0	FALSE	ACH-000135
HS940T_FIBROBLAST	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	26	1	0.1	0.0104	0.0207	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS940T_FIBROBLAST	0.1	1	0.0311	TRUE	64	13	3	59	0	FALSE	ACH-000135
HS940T_FIBROBLAST	IFNGR1--PEX7	1	1	IFNGR1	1207	chr6:137540380:-	PEX7	19590	chr6:137187765:+	ONLY_REF_SPLICE	NO	122	35	0.02	0.05	0.0104	0.0104	GTEx_FI:{Skin=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Substantia_nigra=1},IFNGR1->chr6:137518621-137540586:-,interferon_gamma_receptor_1,PEX7->chr6:137143717-137235075:+,peroxisomal_biogenesis_factor_7	HS940T_FIBROBLAST	0.02	0.05	0.0208	TRUE	1	1	0	1	0	FALSE	ACH-000135
HS940T_FIBROBLAST	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0104	0.0104	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HS940T_FIBROBLAST	1	1	0.0208	FALSE	416	2512	207	587	0	FALSE	ACH-000135
HS940T_FIBROBLAST	RP11-358H9.1--RP11-400N13.1	1	1	RP11-358H9.1	2827	chr1:222626082:-	RP11-400N13.1	9106	chr1:222262907:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0104	0.0104	NEIGHBORS[65306],RP11-358H9.1->chr1:222626082-222628047:-,RP11-400N13.1->chr1:222262511-222560776:-	HS940T_FIBROBLAST	1	1	0.0208	FALSE	0	22	0	9	0	FALSE	ACH-000135
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	216	221	MLLT10	2720	chr10:21827841:+	PICALM	61585	chr11:85670103:-	ONLY_REF_SPLICE	YES	54	122	0.89	0.78	2.5615	2.6208	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.89	5.1823	TRUE	0	0	0	2	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUX1--MARK3	127	12	CUX1	1415	chr7:101459373:+	MARK3	67786	chr14:103923479:+	ONLY_REF_SPLICE	YES	19	138	0.88	0.5	1.5061	0.1423	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.88	1.6484	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	21	232	MLLT10	7159	chr10:21846753:+	PICALM	61585	chr11:85670103:-	ONLY_REF_SPLICE	YES	1	122	1	0.67	0.249	2.7513	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	3.0003	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	60	41	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7115	0.4862	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1977	TRUE	508	994	45	981	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAT1--TRMT11	55	39	HAT1	9507	chr2:172823470:+	TRMT11	25344	chr6:126329538:+	ONLY_REF_SPLICE	YES	1330	82	0.07	0.53	0.6522	0.4625	{Klijn_CCL:Lymphoid=1},HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1,TRMT11->chr6:126307576-126360422:+,tRNA_methyltransferase_11_homolog	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.53	1.1147	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	1	223	MLLT10	4977	chr10:21840850:+	PICALM	61585	chr11:85670103:-	ONLY_REF_SPLICE	YES	53	122	0.81	0.65	0.0119	2.6446	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.81	2.6565	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	1	221	MLLT10	2720	chr10:21827841:+	PICALM	60482	chr11:85671820:-	ONLY_REF_SPLICE	YES	54	140	0.8	0.61	0.0119	2.6208	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.8	2.6327	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	52	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6167	0.1067	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7234	FALSE	462	80	0	856	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-574K11.29	45	7	TIMM23	6952	chr10:51606988:-	RP11-574K11.29	13578	chr10:75473090:-	INCL_NON_REF_SPLICE	YES	323	3	0.14	0.95	0.5337	0.083	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-574K11.29->chr10:75463493-75473339:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.95	0.6167	TRUE	1	1	0	6	1	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	43	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5099	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5099	TRUE	0	0	0	518	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PICALM	1	145	MLLT10	1640	chr10:21823733:+	PICALM	61585	chr11:85670103:-	ONLY_REF_SPLICE	NO	62	122	0.7	0.54	0.0119	1.7196	YOSHIHARA_TCGA_num_samples[LAML:2],chimerdb_pubmed{myeloid/lymphoid or mixedlineage leukemia},{Klijn_CCL:Lymphoid=1},MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.7	1.7315	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--MLLT10	23	10	PICALM	23636	chr11:85685751:-	MLLT10	38328	chr10:21875223:+	ONLY_REF_SPLICE	YES	131	1	0.2	0.97	0.2728	0.1186	Mitelman{ALL=2},YOSHIHARA_TCGA_num_samples[LAML:2],{Klijn_CCL:Lymphoid=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.97	0.3914	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YY1--WDR25	22	6	YY1	4850	chr14:100741095:+	WDR25	26413	chr14:100992207:+	ONLY_REF_SPLICE	YES	235	14	0.11	0.67	0.2609	0.0712	{Klijn_CCL:Lymphoid=1},NEIGHBORS[93626],YY1->YY1_transcription_factor,chr14:100704635-100749129:+,WDR25->WD_repeat_domain_25,chr14:100842755-100996640:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.67	0.3321	FALSE	0	0	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AGO2--TRAPPC9	21	7	AGO2	5900	chr8:141582911:-	TRAPPC9	50180	chr8:141231682:-	ONLY_REF_SPLICE	YES	35	61	0.44	0.31	0.249	0.083	NEIGHBORS[72586],AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.44	0.332	FALSE	0	0	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA6--DYNC1I2	19	5	ITGA6	1617	chr2:173292698:+	DYNC1I2	29914	chr2:172546657:+	ONLY_REF_SPLICE	YES	83	865	0.22	0.03	0.2253	0.0593	ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6,DYNC1I2->chr2:172543919-172604930:+,dynein_cytoplasmic_1_intermediate_chain_2	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.22	0.2846	TRUE	0	0	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCAPG2--ESYT2	15	16	NCAPG2	16200	chr7:158464206:-	ESYT2	42021	chr7:158591763:-	ONLY_REF_SPLICE	YES	562	91	0.05	0.25	0.1779	0.1897	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:-:[26166],NCAPG2->chr7:158424003-158497520:-,non-SMC_condensin_II_complex_subunit_G2,ESYT2->chr7:158523686-158622944:-,extended_synaptotagmin_protein_2	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.25	0.3676	TRUE	0	0	0	2	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAD51B--FAM71D	10	6	RAD51B	18898	chr14:68878244:+	FAM71D	51134	chr14:67688496:+	ONLY_REF_SPLICE	YES	19	0	0.46	1	0.1186	0.0712	RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+,FAM71D->chr14:67656110-67695267:+,family_with_sequence_similarity_71_member_D	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	1	0.1898	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1304	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1304	TRUE	0	0	0	434	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA6--HAT1	9	1	ITGA6	1617	chr2:173292698:+	HAT1	30761	chr2:172782047:+	ONLY_REF_SPLICE	YES	83	49	0.11	0.17	0.1067	0.0119	ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6,HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.17	0.1186	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP1-249H1.4--RP11-367G18.1	7	4	RP1-249H1.4	2789	chr6:114191469:-	RP11-367G18.1	10356	chr6:113948877:-	INCL_NON_REF_SPLICE	YES	52	1	0.17	0.92	0.083	0.0474	RP1-249H1.4->chr6:114189178-114194516:-,RP11-367G18.1->chr6:113944737-113971276:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.92	0.1304	TRUE	0	0	0	3	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0593	0.1186	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1779	FALSE	462	80	0	856	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	8	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0593	0.0949	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1542	FALSE	462	80	0	856	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUX1--MARK3	4	9	CUX1	1415	chr7:101459373:+	MARK3	69926	chr14:103928742:+	ONLY_REF_SPLICE	YES	19	129	0.41	0.09	0.0474	0.1067	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.41	0.1541	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0712	0.0119	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0831	FALSE	499	1288	110	792	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELMO1--AOAH	4	8	ELMO1	9486	chr7:37354454:-	AOAH	47623	chr7:36713614:-	ONLY_REF_SPLICE	YES	111	79	0.1	0.13	0.0474	0.0949	ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1,AOAH->acyloxyacyl_hydrolase,chr7:36552456-36764154:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.13	0.1423	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FTL--MT-CO1	6	0	FTL	1134	chr19:49468691:+	MT-CO1	6232	chrM:6557:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0712	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0712	FALSE	0	7	0	14	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-662B19.2--WDR37	6	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0712	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0712	TRUE	31	42	1	25	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MEIS2--CTD-2515H24.4	5	3	MEIS2	12226	chr15:37329015:-	CTD-2515H24.4	28297	chr15:57821206:-	INCL_NON_REF_SPLICE	YES	14	0	0.36	1	0.0593	0.0356	MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,CTD-2515H24.4->chr15:57819385-57821207:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.0949	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	5	2	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	7729	0	0	1	0.0593	0.0237	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.083	FALSE	0	0	0	100	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0474	0.0712	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1186	FALSE	515	4851	409	746	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	5	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	53	1514	0.1	0	0.0593	0.0119	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.1	0.0712	FALSE	0	0	0	434	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	4	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	0	0.64	1	0.0474	0.0593	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.1067	FALSE	16	356	14	466	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--SKI	5	0	C17orf76-AS1	1593	chr17:16342728:+	SKI	17511	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0593	0	C17orf76-AS1->chr17:16342136-16381992:+,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0593	TRUE	0	0	0	2	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA6--DYNC1I2	5	0	ITGA6	1117	chr2:173292198:+	DYNC1I2	29914	chr2:172546657:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0593	0	ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6,DYNC1I2->chr2:172543919-172604930:+,dynein_cytoplasmic_1_intermediate_chain_2	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0.0474	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0948	FALSE	499	1288	110	792	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--KBTBD11	4	4	PROSC	2996	chr8:37623873:+	KBTBD11	19714	chr8:1954711:+	INCL_NON_REF_SPLICE	YES	593	912	0.01	0.01	0.0474	0.0474	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),KBTBD11->chr8:1922044-1955102:+,kelch_repeat_and_BTB_domain_containing_11	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0948	FALSE	0	0	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AGO2--TRAPPC9	4	3	AGO2	5900	chr8:141582911:-	TRAPPC9	53615	chr8:141034176:-	ONLY_REF_SPLICE	YES	35	46	0.17	0.13	0.0474	0.0356	NEIGHBORS[72586],AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.17	0.083	FALSE	0	0	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	4	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0474	0.0119	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0593	FALSE	0	24	0	62	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA4--KBTBD11	4	0	ITGA4	11125	chr2:182350719:+	KBTBD11	40487	chr8:1954711:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4,KBTBD11->chr8:1922044-1955102:+,kelch_repeat_and_BTB_domain_containing_11	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--KBTBD11	3	3	CPSF6	11046	chr12:69656342:+	KBTBD11	27212	chr8:1954711:+	INCL_NON_REF_SPLICE	YES	295	912	0.02	0.01	0.0356	0.0356	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,KBTBD11->chr8:1922044-1955102:+,kelch_repeat_and_BTB_domain_containing_11	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0712	FALSE	0	1	0	4	1	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELMO1--AOAH	1	10	ELMO1	38518	chr7:36901264:-	AOAH	47623	chr7:36713614:-	ONLY_REF_SPLICE	NO	107	79	0.09	0.12	0.0119	0.1186	ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1,AOAH->acyloxyacyl_hydrolase,chr7:36552456-36764154:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.12	0.1305	TRUE	0	0	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--MLLT10	1	10	PICALM	23636	chr11:85685751:-	MLLT10	37276	chr10:21860904:+	ONLY_REF_SPLICE	YES	131	1	0.08	0.92	0.0119	0.1186	Mitelman{ALL=2},YOSHIHARA_TCGA_num_samples[LAML:2],{Klijn_CCL:Lymphoid=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.92	0.1305	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAD51B--MPP5	2	6	RAD51B	18898	chr14:68878244:+	MPP5	42781	chr14:67736418:+	ONLY_REF_SPLICE	YES	19	18	0.3	0.31	0.0237	0.0712	RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+,MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.31	0.0949	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0.0119	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0475	FALSE	499	1288	110	792	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PABPC1--RPS28	3	1	PABPC1	2022	chr8:101734016:-	RPS28	18700	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	706	0	0.01	1	0.0356	0.0119	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0475	FALSE	0	0	0	6	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	5	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	0	0.58	1	0.0237	0.0593	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	1	0.083	FALSE	0	48	1	163	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	2	5	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	YES	250	115	0.03	0.06	0.0237	0.0593	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.06	0.083	TRUE	4	3	0	21	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	3	1	SPON2	4412	chr4:1195057:-	CTBP1	23049	chr4:1232125:-	ONLY_REF_SPLICE	YES	250	737	0.02	0.01	0.0356	0.0119	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0475	FALSE	2	0	0	8	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	3	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	41	0	0.09	1	0.0356	0.0119	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.0475	FALSE	272	151	14	158	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00926--IRF2BP2	3	0	LINC00926	1560	chr15:57593122:+	IRF2BP2	10271	chr1:234743598:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0	LINC00926->chr15:57592563-57599959:+,long_intergenic_non-protein_coding_RNA_926,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0356	FALSE	499	1288	110	792	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0356	FALSE	462	80	0	856	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NADK--PTMA	3	0	NADK	12501	chr1:1685546:-	PTMA	20006	chr2:232573234:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	NADK->NAD_kinase,chr1:1682671-1711896:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YY1--WDR25	1	7	YY1	6300	chr14:100742985:+	WDR25	26413	chr14:100992207:+	ONLY_REF_SPLICE	YES	352	14	0.02	0.36	0.0119	0.083	{Klijn_CCL:Lymphoid=1},NEIGHBORS[93626],YY1->YY1_transcription_factor,chr14:100704635-100749129:+,WDR25->WD_repeat_domain_25,chr14:100842755-100996640:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.36	0.0949	FALSE	0	0	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AZU1--AHSA2	2	0	AZU1	3807	chr19:829706:+	AHSA2	10681	chr2:61406116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	AZU1->azurocidin_1,chr19:825097-832017:+,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf63--NCAPH2	2	0	C1orf63	13914	chr1:25571641:-	NCAPH2	26303	chr22:50959394:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,NCAPH2->chr22:50946645-50961901:+,non-SMC_condensin_II_complex_subunit_H2	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC12A--CHMP1A	2	0	CLEC12A	6135	chr12:10134728:+	CHMP1A	18656	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:4=pct:3.0],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Whole_Blood=4,Lung=2},CLEC12A->C-type_lectin_domain_family_12_member_A,chr12:10103915-10148293:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	5	0	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU2--TRIM13	2	0	DLEU2	5811	chr13:50642233:-	TRIM13	16508	chr13:50571803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	LOCAL_INVERSION:-:+:[6652],DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),TRIM13->chr13:50570024-50594617:+,tripartite_motif_containing_13	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	1	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DTL--PPP2R5A	2	0	DTL	13203	chr1:212254092:+	PPP2R5A	28627	chr1:212502477:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	1	0	3	1	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ESYT2--AHSA2	2	0	ESYT2	19948	chr7:158536220:-	AHSA2	33700	chr2:61406116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	ESYT2->chr7:158523686-158622944:-,extended_synaptotagmin_protein_2,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCKAP1L--TRIM22	2	0	NCKAP1L	12085	chr12:54911722:+	TRIM22	34846	chr11:5719545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	NCKAP1L->NCK_associated_protein_1_like,chr12:54891495-54937726:+,TRIM22->chr11:5710919-5758319:+,tripartite_motif_containing_22	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--DDX39B	2	0	RCC1	1142	chr1:28832596:+	DDX39B	28781	chr6:31499182:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,DDX39B->DEAD-box_helicase_39B,chr6:31497996-31510225:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	1	0	1	1	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-361D15.2--PNPLA8	2	0	RP11-361D15.2	1060	chr15:59980775:+	PNPLA8	8818	chr7:108161965:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	RP11-361D15.2->chr15:59980716-59981617:+,PNPLA8->chr7:108110866-108210110:-,patatin_like_phospholipase_domain_containing_8	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL27A--RNF149	2	0	RPL27A	3482	chr11:8706439:+	RNF149	24307	chr2:101888206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	RPL27A->chr11:8703958-8736306:+,ribosomal_protein_L27a,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	2	0	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	37	101	7	40	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TASP1--XRN2	2	0	TASP1	11495	chr20:13550154:-	XRN2	45706	chr20:21349101:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	TASP1->chr20:13246709-13619587:-,taspase_1,XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--CTBP1	2	0	UVSSA	1924	chr4:1341977:+	CTBP1	24040	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	2	0	0	2	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFAS1--RNF149	2	0	ZFAS1	2031	chr20:47895745:+	RNF149	20350	chr2:101888206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0237	TRUE	0	1	0	3	1	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNFAIP8--HSD17B4	1	3	TNFAIP8	1216	chr5:118604602:+	HSD17B4	19973	chr5:118792010:+	ONLY_REF_SPLICE	NO	266	321	0.01	0.01	0.0119	0.0356	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0475	FALSE	0	0	0	4	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNFAIP8--HSD17B4	1	3	TNFAIP8	1216	chr5:118604602:+	HSD17B4	22456	chr5:118809603:+	ONLY_REF_SPLICE	YES	266	402	0.01	0.01	0.0119	0.0356	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0475	FALSE	0	2	0	7	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHX15--PPARGC1A	1	2	DHX15	7599	chr4:24556348:-	PPARGC1A	29600	chr4:23886554:-	ONLY_REF_SPLICE	YES	718	0	0	1	0.0119	0.0237	DHX15->DEAH-box_helicase_15,chr4:24519064-24586173:-,PPARGC1A->PPARG_coactivator_1_alpha,chr4:23756664-23905712:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0356	FALSE	0	0	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB2--ARHGAP15	1	2	ZEB2	20128	chr2:145182363:-	ARHGAP15	56397	chr2:144276835:+	ONLY_REF_SPLICE	NO	267	413	0.01	0.01	0.0119	0.0237	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.08%,GTEx_FI:{Blood=[count:17=pct:9.8],Whole_Blood=[count:16=pct:12.1],Nerve=[count:6=pct:3.5],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=23,Nerve_-_Tibial=9,Spleen=4,Lung=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0356	FALSE	1	0	0	2	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATF6B--RBM39	1	1	ATF6B	4790	chr6:32088548:-	RBM39	30469	chr20:34301018:-	ONLY_REF_SPLICE	YES	560	749	0	0	0.0119	0.0119	{Klijn_CCL:Lung=1},ATF6B->activating_transcription_factor_6_beta,chr6:32065953-32096030:-,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0238	FALSE	0	1	0	2	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRD1--ARFGAP3	1	1	BRD1	10011	chr22:50192206:-	ARFGAP3	25447	chr22:43237022:-	ONLY_REF_SPLICE	YES	23	102	0.08	0.02	0.0119	0.0119	BRD1->bromodomain_containing_1,chr22:50166931-50221160:-,ARFGAP3->ADP_ribosylation_factor_GTPase_activating_protein_3,chr22:43192508-43254112:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.08	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALR--HSP90AB1	1	1	CALR	3310	chr19:13051701:+	HSP90AB1	10878	chr6:44217114:+	ONLY_REF_SPLICE	YES	4126	7633	0	0	0.0119	0.0119	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,CALR->calreticulin,chr19:13049392-13055303:+,HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC12A--SRPK1	1	1	CLEC12A	6135	chr12:10134728:+	SRPK1	26010	chr6:35837678:-	ONLY_REF_SPLICE	YES	537	942	0	0	0.0119	0.0119	CLEC12A->C-type_lectin_domain_family_12_member_A,chr12:10103915-10148293:+,SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COA1--STK17A	1	1	COA1	1289	chr7:43769028:-	STK17A	27976	chr7:43635500:+	ONLY_REF_SPLICE	NO	29	21	0.06	0.09	0.0119	0.0119	NEIGHBORS_OVERLAP:-:+:[18330],COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,STK17A->chr7:43622357-43666385:+,serine/threonine_kinase_17a	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.09	0.0238	FALSE	0	3	1	13	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CREB1--METTL21A	1	1	CREB1	15140	chr2:208442379:+	METTL21A	37380	chr2:208446884:-	ONLY_REF_SPLICE	NO	59	47	0.03	0.04	0.0119	0.0119	GTEx_v2:{count=2;pct=0.02%;dist=Ovary=1,Cells_-_Transformed_fibroblasts=1},NEIGHBORS_OVERLAP:+:-:[22800],CREB1->Oncogene{Bushman},cAMP_responsive_element_binding_protein_1,chr2:208394461-208468155:+,METTL21A->Oncogene{Bushman},chr2:208445355-208490652:-,methyltransferase_like_21A	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.0238	FALSE	1	1	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--EIF4G3	1	1	DANCR	1530	chr4:53579126:+	EIF4G3	17123	chr1:21329301:-	ONLY_REF_SPLICE	NO	207	60	0.01	0.03	0.0119	0.0119	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--MBD2	1	1	DANCR	1530	chr4:53579126:+	MBD2	9065	chr18:51731527:-	ONLY_REF_SPLICE	YES	207	162	0.01	0.01	0.0119	0.0119	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPATCH2L--SRPK1	1	1	GPATCH2L	16680	chr14:76662315:+	SRPK1	51422	chr6:35837678:-	ONLY_REF_SPLICE	YES	73	942	0.03	0	0.0119	0.0119	GPATCH2L->G-patch_domain_containing_2_like,chr14:76618259-76720685:+,SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	1	1	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0119	0.0119	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0238	FALSE	0	26	0	50	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPP6--SP4	1	1	MPP6	1326	chr7:24613212:+	SP4	27537	chr7:21468295:+	ONLY_REF_SPLICE	YES	3	6	0.4	0.25	0.0119	0.0119	MPP6->chr7:24612887-24733812:+,membrane_palmitoylated_protein_6,SP4->Sp4_transcription_factor,chr7:21467652-21554440:+	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.4	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--CHMP1A	1	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	593	216	0	0.01	0.0119	0.0119	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0238	FALSE	13	55	3	29	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RB1--ITM2B	1	1	RB1	17872	chr13:48955579:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	NO	232	334	0.01	0.01	0.0119	0.0119	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0238	FALSE	27	49	8	8	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1398P2.1--CTBP1	1	1	RP11-1398P2.1	1096	chr4:1581885:-	CTBP1	8277	chr4:1235307:-	ONLY_REF_SPLICE	YES	5	115	0.29	0.02	0.0119	0.0119	RP11-1398P2.1->chr4:1575789-1581980:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.29	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0119	0.0119	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0238	TRUE	62	24	1	171	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBB6--PPIEL	1	1	TUBB6	2127	chr18:12308794:+	PPIEL	19686	chr1:40007513:-	ONLY_REF_SPLICE	NO	287	1	0.01	0.67	0.0119	0.0119	TUBB6->chr18:12307668-12344319:+,tubulin_beta_6_class_V,PPIEL->chr1:39997510-40024379:-,peptidylprolyl_isomerase_E_like_pseudogene	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.67	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000406
U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--CTBP1	1	1	UVSSA	7499	chr4:1349033:+	CTBP1	24040	chr4:1235307:-	ONLY_REF_SPLICE	YES	35	115	0.05	0.02	0.0119	0.0119	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	U937_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.0238	TRUE	23	5	0	14	0	FALSE	ACH-000406
RL952_ENDOMETRIUM	TFG--GPR128	166	64	TFG	5019	chr3:100438902:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	280	0	0.45	1	1.6861	0.6501	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	RL952_ENDOMETRIUM	0.45	1	2.3362	TRUE	12	123	7	17	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	RARB--NGLY1	130	39	RARB	7449	chr3:25542814:+	NGLY1	23063	chr3:25805802:-	ONLY_REF_SPLICE	YES	26	33	0.87	0.84	1.3204	0.3961	RARB->Oncogene{Bushman},chr3:25215823-25639423:+,retinoic_acid_receptor_beta,NGLY1->N-glycanase_1,chr3:25760435-25831530:-	RL952_ENDOMETRIUM	0.84	0.87	1.7165	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	120	35	CNOT1	1159	chr16:58663632:-	SLC38A7	55511	chr16:58714145:-	ONLY_REF_SPLICE	YES	40	43	0.79	0.78	1.2189	0.3555	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	0.78	0.79	1.5744	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	TIMM23B--LINC00843	79	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.8024	0.2235	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RL952_ENDOMETRIUM	0.98	1	1.0259	TRUE	508	994	45	981	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND6--MT-ND5	83	1	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1915	1	0.04	0.843	0.0102	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	RL952_ENDOMETRIUM	0.04	1	0.8532	FALSE	101	855	57	72	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	69	43	CNOT1	1159	chr16:58663632:-	SLC38A7	52514	chr16:58718082:-	ONLY_REF_SPLICE	YES	40	15	0.74	0.88	0.7008	0.4368	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	0.74	0.88	1.1376	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	3	209	MT-ND4	1724	chrM:11483:+	MT-ND4L	5482	chrM:10573:+	INCL_NON_REF_SPLICE	YES	4375	0	0.05	1	0.0305	2.1228	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.05	1	2.1533	FALSE	344	827	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	4	204	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	8	1	0.96	1	0.0406	2.0721	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.96	1	2.1127	FALSE	344	826	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	5	198	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	5	0	0.98	1	0.0508	2.0111	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.98	1	2.0619	FALSE	344	826	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	UBA1--UBE2W	53	0	UBA1	13612	chrX:47068566:+	UBE2W	35321	chr8:74701725:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5383	0	UBA1->chrX:47050260-47074527:+,ubiquitin_like_modifier_activating_enzyme_1,UBE2W->chr8:74692332-74791145:-,ubiquitin_conjugating_enzyme_E2_W_(putative)	RL952_ENDOMETRIUM	1	1	0.5383	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	MT-ND6--MT-TE	44	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4469	0.0609	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RL952_ENDOMETRIUM	1	1	0.5078	FALSE	499	1288	110	792	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	6	148	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	1	0.96	0.99	0.0609	1.5033	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.96	0.99	1.5642	FALSE	344	821	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	TIMM23--RP11-464F9.1	43	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4368	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RL952_ENDOMETRIUM	1	1	0.4368	TRUE	519	3926	326	965	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-TA--MT-TC	37	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3758	0.0203	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RL952_ENDOMETRIUM	1	1	0.3961	FALSE	462	80	0	856	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND6--MT-TE	31	24	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.3149	0.2438	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RL952_ENDOMETRIUM	0.95	1	0.5587	FALSE	499	1288	110	792	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	RP11-421F16.3--SUMO3	37	0	RP11-421F16.3	1829	chr12:27125347:+	SUMO3	11565	chr21:46228445:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3758	0	RP11-421F16.3->chr12:27124519-27132515:+,SUMO3->chr21:46225532-46238694:-,small_ubiquitin-like_modifier_3	RL952_ENDOMETRIUM	1	1	0.3758	TRUE	0	0	0	3	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	3	129	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	58	0	0.69	1	0.0305	1.3103	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.69	1	1.3408	FALSE	344	827	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	RP11-123O10.4--GRIP1	32	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.325	0.0914	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RL952_ENDOMETRIUM	1	1	0.4164	FALSE	416	2512	207	587	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	ZNF654--HMGB2	29	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2946	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RL952_ENDOMETRIUM	1	1	0.2946	TRUE	0	0	0	518	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	AC133680.1--RARB	26	0	AC133680.1	4345	chr3:24900243:+	RARB	13539	chr3:25502684:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2641	0	NEIGHBORS[27],AC133680.1->chr3:24729410-25215796:+,RARB->Oncogene{Bushman},chr3:25215823-25639423:+,retinoic_acid_receptor_beta	RL952_ENDOMETRIUM	1	1	0.2641	FALSE	0	0	0	1	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	12	46	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	13553	0	0	1	0.1219	0.4672	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0	1	0.5891	FALSE	328	800	43	304	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	RP11-114H23.1--RP11-114H23.2	19	15	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.193	0.1524	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	RL952_ENDOMETRIUM	0.94	1	0.3454	FALSE	81	155	12	160	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	ARF1--MT-CO1	21	3	ARF1	6843	chr1:228285395:+	MT-CO1	11358	chrM:5901:+	INCL_NON_REF_SPLICE	YES	1070	0	0.02	1	0.2133	0.0305	ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RL952_ENDOMETRIUM	0.02	1	0.2438	FALSE	0	0	0	7	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	14	29	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	457	0	0.09	1	0.1422	0.2946	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.09	1	0.4368	FALSE	344	827	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND6--MT-TE	19	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.193	0.0711	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RL952_ENDOMETRIUM	1	1	0.2641	FALSE	499	1288	110	792	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	5	59	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	6	0	0.91	1	0.0508	0.5993	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.91	1	0.6501	FALSE	344	821	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	3	65	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	1	1	0.99	0.99	0.0305	0.6602	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.99	0.99	0.6907	FALSE	344	821	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	OR51S1--TP53I11	19	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.193	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	RL952_ENDOMETRIUM	1	1	0.193	TRUE	402	216	10	229	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-CO3--MT-ATP6	5	54	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	2	32	0.97	0.65	0.0508	0.5485	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL952_ENDOMETRIUM	0.65	0.97	0.5993	FALSE	189	492	56	216	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	7	46	MT-ND4	1303	chrM:11062:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	53	0	0.5	1	0.0711	0.4672	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.5	1	0.5383	FALSE	344	827	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	9	37	CNOT1	1159	chr16:58663632:-	SLC38A7	52609	chr16:58717987:-	ONLY_REF_SPLICE	YES	40	37	0.53	0.55	0.0914	0.3758	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	0.53	0.55	0.4672	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	MT-CO3--MT-ATP6	5	53	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	12	9	0.83	0.87	0.0508	0.5383	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL952_ENDOMETRIUM	0.83	0.87	0.5891	FALSE	189	492	56	216	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	6	46	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	6335	0	0.01	1	0.0609	0.4672	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.01	1	0.5281	FALSE	344	827	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	6	46	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	790	0	0.06	1	0.0609	0.4672	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.06	1	0.5281	FALSE	344	827	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-CO3--MT-ATP6	3	55	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	17	9	0.77	0.87	0.0305	0.5586	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL952_ENDOMETRIUM	0.77	0.87	0.5891	FALSE	189	492	56	216	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	5	46	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	12	0	0.81	1	0.0508	0.4672	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.81	1	0.518	FALSE	344	826	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	9	29	MT-ND4	1452	chrM:11211:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	352	0	0.1	1	0.0914	0.2946	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.1	1	0.386	FALSE	344	827	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	3	52	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	1	1	0.98	0.98	0.0305	0.5282	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.98	0.98	0.5587	FALSE	344	821	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-CO3--MT-ATP6	6	38	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.0609	0.386	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL952_ENDOMETRIUM	0.96	1	0.4469	FALSE	189	492	56	216	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	ARF1--MT-CO1	11	12	ARF1	6856	chr1:228285408:+	MT-CO1	11371	chrM:5914:+	INCL_NON_REF_SPLICE	YES	992	0	0.02	1	0.1117	0.1219	ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RL952_ENDOMETRIUM	0.02	1	0.2336	FALSE	0	0	0	7	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	RP11-114H23.1--RP11-114H23.2	11	10	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.1117	0.1016	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	RL952_ENDOMETRIUM	0.91	1	0.2133	FALSE	81	155	12	160	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	1	48	CNOT1	3429	chr16:58657186:-	SLC38A7	52514	chr16:58718082:-	ONLY_REF_SPLICE	NO	96	15	0.34	0.77	0.0102	0.4875	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	0.34	0.77	0.4977	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	6	28	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0609	0.2844	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.97	1	0.3453	FALSE	344	821	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND6--MT-TE	7	23	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0711	0.2336	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RL952_ENDOMETRIUM	1	1	0.3047	FALSE	499	1288	110	792	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND6--MT-TE	4	35	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.0406	0.3555	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RL952_ENDOMETRIUM	0.93	1	0.3961	FALSE	499	1288	110	792	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-CO3--MT-ATP6	3	37	MT-CO3	1036	chrM:9242:+	MT-ATP6	4744	chrM:8486:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0305	0.3758	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL952_ENDOMETRIUM	0.98	1	0.4063	FALSE	189	492	56	216	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND6--MT-TE	3	36	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0305	0.3657	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RL952_ENDOMETRIUM	0.95	1	0.3962	FALSE	499	1288	110	792	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-CO3--MT-ATP6	3	34	MT-CO3	1035	chrM:9241:+	MT-ATP6	5316	chrM:9058:+	INCL_NON_REF_SPLICE	YES	1	7	0.97	0.84	0.0305	0.3453	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL952_ENDOMETRIUM	0.84	0.97	0.3758	FALSE	189	492	56	216	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	1	39	CNOT1	2281	chr16:58658577:-	SLC38A7	55511	chr16:58714145:-	ONLY_REF_SPLICE	YES	119	43	0.25	0.48	0.0102	0.3961	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	0.25	0.48	0.4063	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	1	39	CNOT1	3429	chr16:58657186:-	SLC38A7	55511	chr16:58714145:-	ONLY_REF_SPLICE	YES	96	43	0.29	0.48	0.0102	0.3961	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	0.29	0.48	0.4063	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	1	39	CNOT1	2301	chr16:58658557:-	SLC38A7	55511	chr16:58714145:-	ONLY_REF_SPLICE	YES	123	43	0.25	0.48	0.0102	0.3961	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	0.25	0.48	0.4063	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	MT-CO3--MT-ATP6	3	28	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.78	0.0305	0.2844	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL952_ENDOMETRIUM	0.78	1	0.3149	FALSE	189	492	56	216	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-CO3--MT-ATP6	7	11	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0711	0.1117	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL952_ENDOMETRIUM	0.9	1	0.1828	FALSE	189	492	56	216	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND6--MT-ND5	9	1	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	2	1841	0.83	0.01	0.0914	0.0102	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	RL952_ENDOMETRIUM	0.01	0.83	0.1016	FALSE	101	855	57	72	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND6--MT-ND5	9	1	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	1864	1	0.01	0.0914	0.0102	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	RL952_ENDOMETRIUM	0.01	1	0.1016	FALSE	101	855	57	72	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	3	24	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	11	0	0.71	1	0.0305	0.2438	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.71	1	0.2743	FALSE	344	826	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND6--MT-TE	3	24	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0305	0.2438	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RL952_ENDOMETRIUM	0.9	1	0.2743	FALSE	499	1288	110	792	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND6--MT-ND5	8	3	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	3525	1	0	0.0813	0.0305	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	RL952_ENDOMETRIUM	0	1	0.1118	FALSE	101	855	57	72	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-CO3--MT-ATP6	8	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	12	0	0.43	1	0.0813	0.0102	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL952_ENDOMETRIUM	0.43	1	0.0915	FALSE	189	492	56	216	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-CO3--MT-ATP6	3	17	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.0305	0.1727	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL952_ENDOMETRIUM	0.91	1	0.2032	FALSE	189	492	56	216	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	3	16	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0.1625	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	1	1	0.193	FALSE	344	821	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-CO3--MT-ATP6	6	3	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	14	0	0.39	1	0.0609	0.0305	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL952_ENDOMETRIUM	0.39	1	0.0914	FALSE	189	492	56	216	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	3	12	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	15	0	0.5	1	0.0305	0.1219	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.5	1	0.1524	FALSE	344	826	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	3	12	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	12	0	0.56	1	0.0305	0.1219	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.56	1	0.1524	FALSE	344	826	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	NPM1P24--SET	6	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RL952_ENDOMETRIUM	1	1	0.0609	TRUE	0	0	0	434	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	TAPBP--MT-ND4L	6	0	TAPBP	4456	chr6:33273137:-	MT-ND4L	12323	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	TAPBP->TAP_binding_protein_(tapasin),chr6:33267471-33282164:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	1	1	0.0609	FALSE	0	0	0	3	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	EXOC6B--TACR1	5	3	EXOC6B	19117	chr2:72692289:-	TACR1	38254	chr2:75347894:-	ONLY_REF_SPLICE	YES	51	0	0.14	1	0.0508	0.0305	EXOC6B->chr2:72403113-73053170:-,exocyst_complex_component_6B,TACR1->chr2:75273590-75426826:-,tachykinin_receptor_1	RL952_ENDOMETRIUM	0.14	1	0.0813	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	5	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0508	0.0305	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	1	1	0.0813	FALSE	344	821	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0508	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RL952_ENDOMETRIUM	1	1	0.0508	FALSE	499	1288	110	792	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0508	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RL952_ENDOMETRIUM	1	1	0.0508	FALSE	292	1546	117	613	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	DHX15--PPARGC1A	4	2	DHX15	8767	chr4:24550478:-	PPARGC1A	29600	chr4:23886554:-	ONLY_REF_SPLICE	YES	173	0	0.03	1	0.0406	0.0203	DHX15->DEAH-box_helicase_15,chr4:24519064-24586173:-,PPARGC1A->PPARG_coactivator_1_alpha,chr4:23756664-23905712:-	RL952_ENDOMETRIUM	0.03	1	0.0609	TRUE	0	0	0	1	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-TA--MT-TC	4	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0406	0.0102	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RL952_ENDOMETRIUM	1	1	0.0508	FALSE	462	80	0	856	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	20	1	0.2	0.0406	0.0102	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RL952_ENDOMETRIUM	0.2	1	0.0508	TRUE	465	1949	224	605	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL952_ENDOMETRIUM	1	1	0.0406	FALSE	189	492	56	216	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	NPM1P24--SET	4	0	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RL952_ENDOMETRIUM	1	1	0.0406	TRUE	0	0	0	434	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	RP11-123O10.4--GRIP1	3	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0.0406	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RL952_ENDOMETRIUM	1	1	0.0711	FALSE	93	270	15	244	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	SLC1A5--MT-ND4L	4	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	1	1	0.0406	FALSE	0	0	0	189	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND6--MT-ND5	3	3	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	3398	1	0	0.0305	0.0305	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	RL952_ENDOMETRIUM	0	1	0.061	FALSE	101	855	57	72	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	NRIP1--AF127936.7	3	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.19	1	0.0305	0.0203	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RL952_ENDOMETRIUM	0.19	1	0.0508	FALSE	164	806	69	479	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	3	1	CNOT1	1159	chr16:58663632:-	SLC38A7	59730	chr16:58709926:-	ONLY_REF_SPLICE	YES	40	119	0.09	0.03	0.0305	0.0102	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	0.03	0.09	0.0407	TRUE	0	0	0	1	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	H19--MT-ND2	3	1	H19	4377	chr11:2016982:-	MT-ND2	8802	chrM:5318:+	INCL_NON_REF_SPLICE	YES	6703	5383	0	0	0.0305	0.0102	H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	RL952_ENDOMETRIUM	0	0	0.0407	FALSE	0	0	0	3	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	3	1	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0305	0.0102	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	0.8	1	0.0407	FALSE	344	821	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND6--MT-ND5	3	1	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	2546	1905	0	0	0.0305	0.0102	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	RL952_ENDOMETRIUM	0	0	0.0407	FALSE	101	855	57	72	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	RP11-114H23.1--RP11-114H23.2	2	5	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	2	9	0.78	0.44	0.0203	0.0508	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	RL952_ENDOMETRIUM	0.44	0.78	0.0711	FALSE	81	155	12	160	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	TTF1--CCNY	3	1	TTF1	11418	chr9:135261943:-	CCNY	20406	chr10:35578329:+	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.0305	0.0102	TTF1->chr9:135251008-135282209:-,transcription_termination_factor,_RNA_polymerase_I,CCNY->chr10:35535953-35860852:+,cyclin_Y	RL952_ENDOMETRIUM	0.2	1	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	H19--MT-ND2	3	0	H19	4385	chr11:2016974:-	MT-ND2	8810	chrM:5326:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	RL952_ENDOMETRIUM	1	1	0.0305	FALSE	0	0	0	3	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RL952_ENDOMETRIUM	1	1	0.0305	FALSE	189	492	56	216	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RL952_ENDOMETRIUM	1	1	0.0305	FALSE	344	821	44	306	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND6--MT-ND5	3	0	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	RL952_ENDOMETRIUM	1	1	0.0305	FALSE	101	855	57	72	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-ND6--MT-ND5	3	0	MT-ND6	1412	chrM:14262:-	MT-ND5	6311	chrM:14122:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	RL952_ENDOMETRIUM	1	1	0.0305	FALSE	101	855	57	72	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RL952_ENDOMETRIUM	1	1	0.0305	FALSE	462	80	0	856	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	MIR205HG--PANK2	2	3	MIR205HG	4006	chr1:209605170:+	PANK2	16617	chr20:3899318:+	ONLY_REF_SPLICE	NO	242	47	0.02	0.1	0.0203	0.0305	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2	RL952_ENDOMETRIUM	0.02	0.1	0.0508	TRUE	0	15	0	5	1	FALSE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	2	0	CNOT1	1159	chr16:58663632:-	SLC38A7	63616	chr16:58704071:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	RP11-2C24.4--CPNE1	2	0	RP11-2C24.4	2209	chr16:30753229:+	CPNE1	13172	chr20:34220845:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	RP11-2C24.4->chr16:30751988-30762702:+,CPNE1->chr20:34213953-34252878:-,copine_1	RL952_ENDOMETRIUM	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000965
RL952_ENDOMETRIUM	SBNO2--DAZAP1	2	0	SBNO2	1112	chr19:1174171:-	DAZAP1	32349	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_FI:{Skin=[count:2=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Lung=1,Minor_Salivary_Gland=1,Liver=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	RL952_ENDOMETRIUM	1	1	0.0203	TRUE	4	1	0	5	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	UBL3--SLC7A1	2	0	UBL3	2173	chr13:30423649:-	SLC7A1	14036	chr13:30127997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	RL952_ENDOMETRIUM	1	1	0.0203	TRUE	1	5	0	8	1	TRUE	ACH-000965
RL952_ENDOMETRIUM	CNOT1--SLC38A7	1	1	CNOT1	1159	chr16:58663632:-	SLC38A7	61540	chr16:58706147:-	ONLY_REF_SPLICE	YES	40	141	0.05	0.01	0.0102	0.0102	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	RL952_ENDOMETRIUM	0.01	0.05	0.0204	FALSE	0	1	0	1	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	CRIM1--FEZ2	1	1	CRIM1	18863	chr2:36749456:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	243	96	0.01	0.02	0.0102	0.0102	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	RL952_ENDOMETRIUM	0.01	0.02	0.0204	FALSE	2	2	0	15	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	8	1	0.2	0.0102	0.0102	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RL952_ENDOMETRIUM	0.2	1	0.0204	TRUE	458	1351	185	561	0	FALSE	ACH-000965
RL952_ENDOMETRIUM	TTF1--CCNY	1	1	TTF1	11418	chr9:135261943:-	CCNY	28229	chr10:35772332:+	ONLY_REF_SPLICE	YES	16	76	0.11	0.03	0.0102	0.0102	TTF1->chr9:135251008-135282209:-,transcription_termination_factor,_RNA_polymerase_I,CCNY->chr10:35535953-35860852:+,cyclin_Y	RL952_ENDOMETRIUM	0.03	0.11	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000965
MHHNB11_AUTONOMIC_GANGLIA	KANSL1--ARL17B	305	74	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	27	66	0.93	0.85	2.9399	0.7133	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	MHHNB11_AUTONOMIC_GANGLIA	0.85	0.93	3.6532	TRUE	181	1564	124	196	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	113	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.96	1.0892	0.1639	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MHHNB11_AUTONOMIC_GANGLIA	0.96	1	1.2531	TRUE	508	994	45	981	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	91	20	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	22	1	0.83	0.8772	0.1928	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MHHNB11_AUTONOMIC_GANGLIA	0.83	1	1.07	TRUE	458	1351	185	561	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	RP11-145O15.3--DLC1	93	0	RP11-145O15.3	1074	chr8:13462046:-	DLC1	8864	chr8:13357705:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.8964	0	NEIGHBORS[41999],RP11-145O15.3->chr8:13415166-13462119:-,DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.8964	FALSE	2	3	0	1	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	NF1--RAB11FIP4	70	18	NF1	1443	chr17:29422387:+	RAB11FIP4	85998	chr17:29844669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.6747	0.1735	{Klijn_CCL:Brain=2},NEIGHBORS[9508],NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,RAB11FIP4->RAB11_family_interacting_protein_4,chr17:29718642-29865236:+	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.8482	FALSE	0	0	0	1	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	72	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	41	2	0.64	0.97	0.694	0.0193	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MHHNB11_AUTONOMIC_GANGLIA	0.64	0.97	0.7133	TRUE	519	3926	326	965	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	66	13	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	112	1	0.41	0.6362	0.1253	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MHHNB11_AUTONOMIC_GANGLIA	0.41	1	0.7615	TRUE	465	1949	224	605	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	EEF1DP3--FRY	51	14	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	1	1	0.98	0.98	0.4916	0.1349	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	MHHNB11_AUTONOMIC_GANGLIA	0.98	0.98	0.6265	FALSE	20	24	2	21	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	KIF5C--GALNT13	50	10	KIF5C	17355	chr2:149840280:+	GALNT13	38872	chr2:154757449:+	ONLY_REF_SPLICE	YES	56	0	0.52	1	0.482	0.0964	{Klijn_CCL:Brain=1},KIF5C->chr2:149632819-149883273:+,kinesin_family_member_5C,GALNT13->chr2:154728426-155310361:+,polypeptide_N-acetylgalactosaminyltransferase_13	MHHNB11_AUTONOMIC_GANGLIA	0.52	1	0.5784	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	47	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.94	1	0.453	0.0386	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MHHNB11_AUTONOMIC_GANGLIA	0.94	1	0.4916	FALSE	292	1546	117	613	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	ZNF654--HMGB2	45	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4338	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.4338	TRUE	0	0	0	518	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	EEF2--RPS28	26	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	5036	0	0.01	1	0.2506	0.0096	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MHHNB11_AUTONOMIC_GANGLIA	0.01	1	0.2602	TRUE	0	0	0	100	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	TSPAN5--ADH4	24	3	TSPAN5	1484	chr4:99579297:-	ADH4	22838	chr4:100063931:-	ONLY_REF_SPLICE	YES	13	0	0.68	1	0.2313	0.0289	{Klijn_CCL:Lung=1,Brain=1},TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,ADH4->alcohol_dehydrogenase_4_(class_II),_pi_polypeptide,chr4:100044808-100078949:-	MHHNB11_AUTONOMIC_GANGLIA	0.68	1	0.2602	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	22	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2310	0	0.01	1	0.2121	0.0096	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MHHNB11_AUTONOMIC_GANGLIA	0.01	1	0.2217	FALSE	13	9	0	364	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	21	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2024	0.0193	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.2217	FALSE	499	1288	110	792	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	NPM1P24--SET	20	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1928	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.1928	TRUE	0	0	0	434	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	MT-ND1--MT-TL1	16	12	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1542	0.1157	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.2699	FALSE	210	95	5	49	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	RNF152--RP11-879F14.1	16	2	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	9	0	0.67	1	0.1542	0.0193	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	MHHNB11_AUTONOMIC_GANGLIA	0.67	1	0.1735	FALSE	275	472	65	43	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	AC093642.5--XX-C2158C6.2	14	5	AC093642.5	2310	chr2:243037178:+	XX-C2158C6.2	15418	chr6:171054606:+	ONLY_REF_SPLICE	YES	16	0	0.54	1	0.1349	0.0482	AC093642.5->chr2:243030784-243102304:+,XX-C2158C6.2->chr6:171054606-171055065:+	MHHNB11_AUTONOMIC_GANGLIA	0.54	1	0.1831	TRUE	0	2	0	2	2	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	MT-ND1--MT-TL1	3	39	MT-ND1	1094	chrM:3400:+	MT-TL1	4988	chrM:3261:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0.3759	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.4048	FALSE	210	95	5	49	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	MT-ND1--MT-TL1	4	20	MT-ND1	1342	chrM:3648:+	MT-TL1	5013	chrM:3286:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0.1928	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.2314	FALSE	210	95	5	49	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	VTI1A--RP11-57H14.3	9	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0868	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0868	FALSE	272	151	14	158	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	JSRP1--RPS28	8	3	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.92	0.0771	0.0289	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MHHNB11_AUTONOMIC_GANGLIA	0.92	1	0.106	TRUE	0	1	0	84	1	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	EIF1--RPS28	8	1	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0771	0.0096	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MHHNB11_AUTONOMIC_GANGLIA	0.82	1	0.0867	TRUE	0	0	0	81	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	7	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2330	0	0	1	0.0675	0.0096	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MHHNB11_AUTONOMIC_GANGLIA	0	1	0.0771	FALSE	13	9	0	364	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	4	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0386	0.106	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHNB11_AUTONOMIC_GANGLIA	0.94	1	0.1446	FALSE	499	1288	110	792	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	KANSL1--ARL17B	4	10	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	53	66	0.21	0.17	0.0386	0.0964	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	MHHNB11_AUTONOMIC_GANGLIA	0.17	0.21	0.135	TRUE	105	90	7	93	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	6	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0.0193	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0771	FALSE	499	1288	110	792	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	13	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0289	0.1253	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHNB11_AUTONOMIC_GANGLIA	0.94	1	0.1542	FALSE	499	1288	110	792	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	EEF1DP3--FRY	5	4	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	13	1	0.41	0.9	0.0482	0.0386	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	MHHNB11_AUTONOMIC_GANGLIA	0.41	0.9	0.0868	FALSE	18	26	2	21	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	6	0	HSP90AB1	4415	chr6:44218238:+	MT-RNR2	11368	chrM:2241:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0578	FALSE	0	0	0	11	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	MT-ND2--MT-TM	6	0	MT-ND2	1017	chrM:4486:+	MT-TM	5076	chrM:4435:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	LOCAL_REARRANGEMENT:+:[1],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-TM->chrM:4402-4469:+,mitochondrially_encoded_tRNA_methionine	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0578	FALSE	74	23	0	9	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	CPSF6--JAG2	5	3	CPSF6	11046	chr12:69656342:+	JAG2	34882	chr14:105607666:-	INCL_NON_REF_SPLICE	YES	9	1	0.47	0.89	0.0482	0.0289	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,JAG2->Oncogene{Bushman},chr14:105607318-105635161:-,jagged_2	MHHNB11_AUTONOMIC_GANGLIA	0.47	0.89	0.0771	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	RP11-120D5.1--MID1	5	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	1	0.78	0.88	0.0482	0.0193	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MHHNB11_AUTONOMIC_GANGLIA	0.78	0.88	0.0675	FALSE	16	356	14	466	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	AC093642.5--XX-C2158C6.2	4	5	AC093642.5	9202	chr2:243081039:+	XX-C2158C6.2	15418	chr6:171054606:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0386	0.0482	AC093642.5->chr2:243030784-243102304:+,XX-C2158C6.2->chr6:171054606-171055065:+	MHHNB11_AUTONOMIC_GANGLIA	0.82	1	0.0868	TRUE	0	1	0	2	1	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	LEPROTL1--AGFG1	5	0	LEPROTL1	1131	chr8:29953044:+	AGFG1	32888	chr2:228416675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0482	0	LEPROTL1->chr8:29952914-30034724:+,leptin_receptor_overlapping_transcript-like_1,AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0482	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	KANSL1--ARL17B	3	7	KANSL1	9741	chr17:44171926:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	27	14	0.27	0.42	0.0289	0.0675	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	MHHNB11_AUTONOMIC_GANGLIA	0.27	0.42	0.0964	TRUE	51	25	1	17	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	CPSF6--TP53BP1	4	1	CPSF6	11046	chr12:69656342:+	TP53BP1	30672	chr15:43762264:-	ONLY_REF_SPLICE	YES	9	12	0.36	0.29	0.0386	0.0096	GTEx_v2:{count=2;pct=0.02%;dist=Pituitary=1,Cells_-_EBV-transformed_lymphocytes=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	MHHNB11_AUTONOMIC_GANGLIA	0.29	0.36	0.0482	TRUE	0	0	0	3	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	OAZ1--PPP6R2	4	1	OAZ1	1259	chr19:2269743:+	PPP6R2	23324	chr22:50873395:+	ONLY_REF_SPLICE	YES	1159	20	0	0.2	0.0386	0.0096	GTEx_FI:{Blood=[count:2=pct:1.1],Lung=[count:1=pct:0.6],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=6;pct=0.07%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Artery_-_Tibial=1,Lung=1,Whole_Blood=1,Colon_-_Sigmoid=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2	MHHNB11_AUTONOMIC_GANGLIA	0	0.2	0.0482	FALSE	6	1	0	7	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	SNX11--PHF3	4	0	SNX11	5449	chr17:46190235:+	PHF3	27472	chr6:64412398:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	SNX11->chr17:46180719-46200436:+,sorting_nexin_11,PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	4	0	TIMM23B	1257	chr10:51371646:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0386	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0386	TRUE	0	0	0	10	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	ADD3--CEP44	3	3	ADD3	16411	chr10:111879322:+	CEP44	37206	chr4:175229840:+	ONLY_REF_SPLICE	YES	169	259	0.03	0.02	0.0289	0.0289	ADD3->Oncogene{Bushman},adducin_3,chr10:111756126-111895323:+,CEP44->centrosomal_protein_44,chr4:175204828-175254531:+	MHHNB11_AUTONOMIC_GANGLIA	0.02	0.03	0.0578	TRUE	0	0	0	1	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	FUBP1--CSNK1D	3	1	FUBP1	14090	chr1:78414840:-	CSNK1D	29683	chr17:80211120:-	ONLY_REF_SPLICE	YES	184	132	0.02	0.03	0.0289	0.0096	FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	MHHNB11_AUTONOMIC_GANGLIA	0.02	0.03	0.0385	TRUE	0	0	0	1	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	EIF1--RPL5	3	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0289	TRUE	0	0	0	39	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	FUBP1--IVNS1ABP	3	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0289	TRUE	1	4	0	16	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	MEG3--ATP5G2	3	0	MEG3	11399	chr14:101301845:+	ATP5G2	29068	chr12:54066414:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	MEG3->Oncogene{Bushman},chr14:101245747-101327368:+,maternally_expressed_3_(non-protein_coding),ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0289	FALSE	499	1288	110	792	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0193	0.0386	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MHHNB11_AUTONOMIC_GANGLIA	0.55	1	0.0579	FALSE	164	806	69	479	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	2	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.6	1	0.0193	0.0386	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MHHNB11_AUTONOMIC_GANGLIA	0.6	1	0.0579	FALSE	125	705	46	456	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	RP11-145O15.3--DLC1	3	0	RP11-145O15.3	1074	chr8:13462046:-	DLC1	11202	chr8:13259128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	NEIGHBORS[41999],RP11-145O15.3->chr8:13415166-13462119:-,DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0289	FALSE	2	3	0	1	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	RPS11P5--YBX1	3	0	RPS11P5	1030	chr12:133402316:+	YBX1	9792	chr1:43166619:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	RPS11P5->chr12:133402287-133402772:+,ribosomal_protein_S11_pseudogene_5,YBX1->Oncogene{Bushman},Y-box_binding_protein_1,chr1:43148098-43168020:+	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	3	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0289	TRUE	5	8	0	33	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	FUBP1--TP53BP1	2	3	FUBP1	14090	chr1:78414840:-	TP53BP1	32733	chr15:43762264:-	ONLY_REF_SPLICE	YES	184	12	0.03	0.29	0.0193	0.0289	FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	MHHNB11_AUTONOMIC_GANGLIA	0.03	0.29	0.0482	TRUE	0	0	0	2	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	TSPAN5--ADH4	2	3	TSPAN5	2090	chr4:99578691:-	ADH4	22838	chr4:100063931:-	ONLY_REF_SPLICE	YES	23	0	0.18	1	0.0193	0.0289	{Klijn_CCL:Lung=1,Brain=1},TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,ADH4->alcohol_dehydrogenase_4_(class_II),_pi_polypeptide,chr4:100044808-100078949:-	MHHNB11_AUTONOMIC_GANGLIA	0.18	1	0.0482	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	TPST1--GS1-124K5.4	2	2	TPST1	5907	chr7:65751696:+	GS1-124K5.4	15884	chr7:65960242:+	ONLY_REF_SPLICE	NO	7	5	0.36	0.44	0.0193	0.0193	NEIGHBORS[73163],TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,GS1-124K5.4->chr7:65958693-65960461:+	MHHNB11_AUTONOMIC_GANGLIA	0.36	0.44	0.0386	FALSE	17	126	3	8	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	TPST1--GS1-124K5.4	2	2	TPST1	6959	chr7:65817542:+	GS1-124K5.4	15884	chr7:65960242:+	ONLY_REF_SPLICE	YES	6	5	0.4	0.44	0.0193	0.0193	NEIGHBORS[73163],TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,GS1-124K5.4->chr7:65958693-65960461:+	MHHNB11_AUTONOMIC_GANGLIA	0.4	0.44	0.0386	FALSE	3	11	0	2	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	AC093642.5--XX-C2158C6.2	1	5	AC093642.5	6865	chr2:243064606:+	XX-C2158C6.2	15418	chr6:171054606:+	ONLY_REF_SPLICE	NO	5	0	0.55	1	0.0096	0.0482	AC093642.5->chr2:243030784-243102304:+,XX-C2158C6.2->chr6:171054606-171055065:+	MHHNB11_AUTONOMIC_GANGLIA	0.55	1	0.0578	TRUE	0	0	0	2	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	NOL4--CSNK1D	2	1	NOL4	14124	chr18:31673429:-	CSNK1D	35821	chr17:80211120:-	ONLY_REF_SPLICE	YES	10	132	0.23	0.02	0.0193	0.0096	NOL4->chr18:31431064-31804916:-,nucleolar_protein_4,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	MHHNB11_AUTONOMIC_GANGLIA	0.02	0.23	0.0289	TRUE	0	0	0	1	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	RP11-120D5.1--MID1	2	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	1	0.75	0.75	0.0193	0.0096	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MHHNB11_AUTONOMIC_GANGLIA	0.75	0.75	0.0289	FALSE	0	48	1	163	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	ACAD11--PDCD5	2	0	ACAD11	2121	chr3:132378447:-	PDCD5	31917	chr19:33078159:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ACAD11->acyl-CoA_dehydrogenase_family_member_11,chr3:132276982-132379567:-,PDCD5->chr19:33071974-33078358:+,programmed_cell_death_5	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	ADD3--EML5	2	0	ADD3	16411	chr10:111879322:+	EML5	37846	chr14:89193022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ADD3->Oncogene{Bushman},adducin_3,chr10:111756126-111895323:+,EML5->chr14:89078775-89259096:-,echinoderm_microtubule_associated_protein_like_5	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	CTD-2281E23.2--DLGAP2	2	0	CTD-2281E23.2	3418	chr8:1208883:+	DLGAP2	8510	chr8:1449532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GTEx_FI:{Testis=[count:34=pct:32.4],Brain=[count:24=pct:3.6],Pituitary=[count:4=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Thyroid=[count:2=pct:1.1]},CTD-2281E23.2->chr8:1054882-1212580:+,DLGAP2->chr8:1449532-1656642:+,discs_large_homolog_associated_protein_2	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	49	61	1	13	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	CTNNAL1--ADD3	2	0	CTNNAL1	5462	chr9:111753006:-	ADD3	41821	chr10:111883775:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	CTNNAL1->catenin_alpha_like_1,chr9:111704851-111775809:-,ADD3->Oncogene{Bushman},adducin_3,chr10:111756126-111895323:+	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	OAZ1--PALM	2	0	OAZ1	1259	chr19:2269743:+	PALM	12187	chr19:726138:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GTEx_FI:{Adipose_Tissue=[count:2=pct:0.7],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Heart=[count:1=pct:0.4]},GTEx_v2:{count=2;pct=0.02%;dist=Breast_-_Mammary_Tissue=1,Lung=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,PALM->chr19:708953-748329:+,paralemmin	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	5	0	0	1	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	PRDX2--NUBPL	2	0	PRDX2	3022	chr19:12910673:-	NUBPL	25206	chr14:32295835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	PRDX2->chr19:12907634-12912694:-,peroxiredoxin_2,NUBPL->chr14:31959162-32330430:+,nucleotide_binding_protein_like	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	PSMD12--EPRS	2	0	PSMD12	1216	chr17:65362528:-	EPRS	40119	chr1:220162165:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	PSMD12->chr17:65334032-65362743:-,proteasome_26S_subunit,_non-ATPase_12,EPRS->chr1:220141943-220220000:-,glutamyl-prolyl-tRNA_synthetase	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	RP11-758M4.1--PI15	2	0	RP11-758M4.1	2222	chr8:75525175:+	PI15	17893	chr8:75756216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	NEIGHBORS[1224],RP11-758M4.1->chr8:75512010-75735548:+,PI15->chr8:75736772-75767264:+,peptidase_inhibitor_15	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	FALSE	0	0	0	4	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	RPS3--TIMP2	2	0	RPS3	2292	chr11:75111821:+	TIMP2	18045	chr17:76853728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,TIMP2->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_2,chr17:76849059-76921469:-	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	SLC25A36--FAM120B	2	0	SLC25A36	5624	chr3:140682069:+	FAM120B	33287	chr6:170704575:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	0	1	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	TSPAN5--ADH4	1	4	TSPAN5	1484	chr4:99579297:-	ADH4	20152	chr4:100078949:-	ONLY_REF_SPLICE	NO	13	0	0.28	1	0.0096	0.0386	{Klijn_CCL:Lung=1,Brain=1},TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,ADH4->alcohol_dehydrogenase_4_(class_II),_pi_polypeptide,chr4:100044808-100078949:-	MHHNB11_AUTONOMIC_GANGLIA	0.28	1	0.0482	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	TSPAN5--ADH4	1	4	TSPAN5	3554	chr4:99495608:-	ADH4	22313	chr4:100064456:-	ONLY_REF_SPLICE	YES	24	0	0.17	1	0.0096	0.0386	{Klijn_CCL:Lung=1,Brain=1},TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,ADH4->alcohol_dehydrogenase_4_(class_II),_pi_polypeptide,chr4:100044808-100078949:-	MHHNB11_AUTONOMIC_GANGLIA	0.17	1	0.0482	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	UFL1--SNHG5	2	0	UFL1	13671	chr6:96990892:+	SNHG5	26749	chr6:86375865:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	UFL1->UFM1_specific_ligase_1,chr6:96969471-97003152:+,SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5	MHHNB11_AUTONOMIC_GANGLIA	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	TAF1D--RNPC3	1	2	TAF1D	6933	chr11:93470230:-	RNPC3	33735	chr1:104097656:+	ONLY_REF_SPLICE	NO	505	4	0.01	0.43	0.0096	0.0193	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=11;pct=0.13%;dist=Cells_-_EBV-transformed_lymphocytes=2,Stomach=1,Breast_-_Mammary_Tissue=1,Ovary=1,Pancreas=1,Uterus=1,Adipose_-_Subcutaneous=1,Muscle_-_Skeletal=1,Whole_Blood=1,Esophagus_-_Muscularis=1},TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-,RNPC3->RNA_binding_region_(RNP1,_RRM)_containing_3,chr1:104068313-104097861:+	MHHNB11_AUTONOMIC_GANGLIA	0.01	0.43	0.0289	FALSE	7	15	3	3	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	CNOT2--IRF2BP2	1	1	CNOT2	11745	chr12:70704797:+	IRF2BP2	36923	chr1:234743598:-	ONLY_REF_SPLICE	YES	28	172	0.07	0.01	0.0096	0.0096	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	MHHNB11_AUTONOMIC_GANGLIA	0.01	0.07	0.0192	FALSE	0	0	0	2	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	CNOT2--MYO5A	1	1	CNOT2	16342	chr12:70724249:+	MYO5A	54186	chr15:52672105:-	ONLY_REF_SPLICE	YES	45	1	0.04	0.67	0.0096	0.0096	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,MYO5A->chr15:52599480-52821247:-,myosin_VA	MHHNB11_AUTONOMIC_GANGLIA	0.04	0.67	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	CSRNP3--LRPPRC	1	1	CSRNP3	3353	chr2:166374471:+	LRPPRC	44654	chr2:44171033:-	ONLY_REF_SPLICE	NO	14	263	0.12	0.01	0.0096	0.0096	CSRNP3->chr2:166326157-166545917:+,cysteine_and_serine_rich_nuclear_protein_3,LRPPRC->chr2:44113647-44223144:-,leucine_rich_pentatricopeptide_repeat_containing	MHHNB11_AUTONOMIC_GANGLIA	0.01	0.12	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	HSPD1--TAF1D	1	1	HSPD1	5097	chr2:198361864:-	TAF1D	23088	chr11:93469470:-	ONLY_REF_SPLICE	YES	710	500	0	0	0.0096	0.0096	HSPD1->Oncogene{Bushman},chr2:198351305-198381461:-,heat_shock_protein_family_D_(Hsp60)_member_1,TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-	MHHNB11_AUTONOMIC_GANGLIA	0	0	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	KANSL1--ARL17B	1	1	KANSL1	7536	chr17:44248221:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	53	14	0.04	0.12	0.0096	0.0096	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	MHHNB11_AUTONOMIC_GANGLIA	0.04	0.12	0.0192	TRUE	16	5	0	9	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	LDLRAD3--PRR5L	1	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	30278	chr11:36415396:+	ONLY_REF_SPLICE	YES	30	0	0.06	1	0.0096	0.0096	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	MHHNB11_AUTONOMIC_GANGLIA	0.06	1	0.0192	FALSE	12	80	1	10	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	MEG3--ZADH2	1	1	MEG3	13267	chr14:101311870:+	ZADH2	28630	chr18:72914295:-	ONLY_REF_SPLICE	YES	2620	13	0	0.13	0.0096	0.0096	MEG3->Oncogene{Bushman},chr14:101245747-101327368:+,maternally_expressed_3_(non-protein_coding),ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	MHHNB11_AUTONOMIC_GANGLIA	0	0.13	0.0192	FALSE	1	0	0	1	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	MLLT4--HMGCS1	1	1	MLLT4	8223	chr6:168290006:+	HMGCS1	54970	chr5:43293075:-	ONLY_REF_SPLICE	YES	46	123	0.04	0.02	0.0096	0.0096	MLLT4->Oncogene{Bushman},chr6:168227602-168372703:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_4,HMGCS1->3-hydroxy-3-methylglutaryl-CoA_synthase_1,chr5:43289497-43313614:-	MHHNB11_AUTONOMIC_GANGLIA	0.02	0.04	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	PRC1--NPEPPS	1	1	PRC1	5231	chr15:91527248:-	NPEPPS	50403	chr17:45699134:+	ONLY_REF_SPLICE	NO	147	90	0.01	0.02	0.0096	0.0096	PRC1->chr15:91509270-91538859:-,protein_regulator_of_cytokinesis_1,NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+	MHHNB11_AUTONOMIC_GANGLIA	0.01	0.02	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	RPL3--HAND2	1	1	RPL3	3929	chr22:39713466:-	HAND2	14213	chr4:174448526:-	ONLY_REF_SPLICE	YES	5170	542	0	0	0.0096	0.0096	RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3,HAND2->chr4:174446120-174451380:-,heart_and_neural_crest_derivatives_expressed_2	MHHNB11_AUTONOMIC_GANGLIA	0	0	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	SBF2--RPUSD4	1	1	SBF2	29935	chr11:9875087:-	RPUSD4	68242	chr11:126074223:-	ONLY_REF_SPLICE	NO	48	59	0.04	0.03	0.0096	0.0096	SBF2->SET_binding_factor_2,chr11:9800214-10315754:-,RPUSD4->RNA_pseudouridylate_synthase_domain_containing_4,chr11:126071993-126081587:-	MHHNB11_AUTONOMIC_GANGLIA	0.03	0.04	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	SCAF4--TP53BP1	1	1	SCAF4	16796	chr21:33057362:-	TP53BP1	33951	chr15:43762264:-	ONLY_REF_SPLICE	YES	26	12	0.07	0.14	0.0096	0.0096	SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	MHHNB11_AUTONOMIC_GANGLIA	0.07	0.14	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	UBR3--KLHL23	1	1	UBR3	25040	chr2:170815036:+	KLHL23	57303	chr2:170597895:+	ONLY_REF_SPLICE	YES	48	73	0.04	0.03	0.0096	0.0096	LOCAL_REARRANGEMENT:+:[50469],UBR3->chr2:170683968-170940641:+,ubiquitin_protein_ligase_E3_component_n-recognin_3_(putative),KLHL23->chr2:170550998-170633499:+,kelch_like_family_member_23	MHHNB11_AUTONOMIC_GANGLIA	0.03	0.04	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000078
MHHNB11_AUTONOMIC_GANGLIA	ZNF227--PPM1D	1	1	ZNF227	3044	chr19:44717397:+	PPM1D	17735	chr17:58700882:+	ONLY_REF_SPLICE	YES	45	33	0.04	0.06	0.0096	0.0096	ZNF227->chr19:44711700-44741421:+,zinc_finger_protein_227,PPM1D->Oncogene{Bushman},chr17:58677544-58741849:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1D	MHHNB11_AUTONOMIC_GANGLIA	0.04	0.06	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000078
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRBV4-2--ZDHHC16	337	0	TRBV4-2	1565	chr7:142045816:+	ZDHHC16	8806	chr10:99212009:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	3.2577	0	TRBV4-2->T_cell_receptor_beta_variable_4-2,chr7:142045252-142045816:+,ZDHHC16->chr10:99205927-99217127:+,zinc_finger_DHHC-type_containing_16	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	3.2577	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	153	50	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	1.479	0.4833	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.9623	TRUE	508	994	45	981	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	98	213	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	23	0	0.93	1	0.9473	2.059	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	3.0063	FALSE	344	827	44	306	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	98	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.9473	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9473	TRUE	519	3926	326	965	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	13	213	MT-ND4	1213	chrM:10972:+	MT-ND4L	5376	chrM:10467:+	INCL_NON_REF_SPLICE	YES	41	0	0.85	1	0.1257	2.059	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	2.1847	FALSE	344	826	44	306	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	10	212	MT-ND4	1779	chrM:11538:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	5681	1	0.04	1	0.0967	2.0493	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	2.146	FALSE	344	827	44	306	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	63	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.609	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.609	TRUE	0	0	0	518	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	28	131	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	5800	1	0.03	0.99	0.2707	1.2663	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.99	1.537	FALSE	344	827	44	306	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	203	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	61	2	0.78	0.99	0.0773	1.9623	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.99	2.0396	FALSE	344	826	44	306	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	205	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	52	1	0.8	1	0.029	1.9817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	2.0107	FALSE	344	826	44	306	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	205	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	29	1	0.88	1	0.029	1.9817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	2.0107	FALSE	344	826	44	306	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	46	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4447	0.0483	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.493	FALSE	462	80	0	856	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	176	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	20	2	0.9	0.99	0.029	1.7013	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.99	1.7303	FALSE	344	826	44	306	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	145	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	18	3	0.89	0.98	0.0483	1.4017	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.98	1.45	FALSE	344	821	44	306	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP214--ABL1	36	19	NUP214	42338	chr9:134106156:+	ABL1	51696	chr9:133729451:+	ONLY_REF_SPLICE	YES	38	30	0.59	0.65	0.348	0.1837	chimerdb_omim:{T-cellacutelymphoblasticleukemia},chimerdb_pubmed{Tcell acute lymphoblastic leukemia (TALL),Tcell acute lymphoblastic leukemia,TALL,Tcell leukemia},NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	0.65	0.5317	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	134	MT-ND4	1199	chrM:10958:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	66	1	0.67	0.99	0.029	1.2953	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.99	1.3243	FALSE	344	826	44	306	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	34	0	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3287	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3287	FALSE	101	855	57	72	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	110	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	46	1	0.71	0.99	0.029	1.0633	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.99	1.0923	FALSE	344	826	44	306	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	21	34	AC104820.2	16783	chr2:182227645:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	22	989	0.71	0.05	0.203	0.3287	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.71	0.5317	FALSE	0	0	0	16	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	26	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2513	0.0483	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2996	FALSE	499	1288	110	792	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FASN--MT-ND2	27	0	FASN	17402	chr17:80038591:-	MT-ND2	23619	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.261	0	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.261	FALSE	5	0	0	5	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	18	18	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	23434	chr9:21995047:+	ONLY_REF_SPLICE	YES	59	9	0.38	0.8	0.174	0.174	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.8	0.348	FALSE	0	0	0	3	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	18	10	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	22	871	0.56	0.03	0.174	0.0967	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.56	0.2707	FALSE	0	0	0	19	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	12	31	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	7567	1	0.01	0.98	0.116	0.2997	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.98	0.4157	FALSE	344	827	44	306	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	17	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1643	0.0483	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2126	FALSE	499	1288	110	792	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	15	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.145	0.116	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.261	FALSE	499	1288	110	792	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	15	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.77	1	0.145	0.0193	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.1643	FALSE	292	1546	117	613	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FTH1--ACTB	14	0	FTH1	1222	chr11:61734911:-	ACTB	12534	chr7:5569289:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1353	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1353	TRUE	1	0	0	97	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	13	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1257	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1257	TRUE	46	1352	75	139	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	11	6	AC104820.2	6553	chr2:182091262:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	29	989	0.37	0.02	0.1063	0.058	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.37	0.1643	FALSE	0	0	0	11	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	12	1	MT-ND4	1495	chrM:11254:+	MT-ATP6	5811	chrM:8959:+	INCL_NON_REF_SPLICE	NO	16507	11679	0	0	0.116	0.0097	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1257	FALSE	21	137	19	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	29	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0.2803	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3286	FALSE	499	1288	110	792	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	11	0	MT-ND4	1477	chrM:11236:+	MT-ATP6	5883	chrM:9031:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1063	0	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1063	FALSE	21	137	19	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	6	20	MT-ND4	1773	chrM:11532:+	MT-ATP6	5320	chrM:8468:+	INCL_NON_REF_SPLICE	NO	14406	0	0	1	0.058	0.1933	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2513	FALSE	21	137	19	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	11	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1063	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1063	FALSE	0	0	0	189	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	10	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13048	19503	0	0	0.0967	0.029	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1257	FALSE	183	104	9	328	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	10	1	MT-ND4	1209	chrM:10968:+	MT-ATP6	5317	chrM:8465:+	INCL_NON_REF_SPLICE	NO	13127	0	0	1	0.0967	0.0097	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1064	FALSE	21	91	18	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	29	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	43	1	0.43	0.97	0.029	0.2803	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.97	0.3093	FALSE	344	826	44	306	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	9	3	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	29	871	0.29	0.01	0.087	0.029	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.29	0.116	FALSE	0	1	0	18	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	19	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0.1837	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.232	FALSE	499	1288	110	792	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	9	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.85	0.087	0.0193	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.1063	FALSE	344	821	44	306	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FTH1--ACTB	9	0	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.087	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.087	TRUE	1	0	0	97	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	8	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0773	0.0387	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.116	FALSE	462	80	0	856	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.087	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.087	TRUE	0	0	0	434	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FTH1--ACTB	8	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0773	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0773	TRUE	1	0	0	97	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	8	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0773	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0773	FALSE	0	24	0	62	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	3	20	MT-ND4	1828	chrM:11587:+	MT-ATP6	5375	chrM:8523:+	INCL_NON_REF_SPLICE	YES	13350	0	0	1	0.029	0.1933	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2223	FALSE	21	137	19	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	5	9	MT-ND4	2238	chrM:11997:+	MT-ATP6	5617	chrM:8765:+	INCL_NON_REF_SPLICE	NO	3230	11459	0	0	0.0483	0.087	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1353	FALSE	18	136	17	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	7	1	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	2763	1	0	0.0677	0.0097	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0774	FALSE	26	124	4	93	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	7	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0677	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0677	FALSE	183	104	9	328	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	7	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0677	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0677	FALSE	183	104	9	328	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	7	0	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0677	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0677	FALSE	101	855	57	72	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0677	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0677	FALSE	462	80	0	856	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	14	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.029	0.1353	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.1643	FALSE	499	1288	110	792	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	4	9	AC104820.2	8902	chr2:182127704:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	61	989	0.18	0.01	0.0387	0.087	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.18	0.1257	FALSE	0	0	0	3	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.058	FALSE	183	104	9	328	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	6	0	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.058	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.058	FALSE	101	855	57	72	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRDM16--SKI	6	0	PRDM16	1129	chr1:2985860:+	SKI	35669	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.058	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1]},PRDM16->Oncogene{Bushman},PR_domain_16,chr1:2985732-3355185:+,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.058	TRUE	2	0	0	4	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP214--ABL1	1	19	NUP214	42338	chr9:134106156:+	ABL1	51699	chr9:133729454:+	ONLY_REF_SPLICE	YES	38	29	0.34	0.41	0.0097	0.1837	chimerdb_omim:{T-cellacutelymphoblasticleukemia},chimerdb_pubmed{Tcell acute lymphoblastic leukemia (TALL),Tcell acute lymphoblastic leukemia,TALL,Tcell leukemia},NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.41	0.1934	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	3	10	AC104820.2	15551	chr2:182219070:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	84	989	0.13	0.01	0.029	0.0967	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.13	0.1257	FALSE	0	0	0	1	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	3	9	MT-ND4	1524	chrM:11283:+	MT-ATP6	5447	chrM:8595:+	INCL_NON_REF_SPLICE	YES	18398	5	0	0.71	0.029	0.087	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.71	0.116	FALSE	21	137	19	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	5	1	MT-ND4	1258	chrM:11017:+	MT-ATP6	5371	chrM:8519:+	INCL_NON_REF_SPLICE	YES	13530	0	0	1	0.0483	0.0097	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.058	FALSE	21	93	18	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	5	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	64	0	0.09	1	0.0483	0.0097	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.058	FALSE	272	151	14	158	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FTH1--ACTB	5	0	FTH1	1181	chr11:61734952:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0483	TRUE	1	0	0	97	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	5	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0483	TRUE	1	39	0	134	39	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0483	FALSE	183	104	9	328	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	5	0	MT-CO2	1279	chrM:7864:+	MT-ND2	5517	chrM:5302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0483	FALSE	105	46	5	21	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDS5A--RBM47	5	0	PDS5A	2517	chr4:39978060:-	RBM47	54297	chr4:40468716:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0483	0	PDS5A->PDS5_cohesin_associated_factor_A,chr4:39824483-39979576:-,RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0483	TRUE	0	1	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TFEB--TRERF1	5	0	TFEB	1910	chr6:41703088:-	TRERF1	37909	chr6:42196407:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0483	0	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0483	TRUE	0	0	0	2	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LEF1--COL25A1	4	3	LEF1	5980	chr4:109084724:-	COL25A1	29438	chr4:109895715:-	ONLY_REF_SPLICE	YES	2004	0	0	1	0.0387	0.029	LEF1->Oncogene{Bushman},chr4:108968701-109090112:-,lymphoid_enhancer_binding_factor_1,COL25A1->chr4:109731877-110223813:-,collagen_type_XXV_alpha_1	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0677	FALSE	0	0	0	1	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	4	3	MT-ND4	1773	chrM:11532:+	MT-ATP6	5779	chrM:8927:+	INCL_NON_REF_SPLICE	NO	14406	12487	0	0	0.0387	0.029	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0677	FALSE	21	137	19	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	4	3	MT-ND4	1281	chrM:11040:+	MT-ATP6	5320	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14290	0	0	1	0.0387	0.029	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0677	FALSE	21	93	18	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	4	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.21	1	0.0387	0.029	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.0677	FALSE	164	806	69	479	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	4	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.3	1	0.0387	0.029	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.0677	FALSE	125	705	46	456	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP6V1C1--AZIN1	4	2	ATP6V1C1	1163	chr8:104033453:+	AZIN1	27336	chr8:103870378:-	ONLY_REF_SPLICE	YES	94	429	0.06	0.01	0.0387	0.0193	GTEx&tcga_normals:1/3694=0.03%,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+,AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.058	FALSE	0	1	0	3	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	12372	17732	0	0	0.0387	0.0193	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.058	FALSE	183	104	9	328	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	4	1	AC104820.2	4356	chr2:181988707:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	1	989	0.83	0.01	0.0387	0.0097	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.83	0.0484	FALSE	0	0	0	3	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	4	1	MT-ND4	1452	chrM:11211:+	MT-ATP6	5779	chrM:8927:+	INCL_NON_REF_SPLICE	YES	16656	12487	0	0	0.0387	0.0097	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0484	FALSE	21	137	19	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	4	1	MT-ND4	1209	chrM:10968:+	MT-ATP6	5320	chrM:8468:+	INCL_NON_REF_SPLICE	NO	13127	0	0	1	0.0387	0.0097	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0484	FALSE	21	91	18	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	4	1	MT-ND4	1779	chrM:11538:+	MT-ATP6	5934	chrM:9082:+	INCL_NON_REF_SPLICE	YES	14212	5809	0	0	0.0387	0.0097	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0484	FALSE	21	137	19	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	4	1	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	27457	chr9:22046750:+	ONLY_REF_SPLICE	YES	59	15	0.08	0.25	0.0387	0.0097	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.25	0.0484	FALSE	0	3	0	6	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	5	1	0.5	0.0387	0.0097	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0484	FALSE	515	4851	409	746	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf25--DAZAP1	4	0	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0387	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	TRUE	6	7	1	24	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C22orf34--BRD1	4	0	C22orf34	1138	chr22:50051053:-	BRD1	33667	chr22:50171461:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0387	0	C22orf34->chr22:49808176-50051190:-,chromosome_22_open_reading_frame_34,BRD1->bromodomain_containing_1,chr22:50166931-50221160:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	TRUE	0	0	0	2	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FTH1--ACTB	4	0	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	TRUE	1	0	0	97	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	FALSE	344	821	44	306	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	FALSE	344	821	44	306	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	4	0	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	FALSE	101	855	57	72	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	4	0	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	FALSE	101	855	57	72	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	FALSE	499	1288	110	792	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0.0387	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0677	FALSE	462	80	0	856	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC17A5--RFX6	4	0	SLC17A5	10677	chr6:74320123:-	RFX6	30689	chr6:117243205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0387	0	SLC17A5->chr6:74303102-74363878:-,solute_carrier_family_17_member_5,RFX6->chr6:117198375-117253326:+,regulatory_factor_X6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YIPF6--BAZ1B	4	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0387	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0387	TRUE	1	23	1	24	8	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	3	1	MT-ND4	1205	chrM:10964:+	MT-ATP6	5320	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12889	0	0	1	0.029	0.0097	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0387	FALSE	21	91	18	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	3	1	MT-ND4	1211	chrM:10970:+	MT-ATP6	5635	chrM:8783:+	INCL_NON_REF_SPLICE	NO	13116	12898	0	0	0.029	0.0097	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0387	FALSE	21	91	18	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BSG--CTBP1	3	0	BSG	2405	chr19:572701:+	CTBP1	16163	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FTH1--ACTB	3	0	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	TRUE	1	0	0	97	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	3	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	TRUE	0	5	1	24	1	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	FALSE	183	104	9	328	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	3	0	MT-CO2	1345	chrM:7930:+	MT-ND2	5570	chrM:5355:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	FALSE	105	46	5	21	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-ND2	3	0	MT-CO2	1285	chrM:7870:+	MT-ND2	5522	chrM:5307:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	FALSE	105	46	5	21	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	3	0	MT-ND4	1144	chrM:10903:+	MT-ATP6	5499	chrM:8647:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	FALSE	21	91	18	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	3	0	MT-ND4	1514	chrM:11273:+	MT-ATP6	5917	chrM:9065:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	FALSE	21	137	19	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP6	3	0	MT-ND4	1471	chrM:11230:+	MT-ATP6	5934	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	FALSE	21	137	19	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	3	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	FALSE	101	855	57	72	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYO1G--MT-ND1	3	0	MYO1G	9552	chr7:45009351:-	MT-ND1	19821	chrM:3485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	MYO1G->chr7:45002261-45018697:-,myosin_IG,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	FALSE	0	0	0	1	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	TRUE	0	0	0	434	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRDM2--MT-ND4L	3	0	PRDM2	17152	chr1:14107322:+	MT-ND4L	28802	chrM:10485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.029	0	PRDM2->Oncogene{Bushman},PR_domain_2,chr1:14026693-14151574:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	FALSE	0	0	0	4	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0.0097	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	TRUE	62	24	1	171	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	2	0	AC104820.2	4356	chr2:181988707:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	FALSE	0	0	0	1	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSNK1G2--BTBD2	2	0	CSNK1G2	1230	chr19:1941417:+	BTBD2	22552	chr19:1997462:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	LOCAL_INVERSION:+:-:[4110],CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,BTBD2->BTB_domain_containing_2,chr19:1985447-2034880:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	3	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTB-55O6.12--PKN1	2	0	CTB-55O6.12	2373	chr19:14266291:+	PKN1	12625	chr19:14551955:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	CTB-55O6.12->chr19:14247991-14282079:+,PKN1->chr19:14543865-14582679:+,protein_kinase_N1	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAD1L1--TTYH3	2	0	MAD1L1	26516	chr7:2108829:-	TTYH3	45682	chr7:2686487:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	{Klijn_CCL:Skin=1},MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,TTYH3->chr7:2671585-2704436:+,tweety_family_member_3	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLE--FUS	2	0	POLE	1112	chr12:133263840:-	FUS	48055	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	2	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDF4--SLC7A6	2	0	SDF4	5392	chr1:1158624:-	SLC7A6	15900	chr16:68300496:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF519--PSMG3	2	0	ZNF519	2343	chr18:14124349:-	PSMG3	24141	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	3	AC104820.2	8902	chr2:182127704:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	NO	61	871	0.06	0	0.0097	0.029	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.0387	FALSE	0	0	0	11	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	2	AC104820.2	16783	chr2:182227645:+	ITGA4	27414	chr2:182343484:+	ONLY_REF_SPLICE	NO	22	743	0.12	0	0.0097	0.0193	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.12	0.029	FALSE	0	0	0	1	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MOB1B--GRSF1	1	2	MOB1B	17718	chr4:71863899:+	GRSF1	23879	chr4:71702031:-	ONLY_REF_SPLICE	YES	1	240	0.75	0.01	0.0097	0.0193	LOCAL_INVERSION:+:-:[62381],MOB1B->MOB_kinase_activator_1B,chr4:71768043-71888166:+,GRSF1->G-rich_RNA_sequence_binding_factor_1,chr4:71681499-71705662:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.75	0.029	FALSE	0	1	0	1	1	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	1	2	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	YES	35	29	0.08	0.09	0.0097	0.0193	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.09	0.029	TRUE	4	3	0	21	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TFDP2--ATP1B3	1	2	TFDP2	8454	chr3:141747421:-	ATP1B3	36619	chr3:141622462:+	ONLY_REF_SPLICE	YES	277	456	0.01	0.01	0.0097	0.0193	GTEx&tcga_normals:2/3694=0.05%,LOCAL_INVERSION:-:+:[17921],TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2,ATP1B3->ATPase_Na+/K+_transporting_subunit_beta_3,chr3:141594966-141645356:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.029	FALSE	0	0	0	1	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AREL1--ZSWIM8	1	1	AREL1	20159	chr14:75131539:-	ZSWIM8	37137	chr10:75553346:+	ONLY_REF_SPLICE	YES	44	4	0.04	0.33	0.0097	0.0097	AREL1->apoptosis_resistant_E3_ubiquitin_protein_ligase_1,chr14:75120140-75179818:-,ZSWIM8->chr10:75545340-75561551:+,zinc_finger_SWIM-type_containing_8	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.33	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRAF--TMEM178B	1	1	BRAF	14964	chr7:140476712:-	TMEM178B	34216	chr7:140912391:+	ONLY_REF_SPLICE	NO	26	0	0.07	1	0.0097	0.0097	BRAF->ArcherDX_panel,B-Raf_proto-oncogene,_serine/threonine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:140419127-140624564:-,TMEM178B->chr7:140774032-141180180:+,transmembrane_protein_178B	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CASC5--KNSTRN	1	1	CASC5	1373	chr15:40886590:+	KNSTRN	39603	chr15:40679360:+	ONLY_REF_SPLICE	YES	24	293	0.08	0.01	0.0097	0.0097	CASC5->Oncogene{Bushman},cancer_susceptibility_candidate_5,chr15:40886218-40956540:+,KNSTRN->chr15:40674922-40686447:+,kinetochore-localized_astrin/SPAG5_binding_protein	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.08	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GDAP1--RP11-758M4.1	1	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	66	0	0.03	1	0.0097	0.0097	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0194	TRUE	7	28	0	43	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	5	1	0.29	0.67	0.0097	0.0097	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.67	0.0194	FALSE	25	145	6	90	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PISD--DRG1	1	1	PISD	3545	chr22:32044087:-	DRG1	23267	chr22:31806998:+	ONLY_REF_SPLICE	YES	55	255	0.04	0.01	0.0097	0.0097	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[89751],PISD->chr22:32014477-32058418:-,phosphatidylserine_decarboxylase,DRG1->chr22:31795509-31924726:+,developmentally_regulated_GTP_binding_protein_1	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PKN3--SET	1	1	PKN3	1417	chr9:131465218:+	SET	20300	chr9:131453449:+	ONLY_REF_SPLICE	YES	10	335	0.17	0.01	0.0097	0.0097	LOCAL_REARRANGEMENT:+:[6123],PKN3->chr9:131464802-131483197:+,protein_kinase_N3,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.17	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM33--PAXIP1	1	1	RBM33	12740	chr7:155511137:+	PAXIP1	37803	chr7:154790494:-	ONLY_REF_SPLICE	NO	75	20	0.03	0.09	0.0097	0.0097	RBM33->RNA_binding_motif_protein_33,chr7:155437145-155574179:+,PAXIP1->PAX_interacting_protein_1,chr7:154735397-154794794:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.09	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM33--PAXIP1	1	1	RBM33	19167	chr7:155538296:+	PAXIP1	37803	chr7:154790494:-	ONLY_REF_SPLICE	YES	77	20	0.03	0.09	0.0097	0.0097	RBM33->RNA_binding_motif_protein_33,chr7:155437145-155574179:+,PAXIP1->PAX_interacting_protein_1,chr7:154735397-154794794:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.09	0.0194	TRUE	0	0	0	1	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--TIAL1	1	1	SF1	3289	chr11:64543970:-	TIAL1	27274	chr10:121336262:-	ONLY_REF_SPLICE	YES	377	210	0.01	0.01	0.0097	0.0097	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPIN1--PTMA	1	1	SPIN1	1120	chr9:91003453:+	PTMA	22115	chr2:232576058:+	ONLY_REF_SPLICE	YES	24	6867	0.08	0	0.0097	0.0097	SPIN1->chr9:91003334-91093609:+,spindlin_1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	1	1	SPON2	4412	chr4:1195057:-	CTBP1	23049	chr4:1232125:-	ONLY_REF_SPLICE	NO	35	176	0.05	0.01	0.0097	0.0097	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.0194	FALSE	2	0	0	8	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRMU--GTSE1	1	1	TRMU	4922	chr22:46731743:+	GTSE1	21742	chr22:46704047:+	ONLY_REF_SPLICE	NO	30	152	0.06	0.01	0.0097	0.0097	LOCAL_REARRANGEMENT:+:[65],TRMU->chr22:46726772-46753237:+,tRNA_5-methylaminomethyl-2-thiouridylate_methyltransferase,GTSE1->G2_and_S-phase_expressed_1,chr22:46692638-46726707:+	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBXN6--CHAF1A	1	1	UBXN6	5156	chr19:4452361:-	CHAF1A	23100	chr19:4430546:+	ONLY_REF_SPLICE	NO	103	202	0.02	0.01	0.0097	0.0097	NEIGHBORS_OVERLAP:-:+:[19],UBXN6->UBX_domain_protein_6,chr19:4444996-4457819:-,CHAF1A->chr19:4402659-4445015:+,chromatin_assembly_factor_1_subunit_A	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--XPO1	1	1	USP34	5010	chr2:61621988:-	XPO1	80582	chr2:61761038:-	ONLY_REF_SPLICE	YES	38	341	0.05	0.01	0.0097	0.0097	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000519
PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFAS1--ANKLE2	1	1	ZFAS1	2031	chr20:47895745:+	ANKLE2	15337	chr12:133331719:-	ONLY_REF_SPLICE	YES	780	98	0	0.02	0.0097	0.0097	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	PEER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000519
HS616T_FIBROBLAST	TIMM23B--LINC00843	140	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5772	0.383	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS616T_FIBROBLAST	1	1	1.9602	TRUE	508	994	45	981	0	FALSE	ACH-000063
HS616T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	102	78	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	0	24	1	0.88	1.1491	0.8787	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS616T_FIBROBLAST	0.88	1	2.0278	FALSE	65	26	15	9	0	FALSE	ACH-000063
HS616T_FIBROBLAST	TIMM23--RP11-464F9.1	85	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	242	2	0.27	0.98	0.9576	0.0338	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS616T_FIBROBLAST	0.27	0.98	0.9914	TRUE	519	3926	326	965	0	FALSE	ACH-000063
HS616T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	41	75	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	0	27	1	0.81	0.4619	0.8449	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS616T_FIBROBLAST	0.81	1	1.3068	FALSE	65	26	15	9	0	FALSE	ACH-000063
HS616T_FIBROBLAST	OR51S1--TP53I11	36	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4056	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HS616T_FIBROBLAST	1	1	0.4056	TRUE	402	216	10	229	0	FALSE	ACH-000063
HS616T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	5	79	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	14416	chr11:121987031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0563	0.89	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS616T_FIBROBLAST	1	1	0.9463	FALSE	8	1	0	5	0	FALSE	ACH-000063
HS616T_FIBROBLAST	PLXDC1--TAF13	23	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2591	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS616T_FIBROBLAST	1	1	0.2591	TRUE	7	10	0	216	0	FALSE	ACH-000063
HS616T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	17	24	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	1	24	0.98	0.63	0.1915	0.2704	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS616T_FIBROBLAST	0.63	0.98	0.4619	FALSE	40	10	5	8	0	FALSE	ACH-000063
HS616T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	19	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	3	1	0.91	0.214	0.1465	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS616T_FIBROBLAST	0.91	1	0.3605	FALSE	515	4851	409	746	0	FALSE	ACH-000063
HS616T_FIBROBLAST	MT-ND6--MT-TE	21	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2366	0.0225	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS616T_FIBROBLAST	1	1	0.2591	FALSE	499	1288	110	792	0	FALSE	ACH-000063
HS616T_FIBROBLAST	FBLN2--MT-CO1	16	6	FBLN2	10496	chr3:13655634:+	MT-CO1	26175	chrM:5916:+	INCL_NON_REF_SPLICE	YES	1868	0	0.01	1	0.1803	0.0676	FBLN2->chr3:13573824-13679922:+,fibulin_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS616T_FIBROBLAST	0.01	1	0.2479	FALSE	0	0	0	7	0	FALSE	ACH-000063
HS616T_FIBROBLAST	RP11-680G10.1--GSE1	11	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.91	0.1239	0.1014	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS616T_FIBROBLAST	0.91	1	0.2253	TRUE	458	1351	185	561	0	FALSE	ACH-000063
HS616T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	7	22	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	1	27	0.97	0.52	0.0789	0.2478	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS616T_FIBROBLAST	0.52	0.97	0.3267	FALSE	40	10	5	8	0	FALSE	ACH-000063
HS616T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	8	17	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0901	0.1915	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS616T_FIBROBLAST	1	1	0.2816	FALSE	407	2205	196	549	0	FALSE	ACH-000063
HS616T_FIBROBLAST	MT-ND6--MT-TE	8	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.79	1	0.0901	0.0789	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS616T_FIBROBLAST	0.79	1	0.169	FALSE	499	1288	110	792	0	FALSE	ACH-000063
HS616T_FIBROBLAST	RP11-680G10.1--GSE1	9	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	6	1	0.67	0.1014	0.0338	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS616T_FIBROBLAST	0.67	1	0.1352	TRUE	465	1949	224	605	0	FALSE	ACH-000063
HS616T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	5	15	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	3	0.83	0.87	0.0563	0.169	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS616T_FIBROBLAST	0.83	0.87	0.2253	FALSE	467	2173	244	435	0	FALSE	ACH-000063
HS616T_FIBROBLAST	MT-CO1--COL3A1	8	0	MT-CO1	1605	chrM:6508:+	COL3A1	28798	chr2:189872273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0901	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	HS616T_FIBROBLAST	1	1	0.0901	FALSE	0	0	0	12	0	FALSE	ACH-000063
HS616T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	2	24	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	14416	chr11:121987031:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.0225	0.2704	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS616T_FIBROBLAST	0.96	1	0.2929	FALSE	3	0	0	3	0	FALSE	ACH-000063
HS616T_FIBROBLAST	MT-ND6--MT-TE	7	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0.0225	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS616T_FIBROBLAST	1	1	0.1014	FALSE	499	1288	110	792	0	FALSE	ACH-000063
HS616T_FIBROBLAST	PRR16--CTD-2334D19.1	6	6	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	33	0	0.27	1	0.0676	0.0676	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS616T_FIBROBLAST	0.27	1	0.1352	FALSE	21	45	1	60	0	FALSE	ACH-000063
HS616T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	17	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0113	0.1915	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS616T_FIBROBLAST	1	1	0.2028	FALSE	275	511	55	178	0	FALSE	ACH-000063
HS616T_FIBROBLAST	CTGF--ACTB	5	0	CTGF	1136	chr6:132272378:-	ACTB	10623	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS616T_FIBROBLAST	1	1	0.0563	TRUE	0	0	0	9	0	TRUE	ACH-000063
HS616T_FIBROBLAST	PRR16--CTD-2334D19.1	4	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	90	0	0.07	1	0.0451	0.0338	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS616T_FIBROBLAST	0.07	1	0.0789	FALSE	56	216	12	147	0	FALSE	ACH-000063
HS616T_FIBROBLAST	CTB-113P19.1--FTL	4	2	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	5	0	0.55	1	0.0451	0.0225	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	HS616T_FIBROBLAST	0.55	1	0.0676	TRUE	0	2	0	13	2	TRUE	ACH-000063
HS616T_FIBROBLAST	STK3--RP11-410L14.2	4	0	STK3	12201	chr8:99786967:-	RP11-410L14.2	40104	chr8:100009194:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0451	0	LOCAL_REARRANGEMENT:-:[53936],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,RP11-410L14.2->chr8:100008991-100025272:-	HS616T_FIBROBLAST	1	1	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000063
HS616T_FIBROBLAST	CALD1--EXOC4	3	0	CALD1	6757	chr7:134528722:+	EXOC4	66854	chr7:133682245:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},CALD1->caldesmon_1,chr7:134429003-134655479:+,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	HS616T_FIBROBLAST	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000063
HS616T_FIBROBLAST	COL1A2--COL6A1	3	0	COL1A2	19624	chr7:94047143:+	COL6A1	44309	chr21:47411924:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS616T_FIBROBLAST	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000063
HS616T_FIBROBLAST	RABAC1--LGALS1	3	0	RABAC1	3339	chr19:42461204:-	LGALS1	6767	chr22:38071671:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	RABAC1->Rab_acceptor_1,chr19:42460833-42463542:-,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	HS616T_FIBROBLAST	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000063
HS616T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	2	2	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	28009	chr11:121899553:-	ONLY_REF_SPLICE	YES	0	5	1	0.44	0.0225	0.0225	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS616T_FIBROBLAST	0.44	1	0.045	FALSE	4	0	0	2	0	FALSE	ACH-000063
HS616T_FIBROBLAST	LMNA--LAMTOR2	2	1	LMNA	8776	chr1:156085065:+	LAMTOR2	23966	chr1:156025054:+	ONLY_REF_SPLICE	YES	1386	258	0	0.01	0.0225	0.0113	LOCAL_REARRANGEMENT:+:[24063],LMNA->chr1:156052364-156109880:+,lamin_A/C,LAMTOR2->chr1:156024543-156028301:+,late_endosomal/lysosomal_adaptor,_MAPK_and_MTOR_activator_2	HS616T_FIBROBLAST	0	0.01	0.0338	FALSE	0	0	0	1	0	FALSE	ACH-000063
HS616T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	1	5	RP11-820L6.1	6183	chr11:122162992:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	10	24	0.38	0.2	0.0113	0.0563	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS616T_FIBROBLAST	0.2	0.38	0.0676	FALSE	43	23	12	6	0	FALSE	ACH-000063
HS616T_FIBROBLAST	ZC3HAV1L--CHMP1A	2	0	ZC3HAV1L	4872	chr7:138711454:-	CHMP1A	13652	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Thyroid=[count:3=pct:1.7],Colon=[count:2=pct:1.0],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Lung=[count:1=pct:0.6],Skin=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},GTEx_v2:{count=21;pct=0.24%;dist=Thyroid=7,Breast_-_Mammary_Tissue=2,Lung=2,Adipose_-_Visceral_(Omentum)=2,Cells_-_Transformed_fibroblasts=2,Ovary=1,Minor_Salivary_Gland=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},ZC3HAV1L->chr7:138710452-138720775:-,zinc_finger_CCCH-type_containing,_antiviral_1_like,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HS616T_FIBROBLAST	1	1	0.0225	TRUE	9	17	1	3	0	FALSE	ACH-000063
HS616T_FIBROBLAST	COL5A1--COL6A2	1	1	COL5A1	60960	chr9:137722022:+	COL6A2	72807	chr21:47531893:+	ONLY_REF_SPLICE	YES	1666	2506	0	0	0.0113	0.0113	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},HGNC_GENEFAM,PROTCLUST,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HS616T_FIBROBLAST	0	0	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000063
HS616T_FIBROBLAST	COL6A1--COL3A1	1	1	COL6A1	6926	chr21:47409566:+	COL3A1	30474	chr2:189856213:+	ONLY_REF_SPLICE	YES	721	3304	0	0	0.0113	0.0113	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	HS616T_FIBROBLAST	0	0	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000063
HS616T_FIBROBLAST	CRIM1--FEZ2	1	1	CRIM1	18863	chr2:36749456:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	703	225	0	0.01	0.0113	0.0113	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	HS616T_FIBROBLAST	0	0.01	0.0226	FALSE	2	2	0	15	0	FALSE	ACH-000063
HS616T_FIBROBLAST	ITGB5--UMPS	1	1	ITGB5	17016	chr3:124527869:-	UMPS	32841	chr3:124453940:+	ONLY_REF_SPLICE	NO	933	65	0	0.03	0.0113	0.0113	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Substantia_nigra=1},LOCAL_INVERSION:-:+:[16755],ITGB5->chr3:124480795-124620265:-,integrin_subunit_beta_5,UMPS->chr3:124449213-124464040:+,uridine_monophosphate_synthetase	HS616T_FIBROBLAST	0	0.03	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000063
HS616T_FIBROBLAST	LPP--UBXN4	1	1	LPP	19670	chr3:188327632:+	UBXN4	56704	chr2:136505837:+	ONLY_REF_SPLICE	YES	30	178	0.06	0.01	0.0113	0.0113	LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+	HS616T_FIBROBLAST	0.01	0.06	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000063
HS616T_FIBROBLAST	PNPLA8--COG5	1	1	PNPLA8	3915	chr7:108166473:-	COG5	33958	chr7:106964966:-	ONLY_REF_SPLICE	YES	10	59	0.17	0.03	0.0113	0.0113	PNPLA8->chr7:108110866-108210110:-,patatin_like_phospholipase_domain_containing_8,COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5	HS616T_FIBROBLAST	0.03	0.17	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000063
HS616T_FIBROBLAST	ZNF292--RNGTT	1	1	ZNF292	2606	chr6:87865477:+	RNGTT	40896	chr6:89511351:-	ONLY_REF_SPLICE	YES	20	31	0.09	0.06	0.0113	0.0113	ZNF292->chr6:87862551-87973914:+,zinc_finger_protein_292,RNGTT->RNA_guanylyltransferase_and_5'-phosphatase,chr6:89319985-89673348:-	HS616T_FIBROBLAST	0.06	0.09	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000063
KG1C_CENTRAL_NERVOUS_SYSTEM	SERPINE1--BOD1L1	56	0	SERPINE1	9423	chr7:100781340:+	BOD1L1	27424	chr4:13606456:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5922	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,BOD1L1->biorientation_of_chromosomes_in_cell_division_1_like_1,chr4:13570362-13629347:-	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.5922	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	42	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4441	0.1692	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.6133	TRUE	508	994	45	981	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	HSPBP1--GRK5	44	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4653	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.4653	TRUE	1	39	0	134	39	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	28	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2961	0.0423	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.3384	FALSE	462	80	0	856	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	AGAP1--PARD3B	20	4	AGAP1	26208	chr2:236957925:+	PARD3B	62463	chr2:206165254:+	ONLY_REF_SPLICE	YES	6	1	0.8	0.96	0.2115	0.0423	AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta	KG1C_CENTRAL_NERVOUS_SYSTEM	0.8	0.96	0.2538	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	MB21D2--FGF12	17	3	MB21D2	1532	chr3:192635419:-	FGF12	17792	chr3:191888445:-	ONLY_REF_SPLICE	YES	6	8	0.77	0.71	0.1798	0.0317	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	KG1C_CENTRAL_NERVOUS_SYSTEM	0.71	0.77	0.2115	FALSE	0	1	0	1	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	C7orf10--RALA	17	2	C7orf10	1145	chr7:40174719:+	RALA	34781	chr7:39745722:+	ONLY_REF_SPLICE	YES	5	96	0.79	0.17	0.1798	0.0211	C7orf10->chr7:40174575-40900362:+,RALA->Oncogene{Bushman},chr7:39663082-39747723:+,v-ral_simian_leukemia_viral_oncogene_homolog_A_(ras_related)	KG1C_CENTRAL_NERVOUS_SYSTEM	0.17	0.79	0.2009	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	16	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	127	3	0.12	0.85	0.1692	0.0106	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KG1C_CENTRAL_NERVOUS_SYSTEM	0.12	0.85	0.1798	TRUE	519	3926	326	965	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	ZBTB20--TIGIT	14	5	ZBTB20	6598	chr3:114693213:-	TIGIT	50500	chr3:114014392:+	ONLY_REF_SPLICE	YES	3	4	0.86	0.83	0.148	0.0529	LOCAL_INVERSION:-:+:[27806],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,TIGIT->T-cell_immunoreceptor_with_Ig_and_ITIM_domains,chr3:113995760-114029135:+	KG1C_CENTRAL_NERVOUS_SYSTEM	0.83	0.86	0.2009	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	14	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.148	0.0317	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KG1C_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.1797	FALSE	292	1546	117	613	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	14	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.148	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.148	FALSE	499	1288	110	792	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	12	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1269	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.1269	FALSE	462	80	0	856	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	9	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0952	0.0846	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.1798	FALSE	515	4851	409	746	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	9	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0952	0.0317	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KG1C_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.1269	FALSE	499	1288	110	792	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	IL20RB--LPP	8	3	IL20RB	2403	chr3:136677043:+	LPP	46811	chr3:188583988:+	ONLY_REF_SPLICE	YES	1	14	0.92	0.44	0.0846	0.0317	IL20RB->chr3:136665072-136729927:+,interleukin_20_receptor_subunit_beta,LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+	KG1C_CENTRAL_NERVOUS_SYSTEM	0.44	0.92	0.1163	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	8	3	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	6	0.92	0.65	0.0846	0.0317	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	KG1C_CENTRAL_NERVOUS_SYSTEM	0.65	0.92	0.1163	FALSE	141	264	50	91	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	7	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	26	13	0.32	0.48	0.074	0.0529	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KG1C_CENTRAL_NERVOUS_SYSTEM	0.32	0.48	0.1269	TRUE	267	562	48	632	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	ZBTB20--TIGIT	7	5	ZBTB20	6598	chr3:114693213:-	TIGIT	48955	chr3:114012847:+	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.074	0.0529	LOCAL_INVERSION:-:+:[27806],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,TIGIT->T-cell_immunoreceptor_with_Ig_and_ITIM_domains,chr3:113995760-114029135:+	KG1C_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.1269	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	8	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0846	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0846	FALSE	499	1288	110	792	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	7	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	25	13	0.29	0.43	0.074	0.0317	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KG1C_CENTRAL_NERVOUS_SYSTEM	0.29	0.43	0.1057	TRUE	267	562	48	632	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	7	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	19	1	0.34	0.91	0.074	0.0317	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KG1C_CENTRAL_NERVOUS_SYSTEM	0.34	0.91	0.1057	FALSE	125	705	46	456	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	RSRC1--MLF1	7	2	RSRC1	14780	chr3:158072697:+	MLF1	29503	chr3:158310223:+	ONLY_REF_SPLICE	YES	9	27	0.5	0.25	0.074	0.0211	NEIGHBORS[25433],RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MLF1->Oncogene{Bushman},chr3:158288952-158325041:+,myeloid_leukemia_factor_1	KG1C_CENTRAL_NERVOUS_SYSTEM	0.25	0.5	0.0951	FALSE	0	0	0	1	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	BBX--LINC00882	6	3	BBX	4463	chr3:107245245:+	LINC00882	54285	chr3:106646841:-	ONLY_REF_SPLICE	YES	17	0	0.35	1	0.0634	0.0317	BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,LINC00882->chr3:106555658-106959488:-,long_intergenic_non-protein_coding_RNA_882	KG1C_CENTRAL_NERVOUS_SYSTEM	0.35	1	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PPM1A--RP11-305B6.3	6	0	PPM1A	2705	chr14:60716395:+	RP11-305B6.3	27851	chr14:44518710:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0634	0	PPM1A->chr14:60712470-60765805:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1A,RP11-305B6.3->chr14:44464984-44853748:-	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	5	4	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	6	0.9	0.6	0.0529	0.0423	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	KG1C_CENTRAL_NERVOUS_SYSTEM	0.6	0.9	0.0952	FALSE	49	120	16	70	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	4	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0.0846	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.1269	FALSE	407	2205	196	549	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	5	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0529	0.0106	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0635	TRUE	458	1351	185	561	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	CPNE4--ATP2B2	5	0	CPNE4	7378	chr3:131753411:-	ATP2B2	36917	chr3:10491546:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0529	0	CPNE4->chr3:131252399-132004254:-,copine_4,ATP2B2->ATPase_plasma_membrane_Ca2+_transporting_2,chr3:10365707-10749716:-	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0529	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	4	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	36	1	0.18	0.89	0.0423	0.0423	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KG1C_CENTRAL_NERVOUS_SYSTEM	0.18	0.89	0.0846	FALSE	164	806	69	479	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PDE6B--PPP2R2D	5	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0529	TRUE	7	65	3	22	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	RP11-353N4.6--RP11-403I13.4	5	0	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0529	0	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0529	TRUE	61	154	6	19	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0529	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0529	TRUE	465	1949	224	605	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	3	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0423	0.0317	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KG1C_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.074	FALSE	499	1288	110	792	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	3	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0317	0.074	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.1057	FALSE	462	80	0	856	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	IL20RB--LPP	3	6	IL20RB	5990	chr3:136701192:+	LPP	46811	chr3:188583988:+	ONLY_REF_SPLICE	YES	3	14	0.75	0.39	0.0317	0.0634	IL20RB->chr3:136665072-136729927:+,interleukin_20_receptor_subunit_beta,LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+	KG1C_CENTRAL_NERVOUS_SYSTEM	0.39	0.75	0.0951	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	4	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	24	0	0.2	1	0.0423	0.0211	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	KG1C_CENTRAL_NERVOUS_SYSTEM	0.2	1	0.0634	FALSE	56	216	12	147	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	SH3PXD2B--FBXW11	4	1	SH3PXD2B	4480	chr5:171821567:-	FBXW11	30909	chr5:171341409:-	ONLY_REF_SPLICE	YES	20	29	0.2	0.15	0.0423	0.0106	SH3PXD2B->SH3_and_PX_domains_2B,chr5:171752185-171881527:-,FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-	KG1C_CENTRAL_NERVOUS_SYSTEM	0.15	0.2	0.0529	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PELI2--FERMT2	4	0	PELI2	1924	chr14:56585455:+	FERMT2	22402	chr14:53360145:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	PELI2->chr14:56584532-56768244:+,pellino_E3_ubiquitin_protein_ligase_family_member_2,FERMT2->chr14:53323986-53419153:-,fermitin_family_member_2	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	RFTN1--RP11-362A9.3	4	0	RFTN1	15846	chr3:16399439:-	RP11-362A9.3	25819	chr3:152175962:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,RP11-362A9.3->chr3:152175548-152214602:-	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	BBX--LINC00882	3	3	BBX	4463	chr3:107245245:+	LINC00882	53243	chr3:106758963:-	ONLY_REF_SPLICE	YES	17	1	0.26	0.86	0.0317	0.0317	BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,LINC00882->chr3:106555658-106959488:-,long_intergenic_non-protein_coding_RNA_882	KG1C_CENTRAL_NERVOUS_SYSTEM	0.26	0.86	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0317	0.0211	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KG1C_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.0528	FALSE	499	1288	110	792	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PARD3B--PLCL1	3	1	PARD3B	4816	chr2:205830046:+	PLCL1	56603	chr2:199220019:+	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0317	0.0106	PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta,PLCL1->Oncogene{Bushman},chr2:198669426-199437305:+,phospholipase_C_like_1	KG1C_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	ZBTB20--TIGIT	2	5	ZBTB20	6598	chr3:114693213:-	TIGIT	48262	chr3:114012154:+	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0211	0.0529	LOCAL_INVERSION:-:+:[27806],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,TIGIT->T-cell_immunoreceptor_with_Ig_and_ITIM_domains,chr3:113995760-114029135:+	KG1C_CENTRAL_NERVOUS_SYSTEM	0.7	1	0.074	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	FLYWCH1--FAM127A	3	0	FLYWCH1	13112	chr16:2986332:+	FAM127A	24685	chrX:134166942:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	FLYWCH1->FLYWCH-type_zinc_finger_1,chr16:2961938-3001209:+,FAM127A->chrX:134166333-134167576:+,family_with_sequence_similarity_127_member_A	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	RP11-353N4.6--RP11-403I13.4	3	0	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0317	TRUE	30	67	4	15	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	SERPINE1--CD151	3	0	SERPINE1	1101	chr7:100770470:+	CD151	13780	chr11:832992:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	SH3PXD2B--FBXW11	2	1	SH3PXD2B	4480	chr5:171821567:-	FBXW11	31972	chr5:171337801:-	ONLY_REF_SPLICE	YES	20	21	0.13	0.12	0.0211	0.0106	SH3PXD2B->SH3_and_PX_domains_2B,chr5:171752185-171881527:-,FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-	KG1C_CENTRAL_NERVOUS_SYSTEM	0.12	0.13	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	ABI1--FNTA	2	0	ABI1	1341	chr10:27149676:-	FNTA	23442	chr8:42914235:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,FNTA->chr8:42889337-42940931:+,farnesyltransferase,_CAAX_box,_alpha	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	AL132709.5--ARMC7	2	0	AL132709.5	8473	chr14:101415933:+	ARMC7	23893	chr17:73124772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	AL132709.5->chr14:101403738-101426536:+,ARMC7->armadillo_repeat_containing_7,chr17:73106047-73126360:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	APPL1--NFYB	2	0	APPL1	1201	chr3:57261965:+	NFYB	30436	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	APPL1->adaptor_protein,_phosphotyrosine_interacting_with_PH_domain_and_leucine_zipper_1,chr3:57261765-57307496:+,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	CTNNA1--KDM3B	2	0	CTNNA1	17161	chr5:138163407:+	KDM3B	42441	chr5:137708363:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,KDM3B->chr5:137688285-137772717:+,lysine_demethylase_3B	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	1	0	1	1	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	DFNB31--CTNNAL1	2	0	DFNB31	5921	chr9:117228547:-	CTNNAL1	19858	chr9:111761536:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	DFNB31->chr9:117164360-117267730:-,deafness,_autosomal_recessive_31,CTNNAL1->catenin_alpha_like_1,chr9:111704851-111775809:-	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	EGFR--DBNL	2	0	EGFR	19318	chr7:55233130:+	DBNL	46839	chr7:44089824:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,DBNL->chr7:44084239-44109055:+,drebrin_like	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	FAM129B--ENG	2	0	FAM129B	11445	chr9:130272425:-	ENG	28102	chr9:130581111:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	FAM129B->chr9:130267618-130341268:-,family_with_sequence_similarity_129_member_B,ENG->chr9:130577291-130617035:-,endoglin	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	FASTKD5--SYNDIG1	2	0	FASTKD5	1132	chr20:3140412:-	SYNDIG1	9430	chr20:24523656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	FASTKD5->FAST_kinase_domains_5,chr20:3127165-3140543:-,SYNDIG1->chr20:24449835-24647252:+,synapse_differentiation_inducing_1	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	FBXO16--HAT1	2	0	FBXO16	9368	chr8:28304688:-	HAT1	27096	chr2:172782047:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	FBXO16->F-box_protein_16,chr8:28205804-28347835:-,HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	KNDC1--ARIH1	2	0	KNDC1	4322	chr10:134981816:+	ARIH1	38944	chr15:72847612:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	KNDC1->chr10:134973951-135039916:+,kinase_non-catalytic_C-lobe_domain_(KIND)_containing_1,ARIH1->ariadne_RBR_E3_ubiquitin_protein_ligase_1,chr15:72766667-72879692:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	LYSMD3--NAPEPLD	2	0	LYSMD3	3487	chr5:89820852:-	NAPEPLD	14939	chr7:102769239:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LYSMD3->LysM_domain_containing_3,chr5:89811428-89825401:-,NAPEPLD->N-acyl_phosphatidylethanolamine_phospholipase_D,chr7:102740223-102790007:-	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	MAP4K5--RSRC2	2	0	MAP4K5	33360	chr14:50889839:-	RSRC2	52988	chr12:122991470:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	MAP4K5->chr14:50885219-51027844:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_5,RSRC2->arginine/serine-rich_coiled-coil_2,chr12:122989190-123011547:-	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	NCOR1--PAFAH1B1	2	0	NCOR1	16332	chr17:16046920:-	PAFAH1B1	75705	chr17:2579799:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1,PAFAH1B1->chr17:2496504-2588909:+,platelet_activating_factor_acetylhydrolase_1b_regulatory_subunit_1	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PAPD4--RASGRF2	2	0	PAPD4	1956	chr5:78908898:+	RASGRF2	47366	chr5:80475994:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PAPD4->PAP_associated_domain_containing_4,chr5:78907943-78982471:+,RASGRF2->Oncogene{Bushman},Ras_protein_specific_guanine_nucleotide_releasing_factor_2,chr5:80256491-80525975:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PARD3B--PLCL1	2	0	PARD3B	4816	chr2:205830046:+	PLCL1	57716	chr2:199252577:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta,PLCL1->Oncogene{Bushman},chr2:198669426-199437305:+,phospholipase_C_like_1	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PLXNA4--EXOC4	2	0	PLXNA4	7628	chr7:132174051:-	EXOC4	64190	chr7:133160082:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx&tcga_normals:1/3694=0.03%,PLXNA4->chr7:131808091-132333447:-,plexin_A4,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PPCDC--TMEM181	2	0	PPCDC	2354	chr15:75320794:+	TMEM181	20783	chr6:159026299:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PPCDC->chr15:75315896-75409803:+,phosphopantothenoylcysteine_decarboxylase,TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PPP1R12C--WBSCR22	2	0	PPP1R12C	7638	chr19:55614777:-	WBSCR22	20968	chr7:73100966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,WBSCR22->Williams-Beuren_syndrome_chromosome_region_22,chr7:73097355-73119491:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PREX1--ARFGEF2	2	0	PREX1	1242	chr20:47444179:-	ARFGEF2	45847	chr20:47557736:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	{Klijn_CCL:Breast=1},LOCAL_INVERSION:-:+:[94007],PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1,ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	PRKDC--UBE2V2	2	0	PRKDC	1211	chr8:48872533:-	UBE2V2	92399	chr8:48955593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[48217],PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,UBE2V2->chr8:48920960-48977268:+,ubiquitin_conjugating_enzyme_E2_V2	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	RCC1--ADK	2	0	RCC1	2175	chr1:28834672:+	ADK	30627	chr10:76349040:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ADK->adenosine_kinase,chr10:75910960-76469061:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	RP11-679C8.2--DYNLRB1	2	0	RP11-679C8.2	6018	chr4:121071776:+	DYNLRB1	16478	chr20:33114073:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RP11-679C8.2->chr4:120988113-121337921:+,DYNLRB1->chr20:33104214-33128762:+,dynein_light_chain_roadblock-type_1	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	SEPT2--GDI2	2	0	SEPT2	9377	chr2:242274627:+	GDI2	33348	chr10:5815904:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	SKIV2L2--TYRP1	2	0	SKIV2L2	1388	chr5:54603975:+	TYRP1	37185	chr9:12693912:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SKIV2L2->Ski2_like_RNA_helicase_2,chr5:54603588-54721409:+,TYRP1->chr9:12685439-12710290:+,tyrosinase_related_protein_1	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	SYNJ2--TAB2	2	0	SYNJ2	2320	chr6:158438322:+	TAB2	51557	chr6:149718740:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SYNJ2->chr6:158402888-158520208:+,synaptojanin_2,TAB2->TGF-beta_activated_kinase_1/MAP3K7_binding_protein_2,chr6:149539777-149732749:+	KG1C_CENTRAL_NERVOUS_SYSTEM	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	RSRC1--MLF1	1	2	RSRC1	14780	chr3:158072697:+	MLF1	28430	chr3:158306641:+	ONLY_REF_SPLICE	NO	9	31	0.25	0.09	0.0106	0.0211	NEIGHBORS[25433],RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MLF1->Oncogene{Bushman},chr3:158288952-158325041:+,myeloid_leukemia_factor_1	KG1C_CENTRAL_NERVOUS_SYSTEM	0.09	0.25	0.0317	FALSE	0	0	0	1	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	AHRR--NDUFS6	1	1	AHRR	7866	chr5:376831:+	NDUFS6	26591	chr5:1814453:+	ONLY_REF_SPLICE	YES	33	268	0.06	0.01	0.0106	0.0106	AHRR->aryl-hydrocarbon_receptor_repressor,chr5:304291-438406:+,NDUFS6->NADH:ubiquinone_oxidoreductase_subunit_S6,chr5:1801514-1816719:+	KG1C_CENTRAL_NERVOUS_SYSTEM	0.01	0.06	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	NRP1--PARD3	1	1	NRP1	4012	chr10:33619636:-	PARD3	56536	chr10:34626354:-	ONLY_REF_SPLICE	NO	299	27	0.01	0.07	0.0106	0.0106	GTEx_FI:{Nerve=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Kidney=[count:1=pct:7.1],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Kidney_-_Cortex=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Lung=1},NRP1->chr10:33466420-33625190:-,neuropilin_1,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	KG1C_CENTRAL_NERVOUS_SYSTEM	0.01	0.07	0.0212	FALSE	0	0	0	2	0	FALSE	ACH-000126
KG1C_CENTRAL_NERVOUS_SYSTEM	ZBTB20--TIGIT	1	1	ZBTB20	6598	chr3:114693213:-	TIGIT	51976	chr3:114018444:+	ONLY_REF_SPLICE	YES	3	8	0.4	0.2	0.0106	0.0106	LOCAL_INVERSION:-:+:[27806],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,TIGIT->T-cell_immunoreceptor_with_Ig_and_ITIM_domains,chr3:113995760-114029135:+	KG1C_CENTRAL_NERVOUS_SYSTEM	0.2	0.4	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000126
HCC827GR5_LUNG	RASSF3--FRG1B	825	119	RASSF3	1231	chr12:65004523:+	FRG1B	15672	chr20:29623129:+	ONLY_REF_SPLICE	YES	21	162	0.98	0.85	9.7504	1.4064	RASSF3->Ras_association_domain_family_member_3,chr12:65004293-65091347:+,FRG1B->chr20:29611857-29634010:+	HCC827GR5_LUNG	0.85	0.98	11.1568	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	KIAA1429--RP11-586K2.1	262	170	KIAA1429	2261	chr8:95556055:-	RP11-586K2.1	37940	chr8:89712521:+	ONLY_REF_SPLICE	YES	48	0	0.9	1	3.0965	2.0092	KIAA1429->KIAA1429,chr8:95499921-95565757:-,RP11-586K2.1->chr8:89339065-89749363:+	HCC827GR5_LUNG	0.9	1	5.1057	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	TBK1--RP11-338E21.1	126	59	TBK1	6330	chr12:64860862:+	RP11-338E21.1	24507	chr12:64992996:-	ONLY_REF_SPLICE	YES	797	0	0.19	1	1.4892	0.6973	LOCAL_INVERSION:+:-:[96970],TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,RP11-338E21.1->chr12:64992858-65003239:-	HCC827GR5_LUNG	0.19	1	2.1865	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	WASL--NDUFA5	107	69	WASL	1450	chr7:123388672:-	NDUFA5	23020	chr7:123190640:-	ONLY_REF_SPLICE	YES	198	67	0.47	0.72	1.2646	0.8155	WASL->Wiskott-Aldrich_syndrome_like,chr7:123321989-123389121:-,NDUFA5->NADH:ubiquinone_oxidoreductase_subunit_A5,chr7:123177051-123198309:-	HCC827GR5_LUNG	0.47	0.72	2.0801	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	RPL7--CASC8	85	141	RPL7	3775	chr8:74204924:-	CASC8	15033	chr8:128433208:-	ONLY_REF_SPLICE	YES	7741	1	0.03	1	1.0046	1.6664	RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC827GR5_LUNG	0.03	1	2.671	TRUE	0	0	0	2	0	FALSE	ACH-000029
HCC827GR5_LUNG	ARPC1B--MDFIC	112	1	ARPC1B	1533	chr7:98972404:+	MDFIC	21704	chr7:114619561:+	ONLY_REF_SPLICE	YES	32	88	0.78	0.56	1.3237	0.0118	ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MDFIC->MyoD_family_inhibitor_domain_containing,chr7:114562209-114659256:+	HCC827GR5_LUNG	0.56	0.78	1.3355	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	ST3GAL1--RP11-103H7.2	90	60	ST3GAL1	12845	chr8:134487962:-	RP11-103H7.2	27477	chr8:127512122:+	ONLY_REF_SPLICE	YES	10	0	0.94	1	1.0637	0.7091	ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,RP11-103H7.2->chr8:127510394-127512548:+	HCC827GR5_LUNG	0.94	1	1.7728	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	TIMM23B--LINC00843	46	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5437	0.1536	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC827GR5_LUNG	1	1	0.6973	TRUE	508	994	45	981	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-TA--MT-TC	45	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5318	0.1182	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC827GR5_LUNG	1	1	0.65	FALSE	462	80	0	856	0	FALSE	ACH-000029
HCC827GR5_LUNG	ZSWIM4--RFX1	35	37	ZSWIM4	6454	chr19:13923978:+	RFX1	24652	chr19:14094407:-	ONLY_REF_SPLICE	YES	32	14	0.69	0.84	0.4137	0.4373	{Klijn_CCL:Lung=1},ZSWIM4->chr19:13906274-13943044:+,zinc_finger_SWIM-type_containing_4,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	HCC827GR5_LUNG	0.69	0.84	0.851	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	RPL7--CASC8	2	150	RPL7	3775	chr8:74204924:-	CASC8	13251	chr8:128455965:-	ONLY_REF_SPLICE	YES	7741	1	0.02	0.99	0.0236	1.7728	RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC827GR5_LUNG	0.02	0.99	1.7964	TRUE	0	0	0	2	0	FALSE	ACH-000029
HCC827GR5_LUNG	RPL7--CASC8	1	150	RPL7	3775	chr8:74204924:-	CASC8	10262	chr8:128493316:-	ONLY_REF_SPLICE	NO	7741	0	0.02	1	0.0118	1.7728	RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC827GR5_LUNG	0.02	1	1.7846	TRUE	0	0	0	1	0	FALSE	ACH-000029
HCC827GR5_LUNG	RP11-114H23.1--RP11-114H23.2	27	35	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	3	0	0.95	1	0.3191	0.4137	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC827GR5_LUNG	0.95	1	0.7328	FALSE	81	155	12	160	0	FALSE	ACH-000029
HCC827GR5_LUNG	MIB1--DSG1	30	18	MIB1	8339	chr18:19359646:+	DSG1	44935	chr18:28918278:+	ONLY_REF_SPLICE	YES	38	0	0.56	1	0.3546	0.2127	MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1,DSG1->chr18:28898052-28936992:+,desmoglein_1	HCC827GR5_LUNG	0.56	1	0.5673	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	TIMM23--RP11-464F9.1	33	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	281	2	0.11	0.95	0.39	0.0236	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC827GR5_LUNG	0.11	0.95	0.4136	TRUE	519	3926	326	965	0	FALSE	ACH-000029
HCC827GR5_LUNG	ZNF654--HMGB2	28	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3309	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HCC827GR5_LUNG	1	1	0.3309	TRUE	0	0	0	518	0	FALSE	ACH-000029
HCC827GR5_LUNG	LRRC6--PMP2	22	23	LRRC6	16213	chr8:133590655:-	PMP2	21833	chr8:82357224:-	ONLY_REF_SPLICE	YES	604	0	0.07	1	0.26	0.2718	LRRC6->chr8:133584320-133687838:-,leucine_rich_repeat_containing_6,PMP2->chr8:82352561-82359758:-,peripheral_myelin_protein_2	HCC827GR5_LUNG	0.07	1	0.5318	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	TBK1--RP11-338E21.1	13	59	TBK1	6330	chr12:64860862:+	RP11-338E21.1	24489	chr12:64993014:-	INCL_NON_REF_SPLICE	YES	797	0	0.08	1	0.1536	0.6973	LOCAL_INVERSION:+:-:[96970],TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,RP11-338E21.1->chr12:64992858-65003239:-	HCC827GR5_LUNG	0.08	1	0.8509	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	KIAA1429--RP11-586K2.1	8	75	KIAA1429	2261	chr8:95556055:-	RP11-586K2.1	40396	chr8:89747954:+	ONLY_REF_SPLICE	YES	48	0	0.63	1	0.0945	0.8864	KIAA1429->KIAA1429,chr8:95499921-95565757:-,RP11-586K2.1->chr8:89339065-89749363:+	HCC827GR5_LUNG	0.63	1	0.9809	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	25	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15526	11	0	0.72	0.2955	0.0355	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	0.72	0.331	FALSE	230	193	14	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	KIAA1429--RP11-586K2.1	3	85	KIAA1429	2261	chr8:95556055:-	RP11-586K2.1	38998	chr8:89721559:+	ONLY_REF_SPLICE	YES	48	0	0.65	1	0.0355	1.0046	KIAA1429->KIAA1429,chr8:95499921-95565757:-,RP11-586K2.1->chr8:89339065-89749363:+	HCC827GR5_LUNG	0.65	1	1.0401	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	JPH1--NCOA2	22	5	JPH1	3180	chr8:75227096:-	NCOA2	15431	chr8:71209035:-	ONLY_REF_SPLICE	YES	70	11	0.28	0.71	0.26	0.0591	JPH1->chr8:75146935-75233563:-,junctophilin_1,NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2	HCC827GR5_LUNG	0.28	0.71	0.3191	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	WASL--NDUFA5	4	72	WASL	1450	chr7:123388672:-	NDUFA5	18276	chr7:123197502:-	ONLY_REF_SPLICE	YES	198	37	0.28	0.67	0.0473	0.8509	WASL->Wiskott-Aldrich_syndrome_like,chr7:123321989-123389121:-,NDUFA5->NADH:ubiquinone_oxidoreductase_subunit_A5,chr7:123177051-123198309:-	HCC827GR5_LUNG	0.28	0.67	0.8982	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	RP11-96H19.1--RP11-446N19.1	17	19	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	6	0	0.86	1	0.2009	0.2246	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC827GR5_LUNG	0.86	1	0.4255	FALSE	515	4851	409	746	0	FALSE	ACH-000029
HCC827GR5_LUNG	RPL7--CASC8	6	61	RPL7	3775	chr8:74204924:-	CASC8	17308	chr8:128302305:-	ONLY_REF_SPLICE	YES	7741	9	0.01	0.88	0.0709	0.7209	RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC827GR5_LUNG	0.01	0.88	0.7918	TRUE	0	0	0	2	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ATP6--MT-CO1	20	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	12460	34875	0	0	0.2364	0.0355	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827GR5_LUNG	0	0	0.2719	FALSE	183	104	9	328	0	FALSE	ACH-000029
HCC827GR5_LUNG	RPL7--CASC8	3	71	RPL7	3775	chr8:74204924:-	CASC8	16168	chr8:128335399:-	ONLY_REF_SPLICE	YES	7741	9	0.01	0.89	0.0355	0.8391	RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC827GR5_LUNG	0.01	0.89	0.8746	TRUE	0	0	0	1	0	FALSE	ACH-000029
HCC827GR5_LUNG	TMEM9B--TMEM41B	19	7	TMEM9B	7711	chr11:8969849:-	TMEM41B	14298	chr11:9316934:-	INCL_NON_REF_SPLICE	YES	127	120	0.17	0.18	0.2246	0.0827	TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-,TMEM41B->chr11:9302201-9336327:-,transmembrane_protein_41B	HCC827GR5_LUNG	0.17	0.18	0.3073	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	WASL--NDUFA5	3	69	WASL	1450	chr7:123388672:-	NDUFA5	22030	chr7:123191630:-	ONLY_REF_SPLICE	YES	198	58	0.27	0.55	0.0355	0.8155	WASL->Wiskott-Aldrich_syndrome_like,chr7:123321989-123389121:-,NDUFA5->NADH:ubiquinone_oxidoreductase_subunit_A5,chr7:123177051-123198309:-	HCC827GR5_LUNG	0.27	0.55	0.851	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	TPD52--PCAT1	19	2	TPD52	6214	chr8:81083660:-	PCAT1	30419	chr8:127889917:+	ONLY_REF_SPLICE	YES	412	0	0.05	1	0.2246	0.0236	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding)	HCC827GR5_LUNG	0.05	1	0.2482	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	IGSF3--GGT1	16	11	IGSF3	13001	chr1:117131316:-	GGT1	26899	chr22:25003921:+	ONLY_REF_SPLICE	YES	75	168	0.26	0.14	0.1891	0.13	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	HCC827GR5_LUNG	0.14	0.26	0.3191	TRUE	1	1	0	8	1	TRUE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	18	3	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	15728	122	0	0.15	0.2127	0.0355	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	0.15	0.2482	FALSE	231	204	14	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	LRRC6--PMP2	14	15	LRRC6	15104	chr8:133595941:-	PMP2	21833	chr8:82357224:-	ONLY_REF_SPLICE	YES	633	0	0.04	1	0.1655	0.1773	LRRC6->chr8:133584320-133687838:-,leucine_rich_repeat_containing_6,PMP2->chr8:82352561-82359758:-,peripheral_myelin_protein_2	HCC827GR5_LUNG	0.04	1	0.3428	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	RP11-59N23.1--CMAS	13	7	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	19	365	0.51	0.05	0.1536	0.0827	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	HCC827GR5_LUNG	0.05	0.51	0.2363	TRUE	21	102	17	28	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-TA--MT-TC	12	10	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1418	0.1182	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC827GR5_LUNG	1	1	0.26	FALSE	462	80	0	856	0	FALSE	ACH-000029
HCC827GR5_LUNG	C15orf57--CBX3	11	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	106	74	0.17	0.23	0.13	0.13	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC827GR5_LUNG	0.17	0.23	0.26	TRUE	267	562	48	632	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ATP6--MT-CO1	13	3	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	12267	33971	0	0	0.1536	0.0355	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827GR5_LUNG	0	0	0.1891	FALSE	183	104	9	328	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-TA--MT-TC	10	12	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1182	0.1418	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC827GR5_LUNG	1	1	0.26	FALSE	462	80	0	856	0	FALSE	ACH-000029
HCC827GR5_LUNG	WASL--NDUFA5	4	33	WASL	1450	chr7:123388672:-	NDUFA5	25643	chr7:123185730:-	ONLY_REF_SPLICE	YES	198	649	0.16	0.05	0.0473	0.39	WASL->Wiskott-Aldrich_syndrome_like,chr7:123321989-123389121:-,NDUFA5->NADH:ubiquinone_oxidoreductase_subunit_A5,chr7:123177051-123198309:-	HCC827GR5_LUNG	0.05	0.16	0.4373	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	ARFGEF1--SGK3	9	12	ARFGEF1	22076	chr8:68150578:-	SGK3	53454	chr8:67705851:+	ONLY_REF_SPLICE	YES	254	4	0.08	0.84	0.1064	0.1418	ARFGEF1->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_1,chr8:68085747-68255912:-,SGK3->chr8:67624653-67774257:+,serum/glucocorticoid_regulated_kinase_family_member_3	HCC827GR5_LUNG	0.08	0.84	0.2482	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	10	8	MT-ND4	1531	chrM:11290:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	25402	15	0	0.55	0.1182	0.0945	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	0.55	0.2127	FALSE	231	217	16	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	STK25--HDLBP	8	15	STK25	10390	chr2:242435813:-	HDLBP	41718	chr2:242179537:-	ONLY_REF_SPLICE	YES	491	701	0.04	0.03	0.0945	0.1773	STK25->chr2:242432089-242449145:-,serine/threonine_kinase_25,HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein	HCC827GR5_LUNG	0.03	0.04	0.2718	TRUE	0	0	0	1	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND6--MT-TE	11	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.81	1	0.13	0.0236	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC827GR5_LUNG	0.81	1	0.1536	FALSE	499	1288	110	792	0	FALSE	ACH-000029
HCC827GR5_LUNG	TRRAP--LMOD2	6	21	TRRAP	40370	chr7:98554156:+	LMOD2	75567	chr7:123301914:+	ONLY_REF_SPLICE	YES	66	0	0.29	1	0.0709	0.2482	TRRAP->chr7:98475556-98610866:+,transformation/transcription_domain_associated_protein,LMOD2->chr7:123295861-123304344:+,leiomodin_2	HCC827GR5_LUNG	0.29	1	0.3191	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	RASSF3--FRG1B	2	36	RASSF3	1231	chr12:65004523:+	FRG1B	17636	chr20:29625873:+	ONLY_REF_SPLICE	YES	21	223	0.64	0.15	0.0236	0.4255	RASSF3->Ras_association_domain_family_member_3,chr12:65004293-65091347:+,FRG1B->chr20:29611857-29634010:+	HCC827GR5_LUNG	0.15	0.64	0.4491	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	KB-1047C11.2--SULF1	10	0	KB-1047C11.2	2912	chr8:96281118:+	SULF1	38101	chr8:70539445:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1182	0	KB-1047C11.2->chr8:96216684-96822364:+,SULF1->chr8:70378859-70573150:+,sulfatase_1	HCC827GR5_LUNG	1	1	0.1182	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	MT-ND6--MT-TE	10	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1182	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC827GR5_LUNG	1	1	0.1182	FALSE	499	1288	110	792	0	FALSE	ACH-000029
HCC827GR5_LUNG	JUP--LEPREL4	8	4	JUP	8406	chr17:39923631:-	LEPREL4	29869	chr17:39959683:-	ONLY_REF_SPLICE	YES	940	127	0.01	0.09	0.0945	0.0473	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,LOCAL_REARRANGEMENT:-:[15016],JUP->chr17:39775692-39943183:-,junction_plakoglobin,LEPREL4->chr17:39958199-39968856:-	HCC827GR5_LUNG	0.01	0.09	0.1418	TRUE	0	0	0	1	0	FALSE	ACH-000029
HCC827GR5_LUNG	ICAM5--ANO8	5	14	ICAM5	3886	chr19:10403542:+	ANO8	11828	chr19:17444609:-	ONLY_REF_SPLICE	YES	70	41	0.21	0.32	0.0591	0.1655	{Klijn_CCL:Lung=1},ICAM5->Oncogene{Bushman},chr19:10400657-10407454:+,intercellular_adhesion_molecule_5,ANO8->anoctamin_8,chr19:17434032-17445638:-	HCC827GR5_LUNG	0.21	0.32	0.2246	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	MT-ND5--MT-ND6	7	5	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0827	0.0591	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HCC827GR5_LUNG	1	1	0.1418	FALSE	26	124	4	93	0	FALSE	ACH-000029
HCC827GR5_LUNG	SLC1A5--MT-ND4L	8	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	646	0	0.01	1	0.0945	0.0118	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC827GR5_LUNG	0.01	1	0.1063	FALSE	0	0	0	189	0	FALSE	ACH-000029
HCC827GR5_LUNG	STK25--HDLBP	4	17	STK25	11945	chr2:242434258:-	HDLBP	41718	chr2:242179537:-	ONLY_REF_SPLICE	YES	7	701	0.75	0.03	0.0473	0.2009	STK25->chr2:242432089-242449145:-,serine/threonine_kinase_25,HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein	HCC827GR5_LUNG	0.03	0.75	0.2482	TRUE	0	0	0	1	0	FALSE	ACH-000029
HCC827GR5_LUNG	ZSWIM4--RFX1	4	17	ZSWIM4	5286	chr19:13920034:+	RFX1	24652	chr19:14094407:-	ONLY_REF_SPLICE	YES	123	14	0.15	0.6	0.0473	0.2009	{Klijn_CCL:Lung=1},ZSWIM4->chr19:13906274-13943044:+,zinc_finger_SWIM-type_containing_4,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	HCC827GR5_LUNG	0.15	0.6	0.2482	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	FCHO1--ABCA4	4	16	FCHO1	10532	chr19:17877619:+	ABCA4	56572	chr1:94505683:-	ONLY_REF_SPLICE	YES	10	1	0.67	0.95	0.0473	0.1891	FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+,ABCA4->ATP_binding_cassette_subfamily_A_member_4,chr1:94458393-94586688:-	HCC827GR5_LUNG	0.67	0.95	0.2364	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	7	4	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	16798	2008	0	0.01	0.0827	0.0473	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	0.01	0.13	FALSE	231	204	14	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND5--MT-ND6	7	4	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	2	3562	0.85	0	0.0827	0.0473	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HCC827GR5_LUNG	0	0.85	0.13	FALSE	26	124	4	93	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-TA--MT-TC	7	3	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0827	0.0355	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC827GR5_LUNG	1	1	0.1182	FALSE	462	80	0	856	0	FALSE	ACH-000029
HCC827GR5_LUNG	RP11-96H19.1--RP11-446N19.1	2	22	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	6	0	0.8	1	0.0236	0.26	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC827GR5_LUNG	0.8	1	0.2836	FALSE	407	2205	196	549	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ATP6--MT-CO1	6	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	15014	34502	0	0	0.0709	0.0473	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827GR5_LUNG	0	0	0.1182	FALSE	183	104	9	328	0	FALSE	ACH-000029
HCC827GR5_LUNG	NPM1P24--SET	7	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0827	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC827GR5_LUNG	1	1	0.0827	TRUE	0	0	0	434	0	FALSE	ACH-000029
HCC827GR5_LUNG	RP11-96H19.1--RP11-446N19.1	1	23	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.92	1	0.0118	0.2718	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC827GR5_LUNG	0.92	1	0.2836	FALSE	192	492	57	212	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ATP6--MT-CO1	6	2	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	NO	6222	28753	0	0	0.0709	0.0236	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827GR5_LUNG	0	0	0.0945	FALSE	183	104	9	328	0	FALSE	ACH-000029
HCC827GR5_LUNG	RP11-680G10.1--GSE1	6	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	57	1	0.12	0.0709	0.0236	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC827GR5_LUNG	0.12	1	0.0945	TRUE	465	1949	224	605	0	FALSE	ACH-000029
HCC827GR5_LUNG	SGK3--COPS5	6	1	SGK3	1416	chr8:67625068:+	COPS5	35899	chr8:67971680:-	ONLY_REF_SPLICE	YES	0	1598	1	0	0.0709	0.0118	SGK3->chr8:67624653-67774257:+,serum/glucocorticoid_regulated_kinase_family_member_3,COPS5->COP9_signalosome_subunit_5,chr8:67955314-67996018:-	HCC827GR5_LUNG	0	1	0.0827	FALSE	0	0	0	2	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	5	4	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	16124	486	0	0.02	0.0591	0.0473	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	0.02	0.1064	FALSE	231	204	14	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	3	12	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	21202	1	0	0.94	0.0355	0.1418	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	0.94	0.1773	FALSE	231	217	16	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	4	8	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	25208	234	0	0.05	0.0473	0.0945	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	0.05	0.1418	FALSE	231	217	16	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	3	12	MT-ND4	1865	chrM:11624:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	21147	1	0	0.94	0.0355	0.1418	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	0.94	0.1773	FALSE	231	217	16	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	3	12	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	20942	0	0	1	0.0355	0.1418	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	1	0.1773	FALSE	231	217	16	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	RP11-96H19.1--RP11-446N19.1	1	20	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.0118	0.2364	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC827GR5_LUNG	0.91	1	0.2482	FALSE	467	2173	244	435	0	FALSE	ACH-000029
HCC827GR5_LUNG	C15orf57--CBX3	3	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	103	77	0.11	0.14	0.0355	0.1182	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC827GR5_LUNG	0.11	0.14	0.1537	TRUE	267	562	48	632	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	21023	1	0	0.93	0.0355	0.1182	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	0.93	0.1537	FALSE	231	217	16	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	SGK3--COPS5	5	2	SGK3	3963	chr8:67687554:+	COPS5	35899	chr8:67971680:-	ONLY_REF_SPLICE	YES	1	1598	0.88	0	0.0591	0.0236	SGK3->chr8:67624653-67774257:+,serum/glucocorticoid_regulated_kinase_family_member_3,COPS5->COP9_signalosome_subunit_5,chr8:67955314-67996018:-	HCC827GR5_LUNG	0	0.88	0.0827	FALSE	0	0	0	2	0	FALSE	ACH-000029
HCC827GR5_LUNG	KIAA1429--RP11-586K2.1	5	1	KIAA1429	1145	chr8:95565613:-	RP11-586K2.1	37940	chr8:89712521:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0591	0.0118	KIAA1429->KIAA1429,chr8:95499921-95565757:-,RP11-586K2.1->chr8:89339065-89749363:+	HCC827GR5_LUNG	1	1	0.0709	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	MT-ATP6--MT-CO1	3	8	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3884	35321	0	0	0.0355	0.0945	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827GR5_LUNG	0	0	0.13	FALSE	183	104	9	328	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	22792	1	0	0.92	0.0355	0.0945	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	0.92	0.13	FALSE	231	217	16	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	22731	0	0	1	0.0355	0.0945	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	1	0.13	FALSE	231	217	16	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	24902	784	0	0.01	0.0355	0.0945	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	0.01	0.13	FALSE	231	217	16	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1741	chrM:11500:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	20933	3	0	0.79	0.0355	0.0945	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	0.79	0.13	FALSE	231	217	16	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	NRIP1--AF127936.7	4	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	22	0.89	0.27	0.0473	0.0473	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC827GR5_LUNG	0.27	0.89	0.0946	FALSE	292	1546	117	613	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	23618	0	0	1	0.0355	0.0827	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	1	0.1182	FALSE	231	217	16	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	NRIP1--AF127936.7	3	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	22	0.38	0.31	0.0355	0.0827	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC827GR5_LUNG	0.31	0.38	0.1182	FALSE	164	806	69	479	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1265	chrM:11024:+	MT-ATP8	5539	chrM:8526:+	INCL_NON_REF_SPLICE	YES	17806	2001	0	0	0.0355	0.0355	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	0	0.071	FALSE	231	205	14	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1213	chrM:10972:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	15627	15	0	0.29	0.0355	0.0355	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	0.29	0.071	FALSE	230	198	14	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	18308	1915	0	0	0.0355	0.0355	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	0	0.071	FALSE	231	205	14	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	RP11-89K10.1--KCNB2	3	3	RP11-89K10.1	2156	chr8:127601535:+	KCNB2	16571	chr8:73848170:+	ONLY_REF_SPLICE	YES	22	0	0.21	1	0.0355	0.0355	RP11-89K10.1->chr8:127570120-127725660:+,KCNB2->chr8:73449626-73850584:+,potassium_voltage-gated_channel_subfamily_B_member_2	HCC827GR5_LUNG	0.21	1	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	MAP2K3--TMEM99	3	2	MAP2K3	8253	chr17:21204305:+	TMEM99	21706	chr17:38989367:+	ONLY_REF_SPLICE	YES	428	2	0.01	0.71	0.0355	0.0236	MAP2K3->chr17:21187984-21218552:+,mitogen-activated_protein_kinase_kinase_3,TMEM99->chr17:38975358-38992522:+,transmembrane_protein_99	HCC827GR5_LUNG	0.01	0.71	0.0591	FALSE	0	0	0	1	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	7919	1	0	0.83	0.0355	0.0236	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	0.83	0.0591	FALSE	230	193	14	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1017	chrM:10776:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	1328	1	0	0.83	0.0355	0.0236	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827GR5_LUNG	0	0.83	0.0591	FALSE	230	190	14	283	0	FALSE	ACH-000029
HCC827GR5_LUNG	MT-ND6--MT-TE	3	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.0118	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC827GR5_LUNG	1	1	0.0473	FALSE	499	1288	110	792	0	FALSE	ACH-000029
HCC827GR5_LUNG	ARPC1B--MDFIC	3	0	ARPC1B	1533	chr7:98972404:+	MDFIC	24354	chr7:114655742:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0	ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MDFIC->MyoD_family_inhibitor_domain_containing,chr7:114562209-114659256:+	HCC827GR5_LUNG	1	1	0.0355	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	PRMT1--KRT18	3	0	PRMT1	12119	chr19:50191485:+	KRT18	16258	chr12:53342992:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	PRMT1->chr19:50179043-50192286:+,protein_arginine_methyltransferase_1,KRT18->chr12:53342655-53346685:+,keratin_18	HCC827GR5_LUNG	1	1	0.0355	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	ARPC1B--MDFIC	2	3	ARPC1B	3540	chr7:98975062:+	MDFIC	21704	chr7:114619561:+	ONLY_REF_SPLICE	YES	179	88	0.03	0.05	0.0236	0.0355	ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MDFIC->MyoD_family_inhibitor_domain_containing,chr7:114562209-114659256:+	HCC827GR5_LUNG	0.03	0.05	0.0591	TRUE	0	0	0	1	0	FALSE	ACH-000029
HCC827GR5_LUNG	MIR4435-1HG--ANAPC1	2	2	MIR4435-1HG	14499	chr2:112101638:-	ANAPC1	48681	chr2:112596089:-	ONLY_REF_SPLICE	NO	44	77	0.08	0.05	0.0236	0.0236	MIR4435-1HG->chr2:111953927-112252677:-,ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-	HCC827GR5_LUNG	0.05	0.08	0.0472	TRUE	0	1	0	4	1	FALSE	ACH-000029
HCC827GR5_LUNG	RP11-114H23.1--RP11-114H23.2	1	6	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	3	9	0.7	0.44	0.0118	0.0709	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC827GR5_LUNG	0.44	0.7	0.0827	FALSE	81	155	12	160	0	FALSE	ACH-000029
HCC827GR5_LUNG	RYR1--SPINT2	2	2	RYR1	1176	chr19:38924514:+	SPINT2	91815	chr19:38774267:+	ONLY_REF_SPLICE	YES	0	3276	1	0	0.0236	0.0236	RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1,SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2	HCC827GR5_LUNG	0	1	0.0472	FALSE	0	0	0	1	0	FALSE	ACH-000029
HCC827GR5_LUNG	TBK1--GNS	2	2	TBK1	6330	chr12:64860862:+	GNS	26065	chr12:65146537:-	ONLY_REF_SPLICE	YES	797	1553	0	0	0.0236	0.0236	TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,GNS->chr12:65107225-65153227:-,glucosamine_(N-acetyl)-6-sulfatase	HCC827GR5_LUNG	0	0	0.0472	FALSE	0	0	0	1	0	FALSE	ACH-000029
HCC827GR5_LUNG	RP11-319G9.5--WWOX	2	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	46	1	0.06	0.0236	0.0118	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	HCC827GR5_LUNG	0.06	1	0.0354	FALSE	154	425	28	76	0	FALSE	ACH-000029
HCC827GR5_LUNG	AC002066.1--SEPT9	2	0	AC002066.1	1112	chr7:116139408:-	SEPT9	44221	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	AC002066.1->chr7:115878314-116139519:-,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	0	0	2	0	TRUE	ACH-000029
HCC827GR5_LUNG	ADAP1--SUN1	2	0	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	HCC827GR5_LUNG	1	1	0.0236	TRUE	16	22	0	27	0	FALSE	ACH-000029
HCC827GR5_LUNG	AFAP1-AS1--DGKG	2	0	AFAP1-AS1	1070	chr4:7755886:+	DGKG	48233	chr3:185823731:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	AFAP1-AS1->AFAP1_antisense_RNA_1,chr4:7755817-7780655:+,DGKG->chr3:185823457-186080026:-,diacylglycerol_kinase_gamma	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	ARPC1B--MDFIC	1	4	ARPC1B	3556	chr7:98975078:+	MDFIC	21704	chr7:114619561:+	ONLY_REF_SPLICE	YES	190	88	0.03	0.05	0.0118	0.0473	ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,MDFIC->MyoD_family_inhibitor_domain_containing,chr7:114562209-114659256:+	HCC827GR5_LUNG	0.03	0.05	0.0591	TRUE	0	0	0	1	0	FALSE	ACH-000029
HCC827GR5_LUNG	C1orf63--RP4-799D16.1	2	0	C1orf63	1145	chr1:25664560:-	RP4-799D16.1	23561	chr1:25370327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,RP4-799D16.1->chr1:25370198-25439611:-	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	C1orf63--RP4-799D16.1	2	0	C1orf63	2174	chr1:25663531:-	RP4-799D16.1	23561	chr1:25370327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,RP4-799D16.1->chr1:25370198-25439611:-	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	C1orf63--RP4-799D16.1	2	0	C1orf63	8720	chr1:25594231:-	RP4-799D16.1	23561	chr1:25370327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,RP4-799D16.1->chr1:25370198-25439611:-	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	CTC-301O7.4--UBAP2	2	0	CTC-301O7.4	3141	chr19:49834874:-	UBAP2	27410	chr9:33941860:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	CTC-301O7.4->chr19:49834874-49843865:-,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HCC827GR5_LUNG	1	1	0.0236	TRUE	347	1186	183	220	0	FALSE	ACH-000029
HCC827GR5_LUNG	IMPAD1--SDCBP	2	0	IMPAD1	1646	chr8:57905758:-	SDCBP	20315	chr8:59477578:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	IMPAD1->chr8:57870492-57906403:-,inositol_monophosphatase_domain_containing_1,SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	ITCH--ASIP	2	0	ITCH	2192	chr20:32957276:+	ASIP	35434	chr20:32848171:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1|LUAD:1|LUSC:1|OV:1],LOCAL_REARRANGEMENT:+:[93891],ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,ASIP->agouti_signaling_protein,chr20:32782375-32857150:+	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	5	1	1	5	TRUE	ACH-000029
HCC827GR5_LUNG	NRD1--PIP4K2C	2	0	NRD1	32362	chr1:52256205:-	PIP4K2C	37995	chr12:57987808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NRD1->chr1:52254863-52344477:-,PIP4K2C->chr12:57984957-57997198:+,phosphatidylinositol-5-phosphate_4-kinase_type_2_gamma	HCC827GR5_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	RASSF3--TBC1D30	2	0	RASSF3	1231	chr12:65004523:+	TBC1D30	19406	chr12:65221615:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEIGHBORS[83242],RASSF3->Ras_association_domain_family_member_3,chr12:65004293-65091347:+,TBC1D30->TBC1_domain_family_member_30,chr12:65174589-65274812:+	HCC827GR5_LUNG	1	1	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000029
HCC827GR5_LUNG	RHBDL2--FCHO1	1	4	RHBDL2	9975	chr1:39358836:-	FCHO1	26449	chr19:17881234:+	ONLY_REF_SPLICE	YES	46	10	0.1	0.33	0.0118	0.0473	RHBDL2->chr1:39351479-39407471:-,rhomboid,_veinlet-like_2_(Drosophila),FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+	HCC827GR5_LUNG	0.1	0.33	0.0591	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	RP11-680G10.1--GSE1	1	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	27	1	0.16	0.0118	0.0473	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC827GR5_LUNG	0.16	1	0.0591	TRUE	458	1351	185	561	0	FALSE	ACH-000029
HCC827GR5_LUNG	ZSWIM4--RFX1	1	4	ZSWIM4	3901	chr19:13915962:+	RFX1	24652	chr19:14094407:-	ONLY_REF_SPLICE	YES	196	14	0.02	0.26	0.0118	0.0473	{Klijn_CCL:Lung=1},ZSWIM4->chr19:13906274-13943044:+,zinc_finger_SWIM-type_containing_4,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	HCC827GR5_LUNG	0.02	0.26	0.0591	TRUE	0	0	0	1	0	FALSE	ACH-000029
HCC827GR5_LUNG	CHCHD3--EXOC4	1	2	CHCHD3	5725	chr7:132709306:-	EXOC4	45019	chr7:133502078:+	ONLY_REF_SPLICE	YES	473	186	0.01	0.02	0.0118	0.0236	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	HCC827GR5_LUNG	0.01	0.02	0.0354	FALSE	0	1	0	1	0	FALSE	ACH-000029
HCC827GR5_LUNG	RP11-115K3.1--MRPL45	1	2	RP11-115K3.1	1199	chr17:36105404:+	MRPL45	7845	chr17:36454415:+	ONLY_REF_SPLICE	YES	20	19	0.13	0.14	0.0118	0.0236	RP11-115K3.1->chr17:36105206-36108563:+,MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45	HCC827GR5_LUNG	0.13	0.14	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	STK25--HDLBP	1	2	STK25	10390	chr2:242435813:-	HDLBP	42020	chr2:242179235:-	ONLY_REF_SPLICE	NO	491	670	0.01	0	0.0118	0.0236	STK25->chr2:242432089-242449145:-,serine/threonine_kinase_25,HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein	HCC827GR5_LUNG	0	0.01	0.0354	FALSE	0	0	0	1	0	FALSE	ACH-000029
HCC827GR5_LUNG	ABCC3--TSPAN1	1	1	ABCC3	11941	chr17:48741472:+	TSPAN1	37591	chr1:46649863:+	ONLY_REF_SPLICE	YES	475	1329	0	0	0.0118	0.0118	ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+,TSPAN1->Oncogene{Bushman},chr1:46640745-46651630:+,tetraspanin_1	HCC827GR5_LUNG	0	0	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000029
HCC827GR5_LUNG	AC002066.1--AC073130.1	1	1	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	28	0	0.07	1	0.0118	0.0118	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	HCC827GR5_LUNG	0.07	1	0.0236	FALSE	0	1	1	30	0	FALSE	ACH-000029
HCC827GR5_LUNG	AC002066.1--TES	1	1	AC002066.1	2203	chr7:116122867:-	TES	15085	chr7:115889074:+	ONLY_REF_SPLICE	YES	28	1084	0.07	0	0.0118	0.0118	NEIGHBORS_OVERLAP:-:+:[20523],AC002066.1->chr7:115878314-116139519:-,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	HCC827GR5_LUNG	0	0.07	0.0236	FALSE	0	0	0	2	0	FALSE	ACH-000029
HCC827GR5_LUNG	AC131097.3--MAP3K13	1	1	AC131097.3	2273	chr2:242824786:+	MAP3K13	18287	chr3:185146285:+	ONLY_REF_SPLICE	YES	1	9	0.67	0.18	0.0118	0.0118	AC131097.3->chr2:242823514-243020873:+,MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13	HCC827GR5_LUNG	0.18	0.67	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000029
HCC827GR5_LUNG	ANXA4--XAB2	1	1	ANXA4	10833	chr2:70033564:+	XAB2	36667	chr19:7685332:-	ONLY_REF_SPLICE	YES	736	229	0	0.01	0.0118	0.0118	ANXA4->annexin_A4,chr2:69871557-70053596:+,XAB2->XPA_binding_protein_2,chr19:7684411-7694451:-	HCC827GR5_LUNG	0	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000029
HCC827GR5_LUNG	GNPAT--RASA1	1	1	GNPAT	1250	chr1:231377202:+	RASA1	25970	chr5:86637107:+	ONLY_REF_SPLICE	YES	136	174	0.01	0.01	0.0118	0.0118	GNPAT->chr1:231376953-231413719:+,glyceronephosphate_O-acyltransferase,RASA1->Oncogene{Bushman},RAS_p21_protein_activator_1,chr5:86563705-86687748:+	HCC827GR5_LUNG	0.01	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000029
HCC827GR5_LUNG	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	13	31	0.13	0.06	0.0118	0.0118	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC827GR5_LUNG	0.06	0.13	0.0236	FALSE	16	356	14	466	0	FALSE	ACH-000029
HCC1438_LUNG	TIMM23B--RP11-175I17.2	71	22	TIMM23B	6950	chr10:51387763:+	RP11-175I17.2	16572	chr10:46358562:-	ONLY_REF_SPLICE	YES	0	12	1	0.89	0.6803	0.2108	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Ovary=[count:1=pct:1.9]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,RP11-175I17.2->chr10:46349541-46411619:-	HCC1438_LUNG	0.89	1	0.8911	TRUE	0	16	0	2	16	TRUE	ACH-000891
HCC1438_LUNG	TIMM23--RP11-592B15.3	69	22	TIMM23	6952	chr10:51606988:-	RP11-592B15.3	21430	chr10:51262177:-	ONLY_REF_SPLICE	YES	180	12	0.34	0.88	0.6611	0.2108	GTEx_FI:{Stomach=[count:2=pct:2.2],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Nerve=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Breast=[count:1=pct:0.9],Muscle=[count:1=pct:0.4]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-592B15.3->chr10:51253146-51371338:-	HCC1438_LUNG	0.34	0.88	0.8719	TRUE	8	39	3	4	0	FALSE	ACH-000891
HCC1438_LUNG	PRAME--RFPL1	48	11	PRAME	9047	chr22:22892148:-	RFPL1	15573	chr22:29837531:+	ONLY_REF_SPLICE	YES	405	4	0.13	0.94	0.4599	0.1054	PRAME->chr22:22890123-22901768:-,preferentially_expressed_antigen_in_melanoma,RFPL1->chr22:29834572-29838444:+,ret_finger_protein_like_1	HCC1438_LUNG	0.13	0.94	0.5653	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	ZNF654--HMGB2	47	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4503	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HCC1438_LUNG	1	1	0.4503	TRUE	0	0	0	518	0	FALSE	ACH-000891
HCC1438_LUNG	KDM5B--RP11-335O13.8	38	11	KDM5B	2369	chr1:202777230:-	RP11-335O13.8	38994	chr1:203119180:-	ONLY_REF_SPLICE	YES	36	3	0.58	0.94	0.3641	0.1054	KDM5B->chr1:202696526-202778598:-,lysine_demethylase_5B,RP11-335O13.8->chr1:203113092-203122028:-	HCC1438_LUNG	0.58	0.94	0.4695	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	PSPH--CCT6A	31	15	PSPH	1467	chr7:56118831:-	CCT6A	17085	chr7:56122062:+	ONLY_REF_SPLICE	YES	68	1320	0.4	0.03	0.297	0.1437	LOCAL_INVERSION:-:+:[26],PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	HCC1438_LUNG	0.03	0.4	0.4407	TRUE	0	0	0	2	0	FALSE	ACH-000891
HCC1438_LUNG	MT-TA--MT-TC	32	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3066	0.0192	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1438_LUNG	1	1	0.3258	FALSE	462	80	0	856	0	FALSE	ACH-000891
HCC1438_LUNG	RP11-634B7.4--TRIM58	19	13	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	20	0.97	0.62	0.182	0.1246	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	HCC1438_LUNG	0.62	0.97	0.3066	TRUE	158	633	76	73	0	FALSE	ACH-000891
HCC1438_LUNG	C15orf57--CBX3	18	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	41	41	0.45	0.45	0.1725	0.1533	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1438_LUNG	0.45	0.45	0.3258	TRUE	267	562	48	632	0	FALSE	ACH-000891
HCC1438_LUNG	RP11-680G10.1--GSE1	21	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2012	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1438_LUNG	1	1	0.2012	TRUE	465	1949	224	605	0	FALSE	ACH-000891
HCC1438_LUNG	NPM1P24--SET	19	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.182	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1438_LUNG	1	1	0.182	TRUE	0	0	0	434	0	FALSE	ACH-000891
HCC1438_LUNG	CTD-2008L17.1--RP11-456O19.2	18	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1725	0.0192	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HCC1438_LUNG	1	1	0.1917	FALSE	20	187	4	79	0	FALSE	ACH-000891
HCC1438_LUNG	PKM--ALDOA	14	0	PKM	10614	chr15:72502054:-	ALDOA	31408	chr16:30078920:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1341	0	GTEx&tcga_normals:1/3694=0.03%,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	HCC1438_LUNG	1	1	0.1341	TRUE	0	0	0	2	0	TRUE	ACH-000891
HCC1438_LUNG	HSP90AB1--MT-RNR2	12	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3121	0	0	1	0.115	0.0192	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1438_LUNG	0	1	0.1342	FALSE	13	9	0	364	0	FALSE	ACH-000891
HCC1438_LUNG	KDM5B--RP11-335O13.8	9	13	KDM5B	2369	chr1:202777230:-	RP11-335O13.8	37878	chr1:203121793:-	INCL_NON_REF_SPLICE	YES	36	1	0.38	0.96	0.0862	0.1246	KDM5B->chr1:202696526-202778598:-,lysine_demethylase_5B,RP11-335O13.8->chr1:203113092-203122028:-	HCC1438_LUNG	0.38	0.96	0.2108	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	C15orf57--CBX3	8	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	40	42	0.32	0.31	0.0767	0.1054	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1438_LUNG	0.31	0.32	0.1821	TRUE	267	562	48	632	0	FALSE	ACH-000891
HCC1438_LUNG	HSP90AB1--MT-RNR2	9	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3082	0	0	1	0.0862	0.0192	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1438_LUNG	0	1	0.1054	FALSE	13	9	0	364	0	FALSE	ACH-000891
HCC1438_LUNG	RP4-565E6.1--HYDIN	8	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0767	0.0383	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HCC1438_LUNG	0.92	1	0.115	TRUE	456	1387	91	133	0	FALSE	ACH-000891
HCC1438_LUNG	CALM3--MT-ND4L	8	2	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	968	0	0.01	1	0.0767	0.0192	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1438_LUNG	0.01	1	0.0959	FALSE	1	1	0	107	0	FALSE	ACH-000891
HCC1438_LUNG	RP11-476K15.1--CTD-2015H3.2	8	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.0767	0.0096	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HCC1438_LUNG	0.64	1	0.0863	FALSE	0	46	0	73	0	FALSE	ACH-000891
HCC1438_LUNG	RP11-680G10.1--GSE1	8	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	41	1	0.18	0.0767	0.0096	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1438_LUNG	0.18	1	0.0863	TRUE	458	1351	185	561	0	FALSE	ACH-000891
HCC1438_LUNG	KDM5B--RP11-335O13.8	4	13	KDM5B	2369	chr1:202777230:-	RP11-335O13.8	37874	chr1:203121797:-	INCL_NON_REF_SPLICE	YES	36	1	0.32	0.94	0.0383	0.1246	KDM5B->chr1:202696526-202778598:-,lysine_demethylase_5B,RP11-335O13.8->chr1:203113092-203122028:-	HCC1438_LUNG	0.32	0.94	0.1629	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	RP11-123O10.4--GRIP1	7	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0.0096	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1438_LUNG	1	1	0.0767	FALSE	416	2512	207	587	0	FALSE	ACH-000891
HCC1438_LUNG	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1438_LUNG	1	1	0.0671	FALSE	292	1546	117	613	0	FALSE	ACH-000891
HCC1438_LUNG	CTD-2008L17.1--RP11-456O19.2	6	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0575	0.0096	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HCC1438_LUNG	1	1	0.0671	FALSE	33	240	4	98	0	FALSE	ACH-000891
HCC1438_LUNG	LINC01036--LINC01037	6	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0575	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HCC1438_LUNG	1	1	0.0575	FALSE	0	24	0	62	0	FALSE	ACH-000891
HCC1438_LUNG	PPP1R12A--IL7	6	0	PPP1R12A	27543	chr12:80180154:-	IL7	43163	chr8:79652317:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0575	0	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,IL7->Oncogene{Bushman},chr8:79587978-79717758:-,interleukin_7	HCC1438_LUNG	1	1	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	MT-TA--MT-TC	5	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0.0287	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1438_LUNG	1	1	0.0766	FALSE	462	80	0	856	0	FALSE	ACH-000891
HCC1438_LUNG	RP11-120D5.1--MID1	5	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	96	0.78	0.07	0.0479	0.0192	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC1438_LUNG	0.07	0.78	0.0671	FALSE	16	356	14	466	0	FALSE	ACH-000891
HCC1438_LUNG	RP11-268G12.1--NR0B1	5	1	RP11-268G12.1	1247	chrX:27416868:-	NR0B1	17355	chrX:30322940:-	ONLY_REF_SPLICE	YES	24	409	0.2	0.01	0.0479	0.0096	RP11-268G12.1->chrX:27193037-27417114:-,NR0B1->chrX:30322323-30327715:-,nuclear_receptor_subfamily_0_group_B_member_1	HCC1438_LUNG	0.01	0.2	0.0575	FALSE	0	1	0	3	1	FALSE	ACH-000891
HCC1438_LUNG	TMCC1--TMCC1-AS1	5	1	TMCC1	3255	chr3:129599152:-	TMCC1-AS1	27480	chr3:129620550:+	ONLY_REF_SPLICE	YES	25	5	0.19	0.55	0.0479	0.0096	LOCAL_INVERSION:-:+:[295],TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1,TMCC1-AS1->TMCC1_antisense_RNA_1_(head_to_head),chr3:129612714-129637418:+	HCC1438_LUNG	0.19	0.55	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	LINC01036--LINC01037	5	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0479	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HCC1438_LUNG	1	1	0.0479	FALSE	0	26	0	50	0	FALSE	ACH-000891
HCC1438_LUNG	RP11-722M1.1--RP11-431M7.2	4	4	RP11-722M1.1	7110	chr4:36500049:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	YES	8	0	0.5	1	0.0383	0.0383	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	HCC1438_LUNG	0.5	1	0.0766	TRUE	0	1	0	4	1	TRUE	ACH-000891
HCC1438_LUNG	EEF2--MT2A	4	3	EEF2	7125	chr19:3979343:-	MT2A	13651	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	1895	0	0	1	0.0383	0.0287	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HCC1438_LUNG	0	1	0.067	FALSE	0	0	0	6	0	FALSE	ACH-000891
HCC1438_LUNG	PRR16--CTD-2334D19.1	4	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	15	0	0.32	1	0.0383	0.0287	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HCC1438_LUNG	0.32	1	0.067	FALSE	56	216	12	147	0	FALSE	ACH-000891
HCC1438_LUNG	IFI27--MT-ND4L	3	6	IFI27	8929	chr14:94582869:+	MT-ND4L	12095	chrM:10471:+	INCL_NON_REF_SPLICE	YES	933	0	0.01	1	0.0287	0.0575	IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1438_LUNG	0.01	1	0.0862	FALSE	0	0	0	13	0	FALSE	ACH-000891
HCC1438_LUNG	TTC28--GNB1L	4	2	TTC28	2523	chr22:29025540:-	GNB1L	45514	chr22:19789739:-	ONLY_REF_SPLICE	YES	27	35	0.18	0.15	0.0383	0.0192	TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	HCC1438_LUNG	0.15	0.18	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	EEF2--MT2A	3	4	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	1323	0	0.01	1	0.0287	0.0383	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HCC1438_LUNG	0.01	1	0.067	FALSE	1	0	0	19	0	FALSE	ACH-000891
HCC1438_LUNG	PTPRG--FRMD8	4	0	PTPRG	1804	chr3:61548046:+	FRMD8	56760	chr11:65178713:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0383	0	PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,FRMD8->FERM_domain_containing_8,Oncogene{Bushman},chr11:65154070-65180996:+	HCC1438_LUNG	1	1	0.0383	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	TTC28--CTA-929C8.7	4	0	TTC28	2523	chr22:29025540:-	CTA-929C8.7	41997	chr22:27703526:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0383	0	TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28,CTA-929C8.7->chr22:27703444-27714499:-	HCC1438_LUNG	1	1	0.0383	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	PRR16--CTD-2334D19.1	3	3	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0287	0.0287	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HCC1438_LUNG	0.6	1	0.0574	FALSE	21	45	1	60	0	FALSE	ACH-000891
HCC1438_LUNG	EEF2--MT2A	3	2	EEF2	9846	chr19:3976466:-	MT2A	13683	chr16:56642535:+	INCL_NON_REF_SPLICE	YES	1197	0	0	1	0.0287	0.0192	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HCC1438_LUNG	0	1	0.0479	FALSE	1	0	0	19	0	FALSE	ACH-000891
HCC1438_LUNG	CAPN15--TMEM8A	3	0	CAPN15	2366	chr16:583998:+	TMEM8A	22194	chr16:427848:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx_FI:{Skin=[count:1=pct:0.3],Testis=[count:1=pct:1.0]},GTEx_v2:{count=9;pct=0.10%;dist=Testis=3,Skin_-_Sun_Exposed_(Lower_leg)=2,Stomach=1,Liver=1,Whole_Blood=1,Cells_-_Transformed_fibroblasts=1},CAPN15->calpain_15,chr16:577717-604636:+,TMEM8A->chr16:420773-437113:-,transmembrane_protein_8A	HCC1438_LUNG	1	1	0.0287	TRUE	2	12	0	2	0	FALSE	ACH-000891
HCC1438_LUNG	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1438_LUNG	1	1	0.0287	TRUE	0	0	0	434	0	FALSE	ACH-000891
HCC1438_LUNG	RP11-353N4.6--SEC22B	3	0	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HCC1438_LUNG	1	1	0.0287	TRUE	49	42	7	43	0	FALSE	ACH-000891
HCC1438_LUNG	RP11-722M1.1--RP11-431M7.2	2	3	RP11-722M1.1	4366	chr4:36584279:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	YES	11	0	0.31	1	0.0192	0.0287	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	HCC1438_LUNG	0.31	1	0.0479	TRUE	0	1	0	4	1	TRUE	ACH-000891
HCC1438_LUNG	RP11-120D5.1--MID1	2	2	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	96	1	0.04	0.0192	0.0192	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC1438_LUNG	0.04	1	0.0384	FALSE	2	31	0	60	0	FALSE	ACH-000891
HCC1438_LUNG	RP11-114H21.2--CTB-1I21.1	1	5	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	17	0	0.26	1	0.0096	0.0479	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	HCC1438_LUNG	0.26	1	0.0575	TRUE	0	2	0	12	2	TRUE	ACH-000891
HCC1438_LUNG	CECR5--CRYBB1	2	0	CECR5	5198	chr22:17629338:-	CRYBB1	18540	chr22:27003985:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	CECR5->Oncogene{Bushman},cat_eye_syndrome_chromosome_region,_candidate_5,chr22:17618401-17646177:-,CRYBB1->chr22:26995242-27014052:-,crystallin_beta_B1	HCC1438_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	FPGS--TTC16	2	0	FPGS	10843	chr9:130575602:+	TTC16	17555	chr9:130482357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	LOCAL_REARRANGEMENT:+:[62997],FPGS->chr9:130556876-130576606:+,folylpolyglutamate_synthase,TTC16->chr9:130478345-130493879:+,tetratricopeptide_repeat_domain_16	HCC1438_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	PLOD2--PLSCR1	2	0	PLOD2	2347	chr3:145878668:-	PLSCR1	33461	chr3:146251337:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},PLOD2->chr3:145787227-145881440:-,procollagen-lysine,2-oxoglutarate_5-dioxygenase_2,PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1	HCC1438_LUNG	1	1	0.0192	TRUE	1	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	RP11-353N4.6--SEC22B	2	0	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HCC1438_LUNG	1	1	0.0192	TRUE	49	42	7	43	0	FALSE	ACH-000891
HCC1438_LUNG	RP11-66B24.2--SEPT10	2	0	RP11-66B24.2	1772	chr15:101390537:+	SEPT10	13578	chr2:110350696:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	GTEx_FI:{Esophagus=[count:2=pct:0.5]},RP11-66B24.2->chr15:101389766-101402376:+,SEPT10->chr2:110300559-110371783:-,septin_10	HCC1438_LUNG	1	1	0.0192	TRUE	2	0	2	2	0	FALSE	ACH-000891
HCC1438_LUNG	SUPT16H--PNP	2	0	SUPT16H	3385	chr14:21841497:-	PNP	31862	chr14:20944543:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	SUPT16H->SPT16_homolog,_facilitates_chromatin_remodeling_subunit,chr14:21819631-21852425:-,PNP->chr14:20937113-20945253:+,purine_nucleoside_phosphorylase	HCC1438_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	TTC28--GNB1L	2	0	TTC28	2523	chr22:29025540:-	GNB1L	46732	chr22:19776483:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	HCC1438_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	WDPCP--UGP2	2	0	WDPCP	6186	chr2:63815331:-	UGP2	50527	chr2:64109600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_INVERSION:-:+:[13097],WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-,UGP2->UDP-glucose_pyrophosphorylase_2,chr2:64068074-64118696:+	HCC1438_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	ZNF787--CBX1	2	0	ZNF787	1109	chr19:56632541:-	CBX1	13933	chr17:46154403:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	ZNF787->chr19:56598732-56632649:-,zinc_finger_protein_787,CBX1->chr17:46147414-46178883:-,chromobox_1	HCC1438_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	PRR16--CTD-2334D19.1	1	3	PRR16	5763	chr5:119952887:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	15	0	0.21	1	0.0096	0.0287	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HCC1438_LUNG	0.21	1	0.0383	FALSE	0	3	0	8	0	FALSE	ACH-000891
HCC1438_LUNG	PRR16--CTD-2334D19.1	1	3	PRR16	3559	chr5:119816988:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0096	0.0287	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HCC1438_LUNG	0.18	1	0.0383	FALSE	1	5	0	12	0	FALSE	ACH-000891
HCC1438_LUNG	PSPH--CCT6A	1	3	PSPH	1467	chr7:56118831:-	CCT6A	18220	chr7:56123317:+	ONLY_REF_SPLICE	YES	68	916	0.06	0	0.0096	0.0287	LOCAL_INVERSION:-:+:[26],PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	HCC1438_LUNG	0	0.06	0.0383	FALSE	0	0	0	2	0	FALSE	ACH-000891
HCC1438_LUNG	RP11-722M1.1--ARAP2	1	2	RP11-722M1.1	4366	chr4:36584279:-	ARAP2	13528	chr4:36231267:-	ONLY_REF_SPLICE	YES	11	5	0.21	0.38	0.0096	0.0192	RP11-722M1.1->chr4:36498159-36643522:-,ARAP2->ArfGAP_with_RhoGAP_domain,_ankyrin_repeat_and_PH_domain_2,Oncogene{Bushman},chr4:35949843-36246131:-	HCC1438_LUNG	0.21	0.38	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000891
HCC1438_LUNG	DANCR--SNX5	1	1	DANCR	1530	chr4:53579126:+	SNX5	10453	chr20:17941969:-	ONLY_REF_SPLICE	NO	201	451	0.01	0	0.0096	0.0096	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	HCC1438_LUNG	0	0.01	0.0192	FALSE	0	0	0	7	0	FALSE	ACH-000891
HCC1438_LUNG	GDAP1--RP11-758M4.1	1	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	26	1	0.07	0.67	0.0096	0.0096	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	HCC1438_LUNG	0.07	0.67	0.0192	TRUE	7	28	0	43	0	FALSE	ACH-000891
HCC1438_LUNG	JARID2--RPRD1A	1	1	JARID2	5780	chr6:15410596:+	RPRD1A	32925	chr18:33620828:-	ONLY_REF_SPLICE	YES	24	236	0.08	0.01	0.0096	0.0096	JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A	HCC1438_LUNG	0.01	0.08	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000891
HCC1438_LUNG	JARID2--RPRD1A	1	1	JARID2	5780	chr6:15410596:+	RPRD1A	33984	chr18:33613800:-	ONLY_REF_SPLICE	YES	24	190	0.08	0.01	0.0096	0.0096	JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A	HCC1438_LUNG	0.01	0.08	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000891
HCC1438_LUNG	MICAL3--CECR5	1	1	MICAL3	17825	chr22:18368644:-	CECR5	66906	chr22:17630635:-	ONLY_REF_SPLICE	NO	79	39	0.02	0.05	0.0096	0.0096	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,CECR5->Oncogene{Bushman},cat_eye_syndrome_chromosome_region,_candidate_5,chr22:17618401-17646177:-	HCC1438_LUNG	0.02	0.05	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000891
HCC1438_LUNG	OIP5-AS1--GALK2	1	1	OIP5-AS1	3111	chr15:41578298:+	GALK2	31051	chr15:49493359:+	ONLY_REF_SPLICE	YES	123	59	0.02	0.03	0.0096	0.0096	OIP5-AS1->OIP5_antisense_RNA_1,chr15:41576188-41601901:+,GALK2->chr15:49447853-49660066:+,galactokinase_2	HCC1438_LUNG	0.02	0.03	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000891
TOV21G_OVARY	TIMM23B--LINC00843	121	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.5667	0.2331	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TOV21G_OVARY	0.99	1	1.7998	TRUE	508	994	45	981	0	FALSE	ACH-000885
TOV21G_OVARY	TIMM23--RP11-464F9.1	68	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	393	5	0.15	0.93	0.8804	0.0388	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TOV21G_OVARY	0.15	0.93	0.9192	TRUE	519	3926	326	965	0	FALSE	ACH-000885
TOV21G_OVARY	MT-ND6--MT-TE	22	0	MT-ND6	1051	chrM:14623:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2848	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TOV21G_OVARY	1	1	0.2848	FALSE	499	1288	110	792	0	FALSE	ACH-000885
TOV21G_OVARY	RP11-96H19.1--RP11-446N19.1	16	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2072	0.0388	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TOV21G_OVARY	1	1	0.246	FALSE	515	4851	409	746	0	FALSE	ACH-000885
TOV21G_OVARY	MT-TA--MT-TC	16	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2072	0.0259	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TOV21G_OVARY	1	1	0.2331	FALSE	462	80	0	856	0	FALSE	ACH-000885
TOV21G_OVARY	PRKCSH--GNAI1	12	0	PRKCSH	11401	chr19:11560500:+	GNAI1	24910	chr7:79842032:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1554	0	PRKCSH->chr19:11546109-11561783:+,protein_kinase_C_substrate_80K-H,GNAI1->G_protein_subunit_alpha_i1,chr7:79763271-79848718:+	TOV21G_OVARY	1	1	0.1554	TRUE	0	0	0	1	0	TRUE	ACH-000885
TOV21G_OVARY	MT-ND6--MT-TE	9	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1165	0.0388	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TOV21G_OVARY	1	1	0.1553	FALSE	499	1288	110	792	0	FALSE	ACH-000885
TOV21G_OVARY	IGFBP7--MT-ND4L	8	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1036	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TOV21G_OVARY	1	1	0.1036	FALSE	1	0	0	30	0	FALSE	ACH-000885
TOV21G_OVARY	TMSB10--TMSB4X	6	1	TMSB10	1438	chr2:85133186:+	TMSB4X	6247	chrX:12994426:+	INCL_NON_REF_SPLICE	YES	948	2387	0.01	0	0.0777	0.0129	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	TOV21G_OVARY	0	0.01	0.0906	FALSE	0	1	0	17	1	FALSE	ACH-000885
TOV21G_OVARY	RNASET2--RPS6KA2	5	4	RNASET2	10057	chr6:167352383:-	RPS6KA2	22351	chr6:167271747:-	ONLY_REF_SPLICE	YES	473	0	0.02	1	0.0647	0.0518	{Klijn_CCL:Kidney=1,Cervix=1},NEIGHBORS[23053],RNASET2->Oncogene{Bushman},chr6:167342992-167370679:-,ribonuclease_T2,RPS6KA2->chr6:166822852-167319939:-,ribosomal_protein_S6_kinase_A2	TOV21G_OVARY	0.02	1	0.1165	FALSE	1	1	0	3	0	FALSE	ACH-000885
TOV21G_OVARY	FTH1--ACTB	5	2	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	8655	1	0	0.88	0.0647	0.0259	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	TOV21G_OVARY	0	0.88	0.0906	FALSE	1	0	0	97	0	FALSE	ACH-000885
TOV21G_OVARY	CTD-2337A12.1--CAST	5	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	28	1	0.18	0.0647	0.0129	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	TOV21G_OVARY	0.18	1	0.0776	TRUE	347	1186	183	220	0	FALSE	ACH-000885
TOV21G_OVARY	MT-ND6--MT-TE	3	7	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0.0906	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TOV21G_OVARY	1	1	0.1294	FALSE	499	1288	110	792	0	FALSE	ACH-000885
TOV21G_OVARY	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0518	0.0388	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TOV21G_OVARY	1	1	0.0906	FALSE	407	2205	196	549	0	FALSE	ACH-000885
TOV21G_OVARY	VIM-AS1--FTL	4	1	VIM-AS1	1589	chr10:17271396:-	FTL	9803	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	2104	0	0	1	0.0518	0.0129	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	TOV21G_OVARY	0	1	0.0647	FALSE	0	0	0	5	0	FALSE	ACH-000885
TOV21G_OVARY	FTH1--ACTB	4	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	TOV21G_OVARY	1	1	0.0518	TRUE	1	0	0	97	0	FALSE	ACH-000885
TOV21G_OVARY	HDGF--MT-ATP8	4	0	HDGF	9880	chr1:156713024:-	MT-ATP8	14064	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	0	HDGF->chr1:156711899-156736717:-,hepatoma-derived_growth_factor,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TOV21G_OVARY	1	1	0.0518	FALSE	0	0	0	3	0	FALSE	ACH-000885
TOV21G_OVARY	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0518	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TOV21G_OVARY	1	1	0.0518	FALSE	292	1546	117	613	0	FALSE	ACH-000885
TOV21G_OVARY	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0.0388	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TOV21G_OVARY	1	1	0.0776	FALSE	467	2173	244	435	0	FALSE	ACH-000885
TOV21G_OVARY	AP000350.4--PKM	3	1	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	4	1	0.5	0.0388	0.0129	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	TOV21G_OVARY	0.5	1	0.0517	TRUE	0	0	0	14	0	TRUE	ACH-000885
TOV21G_OVARY	AP000350.4--PKM	3	1	AP000350.4	3774	chr22:24236611:-	PKM	7428	chr15:72523509:-	INCL_NON_REF_SPLICE	YES	0	5	1	0.44	0.0388	0.0129	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	TOV21G_OVARY	0.44	1	0.0517	TRUE	0	0	0	14	0	TRUE	ACH-000885
TOV21G_OVARY	CMTM8--CMTM7	3	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	25	86	0.14	0.04	0.0388	0.0129	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	TOV21G_OVARY	0.04	0.14	0.0517	FALSE	118	557	29	88	0	FALSE	ACH-000885
TOV21G_OVARY	NRIP1--AF127936.7	3	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.21	1	0.0388	0.0129	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TOV21G_OVARY	0.21	1	0.0517	FALSE	164	806	69	479	0	FALSE	ACH-000885
TOV21G_OVARY	FTH1--ACTB	3	0	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0388	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	TOV21G_OVARY	1	1	0.0388	TRUE	1	0	0	97	0	FALSE	ACH-000885
TOV21G_OVARY	VTI1A--RP11-57H14.3	3	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0388	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	TOV21G_OVARY	1	1	0.0388	FALSE	272	151	14	158	0	FALSE	ACH-000885
TOV21G_OVARY	RNF2--SWT1	2	3	RNF2	1286	chr1:185014781:+	SWT1	32152	chr1:185240455:+	ONLY_REF_SPLICE	YES	33	6	0.13	0.45	0.0259	0.0388	NEIGHBORS[54472],RNF2->chr1:185014496-185071740:+,ring_finger_protein_2,SWT1->SWT1,_RNA_endoribonuclease_homolog,chr1:185126212-185260897:+	TOV21G_OVARY	0.13	0.45	0.0647	FALSE	0	0	0	1	0	FALSE	ACH-000885
TOV21G_OVARY	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	66	1	0.06	0.0259	0.0259	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	TOV21G_OVARY	0.06	1	0.0518	FALSE	16	356	14	466	0	FALSE	ACH-000885
TOV21G_OVARY	RCC1--GNAS	2	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TOV21G_OVARY	1	1	0.0259	TRUE	0	3	0	13	2	TRUE	ACH-000885
TOV21G_OVARY	RNASET2--RPS6KA2	1	4	RNASET2	12358	chr6:167347579:-	RPS6KA2	22351	chr6:167271747:-	ONLY_REF_SPLICE	YES	477	0	0.01	1	0.0129	0.0518	{Klijn_CCL:Kidney=1,Cervix=1},NEIGHBORS[23053],RNASET2->Oncogene{Bushman},chr6:167342992-167370679:-,ribonuclease_T2,RPS6KA2->chr6:166822852-167319939:-,ribosomal_protein_S6_kinase_A2	TOV21G_OVARY	0.01	1	0.0647	FALSE	0	0	0	2	0	FALSE	ACH-000885
TOV21G_OVARY	MIA3--YEATS2	1	1	MIA3	11662	chr1:222819027:+	YEATS2	53689	chr3:183503913:+	ONLY_REF_SPLICE	YES	27	57	0.07	0.03	0.0129	0.0129	MIA3->chr1:222791428-222841354:+,melanoma_inhibitory_activity_family_member_3,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+	TOV21G_OVARY	0.03	0.07	0.0258	TRUE	0	0	0	1	0	FALSE	ACH-000885
TOV21G_OVARY	RNASET2--RPS6KA2	1	1	RNASET2	10057	chr6:167352383:-	RPS6KA2	30155	chr6:166952272:-	ONLY_REF_SPLICE	NO	473	2	0	0.5	0.0129	0.0129	{Klijn_CCL:Kidney=1,Cervix=1},NEIGHBORS[23053],RNASET2->Oncogene{Bushman},chr6:167342992-167370679:-,ribonuclease_T2,RPS6KA2->chr6:166822852-167319939:-,ribosomal_protein_S6_kinase_A2	TOV21G_OVARY	0	0.5	0.0258	FALSE	1	0	0	3	0	FALSE	ACH-000885
TOV21G_OVARY	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	2	66	0.5	0.03	0.0129	0.0129	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	TOV21G_OVARY	0.03	0.5	0.0258	FALSE	0	48	1	163	0	FALSE	ACH-000885
TOV21G_OVARY	RP11-795F19.5--PQLC1	1	1	RP11-795F19.5	4610	chr18:77808193:+	PQLC1	32000	chr18:77664183:-	ONLY_REF_SPLICE	YES	0	83	1	0.02	0.0129	0.0129	LOCAL_INVERSION:+:-:[82682],RP11-795F19.5->chr18:77794346-77854968:+,PQLC1->PQ_loop_repeat_containing_1,chr18:77662420-77711664:-	TOV21G_OVARY	0.02	1	0.0258	TRUE	0	0	0	1	0	FALSE	ACH-000885
TOV21G_OVARY	TMSB10--TMSB4X	1	1	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	2974	4792	0	0	0.0129	0.0129	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	TOV21G_OVARY	0	0	0.0258	FALSE	0	1	0	17	1	FALSE	ACH-000885
UACC62_SKIN	KANSL1--ARL17B	36	8	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	9	17	0.83	0.72	0.4171	0.0927	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	UACC62_SKIN	0.72	0.83	0.5098	TRUE	181	1564	124	196	0	FALSE	ACH-000425
UACC62_SKIN	CTD-2023N9.1--CTD-2023N9.2	17	1	CTD-2023N9.1	1119	chr5:56691005:+	CTD-2023N9.2	11053	chr5:56910004:+	ONLY_REF_SPLICE	YES	23	10	0.44	0.64	0.1969	0.0116	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	UACC62_SKIN	0.44	0.64	0.2085	FALSE	0	0	0	9	0	FALSE	ACH-000425
UACC62_SKIN	TIMM23B--LINC00843	14	9	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1622	0.1043	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	UACC62_SKIN	1	1	0.2665	TRUE	508	994	45	981	0	FALSE	ACH-000425
UACC62_SKIN	MT-ND4--MT-ATP8	10	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1158	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UACC62_SKIN	1	1	0.1158	FALSE	230	198	14	283	0	FALSE	ACH-000425
UACC62_SKIN	AP000525.9--LA16c-60G3.6	8	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.0927	0.0116	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	UACC62_SKIN	0.64	1	0.1043	TRUE	0	42	0	133	42	FALSE	ACH-000425
UACC62_SKIN	MT-ATP6--MT-CO2	7	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	26	1	0.3	0.92	0.0811	0.0463	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	UACC62_SKIN	0.3	0.92	0.1274	FALSE	59	21	0	114	0	FALSE	ACH-000425
UACC62_SKIN	MCM5--TOM1	7	1	MCM5	18815	chr22:35819334:+	TOM1	39639	chr22:35741718:+	ONLY_REF_SPLICE	YES	129	13	0.06	0.38	0.0811	0.0116	LOCAL_REARRANGEMENT:+:[52071],MCM5->Oncogene{Bushman},chr22:35796056-35821423:+,minichromosome_maintenance_complex_component_5,TOM1->chr22:35695268-35743985:+,target_of_myb1_membrane_trafficking_protein	UACC62_SKIN	0.06	0.38	0.0927	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	MT-ATP6--MT-CO1	7	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	6322	10447	0	0	0.0811	0.0116	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	UACC62_SKIN	0	0	0.0927	FALSE	183	104	9	328	0	FALSE	ACH-000425
UACC62_SKIN	MT-ATP6--MT-CO1	7	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	6399	9955	0	0	0.0811	0.0116	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	UACC62_SKIN	0	0	0.0927	FALSE	183	104	9	328	0	FALSE	ACH-000425
UACC62_SKIN	MT-ND4--MT-ATP8	7	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0811	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UACC62_SKIN	1	1	0.0811	FALSE	230	198	14	283	0	FALSE	ACH-000425
UACC62_SKIN	MT-ATP6--MT-CO2	6	3	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	20	1	0.31	0.9	0.0695	0.0348	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	UACC62_SKIN	0.31	0.9	0.1043	FALSE	59	21	0	114	0	FALSE	ACH-000425
UACC62_SKIN	RP11-444D3.1--SOX5	6	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	15	1	0.38	0.0695	0.0348	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	UACC62_SKIN	0.38	1	0.1043	TRUE	477	1352	189	275	0	FALSE	ACH-000425
UACC62_SKIN	MT-ATP6--MT-CO2	5	4	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	26	1	0.26	0.9	0.0579	0.0463	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	UACC62_SKIN	0.26	0.9	0.1042	FALSE	59	21	0	114	0	FALSE	ACH-000425
UACC62_SKIN	MT-ATP6--MT-CO2	5	4	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	23	1	0.28	0.9	0.0579	0.0463	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	UACC62_SKIN	0.28	0.9	0.1042	FALSE	59	21	0	114	0	FALSE	ACH-000425
UACC62_SKIN	MT-ND4--MT-ATP8	6	0	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0695	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UACC62_SKIN	1	1	0.0695	FALSE	231	205	14	283	0	FALSE	ACH-000425
UACC62_SKIN	MT-ND4--MT-ATP8	6	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0695	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UACC62_SKIN	1	1	0.0695	FALSE	230	193	14	283	0	FALSE	ACH-000425
UACC62_SKIN	MT-ND4--MT-ATP8	4	6	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	6855	0	0	1	0.0463	0.0695	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UACC62_SKIN	0	1	0.1158	FALSE	231	217	16	283	0	FALSE	ACH-000425
UACC62_SKIN	MT-ND4--MT-ATP8	4	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6211	20	0	0.29	0.0463	0.0463	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UACC62_SKIN	0	0.29	0.0926	FALSE	231	217	16	283	0	FALSE	ACH-000425
UACC62_SKIN	MT-ND4--MT-ATP8	3	8	MT-ND4	2332	chrM:12091:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0.0927	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UACC62_SKIN	1	1	0.1275	FALSE	209	205	15	279	0	FALSE	ACH-000425
UACC62_SKIN	UST--SASH1	4	4	UST	5784	chr6:149285699:+	SASH1	26676	chr6:148808750:+	ONLY_REF_SPLICE	YES	10	9	0.44	0.47	0.0463	0.0463	UST->chr6:149068464-149398126:+,uronyl_2-sulfotransferase,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	UACC62_SKIN	0.44	0.47	0.0926	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	CTD-2023N9.1--CTD-2023N9.2	4	3	CTD-2023N9.1	1119	chr5:56691005:+	CTD-2023N9.2	7902	chr5:56869858:+	INCL_NON_REF_SPLICE	YES	23	0	0.23	1	0.0463	0.0348	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	UACC62_SKIN	0.23	1	0.0811	FALSE	0	0	0	6	0	FALSE	ACH-000425
UACC62_SKIN	CTD-2023N9.1--CTD-2023N9.2	4	3	CTD-2023N9.1	3408	chr5:56792744:+	CTD-2023N9.2	11053	chr5:56910004:+	ONLY_REF_SPLICE	YES	32	10	0.18	0.41	0.0463	0.0348	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	UACC62_SKIN	0.18	0.41	0.0811	FALSE	0	0	0	7	0	FALSE	ACH-000425
UACC62_SKIN	MT-ATP6--MT-CO2	4	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	17	1	0.29	0.88	0.0463	0.0348	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	UACC62_SKIN	0.29	0.88	0.0811	FALSE	59	21	0	114	0	FALSE	ACH-000425
UACC62_SKIN	MT-ND4--MT-ATP8	4	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	6555	2	0	0.78	0.0463	0.0348	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UACC62_SKIN	0	0.78	0.0811	FALSE	231	217	16	283	0	FALSE	ACH-000425
UACC62_SKIN	MT-ND4--MT-ATP8	3	6	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2139	20	0	0.31	0.0348	0.0695	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UACC62_SKIN	0	0.31	0.1043	FALSE	218	210	16	281	0	FALSE	ACH-000425
UACC62_SKIN	MT-ND4--MT-ATP8	3	6	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1309	20	0.01	0.31	0.0348	0.0695	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UACC62_SKIN	0.01	0.31	0.1043	FALSE	216	209	16	281	0	FALSE	ACH-000425
UACC62_SKIN	MT-ATP6--MT-CO2	3	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	26	1	0.21	0.88	0.0348	0.0463	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	UACC62_SKIN	0.21	0.88	0.0811	FALSE	59	21	0	114	0	FALSE	ACH-000425
UACC62_SKIN	MT-ND4--MT-ATP8	4	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UACC62_SKIN	1	1	0.0463	FALSE	230	193	14	283	0	FALSE	ACH-000425
UACC62_SKIN	MT-ND4--MT-ATP8	3	4	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	NO	6415	0	0	1	0.0348	0.0463	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UACC62_SKIN	0	1	0.0811	FALSE	231	217	16	283	0	FALSE	ACH-000425
UACC62_SKIN	MT-ND4--MT-ATP8	3	3	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	6453	0	0	1	0.0348	0.0348	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UACC62_SKIN	0	1	0.0696	FALSE	231	217	16	283	0	FALSE	ACH-000425
UACC62_SKIN	MT-ATP6--MT-CO1	3	2	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	6895	0	0	1	0.0348	0.0232	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	UACC62_SKIN	0	1	0.058	FALSE	182	97	9	327	0	FALSE	ACH-000425
UACC62_SKIN	MT-ATP6--MT-CO2	3	2	MT-ATP6	1123	chrM:8649:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	20	4	0.2	0.56	0.0348	0.0232	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	UACC62_SKIN	0.2	0.56	0.058	FALSE	59	21	0	114	0	FALSE	ACH-000425
UACC62_SKIN	MT-ND4--MT-ATP8	3	2	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	NO	7536	0	0	1	0.0348	0.0232	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UACC62_SKIN	0	1	0.058	FALSE	231	217	16	283	0	FALSE	ACH-000425
UACC62_SKIN	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	6352	8571	0	0	0.0348	0.0116	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	UACC62_SKIN	0	0	0.0464	FALSE	183	104	9	328	0	FALSE	ACH-000425
UACC62_SKIN	MT-ND4--MT-ATP8	3	1	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	7721	469	0	0.01	0.0348	0.0116	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UACC62_SKIN	0	0.01	0.0464	FALSE	231	217	16	283	0	FALSE	ACH-000425
UACC62_SKIN	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0.0116	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	UACC62_SKIN	1	1	0.0464	TRUE	458	1351	185	561	0	FALSE	ACH-000425
UACC62_SKIN	CANX--IL13RA2	3	0	CANX	19887	chr5:179155764:+	IL13RA2	33996	chrX:114242557:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	CANX->calnexin,chr5:179105629-179157926:+,IL13RA2->chrX:114238538-114254540:-,interleukin_13_receptor_subunit_alpha_2	UACC62_SKIN	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	IGF2R--AIMP1	3	0	IGF2R	6108	chr6:160445701:+	AIMP1	61500	chr4:107268754:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor,AIMP1->aminoacyl_tRNA_synthetase_complex-interacting_multifunctional_protein_1,chr4:107236701-107270383:+	UACC62_SKIN	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	MT-ND4--MT-ATP8	3	0	MT-ND4	1285	chrM:11044:+	MT-ATP8	5399	chrM:8386:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UACC62_SKIN	1	1	0.0348	FALSE	231	205	14	283	0	FALSE	ACH-000425
UACC62_SKIN	MT-ND4--MT-ATP8	3	0	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UACC62_SKIN	1	1	0.0348	FALSE	231	204	14	283	0	FALSE	ACH-000425
UACC62_SKIN	RPS11--CPNE1	3	0	RPS11	1921	chr19:50000542:+	CPNE1	13658	chr20:34219229:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	GTEx&tcga_normals:1/3694=0.03%,RPS11->chr19:49999622-50002946:+,ribosomal_protein_S11,CPNE1->chr20:34213953-34252878:-,copine_1	UACC62_SKIN	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	SERBP1P5--SLC45A2	3	0	SERBP1P5	1320	chr4:79102881:-	SLC45A2	9127	chr5:33963887:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0348	0	SERBP1P5->SERPINE1_mRNA_binding_protein_1_pseudogene_5,chr4:79102020-79103200:-,SLC45A2->chr5:33944721-33984835:-,solute_carrier_family_45_member_2	UACC62_SKIN	1	1	0.0348	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	SUMF2--CCT6A	3	0	SUMF2	3658	chr7:56140804:+	CCT6A	20326	chr7:56127962:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0348	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[13],SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	UACC62_SKIN	1	1	0.0348	TRUE	0	5	0	5	0	TRUE	ACH-000425
UACC62_SKIN	BAHD1--C9orf3	2	0	BAHD1	2302	chr15:40733467:+	C9orf3	51306	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	BAHD1->bromo_adjacent_homology_domain_containing_1,chr15:40731920-40760441:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	C12orf76--SUZ12	2	0	C12orf76	1265	chr12:110511227:-	SUZ12	27052	chr17:30303540:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	C12orf76->chr12:110465872-110511491:-,chromosome_12_open_reading_frame_76,SUZ12->Oncogene{Bushman},SUZ12_polycomb_repressive_complex_2_subunit,chr17:30264037-30328064:+	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	CCND1--BRD3	2	0	CCND1	3386	chr11:69458759:+	BRD3	15603	chr9:136918712:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,BRD3->Oncogene{Bushman},bromodomain_containing_3,chr9:136895427-136933657:-	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	CDK5RAP1--PHF14	2	0	CDK5RAP1	2458	chr20:31984567:-	PHF14	45270	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	CDK5RAP1->CDK5_regulatory_subunit_associated_protein_1,chr20:31946645-31989367:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	CPNE8--RP11-396F22.1	2	0	CPNE8	2945	chr12:39299239:-	RP11-396F22.1	34932	chr12:39303112:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	NEIGHBORS_OVERLAP:-:+:[979],CPNE8->chr12:39040624-39301232:-,copine_8,RP11-396F22.1->chr12:39300253-39303394:+	UACC62_SKIN	1	1	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000425
UACC62_SKIN	DLC1--FDFT1	2	0	DLC1	2057	chr8:13372111:-	FDFT1	40207	chr8:11667176:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	DLC1->DLC1_Rho_GTPase_activating_protein,Oncogene{Bushman},chr8:12940870-13373167:-,FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	HES7--SP100	2	0	HES7	1050	chr17:8027361:-	SP100	11310	chr2:231307652:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	HES7->chr17:8023908-8027410:-,hes_family_bHLH_transcription_factor_7,SP100->SP100_nuclear_antigen,chr2:231280657-231408805:+	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	HMOX2--HMGB1	2	0	HMOX2	1158	chr16:4524848:+	HMGB1	21359	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	HMOX2->chr16:4524691-4560348:+,heme_oxygenase_2,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	INVS--ERP44	2	0	INVS	5175	chr9:102888831:+	ERP44	34311	chr9:102784508:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[216],INVS->chr9:102861538-103063282:+,inversin,ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44	UACC62_SKIN	1	1	0.0232	TRUE	0	1	0	1	0	TRUE	ACH-000425
UACC62_SKIN	INVS--ERP44	2	0	INVS	5175	chr9:102888831:+	ERP44	31082	chr9:102822454:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[216],INVS->chr9:102861538-103063282:+,inversin,ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	3	0	TRUE	ACH-000425
UACC62_SKIN	MLXIP--PSMA7	2	0	MLXIP	7315	chr12:122616930:+	PSMA7	29015	chr20:60713346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	MLXIP->MLX_interacting_protein,chr12:122516628-122631894:+,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	RP11-206L10.11--CNKSR1	2	0	RP11-206L10.11	1168	chr1:763155:+	CNKSR1	23167	chr1:26508348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	RP11-206L10.11->chr1:762988-794826:+,CNKSR1->chr1:26503894-26516377:+,connector_enhancer_of_kinase_suppressor_of_Ras_1	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	TERF2--CPSF3	2	0	TERF2	4649	chr16:69418483:-	CPSF3	37965	chr2:9611472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TERF2->chr16:69389464-69442474:-,telomeric_repeat_binding_factor_2,CPSF3->chr2:9563697-9613230:+,cleavage_and_polyadenylation_specific_factor_3	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	TPRG1--CCDC50	2	0	TPRG1	13156	chr3:188850486:+	CCDC50	39579	chr3:191074877:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1,CCDC50->chr3:191046866-191116459:+,coiled-coil_domain_containing_50	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	TRIM14--BAG1	2	0	TRIM14	1231	chr9:100881264:-	BAG1	22469	chr9:33259031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TRIM14->chr9:100831557-100881494:-,tripartite_motif_containing_14,BAG1->BCL2_associated_athanogene_1,Oncogene{Bushman},chr9:33247818-33264761:-	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	TYR--SEC24D	2	0	TYR	3538	chr11:88924586:+	SEC24D	20774	chr4:119736881:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	TYR->chr11:88910620-89028927:+,tyrosinase,SEC24D->SEC24_homolog_D,_COPII_coat_complex_component,chr4:119643978-119759838:-	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	WASH5P--DHX34	2	0	WASH5P	3129	chr19:66346:-	DHX34	13443	chr19:47856011:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	WASH5P->WAS_protein_family_homolog_5_pseudogene,chr19:60105-71626:-,DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	XPO5--SAAL1	2	0	XPO5	20449	chr6:43514308:-	SAAL1	45940	chr11:18103050:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	XPO5->chr6:43490072-43543812:-,exportin_5,SAAL1->chr11:18091482-18127638:-,serum_amyloid_A_like_1	UACC62_SKIN	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	XRCC5--RPL37A	2	0	XRCC5	2602	chr2:216974180:+	RPL37A	31413	chr2:217363993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	UACC62_SKIN	1	1	0.0232	TRUE	1	1	0	8	1	TRUE	ACH-000425
UACC62_SKIN	KANSL1--ARL17B	1	3	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	9	17	0.31	0.19	0.0116	0.0348	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	UACC62_SKIN	0.19	0.31	0.0464	TRUE	105	90	7	93	0	FALSE	ACH-000425
UACC62_SKIN	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	19	1	0.17	0.0116	0.0348	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	UACC62_SKIN	0.17	1	0.0464	TRUE	160	277	29	98	0	FALSE	ACH-000425
UACC62_SKIN	UST--SASH1	1	3	UST	5784	chr6:149285699:+	SASH1	27778	chr6:148835460:+	ONLY_REF_SPLICE	YES	10	8	0.29	0.33	0.0116	0.0348	UST->chr6:149068464-149398126:+,uronyl_2-sulfotransferase,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	UACC62_SKIN	0.29	0.33	0.0464	TRUE	0	0	0	1	0	TRUE	ACH-000425
UACC62_SKIN	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	15	1	0.17	0.0116	0.0232	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	UACC62_SKIN	0.17	1	0.0348	TRUE	274	363	69	150	0	FALSE	ACH-000425
UACC62_SKIN	KIF26B--EFCAB2	1	1	KIF26B	11092	chr1:245704252:+	EFCAB2	37294	chr1:245165423:+	ONLY_REF_SPLICE	YES	1	1	0.67	0.67	0.0116	0.0116	LOCAL_REARRANGEMENT:+:[27821],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,EFCAB2->EF-hand_calcium_binding_domain_2,chr1:245133007-245290466:+	UACC62_SKIN	0.67	0.67	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000425
SNU410_PANCREAS	TIMM23B--LINC00843	126	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1863	0.2354	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU410_PANCREAS	1	1	1.4217	TRUE	508	994	45	981	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-TA--MT-TC	78	12	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7344	0.113	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU410_PANCREAS	1	1	0.8474	FALSE	462	80	0	856	0	FALSE	ACH-000517
SNU410_PANCREAS	TIMM23--RP11-464F9.1	74	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	217	3	0.26	0.96	0.6967	0.0282	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU410_PANCREAS	0.26	0.96	0.7249	TRUE	519	3926	326	965	0	FALSE	ACH-000517
SNU410_PANCREAS	ZNF654--HMGB2	48	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4519	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU410_PANCREAS	1	1	0.4519	TRUE	0	0	0	518	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND6--MT-TE	42	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3954	0.0377	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU410_PANCREAS	1	1	0.4331	FALSE	499	1288	110	792	0	FALSE	ACH-000517
SNU410_PANCREAS	RP11-96H19.1--RP11-446N19.1	20	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1883	0.0659	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU410_PANCREAS	1	1	0.2542	FALSE	515	4851	409	746	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	8	52	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	7	7	0.9	0.9	0.0753	0.4896	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	0.9	0.9	0.5649	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	4	64	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	5	0	0.93	1	0.0377	0.6026	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	0.93	1	0.6403	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND6--MT-TE	19	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1789	0.0377	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU410_PANCREAS	1	1	0.2166	FALSE	499	1288	110	792	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	3	64	MT-CO3	1222	chrM:9428:+	MT-ATP6	4744	chrM:8486:+	INCL_NON_REF_SPLICE	YES	5	0	0.93	1	0.0282	0.6026	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	0.93	1	0.6308	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	HSP90AB1--MT-RNR2	18	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2169	0	0.01	1	0.1695	0.0094	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU410_PANCREAS	0.01	1	0.1789	FALSE	13	9	0	364	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND6--MT-TE	15	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.1412	0.113	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU410_PANCREAS	0.9	1	0.2542	FALSE	499	1288	110	792	0	FALSE	ACH-000517
SNU410_PANCREAS	NRIP1--AF127936.7	16	6	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.92	1	0.1506	0.0565	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU410_PANCREAS	0.92	1	0.2071	FALSE	292	1546	117	613	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	4	51	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	0	30	1	0.65	0.0377	0.4802	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	0.65	1	0.5179	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	3	53	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	7	55	0.89	0.5	0.0282	0.499	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	0.5	0.89	0.5272	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	4	49	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.93	0.0377	0.4613	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	0.93	1	0.499	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	3	50	MT-CO3	1150	chrM:9356:+	MT-ATP6	5349	chrM:9091:+	INCL_NON_REF_SPLICE	YES	7	1	0.88	0.98	0.0282	0.4708	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	0.88	0.98	0.499	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	3	50	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.91	0.0282	0.4708	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	0.91	1	0.499	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-TA--MT-TC	13	10	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1224	0.0942	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU410_PANCREAS	1	1	0.2166	FALSE	462	80	0	856	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-TA--MT-TC	9	15	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0847	0.1412	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU410_PANCREAS	1	1	0.2259	FALSE	462	80	0	856	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	3	37	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0.3484	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	1	1	0.3766	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	12	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	7	0	0.65	1	0.113	0.0094	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	0.65	1	0.1224	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	RP11-680G10.1--GSE1	11	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	29	1	0.36	0.1036	0.0471	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU410_PANCREAS	0.36	1	0.1507	TRUE	465	1949	224	605	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND4--MT-ATP8	12	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.113	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU410_PANCREAS	1	1	0.113	FALSE	231	205	14	283	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND4--MT-ATP8	12	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.113	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU410_PANCREAS	1	1	0.113	FALSE	230	193	14	283	0	FALSE	ACH-000517
SNU410_PANCREAS	RP11-680G10.1--GSE1	10	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.89	0.0942	0.0659	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU410_PANCREAS	0.89	1	0.1601	TRUE	458	1351	185	561	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	5	24	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.0471	0.226	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	0.97	1	0.2731	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND6--MT-TE	7	16	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0659	0.1506	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU410_PANCREAS	0.88	1	0.2165	FALSE	499	1288	110	792	0	FALSE	ACH-000517
SNU410_PANCREAS	FAM195B--ARHGDIA	10	1	FAM195B	1065	chr17:79791114:-	ARHGDIA	10767	chr17:79827833:-	ONLY_REF_SPLICE	YES	0	69	1	0.14	0.0942	0.0094	LOCAL_REARRANGEMENT:-:[34419],FAM195B->chr17:79780287-79791178:-,ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-	SNU410_PANCREAS	0.14	1	0.1036	TRUE	0	0	0	1	0	TRUE	ACH-000517
SNU410_PANCREAS	RP11-123O10.4--GRIP1	9	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0847	0.0188	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU410_PANCREAS	1	1	0.1035	FALSE	416	2512	207	587	0	FALSE	ACH-000517
SNU410_PANCREAS	C15orf57--CBX3	7	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	46	47	0.25	0.24	0.0659	0.0753	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU410_PANCREAS	0.24	0.25	0.1412	TRUE	267	562	48	632	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	3	24	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.82	0.0282	0.226	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	0.82	1	0.2542	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND6--MT-TE	4	19	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.1789	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU410_PANCREAS	1	1	0.2166	FALSE	499	1288	110	792	0	FALSE	ACH-000517
SNU410_PANCREAS	EEF2--RPS28	8	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0753	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SNU410_PANCREAS	1	1	0.0753	TRUE	0	0	0	100	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	4	13	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.1224	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	1	1	0.1601	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	PRR16--CTD-2334D19.1	7	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	23	0	0.26	1	0.0659	0.0094	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SNU410_PANCREAS	0.26	1	0.0753	FALSE	56	216	12	147	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	3	16	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0282	0.1506	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	1	1	0.1788	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND4--MT-ATP8	7	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU410_PANCREAS	1	1	0.0659	FALSE	230	198	14	283	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU410_PANCREAS	1	1	0.0659	FALSE	462	80	0	856	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	5	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	7	0	0.61	1	0.0471	0.0565	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	0.61	1	0.1036	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND4--MT-ATP8	6	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12291	4	0	0.67	0.0565	0.0188	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU410_PANCREAS	0	0.67	0.0753	FALSE	231	217	16	283	0	FALSE	ACH-000517
SNU410_PANCREAS	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2194	0	0	1	0.0565	0.0094	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU410_PANCREAS	0	1	0.0659	FALSE	13	9	0	364	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND4--MT-ATP8	6	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	14155	1	0	0.88	0.0565	0.0094	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU410_PANCREAS	0	0.88	0.0659	FALSE	231	205	14	283	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND4--MT-ATP8	6	1	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	12387	1421	0	0	0.0565	0.0094	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU410_PANCREAS	0	0	0.0659	FALSE	231	217	16	283	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	5	4	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	7	0	0.56	1	0.0471	0.0377	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	0.56	1	0.0848	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND4--MT-ATP8	5	4	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2302	43	0	0.17	0.0471	0.0377	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU410_PANCREAS	0	0.17	0.0848	FALSE	216	209	16	281	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	5	3	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	7	0	0.53	1	0.0471	0.0282	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	0.53	1	0.0753	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND4--MT-ATP8	5	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12016	43	0	0.16	0.0471	0.0282	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU410_PANCREAS	0	0.16	0.0753	FALSE	231	217	16	283	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND6--MT-TE	4	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.0659	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU410_PANCREAS	1	1	0.1036	FALSE	499	1288	110	792	0	FALSE	ACH-000517
SNU410_PANCREAS	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0.0659	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU410_PANCREAS	1	1	0.1036	FALSE	407	2205	196	549	0	FALSE	ACH-000517
SNU410_PANCREAS	C15orf57--CBX3	4	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	45	49	0.18	0.17	0.0377	0.0565	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU410_PANCREAS	0.17	0.18	0.0942	TRUE	267	562	48	632	0	FALSE	ACH-000517
SNU410_PANCREAS	COL6A1--GNB2L1	5	1	COL6A1	16113	chr21:47421300:+	GNB2L1	29783	chr5:180666177:-	ONLY_REF_SPLICE	YES	1201	4822	0	0	0.0471	0.0094	GTEx&tcga_normals:1/3694=0.03%,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1,GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-	SNU410_PANCREAS	0	0	0.0565	FALSE	0	0	0	1	0	FALSE	ACH-000517
SNU410_PANCREAS	SLC20A2--MATR3	4	5	SLC20A2	1389	chr8:42396681:-	MATR3	28314	chr5:138611810:+	ONLY_REF_SPLICE	YES	69	2	0.12	0.82	0.0377	0.0471	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,MATR3->chr5:138609441-138667360:+,matrin_3	SNU410_PANCREAS	0.12	0.82	0.0848	TRUE	0	0	0	1	0	TRUE	ACH-000517
SNU410_PANCREAS	MT-CO2--S100A6	5	0	MT-CO2	1233	chrM:7818:+	S100A6	4935	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	SNU410_PANCREAS	1	1	0.0471	FALSE	0	0	0	4	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND4--MT-ATP8	4	3	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12247	43	0	0.14	0.0377	0.0282	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU410_PANCREAS	0	0.14	0.0659	FALSE	231	217	16	283	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND4--MT-ATP8	4	3	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	12289	0	0	1	0.0377	0.0282	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU410_PANCREAS	0	1	0.0659	FALSE	231	217	16	283	0	FALSE	ACH-000517
SNU410_PANCREAS	NRIP1--AF127936.7	3	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.43	1	0.0282	0.0565	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU410_PANCREAS	0.43	1	0.0847	FALSE	164	806	69	479	0	FALSE	ACH-000517
SNU410_PANCREAS	NRIP1--AF127936.7	3	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.47	1	0.0282	0.0565	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU410_PANCREAS	0.47	1	0.0847	FALSE	125	705	46	456	0	FALSE	ACH-000517
SNU410_PANCREAS	LARGE--P2RX6P	4	1	LARGE	12148	chr22:34022228:-	P2RX6P	41653	chr22:21389725:-	ONLY_REF_SPLICE	YES	7	1	0.42	0.83	0.0377	0.0094	LARGE->chr22:33558212-34318829:-,like-glycosyltransferase,P2RX6P->chr22:21389532-21399306:-,purinergic_receptor_P2X_6_pseudogene	SNU410_PANCREAS	0.42	0.83	0.0471	TRUE	0	0	0	1	0	TRUE	ACH-000517
SNU410_PANCREAS	MT-ND4--MT-ATP8	4	0	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU410_PANCREAS	1	1	0.0377	FALSE	230	197	14	283	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1014	chrM:14660:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU410_PANCREAS	1	1	0.0377	FALSE	499	1288	110	792	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU410_PANCREAS	1	1	0.0377	FALSE	499	1288	110	792	0	FALSE	ACH-000517
SNU410_PANCREAS	PFKM--MT-ND4L	4	0	PFKM	16513	chr12:48531603:+	MT-ND4L	27661	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	PFKM->chr12:48498922-48540187:+,phosphofructokinase,_muscle,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU410_PANCREAS	1	1	0.0377	FALSE	0	0	0	8	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	3	3	MT-CO3	1149	chrM:9355:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	7	0	0.46	1	0.0282	0.0282	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	0.46	1	0.0564	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	RP11-120D5.1--MID1	3	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	15	0.71	0.25	0.0282	0.0188	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU410_PANCREAS	0.25	0.71	0.047	FALSE	16	356	14	466	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND4--MT-ATP8	3	1	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	13993	0	0	1	0.0282	0.0094	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU410_PANCREAS	0	1	0.0376	FALSE	231	217	16	283	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND4--MT-ATP8	3	1	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	14173	0	0	1	0.0282	0.0094	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU410_PANCREAS	0	1	0.0376	FALSE	231	205	14	283	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND4--MT-ATP8	3	1	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	11907	0	0	1	0.0282	0.0094	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU410_PANCREAS	0	1	0.0376	FALSE	231	217	16	283	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND4--MT-ATP8	3	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	12016	1831	0	0	0.0282	0.0094	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU410_PANCREAS	0	0	0.0376	FALSE	231	217	16	283	0	FALSE	ACH-000517
SNU410_PANCREAS	RP11-114H23.1--RP11-114H23.2	3	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0.0094	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU410_PANCREAS	1	1	0.0376	FALSE	81	155	12	160	0	FALSE	ACH-000517
SNU410_PANCREAS	AHNAK2--MT-CO1	3	0	AHNAK2	9479	chr14:105417732:-	MT-CO1	27063	chrM:6336:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	AHNAK2->AHNAK_nucleoprotein_2,chr14:105403581-105444694:-,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU410_PANCREAS	1	1	0.0282	FALSE	0	0	0	1	0	FALSE	ACH-000517
SNU410_PANCREAS	AHNAK2--MT-CO1	3	0	AHNAK2	16894	chr14:105410317:-	MT-CO1	27053	chrM:6326:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	AHNAK2->AHNAK_nucleoprotein_2,chr14:105403581-105444694:-,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU410_PANCREAS	1	1	0.0282	FALSE	0	0	0	1	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU410_PANCREAS	1	1	0.0282	FALSE	189	492	56	216	0	FALSE	ACH-000517
SNU410_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU410_PANCREAS	1	1	0.0282	FALSE	499	1288	110	792	0	FALSE	ACH-000517
SNU410_PANCREAS	RP3-414A15.10--ELMSAN1	3	0	RP3-414A15.10	1280	chr14:74100365:-	ELMSAN1	16369	chr14:74196688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	LOCAL_REARRANGEMENT:-:[81181],RP3-414A15.10->chr14:74083412-74100644:-,ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-	SNU410_PANCREAS	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000517
SNU410_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0094	0.0659	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU410_PANCREAS	1	1	0.0753	FALSE	192	492	57	212	0	FALSE	ACH-000517
SNU410_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0094	0.0659	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU410_PANCREAS	1	1	0.0753	FALSE	467	2173	244	435	0	FALSE	ACH-000517
SNU410_PANCREAS	DNAJC25--UGCG	2	1	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	121	234	0.02	0.01	0.0188	0.0094	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	SNU410_PANCREAS	0.01	0.02	0.0282	FALSE	50	73	10	50	0	FALSE	ACH-000517
SNU410_PANCREAS	BSG--SLC16A3	2	0	BSG	2405	chr19:572701:+	SLC16A3	20725	chr17:80193859:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3	SNU410_PANCREAS	1	1	0.0188	TRUE	1	0	0	1	0	TRUE	ACH-000517
SNU410_PANCREAS	GGACT--PCCA	2	0	GGACT	3102	chr13:101236079:-	PCCA	40151	chr13:101179929:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	SNU410_PANCREAS	1	1	0.0188	TRUE	7	15	0	10	0	FALSE	ACH-000517
SNU410_PANCREAS	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU410_PANCREAS	1	1	0.0188	FALSE	7	44	2	41	0	FALSE	ACH-000517
SNU410_PANCREAS	RP5-1158E12.3--CNPPD1	2	0	RP5-1158E12.3	3112	chrX:45708809:-	CNPPD1	8693	chr2:220041569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	RP5-1158E12.3->chrX:45707328-45710920:-,CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1	SNU410_PANCREAS	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000517
SNU410_PANCREAS	XRCC5--RPL37A	2	0	XRCC5	2602	chr2:216974180:+	RPL37A	31413	chr2:217363993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	SNU410_PANCREAS	1	1	0.0188	TRUE	1	1	0	8	1	TRUE	ACH-000517
SNU410_PANCREAS	SLC20A2--MATR3	1	3	SLC20A2	1389	chr8:42396681:-	MATR3	44309	chr5:138650364:+	ONLY_REF_SPLICE	YES	69	213	0.05	0.02	0.0094	0.0282	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,MATR3->chr5:138609441-138667360:+,matrin_3	SNU410_PANCREAS	0.02	0.05	0.0376	TRUE	0	0	0	1	0	FALSE	ACH-000517
SNU410_PANCREAS	ANLN--CRYGS	1	1	ANLN	20468	chr7:36466637:+	CRYGS	34312	chr3:186257386:-	ONLY_REF_SPLICE	YES	701	1	0	0.67	0.0094	0.0094	ANLN->Oncogene{Bushman},anillin_actin_binding_protein,chr7:36429415-36493400:+,CRYGS->chr3:186256230-186264491:-,crystallin_gamma_S	SNU410_PANCREAS	0	0.67	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000517
SNU410_PANCREAS	PILRB--GATS	1	1	PILRB	5128	chr7:99947510:+	GATS	25912	chr7:99810756:-	ONLY_REF_SPLICE	YES	114	11	0.02	0.15	0.0094	0.0094	GTEx&tcga_normals:22/3694=0.60%,GTEx_FI:{Muscle=[count:2=pct:0.9],Brain=[count:1=pct:0.2]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellum=1},LOCAL_INVERSION:+:-,chr7:[63900],PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta,GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-	SNU410_PANCREAS	0.02	0.15	0.0188	TRUE	0	0	0	1	0	FALSE	ACH-000517
SNU410_PANCREAS	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	8	15	0.2	0.12	0.0094	0.0094	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU410_PANCREAS	0.12	0.2	0.0188	FALSE	0	48	1	163	0	FALSE	ACH-000517
SNU410_PANCREAS	STK3--VPS13B	1	1	STK3	18604	chr8:99718695:-	VPS13B	40598	chr8:100050651:+	ONLY_REF_SPLICE	YES	55	22	0.04	0.08	0.0094	0.0094	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Heart_-_Left_Ventricle=1},LOCAL_INVERSION:-:+:[70439],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast)	SNU410_PANCREAS	0.04	0.08	0.0188	TRUE	0	0	0	1	0	FALSE	ACH-000517
EFM19_BREAST	ZFYVE9--USP33	132	62	ZFYVE9	3242	chr1:52698948:+	USP33	48727	chr1:78178966:-	ONLY_REF_SPLICE	YES	4	21	0.98	0.9	1.4772	0.6938	{Klijn_CCL:Breast=1},ZFYVE9->chr1:52608046-52812358:+,zinc_finger_FYVE-type_containing_9,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	EFM19_BREAST	0.9	0.98	2.171	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	FBRS--ZNF771	107	66	FBRS	10080	chr16:30678943:+	ZNF771	23047	chr16:30440201:+	ONLY_REF_SPLICE	YES	269	0	0.39	1	1.1974	0.7386	FBRS->chr16:30669752-30682135:+,fibrosin,ZNF771->chr16:30418618-30440920:+,zinc_finger_protein_771	EFM19_BREAST	0.39	1	1.936	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	TIMM23B--LINC00843	83	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.9289	0.2462	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EFM19_BREAST	0.98	1	1.1751	TRUE	508	994	45	981	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND1--MT-RNR2	79	2	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	NO	45	59	0.64	0.58	0.8841	0.0224	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFM19_BREAST	0.58	0.64	0.9065	FALSE	92	22	4	61	0	FALSE	ACH-000330
EFM19_BREAST	THRAP3--HCG20	77	0	THRAP3	1090	chr1:36690106:+	HCG20	22389	chr6:30756468:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.8617	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,HCG20->HLA_complex_group_20_(non-protein_coding),chr6:30734602-30760027:+	EFM19_BREAST	1	1	0.8617	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	KIRREL--ZFYVE9	66	42	KIRREL	1456	chr1:157963518:+	ZFYVE9	24499	chr1:52703160:+	ONLY_REF_SPLICE	YES	5	5	0.96	0.96	0.7386	0.47	{Klijn_CCL:Breast=1},KIRREL->chr1:157963063-158070052:+,kin_of_IRRE_like_(Drosophila),ZFYVE9->chr1:52608046-52812358:+,zinc_finger_FYVE-type_containing_9	EFM19_BREAST	0.96	0.96	1.2086	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MT-TA--MT-TC	57	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6379	0.056	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFM19_BREAST	1	1	0.6939	FALSE	462	80	0	856	0	FALSE	ACH-000330
EFM19_BREAST	TIMM23--RP11-464F9.1	54	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	203	31	0.22	0.65	0.6043	0.0336	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EFM19_BREAST	0.22	0.65	0.6379	TRUE	519	3926	326	965	0	FALSE	ACH-000330
EFM19_BREAST	WBP1L--CCDC147-AS1	39	12	WBP1L	3446	chr10:104557852:+	CCDC147-AS1	13737	chr10:106111685:-	ONLY_REF_SPLICE	YES	58	0	0.47	1	0.4365	0.1343	WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+,CCDC147-AS1->chr10:106111349-106113333:-	EFM19_BREAST	0.47	1	0.5708	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	31	34	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4	0	0.94	1	0.3469	0.3805	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	0.94	1	0.7274	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	34	17	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4176	14	0.01	0.78	0.3805	0.1902	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	0.01	0.78	0.5707	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	CRLF3--CHD9	34	14	CRLF3	3874	chr17:29130919:-	CHD9	32448	chr16:53256556:+	ONLY_REF_SPLICE	YES	21	215	0.7	0.18	0.3805	0.1567	CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3,CHD9->Oncogene{Bushman},chr16:53088945-53363062:+,chromodomain_helicase_DNA_binding_protein_9	EFM19_BREAST	0.18	0.7	0.5372	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MT-ND6--MT-TE	37	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.4141	0.0224	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM19_BREAST	0.97	1	0.4365	FALSE	499	1288	110	792	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	6	110	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	19	2	0.86	0.98	0.0671	1.231	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	0.86	0.98	1.2981	FALSE	344	826	44	306	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND6--MT-TE	31	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.3469	0.0895	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM19_BREAST	0.95	1	0.4364	FALSE	499	1288	110	792	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	3	113	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	26	0	0.82	1	0.0336	1.2646	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	0.82	1	1.2982	FALSE	344	826	44	306	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	3	107	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	17	2	0.87	0.98	0.0336	1.1974	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	0.87	0.98	1.231	FALSE	344	826	44	306	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	4	102	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	16	0	0.87	1	0.0448	1.1415	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	0.87	1	1.1863	FALSE	344	826	44	306	0	FALSE	ACH-000330
EFM19_BREAST	RP11-680G10.1--GSE1	27	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	81	1	0.3	0.3022	0.0895	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	EFM19_BREAST	0.3	1	0.3917	TRUE	465	1949	224	605	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	9	69	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	7	2	0.92	0.97	0.1007	0.7722	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	0.92	0.97	0.8729	FALSE	344	821	44	306	0	FALSE	ACH-000330
EFM19_BREAST	OR51S1--TP53I11	25	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2798	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	EFM19_BREAST	1	1	0.2798	TRUE	402	216	10	229	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND6--MT-ND5	23	5	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	4095	1	0.01	0.2574	0.056	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	EFM19_BREAST	0.01	1	0.3134	FALSE	101	855	57	72	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND3--MT-ATP8	24	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2686	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	1	1	0.2686	FALSE	351	233	23	137	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	20	15	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6610	85	0.01	0.29	0.2238	0.1679	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	0.01	0.29	0.3917	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	4	67	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	19	0	0.79	1	0.0448	0.7498	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	0.79	1	0.7946	FALSE	344	826	44	306	0	FALSE	ACH-000330
EFM19_BREAST	PPME1--AP000769.1	18	8	PPME1	5347	chr11:73933414:+	AP000769.1	25333	chr11:65233556:+	ONLY_REF_SPLICE	YES	37	0	0.41	1	0.2014	0.0895	PPME1->chr11:73882144-73965748:+,protein_phosphatase_methylesterase_1,AP000769.1->chr11:65222728-65234028:+	EFM19_BREAST	0.41	1	0.2909	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	PIGL--PIPOX	17	8	PIGL	14244	chr17:16230219:+	PIPOX	34742	chr17:27381563:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1902	0.0895	PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L,PIPOX->chr17:27277531-27384234:+,pipecolic_acid_and_sarcosine_oxidase	EFM19_BREAST	1	1	0.2797	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	SLX4IP--PI3	14	15	SLX4IP	2207	chr20:10438879:+	PI3	13907	chr20:43803482:+	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.1567	0.1679	SLX4IP->SLX4_interacting_protein,chr20:10415951-10617477:+,PI3->chr20:43803517-43805185:+,peptidase_inhibitor_3	EFM19_BREAST	0.88	1	0.3246	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	3	58	MT-ND4	1062	chrM:10821:+	MT-ND4L	5516	chrM:10607:+	INCL_NON_REF_SPLICE	YES	6	3	0.91	0.95	0.0336	0.6491	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	0.91	0.95	0.6827	FALSE	344	821	44	306	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	7	41	MT-ND5	2792	chrM:14128:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0783	0.4588	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	1	1	0.5371	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	NCOR1--AP005135.2	15	9	NCOR1	45500	chr17:15964715:-	AP005135.2	64376	chr11:134931841:-	ONLY_REF_SPLICE	YES	29	0	0.45	1	0.1679	0.1007	NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1,AP005135.2->chr11:134931675-134945793:-	EFM19_BREAST	0.45	1	0.2686	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	7	36	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0783	0.4029	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	1	1	0.4812	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	MT-ATP6--MT-CO1	14	6	MT-ATP6	1153	chrM:8679:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	13856	15864	0	0	0.1567	0.0671	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFM19_BREAST	0	0	0.2238	FALSE	183	104	9	328	0	FALSE	ACH-000330
EFM19_BREAST	ZCCHC7--FAM219A	14	5	ZCCHC7	3765	chr9:37126939:+	FAM219A	23460	chr9:34405962:-	ONLY_REF_SPLICE	YES	54	7	0.26	0.73	0.1567	0.056	ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7,FAM219A->chr9:34398182-34458568:-,family_with_sequence_similarity_219_member_A	EFM19_BREAST	0.26	0.73	0.2127	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MT-ND6--MT-TE	14	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1567	0.0224	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM19_BREAST	0.94	1	0.1791	FALSE	499	1288	110	792	0	FALSE	ACH-000330
EFM19_BREAST	HSP90AB1--MT-RNR2	13	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3897	0	0	1	0.1455	0.0112	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFM19_BREAST	0	1	0.1567	FALSE	13	9	0	364	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	3	39	MT-ND4	1489	chrM:11248:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	YES	484	0	0.08	1	0.0336	0.4365	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	0.08	1	0.4701	FALSE	344	827	44	306	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	8	18	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4	557	0.87	0.04	0.0895	0.2014	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	0.04	0.87	0.2909	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	4	33	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	7	0	0.84	1	0.0448	0.3693	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	0.84	1	0.4141	FALSE	344	821	44	306	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	6	25	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	2488	0	0.01	1	0.0671	0.2798	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	0.01	1	0.3469	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	SLC30A9--ATP10D	9	13	SLC30A9	2454	chr4:42003797:+	ATP10D	28743	chr4:47514521:+	ONLY_REF_SPLICE	YES	98	2	0.18	0.92	0.1007	0.1455	SLC30A9->chr4:41992489-42092474:+,solute_carrier_family_30_member_9,ATP10D->ATPase_phospholipid_transporting_10D_(putative),chr4:47487305-47595503:+	EFM19_BREAST	0.18	0.92	0.2462	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	3	36	MT-ND4	1073	chrM:10832:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	7	0	0.85	1	0.0336	0.4029	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	0.85	1	0.4365	FALSE	344	821	44	306	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND1--MT-RNR2	3	35	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	15	0	0.72	1	0.0336	0.3917	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFM19_BREAST	0.72	1	0.4253	FALSE	114	26	4	85	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	3	35	MT-ND5	2846	chrM:14182:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0.3917	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	1	1	0.4253	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	6	23	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	6422	0	0	1	0.0671	0.2574	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	0	1	0.3245	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	7	18	MT-ND5	2518	chrM:13854:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	YES	3527	6	0.01	0.81	0.0783	0.2014	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	0.01	0.81	0.2797	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	THRAP3--HCG20	11	2	THRAP3	2048	chr1:36691064:+	HCG20	22389	chr6:30756468:+	ONLY_REF_SPLICE	YES	10	0	0.57	1	0.1231	0.0224	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,HCG20->HLA_complex_group_20_(non-protein_coding),chr6:30734602-30760027:+	EFM19_BREAST	0.57	1	0.1455	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MT-TA--MT-TC	10	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1119	0.056	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFM19_BREAST	1	1	0.1679	FALSE	462	80	0	856	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	5	24	MT-ND5	2879	chrM:14215:+	MT-ATP8	5913	chrM:8466:+	INCL_NON_REF_SPLICE	NO	0	7	1	0.81	0.056	0.2686	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	0.81	1	0.3246	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	4	28	MT-ND5	2592	chrM:13928:+	MT-ATP8	5878	chrM:8431:+	INCL_NON_REF_SPLICE	YES	3340	0	0.01	1	0.0448	0.3134	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	0.01	1	0.3582	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	HSP90AB1--MT-RNR2	10	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3915	0	0	1	0.1119	0.0224	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFM19_BREAST	0	1	0.1343	FALSE	13	9	0	364	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	3	29	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	25	0	0.56	1	0.0336	0.3245	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	0.56	1	0.3581	FALSE	344	826	44	306	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	4	21	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	22	0	0.53	1	0.0448	0.235	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	0.53	1	0.2798	FALSE	344	826	44	306	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	4	21	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	4804	0	0.01	1	0.0448	0.235	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	0.01	1	0.2798	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	4	19	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0448	0.2126	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	0.92	1	0.2574	FALSE	344	821	44	306	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND6--MT-TE	6	10	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0671	0.1119	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM19_BREAST	0.89	1	0.179	FALSE	499	1288	110	792	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND6--MT-ND5	8	1	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	2998	2244	0	0	0.0895	0.0112	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	EFM19_BREAST	0	0	0.1007	FALSE	101	855	57	72	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	3	20	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	2507	0	0.01	1	0.0336	0.2238	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	0.01	1	0.2574	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	3	18	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	23	0	0.48	1	0.0336	0.2014	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	0.48	1	0.235	FALSE	344	826	44	306	0	FALSE	ACH-000330
EFM19_BREAST	MT-ATP6--MT-CO1	4	13	MT-ATP6	1477	chrM:9003:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	NO	10510	15864	0	0	0.0448	0.1455	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFM19_BREAST	0	0	0.1903	FALSE	183	104	9	328	0	FALSE	ACH-000330
EFM19_BREAST	MT-ATP6--MT-CO1	4	13	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	NO	2385	15864	0.01	0	0.0448	0.1455	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFM19_BREAST	0	0.01	0.1903	FALSE	183	104	9	328	0	FALSE	ACH-000330
EFM19_BREAST	MT-ATP6--MT-CO1	7	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	11540	17393	0	0	0.0783	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFM19_BREAST	0	0	0.0895	FALSE	183	104	9	328	0	FALSE	ACH-000330
EFM19_BREAST	MT-ATP6--MT-CO1	7	1	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	NO	6733	16423	0	0	0.0783	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFM19_BREAST	0	0	0.0895	FALSE	183	104	9	328	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	5	9	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	51	0	0.22	1	0.056	0.1007	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	0.22	1	0.1567	FALSE	344	827	44	306	0	FALSE	ACH-000330
EFM19_BREAST	MT-ATP6--MT-CO1	6	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	NO	14505	17722	0	0	0.0671	0.0448	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFM19_BREAST	0	0	0.1119	FALSE	183	104	9	328	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	3	16	MT-ND5	2047	chrM:13383:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	5995	0	0	1	0.0336	0.1791	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	0	1	0.2127	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	4	12	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	3888	1145	0	0.01	0.0448	0.1343	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	0	0.01	0.1791	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND6--MT-TE	5	8	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.056	0.0895	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM19_BREAST	0.87	1	0.1455	FALSE	499	1288	110	792	0	FALSE	ACH-000330
EFM19_BREAST	MT-ATP6--MT-CO1	6	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11688	17722	0	0	0.0671	0.0224	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFM19_BREAST	0	0	0.0895	FALSE	183	104	9	328	0	FALSE	ACH-000330
EFM19_BREAST	WBP1L--ITPRIP	5	6	WBP1L	3446	chr10:104557852:+	ITPRIP	16066	chr10:106075822:-	ONLY_REF_SPLICE	YES	58	21	0.16	0.34	0.056	0.0671	WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+,ITPRIP->chr10:106071894-106098162:-,inositol_1,4,5-trisphosphate_receptor_interacting_protein	EFM19_BREAST	0.16	0.34	0.1231	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MT-ATP6--MT-CO1	4	9	MT-ATP6	1408	chrM:8934:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	15411	18089	0	0	0.0448	0.1007	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFM19_BREAST	0	0	0.1455	FALSE	183	104	9	328	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	4	9	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	25	0	0.34	1	0.0448	0.1007	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	0.34	1	0.1455	FALSE	344	826	44	306	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND6--MT-ND5	5	5	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	3923	1	0	0.056	0.056	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	EFM19_BREAST	0	1	0.112	FALSE	101	855	57	72	0	FALSE	ACH-000330
EFM19_BREAST	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0.0112	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFM19_BREAST	1	1	0.0783	FALSE	462	80	0	856	0	FALSE	ACH-000330
EFM19_BREAST	RP11-96H19.1--RP11-446N19.1	5	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.056	0.056	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EFM19_BREAST	1	1	0.112	FALSE	515	4851	409	746	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND6--MT-ND5	5	4	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	2259	1	0	0.056	0.0448	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	EFM19_BREAST	0	1	0.1008	FALSE	101	855	57	72	0	FALSE	ACH-000330
EFM19_BREAST	BCAS3--TG	5	3	BCAS3	37888	chr17:59161925:+	TG	60639	chr8:133880360:+	ONLY_REF_SPLICE	YES	22	0	0.27	1	0.056	0.0336	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,TG->chr8:133879203-134147147:+,thyroglobulin	EFM19_BREAST	0.27	1	0.0896	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MAP2K6--TNRC6C	4	7	MAP2K6	1303	chr17:67411141:+	TNRC6C	34104	chr17:76071217:+	ONLY_REF_SPLICE	YES	8	14	0.58	0.44	0.0448	0.0783	MAP2K6->chr17:67410839-67539472:+,mitogen-activated_protein_kinase_kinase_6,TNRC6C->chr17:76000249-76104916:+,trinucleotide_repeat_containing_6C	EFM19_BREAST	0.44	0.58	0.1231	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MT-ATP6--MT-CO1	5	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	11688	15682	0	0	0.056	0.0224	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFM19_BREAST	0	0	0.0784	FALSE	183	104	9	328	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	3	10	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	10	0	0.57	1	0.0336	0.1119	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	0.57	1	0.1455	FALSE	344	826	44	306	0	FALSE	ACH-000330
EFM19_BREAST	NRIP1--AF127936.7	5	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.056	0.0224	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	EFM19_BREAST	0.64	1	0.0784	FALSE	292	1546	117	613	0	FALSE	ACH-000330
EFM19_BREAST	RP11-680G10.1--GSE1	3	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	21	1	0.38	0.0336	0.1119	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	EFM19_BREAST	0.38	1	0.1455	TRUE	458	1351	185	561	0	FALSE	ACH-000330
EFM19_BREAST	SLX4IP--PI3	3	10	SLX4IP	1151	chr20:10416101:+	PI3	13907	chr20:43803482:+	INCL_NON_REF_SPLICE	YES	3	0	0.81	1	0.0336	0.1119	SLX4IP->SLX4_interacting_protein,chr20:10415951-10617477:+,PI3->chr20:43803517-43805185:+,peptidase_inhibitor_3	EFM19_BREAST	0.81	1	0.1455	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MT-ATP6--MT-CO1	3	9	MT-ATP6	1516	chrM:9042:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	7521	18089	0	0	0.0336	0.1007	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFM19_BREAST	0	0	0.1343	FALSE	183	104	9	328	0	FALSE	ACH-000330
EFM19_BREAST	MT-ATP6--MT-CO1	3	9	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4240	18089	0	0	0.0336	0.1007	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFM19_BREAST	0	0	0.1343	FALSE	183	104	9	328	0	FALSE	ACH-000330
EFM19_BREAST	CNBP--RPL18	5	0	CNBP	2683	chr3:128890079:-	RPL18	9135	chr19:49121094:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	CNBP->CCHC-type_zinc_finger_nucleic_acid_binding_protein,chr3:128888327-128902765:-,RPL18->chr19:49118585-49122793:-,ribosomal_protein_L18	EFM19_BREAST	1	1	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MT-ND4--MT-ND4L	5	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFM19_BREAST	1	1	0.056	FALSE	344	821	44	306	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND6--MT-TE	3	8	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	4	0	0.73	1	0.0336	0.0895	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM19_BREAST	0.73	1	0.1231	FALSE	499	1288	110	792	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM19_BREAST	1	1	0.056	FALSE	499	1288	110	792	0	FALSE	ACH-000330
EFM19_BREAST	MT-TA--MT-TC	3	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0.0895	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFM19_BREAST	1	1	0.1231	FALSE	462	80	0	856	0	FALSE	ACH-000330
EFM19_BREAST	MT-ATP6--MT-CO1	4	3	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	11883	17750	0	0	0.0448	0.0336	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFM19_BREAST	0	0	0.0784	FALSE	183	104	9	328	0	FALSE	ACH-000330
EFM19_BREAST	WDFY3--RP11-8L2.1	4	2	WDFY3	2277	chr4:85853423:-	RP11-8L2.1	92016	chr4:84933272:-	ONLY_REF_SPLICE	YES	2	2	0.75	0.75	0.0448	0.0224	WDFY3->WD_repeat_and_FYVE_domain_containing_3,chr4:85590704-85887544:-,RP11-8L2.1->chr4:84717589-85214565:-	EFM19_BREAST	0.75	0.75	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	3	5	MT-ND5	1899	chrM:13235:+	MT-ATP8	5944	chrM:8497:+	INCL_NON_REF_SPLICE	YES	5760	1357	0	0.01	0.0336	0.056	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	0	0.01	0.0896	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND6--MT-TE	3	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0336	0.056	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFM19_BREAST	0.89	1	0.0896	FALSE	499	1288	110	792	0	FALSE	ACH-000330
EFM19_BREAST	MT-TA--MT-TC	3	5	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0.056	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFM19_BREAST	1	1	0.0896	FALSE	462	80	0	856	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	3	4	MT-ND5	1735	chrM:13071:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4147	14	0	0.33	0.0336	0.0448	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	0	0.33	0.0784	FALSE	43	37	8	105	0	FALSE	ACH-000330
EFM19_BREAST	ZCCHC7--FAM219A	4	0	ZCCHC7	1085	chr9:37120620:+	FAM219A	23460	chr9:34405962:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0448	0	ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7,FAM219A->chr9:34398182-34458568:-,family_with_sequence_similarity_219_member_A	EFM19_BREAST	1	1	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MT-ND1--MT-RNR2	3	3	MT-ND1	1272	chrM:3578:+	MT-RNR2	5546	chrM:2260:+	INCL_NON_REF_SPLICE	YES	16	6618	0.27	0	0.0336	0.0336	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFM19_BREAST	0	0.27	0.0672	FALSE	120	26	5	87	0	FALSE	ACH-000330
EFM19_BREAST	NCOR1--AP005135.2	3	3	NCOR1	44796	chr17:15965419:-	AP005135.2	64376	chr11:134931841:-	ONLY_REF_SPLICE	YES	69	0	0.08	1	0.0336	0.0336	NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1,AP005135.2->chr11:134931675-134945793:-	EFM19_BREAST	0.08	1	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	MT-ND5--MT-ATP8	3	2	MT-ND5	1602	chrM:12938:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	5128	731	0	0.01	0.0336	0.0224	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFM19_BREAST	0	0.01	0.056	FALSE	42	36	7	104	0	FALSE	ACH-000330
EFM19_BREAST	SBNO2--C19orf26	3	2	SBNO2	1112	chr19:1174171:-	C19orf26	29371	chr19:1236120:-	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0336	0.0224	LOCAL_REARRANGEMENT:-:[54004],SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),C19orf26->chr19:1228286-1238026:-	EFM19_BREAST	0.26	1	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	SLX4IP--PI3	3	2	SLX4IP	2207	chr20:10438879:+	PI3	14927	chr20:43804502:+	ONLY_REF_SPLICE	YES	4	4	0.56	0.56	0.0336	0.0224	SLX4IP->SLX4_interacting_protein,chr20:10415951-10617477:+,PI3->chr20:43803517-43805185:+,peptidase_inhibitor_3	EFM19_BREAST	0.56	0.56	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	CCDC51--IGFBP5	3	1	CCDC51	1173	chr3:48481694:-	IGFBP5	10300	chr2:217559739:-	INCL_NON_REF_SPLICE	YES	0	1451	1	0	0.0336	0.0112	CCDC51->chr3:48473574-48481866:-,coiled-coil_domain_containing_51,IGFBP5->Oncogene{Bushman},chr2:217536828-217560248:-,insulin_like_growth_factor_binding_protein_5	EFM19_BREAST	0	1	0.0448	FALSE	0	0	0	1	0	FALSE	ACH-000330
EFM19_BREAST	MT-ATP6--MT-CO1	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11284	17722	0	0	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFM19_BREAST	0	0	0.0448	FALSE	183	104	9	328	0	FALSE	ACH-000330
EFM19_BREAST	MT-ND6--MT-ND5	3	1	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	NO	3	2238	0.57	0	0.0336	0.0112	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	EFM19_BREAST	0	0.57	0.0448	FALSE	101	855	57	72	0	FALSE	ACH-000330
EFM19_BREAST	NRIP1--AF127936.7	2	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	19	0	0.27	1	0.0224	0.056	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	EFM19_BREAST	0.27	1	0.0784	FALSE	125	705	46	456	0	FALSE	ACH-000330
EFM19_BREAST	PPME1--AP000769.1	2	5	PPME1	3142	chr11:73915490:+	AP000769.1	25333	chr11:65233556:+	ONLY_REF_SPLICE	YES	38	0	0.16	1	0.0224	0.056	PPME1->chr11:73882144-73965748:+,protein_phosphatase_methylesterase_1,AP000769.1->chr11:65222728-65234028:+	EFM19_BREAST	0.16	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	SBNO2--C19orf26	2	5	SBNO2	2810	chr19:1168693:-	C19orf26	29371	chr19:1236120:-	ONLY_REF_SPLICE	YES	66	0	0.1	1	0.0224	0.056	LOCAL_REARRANGEMENT:-:[54004],SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),C19orf26->chr19:1228286-1238026:-	EFM19_BREAST	0.1	1	0.0784	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	THRAP3--HCG20	3	1	THRAP3	1687	chr1:36690703:+	HCG20	22389	chr6:30756468:+	ONLY_REF_SPLICE	YES	8	0	0.33	1	0.0336	0.0112	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,HCG20->HLA_complex_group_20_(non-protein_coding),chr6:30734602-30760027:+	EFM19_BREAST	0.33	1	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	DSCR3--TTC3	3	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	EFM19_BREAST	1	1	0.0336	TRUE	0	9	0	44	1	FALSE	ACH-000330
EFM19_BREAST	KIRREL--ZFYVE9	3	0	KIRREL	1456	chr1:157963518:+	ZFYVE9	27607	chr1:52729445:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	{Klijn_CCL:Breast=1},KIRREL->chr1:157963063-158070052:+,kin_of_IRRE_like_(Drosophila),ZFYVE9->chr1:52608046-52812358:+,zinc_finger_FYVE-type_containing_9	EFM19_BREAST	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	LINC01036--LINC01037	3	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	EFM19_BREAST	1	1	0.0336	FALSE	0	24	0	62	0	FALSE	ACH-000330
EFM19_BREAST	AL163953.3--NID2	2	2	AL163953.3	5422	chr14:53784856:+	NID2	18260	chr14:52509649:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0224	0.0224	AL163953.3->chr14:53635772-54153976:+,NID2->chr14:52471521-52535712:-,nidogen_2	EFM19_BREAST	0.8	1	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	SLC29A4--WIPI2	2	2	SLC29A4	6621	chr7:5334565:+	WIPI2	34987	chr7:5270466:+	ONLY_REF_SPLICE	YES	0	188	1	0.02	0.0224	0.0224	LOCAL_REARRANGEMENT:+:[40543],SLC29A4->chr7:5314000-5346501:+,solute_carrier_family_29_member_4,WIPI2->WD_repeat_domain,_phosphoinositide_interacting_2,chr7:5229819-5273457:+	EFM19_BREAST	0.02	1	0.0448	TRUE	0	0	0	1	0	FALSE	ACH-000330
EFM19_BREAST	USP54--ZMIZ1	2	2	USP54	19400	chr10:75296027:-	ZMIZ1	44177	chr10:80961341:+	ONLY_REF_SPLICE	YES	59	484	0.06	0.01	0.0224	0.0224	USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54,ZMIZ1->Oncogene{Bushman},chr10:80828792-81076276:+,zinc_finger_MIZ-type_containing_1	EFM19_BREAST	0.01	0.06	0.0448	FALSE	0	0	0	1	0	FALSE	ACH-000330
EFM19_BREAST	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	145	1	0.02	0.0224	0.0112	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	EFM19_BREAST	0.02	1	0.0336	TRUE	64	13	3	59	0	FALSE	ACH-000330
EFM19_BREAST	ZCCHC7--FAM219A	1	5	ZCCHC7	5915	chr9:37147442:+	FAM219A	23460	chr9:34405962:-	ONLY_REF_SPLICE	YES	60	7	0.09	0.46	0.0112	0.056	ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7,FAM219A->chr9:34398182-34458568:-,family_with_sequence_similarity_219_member_A	EFM19_BREAST	0.09	0.46	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	ASUN--CSNK2B-LY6G5B-1181	2	0	ASUN	11100	chr12:27070577:-	CSNK2B-LY6G5B-1181	25545	chr6:31638750:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-,CSNK2B-LY6G5B-1181->chr6:31633879-31641323:+	EFM19_BREAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	CNN2--CIRBP	2	0	CNN2	4331	chr19:1032695:+	CIRBP	19636	chr19:1270927:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	CNN2->calponin_2,chr19:1026298-1039068:+,CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein	EFM19_BREAST	1	1	0.0224	TRUE	0	1	0	1	0	TRUE	ACH-000330
EFM19_BREAST	CSNK1G2--BTBD2	2	0	CSNK1G2	1230	chr19:1941417:+	BTBD2	22552	chr19:1997462:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	LOCAL_INVERSION:+:-:[4110],CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,BTBD2->BTB_domain_containing_2,chr19:1985447-2034880:-	EFM19_BREAST	1	1	0.0224	TRUE	0	0	0	3	0	TRUE	ACH-000330
EFM19_BREAST	DOCK5--MAPK10	2	0	DOCK5	58027	chr8:25266456:+	MAPK10	100958	chr4:86952584:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5,MAPK10->Oncogene{Bushman},chr4:86936276-87515284:-,mitogen-activated_protein_kinase_10	EFM19_BREAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	LINC01016--FAM156A	2	0	LINC01016	2450	chr6:33861356:-	FAM156A	17431	chrX:52985544:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	LINC01016->chr6:33835283-33864691:-,long_intergenic_non-protein_coding_RNA_1016,FAM156A->chrX:52976462-53024651:-,family_with_sequence_similarity_156_member_A	EFM19_BREAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	LINC01036--LINC01037	2	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	EFM19_BREAST	1	1	0.0224	FALSE	0	26	0	50	0	FALSE	ACH-000330
EFM19_BREAST	MTMR3--TSR1	2	0	MTMR3	3345	chr22:30367051:+	TSR1	40567	chr17:2232769:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,TSR1->TSR1,_ribosome_maturation_factor,chr17:2225797-2240801:-	EFM19_BREAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	RCC1--HAUS1	2	0	RCC1	2175	chr1:28834672:+	HAUS1	26812	chr18:43702433:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+	EFM19_BREAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	TAF9--ZCCHC7	2	0	TAF9	7559	chr5:68651476:-	ZCCHC7	14964	chr9:37126309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	TAF9->TATA-box_binding_protein_associated_factor_9,chr5:68646811-68665840:-,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	EFM19_BREAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	WBP1L--SCOC	2	0	WBP1L	3446	chr10:104557852:+	SCOC	17871	chr4:141300275:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+,SCOC->chr4:141178440-141306880:+,short_coiled-coil_protein	EFM19_BREAST	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	AIG1--FBXO30	1	1	AIG1	5562	chr6:143486320:+	FBXO30	20673	chr6:146127557:-	ONLY_REF_SPLICE	YES	75	33	0.03	0.06	0.0112	0.0112	AIG1->androgen-induced_1,chr6:143381633-143661441:+,FBXO30->F-box_protein_30,chr6:146114638-146135889:-	EFM19_BREAST	0.03	0.06	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000330
EFM19_BREAST	CA12--SRP9	1	1	CA12	3866	chr15:63667857:-	SRP9	22259	chr1:225965637:+	ONLY_REF_SPLICE	NO	389	72	0.01	0.03	0.0112	0.0112	CA12->carbonic_anhydrase_12,chr15:63613577-63674360:-,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	EFM19_BREAST	0.01	0.03	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000330
EFM19_BREAST	DCAF17--RP11-125B21.2	1	1	DCAF17	1970	chr2:172291696:+	RP11-125B21.2	42191	chr9:2425540:-	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0112	0.0112	DCAF17->DDB1_and_CUL4_associated_factor_17,chr2:172290727-172341562:+,RP11-125B21.2->chr9:2422702-2641395:-	EFM19_BREAST	0.25	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000330
EFM19_BREAST	FGFR2--COL14A1	1	1	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	220	1	0.01	0.67	0.0112	0.0112	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	EFM19_BREAST	0.01	0.67	0.0224	FALSE	0	0	0	32	0	FALSE	ACH-000330
EFM19_BREAST	NEURL--SH3PXD2A	1	1	NEURL	5082	chr10:105330870:+	SH3PXD2A	26931	chr10:105420872:-	ONLY_REF_SPLICE	NO	356	13	0.01	0.13	0.0112	0.0112	NEIGHBORS_OVERLAP:+:-:[4024],NEURL->chr10:105253736-105352309:+,SH3PXD2A->SH3_and_PX_domains_2A,chr10:105348285-105615301:-	EFM19_BREAST	0.01	0.13	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000330
EFM19_BREAST	PLEC--SHARPIN	1	1	PLEC	5758	chr8:145027894:-	SHARPIN	43357	chr8:145158128:-	ONLY_REF_SPLICE	YES	225	192	0.01	0.01	0.0112	0.0112	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:1=pct:0.3],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=3;pct=0.03%;dist=Small_Intestine_-_Terminal_Ileum=1,Cells_-_Transformed_fibroblasts=1,Brain_-_Amygdala=1},PLEC->chr8:144989321-145050902:-,plectin,SHARPIN->SHANK_associated_RH_domain_interactor,chr8:145153536-145163027:-	EFM19_BREAST	0.01	0.01	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000330
EFM19_BREAST	RNF114--OGFR-AS1	1	1	RNF114	2293	chr20:48558248:+	OGFR-AS1	12208	chr20:61433461:-	ONLY_REF_SPLICE	YES	409	0	0	1	0.0112	0.0112	RNF114->chr20:48552948-48570429:+,ring_finger_protein_114,OGFR-AS1->OGFR_antisense_RNA_1,chr20:61431979-61436939:-	EFM19_BREAST	0	1	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000330
EFM19_BREAST	STAU1--PREX1	1	1	STAU1	1252	chr20:47804653:-	PREX1	27830	chr20:47324959:-	ONLY_REF_SPLICE	YES	304	687	0.01	0	0.0112	0.0112	{Klijn_CCL:Cervix=1},STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1	EFM19_BREAST	0	0.01	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000330
EFM19_BREAST	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	1	1	0.67	0.0112	0.0112	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EFM19_BREAST	0.67	1	0.0224	TRUE	62	24	1	171	0	FALSE	ACH-000330
EFM19_BREAST	TMEM135--PICALM	1	1	TMEM135	1343	chr11:86749228:+	PICALM	27944	chr11:85742653:-	ONLY_REF_SPLICE	YES	70	152	0.03	0.01	0.0112	0.0112	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Nerve_-_Tibial=1},TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	EFM19_BREAST	0.01	0.03	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000330
EFM19_BREAST	WIPF2--MSL1	1	1	WIPF2	3370	chr17:38412774:+	MSL1	27228	chr17:38287790:+	ONLY_REF_SPLICE	YES	213	316	0.01	0.01	0.0112	0.0112	LOCAL_REARRANGEMENT:+:[82514],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,MSL1->chr17:38278551-38293042:+,male_specific_lethal_1_homolog	EFM19_BREAST	0.01	0.01	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000330
HCC78_LUNG	SLC34A2--ROS1	695	278	SLC34A2	4738	chr4:25665952:+	ROS1	53374	chr6:117650609:-	ONLY_REF_SPLICE	YES	185	0	0.84	1	7.7738	3.1095	Cosmic{samples=1216,mutations=12,papers=39},chimerdb_pubmed{Lung Cancer},{Klijn_CCL:Lung=1},SLC34A2->Oncogene{Bushman},chr4:25656923-25680370:+,solute_carrier_family_34_member_2,ROS1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},ROS_proto-oncogene_1,_receptor_tyrosine_kinase,chr6:117609463-117747018:-	HCC78_LUNG	0.84	1	10.8833	TRUE	0	0	0	2	0	TRUE	ACH-000562
HCC78_LUNG	TIMM23B--LINC00843	137	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.5324	0.2684	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC78_LUNG	0.99	1	1.8008	TRUE	508	994	45	981	0	FALSE	ACH-000562
HCC78_LUNG	TIMM23--RP11-464F9.1	75	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	218	8	0.26	0.9	0.8389	0.0112	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC78_LUNG	0.26	0.9	0.8501	TRUE	519	3926	326	965	0	FALSE	ACH-000562
HCC78_LUNG	SLC34A2--ROS1	43	21	SLC34A2	4738	chr4:25665952:+	ROS1	56592	chr6:117645578:-	ONLY_REF_SPLICE	YES	185	56	0.26	0.53	0.481	0.2349	Cosmic{samples=1216,mutations=12,papers=39},chimerdb_pubmed{Lung Cancer},{Klijn_CCL:Lung=1},SLC34A2->Oncogene{Bushman},chr4:25656923-25680370:+,solute_carrier_family_34_member_2,ROS1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},ROS_proto-oncogene_1,_receptor_tyrosine_kinase,chr6:117609463-117747018:-	HCC78_LUNG	0.26	0.53	0.7159	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	MT-TA--MT-TC	46	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5145	0.0447	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC78_LUNG	1	1	0.5592	FALSE	462	80	0	856	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ND4L	3	168	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	16	0	0.91	1	0.0336	1.8791	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC78_LUNG	0.91	1	1.9127	FALSE	344	826	44	306	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ND4L	3	167	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	11	1	0.94	0.99	0.0336	1.868	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC78_LUNG	0.94	0.99	1.9016	FALSE	344	826	44	306	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ND4L	13	119	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	1	0.98	0.99	0.1454	1.3311	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC78_LUNG	0.98	0.99	1.4765	FALSE	344	821	44	306	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ND4L	3	124	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	11	0	0.92	1	0.0336	1.387	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC78_LUNG	0.92	1	1.4206	FALSE	344	826	44	306	0	FALSE	ACH-000562
HCC78_LUNG	PPL--SEC14L5	29	11	PPL	10890	chr16:4945262:-	SEC14L5	28506	chr16:5037558:+	ONLY_REF_SPLICE	YES	32	0	0.56	1	0.3244	0.123	{Klijn_CCL:Lung=1,Liver=1},NEIGHBORS_OVERLAP:-:+:[2424],PPL->chr16:4932508-5010742:-,periplakin,SEC14L5->SEC14_like_lipid_binding_5,chr16:5008318-5069159:+	HCC78_LUNG	0.56	1	0.4474	FALSE	0	0	0	1	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ND4L	23	28	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	948	0	0.05	1	0.2573	0.3132	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC78_LUNG	0.05	1	0.5705	FALSE	344	827	44	306	0	FALSE	ACH-000562
HCC78_LUNG	ZNF654--HMGB2	28	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3132	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HCC78_LUNG	1	1	0.3132	TRUE	0	0	0	518	0	FALSE	ACH-000562
HCC78_LUNG	GMEB1--SNHG3	23	17	GMEB1	9055	chr1:29030841:+	SNHG3	21608	chr1:28834640:+	ONLY_REF_SPLICE	YES	7	27	0.85	0.6	0.2573	0.1902	GMEB1->chr1:28995244-29045865:+,glucocorticoid_modulatory_element_binding_protein_1,SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3	HCC78_LUNG	0.6	0.85	0.4475	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	MT-ND6--MT-TE	22	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2461	0.0447	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC78_LUNG	1	1	0.2908	FALSE	499	1288	110	792	0	FALSE	ACH-000562
HCC78_LUNG	SLC34A2--ROS1	12	39	SLC34A2	4738	chr4:25665952:+	ROS1	55401	chr6:117647577:-	ONLY_REF_SPLICE	YES	185	9	0.22	0.85	0.1342	0.4362	Cosmic{samples=1216,mutations=12,papers=39},chimerdb_pubmed{Lung Cancer},{Klijn_CCL:Lung=1},SLC34A2->Oncogene{Bushman},chr4:25656923-25680370:+,solute_carrier_family_34_member_2,ROS1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},ROS_proto-oncogene_1,_receptor_tyrosine_kinase,chr6:117609463-117747018:-	HCC78_LUNG	0.22	0.85	0.5704	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO2	20	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	50	4	0.32	0.85	0.2237	0.0336	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC78_LUNG	0.32	0.85	0.2573	FALSE	59	21	0	114	0	FALSE	ACH-000562
HCC78_LUNG	OR51S1--TP53I11	20	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2237	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HCC78_LUNG	1	1	0.2237	TRUE	402	216	10	229	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND6--MT-TE	14	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1566	0.1454	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC78_LUNG	1	1	0.302	FALSE	499	1288	110	792	0	FALSE	ACH-000562
HCC78_LUNG	C15orf57--CBX3	14	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	43	30	0.35	0.43	0.1566	0.1007	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC78_LUNG	0.35	0.43	0.2573	TRUE	267	562	48	632	0	FALSE	ACH-000562
HCC78_LUNG	PEX3--AIG1	15	4	PEX3	2441	chr6:143780353:+	AIG1	26781	chr6:143654419:+	ONLY_REF_SPLICE	YES	32	95	0.37	0.17	0.1678	0.0447	PEX3->chr6:143771944-143811147:+,peroxisomal_biogenesis_factor_3,AIG1->androgen-induced_1,chr6:143381633-143661441:+	HCC78_LUNG	0.17	0.37	0.2125	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	MT-ND6--MT-TE	14	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1566	0.0447	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC78_LUNG	1	1	0.2013	FALSE	499	1288	110	792	0	FALSE	ACH-000562
HCC78_LUNG	NIPA1--UBE3A	14	4	NIPA1	4187	chr15:23086234:-	UBE3A	30329	chr15:25605674:-	ONLY_REF_SPLICE	YES	15	51	0.55	0.26	0.1566	0.0447	NIPA1->chr15:23043277-23100005:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_1,UBE3A->Oncogene{Bushman},chr15:25582381-25684128:-,ubiquitin_protein_ligase_E3A	HCC78_LUNG	0.26	0.55	0.2013	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ND4L	7	27	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	30	0	0.53	1	0.0783	0.302	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC78_LUNG	0.53	1	0.3803	FALSE	344	826	44	306	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ND4L	6	28	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	536	0	0.06	1	0.0671	0.3132	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC78_LUNG	0.06	1	0.3803	FALSE	344	827	44	306	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ATP8	12	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1342	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC78_LUNG	1	1	0.1342	FALSE	230	198	14	283	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ATP8	12	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1342	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC78_LUNG	1	1	0.1342	FALSE	231	205	14	283	0	FALSE	ACH-000562
HCC78_LUNG	MT-CO3--MT-ATP6	3	32	MT-CO3	1155	chrM:9361:+	MT-ATP6	5330	chrM:9072:+	INCL_NON_REF_SPLICE	YES	6	1	0.85	0.97	0.0336	0.3579	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC78_LUNG	0.85	0.97	0.3915	FALSE	189	492	56	216	0	FALSE	ACH-000562
HCC78_LUNG	REV3L--RPL28	10	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1119	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	HCC78_LUNG	1	1	0.1119	TRUE	22	156	2	142	0	FALSE	ACH-000562
HCC78_LUNG	CUL4B--TMEM255A	8	3	CUL4B	13099	chrX:119676821:-	TMEM255A	33313	chrX:119427906:-	ONLY_REF_SPLICE	YES	44	0	0.2	1	0.0895	0.0336	CUL4B->Oncogene{Bushman},chrX:119658464-119709649:-,cullin_4B,TMEM255A->chrX:119392505-119445411:-,transmembrane_protein_255A	HCC78_LUNG	0.2	1	0.1231	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	MT-CO3--MT-ATP6	8	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	6	0	0.6	1	0.0895	0.0112	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC78_LUNG	0.6	1	0.1007	FALSE	189	492	56	216	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ATP8	8	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0895	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC78_LUNG	1	1	0.0895	FALSE	230	193	14	283	0	FALSE	ACH-000562
HCC78_LUNG	MT-TA--MT-TC	7	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0783	0.0447	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC78_LUNG	1	1	0.123	FALSE	462	80	0	856	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO2	6	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	50	1	0.15	0.9	0.0671	0.0336	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC78_LUNG	0.15	0.9	0.1007	FALSE	59	21	0	114	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO2	6	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	50	2	0.15	0.82	0.0671	0.0336	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC78_LUNG	0.15	0.82	0.1007	FALSE	59	21	0	114	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO2	6	2	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	47	1	0.15	0.89	0.0671	0.0224	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC78_LUNG	0.15	0.89	0.0895	FALSE	59	21	0	114	0	FALSE	ACH-000562
HCC78_LUNG	RP11-96H19.1--RP11-446N19.1	5	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0559	0.0559	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC78_LUNG	1	1	0.1118	FALSE	515	4851	409	746	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC78_LUNG	1	1	0.0671	FALSE	499	1288	110	792	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ND4L	3	10	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	27	0	0.33	1	0.0336	0.1119	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC78_LUNG	0.33	1	0.1455	FALSE	344	826	44	306	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND6--MT-TE	4	4	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0.0447	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC78_LUNG	1	1	0.0894	FALSE	499	1288	110	792	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0559	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC78_LUNG	1	1	0.0559	FALSE	499	1288	110	792	0	FALSE	ACH-000562
HCC78_LUNG	NIPA1--UBE3A	4	4	NIPA1	4187	chr15:23086234:-	UBE3A	30333	chr15:25605670:-	INCL_NON_REF_SPLICE	YES	15	50	0.35	0.14	0.0447	0.0447	NIPA1->chr15:23043277-23100005:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_1,UBE3A->Oncogene{Bushman},chr15:25582381-25684128:-,ubiquitin_protein_ligase_E3A	HCC78_LUNG	0.14	0.35	0.0894	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO2	3	7	MT-ATP6	1575	chrM:9101:+	MT-CO2	4747	chrM:7651:+	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0336	0.0783	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC78_LUNG	0.83	1	0.1119	FALSE	59	21	0	114	0	FALSE	ACH-000562
HCC78_LUNG	SLC34A2--ROS1	1	15	SLC34A2	4738	chr4:25665952:+	ROS1	57676	chr6:117642557:-	ONLY_REF_SPLICE	YES	185	85	0.08	0.16	0.0112	0.1678	Cosmic{samples=1216,mutations=12,papers=39},chimerdb_pubmed{Lung Cancer},{Klijn_CCL:Lung=1},SLC34A2->Oncogene{Bushman},chr4:25656923-25680370:+,solute_carrier_family_34_member_2,ROS1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},ROS_proto-oncogene_1,_receptor_tyrosine_kinase,chr6:117609463-117747018:-	HCC78_LUNG	0.08	0.16	0.179	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	MT-CO3--MT-ATP6	4	1	MT-CO3	1149	chrM:9355:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	6	0	0.45	1	0.0447	0.0112	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC78_LUNG	0.45	1	0.0559	FALSE	189	492	56	216	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ATP8	4	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14316	53	0	0.09	0.0447	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC78_LUNG	0	0.09	0.0559	FALSE	231	217	16	283	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ATP8	4	1	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16791	53	0	0.09	0.0447	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC78_LUNG	0	0.09	0.0559	FALSE	231	217	16	283	0	FALSE	ACH-000562
HCC78_LUNG	BRI3BP--UBC	4	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	HCC78_LUNG	1	1	0.0447	TRUE	5	99	5	34	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC78_LUNG	1	1	0.0447	FALSE	183	104	9	328	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC78_LUNG	1	1	0.0447	FALSE	183	104	9	328	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO2	4	0	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC78_LUNG	1	1	0.0447	FALSE	59	21	0	114	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC78_LUNG	1	1	0.0447	FALSE	230	198	14	283	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC78_LUNG	1	1	0.0447	FALSE	231	204	14	283	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC78_LUNG	1	1	0.0447	FALSE	344	821	44	306	0	FALSE	ACH-000562
HCC78_LUNG	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC78_LUNG	1	1	0.0447	FALSE	462	80	0	856	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO2	3	3	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	51	1	0.11	0.86	0.0336	0.0336	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC78_LUNG	0.11	0.86	0.0672	FALSE	59	21	0	114	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO2	3	3	MT-ATP6	1572	chrM:9098:+	MT-CO2	4969	chrM:7873:+	INCL_NON_REF_SPLICE	YES	2	8	0.75	0.43	0.0336	0.0336	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC78_LUNG	0.43	0.75	0.0672	FALSE	59	21	0	114	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	15558	0	0	1	0.0336	0.0224	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC78_LUNG	0	1	0.056	FALSE	231	217	16	283	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	14635	834	0	0.01	0.0336	0.0224	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC78_LUNG	0	0.01	0.056	FALSE	231	217	16	283	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	15461	0	0	1	0.0336	0.0224	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC78_LUNG	0	1	0.056	FALSE	231	217	16	283	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	14151	0	0	1	0.0336	0.0224	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC78_LUNG	0	1	0.056	FALSE	231	217	16	283	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	14779	0	0	1	0.0336	0.0224	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC78_LUNG	0	1	0.056	FALSE	231	217	16	283	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	15691	0	0	1	0.0336	0.0224	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC78_LUNG	0	1	0.056	FALSE	231	217	16	283	0	FALSE	ACH-000562
HCC78_LUNG	ATG16L2--C11orf80	3	1	ATG16L2	14692	chr11:72539553:+	C11orf80	35020	chr11:66589114:+	ONLY_REF_SPLICE	YES	17	118	0.19	0.03	0.0336	0.0112	ATG16L2->autophagy_related_16_like_2,chr11:72525353-72554719:+,C11orf80->chr11:66511922-66610987:+,chromosome_11_open_reading_frame_80	HCC78_LUNG	0.03	0.19	0.0448	TRUE	0	0	0	1	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	8536	19541	0	0	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC78_LUNG	0	0	0.0448	FALSE	183	104	9	328	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	8985	19271	0	0	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC78_LUNG	0	0	0.0448	FALSE	183	104	9	328	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1159	chrM:8685:+	MT-CO1	5175	chrM:6397:+	INCL_NON_REF_SPLICE	YES	11074	19271	0	0	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC78_LUNG	0	0	0.0448	FALSE	183	104	9	328	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1132	chrM:8658:+	MT-CO1	5255	chrM:6477:+	INCL_NON_REF_SPLICE	YES	9290	18740	0	0	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC78_LUNG	0	0	0.0448	FALSE	183	104	9	328	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1538	chrM:11297:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17643	6	0	0.4	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC78_LUNG	0	0.4	0.0448	FALSE	231	217	16	283	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	14667	6	0	0.4	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC78_LUNG	0	0.4	0.0448	FALSE	231	217	16	283	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ND4L	3	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0336	0.0112	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC78_LUNG	0.67	1	0.0448	FALSE	344	821	44	306	0	FALSE	ACH-000562
HCC78_LUNG	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0.0559	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC78_LUNG	1	1	0.0783	FALSE	275	511	55	178	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC78_LUNG	1	1	0.0336	FALSE	183	104	9	328	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC78_LUNG	1	1	0.0336	FALSE	183	104	9	328	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO2	3	0	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC78_LUNG	1	1	0.0336	FALSE	59	21	0	114	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO2	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC78_LUNG	1	1	0.0336	FALSE	59	21	0	114	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO2	3	0	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC78_LUNG	1	1	0.0336	FALSE	59	21	0	114	0	FALSE	ACH-000562
HCC78_LUNG	MT-ATP6--MT-CO2	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO2	4811	chrM:7715:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC78_LUNG	1	1	0.0336	FALSE	59	21	0	114	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC78_LUNG	1	1	0.0336	FALSE	344	821	44	306	0	FALSE	ACH-000562
HCC78_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC78_LUNG	1	1	0.0336	FALSE	499	1288	110	792	0	FALSE	ACH-000562
HCC78_LUNG	PPP1R12C--CNN2	3	0	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	HCC78_LUNG	1	1	0.0336	TRUE	35	34	3	30	0	FALSE	ACH-000562
HCC78_LUNG	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0112	0.0559	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC78_LUNG	1	1	0.0671	FALSE	467	2173	244	435	0	FALSE	ACH-000562
HCC78_LUNG	C15orf38--UPF3A	2	0	C15orf38	5882	chr15:90446448:-	UPF3A	17446	chr13:115064315:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	C15orf38->chr15:90443159-90456188:-,UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+	HCC78_LUNG	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	CENPK--MORC2	2	0	CENPK	2471	chr5:64857290:-	MORC2	22519	chr22:31354680:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	CENPK->centromere_protein_K,chr5:64813593-64858998:-,MORC2->MORC_family_CW-type_zinc_finger_2,chr22:31321117-31364284:-	HCC78_LUNG	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	HDAC1--LCK	2	0	HDAC1	3583	chr1:32782383:+	LCK	16311	chr1:32739926:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	LOCAL_REARRANGEMENT:+:[5921],HDAC1->chr1:32757687-32799236:+,histone_deacetylase_1,LCK->LCK_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr1:32716840-32751766:+	HCC78_LUNG	1	1	0.0224	TRUE	0	1	0	1	1	TRUE	ACH-000562
HCC78_LUNG	HNF1B--DUSP14	2	0	HNF1B	1706	chr17:36104532:-	DUSP14	21051	chr17:35870779:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	HNF1B->HNF1_homeobox_B,chr17:36046435-36105237:-,DUSP14->chr17:35849937-35873603:+,dual_specificity_phosphatase_14	HCC78_LUNG	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	SLC34A2--ROS1	2	0	SLC34A2	4738	chr4:25665952:+	ROS1	66421	chr6:117609965:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	Cosmic{samples=1216,mutations=12,papers=39},chimerdb_pubmed{Lung Cancer},{Klijn_CCL:Lung=1},SLC34A2->Oncogene{Bushman},chr4:25656923-25680370:+,solute_carrier_family_34_member_2,ROS1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},ROS_proto-oncogene_1,_receptor_tyrosine_kinase,chr6:117609463-117747018:-	HCC78_LUNG	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000562
HCC78_LUNG	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC78_LUNG	1	1	0.0224	TRUE	62	24	1	171	0	FALSE	ACH-000562
HCC78_LUNG	NFIB--TRMT10C	1	1	NFIB	10292	chr9:14179726:-	TRMT10C	30992	chr3:101283614:+	ONLY_REF_SPLICE	NO	19	143	0.1	0.01	0.0112	0.0112	NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B,TRMT10C->chr3:101280706-101285290:+,tRNA_methyltransferase_10C,_mitochondrial_RNase_P_subunit	HCC78_LUNG	0.01	0.1	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000562
HCC78_LUNG	RNF126--BSG	1	1	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	139	940	0.01	0	0.0112	0.0112	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	HCC78_LUNG	0	0.01	0.0224	FALSE	0	2	0	12	0	FALSE	ACH-000562
HCC78_LUNG	RP13-188A5.1--KLF8	1	1	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	1	7	0.67	0.22	0.0112	0.0112	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	HCC78_LUNG	0.22	0.67	0.0224	TRUE	10	78	6	20	0	FALSE	ACH-000562
TT_THYROID	BSDC1--FAF1	446	4	BSDC1	1652	chr1:32859681:-	FAF1	37947	chr1:50957473:-	ONLY_REF_SPLICE	YES	3	2	0.99	1	5.096	0.0457	BSDC1->BSD_domain_containing_1,chr1:32830704-32860332:-,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	TT_THYROID	0.99	1	5.1417	TRUE	0	0	0	2	0	TRUE	ACH-001321
TT_THYROID	TIMM23B--PARGP1	52	14	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.5942	0.16	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	TT_THYROID	1	1	0.7542	TRUE	393	2105	140	19	0	FALSE	ACH-001321
TT_THYROID	RP4-565E6.1--HYDIN	36	9	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.98	0.4113	0.1028	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	TT_THYROID	0.98	1	0.5141	TRUE	456	1387	91	133	0	FALSE	ACH-001321
TT_THYROID	MT-ND4--MT-ND4L	19	64	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	2890	0	0.03	1	0.2171	0.7313	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_THYROID	0.03	1	0.9484	FALSE	344	827	44	306	0	FALSE	ACH-001321
TT_THYROID	MT-TA--MT-TC	28	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3199	0.0686	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TT_THYROID	1	1	0.3885	FALSE	462	80	0	856	0	FALSE	ACH-001321
TT_THYROID	AP003900.6--AC008132.1	29	0	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3314	0	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	TT_THYROID	1	1	0.3314	TRUE	0	0	0	25	0	FALSE	ACH-001321
TT_THYROID	TIMM23--RP11-464F9.1	27	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	158	2	0.15	0.93	0.3085	0.0114	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TT_THYROID	0.15	0.93	0.3199	TRUE	519	3926	326	965	0	FALSE	ACH-001321
TT_THYROID	AP003900.6--AC008132.1	24	11	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	11	0	0.76	1	0.2742	0.1257	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	TT_THYROID	0.76	1	0.3999	TRUE	1	1	0	28	1	FALSE	ACH-001321
TT_THYROID	MT-ND4--MT-ND4L	4	90	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	NO	18	0	0.84	1	0.0457	1.0283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_THYROID	0.84	1	1.074	FALSE	344	827	44	306	0	FALSE	ACH-001321
TT_THYROID	MT-ND4--MT-ND4L	3	54	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.0343	0.617	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_THYROID	0.95	1	0.6513	FALSE	344	821	44	306	0	FALSE	ACH-001321
TT_THYROID	CASC9--RP11-300E4.2	14	6	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	19	0	0.51	1	0.16	0.0686	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	TT_THYROID	0.51	1	0.2286	TRUE	0	23	0	19	23	TRUE	ACH-001321
TT_THYROID	CCDC91--RAD51AP1	14	3	CCDC91	25881	chr12:28637098:+	RAD51AP1	35989	chr12:4651050:+	ONLY_REF_SPLICE	YES	17	12	0.5	0.59	0.16	0.0343	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,RAD51AP1->RAD51_associated_protein_1,chr12:4647950-4669214:+	TT_THYROID	0.5	0.59	0.1943	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	PSAP--CALCA	12	3	PSAP	12909	chr10:73576612:-	CALCA	16477	chr11:14993890:-	INCL_NON_REF_SPLICE	NO	552	0	0.03	1	0.1371	0.0343	HGNC_GENEFAM,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,CALCA->Oncogene{Bushman},calcitonin_related_polypeptide_alpha,chr11:14988214-14993900:-	TT_THYROID	0.03	1	0.1714	TRUE	0	0	0	1	0	FALSE	ACH-001321
TT_THYROID	MT-ND4--MT-ND4L	5	28	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	5786	0	0.01	1	0.0571	0.3199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_THYROID	0.01	1	0.377	FALSE	328	800	43	304	0	FALSE	ACH-001321
TT_THYROID	MT-ND6--MT-TE	11	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.79	1	0.1257	0.0457	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TT_THYROID	0.79	1	0.1714	FALSE	499	1288	110	792	0	FALSE	ACH-001321
TT_THYROID	MT-ND6--MT-TE	11	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.1257	0.0114	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TT_THYROID	0.92	1	0.1371	FALSE	499	1288	110	792	0	FALSE	ACH-001321
TT_THYROID	C15orf57--CBX3	10	1	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	15	11	0.42	0.5	0.1143	0.0114	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TT_THYROID	0.42	0.5	0.1257	TRUE	267	562	48	632	0	FALSE	ACH-001321
TT_THYROID	RP11-680G10.1--GSE1	10	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	68	1	0.14	0.1143	0.0114	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TT_THYROID	0.14	1	0.1257	TRUE	465	1949	224	605	0	FALSE	ACH-001321
TT_THYROID	MT-ND4--MT-ND4L	3	26	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0343	0.2971	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_THYROID	0.91	1	0.3314	FALSE	344	821	44	306	0	FALSE	ACH-001321
TT_THYROID	MT-ND4--MT-ND4L	4	21	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2727	0	0.01	1	0.0457	0.2399	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_THYROID	0.01	1	0.2856	FALSE	344	827	44	306	0	FALSE	ACH-001321
TT_THYROID	RP11-123O10.4--GRIP1	9	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1028	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TT_THYROID	1	1	0.1028	FALSE	416	2512	207	587	0	FALSE	ACH-001321
TT_THYROID	MT-ATP6--MT-CO2	8	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	32	1	0.26	0.92	0.0914	0.0343	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TT_THYROID	0.26	0.92	0.1257	FALSE	59	21	0	114	0	FALSE	ACH-001321
TT_THYROID	MT-ND4--MT-ND4L	3	21	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6527	0	0	1	0.0343	0.2399	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_THYROID	0	1	0.2742	FALSE	343	822	44	305	0	FALSE	ACH-001321
TT_THYROID	MT-ND4--MT-ND4L	3	21	MT-ND4	1843	chrM:11602:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	4498	0	0.01	1	0.0343	0.2399	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_THYROID	0.01	1	0.2742	FALSE	344	827	44	306	0	FALSE	ACH-001321
TT_THYROID	RP11-444D3.1--SOX5	7	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	2	1	0.83	0.08	0.0343	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	TT_THYROID	0.83	1	0.1143	TRUE	477	1352	189	275	0	FALSE	ACH-001321
TT_THYROID	MT-TA--MT-TC	6	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0.0686	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TT_THYROID	1	1	0.1372	FALSE	462	80	0	856	0	FALSE	ACH-001321
TT_THYROID	MT-ND6--MT-TE	7	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.08	0.0114	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TT_THYROID	0.89	1	0.0914	FALSE	499	1288	110	792	0	FALSE	ACH-001321
TT_THYROID	LINC01014--KCNMB2	6	3	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	0	17	1	0.35	0.0686	0.0343	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	TT_THYROID	0.35	1	0.1029	FALSE	12	33	18	33	0	FALSE	ACH-001321
TT_THYROID	MT-ATP6--MT-CO2	6	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	32	1	0.22	0.9	0.0686	0.0343	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TT_THYROID	0.22	0.9	0.1029	FALSE	59	21	0	114	0	FALSE	ACH-001321
TT_THYROID	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TT_THYROID	1	1	0.0686	FALSE	183	104	9	328	0	FALSE	ACH-001321
TT_THYROID	MT-ATP6--MT-CO1	6	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TT_THYROID	1	1	0.0686	FALSE	183	104	9	328	0	FALSE	ACH-001321
TT_THYROID	MT-ATP6--MT-ND2	6	0	MT-ATP6	1158	chrM:8684:+	MT-ND2	5581	chrM:5369:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TT_THYROID	1	1	0.0686	FALSE	177	96	13	17	0	FALSE	ACH-001321
TT_THYROID	LINC01014--KCNMB2	5	2	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	0	20	1	0.26	0.0571	0.0229	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	TT_THYROID	0.26	1	0.08	FALSE	11	60	26	37	0	FALSE	ACH-001321
TT_THYROID	MT-ND6--MT-TE	4	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0457	0.0571	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TT_THYROID	0.9	1	0.1028	FALSE	499	1288	110	792	0	FALSE	ACH-001321
TT_THYROID	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0571	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TT_THYROID	1	1	0.0571	FALSE	462	80	0	856	0	FALSE	ACH-001321
TT_THYROID	MT-ATP6--MT-CO1	4	3	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	6011	9677	0	0	0.0457	0.0343	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TT_THYROID	0	0	0.08	FALSE	183	104	9	328	0	FALSE	ACH-001321
TT_THYROID	MT-ATP6--MT-CO2	4	3	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	34	1	0.17	0.88	0.0457	0.0343	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TT_THYROID	0.17	0.88	0.08	FALSE	59	21	0	114	0	FALSE	ACH-001321
TT_THYROID	CASC9--RP11-300E4.2	4	2	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	14	0	0.3	1	0.0457	0.0229	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	TT_THYROID	0.3	1	0.0686	TRUE	0	12	0	10	12	TRUE	ACH-001321
TT_THYROID	MT-ATP6--MT-CO2	4	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	28	1	0.18	0.86	0.0457	0.0229	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TT_THYROID	0.18	0.86	0.0686	FALSE	59	21	0	114	0	FALSE	ACH-001321
TT_THYROID	MT-ATP6--MT-ND2	4	2	MT-ATP6	1158	chrM:8684:+	MT-ND2	5092	chrM:4880:+	INCL_NON_REF_SPLICE	YES	6069	5494	0	0	0.0457	0.0229	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TT_THYROID	0	0	0.0686	FALSE	177	96	13	17	0	FALSE	ACH-001321
TT_THYROID	MT-TA--MT-TC	3	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0.0686	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TT_THYROID	1	1	0.1029	FALSE	462	80	0	856	0	FALSE	ACH-001321
TT_THYROID	RNF152--RP11-879F14.1	4	2	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	12	0	0.33	1	0.0457	0.0229	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	TT_THYROID	0.33	1	0.0686	FALSE	275	472	65	43	0	FALSE	ACH-001321
TT_THYROID	SETBP1--CXADRP3	4	2	SETBP1	5740	chr18:42449248:+	CXADRP3	24341	chr18:14490579:-	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0457	0.0229	SETBP1->Oncogene{Bushman},SET_binding_protein_1,chr18:42260138-42648475:+,CXADRP3->chr18:14477954-14499277:-,coxsackie_virus_and_adenovirus_receptor_pseudogene_3	TT_THYROID	0.55	1	0.0686	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	MT-ATP6--MT-CO2	3	5	MT-ATP6	1223	chrM:8749:+	MT-CO2	4767	chrM:7671:+	INCL_NON_REF_SPLICE	YES	39	0	0.17	1	0.0343	0.0571	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TT_THYROID	0.17	1	0.0914	FALSE	59	21	0	114	0	FALSE	ACH-001321
TT_THYROID	NAV2--OPCML-IT1	4	1	NAV2	3983	chr11:19799063:+	OPCML-IT1	61570	chr11:133231888:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0457	0.0114	NAV2->chr11:19372271-20143144:+,neuron_navigator_2,OPCML-IT1->OPCML_intronic_transcript_1,chr11:133229924-133235975:-	TT_THYROID	0.83	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	NAV2--OPCML-IT1	4	1	NAV2	3983	chr11:19799063:+	OPCML-IT1	61371	chr11:133232087:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0457	0.0114	NAV2->chr11:19372271-20143144:+,neuron_navigator_2,OPCML-IT1->OPCML_intronic_transcript_1,chr11:133229924-133235975:-	TT_THYROID	0.83	1	0.0571	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0.0571	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TT_THYROID	1	1	0.0914	FALSE	407	2205	196	549	0	FALSE	ACH-001321
TT_THYROID	AP003900.6--AC008132.1	4	0	AP003900.6	1122	chr21:11169841:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0457	0	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	TT_THYROID	1	1	0.0457	TRUE	0	0	0	25	0	FALSE	ACH-001321
TT_THYROID	MT-ATP6--MT-ND2	4	0	MT-ATP6	1082	chrM:8608:+	MT-ND2	5507	chrM:5295:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TT_THYROID	1	1	0.0457	FALSE	177	96	13	17	0	FALSE	ACH-001321
TT_THYROID	MT-ATP6--MT-ND2	4	0	MT-ATP6	1130	chrM:8656:+	MT-ND2	5517	chrM:5305:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TT_THYROID	1	1	0.0457	FALSE	177	96	13	17	0	FALSE	ACH-001321
TT_THYROID	MT-ATP6--MT-CO1	3	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	5813	9615	0	0	0.0343	0.0229	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TT_THYROID	0	0	0.0572	FALSE	183	104	9	328	0	FALSE	ACH-001321
TT_THYROID	MT-ATP6--MT-CO2	3	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	13	1	0.28	0.83	0.0343	0.0229	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TT_THYROID	0.28	0.83	0.0572	FALSE	59	21	0	114	0	FALSE	ACH-001321
TT_THYROID	MT-ATP6--MT-ND2	3	2	MT-ATP6	1170	chrM:8696:+	MT-ND2	5278	chrM:5066:+	INCL_NON_REF_SPLICE	YES	6072	4493	0	0	0.0343	0.0229	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TT_THYROID	0	0	0.0572	FALSE	177	96	13	17	0	FALSE	ACH-001321
TT_THYROID	MT-ATP6--MT-ND2	3	2	MT-ATP6	1140	chrM:8666:+	MT-ND2	5077	chrM:4865:+	INCL_NON_REF_SPLICE	YES	5659	5687	0	0	0.0343	0.0229	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TT_THYROID	0	0	0.0572	FALSE	177	96	13	17	0	FALSE	ACH-001321
TT_THYROID	MT-ATP6--MT-ND2	3	2	MT-ATP6	1140	chrM:8666:+	MT-ND2	5395	chrM:5183:+	INCL_NON_REF_SPLICE	YES	5659	3733	0	0	0.0343	0.0229	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TT_THYROID	0	0	0.0572	FALSE	177	96	13	17	0	FALSE	ACH-001321
TT_THYROID	MT-ATP6--MT-ND2	3	2	MT-ATP6	1187	chrM:8713:+	MT-ND2	5274	chrM:5062:+	INCL_NON_REF_SPLICE	YES	6538	4555	0	0	0.0343	0.0229	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TT_THYROID	0	0	0.0572	FALSE	177	96	13	17	0	FALSE	ACH-001321
TT_THYROID	MT-ATP6--MT-ND2	3	2	MT-ATP6	1544	chrM:9070:+	MT-ND2	5280	chrM:5068:+	INCL_NON_REF_SPLICE	YES	2079	4495	0	0	0.0343	0.0229	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TT_THYROID	0	0	0.0572	FALSE	177	96	13	17	0	FALSE	ACH-001321
TT_THYROID	MT-ND4--MT-ND4L	3	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0.0114	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_THYROID	1	1	0.0457	FALSE	344	821	44	306	0	FALSE	ACH-001321
TT_THYROID	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.44	0.0343	0.0114	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TT_THYROID	0.44	1	0.0457	TRUE	458	1351	185	561	0	FALSE	ACH-001321
TT_THYROID	AATK--PDXP	3	0	AATK	16514	chr17:79091734:-	PDXP	23563	chr22:38062697:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	AATK->apoptosis-associated_tyrosine_kinase,chr17:79091095-79139877:-,PDXP->chr22:38054734-38062941:+,pyridoxal_phosphatase	TT_THYROID	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	MMP16--MSRA	3	0	MMP16	5679	chr8:89179898:-	MSRA	34510	chr8:10159044:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	MMP16->chr8:89044237-89340254:-,matrix_metallopeptidase_16,MSRA->chr8:9911778-10286401:+,methionine_sulfoxide_reductase_A	TT_THYROID	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	MT-ATP6--MT-ND2	3	0	MT-ATP6	1127	chrM:8653:+	MT-ND2	5145	chrM:4933:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TT_THYROID	1	1	0.0343	FALSE	177	96	13	17	0	FALSE	ACH-001321
TT_THYROID	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TT_THYROID	1	1	0.0343	FALSE	344	821	44	306	0	FALSE	ACH-001321
TT_THYROID	PSAP--CALCA	3	0	PSAP	12449	chr10:73577072:-	CALCA	19962	chr11:14990355:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	HGNC_GENEFAM,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,CALCA->Oncogene{Bushman},calcitonin_related_polypeptide_alpha,chr11:14988214-14993900:-	TT_THYROID	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0.0457	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TT_THYROID	1	1	0.0686	FALSE	467	2173	244	435	0	FALSE	ACH-001321
TT_THYROID	SEC22C--CKAP2	3	0	SEC22C	21608	chr3:42590684:-	CKAP2	34970	chr13:53049338:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	SEC22C->SEC22_homolog_C,_vesicle_trafficking_protein,chr3:42589461-42642572:-,CKAP2->chr13:53029564-53050763:+,cytoskeleton_associated_protein_2	TT_THYROID	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	SEZ6L2--KIAA1522	3	0	SEZ6L2	3487	chr16:29908382:-	KIAA1522	28526	chr1:33239010:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	SEZ6L2->chr16:29882480-29910868:-,seizure_related_6_homolog_like_2,KIAA1522->KIAA1522,chr1:33207486-33240571:+	TT_THYROID	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	TEX41--TUBGCP3	3	0	TEX41	7881	chr2:145525847:+	TUBGCP3	56909	chr13:113181798:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	TEX41->chr2:145425534-145940216:+,testis_expressed_41_(non-protein_coding),TUBGCP3->chr13:113139325-113242481:-,tubulin_gamma_complex_associated_protein_3	TT_THYROID	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	RP11-681L8.1--STPG2	2	2	RP11-681L8.1	1346	chr4:98554629:-	STPG2	23575	chr4:98184732:-	ONLY_REF_SPLICE	NO	2	0	0.67	1	0.0229	0.0229	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	TT_THYROID	0.67	1	0.0458	TRUE	0	3	0	2	3	TRUE	ACH-001321
TT_THYROID	RP11-681L8.1--STPG2	2	2	RP11-681L8.1	2417	chr4:98493799:-	STPG2	22333	chr4:98480268:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0.0229	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	TT_THYROID	1	1	0.0458	TRUE	0	6	0	7	6	TRUE	ACH-001321
TT_THYROID	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0229	0.0114	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	TT_THYROID	0.75	1	0.0343	TRUE	0	2	0	5	2	TRUE	ACH-001321
TT_THYROID	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	4	1	0.43	0.0229	0.0114	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	TT_THYROID	0.43	1	0.0343	TRUE	0	0	0	4	0	TRUE	ACH-001321
TT_THYROID	ATXN1--ZFAND3	2	0	ATXN1	11220	chr6:16658007:-	ZFAND3	41224	chr6:38084348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	ATXN1->ataxin_1,chr6:16299343-16761722:-,ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	CALM2--CAPRIN2	2	0	CALM2	1161	chr2:47403580:-	CAPRIN2	16330	chr12:30906493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	CTBP2--PLEKHA1	2	0	CTBP2	11531	chr10:126727566:-	PLEKHA1	31875	chr10:124151819:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-,PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	CTD-2281E23.2--DLGAP2	2	0	CTD-2281E23.2	3418	chr8:1208883:+	DLGAP2	8510	chr8:1449532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx_FI:{Testis=[count:34=pct:32.4],Brain=[count:24=pct:3.6],Pituitary=[count:4=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Thyroid=[count:2=pct:1.1]},CTD-2281E23.2->chr8:1054882-1212580:+,DLGAP2->chr8:1449532-1656642:+,discs_large_homolog_associated_protein_2	TT_THYROID	1	1	0.0229	TRUE	49	61	1	13	0	FALSE	ACH-001321
TT_THYROID	DANCR--DNMT3A	2	0	DANCR	1530	chr4:53579126:+	DNMT3A	9059	chr2:25537030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,DNMT3A->ArcherDX_panel,DNA_(cytosine-5-)-methyltransferase_3_alpha,FoundationOne_panel,Oncogene{Bushman},chr2:25455845-25565459:-	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	LRP8--ADRM1	2	0	LRP8	7133	chr1:53741303:-	ADRM1	33238	chr20:60882427:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	LRP8->LDL_receptor_related_protein_8,chr1:53711217-53793742:-,ADRM1->adhesion_regulating_molecule_1,chr20:60877149-60883918:+	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	MRPL22--PCDHA1	2	0	MRPL22	5346	chr5:154336772:+	PCDHA1	17643	chr5:140358534:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	MRPL22->chr5:154320630-154348971:+,mitochondrial_ribosomal_protein_L22,PCDHA1->chr5:140165876-140391929:+,protocadherin_alpha_1	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	NNT--GNAS	2	0	NNT	1603	chr5:43603396:+	GNAS	48431	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	NNT->chr5:43602794-43707507:+,nicotinamide_nucleotide_transhydrogenase,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	POLR2J3--STYXL1	2	0	POLR2J3	5847	chr7:102207444:-	STYXL1	29372	chr7:75625917:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,STYXL1->chr7:75625656-75677322:-,serine/threonine/tyrosine_interacting-like_1	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	PUM1--ATP13A3	2	0	PUM1	23300	chr1:31422980:-	ATP13A3	67618	chr3:194126845:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,ATP13A3->ATPase_13A3,chr3:194123401-194219093:-	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	RP11-307P5.1--SASH1	2	0	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	TT_THYROID	1	1	0.0229	TRUE	0	2	0	37	2	FALSE	ACH-001321
TT_THYROID	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0114	0.0457	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TT_THYROID	1	1	0.0571	FALSE	515	4851	409	746	0	FALSE	ACH-001321
TT_THYROID	SNRPN--MYEF2	2	0	SNRPN	11083	chr15:25213229:+	MYEF2	35514	chr15:48441568:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},SNRPN->chr15:25068794-25223870:+,small_nuclear_ribonucleoprotein_polypeptide_N,MYEF2->chr15:48431625-48470714:-,myelin_expression_factor_2	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	TMEM14B--CBFA2T2	2	0	TMEM14B	9876	chr6:10770437:+	CBFA2T2	27309	chr20:32194762:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	TMEM14B->chr6:10747992-10852986:+,transmembrane_protein_14B,CBFA2T2->CBFA2/RUNX1_translocation_partner_2,chr20:32077881-32237842:+	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	VAMP4--EXD2	2	0	VAMP4	2453	chr1:171707489:-	EXD2	25514	chr14:69701417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	VAMP4->chr1:171669300-171711387:-,vesicle_associated_membrane_protein_4,EXD2->chr14:69658228-69709075:+,exonuclease_3'-5'_domain_containing_2	TT_THYROID	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	RP11-1L12.3--SLC5A12	1	2	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0114	0.0229	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	TT_THYROID	0.75	1	0.0343	TRUE	3	101	0	60	0	FALSE	ACH-001321
TT_THYROID	KMT2C--AP000345.1	1	1	KMT2C	20341	chr7:151927008:-	AP000345.1	75945	chr22:23825313:-	ONLY_REF_SPLICE	YES	13	0	0.13	1	0.0114	0.0114	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,AP000345.1->chr22:23804273-23829167:-	TT_THYROID	0.13	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001321
TT_THYROID	RP11-435B5.4--PITPNC1	1	1	RP11-435B5.4	2843	chr1:143465380:-	PITPNC1	29588	chr17:65628259:+	ONLY_REF_SPLICE	YES	4	95	0.33	0.02	0.0114	0.0114	RP11-435B5.4->chr1:143354963-143467632:-,PITPNC1->chr17:65373575-65693372:+,phosphatidylinositol_transfer_protein,_cytoplasmic_1	TT_THYROID	0.02	0.33	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-001321
TT_THYROID	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0114	0.0114	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	TT_THYROID	0.67	1	0.0228	TRUE	0	4	1	7	4	TRUE	ACH-001321
TT_THYROID	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	1346	chr4:98554629:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	NO	2	1	0.5	0.67	0.0114	0.0114	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	TT_THYROID	0.5	0.67	0.0228	TRUE	0	1	0	3	1	TRUE	ACH-001321
TT_THYROID	RP4-565E6.1--HYDIN	1	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	9	1	0.18	0.0114	0.0114	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	TT_THYROID	0.18	1	0.0228	TRUE	84	87	4	41	0	FALSE	ACH-001321
TT_THYROID	SETBP1--CXADRP3	1	1	SETBP1	5740	chr18:42449248:+	CXADRP3	25397	chr18:14479392:-	ONLY_REF_SPLICE	NO	5	1	0.29	0.67	0.0114	0.0114	SETBP1->Oncogene{Bushman},SET_binding_protein_1,chr18:42260138-42648475:+,CXADRP3->chr18:14477954-14499277:-,coxsackie_virus_and_adenovirus_receptor_pseudogene_3	TT_THYROID	0.29	0.67	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-001321
SNU5_STOMACH	TIMM23B--LINC00843	147	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3272	0.2528	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU5_STOMACH	1	1	1.58	TRUE	508	994	45	981	0	FALSE	ACH-000303
SNU5_STOMACH	TIMM23--RP11-464F9.1	100	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	364	1	0.22	0.99	0.9029	0.0271	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU5_STOMACH	0.22	0.99	0.93	TRUE	519	3926	326	965	0	FALSE	ACH-000303
SNU5_STOMACH	ARHGEF10L--ZNF595	72	18	ARHGEF10L	31309	chr1:17991090:+	ZNF595	42026	chr4:59323:+	ONLY_REF_SPLICE	YES	17	14	0.84	0.87	0.6501	0.1625	{Klijn_CCL:Stomach=1},ARHGEF10L->Rho_guanine_nucleotide_exchange_factor_10_like,chr1:17866330-18024369:+,ZNF595->chr4:53179-88099:+,zinc_finger_protein_595	SNU5_STOMACH	0.84	0.87	0.8126	TRUE	0	0	0	1	0	TRUE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	43	15	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.3882	0.1354	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0.95	1	0.5236	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	32	8	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1807	9	0.02	0.82	0.2889	0.0722	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0.02	0.82	0.3611	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	32	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2889	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	1	1	0.2889	FALSE	230	193	14	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	28	7	MT-ND4	1998	chrM:11757:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	NO	12716	2	0	0.95	0.2528	0.0632	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.95	0.316	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	23	16	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.2077	0.1445	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0.97	1	0.3522	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	20	8	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4786	44	0.01	0.39	0.1806	0.0722	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0.01	0.39	0.2528	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	21	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12839	9	0	0.71	0.1896	0.009	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.71	0.1986	FALSE	231	205	14	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	19	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1715	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	1	1	0.1715	FALSE	230	193	14	283	0	FALSE	ACH-000303
SNU5_STOMACH	C15orf57--CBX3	13	18	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	70	37	0.31	0.46	0.1174	0.1625	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU5_STOMACH	0.31	0.46	0.2799	TRUE	267	562	48	632	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	17	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1535	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	1	1	0.1535	FALSE	230	198	14	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND3--MT-ATP8	14	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1264	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	1	1	0.1264	FALSE	351	233	23	137	0	FALSE	ACH-000303
SNU5_STOMACH	NRIP1--AF127936.7	12	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	28	0	0.39	1	0.1083	0.0542	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU5_STOMACH	0.39	1	0.1625	FALSE	164	806	69	479	0	FALSE	ACH-000303
SNU5_STOMACH	NRIP1--AF127936.7	12	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.67	1	0.1083	0.0361	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU5_STOMACH	0.67	1	0.1444	FALSE	292	1546	117	613	0	FALSE	ACH-000303
SNU5_STOMACH	EIF1--PPIA	12	0	EIF1	1107	chr17:39845243:+	PPIA	7809	chr7:44836303:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1083	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	SNU5_STOMACH	1	1	0.1083	TRUE	0	0	0	7	0	TRUE	ACH-000303
SNU5_STOMACH	C15orf57--CBX3	8	14	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	67	38	0.25	0.37	0.0722	0.1264	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU5_STOMACH	0.25	0.37	0.1986	TRUE	267	562	48	632	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	11	1	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	4190	5	0	0.71	0.0993	0.009	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.71	0.1083	FALSE	41	30	6	102	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	9	7	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	3	532	0.84	0.03	0.0813	0.0632	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0.03	0.84	0.1445	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	9	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12287	44	0	0.24	0.0813	0.0451	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.24	0.1264	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-CO1	8	5	MT-ND5	2662	chrM:13998:+	MT-CO1	6245	chrM:6336:+	INCL_NON_REF_SPLICE	YES	1375	20171	0.01	0	0.0722	0.0451	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU5_STOMACH	0	0.01	0.1173	FALSE	8	12	2	9	0	FALSE	ACH-000303
SNU5_STOMACH	ANP32B--SEPT7	9	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0813	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	SNU5_STOMACH	1	1	0.0813	TRUE	1	1	0	18	1	TRUE	ACH-000303
SNU5_STOMACH	HSPBP1--GRK5	9	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0813	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU5_STOMACH	1	1	0.0813	TRUE	1	39	0	134	39	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	6	11	MT-ND5	2112	chrM:13448:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	4786	1	0	0.94	0.0542	0.0993	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.94	0.1535	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	6	11	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9	44	0.65	0.28	0.0542	0.0993	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0.28	0.65	0.1535	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	6	10	MT-ND5	2687	chrM:14023:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	681	9	0.02	0.64	0.0542	0.0903	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0.02	0.64	0.1445	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	8	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12839	44	0	0.17	0.0722	0.009	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.17	0.0812	FALSE	231	205	14	283	0	FALSE	ACH-000303
SNU5_STOMACH	NRIP1--AF127936.7	7	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.4	1	0.0632	0.0451	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU5_STOMACH	0.4	1	0.1083	FALSE	125	705	46	456	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	7	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	14242	0	0	1	0.0632	0.0271	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	1	0.0903	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	5	11	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9	9	0.64	0.64	0.0451	0.0993	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0.64	0.64	0.1444	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	6	6	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	13236	0	0	1	0.0542	0.0542	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	1	0.1084	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	3	18	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0.1625	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	1	1	0.1896	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	3	18	MT-ND5	2813	chrM:14149:+	MT-ATP8	5870	chrM:8423:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0.1625	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	1	1	0.1896	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	NPM1P24--SET	7	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	49	1140	0.14	0.01	0.0632	0.009	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU5_STOMACH	0.01	0.14	0.0722	FALSE	0	0	0	434	0	FALSE	ACH-000303
SNU5_STOMACH	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU5_STOMACH	1	1	0.0632	FALSE	13	9	0	364	0	FALSE	ACH-000303
SNU5_STOMACH	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU5_STOMACH	1	1	0.0632	FALSE	13	9	0	364	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	5	8	MT-ND5	2514	chrM:13850:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1490	44	0.01	0.23	0.0451	0.0722	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0.01	0.23	0.1173	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND6--MT-TE	6	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0.0361	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU5_STOMACH	1	1	0.0903	FALSE	499	1288	110	792	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND6--MT-TE	7	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU5_STOMACH	1	1	0.0632	FALSE	499	1288	110	792	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	6	3	MT-ND4	1531	chrM:11290:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16025	9	0	0.5	0.0542	0.0271	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.5	0.0813	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	RP11-96H19.1--RP11-446N19.1	6	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0542	0.0271	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU5_STOMACH	1	1	0.0813	FALSE	515	4851	409	746	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	6	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	14148	2	0	0.8	0.0542	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.8	0.0723	FALSE	231	205	14	283	0	FALSE	ACH-000303
SNU5_STOMACH	TCF12--DMD	5	6	TCF12	7716	chr15:57384089:+	DMD	100332	chrX:31986631:-	ONLY_REF_SPLICE	YES	43	0	0.2	1	0.0451	0.0542	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,DMD->chrX:31115794-33357558:-,dystrophin	SNU5_STOMACH	0.2	1	0.0993	TRUE	0	0	0	1	0	TRUE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	5	5	MT-ND4	1903	chrM:11662:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	12813	0	0	1	0.0451	0.0451	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	1	0.0902	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	5	5	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	12558	9	0	0.53	0.0451	0.0451	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.53	0.0902	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	3	12	MT-ND5	2592	chrM:13928:+	MT-ATP8	5878	chrM:8431:+	INCL_NON_REF_SPLICE	YES	1806	0	0.01	1	0.0271	0.1083	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0.01	1	0.1354	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	4	8	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	2275	1	0.01	0.92	0.0361	0.0722	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0.01	0.92	0.1083	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	4	7	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2377	44	0	0.2	0.0361	0.0632	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.2	0.0993	FALSE	216	209	16	281	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	3	11	MT-ND5	2712	chrM:14048:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	YES	13	5	0.52	0.74	0.0271	0.0993	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0.52	0.74	0.1264	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	4	5	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	12606	0	0	1	0.0361	0.0451	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	1	0.0812	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	4	5	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	12268	0	0	1	0.0361	0.0451	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	1	0.0812	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	4	5	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	12511	0	0	1	0.0361	0.0451	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	1	0.0812	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-CO1	3	9	MT-ND5	2755	chrM:14091:+	MT-CO1	6110	chrM:6201:+	INCL_NON_REF_SPLICE	NO	1	18679	0.92	0	0.0271	0.0813	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU5_STOMACH	0	0.92	0.1084	FALSE	8	12	2	9	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	3	8	MT-ND4	1951	chrM:11710:+	MT-ATP8	5405	chrM:8392:+	INCL_NON_REF_SPLICE	YES	13069	0	0	1	0.0271	0.0722	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	1	0.0993	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	3	8	MT-ND5	2288	chrM:13624:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	NO	1415	6	0.01	0.65	0.0271	0.0722	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0.01	0.65	0.0993	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	3	8	MT-ND5	2099	chrM:13435:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4638	44	0	0.2	0.0271	0.0722	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.2	0.0993	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	3	8	MT-ND5	2339	chrM:13675:+	MT-ATP8	5910	chrM:8463:+	INCL_NON_REF_SPLICE	NO	1309	6	0.01	0.65	0.0271	0.0722	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0.01	0.65	0.0993	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	4	3	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	14900	0	0	1	0.0361	0.0271	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	1	0.0632	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	3	7	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.53	0.0271	0.0632	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0.53	1	0.0903	FALSE	209	205	15	279	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	3	7	MT-ND5	2641	chrM:13977:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	1540	905	0.01	0.01	0.0271	0.0632	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0.01	0.01	0.0903	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	4	3	MT-ND5	1570	chrM:12906:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2337	9	0	0.44	0.0361	0.0271	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.44	0.0632	FALSE	42	36	7	104	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	3	6	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12183	44	0	0.17	0.0271	0.0542	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.17	0.0813	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	3	6	MT-ND4	2122	chrM:11881:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9198	9	0	0.5	0.0271	0.0542	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.5	0.0813	FALSE	231	215	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	3	6	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11904	44	0	0.17	0.0271	0.0542	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.17	0.0813	FALSE	231	215	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	4	2	MT-ND5	1969	chrM:13305:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	3685	532	0	0.01	0.0361	0.0181	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.01	0.0542	FALSE	43	37	8	105	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND3--MT-ATP8	4	1	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	NO	117	9	0.04	0.36	0.0361	0.009	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0.04	0.36	0.0451	FALSE	351	233	23	137	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	3	5	MT-ND4	1761	chrM:11520:+	MT-ATP8	5456	chrM:8443:+	INCL_NON_REF_SPLICE	YES	12296	1	0	0.89	0.0271	0.0451	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.89	0.0722	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	3	5	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	12692	2	0	0.8	0.0271	0.0451	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.8	0.0722	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND6--MT-TE	3	5	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0.0451	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU5_STOMACH	1	1	0.0722	FALSE	499	1288	110	792	0	FALSE	ACH-000303
SNU5_STOMACH	NPM1P24--SET	4	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	49	1145	0.09	0	0.0361	0.009	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU5_STOMACH	0	0.09	0.0451	FALSE	0	0	0	434	0	FALSE	ACH-000303
SNU5_STOMACH	NPM1P24--SET	4	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	49	1236	0.09	0	0.0361	0.009	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU5_STOMACH	0	0.09	0.0451	FALSE	0	0	0	434	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	3	4	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	12920	841	0	0.01	0.0271	0.0361	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.01	0.0632	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	4	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	1	1	0.0361	FALSE	230	198	14	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	4	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	1	1	0.0361	FALSE	231	204	14	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	3	3	MT-ND4	1453	chrM:11212:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	14736	0	0	1	0.0271	0.0271	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	1	0.0542	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	3	3	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	14868	0	0	1	0.0271	0.0271	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	1	0.0542	FALSE	231	217	16	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-CO1	3	3	MT-ND5	2112	chrM:13448:+	MT-CO1	6129	chrM:6220:+	INCL_NON_REF_SPLICE	YES	4819	18524	0	0	0.0271	0.0271	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU5_STOMACH	0	0	0.0542	FALSE	8	12	2	9	0	FALSE	ACH-000303
SNU5_STOMACH	FNBP4--NUP160	3	2	FNBP4	1375	chr11:47788621:-	NUP160	38568	chr11:47834967:-	ONLY_REF_SPLICE	YES	127	126	0.04	0.04	0.0271	0.0181	LOCAL_REARRANGEMENT:-:[10644],FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,NUP160->chr11:47799639-47870107:-,nucleoporin_160kDa	SNU5_STOMACH	0.04	0.04	0.0452	TRUE	0	0	0	1	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14148	44	0	0.1	0.0271	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.1	0.0452	FALSE	231	205	14	283	0	FALSE	ACH-000303
SNU5_STOMACH	ADAP1--SUN1	3	1	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	339	303	0.01	0.01	0.0271	0.009	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SNU5_STOMACH	0.01	0.01	0.0361	FALSE	16	22	0	27	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	3	1	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4316	44	0	0.08	0.0271	0.009	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	0	0.08	0.0361	FALSE	41	30	6	102	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-CO1	3	1	MT-ND5	2794	chrM:14130:+	MT-CO1	7036	chrM:7127:+	INCL_NON_REF_SPLICE	YES	0	18195	1	0	0.0271	0.009	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU5_STOMACH	0	1	0.0361	FALSE	8	12	2	9	0	FALSE	ACH-000303
SNU5_STOMACH	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	49	1132	0.08	0	0.0271	0.009	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU5_STOMACH	0	0.08	0.0361	FALSE	0	0	0	434	0	FALSE	ACH-000303
SNU5_STOMACH	FTH1--ACTG1	3	0	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SNU5_STOMACH	1	1	0.0271	TRUE	0	0	0	64	0	FALSE	ACH-000303
SNU5_STOMACH	FTH1--ACTG1	3	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SNU5_STOMACH	1	1	0.0271	TRUE	0	0	0	64	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1244	chrM:11003:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	1	1	0.0271	FALSE	231	204	14	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	1	1	0.0271	FALSE	230	193	14	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1228	chrM:10987:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	1	1	0.0271	FALSE	231	204	14	283	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND5--MT-ATP8	3	0	MT-ND5	1160	chrM:12496:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU5_STOMACH	1	1	0.0271	FALSE	41	30	6	101	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU5_STOMACH	1	1	0.0271	FALSE	499	1288	110	792	0	FALSE	ACH-000303
SNU5_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU5_STOMACH	1	1	0.0271	FALSE	499	1288	110	792	0	FALSE	ACH-000303
SNU5_STOMACH	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0.0271	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU5_STOMACH	1	1	0.0452	FALSE	467	2173	244	435	0	FALSE	ACH-000303
SNU5_STOMACH	GGACT--PCCA	2	2	GGACT	3102	chr13:101236079:-	PCCA	36410	chr13:101101506:+	ONLY_REF_SPLICE	YES	84	26	0.05	0.13	0.0181	0.0181	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	SNU5_STOMACH	0.05	0.13	0.0362	TRUE	0	2	0	2	1	FALSE	ACH-000303
SNU5_STOMACH	CAPZA2--MET	2	0	CAPZA2	3371	chr7:116502704:+	MET	27625	chr7:116339125:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],{Klijn_CCL:Stomach=1,Kidney=1},LOCAL_REARRANGEMENT:+:[12684],CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	SNU5_STOMACH	1	1	0.0181	TRUE	0	0	0	3	0	TRUE	ACH-000303
SNU5_STOMACH	PTRH2--RP11-632K20.7	2	0	PTRH2	1256	chr17:57784732:-	RP11-632K20.7	13743	chr15:32825569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	PTRH2->chr17:57751997-57784987:-,peptidyl-tRNA_hydrolase_2,RP11-632K20.7->chr15:32812049-32829127:-	SNU5_STOMACH	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000303
SNU5_STOMACH	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU5_STOMACH	1	1	0.0181	TRUE	62	24	1	171	0	FALSE	ACH-000303
SNU5_STOMACH	FNBP4--NUP160	1	2	FNBP4	2468	chr11:47786822:-	NUP160	29772	chr11:47859175:-	ONLY_REF_SPLICE	YES	89	94	0.03	0.03	0.009	0.0181	LOCAL_REARRANGEMENT:-:[10644],FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,NUP160->chr11:47799639-47870107:-,nucleoporin_160kDa	SNU5_STOMACH	0.03	0.03	0.0271	TRUE	0	0	0	6	0	FALSE	ACH-000303
SNU5_STOMACH	GGACT--PCCA	1	2	GGACT	3102	chr13:101236079:-	PCCA	31994	chr13:100982815:+	ONLY_REF_SPLICE	YES	84	20	0.03	0.13	0.009	0.0181	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	SNU5_STOMACH	0.03	0.13	0.0271	TRUE	1	4	1	1	0	FALSE	ACH-000303
SNU5_STOMACH	SPAG9--NME2	1	2	SPAG9	1512	chr17:49197715:-	NME2	49496	chr17:49237341:+	ONLY_REF_SPLICE	YES	157	1119	0.02	0	0.009	0.0181	LOCAL_INVERSION:-:+:[32725],SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,NME2->NME/NM23_nucleoside_diphosphate_kinase_2,chr17:49230951-49249105:+	SNU5_STOMACH	0	0.02	0.0271	FALSE	0	0	0	2	0	FALSE	ACH-000303
SNU5_STOMACH	RP5-1158E12.3--TSR1	1	1	RP5-1158E12.3	3112	chrX:45708809:-	TSR1	15368	chr17:2232769:-	ONLY_REF_SPLICE	YES	4	155	0.33	0.01	0.009	0.009	RP5-1158E12.3->chrX:45707328-45710920:-,TSR1->TSR1,_ribosome_maturation_factor,chr17:2225797-2240801:-	SNU5_STOMACH	0.01	0.33	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000303
SNU626_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	120	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1967	0.1995	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	1.3962	TRUE	508	994	45	981	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	66	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	204	6	0.26	0.92	0.6582	0.0399	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU626_CENTRAL_NERVOUS_SYSTEM	0.26	0.92	0.6981	TRUE	519	3926	326	965	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	56	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5585	0.0598	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.6183	FALSE	462	80	0	856	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	197	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	10	0	0.95	1	0.0399	1.9646	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU626_CENTRAL_NERVOUS_SYSTEM	0.95	1	2.0045	FALSE	344	826	44	306	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	14	141	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	1	0.97	0.99	0.1396	1.4061	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU626_CENTRAL_NERVOUS_SYSTEM	0.97	0.99	1.5457	FALSE	344	821	44	306	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	5	164	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	NO	4	1	0.98	0.99	0.0499	1.6355	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU626_CENTRAL_NERVOUS_SYSTEM	0.98	0.99	1.6854	FALSE	344	826	44	306	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	137	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	6	0	0.96	1	0.0299	1.3662	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU626_CENTRAL_NERVOUS_SYSTEM	0.96	1	1.3961	FALSE	344	826	44	306	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	35	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.349	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.349	TRUE	7	10	0	216	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	17	42	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	13160	0	0	1	0.1695	0.4188	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU626_CENTRAL_NERVOUS_SYSTEM	0	1	0.5883	FALSE	328	800	43	304	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	24	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	13466	6	0	0.82	0.2393	0.0299	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0.82	0.2692	FALSE	230	193	14	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	SAMD5--SASH1	24	3	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	8	3	0.77	0.9	0.2393	0.0299	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SNU626_CENTRAL_NERVOUS_SYSTEM	0.77	0.9	0.2692	TRUE	53	396	64	110	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	20	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1995	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.1995	FALSE	499	1288	110	792	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	20	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1995	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.1995	TRUE	0	0	0	518	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	12	31	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	15	0	0.74	1	0.1197	0.3091	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU626_CENTRAL_NERVOUS_SYSTEM	0.74	1	0.4288	FALSE	344	826	44	306	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	17	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	36	1	0.35	0.1695	0.0199	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU626_CENTRAL_NERVOUS_SYSTEM	0.35	1	0.1894	TRUE	347	1186	183	220	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	9	31	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	422	0	0.09	1	0.0898	0.3091	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU626_CENTRAL_NERVOUS_SYSTEM	0.09	1	0.3989	FALSE	344	827	44	306	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP4-565E6.1--HYDIN	14	5	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	5	1	0.79	0.1396	0.0499	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SNU626_CENTRAL_NERVOUS_SYSTEM	0.79	1	0.1895	TRUE	456	1387	91	133	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	NIPA2--POLA1	15	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1496	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.1496	TRUE	46	1352	75	139	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	13	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	74	79	0.21	0.2	0.1296	0.0698	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU626_CENTRAL_NERVOUS_SYSTEM	0.2	0.21	0.1994	TRUE	267	562	48	632	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	14	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.1396	0.0199	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU626_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.1595	FALSE	499	1288	110	792	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	42	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	6158	0	0.01	1	0.0299	0.4188	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU626_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.4487	FALSE	344	827	44	306	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	41	MT-ND4	1276	chrM:11035:+	MT-ND4L	5657	chrM:10748:+	INCL_NON_REF_SPLICE	YES	35	0	0.56	1	0.0299	0.4089	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU626_CENTRAL_NERVOUS_SYSTEM	0.56	1	0.4388	FALSE	344	827	44	306	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	31	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	16	0	0.69	1	0.0399	0.3091	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU626_CENTRAL_NERVOUS_SYSTEM	0.69	1	0.349	FALSE	344	826	44	306	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	11	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	47	1	0.23	0.1097	0.0299	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU626_CENTRAL_NERVOUS_SYSTEM	0.23	1	0.1396	TRUE	465	1949	224	605	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-RNR2	11	2	MT-ND4	1209	chrM:10968:+	MT-RNR2	5415	chrM:1707:+	INCL_NON_REF_SPLICE	YES	13457	0	0	1	0.1097	0.0199	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU626_CENTRAL_NERVOUS_SYSTEM	0	1	0.1296	FALSE	13	19	3	21	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-RNR2	9	10	MT-ND4	2320	chrM:12079:+	MT-RNR2	5386	chrM:1678:+	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0898	0.0997	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU626_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.1895	FALSE	13	18	3	21	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	11	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	49	0.93	0.21	0.1097	0.0199	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU626_CENTRAL_NERVOUS_SYSTEM	0.21	0.93	0.1296	FALSE	16	356	14	466	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	10	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0997	0.0499	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.1496	FALSE	462	80	0	856	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	ZMYM6--RNF139	11	1	ZMYM6	1154	chr1:35497416:-	RNF139	30934	chr8:125498072:+	ONLY_REF_SPLICE	YES	7	61	0.63	0.16	0.1097	0.01	ZMYM6->chr1:35447134-35497342:-,chr1:35449523-35497569:-,zinc_finger_MYM-type_containing_6,RNF139->Oncogene{Bushman},chr8:125486979-125500155:+,ring_finger_protein_139	SNU626_CENTRAL_NERVOUS_SYSTEM	0.16	0.63	0.1197	TRUE	0	0	0	1	0	TRUE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	11	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1097	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.1097	FALSE	13	9	0	364	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	7	14	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	8042	529	0	0.04	0.0698	0.1396	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0.04	0.2094	FALSE	231	215	16	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	10	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	12822	28207	0	0	0.0997	0.01	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0	0.1097	FALSE	183	104	9	328	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	6	17	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	15979	0	0	1	0.0598	0.1695	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	1	0.2293	FALSE	231	217	16	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	29	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.0299	0.2892	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU626_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.3191	FALSE	344	821	44	306	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	9	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0898	0.0499	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.1397	FALSE	499	1288	110	792	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	9	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13368	6	0	0.67	0.0898	0.0299	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0.67	0.1197	FALSE	230	198	14	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	7	11	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	16439	6	0	0.75	0.0698	0.1097	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0.75	0.1795	FALSE	231	217	16	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	9	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	11	1	0.52	0.0898	0.0299	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU626_CENTRAL_NERVOUS_SYSTEM	0.52	1	0.1197	TRUE	458	1351	185	561	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	6	14	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15585	34	0	0.37	0.0598	0.1396	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0.37	0.1994	FALSE	231	217	16	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	9	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	15425	28673	0	0	0.0898	0.01	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0	0.0998	FALSE	183	104	9	328	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	6	13	MT-ND4	1756	chrM:11515:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	15967	0	0	1	0.0598	0.1296	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	1	0.1894	FALSE	231	217	16	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	9	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0898	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0898	FALSE	499	1288	110	792	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0898	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0898	FALSE	462	80	0	856	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0898	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0898	TRUE	0	0	0	434	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	ELN--MT-ND4L	8	2	ELN	25792	chr7:73483115:+	MT-ND4L	29915	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1985	0	0.01	1	0.0798	0.0199	ELN->Oncogene{Bushman},chr7:73442119-73484237:+,elastin,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU626_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0997	FALSE	0	0	0	2	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	7	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	72	81	0.14	0.13	0.0698	0.0499	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU626_CENTRAL_NERVOUS_SYSTEM	0.13	0.14	0.1197	TRUE	267	562	48	632	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	7	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0698	0.0499	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.1197	TRUE	477	1352	189	275	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	12	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15930	34	0	0.33	0.0499	0.1197	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0.33	0.1696	FALSE	231	217	16	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	19	MT-ND4	2255	chrM:12014:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	2292	0	0.01	1	0.0299	0.1895	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.2194	FALSE	216	209	16	281	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	15	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	16386	0	0	1	0.0399	0.1496	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	1	0.1895	FALSE	231	217	16	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	6	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0.0698	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.1296	FALSE	462	80	0	856	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	ZMYM6--RNF139	7	3	ZMYM6	2422	chr1:35496148:-	RNF139	30934	chr8:125498072:+	ONLY_REF_SPLICE	YES	27	61	0.27	0.14	0.0698	0.0299	ZMYM6->chr1:35447134-35497342:-,chr1:35449523-35497569:-,zinc_finger_MYM-type_containing_6,RNF139->Oncogene{Bushman},chr8:125486979-125500155:+,ring_finger_protein_139	SNU626_CENTRAL_NERVOUS_SYSTEM	0.14	0.27	0.0997	TRUE	0	0	0	1	0	TRUE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	10	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	NO	16655	835	0	0.02	0.0499	0.0997	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.1496	FALSE	231	217	16	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	9	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17422	0	0	1	0.0499	0.0898	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	1	0.1397	FALSE	231	217	16	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	13	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	4	0	0.81	1	0.0399	0.1296	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU626_CENTRAL_NERVOUS_SYSTEM	0.81	1	0.1695	FALSE	344	826	44	306	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	AVEN--AGPS	7	0	AVEN	2575	chr15:34295233:-	AGPS	13981	chr2:178284997:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0698	0	AVEN->apoptosis_and_caspase_activation_inhibitor,chr15:34158428-34331377:-,AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0698	TRUE	0	0	0	1	0	TRUE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0698	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0698	TRUE	1	39	0	134	39	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	15	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	NO	16447	0	0	1	0.0299	0.1496	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	1	0.1795	FALSE	231	217	16	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	15	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2731	34	0.01	0.35	0.0299	0.1496	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0.01	0.35	0.1795	FALSE	216	209	16	281	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	15	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	42	0	0.3	1	0.0299	0.1496	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU626_CENTRAL_NERVOUS_SYSTEM	0.3	1	0.1795	FALSE	344	827	44	306	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	5	6	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0.0598	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.1097	FALSE	462	80	0	856	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	6	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	13054	28782	0	0	0.0598	0.01	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0	0.0698	FALSE	183	104	9	328	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	9	MT-ND4	1844	chrM:11603:+	MT-ATP8	5503	chrM:8490:+	INCL_NON_REF_SPLICE	YES	16405	1091	0	0.01	0.0399	0.0898	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.1297	FALSE	231	217	16	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	DNAJC25--UGCG	6	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0598	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0598	TRUE	50	73	10	50	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	12	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	NO	16547	460	0	0.03	0.0299	0.1197	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.1496	FALSE	231	217	16	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	5	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0499	0.0399	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0898	FALSE	515	4851	409	746	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	4	7	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3975	29163	0	0	0.0399	0.0698	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0	0.1097	FALSE	183	104	9	328	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	3	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13508	34	0	0.19	0.0499	0.0299	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0.19	0.0798	FALSE	230	198	14	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15532	6	0	0.57	0.0499	0.0299	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0.57	0.0798	FALSE	231	205	14	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	5	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	12057	26650	0	0	0.0499	0.01	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0	0.0599	FALSE	183	104	9	328	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	9	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	17557	0	0	1	0.0299	0.0898	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	1	0.1197	FALSE	231	217	16	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-RNR2	3	9	MT-ND4	1923	chrM:11682:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	16475	0	0	1	0.0299	0.0898	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU626_CENTRAL_NERVOUS_SYSTEM	0	1	0.1197	FALSE	13	19	3	21	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND6	5	1	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	2801	1	0	0.0499	0.01	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SNU626_CENTRAL_NERVOUS_SYSTEM	0	1	0.0599	FALSE	26	124	4	93	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	8	MT-ATP6	1477	chrM:9003:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	9790	26312	0	0	0.0299	0.0798	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0	0.1097	FALSE	183	104	9	328	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MYL9--MT-CO3	5	0	MYL9	4581	chr20:35177727:+	MT-CO3	8123	chrM:9247:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0499	FALSE	29	0	0	10	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	5	0	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0499	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0499	TRUE	6	15	3	35	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP11-319G9.5--WWOX	5	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0499	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0499	FALSE	154	425	28	76	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	3	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	8048	0	0	1	0.0399	0.0299	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	1	0.0698	FALSE	230	193	14	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12471	28673	0	0	0.0399	0.01	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0	0.0499	FALSE	183	104	9	328	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	4	1	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	14678	26744	0	0	0.0399	0.01	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0	0.0499	FALSE	183	104	9	328	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	5	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	YES	13713	0	0	1	0.0299	0.0499	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	1	0.0798	FALSE	231	204	14	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	4	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	NO	13466	0	0	1	0.0299	0.0399	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	1	0.0698	FALSE	230	193	14	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0399	FALSE	344	821	44	306	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0.0399	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0698	FALSE	344	821	44	306	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MYL9--MT-CO3	4	0	MYL9	4936	chr20:35178082:+	MT-CO3	8154	chrM:9278:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0399	FALSE	29	0	0	10	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	4	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0399	TRUE	4	2	0	28	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	3	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	8586	0	0	1	0.0299	0.0299	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	1	0.0598	FALSE	230	193	14	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP11-308N19.1--RP11-308N19.4	3	3	RP11-308N19.1	6003	chr9:109320864:+	RP11-308N19.4	15583	chr9:109427034:+	ONLY_REF_SPLICE	YES	15	1	0.29	0.86	0.0299	0.0299	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	SNU626_CENTRAL_NERVOUS_SYSTEM	0.29	0.86	0.0598	FALSE	0	0	0	4	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	2	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	NO	9085	529	0	0.01	0.0299	0.0199	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU626_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0498	FALSE	230	193	14	283	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MT-TL1--MT-RNR2	3	2	MT-TL1	1002	chrM:3231:+	MT-RNR2	5023	chrM:2618:+	INCL_NON_REF_SPLICE	YES	0	674	1	0.01	0.0299	0.0199	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU626_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0498	FALSE	7	521	16	32	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	3	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	67	1	0.06	0.0299	0.01	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU626_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0399	TRUE	15	36	8	26	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0.0499	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0698	TRUE	274	363	69	150	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	KLHL3--SPOCK1	3	0	KLHL3	30410	chr5:136955290:-	SPOCK1	42362	chr5:136602744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0	NEIGHBORS[19121],KLHL3->chr5:136953189-137071779:-,kelch_like_family_member_3,SPOCK1->chr5:136310987-136934068:-,sparc/osteonectin,_cwcv_and_kazal-like_domains_proteoglycan_(testican)_1	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0299	FALSE	0	2	0	2	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	ZMYM6--TRMT12	3	0	ZMYM6	2422	chr1:35496148:-	TRMT12	31533	chr8:125474268:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	ZMYM6->chr1:35447134-35497342:-,chr1:35449523-35497569:-,zinc_finger_MYM-type_containing_6,TRMT12->chr8:125463048-125474391:+,tRNA_methyltransferase_12_homolog_(S._cerevisiae)	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0299	TRUE	0	0	0	1	0	TRUE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP11-308N19.1--RP11-308N19.4	2	2	RP11-308N19.1	4891	chr9:109262786:+	RP11-308N19.4	15583	chr9:109427034:+	ONLY_REF_SPLICE	YES	17	1	0.19	0.8	0.0199	0.0199	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	SNU626_CENTRAL_NERVOUS_SYSTEM	0.19	0.8	0.0398	FALSE	0	0	0	4	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	TXNRD1--CHST11	2	2	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	YES	696	15	0.01	0.21	0.0199	0.0199	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	SNU626_CENTRAL_NERVOUS_SYSTEM	0.01	0.21	0.0398	FALSE	0	2	1	13	2	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	2	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0.01	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0299	TRUE	254	575	65	124	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	WWOX--RP11-319G9.5	2	1	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	33	0	0.08	1	0.0199	0.01	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	SNU626_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.0299	FALSE	33	33	2	19	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	AC040160.1--CADM1	2	0	AC040160.1	2155	chr16:67257729:-	CADM1	9542	chr11:115270231:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	AC040160.1->chr16:67244251-67260930:-,CADM1->cell_adhesion_molecule_1,chr11:115039938-115375675:-	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	CD2AP--SLFN12	2	0	CD2AP	14168	chr6:47563762:+	SLFN12	30659	chr17:33750087:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	CD2AP->CD2-associated_protein,chr6:47445525-47594999:+,SLFN12->chr17:33738079-33760302:-,schlafen_family_member_12	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	23932	chr5:96058343:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0199	TRUE	2	9	1	4	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	FARS2--RP3-380B8.4	2	0	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0199	FALSE	27	82	4	18	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	LINC00478--AKIRIN1	2	0	LINC00478	7469	chr21:17764005:+	AKIRIN1	26745	chr1:39463843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LINC00478->chr21:17442842-17999716:+,AKIRIN1->akirin_1,chr1:39456895-39471731:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MFSD8--KLF5	2	0	MFSD8	12326	chr4:128842679:-	KLF5	23101	chr13:73635999:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	MFSD8->chr4:128838960-128887150:-,major_facilitator_superfamily_domain_containing_8,KLF5->Kruppel-like_factor_5_(intestinal),Oncogene{Bushman},chr13:73629114-73651676:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	MMP14--PRMT5	2	0	MMP14	1369	chr14:23306134:+	PRMT5	16005	chr14:23396023:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LOCAL_INVERSION:+:-:[71484],MMP14->Oncogene{Bushman},chr14:23305766-23318236:+,matrix_metallopeptidase_14,PRMT5->chr14:23389720-23398794:-,protein_arginine_methyltransferase_5	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	7741	chr5:95644428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0199	TRUE	0	0	0	4	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0199	TRUE	0	2	1	13	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP11-308N19.1--RP11-308N19.4	2	0	RP11-308N19.1	6003	chr9:109320864:+	RP11-308N19.4	18874	chr9:109435150:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0199	FALSE	0	0	0	3	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.01	0.0399	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU626_CENTRAL_NERVOUS_SYSTEM	1	1	0.0499	FALSE	407	2205	196	549	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP11-308N19.1--RP11-308N19.4	1	3	RP11-308N19.1	7091	chr9:109350745:+	RP11-308N19.4	15583	chr9:109427034:+	ONLY_REF_SPLICE	YES	8	1	0.33	0.8	0.01	0.0299	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	SNU626_CENTRAL_NERVOUS_SYSTEM	0.33	0.8	0.0399	FALSE	2	0	0	5	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP11-308N19.1--RP11-308N19.4	1	2	RP11-308N19.1	1799	chr9:109041471:+	RP11-308N19.4	15583	chr9:109427034:+	ONLY_REF_SPLICE	YES	19	1	0.14	0.75	0.01	0.0199	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	SNU626_CENTRAL_NERVOUS_SYSTEM	0.14	0.75	0.0299	FALSE	1	0	0	2	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	RP4-565E6.1--HYDIN	1	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	NO	0	20	1	0.13	0.01	0.0199	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SNU626_CENTRAL_NERVOUS_SYSTEM	0.13	1	0.0299	TRUE	84	87	4	41	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	GATS--PILRB	1	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	81	126	0.02	0.02	0.01	0.01	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	SNU626_CENTRAL_NERVOUS_SYSTEM	0.02	0.02	0.02	TRUE	57	41	2	35	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	KIAA1958--SNX30	1	1	KIAA1958	6984	chr9:115408102:+	SNX30	22440	chr9:115567056:+	ONLY_REF_SPLICE	YES	21	6	0.09	0.25	0.01	0.01	{Klijn_CCL:Lung=1,Colo-Rectal=1},NEIGHBORS[81441],KIAA1958->KIAA1958,chr9:115249127-115431677:+,SNX30->chr9:115513118-115643951:+,sorting_nexin_family_member_30	SNU626_CENTRAL_NERVOUS_SYSTEM	0.09	0.25	0.02	FALSE	0	1	0	1	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	KIAA1958--SNX30	1	1	KIAA1958	3467	chr9:115337531:+	SNX30	22440	chr9:115567056:+	ONLY_REF_SPLICE	NO	32	6	0.06	0.25	0.01	0.01	{Klijn_CCL:Lung=1,Colo-Rectal=1},NEIGHBORS[81441],KIAA1958->KIAA1958,chr9:115249127-115431677:+,SNX30->chr9:115513118-115643951:+,sorting_nexin_family_member_30	SNU626_CENTRAL_NERVOUS_SYSTEM	0.06	0.25	0.02	FALSE	5	9	0	7	0	FALSE	ACH-000370
SNU626_CENTRAL_NERVOUS_SYSTEM	METTL16--PAFAH1B1	1	1	METTL16	8197	chr17:2367502:-	PAFAH1B1	32495	chr17:2568666:+	ONLY_REF_SPLICE	NO	38	214	0.05	0.01	0.01	0.01	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},LOCAL_INVERSION:-:+:[81319],METTL16->chr17:2308856-2415185:-,methyltransferase_like_16,PAFAH1B1->chr17:2496504-2588909:+,platelet_activating_factor_acetylhydrolase_1b_regulatory_subunit_1	SNU626_CENTRAL_NERVOUS_SYSTEM	0.01	0.05	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000370
T3M10_LUNG	NUP62--NEDD4L	4	3	NUP62	9564	chr19:50412233:-	NEDD4L	34493	chr18:55983231:+	INCL_NON_REF_SPLICE	NO	32	36	0.18	0.16	0.0591	0.0443	NUP62->chr19:50410082-50433020:-,nucleoporin_62kDa,NEDD4L->chr18:55711599-56068772:+,neural_precursor_cell_expressed,_developmentally_down-regulated_4-like,_E3_ubiquitin_protein_ligase	T3M10_LUNG	0.16	0.18	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	SLC3A2--RRBP1	4	1	SLC3A2	7908	chr11:62650444:+	RRBP1	22955	chr20:17622552:-	INCL_NON_REF_SPLICE	NO	84	59	0.06	0.08	0.0591	0.0148	SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2,RRBP1->chr20:17594323-17662940:-,ribosome_binding_protein_1	T3M10_LUNG	0.06	0.08	0.0739	TRUE	0	0	0	1	0	FALSE	ACH-000813
T3M10_LUNG	AP2B1--CAP1	3	1	AP2B1	33503	chr17:34052738:+	CAP1	49591	chr1:40537565:+	INCL_NON_REF_SPLICE	YES	42	75	0.09	0.05	0.0443	0.0148	AP2B1->adaptor_related_protein_complex_2_beta_1_subunit,chr17:33905065-34053436:+,CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+	T3M10_LUNG	0.05	0.09	0.0591	TRUE	0	0	0	1	0	FALSE	ACH-000813
T3M10_LUNG	ANP32E--AHSA1	3	0	ANP32E	9307	chr1:150193017:-	AHSA1	16120	chr14:77926071:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,AHSA1->activator_of_Hsp90_ATPase_activity_1,chr14:77924213-77935817:+	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	AP1S3--FARSB	3	0	AP1S3	1580	chr2:224702165:-	FARSB	31988	chr2:223464802:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	AP1S3->adaptor_related_protein_complex_1_sigma_3_subunit,chr2:224616403-224702744:-,FARSB->chr2:223435255-223521056:-,phenylalanyl-tRNA_synthetase_beta_subunit	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	ARF3--RPL10	3	0	ARF3	7964	chr12:49332416:-	RPL10	17285	chrX:153627887:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	ARF3->ADP_ribosylation_factor_3,chr12:49329506-49351334:-,RPL10->Oncogene{Bushman},chrX:153618315-153637504:+,ribosomal_protein_L10	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	ATP6V0C--SHISA5	3	0	ATP6V0C	3321	chr16:2569792:+	SHISA5	7280	chr3:48541728:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	ATP6V0C->ATPase_H+_transporting_V0_subunit_c,chr16:2563871-2570219:+,SHISA5->chr3:48509197-48542259:-,shisa_family_member_5	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	BBS9--THBS1	3	0	BBS9	2893	chr7:33185948:+	THBS1	44979	chr15:39883761:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	BBS9->Bardet-Biedl_syndrome_9,chr7:33168856-33645680:+,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	LRP1--EEF1A1	3	0	LRP1	31117	chr12:57574240:+	EEF1A1	65876	chr6:74229689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,LRP1->LDL_receptor_related_protein_1,chr12:57522276-57607134:+,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	PRRC2A--PCK2	3	0	PRRC2A	7542	chr6:31595869:+	PCK2	24665	chr14:24568283:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	PRRC2A->chr6:31588497-31605548:+,proline_rich_coiled-coil_2A,PCK2->chr14:24563262-24579807:+,phosphoenolpyruvate_carboxykinase_2,_mitochondrial	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	RDX--SS18	3	0	RDX	18191	chr11:110101311:-	SS18	50746	chr18:23596784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	RDX->chr11:110045605-110167447:-,radixin,SS18->Oncogene{Bushman},SS18,_nBAF_chromatin_remodeling_complex_subunit,chr18:23596578-23671181:-	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	2	0	TRUE	ACH-000813
T3M10_LUNG	RP11-96H19.1--RP11-446N19.1	3	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	T3M10_LUNG	1	1	0.0443	FALSE	515	4851	409	746	0	FALSE	ACH-000813
T3M10_LUNG	SMG7--GRAMD1B	3	0	SMG7	25801	chr1:183518984:+	GRAMD1B	60842	chr11:123497366:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	SMG7->SMG7_nonsense_mediated_mRNA_decay_factor,chr1:183441351-183567381:+,GRAMD1B->GRAM_domain_containing_1B,chr11:123396344-123498482:+	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	SMOX--ABHD16A	3	0	SMOX	6831	chr20:4155910:+	ABHD16A	22919	chr6:31659695:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	SMOX->chr20:4101627-4168394:+,spermine_oxidase,ABHD16A->abhydrolase_domain_containing_16A,chr6:31654726-31671221:-	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	THOC1--CDKN3	3	0	THOC1	6100	chr18:260186:-	CDKN3	28778	chr14:54875463:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	THOC1->THO_complex_1,chr18:214520-268050:-,CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	UBE2F--LRRFIP1	3	0	UBE2F	8435	chr2:238903451:+	LRRFIP1	58313	chr2:238688065:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	GTEx&tcga_normals:1/3694=0.03%,UBE2F->chr2:238875469-238951236:+,ubiquitin_conjugating_enzyme_E2_F_(putative),LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	ZFPL1--MT-ND1	3	0	ZFPL1	3287	chr11:64853981:+	MT-ND1	8897	chrM:4027:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	ZFPL1->chr11:64851695-64855870:+,zinc_finger_protein_like_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	T3M10_LUNG	1	1	0.0443	FALSE	0	0	0	1	0	FALSE	ACH-000813
T3M10_LUNG	ZNF394--PDZD11	3	0	ZNF394	1203	chr7:99097745:-	PDZD11	13021	chrX:69507644:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	ZNF394->chr7:99084142-99097947:-,zinc_finger_protein_394,PDZD11->PDZ_domain_containing_11,chrX:69506445-69510364:-	T3M10_LUNG	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	CC2D1A--ZSWIM4	2	0	CC2D1A	2437	chr19:14020771:+	ZSWIM4	26069	chr19:13928030:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	LOCAL_REARRANGEMENT:+:[73970],CC2D1A->chr19:14017014-14041692:+,coiled-coil_and_C2_domain_containing_1A,ZSWIM4->chr19:13906274-13943044:+,zinc_finger_SWIM-type_containing_4	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	CCDC30--GCLC	2	0	CCDC30	7562	chr1:42948487:+	GCLC	58578	chr6:53374048:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	CCDC30->chr1:42929001-43120335:+,coiled-coil_domain_containing_30,GCLC->chr6:53362139-53481768:-,glutamate-cysteine_ligase_catalytic_subunit	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	CLPTM1L--TPCN2	2	0	CLPTM1L	14546	chr5:1322992:-	TPCN2	26569	chr11:68830352:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-,TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	DNMT1--PTGIR	2	0	DNMT1	25708	chr19:10259560:-	PTGIR	45538	chr19:47124929:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,PTGIR->chr19:47123725-47128375:-,prostaglandin_I2_(prostacyclin)_receptor_(IP)	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	EIF3A--VCL	2	0	EIF3A	13766	chr10:120810711:-	VCL	26891	chr10:75802841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	EIF3A->Oncogene{Bushman},chr10:120794356-120840316:-,eukaryotic_translation_initiation_factor_3_subunit_A,VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	HSPD1--CDC20	2	0	HSPD1	9779	chr2:198354921:-	CDC20	20392	chr1:43828622:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	HSPD1->Oncogene{Bushman},chr2:198351305-198381461:-,heat_shock_protein_family_D_(Hsp60)_member_1,CDC20->Oncogene{Bushman},cell_division_cycle_20,chr1:43824626-43828874:+	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	NPHP4--L3MBTL3	2	0	NPHP4	6941	chr1:6021854:-	L3MBTL3	45809	chr6:130343372:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	NPHP4->chr1:5922871-6052533:-,nephronophthisis_4,L3MBTL3->chr6:130334844-130462594:+,l(3)mbt-like_3_(Drosophila)	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	OTUD5--DAZAP1	2	0	OTUD5	1155	chrX:48815494:-	DAZAP1	17707	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	OTUD5->OTU_deubiquitinase_5,chrX:48779305-48815648:-,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	QRSL1--RTN4IP1	2	0	QRSL1	1128	chr6:107077580:+	RTN4IP1	22687	chr6:107050797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[80],QRSL1->chr6:107077453-107116292:+,glutaminyl-tRNA_synthase_(glutamine-hydrolyzing)-like_1,RTN4IP1->Oncogene{Bushman},chr6:107018903-107077373:-,reticulon_4_interacting_protein_1	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	SERF2--C10orf76	2	0	SERF2	3155	chr15:44077732:+	C10orf76	36879	chr10:103716480:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	SERF2->chr15:44069285-44094787:+,small_EDRK-rich_factor_2,C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	SERTAD2--DPY19L1	2	0	SERTAD2	3019	chr2:64880754:-	DPY19L1	13729	chr7:35058208:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	SERTAD2->SERTA_domain_containing_2,chr2:64858755-64978139:-,DPY19L1->chr7:34968488-35077883:-,dpy-19_like_1_(C._elegans)	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	TNKS--LPAR1	2	0	TNKS	9191	chr8:9473187:+	LPAR1	53981	chr9:113704448:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	TNKS->chr8:9413424-9639856:+,tankyrase,LPAR1->Oncogene{Bushman},chr9:113635543-113800981:-,lysophosphatidic_acid_receptor_1	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	TRIO--HSPA9	2	0	TRIO	36731	chr5:14406781:+	HSPA9	84116	chr5:137895780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	T3M10_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	C14orf142--LIMCH1	1	1	C14orf142	1186	chr14:93673254:-	LIMCH1	11867	chr4:41496553:+	ONLY_REF_SPLICE	NO	12	14	0.14	0.12	0.0148	0.0148	C14orf142->chr14:93669239-93673439:-,chromosome_14_open_reading_frame_142,LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+	T3M10_LUNG	0.12	0.14	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	MEGF9--C5	1	1	MEGF9	1713	chr9:123476036:-	C5	31293	chr9:123780130:-	ONLY_REF_SPLICE	YES	1	2	0.67	0.5	0.0148	0.0148	MEGF9->chr9:123363091-123476748:-,multiple_EGF_like_domains_9,C5->chr9:123714616-123812554:-,complement_component_5	T3M10_LUNG	0.5	0.67	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000813
T3M10_LUNG	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0148	0.0148	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	T3M10_LUNG	0.5	1	0.0296	FALSE	16	356	14	466	0	FALSE	ACH-000813
T3M10_LUNG	TNPO2--RTBDN	1	1	TNPO2	1763	chr19:12834063:-	RTBDN	21100	chr19:12945660:-	ONLY_REF_SPLICE	YES	0	8	1	0.2	0.0148	0.0148	TNPO2->chr19:12810008-12834825:-,transportin_2,RTBDN->chr19:12936292-12946242:-,retbindin	T3M10_LUNG	0.2	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000813
JHOC5_OVARY	ITCH--ASIP	1081	396	ITCH	16854	chr20:33050026:+	ASIP	36604	chr20:32850638:+	ONLY_REF_SPLICE	YES	210	0	0.88	1	10.8832	3.9868	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1|LUAD:1|LUSC:1|OV:1],LOCAL_REARRANGEMENT:+:[93891],ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,ASIP->agouti_signaling_protein,chr20:32782375-32857150:+	JHOC5_OVARY	0.88	1	14.87	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	CAPZB--OSBP2	787	31	CAPZB	1137	chr1:19811930:-	OSBP2	34624	chr22:31283413:+	ONLY_REF_SPLICE	YES	28	5	0.97	0.99	7.9233	0.3121	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,OSBP2->chr22:31089769-31303811:+,oxysterol_binding_protein_2	JHOC5_OVARY	0.97	0.99	8.2354	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	SIPA1L3--SPINT2	383	271	SIPA1L3	4162	chr19:38519796:+	SPINT2	42588	chr19:38774267:+	ONLY_REF_SPLICE	YES	56	3108	0.92	0.17	3.8559	2.7284	NEIGHBORS[35663],SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2	JHOC5_OVARY	0.17	0.92	6.5843	FALSE	0	1	0	2	0	FALSE	ACH-000324
JHOC5_OVARY	RP13-143G15.4--MAP7	155	1	RP13-143G15.4	1058	chr6:136546676:-	MAP7	16111	chr6:136742937:-	ONLY_REF_SPLICE	YES	0	13	1	0.92	1.5605	0.0101	RP13-143G15.4->chr6:136415853-136546733:-,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	JHOC5_OVARY	0.92	1	1.5706	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	MAP2K2--BEST2	138	56	MAP2K2	3704	chr19:4110507:-	BEST2	23272	chr19:12868465:+	ONLY_REF_SPLICE	YES	206	0	0.48	1	1.3893	0.5638	MAP2K2->ArcherDX_panel,FoundationOne_panel,chr19:4090319-4124126:-,mitogen-activated_protein_kinase_kinase_2,BEST2->bestrophin_2,chr19:12862516-12869272:+	JHOC5_OVARY	0.48	1	1.9531	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	CLTC--VMP1	113	64	CLTC	1316	chr17:57697534:+	VMP1	53132	chr17:57915656:+	ONLY_REF_SPLICE	YES	520	276	0.25	0.39	1.1377	0.6443	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	JHOC5_OVARY	0.25	0.39	1.782	FALSE	0	6	0	10	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-RNR2	80	6	MT-ND4	1947	chrM:11706:+	MT-RNR2	5392	chrM:1684:+	INCL_NON_REF_SPLICE	NO	15906	0	0.01	1	0.8054	0.0604	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0.01	1	0.8658	FALSE	13	19	3	21	0	FALSE	ACH-000324
JHOC5_OVARY	FAM69B--LRRC37A5P	71	22	FAM69B	2294	chr9:139612163:+	LRRC37A5P	12596	chr9:114371549:-	ONLY_REF_SPLICE	YES	12	1	0.89	0.99	0.7148	0.2215	FAM69B->chr9:139607022-139618502:+,family_with_sequence_similarity_69_member_B,LRRC37A5P->chr9:114353872-114393569:-,leucine-rich_repeat_containing_37_member_A5,_pseudogene	JHOC5_OVARY	0.89	0.99	0.9363	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	TIMM23B--LINC00843	63	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6343	0.1913	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHOC5_OVARY	1	1	0.8256	TRUE	508	994	45	981	0	FALSE	ACH-000324
JHOC5_OVARY	MT-TA--MT-TC	61	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6141	0.0705	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOC5_OVARY	1	1	0.6846	FALSE	462	80	0	856	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND6--MT-TE	42	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4228	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOC5_OVARY	1	1	0.4228	FALSE	499	1288	110	792	0	FALSE	ACH-000324
JHOC5_OVARY	SIPA1L3--SPINT2	2	144	SIPA1L3	3094	chr19:38423332:+	SPINT2	42588	chr19:38774267:+	ONLY_REF_SPLICE	YES	49	3108	0.75	0.04	0.0201	1.4498	NEIGHBORS[35663],SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2	JHOC5_OVARY	0.04	0.75	1.4699	FALSE	0	1	0	2	0	FALSE	ACH-000324
JHOC5_OVARY	CLIP1--ZCCHC8	31	22	CLIP1	28384	chr12:122794309:-	ZCCHC8	50372	chr12:122968110:-	ONLY_REF_SPLICE	YES	75	66	0.41	0.45	0.3121	0.2215	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[50238],CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-,ZCCHC8->chr12:122957417-122985518:-,zinc_finger_CCHC-type_containing_8	JHOC5_OVARY	0.41	0.45	0.5336	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	TIMM23--RP11-464F9.1	34	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	176	1	0.17	0.97	0.3423	0.0101	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JHOC5_OVARY	0.17	0.97	0.3524	TRUE	519	3926	326	965	0	FALSE	ACH-000324
JHOC5_OVARY	SIPA1L3--SPINT2	12	76	SIPA1L3	1131	chr19:38397998:+	SPINT2	42588	chr19:38774267:+	ONLY_REF_SPLICE	YES	20	3108	0.81	0.03	0.1208	0.7651	NEIGHBORS[35663],SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2	JHOC5_OVARY	0.03	0.81	0.8859	FALSE	0	1	0	3	0	FALSE	ACH-000324
JHOC5_OVARY	AP000525.9--LA16c-60G3.6	27	3	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	10	0	0.75	1	0.2718	0.0302	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	JHOC5_OVARY	0.75	1	0.302	TRUE	0	42	0	133	42	FALSE	ACH-000324
JHOC5_OVARY	AL589743.1--RP11-536C10.17	26	3	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	11	0	0.72	1	0.2618	0.0302	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	JHOC5_OVARY	0.72	1	0.292	TRUE	0	33	0	45	33	FALSE	ACH-000324
JHOC5_OVARY	RPA2--OPRD1	25	6	RPA2	3039	chr1:28233439:-	OPRD1	12322	chr1:29185466:+	ONLY_REF_SPLICE	YES	183	0	0.14	1	0.2517	0.0604	RPA2->Oncogene{Bushman},chr1:28218035-28241257:-,replication_protein_A2,OPRD1->chr1:29138654-29190208:+,opioid_receptor_delta_1	JHOC5_OVARY	0.14	1	0.3121	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	AL589743.1--RP11-536C10.17	22	12	AL589743.1	9393	chr14:19680685:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	133	0	0.2	1	0.2215	0.1208	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	JHOC5_OVARY	0.2	1	0.3423	TRUE	0	8	0	6	8	TRUE	ACH-000324
JHOC5_OVARY	AP000525.9--LA16c-60G3.6	22	12	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	55	0	0.38	1	0.2215	0.1208	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	JHOC5_OVARY	0.38	1	0.3423	TRUE	0	8	0	10	8	TRUE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	24	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	12761	4	0	0.86	0.2416	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	0.86	0.2517	FALSE	230	193	14	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO2	23	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	45	10	0.38	0.73	0.2316	0.0403	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHOC5_OVARY	0.38	0.73	0.2719	FALSE	59	21	0	114	0	FALSE	ACH-000324
JHOC5_OVARY	RP11-123O10.4--GRIP1	22	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2215	0.0604	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHOC5_OVARY	1	1	0.2819	FALSE	416	2512	207	587	0	FALSE	ACH-000324
JHOC5_OVARY	MT-TA--MT-TC	21	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2114	0.0705	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOC5_OVARY	1	1	0.2819	FALSE	462	80	0	856	0	FALSE	ACH-000324
JHOC5_OVARY	CTD-2314B22.3--RP11-536C10.19	20	9	CTD-2314B22.3	9273	chr14:19894700:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	148	0	0.16	1	0.2014	0.0906	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	JHOC5_OVARY	0.16	1	0.292	TRUE	0	1	0	4	1	TRUE	ACH-000324
JHOC5_OVARY	CTD-2314B22.3--RP11-536C10.19	21	2	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	7	0	0.77	1	0.2114	0.0201	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	JHOC5_OVARY	0.77	1	0.2315	TRUE	0	2	0	9	2	TRUE	ACH-000324
JHOC5_OVARY	MT-ND6--MT-TE	21	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2114	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOC5_OVARY	1	1	0.2114	FALSE	499	1288	110	792	0	FALSE	ACH-000324
JHOC5_OVARY	LIMK2--CDKL3	18	10	LIMK2	4834	chr22:31654412:+	CDKL3	41298	chr5:133541822:-	ONLY_REF_SPLICE	YES	34	0	0.45	1	0.1812	0.1007	LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+,CDKL3->chr5:133541305-133706738:-,cyclin_dependent_kinase_like_3	JHOC5_OVARY	0.45	1	0.2819	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	TTC39C--LAMA3	20	1	TTC39C	2885	chr18:21595002:+	LAMA3	63308	chr18:21437808:+	ONLY_REF_SPLICE	YES	30	39	0.41	0.35	0.2014	0.0101	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[37707],TTC39C->chr18:21572737-21715574:+,tetratricopeptide_repeat_domain_39C,LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3	JHOC5_OVARY	0.35	0.41	0.2115	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	64958	chr1:145351103:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	36627	chr1:145322772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	46078	chr1:145332223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	55504	chr1:145341649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	50784	chr1:145336929:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	60228	chr1:145346373:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	80682	chr1:145366827:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	69692	chr1:145355837:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	20	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	31909	chr1:145318054:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	CLTC--VMP1	1	74	CLTC	1316	chr17:57697534:+	VMP1	51426	chr17:57911373:+	ONLY_REF_SPLICE	YES	520	171	0.13	0.3	0.0101	0.745	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	JHOC5_OVARY	0.13	0.3	0.7551	FALSE	0	1	0	2	0	FALSE	ACH-000324
JHOC5_OVARY	RNF4--SH3BP2	18	6	RNF4	2916	chr4:2470985:+	SH3BP2	35322	chr4:2822341:+	ONLY_REF_SPLICE	YES	68	24	0.26	0.5	0.1812	0.0604	RNF4->chr4:2463947-2627047:+,ring_finger_protein_4,SH3BP2->Oncogene{Bushman},SH3_domain_binding_protein_2,chr4:2794750-2842825:+	JHOC5_OVARY	0.26	0.5	0.2416	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	SIPA1L3--SPINT2	6	54	SIPA1L3	4162	chr19:38519796:+	SPINT2	43759	chr19:38778516:+	ONLY_REF_SPLICE	YES	56	2876	0.52	0.02	0.0604	0.5437	NEIGHBORS[35663],SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2	JHOC5_OVARY	0.02	0.52	0.6041	FALSE	0	0	0	1	0	FALSE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	19	0	PPP1R15B	3300	chr1:204378620:-	NBPF10	27189	chr1:145313334:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1913	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.1913	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	MT-ND6--MT-TE	17	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.1712	0.0604	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOC5_OVARY	0.88	1	0.2316	FALSE	499	1288	110	792	0	FALSE	ACH-000324
JHOC5_OVARY	CLIP1--ZCCHC8	17	5	CLIP1	28384	chr12:122794309:-	ZCCHC8	51848	chr12:122966634:-	ONLY_REF_SPLICE	YES	75	112	0.23	0.16	0.1712	0.0503	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[50238],CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-,ZCCHC8->chr12:122957417-122985518:-,zinc_finger_CCHC-type_containing_8	JHOC5_OVARY	0.16	0.23	0.2215	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	MT-ND3--MT-ATP8	18	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1812	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	1	1	0.1812	FALSE	351	233	23	137	0	FALSE	ACH-000324
JHOC5_OVARY	CLTC--VMP1	1	66	CLTC	11875	chr17:57741355:+	VMP1	53132	chr17:57915656:+	ONLY_REF_SPLICE	YES	343	276	0.16	0.2	0.0101	0.6645	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	JHOC5_OVARY	0.16	0.2	0.6746	FALSE	0	0	0	1	0	FALSE	ACH-000324
JHOC5_OVARY	CLTC--VMP1	1	65	CLTC	5948	chr17:57728677:+	VMP1	53132	chr17:57915656:+	ONLY_REF_SPLICE	YES	428	276	0.13	0.19	0.0101	0.6544	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	JHOC5_OVARY	0.13	0.19	0.6645	FALSE	0	0	0	2	0	FALSE	ACH-000324
JHOC5_OVARY	C15orf57--CBX3	14	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	35	36	0.42	0.41	0.1409	0.1107	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JHOC5_OVARY	0.41	0.42	0.2516	TRUE	267	562	48	632	0	FALSE	ACH-000324
JHOC5_OVARY	HSP90AB1--MT-RNR2	16	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3742	0	0	1	0.1611	0.0201	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0	1	0.1812	FALSE	13	9	0	364	0	FALSE	ACH-000324
JHOC5_OVARY	ZNF654--HMGB2	16	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1611	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JHOC5_OVARY	1	1	0.1611	TRUE	0	0	0	518	0	FALSE	ACH-000324
JHOC5_OVARY	LIMK2--CDKL3	12	13	LIMK2	6485	chr22:31656063:+	CDKL3	41298	chr5:133541822:-	ONLY_REF_SPLICE	YES	47	0	0.35	1	0.1208	0.1309	LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+,CDKL3->chr5:133541305-133706738:-,cyclin_dependent_kinase_like_3	JHOC5_OVARY	0.35	1	0.2517	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	MT-CO2--MT-CO1	13	8	MT-CO2	1282	chrM:7867:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	13	24390	0.62	0	0.1309	0.0805	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0.62	0.2114	FALSE	36	10	0	27	0	FALSE	ACH-000324
JHOC5_OVARY	CHMP6--RPTOR	13	6	CHMP6	4897	chr17:78971141:+	RPTOR	49307	chr17:78931424:+	ONLY_REF_SPLICE	YES	83	46	0.19	0.29	0.1309	0.0604	LOCAL_REARRANGEMENT:+:[25227],CHMP6->charged_multivesicular_body_protein_6,chr17:78965398-78983317:+,RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1	JHOC5_OVARY	0.19	0.29	0.1913	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	CLIP1--ZCCHC8	12	9	CLIP1	28384	chr12:122794309:-	ZCCHC8	51240	chr12:122967242:-	ONLY_REF_SPLICE	YES	75	85	0.22	0.2	0.1208	0.0906	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[50238],CLIP1->CAP-Gly_domain_containing_linker_protein_1,chr12:122755979-122907179:-,ZCCHC8->chr12:122957417-122985518:-,zinc_finger_CCHC-type_containing_8	JHOC5_OVARY	0.2	0.22	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	13	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	16333	0	0	1	0.1309	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	1	0.151	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO1	12	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9586	27182	0	0	0.1208	0.0201	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0	0.1409	FALSE	183	104	9	328	0	FALSE	ACH-000324
JHOC5_OVARY	PTGR1--FAM69B	10	9	PTGR1	2633	chr9:114359597:-	FAM69B	20077	chr9:139612029:+	ONLY_REF_SPLICE	YES	93	9	0.17	0.68	0.1007	0.0906	PTGR1->chr9:114312002-114362135:-,prostaglandin_reductase_1,FAM69B->chr9:139607022-139618502:+,family_with_sequence_similarity_69_member_B	JHOC5_OVARY	0.17	0.68	0.1913	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-RNR2	12	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1208	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	1	1	0.1208	FALSE	63	17	1	58	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	11	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	16216	0	0	1	0.1107	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	1	0.1308	FALSE	231	205	14	283	0	FALSE	ACH-000324
JHOC5_OVARY	RP11-96H19.1--RP11-446N19.1	9	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0906	0.0705	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHOC5_OVARY	0.94	1	0.1611	FALSE	515	4851	409	746	0	FALSE	ACH-000324
JHOC5_OVARY	MT-TA--MT-TC	10	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1007	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOC5_OVARY	1	1	0.1007	FALSE	462	80	0	856	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND6--MT-TE	8	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0805	0.0705	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOC5_OVARY	0.94	1	0.151	FALSE	499	1288	110	792	0	FALSE	ACH-000324
JHOC5_OVARY	HSP90AB1--MT-RNR2	9	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3744	0	0	1	0.0906	0.0201	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0	1	0.1107	FALSE	13	9	0	364	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	9	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14884	6	0	0.65	0.0906	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	0.65	0.1107	FALSE	231	205	14	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	9	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12664	6	0	0.62	0.0906	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	0.62	0.1007	FALSE	230	198	14	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-TA--MT-TC	7	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0705	0.0906	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOC5_OVARY	1	1	0.1611	FALSE	462	80	0	856	0	FALSE	ACH-000324
JHOC5_OVARY	CAPZB--OSBP2	1	32	CAPZB	2383	chr1:19810684:-	OSBP2	34624	chr22:31283413:+	ONLY_REF_SPLICE	YES	90	5	0.27	0.87	0.0101	0.3222	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,OSBP2->chr22:31089769-31303811:+,oxysterol_binding_protein_2	JHOC5_OVARY	0.27	0.87	0.3323	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO1	9	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0906	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	1	1	0.0906	FALSE	183	104	9	328	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	9	0	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0906	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	1	1	0.0906	FALSE	230	193	14	283	0	FALSE	ACH-000324
JHOC5_OVARY	WNK1--ERC1	8	4	WNK1	9049	chr12:966415:+	ERC1	70311	chr12:1480999:+	ONLY_REF_SPLICE	YES	81	51	0.13	0.19	0.0805	0.0403	{Klijn_CCL:Stomach=1,Kidney=1,Head-Neck=1},NEIGHBORS[79057],WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	JHOC5_OVARY	0.13	0.19	0.1208	FALSE	0	0	0	1	0	FALSE	ACH-000324
JHOC5_OVARY	RP11-6N13.1--CTD-2374C24.1	8	3	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0805	0.0302	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	JHOC5_OVARY	0.92	1	0.1107	TRUE	5	4	0	46	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	6	10	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2537	28	0.01	0.36	0.0604	0.1007	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0.01	0.36	0.1611	FALSE	216	209	16	281	0	FALSE	ACH-000324
JHOC5_OVARY	NRIP1--AF127936.7	8	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.64	1	0.0805	0.0101	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHOC5_OVARY	0.64	1	0.0906	FALSE	292	1546	117	613	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO1	7	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10913	27153	0	0	0.0705	0.0302	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0	0.1007	FALSE	183	104	9	328	0	FALSE	ACH-000324
JHOC5_OVARY	MT-CO2--MT-CO1	6	7	MT-CO2	1225	chrM:7810:+	MT-CO1	5252	chrM:6471:+	INCL_NON_REF_SPLICE	NO	14	24779	0.48	0	0.0604	0.0705	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0.48	0.1309	FALSE	36	10	0	27	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	7	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15391	6	0	0.62	0.0705	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	0.62	0.1007	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	WNK1--ERC1	6	7	WNK1	10269	chr12:968630:+	ERC1	70311	chr12:1480999:+	ONLY_REF_SPLICE	YES	70	51	0.16	0.2	0.0604	0.0705	{Klijn_CCL:Stomach=1,Kidney=1,Head-Neck=1},NEIGHBORS[79057],WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	JHOC5_OVARY	0.16	0.2	0.1309	FALSE	0	0	0	1	0	FALSE	ACH-000324
JHOC5_OVARY	CLTC--VMP1	1	26	CLTC	5948	chr17:57728677:+	VMP1	54605	chr17:57917129:+	ONLY_REF_SPLICE	YES	428	399	0.06	0.06	0.0101	0.2618	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	JHOC5_OVARY	0.06	0.06	0.2719	FALSE	0	0	0	1	0	FALSE	ACH-000324
JHOC5_OVARY	FAM69B--LRRC37A5P	7	2	FAM69B	2294	chr9:139612163:+	LRRC37A5P	14612	chr9:114365405:-	INCL_NON_REF_SPLICE	YES	12	7	0.43	0.56	0.0705	0.0201	FAM69B->chr9:139607022-139618502:+,family_with_sequence_similarity_69_member_B,LRRC37A5P->chr9:114353872-114393569:-,leucine-rich_repeat_containing_37_member_A5,_pseudogene	JHOC5_OVARY	0.43	0.56	0.0906	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	MT-CO2--MT-CO1	3	18	MT-CO2	1463	chrM:8048:+	MT-CO1	5176	chrM:6395:+	INCL_NON_REF_SPLICE	NO	5	25114	0.81	0	0.0302	0.1812	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0.81	0.2114	FALSE	36	10	0	27	0	FALSE	ACH-000324
JHOC5_OVARY	MT-CO2--MT-CO1	4	14	MT-CO2	1334	chrM:7919:+	MT-CO1	5308	chrM:6527:+	INCL_NON_REF_SPLICE	YES	13	24829	0.58	0	0.0403	0.1409	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0.58	0.1812	FALSE	36	10	0	27	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	6	6	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	15336	0	0	1	0.0604	0.0604	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	1	0.1208	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	CLTC--VMP1	1	25	CLTC	4540	chr17:57725762:+	VMP1	54605	chr17:57917129:+	ONLY_REF_SPLICE	NO	236	399	0.1	0.06	0.0101	0.2517	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	JHOC5_OVARY	0.06	0.1	0.2618	FALSE	0	0	0	1	0	FALSE	ACH-000324
JHOC5_OVARY	B3GNTL1--TCF7L1	7	0	B3GNTL1	1074	chr17:81009613:-	TCF7L1	38563	chr2:85534765:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0705	0	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,TCF7L1->chr2:85360533-85537511:+,transcription_factor_7_like_1	JHOC5_OVARY	1	1	0.0705	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	C15orf57--CBX3	5	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	35	45	0.27	0.22	0.0503	0.0805	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JHOC5_OVARY	0.22	0.27	0.1308	TRUE	267	562	48	632	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	6	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14880	28	0	0.26	0.0604	0.0403	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	0.26	0.1007	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	7	0	PPP1R15B	5354	chr1:204374388:-	NBPF10	50784	chr1:145336929:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0705	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0705	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	MT-CO2--MT-CO1	3	15	MT-CO2	1549	chrM:8134:+	MT-CO1	5339	chrM:6558:+	INCL_NON_REF_SPLICE	NO	0	27372	1	0	0.0302	0.151	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	1	0.1812	FALSE	36	10	0	27	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	4	11	MT-ND4	2250	chrM:12009:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	2537	4	0.01	0.79	0.0403	0.1107	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0.01	0.79	0.151	FALSE	216	209	16	281	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	4	10	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5097	28	0	0.33	0.0403	0.1007	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	0.33	0.141	FALSE	218	210	16	281	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	5	6	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	15405	0	0	1	0.0503	0.0604	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	1	0.1107	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND6--MT-TE	3	14	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0302	0.1409	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOC5_OVARY	0.94	1	0.1711	FALSE	499	1288	110	792	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO1	5	5	MT-ATP6	1516	chrM:9042:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	NO	4970	27503	0	0	0.0503	0.0503	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0	0.1006	FALSE	183	104	9	328	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO2	6	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	35	11	0.17	0.39	0.0604	0.0101	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHOC5_OVARY	0.17	0.39	0.0705	FALSE	59	21	0	114	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	6	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12646	6	0	0.54	0.0604	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	0.54	0.0705	FALSE	230	193	14	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-RNR2	6	1	MT-ND4	1212	chrM:10971:+	MT-RNR2	5959	chrM:2251:+	INCL_NON_REF_SPLICE	YES	12743	9071	0	0	0.0604	0.0101	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0	0	0.0705	FALSE	13	19	3	21	0	FALSE	ACH-000324
JHOC5_OVARY	RP11-307P5.1--SASH1	5	5	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	6	1	0.62	0.0503	0.0503	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	JHOC5_OVARY	0.62	1	0.1006	TRUE	0	2	0	37	2	FALSE	ACH-000324
JHOC5_OVARY	HSPBP1--GRK5	6	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	JHOC5_OVARY	1	1	0.0604	TRUE	1	39	0	134	39	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-RNR2	6	0	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	1	1	0.0604	FALSE	63	17	1	58	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	4	8	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14517	28	0	0.3	0.0403	0.0805	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	0.3	0.1208	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	6	0	MT-ND4	1112	chrM:10871:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	1	1	0.0604	FALSE	230	193	14	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	5	4	MT-ND4	1528	chrM:11287:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	NO	18355	0	0	1	0.0503	0.0403	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	1	0.0906	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND6--MT-TE	6	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOC5_OVARY	1	1	0.0604	FALSE	499	1288	110	792	0	FALSE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	6	0	PPP1R15B	5354	chr1:204374388:-	NBPF10	46078	chr1:145332223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	6	0	PPP1R15B	5354	chr1:204374388:-	NBPF10	27189	chr1:145313334:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	6	0	PPP1R15B	5354	chr1:204374388:-	NBPF10	36627	chr1:145322772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	6	0	PPP1R15B	5354	chr1:204374388:-	NBPF10	31909	chr1:145318054:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	RP11-96H19.1--RP11-446N19.1	3	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0302	0.1208	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHOC5_OVARY	0.94	1	0.151	FALSE	275	511	55	178	0	FALSE	ACH-000324
JHOC5_OVARY	RP11-96H19.1--RP11-446N19.1	3	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0302	0.1208	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHOC5_OVARY	0.94	1	0.151	FALSE	407	2205	196	549	0	FALSE	ACH-000324
JHOC5_OVARY	SPP1--MTATP6P1	6	0	SPP1	6793	chr4:88903711:+	MTATP6P1	10956	chr1:569387:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	JHOC5_OVARY	1	1	0.0604	TRUE	0	0	0	3	0	TRUE	ACH-000324
JHOC5_OVARY	ATF2--CHN1	5	3	ATF2	17534	chr2:175945388:-	CHN1	43062	chr2:175666540:-	ONLY_REF_SPLICE	YES	97	59	0.08	0.12	0.0503	0.0302	NEIGHBORS[66881],ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-,CHN1->Oncogene{Bushman},chimerin_1,chr2:175664091-175870097:-	JHOC5_OVARY	0.08	0.12	0.0805	FALSE	0	0	0	1	0	FALSE	ACH-000324
JHOC5_OVARY	FAM69B--LRRC37A5P	5	2	FAM69B	2294	chr9:139612163:+	LRRC37A5P	14624	chr9:114365393:-	ONLY_REF_SPLICE	YES	12	8	0.37	0.47	0.0503	0.0201	FAM69B->chr9:139607022-139618502:+,family_with_sequence_similarity_69_member_B,LRRC37A5P->chr9:114353872-114393569:-,leucine-rich_repeat_containing_37_member_A5,_pseudogene	JHOC5_OVARY	0.37	0.47	0.0704	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO2	5	2	MT-ATP6	1620	chrM:9146:+	MT-CO2	5236	chrM:8140:+	INCL_NON_REF_SPLICE	NO	0	1	1	0.88	0.0503	0.0201	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHOC5_OVARY	0.88	1	0.0704	FALSE	59	21	0	114	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO2	4	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	45	8	0.18	0.56	0.0403	0.0604	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHOC5_OVARY	0.18	0.56	0.1007	FALSE	59	21	0	114	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-RNR2	5	2	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	10113	9338	0	0	0.0503	0.0201	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0	0	0.0704	FALSE	63	17	1	58	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	5	2	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	18005	146	0	0.05	0.0503	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	0.05	0.0704	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	RP11-96H19.1--RP11-446N19.1	3	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0302	0.1007	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHOC5_OVARY	0.93	1	0.1309	FALSE	467	2173	244	435	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO2	5	1	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	35	11	0.15	0.35	0.0503	0.0101	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHOC5_OVARY	0.15	0.35	0.0604	FALSE	59	21	0	114	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	10139	9354	0	0	0.0503	0.0101	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0	0	0.0604	FALSE	63	17	1	58	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	5	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12859	28	0	0.18	0.0503	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	0.18	0.0604	FALSE	230	198	14	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	4	5	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	15026	0	0	1	0.0403	0.0503	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	1	0.0906	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO1	4	4	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	10018	0	0	1	0.0403	0.0403	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	1	0.0806	FALSE	182	97	9	327	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1111	chrM:8637:+	MT-RNR2	5402	chrM:2391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	1	1	0.0503	FALSE	63	17	1	58	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	3	8	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	14808	0	0	1	0.0302	0.0805	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	1	0.1107	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	3	8	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	14894	0	0	1	0.0302	0.0805	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	1	0.1107	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	4	4	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	15401	1480	0	0.01	0.0403	0.0403	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	0.01	0.0806	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	3	8	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	14517	146	0	0.07	0.0302	0.0805	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	0.07	0.1107	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHOC5_OVARY	1	1	0.0503	FALSE	0	0	0	189	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO1	4	3	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	10835	25389	0	0	0.0403	0.0302	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0	0.0705	FALSE	183	104	9	328	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO2	4	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	41	8	0.15	0.47	0.0403	0.0302	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	JHOC5_OVARY	0.15	0.47	0.0705	FALSE	59	21	0	114	0	FALSE	ACH-000324
JHOC5_OVARY	MT-CO2--MT-CO1	3	7	MT-CO2	1256	chrM:7841:+	MT-CO1	5313	chrM:6532:+	INCL_NON_REF_SPLICE	YES	15	25255	0.4	0	0.0302	0.0705	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0.4	0.1007	FALSE	36	10	0	27	0	FALSE	ACH-000324
JHOC5_OVARY	MT-CO2--MT-CO1	3	7	MT-CO2	1242	chrM:7827:+	MT-CO1	5225	chrM:6444:+	INCL_NON_REF_SPLICE	YES	15	25344	0.4	0	0.0302	0.0705	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0.4	0.1007	FALSE	36	10	0	27	0	FALSE	ACH-000324
JHOC5_OVARY	MT-TA--MT-TC	4	3	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0.0302	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHOC5_OVARY	1	1	0.0705	FALSE	462	80	0	856	0	FALSE	ACH-000324
JHOC5_OVARY	RP11-96H19.1--RP11-446N19.1	1	15	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.94	1	0.0101	0.151	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHOC5_OVARY	0.94	1	0.1611	FALSE	192	492	57	212	0	FALSE	ACH-000324
JHOC5_OVARY	AC027119.1--AC026167.1	4	2	AC027119.1	1674	chr3:6005202:+	AC026167.1	6915	chr3:6400588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0403	0.0201	NEIGHBORS[24364],AC027119.1->chr3:6004529-6165807:+,AC026167.1->chr3:6190171-6407572:+	JHOC5_OVARY	1	1	0.0604	FALSE	1	37	1	9	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO1	3	6	MT-ATP6	1543	chrM:9069:+	MT-CO1	5325	chrM:6547:+	INCL_NON_REF_SPLICE	NO	3327	27262	0	0	0.0302	0.0604	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0	0.0906	FALSE	183	104	9	328	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	4	2	MT-ND4	1314	chrM:11073:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	16793	0	0	1	0.0403	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	1	0.0604	FALSE	231	205	14	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	4	2	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	16851	1480	0	0	0.0403	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	0	0.0604	FALSE	231	205	14	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	4	2	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	17808	733	0	0.01	0.0403	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	0.01	0.0604	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-RNR2	4	2	MT-ND4	1783	chrM:11542:+	MT-RNR2	5845	chrM:2137:+	INCL_NON_REF_SPLICE	YES	15441	9674	0	0	0.0403	0.0201	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0	0	0.0604	FALSE	13	19	3	21	0	FALSE	ACH-000324
JHOC5_OVARY	ALDOA--MT-ND4	4	1	ALDOA	9161	chr16:30078933:+	MT-ND4	15475	chrM:11228:+	INCL_NON_REF_SPLICE	YES	2686	16007	0	0	0.0403	0.0101	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	JHOC5_OVARY	0	0	0.0504	FALSE	0	0	0	6	0	FALSE	ACH-000324
JHOC5_OVARY	FTH1--ACTB	4	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	7005	3	0	0.62	0.0403	0.0101	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	JHOC5_OVARY	0	0.62	0.0504	FALSE	1	0	0	97	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	9606	24747	0	0	0.0403	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0	0.0504	FALSE	183	104	9	328	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5226	chrM:6448:+	INCL_NON_REF_SPLICE	YES	9606	25501	0	0	0.0403	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0	0.0504	FALSE	183	104	9	328	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	3	5	MT-ND4	1756	chrM:11515:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	14897	0	0	1	0.0302	0.0503	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	1	0.0805	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-RNR2	4	1	MT-ND4	1201	chrM:10960:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	12608	0	0	1	0.0403	0.0101	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0	1	0.0504	FALSE	13	19	3	21	0	FALSE	ACH-000324
JHOC5_OVARY	RP11-15B17.1--MT-ATP8	4	1	RP11-15B17.1	1238	chr4:100871400:+	MT-ATP8	12279	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.45	0.0403	0.0101	RP11-15B17.1->chr4:100871163-101116256:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0.45	1	0.0504	FALSE	0	0	0	5	0	FALSE	ACH-000324
JHOC5_OVARY	RP11-403B2.7--RP11-403B2.6	3	5	RP11-403B2.7	1254	chr15:20961259:-	RP11-403B2.6	7754	chr15:20965236:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0.0503	GTEx_FI:{Brain=[count:17=pct:2.6],Esophagus=[count:15=pct:3.7],Blood_Vessel=[count:8=pct:2.2],Skin=[count:7=pct:2.2],Thyroid=[count:5=pct:2.8],Prostate=[count:4=pct:6.6],Lung=[count:4=pct:2.4],Heart=[count:3=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Blood=[count:2=pct:1.1],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},LOCAL_REARRANGEMENT:-:[3128],RP11-403B2.7->chr15:20935076-20961512:-,RP11-403B2.6->chr15:20964640-20980123:-	JHOC5_OVARY	1	1	0.0805	TRUE	22	66	5	11	0	FALSE	ACH-000324
JHOC5_OVARY	CAPZB--OSBP2	1	12	CAPZB	1137	chr1:19811930:-	OSBP2	35421	chr22:31284210:+	ONLY_REF_SPLICE	YES	28	146	0.32	0.08	0.0101	0.1208	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,OSBP2->chr22:31089769-31303811:+,oxysterol_binding_protein_2	JHOC5_OVARY	0.08	0.32	0.1309	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	FTH1--ACTB	4	0	FTH1	1259	chr11:61734874:-	ACTB	11619	chr7:5570204:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	JHOC5_OVARY	1	1	0.0403	TRUE	1	0	0	97	0	FALSE	ACH-000324
JHOC5_OVARY	HSPA1B--RALB	4	0	HSPA1B	3019	chr6:31797530:+	RALB	9589	chr2:121036223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	HSPA1B->chr6:31795512-31798031:+,heat_shock_protein_family_A_(Hsp70)_member_1B,RALB->Oncogene{Bushman},chr2:120997640-121052289:+,v-ral_simian_leukemia_viral_oncogene_homolog_B	JHOC5_OVARY	1	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	1	1	0.0403	FALSE	63	17	1	58	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1123	chrM:8649:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	1	1	0.0403	FALSE	63	17	1	58	0	FALSE	ACH-000324
JHOC5_OVARY	MT-CO2--MT-CO1	3	4	MT-CO2	1129	chrM:7714:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7	27172	0.5	0	0.0302	0.0403	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0.5	0.0705	FALSE	36	10	0	27	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	15396	1693	0	0	0.0302	0.0403	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	0	0.0705	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-RNR2	3	4	MT-ND4	1824	chrM:11583:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	14718	0	0	1	0.0302	0.0403	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0	1	0.0705	FALSE	13	19	3	21	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-RNR2	3	4	MT-ND4	1843	chrM:11602:+	MT-RNR2	5709	chrM:2001:+	INCL_NON_REF_SPLICE	NO	15187	10130	0	0	0.0302	0.0403	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0	0	0.0705	FALSE	13	19	3	21	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOC5_OVARY	1	1	0.0403	FALSE	499	1288	110	792	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND6--MT-TE	3	4	MT-ND6	1149	chrM:14525:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0302	0.0403	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOC5_OVARY	0.88	1	0.0705	FALSE	499	1288	110	792	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHOC5_OVARY	1	1	0.0403	FALSE	499	1288	110	792	0	FALSE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	4	0	PPP1R15B	4392	chr1:204375350:-	NBPF10	50784	chr1:145336929:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO1	3	3	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	9634	25317	0	0	0.0302	0.0302	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0	0.0604	FALSE	183	104	9	328	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO1	3	3	MT-ATP6	1174	chrM:8700:+	MT-CO1	5204	chrM:6426:+	INCL_NON_REF_SPLICE	YES	11857	24714	0	0	0.0302	0.0302	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0	0.0604	FALSE	183	104	9	328	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO1	3	3	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	10292	25429	0	0	0.0302	0.0302	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0	0.0604	FALSE	183	104	9	328	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1181	chrM:8707:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	11735	0	0	1	0.0302	0.0302	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0	1	0.0604	FALSE	63	17	1	58	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1158	chrM:8684:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	10914	9717	0	0	0.0302	0.0201	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0	0	0.0503	FALSE	63	17	1	58	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1477	chrM:11236:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	16374	486	0	0.01	0.0302	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	0.01	0.0503	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	16642	0	0	1	0.0302	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	1	0.0503	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	16296	0	0	1	0.0302	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	1	0.0503	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	16336	0	0	1	0.0302	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	1	0.0503	FALSE	231	217	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	17067	0	0	1	0.0302	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	1	0.0503	FALSE	231	216	16	283	0	FALSE	ACH-000324
JHOC5_OVARY	CHD2--RP11-159D12.5	3	1	CHD2	6529	chr15:93444529:+	RP11-159D12.5	60062	chr17:56082402:-	INCL_NON_REF_SPLICE	YES	97	162	0.04	0.02	0.0302	0.0101	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,RP11-159D12.5->chr17:56066399-56082614:-	JHOC5_OVARY	0.02	0.04	0.0403	TRUE	0	0	0	1	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1130	chrM:8656:+	MT-CO1	5625	chrM:6847:+	INCL_NON_REF_SPLICE	YES	9612	28897	0	0	0.0302	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0	0.0403	FALSE	183	104	9	328	0	FALSE	ACH-000324
JHOC5_OVARY	MT-CO2--MT-CO1	3	1	MT-CO2	1396	chrM:7981:+	MT-CO1	5908	chrM:7127:+	INCL_NON_REF_SPLICE	YES	11	842	0.27	0	0.0302	0.0101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	0	0.27	0.0403	FALSE	36	10	0	27	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1129	chrM:10888:+	MT-ATP8	5468	chrM:8455:+	INCL_NON_REF_SPLICE	YES	9335	0	0	1	0.0302	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	0	1	0.0403	FALSE	230	193	14	283	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-RNR2	3	1	MT-ND4	1237	chrM:10996:+	MT-RNR2	5426	chrM:1718:+	INCL_NON_REF_SPLICE	YES	13105	0	0	1	0.0302	0.0101	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0	1	0.0403	FALSE	13	19	3	21	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-RNR2	3	1	MT-ND4	1222	chrM:10981:+	MT-RNR2	5970	chrM:2262:+	INCL_NON_REF_SPLICE	YES	12897	9252	0	0	0.0302	0.0101	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0	0	0.0403	FALSE	13	19	3	21	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-RNR2	3	1	MT-ND4	1235	chrM:10994:+	MT-RNR2	5914	chrM:2206:+	INCL_NON_REF_SPLICE	YES	13133	8995	0	0	0.0302	0.0101	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0	0	0.0403	FALSE	13	19	3	21	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-RNR2	3	1	MT-ND4	1209	chrM:10968:+	MT-RNR2	5415	chrM:1707:+	INCL_NON_REF_SPLICE	NO	12725	0	0	1	0.0302	0.0101	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0	1	0.0403	FALSE	13	19	3	21	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-RNR2	3	1	MT-ND4	1195	chrM:10954:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	11961	0	0	1	0.0302	0.0101	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0	1	0.0403	FALSE	13	19	3	21	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-RNR2	3	1	MT-ND4	1261	chrM:11020:+	MT-RNR2	5926	chrM:2218:+	INCL_NON_REF_SPLICE	YES	14179	9940	0	0	0.0302	0.0101	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	0	0	0.0403	FALSE	13	19	3	21	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	1	1	0.0302	FALSE	183	104	9	328	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1125	chrM:8651:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	1	1	0.0302	FALSE	63	17	1	58	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5851	chrM:2840:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHOC5_OVARY	1	1	0.0302	FALSE	62	15	1	57	0	FALSE	ACH-000324
JHOC5_OVARY	MT-CO2--MT-CO1	3	0	MT-CO2	1282	chrM:7867:+	MT-CO1	6186	chrM:7405:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHOC5_OVARY	1	1	0.0302	FALSE	36	10	0	27	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND3--MT-ATP8	3	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	1	1	0.0302	FALSE	351	233	23	137	0	FALSE	ACH-000324
JHOC5_OVARY	MT-ND4--MT-ATP8	3	0	MT-ND4	1017	chrM:10776:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHOC5_OVARY	1	1	0.0302	FALSE	230	190	14	283	0	FALSE	ACH-000324
JHOC5_OVARY	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	24	0	0.2	1	0.0201	0.0403	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHOC5_OVARY	0.2	1	0.0604	FALSE	164	806	69	479	0	FALSE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4392	chr1:204375350:-	NBPF10	27189	chr1:145313334:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4392	chr1:204375350:-	NBPF10	36627	chr1:145322772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	55503	chr1:145341648:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	64957	chr1:145351102:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	27188	chr1:145313333:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4392	chr1:204375350:-	NBPF10	46078	chr1:145332223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	46077	chr1:145332222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	31908	chr1:145318053:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4392	chr1:204375350:-	NBPF10	31909	chr1:145318054:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	36626	chr1:145322771:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	60227	chr1:145346372:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	80681	chr1:145366826:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	50783	chr1:145336928:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PPP1R15B--NBPF10	3	0	PPP1R15B	4517	chr1:204375225:-	NBPF10	69691	chr1:145355836:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	PPP1R15B->chr1:204372515-204380919:-,protein_phosphatase_1_regulatory_subunit_15B,NBPF10->chr1:145289772-145370303:+,neuroblastoma_breakpoint_family_member_10	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	ZNF654--HMGB2	3	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JHOC5_OVARY	1	1	0.0302	TRUE	0	0	0	518	0	FALSE	ACH-000324
JHOC5_OVARY	FAM69B--LRRC37A5P	2	3	FAM69B	1159	chr9:139607180:+	LRRC37A5P	12596	chr9:114371549:-	ONLY_REF_SPLICE	YES	9	1	0.36	0.83	0.0201	0.0302	FAM69B->chr9:139607022-139618502:+,family_with_sequence_similarity_69_member_B,LRRC37A5P->chr9:114353872-114393569:-,leucine-rich_repeat_containing_37_member_A5,_pseudogene	JHOC5_OVARY	0.36	0.83	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	PGF--TMED10	1	6	PGF	2881	chr14:75420607:-	TMED10	15049	chr14:75618846:-	ONLY_REF_SPLICE	YES	1	1047	0.88	0.01	0.0101	0.0604	PGF->Oncogene{Bushman},chr14:75408537-75422487:-,placental_growth_factor,TMED10->chr14:75598173-75643334:-,transmembrane_p24_trafficking_protein_10	JHOC5_OVARY	0.01	0.88	0.0705	FALSE	0	0	0	1	0	FALSE	ACH-000324
JHOC5_OVARY	RP11-6N13.1--CTD-2374C24.1	2	2	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0201	0.0201	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	JHOC5_OVARY	0.8	1	0.0402	TRUE	5	12	0	42	0	FALSE	ACH-000324
JHOC5_OVARY	YWHAE--CRK	2	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1461	121	0	0.03	0.0201	0.0201	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	JHOC5_OVARY	0	0.03	0.0402	FALSE	6	50	7	115	0	FALSE	ACH-000324
JHOC5_OVARY	RP13-143G15.4--MAP7	2	1	RP13-143G15.4	1058	chr6:136546676:-	MAP7	18288	chr6:136710655:-	ONLY_REF_SPLICE	YES	0	75	1	0.04	0.0201	0.0101	RP13-143G15.4->chr6:136415853-136546733:-,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	JHOC5_OVARY	0.04	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	CCDC122--ENOX1	2	0	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	JHOC5_OVARY	1	1	0.0201	FALSE	39	52	2	34	0	FALSE	ACH-000324
JHOC5_OVARY	CKMT2-AS1--XRCC4	2	0	CKMT2-AS1	1274	chr5:80597106:-	XRCC4	23807	chr5:82554349:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CKMT2-AS1->CKMT2_antisense_RNA_1,chr5:80499903-80597379:-,XRCC4->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_4,chr5:82373317-82649606:+	JHOC5_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	EIF3K--CNTN4-AS2	2	0	EIF3K	8562	chr19:39123136:+	CNTN4-AS2	15898	chr3:2174134:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	EIF3K->chr19:39109735-39127595:+,eukaryotic_translation_initiation_factor_3_subunit_K,CNTN4-AS2->CNTN4_antisense_RNA_2,chr3:2152093-2185925:-	JHOC5_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	MB21D2--FGF12	2	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	JHOC5_OVARY	1	1	0.0201	FALSE	0	17	0	46	0	FALSE	ACH-000324
JHOC5_OVARY	NRIP1--AF127936.7	1	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	21	0	0.19	1	0.0101	0.0403	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHOC5_OVARY	0.19	1	0.0504	FALSE	125	705	46	456	0	FALSE	ACH-000324
JHOC5_OVARY	NUDT1--HACE1	2	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	JHOC5_OVARY	1	1	0.0201	TRUE	1	20	0	20	17	FALSE	ACH-000324
JHOC5_OVARY	NUP93--CES1P2	2	0	NUP93	1107	chr16:56764123:+	CES1P2	40652	chr16:55783473:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NUP93->ArcherDX_panel,FoundationOne_panel,chr16:56764017-56878797:+,nucleoporin_93kDa,CES1P2->carboxylesterase_1_pseudogene_2,chr16:55762027-55784023:+	JHOC5_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	USP42--ANXA1	2	0	USP42	4177	chr7:6155154:+	ANXA1	30950	chr9:75773438:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	USP42->chr7:6144515-6201195:+,ubiquitin_specific_peptidase_42,ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+	JHOC5_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	ASAP2--RP11-521D12.1	1	3	ASAP2	3685	chr2:9437574:+	RP11-521D12.1	35968	chr2:9781493:+	ONLY_REF_SPLICE	YES	42	0	0.09	1	0.0101	0.0302	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,RP11-521D12.1->chr2:9778901-9789568:+	JHOC5_OVARY	0.09	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	3	1	0.57	0.0101	0.0302	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHOC5_OVARY	0.57	1	0.0403	FALSE	93	270	15	244	0	FALSE	ACH-000324
JHOC5_OVARY	RP11-307P5.1--SASH1	1	3	RP11-307P5.1	4371	chr6:148054947:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	23	6	0.15	0.4	0.0101	0.0302	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	JHOC5_OVARY	0.15	0.4	0.0403	TRUE	0	0	0	11	0	TRUE	ACH-000324
JHOC5_OVARY	ASAP2--RP11-521D12.1	1	2	ASAP2	3685	chr2:9437574:+	RP11-521D12.1	37062	chr2:9788981:+	ONLY_REF_SPLICE	NO	42	0	0.07	1	0.0101	0.0201	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,RP11-521D12.1->chr2:9778901-9789568:+	JHOC5_OVARY	0.07	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	FGFR2--COL14A1	1	2	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	11	1	0.21	0.75	0.0101	0.0201	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	JHOC5_OVARY	0.21	0.75	0.0302	TRUE	0	0	0	32	0	FALSE	ACH-000324
JHOC5_OVARY	WNK1--ERC1	1	2	WNK1	10269	chr12:968630:+	ERC1	71456	chr12:1517315:+	ONLY_REF_SPLICE	NO	70	44	0.04	0.06	0.0101	0.0201	{Klijn_CCL:Stomach=1,Kidney=1,Head-Neck=1},NEIGHBORS[79057],WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	JHOC5_OVARY	0.04	0.06	0.0302	FALSE	0	0	0	1	0	FALSE	ACH-000324
JHOC5_OVARY	AC034193.5--DAG1	1	1	AC034193.5	2115	chr3:10029691:+	DAG1	20935	chr3:49547852:+	ONLY_REF_SPLICE	NO	22	112	0.08	0.02	0.0101	0.0101	AC034193.5->chr3:10028577-10048674:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	JHOC5_OVARY	0.02	0.08	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000324
JHOC5_OVARY	EGFR--SEC61G	1	1	EGFR	1345	chr7:55087058:+	SEC61G	47208	chr7:54825287:-	ONLY_REF_SPLICE	YES	282	25	0.01	0.07	0.0101	0.0101	EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,SEC61G->Sec61_translocon_gamma_subunit,chr7:54819943-54827667:-	JHOC5_OVARY	0.01	0.07	0.0202	FALSE	1	5	0	2	4	FALSE	ACH-000324
JHOC5_OVARY	HELZ--RYK	1	1	HELZ	38385	chr17:65103285:-	RYK	59117	chr3:133914026:-	ONLY_REF_SPLICE	YES	55	143	0.04	0.01	0.0101	0.0101	HELZ->chr17:65066554-65242105:-,helicase_with_zinc_finger,RYK->chr3:133784147-133969689:-,receptor-like_tyrosine_kinase	JHOC5_OVARY	0.01	0.04	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000324
JHOC5_OVARY	LIMK2--CDKL3	1	1	LIMK2	2286	chr22:31621805:+	CDKL3	41298	chr5:133541822:-	ONLY_REF_SPLICE	NO	44	0	0.04	1	0.0101	0.0101	LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+,CDKL3->chr5:133541305-133706738:-,cyclin_dependent_kinase_like_3	JHOC5_OVARY	0.04	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000324
JHOC5_OVARY	NCOR2--UBC	1	1	NCOR2	21671	chr12:124882665:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	50	64	0.04	0.03	0.0101	0.0101	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	JHOC5_OVARY	0.03	0.04	0.0202	TRUE	30	26	0	16	0	FALSE	ACH-000324
JHOC5_OVARY	RNF4--ADD1	1	1	RNF4	2916	chr4:2470985:+	ADD1	29951	chr4:2877623:+	ONLY_REF_SPLICE	YES	68	66	0.03	0.03	0.0101	0.0101	RNF4->chr4:2463947-2627047:+,ring_finger_protein_4,ADD1->adducin_1,chr4:2845584-2931803:+	JHOC5_OVARY	0.03	0.03	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000324
JHOC5_OVARY	RNF4--SH3BP2	1	1	RNF4	2887	chr4:2470956:+	SH3BP2	35322	chr4:2822341:+	ONLY_REF_SPLICE	YES	20	24	0.09	0.08	0.0101	0.0101	RNF4->chr4:2463947-2627047:+,ring_finger_protein_4,SH3BP2->Oncogene{Bushman},SH3_domain_binding_protein_2,chr4:2794750-2842825:+	JHOC5_OVARY	0.08	0.09	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000324
JHOC5_OVARY	RP11-307P5.1--SASH1	1	1	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	6	1	0.25	0.0101	0.0101	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	JHOC5_OVARY	0.25	1	0.0202	TRUE	0	0	0	16	0	TRUE	ACH-000324
JHOC5_OVARY	SEC31A--SHKBP1	1	1	SEC31A	7242	chr4:83801952:-	SHKBP1	42723	chr19:41083137:+	ONLY_REF_SPLICE	NO	187	106	0.01	0.02	0.0101	0.0101	HGNC_GENEFAM,SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-,SHKBP1->SH3KBP1_binding_protein_1,chr19:41082757-41097305:+	JHOC5_OVARY	0.01	0.02	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000324
KS1_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	96	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4491	0.317	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KS1_CENTRAL_NERVOUS_SYSTEM	1	1	1.7661	TRUE	508	994	45	981	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBG1	62	2	AC104389.28	1084	chr11:5526799:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	0	3	1	0.96	0.9359	0.0302	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	KS1_CENTRAL_NERVOUS_SYSTEM	0.96	1	0.9661	FALSE	0	1	0	13	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	MN1--PATZ1	48	26	MN1	5736	chr22:28192751:-	PATZ1	15192	chr22:31740720:-	INCL_NON_REF_SPLICE	YES	0	18	1	0.8	0.7246	0.3925	MN1->Oncogene{Bushman},chr22:28144265-28197486:-,meningioma_(disrupted_in_balanced_translocation)_1,PATZ1->POZ/BTB_and_AT_hook_containing_zinc_finger_1,chr22:31721790-31742218:-	KS1_CENTRAL_NERVOUS_SYSTEM	0.8	1	1.1171	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	45	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	236	2	0.17	0.96	0.6793	0.0453	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KS1_CENTRAL_NERVOUS_SYSTEM	0.17	0.96	0.7246	TRUE	519	3926	326	965	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	SRP14--KDM6A	35	40	SRP14	3852	chr15:40328538:-	KDM6A	24942	chrX:44935942:+	INCL_NON_REF_SPLICE	YES	534	0	0.12	1	0.5283	0.6038	SRP14->chr15:40327940-40331389:-,signal_recognition_particle_14kDa,KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A	KS1_CENTRAL_NERVOUS_SYSTEM	0.12	1	1.1321	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	KDM4A--STPG1	42	3	KDM4A	1095	chr1:44115923:+	STPG1	33146	chr1:24727946:-	ONLY_REF_SPLICE	YES	1	4	0.98	0.92	0.634	0.0453	KDM4A->chr1:44115829-44171186:+,lysine_demethylase_4A,STPG1->chr1:24683489-24743424:-,sperm_tail_PG-rich_repeat_containing_1	KS1_CENTRAL_NERVOUS_SYSTEM	0.92	0.98	0.6793	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	RP11-494M8.4--OVCH2	21	15	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	4	0	0.9	1	0.317	0.2264	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	KS1_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.5434	FALSE	32	0	0	22	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	22	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	31	1	0.47	0.3321	0.0906	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KS1_CENTRAL_NERVOUS_SYSTEM	0.47	1	0.4227	TRUE	465	1949	224	605	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	USP12--POLR1D	20	6	USP12	1305	chr13:27745729:-	POLR1D	19669	chr13:28222516:+	ONLY_REF_SPLICE	YES	6	94	0.81	0.22	0.3019	0.0906	USP12->chr13:27640293-27746033:-,ubiquitin_specific_peptidase_12,POLR1D->chr13:28194903-28241548:+,polymerase_(RNA)_I_subunit_D	KS1_CENTRAL_NERVOUS_SYSTEM	0.22	0.81	0.3925	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	17	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.83	0.2566	0.1208	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KS1_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.3774	TRUE	458	1351	185	561	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	CHSY3--HSPA8P4	12	3	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	98	0	0.13	1	0.1811	0.0453	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	KS1_CENTRAL_NERVOUS_SYSTEM	0.13	1	0.2264	FALSE	89	26	1	44	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	USP12--POLR1D	8	6	USP12	1305	chr13:27745729:-	POLR1D	16184	chr13:28195474:+	ONLY_REF_SPLICE	YES	6	10	0.7	0.58	0.1208	0.0906	USP12->chr13:27640293-27746033:-,ubiquitin_specific_peptidase_12,POLR1D->chr13:28194903-28241548:+,polymerase_(RNA)_I_subunit_D	KS1_CENTRAL_NERVOUS_SYSTEM	0.58	0.7	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	ZNRF3--TTC28	9	1	ZNRF3	1475	chr22:29280054:+	TTC28	23238	chr22:28702631:-	ONLY_REF_SPLICE	YES	2	3	0.83	0.77	0.1359	0.0151	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28	KS1_CENTRAL_NERVOUS_SYSTEM	0.77	0.83	0.151	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	RP11-494M8.4--OVCH2	5	16	RP11-494M8.4	10901	chr11:7775931:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0755	0.2415	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	KS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.317	FALSE	16	1	1	11	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	THYN1--SPATA19	7	6	THYN1	4096	chr11:134120169:-	SPATA19	9991	chr11:133714535:-	ONLY_REF_SPLICE	YES	52	0	0.2	1	0.1057	0.0906	THYN1->chr11:134118173-134123264:-,thymocyte_nuclear_protein_1,SPATA19->chr11:133710526-133715433:-,spermatogenesis_associated_19	KS1_CENTRAL_NERVOUS_SYSTEM	0.2	1	0.1963	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	RP11-494M8.4--OVCH2	4	15	RP11-494M8.4	8241	chr11:7873820:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0604	0.2264	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	KS1_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.2868	FALSE	1	0	0	7	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	RP11-494M8.4--OVCH2	6	5	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	7	0	0.61	1	0.0906	0.0755	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	KS1_CENTRAL_NERVOUS_SYSTEM	0.61	1	0.1661	FALSE	60	13	8	23	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	XXyac-YX155B6.6--HYDIN	7	1	XXyac-YX155B6.6	8884	chr1:147668236:-	HYDIN	22289	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1057	0.0151	GTEx_FI:{Brain=[count:3=pct:0.5]},XXyac-YX155B6.6->chr1:147635066-147700929:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	KS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.1208	TRUE	3	1	0	4	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	STPG1--KDM4A	6	0	STPG1	4261	chr1:24740164:-	KDM4A	24099	chr1:44118808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0906	0	STPG1->chr1:24683489-24743424:-,sperm_tail_PG-rich_repeat_containing_1,KDM4A->chr1:44115829-44171186:+,lysine_demethylase_4A	KS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0906	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	5	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	139	0	0.05	1	0.0755	0.0453	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	KS1_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.1208	FALSE	56	216	12	147	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	MN1--PATZ1	5	2	MN1	5736	chr22:28192751:-	PATZ1	16966	chr22:31738946:-	ONLY_REF_SPLICE	YES	0	39	1	0.15	0.0755	0.0302	MN1->Oncogene{Bushman},chr22:28144265-28197486:-,meningioma_(disrupted_in_balanced_translocation)_1,PATZ1->POZ/BTB_and_AT_hook_containing_zinc_finger_1,chr22:31721790-31742218:-	KS1_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.1057	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	THYN1--SPATA19	4	6	THYN1	4096	chr11:134120169:-	SPATA19	9441	chr11:133715085:-	ONLY_REF_SPLICE	YES	52	0	0.16	1	0.0604	0.0906	THYN1->chr11:134118173-134123264:-,thymocyte_nuclear_protein_1,SPATA19->chr11:133710526-133715433:-,spermatogenesis_associated_19	KS1_CENTRAL_NERVOUS_SYSTEM	0.16	1	0.151	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	COL1A1--NPM1	5	0	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0755	0	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	KS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0755	TRUE	0	0	0	31	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	4	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	6	1	0.57	0.0604	0.0604	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KS1_CENTRAL_NERVOUS_SYSTEM	0.57	1	0.1208	TRUE	477	1352	189	275	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	3	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	43	18	0.17	0.33	0.0453	0.0906	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KS1_CENTRAL_NERVOUS_SYSTEM	0.17	0.33	0.1359	TRUE	267	562	48	632	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	3	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	42	18	0.14	0.28	0.0453	0.0604	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KS1_CENTRAL_NERVOUS_SYSTEM	0.14	0.28	0.1057	TRUE	267	562	48	632	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0302	0.0151	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KS1_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0453	FALSE	292	1546	117	613	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0302	0.0151	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KS1_CENTRAL_NERVOUS_SYSTEM	0.6	1	0.0453	FALSE	125	705	46	456	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	USP12--POLR1D	1	5	USP12	1305	chr13:27745729:-	POLR1D	22412	chr13:28239823:+	ONLY_REF_SPLICE	YES	6	119	0.5	0.05	0.0151	0.0755	USP12->chr13:27640293-27746033:-,ubiquitin_specific_peptidase_12,POLR1D->chr13:28194903-28241548:+,polymerase_(RNA)_I_subunit_D	KS1_CENTRAL_NERVOUS_SYSTEM	0.05	0.5	0.0906	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	CCPG1--GNAS	2	0	CCPG1	1290	chr15:55700419:-	GNAS	40795	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	GTEx&tcga_normals:1/3694=0.03%,CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	KS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	HUWE1--TOP2A	2	0	HUWE1	49981	chrX:53590707:-	TOP2A	99031	chr17:38547892:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,TOP2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38544768-38574202:-,topoisomerase_(DNA)_II_alpha	KS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0302	FALSE	515	4851	409	746	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	YWHAE--TRPC1	2	0	YWHAE	1332	chr17:1303341:-	TRPC1	15878	chr3:142455221:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,TRPC1->chr3:142442916-142526730:+,transient_receptor_potential_cation_channel_subfamily_C_member_1	KS1_CENTRAL_NERVOUS_SYSTEM	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBG1	1	3	AC104389.28	3440	chr11:5367003:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	NO	3	3	0.57	0.57	0.0151	0.0453	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	KS1_CENTRAL_NERVOUS_SYSTEM	0.57	0.57	0.0604	FALSE	0	0	0	7	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	6	1	0.4	0.0151	0.0453	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KS1_CENTRAL_NERVOUS_SYSTEM	0.4	1	0.0604	TRUE	274	363	69	150	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	BICD1--GNAS	1	1	BICD1	1710	chr12:32260478:+	GNAS	41252	chr20:57470667:+	ONLY_REF_SPLICE	YES	89	696	0.02	0	0.0151	0.0151	BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	KS1_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0302	FALSE	0	0	0	1	0	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	1	1	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	860	37	0	0.05	0.0151	0.0151	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	KS1_CENTRAL_NERVOUS_SYSTEM	0	0.05	0.0302	FALSE	0	20	0	35	2	FALSE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	MN1--AFF2	1	1	MN1	5736	chr22:28192751:-	AFF2	15220	chrX:147733520:+	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0151	0.0151	MN1->Oncogene{Bushman},chr22:28144265-28197486:-,meningioma_(disrupted_in_balanced_translocation)_1,AFF2->AF4/FMR2_family_member_2,chrX:147582139-148082193:+	KS1_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000631
KS1_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	58	1	0.03	0.0151	0.0151	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	KS1_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0302	FALSE	141	264	50	91	0	FALSE	ACH-000631
CALU1_LUNG	TIMM23B--LINC00843	44	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4943	0.1236	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CALU1_LUNG	1	1	0.6179	TRUE	508	994	45	981	0	FALSE	ACH-000511
CALU1_LUNG	MT-ND6--MT-TE	39	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4382	0.0225	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU1_LUNG	1	1	0.4607	FALSE	499	1288	110	792	0	FALSE	ACH-000511
CALU1_LUNG	PLXDC1--TAF13	27	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3033	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	CALU1_LUNG	1	1	0.3033	TRUE	7	10	0	216	0	FALSE	ACH-000511
CALU1_LUNG	MT-TA--MT-TC	25	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2809	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CALU1_LUNG	1	1	0.2809	FALSE	462	80	0	856	0	FALSE	ACH-000511
CALU1_LUNG	TIMM23--RP11-464F9.1	24	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	336	1	0.07	0.96	0.2696	0.0225	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CALU1_LUNG	0.07	0.96	0.2921	TRUE	519	3926	326	965	0	FALSE	ACH-000511
CALU1_LUNG	ZNF654--HMGB2	23	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2584	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CALU1_LUNG	1	1	0.2584	TRUE	0	0	0	518	0	FALSE	ACH-000511
CALU1_LUNG	MT-ND6--MT-TE	22	0	MT-ND6	1051	chrM:14623:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2472	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU1_LUNG	1	1	0.2472	FALSE	499	1288	110	792	0	FALSE	ACH-000511
CALU1_LUNG	GPR180--GPC6	17	19	GPR180	3530	chr13:95264644:+	GPC6	25421	chr13:94938603:+	ONLY_REF_SPLICE	YES	77	63	0.32	0.36	0.191	0.2135	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},{Klijn_CCL:Lung=1},GPR180->G_protein-coupled_receptor_180,chr13:95254157-95286899:+,GPC6->chr13:93879095-95059655:+,glypican_6	CALU1_LUNG	0.32	0.36	0.4045	TRUE	0	0	0	2	0	TRUE	ACH-000511
CALU1_LUNG	MT-TA--MT-TC	21	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2359	0.0112	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CALU1_LUNG	1	1	0.2471	FALSE	462	80	0	856	0	FALSE	ACH-000511
CALU1_LUNG	PRR16--CTD-2334D19.1	15	17	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	221	0	0.13	1	0.1685	0.191	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CALU1_LUNG	0.13	1	0.3595	FALSE	56	216	12	147	0	FALSE	ACH-000511
CALU1_LUNG	MT-ND6--MT-TE	13	4	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1461	0.0449	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU1_LUNG	1	1	0.191	FALSE	499	1288	110	792	0	FALSE	ACH-000511
CALU1_LUNG	MT-ND4--MT-ND4L	5	33	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	18	1	0.68	0.97	0.0562	0.3708	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU1_LUNG	0.68	0.97	0.427	FALSE	344	826	44	306	0	FALSE	ACH-000511
CALU1_LUNG	MT-ND4--MT-ND4L	7	22	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	1	0.91	0.97	0.0786	0.2472	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU1_LUNG	0.91	0.97	0.3258	FALSE	344	821	44	306	0	FALSE	ACH-000511
CALU1_LUNG	MT-ND4--MT-ND4L	3	34	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	11	0	0.77	1	0.0337	0.382	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU1_LUNG	0.77	1	0.4157	FALSE	344	826	44	306	0	FALSE	ACH-000511
CALU1_LUNG	MT-ND4--MT-ND4L	3	33	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	10	1	0.78	0.97	0.0337	0.3708	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU1_LUNG	0.78	0.97	0.4045	FALSE	344	826	44	306	0	FALSE	ACH-000511
CALU1_LUNG	MT-ND4--MT-ND4L	10	0	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1124	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU1_LUNG	1	1	0.1124	FALSE	344	827	44	306	0	FALSE	ACH-000511
CALU1_LUNG	C15orf57--CBX3	8	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	35	27	0.27	0.33	0.0899	0.0562	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CALU1_LUNG	0.27	0.33	0.1461	TRUE	267	562	48	632	0	FALSE	ACH-000511
CALU1_LUNG	PRR16--CTD-2334D19.1	3	22	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	144	0	0.15	1	0.0337	0.2472	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CALU1_LUNG	0.15	1	0.2809	FALSE	21	45	1	60	0	FALSE	ACH-000511
CALU1_LUNG	MT-ND4--MT-ND4L	7	5	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	575	0	0.02	1	0.0786	0.0562	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU1_LUNG	0.02	1	0.1348	FALSE	344	827	44	306	0	FALSE	ACH-000511
CALU1_LUNG	RP11-120D5.1--MID1	5	13	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	4	122	0.82	0.13	0.0562	0.1461	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CALU1_LUNG	0.13	0.82	0.2023	FALSE	0	9	0	55	0	FALSE	ACH-000511
CALU1_LUNG	MT-ND6--MT-TE	8	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0899	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU1_LUNG	1	1	0.0899	FALSE	499	1288	110	792	0	FALSE	ACH-000511
CALU1_LUNG	MT-ND6--MT-TE	6	3	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0.0337	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU1_LUNG	1	1	0.1011	FALSE	499	1288	110	792	0	FALSE	ACH-000511
CALU1_LUNG	RCN1--ELP4	6	3	RCN1	12673	chr11:32122154:+	ELP4	33048	chr11:31804941:+	ONLY_REF_SPLICE	YES	1297	91	0.01	0.09	0.0674	0.0337	LOCAL_REARRANGEMENT:+:[28393],RCN1->chr11:31833939-32127301:+,reticulocalbin_1,ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4	CALU1_LUNG	0.01	0.09	0.1011	TRUE	0	0	0	1	0	FALSE	ACH-000511
CALU1_LUNG	RP11-353N4.6--SEC22B	6	3	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	11	696	0.45	0.01	0.0674	0.0337	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	CALU1_LUNG	0.01	0.45	0.1011	TRUE	49	42	7	43	0	FALSE	ACH-000511
CALU1_LUNG	RP11-680G10.1--GSE1	6	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	8	1	0.53	0.0674	0.0337	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CALU1_LUNG	0.53	1	0.1011	TRUE	465	1949	224	605	0	FALSE	ACH-000511
CALU1_LUNG	PRR16--CTD-2334D19.1	2	17	PRR16	3559	chr5:119816988:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	254	0	0.07	1	0.0225	0.191	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CALU1_LUNG	0.07	1	0.2135	FALSE	1	5	0	12	0	FALSE	ACH-000511
CALU1_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU1_LUNG	1	1	0.0674	FALSE	499	1288	110	792	0	FALSE	ACH-000511
CALU1_LUNG	PTPRH--HSPBP1	5	4	PTPRH	7774	chr19:55711604:-	HSPBP1	26452	chr19:55777654:-	ONLY_REF_SPLICE	YES	6	161	0.6	0.05	0.0562	0.0449	LOCAL_REARRANGEMENT:-:[52725],PTPRH->Oncogene{Bushman},chr19:55692616-55720874:-,protein_tyrosine_phosphatase,_receptor_type_H,HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-	CALU1_LUNG	0.05	0.6	0.1011	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	PRR16--CTD-2334D19.1	1	19	PRR16	6887	chr5:119954260:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	256	0	0.07	1	0.0112	0.2135	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CALU1_LUNG	0.07	1	0.2247	FALSE	0	2	0	14	0	FALSE	ACH-000511
CALU1_LUNG	MT-ND6--MT-TE	5	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0.0112	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU1_LUNG	1	1	0.0674	FALSE	499	1288	110	792	0	FALSE	ACH-000511
CALU1_LUNG	RP11-680G10.1--GSE1	4	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.8	0.0449	0.0449	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CALU1_LUNG	0.8	1	0.0898	TRUE	458	1351	185	561	0	FALSE	ACH-000511
CALU1_LUNG	RP11-120D5.1--MID1	2	11	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	122	0.81	0.1	0.0225	0.1236	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CALU1_LUNG	0.1	0.81	0.1461	FALSE	16	356	14	466	0	FALSE	ACH-000511
CALU1_LUNG	MT-TA--MT-TC	4	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0449	0.0112	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CALU1_LUNG	1	1	0.0561	FALSE	462	80	0	856	0	FALSE	ACH-000511
CALU1_LUNG	RP11-120D5.1--MID1	1	13	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	122	0.74	0.1	0.0112	0.1461	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CALU1_LUNG	0.1	0.74	0.1573	FALSE	2	31	0	60	0	FALSE	ACH-000511
CALU1_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0449	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU1_LUNG	1	1	0.0449	FALSE	344	821	44	306	0	FALSE	ACH-000511
CALU1_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1060	chrM:10819:+	MT-ND4L	5647	chrM:10738:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0449	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CALU1_LUNG	1	1	0.0449	FALSE	344	821	44	306	0	FALSE	ACH-000511
CALU1_LUNG	MT-ND6--MT-TE	3	2	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0.0225	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU1_LUNG	1	1	0.0562	FALSE	499	1288	110	792	0	FALSE	ACH-000511
CALU1_LUNG	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0.0225	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CALU1_LUNG	1	1	0.0562	FALSE	462	80	0	856	0	FALSE	ACH-000511
CALU1_LUNG	CTD-2337A12.1--CAST	3	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	128	1	0.03	0.0337	0.0112	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	CALU1_LUNG	0.03	1	0.0449	TRUE	347	1186	183	220	0	FALSE	ACH-000511
CALU1_LUNG	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0.0112	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CALU1_LUNG	1	1	0.0449	FALSE	292	1546	117	613	0	FALSE	ACH-000511
CALU1_LUNG	RP11-123O10.4--GRIP1	2	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0.0562	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CALU1_LUNG	1	1	0.0787	FALSE	416	2512	207	587	0	FALSE	ACH-000511
CALU1_LUNG	DHRS7B--USP22	3	0	DHRS7B	2421	chr17:21030304:+	USP22	20384	chr17:20931987:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_INVERSION:+:-:[79604],DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,USP22->chr17:20902910-20947073:-,ubiquitin_specific_peptidase_22	CALU1_LUNG	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	DNAJC25--UGCG	3	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	CALU1_LUNG	1	1	0.0337	TRUE	50	73	10	50	0	FALSE	ACH-000511
CALU1_LUNG	HSP90AB1--CAP1	3	0	HSP90AB1	4259	chr6:44218082:+	CAP1	14151	chr1:40525048:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+	CALU1_LUNG	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CALU1_LUNG	1	1	0.0337	FALSE	499	1288	110	792	0	FALSE	ACH-000511
CALU1_LUNG	MT-TA--MT-TC	3	0	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CALU1_LUNG	1	1	0.0337	FALSE	462	80	0	856	0	FALSE	ACH-000511
CALU1_LUNG	RP11-444D3.1--SOX5	2	4	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0225	0.0449	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CALU1_LUNG	1	1	0.0674	TRUE	274	363	69	150	0	FALSE	ACH-000511
CALU1_LUNG	HDGFRP2--CREB3L3	2	2	HDGFRP2	2828	chr19:4475580:+	CREB3L3	23436	chr19:4168348:+	ONLY_REF_SPLICE	YES	198	6	0.02	0.4	0.0225	0.0225	HDGFRP2->chr19:4472284-4502223:+,CREB3L3->cAMP_responsive_element_binding_protein_3-like_3,chr19:4153598-4173051:+	CALU1_LUNG	0.02	0.4	0.045	TRUE	0	0	0	1	0	FALSE	ACH-000511
CALU1_LUNG	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	13	0	0.24	1	0.0225	0.0225	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CALU1_LUNG	0.24	1	0.045	FALSE	164	806	69	479	0	FALSE	ACH-000511
CALU1_LUNG	RP11-120D5.1--MID1	1	6	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	122	0.7	0.05	0.0112	0.0674	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CALU1_LUNG	0.05	0.7	0.0786	FALSE	0	48	1	163	0	FALSE	ACH-000511
CALU1_LUNG	RPSAP52--HMGA2	2	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	51	458	0.07	0.01	0.0225	0.0225	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	CALU1_LUNG	0.01	0.07	0.045	FALSE	0	59	0	125	0	FALSE	ACH-000511
CALU1_LUNG	RP11-353N4.6--SEC22B	2	1	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	15	696	0.17	0	0.0225	0.0112	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	CALU1_LUNG	0	0.17	0.0337	FALSE	49	42	7	43	0	FALSE	ACH-000511
CALU1_LUNG	RP11-444D3.1--SOX5	1	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0112	0.0562	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CALU1_LUNG	1	1	0.0674	TRUE	477	1352	189	275	0	FALSE	ACH-000511
CALU1_LUNG	CENPN--EXOC7	2	0	CENPN	3129	chr16:81045715:+	EXOC7	23039	chr17:74094099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	CENPN->centromere_protein_N,chr16:81040103-81066719:+,EXOC7->chr17:74077087-74117657:-,exocyst_complex_component_7	CALU1_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	FADS2--TMEM258	2	0	FADS2	1049	chr11:61560500:+	TMEM258	29821	chr11:61558074:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[178],FADS2->chr11:61560452-61634826:+,fatty_acid_desaturase_2,TMEM258->chr11:61535973-61560274:-,transmembrane_protein_258	CALU1_LUNG	1	1	0.0225	TRUE	0	2	0	5	2	TRUE	ACH-000511
CALU1_LUNG	HMGA2--ATF7	2	0	HMGA2	5315	chr12:66232349:+	ATF7	28610	chr12:53994805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-	CALU1_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	KIRREL3--GNAS	2	0	KIRREL3	2916	chr11:126870351:-	GNAS	44048	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Nucleus_accumbens_(basal_ganglia)=1},KIRREL3->chr11:126293254-126873355:-,kin_of_IRRE_like_3_(Drosophila),GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	CALU1_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	MPRIP--CDRT4	2	0	MPRIP	1427	chr17:16946285:+	CDRT4	56776	chr17:15341517:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,CDRT4->CMT1A_duplicated_region_transcript_4,chr17:15339332-15406922:-	CALU1_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	NRIP1--USP25	2	0	NRIP1	2336	chr21:16415816:-	USP25	39748	chr21:17236587:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Cells_-_Transformed_fibroblasts=1},NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,USP25->chr21:17102344-17252377:+,ubiquitin_specific_peptidase_25	CALU1_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	PARL--MTG2	2	0	PARL	4598	chr3:183580541:-	MTG2	16214	chr20:60768472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	PARL->chr3:183547173-183602721:-,presenilin_associated_rhomboid_like,MTG2->chr20:60758085-60778624:+,mitochondrial_ribosome_associated_GTPase_2	CALU1_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	CALU1_LUNG	1	1	0.0225	TRUE	0	1	0	17	0	TRUE	ACH-000511
CALU1_LUNG	SLC38A2--KANSL2	2	0	SLC38A2	3092	chr12:46764559:-	KANSL2	27505	chr12:49048843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,KANSL2->KAT8_regulatory_NSL_complex_subunit_2,chr12:49047184-49076021:-	CALU1_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	BNIP2--ANXA2	1	2	BNIP2	1400	chr15:59981334:-	ANXA2	37731	chr15:60656722:-	ONLY_REF_SPLICE	NO	67	7380	0.04	0	0.0112	0.0225	BNIP2->BCL2/adenovirus_E1B_19kDa_interacting_protein_2,chr15:59951345-59981733:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	CALU1_LUNG	0	0.04	0.0337	FALSE	0	2	0	6	0	FALSE	ACH-000511
CALU1_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	3	0	0.5	1	0.0112	0.0225	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CALU1_LUNG	0.5	1	0.0337	FALSE	407	2205	196	549	0	FALSE	ACH-000511
CALU1_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0112	0.0225	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CALU1_LUNG	1	1	0.0337	FALSE	467	2173	244	435	0	FALSE	ACH-000511
CALU1_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0112	0.0225	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CALU1_LUNG	0.5	1	0.0337	FALSE	515	4851	409	746	0	FALSE	ACH-000511
CALU1_LUNG	CALD1--BPGM	1	1	CALD1	9086	chr7:134552555:+	BPGM	41513	chr7:134363605:+	ONLY_REF_SPLICE	NO	210	121	0.01	0.02	0.0112	0.0112	LOCAL_REARRANGEMENT:+:[64438],CALD1->caldesmon_1,chr7:134429003-134655479:+,BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+	CALU1_LUNG	0.01	0.02	0.0224	FALSE	0	1	0	2	0	FALSE	ACH-000511
CALU1_LUNG	INVS--ERP44	1	1	INVS	25093	chr9:103060292:+	ERP44	31082	chr9:102822454:-	ONLY_REF_SPLICE	NO	38	220	0.05	0.01	0.0112	0.0112	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[216],INVS->chr9:102861538-103063282:+,inversin,ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44	CALU1_LUNG	0.01	0.05	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000511
CALU1_LUNG	MAEA--CTBP1	1	1	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	6	64	0.25	0.03	0.0112	0.0112	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	CALU1_LUNG	0.03	0.25	0.0224	TRUE	3	14	2	43	0	FALSE	ACH-000511
CALU1_LUNG	MATR3--CTNNA1	1	1	MATR3	9772	chr5:138629494:+	CTNNA1	45982	chr5:138145727:+	ONLY_REF_SPLICE	YES	59	905	0.03	0	0.0112	0.0112	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	CALU1_LUNG	0	0.03	0.0224	FALSE	3	14	0	14	0	FALSE	ACH-000511
CALU1_LUNG	MYLK2--HCK	1	1	MYLK2	7711	chr20:30418692:+	HCK	15231	chr20:30642019:+	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0112	0.0112	MYLK2->chr20:30407111-30422492:+,myosin_light_chain_kinase_2,HCK->HCK_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr20:30639991-30689659:+	CALU1_LUNG	0.25	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000511
CALU1_LUNG	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.22	1	0.0112	0.0112	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CALU1_LUNG	0.22	1	0.0224	FALSE	125	705	46	456	0	FALSE	ACH-000511
CALU1_LUNG	PLCB4--PLCB1	1	1	PLCB4	2500	chr20:9076989:+	PLCB1	91111	chr20:8942843:+	ONLY_REF_SPLICE	YES	40	0	0.05	1	0.0112	0.0112	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	CALU1_LUNG	0.05	1	0.0224	TRUE	0	1	0	2	1	TRUE	ACH-000511
CALU1_LUNG	RNF144B--DEK	1	1	RNF144B	3753	chr6:18399930:+	DEK	25891	chr6:18237747:-	ONLY_REF_SPLICE	NO	28	1697	0.07	0	0.0112	0.0112	GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Colon_-_Sigmoid=1},RNF144B->chr6:18368779-18469105:+,ring_finger_protein_144B,DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-	CALU1_LUNG	0	0.07	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000511
HUG1N_STOMACH	UBE2R2--SH3GL2	238	45	UBE2R2	1368	chr9:33817932:+	SH3GL2	15455	chr9:17747064:+	ONLY_REF_SPLICE	YES	87	0	0.76	1	2.4322	0.4599	UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2,SH3GL2->Oncogene{Bushman},SH3_domain_containing_GRB2_like_2,chr9:17579080-17797127:+	HUG1N_STOMACH	0.76	1	2.8921	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	DTX2P1--PRKRIP1	146	23	DTX2P1	11762	chr7:76641336:+	PRKRIP1	25356	chr7:102016270:+	ONLY_REF_SPLICE	YES	14	45	0.92	0.79	1.492	0.235	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	HUG1N_STOMACH	0.79	0.92	1.727	TRUE	0	0	0	3	0	TRUE	ACH-000239
HUG1N_STOMACH	TIMM23B--LINC00843	125	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.2774	0.2964	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HUG1N_STOMACH	0.99	1	1.5738	TRUE	508	994	45	981	0	FALSE	ACH-000239
HUG1N_STOMACH	MBD3--TCF3	78	34	MBD3	4722	chr19:1584539:-	TCF3	16229	chr19:1650286:-	ONLY_REF_SPLICE	YES	97	15	0.54	0.88	0.7971	0.3475	LOCAL_REARRANGEMENT:-:[16409],MBD3->chr19:1576639-1592882:-,methyl-CpG_binding_domain_protein_3,TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3	HUG1N_STOMACH	0.54	0.88	1.1446	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	TIMM23--RP11-464F9.1	80	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	279	3	0.23	0.96	0.8176	0.0204	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HUG1N_STOMACH	0.23	0.96	0.838	TRUE	519	3926	326	965	0	FALSE	ACH-000239
HUG1N_STOMACH	OR51S1--TP53I11	62	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6336	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HUG1N_STOMACH	1	1	0.6336	TRUE	402	216	10	229	0	FALSE	ACH-000239
HUG1N_STOMACH	RP11-444D3.1--BCAT1	47	41	RP11-444D3.1	1258	chr12:24715267:-	BCAT1	16803	chr12:25054819:-	ONLY_REF_SPLICE	YES	0	3518	1	0.02	0.4803	0.419	RP11-444D3.1->chr12:24366190-24715524:-,BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-	HUG1N_STOMACH	0.02	1	0.8993	TRUE	0	0	0	2	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND6--MT-ND5	41	10	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	3468	1	0.01	0.419	0.1022	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HUG1N_STOMACH	0.01	1	0.5212	FALSE	101	855	57	72	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND6--MT-TE	42	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.4292	0.0307	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUG1N_STOMACH	0.98	1	0.4599	FALSE	499	1288	110	792	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-TA--MT-TC	31	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3168	0.0409	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUG1N_STOMACH	1	1	0.3577	FALSE	462	80	0	856	0	FALSE	ACH-000239
HUG1N_STOMACH	RPS27A--RP11-481J13.1	29	9	RPS27A	3302	chr2:55461340:+	RP11-481J13.1	10111	chr2:56374765:+	ONLY_REF_SPLICE	YES	2377	0	0.02	1	0.2964	0.092	RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a,RP11-481J13.1->chr2:56179293-56408787:+	HUG1N_STOMACH	0.02	1	0.3884	TRUE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	RP11-444D3.1--BCAT1	19	33	RP11-444D3.1	1253	chr12:24715272:-	BCAT1	16803	chr12:25054819:-	ONLY_REF_SPLICE	YES	2	3518	0.96	0.01	0.1942	0.3372	RP11-444D3.1->chr12:24366190-24715524:-,BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-	HUG1N_STOMACH	0.01	0.96	0.5314	TRUE	0	0	0	2	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND6--MT-TE	20	18	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.2044	0.184	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUG1N_STOMACH	0.9	1	0.3884	FALSE	499	1288	110	792	0	FALSE	ACH-000239
HUG1N_STOMACH	HSPBP1--GRK5	24	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2453	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HUG1N_STOMACH	1	1	0.2453	TRUE	1	39	0	134	39	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND5--MT-ATP8	23	4	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4779	5	0.01	0.84	0.235	0.0409	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0.01	0.84	0.2759	FALSE	43	37	8	105	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND5--MT-ATP8	19	8	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.1942	0.0818	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0.9	1	0.276	FALSE	43	37	8	105	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND6--MT-ND5	18	9	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	3262	1	0.01	0.184	0.092	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HUG1N_STOMACH	0.01	1	0.276	FALSE	101	855	57	72	0	FALSE	ACH-000239
HUG1N_STOMACH	UBE2R2--SH3GL2	8	45	UBE2R2	1368	chr9:33817932:+	SH3GL2	13282	chr9:17630352:+	ONLY_REF_SPLICE	YES	87	0	0.38	1	0.0818	0.4599	UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2,SH3GL2->Oncogene{Bushman},SH3_domain_containing_GRB2_like_2,chr9:17579080-17797127:+	HUG1N_STOMACH	0.38	1	0.5417	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	19	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1942	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	1	1	0.1942	FALSE	230	193	14	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND6--MT-TE	18	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.184	0.0307	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUG1N_STOMACH	0.95	1	0.2147	FALSE	499	1288	110	792	0	FALSE	ACH-000239
HUG1N_STOMACH	HSP90AB1--MT-RNR2	18	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	6111	0	0	1	0.184	0.0204	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HUG1N_STOMACH	0	1	0.2044	FALSE	13	9	0	364	0	FALSE	ACH-000239
HUG1N_STOMACH	LAMP1--MT-CO2	18	0	LAMP1	10059	chr13:113976687:+	MT-CO2	14590	chrM:7816:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.184	0	LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUG1N_STOMACH	1	1	0.184	FALSE	0	0	0	6	0	FALSE	ACH-000239
HUG1N_STOMACH	HSP90AB1--MT-RNR2	17	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	6175	0	0	1	0.1737	0.0204	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HUG1N_STOMACH	0	1	0.1941	FALSE	13	9	0	364	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	15	8	MT-ND4	2053	chrM:11812:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13359	59	0	0.28	0.1533	0.0818	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	0.28	0.2351	FALSE	231	215	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	17	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1737	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	1	1	0.1737	FALSE	230	198	14	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	15	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1533	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	1	1	0.1533	FALSE	231	205	14	283	0	FALSE	ACH-000239
HUG1N_STOMACH	C15orf57--CBX3	12	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	26	106	0.46	0.17	0.1226	0.1022	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HUG1N_STOMACH	0.17	0.46	0.2248	TRUE	267	562	48	632	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO2	14	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	135	8	0.11	0.67	0.1431	0.0204	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUG1N_STOMACH	0.11	0.67	0.1635	FALSE	59	21	0	114	0	FALSE	ACH-000239
HUG1N_STOMACH	MBD3--TCF3	4	34	MBD3	4722	chr19:1584539:-	TCF3	16226	chr19:1650289:-	INCL_NON_REF_SPLICE	YES	97	15	0.28	0.72	0.0409	0.3475	LOCAL_REARRANGEMENT:-:[16409],MBD3->chr19:1576639-1592882:-,methyl-CpG_binding_domain_protein_3,TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3	HUG1N_STOMACH	0.28	0.72	0.3884	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	UBE2R2--SH3GL2	5	30	UBE2R2	1368	chr9:33817932:+	SH3GL2	17614	chr9:17761435:+	ONLY_REF_SPLICE	YES	87	1	0.29	0.97	0.0511	0.3066	UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2,SH3GL2->Oncogene{Bushman},SH3_domain_containing_GRB2_like_2,chr9:17579080-17797127:+	HUG1N_STOMACH	0.29	0.97	0.3577	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	11	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	16308	0	0	1	0.1124	0.0307	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	1	0.1431	FALSE	231	217	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	RP11-680G10.1--GSE1	9	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	18	1	0.45	0.092	0.0613	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HUG1N_STOMACH	0.45	1	0.1533	TRUE	465	1949	224	605	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND6--MT-TE	4	25	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.0409	0.2555	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUG1N_STOMACH	0.88	1	0.2964	FALSE	499	1288	110	792	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND6--MT-TE	6	16	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0613	0.1635	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUG1N_STOMACH	0.96	1	0.2248	FALSE	499	1288	110	792	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	9	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	16187	0	0	1	0.092	0.0102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	1	0.1022	FALSE	231	205	14	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	7	9	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2826	59	0.01	0.21	0.0715	0.092	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0.01	0.21	0.1635	FALSE	216	209	16	281	0	FALSE	ACH-000239
HUG1N_STOMACH	DTX2P1--PRKRIP1	3	23	DTX2P1	14033	chr7:76645172:+	PRKRIP1	24297	chr7:102006465:+	INCL_NON_REF_SPLICE	YES	24	55	0.52	0.32	0.0307	0.235	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	HUG1N_STOMACH	0.32	0.52	0.2657	TRUE	0	0	0	2	0	TRUE	ACH-000239
HUG1N_STOMACH	DTX2P1--PRKRIP1	3	23	DTX2P1	19696	chr7:76673095:+	PRKRIP1	24297	chr7:102006465:+	INCL_NON_REF_SPLICE	YES	0	55	1	0.32	0.0307	0.235	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	HUG1N_STOMACH	0.32	1	0.2657	TRUE	0	0	0	2	0	TRUE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO2	8	2	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	124	4	0.07	0.71	0.0818	0.0204	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUG1N_STOMACH	0.07	0.71	0.1022	FALSE	59	21	0	114	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO1	8	1	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	9490	19358	0	0	0.0818	0.0102	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUG1N_STOMACH	0	0	0.092	FALSE	183	104	9	328	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	7	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	14878	5	0	0.69	0.0715	0.0409	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	0.69	0.1124	FALSE	231	217	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND5--MT-ATP8	7	4	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6131	59	0	0.16	0.0715	0.0409	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	0.16	0.1124	FALSE	43	37	8	105	0	FALSE	ACH-000239
HUG1N_STOMACH	NDUFA4--PHF14	8	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0818	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HUG1N_STOMACH	1	1	0.0818	TRUE	19	32	3	60	0	FALSE	ACH-000239
HUG1N_STOMACH	NPM1P24--SET	8	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0818	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HUG1N_STOMACH	1	1	0.0818	TRUE	0	0	0	434	0	FALSE	ACH-000239
HUG1N_STOMACH	FTH1--ACTB	7	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	5727	0	0	1	0.0715	0.0204	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HUG1N_STOMACH	0	1	0.0919	FALSE	1	0	0	97	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND6--MT-TE	3	18	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.84	1	0.0307	0.184	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUG1N_STOMACH	0.84	1	0.2147	FALSE	499	1288	110	792	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO1	7	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	8864	20663	0	0	0.0715	0.0102	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUG1N_STOMACH	0	0	0.0817	FALSE	183	104	9	328	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO2	7	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	73	4	0.1	0.67	0.0715	0.0102	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUG1N_STOMACH	0.1	0.67	0.0817	FALSE	59	21	0	114	0	FALSE	ACH-000239
HUG1N_STOMACH	RPL28--ASPH	6	5	RPL28	3704	chr19:55899416:+	ASPH	43844	chr8:62489417:-	ONLY_REF_SPLICE	YES	1638	68	0.01	0.14	0.0613	0.0511	RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	HUG1N_STOMACH	0.01	0.14	0.1124	TRUE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND6--MT-ND5	7	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HUG1N_STOMACH	1	1	0.0715	FALSE	101	855	57	72	0	FALSE	ACH-000239
HUG1N_STOMACH	C5orf45--KRT8	6	3	C5orf45	15571	chr5:179263515:-	KRT8	26031	chr12:53298552:-	INCL_NON_REF_SPLICE	YES	122	6836	0.07	0	0.0613	0.0307	C5orf45->chr5:179261436-179289173:-,chromosome_5_open_reading_frame_45,KRT8->chr12:53290977-53343738:-,keratin_8	HUG1N_STOMACH	0	0.07	0.092	FALSE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-CO2	6	3	MT-ND4	1942	chrM:11701:+	MT-CO2	5460	chrM:7667:+	INCL_NON_REF_SPLICE	YES	14972	0	0	1	0.0613	0.0307	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUG1N_STOMACH	0	1	0.092	FALSE	5	1	0	19	0	FALSE	ACH-000239
HUG1N_STOMACH	FTH1--ACTB	6	2	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	5945	0	0	1	0.0613	0.0204	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HUG1N_STOMACH	0	1	0.0817	FALSE	1	0	0	97	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO2	6	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	94	4	0.07	0.64	0.0613	0.0102	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUG1N_STOMACH	0.07	0.64	0.0715	FALSE	59	21	0	114	0	FALSE	ACH-000239
HUG1N_STOMACH	SLC27A5--PPP2R1A	6	1	SLC27A5	3567	chr19:59021214:-	PPP2R1A	20938	chr19:52705197:+	ONLY_REF_SPLICE	YES	1	275	0.88	0.02	0.0613	0.0102	SLC27A5->chr19:58990879-59023780:-,solute_carrier_family_27_member_5,PPP2R1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:52693292-52730687:+,protein_phosphatase_2_regulatory_subunit_A,_alpha	HUG1N_STOMACH	0.02	0.88	0.0715	TRUE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	LAMP1--MT-CO2	6	0	LAMP1	10039	chr13:113976667:+	MT-CO2	14579	chrM:7805:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0613	0	LAMP1->chr13:113951556-113977987:+,lysosomal_associated_membrane_protein_1,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUG1N_STOMACH	1	1	0.0613	FALSE	0	0	0	6	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	4	8	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14018	59	0	0.17	0.0409	0.0818	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	0.17	0.1227	FALSE	231	217	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	3	12	MT-ND4	2176	chrM:11935:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	7401	0	0	1	0.0307	0.1226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	1	0.1533	FALSE	231	215	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-CO2	6	0	MT-ND4	1222	chrM:10981:+	MT-CO2	5514	chrM:7721:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0613	0	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUG1N_STOMACH	1	1	0.0613	FALSE	5	1	0	19	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND6--MT-ND5	5	3	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	NO	2	1923	0.8	0	0.0511	0.0307	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HUG1N_STOMACH	0	0.8	0.0818	FALSE	101	855	57	72	0	FALSE	ACH-000239
HUG1N_STOMACH	C15orf57--CBX3	4	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	26	107	0.28	0.09	0.0409	0.0613	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HUG1N_STOMACH	0.09	0.28	0.1022	TRUE	267	562	48	632	0	FALSE	ACH-000239
HUG1N_STOMACH	MBD3--TCF3	1	18	MBD3	4722	chr19:1584539:-	TCF3	17340	chr19:1646426:-	ONLY_REF_SPLICE	YES	97	82	0.16	0.19	0.0102	0.184	LOCAL_REARRANGEMENT:-:[16409],MBD3->chr19:1576639-1592882:-,methyl-CpG_binding_domain_protein_3,TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3	HUG1N_STOMACH	0.16	0.19	0.1942	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	MT-ND5--MT-ATP8	4	6	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	5187	0	0	1	0.0409	0.0613	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	1	0.1022	FALSE	43	37	8	105	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO1	5	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	8503	19163	0	0	0.0511	0.0102	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUG1N_STOMACH	0	0	0.0613	FALSE	183	104	9	328	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO1	5	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8774	21132	0	0	0.0511	0.0102	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUG1N_STOMACH	0	0	0.0613	FALSE	183	104	9	328	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO1	5	1	MT-ATP6	1139	chrM:8665:+	MT-CO1	5217	chrM:6439:+	INCL_NON_REF_SPLICE	YES	9264	19215	0	0	0.0511	0.0102	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUG1N_STOMACH	0	0	0.0613	FALSE	183	104	9	328	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	5	1	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	17168	2	0	0.75	0.0511	0.0102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	0.75	0.0613	FALSE	231	217	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	5	1	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16947	59	0	0.09	0.0511	0.0102	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	0.09	0.0613	FALSE	231	217	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	3	9	MT-ND4	2385	chrM:12144:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	0	2	1	0.86	0.0307	0.092	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0.86	1	0.1227	FALSE	209	205	15	279	0	FALSE	ACH-000239
HUG1N_STOMACH	NPM1P24--SET	5	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	42	975	0.12	0.01	0.0511	0.0102	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HUG1N_STOMACH	0.01	0.12	0.0613	FALSE	0	0	0	434	0	FALSE	ACH-000239
HUG1N_STOMACH	LASP1--MT-ND4L	5	0	LASP1	12948	chr17:37075343:+	MT-ND4L	18644	chrM:10485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HUG1N_STOMACH	1	1	0.0511	FALSE	0	0	0	7	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND6--MT-ND5	4	4	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	685	1	0.01	0.0409	0.0409	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HUG1N_STOMACH	0.01	1	0.0818	FALSE	101	855	57	72	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND6--MT-TE	5	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUG1N_STOMACH	1	1	0.0511	FALSE	499	1288	110	792	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUG1N_STOMACH	1	1	0.0511	FALSE	499	1288	110	792	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-TA--MT-TC	4	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0.0409	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUG1N_STOMACH	1	1	0.0818	FALSE	462	80	0	856	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUG1N_STOMACH	1	1	0.0511	FALSE	462	80	0	856	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-TA--MT-TC	4	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0.0409	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HUG1N_STOMACH	1	1	0.0818	FALSE	462	80	0	856	0	FALSE	ACH-000239
HUG1N_STOMACH	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0511	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HUG1N_STOMACH	1	1	0.0511	FALSE	292	1546	117	613	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	3	7	MT-ND4	1787	chrM:11546:+	MT-ATP8	5393	chrM:8380:+	INCL_NON_REF_SPLICE	YES	14688	0	0	1	0.0307	0.0715	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	1	0.1022	FALSE	231	217	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	3	7	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	14898	0	0	1	0.0307	0.0715	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	1	0.1022	FALSE	231	217	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO2	4	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	135	5	0.04	0.55	0.0409	0.0204	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUG1N_STOMACH	0.04	0.55	0.0613	FALSE	59	21	0	114	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	3	6	MT-ND4	1844	chrM:11603:+	MT-ATP8	5503	chrM:8490:+	INCL_NON_REF_SPLICE	YES	14859	1044	0	0.01	0.0307	0.0613	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	0.01	0.092	FALSE	231	217	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	4	2	MT-ND4	1305	chrM:11064:+	MT-ATP8	5453	chrM:8440:+	INCL_NON_REF_SPLICE	YES	16482	0	0	1	0.0409	0.0204	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	1	0.0613	FALSE	231	205	14	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	3	6	MT-ND4	1793	chrM:11552:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	14727	828	0	0.01	0.0307	0.0613	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	0.01	0.092	FALSE	231	217	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	3	6	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	14904	1528	0	0.01	0.0307	0.0613	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	0.01	0.092	FALSE	231	217	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	3	6	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	14601	0	0	1	0.0307	0.0613	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	1	0.092	FALSE	231	217	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0409	0.0204	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUG1N_STOMACH	1	1	0.0613	FALSE	515	4851	409	746	0	FALSE	ACH-000239
HUG1N_STOMACH	RPL28--ASPH	3	6	RPL28	3704	chr19:55899416:+	ASPH	41813	chr8:62496588:-	ONLY_REF_SPLICE	YES	1638	65	0.01	0.12	0.0307	0.0613	RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	HUG1N_STOMACH	0.01	0.12	0.092	FALSE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO1	4	1	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	YES	8718	18848	0	0	0.0409	0.0102	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUG1N_STOMACH	0	0	0.0511	FALSE	183	104	9	328	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO1	4	1	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	8846	18921	0	0	0.0409	0.0102	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUG1N_STOMACH	0	0	0.0511	FALSE	183	104	9	328	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	3	5	MT-ND4	2050	chrM:11809:+	MT-ATP8	5528	chrM:8515:+	INCL_NON_REF_SPLICE	YES	13359	1854	0	0	0.0307	0.0511	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	0	0.0818	FALSE	231	215	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	JUP--MT-CO3	4	0	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HUG1N_STOMACH	1	1	0.0409	FALSE	0	0	0	33	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO1	4	0	MT-ATP6	1107	chrM:8633:+	MT-CO1	5880	chrM:7102:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUG1N_STOMACH	1	1	0.0409	FALSE	183	104	9	328	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-CO2	4	0	MT-ND4	1217	chrM:10976:+	MT-CO2	5534	chrM:7741:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUG1N_STOMACH	1	1	0.0409	FALSE	5	1	0	19	0	FALSE	ACH-000239
HUG1N_STOMACH	RPS27A--RP11-481J13.1	3	4	RPS27A	2515	chr2:55460553:+	RP11-481J13.1	10111	chr2:56374765:+	ONLY_REF_SPLICE	YES	1877	0	0	1	0.0307	0.0409	RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a,RP11-481J13.1->chr2:56179293-56408787:+	HUG1N_STOMACH	0	1	0.0716	FALSE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	3	3	MT-ND4	1756	chrM:11515:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14473	5	0	0.55	0.0307	0.0307	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	0.55	0.0614	FALSE	231	217	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	3	3	MT-ND4	1777	chrM:11536:+	MT-ATP8	5526	chrM:8513:+	INCL_NON_REF_SPLICE	NO	14669	1804	0	0	0.0307	0.0307	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	0	0.0614	FALSE	231	217	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	3	3	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	16379	0	0	1	0.0307	0.0307	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	1	0.0614	FALSE	231	217	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	3	3	MT-ND4	1645	chrM:11404:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	16496	0	0	1	0.0307	0.0307	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	1	0.0614	FALSE	231	217	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO2	3	2	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	107	5	0.04	0.5	0.0307	0.0204	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUG1N_STOMACH	0.04	0.5	0.0511	FALSE	59	21	0	114	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO2	3	2	MT-ATP6	1174	chrM:8700:+	MT-CO2	4889	chrM:7793:+	INCL_NON_REF_SPLICE	YES	79	7	0.06	0.42	0.0307	0.0204	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUG1N_STOMACH	0.06	0.42	0.0511	FALSE	59	21	0	114	0	FALSE	ACH-000239
HUG1N_STOMACH	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0307	0.0204	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUG1N_STOMACH	1	1	0.0511	FALSE	467	2173	244	435	0	FALSE	ACH-000239
HUG1N_STOMACH	BCAT1--KRAS	3	1	BCAT1	1533	chr12:25101861:-	KRAS	32003	chr12:25380346:-	ONLY_REF_SPLICE	YES	3916	5180	0	0	0.0307	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-,KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-	HUG1N_STOMACH	0	0	0.0409	FALSE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO1	3	1	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	9171	0	0	1	0.0307	0.0102	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUG1N_STOMACH	0	1	0.0409	FALSE	182	97	9	327	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	8804	18691	0	0	0.0307	0.0102	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HUG1N_STOMACH	0	0	0.0409	FALSE	183	104	9	328	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO2	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	73	4	0.05	0.5	0.0307	0.0102	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUG1N_STOMACH	0.05	0.5	0.0409	FALSE	59	21	0	114	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND5--MT-ATP8	3	1	MT-ND5	1198	chrM:12534:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	YES	5414	2	0	0.67	0.0307	0.0102	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	0	0.67	0.0409	FALSE	41	30	6	101	0	FALSE	ACH-000239
HUG1N_STOMACH	NRIP1--AF127936.7	3	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.25	1	0.0307	0.0102	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HUG1N_STOMACH	0.25	1	0.0409	FALSE	125	705	46	456	0	FALSE	ACH-000239
HUG1N_STOMACH	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0.0511	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUG1N_STOMACH	1	1	0.0715	FALSE	76	45	6	15	0	FALSE	ACH-000239
HUG1N_STOMACH	TTC1--RPS23	3	1	TTC1	2440	chr5:159437865:+	RPS23	14664	chr5:81573671:-	ONLY_REF_SPLICE	YES	144	25	0.03	0.14	0.0307	0.0102	TTC1->chr5:159436120-159492550:+,tetratricopeptide_repeat_domain_1,RPS23->chr5:81569177-81574396:-,ribosomal_protein_S23	HUG1N_STOMACH	0.03	0.14	0.0409	TRUE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	CD44--PDHX	3	0	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0307	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HUG1N_STOMACH	1	1	0.0307	TRUE	0	20	0	35	2	FALSE	ACH-000239
HUG1N_STOMACH	HSPBP1--GRK5	3	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HUG1N_STOMACH	1	1	0.0307	TRUE	1	39	0	134	39	FALSE	ACH-000239
HUG1N_STOMACH	MT-ATP6--MT-CO2	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUG1N_STOMACH	1	1	0.0307	FALSE	59	21	0	114	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	1	1	0.0307	FALSE	230	193	14	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	1	1	0.0307	FALSE	230	198	14	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1342	chrM:11101:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HUG1N_STOMACH	1	1	0.0307	FALSE	231	215	16	283	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-CO2	3	0	MT-ND4	1299	chrM:11058:+	MT-CO2	5541	chrM:7748:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUG1N_STOMACH	1	1	0.0307	FALSE	5	1	0	19	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND4--MT-CO2	3	0	MT-ND4	1318	chrM:11077:+	MT-CO2	5753	chrM:7960:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HUG1N_STOMACH	1	1	0.0307	FALSE	5	1	0	19	0	FALSE	ACH-000239
HUG1N_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HUG1N_STOMACH	1	1	0.0307	FALSE	499	1288	110	792	0	FALSE	ACH-000239
HUG1N_STOMACH	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0.0409	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HUG1N_STOMACH	1	1	0.0613	FALSE	407	2205	196	549	0	FALSE	ACH-000239
HUG1N_STOMACH	RPL28--ASPH	2	4	RPL28	2349	chr19:55898061:+	ASPH	41813	chr8:62496588:-	ONLY_REF_SPLICE	YES	3616	65	0	0.08	0.0204	0.0409	RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	HUG1N_STOMACH	0	0.08	0.0613	FALSE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	YIPF6--BAZ1B	3	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0307	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	HUG1N_STOMACH	1	1	0.0307	TRUE	1	23	1	24	8	FALSE	ACH-000239
HUG1N_STOMACH	RP11-680G10.1--GSE1	1	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	7	1	0.53	0.0102	0.0715	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HUG1N_STOMACH	0.53	1	0.0817	TRUE	458	1351	185	561	0	FALSE	ACH-000239
HUG1N_STOMACH	DBF4B--ZNHIT3	2	1	DBF4B	1759	chr17:42786734:+	ZNHIT3	26651	chr17:34849770:+	ONLY_REF_SPLICE	YES	27	157	0.1	0.02	0.0204	0.0102	DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+,ZNHIT3->chr17:34842473-34855154:+,zinc_finger_HIT-type_containing_3	HUG1N_STOMACH	0.02	0.1	0.0306	TRUE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	RP11-120D5.1--MID1	2	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	20	0.6	0.13	0.0204	0.0102	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HUG1N_STOMACH	0.13	0.6	0.0306	FALSE	0	48	1	163	0	FALSE	ACH-000239
HUG1N_STOMACH	RPL23AP79--TTYH1	2	1	RPL23AP79	10223	chr19:59102991:+	TTYH1	18631	chr19:54930302:+	ONLY_REF_SPLICE	YES	47	23	0.06	0.12	0.0204	0.0102	RPL23AP79->chr19:59084870-59111168:+,ribosomal_protein_L23a_pseudogene_79,TTYH1->chr19:54926393-54948080:+,tweety_family_member_1	HUG1N_STOMACH	0.06	0.12	0.0306	TRUE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	BRI3BP--UBC	2	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	HUG1N_STOMACH	1	1	0.0204	TRUE	5	99	5	34	0	FALSE	ACH-000239
HUG1N_STOMACH	CD44--PDHX	2	0	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HUG1N_STOMACH	1	1	0.0204	TRUE	0	7	0	19	1	TRUE	ACH-000239
HUG1N_STOMACH	DANCR--SNX5	2	0	DANCR	1530	chr4:53579126:+	SNX5	10453	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	HUG1N_STOMACH	1	1	0.0204	TRUE	0	0	0	7	0	TRUE	ACH-000239
HUG1N_STOMACH	EHF--PDHX	2	0	EHF	1136	chr11:34642775:+	PDHX	27853	chr11:35006117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	EHF->ETS_homologous_factor,chr11:34642640-34682604:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HUG1N_STOMACH	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	EPS8--DERA	2	0	EPS8	3576	chr12:15942095:-	DERA	39639	chr12:16109870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:-:+:[28843],EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase	HUG1N_STOMACH	1	1	0.0204	TRUE	0	4	0	3	0	TRUE	ACH-000239
HUG1N_STOMACH	FLOT1--ACPT	2	0	FLOT1	3576	chr6:30707935:-	ACPT	11751	chr19:51295330:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	FLOT1->chr6:30695486-30710510:-,flotillin_1,ACPT->acid_phosphatase,_testicular,chr19:51293672-51298481:+	HUG1N_STOMACH	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	NOC4L--ONECUT3	2	0	NOC4L	5448	chr12:132633440:+	ONECUT3	14568	chr19:1775152:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,ONECUT3->chr19:1752372-1780987:+,one_cut_homeobox_3	HUG1N_STOMACH	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	PRDM16--PEX10	2	0	PRDM16	1129	chr1:2985860:+	PEX10	34165	chr1:2341890:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	PRDM16->Oncogene{Bushman},PR_domain_16,chr1:2985732-3355185:+,PEX10->chr1:2336236-2345236:-,peroxisomal_biogenesis_factor_10	HUG1N_STOMACH	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HUG1N_STOMACH	1	1	0.0204	TRUE	5	8	0	33	0	FALSE	ACH-000239
HUG1N_STOMACH	UBR5--AZIN1	2	0	UBR5	1669	chr8:103424401:-	AZIN1	63524	chr8:103870378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-	HUG1N_STOMACH	1	1	0.0204	TRUE	0	0	0	4	0	TRUE	ACH-000239
HUG1N_STOMACH	hsa-mir-1199--SAMD1	2	0	hsa-mir-1199	2342	chr19:14184689:+	SAMD1	8202	chr19:14200174:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_INVERSION:+:-:[12778],hsa-mir-1199->chr19:14183348-14185874:+,SAMD1->chr19:14198652-14201848:-,sterile_alpha_motif_domain_containing_1	HUG1N_STOMACH	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000239
HUG1N_STOMACH	RP11-120D5.1--MID1	1	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	20	1	0.17	0.0102	0.0307	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HUG1N_STOMACH	0.17	1	0.0409	FALSE	16	356	14	466	0	FALSE	ACH-000239
HUG1N_STOMACH	RPL28--ASPH	1	3	RPL28	2349	chr19:55898061:+	ASPH	43844	chr8:62489417:-	ONLY_REF_SPLICE	YES	3616	68	0	0.06	0.0102	0.0307	RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	HUG1N_STOMACH	0	0.06	0.0409	FALSE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	ADAP1--SUN1	1	2	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	NO	198	570	0.01	0.01	0.0102	0.0204	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	HUG1N_STOMACH	0.01	0.01	0.0306	FALSE	16	22	0	27	0	FALSE	ACH-000239
HUG1N_STOMACH	RP11-444D3.1--BCAT1	1	2	RP11-444D3.1	1253	chr12:24715272:-	BCAT1	19076	chr12:25034345:-	ONLY_REF_SPLICE	YES	2	3373	0.6	0	0.0102	0.0204	RP11-444D3.1->chr12:24366190-24715524:-,BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-	HUG1N_STOMACH	0	0.6	0.0306	FALSE	0	0	0	2	0	FALSE	ACH-000239
HUG1N_STOMACH	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	48590	chr7:925693:+	ONLY_REF_SPLICE	YES	198	0	0.01	1	0.0102	0.0102	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	HUG1N_STOMACH	0.01	1	0.0204	FALSE	0	4	0	9	2	FALSE	ACH-000239
HUG1N_STOMACH	ADAP1--SUN1	1	1	ADAP1	6388	chr7:966189:-	SUN1	48590	chr7:925693:+	ONLY_REF_SPLICE	NO	226	0	0.01	1	0.0102	0.0102	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	HUG1N_STOMACH	0.01	1	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	BCAT1--KRAS	1	1	BCAT1	6382	chr12:25047209:-	KRAS	32003	chr12:25380346:-	ONLY_REF_SPLICE	YES	3190	5180	0	0	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-,KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-	HUG1N_STOMACH	0	0	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	DANCR--FOXN3	1	1	DANCR	1530	chr4:53579126:+	FOXN3	15171	chr14:89817152:-	ONLY_REF_SPLICE	YES	778	13	0	0.13	0.0102	0.0102	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,FOXN3->chr14:89591215-90085493:-,forkhead_box_N3	HUG1N_STOMACH	0	0.13	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	FLNB--SLMAP	1	1	FLNB	10769	chr3:58088067:+	SLMAP	71262	chr3:57875768:+	ONLY_REF_SPLICE	YES	200	96	0.01	0.02	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},{Klijn_CCL:Breast=1,Stomach=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[79232],FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	HUG1N_STOMACH	0.01	0.02	0.0204	FALSE	0	1	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	JMJD1C--RPL30	1	1	JMJD1C	2633	chr10:65140078:-	RPL30	36080	chr8:99057627:-	ONLY_REF_SPLICE	YES	14	89	0.12	0.02	0.0102	0.0102	JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	HUG1N_STOMACH	0.02	0.12	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	KRAS--BCAT1	1	1	KRAS	1186	chr12:25403685:-	BCAT1	21412	chr12:25054819:-	ONLY_REF_SPLICE	YES	4021	3518	0	0	0.0102	0.0102	KRAS->ArcherDX_panel,FoundationOne_panel,Kirsten_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:25357723-25403870:-,BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-	HUG1N_STOMACH	0	0	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	MAFF--TMEM184B	1	1	MAFF	1331	chr22:38598219:+	TMEM184B	10717	chr22:38644025:-	ONLY_REF_SPLICE	YES	63	96	0.03	0.02	0.0102	0.0102	LOCAL_INVERSION:+:-:[2780],MAFF->chr22:38597889-38612518:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_F,TMEM184B->chr22:38615298-38669040:-,transmembrane_protein_184B	HUG1N_STOMACH	0.02	0.03	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.12	1	0.0102	0.0102	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HUG1N_STOMACH	0.12	1	0.0204	FALSE	164	806	69	479	0	FALSE	ACH-000239
HUG1N_STOMACH	RPS27A--RP11-481J13.1	1	1	RPS27A	1970	chr2:55460008:+	RP11-481J13.1	10111	chr2:56374765:+	ONLY_REF_SPLICE	YES	414	0	0	1	0.0102	0.0102	RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a,RP11-481J13.1->chr2:56179293-56408787:+	HUG1N_STOMACH	0	1	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000239
HUG1N_STOMACH	TAX1BP1--HNRNPA2B1	1	1	TAX1BP1	10902	chr7:27827222:+	HNRNPA2B1	34834	chr7:26237352:-	ONLY_REF_SPLICE	YES	580	2039	0	0	0.0102	0.0102	TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1	HUG1N_STOMACH	0	0	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000239
SNU761_LIVER	MT-TA--MT-TN	211	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.7177	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	1.7177	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TC	159	45	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2944	0.3663	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU761_LIVER	1	1	1.6607	FALSE	462	80	0	856	0	FALSE	ACH-000537
SNU761_LIVER	MYH9--RP5-1119A7.14	146	41	MYH9	38060	chr22:36681167:-	RP5-1119A7.14	45756	chr22:36841654:-	ONLY_REF_SPLICE	YES	2321	0	0.07	1	1.1886	0.3338	LOCAL_REARRANGEMENT:-:[57382],MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,RP5-1119A7.14->chr22:36841445-36850991:-	SNU761_LIVER	0.07	1	1.5224	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	TIMM23B--LINC00843	92	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.749	0.114	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU761_LIVER	1	1	0.863	TRUE	508	994	45	981	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TN	26	141	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2117	1.1479	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	1.3596	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	TIMM23--RP11-464F9.1	59	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	133	1	0.31	0.98	0.4803	0.0081	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU761_LIVER	0.31	0.98	0.4884	TRUE	519	3926	326	965	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TN	19	110	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1547	0.8955	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	1.0502	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TN	46	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3745	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	0.3745	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TN	20	79	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1628	0.6431	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	0.8059	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TN	18	82	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1465	0.6675	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	0.814	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TC	37	3	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3012	0.0244	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU761_LIVER	1	1	0.3256	FALSE	462	80	0	856	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TN	28	32	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2279	0.2605	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	0.4884	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TN	4	126	MT-TA	1054	chrM:5602:-	MT-TN	4012	chrM:5787:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	1.0257	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	1.0583	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	7	92	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	YES	29	0	0.77	1	0.057	0.749	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	0.77	1	0.806	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	10	80	MT-CO3	1153	chrM:9359:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	17	6	0.84	0.94	0.0814	0.6513	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	0.84	0.94	0.7327	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TN	17	51	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1384	0.4152	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	0.5536	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	7	86	MT-CO3	1220	chrM:9426:+	MT-ATP6	4919	chrM:8661:+	INCL_NON_REF_SPLICE	YES	29	40	0.76	0.7	0.057	0.7001	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	0.7	0.76	0.7571	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	MT-ND6--MT-TE	28	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2279	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU761_LIVER	1	1	0.2279	FALSE	499	1288	110	792	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	3	98	MT-CO3	1457	chrM:9663:+	MT-ATP6	4751	chrM:8493:+	INCL_NON_REF_SPLICE	YES	129	0	0.44	1	0.0244	0.7978	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	0.44	1	0.8222	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	CTD-2008L17.1--RP11-456O19.2	26	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	3	0	0.91	1	0.2117	0.0326	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SNU761_LIVER	0.91	1	0.2443	FALSE	33	240	4	98	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	6	84	MT-CO3	1322	chrM:9528:+	MT-ATP6	5065	chrM:8807:+	INCL_NON_REF_SPLICE	NO	61	88	0.6	0.51	0.0488	0.6838	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	0.51	0.6	0.7326	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TC	8	75	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0.6106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU761_LIVER	1	1	0.6757	FALSE	462	80	0	856	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	6	79	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	16	6	0.84	0.93	0.0488	0.6431	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	0.84	0.93	0.6919	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TN	8	71	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0.578	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	0.6431	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	5	82	MT-CO3	1220	chrM:9426:+	MT-ATP6	5176	chrM:8918:+	INCL_NON_REF_SPLICE	NO	29	71	0.75	0.55	0.0407	0.6675	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	0.55	0.75	0.7082	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	3	82	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	137	59	0.38	0.59	0.0244	0.6675	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	0.38	0.59	0.6919	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	5	68	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	3	2	0.96	0.97	0.0407	0.5536	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	0.96	0.97	0.5943	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	4	68	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	3	5	0.96	0.94	0.0326	0.5536	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	0.94	0.96	0.5862	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	RP11-319G9.5--WWOX	20	2	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	8	1	0.73	0.1628	0.0163	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	SNU761_LIVER	0.73	1	0.1791	FALSE	154	425	28	76	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	3	68	MT-CO3	1083	chrM:9289:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	2	42	0.97	0.63	0.0244	0.5536	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	0.63	0.97	0.578	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	LINC00623--SRGAP2B	19	2	LINC00623	2231	chr1:144340526:-	SRGAP2B	23948	chr1:143915700:+	ONLY_REF_SPLICE	YES	137	11	0.13	0.66	0.1547	0.0163	LINC00623->chr1:144275918-144341756:-,long_intergenic_non-protein_coding_RNA_623,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	SNU761_LIVER	0.13	0.66	0.171	TRUE	0	2	0	1	2	TRUE	ACH-000537
SNU761_LIVER	CHKA--GRM5	19	1	CHKA	1617	chr11:67888295:-	GRM5	34048	chr11:88301160:-	ONLY_REF_SPLICE	YES	57	0	0.26	1	0.1547	0.0081	CHKA->Oncogene{Bushman},choline_kinase_alpha,chr11:67820326-67888911:-,GRM5->chr11:88237744-88799113:-,glutamate_metabotropic_receptor_5	SNU761_LIVER	0.26	1	0.1628	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	MT-TA--MT-TC	7	45	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0.3663	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU761_LIVER	1	1	0.4233	FALSE	462	80	0	856	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	3	60	MT-CO3	1072	chrM:9278:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	1	42	0.98	0.6	0.0244	0.4884	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	0.6	0.98	0.5128	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TN	18	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1465	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	0.1465	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	MT-ND6--MT-TE	17	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1384	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU761_LIVER	1	1	0.1384	FALSE	499	1288	110	792	0	FALSE	ACH-000537
SNU761_LIVER	NIPA2--POLA1	17	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1384	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SNU761_LIVER	1	1	0.1384	TRUE	46	1352	75	139	0	FALSE	ACH-000537
SNU761_LIVER	ZNF19--AP1G1	17	0	ZNF19	1197	chr16:71598796:-	AP1G1	50201	chr16:71768610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1384	0	ZNF19->chr16:71498453-71598992:-,zinc_finger_protein_19,AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-	SNU761_LIVER	1	1	0.1384	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	MT-ND1--MT-TL1	14	11	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.114	0.0895	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SNU761_LIVER	0.96	1	0.2035	FALSE	210	95	5	49	0	FALSE	ACH-000537
SNU761_LIVER	MT-ND6--MT-TE	14	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.114	0.0814	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU761_LIVER	0.96	1	0.1954	FALSE	499	1288	110	792	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TC	4	50	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0.407	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU761_LIVER	1	1	0.4396	FALSE	462	80	0	856	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TC	6	39	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0.3175	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU761_LIVER	1	1	0.3663	FALSE	462	80	0	856	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TC	9	25	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0733	0.2035	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU761_LIVER	1	1	0.2768	FALSE	462	80	0	856	0	FALSE	ACH-000537
SNU761_LIVER	RP11-96H19.1--RP11-446N19.1	14	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.95	0.114	0.0407	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU761_LIVER	0.95	1	0.1547	FALSE	515	4851	409	746	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	5	40	MT-CO3	1033	chrM:9239:+	MT-ATP6	4768	chrM:8510:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0407	0.3256	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	0.98	1	0.3663	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TN	15	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1221	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	0.1221	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TC	4	39	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0.3175	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU761_LIVER	1	1	0.3501	FALSE	462	80	0	856	0	FALSE	ACH-000537
SNU761_LIVER	MT-ND1--MT-TL1	3	42	MT-ND1	1094	chrM:3400:+	MT-TL1	4988	chrM:3261:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0244	0.3419	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SNU761_LIVER	0.98	1	0.3663	FALSE	210	95	5	49	0	FALSE	ACH-000537
SNU761_LIVER	LINC00299--AC007464.1	13	1	LINC00299	17125	chr2:8200478:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1058	0.0081	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	SNU761_LIVER	1	1	0.1139	TRUE	20	19	0	15	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	11	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	17	0	0.45	1	0.0895	0.0244	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	0.45	1	0.1139	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	RP11-973F15.1--RP11-94A24.1	11	3	RP11-973F15.1	3763	chr8:123682599:-	RP11-94A24.1	7870	chr8:123429261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0895	0.0244	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	SNU761_LIVER	1	1	0.1139	TRUE	0	2	0	7	2	TRUE	ACH-000537
SNU761_LIVER	MT-ND6--MT-TE	9	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0733	0.0733	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU761_LIVER	1	1	0.1466	FALSE	499	1288	110	792	0	FALSE	ACH-000537
SNU761_LIVER	MT-ND6--MT-TE	8	13	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0651	0.1058	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU761_LIVER	0.95	1	0.1709	FALSE	499	1288	110	792	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	3	32	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.85	0.0244	0.2605	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	0.85	1	0.2849	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	ZNF654--HMGB2	11	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0895	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU761_LIVER	1	1	0.0895	TRUE	0	0	0	518	0	FALSE	ACH-000537
SNU761_LIVER	FGFR1--FSIP1	10	3	FGFR1	9195	chr8:38314874:-	FSIP1	43648	chr15:40005782:-	ONLY_REF_SPLICE	YES	71	0	0.15	1	0.0814	0.0244	FGFR1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr8:38268656-38326352:-,fibroblast_growth_factor_receptor_1,FSIP1->chr15:39892232-40075031:-,fibrous_sheath_interacting_protein_1	SNU761_LIVER	0.15	1	0.1058	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	STAU2--MYBL1	10	3	STAU2	27314	chr8:74439926:-	MYBL1	46341	chr8:67488610:-	ONLY_REF_SPLICE	YES	22	33	0.37	0.28	0.0814	0.0244	STAU2->chr8:74332604-74659943:-,staufen_double-stranded_RNA_binding_protein_2,MYBL1->MYB_proto-oncogene_like_1,Oncogene{Bushman},chr8:67474410-67526482:-	SNU761_LIVER	0.28	0.37	0.1058	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	MT-ND3--MT-ATP8	10	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0814	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU761_LIVER	1	1	0.0814	FALSE	351	233	23	137	0	FALSE	ACH-000537
SNU761_LIVER	MAML2--ENPP7P8	9	3	MAML2	2798	chr11:96074547:-	ENPP7P8	16185	chr11:71425421:+	ONLY_REF_SPLICE	YES	5	0	0.71	1	0.0733	0.0244	MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,ENPP7P8->chr11:71422786-71492229:+,ectonucleotide_pyrophosphatase/phosphodiesterase_7_pseudogene_8	SNU761_LIVER	0.71	1	0.0977	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	TAOK1--OLFML2A	9	3	TAOK1	1561	chr17:27718042:+	OLFML2A	40739	chr9:127549254:+	ONLY_REF_SPLICE	YES	14	33	0.46	0.27	0.0733	0.0244	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,OLFML2A->chr9:127539437-127577164:+,olfactomedin_like_2A	SNU761_LIVER	0.27	0.46	0.0977	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	C15orf57--CBX3	9	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	55	50	0.17	0.18	0.0733	0.0163	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU761_LIVER	0.17	0.18	0.0896	TRUE	267	562	48	632	0	FALSE	ACH-000537
SNU761_LIVER	MT-ND6--MT-TE	4	19	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0.1547	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU761_LIVER	1	1	0.1873	FALSE	499	1288	110	792	0	FALSE	ACH-000537
SNU761_LIVER	RP11-96H19.1--RP11-446N19.1	7	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.057	0.057	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU761_LIVER	0.93	1	0.114	FALSE	467	2173	244	435	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	3	22	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	16	1	0.61	0.96	0.0244	0.1791	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	0.61	0.96	0.2035	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	MT-ND1--MT-TL1	8	0	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SNU761_LIVER	1	1	0.0651	FALSE	210	95	5	49	0	FALSE	ACH-000537
SNU761_LIVER	CTD-2337A12.1--CAST	7	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	25	1	0.26	0.057	0.0163	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU761_LIVER	0.26	1	0.0733	TRUE	347	1186	183	220	0	FALSE	ACH-000537
SNU761_LIVER	RP11-120D5.1--MID1	7	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	41	0.8	0.16	0.057	0.0081	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU761_LIVER	0.16	0.8	0.0651	FALSE	16	356	14	466	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	7	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	1	1	0.057	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TN	7	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	0.057	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TC	4	11	MT-TA	1054	chrM:5602:-	MT-TC	4109	chrM:5787:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0.0895	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU761_LIVER	1	1	0.1221	FALSE	462	80	0	856	0	FALSE	ACH-000537
SNU761_LIVER	RPSAP52--HMGA2	6	3	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	4	214	0.69	0.04	0.0488	0.0244	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SNU761_LIVER	0.04	0.69	0.0732	FALSE	0	59	0	125	0	FALSE	ACH-000537
SNU761_LIVER	ACTR3C--RP11-728K20.1	6	2	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	13	0	0.38	1	0.0488	0.0163	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	SNU761_LIVER	0.38	1	0.0651	TRUE	0	5	0	16	1	FALSE	ACH-000537
SNU761_LIVER	SLC16A12--LIPA	6	2	SLC16A12	5062	chr10:91222136:-	LIPA	22973	chr10:91074416:-	ONLY_REF_SPLICE	YES	15	3	0.35	0.73	0.0488	0.0163	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SNU761_LIVER	0.35	0.73	0.0651	FALSE	1	78	7	7	0	FALSE	ACH-000537
SNU761_LIVER	CMTM8--CMTM7	6	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	34	29	0.17	0.19	0.0488	0.0081	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	SNU761_LIVER	0.17	0.19	0.0569	FALSE	118	557	29	88	0	FALSE	ACH-000537
SNU761_LIVER	MT-ND6--MT-TE	3	13	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0244	0.1058	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU761_LIVER	0.94	1	0.1302	FALSE	499	1288	110	792	0	FALSE	ACH-000537
SNU761_LIVER	CALM3--MT-ND4L	5	4	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	873	0	0.01	1	0.0407	0.0326	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU761_LIVER	0.01	1	0.0733	FALSE	1	1	0	107	0	FALSE	ACH-000537
SNU761_LIVER	MT-ND6--MT-TE	3	12	MT-ND6	1096	chrM:14578:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0.0977	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU761_LIVER	1	1	0.1221	FALSE	499	1288	110	792	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	0.0488	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	RP11-680G10.1--GSE1	5	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.0407	0.0163	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU761_LIVER	0.88	1	0.057	TRUE	458	1351	185	561	0	FALSE	ACH-000537
SNU761_LIVER	AKT1--MT-CO3	5	1	AKT1	15178	chr14:105237091:-	MT-CO3	19804	chrM:9427:+	INCL_NON_REF_SPLICE	YES	804	14158	0.01	0	0.0407	0.0081	AKT1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr14:105235686-105262088:-,v-akt_murine_thymoma_viral_oncogene_homolog_1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU761_LIVER	0	0.01	0.0488	FALSE	0	0	0	1	0	FALSE	ACH-000537
SNU761_LIVER	IGFBP7--MT-ND4L	5	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU761_LIVER	1	1	0.0407	FALSE	1	0	0	30	0	FALSE	ACH-000537
SNU761_LIVER	RP11-120D5.1--MID1	4	2	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	1	41	0.86	0.13	0.0326	0.0163	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU761_LIVER	0.13	0.86	0.0489	FALSE	0	9	0	55	0	FALSE	ACH-000537
SNU761_LIVER	SLC16A12--LIPA	4	2	SLC16A12	5062	chr10:91222136:-	LIPA	29664	chr10:91007406:-	ONLY_REF_SPLICE	YES	15	36	0.29	0.14	0.0326	0.0163	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SNU761_LIVER	0.14	0.29	0.0489	FALSE	12	128	21	13	0	FALSE	ACH-000537
SNU761_LIVER	CTTN--UNC5D	4	1	CTTN	3602	chr11:70253697:+	UNC5D	28056	chr8:35425616:+	ONLY_REF_SPLICE	YES	1016	0	0	1	0.0326	0.0081	CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin,UNC5D->chr8:35092975-35654068:+,unc-5_netrin_receptor_D	SNU761_LIVER	0	1	0.0407	FALSE	0	0	0	1	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TN	4	1	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0.0081	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	0.0407	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	RP11-353N4.6--SEC22B	4	1	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	131	202	0.04	0.02	0.0326	0.0081	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SNU761_LIVER	0.02	0.04	0.0407	TRUE	49	42	7	43	0	FALSE	ACH-000537
SNU761_LIVER	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU761_LIVER	1	1	0.0326	FALSE	499	1288	110	792	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	0.0326	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	NRIP1--AF127936.7	4	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU761_LIVER	1	1	0.0326	FALSE	164	806	69	479	0	FALSE	ACH-000537
SNU761_LIVER	ACTR3C--RP11-728K20.1	3	2	ACTR3C	9721	chr7:149946037:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	7	0	0.42	1	0.0244	0.0163	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	SNU761_LIVER	0.42	1	0.0407	TRUE	0	0	0	1	0	FALSE	ACH-000537
SNU761_LIVER	LINC00623--SRGAP2B	3	2	LINC00623	2231	chr1:144340526:-	SRGAP2B	23941	chr1:143915693:+	INCL_NON_REF_SPLICE	YES	137	12	0.04	0.29	0.0244	0.0163	LINC00623->chr1:144275918-144341756:-,long_intergenic_non-protein_coding_RNA_623,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	SNU761_LIVER	0.04	0.29	0.0407	TRUE	0	2	0	1	2	TRUE	ACH-000537
SNU761_LIVER	STAU2--MYBL1	3	2	STAU2	23792	chr8:74464247:-	MYBL1	46341	chr8:67488610:-	ONLY_REF_SPLICE	YES	34	33	0.13	0.13	0.0244	0.0163	STAU2->chr8:74332604-74659943:-,staufen_double-stranded_RNA_binding_protein_2,MYBL1->MYB_proto-oncogene_like_1,Oncogene{Bushman},chr8:67474410-67526482:-	SNU761_LIVER	0.13	0.13	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	AKT1--MT-CO3	3	1	AKT1	15164	chr14:105237105:-	MT-CO3	19791	chrM:9414:+	INCL_NON_REF_SPLICE	YES	798	14020	0	0	0.0244	0.0081	AKT1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr14:105235686-105262088:-,v-akt_murine_thymoma_viral_oncogene_homolog_1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU761_LIVER	0	0	0.0325	FALSE	0	0	0	1	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TN	3	1	MT-TA	1054	chrM:5602:-	MT-TN	4113	chrM:5686:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0.0081	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	0.0325	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0.0407	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU761_LIVER	1	1	0.057	FALSE	407	2205	196	549	0	FALSE	ACH-000537
SNU761_LIVER	VTI1A--RP11-57H14.3	3	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	28	0	0.12	1	0.0244	0.0081	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SNU761_LIVER	0.12	1	0.0325	FALSE	272	151	14	158	0	FALSE	ACH-000537
SNU761_LIVER	CALM3--MT-ND4L	3	0	CALM3	7109	chr19:47112611:+	MT-ND4L	11624	chrM:10545:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU761_LIVER	1	1	0.0244	FALSE	1	1	0	107	0	FALSE	ACH-000537
SNU761_LIVER	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU761_LIVER	1	1	0.0244	FALSE	189	492	56	216	0	FALSE	ACH-000537
SNU761_LIVER	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU761_LIVER	1	1	0.0244	FALSE	499	1288	110	792	0	FALSE	ACH-000537
SNU761_LIVER	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU761_LIVER	1	1	0.0244	FALSE	369	2501	205	193	0	FALSE	ACH-000537
SNU761_LIVER	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU761_LIVER	1	1	0.0244	TRUE	0	0	0	434	0	FALSE	ACH-000537
SNU761_LIVER	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU761_LIVER	1	1	0.0244	FALSE	292	1546	117	613	0	FALSE	ACH-000537
SNU761_LIVER	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0081	0.057	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU761_LIVER	1	1	0.0651	FALSE	192	492	57	212	0	FALSE	ACH-000537
SNU761_LIVER	LINC00299--AC007464.1	2	1	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0163	0.0081	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	SNU761_LIVER	0.75	1	0.0244	TRUE	67	49	0	25	0	FALSE	ACH-000537
SNU761_LIVER	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	16	1	0.16	0.0163	0.0081	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU761_LIVER	0.16	1	0.0244	TRUE	465	1949	224	605	0	FALSE	ACH-000537
SNU761_LIVER	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0081	0.0407	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU761_LIVER	1	1	0.0488	FALSE	275	511	55	178	0	FALSE	ACH-000537
SNU761_LIVER	ACTR3C--RP11-728K20.1	2	0	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	19906	chr7:149588390:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	SNU761_LIVER	1	1	0.0163	TRUE	3	46	4	12	0	FALSE	ACH-000537
SNU761_LIVER	ATAD2--DERL1	2	0	ATAD2	5205	chr8:124392769:-	DERL1	40099	chr8:124035019:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-,DERL1->chr8:124025404-124054663:-,derlin_1	SNU761_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	DNAJC25--UGCG	2	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	SNU761_LIVER	1	1	0.0163	TRUE	50	73	10	50	0	FALSE	ACH-000537
SNU761_LIVER	IKZF2--SLC39A10	2	0	IKZF2	5217	chr2:214012432:-	SLC39A10	33995	chr2:196544756:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,SLC39A10->chr2:196440701-196602426:+,solute_carrier_family_39_member_10	SNU761_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	LINC00299--AC007464.1	2	0	LINC00299	17125	chr2:8200478:-	AC007464.1	27081	chr2:8108410:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	SNU761_LIVER	1	1	0.0163	TRUE	1	0	0	2	0	FALSE	ACH-000537
SNU761_LIVER	LINC00299--AC007464.1	2	0	LINC00299	11974	chr2:8427468:-	AC007464.1	27081	chr2:8108410:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	SNU761_LIVER	1	1	0.0163	TRUE	2	0	0	3	0	FALSE	ACH-000537
SNU761_LIVER	MOSPD2--CAPZB	2	0	MOSPD2	1318	chrX:14891880:+	CAPZB	27457	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	MOSPD2->chrX:14891563-14940449:+,motile_sperm_domain_containing_2,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	SNU761_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	NBR2--BRCA1	2	0	NBR2	1161	chr17:41277787:+	BRCA1	29133	chr17:41234592:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	LOCAL_INVERSION:+:-:[127],NBR2->chr17:41277627-41305688:+,neighbor_of_BRCA1_gene_2_(non-protein_coding),BRCA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_1,chr17:41196312-41277500:-	SNU761_LIVER	1	1	0.0163	TRUE	0	0	0	2	0	TRUE	ACH-000537
SNU761_LIVER	RNF213--GGA1	2	0	RNF213	41437	chr17:78325603:+	GGA1	88639	chr22:38014455:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,GGA1->Oncogene{Bushman},chr22:38004481-38029571:+,golgi-associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_1	SNU761_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	SMG6--GTPBP10	2	0	SMG6	1139	chr17:2206927:-	GTPBP10	52674	chr7:90001469:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	SMG6->Oncogene{Bushman},SMG6_nonsense_mediated_mRNA_decay_factor,chr17:1963133-2207065:-,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	SNU761_LIVER	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000537
SNU761_LIVER	SUCLG2--RP11-81N13.1	2	0	SUCLG2	2254	chr3:67659879:-	RP11-81N13.1	23581	chr3:67797195:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	LOCAL_INVERSION:-:+:[83],SUCLG2->chr3:67410884-67705038:-,succinate-CoA_ligase_GDP-forming_beta_subunit,RP11-81N13.1->chr3:67705121-67998137:+	SNU761_LIVER	1	1	0.0163	TRUE	0	1	0	2	0	TRUE	ACH-000537
SNU761_LIVER	RP11-353N4.6--SEC22B	1	2	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	149	202	0.02	0.01	0.0081	0.0163	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SNU761_LIVER	0.01	0.02	0.0244	FALSE	49	42	7	43	0	FALSE	ACH-000537
SNU761_LIVER	SLC16A12--LIPA	1	2	SLC16A12	5062	chr10:91222136:-	LIPA	18335	chr10:91172679:-	ONLY_REF_SPLICE	YES	15	0	0.17	1	0.0081	0.0163	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SNU761_LIVER	0.17	1	0.0244	FALSE	0	24	3	7	0	FALSE	ACH-000537
SNU761_LIVER	SLC16A12--LIPA	1	2	SLC16A12	5062	chr10:91222136:-	LIPA	24090	chr10:91053425:-	ONLY_REF_SPLICE	NO	15	4	0.17	0.43	0.0081	0.0163	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SNU761_LIVER	0.17	0.43	0.0244	FALSE	3	9	0	3	0	FALSE	ACH-000537
SNU761_LIVER	JAG1--PLCB1	1	1	JAG1	19109	chr20:10621761:-	PLCB1	29260	chr20:8608941:+	ONLY_REF_SPLICE	YES	241	2	0.01	0.5	0.0081	0.0081	JAG1->Oncogene{Bushman},chr20:10618332-10654694:-,chr20:10625847-10627014:-,jagged_1,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	SNU761_LIVER	0.01	0.5	0.0162	FALSE	0	0	0	1	0	FALSE	ACH-000537
SNU761_LIVER	LINC00623--SRGAP2B	1	1	LINC00623	2231	chr1:144340526:-	SRGAP2B	25557	chr1:144013901:+	ONLY_REF_SPLICE	YES	137	52	0.01	0.04	0.0081	0.0081	LINC00623->chr1:144275918-144341756:-,long_intergenic_non-protein_coding_RNA_623,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	SNU761_LIVER	0.01	0.04	0.0162	FALSE	0	0	0	1	0	FALSE	ACH-000537
SNU761_LIVER	MARCH8--FAF1	1	1	MARCH8	5934	chr10:46028558:-	FAF1	22573	chr1:51267349:-	ONLY_REF_SPLICE	YES	21	37	0.09	0.05	0.0081	0.0081	MARCH8->chr10:45950035-46090354:-,membrane_associated_ring-CH-type_finger_8,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	SNU761_LIVER	0.05	0.09	0.0162	TRUE	0	0	0	1	0	FALSE	ACH-000537
SNU761_LIVER	RP3-510D11.1--AHCYL1	1	1	RP3-510D11.1	3450	chr1:9242066:-	AHCYL1	9259	chr1:110551656:+	ONLY_REF_SPLICE	NO	0	206	1	0.01	0.0081	0.0081	RP3-510D11.1->chr1:9242066-9262678:-,AHCYL1->adenosylhomocysteinase_like_1,chr1:110527308-110566357:+	SNU761_LIVER	0.01	1	0.0162	FALSE	0	0	0	1	0	FALSE	ACH-000537
SNU761_LIVER	ZNF195--FANCI	1	1	ZNF195	11477	chr11:3383776:-	FANCI	53617	chr15:89856135:+	ONLY_REF_SPLICE	YES	40	59	0.05	0.03	0.0081	0.0081	ZNF195->chr11:3360491-3400448:-,zinc_finger_protein_195,FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+	SNU761_LIVER	0.03	0.05	0.0162	TRUE	0	0	0	1	0	FALSE	ACH-000537
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	ZNF83--SULT2B1	154	17	ZNF83	1054	chr19:53193696:-	SULT2B1	23742	chr19:49090486:+	ONLY_REF_SPLICE	YES	5	0	0.97	1	2.0176	0.2227	ZNF83->chr19:53097313-53193749:-,zinc_finger_protein_83,SULT2B1->chr19:49055332-49102682:+,sulfotransferase_family_2B_member_1	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.97	1	2.2403	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	KDM4C--RP11-204M4.2	142	51	KDM4C	2698	chr9:6758203:+	RP11-204M4.2	45593	chr9:41963942:-	ONLY_REF_SPLICE	YES	7	1	0.96	0.99	1.8604	0.6682	KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,RP11-204M4.2->chr9:41961615-42019580:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.96	0.99	2.5286	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	RAD54B--KIAA1429	53	4	RAD54B	1109	chr8:95487229:-	KIAA1429	41722	chr8:95518945:-	ONLY_REF_SPLICE	YES	1	30	0.98	0.66	0.6944	0.0524	LOCAL_REARRANGEMENT:-:[12584],RAD54B->RAD54_homolog_B_(S._cerevisiae),chr8:95384188-95487337:-,KIAA1429->KIAA1429,chr8:95499921-95565757:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.66	0.98	0.7468	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	36	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.4716	0.1572	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.98	1	0.6288	TRUE	508	994	45	981	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	23	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3013	0.0131	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.3144	FALSE	499	1288	110	792	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	19	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	208	0	0.09	1	0.2489	0.0131	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.09	1	0.262	TRUE	519	3926	326	965	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	17	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.2227	0.1048	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.3275	FALSE	499	1288	110	792	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	18	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	33	2	0.38	0.91	0.2358	0.0262	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.38	0.91	0.262	FALSE	59	21	0	114	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	ZNF415--CARD8	11	12	ZNF415	4705	chr19:53625915:-	CARD8	25463	chr19:48725112:-	ONLY_REF_SPLICE	YES	20	7	0.53	0.77	0.1441	0.1572	ZNF415->chr19:53611132-53636330:-,zinc_finger_protein_415,CARD8->Oncogene{Bushman},caspase_recruitment_domain_family_member_8,chr19:48684027-48759203:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.53	0.77	0.3013	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	RBMS3--ANO10	11	2	RBMS3	17979	chr3:29977687:+	ANO10	57903	chr3:43408466:-	ONLY_REF_SPLICE	YES	3	13	0.81	0.5	0.1441	0.0262	RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+,ANO10->anoctamin_10,chr3:43396351-43733086:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.5	0.81	0.1703	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	KRT8--CCL14	7	13	KRT8	1499	chr12:53343240:-	CCL14	17054	chr17:34328707:-	INCL_NON_REF_SPLICE	YES	1000	0	0.02	1	0.0917	0.1703	KRT8->chr12:53290977-53343738:-,keratin_8,CCL14->C-C_motif_chemokine_ligand_14,chr17:34310327-34329100:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.262	TRUE	0	0	0	1	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	9	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1179	0.0131	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.131	FALSE	499	1288	110	792	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	8	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	4	1	0.71	0.1048	0.0262	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.71	1	0.131	TRUE	477	1352	189	275	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	KRT8--CCL14	5	13	KRT8	3529	chr12:53320196:-	CCL14	17054	chr17:34328707:-	INCL_NON_REF_SPLICE	YES	31	0	0.37	1	0.0655	0.1703	KRT8->chr12:53290977-53343738:-,keratin_8,CCL14->C-C_motif_chemokine_ligand_14,chr17:34310327-34329100:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.37	1	0.2358	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	ANO10--RBMS3	6	1	ANO10	24430	chr3:43474103:-	RBMS3	50984	chr3:30029634:+	ONLY_REF_SPLICE	YES	13	4	0.35	0.64	0.0786	0.0131	ANO10->anoctamin_10,chr3:43396351-43733086:-,RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.35	0.64	0.0917	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	6	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	7518	20257	0	0	0.0786	0.0131	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0	0	0.0917	FALSE	183	104	9	328	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	6	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0786	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0786	FALSE	499	1288	110	792	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	ZNF415--CARD8	2	15	ZNF415	4963	chr19:53625657:-	CARD8	25463	chr19:48725112:-	ONLY_REF_SPLICE	YES	29	7	0.37	0.71	0.0262	0.1965	ZNF415->chr19:53611132-53636330:-,zinc_finger_protein_415,CARD8->Oncogene{Bushman},caspase_recruitment_domain_family_member_8,chr19:48684027-48759203:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.37	0.71	0.2227	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	RDH13--TSEN34	5	2	RDH13	9547	chr19:55568021:-	TSEN34	25260	chr19:54695572:+	ONLY_REF_SPLICE	YES	17	39	0.29	0.15	0.0655	0.0262	RDH13->chr19:55550476-55582659:-,retinol_dehydrogenase_13_(all-trans/9-cis),TSEN34->chr19:54693789-54697585:+,tRNA_splicing_endonuclease_subunit_34	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.15	0.29	0.0917	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	9	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.0393	0.1179	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.1572	FALSE	499	1288	110	792	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	4	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	67	12	0.11	0.4	0.0524	0.0524	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.11	0.4	0.1048	TRUE	267	562	48	632	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	5	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0655	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0655	FALSE	416	2512	207	587	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	4	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7606	20687	0	0	0.0524	0.0131	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0	0	0.0655	FALSE	183	104	9	328	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	5	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.0393	0.0655	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.73	1	0.1048	FALSE	499	1288	110	792	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	CAPZB--UCHL1-AS1	4	0	CAPZB	1137	chr1:19811930:-	UCHL1-AS1	21598	chr4:41223501:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0524	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,UCHL1-AS1->UCHL1_antisense_RNA_1_(head_to_head),chr4:41222091-41258744:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0524	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	3	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	33	2	0.15	0.75	0.0393	0.0393	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.15	0.75	0.0786	FALSE	59	21	0	114	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	NO	7111	17967	0	0	0.0393	0.0131	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0	0	0.0524	FALSE	183	104	9	328	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	VIM--TMSB4X	3	1	VIM	2162	chr10:17271419:+	TMSB4X	13357	chrX:12994379:+	INCL_NON_REF_SPLICE	YES	1564	91	0	0.04	0.0393	0.0131	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0	0.04	0.0524	FALSE	0	0	0	15	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.33	1	0.0262	0.0524	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.0786	FALSE	164	806	69	479	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	FGFR2--COL14A1	1	6	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	NO	1	7	0.88	0.5	0.0131	0.0786	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.5	0.88	0.0917	TRUE	0	0	0	32	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0.0131	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0393	FALSE	292	1546	117	613	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	CHID1--AP2A2	2	0	CHID1	11443	chr11:899340:-	AP2A2	37365	chr11:977095:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	LOCAL_INVERSION:-:+:[9836],CHID1->chitinase_domain_containing_1,chr11:867357-915058:-,AP2A2->adaptor_related_protein_complex_2_alpha_2_subunit,chr11:924894-1012239:+	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	PRR12--SLC6A16	2	0	PRR12	9866	chr19:50105175:+	SLC6A16	26602	chr19:49797810:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	PRR12->chr19:50094900-50129696:+,proline_rich_12,SLC6A16->chr19:49792895-49828482:-,solute_carrier_family_6_member_16	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	PRR12--SLC6A16	2	0	PRR12	9866	chr19:50105175:+	SLC6A16	27127	chr19:49797285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	PRR12->chr19:50094900-50129696:+,proline_rich_12,SLC6A16->chr19:49792895-49828482:-,solute_carrier_family_6_member_16	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	274	363	69	150	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	RP11-453F18__B.1--LCOR	2	0	RP11-453F18__B.1	2496	chrX:130959250:-	LCOR	29813	chr10:98718169:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	RP11-453F18__B.1->chrX:130836678-130964671:-,LCOR->chr10:98592017-98740800:+,ligand_dependent_nuclear_receptor_corepressor	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	KRT8--CCL14	1	1	KRT8	1499	chr12:53343240:-	CCL14	18306	chr17:34325961:-	ONLY_REF_SPLICE	YES	1000	10	0	0.17	0.0131	0.0131	KRT8->chr12:53290977-53343738:-,keratin_8,CCL14->C-C_motif_chemokine_ligand_14,chr17:34310327-34329100:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0	0.17	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0131	0.0131	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.25	1	0.0262	FALSE	125	705	46	456	0	FALSE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	PRICKLE2--MAGI1	1	1	PRICKLE2	1994	chr3:64430159:-	MAGI1	35559	chr3:65479306:-	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0131	0.0131	PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2,MAGI1->chr3:65339200-66024509:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_1	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000863
DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	SIK3--CCBL1	1	1	SIK3	1295	chr11:116968859:-	CCBL1	41155	chr9:131607690:-	ONLY_REF_SPLICE	YES	5	19	0.29	0.1	0.0131	0.0131	SIK3->Oncogene{Bushman},SIK_family_kinase_3,chr11:116714118-116969153:-,CCBL1->chr9:131595221-131644773:-	DBTRG05MG_CENTRAL_NERVOUS_SYSTEM	0.1	0.29	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000863
YH13_CENTRAL_NERVOUS_SYSTEM	SYT1--RP11-341G23.2	8	3	SYT1	11895	chr12:79441142:+	RP11-341G23.2	28632	chr12:104051458:-	INCL_NON_REF_SPLICE	YES	7	0	0.61	1	0.1691	0.0634	SYT1->chr12:79257773-79845788:+,synaptotagmin_1,RP11-341G23.2->chr12:104048558-104051773:-	YH13_CENTRAL_NERVOUS_SYSTEM	0.61	1	0.2325	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	8	3	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1691	0.0634	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.2325	TRUE	508	994	45	981	0	FALSE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	SYT1--RP11-341G23.3	6	2	SYT1	11895	chr12:79441142:+	RP11-341G23.3	28319	chr12:104063182:-	INCL_NON_REF_SPLICE	YES	7	0	0.53	1	0.1268	0.0423	SYT1->chr12:79257773-79845788:+,synaptotagmin_1,RP11-341G23.3->chr12:104062353-104063184:-	YH13_CENTRAL_NERVOUS_SYSTEM	0.53	1	0.1691	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	RP4-565E6.1--HYDIN	5	0	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1057	0	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.1057	TRUE	456	1387	91	133	0	FALSE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	ATP2B4--C15orf60	4	3	ATP2B4	18082	chr1:203689868:+	C15orf60	35212	chr15:73832826:+	ONLY_REF_SPLICE	YES	14	0	0.33	1	0.0845	0.0634	ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,C15orf60->chr15:73735499-73852355:+	YH13_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.1479	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	MRPS22--RIN3	4	0	MRPS22	6545	chr3:139000677:+	RIN3	24158	chr14:93022096:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0845	0	MRPS22->chr3:138724648-139076065:+,mitochondrial_ribosomal_protein_S22,RIN3->Ras_and_Rab_interactor_3,chr14:92980118-93155339:+	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	RBBP4--RTN4	4	0	RBBP4	11114	chr1:33146174:+	RTN4	24766	chr2:55277427:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	0	RBBP4->chr1:33116743-33151812:+,retinoblastoma_binding_protein_4,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	DNPH1--MT-RNR2	3	0	DNPH1	3377	chr6:43193423:-	MT-RNR2	6487	chrM:1724:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	DNPH1->2'-deoxynucleoside_5'-phosphate_N-hydrolase_1,chr6:43193367-43197222:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0634	FALSE	0	0	0	1	0	FALSE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	IFT52--RPL13AP5	3	0	IFT52	15873	chr20:42275645:+	RPL13AP5	19573	chr10:98510453:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	IFT52->chr20:42219571-42275936:+,intraflagellar_transport_52,RPL13AP5->chr10:98510045-98510675:+,ribosomal_protein_L13a_pseudogene_5	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	MAPK12--TMED10	3	0	MAPK12	6288	chr22:50693440:-	TMED10	18921	chr14:75643263:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	MAPK12->Oncogene{Bushman},chr22:50683879-50700254:-,mitogen-activated_protein_kinase_12,TMED10->chr14:75598173-75643334:-,transmembrane_p24_trafficking_protein_10	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	NLRC5--C4orf46	3	0	NLRC5	1111	chr16:57023507:+	C4orf46	57163	chr4:159590920:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0634	0	NLRC5->NLR_family,_CARD_domain_containing_5,chr16:57023397-57117443:+,C4orf46->chr4:159587831-159593407:-,chromosome_4_open_reading_frame_46	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	3	0	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0634	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0634	FALSE	7	44	2	41	0	FALSE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	PSMB8--VEPH1	3	0	PSMB8	1738	chr6:32811743:-	VEPH1	28004	chr3:157081261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	PSMB8->chr6:32808494-32812480:-,proteasome_subunit_beta_8,VEPH1->Oncogene{Bushman},chr3:156977531-157251408:-,ventricular_zone_expressed_PH_domain_containing_1	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	SOX9--ZNF71	3	0	SOX9	2792	chr17:70118952:+	ZNF71	14438	chr19:57132716:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	SOX9->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SRY-box_9,chr17:70117161-70122561:+,ZNF71->chr19:57106632-57137849:+,zinc_finger_protein_71	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	TNS1--MREG	3	0	TNS1	25441	chr2:218745621:-	MREG	61468	chr2:216811836:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0634	0	TNS1->chr2:218664512-218867718:-,tensin_1,MREG->chr2:216809213-216898819:-,melanoregulin	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0634	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	ATP2B4--C15orf60	1	4	ATP2B4	18082	chr1:203689868:+	C15orf60	34122	chr15:73766173:+	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0211	0.0845	ATP2B4->ATPase_plasma_membrane_Ca2+_transporting_4,chr1:203595689-203713209:+,C15orf60->chr15:73735499-73852355:+	YH13_CENTRAL_NERVOUS_SYSTEM	0.26	1	0.1056	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	CHD2--SPIN3	2	0	CHD2	6529	chr15:93444529:+	SPIN3	60438	chrX:57021382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SPIN3->chrX:57002803-57021970:-,spindlin_family_member_3	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	GALNT1--RAP1A	2	0	GALNT1	1746	chr18:33161826:+	RAP1A	25989	chr1:112233956:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	GALNT1->chr18:33161081-33291798:+,polypeptide_N-acetylgalactosaminyltransferase_1,RAP1A->Oncogene{Bushman},RAP1A,_member_of_RAS_oncogene_family,chr1:112084840-112259313:+	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	GGCT--AHR	2	0	GGCT	3120	chr7:30544185:-	AHR	13481	chr7:17362125:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	GGCT->chr7:30536237-30591095:-,gamma-glutamylcyclotransferase,AHR->aryl_hydrocarbon_receptor,chr7:17338246-17385776:+	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	MARK3--EIF5	2	0	MARK3	14669	chr14:103932779:+	EIF5	38544	chr14:103807300:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},LOCAL_REARRANGEMENT:+:[40367],MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3,EIF5->chr14:103799881-103811362:+,eukaryotic_translation_initiation_factor_5	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	MIR29B1--AGK	2	0	MIR29B1	2201	chr7:130596869:-	AGK	29242	chr7:141336760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	MIR29B1->chr7:130561495-130598069:-,microRNA_29b-1,AGK->acylglycerol_kinase,chr7:141250989-141355044:+	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	477	1352	189	275	0	FALSE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	FALSE	515	4851	409	746	0	FALSE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	SNX13--TAX1BP1	2	0	SNX13	1218	chr7:17979907:-	TAX1BP1	53382	chr7:27824782:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	SNX13->chr7:17830385-17980124:-,sorting_nexin_13,TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	YWHAE--CRK	2	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	6	50	7	115	0	FALSE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	ZNF33A--TMEFF1	2	0	ZNF33A	3703	chr10:38306314:+	TMEFF1	18422	chr9:103261047:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	ZNF33A->chr10:38299578-38354016:+,zinc_finger_protein_33A,TMEFF1->chr9:103204560-103339918:+,transmembrane_protein_with_EGF_like_and_two_follistatin_like_domains_1	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000469
YH13_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0.0211	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	YH13_CENTRAL_NERVOUS_SYSTEM	1	1	0.0422	FALSE	164	806	69	479	0	FALSE	ACH-000469
SF295_CENTRAL_NERVOUS_SYSTEM	TFG--GPR128	130	105	TFG	5019	chr3:100438902:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	336	0	0.41	1	1.4195	1.1466	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	SF295_CENTRAL_NERVOUS_SYSTEM	0.41	1	2.5661	TRUE	12	123	7	17	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	73	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7971	0.273	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	1.0701	TRUE	508	994	45	981	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	PAMR1--SLC1A2	47	17	PAMR1	3868	chr11:35547061:-	SLC1A2	33039	chr11:35314067:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.5132	0.1856	NEIGHBORS[11760],PAMR1->chr11:35453370-35551848:-,peptidase_domain_containing_associated_with_muscle_regeneration_1,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SF295_CENTRAL_NERVOUS_SYSTEM	0.98	1	0.6988	FALSE	0	0	0	1	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	42	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	285	3	0.13	0.94	0.4586	0.0218	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SF295_CENTRAL_NERVOUS_SYSTEM	0.13	0.94	0.4804	TRUE	519	3926	326	965	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	36	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3931	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.3931	TRUE	7	10	0	216	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	AP001462.6--SUV420H1	26	23	AP001462.6	1190	chr11:64546615:+	SUV420H1	12297	chr11:67942650:-	INCL_NON_REF_SPLICE	YES	1	66	0.98	0.43	0.2839	0.2512	AP001462.6->chr11:64546426-64546877:+,SUV420H1->chr11:67922330-67981295:-	SF295_CENTRAL_NERVOUS_SYSTEM	0.43	0.98	0.5351	TRUE	0	0	0	1	0	TRUE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	MIPEPP3--ABHD12	29	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3167	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.3167	TRUE	64	202	9	44	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	27	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2948	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.2948	TRUE	402	216	10	229	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	24	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	1	27	0.96	0.49	0.2621	0.0218	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SF295_CENTRAL_NERVOUS_SYSTEM	0.49	0.96	0.2839	TRUE	465	1949	224	605	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	21	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	1	1	0.96	0.96	0.2293	0.0218	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SF295_CENTRAL_NERVOUS_SYSTEM	0.96	0.96	0.2511	TRUE	458	1351	185	561	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	PAMR1--SLC1A2	18	11	PAMR1	3868	chr11:35547061:-	SLC1A2	34273	chr11:35308498:-	ONLY_REF_SPLICE	YES	1	11	0.97	0.72	0.1966	0.1201	NEIGHBORS[11760],PAMR1->chr11:35453370-35551848:-,peptidase_domain_containing_associated_with_muscle_regeneration_1,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SF295_CENTRAL_NERVOUS_SYSTEM	0.72	0.97	0.3167	FALSE	0	0	0	1	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	53	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.0437	0.5787	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SF295_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.6224	FALSE	344	826	44	306	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	15	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1638	0.0328	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.1966	FALSE	462	80	0	856	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	11	18	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	64	61	0.31	0.32	0.1201	0.1966	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SF295_CENTRAL_NERVOUS_SYSTEM	0.31	0.32	0.3167	TRUE	267	562	48	632	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	PKM--PPIA	13	9	PKM	16758	chr15:72494872:-	PPIA	23273	chr7:44836291:+	INCL_NON_REF_SPLICE	YES	8098	0	0	1	0.142	0.0983	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	SF295_CENTRAL_NERVOUS_SYSTEM	0	1	0.2403	TRUE	0	0	0	18	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	44	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	121	0	0.28	1	0.0437	0.4805	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SF295_CENTRAL_NERVOUS_SYSTEM	0.28	1	0.5242	FALSE	344	827	44	306	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	13	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	57	1488	0.2	0.01	0.142	0.0109	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SF295_CENTRAL_NERVOUS_SYSTEM	0.01	0.2	0.1529	TRUE	0	0	0	434	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	9	15	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	60	61	0.29	0.28	0.0983	0.1638	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SF295_CENTRAL_NERVOUS_SYSTEM	0.28	0.29	0.2621	TRUE	267	562	48	632	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	10	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1092	0.0437	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.1529	TRUE	477	1352	189	275	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	8	5	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.0874	0.0546	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SF295_CENTRAL_NERVOUS_SYSTEM	0.81	1	0.142	FALSE	292	1546	117	613	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	8	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3941	0	0	1	0.0874	0.0109	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SF295_CENTRAL_NERVOUS_SYSTEM	0	1	0.0983	FALSE	13	9	0	364	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	8	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3975	0	0	1	0.0874	0.0109	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SF295_CENTRAL_NERVOUS_SYSTEM	0	1	0.0983	FALSE	13	9	0	364	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	21	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8643	0	0	1	0.0328	0.2293	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SF295_CENTRAL_NERVOUS_SYSTEM	0	1	0.2621	FALSE	328	800	43	304	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	PAMR1--SLC1A2	3	21	PAMR1	4975	chr11:35534919:-	SLC1A2	33039	chr11:35314067:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.0328	0.2293	NEIGHBORS[11760],PAMR1->chr11:35453370-35551848:-,peptidase_domain_containing_associated_with_muscle_regeneration_1,SLC1A2->chr11:35272753-35441610:-,solute_carrier_family_1_member_2	SF295_CENTRAL_NERVOUS_SYSTEM	0.96	1	0.2621	FALSE	0	0	0	1	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	6	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0655	0.0983	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF295_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.1638	FALSE	515	4851	409	746	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	7	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	9655	19549	0	0	0.0764	0.0109	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SF295_CENTRAL_NERVOUS_SYSTEM	0	0	0.0873	FALSE	183	104	9	328	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	CALM3--MT-ND4L	6	4	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1662	0	0.01	1	0.0655	0.0437	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SF295_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.1092	FALSE	1	1	0	107	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	ITGA3--TUBB	5	7	ITGA3	12301	chr17:48153818:+	TUBB	28691	chr6:30691270:+	INCL_NON_REF_SPLICE	YES	2342	5383	0.01	0	0.0546	0.0764	ITGA3->chr17:48133332-48167845:+,integrin_subunit_alpha_3,TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I	SF295_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.131	TRUE	0	0	0	5	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	8	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	115	0	0.09	1	0.0437	0.0874	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SF295_CENTRAL_NERVOUS_SYSTEM	0.09	1	0.1311	FALSE	344	827	44	306	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	TGFBI--MT-ATP8	6	0	TGFBI	6303	chr5:135382655:+	MT-ATP8	22552	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0655	0	TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0655	FALSE	0	0	0	1	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	10	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	55	0	0.19	1	0.0328	0.1092	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SF295_CENTRAL_NERVOUS_SYSTEM	0.19	1	0.142	FALSE	344	826	44	306	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	PKM--PPIA	3	10	PKM	16753	chr15:72494877:-	PPIA	23268	chr7:44836286:+	INCL_NON_REF_SPLICE	YES	8112	0	0	1	0.0328	0.1092	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	SF295_CENTRAL_NERVOUS_SYSTEM	0	1	0.142	TRUE	0	0	0	18	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	HPCAL1--MT-CO3	5	0	HPCAL1	5340	chr2:10537030:+	MT-CO3	17735	chrM:9278:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0546	0	HPCAL1->chr2:10443015-10567743:+,hippocalcin_like_1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0546	FALSE	0	0	0	5	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	4	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0437	0.0328	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0765	FALSE	462	80	0	856	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	4	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9824	20162	0	0	0.0437	0.0218	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SF295_CENTRAL_NERVOUS_SYSTEM	0	0	0.0655	FALSE	183	104	9	328	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	RP11-640M9.1--SEC22B	2	10	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	25754	chr1:145103908:+	ONLY_REF_SPLICE	YES	47	771	0.2	0.02	0.0218	0.1092	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SF295_CENTRAL_NERVOUS_SYSTEM	0.02	0.2	0.131	TRUE	14	18	7	11	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0218	0.1092	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF295_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.131	FALSE	275	511	55	178	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	SLC1A5--MT-ND4L	4	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	910	0	0.01	1	0.0437	0.0218	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SF295_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0655	FALSE	0	0	0	189	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	EIF1--PPIA	4	1	EIF1	1107	chr17:39845243:+	PPIA	7809	chr7:44836303:+	INCL_NON_REF_SPLICE	YES	55	0	0.08	1	0.0437	0.0109	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	SF295_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.0546	TRUE	0	0	0	7	0	TRUE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0437	0.0109	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0546	FALSE	344	821	44	306	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	MYH9--MT2A	3	5	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	886	4	0.01	0.67	0.0328	0.0546	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SF295_CENTRAL_NERVOUS_SYSTEM	0.01	0.67	0.0874	FALSE	0	0	0	24	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	9	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	16	0	0.41	1	0.0218	0.0983	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SF295_CENTRAL_NERVOUS_SYSTEM	0.41	1	0.1201	FALSE	164	806	69	479	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	EXPH5--TEX12	4	0	EXPH5	1321	chr11:108464145:-	TEX12	24938	chr11:112041142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0437	0	EXPH5->chr11:108376158-108464465:-,exophilin_5,TEX12->chr11:112038095-112043282:+,testis_expressed_12	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0437	TRUE	0	0	0	1	0	TRUE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	EXPH5--TEX12	4	0	EXPH5	1321	chr11:108464145:-	TEX12	23851	chr11:112039968:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0437	0	EXPH5->chr11:108376158-108464465:-,exophilin_5,TEX12->chr11:112038095-112043282:+,testis_expressed_12	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0437	TRUE	0	0	0	1	0	TRUE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTG1	4	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0437	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0437	TRUE	0	0	0	64	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	VIM--ACTB	4	0	VIM	2136	chr10:17271393:+	ACTB	15629	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0437	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0437	TRUE	0	0	0	9	0	TRUE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3129	20557	0	0	0.0328	0.0328	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SF295_CENTRAL_NERVOUS_SYSTEM	0	0	0.0656	FALSE	183	104	9	328	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	7	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.43	1	0.0218	0.0764	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SF295_CENTRAL_NERVOUS_SYSTEM	0.43	1	0.0982	FALSE	125	705	46	456	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	11	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0109	0.1201	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.131	FALSE	192	492	57	212	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	VIM--ACTB	3	3	VIM	2166	chr10:17271423:+	ACTB	15680	chr7:5570172:-	INCL_NON_REF_SPLICE	YES	7640	3	0	0.67	0.0328	0.0328	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SF295_CENTRAL_NERVOUS_SYSTEM	0	0.67	0.0656	FALSE	0	0	0	9	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	3	2	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	4264	206	0	0.02	0.0328	0.0218	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SF295_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0546	FALSE	0	20	0	35	2	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	ALDOA--RP11-742N3.1	3	1	ALDOA	7439	chr16:30077211:+	RP11-742N3.1	15027	chr11:82400591:+	INCL_NON_REF_SPLICE	YES	2951	0	0	1	0.0328	0.0109	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,RP11-742N3.1->chr11:82400571-82400944:+	SF295_CENTRAL_NERVOUS_SYSTEM	0	1	0.0437	FALSE	0	0	0	1	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	57	1369	0.07	0	0.0328	0.0109	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SF295_CENTRAL_NERVOUS_SYSTEM	0	0.07	0.0437	FALSE	0	0	0	434	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	EIF1--RPS28	3	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0328	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0328	TRUE	0	0	0	81	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	EIF1--RPS28	3	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0328	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0328	TRUE	0	0	0	81	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTG1	3	0	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0328	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0328	TRUE	0	0	0	64	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0328	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0328	TRUE	22	156	2	142	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	2	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	107	0.71	0.04	0.0218	0.0328	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SF295_CENTRAL_NERVOUS_SYSTEM	0.04	0.71	0.0546	FALSE	16	356	14	466	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	2	2	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	4639	206	0	0.02	0.0218	0.0218	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SF295_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0436	FALSE	0	7	0	19	1	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	CLIC1--RPL7	2	2	CLIC1	4985	chr6:31701613:-	RPL7	14663	chr8:74203896:-	ONLY_REF_SPLICE	YES	2763	3780	0	0	0.0218	0.0218	CLIC1->chloride_intracellular_channel_1,chr6:31698358-31707540:-,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	SF295_CENTRAL_NERVOUS_SYSTEM	0	0	0.0436	FALSE	0	0	0	12	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	DHX38--PTMA	2	1	DHX38	14997	chr16:72142824:+	PTMA	25875	chr2:232576058:+	ONLY_REF_SPLICE	YES	176	5347	0.02	0	0.0218	0.0109	DHX38->DEAH-box_helicase_38,chr16:72127461-72146811:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SF295_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0327	FALSE	0	0	0	1	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	FRS2--CPSF6	2	1	FRS2	1182	chr12:69864310:+	CPSF6	24878	chr12:69644909:+	ONLY_REF_SPLICE	YES	28	145	0.1	0.02	0.0218	0.0109	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6	SF295_CENTRAL_NERVOUS_SYSTEM	0.02	0.1	0.0327	TRUE	0	0	0	1	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	CTC-329D1.2--UIMC1	2	0	CTC-329D1.2	1257	chr5:139780696:-	UIMC1	16591	chr5:176385155:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	CTC-329D1.2->chr5:139750476-139780952:-,UIMC1->chr5:176332006-176449634:-,ubiquitin_interaction_motif_containing_1	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	1	4	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	80	0	0.06	1	0.0109	0.0437	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SF295_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0546	FALSE	56	216	12	147	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	RPSAP52--HMGA2	2	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SF295_CENTRAL_NERVOUS_SYSTEM	1	1	0.0218	FALSE	0	59	0	125	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	2	1	0.67	0.0109	0.0328	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SF295_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.0437	FALSE	416	2512	207	587	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	1	3	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	55	0.8	0.07	0.0109	0.0328	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SF295_CENTRAL_NERVOUS_SYSTEM	0.07	0.8	0.0437	FALSE	141	264	50	91	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	1	3	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	NO	1	55	0.8	0.07	0.0109	0.0328	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SF295_CENTRAL_NERVOUS_SYSTEM	0.07	0.8	0.0437	FALSE	49	120	16	70	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	RP11-640M9.1--SEC22B	1	3	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	NO	47	798	0.08	0	0.0109	0.0328	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SF295_CENTRAL_NERVOUS_SYSTEM	0	0.08	0.0437	FALSE	20	16	6	14	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	RP11-640M9.1--SEC22B	1	3	RP11-640M9.1	3158	chr1:144519813:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	NO	46	798	0.08	0	0.0109	0.0328	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SF295_CENTRAL_NERVOUS_SYSTEM	0	0.08	0.0437	FALSE	20	16	6	14	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	1	2	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	175	550	0.02	0.01	0.0109	0.0218	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SF295_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0327	FALSE	38	10	2	29	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	4316	217	0	0.01	0.0109	0.0218	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SF295_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0327	FALSE	6	50	7	115	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	AP3S1--COMMD10	1	1	AP3S1	1626	chr5:115177803:+	COMMD10	19286	chr5:115426776:+	ONLY_REF_SPLICE	YES	460	424	0	0	0.0109	0.0109	GTEx&tcga_normals:14/3694=0.38%,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+,COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+	SF295_CENTRAL_NERVOUS_SYSTEM	0	0	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	AP3S1--COMMD10	1	1	AP3S1	5345	chr5:115205825:+	COMMD10	21553	chr5:115469765:+	ONLY_REF_SPLICE	NO	560	229	0	0.01	0.0109	0.0109	GTEx&tcga_normals:14/3694=0.38%,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+,COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+	SF295_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0218	FALSE	0	0	0	2	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	1	1	CD44	6502	chr11:35211612:+	PDHX	39859	chr11:34999671:+	ONLY_REF_SPLICE	YES	4264	161	0	0.01	0.0109	0.0109	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	SF295_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0218	FALSE	0	0	0	3	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	COL6A3--CCDC130	1	1	COL6A3	14866	chr2:238280375:-	CCDC130	68242	chr19:13873404:+	ONLY_REF_SPLICE	YES	1073	195	0	0.01	0.0109	0.0109	COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3,CCDC130->chr19:13842574-13874110:+,coiled-coil_domain_containing_130	SF295_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	198	1	0.01	0.0109	0.0109	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SF295_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0218	FALSE	347	1186	183	220	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	EPHB2--HNRNPR	1	1	EPHB2	5022	chr1:23111569:+	HNRNPR	28915	chr1:23665101:-	ONLY_REF_SPLICE	YES	221	343	0.01	0.01	0.0109	0.0109	EPHB2->EPH_receptor_B2,chr1:23037332-23241818:+,HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R	SF295_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	GPD2--PSMD14	1	1	GPD2	2224	chr2:157293025:+	PSMD14	33422	chr2:162223989:+	ONLY_REF_SPLICE	NO	102	855	0.02	0	0.0109	0.0109	GPD2->chr2:157291802-157470247:+,glycerol-3-phosphate_dehydrogenase_2,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	SF295_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	PDE4D--DEPDC1B	1	1	PDE4D	13468	chr5:59284315:-	DEPDC1B	63202	chr5:59943360:-	ONLY_REF_SPLICE	YES	9	152	0.18	0.01	0.0109	0.0109	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|LUSC:1|PRAD:2],LOCAL_REARRANGEMENT:-:[74792],PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-	SF295_CENTRAL_NERVOUS_SYSTEM	0.01	0.18	0.0218	FALSE	0	0	0	2	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	PSMC2--DNAJC2	1	1	PSMC2	3155	chr7:102988228:+	DNAJC2	22529	chr7:102968201:-	ONLY_REF_SPLICE	YES	470	265	0	0.01	0.0109	0.0109	NEIGHBORS_OVERLAP:+:-:[619],PSMC2->chr7:102984701-103009842:+,proteasome_26S_subunit,_ATPase_2,DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-	SF295_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	SPOP--CLTC	1	1	SPOP	1302	chr17:47755295:-	CLTC	24502	chr17:57721637:+	ONLY_REF_SPLICE	YES	127	1049	0.02	0	0.0109	0.0109	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain	SF295_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	TCFL5--OVOL2	1	1	TCFL5	5786	chr20:61485368:-	OVOL2	21552	chr20:17937681:-	ONLY_REF_SPLICE	YES	49	0	0.04	1	0.0109	0.0109	TCFL5->chr20:61472467-61493115:-,transcription_factor_like_5,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	SF295_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	UNC45A--PRC1	1	1	UNC45A	7627	chr15:91483703:+	PRC1	27230	chr15:91525211:-	ONLY_REF_SPLICE	NO	194	674	0.01	0	0.0109	0.0109	LOCAL_INVERSION:+:-:[11947],UNC45A->chr15:91473410-91497323:+,unc-45_myosin_chaperone_A,PRC1->chr15:91509270-91538859:-,protein_regulator_of_cytokinesis_1	SF295_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000376
SF295_CENTRAL_NERVOUS_SYSTEM	UNC45A--PRC1	1	1	UNC45A	9776	chr15:91486312:+	PRC1	27230	chr15:91525211:-	ONLY_REF_SPLICE	YES	155	674	0.01	0	0.0109	0.0109	LOCAL_INVERSION:+:-:[11947],UNC45A->chr15:91473410-91497323:+,unc-45_myosin_chaperone_A,PRC1->chr15:91509270-91538859:-,protein_regulator_of_cytokinesis_1	SF295_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000376
OAW42_OVARY	AP2B1--RP11-104J23.1	116	83	AP2B1	28109	chr17:34037339:+	RP11-104J23.1	38859	chr17:34337060:+	ONLY_REF_SPLICE	YES	484	0	0.29	1	1.1646	0.8333	AP2B1->adaptor_related_protein_complex_2_beta_1_subunit,chr17:33905065-34053436:+,RP11-104J23.1->chr17:34328458-34338658:+	OAW42_OVARY	0.29	1	1.9979	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	PSMD14--MFSD11	90	55	PSMD14	2882	chr2:162173080:+	MFSD11	34087	chr17:74763468:+	ONLY_REF_SPLICE	YES	365	45	0.28	0.76	0.9035	0.5522	PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14,MFSD11->chr17:74731947-74777531:+,major_facilitator_superfamily_domain_containing_11	OAW42_OVARY	0.28	0.76	1.4557	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	AGPAT3--XXbac-B33L19.4	76	25	AGPAT3	5489	chr21:45323900:+	XXbac-B33L19.4	33242	chr22:20331888:-	ONLY_REF_SPLICE	YES	82	0	0.55	1	0.763	0.251	AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+,XXbac-B33L19.4->chr22:20330726-20331888:-	OAW42_OVARY	0.55	1	1.014	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	RP11-381N20.2--RP11-93L9.1	54	57	RP11-381N20.2	2449	chr4:124418099:+	RP11-93L9.1	7606	chr4:124573942:+	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.5421	0.5722	RP11-381N20.2->chr4:124411423-124443261:+,RP11-93L9.1->chr4:124571422-124851561:+	OAW42_OVARY	0.99	1	1.1143	TRUE	0	1	0	1	1	TRUE	ACH-000704
OAW42_OVARY	TIMM23B--LINC00843	55	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5522	0.2911	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OAW42_OVARY	1	1	0.8433	TRUE	508	994	45	981	0	FALSE	ACH-000704
OAW42_OVARY	MT-TA--MT-TC	48	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4819	0.0301	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OAW42_OVARY	1	1	0.512	FALSE	462	80	0	856	0	FALSE	ACH-000704
OAW42_OVARY	METTL10--FAM175B	35	30	METTL10	4555	chr10:126463244:-	FAM175B	20729	chr10:126517325:+	ONLY_REF_SPLICE	YES	109	111	0.37	0.37	0.3514	0.3012	LOCAL_INVERSION:-:+:[9915],METTL10->chr10:126436718-126480439:-,methyltransferase_like_10,FAM175B->chr10:126490354-126525239:+,family_with_sequence_similarity_175_member_B	OAW42_OVARY	0.37	0.37	0.6526	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	RP11-381N20.2--RP11-93L9.1	25	53	RP11-381N20.2	2449	chr4:124418099:+	RP11-93L9.1	7610	chr4:124573946:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.251	0.5321	RP11-381N20.2->chr4:124411423-124443261:+,RP11-93L9.1->chr4:124571422-124851561:+	OAW42_OVARY	0.99	1	0.7831	TRUE	0	1	0	1	1	TRUE	ACH-000704
OAW42_OVARY	CSNK1G2--TRAF7	33	3	CSNK1G2	1230	chr19:1941417:+	TRAF7	25917	chr16:2225112:+	ONLY_REF_SPLICE	YES	0	258	1	0.12	0.3313	0.0301	CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,TRAF7->Oncogene{Bushman},TNF_receptor_associated_factor_7,chr16:2205699-2228130:+	OAW42_OVARY	0.12	1	0.3614	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	TIMM23--RP11-464F9.1	27	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	525	3	0.06	0.91	0.2711	0.0502	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OAW42_OVARY	0.06	0.91	0.3213	TRUE	519	3926	326	965	0	FALSE	ACH-000704
OAW42_OVARY	MT-ND4--MT-ND4L	5	74	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	12	0	0.87	1	0.0502	0.7429	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OAW42_OVARY	0.87	1	0.7931	FALSE	344	826	44	306	0	FALSE	ACH-000704
OAW42_OVARY	MT-ND4--MT-ND4L	4	71	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	6	0	0.93	1	0.0402	0.7128	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OAW42_OVARY	0.93	1	0.753	FALSE	344	826	44	306	0	FALSE	ACH-000704
OAW42_OVARY	MT-ND6--MT-TE	21	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2108	0.01	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OAW42_OVARY	1	1	0.2208	FALSE	499	1288	110	792	0	FALSE	ACH-000704
OAW42_OVARY	MIR137HG--DPYD	19	6	MIR137HG	3106	chr1:98511564:-	DPYD	31628	chr1:97915779:-	ONLY_REF_SPLICE	YES	6	49	0.81	0.34	0.1907	0.0602	NEIGHBORS[66951],MIR137HG->MIR137_host_gene,chr1:98453556-98515419:-,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	OAW42_OVARY	0.34	0.81	0.2509	FALSE	0	0	0	1	0	FALSE	ACH-000704
OAW42_OVARY	MT-ND4--MT-ND4L	7	53	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	5052	0	0.01	1	0.0703	0.5321	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OAW42_OVARY	0.01	1	0.6024	FALSE	344	827	44	306	0	FALSE	ACH-000704
OAW42_OVARY	MT-ND6--MT-TE	18	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.84	1	0.1807	0.0301	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OAW42_OVARY	0.84	1	0.2108	FALSE	499	1288	110	792	0	FALSE	ACH-000704
OAW42_OVARY	BCL7A--WDR66	16	7	BCL7A	5941	chr12:122473333:+	WDR66	26546	chr12:122386890:+	ONLY_REF_SPLICE	YES	106	6	0.18	0.79	0.1606	0.0703	LOCAL_REARRANGEMENT:+:[15495],BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+,WDR66->WD_repeat_domain_66,chr12:122355768-122441833:+	OAW42_OVARY	0.18	0.79	0.2309	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	MT-ND4--MT-ND4L	3	50	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	6	0	0.9	1	0.0301	0.502	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OAW42_OVARY	0.9	1	0.5321	FALSE	344	826	44	306	0	FALSE	ACH-000704
OAW42_OVARY	MT-ND4--MT-ND4L	4	41	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	1	0.92	0.98	0.0402	0.4116	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OAW42_OVARY	0.92	0.98	0.4518	FALSE	344	821	44	306	0	FALSE	ACH-000704
OAW42_OVARY	MT-ND6--MT-TE	12	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1205	0.0502	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OAW42_OVARY	1	1	0.1707	FALSE	499	1288	110	792	0	FALSE	ACH-000704
OAW42_OVARY	SPAG1--VPS13B	13	1	SPAG1	12651	chr8:101225656:+	VPS13B	89867	chr8:100847425:+	ONLY_REF_SPLICE	YES	14	23	0.5	0.38	0.1305	0.01	SPAG1->chr8:101170134-101271506:+,sperm_associated_antigen_1,VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast)	OAW42_OVARY	0.38	0.5	0.1405	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	MT-TA--MT-TC	12	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1205	0.0402	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OAW42_OVARY	1	1	0.1607	FALSE	462	80	0	856	0	FALSE	ACH-000704
OAW42_OVARY	RP11-123O10.4--GRIP1	11	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1104	0.0201	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OAW42_OVARY	1	1	0.1305	FALSE	416	2512	207	587	0	FALSE	ACH-000704
OAW42_OVARY	C15orf57--CBX3	8	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	87	71	0.19	0.23	0.0803	0.1305	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OAW42_OVARY	0.19	0.23	0.2108	TRUE	267	562	48	632	0	FALSE	ACH-000704
OAW42_OVARY	MT-ND4--MT-ND4L	5	25	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	16	0	0.65	1	0.0502	0.251	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OAW42_OVARY	0.65	1	0.3012	FALSE	344	826	44	306	0	FALSE	ACH-000704
OAW42_OVARY	MT-TA--MT-TC	9	2	MT-TA	1049	chrM:5607:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0904	0.0201	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OAW42_OVARY	1	1	0.1105	FALSE	462	80	0	856	0	FALSE	ACH-000704
OAW42_OVARY	MT-ND4--MT-ND4L	3	25	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	28	0	0.5	1	0.0301	0.251	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OAW42_OVARY	0.5	1	0.2811	FALSE	344	827	44	306	0	FALSE	ACH-000704
OAW42_OVARY	MT-ND6--MT-TE	8	5	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.76	1	0.0803	0.0502	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OAW42_OVARY	0.76	1	0.1305	FALSE	499	1288	110	792	0	FALSE	ACH-000704
OAW42_OVARY	RP11-381N20.2--RP11-93L9.1	5	17	RP11-381N20.2	2449	chr4:124418099:+	RP11-93L9.1	8722	chr4:124582908:+	ONLY_REF_SPLICE	YES	1	8	0.96	0.73	0.0502	0.1707	RP11-381N20.2->chr4:124411423-124443261:+,RP11-93L9.1->chr4:124571422-124851561:+	OAW42_OVARY	0.73	0.96	0.2209	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	KDM1A--LMNB2	9	0	KDM1A	8985	chr1:23384052:+	LMNB2	33232	chr19:2432485:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0904	0	KDM1A->chr1:23345941-23410182:+,lysine_demethylase_1A,LMNB2->chr19:2427636-2456994:-,lamin_B2	OAW42_OVARY	1	1	0.0904	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	ACAP2--XXYLT1	7	7	ACAP2	1284	chr3:195163524:-	XXYLT1	60126	chr3:194790840:-	ONLY_REF_SPLICE	YES	31	129	0.31	0.1	0.0703	0.0703	NEIGHBORS[3569],ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-,XXYLT1->Oncogene{Bushman},chr3:194789008-194991896:-,xyloside_xylosyltransferase_1	OAW42_OVARY	0.1	0.31	0.1406	FALSE	0	1	0	1	0	FALSE	ACH-000704
OAW42_OVARY	C15orf57--CBX3	6	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	82	74	0.17	0.19	0.0602	0.1104	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OAW42_OVARY	0.17	0.19	0.1706	TRUE	267	562	48	632	0	FALSE	ACH-000704
OAW42_OVARY	UPK3B--MT-CO3	7	4	UPK3B	5486	chr7:76144431:+	MT-CO3	12256	chrM:9207:+	INCL_NON_REF_SPLICE	YES	3970	0	0	1	0.0703	0.0402	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OAW42_OVARY	0	1	0.1105	FALSE	0	0	0	3	0	FALSE	ACH-000704
OAW42_OVARY	ZNF619--ADAMTS9	6	6	ZNF619	3733	chr3:40524195:+	ADAMTS9	15780	chr3:64644467:-	ONLY_REF_SPLICE	YES	7	93	0.63	0.11	0.0602	0.0602	{Klijn_CCL:Ovary=1},ZNF619->chr3:40518604-40531727:+,zinc_finger_protein_619,ADAMTS9->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_9,chr3:64501333-64673676:-	OAW42_OVARY	0.11	0.63	0.1204	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	MT-ND4--MT-ND4L	4	13	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	4	0	0.81	1	0.0402	0.1305	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OAW42_OVARY	0.81	1	0.1707	FALSE	344	821	44	306	0	FALSE	ACH-000704
OAW42_OVARY	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OAW42_OVARY	1	1	0.0703	FALSE	462	80	0	856	0	FALSE	ACH-000704
OAW42_OVARY	MT-ND4--MT-ND4L	3	15	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	15	0	0.55	1	0.0301	0.1506	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OAW42_OVARY	0.55	1	0.1807	FALSE	344	826	44	306	0	FALSE	ACH-000704
OAW42_OVARY	DIP2C--SFMBT2	4	10	DIP2C	1250	chr10:735434:-	SFMBT2	57908	chr10:7327916:-	ONLY_REF_SPLICE	YES	18	0	0.44	1	0.0402	0.1004	{Klijn_CCL:Ovary=1},DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,SFMBT2->Oncogene{Bushman},Scm-like_with_four_mbt_domains_2,chr10:7200586-7453450:-	OAW42_OVARY	0.44	1	0.1406	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	MT-ND4--MT-ND4L	3	14	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	14	0	0.55	1	0.0301	0.1406	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OAW42_OVARY	0.55	1	0.1707	FALSE	344	826	44	306	0	FALSE	ACH-000704
OAW42_OVARY	MT-ND6--MT-TE	6	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0602	0.01	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OAW42_OVARY	1	1	0.0702	FALSE	499	1288	110	792	0	FALSE	ACH-000704
OAW42_OVARY	AP000525.9--LA16c-60G3.6	6	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0602	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	OAW42_OVARY	1	1	0.0602	TRUE	0	42	0	133	42	FALSE	ACH-000704
OAW42_OVARY	RP11-96H19.1--RP11-446N19.1	4	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.0402	0.0803	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OAW42_OVARY	0.8	1	0.1205	FALSE	515	4851	409	746	0	FALSE	ACH-000704
OAW42_OVARY	MT-ND4--MT-ND4L	4	7	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	15	0	0.42	1	0.0402	0.0703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OAW42_OVARY	0.42	1	0.1105	FALSE	344	826	44	306	0	FALSE	ACH-000704
OAW42_OVARY	MT-ND4--MT-ND4L	4	7	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	13	0	0.46	1	0.0402	0.0703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OAW42_OVARY	0.46	1	0.1105	FALSE	344	827	44	306	0	FALSE	ACH-000704
OAW42_OVARY	ZDHHC18--PIGV	4	7	ZDHHC18	8188	chr1:27180316:+	PIGV	17525	chr1:27117250:+	ONLY_REF_SPLICE	YES	125	11	0.08	0.5	0.0402	0.0703	LOCAL_REARRANGEMENT:+:[28312],ZDHHC18->Oncogene{Bushman},chr1:27153201-27184093:+,zinc_finger_DHHC-type_containing_18,PIGV->chr1:27113963-27124889:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_V	OAW42_OVARY	0.08	0.5	0.1105	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	RP11-96H19.1--RP11-446N19.1	3	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.0301	0.0904	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OAW42_OVARY	0.86	1	0.1205	FALSE	467	2173	244	435	0	FALSE	ACH-000704
OAW42_OVARY	METTL10--FAM175B	2	11	METTL10	3332	chr10:126477608:-	FAM175B	20729	chr10:126517325:+	ONLY_REF_SPLICE	YES	139	111	0.09	0.1	0.0201	0.1104	LOCAL_INVERSION:-:+:[9915],METTL10->chr10:126436718-126480439:-,methyltransferase_like_10,FAM175B->chr10:126490354-126525239:+,family_with_sequence_similarity_175_member_B	OAW42_OVARY	0.09	0.1	0.1305	TRUE	0	0	0	1	0	FALSE	ACH-000704
OAW42_OVARY	MT-ND4--MT-ND4L	3	7	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	14	0	0.42	1	0.0301	0.0703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OAW42_OVARY	0.42	1	0.1004	FALSE	344	826	44	306	0	FALSE	ACH-000704
OAW42_OVARY	RP11-498C9.2--RPLP1	4	1	RP11-498C9.2	1710	chr17:79801750:+	RPLP1	4896	chr15:69745224:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0.01	RP11-498C9.2->chr17:79801041-79801834:+,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	OAW42_OVARY	1	1	0.0502	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	ALDOA--MT-ND4	4	0	ALDOA	9161	chr16:30078933:+	MT-ND4	15475	chrM:11228:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	OAW42_OVARY	1	1	0.0402	FALSE	0	0	0	6	0	FALSE	ACH-000704
OAW42_OVARY	JUP--MT-CO3	4	0	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OAW42_OVARY	1	1	0.0402	FALSE	0	0	0	33	0	FALSE	ACH-000704
OAW42_OVARY	MT-TA--MT-TC	3	4	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0.0402	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OAW42_OVARY	1	1	0.0703	FALSE	462	80	0	856	0	FALSE	ACH-000704
OAW42_OVARY	FSD1L--SLC44A1	3	2	FSD1L	18936	chr9:108301632:+	SLC44A1	31429	chr9:108061501:+	ONLY_REF_SPLICE	YES	4	7	0.56	0.42	0.0301	0.0201	LOCAL_REARRANGEMENT:+:[8625],FSD1L->chr9:108210077-108314714:+,fibronectin_type_III_and_SPRY_domain_containing_1_like,SLC44A1->chr9:108006903-108201452:+,solute_carrier_family_44_member_1	OAW42_OVARY	0.42	0.56	0.0502	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12327	18980	0	0	0.0301	0.0201	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OAW42_OVARY	0	0	0.0502	FALSE	183	104	9	328	0	FALSE	ACH-000704
OAW42_OVARY	NRIP1--AF127936.7	3	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	4	0.62	0.56	0.0301	0.0201	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OAW42_OVARY	0.56	0.62	0.0502	FALSE	292	1546	117	613	0	FALSE	ACH-000704
OAW42_OVARY	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	36	4	0.12	0.56	0.0301	0.0201	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OAW42_OVARY	0.12	0.56	0.0502	FALSE	125	705	46	456	0	FALSE	ACH-000704
OAW42_OVARY	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	3	0	0.79	1	0.01	0.1004	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OAW42_OVARY	0.79	1	0.1104	FALSE	407	2205	196	549	0	FALSE	ACH-000704
OAW42_OVARY	TMEM170B--RP3-510L9.1	3	2	TMEM170B	1670	chr6:11538607:+	RP3-510L9.1	18186	chr6:11258722:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0301	0.0201	TMEM170B->chr6:11537938-11583757:+,transmembrane_protein_170B,RP3-510L9.1->chr6:11173685-11259332:+	OAW42_OVARY	0.83	1	0.0502	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	RP11-498C9.2--RPLP1	3	1	RP11-498C9.2	1753	chr17:79801793:+	RPLP1	4923	chr15:69745251:+	INCL_NON_REF_SPLICE	YES	0	33	1	0.11	0.0301	0.01	RP11-498C9.2->chr17:79801041-79801834:+,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	OAW42_OVARY	0.11	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	MICALL1--TEX264	3	0	MICALL1	10308	chr22:38321924:+	TEX264	30210	chr3:51718488:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	MICALL1->MICAL_like_1,chr22:38301664-38338829:+,TEX264->chr3:51696709-51738339:+,testis_expressed_264	OAW42_OVARY	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OAW42_OVARY	1	1	0.0301	FALSE	183	104	9	328	0	FALSE	ACH-000704
OAW42_OVARY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1121	chrM:8647:+	MT-CO1	4698	chrM:5920:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0301	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OAW42_OVARY	1	1	0.0301	FALSE	182	97	9	327	0	FALSE	ACH-000704
OAW42_OVARY	ZNF619--ADAMTS9	2	4	ZNF619	1891	chr3:40519494:+	ADAMTS9	15780	chr3:64644467:-	ONLY_REF_SPLICE	YES	16	93	0.27	0.06	0.0201	0.0402	{Klijn_CCL:Ovary=1},ZNF619->chr3:40518604-40531727:+,zinc_finger_protein_619,ADAMTS9->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_9,chr3:64501333-64673676:-	OAW42_OVARY	0.06	0.27	0.0603	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	ACAP2--XXYLT1	1	7	ACAP2	1929	chr3:195162879:-	XXYLT1	60126	chr3:194790840:-	ONLY_REF_SPLICE	NO	34	129	0.19	0.06	0.01	0.0703	NEIGHBORS[3569],ACAP2->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_2,chr3:194995465-195163807:-,XXYLT1->Oncogene{Bushman},chr3:194789008-194991896:-,xyloside_xylosyltransferase_1	OAW42_OVARY	0.06	0.19	0.0803	FALSE	0	1	0	1	0	FALSE	ACH-000704
OAW42_OVARY	B4GALT1--BAG1	2	2	B4GALT1	1599	chr9:33166756:-	BAG1	16811	chr9:33262828:-	ONLY_REF_SPLICE	YES	807	57	0	0.07	0.0201	0.0201	GTEx_v2:{count=2;pct=0.02%;dist=Liver=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Cervix=3},LOCAL_REARRANGEMENT:-:[80464],B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,BAG1->BCL2_associated_athanogene_1,Oncogene{Bushman},chr9:33247818-33264761:-	OAW42_OVARY	0	0.07	0.0402	FALSE	0	5	1	5	3	FALSE	ACH-000704
OAW42_OVARY	MIR137HG--DPYD	1	6	MIR137HG	3106	chr1:98511564:-	DPYD	30412	chr1:97981497:-	ONLY_REF_SPLICE	YES	6	55	0.54	0.11	0.01	0.0602	NEIGHBORS[66951],MIR137HG->MIR137_host_gene,chr1:98453556-98515419:-,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	OAW42_OVARY	0.11	0.54	0.0702	FALSE	0	0	0	1	0	FALSE	ACH-000704
OAW42_OVARY	AGPAT3--XXbac-B33L19.4	1	5	AGPAT3	2888	chr21:45287227:+	XXbac-B33L19.4	33242	chr22:20331888:-	ONLY_REF_SPLICE	NO	40	0	0.13	1	0.01	0.0502	AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+,XXbac-B33L19.4->chr22:20330726-20331888:-	OAW42_OVARY	0.13	1	0.0602	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	LLGL2--TSEN54	2	1	LLGL2	10954	chr17:73554708:+	TSEN54	30174	chr17:73517490:+	ONLY_REF_SPLICE	YES	505	223	0.01	0.01	0.0201	0.01	LOCAL_REARRANGEMENT:+:[341],LLGL2->LLGL2,_scribble_cell_polarity_complex_component,chr17:73521161-73571289:+,TSEN54->chr17:73512141-73520820:+,tRNA_splicing_endonuclease_subunit_54	OAW42_OVARY	0.01	0.01	0.0301	FALSE	0	0	0	1	0	FALSE	ACH-000704
OAW42_OVARY	NRIP1--AF127936.7	1	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	43	4	0.12	0.6	0.01	0.0502	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OAW42_OVARY	0.12	0.6	0.0602	FALSE	164	806	69	479	0	FALSE	ACH-000704
OAW42_OVARY	PFKP--DIP2C	2	1	PFKP	14271	chr10:3151672:+	DIP2C	34645	chr10:532470:-	ONLY_REF_SPLICE	YES	700	18	0	0.14	0.0201	0.01	PFKP->chr10:3108525-3179904:+,phosphofructokinase,_platelet,DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C	OAW42_OVARY	0	0.14	0.0301	FALSE	0	0	0	1	0	FALSE	ACH-000704
OAW42_OVARY	VMP1--RPS6KB1	2	1	VMP1	1557	chr17:57785109:+	RPS6KB1	26422	chr17:57987923:+	ONLY_REF_SPLICE	YES	48	54	0.06	0.05	0.0201	0.01	NEIGHBORS[50831],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	OAW42_OVARY	0.05	0.06	0.0301	FALSE	0	1	0	2	0	FALSE	ACH-000704
OAW42_OVARY	ZDHHC18--PIGV	1	5	ZDHHC18	8188	chr1:27180316:+	PIGV	18660	chr1:27120604:+	ONLY_REF_SPLICE	YES	125	32	0.05	0.16	0.01	0.0502	LOCAL_REARRANGEMENT:+:[28312],ZDHHC18->Oncogene{Bushman},chr1:27153201-27184093:+,zinc_finger_DHHC-type_containing_18,PIGV->chr1:27113963-27124889:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_V	OAW42_OVARY	0.05	0.16	0.0602	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	ANXA4--RPL7A	2	0	ANXA4	10833	chr2:70033564:+	RPL7A	30186	chr9:136217095:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	ANXA4->annexin_A4,chr2:69871557-70053596:+,RPL7A->chr9:136215069-136218281:+,ribosomal_protein_L7a	OAW42_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	C17orf76-AS1--PTCD3	2	0	C17orf76-AS1	1593	chr17:16342728:+	PTCD3	33495	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	OAW42_OVARY	1	1	0.0201	TRUE	0	3	0	8	0	TRUE	ACH-000704
OAW42_OVARY	CDC42SE2--CTD-2410N18.5	2	0	CDC42SE2	5200	chr5:130599859:+	CTD-2410N18.5	21445	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,CTD-2410N18.5->chr5:133502861-133561762:-	OAW42_OVARY	1	1	0.0201	TRUE	0	1	0	3	1	TRUE	ACH-000704
OAW42_OVARY	CTD-2006C1.2--UBE2D2	2	0	CTD-2006C1.2	3469	chr19:12112637:+	UBE2D2	22276	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CTD-2006C1.2->chr19:12098432-12157090:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	OAW42_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	GATAD2B--RALGPS2	2	0	GATAD2B	1243	chr1:153895209:-	RALGPS2	41229	chr1:178885465:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+	OAW42_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	RRP7A--CTNNBL1	2	0	RRP7A	1089	chr22:42915720:-	CTNNBL1	16147	chr20:36361281:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	RRP7A->chr22:42905974-42915808:-,ribosomal_RNA_processing_7_homolog_A,CTNNBL1->catenin_beta_like_1,chr20:36322408-36500531:+	OAW42_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	AGPAT3--XXbac-B33L19.4	1	3	AGPAT3	1160	chr21:45285226:+	XXbac-B33L19.4	33242	chr22:20331888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.01	0.0301	AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+,XXbac-B33L19.4->chr22:20330726-20331888:-	OAW42_OVARY	1	1	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	CSNK1G2--TRAF7	1	3	CSNK1G2	1230	chr19:1941417:+	TRAF7	25057	chr16:2224252:+	ONLY_REF_SPLICE	NO	0	266	1	0.01	0.01	0.0301	CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,TRAF7->Oncogene{Bushman},TNF_receptor_associated_factor_7,chr16:2205699-2228130:+	OAW42_OVARY	0.01	1	0.0401	FALSE	0	0	0	1	0	FALSE	ACH-000704
OAW42_OVARY	CSNK1G2--TRAF7	1	2	CSNK1G2	1230	chr19:1941417:+	TRAF7	26107	chr16:2225302:+	ONLY_REF_SPLICE	YES	0	237	1	0.01	0.01	0.0201	CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,TRAF7->Oncogene{Bushman},TNF_receptor_associated_factor_7,chr16:2205699-2228130:+	OAW42_OVARY	0.01	1	0.0301	FALSE	0	0	0	1	0	FALSE	ACH-000704
OAW42_OVARY	GLYCTK--NOL12	1	2	GLYCTK	3826	chr3:52325127:+	NOL12	32571	chr22:38147779:+	ONLY_REF_SPLICE	YES	91	1	0.03	0.75	0.01	0.0201	GLYCTK->chr3:52321105-52329272:+,glycerate_kinase,NOL12->chr22:38077680-38170137:+,nucleolar_protein_12	OAW42_OVARY	0.03	0.75	0.0301	TRUE	0	0	0	1	0	FALSE	ACH-000704
OAW42_OVARY	RP11-381N20.2--RP11-93L9.1	1	2	RP11-381N20.2	2449	chr4:124418099:+	RP11-93L9.1	15914	chr4:124750250:+	ONLY_REF_SPLICE	YES	1	13	0.75	0.19	0.01	0.0201	RP11-381N20.2->chr4:124411423-124443261:+,RP11-93L9.1->chr4:124571422-124851561:+	OAW42_OVARY	0.19	0.75	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000704
OAW42_OVARY	CPSF6--DAP3	1	1	CPSF6	11046	chr12:69656342:+	DAP3	35386	chr1:155708400:+	ONLY_REF_SPLICE	YES	261	46	0.01	0.04	0.01	0.01	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	OAW42_OVARY	0.01	0.04	0.02	FALSE	0	1	0	3	0	FALSE	ACH-000704
OAW42_OVARY	CTC-786C10.1--GSE1	1	1	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	75	1	0.03	0.01	0.01	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	OAW42_OVARY	0.03	1	0.02	TRUE	2	3	0	21	0	FALSE	ACH-000704
OAW42_OVARY	STX18-AS1--MSX1	1	1	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	1	431	0.67	0	0.01	0.01	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	OAW42_OVARY	0	0.67	0.02	FALSE	37	101	7	40	0	FALSE	ACH-000704
OAW42_OVARY	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	2123	130	0	0.02	0.01	0.01	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	OAW42_OVARY	0	0.02	0.02	FALSE	6	50	7	115	0	FALSE	ACH-000704
NCIH2286_LUNG	MARK4--RP11-255H23.4	175	68	MARK4	8667	chr19:45774966:+	RP11-255H23.4	26940	chr19:24006708:-	ONLY_REF_SPLICE	YES	36	0	0.87	1	1.8476	0.7179	MARK4->Oncogene{Bushman},chr19:45582546-45808541:+,microtubule_affinity_regulating_kinase_4,RP11-255H23.4->chr19:24000401-24057503:-	NCIH2286_LUNG	0.87	1	2.5655	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	TIMM23B--LINC00843	92	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9713	0.2217	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2286_LUNG	1	1	1.193	TRUE	508	994	45	981	0	FALSE	ACH-000912
NCIH2286_LUNG	ELAVL1--FBN3	65	30	ELAVL1	4609	chr19:8045967:-	FBN3	49690	chr19:8161890:-	ONLY_REF_SPLICE	YES	322	1	0.23	0.99	0.6863	0.3167	LOCAL_REARRANGEMENT:-:[59743],ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-,FBN3->chr19:8130286-8214730:-,fibrillin_3	NCIH2286_LUNG	0.23	0.99	1.003	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	TIMM23--RP11-464F9.1	56	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5912	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2286_LUNG	1	1	0.5912	TRUE	519	3926	326	965	0	FALSE	ACH-000912
NCIH2286_LUNG	MT-TA--MT-TC	47	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4962	0.0633	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2286_LUNG	1	1	0.5595	FALSE	462	80	0	856	0	FALSE	ACH-000912
NCIH2286_LUNG	KANSL1--ARL17B	40	24	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	29	76	0.69	0.46	0.4223	0.2534	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH2286_LUNG	0.46	0.69	0.6757	TRUE	181	1564	124	196	0	FALSE	ACH-000912
NCIH2286_LUNG	GRK5--FAM45A	36	8	GRK5	1381	chr10:120967481:+	FAM45A	31990	chr10:120889027:+	ONLY_REF_SPLICE	YES	8	106	0.85	0.29	0.3801	0.0845	LOCAL_REARRANGEMENT:+:[69605],GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+,FAM45A->chr10:120863598-120897496:+,family_with_sequence_similarity_45_member_A	NCIH2286_LUNG	0.29	0.85	0.4646	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	PCNT--C21orf58	34	16	PCNT	3302	chr21:47746503:+	C21orf58	63816	chr21:47722490:-	ONLY_REF_SPLICE	YES	42	16	0.54	0.76	0.359	0.1689	LOCAL_INVERSION:+:-:[247],PCNT->chr21:47744036-47865682:+,pericentrin,C21orf58->chr21:47720095-47743789:-,chromosome_21_open_reading_frame_58	NCIH2286_LUNG	0.54	0.76	0.5279	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	PLXDC1--TAF13	38	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4012	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH2286_LUNG	1	1	0.4012	TRUE	7	10	0	216	0	FALSE	ACH-000912
NCIH2286_LUNG	ZNF654--HMGB2	36	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3801	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2286_LUNG	1	1	0.3801	TRUE	0	0	0	518	0	FALSE	ACH-000912
NCIH2286_LUNG	C21orf58--PCNT	27	17	C21orf58	9364	chr21:47731370:-	PCNT	60937	chr21:47859996:+	ONLY_REF_SPLICE	YES	18	72	0.71	0.38	0.2851	0.1795	LOCAL_INVERSION:-:+:[247],C21orf58->chr21:47720095-47743789:-,chromosome_21_open_reading_frame_58,PCNT->chr21:47744036-47865682:+,pericentrin	NCIH2286_LUNG	0.38	0.71	0.4646	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	RP11-680G10.1--GSE1	27	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	94	1	0.27	0.2851	0.0845	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2286_LUNG	0.27	1	0.3696	TRUE	458	1351	185	561	0	FALSE	ACH-000912
NCIH2286_LUNG	RP11-680G10.1--GSE1	23	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	141	1	0.18	0.2428	0.0739	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2286_LUNG	0.18	1	0.3167	TRUE	465	1949	224	605	0	FALSE	ACH-000912
NCIH2286_LUNG	MT-ND6--MT-TE	22	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2323	0.0106	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2286_LUNG	1	1	0.2429	FALSE	499	1288	110	792	0	FALSE	ACH-000912
NCIH2286_LUNG	MT-ND6--MT-TE	16	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1689	0.0106	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2286_LUNG	1	1	0.1795	FALSE	499	1288	110	792	0	FALSE	ACH-000912
NCIH2286_LUNG	MICAL2--TUBB	15	2	MICAL2	4933	chr11:12132273:+	TUBB	53732	chr6:30690314:+	ONLY_REF_SPLICE	YES	7	3443	0.71	0	0.1584	0.0211	MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2,TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I	NCIH2286_LUNG	0	0.71	0.1795	TRUE	0	0	0	1	0	FALSE	ACH-000912
NCIH2286_LUNG	MT-ND6--MT-TE	12	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.1267	0.1161	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2286_LUNG	0.92	1	0.2428	FALSE	499	1288	110	792	0	FALSE	ACH-000912
NCIH2286_LUNG	MT-TA--MT-TC	11	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1161	0.0633	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2286_LUNG	1	1	0.1794	FALSE	462	80	0	856	0	FALSE	ACH-000912
NCIH2286_LUNG	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1267	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2286_LUNG	1	1	0.1267	TRUE	0	0	0	434	0	FALSE	ACH-000912
NCIH2286_LUNG	GRK5--FAM45A	9	6	GRK5	1381	chr10:120967481:+	FAM45A	33098	chr10:120892027:+	ONLY_REF_SPLICE	YES	8	81	0.65	0.16	0.095	0.0633	LOCAL_REARRANGEMENT:+:[69605],GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+,FAM45A->chr10:120863598-120897496:+,family_with_sequence_similarity_45_member_A	NCIH2286_LUNG	0.16	0.65	0.1583	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	ELAVL1--FBN3	2	31	ELAVL1	4609	chr19:8045967:-	FBN3	49282	chr19:8162298:-	ONLY_REF_SPLICE	YES	322	0	0.09	1	0.0211	0.3273	LOCAL_REARRANGEMENT:-:[59743],ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-,FBN3->chr19:8130286-8214730:-,fibrillin_3	NCIH2286_LUNG	0.09	1	0.3484	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	C15orf57--CBX3	7	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	63	38	0.2	0.3	0.0739	0.095	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2286_LUNG	0.2	0.3	0.1689	TRUE	267	562	48	632	0	FALSE	ACH-000912
NCIH2286_LUNG	C15orf57--CBX3	7	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	59	41	0.17	0.23	0.0739	0.0528	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2286_LUNG	0.17	0.23	0.1267	TRUE	267	562	48	632	0	FALSE	ACH-000912
NCIH2286_LUNG	NIPA2--POLA1	8	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	NCIH2286_LUNG	1	1	0.0845	TRUE	46	1352	75	139	0	FALSE	ACH-000912
NCIH2286_LUNG	AP000525.9--LA16c-60G3.6	7	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	7	0	0.53	1	0.0739	0.0106	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH2286_LUNG	0.53	1	0.0845	TRUE	0	42	0	133	42	FALSE	ACH-000912
NCIH2286_LUNG	RP4-565E6.1--HYDIN	6	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0633	0.0211	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH2286_LUNG	1	1	0.0844	TRUE	456	1387	91	133	0	FALSE	ACH-000912
NCIH2286_LUNG	MT-ND6--MT-TE	3	11	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0.1161	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2286_LUNG	1	1	0.1478	FALSE	499	1288	110	792	0	FALSE	ACH-000912
NCIH2286_LUNG	MT-TA--MT-TC	4	6	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0.0633	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2286_LUNG	1	1	0.1055	FALSE	462	80	0	856	0	FALSE	ACH-000912
NCIH2286_LUNG	SLC1A5--MT-ND4L	5	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	649	0	0.01	1	0.0528	0.0106	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2286_LUNG	0.01	1	0.0634	FALSE	0	0	0	189	0	FALSE	ACH-000912
NCIH2286_LUNG	HSP90AB1--MT-RNR2	4	4	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2674	0	0	1	0.0422	0.0422	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2286_LUNG	0	1	0.0844	FALSE	13	9	0	364	0	FALSE	ACH-000912
NCIH2286_LUNG	IGFBP4--NPM1	5	0	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	NCIH2286_LUNG	1	1	0.0528	TRUE	0	0	0	38	0	FALSE	ACH-000912
NCIH2286_LUNG	MT-TA--MT-TC	3	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0.0845	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2286_LUNG	1	1	0.1162	FALSE	462	80	0	856	0	FALSE	ACH-000912
NCIH2286_LUNG	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2286_LUNG	1	1	0.0528	TRUE	0	0	0	434	0	FALSE	ACH-000912
NCIH2286_LUNG	EEF2--MT2A	3	7	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	2149	3	0	0.77	0.0317	0.0739	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	NCIH2286_LUNG	0	0.77	0.1056	TRUE	1	0	0	19	0	FALSE	ACH-000912
NCIH2286_LUNG	RP11-120D5.1--MID1	4	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	65	1	0.08	0.0422	0.0211	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2286_LUNG	0.08	1	0.0633	FALSE	16	356	14	466	0	FALSE	ACH-000912
NCIH2286_LUNG	HSP90AB1--MT-RNR2	3	4	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2652	0	0	1	0.0317	0.0422	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2286_LUNG	0	1	0.0739	FALSE	13	9	0	364	0	FALSE	ACH-000912
NCIH2286_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2286_LUNG	1	1	0.0422	FALSE	499	1288	110	792	0	FALSE	ACH-000912
NCIH2286_LUNG	PFKM--MT-ND4L	4	0	PFKM	16513	chr12:48531603:+	MT-ND4L	27661	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	PFKM->chr12:48498922-48540187:+,phosphofructokinase,_muscle,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2286_LUNG	1	1	0.0422	FALSE	0	0	0	8	0	FALSE	ACH-000912
NCIH2286_LUNG	RP11-114H23.1--RP11-114H23.2	4	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0422	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH2286_LUNG	1	1	0.0422	FALSE	81	155	12	160	0	FALSE	ACH-000912
NCIH2286_LUNG	RP11-120D5.1--MID1	3	2	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	0	65	1	0.07	0.0317	0.0211	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2286_LUNG	0.07	1	0.0528	FALSE	0	9	0	55	0	FALSE	ACH-000912
NCIH2286_LUNG	ELAVL1--FBN3	1	9	ELAVL1	4609	chr19:8045967:-	FBN3	50616	chr19:8160964:-	ONLY_REF_SPLICE	NO	322	15	0.03	0.4	0.0106	0.095	LOCAL_REARRANGEMENT:-:[59743],ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-,FBN3->chr19:8130286-8214730:-,fibrillin_3	NCIH2286_LUNG	0.03	0.4	0.1056	TRUE	0	0	0	1	0	FALSE	ACH-000912
NCIH2286_LUNG	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0317	0.0106	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2286_LUNG	0.8	1	0.0423	FALSE	515	4851	409	746	0	FALSE	ACH-000912
NCIH2286_LUNG	SLC1A5--MT-ND4L	3	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	612	0	0.01	1	0.0317	0.0106	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2286_LUNG	0.01	1	0.0423	FALSE	0	0	0	189	0	FALSE	ACH-000912
NCIH2286_LUNG	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2286_LUNG	1	1	0.0317	FALSE	462	80	0	856	0	FALSE	ACH-000912
NCIH2286_LUNG	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2286_LUNG	1	1	0.0317	TRUE	0	0	0	434	0	FALSE	ACH-000912
NCIH2286_LUNG	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2286_LUNG	1	1	0.0317	FALSE	292	1546	117	613	0	FALSE	ACH-000912
NCIH2286_LUNG	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH2286_LUNG	1	1	0.0317	TRUE	22	156	2	142	0	FALSE	ACH-000912
NCIH2286_LUNG	TPH2--TRHDE	2	1	TPH2	18133	chr12:72441437:+	TRHDE	37350	chr12:72680461:+	ONLY_REF_SPLICE	YES	0	18	1	0.14	0.0211	0.0106	NEIGHBORS_OVERLAP:+:+:[99352],TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	NCIH2286_LUNG	0.14	1	0.0317	FALSE	0	1	0	4	0	FALSE	ACH-000912
NCIH2286_LUNG	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	NCIH2286_LUNG	1	1	0.0211	TRUE	0	6	0	16	3	TRUE	ACH-000912
NCIH2286_LUNG	HIGD1A--ANXA5	2	0	HIGD1A	2503	chr3:42835649:-	ANXA5	17315	chr4:122599105:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	HIGD1A->HIG1_hypoxia_inducible_domain_family_member_1A,chr3:42798669-42846023:-,ANXA5->annexin_A5,chr4:122589110-122618268:-	NCIH2286_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	LINC01059--EEF1D	2	0	LINC01059	1432	chr11:123325537:+	EEF1D	18598	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LINC01059->chr11:123325106-123331118:+,long_intergenic_non-protein_coding_RNA_1059,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	NCIH2286_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	MORF4L2--HNRNPH3	2	0	MORF4L2	4308	chrX:102939609:-	HNRNPH3	15769	chr10:70099197:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	MORF4L2->chrX:102930424-102943086:-,mortality_factor_4_like_2,HNRNPH3->chr10:70090931-70102948:+,heterogeneous_nuclear_ribonucleoprotein_H3	NCIH2286_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	NCOR1--UBB	2	0	NCOR1	3051	chr17:16118676:-	UBB	62933	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_FI:{Muscle=[count:4=pct:1.7],Lung=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=9;pct=0.10%;dist=Muscle_-_Skeletal=4,Artery_-_Tibial=1,Stomach=1,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1},NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1,UBB->chr17:16284112-16286059:+,ubiquitin_B	NCIH2286_LUNG	1	1	0.0211	TRUE	5	1	0	2	0	FALSE	ACH-000912
NCIH2286_LUNG	PTCHD3P1--PFKP	2	0	PTCHD3P1	3116	chr10:29704341:+	PFKP	22441	chr10:3124580:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PTCHD3P1->chr10:29698331-29776674:+,patched_domain_containing_3_pseudogene_1,PFKP->chr10:3108525-3179904:+,phosphofructokinase,_platelet	NCIH2286_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	RCC1--AC159540.1	2	0	RCC1	2175	chr1:28834672:+	AC159540.1	24725	chr2:98089511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,AC159540.1->chr2:98081083-98099107:-	NCIH2286_LUNG	1	1	0.0211	TRUE	0	0	0	2	0	TRUE	ACH-000912
NCIH2286_LUNG	SEMA3E--MON2	2	0	SEMA3E	1583	chr7:83277744:-	MON2	57028	chr12:62954271:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SEMA3E->chr7:82993222-83278326:-,semaphorin_3E,MON2->MON2_homolog,_regulator_of_endosome-to-Golgi_trafficking,chr12:62860597-62991363:+	NCIH2286_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000912
NCIH2286_LUNG	POLE4--RP11-355F16.1	1	2	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	452	0	0.01	1	0.0106	0.0211	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	NCIH2286_LUNG	0.01	1	0.0317	FALSE	5	7	0	37	0	FALSE	ACH-000912
NCIH2286_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	4	65	0.43	0.04	0.0106	0.0211	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2286_LUNG	0.04	0.43	0.0317	FALSE	0	48	1	163	0	FALSE	ACH-000912
NCIH2286_LUNG	GNA13--MKI67	1	1	GNA13	1529	chr17:63052429:-	MKI67	15740	chr10:129917583:-	ONLY_REF_SPLICE	YES	151	247	0.01	0.01	0.0106	0.0106	GNA13->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_13,chr17:63006833-63052957:-,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	NCIH2286_LUNG	0.01	0.01	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000912
NCIH2286_LUNG	HN1--UBB	1	1	HN1	2390	chr17:73150437:-	UBB	14474	chr17:16285216:+	ONLY_REF_SPLICE	YES	1427	127	0	0.02	0.0106	0.0106	HN1->chr17:73131343-73164376:-,hematological_and_neurological_expressed_1,UBB->chr17:16284112-16286059:+,ubiquitin_B	NCIH2286_LUNG	0	0.02	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000912
NCIH2286_LUNG	INTS6--CTCF	1	1	INTS6	20380	chr13:51952375:-	CTCF	32788	chr16:67605051:+	ONLY_REF_SPLICE	YES	106	2	0.02	0.5	0.0106	0.0106	INTS6->Oncogene{Bushman},chr13:51928213-52028400:-,integrator_complex_subunit_6,CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+	NCIH2286_LUNG	0.02	0.5	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000912
NCIH2286_LUNG	ITCH--EIF2S2	1	1	ITCH	2192	chr20:32957276:+	EIF2S2	37761	chr20:32686439:-	ONLY_REF_SPLICE	NO	85	701	0.02	0	0.0106	0.0106	ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,EIF2S2->chr20:32676104-32700138:-,eukaryotic_translation_initiation_factor_2_subunit_beta	NCIH2286_LUNG	0	0.02	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000912
NCIH2286_LUNG	KIAA1958--SNX30	1	1	KIAA1958	3467	chr9:115337531:+	SNX30	22440	chr9:115567056:+	ONLY_REF_SPLICE	NO	28	4	0.07	0.33	0.0106	0.0106	{Klijn_CCL:Lung=1,Colo-Rectal=1},NEIGHBORS[81441],KIAA1958->KIAA1958,chr9:115249127-115431677:+,SNX30->chr9:115513118-115643951:+,sorting_nexin_family_member_30	NCIH2286_LUNG	0.07	0.33	0.0212	FALSE	5	9	0	7	0	FALSE	ACH-000912
NCIH2286_LUNG	MARCH4--XRCC5	1	1	MARCH4	3283	chr2:217234468:-	XRCC5	30052	chr2:217024791:+	ONLY_REF_SPLICE	NO	265	737	0.01	0	0.0106	0.0106	LOCAL_INVERSION:-:+:[51562],MARCH4->chr2:217122588-217236750:-,membrane_associated_ring-CH-type_finger_4,XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+	NCIH2286_LUNG	0	0.01	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000912
NCIH2286_LUNG	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0106	0.0106	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2286_LUNG	0.67	1	0.0212	FALSE	407	2205	196	549	0	FALSE	ACH-000912
NCIH2286_LUNG	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	2	0	0.5	1	0.0106	0.0106	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2286_LUNG	0.5	1	0.0212	FALSE	467	2173	244	435	0	FALSE	ACH-000912
NCIH2286_LUNG	SAE1--ARHGAP35	1	1	SAE1	11514	chr19:47673180:+	ARHGAP35	26185	chr19:47491246:+	ONLY_REF_SPLICE	NO	1027	128	0	0.02	0.0106	0.0106	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+	NCIH2286_LUNG	0	0.02	0.0212	FALSE	0	1	0	1	1	FALSE	ACH-000912
HS606T_FIBROBLAST	TIMM23B--LINC00843	94	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0552	0.247	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS606T_FIBROBLAST	1	1	1.3022	TRUE	508	994	45	981	0	FALSE	ACH-000540
HS606T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	77	54	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	0	24	1	0.85	0.8643	0.6062	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS606T_FIBROBLAST	0.85	1	1.4705	FALSE	65	26	15	9	0	FALSE	ACH-000540
HS606T_FIBROBLAST	CD63--TGFBI	86	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9654	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	HS606T_FIBROBLAST	1	1	0.9654	TRUE	0	0	0	14	0	TRUE	ACH-000540
HS606T_FIBROBLAST	MT-TA--MT-TN	53	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5949	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS606T_FIBROBLAST	1	1	0.5949	FALSE	369	2501	205	193	0	FALSE	ACH-000540
HS606T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	38	46	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	0	33	1	0.72	0.4266	0.5164	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS606T_FIBROBLAST	0.72	1	0.943	FALSE	65	26	15	9	0	FALSE	ACH-000540
HS606T_FIBROBLAST	TIMM23--RP11-464F9.1	47	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	175	4	0.22	0.92	0.5276	0.0225	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS606T_FIBROBLAST	0.22	0.92	0.5501	TRUE	519	3926	326	965	0	FALSE	ACH-000540
HS606T_FIBROBLAST	PLXDC1--TAF13	29	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3255	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS606T_FIBROBLAST	1	1	0.3255	TRUE	7	10	0	216	0	FALSE	ACH-000540
HS606T_FIBROBLAST	RP11-680G10.1--GSE1	27	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	7	1	0.83	0.3031	0.0786	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS606T_FIBROBLAST	0.83	1	0.3817	TRUE	465	1949	224	605	0	FALSE	ACH-000540
HS606T_FIBROBLAST	RP11-680G10.1--GSE1	21	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.2357	0.0898	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS606T_FIBROBLAST	0.97	1	0.3255	TRUE	458	1351	185	561	0	FALSE	ACH-000540
HS606T_FIBROBLAST	MT-ND6--MT-TE	21	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2357	0.0112	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS606T_FIBROBLAST	1	1	0.2469	FALSE	499	1288	110	792	0	FALSE	ACH-000540
HS606T_FIBROBLAST	MT-TA--MT-TN	9	31	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.101	0.348	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS606T_FIBROBLAST	1	1	0.449	FALSE	369	2501	205	193	0	FALSE	ACH-000540
HS606T_FIBROBLAST	MT-TA--MT-TN	6	41	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0.4602	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS606T_FIBROBLAST	1	1	0.5276	FALSE	369	2501	205	193	0	FALSE	ACH-000540
HS606T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	1	57	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	14416	chr11:121987031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0112	0.6398	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS606T_FIBROBLAST	1	1	0.651	FALSE	8	1	0	5	0	FALSE	ACH-000540
HS606T_FIBROBLAST	MT-TA--MT-TN	3	38	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0.4266	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS606T_FIBROBLAST	1	1	0.4603	FALSE	369	2501	205	193	0	FALSE	ACH-000540
HS606T_FIBROBLAST	MT-TA--MT-TN	9	13	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.101	0.1459	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS606T_FIBROBLAST	1	1	0.2469	FALSE	369	2501	205	193	0	FALSE	ACH-000540
HS606T_FIBROBLAST	RP1-34H18.1--NAV3	10	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	2	1	0.85	0.1123	0.0112	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HS606T_FIBROBLAST	0.85	1	0.1235	TRUE	254	575	65	124	0	FALSE	ACH-000540
HS606T_FIBROBLAST	RP4-565E6.1--HYDIN	9	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.101	0.0112	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS606T_FIBROBLAST	1	1	0.1122	TRUE	456	1387	91	133	0	FALSE	ACH-000540
HS606T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	8	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.0898	0.0449	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS606T_FIBROBLAST	0.86	1	0.1347	FALSE	407	2205	196	549	0	FALSE	ACH-000540
HS606T_FIBROBLAST	SAR1A--MICB	9	0	SAR1A	12354	chr10:71910295:-	MICB	23202	chr6:31475255:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.101	0	GTEx_FI:{Blood_Vessel=[count:3=pct:0.8],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Thyroid=[count:2=pct:1.1],Vagina=[count:1=pct:1.8],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Skin=[count:1=pct:0.3],_not_provided_=[count:1=pct:100.0],Colon=[count:1=pct:0.5]},SAR1A->chr10:71907045-71930279:-,secretion_associated_Ras_related_GTPase_1A,MICB->MHC_class_I_polypeptide-related_sequence_B,chr6:31462658-31478901:+	HS606T_FIBROBLAST	1	1	0.101	TRUE	2	1	0	2	0	FALSE	ACH-000540
HS606T_FIBROBLAST	MT-ND6--MT-TE	6	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0674	0.101	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS606T_FIBROBLAST	0.94	1	0.1684	FALSE	499	1288	110	792	0	FALSE	ACH-000540
HS606T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	3	21	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	20284	chr11:121962448:-	ONLY_REF_SPLICE	YES	0	24	1	0.5	0.0337	0.2357	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS606T_FIBROBLAST	0.5	1	0.2694	FALSE	40	10	5	8	0	FALSE	ACH-000540
HS606T_FIBROBLAST	FTH1--ACTB	8	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0898	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS606T_FIBROBLAST	1	1	0.0898	TRUE	1	0	0	97	0	FALSE	ACH-000540
HS606T_FIBROBLAST	MT-CO3--MT-ATP6	3	20	MT-CO3	1522	chrM:9728:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	1	13	0.96	0.64	0.0337	0.2245	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS606T_FIBROBLAST	0.64	0.96	0.2582	FALSE	189	492	56	216	0	FALSE	ACH-000540
HS606T_FIBROBLAST	C15orf57--CBX3	7	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	30	13	0.23	0.41	0.0786	0.0225	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS606T_FIBROBLAST	0.23	0.41	0.1011	TRUE	267	562	48	632	0	FALSE	ACH-000540
HS606T_FIBROBLAST	FTH1--ACTB	7	0	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0786	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS606T_FIBROBLAST	1	1	0.0786	TRUE	1	0	0	97	0	FALSE	ACH-000540
HS606T_FIBROBLAST	MT-ND6--MT-TE	6	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0.0112	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS606T_FIBROBLAST	1	1	0.0786	FALSE	499	1288	110	792	0	FALSE	ACH-000540
HS606T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	2	17	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	20305	chr11:121962427:-	ONLY_REF_SPLICE	YES	0	33	1	0.37	0.0225	0.1908	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS606T_FIBROBLAST	0.37	1	0.2133	FALSE	40	10	5	8	0	FALSE	ACH-000540
HS606T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	5	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0561	0.0449	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS606T_FIBROBLAST	0.82	1	0.101	FALSE	515	4851	409	746	0	FALSE	ACH-000540
HS606T_FIBROBLAST	CTD-2337A12.1--CAST	5	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	39	1	0.13	0.0561	0.0112	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS606T_FIBROBLAST	0.13	1	0.0673	TRUE	347	1186	183	220	0	FALSE	ACH-000540
HS606T_FIBROBLAST	EIF1--RPS28	5	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0561	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HS606T_FIBROBLAST	1	1	0.0561	TRUE	0	0	0	81	0	FALSE	ACH-000540
HS606T_FIBROBLAST	MT-TA--MT-TN	5	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0561	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS606T_FIBROBLAST	1	1	0.0561	FALSE	369	2501	205	193	0	FALSE	ACH-000540
HS606T_FIBROBLAST	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0561	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS606T_FIBROBLAST	1	1	0.0561	FALSE	292	1546	117	613	0	FALSE	ACH-000540
HS606T_FIBROBLAST	CTB-113P19.1--FTL	4	3	CTB-113P19.1	4742	chr5:151066491:+	FTL	9972	chr19:49468589:+	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0449	0.0337	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	HS606T_FIBROBLAST	0.88	1	0.0786	TRUE	0	2	0	13	2	TRUE	ACH-000540
HS606T_FIBROBLAST	IGFBP5--THBS1	4	0	IGFBP5	5338	chr2:217541458:-	THBS1	22374	chr15:39882732:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0449	0	GTEx&tcga_normals:1/3694=0.03%,IGFBP5->Oncogene{Bushman},chr2:217536828-217560248:-,insulin_like_growth_factor_binding_protein_5,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	HS606T_FIBROBLAST	1	1	0.0449	TRUE	0	0	0	1	0	TRUE	ACH-000540
HS606T_FIBROBLAST	MT-CO2--THBS1	3	4	MT-CO2	1396	chrM:7981:+	THBS1	19080	chr15:39887722:+	INCL_NON_REF_SPLICE	YES	9820	7295	0	0	0.0337	0.0449	MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	HS606T_FIBROBLAST	0	0	0.0786	FALSE	0	0	0	1	0	FALSE	ACH-000540
HS606T_FIBROBLAST	MT-TA--MT-TN	4	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0449	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS606T_FIBROBLAST	1	1	0.0449	FALSE	369	2501	205	193	0	FALSE	ACH-000540
HS606T_FIBROBLAST	MT-TA--MT-TN	4	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0449	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HS606T_FIBROBLAST	1	1	0.0449	FALSE	369	2501	205	193	0	FALSE	ACH-000540
HS606T_FIBROBLAST	NRIP1--AF127936.7	4	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0449	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS606T_FIBROBLAST	1	1	0.0449	FALSE	125	705	46	456	0	FALSE	ACH-000540
HS606T_FIBROBLAST	C15orf57--CBX3	3	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	28	13	0.15	0.28	0.0337	0.0225	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS606T_FIBROBLAST	0.15	0.28	0.0562	TRUE	267	562	48	632	0	FALSE	ACH-000540
HS606T_FIBROBLAST	CTB-113P19.1--FTL	3	1	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0337	0.0112	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	HS606T_FIBROBLAST	0.67	1	0.0449	TRUE	0	2	0	13	2	TRUE	ACH-000540
HS606T_FIBROBLAST	MT-CO2--THBS1	3	1	MT-CO2	1278	chrM:7863:+	THBS1	19340	chr15:39887982:+	INCL_NON_REF_SPLICE	YES	10709	7213	0	0	0.0337	0.0112	MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	HS606T_FIBROBLAST	0	0	0.0449	FALSE	0	0	0	1	0	FALSE	ACH-000540
HS606T_FIBROBLAST	CTGF--MT2A	3	0	CTGF	1166	chr6:132272348:-	MT2A	7582	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS606T_FIBROBLAST	1	1	0.0337	TRUE	0	0	0	3	0	TRUE	ACH-000540
HS606T_FIBROBLAST	FTH1--ACTB	3	0	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS606T_FIBROBLAST	1	1	0.0337	TRUE	1	0	0	97	0	FALSE	ACH-000540
HS606T_FIBROBLAST	JSRP1--RPS28	3	0	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HS606T_FIBROBLAST	1	1	0.0337	TRUE	0	1	0	84	1	FALSE	ACH-000540
HS606T_FIBROBLAST	MT-CO3--MT-ATP6	3	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS606T_FIBROBLAST	1	1	0.0337	FALSE	189	492	56	216	0	FALSE	ACH-000540
HS606T_FIBROBLAST	MT-CO3--MT-ATP6	3	0	MT-CO3	1153	chrM:9359:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HS606T_FIBROBLAST	1	1	0.0337	FALSE	189	492	56	216	0	FALSE	ACH-000540
HS606T_FIBROBLAST	NRIP1--AF127936.7	3	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS606T_FIBROBLAST	1	1	0.0337	FALSE	164	806	69	479	0	FALSE	ACH-000540
HS606T_FIBROBLAST	SLC1A5--MT-ND4L	3	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS606T_FIBROBLAST	1	1	0.0337	FALSE	0	0	0	189	0	FALSE	ACH-000540
HS606T_FIBROBLAST	RP11-353N4.6--SEC22B	2	2	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	11	681	0.27	0.01	0.0225	0.0225	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HS606T_FIBROBLAST	0.01	0.27	0.045	FALSE	49	42	7	43	0	FALSE	ACH-000540
HS606T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	2	2	RP11-820L6.1	11286	chr11:122026259:-	RP11-166D19.1	26134	chr11:121937142:-	ONLY_REF_SPLICE	YES	0	4	1	0.5	0.0225	0.0225	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS606T_FIBROBLAST	0.5	1	0.045	FALSE	17	5	3	5	0	FALSE	ACH-000540
HS606T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0112	0.0561	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS606T_FIBROBLAST	1	1	0.0673	FALSE	467	2173	244	435	0	FALSE	ACH-000540
HS606T_FIBROBLAST	HMGA2--MSRB3	2	0	HMGA2	5315	chr12:66232349:+	MSRB3	29738	chr12:65702309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3	HS606T_FIBROBLAST	1	1	0.0225	TRUE	0	0	0	2	0	TRUE	ACH-000540
HS606T_FIBROBLAST	MAGI2-IT1--MAGI2	2	0	MAGI2-IT1	1094	chr7:78629521:-	MAGI2	11705	chr7:78256555:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	NEIGHBORS_OVERLAP:-:-:[99023],MAGI2-IT1->MAGI2_intronic_transcript_1,chr7:78530591-78629614:-,MAGI2->ArcherDX_panel,FoundationOne_panel,chr7:77646393-79082890:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_2	HS606T_FIBROBLAST	1	1	0.0225	FALSE	4	7	0	2	0	FALSE	ACH-000540
HS606T_FIBROBLAST	RP11-820L6.1--RP11-166D19.1	1	2	RP11-820L6.1	10204	chr11:122051044:-	RP11-166D19.1	26134	chr11:121937142:-	ONLY_REF_SPLICE	YES	0	4	1	0.43	0.0112	0.0225	NEIGHBORS[39099],RP11-820L6.1->chr11:122026130-122293579:-,RP11-166D19.1->chr11:121899063-121987031:-	HS606T_FIBROBLAST	0.43	1	0.0337	FALSE	10	1	1	4	0	FALSE	ACH-000540
HS606T_FIBROBLAST	CTDSP1--DNM3OS	1	1	CTDSP1	5150	chr2:219267128:+	DNM3OS	12044	chr1:172113577:-	ONLY_REF_SPLICE	YES	96	17	0.02	0.11	0.0112	0.0112	GTEx_FI:{Blood_Vessel=[count:34=pct:9.2],Ovary=[count:11=pct:20.8],Colon=[count:9=pct:4.7],Esophagus=[count:5=pct:1.2],Adipose_Tissue=[count:4=pct:1.3],Breast=[count:4=pct:3.6],Thyroid=[count:4=pct:2.3],Spleen=[count:3=pct:2.7],Lung=[count:3=pct:1.8],Vagina=[count:2=pct:3.6],Uterus=[count:2=pct:4.7],Skin=[count:2=pct:0.6],Prostate=[count:2=pct:3.3],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Testis=[count:1=pct:1.0]},CTDSP1->CTD_small_phosphatase_1,chr2:219262979-219270664:+,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	HS606T_FIBROBLAST	0.02	0.11	0.0224	TRUE	71	70	15	9	0	FALSE	ACH-000540
HS606T_FIBROBLAST	NRP1--ITGB1	1	1	NRP1	4012	chr10:33619636:-	ITGB1	47238	chr10:33224486:-	ONLY_REF_SPLICE	YES	199	509	0.01	0	0.0112	0.0112	HGNC_GENEFAM,{Klijn_CCL:Head-Neck=1},NRP1->chr10:33466420-33625190:-,neuropilin_1,ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1	HS606T_FIBROBLAST	0	0.01	0.0224	FALSE	0	1	0	1	0	FALSE	ACH-000540
HS606T_FIBROBLAST	PRR16--CTD-2334D19.1	1	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	32	0	0.06	1	0.0112	0.0112	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS606T_FIBROBLAST	0.06	1	0.0224	FALSE	56	216	12	147	0	FALSE	ACH-000540
HS606T_FIBROBLAST	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	30	1	0.06	0.0112	0.0112	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS606T_FIBROBLAST	0.06	1	0.0224	TRUE	64	13	3	59	0	FALSE	ACH-000540
HS606T_FIBROBLAST	THBS1--CDH6	1	1	THBS1	12677	chr15:39885003:+	CDH6	39572	chr5:31322925:+	ONLY_REF_SPLICE	YES	9789	280	0	0.01	0.0112	0.0112	THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,CDH6->cadherin_6,chr5:31193857-31329253:+	HS606T_FIBROBLAST	0	0.01	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000540
HS606T_FIBROBLAST	TPM2--CFL1	1	1	TPM2	4592	chr9:35685061:-	CFL1	16402	chr11:65622919:-	ONLY_REF_SPLICE	YES	3095	3728	0	0	0.0112	0.0112	GTEx&tcga_normals:1/3694=0.03%,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),CFL1->chr11:65590493-65629497:-,cofilin_1	HS606T_FIBROBLAST	0	0	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000540
SLR26_KIDNEY	TIMM23B--LINC00843	102	38	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.98	1.0637	0.3963	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SLR26_KIDNEY	0.98	1	1.46	TRUE	508	994	45	981	0	FALSE	ACH-000600
SLR26_KIDNEY	TIMM23--RP11-464F9.1	62	9	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	592	1	0.11	0.99	0.6466	0.0939	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SLR26_KIDNEY	0.11	0.99	0.7405	TRUE	519	3926	326	965	0	FALSE	ACH-000600
SLR26_KIDNEY	MT-TA--MT-TC	62	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6466	0.073	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR26_KIDNEY	1	1	0.7196	FALSE	462	80	0	856	0	FALSE	ACH-000600
SLR26_KIDNEY	OAZ1--DOT1L	36	6	OAZ1	3469	chr19:2271953:+	DOT1L	41050	chr19:2232302:+	INCL_NON_REF_SPLICE	YES	3905	13	0.01	0.76	0.3754	0.0626	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[36908],OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+	SLR26_KIDNEY	0.01	0.76	0.438	TRUE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	OAZ1--DOT1L	18	42	OAZ1	4081	chr19:2272565:+	DOT1L	39237	chr19:2230489:+	INCL_NON_REF_SPLICE	YES	4288	37	0.01	0.62	0.1877	0.438	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[36908],OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+	SLR26_KIDNEY	0.01	0.62	0.6257	TRUE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	MT-ND5--MT-ATP8	24	13	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4754	13	0.01	0.74	0.2503	0.1356	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR26_KIDNEY	0.01	0.74	0.3859	FALSE	43	37	8	105	0	FALSE	ACH-000600
SLR26_KIDNEY	OR51S1--TP53I11	20	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2086	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SLR26_KIDNEY	1	1	0.2086	TRUE	402	216	10	229	0	FALSE	ACH-000600
SLR26_KIDNEY	MT-ND5--MT-ATP8	16	13	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7911	79	0	0.27	0.1669	0.1356	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR26_KIDNEY	0	0.27	0.3025	FALSE	43	37	8	105	0	FALSE	ACH-000600
SLR26_KIDNEY	OAZ1--DOT1L	10	32	OAZ1	3469	chr19:2271953:+	DOT1L	40543	chr19:2231795:+	INCL_NON_REF_SPLICE	YES	3905	59	0.01	0.42	0.1043	0.3337	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[36908],OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+	SLR26_KIDNEY	0.01	0.42	0.438	TRUE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	ASPH--PDZK1P2	13	13	ASPH	1328	chr8:62626828:-	PDZK1P2	48859	chr1:147481824:-	ONLY_REF_SPLICE	YES	921	0	0.03	1	0.1356	0.1356	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,PDZK1P2->chr1:147466533-147481824:-	SLR26_KIDNEY	0.03	1	0.2712	TRUE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	NRIP1--AF127936.7	14	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.146	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR26_KIDNEY	1	1	0.146	FALSE	292	1546	117	613	0	FALSE	ACH-000600
SLR26_KIDNEY	MT-ND5--MT-ATP8	7	27	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0.2816	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR26_KIDNEY	1	1	0.3546	FALSE	43	37	8	105	0	FALSE	ACH-000600
SLR26_KIDNEY	NRIP1--AF127936.7	12	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	48	0	0.28	1	0.1251	0.073	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR26_KIDNEY	0.28	1	0.1981	FALSE	164	806	69	479	0	FALSE	ACH-000600
SLR26_KIDNEY	C15orf57--CBX3	9	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	49	62	0.27	0.23	0.0939	0.0939	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SLR26_KIDNEY	0.23	0.27	0.1878	TRUE	267	562	48	632	0	FALSE	ACH-000600
SLR26_KIDNEY	MT-TA--MT-TC	9	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0939	0.073	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR26_KIDNEY	1	1	0.1669	FALSE	462	80	0	856	0	FALSE	ACH-000600
SLR26_KIDNEY	POLR2J3--IFNGR2	8	11	POLR2J3	5847	chr7:102207444:-	IFNGR2	28944	chr21:34851105:+	ONLY_REF_SPLICE	YES	396	0	0.05	1	0.0834	0.1147	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,IFNGR2->Oncogene{Bushman},chr21:34775202-34851655:+,interferon_gamma_receptor_2_(interferon_gamma_transducer_1)	SLR26_KIDNEY	0.05	1	0.1981	TRUE	0	0	0	1	0	TRUE	ACH-000600
SLR26_KIDNEY	AP000525.9--LA16c-60G3.6	9	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0939	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SLR26_KIDNEY	1	1	0.0939	TRUE	0	42	0	133	42	FALSE	ACH-000600
SLR26_KIDNEY	MT-ND5--MT-ND6	8	3	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	5	4206	0.69	0	0.0834	0.0313	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SLR26_KIDNEY	0	0.69	0.1147	FALSE	26	124	4	93	0	FALSE	ACH-000600
SLR26_KIDNEY	ETV6--FOXJ2	6	9	ETV6	3594	chr12:11905513:+	FOXJ2	23895	chr12:8192415:+	ONLY_REF_SPLICE	YES	19	28	0.44	0.35	0.0626	0.0939	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,FOXJ2->chr12:8185299-8208099:+,forkhead_box_J2	SLR26_KIDNEY	0.35	0.44	0.1565	TRUE	0	0	0	1	0	TRUE	ACH-000600
SLR26_KIDNEY	MT-ND5--MT-ATP8	5	10	MT-ND5	1969	chrM:13305:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	6767	541	0	0.03	0.0521	0.1043	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR26_KIDNEY	0	0.03	0.1564	FALSE	43	37	8	105	0	FALSE	ACH-000600
SLR26_KIDNEY	MEIS2--MTRR	7	1	MEIS2	9838	chr15:37375972:-	MTRR	31268	chr5:7862064:+	ONLY_REF_SPLICE	YES	10	3	0.44	0.73	0.073	0.0104	MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,MTRR->5-methyltetrahydrofolate-homocysteine_methyltransferase_reductase,chr5:7851299-7906138:+	SLR26_KIDNEY	0.44	0.73	0.0834	TRUE	0	0	0	1	0	TRUE	ACH-000600
SLR26_KIDNEY	RP11-661P17.1--SLCO3A1	7	1	RP11-661P17.1	3525	chr15:92016546:+	SLCO3A1	15689	chr15:92459223:+	ONLY_REF_SPLICE	YES	1	41	0.89	0.16	0.073	0.0104	GTEx_FI:{Pancreas=[count:3=pct:1.7]},RP11-661P17.1->chr15:91951938-92148441:+,SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1	SLR26_KIDNEY	0.16	0.89	0.0834	TRUE	1	11	1	4	10	TRUE	ACH-000600
SLR26_KIDNEY	NRIP1--AF127936.7	6	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	32	0	0.22	1	0.0626	0.0313	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR26_KIDNEY	0.22	1	0.0939	FALSE	125	705	46	456	0	FALSE	ACH-000600
SLR26_KIDNEY	RP11-96H19.1--RP11-446N19.1	5	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0521	0.073	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SLR26_KIDNEY	1	1	0.1251	FALSE	515	4851	409	746	0	FALSE	ACH-000600
SLR26_KIDNEY	OAZ1--SF3A2	5	6	OAZ1	1259	chr19:2269743:+	SF3A2	10392	chr19:2243381:+	ONLY_REF_SPLICE	YES	4317	10	0	0.52	0.0521	0.0626	LOCAL_REARRANGEMENT:+:[20807],OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,SF3A2->chr19:2236520-2248678:+,splicing_factor_3a_subunit_2	SLR26_KIDNEY	0	0.52	0.1147	TRUE	0	0	0	2	0	FALSE	ACH-000600
SLR26_KIDNEY	MT-ND5--MT-ATP8	6	1	MT-ND5	1076	chrM:12412:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	427	0	0.02	1	0.0626	0.0104	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR26_KIDNEY	0.02	1	0.073	FALSE	34	25	3	77	0	FALSE	ACH-000600
SLR26_KIDNEY	RP11-123O10.4--GRIP1	6	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0626	0.0104	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SLR26_KIDNEY	1	1	0.073	FALSE	416	2512	207	587	0	FALSE	ACH-000600
SLR26_KIDNEY	MT-ND5--MT-ND6	4	8	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0417	0.0834	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SLR26_KIDNEY	1	1	0.1251	FALSE	26	124	4	93	0	FALSE	ACH-000600
SLR26_KIDNEY	MT-TA--MT-TC	4	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0417	0.0834	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR26_KIDNEY	1	1	0.1251	FALSE	462	80	0	856	0	FALSE	ACH-000600
SLR26_KIDNEY	ANP32B--APP	5	0	ANP32B	8188	chr9:100773659:+	APP	24399	chr21:27394282:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	SLR26_KIDNEY	1	1	0.0521	TRUE	0	0	0	7	0	TRUE	ACH-000600
SLR26_KIDNEY	TAGLN2--MT-ND5	5	0	TAGLN2	6046	chr1:159888579:-	MT-ND5	10456	chrM:13064:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	TAGLN2->chr1:159887897-159895522:-,transgelin_2,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SLR26_KIDNEY	1	1	0.0521	FALSE	0	0	0	9	0	FALSE	ACH-000600
SLR26_KIDNEY	TRIM9--ZSCAN16	4	1	TRIM9	2944	chr14:51560836:-	ZSCAN16	26954	chr6:28094561:+	ONLY_REF_SPLICE	YES	41	13	0.11	0.28	0.0417	0.0104	TRIM9->chr14:51441980-51562779:-,tripartite_motif_containing_9,ZSCAN16->chr6:28092338-28097860:+,zinc_finger_and_SCAN_domain_containing_16	SLR26_KIDNEY	0.11	0.28	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000600
SLR26_KIDNEY	RP11-96H19.1--RP11-446N19.1	2	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0.0834	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SLR26_KIDNEY	1	1	0.1043	FALSE	407	2205	196	549	0	FALSE	ACH-000600
SLR26_KIDNEY	HCG4P5--SPP1	3	3	HCG4P5	1476	chr6:29910369:-	SPP1	5041	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	16	0	0.27	1	0.0313	0.0313	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	SLR26_KIDNEY	0.27	1	0.0626	TRUE	0	1	0	4	1	TRUE	ACH-000600
SLR26_KIDNEY	HSP90AB1--SLC29A1	3	3	HSP90AB1	6181	chr6:44220004:+	SLC29A1	19545	chr6:44199735:+	ONLY_REF_SPLICE	YES	4319	697	0	0.01	0.0313	0.0313	LOCAL_REARRANGEMENT:+:[12936],HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,SLC29A1->Oncogene{Bushman},chr6:44187242-44201888:+,solute_carrier_family_29_member_1_(Augustine_blood_group)	SLR26_KIDNEY	0	0.01	0.0626	FALSE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	FLNA--MT-CO2	3	2	FLNA	16638	chrX:153582028:-	MT-CO2	24780	chrM:7591:+	INCL_NON_REF_SPLICE	YES	2457	0	0	1	0.0313	0.0209	FLNA->chrX:153576892-153603006:-,filamin_A,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SLR26_KIDNEY	0	1	0.0522	FALSE	0	0	0	5	0	FALSE	ACH-000600
SLR26_KIDNEY	NRIP1--AF127936.7	1	9	NRIP1	4648	chr21:16374501:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	71	0	0.12	1	0.0104	0.0939	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR26_KIDNEY	0.12	1	0.1043	FALSE	0	1	0	3	0	FALSE	ACH-000600
SLR26_KIDNEY	P4HB--MT-ATP6	3	1	P4HB	9680	chr17:79801744:-	MT-ATP6	13790	chrM:8927:+	INCL_NON_REF_SPLICE	YES	3311	13083	0	0	0.0313	0.0104	P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SLR26_KIDNEY	0	0	0.0417	FALSE	0	2	0	2	0	FALSE	ACH-000600
SLR26_KIDNEY	HIPK2--TBXAS1	3	0	HIPK2	1174	chr7:139477404:-	TBXAS1	57410	chr7:139706891:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_v2:{count=17;pct=0.20%;dist=Whole_Blood=9,Lung=4,Spleen=2,Artery_-_Coronary=1,Adipose_-_Visceral_(Omentum)=1},NEIGHBORS_OVERLAP:-:+:[727],HIPK2->Oncogene{Bushman},chr7:139246316-139477577:-,homeodomain_interacting_protein_kinase_2,TBXAS1->chr7:139476850-139720125:+,thromboxane_A_synthase_1	SLR26_KIDNEY	1	1	0.0313	FALSE	1	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR26_KIDNEY	1	1	0.0313	FALSE	462	80	0	856	0	FALSE	ACH-000600
SLR26_KIDNEY	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SLR26_KIDNEY	1	1	0.0313	TRUE	0	0	0	434	0	FALSE	ACH-000600
SLR26_KIDNEY	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	SLR26_KIDNEY	1	1	0.0313	TRUE	22	156	2	142	0	FALSE	ACH-000600
SLR26_KIDNEY	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0104	0.0834	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SLR26_KIDNEY	1	1	0.0938	FALSE	467	2173	244	435	0	FALSE	ACH-000600
SLR26_KIDNEY	ASPH--PDZK1P2	1	6	ASPH	1328	chr8:62626828:-	PDZK1P2	50109	chr1:147477741:-	ONLY_REF_SPLICE	YES	921	175	0.01	0.04	0.0104	0.0626	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,PDZK1P2->chr1:147466533-147481824:-	SLR26_KIDNEY	0.01	0.04	0.073	FALSE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	TNFAIP8--HSD17B4	2	2	TNFAIP8	1216	chr5:118604602:+	HSD17B4	19973	chr5:118792010:+	ONLY_REF_SPLICE	YES	194	339	0.02	0.01	0.0209	0.0209	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	SLR26_KIDNEY	0.01	0.02	0.0418	FALSE	0	0	0	4	0	FALSE	ACH-000600
SLR26_KIDNEY	ASPH--PDZK1P2	2	1	ASPH	1328	chr8:62626828:-	PDZK1P2	51246	chr1:147476214:-	ONLY_REF_SPLICE	YES	921	165	0	0.02	0.0209	0.0104	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,PDZK1P2->chr1:147466533-147481824:-	SLR26_KIDNEY	0	0.02	0.0313	FALSE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	ETV6--FOXJ2	1	5	ETV6	1307	chr12:11803094:+	FOXJ2	23895	chr12:8192415:+	ONLY_REF_SPLICE	YES	15	28	0.29	0.18	0.0104	0.0521	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,FOXJ2->chr12:8185299-8208099:+,forkhead_box_J2	SLR26_KIDNEY	0.18	0.29	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000600
SLR26_KIDNEY	KIAA0101--CSNK1G1	2	1	KIAA0101	5437	chr15:64668942:-	CSNK1G1	26211	chr15:64464184:-	ONLY_REF_SPLICE	YES	766	42	0	0.07	0.0209	0.0104	NEIGHBORS[8751],KIAA0101->KIAA0101,chr15:64657193-64679886:-,CSNK1G1->casein_kinase_1_gamma_1,chr15:64457716-64648442:-	SLR26_KIDNEY	0	0.07	0.0313	FALSE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	TNFRSF1A--SCNN1A	2	1	TNFRSF1A	1339	chr12:6450942:-	SCNN1A	13522	chr12:6484003:-	ONLY_REF_SPLICE	YES	1134	6	0	0.33	0.0209	0.0104	LOCAL_REARRANGEMENT:-:[4729],TNFRSF1A->Oncogene{Bushman},chr12:6437923-6451280:-,tumor_necrosis_factor_receptor_superfamily_member_1A,SCNN1A->chr12:6456009-6486896:-,sodium_channel_epithelial_1_alpha_subunit	SLR26_KIDNEY	0	0.33	0.0313	FALSE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	AP001432.14--TTC3	2	0	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	SLR26_KIDNEY	1	1	0.0209	TRUE	0	0	0	15	0	TRUE	ACH-000600
SLR26_KIDNEY	ARL4A--PHF14	2	0	ARL4A	1873	chr7:12727353:+	PHF14	32595	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ARL4A->ADP_ribosylation_factor_like_GTPase_4A,chr7:12726481-12730559:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SLR26_KIDNEY	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000600
SLR26_KIDNEY	C7orf73--MEF2B	2	0	C7orf73	2153	chr7:135357554:+	MEF2B	15028	chr19:19293492:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	C7orf73->chr7:135347244-135378166:+,chromosome_7_open_reading_frame_73,MEF2B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:19256377-19303400:-,myocyte_enhancer_factor_2B	SLR26_KIDNEY	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000600
SLR26_KIDNEY	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SLR26_KIDNEY	1	1	0.0209	TRUE	347	1186	183	220	0	FALSE	ACH-000600
SLR26_KIDNEY	DOCK1--ITPR1	2	0	DOCK1	44561	chr10:129202693:+	ITPR1	131700	chr3:4887823:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1	SLR26_KIDNEY	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000600
SLR26_KIDNEY	HIF1A-AS2--HIF1A	2	0	HIF1A-AS2	1213	chr14:62217603:-	HIF1A	23848	chr14:62213652:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	NEIGHBORS_OVERLAP:-:+:[32700],HIF1A-AS2->HIF1A_antisense_RNA_2,chr14:62182276-62217815:-,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	SLR26_KIDNEY	1	1	0.0209	FALSE	0	1	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	KIAA0101--CSNK1G1	1	4	KIAA0101	5437	chr15:64668942:-	CSNK1G1	13392	chr15:64592922:-	ONLY_REF_SPLICE	YES	766	26	0.01	0.16	0.0104	0.0417	NEIGHBORS[8751],KIAA0101->KIAA0101,chr15:64657193-64679886:-,CSNK1G1->casein_kinase_1_gamma_1,chr15:64457716-64648442:-	SLR26_KIDNEY	0.01	0.16	0.0521	FALSE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	KIAA0101--CSNK1G1	1	4	KIAA0101	4274	chr15:64673157:-	CSNK1G1	13392	chr15:64592922:-	ONLY_REF_SPLICE	YES	1115	26	0	0.16	0.0104	0.0417	NEIGHBORS[8751],KIAA0101->KIAA0101,chr15:64657193-64679886:-,CSNK1G1->casein_kinase_1_gamma_1,chr15:64457716-64648442:-	SLR26_KIDNEY	0	0.16	0.0521	FALSE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	NCOR2--UBC	2	0	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SLR26_KIDNEY	1	1	0.0209	TRUE	52	148	13	33	0	FALSE	ACH-000600
SLR26_KIDNEY	NCOR2--UBC	2	0	NCOR2	2329	chr12:125020111:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SLR26_KIDNEY	1	1	0.0209	TRUE	48	117	12	14	0	FALSE	ACH-000600
SLR26_KIDNEY	NDUFA4--PHF14	2	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SLR26_KIDNEY	1	1	0.0209	TRUE	19	32	3	60	0	FALSE	ACH-000600
SLR26_KIDNEY	DPYSL3--CTC-255N20.1	1	3	DPYSL3	5010	chr5:146833112:-	CTC-255N20.1	27137	chr5:146581714:-	ONLY_REF_SPLICE	YES	677	0	0.01	1	0.0104	0.0313	DPYSL3->chr5:146770374-146889619:-,dihydropyrimidinase_like_3,CTC-255N20.1->chr5:146559767-146614422:-	SLR26_KIDNEY	0.01	1	0.0417	FALSE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	TNFAIP8--HSD17B4	1	2	TNFAIP8	1216	chr5:118604602:+	HSD17B4	22456	chr5:118809603:+	ONLY_REF_SPLICE	YES	194	428	0.02	0.01	0.0104	0.0209	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	SLR26_KIDNEY	0.01	0.02	0.0313	FALSE	0	2	0	7	0	FALSE	ACH-000600
SLR26_KIDNEY	AC002066.1--AC073130.1	1	1	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0104	0.0104	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	SLR26_KIDNEY	0.4	1	0.0208	FALSE	0	3	0	33	0	FALSE	ACH-000600
SLR26_KIDNEY	AC002066.1--AC073130.1	1	1	AC002066.1	3291	chr7:116105243:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0104	0.0104	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	SLR26_KIDNEY	0.29	1	0.0208	FALSE	0	0	0	2	0	FALSE	ACH-000600
SLR26_KIDNEY	B4GALT1--BAG1	1	1	B4GALT1	1599	chr9:33166756:-	BAG1	16811	chr9:33262828:-	ONLY_REF_SPLICE	YES	2149	78	0	0.03	0.0104	0.0104	GTEx_v2:{count=2;pct=0.02%;dist=Liver=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Cervix=3},LOCAL_REARRANGEMENT:-:[80464],B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,BAG1->BCL2_associated_athanogene_1,Oncogene{Bushman},chr9:33247818-33264761:-	SLR26_KIDNEY	0	0.03	0.0208	FALSE	0	5	1	5	3	FALSE	ACH-000600
SLR26_KIDNEY	COX10-AS1--SLC38A1	1	1	COX10-AS1	2701	chr17:13937257:-	SLC38A1	27551	chr12:46602910:-	ONLY_REF_SPLICE	NO	7	146	0.22	0.01	0.0104	0.0104	COX10-AS1->COX10_antisense_RNA_1,chr17:13659795-13972812:-,SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1	SLR26_KIDNEY	0.01	0.22	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	DIAPH1--NDFIP1	1	1	DIAPH1	1258	chr5:140998365:-	NDFIP1	34055	chr5:141511373:+	ONLY_REF_SPLICE	YES	89	170	0.02	0.01	0.0104	0.0104	{Klijn_CCL:Lung=1},DIAPH1->chr5:140894583-140998622:-,diaphanous_related_formin_1,NDFIP1->Nedd4_family_interacting_protein_1,chr5:141488070-141534005:+	SLR26_KIDNEY	0.01	0.02	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	DSCR3--TTC3	1	1	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	52	56	0.04	0.03	0.0104	0.0104	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	SLR26_KIDNEY	0.03	0.04	0.0208	TRUE	0	9	0	44	1	FALSE	ACH-000600
SLR26_KIDNEY	EIF2D--CHMP1A	1	1	EIF2D	12869	chr1:206769067:-	CHMP1A	26820	chr16:89713739:-	ONLY_REF_SPLICE	YES	206	434	0.01	0	0.0104	0.0104	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},EIF2D->chr1:206744620-206785904:-,eukaryotic_translation_initiation_factor_2D,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SLR26_KIDNEY	0	0.01	0.0208	FALSE	3	4	1	2	0	FALSE	ACH-000600
SLR26_KIDNEY	FGD4--NQO2	1	1	FGD4	9074	chr12:32717223:+	NQO2	46392	chr6:3006702:+	ONLY_REF_SPLICE	YES	7	75	0.22	0.03	0.0104	0.0104	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+	SLR26_KIDNEY	0.03	0.22	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	HLA-B--MT-ATP8	1	1	HLA-B	2022	chr6:31323944:-	MT-ATP8	7318	chrM:8366:+	ONLY_REF_SPLICE	YES	9436	0	0	1	0.0104	0.0104	HLA-B->chr6:31321649-31324965:-,major_histocompatibility_complex,_class_I,_B,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR26_KIDNEY	0	1	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	ITGA3--RP11-1094H24.3	1	1	ITGA3	13294	chr17:48154811:+	RP11-1094H24.3	26548	chr17:48093762:+	ONLY_REF_SPLICE	YES	4334	0	0	1	0.0104	0.0104	LOCAL_REARRANGEMENT:+:[39124],ITGA3->chr17:48133332-48167845:+,integrin_subunit_alpha_3,RP11-1094H24.3->chr17:48074253-48094208:+	SLR26_KIDNEY	0	1	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	MAP4--ANXA2	1	1	MAP4	5952	chr3:48019355:-	ANXA2	56535	chr15:60656722:-	ONLY_REF_SPLICE	NO	536	5853	0	0	0.0104	0.0104	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,ANXA2->annexin_A2,chr15:60639333-60695082:-	SLR26_KIDNEY	0	0	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	MET--CHCHD3	1	1	MET	4452	chr7:116340338:+	CHCHD3	31567	chr7:132754989:-	ONLY_REF_SPLICE	NO	1580	830	0	0	0.0104	0.0104	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3	SLR26_KIDNEY	0	0	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	RP11-661P17.1--SLCO3A1	1	1	RP11-661P17.1	3525	chr15:92016546:+	SLCO3A1	14431	chr15:92451732:+	ONLY_REF_SPLICE	YES	1	52	0.67	0.04	0.0104	0.0104	GTEx_FI:{Pancreas=[count:3=pct:1.7]},RP11-661P17.1->chr15:91951938-92148441:+,SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1	SLR26_KIDNEY	0.04	0.67	0.0208	TRUE	0	1	0	1	1	TRUE	ACH-000600
SLR26_KIDNEY	RTN4--RPL28	1	1	RTN4	6179	chr2:55277262:-	RPL28	23724	chr19:55897718:+	ONLY_REF_SPLICE	YES	165	21	0.01	0.09	0.0104	0.0104	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	SLR26_KIDNEY	0.01	0.09	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	SEMA3A--EXOC4	1	1	SEMA3A	3820	chr7:84001140:-	EXOC4	54212	chr7:133314798:+	ONLY_REF_SPLICE	NO	221	172	0.01	0.01	0.0104	0.0104	SEMA3A->chr7:83585093-84122040:-,semaphorin_3A,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	SLR26_KIDNEY	0.01	0.01	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000600
SLR26_KIDNEY	SIL1--CTNNA1	1	1	SIL1	15184	chr5:138456724:-	CTNNA1	41730	chr5:138145727:+	ONLY_REF_SPLICE	YES	315	758	0.01	0	0.0104	0.0104	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=6;pct=0.07%;dist=Cells_-_Transformed_fibroblasts=2,Artery_-_Aorta=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1},{Klijn_CCL:Skin=1},LOCAL_INVERSION:-:+:[11686],SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	SLR26_KIDNEY	0	0.01	0.0208	FALSE	0	1	0	2	0	FALSE	ACH-000600
SLR26_KIDNEY	SLC35E1--LUC7L2	1	1	SLC35E1	4135	chr19:16677343:-	LUC7L2	20874	chr7:139083345:+	ONLY_REF_SPLICE	YES	146	110	0.01	0.02	0.0104	0.0104	SLC35E1->chr19:16660642-16683193:-,solute_carrier_family_35_member_E1,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	SLR26_KIDNEY	0.01	0.02	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000600
NCIH2077_LUNG	INPP4B--ANAPC10	71	58	INPP4B	7802	chr4:143646992:-	ANAPC10	63514	chr4:146017263:-	ONLY_REF_SPLICE	YES	44	51	0.75	0.72	0.8874	0.7249	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH2077_LUNG	0.72	0.75	1.6123	TRUE	0	0	0	2	0	TRUE	ACH-000010
NCIH2077_LUNG	TIMM23B--LINC00843	74	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9249	0.325	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2077_LUNG	0.99	1	1.2499	TRUE	508	994	45	981	0	FALSE	ACH-000010
NCIH2077_LUNG	PTMA--NCL	62	8	PTMA	6593	chr2:232577226:+	NCL	15607	chr2:232326275:-	INCL_NON_REF_SPLICE	YES	4510	2511	0.02	0.03	0.7749	0.1	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	NCIH2077_LUNG	0.02	0.03	0.8749	TRUE	0	0	0	5	0	FALSE	ACH-000010
NCIH2077_LUNG	TIMM23--RP11-464F9.1	41	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	452	6	0.09	0.88	0.5124	0.0625	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2077_LUNG	0.09	0.88	0.5749	TRUE	519	3926	326	965	0	FALSE	ACH-000010
NCIH2077_LUNG	MT-TA--MT-TC	41	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5124	0.025	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2077_LUNG	1	1	0.5374	FALSE	462	80	0	856	0	FALSE	ACH-000010
NCIH2077_LUNG	KANSL1--ARL17B	35	22	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	54	67	0.51	0.46	0.4374	0.275	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH2077_LUNG	0.46	0.51	0.7124	TRUE	181	1564	124	196	0	FALSE	ACH-000010
NCIH2077_LUNG	ZNF654--HMGB2	23	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2875	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2077_LUNG	1	1	0.2875	TRUE	0	0	0	518	0	FALSE	ACH-000010
NCIH2077_LUNG	INPP4B--ANAPC10	10	36	INPP4B	7802	chr4:143646992:-	ANAPC10	64641	chr4:146002902:-	ONLY_REF_SPLICE	YES	44	358	0.51	0.11	0.125	0.4499	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH2077_LUNG	0.11	0.51	0.5749	TRUE	0	0	0	2	0	TRUE	ACH-000010
NCIH2077_LUNG	INPP4B--ANAPC10	4	58	INPP4B	8922	chr4:143581930:-	ANAPC10	63514	chr4:146017263:-	ONLY_REF_SPLICE	YES	44	51	0.58	0.55	0.05	0.7249	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH2077_LUNG	0.55	0.58	0.7749	TRUE	0	0	0	2	0	TRUE	ACH-000010
NCIH2077_LUNG	MT-ATP6--MT-CO2	13	12	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	44	2	0.36	0.93	0.1625	0.15	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2077_LUNG	0.36	0.93	0.3125	FALSE	59	21	0	114	0	FALSE	ACH-000010
NCIH2077_LUNG	INPP4B--ANAPC10	1	59	INPP4B	11304	chr4:143481610:-	ANAPC10	63514	chr4:146017263:-	ONLY_REF_SPLICE	NO	37	51	0.62	0.54	0.0125	0.7374	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH2077_LUNG	0.54	0.62	0.7499	TRUE	0	0	0	2	0	TRUE	ACH-000010
NCIH2077_LUNG	FASN--MT-ND2	15	0	FASN	17402	chr17:80038591:-	MT-ND2	23619	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1875	0	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH2077_LUNG	1	1	0.1875	FALSE	5	0	0	5	0	FALSE	ACH-000010
NCIH2077_LUNG	AL589743.1--RP11-536C10.17	13	2	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	8	0	0.65	1	0.1625	0.025	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	NCIH2077_LUNG	0.65	1	0.1875	TRUE	0	33	0	45	33	FALSE	ACH-000010
NCIH2077_LUNG	AP000525.9--LA16c-60G3.6	13	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	9	0	0.61	1	0.1625	0.0125	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH2077_LUNG	0.61	1	0.175	TRUE	0	42	0	133	42	FALSE	ACH-000010
NCIH2077_LUNG	PTMA--NCL	11	9	PTMA	6593	chr2:232577226:+	NCL	15514	chr2:232326368:-	INCL_NON_REF_SPLICE	YES	4510	2107	0	0.01	0.1375	0.1125	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	NCIH2077_LUNG	0	0.01	0.25	TRUE	0	0	0	5	0	FALSE	ACH-000010
NCIH2077_LUNG	MT-ATP6--MT-CO2	7	13	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	46	0	0.3	1	0.0875	0.1625	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2077_LUNG	0.3	1	0.25	FALSE	59	21	0	114	0	FALSE	ACH-000010
NCIH2077_LUNG	MT-TA--MT-TC	9	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1125	0.0375	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2077_LUNG	1	1	0.15	FALSE	462	80	0	856	0	FALSE	ACH-000010
NCIH2077_LUNG	PTMA--NCL	9	3	PTMA	6060	chr2:232576693:+	NCL	16314	chr2:232325568:-	INCL_NON_REF_SPLICE	YES	4948	2574	0	0	0.1125	0.0375	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	NCIH2077_LUNG	0	0	0.15	TRUE	0	0	0	5	0	FALSE	ACH-000010
NCIH2077_LUNG	VENTXP1--MAGEB18	8	7	VENTXP1	2068	chrX:26577521:+	MAGEB18	8554	chrX:26158297:+	INCL_NON_REF_SPLICE	YES	3	6	0.83	0.71	0.1	0.0875	VENTXP1->VENT_homeobox_pseudogene_1,chrX:26576454-26579169:+,MAGEB18->MAGE_family_member_B18,chrX:26156460-26158852:+	NCIH2077_LUNG	0.71	0.83	0.1875	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	RP11-123O10.4--GRIP1	9	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1125	0.025	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2077_LUNG	1	1	0.1375	FALSE	416	2512	207	587	0	FALSE	ACH-000010
NCIH2077_LUNG	RP11-680G10.1--GSE1	9	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	102	1	0.1	0.1125	0.025	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2077_LUNG	0.1	1	0.1375	TRUE	465	1949	224	605	0	FALSE	ACH-000010
NCIH2077_LUNG	PTMA--NCL	8	5	PTMA	6054	chr2:232576687:+	NCL	15461	chr2:232326421:-	INCL_NON_REF_SPLICE	YES	4649	2185	0	0.01	0.1	0.0625	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	NCIH2077_LUNG	0	0.01	0.1625	TRUE	0	0	0	5	0	FALSE	ACH-000010
NCIH2077_LUNG	COL1A2--PTMA	9	0	COL1A2	14602	chr7:94041987:+	PTMA	37657	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1125	0	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH2077_LUNG	1	1	0.1125	TRUE	0	0	0	9	0	TRUE	ACH-000010
NCIH2077_LUNG	MT-ATP6--MT-CO2	9	0	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1125	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2077_LUNG	1	1	0.1125	FALSE	59	21	0	114	0	FALSE	ACH-000010
NCIH2077_LUNG	MT-ATP6--MT-CO2	8	4	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	37	0	0.24	1	0.1	0.05	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2077_LUNG	0.24	1	0.15	FALSE	59	21	0	114	0	FALSE	ACH-000010
NCIH2077_LUNG	RP11-680G10.1--GSE1	7	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	73	1	0.17	0.0875	0.1	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2077_LUNG	0.17	1	0.1875	TRUE	458	1351	185	561	0	FALSE	ACH-000010
NCIH2077_LUNG	C15orf57--CBX3	7	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	67	52	0.17	0.21	0.0875	0.0875	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2077_LUNG	0.17	0.21	0.175	TRUE	267	562	48	632	0	FALSE	ACH-000010
NCIH2077_LUNG	MT-TA--MT-TC	8	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1	0.0125	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2077_LUNG	1	1	0.1125	FALSE	462	80	0	856	0	FALSE	ACH-000010
NCIH2077_LUNG	ABCE1--RP11-223C24.2	8	0	ABCE1	1488	chr4:146019571:+	RP11-223C24.2	22874	chr4:143439856:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1	0	ABCE1->ATP_binding_cassette_subfamily_E_member_1,chr4:146019084-146050331:+,RP11-223C24.2->chr4:143435599-143440136:+	NCIH2077_LUNG	1	1	0.1	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	CTD-2034I4.1--CTD-2034I4.2	8	0	CTD-2034I4.1	1098	chr15:81719886:+	CTD-2034I4.2	10602	chr15:81959350:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1	0	CTD-2034I4.1->chr15:81719789-82047558:+,CTD-2034I4.2->chr15:81846344-81989121:+	NCIH2077_LUNG	1	1	0.1	TRUE	0	1	0	1	1	TRUE	ACH-000010
NCIH2077_LUNG	NPM1P24--SET	8	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2077_LUNG	1	1	0.1	TRUE	0	0	0	434	0	FALSE	ACH-000010
NCIH2077_LUNG	MT-TA--MT-TC	6	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.075	0.0875	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2077_LUNG	1	1	0.1625	FALSE	462	80	0	856	0	FALSE	ACH-000010
NCIH2077_LUNG	DSCR4--KCNJ6	6	3	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.075	0.0375	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	NCIH2077_LUNG	0.6	1	0.1125	FALSE	0	24	0	27	0	FALSE	ACH-000010
NCIH2077_LUNG	MT-ATP6--MT-CO2	5	7	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	76	8	0.14	0.6	0.0625	0.0875	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2077_LUNG	0.14	0.6	0.15	FALSE	59	21	0	114	0	FALSE	ACH-000010
NCIH2077_LUNG	RP11-114H21.2--CTB-1I21.1	2	19	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	32	0	0.4	1	0.025	0.2375	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	NCIH2077_LUNG	0.4	1	0.2625	TRUE	0	2	0	12	2	TRUE	ACH-000010
NCIH2077_LUNG	INPP4B--ANAPC10	2	18	INPP4B	2181	chr4:143767362:-	ANAPC10	63514	chr4:146017263:-	ONLY_REF_SPLICE	YES	16	51	0.56	0.28	0.025	0.225	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH2077_LUNG	0.28	0.56	0.25	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	PTMA--NCL	6	2	PTMA	6054	chr2:232576687:+	NCL	16401	chr2:232325481:-	INCL_NON_REF_SPLICE	YES	4649	2125	0	0	0.075	0.025	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	NCIH2077_LUNG	0	0	0.1	TRUE	0	0	0	5	0	FALSE	ACH-000010
NCIH2077_LUNG	PTMA--NCL	4	8	PTMA	6593	chr2:232577226:+	NCL	15580	chr2:232326302:-	INCL_NON_REF_SPLICE	YES	4510	2136	0	0.01	0.05	0.1	GTEx&tcga_normals:1/3694=0.03%,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,NCL->chr2:232318242-232348352:-,nucleolin	NCIH2077_LUNG	0	0.01	0.15	TRUE	0	0	0	5	0	FALSE	ACH-000010
NCIH2077_LUNG	TGFB2--RRP15	6	0	TGFB2	4061	chr1:218578674:+	RRP15	20024	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.075	0	LOCAL_REARRANGEMENT:+:[8252],TGFB2->Oncogene{Bushman},chr1:218519577-218617961:+,transforming_growth_factor_beta_2,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	NCIH2077_LUNG	1	1	0.075	TRUE	0	1	1	1	0	TRUE	ACH-000010
NCIH2077_LUNG	MT-ATP6--MT-CO2	3	9	MT-ATP6	1516	chrM:9042:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	5	8	0.71	0.6	0.0375	0.1125	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2077_LUNG	0.6	0.71	0.15	FALSE	59	21	0	114	0	FALSE	ACH-000010
NCIH2077_LUNG	LRFN5--MYO3B	5	0	LRFN5	1993	chr14:42077765:+	MYO3B	28567	chr2:171225732:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0625	0	LRFN5->chr14:42076773-42373752:+,leucine_rich_repeat_and_fibronectin_type_III_domain_containing_5,MYO3B->chr2:171034655-171511681:+,myosin_IIIB	NCIH2077_LUNG	1	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	RP11-120D5.1--MID1	4	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	1	0.55	0.86	0.05	0.025	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2077_LUNG	0.55	0.86	0.075	FALSE	16	356	14	466	0	FALSE	ACH-000010
NCIH2077_LUNG	AC079305.11--AC073636.1	4	1	AC079305.11	4415	chr2:177921000:-	AC073636.1	12747	chr2:177711105:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.05	0.0125	AC079305.11->chr2:177855236-178029244:-,AC073636.1->chr2:177710721-177714156:-	NCIH2077_LUNG	1	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	C15orf57--CBX3	3	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	64	54	0.11	0.13	0.0375	0.0625	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2077_LUNG	0.11	0.13	0.1	TRUE	267	562	48	632	0	FALSE	ACH-000010
NCIH2077_LUNG	MT-TA--MT-TC	4	1	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0.0125	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2077_LUNG	1	1	0.0625	FALSE	462	80	0	856	0	FALSE	ACH-000010
NCIH2077_LUNG	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1083	chr6:30691572:-	TUBBP2	4900	chr13:41959193:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH2077_LUNG	1	1	0.05	TRUE	0	1	0	48	1	FALSE	ACH-000010
NCIH2077_LUNG	ASF1B--RPLP1	3	1	ASF1B	1546	chr19:14247223:-	RPLP1	8960	chr15:69745157:+	INCL_NON_REF_SPLICE	YES	592	0	0.01	1	0.0375	0.0125	ASF1B->anti-silencing_function_1B_histone_chaperone,chr19:14230321-14247768:-,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	NCIH2077_LUNG	0.01	1	0.05	FALSE	0	0	0	1	0	FALSE	ACH-000010
NCIH2077_LUNG	INPP4B--ANAPC10	1	9	INPP4B	2181	chr4:143767362:-	ANAPC10	65849	chr4:145985844:-	ONLY_REF_SPLICE	YES	16	356	0.38	0.03	0.0125	0.1125	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH2077_LUNG	0.03	0.38	0.125	TRUE	0	0	0	1	0	FALSE	ACH-000010
NCIH2077_LUNG	MT-ATP6--MT-CO2	3	1	MT-ATP6	1134	chrM:8660:+	MT-CO2	4984	chrM:7888:+	INCL_NON_REF_SPLICE	YES	36	7	0.1	0.36	0.0375	0.0125	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2077_LUNG	0.1	0.36	0.05	FALSE	59	21	0	114	0	FALSE	ACH-000010
NCIH2077_LUNG	PHF3--PTP4A1	3	1	PHF3	3273	chr6:64356700:+	PTP4A1	35093	chr6:64286341:+	ONLY_REF_SPLICE	YES	62	274	0.06	0.01	0.0375	0.0125	LOCAL_REARRANGEMENT:+:[52233],PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+,PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1	NCIH2077_LUNG	0.01	0.06	0.05	FALSE	0	0	0	4	0	FALSE	ACH-000010
NCIH2077_LUNG	ENO1--H1F0	3	0	ENO1	10842	chr1:8924027:-	H1F0	16841	chr22:38201603:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,H1F0->H1_histone_family_member_0,chr22:38201114-38203442:+	NCIH2077_LUNG	1	1	0.0375	TRUE	0	0	0	4	0	TRUE	ACH-000010
NCIH2077_LUNG	IQCH-AS1--SRGAP2B	3	0	IQCH-AS1	2653	chr15:67812530:-	SRGAP2B	22219	chr1:144013901:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0375	0	IQCH-AS1->IQCH_antisense_RNA_1,chr15:67695957-67814182:-,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	NCIH2077_LUNG	1	1	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	LINC01036--LINC01037	3	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0375	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	NCIH2077_LUNG	1	1	0.0375	FALSE	0	26	0	50	0	FALSE	ACH-000010
NCIH2077_LUNG	LINC01036--LINC01037	3	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0375	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	NCIH2077_LUNG	1	1	0.0375	FALSE	0	24	0	62	0	FALSE	ACH-000010
NCIH2077_LUNG	MT-ATP6--MT-CO2	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2077_LUNG	1	1	0.0375	FALSE	59	21	0	114	0	FALSE	ACH-000010
NCIH2077_LUNG	MT-ATP6--MT-CO2	3	0	MT-ATP6	1072	chrM:8598:+	MT-CO2	4716	chrM:7620:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2077_LUNG	1	1	0.0375	FALSE	59	21	0	114	0	FALSE	ACH-000010
NCIH2077_LUNG	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2077_LUNG	1	1	0.0375	TRUE	0	0	0	434	0	FALSE	ACH-000010
NCIH2077_LUNG	QKI--PACRG	3	0	QKI	9463	chr6:163899928:+	PACRG	44484	chr6:163735859:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0375	0	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	NCIH2077_LUNG	1	1	0.0375	TRUE	0	1	0	3	1	TRUE	ACH-000010
NCIH2077_LUNG	TMPRSS15--DYM	3	0	TMPRSS15	1081	chr21:19858117:-	DYM	34562	chr18:46956817:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0375	0	TMPRSS15->chr21:19641433-19858197:-,transmembrane_protease,_serine_15,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	NCIH2077_LUNG	1	1	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	LYPLAL1--RRP15	1	6	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	YES	607	285	0.01	0.02	0.0125	0.075	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	NCIH2077_LUNG	0.01	0.02	0.0875	FALSE	0	12	0	13	2	FALSE	ACH-000010
NCIH2077_LUNG	PROSC--GNAS	2	2	PROSC	2996	chr8:37623873:+	GNAS	28232	chr20:57470667:+	ONLY_REF_SPLICE	YES	666	1158	0.01	0	0.025	0.025	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH2077_LUNG	0	0.01	0.05	FALSE	0	3	1	3	0	FALSE	ACH-000010
NCIH2077_LUNG	KANSL1--ARL17B	1	5	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	45	67	0.12	0.08	0.0125	0.0625	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH2077_LUNG	0.08	0.12	0.075	TRUE	105	90	7	93	0	FALSE	ACH-000010
NCIH2077_LUNG	MIR210HG--DNM3OS	2	1	MIR210HG	1106	chr11:568352:-	DNM3OS	7156	chr1:172113577:-	ONLY_REF_SPLICE	YES	8	70	0.27	0.04	0.025	0.0125	HGNC_GENEFAM,MIR210HG->MIR210_host_gene,chr11:565660-568457:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	NCIH2077_LUNG	0.04	0.27	0.0375	TRUE	0	2	0	3	2	TRUE	ACH-000010
NCIH2077_LUNG	ATRX--PGK1	2	0	ATRX	1235	chrX:77041468:-	PGK1	52000	chrX:77365364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1	NCIH2077_LUNG	1	1	0.025	TRUE	0	1	0	9	0	TRUE	ACH-000010
NCIH2077_LUNG	C1orf145--ODF2L	2	0	C1orf145	1243	chr1:228401123:-	ODF2L	33695	chr1:86814561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	C1orf145->chr1:228391207-228401365:-,chromosome_1_open_reading_frame_145,ODF2L->chr1:86814344-86862023:-,outer_dense_fiber_of_sperm_tails_2_like	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	C2orf42--RTN4	2	0	C2orf42	2365	chr2:70418050:-	RTN4	24883	chr2:55255356:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	CDC73--EXOC3	2	0	CDC73	2651	chr1:193094347:+	EXOC3	34914	chr5:462075:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	CDC73->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cell_division_cycle_73,chr1:193091147-193223031:+,EXOC3->chr5:443273-472052:+,exocyst_complex_component_3	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	CHFR--FGD4	1	4	CHFR	2239	chr12:133522207:-	FGD4	42528	chr12:32717071:+	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.0125	0.05	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+	NCIH2077_LUNG	0.71	1	0.0625	TRUE	0	0	0	2	0	TRUE	ACH-000010
NCIH2077_LUNG	EIF5A--EIF4A1	2	0	EIF5A	1754	chr17:7211071:+	EIF4A1	13787	chr17:7480374:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	EIF5A->chr17:7210318-7215774:+,eukaryotic_translation_initiation_factor_5A,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	FBXO17--CLPX	2	0	FBXO17	1325	chr19:39466226:-	CLPX	21565	chr15:65451089:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	FBXO17->F-box_protein_17,chr19:39432044-39466550:-,CLPX->caseinolytic_mitochondrial_matrix_peptidase_chaperone_subunit,chr15:65440557-65477680:-	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	GLOD4--UBR5	2	0	GLOD4	7773	chr17:674565:-	UBR5	66134	chr8:103269945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GLOD4->chr17:660337-685581:-,glyoxalase_domain_containing_4,UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	HNRNPA2B1--RPL4	2	0	HNRNPA2B1	1958	chr7:26240192:-	RPL4	19449	chr15:66795088:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,RPL4->chr15:66790355-66816870:-,ribosomal_protein_L4	NCIH2077_LUNG	1	1	0.025	TRUE	0	1	0	2	0	TRUE	ACH-000010
NCIH2077_LUNG	OXCT1--MARCKSL1	2	0	OXCT1	5725	chr5:41850132:-	MARCKSL1	25375	chr1:32800698:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	OXCT1->3-oxoacid_CoA-transferase_1,chr5:41730167-41870621:-,MARCKSL1->MARCKS-like_1,chr1:32799433-32801980:-	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	PDCD2--SHPRH	2	0	PDCD2	2636	chr6:170892145:-	SHPRH	30446	chr6:146248413:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	PDCD2->chr6:170884383-170893780:-,programmed_cell_death_2,SHPRH->SNF2_histone_linker_PHD_RING_helicase,chr6:146185381-146285559:-	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	PIEZO1--CDK10	2	0	PIEZO1	10811	chr16:88799686:-	CDK10	39797	chr16:89761701:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1,CDK10->chr16:89747145-89762772:+,cyclin-dependent_kinase_10	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	SDCBP--SRP9	2	0	SDCBP	4943	chr8:59477625:+	SRP9	17452	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	2	0	TRUE	ACH-000010
NCIH2077_LUNG	SF1--SAGE1	2	0	SF1	3289	chr11:64543970:-	SAGE1	22207	chrX:134988183:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	SF1->chr11:64532078-64546258:-,splicing_factor_1,SAGE1->chrX:134971374-134995220:+,sarcoma_antigen_1	NCIH2077_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	PARK2--PACRG	1	3	PARK2	2274	chr6:162864342:-	PACRG	27145	chr6:163483182:+	ONLY_REF_SPLICE	YES	9	120	0.31	0.03	0.0125	0.0375	GTEx_v2:{count=5;pct=0.06%;dist=Testis=2,Pituitary=1,Uterus=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NEIGHBORS_OVERLAP:-:+:[639],PARK2->ArcherDX_panel,FoundationOne_panel,chr6:161768452-163148803:-,parkin_RBR_E3_ubiquitin_protein_ligase,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	NCIH2077_LUNG	0.03	0.31	0.05	FALSE	0	1	0	1	0	FALSE	ACH-000010
NCIH2077_LUNG	EIF3H--TRPS1	1	2	EIF3H	3765	chr8:117767905:-	TRPS1	34674	chr8:116599831:-	ONLY_REF_SPLICE	YES	2079	54	0	0.05	0.0125	0.025	EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1	NCIH2077_LUNG	0	0.05	0.0375	FALSE	0	0	0	1	0	FALSE	ACH-000010
NCIH2077_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0125	0.025	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2077_LUNG	0.75	1	0.0375	FALSE	515	4851	409	746	0	FALSE	ACH-000010
NCIH2077_LUNG	SPRED1--RP11-474G23.1	1	2	SPRED1	1892	chr15:38545418:+	RP11-474G23.1	28379	chr2:68374699:-	ONLY_REF_SPLICE	NO	101	87	0.03	0.03	0.0125	0.025	SPRED1->chr15:38544527-38649450:+,sprouty_related_EVH1_domain_containing_1,RP11-474G23.1->chr2:68358370-68488362:-	NCIH2077_LUNG	0.03	0.03	0.0375	TRUE	0	0	0	1	0	FALSE	ACH-000010
NCIH2077_LUNG	AGBL4--BEND5	1	1	AGBL4	8128	chr1:49332863:-	BEND5	28501	chr1:49227142:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0125	0.0125	NEIGHBORS_OVERLAP:-:-:[49446],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	NCIH2077_LUNG	1	1	0.025	FALSE	0	10	1	4	0	FALSE	ACH-000010
NCIH2077_LUNG	AGBL4--BEND5	1	1	AGBL4	7088	chr1:49511256:-	BEND5	31391	chr1:49208443:-	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0125	0.0125	NEIGHBORS_OVERLAP:-:-:[49446],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	NCIH2077_LUNG	0.5	1	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000010
NCIH2077_LUNG	ANO7--HDLBP	1	1	ANO7	20467	chr2:242157796:+	HDLBP	33898	chr2:242207956:-	ONLY_REF_SPLICE	NO	43	260	0.04	0.01	0.0125	0.0125	GTEx_FI:{Brain=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[1887],ANO7->anoctamin_7,chr2:242127924-242164792:+,HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein	NCIH2077_LUNG	0.01	0.04	0.025	FALSE	2	1	0	3	0	FALSE	ACH-000010
NCIH2077_LUNG	ARHGAP19--SRP9	1	1	ARHGAP19	3191	chr10:99025836:-	SRP9	22984	chr1:225965637:+	ONLY_REF_SPLICE	NO	40	89	0.05	0.02	0.0125	0.0125	ARHGAP19->Rho_GTPase_activating_protein_19,chr10:98978996-99052413:-,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	NCIH2077_LUNG	0.02	0.05	0.025	TRUE	0	0	0	2	0	FALSE	ACH-000010
NCIH2077_LUNG	AXIN2--CEP112	1	1	AXIN2	1823	chr17:63556943:-	CEP112	55633	chr17:63637183:-	ONLY_REF_SPLICE	YES	90	279	0.02	0.01	0.0125	0.0125	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[73891],AXIN2->Oncogene{Bushman},axin_2,chr17:63524681-63557765:-,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	NCIH2077_LUNG	0.01	0.02	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000010
NCIH2077_LUNG	DNAJB4--CEP290	1	1	DNAJB4	1445	chr1:78445303:+	CEP290	33857	chr12:88500875:-	ONLY_REF_SPLICE	YES	12	21	0.14	0.09	0.0125	0.0125	DNAJB4->DnaJ_heat_shock_protein_family_(Hsp40)_member_B4,chr1:78444859-78483648:+,CEP290->centrosomal_protein_290,chr12:88442793-88535993:-	NCIH2077_LUNG	0.09	0.14	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000010
NCIH2077_LUNG	EEF1D--CYHR1	1	1	EEF1D	3127	chr8:144679049:-	CYHR1	30366	chr8:145678843:-	ONLY_REF_SPLICE	YES	99	72	0.02	0.03	0.0125	0.0125	EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	NCIH2077_LUNG	0.02	0.03	0.025	TRUE	0	0	0	1	0	FALSE	ACH-000010
NCIH2077_LUNG	EXOC6--FERMT2	1	1	EXOC6	3445	chr10:94608391:+	FERMT2	46463	chr14:53331571:-	ONLY_REF_SPLICE	YES	24	110	0.08	0.02	0.0125	0.0125	EXOC6->chr10:94590935-94819250:+,exocyst_complex_component_6,FERMT2->chr14:53323986-53419153:-,fermitin_family_member_2	NCIH2077_LUNG	0.02	0.08	0.025	TRUE	0	0	0	1	0	FALSE	ACH-000010
NCIH2077_LUNG	FAP--IFIH1	1	1	FAP	3036	chr2:163099418:-	IFIH1	38731	chr2:163163365:-	ONLY_REF_SPLICE	YES	87	182	0.02	0.01	0.0125	0.0125	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[21928],FAP->chr2:163027194-163101661:-,fibroblast_activation_protein_alpha,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	NCIH2077_LUNG	0.01	0.02	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000010
NCIH2077_LUNG	FRS2--GNAS	1	1	FRS2	1182	chr12:69864310:+	GNAS	39544	chr20:57470667:+	ONLY_REF_SPLICE	NO	44	1158	0.04	0	0.0125	0.0125	GTEx&tcga_normals:1/3694=0.03%,FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH2077_LUNG	0	0.04	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000010
NCIH2077_LUNG	GDAP1--RP11-758M4.1	1	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	56	0	0.03	1	0.0125	0.0125	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH2077_LUNG	0.03	1	0.025	TRUE	7	28	0	43	0	FALSE	ACH-000010
NCIH2077_LUNG	NQO2--CSDE1	1	1	NQO2	9651	chr6:3006793:+	CSDE1	26838	chr1:115282346:-	ONLY_REF_SPLICE	YES	247	878	0.01	0	0.0125	0.0125	NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	NCIH2077_LUNG	0	0.01	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000010
NCIH2077_LUNG	PRTG--ZFAND6	1	1	PRTG	3228	chr15:56032580:-	ZFAND6	46804	chr15:80412670:+	ONLY_REF_SPLICE	NO	12	512	0.14	0	0.0125	0.0125	PRTG->chr15:55903744-56035288:-,protogenin,ZFAND6->chr15:80351910-80430735:+,zinc_finger_AN1-type_containing_6	NCIH2077_LUNG	0	0.14	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000010
NCIH2077_LUNG	QRSL1--ATG5	1	1	QRSL1	1128	chr6:107077580:+	ATG5	21400	chr6:106740981:-	ONLY_REF_SPLICE	YES	46	158	0.04	0.01	0.0125	0.0125	QRSL1->chr6:107077453-107116292:+,glutaminyl-tRNA_synthase_(glutamine-hydrolyzing)-like_1,ATG5->autophagy_related_5,chr6:106632351-106773666:-	NCIH2077_LUNG	0.01	0.04	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000010
NCIH2077_LUNG	RP1-34H18.1--RP11-781A6.1	1	1	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0125	0.0125	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	NCIH2077_LUNG	1	1	0.025	TRUE	94	160	11	37	0	FALSE	ACH-000010
NCIH2077_LUNG	RPL22--PRRX1	1	1	RPL22	8153	chr1:6252990:-	PRRX1	16750	chr1:170633447:+	ONLY_REF_SPLICE	YES	3587	99	0	0.02	0.0125	0.0125	RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22,PRRX1->Oncogene{Bushman},chr1:170631869-170708560:+,paired_related_homeobox_1	NCIH2077_LUNG	0	0.02	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000010
NCIH2077_LUNG	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	629	1	0	0.0125	0.0125	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	NCIH2077_LUNG	0	1	0.025	FALSE	0	59	0	125	0	FALSE	ACH-000010
NCIH2077_LUNG	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0125	0.0125	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2077_LUNG	1	1	0.025	TRUE	62	24	1	171	0	FALSE	ACH-000010
NCIH2077_LUNG	TRAF3IP2-AS1--RPF2	1	1	TRAF3IP2-AS1	2351	chr6:111806064:+	RPF2	25428	chr6:111345386:+	ONLY_REF_SPLICE	NO	50	229	0.04	0.01	0.0125	0.0125	TRAF3IP2-AS1->TRAF3IP2_antisense_RNA_1,chr6:111804714-111919505:+,RPF2->chr6:111303218-111349466:+,ribosome_production_factor_2_homolog	NCIH2077_LUNG	0.01	0.04	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000010
NCIH2077_LUNG	UCHL5--CDC73	1	1	UCHL5	4093	chr1:193018876:-	CDC73	32713	chr1:193172925:+	ONLY_REF_SPLICE	YES	616	301	0	0.01	0.0125	0.0125	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[61910],UCHL5->Oncogene{Bushman},chr1:192981380-193029237:-,ubiquitin_C-terminal_hydrolase_L5,CDC73->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cell_division_cycle_73,chr1:193091147-193223031:+	NCIH2077_LUNG	0	0.01	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000010
NCIH2077_LUNG	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	2556	55	0	0.04	0.0125	0.0125	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NCIH2077_LUNG	0	0.04	0.025	FALSE	6	50	7	115	0	FALSE	ACH-000010
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBC1D23--TDRD12	242	4	TBC1D23	1072	chr3:99979915:+	TDRD12	53079	chr19:33308995:+	ONLY_REF_SPLICE	YES	1	0	1	1	2.9249	0.0483	TBC1D23->TBC1_domain_family_member_23,chr3:99979844-100044095:+,TDRD12->chr19:33210659-33320483:+,tudor_domain_containing_12	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.9732	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	201	94	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	59	89	0.83	0.77	2.4294	1.1361	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.83	3.5655	TRUE	181	1564	124	196	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4R--KIAA0556	171	91	IL4R	16990	chr16:27370315:+	KIAA0556	31771	chr16:27659925:+	ONLY_REF_SPLICE	YES	136	7	0.66	0.97	2.0668	1.0999	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	0.97	3.1667	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	165	54	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.9942	0.6527	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.6469	TRUE	477	1352	189	275	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGSF3--GGT1	156	76	IGSF3	13001	chr1:117131316:-	GGT1	26899	chr22:25003921:+	ONLY_REF_SPLICE	YES	584	57	0.28	0.8	1.8855	0.9186	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.8	2.8041	TRUE	1	1	0	8	1	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPUL2--TTC9C	125	25	HNRNPUL2	7032	chr11:62487495:-	TTC9C	16296	chr11:62496295:+	ONLY_REF_SPLICE	YES	316	94	0.32	0.61	1.5108	0.3022	LOCAL_INVERSION:-:+:[720],HNRNPUL2->chr11:62480102-62494821:-,heterogeneous_nuclear_ribonucleoprotein_U-like_2,TTC9C->chr11:62495541-62507765:+,tetratricopeptide_repeat_domain_9C	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.61	1.813	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	122	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4745	0.3868	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.8613	TRUE	508	994	45	981	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	100	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2086	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2086	FALSE	369	2501	205	193	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4R--KIAA0556	61	103	IL4R	18040	chr16:27372136:+	KIAA0556	31771	chr16:27659925:+	ONLY_REF_SPLICE	YES	138	7	0.54	0.96	0.7373	1.2449	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.96	1.9822	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	67	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	179	6	0.29	0.92	0.8098	0.0725	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.92	0.8823	TRUE	519	3926	326	965	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	49	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5922	0.0846	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6768	FALSE	462	80	0	856	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	49	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5922	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5922	TRUE	0	0	0	518	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4R--KIAA0556	36	32	IL4R	16990	chr16:27370315:+	KIAA0556	34032	chr16:27689050:+	ONLY_REF_SPLICE	YES	136	79	0.33	0.46	0.4351	0.3868	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.46	0.8219	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGSF3--GGT1	19	69	IGSF3	13000	chr1:117131317:-	GGT1	26901	chr22:25003923:+	INCL_NON_REF_SPLICE	YES	584	56	0.13	0.61	0.2296	0.834	GTEx_FI:{Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},NUCLCLUST,IGSF3->chr1:117117031-117210375:-,immunoglobulin_superfamily_member_3,GGT1->chr22:24979718-25024972:+,gamma-glutamyltransferase_1	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.61	1.0636	TRUE	1	1	0	8	1	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	24	37	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.2901	0.4472	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.7373	TRUE	274	363	69	150	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4R--KIAA0556	1	103	IL4R	18245	chr16:27372341:+	KIAA0556	31771	chr16:27659925:+	ONLY_REF_SPLICE	YES	149	7	0.41	0.94	0.0121	1.2449	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.94	1.257	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23A--RAB34	23	13	RPL23A	2498	chr17:27047908:+	RAB34	10878	chr17:27043076:-	ONLY_REF_SPLICE	YES	3198	2	0.01	0.95	0.278	0.1571	LOCAL_INVERSION:+:-:[964],RPL23A->chr17:27046411-27051377:+,ribosomal_protein_L23a,RAB34->RAB34,_member_RAS_oncogene_family,chr17:27041299-27045447:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.95	0.4351	TRUE	0	0	0	1	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	25	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3022	0.0121	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3143	FALSE	499	1288	110	792	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	23	4	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	19	1	0.59	0.278	0.0483	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.3263	TRUE	347	1186	183	220	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	10	46	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1209	0.556	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6769	FALSE	369	2501	205	193	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	21	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2538	0.0121	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2659	FALSE	499	1288	110	792	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	7	57	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0846	0.6889	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7735	TRUE	160	277	29	98	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JAK2--IGKV1OR10-1	19	7	JAK2	1990	chr9:4986022:+	IGKV1OR10-1	30968	chr10:42680942:+	ONLY_REF_SPLICE	YES	90	0	0.22	1	0.2296	0.0846	JAK2->ArcherDX_panel,FoundationOne_panel,Janus_kinase_2,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:4985033-5128183:+,IGKV1OR10-1->chr10:42680787-42681239:+,immunoglobulin_kappa_variable_1/OR10-1_(pseudogene)	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.3142	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	18	5	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2176	0.0604	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.278	FALSE	46	201	11	112	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	17	7	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2055	0.0846	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2901	TRUE	13	49	2	38	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4R--KIAA0556	9	38	IL4R	18040	chr16:27372136:+	KIAA0556	34032	chr16:27689050:+	ONLY_REF_SPLICE	YES	138	79	0.25	0.37	0.1088	0.4593	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.37	0.5681	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL4R--KIAA0556	4	47	IL4R	18040	chr16:27372136:+	KIAA0556	32903	chr16:27665929:+	ONLY_REF_SPLICE	YES	138	45	0.27	0.53	0.0483	0.5681	IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,KIAA0556->KIAA0556,chr16:27561454-27791690:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.53	0.6164	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTC37--NR2F1-AS1	11	13	TTC37	35519	chr5:94818177:-	NR2F1-AS1	57744	chr5:92774447:-	ONLY_REF_SPLICE	YES	40	12	0.38	0.67	0.1329	0.1571	TTC37->chr5:94799599-94890711:-,tetratricopeptide_repeat_domain_37,NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.67	0.29	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ITGB3BP	14	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1692	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1692	TRUE	0	6	0	9	2	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	5	36	RP11-444D3.1	8520	chr12:24430161:-	SOX5	17760	chr12:24048958:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0604	0.4351	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.4955	TRUE	274	363	69	150	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV38-1--TRAJ48	12	3	TRAV38-1	1588	chr14:22740438:+	TRAJ48	4597	chr14:22959479:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.145	0.0363	HGNC_GENEFAM,TRAV38-1->T_cell_receptor_alpha_variable_38-1,chr14:22739851-22740446:+,TRAJ48->T_cell_receptor_alpha_joining_48,chr14:22959479-22959541:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1813	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	12	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.145	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.145	FALSE	369	2501	205	193	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.1088	0.1209	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.2297	FALSE	499	1288	110	792	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	9	10	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1088	0.1209	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2297	FALSE	369	2501	205	193	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NSFP1--FAM134C	9	10	NSFP1	8226	chr17:44503048:+	FAM134C	21387	chr17:40744180:-	ONLY_REF_SPLICE	YES	33	40	0.37	0.32	0.1088	0.1209	NSFP1->N-ethylmaleimide-sensitive_factor_pseudogene_1,chr17:44450221-44564507:+,FAM134C->chr17:40731531-40762641:-,family_with_sequence_similarity_134_member_C	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.37	0.2297	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-316P17.2--RP5-1050E16.2	11	2	RP11-316P17.2	1338	chr9:92316903:+	RP5-1050E16.2	8236	chr9:92522698:+	ONLY_REF_SPLICE	YES	367	0	0.03	1	0.1329	0.0242	GTEx_FI:{Lung=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},RP11-316P17.2->chr9:92316566-92334585:+,RP5-1050E16.2->chr9:92501142-92523200:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.1571	TRUE	2	7	0	5	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	9	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1088	0.1088	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2176	FALSE	462	80	0	856	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	3	33	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0.3988	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4351	FALSE	369	2501	205	193	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTC37--NR2F1-AS1	8	11	TTC37	35519	chr5:94818177:-	NR2F1-AS1	61871	chr5:92747215:-	ONLY_REF_SPLICE	YES	40	8	0.32	0.7	0.0967	0.1329	TTC37->chr5:94799599-94890711:-,tetratricopeptide_repeat_domain_37,NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.7	0.2296	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	25	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0.3022	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3505	FALSE	369	2501	205	193	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--C9orf3	10	0	MIR142	1039	chr17:56409831:-	C9orf3	42418	chr9:97848964:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1209	0	MIR142->chr17:56408245-56409869:-,microRNA_142,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1209	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	9	2	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	4	1	0.73	0.1088	0.0242	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	0.133	TRUE	67	49	0	25	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTC37--NR2F1-AS1	6	13	TTC37	35519	chr5:94818177:-	NR2F1-AS1	56697	chr5:92831809:-	ONLY_REF_SPLICE	YES	40	13	0.32	0.59	0.0725	0.1571	TTC37->chr5:94799599-94890711:-,tetratricopeptide_repeat_domain_37,NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.59	0.2296	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PUS10--TG	8	4	PUS10	23116	chr2:61167934:-	TG	76247	chr8:134042066:+	INCL_NON_REF_SPLICE	YES	8	0	0.6	1	0.0967	0.0483	PUS10->Oncogene{Bushman},chr2:61167357-61245394:-,pseudouridylate_synthase_10,TG->chr8:133879203-134147147:+,thyroglobulin	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.145	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	12	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0.145	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2054	FALSE	462	80	0	856	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	8	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0967	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0967	FALSE	369	2501	205	193	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	7	2	LINC00299	17125	chr2:8200478:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	4	1	0.69	0.0846	0.0242	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	0.1088	TRUE	20	19	0	15	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	2	20	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	26	0	0.46	1	0.0242	0.2417	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	1	0.2659	TRUE	16	11	2	20	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM134C--PLCD3	6	2	FAM134C	2538	chr17:40761104:-	PLCD3	21221	chr17:43198739:-	ONLY_REF_SPLICE	YES	47	9	0.15	0.47	0.0725	0.0242	FAM134C->chr17:40731531-40762641:-,family_with_sequence_similarity_134_member_C,PLCD3->chr17:43186335-43210721:-,phospholipase_C_delta_3	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.47	0.0967	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	59	17	0.14	0.37	0.0604	0.0604	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.37	0.1208	TRUE	267	562	48	632	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	2	17	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	72	89	0.21	0.18	0.0242	0.2055	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.21	0.2297	TRUE	105	90	7	93	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0725	0.0121	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0846	FALSE	462	80	0	856	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23A--RAB34	3	13	RPL23A	2498	chr17:27047908:+	RAB34	9942	chr17:27044012:-	ONLY_REF_SPLICE	YES	3198	1	0	0.94	0.0363	0.1571	LOCAL_INVERSION:+:-:[964],RPL23A->chr17:27046411-27051377:+,ribosomal_protein_L23a,RAB34->RAB34,_member_RAS_oncogene_family,chr17:27041299-27045447:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.94	0.1934	TRUE	0	0	0	1	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23A--RAB34	3	13	RPL23A	2498	chr17:27047908:+	RAB34	10875	chr17:27043079:-	ONLY_REF_SPLICE	YES	3198	2	0	0.89	0.0363	0.1571	LOCAL_INVERSION:+:-:[964],RPL23A->chr17:27046411-27051377:+,ribosomal_protein_L23a,RAB34->RAB34,_member_RAS_oncogene_family,chr17:27041299-27045447:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.89	0.1934	TRUE	0	0	0	1	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	6	0	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0725	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0725	FALSE	101	855	57	72	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	12	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0363	0.145	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.1813	FALSE	499	1288	110	792	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0725	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0725	FALSE	369	2501	205	193	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	4	6	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	1	3272	0.91	0	0.0483	0.0725	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.91	0.1208	FALSE	26	124	4	93	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	10	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0.1209	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1572	FALSE	462	80	0	856	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM134C--NSF	5	1	FAM134C	9950	chr17:40737143:-	NSF	32255	chr17:44782125:+	ONLY_REF_SPLICE	YES	51	40	0.11	0.13	0.0604	0.0121	FAM134C->chr17:40731531-40762641:-,family_with_sequence_similarity_134_member_C,NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.13	0.0725	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	5	0	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0604	FALSE	101	855	57	72	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	4	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0.0483	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0966	FALSE	499	1288	110	792	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	4	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0.0483	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0966	FALSE	499	1288	110	792	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-254I22.1--CTD-2337A12.1	5	0	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0604	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0604	TRUE	6	15	3	35	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SOCS1--CDC42EP2	4	3	SOCS1	2410	chr16:11348627:-	CDC42EP2	8342	chr11:65088015:+	INCL_NON_REF_SPLICE	YES	244	1	0.03	0.88	0.0483	0.0363	SOCS1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:11348262-11350036:-,suppressor_of_cytokine_signaling_1,CDC42EP2->CDC42_effector_protein_2,chr11:65082289-65089900:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.88	0.0846	TRUE	0	0	0	1	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	2	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0.0242	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0725	FALSE	462	80	0	856	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	3	6	RP11-155G15.2	3309	chr5:96772337:+	RP11-1E3.1	9053	chr5:97004255:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0.0725	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1088	FALSE	0	1	0	8	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBC1D23--TDRD12	4	2	TBC1D23	1072	chr3:99979915:+	TDRD12	54192	chr19:33311939:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0483	0.0242	TBC1D23->TBC1_domain_family_member_23,chr3:99979844-100044095:+,TDRD12->chr19:33210659-33320483:+,tudor_domain_containing_12	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0725	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AKAP13--FAM174B	4	1	AKAP13	53807	chr15:86283503:+	FAM174B	68495	chr15:93325371:-	ONLY_REF_SPLICE	YES	95	0	0.05	1	0.0483	0.0121	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,FAM174B->chr15:93160673-93353114:-,family_with_sequence_similarity_174_member_B	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0604	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0483	0.0121	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.0604	FALSE	16	356	14	466	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-266K4.9--FAM66C	4	1	RP11-266K4.9	1585	chr12:8388595:+	FAM66C	19040	chr12:8368402:+	ONLY_REF_SPLICE	YES	29	0	0.15	1	0.0483	0.0121	GTEx_FI:{Brain=[count:45=pct:6.8],Esophagus=[count:2=pct:0.5],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Colon=[count:2=pct:1.0],Uterus=[count:1=pct:2.3],Pituitary=[count:1=pct:1.9],Testis=[count:1=pct:1.0]},LOCAL_REARRANGEMENT:+:[19264],RP11-266K4.9->chr12:8388011-8395160:+,FAM66C->chr12:8332805-8368747:+,family_with_sequence_similarity_66_member_C	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.0604	TRUE	33	15	0	5	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	55	18	0.11	0.28	0.0363	0.0483	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.28	0.0846	TRUE	267	562	48	632	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LAG3--MT-CO1	4	0	LAG3	1234	chr12:6881911:+	MT-CO1	9731	chrM:6220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	LAG3->chr12:6881678-6887621:+,lymphocyte_activating_3,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0483	FALSE	0	0	0	1	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	4	0	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0483	FALSE	101	855	57	72	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	4	0	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0483	FALSE	101	855	57	72	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0483	FALSE	499	1288	110	792	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0483	FALSE	499	1288	110	792	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	3	2	LINC00299	13051	chr2:8383695:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	4	1	0.56	0.0363	0.0242	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.0605	TRUE	2	12	0	3	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	3	2	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0.0242	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0605	FALSE	0	24	0	62	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	3	1	MT-ND5	2281	chrM:13617:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	3216	0	0	1	0.0363	0.0121	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0484	FALSE	26	125	4	93	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2K--RUNX2	3	1	UBE2K	1347	chr4:39700010:+	RUNX2	32751	chr6:45630852:+	ONLY_REF_SPLICE	YES	14	1	0.22	0.8	0.0363	0.0121	UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K,RUNX2->Oncogene{Bushman},chr6:45295894-45632086:+,runt_related_transcription_factor_2	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.8	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC007464.1--LINC00299	3	0	AC007464.1	1346	chr2:8417869:-	LINC00299	22585	chr2:8383771:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0	AC007464.1->chr2:8062556-8418214:-,LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	0	21	0	1	21	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--DVL1	3	0	MT-ND5	1643	chrM:12979:+	DVL1	9547	chr1:1275696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,DVL1->chr1:1270656-1284730:-,dishevelled_segment_polarity_protein_1	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	FALSE	0	0	0	1	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	3	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	FALSE	369	2501	205	193	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	3	0	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	8873	chr5:97235342:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	0	1	0	5	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	2	3	CTD-2337A12.1	4828	chr5:95715356:+	CAST	23932	chr5:96058343:+	ONLY_REF_SPLICE	YES	0	230	1	0.02	0.0242	0.0363	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0605	TRUE	2	9	1	4	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	6	KANSL1	9741	chr17:44171926:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	59	14	0.11	0.33	0.0121	0.0725	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.33	0.0846	TRUE	51	25	1	17	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23A--RAB34	1	6	RPL23A	2498	chr17:27047908:+	RAB34	11035	chr17:27042919:-	ONLY_REF_SPLICE	NO	3198	1	0	0.88	0.0121	0.0725	LOCAL_INVERSION:+:-:[964],RPL23A->chr17:27046411-27051377:+,ribosomal_protein_L23a,RAB34->RAB34,_member_RAS_oncogene_family,chr17:27041299-27045447:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.88	0.0846	FALSE	0	0	0	1	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AKAP13--FAM174B	2	1	AKAP13	55030	chr15:86284726:+	FAM174B	69582	chr15:93242393:-	ONLY_REF_SPLICE	YES	75	0	0.04	1	0.0242	0.0121	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,FAM174B->chr15:93160673-93353114:-,family_with_sequence_similarity_174_member_B	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00158--AP000233.4	2	1	LINC00158	5017	chr21:26793020:-	AP000233.4	12117	chr21:26547759:-	ONLY_REF_SPLICE	YES	22	0	0.12	1	0.0242	0.0121	NEIGHBORS[51994],LINC00158->chr21:26758133-26804013:-,long_intergenic_non-protein_coding_RNA_158,AP000233.4->chr21:26541745-26706139:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.0363	FALSE	0	1	0	4	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	2	1	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0.0121	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	FALSE	0	26	0	50	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC007464.1--LINC00299	2	0	AC007464.1	1346	chr2:8417869:-	LINC00299	26678	chr2:8200535:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	AC007464.1->chr2:8062556-8418214:-,LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	1	35	0	1	35	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--C9orf3	2	0	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	53	99	2	44	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--CLPTM1L	2	0	CPSF6	11046	chr12:69656342:+	CLPTM1L	37105	chr5:1318568:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2336H13.2--MON1B	2	0	CTD-2336H13.2	1138	chr16:76770376:+	MON1B	7108	chr16:77225373:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	CTD-2336H13.2->chr16:76770239-76962066:+,MON1B->MON1_homolog_B,_secretory_trafficking_associated,chr16:77224732-77236302:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	5	0	2	5	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED11--POLR2J2	2	0	MED11	1147	chr17:4634869:+	POLR2J2	9465	chr7:102306610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	MED11->chr17:4634723-4636905:+,mediator_complex_subunit_11,POLR2J2->chr7:102277474-102312076:-,chr7:102277496-102312088:-,polymerase_(RNA)_II_subunit_J2	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NQO2--MKI67	2	0	NQO2	9651	chr6:3006793:+	MKI67	21923	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	2	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--CBX5	2	0	RCC1	2175	chr1:28834672:+	CBX5	21873	chr12:54651476:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CBX5->chr12:54624724-54673886:-,chromobox_5	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	7	2	11	5	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	1	3	TIMM23	5841	chr10:51610393:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	198	6	0.02	0.4	0.0121	0.0363	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.4	0.0484	TRUE	1	12	0	11	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AKAP13--FAM174B	1	2	AKAP13	55030	chr15:86284726:+	FAM174B	68495	chr15:93325371:-	ONLY_REF_SPLICE	YES	75	0	0.04	1	0.0121	0.0242	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,FAM174B->chr15:93160673-93353114:-,family_with_sequence_similarity_174_member_B	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AKAP13--FAM174B	1	2	AKAP13	60348	chr15:86291040:+	FAM174B	68495	chr15:93325371:-	ONLY_REF_SPLICE	YES	53	0	0.05	1	0.0121	0.0242	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,FAM174B->chr15:93160673-93353114:-,family_with_sequence_similarity_174_member_B	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0121	0.0242	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0363	FALSE	407	2205	196	549	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0121	0.0242	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	FALSE	467	2173	244	435	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0121	0.0242	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0363	FALSE	515	4851	409	746	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AKAP13--RP11-386M24.8	1	1	AKAP13	55030	chr15:86284726:+	RP11-386M24.8	66011	chr15:93242393:-	ONLY_REF_SPLICE	YES	75	0	0.03	1	0.0121	0.0121	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,RP11-386M24.8->chr15:93242270-93267507:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD74--RBM22	1	1	CD74	3371	chr5:149785822:-	RBM22	12485	chr5:150078833:-	ONLY_REF_SPLICE	YES	13238	131	0	0.02	0.0121	0.0121	CD74->CD74_molecule,Oncogene{Bushman},chr5:149781200-149792492:-,RBM22->RNA_binding_motif_protein_22,chr5:150070356-150080669:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COL22A1--FAM135B	1	1	COL22A1	69035	chr8:139603667:-	FAM135B	86317	chr8:139380245:-	ONLY_REF_SPLICE	YES	37	0	0.05	1	0.0121	0.0121	NEIGHBORS[91413],COL22A1->chr8:139600478-139926249:-,collagen_type_XXII_alpha_1,FAM135B->chr8:139142266-139509065:-,family_with_sequence_similarity_135_member_B	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0242	FALSE	1	5	0	1	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITPR2--STK38L	1	1	ITPR2	40219	chr12:26703180:-	STK38L	72278	chr12:27450643:+	ONLY_REF_SPLICE	YES	15	15	0.12	0.12	0.0121	0.0121	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.12	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	1	1	LINC00299	17125	chr2:8200478:-	AC007464.1	27081	chr2:8108410:-	ONLY_REF_SPLICE	YES	0	8	1	0.2	0.0121	0.0121	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.0242	TRUE	1	0	0	2	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	1	1	LINC00299	11974	chr2:8427468:-	AC007464.1	27081	chr2:8108410:-	ONLY_REF_SPLICE	YES	0	8	1	0.2	0.0121	0.0121	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.0242	TRUE	2	0	0	3	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MARCH6--CCT5	1	1	MARCH6	10353	chr5:10394897:+	CCT5	41550	chr5:10254257:+	ONLY_REF_SPLICE	NO	234	1013	0.01	0	0.0121	0.0121	GTEx_v2:{count=1;pct=0.01%;dist=Kidney_-_Cortex=1},LOCAL_REARRANGEMENT:+:[87291],MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6,CCT5->chaperonin_containing_TCP1_subunit_5,chr5:10250033-10266524:+	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0242	FALSE	0	0	0	3	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MCC--PTMS	1	1	MCC	13619	chr5:112458381:-	PTMS	58509	chr12:6878769:+	ONLY_REF_SPLICE	NO	11	155	0.15	0.01	0.0121	0.0121	MCC->Oncogene{Bushman},chr5:112357796-112824527:-,mutated_in_colorectal_cancers,PTMS->chr12:6874682-6880116:+,parathymosin	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.15	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000267
HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23A--RAB34	1	1	RPL23A	2498	chr17:27047908:+	RAB34	11231	chr17:27042723:-	ONLY_REF_SPLICE	YES	3198	16	0	0.11	0.0121	0.0121	LOCAL_INVERSION:+:-:[964],RPL23A->chr17:27046411-27051377:+,ribosomal_protein_L23a,RAB34->RAB34,_member_RAS_oncogene_family,chr17:27041299-27045447:-	HDLM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.11	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000267
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--PARGP1	4	0	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0861	0	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0861	TRUE	393	2105	140	19	0	FALSE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC005944.2--SOD1	3	0	AC005944.2	1410	chr19:3053317:+	SOD1	7969	chr21:33036143:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	AC005944.2->chr19:3052908-3053722:+,SOD1->chr21:33031935-33041244:+,superoxide_dismutase_1,_soluble	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2L1--RNF114	3	0	BCL2L1	3335	chr20:30309458:-	RNF114	11264	chr20:48561919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0646	0	BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-,RNF114->chr20:48552948-48570429:+,ring_finger_protein_114	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD53--MFN1	3	0	CD53	4334	chr1:111435155:+	MFN1	28476	chr3:179104221:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0646	0	CD53->CD53_molecule,Oncogene{Bushman},chr1:111415775-111442550:+,MFN1->chr3:179065480-179112719:+,mitofusin_1	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CES3--CASC5	3	0	CES3	1153	chr16:66995292:+	CASC5	41204	chr15:40947107:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0646	0	CES3->carboxylesterase_3,chr16:66995140-67009051:+,CASC5->Oncogene{Bushman},cancer_susceptibility_candidate_5,chr15:40886218-40956540:+	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTB-55O6.12--ROCK1	3	0	CTB-55O6.12	4787	chr19:14280680:+	ROCK1	28427	chr18:18567000:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	CTB-55O6.12->chr19:14247991-14282079:+,ROCK1->Rho_associated_coiled-coil_containing_protein_kinase_1,chr18:18526867-18691812:-	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ETS1--FEV	3	0	ETS1	15994	chr11:128333457:-	FEV	26222	chr2:219846979:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},ETS1->ETS_proto-oncogene_1,_transcription_factor,Oncogene{Bushman},chr11:128328656-128457453:-,FEV->FEV,_ETS_transcription_factor,Oncogene{Bushman},chr2:219845809-219850379:-	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FDFT1--TLR9	3	0	FDFT1	12972	chr8:11696002:+	TLR9	16846	chr3:52273126:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1,TLR9->chr3:52255096-52273183:-,chr3:52255097-52265206:-,toll_like_receptor_9	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNPTAB--PCED1B	3	0	GNPTAB	6637	chr12:102179790:-	PCED1B	35267	chr12:47628790:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0646	0	GNPTAB->N-acetylglucosamine-1-phosphate_transferase_alpha_and_beta_subunits,chr12:102139275-102224716:-,PCED1B->PC-esterase_domain_containing_1B,chr12:47473386-47630443:+	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KRT222--CHD7	3	0	KRT222	13393	chr17:38787075:-	CHD7	27349	chr8:61720794:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	KRT222->chr17:38785049-38821393:-,chr17:38810917-38821433:-,keratin_222,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL3--PREX1	3	0	RPL3	5795	chr22:39711450:-	PREX1	45699	chr20:47248867:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SART1--SRSF5	3	0	SART1	7286	chr11:65743930:+	SRSF5	17667	chr14:70235550:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	SART1->chr11:65729160-65747299:+,squamous_cell_carcinoma_antigen_recognized_by_T-cells_1,SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SFPQ--CCDC41	3	0	SFPQ	1361	chr1:35658389:-	CCDC41	19040	chr12:94853649:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,CCDC41->chr12:94700225-94853764:-	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0646	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC002116.7--SET	2	0	AC002116.7	3379	chr19:36510286:+	SET	12303	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	AC002116.7->chr19:36505410-36536874:+,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKHD1--ZNF431	2	0	ANKHD1	25436	chr5:139889766:+	ZNF431	56565	chr19:21372668:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATF6B--RP11-445H22.3	2	0	ATF6B	4790	chr6:32088548:-	RP11-445H22.3	19168	chr20:43285692:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	ATF6B->activating_transcription_factor_6_beta,chr6:32065953-32096030:-,RP11-445H22.3->chr20:43285092-43324737:-	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FLI1--OBSCN	2	0	FLI1	11065	chr11:128651918:+	OBSCN	26018	chr1:228401142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+,OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPC--CD38	2	0	HNRNPC	11906	chr14:21698478:-	CD38	21564	chr4:15818134:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2),CD38->CD38_molecule,chr4:15779898-15854853:+	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAPK9--CARD8	2	0	MAPK9	18447	chr5:179665332:-	CARD8	42397	chr19:48715232:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	MAPK9->Oncogene{Bushman},chr5:179660143-179719099:-,mitogen-activated_protein_kinase_9,CARD8->Oncogene{Bushman},caspase_recruitment_domain_family_member_8,chr19:48684027-48759203:-	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED15--PI4KA	2	0	MED15	16866	chr22:20922918:+	PI4KA	49400	chr22:21119981:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	{Klijn_CCL:Ovary=1},MED15->chr22:20850200-20941919:+,mediator_complex_subunit_15,PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED31--BRD2	2	0	MED31	2279	chr17:6553676:-	BRD2	13562	chr6:32942239:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	MED31->chr17:6546635-6554954:-,mediator_complex_subunit_31,BRD2->Oncogene{Bushman},bromodomain_containing_2,chr6:32936437-32949282:+	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOS3--EVL	2	0	NOS3	16558	chr7:150708074:+	EVL	49587	chr14:100607517:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	NOS3->chr7:150688083-150711676:+,nitric_oxide_synthase_3,EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE3B--COPB1	2	0	PDE3B	2331	chr11:14666599:+	COPB1	33425	chr11:14515985:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},PDE3B->chr11:14665269-14892350:+,phosphodiesterase_3B,COPB1->chr11:14464986-14521573:-,coatomer_protein_complex_subunit_beta_1	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PEX3--POC1B	2	0	PEX3	8006	chr6:143795993:+	POC1B	18384	chr12:89885892:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	PEX3->chr6:143771944-143811147:+,peroxisomal_biogenesis_factor_3,POC1B->POC1_centriolar_protein_B,chr12:89813495-89919801:-	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMD13--ALG6	2	0	PSMD13	2678	chr11:239076:+	ALG6	21857	chr1:63877597:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	PSMD13->chr11:236546-252983:+,proteasome_26S_subunit,_non-ATPase_13,ALG6->ALG6,_alpha-1,3-glucosyltransferase,chr1:63833261-63904233:+	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RGPD3--WIPI2	2	0	RGPD3	19254	chr2:107039499:-	WIPI2	37793	chr7:5265454:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	RGPD3->RANBP2-like_and_GRIP_domain_containing_3,chr2:107021446-107084832:-,WIPI2->WD_repeat_domain,_phosphoinositide_interacting_2,chr7:5229819-5273457:+	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-156P1.3--NHP2L1	2	0	RP11-156P1.3	1489	chr17:45177201:-	NHP2L1	27692	chr22:42076368:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	RP11-156P1.3->chr17:45061411-45177689:-,NHP2L1->chr22:42069934-42086508:-	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SH3GL1--UHRF1	2	0	SH3GL1	1224	chr19:4400321:-	UHRF1	18771	chr19:4910888:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	SH3GL1->Oncogene{Bushman},SH3_domain_containing_GRB2_like_1,chr19:4360367-4400544:-,UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZBTB20--TBC1D5	2	0	ZBTB20	6598	chr3:114693213:-	TBC1D5	80366	chr3:17349626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	DND41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	TRUE	ACH-000981
MDAMB468_BREAST	UBR5--SLC25A32	141	6	UBR5	1669	chr8:103424401:-	SLC25A32	58533	chr8:104420012:-	ONLY_REF_SPLICE	YES	4	67	0.97	0.69	2.6367	0.1122	{Klijn_CCL:Breast=1},UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32	MDAMB468_BREAST	0.69	0.97	2.7489	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	DCAF8--COPA	121	48	DCAF8	8000	chr1:160231907:-	COPA	53444	chr1:160260476:-	ONLY_REF_SPLICE	YES	47	234	0.78	0.42	2.2627	0.8976	HGNC_GENEFAM,LOCAL_INVERSION:-,chr1:-:[4143],DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-,COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha	MDAMB468_BREAST	0.42	0.78	3.1603	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	DCAF8--COPA	65	3	DCAF8	7668	chr1:160232239:-	COPA	53444	chr1:160260476:-	ONLY_REF_SPLICE	YES	7	234	0.91	0.23	1.2155	0.0561	HGNC_GENEFAM,LOCAL_INVERSION:-,chr1:-:[4143],DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-,COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha	MDAMB468_BREAST	0.23	0.91	1.2716	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	ARID1A--MAST2	56	11	ARID1A	2508	chr1:27024031:+	MAST2	29070	chr1:46290105:+	ONLY_REF_SPLICE	YES	13	46	0.84	0.59	1.0472	0.2057	Cosmic{samples=153,mutations=1,papers=1},{Klijn_CCL:Breast=1},ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,MAST2->chr1:46252659-46501796:+,microtubule_associated_serine/threonine_kinase_2	MDAMB468_BREAST	0.59	0.84	1.2529	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	TIMM23B--LINC00843	55	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0285	0.2431	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MDAMB468_BREAST	1	1	1.2716	TRUE	508	994	45	981	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-TA--MT-TN	56	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0472	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB468_BREAST	1	1	1.0472	FALSE	369	2501	205	193	0	FALSE	ACH-000849
MDAMB468_BREAST	HP1BP3--ZNF362	49	12	HP1BP3	1129	chr1:21113688:-	ZNF362	25399	chr1:33741701:+	ONLY_REF_SPLICE	YES	29	5	0.68	0.92	0.9163	0.2244	HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,ZNF362->chr1:33722146-33766320:+,zinc_finger_protein_362	MDAMB468_BREAST	0.68	0.92	1.1407	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	OR51S1--TP53I11	51	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9537	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	MDAMB468_BREAST	1	1	0.9537	TRUE	402	216	10	229	0	FALSE	ACH-000849
MDAMB468_BREAST	TIMM23--RP11-464F9.1	33	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	231	3	0.13	0.92	0.6171	0.0187	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MDAMB468_BREAST	0.13	0.92	0.6358	TRUE	519	3926	326	965	0	FALSE	ACH-000849
MDAMB468_BREAST	RNF24--RP11-352D3.2	30	9	RNF24	1146	chr20:3996084:-	RP11-352D3.2	18927	chr20:4053311:-	ONLY_REF_SPLICE	YES	8	0	0.83	1	0.561	0.1683	LOCAL_REARRANGEMENT:-:[54570],RNF24->chr20:3907956-3996229:-,ring_finger_protein_24,RP11-352D3.2->chr20:4050799-4055812:-	MDAMB468_BREAST	0.83	1	0.7293	TRUE	0	1	0	1	1	TRUE	ACH-000849
MDAMB468_BREAST	MT-ND4--SLC44A2	29	1	MT-ND4	1471	chrM:11230:+	SLC44A2	13480	chr19:10747001:+	INCL_NON_REF_SPLICE	YES	15269	2180	0	0.01	0.5423	0.0187	MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2	MDAMB468_BREAST	0	0.01	0.561	FALSE	0	0	0	1	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-TA--MT-TC	28	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5236	0.0561	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB468_BREAST	1	1	0.5797	FALSE	462	80	0	856	0	FALSE	ACH-000849
MDAMB468_BREAST	MIR663A--TLE3	23	18	MIR663A	2808	chr20:26189937:-	TLE3	28661	chr15:70350636:-	INCL_NON_REF_SPLICE	YES	71	25	0.37	0.62	0.4301	0.3366	MIR663A->chr20:26167556-26232162:-,microRNA_663a,TLE3->chr15:70340129-70390515:-,transducin_like_enhancer_of_split_3	MDAMB468_BREAST	0.37	0.62	0.7667	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	MT-TA--MT-TN	10	42	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.187	0.7854	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB468_BREAST	1	1	0.9724	FALSE	369	2501	205	193	0	FALSE	ACH-000849
MDAMB468_BREAST	AL589743.1--RP11-536C10.17	18	0	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3366	0	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	MDAMB468_BREAST	1	1	0.3366	TRUE	0	33	0	45	33	FALSE	ACH-000849
MDAMB468_BREAST	AP000525.9--LA16c-60G3.6	18	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3366	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	MDAMB468_BREAST	1	1	0.3366	TRUE	0	42	0	133	42	FALSE	ACH-000849
MDAMB468_BREAST	MT-ND6--MT-TE	13	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.2431	0.2805	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB468_BREAST	0.93	1	0.5236	FALSE	499	1288	110	792	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-TA--MT-TN	9	26	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1683	0.4862	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB468_BREAST	1	1	0.6545	FALSE	369	2501	205	193	0	FALSE	ACH-000849
MDAMB468_BREAST	NRIP1--AF127936.7	14	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.65	1	0.2618	0.0561	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB468_BREAST	0.65	1	0.3179	FALSE	292	1546	117	613	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-ND6--MT-TE	13	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.2431	0.0374	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB468_BREAST	0.94	1	0.2805	FALSE	499	1288	110	792	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-TA--MT-TN	5	32	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0935	0.5984	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB468_BREAST	1	1	0.6919	FALSE	369	2501	205	193	0	FALSE	ACH-000849
MDAMB468_BREAST	RP11-123O10.4--GRIP1	13	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2431	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MDAMB468_BREAST	1	1	0.2431	FALSE	416	2512	207	587	0	FALSE	ACH-000849
MDAMB468_BREAST	ARID1A--MAST2	12	1	ARID1A	1068	chr1:27022591:+	MAST2	29070	chr1:46290105:+	INCL_NON_REF_SPLICE	YES	1	46	0.93	0.22	0.2244	0.0187	Cosmic{samples=153,mutations=1,papers=1},{Klijn_CCL:Breast=1},ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,MAST2->chr1:46252659-46501796:+,microtubule_associated_serine/threonine_kinase_2	MDAMB468_BREAST	0.22	0.93	0.2431	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	CTD-2337A12.1--CAST	11	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	161	1	0.07	0.2057	0.0374	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	MDAMB468_BREAST	0.07	1	0.2431	TRUE	347	1186	183	220	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-ND6--MT-TE	11	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.2057	0.0374	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB468_BREAST	0.93	1	0.2431	FALSE	499	1288	110	792	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-TA--MT-TN	7	18	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1309	0.3366	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB468_BREAST	1	1	0.4675	FALSE	369	2501	205	193	0	FALSE	ACH-000849
MDAMB468_BREAST	STK3--GRHL2	9	6	STK3	18604	chr8:99718695:-	GRHL2	40346	chr8:102555469:+	ONLY_REF_SPLICE	YES	43	40	0.26	0.27	0.1683	0.1122	STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,GRHL2->chr8:102504660-102681954:+,grainyhead_like_transcription_factor_2	MDAMB468_BREAST	0.26	0.27	0.2805	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	BAIAP2--AZI1	9	5	BAIAP2	27835	chr17:79090112:+	AZI1	37436	chr17:79177407:-	INCL_NON_REF_SPLICE	YES	3	34	0.82	0.29	0.1683	0.0935	LOCAL_INVERSION:+:-:[72161],BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+,AZI1->chr17:79163393-79196799:-	MDAMB468_BREAST	0.29	0.82	0.2618	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	RP11-96H19.1--RP11-446N19.1	10	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.187	0.0187	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB468_BREAST	0.92	1	0.2057	FALSE	515	4851	409	746	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-TA--MT-TN	10	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.187	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB468_BREAST	1	1	0.187	FALSE	369	2501	205	193	0	FALSE	ACH-000849
MDAMB468_BREAST	DCAF8--COPA	5	16	DCAF8	7841	chr1:160232066:-	COPA	53444	chr1:160260476:-	ONLY_REF_SPLICE	YES	79	234	0.21	0.08	0.0935	0.2992	HGNC_GENEFAM,LOCAL_INVERSION:-,chr1:-:[4143],DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-,COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha	MDAMB468_BREAST	0.08	0.21	0.3927	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	MT-ND4--MT-ATP8	9	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1683	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB468_BREAST	1	1	0.1683	FALSE	230	193	14	283	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-ATP6--MT-CO1	8	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1496	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB468_BREAST	1	1	0.1496	FALSE	183	104	9	328	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-ND4--MT-ATP8	8	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1496	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB468_BREAST	1	1	0.1496	FALSE	231	205	14	283	0	FALSE	ACH-000849
MDAMB468_BREAST	RP11-494M8.4--OVCH2	7	4	RP11-494M8.4	10901	chr11:7775931:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1309	0.0748	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	MDAMB468_BREAST	1	1	0.2057	FALSE	16	1	1	11	0	FALSE	ACH-000849
MDAMB468_BREAST	RP11-494M8.4--OVCH2	7	3	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.1309	0.0561	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	MDAMB468_BREAST	0.77	1	0.187	FALSE	32	0	0	22	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-ND6--MT-TE	4	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0748	0.2618	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB468_BREAST	0.95	1	0.3366	FALSE	499	1288	110	792	0	FALSE	ACH-000849
MDAMB468_BREAST	RDH13--FBXO3	7	1	RDH13	2700	chr19:55580690:-	FBXO3	27190	chr11:33792376:-	ONLY_REF_SPLICE	YES	6	80	0.57	0.09	0.1309	0.0187	RDH13->chr19:55550476-55582659:-,retinol_dehydrogenase_13_(all-trans/9-cis),FBXO3->F-box_protein_3,chr11:33762485-33796089:-	MDAMB468_BREAST	0.09	0.57	0.1496	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	MT-TA--MT-TN	4	12	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0748	0.2244	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB468_BREAST	1	1	0.2992	FALSE	369	2501	205	193	0	FALSE	ACH-000849
MDAMB468_BREAST	FTH1--ACTB	6	0	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1122	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MDAMB468_BREAST	1	1	0.1122	TRUE	1	0	0	97	0	FALSE	ACH-000849
MDAMB468_BREAST	HP1BP3--ZNF362	3	12	HP1BP3	1129	chr1:21113688:-	ZNF362	23387	chr1:33736088:+	ONLY_REF_SPLICE	YES	29	2	0.34	0.88	0.0561	0.2244	HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,ZNF362->chr1:33722146-33766320:+,zinc_finger_protein_362	MDAMB468_BREAST	0.34	0.88	0.2805	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	MT-TA--MT-TN	6	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1122	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB468_BREAST	1	1	0.1122	FALSE	369	2501	205	193	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-TA--MT-TN	6	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1122	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB468_BREAST	1	1	0.1122	FALSE	369	2501	205	193	0	FALSE	ACH-000849
MDAMB468_BREAST	RP11-120D5.1--MID1	5	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	30	1	0.21	0.0935	0.0561	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MDAMB468_BREAST	0.21	1	0.1496	FALSE	16	356	14	466	0	FALSE	ACH-000849
MDAMB468_BREAST	RP11-680G10.1--GSE1	5	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	45	1	0.13	0.0935	0.0374	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MDAMB468_BREAST	0.13	1	0.1309	TRUE	465	1949	224	605	0	FALSE	ACH-000849
MDAMB468_BREAST	HP1BP3--ZNF362	2	13	HP1BP3	3868	chr1:21106305:-	ZNF362	25399	chr1:33741701:+	ONLY_REF_SPLICE	YES	207	5	0.07	0.75	0.0374	0.2431	HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,ZNF362->chr1:33722146-33766320:+,zinc_finger_protein_362	MDAMB468_BREAST	0.07	0.75	0.2805	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	MT-ND4--MT-ATP8	5	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	15056	0	0	1	0.0935	0.0187	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB468_BREAST	0	1	0.1122	FALSE	231	205	14	283	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-ND4--MT-ATP8	5	1	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	13995	766	0	0.01	0.0935	0.0187	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB468_BREAST	0	0.01	0.1122	FALSE	231	217	16	283	0	FALSE	ACH-000849
MDAMB468_BREAST	FTH1--ACTB	5	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0935	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MDAMB468_BREAST	1	1	0.0935	TRUE	1	0	0	97	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0935	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB468_BREAST	1	1	0.0935	FALSE	230	198	14	283	0	FALSE	ACH-000849
MDAMB468_BREAST	RP11-494M8.4--OVCH2	4	2	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0748	0.0374	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	MDAMB468_BREAST	0.55	1	0.1122	FALSE	60	13	8	23	0	FALSE	ACH-000849
MDAMB468_BREAST	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.38	0.0748	0.0374	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MDAMB468_BREAST	0.38	1	0.1122	TRUE	458	1351	185	561	0	FALSE	ACH-000849
MDAMB468_BREAST	DPH6-AS1--RP11-684B21.1	4	1	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0748	0.0187	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	MDAMB468_BREAST	0.71	1	0.0935	TRUE	17	119	17	33	0	FALSE	ACH-000849
MDAMB468_BREAST	ELAC1--RP11-267C16.1	4	1	ELAC1	3437	chr18:48500931:+	RP11-267C16.1	11814	chr18:48899108:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0748	0.0187	ELAC1->chr18:48494361-48514491:+,elaC_ribonuclease_Z_1,RP11-267C16.1->chr18:48872619-49088939:+	MDAMB468_BREAST	1	1	0.0935	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	HP1BP3--ZNF362	1	13	HP1BP3	1675	chr1:21113142:-	ZNF362	25399	chr1:33741701:+	ONLY_REF_SPLICE	NO	70	5	0.17	0.74	0.0187	0.2431	HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,ZNF362->chr1:33722146-33766320:+,zinc_finger_protein_362	MDAMB468_BREAST	0.17	0.74	0.2618	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	SLC1A5--MT-ND4L	4	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	431	0	0.01	1	0.0748	0.0187	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB468_BREAST	0.01	1	0.0935	FALSE	0	0	0	189	0	FALSE	ACH-000849
MDAMB468_BREAST	CTD-2314B22.3--RP11-536C10.20	4	0	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.20	26286	chr14:20151826:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0748	0	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.20->chr14:20132257-20151836:-	MDAMB468_BREAST	1	1	0.0748	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0748	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB468_BREAST	1	1	0.0748	FALSE	231	217	16	283	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0748	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB468_BREAST	1	1	0.0748	FALSE	499	1288	110	792	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0748	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB468_BREAST	1	1	0.0748	FALSE	462	80	0	856	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-TA--MT-TN	4	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0748	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB468_BREAST	1	1	0.0748	FALSE	369	2501	205	193	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-ATP6--MT-CO1	3	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2807	20975	0	0	0.0561	0.0561	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB468_BREAST	0	0	0.1122	FALSE	183	104	9	328	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-ATP6--MT-CO1	3	3	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	NO	4973	18694	0	0	0.0561	0.0561	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB468_BREAST	0	0	0.1122	FALSE	183	104	9	328	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-TA--MT-TC	3	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0561	0.0561	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB468_BREAST	1	1	0.1122	FALSE	462	80	0	856	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0561	0.0561	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB468_BREAST	1	1	0.1122	FALSE	462	80	0	856	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0561	0.0561	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB468_BREAST	1	1	0.1122	FALSE	462	80	0	856	0	FALSE	ACH-000849
MDAMB468_BREAST	UBR5--SLC25A32	3	3	UBR5	1669	chr8:103424401:-	SLC25A32	59684	chr8:104417089:-	ONLY_REF_SPLICE	YES	4	74	0.6	0.07	0.0561	0.0561	{Klijn_CCL:Breast=1},UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32	MDAMB468_BREAST	0.07	0.6	0.1122	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	UNC13B--ENHO	3	3	UNC13B	12702	chr9:35313986:+	ENHO	39847	chr9:34521854:-	ONLY_REF_SPLICE	YES	31	0	0.16	1	0.0561	0.0561	{Klijn_CCL:Breast=1},UNC13B->chr9:35161999-35405335:+,unc-13_homolog_B_(C._elegans),ENHO->chr9:34521038-34523039:-,energy_homeostasis_associated	MDAMB468_BREAST	0.16	1	0.1122	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	CRLS1--TRAPPC6A	3	2	CRLS1	10638	chr20:6012726:+	TRAPPC6A	19856	chr19:45668452:-	ONLY_REF_SPLICE	YES	50	39	0.09	0.11	0.0561	0.0374	{Klijn_CCL:Breast=1},CRLS1->cardiolipin_synthase_1,chr20:5986736-6020699:+,TRAPPC6A->chr19:45666186-45681495:-,trafficking_protein_particle_complex_6A	MDAMB468_BREAST	0.09	0.11	0.0935	TRUE	0	0	0	1	0	FALSE	ACH-000849
MDAMB468_BREAST	AL136376.1--RPS28	3	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0561	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MDAMB468_BREAST	1	1	0.0561	TRUE	0	0	0	12	0	TRUE	ACH-000849
MDAMB468_BREAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0561	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB468_BREAST	1	1	0.0561	FALSE	183	104	9	328	0	FALSE	ACH-000849
MDAMB468_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0561	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB468_BREAST	1	1	0.0561	FALSE	499	1288	110	792	0	FALSE	ACH-000849
MDAMB468_BREAST	NRIP1--AF127936.7	2	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	23	0	0.21	1	0.0374	0.0748	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB468_BREAST	0.21	1	0.1122	FALSE	125	705	46	456	0	FALSE	ACH-000849
MDAMB468_BREAST	GALNT11--ITCH	2	3	GALNT11	6907	chr7:151791607:+	ITCH	26037	chr20:32957200:+	ONLY_REF_SPLICE	YES	27	1	0.16	0.83	0.0374	0.0561	GALNT11->chr7:151722759-151819425:+,polypeptide_N-acetylgalactosaminyltransferase_11,ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase	MDAMB468_BREAST	0.16	0.83	0.0935	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	RP11-120D5.1--MID1	2	3	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	30	1	0.14	0.0374	0.0561	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MDAMB468_BREAST	0.14	1	0.0935	FALSE	2	31	0	60	0	FALSE	ACH-000849
MDAMB468_BREAST	CD44--PDHX	2	2	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	1436	177	0	0.02	0.0374	0.0374	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	MDAMB468_BREAST	0	0.02	0.0748	FALSE	0	20	0	35	2	FALSE	ACH-000849
MDAMB468_BREAST	RNF152--RP11-879F14.1	2	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0374	0.0187	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	MDAMB468_BREAST	0.5	1	0.0561	FALSE	119	124	24	18	0	FALSE	ACH-000849
MDAMB468_BREAST	UBR5--RP11-318M2.2	2	1	UBR5	1669	chr8:103424401:-	RP11-318M2.2	58556	chr8:104298130:-	ONLY_REF_SPLICE	YES	4	3	0.43	0.5	0.0374	0.0187	UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,RP11-318M2.2->chr8:104169218-104311000:-	MDAMB468_BREAST	0.43	0.5	0.0561	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	ATR--U2SURP	2	0	ATR	3414	chr3:142284963:-	U2SURP	75627	chr3:142751626:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Vagina=1},ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	MDAMB468_BREAST	1	1	0.0374	TRUE	0	10	0	10	7	TRUE	ACH-000849
MDAMB468_BREAST	ITGA9--CTDSPL	2	0	ITGA9	20510	chr3:37725506:+	CTDSPL	46772	chr3:38006062:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	{Klijn_CCL:Breast=1},NEIGHBORS[38446],ITGA9->Oncogene{Bushman},chr3:37493606-37865005:+,integrin_subunit_alpha_9,CTDSPL->CTD_small_phosphatase_like,chr3:37903451-38025960:+	MDAMB468_BREAST	1	1	0.0374	FALSE	0	0	0	1	0	FALSE	ACH-000849
MDAMB468_BREAST	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	16625	chr12:66911756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MDAMB468_BREAST	1	1	0.0374	FALSE	0	1	1	3	0	FALSE	ACH-000849
MDAMB468_BREAST	UBR5--RP11-318M2.2	2	0	UBR5	1669	chr8:103424401:-	RP11-318M2.2	63372	chr8:104258912:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,RP11-318M2.2->chr8:104169218-104311000:-	MDAMB468_BREAST	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	ZNF750--TBCD	2	0	ZNF750	1652	chr17:80797803:-	TBCD	22208	chr17:80772716:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	NEIGHBORS_OVERLAP:-:+:[11143],ZNF750->chr17:80787311-80798454:-,zinc_finger_protein_750,TBCD->chr17:80709940-80900724:+,tubulin_folding_cofactor_D	MDAMB468_BREAST	1	1	0.0374	FALSE	0	0	0	1	0	FALSE	ACH-000849
MDAMB468_BREAST	RNF24--RP11-352D3.2	1	2	RNF24	1146	chr20:3996084:-	RP11-352D3.2	20071	chr20:4050921:-	ONLY_REF_SPLICE	NO	8	6	0.27	0.33	0.0187	0.0374	LOCAL_REARRANGEMENT:-:[54570],RNF24->chr20:3907956-3996229:-,ring_finger_protein_24,RP11-352D3.2->chr20:4050799-4055812:-	MDAMB468_BREAST	0.27	0.33	0.0561	TRUE	0	0	0	1	0	TRUE	ACH-000849
MDAMB468_BREAST	CRLS1--TRAPPC6A	1	1	CRLS1	10638	chr20:6012726:+	TRAPPC6A	20080	chr19:45668228:-	ONLY_REF_SPLICE	NO	50	69	0.04	0.03	0.0187	0.0187	{Klijn_CCL:Breast=1},CRLS1->cardiolipin_synthase_1,chr20:5986736-6020699:+,TRAPPC6A->chr19:45666186-45681495:-,trafficking_protein_particle_complex_6A	MDAMB468_BREAST	0.03	0.04	0.0374	TRUE	0	0	0	1	0	FALSE	ACH-000849
MDAMB468_BREAST	CTC-786C10.1--GSE1	1	1	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	45	1	0.04	0.0187	0.0187	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MDAMB468_BREAST	0.04	1	0.0374	TRUE	2	3	0	21	0	FALSE	ACH-000849
MDAMB468_BREAST	ITGA9--CTDSPL	1	1	ITGA9	20510	chr3:37725506:+	CTDSPL	42843	chr3:37988548:+	ONLY_REF_SPLICE	YES	0	5	1	0.29	0.0187	0.0187	{Klijn_CCL:Breast=1},NEIGHBORS[38446],ITGA9->Oncogene{Bushman},chr3:37493606-37865005:+,integrin_subunit_alpha_9,CTDSPL->CTD_small_phosphatase_like,chr3:37903451-38025960:+	MDAMB468_BREAST	0.29	1	0.0374	FALSE	0	0	0	1	0	FALSE	ACH-000849
MDAMB468_BREAST	RNF152--RP11-879F14.1	1	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0187	0.0187	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	MDAMB468_BREAST	0.4	1	0.0374	FALSE	275	472	65	43	0	FALSE	ACH-000849
MDAMB468_BREAST	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0187	0.0187	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB468_BREAST	0.67	1	0.0374	FALSE	407	2205	196	549	0	FALSE	ACH-000849
MDAMB468_BREAST	UBR5--SLC25A32	1	1	UBR5	1669	chr8:103424401:-	SLC25A32	62040	chr8:104414282:-	ONLY_REF_SPLICE	NO	4	102	0.33	0.02	0.0187	0.0187	{Klijn_CCL:Breast=1},UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32	MDAMB468_BREAST	0.02	0.33	0.0374	TRUE	0	0	0	1	0	FALSE	ACH-000849
MPP89_PLEURA	SNRNP70--CD37	188	49	SNRNP70	9112	chr19:49606844:+	CD37	16980	chr19:49840166:+	ONLY_REF_SPLICE	YES	487	2	0.33	0.99	1.6074	0.419	SNRNP70->chr19:49588676-49611862:+,small_nuclear_ribonucleoprotein_U1_subunit_70,CD37->CD37_molecule,chr19:49838428-49846592:+	MPP89_PLEURA	0.33	0.99	2.0264	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	USP34--XPO1	176	10	USP34	1120	chr2:61697785:-	XPO1	85339	chr2:61729445:-	ONLY_REF_SPLICE	YES	15	232	0.93	0.44	1.5048	0.0855	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	MPP89_PLEURA	0.44	0.93	1.5903	TRUE	0	1	0	4	1	TRUE	ACH-000319
MPP89_PLEURA	TIMM23B--LINC00843	103	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8807	0.1796	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MPP89_PLEURA	1	1	1.0603	TRUE	508	994	45	981	0	FALSE	ACH-000319
MPP89_PLEURA	RANBP17--WWC1	87	12	RANBP17	5787	chr5:170319557:+	WWC1	74369	chr5:167887655:+	ONLY_REF_SPLICE	YES	13	60	0.88	0.62	0.7439	0.1026	RANBP17->Oncogene{Bushman},RAN_binding_protein_17,chr5:170288874-170727019:+,WWC1->WW_and_C2_domain_containing_1,chr5:167718656-167899308:+	MPP89_PLEURA	0.62	0.88	0.8465	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	PLXDC1--TAF13	61	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5216	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	MPP89_PLEURA	1	1	0.5216	TRUE	7	10	0	216	0	FALSE	ACH-000319
MPP89_PLEURA	PXDN--NRXN1	58	9	PXDN	10487	chr2:1677415:-	NRXN1	73346	chr2:50464108:-	ONLY_REF_SPLICE	YES	69	0	0.49	1	0.4959	0.077	PXDN->chr2:1635659-1748624:-,peroxidasin,NRXN1->chr2:50145643-51259674:-,neurexin_1	MPP89_PLEURA	0.49	1	0.5729	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	VCP--PIGO	50	19	VCP	5108	chr9:35066672:-	PIGO	19155	chr9:35095563:-	ONLY_REF_SPLICE	YES	308	6	0.18	0.92	0.4275	0.1625	LOCAL_REARRANGEMENT:-:[15439],VCP->chr9:35056061-35073246:-,valosin_containing_protein,PIGO->chr9:35088685-35096591:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_O	MPP89_PLEURA	0.18	0.92	0.59	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	TIMM23--RP11-464F9.1	51	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	227	4	0.2	0.93	0.4361	0.0428	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MPP89_PLEURA	0.2	0.93	0.4789	TRUE	519	3926	326	965	0	FALSE	ACH-000319
MPP89_PLEURA	EHBP1--AC092155.4	40	12	EHBP1	3887	chr2:62934430:+	AC092155.4	39381	chr2:62858700:-	ONLY_REF_SPLICE	YES	41	0	0.56	1	0.342	0.1026	LOCAL_INVERSION:+:-:[11197],EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,AC092155.4->chr2:62817390-62889789:-	MPP89_PLEURA	0.56	1	0.4446	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	ZNF654--HMGB2	41	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3506	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MPP89_PLEURA	1	1	0.3506	TRUE	0	0	0	518	0	FALSE	ACH-000319
MPP89_PLEURA	WDR62--MXD1	36	3	WDR62	23875	chr19:36585066:+	MXD1	41205	chr2:70162483:+	ONLY_REF_SPLICE	YES	31	3	0.56	0.93	0.3078	0.0257	WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+,MXD1->MAX_dimerization_protein_1,Oncogene{Bushman},chr2:70124820-70170077:+	MPP89_PLEURA	0.56	0.93	0.3335	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	PXDN--NRXN1	30	24	PXDN	16545	chr2:1667377:-	NRXN1	73346	chr2:50464108:-	ONLY_REF_SPLICE	YES	56	0	0.49	1	0.2565	0.2052	PXDN->chr2:1635659-1748624:-,peroxidasin,NRXN1->chr2:50145643-51259674:-,neurexin_1	MPP89_PLEURA	0.49	1	0.4617	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	TMEM68--TOX	32	3	TMEM68	1139	chr8:56685828:-	TOX	20935	chr8:59872567:-	ONLY_REF_SPLICE	YES	10	11	0.78	0.76	0.2736	0.0257	TMEM68->chr8:56608983-56685966:-,transmembrane_protein_68,TOX->chr8:59717977-60031767:-,thymocyte_selection_associated_high_mobility_group_box	MPP89_PLEURA	0.76	0.78	0.2993	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	RP11-123O10.4--GRIP1	29	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.248	0.0513	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MPP89_PLEURA	1	1	0.2993	FALSE	416	2512	207	587	0	FALSE	ACH-000319
MPP89_PLEURA	IFT88--HSPH1	27	1	IFT88	1811	chr13:21141395:+	HSPH1	39946	chr13:31725879:-	ONLY_REF_SPLICE	YES	1	132	0.97	0.17	0.2309	0.0086	IFT88->chr13:21140585-21265503:+,intraflagellar_transport_88,HSPH1->Oncogene{Bushman},chr13:31710762-31736525:-,heat_shock_protein_family_H_(Hsp110)_member_1	MPP89_PLEURA	0.17	0.97	0.2395	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	C3--R3HDML	24	10	C3	15189	chr19:6702138:-	R3HDML	39074	chr20:42979635:+	INCL_NON_REF_SPLICE	YES	15	0	0.69	1	0.2052	0.0855	C3->chr19:6677715-6730573:-,complement_component_3,R3HDML->R3H_domain_containing_like,chr20:42965626-42979875:+	MPP89_PLEURA	0.69	1	0.2907	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	PXDN--NRXN1	22	16	PXDN	14075	chr2:1669986:-	NRXN1	73346	chr2:50464108:-	ONLY_REF_SPLICE	YES	54	0	0.41	1	0.1881	0.1368	PXDN->chr2:1635659-1748624:-,peroxidasin,NRXN1->chr2:50145643-51259674:-,neurexin_1	MPP89_PLEURA	0.41	1	0.3249	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	EHBP1--AC092155.4	19	2	EHBP1	3887	chr2:62934430:+	AC092155.4	45345	chr2:62817712:-	ONLY_REF_SPLICE	YES	41	1	0.34	0.95	0.1625	0.0171	LOCAL_INVERSION:+:-:[11197],EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,AC092155.4->chr2:62817390-62889789:-	MPP89_PLEURA	0.34	0.95	0.1796	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	NPM1P24--SET	18	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1539	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MPP89_PLEURA	1	1	0.1539	TRUE	0	0	0	434	0	FALSE	ACH-000319
MPP89_PLEURA	COL1A1--COL7A1	16	1	COL1A1	6491	chr17:48273284:-	COL7A1	45055	chr3:48609478:-	ONLY_REF_SPLICE	NO	814	199	0.02	0.08	0.1368	0.0086	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	MPP89_PLEURA	0.02	0.08	0.1454	TRUE	0	0	0	2	0	FALSE	ACH-000319
MPP89_PLEURA	RGL1--RP11-522D2.1	14	1	RGL1	3691	chr1:183711424:+	RP11-522D2.1	30308	chr1:180531340:+	ONLY_REF_SPLICE	YES	12	0	0.56	1	0.1197	0.0086	RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1,RP11-522D2.1->chr1:180528112-180535654:+	MPP89_PLEURA	0.56	1	0.1283	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	PDE6B--PPP2R2D	13	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1112	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	MPP89_PLEURA	1	1	0.1112	TRUE	7	65	3	22	0	FALSE	ACH-000319
MPP89_PLEURA	RP11-680G10.1--GSE1	12	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.64	0.1026	0.0342	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MPP89_PLEURA	0.64	1	0.1368	TRUE	458	1351	185	561	0	FALSE	ACH-000319
MPP89_PLEURA	CCDC88A--RTN4	9	10	CCDC88A	8066	chr2:55615914:-	RTN4	62662	chr2:55214834:-	ONLY_REF_SPLICE	YES	30	191	0.39	0.09	0.077	0.0855	CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	MPP89_PLEURA	0.09	0.39	0.1625	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	NRIP1--AF127936.7	11	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.0941	0.0086	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MPP89_PLEURA	0.86	1	0.1027	FALSE	292	1546	117	613	0	FALSE	ACH-000319
MPP89_PLEURA	PRKCH--HIF1A	10	2	PRKCH	14432	chr14:61858006:+	HIF1A	51667	chr14:62200856:+	ONLY_REF_SPLICE	YES	0	130	1	0.08	0.0855	0.0171	PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	MPP89_PLEURA	0.08	1	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	RP11-680G10.1--GSE1	10	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	23	1	0.34	0.0855	0.0171	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MPP89_PLEURA	0.34	1	0.1026	TRUE	465	1949	224	605	0	FALSE	ACH-000319
MPP89_PLEURA	RP11-96H19.1--RP11-446N19.1	10	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.0855	0.0086	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MPP89_PLEURA	0.85	1	0.0941	FALSE	515	4851	409	746	0	FALSE	ACH-000319
MPP89_PLEURA	RP4-565E6.1--HYDIN	9	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.077	0.0342	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	MPP89_PLEURA	1	1	0.1112	TRUE	456	1387	91	133	0	FALSE	ACH-000319
MPP89_PLEURA	MT-ND6--MT-TE	9	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.077	0.0086	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MPP89_PLEURA	1	1	0.0856	FALSE	499	1288	110	792	0	FALSE	ACH-000319
MPP89_PLEURA	DSE--FAM26D	8	4	DSE	4763	chr6:116601423:+	FAM26D	30580	chr6:116878988:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0684	0.0342	NEIGHBORS[87750],DSE->chr6:116575336-116762424:+,dermatan_sulfate_epimerase,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	MPP89_PLEURA	1	1	0.1026	FALSE	0	0	0	1	0	FALSE	ACH-000319
MPP89_PLEURA	FBLN2--MT-CO1	9	0	FBLN2	10496	chr3:13655634:+	MT-CO1	26175	chrM:5916:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.077	0	FBLN2->chr3:13573824-13679922:+,fibulin_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MPP89_PLEURA	1	1	0.077	FALSE	0	0	0	7	0	FALSE	ACH-000319
MPP89_PLEURA	PDE6B--PPP2R2D	8	0	PDE6B	1510	chr4:619882:+	PPP2R2D	25830	chr10:133753533:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0684	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	MPP89_PLEURA	1	1	0.0684	TRUE	5	45	2	9	0	FALSE	ACH-000319
MPP89_PLEURA	QKI--PACRG	6	8	QKI	10630	chr6:163956157:+	PACRG	37534	chr6:163483182:+	ONLY_REF_SPLICE	YES	174	0	0.07	1	0.0513	0.0684	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	MPP89_PLEURA	0.07	1	0.1197	TRUE	0	2	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	SNRNP70--CD37	7	3	SNRNP70	6996	chr19:49604728:+	CD37	16980	chr19:49840166:+	ONLY_REF_SPLICE	YES	431	2	0.02	0.83	0.0599	0.0257	SNRNP70->chr19:49588676-49611862:+,small_nuclear_ribonucleoprotein_U1_subunit_70,CD37->CD37_molecule,chr19:49838428-49846592:+	MPP89_PLEURA	0.02	0.83	0.0856	TRUE	0	0	0	1	0	FALSE	ACH-000319
MPP89_PLEURA	PXDN--NRXN1	3	18	PXDN	15192	chr2:1668730:-	NRXN1	73346	chr2:50464108:-	ONLY_REF_SPLICE	YES	65	0	0.24	1	0.0257	0.1539	PXDN->chr2:1635659-1748624:-,peroxidasin,NRXN1->chr2:50145643-51259674:-,neurexin_1	MPP89_PLEURA	0.24	1	0.1796	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	RP11-444D3.1--SOX5	7	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0599	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MPP89_PLEURA	1	1	0.0599	TRUE	477	1352	189	275	0	FALSE	ACH-000319
MPP89_PLEURA	MT-ND6--MT-TE	5	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0428	0.0513	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MPP89_PLEURA	1	1	0.0941	FALSE	499	1288	110	792	0	FALSE	ACH-000319
MPP89_PLEURA	WDR62--MXD1	6	2	WDR62	22741	chr19:36583713:+	MXD1	41205	chr2:70162483:+	ONLY_REF_SPLICE	YES	51	3	0.14	0.73	0.0513	0.0171	WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+,MXD1->MAX_dimerization_protein_1,Oncogene{Bushman},chr2:70124820-70170077:+	MPP89_PLEURA	0.14	0.73	0.0684	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	ACTN1--FTL	6	1	ACTN1	30946	chr14:69341503:-	FTL	34743	chr19:49468711:+	INCL_NON_REF_SPLICE	YES	791	5613	0.01	0	0.0513	0.0086	ACTN1->actinin_alpha_1,chr14:69340860-69446157:-,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	MPP89_PLEURA	0	0.01	0.0599	FALSE	0	0	0	3	0	FALSE	ACH-000319
MPP89_PLEURA	TMEM68--TOX	6	1	TMEM68	1139	chr8:56685828:-	TOX	22001	chr8:59852103:-	ONLY_REF_SPLICE	YES	10	17	0.41	0.29	0.0513	0.0086	TMEM68->chr8:56608983-56685966:-,transmembrane_protein_68,TOX->chr8:59717977-60031767:-,thymocyte_selection_associated_high_mobility_group_box	MPP89_PLEURA	0.29	0.41	0.0599	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	AC092594.1--PXDN	6	0	AC092594.1	1105	chr2:19546405:-	PXDN	36779	chr2:1658280:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0513	0	AC092594.1->chr2:19167729-19546509:-,PXDN->chr2:1635659-1748624:-,peroxidasin	MPP89_PLEURA	1	1	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	IFT88--HSPH1	6	0	IFT88	1811	chr13:21141395:+	HSPH1	40497	chr13:31725328:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0513	0	IFT88->chr13:21140585-21265503:+,intraflagellar_transport_88,HSPH1->Oncogene{Bushman},chr13:31710762-31736525:-,heat_shock_protein_family_H_(Hsp110)_member_1	MPP89_PLEURA	1	1	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	LARP1--KIF4B	6	0	LARP1	2848	chr5:154135753:+	KIF4B	27995	chr5:154393603:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0	LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+,KIF4B->chr5:154393260-154397685:+,kinesin_family_member_4B	MPP89_PLEURA	1	1	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	ZCCHC11--ARIH2	6	0	ZCCHC11	42910	chr1:52875156:-	ARIH2	52844	chr3:48964895:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0	GTEx_FI:{Muscle=[count:6=pct:2.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},ZCCHC11->chr1:52873954-53019159:-,zinc_finger_CCHC-type_containing_11,ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+	MPP89_PLEURA	1	1	0.0513	TRUE	9	30	5	4	0	FALSE	ACH-000319
MPP89_PLEURA	VCP--PIGO	1	19	VCP	5108	chr9:35066672:-	PIGO	18745	chr9:35095973:-	ONLY_REF_SPLICE	YES	308	2	0.06	0.91	0.0086	0.1625	LOCAL_REARRANGEMENT:-:[15439],VCP->chr9:35056061-35073246:-,valosin_containing_protein,PIGO->chr9:35088685-35096591:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_O	MPP89_PLEURA	0.06	0.91	0.1711	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	RGL1--RP11-522D2.1	5	2	RGL1	6007	chr1:183775619:+	RP11-522D2.1	30308	chr1:180531340:+	ONLY_REF_SPLICE	YES	14	0	0.33	1	0.0428	0.0171	RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1,RP11-522D2.1->chr1:180528112-180535654:+	MPP89_PLEURA	0.33	1	0.0599	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	ANTXR1--NR1H2	5	1	ANTXR1	19545	chr2:69397421:+	NR1H2	32940	chr19:50841259:+	ONLY_REF_SPLICE	YES	74	0	0.07	1	0.0428	0.0086	ANTXR1->anthrax_toxin_receptor_1,chr2:69240310-69476459:+,NR1H2->chr19:50832910-50886239:+,nuclear_receptor_subfamily_1_group_H_member_2	MPP89_PLEURA	0.07	1	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	PAWR--RP1-78O14.1	5	1	PAWR	15902	chr12:79986391:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	199	1	0.03	0.86	0.0428	0.0086	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	MPP89_PLEURA	0.03	0.86	0.0514	FALSE	3	4	0	12	0	FALSE	ACH-000319
MPP89_PLEURA	RGL1--RP11-522D2.1	5	1	RGL1	6007	chr1:183775619:+	RP11-522D2.1	31449	chr1:180534387:+	ONLY_REF_SPLICE	YES	14	3	0.3	0.67	0.0428	0.0086	RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1,RP11-522D2.1->chr1:180528112-180535654:+	MPP89_PLEURA	0.3	0.67	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	MT-ND6--MT-TE	3	8	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0.0684	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MPP89_PLEURA	1	1	0.0941	FALSE	499	1288	110	792	0	FALSE	ACH-000319
MPP89_PLEURA	PAWR--RP1-78O14.1	5	0	PAWR	2369	chr12:80083509:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0428	0	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	MPP89_PLEURA	1	1	0.0428	FALSE	0	7	0	7	0	FALSE	ACH-000319
MPP89_PLEURA	IFT88--HSPH1	4	2	IFT88	2340	chr13:21141924:+	HSPH1	39946	chr13:31725879:-	ONLY_REF_SPLICE	YES	7	132	0.46	0.04	0.0342	0.0171	IFT88->chr13:21140585-21265503:+,intraflagellar_transport_88,HSPH1->Oncogene{Bushman},chr13:31710762-31736525:-,heat_shock_protein_family_H_(Hsp110)_member_1	MPP89_PLEURA	0.04	0.46	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	MT-ND6--MT-TE	3	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0.0428	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MPP89_PLEURA	1	1	0.0685	FALSE	499	1288	110	792	0	FALSE	ACH-000319
MPP89_PLEURA	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	27	1203	0.16	0	0.0342	0.0086	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MPP89_PLEURA	0	0.16	0.0428	FALSE	0	0	0	434	0	FALSE	ACH-000319
MPP89_PLEURA	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	27	1218	0.16	0	0.0342	0.0086	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MPP89_PLEURA	0	0.16	0.0428	FALSE	0	0	0	434	0	FALSE	ACH-000319
MPP89_PLEURA	EHBP1--AC092155.4	1	12	EHBP1	3887	chr2:62934430:+	AC092155.4	38342	chr2:62889068:-	ONLY_REF_SPLICE	YES	41	0	0.24	1	0.0086	0.1026	LOCAL_INVERSION:+:-:[11197],EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,AC092155.4->chr2:62817390-62889789:-	MPP89_PLEURA	0.24	1	0.1112	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	TMEM68--TOX	3	4	TMEM68	1181	chr8:56685786:-	TOX	20935	chr8:59872567:-	ONLY_REF_SPLICE	YES	27	11	0.21	0.39	0.0257	0.0342	TMEM68->chr8:56608983-56685966:-,transmembrane_protein_68,TOX->chr8:59717977-60031767:-,thymocyte_selection_associated_high_mobility_group_box	MPP89_PLEURA	0.21	0.39	0.0599	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	CCDC88A--RTN4	3	3	CCDC88A	2106	chr2:55645952:-	RTN4	62662	chr2:55214834:-	ONLY_REF_SPLICE	YES	23	191	0.21	0.03	0.0257	0.0257	CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	MPP89_PLEURA	0.03	0.21	0.0514	TRUE	0	1	0	3	0	FALSE	ACH-000319
MPP89_PLEURA	AC098617.1--DNAH7	3	2	AC098617.1	1233	chr2:192711497:+	DNAH7	77659	chr2:196718252:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0257	0.0171	AC098617.1->chr2:192711265-192908909:+,DNAH7->chr2:196602427-196933536:-,dynein_axonemal_heavy_chain_7	MPP89_PLEURA	0.83	1	0.0428	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	USP34--XPO1	2	6	USP34	1120	chr2:61697785:-	XPO1	86654	chr2:61727029:-	ONLY_REF_SPLICE	YES	15	259	0.35	0.03	0.0171	0.0513	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	MPP89_PLEURA	0.03	0.35	0.0684	TRUE	0	0	0	1	0	FALSE	ACH-000319
MPP89_PLEURA	USP34--XPO1	1	10	USP34	1120	chr2:61697785:-	XPO1	80582	chr2:61761038:-	ONLY_REF_SPLICE	YES	15	306	0.42	0.03	0.0086	0.0855	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	MPP89_PLEURA	0.03	0.42	0.0941	TRUE	0	2	0	4	2	TRUE	ACH-000319
MPP89_PLEURA	DNAJC10--TRIM58	3	1	DNAJC10	18349	chr2:183619831:+	TRIM58	47148	chr1:248023919:+	ONLY_REF_SPLICE	YES	38	98	0.1	0.04	0.0257	0.0086	DNAJC10->DnaJ_heat_shock_protein_family_(Hsp40)_member_C10,chr2:183580999-183659191:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	MPP89_PLEURA	0.04	0.1	0.0343	TRUE	0	0	0	1	0	FALSE	ACH-000319
MPP89_PLEURA	IFI27--MT-ND4L	3	1	IFI27	8929	chr14:94582869:+	MT-ND4L	12095	chrM:10471:+	INCL_NON_REF_SPLICE	YES	927	0	0	1	0.0257	0.0086	IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MPP89_PLEURA	0	1	0.0343	FALSE	0	0	0	13	0	FALSE	ACH-000319
MPP89_PLEURA	MNAT1--SLC38A6	3	1	MNAT1	8799	chr14:61285565:+	SLC38A6	38791	chr14:61545548:+	ONLY_REF_SPLICE	YES	143	7	0.03	0.36	0.0257	0.0086	NEIGHBORS[11161],MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+,SLC38A6->chr14:61447832-61550451:+,solute_carrier_family_38_member_6	MPP89_PLEURA	0.03	0.36	0.0343	FALSE	0	1	0	2	0	FALSE	ACH-000319
MPP89_PLEURA	NPM1P24--SET	3	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	27	1214	0.13	0	0.0257	0.0086	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MPP89_PLEURA	0	0.13	0.0343	FALSE	0	0	0	434	0	FALSE	ACH-000319
MPP89_PLEURA	NRIP1--AF127936.7	3	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.22	1	0.0257	0.0086	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MPP89_PLEURA	0.22	1	0.0343	FALSE	164	806	69	479	0	FALSE	ACH-000319
MPP89_PLEURA	PLAGL1--LAMA2	3	1	PLAGL1	3525	chr6:144306272:-	LAMA2	71129	chr6:129781345:+	ONLY_REF_SPLICE	YES	40	1	0.09	0.8	0.0257	0.0086	PLAGL1->Oncogene{Bushman},PLAG1_like_zinc_finger_1,chr6:144261437-144385735:-,LAMA2->chr6:129204342-129837714:+,laminin_subunit_alpha_2	MPP89_PLEURA	0.09	0.8	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	RGL1--RP11-522D2.1	3	1	RGL1	3691	chr1:183711424:+	RP11-522D2.1	31449	chr1:180534387:+	ONLY_REF_SPLICE	YES	12	3	0.25	0.57	0.0257	0.0086	RGL1->Oncogene{Bushman},chr1:183605220-183897665:+,ral_guanine_nucleotide_dissociation_stimulator_like_1,RP11-522D2.1->chr1:180528112-180535654:+	MPP89_PLEURA	0.25	0.57	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	TMSB10--RPS2	3	1	TMSB10	1922	chr2:85133670:+	RPS2	7643	chr16:2012266:-	INCL_NON_REF_SPLICE	YES	830	3344	0	0	0.0257	0.0086	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2	MPP89_PLEURA	0	0	0.0343	FALSE	0	0	0	3	0	FALSE	ACH-000319
MPP89_PLEURA	COL1A1--NPM1	3	0	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	MPP89_PLEURA	1	1	0.0257	TRUE	0	0	0	31	0	FALSE	ACH-000319
MPP89_PLEURA	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MPP89_PLEURA	1	1	0.0257	FALSE	499	1288	110	792	0	FALSE	ACH-000319
MPP89_PLEURA	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MPP89_PLEURA	1	1	0.0257	FALSE	499	1288	110	792	0	FALSE	ACH-000319
MPP89_PLEURA	RNF152--RP11-879F14.1	3	0	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	MPP89_PLEURA	1	1	0.0257	FALSE	275	472	65	43	0	FALSE	ACH-000319
MPP89_PLEURA	TMSB10--RPS2	3	0	TMSB10	1889	chr2:85133637:+	RPS2	7385	chr16:2012524:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2	MPP89_PLEURA	1	1	0.0257	TRUE	0	0	0	3	0	TRUE	ACH-000319
MPP89_PLEURA	TXNRD1--CHST11	2	3	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	YES	1821	5	0	0.5	0.0171	0.0257	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	MPP89_PLEURA	0	0.5	0.0428	FALSE	0	2	1	13	2	FALSE	ACH-000319
MPP89_PLEURA	DSE--FAM26D	2	2	DSE	2645	chr6:116580130:+	FAM26D	30580	chr6:116878988:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0.0171	NEIGHBORS[87750],DSE->chr6:116575336-116762424:+,dermatan_sulfate_epimerase,FAM26D->chr6:116850174-116880031:+,family_with_sequence_similarity_26_member_D	MPP89_PLEURA	1	1	0.0342	FALSE	0	0	0	1	0	FALSE	ACH-000319
MPP89_PLEURA	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	36	0.5	0.1	0.0171	0.0171	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MPP89_PLEURA	0.1	0.5	0.0342	FALSE	16	356	14	466	0	FALSE	ACH-000319
MPP89_PLEURA	AGAP1--ACKR3	2	1	AGAP1	1761	chr2:236403493:+	ACKR3	42236	chr2:237489083:+	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0171	0.0086	AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,ACKR3->atypical_chemokine_receptor_3,chr2:237476430-237491001:+	MPP89_PLEURA	0.43	1	0.0257	TRUE	0	1	0	1	1	TRUE	ACH-000319
MPP89_PLEURA	COL1A1--COL7A1	2	1	COL1A1	11597	chr17:48268178:-	COL7A1	48566	chr3:48605967:-	ONLY_REF_SPLICE	NO	568	333	0.01	0.01	0.0171	0.0086	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	MPP89_PLEURA	0.01	0.01	0.0257	FALSE	0	0	0	2	0	FALSE	ACH-000319
MPP89_PLEURA	RP4-565E6.1--HYDIN	2	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0171	0.0086	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	MPP89_PLEURA	0.75	1	0.0257	TRUE	84	87	4	41	0	FALSE	ACH-000319
MPP89_PLEURA	CTB-78F1.2--TENM2	2	0	CTB-78F1.2	1045	chr5:167148412:+	TENM2	14028	chr5:167379593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	NEIGHBORS_OVERLAP:+:+:[7761],CTB-78F1.2->chr5:167148368-167156129:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	MPP89_PLEURA	1	1	0.0171	FALSE	1	4	0	8	0	FALSE	ACH-000319
MPP89_PLEURA	DEGS1--NVL	2	0	DEGS1	2440	chr1:224371120:+	NVL	33819	chr1:224438020:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx_v2:{count=3;pct=0.03%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:+:-:[33893],DEGS1->chr1:224363458-224381143:+,delta(4)-desaturase,_sphingolipid_1,NVL->chr1:224415036-224518089:-,nuclear_VCP-like	MPP89_PLEURA	1	1	0.0171	TRUE	1	1	0	3	1	TRUE	ACH-000319
MPP89_PLEURA	HIF1A-AS2--RP11-902B17.1	2	0	HIF1A-AS2	1213	chr14:62217603:-	RP11-902B17.1	7818	chr14:61773953:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	HIF1A-AS2->HIF1A_antisense_RNA_2,chr14:62182276-62217815:-,RP11-902B17.1->chr14:61764882-61789536:-	MPP89_PLEURA	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	MTIF2--RPS27A	2	0	MTIF2	2779	chr2:55494705:-	RPS27A	21992	chr2:55461255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	LOCAL_INVERSION:-:+:[742],MTIF2->chr2:55463731-55496483:-,mitochondrial_translational_initiation_factor_2,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	MPP89_PLEURA	1	1	0.0171	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	SLC35E4--OSBP2	2	0	SLC35E4	2418	chr22:31033056:+	OSBP2	14958	chr22:31090195:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	NEIGHBORS[24766],SLC35E4->chr22:31031639-31065003:+,solute_carrier_family_35_member_E4,OSBP2->chr22:31089769-31303811:+,oxysterol_binding_protein_2	MPP89_PLEURA	1	1	0.0171	FALSE	0	1	0	3	0	FALSE	ACH-000319
MPP89_PLEURA	SLC35E4--OSBP2	2	0	SLC35E4	2418	chr22:31033056:+	OSBP2	26424	chr22:31266416:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	NEIGHBORS[24766],SLC35E4->chr22:31031639-31065003:+,solute_carrier_family_35_member_E4,OSBP2->chr22:31089769-31303811:+,oxysterol_binding_protein_2	MPP89_PLEURA	1	1	0.0171	FALSE	0	2	0	3	0	FALSE	ACH-000319
MPP89_PLEURA	TPM2--ACTG1	2	0	TPM2	4592	chr9:35685061:-	ACTG1	14213	chr17:79478652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0171	0	GTEx&tcga_normals:114/3694=3.09%,GTEx:2.09%,GTEx_FI:{Blood_Vessel=[count:158=pct:42.8],Esophagus=[count:132=pct:32.6],Colon=[count:59=pct:30.9],Heart=[count:15=pct:6.0],Prostate=[count:9=pct:14.8],Stomach=[count:8=pct:9.0],Adipose_Tissue=[count:6=pct:2.0],Uterus=[count:4=pct:9.3],Small_Intestine=[count:3=pct:5.5],Vagina=[count:3=pct:5.5],Bladder=[count:2=pct:22.2],Lung=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Breast=[count:1=pct:0.9],_not_provided_=[count:1=pct:100.0],Fallopian_Tube=[count:1=pct:16.7],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=484;pct=5.59%;dist=Artery_-_Tibial=130,Esophagus_-_Muscularis=91,Esophagus_-_Gastroesophageal_Junction=56,Colon_-_Sigmoid=48,Artery_-_Coronary=29,Artery_-_Aorta=28,Colon_-_Transverse=23,Stomach=15,Adipose_-_Subcutaneous=13,Prostate=10,Uterus=8,Esophagus_-_Mucosa=6,Small_Intestine_-_Terminal_Ileum=5,Heart_-_Left_Ventricle=5,Heart_-_Atrial_Appendage=5,Breast_-_Mammary_Tissue=2,Vagina=2,Bladder=2,Ovary=1,Lung=1,Adipose_-_Visceral_(Omentum)=1,Muscle_-_Skeletal=1,Cells_-_Transformed_fibroblasts=1,Fallopian_Tube=1},TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),ACTG1->actin_gamma_1,chr17:79476997-79490873:-	MPP89_PLEURA	1	1	0.0171	TRUE	237	57	25	9	0	FALSE	ACH-000319
MPP89_PLEURA	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0.0257	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MPP89_PLEURA	1	1	0.0343	FALSE	467	2173	244	435	0	FALSE	ACH-000319
MPP89_PLEURA	TXNRD1--CHST11	1	3	TXNRD1	19613	chr12:104713363:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	YES	1981	5	0	0.44	0.0086	0.0257	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	MPP89_PLEURA	0	0.44	0.0343	FALSE	0	0	0	1	0	FALSE	ACH-000319
MPP89_PLEURA	USP34--XPO1	1	3	USP34	1120	chr2:61697785:-	XPO1	87635	chr2:61726048:-	ONLY_REF_SPLICE	NO	15	322	0.21	0.01	0.0086	0.0257	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	MPP89_PLEURA	0.01	0.21	0.0343	FALSE	0	0	0	2	0	FALSE	ACH-000319
MPP89_PLEURA	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	6	36	0.33	0.08	0.0086	0.0171	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MPP89_PLEURA	0.08	0.33	0.0257	FALSE	0	48	1	163	0	FALSE	ACH-000319
MPP89_PLEURA	COL1A1--COL7A1	1	1	COL1A1	11597	chr17:48268178:-	COL7A1	47452	chr3:48607081:-	ONLY_REF_SPLICE	YES	568	144	0	0.01	0.0086	0.0086	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	MPP89_PLEURA	0	0.01	0.0172	FALSE	0	0	0	2	0	FALSE	ACH-000319
MPP89_PLEURA	COL1A1--COL7A1	1	1	COL1A1	11597	chr17:48268178:-	COL7A1	48245	chr3:48606288:-	ONLY_REF_SPLICE	NO	568	204	0	0.01	0.0086	0.0086	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	MPP89_PLEURA	0	0.01	0.0172	FALSE	0	0	0	2	0	FALSE	ACH-000319
MPP89_PLEURA	MAGI2-IT1--MAGI2	1	1	MAGI2-IT1	3338	chr7:78531813:-	MAGI2	11705	chr7:78256555:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0.0086	NEIGHBORS_OVERLAP:-:-:[99023],MAGI2-IT1->MAGI2_intronic_transcript_1,chr7:78530591-78629614:-,MAGI2->ArcherDX_panel,FoundationOne_panel,chr7:77646393-79082890:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_2	MPP89_PLEURA	1	1	0.0172	FALSE	2	2	0	1	0	FALSE	ACH-000319
MPP89_PLEURA	MAGI2-IT1--MAGI2	1	1	MAGI2-IT1	1094	chr7:78629521:-	MAGI2	11705	chr7:78256555:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0086	0.0086	NEIGHBORS_OVERLAP:-:-:[99023],MAGI2-IT1->MAGI2_intronic_transcript_1,chr7:78530591-78629614:-,MAGI2->ArcherDX_panel,FoundationOne_panel,chr7:77646393-79082890:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_2	MPP89_PLEURA	1	1	0.0172	FALSE	4	7	0	2	0	FALSE	ACH-000319
MPP89_PLEURA	MNAT1--SLC38A6	1	1	MNAT1	8799	chr14:61285565:+	SLC38A6	38771	chr14:61545528:+	ONLY_REF_SPLICE	YES	143	7	0.01	0.22	0.0086	0.0086	NEIGHBORS[11161],MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+,SLC38A6->chr14:61447832-61550451:+,solute_carrier_family_38_member_6	MPP89_PLEURA	0.01	0.22	0.0172	FALSE	0	1	0	2	0	FALSE	ACH-000319
MPP89_PLEURA	MNAT1--SLC38A6	1	1	MNAT1	9934	chr14:61346553:+	SLC38A6	18391	chr14:61451448:+	ONLY_REF_SPLICE	NO	114	45	0.02	0.04	0.0086	0.0086	NEIGHBORS[11161],MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+,SLC38A6->chr14:61447832-61550451:+,solute_carrier_family_38_member_6	MPP89_PLEURA	0.02	0.04	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000319
MPP89_PLEURA	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.0086	0.0086	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MPP89_PLEURA	0.11	1	0.0172	FALSE	125	705	46	456	0	FALSE	ACH-000319
MPP89_PLEURA	NRXN3--CEP128	1	1	NRXN3	27051	chr14:79746881:+	CEP128	78945	chr14:80997230:-	ONLY_REF_SPLICE	YES	18	7	0.1	0.22	0.0086	0.0086	NRXN3->chr14:78708734-80330762:+,neurexin_3,CEP128->centrosomal_protein_128,chr14:80943330-81425861:-	MPP89_PLEURA	0.1	0.22	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	NRXN3--CEP128	1	1	NRXN3	31813	chr14:79933745:+	CEP128	63413	chr14:81307112:-	ONLY_REF_SPLICE	YES	20	14	0.09	0.12	0.0086	0.0086	NRXN3->chr14:78708734-80330762:+,neurexin_3,CEP128->centrosomal_protein_128,chr14:80943330-81425861:-	MPP89_PLEURA	0.09	0.12	0.0172	TRUE	0	0	0	1	0	FALSE	ACH-000319
MPP89_PLEURA	PLAGL1--LAMA2	1	1	PLAGL1	2463	chr6:144329227:-	LAMA2	71129	chr6:129781345:+	ONLY_REF_SPLICE	YES	36	1	0.05	0.67	0.0086	0.0086	PLAGL1->Oncogene{Bushman},PLAG1_like_zinc_finger_1,chr6:144261437-144385735:-,LAMA2->chr6:129204342-129837714:+,laminin_subunit_alpha_2	MPP89_PLEURA	0.05	0.67	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000319
MPP89_PLEURA	RP11-466I1.1--CTD-3012A18.1	1	1	RP11-466I1.1	2424	chr11:29233312:+	CTD-3012A18.1	8905	chr11:29573907:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0.0086	RP11-466I1.1->chr11:29181503-29288281:+,CTD-3012A18.1->chr11:29540623-29574186:+	MPP89_PLEURA	1	1	0.0172	TRUE	0	2	0	4	2	TRUE	ACH-000319
MPP89_PLEURA	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.5	1	0.0086	0.0086	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MPP89_PLEURA	0.5	1	0.0172	FALSE	407	2205	196	549	0	FALSE	ACH-000319
MPP89_PLEURA	SLC2A4RG--LAMA5	1	1	SLC2A4RG	3755	chr20:62373968:+	LAMA5	24808	chr20:60906000:-	ONLY_REF_SPLICE	YES	139	157	0.01	0.01	0.0086	0.0086	SLC2A4RG->SLC2A4_regulator,chr20:62371214-62374858:+,LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5	MPP89_PLEURA	0.01	0.01	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000319
MPP89_PLEURA	TXNRD1--CHST11	1	1	TXNRD1	16815	chr12:104707095:+	CHST11	40027	chr12:105150727:+	ONLY_REF_SPLICE	YES	1847	11	0	0.15	0.0086	0.0086	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	MPP89_PLEURA	0	0.15	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000319
NCIH2228_LUNG	DCBLD2--STXBP5L	136	28	DCBLD2	19623	chr3:98526925:-	STXBP5L	53859	chr3:121037322:+	ONLY_REF_SPLICE	YES	401	0	0.29	1	1.2849	0.2645	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,STXBP5L->chr3:120626919-121143608:+,syntaxin_binding_protein_5_like	NCIH2228_LUNG	0.29	1	1.5494	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	TIMM23B--LINC00843	83	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7842	0.1701	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2228_LUNG	1	1	0.9543	TRUE	508	994	45	981	0	FALSE	ACH-000447
NCIH2228_LUNG	EML4--ALK	41	27	EML4	8523	chr2:42492091:+	ALK	58055	chr2:29446394:-	ONLY_REF_SPLICE	YES	99	0	0.41	1	0.3874	0.2551	Cosmic{samples=10751,mutations=680,papers=477},YOSHIHARA_TCGA_num_samples[LUAD:4|THCA:1],chimerdb_pubmed{nonsmallcell lung cancer (NSCLC),nonsmall cell lung cancers (NSCLC),lung cancer,nonsmall cell lung cancer (NSCLC),nonsmall cell lung carcinoma,lung cancers,nonsmallcell lung cancers (NSCLC)},{Klijn_CCL:Lung=1},EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	NCIH2228_LUNG	0.41	1	0.6425	TRUE	0	2	0	2	2	TRUE	ACH-000447
NCIH2228_LUNG	TIMM23--RP11-464F9.1	44	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	137	2	0.25	0.96	0.4157	0.0094	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2228_LUNG	0.25	0.96	0.4251	TRUE	519	3926	326	965	0	FALSE	ACH-000447
NCIH2228_LUNG	KATNAL1--ZC3H13	43	3	KATNAL1	1154	chr13:30881468:-	ZC3H13	32024	chr13:46563232:-	ONLY_REF_SPLICE	YES	4	16	0.92	0.74	0.4062	0.0283	KATNAL1->chr13:30776767-30881621:-,katanin_catalytic_subunit_A1_like_1,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	NCIH2228_LUNG	0.74	0.92	0.4345	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	ZNF654--HMGB2	42	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3968	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2228_LUNG	1	1	0.3968	TRUE	0	0	0	518	0	FALSE	ACH-000447
NCIH2228_LUNG	KANSL1--ARL17B	37	12	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	37	18	0.57	0.73	0.3496	0.1134	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH2228_LUNG	0.57	0.73	0.463	TRUE	181	1564	124	196	0	FALSE	ACH-000447
NCIH2228_LUNG	ALK--PTPN3	35	4	ALK	15358	chr2:29497965:-	PTPN3	41075	chr9:112219679:-	ONLY_REF_SPLICE	YES	0	21	1	0.65	0.3307	0.0378	ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-,PTPN3->chr9:112137746-112260590:-,protein_tyrosine_phosphatase,_non-receptor_type_3	NCIH2228_LUNG	0.65	1	0.3685	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	NPM1P24--SET	31	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2929	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2228_LUNG	1	1	0.2929	TRUE	0	0	0	434	0	FALSE	ACH-000447
NCIH2228_LUNG	XPA--RP11-15J10.8	25	0	XPA	8436	chr9:100437771:-	RP11-15J10.8	15534	chr9:70114081:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2362	0	XPA->Oncogene{Bushman},chr9:100437191-100459639:-,xeroderma_pigmentosum,_complementation_group_A,RP11-15J10.8->chr9:70113593-70124467:-	NCIH2228_LUNG	1	1	0.2362	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	PTCH1--LUC7L2	22	5	PTCH1	4844	chr9:98268689:-	LUC7L2	43107	chr7:139060808:+	ONLY_REF_SPLICE	YES	1	1	0.96	0.96	0.2078	0.0472	{Klijn_CCL:Lung=1},PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	NCIH2228_LUNG	0.96	0.96	0.255	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	MT-ND6--MT-TE	22	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2078	0.0189	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2228_LUNG	1	1	0.2267	FALSE	499	1288	110	792	0	FALSE	ACH-000447
NCIH2228_LUNG	EML4--ALK	14	21	EML4	8303	chr2:42491871:+	ALK	58055	chr2:29446394:-	ONLY_REF_SPLICE	YES	93	0	0.27	1	0.1323	0.1984	Cosmic{samples=10751,mutations=680,papers=477},YOSHIHARA_TCGA_num_samples[LUAD:4|THCA:1],chimerdb_pubmed{nonsmallcell lung cancer (NSCLC),nonsmall cell lung cancers (NSCLC),lung cancer,nonsmall cell lung cancer (NSCLC),nonsmall cell lung carcinoma,lung cancers,nonsmallcell lung cancers (NSCLC)},{Klijn_CCL:Lung=1},EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	NCIH2228_LUNG	0.27	1	0.3307	TRUE	0	2	0	2	2	TRUE	ACH-000447
NCIH2228_LUNG	SND1--CFTR	18	5	SND1	24978	chr7:127631109:+	CFTR	68632	chr7:117267576:+	ONLY_REF_SPLICE	YES	108	0	0.18	1	0.1701	0.0472	{Klijn_CCL:Lung=1},SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1,CFTR->chr7:117105838-117356025:+,cystic_fibrosis_transmembrane_conductance_regulator	NCIH2228_LUNG	0.18	1	0.2173	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	MT-TA--MT-TC	18	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1701	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2228_LUNG	1	1	0.1795	FALSE	462	80	0	856	0	FALSE	ACH-000447
NCIH2228_LUNG	PLXDC1--TAF13	16	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1512	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH2228_LUNG	1	1	0.1512	TRUE	7	10	0	216	0	FALSE	ACH-000447
NCIH2228_LUNG	RP11-96H19.1--RP11-446N19.1	13	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.1228	0.0189	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2228_LUNG	0.94	1	0.1417	FALSE	515	4851	409	746	0	FALSE	ACH-000447
NCIH2228_LUNG	RP11-123O10.4--GRIP1	13	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	2	1	0.88	0.1228	0.0094	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2228_LUNG	0.88	1	0.1322	FALSE	416	2512	207	587	0	FALSE	ACH-000447
NCIH2228_LUNG	HSP90AB1--MT-RNR2	11	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1555	0	0.01	1	0.1039	0.0283	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2228_LUNG	0.01	1	0.1322	FALSE	13	9	0	364	0	FALSE	ACH-000447
NCIH2228_LUNG	ANP32B--SEPT7	11	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1039	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	NCIH2228_LUNG	1	1	0.1039	TRUE	1	1	0	18	1	TRUE	ACH-000447
NCIH2228_LUNG	CTD-2337A12.1--CAST	10	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	34	1	0.26	0.0945	0.0189	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH2228_LUNG	0.26	1	0.1134	TRUE	347	1186	183	220	0	FALSE	ACH-000447
NCIH2228_LUNG	FTL--RPL39	10	0	FTL	1095	chr19:49468652:+	RPL39	5592	chrX:118925593:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0945	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	NCIH2228_LUNG	1	1	0.0945	TRUE	0	0	0	3	0	TRUE	ACH-000447
NCIH2228_LUNG	HSP90AB1--MT-RNR2	9	4	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1579	0	0.01	1	0.085	0.0378	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2228_LUNG	0.01	1	0.1228	FALSE	13	9	0	364	0	FALSE	ACH-000447
NCIH2228_LUNG	KATNAL1--ZC3H13	9	3	KATNAL1	1545	chr13:30881077:-	ZC3H13	32024	chr13:46563232:-	ONLY_REF_SPLICE	YES	7	16	0.63	0.43	0.085	0.0283	KATNAL1->chr13:30776767-30881621:-,katanin_catalytic_subunit_A1_like_1,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	NCIH2228_LUNG	0.43	0.63	0.1133	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	RP4-565E6.1--HYDIN	9	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.085	0.0189	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH2228_LUNG	1	1	0.1039	TRUE	456	1387	91	133	0	FALSE	ACH-000447
NCIH2228_LUNG	PTCH1--LUC7L2	6	6	PTCH1	4844	chr9:98268689:-	LUC7L2	41986	chr7:139030247:+	ONLY_REF_SPLICE	YES	1	45	0.92	0.21	0.0567	0.0567	{Klijn_CCL:Lung=1},PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	NCIH2228_LUNG	0.21	0.92	0.1134	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	EIF1--RPS28	7	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH2228_LUNG	1	1	0.0661	TRUE	0	0	0	81	0	FALSE	ACH-000447
NCIH2228_LUNG	FTH1--ACTB	6	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	491	0	0.02	1	0.0567	0.0189	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH2228_LUNG	0.02	1	0.0756	TRUE	1	0	0	97	0	FALSE	ACH-000447
NCIH2228_LUNG	RP1-34H18.1--NAV3	6	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	5	1	0.62	0.0567	0.0189	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH2228_LUNG	0.62	1	0.0756	TRUE	254	575	65	124	0	FALSE	ACH-000447
NCIH2228_LUNG	RP11-1L12.3--SLC5A12	6	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	11	0	0.39	1	0.0567	0.0094	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	NCIH2228_LUNG	0.39	1	0.0661	TRUE	3	101	0	60	0	FALSE	ACH-000447
NCIH2228_LUNG	VIM-AS1--LMAN2	6	1	VIM-AS1	1641	chr10:17271344:-	LMAN2	12830	chr5:176764251:-	ONLY_REF_SPLICE	YES	0	561	1	0.01	0.0567	0.0094	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,LMAN2->chr5:176758563-176778853:-,lectin,_mannose_binding_2	NCIH2228_LUNG	0.01	1	0.0661	FALSE	0	0	0	1	0	FALSE	ACH-000447
NCIH2228_LUNG	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2228_LUNG	1	1	0.0567	FALSE	462	80	0	856	0	FALSE	ACH-000447
NCIH2228_LUNG	COX7A2L--MAP4K3	5	2	COX7A2L	16383	chr2:42560807:-	MAP4K3	30949	chr2:39542529:-	INCL_NON_REF_SPLICE	YES	0	26	1	0.21	0.0472	0.0189	COX7A2L->chr2:42560686-42652228:-,cytochrome_c_oxidase_subunit_7A2_like,MAP4K3->chr2:39476407-39664453:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_3	NCIH2228_LUNG	0.21	1	0.0661	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0472	0.0189	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2228_LUNG	1	1	0.0661	FALSE	407	2205	196	549	0	FALSE	ACH-000447
NCIH2228_LUNG	NRIP1--AF127936.7	5	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.4	1	0.0472	0.0094	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2228_LUNG	0.4	1	0.0566	FALSE	125	705	46	456	0	FALSE	ACH-000447
NCIH2228_LUNG	RP11-448A19.1--SND1	5	1	RP11-448A19.1	1269	chr7:129251203:-	SND1	17043	chr7:127334882:+	INCL_NON_REF_SPLICE	YES	3	141	0.67	0.04	0.0472	0.0094	RP11-448A19.1->chr7:129244389-129251471:-,SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1	NCIH2228_LUNG	0.04	0.67	0.0566	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	MT-ND6--MT-TE	3	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0283	0.0756	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2228_LUNG	0.85	1	0.1039	FALSE	499	1288	110	792	0	FALSE	ACH-000447
NCIH2228_LUNG	DCBLD2--STXBP5L	1	15	DCBLD2	19623	chr3:98526925:-	STXBP5L	56018	chr3:121097563:+	ONLY_REF_SPLICE	YES	401	0	0.04	1	0.0094	0.1417	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,STXBP5L->chr3:120626919-121143608:+,syntaxin_binding_protein_5_like	NCIH2228_LUNG	0.04	1	0.1511	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	EIF1--FTH1	4	3	EIF1	1112	chr17:39845248:+	FTH1	7999	chr11:61734918:-	INCL_NON_REF_SPLICE	YES	104	454	0.06	0.02	0.0378	0.0283	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	NCIH2228_LUNG	0.02	0.06	0.0661	TRUE	0	0	0	2	0	FALSE	ACH-000447
NCIH2228_LUNG	MT-TA--MT-TC	4	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2228_LUNG	1	1	0.0472	FALSE	462	80	0	856	0	FALSE	ACH-000447
NCIH2228_LUNG	MT-ND1--MT-TL1	4	0	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH2228_LUNG	1	1	0.0378	FALSE	210	95	5	49	0	FALSE	ACH-000447
NCIH2228_LUNG	KATNAL1--ZC3H13	3	3	KATNAL1	1725	chr13:30880897:-	ZC3H13	32024	chr13:46563232:-	INCL_NON_REF_SPLICE	YES	6	16	0.5	0.27	0.0283	0.0283	KATNAL1->chr13:30776767-30881621:-,katanin_catalytic_subunit_A1_like_1,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	NCIH2228_LUNG	0.27	0.5	0.0566	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	FTH1--ACTB	3	2	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	566	0	0.01	1	0.0283	0.0189	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH2228_LUNG	0.01	1	0.0472	FALSE	1	0	0	97	0	FALSE	ACH-000447
NCIH2228_LUNG	MT-ND6--MT-TE	3	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0.0189	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2228_LUNG	1	1	0.0472	FALSE	499	1288	110	792	0	FALSE	ACH-000447
NCIH2228_LUNG	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0.0189	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2228_LUNG	1	1	0.0472	FALSE	462	80	0	856	0	FALSE	ACH-000447
NCIH2228_LUNG	RP11-448A19.1--SND1	3	2	RP11-448A19.1	1313	chr7:129251159:-	SND1	17043	chr7:127334882:+	INCL_NON_REF_SPLICE	YES	5	141	0.5	0.03	0.0283	0.0189	RP11-448A19.1->chr7:129244389-129251471:-,SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1	NCIH2228_LUNG	0.03	0.5	0.0472	TRUE	0	0	0	1	0	FALSE	ACH-000447
NCIH2228_LUNG	PTPN3--ALK	3	1	PTPN3	2247	chr9:112225577:-	ALK	53099	chr2:29498362:-	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0283	0.0094	PTPN3->chr9:112137746-112260590:-,protein_tyrosine_phosphatase,_non-receptor_type_3,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	NCIH2228_LUNG	0.18	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	69	1	0.05	0.0283	0.0094	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2228_LUNG	0.05	1	0.0377	FALSE	16	356	14	466	0	FALSE	ACH-000447
NCIH2228_LUNG	FTL--RPL39	3	0	FTL	1104	chr19:49468661:+	RPL39	5600	chrX:118925585:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	NCIH2228_LUNG	1	1	0.0283	TRUE	0	0	0	3	0	TRUE	ACH-000447
NCIH2228_LUNG	FTL--RPL39	3	0	FTL	1116	chr19:49468673:+	RPL39	5614	chrX:118925571:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	NCIH2228_LUNG	1	1	0.0283	TRUE	0	0	0	3	0	TRUE	ACH-000447
NCIH2228_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2228_LUNG	1	1	0.0283	FALSE	499	1288	110	792	0	FALSE	ACH-000447
NCIH2228_LUNG	NRIP1--AF127936.7	3	0	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2228_LUNG	1	1	0.0283	FALSE	8	57	1	47	0	FALSE	ACH-000447
NCIH2228_LUNG	RTN4--MT-CO3	3	0	RTN4	5915	chr2:55277526:-	MT-CO3	22790	chrM:9278:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH2228_LUNG	1	1	0.0283	FALSE	0	0	0	3	0	FALSE	ACH-000447
NCIH2228_LUNG	SLC7A5--RPL39	3	0	SLC7A5	8058	chr16:87871484:-	RPL39	17596	chrX:118925591:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	NCIH2228_LUNG	1	1	0.0283	TRUE	0	0	0	5	0	TRUE	ACH-000447
NCIH2228_LUNG	XPA--RP11-15J10.8	3	0	XPA	8431	chr9:100437776:-	RP11-15J10.8	15534	chr9:70114081:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	XPA->Oncogene{Bushman},chr9:100437191-100459639:-,xeroderma_pigmentosum,_complementation_group_A,RP11-15J10.8->chr9:70113593-70124467:-	NCIH2228_LUNG	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	CCDC122--FOXN2	2	0	CCDC122	2147	chr13:44448978:-	FOXN2	18270	chr2:48573340:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,FOXN2->chr2:48541776-48606433:+,forkhead_box_N2	NCIH2228_LUNG	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	CPSF6--CHMP1A	2	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH2228_LUNG	1	1	0.0189	TRUE	95	74	6	34	0	FALSE	ACH-000447
NCIH2228_LUNG	CTNNA1--MATR3	2	0	CTNNA1	17161	chr5:138163407:+	MATR3	58734	chr5:138650364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx&tcga_normals:1/3694=0.03%,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,MATR3->chr5:138609441-138667360:+,matrin_3	NCIH2228_LUNG	1	1	0.0189	TRUE	0	0	0	6	0	TRUE	ACH-000447
NCIH2228_LUNG	RP11-114H23.1--RP11-114H23.2	2	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH2228_LUNG	1	1	0.0189	FALSE	81	155	12	160	0	FALSE	ACH-000447
NCIH2228_LUNG	KATNAL1--ZC3H13	1	3	KATNAL1	1772	chr13:30880850:-	ZC3H13	32024	chr13:46563232:-	ONLY_REF_SPLICE	YES	6	16	0.4	0.2	0.0094	0.0283	KATNAL1->chr13:30776767-30881621:-,katanin_catalytic_subunit_A1_like_1,ZC3H13->chr13:46528600-46626894:-,zinc_finger_CCCH-type_containing_13	NCIH2228_LUNG	0.2	0.4	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	PTCH1--LUC7L2	1	3	PTCH1	4844	chr9:98268689:-	LUC7L2	44202	chr7:139083345:+	ONLY_REF_SPLICE	YES	1	31	0.8	0.11	0.0094	0.0283	{Klijn_CCL:Lung=1},PTCH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:98205262-98279339:-,patched_1,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	NCIH2228_LUNG	0.11	0.8	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000447
NCIH2228_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	1	1	0.8	0.0094	0.0283	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2228_LUNG	0.8	1	0.0377	FALSE	467	2173	244	435	0	FALSE	ACH-000447
NCIH2228_LUNG	COX7A2L--MAP4K3	1	1	COX7A2L	8717	chr2:42588230:-	MAP4K3	30949	chr2:39542529:-	ONLY_REF_SPLICE	YES	223	26	0.01	0.07	0.0094	0.0094	COX7A2L->chr2:42560686-42652228:-,cytochrome_c_oxidase_subunit_7A2_like,MAP4K3->chr2:39476407-39664453:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_3	NCIH2228_LUNG	0.01	0.07	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000447
NCIH2228_LUNG	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0094	0.0094	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2228_LUNG	1	1	0.0188	FALSE	292	1546	117	613	0	FALSE	ACH-000447
NCIH2228_LUNG	POLE4--RP11-355F16.1	1	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	188	0	0.01	1	0.0094	0.0094	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	NCIH2228_LUNG	0.01	1	0.0188	FALSE	5	7	0	37	0	FALSE	ACH-000447
NCIH2228_LUNG	RP11-1L12.3--SLC5A12	1	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	14042	chr11:26737901:-	ONLY_REF_SPLICE	YES	11	0	0.15	1	0.0094	0.0094	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	NCIH2228_LUNG	0.15	1	0.0188	TRUE	0	4	0	4	3	FALSE	ACH-000447
HS852T_SKIN	C7orf50--FKBP9L	467	80	C7orf50	6340	chr7:1067894:-	FKBP9L	22188	chr7:55759193:-	ONLY_REF_SPLICE	YES	310	13	0.64	0.98	5.7885	0.9916	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,FKBP9L->chr7:55748767-55780945:-	HS852T_SKIN	0.64	0.98	6.7801	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	TMEM135--CCDC81	298	186	TMEM135	9064	chr11:86947726:+	CCDC81	38632	chr11:86125831:+	ONLY_REF_SPLICE	YES	78	40	0.86	0.92	3.6937	2.3055	{Klijn_CCL:Skin=1},TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81	HS852T_SKIN	0.86	0.92	5.9992	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ARRB1--SLCO2B1	288	48	ARRB1	1242	chr11:75062632:-	SLCO2B1	32881	chr11:74873700:+	ONLY_REF_SPLICE	YES	29	15	0.92	0.96	3.5698	0.595	LOCAL_INVERSION:-:+:[57632],ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1	HS852T_SKIN	0.92	0.96	4.1648	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	PRKRIR--SLCO2B1	265	100	PRKRIR	1224	chr11:76091792:-	SLCO2B1	23746	chr11:74873700:+	ONLY_REF_SPLICE	YES	522	15	0.41	0.96	3.2847	1.2395	PRKRIR->chr11:76061000-76092015:-,SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1	HS852T_SKIN	0.41	0.96	4.5242	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	WI2-1896O14.1--RP11-353N4.1	212	55	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	2.6277	0.6817	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	HS852T_SKIN	1	1	3.3094	TRUE	361	258	24	38	0	FALSE	ACH-000274
HS852T_SKIN	NRP1--RP11-79C23.1	160	39	NRP1	4012	chr10:33619636:-	RP11-79C23.1	38302	chr15:20087530:+	ONLY_REF_SPLICE	YES	87	12	0.7	0.94	1.9832	0.4834	NRP1->chr10:33466420-33625190:-,neuropilin_1,RP11-79C23.1->chr15:20083769-20093074:+	HS852T_SKIN	0.7	0.94	2.4666	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	TMEM60--MAGI2	133	29	TMEM60	1327	chr7:77427571:-	MAGI2	22831	chr7:77830510:-	ONLY_REF_SPLICE	YES	40	3	0.8	0.98	1.6485	0.3595	TMEM60->chr7:77423045-77427897:-,transmembrane_protein_60,MAGI2->ArcherDX_panel,FoundationOne_panel,chr7:77646393-79082890:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_2	HS852T_SKIN	0.8	0.98	2.008	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	KLHL7--TPCN2	119	27	KLHL7	1413	chr7:23145765:+	TPCN2	27419	chr11:68830352:+	ONLY_REF_SPLICE	YES	61	264	0.71	0.36	1.475	0.3347	{Klijn_CCL:Skin=1},KLHL7->chr7:23145353-23217533:+,kelch_like_family_member_7,TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2	HS852T_SKIN	0.36	0.71	1.8097	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	TIMM23B--LINC00843	90	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1156	0.1983	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS852T_SKIN	0.99	1	1.3139	TRUE	508	994	45	981	0	FALSE	ACH-000274
HS852T_SKIN	PPP6R3--C11orf30	88	17	PPP6R3	1110	chr11:68228295:+	C11orf30	40581	chr11:76157944:+	ONLY_REF_SPLICE	YES	2	146	0.98	0.42	1.0908	0.2107	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	HS852T_SKIN	0.42	0.98	1.3015	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	UVRAG--MYEOV	72	29	UVRAG	1358	chr11:75526569:+	MYEOV	38850	chr11:69156278:+	ONLY_REF_SPLICE	YES	498	648	0.17	0.13	0.8924	0.3595	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed	HS852T_SKIN	0.13	0.17	1.2519	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ITGA1--RP11-160H12.2	74	15	ITGA1	4538	chr5:52145319:+	RP11-160H12.2	61633	chr11:83436235:+	ONLY_REF_SPLICE	YES	25	2	0.78	0.98	0.9172	0.1859	ITGA1->chr5:52083730-52255040:+,integrin_subunit_alpha_1,RP11-160H12.2->chr11:83354645-83436433:+	HS852T_SKIN	0.78	0.98	1.1031	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	NRP1--RP11-79C23.1	58	69	NRP1	4012	chr10:33619636:-	RP11-79C23.1	35775	chr15:20083807:+	INCL_NON_REF_SPLICE	YES	87	0	0.59	1	0.7189	0.8553	NRP1->chr10:33466420-33625190:-,neuropilin_1,RP11-79C23.1->chr15:20083769-20093074:+	HS852T_SKIN	0.59	1	1.5742	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	NF1--AC084809.2	65	35	NF1	1443	chr17:29422387:+	AC084809.2	78700	chr17:31204862:+	ONLY_REF_SPLICE	YES	9	0	0.92	1	0.8057	0.4338	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,AC084809.2->chr17:31203777-31205655:+	HS852T_SKIN	0.92	1	1.2395	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	PPP6R3--CTD-2013M15.1	65	7	PPP6R3	1110	chr11:68228295:+	CTD-2013M15.1	40801	chr5:45895936:+	ONLY_REF_SPLICE	YES	2	0	0.97	1	0.8057	0.0868	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,CTD-2013M15.1->chr5:45890318-45896072:+	HS852T_SKIN	0.97	1	0.8925	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	C7orf50--FKBP9L	38	87	C7orf50	7633	chr7:1066371:-	FKBP9L	22188	chr7:55759193:-	INCL_NON_REF_SPLICE	YES	542	13	0.19	0.91	0.471	1.0784	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,FKBP9L->chr7:55748767-55780945:-	HS852T_SKIN	0.19	0.91	1.5494	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ARRB1--SLCO2B1	53	21	ARRB1	1242	chr11:75062632:-	SLCO2B1	35288	chr11:74876832:+	ONLY_REF_SPLICE	YES	29	261	0.72	0.22	0.6569	0.2603	LOCAL_INVERSION:-:+:[57632],ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1	HS852T_SKIN	0.22	0.72	0.9172	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	MGA--NIPA1	57	3	MGA	1366	chr15:41913787:+	NIPA1	44706	chr15:23062319:-	ONLY_REF_SPLICE	YES	1	16	0.98	0.79	0.7065	0.0372	MGA->MGA,_MAX_dimerization_protein,chr15:41913422-42062141:+,NIPA1->chr15:23043277-23100005:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_1	HS852T_SKIN	0.79	0.98	0.7437	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	TIMM23--RP11-464F9.1	53	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	287	2	0.17	0.97	0.6569	0.062	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS852T_SKIN	0.17	0.97	0.7189	TRUE	519	3926	326	965	0	FALSE	ACH-000274
HS852T_SKIN	TMEM135--CCDC81	6	187	TMEM135	9064	chr11:86947726:+	CCDC81	38171	chr11:86125370:+	INCL_NON_REF_SPLICE	YES	78	1	0.71	0.99	0.0744	2.3179	{Klijn_CCL:Skin=1},TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81	HS852T_SKIN	0.71	0.99	2.3923	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	DTX2P1--PRKRIP1	44	4	DTX2P1	11762	chr7:76641336:+	PRKRIP1	25356	chr7:102016270:+	ONLY_REF_SPLICE	YES	3	19	0.94	0.72	0.5454	0.0496	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	HS852T_SKIN	0.72	0.94	0.595	TRUE	0	0	0	3	0	TRUE	ACH-000274
HS852T_SKIN	PIGG--CHRDL2	37	29	PIGG	7006	chr4:501382:+	CHRDL2	31598	chr11:74424524:-	ONLY_REF_SPLICE	YES	65	0	0.5	1	0.4586	0.3595	{Klijn_CCL:Skin=1},PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	HS852T_SKIN	0.5	1	0.8181	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	FGF19--KLHL7	40	11	FGF19	2382	chr11:69518029:-	KLHL7	10920	chr7:23163396:+	ONLY_REF_SPLICE	YES	2	72	0.96	0.41	0.4958	0.1363	{Klijn_CCL:Skin=1},FGF19->ArcherDX_panel,FoundationOne_panel,chr11:69513000-69519410:-,fibroblast_growth_factor_19,KLHL7->chr7:23145353-23217533:+,kelch_like_family_member_7	HS852T_SKIN	0.41	0.96	0.6321	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ZNF654--HMGB2	40	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4958	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HS852T_SKIN	1	1	0.4958	TRUE	0	0	0	518	0	FALSE	ACH-000274
HS852T_SKIN	PPP6R3--RP11-111M22.2	34	10	PPP6R3	1110	chr11:68228295:+	RP11-111M22.2	49929	chr11:76121906:+	ONLY_REF_SPLICE	YES	2	7	0.96	0.86	0.4214	0.124	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,RP11-111M22.2->chr11:76092357-76125663:+	HS852T_SKIN	0.86	0.96	0.5454	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	RNF169--SLCO2B1	28	3	RNF169	1515	chr11:74460427:+	SLCO2B1	22612	chr11:74873700:+	ONLY_REF_SPLICE	YES	0	15	1	0.67	0.3471	0.0372	RNF169->chr11:74459913-74553458:+,ring_finger_protein_169,SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1	HS852T_SKIN	0.67	1	0.3843	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	PIGG--CHRDL2	12	39	PIGG	8148	chr4:502759:+	CHRDL2	31598	chr11:74424524:-	ONLY_REF_SPLICE	YES	28	0	0.65	1	0.1487	0.4834	{Klijn_CCL:Skin=1},PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	HS852T_SKIN	0.65	1	0.6321	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	PRKRIR--SLCO2B1	20	7	PRKRIR	1224	chr11:76091792:-	SLCO2B1	29148	chr11:74883424:+	ONLY_REF_SPLICE	YES	522	378	0.05	0.07	0.2479	0.0868	PRKRIR->chr11:76061000-76092015:-,SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1	HS852T_SKIN	0.05	0.07	0.3347	TRUE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	TBC1D1--DGKB	19	5	TBC1D1	24734	chr4:38097711:+	DGKB	65716	chr7:14517850:-	ONLY_REF_SPLICE	YES	132	0	0.15	1	0.2355	0.062	TBC1D1->TBC1_domain_family_member_1,chr4:37892708-38140796:+,DGKB->chr7:14184674-15014402:-,diacylglycerol_kinase_beta	HS852T_SKIN	0.15	1	0.2975	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	MGA--NIPA1	18	3	MGA	1075	chr15:41913496:+	NIPA1	44706	chr15:23062319:-	ONLY_REF_SPLICE	YES	0	16	1	0.57	0.2231	0.0372	MGA->MGA,_MAX_dimerization_protein,chr15:41913422-42062141:+,NIPA1->chr15:23043277-23100005:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_1	HS852T_SKIN	0.57	1	0.2603	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	C15orf57--CBX3	17	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	58	167	0.28	0.12	0.2107	0.062	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS852T_SKIN	0.12	0.28	0.2727	TRUE	267	562	48	632	0	FALSE	ACH-000274
HS852T_SKIN	PIGG--CHRDL2	9	36	PIGG	8099	chr4:502710:+	CHRDL2	31598	chr11:74424524:-	INCL_NON_REF_SPLICE	YES	33	0	0.58	1	0.1116	0.4462	{Klijn_CCL:Skin=1},PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	HS852T_SKIN	0.58	1	0.5578	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	GPSM2--CSF1	15	11	GPSM2	16836	chr1:109472597:+	CSF1	29585	chr1:110464469:+	INCL_NON_REF_SPLICE	YES	44	144	0.37	0.15	0.1859	0.1363	GPSM2->G-protein_signaling_modulator_2,chr1:109417972-109477167:+,CSF1->Oncogene{Bushman},chr1:110452864-110473614:+,colony_stimulating_factor_1	HS852T_SKIN	0.15	0.37	0.3222	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	RP11-111M22.2--TPCN2	15	8	RP11-111M22.2	1981	chr11:76093337:+	TPCN2	21843	chr11:68825046:+	ONLY_REF_SPLICE	YES	122	274	0.16	0.08	0.1859	0.0992	RP11-111M22.2->chr11:76092357-76125663:+,TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2	HS852T_SKIN	0.08	0.16	0.2851	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	MAF--RP11-679B19.2	15	5	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1859	0.062	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	HS852T_SKIN	1	1	0.2479	TRUE	48	25	3	38	0	FALSE	ACH-000274
HS852T_SKIN	NRP1--RP11-79C23.1	2	53	NRP1	4012	chr10:33619636:-	RP11-79C23.1	36052	chr15:20084084:+	ONLY_REF_SPLICE	NO	87	9	0.39	0.86	0.0248	0.6569	NRP1->chr10:33466420-33625190:-,neuropilin_1,RP11-79C23.1->chr15:20083769-20093074:+	HS852T_SKIN	0.39	0.86	0.6817	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ITGA1--RP11-160H12.2	10	19	ITGA1	4538	chr5:52145319:+	RP11-160H12.2	60477	chr11:83431873:+	ONLY_REF_SPLICE	YES	25	0	0.54	1	0.124	0.2355	ITGA1->chr5:52083730-52255040:+,integrin_subunit_alpha_1,RP11-160H12.2->chr11:83354645-83436433:+	HS852T_SKIN	0.54	1	0.3595	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	NF1--AC084809.3	13	6	NF1	1443	chr17:29422387:+	AC084809.3	78144	chr17:31233209:+	ONLY_REF_SPLICE	YES	9	0	0.68	1	0.1611	0.0744	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,AC084809.3->chr17:31232680-31233602:+	HS852T_SKIN	0.68	1	0.2355	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	NIPA1--RAD51	13	5	NIPA1	4187	chr15:23086234:-	RAD51	22435	chr15:40990955:+	ONLY_REF_SPLICE	YES	16	16	0.53	0.53	0.1611	0.062	NIPA1->chr15:23043277-23100005:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_1,RAD51->ArcherDX_panel,FoundationOne_panel,RAD51_recombinase,chr15:40986972-41024354:+	HS852T_SKIN	0.53	0.53	0.2231	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	PRKRIR--SLCO2B1	7	28	PRKRIR	1224	chr11:76091792:-	SLCO2B1	26153	chr11:74876832:+	ONLY_REF_SPLICE	YES	522	261	0.06	0.12	0.0868	0.3471	PRKRIR->chr11:76061000-76092015:-,SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1	HS852T_SKIN	0.06	0.12	0.4339	TRUE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	PIGG--CHRDL2	8	23	PIGG	8148	chr4:502759:+	CHRDL2	32692	chr11:74422036:-	ONLY_REF_SPLICE	YES	28	2	0.53	0.94	0.0992	0.2851	{Klijn_CCL:Skin=1},PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	HS852T_SKIN	0.53	0.94	0.3843	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	FAM69A--EVI5	11	5	FAM69A	3368	chr1:93316405:-	EVI5	33321	chr1:92979527:-	ONLY_REF_SPLICE	YES	15	14	0.52	0.53	0.1363	0.062	NEIGHBORS[49763],FAM69A->chr1:93307724-93427057:-,family_with_sequence_similarity_69_member_A,EVI5->chr1:92974253-93257961:-,ecotropic_viral_integration_site_5	HS852T_SKIN	0.52	0.53	0.1983	FALSE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	GRK4--FZD4	12	0	GRK4	1515	chr4:2965849:+	FZD4	26980	chr11:86666049:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1487	0	GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+,FZD4->chr11:86656721-86666433:-,frizzled_class_receptor_4	HS852T_SKIN	1	1	0.1487	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	KLHL7--TPCN2	5	28	KLHL7	2061	chr7:23146413:+	TPCN2	27419	chr11:68830352:+	ONLY_REF_SPLICE	YES	87	264	0.28	0.11	0.062	0.3471	{Klijn_CCL:Skin=1},KLHL7->chr7:23145353-23217533:+,kelch_like_family_member_7,TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2	HS852T_SKIN	0.11	0.28	0.4091	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	NRP1--RP11-79C23.1	1	42	NRP1	4012	chr10:33619636:-	RP11-79C23.1	37226	chr15:20086454:+	ONLY_REF_SPLICE	YES	87	16	0.33	0.73	0.0124	0.5206	NRP1->chr10:33466420-33625190:-,neuropilin_1,RP11-79C23.1->chr15:20083769-20093074:+	HS852T_SKIN	0.33	0.73	0.533	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	RP4-565E6.1--HYDIN	10	5	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.124	0.062	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS852T_SKIN	0.94	1	0.186	TRUE	456	1387	91	133	0	FALSE	ACH-000274
HS852T_SKIN	ITGA1--RP11-160H12.2	6	20	ITGA1	4538	chr5:52145319:+	RP11-160H12.2	58595	chr11:83403972:+	ONLY_REF_SPLICE	YES	25	0	0.51	1	0.0744	0.2479	ITGA1->chr5:52083730-52255040:+,integrin_subunit_alpha_1,RP11-160H12.2->chr11:83354645-83436433:+	HS852T_SKIN	0.51	1	0.3223	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	TPM1--CD74	11	0	TPM1	2483	chr15:63336313:+	CD74	21379	chr5:149792303:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1363	0	TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha),CD74->CD74_molecule,Oncogene{Bushman},chr5:149781200-149792492:-	HS852T_SKIN	1	1	0.1363	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	RP11-111M22.2--GAB2	10	1	RP11-111M22.2	1981	chr11:76093337:+	GAB2	23302	chr11:77991947:-	ONLY_REF_SPLICE	YES	122	26	0.08	0.3	0.124	0.0124	RP11-111M22.2->chr11:76092357-76125663:+,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	HS852T_SKIN	0.08	0.3	0.1364	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	C15orf57--CBX3	9	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	57	168	0.19	0.07	0.1116	0.0496	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS852T_SKIN	0.07	0.19	0.1612	TRUE	267	562	48	632	0	FALSE	ACH-000274
HS852T_SKIN	ERC1--ADIPOR2	8	5	ERC1	25153	chr12:1372331:+	ADIPOR2	49568	chr12:1863424:+	ONLY_REF_SPLICE	YES	16	36	0.45	0.27	0.0992	0.062	ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	HS852T_SKIN	0.27	0.45	0.1612	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	GDPD5--CCM2	8	5	GDPD5	30969	chr11:75147981:-	CCM2	45262	chr7:45108042:+	ONLY_REF_SPLICE	YES	126	84	0.09	0.13	0.0992	0.062	GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5,CCM2->CCM2_scaffolding_protein,chr7:45039074-45116068:+	HS852T_SKIN	0.09	0.13	0.1612	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	PRKRIR--SLCO2B1	6	13	PRKRIR	1224	chr11:76091792:-	SLCO2B1	27316	chr11:74880218:+	ONLY_REF_SPLICE	YES	522	328	0.04	0.05	0.0744	0.1611	PRKRIR->chr11:76061000-76092015:-,SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1	HS852T_SKIN	0.04	0.05	0.2355	TRUE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	ITGA1--RP11-160H12.2	4	20	ITGA1	4538	chr5:52145319:+	RP11-160H12.2	56610	chr11:83395492:+	ONLY_REF_SPLICE	YES	25	0	0.49	1	0.0496	0.2479	ITGA1->chr5:52083730-52255040:+,integrin_subunit_alpha_1,RP11-160H12.2->chr11:83354645-83436433:+	HS852T_SKIN	0.49	1	0.2975	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	SNX10--EVX1	8	2	SNX10	1166	chr7:26331706:+	EVX1	18783	chr7:27284667:+	ONLY_REF_SPLICE	YES	178	0	0.05	1	0.0992	0.0248	SNX10->chr7:26331541-26413949:+,sorting_nexin_10,EVX1->chr7:27282164-27290112:+,even-skipped_homeobox_1	HS852T_SKIN	0.05	1	0.124	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	SNX10--HOTTIP	8	2	SNX10	1166	chr7:26331706:+	HOTTIP	20858	chr7:27244331:+	ONLY_REF_SPLICE	YES	178	1	0.05	0.91	0.0992	0.0248	SNX10->chr7:26331541-26413949:+,sorting_nexin_10,HOTTIP->HOXA_distal_transcript_antisense_RNA,chr7:27238194-27246878:+	HS852T_SKIN	0.05	0.91	0.124	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	TMEM135--CCDC81	4	18	TMEM135	9064	chr11:86947726:+	CCDC81	41009	chr11:86130970:+	ONLY_REF_SPLICE	YES	78	629	0.22	0.03	0.0496	0.2231	{Klijn_CCL:Skin=1},TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81	HS852T_SKIN	0.03	0.22	0.2727	TRUE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	SNX13--PHF14	6	8	SNX13	38502	chr7:17833875:-	PHF14	50000	chr7:11053374:+	INCL_NON_REF_SPLICE	YES	98	56	0.12	0.2	0.0744	0.0992	SNX13->chr7:17830385-17980124:-,sorting_nexin_13,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HS852T_SKIN	0.12	0.2	0.1736	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ZFR--GOLPH3	6	6	ZFR	7668	chr5:32404011:-	GOLPH3	30050	chr5:32135792:-	ONLY_REF_SPLICE	YES	232	269	0.05	0.04	0.0744	0.0744	ZFR->chr5:32354456-32444867:-,zinc_finger_RNA_binding_protein,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	HS852T_SKIN	0.04	0.05	0.1488	TRUE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	PHF14--TWIST1	7	1	PHF14	25633	chr7:11151094:+	TWIST1	34924	chr7:19095788:-	ONLY_REF_SPLICE	YES	30	1	0.21	0.89	0.0868	0.0124	PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+,TWIST1->Oncogene{Bushman},chr7:19060614-19157295:-,twist_family_bHLH_transcription_factor_1	HS852T_SKIN	0.21	0.89	0.0992	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	PIGG--CHRDL2	6	5	PIGG	2402	chr4:494390:+	CHRDL2	31598	chr11:74424524:-	ONLY_REF_SPLICE	YES	104	0	0.1	1	0.0744	0.062	{Klijn_CCL:Skin=1},PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	HS852T_SKIN	0.1	1	0.1364	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ITGA1--RP11-160H12.2	2	20	ITGA1	4538	chr5:52145319:+	RP11-160H12.2	57687	chr11:83403064:+	ONLY_REF_SPLICE	YES	25	0	0.47	1	0.0248	0.2479	ITGA1->chr5:52083730-52255040:+,integrin_subunit_alpha_1,RP11-160H12.2->chr11:83354645-83436433:+	HS852T_SKIN	0.47	1	0.2727	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	RP11-444D3.1--SOX5	6	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	5	1	0.67	0.0744	0.0496	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS852T_SKIN	0.67	1	0.124	TRUE	477	1352	189	275	0	FALSE	ACH-000274
HS852T_SKIN	TPCN2--GAB2	7	0	TPCN2	4647	chr11:68825162:+	GAB2	30365	chr11:77991947:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0868	0	TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	HS852T_SKIN	1	1	0.0868	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	NRIP1--AF127936.7	6	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0744	0.0248	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS852T_SKIN	1	1	0.0992	FALSE	292	1546	117	613	0	FALSE	ACH-000274
HS852T_SKIN	GRK4--ACER3	6	1	GRK4	1515	chr4:2965849:+	ACER3	36863	chr11:76709807:+	ONLY_REF_SPLICE	YES	52	121	0.12	0.05	0.0744	0.0124	GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+,ACER3->alkaline_ceramidase_3,chr11:76571911-76737841:+	HS852T_SKIN	0.05	0.12	0.0868	TRUE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	ZFR--GOLPH3	4	9	ZFR	8468	chr5:32403211:-	GOLPH3	30050	chr5:32135792:-	ONLY_REF_SPLICE	YES	194	269	0.06	0.05	0.0496	0.1116	ZFR->chr5:32354456-32444867:-,zinc_finger_RNA_binding_protein,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	HS852T_SKIN	0.05	0.06	0.1612	TRUE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	PPP6R3--RP11-111M22.2	2	14	PPP6R3	1110	chr11:68228295:+	RP11-111M22.2	48783	chr11:76119521:+	ONLY_REF_SPLICE	YES	2	1	0.89	0.94	0.0248	0.1735	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,RP11-111M22.2->chr11:76092357-76125663:+	HS852T_SKIN	0.89	0.94	0.1983	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	JSRP1--RPS28	5	1	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.062	0.0124	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HS852T_SKIN	0.86	1	0.0744	TRUE	0	1	0	84	1	FALSE	ACH-000274
HS852T_SKIN	EEF2--RPS28	5	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.062	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HS852T_SKIN	1	1	0.062	TRUE	0	0	0	100	0	FALSE	ACH-000274
HS852T_SKIN	CCDC81--ISL1	4	2	CCDC81	3726	chr11:86098714:+	ISL1	28643	chr5:50689328:+	ONLY_REF_SPLICE	YES	0	14	1	0.3	0.0496	0.0248	CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81,ISL1->ISL_LIM_homeobox_1,chr5:50678921-50690564:+	HS852T_SKIN	0.3	1	0.0744	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	BMPER--TBRG4	4	1	BMPER	9772	chr7:34014396:+	TBRG4	36318	chr7:45143042:-	ONLY_REF_SPLICE	YES	1	106	0.83	0.05	0.0496	0.0124	BMPER->BMP_binding_endothelial_regulator,chr7:33944523-34195484:+,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	HS852T_SKIN	0.05	0.83	0.062	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	CTBP1--FKBP9L	4	1	CTBP1	19731	chr4:1206701:-	FKBP9L	31987	chr7:55755617:-	ONLY_REF_SPLICE	YES	730	28	0.01	0.15	0.0496	0.0124	CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-,FKBP9L->chr7:55748767-55780945:-	HS852T_SKIN	0.01	0.15	0.062	FALSE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	ACER3--RP11-736K20.5	4	0	ACER3	11326	chr11:76709865:+	RP11-736K20.5	27053	chr11:86633140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0496	0	ACER3->alkaline_ceramidase_3,chr11:76571911-76737841:+,RP11-736K20.5->chr11:86603256-86636079:-	HS852T_SKIN	1	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	NF1--AC084809.2	1	12	NF1	1443	chr17:29422387:+	AC084809.2	79156	chr17:31205318:+	ONLY_REF_SPLICE	YES	9	9	0.59	0.59	0.0124	0.1487	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,AC084809.2->chr17:31203777-31205655:+	HS852T_SKIN	0.59	0.59	0.1611	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	RP11-111M22.2--TPCN2	3	4	RP11-111M22.2	1981	chr11:76093337:+	TPCN2	22960	chr11:68830352:+	ONLY_REF_SPLICE	YES	122	264	0.05	0.03	0.0372	0.0496	RP11-111M22.2->chr11:76092357-76125663:+,TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2	HS852T_SKIN	0.03	0.05	0.0868	TRUE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	RP11-111M22.2--TPCN2	4	0	RP11-111M22.2	1062	chr11:76092418:+	TPCN2	21843	chr11:68825046:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0496	0	RP11-111M22.2->chr11:76092357-76125663:+,TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2	HS852T_SKIN	1	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	RP11-96H19.1--RP11-446N19.1	4	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0496	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS852T_SKIN	1	1	0.0496	FALSE	515	4851	409	746	0	FALSE	ACH-000274
HS852T_SKIN	GRK4--RP11-736K20.5	2	6	GRK4	1515	chr4:2965849:+	RP11-736K20.5	27664	chr11:86633140:-	ONLY_REF_SPLICE	YES	52	0	0.13	1	0.0248	0.0744	GRK4->G_protein-coupled_receptor_kinase_4,chr4:2965335-3042474:+,RP11-736K20.5->chr11:86603256-86636079:-	HS852T_SKIN	0.13	1	0.0992	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	RP11-308N19.1--RP11-308N19.4	3	2	RP11-308N19.1	6003	chr9:109320864:+	RP11-308N19.4	15583	chr9:109427034:+	ONLY_REF_SPLICE	YES	51	0	0.09	1	0.0372	0.0248	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	HS852T_SKIN	0.09	1	0.062	FALSE	0	0	0	4	0	FALSE	ACH-000274
HS852T_SKIN	FKBP9L--RP11-802H3.2	3	1	FKBP9L	6413	chr7:55759007:-	RP11-802H3.2	16908	chr4:33439223:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0372	0.0124	FKBP9L->chr7:55748767-55780945:-,RP11-802H3.2->chr4:33435132-33439499:+	HS852T_SKIN	0.67	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	FKBP9L--RP11-802H3.2	3	1	FKBP9L	6413	chr7:55759007:-	RP11-802H3.2	15827	chr4:33435106:+	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0372	0.0124	FKBP9L->chr7:55748767-55780945:-,RP11-802H3.2->chr4:33435132-33439499:+	HS852T_SKIN	0.67	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ITGA1--RP11-160H12.2	2	5	ITGA1	1519	chr5:52084248:+	RP11-160H12.2	61633	chr11:83436235:+	ONLY_REF_SPLICE	YES	86	2	0.08	0.78	0.0248	0.062	ITGA1->chr5:52083730-52255040:+,integrin_subunit_alpha_1,RP11-160H12.2->chr11:83354645-83436433:+	HS852T_SKIN	0.08	0.78	0.0868	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	ITGA1--RP11-79E3.3	3	1	ITGA1	4538	chr5:52145319:+	RP11-79E3.3	54059	chr4:33949146:-	ONLY_REF_SPLICE	YES	25	0	0.14	1	0.0372	0.0124	ITGA1->chr5:52083730-52255040:+,integrin_subunit_alpha_1,RP11-79E3.3->chr4:33777969-34041515:-	HS852T_SKIN	0.14	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HS852T_SKIN	1	1	0.0372	TRUE	0	42	0	133	42	FALSE	ACH-000274
HS852T_SKIN	ARRB1--SLCO2B1	3	0	ARRB1	1242	chr11:75062632:-	SLCO2B1	39474	chr11:74899181:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	LOCAL_INVERSION:-:+:[57632],ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1	HS852T_SKIN	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HS852T_SKIN	1	1	0.0372	TRUE	0	0	0	434	0	FALSE	ACH-000274
HS852T_SKIN	RP11-308N19.1--RP11-308N19.4	3	0	RP11-308N19.1	6003	chr9:109320864:+	RP11-308N19.4	18874	chr9:109435150:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	HS852T_SKIN	1	1	0.0372	FALSE	0	0	0	3	0	FALSE	ACH-000274
HS852T_SKIN	TUBB4B--FTH1	3	0	TUBB4B	1128	chr9:140135792:+	FTH1	6697	chr11:61734931:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	HS852T_SKIN	1	1	0.0372	TRUE	0	0	0	6	0	TRUE	ACH-000274
HS852T_SKIN	TMEM60--MAGI2	2	3	TMEM60	1327	chr7:77427571:-	MAGI2	28322	chr7:77807419:-	ONLY_REF_SPLICE	YES	40	26	0.11	0.16	0.0248	0.0372	TMEM60->chr7:77423045-77427897:-,transmembrane_protein_60,MAGI2->ArcherDX_panel,FoundationOne_panel,chr7:77646393-79082890:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_2	HS852T_SKIN	0.11	0.16	0.062	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	CCDC81--ISL1	2	2	CCDC81	3713	chr11:86098701:+	ISL1	28643	chr5:50689328:+	ONLY_REF_SPLICE	YES	0	14	1	0.22	0.0248	0.0248	CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81,ISL1->ISL_LIM_homeobox_1,chr5:50678921-50690564:+	HS852T_SKIN	0.22	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	RP11-308N19.1--RP11-308N19.4	2	2	RP11-308N19.1	4891	chr9:109262786:+	RP11-308N19.4	15583	chr9:109427034:+	ONLY_REF_SPLICE	YES	79	0	0.05	1	0.0248	0.0248	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	HS852T_SKIN	0.05	1	0.0496	FALSE	0	0	0	4	0	FALSE	ACH-000274
HS852T_SKIN	RP11-308N19.1--RP11-308N19.4	2	2	RP11-308N19.1	7091	chr9:109350745:+	RP11-308N19.4	13391	chr9:109400440:+	ONLY_REF_SPLICE	YES	42	0	0.09	1	0.0248	0.0248	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	HS852T_SKIN	0.09	1	0.0496	FALSE	0	0	0	2	0	FALSE	ACH-000274
HS852T_SKIN	TMEM135--CCDC81	1	6	TMEM135	9064	chr11:86947726:+	CCDC81	42135	chr11:86133616:+	ONLY_REF_SPLICE	YES	78	521	0.08	0.01	0.0124	0.0744	{Klijn_CCL:Skin=1},TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81	HS852T_SKIN	0.01	0.08	0.0868	FALSE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	ZFR--GOLPH3	2	1	ZFR	1533	chr5:32444335:-	GOLPH3	30050	chr5:32135792:-	ONLY_REF_SPLICE	YES	224	269	0.01	0.01	0.0248	0.0124	ZFR->chr5:32354456-32444867:-,zinc_finger_RNA_binding_protein,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	HS852T_SKIN	0.01	0.01	0.0372	FALSE	0	1	0	1	0	FALSE	ACH-000274
HS852T_SKIN	ARRB1--SLCO2B1	1	4	ARRB1	1242	chr11:75062632:-	SLCO2B1	36451	chr11:74880218:+	ONLY_REF_SPLICE	YES	29	328	0.15	0.02	0.0124	0.0496	LOCAL_INVERSION:-:+:[57632],ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1	HS852T_SKIN	0.02	0.15	0.062	TRUE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	CHIC2--SCFD2	2	0	CHIC2	2860	chr4:54915122:-	SCFD2	14070	chr4:54011749:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	CHIC2->Oncogene{Bushman},chr4:54875956-54930857:-,cysteine_rich_hydrophobic_domain_2,SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2	HS852T_SKIN	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	EPS8--STRAP	2	0	EPS8	3576	chr12:15942095:-	STRAP	37698	chr12:16042862:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	LOCAL_INVERSION:-:+:[62],EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,STRAP->chr12:16035325-16056412:+,serine/threonine_kinase_receptor_associated_protein	HS852T_SKIN	1	1	0.0248	TRUE	0	2	0	2	1	TRUE	ACH-000274
HS852T_SKIN	LIN9--MATR3	2	0	LIN9	4274	chr1:226485420:-	MATR3	39400	chr5:138651765:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	LIN9->chr1:226418850-226497570:-,lin-9_DREAM_MuvB_core_complex_component,MATR3->chr5:138609441-138667360:+,matrin_3	HS852T_SKIN	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HS852T_SKIN	1	1	0.0248	TRUE	3	14	2	43	0	FALSE	ACH-000274
HS852T_SKIN	RP11-252A24.2--SF3B3	2	0	RP11-252A24.2	1176	chr16:74401963:-	SF3B3	42640	chr16:70598968:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	RP11-252A24.2->chr16:74366300-74402138:-,SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3	HS852T_SKIN	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	RP11-444D3.1--BCAT1	2	0	RP11-444D3.1	4602	chr12:24521497:-	BCAT1	21307	chr12:25002883:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	RP11-444D3.1->chr12:24366190-24715524:-,BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-	HS852T_SKIN	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	VPS13D--RHEB	2	0	VPS13D	76595	chr1:12476880:+	RHEB	97822	chr7:151174501:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	VPS13D->chr1:12290124-12572099:+,vacuolar_protein_sorting_13_homolog_D,RHEB->Ras_homolog_enriched_in_brain,chr7:151163098-151217206:-	HS852T_SKIN	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	CAPN5--PGM2L1	1	2	CAPN5	6835	chr11:76804859:+	PGM2L1	25787	chr11:74082862:-	ONLY_REF_SPLICE	YES	36	7	0.08	0.3	0.0124	0.0248	CAPN5->calpain_5,chr11:76777979-76837201:+,PGM2L1->chr11:74041363-74109518:-,phosphoglucomutase_2-like_1	HS852T_SKIN	0.08	0.3	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000274
HS852T_SKIN	GDPD5--CCM2	1	2	GDPD5	30969	chr11:75147981:-	CCM2	49299	chr7:45112325:+	ONLY_REF_SPLICE	YES	126	111	0.02	0.03	0.0124	0.0248	GDPD5->chr11:75145685-75236948:-,glycerophosphodiester_phosphodiesterase_domain_containing_5,CCM2->CCM2_scaffolding_protein,chr7:45039074-45116068:+	HS852T_SKIN	0.02	0.03	0.0372	TRUE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	NRIP1--AF127936.7	1	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.38	1	0.0124	0.0248	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS852T_SKIN	0.38	1	0.0372	FALSE	125	705	46	456	0	FALSE	ACH-000274
HS852T_SKIN	PRKRIR--SLCO2B1	1	2	PRKRIR	1224	chr11:76091792:-	SLCO2B1	30339	chr11:74899181:+	ONLY_REF_SPLICE	YES	522	391	0.01	0.01	0.0124	0.0248	PRKRIR->chr11:76061000-76092015:-,SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1	HS852T_SKIN	0.01	0.01	0.0372	FALSE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	RP11-308N19.1--RP11-308N19.4	1	2	RP11-308N19.1	6003	chr9:109320864:+	RP11-308N19.4	13391	chr9:109400440:+	ONLY_REF_SPLICE	NO	51	0	0.06	1	0.0124	0.0248	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	HS852T_SKIN	0.06	1	0.0372	FALSE	0	0	0	3	0	FALSE	ACH-000274
HS852T_SKIN	RP11-308N19.1--RP11-308N19.4	1	2	RP11-308N19.1	1799	chr9:109041471:+	RP11-308N19.4	15583	chr9:109427034:+	ONLY_REF_SPLICE	NO	43	0	0.07	1	0.0124	0.0248	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	HS852T_SKIN	0.07	1	0.0372	FALSE	1	0	0	2	0	FALSE	ACH-000274
HS852T_SKIN	RP11-308N19.1--RP11-308N19.4	1	2	RP11-308N19.1	7091	chr9:109350745:+	RP11-308N19.4	15583	chr9:109427034:+	ONLY_REF_SPLICE	YES	42	0	0.07	1	0.0124	0.0248	NEIGHBORS[11263],RP11-308N19.1->chr9:109040673-109367076:+,RP11-308N19.4->chr9:109378339-109464943:+	HS852T_SKIN	0.07	1	0.0372	FALSE	2	0	0	5	0	FALSE	ACH-000274
HS852T_SKIN	TBC1D1--DGKB	1	2	TBC1D1	24734	chr4:38097711:+	DGKB	66781	chr7:14385016:-	ONLY_REF_SPLICE	YES	132	0	0.02	1	0.0124	0.0248	TBC1D1->TBC1_domain_family_member_1,chr4:37892708-38140796:+,DGKB->chr7:14184674-15014402:-,diacylglycerol_kinase_beta	HS852T_SKIN	0.02	1	0.0372	TRUE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	ARRB1--SLCO2B1	1	1	ARRB1	1242	chr11:75062632:-	SLCO2B1	38283	chr11:74883424:+	ONLY_REF_SPLICE	YES	29	378	0.06	0.01	0.0124	0.0124	LOCAL_INVERSION:-:+:[57632],ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,SLCO2B1->chr11:74811608-74917594:+,solute_carrier_organic_anion_transporter_family_member_2B1	HS852T_SKIN	0.01	0.06	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	BUD31--MYH16	1	1	BUD31	7674	chr7:99015218:+	MYH16	33446	chr7:98875162:+	ONLY_REF_SPLICE	YES	303	0	0.01	1	0.0124	0.0124	LOCAL_REARRANGEMENT:+:[97511],BUD31->BUD31_homolog,chr7:99006264-99017239:+,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	HS852T_SKIN	0.01	1	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	EXT2--HSD17B12	1	1	EXT2	12956	chr11:44151688:+	HSD17B12	54733	chr11:43876265:+	ONLY_REF_SPLICE	YES	273	382	0.01	0.01	0.0124	0.0124	EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2,HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12	HS852T_SKIN	0.01	0.01	0.0248	FALSE	0	0	0	2	0	FALSE	ACH-000274
HS852T_SKIN	POLE4--RP11-355F16.1	1	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	309	0	0.01	1	0.0124	0.0124	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	HS852T_SKIN	0.01	1	0.0248	FALSE	5	7	0	37	0	FALSE	ACH-000274
HS852T_SKIN	RP11-111M22.2--TPCN2	1	1	RP11-111M22.2	1898	chr11:76093254:+	TPCN2	22960	chr11:68830352:+	ONLY_REF_SPLICE	YES	116	264	0.02	0.01	0.0124	0.0124	RP11-111M22.2->chr11:76092357-76125663:+,TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2	HS852T_SKIN	0.01	0.02	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	8	1	0.2	0.0124	0.0124	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS852T_SKIN	0.2	1	0.0248	TRUE	458	1351	185	561	0	FALSE	ACH-000274
HS852T_SKIN	RP4-565E6.1--HYDIN	1	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0124	0.0124	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS852T_SKIN	0.5	1	0.0248	TRUE	84	87	4	41	0	FALSE	ACH-000274
HS852T_SKIN	SLC25A13--SHFM1	1	1	SLC25A13	4550	chr7:95906508:-	SHFM1	29567	chr7:96324203:-	ONLY_REF_SPLICE	YES	60	1105	0.03	0	0.0124	0.0124	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Spleen=1},SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	HS852T_SKIN	0	0.03	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	STT3B--OSBPL10	1	1	STT3B	6612	chr3:31641951:+	OSBPL10	44899	chr3:31744000:-	ONLY_REF_SPLICE	YES	171	73	0.01	0.03	0.0124	0.0124	LOCAL_INVERSION:+:-:[20270],STT3B->STT3B,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr3:31574130-31679112:+,OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10	HS852T_SKIN	0.01	0.03	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000274
HS852T_SKIN	ZFR--GOLPH3	1	1	ZFR	5181	chr5:32415074:-	GOLPH3	30050	chr5:32135792:-	ONLY_REF_SPLICE	YES	215	269	0.01	0.01	0.0124	0.0124	ZFR->chr5:32354456-32444867:-,zinc_finger_RNA_binding_protein,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	HS852T_SKIN	0.01	0.01	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000274
SF126_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	118	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.4836	0.264	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SF126_CENTRAL_NERVOUS_SYSTEM	0.99	1	1.7476	TRUE	508	994	45	981	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	ADAR--PIK3CD	76	1	ADAR	1145	chr1:154600331:-	PIK3CD	24700	chr1:9770482:+	ONLY_REF_SPLICE	YES	1	2	0.99	0.97	0.9555	0.0126	ADAR->adenosine_deaminase,_RNA-specific,chr1:154554538-154600475:-,PIK3CD->Oncogene{Bushman},chr1:9711790-9789172:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_delta	SF126_CENTRAL_NERVOUS_SYSTEM	0.97	0.99	0.9681	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	62	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	214	1	0.23	0.98	0.7795	0.0377	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SF126_CENTRAL_NERVOUS_SYSTEM	0.23	0.98	0.8172	TRUE	519	3926	326	965	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	47	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5909	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.5909	TRUE	402	216	10	229	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	CNOT1--SLC38A7	34	13	CNOT1	9518	chr16:58619242:-	SLC38A7	52514	chr16:58718082:-	ONLY_REF_SPLICE	YES	94	2	0.33	0.96	0.4275	0.1634	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	SF126_CENTRAL_NERVOUS_SYSTEM	0.33	0.96	0.5909	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	31	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	7	1	0.83	0.3898	0.0503	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SF126_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.4401	TRUE	465	1949	224	605	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	28	5	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	25	53	0.57	0.38	0.352	0.0629	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SF126_CENTRAL_NERVOUS_SYSTEM	0.38	0.57	0.4149	TRUE	181	1564	124	196	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	AHCYL1--KIAA1324	20	11	AHCYL1	6702	chr1:110555621:+	KIAA1324	21518	chr1:109704516:+	ONLY_REF_SPLICE	YES	296	1	0.09	0.97	0.2515	0.1383	AHCYL1->adenosylhomocysteinase_like_1,chr1:110527308-110566357:+,KIAA1324->KIAA1324,chr1:109656301-109749401:+	SF126_CENTRAL_NERVOUS_SYSTEM	0.09	0.97	0.3898	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	18	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.93	0.2263	0.088	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SF126_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.3143	TRUE	458	1351	185	561	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	18	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2263	0.0377	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.264	TRUE	477	1352	189	275	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	17	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2137	0.0377	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.2514	FALSE	462	80	0	856	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	16	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	43	35	0.34	0.39	0.2012	0.0754	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SF126_CENTRAL_NERVOUS_SYSTEM	0.34	0.39	0.2766	TRUE	267	562	48	632	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	11	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	42	36	0.26	0.29	0.1383	0.0503	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SF126_CENTRAL_NERVOUS_SYSTEM	0.26	0.29	0.1886	TRUE	267	562	48	632	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	12	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1509	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.1509	TRUE	0	0	0	518	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	AP000525.9--LA16c-60G3.6	11	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	9	0	0.57	1	0.1383	0.0126	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SF126_CENTRAL_NERVOUS_SYSTEM	0.57	1	0.1509	TRUE	0	42	0	133	42	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	10	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1257	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.1257	FALSE	292	1546	117	613	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	AHCYL1--KIAA1324	7	8	AHCYL1	6702	chr1:110555621:+	KIAA1324	22639	chr1:109707121:+	ONLY_REF_SPLICE	YES	296	2	0.05	0.88	0.088	0.1006	AHCYL1->adenosylhomocysteinase_like_1,chr1:110527308-110566357:+,KIAA1324->KIAA1324,chr1:109656301-109749401:+	SF126_CENTRAL_NERVOUS_SYSTEM	0.05	0.88	0.1886	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	HNRNPA2B1--ACTB	9	0	HNRNPA2B1	1919	chr7:26240231:-	ACTB	20135	chr7:5568099:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1132	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.1132	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	8	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1006	0.0126	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.1132	FALSE	416	2512	207	587	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	6	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.53	1	0.0754	0.0503	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SF126_CENTRAL_NERVOUS_SYSTEM	0.53	1	0.1257	FALSE	164	806	69	479	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	6	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0754	0.0251	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.1005	FALSE	467	2173	244	435	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	PFKL--MT-ND4L	6	0	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0754	0	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0754	FALSE	0	0	0	33	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	5	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.54	1	0.0629	0.0251	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SF126_CENTRAL_NERVOUS_SYSTEM	0.54	1	0.088	FALSE	125	705	46	456	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	CALM3--MT-ND4L	5	0	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0629	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0629	FALSE	1	1	0	107	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	CTB-113P19.1--FTL	5	0	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0629	0	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0629	TRUE	0	2	0	13	2	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	CNOT1--SLC38A7	2	9	CNOT1	9518	chr16:58619242:-	SLC38A7	52609	chr16:58717987:-	ONLY_REF_SPLICE	YES	94	17	0.1	0.39	0.0251	0.1132	LOCAL_REARRANGEMENT:-:[35223],CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,SLC38A7->chr16:58699013-58719008:-,solute_carrier_family_38_member_7	SF126_CENTRAL_NERVOUS_SYSTEM	0.1	0.39	0.1383	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	4	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0503	0.0126	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0629	TRUE	274	363	69	150	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	TFDP2--HDAC8	4	0	TFDP2	4758	chr3:141811903:-	HDAC8	49318	chrX:71571688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0503	0	TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2,HDAC8->chrX:71549366-71792953:-,histone_deacetylase_8	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0.0251	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0628	FALSE	515	4851	409	746	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	ZBTB20--NAALADL2	3	2	ZBTB20	8959	chr3:114619151:-	NAALADL2	60106	chr3:174814580:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0377	0.0251	ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+	SF126_CENTRAL_NERVOUS_SYSTEM	0.71	1	0.0628	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	ADAR--PIK3CD	3	0	ADAR	1046	chr1:154600430:-	PIK3CD	24700	chr1:9770482:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	ADAR->adenosine_deaminase,_RNA-specific,chr1:154554538-154600475:-,PIK3CD->Oncogene{Bushman},chr1:9711790-9789172:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_delta	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	104	0.67	0.04	0.0251	0.0251	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SF126_CENTRAL_NERVOUS_SYSTEM	0.04	0.67	0.0502	FALSE	16	356	14	466	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0.0251	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0502	FALSE	407	2205	196	549	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	RP11-114H23.1--RP11-114H23.2	2	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0.0126	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0377	FALSE	81	155	12	160	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	CDH13--RP11-22H5.2	2	0	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0251	FALSE	14	31	0	36	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	INSR--TPM4	2	0	INSR	25264	chr19:7120631:-	TPM4	37859	chr19:16186857:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	INSR->chr19:7112266-7294045:-,insulin_receptor,TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	1	4	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	22	53	0.19	0.09	0.0126	0.0503	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SF126_CENTRAL_NERVOUS_SYSTEM	0.09	0.19	0.0629	TRUE	105	90	7	93	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	NUDT1--HACE1	2	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0251	TRUE	1	20	0	20	17	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	RB1--CAB39L	2	0	RB1	12822	chr13:48942740:+	CAB39L	48308	chr13:49918374:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,CAB39L->calcium_binding_protein_39_like,chr13:49882786-50018262:-	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	TRNAU1AP--MRPL20	2	0	TRNAU1AP	1653	chr1:28880249:+	MRPL20	18039	chr1:1337981:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	TRNAU1AP->chr1:28879597-28905051:+,tRNA_selenocysteine_1_associated_protein_1,MRPL20->chr1:1337288-1342693:-,mitochondrial_ribosomal_protein_L20	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	XRCC5--RPL37A	2	0	XRCC5	2602	chr2:216974180:+	RPL37A	31413	chr2:217363993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0251	TRUE	1	1	0	8	1	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	RSRC1--ACKR4	1	2	RSRC1	9720	chr3:157921034:+	ACKR4	25878	chr3:132319233:+	ONLY_REF_SPLICE	NO	137	0	0.02	1	0.0126	0.0251	RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,ACKR4->atypical_chemokine_receptor_4,chr3:132316081-132337811:+	SF126_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0377	TRUE	0	0	0	1	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	CAB39L--RB1	1	1	CAB39L	16255	chr13:49913813:-	RB1	43010	chr13:49027129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0126	0.0126	CAB39L->calcium_binding_protein_39_like,chr13:49882786-50018262:-,RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	1	1	COL8A1	12080	chr3:99463865:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	98	122	0.02	0.02	0.0126	0.0126	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	SF126_CENTRAL_NERVOUS_SYSTEM	0.02	0.02	0.0252	FALSE	4	4	0	17	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	37	1	0.05	0.0126	0.0126	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SF126_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.0252	TRUE	347	1186	183	220	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	MATR3--CTNNA1	1	1	MATR3	9772	chr5:138629494:+	CTNNA1	45982	chr5:138145727:+	ONLY_REF_SPLICE	YES	27	536	0.07	0	0.0126	0.0126	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	SF126_CENTRAL_NERVOUS_SYSTEM	0	0.07	0.0252	FALSE	3	14	0	14	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	MATR3--CTNNA1	1	1	MATR3	9772	chr5:138629494:+	CTNNA1	48493	chr5:138160219:+	ONLY_REF_SPLICE	YES	27	522	0.07	0	0.0126	0.0126	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	SF126_CENTRAL_NERVOUS_SYSTEM	0	0.07	0.0252	FALSE	0	1	0	1	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	MB21D2--FGF12	1	1	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	20	0	0.09	1	0.0126	0.0126	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	SF126_CENTRAL_NERVOUS_SYSTEM	0.09	1	0.0252	FALSE	0	17	0	46	0	FALSE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	MIR181A1HG--NAV1	1	1	MIR181A1HG	1204	chr1:198906355:-	NAV1	19118	chr1:201749549:+	ONLY_REF_SPLICE	YES	0	50	1	0.04	0.0126	0.0126	MIR181A1HG->MIR181A1_host_gene,chr1:198776622-198906558:-,NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1	SF126_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	PIK3CA--CD86	1	1	PIK3CA	18893	chr3:178948164:+	CD86	37625	chr3:121838285:+	ONLY_REF_SPLICE	YES	25	0	0.07	1	0.0126	0.0126	PIK3CA->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr3:178865902-178957881:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_alpha,CD86->CD86_molecule,chr3:121774213-121839983:+	SF126_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000609
SF126_CENTRAL_NERVOUS_SYSTEM	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0126	0.0126	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SF126_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	FALSE	5	9	0	20	0	FALSE	ACH-000609
SKOV3_OVARY	LRRFIP1--MLPH	333	135	LRRFIP1	22098	chr2:238664830:+	MLPH	65798	chr2:238462209:+	ONLY_REF_SPLICE	YES	202	7	0.7	0.99	4.7975	1.945	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[72258],LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,MLPH->chr2:238394071-238463961:+,melanophilin	SKOV3_OVARY	0.7	0.99	6.7425	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	PPFIBP1--SMCO2	199	76	PPFIBP1	1935	chr12:27677298:+	SMCO2	50047	chr12:27648613:+	ONLY_REF_SPLICE	YES	46	0	0.86	1	2.867	1.0949	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	SKOV3_OVARY	0.86	1	3.9619	TRUE	0	3	0	3	2	TRUE	ACH-000811
SKOV3_OVARY	MTCH1--RP5-1021I20.1	174	53	MTCH1	1446	chr6:36953629:-	RP5-1021I20.1	15619	chr14:74255730:+	ONLY_REF_SPLICE	YES	173	1	0.57	1	2.5068	0.7636	MTCH1->chr6:36935917-36954074:-,mitochondrial_carrier_1,RP5-1021I20.1->chr14:74254063-74269973:+	SKOV3_OVARY	0.57	1	3.2704	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	UBE2G1--ZZEF1	149	53	UBE2G1	5880	chr17:4210316:-	ZZEF1	72022	chr17:3913051:-	ONLY_REF_SPLICE	YES	0	0	1	1	2.1467	0.7636	{Klijn_CCL:Ovary=1,Lymphoid=1},UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1	SKOV3_OVARY	1	1	2.9103	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	SPINT1--HIF1A	96	56	SPINT1	2012	chr15:41137227:+	HIF1A	28300	chr14:62213652:+	ONLY_REF_SPLICE	YES	35	1162	0.81	0.12	1.3831	0.8068	{Klijn_CCL:Ovary=1},SPINT1->Oncogene{Bushman},chr15:41136216-41150405:+,serine_peptidase_inhibitor,_Kunitz_type_1,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	SKOV3_OVARY	0.12	0.81	2.1899	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	LRRFIP1--MLPH	54	149	LRRFIP1	23191	chr2:238666191:+	MLPH	65798	chr2:238462209:+	ONLY_REF_SPLICE	YES	213	7	0.49	0.97	0.778	2.1467	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[72258],LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,MLPH->chr2:238394071-238463961:+,melanophilin	SKOV3_OVARY	0.49	0.97	2.9247	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	TIMM23B--LINC00843	87	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2534	0.2305	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKOV3_OVARY	1	1	1.4839	TRUE	508	994	45	981	0	FALSE	ACH-000811
SKOV3_OVARY	FBXO42--PI4K2B	74	36	FBXO42	4719	chr1:16621278:-	PI4K2B	28044	chr4:25253943:+	ONLY_REF_SPLICE	YES	36	24	0.75	0.82	1.0661	0.5187	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,PI4K2B->chr4:25162263-25280714:+,phosphatidylinositol_4-kinase_type_2_beta	SKOV3_OVARY	0.75	0.82	1.5848	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	SLC7A6--PLA2G15	69	27	SLC7A6	3192	chr16:68300624:+	PLA2G15	27944	chr16:68293049:+	ONLY_REF_SPLICE	YES	42	36	0.7	0.73	0.9941	0.389	LOCAL_REARRANGEMENT:+:[3472],SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,PLA2G15->chr16:68279207-68294961:+,phospholipase_A2_group_XV	SKOV3_OVARY	0.7	0.73	1.3831	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	B4GALT1--RP11-778H2.1	70	21	B4GALT1	5187	chr9:33120417:-	RP11-778H2.1	16306	chr12:24380095:+	ONLY_REF_SPLICE	YES	41	0	0.69	1	1.0085	0.3025	B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,RP11-778H2.1->chr12:24376205-24390899:+	SKOV3_OVARY	0.69	1	1.311	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	PPFIBP1--SMCO2	53	84	PPFIBP1	1935	chr12:27677298:+	SMCO2	48990	chr12:27647233:+	ONLY_REF_SPLICE	YES	46	0	0.75	1	0.7636	1.2102	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	SKOV3_OVARY	0.75	1	1.9738	TRUE	0	1	0	3	1	TRUE	ACH-000811
SKOV3_OVARY	FAM222B--MYO18A	55	67	FAM222B	4726	chr17:27139227:-	MYO18A	19798	chr17:27494039:-	ONLY_REF_SPLICE	YES	14	7	0.9	0.95	0.7924	0.9653	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	SKOV3_OVARY	0.9	0.95	1.7577	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FAM104A--CPSF4L	56	60	FAM104A	2491	chr17:71228225:-	CPSF4L	12924	chr17:71257122:-	ONLY_REF_SPLICE	YES	120	1	0.49	0.99	0.8068	0.8644	LOCAL_REARRANGEMENT:-:[11696],FAM104A->chr17:71203492-71232892:-,family_with_sequence_similarity_104_member_A,CPSF4L->chr17:71244588-71258491:-,cleavage_and_polyadenylation_specific_factor_4-like	SKOV3_OVARY	0.49	0.99	1.6712	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	HIF1A--SYT16	56	38	HIF1A	1327	chr14:62162557:+	SYT16	26926	chr14:62541853:+	ONLY_REF_SPLICE	YES	1166	22	0.07	0.81	0.8068	0.5475	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,SYT16->chr14:62453803-62568431:+,synaptotagmin_16	SKOV3_OVARY	0.07	0.81	1.3543	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FAM222B--MYO18A	54	10	FAM222B	2441	chr17:27169700:-	MYO18A	19798	chr17:27494039:-	ONLY_REF_SPLICE	YES	0	7	1	0.9	0.778	0.1441	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	SKOV3_OVARY	0.9	1	0.9221	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	TIMM23--RP11-464F9.1	50	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	287	4	0.15	0.93	0.7204	0.0144	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKOV3_OVARY	0.15	0.93	0.7348	TRUE	519	3926	326	965	0	FALSE	ACH-000811
SKOV3_OVARY	SPINT1--HIF1A	32	70	SPINT1	2012	chr15:41137227:+	HIF1A	27173	chr14:62212409:+	ONLY_REF_SPLICE	YES	35	1317	0.74	0.07	0.461	1.0085	{Klijn_CCL:Ovary=1},SPINT1->Oncogene{Bushman},chr15:41136216-41150405:+,serine_peptidase_inhibitor,_Kunitz_type_1,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	SKOV3_OVARY	0.07	0.74	1.4695	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	MTCH1--RP5-1021I20.1	38	33	MTCH1	1446	chr6:36953629:-	RP5-1021I20.1	16709	chr14:74269588:+	ONLY_REF_SPLICE	YES	173	8	0.29	0.9	0.5475	0.4754	MTCH1->chr6:36935917-36954074:-,mitochondrial_carrier_1,RP5-1021I20.1->chr14:74254063-74269973:+	SKOV3_OVARY	0.29	0.9	1.0229	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	LRRFIP1--MLPH	3	137	LRRFIP1	23125	chr2:238666125:+	MLPH	65798	chr2:238462209:+	INCL_NON_REF_SPLICE	YES	214	7	0.4	0.95	0.0432	1.9738	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[72258],LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,MLPH->chr2:238394071-238463961:+,melanophilin	SKOV3_OVARY	0.4	0.95	2.017	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	LRRFIP1--MLPH	3	135	LRRFIP1	22098	chr2:238664830:+	MLPH	65329	chr2:238461740:+	ONLY_REF_SPLICE	YES	202	5	0.41	0.97	0.0432	1.945	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[72258],LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,MLPH->chr2:238394071-238463961:+,melanophilin	SKOV3_OVARY	0.41	0.97	1.9882	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	STRA13--NTN4	36	0	STRA13	2136	chr17:79980702:-	NTN4	14935	chr12:96104407:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5187	0	STRA13->chr17:79976578-79981983:-,stimulated_by_retinoic_acid_13,NTN4->chr12:96051583-96184930:-,netrin_4	SKOV3_OVARY	1	1	0.5187	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	HIF1A--SYT16	24	47	HIF1A	1327	chr14:62162557:+	SYT16	25713	chr14:62536321:+	ONLY_REF_SPLICE	YES	1166	6	0.06	0.92	0.3458	0.6771	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,SYT16->chr14:62453803-62568431:+,synaptotagmin_16	SKOV3_OVARY	0.06	0.92	1.0229	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FAM104A--CPSF4L	26	36	FAM104A	2491	chr17:71228225:-	CPSF4L	13975	chr17:71253972:-	ONLY_REF_SPLICE	YES	120	1	0.34	0.98	0.3746	0.5187	LOCAL_REARRANGEMENT:-:[11696],FAM104A->chr17:71203492-71232892:-,family_with_sequence_similarity_104_member_A,CPSF4L->chr17:71244588-71258491:-,cleavage_and_polyadenylation_specific_factor_4-like	SKOV3_OVARY	0.34	0.98	0.8933	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	AGFG1--COL4A3	31	15	AGFG1	1437	chr2:228337304:+	COL4A3	47541	chr2:228134626:+	ONLY_REF_SPLICE	YES	31	5	0.6	0.9	0.4466	0.2161	AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,COL4A3->Oncogene{Bushman},chr2:228029281-228179508:+,collagen_type_IV_alpha_3	SKOV3_OVARY	0.6	0.9	0.6627	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	B4GALT1--RP11-778H2.1	31	12	B4GALT1	2835	chr9:33135187:-	RP11-778H2.1	16306	chr12:24380095:+	ONLY_REF_SPLICE	YES	94	0	0.31	1	0.4466	0.1729	B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,RP11-778H2.1->chr12:24376205-24390899:+	SKOV3_OVARY	0.31	1	0.6195	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	HIF1A--SYT16	14	68	HIF1A	1327	chr14:62162557:+	SYT16	24046	chr14:62462594:+	ONLY_REF_SPLICE	YES	1166	0	0.07	1	0.2017	0.9797	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,SYT16->chr14:62453803-62568431:+,synaptotagmin_16	SKOV3_OVARY	0.07	1	1.1814	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	MT-TA--MT-TC	30	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4322	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKOV3_OVARY	1	1	0.4322	FALSE	462	80	0	856	0	FALSE	ACH-000811
SKOV3_OVARY	KANSL1--ARL17B	27	10	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	30	56	0.55	0.4	0.389	0.1441	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SKOV3_OVARY	0.4	0.55	0.5331	TRUE	181	1564	124	196	0	FALSE	ACH-000811
SKOV3_OVARY	NECAP2--ERC2	27	8	NECAP2	5381	chr1:16775696:+	ERC2	35782	chr3:55768946:-	ONLY_REF_SPLICE	YES	78	0	0.31	1	0.389	0.1153	NECAP2->NECAP_endocytosis_associated_2,chr1:16767167-16786573:+,ERC2->ELKS/RAB6-interacting/CAST_family_member_2,Oncogene{Bushman},chr3:55542336-56502391:-	SKOV3_OVARY	0.31	1	0.5043	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FAM222B--MYO18A	21	17	FAM222B	3499	chr17:27161311:-	MYO18A	19798	chr17:27494039:-	ONLY_REF_SPLICE	YES	8	7	0.83	0.84	0.3025	0.2449	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	SKOV3_OVARY	0.83	0.84	0.5474	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	GMEB2--KANSL1	19	21	GMEB2	12478	chr20:62219912:-	KANSL1	38321	chr17:44115944:-	INCL_NON_REF_SPLICE	YES	35	38	0.53	0.51	0.2737	0.3025	GMEB2->chr20:62218955-62258394:-,glucocorticoid_modulatory_element_binding_protein_2,KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-	SKOV3_OVARY	0.51	0.53	0.5762	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	PSKH1--CTCF	21	7	PSKH1	4241	chr16:67943609:+	CTCF	12296	chr16:67605051:+	ONLY_REF_SPLICE	YES	63	1	0.31	0.97	0.3025	0.1008	PSKH1->chr16:67927175-67963581:+,protein_serine_kinase_H1,CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+	SKOV3_OVARY	0.31	0.97	0.4033	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	LRRFIP1--MLPH	7	57	LRRFIP1	22098	chr2:238664830:+	MLPH	65921	chr2:238462332:+	ONLY_REF_SPLICE	YES	202	34	0.24	0.65	0.1008	0.8212	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[72258],LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,MLPH->chr2:238394071-238463961:+,melanophilin	SKOV3_OVARY	0.24	0.65	0.922	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	RP11-123O10.4--GRIP1	19	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2737	0.1008	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKOV3_OVARY	1	1	0.3745	FALSE	416	2512	207	587	0	FALSE	ACH-000811
SKOV3_OVARY	FAM222B--MYO18A	3	70	FAM222B	4777	chr17:27139176:-	MYO18A	19798	chr17:27494039:-	ONLY_REF_SPLICE	YES	15	7	0.83	0.91	0.0432	1.0085	FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	SKOV3_OVARY	0.83	0.91	1.0517	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	ZNF532--RP11-108P20.4	18	9	ZNF532	3980	chr18:56532811:+	RP11-108P20.4	29520	chr18:56481120:+	INCL_NON_REF_SPLICE	YES	22	0	0.55	1	0.2593	0.1297	LOCAL_REARRANGEMENT:+:[28236],ZNF532->chr18:56529832-56653712:+,zinc_finger_protein_532,RP11-108P20.4->chr18:56481112-56501596:+	SKOV3_OVARY	0.55	1	0.389	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	STRA13--NTN4	17	11	STRA13	2323	chr17:79980515:-	NTN4	14935	chr12:96104407:-	ONLY_REF_SPLICE	YES	3	202	0.9	0.12	0.2449	0.1585	STRA13->chr17:79976578-79981983:-,stimulated_by_retinoic_acid_13,NTN4->chr12:96051583-96184930:-,netrin_4	SKOV3_OVARY	0.12	0.9	0.4034	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	LRRFIP1--MLPH	3	62	LRRFIP1	23191	chr2:238666191:+	MLPH	65921	chr2:238462332:+	ONLY_REF_SPLICE	YES	213	34	0.23	0.66	0.0432	0.8932	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[72258],LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,MLPH->chr2:238394071-238463961:+,melanophilin	SKOV3_OVARY	0.23	0.66	0.9364	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	MTFMT--RASL12	18	1	MTFMT	4754	chr15:65313852:-	RASL12	16980	chr15:65357611:-	ONLY_REF_SPLICE	YES	49	6	0.28	0.76	0.2593	0.0144	LOCAL_REARRANGEMENT:-:[23702],MTFMT->chr15:65294845-65321977:-,mitochondrial_methionyl-tRNA_formyltransferase,RASL12->RAS_like_family_12,chr15:65345679-65369028:-	SKOV3_OVARY	0.28	0.76	0.2737	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	LRRFIP1--MLPH	1	65	LRRFIP1	21005	chr2:238662122:+	MLPH	65798	chr2:238462209:+	ONLY_REF_SPLICE	YES	161	7	0.29	0.9	0.0144	0.9365	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[72258],LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1,MLPH->chr2:238394071-238463961:+,melanophilin	SKOV3_OVARY	0.29	0.9	0.9509	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	OR51S1--TP53I11	17	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2449	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SKOV3_OVARY	1	1	0.2449	TRUE	402	216	10	229	0	FALSE	ACH-000811
SKOV3_OVARY	SLC7A6--PLA2G15	8	30	SLC7A6	3192	chr16:68300624:+	PLA2G15	26719	chr16:68289669:+	ONLY_REF_SPLICE	YES	42	31	0.47	0.55	0.1153	0.4322	LOCAL_REARRANGEMENT:+:[3472],SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,PLA2G15->chr16:68279207-68294961:+,phospholipase_A2_group_XV	SKOV3_OVARY	0.47	0.55	0.5475	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	NPM1P24--SET	14	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2017	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKOV3_OVARY	1	1	0.2017	TRUE	0	0	0	434	0	FALSE	ACH-000811
SKOV3_OVARY	HOOK2--ACTN3	11	9	HOOK2	13927	chr19:12878209:-	ACTN3	23196	chr11:66318710:+	ONLY_REF_SPLICE	YES	52	1	0.28	0.95	0.1585	0.1297	HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2,ACTN3->actinin_alpha_3_(gene/pseudogene),chr11:66313866-66330800:+	SKOV3_OVARY	0.28	0.95	0.2882	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FTH1--ACTG1	12	4	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	2256	0	0.01	1	0.1729	0.0576	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SKOV3_OVARY	0.01	1	0.2305	TRUE	0	0	0	64	0	FALSE	ACH-000811
SKOV3_OVARY	NECAP2--ERC2	11	8	NECAP2	5381	chr1:16775696:+	ERC2	35786	chr3:55768942:-	ONLY_REF_SPLICE	YES	78	0	0.2	1	0.1585	0.1153	NECAP2->NECAP_endocytosis_associated_2,chr1:16767167-16786573:+,ERC2->ELKS/RAB6-interacting/CAST_family_member_2,Oncogene{Bushman},chr3:55542336-56502391:-	SKOV3_OVARY	0.2	1	0.2738	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	GMEB2--KANSL1	9	14	GMEB2	11151	chr20:62221239:-	KANSL1	39880	chr17:44111648:-	INCL_NON_REF_SPLICE	YES	16	39	0.59	0.37	0.1297	0.2017	GMEB2->chr20:62218955-62258394:-,glucocorticoid_modulatory_element_binding_protein_2,KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-	SKOV3_OVARY	0.37	0.59	0.3314	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	HOOK2--ACTN3	10	10	HOOK2	13927	chr19:12878209:-	ACTN3	23010	chr11:66318524:+	ONLY_REF_SPLICE	YES	52	0	0.28	1	0.1441	0.1441	HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2,ACTN3->actinin_alpha_3_(gene/pseudogene),chr11:66313866-66330800:+	SKOV3_OVARY	0.28	1	0.2882	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	HIF1A-AS2--RP11-532F12.5	11	4	HIF1A-AS2	1213	chr14:62217603:-	RP11-532F12.5	8857	chr15:41130884:-	ONLY_REF_SPLICE	YES	2	21	0.88	0.42	0.1585	0.0576	HIF1A-AS2->HIF1A_antisense_RNA_2,chr14:62182276-62217815:-,RP11-532F12.5->chr15:41128006-41136585:-	SKOV3_OVARY	0.42	0.88	0.2161	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	ERBB2--MT-ND4L	10	5	ERBB2	24987	chr17:37884137:+	MT-ND4L	30171	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2658	0	0.01	1	0.1441	0.072	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKOV3_OVARY	0.01	1	0.2161	FALSE	0	1	0	4	0	FALSE	ACH-000811
SKOV3_OVARY	CTD-2337A12.1--CAST	11	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1585	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SKOV3_OVARY	1	1	0.1585	TRUE	347	1186	183	220	0	FALSE	ACH-000811
SKOV3_OVARY	FTH1--ACTG1	10	4	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	2307	0	0.01	1	0.1441	0.0576	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SKOV3_OVARY	0.01	1	0.2017	TRUE	0	0	0	64	0	FALSE	ACH-000811
SKOV3_OVARY	SLC7A6--PLA2G15	4	28	SLC7A6	3192	chr16:68300624:+	PLA2G15	26844	chr16:68289794:+	ONLY_REF_SPLICE	YES	42	28	0.43	0.53	0.0576	0.4034	LOCAL_REARRANGEMENT:+:[3472],SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,PLA2G15->chr16:68279207-68294961:+,phospholipase_A2_group_XV	SKOV3_OVARY	0.43	0.53	0.461	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FBXO42--PI4K2B	3	31	FBXO42	4719	chr1:16621278:-	PI4K2B	28062	chr4:25253961:+	INCL_NON_REF_SPLICE	YES	36	26	0.49	0.57	0.0432	0.4466	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,PI4K2B->chr4:25162263-25280714:+,phosphatidylinositol_4-kinase_type_2_beta	SKOV3_OVARY	0.49	0.57	0.4898	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	GMEB2--KANSL1	8	9	GMEB2	10477	chr20:62221913:-	KANSL1	39877	chr17:44111651:-	INCL_NON_REF_SPLICE	YES	51	39	0.25	0.3	0.1153	0.1297	GMEB2->chr20:62218955-62258394:-,glucocorticoid_modulatory_element_binding_protein_2,KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-	SKOV3_OVARY	0.25	0.3	0.245	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	C20orf194--NBR1	8	5	C20orf194	24151	chr20:3277508:-	NBR1	58381	chr17:41346367:+	ONLY_REF_SPLICE	YES	7	103	0.65	0.11	0.1153	0.072	C20orf194->chr20:3229951-3388272:-,chromosome_20_open_reading_frame_194,NBR1->Oncogene{Bushman},chr17:41322498-41363708:+,neighbor_of_BRCA1_gene_1	SKOV3_OVARY	0.11	0.65	0.1873	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FBXL20--RFX2	9	0	FBXL20	1351	chr17:37558426:-	RFX2	32273	chr19:6078345:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1297	0	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	SKOV3_OVARY	1	1	0.1297	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	TCHP--RP1-7G5.6	9	0	TCHP	11858	chr12:110352432:+	RP1-7G5.6	28276	chr12:110325598:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1297	0	LOCAL_REARRANGEMENT:+:[11797],TCHP->chr12:110338069-110421646:+,trichoplein_keratin_filament_binding,RP1-7G5.6->chr12:110318481-110326272:+	SKOV3_OVARY	1	1	0.1297	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FAM104A--CPSF4L	8	3	FAM104A	2491	chr17:71228225:-	CPSF4L	16227	chr17:71248862:-	ONLY_REF_SPLICE	YES	120	0	0.08	1	0.1153	0.0432	LOCAL_REARRANGEMENT:-:[11696],FAM104A->chr17:71203492-71232892:-,family_with_sequence_similarity_104_member_A,CPSF4L->chr17:71244588-71258491:-,cleavage_and_polyadenylation_specific_factor_4-like	SKOV3_OVARY	0.08	1	0.1585	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	TBC1D22A--GRAMD4	6	10	TBC1D22A	10096	chr22:47193517:+	GRAMD4	45509	chr22:47073044:+	ONLY_REF_SPLICE	YES	26	37	0.38	0.3	0.0864	0.1441	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	SKOV3_OVARY	0.3	0.38	0.2305	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	RP11-18I14.10--FAM213A	8	1	RP11-18I14.10	1514	chr10:104210087:+	FAM213A	13981	chr10:82180222:+	ONLY_REF_SPLICE	YES	12	58	0.43	0.13	0.1153	0.0144	RP11-18I14.10->chr10:104209574-104220863:+,FAM213A->chr10:82167585-82192753:+,family_with_sequence_similarity_213_member_A	SKOV3_OVARY	0.13	0.43	0.1297	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	RP11-680G10.1--GSE1	7	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.8	0.1008	0.072	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKOV3_OVARY	0.8	1	0.1728	TRUE	458	1351	185	561	0	FALSE	ACH-000811
SKOV3_OVARY	SLC7A6--PLA2G15	8	0	SLC7A6	1047	chr16:68298479:+	PLA2G15	27944	chr16:68293049:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1153	0	LOCAL_REARRANGEMENT:+:[3472],SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,PLA2G15->chr16:68279207-68294961:+,phospholipase_A2_group_XV	SKOV3_OVARY	1	1	0.1153	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	TBC1D22A--GRAMD4	5	12	TBC1D22A	10096	chr22:47193517:+	GRAMD4	44962	chr22:47072497:+	ONLY_REF_SPLICE	YES	26	49	0.4	0.26	0.072	0.1729	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	SKOV3_OVARY	0.26	0.4	0.2449	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	RP11-680G10.1--GSE1	7	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	16	1	0.38	0.1008	0.0432	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKOV3_OVARY	0.38	1	0.144	TRUE	465	1949	224	605	0	FALSE	ACH-000811
SKOV3_OVARY	SPATS2--ADCY6	6	5	SPATS2	2004	chr12:49761370:+	ADCY6	32705	chr12:49177221:-	ONLY_REF_SPLICE	YES	34	12	0.24	0.48	0.0864	0.072	SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2,ADCY6->adenylate_cyclase_6,chr12:49159975-49182820:-	SKOV3_OVARY	0.24	0.48	0.1584	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	RP11-18I14.10--FAM213A	6	3	RP11-18I14.10	6611	chr10:104215184:+	FAM213A	13981	chr10:82180222:+	ONLY_REF_SPLICE	YES	16	58	0.36	0.13	0.0864	0.0432	RP11-18I14.10->chr10:104209574-104220863:+,FAM213A->chr10:82167585-82192753:+,family_with_sequence_similarity_213_member_A	SKOV3_OVARY	0.13	0.36	0.1296	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	AGFG1--COL4A3	6	2	AGFG1	1437	chr2:228337304:+	COL4A3	49584	chr2:228137665:+	ONLY_REF_SPLICE	YES	31	32	0.21	0.2	0.0864	0.0288	AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,COL4A3->Oncogene{Bushman},chr2:228029281-228179508:+,collagen_type_IV_alpha_3	SKOV3_OVARY	0.2	0.21	0.1152	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FTH1--ACTG1	6	2	FTH1	1258	chr11:61734875:-	ACTG1	11019	chr17:79479357:-	INCL_NON_REF_SPLICE	YES	2819	133	0	0.06	0.0864	0.0288	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SKOV3_OVARY	0	0.06	0.1152	TRUE	0	0	0	64	0	FALSE	ACH-000811
SKOV3_OVARY	UBE2G1--ZZEF1	1	22	UBE2G1	5880	chr17:4210316:-	ZZEF1	72825	chr17:3912248:-	ONLY_REF_SPLICE	NO	0	71	1	0.24	0.0144	0.317	{Klijn_CCL:Ovary=1,Lymphoid=1},UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1	SKOV3_OVARY	0.24	1	0.3314	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	RP11-6N13.1--CTD-2374C24.1	6	1	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0864	0.0144	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SKOV3_OVARY	0.88	1	0.1008	TRUE	5	4	0	46	0	FALSE	ACH-000811
SKOV3_OVARY	RANBP10--PKP2	5	2	RANBP10	7667	chr16:67778191:-	PKP2	36844	chr12:32955490:-	ONLY_REF_SPLICE	YES	45	62	0.13	0.1	0.072	0.0288	RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-,PKP2->chr12:32943679-33049774:-,plakophilin_2	SKOV3_OVARY	0.1	0.13	0.1008	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	ZNF532--RP11-108P20.4	3	9	ZNF532	5178	chr18:56563854:+	RP11-108P20.4	29520	chr18:56481120:+	INCL_NON_REF_SPLICE	YES	27	0	0.31	1	0.0432	0.1297	LOCAL_REARRANGEMENT:+:[28236],ZNF532->chr18:56529832-56653712:+,zinc_finger_protein_532,RP11-108P20.4->chr18:56481112-56501596:+	SKOV3_OVARY	0.31	1	0.1729	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	ERBB2--MT-ND4L	5	0	ERBB2	16098	chr17:37872098:+	MT-ND4L	30326	chrM:10626:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.072	0	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKOV3_OVARY	1	1	0.072	FALSE	0	0	0	3	0	FALSE	ACH-000811
SKOV3_OVARY	UBE2G1--ZZEF1	1	16	UBE2G1	1358	chr17:4269566:-	ZZEF1	72022	chr17:3913051:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0144	0.2305	{Klijn_CCL:Ovary=1,Lymphoid=1},UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1	SKOV3_OVARY	0.94	1	0.2449	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	MT-ND1--MT-RNR2	4	3	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	12	0	0.37	1	0.0576	0.0432	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKOV3_OVARY	0.37	1	0.1008	FALSE	114	26	4	85	0	FALSE	ACH-000811
SKOV3_OVARY	MT-TA--MT-TC	4	0	MT-TA	1064	chrM:5592:-	MT-TC	4117	chrM:5779:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0576	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKOV3_OVARY	1	1	0.0576	FALSE	462	80	0	856	0	FALSE	ACH-000811
SKOV3_OVARY	TBC1D22A--GRAMD4	1	12	TBC1D22A	10096	chr22:47193517:+	GRAMD4	43877	chr22:47071365:+	ONLY_REF_SPLICE	YES	26	30	0.33	0.3	0.0144	0.1729	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[82830],TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	SKOV3_OVARY	0.3	0.33	0.1873	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	SPATS2--ADCY6	2	7	SPATS2	3067	chr12:49765073:+	ADCY6	32705	chr12:49177221:-	ONLY_REF_SPLICE	YES	72	12	0.11	0.43	0.0288	0.1008	SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2,ADCY6->adenylate_cyclase_6,chr12:49159975-49182820:-	SKOV3_OVARY	0.11	0.43	0.1296	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	GNG12-AS1--IL23R	3	2	GNG12-AS1	1134	chr1:68298119:+	IL23R	22776	chr1:67633775:+	ONLY_REF_SPLICE	NO	1	0	0.83	1	0.0432	0.0288	GNG12-AS1->GNG12_antisense_RNA_1,chr1:68297986-68668670:+,IL23R->chr1:67632083-67725662:+,interleukin_23_receptor	SKOV3_OVARY	0.83	1	0.072	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	HOOK2--ACTN3	2	6	HOOK2	13506	chr19:12878630:-	ACTN3	23010	chr11:66318524:+	ONLY_REF_SPLICE	YES	36	0	0.18	1	0.0288	0.0864	HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2,ACTN3->actinin_alpha_3_(gene/pseudogene),chr11:66313866-66330800:+	SKOV3_OVARY	0.18	1	0.1152	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	TRAPPC10--CTD-2036P10.3	3	2	TRAPPC10	24473	chr21:45514114:+	CTD-2036P10.3	37027	chr15:43033651:+	ONLY_REF_SPLICE	YES	52	10	0.09	0.33	0.0432	0.0288	TRAPPC10->chr21:45432200-45526433:+,trafficking_protein_particle_complex_10,CTD-2036P10.3->chr15:43031316-43035400:+	SKOV3_OVARY	0.09	0.33	0.072	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	MTFMT--RASL12	3	1	MTFMT	4754	chr15:65313852:-	RASL12	18037	chr15:65351756:-	ONLY_REF_SPLICE	YES	49	8	0.08	0.33	0.0432	0.0144	LOCAL_REARRANGEMENT:-:[23702],MTFMT->chr15:65294845-65321977:-,mitochondrial_methionyl-tRNA_formyltransferase,RASL12->RAS_like_family_12,chr15:65345679-65369028:-	SKOV3_OVARY	0.08	0.33	0.0576	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0.072	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKOV3_OVARY	1	1	0.1008	FALSE	407	2205	196	549	0	FALSE	ACH-000811
SKOV3_OVARY	SLC38A10--STRA13	3	1	SLC38A10	1689	chr17:79268659:-	STRA13	28611	chr17:79977785:-	INCL_NON_REF_SPLICE	YES	71	2	0.05	0.67	0.0432	0.0144	SLC38A10->chr17:79218800-79269347:-,solute_carrier_family_38_member_10,STRA13->chr17:79976578-79981983:-,stimulated_by_retinoic_acid_13	SKOV3_OVARY	0.05	0.67	0.0576	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	APP--MT-ND2	3	0	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SKOV3_OVARY	1	1	0.0432	FALSE	0	1	0	51	0	FALSE	ACH-000811
SKOV3_OVARY	FBXO42--PI4K2B	1	8	FBXO42	4719	chr1:16621278:-	PI4K2B	29199	chr4:25256687:+	ONLY_REF_SPLICE	YES	36	61	0.2	0.13	0.0144	0.1153	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,PI4K2B->chr4:25162263-25280714:+,phosphatidylinositol_4-kinase_type_2_beta	SKOV3_OVARY	0.13	0.2	0.1297	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	MT-TA--MT-TC	3	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKOV3_OVARY	1	1	0.0432	FALSE	462	80	0	856	0	FALSE	ACH-000811
SKOV3_OVARY	NECAP2--ERC2	1	8	NECAP2	6421	chr1:16776736:+	ERC2	35782	chr3:55768946:-	ONLY_REF_SPLICE	NO	87	0	0.09	1	0.0144	0.1153	NECAP2->NECAP_endocytosis_associated_2,chr1:16767167-16786573:+,ERC2->ELKS/RAB6-interacting/CAST_family_member_2,Oncogene{Bushman},chr3:55542336-56502391:-	SKOV3_OVARY	0.09	1	0.1297	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKOV3_OVARY	1	1	0.0432	TRUE	0	0	0	434	0	FALSE	ACH-000811
SKOV3_OVARY	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKOV3_OVARY	1	1	0.0432	FALSE	292	1546	117	613	0	FALSE	ACH-000811
SKOV3_OVARY	RP11-219G17.4--PLA2G6	3	0	RP11-219G17.4	2765	chr17:76267333:-	PLA2G6	39371	chr22:38509661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	GTEx_FI:{Testis=[count:23=pct:21.9],Brain=[count:18=pct:2.7],Nerve=[count:11=pct:6.5],Thyroid=[count:8=pct:4.5],Ovary=[count:6=pct:11.3],Colon=[count:5=pct:2.6],Pancreas=[count:3=pct:1.7],Uterus=[count:2=pct:4.7],Spleen=[count:2=pct:1.8],Blood=[count:2=pct:1.1],Prostate=[count:2=pct:3.3],Vagina=[count:1=pct:1.8],Blood_Vessel=[count:1=pct:0.3],Muscle=[count:1=pct:0.4],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},RP11-219G17.4->chr17:76257430-76274573:-,PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI	SKOV3_OVARY	1	1	0.0432	TRUE	63	15	0	9	0	FALSE	ACH-000811
SKOV3_OVARY	SYT16--PRKCH	3	0	SYT16	8073	chr14:62547992:+	PRKCH	27952	chr14:61857943:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	SYT16->chr14:62453803-62568431:+,synaptotagmin_16,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	SKOV3_OVARY	1	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	KANSL1--ARL17B	2	3	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	30	38	0.14	0.12	0.0288	0.0432	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SKOV3_OVARY	0.12	0.14	0.072	TRUE	20	16	0	28	0	FALSE	ACH-000811
SKOV3_OVARY	RP11-18I14.10--FAM213A	2	3	RP11-18I14.10	6611	chr10:104215184:+	FAM213A	13998	chr10:82180239:+	ONLY_REF_SPLICE	YES	16	81	0.24	0.06	0.0288	0.0432	RP11-18I14.10->chr10:104209574-104220863:+,FAM213A->chr10:82167585-82192753:+,family_with_sequence_similarity_213_member_A	SKOV3_OVARY	0.06	0.24	0.072	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	SPATS2--ADCY6	1	7	SPATS2	4151	chr12:49780920:+	ADCY6	32705	chr12:49177221:-	ONLY_REF_SPLICE	YES	73	12	0.1	0.4	0.0144	0.1008	SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2,ADCY6->adenylate_cyclase_6,chr12:49159975-49182820:-	SKOV3_OVARY	0.1	0.4	0.1152	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	B4GALT1--RP11-778H2.1	2	2	B4GALT1	1599	chr9:33166756:-	RP11-778H2.1	16306	chr12:24380095:+	ONLY_REF_SPLICE	YES	102	0	0.04	1	0.0288	0.0288	B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,RP11-778H2.1->chr12:24376205-24390899:+	SKOV3_OVARY	0.04	1	0.0576	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	FBXO42--PI4K2B	2	1	FBXO42	1200	chr1:16678750:-	PI4K2B	28044	chr4:25253943:+	ONLY_REF_SPLICE	YES	105	24	0.03	0.11	0.0288	0.0144	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,PI4K2B->chr4:25162263-25280714:+,phosphatidylinositol_4-kinase_type_2_beta	SKOV3_OVARY	0.03	0.11	0.0432	TRUE	0	0	0	1	0	FALSE	ACH-000811
SKOV3_OVARY	HOOK2--ACTN3	1	5	HOOK2	13506	chr19:12878630:-	ACTN3	23196	chr11:66318710:+	ONLY_REF_SPLICE	YES	36	1	0.14	0.86	0.0144	0.072	HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2,ACTN3->actinin_alpha_3_(gene/pseudogene),chr11:66313866-66330800:+	SKOV3_OVARY	0.14	0.86	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	C20orf194--NBR1	1	4	C20orf194	24151	chr20:3277508:-	NBR1	58995	chr17:41346981:+	ONLY_REF_SPLICE	YES	7	104	0.42	0.05	0.0144	0.0576	C20orf194->chr20:3229951-3388272:-,chromosome_20_open_reading_frame_194,NBR1->Oncogene{Bushman},chr17:41322498-41363708:+,neighbor_of_BRCA1_gene_1	SKOV3_OVARY	0.05	0.42	0.072	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	ERBB2IP--NLN	2	0	ERBB2IP	1332	chr5:65222634:+	NLN	52043	chr5:65105342:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_REARRANGEMENT:+:[54750],ERBB2IP->chr5:65222303-65378377:+,NLN->chr5:65018023-65167553:+,neurolysin	SKOV3_OVARY	1	1	0.0288	TRUE	0	1	0	1	1	TRUE	ACH-000811
SKOV3_OVARY	NRIP1--AF127936.7	2	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKOV3_OVARY	1	1	0.0288	FALSE	164	806	69	479	0	FALSE	ACH-000811
SKOV3_OVARY	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKOV3_OVARY	1	1	0.0288	FALSE	125	705	46	456	0	FALSE	ACH-000811
SKOV3_OVARY	RANBP10--PKP2	2	0	RANBP10	3278	chr16:67805937:-	PKP2	36844	chr12:32955490:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-,PKP2->chr12:32943679-33049774:-,plakophilin_2	SKOV3_OVARY	1	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0144	0.0576	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKOV3_OVARY	0.83	1	0.072	FALSE	515	4851	409	746	0	FALSE	ACH-000811
SKOV3_OVARY	ZNF738--CHMP1A	2	0	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SKOV3_OVARY	1	1	0.0288	TRUE	1	20	1	28	3	FALSE	ACH-000811
SKOV3_OVARY	RP11-120D5.1--MID1	1	3	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	0	28	1	0.12	0.0144	0.0432	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKOV3_OVARY	0.12	1	0.0576	FALSE	2	31	0	60	0	FALSE	ACH-000811
SKOV3_OVARY	RP11-120D5.1--MID1	1	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	0	28	1	0.12	0.0144	0.0432	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKOV3_OVARY	0.12	1	0.0576	FALSE	16	356	14	466	0	FALSE	ACH-000811
SKOV3_OVARY	SMG5--INSRR	1	3	SMG5	11029	chr1:156235572:-	INSRR	33616	chr1:156813271:-	ONLY_REF_SPLICE	NO	173	5	0.02	0.44	0.0144	0.0432	SMG5->SMG5_nonsense_mediated_mRNA_decay_factor,chr1:156219015-156252620:-,INSRR->chr1:156809855-156828810:-,insulin_receptor_related_receptor	SKOV3_OVARY	0.02	0.44	0.0576	TRUE	0	0	0	1	0	FALSE	ACH-000811
SKOV3_OVARY	STON2--RP11-299L17.3	1	3	STON2	1145	chr14:81902665:-	RP11-299L17.3	23146	chr14:81908786:-	ONLY_REF_SPLICE	YES	9	0	0.31	1	0.0144	0.0432	LOCAL_REARRANGEMENT:-:[5522],STON2->chr14:81727000-81902809:-,stonin_2,RP11-299L17.3->chr14:81908331-81916501:-	SKOV3_OVARY	0.31	1	0.0576	TRUE	0	0	0	2	0	TRUE	ACH-000811
SKOV3_OVARY	C20orf194--NBR1	1	2	C20orf194	23062	chr20:3278676:-	NBR1	58995	chr17:41346981:+	ONLY_REF_SPLICE	NO	8	104	0.27	0.03	0.0144	0.0288	C20orf194->chr20:3229951-3388272:-,chromosome_20_open_reading_frame_194,NBR1->Oncogene{Bushman},chr17:41322498-41363708:+,neighbor_of_BRCA1_gene_1	SKOV3_OVARY	0.03	0.27	0.0432	TRUE	0	0	0	1	0	FALSE	ACH-000811
SKOV3_OVARY	HIF1A-AS2--RP11-532F12.5	1	2	HIF1A-AS2	1213	chr14:62217603:-	RP11-532F12.5	10511	chr15:41128480:-	ONLY_REF_SPLICE	NO	2	10	0.6	0.23	0.0144	0.0288	HIF1A-AS2->HIF1A_antisense_RNA_2,chr14:62182276-62217815:-,RP11-532F12.5->chr15:41128006-41136585:-	SKOV3_OVARY	0.23	0.6	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	SAMD5--SASH1	1	2	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	1	8	0.75	0.27	0.0144	0.0288	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SKOV3_OVARY	0.27	0.75	0.0432	TRUE	53	396	64	110	0	FALSE	ACH-000811
SKOV3_OVARY	TRAPPC10--CTD-2036P10.3	1	2	TRAPPC10	24473	chr21:45514114:+	CTD-2036P10.3	35204	chr15:43031316:+	ONLY_REF_SPLICE	YES	52	0	0.05	1	0.0144	0.0288	TRAPPC10->chr21:45432200-45526433:+,trafficking_protein_particle_complex_10,CTD-2036P10.3->chr15:43031316-43035400:+	SKOV3_OVARY	0.05	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	GAS6--RANBP1	1	1	GAS6	1499	chr13:114566548:-	RANBP1	23427	chr22:20106536:+	ONLY_REF_SPLICE	YES	32	40	0.06	0.05	0.0144	0.0144	GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,RANBP1->RAN_binding_protein_1,chr22:20103461-20114878:+	SKOV3_OVARY	0.05	0.06	0.0288	TRUE	0	0	0	1	0	FALSE	ACH-000811
SKOV3_OVARY	HOOK2--ACTN3	1	1	HOOK2	13309	chr19:12878827:-	ACTN3	23010	chr11:66318524:+	ONLY_REF_SPLICE	NO	32	0	0.06	1	0.0144	0.0144	HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2,ACTN3->actinin_alpha_3_(gene/pseudogene),chr11:66313866-66330800:+	SKOV3_OVARY	0.06	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000811
SKOV3_OVARY	MTFMT--RASL12	1	1	MTFMT	4754	chr15:65313852:-	RASL12	18838	chr15:65350955:-	ONLY_REF_SPLICE	YES	49	16	0.04	0.11	0.0144	0.0144	LOCAL_REARRANGEMENT:-:[23702],MTFMT->chr15:65294845-65321977:-,mitochondrial_methionyl-tRNA_formyltransferase,RASL12->RAS_like_family_12,chr15:65345679-65369028:-	SKOV3_OVARY	0.04	0.11	0.0288	TRUE	0	0	0	1	0	FALSE	ACH-000811
SKOV3_OVARY	RP11-18I14.10--FAM213A	1	1	RP11-18I14.10	3371	chr10:104211944:+	FAM213A	13981	chr10:82180222:+	ONLY_REF_SPLICE	YES	18	58	0.1	0.03	0.0144	0.0144	RP11-18I14.10->chr10:104209574-104220863:+,FAM213A->chr10:82167585-82192753:+,family_with_sequence_similarity_213_member_A	SKOV3_OVARY	0.03	0.1	0.0288	TRUE	0	0	0	1	0	FALSE	ACH-000811
NCIH1339_LUNG	AP003900.6--AP000345.1	129	4	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	3	0	0.98	1	1.5668	0.0486	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1339_LUNG	0.98	1	1.6154	TRUE	4	17	0	31	0	FALSE	ACH-000921
NCIH1339_LUNG	ATP2C1--ALG1L2	116	36	ATP2C1	5569	chr3:130613619:+	ALG1L2	42429	chr3:129810104:+	ONLY_REF_SPLICE	YES	209	0	0.42	1	1.4089	0.4373	ATP2C1->ATPase_secretory_pathway_Ca2+_transporting_1,chr3:130569439-130735556:+,ALG1L2->ALG1,_chitobiosyldiphosphodolichol_beta-mannosyltransferase-like_2,chr3:129800674-129832070:+	NCIH1339_LUNG	0.42	1	1.8462	TRUE	0	0	0	2	0	TRUE	ACH-000921
NCIH1339_LUNG	PRRC2B--NUP214	106	32	PRRC2B	14428	chr9:134343140:+	NUP214	77608	chr9:134090599:+	ONLY_REF_SPLICE	YES	96	49	0.59	0.74	1.2875	0.3887	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa	NCIH1339_LUNG	0.59	0.74	1.6762	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	SMARCC1--MAP4	79	57	SMARCC1	2624	chr3:47814307:-	MAP4	69629	chr3:47899002:-	ONLY_REF_SPLICE	YES	179	406	0.43	0.25	0.9595	0.6923	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[68586],SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	NCIH1339_LUNG	0.25	0.43	1.6518	TRUE	0	3	0	1	3	TRUE	ACH-000921
NCIH1339_LUNG	SMARCC1--MAP4	59	79	SMARCC1	2624	chr3:47814307:-	MAP4	68536	chr3:47908828:-	ONLY_REF_SPLICE	YES	179	329	0.44	0.3	0.7166	0.9595	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[68586],SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	NCIH1339_LUNG	0.3	0.44	1.6761	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	KANSL1--ARL17B	47	33	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	32	90	0.71	0.47	0.5709	0.4008	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH1339_LUNG	0.47	0.71	0.9717	TRUE	181	1564	124	196	0	FALSE	ACH-000921
NCIH1339_LUNG	TNIP1--ANXA6	51	6	TNIP1	2716	chr5:150466646:-	ANXA6	49279	chr5:150502572:-	ONLY_REF_SPLICE	YES	58	212	0.5	0.21	0.6194	0.0729	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[7135],TNIP1->TNFAIP3_interacting_protein_1,chr5:150409506-150473138:-,ANXA6->annexin_A6,chr5:150480273-150537443:-	NCIH1339_LUNG	0.21	0.5	0.6923	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	KIAA0319L--RP4-728D4.2	43	32	KIAA0319L	6988	chr1:35972213:-	RP4-728D4.2	35257	chr1:36040299:-	ONLY_REF_SPLICE	YES	65	0	0.54	1	0.5223	0.3887	LOCAL_REARRANGEMENT:-:[11863],KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,RP4-728D4.2->chr1:36035414-36043330:-	NCIH1339_LUNG	0.54	1	0.911	TRUE	0	1	0	1	1	TRUE	ACH-000921
NCIH1339_LUNG	TIMM23B--LINC00843	35	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.4251	0.2308	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1339_LUNG	0.98	1	0.6559	TRUE	508	994	45	981	0	FALSE	ACH-000921
NCIH1339_LUNG	ZNF654--HMGB2	33	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4008	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1339_LUNG	1	1	0.4008	TRUE	0	0	0	518	0	FALSE	ACH-000921
NCIH1339_LUNG	CTCF--SLC9A5	29	12	CTCF	2435	chr16:67605167:+	SLC9A5	33197	chr16:67304641:+	ONLY_REF_SPLICE	YES	176	118	0.19	0.26	0.3522	0.1458	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,SLC9A5->chr16:67271586-67306093:+,solute_carrier_family_9_member_A5	NCIH1339_LUNG	0.19	0.26	0.498	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	ACTN4--RYR1	24	29	ACTN4	1259	chr19:39138547:+	RYR1	95231	chr19:39051753:+	ONLY_REF_SPLICE	YES	2018	6	0.03	0.9	0.2915	0.3522	LOCAL_REARRANGEMENT:+:[60085],ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	NCIH1339_LUNG	0.03	0.9	0.6437	TRUE	0	1	0	1	1	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ND4L	5	99	MT-ND4	1100	chrM:10859:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	YES	14	0	0.88	1	0.0607	1.2025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1339_LUNG	0.88	1	1.2632	FALSE	344	826	44	306	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ND4L	3	105	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	67	0	0.62	1	0.0364	1.2753	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1339_LUNG	0.62	1	1.3117	FALSE	344	827	44	306	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ND4L	3	104	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	68	0	0.61	1	0.0364	1.2632	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1339_LUNG	0.61	1	1.2996	FALSE	344	827	44	306	0	FALSE	ACH-000921
NCIH1339_LUNG	QKI--PACRG	23	24	QKI	9463	chr6:163899928:+	PACRG	44484	chr6:163735859:+	ONLY_REF_SPLICE	YES	221	2	0.18	0.96	0.2794	0.2915	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	NCIH1339_LUNG	0.18	0.96	0.5709	TRUE	0	1	0	3	1	TRUE	ACH-000921
NCIH1339_LUNG	TIMM23--RP11-464F9.1	25	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	159	4	0.14	0.87	0.3036	0.0121	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1339_LUNG	0.14	0.87	0.3157	TRUE	519	3926	326	965	0	FALSE	ACH-000921
NCIH1339_LUNG	SUZ12P--CRLF3	21	14	SUZ12P	11951	chr17:29096983:+	CRLF3	35192	chr17:29101362:-	ONLY_REF_SPLICE	YES	12	1	0.74	0.97	0.2551	0.17	NEIGHBORS_OVERLAP:+:-:[21520],SUZ12P->chr17:29036317-29117926:+,CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3	NCIH1339_LUNG	0.74	0.97	0.4251	FALSE	11	30	1	7	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ND4L	5	75	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	8	0	0.91	1	0.0607	0.9109	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1339_LUNG	0.91	1	0.9716	FALSE	344	821	44	306	0	FALSE	ACH-000921
NCIH1339_LUNG	PLXDC1--TAF13	22	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2672	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH1339_LUNG	1	1	0.2672	TRUE	7	10	0	216	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ND4L	4	68	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	7683	0	0.01	1	0.0486	0.8259	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1339_LUNG	0.01	1	0.8745	FALSE	344	827	44	306	0	FALSE	ACH-000921
NCIH1339_LUNG	LARS2--TGM4	17	3	LARS2	5051	chr3:45441865:+	TGM4	48035	chr3:44955076:+	ONLY_REF_SPLICE	YES	140	0	0.12	1	0.2065	0.0364	LARS2->chr3:45429998-45590913:+,leucyl-tRNA_synthetase_2,_mitochondrial,TGM4->chr3:44916100-44956482:+,transglutaminase_4	NCIH1339_LUNG	0.12	1	0.2429	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	17	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2065	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	1	1	0.2065	FALSE	230	193	14	283	0	FALSE	ACH-000921
NCIH1339_LUNG	QKI--PACRG	9	31	QKI	9463	chr6:163899928:+	PACRG	43367	chr6:163733811:+	ONLY_REF_SPLICE	YES	221	0	0.15	1	0.1093	0.3765	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	NCIH1339_LUNG	0.15	1	0.4858	TRUE	0	1	0	2	1	TRUE	ACH-000921
NCIH1339_LUNG	AP003900.6--AP000345.1	15	6	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	9	0	0.7	1	0.1822	0.0729	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1339_LUNG	0.7	1	0.2551	TRUE	0	8	0	37	1	FALSE	ACH-000921
NCIH1339_LUNG	PHRF1--RASSF7	15	6	PHRF1	9811	chr11:601701:+	RASSF7	22274	chr11:561762:+	ONLY_REF_SPLICE	YES	127	6	0.14	0.78	0.1822	0.0729	LOCAL_REARRANGEMENT:+:[12465],PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,RASSF7->Ras_association_domain_family_member_7,chr11:560404-564021:+	NCIH1339_LUNG	0.14	0.78	0.2551	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	MT-TA--MT-TC	15	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1822	0.0364	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1339_LUNG	1	1	0.2186	FALSE	462	80	0	856	0	FALSE	ACH-000921
NCIH1339_LUNG	NPM1P24--SET	14	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.17	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1339_LUNG	1	1	0.17	TRUE	0	0	0	434	0	FALSE	ACH-000921
NCIH1339_LUNG	SUZ12P--CRLF3	13	3	SUZ12P	11951	chr17:29096983:+	CRLF3	36039	chr17:29100515:-	ONLY_REF_SPLICE	YES	12	4	0.57	0.8	0.1579	0.0364	NEIGHBORS_OVERLAP:+:-:[21520],SUZ12P->chr17:29036317-29117926:+,CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3	NCIH1339_LUNG	0.57	0.8	0.1943	FALSE	11	30	1	7	0	FALSE	ACH-000921
NCIH1339_LUNG	AP003900.6--AP000345.1	12	5	AP003900.6	2187	chr21:11172043:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	16	0	0.52	1	0.1458	0.0607	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	NCIH1339_LUNG	0.52	1	0.2065	TRUE	1	2	0	16	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	13	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1579	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	1	1	0.1579	FALSE	230	198	14	283	0	FALSE	ACH-000921
NCIH1339_LUNG	ATP2C1--ALG1L2	9	15	ATP2C1	5131	chr3:130613181:+	ALG1L2	42429	chr3:129810104:+	ONLY_REF_SPLICE	YES	125	0	0.16	1	0.1093	0.1822	ATP2C1->ATPase_secretory_pathway_Ca2+_transporting_1,chr3:130569439-130735556:+,ALG1L2->ALG1,_chitobiosyldiphosphodolichol_beta-mannosyltransferase-like_2,chr3:129800674-129832070:+	NCIH1339_LUNG	0.16	1	0.2915	TRUE	0	0	0	2	0	TRUE	ACH-000921
NCIH1339_LUNG	EDF1--NDRG3	9	12	EDF1	2690	chr9:139757740:-	NDRG3	9003	chr20:35335410:-	ONLY_REF_SPLICE	YES	1095	101	0.02	0.17	0.1093	0.1458	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-	NCIH1339_LUNG	0.02	0.17	0.2551	TRUE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	KIAA0319L--RP4-728D4.2	3	33	KIAA0319L	6988	chr1:35972213:-	RP4-728D4.2	33845	chr1:36043334:-	INCL_NON_REF_SPLICE	YES	65	0	0.36	1	0.0364	0.4008	LOCAL_REARRANGEMENT:-:[11863],KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,RP4-728D4.2->chr1:36035414-36043330:-	NCIH1339_LUNG	0.36	1	0.4372	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	KIAA0319L--RP4-728D4.2	3	33	KIAA0319L	6988	chr1:35972213:-	RP4-728D4.2	34086	chr1:36043093:-	INCL_NON_REF_SPLICE	YES	65	0	0.36	1	0.0364	0.4008	LOCAL_REARRANGEMENT:-:[11863],KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,RP4-728D4.2->chr1:36035414-36043330:-	NCIH1339_LUNG	0.36	1	0.4372	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	CTCF--PLEKHG4	9	8	CTCF	2435	chr16:67605167:+	PLEKHG4	18838	chr16:67312644:+	ONLY_REF_SPLICE	YES	176	15	0.09	0.53	0.1093	0.0972	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,PLEKHG4->chr16:67311413-67323402:+,pleckstrin_homology_and_RhoGEF_domain_containing_G4	NCIH1339_LUNG	0.09	0.53	0.2065	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	PIGG--Z95704.2	7	15	PIGG	2402	chr4:494390:+	Z95704.2	28436	chr4:85622:+	INCL_NON_REF_SPLICE	YES	124	0	0.15	1	0.085	0.1822	PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G,Z95704.2->chr4:85621-87340:+	NCIH1339_LUNG	0.15	1	0.2672	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	FRAS1--NRP1	9	2	FRAS1	36634	chr4:79308855:+	NRP1	98354	chr10:33552801:-	ONLY_REF_SPLICE	YES	0	32	1	0.26	0.1093	0.0243	FRAS1->Fraser_extracellular_matrix_complex_subunit_1,chr4:78978724-79465423:+,NRP1->chr10:33466420-33625190:-,neuropilin_1	NCIH1339_LUNG	0.26	1	0.1336	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ND4L	5	18	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1397	0	0.02	1	0.0607	0.2186	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1339_LUNG	0.02	1	0.2793	FALSE	344	827	44	306	0	FALSE	ACH-000921
NCIH1339_LUNG	NCOA7--TPD52L1	8	5	NCOA7	7019	chr6:126136550:+	TPD52L1	46070	chr6:125583980:+	ONLY_REF_SPLICE	YES	27	61	0.33	0.18	0.0972	0.0607	NCOA7->chr6:126102307-126252266:+,nuclear_receptor_coactivator_7,TPD52L1->chr6:125440195-125585553:+,tumor_protein_D52-like_1	NCIH1339_LUNG	0.18	0.33	0.1579	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	PIGG--Z95704.2	5	16	PIGG	2971	chr4:494959:+	Z95704.2	28436	chr4:85622:+	INCL_NON_REF_SPLICE	YES	128	0	0.14	1	0.0607	0.1943	PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G,Z95704.2->chr4:85621-87340:+	NCIH1339_LUNG	0.14	1	0.255	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	QKI--PACRG	1	31	QKI	9463	chr6:163899928:+	PACRG	40952	chr6:163600248:+	ONLY_REF_SPLICE	YES	221	0	0.13	1	0.0121	0.3765	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	NCIH1339_LUNG	0.13	1	0.3886	TRUE	0	1	0	1	1	TRUE	ACH-000921
NCIH1339_LUNG	SMARCC1--MAP4	2	27	SMARCC1	1504	chr3:47823093:-	MAP4	68536	chr3:47908828:-	ONLY_REF_SPLICE	YES	186	329	0.13	0.08	0.0243	0.3279	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[68586],SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	NCIH1339_LUNG	0.08	0.13	0.3522	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	MT-ATP6--MT-CO1	8	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	10418	20036	0	0	0.0972	0.0121	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1339_LUNG	0	0	0.1093	FALSE	183	104	9	328	0	FALSE	ACH-000921
NCIH1339_LUNG	USP32--RP11-264B14.1	8	1	USP32	9774	chr17:58365884:-	RP11-264B14.1	47126	chr17:59113745:-	ONLY_REF_SPLICE	YES	70	0	0.11	1	0.0972	0.0121	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,RP11-264B14.1->chr17:59111997-59147483:-	NCIH1339_LUNG	0.11	1	0.1093	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	SEPT9--ASPH	8	0	SEPT9	8751	chr17:75316430:+	ASPH	50543	chr8:62596747:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0972	0	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	NCIH1339_LUNG	1	1	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	WI2-1896O14.1--RP11-353N4.1	7	4	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.085	0.0486	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	NCIH1339_LUNG	1	1	0.1336	TRUE	361	258	24	38	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	7	2	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	20152	746	0	0.01	0.085	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	0	0.01	0.1093	FALSE	231	217	16	283	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ND4L	6	4	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	144	0	0.06	1	0.0729	0.0486	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1339_LUNG	0.06	1	0.1215	FALSE	344	827	44	306	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND1--MT-RNR2	6	3	MT-ND1	1264	chrM:3570:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	34	0	0.21	1	0.0729	0.0364	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1339_LUNG	0.21	1	0.1093	FALSE	114	26	4	85	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	4	11	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	16207	0	0	1	0.0486	0.1336	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	0	1	0.1822	FALSE	231	217	16	283	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	5	6	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	16555	1544	0	0.01	0.0607	0.0729	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	0	0.01	0.1336	FALSE	231	217	16	283	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	6	1	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	18104	1544	0	0	0.0729	0.0121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	0	0	0.085	FALSE	231	205	14	283	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	4	9	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	14471	214	0	0.06	0.0486	0.1093	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	0	0.06	0.1579	FALSE	231	217	16	283	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	3	13	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2	9	0.89	0.64	0.0364	0.1579	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	0.64	0.89	0.1943	FALSE	209	205	15	279	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	3	12	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2312	75	0.01	0.17	0.0364	0.1458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	0.01	0.17	0.1822	FALSE	216	209	16	281	0	FALSE	ACH-000921
NCIH1339_LUNG	NRIP1--AF127936.7	4	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.52	1	0.0486	0.085	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1339_LUNG	0.52	1	0.1336	FALSE	164	806	69	479	0	FALSE	ACH-000921
NCIH1339_LUNG	RP11-353N4.6--SEC22B	5	3	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	461	829	0.02	0.01	0.0607	0.0364	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	NCIH1339_LUNG	0.01	0.02	0.0971	FALSE	49	42	7	43	0	FALSE	ACH-000921
NCIH1339_LUNG	KANSL1--ARL17B	2	14	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	32	90	0.33	0.15	0.0243	0.17	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH1339_LUNG	0.15	0.33	0.1943	TRUE	105	90	7	93	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ATP6--MT-CO1	5	2	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	12728	18692	0	0	0.0607	0.0243	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1339_LUNG	0	0	0.085	FALSE	183	104	9	328	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	4	6	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	16190	0	0	1	0.0486	0.0729	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	0	1	0.1215	FALSE	231	217	16	283	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	18216	0	0	1	0.0607	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	0	1	0.085	FALSE	231	217	16	283	0	FALSE	ACH-000921
NCIH1339_LUNG	SMARCC1--MAP4	1	18	SMARCC1	1504	chr3:47823093:-	MAP4	69629	chr3:47899002:-	ONLY_REF_SPLICE	NO	186	406	0.09	0.04	0.0121	0.2186	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[68586],SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	NCIH1339_LUNG	0.04	0.09	0.2307	TRUE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	ATF2--CHN1	4	5	ATF2	17534	chr2:175945388:-	CHN1	26246	chr2:175816930:-	ONLY_REF_SPLICE	YES	94	38	0.09	0.19	0.0486	0.0607	NEIGHBORS[66881],ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-,CHN1->Oncogene{Bushman},chimerin_1,chr2:175664091-175870097:-	NCIH1339_LUNG	0.09	0.19	0.1093	FALSE	0	0	0	7	0	FALSE	ACH-000921
NCIH1339_LUNG	EDF1--NDRG3	2	13	EDF1	3072	chr9:139757358:-	NDRG3	9003	chr20:35335410:-	ONLY_REF_SPLICE	YES	660	101	0.02	0.13	0.0243	0.1579	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-	NCIH1339_LUNG	0.02	0.13	0.1822	TRUE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	EDF1--NDRG3	3	9	EDF1	2690	chr9:139757740:-	NDRG3	11280	chr20:35317187:-	ONLY_REF_SPLICE	YES	1095	102	0.01	0.11	0.0364	0.1093	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-	NCIH1339_LUNG	0.01	0.11	0.1457	TRUE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ATP6--MT-CO1	5	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10577	20432	0	0	0.0607	0.0121	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1339_LUNG	0	0	0.0728	FALSE	183	104	9	328	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	3	9	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14471	75	0	0.14	0.0364	0.1093	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	0	0.14	0.1457	FALSE	231	217	16	283	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ND4L	3	9	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	135	0	0.08	1	0.0364	0.1093	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1339_LUNG	0.08	1	0.1457	FALSE	344	827	44	306	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ND4L	3	9	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	7223	0	0	1	0.0364	0.1093	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1339_LUNG	0	1	0.1457	FALSE	344	827	44	306	0	FALSE	ACH-000921
NCIH1339_LUNG	POU6F2--LRP1B	5	1	POU6F2	8027	chr7:39125631:+	LRP1B	52874	chr2:141747226:-	ONLY_REF_SPLICE	YES	9	2	0.4	0.75	0.0607	0.0121	POU6F2->Oncogene{Bushman},POU_class_6_homeobox_2,chr7:39017598-39532694:+,LRP1B->ArcherDX_panel,FoundationOne_panel,LDL_receptor_related_protein_1B,chr2:140988992-142889270:-	NCIH1339_LUNG	0.4	0.75	0.0728	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ND4L	4	4	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	144	0	0.05	1	0.0486	0.0486	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1339_LUNG	0.05	1	0.0972	FALSE	344	827	44	306	0	FALSE	ACH-000921
NCIH1339_LUNG	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1339_LUNG	1	1	0.0607	TRUE	0	0	0	434	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND1--MT-RNR2	4	3	MT-ND1	1246	chrM:3552:+	MT-RNR2	5019	chrM:1733:+	INCL_NON_REF_SPLICE	YES	33	0	0.17	1	0.0486	0.0364	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1339_LUNG	0.17	1	0.085	FALSE	114	26	4	85	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	1844	chrM:11603:+	MT-ATP8	5503	chrM:8490:+	INCL_NON_REF_SPLICE	YES	16646	1034	0	0.01	0.0364	0.085	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	0	0.01	0.1214	FALSE	231	217	16	283	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-TA--MT-TC	4	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0.0364	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1339_LUNG	1	1	0.085	FALSE	462	80	0	856	0	FALSE	ACH-000921
NCIH1339_LUNG	RP11-6N13.1--CTD-2374C24.1	4	3	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0.0364	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH1339_LUNG	1	1	0.085	TRUE	5	4	0	46	0	FALSE	ACH-000921
NCIH1339_LUNG	NRIP1--AF127936.7	3	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.0364	0.0729	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1339_LUNG	0.6	1	0.1093	FALSE	125	705	46	456	0	FALSE	ACH-000921
NCIH1339_LUNG	ATP2C1--ALG1L2	4	1	ATP2C1	1334	chr3:130569772:+	ALG1L2	42429	chr3:129810104:+	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.0486	0.0121	ATP2C1->ATPase_secretory_pathway_Ca2+_transporting_1,chr3:130569439-130735556:+,ALG1L2->ALG1,_chitobiosyldiphosphodolichol_beta-mannosyltransferase-like_2,chr3:129800674-129832070:+	NCIH1339_LUNG	0.36	1	0.0607	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	RP11-353N4.6--SEC22B	4	1	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	489	829	0.01	0.01	0.0486	0.0121	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	NCIH1339_LUNG	0.01	0.01	0.0607	FALSE	49	42	7	43	0	FALSE	ACH-000921
NCIH1339_LUNG	HIST2H2BB--CTD-2175A23.1	3	4	HIST2H2BB	1424	chr1:149398803:-	CTD-2175A23.1	8978	chr5:52244737:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0.0486	HIST2H2BB->chr1:149369722-149399226:-,histone_cluster_2,_H2bb_(pseudogene),CTD-2175A23.1->chr5:52228249-52286108:-	NCIH1339_LUNG	1	1	0.085	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	16383	0	0	1	0.0364	0.0486	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	0	1	0.085	FALSE	231	217	16	283	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	16538	9	0	0.44	0.0364	0.0486	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	0	0.44	0.085	FALSE	231	217	16	283	0	FALSE	ACH-000921
NCIH1339_LUNG	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1339_LUNG	1	1	0.0486	TRUE	0	0	0	434	0	FALSE	ACH-000921
NCIH1339_LUNG	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1339_LUNG	1	1	0.0486	TRUE	458	1351	185	561	0	FALSE	ACH-000921
NCIH1339_LUNG	TNIP1--ANXA6	1	11	TNIP1	4273	chr5:150460441:-	ANXA6	49279	chr5:150502572:-	ONLY_REF_SPLICE	YES	339	212	0.03	0.05	0.0121	0.1336	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[7135],TNIP1->TNFAIP3_interacting_protein_1,chr5:150409506-150473138:-,ANXA6->annexin_A6,chr5:150480273-150537443:-	NCIH1339_LUNG	0.03	0.05	0.1457	TRUE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	DDOST--FTL	3	2	DDOST	3547	chr1:20982243:-	FTL	10537	chr19:49468574:+	INCL_NON_REF_SPLICE	YES	1180	0	0	1	0.0364	0.0243	DDOST->chr1:20978270-20988000:-,dolichyl-diphosphooligosaccharide--protein_glycosyltransferase_non-catalytic_subunit,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	NCIH1339_LUNG	0	1	0.0607	FALSE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12859	20432	0	0	0.0364	0.0243	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1339_LUNG	0	0	0.0607	FALSE	183	104	9	328	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18134	0	0	1	0.0364	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	0	1	0.0607	FALSE	231	217	16	283	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	18094	0	0	1	0.0364	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	0	1	0.0607	FALSE	231	217	16	283	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1531	chrM:11290:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	20571	4	0	0.56	0.0364	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	0	0.56	0.0607	FALSE	231	217	16	283	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	18128	0	0	1	0.0364	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	0	1	0.0607	FALSE	231	217	16	283	0	FALSE	ACH-000921
NCIH1339_LUNG	DROSHA--CTD-2066L21.3	3	1	DROSHA	20988	chr5:31468046:-	CTD-2066L21.3	49220	chr5:33023433:-	ONLY_REF_SPLICE	YES	186	12	0.02	0.25	0.0364	0.0121	DROSHA->chr5:31400604-31532303:-,drosha_ribonuclease_III,CTD-2066L21.3->chr5:32925745-33298016:-	NCIH1339_LUNG	0.02	0.25	0.0485	TRUE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	FTH1--ACTG1	3	1	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	5967	3	0	0.57	0.0364	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH1339_LUNG	0	0.57	0.0485	FALSE	0	0	0	64	0	FALSE	ACH-000921
NCIH1339_LUNG	LINC01036--LINC01037	3	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	NCIH1339_LUNG	1	1	0.0364	FALSE	0	26	0	50	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	1	1	0.0364	FALSE	231	205	14	283	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1200	chrM:10959:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	1	1	0.0364	FALSE	230	193	14	283	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	1	1	0.0364	FALSE	231	204	14	283	0	FALSE	ACH-000921
NCIH1339_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1339_LUNG	1	1	0.0364	FALSE	231	205	14	283	0	FALSE	ACH-000921
NCIH1339_LUNG	NRIP1--AF127936.7	2	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0.0486	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1339_LUNG	1	1	0.0729	FALSE	292	1546	117	613	0	FALSE	ACH-000921
NCIH1339_LUNG	PRRC2B--NUP214	2	4	PRRC2B	14428	chr9:134343140:+	NUP214	79045	chr9:134098165:+	ONLY_REF_SPLICE	YES	96	43	0.06	0.12	0.0243	0.0486	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa	NCIH1339_LUNG	0.06	0.12	0.0729	TRUE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1339_LUNG	1	1	0.0364	TRUE	465	1949	224	605	0	FALSE	ACH-000921
NCIH1339_LUNG	SOD2--UBE4B	3	0	SOD2	9723	chr6:160113693:-	UBE4B	35405	chr1:10155519:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	SOD2->chr6:160090089-160183561:-,superoxide_dismutase_2,_mitochondrial,UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B	NCIH1339_LUNG	1	1	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	DUSP16--MANSC1	2	2	DUSP16	1267	chr12:12715051:-	MANSC1	19548	chr12:12496348:-	ONLY_REF_SPLICE	YES	29	39	0.12	0.09	0.0243	0.0243	DUSP16->chr12:12628829-12715317:-,dual_specificity_phosphatase_16,MANSC1->MANSC_domain_containing_1,chr12:12482198-12503475:-	NCIH1339_LUNG	0.09	0.12	0.0486	TRUE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	QKI--PACRG	1	6	QKI	2336	chr6:163836367:+	PACRG	44484	chr6:163735859:+	ONLY_REF_SPLICE	YES	143	2	0.05	0.78	0.0121	0.0729	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	NCIH1339_LUNG	0.05	0.78	0.085	TRUE	0	0	0	2	0	TRUE	ACH-000921
NCIH1339_LUNG	RNF216P1--AP5Z1	2	2	RNF216P1	2310	chr7:5016067:+	AP5Z1	19588	chr7:4820806:+	ONLY_REF_SPLICE	YES	301	157	0.01	0.02	0.0243	0.0243	RNF216P1->chr7:5013619-5080306:+,ring_finger_protein_216_pseudogene_1,AP5Z1->adaptor_related_protein_complex_5_zeta_1_subunit,chr7:4815253-4833943:+	NCIH1339_LUNG	0.01	0.02	0.0486	FALSE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	TNIP1--ANXA6	2	2	TNIP1	2716	chr5:150466646:-	ANXA6	50030	chr5:150501821:-	ONLY_REF_SPLICE	YES	58	194	0.06	0.02	0.0243	0.0243	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[7135],TNIP1->TNFAIP3_interacting_protein_1,chr5:150409506-150473138:-,ANXA6->annexin_A6,chr5:150480273-150537443:-	NCIH1339_LUNG	0.02	0.06	0.0486	TRUE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	LINC00473--PDE10A	1	5	LINC00473	9097	chr6:166324296:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	NO	14	1	0.3	0.86	0.0121	0.0607	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	NCIH1339_LUNG	0.3	0.86	0.0728	FALSE	2	5	0	11	0	FALSE	ACH-000921
NCIH1339_LUNG	MATR3--CTNNA1	2	1	MATR3	9772	chr5:138629494:+	CTNNA1	60598	chr5:138240038:+	ONLY_REF_SPLICE	YES	69	838	0.04	0	0.0243	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	NCIH1339_LUNG	0	0.04	0.0364	FALSE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	NCOA7--TPD52L1	1	5	NCOA7	7019	chr6:126136550:+	TPD52L1	42116	chr6:125578244:+	ONLY_REF_SPLICE	YES	27	60	0.18	0.09	0.0121	0.0607	NCOA7->chr6:126102307-126252266:+,nuclear_receptor_coactivator_7,TPD52L1->chr6:125440195-125585553:+,tumor_protein_D52-like_1	NCIH1339_LUNG	0.09	0.18	0.0728	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	RAB30-AS1--PICALM	2	1	RAB30-AS1	1637	chr11:82783744:+	PICALM	11823	chr11:85742653:-	ONLY_REF_SPLICE	YES	90	346	0.03	0.01	0.0243	0.0121	RAB30-AS1->RAB30_antisense_RNA_1_(head_to_head),chr11:82783108-82817761:+,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	NCIH1339_LUNG	0.01	0.03	0.0364	FALSE	0	0	0	2	0	FALSE	ACH-000921
NCIH1339_LUNG	USP32--RP11-264B14.1	2	1	USP32	9774	chr17:58365884:-	RP11-264B14.1	48298	chr17:59112135:-	ONLY_REF_SPLICE	YES	70	0	0.04	1	0.0243	0.0121	USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,RP11-264B14.1->chr17:59111997-59147483:-	NCIH1339_LUNG	0.04	1	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	AP001065.2--UBE2G2	2	0	AP001065.2	2229	chr21:45843259:-	UBE2G2	14786	chr21:46197332:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	AP001065.2->chr21:45834473-45845155:-,UBE2G2->chr21:46188955-46221934:-,ubiquitin_conjugating_enzyme_E2_G2	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	ATL3--AP003774.1	2	0	ATL3	11532	chr11:63400498:-	AP003774.1	23621	chr11:64095008:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	ATL3->atlastin_GTPase_3,chr11:63391559-63439393:-,AP003774.1->chr11:64092522-64096976:-	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	ENOX2--RP1-23K20.2	2	0	ENOX2	3378	chrX:129917521:-	RP1-23K20.2	26484	chrX:130115830:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	LOCAL_REARRANGEMENT:-:[78356],ENOX2->chrX:129757350-130037208:-,ecto-NOX_disulfide-thiol_exchanger_2,RP1-23K20.2->chrX:130115564-130192120:-	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	GPALPP1--GTF2F2	2	0	GPALPP1	1191	chr13:45563877:+	GTF2F2	27964	chr13:45827006:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	NEIGHBORS[86904],GPALPP1->GPALPP_motifs_containing_1,chr13:45563687-45607746:+,GTF2F2->chr13:45694650-45858237:+,general_transcription_factor_IIF_subunit_2	NCIH1339_LUNG	1	1	0.0243	FALSE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	LRRCC1--RALYL	1	4	LRRCC1	18529	chr8:86053752:+	RALYL	32219	chr8:85762215:+	ONLY_REF_SPLICE	YES	74	0	0.06	1	0.0121	0.0486	LRRCC1->chr8:86019382-86058311:+,leucine_rich_repeat_and_coiled-coil_centrosomal_protein_1,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	NCIH1339_LUNG	0.06	1	0.0607	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	PBX3--MAPKAP1	2	0	PBX3	2279	chr9:128510902:+	MAPKAP1	39526	chr9:128246862:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	2	0	TRUE	ACH-000921
NCIH1339_LUNG	PLA2G4C--LIG1	2	0	PLA2G4C	5509	chr19:48607845:-	LIG1	32464	chr19:48668880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	LOCAL_REARRANGEMENT:-:[4628],PLA2G4C->chr19:48551100-48614074:-,phospholipase_A2_group_IVC,LIG1->DNA_ligase_1,chr19:48618702-48673860:-	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	RCC1--AIM1	2	0	RCC1	2916	chr1:28835413:+	AIM1	35631	chr6:107003643:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,AIM1->absent_in_melanoma_1,chr6:106959730-107018326:+	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	SEPT9--ASPH	2	0	SEPT9	6917	chr17:75303279:+	ASPH	50543	chr8:62596747:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	TCF12--SLTM	2	0	TCF12	3439	chr15:57213296:+	SLTM	46731	chr15:59209198:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	TTC28-AS1--CTBP1	2	0	TTC28-AS1	5841	chr22:28331218:+	CTBP1	28044	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	TTC28-AS1->TTC28_antisense_RNA_1,chr22:28315364-28404569:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH1339_LUNG	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	UBA6--RP11-646E20.6	1	4	UBA6	6849	chr4:68539415:-	RP11-646E20.6	46109	chr4:69057242:-	ONLY_REF_SPLICE	YES	329	0	0.01	1	0.0121	0.0486	UBA6->chr4:68478370-68566897:-,ubiquitin_like_modifier_activating_enzyme_6,RP11-646E20.6->chr4:69049802-69093787:-	NCIH1339_LUNG	0.01	1	0.0607	FALSE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	APP--CYYR1	1	3	APP	1565	chr21:27542882:-	CYYR1	35863	chr21:27852748:-	ONLY_REF_SPLICE	YES	1591	0	0	1	0.0121	0.0364	{Klijn_CCL:Breast=1},APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,CYYR1->chr21:27838528-27945603:-,cysteine_and_tyrosine_rich_1	NCIH1339_LUNG	0	1	0.0485	FALSE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	LINC00473--PDE10A	1	3	LINC00473	1520	chr6:166401017:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	NO	129	1	0.03	0.8	0.0121	0.0364	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	NCIH1339_LUNG	0.03	0.8	0.0485	FALSE	6	13	0	15	0	FALSE	ACH-000921
NCIH1339_LUNG	C1orf132--PLXNA2	1	2	C1orf132	2221	chr1:208041271:-	PLXNA2	31350	chr1:208315808:-	ONLY_REF_SPLICE	YES	2	7	0.6	0.3	0.0121	0.0243	C1orf132->chr1:207974863-208042495:-,chromosome_1_open_reading_frame_132,PLXNA2->chr1:208195587-208417665:-,plexin_A2	NCIH1339_LUNG	0.3	0.6	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	DUSP16--MANSC1	1	2	DUSP16	3742	chr12:12707470:-	MANSC1	19548	chr12:12496348:-	ONLY_REF_SPLICE	YES	35	39	0.08	0.07	0.0121	0.0243	DUSP16->chr12:12628829-12715317:-,dual_specificity_phosphatase_16,MANSC1->MANSC_domain_containing_1,chr12:12482198-12503475:-	NCIH1339_LUNG	0.07	0.08	0.0364	TRUE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	GPATCH2L--RP11-1152H15.1	1	2	GPATCH2L	16680	chr14:76662315:+	RP11-1152H15.1	42521	chr14:88230154:-	ONLY_REF_SPLICE	NO	65	0	0.04	1	0.0121	0.0243	GPATCH2L->G-patch_domain_containing_2_like,chr14:76618259-76720685:+,RP11-1152H15.1->chr14:88176763-88338635:-	NCIH1339_LUNG	0.04	1	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	ATF6B--TNNT1	1	1	ATF6B	3137	chr6:32093894:-	TNNT1	16909	chr19:55658075:-	ONLY_REF_SPLICE	NO	224	648	0.01	0	0.0121	0.0121	ATF6B->activating_transcription_factor_6_beta,chr6:32065953-32096030:-,TNNT1->chr19:55644162-55660722:-,troponin_T1,_slow_skeletal_type	NCIH1339_LUNG	0	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	DNER--PID1	1	1	DNER	1411	chr2:230578864:-	PID1	27564	chr2:230020680:-	ONLY_REF_SPLICE	YES	237	307	0.01	0.01	0.0121	0.0121	NEIGHBORS[86344],DNER->chr2:230222345-230579274:-,delta/notch_like_EGF_repeat_containing,PID1->chr2:229715242-230136001:-,phosphotyrosine_interaction_domain_containing_1	NCIH1339_LUNG	0.01	0.01	0.0242	FALSE	0	2	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	EHBP1--COMMD1	1	1	EHBP1	10472	chr2:63058293:+	COMMD1	45984	chr2:62362966:+	ONLY_REF_SPLICE	NO	81	92	0.02	0.02	0.0121	0.0121	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,COMMD1->chr2:62115859-62374382:+,copper_metabolism_domain_containing_1	NCIH1339_LUNG	0.02	0.02	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	KIAA0319L--RP4-728D4.2	1	1	KIAA0319L	4118	chr1:36019951:-	RP4-728D4.2	35257	chr1:36040299:-	ONLY_REF_SPLICE	YES	121	0	0.02	1	0.0121	0.0121	LOCAL_REARRANGEMENT:-:[11863],KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,RP4-728D4.2->chr1:36035414-36043330:-	NCIH1339_LUNG	0.02	1	0.0242	TRUE	0	1	0	1	1	FALSE	ACH-000921
NCIH1339_LUNG	MATR3--CTNNA1	1	1	MATR3	9772	chr5:138629494:+	CTNNA1	57245	chr5:138221901:+	ONLY_REF_SPLICE	YES	69	989	0.03	0	0.0121	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	NCIH1339_LUNG	0	0.03	0.0242	FALSE	2	3	0	5	0	FALSE	ACH-000921
NCIH1339_LUNG	NF1--HINT1	1	1	NF1	43661	chr17:29653270:+	HINT1	82966	chr5:130495304:-	ONLY_REF_SPLICE	YES	128	1463	0.02	0	0.0121	0.0121	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,HINT1->chr5:130494720-130507428:-,histidine_triad_nucleotide_binding_protein_1	NCIH1339_LUNG	0	0.02	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	PCM1--RHOBTB1	1	1	PCM1	36335	chr8:17851128:+	RHOBTB1	57293	chr10:62648943:-	ONLY_REF_SPLICE	YES	71	8	0.03	0.2	0.0121	0.0121	PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1,RHOBTB1->Oncogene{Bushman},Rho_related_BTB_domain_containing_1,chr10:62629196-62761198:-	NCIH1339_LUNG	0.03	0.2	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000921
NCIH1339_LUNG	RBPJ--RP11-302F12.3	1	1	RBPJ	9966	chr4:26364250:+	RP11-302F12.3	31784	chr4:25610333:+	ONLY_REF_SPLICE	YES	48	0	0.04	1	0.0121	0.0121	RBPJ->chr4:26165077-26436541:+,recombination_signal_binding_protein_for_immunoglobulin_kappa_J_region,RP11-302F12.3->chr4:25610333-25621087:+	NCIH1339_LUNG	0.04	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000921
NCIH1339_LUNG	RORA--ANXA2	1	1	RORA	1267	chr15:61521252:-	ANXA2	59082	chr15:60656722:-	ONLY_REF_SPLICE	YES	8	5604	0.2	0	0.0121	0.0121	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	NCIH1339_LUNG	0	0.2	0.0242	FALSE	0	1	0	4	0	FALSE	ACH-000921
NCIH1339_LUNG	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0.0121	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1339_LUNG	1	1	0.0242	FALSE	416	2512	207	587	0	FALSE	ACH-000921
NCIH1339_LUNG	RP11-6N13.1--CTD-2374C24.1	1	1	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	20885	chr5:104311586:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0.0121	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH1339_LUNG	1	1	0.0242	TRUE	1	2	0	8	1	FALSE	ACH-000921
NCIH1339_LUNG	WDFY2--RNASEH2B	1	1	WDFY2	3459	chr13:52249379:+	RNASEH2B	23314	chr13:51503611:+	ONLY_REF_SPLICE	YES	171	168	0.01	0.01	0.0121	0.0121	WDFY2->WD_repeat_and_FYVE_domain_containing_2,chr13:52158644-52336171:+,RNASEH2B->chr13:51483814-51544592:+,ribonuclease_H2_subunit_B	NCIH1339_LUNG	0.01	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000921
TE15_OESOPHAGUS	TRMT10C--SMC6	640	222	TRMT10C	1142	chr3:101280847:+	SMC6	41595	chr2:17851842:-	ONLY_REF_SPLICE	YES	105	37	0.89	0.96	7.6175	2.6423	TRMT10C->chr3:101280706-101285290:+,tRNA_methyltransferase_10C,_mitochondrial_RNase_P_subunit,SMC6->chr2:17845079-17981509:-,structural_maintenance_of_chromosomes_6	TE15_OESOPHAGUS	0.89	0.96	10.2598	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	TUFT1--PBXIP1	472	141	TUFT1	1122	chr1:151512902:+	PBXIP1	19032	chr1:154926233:-	ONLY_REF_SPLICE	YES	15	0	0.98	1	5.6179	1.6782	TUFT1->chr1:151512781-151556059:+,tuftelin_1,PBXIP1->chr1:154916552-154928599:-,pre-B-cell_leukemia_homeobox_interacting_protein_1	TE15_OESOPHAGUS	0.98	1	7.2961	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	TIMM23B--LINC00843	88	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0474	0.1309	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TE15_OESOPHAGUS	0.99	1	1.1783	TRUE	508	994	45	981	0	FALSE	ACH-000353
TE15_OESOPHAGUS	TIMM23--RP11-464F9.1	59	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	189	3	0.25	0.96	0.7022	0.0595	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TE15_OESOPHAGUS	0.25	0.96	0.7617	TRUE	519	3926	326	965	0	FALSE	ACH-000353
TE15_OESOPHAGUS	TUFT1--PBXIP1	36	94	TUFT1	1122	chr1:151512902:+	PBXIP1	20119	chr1:154924397:-	ONLY_REF_SPLICE	YES	15	21	0.9	0.86	0.4285	1.1188	TUFT1->chr1:151512781-151556059:+,tuftelin_1,PBXIP1->chr1:154916552-154928599:-,pre-B-cell_leukemia_homeobox_interacting_protein_1	TE15_OESOPHAGUS	0.86	0.9	1.5473	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	TRMT10C--SMC6	1	222	TRMT10C	1248	chr3:101280953:+	SMC6	41595	chr2:17851842:-	ONLY_REF_SPLICE	YES	127	37	0.64	0.86	0.0119	2.6423	TRMT10C->chr3:101280706-101285290:+,tRNA_methyltransferase_10C,_mitochondrial_RNase_P_subunit,SMC6->chr2:17845079-17981509:-,structural_maintenance_of_chromosomes_6	TE15_OESOPHAGUS	0.64	0.86	2.6542	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	FLNB--SLC11A2	49	29	FLNB	1457	chr3:57994583:+	SLC11A2	61407	chr12:51404549:-	ONLY_REF_SPLICE	YES	107	7	0.42	0.92	0.5832	0.3452	FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B,SLC11A2->chr12:51373184-51422349:-,solute_carrier_family_11_member_2	TE15_OESOPHAGUS	0.42	0.92	0.9284	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	TRMT10C--SMC6	7	193	TRMT10C	1142	chr3:101280847:+	SMC6	41601	chr2:17851836:-	INCL_NON_REF_SPLICE	YES	105	37	0.66	0.84	0.0833	2.2972	TRMT10C->chr3:101280706-101285290:+,tRNA_methyltransferase_10C,_mitochondrial_RNase_P_subunit,SMC6->chr2:17845079-17981509:-,structural_maintenance_of_chromosomes_6	TE15_OESOPHAGUS	0.66	0.84	2.3805	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	ATXN7--DAZAP2	39	14	ATXN7	12346	chr3:63968697:+	DAZAP2	28820	chr12:51634127:+	ONLY_REF_SPLICE	YES	17	55	0.76	0.49	0.4642	0.1666	ATXN7->ataxin_7,chr3:63850233-63989138:+,DAZAP2->DAZ_associated_protein_2,chr12:51632076-51665146:+	TE15_OESOPHAGUS	0.49	0.76	0.6308	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	RP11-123O10.4--GRIP1	36	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4285	0.0714	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TE15_OESOPHAGUS	1	1	0.4999	FALSE	416	2512	207	587	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO2	33	7	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	48	14	0.45	0.74	0.3928	0.0833	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE15_OESOPHAGUS	0.45	0.74	0.4761	FALSE	59	21	0	114	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND6--MT-TE	29	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3452	0.0238	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE15_OESOPHAGUS	1	1	0.369	FALSE	499	1288	110	792	0	FALSE	ACH-000353
TE15_OESOPHAGUS	ZNF654--HMGB2	25	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2976	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TE15_OESOPHAGUS	1	1	0.2976	TRUE	0	0	0	518	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND6--MT-TE	20	18	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.238	0.2142	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE15_OESOPHAGUS	0.88	1	0.4522	FALSE	499	1288	110	792	0	FALSE	ACH-000353
TE15_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	20	7	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	2	0	0.93	1	0.238	0.0833	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	TE15_OESOPHAGUS	0.93	1	0.3213	FALSE	20	187	4	79	0	FALSE	ACH-000353
TE15_OESOPHAGUS	LARGE--MOB1B	18	10	LARGE	8508	chr22:34157358:-	MOB1B	43276	chr4:71835648:+	ONLY_REF_SPLICE	YES	20	14	0.58	0.67	0.2142	0.119	LARGE->chr22:33558212-34318829:-,like-glycosyltransferase,MOB1B->MOB_kinase_activator_1B,chr4:71768043-71888166:+	TE15_OESOPHAGUS	0.58	0.67	0.3332	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	20	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	14600	7	0	0.75	0.238	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.75	0.2499	FALSE	230	193	14	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO2	16	3	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	29	3	0.4	0.86	0.1904	0.0357	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE15_OESOPHAGUS	0.4	0.86	0.2261	FALSE	59	21	0	114	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO2	15	6	MT-ATP6	1516	chrM:9042:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	8	4	0.72	0.84	0.1785	0.0714	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE15_OESOPHAGUS	0.72	0.84	0.2499	FALSE	59	21	0	114	0	FALSE	ACH-000353
TE15_OESOPHAGUS	TUFT1--PBXIP1	4	50	TUFT1	1122	chr1:151512902:+	PBXIP1	20505	chr1:154924011:-	ONLY_REF_SPLICE	YES	15	64	0.78	0.46	0.0476	0.5951	TUFT1->chr1:151512781-151556059:+,tuftelin_1,PBXIP1->chr1:154916552-154928599:-,pre-B-cell_leukemia_homeobox_interacting_protein_1	TE15_OESOPHAGUS	0.46	0.78	0.6427	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	MT-TA--MT-TC	15	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1785	0.0595	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE15_OESOPHAGUS	1	1	0.238	FALSE	462	80	0	856	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	15	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17332	8	0	0.67	0.1785	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.67	0.1904	FALSE	231	205	14	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO2	13	7	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	48	10	0.29	0.67	0.1547	0.0833	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE15_OESOPHAGUS	0.29	0.67	0.238	FALSE	59	21	0	114	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND6--MT-TE	14	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1666	0.0119	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE15_OESOPHAGUS	1	1	0.1785	FALSE	499	1288	110	792	0	FALSE	ACH-000353
TE15_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	13	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1547	0.0595	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE15_OESOPHAGUS	0.95	1	0.2142	FALSE	515	4851	409	746	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	11	11	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	16264	194	0	0.1	0.1309	0.1309	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.1	0.2618	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	TUFT1--PBXIP1	10	15	TUFT1	1122	chr1:151512902:+	PBXIP1	21847	chr1:154920842:-	ONLY_REF_SPLICE	YES	15	120	0.62	0.17	0.119	0.1785	TUFT1->chr1:151512781-151556059:+,tuftelin_1,PBXIP1->chr1:154916552-154928599:-,pre-B-cell_leukemia_homeobox_interacting_protein_1	TE15_OESOPHAGUS	0.17	0.62	0.2975	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO2	12	5	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	76	4	0.18	0.81	0.1428	0.0595	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE15_OESOPHAGUS	0.18	0.81	0.2023	FALSE	59	21	0	114	0	FALSE	ACH-000353
TE15_OESOPHAGUS	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1547	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TE15_OESOPHAGUS	1	1	0.1547	TRUE	0	0	0	434	0	FALSE	ACH-000353
TE15_OESOPHAGUS	TUFT1--PBXIP1	5	31	TUFT1	1122	chr1:151512902:+	PBXIP1	20643	chr1:154923873:-	ONLY_REF_SPLICE	YES	15	95	0.71	0.27	0.0595	0.369	TUFT1->chr1:151512781-151556059:+,tuftelin_1,PBXIP1->chr1:154916552-154928599:-,pre-B-cell_leukemia_homeobox_interacting_protein_1	TE15_OESOPHAGUS	0.27	0.71	0.4285	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	12	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14605	8	0	0.62	0.1428	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.62	0.1547	FALSE	230	198	14	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	C15orf57--CBX3	10	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	45	70	0.25	0.18	0.119	0.0595	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TE15_OESOPHAGUS	0.18	0.25	0.1785	TRUE	267	562	48	632	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	7	14	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	16962	0	0	1	0.0833	0.1666	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	1	0.2499	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND6--MT-TE	4	26	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.0476	0.3095	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE15_OESOPHAGUS	0.88	1	0.3571	FALSE	499	1288	110	792	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	7	11	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16264	62	0	0.23	0.0833	0.1309	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.23	0.2142	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO1	9	2	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	10436	25623	0	0	0.1071	0.0238	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE15_OESOPHAGUS	0	0	0.1309	FALSE	183	104	9	328	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	9	2	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	19029	0	0	1	0.1071	0.0238	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	1	0.1309	FALSE	231	205	14	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND6--MT-TE	3	26	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0357	0.3095	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE15_OESOPHAGUS	0.97	1	0.3452	FALSE	499	1288	110	792	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO2	7	9	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	48	7	0.25	0.7	0.0833	0.1071	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE15_OESOPHAGUS	0.25	0.7	0.1904	FALSE	59	21	0	114	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO2	7	8	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	45	9	0.25	0.62	0.0833	0.0952	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE15_OESOPHAGUS	0.25	0.62	0.1785	FALSE	59	21	0	114	0	FALSE	ACH-000353
TE15_OESOPHAGUS	RP11-114H23.1--RP11-114H23.2	7	7	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0833	0.0833	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	TE15_OESOPHAGUS	0.88	1	0.1666	FALSE	81	155	12	160	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	6	9	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	20524	0	0	1	0.0714	0.1071	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	1	0.1785	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	NRIP1--AF127936.7	8	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.64	1	0.0952	0.0119	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TE15_OESOPHAGUS	0.64	1	0.1071	FALSE	292	1546	117	613	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO1	7	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	12396	25705	0	0	0.0833	0.0476	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE15_OESOPHAGUS	0	0	0.1309	FALSE	183	104	9	328	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO2	3	20	MT-ATP6	1575	chrM:9101:+	MT-CO2	4747	chrM:7651:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0.238	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE15_OESOPHAGUS	1	1	0.2737	FALSE	59	21	0	114	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	5	12	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15589	62	0	0.22	0.0595	0.1428	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.22	0.2023	FALSE	231	215	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO2	7	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	24	7	0.29	0.59	0.0833	0.0357	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE15_OESOPHAGUS	0.29	0.59	0.119	FALSE	59	21	0	114	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	6	7	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	21698	503	0	0.03	0.0714	0.0833	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.03	0.1547	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	6	7	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	18905	1470	0	0.01	0.0714	0.0833	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.01	0.1547	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	6	7	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21082	62	0	0.17	0.0714	0.0833	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.17	0.1547	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO1	7	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	10878	27754	0	0	0.0833	0.0238	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE15_OESOPHAGUS	0	0	0.1071	FALSE	183	104	9	328	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO2	5	10	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	48	7	0.24	0.68	0.0595	0.119	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE15_OESOPHAGUS	0.24	0.68	0.1785	FALSE	59	21	0	114	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	5	10	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	20620	0	0	1	0.0595	0.119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	1	0.1785	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	CTA-714B7.5--ANO1	6	5	CTA-714B7.5	4248	chr22:35567428:-	ANO1	21815	chr11:69978025:+	ONLY_REF_SPLICE	YES	0	98	1	0.1	0.0714	0.0595	CTA-714B7.5->chr22:35515817-35627049:-,ANO1->anoctamin_1,chr11:69924408-70035634:+	TE15_OESOPHAGUS	0.1	1	0.1309	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	GPR116--TNFRSF21	6	5	GPR116	25032	chr6:46823711:-	TNFRSF21	38435	chr6:47200730:-	ONLY_REF_SPLICE	YES	0	246	1	0.04	0.0714	0.0595	GPR116->chr6:46820249-46922680:-,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	TE15_OESOPHAGUS	0.04	1	0.1309	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	17	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	15677	0	0	1	0.0357	0.2023	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	1	0.238	FALSE	231	215	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-TA--MT-TC	6	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0714	0.0595	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE15_OESOPHAGUS	1	1	0.1309	FALSE	462	80	0	856	0	FALSE	ACH-000353
TE15_OESOPHAGUS	ALOX15--UBE2G1	6	4	ALOX15	8396	chr17:4536156:-	UBE2G1	18133	chr17:4210418:-	ONLY_REF_SPLICE	YES	5	50	0.67	0.17	0.0714	0.0476	ALOX15->Oncogene{Bushman},arachidonate_15-lipoxygenase,chr17:4534197-4545589:-,UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1	TE15_OESOPHAGUS	0.17	0.67	0.119	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO1	5	8	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	12396	0	0	1	0.0595	0.0952	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE15_OESOPHAGUS	0	1	0.1547	FALSE	182	97	9	327	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO2	5	8	MT-ATP6	1141	chrM:8667:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	41	9	0.24	0.59	0.0595	0.0952	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE15_OESOPHAGUS	0.24	0.59	0.1547	FALSE	59	21	0	114	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0833	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE15_OESOPHAGUS	1	1	0.0833	FALSE	499	1288	110	792	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	4	11	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18426	0	0	1	0.0476	0.1309	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	1	0.1785	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	5	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	18833	841	0	0.01	0.0595	0.0833	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.01	0.1428	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	NRIP1--AF127936.7	6	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.26	1	0.0714	0.0357	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TE15_OESOPHAGUS	0.26	1	0.1071	FALSE	125	705	46	456	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	14	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	18090	0	0	1	0.0357	0.1666	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	1	0.2023	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	4	9	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20620	0	0	1	0.0476	0.1071	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	1	0.1547	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	4	9	MT-ND4	1824	chrM:11583:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18693	8	0	0.62	0.0476	0.1071	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.62	0.1547	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	13	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18142	0	0	1	0.0357	0.1547	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	1	0.1904	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	4	9	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	20429	0	0	1	0.0476	0.1071	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	1	0.1547	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	4	9	MT-ND4	1754	chrM:11513:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	18426	82	0	0.14	0.0476	0.1071	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.14	0.1547	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	YWHAE--CRK	6	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	2588	130	0	0.05	0.0714	0.0119	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	TE15_OESOPHAGUS	0	0.05	0.0833	FALSE	6	50	7	115	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO2	5	4	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	29	10	0.24	0.47	0.0595	0.0476	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE15_OESOPHAGUS	0.24	0.47	0.1071	FALSE	59	21	0	114	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	12	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4976	62	0	0.19	0.0357	0.1428	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.19	0.1785	FALSE	218	210	16	281	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO2	5	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	24	4	0.25	0.67	0.0595	0.0357	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE15_OESOPHAGUS	0.25	0.67	0.0952	FALSE	59	21	0	114	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	11	MT-ND4	1546	chrM:11305:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	22212	0	0	1	0.0357	0.1309	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	1	0.1666	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	11	MT-ND4	1998	chrM:11757:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17059	8	0	0.64	0.0357	0.1309	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.64	0.1666	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	11	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	18805	0	0	1	0.0357	0.1309	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	1	0.1666	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	ARHGAP24--RP11-1145L24.1	5	1	ARHGAP24	19993	chr4:86898844:+	RP11-1145L24.1	29507	chr8:73787438:-	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0595	0.0119	ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+,RP11-1145L24.1->chr8:73787094-73793975:-	TE15_OESOPHAGUS	0.67	1	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	9	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	18561	0	0	1	0.0357	0.1071	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	1	0.1428	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	9	MT-ND4	1453	chrM:11212:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	21011	0	0	1	0.0357	0.1071	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	1	0.1428	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	9	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18833	8	0	0.6	0.0357	0.1071	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.6	0.1428	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	9	MT-ND4	1925	chrM:11684:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	YES	17618	264	0	0.04	0.0357	0.1071	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.04	0.1428	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	9	MT-ND4	1741	chrM:11500:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	18586	1	0	0.92	0.0357	0.1071	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.92	0.1428	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	AEBP2--RP11-405A12.2	5	0	AEBP2	15624	chr12:19873625:+	RP11-405A12.2	19888	chr12:20076132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0595	0	NEIGHBORS[54650],AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,RP11-405A12.2->chr12:19928385-20162871:+	TE15_OESOPHAGUS	1	1	0.0595	FALSE	0	0	0	8	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO2	4	4	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	28	8	0.22	0.5	0.0476	0.0476	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE15_OESOPHAGUS	0.22	0.5	0.0952	FALSE	59	21	0	114	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	8	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	22212	743	0	0.01	0.0357	0.0952	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.01	0.1309	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	8	MT-ND4	1566	chrM:11325:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	21576	503	0	0.02	0.0357	0.0952	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.02	0.1309	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0595	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE15_OESOPHAGUS	1	1	0.0595	FALSE	499	1288	110	792	0	FALSE	ACH-000353
TE15_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	3	7	CTD-2008L17.1	3828	chr18:53685010:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0357	0.0833	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	TE15_OESOPHAGUS	0.91	1	0.119	FALSE	1	24	0	14	0	FALSE	ACH-000353
TE15_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	4	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0476	0.0357	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	TE15_OESOPHAGUS	0.78	1	0.0833	FALSE	33	240	4	98	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO1	4	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12396	28100	0	0	0.0476	0.0357	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE15_OESOPHAGUS	0	0	0.0833	FALSE	183	104	9	328	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO2	3	7	MT-ATP6	1567	chrM:9093:+	MT-CO2	4964	chrM:7868:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.62	0.0357	0.0833	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE15_OESOPHAGUS	0.62	1	0.119	FALSE	59	21	0	114	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	7	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	17956	785	0	0.01	0.0357	0.0833	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.01	0.119	FALSE	231	217	16	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	RP11-120D5.1--MID1	4	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	53	0.7	0.12	0.0476	0.0357	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	TE15_OESOPHAGUS	0.12	0.7	0.0833	FALSE	16	356	14	466	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO1	4	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10984	28228	0	0	0.0476	0.0238	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE15_OESOPHAGUS	0	0	0.0714	FALSE	183	104	9	328	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	4	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14600	8	0	0.38	0.0476	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.38	0.0595	FALSE	230	193	14	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	4	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	14781	82	0	0.06	0.0476	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.06	0.0595	FALSE	231	204	14	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	4	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14664	62	0	0.07	0.0476	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.07	0.0595	FALSE	230	198	14	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	4	1	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	8707	503	0	0.01	0.0476	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.01	0.0595	FALSE	230	193	14	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	RAB11A--TIPIN	4	1	RAB11A	6847	chr15:66161963:+	TIPIN	21387	chr15:66649053:-	INCL_NON_REF_SPLICE	YES	343	0	0.01	1	0.0476	0.0119	RAB11A->RAB11A,_member_RAS_oncogene_family,chr15:66018392-66184329:+,TIPIN->TIMELESS_interacting_protein,chr15:66628544-66679084:-	TE15_OESOPHAGUS	0.01	1	0.0595	FALSE	0	0	0	1	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO1	3	4	MT-ATP6	1530	chrM:9056:+	MT-CO1	5890	chrM:7112:+	INCL_NON_REF_SPLICE	YES	5348	24011	0	0	0.0357	0.0476	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE15_OESOPHAGUS	0	0	0.0833	FALSE	183	104	9	328	0	FALSE	ACH-000353
TE15_OESOPHAGUS	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0476	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TE15_OESOPHAGUS	1	1	0.0476	TRUE	0	0	0	434	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO1	3	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5956	chrM:7178:+	INCL_NON_REF_SPLICE	YES	3673	18158	0	0	0.0357	0.0357	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE15_OESOPHAGUS	0	0	0.0714	FALSE	183	104	9	328	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO1	3	3	MT-ATP6	1121	chrM:8647:+	MT-CO1	4698	chrM:5920:+	INCL_NON_REF_SPLICE	YES	10914	0	0	1	0.0357	0.0357	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE15_OESOPHAGUS	0	1	0.0714	FALSE	182	97	9	327	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO2	3	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	24	7	0.2	0.46	0.0357	0.0357	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE15_OESOPHAGUS	0.2	0.46	0.0714	FALSE	59	21	0	114	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO2	3	3	MT-ATP6	1123	chrM:8649:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	29	4	0.17	0.6	0.0357	0.0357	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE15_OESOPHAGUS	0.17	0.6	0.0714	FALSE	59	21	0	114	0	FALSE	ACH-000353
TE15_OESOPHAGUS	FTH1--ACTB	3	2	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	5095	2	0	0.71	0.0357	0.0238	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	TE15_OESOPHAGUS	0	0.71	0.0595	FALSE	1	0	0	97	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO1	3	2	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	10827	25357	0	0	0.0357	0.0238	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE15_OESOPHAGUS	0	0	0.0595	FALSE	183	104	9	328	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO1	3	2	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	11108	25129	0	0	0.0357	0.0238	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE15_OESOPHAGUS	0	0	0.0595	FALSE	183	104	9	328	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	19021	1	0	0.83	0.0357	0.0238	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.83	0.0595	FALSE	231	205	14	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19021	62	0	0.07	0.0357	0.0238	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	0.07	0.0595	FALSE	231	205	14	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	ATXN7--THOC7	3	1	ATXN7	3640	chr3:63884173:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	YES	0	13	1	0.24	0.0357	0.0119	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	TE15_OESOPHAGUS	0.24	1	0.0476	TRUE	0	2	0	5	2	TRUE	ACH-000353
TE15_OESOPHAGUS	MT-ATP6--MT-CO1	3	1	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	13140	17692	0	0	0.0357	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE15_OESOPHAGUS	0	0	0.0476	FALSE	183	104	9	328	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	14781	0	0	1	0.0357	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	1	0.0476	FALSE	231	204	14	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	1	MT-ND4	1222	chrM:10981:+	MT-ATP8	5406	chrM:8393:+	INCL_NON_REF_SPLICE	YES	14873	0	0	1	0.0357	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	1	0.0476	FALSE	231	204	14	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MT-ND4--MT-ATP8	3	1	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	14577	0	0	1	0.0357	0.0119	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE15_OESOPHAGUS	0	1	0.0476	FALSE	230	197	14	283	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MTAP--DMRTA1	3	1	MTAP	7556	chr9:21818201:+	DMRTA1	25056	chr9:22451063:+	ONLY_REF_SPLICE	YES	0	2	1	0.67	0.0357	0.0119	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	TE15_OESOPHAGUS	0.67	1	0.0476	TRUE	0	1	0	2	0	TRUE	ACH-000353
TE15_OESOPHAGUS	RAB11A--TIPIN	3	1	RAB11A	6847	chr15:66161963:+	TIPIN	22464	chr15:66645293:-	ONLY_REF_SPLICE	YES	343	3	0.01	0.57	0.0357	0.0119	RAB11A->RAB11A,_member_RAS_oncogene_family,chr15:66018392-66184329:+,TIPIN->TIMELESS_interacting_protein,chr15:66628544-66679084:-	TE15_OESOPHAGUS	0.01	0.57	0.0476	FALSE	0	0	0	1	0	FALSE	ACH-000353
TE15_OESOPHAGUS	TUFT1--PMVK	3	1	TUFT1	1122	chr1:151512902:+	PMVK	19378	chr1:154904891:-	ONLY_REF_SPLICE	YES	15	131	0.21	0.03	0.0357	0.0119	TUFT1->chr1:151512781-151556059:+,tuftelin_1,PMVK->chr1:154897210-154909467:-,phosphomevalonate_kinase	TE15_OESOPHAGUS	0.03	0.21	0.0476	TRUE	0	0	0	1	0	FALSE	ACH-000353
TE15_OESOPHAGUS	FTH1--ACTB	3	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	TE15_OESOPHAGUS	1	1	0.0357	TRUE	1	0	0	97	0	FALSE	ACH-000353
TE15_OESOPHAGUS	RP11-123O10.4--GRIP1	1	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0119	0.0714	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TE15_OESOPHAGUS	1	1	0.0833	FALSE	9	21	5	22	0	FALSE	ACH-000353
TE15_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0119	0.0714	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE15_OESOPHAGUS	0.88	1	0.0833	FALSE	407	2205	196	549	0	FALSE	ACH-000353
TE15_OESOPHAGUS	RP11-108K3.1--GLDN	2	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0.0119	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	TE15_OESOPHAGUS	1	1	0.0357	FALSE	0	30	1	55	0	FALSE	ACH-000353
TE15_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	0	0.86	1	0.0119	0.0595	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE15_OESOPHAGUS	0.86	1	0.0714	FALSE	467	2173	244	435	0	FALSE	ACH-000353
TE15_OESOPHAGUS	AC009961.3--BAZ2B	1	4	AC009961.3	2693	chr2:160567228:-	BAZ2B	23709	chr2:160310312:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0119	0.0476	NEIGHBORS[54016],AC009961.3->chr2:160527219-160568946:-,BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-	TE15_OESOPHAGUS	1	1	0.0595	FALSE	0	0	0	1	0	FALSE	ACH-000353
TE15_OESOPHAGUS	AGTPBP1--PRRC2B	2	0	AGTPBP1	8702	chr9:88284400:-	PRRC2B	34945	chr9:134305477:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	AGTPBP1->ATP/GTP_binding_protein_1,chr9:88161455-88356944:-,PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B	TE15_OESOPHAGUS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	ATXN7--DAZAP2	2	0	ATXN7	12346	chr3:63968697:+	DAZAP2	34855	chr12:51664502:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	ATXN7->ataxin_7,chr3:63850233-63989138:+,DAZAP2->DAZ_associated_protein_2,chr12:51632076-51665146:+	TE15_OESOPHAGUS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	C12orf60--ATF7IP	2	0	C12orf60	1180	chr12:14956685:+	ATF7IP	35097	chr12:14619460:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	C12orf60->chr12:14956506-15059520:+,chromosome_12_open_reading_frame_60,ATF7IP->Oncogene{Bushman},activating_transcription_factor_7_interacting_protein,chr12:14518610-14651697:+	TE15_OESOPHAGUS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	C17orf62--FOXK2	2	0	C17orf62	1130	chr17:80408576:-	FOXK2	28519	chr17:80559179:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	LOCAL_INVERSION:-:+:[68884],C17orf62->chr17:80400465-80408705:-,chromosome_17_open_reading_frame_62,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	TE15_OESOPHAGUS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	TE15_OESOPHAGUS	1	1	0.0238	TRUE	347	1186	183	220	0	FALSE	ACH-000353
TE15_OESOPHAGUS	TUFT1--PBXIP1	1	3	TUFT1	1122	chr1:151512902:+	PBXIP1	22501	chr1:154920188:-	ONLY_REF_SPLICE	NO	15	94	0.21	0.04	0.0119	0.0357	TUFT1->chr1:151512781-151556059:+,tuftelin_1,PBXIP1->chr1:154916552-154928599:-,pre-B-cell_leukemia_homeobox_interacting_protein_1	TE15_OESOPHAGUS	0.04	0.21	0.0476	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	AC009961.3--BAZ2B	1	2	AC009961.3	2693	chr2:160567228:-	BAZ2B	26066	chr2:160303486:-	ONLY_REF_SPLICE	YES	0	6	1	0.33	0.0119	0.0238	NEIGHBORS[54016],AC009961.3->chr2:160527219-160568946:-,BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-	TE15_OESOPHAGUS	0.33	1	0.0357	FALSE	0	0	0	1	0	FALSE	ACH-000353
TE15_OESOPHAGUS	LARGE--MOB1B	1	2	LARGE	2799	chr22:34315983:-	MOB1B	43276	chr4:71835648:+	ONLY_REF_SPLICE	YES	19	14	0.14	0.18	0.0119	0.0238	LARGE->chr22:33558212-34318829:-,like-glycosyltransferase,MOB1B->MOB_kinase_activator_1B,chr4:71768043-71888166:+	TE15_OESOPHAGUS	0.14	0.18	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	C14orf37--ARID4A	1	1	C14orf37	2258	chr14:58758353:-	ARID4A	28688	chr14:58785260:+	ONLY_REF_SPLICE	NO	0	14	1	0.12	0.0119	0.0119	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_INVERSION:-:+:[246],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,ARID4A->AT-rich_interaction_domain_4A,Oncogene{Bushman},chr14:58765103-58840605:+	TE15_OESOPHAGUS	0.12	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000353
TE15_OESOPHAGUS	EMG1--GAS5	1	1	EMG1	2414	chr12:7080253:+	GAS5	15685	chr1:173835090:-	ONLY_REF_SPLICE	NO	490	1391	0	0	0.0119	0.0119	EMG1->EMG1_N1-specific_pseudouridine_methyltransferase,chr12:7072408-7105520:+,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	TE15_OESOPHAGUS	0	0	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000353
TE15_OESOPHAGUS	MINOS1--CAPZB	1	1	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	NO	141	73	0.01	0.03	0.0119	0.0119	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	TE15_OESOPHAGUS	0.01	0.03	0.0238	FALSE	2	7	0	21	0	FALSE	ACH-000353
TE15_OESOPHAGUS	REV3L--PERP	1	1	REV3L	1966	chr6:111803953:-	PERP	50489	chr6:138417631:-	ONLY_REF_SPLICE	YES	10	1745	0.17	0	0.0119	0.0119	REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,PERP->PERP,_TP53_apoptosis_effector,chr6:138409642-138428648:-	TE15_OESOPHAGUS	0	0.17	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000353
TE15_OESOPHAGUS	RPRD2--TNNT1	1	1	RPRD2	4855	chr1:150390201:+	TNNT1	26543	chr19:55658075:-	ONLY_REF_SPLICE	YES	83	169	0.02	0.01	0.0119	0.0119	RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,TNNT1->chr19:55644162-55660722:-,troponin_T1,_slow_skeletal_type	TE15_OESOPHAGUS	0.01	0.02	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000353
TE15_OESOPHAGUS	THRAP3--RP11-1407O15.2	1	1	THRAP3	3151	chr1:36725085:+	RP11-1407O15.2	22582	chr17:36398302:-	ONLY_REF_SPLICE	YES	184	220	0.01	0.01	0.0119	0.0119	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,RP11-1407O15.2->chr17:36337717-36421858:-	TE15_OESOPHAGUS	0.01	0.01	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000353
TE15_OESOPHAGUS	VPS13D--SRSF11	1	1	VPS13D	76595	chr1:12476880:+	SRSF11	92704	chr1:70687298:+	ONLY_REF_SPLICE	YES	31	81	0.06	0.02	0.0119	0.0119	VPS13D->chr1:12290124-12572099:+,vacuolar_protein_sorting_13_homolog_D,SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11	TE15_OESOPHAGUS	0.02	0.06	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000353
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JKAMP--TRAV35	204	68	JKAMP	4386	chr14:59954546:+	TRAV35	14096	chr14:22690088:+	ONLY_REF_SPLICE	YES	60	0	0.82	1	2.2393	0.7464	JKAMP->JNK1/MAPK8-associated_membrane_protein,chr14:59951161-59972128:+,TRAV35->T_cell_receptor_alpha_variable_35,chr14:22689792-22690371:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	2.9857	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	129	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.416	0.2854	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.7014	TRUE	508	994	45	981	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2G1--ZZEF1	112	41	UBE2G1	5880	chr17:4210316:-	ZZEF1	52131	chr17:3957489:-	ONLY_REF_SPLICE	YES	0	4	1	0.97	1.2294	0.4501	{Klijn_CCL:Ovary=1,Lymphoid=1},UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	1.6795	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	96	32	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	17	0	0.88	1	1.0538	0.3513	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	1.4051	FALSE	20	187	4	79	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-344E13.3--UBBP4	71	100	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	0	20	1	0.9	0.7794	1.0977	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	1.8771	TRUE	23	13	0	54	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A2--PTMA	91	0	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9989	0	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9989	TRUE	0	0	0	10	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	81	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	124	16	0.4	0.84	0.8891	0.022	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.84	0.9111	TRUE	519	3926	326	965	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF3A1--CTA-85E5.10	68	34	SF3A1	3954	chr22:30742301:-	CTA-85E5.10	23716	chr22:30436267:-	ONLY_REF_SPLICE	YES	88	0	0.54	1	0.7464	0.3732	SF3A1->chr22:30727977-30752936:-,splicing_factor_3a_subunit_1,CTA-85E5.10->chr22:30404731-30476469:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	1	1.1196	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	65	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7135	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7135	TRUE	0	0	0	518	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	53	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5818	0.0659	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6477	FALSE	462	80	0	856	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2G1--ZZEF1	49	21	UBE2G1	5880	chr17:4210316:-	ZZEF1	53270	chr17:3955430:-	ONLY_REF_SPLICE	YES	0	27	1	0.72	0.5379	0.2305	{Klijn_CCL:Ovary=1,Lymphoid=1},UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	1	0.7684	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A2--KCNV1	50	14	SLC38A2	8190	chr12:46756804:-	KCNV1	20473	chr8:110980828:-	ONLY_REF_SPLICE	YES	590	0	0.1	1	0.5488	0.1537	{Klijn_CCL:Lymphoid=1},SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,KCNV1->chr8:110975874-110988076:-,potassium_voltage-gated_channel_modifier_subfamily_V_member_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.7025	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2G1--ZZEF1	39	50	UBE2G1	5880	chr17:4210316:-	ZZEF1	51001	chr17:3959639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4281	0.5488	{Klijn_CCL:Ovary=1,Lymphoid=1},UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9769	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	46	14	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	8	2	0.88	0.97	0.5049	0.1537	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.97	0.6586	FALSE	515	4851	409	746	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	37	39	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	69	18	0.52	0.81	0.4061	0.4281	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.81	0.8342	TRUE	267	562	48	632	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF2S1--CTD-2314B22.2	37	5	EIF2S1	3739	chr14:67831725:+	CTD-2314B22.2	17215	chr14:19850949:-	INCL_NON_REF_SPLICE	YES	118	0	0.26	1	0.4061	0.0549	EIF2S1->chr14:67826714-67853233:+,eukaryotic_translation_initiation_factor_2_subunit_alpha,CTD-2314B22.2->chr14:19832617-19857070:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.461	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	36	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3952	0.022	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4172	FALSE	499	1288	110	792	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	29	28	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	67	19	0.46	0.75	0.3183	0.3074	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.75	0.6257	TRUE	267	562	48	632	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC137932.6--ANKRD11	29	17	AC137932.6	2330	chr16:89389741:+	ANKRD11	40318	chr16:89335071:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3183	0.1866	NEIGHBORS_OVERLAP:+:-:[3977],AC137932.6->chr16:89387541-89391518:+,ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5049	FALSE	0	0	0	1	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	115	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	8	0	0.94	1	0.0439	1.2624	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	1.3063	FALSE	344	826	44	306	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF3A1--CTA-85E5.10	19	25	SF3A1	3954	chr22:30742301:-	CTA-85E5.10	24818	chr22:30414718:-	ONLY_REF_SPLICE	YES	88	2	0.33	0.96	0.2086	0.2744	SF3A1->chr22:30727977-30752936:-,splicing_factor_3a_subunit_1,CTA-85E5.10->chr22:30404731-30476469:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.96	0.483	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	18	15	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	8	0	0.8	1	0.1976	0.1647	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.3623	FALSE	407	2205	196	549	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	16	18	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.97	0.94	0.1756	0.1976	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	0.97	0.3732	FALSE	467	2173	244	435	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	18	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1976	0.0329	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2305	FALSE	499	1288	110	792	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EMC1--AKR7A3	16	9	EMC1	18024	chr1:19549118:-	AKR7A3	29740	chr1:19612866:-	ONLY_REF_SPLICE	YES	161	5	0.13	0.83	0.1756	0.0988	LOCAL_REARRANGEMENT:-:[31006],EMC1->ER_membrane_protein_complex_subunit_1,chr1:19542158-19578046:-,AKR7A3->aldo-keto_reductase_family_7,_member_A3_(aflatoxin_aldehyde_reductase),chr1:19609052-19615744:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.83	0.2744	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	14	15	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	17	2	0.63	0.94	0.1537	0.1647	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.94	0.3184	FALSE	33	240	4	98	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	14	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.1537	0.1317	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.2854	FALSE	499	1288	110	792	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A2--KCNV1	14	7	SLC38A2	7485	chr12:46757509:-	KCNV1	20473	chr8:110980828:-	ONLY_REF_SPLICE	YES	701	0	0.03	1	0.1537	0.0768	{Klijn_CCL:Lymphoid=1},SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,KCNV1->chr8:110975874-110988076:-,potassium_voltage-gated_channel_modifier_subfamily_V_member_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.2305	TRUE	0	0	0	1	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TC--MT-TY	5	40	MT-TC	1061	chrM:5766:-	MT-TY	4075	chrM:5883:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0.4391	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.494	FALSE	51	280	19	36	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TC--MT-TY	14	1	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1537	0.011	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1647	FALSE	51	280	19	36	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--SF3A2	14	1	OAZ1	1259	chr19:2269743:+	SF3A2	10392	chr19:2243381:+	ONLY_REF_SPLICE	YES	2550	8	0.01	0.65	0.1537	0.011	LOCAL_REARRANGEMENT:+:[20807],OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,SF3A2->chr19:2236520-2248678:+,splicing_factor_3a_subunit_2	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.65	0.1647	TRUE	0	0	0	2	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	12	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1317	0.0549	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1866	FALSE	462	80	0	856	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	3	35	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	8101	chr18:53709517:+	INCL_NON_REF_SPLICE	YES	17	1	0.69	0.97	0.0329	0.3842	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.97	0.4171	FALSE	0	1	0	2	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	11	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2006	0	0.01	1	0.1207	0.011	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1317	FALSE	13	9	0	364	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0878	0.1427	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2305	FALSE	499	1288	110	792	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	3	32	CTD-2008L17.1	3828	chr18:53685010:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	7	0	0.83	1	0.0329	0.3513	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.3842	FALSE	1	24	0	14	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1207	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1207	TRUE	0	0	0	434	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	11	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0878	0.1207	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2085	FALSE	499	1288	110	792	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	21	MT-ND4	1452	chrM:11211:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	249	0	0.09	1	0.0549	0.2305	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.2854	FALSE	344	827	44	306	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF3A1--CTA-85E5.10	1	37	SF3A1	3954	chr22:30742301:-	CTA-85E5.10	22429	chr22:30443900:-	ONLY_REF_SPLICE	YES	88	0	0.3	1	0.011	0.4061	SF3A1->chr22:30727977-30752936:-,splicing_factor_3a_subunit_1,CTA-85E5.10->chr22:30404731-30476469:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.4171	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	27	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	6371	0	0	1	0.0329	0.2964	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3293	FALSE	328	800	43	304	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF2S1--CTD-2314B22.2	8	5	EIF2S1	3739	chr14:67831725:+	CTD-2314B22.2	17156	chr14:19851008:-	INCL_NON_REF_SPLICE	YES	118	0	0.1	1	0.0878	0.0549	EIF2S1->chr14:67826714-67853233:+,eukaryotic_translation_initiation_factor_2_subunit_alpha,CTD-2314B22.2->chr14:19832617-19857070:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.1427	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	9	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0988	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0988	TRUE	0	0	0	100	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	12	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0.1317	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1976	FALSE	499	1288	110	792	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	8	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1404	0	0.01	1	0.0878	0.011	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0988	FALSE	0	0	0	189	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PABPC1--IGKV1-39	7	3	PABPC1	2381	chr8:101733657:-	IGKV1-39	18435	chr2:89619827:-	INCL_NON_REF_SPLICE	YES	1802	0	0.01	1	0.0768	0.0329	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene)	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1097	TRUE	0	0	0	1	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2G1--ZZEF1	5	11	UBE2G1	1358	chr17:4269566:-	ZZEF1	52131	chr17:3957489:-	ONLY_REF_SPLICE	YES	1	4	0.94	0.8	0.0549	0.1207	{Klijn_CCL:Ovary=1,Lymphoid=1},UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,ZZEF1->chr17:3907739-4046314:-,zinc_finger_ZZ-type_and_EF-hand_domain_containing_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.94	0.1756	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	7	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2016	0	0	1	0.0768	0.022	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0988	FALSE	13	9	0	364	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HLA-A--MT-ND1	7	1	HLA-A	2742	chr6:29910778:+	MT-ND1	8756	chrM:3437:+	INCL_NON_REF_SPLICE	YES	1517	2980	0.01	0	0.0768	0.011	HLA-A->chr6:29909037-29913661:+,major_histocompatibility_complex,_class_I,_A,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0878	FALSE	1	0	0	11	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.89	0.0768	0.011	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.0878	FALSE	344	821	44	306	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	6	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	1	0.69	0.92	0.0659	0.0549	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.92	0.1208	FALSE	16	356	14	466	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	15	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0329	0.1647	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.1976	FALSE	499	1288	110	792	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	19	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.022	0.2086	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2306	FALSE	192	492	57	212	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	6	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	1	0.67	0.89	0.0659	0.022	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.89	0.0879	FALSE	0	48	1	163	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TL1--MT-RNR2	4	9	MT-TL1	1104	chrM:3333:+	MT-RNR2	5603	chrM:3198:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0439	0.0988	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1427	FALSE	7	521	16	32	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL5	6	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0659	TRUE	0	0	0	39	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	4	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	1987	13574	0	0	0.0549	0.0439	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0988	FALSE	183	104	9	328	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0659	FALSE	499	1288	110	792	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0659	FALSE	462	80	0	856	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	5	3	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0.0329	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0878	TRUE	0	1	0	84	1	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0.1098	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1427	FALSE	462	80	0	856	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	4	6	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	5	1	0.67	0.91	0.0439	0.0659	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.91	0.1098	FALSE	0	9	0	55	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	5	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	10	1	0.38	0.0549	0.011	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.0659	FALSE	141	264	50	91	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	17	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	8	0	0.69	1	0.011	0.1866	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	0.1976	FALSE	275	511	55	178	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	5	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1393	0	0	1	0.0549	0.011	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0659	FALSE	0	0	0	189	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGDIA--MTATP6P1	5	0	ARHGDIA	3745	chr17:79826538:-	MTATP6P1	7952	chr1:569341:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0549	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LANCL1--AGAP1	4	4	LANCL1	10415	chr2:211300940:-	AGAP1	23814	chr2:236617823:+	ONLY_REF_SPLICE	YES	25	2	0.24	0.8	0.0439	0.0439	LANCL1->LanC_like_1,chr2:211295973-211342376:-,AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.8	0.0878	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TC--MT-TY	5	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0549	FALSE	51	280	19	36	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	4	3	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0.0329	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0768	TRUE	0	1	0	84	1	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	7	MT-ND6	1029	chrM:14645:-	MT-TE	4495	chrM:14773:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0.0768	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1097	FALSE	499	1288	110	792	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF3A1--CTA-85E5.10	2	11	SF3A1	3954	chr22:30742301:-	CTA-85E5.10	25931	chr22:30405185:-	ONLY_REF_SPLICE	YES	88	14	0.13	0.48	0.022	0.1207	SF3A1->chr22:30727977-30752936:-,splicing_factor_3a_subunit_1,CTA-85E5.10->chr22:30404731-30476469:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.48	0.1427	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-110I1.6--MT-ND4	4	1	RP11-110I1.6	2253	chr11:118916151:+	MT-ND4	5775	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	9277	1	0	0.0439	0.011	RP11-110I1.6->chr11:118914899-118916205:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0549	FALSE	0	0	0	4	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGDIA--MTATP6P1	4	0	ARHGDIA	3729	chr17:79826554:-	MTATP6P1	7936	chr1:569325:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0439	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	4	MT-ATP6	1537	chrM:9063:+	MT-CO1	5319	chrM:6541:+	INCL_NON_REF_SPLICE	YES	2591	13018	0	0	0.0329	0.0439	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0768	FALSE	183	104	9	328	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0.0439	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0768	FALSE	462	80	0	856	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0439	TRUE	0	0	0	434	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	4	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0439	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0439	TRUE	1	10	0	18	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	3	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0.0329	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0658	FALSE	499	1288	110	792	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	3	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0.0329	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0658	FALSE	462	80	0	856	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--SEC22B	3	1	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	177	307	0.02	0.01	0.0329	0.011	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0439	FALSE	49	42	7	43	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPLP2	3	0	EIF1	1072	chr17:39845208:+	RPLP2	8109	chr11:809971:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPLP2->chr11:809647-812880:+,ribosomal_protein_lateral_stalk_subunit_P2	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	TRUE	0	0	0	2	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1555	chrM:9081:+	MT-CO1	5956	chrM:7178:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	FALSE	183	104	9	328	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	FALSE	183	104	9	328	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	0	MT-ND4	1007	chrM:10766:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	FALSE	344	821	44	306	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	FALSE	499	1288	110	792	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4584	chrM:14684:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	FALSE	499	1288	110	792	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ITGB3BP	3	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	TRUE	0	6	0	9	2	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SETD8--CDK2AP1	3	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	TRUE	0	0	0	18	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUN2--IGH@	3	0	SUN2	15813	chr22:39134931:-	IGH@	119011	chr14:106321318:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	SUN2->Sad1_and_UNC84_domain_containing_2,chr22:39130730-39190148:-,IGH@->Oncogene{Bushman}	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	3	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0329	TRUE	0	0	0	518	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP1-34H18.1--NAV3	2	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0.022	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.044	TRUE	254	575	65	124	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2152M20.2--GOLPH3	2	1	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	29	1	0.09	0.022	0.011	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.033	TRUE	10	26	2	24	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACY1--NT5DC2	2	0	ACY1	4478	chr3:52018174:+	NT5DC2	17020	chr3:52563350:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	ACY1->aminoacylase_1,chr3:52009066-52023213:+,NT5DC2->5'-nucleotidase_domain_containing_2,chr3:52558386-52569070:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--INSR	2	0	DANCR	1530	chr4:53579126:+	INSR	8537	chr19:7267907:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,INSR->chr19:7112266-7294045:-,insulin_receptor	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAPK9--CANX	2	0	MAPK9	1252	chr5:179718848:-	CANX	32663	chr5:179132680:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},MAPK9->Oncogene{Bushman},chr5:179660143-179719099:-,mitogen-activated_protein_kinase_9,CANX->calnexin,chr5:179105629-179157926:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	FALSE	46	201	11	112	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP42--SUN1	2	0	USP42	21438	chr7:6196686:+	SUN1	51910	chr7:908986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	USP42->chr7:6144515-6201195:+,ubiquitin_specific_peptidase_42,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	FALSE	272	151	14	158	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A2--KCNV1	1	2	SLC38A2	7287	chr12:46757707:-	KCNV1	20473	chr8:110980828:-	ONLY_REF_SPLICE	YES	737	0	0	1	0.011	0.022	{Klijn_CCL:Lymphoid=1},SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,KCNV1->chr8:110975874-110988076:-,potassium_voltage-gated_channel_modifier_subfamily_V_member_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.033	FALSE	0	0	0	1	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMU1--B4GALT1	1	2	SMU1	6809	chr9:33060463:-	B4GALT1	25074	chr9:33120604:-	ONLY_REF_SPLICE	YES	44	2	0.06	0.6	0.011	0.022	LOCAL_REARRANGEMENT:-:[27415],SMU1->chr9:33041762-33076665:-,smu-1_suppressor_of_mec-8_and_unc-52_homolog_(C._elegans),B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.6	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASNSD1--GLS	1	1	ASNSD1	1226	chr2:190526336:+	GLS	24361	chr2:191792032:+	ONLY_REF_SPLICE	NO	78	273	0.03	0.01	0.011	0.011	ASNSD1->asparagine_synthetase_domain_containing_1,chr2:190526111-190535557:+,GLS->chr2:191745553-191830278:+,glutaminase	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C21orf90--SPCS3	1	1	C21orf90	1620	chr21:45937718:+	SPCS3	10951	chr4:177243321:+	ONLY_REF_SPLICE	YES	11	948	0.15	0	0.011	0.011	C21orf90->chr21:45937099-45945835:+,SPCS3->chr4:177241115-177253396:+,signal_peptidase_complex_subunit_3	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.15	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-340A15.2--CTC-207P7.1	1	1	CTC-340A15.2	1501	chr5:163724202:+	CTC-207P7.1	33816	chr5:163657454:-	ONLY_REF_SPLICE	YES	44	0	0.04	1	0.011	0.011	LOCAL_INVERSION:+:-:[62599],CTC-340A15.2->chr5:163723702-164598649:+,CTC-207P7.1->chr5:163546104-163661103:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-340A15.2--CTC-207P7.1	1	1	CTC-340A15.2	1501	chr5:163724202:+	CTC-207P7.1	34935	chr5:163621362:-	ONLY_REF_SPLICE	YES	44	0	0.04	1	0.011	0.011	LOCAL_INVERSION:+:-:[62599],CTC-340A15.2->chr5:163723702-164598649:+,CTC-207P7.1->chr5:163546104-163661103:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-432M15.3--HINT1	1	1	CTC-432M15.3	4409	chr5:130938964:-	HINT1	40535	chr5:130498369:-	ONLY_REF_SPLICE	YES	3	1493	0.4	0	0.011	0.011	CTC-432M15.3->chr5:130761584-131132676:-,HINT1->chr5:130494720-130507428:-,histidine_triad_nucleotide_binding_protein_1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.4	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EED--PICALM	1	1	EED	1800	chr11:85956385:+	PICALM	22249	chr11:85742653:-	ONLY_REF_SPLICE	YES	83	207	0.02	0.01	0.011	0.011	EED->chr11:85955586-85989855:+,embryonic_ectoderm_development,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.022	FALSE	0	0	0	3	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	5599	chr13:34098375:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	NO	2	10	0.5	0.17	0.011	0.011	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.5	0.022	FALSE	9	22	2	16	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	10	1	0.17	0.011	0.011	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.022	FALSE	49	120	16	70	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SFSWAP--NOC4L	1	1	SFSWAP	1367	chr12:132195992:+	NOC4L	35645	chr12:132635803:+	ONLY_REF_SPLICE	NO	104	41	0.02	0.05	0.011	0.011	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3]},SFSWAP->chr12:132195626-132284282:+,splicing_factor,_suppressor_of_white-apricot_homolog,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.022	TRUE	2	5	0	2	0	FALSE	ACH-000363
SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2D2--TFDP1	1	1	UBE2D2	6963	chr5:139003046:+	TFDP1	15329	chr13:114265311:+	ONLY_REF_SPLICE	YES	189	33	0.01	0.06	0.011	0.011	UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	SKMM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000363
RCC10RGB_KIDNEY	UPF3A--CDC16	135	58	UPF3A	4015	chr13:115052104:+	CDC16	26255	chr13:115027362:+	ONLY_REF_SPLICE	YES	68	120	0.74	0.62	1.0595	0.4552	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	RCC10RGB_KIDNEY	0.62	0.74	1.5147	TRUE	0	2	0	3	2	TRUE	ACH-000189
RCC10RGB_KIDNEY	UPF3A--CDC16	103	38	UPF3A	4015	chr13:115052104:+	CDC16	27247	chr13:115028354:+	ONLY_REF_SPLICE	YES	68	129	0.67	0.52	0.8084	0.2982	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	RCC10RGB_KIDNEY	0.52	0.67	1.1066	TRUE	0	2	0	3	2	TRUE	ACH-000189
RCC10RGB_KIDNEY	SHISA9--U91319.1	103	29	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	63	1	0.68	0.99	0.8084	0.2276	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	RCC10RGB_KIDNEY	0.68	0.99	1.036	FALSE	4	37	0	19	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	TSPAN4--AP006621.5	95	28	TSPAN4	3911	chr11:847300:+	AP006621.5	16998	chr11:783530:+	ONLY_REF_SPLICE	YES	488	6	0.2	0.95	0.7456	0.2198	LOCAL_REARRANGEMENT:+:[58511],TSPAN4->chr11:842808-867116:+,tetraspanin_4,AP006621.5->chr11:777578-784297:+	RCC10RGB_KIDNEY	0.2	0.95	0.9654	TRUE	0	0	0	1	0	TRUE	ACH-000189
RCC10RGB_KIDNEY	MT-TA--MT-TC	73	16	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5729	0.1256	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RCC10RGB_KIDNEY	1	1	0.6985	FALSE	462	80	0	856	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	CD63--TGFBI	65	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5101	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	RCC10RGB_KIDNEY	1	1	0.5101	TRUE	0	0	0	14	0	TRUE	ACH-000189
RCC10RGB_KIDNEY	TIMM23B--LINC00843	62	7	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.4866	0.0549	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RCC10RGB_KIDNEY	0.99	1	0.5415	TRUE	508	994	45	981	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	TIMM23--RP11-464F9.1	32	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	161	11	0.17	0.75	0.2511	0.0078	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RCC10RGB_KIDNEY	0.17	0.75	0.2589	TRUE	519	3926	326	965	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	DYNC2H1--CASP4	27	4	DYNC2H1	47202	chr11:103068792:+	CASP4	99442	chr11:104825728:-	ONLY_REF_SPLICE	YES	4	0	0.89	1	0.2119	0.0314	DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1,CASP4->caspase_4,chr11:104813593-104840163:-	RCC10RGB_KIDNEY	0.89	1	0.2433	TRUE	0	0	0	1	0	TRUE	ACH-000189
RCC10RGB_KIDNEY	PKN3--SET	22	11	PKN3	4520	chr9:131469684:+	SET	15997	chr9:131446059:+	ONLY_REF_SPLICE	YES	20	3	0.62	0.92	0.1727	0.0863	LOCAL_REARRANGEMENT:+:[6123],PKN3->chr9:131464802-131483197:+,protein_kinase_N3,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RCC10RGB_KIDNEY	0.62	0.92	0.259	TRUE	0	0	0	1	0	TRUE	ACH-000189
RCC10RGB_KIDNEY	HSP90AB1--MT-RNR2	20	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2437	0	0.01	1	0.157	0.0078	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RCC10RGB_KIDNEY	0.01	1	0.1648	FALSE	13	9	0	364	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-TA--MT-TC	16	16	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1256	0.1256	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RCC10RGB_KIDNEY	1	1	0.2512	FALSE	462	80	0	856	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	ACTR3C--RP11-728K20.1	19	3	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	50	0	0.31	1	0.1491	0.0235	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	RCC10RGB_KIDNEY	0.31	1	0.1726	TRUE	0	5	0	16	1	FALSE	ACH-000189
RCC10RGB_KIDNEY	SERPINE1--MT-ND4	17	7	SERPINE1	9298	chr7:100781215:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	10100	13198	0	0	0.1334	0.0549	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	RCC10RGB_KIDNEY	0	0	0.1883	FALSE	0	0	0	1	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND6--MT-TE	16	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1256	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCC10RGB_KIDNEY	1	1	0.1256	FALSE	499	1288	110	792	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	RP11-96H19.1--RP11-446N19.1	13	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.102	0.0471	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RCC10RGB_KIDNEY	1	1	0.1491	FALSE	515	4851	409	746	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	C15orf57--CBX3	12	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	54	12	0.28	0.64	0.0942	0.0706	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RCC10RGB_KIDNEY	0.28	0.64	0.1648	TRUE	267	562	48	632	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	RP11-123O10.4--GRIP1	14	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1099	0.0078	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RCC10RGB_KIDNEY	1	1	0.1177	FALSE	416	2512	207	587	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	UPF3A--CDC16	5	36	UPF3A	4015	chr13:115052104:+	CDC16	27251	chr13:115028358:+	INCL_NON_REF_SPLICE	YES	68	124	0.38	0.25	0.0392	0.2825	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	RCC10RGB_KIDNEY	0.25	0.38	0.3217	TRUE	0	2	0	3	2	TRUE	ACH-000189
RCC10RGB_KIDNEY	MT-ND6--MT-TE	13	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.102	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCC10RGB_KIDNEY	1	1	0.102	FALSE	499	1288	110	792	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	HSP90AB1--MT-RNR2	12	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2437	0	0.01	1	0.0942	0.0078	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RCC10RGB_KIDNEY	0.01	1	0.102	FALSE	13	9	0	364	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND6--MT-TE	11	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0863	0.0314	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCC10RGB_KIDNEY	1	1	0.1177	FALSE	499	1288	110	792	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	SHISA9--U91319.1	4	30	SHISA9	9974	chr16:13297406:+	U91319.1	21484	chr16:13352190:+	ONLY_REF_SPLICE	YES	63	0	0.35	1	0.0314	0.2354	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	RCC10RGB_KIDNEY	0.35	1	0.2668	FALSE	0	14	0	12	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	NRIP1--AF127936.7	11	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.67	1	0.0863	0.0078	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RCC10RGB_KIDNEY	0.67	1	0.0941	FALSE	292	1546	117	613	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-TA--MT-TC	6	17	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0.1334	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RCC10RGB_KIDNEY	1	1	0.1805	FALSE	462	80	0	856	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	SCARB1--UBC	10	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	237	117	0.04	0.09	0.0785	0.0078	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	RCC10RGB_KIDNEY	0.04	0.09	0.0863	TRUE	55	66	6	101	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND4--MT-ATP8	10	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0785	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCC10RGB_KIDNEY	1	1	0.0785	FALSE	230	193	14	283	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-TA--MT-TC	10	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0785	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RCC10RGB_KIDNEY	1	1	0.0785	FALSE	462	80	0	856	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	CTD-2337A12.1--CAST	9	3	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	131	1	0.08	0.0706	0.0235	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	RCC10RGB_KIDNEY	0.08	1	0.0941	TRUE	347	1186	183	220	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND4--MT-ATP8	9	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0706	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCC10RGB_KIDNEY	1	1	0.0706	FALSE	231	205	14	283	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND4--SERPINE1	9	0	MT-ND4	1466	chrM:11225:+	SERPINE1	9133	chr7:100775248:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0706	0	MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	RCC10RGB_KIDNEY	1	1	0.0706	FALSE	0	0	0	2	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	SERPINE1--MT-ND4	7	6	SERPINE1	5962	chr7:100777080:+	MT-ND4	13916	chrM:11045:+	INCL_NON_REF_SPLICE	YES	8298	10144	0	0	0.0549	0.0471	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	RCC10RGB_KIDNEY	0	0	0.102	FALSE	0	0	0	1	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	APP--MT-ND2	8	1	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	2632	4394	0	0	0.0628	0.0078	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	RCC10RGB_KIDNEY	0	0	0.0706	FALSE	0	1	0	51	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MYH9--MT2A	7	4	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	1383	8	0.01	0.58	0.0549	0.0314	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	RCC10RGB_KIDNEY	0.01	0.58	0.0863	FALSE	0	0	0	24	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	GUSBP2--RP11-457M11.5	7	3	GUSBP2	9031	chr6:26846479:-	RP11-457M11.5	15456	chr6:26687347:+	INCL_NON_REF_SPLICE	YES	7	4	0.59	0.71	0.0549	0.0235	GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2,RP11-457M11.5->chr6:26686469-26688192:+	RCC10RGB_KIDNEY	0.59	0.71	0.0784	TRUE	1	2	0	3	2	TRUE	ACH-000189
RCC10RGB_KIDNEY	MT-ND6--MT-TE	7	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0549	0.0235	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCC10RGB_KIDNEY	0.91	1	0.0784	FALSE	499	1288	110	792	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	NRIP1--AF127936.7	5	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	40	0	0.18	1	0.0392	0.0314	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RCC10RGB_KIDNEY	0.18	1	0.0706	FALSE	164	806	69	479	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	SERPINE1--MT-ND4	5	3	SERPINE1	4768	chr7:100775261:+	MT-ND4	14112	chrM:11241:+	INCL_NON_REF_SPLICE	YES	9560	12949	0	0	0.0392	0.0235	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	RCC10RGB_KIDNEY	0	0	0.0627	FALSE	1	0	0	29	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND4--MT-ATP8	5	2	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0392	0.0157	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCC10RGB_KIDNEY	0.88	1	0.0549	FALSE	209	205	15	279	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	SERPINE1--MT-ND4	5	2	SERPINE1	4787	chr7:100775280:+	MT-ND4	14131	chrM:11260:+	INCL_NON_REF_SPLICE	YES	8968	12992	0	0	0.0392	0.0157	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	RCC10RGB_KIDNEY	0	0	0.0549	FALSE	1	0	0	29	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	SHISA9--U91319.1	5	2	SHISA9	7683	chr16:13010672:+	U91319.1	24024	chr16:13568067:+	ONLY_REF_SPLICE	YES	96	11	0.07	0.39	0.0392	0.0157	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	RCC10RGB_KIDNEY	0.07	0.39	0.0549	FALSE	0	1	0	6	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	CTSD--SERPINE1	4	4	CTSD	8746	chr11:1775033:-	SERPINE1	14090	chr7:100771810:+	ONLY_REF_SPLICE	YES	2689	8576	0	0	0.0314	0.0314	CTSD->cathepsin_D,chr11:1773982-1785222:-,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	RCC10RGB_KIDNEY	0	0	0.0628	FALSE	0	0	0	1	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND4--MT-ATP8	5	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0392	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCC10RGB_KIDNEY	1	1	0.0392	FALSE	230	198	14	283	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND4--MT-ATP8	5	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0392	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCC10RGB_KIDNEY	1	1	0.0392	FALSE	230	198	14	283	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND4--MT-ATP8	5	0	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0392	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCC10RGB_KIDNEY	1	1	0.0392	FALSE	231	217	16	283	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0392	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCC10RGB_KIDNEY	1	1	0.0392	FALSE	499	1288	110	792	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0.0471	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RCC10RGB_KIDNEY	1	1	0.0706	FALSE	467	2173	244	435	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	SERPINE1--MT-ND4	3	6	SERPINE1	4861	chr7:100775354:+	MT-ND4	13785	chrM:10914:+	INCL_NON_REF_SPLICE	YES	9102	3999	0	0	0.0235	0.0471	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	RCC10RGB_KIDNEY	0	0	0.0706	FALSE	1	0	0	29	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	ACTR3C--RP11-728K20.1	4	0	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	19906	chr7:149588390:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	RCC10RGB_KIDNEY	1	1	0.0314	TRUE	3	46	4	12	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	IGFBP7--MT-ND4L	4	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RCC10RGB_KIDNEY	1	1	0.0314	FALSE	1	0	0	30	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND4--MT-ATP8	4	0	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCC10RGB_KIDNEY	1	1	0.0314	FALSE	231	217	16	283	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND4--MT-ATP8	3	3	MT-ND4	1818	chrM:11577:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	11767	0	0	1	0.0235	0.0235	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCC10RGB_KIDNEY	0	1	0.047	FALSE	231	217	16	283	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND4--MT-ATP8	3	3	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	NO	11733	0	0	1	0.0235	0.0235	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCC10RGB_KIDNEY	0	1	0.047	FALSE	231	217	16	283	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND6--MT-TE	3	3	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0235	0.0235	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCC10RGB_KIDNEY	0.86	1	0.047	FALSE	499	1288	110	792	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	25	0	0.17	1	0.0235	0.0157	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RCC10RGB_KIDNEY	0.17	1	0.0392	FALSE	125	705	46	456	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0.0471	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RCC10RGB_KIDNEY	1	1	0.0628	FALSE	275	511	55	178	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND4--MT-ATP8	3	1	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11375	2	0	0.67	0.0235	0.0078	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCC10RGB_KIDNEY	0	0.67	0.0313	FALSE	231	217	16	283	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND4--MT-ATP8	3	1	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11732	27	0	0.13	0.0235	0.0078	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCC10RGB_KIDNEY	0	0.13	0.0313	FALSE	231	215	16	283	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND4--MT-ATP8	3	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	11654	10	0	0.29	0.0235	0.0078	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCC10RGB_KIDNEY	0	0.29	0.0313	FALSE	231	217	16	283	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND4--MT-ATP8	3	1	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	13190	2	0	0.67	0.0235	0.0078	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCC10RGB_KIDNEY	0	0.67	0.0313	FALSE	231	217	16	283	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MFSD10--MT-ND4L	3	0	MFSD10	3408	chr4:2934179:-	MT-ND4L	8301	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0235	0	MFSD10->chr4:2932288-2936586:-,major_facilitator_superfamily_domain_containing_10,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RCC10RGB_KIDNEY	1	1	0.0235	FALSE	0	0	0	2	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND4--MT-ATP8	3	0	MT-ND4	1244	chrM:11003:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0235	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCC10RGB_KIDNEY	1	1	0.0235	FALSE	231	204	14	283	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND4--MT-ATP8	3	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0235	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RCC10RGB_KIDNEY	1	1	0.0235	FALSE	230	193	14	283	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0235	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RCC10RGB_KIDNEY	1	1	0.0235	FALSE	499	1288	110	792	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	TIMM23B--LINC00843	3	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0235	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RCC10RGB_KIDNEY	1	1	0.0235	TRUE	62	24	1	171	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	SHISA9--U91319.1	2	3	SHISA9	9974	chr16:13297406:+	U91319.1	24024	chr16:13568067:+	ONLY_REF_SPLICE	YES	63	11	0.07	0.31	0.0157	0.0235	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	RCC10RGB_KIDNEY	0.07	0.31	0.0392	FALSE	1	17	0	8	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0078	0.0471	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RCC10RGB_KIDNEY	1	1	0.0549	FALSE	407	2205	196	549	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	ACTR3C--RP11-728K20.1	2	1	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	18809	chr7:149589487:-	ONLY_REF_SPLICE	YES	50	0	0.06	1	0.0157	0.0078	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	RCC10RGB_KIDNEY	0.06	1	0.0235	TRUE	0	3	0	4	2	FALSE	ACH-000189
RCC10RGB_KIDNEY	DSCR4--KCNJ6	2	1	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	1	3	0.75	0.5	0.0157	0.0078	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	RCC10RGB_KIDNEY	0.5	0.75	0.0235	FALSE	0	24	0	27	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	HNRNPA2B1--MPHOSPH8	2	0	HNRNPA2B1	1958	chr7:26240192:-	MPHOSPH8	29454	chr13:20245974:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,MPHOSPH8->M-phase_phosphoprotein_8,chr13:20207788-20247599:+	RCC10RGB_KIDNEY	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000189
RCC10RGB_KIDNEY	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	RCC10RGB_KIDNEY	1	1	0.0157	TRUE	145	312	16	51	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RCC10RGB_KIDNEY	1	1	0.0157	FALSE	16	356	14	466	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	RP11-467J12.4--CASC16	2	0	RP11-467J12.4	2192	chr16:53081117:-	CASC16	7619	chr16:52682024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	RP11-467J12.4->chr16:53069602-53086785:-,CASC16->cancer_susceptibility_candidate_16_(non-protein_coding),chr16:52586002-52686017:-	RCC10RGB_KIDNEY	1	1	0.0157	TRUE	0	6	0	3	6	TRUE	ACH-000189
RCC10RGB_KIDNEY	SHISA9--DERA	2	0	SHISA9	7683	chr16:13010672:+	DERA	26882	chr12:16112763:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase	RCC10RGB_KIDNEY	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000189
RCC10RGB_KIDNEY	SHISA9--U91319.1	1	4	SHISA9	7683	chr16:13010672:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	96	1	0.05	0.83	0.0078	0.0314	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	RCC10RGB_KIDNEY	0.05	0.83	0.0392	FALSE	2	8	0	8	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	UPF3A--CDC16	1	2	UPF3A	1544	chr13:115047602:+	CDC16	27247	chr13:115028354:+	ONLY_REF_SPLICE	YES	86	129	0.03	0.02	0.0078	0.0157	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	RCC10RGB_KIDNEY	0.02	0.03	0.0235	TRUE	0	0	0	1	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	162	1	0.01	0.0078	0.0078	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	RCC10RGB_KIDNEY	0.01	1	0.0156	FALSE	15	36	8	26	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	NCOR2--UBC	1	1	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	88	117	0.02	0.02	0.0078	0.0078	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	RCC10RGB_KIDNEY	0.02	0.02	0.0156	TRUE	52	148	13	33	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	SCARB1--UBC	1	1	SCARB1	4931	chr12:125348141:-	UBC	30735	chr12:125398311:-	ONLY_REF_SPLICE	YES	237	102	0.01	0.02	0.0078	0.0078	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	RCC10RGB_KIDNEY	0.01	0.02	0.0156	FALSE	55	66	6	101	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	TGFA--RTN4	1	1	TGFA	3064	chr2:70741991:-	RTN4	29795	chr2:55214834:-	ONLY_REF_SPLICE	YES	258	211	0.01	0.01	0.0078	0.0078	TGFA->Oncogene{Bushman},chr2:70674412-70781325:-,transforming_growth_factor_alpha,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	RCC10RGB_KIDNEY	0.01	0.01	0.0156	FALSE	0	0	0	1	0	FALSE	ACH-000189
RCC10RGB_KIDNEY	TLN2--TPM1	1	1	TLN2	1160	chr15:62682884:+	TPM1	85052	chr15:63349184:+	ONLY_REF_SPLICE	YES	24	4770	0.08	0	0.0078	0.0078	GTEx_FI:{Heart=[count:2=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},TLN2->chr15:62682725-63136830:+,talin_2,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	RCC10RGB_KIDNEY	0	0.08	0.0156	FALSE	2	1	0	6	0	FALSE	ACH-000189
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNAB2--CDK5RAP2	212	89	KCNAB2	11901	chr1:6100705:+	CDK5RAP2	51185	chr9:123253755:-	ONLY_REF_SPLICE	YES	322	35	0.48	0.9	2.4148	1.0138	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.9	3.4286	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	126	0	IGH@	93161	chr14:106331617:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4352	0	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.4352	TRUE	0	0	0	3	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2583A14.10--PIK3C3	83	71	CTD-2583A14.10	1227	chr19:58331313:+	PIK3C3	25196	chr18:39600602:+	ONLY_REF_SPLICE	YES	21	6	0.88	0.96	0.9454	0.8087	CTD-2583A14.10->chr19:58331087-58370309:+,PIK3C3->chr18:39535171-39667794:+,phosphatidylinositol_3-kinase_catalytic_subunit_type_3	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.96	1.7541	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	90	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0251	0.1936	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.2187	TRUE	508	994	45	981	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2583A14.10--PIK3C3	73	77	CTD-2583A14.10	1831	chr19:58331917:+	PIK3C3	25196	chr18:39600602:+	ONLY_REF_SPLICE	YES	19	6	0.89	0.96	0.8315	0.8771	CTD-2583A14.10->chr19:58331087-58370309:+,PIK3C3->chr18:39535171-39667794:+,phosphatidylinositol_3-kinase_catalytic_subunit_type_3	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.96	1.7086	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNAB2--CDK5RAP2	52	93	KCNAB2	13128	chr1:6101932:+	CDK5RAP2	51185	chr9:123253755:-	ONLY_REF_SPLICE	YES	321	35	0.31	0.81	0.5923	1.0593	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.81	1.6516	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	54	1	IGH@	94353	chr14:106330425:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	168	0	0.25	1	0.6151	0.0114	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.6265	TRUE	0	0	0	3	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	51	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5809	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5809	TRUE	519	3926	326	965	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	38	1	IGH@	94754	chr14:106330024:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	160	0	0.2	1	0.4328	0.0114	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.4442	TRUE	0	0	0	3	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--NOX4	23	6	PICALM	14083	chr11:85711686:-	NOX4	48225	chr11:89088211:-	ONLY_REF_SPLICE	YES	36	0	0.45	1	0.262	0.0683	PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,NOX4->NADPH_oxidase_4,chr11:89057524-89322779:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	1	0.3303	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--CASC11	19	2	IGH@	95370	chr14:106329408:-	CASC11	131810	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	160	0	0.12	1	0.2164	0.0228	IGH@->Oncogene{Bushman},CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.2392	TRUE	0	0	0	3	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	18	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.205	0.0228	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2278	FALSE	499	1288	110	792	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	33	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	4	0.91	0.91	0.0683	0.3759	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.91	0.4442	FALSE	189	492	56	216	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	14	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1595	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1595	TRUE	0	0	0	434	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	33	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	5	4	0.88	0.9	0.0456	0.3759	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.9	0.4215	FALSE	189	492	56	216	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2583A14.10--PIK3C3	3	31	CTD-2583A14.10	1227	chr19:58331313:+	PIK3C3	28376	chr18:39607407:+	ONLY_REF_SPLICE	YES	21	17	0.62	0.67	0.0342	0.3531	CTD-2583A14.10->chr19:58331087-58370309:+,PIK3C3->chr18:39535171-39667794:+,phosphatidylinositol_3-kinase_catalytic_subunit_type_3	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.67	0.3873	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	16	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	12	0	0.65	1	0.0683	0.1822	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	0.2505	FALSE	499	1288	110	792	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNAB2--CDK5RAP2	5	18	KCNAB2	7114	chr1:6086505:+	CDK5RAP2	51185	chr9:123253755:-	ONLY_REF_SPLICE	YES	68	35	0.25	0.4	0.057	0.205	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.4	0.262	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	26	MT-CO3	1039	chrM:9245:+	MT-ATP6	5090	chrM:8832:+	INCL_NON_REF_SPLICE	YES	0	21	1	0.58	0.0342	0.2962	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	1	0.3304	FALSE	189	492	56	216	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	9	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	4	0	0.71	1	0.1025	0.0114	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.1139	FALSE	189	492	56	216	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0911	0.0342	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1253	FALSE	499	1288	110	792	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	12	0	0.56	1	0.0456	0.1253	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.1709	FALSE	499	1288	110	792	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MSH3--ARSB	6	1	MSH3	9246	chr5:79974912:+	ARSB	37562	chr5:78181650:-	ONLY_REF_SPLICE	YES	189	54	0.04	0.11	0.0683	0.0114	MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3,ARSB->arylsulfatase_B,chr5:78073032-78281910:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.11	0.0797	TRUE	0	0	0	1	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MSH3--SERINC5	5	5	MSH3	22464	chr5:80088663:+	SERINC5	33820	chr5:79498872:-	ONLY_REF_SPLICE	YES	166	53	0.06	0.16	0.057	0.057	MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3,SERINC5->chr5:79407050-79551898:-,serine_incorporator_5	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.16	0.114	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNAB2--CDK5RAP2	5	0	KCNAB2	2323	chr1:6052848:+	CDK5RAP2	51185	chr9:123253755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MSH3--ARSB	5	0	MSH3	9246	chr5:79974912:+	ARSB	40096	chr5:78135249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0	MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3,ARSB->arylsulfatase_B,chr5:78073032-78281910:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	4	1	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0.0114	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.057	TRUE	0	1	0	84	1	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	5	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.89	0.0342	0.057	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.0912	FALSE	189	492	56	216	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	3	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0342	0.0342	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.0684	FALSE	189	492	56	216	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0342	0.0114	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0456	FALSE	16	356	14	466	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGJ--CSDE1	3	0	IGJ	5243	chr4:71527894:-	CSDE1	19094	chr1:115282346:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	IGJ->chr4:71521258-71547534:-,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KYNU--ARHGAP15	3	0	KYNU	13738	chr2:143718339:+	ARHGAP15	52279	chr2:144381702:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	NEIGHBORS[49041],KYNU->chr2:143635067-143799890:+,kynureninase,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0342	FALSE	0	0	0	1	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0342	FALSE	189	492	56	216	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0342	FALSE	499	1288	110	792	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0342	FALSE	499	1288	110	792	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM2--GNAS	2	0	CALM2	1161	chr2:47403580:-	GNAS	30774	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=2,Pituitary=1},CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	2	0	2	1	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	9	0	44	1	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXM1--ADIPOR2	2	0	FOXM1	8548	chr12:2973486:-	ADIPOR2	20977	chr12:1863424:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	FOXM1->Oncogene{Bushman},chr12:2966847-2986206:-,forkhead_box_M1,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HOMER1--ZFYVE16	2	0	HOMER1	2448	chr5:78808593:-	ZFYVE16	22750	chr5:79729928:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	HOMER1->chr5:78668459-78810040:-,homer_scaffolding_protein_1,ZFYVE16->chr5:79703832-79775169:+,zinc_finger_FYVE-type_containing_16	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LNX1--SCFD2	2	0	LNX1	2158	chr4:54562186:-	SCFD2	31773	chr4:54011749:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	NEIGHBORS[93226],LNX1->chr4:54325468-54567572:-,ligand_of_numb-protein_X_1,SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCGF3--CTBP1	2	0	PCGF3	1223	chr4:699759:+	CTBP1	24300	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PCGF3->chr4:699537-764428:+,polycomb_group_ring_finger_3,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	1	0	2	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POU2F1--RCSD1	2	0	POU2F1	1130	chr1:167190195:+	RCSD1	51671	chr1:167653137:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,RCSD1->RCSD_domain_containing_1,chr1:167599330-167675486:+	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	0	0	2	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	FALSE	46	201	11	112	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STIM2--SEL1L3	2	0	STIM2	1670	chr4:26859969:+	SEL1L3	28129	chr4:25849486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	STIM2->chr4:26859300-27027003:+,stromal_interaction_molecule_2,SEL1L3->SEL1L_family_member_3,chr4:25749055-25865382:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNAB2--CDK5RAP2	1	3	KCNAB2	11901	chr1:6100705:+	CDK5RAP2	53500	chr9:123239728:-	ONLY_REF_SPLICE	YES	322	88	0.01	0.04	0.0114	0.0342	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0456	FALSE	0	0	0	1	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0114	0.0228	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0342	FALSE	407	2205	196	549	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADARB2--PFKP	1	1	ADARB2	1426	chr10:1779245:-	PFKP	26828	chr10:3124580:+	ONLY_REF_SPLICE	YES	4	472	0.33	0	0.0114	0.0114	{Klijn_CCL:Lung=1},ADARB2->Oncogene{Bushman},adenosine_deaminase,_RNA_specific_B2_(inactive),chr10:1228073-1779670:-,PFKP->chr10:3108525-3179904:+,phosphofructokinase,_platelet	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.33	0.0228	FALSE	0	1	0	2	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-3131K8.2--CCNB1IP1	1	1	CTD-3131K8.2	1547	chr19:17622152:-	CCNB1IP1	22581	chr14:20781960:-	ONLY_REF_SPLICE	YES	8	98	0.2	0.02	0.0114	0.0114	CTD-3131K8.2->chr19:17599799-17622698:-,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.2	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INPP5B--RANGAP1	1	1	INPP5B	23269	chr1:38338602:-	RANGAP1	38929	chr22:41677086:-	ONLY_REF_SPLICE	YES	45	261	0.04	0.01	0.0114	0.0114	INPP5B->chr1:38326369-38412729:-,inositol_polyphosphate-5-phosphatase_B,RANGAP1->Ran_GTPase_activating_protein_1,chr22:41641615-41682255:-	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LEMD3--USP15	1	1	LEMD3	2548	chr12:65564898:+	USP15	27513	chr12:62715245:+	ONLY_REF_SPLICE	YES	65	65	0.03	0.03	0.0114	0.0114	LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+,USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.03	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SH3PXD2A--C3orf17	1	1	SH3PXD2A	12241	chr10:105420741:-	C3orf17	36037	chr3:112736449:-	ONLY_REF_SPLICE	YES	38	76	0.05	0.03	0.0114	0.0114	SH3PXD2A->SH3_and_PX_domains_2A,chr10:105348285-105615301:-,C3orf17->chr3:112721287-112738708:-,chromosome_3_open_reading_frame_17	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.05	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000287
NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBL5--MED19	1	1	UBL5	1498	chr19:9939065:+	MED19	8317	chr11:57471868:-	ONLY_REF_SPLICE	YES	635	39	0	0.05	0.0114	0.0114	UBL5->chr19:9938568-9940791:+,ubiquitin_like_5,MED19->chr11:57471186-57479693:-,mediator_complex_subunit_19	NUDUL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0228	FALSE	0	0	0	4	0	FALSE	ACH-000287
MCAS_OVARY	BAIAP2L1--BCAS4	410	112	BAIAP2L1	4549	chr7:97984354:-	BCAS4	28604	chr20:49493023:+	ONLY_REF_SPLICE	YES	72	23	0.88	0.96	6.4871	1.7721	{Klijn_CCL:Ovary=1},BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-,BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+	MCAS_OVARY	0.88	0.96	8.2592	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	AC104389.28--HBE1	163	137	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	157	2	0.66	0.99	2.579	2.1676	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MCAS_OVARY	0.66	0.99	4.7466	TRUE	0	48	0	65	48	FALSE	ACH-000796
MCAS_OVARY	SEMA3A--ARFGEF2	145	55	SEMA3A	18041	chr7:83634655:-	ARFGEF2	34713	chr20:47557736:+	ONLY_REF_SPLICE	YES	388	14	0.34	0.93	2.2942	0.8702	{Klijn_CCL:Ovary=1},SEMA3A->chr7:83585093-84122040:-,semaphorin_3A,ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+	MCAS_OVARY	0.34	0.93	3.1644	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	TIMM23B--LINC00843	90	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.424	0.3797	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MCAS_OVARY	1	1	1.8037	TRUE	508	994	45	981	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND1--MT-RNR2	79	6	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	YES	123	340	0.41	0.2	1.25	0.0949	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MCAS_OVARY	0.2	0.41	1.3449	FALSE	92	22	4	61	0	FALSE	ACH-000796
MCAS_OVARY	MT-TA--MT-TN	80	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2658	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MCAS_OVARY	1	1	1.2658	FALSE	369	2501	205	193	0	FALSE	ACH-000796
MCAS_OVARY	AC104389.28--HBE1	30	145	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	157	0	0.53	1	0.4747	2.2942	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MCAS_OVARY	0.53	1	2.7689	TRUE	0	35	0	55	35	FALSE	ACH-000796
MCAS_OVARY	MT-TA--MT-TC	56	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.886	0.0949	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MCAS_OVARY	1	1	0.9809	FALSE	462	80	0	856	0	FALSE	ACH-000796
MCAS_OVARY	GS1-124K5.12--MAGI2	50	13	GS1-124K5.12	1130	chr7:66057244:-	MAGI2	38162	chr7:77764523:-	ONLY_REF_SPLICE	YES	14	9	0.82	0.88	0.7911	0.2057	GS1-124K5.12->chr7:66010634-66057373:-,MAGI2->ArcherDX_panel,FoundationOne_panel,chr7:77646393-79082890:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_2	MCAS_OVARY	0.82	0.88	0.9968	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	TIMM23--RP11-464F9.1	51	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	293	7	0.16	0.89	0.8069	0.0791	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MCAS_OVARY	0.16	0.89	0.886	TRUE	519	3926	326	965	0	FALSE	ACH-000796
MCAS_OVARY	BAIAP2L1--BCAS4	17	114	BAIAP2L1	4549	chr7:97984354:-	BCAS4	28115	chr20:49492534:+	ONLY_REF_SPLICE	YES	72	26	0.65	0.83	0.269	1.8037	{Klijn_CCL:Ovary=1},BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-,BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+	MCAS_OVARY	0.65	0.83	2.0727	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	MT-ND4--MT-ND4L	3	158	MT-ND4	1197	chrM:10956:+	MT-ND4L	5432	chrM:10523:+	INCL_NON_REF_SPLICE	YES	43	0	0.79	1	0.0475	2.4999	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MCAS_OVARY	0.79	1	2.5474	FALSE	344	826	44	306	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND4--MT-ND4L	5	134	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	3	0	0.98	1	0.0791	2.1202	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MCAS_OVARY	0.98	1	2.1993	FALSE	344	826	44	306	0	FALSE	ACH-000796
MCAS_OVARY	ADNP--ADAM9	26	47	ADNP	2771	chr20:49545188:-	ADAM9	25548	chr8:38879162:+	ONLY_REF_SPLICE	YES	41	477	0.64	0.13	0.4114	0.7436	ADNP->activity-dependent_neuroprotector_homeobox,chr20:49505585-49547958:-,ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+	MCAS_OVARY	0.13	0.64	1.155	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	MT-ND4--MT-ND4L	3	133	MT-ND4	1081	chrM:10840:+	MT-ND4L	5526	chrM:10617:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0475	2.1043	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MCAS_OVARY	0.99	1	2.1518	FALSE	344	826	44	306	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND4--MT-ND4L	5	114	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0791	1.8037	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MCAS_OVARY	0.99	1	1.8828	FALSE	344	821	44	306	0	FALSE	ACH-000796
MCAS_OVARY	MT-TA--MT-TN	15	71	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2373	1.1234	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MCAS_OVARY	1	1	1.3607	FALSE	369	2501	205	193	0	FALSE	ACH-000796
MCAS_OVARY	BAIAP2L1--BCAS4	4	112	BAIAP2L1	4549	chr7:97984354:-	BCAS4	28607	chr20:49493026:+	INCL_NON_REF_SPLICE	YES	72	23	0.62	0.83	0.0633	1.7721	{Klijn_CCL:Ovary=1},BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-,BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+	MCAS_OVARY	0.62	0.83	1.8354	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	MT-ND4--MT-ND4L	3	112	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	8	0	0.93	1	0.0475	1.7721	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MCAS_OVARY	0.93	1	1.8196	FALSE	344	826	44	306	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND6--MT-TE	27	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4272	0.0949	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MCAS_OVARY	1	1	0.5221	FALSE	499	1288	110	792	0	FALSE	ACH-000796
MCAS_OVARY	ZNF654--HMGB2	28	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.443	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MCAS_OVARY	1	1	0.443	TRUE	0	0	0	518	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND6--MT-TE	21	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.3323	0.2057	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MCAS_OVARY	0.94	1	0.538	FALSE	499	1288	110	792	0	FALSE	ACH-000796
MCAS_OVARY	MT-TA--MT-TN	15	36	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2373	0.5696	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MCAS_OVARY	1	1	0.8069	FALSE	369	2501	205	193	0	FALSE	ACH-000796
MCAS_OVARY	BAIAP2L1--BCAS4	5	71	BAIAP2L1	4510	chr7:97984393:-	BCAS4	28604	chr20:49493023:+	INCL_NON_REF_SPLICE	YES	55	23	0.58	0.77	0.0791	1.1234	{Klijn_CCL:Ovary=1},BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-,BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+	MCAS_OVARY	0.58	0.77	1.2025	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	MT-TA--MT-TN	11	46	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.174	0.7278	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MCAS_OVARY	1	1	0.9018	FALSE	369	2501	205	193	0	FALSE	ACH-000796
MCAS_OVARY	ADAM9--SSPN	21	5	ADAM9	14387	chr8:38899636:+	SSPN	36968	chr12:26377226:+	ONLY_REF_SPLICE	YES	499	2	0.05	0.93	0.3323	0.0791	{Klijn_CCL:Ovary=1},ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	MCAS_OVARY	0.05	0.93	0.4114	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	NPM1P24--SET	22	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3481	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MCAS_OVARY	1	1	0.3481	TRUE	0	0	0	434	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND4--MT-CO1	21	2	MT-ND4	1205	chrM:10964:+	MT-CO1	5695	chrM:6220:+	INCL_NON_REF_SPLICE	YES	16595	9360	0	0	0.3323	0.0316	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCAS_OVARY	0	0	0.3639	FALSE	19	89	11	16	0	FALSE	ACH-000796
MCAS_OVARY	MT-TA--MT-TN	18	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2848	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MCAS_OVARY	1	1	0.2848	FALSE	369	2501	205	193	0	FALSE	ACH-000796
MCAS_OVARY	ADAM9--POM121	16	7	ADAM9	14387	chr8:38899636:+	POM121	48677	chr7:72418867:+	ONLY_REF_SPLICE	YES	499	16	0.04	0.59	0.2532	0.1108	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,POM121->POM121_transmembrane_nucleoporin,chr7:72349936-72421979:+	MCAS_OVARY	0.04	0.59	0.364	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	MT-ND4--MT-ND4L	11	22	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	913	0	0.03	1	0.174	0.3481	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MCAS_OVARY	0.03	1	0.5221	FALSE	344	827	44	306	0	FALSE	ACH-000796
MCAS_OVARY	WBSCR22--SEMA3A	14	9	WBSCR22	1780	chr7:73098134:+	SEMA3A	32610	chr7:83636813:-	ONLY_REF_SPLICE	YES	70	413	0.25	0.05	0.2215	0.1424	{Klijn_CCL:Ovary=1},WBSCR22->Williams-Beuren_syndrome_chromosome_region_22,chr7:73097355-73119491:+,SEMA3A->chr7:83585093-84122040:-,semaphorin_3A	MCAS_OVARY	0.05	0.25	0.3639	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	MT-ND6--MT-TE	14	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2215	0.0949	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MCAS_OVARY	1	1	0.3164	FALSE	499	1288	110	792	0	FALSE	ACH-000796
MCAS_OVARY	HSP90AB1--MT-RNR2	14	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3130	0	0.01	1	0.2215	0.0316	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MCAS_OVARY	0.01	1	0.2531	FALSE	13	9	0	364	0	FALSE	ACH-000796
MCAS_OVARY	MT-TA--MT-TN	9	19	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1424	0.3006	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MCAS_OVARY	1	1	0.443	FALSE	369	2501	205	193	0	FALSE	ACH-000796
MCAS_OVARY	WBSCR22--SEMA3A	11	7	WBSCR22	1780	chr7:73098134:+	SEMA3A	33755	chr7:83634874:-	ONLY_REF_SPLICE	YES	70	468	0.2	0.04	0.174	0.1108	{Klijn_CCL:Ovary=1},WBSCR22->Williams-Beuren_syndrome_chromosome_region_22,chr7:73097355-73119491:+,SEMA3A->chr7:83585093-84122040:-,semaphorin_3A	MCAS_OVARY	0.04	0.2	0.2848	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	MT-ND4--MT-ND4L	9	12	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	127	0	0.14	1	0.1424	0.1899	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MCAS_OVARY	0.14	1	0.3323	FALSE	344	827	44	306	0	FALSE	ACH-000796
MCAS_OVARY	MT-TA--MT-TC	12	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1899	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MCAS_OVARY	1	1	0.1899	FALSE	462	80	0	856	0	FALSE	ACH-000796
MCAS_OVARY	ADAM9--SSPN	11	3	ADAM9	13215	chr8:38884329:+	SSPN	36968	chr12:26377226:+	ONLY_REF_SPLICE	YES	585	2	0.02	0.88	0.174	0.0475	{Klijn_CCL:Ovary=1},ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	MCAS_OVARY	0.02	0.88	0.2215	TRUE	0	0	0	1	0	FALSE	ACH-000796
MCAS_OVARY	IGF2BP2--LIPH	10	7	IGF2BP2	2393	chr3:185540941:-	LIPH	27832	chr3:185252920:-	ONLY_REF_SPLICE	YES	125	58	0.12	0.23	0.1582	0.1108	NEIGHBORS[91126],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,LIPH->chr3:185224050-185270401:-,lipase_H	MCAS_OVARY	0.12	0.23	0.269	FALSE	0	0	0	1	0	FALSE	ACH-000796
MCAS_OVARY	MT-TA--MT-TN	4	31	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0633	0.4905	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MCAS_OVARY	1	1	0.5538	FALSE	369	2501	205	193	0	FALSE	ACH-000796
MCAS_OVARY	C15orf57--CBX3	9	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	20	29	0.43	0.34	0.1424	0.0949	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MCAS_OVARY	0.34	0.43	0.2373	TRUE	267	562	48	632	0	FALSE	ACH-000796
MCAS_OVARY	BAIAP2L1--BCAS4	1	37	BAIAP2L1	3164	chr7:97991669:-	BCAS4	28604	chr20:49493023:+	ONLY_REF_SPLICE	NO	32	23	0.54	0.62	0.0158	0.5854	{Klijn_CCL:Ovary=1},BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-,BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+	MCAS_OVARY	0.54	0.62	0.6012	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	AC104389.28--HBE1	10	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1582	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MCAS_OVARY	1	1	0.1582	TRUE	0	16	0	53	13	FALSE	ACH-000796
MCAS_OVARY	MT-ND6--MT-TE	5	20	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0791	0.3164	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MCAS_OVARY	0.93	1	0.3955	FALSE	499	1288	110	792	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND6--MT-TE	4	20	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0633	0.3164	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MCAS_OVARY	0.92	1	0.3797	FALSE	499	1288	110	792	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND4--MT-ND4L	3	23	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	35	0	0.43	1	0.0475	0.3639	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MCAS_OVARY	0.43	1	0.4114	FALSE	344	826	44	306	0	FALSE	ACH-000796
MCAS_OVARY	CDK14--ARFGEF2	8	2	CDK14	14948	chr7:90419967:+	ARFGEF2	57561	chr20:47614730:+	ONLY_REF_SPLICE	YES	36	27	0.22	0.27	0.1266	0.0316	CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14,ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+	MCAS_OVARY	0.22	0.27	0.1582	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	MT-ND1--MT-RNR2	7	6	MT-ND1	1297	chrM:3603:+	MT-RNR2	5502	chrM:2216:+	INCL_NON_REF_SPLICE	YES	85	13763	0.13	0	0.1108	0.0949	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MCAS_OVARY	0	0.13	0.2057	FALSE	120	26	5	87	0	FALSE	ACH-000796
MCAS_OVARY	MT-TA--MT-TC	7	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1108	0.0949	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MCAS_OVARY	1	1	0.2057	FALSE	462	80	0	856	0	FALSE	ACH-000796
MCAS_OVARY	GS1-259H13.10--RP11-150O12.2	7	5	GS1-259H13.10	2283	chr7:99158318:+	RP11-150O12.2	10863	chr8:37337607:+	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.1108	0.0791	GS1-259H13.10->chr7:99156291-99205433:+,RP11-150O12.2->chr8:37337607-37338327:+	MCAS_OVARY	0.75	1	0.1899	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	LINC00973--ST3GAL6	7	5	LINC00973	2400	chr3:98701378:+	ST3GAL6	19010	chr3:98503789:+	INCL_NON_REF_SPLICE	YES	153	3	0.07	0.8	0.1108	0.0791	LINC00973->chr3:98699902-98701940:+,long_intergenic_non-protein_coding_RNA_973,ST3GAL6->ST3_beta-galactoside_alpha-2,3-sialyltransferase_6,chr3:98451080-98540045:+	MCAS_OVARY	0.07	0.8	0.1899	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	MT-ATP6--MT-CO1	8	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13986	31483	0	0	0.1266	0.0158	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCAS_OVARY	0	0	0.1424	FALSE	183	104	9	328	0	FALSE	ACH-000796
MCAS_OVARY	MT-TA--MT-TN	3	21	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0.3323	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MCAS_OVARY	1	1	0.3798	FALSE	369	2501	205	193	0	FALSE	ACH-000796
MCAS_OVARY	STAG3L1--ADNP	7	5	STAG3L1	5752	chr7:74995707:+	ADNP	21625	chr20:49511049:-	ONLY_REF_SPLICE	YES	52	88	0.19	0.12	0.1108	0.0791	STAG3L1->chr7:74988448-75024657:+,stromal_antigen_3-like_1_(pseudogene),ADNP->activity-dependent_neuroprotector_homeobox,chr20:49505585-49547958:-	MCAS_OVARY	0.12	0.19	0.1899	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	MT-ND4--MT-CO1	5	11	MT-ND4	1773	chrM:11532:+	MT-CO1	5916	chrM:6441:+	INCL_NON_REF_SPLICE	YES	20916	29647	0	0	0.0791	0.174	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCAS_OVARY	0	0	0.2531	FALSE	19	92	11	16	0	FALSE	ACH-000796
MCAS_OVARY	GS1-124K5.12--MAGI2	6	6	GS1-124K5.12	1130	chr7:66057244:-	MAGI2	39348	chr7:77762377:-	ONLY_REF_SPLICE	YES	14	24	0.46	0.33	0.0949	0.0949	GS1-124K5.12->chr7:66010634-66057373:-,MAGI2->ArcherDX_panel,FoundationOne_panel,chr7:77646393-79082890:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_2	MCAS_OVARY	0.33	0.46	0.1898	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	HSP90AB1--MT-RNR2	7	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3154	0	0	1	0.1108	0.0316	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MCAS_OVARY	0	1	0.1424	FALSE	13	9	0	364	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND4--MT-ND4L	7	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1108	0.0316	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MCAS_OVARY	1	1	0.1424	FALSE	344	821	44	306	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND1--MT-RNR2	3	17	MT-ND1	1485	chrM:3791:+	MT-RNR2	4979	chrM:1693:+	INCL_NON_REF_SPLICE	YES	222	0	0.08	1	0.0475	0.269	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MCAS_OVARY	0.08	1	0.3165	FALSE	114	26	4	85	0	FALSE	ACH-000796
MCAS_OVARY	MT-TA--MT-TN	7	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1108	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MCAS_OVARY	1	1	0.1108	FALSE	369	2501	205	193	0	FALSE	ACH-000796
MCAS_OVARY	ADNP--ADAM9	5	7	ADNP	1596	chr20:49547363:-	ADAM9	25548	chr8:38879162:+	ONLY_REF_SPLICE	YES	0	477	1	0.02	0.0791	0.1108	ADNP->activity-dependent_neuroprotector_homeobox,chr20:49505585-49547958:-,ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+	MCAS_OVARY	0.02	1	0.1899	TRUE	0	0	0	1	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND1--MT-RNR2	5	7	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	59	0	0.17	1	0.0791	0.1108	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MCAS_OVARY	0.17	1	0.1899	FALSE	114	26	4	85	0	FALSE	ACH-000796
MCAS_OVARY	MT-TA--MT-TC	5	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0791	0.1108	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MCAS_OVARY	1	1	0.1899	FALSE	462	80	0	856	0	FALSE	ACH-000796
MCAS_OVARY	ADAM9--POM121	6	2	ADAM9	14387	chr8:38899636:+	POM121	49045	chr7:72419235:+	INCL_NON_REF_SPLICE	YES	499	55	0.02	0.13	0.0949	0.0316	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,POM121->POM121_transmembrane_nucleoporin,chr7:72349936-72421979:+	MCAS_OVARY	0.02	0.13	0.1265	TRUE	0	0	0	1	0	FALSE	ACH-000796
MCAS_OVARY	ADAM9--SSPN	5	6	ADAM9	14387	chr8:38899636:+	SSPN	33067	chr12:26332929:+	ONLY_REF_SPLICE	YES	499	0	0.02	1	0.0791	0.0949	{Klijn_CCL:Ovary=1},ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	MCAS_OVARY	0.02	1	0.174	TRUE	0	0	0	1	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND1--MT-RNR2	5	6	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	56	12884	0.16	0	0.0791	0.0949	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MCAS_OVARY	0	0.16	0.174	FALSE	120	26	5	87	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND4--MT-ND4L	3	12	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	40	0	0.27	1	0.0475	0.1899	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MCAS_OVARY	0.27	1	0.2374	FALSE	344	826	44	306	0	FALSE	ACH-000796
MCAS_OVARY	MT-TA--MT-TN	6	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0949	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MCAS_OVARY	1	1	0.0949	FALSE	369	2501	205	193	0	FALSE	ACH-000796
MCAS_OVARY	GTF2IRD1--IKBKB	5	2	GTF2IRD1	1387	chr7:73868506:+	IKBKB	34772	chr8:42129601:+	ONLY_REF_SPLICE	YES	18	9	0.28	0.44	0.0791	0.0316	GTF2IRD1->GTF2I_repeat_domain_containing_1,chr7:73868120-74016931:+,IKBKB->chr8:42128820-42189973:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_beta	MCAS_OVARY	0.28	0.44	0.1107	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	MT-ND4--MT-CO1	3	10	MT-ND4	1843	chrM:11602:+	MT-CO1	6015	chrM:6540:+	INCL_NON_REF_SPLICE	YES	20558	30860	0	0	0.0475	0.1582	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCAS_OVARY	0	0	0.2057	FALSE	19	92	11	16	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND4--MT-RNR2	5	2	MT-ND4	1209	chrM:10968:+	MT-RNR2	5415	chrM:1707:+	INCL_NON_REF_SPLICE	NO	16875	0	0	1	0.0791	0.0316	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MCAS_OVARY	0	1	0.1107	FALSE	13	19	3	21	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND6--MT-TE	3	10	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0.1582	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MCAS_OVARY	1	1	0.2057	FALSE	499	1288	110	792	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND5--MT-ND6	5	1	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	2	4000	0.75	0	0.0791	0.0158	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	MCAS_OVARY	0	0.75	0.0949	FALSE	26	124	4	93	0	FALSE	ACH-000796
MCAS_OVARY	C15orf57--CBX3	4	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	21	29	0.28	0.22	0.0633	0.0633	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MCAS_OVARY	0.22	0.28	0.1266	TRUE	267	562	48	632	0	FALSE	ACH-000796
MCAS_OVARY	IGF2BP2--LIPH	3	8	IGF2BP2	3513	chr3:185538800:-	LIPH	27832	chr3:185252920:-	ONLY_REF_SPLICE	YES	133	58	0.08	0.16	0.0475	0.1266	NEIGHBORS[91126],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,LIPH->chr3:185224050-185270401:-,lipase_H	MCAS_OVARY	0.08	0.16	0.1741	FALSE	0	0	0	1	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0791	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MCAS_OVARY	1	1	0.0791	FALSE	499	1288	110	792	0	FALSE	ACH-000796
MCAS_OVARY	SEMA3A--ARFGEF2	1	16	SEMA3A	18041	chr7:83634655:-	ARFGEF2	36502	chr20:47567860:+	ONLY_REF_SPLICE	YES	388	99	0.04	0.15	0.0158	0.2532	{Klijn_CCL:Ovary=1},SEMA3A->chr7:83585093-84122040:-,semaphorin_3A,ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+	MCAS_OVARY	0.04	0.15	0.269	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	SGCE--PPP4R1L	5	0	SGCE	1220	chr7:94285302:-	PPP4R1L	25021	chr20:56826920:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0791	0	SGCE->chr7:94214542-94285521:-,sarcoglycan_epsilon,PPP4R1L->chr20:56806188-56884495:-,protein_phosphatase_4_regulatory_subunit_1_like_(pseudogene)	MCAS_OVARY	1	1	0.0791	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	WBSCR22--SEMA3A	5	0	WBSCR22	1649	chr7:73098003:+	SEMA3A	33755	chr7:83634874:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0791	0	{Klijn_CCL:Ovary=1},WBSCR22->Williams-Beuren_syndrome_chromosome_region_22,chr7:73097355-73119491:+,SEMA3A->chr7:83585093-84122040:-,semaphorin_3A	MCAS_OVARY	1	1	0.0791	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	AC004893.11--GS1-124K5.10	4	1	AC004893.11	2791	chr7:98612578:+	GS1-124K5.10	14762	chr7:65978252:+	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.0633	0.0158	AC004893.11->chr7:98610788-98645863:+,GS1-124K5.10->chr7:65976543-66010053:+	MCAS_OVARY	0.56	1	0.0791	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	MT-ATP6--MT-CO1	4	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	11920	31626	0	0	0.0633	0.0158	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCAS_OVARY	0	0	0.0791	FALSE	183	104	9	328	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND1--MT-RNR2	3	5	MT-ND1	1201	chrM:3507:+	MT-RNR2	5564	chrM:2278:+	INCL_NON_REF_SPLICE	NO	27	13247	0.23	0	0.0475	0.0791	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MCAS_OVARY	0	0.23	0.1266	FALSE	120	26	5	87	0	FALSE	ACH-000796
MCAS_OVARY	AC104389.28--HBE1	2	8	AC104389.28	3440	chr11:5367003:-	HBE1	14230	chr11:5290906:-	ONLY_REF_SPLICE	YES	157	127	0.06	0.07	0.0316	0.1266	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MCAS_OVARY	0.06	0.07	0.1582	TRUE	0	48	0	65	48	FALSE	ACH-000796
MCAS_OVARY	ADAM9--SSPN	3	4	ADAM9	13215	chr8:38884329:+	SSPN	33067	chr12:26332929:+	ONLY_REF_SPLICE	YES	585	0	0.01	1	0.0475	0.0633	{Klijn_CCL:Ovary=1},ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	MCAS_OVARY	0.01	1	0.1108	TRUE	0	0	0	1	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0633	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MCAS_OVARY	1	1	0.0633	FALSE	344	821	44	306	0	FALSE	ACH-000796
MCAS_OVARY	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0633	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MCAS_OVARY	1	1	0.0633	FALSE	292	1546	117	613	0	FALSE	ACH-000796
MCAS_OVARY	MT-ATP6--MT-CO1	3	3	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	6739	29468	0	0	0.0475	0.0475	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCAS_OVARY	0	0	0.095	FALSE	183	104	9	328	0	FALSE	ACH-000796
MCAS_OVARY	MT-ATP6--MT-CO1	3	2	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	13863	29497	0	0	0.0475	0.0316	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCAS_OVARY	0	0	0.0791	FALSE	183	104	9	328	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND4--MT-CO1	3	2	MT-ND4	1219	chrM:10978:+	MT-CO1	5922	chrM:6447:+	INCL_NON_REF_SPLICE	YES	16962	29612	0	0	0.0475	0.0316	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCAS_OVARY	0	0	0.0791	FALSE	19	89	11	16	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND4--MT-RNR2	3	2	MT-ND4	1754	chrM:11513:+	MT-RNR2	5925	chrM:2217:+	INCL_NON_REF_SPLICE	NO	20548	13882	0	0	0.0475	0.0316	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MCAS_OVARY	0	0	0.0791	FALSE	13	19	3	21	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND4--MT-RNR2	3	2	MT-ND4	1216	chrM:10975:+	MT-RNR2	5386	chrM:1678:+	INCL_NON_REF_SPLICE	YES	16836	0	0	1	0.0475	0.0316	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MCAS_OVARY	0	1	0.0791	FALSE	13	19	3	21	0	FALSE	ACH-000796
MCAS_OVARY	STAG3L1--ADNP	3	2	STAG3L1	4957	chr7:74994912:+	ADNP	21625	chr20:49511049:-	ONLY_REF_SPLICE	YES	88	88	0.05	0.05	0.0475	0.0316	STAG3L1->chr7:74988448-75024657:+,stromal_antigen_3-like_1_(pseudogene),ADNP->activity-dependent_neuroprotector_homeobox,chr20:49505585-49547958:-	MCAS_OVARY	0.05	0.05	0.0791	TRUE	0	0	0	1	0	FALSE	ACH-000796
MCAS_OVARY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	11652	31008	0	0	0.0475	0.0158	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCAS_OVARY	0	0	0.0633	FALSE	183	104	9	328	0	FALSE	ACH-000796
MCAS_OVARY	OSBPL9--TTC34	2	5	OSBPL9	5662	chr1:52117713:+	TTC34	45321	chr1:2577002:-	ONLY_REF_SPLICE	YES	145	0	0.05	1	0.0316	0.0791	OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,TTC34->chr1:2567415-2718286:-,tetratricopeptide_repeat_domain_34	MCAS_OVARY	0.05	1	0.1107	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	WBSCR22--SEMA3A	1	9	WBSCR22	1877	chr7:73098231:+	SEMA3A	32610	chr7:83636813:-	ONLY_REF_SPLICE	YES	247	413	0.04	0.02	0.0158	0.1424	{Klijn_CCL:Ovary=1},WBSCR22->Williams-Beuren_syndrome_chromosome_region_22,chr7:73097355-73119491:+,SEMA3A->chr7:83585093-84122040:-,semaphorin_3A	MCAS_OVARY	0.02	0.04	0.1582	TRUE	0	0	0	1	0	FALSE	ACH-000796
MCAS_OVARY	AC002066.1--AC073130.1	3	0	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0475	0	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	MCAS_OVARY	1	1	0.0475	FALSE	0	3	0	33	0	FALSE	ACH-000796
MCAS_OVARY	AC104389.28--HBE1	3	0	AC104389.28	1093	chr11:5526790:-	HBE1	13750	chr11:5291386:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MCAS_OVARY	1	1	0.0475	TRUE	0	16	0	53	13	FALSE	ACH-000796
MCAS_OVARY	BCAR3--RP11-488P3.1	3	0	BCAR3	2227	chr1:94311123:-	RP11-488P3.1	30475	chr1:94219902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0475	0	NEIGHBORS_OVERLAP:-:-:[22520],BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,RP11-488P3.1->chr1:94218480-94241000:-	MCAS_OVARY	1	1	0.0475	FALSE	0	0	0	3	0	FALSE	ACH-000796
MCAS_OVARY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1146	chrM:8672:+	MT-CO1	5945	chrM:7167:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCAS_OVARY	1	1	0.0475	FALSE	183	104	9	328	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND3--MT-TG	3	0	MT-ND3	1026	chrM:10084:+	MT-TG	4396	chrM:10040:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	MCAS_OVARY	1	1	0.0475	FALSE	97	9	0	14	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND4--MT-ND4L	3	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MCAS_OVARY	1	1	0.0475	FALSE	344	821	44	306	0	FALSE	ACH-000796
MCAS_OVARY	MT-ND4--MT-RNR2	3	0	MT-ND4	1261	chrM:11020:+	MT-RNR2	5926	chrM:2218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MCAS_OVARY	1	1	0.0475	FALSE	13	19	3	21	0	FALSE	ACH-000796
MCAS_OVARY	NCOR2--UBC	3	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0475	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	MCAS_OVARY	1	1	0.0475	TRUE	145	312	16	51	0	FALSE	ACH-000796
MCAS_OVARY	AC104389.28--HBE1	1	7	AC104389.28	2337	chr11:5368106:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	56	2	0.12	0.8	0.0158	0.1108	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MCAS_OVARY	0.12	0.8	0.1266	TRUE	0	0	0	9	0	TRUE	ACH-000796
MCAS_OVARY	ADNP--ADAM9	2	2	ADNP	2771	chr20:49545188:-	ADAM9	29798	chr8:38899465:+	ONLY_REF_SPLICE	YES	41	585	0.09	0.01	0.0316	0.0316	ADNP->activity-dependent_neuroprotector_homeobox,chr20:49505585-49547958:-,ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+	MCAS_OVARY	0.01	0.09	0.0632	FALSE	0	0	0	1	0	FALSE	ACH-000796
MCAS_OVARY	IGF2BP2--LIPH	1	6	IGF2BP2	1274	chr3:185542571:-	LIPH	27832	chr3:185252920:-	ONLY_REF_SPLICE	YES	125	58	0.05	0.11	0.0158	0.0949	NEIGHBORS[91126],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,LIPH->chr3:185224050-185270401:-,lipase_H	MCAS_OVARY	0.05	0.11	0.1107	FALSE	0	0	0	1	0	FALSE	ACH-000796
MCAS_OVARY	RP11-114H23.1--RP11-114H23.2	2	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0316	0.0158	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	MCAS_OVARY	0.75	1	0.0474	FALSE	81	155	12	160	0	FALSE	ACH-000796
MCAS_OVARY	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0316	0.0158	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MCAS_OVARY	0.75	1	0.0474	FALSE	515	4851	409	746	0	FALSE	ACH-000796
MCAS_OVARY	AC104389.28--HBE1	2	0	AC104389.28	1084	chr11:5526799:-	HBE1	14230	chr11:5290906:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MCAS_OVARY	1	1	0.0316	TRUE	0	16	0	53	13	FALSE	ACH-000796
MCAS_OVARY	ADAM9--SSPN	2	0	ADAM9	14387	chr8:38899636:+	SSPN	41300	chr12:26405801:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	{Klijn_CCL:Ovary=1},ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	MCAS_OVARY	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	BAIAP2L1--TRRAP	2	0	BAIAP2L1	3164	chr7:97991669:-	TRRAP	28982	chr7:98495364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-,TRRAP->chr7:98475556-98610866:+,transformation/transcription_domain_associated_protein	MCAS_OVARY	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	FAM60A--YWHAZ	2	0	FAM60A	4052	chr12:31476878:-	YWHAZ	26999	chr8:101937267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta	MCAS_OVARY	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	GAS6--TFDP1	2	0	GAS6	1499	chr13:114566548:-	TFDP1	22838	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_Transformed_fibroblasts=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	MCAS_OVARY	1	1	0.0316	TRUE	0	1	0	5	0	TRUE	ACH-000796
MCAS_OVARY	NRIP1--AF127936.7	2	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MCAS_OVARY	1	1	0.0316	FALSE	164	806	69	479	0	FALSE	ACH-000796
MCAS_OVARY	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MCAS_OVARY	1	1	0.0316	FALSE	125	705	46	456	0	FALSE	ACH-000796
MCAS_OVARY	OSBPL9--TTC34	2	0	OSBPL9	6741	chr1:52135184:+	TTC34	46406	chr1:2575917:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,TTC34->chr1:2567415-2718286:-,tetratricopeptide_repeat_domain_34	MCAS_OVARY	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MCAS_OVARY	1	1	0.0316	TRUE	465	1949	224	605	0	FALSE	ACH-000796
MCAS_OVARY	ADAM9--SSPN	1	2	ADAM9	14387	chr8:38899636:+	SSPN	38055	chr12:26383644:+	ONLY_REF_SPLICE	YES	499	4	0.01	0.43	0.0158	0.0316	{Klijn_CCL:Ovary=1},ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	MCAS_OVARY	0.01	0.43	0.0474	FALSE	0	0	0	1	0	FALSE	ACH-000796
MCAS_OVARY	CTD-2021J15.1--ST3GAL6	1	2	CTD-2021J15.1	3703	chr3:98737406:+	ST3GAL6	19751	chr3:98503789:+	ONLY_REF_SPLICE	NO	0	3	1	0.5	0.0158	0.0316	LOCAL_REARRANGEMENT:+:[81223],CTD-2021J15.1->chr3:98621268-98737406:+,ST3GAL6->ST3_beta-galactoside_alpha-2,3-sialyltransferase_6,chr3:98451080-98540045:+	MCAS_OVARY	0.5	1	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	GTF2IRD1--IKBKB	1	2	GTF2IRD1	1387	chr7:73868506:+	IKBKB	36119	chr8:42146152:+	ONLY_REF_SPLICE	NO	18	41	0.14	0.07	0.0158	0.0316	GTF2IRD1->GTF2I_repeat_domain_containing_1,chr7:73868120-74016931:+,IKBKB->chr8:42128820-42189973:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_beta	MCAS_OVARY	0.07	0.14	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000796
MCAS_OVARY	RP11-115J23.1--RP11-466I1.1	1	2	RP11-115J23.1	2304	chr11:28763455:+	RP11-466I1.1	11749	chr11:29181739:+	ONLY_REF_SPLICE	NO	7	0	0.3	1	0.0158	0.0316	NEIGHBORS[96135],RP11-115J23.1->chr11:28724162-29085368:+,RP11-466I1.1->chr11:29181503-29288281:+	MCAS_OVARY	0.3	1	0.0474	FALSE	0	0	0	1	0	FALSE	ACH-000796
MCAS_OVARY	RP11-115J23.1--RP11-466I1.1	1	2	RP11-115J23.1	2304	chr11:28763455:+	RP11-466I1.1	12826	chr11:29233202:+	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0158	0.0316	NEIGHBORS[96135],RP11-115J23.1->chr11:28724162-29085368:+,RP11-466I1.1->chr11:29181503-29288281:+	MCAS_OVARY	0.3	1	0.0474	FALSE	0	0	0	3	0	FALSE	ACH-000796
MCAS_OVARY	RP11-115J23.1--RP11-466I1.1	1	2	RP11-115J23.1	4468	chr11:29059363:+	RP11-466I1.1	12826	chr11:29233202:+	ONLY_REF_SPLICE	NO	4	0	0.43	1	0.0158	0.0316	NEIGHBORS[96135],RP11-115J23.1->chr11:28724162-29085368:+,RP11-466I1.1->chr11:29181503-29288281:+	MCAS_OVARY	0.43	1	0.0474	FALSE	0	0	0	4	0	FALSE	ACH-000796
MCAS_OVARY	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0158	0.0316	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MCAS_OVARY	0.75	1	0.0474	FALSE	407	2205	196	549	0	FALSE	ACH-000796
MCAS_OVARY	AC027119.1--AC026167.1	1	1	AC027119.1	1674	chr3:6005202:+	AC026167.1	6915	chr3:6400588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0.0158	NEIGHBORS[24364],AC027119.1->chr3:6004529-6165807:+,AC026167.1->chr3:6190171-6407572:+	MCAS_OVARY	1	1	0.0316	FALSE	1	37	1	9	0	FALSE	ACH-000796
MCAS_OVARY	BCAR3--RP11-488P3.1	1	1	BCAR3	11906	chr1:94107860:-	RP11-488P3.1	30475	chr1:94219902:-	ONLY_REF_SPLICE	YES	92	19	0.02	0.1	0.0158	0.0158	NEIGHBORS_OVERLAP:-:-:[22520],BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,RP11-488P3.1->chr1:94218480-94241000:-	MCAS_OVARY	0.02	0.1	0.0316	FALSE	0	0	0	3	0	FALSE	ACH-000796
MCAS_OVARY	CDK14--ARFGEF2	1	1	CDK14	14948	chr7:90419967:+	ARFGEF2	57704	chr20:47614873:+	ONLY_REF_SPLICE	YES	36	45	0.05	0.04	0.0158	0.0158	CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14,ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+	MCAS_OVARY	0.04	0.05	0.0316	TRUE	0	0	0	1	0	FALSE	ACH-000796
MCAS_OVARY	EPS8--ATF7IP	1	1	EPS8	3576	chr12:15942095:-	ATF7IP	46146	chr12:14576843:+	ONLY_REF_SPLICE	YES	92	28	0.02	0.07	0.0158	0.0158	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},EPS8->Oncogene{Bushman},chr12:15773092-16035263:-,epidermal_growth_factor_receptor_pathway_substrate_8,ATF7IP->Oncogene{Bushman},activating_transcription_factor_7_interacting_protein,chr12:14518610-14651697:+	MCAS_OVARY	0.02	0.07	0.0316	TRUE	0	1	0	1	0	FALSE	ACH-000796
MCAS_OVARY	FAM208B--GDI2	1	1	FAM208B	24623	chr10:5791990:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	NO	90	498	0.02	0	0.0158	0.0158	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	MCAS_OVARY	0	0.02	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000796
MCAS_OVARY	GTF2IRD1--IKBKB	1	1	GTF2IRD1	1387	chr7:73868506:+	IKBKB	37214	chr8:42147674:+	ONLY_REF_SPLICE	YES	18	57	0.1	0.03	0.0158	0.0158	GTF2IRD1->GTF2I_repeat_domain_containing_1,chr7:73868120-74016931:+,IKBKB->chr8:42128820-42189973:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_beta	MCAS_OVARY	0.03	0.1	0.0316	TRUE	0	0	0	1	0	FALSE	ACH-000796
MCAS_OVARY	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0.0158	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	MCAS_OVARY	1	1	0.0316	FALSE	81	155	12	160	0	FALSE	ACH-000796
MCAS_OVARY	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0.0158	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MCAS_OVARY	1	1	0.0316	FALSE	467	2173	244	435	0	FALSE	ACH-000796
MCAS_OVARY	TIMM17B--PLP2	1	1	TIMM17B	2385	chrX:48754042:-	PLP2	11075	chrX:49030682:+	ONLY_REF_SPLICE	NO	224	581	0.01	0	0.0158	0.0158	TIMM17B->chrX:48750730-48755426:-,translocase_of_inner_mitochondrial_membrane_17_homolog_B_(yeast),PLP2->chrX:49028273-49031588:+,proteolipid_protein_2_(colonic_epithelium-enriched)	MCAS_OVARY	0	0.01	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000796
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--AC096579.7	1388	2075	IGKV1-39	1313	chr2:89619592:-	AC096579.7	7244	chr2:89157196:-	INCL_NON_REF_SPLICE	YES	4	0	1	1	13.1041	19.5901	GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	32.6942	TRUE	2	49	3	3	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	116	40	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0952	0.3776	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.4728	TRUE	508	994	45	981	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--IGLL5	96	27	PVT1	21462	chr8:129095036:+	IGLL5	28831	chr22:23230339:+	INCL_NON_REF_SPLICE	YES	8	0	0.94	1	0.9063	0.2549	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	1.1612	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	71	38	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	43	57	0.72	0.66	0.6703	0.3588	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	0.72	1.0291	TRUE	181	1564	124	196	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--IGLL5	70	41	PVT1	21556	chr8:129095130:+	IGLL5	28829	chr22:23230337:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.6609	0.3871	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	1.048	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	73	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	162	6	0.32	0.93	0.6892	0.0378	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.93	0.727	TRUE	519	3926	326	965	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	58	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5476	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5476	TRUE	0	0	0	518	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	26	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2455	0.0378	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2833	FALSE	462	80	0	856	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	11	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	41	12	0.25	0.54	0.1039	0.0283	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.54	0.1322	TRUE	267	562	48	632	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0755	0.0378	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1133	FALSE	499	1288	110	792	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	6	3	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	23	0	0.28	1	0.0566	0.0283	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	1	0.0849	FALSE	272	151	14	158	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0566	0.0094	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.066	FALSE	499	1288	110	792	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VAPB--APCDD1L-AS1	5	2	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	29152	chr20:57122868:+	ONLY_REF_SPLICE	YES	129	1	0.05	0.88	0.0472	0.0189	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.88	0.0661	FALSE	1	3	0	4	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	4	4	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0.0378	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0756	TRUE	0	1	0	84	1	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0472	TRUE	22	156	2	142	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	4	3	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.0378	0.0283	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0661	TRUE	62	24	1	171	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf25--DAZAP1	4	1	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	60	260	0.08	0.02	0.0378	0.0094	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.08	0.0472	TRUE	6	7	1	24	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-319G9.5--WWOX	4	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	60	1	0.08	0.0378	0.0094	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0472	FALSE	154	425	28	76	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VAPB--APCDD1L-AS1	3	5	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	25288	chr20:57098225:+	ONLY_REF_SPLICE	YES	129	0	0.06	1	0.0283	0.0472	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0755	FALSE	0	1	0	5	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	3	4	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0.0378	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0661	TRUE	0	1	0	84	1	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0378	FALSE	462	80	0	856	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	3	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0283	0.0283	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0566	FALSE	0	9	0	55	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0283	0.0283	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0566	FALSE	16	356	14	466	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HCG4P5--EEF2	3	2	HCG4P5	1523	chr6:29910322:-	EEF2	5033	chr19:3985428:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0283	0.0189	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0472	TRUE	0	0	0	3	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VAPB--APCDD1L-AS1	1	9	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	22387	chr20:57094560:+	ONLY_REF_SPLICE	YES	129	0	0.07	1	0.0094	0.085	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0944	FALSE	0	0	0	3	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--PTMA	3	0	AC096579.7	4062	chr2:89156856:-	PTMA	10062	chr2:232573242:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	AC096579.7->chr2:89130700-89165653:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	3	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CYFIP2--MT-RNR2	3	0	CYFIP2	6536	chr5:156712488:+	MT-RNR2	48449	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	CYFIP2->chr5:156693089-156822606:+,cytoplasmic_FMR1_interacting_protein_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	FALSE	0	0	0	1	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FERMT3--UBAP2	3	0	FERMT3	8968	chr11:63991231:+	UBAP2	36900	chr9:33933550:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	FERMT3->chr11:63974150-63991354:+,fermitin_family_member_3,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--MT-ATP8	3	0	IGL@	18262	chr22:22712481:+	MT-ATP8	74816	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	IGL@->Oncogene{Bushman},MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	FALSE	0	0	0	1	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--MT-ATP8	3	0	IGL@	22835	chr22:22735587:+	MT-ATP8	74816	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	IGL@->Oncogene{Bushman},MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	FALSE	0	0	0	1	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTHFD2--SEPT2	3	0	MTHFD2	1181	chr2:74425869:+	SEPT2	31723	chr2:242289488:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	MTHFD2->chr2:74425689-74444692:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_2,_methenyltetrahydrofolate_cyclohydrolase,SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RLF--MYCL	3	0	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	10	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A11--B2M	3	0	SLC25A11	1406	chr17:4843141:-	B2M	9602	chr15:45007640:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	SLC25A11->chr17:4840425-4843546:-,solute_carrier_family_25_member_11,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VAPB--APCDD1L-AS1	3	0	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	31664	chr20:57193796:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	FALSE	2	12	0	8	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INPP5D--MROH2A	1	5	INPP5D	8439	chr2:233995358:+	MROH2A	39240	chr2:234687991:+	ONLY_REF_SPLICE	YES	115	0	0.05	1	0.0094	0.0472	INPP5D->chr2:233924677-234116549:+,inositol_polyphosphate-5-phosphatase_D,MROH2A->chr2:234684370-234742069:+,maestro_heat_like_repeat_family_member_2A	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0566	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYH9--EIF3D	2	1	MYH9	27169	chr22:36694965:-	EIF3D	48461	chr22:36920779:-	ONLY_REF_SPLICE	YES	366	660	0.01	0	0.0189	0.0094	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0283	FALSE	0	0	0	1	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWOX--RP11-319G9.5	2	1	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	61	0	0.05	1	0.0189	0.0094	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0283	FALSE	33	33	2	19	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARID1B--TMEM242	2	0	ARID1B	8327	chr6:157256710:+	TMEM242	43957	chr6:157714031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_v2:{count=1;pct=0.01%;dist=Bladder=1},ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+,TMEM242->chr6:157710418-157744633:-,transmembrane_protein_242	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASCC1--FCRL1	2	0	ASCC1	10097	chr10:73956569:-	FCRL1	27774	chr1:157772454:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,FCRL1->Fc_receptor_like_1,chr1:157764193-157789895:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASTN2--PSMG3	2	0	ASTN2	19387	chr9:119449345:-	PSMG3	38317	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	ASTN2->Oncogene{Bushman},astrotactin_2,chr9:119187504-120177348:-,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C11orf58--RRAS2	2	0	C11orf58	3845	chr11:16760388:+	RRAS2	28288	chr11:14317401:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	C11orf58->chr11:16634679-16778428:+,chromosome_11_open_reading_frame_58,RRAS2->Oncogene{Bushman},chr11:14299472-14386052:-,related_RAS_viral_(r-ras)_oncogene_homolog_2	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C9orf64--COX7A2	2	0	C9orf64	2606	chr9:86570296:-	COX7A2	15655	chr6:75947704:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	C9orf64->chr9:86553226-86571901:-,chromosome_9_open_reading_frame_64,COX7A2->chr6:75947391-75960039:-,cytochrome_c_oxidase_subunit_7A2	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD38--ATP6AP1L	2	0	CD38	1373	chr4:15780270:+	ATP6AP1L	25003	chr5:81605976:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CD38->CD38_molecule,chr4:15779898-15854853:+,ATP6AP1L->ATPase_H+_transporting_accessory_protein_1_like,chr5:81575281-81682796:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD53--LBR	2	0	CD53	4334	chr1:111435155:+	LBR	23988	chr1:225599142:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CD53->CD53_molecule,Oncogene{Bushman},chr1:111415775-111442550:+,LBR->chr1:225589204-225616627:-,lamin_B_receptor	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC25C--UBE2D2	2	0	CDC25C	3286	chr5:137666676:-	UBE2D2	24347	chr5:139006341:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CDC25C->Oncogene{Bushman},cell_division_cycle_25C,chr5:137620954-137674044:-,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT2--PSMB1	2	0	CNOT2	1487	chr12:70637260:+	PSMB1	37790	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-459F4.3--PHF8	2	0	CTC-459F4.3	5385	chr19:28289084:+	PHF8	25566	chrX:54037717:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CTC-459F4.3->chr19:28284371-28409771:+,PHF8->PHD_finger_protein_8,chrX:53963109-54075391:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC15--TMEM141	2	0	DNAJC15	1532	chr13:43597870:+	TMEM141	12084	chr9:139686163:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	DNAJC15->DnaJ_heat_shock_protein_family_(Hsp40)_member_C15,chr13:43597339-43683045:+,TMEM141->chr9:139685807-139687709:+,transmembrane_protein_141	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--PASK	2	0	EEF2	1092	chr19:3985376:-	PASK	31269	chr2:242054828:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,PASK->PAS_domain_containing_serine/threonine_kinase,chr2:242045514-242089679:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FXR1--USP13	2	0	FXR1	3131	chr3:180630524:+	USP13	54524	chr3:179499527:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},{Klijn_CCL:Lung=1},FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+,USP13->chr3:179370543-179507189:+,ubiquitin_specific_peptidase_13_(isopeptidase_T-3)	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GATS--PILRB	2	0	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	57	41	2	35	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GS1-259H13.10--BRCA1	2	0	GS1-259H13.10	2283	chr7:99158318:+	BRCA1	33767	chr17:41215968:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GS1-259H13.10->chr7:99156291-99205433:+,BRCA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_1,chr17:41196312-41277500:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTDC1--EEF1D	2	0	GTDC1	11556	chr2:144966170:-	EEF1D	50356	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HPS1--HNRNPA1	2	0	HPS1	3352	chr10:100202881:-	HNRNPA1	26597	chr12:54677596:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	HPS1->HPS1,_biogenesis_of_lysosomal_organelles_complex_3_subunit_1,chr10:100175955-100206684:-,HNRNPA1->chr12:54673977-54680872:+,heterogeneous_nuclear_ribonucleoprotein_A1	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--RP11-141M1.3	2	0	IGLL5	1480	chr22:23230439:+	RP11-141M1.3	11800	chr13:34098509:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,RP11-141M1.3->chr13:33929343-34250905:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00338--TUBGCP6	2	0	LINC00338	4678	chr17:75089429:+	TUBGCP6	22953	chr22:50658444:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	LINC00338->chr17:75082798-75091068:+,TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LZTS2--RP11-1055B8.7	2	0	LZTS2	1617	chr10:102756991:+	RP11-1055B8.7	22038	chr17:79405396:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	LZTS2->chr10:102756375-102767593:+,leucine_zipper,_putative_tumor_suppressor_2,RP11-1055B8.7->chr17:79373540-79433357:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--PDIA5	2	0	MLLT10	1640	chr10:21823733:+	PDIA5	38421	chr3:122808015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,PDIA5->chr3:122785909-122944074:+,protein_disulfide_isomerase_family_A_member_5	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MRRF--SNRPC	2	0	MRRF	7692	chr9:125054119:+	SNRPC	19146	chr6:34741223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	MRRF->chr9:125026882-125085743:+,mitochondrial_ribosome_recycling_factor,SNRPC->chr6:34725183-34741571:+,small_nuclear_ribonucleoprotein_polypeptide_C	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	FALSE	292	1546	117	613	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP205--MARCH5	2	0	NUP205	19998	chr7:135289208:+	MARCH5	53007	chr10:94110848:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	NUP205->chr7:135242667-135333505:+,nucleoporin_205kDa,MARCH5->chr10:94050920-94113721:+,membrane_associated_ring-CH-type_finger_5	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCED1B--HMGB1	2	0	PCED1B	3674	chr12:47610472:+	HMGB1	15615	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PCED1B->PC-esterase_domain_containing_1B,chr12:47473386-47630443:+,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDAP1--ATP5J2	2	0	PDAP1	1294	chr7:99006159:-	ATP5J2	14961	chr7:99057816:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	LOCAL_REARRANGEMENT:-:[39646],PDAP1->PDGFA_associated_protein_1,chr7:98989671-99006452:-,ATP5J2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_F2,chr7:99046098-99063954:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDS5B--FOXO1	2	0	PDS5B	1167	chr13:33160730:+	FOXO1	51275	chr13:41134997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLD3--C11orf30	2	0	POLD3	3687	chr11:74305161:+	C11orf30	38810	chr11:76224430:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	POLD3->chr11:74204896-74380162:+,polymerase_(DNA)_delta_3,_accessory_subunit,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKD3--GSR	2	0	PRKD3	5408	chr2:37520276:-	GSR	37307	chr8:30557652:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PRKD3->chr2:37477645-37551951:-,protein_kinase_D3,GSR->chr8:30535583-30585443:-,glutathione_reductase	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB1B--KIF2C	2	0	RAB1B	2825	chr11:66039931:+	KIF2C	22803	chr1:45228018:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RAB1B->RAB1B,_member_RAS_oncogene_family,chr11:66036004-66044963:+,KIF2C->chr1:45205490-45233439:+,kinesin_family_member_2C	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB3GAP2--METTL3	2	0	RAB3GAP2	10995	chr1:220384143:-	METTL3	52302	chr14:21967281:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RAB3GAP2->RAB3_GTPase_activating_non-catalytic_protein_subunit_2,chr1:220321635-220445796:-,METTL3->chr14:21966277-21979517:-,methyltransferase_like_3	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RASA2--PER3	2	0	RASA2	6648	chr3:141272782:+	PER3	37004	chr1:7854017:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,PER3->chr1:7844380-7905237:+,period_circadian_clock_3	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-620J15.3--SFI1	2	0	RP11-620J15.3	1706	chr12:58329253:-	SFI1	24759	chr22:31979861:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RP11-620J15.3->chr12:58325311-58329958:-,SFI1->SFI1_centrin_binding_protein,chr22:31884674-32014572:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL7L1--ZNF451	2	0	RPL7L1	6133	chr6:42852488:+	ZNF451	35502	chr6:56999542:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RPL7L1->chr6:42847356-42857663:+,ribosomal_protein_L7_like_1,ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEP15--C4orf21	2	0	SEP15	1397	chr1:87379711:-	C4orf21	29133	chr4:113511030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SEP15->chr1:87328132-87380107:-,C4orf21->chr4:113460492-113558151:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SH3TC1--ACAD8	2	0	SH3TC1	20030	chr4:8230371:+	ACAD8	41934	chr11:134134802:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SH3TC1->SH3_domain_and_tetratricopeptide_repeats_1,chr4:8183799-8243530:+,ACAD8->acyl-CoA_dehydrogenase_family_member_8,chr11:134123389-134135749:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A45--HP1BP3	2	0	SLC25A45	2827	chr11:65149346:-	HP1BP3	19519	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SLC25A45->chr11:65142663-65151172:-,solute_carrier_family_25_member_45,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX1--SIMC1	2	0	SNX1	16733	chr15:64429131:+	SIMC1	33690	chr5:175716657:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SNX1->chr15:64386322-64438289:+,sorting_nexin_1,SIMC1->SUMO_interacting_motifs_containing_1,chr5:175665365-175772994:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRGAP2B--ZNF431	2	0	SRGAP2B	6684	chr1:144094424:+	ZNF431	22051	chr19:21372668:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+,ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBCK--TIAL1	2	0	TBCK	10151	chr4:107181594:-	TIAL1	51464	chr10:121347760:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-,TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THRAP3--MINOS1	2	0	THRAP3	1090	chr1:36690106:+	MINOS1	25997	chr1:19948594:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMX3--RTTN	2	0	TMX3	4617	chr18:66377258:-	RTTN	63013	chr18:67733158:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	TMX3->chr18:66340925-66382535:-,thioredoxin_related_transmembrane_protein_3,RTTN->chr18:67671029-67873181:-,rotatin	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM16--SEPHS1	2	0	TRIM16	5362	chr17:15580490:-	SEPHS1	22254	chr10:13387028:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	TRIM16->chr17:15531274-15587625:-,tripartite_motif_containing_16,SEPHS1->chr10:13359424-13390297:-,selenophosphate_synthetase_1	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR18--TMED7	2	0	WDR18	3501	chr19:985975:+	TMED7	12747	chr5:114961679:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	WDR18->WD_repeat_domain_18,chr19:983174-994569:+,TMED7->chr5:114949205-114968689:-,transmembrane_p24_trafficking_protein_7	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR27--FUS	2	0	WDR27	4147	chr6:170072351:-	FUS	45268	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	WDR27->WD_repeat_domain_27,chr6:169857307-170102159:-,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF175--WIPI2	2	0	ZNF175	4754	chr19:52085135:+	WIPI2	23500	chr7:5265454:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	ZNF175->chr19:52074551-52092991:+,zinc_finger_protein_175,WIPI2->WD_repeat_domain,_phosphoinositide_interacting_2,chr7:5229819-5273457:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF519--MIB1	2	0	ZNF519	2343	chr18:14124349:-	MIB1	25156	chr18:19345733:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--C12orf65	2	0	ZNF738	7035	chr19:21558766:+	C12orf65	19930	chr12:123738194:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,C12orf65->chr12:123717463-123742506:+,chromosome_12_open_reading_frame_65	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0094	0.0189	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	FALSE	275	511	55	178	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0094	0.0189	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	FALSE	515	4851	409	746	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VAPB--APCDD1L-AS1	1	2	VAPB	6860	chr20:57009761:+	APCDD1L-AS1	29152	chr20:57122868:+	ONLY_REF_SPLICE	YES	144	1	0.02	0.75	0.0094	0.0189	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.75	0.0283	FALSE	0	1	0	1	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR62--FXYD5	1	2	WDR62	23875	chr19:36585066:+	FXYD5	44063	chr19:35660469:+	ONLY_REF_SPLICE	YES	76	104	0.04	0.03	0.0094	0.0189	WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+,FXYD5->FXYD_domain_containing_ion_transport_regulator_5,Oncogene{Bushman},chr19:35645633-35660786:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.0283	TRUE	0	0	0	1	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP6C--AATF	1	1	ATP6C	1218	chr16:2564183:+	AATF	11307	chr17:35343916:+	ONLY_REF_SPLICE	YES	0	309	1	0.01	0.0094	0.0094	ATP6C->chr16:2563966-2577956:+,AATF->Oncogene{Bushman},apoptosis_antagonizing_transcription_factor,chr17:35306175-35414171:+	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DESI2--CNST	1	1	DESI2	1421	chr1:244816657:+	CNST	15451	chr1:246754814:+	ONLY_REF_SPLICE	NO	12	29	0.14	0.06	0.0094	0.0094	DESI2->chr1:244816237-244872335:+,desumoylating_isopeptidase_2,CNST->chr1:246729746-246831886:+,consortin,_connexin_sorting_protein	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.14	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGF14-IT1--FGF14	1	1	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0094	0.0094	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0188	TRUE	71	201	23	28	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXK2--B3GNTL1	1	1	FOXK2	6226	chr17:80529746:+	B3GNTL1	30252	chr17:80972395:-	ONLY_REF_SPLICE	YES	98	27	0.02	0.07	0.0094	0.0094	FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.07	0.0188	TRUE	0	0	0	1	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPA2B1--MCM7	1	1	HNRNPA2B1	1958	chr7:26240192:-	MCM7	22948	chr7:99691024:-	ONLY_REF_SPLICE	YES	1799	1528	0	0	0.0094	0.0094	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPM--PSMA7	1	1	HNRNPM	5233	chr19:8528570:+	PSMA7	24480	chr20:60716000:-	ONLY_REF_SPLICE	YES	638	1351	0	0	0.0094	0.0094	HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MINOS1--N4BP2L2	1	1	MINOS1	1127	chr1:19923603:+	N4BP2L2	25141	chr13:33096407:-	ONLY_REF_SPLICE	YES	41	127	0.05	0.02	0.0094	0.0094	MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.0188	TRUE	0	0	0	1	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--IGLL5	1	1	PVT1	13955	chr8:129001537:+	IGLL5	31054	chr22:23237555:+	ONLY_REF_SPLICE	NO	84	0	0.02	1	0.0094	0.0094	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0188	TRUE	0	0	0	1	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--MYC	1	1	PVT1	8346	chr8:128903244:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	110	631	0.02	0	0.0094	0.0094	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0188	FALSE	0	5	0	7	2	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--MYC	1	1	PVT1	8346	chr8:128903244:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	NO	110	602	0.02	0	0.0094	0.0094	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0188	FALSE	0	5	0	7	2	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RLF--MYCL	1	1	RLF	1264	chr1:40627308:+	MYCL	18060	chr1:40367115:-	ONLY_REF_SPLICE	YES	27	0	0.07	1	0.0094	0.0094	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0188	TRUE	0	0	0	6	0	TRUE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS19--HNRNPUL1	1	1	RPS19	2294	chr19:42365281:+	HNRNPUL1	15696	chr19:41774128:+	ONLY_REF_SPLICE	YES	4439	160	0	0.01	0.0094	0.0094	{Klijn_CCL:Lung=1,Colo-Rectal=1},RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19,HNRNPUL1->chr19:41768401-41813503:+,heterogeneous_nuclear_ribonucleoprotein_U_like_1	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000656
SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF292--SYNCRIP	1	1	ZNF292	2606	chr6:87865477:+	SYNCRIP	31313	chr6:86351169:-	ONLY_REF_SPLICE	NO	58	271	0.03	0.01	0.0094	0.0094	ZNF292->chr6:87862551-87973914:+,zinc_finger_protein_292,SYNCRIP->chr6:86318053-86353510:-,synaptotagmin_binding_cytoplasmic_RNA_interacting_protein	SUDHL8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000656
NCIH854_LUNG	SKIL--CCNL1	267	85	SKIL	4752	chr3:170079217:+	CCNL1	24650	chr3:156870030:-	ONLY_REF_SPLICE	YES	30	82	0.92	0.81	2.9035	0.9243	SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+,CCNL1->chr3:156864297-156878549:-,cyclin_L1	NCIH854_LUNG	0.81	0.92	3.8278	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	PHC3--CCNL1	74	30	PHC3	5524	chr3:169889161:-	CCNL1	45318	chr3:156868170:-	ONLY_REF_SPLICE	YES	13	112	0.89	0.48	0.8047	0.3262	PHC3->chr3:169804520-169899537:-,polyhomeotic_homolog_3,CCNL1->chr3:156864297-156878549:-,cyclin_L1	NCIH854_LUNG	0.48	0.89	1.1309	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	TSC22D2--RP11-139K4.2	78	14	TSC22D2	3974	chr3:150129095:+	RP11-139K4.2	22456	chr3:182216211:-	ONLY_REF_SPLICE	YES	15	0	0.86	1	0.8482	0.1522	TSC22D2->TSC22_domain_family_member_2,chr3:150126122-150184218:+,RP11-139K4.2->chr3:182216052-182224912:-	NCIH854_LUNG	0.86	1	1.0004	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	TIMM23B--LINC00843	62	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6742	0.2284	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH854_LUNG	1	1	0.9026	TRUE	508	994	45	981	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ND4L	5	149	MT-ND4	1180	chrM:10939:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	7	0	0.96	1	0.0544	1.6203	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0.96	1	1.6747	FALSE	344	826	44	306	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ND4L	3	146	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	5	0	0.97	1	0.0326	1.5877	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0.97	1	1.6203	FALSE	344	826	44	306	0	FALSE	ACH-000710
NCIH854_LUNG	TIMM23--RP11-464F9.1	39	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	101	3	0.28	0.93	0.4241	0.0109	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH854_LUNG	0.28	0.93	0.435	TRUE	519	3926	326	965	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ND4L	5	124	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0544	1.3484	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0.98	1	1.4028	FALSE	344	826	44	306	0	FALSE	ACH-000710
NCIH854_LUNG	MT-TA--MT-TC	35	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3806	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH854_LUNG	1	1	0.3806	FALSE	462	80	0	856	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND6--MT-TE	32	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.348	0.0217	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH854_LUNG	1	1	0.3697	FALSE	499	1288	110	792	0	FALSE	ACH-000710
NCIH854_LUNG	TRAPPC9--RP11-501O2.5	29	9	TRAPPC9	9369	chr8:141407719:-	RP11-501O2.5	68476	chr3:148006722:+	ONLY_REF_SPLICE	YES	73	0	0.34	1	0.3154	0.0979	TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,RP11-501O2.5->chr3:147998678-148117743:+	NCIH854_LUNG	0.34	1	0.4133	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ND4L	3	101	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0326	1.0983	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0.98	1	1.1309	FALSE	344	821	44	306	0	FALSE	ACH-000710
NCIH854_LUNG	MIPEPP3--ABHD12	28	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3045	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	NCIH854_LUNG	1	1	0.3045	TRUE	64	202	9	44	0	FALSE	ACH-000710
NCIH854_LUNG	SENP7--MLLT10P1	23	8	SENP7	12734	chr3:101080559:-	MLLT10P1	31976	chr20:29638054:-	INCL_NON_REF_SPLICE	YES	11	0	0.74	1	0.2501	0.087	SENP7->SUMO1/sentrin_specific_peptidase_7,chr3:101043049-101232085:-,MLLT10P1->chr20:29637799-29638060:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10_pseudogene_1	NCIH854_LUNG	0.74	1	0.3371	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	LINC01014--KCNMB2	24	3	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.261	0.0326	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH854_LUNG	0.96	1	0.2936	FALSE	11	60	26	37	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	19	15	MT-CO1	1642	chrM:6545:+	MUC2	22496	chr11:1092828:+	INCL_NON_REF_SPLICE	YES	15555	24	0	0.59	0.2066	0.1631	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0.59	0.3697	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	19	13	MUC2	18171	chr11:1093045:+	MT-CO1	33001	chrM:6557:+	INCL_NON_REF_SPLICE	YES	11597	16124	0	0	0.2066	0.1414	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.348	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND6--MT-TE	17	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.1849	0.1305	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH854_LUNG	0.94	1	0.3154	FALSE	499	1288	110	792	0	FALSE	ACH-000710
NCIH854_LUNG	WARS2--NRD1	18	1	WARS2	1117	chr1:119683178:-	NRD1	16778	chr1:52306186:-	ONLY_REF_SPLICE	YES	7	58	0.73	0.25	0.1957	0.0109	WARS2->chr1:119573839-119683294:-,tryptophanyl_tRNA_synthetase_2,_mitochondrial,NRD1->chr1:52254863-52344477:-	NCIH854_LUNG	0.25	0.73	0.2066	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ND4L	8	39	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	7230	0	0.01	1	0.087	0.4241	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0.01	1	0.5111	FALSE	328	800	43	304	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-ND4L	11	25	MUC2	18576	chr11:1093450:+	MT-ND4L	32494	chrM:10616:+	INCL_NON_REF_SPLICE	YES	2997	2748	0.01	0.01	0.1196	0.2719	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0.01	0.01	0.3915	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	14	10	MT-CO1	1642	chrM:6545:+	MUC2	22565	chr11:1092897:+	INCL_NON_REF_SPLICE	YES	15555	893	0	0.03	0.1522	0.1087	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0.03	0.2609	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND6--MT-TE	16	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.174	0.0217	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH854_LUNG	1	1	0.1957	FALSE	499	1288	110	792	0	FALSE	ACH-000710
NCIH854_LUNG	NMD3--TMEM212	13	12	NMD3	7384	chr3:160951267:+	TMEM212	24236	chr3:171569772:+	ONLY_REF_SPLICE	YES	133	0	0.16	1	0.1414	0.1305	NMD3->NMD3_ribosome_export_adaptor,chr3:160822484-160971320:+,TMEM212->chr3:171561139-171656505:+,transmembrane_protein_212	NCIH854_LUNG	0.16	1	0.2719	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	8	31	MT-CO1	1957	chrM:6860:+	MUC2	22518	chr11:1092850:+	INCL_NON_REF_SPLICE	YES	16333	20	0	0.66	0.087	0.3371	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0.66	0.4241	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	15	3	MT-CO1	1642	chrM:6545:+	MUC2	23048	chr11:1093380:+	INCL_NON_REF_SPLICE	YES	15555	4372	0	0	0.1631	0.0326	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0	0.1957	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	SKIL--CCNL1	6	37	SKIL	4752	chr3:170079217:+	CCNL1	24961	chr3:156869719:-	ONLY_REF_SPLICE	YES	30	87	0.59	0.33	0.0652	0.4024	SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+,CCNL1->chr3:156864297-156878549:-,cyclin_L1	NCIH854_LUNG	0.33	0.59	0.4676	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	CCSER1--RP11-115D19.1	15	0	CCSER1	6160	chr4:91234198:+	RP11-115D19.1	41644	chr4:90508972:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1631	0	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	NCIH854_LUNG	1	1	0.1631	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	EEF2--RPS28	15	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1631	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH854_LUNG	1	1	0.1631	TRUE	0	0	0	100	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	13	8	MT-CO1	1642	chrM:6545:+	MUC2	22634	chr11:1092966:+	INCL_NON_REF_SPLICE	YES	15555	7117	0	0	0.1414	0.087	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0	0.2284	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	10	18	MT-CO1	1653	chrM:6556:+	MUC2	22508	chr11:1092840:+	INCL_NON_REF_SPLICE	YES	15999	20	0	0.58	0.1087	0.1957	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0.58	0.3044	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	RP6-114E22.1--RGS6	12	10	RP6-114E22.1	2401	chr14:72375151:+	RGS6	7262	chr14:72431489:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1305	0.1087	NEIGHBORS[24009],RP6-114E22.1->chr14:72315323-72375147:+,RGS6->chr14:72399156-73030654:+,regulator_of_G-protein_signaling_6	NCIH854_LUNG	1	1	0.2392	FALSE	0	1	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	14	1	MT-CO1	1642	chrM:6545:+	MUC2	23255	chr11:1093587:+	INCL_NON_REF_SPLICE	YES	15555	2231	0	0.01	0.1522	0.0109	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0.01	0.1631	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	LINC01014--KCNMB2	13	4	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1414	0.0435	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH854_LUNG	0.94	1	0.1849	FALSE	12	33	18	33	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	9	20	MT-CO1	1699	chrM:6602:+	MUC2	22573	chr11:1092905:+	INCL_NON_REF_SPLICE	YES	15535	1640	0	0.02	0.0979	0.2175	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0.02	0.3154	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ATP8	14	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1522	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH854_LUNG	1	1	0.1522	FALSE	230	198	14	283	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	8	23	MT-CO1	1653	chrM:6556:+	MUC2	22478	chr11:1092810:+	INCL_NON_REF_SPLICE	YES	15999	24	0	0.56	0.087	0.2501	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0.56	0.3371	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	RFX7--RP11-356M20.1	12	7	RFX7	3247	chr15:56471468:-	RP11-356M20.1	22807	chr15:59700353:-	ONLY_REF_SPLICE	YES	11	0	0.63	1	0.1305	0.0761	RFX7->chr15:56379478-56535483:-,regulatory_factor_X7,RP11-356M20.1->chr15:59699162-59700353:-	NCIH854_LUNG	0.63	1	0.2066	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	RP6-114E22.1--RGS6	13	3	RP6-114E22.1	1131	chr14:72315453:+	RGS6	7262	chr14:72431489:+	ONLY_REF_SPLICE	YES	3	0	0.84	1	0.1414	0.0326	NEIGHBORS[24009],RP6-114E22.1->chr14:72315323-72375147:+,RGS6->chr14:72399156-73030654:+,regulator_of_G-protein_signaling_6	NCIH854_LUNG	0.84	1	0.174	FALSE	0	1	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	10	14	MT-CO1	1653	chrM:6556:+	MUC2	22577	chr11:1092909:+	INCL_NON_REF_SPLICE	YES	15999	1975	0	0.01	0.1087	0.1522	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0.01	0.2609	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ND4L	3	40	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0326	0.435	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0.98	1	0.4676	FALSE	344	821	44	306	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	6	27	MUC2	18733	chr11:1093607:+	MT-CO1	33008	chrM:6564:+	INCL_NON_REF_SPLICE	YES	2024	15765	0.02	0	0.0652	0.2936	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.02	0.3588	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-ND4L	7	23	MUC2	18507	chr11:1093381:+	MT-ND4L	32494	chrM:10616:+	INCL_NON_REF_SPLICE	YES	4157	2748	0.01	0.01	0.0761	0.2501	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0.01	0.01	0.3262	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	11	6	MT-CO1	1642	chrM:6545:+	MUC2	22772	chr11:1093104:+	INCL_NON_REF_SPLICE	YES	15555	13969	0	0	0.1196	0.0652	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0	0.1848	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	9	14	MUC2	18387	chr11:1093261:+	MT-CO1	33025	chrM:6581:+	INCL_NON_REF_SPLICE	YES	11945	16247	0	0	0.0979	0.1522	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.2501	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	TSC22D2--SPTSSB	11	6	TSC22D2	3974	chr3:150129095:+	SPTSSB	22224	chr3:161077682:-	ONLY_REF_SPLICE	YES	15	10	0.53	0.63	0.1196	0.0652	TSC22D2->TSC22_domain_family_member_2,chr3:150126122-150184218:+,SPTSSB->chr3:161062580-161090668:-,serine_palmitoyltransferase_small_subunit_B	NCIH854_LUNG	0.53	0.63	0.1848	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	9	13	MUC2	18249	chr11:1093123:+	MT-CO1	33025	chrM:6581:+	INCL_NON_REF_SPLICE	YES	13807	16247	0	0	0.0979	0.1414	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.2393	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	6	23	MT-CO1	1957	chrM:6860:+	MUC2	22587	chr11:1092919:+	INCL_NON_REF_SPLICE	YES	16333	2629	0	0.01	0.0652	0.2501	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0.01	0.3153	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	10	6	MT-CO1	1642	chrM:6545:+	MUC2	22910	chr11:1093242:+	INCL_NON_REF_SPLICE	YES	15555	13557	0	0	0.1087	0.0652	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0	0.1739	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	8	14	MUC2	18456	chr11:1093330:+	MT-CO1	33025	chrM:6581:+	INCL_NON_REF_SPLICE	YES	7840	16247	0	0	0.087	0.1522	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.2392	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-ND4L	3	34	MUC2	28212	chr11:1103284:+	MT-ND4L	32349	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2264	0	0.02	1	0.0326	0.3697	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0.02	1	0.4023	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-ND4L	7	18	MUC2	18438	chr11:1093312:+	MT-ND4L	32494	chrM:10616:+	INCL_NON_REF_SPLICE	YES	9172	2748	0	0.01	0.0761	0.1957	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0	0.01	0.2718	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-ND4L	5	25	MUC2	18571	chr11:1093445:+	MT-ND4L	32488	chrM:10610:+	INCL_NON_REF_SPLICE	YES	2968	2519	0.01	0.01	0.0544	0.2719	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0.01	0.01	0.3263	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-ND4L	5	25	MUC2	18573	chr11:1093447:+	MT-ND4L	32491	chrM:10613:+	INCL_NON_REF_SPLICE	YES	2973	2738	0.01	0.01	0.0544	0.2719	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0.01	0.01	0.3263	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	5	24	MUC2	18703	chr11:1093577:+	MT-CO1	32981	chrM:6537:+	INCL_NON_REF_SPLICE	YES	2381	15141	0.01	0	0.0544	0.261	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.01	0.3154	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	7	15	MT-CO1	1653	chrM:6556:+	MUC2	22547	chr11:1092879:+	INCL_NON_REF_SPLICE	YES	15999	52	0	0.3	0.0761	0.1631	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0.3	0.2392	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	3	31	MT-CO1	1917	chrM:6820:+	MUC2	22472	chr11:1092804:+	INCL_NON_REF_SPLICE	YES	16675	24	0	0.59	0.0326	0.3371	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0.59	0.3697	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	7	15	MUC2	18525	chr11:1093399:+	MT-CO1	33025	chrM:6581:+	INCL_NON_REF_SPLICE	YES	3336	16247	0.01	0	0.0761	0.1631	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.01	0.2392	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	9	6	MT-CO1	1642	chrM:6545:+	MUC2	22703	chr11:1093035:+	INCL_NON_REF_SPLICE	YES	15555	10927	0	0	0.0979	0.0652	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0	0.1631	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	6	18	MUC2	18457	chr11:1093331:+	MT-CO1	33008	chrM:6564:+	INCL_NON_REF_SPLICE	YES	7814	15765	0	0	0.0652	0.1957	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.2609	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	6	18	MUC2	18385	chr11:1093259:+	MT-CO1	32978	chrM:6534:+	INCL_NON_REF_SPLICE	YES	11982	14679	0	0	0.0652	0.1957	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.2609	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	7	13	MT-CO1	1699	chrM:6602:+	MUC2	22918	chr11:1093250:+	INCL_NON_REF_SPLICE	YES	15535	12948	0	0	0.0761	0.1414	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0	0.2175	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	9	5	MT-CO1	1642	chrM:6545:+	MUC2	22979	chr11:1093311:+	INCL_NON_REF_SPLICE	YES	15555	9550	0	0	0.0979	0.0544	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0	0.1523	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	PCBP1--TFF3	10	1	PCBP1	1906	chr2:70315490:+	TFF3	7207	chr21:43733697:-	INCL_NON_REF_SPLICE	YES	794	6930	0.01	0	0.1087	0.0109	PCBP1->chr2:70314585-70316332:+,poly(rC)_binding_protein_1,TFF3->Oncogene{Bushman},chr21:43731777-43735761:-,trefoil_factor_3	NCIH854_LUNG	0	0.01	0.1196	TRUE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	3	28	MT-CO1	1699	chrM:6602:+	MUC2	22504	chr11:1092836:+	INCL_NON_REF_SPLICE	YES	15535	21	0	0.6	0.0326	0.3045	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0.6	0.3371	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	8	8	MUC2	18111	chr11:1092985:+	MT-CO1	33025	chrM:6581:+	INCL_NON_REF_SPLICE	YES	7890	16247	0	0	0.087	0.087	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.174	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	5	20	MUC2	18526	chr11:1093400:+	MT-CO1	33008	chrM:6564:+	INCL_NON_REF_SPLICE	YES	3348	15765	0.01	0	0.0544	0.2175	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.01	0.2719	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-ND4L	7	12	MUC2	18162	chr11:1093036:+	MT-ND4L	32494	chrM:10616:+	INCL_NON_REF_SPLICE	YES	10784	2748	0	0.01	0.0761	0.1305	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0	0.01	0.2066	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	3	27	MUC2	18722	chr11:1093596:+	MT-CO1	33000	chrM:6556:+	INCL_NON_REF_SPLICE	YES	2110	15982	0.01	0	0.0326	0.2936	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.01	0.3262	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND6--MT-TE	5	18	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0544	0.1957	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH854_LUNG	0.92	1	0.2501	FALSE	499	1288	110	792	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	4	22	MUC2	18770	chr11:1093644:+	MT-CO1	33024	chrM:6580:+	INCL_NON_REF_SPLICE	YES	1892	16135	0.01	0	0.0435	0.2392	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.01	0.2827	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	8	6	MUC2	18043	chr11:1092917:+	MT-CO1	33008	chrM:6564:+	INCL_NON_REF_SPLICE	YES	2449	15765	0.01	0	0.087	0.0652	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.01	0.1522	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	5	18	MUC2	18454	chr11:1093328:+	MT-CO1	32978	chrM:6534:+	INCL_NON_REF_SPLICE	YES	7959	14679	0	0	0.0544	0.1957	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.2501	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	4	21	MUC2	18565	chr11:1093439:+	MT-CO1	33008	chrM:6564:+	INCL_NON_REF_SPLICE	YES	2936	15765	0.01	0	0.0435	0.2284	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.01	0.2719	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	PHC3--CCNL1	3	25	PHC3	5507	chr3:169889178:-	CCNL1	45318	chr3:156868170:-	ONLY_REF_SPLICE	YES	12	112	0.7	0.2	0.0326	0.2719	PHC3->chr3:169804520-169899537:-,polyhomeotic_homolog_3,CCNL1->chr3:156864297-156878549:-,cyclin_L1	NCIH854_LUNG	0.2	0.7	0.3045	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ATP8	9	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0979	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH854_LUNG	1	1	0.0979	FALSE	230	193	14	283	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	8	4	MUC2	18042	chr11:1092916:+	MT-CO1	33025	chrM:6581:+	INCL_NON_REF_SPLICE	YES	2342	16247	0.01	0	0.087	0.0435	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.01	0.1305	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-ND4L	7	8	MUC2	18093	chr11:1092967:+	MT-ND4L	32494	chrM:10616:+	INCL_NON_REF_SPLICE	YES	7029	2748	0	0.01	0.0761	0.087	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0	0.01	0.1631	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	5	15	MT-CO1	1957	chrM:6860:+	MUC2	22932	chr11:1093264:+	INCL_NON_REF_SPLICE	YES	16333	12298	0	0	0.0544	0.1631	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0	0.2175	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	7	7	MT-CO1	1653	chrM:6556:+	MUC2	22922	chr11:1093254:+	INCL_NON_REF_SPLICE	YES	15999	12714	0	0	0.0761	0.0761	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0	0.1522	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ND4L	3	23	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6	0	0.81	1	0.0326	0.2501	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0.81	1	0.2827	FALSE	344	826	44	306	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-ND4L	8	3	MUC2	18024	chr11:1092898:+	MT-ND4L	32494	chrM:10616:+	INCL_NON_REF_SPLICE	YES	955	2748	0.01	0	0.087	0.0326	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0	0.01	0.1196	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND6--MT-TE	5	14	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0.1522	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH854_LUNG	1	1	0.2066	FALSE	499	1288	110	792	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	5	14	MUC2	18425	chr11:1093299:+	MT-CO1	33024	chrM:6580:+	INCL_NON_REF_SPLICE	YES	9980	16135	0	0	0.0544	0.1522	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.2066	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	5	14	MUC2	18287	chr11:1093161:+	MT-CO1	33024	chrM:6580:+	INCL_NON_REF_SPLICE	YES	14864	16135	0	0	0.0544	0.1522	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.2066	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-ND4L	4	18	MUC2	18369	chr11:1093243:+	MT-ND4L	32494	chrM:10616:+	INCL_NON_REF_SPLICE	YES	13040	2748	0	0.01	0.0435	0.1957	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0	0.01	0.2392	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-ND4L	5	14	MUC2	18231	chr11:1093105:+	MT-ND4L	32494	chrM:10616:+	INCL_NON_REF_SPLICE	YES	13606	2748	0	0.01	0.0544	0.1522	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0	0.01	0.2066	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	SEPT11--CCNG2	8	2	SEPT11	1228	chr4:77871083:+	CCNG2	30949	chr4:78079686:+	ONLY_REF_SPLICE	YES	43	87	0.19	0.1	0.087	0.0217	SEPT11->chr4:77870856-77961537:+,septin_11,CCNG2->chr4:78078304-78354542:+,cyclin_G2	NCIH854_LUNG	0.1	0.19	0.1087	TRUE	0	1	0	4	1	TRUE	ACH-000710
NCIH854_LUNG	STAG1--CBLB	8	2	STAG1	13772	chr3:136219065:-	CBLB	54953	chr3:105456102:-	ONLY_REF_SPLICE	YES	11	14	0.48	0.42	0.087	0.0217	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,CBLB->Cbl_proto-oncogene_B,Oncogene{Bushman},chr3:105374305-105588396:-	NCIH854_LUNG	0.42	0.48	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	7	5	MT-CO1	1653	chrM:6556:+	MUC2	23060	chr11:1093392:+	INCL_NON_REF_SPLICE	YES	15999	3701	0	0	0.0761	0.0544	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0	0.1305	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	3	21	MUC2	18732	chr11:1093606:+	MT-CO1	33025	chrM:6581:+	INCL_NON_REF_SPLICE	NO	2005	16247	0.01	0	0.0326	0.2284	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.01	0.261	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	3	21	MUC2	18570	chr11:1093444:+	MT-CO1	32986	chrM:6542:+	INCL_NON_REF_SPLICE	YES	2989	15489	0.01	0	0.0326	0.2284	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.01	0.261	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	3	21	MUC2	18634	chr11:1093508:+	MT-CO1	33008	chrM:6564:+	INCL_NON_REF_SPLICE	YES	2487	15765	0.01	0	0.0326	0.2284	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.01	0.261	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	4	17	MUC2	18247	chr11:1093121:+	MT-CO1	32978	chrM:6534:+	INCL_NON_REF_SPLICE	YES	13776	14679	0	0	0.0435	0.1849	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.2284	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MT-TA--MT-TC	8	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.087	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH854_LUNG	1	1	0.087	FALSE	462	80	0	856	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	5	12	MUC2	18112	chr11:1092986:+	MT-CO1	33008	chrM:6564:+	INCL_NON_REF_SPLICE	YES	7941	15765	0	0	0.0544	0.1305	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.1849	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	RP11-108K3.1--GLDN	7	4	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.0761	0.0435	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH854_LUNG	0.85	1	0.1196	FALSE	0	14	0	30	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	3	19	MT-CO1	1957	chrM:6860:+	MUC2	22794	chr11:1093126:+	INCL_NON_REF_SPLICE	YES	16333	14355	0	0	0.0326	0.2066	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0	0.2392	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	4	15	MUC2	18494	chr11:1093368:+	MT-CO1	33024	chrM:6580:+	INCL_NON_REF_SPLICE	YES	4706	16135	0	0	0.0435	0.1631	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.2066	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	3	19	MUC2	18523	chr11:1093397:+	MT-CO1	32978	chrM:6534:+	INCL_NON_REF_SPLICE	YES	3380	14679	0.01	0	0.0326	0.2066	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.01	0.2392	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	7	2	MUC2	17973	chr11:1092847:+	MT-CO1	33025	chrM:6581:+	INCL_NON_REF_SPLICE	YES	21	16247	0.3	0	0.0761	0.0217	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.3	0.0978	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	4	14	MUC2	18318	chr11:1093192:+	MT-CO1	33025	chrM:6581:+	INCL_NON_REF_SPLICE	NO	15163	16247	0	0	0.0435	0.1522	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.1957	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND6--MT-TE	4	13	MT-ND6	1096	chrM:14578:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0.1414	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH854_LUNG	1	1	0.1849	FALSE	499	1288	110	792	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ND4L	5	8	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	18	0	0.42	1	0.0544	0.087	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	0.42	1	0.1414	FALSE	344	827	44	306	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	3	16	MUC2	18563	chr11:1093437:+	MT-CO1	33024	chrM:6580:+	INCL_NON_REF_SPLICE	YES	2932	16135	0.01	0	0.0326	0.174	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.01	0.2066	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	4	12	MUC2	18109	chr11:1092983:+	MT-CO1	32978	chrM:6534:+	INCL_NON_REF_SPLICE	YES	7842	14679	0	0	0.0435	0.1305	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.174	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	6	4	MUC2	18040	chr11:1092914:+	MT-CO1	32978	chrM:6534:+	INCL_NON_REF_SPLICE	YES	2224	14679	0	0	0.0652	0.0435	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.1087	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	4	11	MT-CO1	1653	chrM:6556:+	MUC2	22646	chr11:1092978:+	INCL_NON_REF_SPLICE	YES	15999	7808	0	0	0.0435	0.1196	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0	0.1631	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	3	15	MUC2	18575	chr11:1093449:+	MT-CO1	33040	chrM:6596:+	INCL_NON_REF_SPLICE	YES	2991	15805	0.01	0	0.0326	0.1631	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.01	0.1957	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	3	14	MUC2	18437	chr11:1093311:+	MT-CO1	33040	chrM:6596:+	INCL_NON_REF_SPLICE	YES	9269	15805	0	0	0.0326	0.1522	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.1848	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ATP8	6	1	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	9826	0	0	1	0.0652	0.0109	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH854_LUNG	0	1	0.0761	FALSE	231	217	16	283	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	3	13	MUC2	18181	chr11:1093055:+	MT-CO1	33008	chrM:6564:+	INCL_NON_REF_SPLICE	YES	12011	15765	0	0	0.0326	0.1414	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.174	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	4	9	MUC2	18149	chr11:1093023:+	MT-CO1	33024	chrM:6580:+	INCL_NON_REF_SPLICE	YES	9892	16135	0	0	0.0435	0.0979	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.1414	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	4	8	MT-CO1	1653	chrM:6556:+	MUC2	22889	chr11:1093221:+	INCL_NON_REF_SPLICE	NO	15999	14658	0	0	0.0435	0.087	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0	0.1305	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0652	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH854_LUNG	1	1	0.0652	FALSE	462	80	0	856	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	5	4	MUC2	18080	chr11:1092954:+	MT-CO1	33024	chrM:6580:+	INCL_NON_REF_SPLICE	YES	6145	16135	0	0	0.0544	0.0435	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.0979	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0652	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH854_LUNG	1	1	0.0652	FALSE	292	1546	117	613	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	5	2	MT-CO1	1642	chrM:6545:+	MUC2	23078	chr11:1093410:+	INCL_NON_REF_SPLICE	NO	15555	3496	0	0	0.0544	0.0217	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0	0.0761	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	8378	7	0	0.5	0.0544	0.0217	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH854_LUNG	0	0.5	0.0761	FALSE	231	217	16	283	0	FALSE	ACH-000710
NCIH854_LUNG	RP11-108K3.1--GLDN	5	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0544	0.0217	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH854_LUNG	0.88	1	0.0761	FALSE	1	20	0	46	0	FALSE	ACH-000710
NCIH854_LUNG	RP6-114E22.1--RGS6	3	10	RP6-114E22.1	2397	chr14:72375147:+	RGS6	7262	chr14:72431489:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0.1087	NEIGHBORS[24009],RP6-114E22.1->chr14:72315323-72375147:+,RGS6->chr14:72399156-73030654:+,regulator_of_G-protein_signaling_6	NCIH854_LUNG	1	1	0.1413	FALSE	0	1	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	FOXA2--MT-CO3	5	1	FOXA2	4366	chr20:22562691:-	MT-CO3	8620	chrM:9412:+	INCL_NON_REF_SPLICE	YES	115	6150	0.05	0	0.0544	0.0109	FOXA2->chr20:22561643-22566093:-,forkhead_box_A2,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH854_LUNG	0	0.05	0.0653	FALSE	0	0	0	3	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	3	9	MT-CO1	1699	chrM:6602:+	MUC2	23030	chr11:1093362:+	INCL_NON_REF_SPLICE	YES	15535	5391	0	0	0.0326	0.0979	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0	0.1305	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	3	8	MT-CO1	1957	chrM:6860:+	MUC2	23070	chr11:1093402:+	INCL_NON_REF_SPLICE	YES	16333	3412	0	0	0.0326	0.087	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0	0.1196	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-CO1--MUC2	3	8	MT-CO1	1653	chrM:6556:+	MUC2	22892	chr11:1093224:+	INCL_NON_REF_SPLICE	YES	15999	14479	0	0	0.0326	0.087	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming	NCIH854_LUNG	0	0	0.1196	FALSE	2	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH854_LUNG	1	1	0.0544	FALSE	231	205	14	283	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ATP8	4	4	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	8061	0	0	1	0.0435	0.0435	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH854_LUNG	0	1	0.087	FALSE	231	217	16	283	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-ND4L	5	0	MUC2	17955	chr11:1092829:+	MT-ND4L	32494	chrM:10616:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	1	1	0.0544	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	4	2	MUC2	17971	chr11:1092845:+	MT-CO1	32978	chrM:6534:+	INCL_NON_REF_SPLICE	YES	21	14679	0.22	0	0.0435	0.0217	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.22	0.0652	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	3	6	MUC2	18092	chr11:1092966:+	MT-CO1	33040	chrM:6596:+	INCL_NON_REF_SPLICE	YES	7006	15805	0	0	0.0326	0.0652	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.0978	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	2288	chrM:12047:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	11	0	0.42	1	0.0326	0.0544	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH854_LUNG	0.42	1	0.087	FALSE	213	207	15	279	0	FALSE	ACH-000710
NCIH854_LUNG	EIF1--RPS28	4	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH854_LUNG	1	1	0.0435	TRUE	0	0	0	81	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH854_LUNG	1	1	0.0435	FALSE	231	217	16	283	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0435	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH854_LUNG	1	1	0.0435	FALSE	499	1288	110	792	0	FALSE	ACH-000710
NCIH854_LUNG	RP11-108K3.1--GLDN	3	4	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0326	0.0435	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH854_LUNG	0.78	1	0.0761	FALSE	0	19	0	46	0	FALSE	ACH-000710
NCIH854_LUNG	RP11-120D5.1--MID1	4	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0435	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH854_LUNG	1	1	0.0435	FALSE	16	356	14	466	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	2250	chrM:12009:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	1695	5	0	0.55	0.0326	0.0326	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH854_LUNG	0	0.55	0.0652	FALSE	216	209	16	281	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	7858	1770	0	0	0.0326	0.0217	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH854_LUNG	0	0	0.0543	FALSE	231	217	16	283	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7858	45	0	0.1	0.0326	0.0217	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH854_LUNG	0	0.1	0.0543	FALSE	231	217	16	283	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	8255	173	0	0.03	0.0326	0.0217	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH854_LUNG	0	0.03	0.0543	FALSE	231	217	16	283	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	3	2	MUC2	18023	chr11:1092897:+	MT-CO1	33040	chrM:6596:+	INCL_NON_REF_SPLICE	YES	872	15805	0.01	0	0.0326	0.0217	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.01	0.0543	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	3	2	MUC2	17974	chr11:1092848:+	MT-CO1	33008	chrM:6564:+	INCL_NON_REF_SPLICE	YES	21	15765	0.19	0	0.0326	0.0217	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.19	0.0543	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	3	2	MUC2	18011	chr11:1092885:+	MT-CO1	33024	chrM:6580:+	INCL_NON_REF_SPLICE	YES	223	16135	0.02	0	0.0326	0.0217	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0.02	0.0543	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	FOXA2--MT-CO3	3	1	FOXA2	4354	chr20:22562703:-	MT-CO3	8607	chrM:9399:+	INCL_NON_REF_SPLICE	YES	110	5423	0.04	0	0.0326	0.0109	FOXA2->chr20:22561643-22566093:-,forkhead_box_A2,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH854_LUNG	0	0.04	0.0435	FALSE	0	0	0	3	0	FALSE	ACH-000710
NCIH854_LUNG	JUP--EEF1G	3	1	JUP	7190	chr17:39925235:-	EEF1G	26020	chr11:62340142:-	INCL_NON_REF_SPLICE	YES	467	51	0.01	0.07	0.0326	0.0109	GTEx&tcga_normals:1/3694=0.03%,JUP->chr17:39775692-39943183:-,junction_plakoglobin,EEF1G->chr11:62327073-62342401:-,eukaryotic_translation_elongation_factor_1_gamma	NCIH854_LUNG	0.01	0.07	0.0435	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	MUC2--MT-CO1	3	1	MUC2	18029	chr11:1092903:+	MT-CO1	33290	chrM:6846:+	INCL_NON_REF_SPLICE	YES	1421	16761	0	0	0.0326	0.0109	MUC2->Oncogene{Bushman},chr11:1074875-1104419:+,mucin_2,_oligomeric_mucus/gel-forming,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	0	0	0.0435	FALSE	0	0	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	EIF1--RPS28	3	0	EIF1	1087	chr17:39845223:+	RPS28	8126	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH854_LUNG	1	1	0.0326	TRUE	0	0	0	81	0	FALSE	ACH-000710
NCIH854_LUNG	ITM2C--MT-CO1	3	0	ITM2C	5714	chr2:231741622:+	MT-CO1	11698	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	ITM2C->chr2:231729354-231743963:+,integral_membrane_protein_2C,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH854_LUNG	1	1	0.0326	FALSE	0	0	0	6	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH854_LUNG	1	1	0.0326	FALSE	231	205	14	283	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH854_LUNG	1	1	0.0326	FALSE	231	204	14	283	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1003	chrM:10762:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH854_LUNG	1	1	0.0326	FALSE	230	189	14	283	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1081	chrM:10840:+	MT-ATP8	5476	chrM:8463:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH854_LUNG	1	1	0.0326	FALSE	230	193	14	283	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH854_LUNG	1	1	0.0326	FALSE	231	204	14	283	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	1	1	0.0326	FALSE	344	821	44	306	0	FALSE	ACH-000710
NCIH854_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1007	chrM:10766:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH854_LUNG	1	1	0.0326	FALSE	344	821	44	306	0	FALSE	ACH-000710
NCIH854_LUNG	NDRG1--RPS18	3	0	NDRG1	17796	chr8:134262694:-	RPS18	31712	chr6:33239868:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	NDRG1->N-myc_downstream_regulated_1,Oncogene{Bushman},chr8:134249414-134314265:-,RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18	NCIH854_LUNG	1	1	0.0326	TRUE	0	0	0	2	0	TRUE	ACH-000710
NCIH854_LUNG	RP11-120D5.1--MID1	3	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH854_LUNG	1	1	0.0326	FALSE	0	48	1	163	0	FALSE	ACH-000710
NCIH854_LUNG	RP11-624L4.1--RP11-265N7.1	3	0	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	NCIH854_LUNG	1	1	0.0326	FALSE	0	20	1	20	0	FALSE	ACH-000710
NCIH854_LUNG	RP11-624L4.1--RP11-265N7.1	3	0	RP11-624L4.1	2165	chr15:39713110:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	NCIH854_LUNG	1	1	0.0326	FALSE	0	20	1	20	0	FALSE	ACH-000710
NCIH854_LUNG	RFX7--RP11-356M20.1	1	7	RFX7	4490	chr15:56452914:-	RP11-356M20.1	22807	chr15:59700353:-	ONLY_REF_SPLICE	YES	11	0	0.42	1	0.0109	0.0761	RFX7->chr15:56379478-56535483:-,regulatory_factor_X7,RP11-356M20.1->chr15:59699162-59700353:-	NCIH854_LUNG	0.42	1	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	APLP2--RP11-890B15.2	2	2	APLP2	7699	chr11:129980556:+	RP11-890B15.2	32063	chr11:130724787:-	ONLY_REF_SPLICE	YES	1022	0	0	1	0.0217	0.0217	APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+,RP11-890B15.2->chr11:130714086-130735456:-	NCIH854_LUNG	0	1	0.0434	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	RP11-108K3.1--GLDN	2	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0217	0.0217	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH854_LUNG	0.8	1	0.0434	FALSE	0	30	1	55	0	FALSE	ACH-000710
NCIH854_LUNG	CCDC122--ENOX1	2	1	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0217	0.0109	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	NCIH854_LUNG	0.3	1	0.0326	FALSE	39	52	2	34	0	FALSE	ACH-000710
NCIH854_LUNG	LINC01014--KCNMB2	2	1	LINC01014	1175	chr3:178137163:+	KCNMB2	14218	chr3:178543376:+	ONLY_REF_SPLICE	YES	1	3	0.75	0.5	0.0217	0.0109	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH854_LUNG	0.5	0.75	0.0326	FALSE	0	2	0	4	0	FALSE	ACH-000710
NCIH854_LUNG	LRP5--C11orf24	2	1	LRP5	6121	chr11:68133170:+	C11orf24	35199	chr11:68035719:-	ONLY_REF_SPLICE	YES	611	92	0	0.03	0.0217	0.0109	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:+:-:[40608],LRP5->LDL_receptor_related_protein_5,Oncogene{Bushman},chr11:68080077-68216743:+,C11orf24->chr11:68028803-68039469:-,chromosome_11_open_reading_frame_24	NCIH854_LUNG	0	0.03	0.0326	FALSE	0	2	0	3	1	FALSE	ACH-000710
NCIH854_LUNG	RP11-108K3.1--GLDN	2	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0217	0.0109	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH854_LUNG	0.75	1	0.0326	FALSE	1	20	0	46	0	FALSE	ACH-000710
NCIH854_LUNG	RP6-114E22.1--RGS6	2	1	RP6-114E22.1	1131	chr14:72315453:+	RGS6	8366	chr14:72818803:+	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0217	0.0109	NEIGHBORS[24009],RP6-114E22.1->chr14:72315323-72375147:+,RGS6->chr14:72399156-73030654:+,regulator_of_G-protein_signaling_6	NCIH854_LUNG	0.5	1	0.0326	FALSE	0	2	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	RP6-114E22.1--RGS6	1	5	RP6-114E22.1	2397	chr14:72375147:+	RGS6	8366	chr14:72818803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0109	0.0544	NEIGHBORS[24009],RP6-114E22.1->chr14:72315323-72375147:+,RGS6->chr14:72399156-73030654:+,regulator_of_G-protein_signaling_6	NCIH854_LUNG	1	1	0.0653	FALSE	0	3	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	ADAP1--SUN1	2	0	ADAP1	9672	chr7:959605:-	SUN1	48590	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	NCIH854_LUNG	1	1	0.0217	TRUE	0	4	0	9	2	TRUE	ACH-000710
NCIH854_LUNG	GNPDA2--TBCK	2	0	GNPDA2	1122	chr4:44728491:-	TBCK	53207	chr4:107037535:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GNPDA2->chr4:44684217-44728612:-,glucosamine-6-phosphate_deaminase_2,TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-	NCIH854_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	PLS1--U2SURP	2	0	PLS1	1123	chr3:142315351:+	U2SURP	33383	chr3:142729657:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	PLS1->chr3:142315229-142432506:+,plastin_1,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	NCIH854_LUNG	1	1	0.0217	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	RFX7--RP11-356M20.1	1	4	RFX7	1161	chr15:56535323:-	RP11-356M20.1	22807	chr15:59700353:-	ONLY_REF_SPLICE	NO	6	0	0.45	1	0.0109	0.0435	RFX7->chr15:56379478-56535483:-,regulatory_factor_X7,RP11-356M20.1->chr15:59699162-59700353:-	NCIH854_LUNG	0.45	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH854_LUNG	1	1	0.0217	FALSE	46	201	11	112	0	FALSE	ACH-000710
NCIH854_LUNG	TMEM181--DYNLT1	2	0	TMEM181	6914	chr6:159010814:+	DYNLT1	27019	chr6:159058926:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0217	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Testis=1},LOCAL_INVERSION:+:-:[1046],TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181,DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1	NCIH854_LUNG	1	1	0.0217	TRUE	0	5	0	4	0	TRUE	ACH-000710
NCIH854_LUNG	AC074363.1--B3GALT1	1	2	AC074363.1	2265	chr2:168346787:+	B3GALT1	6463	chr2:168675182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0109	0.0217	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	NCIH854_LUNG	1	1	0.0326	TRUE	0	4	2	6	4	TRUE	ACH-000710
NCIH854_LUNG	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	4	0	0.43	1	0.0109	0.0217	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH854_LUNG	0.43	1	0.0326	FALSE	164	806	69	479	0	FALSE	ACH-000710
NCIH854_LUNG	WARS2--NRD1	1	2	WARS2	1404	chr1:119682891:-	NRD1	16778	chr1:52306186:-	ONLY_REF_SPLICE	YES	1	58	0.75	0.05	0.0109	0.0217	WARS2->chr1:119573839-119683294:-,tryptophanyl_tRNA_synthetase_2,_mitochondrial,NRD1->chr1:52254863-52344477:-	NCIH854_LUNG	0.05	0.75	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000710
NCIH854_LUNG	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	35172	chr7:893046:+	ONLY_REF_SPLICE	YES	365	201	0.01	0.01	0.0109	0.0109	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	NCIH854_LUNG	0.01	0.01	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	24014	chr7:872142:+	ONLY_REF_SPLICE	YES	365	11	0.01	0.15	0.0109	0.0109	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	NCIH854_LUNG	0.01	0.15	0.0218	FALSE	0	1	0	6	0	FALSE	ACH-000710
NCIH854_LUNG	KLHL2--CPE	1	1	KLHL2	6709	chr4:166150065:+	CPE	31664	chr4:166385542:+	ONLY_REF_SPLICE	YES	13	1	0.13	0.67	0.0109	0.0109	NEIGHBORS[38038],KLHL2->chr4:166128770-166244308:+,kelch_like_family_member_2,CPE->carboxypeptidase_E,chr4:166282346-166419472:+	NCIH854_LUNG	0.13	0.67	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	LIMK2--SEC14L3	1	1	LIMK2	1186	chr22:31608410:+	SEC14L3	24776	chr22:30866569:-	ONLY_REF_SPLICE	NO	98	0	0.02	1	0.0109	0.0109	LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+,SEC14L3->SEC14_like_lipid_binding_3,chr22:30843946-30868036:-	NCIH854_LUNG	0.02	1	0.0218	TRUE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	MTX2--NFE2L2	1	1	MTX2	2025	chr2:177135147:+	NFE2L2	25995	chr2:178098999:-	ONLY_REF_SPLICE	NO	247	138	0.01	0.01	0.0109	0.0109	MTX2->chr2:177134123-177202753:+,metaxin_2,NFE2L2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:178092323-178257425:-,nuclear_factor,_erythroid_2_like_2	NCIH854_LUNG	0.01	0.01	0.0218	FALSE	0	1	0	2	0	FALSE	ACH-000710
NCIH854_LUNG	PTPRN2--ESYT2	1	1	PTPRN2	3463	chr7:158282427:-	ESYT2	35271	chr7:158591763:-	ONLY_REF_SPLICE	YES	135	41	0.01	0.05	0.0109	0.0109	PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,ESYT2->chr7:158523686-158622944:-,extended_synaptotagmin_protein_2	NCIH854_LUNG	0.01	0.05	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	RNF152--RP11-879F14.1	1	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	NO	4	0	0.33	1	0.0109	0.0109	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	NCIH854_LUNG	0.33	1	0.0218	FALSE	275	472	65	43	0	FALSE	ACH-000710
NCIH854_LUNG	RP11-1029J19.5--PPP2R5C	1	1	RP11-1029J19.5	1055	chr14:102197391:-	PPP2R5C	25246	chr14:102323023:+	ONLY_REF_SPLICE	YES	18	602	0.1	0	0.0109	0.0109	LOCAL_INVERSION:-:+:[30690],RP11-1029J19.5->chr14:102100791-102197445:-,PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma	NCIH854_LUNG	0	0.1	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	RP11-108K3.1--GLDN	1	1	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0109	0.0109	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH854_LUNG	0.5	1	0.0218	FALSE	0	14	0	30	0	FALSE	ACH-000710
NCIH854_LUNG	RP11-758M4.1--PI15	1	1	RP11-758M4.1	2222	chr8:75525175:+	PI15	17893	chr8:75756216:+	ONLY_REF_SPLICE	YES	9	3	0.18	0.4	0.0109	0.0109	NEIGHBORS[1224],RP11-758M4.1->chr8:75512010-75735548:+,PI15->chr8:75736772-75767264:+,peptidase_inhibitor_15	NCIH854_LUNG	0.18	0.4	0.0218	FALSE	0	0	0	4	0	FALSE	ACH-000710
NCIH854_LUNG	RP11-758M4.1--PI15	1	1	RP11-758M4.1	6573	chr8:75615917:+	PI15	17893	chr8:75756216:+	ONLY_REF_SPLICE	YES	6	3	0.25	0.4	0.0109	0.0109	NEIGHBORS[1224],RP11-758M4.1->chr8:75512010-75735548:+,PI15->chr8:75736772-75767264:+,peptidase_inhibitor_15	NCIH854_LUNG	0.25	0.4	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000710
NCIH854_LUNG	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	17	0	0.11	1	0.0109	0.0109	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH854_LUNG	0.11	1	0.0218	FALSE	272	151	14	158	0	FALSE	ACH-000710
A2780_OVARY	AP003900.6--AC008132.1	157	18	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	1	0	0.99	1	1.7403	0.1995	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	A2780_OVARY	0.99	1	1.9398	TRUE	0	0	0	25	0	FALSE	ACH-000657
A2780_OVARY	TIMM23B--LINC00843	101	44	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1195	0.4877	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	A2780_OVARY	1	1	1.6072	TRUE	508	994	45	981	0	FALSE	ACH-000657
A2780_OVARY	MT-TA--MT-TN	103	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1417	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A2780_OVARY	1	1	1.1417	FALSE	369	2501	205	193	0	FALSE	ACH-000657
A2780_OVARY	SLC1A5--MT-ND4L	85	16	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1062	0	0.09	1	0.9422	0.1774	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.09	1	1.1196	FALSE	0	0	0	189	0	FALSE	ACH-000657
A2780_OVARY	TIMM23--RP11-464F9.1	71	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	574	4	0.12	0.95	0.787	0.0776	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	A2780_OVARY	0.12	0.95	0.8646	TRUE	519	3926	326	965	0	FALSE	ACH-000657
A2780_OVARY	MT-TA--MT-TC	48	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5321	0.0887	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A2780_OVARY	1	1	0.6208	FALSE	462	80	0	856	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	9	141	MT-ND4	1489	chrM:11248:+	MT-ND4L	5394	chrM:10485:+	INCL_NON_REF_SPLICE	YES	1697	0	0.08	1	0.0998	1.5629	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.08	1	1.6627	FALSE	344	827	44	306	0	FALSE	ACH-000657
A2780_OVARY	ZNF654--HMGB2	42	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4655	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	A2780_OVARY	1	1	0.4655	TRUE	0	0	0	518	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	6	136	MT-ND4	1213	chrM:10972:+	MT-ND4L	5376	chrM:10467:+	INCL_NON_REF_SPLICE	YES	131	0	0.52	1	0.0665	1.5075	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.52	1	1.574	FALSE	344	826	44	306	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	4	140	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	1867	0	0.07	1	0.0443	1.5518	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.07	1	1.5961	FALSE	344	827	44	306	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	5	134	MT-ND4	1244	chrM:11003:+	MT-ND4L	5550	chrM:10641:+	INCL_NON_REF_SPLICE	YES	166	0	0.46	1	0.0554	1.4853	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.46	1	1.5407	FALSE	344	827	44	306	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	3	136	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	134	0	0.51	1	0.0333	1.5075	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.51	1	1.5408	FALSE	344	827	44	306	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	3	135	MT-ND4	1220	chrM:10979:+	MT-ND4L	5536	chrM:10627:+	INCL_NON_REF_SPLICE	YES	135	0	0.51	1	0.0333	1.4964	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.51	1	1.5297	FALSE	344	827	44	306	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	3	135	MT-ND4	1225	chrM:10984:+	MT-ND4L	5527	chrM:10618:+	INCL_NON_REF_SPLICE	YES	141	0	0.49	1	0.0333	1.4964	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.49	1	1.5297	FALSE	344	827	44	306	0	FALSE	ACH-000657
A2780_OVARY	CALM3--MT-ND4L	30	16	CALM3	7115	chr19:47112617:+	MT-ND4L	11561	chrM:10482:+	INCL_NON_REF_SPLICE	YES	2005	0	0.02	1	0.3325	0.1774	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.02	1	0.5099	FALSE	1	1	0	107	0	FALSE	ACH-000657
A2780_OVARY	RP11-680G10.1--GSE1	30	11	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	39	1	0.51	0.3325	0.1219	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A2780_OVARY	0.51	1	0.4544	TRUE	458	1351	185	561	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	32	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15900	10	0	0.77	0.3547	0.0222	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	0.77	0.3769	FALSE	230	193	14	283	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	3	94	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	15	0	0.87	1	0.0333	1.0419	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.87	1	1.0752	FALSE	344	821	44	306	0	FALSE	ACH-000657
A2780_OVARY	RP11-603B24.1--HERC2P3	19	23	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	16	1	0.72	0.2106	0.2549	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	A2780_OVARY	0.72	1	0.4655	TRUE	27	10	1	20	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	3	85	MT-ND4	1818	chrM:11577:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	13068	0	0.01	1	0.0333	0.9422	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.01	1	0.9755	FALSE	344	827	44	306	0	FALSE	ACH-000657
A2780_OVARY	MIPEPP3--ABHD12	24	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.266	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	A2780_OVARY	1	1	0.266	TRUE	64	202	9	44	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	3	84	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	28	0	0.76	1	0.0333	0.9311	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.76	1	0.9644	FALSE	344	826	44	306	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	3	84	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	298	0	0.23	1	0.0333	0.9311	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.23	1	0.9644	FALSE	344	827	44	306	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	14	30	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	13950	0	0	1	0.1552	0.3325	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0	1	0.4877	FALSE	328	800	43	304	0	FALSE	ACH-000657
A2780_OVARY	HSP90AB1--MT-RNR2	19	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	5221	0	0	1	0.2106	0.0333	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A2780_OVARY	0	1	0.2439	FALSE	13	9	0	364	0	FALSE	ACH-000657
A2780_OVARY	MT-TA--MT-TN	5	55	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0554	0.6096	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A2780_OVARY	1	1	0.665	FALSE	369	2501	205	193	0	FALSE	ACH-000657
A2780_OVARY	AP003900.6--AC008132.1	11	30	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	5	0	0.89	1	0.1219	0.3325	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	A2780_OVARY	0.89	1	0.4544	TRUE	1	1	0	28	1	FALSE	ACH-000657
A2780_OVARY	MT-TA--MT-TN	7	46	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0776	0.5099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A2780_OVARY	1	1	0.5875	FALSE	369	2501	205	193	0	FALSE	ACH-000657
A2780_OVARY	WTAPP1--DYNC2H1	13	11	WTAPP1	10546	chr11:102703637:+	DYNC2H1	100094	chr11:103228971:+	ONLY_REF_SPLICE	YES	1	79	0.96	0.23	0.1441	0.1219	WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1	A2780_OVARY	0.23	0.96	0.266	TRUE	0	0	0	1	0	TRUE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	11	18	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1521	0	0.02	1	0.1219	0.1995	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.02	1	0.3214	FALSE	344	827	44	306	0	FALSE	ACH-000657
A2780_OVARY	MT-TA--MT-TN	6	36	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0.399	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A2780_OVARY	1	1	0.4655	FALSE	369	2501	205	193	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	14	3	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15981	12	0	0.59	0.1552	0.0333	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	0.59	0.1885	FALSE	230	198	14	283	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	7	30	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	2214	0	0.02	1	0.0776	0.3325	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.02	1	0.4101	FALSE	344	827	44	306	0	FALSE	ACH-000657
A2780_OVARY	MT-TA--MT-TC	13	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1441	0.0665	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A2780_OVARY	1	1	0.2106	FALSE	462	80	0	856	0	FALSE	ACH-000657
A2780_OVARY	MT-TA--MT-TN	4	41	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0.4545	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A2780_OVARY	1	1	0.4988	FALSE	369	2501	205	193	0	FALSE	ACH-000657
A2780_OVARY	AP003900.6--AC008132.1	8	22	AP003900.6	2187	chr21:11172043:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.0887	0.2439	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	A2780_OVARY	0.94	1	0.3326	TRUE	0	0	0	12	0	TRUE	ACH-000657
A2780_OVARY	RP11-680G10.1--GSE1	13	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	105	1	0.12	0.1441	0.0222	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A2780_OVARY	0.12	1	0.1663	TRUE	465	1949	224	605	0	FALSE	ACH-000657
A2780_OVARY	LRRC4C--RP11-148I19.1	11	4	LRRC4C	1343	chr11:41480981:-	RP11-148I19.1	17348	chr11:42185401:-	ONLY_REF_SPLICE	YES	9	0	0.62	1	0.1219	0.0443	LRRC4C->chr11:40135753-41481323:-,leucine_rich_repeat_containing_4C,RP11-148I19.1->chr11:42014935-42185401:-	A2780_OVARY	0.62	1	0.1662	TRUE	0	0	0	1	0	TRUE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	7	20	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2869	73	0.01	0.27	0.0776	0.2217	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0.01	0.27	0.2993	FALSE	216	209	16	281	0	FALSE	ACH-000657
A2780_OVARY	MT-TA--MT-TN	12	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.133	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A2780_OVARY	1	1	0.133	FALSE	369	2501	205	193	0	FALSE	ACH-000657
A2780_OVARY	AP003900.6--AC008132.1	8	14	AP003900.6	1122	chr21:11169841:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	1	1	0.96	0.96	0.0887	0.1552	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	A2780_OVARY	0.96	0.96	0.2439	TRUE	0	0	0	25	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	8	14	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21558	73	0	0.23	0.0887	0.1552	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	0.23	0.2439	FALSE	231	217	16	283	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	3	34	MT-ND4	1023	chrM:10782:+	MT-ND4L	5550	chrM:10641:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0333	0.3769	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.95	1	0.4102	FALSE	344	821	44	306	0	FALSE	ACH-000657
A2780_OVARY	MT-ND5--MT-ND6	11	2	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	3	4901	0.81	0	0.1219	0.0222	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	A2780_OVARY	0	0.81	0.1441	FALSE	26	124	4	93	0	FALSE	ACH-000657
A2780_OVARY	NPM1P24--SET	11	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	NO	60	2397	0.17	0	0.1219	0.0111	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	A2780_OVARY	0	0.17	0.133	FALSE	0	0	0	434	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	9	7	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	24180	0	0	1	0.0998	0.0776	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	1	0.1774	FALSE	231	217	16	283	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	3	30	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	15146	0	0	1	0.0333	0.3325	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0	1	0.3658	FALSE	344	827	44	306	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	4	26	MT-ND4	1144	chrM:10903:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	48	0	0.38	1	0.0443	0.2882	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.38	1	0.3325	FALSE	344	826	44	306	0	FALSE	ACH-000657
A2780_OVARY	RPSAP52--HMGA2	10	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	1	2953	0.92	0	0.1108	0.0222	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	A2780_OVARY	0	0.92	0.133	FALSE	0	59	0	125	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	3	28	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	98	0	0.24	1	0.0333	0.3104	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.24	1	0.3437	FALSE	344	826	44	306	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	7	11	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	22167	1564	0	0.01	0.0776	0.1219	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	0.01	0.1995	FALSE	231	217	16	283	0	FALSE	ACH-000657
A2780_OVARY	SNX8--MAD1L1	8	6	SNX8	8064	chr7:2317735:-	MAD1L1	61693	chr7:1855864:-	ONLY_REF_SPLICE	YES	117	60	0.11	0.19	0.0887	0.0665	NEIGHBORS[18527],SNX8->chr7:2291405-2393953:-,sorting_nexin_8,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	A2780_OVARY	0.11	0.19	0.1552	FALSE	0	1	0	1	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	6	12	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22303	12	0	0.6	0.0665	0.133	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	0.6	0.1995	FALSE	231	217	16	283	0	FALSE	ACH-000657
A2780_OVARY	C15orf57--CBX3	6	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	71	41	0.19	0.29	0.0665	0.1219	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A2780_OVARY	0.19	0.29	0.1884	TRUE	267	562	48	632	0	FALSE	ACH-000657
A2780_OVARY	HSP90AB1--MT-RNR2	8	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	5278	0	0	1	0.0887	0.0333	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A2780_OVARY	0	1	0.122	FALSE	13	9	0	364	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	4	19	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	15715	0	0	1	0.0443	0.2106	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0	1	0.2549	FALSE	343	822	44	305	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	4	18	MT-ND4	1152	chrM:10911:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	53	0	0.29	1	0.0443	0.1995	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	0.29	1	0.2438	FALSE	344	826	44	306	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	3	21	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	19310	0	0	1	0.0333	0.2328	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	1	0.2661	FALSE	231	217	16	283	0	FALSE	ACH-000657
A2780_OVARY	MT-TA--MT-TC	6	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0.0998	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A2780_OVARY	1	1	0.1663	FALSE	462	80	0	856	0	FALSE	ACH-000657
A2780_OVARY	C15orf57--CBX3	6	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	70	41	0.16	0.24	0.0665	0.0776	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A2780_OVARY	0.16	0.24	0.1441	TRUE	267	562	48	632	0	FALSE	ACH-000657
A2780_OVARY	HMGA2--MSRB3	7	3	HMGA2	5315	chr12:66232349:+	MSRB3	36468	chr12:65847508:+	ONLY_REF_SPLICE	YES	2272	294	0	0.03	0.0776	0.0333	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3	A2780_OVARY	0	0.03	0.1109	TRUE	0	0	0	1	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	7	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19153	12	0	0.45	0.0776	0.0333	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	0.45	0.1109	FALSE	231	205	14	283	0	FALSE	ACH-000657
A2780_OVARY	MT-TA--MT-TN	5	11	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0554	0.1219	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A2780_OVARY	1	1	0.1773	FALSE	369	2501	205	193	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	3	18	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5315	73	0	0.22	0.0333	0.1995	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	0.22	0.2328	FALSE	218	210	16	281	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	6	6	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	24162	0	0	1	0.0665	0.0665	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	1	0.133	FALSE	231	217	16	283	0	FALSE	ACH-000657
A2780_OVARY	RP11-95P2.1--CORO7	6	6	RP11-95P2.1	2856	chr16:4301323:-	CORO7	26672	chr16:4412739:-	ONLY_REF_SPLICE	YES	8	31	0.6	0.28	0.0665	0.0665	RP11-95P2.1->chr16:4295826-4303790:-,CORO7->chr16:4404543-4475706:-,coronin_7	A2780_OVARY	0.28	0.6	0.133	TRUE	0	0	0	1	0	TRUE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	3	16	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17749	73	0	0.21	0.0333	0.1774	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	0.21	0.2107	FALSE	231	217	16	283	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	5	8	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	21558	2006	0	0.01	0.0554	0.0887	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	0.01	0.1441	FALSE	231	217	16	283	0	FALSE	ACH-000657
A2780_OVARY	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0776	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A2780_OVARY	1	1	0.0776	FALSE	462	80	0	856	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	4	9	MT-ND4	1503	chrM:11262:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	24653	0	0	1	0.0443	0.0998	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	1	0.1441	FALSE	231	217	16	283	0	FALSE	ACH-000657
A2780_OVARY	MT-TA--MT-TN	6	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A2780_OVARY	1	1	0.0665	FALSE	369	2501	205	193	0	FALSE	ACH-000657
A2780_OVARY	VIM--PPIA	6	0	VIM	2122	chr10:17271379:+	PPIA	12215	chr7:44836289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0	VIM->chr10:17270258-17279592:+,vimentin,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	A2780_OVARY	1	1	0.0665	TRUE	0	0	0	6	0	TRUE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	4	6	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	24162	0	0	1	0.0443	0.0665	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	1	0.1108	FALSE	231	217	16	283	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	4	6	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	24827	73	0	0.12	0.0443	0.0665	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	0.12	0.1108	FALSE	231	217	16	283	0	FALSE	ACH-000657
A2780_OVARY	RP11-95P2.1--CORO7	4	5	RP11-95P2.1	1143	chr16:4303648:-	CORO7	26672	chr16:4412739:-	ONLY_REF_SPLICE	YES	11	31	0.45	0.23	0.0443	0.0554	RP11-95P2.1->chr16:4295826-4303790:-,CORO7->chr16:4404543-4475706:-,coronin_7	A2780_OVARY	0.23	0.45	0.0997	TRUE	0	0	0	1	0	TRUE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	3	8	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	26768	752	0	0.01	0.0333	0.0887	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	0.01	0.122	FALSE	231	217	16	283	0	FALSE	ACH-000657
A2780_OVARY	MT-TA--MT-TN	5	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A2780_OVARY	1	1	0.0554	FALSE	369	2501	205	193	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	4	3	MT-ND4	1266	chrM:11025:+	MT-ATP8	5466	chrM:8453:+	INCL_NON_REF_SPLICE	YES	18489	0	0	1	0.0443	0.0333	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	1	0.0776	FALSE	231	205	14	283	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	4	3	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	23416	1564	0	0	0.0443	0.0333	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	0	0.0776	FALSE	231	205	14	283	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	3	6	MT-ND4	1453	chrM:11212:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	24553	0	0	1	0.0333	0.0665	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	1	0.0998	FALSE	231	217	16	283	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	4	2	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	NO	15936	0	0	1	0.0443	0.0222	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	1	0.0665	FALSE	230	197	14	283	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	3	5	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	21830	0	0	1	0.0333	0.0554	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	1	0.0887	FALSE	231	205	14	283	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	4	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5571	chrM:8558:+	INCL_NON_REF_SPLICE	YES	16090	700	0	0.01	0.0443	0.0111	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	0.01	0.0554	FALSE	231	204	14	283	0	FALSE	ACH-000657
A2780_OVARY	SNX8--MAD1L1	4	1	SNX8	3400	chr7:2353963:-	MAD1L1	61693	chr7:1855864:-	ONLY_REF_SPLICE	YES	18	60	0.22	0.08	0.0443	0.0111	NEIGHBORS[18527],SNX8->chr7:2291405-2393953:-,sorting_nexin_8,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	A2780_OVARY	0.08	0.22	0.0554	FALSE	0	0	0	6	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ND4L	4	0	MT-ND4	1007	chrM:10766:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A2780_OVARY	1	1	0.0443	FALSE	344	821	44	306	0	FALSE	ACH-000657
A2780_OVARY	MT-ND5--MT-ND6	3	4	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.88	0.0333	0.0443	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	A2780_OVARY	0.88	1	0.0776	FALSE	26	124	4	93	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	3	3	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	21409	0	0	1	0.0333	0.0333	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	1	0.0666	FALSE	231	205	14	283	0	FALSE	ACH-000657
A2780_OVARY	WTAPP1--DYNC2H1	1	11	WTAPP1	11204	chr11:102704295:+	DYNC2H1	100094	chr11:103228971:+	ONLY_REF_SPLICE	NO	0	79	1	0.13	0.0111	0.1219	WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1	A2780_OVARY	0.13	1	0.133	TRUE	0	0	0	1	0	TRUE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	15900	12	0	0.29	0.0333	0.0222	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	0.29	0.0555	FALSE	230	193	14	283	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16037	73	0	0.06	0.0333	0.0222	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	0.06	0.0555	FALSE	230	198	14	283	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	17406	2012	0	0	0.0333	0.0222	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	0	0.0555	FALSE	231	204	14	283	0	FALSE	ACH-000657
A2780_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	18769	1902	0	0	0.0333	0.0222	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A2780_OVARY	0	0	0.0555	FALSE	231	205	14	283	0	FALSE	ACH-000657
A2780_OVARY	MT-ND5--MT-ND6	3	2	MT-ND5	2761	chrM:14097:+	MT-ND6	6169	chrM:14317:-	INCL_NON_REF_SPLICE	YES	1	5017	0.83	0	0.0333	0.0222	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	A2780_OVARY	0	0.83	0.0555	FALSE	26	124	4	93	0	FALSE	ACH-000657
A2780_OVARY	RP11-408A13.2--NFIB	3	2	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	51	1	0.09	0.0333	0.0222	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	A2780_OVARY	0.09	1	0.0555	TRUE	0	14	0	20	14	FALSE	ACH-000657
A2780_OVARY	NPM1P24--SET	3	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	60	1990	0.06	0	0.0333	0.0111	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	A2780_OVARY	0	0.06	0.0444	FALSE	0	0	0	434	0	FALSE	ACH-000657
A2780_OVARY	TIMM23--RP11-464F9.1	3	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	26959	chr10:75454562:-	ONLY_REF_SPLICE	YES	574	6	0.01	0.4	0.0333	0.0111	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	A2780_OVARY	0.01	0.4	0.0444	FALSE	1	3	0	8	0	FALSE	ACH-000657
A2780_OVARY	MDH2--RPS28	3	0	MDH2	1113	chr7:75677481:+	RPS28	14621	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	MDH2->chr7:75677369-75696826:+,malate_dehydrogenase_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	A2780_OVARY	1	1	0.0333	TRUE	0	0	0	2	0	TRUE	ACH-000657
A2780_OVARY	MT-TA--MT-TN	3	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	A2780_OVARY	1	1	0.0333	FALSE	369	2501	205	193	0	FALSE	ACH-000657
A2780_OVARY	YIPF6--BAZ1B	3	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0333	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	A2780_OVARY	1	1	0.0333	TRUE	1	23	1	24	8	FALSE	ACH-000657
A2780_OVARY	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0.0111	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A2780_OVARY	1	1	0.0333	FALSE	467	2173	244	435	0	FALSE	ACH-000657
A2780_OVARY	DLX1--HAT1	2	0	DLX1	3114	chr2:172951581:+	HAT1	15834	chr2:172821859:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	DLX1->chr2:172949468-172954405:+,distal-less_homeobox_1,HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1	A2780_OVARY	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000657
A2780_OVARY	TTLL4--TXNRD1	2	0	TTLL4	1193	chr2:219575760:+	TXNRD1	24021	chr12:104645305:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	TTLL4->chr2:219575568-219620139:+,tubulin_tyrosine_ligase_like_4,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	A2780_OVARY	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000657
A2780_OVARY	ZFAND6--AAGAB	2	0	ZFAND6	1242	chr15:80352151:+	AAGAB	30080	chr15:67501882:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	ZFAND6->chr15:80351910-80430735:+,zinc_finger_AN1-type_containing_6,AAGAB->alpha-_and_gamma-adaptin_binding_protein,chr15:67493371-67547533:-	A2780_OVARY	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000657
A2780_OVARY	TRPC4--POSTN	1	3	TRPC4	1831	chr13:38443732:-	POSTN	18443	chr13:38171419:-	ONLY_REF_SPLICE	YES	151	1332	0.03	0	0.0111	0.0333	NEIGHBORS[37792],TRPC4->chr13:38210773-38444562:-,transient_receptor_potential_cation_channel_subfamily_C_member_4,POSTN->chr13:38136720-38172981:-,periostin	A2780_OVARY	0	0.03	0.0444	FALSE	0	0	0	1	0	FALSE	ACH-000657
A2780_OVARY	DLX1--HAT1	1	2	DLX1	3114	chr2:172951581:+	HAT1	13133	chr2:172803228:+	ONLY_REF_SPLICE	YES	1498	787	0	0	0.0111	0.0222	DLX1->chr2:172949468-172954405:+,distal-less_homeobox_1,HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1	A2780_OVARY	0	0	0.0333	FALSE	0	0	0	1	0	FALSE	ACH-000657
A2780_OVARY	DLX1--HAT1	1	1	DLX1	3114	chr2:172951581:+	HAT1	14209	chr2:172809399:+	ONLY_REF_SPLICE	NO	1498	1419	0	0	0.0111	0.0111	DLX1->chr2:172949468-172954405:+,distal-less_homeobox_1,HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1	A2780_OVARY	0	0	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000657
A2780_OVARY	NACC2--SPSB2	1	1	NACC2	1097	chr9:138987035:-	SPSB2	17833	chr12:6991451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0111	0.0111	NACC2->NACC_family_member_2,chr9:138898383-138987131:-,SPSB2->chr12:6980099-6998522:-,splA/ryanodine_receptor_domain_and_SOCS_box_containing_2	A2780_OVARY	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000657
A2780_OVARY	RP11-35G9.3--NARS	1	1	RP11-35G9.3	1217	chr18:55297750:+	NARS	17885	chr18:55283207:-	ONLY_REF_SPLICE	YES	38	1562	0.05	0	0.0111	0.0111	LOCAL_INVERSION:+:-:[8089],RP11-35G9.3->chr18:55297534-55405276:+,NARS->asparaginyl-tRNA_synthetase,chr18:55267888-55289445:-	A2780_OVARY	0	0.05	0.0222	FALSE	0	0	0	3	0	FALSE	ACH-000657
A2780_OVARY	RPS11--RNF149	1	1	RPS11	2231	chr19:50000852:+	RNF149	18834	chr2:101888206:-	ONLY_REF_SPLICE	YES	4108	14	0	0.12	0.0111	0.0111	RPS11->chr19:49999622-50002946:+,ribosomal_protein_S11,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	A2780_OVARY	0	0.12	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000657
A2780_OVARY	SMARCA1--RP4-694B14.5	1	1	SMARCA1	1304	chrX:128657174:-	RP4-694B14.5	35472	chr20:25654488:+	ONLY_REF_SPLICE	YES	493	23	0	0.08	0.0111	0.0111	SMARCA1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_1,chrX:128580480-128657477:-,RP4-694B14.5->chr20:25604681-25658710:+	A2780_OVARY	0	0.08	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000657
SIMA_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	176	43	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.7379	0.4246	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SIMA_AUTONOMIC_GANGLIA	1	1	2.1625	TRUE	508	994	45	981	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	95	28	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	36	1	0.77	0.9381	0.2765	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SIMA_AUTONOMIC_GANGLIA	0.77	1	1.2146	TRUE	458	1351	185	561	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	VSNL1--AC064875.2	82	61	VSNL1	7070	chr2:17773503:+	AC064875.2	18616	chr2:13121244:-	ONLY_REF_SPLICE	YES	19	92	0.88	0.61	0.8097	0.6023	VSNL1->chr2:17720393-17838285:+,visinin_like_1,AC064875.2->chr2:13106910-13147138:-	SIMA_AUTONOMIC_GANGLIA	0.61	0.88	1.412	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	EEF1DP3--FRY	88	34	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	7	0	0.95	1	0.8689	0.3357	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	SIMA_AUTONOMIC_GANGLIA	0.95	1	1.2046	FALSE	20	24	2	21	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	92	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	222	6	0.3	0.94	0.9084	0.0296	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SIMA_AUTONOMIC_GANGLIA	0.3	0.94	0.938	TRUE	519	3926	326	965	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	VSNL1--AC064875.2	73	39	VSNL1	7070	chr2:17773503:+	AC064875.2	19698	chr2:13108159:-	ONLY_REF_SPLICE	YES	19	88	0.85	0.56	0.7208	0.3851	VSNL1->chr2:17720393-17838285:+,visinin_like_1,AC064875.2->chr2:13106910-13147138:-	SIMA_AUTONOMIC_GANGLIA	0.56	0.85	1.1059	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	73	13	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	166	1	0.34	0.7208	0.1284	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SIMA_AUTONOMIC_GANGLIA	0.34	1	0.8492	TRUE	465	1949	224	605	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	ZNF654--HMGB2	68	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6715	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SIMA_AUTONOMIC_GANGLIA	1	1	0.6715	TRUE	0	0	0	518	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	ANP32B--NCL	54	0	ANP32B	9252	chr9:100774754:+	NCL	18675	chr2:232326421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5332	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SIMA_AUTONOMIC_GANGLIA	1	1	0.5332	TRUE	0	0	0	7	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	MT-TA--MT-TC	33	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3259	0.0296	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SIMA_AUTONOMIC_GANGLIA	1	1	0.3555	FALSE	462	80	0	856	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	ANP32B--NCL	31	0	ANP32B	8161	chr9:100773632:+	NCL	19608	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3061	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SIMA_AUTONOMIC_GANGLIA	1	1	0.3061	TRUE	0	0	0	7	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	OR51S1--TP53I11	31	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3061	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SIMA_AUTONOMIC_GANGLIA	1	1	0.3061	TRUE	402	216	10	229	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	20	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1975	0.0296	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SIMA_AUTONOMIC_GANGLIA	1	1	0.2271	TRUE	477	1352	189	275	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	16	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.158	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SIMA_AUTONOMIC_GANGLIA	1	1	0.158	FALSE	13	9	0	364	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	LINC00473--PDE10A	15	2	LINC00473	1520	chr6:166401017:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	57	1	0.23	0.94	0.1481	0.0197	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	SIMA_AUTONOMIC_GANGLIA	0.23	0.94	0.1678	FALSE	6	13	0	15	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	12	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1185	0.1185	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIMA_AUTONOMIC_GANGLIA	1	1	0.237	FALSE	499	1288	110	792	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	C1orf194--UQCR10	14	3	C1orf194	3284	chr1:109650635:-	UQCR10	8361	chr22:30163372:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1382	0.0296	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.41%,GTEx_FI:{Testis=[count:16=pct:15.2],Pituitary=[count:4=pct:7.7],Lung=[count:4=pct:2.4],Brain=[count:3=pct:0.5],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Fallopian_Tube=[count:1=pct:16.7],Thyroid=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=13;pct=0.15%;dist=Testis=12,Adipose_-_Subcutaneous=1},C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	SIMA_AUTONOMIC_GANGLIA	1	1	0.1678	TRUE	26	6	0	14	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	ANP32B--NCL	14	0	ANP32B	8161	chr9:100773632:+	NCL	18728	chr2:232326368:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1382	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SIMA_AUTONOMIC_GANGLIA	1	1	0.1382	TRUE	0	0	0	7	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	13	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1284	0.0395	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIMA_AUTONOMIC_GANGLIA	1	1	0.1679	FALSE	499	1288	110	792	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	11	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1086	0.0395	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIMA_AUTONOMIC_GANGLIA	1	1	0.1481	FALSE	499	1288	110	792	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	SETMAR--ITPR1	9	11	SETMAR	1223	chr3:4345210:+	ITPR1	23342	chr3:4699808:+	ONLY_REF_SPLICE	YES	65	40	0.24	0.33	0.0889	0.1086	SETMAR->SET_domain_and_mariner_transposase_fusion_gene,chr3:4344988-4359251:+,ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1	SIMA_AUTONOMIC_GANGLIA	0.24	0.33	0.1975	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	VSNL1--AC011897.2	11	3	VSNL1	7070	chr2:17773503:+	AC011897.2	14109	chr2:14756552:+	ONLY_REF_SPLICE	YES	19	0	0.42	1	0.1086	0.0296	VSNL1->chr2:17720393-17838285:+,visinin_like_1,AC011897.2->chr2:14756552-14770316:+	SIMA_AUTONOMIC_GANGLIA	0.42	1	0.1382	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	EEF1DP3--FRY	2	36	EEF1DP3	3331	chr13:32520318:+	FRY	12212	chr13:32612567:+	ONLY_REF_SPLICE	YES	7	0	0.84	1	0.0197	0.3555	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	SIMA_AUTONOMIC_GANGLIA	0.84	1	0.3752	FALSE	1	3	0	6	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	11	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1086	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SIMA_AUTONOMIC_GANGLIA	1	1	0.1086	FALSE	13	9	0	364	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	LINC00473--PDE10A	8	4	LINC00473	9097	chr6:166324296:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	15	1	0.44	0.92	0.079	0.0395	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	SIMA_AUTONOMIC_GANGLIA	0.44	0.92	0.1185	FALSE	2	5	0	11	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	HIVEP3--RP11-31I22.3	7	6	HIVEP3	2414	chr1:42384084:-	RP11-31I22.3	32885	chr17:31896354:+	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.0691	0.0592	HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3,RP11-31I22.3->chr17:31892783-31951141:+	SIMA_AUTONOMIC_GANGLIA	0.76	1	0.1283	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	8	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.31	1	0.079	0.0197	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SIMA_AUTONOMIC_GANGLIA	0.31	1	0.0987	FALSE	125	705	46	456	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	21	MT-ND6	1153	chrM:14521:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0.2074	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIMA_AUTONOMIC_GANGLIA	1	1	0.237	FALSE	499	1288	110	792	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	EEF2--RPS28	7	2	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	3996	0	0	1	0.0691	0.0197	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SIMA_AUTONOMIC_GANGLIA	0	1	0.0888	FALSE	0	0	0	100	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	MBNL1--FXR1	6	5	MBNL1	3666	chr3:151986881:+	FXR1	36744	chr3:180665653:+	ONLY_REF_SPLICE	YES	27	335	0.29	0.03	0.0592	0.0494	MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+	SIMA_AUTONOMIC_GANGLIA	0.03	0.29	0.1086	TRUE	0	0	0	1	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	RP11-120D5.1--MID1	6	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	12	0.92	0.48	0.0592	0.0494	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SIMA_AUTONOMIC_GANGLIA	0.48	0.92	0.1086	FALSE	16	356	14	466	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	ANP32B--SEPT7	7	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0691	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	SIMA_AUTONOMIC_GANGLIA	1	1	0.0691	TRUE	1	1	0	18	1	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	6	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	39	0	0.17	1	0.0592	0.0197	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SIMA_AUTONOMIC_GANGLIA	0.17	1	0.0789	FALSE	164	806	69	479	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	6	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0592	0.0099	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SIMA_AUTONOMIC_GANGLIA	0.88	1	0.0691	FALSE	292	1546	117	613	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	HIVEP3--RP11-31I22.3	5	4	HIVEP3	2414	chr1:42384084:-	RP11-31I22.3	36446	chr17:31908175:+	ONLY_REF_SPLICE	YES	4	3	0.69	0.75	0.0494	0.0395	HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3,RP11-31I22.3->chr17:31892783-31951141:+	SIMA_AUTONOMIC_GANGLIA	0.69	0.75	0.0889	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	SETMAR--ITPR1	3	11	SETMAR	1565	chr3:4345552:+	ITPR1	23342	chr3:4699808:+	ONLY_REF_SPLICE	YES	75	40	0.16	0.26	0.0296	0.1086	SETMAR->SET_domain_and_mariner_transposase_fusion_gene,chr3:4344988-4359251:+,ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1	SIMA_AUTONOMIC_GANGLIA	0.16	0.26	0.1382	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	MT-TA--MT-TC	5	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0494	0.0197	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SIMA_AUTONOMIC_GANGLIA	1	1	0.0691	FALSE	462	80	0	856	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	ZBED3-AS1--PDE8B	5	1	ZBED3-AS1	10441	chr5:76414346:+	PDE8B	28042	chr5:76607819:+	ONLY_REF_SPLICE	YES	7	1	0.46	0.86	0.0494	0.0099	NEIGHBORS[43540],ZBED3-AS1->ZBED3_antisense_RNA_1,chr5:76382565-76462734:+,PDE8B->chr5:76506274-76725632:+,phosphodiesterase_8B	SIMA_AUTONOMIC_GANGLIA	0.46	0.86	0.0593	FALSE	4	0	0	2	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	LINC01036--LINC01037	5	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0494	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SIMA_AUTONOMIC_GANGLIA	1	1	0.0494	FALSE	0	24	0	62	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	MT-TA--MT-TC	4	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0.0296	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SIMA_AUTONOMIC_GANGLIA	1	1	0.0691	FALSE	462	80	0	856	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	DLK1--CPSF6	4	1	DLK1	6692	chr14:101200765:+	CPSF6	21513	chr12:69663292:+	ONLY_REF_SPLICE	YES	5291	134	0	0.04	0.0395	0.0099	DLK1->chr14:101192042-101201539:+,delta-like_1_homolog_(Drosophila),CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6	SIMA_AUTONOMIC_GANGLIA	0	0.04	0.0494	FALSE	0	1	0	2	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	EEF1DP3--FRY	2	9	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	30	0	0.27	1	0.0197	0.0889	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	SIMA_AUTONOMIC_GANGLIA	0.27	1	0.1086	FALSE	18	26	2	21	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	CASC9--RP11-300E4.2	4	0	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	SIMA_AUTONOMIC_GANGLIA	1	1	0.0395	TRUE	0	23	0	19	23	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	LINC01036--LINC01037	4	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0395	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SIMA_AUTONOMIC_GANGLIA	1	1	0.0395	FALSE	0	26	0	50	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	NDUFA4--PHF14	4	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0395	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SIMA_AUTONOMIC_GANGLIA	1	1	0.0395	TRUE	19	32	3	60	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	STX18-AS1--MSX1	3	2	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	5	1	0.5	0.83	0.0296	0.0197	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	SIMA_AUTONOMIC_GANGLIA	0.5	0.83	0.0493	TRUE	37	101	7	40	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	3	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0.0099	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SIMA_AUTONOMIC_GANGLIA	1	1	0.0395	TRUE	274	363	69	150	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	VTI1A--RP11-57H14.3	3	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	21	0	0.16	1	0.0296	0.0099	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SIMA_AUTONOMIC_GANGLIA	0.16	1	0.0395	FALSE	272	151	14	158	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	ANP32B--NCL	3	0	ANP32B	8117	chr9:100773588:+	NCL	18663	chr2:232326433:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SIMA_AUTONOMIC_GANGLIA	1	1	0.0296	TRUE	0	0	0	7	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	C6orf48--H19	3	0	C6orf48	1541	chr6:31802925:+	H19	9512	chr11:2018897:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	C6orf48->chr6:31802385-31807541:+,chromosome_6_open_reading_frame_48,H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-	SIMA_AUTONOMIC_GANGLIA	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	EIF1--RPL5	3	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	SIMA_AUTONOMIC_GANGLIA	1	1	0.0296	TRUE	0	0	0	39	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	FOXA2--MT-CO3	3	0	FOXA2	4374	chr20:22562683:-	MT-CO3	8629	chrM:9421:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	FOXA2->chr20:22561643-22566093:-,forkhead_box_A2,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SIMA_AUTONOMIC_GANGLIA	1	1	0.0296	FALSE	0	0	0	3	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	HIVEP3--RP11-31I22.3	3	0	HIVEP3	1119	chr1:42501478:-	RP11-31I22.3	32885	chr17:31896354:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3,RP11-31I22.3->chr17:31892783-31951141:+	SIMA_AUTONOMIC_GANGLIA	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIMA_AUTONOMIC_GANGLIA	1	1	0.0296	FALSE	499	1288	110	792	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SIMA_AUTONOMIC_GANGLIA	1	1	0.0296	FALSE	462	80	0	856	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SIMA_AUTONOMIC_GANGLIA	1	1	0.0296	TRUE	0	0	0	434	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SIMA_AUTONOMIC_GANGLIA	1	1	0.0296	TRUE	0	0	0	434	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	2	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	40	0	0.09	1	0.0197	0.0197	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SIMA_AUTONOMIC_GANGLIA	0.09	1	0.0394	FALSE	56	216	12	147	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	RNF152--RP11-879F14.1	2	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	YES	24	0	0.11	1	0.0197	0.0099	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	SIMA_AUTONOMIC_GANGLIA	0.11	1	0.0296	FALSE	119	124	24	18	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	YWHAE--CRK	2	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1407	67	0	0.04	0.0197	0.0099	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SIMA_AUTONOMIC_GANGLIA	0	0.04	0.0296	FALSE	6	50	7	115	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	CPSF6--CHMP1A	2	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SIMA_AUTONOMIC_GANGLIA	1	1	0.0197	TRUE	95	74	6	34	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	DIDO1--HNRNPM	2	0	DIDO1	1157	chr20:61569148:-	HNRNPM	30397	chr19:8520289:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M	SIMA_AUTONOMIC_GANGLIA	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	GEN1--ODC1	2	0	GEN1	1488	chr2:17935612:+	ODC1	26869	chr2:10582300:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	GEN1->GEN1,_Holliday_junction_5'_flap_endonuclease,Oncogene{Bushman},chr2:17935125-17966632:+,ODC1->chr2:10580094-10588630:-,ornithine_decarboxylase_1	SIMA_AUTONOMIC_GANGLIA	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	HNRNPH1--FUS	2	0	HNRNPH1	4526	chr5:179050038:-	FUS	23431	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},HGNC_GENEFAM,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	SIMA_AUTONOMIC_GANGLIA	1	1	0.0197	TRUE	1	1	0	2	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	LUZP1--RNF19B	2	0	LUZP1	2577	chr1:23495259:-	RNF19B	21042	chr1:33415375:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1,RNF19B->chr1:33402046-33430286:-,ring_finger_protein_19B	SIMA_AUTONOMIC_GANGLIA	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	2	0	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SIMA_AUTONOMIC_GANGLIA	1	1	0.0197	FALSE	8	57	1	47	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	RP11-412P11.1--C1QTNF7	2	0	RP11-412P11.1	3285	chr4:23004866:+	C1QTNF7	16923	chr4:15437360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	RP11-412P11.1->chr4:22999174-23058485:+,C1QTNF7->C1q_and_tumor_necrosis_factor_related_protein_7,chr4:15341442-15447790:+	SIMA_AUTONOMIC_GANGLIA	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	SIN3A--HNRNPK	2	0	SIN3A	3271	chr15:75743764:-	HNRNPK	42027	chr9:86593367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	SIN3A->SIN3_transcription_regulator_family_member_A,chr15:75661720-75748183:-,HNRNPK->Oncogene{Bushman},chr9:86582998-86595569:-,heterogeneous_nuclear_ribonucleoprotein_K	SIMA_AUTONOMIC_GANGLIA	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	TRAPPC9--KCNK9	2	0	TRAPPC9	55504	chr8:140898123:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	SIMA_AUTONOMIC_GANGLIA	1	1	0.0197	FALSE	7	13	2	16	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	ZNF599--GRIK2	2	0	ZNF599	4117	chr19:35258221:-	GRIK2	17520	chr6:102069824:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	ZNF599->chr19:35248981-35264134:-,zinc_finger_protein_599,GRIK2->chr6:101846664-102517958:+,glutamate_ionotropic_receptor_kainate_type_subunit_2	SIMA_AUTONOMIC_GANGLIA	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	FGF14-IT1--FGF14	1	2	FGF14-IT1	3717	chr13:103018795:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	14	1	0.18	0.0099	0.0197	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	SIMA_AUTONOMIC_GANGLIA	0.18	1	0.0296	TRUE	80	58	2	10	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	LDLRAD3--PRR5L	1	2	LDLRAD3	5673	chr11:36120011:+	PRR5L	30278	chr11:36415396:+	ONLY_REF_SPLICE	YES	37	0	0.07	1	0.0099	0.0197	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	SIMA_AUTONOMIC_GANGLIA	0.07	1	0.0296	FALSE	12	80	1	10	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0099	0.0197	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SIMA_AUTONOMIC_GANGLIA	1	1	0.0296	TRUE	62	24	1	171	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	BRWD1--CHMP1A	1	1	BRWD1	4942	chr21:40670358:-	CHMP1A	61543	chr16:89713739:-	ONLY_REF_SPLICE	YES	70	173	0.03	0.01	0.0099	0.0099	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Heart_-_Left_Ventricle=1},BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SIMA_AUTONOMIC_GANGLIA	0.01	0.03	0.0198	FALSE	1	6	1	2	2	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	RNF152--RP11-879F14.1	1	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	24	0	0.08	1	0.0099	0.0099	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	SIMA_AUTONOMIC_GANGLIA	0.08	1	0.0198	FALSE	275	472	65	43	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	RP11-155G15.2--RP11-1E3.1	1	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0099	0.0099	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	SIMA_AUTONOMIC_GANGLIA	1	1	0.0198	FALSE	46	201	11	112	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0099	0.0099	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SIMA_AUTONOMIC_GANGLIA	0.4	1	0.0198	TRUE	16	11	2	20	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	RP11-758M4.1--PI15	1	1	RP11-758M4.1	2222	chr8:75525175:+	PI15	17893	chr8:75756216:+	ONLY_REF_SPLICE	YES	6	9	0.25	0.18	0.0099	0.0099	NEIGHBORS[1224],RP11-758M4.1->chr8:75512010-75735548:+,PI15->chr8:75736772-75767264:+,peptidase_inhibitor_15	SIMA_AUTONOMIC_GANGLIA	0.18	0.25	0.0198	FALSE	0	0	0	4	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	STX18-AS1--MSX1	1	1	STX18-AS1	2665	chr4:4546634:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	12	1	0.14	0.67	0.0099	0.0099	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	SIMA_AUTONOMIC_GANGLIA	0.14	0.67	0.0198	TRUE	3	17	0	6	0	FALSE	ACH-000099
SIMA_AUTONOMIC_GANGLIA	ZBED3-AS1--PDE8B	1	1	ZBED3-AS1	1165	chr5:76382729:+	PDE8B	28042	chr5:76607819:+	ONLY_REF_SPLICE	NO	5	1	0.29	0.67	0.0099	0.0099	NEIGHBORS[43540],ZBED3-AS1->ZBED3_antisense_RNA_1,chr5:76382565-76462734:+,PDE8B->chr5:76506274-76725632:+,phosphodiesterase_8B	SIMA_AUTONOMIC_GANGLIA	0.29	0.67	0.0198	FALSE	0	1	0	1	0	FALSE	ACH-000099
JMSU1_URINARY_TRACT	AP003900.6--AC011718.2	118	6	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	1.4092	0.0717	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	JMSU1_URINARY_TRACT	0.99	1	1.4809	TRUE	0	3	0	38	3	FALSE	ACH-000753
JMSU1_URINARY_TRACT	TIMM23B--LINC00843	100	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1942	0.2269	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JMSU1_URINARY_TRACT	1	1	1.4211	TRUE	508	994	45	981	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	MGST3--LRCH3	96	4	MGST3	1433	chr1:165600530:+	LRCH3	25817	chr3:197553749:+	ONLY_REF_SPLICE	YES	7	31	0.93	0.76	1.1464	0.0478	MGST3->chr1:165600098-165631033:+,microsomal_glutathione_S-transferase_3,LRCH3->chr3:197518097-197615307:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_3	JMSU1_URINARY_TRACT	0.76	0.93	1.1942	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	ZNF654--HMGB2	86	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.027	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JMSU1_URINARY_TRACT	1	1	1.027	TRUE	0	0	0	518	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	POLR3E--NPIPB5	64	26	POLR3E	10850	chr16:22326529:+	NPIPB5	54384	chr16:22544947:+	ONLY_REF_SPLICE	YES	25	56	0.78	0.62	0.7643	0.3105	POLR3E->chr16:22308730-22346424:+,polymerase_(RNA)_III_subunit_E,NPIPB5->chr16:22490442-22547842:+,nuclear_pore_complex_interacting_protein_family_member_B5	JMSU1_URINARY_TRACT	0.62	0.78	1.0748	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	KLC1--APOPT1	55	31	KLC1	13467	chr14:104145882:+	APOPT1	31803	chr14:104053611:+	ONLY_REF_SPLICE	YES	288	80	0.23	0.52	0.6568	0.3702	PROTCLUST,NEIGHBORS_OVERLAP:+:+:[44561],KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+	JMSU1_URINARY_TRACT	0.23	0.52	1.027	FALSE	0	0	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RAP1GDS1--C4orf33	56	24	RAP1GDS1	2297	chr4:99214666:+	C4orf33	30330	chr4:130023757:+	ONLY_REF_SPLICE	YES	104	9	0.43	0.9	0.6687	0.2866	RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+,C4orf33->chr4:130014472-130037795:+,chromosome_4_open_reading_frame_33	JMSU1_URINARY_TRACT	0.43	0.9	0.9553	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	TIMM23--RP11-464F9.1	51	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	377	3	0.13	0.95	0.609	0.0358	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JMSU1_URINARY_TRACT	0.13	0.95	0.6448	TRUE	519	3926	326	965	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	KLC1--APOPT1	38	42	KLC1	17155	chr14:104153548:+	APOPT1	31803	chr14:104053611:+	ONLY_REF_SPLICE	YES	137	80	0.37	0.5	0.4538	0.5016	PROTCLUST,NEIGHBORS_OVERLAP:+:+:[44561],KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+	JMSU1_URINARY_TRACT	0.37	0.5	0.9554	FALSE	0	0	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	KLC1--APOPT1	24	42	KLC1	18222	chr14:104158762:+	APOPT1	31803	chr14:104053611:+	ONLY_REF_SPLICE	YES	153	80	0.3	0.45	0.2866	0.5016	PROTCLUST,NEIGHBORS_OVERLAP:+:+:[44561],KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+	JMSU1_URINARY_TRACT	0.3	0.45	0.7882	FALSE	0	0	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	ATP6V1H--RP11-431M3.2	31	13	ATP6V1H	14490	chr8:54708207:-	RP11-431M3.2	26092	chr8:34087018:-	ONLY_REF_SPLICE	YES	77	0	0.36	1	0.3702	0.1552	ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-,RP11-431M3.2->chr8:34086812-34106464:-	JMSU1_URINARY_TRACT	0.36	1	0.5254	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	SPG11--MRPL52	24	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2866	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	JMSU1_URINARY_TRACT	1	1	0.2866	TRUE	38	11	0	19	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	KLC1--APOPT1	9	46	KLC1	19304	chr14:104159971:+	APOPT1	31803	chr14:104053611:+	ONLY_REF_SPLICE	YES	171	80	0.24	0.41	0.1075	0.5493	PROTCLUST,NEIGHBORS_OVERLAP:+:+:[44561],KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+	JMSU1_URINARY_TRACT	0.24	0.41	0.6568	FALSE	0	0	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	MT-ND6--MT-TE	20	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2388	0.0239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JMSU1_URINARY_TRACT	1	1	0.2627	FALSE	499	1288	110	792	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	AP003900.6--AC011718.2	16	12	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	3	0	0.9	1	0.1911	0.1433	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	JMSU1_URINARY_TRACT	0.9	1	0.3344	TRUE	0	5	0	45	5	FALSE	ACH-000753
JMSU1_URINARY_TRACT	NPM1P24--SET	17	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.203	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JMSU1_URINARY_TRACT	1	1	0.203	TRUE	0	0	0	434	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	AGO2--TRAPPC9	16	1	AGO2	1135	chr8:141645584:-	TRAPPC9	53615	chr8:141034176:-	ONLY_REF_SPLICE	YES	0	3	1	0.85	0.1911	0.0119	NEIGHBORS[72586],AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	JMSU1_URINARY_TRACT	0.85	1	0.203	FALSE	0	2	0	3	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	UHRF2--KDM4C	14	7	UHRF2	13197	chr9:6486925:+	KDM4C	37849	chr9:6880012:+	ONLY_REF_SPLICE	YES	95	17	0.18	0.55	0.1672	0.0836	UHRF2->Oncogene{Bushman},chr9:6413151-6507054:+,ubiquitin_like_with_PHD_and_ring_finger_domains_2,KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C	JMSU1_URINARY_TRACT	0.18	0.55	0.2508	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	MGST3--LRCH3	14	6	MGST3	3510	chr1:165605059:+	LRCH3	25817	chr3:197553749:+	ONLY_REF_SPLICE	YES	15	31	0.57	0.39	0.1672	0.0717	MGST3->chr1:165600098-165631033:+,microsomal_glutathione_S-transferase_3,LRCH3->chr3:197518097-197615307:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_3	JMSU1_URINARY_TRACT	0.39	0.57	0.2389	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	KLC1--APOPT1	9	25	KLC1	13440	chr14:104145855:+	APOPT1	31803	chr14:104053611:+	ONLY_REF_SPLICE	YES	262	80	0.11	0.3	0.1075	0.2985	PROTCLUST,NEIGHBORS_OVERLAP:+:+:[44561],KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+	JMSU1_URINARY_TRACT	0.11	0.3	0.406	FALSE	0	0	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	MT-TA--MT-TC	14	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1672	0.0119	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JMSU1_URINARY_TRACT	1	1	0.1791	FALSE	462	80	0	856	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RP11-123O10.4--GRIP1	11	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1314	0.0358	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JMSU1_URINARY_TRACT	1	1	0.1672	FALSE	416	2512	207	587	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RANBP9--ERVFRD-1	9	4	RANBP9	2742	chr6:13697017:-	ERVFRD-1	24449	chr6:11103995:-	INCL_NON_REF_SPLICE	YES	216	8	0.06	0.62	0.1075	0.0478	RANBP9->RAN_binding_protein_9,chr6:13621730-13711796:-,ERVFRD-1->chr6:11102722-11111965:-,endogenous_retrovirus_group_FRD_member_1	JMSU1_URINARY_TRACT	0.06	0.62	0.1553	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	ZNF654--HMGB2	10	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1194	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JMSU1_URINARY_TRACT	1	1	0.1194	TRUE	0	0	0	518	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RP11-640M9.1--SEC22B	9	3	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	YES	23	257	0.34	0.04	0.1075	0.0358	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	JMSU1_URINARY_TRACT	0.04	0.34	0.1433	TRUE	20	16	6	14	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	KLC1--APOPT1	1	32	KLC1	14980	chr14:104151373:+	APOPT1	31803	chr14:104053611:+	ONLY_REF_SPLICE	YES	306	80	0.1	0.29	0.0119	0.3821	PROTCLUST,NEIGHBORS_OVERLAP:+:+:[44561],KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+	JMSU1_URINARY_TRACT	0.1	0.29	0.394	FALSE	0	0	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	SBF2--RP11-540A21.2	8	3	SBF2	7854	chr11:10049999:-	RP11-540A21.2	64094	chr11:9779390:-	ONLY_REF_SPLICE	YES	42	0	0.21	1	0.0955	0.0358	NEIGHBORS[19134],SBF2->SET_binding_factor_2,chr11:9800214-10315754:-,RP11-540A21.2->chr11:9776317-9781080:-	JMSU1_URINARY_TRACT	0.21	1	0.1313	FALSE	0	0	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	KLC1--APOPT1	2	25	KLC1	18222	chr14:104158762:+	APOPT1	33813	chr14:104056518:+	ONLY_REF_SPLICE	YES	153	71	0.15	0.28	0.0239	0.2985	PROTCLUST,NEIGHBORS_OVERLAP:+:+:[44561],KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+	JMSU1_URINARY_TRACT	0.15	0.28	0.3224	FALSE	0	0	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	PAWR--RP1-78O14.1	8	1	PAWR	2369	chr12:80083509:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	40	0	0.18	1	0.0955	0.0119	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	JMSU1_URINARY_TRACT	0.18	1	0.1074	FALSE	0	7	0	7	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	AP003900.6--AC011718.2	6	7	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.0717	0.0836	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	JMSU1_URINARY_TRACT	0.87	1	0.1553	TRUE	0	0	0	21	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	MT-TA--MT-TC	7	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0836	0.0119	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JMSU1_URINARY_TRACT	1	1	0.0955	FALSE	462	80	0	856	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	LAS1L--NCL	7	0	LAS1L	13911	chrX:64737973:-	NCL	25282	chr2:232325470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0836	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	JMSU1_URINARY_TRACT	1	1	0.0836	TRUE	0	0	0	3	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	AP003900.6--AC011718.2	6	3	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0717	0.0358	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	JMSU1_URINARY_TRACT	0.9	1	0.1075	TRUE	0	1	0	26	1	FALSE	ACH-000753
JMSU1_URINARY_TRACT	MT-ND6--MT-TE	6	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0717	0.0239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JMSU1_URINARY_TRACT	1	1	0.0956	FALSE	499	1288	110	792	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	APP--MT-CO3	6	1	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	1821	6233	0	0	0.0717	0.0119	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	JMSU1_URINARY_TRACT	0	0	0.0836	FALSE	0	0	0	26	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	LAS1L--NCL	6	1	LAS1L	13899	chrX:64737985:-	NCL	24336	chr2:232326416:-	INCL_NON_REF_SPLICE	YES	68	2585	0.09	0	0.0717	0.0119	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	JMSU1_URINARY_TRACT	0	0.09	0.0836	FALSE	0	0	0	3	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	C15orf57--CBX3	4	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	43	17	0.22	0.41	0.0478	0.0955	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JMSU1_URINARY_TRACT	0.22	0.41	0.1433	TRUE	267	562	48	632	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	KLC1--APOPT1	1	20	KLC1	13467	chr14:104145882:+	APOPT1	33813	chr14:104056518:+	ONLY_REF_SPLICE	NO	288	71	0.07	0.23	0.0119	0.2388	PROTCLUST,NEIGHBORS_OVERLAP:+:+:[44561],KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1,APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+	JMSU1_URINARY_TRACT	0.07	0.23	0.2507	FALSE	0	0	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	MT-CO3--MT-ATP6	5	4	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0597	0.0478	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JMSU1_URINARY_TRACT	1	1	0.1075	FALSE	189	492	56	216	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0717	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JMSU1_URINARY_TRACT	1	1	0.0717	TRUE	465	1949	224	605	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	MT-ND6--MT-TE	5	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0597	0.0358	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JMSU1_URINARY_TRACT	1	1	0.0955	FALSE	499	1288	110	792	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	PRR16--CTD-2334D19.1	5	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	41	0	0.15	1	0.0597	0.0239	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	JMSU1_URINARY_TRACT	0.15	1	0.0836	FALSE	56	216	12	147	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	MT-CO3--MT-ATP6	4	5	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0478	0.0597	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JMSU1_URINARY_TRACT	1	1	0.1075	FALSE	189	492	56	216	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	MT-CO3--MT-ATP6	5	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0597	0.0119	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JMSU1_URINARY_TRACT	1	1	0.0716	FALSE	189	492	56	216	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	MT-CO3--MT-ATP6	5	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0597	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JMSU1_URINARY_TRACT	1	1	0.0597	FALSE	189	492	56	216	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0597	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JMSU1_URINARY_TRACT	1	1	0.0597	FALSE	462	80	0	856	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RCC1--ITGB3BP	5	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0597	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	JMSU1_URINARY_TRACT	1	1	0.0597	TRUE	0	6	0	9	2	TRUE	ACH-000753
JMSU1_URINARY_TRACT	MT-ND6--MT-TE	3	6	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0.0717	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JMSU1_URINARY_TRACT	1	1	0.1075	FALSE	499	1288	110	792	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	C15orf57--CBX3	3	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	41	17	0.16	0.32	0.0358	0.0597	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JMSU1_URINARY_TRACT	0.16	0.32	0.0955	TRUE	267	562	48	632	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.0478	0.0119	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JMSU1_URINARY_TRACT	0.71	1	0.0597	TRUE	458	1351	185	561	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	HDGF--MT-ATP8	4	0	HDGF	9880	chr1:156713024:-	MT-ATP8	14064	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0478	0	HDGF->chr1:156711899-156736717:-,hepatoma-derived_growth_factor,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JMSU1_URINARY_TRACT	1	1	0.0478	FALSE	0	0	0	3	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0478	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JMSU1_URINARY_TRACT	1	1	0.0478	TRUE	0	0	0	434	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	PAWR--RP1-78O14.1	4	0	PAWR	2369	chr12:80083509:-	RP1-78O14.1	32112	chr12:79735189:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0478	0	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	JMSU1_URINARY_TRACT	1	1	0.0478	FALSE	0	2	0	3	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RP11-495P10.2--RP11-403I13.4	4	0	RP11-495P10.2	1210	chr1:147931724:-	RP11-403I13.4	10510	chr1:149239868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0478	0	GTEx_FI:{Brain=[count:4=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Breast=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Fallopian_Tube=[count:1=pct:16.7]},RP11-495P10.2->chr1:147835127-147931933:-,RP11-403I13.4->chr1:149239531-149265510:+	JMSU1_URINARY_TRACT	1	1	0.0478	TRUE	8	0	0	5	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	SLCO4A1--ADRM1	4	0	SLCO4A1	1109	chr20:61273905:+	ADRM1	21543	chr20:60881253:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0478	0	GTEx_v2:{count=1;pct=0.01%;dist=Kidney_-_Cortex=1},{Klijn_CCL:Colo-Rectal=1},SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,ADRM1->adhesion_regulating_molecule_1,chr20:60877149-60883918:+	JMSU1_URINARY_TRACT	1	1	0.0478	TRUE	0	0	0	2	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	AP003900.6--AC011718.2	3	3	AP003900.6	1122	chr21:11169841:+	AC011718.2	11864	chr22:20653813:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0358	0.0358	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	JMSU1_URINARY_TRACT	0.86	1	0.0716	TRUE	0	3	0	38	3	FALSE	ACH-000753
JMSU1_URINARY_TRACT	PRR16--CTD-2334D19.1	3	2	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	17	0	0.23	1	0.0358	0.0239	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	JMSU1_URINARY_TRACT	0.23	1	0.0597	FALSE	21	45	1	60	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RANBP9--SMIM13	3	2	RANBP9	2742	chr6:13697017:-	SMIM13	22838	chr6:11134636:+	ONLY_REF_SPLICE	YES	216	42	0.02	0.11	0.0358	0.0239	RANBP9->RAN_binding_protein_9,chr6:13621730-13711796:-,SMIM13->chr6:11094266-11138964:+,small_integral_membrane_protein_13	JMSU1_URINARY_TRACT	0.02	0.11	0.0597	TRUE	0	0	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RP11-476K15.1--CTD-2015H3.2	3	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	4	0	0.5	1	0.0358	0.0119	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	JMSU1_URINARY_TRACT	0.5	1	0.0477	FALSE	0	46	0	73	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RP11-476K15.1--CTD-2015H3.2	3	1	RP11-476K15.1	3243	chr18:1626368:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0358	0.0119	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	JMSU1_URINARY_TRACT	0.8	1	0.0477	FALSE	0	1	0	4	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	TIMM23B--LINC00843	3	1	TIMM23B	1257	chr10:51371646:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	394	0	0.01	1	0.0358	0.0119	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JMSU1_URINARY_TRACT	0.01	1	0.0477	FALSE	0	0	0	10	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	LAS1L--NCL	3	0	LAS1L	13887	chrX:64737997:-	NCL	25264	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	JMSU1_URINARY_TRACT	1	1	0.0358	TRUE	0	0	0	3	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JMSU1_URINARY_TRACT	1	1	0.0358	FALSE	499	1288	110	792	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JMSU1_URINARY_TRACT	1	1	0.0358	FALSE	292	1546	117	613	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RP11-640M9.1--SEC22B	2	4	RP11-640M9.1	3158	chr1:144519813:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	YES	28	257	0.18	0.02	0.0239	0.0478	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	JMSU1_URINARY_TRACT	0.02	0.18	0.0717	TRUE	20	16	6	14	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	SBNO2--CNN2	3	0	SBNO2	1112	chr19:1174171:-	CNN2	32718	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Blood=[count:3=pct:1.7],Whole_Blood=[count:3=pct:2.3],Spleen=[count:1=pct:0.9],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=5,Lung=2,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1},LOCAL_INVERSION:-:+:[68568],SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),CNN2->calponin_2,chr19:1026298-1039068:+	JMSU1_URINARY_TRACT	1	1	0.0358	TRUE	4	1	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	SF1--MT2A	3	0	SF1	3289	chr11:64543970:-	MT2A	17020	chr16:56642904:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,MT2A->chr16:56642111-56643409:+,metallothionein_2A	JMSU1_URINARY_TRACT	1	1	0.0358	TRUE	1	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	XXbac-BPG252P9.9--LMNA	3	0	XXbac-BPG252P9.9	1110	chr6:30691545:-	LMNA	21250	chr1:156106903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	XXbac-BPG252P9.9->chr6:30690882-30691654:-,LMNA->chr1:156052364-156109880:+,lamin_A/C	JMSU1_URINARY_TRACT	1	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	AP003900.6--AC011718.2	2	3	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	1	6	0.83	0.45	0.0239	0.0358	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	JMSU1_URINARY_TRACT	0.45	0.83	0.0597	TRUE	0	1	0	21	1	FALSE	ACH-000753
JMSU1_URINARY_TRACT	AP003900.6--AC011718.2	1	6	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0119	0.0717	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	JMSU1_URINARY_TRACT	0.7	1	0.0836	TRUE	0	1	0	20	1	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RP11-640M9.1--SEC22B	2	2	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	28025	chr1:145112373:+	ONLY_REF_SPLICE	YES	23	220	0.15	0.02	0.0239	0.0239	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	JMSU1_URINARY_TRACT	0.02	0.15	0.0478	TRUE	0	0	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	AGO2--TRAPPC9	2	1	AGO2	3586	chr8:141615896:-	TRAPPC9	53615	chr8:141034176:-	ONLY_REF_SPLICE	YES	1	3	0.75	0.5	0.0239	0.0119	NEIGHBORS[72586],AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	JMSU1_URINARY_TRACT	0.5	0.75	0.0358	FALSE	0	0	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	CDH13--RP11-22H5.2	2	1	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	120	0	0.02	1	0.0239	0.0119	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	JMSU1_URINARY_TRACT	0.02	1	0.0358	FALSE	14	31	0	36	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RANBP9--ERVFRD-1	1	5	RANBP9	2742	chr6:13697017:-	ERVFRD-1	22581	chr6:11105863:-	ONLY_REF_SPLICE	YES	216	0	0.03	1	0.0119	0.0597	RANBP9->RAN_binding_protein_9,chr6:13621730-13711796:-,ERVFRD-1->chr6:11102722-11111965:-,endogenous_retrovirus_group_FRD_member_1	JMSU1_URINARY_TRACT	0.03	1	0.0716	TRUE	0	0	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RP11-476K15.1--CTD-2015H3.2	2	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0239	0.0119	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	JMSU1_URINARY_TRACT	0.43	1	0.0358	FALSE	0	46	0	73	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	ATP6V1C1--AZIN1	2	0	ATP6V1C1	1163	chr8:104033453:+	AZIN1	29641	chr8:103855975:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx&tcga_normals:1/3694=0.03%,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+,AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	0	0	2	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	CD44--PDHX	2	0	CD44	1501	chr11:35160917:+	PDHX	42230	chr11:35013862:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	0	0	3	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	EMC3--UNG	2	0	EMC3	2708	chr3:10028191:-	UNG	23429	chr12:109547634:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	EMC3->ER_membrane_protein_complex_subunit_3,chr3:10004221-10052800:-,UNG->chr12:109535379-109548797:+,uracil_DNA_glycosylase	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	ITPK1--MAD1L1	2	0	ITPK1	10373	chr14:93428700:-	MAD1L1	61358	chr7:1855864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	RCC1--HENMT1	2	0	RCC1	2175	chr1:28834672:+	HENMT1	20442	chr1:109202584:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HENMT1->HEN1_methyltransferase_homolog_1,chr1:109190912-109204148:-	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	1	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	RP11-495P10.2--RP11-403I13.4	2	0	RP11-495P10.2	2172	chr1:147930762:-	RP11-403I13.4	12850	chr1:149245050:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_FI:{Brain=[count:4=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Breast=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Fallopian_Tube=[count:1=pct:16.7]},RP11-495P10.2->chr1:147835127-147931933:-,RP11-403I13.4->chr1:149239531-149265510:+	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	6	0	0	2	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	SFMBT1--UBE2K	2	0	SFMBT1	1935	chr3:53079832:-	UBE2K	36241	chr4:39776454:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	SFMBT1->Scm-like_with_four_mbt_domains_1,chr3:52937588-53080766:-,UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	TCF12--POLR3G	2	0	TCF12	1284	chr15:57211104:+	POLR3G	49766	chr5:89791494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,POLR3G->chr5:89767565-89810370:+,polymerase_(RNA)_III_subunit_G	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	TFRC--FAM208A	2	0	TFRC	10623	chr3:195792314:-	FAM208A	29248	chr3:56707753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor,FAM208A->chr3:56654161-56717265:-,family_with_sequence_similarity_208_member_A	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	5	8	0	33	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	ZNF672--NPAT	2	0	ZNF672	5480	chr1:249139861:+	NPAT	23126	chr11:108047817:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	ZNF672->chr1:249132409-249143716:+,zinc_finger_protein_672,NPAT->chr11:108027942-108093369:-,nuclear_protein,_co-activator_of_histone_transcription	JMSU1_URINARY_TRACT	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	AP003900.6--AC011718.2	1	3	AP003900.6	2187	chr21:11172043:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	NO	2	6	0.67	0.4	0.0119	0.0358	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	JMSU1_URINARY_TRACT	0.4	0.67	0.0477	TRUE	0	0	0	4	0	TRUE	ACH-000753
JMSU1_URINARY_TRACT	RP11-640M9.1--SEC22B	1	3	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	25754	chr1:145103908:+	ONLY_REF_SPLICE	NO	23	226	0.15	0.02	0.0119	0.0358	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	JMSU1_URINARY_TRACT	0.02	0.15	0.0477	TRUE	14	18	7	11	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	C21orf33--PWP2	1	1	C21orf33	3787	chr21:45557178:+	PWP2	28331	chr21:45550479:+	ONLY_REF_SPLICE	YES	224	125	0.01	0.02	0.0119	0.0119	LOCAL_REARRANGEMENT:+:[2424],C21orf33->chr21:45553487-45565605:+,chromosome_21_open_reading_frame_33,PWP2->PWP2_periodic_tryptophan_protein_homolog_(yeast),chr21:45527171-45551063:+	JMSU1_URINARY_TRACT	0.01	0.02	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	CRIM1--FEZ2	1	1	CRIM1	21418	chr2:36764689:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	425	447	0	0	0.0119	0.0119	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	JMSU1_URINARY_TRACT	0	0	0.0238	FALSE	1	4	0	11	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	DSCR4--KCNJ6	1	1	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0119	0.0119	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	JMSU1_URINARY_TRACT	0.33	1	0.0238	FALSE	0	24	0	27	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	KCNQ5-IT1--KCNQ5	1	1	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	NO	0	15	1	0.12	0.0119	0.0119	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	JMSU1_URINARY_TRACT	0.12	1	0.0238	FALSE	1	11	0	34	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	KIF13A--DEK	1	1	KIF13A	18087	chr6:17825999:-	DEK	52560	chr6:18258636:-	ONLY_REF_SPLICE	YES	134	1234	0.01	0	0.0119	0.0119	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1},KIF13A->chr6:17759414-17987854:-,kinesin_family_member_13A,DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-	JMSU1_URINARY_TRACT	0	0.01	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	MYEOV--CCND1	1	1	MYEOV	5305	chr11:69066895:+	CCND1	17254	chr11:69462762:+	ONLY_REF_SPLICE	YES	69	708	0.03	0	0.0119	0.0119	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	JMSU1_URINARY_TRACT	0	0.03	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	PAWR--RP1-78O14.1	1	1	PAWR	15902	chr12:79986391:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	59	0	0.03	1	0.0119	0.0119	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	JMSU1_URINARY_TRACT	0.03	1	0.0238	FALSE	3	4	0	12	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0119	0.0119	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JMSU1_URINARY_TRACT	1	1	0.0238	FALSE	93	270	15	244	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0119	0.0119	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	JMSU1_URINARY_TRACT	1	1	0.0238	TRUE	477	1352	189	275	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	RP11-476K15.1--CTD-2015H3.2	1	1	RP11-476K15.1	1041	chr18:1509224:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0119	0.0119	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	JMSU1_URINARY_TRACT	0.29	1	0.0238	FALSE	0	0	0	5	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	SDHC--NR5A2	1	1	SDHC	4895	chr1:161298287:+	NR5A2	27948	chr1:200143091:+	ONLY_REF_SPLICE	YES	752	78	0	0.03	0.0119	0.0119	SDHC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:161284047-161332984:+,succinate_dehydrogenase_complex_subunit_C,NR5A2->chr1:199996730-200146552:+,nuclear_receptor_subfamily_5_group_A_member_2	JMSU1_URINARY_TRACT	0	0.03	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000753
JMSU1_URINARY_TRACT	STK4--YWHAB	1	1	STK4	15640	chr20:43653771:+	YWHAB	28745	chr20:43530172:+	ONLY_REF_SPLICE	NO	154	702	0.01	0	0.0119	0.0119	GTEx_FI:{Blood=[count:2=pct:1.1],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[57942],STK4->Oncogene{Bushman},chr20:43595115-43708600:+,serine/threonine_kinase_4,YWHAB->chr20:43514317-43537173:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_beta	JMSU1_URINARY_TRACT	0	0.01	0.0238	FALSE	2	4	0	2	0	FALSE	ACH-000753
AN3CA_ENDOMETRIUM	CREB3L2--PTN	220	110	CREB3L2	1464	chr7:137686350:-	PTN	27504	chr7:136939714:-	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	2.3309	1.1654	CREB3L2->Oncogene{Bushman},cAMP_responsive_element_binding_protein_3-like_2,chr7:137559725-137686813:-,PTN->Oncogene{Bushman},chr7:136912088-137028611:-,pleiotrophin	AN3CA_ENDOMETRIUM	0.99	1	3.4963	TRUE	1	0	0	1	0	TRUE	ACH-000940
AN3CA_ENDOMETRIUM	TIMM23B--LINC00843	103	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0913	0.1907	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	AN3CA_ENDOMETRIUM	1	1	1.282	TRUE	508	994	45	981	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	CREB3L2--PTN	33	111	CREB3L2	1464	chr7:137686350:-	PTN	27497	chr7:136939721:-	ONLY_REF_SPLICE	YES	0	2	1	0.99	0.3496	1.176	CREB3L2->Oncogene{Bushman},cAMP_responsive_element_binding_protein_3-like_2,chr7:137559725-137686813:-,PTN->Oncogene{Bushman},chr7:136912088-137028611:-,pleiotrophin	AN3CA_ENDOMETRIUM	0.99	1	1.5256	TRUE	1	0	0	1	0	TRUE	ACH-000940
AN3CA_ENDOMETRIUM	TIMM23--RP11-464F9.1	57	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6039	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	AN3CA_ENDOMETRIUM	1	1	0.6039	TRUE	519	3926	326	965	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	VGLL4--PRKG1	42	29	VGLL4	9312	chr3:11684911:-	PRKG1	33115	chr10:53227483:+	ONLY_REF_SPLICE	YES	28	12	0.72	0.86	0.445	0.3073	{Klijn_CCL:Uterus=1},VGLL4->chr3:11597544-11762220:-,vestigial_like_family_member_4,PRKG1->chr10:52750945-54058110:+,protein_kinase,_cGMP-dependent,_type_I	AN3CA_ENDOMETRIUM	0.72	0.86	0.7523	TRUE	0	0	0	1	0	TRUE	ACH-000940
AN3CA_ENDOMETRIUM	RP11-680G10.1--GSE1	44	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	19	1	0.74	0.4662	0.1059	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	AN3CA_ENDOMETRIUM	0.74	1	0.5721	TRUE	458	1351	185	561	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	ZNF654--HMGB2	31	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3284	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	AN3CA_ENDOMETRIUM	1	1	0.3284	TRUE	0	0	0	518	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	HSP90AB1--MT-RNR2	30	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4041	0	0.01	1	0.3178	0.0318	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	AN3CA_ENDOMETRIUM	0.01	1	0.3496	FALSE	13	9	0	364	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	OR51S1--TP53I11	30	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3178	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	AN3CA_ENDOMETRIUM	1	1	0.3178	TRUE	402	216	10	229	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-TA--MT-TC	28	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2967	0.0106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	AN3CA_ENDOMETRIUM	1	1	0.3073	FALSE	462	80	0	856	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND6--MT-TE	27	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2861	0.0106	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AN3CA_ENDOMETRIUM	0.97	1	0.2967	FALSE	499	1288	110	792	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	GYS1--RP11-254F7.1	20	14	GYS1	10558	chr19:49477470:-	RP11-254F7.1	17620	chr2:10161867:+	INCL_NON_REF_SPLICE	YES	78	3	0.3	0.92	0.2119	0.1483	GYS1->chr19:49471382-49496567:-,glycogen_synthase_1,RP11-254F7.1->chr2:10161705-10162952:+	AN3CA_ENDOMETRIUM	0.3	0.92	0.3602	TRUE	0	0	0	1	0	TRUE	ACH-000940
AN3CA_ENDOMETRIUM	HSP90AB1--MT-RNR2	19	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4084	0	0.01	1	0.2013	0.0318	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	AN3CA_ENDOMETRIUM	0.01	1	0.2331	FALSE	13	9	0	364	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND6--MT-TE	15	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1589	0.0106	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AN3CA_ENDOMETRIUM	0.94	1	0.1695	FALSE	499	1288	110	792	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND4--MT-ATP8	14	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1483	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AN3CA_ENDOMETRIUM	1	1	0.1483	FALSE	230	198	14	283	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND6--MT-TE	11	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.1165	0.1059	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AN3CA_ENDOMETRIUM	0.88	1	0.2224	FALSE	499	1288	110	792	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	RP11-123O10.4--GRIP1	11	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1165	0.0636	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	AN3CA_ENDOMETRIUM	1	1	0.1801	FALSE	416	2512	207	587	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	11	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.93	0.93	0.1165	0.0318	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	AN3CA_ENDOMETRIUM	0.93	0.93	0.1483	FALSE	515	4851	409	746	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	RP11-680G10.1--GSE1	11	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	71	1	0.15	0.1165	0.0212	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	AN3CA_ENDOMETRIUM	0.15	1	0.1377	TRUE	465	1949	224	605	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND4--MT-ATP8	9	1	MT-ND4	1477	chrM:11236:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	19531	537	0	0.02	0.0954	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AN3CA_ENDOMETRIUM	0	0.02	0.106	FALSE	231	217	16	283	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-TA--MT-TC	8	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0848	0.0106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	AN3CA_ENDOMETRIUM	1	1	0.0954	FALSE	462	80	0	856	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND4--MT-ATP8	7	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	18851	0	0	1	0.0742	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AN3CA_ENDOMETRIUM	0	1	0.0954	FALSE	231	205	14	283	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	6	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0636	0.0636	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	AN3CA_ENDOMETRIUM	0.92	1	0.1272	FALSE	407	2205	196	549	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MEST--MT-ND4L	5	9	MEST	6917	chr7:130135301:+	MT-ND4L	19306	chrM:10477:+	INCL_NON_REF_SPLICE	YES	6313	0	0	1	0.053	0.0954	MEST->chr7:130126012-130146133:+,mesoderm_specific_transcript,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	AN3CA_ENDOMETRIUM	0	1	0.1484	FALSE	0	0	0	1	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MEST--ALDOA	6	2	MEST	6910	chr7:130135294:+	ALDOA	28774	chr16:30080248:+	INCL_NON_REF_SPLICE	YES	6265	2541	0	0	0.0636	0.0212	MEST->chr7:130126012-130146133:+,mesoderm_specific_transcript,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	AN3CA_ENDOMETRIUM	0	0	0.0848	FALSE	0	0	0	1	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND6--MT-TE	3	13	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0318	0.1377	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AN3CA_ENDOMETRIUM	0.89	1	0.1695	FALSE	499	1288	110	792	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND6--MT-TE	3	13	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	3	0	0.84	1	0.0318	0.1377	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AN3CA_ENDOMETRIUM	0.84	1	0.1695	FALSE	499	1288	110	792	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0636	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AN3CA_ENDOMETRIUM	1	1	0.0636	FALSE	183	104	9	328	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ATP6--MT-CO1	6	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0636	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AN3CA_ENDOMETRIUM	1	1	0.0636	FALSE	183	104	9	328	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND4--MT-ATP8	4	7	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5584	72	0	0.13	0.0424	0.0742	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AN3CA_ENDOMETRIUM	0	0.13	0.1166	FALSE	218	210	16	281	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MEST--ALDOA	5	2	MEST	6921	chr7:130135305:+	ALDOA	28776	chr16:30080250:+	INCL_NON_REF_SPLICE	YES	6248	2606	0	0	0.053	0.0212	MEST->chr7:130126012-130146133:+,mesoderm_specific_transcript,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	AN3CA_ENDOMETRIUM	0	0	0.0742	FALSE	0	0	0	1	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND4--MT-ATP8	5	2	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	18786	0	0	1	0.053	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AN3CA_ENDOMETRIUM	0	1	0.0742	FALSE	231	205	14	283	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND6--MT-TE	5	2	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.053	0.0212	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AN3CA_ENDOMETRIUM	0.78	1	0.0742	FALSE	499	1288	110	792	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MEST--MT-ND5	5	1	MEST	6890	chr7:130135274:+	MT-ND5	20016	chrM:13054:+	INCL_NON_REF_SPLICE	YES	5005	2526	0	0	0.053	0.0106	MEST->chr7:130126012-130146133:+,mesoderm_specific_transcript,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	AN3CA_ENDOMETRIUM	0	0	0.0636	FALSE	0	0	0	3	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ATP6--MT-CO1	5	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	4835	chrM:6057:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.053	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AN3CA_ENDOMETRIUM	1	1	0.053	FALSE	183	97	9	327	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND4--MT-ATP8	4	3	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	20396	3	0	0.7	0.0424	0.0318	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AN3CA_ENDOMETRIUM	0	0.7	0.0742	FALSE	231	217	16	283	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND4--MT-ATP8	4	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18675	3	0	0.7	0.0424	0.0318	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AN3CA_ENDOMETRIUM	0	0.7	0.0742	FALSE	231	217	16	283	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ATP6--MT-CO1	4	2	MT-ATP6	1444	chrM:8970:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	12220	19146	0	0	0.0424	0.0212	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AN3CA_ENDOMETRIUM	0	0	0.0636	FALSE	183	104	9	328	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	PFKL--MT-ND4L	4	2	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	449	0	0.01	1	0.0424	0.0212	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	AN3CA_ENDOMETRIUM	0.01	1	0.0636	FALSE	0	0	0	33	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND4--MT-ATP8	4	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	14699	3	0	0.62	0.0424	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AN3CA_ENDOMETRIUM	0	0.62	0.053	FALSE	230	193	14	283	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ATP6--MT-CO1	4	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AN3CA_ENDOMETRIUM	1	1	0.0424	FALSE	183	104	9	328	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ATP6--MT-CO1	4	0	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AN3CA_ENDOMETRIUM	1	1	0.0424	FALSE	183	104	9	328	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ATP6--MT-CO1	4	0	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AN3CA_ENDOMETRIUM	1	1	0.0424	FALSE	183	104	9	328	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ATP6--MT-CO1	4	0	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AN3CA_ENDOMETRIUM	1	1	0.0424	FALSE	183	104	9	328	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND4--MT-ATP8	4	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AN3CA_ENDOMETRIUM	1	1	0.0424	FALSE	231	205	14	283	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND6--MT-TE	3	4	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0.0424	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AN3CA_ENDOMETRIUM	1	1	0.0742	FALSE	499	1288	110	792	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AN3CA_ENDOMETRIUM	1	1	0.0424	FALSE	499	1288	110	792	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	ZNF654--HMGB2	4	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	AN3CA_ENDOMETRIUM	1	1	0.0424	TRUE	0	0	0	518	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND4--MT-ATP8	3	3	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	19473	0	0	1	0.0318	0.0318	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AN3CA_ENDOMETRIUM	0	1	0.0636	FALSE	231	217	16	283	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0318	0.0318	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	AN3CA_ENDOMETRIUM	0.86	1	0.0636	FALSE	467	2173	244	435	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MEST--ALDOA	3	2	MEST	6911	chr7:130135295:+	ALDOA	27103	chr16:30078577:+	INCL_NON_REF_SPLICE	YES	6238	2950	0	0	0.0318	0.0212	MEST->chr7:130126012-130146133:+,mesoderm_specific_transcript,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	AN3CA_ENDOMETRIUM	0	0	0.053	FALSE	0	0	0	1	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND4--MT-ATP8	3	2	MT-ND4	1452	chrM:11211:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	20182	3	0	0.62	0.0318	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AN3CA_ENDOMETRIUM	0	0.62	0.053	FALSE	231	217	16	283	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0.0636	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	AN3CA_ENDOMETRIUM	1	1	0.0848	FALSE	192	492	57	212	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	VGLL4--PRKG1	1	10	VGLL4	9312	chr3:11684911:-	PRKG1	34229	chr10:53564345:+	ONLY_REF_SPLICE	YES	28	22	0.28	0.33	0.0106	0.1059	{Klijn_CCL:Uterus=1},VGLL4->chr3:11597544-11762220:-,vestigial_like_family_member_4,PRKG1->chr10:52750945-54058110:+,protein_kinase,_cGMP-dependent,_type_I	AN3CA_ENDOMETRIUM	0.28	0.33	0.1165	TRUE	0	0	0	1	0	TRUE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND4--MT-ATP8	3	1	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	14649	0	0	1	0.0318	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AN3CA_ENDOMETRIUM	0	1	0.0424	FALSE	230	197	14	283	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	RP11-141M1.3--STARD13	3	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	1	0.67	0.8	0.0318	0.0106	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	AN3CA_ENDOMETRIUM	0.67	0.8	0.0424	FALSE	141	264	50	91	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MEST--MT-ND5	3	0	MEST	6918	chr7:130135302:+	MT-ND5	20040	chrM:13078:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	MEST->chr7:130126012-130146133:+,mesoderm_specific_transcript,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	AN3CA_ENDOMETRIUM	1	1	0.0318	FALSE	0	0	0	3	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ATP6--MT-CO1	3	0	MT-ATP6	1139	chrM:8665:+	MT-CO1	5217	chrM:6439:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AN3CA_ENDOMETRIUM	1	1	0.0318	FALSE	183	104	9	328	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ATP6--MT-CO1	3	0	MT-ATP6	1133	chrM:8659:+	MT-CO1	5176	chrM:6398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	AN3CA_ENDOMETRIUM	1	1	0.0318	FALSE	183	104	9	328	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND4--MT-ATP8	3	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	AN3CA_ENDOMETRIUM	1	1	0.0318	FALSE	231	204	14	283	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AN3CA_ENDOMETRIUM	1	1	0.0318	FALSE	499	1288	110	792	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	STUB1--MT-ND4	3	0	STUB1	3202	chr16:732425:+	MT-ND4	7034	chrM:11146:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	STUB1->STIP1_homology_and_U-box_containing_protein_1,chr16:730224-732870:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	AN3CA_ENDOMETRIUM	1	1	0.0318	FALSE	0	0	0	1	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	CD320--ARL5A	2	0	CD320	3096	chr19:8369915:-	ARL5A	15313	chr2:152663486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	CD320->CD320_molecule,chr19:8367011-8373240:-,ARL5A->ADP_ribosylation_factor_like_GTPase_5A,chr2:152645498-152685006:-	AN3CA_ENDOMETRIUM	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000940
AN3CA_ENDOMETRIUM	DDHD1--CBWD2	2	0	DDHD1	4498	chr14:53570401:-	CBWD2	43346	chr2:114228610:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	DDHD1->DDHD_domain_containing_1,chr14:53510686-53620000:-,CBWD2->COBW_domain_containing_2,chr2:114195268-114253766:+	AN3CA_ENDOMETRIUM	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000940
AN3CA_ENDOMETRIUM	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	AN3CA_ENDOMETRIUM	1	1	0.0212	TRUE	62	24	1	171	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	AN3CA_ENDOMETRIUM	1	1	0.0212	FALSE	272	151	14	158	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	YWHAE--CRK	2	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	AN3CA_ENDOMETRIUM	1	1	0.0212	TRUE	6	50	7	115	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	RP11-141M1.3--STARD13	1	2	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	1	0.75	0.75	0.0106	0.0212	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	AN3CA_ENDOMETRIUM	0.75	0.75	0.0318	FALSE	49	120	16	70	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	CREB3L2--PTN	1	1	CREB3L2	1464	chr7:137686350:-	PTN	32048	chr7:136912822:-	ONLY_REF_SPLICE	YES	0	80	1	0.02	0.0106	0.0106	CREB3L2->Oncogene{Bushman},cAMP_responsive_element_binding_protein_3-like_2,chr7:137559725-137686813:-,PTN->Oncogene{Bushman},chr7:136912088-137028611:-,pleiotrophin	AN3CA_ENDOMETRIUM	0.02	1	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	DANCR--FAM192A	1	1	DANCR	1530	chr4:53579126:+	FAM192A	13285	chr16:57207781:-	ONLY_REF_SPLICE	YES	388	117	0.01	0.02	0.0106	0.0106	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	AN3CA_ENDOMETRIUM	0.01	0.02	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	DANCR--PHF14	1	1	DANCR	1530	chr4:53579126:+	PHF14	31809	chr7:11150977:+	ONLY_REF_SPLICE	YES	388	87	0.01	0.02	0.0106	0.0106	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	AN3CA_ENDOMETRIUM	0.01	0.02	0.0212	FALSE	0	5	0	5	1	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	FAM208B--GDI2	1	1	FAM208B	12206	chr10:5766496:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	61	357	0.03	0.01	0.0106	0.0106	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	AN3CA_ENDOMETRIUM	0.01	0.03	0.0212	FALSE	0	0	0	2	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	SH3GL1--HOXC5	1	1	SH3GL1	1224	chr19:4400321:-	HOXC5	17184	chr12:54428062:+	ONLY_REF_SPLICE	YES	74	18	0.03	0.1	0.0106	0.0106	SH3GL1->Oncogene{Bushman},SH3_domain_containing_GRB2_like_1,chr19:4360367-4400544:-,HOXC5->chr12:54426637-54429142:+,homeobox_C5	AN3CA_ENDOMETRIUM	0.03	0.1	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	UBE2G2--EMC8	1	1	UBE2G2	7524	chr21:46197214:-	EMC8	21921	chr16:85813473:-	ONLY_REF_SPLICE	YES	259	131	0.01	0.02	0.0106	0.0106	UBE2G2->chr21:46188955-46221934:-,ubiquitin_conjugating_enzyme_E2_G2,EMC8->ER_membrane_protein_complex_subunit_8,chr16:85805364-85833214:-	AN3CA_ENDOMETRIUM	0.01	0.02	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000940
AN3CA_ENDOMETRIUM	VGLL4--PRKG1	1	1	VGLL4	4478	chr3:11744445:-	PRKG1	33115	chr10:53227483:+	ONLY_REF_SPLICE	YES	3	12	0.4	0.14	0.0106	0.0106	{Klijn_CCL:Uterus=1},VGLL4->chr3:11597544-11762220:-,vestigial_like_family_member_4,PRKG1->chr10:52750945-54058110:+,protein_kinase,_cGMP-dependent,_type_I	AN3CA_ENDOMETRIUM	0.14	0.4	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000940
AN3CA_ENDOMETRIUM	ZNF292--ORC3	1	1	ZNF292	2606	chr6:87865477:+	ORC3	42344	chr6:88344563:+	ONLY_REF_SPLICE	YES	22	66	0.08	0.03	0.0106	0.0106	ZNF292->chr6:87862551-87973914:+,zinc_finger_protein_292,ORC3->chr6:88299839-88377169:+,origin_recognition_complex_subunit_3	AN3CA_ENDOMETRIUM	0.03	0.08	0.0212	TRUE	0	1	0	1	1	FALSE	ACH-000940
NCIH522_LUNG	KANSL1--ARL17B	102	44	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	81	102	0.64	0.59	1.148	0.4952	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH522_LUNG	0.59	0.64	1.6432	TRUE	181	1564	124	196	0	FALSE	ACH-000343
NCIH522_LUNG	TIMM23B--LINC00843	103	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.1592	0.3714	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH522_LUNG	0.99	1	1.5306	TRUE	508	994	45	981	0	FALSE	ACH-000343
NCIH522_LUNG	MT-TA--MT-TC	88	11	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9904	0.1238	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH522_LUNG	1	1	1.1142	FALSE	462	80	0	856	0	FALSE	ACH-000343
NCIH522_LUNG	TIMM23--RP11-464F9.1	57	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	201	1	0.24	0.98	0.6415	0.0675	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH522_LUNG	0.24	0.98	0.709	TRUE	519	3926	326	965	0	FALSE	ACH-000343
NCIH522_LUNG	NRDE2--CALM1	32	25	NRDE2	16151	chr14:90752698:-	CALM1	26763	chr14:90866409:+	ONLY_REF_SPLICE	YES	22	1097	0.72	0.05	0.3601	0.2814	LOCAL_INVERSION:-:+:[64365],NRDE2->NRDE-2,_necessary_for_RNA_interference,_domain_containing,chr14:90742580-90798481:-,CALM1->calmodulin_1_(phosphorylase_kinase,_delta),chr14:90862846-90874605:+	NCIH522_LUNG	0.05	0.72	0.6415	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	R3HDM2--ARHGAP9	35	5	R3HDM2	1286	chr12:57824503:-	ARHGAP9	34906	chr12:57874617:-	ONLY_REF_SPLICE	YES	0	2	1	0.95	0.3939	0.0563	LOCAL_REARRANGEMENT:-:[41250],R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	NCIH522_LUNG	0.95	1	0.4502	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	PXN--MSI1	30	12	PXN	1155	chr12:120703420:-	MSI1	33793	chr12:120785317:-	ONLY_REF_SPLICE	YES	16	20	0.72	0.68	0.3376	0.1351	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[75559],PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,MSI1->chr12:120779133-120806983:-,musashi_RNA_binding_protein_1	NCIH522_LUNG	0.68	0.72	0.4727	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	ZNF217--BCAS1	28	7	ZNF217	3627	chr20:52214170:-	BCAS1	31307	chr20:52570234:-	ONLY_REF_SPLICE	YES	37	2	0.49	0.95	0.3151	0.0788	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	NCIH522_LUNG	0.49	0.95	0.3939	TRUE	0	0	0	2	0	TRUE	ACH-000343
NCIH522_LUNG	C1orf52--DDAH1	20	14	C1orf52	2149	chr1:85724207:-	DDAH1	22026	chr1:85824530:-	ONLY_REF_SPLICE	YES	78	142	0.3	0.19	0.2251	0.1576	LOCAL_REARRANGEMENT:-:[58809],C1orf52->chr1:85715639-85725355:-,chromosome_1_open_reading_frame_52,DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1	NCIH522_LUNG	0.19	0.3	0.3827	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	UBA2--GPI	14	19	UBA2	6735	chr19:34925873:+	GPI	34351	chr19:34884153:+	ONLY_REF_SPLICE	YES	318	629	0.09	0.05	0.1576	0.2138	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[26196],UBA2->chr19:34919257-34960853:+,ubiquitin_like_modifier_activating_enzyme_2,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	NCIH522_LUNG	0.05	0.09	0.3714	TRUE	0	0	0	1	0	FALSE	ACH-000343
NCIH522_LUNG	HSF2BP--AP001610.5	13	19	HSF2BP	6915	chr21:45050203:-	AP001610.5	13905	chr21:42814673:-	INCL_NON_REF_SPLICE	YES	32	0	0.5	1	0.1463	0.2138	HSF2BP->chr21:44949072-45079374:-,heat_shock_transcription_factor_2_binding_protein,AP001610.5->chr21:42813321-42814669:-	NCIH522_LUNG	0.5	1	0.3601	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	ARHGAP10--TMEM184C	16	6	ARHGAP10	1393	chr4:148653606:+	TMEM184C	37262	chr4:148544985:+	ONLY_REF_SPLICE	YES	7	73	0.76	0.23	0.1801	0.0675	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:+:[60019],ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,TMEM184C->chr4:148538534-148593195:+,transmembrane_protein_184C	NCIH522_LUNG	0.23	0.76	0.2476	TRUE	0	1	0	2	1	TRUE	ACH-000343
NCIH522_LUNG	PLXDC1--TAF13	17	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1913	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH522_LUNG	1	1	0.1913	TRUE	7	10	0	216	0	FALSE	ACH-000343
NCIH522_LUNG	RP11-680G10.1--GSE1	13	11	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	72	1	0.25	0.1463	0.1238	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH522_LUNG	0.25	1	0.2701	TRUE	458	1351	185	561	0	FALSE	ACH-000343
NCIH522_LUNG	MT-CO3--MT-ATP6	13	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	1	1	0.93	0.93	0.1463	0.0113	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH522_LUNG	0.93	0.93	0.1576	FALSE	189	492	56	216	0	FALSE	ACH-000343
NCIH522_LUNG	HSP90AB1--MT-RNR2	11	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4144	0	0	1	0.1238	0.0338	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH522_LUNG	0	1	0.1576	FALSE	13	9	0	364	0	FALSE	ACH-000343
NCIH522_LUNG	ZNF217--BCAS1	9	8	ZNF217	4711	chr20:52210295:-	BCAS1	31307	chr20:52570234:-	ONLY_REF_SPLICE	YES	39	2	0.3	0.89	0.1013	0.09	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	NCIH522_LUNG	0.3	0.89	0.1913	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	HSP90AB1--MT-RNR2	10	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4158	0	0	1	0.1125	0.0338	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH522_LUNG	0	1	0.1463	FALSE	13	9	0	364	0	FALSE	ACH-000343
NCIH522_LUNG	MT-TA--MT-TC	8	11	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.09	0.1238	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH522_LUNG	1	1	0.2138	FALSE	462	80	0	856	0	FALSE	ACH-000343
NCIH522_LUNG	MT-CO2--MT-CO1	9	3	MT-CO2	1249	chrM:7834:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	3	19982	0.8	0	0.1013	0.0338	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH522_LUNG	0	0.8	0.1351	FALSE	36	10	0	27	0	FALSE	ACH-000343
NCIH522_LUNG	R3HDM2--ARHGAP9	9	3	R3HDM2	1286	chr12:57824503:-	ARHGAP9	36316	chr12:57873207:-	ONLY_REF_SPLICE	YES	0	16	1	0.43	0.1013	0.0338	LOCAL_REARRANGEMENT:-:[41250],R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	NCIH522_LUNG	0.43	1	0.1351	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	MT-TA--MT-TC	9	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1013	0.0225	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH522_LUNG	1	1	0.1238	FALSE	462	80	0	856	0	FALSE	ACH-000343
NCIH522_LUNG	HSF2BP--AP001610.5	5	14	HSF2BP	6879	chr21:45050239:-	AP001610.5	13905	chr21:42814673:-	INCL_NON_REF_SPLICE	YES	31	0	0.38	1	0.0563	0.1576	HSF2BP->chr21:44949072-45079374:-,heat_shock_transcription_factor_2_binding_protein,AP001610.5->chr21:42813321-42814669:-	NCIH522_LUNG	0.38	1	0.2139	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	RP11-680G10.1--GSE1	6	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	135	1	0.09	0.0675	0.09	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH522_LUNG	0.09	1	0.1575	TRUE	465	1949	224	605	0	FALSE	ACH-000343
NCIH522_LUNG	ZNF217--BCAS1	6	8	ZNF217	4711	chr20:52210295:-	BCAS1	30241	chr20:52574036:-	ONLY_REF_SPLICE	YES	39	2	0.26	0.88	0.0675	0.09	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	NCIH522_LUNG	0.26	0.88	0.1575	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	WWC2--TENM3	7	2	WWC2	1330	chr4:184020775:+	TENM3	43811	chr4:183522077:+	ONLY_REF_SPLICE	YES	23	163	0.28	0.05	0.0788	0.0225	WWC2->WW_and_C2_domain_containing_2,chr4:184020446-184241930:+,TENM3->chr4:183065140-183724177:+,teneurin_transmembrane_protein_3	NCIH522_LUNG	0.05	0.28	0.1013	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	LMNB2--RP11-180M15.3	7	0	LMNB2	2464	chr19:2444402:-	RP11-180M15.3	17495	chr12:12837839:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0788	0	LMNB2->chr19:2427636-2456994:-,lamin_B2,RP11-180M15.3->chr12:12821916-12838009:+	NCIH522_LUNG	1	1	0.0788	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	MT-TA--MT-TC	3	16	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0.1801	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH522_LUNG	1	1	0.2139	FALSE	462	80	0	856	0	FALSE	ACH-000343
NCIH522_LUNG	HSF2BP--AP001610.5	3	15	HSF2BP	6915	chr21:45050203:-	AP001610.5	14781	chr21:42813797:-	ONLY_REF_SPLICE	YES	32	0	0.36	1	0.0338	0.1688	HSF2BP->chr21:44949072-45079374:-,heat_shock_transcription_factor_2_binding_protein,AP001610.5->chr21:42813321-42814669:-	NCIH522_LUNG	0.36	1	0.2026	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	EEF2--RPS28	6	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	3896	0	0	1	0.0675	0.0113	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH522_LUNG	0	1	0.0788	FALSE	0	0	0	100	0	FALSE	ACH-000343
NCIH522_LUNG	MT-CO3--MT-ATP6	4	9	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	NO	1	3	0.93	0.81	0.045	0.1013	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH522_LUNG	0.81	0.93	0.1463	FALSE	189	492	56	216	0	FALSE	ACH-000343
NCIH522_LUNG	MT-CO3--MT-ATP6	5	5	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.62	0.0563	0.0563	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH522_LUNG	0.62	1	0.1126	FALSE	189	492	56	216	0	FALSE	ACH-000343
NCIH522_LUNG	MT-TA--MT-TC	3	13	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0.1463	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH522_LUNG	1	1	0.1801	FALSE	462	80	0	856	0	FALSE	ACH-000343
NCIH522_LUNG	MT-CO1--COL3A1	6	0	MT-CO1	1605	chrM:6508:+	COL3A1	28798	chr2:189872273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	NCIH522_LUNG	1	1	0.0675	FALSE	0	0	0	12	0	FALSE	ACH-000343
NCIH522_LUNG	MT-CO3--MT-ATP6	3	12	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	15	0.94	0.5	0.0338	0.1351	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH522_LUNG	0.5	0.94	0.1689	FALSE	189	492	56	216	0	FALSE	ACH-000343
NCIH522_LUNG	MT-CO3--MT-ATP6	3	12	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	6	0.94	0.71	0.0338	0.1351	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH522_LUNG	0.71	0.94	0.1689	FALSE	189	492	56	216	0	FALSE	ACH-000343
NCIH522_LUNG	COL11A1--IVNS1ABP	5	3	COL11A1	4969	chr1:103540174:-	IVNS1ABP	70014	chr1:185274775:-	ONLY_REF_SPLICE	YES	843	594	0.01	0.01	0.0563	0.0338	{Klijn_CCL:Lung=1},COL11A1->Oncogene{Bushman},chr1:103342023-103574052:-,collagen_type_XI_alpha_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NCIH522_LUNG	0.01	0.01	0.0901	FALSE	0	0	0	3	0	FALSE	ACH-000343
NCIH522_LUNG	FTH1--ACTG1	5	3	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	4740	2	0	0.8	0.0563	0.0338	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH522_LUNG	0	0.8	0.0901	FALSE	0	0	0	64	0	FALSE	ACH-000343
NCIH522_LUNG	FTH1--ACTG1	4	3	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	4653	2	0	0.78	0.045	0.0338	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH522_LUNG	0	0.78	0.0788	FALSE	0	0	0	64	0	FALSE	ACH-000343
NCIH522_LUNG	MT-CO3--MT-ATP6	4	3	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	1	1	0.88	0.88	0.045	0.0338	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH522_LUNG	0.88	0.88	0.0788	FALSE	189	492	56	216	0	FALSE	ACH-000343
NCIH522_LUNG	ZNF217--BCAS1	3	7	ZNF217	3627	chr20:52214170:-	BCAS1	30241	chr20:52574036:-	ONLY_REF_SPLICE	YES	37	2	0.21	0.83	0.0338	0.0788	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	NCIH522_LUNG	0.21	0.83	0.1126	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.045	0.0225	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH522_LUNG	0.86	1	0.0675	FALSE	515	4851	409	746	0	FALSE	ACH-000343
NCIH522_LUNG	WI2-1896O14.1--RP11-353N4.1	4	2	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.045	0.0225	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	NCIH522_LUNG	1	1	0.0675	TRUE	361	258	24	38	0	FALSE	ACH-000343
NCIH522_LUNG	RP11-123O10.4--GRIP1	4	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.045	0.0113	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH522_LUNG	1	1	0.0563	FALSE	416	2512	207	587	0	FALSE	ACH-000343
NCIH522_LUNG	HSF2BP--AP001610.5	3	4	HSF2BP	5773	chr21:45053153:-	AP001610.5	13905	chr21:42814673:-	INCL_NON_REF_SPLICE	YES	25	0	0.22	1	0.0338	0.045	HSF2BP->chr21:44949072-45079374:-,heat_shock_transcription_factor_2_binding_protein,AP001610.5->chr21:42813321-42814669:-	NCIH522_LUNG	0.22	1	0.0788	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.045	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH522_LUNG	1	1	0.045	TRUE	22	156	2	142	0	FALSE	ACH-000343
NCIH522_LUNG	FTH1--ACTG1	3	3	FTH1	1187	chr11:61734946:-	ACTG1	10556	chr17:79479820:-	INCL_NON_REF_SPLICE	YES	3699	2	0	0.75	0.0338	0.0338	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH522_LUNG	0	0.75	0.0676	FALSE	0	0	0	64	0	FALSE	ACH-000343
NCIH522_LUNG	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0.0338	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH522_LUNG	1	1	0.0676	FALSE	467	2173	244	435	0	FALSE	ACH-000343
NCIH522_LUNG	APP--MT-ND2	3	1	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	1235	4420	0	0	0.0338	0.0113	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH522_LUNG	0	0	0.0451	FALSE	0	1	0	51	0	FALSE	ACH-000343
NCIH522_LUNG	FGF2--BBS12	3	1	FGF2	2749	chr4:123797579:+	BBS12	15147	chr4:123663038:+	ONLY_REF_SPLICE	YES	498	28	0.01	0.12	0.0338	0.0113	LOCAL_REARRANGEMENT:+:[81765],FGF2->Oncogene{Bushman},chr4:123747863-123819391:+,fibroblast_growth_factor_2,BBS12->Bardet-Biedl_syndrome_12,chr4:123653857-123666098:+	NCIH522_LUNG	0.01	0.12	0.0451	FALSE	0	0	0	1	0	FALSE	ACH-000343
NCIH522_LUNG	KANSL1--ARL17B	1	9	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	NO	95	102	0.1	0.09	0.0113	0.1013	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH522_LUNG	0.09	0.1	0.1126	TRUE	105	90	7	93	0	FALSE	ACH-000343
NCIH522_LUNG	FGF2--BBS12	3	0	FGF2	1645	chr4:123748507:+	BBS12	15147	chr4:123663038:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:+:[81765],FGF2->Oncogene{Bushman},chr4:123747863-123819391:+,fibroblast_growth_factor_2,BBS12->Bardet-Biedl_syndrome_12,chr4:123653857-123666098:+	NCIH522_LUNG	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	HMGA2--MSRB3	3	0	HMGA2	5315	chr12:66232349:+	MSRB3	38002	chr12:65856935:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3	NCIH522_LUNG	1	1	0.0338	TRUE	0	3	0	1	3	TRUE	ACH-000343
NCIH522_LUNG	HSF2BP--AP001610.5	2	4	HSF2BP	5773	chr21:45053153:-	AP001610.5	14781	chr21:42813797:-	ONLY_REF_SPLICE	YES	25	0	0.19	1	0.0225	0.045	HSF2BP->chr21:44949072-45079374:-,heat_shock_transcription_factor_2_binding_protein,AP001610.5->chr21:42813321-42814669:-	NCIH522_LUNG	0.19	1	0.0675	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	LINC00478--LINC00945	2	4	LINC00478	7469	chr21:17764005:+	LINC00945	26743	chr21:34435098:+	ONLY_REF_SPLICE	YES	10	0	0.38	1	0.0225	0.045	LINC00478->chr21:17442842-17999716:+,LINC00945->chr21:34430135-34437289:+,long_intergenic_non-protein_coding_RNA_945	NCIH522_LUNG	0.38	1	0.0675	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	RP11-120D5.1--MID1	2	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	98	0.56	0.05	0.0225	0.0338	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH522_LUNG	0.05	0.56	0.0563	FALSE	16	356	14	466	0	FALSE	ACH-000343
NCIH522_LUNG	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0225	0.0225	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH522_LUNG	0.8	1	0.045	FALSE	407	2205	196	549	0	FALSE	ACH-000343
NCIH522_LUNG	FAM66B--RP11-89K10.1	2	1	FAM66B	2608	chr8:7206605:-	RP11-89K10.1	22172	chr8:127725531:+	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0225	0.0113	FAM66B->chr8:7159133-7212876:-,family_with_sequence_similarity_66_member_B,RP11-89K10.1->chr8:127570120-127725660:+	NCIH522_LUNG	0.27	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	PAK2--PIGX	2	1	PAK2	2509	chr3:196509704:+	PIGX	27705	chr3:196443729:+	ONLY_REF_SPLICE	YES	282	27	0.01	0.1	0.0225	0.0113	LOCAL_REARRANGEMENT:+:[3850],PAK2->chr3:196466728-196559518:+,p21_(RAC1)_activated_kinase_2,PIGX->chr3:196366646-196462878:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_X	NCIH522_LUNG	0.01	0.1	0.0338	FALSE	0	0	0	1	0	FALSE	ACH-000343
NCIH522_LUNG	PRR16--CTD-2334D19.1	2	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	120	0	0.02	1	0.0225	0.0113	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH522_LUNG	0.02	1	0.0338	FALSE	56	216	12	147	0	FALSE	ACH-000343
NCIH522_LUNG	ASAP2--STAMBP	2	0	ASAP2	3685	chr2:9437574:+	STAMBP	35264	chr2:74056532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+,STAMBP->STAM_binding_protein,chr2:74056086-74100786:+	NCIH522_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	NCIH522_LUNG	1	1	0.0225	TRUE	2	8	0	24	0	FALSE	ACH-000343
NCIH522_LUNG	EEF2--IRF3	2	0	EEF2	7141	chr19:3979327:-	IRF3	15620	chr19:50166771:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,IRF3->chr19:50162826-50169132:-,interferon_regulatory_factor_3	NCIH522_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	FUBP1--IVNS1ABP	2	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NCIH522_LUNG	1	1	0.0225	TRUE	1	4	0	16	0	TRUE	ACH-000343
NCIH522_LUNG	LINC00478--LINC00945	1	4	LINC00478	8883	chr21:17792061:+	LINC00945	26743	chr21:34435098:+	ONLY_REF_SPLICE	YES	12	0	0.29	1	0.0113	0.045	LINC00478->chr21:17442842-17999716:+,LINC00945->chr21:34430135-34437289:+,long_intergenic_non-protein_coding_RNA_945	NCIH522_LUNG	0.29	1	0.0563	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	METTL16--PYGL	2	0	METTL16	11438	chr17:2341403:-	PYGL	32971	chr14:51387785:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	METTL16->chr17:2308856-2415185:-,methyltransferase_like_16,PYGL->chr14:51324609-51411454:-,phosphorylase,_glycogen,_liver	NCIH522_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	PDGFC--GRIA2	2	0	PDGFC	1609	chr4:157891938:-	GRIA2	28358	chr4:158224704:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	PDGFC->chr4:157681606-157892546:-,platelet_derived_growth_factor_C,GRIA2->chr4:158125334-158287227:+,glutamate_ionotropic_receptor_AMPA_type_subunit_2	NCIH522_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	POLR2D--SAP130	2	0	POLR2D	1130	chr2:128615602:-	SAP130	25852	chr2:128712918:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LOCAL_REARRANGEMENT:-:[83060],POLR2D->chr2:128603840-128615731:-,polymerase_(RNA)_II_subunit_D,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	NCIH522_LUNG	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	RPS6KB1--VMP1	2	0	RPS6KB1	15604	chr17:58018304:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH522_LUNG	1	1	0.0225	TRUE	0	0	0	3	0	TRUE	ACH-000343
NCIH522_LUNG	RPS6KB1--VMP1	2	0	RPS6KB1	1240	chr17:57970686:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH522_LUNG	1	1	0.0225	TRUE	0	9	0	10	6	TRUE	ACH-000343
NCIH522_LUNG	TRIT1--PPIE	2	0	TRIT1	1194	chr1:40348990:-	PPIE	34056	chr1:40229361:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH522_LUNG	1	1	0.0225	TRUE	0	0	0	4	0	TRUE	ACH-000343
NCIH522_LUNG	NDUFA4--PHF14	1	3	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	1148	99	0	0.04	0.0113	0.0338	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH522_LUNG	0	0.04	0.0451	FALSE	19	32	3	60	0	FALSE	ACH-000343
NCIH522_LUNG	R3HDM2--ARHGAP9	1	3	R3HDM2	1286	chr12:57824503:-	ARHGAP9	35952	chr12:57873571:-	ONLY_REF_SPLICE	YES	0	3	1	0.57	0.0113	0.0338	LOCAL_REARRANGEMENT:-:[41250],R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,ARHGAP9->Oncogene{Bushman},Rho_GTPase_activating_protein_9,chr12:57866038-57882597:-	NCIH522_LUNG	0.57	1	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	14	34	0.18	0.08	0.0113	0.0225	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH522_LUNG	0.08	0.18	0.0338	FALSE	0	5	0	14	0	FALSE	ACH-000343
NCIH522_LUNG	ARMCX4--RPL36A	1	1	ARMCX4	4048	chrX:100701032:+	RPL36A	35704	chrX:100650323:+	ONLY_REF_SPLICE	NO	30	1765	0.06	0	0.0113	0.0113	LOCAL_REARRANGEMENT:+:[22170],ARMCX4->armadillo_repeat_containing,_X-linked_4,chrX:100673275-100788446:+,RPL36A->chrX:100645812-100651105:+,ribosomal_protein_L36a	NCIH522_LUNG	0	0.06	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000343
NCIH522_LUNG	CLCC1--CENPI	1	1	CLCC1	6501	chr1:109486097:-	CENPI	38609	chrX:100417822:+	ONLY_REF_SPLICE	YES	88	72	0.02	0.03	0.0113	0.0113	CLCC1->chloride_channel_CLIC_like_1,chr1:109472130-109506111:-,CENPI->centromere_protein_I,chrX:100353178-100418670:+	NCIH522_LUNG	0.02	0.03	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000343
NCIH522_LUNG	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	42	80	0.05	0.02	0.0113	0.0113	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	NCIH522_LUNG	0.02	0.05	0.0226	FALSE	118	557	29	88	0	FALSE	ACH-000343
NCIH522_LUNG	DCHS2--PDGFC	1	1	DCHS2	3475	chr4:155410456:-	PDGFC	53925	chr4:157732169:-	ONLY_REF_SPLICE	NO	0	532	1	0	0.0113	0.0113	DCHS2->chr4:155153399-155412930:-,dachsous_cadherin-related_2,PDGFC->chr4:157681606-157892546:-,platelet_derived_growth_factor_C	NCIH522_LUNG	0	1	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000343
NCIH522_LUNG	DPYD--MIR137HG	1	1	DPYD	4686	chr1:98293670:-	MIR137HG	41427	chr1:98455125:-	ONLY_REF_SPLICE	YES	52	0	0.04	1	0.0113	0.0113	LOCAL_REARRANGEMENT:-:[66951],DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,MIR137HG->MIR137_host_gene,chr1:98453556-98515419:-	NCIH522_LUNG	0.04	1	0.0226	TRUE	0	0	0	2	0	TRUE	ACH-000343
NCIH522_LUNG	ERBB4--IKZF2	1	1	ERBB4	1393	chr2:213403173:-	IKZF2	53783	chr2:213921823:-	ONLY_REF_SPLICE	YES	121	14	0.02	0.12	0.0113	0.0113	{Klijn_CCL:Lung=1},ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-	NCIH522_LUNG	0.02	0.12	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000343
NCIH522_LUNG	ERBB4--IKZF2	1	1	ERBB4	1393	chr2:213403173:-	IKZF2	49357	chr2:214013368:-	ONLY_REF_SPLICE	YES	121	8	0.02	0.2	0.0113	0.0113	{Klijn_CCL:Lung=1},ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-	NCIH522_LUNG	0.02	0.2	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000343
NCIH522_LUNG	GCA--IFIH1	1	1	GCA	1556	chr2:163175905:+	IFIH1	21640	chr2:163144865:-	ONLY_REF_SPLICE	NO	0	11	1	0.15	0.0113	0.0113	LOCAL_INVERSION:+:-:[137],GCA->chr2:163175350-163228105:+,grancalcin,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	NCIH522_LUNG	0.15	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000343
NCIH522_LUNG	MINOS1--CAPZB	1	1	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	78	94	0.03	0.02	0.0113	0.0113	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	NCIH522_LUNG	0.02	0.03	0.0226	TRUE	2	7	0	21	0	FALSE	ACH-000343
NCIH522_LUNG	PLXND1--TMCC1	1	1	PLXND1	2490	chr3:129324172:-	TMCC1	48928	chr3:129373946:-	ONLY_REF_SPLICE	NO	92	86	0.02	0.02	0.0113	0.0113	Cosmic{samples=4,mutations=4,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[40974],PLXND1->chr3:129274018-129325661:-,plexin_D1,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	NCIH522_LUNG	0.02	0.02	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000343
NCIH522_LUNG	RPS6KB1--VMP1	1	1	RPS6KB1	7326	chr17:57992064:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	134	896	0.01	0	0.0113	0.0113	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH522_LUNG	0	0.01	0.0226	FALSE	0	8	0	9	5	FALSE	ACH-000343
NCIH522_LUNG	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	648	1	0	0.0113	0.0113	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	NCIH522_LUNG	0	1	0.0226	FALSE	0	59	0	125	0	FALSE	ACH-000343
NCIH522_LUNG	TRIT1--PPIE	1	1	TRIT1	1194	chr1:40348990:-	PPIE	32921	chr1:40228189:+	ONLY_REF_SPLICE	YES	241	5	0.01	0.29	0.0113	0.0113	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH522_LUNG	0.01	0.29	0.0226	FALSE	0	0	0	3	0	FALSE	ACH-000343
NCIH522_LUNG	VMP1--CLTC	1	1	VMP1	7938	chr17:57816308:+	CLTC	44795	chr17:57758273:+	ONLY_REF_SPLICE	NO	547	749	0	0	0.0113	0.0113	{Klijn_CCL:Lung=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[10882],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain	NCIH522_LUNG	0	0	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000343
OE21_OESOPHAGUS	MT-ND6--MT-TE	282	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.8618	0.071	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	2.9328	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TN	139	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4106	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OE21_OESOPHAGUS	1	1	1.4106	FALSE	369	2501	205	193	0	FALSE	ACH-000544
OE21_OESOPHAGUS	DNAJC13--UBA5	102	6	DNAJC13	1235	chr3:132136604:+	UBA5	62414	chr3:132384667:+	ONLY_REF_SPLICE	YES	2	30	0.98	0.78	1.0351	0.0609	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,UBA5->chr3:132373290-132396941:+,ubiquitin_like_modifier_activating_enzyme_5	OE21_OESOPHAGUS	0.78	0.98	1.096	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TC	94	13	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9539	0.1319	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE21_OESOPHAGUS	1	1	1.0858	FALSE	462	80	0	856	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	90	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9133	0.071	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	0.9843	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	78	44	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	14	0	0.9	1	0.7916	0.4465	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	0.9	1	1.2381	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	53	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5378	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	0.5378	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TN	24	96	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2436	0.9742	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OE21_OESOPHAGUS	1	1	1.2178	FALSE	369	2501	205	193	0	FALSE	ACH-000544
OE21_OESOPHAGUS	TIMM23B--LINC00843	43	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4364	0.1522	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OE21_OESOPHAGUS	1	1	0.5886	TRUE	508	994	45	981	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	27	66	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	14	0	0.87	1	0.274	0.6698	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	0.87	1	0.9438	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TN	22	70	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2233	0.7104	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OE21_OESOPHAGUS	1	1	0.9337	FALSE	369	2501	205	193	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TN--MT-TC	22	62	MT-TN	1099	chrM:5631:-	MT-TC	4084	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2233	0.6292	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[32],MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE21_OESOPHAGUS	1	1	0.8525	FALSE	79	55	2	2	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	24	49	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2436	0.4973	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	0.7409	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TN	26	31	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2639	0.3146	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OE21_OESOPHAGUS	1	1	0.5785	FALSE	369	2501	205	193	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	4	111	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	1.1264	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	1.167	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TN	31	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3146	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OE21_OESOPHAGUS	1	1	0.3146	FALSE	369	2501	205	193	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TN--MT-TC	21	36	MT-TN	1131	chrM:5599:-	MT-TC	4100	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2131	0.3653	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[32],MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE21_OESOPHAGUS	1	1	0.5784	FALSE	79	55	2	2	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	3	106	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	5	0	0.96	1	0.0304	1.0757	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	0.96	1	1.1061	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	3	106	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.0304	1.0757	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	0.97	1	1.1061	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TC	29	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2943	0.0101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE21_OESOPHAGUS	1	1	0.3044	FALSE	462	80	0	856	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TN	20	33	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.203	0.3349	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OE21_OESOPHAGUS	1	1	0.5379	FALSE	369	2501	205	193	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TN	14	53	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1421	0.5378	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OE21_OESOPHAGUS	1	1	0.6799	FALSE	369	2501	205	193	0	FALSE	ACH-000544
OE21_OESOPHAGUS	TIMM23--RP11-464F9.1	27	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	233	6	0.11	0.82	0.274	0.0101	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OE21_OESOPHAGUS	0.11	0.82	0.2841	TRUE	519	3926	326	965	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TC	22	16	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2233	0.1624	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE21_OESOPHAGUS	1	1	0.3857	FALSE	462	80	0	856	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TR--MT-ND3	7	73	MT-TR	1067	chrM:10471:+	MT-ND3	4297	chrM:10290:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.071	0.7408	LOCAL_REARRANGEMENT:+:[1],MT-TR->chrM:10405-10469:+,mitochondrially_encoded_tRNA_arginine,MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3	OE21_OESOPHAGUS	1	1	0.8118	FALSE	0	2	0	3	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	25	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2537	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	0.2537	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	C15orf57--CBX3	21	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	28	20	0.52	0.6	0.2131	0.0913	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OE21_OESOPHAGUS	0.52	0.6	0.3044	TRUE	267	562	48	632	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP5-857K21.11--MTATP6P1	14	37	RP5-857K21.11	1220	chr1:569975:+	MTATP6P1	4835	chr1:569363:+	INCL_NON_REF_SPLICE	YES	165	152	0.24	0.25	0.1421	0.3755	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OE21_OESOPHAGUS	0.24	0.25	0.5176	TRUE	16	42	4	10	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TR--MT-ND3	5	72	MT-TR	1059	chrM:10463:+	MT-ND3	4289	chrM:10282:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0.7307	LOCAL_REARRANGEMENT:+:[1],MT-TR->chrM:10405-10469:+,mitochondrially_encoded_tRNA_arginine,MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3	OE21_OESOPHAGUS	1	1	0.7814	FALSE	0	2	0	3	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	6	67	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	206	0	0.26	1	0.0609	0.6799	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	0.26	1	0.7408	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND3--MT-TG	22	0	MT-ND3	1026	chrM:10084:+	MT-TG	4396	chrM:10040:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2233	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	OE21_OESOPHAGUS	1	1	0.2233	FALSE	97	9	0	14	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	5	67	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	13	0	0.85	1	0.0507	0.6799	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	0.85	1	0.7306	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	6	63	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	14	0	0.83	1	0.0609	0.6393	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	0.83	1	0.7002	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	4	65	MT-ND6	1162	chrM:14512:-	MT-TE	4552	chrM:14716:-	INCL_NON_REF_SPLICE	YES	11	0	0.86	1	0.0406	0.6596	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	0.86	1	0.7002	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	9	44	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	13	0	0.8	1	0.0913	0.4465	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	0.8	1	0.5378	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TN	20	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.203	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OE21_OESOPHAGUS	1	1	0.203	FALSE	369	2501	205	193	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	11	35	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1116	0.3552	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	0.4668	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TN	6	54	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0.548	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OE21_OESOPHAGUS	1	1	0.6089	FALSE	369	2501	205	193	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	9	41	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0913	0.4161	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	0.5074	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	7	47	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.071	0.477	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	0.548	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP5-857K21.11--MTATP6P1	6	51	RP5-857K21.11	1220	chr1:569975:+	MTATP6P1	4489	chr1:569017:+	INCL_NON_REF_SPLICE	NO	165	0	0.26	1	0.0609	0.5176	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OE21_OESOPHAGUS	0.26	1	0.5785	TRUE	16	42	4	10	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP11-6N13.1--CTD-2374C24.1	18	2	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1827	0.0203	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	OE21_OESOPHAGUS	0.95	1	0.203	TRUE	5	4	0	46	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	5	53	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	12	0	0.83	1	0.0507	0.5378	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	0.83	1	0.5885	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TN--MT-TC	18	0	MT-TN	1003	chrM:5727:-	MT-TC	4094	chrM:5806:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1827	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[32],MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE21_OESOPHAGUS	1	1	0.1827	FALSE	79	55	2	2	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TR--MT-ND3	4	53	MT-TR	1040	chrM:10444:+	MT-ND3	4225	chrM:10218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0.5378	LOCAL_REARRANGEMENT:+:[1],MT-TR->chrM:10405-10469:+,mitochondrially_encoded_tRNA_arginine,MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3	OE21_OESOPHAGUS	1	1	0.5784	FALSE	0	2	0	3	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	4	51	MT-ND6	1126	chrM:14548:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.0406	0.5176	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	0.95	1	0.5582	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP11-123O10.4--GRIP1	16	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1624	0.0203	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OE21_OESOPHAGUS	1	1	0.1827	FALSE	416	2512	207	587	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP5-857K21.11--MTATP6P1	11	22	RP5-857K21.11	1090	chr1:569845:+	MTATP6P1	4851	chr1:569379:+	INCL_NON_REF_SPLICE	YES	3	141	0.92	0.19	0.1116	0.2233	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OE21_OESOPHAGUS	0.19	0.92	0.3349	TRUE	16	42	4	10	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	5	45	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	195	0	0.2	1	0.0507	0.4567	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	0.2	1	0.5074	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	16	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1624	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	0.1624	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	3	49	MT-ND6	1136	chrM:14538:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	5	0	0.91	1	0.0304	0.4973	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	0.91	1	0.5277	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	3	48	MT-ND6	1053	chrM:14621:-	MT-TE	4526	chrM:14742:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0.4871	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	0.5175	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	15	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1522	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	0.1522	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	3	47	MT-ND6	1049	chrM:14625:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0.477	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	0.5074	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND3--MT-TG	7	30	MT-ND3	1064	chrM:10122:+	MT-TG	4305	chrM:9949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.071	0.3044	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	OE21_OESOPHAGUS	1	1	0.3754	FALSE	97	9	0	14	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP5-857K21.11--MTATP6P1	4	37	RP5-857K21.11	1205	chr1:569960:+	MTATP6P1	4785	chr1:569313:+	INCL_NON_REF_SPLICE	YES	207	176	0.17	0.19	0.0406	0.3755	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OE21_OESOPHAGUS	0.17	0.19	0.4161	TRUE	16	42	4	10	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	7	24	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.071	0.2436	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	0.91	1	0.3146	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TN	13	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1319	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OE21_OESOPHAGUS	1	1	0.1319	FALSE	369	2501	205	193	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP5-857K21.11--MTATP6P1	13	0	RP5-857K21.11	1075	chr1:569830:+	MTATP6P1	5225	chr1:569753:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1319	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OE21_OESOPHAGUS	1	1	0.1319	TRUE	16	42	4	10	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TN--MT-TC	5	29	MT-TN	1023	chrM:5707:-	MT-TC	4083	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0.2943	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[32],MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE21_OESOPHAGUS	1	1	0.345	FALSE	79	55	2	2	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	5	25	MT-ND6	1198	chrM:14476:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	14	0	0.68	1	0.0507	0.2537	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	0.68	1	0.3044	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	11	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1116	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	0.1116	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP5-857K21.11--MTATP6P1	3	32	RP5-857K21.11	1205	chr1:569960:+	MTATP6P1	4942	chr1:569470:+	INCL_NON_REF_SPLICE	YES	207	174	0.14	0.17	0.0304	0.3247	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OE21_OESOPHAGUS	0.14	0.17	0.3551	TRUE	16	42	4	10	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP5-857K21.11--MTATP6P1	4	27	RP5-857K21.11	1136	chr1:569891:+	MTATP6P1	4972	chr1:569500:+	INCL_NON_REF_SPLICE	YES	314	203	0.09	0.13	0.0406	0.274	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OE21_OESOPHAGUS	0.09	0.13	0.3146	TRUE	16	42	4	10	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP5-857K21.11--MTATP6P1	6	19	RP5-857K21.11	1106	chr1:569861:+	MTATP6P1	5190	chr1:569718:+	INCL_NON_REF_SPLICE	YES	8	5	0.76	0.83	0.0609	0.1928	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OE21_OESOPHAGUS	0.76	0.83	0.2537	TRUE	16	42	4	10	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP5-857K21.11--MTATP6P1	4	26	RP5-857K21.11	1107	chr1:569862:+	MTATP6P1	4840	chr1:569368:+	INCL_NON_REF_SPLICE	YES	10	151	0.75	0.17	0.0406	0.2639	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OE21_OESOPHAGUS	0.17	0.75	0.3045	TRUE	16	42	4	10	0	FALSE	ACH-000544
OE21_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	9	5	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0913	0.0507	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	OE21_OESOPHAGUS	0.88	1	0.142	FALSE	20	187	4	79	0	FALSE	ACH-000544
OE21_OESOPHAGUS	C15orf57--CBX3	9	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	27	20	0.33	0.39	0.0913	0.0406	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OE21_OESOPHAGUS	0.33	0.39	0.1319	TRUE	267	562	48	632	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TC	6	16	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0.1624	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE21_OESOPHAGUS	1	1	0.2233	FALSE	462	80	0	856	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	9	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0913	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	0.0913	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TW--MT-ND2	8	4	MT-TW	1010	chrM:5521:+	MT-ND2	5017	chrM:5418:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0812	0.0406	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OE21_OESOPHAGUS	1	1	0.1218	FALSE	14	0	0	19	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TC	4	17	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0.1725	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE21_OESOPHAGUS	1	1	0.2131	FALSE	462	80	0	856	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TN	8	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0812	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OE21_OESOPHAGUS	1	1	0.0812	FALSE	369	2501	205	193	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP5-857K21.11--MTATP6P1	3	19	RP5-857K21.11	1105	chr1:569860:+	MTATP6P1	5191	chr1:569719:+	INCL_NON_REF_SPLICE	YES	7	5	0.76	0.81	0.0304	0.1928	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OE21_OESOPHAGUS	0.76	0.81	0.2232	TRUE	16	42	4	10	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	3	18	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	10	0	0.68	1	0.0304	0.1827	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	0.68	1	0.2131	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TC	4	13	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0.1319	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE21_OESOPHAGUS	1	1	0.1725	FALSE	462	80	0	856	0	FALSE	ACH-000544
OE21_OESOPHAGUS	ZCWPW1--MYH16	7	1	ZCWPW1	2532	chr7:100022653:-	MYH16	28431	chr7:98853205:+	ONLY_REF_SPLICE	YES	34	0	0.19	1	0.071	0.0101	ZCWPW1->chr7:99998449-100026615:-,zinc_finger_CW-type_and_PWWP_domain_containing_1,MYH16->chr7:98836417-98908753:+,myosin,_heavy_chain_16_pseudogene	OE21_OESOPHAGUS	0.19	1	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TC	3	16	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0.1624	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE21_OESOPHAGUS	1	1	0.1928	FALSE	462	80	0	856	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TC	3	16	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0.1624	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE21_OESOPHAGUS	1	1	0.1928	FALSE	462	80	0	856	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TN	7	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.071	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OE21_OESOPHAGUS	1	1	0.071	FALSE	369	2501	205	193	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP5-857K21.11--MTATP6P1	4	10	RP5-857K21.11	1184	chr1:569939:+	MTATP6P1	5214	chr1:569742:+	INCL_NON_REF_SPLICE	YES	244	1	0.05	0.93	0.0406	0.1015	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OE21_OESOPHAGUS	0.05	0.93	0.1421	TRUE	16	42	4	10	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	6	0	MT-ND6	1031	chrM:14643:-	MT-TE	4590	chrM:14678:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	0.0609	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP5-857K21.11--MTATP6P1	3	12	RP5-857K21.11	1072	chr1:569827:+	MTATP6P1	4797	chr1:569325:+	INCL_NON_REF_SPLICE	YES	1	168	0.94	0.08	0.0304	0.1218	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OE21_OESOPHAGUS	0.08	0.94	0.1522	TRUE	16	42	4	10	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND3--MT-TG	4	7	MT-ND3	1287	chrM:10345:+	MT-TG	4399	chrM:10043:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0.071	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	OE21_OESOPHAGUS	1	1	0.1116	FALSE	97	9	0	14	0	FALSE	ACH-000544
OE21_OESOPHAGUS	FADS2--FOLR3	5	2	FADS2	1049	chr11:61560500:+	FOLR3	29175	chr11:71846993:+	ONLY_REF_SPLICE	YES	0	11	1	0.39	0.0507	0.0203	FADS2->chr11:61560452-61634826:+,fatty_acid_desaturase_2,FOLR3->chr11:71825915-71850936:+,folate_receptor_3_(gamma)	OE21_OESOPHAGUS	0.39	1	0.071	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	NDUFA4--PHF14	5	2	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	950	62	0.01	0.1	0.0507	0.0203	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	OE21_OESOPHAGUS	0.01	0.1	0.071	FALSE	19	32	3	60	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TW--MT-ND2	4	5	MT-TW	1005	chrM:5516:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	97	1	0.08	0.0406	0.0507	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OE21_OESOPHAGUS	0.08	1	0.0913	FALSE	14	0	0	19	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	3	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.0304	0.0812	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OE21_OESOPHAGUS	0.85	1	0.1116	FALSE	275	511	55	178	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP5-857K21.11--MTATP6P1	5	0	RP5-857K21.11	1028	chr1:569783:+	MTATP6P1	5197	chr1:569725:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OE21_OESOPHAGUS	1	1	0.0507	TRUE	16	42	4	10	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MIR205HG--C9orf3	4	1	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	479	390	0.01	0.01	0.0406	0.0101	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	OE21_OESOPHAGUS	0.01	0.01	0.0507	FALSE	86	303	14	25	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TW--MT-ND2	3	5	MT-TW	1004	chrM:5515:+	MT-ND2	4881	chrM:5282:+	INCL_NON_REF_SPLICE	YES	0	97	1	0.08	0.0304	0.0507	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OE21_OESOPHAGUS	0.08	1	0.0811	FALSE	14	0	0	19	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0304	0.0507	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OE21_OESOPHAGUS	0.8	1	0.0811	FALSE	515	4851	409	746	0	FALSE	ACH-000544
OE21_OESOPHAGUS	C15orf57--CBX3	3	4	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	27	20	0.21	0.26	0.0304	0.0406	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OE21_OESOPHAGUS	0.21	0.26	0.071	TRUE	267	562	48	632	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	4	0	MT-ND6	1014	chrM:14660:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	0.0406	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TN	4	0	MT-TA	1067	chrM:5589:-	MT-TN	4133	chrM:5666:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OE21_OESOPHAGUS	1	1	0.0406	FALSE	369	2501	205	193	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	OE21_OESOPHAGUS	1	1	0.0406	TRUE	465	1949	224	605	0	FALSE	ACH-000544
OE21_OESOPHAGUS	EGFR--SEC61G	3	1	EGFR	1345	chr7:55087058:+	SEC61G	47208	chr7:54825287:-	ONLY_REF_SPLICE	YES	323	119	0.01	0.03	0.0304	0.0101	EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,SEC61G->Sec61_translocon_gamma_subunit,chr7:54819943-54827667:-	OE21_OESOPHAGUS	0.01	0.03	0.0405	FALSE	1	5	0	2	4	FALSE	ACH-000544
OE21_OESOPHAGUS	RP11-6N13.1--CTD-2374C24.1	3	1	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0304	0.0101	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	OE21_OESOPHAGUS	0.8	1	0.0405	TRUE	5	12	0	42	0	FALSE	ACH-000544
OE21_OESOPHAGUS	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	OE21_OESOPHAGUS	1	1	0.0304	TRUE	0	42	0	133	42	FALSE	ACH-000544
OE21_OESOPHAGUS	MROH1--PRDX2	3	0	MROH1	18307	chr8:145278133:+	PRDX2	44575	chr19:12907980:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1,PRDX2->chr19:12907634-12912694:-,peroxiredoxin_2	OE21_OESOPHAGUS	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	MT-ND3--MT-TG	3	0	MT-ND3	1075	chrM:10133:+	MT-TG	4403	chrM:10047:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	OE21_OESOPHAGUS	1	1	0.0304	FALSE	97	9	0	14	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND3--MT-TG	3	0	MT-ND3	1063	chrM:10121:+	MT-TG	4390	chrM:10034:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	OE21_OESOPHAGUS	1	1	0.0304	FALSE	97	9	0	14	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-ND6--MT-TE	3	0	MT-ND6	1002	chrM:14672:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE21_OESOPHAGUS	1	1	0.0304	FALSE	499	1288	110	792	0	FALSE	ACH-000544
OE21_OESOPHAGUS	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OE21_OESOPHAGUS	1	1	0.0304	FALSE	369	2501	205	193	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP11-640M9.1--SEC22B	3	0	RP11-640M9.1	3158	chr1:144519813:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	OE21_OESOPHAGUS	1	1	0.0304	TRUE	20	16	6	14	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP5-857K21.11--MTATP6P1	3	0	RP5-857K21.11	1020	chr1:569775:+	MTATP6P1	5116	chr1:569644:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OE21_OESOPHAGUS	1	1	0.0304	TRUE	16	42	4	10	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP5-857K21.11--MTATP6P1	3	0	RP5-857K21.11	1020	chr1:569775:+	MTATP6P1	4996	chr1:569524:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OE21_OESOPHAGUS	1	1	0.0304	TRUE	16	42	4	10	0	FALSE	ACH-000544
OE21_OESOPHAGUS	RP5-857K21.11--MTATP6P1	3	0	RP5-857K21.11	1020	chr1:569775:+	MTATP6P1	4992	chr1:569520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OE21_OESOPHAGUS	1	1	0.0304	TRUE	16	42	4	10	0	FALSE	ACH-000544
OE21_OESOPHAGUS	TRPC4AP--CTD-2315E11.1	3	0	TRPC4AP	4562	chr20:33645317:-	CTD-2315E11.1	26721	chr15:90676629:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0304	0	TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,CTD-2315E11.1->chr15:90645881-90676674:+	OE21_OESOPHAGUS	1	1	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	2	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0203	0.0304	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	OE21_OESOPHAGUS	0.71	1	0.0507	FALSE	33	240	4	98	0	FALSE	ACH-000544
OE21_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	1	5	CTD-2008L17.1	3828	chr18:53685010:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0101	0.0507	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	OE21_OESOPHAGUS	1	1	0.0608	FALSE	1	24	0	14	0	FALSE	ACH-000544
OE21_OESOPHAGUS	DNAJC13--UBA5	2	1	DNAJC13	1235	chr3:132136604:+	UBA5	65303	chr3:132387662:+	ONLY_REF_SPLICE	YES	2	62	0.6	0.05	0.0203	0.0101	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,UBA5->chr3:132373290-132396941:+,ubiquitin_like_modifier_activating_enzyme_5	OE21_OESOPHAGUS	0.05	0.6	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0101	0.0507	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OE21_OESOPHAGUS	1	1	0.0608	FALSE	467	2173	244	435	0	FALSE	ACH-000544
OE21_OESOPHAGUS	C10orf88--WDR11	2	0	C10orf88	3450	chr10:124711470:-	WDR11	16180	chr10:122618155:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	C10orf88->chr10:124690419-124713919:-,chromosome_10_open_reading_frame_88,WDR11->Oncogene{Bushman},WD_repeat_domain_11,chr10:122610687-122669036:+	OE21_OESOPHAGUS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	DNAJC13--UBA5	1	4	DNAJC13	1235	chr3:132136604:+	UBA5	62575	chr3:132384828:+	ONLY_REF_SPLICE	YES	2	39	0.71	0.11	0.0101	0.0406	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,UBA5->chr3:132373290-132396941:+,ubiquitin_like_modifier_activating_enzyme_5	OE21_OESOPHAGUS	0.11	0.71	0.0507	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	KCNN4--IQCG	2	0	KCNN4	1555	chr19:44284855:-	IQCG	29696	chr3:197619630:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	KCNN4->chr19:44270685-44285409:-,potassium_calcium-activated_channel_subfamily_N_member_4,IQCG->IQ_motif_containing_G,chr3:197615946-197687013:-	OE21_OESOPHAGUS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	KHDC1--NEMF	2	0	KHDC1	1814	chr6:74019275:-	NEMF	39517	chr14:50256061:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	KHDC1->KH_homology_domain_containing_1,chr6:73951037-74020088:-,NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor	OE21_OESOPHAGUS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	MSRB2--SERPINB1	2	0	MSRB2	3399	chr10:23399247:+	SERPINB1	14069	chr6:2838233:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	MSRB2->chr10:23384435-23410942:+,methionine_sulfoxide_reductase_B2,SERPINB1->Oncogene{Bushman},chr6:2832566-2842240:-,serpin_family_B_member_1	OE21_OESOPHAGUS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	RP11-286N22.8--KIAA1432	2	0	RP11-286N22.8	4750	chr11:61213703:+	KIAA1432	29295	chr9:5754841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	RP11-286N22.8->chr11:61196692-61253294:+,KIAA1432->chr9:5629025-5776557:+	OE21_OESOPHAGUS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	SNHG6--CSPP1	2	0	SNHG6	1962	chr8:67837672:-	CSPP1	38622	chr8:68087531:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	SNHG6->chr8:67833919-67838633:-,small_nucleolar_RNA_host_gene_6,CSPP1->centrosome_and_spindle_pole_associated_protein_1,chr8:67974661-68108498:+	OE21_OESOPHAGUS	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	NDUFA4--PHF14	1	2	NDUFA4	2449	chr7:10978435:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	1628	62	0	0.05	0.0101	0.0203	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	OE21_OESOPHAGUS	0	0.05	0.0304	FALSE	0	0	0	1	0	FALSE	ACH-000544
OE21_OESOPHAGUS	AP000487.5--YWHAE	1	1	AP000487.5	1391	chr11:70244204:-	YWHAE	13533	chr17:1268352:-	ONLY_REF_SPLICE	YES	8	1485	0.2	0	0.0101	0.0101	AP000487.5->chr11:70218352-70244594:-,YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon	OE21_OESOPHAGUS	0	0.2	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000544
OE21_OESOPHAGUS	BSG--ANXA2	1	1	BSG	1283	chr19:571579:+	ANXA2	30225	chr15:60656722:-	ONLY_REF_SPLICE	NO	0	2445	1	0	0.0101	0.0101	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	OE21_OESOPHAGUS	0	1	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000544
OE21_OESOPHAGUS	FAM35A--PRR4	1	1	FAM35A	11831	chr10:88946957:+	PRR4	33400	chr12:11001006:-	ONLY_REF_SPLICE	YES	45	9	0.04	0.18	0.0101	0.0101	FAM35A->chr10:88853918-88951225:+,family_with_sequence_similarity_35_member_A,PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal)	OE21_OESOPHAGUS	0.04	0.18	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000544
OE21_OESOPHAGUS	LATS2--MIPEP	1	1	LATS2	3909	chr13:21619824:-	MIPEP	34481	chr13:24410488:-	ONLY_REF_SPLICE	YES	7	73	0.22	0.03	0.0101	0.0101	LATS2->Oncogene{Bushman},chr13:21547171-21635686:-,large_tumor_suppressor_kinase_2,MIPEP->chr13:24304328-24463558:-,mitochondrial_intermediate_peptidase	OE21_OESOPHAGUS	0.03	0.22	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000544
OE21_OESOPHAGUS	LYPLAL1--RRP15	1	1	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	NO	108	236	0.02	0.01	0.0101	0.0101	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	OE21_OESOPHAGUS	0.01	0.02	0.0202	FALSE	0	12	0	13	2	FALSE	ACH-000544
OE21_OESOPHAGUS	MB21D2--FGF12	1	1	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	7	6	0.22	0.25	0.0101	0.0101	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	OE21_OESOPHAGUS	0.22	0.25	0.0202	FALSE	0	17	0	46	0	FALSE	ACH-000544
OE21_OESOPHAGUS	PDE4D--EEF1D	1	1	PDE4D	2227	chr5:59783769:-	EEF1D	69626	chr8:144669022:-	ONLY_REF_SPLICE	YES	2	233	0.5	0.01	0.0101	0.0101	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	OE21_OESOPHAGUS	0.01	0.5	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000544
DKMG_CENTRAL_NERVOUS_SYSTEM	TFG--GPR128	158	115	TFG	5019	chr3:100438902:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	280	0	0.49	1	2.1981	1.5998	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	DKMG_CENTRAL_NERVOUS_SYSTEM	0.49	1	3.7979	TRUE	12	123	7	17	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	SEC61G--RP11-436F9.1	48	69	SEC61G	4140	chr7:54823472:-	RP11-436F9.1	10421	chr7:54414987:+	ONLY_REF_SPLICE	YES	2275	0	0.05	1	0.6678	0.9599	SEC61G->Sec61_translocon_gamma_subunit,chr7:54819943-54827667:-,RP11-436F9.1->chr7:54398390-54417542:+	DKMG_CENTRAL_NERVOUS_SYSTEM	0.05	1	1.6277	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	36	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5008	0.0278	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.5286	FALSE	462	80	0	856	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	26	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3617	0.1948	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.5565	TRUE	508	994	45	981	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	COL1A2--FN1	6	73	COL1A2	23728	chr7:94051247:+	FN1	36441	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	17347	4049	0	0.02	0.0835	1.0156	GTEx&tcga_normals:10/3694=0.27%,GTEx:0.03%,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	DKMG_CENTRAL_NERVOUS_SYSTEM	0	0.02	1.0991	TRUE	0	0	0	3	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	ZNF33A--LINC00839	20	2	ZNF33A	3703	chr10:38306314:+	LINC00839	18319	chr10:42982427:+	ONLY_REF_SPLICE	YES	11	0	0.67	1	0.2782	0.0278	ZNF33A->chr10:38299578-38354016:+,zinc_finger_protein_33A,LINC00839->chr10:42970991-42990784:+,long_intergenic_non-protein_coding_RNA_839	DKMG_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.306	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	SEC61G--SLC25A5P3	15	17	SEC61G	4140	chr7:54823472:-	SLC25A5P3	9306	chr7:54487144:+	INCL_NON_REF_SPLICE	YES	2275	0	0.01	1	0.2087	0.2365	SEC61G->Sec61_translocon_gamma_subunit,chr7:54819943-54827667:-,SLC25A5P3->chr7:54487137-54488021:+,solute_carrier_family_25_member_5_pseudogene_3	DKMG_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.4452	TRUE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	SEC61G--SLC25A5P3	14	7	SEC61G	4140	chr7:54823472:-	SLC25A5P3	9840	chr7:54487678:+	INCL_NON_REF_SPLICE	YES	2275	130	0.01	0.14	0.1948	0.0974	SEC61G->Sec61_translocon_gamma_subunit,chr7:54819943-54827667:-,SLC25A5P3->chr7:54487137-54488021:+,solute_carrier_family_25_member_5_pseudogene_3	DKMG_CENTRAL_NERVOUS_SYSTEM	0.01	0.14	0.2922	TRUE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	15	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.2087	0.0278	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DKMG_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.2365	FALSE	499	1288	110	792	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	COL6A2--COL1A2	13	9	COL6A2	9885	chr21:47538959:+	COL1A2	29530	chr7:94033902:+	INCL_NON_REF_SPLICE	NO	3836	12196	0.01	0	0.1809	0.1252	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},HGNC_GENEFAM,PROTCLUST,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	DKMG_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.3061	FALSE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	14	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	148	1	0.11	0.95	0.1948	0.0696	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DKMG_CENTRAL_NERVOUS_SYSTEM	0.11	0.95	0.2644	TRUE	519	3926	326	965	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	SEC61G--RP11-436F9.1	5	40	SEC61G	3037	chr7:54825188:-	RP11-436F9.1	10421	chr7:54414987:+	ONLY_REF_SPLICE	YES	3194	0	0.01	1	0.0696	0.5565	SEC61G->Sec61_translocon_gamma_subunit,chr7:54819943-54827667:-,RP11-436F9.1->chr7:54398390-54417542:+	DKMG_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.6261	TRUE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	COL6A3--COL1A2	13	5	COL6A3	31127	chr2:238261204:-	COL1A2	84752	chr7:94055778:+	INCL_NON_REF_SPLICE	NO	1621	13847	0.01	0	0.1809	0.0696	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	DKMG_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.2505	FALSE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	CHSY3--HSPA8P4	11	11	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	70	1	0.24	0.96	0.153	0.153	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	DKMG_CENTRAL_NERVOUS_SYSTEM	0.24	0.96	0.306	FALSE	89	26	1	44	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	12	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1669	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.1669	FALSE	499	1288	110	792	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	COL1A2--FN1	4	31	COL1A2	22060	chr7:94049579:+	FN1	75478	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	14892	7695	0	0	0.0556	0.4313	GTEx&tcga_normals:10/3694=0.27%,GTEx:0.03%,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	DKMG_CENTRAL_NERVOUS_SYSTEM	0	0	0.4869	TRUE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	COL6A3--COL1A2	6	9	COL6A3	31120	chr2:238261211:-	COL1A2	76829	chr7:94047855:+	INCL_NON_REF_SPLICE	NO	1631	12239	0.01	0	0.0835	0.1252	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	DKMG_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.2087	FALSE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	LPP--TPRG1	7	5	LPP	8828	chr3:188059507:+	TPRG1	58645	chr3:188741539:+	ONLY_REF_SPLICE	YES	6	0	0.67	1	0.0974	0.0696	GTEx&tcga_normals:2/3694=0.05%,NEIGHBORS[56543],LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1	DKMG_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.167	FALSE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	7	5	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0974	0.0696	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.167	TRUE	254	575	65	124	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	7	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0974	0.0278	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.1252	FALSE	462	80	0	856	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	NIPA2--POLA1	7	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0974	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0974	TRUE	46	1352	75	139	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	COL6A2--COL1A2	4	10	COL6A2	14795	chr21:47544582:+	COL1A2	46162	chr7:94051211:+	INCL_NON_REF_SPLICE	YES	4657	16663	0	0	0.0556	0.1391	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},HGNC_GENEFAM,PROTCLUST,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	DKMG_CENTRAL_NERVOUS_SYSTEM	0	0	0.1947	TRUE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	COL6A3--COL1A2	3	13	COL6A3	31122	chr2:238261209:-	COL1A2	63812	chr7:94034161:+	INCL_NON_REF_SPLICE	NO	1640	10849	0.01	0	0.0417	0.1809	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	DKMG_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.2226	FALSE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	6	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0835	0.0139	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DKMG_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.0974	FALSE	499	1288	110	792	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	4	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	42	19	0.21	0.37	0.0556	0.0974	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DKMG_CENTRAL_NERVOUS_SYSTEM	0.21	0.37	0.153	TRUE	267	562	48	632	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	COL1A2--FN1	3	11	COL1A2	11283	chr7:94038668:+	FN1	75478	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	14220	7695	0	0	0.0417	0.153	GTEx&tcga_normals:10/3694=0.27%,GTEx:0.03%,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	DKMG_CENTRAL_NERVOUS_SYSTEM	0	0	0.1947	TRUE	0	0	0	2	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	COL1A2--FN1	3	10	COL1A2	11287	chr7:94038672:+	FN1	75490	chr2:216239969:-	INCL_NON_REF_SPLICE	YES	14324	7799	0	0	0.0417	0.1391	GTEx&tcga_normals:10/3694=0.27%,GTEx:0.03%,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	DKMG_CENTRAL_NERVOUS_SYSTEM	0	0	0.1808	TRUE	0	0	0	2	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	COL6A3--COL1A2	3	10	COL6A3	31127	chr2:238261204:-	COL1A2	76827	chr7:94047853:+	INCL_NON_REF_SPLICE	NO	1621	12235	0.01	0	0.0417	0.1391	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	DKMG_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.1808	FALSE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	5	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0696	0.0278	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0974	FALSE	462	80	0	856	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	4	5	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	22	0	0.29	1	0.0556	0.0696	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	DKMG_CENTRAL_NERVOUS_SYSTEM	0.29	1	0.1252	FALSE	21	45	1	60	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	CALR--SHC1	5	0	CALR	4859	chr19:13054575:+	SHC1	14801	chr1:154938961:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0696	0	CALR->calreticulin,chr19:13049392-13055303:+,SHC1->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_transforming_protein_1,chr1:154934774-154946871:-	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	COL6A2--COL1A2	2	12	COL6A2	14840	chr21:47544627:+	COL1A2	47220	chr7:94052269:+	ONLY_REF_SPLICE	YES	4735	18029	0	0	0.0278	0.1669	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},HGNC_GENEFAM,PROTCLUST,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	DKMG_CENTRAL_NERVOUS_SYSTEM	0	0	0.1947	TRUE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	ERCC1--PAMR1	5	0	ERCC1	2178	chr19:45953899:-	PAMR1	29828	chr11:35489656:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0696	0	ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1,PAMR1->chr11:35453370-35551848:-,peptidase_domain_containing_associated_with_muscle_regeneration_1	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0696	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0696	FALSE	462	80	0	856	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	FLYWCH1--RP11-196G11.1	4	3	FLYWCH1	3353	chr16:2964290:+	RP11-196G11.1	26586	chr16:31102663:-	ONLY_REF_SPLICE	YES	96	654	0.07	0.01	0.0556	0.0417	FLYWCH1->FLYWCH-type_zinc_finger_1,chr16:2961938-3001209:+,RP11-196G11.1->chr16:31094760-31106277:-	DKMG_CENTRAL_NERVOUS_SYSTEM	0.01	0.07	0.0973	FALSE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	COL6A2--COL1A2	1	14	COL6A2	14840	chr21:47544627:+	COL1A2	38619	chr7:94043534:+	ONLY_REF_SPLICE	YES	4735	15283	0	0	0.0139	0.1948	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},HGNC_GENEFAM,PROTCLUST,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	DKMG_CENTRAL_NERVOUS_SYSTEM	0	0	0.2087	TRUE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	NUP107--IL22	4	2	NUP107	5788	chr12:69085892:+	IL22	31718	chr12:68647274:-	ONLY_REF_SPLICE	YES	28	2	0.18	0.75	0.0556	0.0278	NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa,IL22->Oncogene{Bushman},chr12:68642022-68647387:-,interleukin_22	DKMG_CENTRAL_NERVOUS_SYSTEM	0.18	0.75	0.0834	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	COL6A2--COL1A2	4	1	COL6A2	3186	chr21:47531462:+	COL1A2	23824	chr7:94024226:+	INCL_NON_REF_SPLICE	YES	3085	67	0	0.07	0.0556	0.0139	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},HGNC_GENEFAM,PROTCLUST,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	DKMG_CENTRAL_NERVOUS_SYSTEM	0	0.07	0.0695	FALSE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	9	1	0.36	0.0556	0.0139	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DKMG_CENTRAL_NERVOUS_SYSTEM	0.36	1	0.0695	TRUE	465	1949	224	605	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	COL6A2--COL1A2	1	12	COL6A2	12458	chr21:47541532:+	COL1A2	33719	chr7:94038634:+	ONLY_REF_SPLICE	NO	4762	13651	0	0	0.0139	0.1669	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},HGNC_GENEFAM,PROTCLUST,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	DKMG_CENTRAL_NERVOUS_SYSTEM	0	0	0.1808	TRUE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	BRIP1--ORMDL3	3	3	BRIP1	22032	chr17:59793312:-	ORMDL3	35392	chr17:38080478:-	ONLY_REF_SPLICE	YES	2	42	0.75	0.12	0.0417	0.0417	BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-,ORMDL3->ORMDL_sphingolipid_biosynthesis_regulator_3,chr17:38077294-38083854:-	DKMG_CENTRAL_NERVOUS_SYSTEM	0.12	0.75	0.0834	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	3	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0417	0.0417	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DKMG_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0834	FALSE	499	1288	110	792	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	3	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0.0417	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0834	TRUE	458	1351	185	561	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	3	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	49	0	0.08	1	0.0417	0.0139	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	DKMG_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.0556	FALSE	56	216	12	147	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	XXyac-YX155B6.6--HYDIN	2	3	XXyac-YX155B6.6	8884	chr1:147668236:-	HYDIN	22289	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0.0417	GTEx_FI:{Brain=[count:3=pct:0.5]},XXyac-YX155B6.6->chr1:147635066-147700929:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0695	TRUE	3	1	0	4	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	EGFR--NUP107	2	2	EGFR	26499	chr7:55249171:+	NUP107	52224	chr12:69094506:+	ONLY_REF_SPLICE	YES	193	26	0.02	0.13	0.0278	0.0278	EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa	DKMG_CENTRAL_NERVOUS_SYSTEM	0.02	0.13	0.0556	TRUE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	EGFR--NUP107	2	2	EGFR	25313	chr7:55242513:+	NUP107	52224	chr12:69094506:+	ONLY_REF_SPLICE	YES	193	26	0.02	0.13	0.0278	0.0278	EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa	DKMG_CENTRAL_NERVOUS_SYSTEM	0.02	0.13	0.0556	TRUE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	MED12L--MBNL1	2	2	MED12L	17641	chr3:150911453:+	MBNL1	68906	chr3:152132730:+	ONLY_REF_SPLICE	YES	0	143	1	0.03	0.0278	0.0278	MED12L->chr3:150803484-151154860:+,mediator_complex_subunit_12_like,MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1	DKMG_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0556	TRUE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	COL6A2--COL1A2	1	4	COL6A2	9959	chr21:47539033:+	COL1A2	37480	chr7:94042395:+	ONLY_REF_SPLICE	NO	4295	14559	0	0	0.0139	0.0556	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_Transformed_fibroblasts=2},HGNC_GENEFAM,PROTCLUST,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	DKMG_CENTRAL_NERVOUS_SYSTEM	0	0	0.0695	FALSE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	FLYWCH1--RP11-196G11.1	2	0	FLYWCH1	4540	chr16:2965477:+	RP11-196G11.1	27837	chr16:31099147:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	FLYWCH1->FLYWCH-type_zinc_finger_1,chr16:2961938-3001209:+,RP11-196G11.1->chr16:31094760-31106277:-	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	MDM2--NUP107	2	0	MDM2	3198	chr12:69207408:+	NUP107	31532	chr12:69103018:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	LOCAL_REARRANGEMENT:+:[65171],MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	STIM1--RHOG	2	0	STIM1	2883	chr11:3877639:+	RHOG	36330	chr11:3849436:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[13544],STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1,RHOG->Oncogene{Bushman},chr11:3848208-3862213:-,ras_homolog_family_member_G	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	WIPF1--PMEPA1	2	0	WIPF1	1143	chr2:175547502:-	PMEPA1	35813	chr20:56234753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	WIPF1->WAS/WASL_interacting_protein_family_member_1,chr2:175424300-175547644:-,PMEPA1->Oncogene{Bushman},chr20:56223448-56286592:-,prostate_transmembrane_protein,_androgen_induced_1	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	YIPF6--RNF41	2	0	YIPF6	1835	chrX:67718999:+	RNF41	26236	chr12:56602082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,RNF41->chr12:56598285-56615717:-,ring_finger_protein_41	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	EGFR--RP11-745C15.2	1	3	EGFR	25313	chr7:55242513:+	RP11-745C15.2	47489	chr7:54872359:+	ONLY_REF_SPLICE	NO	193	0	0.02	1	0.0139	0.0417	EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,RP11-745C15.2->chr7:54827118-54872621:+	DKMG_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0556	TRUE	0	1	0	1	1	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	ARL15--NDUFS4	1	1	ARL15	5950	chr5:53409032:-	NDUFS4	18000	chr5:52942063:+	ONLY_REF_SPLICE	NO	20	221	0.09	0.01	0.0139	0.0139	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	DKMG_CENTRAL_NERVOUS_SYSTEM	0.01	0.09	0.0278	FALSE	5	61	2	9	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	BMS1P5--CEP164P1	1	1	BMS1P5	7859	chr10:48941194:-	CEP164P1	40425	chr10:45511616:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0139	0.0139	BMS1P5->BMS1,_ribosome_biogenesis_factor_pseudogene_5,chr10:48901102-48950972:-,CEP164P1->centrosomal_protein_164_pseudogene_1,chr10:45497670-45642669:-	DKMG_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	BRWD1--CHMP1A	1	1	BRWD1	4942	chr21:40670358:-	CHMP1A	61543	chr16:89713739:-	ONLY_REF_SPLICE	NO	9	91	0.18	0.02	0.0139	0.0139	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Heart_-_Left_Ventricle=1},BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	DKMG_CENTRAL_NERVOUS_SYSTEM	0.02	0.18	0.0278	TRUE	1	6	1	2	2	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	CREBZF--CHMP1A	1	1	CREBZF	4906	chr11:85373433:-	CHMP1A	15365	chr16:89713739:-	ONLY_REF_SPLICE	YES	94	91	0.02	0.02	0.0139	0.0139	GTEx_v2:{count=5;pct=0.06%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Cells_-_Transformed_fibroblasts=1},CREBZF->CREB/ATF_bZIP_transcription_factor,chr11:85370752-85393951:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	DKMG_CENTRAL_NERVOUS_SYSTEM	0.02	0.02	0.0278	TRUE	1	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	EGFR--NUP107	1	1	EGFR	26499	chr7:55249171:+	NUP107	71682	chr12:69135593:+	ONLY_REF_SPLICE	YES	193	47	0.01	0.04	0.0139	0.0139	EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa	DKMG_CENTRAL_NERVOUS_SYSTEM	0.01	0.04	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	ERCC1--PAMR1	1	1	ERCC1	3250	chr19:45952431:-	PAMR1	29828	chr11:35489656:-	ONLY_REF_SPLICE	NO	10	40	0.17	0.05	0.0139	0.0139	ERCC1->Oncogene{Bushman},chr19:45910591-45982086:-,excision_repair_cross-complementation_group_1,PAMR1->chr11:35453370-35551848:-,peptidase_domain_containing_associated_with_muscle_regeneration_1	DKMG_CENTRAL_NERVOUS_SYSTEM	0.05	0.17	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	LPP--TPRG1	1	1	LPP	8828	chr3:188059507:+	TPRG1	64663	chr3:188844846:+	ONLY_REF_SPLICE	YES	6	3	0.25	0.4	0.0139	0.0139	GTEx&tcga_normals:2/3694=0.05%,NEIGHBORS[56543],LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1	DKMG_CENTRAL_NERVOUS_SYSTEM	0.25	0.4	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	1	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	12129	chr12:78360009:+	ONLY_REF_SPLICE	YES	0	30	1	0.06	0.0139	0.0139	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	DKMG_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0278	TRUE	0	2	0	1	0	FALSE	ACH-000244
DKMG_CENTRAL_NERVOUS_SYSTEM	SGCG--WASF3	1	1	SGCG	7809	chr13:23853617:+	WASF3	15922	chr13:27187098:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0.0139	SGCG->chr13:23755091-23899304:+,sarcoglycan_gamma,WASF3->WAS_protein_family_member_3,chr13:27131840-27263085:+	DKMG_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000244
SNU423_LIVER	TIMM23B--LINC00843	64	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.831	0.1688	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU423_LIVER	0.99	1	0.9998	TRUE	508	994	45	981	0	FALSE	ACH-000493
SNU423_LIVER	LINC00152--AC093616.4	48	18	LINC00152	14196	chr2:87906288:+	AC093616.4	17233	chr2:88000503:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6232	0.2337	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	SNU423_LIVER	1	1	0.8569	FALSE	0	0	0	14	0	FALSE	ACH-000493
SNU423_LIVER	TIMM23--RP11-464F9.1	40	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5194	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU423_LIVER	1	1	0.5194	TRUE	519	3926	326	965	0	FALSE	ACH-000493
SNU423_LIVER	RP11-123O10.4--GRIP1	17	10	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.2207	0.1298	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU423_LIVER	0.96	1	0.3505	FALSE	416	2512	207	587	0	FALSE	ACH-000493
SNU423_LIVER	ZNF654--HMGB2	12	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1558	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU423_LIVER	1	1	0.1558	TRUE	0	0	0	518	0	FALSE	ACH-000493
SNU423_LIVER	RP11-96H19.1--RP11-446N19.1	10	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.92	0.92	0.1298	0.013	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU423_LIVER	0.92	0.92	0.1428	FALSE	515	4851	409	746	0	FALSE	ACH-000493
SNU423_LIVER	RP11-96H19.1--RP11-446N19.1	9	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.1169	0.013	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU423_LIVER	0.91	1	0.1299	FALSE	407	2205	196	549	0	FALSE	ACH-000493
SNU423_LIVER	RP11-634B7.4--TRIM58	6	5	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	94	0.92	0.1	0.0779	0.0649	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	SNU423_LIVER	0.1	0.92	0.1428	TRUE	158	633	76	73	0	FALSE	ACH-000493
SNU423_LIVER	RPSAP52--HMGA2	6	3	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	1	788	0.9	0.01	0.0779	0.039	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SNU423_LIVER	0.01	0.9	0.1169	FALSE	0	59	0	125	0	FALSE	ACH-000493
SNU423_LIVER	RP11-680G10.1--GSE1	5	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	12	1	0.33	0.0649	0.013	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU423_LIVER	0.33	1	0.0779	TRUE	465	1949	224	605	0	FALSE	ACH-000493
SNU423_LIVER	SCARB1--UBC	5	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0649	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU423_LIVER	1	1	0.0649	TRUE	55	66	6	101	0	FALSE	ACH-000493
SNU423_LIVER	MYH9--MT2A	3	6	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	2262	9	0	0.5	0.039	0.0779	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SNU423_LIVER	0	0.5	0.1169	TRUE	0	0	0	24	0	FALSE	ACH-000493
SNU423_LIVER	XXbac-BPG252P9.9--TUBBP2	4	2	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	1536	0	0	1	0.0519	0.026	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SNU423_LIVER	0	1	0.0779	FALSE	0	1	0	48	1	FALSE	ACH-000493
SNU423_LIVER	PRR16--CTD-2334D19.1	3	5	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	25	1	0.24	0.89	0.039	0.0649	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SNU423_LIVER	0.24	0.89	0.1039	FALSE	21	45	1	60	0	FALSE	ACH-000493
SNU423_LIVER	RP11-6N13.1--CTD-2374C24.1	4	1	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0.013	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SNU423_LIVER	1	1	0.0649	TRUE	5	4	0	46	0	FALSE	ACH-000493
SNU423_LIVER	FLNA--MT-ATP6	4	0	FLNA	15648	chrX:153583018:-	MT-ATP6	25169	chrM:8921:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0	FLNA->chrX:153576892-153603006:-,filamin_A,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU423_LIVER	1	1	0.0519	FALSE	0	0	0	1	0	FALSE	ACH-000493
SNU423_LIVER	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU423_LIVER	1	1	0.0519	TRUE	0	0	0	434	0	FALSE	ACH-000493
SNU423_LIVER	SERPINE1--MT-ND4	4	0	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SNU423_LIVER	1	1	0.0519	FALSE	1	0	0	29	0	FALSE	ACH-000493
SNU423_LIVER	RP11-680G10.1--GSE1	3	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.67	0.039	0.039	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU423_LIVER	0.67	1	0.078	TRUE	458	1351	185	561	0	FALSE	ACH-000493
SNU423_LIVER	ZNF486--MYO1F	3	2	ZNF486	1133	chr19:20278169:+	MYO1F	30294	chr19:8595457:-	ONLY_REF_SPLICE	YES	15	0	0.25	1	0.039	0.026	ZNF486->chr19:20278037-20311299:+,zinc_finger_protein_486,MYO1F->chr19:8585674-8642461:-,myosin_IF	SNU423_LIVER	0.25	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000493
SNU423_LIVER	CTD-2337A12.1--CAST	3	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	66	1	0.06	0.039	0.013	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU423_LIVER	0.06	1	0.052	TRUE	347	1186	183	220	0	FALSE	ACH-000493
SNU423_LIVER	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU423_LIVER	1	1	0.039	TRUE	0	0	0	434	0	FALSE	ACH-000493
SNU423_LIVER	PABPC4--LDHA	3	0	PABPC4	1640	chr1:40041823:-	LDHA	16513	chr11:18416110:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	PABPC4->chr1:40026488-40042462:-,poly(A)_binding_protein_cytoplasmic_4,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	SNU423_LIVER	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000493
SNU423_LIVER	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.67	0.8	0.026	0.026	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU423_LIVER	0.67	0.8	0.052	FALSE	467	2173	244	435	0	FALSE	ACH-000493
SNU423_LIVER	APPBP2--VPS35	2	0	APPBP2	1426	chr17:58603155:-	VPS35	29750	chr16:46717518:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-,VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-	SNU423_LIVER	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000493
SNU423_LIVER	CDH13--RP11-22H5.2	2	0	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	SNU423_LIVER	1	1	0.026	FALSE	14	31	0	36	0	FALSE	ACH-000493
SNU423_LIVER	DCBLD2--GNAS	2	0	DCBLD2	6582	chr3:98568305:-	GNAS	45665	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNU423_LIVER	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000493
SNU423_LIVER	KIF4A--HNRNPH2	2	0	KIF4A	1777	chrX:69510655:+	HNRNPH2	33068	chrX:100666924:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	KIF4A->chrX:69509879-69640682:+,kinesin_family_member_4A,HNRNPH2->chrX:100663283-100669121:+,heterogeneous_nuclear_ribonucleoprotein_H2_(H')	SNU423_LIVER	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000493
SNU423_LIVER	LINC00152--AC093616.4	1	4	LINC00152	1278	chr2:87755164:+	AC093616.4	17233	chr2:88000503:+	ONLY_REF_SPLICE	YES	402	0	0.01	1	0.013	0.0519	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	SNU423_LIVER	0.01	1	0.0649	FALSE	0	0	0	11	0	FALSE	ACH-000493
SNU423_LIVER	NCK1--STAG1	2	0	NCK1	1112	chr3:136581161:+	STAG1	36338	chr3:136141886:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1	SNU423_LIVER	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000493
SNU423_LIVER	RP11-123O10.4--GRIP1	1	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.013	0.0519	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU423_LIVER	1	1	0.0649	FALSE	93	270	15	244	0	FALSE	ACH-000493
SNU423_LIVER	RPL31--FRYL	2	0	RPL31	5008	chr2:101622533:+	FRYL	24301	chr4:48636507:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RPL31->chr2:101618177-101640494:+,ribosomal_protein_L31,FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-	SNU423_LIVER	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000493
SNU423_LIVER	RPSAP52--HMGA2	2	0	RPSAP52	1132	chr12:66220623:-	HMGA2	10409	chr12:66232299:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SNU423_LIVER	1	1	0.026	FALSE	0	2	0	7	0	FALSE	ACH-000493
SNU423_LIVER	SMARCA4--BSN	2	0	SMARCA4	1253	chr19:11071850:+	BSN	48039	chr3:49662408:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,BSN->bassoon_presynaptic_cytomatrix_protein,chr3:49591922-49708978:+	SNU423_LIVER	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000493
SNU423_LIVER	XRN2--OVOL2	2	0	XRN2	1170	chr20:21284111:+	OVOL2	37027	chr20:17937681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	SNU423_LIVER	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000493
SNU423_LIVER	PRR16--CTD-2334D19.1	1	3	PRR16	6887	chr5:119954260:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	NO	75	1	0.05	0.8	0.013	0.039	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SNU423_LIVER	0.05	0.8	0.052	FALSE	0	2	0	14	0	FALSE	ACH-000493
SNU423_LIVER	PRR16--CTD-2334D19.1	1	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	60	1	0.06	0.8	0.013	0.039	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SNU423_LIVER	0.06	0.8	0.052	FALSE	56	216	12	147	0	FALSE	ACH-000493
SNU423_LIVER	RP11-114H23.1--RP11-114H23.2	1	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.013	0.039	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU423_LIVER	1	1	0.052	FALSE	81	155	12	160	0	FALSE	ACH-000493
SNU423_LIVER	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.6	1	0.013	0.026	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU423_LIVER	0.6	1	0.039	FALSE	192	492	57	212	0	FALSE	ACH-000493
SNU423_LIVER	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.013	0.026	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU423_LIVER	0.75	1	0.039	FALSE	275	511	55	178	0	FALSE	ACH-000493
SNU423_LIVER	STAT3--PTRF	1	2	STAT3	1290	chr17:40540297:-	PTRF	28979	chr17:40557406:-	ONLY_REF_SPLICE	NO	158	1321	0.02	0	0.013	0.026	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:-:[13884],STAT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:40465342-40540586:-,signal_transducer_and_activator_of_transcription_3,PTRF->chr17:40554470-40575535:-,polymerase_I_and_transcript_release_factor	SNU423_LIVER	0	0.02	0.039	FALSE	0	6	1	3	4	FALSE	ACH-000493
SNU423_LIVER	ADAM12--DOCK1	1	1	ADAM12	3570	chr10:127967484:-	DOCK1	60411	chr10:128859932:+	ONLY_REF_SPLICE	NO	127	56	0.02	0.03	0.013	0.013	ADAM12->ADAM_metallopeptidase_domain_12,Oncogene{Bushman},chr10:127700950-128077024:-,DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1	SNU423_LIVER	0.02	0.03	0.026	TRUE	0	0	0	1	0	FALSE	ACH-000493
SNU423_LIVER	DOCK2--FAM196B	1	1	DOCK2	25715	chr5:169186779:+	FAM196B	72670	chr5:169291463:-	ONLY_REF_SPLICE	YES	51	18	0.04	0.1	0.013	0.013	DOCK2->chr5:169064251-169510386:+,dedicator_of_cytokinesis_2,FAM196B->chr5:169291268-169407744:-,family_with_sequence_similarity_196_member_B	SNU423_LIVER	0.04	0.1	0.026	TRUE	0	0	0	1	0	FALSE	ACH-000493
SNU423_LIVER	MTCH1--TIMP2	1	1	MTCH1	1446	chr6:36953629:-	TIMP2	19469	chr17:76853728:-	ONLY_REF_SPLICE	YES	420	666	0	0	0.013	0.013	MTCH1->chr6:36935917-36954074:-,mitochondrial_carrier_1,TIMP2->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_2,chr17:76849059-76921469:-	SNU423_LIVER	0	0	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000493
SNU423_LIVER	NCK1--STAG1	1	1	NCK1	4708	chr3:136647069:+	STAG1	25907	chr3:136221621:-	ONLY_REF_SPLICE	NO	66	58	0.03	0.03	0.013	0.013	NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1	SNU423_LIVER	0.03	0.03	0.026	TRUE	0	0	0	1	0	FALSE	ACH-000493
SNU423_LIVER	PITPNB--HPS4	1	1	PITPNB	12412	chr22:28254375:-	HPS4	38020	chr22:26849370:-	ONLY_REF_SPLICE	YES	197	52	0.01	0.04	0.013	0.013	PITPNB->chr22:28247657-28316122:-,phosphatidylinositol_transfer_protein_beta,HPS4->HPS4,_biogenesis_of_lysosomal_organelles_complex_3_subunit_2,chr22:26839389-26879803:-	SNU423_LIVER	0.01	0.04	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000493
SNU423_LIVER	PNISR--FN1	1	1	PNISR	5163	chr6:99860427:-	FN1	52452	chr2:216248907:-	ONLY_REF_SPLICE	YES	228	3322	0.01	0	0.013	0.013	PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	SNU423_LIVER	0	0.01	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000493
SNU423_LIVER	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	6	65	0.25	0.03	0.013	0.013	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU423_LIVER	0.03	0.25	0.026	FALSE	0	23	1	67	0	FALSE	ACH-000493
SNU423_LIVER	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.013	0.013	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SNU423_LIVER	1	1	0.026	TRUE	477	1352	189	275	0	FALSE	ACH-000493
SNU423_LIVER	SDF4--GNAS	1	1	SDF4	5392	chr1:1158624:-	GNAS	29673	chr20:57470667:+	ONLY_REF_SPLICE	YES	405	674	0	0	0.013	0.013	GTEx&tcga_normals:1/3694=0.03%,SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNU423_LIVER	0	0	0.026	FALSE	0	0	0	2	0	FALSE	ACH-000493
HCC33_LUNG	RLF--UBE2J2	1739	2326	RLF	1264	chr1:40627308:+	UBE2J2	20408	chr1:1203372:-	ONLY_REF_SPLICE	YES	641	25	0.86	0.99	21.2137	28.3744	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,UBE2J2->chr1:1189289-1209265:-,ubiquitin_conjugating_enzyme_E2_J2	HCC33_LUNG	0.86	0.99	49.5881	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	RLF--UBE2J2	577	1412	RLF	1264	chr1:40627308:+	UBE2J2	24092	chr1:1198766:-	ONLY_REF_SPLICE	YES	641	623	0.76	0.76	7.0387	17.2247	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,UBE2J2->chr1:1189289-1209265:-,ubiquitin_conjugating_enzyme_E2_J2	HCC33_LUNG	0.76	0.76	24.2634	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	RLF--FAM132A	768	587	RLF	1264	chr1:40627308:+	FAM132A	18683	chr1:1179877:-	ONLY_REF_SPLICE	YES	641	149	0.68	0.9	9.3687	7.1607	{Klijn_CCL:Lung=1},RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,FAM132A->chr1:1177826-1182102:-,family_with_sequence_similarity_132_member_A	HCC33_LUNG	0.68	0.9	16.5294	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	RLF--UBE2J2	428	1044	RLF	1264	chr1:40627308:+	UBE2J2	26309	chr1:1192690:-	ONLY_REF_SPLICE	YES	641	914	0.7	0.62	5.2211	12.7355	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,UBE2J2->chr1:1189289-1209265:-,ubiquitin_conjugating_enzyme_E2_J2	HCC33_LUNG	0.62	0.7	17.9566	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	UBE4B--TBCB	353	301	UBE4B	1863	chr1:10093752:+	TBCB	45008	chr19:36611612:+	ONLY_REF_SPLICE	YES	67	356	0.91	0.65	4.3062	3.6718	{Klijn_CCL:Lung=1},UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B	HCC33_LUNG	0.65	0.91	7.978	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	KANSL1--ARL17B	178	205	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	91	130	0.81	0.75	2.1714	2.5008	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC33_LUNG	0.75	0.81	4.6722	TRUE	181	1564	124	196	0	FALSE	ACH-000515
HCC33_LUNG	RLF--UBE2J2	87	544	RLF	1264	chr1:40627308:+	UBE2J2	26489	chr1:1192510:-	ONLY_REF_SPLICE	YES	641	2044	0.5	0.24	1.0613	6.6361	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,UBE2J2->chr1:1189289-1209265:-,ubiquitin_conjugating_enzyme_E2_J2	HCC33_LUNG	0.24	0.5	7.6974	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	TRIT1--EP400	142	116	TRIT1	13488	chr1:40306807:-	EP400	17647	chr12:132445130:+	INCL_NON_REF_SPLICE	YES	7	0	0.97	1	1.7322	1.4151	{Klijn_CCL:Lung=1},TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,EP400->E1A_binding_protein_p400,Oncogene{Bushman},chr12:132434508-132565005:+	HCC33_LUNG	0.97	1	3.1473	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	TCF12--CGNL1	99	133	TCF12	3439	chr15:57213296:+	CGNL1	52685	chr15:57730183:+	ONLY_REF_SPLICE	YES	107	1	0.68	1	1.2077	1.6224	NEIGHBORS[76686],TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,CGNL1->chr15:57668165-57842925:+,cingulin-like_1	HCC33_LUNG	0.68	1	2.8301	FALSE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	TIMM23B--LINC00843	91	51	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1101	0.6221	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC33_LUNG	1	1	1.7322	TRUE	508	994	45	981	0	FALSE	ACH-000515
HCC33_LUNG	UBE4B--TBCB	3	304	UBE4B	1863	chr1:10093752:+	TBCB	44871	chr19:36611475:+	INCL_NON_REF_SPLICE	YES	67	393	0.82	0.44	0.0366	3.7084	{Klijn_CCL:Lung=1},UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B	HCC33_LUNG	0.44	0.82	3.745	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	TIMM23--RP11-464F9.1	61	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	280	7	0.19	0.91	0.7441	0.0732	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC33_LUNG	0.19	0.91	0.8173	TRUE	519	3926	326	965	0	FALSE	ACH-000515
HCC33_LUNG	MT-ND6--MT-TE	59	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7197	0.0244	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC33_LUNG	1	1	0.7441	FALSE	499	1288	110	792	0	FALSE	ACH-000515
HCC33_LUNG	PCSK2--SLC25A29	39	45	PCSK2	10904	chr20:17417528:+	SLC25A29	26615	chr14:100765222:-	ONLY_REF_SPLICE	YES	144	136	0.37	0.38	0.4758	0.5489	PCSK2->chr20:17206752-17465223:+,proprotein_convertase_subtilisin/kexin_type_2,SLC25A29->chr14:100757448-100772884:-,solute_carrier_family_25_member_29	HCC33_LUNG	0.37	0.38	1.0247	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	RLF--FAM132A	4	180	RLF	1264	chr1:40627308:+	FAM132A	18905	chr1:1179655:-	ONLY_REF_SPLICE	YES	641	198	0.22	0.48	0.0488	2.1958	{Klijn_CCL:Lung=1},RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,FAM132A->chr1:1177826-1182102:-,family_with_sequence_similarity_132_member_A	HCC33_LUNG	0.22	0.48	2.2446	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	MT-ATP6--MT-RNR2	41	0	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5002	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC33_LUNG	1	1	0.5002	FALSE	63	17	1	58	0	FALSE	ACH-000515
HCC33_LUNG	MT-ND6--MT-TE	40	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.488	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC33_LUNG	1	1	0.488	FALSE	499	1288	110	792	0	FALSE	ACH-000515
HCC33_LUNG	MIR3654--SZT2	31	34	MIR3654	2319	chr11:62356503:-	SZT2	19684	chr1:43868848:+	ONLY_REF_SPLICE	YES	152	1	0.3	0.98	0.3782	0.4148	MIR3654->chr11:62327075-62359003:-,microRNA_3654,SZT2->chr1:43855553-43918321:+,seizure_threshold_2_homolog_(mouse)	HCC33_LUNG	0.3	0.98	0.793	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	ZNF654--HMGB2	35	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.427	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HCC33_LUNG	1	1	0.427	TRUE	0	0	0	518	0	FALSE	ACH-000515
HCC33_LUNG	SUV420H1--CATSPER1	24	27	SUV420H1	3465	chr11:67957384:-	CATSPER1	28969	chr11:65786373:-	ONLY_REF_SPLICE	YES	163	0	0.24	1	0.2928	0.3294	{Klijn_CCL:Lung=1},SUV420H1->chr11:67922330-67981295:-,CATSPER1->cation_channel_sperm_associated_1,chr11:65784223-65793988:-	HCC33_LUNG	0.24	1	0.6222	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	MT-TA--MT-TC	25	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.305	0.0244	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC33_LUNG	1	1	0.3294	FALSE	462	80	0	856	0	FALSE	ACH-000515
HCC33_LUNG	MT-ND6--MT-TE	25	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.305	0.0122	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC33_LUNG	1	1	0.3172	FALSE	499	1288	110	792	0	FALSE	ACH-000515
HCC33_LUNG	RP11-444D3.1--SOX5	18	18	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2196	0.2196	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HCC33_LUNG	1	1	0.4392	TRUE	477	1352	189	275	0	FALSE	ACH-000515
HCC33_LUNG	RP11-499F3.2--TYW1	19	5	RP11-499F3.2	1198	chr15:82163269:-	TYW1	23788	chr7:66648113:+	ONLY_REF_SPLICE	YES	0	114	1	0.17	0.2318	0.061	RP11-499F3.2->chr15:81952823-82163466:-,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	HCC33_LUNG	0.17	1	0.2928	TRUE	1	3	0	7	3	TRUE	ACH-000515
HCC33_LUNG	FBRSL1--COL9A2	17	1	FBRSL1	2311	chr12:133067447:+	COL9A2	37933	chr1:40771859:-	ONLY_REF_SPLICE	YES	15	3965	0.55	0	0.2074	0.0122	{Klijn_CCL:Lung=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,COL9A2->chr1:40766159-40783488:-,collagen_type_IX_alpha_2	HCC33_LUNG	0	0.55	0.2196	TRUE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	KANSL1--ARL17B	1	64	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	91	116	0.42	0.36	0.0122	0.7807	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC33_LUNG	0.36	0.42	0.7929	TRUE	20	16	0	28	0	FALSE	ACH-000515
HCC33_LUNG	KANSL1--ARL17B	3	55	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	137	130	0.3	0.31	0.0366	0.6709	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC33_LUNG	0.3	0.31	0.7075	TRUE	105	90	7	93	0	FALSE	ACH-000515
HCC33_LUNG	NRIP1--AF127936.7	16	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1952	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC33_LUNG	1	1	0.1952	FALSE	292	1546	117	613	0	FALSE	ACH-000515
HCC33_LUNG	EP400NL--COL9A2	12	15	EP400NL	3520	chr12:132575488:+	COL9A2	37813	chr1:40767561:-	ONLY_REF_SPLICE	YES	461	2552	0.06	0.01	0.1464	0.183	EP400NL->EP400_N-terminal_like,chr12:132568828-132613029:+,COL9A2->chr1:40766159-40783488:-,collagen_type_IX_alpha_2	HCC33_LUNG	0.01	0.06	0.3294	TRUE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	MT-TA--MT-TC	15	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.183	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC33_LUNG	1	1	0.183	FALSE	462	80	0	856	0	FALSE	ACH-000515
HCC33_LUNG	RLF--UBE2J2	2	52	RLF	1264	chr1:40627308:+	UBE2J2	28132	chr1:1190867:-	ONLY_REF_SPLICE	YES	641	1986	0.08	0.03	0.0244	0.6343	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,UBE2J2->chr1:1189289-1209265:-,ubiquitin_conjugating_enzyme_E2_J2	HCC33_LUNG	0.03	0.08	0.6587	TRUE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	OR51S1--TP53I11	14	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1708	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HCC33_LUNG	1	1	0.1708	TRUE	402	216	10	229	0	FALSE	ACH-000515
HCC33_LUNG	RP11-444D3.1--SOX5	9	15	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.1098	0.183	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HCC33_LUNG	0.96	1	0.2928	TRUE	274	363	69	150	0	FALSE	ACH-000515
HCC33_LUNG	MT-ND6--MT-TE	11	3	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1342	0.0366	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC33_LUNG	1	1	0.1708	FALSE	499	1288	110	792	0	FALSE	ACH-000515
HCC33_LUNG	TRIT1--EP400	9	11	TRIT1	12935	chr1:40307360:-	EP400	17647	chr12:132445130:+	INCL_NON_REF_SPLICE	YES	5146	0	0	1	0.1098	0.1342	{Klijn_CCL:Lung=1},TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,EP400->E1A_binding_protein_p400,Oncogene{Bushman},chr12:132434508-132565005:+	HCC33_LUNG	0	1	0.244	TRUE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	MT-ATP6--MT-RNR2	11	0	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1342	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC33_LUNG	1	1	0.1342	FALSE	63	17	1	58	0	FALSE	ACH-000515
HCC33_LUNG	FBRSL1--GALNT9	8	9	FBRSL1	9322	chr12:133102409:+	GALNT9	29099	chr12:132863016:-	ONLY_REF_SPLICE	YES	314	0	0.05	1	0.0976	0.1098	FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,GALNT9->chr12:132680924-132905935:-,polypeptide_N-acetylgalactosaminyltransferase_9	HCC33_LUNG	0.05	1	0.2074	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	TRIT1--EP400	9	3	TRIT1	1194	chr1:40348990:-	EP400	17647	chr12:132445130:+	ONLY_REF_SPLICE	YES	3961	0	0	1	0.1098	0.0366	{Klijn_CCL:Lung=1},TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,EP400->E1A_binding_protein_p400,Oncogene{Bushman},chr12:132434508-132565005:+	HCC33_LUNG	0	1	0.1464	TRUE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	SUV420H1--CATSPER1	7	9	SUV420H1	1352	chr11:67980944:-	CATSPER1	28969	chr11:65786373:-	ONLY_REF_SPLICE	YES	26	0	0.38	1	0.0854	0.1098	{Klijn_CCL:Lung=1},SUV420H1->chr11:67922330-67981295:-,CATSPER1->cation_channel_sperm_associated_1,chr11:65784223-65793988:-	HCC33_LUNG	0.38	1	0.1952	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	TRIT1--EP400	7	8	TRIT1	11709	chr1:40309773:-	EP400	17647	chr12:132445130:+	ONLY_REF_SPLICE	YES	6650	0	0	1	0.0854	0.0976	{Klijn_CCL:Lung=1},TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,EP400->E1A_binding_protein_p400,Oncogene{Bushman},chr12:132434508-132565005:+	HCC33_LUNG	0	1	0.183	TRUE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	MT-TA--MT-TC	8	1	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0976	0.0122	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC33_LUNG	1	1	0.1098	FALSE	462	80	0	856	0	FALSE	ACH-000515
HCC33_LUNG	RP11-120D5.1--MID1	7	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	11	18	0.52	0.4	0.0854	0.061	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC33_LUNG	0.4	0.52	0.1464	FALSE	16	356	14	466	0	FALSE	ACH-000515
HCC33_LUNG	EP400NL--COL9A2	4	16	EP400NL	4093	chr12:132576061:+	COL9A2	37813	chr1:40767561:-	ONLY_REF_SPLICE	YES	467	2552	0.04	0.01	0.0488	0.1952	EP400NL->EP400_N-terminal_like,chr12:132568828-132613029:+,COL9A2->chr1:40766159-40783488:-,collagen_type_IX_alpha_2	HCC33_LUNG	0.01	0.04	0.244	TRUE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	TRIT1--EP400	5	11	TRIT1	12906	chr1:40307389:-	EP400	17647	chr12:132445130:+	INCL_NON_REF_SPLICE	YES	5026	0	0	1	0.061	0.1342	{Klijn_CCL:Lung=1},TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,EP400->E1A_binding_protein_p400,Oncogene{Bushman},chr12:132434508-132565005:+	HCC33_LUNG	0	1	0.1952	TRUE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	MT-ND4--MTND4LP1	7	1	MT-ND4	1073	chrM:10832:+	MTND4LP1	5391	chrX:125606723:+	INCL_NON_REF_SPLICE	YES	6318	0	0	1	0.0854	0.0122	MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MTND4LP1->chrX:125606711-125606867:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L_pseudogene_1	HCC33_LUNG	0	1	0.0976	FALSE	1	0	0	2	0	FALSE	ACH-000515
HCC33_LUNG	RP4-565E6.1--HYDIN	6	5	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0732	0.061	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HCC33_LUNG	0.92	1	0.1342	TRUE	456	1387	91	133	0	FALSE	ACH-000515
HCC33_LUNG	RP11-123O10.4--GRIP1	5	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	2	1	0.87	0.061	0.0976	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC33_LUNG	0.87	1	0.1586	FALSE	416	2512	207	587	0	FALSE	ACH-000515
HCC33_LUNG	MTA2--C12orf76	5	7	MTA2	2675	chr11:62367638:-	C12orf76	15099	chr12:110503838:-	ONLY_REF_SPLICE	YES	298	0	0.04	1	0.061	0.0854	MTA2->chr11:62360686-62369312:-,metastasis_associated_1_family_member_2,C12orf76->chr12:110465872-110511491:-,chromosome_12_open_reading_frame_76	HCC33_LUNG	0.04	1	0.1464	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	SPSB4--ACPL2	5	7	SPSB4	3438	chr3:140785640:+	ACPL2	18637	chr3:140978965:+	ONLY_REF_SPLICE	YES	142	2	0.08	0.86	0.061	0.0854	NEIGHBORS[80115],SPSB4->chr3:140770244-140867453:+,splA/ryanodine_receptor_domain_and_SOCS_box_containing_4,ACPL2->chr3:140947568-141013748:+	HCC33_LUNG	0.08	0.86	0.1464	FALSE	0	11	0	4	0	FALSE	ACH-000515
HCC33_LUNG	UBE4B--TBCB	4	11	UBE4B	1863	chr1:10093752:+	TBCB	47472	chr19:36616353:+	ONLY_REF_SPLICE	YES	67	312	0.18	0.05	0.0488	0.1342	{Klijn_CCL:Lung=1},UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B	HCC33_LUNG	0.05	0.18	0.183	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	RABGAP1L--CACYBP	6	2	RABGAP1L	18286	chr1:174363283:+	CACYBP	57005	chr1:174973750:+	ONLY_REF_SPLICE	YES	6	725	0.57	0.01	0.0732	0.0244	{Klijn_CCL:Lung=1},NEIGHBORS[3855],RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,CACYBP->calcyclin_binding_protein,chr1:174968300-174980851:+	HCC33_LUNG	0.01	0.57	0.0976	FALSE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	PUM1--RP11-867G23.3	5	5	PUM1	6137	chr1:31501643:-	RP11-867G23.3	34479	chr11:66040063:-	ONLY_REF_SPLICE	YES	153	0	0.06	1	0.061	0.061	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,RP11-867G23.3->chr11:66037303-66045996:-	HCC33_LUNG	0.06	1	0.122	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	MT-ATP6--MT-RNR2	6	0	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0732	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC33_LUNG	1	1	0.0732	FALSE	63	17	1	58	0	FALSE	ACH-000515
HCC33_LUNG	NRIP1--AF127936.7	4	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	122	0	0.09	1	0.0488	0.0976	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC33_LUNG	0.09	1	0.1464	FALSE	164	806	69	479	0	FALSE	ACH-000515
HCC33_LUNG	MT-ND6--MT-TE	5	3	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0.0366	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC33_LUNG	1	1	0.0976	FALSE	499	1288	110	792	0	FALSE	ACH-000515
HCC33_LUNG	MT-ND6--MT-TE	5	2	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.061	0.0244	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC33_LUNG	0.88	1	0.0854	FALSE	499	1288	110	792	0	FALSE	ACH-000515
HCC33_LUNG	PCSK2--CHCHD3	4	6	PCSK2	4301	chr20:17240989:+	CHCHD3	24575	chr7:132754989:-	ONLY_REF_SPLICE	YES	264	435	0.04	0.02	0.0488	0.0732	{Klijn_CCL:Lung=1},PCSK2->chr20:17206752-17465223:+,proprotein_convertase_subtilisin/kexin_type_2,CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3	HCC33_LUNG	0.02	0.04	0.122	TRUE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	ZNF382--UBE4B	5	2	ZNF382	6105	chr19:37101644:+	UBE4B	14437	chr1:10132086:+	ONLY_REF_SPLICE	YES	4	63	0.64	0.1	0.061	0.0244	ZNF382->chr19:37095719-37119499:+,zinc_finger_protein_382,UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B	HCC33_LUNG	0.1	0.64	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	MT-ND1--MT-RNR2	5	1	MT-ND1	1272	chrM:3578:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	YES	35	0	0.15	1	0.061	0.0122	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC33_LUNG	0.15	1	0.0732	FALSE	114	26	4	85	0	FALSE	ACH-000515
HCC33_LUNG	MT-ND6--MT-TE	5	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.061	0.0122	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC33_LUNG	1	1	0.0732	FALSE	499	1288	110	792	0	FALSE	ACH-000515
HCC33_LUNG	SUV420H1--CATSPER1	3	9	SUV420H1	1691	chr11:67980605:-	CATSPER1	28969	chr11:65786373:-	ONLY_REF_SPLICE	YES	45	0	0.21	1	0.0366	0.1098	{Klijn_CCL:Lung=1},SUV420H1->chr11:67922330-67981295:-,CATSPER1->cation_channel_sperm_associated_1,chr11:65784223-65793988:-	HCC33_LUNG	0.21	1	0.1464	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	C15orf57--CBX3	4	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	55	40	0.11	0.15	0.0488	0.0366	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC33_LUNG	0.11	0.15	0.0854	TRUE	267	562	48	632	0	FALSE	ACH-000515
HCC33_LUNG	MT-TA--MT-TC	4	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0.0244	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC33_LUNG	1	1	0.0732	FALSE	462	80	0	856	0	FALSE	ACH-000515
HCC33_LUNG	MT-TA--MT-TC	4	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0.0244	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC33_LUNG	1	1	0.0732	FALSE	462	80	0	856	0	FALSE	ACH-000515
HCC33_LUNG	MTA2--C12orf76	3	6	MTA2	2675	chr11:62367638:-	C12orf76	16273	chr12:110496968:-	ONLY_REF_SPLICE	YES	298	0	0.03	1	0.0366	0.0732	MTA2->chr11:62360686-62369312:-,metastasis_associated_1_family_member_2,C12orf76->chr12:110465872-110511491:-,chromosome_12_open_reading_frame_76	HCC33_LUNG	0.03	1	0.1098	TRUE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC33_LUNG	1	1	0.0488	FALSE	499	1288	110	792	0	FALSE	ACH-000515
HCC33_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0488	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC33_LUNG	1	1	0.0488	FALSE	499	1288	110	792	0	FALSE	ACH-000515
HCC33_LUNG	EP400NL--COL9A2	1	11	EP400NL	2034	chr12:132569861:+	COL9A2	37813	chr1:40767561:-	ONLY_REF_SPLICE	YES	558	2552	0.02	0	0.0122	0.1342	EP400NL->EP400_N-terminal_like,chr12:132568828-132613029:+,COL9A2->chr1:40766159-40783488:-,collagen_type_IX_alpha_2	HCC33_LUNG	0	0.02	0.1464	TRUE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	MT-ND6--MT-TE	3	3	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0366	0.0366	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC33_LUNG	1	1	0.0732	FALSE	499	1288	110	792	0	FALSE	ACH-000515
HCC33_LUNG	MT-ND1--MT-RNR2	3	2	MT-ND1	1435	chrM:3741:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	85	0	0.06	1	0.0366	0.0244	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC33_LUNG	0.06	1	0.061	FALSE	114	26	4	85	0	FALSE	ACH-000515
HCC33_LUNG	EP400NL--COL9A2	3	1	EP400NL	1117	chr12:132568944:+	COL9A2	37813	chr1:40767561:-	ONLY_REF_SPLICE	YES	10	2552	0.29	0	0.0366	0.0122	EP400NL->EP400_N-terminal_like,chr12:132568828-132613029:+,COL9A2->chr1:40766159-40783488:-,collagen_type_IX_alpha_2	HCC33_LUNG	0	0.29	0.0488	FALSE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	MT-ND6--MT-TE	3	1	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0366	0.0122	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC33_LUNG	1	1	0.0488	FALSE	499	1288	110	792	0	FALSE	ACH-000515
HCC33_LUNG	RP11-680G10.1--GSE1	2	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	13	1	0.35	0.0244	0.061	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC33_LUNG	0.35	1	0.0854	TRUE	458	1351	185	561	0	FALSE	ACH-000515
HCC33_LUNG	SDF4--RP13-895J2.7	3	1	SDF4	2619	chr1:1163848:-	RP13-895J2.7	15196	chr12:132908045:+	ONLY_REF_SPLICE	YES	2686	0	0	1	0.0366	0.0122	SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,RP13-895J2.7->chr12:132906436-132908161:+	HCC33_LUNG	0	1	0.0488	FALSE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	TRIT1--EP400	1	9	TRIT1	12790	chr1:40307505:-	EP400	17647	chr12:132445130:+	ONLY_REF_SPLICE	YES	5425	0	0	1	0.0122	0.1098	{Klijn_CCL:Lung=1},TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,EP400->E1A_binding_protein_p400,Oncogene{Bushman},chr12:132434508-132565005:+	HCC33_LUNG	0	1	0.122	TRUE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	VTI1A--RP11-57H14.3	3	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	58	0	0.06	1	0.0366	0.0122	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HCC33_LUNG	0.06	1	0.0488	FALSE	272	151	14	158	0	FALSE	ACH-000515
HCC33_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0366	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC33_LUNG	1	1	0.0366	FALSE	63	17	1	58	0	FALSE	ACH-000515
HCC33_LUNG	MT-ND4--MTND4LP1	3	0	MT-ND4	1051	chrM:10810:+	MTND4LP1	5532	chrX:125606864:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0366	0	MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MTND4LP1->chrX:125606711-125606867:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L_pseudogene_1	HCC33_LUNG	1	1	0.0366	FALSE	1	0	0	2	0	FALSE	ACH-000515
HCC33_LUNG	MT-ND4--MTND4LP1	3	0	MT-ND4	1058	chrM:10817:+	MTND4LP1	5492	chrX:125606824:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0366	0	MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MTND4LP1->chrX:125606711-125606867:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L_pseudogene_1	HCC33_LUNG	1	1	0.0366	FALSE	1	0	0	2	0	FALSE	ACH-000515
HCC33_LUNG	RP11-123O10.4--GRIP1	2	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	7	1	0.46	0.0244	0.0488	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC33_LUNG	0.46	1	0.0732	FALSE	93	270	15	244	0	FALSE	ACH-000515
HCC33_LUNG	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	49	0	0.08	1	0.0244	0.0244	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC33_LUNG	0.08	1	0.0488	FALSE	125	705	46	456	0	FALSE	ACH-000515
HCC33_LUNG	RP11-680G10.1--GSE1	1	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	23	1	0.21	0.0122	0.061	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC33_LUNG	0.21	1	0.0732	TRUE	465	1949	224	605	0	FALSE	ACH-000515
HCC33_LUNG	SF1--GNAS	2	1	SF1	3289	chr11:64543970:-	GNAS	32063	chr20:57470667:+	ONLY_REF_SPLICE	YES	738	1162	0	0	0.0244	0.0122	GTEx_FI:{Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=3,Pituitary=3,Minor_Salivary_Gland=1,Brain_-_Hypothalamus=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HCC33_LUNG	0	0	0.0366	FALSE	4	13	1	15	0	FALSE	ACH-000515
HCC33_LUNG	AL132709.5--CAAP1	2	0	AL132709.5	8473	chr14:101415933:+	CAAP1	22122	chr9:26887511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	AL132709.5->chr14:101403738-101426536:+,CAAP1->caspase_activity_and_apoptosis_inhibitor_1,chr9:26840683-26892802:-	HCC33_LUNG	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	CDK5RAP2--RABGAP1	2	0	CDK5RAP2	25976	chr9:123215734:-	RABGAP1	69187	chr9:125827627:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,RABGAP1->RAB_GTPase_activating_protein_1,chr9:125703112-125867145:+	HCC33_LUNG	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	CDYL2--GOLGA8A	2	0	CDYL2	1180	chr16:80838047:-	GOLGA8A	35353	chr15:34699936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2,GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A	HCC33_LUNG	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	CHFR--ETV1	2	0	CHFR	2239	chr12:133522207:-	ETV1	45179	chr7:13978871:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,ETV1->ArcherDX_panel,ETS_variant_1,FoundationOne_panel,Oncogene{Bushman},chr7:13930853-14031050:-	HCC33_LUNG	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	PHF6--ZDHHC13	2	0	PHF6	12243	chrX:133559360:+	ZDHHC13	21423	chr11:19164525:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	PHF6->Oncogene{Bushman},PHD_finger_protein_6,chrX:133507283-133562820:+,ZDHHC13->chr11:19138646-19197969:+,zinc_finger_DHHC-type_containing_13	HCC33_LUNG	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	RP11-120D5.1--MID1	1	4	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	18	18	0.22	0.22	0.0122	0.0488	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC33_LUNG	0.22	0.22	0.061	FALSE	0	48	1	163	0	FALSE	ACH-000515
HCC33_LUNG	TRA2B--XXYLT1	2	0	TRA2B	1312	chr3:185655613:-	XXYLT1	35322	chr3:194877310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),XXYLT1->Oncogene{Bushman},chr3:194789008-194991896:-,xyloside_xylosyltransferase_1	HCC33_LUNG	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	U2SURP--YWHAQ	2	0	U2SURP	4885	chr3:142720515:+	YWHAQ	44750	chr2:9731644:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+,YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta	HCC33_LUNG	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000515
HCC33_LUNG	TIMM23B--LINC00843	1	3	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0122	0.0366	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC33_LUNG	0.8	1	0.0488	TRUE	62	24	1	171	0	FALSE	ACH-000515
HCC33_LUNG	TRIT1--EP400	1	3	TRIT1	8115	chr1:40315791:-	EP400	17647	chr12:132445130:+	ONLY_REF_SPLICE	YES	4487	0	0	1	0.0122	0.0366	{Klijn_CCL:Lung=1},TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,EP400->E1A_binding_protein_p400,Oncogene{Bushman},chr12:132434508-132565005:+	HCC33_LUNG	0	1	0.0488	FALSE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	SCAF4--CHMP1A	1	2	SCAF4	16796	chr21:33057362:-	CHMP1A	27950	chr16:89713739:-	ONLY_REF_SPLICE	YES	285	251	0.01	0.01	0.0122	0.0244	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=22;pct=0.25%;dist=Small_Intestine_-_Terminal_Ileum=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Breast_-_Mammary_Tissue=1,Lung=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Brain_-_Frontal_Cortex_(BA9)=1,Uterus=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellar_Hemisphere=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Testis=1,Cells_-_Transformed_fibroblasts=1},SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HCC33_LUNG	0.01	0.01	0.0366	FALSE	8	8	2	7	0	FALSE	ACH-000515
HCC33_LUNG	CCDC122--ENOX1	1	1	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	18	2	0.1	0.5	0.0122	0.0122	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	HCC33_LUNG	0.1	0.5	0.0244	FALSE	39	52	2	34	0	FALSE	ACH-000515
HCC33_LUNG	DTYMK--ATG4B	1	1	DTYMK	2223	chr2:242625184:-	ATG4B	21075	chr2:242606060:+	ONLY_REF_SPLICE	YES	540	415	0	0	0.0122	0.0122	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[1885],DTYMK->chr2:242615157-242626406:-,deoxythymidylate_kinase,ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+	HCC33_LUNG	0	0	0.0244	FALSE	0	0	0	5	0	FALSE	ACH-000515
HCC33_LUNG	FBRSL1--COL9A2	1	1	FBRSL1	2311	chr12:133067447:+	COL9A2	38352	chr1:40771440:-	ONLY_REF_SPLICE	YES	15	3681	0.12	0	0.0122	0.0122	{Klijn_CCL:Lung=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,COL9A2->chr1:40766159-40783488:-,collagen_type_IX_alpha_2	HCC33_LUNG	0	0.12	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	FBRSL1--GALNT9	1	1	FBRSL1	10358	chr12:133104574:+	GALNT9	41076	chr12:132688235:-	ONLY_REF_SPLICE	NO	297	12	0.01	0.14	0.0122	0.0122	FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,GALNT9->chr12:132680924-132905935:-,polypeptide_N-acetylgalactosaminyltransferase_9	HCC33_LUNG	0.01	0.14	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000515
HCC33_LUNG	NDUFA4--PHF14	1	1	NDUFA4	1241	chr7:10979643:-	PHF14	24705	chr7:11091239:+	ONLY_REF_SPLICE	NO	1581	284	0	0.01	0.0122	0.0122	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HCC33_LUNG	0	0.01	0.0244	FALSE	0	2	0	3	0	FALSE	ACH-000515
HCC33_LUNG	SF1--FUS	1	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	738	980	0	0	0.0122	0.0122	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	HCC33_LUNG	0	0	0.0244	FALSE	5	20	0	32	0	FALSE	ACH-000515
HCC33_LUNG	ZNF738--MICU2	1	1	ZNF738	7035	chr19:21558766:+	MICU2	27459	chr13:22069457:-	ONLY_REF_SPLICE	YES	125	432	0.02	0	0.0122	0.0122	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,MICU2->chr13:22066836-22178353:-,mitochondrial_calcium_uptake_2	HCC33_LUNG	0	0.02	0.0244	FALSE	0	0	0	2	0	FALSE	ACH-000515
NCIH2029_LUNG	GPC6--MYO16	122	115	GPC6	4326	chr13:94482798:+	MYO16	33614	chr13:109535407:+	ONLY_REF_SPLICE	YES	39	0	0.86	1	1.3012	1.2266	GPC6->chr13:93879095-95059655:+,glypican_6,MYO16->chr13:109248500-109860355:+,myosin_XVI	NCIH2029_LUNG	0.86	1	2.5278	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	RP11-123O10.4--GRIP1	54	24	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	3	1	0.96	0.576	0.256	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2029_LUNG	0.96	1	0.832	FALSE	416	2512	207	587	0	FALSE	ACH-000298
NCIH2029_LUNG	TIMM23B--LINC00843	44	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4693	0.1813	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2029_LUNG	1	1	0.6506	TRUE	508	994	45	981	0	FALSE	ACH-000298
NCIH2029_LUNG	ZNF654--HMGB2	48	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.512	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2029_LUNG	1	1	0.512	TRUE	0	0	0	518	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-TA--MT-TC	42	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.448	0.1067	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2029_LUNG	1	1	0.5547	FALSE	462	80	0	856	0	FALSE	ACH-000298
NCIH2029_LUNG	DSE--NT5DC1	34	7	DSE	2645	chr6:116580130:+	NT5DC1	39937	chr6:116565072:+	ONLY_REF_SPLICE	YES	50	39	0.45	0.51	0.3626	0.0747	LOCAL_REARRANGEMENT:+:[4676],DSE->chr6:116575336-116762424:+,dermatan_sulfate_epimerase,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	NCIH2029_LUNG	0.45	0.51	0.4373	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ND4L	3	122	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	28	0	0.82	1	0.032	1.3012	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2029_LUNG	0.82	1	1.3332	FALSE	344	826	44	306	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ND4L	3	121	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	27	0	0.82	1	0.032	1.2906	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2029_LUNG	0.82	1	1.3226	FALSE	344	826	44	306	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND5--MT-ATP8	27	6	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3856	5	0.01	0.87	0.288	0.064	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0.01	0.87	0.352	FALSE	43	37	8	105	0	FALSE	ACH-000298
NCIH2029_LUNG	BAZ1A--AKAP6	23	13	BAZ1A	7988	chr14:35280141:-	AKAP6	63539	chr14:33242884:+	ONLY_REF_SPLICE	YES	128	69	0.22	0.34	0.2453	0.1387	BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	NCIH2029_LUNG	0.22	0.34	0.384	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	STRN3--STXBP6	22	12	STRN3	1498	chr14:31495110:-	STXBP6	30950	chr14:25444056:-	ONLY_REF_SPLICE	YES	60	12	0.36	0.74	0.2346	0.128	STRN3->chr14:31363005-31495607:-,striatin_3,STXBP6->chr14:25278862-25519503:-,syntaxin_binding_protein_6	NCIH2029_LUNG	0.36	0.74	0.3626	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	OR51S1--TP53I11	24	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.256	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH2029_LUNG	1	1	0.256	TRUE	402	216	10	229	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ND4L	4	76	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.96	1	0.0427	0.8106	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2029_LUNG	0.96	1	0.8533	FALSE	344	821	44	306	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ND4L	3	80	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	9	0	0.9	1	0.032	0.8533	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2029_LUNG	0.9	1	0.8853	FALSE	344	826	44	306	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ND4L	3	79	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	82	0	0.5	1	0.032	0.8426	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2029_LUNG	0.5	1	0.8746	FALSE	344	827	44	306	0	FALSE	ACH-000298
NCIH2029_LUNG	SPG11--MRPL52	22	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2346	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	NCIH2029_LUNG	1	1	0.2346	TRUE	38	11	0	19	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ND4L	15	18	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8017	0	0	1	0.16	0.192	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2029_LUNG	0	1	0.352	FALSE	344	827	44	306	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ND4L	3	65	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	13	0	0.84	1	0.032	0.6933	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2029_LUNG	0.84	1	0.7253	FALSE	344	826	44	306	0	FALSE	ACH-000298
NCIH2029_LUNG	TIMM23--RP11-464F9.1	19	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	104	4	0.16	0.83	0.2026	0.0107	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2029_LUNG	0.16	0.83	0.2133	TRUE	519	3926	326	965	0	FALSE	ACH-000298
NCIH2029_LUNG	C15orf57--CBX3	15	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	40	29	0.42	0.5	0.16	0.1493	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2029_LUNG	0.42	0.5	0.3093	TRUE	267	562	48	632	0	FALSE	ACH-000298
NCIH2029_LUNG	FAM179B--RP11-945F5.1	17	3	FAM179B	3260	chr14:45433670:+	RP11-945F5.1	34357	chr14:46037729:+	ONLY_REF_SPLICE	YES	29	0	0.41	1	0.1813	0.032	FAM179B->chr14:45431411-45543634:+,family_with_sequence_similarity_179_member_B,RP11-945F5.1->chr14:46037198-46038272:+	NCIH2029_LUNG	0.41	1	0.2133	TRUE	0	1	0	2	1	TRUE	ACH-000298
NCIH2029_LUNG	DDOST--RP4-749H3.1	15	9	DDOST	1627	chr1:20987374:-	RP4-749H3.1	20617	chr1:20700231:-	ONLY_REF_SPLICE	YES	477	10	0.05	0.71	0.16	0.096	DDOST->chr1:20978270-20988000:-,dolichyl-diphosphooligosaccharide--protein_glycosyltransferase_non-catalytic_subunit,RP4-749H3.1->chr1:20687072-20757727:-	NCIH2029_LUNG	0.05	0.71	0.256	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ATP8	17	1	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	9277	0	0	1	0.1813	0.0107	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0	1	0.192	FALSE	230	193	14	283	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND5--MT-ATP8	13	16	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5	0	0.85	1	0.1387	0.1707	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0.85	1	0.3094	FALSE	43	37	8	105	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND6--MT-TE	15	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.16	0.064	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2029_LUNG	1	1	0.224	FALSE	499	1288	110	792	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ATP6--MT-CO1	16	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9816	25521	0	0	0.1707	0.0107	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2029_LUNG	0	0	0.1814	FALSE	183	104	9	328	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ND4L	3	50	MT-ND4	1519	chrM:11278:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	YES	791	0	0.06	1	0.032	0.5333	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2029_LUNG	0.06	1	0.5653	FALSE	344	827	44	306	0	FALSE	ACH-000298
NCIH2029_LUNG	LINC01014--KCNMB2	15	0	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.16	0	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH2029_LUNG	1	1	0.16	FALSE	11	60	26	37	0	FALSE	ACH-000298
NCIH2029_LUNG	LINC01014--KCNMB2	14	0	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1493	0	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH2029_LUNG	1	1	0.1493	FALSE	12	33	18	33	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND6--MT-TE	13	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1387	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2029_LUNG	1	1	0.1387	FALSE	499	1288	110	792	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ATP8	12	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.128	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	1	1	0.128	FALSE	230	193	14	283	0	FALSE	ACH-000298
NCIH2029_LUNG	CLIP2--CACNA2D2	10	6	CLIP2	19155	chr7:73811563:+	CACNA2D2	36348	chr3:50418557:-	ONLY_REF_SPLICE	YES	7	0	0.7	1	0.1067	0.064	CLIP2->CAP-Gly_domain_containing_linker_protein_2,chr7:73703805-73820273:+,CACNA2D2->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_2,chr3:50400233-50541675:-	NCIH2029_LUNG	0.7	1	0.1707	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	C15orf57--CBX3	9	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	40	31	0.27	0.33	0.096	0.064	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2029_LUNG	0.27	0.33	0.16	TRUE	267	562	48	632	0	FALSE	ACH-000298
NCIH2029_LUNG	DDOST--RP4-749H3.1	6	18	DDOST	1627	chr1:20987374:-	RP4-749H3.1	12778	chr1:20732762:-	ONLY_REF_SPLICE	YES	477	0	0.05	1	0.064	0.192	DDOST->chr1:20978270-20988000:-,dolichyl-diphosphooligosaccharide--protein_glycosyltransferase_non-catalytic_subunit,RP4-749H3.1->chr1:20687072-20757727:-	NCIH2029_LUNG	0.05	1	0.256	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	MT-ND5--MT-ATP8	9	4	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6092	34	0	0.28	0.096	0.0427	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0	0.28	0.1387	FALSE	43	37	8	105	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND1--MT-RNR2	9	1	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	29	0	0.26	1	0.096	0.0107	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2029_LUNG	0.26	1	0.1067	FALSE	114	26	4	85	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ATP8	9	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.096	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	1	1	0.096	FALSE	230	198	14	283	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ATP6--MT-CO1	4	17	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3194	26004	0.01	0	0.0427	0.1813	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2029_LUNG	0	0.01	0.224	FALSE	183	104	9	328	0	FALSE	ACH-000298
NCIH2029_LUNG	RP11-123O10.4--GRIP1	5	13	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	4	1	0.82	0.0533	0.1387	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2029_LUNG	0.82	1	0.192	FALSE	93	270	15	244	0	FALSE	ACH-000298
NCIH2029_LUNG	DSE--NT5DC1	4	14	DSE	4763	chr6:116601423:+	NT5DC1	39937	chr6:116565072:+	ONLY_REF_SPLICE	YES	55	39	0.25	0.32	0.0427	0.1493	LOCAL_REARRANGEMENT:+:[4676],DSE->chr6:116575336-116762424:+,dermatan_sulfate_epimerase,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	NCIH2029_LUNG	0.25	0.32	0.192	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ND4L	4	14	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	71	0	0.2	1	0.0427	0.1493	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2029_LUNG	0.2	1	0.192	FALSE	344	827	44	306	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND5--MT-ATP8	4	14	MT-ND5	2644	chrM:13980:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	1849	0	0.01	1	0.0427	0.1493	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0.01	1	0.192	FALSE	43	37	8	105	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-TA--MT-TC	5	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0.1067	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2029_LUNG	1	1	0.16	FALSE	462	80	0	856	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ATP6--MT-CO1	7	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9814	25072	0	0	0.0747	0.0107	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2029_LUNG	0	0	0.0854	FALSE	183	104	9	328	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ATP6--MT-CO1	7	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	9667	24526	0	0	0.0747	0.0107	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2029_LUNG	0	0	0.0854	FALSE	183	104	9	328	0	FALSE	ACH-000298
NCIH2029_LUNG	RP11-66N24.4--NKX2-1	7	1	RP11-66N24.4	3657	chr14:23983625:+	NKX2-1	16132	chr14:36988575:-	ONLY_REF_SPLICE	YES	8	324	0.5	0.02	0.0747	0.0107	RP11-66N24.4->chr14:23980969-24029987:+,NKX2-1->ArcherDX_panel,FoundationOne_panel,NK2_homeobox_1,Oncogene{Bushman},chr14:36985602-36990354:-	NCIH2029_LUNG	0.02	0.5	0.0854	TRUE	0	0	0	1	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ATP6--MT-CO1	6	3	MT-ATP6	1153	chrM:8679:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	11474	23483	0	0	0.064	0.032	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2029_LUNG	0	0	0.096	FALSE	183	104	9	328	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-TA--MT-TC	4	10	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0.1067	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2029_LUNG	1	1	0.1494	FALSE	462	80	0	856	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND1--MT-RNR2	6	1	MT-ND1	1085	chrM:3391:+	MT-RNR2	5034	chrM:1748:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.88	0.064	0.0107	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2029_LUNG	0.88	1	0.0747	FALSE	114	26	4	85	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ATP8	3	13	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	14823	0	0	1	0.032	0.1387	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0	1	0.1707	FALSE	231	217	16	283	0	FALSE	ACH-000298
NCIH2029_LUNG	NPM1P24--SET	6	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	19	950	0.27	0.01	0.064	0.0107	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2029_LUNG	0.01	0.27	0.0747	FALSE	0	0	0	434	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND5--MT-ATP8	4	7	MT-ND5	2667	chrM:14003:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	1333	427	0.01	0.03	0.0427	0.0747	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0.01	0.03	0.1174	FALSE	43	37	8	105	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14068	34	0	0.28	0.032	0.1067	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0	0.28	0.1387	FALSE	231	217	16	283	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	14624	0	0	1	0.032	0.1067	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0	1	0.1387	FALSE	231	217	16	283	0	FALSE	ACH-000298
NCIH2029_LUNG	PVT1--SNTB1	5	1	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	4	0	0.6	1	0.0533	0.0107	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH2029_LUNG	0.6	1	0.064	TRUE	0	0	0	25	0	FALSE	ACH-000298
NCIH2029_LUNG	GPC6--MYO16	2	12	GPC6	4326	chr13:94482798:+	MYO16	37142	chr13:109550364:+	ONLY_REF_SPLICE	YES	39	50	0.26	0.22	0.0213	0.128	GPC6->chr13:93879095-95059655:+,glypican_6,MYO16->chr13:109248500-109860355:+,myosin_XVI	NCIH2029_LUNG	0.22	0.26	0.1493	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ATP8	4	4	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	17660	648	0	0.01	0.0427	0.0427	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0	0.01	0.0854	FALSE	231	217	16	283	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	14886	1476	0	0.01	0.032	0.0853	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0	0.01	0.1173	FALSE	231	217	16	283	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND5--MT-ATP8	3	8	MT-ND5	2167	chrM:13503:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	4777	0	0	1	0.032	0.0853	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0	1	0.1173	FALSE	43	37	8	105	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2029_LUNG	1	1	0.0533	FALSE	499	1288	110	792	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2029_LUNG	1	1	0.0533	FALSE	462	80	0	856	0	FALSE	ACH-000298
NCIH2029_LUNG	STRN3--STXBP6	4	4	STRN3	1498	chr14:31495110:-	STXBP6	33298	chr14:25326363:-	ONLY_REF_SPLICE	YES	60	47	0.12	0.15	0.0427	0.0427	STRN3->chr14:31363005-31495607:-,striatin_3,STXBP6->chr14:25278862-25519503:-,syntaxin_binding_protein_6	NCIH2029_LUNG	0.12	0.15	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	ADCYAP1--RP11-78F17.1	4	3	ADCYAP1	4508	chr18:909587:+	RP11-78F17.1	13815	chr18:1133844:+	INCL_NON_REF_SPLICE	YES	175	0	0.04	1	0.0427	0.032	NEIGHBORS[64417],ADCYAP1->adenylate_cyclase_activating_polypeptide_1,chr18:904944-912173:+,RP11-78F17.1->chr18:976590-1174824:+	NCIH2029_LUNG	0.04	1	0.0747	FALSE	0	0	0	1	0	FALSE	ACH-000298
NCIH2029_LUNG	APP--MT-ND2	4	3	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	1907	4438	0	0	0.0427	0.032	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH2029_LUNG	0	0	0.0747	FALSE	0	1	0	51	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	14068	1893	0	0.01	0.032	0.0747	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0	0.01	0.1067	FALSE	231	217	16	283	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND6--MT-TE	3	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.0747	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2029_LUNG	1	1	0.1067	FALSE	499	1288	110	792	0	FALSE	ACH-000298
NCIH2029_LUNG	RP11-108K3.1--GLDN	4	3	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	2	1	0.78	0.0427	0.032	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH2029_LUNG	0.78	1	0.0747	FALSE	0	19	0	46	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND5--MT-ATP8	3	6	MT-ND5	2290	chrM:13626:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	NO	3318	1	0	0.9	0.032	0.064	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0	0.9	0.096	FALSE	43	37	8	105	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	15511	0	0	1	0.032	0.0533	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0	1	0.0853	FALSE	231	217	16	283	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	16077	0	0	1	0.032	0.0533	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0	1	0.0853	FALSE	231	217	16	283	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND5--MT-ND6	4	1	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	3239	1	0	0.0427	0.0107	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH2029_LUNG	0	1	0.0534	FALSE	26	124	4	93	0	FALSE	ACH-000298
NCIH2029_LUNG	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0427	0.0107	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2029_LUNG	1	1	0.0534	FALSE	515	4851	409	746	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	1	1	0.0427	FALSE	230	193	14	283	0	FALSE	ACH-000298
NCIH2029_LUNG	DSE--NT5DC1	2	7	DSE	4234	chr6:116600894:+	NT5DC1	39937	chr6:116565072:+	ONLY_REF_SPLICE	YES	52	39	0.15	0.19	0.0213	0.0747	LOCAL_REARRANGEMENT:+:[4676],DSE->chr6:116575336-116762424:+,dermatan_sulfate_epimerase,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	NCIH2029_LUNG	0.15	0.19	0.096	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	GDAP1--RP11-758M4.1	3	2	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	103	4	0.05	0.56	0.032	0.0213	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH2029_LUNG	0.05	0.56	0.0533	TRUE	7	28	0	43	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	NO	12081	25072	0	0	0.032	0.0213	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2029_LUNG	0	0	0.0533	FALSE	183	104	9	328	0	FALSE	ACH-000298
NCIH2029_LUNG	DDOST--RP4-749H3.1	1	9	DDOST	1627	chr1:20987374:-	RP4-749H3.1	18565	chr1:20704925:-	ONLY_REF_SPLICE	YES	477	9	0.02	0.53	0.0107	0.096	DDOST->chr1:20978270-20988000:-,dolichyl-diphosphooligosaccharide--protein_glycosyltransferase_non-catalytic_subunit,RP4-749H3.1->chr1:20687072-20757727:-	NCIH2029_LUNG	0.02	0.53	0.1067	TRUE	0	0	0	1	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-CO1--PCSK1	3	1	MT-CO1	1606	chrM:6509:+	PCSK1	17080	chr5:95743961:-	INCL_NON_REF_SPLICE	YES	22286	850	0	0	0.032	0.0107	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,PCSK1->chr5:95726119-95769847:-,proprotein_convertase_subtilisin/kexin_type_1	NCIH2029_LUNG	0	0	0.0427	FALSE	0	0	0	1	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND1--MT-RNR2	3	1	MT-ND1	1246	chrM:3552:+	MT-RNR2	5019	chrM:1733:+	INCL_NON_REF_SPLICE	YES	20	0	0.17	1	0.032	0.0107	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2029_LUNG	0.17	1	0.0427	FALSE	114	26	4	85	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	16240	1476	0	0	0.032	0.0107	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0	0	0.0427	FALSE	231	205	14	283	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	12051	0	0	1	0.032	0.0107	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	0	1	0.0427	FALSE	230	197	14	283	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5571	chrM:8558:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2029_LUNG	1	1	0.032	FALSE	231	204	14	283	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND5--MT-ND6	3	0	MT-ND5	2823	chrM:14159:+	MT-ND6	6285	chrM:14201:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH2029_LUNG	1	1	0.032	FALSE	26	124	4	93	0	FALSE	ACH-000298
NCIH2029_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2029_LUNG	1	1	0.032	FALSE	499	1288	110	792	0	FALSE	ACH-000298
NCIH2029_LUNG	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2029_LUNG	1	1	0.032	FALSE	292	1546	117	613	0	FALSE	ACH-000298
NCIH2029_LUNG	RP11-680G10.1--GSE1	2	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	28	1	0.15	0.0213	0.032	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2029_LUNG	0.15	1	0.0533	TRUE	465	1949	224	605	0	FALSE	ACH-000298
NCIH2029_LUNG	RP11-444D3.1--SOX5	2	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0.0213	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH2029_LUNG	1	1	0.0426	TRUE	477	1352	189	275	0	FALSE	ACH-000298
NCIH2029_LUNG	SSBP1--MGAM	2	2	SSBP1	9443	chr7:141450184:+	MGAM	20665	chr7:141705329:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0.0213	SSBP1->chr7:141438121-141487722:+,single_stranded_DNA_binding_protein_1,MGAM->chr7:141607613-141806547:+,maltase-glucoamylase	NCIH2029_LUNG	1	1	0.0426	TRUE	0	1	0	7	1	TRUE	ACH-000298
NCIH2029_LUNG	DCBLD1--FAM26F	2	1	DCBLD1	22082	chr6:117866760:+	FAM26F	31126	chr6:116784446:+	ONLY_REF_SPLICE	YES	29	27	0.09	0.1	0.0213	0.0107	DCBLD1->chr6:117774980-117891021:+,discoidin,_CUB_and_LCCL_domain_containing_1,FAM26F->chr6:116782533-116784934:+,family_with_sequence_similarity_26_member_F	NCIH2029_LUNG	0.09	0.1	0.032	TRUE	0	0	0	1	0	FALSE	ACH-000298
NCIH2029_LUNG	NKX2-1-AS1--ZFHX2	2	1	NKX2-1-AS1	1402	chr14:36988884:+	ZFHX2	11713	chr14:24004583:-	ONLY_REF_SPLICE	YES	0	49	1	0.06	0.0213	0.0107	NKX2-1-AS1->NKX2-1_antisense_RNA_1,chr14:36988483-36992221:+,ZFHX2->chr14:23990066-24025401:-,zinc_finger_homeobox_2	NCIH2029_LUNG	0.06	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	RP11-141M1.3--STARD13	2	1	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	NO	1	5	0.75	0.38	0.0213	0.0107	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NCIH2029_LUNG	0.38	0.75	0.032	FALSE	49	120	16	70	0	FALSE	ACH-000298
NCIH2029_LUNG	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0213	0.0107	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2029_LUNG	1	1	0.032	FALSE	192	492	57	212	0	FALSE	ACH-000298
NCIH2029_LUNG	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0.0107	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2029_LUNG	1	1	0.032	FALSE	467	2173	244	435	0	FALSE	ACH-000298
NCIH2029_LUNG	ANO9--MAFK	2	0	ANO9	1091	chr11:441921:-	MAFK	18014	chr7:1578785:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	ANO9->anoctamin_9,chr11:417933-442011:-,MAFK->Oncogene{Bushman},chr7:1570350-1582679:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_K	NCIH2029_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	DOCK4--ZYG11B	2	0	DOCK4	1310	chr7:111846157:-	ZYG11B	64090	chr1:53222130:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,ZYG11B->chr1:53192126-53293014:+,zyg-11_family_member_B,_cell_cycle_regulator	NCIH2029_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	HECTD4--VANGL1	2	0	HECTD4	18230	chr12:112701888:-	VANGL1	92589	chr1:116233740:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,VANGL1->VANGL_planar_cell_polarity_protein_1,chr1:116184574-116240845:+	NCIH2029_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	IST1--KDM4A	2	0	IST1	15609	chr16:71957283:+	KDM4A	23961	chr1:44118808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	IST1->IST1,_ESCRT-III_associated_factor,chr16:71879899-71962913:+,KDM4A->chr1:44115829-44171186:+,lysine_demethylase_4A	NCIH2029_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	NAA50--SPICE1	2	0	NAA50	1359	chr3:113464789:-	SPICE1	18285	chr3:113218429:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	NAA50->N(alpha)-acetyltransferase_50,_NatE_catalytic_subunit,chr3:113435307-113465147:-,SPICE1->chr3:113161565-113234034:-,spindle_and_centriole_associated_protein_1	NCIH2029_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	PPP2CA--EZH2	2	0	PPP2CA	9489	chr5:133534777:-	EZH2	31184	chr7:148512638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	PPP2CA->chr5:133530025-133561833:-,protein_phosphatase_2_catalytic_subunit_alpha,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	NCIH2029_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	RAB40C--TMEM8A	2	0	RAB40C	2077	chr16:640433:+	TMEM8A	17482	chr16:427848:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5]},GTEx_v2:{count=3;pct=0.03%;dist=Pancreas=1,Lung=1,Brain_-_Cerebellum=1},RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+,TMEM8A->chr16:420773-437113:-,transmembrane_protein_8A	NCIH2029_LUNG	1	1	0.0213	TRUE	6	8	0	5	0	FALSE	ACH-000298
NCIH2029_LUNG	RP11-155G15.2--RAB3GAP1	2	0	RP11-155G15.2	1071	chr5:96519373:+	RAB3GAP1	14650	chr2:135870721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	RP11-155G15.2->chr5:96519303-96772921:+,RAB3GAP1->RAB3_GTPase_activating_protein_catalytic_subunit_1,chr2:135809835-135933964:+	NCIH2029_LUNG	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000298
NCIH2029_LUNG	SHFM1--DLX6-AS1	2	0	SHFM1	1204	chr7:96339000:-	DLX6-AS1	31487	chr7:96598430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-	NCIH2029_LUNG	1	1	0.0213	TRUE	0	0	0	4	0	TRUE	ACH-000298
NCIH2029_LUNG	YWHAE--CRK	2	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NCIH2029_LUNG	1	1	0.0213	TRUE	6	50	7	115	0	FALSE	ACH-000298
NCIH2029_LUNG	RP11-108K3.1--GLDN	1	3	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	NO	1	2	0.8	0.67	0.0107	0.032	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH2029_LUNG	0.67	0.8	0.0427	FALSE	0	30	1	55	0	FALSE	ACH-000298
NCIH2029_LUNG	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0107	0.032	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH2029_LUNG	1	1	0.0427	TRUE	13	17	1	13	0	FALSE	ACH-000298
NCIH2029_LUNG	RP11-680G10.1--GSE1	1	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	4	1	0.5	0.0107	0.032	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2029_LUNG	0.5	1	0.0427	TRUE	458	1351	185	561	0	FALSE	ACH-000298
NCIH2029_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	2	43	0.6	0.07	0.0107	0.0213	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2029_LUNG	0.07	0.6	0.032	FALSE	16	356	14	466	0	FALSE	ACH-000298
NCIH2029_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	43	0.75	0.07	0.0107	0.0213	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2029_LUNG	0.07	0.75	0.032	FALSE	0	48	1	163	0	FALSE	ACH-000298
NCIH2029_LUNG	UVSSA--WHSC1	1	2	UVSSA	1924	chr4:1341977:+	WHSC1	27581	chr4:1902353:+	ONLY_REF_SPLICE	YES	25	44	0.11	0.06	0.0107	0.0213	UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH2029_LUNG	0.06	0.11	0.032	TRUE	0	0	0	1	0	FALSE	ACH-000298
NCIH2029_LUNG	EPHA6--TRAPPC9	1	1	EPHA6	4157	chr3:96706837:+	TRAPPC9	60371	chr8:141294120:-	ONLY_REF_SPLICE	YES	7	110	0.22	0.02	0.0107	0.0107	EPHA6->EPH_receptor_A6,chr3:96533425-97471304:+,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	NCIH2029_LUNG	0.02	0.22	0.0214	TRUE	0	0	0	1	0	FALSE	ACH-000298
NCIH2029_LUNG	FAM155A--FGD5-AS1	1	1	FAM155A	2054	chr13:108518030:-	FGD5-AS1	11749	chr3:14987661:-	ONLY_REF_SPLICE	YES	60	319	0.03	0.01	0.0107	0.0107	FAM155A->chr13:107820883-108519083:-,family_with_sequence_similarity_155_member_A,FGD5-AS1->FGD5_antisense_RNA_1,chr3:14961854-14989931:-	NCIH2029_LUNG	0.01	0.03	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000298
NCIH2029_LUNG	KCNQ5-IT1--KCNQ5	1	1	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	16	1	0.11	0.0107	0.0107	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	NCIH2029_LUNG	0.11	1	0.0214	FALSE	1	11	0	34	0	FALSE	ACH-000298
NCIH2029_LUNG	RNF212--IRX2	1	1	RNF212	6789	chr4:1090553:-	IRX2	25513	chr5:2749901:-	ONLY_REF_SPLICE	YES	88	9	0.02	0.18	0.0107	0.0107	RNF212->chr4:1050038-1107350:-,ring_finger_protein_212,IRX2->chr5:2745959-2752969:-,iroquois_homeobox_2	NCIH2029_LUNG	0.02	0.18	0.0214	TRUE	0	0	0	1	0	FALSE	ACH-000298
NCIH2029_LUNG	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0107	0.0107	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH2029_LUNG	1	1	0.0214	TRUE	0	4	1	7	4	TRUE	ACH-000298
NCIH2029_LUNG	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0107	0.0107	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH2029_LUNG	0.67	1	0.0214	TRUE	0	0	0	4	0	TRUE	ACH-000298
NCIH2029_LUNG	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0107	0.0107	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2029_LUNG	1	1	0.0214	FALSE	407	2205	196	549	0	FALSE	ACH-000298
M059K_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	69	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9648	0.2237	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	1.1885	TRUE	508	994	45	981	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	58	45	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	40	0	0.72	1	0.811	0.6292	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.72	1	1.4402	FALSE	21	45	1	60	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	56	18	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	110	0	0.4	1	0.783	0.2517	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.4	1	1.0347	FALSE	56	216	12	147	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	46	19	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	20	27	0.76	0.71	0.6432	0.2657	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	M059K_CENTRAL_NERVOUS_SYSTEM	0.71	0.76	0.9089	TRUE	181	1564	124	196	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	42	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5873	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.5873	TRUE	519	3926	326	965	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	35	5	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	34	1	0.54	0.4894	0.0699	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.54	1	0.5593	TRUE	347	1186	183	220	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	33	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4614	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.4614	TRUE	7	10	0	216	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	AL589743.1--RP11-536C10.17	32	0	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4474	0	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.4474	TRUE	0	33	0	45	33	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	AP000525.9--LA16c-60G3.6	32	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4474	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.4474	TRUE	0	42	0	133	42	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	JARID2--ZNF423	27	17	JARID2	5780	chr6:15410596:+	ZNF423	33009	chr16:49823457:-	ONLY_REF_SPLICE	YES	11	1	0.8	0.98	0.3775	0.2377	{Klijn_CCL:Brain=1},JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,ZNF423->Oncogene{Bushman},chr16:49521435-49891830:-,zinc_finger_protein_423	M059K_CENTRAL_NERVOUS_SYSTEM	0.8	0.98	0.6152	TRUE	0	0	0	1	0	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	13	32	PRR16	8644	chr5:120022405:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	80	0	0.36	1	0.1818	0.4474	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.36	1	0.6292	FALSE	21	45	1	60	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	15	1	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.2097	0.014	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.2237	TRUE	4	2	0	28	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	10	17	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	322	129	0.08	0.17	0.1398	0.2377	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	M059K_CENTRAL_NERVOUS_SYSTEM	0.08	0.17	0.3775	FALSE	76	19	3	26	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	13	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1818	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.1818	FALSE	499	1288	110	792	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	12	2	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.1678	0.028	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.1958	TRUE	6	15	3	35	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	6	12	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	356	129	0.05	0.12	0.0839	0.1678	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	M059K_CENTRAL_NERVOUS_SYSTEM	0.05	0.12	0.2517	FALSE	38	10	2	29	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	9	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1258	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.1258	FALSE	230	193	14	283	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	9	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1258	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.1258	TRUE	0	1	0	48	1	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	CEP152--FBN1	8	1	CEP152	23206	chr15:49044546:-	FBN1	46747	chr15:48830005:-	ONLY_REF_SPLICE	YES	14	315	0.39	0.03	0.1119	0.014	NEIGHBORS[67079],CEP152->centrosomal_protein_152,chr15:49005125-49103343:-,FBN1->chr15:48700503-48938046:-,fibrillin_1	M059K_CENTRAL_NERVOUS_SYSTEM	0.03	0.39	0.1259	FALSE	0	0	0	1	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	6	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0839	0.1258	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.2097	FALSE	499	1288	110	792	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	AL589743.1--RP11-536C10.17	7	3	AL589743.1	5091	chr14:19656224:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	512	0	0.02	1	0.0979	0.0419	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.1398	TRUE	0	4	0	3	4	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	AP000525.9--LA16c-60G3.6	7	3	AP000525.9	5082	chr22:16186811:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	227	0	0.04	1	0.0979	0.0419	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	M059K_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.1398	TRUE	0	3	0	6	3	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	7	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3220	0	0	1	0.0979	0.028	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	M059K_CENTRAL_NERVOUS_SYSTEM	0	1	0.1259	FALSE	13	9	0	364	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	7	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0979	0.014	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	M059K_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.1119	FALSE	292	1546	117	613	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	7	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0979	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.0979	FALSE	499	1288	110	792	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	6	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.56	1	0.0839	0.0559	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	M059K_CENTRAL_NERVOUS_SYSTEM	0.56	1	0.1398	FALSE	125	705	46	456	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	5	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3187	0	0	1	0.0699	0.0419	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	M059K_CENTRAL_NERVOUS_SYSTEM	0	1	0.1118	FALSE	13	9	0	364	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	1	19	PRR16	6887	chr5:119954260:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	NO	122	0	0.14	1	0.014	0.2657	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.2797	FALSE	0	2	0	14	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	1	19	PRR16	5763	chr5:119952887:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	122	0	0.14	1	0.014	0.2657	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.2797	FALSE	0	3	0	8	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	4	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	33	44	0.2	0.15	0.0559	0.0559	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	M059K_CENTRAL_NERVOUS_SYSTEM	0.15	0.2	0.1118	TRUE	267	562	48	632	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	5	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0699	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.0699	FALSE	16	356	14	466	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0699	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.0699	TRUE	465	1949	224	605	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	5	0	XXbac-BPG252P9.9	1179	chr6:30691476:-	TUBBP2	4914	chr13:41959179:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.0699	TRUE	0	1	0	48	1	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	5	0	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0699	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.0699	TRUE	0	1	0	48	1	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	4	4	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	YES	4810	0	0	1	0.0559	0.0559	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	M059K_CENTRAL_NERVOUS_SYSTEM	0	1	0.1118	TRUE	0	1	0	48	1	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	JARID2--ZNF423	3	7	JARID2	3478	chr6:15374483:+	ZNF423	33009	chr16:49823457:-	ONLY_REF_SPLICE	YES	5	1	0.67	0.91	0.0419	0.0979	{Klijn_CCL:Brain=1},JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,ZNF423->Oncogene{Bushman},chr16:49521435-49891830:-,zinc_finger_protein_423	M059K_CENTRAL_NERVOUS_SYSTEM	0.67	0.91	0.1398	TRUE	0	0	0	1	0	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	CEP152--FBN1	4	2	CEP152	24374	chr15:49040640:-	FBN1	46747	chr15:48830005:-	ONLY_REF_SPLICE	YES	13	315	0.32	0.02	0.0559	0.028	NEIGHBORS[67079],CEP152->centrosomal_protein_152,chr15:49005125-49103343:-,FBN1->chr15:48700503-48938046:-,fibrillin_1	M059K_CENTRAL_NERVOUS_SYSTEM	0.02	0.32	0.0839	FALSE	0	0	0	1	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	3	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	11	0	0.45	1	0.0419	0.0839	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	M059K_CENTRAL_NERVOUS_SYSTEM	0.45	1	0.1258	FALSE	164	806	69	479	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	RP4-565E6.1--HYDIN	4	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0559	0.028	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.0839	TRUE	456	1387	91	133	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	4	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0559	0.014	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.0699	TRUE	0	7	2	11	5	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0559	0.014	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.0699	TRUE	458	1351	185	561	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	JARID2--ZNF423	1	12	JARID2	5780	chr6:15410596:+	ZNF423	35134	chr16:49764882:-	ONLY_REF_SPLICE	YES	11	2	0.54	0.87	0.014	0.1678	{Klijn_CCL:Brain=1},JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,ZNF423->Oncogene{Bushman},chr16:49521435-49891830:-,zinc_finger_protein_423	M059K_CENTRAL_NERVOUS_SYSTEM	0.54	0.87	0.1818	TRUE	0	0	0	1	0	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	VAPB--APCDD1L-AS1	3	4	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	31664	chr20:57193796:+	ONLY_REF_SPLICE	YES	84	2	0.08	0.78	0.0419	0.0559	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.08	0.78	0.0978	FALSE	2	12	0	8	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	VIM--MT-ATP8	4	0	VIM	2101	chr10:17271358:+	MT-ATP8	12320	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0559	0	VIM->chr10:17270258-17279592:+,vimentin,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.0559	FALSE	0	0	0	2	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	JARID2--ZNF423	2	7	JARID2	3478	chr6:15374483:+	ZNF423	31938	chr16:49856649:-	ONLY_REF_SPLICE	YES	5	1	0.64	0.9	0.028	0.0979	{Klijn_CCL:Brain=1},JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,ZNF423->Oncogene{Bushman},chr16:49521435-49891830:-,zinc_finger_protein_423	M059K_CENTRAL_NERVOUS_SYSTEM	0.64	0.9	0.1259	TRUE	0	0	0	1	0	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	10808	1	0	0.83	0.0419	0.028	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	M059K_CENTRAL_NERVOUS_SYSTEM	0	0.83	0.0699	FALSE	231	217	16	283	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	2	5	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	17	27	0.29	0.21	0.028	0.0699	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	M059K_CENTRAL_NERVOUS_SYSTEM	0.21	0.29	0.0979	TRUE	105	90	7	93	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.0419	TRUE	0	5	0	18	5	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-CO2	3	0	MT-ND4	1496	chrM:11255:+	MT-CO2	5511	chrM:7718:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.0419	FALSE	5	1	0	19	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	VAPB--APCDD1L-AS1	2	4	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	30269	chr20:57148632:+	ONLY_REF_SPLICE	YES	84	14	0.07	0.3	0.028	0.0559	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.07	0.3	0.0839	FALSE	0	1	0	1	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	1	6	COL8A1	12080	chr3:99463865:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	425	129	0.02	0.05	0.014	0.0839	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	M059K_CENTRAL_NERVOUS_SYSTEM	0.02	0.05	0.0979	FALSE	4	4	0	17	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	2	2	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	7741	chr5:95644428:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.028	0.028	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.056	TRUE	1	1	0	7	1	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	1	5	CTD-2337A12.1	7488	chr5:95966789:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	NO	0	34	1	0.15	0.014	0.0699	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.0839	TRUE	18	50	10	12	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	JARID2--ZNF423	1	5	JARID2	3478	chr6:15374483:+	ZNF423	35134	chr16:49764882:-	ONLY_REF_SPLICE	YES	5	2	0.55	0.75	0.014	0.0699	{Klijn_CCL:Brain=1},JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,ZNF423->Oncogene{Bushman},chr16:49521435-49891830:-,zinc_finger_protein_423	M059K_CENTRAL_NERVOUS_SYSTEM	0.55	0.75	0.0839	TRUE	0	0	0	1	0	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	MB21D2--FGF12	2	1	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	30	8	0.09	0.27	0.028	0.014	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	M059K_CENTRAL_NERVOUS_SYSTEM	0.09	0.27	0.042	FALSE	0	17	0	46	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0.014	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.042	FALSE	515	4851	409	746	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	VAPB--APCDD1L-AS1	1	5	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	25288	chr20:57098225:+	ONLY_REF_SPLICE	YES	84	41	0.07	0.13	0.014	0.0699	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.07	0.13	0.0839	FALSE	0	1	0	5	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	C14orf105--PTPN2	2	0	C14orf105	8353	chr14:57942300:-	PTPN2	18713	chr18:12859253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=16;pct=0.18%;dist=Thyroid=2,Adipose_-_Subcutaneous=2,Brain_-_Putamen_(basal_ganglia)=1,Stomach=1,Artery_-_Coronary=1,Liver=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Brain_-_Cerebellar_Hemisphere=1,Spleen=1},C14orf105->chr14:57936019-57960585:-,chromosome_14_open_reading_frame_105,PTPN2->chr18:12785477-12929642:-,protein_tyrosine_phosphatase,_non-receptor_type_2	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.028	TRUE	5	20	0	2	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	GRB14--SCN7A	2	0	GRB14	3001	chr2:165476197:-	SCN7A	29944	chr2:167313586:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	GRB14->chr2:165349322-165478358:-,growth_factor_receptor_bound_protein_14,SCN7A->chr2:167260083-167350757:-,sodium_voltage-gated_channel_alpha_subunit_7	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	3267	chr5:95654248:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	34	1	0.06	0.014	0.014	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.028	TRUE	0	4	0	5	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	DMRTA1--RP11-399D6.2	1	1	DMRTA1	1892	chr9:22447731:+	RP11-399D6.2	11667	chr9:22674442:+	ONLY_REF_SPLICE	YES	10	1	0.17	0.67	0.014	0.014	DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+,RP11-399D6.2->chr9:22646199-22824212:+	M059K_CENTRAL_NERVOUS_SYSTEM	0.17	0.67	0.028	TRUE	0	1	0	4	1	TRUE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	EDIL3--HAPLN1	1	1	EDIL3	2615	chr5:83549902:-	HAPLN1	27143	chr5:82969368:-	ONLY_REF_SPLICE	YES	1306	792	0	0	0.014	0.014	EDIL3->EGF_like_repeats_and_discoidin_domains_3,chr5:83236373-83680611:-,HAPLN1->Oncogene{Bushman},chr5:82933624-83017432:-,hyaluronan_and_proteoglycan_link_protein_1	M059K_CENTRAL_NERVOUS_SYSTEM	0	0	0.028	FALSE	0	0	0	1	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	MYH9--LGALS1	1	1	MYH9	28650	chr22:36692889:-	LGALS1	47469	chr22:38074490:+	ONLY_REF_SPLICE	YES	1348	3356	0	0	0.014	0.014	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	M059K_CENTRAL_NERVOUS_SYSTEM	0	0	0.028	FALSE	0	0	0	1	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	11	2	0.15	0.5	0.014	0.014	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	M059K_CENTRAL_NERVOUS_SYSTEM	0.15	0.5	0.028	FALSE	8	57	1	47	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	PROSC--CHMP1A	1	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	75	241	0.03	0.01	0.014	0.014	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	M059K_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.028	FALSE	13	55	3	29	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.014	0.014	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	M059K_CENTRAL_NERVOUS_SYSTEM	1	1	0.028	FALSE	467	2173	244	435	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	TEAD1--PARVA	1	1	TEAD1	4496	chr11:12785981:+	PARVA	32787	chr11:12495292:+	ONLY_REF_SPLICE	YES	100	301	0.02	0.01	0.014	0.014	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	M059K_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.028	FALSE	3	5	0	10	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	THBS1--CDH2	1	1	THBS1	1150	chr15:39873429:+	CDH2	24975	chr18:25727748:-	ONLY_REF_SPLICE	YES	2159	281	0	0.01	0.014	0.014	THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,CDH2->cadherin_2,chr18:25530930-25757410:-	M059K_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.028	FALSE	0	0	0	1	0	FALSE	ACH-000152
M059K_CENTRAL_NERVOUS_SYSTEM	TRPM7--SPPL2A	1	1	TRPM7	1285	chr15:50978728:-	SPPL2A	48883	chr15:51041943:-	ONLY_REF_SPLICE	YES	37	40	0.05	0.05	0.014	0.014	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:-:[20494],TRPM7->chr15:50844670-50979012:-,transient_receptor_potential_cation_channel_subfamily_M_member_7,SPPL2A->chr15:50999506-51058005:-,signal_peptide_peptidase_like_2A	M059K_CENTRAL_NERVOUS_SYSTEM	0.05	0.05	0.028	TRUE	0	0	1	1	0	FALSE	ACH-000152
TO175T_FIBROBLAST	MT-ND6--MT-ND5	41	0	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5319	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	TO175T_FIBROBLAST	1	1	0.5319	FALSE	101	855	57	72	0	FALSE	ACH-000125
TO175T_FIBROBLAST	TIMM23B--LINC00843	29	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3762	0.1557	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TO175T_FIBROBLAST	1	1	0.5319	TRUE	508	994	45	981	0	FALSE	ACH-000125
TO175T_FIBROBLAST	TIMM23--RP11-464F9.1	18	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	70	0	0.21	1	0.2335	0.013	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TO175T_FIBROBLAST	0.21	1	0.2465	TRUE	519	3926	326	965	0	FALSE	ACH-000125
TO175T_FIBROBLAST	COL1A1--FN1	4	51	COL1A1	12966	chr17:48266809:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	7773	4013	0.01	0.01	0.0519	0.6617	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	TO175T_FIBROBLAST	0.01	0.01	0.7136	TRUE	0	0	0	17	0	FALSE	ACH-000125
TO175T_FIBROBLAST	COL1A1--FN1	4	50	COL1A1	12718	chr17:48267057:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	8600	4013	0.01	0.01	0.0519	0.6487	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	TO175T_FIBROBLAST	0.01	0.01	0.7006	TRUE	0	0	0	17	0	FALSE	ACH-000125
TO175T_FIBROBLAST	MT-TA--MT-TC	13	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1687	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TO175T_FIBROBLAST	1	1	0.1687	FALSE	462	80	0	856	0	FALSE	ACH-000125
TO175T_FIBROBLAST	MT-ND6--MT-TE	12	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1557	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TO175T_FIBROBLAST	1	1	0.1557	FALSE	499	1288	110	792	0	FALSE	ACH-000125
TO175T_FIBROBLAST	COL1A1--FN1	3	35	COL1A1	13246	chr17:48266529:-	FN1	41963	chr2:216269255:-	INCL_NON_REF_SPLICE	NO	7795	4711	0	0.01	0.0389	0.4541	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	TO175T_FIBROBLAST	0	0.01	0.493	FALSE	0	0	0	2	0	FALSE	ACH-000125
TO175T_FIBROBLAST	COL1A1--FN1	3	30	COL1A1	15650	chr17:48264125:-	FN1	58080	chr2:216243979:-	INCL_NON_REF_SPLICE	YES	6260	5621	0.01	0.01	0.0389	0.3892	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	TO175T_FIBROBLAST	0.01	0.01	0.4281	TRUE	0	0	0	18	0	FALSE	ACH-000125
TO175T_FIBROBLAST	MT-ND6--MT-ND5	8	3	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	847	1	0.01	0.1038	0.0389	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	TO175T_FIBROBLAST	0.01	1	0.1427	FALSE	101	855	57	72	0	FALSE	ACH-000125
TO175T_FIBROBLAST	COL1A1--FN1	3	21	COL1A1	13512	chr17:48266263:-	FN1	56549	chr2:216245510:-	INCL_NON_REF_SPLICE	NO	6746	6784	0	0	0.0389	0.2725	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	TO175T_FIBROBLAST	0	0	0.3114	FALSE	0	0	0	3	0	FALSE	ACH-000125
TO175T_FIBROBLAST	KANSL1--ARL17B	7	5	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	8	12	0.6	0.5	0.0908	0.0649	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	TO175T_FIBROBLAST	0.5	0.6	0.1557	TRUE	181	1564	124	196	0	FALSE	ACH-000125
TO175T_FIBROBLAST	COL1A1--FN1	3	18	COL1A1	13456	chr17:48266319:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	6250	6840	0	0	0.0389	0.2335	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	TO175T_FIBROBLAST	0	0	0.2724	TRUE	0	0	0	16	0	FALSE	ACH-000125
TO175T_FIBROBLAST	MT-ND6--MT-TE	5	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0649	0.0519	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TO175T_FIBROBLAST	0.9	1	0.1168	FALSE	499	1288	110	792	0	FALSE	ACH-000125
TO175T_FIBROBLAST	MT-CO3--MT-ATP6	4	6	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.91	0.0519	0.0778	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TO175T_FIBROBLAST	0.91	1	0.1297	FALSE	189	492	56	216	0	FALSE	ACH-000125
TO175T_FIBROBLAST	RP11-680G10.1--GSE1	5	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0649	0.013	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TO175T_FIBROBLAST	0.86	1	0.0779	TRUE	465	1949	224	605	0	FALSE	ACH-000125
TO175T_FIBROBLAST	MT-ND6--MT-ND5	5	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	TO175T_FIBROBLAST	1	1	0.0649	FALSE	101	855	57	72	0	FALSE	ACH-000125
TO175T_FIBROBLAST	MT-ND6--MT-ND5	5	0	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	TO175T_FIBROBLAST	1	1	0.0649	FALSE	101	855	57	72	0	FALSE	ACH-000125
TO175T_FIBROBLAST	MT-ND6--MT-ND5	4	0	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	TO175T_FIBROBLAST	1	1	0.0519	FALSE	101	855	57	72	0	FALSE	ACH-000125
TO175T_FIBROBLAST	MT-ND6--MT-ND5	3	3	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	752	1	0.01	0.0389	0.0389	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	TO175T_FIBROBLAST	0.01	1	0.0778	FALSE	101	855	57	72	0	FALSE	ACH-000125
TO175T_FIBROBLAST	BRPF3--THRAP3	3	1	BRPF3	4356	chr6:36169547:+	THRAP3	28223	chr1:36754661:+	ONLY_REF_SPLICE	YES	19	28	0.17	0.12	0.0389	0.013	BRPF3->bromodomain_and_PHD_finger_containing_3,chr6:36164521-36200567:+,THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3	TO175T_FIBROBLAST	0.12	0.17	0.0519	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	NSD1--ADM	3	0	NSD1	36792	chr5:176722196:+	ADM	46758	chr11:10328172:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,ADM->adrenomedullin,chr11:10326227-10328944:+	TO175T_FIBROBLAST	1	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	PTBP1--MFGE8	3	0	PTBP1	10951	chr19:810922:+	MFGE8	18757	chr15:89453147:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1,MFGE8->chr15:89441916-89456642:-,milk_fat_globule-EGF_factor_8_protein	TO175T_FIBROBLAST	1	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	ABI3BP--KTN1	2	0	ABI3BP	52773	chr3:100515253:-	KTN1	109395	chr14:56133959:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	ABI3BP->ABI_family_member_3_binding_protein,chr3:100468000-100712359:-,KTN1->Oncogene{Bushman},chr14:56025790-56168244:+,kinectin_1	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	ADAMTS2--FBXW11	2	0	ADAMTS2	2636	chr5:178770768:-	FBXW11	38741	chr5:171337801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	ADAMTS2->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_2,chr5:178537852-178772431:-,FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	APOLD1--SPECC1L	2	0	APOLD1	1180	chr12:12879030:+	SPECC1L	39640	chr22:24765186:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+,SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	ARHGEF10L--SKI	2	0	ARHGEF10L	31309	chr1:17991090:+	SKI	45127	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	ARHGEF10L->Rho_guanine_nucleotide_exchange_factor_10_like,chr1:17866330-18024369:+,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	CTSD--NCOA5	2	0	CTSD	8746	chr11:1775033:-	NCOA5	15001	chr20:44699175:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	CTSD->cathepsin_D,chr11:1773982-1785222:-,NCOA5->chr20:44689624-44718591:-,nuclear_receptor_coactivator_5	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	DAGLB--SAMD3	2	0	DAGLB	1224	chr7:6523598:-	SAMD3	32741	chr6:130505768:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	DAGLB->chr7:6448757-6523821:-,diacylglycerol_lipase_beta,SAMD3->chr6:130465460-130686570:-,sterile_alpha_motif_domain_containing_3	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	DFFA--TARDBP	2	0	DFFA	2366	chr1:10529234:-	TARDBP	22014	chr1:11082181:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	DFFA->DNA_fragmentation_factor_subunit_alpha,chr1:10516579-10532583:-,TARDBP->TAR_DNA_binding_protein,chr1:11072414-11085796:+	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	FBLN1--GNAS	2	0	FBLN1	15741	chr22:45939406:+	GNAS	48923	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	FBLN1->Oncogene{Bushman},chr22:45898118-45997015:+,fibulin_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	FOSB--AKT2	2	0	FOSB	1718	chr19:45971970:+	AKT2	21522	chr19:40771258:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	FOSB->FosB_proto-oncogene,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr19:45971253-45978437:+,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	FOSB--HNRNPF	2	0	FOSB	1718	chr19:45971970:+	HNRNPF	14229	chr10:43892038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	FOSB->FosB_proto-oncogene,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr19:45971253-45978437:+,HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	GRIN2D--RP11-1407O15.2	2	0	GRIN2D	4173	chr19:48908610:+	RP11-1407O15.2	34411	chr17:36347082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	GRIN2D->Oncogene{Bushman},chr19:48898132-48948188:+,glutamate_ionotropic_receptor_NMDA_type_subunit_2D,RP11-1407O15.2->chr17:36337717-36421858:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	HMGN2--ACTB	2	0	HMGN2	1178	chr1:26799118:+	ACTB	11877	chr7:5569294:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	HMGN2->chr1:26798941-26802463:+,high_mobility_group_nucleosomal_binding_domain_2,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	HOXD3--TRIB3	2	0	HOXD3	1388	chr2:177001727:+	TRIB3	19203	chr20:368655:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	HOXD3->chr2:177001340-177037830:+,homeobox_D3,TRIB3->chr20:361261-378203:+,tribbles_pseudokinase_3	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	LRRC8A--SSU72	2	0	LRRC8A	3925	chr9:131648400:+	SSU72	15500	chr1:1500296:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	LRRC8A->chr9:131644391-131680318:+,leucine-rich_repeat_containing_8_family_member_A,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	MSRB3--LEMD3	2	0	MSRB3	1223	chr12:65672645:+	LEMD3	25573	chr12:65632282:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	LOCAL_REARRANGEMENT:+:[30316],MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3,LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	NAA60--MIR4435-1HG	2	0	NAA60	1084	chr16:3415182:+	MIR4435-1HG	35836	chr2:112125152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	NAA60->N(alpha)-acetyltransferase_60,_NatF_catalytic_subunit,chr16:3415099-3536960:+,chr16:3493611-3536963:+,MIR4435-1HG->chr2:111953927-112252677:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	NR3C1--YIPF5	2	0	NR3C1	10508	chr5:142779221:-	YIPF5	28139	chr5:143545168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	NR3C1->chr5:142657496-142815077:-,nuclear_receptor_subfamily_3_group_C_member_1,YIPF5->Yip1_domain_family_member_5,chr5:143537723-143550278:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	OAZ1--CDC42EP1	2	0	OAZ1	1259	chr19:2269743:+	CDC42EP1	11510	chr22:37962079:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,CDC42EP1->CDC42_effector_protein_1,Oncogene{Bushman},chr22:37956454-37965412:+	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	PPP1R12A--PPIL6	2	0	PPP1R12A	15835	chr12:80201006:-	PPIL6	44285	chr6:109740446:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	PPP1R12A->chr12:80167343-80329240:-,protein_phosphatase_1_regulatory_subunit_12A,PPIL6->chr6:109711418-109762374:-,peptidylprolyl_isomerase_like_6	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	PRDM15--PPP2R4	2	0	PRDM15	1213	chr21:43299379:-	PPP2R4	57045	chr9:131904724:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	PRDM15->PR_domain_15,chr21:43218385-43299591:-,PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	QRSL1--RTN4	2	0	QRSL1	1128	chr6:107077580:+	RTN4	18692	chr2:55307775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	QRSL1->chr6:107077453-107116292:+,glutaminyl-tRNA_synthase_(glutamine-hydrolyzing)-like_1,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	RP11-1055B8.6--WDR1	2	0	RP11-1055B8.6	2545	chr17:79373717:+	WDR1	29204	chr4:10077108:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	RP11-1055B8.6->chr17:79369275-79375658:+,WDR1->WD_repeat_domain_1,chr4:10075963-10118573:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	RUSC2--DCAKD	2	0	RUSC2	1046	chr9:35490169:+	DCAKD	18665	chr17:43112367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	RUSC2->RUN_and_SH3_domain_containing_2,chr9:35490124-35561895:+,DCAKD->chr17:43100708-43138473:-,dephospho-CoA_kinase_domain_containing	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	TANC1--N4BP2L2	2	0	TANC1	26696	chr2:160075872:+	N4BP2L2	48073	chr13:33096407:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	TGFBR3--SEP15	2	0	TGFBR3	15726	chr1:92224170:-	SEP15	43198	chr1:87329288:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	TGFBR3->Oncogene{Bushman},chr1:92145902-92371892:-,transforming_growth_factor_beta_receptor_3,SEP15->chr1:87328132-87380107:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	UGCG--EXT2	2	0	UGCG	2690	chr9:114677026:+	EXT2	20527	chr11:44129233:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+,EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	USP34--SNX14	2	0	USP34	27982	chr2:61523935:-	SNX14	94078	chr6:86251761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,SNX14->chr6:86215214-86303874:-,sorting_nexin_14	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	VAV2--COL5A1	2	0	VAV2	2729	chr9:136804225:-	COL5A1	48428	chr9:137619112:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	WIPI1--C6orf165	2	0	WIPI1	11947	chr17:66424970:-	C6orf165	39226	chr6:88210876:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	WIPI1->WD_repeat_domain,_phosphoinositide_interacting_1,chr17:66417089-66453654:-,C6orf165->chr6:88117730-88221352:+	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	ZBTB4--TIPARP	2	0	ZBTB4	1260	chr17:7387323:-	TIPARP	17895	chr3:156395446:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	ZBTB4->chr17:7362685-7387582:-,zinc_finger_and_BTB_domain_containing_4,TIPARP->TCDD_inducible_poly(ADP-ribose)_polymerase,chr3:156391024-156424559:+	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	ZNF106--COBLL1	2	0	ZNF106	10360	chr15:42740270:-	COBLL1	67118	chr2:165542542:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	ZNF106->chr15:42705021-42783321:-,zinc_finger_protein_106,COBLL1->chr2:165510134-165700189:-,cordon-bleu_WH2_repeat_protein_like_1	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	ZSCAN5A--CTD-2583A14.9	2	0	ZSCAN5A	6325	chr19:56824652:-	CTD-2583A14.9	29343	chr19:58388410:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0259	0	PROTCLUST,ZSCAN5A->chr19:56732681-56879752:-,zinc_finger_and_SCAN_domain_containing_5A,CTD-2583A14.9->chr19:58388133-58427959:-	TO175T_FIBROBLAST	1	1	0.0259	TRUE	0	0	0	1	0	TRUE	ACH-000125
TO175T_FIBROBLAST	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.013	0.0259	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TO175T_FIBROBLAST	1	1	0.0389	TRUE	458	1351	185	561	0	FALSE	ACH-000125
TO175T_FIBROBLAST	RP1-34H18.1--NAV3	1	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.013	0.013	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	TO175T_FIBROBLAST	0.67	1	0.026	TRUE	254	575	65	124	0	FALSE	ACH-000125
TO175T_FIBROBLAST	SERPINE2--ANXA2	1	1	SERPINE2	10173	chr2:224856520:-	ANXA2	33305	chr15:60678285:-	ONLY_REF_SPLICE	YES	1612	126	0	0.02	0.013	0.013	SERPINE2->chr2:224839829-224904036:-,serpin_family_E_member_2,ANXA2->annexin_A2,chr15:60639333-60695082:-	TO175T_FIBROBLAST	0	0.02	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000125
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DPH7--PTP4A3	167	0	DPH7	1297	chr9:140473091:-	PTP4A3	14726	chr8:142431487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	3.2218	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:10=pct:2.7],Heart=[count:7=pct:2.8],Pituitary=[count:4=pct:7.7],Nerve=[count:2=pct:1.2],Esophagus=[count:2=pct:0.5],Colon=[count:2=pct:1.0],Lung=[count:2=pct:1.2],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Kidney=[count:1=pct:7.1],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},GTEx_v2:{count=46;pct=0.53%;dist=Artery_-_Tibial=9,Heart_-_Atrial_Appendage=9,Pituitary=6,Cells_-_EBV-transformed_lymphocytes=5,Artery_-_Aorta=3,Lung=2,Artery_-_Coronary=2,Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hypothalamus=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1,Testis=1},DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7,PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	3.2218	TRUE	29	213	5	17	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	69	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3312	0.328	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.6592	TRUE	508	994	45	981	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	45	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	199	7	0.19	0.87	0.8681	0.0579	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.87	0.926	TRUE	519	3926	326	965	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--KLHL20	26	21	RABGAP1L	18286	chr1:174363283:+	KLHL20	56695	chr1:173702852:+	ONLY_REF_SPLICE	YES	209	32	0.18	0.59	0.5016	0.4051	{Klijn_CCL:Lung=1},RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,KLHL20->chr1:173684080-173755840:+,kelch_like_family_member_20	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.59	0.9067	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	29	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5595	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5595	TRUE	0	0	0	518	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	28	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5402	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5402	FALSE	369	2501	205	193	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV16--TRAC	4	93	TRAV16	1046	chr14:22458780:+	TRAC	4444	chr14:23016447:+	ONLY_REF_SPLICE	YES	278	0	0.26	1	0.0772	1.7942	HGNC_GENEFAM,TRAV16->T_cell_receptor_alpha_variable_16,chr14:22458735-22459177:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	1.8714	TRUE	1	12	0	1	12	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	23	11	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4437	0.2122	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6559	TRUE	477	1352	189	275	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	14	17	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	47	29	0.4	0.52	0.2701	0.328	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.52	0.5981	TRUE	267	562	48	632	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	10	11	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1929	0.2122	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4051	FALSE	369	2501	205	193	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	9	7	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1736	0.135	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3086	FALSE	369	2501	205	193	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	10	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1929	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1929	FALSE	231	205	14	283	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	7	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	46	29	0.28	0.38	0.135	0.2122	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.38	0.3472	TRUE	267	562	48	632	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--KLHL20	8	7	RABGAP1L	17135	chr1:174340210:+	KLHL20	56695	chr1:173702852:+	ONLY_REF_SPLICE	YES	273	32	0.05	0.32	0.1543	0.135	{Klijn_CCL:Lung=1},RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,KLHL20->chr1:173684080-173755840:+,kelch_like_family_member_20	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.32	0.2893	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	9	0	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1736	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1736	TRUE	0	1	0	48	1	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-565E6.1--HYDIN	7	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.135	0.0579	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1929	TRUE	456	1387	91	133	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	3	18	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0.3473	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4052	FALSE	369	2501	205	193	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--KLHL20	5	4	RABGAP1L	18286	chr1:174363283:+	KLHL20	58496	chr1:173720903:+	ONLY_REF_SPLICE	YES	209	37	0.04	0.2	0.0965	0.0772	{Klijn_CCL:Lung=1},RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,KLHL20->chr1:173684080-173755840:+,kelch_like_family_member_20	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.2	0.1737	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	5	3	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0965	0.0579	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1544	FALSE	369	2501	205	193	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	3	11	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0.2122	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2701	FALSE	369	2501	205	193	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	2	11	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0.2122	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2508	TRUE	160	277	29	98	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	4	2	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	NO	2710	0	0	1	0.0772	0.0386	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1158	FALSE	0	1	0	48	1	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOR2--UBC	4	1	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	706	36	0.01	0.12	0.0772	0.0193	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.12	0.0965	FALSE	52	148	13	33	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	2	9	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0.1736	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2122	TRUE	274	363	69	150	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDLBP--PASK	4	0	HDLBP	2464	chr2:242254985:-	PASK	57319	chr2:242054828:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0772	0	NEIGHBORS[77000],HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein,PASK->PAS_domain_containing_serine/threonine_kinase,chr2:242045514-242089679:-	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0772	FALSE	0	0	0	3	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0772	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0772	FALSE	230	198	14	283	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0772	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0772	FALSE	369	2501	205	193	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0772	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0772	FALSE	369	2501	205	193	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0772	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0772	TRUE	0	0	0	434	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1083	chr6:30691572:-	TUBBP2	4900	chr13:41959193:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0772	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0772	TRUE	0	1	0	48	1	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1068	chr6:30691587:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0772	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0772	TRUE	0	1	0	48	1	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1179	chr6:30691476:-	TUBBP2	4914	chr13:41959179:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0772	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0772	TRUE	0	1	0	48	1	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	3	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0579	0.0193	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0772	FALSE	46	201	11	112	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B2M--GNAS	3	0	B2M	1137	chr15:45003811:+	GNAS	25752	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0579	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Whole_Blood=[count:8=pct:6.1],Blood=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6],Lung=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=18;pct=0.21%;dist=Whole_Blood=9,Lung=3,Pancreas=1,Minor_Salivary_Gland=1,Thyroid=1,Cells_-_EBV-transformed_lymphocytes=1,Muscle_-_Skeletal=1,Colon_-_Transverse=1},B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0579	TRUE	14	13	1	7	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0579	FALSE	183	104	9	328	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0579	FALSE	230	193	14	283	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0579	FALSE	230	193	14	283	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--RPL3	3	0	RCC1	2175	chr1:28834672:+	RPL3	20675	chr22:39714597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0579	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0579	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1184	chr6:30691471:-	TUBBP2	4919	chr13:41959174:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0579	TRUE	0	1	0	48	1	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--GNAS	2	0	C17orf76-AS1	1593	chr17:16342728:+	GNAS	29039	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	C17orf76-AS1->chr17:16342136-16381992:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	4	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--ITFG1	2	0	C17orf76-AS1	1593	chr17:16342728:+	ITFG1	36548	chr16:47271919:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	C17orf76-AS1->chr17:16342136-16381992:+,ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	347	1186	183	220	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS5--MAP2K5	2	0	GAS5	3355	chr1:173835666:-	MAP2K5	37802	chr15:68061940:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding),MAP2K5->Oncogene{Bushman},chr15:67835047-68099461:+,mitogen-activated_protein_kinase_kinase_5	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTX3--PSMA1	2	0	MTX3	3798	chr5:79284285:-	PSMA1	21614	chr11:14535245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	MTX3->chr5:79275584-79287082:-,metaxin_3,PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--PSMG3	2	0	RCC1	2175	chr1:28834672:+	PSMG3	20523	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	2	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--RPL3	2	0	RCC1	2175	chr1:28834672:+	RPL3	21638	chr22:39713634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SGSM2--EXT2	2	0	SGSM2	2324	chr17:2246914:+	EXT2	26490	chr11:44129233:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	SGSM2->chr17:2240792-2284352:+,small_G_protein_signaling_modulator_2,EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	62	24	1	171	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMLHE--BRCC3	2	0	TMLHE	2332	chrX:154842453:-	BRCC3	24413	chrX:154344332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0386	0	TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,BRCC3->BRCA1/BRCA2-containing_complex_subunit_3,chrX:154299695-154351349:+	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0386	TRUE	0	0	0	1	0	TRUE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--MAEA	1	2	UVSSA	7499	chr4:1349033:+	MAEA	26629	chr4:1305767:+	ONLY_REF_SPLICE	YES	22	20	0.12	0.13	0.0193	0.0386	GTEx_FI:{Blood=[count:5=pct:2.9],Skin=[count:4=pct:1.3],Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:1=pct:0.8],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[7119],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.13	0.0579	TRUE	2	0	0	5	0	FALSE	ACH-000206
C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDLBP--PASK	1	1	HDLBP	31228	chr2:242173235:-	PASK	60293	chr2:242051854:-	ONLY_REF_SPLICE	YES	189	464	0.01	0	0.0193	0.0193	NEIGHBORS[77000],HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein,PASK->PAS_domain_containing_serine/threonine_kinase,chr2:242045514-242089679:-	C8166_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0386	FALSE	0	0	0	1	0	FALSE	ACH-000206
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NASP--IGF2BP2	177	106	NASP	1360	chr1:46049877:+	IGF2BP2	29043	chr3:185416135:-	ONLY_REF_SPLICE	YES	296	2	0.49	0.99	1.8717	1.1209	NASP->chr1:46049518-46084566:+,nuclear_autoantigenic_sperm_protein,IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.99	2.9926	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	QKI--RTN4R	91	31	QKI	2336	chr6:163836367:+	RTN4R	37682	chr22:20230633:-	ONLY_REF_SPLICE	YES	15	15	0.89	0.89	0.9623	0.3278	QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,RTN4R->chr22:20228938-20270769:-,reticulon_4_receptor	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.89	1.2901	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	70	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7402	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7402	TRUE	0	0	0	518	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTCF--RP11-67H24.2	63	14	CTCF	2435	chr16:67605167:+	RP11-67H24.2	17584	chr16:32820854:+	INCL_NON_REF_SPLICE	YES	51	0	0.6	1	0.6662	0.148	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,RP11-67H24.2->chr16:32820877-32835966:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.8142	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0020--ATP8A2	54	18	KIAA0020	3511	chr9:2837180:-	ATP8A2	52303	chr13:26273311:+	ONLY_REF_SPLICE	YES	53	0	0.58	1	0.571	0.1903	KIAA0020->chr9:2720469-2844241:-,ATP8A2->ATPase_phospholipid_transporting_8A2,chr13:25946209-26599989:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	1	0.7613	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	50	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5287	0.0211	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5498	FALSE	462	80	0	856	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAPKBP1--PTPRD	43	11	MAPKBP1	1956	chr15:42067587:+	PTPRD	26413	chr9:10033790:-	ONLY_REF_SPLICE	YES	7	0	0.89	1	0.4547	0.1163	MAPKBP1->chr15:42066632-42120053:+,mitogen-activated_protein_kinase_binding_protein_1,PTPRD->Oncogene{Bushman},chr9:8314246-10612723:-,protein_tyrosine_phosphatase,_receptor_type_D	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.571	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC23A2--AC091132.1	39	1	SLC23A2	2214	chr20:4982052:-	AC091132.1	28870	chr17:43532164:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4124	0.0106	SLC23A2->chr20:4833002-4990939:-,solute_carrier_family_23_member_2,AC091132.1->chr17:43530210-43541431:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.423	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	23	8	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2432	0.0846	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3278	TRUE	508	994	45	981	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTCF--RP11-67H24.2	20	7	CTCF	2435	chr16:67605167:+	RP11-67H24.2	18717	chr16:32821987:+	ONLY_REF_SPLICE	YES	51	5	0.35	0.84	0.2115	0.074	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,RP11-67H24.2->chr16:32820877-32835966:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.84	0.2855	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTCF--RP11-67H24.2	13	4	CTCF	2435	chr16:67605167:+	RP11-67H24.2	19903	chr16:32835739:+	ONLY_REF_SPLICE	YES	51	4	0.25	0.81	0.1375	0.0423	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,RP11-67H24.2->chr16:32820877-32835966:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.81	0.1798	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1375	0.0211	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1586	FALSE	499	1288	110	792	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.83	1	0.1163	0.0952	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.2115	FALSE	499	1288	110	792	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPN14--RNLS	12	2	PTPN14	2267	chr1:214724526:-	RNLS	47932	chr10:90122482:-	ONLY_REF_SPLICE	YES	1	10	0.93	0.58	0.1269	0.0211	PTPN14->Oncogene{Bushman},chr1:214522039-214725792:-,protein_tyrosine_phosphatase,_non-receptor_type_14,RNLS->chr10:90033621-90344287:-,renalase,_FAD-dependent_amine_oxidase	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	0.93	0.148	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1269	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1269	TRUE	46	1352	75	139	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-603B24.1--HERC2P3	10	6	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1057	0.0634	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1691	TRUE	27	10	1	20	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	28	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	2	6	0.94	0.84	0.0423	0.2961	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	0.94	0.3384	FALSE	189	492	56	216	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	11	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1163	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1163	FALSE	230	193	14	283	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	10	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.1057	0.0211	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1268	FALSE	189	492	56	216	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	29	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	5	0.97	0.86	0.0317	0.3067	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	0.97	0.3384	FALSE	189	492	56	216	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NASP--IGF2BP2	3	28	NASP	1360	chr1:46049877:+	IGF2BP2	32871	chr3:185407415:-	ONLY_REF_SPLICE	YES	296	26	0.09	0.54	0.0317	0.2961	NASP->chr1:46049518-46084566:+,nuclear_autoantigenic_sperm_protein,IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.54	0.3278	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	9	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	105	0	0.1	1	0.0952	0.0317	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.1269	TRUE	519	3926	326	965	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	8	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.074	0.0846	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.1586	FALSE	189	492	56	216	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	12	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.0634	0.1269	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.1903	FALSE	499	1288	110	792	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0952	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0952	FALSE	462	80	0	856	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	9	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0952	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0952	FALSE	16	356	14	466	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	8	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0846	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0846	FALSE	231	205	14	283	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0.0211	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0951	FALSE	499	1288	110	792	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTCF--RP11-67H24.2	5	7	CTCF	2435	chr16:67605167:+	RP11-67H24.2	18544	chr16:32821814:+	ONLY_REF_SPLICE	YES	51	0	0.19	1	0.0529	0.074	CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,RP11-67H24.2->chr16:32820877-32835966:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.1269	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	57	24	0.16	0.31	0.0529	0.0634	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.31	0.1163	TRUE	267	562	48	632	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--CNN2	6	1	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	98	787	0.07	0.01	0.0634	0.0106	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.07	0.074	FALSE	35	34	3	30	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	5	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0529	0.0106	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0635	FALSE	515	4851	409	746	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0529	FALSE	189	492	56	216	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0529	FALSE	230	198	14	283	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	0	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0529	FALSE	231	217	16	283	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0529	FALSE	231	205	14	283	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0.0846	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1163	FALSE	499	1288	110	792	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	56	24	0.11	0.23	0.0423	0.0317	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.23	0.074	TRUE	267	562	48	632	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-CO1	4	3	MT-CO2	1249	chrM:7834:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	5	9844	0.58	0	0.0423	0.0317	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.58	0.074	FALSE	36	10	0	27	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	3	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0423	0.0317	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.074	FALSE	189	492	56	216	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0.0211	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0634	FALSE	462	80	0	856	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5314	22	0	0.19	0.0423	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.19	0.0529	FALSE	231	217	16	283	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV25--TRAJ40	4	1	TRAV25	1675	chr14:22580974:+	TRAJ40	4682	chr14:22968668:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0.0106	HGNC_GENEFAM,TRAV25->T_cell_receptor_alpha_variable_25,chr14:22580300-22580984:+,TRAJ40->T_cell_receptor_alpha_joining_40,chr14:22968672-22968732:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0529	TRUE	0	1	0	1	1	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0423	FALSE	231	217	16	283	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0423	FALSE	231	217	16	283	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1770	chrM:11529:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0423	FALSE	231	217	16	283	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0423	FALSE	230	198	14	283	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0423	FALSE	231	217	16	283	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1244	chrM:11003:+	MT-ATP8	5476	chrM:8463:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0423	FALSE	231	204	14	283	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-CO1	3	3	MT-CO2	1282	chrM:7867:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	4	8136	0.6	0	0.0317	0.0317	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.6	0.0634	FALSE	36	10	0	27	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-CO1	3	2	MT-CO2	1489	chrM:8074:+	MT-CO1	5621	chrM:6840:+	INCL_NON_REF_SPLICE	YES	1	3405	0.83	0	0.0317	0.0211	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.83	0.0528	FALSE	36	10	0	27	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD3E--MT-CO2	3	0	CD3E	7943	chr11:118186308:+	MT-CO2	11922	chrM:7982:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	CD3E->CD3e_molecule,chr11:118175260-118186890:+,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	FALSE	0	0	0	1	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DEF6--PRDM2	3	0	DEF6	7461	chr6:35286168:+	PRDM2	27715	chr1:14105096:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	DEF6->DEF6,_guanine_nucleotide_exchange_factor,chr6:35265595-35289548:+,PRDM2->Oncogene{Bushman},PR_domain_2,chr1:14026693-14151574:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0020--ATP8A2	3	0	KIAA0020	1197	chr9:2844045:-	ATP8A2	52303	chr13:26273311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	KIAA0020->chr9:2720469-2844241:-,ATP8A2->ATPase_phospholipid_transporting_8A2,chr13:25946209-26599989:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO2--MT-CO1	3	0	MT-CO2	1320	chrM:7905:+	MT-CO1	5908	chrM:7127:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	FALSE	36	10	0	27	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND2--MT-RNR2	3	0	MT-ND2	1459	chrM:4928:+	MT-RNR2	5624	chrM:2252:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	LOCAL_REARRANGEMENT:+:[1241],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	FALSE	19	92	8	6	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	FALSE	231	217	16	283	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	FALSE	231	204	14	283	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	FALSE	231	217	16	283	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOA5--MT-ND4L	3	0	NCOA5	8877	chr20:44691437:-	MT-ND4L	13833	chrM:10612:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	NCOA5->chr20:44689624-44718591:-,nuclear_receptor_coactivator_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	FALSE	0	0	0	1	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDHX--SEPT6	3	0	PDHX	13706	chr11:35016599:+	SEPT6	30115	chrX:118763435:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,SEPT6->Oncogene{Bushman},chrX:118749687-118827333:-,septin_6	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIP4K2A--RBM27	3	0	PIP4K2A	19634	chr10:22825721:-	RBM27	28965	chr5:145609377:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha,RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-440L14.1--CTBP1	3	0	RP11-440L14.1	1078	chr4:775560:-	CTBP1	11273	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	RP11-440L14.1->chr4:756175-775637:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	2	0	7	2	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD2--STIM1	3	0	SMAD2	1784	chr18:45456732:-	STIM1	49660	chr11:4091256:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	SMAD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_2,chr18:45357922-45457515:-,STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZCCHC10--HSPA4	3	0	ZCCHC10	1108	chr5:132362189:-	HSPA4	17269	chr5:132408922:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	LOCAL_INVERSION:-:+:[25358],ZCCHC10->chr5:132332677-132362296:-,zinc_finger_CCHC-type_containing_10,HSPA4->chr5:132387654-132442141:+,heat_shock_protein_family_A_(Hsp70)_member_4	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLDC1--COTL1	2	2	TLDC1	1088	chr16:84587552:-	COTL1	24450	chr16:84623868:-	ONLY_REF_SPLICE	YES	1	1243	0.8	0	0.0211	0.0211	LOCAL_REARRANGEMENT:-:[11561],TLDC1->TBC/LysM-associated_domain_containing_1,chr16:84511681-84587639:-,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.8	0.0422	FALSE	0	1	0	3	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP3D1--SIN3B	2	0	AP3D1	25116	chr19:2108686:-	SIN3B	49252	chr19:16986866:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,SIN3B->SIN3_transcription_regulator_family_member_B,chr19:16940211-16991164:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATL2--MGAT4A	2	0	ATL2	6688	chr2:38570410:-	MGAT4A	24843	chr2:99343030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,MGAT4A->chr2:99235569-99347589:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_A	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP6V0E2--ZNF862	2	0	ATP6V0E2	5235	chr7:149575879:+	ZNF862	11410	chr7:149541714:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_REARRANGEMENT:+:[5489],ATP6V0E2->ATPase_H+_transporting_V0_subunit_e2,chr7:149570057-149577784:+,ZNF862->chr7:149535456-149564568:+,zinc_finger_protein_862	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU2--CDK8	2	0	DLEU2	5811	chr13:50642233:-	CDK8	16360	chr13:26911704:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),CDK8->ArcherDX_panel,FoundationOne_panel,chr13:26828276-26979375:+,cyclin-dependent_kinase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FANCI--TUBGCP6	2	0	FANCI	30845	chr15:89848929:+	TUBGCP6	54306	chr22:50658444:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIF1A--HERPUD2	2	0	HIF1A	11809	chr14:62203827:+	HERPUD2	31518	chr7:35674039:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,HERPUD2->HERPUD_family_member_2,chr7:35672269-35735181:-	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IRAK1--SUPT5H	2	0	IRAK1	4949	chrX:153281483:-	SUPT5H	28399	chr19:39961997:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	IRAK1->chrX:153275951-153285431:-,interleukin_1_receptor_associated_kinase_1,SUPT5H->SPT5_homolog,_DSIF_elongation_factor_subunit,chr19:39926796-39967310:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1551--LINC00339	2	0	KIAA1551	4726	chr12:32123290:+	LINC00339	20114	chr1:22356773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	KIAA1551->KIAA1551,chr12:32112304-32146039:+,LINC00339->chr1:22351681-22357716:+,long_intergenic_non-protein_coding_RNA_339	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MFN1--ZNF638	2	0	MFN1	2272	chr3:179066751:+	ZNF638	66533	chr2:71655677:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	MFN1->chr3:179065480-179112719:+,mitofusin_1,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MGAT4A--CTD-2410N18.5	2	0	MGAT4A	3575	chr2:99342702:-	CTD-2410N18.5	28536	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	MGAT4A->chr2:99235569-99347589:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_A,CTD-2410N18.5->chr5:133502861-133561762:-	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTERF--ACN9	2	0	MTERF	1666	chr7:91509369:-	ACN9	16199	chr7:96765700:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	MTERF->chr7:91321323-91510034:-,ACN9->chr7:96745902-96811075:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFA4--PHF14	2	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	19	32	3	60	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUCB1--ZC3H14	2	0	NUCB1	1882	chr19:49404188:+	ZC3H14	21792	chr14:89041037:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	NUCB1->chr19:49403307-49426629:+,nucleobindin_1,ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPARD--HINT1	2	0	PPARD	8663	chr6:35392556:+	HINT1	20427	chr5:130495304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PPARD->Oncogene{Bushman},chr6:35310335-35395968:+,peroxisome_proliferator_activated_receptor_delta,HINT1->chr5:130494720-130507428:-,histidine_triad_nucleotide_binding_protein_1	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RHOH--CORIN	2	0	RHOH	4526	chr4:40198920:+	CORIN	22868	chr4:47809064:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RHOH->Oncogene{Bushman},chr4:40192673-40248587:+,ras_homolog_family_member_H,CORIN->chr4:47596015-47840123:-,corin,_serine_peptidase	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF4--ADD1	2	0	RNF4	8817	chr4:2492229:+	ADD1	29951	chr4:2877623:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RNF4->chr4:2463947-2627047:+,ring_finger_protein_4,ADD1->adducin_1,chr4:2845584-2931803:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-357C3.3--ARHGEF9	2	0	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	21715	chrX:62944591:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	2	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPAP2--GPATCH2L	2	0	RPAP2	13304	chr1:92846430:+	GPATCH2L	63297	chr14:76696151:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RPAP2->RNA_polymerase_II_associated_protein_2,chr1:92764522-92867613:+,GPATCH2L->G-patch_domain_containing_2_like,chr14:76618259-76720685:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SAMHD1--KAT8	2	0	SAMHD1	15871	chr20:35526225:-	KAT8	24080	chr16:31128784:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-,KAT8->chr16:31127075-31142714:+,lysine_acetyltransferase_8	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	62	24	1	171	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	U2SURP--ATR	2	0	U2SURP	20622	chr3:142747488:+	ATR	44013	chr3:142281951:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+,ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFAND3--ATF7IP2	2	0	ZFAND3	1518	chr6:37787792:+	ATF7IP2	35514	chr16:10567336:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3,ATF7IP2->activating_transcription_factor_7_interacting_protein_2,chr16:10420291-10577495:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF736--ERCC6	2	0	ZNF736	8361	chr7:63797360:+	ERCC6	25205	chr10:50732823:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,ERCC6->Oncogene{Bushman},chr10:50663414-50747584:-,excision_repair_cross-complementation_group_6	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--CHMP1A	2	0	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0211	TRUE	1	20	1	28	3	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0.0211	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0317	FALSE	416	2512	207	587	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXW7--GABRB2	1	1	FBXW7	15935	chr4:153251884:-	GABRB2	28455	chr5:160975029:-	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0106	0.0106	FBXW7->ArcherDX_panel,F-box_and_WD_repeat_domain_containing_7,FoundationOne_panel,Oncogene{Bushman},chr4:153242410-153457253:-,GABRB2->chr5:160715436-160976050:-,gamma-aminobutyric_acid_type_A_receptor_beta2_subunit	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LATS1--PCMT1	1	1	LATS1	1408	chr6:150038985:-	PCMT1	23718	chr6:150092298:+	ONLY_REF_SPLICE	YES	23	338	0.08	0.01	0.0106	0.0106	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_INVERSION:-:+:[31187],LATS1->Oncogene{Bushman},chr6:149979289-150039392:-,large_tumor_suppressor_kinase_1,PCMT1->chr6:150070579-150132556:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.08	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED16--CNN2	1	1	MED16	9051	chr19:879937:-	CNN2	24620	chr19:1036129:+	ONLY_REF_SPLICE	YES	79	787	0.02	0	0.0106	0.0106	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood=[count:2=pct:1.1],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Whole_Blood=3,Liver=1,Esophagus_-_Mucosa=1,Spleen=1},MED16->chr19:867962-893218:-,mediator_complex_subunit_16,CNN2->calponin_2,chr19:1026298-1039068:+	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0212	FALSE	4	0	1	5	0	FALSE	ACH-000122
SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	1	1	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0106	0.0106	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	SUPT11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0212	TRUE	37	101	7	40	0	FALSE	ACH-000122
SCC9_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	146	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1588	0.1905	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	1.3493	TRUE	508	994	45	981	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	133	38	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	24	19	0.88	0.9	1.0556	0.3016	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SCC9_UPPER_AERODIGESTIVE_TRACT	0.88	0.9	1.3572	TRUE	181	1564	124	196	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	124	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9842	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.9842	FALSE	369	2501	205	193	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	NBR1--MYH11	99	24	NBR1	21155	chr17:41355803:+	MYH11	63398	chr16:15815491:-	ONLY_REF_SPLICE	YES	72	0	0.63	1	0.7858	0.1905	{Klijn_CCL:Head-Neck=1},NBR1->Oncogene{Bushman},chr17:41322498-41363708:+,neighbor_of_BRCA1_gene_1,MYH11->Oncogene{Bushman},chr16:15797029-15950890:-,myosin,_heavy_chain_11,_smooth_muscle	SCC9_UPPER_AERODIGESTIVE_TRACT	0.63	1	0.9763	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	87	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6905	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.6905	TRUE	519	3926	326	965	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	83	12	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6588	0.0952	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.754	FALSE	462	80	0	856	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	KIF24--GNE	78	22	KIF24	3933	chr9:34306250:-	GNE	23689	chr9:36249394:-	ONLY_REF_SPLICE	YES	3	79	0.97	0.56	0.6191	0.1746	{Klijn_CCL:Head-Neck=1},KIF24->chr9:34252379-34329198:-,kinesin_family_member_24,GNE->chr9:36214438-36277053:-,glucosamine_(UDP-N-acetyl)-2-epimerase/N-acetylmannosamine_kinase	SCC9_UPPER_AERODIGESTIVE_TRACT	0.56	0.97	0.7937	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	265	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	12	1	0.96	1	0.0476	2.1033	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.96	1	2.1509	FALSE	344	826	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	267	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	18	1	0.94	1	0.0317	2.1192	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.94	1	2.1509	FALSE	344	826	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	58	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4604	0.0556	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.516	FALSE	499	1288	110	792	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	215	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	9	0	0.96	1	0.0397	1.7065	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.96	1	1.7462	FALSE	344	826	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	11	183	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	9	0	0.96	1	0.0873	1.4525	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.96	1	1.5398	FALSE	344	821	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	197	MT-ND4	1475	chrM:11234:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	503	1	0.29	1	0.0397	1.5636	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.29	1	1.6033	FALSE	344	827	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	196	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	12	1	0.94	0.99	0.0238	1.5557	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.94	0.99	1.5795	FALSE	344	826	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	22	93	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1746	0.7382	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.9128	FALSE	369	2501	205	193	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	152	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	15	2	0.91	0.99	0.0238	1.2064	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.91	0.99	1.2302	FALSE	344	826	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	138	MT-ND4	1756	chrM:11515:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	6622	1	0.02	0.99	0.0238	1.0953	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.02	0.99	1.1191	FALSE	344	827	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	30	27	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.2381	0.2143	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC9_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.4524	FALSE	499	1288	110	792	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	20	66	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1587	0.5238	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.6825	FALSE	369	2501	205	193	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	28	25	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2222	0.1984	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.4206	FALSE	369	2501	205	193	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	16	71	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	16526	0	0.01	1	0.127	0.5635	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.6905	FALSE	328	800	43	304	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	ZNF654--HMGB2	31	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2461	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.2461	TRUE	0	0	0	518	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	18	46	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	532	0	0.11	1	0.1429	0.3651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.508	FALSE	344	827	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	98	MT-ND4	1117	chrM:10876:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	13	1	0.89	0.99	0.0317	0.7778	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.89	0.99	0.8095	FALSE	344	826	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	98	MT-ND4	1209	chrM:10968:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	YES	41	0	0.71	1	0.0317	0.7778	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.71	1	0.8095	FALSE	344	826	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	16	46	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	42	0	0.6	1	0.127	0.3651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.6	1	0.4921	FALSE	344	826	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	TNS4--IFT122	25	10	TNS4	8259	chr17:38638381:-	IFT122	30054	chr3:129188185:+	ONLY_REF_SPLICE	YES	608	13	0.05	0.73	0.1984	0.0794	TNS4->chr17:38632080-38657849:-,tensin_4,IFT122->chr3:129158968-129239198:+,intraflagellar_transport_122	SCC9_UPPER_AERODIGESTIVE_TRACT	0.05	0.73	0.2778	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	19	29	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.1508	0.2302	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC9_UPPER_AERODIGESTIVE_TRACT	0.98	1	0.381	FALSE	499	1288	110	792	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	24	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1905	0.0635	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.254	FALSE	499	1288	110	792	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	PLXDC1--TAF13	26	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2064	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.2064	TRUE	7	10	0	216	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	13	48	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1032	0.381	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.4842	FALSE	369	2501	205	193	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	23	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1826	0.0397	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.2223	FALSE	416	2512	207	587	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	73	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	9	2	0.9	0.97	0.0397	0.5794	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.9	0.97	0.6191	FALSE	344	821	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	72	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	3	2	0.96	0.97	0.0397	0.5715	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.96	0.97	0.6112	FALSE	344	821	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	76	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	4	2	0.95	0.98	0.0238	0.6032	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.95	0.98	0.627	FALSE	344	821	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	22	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1746	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.1746	FALSE	369	2501	205	193	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	22	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1746	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.1746	FALSE	369	2501	205	193	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	67	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0238	0.5318	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.5556	FALSE	499	1288	110	792	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	8	45	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.0635	0.3572	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC9_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.4207	FALSE	499	1288	110	792	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	59	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.0238	0.4683	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.4921	FALSE	344	821	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	46	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	27	0	0.66	1	0.0476	0.3651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.66	1	0.4127	FALSE	344	826	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	46	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	41	0	0.56	1	0.0476	0.3651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.56	1	0.4127	FALSE	344	826	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	SLC7A5--MT-ND4L	14	8	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	3044	0	0.01	1	0.1111	0.0635	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.1746	FALSE	0	0	0	23	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	35	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	5	2	0.89	0.95	0.0476	0.2778	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.89	0.95	0.3254	FALSE	344	821	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	46	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	72	0	0.4	1	0.0238	0.3651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.3889	FALSE	344	827	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	41	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0238	0.3254	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.3492	FALSE	369	2501	205	193	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	35	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	6	0	0.87	1	0.0317	0.2778	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC9_UPPER_AERODIGESTIVE_TRACT	0.87	1	0.3095	FALSE	499	1288	110	792	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	NSD1--NCOA7	10	10	NSD1	7689	chr5:176631293:+	NCOA7	63001	chr6:126236479:+	ONLY_REF_SPLICE	YES	10	14	0.67	0.59	0.0794	0.0794	NSD1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176560026-176727216:+,nuclear_receptor_binding_SET_domain_protein_1,NCOA7->chr6:126102307-126252266:+,nuclear_receptor_coactivator_7	SCC9_UPPER_AERODIGESTIVE_TRACT	0.59	0.67	0.1588	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	5	29	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0.2302	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.2699	FALSE	369	2501	205	193	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	9	10	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0714	0.0794	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.1508	FALSE	462	80	0	856	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	28	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0317	0.2222	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC9_UPPER_AERODIGESTIVE_TRACT	0.91	1	0.2539	FALSE	499	1288	110	792	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	11	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0873	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0873	FALSE	499	1288	110	792	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	21	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	35	0	0.43	1	0.0397	0.1667	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.43	1	0.2064	FALSE	344	826	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	AP000275.65--RUNX1	9	4	AP000275.65	2345	chr21:33982148:-	RUNX1	18482	chr21:37236765:-	ONLY_REF_SPLICE	YES	26	0	0.33	1	0.0714	0.0317	AP000275.65->chr21:33951132-33984591:-,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	SCC9_UPPER_AERODIGESTIVE_TRACT	0.33	1	0.1031	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	KIF24--GNE	4	24	KIF24	5031	chr9:34297015:-	GNE	23689	chr9:36249394:-	ONLY_REF_SPLICE	YES	5	79	0.85	0.26	0.0317	0.1905	{Klijn_CCL:Head-Neck=1},KIF24->chr9:34252379-34329198:-,kinesin_family_member_24,GNE->chr9:36214438-36277053:-,glucosamine_(UDP-N-acetyl)-2-epimerase/N-acetylmannosamine_kinase	SCC9_UPPER_AERODIGESTIVE_TRACT	0.26	0.85	0.2222	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	10	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0794	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0794	FALSE	351	233	23	137	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	28	MT-ND6	1342	chrM:14332:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0238	0.2222	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC9_UPPER_AERODIGESTIVE_TRACT	0.91	1	0.246	FALSE	499	1288	110	792	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	9	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	6	13	0.67	0.48	0.0714	0.0238	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SCC9_UPPER_AERODIGESTIVE_TRACT	0.48	0.67	0.0952	TRUE	267	562	48	632	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	KRT5--MT-CO3	9	0	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0714	0	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0714	FALSE	0	0	0	18	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.92	0.0635	0.0317	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	0.92	1	0.0952	FALSE	344	821	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	PRKCH--SPTB	8	1	PRKCH	22811	chr14:61924397:+	SPTB	43322	chr14:65289863:-	ONLY_REF_SPLICE	YES	31	0	0.23	1	0.0635	0.0079	PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta,SPTB->chr14:65213002-65346601:-,spectrin_beta,_erythrocytic	SCC9_UPPER_AERODIGESTIVE_TRACT	0.23	1	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	8	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0635	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0635	FALSE	369	2501	205	193	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	14	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0.1111	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.1428	FALSE	462	80	0	856	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0556	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0556	FALSE	344	821	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	SLC7A5--KRT6A	6	1	SLC7A5	7177	chr16:87872365:-	KRT6A	17582	chr12:52887040:-	INCL_NON_REF_SPLICE	YES	2396	0	0	1	0.0476	0.0079	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.05%,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,KRT6A->chr12:52880958-52887041:-,keratin_6A	SCC9_UPPER_AERODIGESTIVE_TRACT	0	1	0.0555	FALSE	0	0	0	2	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	6	0	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0476	0	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0476	TRUE	267	562	48	632	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0476	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0476	FALSE	344	821	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0476	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0476	FALSE	499	1288	110	792	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0476	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0476	FALSE	462	80	0	856	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0476	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0476	FALSE	369	2501	205	193	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	10	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0238	0.0794	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.1032	FALSE	462	80	0	856	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	TNS4--IFT122	3	10	TNS4	8291	chr17:38638349:-	IFT122	30054	chr3:129188185:+	INCL_NON_REF_SPLICE	YES	684	13	0.02	0.5	0.0238	0.0794	TNS4->chr17:38632080-38657849:-,tensin_4,IFT122->chr3:129158968-129239198:+,intraflagellar_transport_122	SCC9_UPPER_AERODIGESTIVE_TRACT	0.02	0.5	0.1032	TRUE	0	0	0	1	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	CLTA--GNE	5	1	CLTA	4686	chr9:36204176:+	GNE	27848	chr9:36220017:-	ONLY_REF_SPLICE	YES	2236	163	0	0.04	0.0397	0.0079	NEIGHBORS_OVERLAP:+:-:[62615],CLTA->chr9:36190853-36304778:+,clathrin_light_chain_A,GNE->chr9:36214438-36277053:-,glucosamine_(UDP-N-acetyl)-2-epimerase/N-acetylmannosamine_kinase	SCC9_UPPER_AERODIGESTIVE_TRACT	0	0.04	0.0476	FALSE	0	0	0	1	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	AL589743.1--RP11-536C10.17	5	0	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0397	TRUE	0	33	0	45	33	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0397	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0397	TRUE	465	1949	224	605	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	2	9	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	25	19	0.31	0.37	0.0159	0.0714	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SCC9_UPPER_AERODIGESTIVE_TRACT	0.31	0.37	0.0873	TRUE	105	90	7	93	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	ATF7--TMTC1	4	0	ATF7	13231	chr12:53917060:-	TMTC1	48530	chr12:29673653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,TMTC1->chr12:29653773-29937692:-,transmembrane_and_tetratricopeptide_repeat_containing_1	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	2	8	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	24	17	0.29	0.37	0.0159	0.0635	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SCC9_UPPER_AERODIGESTIVE_TRACT	0.29	0.37	0.0794	TRUE	20	16	0	28	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	KRT5--MT-CO3	4	0	KRT5	1489	chr12:52913983:-	MT-CO3	10505	chrM:9598:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0317	FALSE	0	0	0	18	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0317	FALSE	344	821	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1025	chrM:14649:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0317	FALSE	499	1288	110	792	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0317	FALSE	499	1288	110	792	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0317	FALSE	369	2501	205	193	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	CPSF6--CHMP1A	3	2	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	81	149	0.06	0.03	0.0238	0.0159	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SCC9_UPPER_AERODIGESTIVE_TRACT	0.03	0.06	0.0397	TRUE	95	74	6	34	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	3	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	1	0.62	0.83	0.0238	0.0159	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCC9_UPPER_AERODIGESTIVE_TRACT	0.62	0.83	0.0397	FALSE	292	1546	117	613	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	1	MT-ND6	1027	chrM:14647:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0238	0.0079	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0317	FALSE	499	1288	110	792	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	SERPINE1--MTATP6P1	3	1	SERPINE1	9404	chr7:100781321:+	MTATP6P1	13934	chr1:569379:+	INCL_NON_REF_SPLICE	YES	4050	1205	0	0	0.0238	0.0079	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SCC9_UPPER_AERODIGESTIVE_TRACT	0	0	0.0317	FALSE	0	0	0	1	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	APP--ATP5J	2	4	APP	1565	chr21:27542882:-	ATP5J	37559	chr21:27090071:-	ONLY_REF_SPLICE	YES	1780	3	0	0.67	0.0159	0.0317	GTEx_FI:{Lung=[count:1=pct:0.6],Skin=[count:1=pct:0.3]},APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,ATP5J->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_F6,chr21:27088815-27107984:-	SCC9_UPPER_AERODIGESTIVE_TRACT	0	0.67	0.0476	FALSE	0	0	0	1	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	3	0	MT-ND3	1060	chrM:10118:+	MT-ATP8	4489	chrM:8508:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0238	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0238	FALSE	351	233	23	137	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0238	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0238	FALSE	344	821	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0238	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0238	FALSE	344	821	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0238	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0238	FALSE	344	821	44	306	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0238	TRUE	458	1351	185	561	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	3	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0238	FALSE	515	4851	409	746	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	YWHAE--CRK	3	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0238	TRUE	6	50	7	115	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	1	0.29	0.8	0.0159	0.0159	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCC9_UPPER_AERODIGESTIVE_TRACT	0.29	0.8	0.0318	FALSE	125	705	46	456	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	KIF24--GNE	2	1	KIF24	5031	chr9:34297015:-	GNE	24895	chr9:36246479:-	ONLY_REF_SPLICE	YES	5	112	0.38	0.03	0.0159	0.0079	{Klijn_CCL:Head-Neck=1},KIF24->chr9:34252379-34329198:-,kinesin_family_member_24,GNE->chr9:36214438-36277053:-,glucosamine_(UDP-N-acetyl)-2-epimerase/N-acetylmannosamine_kinase	SCC9_UPPER_AERODIGESTIVE_TRACT	0.03	0.38	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	3	1	0.5	0.75	0.0159	0.0079	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCC9_UPPER_AERODIGESTIVE_TRACT	0.5	0.75	0.0238	FALSE	25	145	6	90	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	1	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0079	0.0397	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0476	FALSE	9	21	5	22	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0.0079	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0238	TRUE	62	24	1	171	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	ATF7--TMTC1	2	0	ATF7	15239	chr12:53910799:-	TMTC1	48530	chr12:29673653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,TMTC1->chr12:29653773-29937692:-,transmembrane_and_tetratricopeptide_repeat_containing_1	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	CLTA--SIGMAR1	2	0	CLTA	4686	chr9:36204176:+	SIGMAR1	16846	chr9:34637417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	CLTA->chr9:36190853-36304778:+,clathrin_light_chain_A,SIGMAR1->chr9:34634719-34637806:-,sigma_non-opioid_intracellular_receptor_1	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	SLC25A32--ATP6V1C1	2	0	SLC25A32	1406	chr8:104427012:-	ATP6V1C1	19009	chr8:104066112:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	STX18-AS1--EIF4A1	2	0	STX18-AS1	2665	chr4:4546634:+	EIF4A1	19699	chr17:7478437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	TMCC1--MSL2	2	0	TMCC1	11579	chr3:129546646:-	MSL2	30270	chr3:135871580:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1,MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila)	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	TMCC1--MSL2	2	0	TMCC1	12719	chr3:129513167:-	MSL2	30270	chr3:135871580:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0159	0	TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1,MSL2->chr3:135867764-135916083:-,male-specific_lethal_2_homolog_(Drosophila)	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0159	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	AP000275.65--RUNX1	1	2	AP000275.65	1177	chr21:33984415:-	RUNX1	18482	chr21:37236765:-	ONLY_REF_SPLICE	YES	44	0	0.06	1	0.0079	0.0159	AP000275.65->chr21:33951132-33984591:-,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	SCC9_UPPER_AERODIGESTIVE_TRACT	0.06	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	EPHA3--TF	1	2	EPHA3	4039	chr3:89259670:+	TF	28311	chr3:133467256:+	ONLY_REF_SPLICE	NO	5	0	0.38	1	0.0079	0.0159	EPHA3->ArcherDX_panel,EPH_receptor_A3,FoundationOne_panel,Oncogene{Bushman},chr3:89156674-89531284:+,TF->chr3:133464800-133497850:+,transferrin	SCC9_UPPER_AERODIGESTIVE_TRACT	0.38	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	1	0.23	0.75	0.0079	0.0159	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCC9_UPPER_AERODIGESTIVE_TRACT	0.23	0.75	0.0238	FALSE	164	806	69	479	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	PRKCH--SPTB	1	2	PRKCH	24103	chr14:61930078:+	SPTB	43322	chr14:65289863:-	ONLY_REF_SPLICE	NO	38	0	0.07	1	0.0079	0.0159	PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta,SPTB->chr14:65213002-65346601:-,spectrin_beta,_erythrocytic	SCC9_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	2	13	0.6	0.19	0.0079	0.0159	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SCC9_UPPER_AERODIGESTIVE_TRACT	0.19	0.6	0.0238	FALSE	16	356	14	466	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	AP000275.65--RUNX1	1	1	AP000275.65	2345	chr21:33982148:-	RUNX1	20721	chr21:36953227:-	ONLY_REF_SPLICE	YES	26	0	0.07	1	0.0079	0.0079	AP000275.65->chr21:33951132-33984591:-,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	SCC9_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	CLTA--GNE	1	1	CLTA	4686	chr9:36204176:+	GNE	29031	chr9:36218296:-	ONLY_REF_SPLICE	YES	2236	139	0	0.01	0.0079	0.0079	NEIGHBORS_OVERLAP:+:-:[62615],CLTA->chr9:36190853-36304778:+,clathrin_light_chain_A,GNE->chr9:36214438-36277053:-,glucosamine_(UDP-N-acetyl)-2-epimerase/N-acetylmannosamine_kinase	SCC9_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0158	FALSE	0	0	0	1	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	CSNK1D--PKP3	1	1	CSNK1D	6544	chr17:80213305:-	PKP3	29685	chr11:398992:+	ONLY_REF_SPLICE	YES	297	308	0.01	0.01	0.0079	0.0079	CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-,PKP3->chr11:392614-404908:+,plakophilin_3	SCC9_UPPER_AERODIGESTIVE_TRACT	0.01	0.01	0.0158	FALSE	0	0	0	1	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0079	0.0079	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0158	FALSE	93	270	15	244	0	FALSE	ACH-000181
SCC9_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0079	0.0079	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SCC9_UPPER_AERODIGESTIVE_TRACT	1	1	0.0158	FALSE	467	2173	244	435	0	FALSE	ACH-000181
COV318_OVARY	MT-TA--MT-TN	159	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.47	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	1.47	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	153	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	1.4146	0.0462	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.99	1	1.4608	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TC	90	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8321	0.0925	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COV318_OVARY	1	1	0.9246	FALSE	462	80	0	856	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	84	31	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	13	0	0.9	1	0.7766	0.2866	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.9	1	1.0632	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	CCDC88C--GLIS3-AS1	80	37	CCDC88C	3216	chr14:91875003:-	GLIS3-AS1	47236	chr9:3900833:+	ONLY_REF_SPLICE	YES	25	94	0.82	0.55	0.7396	0.3421	CCDC88C->chr14:91737667-91884188:-,coiled-coil_domain_containing_88C,GLIS3-AS1->GLIS3_antisense_RNA_1,chr9:3898642-3901248:+	COV318_OVARY	0.55	0.82	1.0817	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	62	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.5732	0.0555	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.99	1	0.6287	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	TIMM23B--LINC00843	51	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4715	0.1849	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COV318_OVARY	1	1	0.6564	TRUE	508	994	45	981	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TN	28	80	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2589	0.7396	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	0.9985	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	TIMM23--RP11-464F9.1	36	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	163	5	0.19	0.88	0.3328	0.0185	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	COV318_OVARY	0.19	0.88	0.3513	TRUE	519	3926	326	965	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TN	19	66	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1757	0.6102	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	0.7859	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	23	44	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	13	0	0.84	1	0.2126	0.4068	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.84	1	0.6194	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TN	31	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2866	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	0.2866	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TN	17	46	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1572	0.4253	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	0.5825	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	ZNF654--HMGB2	28	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2589	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	COV318_OVARY	1	1	0.2589	TRUE	0	0	0	518	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TN	23	19	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2126	0.1757	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	0.3883	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TN	20	30	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1849	0.2774	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	0.4623	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	TMEM184C--ARHGAP10	22	16	TMEM184C	6042	chr4:148550843:+	ARHGAP10	41576	chr4:148944414:+	ONLY_REF_SPLICE	YES	14	1	0.73	0.97	0.2034	0.1479	{Klijn_CCL:Ovary=1},NEIGHBORS[60019],TMEM184C->chr4:148538534-148593195:+,transmembrane_protein_184C,ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+	COV318_OVARY	0.73	0.97	0.3513	FALSE	0	0	0	1	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	14	44	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	14	0	0.81	1	0.1294	0.4068	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.81	1	0.5362	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	AP003900.6--AC011718.2	23	5	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	2	0	0.93	1	0.2126	0.0462	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	COV318_OVARY	0.93	1	0.2588	TRUE	0	3	0	38	3	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TC	21	11	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1942	0.1017	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COV318_OVARY	1	1	0.2959	FALSE	462	80	0	856	0	FALSE	ACH-000256
COV318_OVARY	WNK1--TCEB3	20	13	WNK1	2732	chr12:863490:+	TCEB3	46113	chr1:24075511:+	ONLY_REF_SPLICE	YES	63	58	0.34	0.36	0.1849	0.1202	{Klijn_CCL:Ovary=1},WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,TCEB3->chr1:24069645-24088549:+,transcription_elongation_factor_B_subunit_3	COV318_OVARY	0.34	0.36	0.3051	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	CTD-2008L17.1--RP11-456O19.2	17	11	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	5	0	0.85	1	0.1572	0.1017	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	COV318_OVARY	0.85	1	0.2589	FALSE	33	240	4	98	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	12	26	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.1109	0.2404	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.95	1	0.3513	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TC	18	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1664	0.0092	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COV318_OVARY	1	1	0.1756	FALSE	462	80	0	856	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TN	6	48	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0.4438	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	0.4993	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	7	42	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	14	0	0.78	1	0.0647	0.3883	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.78	1	0.453	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	16	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1479	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	1	1	0.1479	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TN	5	43	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0.3976	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	0.4438	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	RP11-123O10.4--GRIP1	14	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	5	1	0.79	0.1294	0.0462	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COV318_OVARY	0.79	1	0.1756	FALSE	416	2512	207	587	0	FALSE	ACH-000256
COV318_OVARY	RP11-680G10.1--GSE1	13	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	15	1	0.59	0.1202	0.0832	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COV318_OVARY	0.59	1	0.2034	TRUE	458	1351	185	561	0	FALSE	ACH-000256
COV318_OVARY	AP000525.9--LA16c-60G3.6	14	4	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	10	0	0.64	1	0.1294	0.037	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	COV318_OVARY	0.64	1	0.1664	TRUE	0	42	0	133	42	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TN	4	44	MT-TA	1051	chrM:5605:-	MT-TN	4091	chrM:5708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0.4068	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	0.4438	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	4	42	MT-ND6	1196	chrM:14478:-	MT-TE	4557	chrM:14711:-	INCL_NON_REF_SPLICE	YES	14	0	0.77	1	0.037	0.3883	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.77	1	0.4253	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	6	34	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	14	0	0.74	1	0.0555	0.3143	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.74	1	0.3698	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	C15orf57--CBX3	11	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	21	58	0.52	0.28	0.1017	0.1109	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COV318_OVARY	0.28	0.52	0.2126	TRUE	267	562	48	632	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	3	43	MT-ND6	1153	chrM:14521:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	9	0	0.84	1	0.0277	0.3976	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.84	1	0.4253	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	6	31	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	176	0	0.17	1	0.0555	0.2866	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.17	1	0.3421	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TN	13	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1202	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	0.1202	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	RP11-680G10.1--GSE1	12	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	58	1	0.21	0.1109	0.0277	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COV318_OVARY	0.21	1	0.1386	TRUE	465	1949	224	605	0	FALSE	ACH-000256
COV318_OVARY	C15orf57--CBX3	10	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	20	62	0.49	0.23	0.0925	0.0832	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COV318_OVARY	0.23	0.49	0.1757	TRUE	267	562	48	632	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TN	12	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1109	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	0.1109	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	3	31	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	14	0	0.71	1	0.0277	0.2866	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.71	1	0.3143	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	PKN1--EPS15L1	10	3	PKN1	1490	chr19:14544354:+	EPS15L1	21889	chr19:16553030:-	ONLY_REF_SPLICE	YES	7	1	0.65	0.93	0.0925	0.0277	PKN1->chr19:14543865-14582679:+,protein_kinase_N1,EPS15L1->Oncogene{Bushman},chr19:16466050-16582896:-,epidermal_growth_factor_receptor_pathway_substrate_15-like_1	COV318_OVARY	0.65	0.93	0.1202	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	MT-TA--MT-TC	7	13	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0647	0.1202	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COV318_OVARY	1	1	0.1849	FALSE	462	80	0	856	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	10	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0925	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	1	1	0.0925	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	9	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0832	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	1	1	0.0832	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	6	12	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	13	0	0.58	1	0.0555	0.1109	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.58	1	0.1664	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TC	6	10	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0.0925	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COV318_OVARY	1	1	0.148	FALSE	462	80	0	856	0	FALSE	ACH-000256
COV318_OVARY	RP4-565E6.1--HYDIN	7	6	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.0647	0.0555	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	COV318_OVARY	0.93	1	0.1202	TRUE	456	1387	91	133	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	8	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	1	1	0.074	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TN	8	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	0.074	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TN	8	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	0.074	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TN	8	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	0.074	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	4	14	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	5	0	0.78	1	0.037	0.1294	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.78	1	0.1664	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	3	18	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	155	0	0.12	1	0.0277	0.1664	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.12	1	0.1941	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MYL6--SRP9	7	1	MYL6	2462	chr12:56553406:+	SRP9	9443	chr1:225965637:+	ONLY_REF_SPLICE	YES	89	41	0.08	0.16	0.0647	0.0092	MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	COV318_OVARY	0.08	0.16	0.0739	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0647	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	1	1	0.0647	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TC	4	12	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0.1109	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COV318_OVARY	1	1	0.1479	FALSE	462	80	0	856	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TN	7	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0647	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	0.0647	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	BSCL2--ZNF536	6	3	BSCL2	6627	chr11:62469940:-	ZNF536	22439	chr19:30934468:+	ONLY_REF_SPLICE	YES	86	0	0.09	1	0.0555	0.0277	BSCL2->Berardinelli-Seip_congenital_lipodystrophy_2_(seipin),chr11:62457747-62477317:-,ZNF536->chr19:30719197-31204445:+,zinc_finger_protein_536	COV318_OVARY	0.09	1	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	3	15	MT-ND6	1261	chrM:14413:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	13	0	0.58	1	0.0277	0.1387	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.58	1	0.1664	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	PPARD--C6orf89	6	3	PPARD	2208	chr6:35314927:+	C6orf89	16174	chr6:36846784:+	ONLY_REF_SPLICE	YES	18	0	0.33	1	0.0555	0.0277	PPARD->Oncogene{Bushman},chr6:35310335-35395968:+,peroxisome_proliferator_activated_receptor_delta,C6orf89->chr6:36839646-36896740:+,chromosome_6_open_reading_frame_89	COV318_OVARY	0.33	1	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	AP003900.6--AC011718.2	3	13	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.0277	0.1202	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	COV318_OVARY	0.89	1	0.1479	TRUE	0	5	0	45	5	FALSE	ACH-000256
COV318_OVARY	NRIP1--AF127936.7	6	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0555	0.0092	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COV318_OVARY	0.78	1	0.0647	FALSE	292	1546	117	613	0	FALSE	ACH-000256
COV318_OVARY	RP11-444D3.1--SOX5	4	9	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	7	1	0.65	0.037	0.0832	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	COV318_OVARY	0.65	1	0.1202	TRUE	477	1352	189	275	0	FALSE	ACH-000256
COV318_OVARY	UPK3B--MT-CO3	6	1	UPK3B	5486	chr7:76144431:+	MT-CO3	12256	chrM:9207:+	INCL_NON_REF_SPLICE	YES	1129	0	0.01	1	0.0555	0.0092	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	COV318_OVARY	0.01	1	0.0647	FALSE	0	0	0	3	0	FALSE	ACH-000256
COV318_OVARY	GNGT1--AC002076.10	4	6	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	9	4	0.53	0.71	0.037	0.0555	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	COV318_OVARY	0.53	0.71	0.0925	FALSE	0	10	0	30	0	FALSE	ACH-000256
COV318_OVARY	AP003900.6--AC011718.2	4	5	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.037	0.0462	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	COV318_OVARY	0.82	1	0.0832	TRUE	0	1	0	26	1	FALSE	ACH-000256
COV318_OVARY	CAPZA2--SRP9	5	1	CAPZA2	3371	chr7:116502704:+	SRP9	25493	chr1:225965637:+	ONLY_REF_SPLICE	YES	86	41	0.07	0.13	0.0462	0.0092	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	COV318_OVARY	0.07	0.13	0.0554	TRUE	0	0	0	9	0	FALSE	ACH-000256
COV318_OVARY	CTD-2251F13.1--PRKD1	5	1	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0462	0.0092	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	COV318_OVARY	1	1	0.0554	TRUE	0	3	0	8	3	TRUE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	3	9	MT-ND6	1370	chrM:14304:-	MT-TE	4590	chrM:14678:-	INCL_NON_REF_SPLICE	YES	217	0	0.05	1	0.0277	0.0832	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.05	1	0.1109	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	3	8	MT-ND6	1145	chrM:14529:-	MT-TE	4591	chrM:14677:-	INCL_NON_REF_SPLICE	YES	7	0	0.61	1	0.0277	0.074	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.61	1	0.1017	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	GNGT1--AC002076.10	4	2	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	10	4	0.38	0.6	0.037	0.0185	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	COV318_OVARY	0.38	0.6	0.0555	FALSE	0	28	0	37	0	FALSE	ACH-000256
COV318_OVARY	RP11-444D3.1--SOX5	3	6	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	7	1	0.56	0.0277	0.0555	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	COV318_OVARY	0.56	1	0.0832	TRUE	274	363	69	150	0	FALSE	ACH-000256
COV318_OVARY	FUBP1--IVNS1ABP	4	1	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	270	316	0.02	0.02	0.037	0.0092	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	COV318_OVARY	0.02	0.02	0.0462	TRUE	1	4	0	16	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	3	5	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0277	0.0462	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	0.8	1	0.0739	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	1	1	0.037	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	1	1	0.037	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TN	4	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	0.037	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	MTA3--ABCG8	4	0	MTA3	6240	chr2:42806340:+	ABCG8	41273	chr2:44099115:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	{Klijn_CCL:Ovary=1},MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3,ABCG8->ATP_binding_cassette_subfamily_G_member_8,chr2:44066103-44105605:+	COV318_OVARY	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	RP11-108K3.1--GLDN	3	4	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.0277	0.037	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	COV318_OVARY	0.88	1	0.0647	FALSE	0	19	0	46	0	FALSE	ACH-000256
COV318_OVARY	FGFR2--COL14A1	3	2	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	26	9	0.16	0.36	0.0277	0.0185	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	COV318_OVARY	0.16	0.36	0.0462	TRUE	0	0	0	32	0	FALSE	ACH-000256
COV318_OVARY	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0277	0.0092	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COV318_OVARY	0.8	1	0.0369	FALSE	515	4851	409	746	0	FALSE	ACH-000256
COV318_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1031	chrM:14643:-	MT-TE	4590	chrM:14678:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV318_OVARY	1	1	0.0277	FALSE	499	1288	110	792	0	FALSE	ACH-000256
COV318_OVARY	MT-TA--MT-TN	3	0	MT-TA	1072	chrM:5584:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0277	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	COV318_OVARY	1	1	0.0277	FALSE	369	2501	205	193	0	FALSE	ACH-000256
COV318_OVARY	MALAT1--SPDYC	2	2	MALAT1	5632	chr11:65269864:+	SPDYC	14433	chr11:64939414:+	ONLY_REF_SPLICE	YES	112	0	0.03	1	0.0185	0.0185	MALAT1->chr11:65265233-65273940:+,metastasis_associated_lung_adenocarcinoma_transcript_1_(non-protein_coding),SPDYC->chr11:64937625-64940715:+,speedy/RINGO_cell_cycle_regulator_family_member_C	COV318_OVARY	0.03	1	0.037	TRUE	0	0	0	1	0	FALSE	ACH-000256
COV318_OVARY	RP11-108K3.1--GLDN	2	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0.0185	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	COV318_OVARY	1	1	0.037	FALSE	1	20	0	46	0	FALSE	ACH-000256
COV318_OVARY	ERCC6--PCDH15	2	1	ERCC6	3013	chr10:50740589:-	PCDH15	33319	chr10:56926411:-	ONLY_REF_SPLICE	YES	12	0	0.2	1	0.0185	0.0092	ERCC6->Oncogene{Bushman},chr10:50663414-50747584:-,excision_repair_cross-complementation_group_6,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	COV318_OVARY	0.2	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.33	1	0.0185	0.0092	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COV318_OVARY	0.33	1	0.0277	FALSE	125	705	46	456	0	FALSE	ACH-000256
COV318_OVARY	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0185	0.0092	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COV318_OVARY	0.75	1	0.0277	FALSE	407	2205	196	549	0	FALSE	ACH-000256
COV318_OVARY	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0185	0.0092	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COV318_OVARY	0.6	1	0.0277	FALSE	467	2173	244	435	0	FALSE	ACH-000256
COV318_OVARY	SUPT3H--OVOL2	2	1	SUPT3H	2744	chr6:45332938:-	OVOL2	26762	chr20:18022367:-	ONLY_REF_SPLICE	YES	22	7	0.12	0.3	0.0185	0.0092	SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	COV318_OVARY	0.12	0.3	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	CAPZA1--RPS27A	2	0	CAPZA1	1711	chr1:113162505:+	RPS27A	16867	chr2:55459944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	CAPZA1->capping_actin_protein_of_muscle_Z-line_alpha_subunit_1,chr1:113161795-113214241:+,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	CPSF3L--WDR82	2	0	CPSF3L	1111	chr1:1259961:-	WDR82	22561	chr3:52301034:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	CPSF3L->chr1:1246965-1260071:-,cleavage_and_polyadenylation_specific_factor_3-like,WDR82->Oncogene{Bushman},WD_repeat_domain_82,chr3:52288437-52322036:-	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1069	chr14:30766181:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	COV318_OVARY	1	1	0.0185	TRUE	0	3	0	9	3	TRUE	ACH-000256
COV318_OVARY	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	COV318_OVARY	1	1	0.0185	TRUE	0	1	0	7	1	TRUE	ACH-000256
COV318_OVARY	DDX17--EIF4G3	2	0	DDX17	11449	chr22:38888061:-	EIF4G3	27736	chr1:21437876:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	EMG1--MKI67	2	0	EMG1	2414	chr12:7080253:+	MKI67	15854	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	EMG1->EMG1_N1-specific_pseudouridine_methyltransferase,chr12:7072408-7105520:+,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	GATAD2B--UBAP2L	2	0	GATAD2B	1243	chr1:153895209:-	UBAP2L	21454	chr1:154197560:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	HIST2H4A--RBBP8	2	0	HIST2H4A	2210	chr1:149805430:+	RBBP8	17787	chr18:20526407:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	HIST2H4A->chr1:149804221-149811339:+,histone_cluster_2,_H4a,RBBP8->Oncogene{Bushman},chr18:20378224-20606451:+,retinoblastoma_binding_protein_8	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	KIAA1958--SNX30	2	0	KIAA1958	3467	chr9:115337531:+	SNX30	22440	chr9:115567056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	{Klijn_CCL:Lung=1,Colo-Rectal=1},NEIGHBORS[81441],KIAA1958->KIAA1958,chr9:115249127-115431677:+,SNX30->chr9:115513118-115643951:+,sorting_nexin_family_member_30	COV318_OVARY	1	1	0.0185	FALSE	5	9	0	7	0	FALSE	ACH-000256
COV318_OVARY	MATR3--CTNNA1	2	0	MATR3	9772	chr5:138629494:+	CTNNA1	45982	chr5:138145727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	COV318_OVARY	1	1	0.0185	TRUE	3	14	0	14	0	FALSE	ACH-000256
COV318_OVARY	MRPS21--SF3B1	2	0	MRPS21	1581	chr1:150266869:+	SF3B1	26360	chr2:198257912:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	MRPS21->chr1:150266289-150281414:+,mitochondrial_ribosomal_protein_S21,SF3B1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:198254508-198299815:-,splicing_factor_3b_subunit_1	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	PARP11--GNAS	2	0	PARP11	1231	chr12:3982378:-	GNAS	36777	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	PARP11->chr12:3900213-3982608:-,poly(ADP-ribose)_polymerase_family_member_11,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	TEAD1--DEFB126	2	0	TEAD1	14839	chr11:12923660:+	DEFB126	30095	chr20:126056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,DEFB126->chr20:123010-126392:+,defensin_beta_126	COV318_OVARY	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	4	1	0.5	0.0092	0.0277	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COV318_OVARY	0.5	1	0.0369	FALSE	93	270	15	244	0	FALSE	ACH-000256
COV318_OVARY	AC011997.1--PLCL1	1	1	AC011997.1	3224	chr2:198636638:+	PLCL1	11793	chr2:198948482:+	ONLY_REF_SPLICE	YES	6	2	0.25	0.5	0.0092	0.0092	NEIGHBORS[29879],AC011997.1->chr2:198557830-198639547:+,PLCL1->Oncogene{Bushman},chr2:198669426-199437305:+,phospholipase_C_like_1	COV318_OVARY	0.25	0.5	0.0184	FALSE	0	9	0	3	0	FALSE	ACH-000256
COV318_OVARY	AC011997.1--PLCL1	1	1	AC011997.1	3224	chr2:198636638:+	PLCL1	10736	chr2:198866676:+	ONLY_REF_SPLICE	YES	6	2	0.25	0.5	0.0092	0.0092	NEIGHBORS[29879],AC011997.1->chr2:198557830-198639547:+,PLCL1->Oncogene{Bushman},chr2:198669426-199437305:+,phospholipase_C_like_1	COV318_OVARY	0.25	0.5	0.0184	FALSE	0	5	0	3	0	FALSE	ACH-000256
COV318_OVARY	CAPZA2--UBB	1	1	CAPZA2	3371	chr7:116502704:+	UBB	26491	chr17:16285216:+	ONLY_REF_SPLICE	YES	86	110	0.02	0.02	0.0092	0.0092	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	COV318_OVARY	0.02	0.02	0.0184	TRUE	0	0	0	5	0	FALSE	ACH-000256
COV318_OVARY	CTD-2251F13.1--PRKD1	1	1	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	12223	chr14:30660656:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0092	0.0092	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	COV318_OVARY	1	1	0.0184	TRUE	0	0	0	4	0	TRUE	ACH-000256
COV318_OVARY	HMGA2--CHMP1A	1	1	HMGA2	3338	chr12:66221867:+	CHMP1A	31922	chr16:89713739:-	ONLY_REF_SPLICE	YES	508	207	0	0.01	0.0092	0.0092	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},{Klijn_CCL:Lung=1},HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	COV318_OVARY	0	0.01	0.0184	FALSE	0	1	0	2	0	FALSE	ACH-000256
COV318_OVARY	IFI6--GNAS	1	1	IFI6	2198	chr1:27995756:-	GNAS	23469	chr20:57470667:+	ONLY_REF_SPLICE	YES	4558	1521	0	0	0.0092	0.0092	IFI6->chr1:27992572-27998729:-,interferon_alpha_inducible_protein_6,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	COV318_OVARY	0	0	0.0184	FALSE	0	1	0	1	1	FALSE	ACH-000256
COV318_OVARY	MYL6--CSDE1	1	1	MYL6	2462	chr12:56553406:+	CSDE1	17351	chr1:115282346:-	ONLY_REF_SPLICE	NO	89	641	0.02	0	0.0092	0.0092	MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	COV318_OVARY	0	0.02	0.0184	FALSE	0	1	0	3	0	FALSE	ACH-000256
COV318_OVARY	OIP5-AS1--SAE1	1	1	OIP5-AS1	3111	chr15:41578298:+	SAE1	32925	chr19:47673075:+	ONLY_REF_SPLICE	YES	74	273	0.03	0.01	0.0092	0.0092	OIP5-AS1->OIP5_antisense_RNA_1,chr15:41576188-41601901:+,SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+	COV318_OVARY	0.01	0.03	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000256
COV318_OVARY	PDE7B--ZP3	1	1	PDE7B	9015	chr6:136476896:+	ZP3	23134	chr7:76054369:+	ONLY_REF_SPLICE	YES	7	14	0.22	0.12	0.0092	0.0092	PDE7B->chr6:136172834-136516712:+,phosphodiesterase_7B,ZP3->chr7:76026835-76071388:+,zona_pellucida_glycoprotein_3_(sperm_receptor)	COV318_OVARY	0.12	0.22	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000256
COV318_OVARY	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	1	4	0.67	0.33	0.0092	0.0092	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	COV318_OVARY	0.33	0.67	0.0184	FALSE	0	23	1	67	0	FALSE	ACH-000256
COV318_OVARY	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	11	0.67	0.15	0.0092	0.0092	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	COV318_OVARY	0.15	0.67	0.0184	FALSE	16	356	14	466	0	FALSE	ACH-000256
COV318_OVARY	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	NO	2	698	0.5	0	0.0092	0.0092	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	COV318_OVARY	0	0.5	0.0184	FALSE	0	59	0	125	0	FALSE	ACH-000256
COV318_OVARY	SUPT3H--OVOL2	1	1	SUPT3H	3833	chr6:45290616:-	OVOL2	24442	chr20:18037521:-	ONLY_REF_SPLICE	YES	22	3	0.08	0.4	0.0092	0.0092	SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	COV318_OVARY	0.08	0.4	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000256
BT549_BREAST	TIMM23B--LINC00843	41	7	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3518	0.0601	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BT549_BREAST	1	1	0.4119	TRUE	508	994	45	981	0	FALSE	ACH-000288
BT549_BREAST	ARIH2--SOS1	37	17	ARIH2	9799	chr3:48982614:+	SOS1	52613	chr2:39216455:-	ONLY_REF_SPLICE	YES	82	9	0.4	0.86	0.3175	0.1459	ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	BT549_BREAST	0.4	0.86	0.4634	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	C1orf101--DESI2	22	8	C1orf101	14238	chr1:244724447:+	DESI2	38816	chr1:244868858:+	ONLY_REF_SPLICE	YES	0	27	1	0.53	0.1888	0.0686	NEIGHBORS[11758],C1orf101->chr1:244617679-244804479:+,chromosome_1_open_reading_frame_101,DESI2->chr1:244816237-244872335:+,desumoylating_isopeptidase_2	BT549_BREAST	0.53	1	0.2574	FALSE	0	0	0	1	0	FALSE	ACH-000288
BT549_BREAST	PLXDC1--TAF13	23	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1974	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	BT549_BREAST	1	1	0.1974	TRUE	7	10	0	216	0	FALSE	ACH-000288
BT549_BREAST	NAA25--HECTD4	19	9	NAA25	24259	chr12:112478285:-	HECTD4	96003	chr12:112623297:-	ONLY_REF_SPLICE	YES	28	8	0.5	0.78	0.163	0.0772	LOCAL_REARRANGEMENT:-:[51166],NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-	BT549_BREAST	0.5	0.78	0.2402	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	MT-TA--MT-TC	14	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1201	0.0172	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BT549_BREAST	1	1	0.1373	FALSE	462	80	0	856	0	FALSE	ACH-000288
BT549_BREAST	ZNF654--HMGB2	13	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1116	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	BT549_BREAST	1	1	0.1116	TRUE	0	0	0	518	0	FALSE	ACH-000288
BT549_BREAST	ARIH2--SOS1	8	15	ARIH2	7108	chr3:48965246:+	SOS1	52613	chr2:39216455:-	ONLY_REF_SPLICE	YES	98	9	0.19	0.72	0.0686	0.1287	ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	BT549_BREAST	0.19	0.72	0.1973	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	C1orf101--DESI2	11	0	C1orf101	9109	chr1:244662381:+	DESI2	38816	chr1:244868858:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0944	0	NEIGHBORS[11758],C1orf101->chr1:244617679-244804479:+,chromosome_1_open_reading_frame_101,DESI2->chr1:244816237-244872335:+,desumoylating_isopeptidase_2	BT549_BREAST	1	1	0.0944	FALSE	0	0	0	1	0	FALSE	ACH-000288
BT549_BREAST	C15orf57--CBX3	10	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	8	21	0.62	0.38	0.0858	0.0257	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BT549_BREAST	0.38	0.62	0.1115	TRUE	267	562	48	632	0	FALSE	ACH-000288
BT549_BREAST	ARIH2--SOS1	7	12	ARIH2	7108	chr3:48965246:+	SOS1	53792	chr2:39214732:-	ONLY_REF_SPLICE	YES	98	16	0.16	0.54	0.0601	0.103	ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	BT549_BREAST	0.16	0.54	0.1631	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	EIF3D--MYH9	8	3	EIF3D	3936	chr22:36921711:-	MYH9	45363	chr22:36693060:-	ONLY_REF_SPLICE	YES	235	878	0.04	0.01	0.0686	0.0257	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	BT549_BREAST	0.01	0.04	0.0943	FALSE	0	0	0	1	0	FALSE	ACH-000288
BT549_BREAST	MT-ND6--MT-TE	8	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0.0086	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT549_BREAST	1	1	0.0772	FALSE	499	1288	110	792	0	FALSE	ACH-000288
BT549_BREAST	MT-ND6--MT-TE	8	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0.0086	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT549_BREAST	1	1	0.0772	FALSE	499	1288	110	792	0	FALSE	ACH-000288
BT549_BREAST	PRR16--CTD-2334D19.1	6	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	60	0	0.15	1	0.0515	0.0429	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	BT549_BREAST	0.15	1	0.0944	FALSE	56	216	12	147	0	FALSE	ACH-000288
BT549_BREAST	ARIH2--SOS1	4	12	ARIH2	9799	chr3:48982614:+	SOS1	53792	chr2:39214732:-	ONLY_REF_SPLICE	YES	82	16	0.16	0.5	0.0343	0.103	ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	BT549_BREAST	0.16	0.5	0.1373	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	XXbac-BPG252P9.9--TUBBP2	7	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0601	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	BT549_BREAST	1	1	0.0601	TRUE	0	1	0	48	1	FALSE	ACH-000288
BT549_BREAST	MT-ND6--MT-TE	6	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0515	0.0172	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT549_BREAST	1	1	0.0687	FALSE	499	1288	110	792	0	FALSE	ACH-000288
BT549_BREAST	NEURL1B--C1orf101	5	6	NEURL1B	1172	chr5:172068440:+	C1orf101	21840	chr1:244662304:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0429	0.0515	NEURL1B->chr5:172068269-172118543:+,neuralized_E3_ubiquitin_protein_ligase_1B,C1orf101->chr1:244617679-244804479:+,chromosome_1_open_reading_frame_101	BT549_BREAST	1	1	0.0944	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	C15orf57--CBX3	6	1	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	8	21	0.47	0.25	0.0515	0.0086	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BT549_BREAST	0.25	0.47	0.0601	TRUE	267	562	48	632	0	FALSE	ACH-000288
BT549_BREAST	NEURL1B--C1orf101	5	5	NEURL1B	1172	chr5:172068440:+	C1orf101	23969	chr1:244681894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0429	0.0429	NEURL1B->chr5:172068269-172118543:+,neuralized_E3_ubiquitin_protein_ligase_1B,C1orf101->chr1:244617679-244804479:+,chromosome_1_open_reading_frame_101	BT549_BREAST	1	1	0.0858	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	NEURL1B--C1orf101	6	1	NEURL1B	1172	chr5:172068440:+	C1orf101	26569	chr1:244723970:+	ONLY_REF_SPLICE	YES	0	2	1	0.78	0.0515	0.0086	NEURL1B->chr5:172068269-172118543:+,neuralized_E3_ubiquitin_protein_ligase_1B,C1orf101->chr1:244617679-244804479:+,chromosome_1_open_reading_frame_101	BT549_BREAST	0.78	1	0.0601	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	NEURL1B--DESI2	4	8	NEURL1B	1172	chr5:172068440:+	DESI2	20435	chr1:244868858:+	ONLY_REF_SPLICE	YES	0	27	1	0.31	0.0343	0.0686	NEURL1B->chr5:172068269-172118543:+,neuralized_E3_ubiquitin_protein_ligase_1B,DESI2->chr1:244816237-244872335:+,desumoylating_isopeptidase_2	BT549_BREAST	0.31	1	0.1029	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	PRR16--CTD-2334D19.1	4	7	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	43	0	0.2	1	0.0343	0.0601	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	BT549_BREAST	0.2	1	0.0944	FALSE	21	45	1	60	0	FALSE	ACH-000288
BT549_BREAST	ARIH2--SOS1	1	17	ARIH2	10830	chr3:48986529:+	SOS1	52613	chr2:39216455:-	ONLY_REF_SPLICE	YES	82	9	0.18	0.67	0.0086	0.1459	ARIH2->ariadne_RBR_E3_ubiquitin_protein_ligase_2,chr3:48956254-49023815:+,SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-	BT549_BREAST	0.18	0.67	0.1545	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	DNAJC8--ATRX	5	0	DNAJC8	10740	chr1:28527831:-	ATRX	44601	chrX:76855030:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0	DNAJC8->DnaJ_heat_shock_protein_family_(Hsp40)_member_C8,chr1:28525967-28559536:-,ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-	BT549_BREAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	SFPQ--MTATP6P1	5	0	SFPQ	1512	chr1:35658238:-	MTATP6P1	19209	chr1:569360:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0	SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	BT549_BREAST	1	1	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	CCDC174--ZCCHC7	4	1	CCDC174	5556	chr3:14703214:+	ZCCHC7	24373	chr9:37302185:+	ONLY_REF_SPLICE	YES	17	32	0.23	0.14	0.0343	0.0086	CCDC174->chr3:14693271-14714166:+,coiled-coil_domain_containing_174,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	BT549_BREAST	0.14	0.23	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	GOLT1B--UNKL	4	1	GOLT1B	1168	chr12:21654882:+	UNKL	32466	chr16:1421612:-	ONLY_REF_SPLICE	YES	94	1	0.05	0.83	0.0343	0.0086	GOLT1B->chr12:21654715-21671342:+,golgi_transport_1B,UNKL->chr16:1413206-1464752:-,unkempt_family_like_zinc_finger	BT549_BREAST	0.05	0.83	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	NRP1--LINC00838	4	0	NRP1	8745	chr10:33542956:-	LINC00838	37213	chr10:34056274:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	NRP1->chr10:33466420-33625190:-,neuropilin_1,LINC00838->chr10:34048641-34061586:-,long_intergenic_non-protein_coding_RNA_838	BT549_BREAST	1	1	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	NEURL1B--C1orf101	3	3	NEURL1B	1172	chr5:172068440:+	C1orf101	25076	chr1:244715624:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0257	0.0257	NEURL1B->chr5:172068269-172118543:+,neuralized_E3_ubiquitin_protein_ligase_1B,C1orf101->chr1:244617679-244804479:+,chromosome_1_open_reading_frame_101	BT549_BREAST	0.86	1	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0.0172	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BT549_BREAST	1	1	0.0429	FALSE	462	80	0	856	0	FALSE	ACH-000288
BT549_BREAST	ACTB--MT-CO3	3	1	ACTB	7605	chr7:5567043:-	MT-CO3	11064	chrM:9404:+	INCL_NON_REF_SPLICE	YES	3420	6487	0	0	0.0257	0.0086	ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BT549_BREAST	0	0	0.0343	FALSE	0	0	0	1	0	FALSE	ACH-000288
BT549_BREAST	XXbac-BPG252P9.9--TUBBP2	3	1	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	NO	1775	0	0	1	0.0257	0.0086	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	BT549_BREAST	0	1	0.0343	FALSE	0	1	0	48	1	FALSE	ACH-000288
BT549_BREAST	AC142528.1--RPS18	3	0	AC142528.1	1202	chr2:3523247:+	RPS18	6056	chr6:33239868:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	AC142528.1->chr2:3523046-3526968:+,RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	ACTB--MT-CO3	3	0	ACTB	4493	chr7:5570155:-	MT-CO3	10908	chrM:9248:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BT549_BREAST	1	1	0.0257	FALSE	0	0	0	1	0	FALSE	ACH-000288
BT549_BREAST	CTD-2337A12.1--CAST	3	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	BT549_BREAST	1	1	0.0257	TRUE	347	1186	183	220	0	FALSE	ACH-000288
BT549_BREAST	IL27RA--EXT1	3	0	IL27RA	10040	chr19:14163314:+	EXT1	14082	chr8:119123480:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	IL27RA->chr19:14142560-14163743:+,interleukin_27_receptor_subunit_alpha,EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	IPO4--SCAMP3	3	0	IPO4	6167	chr14:24653004:-	SCAMP3	12996	chr1:155231972:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	IPO4->chr14:24649425-24658170:-,importin_4,SCAMP3->chr1:155225770-155232221:-,secretory_carrier_membrane_protein_3	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BT549_BREAST	1	1	0.0257	FALSE	499	1288	110	792	0	FALSE	ACH-000288
BT549_BREAST	PALD1--PEX19	3	0	PALD1	11582	chr10:72299467:+	PEX19	27826	chr1:160249415:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	PALD1->chr10:72238577-72328205:+,phosphatase_domain_containing,_paladin_1,PEX19->chr1:160246602-160256138:-,peroxisomal_biogenesis_factor_19	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	PELP1--ATP5F1	3	0	PELP1	10708	chr17:4575423:-	ATP5F1	19400	chr1:112002200:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	PELP1->chr17:4574679-4607632:-,proline,_glutamate_and_leucine_rich_protein_1,ATP5F1->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_B1,chr1:111991486-112005395:+	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	PSMD14--RPSA	3	0	PSMD14	17510	chr2:162265410:+	RPSA	22956	chr3:39449209:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14,RPSA->chr3:39448180-39454033:+,ribosomal_protein_SA	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	RPL27--LAPTM4B	3	0	RPL27	2719	chr17:41152008:+	LAPTM4B	14357	chr8:98863628:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	RPL27->chr17:41150290-41154976:+,ribosomal_protein_L27,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	TJAP1--USP13	3	0	TJAP1	11083	chr6:43472757:+	USP13	43149	chr3:179506624:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	TJAP1->chr6:43445261-43474294:+,tight_junction_associated_protein_1,USP13->chr3:179370543-179507189:+,ubiquitin_specific_peptidase_13_(isopeptidase_T-3)	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	TNKS1BP1--PDHA1	3	0	TNKS1BP1	15729	chr11:57068031:-	PDHA1	30893	chrX:19377046:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	TNKS1BP1->chr11:57067112-57092426:-,tankyrase_1_binding_protein_1,PDHA1->chrX:19362011-19379823:+,pyruvate_dehydrogenase_(lipoamide)_alpha_1	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	XXbac-BPG252P9.9--MT-CO3	3	0	XXbac-BPG252P9.9	1353	chr6:30691302:-	MT-CO3	5390	chrM:9823:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	XXbac-BPG252P9.9->chr6:30690882-30691654:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BT549_BREAST	1	1	0.0257	FALSE	0	0	0	1	0	FALSE	ACH-000288
BT549_BREAST	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1083	chr6:30691572:-	TUBBP2	4900	chr13:41959193:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	BT549_BREAST	1	1	0.0257	TRUE	0	1	0	48	1	FALSE	ACH-000288
BT549_BREAST	ZFAS1--PARK7	3	0	ZFAS1	3117	chr20:47897107:+	PARK7	17620	chr1:8045143:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,PARK7->Parkinsonism_associated_deglycase,chr1:8014351-8045565:+	BT549_BREAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0.0172	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BT549_BREAST	1	1	0.0344	FALSE	515	4851	409	746	0	FALSE	ACH-000288
BT549_BREAST	PRR16--CTD-2334D19.1	1	5	PRR16	5763	chr5:119952887:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	NO	64	0	0.09	1	0.0086	0.0429	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	BT549_BREAST	0.09	1	0.0515	FALSE	0	3	0	8	0	FALSE	ACH-000288
BT549_BREAST	AC027763.2--UAP1	2	0	AC027763.2	1154	chr17:6915515:-	UAP1	20117	chr1:162551077:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	AC027763.2->chr17:6779954-6915668:-,UAP1->UDP-N-acetylglucosamine_pyrophosphorylase_1,chr1:162531323-162569627:+	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	AKT1--UBE2B	2	0	AKT1	6360	chr14:105246425:-	UBE2B	27483	chr5:133725916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	AKT1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr14:105235686-105262088:-,v-akt_murine_thymoma_viral_oncogene_homolog_1,UBE2B->chr5:133706870-133727683:+,ubiquitin_conjugating_enzyme_E2_B	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	C1orf101--DESI2	2	0	C1orf101	11267	chr1:244682000:+	DESI2	38816	chr1:244868858:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	NEIGHBORS[11758],C1orf101->chr1:244617679-244804479:+,chromosome_1_open_reading_frame_101,DESI2->chr1:244816237-244872335:+,desumoylating_isopeptidase_2	BT549_BREAST	1	1	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000288
BT549_BREAST	C7orf60--ZC3HC1	2	0	C7orf60	3917	chr7:112555361:-	ZC3HC1	15440	chr7:129688984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	C7orf60->chr7:112459202-112579971:-,ZC3HC1->chr7:129658126-129691291:-,zinc_finger_C3HC-type_containing_1	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	CCDC14--MRPL3	2	0	CCDC14	1574	chr3:123679991:-	MRPL3	32635	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	CCM2--GPC1	2	0	CCM2	1889	chr7:45039962:+	GPC1	27344	chr2:241398447:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	CCM2->CCM2_scaffolding_protein,chr7:45039074-45116068:+,GPC1->chr2:241375088-241407493:+,glypican_1	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	DVL2--FAM20A	2	0	DVL2	4439	chr17:7132288:-	FAM20A	13195	chr17:66586490:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	DVL2->chr17:7128660-7137864:-,dishevelled_segment_polarity_protein_2,FAM20A->chr17:66531254-66597530:-,family_with_sequence_similarity_20_member_A	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	ERBB2IP--KIF2A	2	0	ERBB2IP	3473	chr5:65284510:+	KIF2A	57426	chr5:61669514:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	ERBB2IP->chr5:65222303-65378377:+,KIF2A->chr5:61601989-61833076:+,kinesin_heavy_chain_member_2A	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	HLCS--PRKDC	2	0	HLCS	15849	chr21:38137313:-	PRKDC	39660	chr8:48843347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	HLCS->chr21:38123189-38362536:-,holocarboxylase_synthetase,PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	KLRG1--ABI1	2	0	KLRG1	1193	chr12:9102832:+	ABI1	15386	chr10:27112234:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	KLRG1->chr12:9102640-9163356:+,killer_cell_lectin_like_receptor_G1,ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	MAP4--PIP4K2A	2	0	MAP4	28587	chr3:47912303:-	PIP4K2A	46954	chr10:22898646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	MINOS1--CAPZB	2	0	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	BT549_BREAST	1	1	0.0172	TRUE	2	7	0	21	0	FALSE	ACH-000288
BT549_BREAST	MLF1IP--SDHA	2	0	MLF1IP	4003	chr4:185650072:-	SDHA	26600	chr5:228300:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	MLF1IP->chr4:185615772-185655287:-,SDHA->ArcherDX_panel,FoundationOne_panel,chr5:218356-256815:+,succinate_dehydrogenase_complex_flavoprotein_subunit_A	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	NCOA3--FAM156B	2	0	NCOA3	1163	chr20:46130763:+	FAM156B	33047	chrX:52928085:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,FAM156B->chrX:52920336-52937587:+,family_with_sequence_similarity_156_member_B	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	PCNT--DHFR	2	0	PCNT	4674	chr21:47754682:+	DHFR	60225	chr5:79924984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	PCNT->chr21:47744036-47865682:+,pericentrin,DHFR->chr5:79922047-79950802:-,dihydrofolate_reductase	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	POLE4--RP11-355F16.1	2	0	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	BT549_BREAST	1	1	0.0172	TRUE	5	7	0	37	0	FALSE	ACH-000288
BT549_BREAST	PON2--LINC01006	2	0	PON2	5645	chr7:95045554:-	LINC01006	24018	chr7:156265405:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	PON2->chr7:95034175-95064510:-,paraoxonase_2,LINC01006->chr7:156264890-156433286:-,long_intergenic_non-protein_coding_RNA_1006	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	RNF216--PKNOX1	2	0	RNF216	8751	chr7:5792477:-	PKNOX1	37002	chr21:44427601:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	RNF216->Oncogene{Bushman},chr7:5659678-5821370:-,ring_finger_protein_216,PKNOX1->Oncogene{Bushman},PBX/knotted_1_homeobox_1,chr21:44394620-44453691:+	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	RP11-390F4.6--DGCR8	2	0	RP11-390F4.6	1130	chr9:6646085:+	DGCR8	10619	chr22:20077499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	RP11-390F4.6->chr9:6645956-6670635:+,DGCR8->DGCR8_microprocessor_complex_subunit,chr22:20067755-20099400:+	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	SFPQ--RABGAP1L	2	0	SFPQ	1927	chr1:35657823:-	RABGAP1L	40997	chr1:174606513:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	SNRPA1--EFTUD1	2	0	SNRPA1	1186	chr15:101835302:-	EFTUD1	37725	chr15:82422902:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	SNRPA1->chr15:101821715-101835487:-,small_nuclear_ribonucleoprotein_polypeptide_A',EFTUD1->chr15:82422571-82555104:-	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	SPEN--EXO1	2	0	SPEN	1287	chr1:16174645:+	EXO1	42706	chr1:242042051:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,EXO1->chr1:242011269-242058450:+,exonuclease_1	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	SYT17--PAPD7	2	0	SYT17	1691	chr16:19179983:+	PAPD7	21154	chr5:6737623:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	SYT17->chr16:19179293-19279652:+,synaptotagmin_17,PAPD7->PAP_associated_domain_containing_7,chr5:6714718-6757161:+	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	TNS3--GNAS	2	0	TNS3	7594	chr7:47568634:-	GNAS	64464	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	TNS3->chr7:47314752-47622156:-,tensin_3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	TRA2B--ACOT7	2	0	TRA2B	1312	chr3:185655613:-	ACOT7	37606	chr1:6355040:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	TRIP12--LUC7L2	2	0	TRIP12	36526	chr2:230650473:-	LUC7L2	54885	chr7:139083345:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	TSSK3--H2AFV	2	0	TSSK3	2180	chr1:32818403:+	H2AFV	13994	chr7:44874161:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	TSSK3->chr1:32817122-32829913:+,testis_specific_serine_kinase_3,H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	UBE2G2--GGCT	2	0	UBE2G2	7524	chr21:46197214:-	GGCT	23299	chr7:30536851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	UBE2G2->chr21:46188955-46221934:-,ubiquitin_conjugating_enzyme_E2_G2,GGCT->chr7:30536237-30591095:-,gamma-glutamylcyclotransferase	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	USO1--UBE2D2	2	0	USO1	1293	chr4:76650069:+	UBE2D2	31421	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	USO1->USO1_vesicle_transport_factor,chr4:76649777-76735382:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	XRCC5--RPL37A	2	0	XRCC5	2602	chr2:216974180:+	RPL37A	31413	chr2:217363993:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	BT549_BREAST	1	1	0.0172	TRUE	1	1	0	8	1	TRUE	ACH-000288
BT549_BREAST	YBEY--NOP58	2	0	YBEY	1787	chr21:47707037:+	NOP58	19804	chr2:203160397:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	YBEY->chr21:47706251-47717665:+,ybeY_metallopeptidase_(putative),NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	ZCCHC8--SLC25A37	2	0	ZCCHC8	13554	chr12:122962388:-	SLC25A37	26338	chr8:23425835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	ZCCHC8->chr12:122957417-122985518:-,zinc_finger_CCHC-type_containing_8,SLC25A37->chr8:23386318-23432976:+,solute_carrier_family_25_member_37	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	ZNF606--TCOF1	2	0	ZNF606	4517	chr19:58511176:-	TCOF1	22114	chr5:149751569:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	ZNF606->chr19:58488421-58514717:-,zinc_finger_protein_606,TCOF1->chr5:149737202-149779871:+,treacle_ribosome_biogenesis_factor_1	BT549_BREAST	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000288
BT549_BREAST	ENO1--CALR	1	2	ENO1	11575	chr1:8923294:-	CALR	19986	chr19:13054351:+	ONLY_REF_SPLICE	YES	5444	2971	0	0	0.0086	0.0172	GTEx&tcga_normals:1/3694=0.03%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,CALR->calreticulin,chr19:13049392-13055303:+	BT549_BREAST	0	0	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000288
BT549_BREAST	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0086	0.0172	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BT549_BREAST	1	1	0.0258	FALSE	467	2173	244	435	0	FALSE	ACH-000288
BT549_BREAST	CENPK--CHMP1A	1	1	CENPK	14117	chr5:64817302:-	CHMP1A	23763	chr16:89713739:-	ONLY_REF_SPLICE	YES	71	69	0.03	0.03	0.0086	0.0086	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Cells_-_Transformed_fibroblasts=1},{Klijn_CCL:Skin=1},CENPK->centromere_protein_K,chr5:64813593-64858998:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	BT549_BREAST	0.03	0.03	0.0172	TRUE	1	1	0	3	0	FALSE	ACH-000288
BT549_BREAST	GOLT1B--UNKL	1	1	GOLT1B	1168	chr12:21654882:+	UNKL	33559	chr16:1420358:-	ONLY_REF_SPLICE	YES	94	16	0.02	0.11	0.0086	0.0086	GOLT1B->chr12:21654715-21671342:+,golgi_transport_1B,UNKL->chr16:1413206-1464752:-,unkempt_family_like_zinc_finger	BT549_BREAST	0.02	0.11	0.0172	TRUE	0	0	0	1	0	FALSE	ACH-000288
BT549_BREAST	LHFPL2--RPS4X	1	1	LHFPL2	12046	chr5:77860636:-	RPS4X	27283	chrX:71493822:-	ONLY_REF_SPLICE	NO	77	1828	0.03	0	0.0086	0.0086	LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,RPS4X->chrX:71475529-71497150:-,ribosomal_protein_S4,_X-linked	BT549_BREAST	0	0.03	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000288
BT549_BREAST	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	5	33	0.29	0.06	0.0086	0.0086	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	BT549_BREAST	0.06	0.29	0.0172	FALSE	16	356	14	466	0	FALSE	ACH-000288
BT549_BREAST	STAM--PTPLA	1	1	STAM	1255	chr10:17686378:+	PTPLA	22078	chr10:17646046:-	ONLY_REF_SPLICE	YES	134	501	0.01	0	0.0086	0.0086	LOCAL_INVERSION:+:-:[26748],STAM->chr10:17686124-17757913:+,signal_transducing_adaptor_molecule,PTPLA->chr10:17631958-17659376:-	BT549_BREAST	0	0.01	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000288
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	215	118	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	327	7	0.5	0.98	2.222	1.2195	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.98	3.4415	TRUE	267	562	48	632	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	156	94	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	6	1	0.98	1	1.6122	0.9715	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	2.5837	TRUE	0	48	0	65	48	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	116	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1988	0.186	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.3848	TRUE	508	994	45	981	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0125--IGH@	100	60	KIAA0125	1334	chr14:106384171:+	IGH@	124905	chr14:106175001:-	INCL_NON_REF_SPLICE	YES	30	149	0.84	0.52	1.0335	0.6201	KIAA0125->KIAA0125,chr14:106383838-106391825:+,IGH@->Oncogene{Bushman}	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.84	1.6536	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	91	75	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	309	7	0.35	0.96	0.9405	0.7751	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.96	1.7156	TRUE	267	562	48	632	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	61	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	115	3	0.35	0.95	0.6304	0.0103	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.95	0.6407	TRUE	519	3926	326	965	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	34	100	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	6	0	0.96	1	0.3514	1.0335	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	1.3849	TRUE	0	35	0	55	35	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	36	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.372	0.031	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.403	FALSE	462	80	0	856	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0125--IGH@	28	34	KIAA0125	1334	chr14:106384171:+	IGH@	136826	chr14:106054731:-	INCL_NON_REF_SPLICE	YES	30	136	0.67	0.31	0.2894	0.3514	KIAA0125->KIAA0125,chr14:106383838-106391825:+,IGH@->Oncogene{Bushman}	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.67	0.6408	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	32	13	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3307	0.1344	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4651	TRUE	477	1352	189	275	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	31	4	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.3204	0.0413	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.3617	TRUE	0	3	0	38	3	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0125--IGH@	13	76	KIAA0125	6521	chr14:106390816:+	IGH@	124903	chr14:106175003:-	INCL_NON_REF_SPLICE	NO	0	150	1	0.37	0.1344	0.7854	KIAA0125->KIAA0125,chr14:106383838-106391825:+,IGH@->Oncogene{Bushman}	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	1	0.9198	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	30	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.31	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.31	FALSE	499	1288	110	792	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBLN2--MT-CO1	28	0	FBLN2	10496	chr3:13655634:+	MT-CO1	26175	chrM:5916:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2894	0	FBLN2->chr3:13573824-13679922:+,fibulin_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2894	FALSE	0	0	0	7	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0125--IGH@	10	71	KIAA0125	1536	chr14:106384373:+	IGH@	124905	chr14:106175001:-	INCL_NON_REF_SPLICE	YES	2	149	0.98	0.35	0.1033	0.7338	KIAA0125->KIAA0125,chr14:106383838-106391825:+,IGH@->Oncogene{Bushman}	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.98	0.8371	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	8	76	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	309	7	0.21	0.92	0.0827	0.7854	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.92	0.8681	TRUE	267	562	48	632	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAFAH1B2--FOXR1	21	18	PAFAH1B2	2240	chr11:117023244:+	FOXR1	18967	chr11:118849492:+	ONLY_REF_SPLICE	YES	68	2	0.36	0.95	0.217	0.186	Mitelman{Neurbl=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.95	0.403	TRUE	0	0	0	2	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0125--IGH@	6	73	KIAA0125	1760	chr14:106384597:+	IGH@	124905	chr14:106175001:-	INCL_NON_REF_SPLICE	YES	0	149	1	0.35	0.062	0.7544	KIAA0125->KIAA0125,chr14:106383838-106391825:+,IGH@->Oncogene{Bushman}	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	1	0.8164	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRPV3--OR1A1	19	2	TRPV3	2441	chr17:3458026:-	OR1A1	31403	chr17:3119781:+	INCL_NON_REF_SPLICE	YES	59	0	0.26	1	0.1964	0.0207	TRPV3->chr17:3413796-3461289:-,transient_receptor_potential_cation_channel_subfamily_V_member_3,OR1A1->chr17:3118915-3119844:+,olfactory_receptor_family_1_subfamily_A_member_1	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.2171	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0125--IGH@	6	44	KIAA0125	1536	chr14:106384373:+	IGH@	136826	chr14:106054731:-	INCL_NON_REF_SPLICE	YES	2	136	0.96	0.27	0.062	0.4547	KIAA0125->KIAA0125,chr14:106383838-106391825:+,IGH@->Oncogene{Bushman}	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.96	0.5167	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0125--IGH@	5	46	KIAA0125	1760	chr14:106384597:+	IGH@	136826	chr14:106054731:-	INCL_NON_REF_SPLICE	YES	0	136	1	0.27	0.0517	0.4754	KIAA0125->KIAA0125,chr14:106383838-106391825:+,IGH@->Oncogene{Bushman}	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.5271	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	15	2	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.155	0.0207	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1757	TRUE	0	2	0	37	2	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	12	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.124	0.1137	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.2377	FALSE	499	1288	110	792	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	10	11	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	3	0	0.88	1	0.1033	0.1137	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.217	TRUE	0	5	0	45	5	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	12	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.124	0.031	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.155	FALSE	462	80	0	856	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0125--IGH@	4	34	KIAA0125	1443	chr14:106384280:+	IGH@	136826	chr14:106054731:-	INCL_NON_REF_SPLICE	YES	28	136	0.58	0.22	0.0413	0.3514	KIAA0125->KIAA0125,chr14:106383838-106391825:+,IGH@->Oncogene{Bushman}	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.58	0.3927	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAFAH1B2--FOXR1	9	10	PAFAH1B2	1152	chr11:117015134:+	FOXR1	18967	chr11:118849492:+	ONLY_REF_SPLICE	YES	37	2	0.34	0.9	0.093	0.1033	Mitelman{Neurbl=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.9	0.1963	TRUE	0	0	0	3	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AGO3--MAP7D1	10	2	AGO3	1728	chr1:36397046:+	MAP7D1	44647	chr1:36636572:+	ONLY_REF_SPLICE	YES	0	8	1	0.6	0.1033	0.0207	NEIGHBORS[83079],AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+,MAP7D1->MAP7_domain_containing_1,chr1:36621180-36646450:+	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.124	FALSE	0	0	0	1	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPAT--RPA3-AS1	10	2	NPAT	11179	chr11:108055959:-	RPA3-AS1	36053	chr7:7916912:+	ONLY_REF_SPLICE	YES	13	15	0.48	0.44	0.1033	0.0207	NPAT->chr11:108027942-108093369:-,nuclear_protein,_co-activator_of_histone_transcription,RPA3-AS1->chr7:7680342-8043689:+	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.48	0.124	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	7	13	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0723	0.1344	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2067	TRUE	160	277	29	98	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1033	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1033	FALSE	499	1288	110	792	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-ND5	8	3	IGH@	102295	chr14:106307272:-	MT-ND5	132519	chrM:13054:+	INCL_NON_REF_SPLICE	YES	10421	2089	0	0.01	0.0827	0.031	IGH@->Oncogene{Bushman},MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1137	FALSE	0	0	0	2	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	8	0	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0827	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0827	TRUE	0	1	0	26	1	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	14	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0413	0.1447	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.186	FALSE	499	1288	110	792	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	14	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0413	0.1447	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.186	FALSE	499	1288	110	792	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	14	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0413	0.1447	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.186	FALSE	499	1288	110	792	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	7	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0723	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0723	TRUE	0	0	0	100	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	5	8	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0517	0.0827	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1344	TRUE	274	363	69	150	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	14	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.031	0.1447	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1757	FALSE	499	1288	110	792	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	5	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0517	0.062	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1137	FALSE	515	4851	409	746	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	6	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.062	0.0103	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0723	FALSE	46	201	11	112	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBASH3B--BCL9L	6	1	UBASH3B	1536	chr11:122526918:+	BCL9L	32125	chr11:118780724:-	ONLY_REF_SPLICE	YES	40	5	0.15	0.58	0.062	0.0103	UBASH3B->chr11:122526383-122685181:+,ubiquitin_associated_and_SH3_domain_containing_B,BCL9L->B-cell_CLL/lymphoma_9-like,chr11:118764584-118796317:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.58	0.0723	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	6	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.062	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.062	TRUE	0	16	0	53	13	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AEBP2--RP11-405A12.2	6	0	AEBP2	15624	chr12:19873625:+	RP11-405A12.2	19888	chr12:20076132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.062	0	NEIGHBORS[54650],AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,RP11-405A12.2->chr12:19928385-20162871:+	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.062	FALSE	0	0	0	8	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0.0723	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1136	FALSE	499	1288	110	792	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--PBX1	4	7	RABGAP1L	13819	chr1:174247917:+	PBX1	99814	chr1:164853779:+	ONLY_REF_SPLICE	YES	69	0	0.14	1	0.0413	0.0723	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.1136	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAD1L1--RP11-406D1.2	5	1	MAD1L1	12207	chr7:2252847:-	RP11-406D1.2	45212	chr11:28003904:-	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.0517	0.0103	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,RP11-406D1.2->chr11:28000216-28041122:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.062	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	5	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0517	FALSE	0	24	0	62	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0.0413	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0826	FALSE	462	80	0	856	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	5	0	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0517	TRUE	13	49	2	38	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	3	5	AP003900.6	1122	chr21:11169841:+	AC011718.2	10100	chr22:20656924:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.031	0.0517	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.0827	TRUE	0	0	0	11	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	4	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.0413	0.0103	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.0516	FALSE	141	264	50	91	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	13	RP11-444D3.1	9606	chr12:24366277:-	SOX5	13900	chr12:24102595:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0103	0.1344	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1447	TRUE	8	10	1	12	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-ND5	3	4	IGH@	128098	chr14:106053929:-	MT-ND5	132529	chrM:13064:+	INCL_NON_REF_SPLICE	YES	991	2006	0.01	0	0.031	0.0413	IGH@->Oncogene{Bushman},MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0723	FALSE	4	1	0	1	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0413	FALSE	462	80	0	856	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0.031	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.062	FALSE	462	80	0	856	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0207	0.062	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.0827	FALSE	467	2173	244	435	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	1	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0.0103	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0413	FALSE	462	80	0	856	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	3	1	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	YES	72	50	0.05	0.07	0.031	0.0103	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.07	0.0413	TRUE	4	3	0	21	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAD1L1--RP11-406D1.2	3	0	MAD1L1	12207	chr7:2252847:-	RP11-406D1.2	46392	chr11:28000662:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,RP11-406D1.2->chr11:28000216-28041122:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	8	RP11-444D3.1	8531	chr12:24430150:-	SOX5	13900	chr12:24102595:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0103	0.0827	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.093	TRUE	0	1	0	1	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.9	1	0.0103	0.0827	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.093	FALSE	407	2205	196	549	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0103	0.0827	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.093	FALSE	192	492	57	212	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	2	0	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0207	TRUE	0	11	0	26	8	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	2	0	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0207	TRUE	0	1	0	24	1	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LDLRAP1--CAPZB	2	0	LDLRAP1	6006	chr1:25883758:+	CAPZB	20352	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	LDLRAP1->chr1:25870071-25895377:+,low_density_lipoprotein_receptor_adaptor_protein_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAU1--RP11-728G15.1	2	0	STAU1	1252	chr20:47804653:-	RP11-728G15.1	24419	chr12:121068299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1,RP11-728G15.1->chr12:121067908-121079394:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB1--BMI1	2	0	ZEB1	1798	chr10:31608221:+	BMI1	31789	chr10:22615360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0207	TRUE	0	0	0	4	0	TRUE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	1	2	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	3	1	0.5	0.75	0.0103	0.0207	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.75	0.031	TRUE	0	1	0	20	1	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS6--PCNT	1	1	GAS6	1499	chr13:114566548:-	PCNT	22441	chr21:47746291:+	ONLY_REF_SPLICE	YES	40	21	0.05	0.09	0.0103	0.0103	GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,PCNT->chr21:47744036-47865682:+,pericentrin	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.09	0.0206	TRUE	0	0	0	1	0	FALSE	ACH-000453
MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	NO	0	2	1	0.5	0.0103	0.0103	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	MOLP2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0206	FALSE	49	120	16	70	0	FALSE	ACH-000453
DMS114_LUNG	TIMM23B--LINC00843	134	85	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	1.678	1.0644	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DMS114_LUNG	1	1	2.7424	TRUE	508	994	45	981	0	FALSE	ACH-000530
DMS114_LUNG	TIMM23--RP11-464F9.1	74	9	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	626	5	0.12	0.94	0.9267	0.1127	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DMS114_LUNG	0.12	0.94	1.0394	TRUE	519	3926	326	965	0	FALSE	ACH-000530
DMS114_LUNG	ZFAND3--C6orf89	61	51	ZFAND3	2559	chr6:37897775:+	C6orf89	26510	chr6:36882060:+	ONLY_REF_SPLICE	YES	223	141	0.33	0.44	0.7639	0.6387	ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3,C6orf89->chr6:36839646-36896740:+,chromosome_6_open_reading_frame_89	DMS114_LUNG	0.33	0.44	1.4026	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	HYAL2--TMEM115	41	25	HYAL2	4951	chr3:50356387:-	TMEM115	11516	chr3:50392978:-	ONLY_REF_SPLICE	YES	397	153	0.14	0.3	0.5134	0.3131	LOCAL_REARRANGEMENT:-:[31843],HYAL2->Oncogene{Bushman},chr3:50355221-50360337:-,hyaluronoglucosaminidase_2,TMEM115->chr3:50392180-50397041:-,transmembrane_protein_115	DMS114_LUNG	0.14	0.3	0.8265	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	MT-ND6--MT-TE	42	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.526	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS114_LUNG	1	1	0.526	FALSE	499	1288	110	792	0	FALSE	ACH-000530
DMS114_LUNG	MT-ND6--MT-TE	32	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.4007	0.0125	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS114_LUNG	0.97	1	0.4132	FALSE	499	1288	110	792	0	FALSE	ACH-000530
DMS114_LUNG	RP11-680G10.1--GSE1	26	12	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	66	1	0.37	0.3256	0.1503	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DMS114_LUNG	0.37	1	0.4759	TRUE	458	1351	185	561	0	FALSE	ACH-000530
DMS114_LUNG	RP11-123O10.4--GRIP1	17	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2129	0.1002	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DMS114_LUNG	1	1	0.3131	FALSE	416	2512	207	587	0	FALSE	ACH-000530
DMS114_LUNG	HYAL2--TMEM115	9	28	HYAL2	5659	chr3:50355679:-	TMEM115	11516	chr3:50392978:-	INCL_NON_REF_SPLICE	YES	435	153	0.08	0.19	0.1127	0.3506	LOCAL_REARRANGEMENT:-:[31843],HYAL2->Oncogene{Bushman},chr3:50355221-50360337:-,hyaluronoglucosaminidase_2,TMEM115->chr3:50392180-50397041:-,transmembrane_protein_115	DMS114_LUNG	0.08	0.19	0.4633	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	NIPA2--POLA1	16	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2004	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	DMS114_LUNG	1	1	0.2004	TRUE	46	1352	75	139	0	FALSE	ACH-000530
DMS114_LUNG	RP4-565E6.1--HYDIN	13	12	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	10	1	0.71	0.1628	0.1503	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	DMS114_LUNG	0.71	1	0.3131	TRUE	456	1387	91	133	0	FALSE	ACH-000530
DMS114_LUNG	ZNF654--HMGB2	16	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2004	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	DMS114_LUNG	1	1	0.2004	TRUE	0	0	0	518	0	FALSE	ACH-000530
DMS114_LUNG	MT-CO3--MT-ATP6	14	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	8	0	0.67	1	0.1753	0.025	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS114_LUNG	0.67	1	0.2003	FALSE	189	492	56	216	0	FALSE	ACH-000530
DMS114_LUNG	ZFAND3--C6orf89	7	24	ZFAND3	1518	chr6:37787792:+	C6orf89	26510	chr6:36882060:+	ONLY_REF_SPLICE	YES	124	141	0.2	0.18	0.0877	0.3005	ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3,C6orf89->chr6:36839646-36896740:+,chromosome_6_open_reading_frame_89	DMS114_LUNG	0.18	0.2	0.3882	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	HS1BP3--C2orf43	11	6	HS1BP3	11314	chr2:20823656:-	C2orf43	28935	chr2:20901412:-	ONLY_REF_SPLICE	YES	219	57	0.07	0.23	0.1378	0.0751	LOCAL_REARRANGEMENT:-:[32939],HS1BP3->HCLS1_binding_protein_3,chr2:20760208-20850849:-,C2orf43->chr2:20883788-21022882:-	DMS114_LUNG	0.07	0.23	0.2129	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	C15orf57--CBX3	10	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	130	68	0.12	0.2	0.1252	0.0877	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DMS114_LUNG	0.12	0.2	0.2129	TRUE	267	562	48	632	0	FALSE	ACH-000530
DMS114_LUNG	BOK--FARP2	9	6	BOK	5565	chr2:242512000:+	FARP2	42431	chr2:242415272:+	INCL_NON_REF_SPLICE	YES	35	12	0.3	0.56	0.1127	0.0751	LOCAL_REARRANGEMENT:+:[63880],BOK->BCL2-related_ovarian_killer,Oncogene{Bushman},chr2:242498136-242513546:+,FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+	DMS114_LUNG	0.3	0.56	0.1878	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	FAM13B--SIL1	8	10	FAM13B	4417	chr5:137368471:-	SIL1	45441	chr5:138463542:-	ONLY_REF_SPLICE	YES	121	39	0.13	0.32	0.1002	0.1252	FAM13B->chr5:137273649-137387650:-,family_with_sequence_similarity_13_member_B,SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-	DMS114_LUNG	0.13	0.32	0.2254	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	RP11-23E10.2--DUSP22	7	11	RP11-23E10.2	3350	chr16:33350937:-	DUSP22	8455	chr6:304628:+	INCL_NON_REF_SPLICE	YES	0	51	1	0.26	0.0877	0.1378	GTEx_FI:{Testis=[count:25=pct:23.8]},RP11-23E10.2->chr16:33350764-33356875:-,DUSP22->chr6:291630-351355:+,dual_specificity_phosphatase_22	DMS114_LUNG	0.26	1	0.2255	TRUE	21	2	0	1	0	FALSE	ACH-000530
DMS114_LUNG	MT-ND6--MT-TE	9	2	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.1127	0.025	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS114_LUNG	0.92	1	0.1377	FALSE	499	1288	110	792	0	FALSE	ACH-000530
DMS114_LUNG	RP11-680G10.1--GSE1	8	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	113	1	0.11	0.1002	0.0751	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DMS114_LUNG	0.11	1	0.1753	TRUE	465	1949	224	605	0	FALSE	ACH-000530
DMS114_LUNG	MT-ND4--MT-ND4L	6	12	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	5180	0	0	1	0.0751	0.1503	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS114_LUNG	0	1	0.2254	FALSE	344	827	44	306	0	FALSE	ACH-000530
DMS114_LUNG	BMPR2--AC010105.1	8	2	BMPR2	1615	chr2:203242273:+	AC010105.1	30029	chr2:82749152:-	ONLY_REF_SPLICE	YES	83	0	0.11	1	0.1002	0.025	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,AC010105.1->chr2:82706252-82765835:-	DMS114_LUNG	0.11	1	0.1252	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	ADAM9--PLEKHA2	7	5	ADAM9	14387	chr8:38899636:+	PLEKHA2	33837	chr8:38793512:+	ONLY_REF_SPLICE	YES	1111	70	0.01	0.15	0.0877	0.0626	LOCAL_REARRANGEMENT:+:[22960],ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,PLEKHA2->Oncogene{Bushman},chr8:38758753-38831428:+,pleckstrin_homology_domain_containing_A2	DMS114_LUNG	0.01	0.15	0.1503	TRUE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	ARHGAP4--HCFC1	6	7	ARHGAP4	13359	chrX:153178154:-	HCFC1	34877	chrX:153218409:-	ONLY_REF_SPLICE	YES	137	259	0.09	0.05	0.0751	0.0877	LOCAL_REARRANGEMENT:-:[12552],ARHGAP4->Oncogene{Bushman},Rho_GTPase_activating_protein_4,chrX:153172821-153200452:-,HCFC1->chrX:153213004-153237258:-,host_cell_factor_C1	DMS114_LUNG	0.05	0.09	0.1628	TRUE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	GABPB1--C15orf52	7	3	GABPB1	9733	chr15:50592986:-	C15orf52	19882	chr15:40632216:-	ONLY_REF_SPLICE	YES	133	3	0.07	0.77	0.0877	0.0376	GABPB1->GA_binding_protein_transcription_factor_beta_subunit_1,Oncogene{Bushman},chr15:50569389-50647605:-,C15orf52->chr15:40623653-40633168:-,chromosome_15_open_reading_frame_52	DMS114_LUNG	0.07	0.77	0.1253	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	AC011288.2--SCIN	6	6	AC011288.2	3123	chr7:13257293:+	SCIN	20090	chr7:12662426:+	ONLY_REF_SPLICE	YES	0	3	1	0.8	0.0751	0.0751	AC011288.2->chr7:13141016-13743774:+,SCIN->chr7:12610203-12693228:+,scinderin	DMS114_LUNG	0.8	1	0.1502	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	CCDC43--MAPT	4	13	CCDC43	1230	chr17:42766918:-	MAPT	35039	chr17:44091609:+	ONLY_REF_SPLICE	YES	186	49	0.08	0.26	0.0501	0.1628	CCDC43->chr17:42750437-42767147:-,coiled-coil_domain_containing_43,MAPT->chr17:43971748-44105700:+,microtubule_associated_protein_tau	DMS114_LUNG	0.08	0.26	0.2129	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	MT-ND4--MT-ND4L	6	5	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	620	0	0.02	1	0.0751	0.0626	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS114_LUNG	0.02	1	0.1377	FALSE	344	827	44	306	0	FALSE	ACH-000530
DMS114_LUNG	HMGA2--TBK1	5	8	HMGA2	5315	chr12:66232349:+	TBK1	32293	chr12:64860681:+	ONLY_REF_SPLICE	YES	135	92	0.09	0.12	0.0626	0.1002	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+	DMS114_LUNG	0.09	0.12	0.1628	TRUE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	MT-ND4--MT-ND4L	7	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0877	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS114_LUNG	1	1	0.0877	FALSE	344	821	44	306	0	FALSE	ACH-000530
DMS114_LUNG	MT-ND4--MT-ND4L	3	16	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	15	0	0.56	1	0.0376	0.2004	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS114_LUNG	0.56	1	0.238	FALSE	344	826	44	306	0	FALSE	ACH-000530
DMS114_LUNG	MT-ND6--MT-TE	7	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0877	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS114_LUNG	1	1	0.0877	FALSE	499	1288	110	792	0	FALSE	ACH-000530
DMS114_LUNG	MT-CO3--MT-ATP6	6	2	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.89	0.0751	0.025	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS114_LUNG	0.89	1	0.1001	FALSE	189	492	56	216	0	FALSE	ACH-000530
DMS114_LUNG	MT-ND4--MT-ND4L	3	14	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	6	0	0.74	1	0.0376	0.1753	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS114_LUNG	0.74	1	0.2129	FALSE	344	826	44	306	0	FALSE	ACH-000530
DMS114_LUNG	MT-ND4--MT-ND4L	5	2	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0626	0.025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS114_LUNG	0.78	1	0.0876	FALSE	344	821	44	306	0	FALSE	ACH-000530
DMS114_LUNG	RPLP0--PLA2G1B	4	6	RPLP0	1506	chr12:120638533:-	PLA2G1B	9694	chr12:120763823:-	ONLY_REF_SPLICE	YES	3214	0	0	1	0.0501	0.0751	RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0,PLA2G1B->chr12:120759914-120765592:-,phospholipase_A2_group_IB	DMS114_LUNG	0	1	0.1252	TRUE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	TMCC2--FBXO3	5	2	TMCC2	4534	chr1:205211172:+	FBXO3	37263	chr11:33763630:-	ONLY_REF_SPLICE	YES	8	42	0.47	0.14	0.0626	0.025	TMCC2->chr1:205197304-205242471:+,transmembrane_and_coiled-coil_domain_family_2,FBXO3->F-box_protein_3,chr11:33762485-33796089:-	DMS114_LUNG	0.14	0.47	0.0876	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	HMGA2--TBK1	4	5	HMGA2	5315	chr12:66232349:+	TBK1	33475	chr12:64868010:+	ONLY_REF_SPLICE	YES	135	149	0.06	0.06	0.0501	0.0626	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+	DMS114_LUNG	0.06	0.06	0.1127	TRUE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	MT-ND4--MT-ND4L	3	9	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	0	0.71	1	0.0376	0.1127	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS114_LUNG	0.71	1	0.1503	FALSE	344	821	44	306	0	FALSE	ACH-000530
DMS114_LUNG	MT-ND4--MT-ND4L	5	1	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	63	0	0.09	1	0.0626	0.0125	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS114_LUNG	0.09	1	0.0751	FALSE	344	827	44	306	0	FALSE	ACH-000530
DMS114_LUNG	SLC6A15--TSPAN19	4	5	SLC6A15	2093	chr12:85306302:-	TSPAN19	29965	chr12:85417178:-	ONLY_REF_SPLICE	YES	253	0	0.03	1	0.0501	0.0626	SLC6A15->chr12:85253492-85307394:-,solute_carrier_family_6_member_15,TSPAN19->chr12:85408094-85430055:-,tetraspanin_19	DMS114_LUNG	0.03	1	0.1127	TRUE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	LCP1--FAR1	4	4	LCP1	24608	chr13:46700482:-	FAR1	45544	chr11:13753280:+	INCL_NON_REF_SPLICE	YES	0	30	1	0.21	0.0501	0.0501	LCP1->Oncogene{Bushman},chr13:46700055-46786006:-,lymphocyte_cytosolic_protein_1,FAR1->chr11:13690217-13753893:+,fatty_acyl-CoA_reductase_1	DMS114_LUNG	0.21	1	0.1002	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	BMPR2--AC010105.1	4	2	BMPR2	1615	chr2:203242273:+	AC010105.1	31098	chr2:82706432:-	ONLY_REF_SPLICE	YES	83	0	0.07	1	0.0501	0.025	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,AC010105.1->chr2:82706252-82765835:-	DMS114_LUNG	0.07	1	0.0751	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	FAR1--LCP1	3	6	FAR1	18493	chr11:13753264:+	LCP1	45495	chr13:46700717:-	INCL_NON_REF_SPLICE	YES	34	1	0.21	0.9	0.0376	0.0751	FAR1->chr11:13690217-13753893:+,fatty_acyl-CoA_reductase_1,LCP1->Oncogene{Bushman},chr13:46700055-46786006:-,lymphocyte_cytosolic_protein_1	DMS114_LUNG	0.21	0.9	0.1127	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	MT-ND4--MT-ND4L	3	6	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.0376	0.0751	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS114_LUNG	0.64	1	0.1127	FALSE	344	821	44	306	0	FALSE	ACH-000530
DMS114_LUNG	MT-ND4--MT-ND4L	4	2	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	28	0	0.18	1	0.0501	0.025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS114_LUNG	0.18	1	0.0751	FALSE	344	826	44	306	0	FALSE	ACH-000530
DMS114_LUNG	MT-CO3--MT-ATP6	3	5	MT-CO3	1138	chrM:9344:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	7	7	0.53	0.53	0.0376	0.0626	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS114_LUNG	0.53	0.53	0.1002	FALSE	189	492	56	216	0	FALSE	ACH-000530
DMS114_LUNG	MT-CO3--MT-ATP6	4	1	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0.0125	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS114_LUNG	1	1	0.0626	FALSE	189	492	56	216	0	FALSE	ACH-000530
DMS114_LUNG	RP11-120D5.1--MID1	3	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	258	0.53	0.03	0.0376	0.0626	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	DMS114_LUNG	0.03	0.53	0.1002	FALSE	16	356	14	466	0	FALSE	ACH-000530
DMS114_LUNG	ATP9A--ZFP64	4	0	ATP9A	1333	chr20:50384841:-	ZFP64	52878	chr20:50715126:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0501	0	GTEx&tcga_normals:1/3694=0.03%,ATP9A->ATPase_phospholipid_transporting_9A_(putative),chr20:50213053-50385173:-,ZFP64->Oncogene{Bushman},ZFP64_zinc_finger_protein,chr20:50668202-50820847:-	DMS114_LUNG	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS114_LUNG	1	1	0.0501	FALSE	344	821	44	306	0	FALSE	ACH-000530
DMS114_LUNG	RP4-565E6.1--HYDIN	3	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	23	1	0.23	0.0376	0.0501	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	DMS114_LUNG	0.23	1	0.0877	TRUE	84	87	4	41	0	FALSE	ACH-000530
DMS114_LUNG	SFMBT2--ITIH5	3	4	SFMBT2	6240	chr10:7409611:-	ITIH5	50069	chr10:7628032:-	ONLY_REF_SPLICE	YES	1	1	0.88	0.88	0.0376	0.0501	SFMBT2->Oncogene{Bushman},Scm-like_with_four_mbt_domains_2,chr10:7200586-7453450:-,ITIH5->chr10:7601232-7708961:-,inter-alpha-trypsin_inhibitor_heavy_chain_family_member_5	DMS114_LUNG	0.88	0.88	0.0877	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	LPHN2--RP5-887A10.1	3	3	LPHN2	1350	chr1:81772194:+	RP5-887A10.1	45635	chr1:81109910:+	ONLY_REF_SPLICE	YES	81	0	0.07	1	0.0376	0.0376	LPHN2->Oncogene{Bushman},chr1:81771845-82458120:+,RP5-887A10.1->chr1:81001440-81112473:+	DMS114_LUNG	0.07	1	0.0752	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	MT-CO3--MT-ATP6	3	3	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	9	0	0.4	1	0.0376	0.0376	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS114_LUNG	0.4	1	0.0752	FALSE	189	492	56	216	0	FALSE	ACH-000530
DMS114_LUNG	ZNF420--HKR1	2	7	ZNF420	5639	chr19:37582023:+	HKR1	27721	chr19:37838092:+	ONLY_REF_SPLICE	YES	49	76	0.16	0.11	0.025	0.0877	HGNC_GENEFAM,PROTCLUST,ZNF420->chr19:37498759-37621216:+,zinc_finger_protein_420,HKR1->HKR1,_GLI-Kruppel_zinc_finger_family_member,Oncogene{Bushman},chr19:37803739-37860267:+	DMS114_LUNG	0.11	0.16	0.1127	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	AP000525.9--LA16c-60G3.6	3	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	14	0	0.26	1	0.0376	0.025	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	DMS114_LUNG	0.26	1	0.0626	TRUE	0	42	0	133	42	FALSE	ACH-000530
DMS114_LUNG	MT-CO3--MT-ATP6	3	2	MT-CO3	1051	chrM:9257:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0.025	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS114_LUNG	1	1	0.0626	FALSE	189	492	56	216	0	FALSE	ACH-000530
DMS114_LUNG	MT-ND4--MT-ND4L	3	1	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	23	0	0.15	1	0.0376	0.0125	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS114_LUNG	0.15	1	0.0501	FALSE	344	826	44	306	0	FALSE	ACH-000530
DMS114_LUNG	MT-ND6--MT-TE	3	1	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0.0125	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS114_LUNG	1	1	0.0501	FALSE	499	1288	110	792	0	FALSE	ACH-000530
DMS114_LUNG	MT-ND6--MT-TE	3	1	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0376	0.0125	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS114_LUNG	0.8	1	0.0501	FALSE	499	1288	110	792	0	FALSE	ACH-000530
DMS114_LUNG	CTD-2337A12.1--CAST	3	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0376	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	DMS114_LUNG	1	1	0.0376	TRUE	347	1186	183	220	0	FALSE	ACH-000530
DMS114_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DMS114_LUNG	1	1	0.0376	FALSE	189	492	56	216	0	FALSE	ACH-000530
DMS114_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS114_LUNG	1	1	0.0376	FALSE	499	1288	110	792	0	FALSE	ACH-000530
DMS114_LUNG	RP5-940J5.3--CHD4	3	0	RP5-940J5.3	1035	chr12:6642630:-	CHD4	28069	chr12:6680198:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0376	0	LOCAL_REARRANGEMENT:-:[36585],RP5-940J5.3->chr12:6641456-6642664:-,CHD4->ArcherDX_panel,FoundationOne_panel,chr12:6679249-6716642:-,chromodomain_helicase_DNA_binding_protein_4	DMS114_LUNG	1	1	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	SLC6A15--TSPAN19	1	8	SLC6A15	2093	chr12:85306302:-	TSPAN19	26464	chr12:85423751:-	ONLY_REF_SPLICE	YES	253	2	0.03	0.82	0.0125	0.1002	SLC6A15->chr12:85253492-85307394:-,solute_carrier_family_6_member_15,TSPAN19->chr12:85408094-85430055:-,tetraspanin_19	DMS114_LUNG	0.03	0.82	0.1127	TRUE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	EXT1--SAMD12	2	3	EXT1	2769	chr8:119122324:-	SAMD12	24520	chr8:119593132:-	ONLY_REF_SPLICE	YES	51	0	0.09	1	0.025	0.0376	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:-:[77606],EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	DMS114_LUNG	0.09	1	0.0626	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	LINC01014--KCNMB2	2	3	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.025	0.0376	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	DMS114_LUNG	0.71	1	0.0626	FALSE	11	60	26	37	0	FALSE	ACH-000530
DMS114_LUNG	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.83	0.83	0.025	0.0376	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DMS114_LUNG	0.83	0.83	0.0626	FALSE	515	4851	409	746	0	FALSE	ACH-000530
DMS114_LUNG	SLC6A15--TSPAN19	1	7	SLC6A15	2093	chr12:85306302:-	TSPAN19	26646	chr12:85423569:-	ONLY_REF_SPLICE	YES	253	4	0.03	0.67	0.0125	0.0877	SLC6A15->chr12:85253492-85307394:-,solute_carrier_family_6_member_15,TSPAN19->chr12:85408094-85430055:-,tetraspanin_19	DMS114_LUNG	0.03	0.67	0.1002	TRUE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	PTPRK--ARHGAP18	2	2	PTPRK	1467	chr6:128841404:-	ARHGAP18	54410	chr6:129963163:-	ONLY_REF_SPLICE	YES	402	11	0.01	0.27	0.025	0.025	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,ARHGAP18->Rho_GTPase_activating_protein_18,chr6:129897277-130031370:-	DMS114_LUNG	0.01	0.27	0.05	FALSE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	ATP6V1H--TCEA1	2	1	ATP6V1H	11082	chr8:54723724:-	TCEA1	36959	chr8:54883023:-	ONLY_REF_SPLICE	NO	299	1533	0.01	0	0.025	0.0125	GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_EBV-transformed_lymphocytes=1,Whole_Blood=1},ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-,TCEA1->Oncogene{Bushman},chr8:54879112-54935089:-,transcription_elongation_factor_A1	DMS114_LUNG	0	0.01	0.0375	FALSE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	BCAS3--NFATC2	2	1	BCAS3	11036	chr17:58885437:+	NFATC2	65353	chr20:50092197:-	ONLY_REF_SPLICE	YES	44	6	0.06	0.33	0.025	0.0125	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,NFATC2->Oncogene{Bushman},chr20:50003494-50179370:-,nuclear_factor_of_activated_T-cells_2	DMS114_LUNG	0.06	0.33	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	PROSC--DDHD2	2	1	PROSC	2996	chr8:37623873:+	DDHD2	23077	chr8:38103751:+	ONLY_REF_SPLICE	YES	828	542	0	0.01	0.025	0.0125	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),DDHD2->DDHD_domain_containing_2,chr8:38082736-38133076:+	DMS114_LUNG	0	0.01	0.0375	FALSE	0	1	0	1	0	FALSE	ACH-000530
DMS114_LUNG	RP11-120D5.1--MID1	1	5	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	258	0.86	0.02	0.0125	0.0626	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	DMS114_LUNG	0.02	0.86	0.0751	FALSE	2	31	0	60	0	FALSE	ACH-000530
DMS114_LUNG	RP11-123O10.4--GRIP1	1	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0125	0.0626	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DMS114_LUNG	1	1	0.0751	FALSE	93	270	15	244	0	FALSE	ACH-000530
DMS114_LUNG	SLC6A15--TSPAN19	1	5	SLC6A15	2093	chr12:85306302:-	TSPAN19	28844	chr12:85418550:-	ONLY_REF_SPLICE	NO	253	0	0.02	1	0.0125	0.0626	SLC6A15->chr12:85253492-85307394:-,solute_carrier_family_6_member_15,TSPAN19->chr12:85408094-85430055:-,tetraspanin_19	DMS114_LUNG	0.02	1	0.0751	TRUE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	ZNF217--BCAS1	2	1	ZNF217	3627	chr20:52214170:-	BCAS1	31307	chr20:52570234:-	ONLY_REF_SPLICE	YES	94	6	0.03	0.33	0.025	0.0125	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	DMS114_LUNG	0.03	0.33	0.0375	TRUE	0	0	0	2	0	FALSE	ACH-000530
DMS114_LUNG	AP000487.5--LUC7L2	2	0	AP000487.5	1391	chr11:70244204:-	LUC7L2	19986	chr7:139102284:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	AP000487.5->chr11:70218352-70244594:-,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	ASH1L--CSDE1	2	0	ASH1L	31462	chr1:155311727:-	CSDE1	47578	chr1:115282346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	BTBD10--PSMA1	2	0	BTBD10	1206	chr11:13484639:-	PSMA1	21924	chr11:14540587:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	BTBD10->BTB_domain_containing_10,chr11:13409548-13484844:-,PSMA1->chr11:14515329-14541890:-,chr11:14515329-14665181:-,proteasome_subunit_alpha_1	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	CDCA4--EIF3B	2	0	CDCA4	1150	chr14:105487336:-	EIF3B	20553	chr7:2415024:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	CDCA4->cell_division_cycle_associated_4,chr14:105475910-105487485:-,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	CIZ1--CSDE1	2	0	CIZ1	13699	chr9:130931331:-	CSDE1	27651	chr1:115282346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	CIZ1->CDKN1A_interacting_zinc_finger_protein_1,chr9:130928343-130966662:-,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	CNKSR2--TMEM67	2	0	CNKSR2	9361	chrX:21519706:+	TMEM67	32014	chr8:94767248:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	CNKSR2->chrX:21392536-21672813:+,connector_enhancer_of_kinase_suppressor_of_Ras_2,TMEM67->chr8:94767072-94831462:+,transmembrane_protein_67	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	DCDC1--PRR5L	1	4	DCDC1	16050	chr11:31149016:-	PRR5L	89834	chr11:36483892:+	ONLY_REF_SPLICE	YES	87	1	0.05	0.83	0.0125	0.0501	DCDC1->chr11:30851916-31391357:-,doublecortin_domain_containing_1,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	DMS114_LUNG	0.05	0.83	0.0626	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	EIF4G2--WDR6	2	0	EIF4G2	1406	chr11:10830252:-	WDR6	19239	chr3:49049068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2,WDR6->WD_repeat_domain_6,chr3:49044495-49053386:+	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	FAM172A--KIAA0825	2	0	FAM172A	4518	chr5:93386436:-	KIAA0825	50323	chr5:93489829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_REARRANGEMENT:-:[41267],FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,KIAA0825->KIAA0825,chr5:93488671-93954309:-	DMS114_LUNG	1	1	0.025	TRUE	0	1	0	2	1	TRUE	ACH-000530
DMS114_LUNG	METTL16--USE1	2	0	METTL16	2261	chr17:2405498:-	USE1	29538	chr19:17330022:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	METTL16->chr17:2308856-2415185:-,methyltransferase_like_16,USE1->chr19:17326155-17330638:+,unconventional_SNARE_in_the_ER_1	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	NCAPD2--ZNF384	2	0	NCAPD2	2870	chr12:6604391:+	ZNF384	32433	chr12:6778355:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	NCAPD2->Oncogene{Bushman},chr12:6602522-6641121:+,non-SMC_condensin_I_complex_subunit_D2,ZNF384->Oncogene{Bushman},chr12:6775643-6798738:-,zinc_finger_protein_384	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	POP1--RP11-96B2.1	2	0	POP1	1094	chr8:99129618:+	RP11-96B2.1	23231	chr8:123499705:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	POP1->POP1_homolog,_ribonuclease_P/MRP_subunit,chr8:99129525-99172062:+,RP11-96B2.1->chr8:123497754-123502054:-	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	RP11-120D5.1--MID1	1	4	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	9	258	0.36	0.02	0.0125	0.0501	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	DMS114_LUNG	0.02	0.36	0.0626	FALSE	0	48	1	163	0	FALSE	ACH-000530
DMS114_LUNG	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0125	0.0501	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DMS114_LUNG	0.83	1	0.0626	FALSE	275	511	55	178	0	FALSE	ACH-000530
DMS114_LUNG	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.83	1	0.0125	0.0501	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	DMS114_LUNG	0.83	1	0.0626	FALSE	407	2205	196	549	0	FALSE	ACH-000530
DMS114_LUNG	SAE1--AC073046.25	2	0	SAE1	11514	chr19:47673180:+	AC073046.25	21207	chr2:74213107:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,AC073046.25->chr2:74212259-74213470:+	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	DMS114_LUNG	1	1	0.025	TRUE	53	396	64	110	0	FALSE	ACH-000530
DMS114_LUNG	SCAF11--SLC38A1	2	0	SCAF11	2468	chr12:46384136:-	SLC38A1	39337	chr12:46623422:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-,SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	SLC6A15--TSPAN19	1	4	SLC6A15	2093	chr12:85306302:-	TSPAN19	35195	chr12:85408334:-	ONLY_REF_SPLICE	YES	253	3	0.02	0.62	0.0125	0.0501	SLC6A15->chr12:85253492-85307394:-,solute_carrier_family_6_member_15,TSPAN19->chr12:85408094-85430055:-,tetraspanin_19	DMS114_LUNG	0.02	0.62	0.0626	TRUE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	SLC6A15--TSPAN19	1	4	SLC6A15	2093	chr12:85306302:-	TSPAN19	31040	chr12:85413515:-	ONLY_REF_SPLICE	YES	253	4	0.02	0.56	0.0125	0.0501	SLC6A15->chr12:85253492-85307394:-,solute_carrier_family_6_member_15,TSPAN19->chr12:85408094-85430055:-,tetraspanin_19	DMS114_LUNG	0.02	0.56	0.0626	TRUE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	TMEM8A--SRRM2	2	0	TMEM8A	3640	chr16:431701:-	SRRM2	17895	chr16:2807473:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	TMEM8A->chr16:420773-437113:-,transmembrane_protein_8A,SRRM2->chr16:2802330-2822539:+,serine/arginine_repetitive_matrix_2	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	TUB--HNRNPH1	2	0	TUB	12982	chr11:8122544:+	HNRNPH1	30550	chr5:179044111:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	TUB->chr11:8040791-8127659:+,tubby_bipartite_transcription_factor,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	VPS41--MAN1A2	2	0	VPS41	6507	chr7:38902145:-	MAN1A2	47795	chr1:117963191:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	VPS41->VPS41,_HOPS_complex_subunit,chr7:38762563-38971994:-,MAN1A2->chr1:117910071-118071494:+,mannosidase_alpha_class_1A_member_2	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	ZNF217--BCAS1	2	0	ZNF217	4711	chr20:52210295:-	BCAS1	35027	chr20:52558063:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	DMS114_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	DCDC1--PRR5L	1	3	DCDC1	14853	chr11:31159239:-	PRR5L	89834	chr11:36483892:+	ONLY_REF_SPLICE	NO	95	1	0.04	0.8	0.0125	0.0376	DCDC1->chr11:30851916-31391357:-,doublecortin_domain_containing_1,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	DMS114_LUNG	0.04	0.8	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	LINC01014--KCNMB2	1	3	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	NO	2	0	0.67	1	0.0125	0.0376	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	DMS114_LUNG	0.67	1	0.0501	FALSE	12	33	18	33	0	FALSE	ACH-000530
DMS114_LUNG	NUDT7--RP11-538I12.3	1	3	NUDT7	2258	chr16:77759481:+	RP11-538I12.3	10637	chr16:77323173:+	ONLY_REF_SPLICE	YES	93	0	0.04	1	0.0125	0.0376	NUDT7->chr16:77756411-77776157:+,nudix_hydrolase_7,RP11-538I12.3->chr16:77268774-77324831:+	DMS114_LUNG	0.04	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	EIF3H--TRPS1	1	2	EIF3H	3765	chr8:117767905:-	TRPS1	38406	chr8:116430680:-	ONLY_REF_SPLICE	YES	2485	53	0	0.05	0.0125	0.025	EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1	DMS114_LUNG	0	0.05	0.0375	FALSE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	EIF3H--TRPS1	1	2	EIF3H	7051	chr8:117738255:-	TRPS1	38406	chr8:116430680:-	ONLY_REF_SPLICE	YES	3975	53	0	0.05	0.0125	0.025	EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1	DMS114_LUNG	0	0.05	0.0375	FALSE	0	1	0	1	1	FALSE	ACH-000530
DMS114_LUNG	ERC1--FSTL3	1	2	ERC1	25153	chr12:1372331:+	FSTL3	48977	chr19:681650:+	ONLY_REF_SPLICE	YES	88	54	0.03	0.05	0.0125	0.025	ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,FSTL3->Oncogene{Bushman},chr19:676392-683385:+,follistatin_like_3	DMS114_LUNG	0.03	0.05	0.0375	TRUE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	GPC5--GPC5-IT1	1	2	GPC5	10063	chr13:92797242:+	GPC5-IT1	16096	chr13:93161766:+	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0125	0.025	NEIGHBORS_OVERLAP:+:+:[25488],GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5,GPC5-IT1->GPC5_intronic_transcript_1,chr13:93136859-93162347:+	DMS114_LUNG	0.25	1	0.0375	FALSE	21	23	3	6	0	FALSE	ACH-000530
DMS114_LUNG	GPR124--CTA-392C11.1	1	2	GPR124	3841	chr8:37672485:+	CTA-392C11.1	23533	chr8:40191472:-	ONLY_REF_SPLICE	YES	45	0	0.06	1	0.0125	0.025	GPR124->ArcherDX_panel,FoundationOne_panel,chr8:37641709-37702414:+,CTA-392C11.1->chr8:40156260-40200921:-	DMS114_LUNG	0.06	1	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	LINC01014--RP11-91K9.1	1	2	LINC01014	1175	chr3:178137163:+	RP11-91K9.1	8052	chr3:177613401:+	ONLY_REF_SPLICE	NO	2	0	0.6	1	0.0125	0.025	LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,RP11-91K9.1->chr3:177534653-177617012:+	DMS114_LUNG	0.6	1	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000530
DMS114_LUNG	RSU1--TRDMT1	1	2	RSU1	6309	chr10:16794538:-	TRDMT1	17991	chr10:17216659:-	ONLY_REF_SPLICE	YES	770	8	0	0.27	0.0125	0.025	RSU1->Ras_suppressor_protein_1,chr10:16632610-16859527:-,TRDMT1->chr10:17184253-17244053:-,tRNA_aspartic_acid_methyltransferase_1	DMS114_LUNG	0	0.27	0.0375	FALSE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	ATP9A--ZFP64	1	1	ATP9A	4803	chr20:50342358:-	ZFP64	44258	chr20:50782564:-	ONLY_REF_SPLICE	NO	321	166	0.01	0.01	0.0125	0.0125	GTEx&tcga_normals:1/3694=0.03%,ATP9A->ATPase_phospholipid_transporting_9A_(putative),chr20:50213053-50385173:-,ZFP64->Oncogene{Bushman},ZFP64_zinc_finger_protein,chr20:50668202-50820847:-	DMS114_LUNG	0.01	0.01	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	CHFR--SRSF4	1	1	CHFR	2239	chr12:133522207:-	SRSF4	43480	chr1:29475738:-	ONLY_REF_SPLICE	YES	1	451	0.67	0	0.0125	0.0125	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,SRSF4->chr1:29474255-29508499:-,serine/arginine-rich_splicing_factor_4	DMS114_LUNG	0	0.67	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	65	53	0.03	0.04	0.0125	0.0125	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	DMS114_LUNG	0.03	0.04	0.025	FALSE	118	557	29	88	0	FALSE	ACH-000530
DMS114_LUNG	CTC-786C10.1--GSE1	1	1	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	113	1	0.02	0.0125	0.0125	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DMS114_LUNG	0.02	1	0.025	TRUE	2	3	0	21	0	FALSE	ACH-000530
DMS114_LUNG	DCDC1--IMMP1L	1	1	DCDC1	11505	chr11:31262997:-	IMMP1L	76285	chr11:31455117:-	ONLY_REF_SPLICE	YES	53	162	0.04	0.01	0.0125	0.0125	LOCAL_REARRANGEMENT:-:[62591],DCDC1->chr11:30851916-31391357:-,doublecortin_domain_containing_1,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	DMS114_LUNG	0.01	0.04	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	HDGFRP2--PLIN4	1	1	HDGFRP2	2828	chr19:4475580:+	PLIN4	18541	chr19:4516690:-	ONLY_REF_SPLICE	YES	353	0	0.01	1	0.0125	0.0125	NEIGHBORS_OVERLAP:+:-:[19],HDGFRP2->chr19:4472284-4502223:+,PLIN4->chr19:4502204-4517716:-,perilipin_4	DMS114_LUNG	0.01	1	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	LARS--RARS	1	1	LARS	1173	chr5:145562051:-	RARS	37779	chr5:167915607:+	ONLY_REF_SPLICE	NO	272	10	0.01	0.17	0.0125	0.0125	HGNC_GENEFAM,LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase,RARS->arginyl-tRNA_synthetase,chr5:167913450-167946304:+	DMS114_LUNG	0.01	0.17	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	PRPF3--VPS45	1	1	PRPF3	17707	chr1:150321694:+	VPS45	38683	chr1:150116887:+	ONLY_REF_SPLICE	YES	230	191	0.01	0.01	0.0125	0.0125	PRPF3->chr1:150293925-150325671:+,pre-mRNA_processing_factor_3,VPS45->chr1:150039369-150117505:+,vacuolar_protein_sorting_45_homolog	DMS114_LUNG	0.01	0.01	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	PTPRK--ARHGAP18	1	1	PTPRK	1467	chr6:128841404:-	ARHGAP18	56849	chr6:129955250:-	ONLY_REF_SPLICE	YES	402	15	0	0.12	0.0125	0.0125	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,ARHGAP18->Rho_GTPase_activating_protein_18,chr6:129897277-130031370:-	DMS114_LUNG	0	0.12	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	RAPGEF2--PDGFC	1	1	RAPGEF2	8787	chr4:160162520:+	PDGFC	50149	chr4:157771568:-	ONLY_REF_SPLICE	YES	484	741	0	0	0.0125	0.0125	RAPGEF2->Rap_guanine_nucleotide_exchange_factor_2,chr4:160025330-160281321:+,PDGFC->chr4:157681606-157892546:-,platelet_derived_growth_factor_C	DMS114_LUNG	0	0	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	RERE--ENO1	1	1	RERE	5242	chr1:8763114:-	ENO1	42962	chr1:8934976:-	ONLY_REF_SPLICE	NO	157	1500	0.01	0	0.0125	0.0125	LOCAL_REARRANGEMENT:-:[43359],RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	DMS114_LUNG	0	0.01	0.025	FALSE	0	2	0	1	2	FALSE	ACH-000530
DMS114_LUNG	RP11-634B7.4--TRIM58	1	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	5	1	0.29	0.0125	0.0125	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	DMS114_LUNG	0.29	1	0.025	TRUE	158	633	76	73	0	FALSE	ACH-000530
DMS114_LUNG	SEMA3D--DNM3OS	1	1	SEMA3D	22084	chr7:84636118:-	DNM3OS	30755	chr1:172113577:-	ONLY_REF_SPLICE	YES	357	57	0.01	0.03	0.0125	0.0125	SEMA3D->chr7:84624869-84816171:-,semaphorin_3D,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	DMS114_LUNG	0.01	0.03	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000530
DMS114_LUNG	SF1--GNAS	1	1	SF1	3289	chr11:64543970:-	GNAS	32063	chr20:57470667:+	ONLY_REF_SPLICE	YES	635	1501	0	0	0.0125	0.0125	GTEx_FI:{Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=3,Pituitary=3,Minor_Salivary_Gland=1,Brain_-_Hypothalamus=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	DMS114_LUNG	0	0	0.025	FALSE	4	13	1	15	0	FALSE	ACH-000530
DMS114_LUNG	ZNF217--BCAS1	1	1	ZNF217	11090	chr20:52192266:-	BCAS1	31307	chr20:52570234:-	ONLY_REF_SPLICE	YES	981	6	0	0.25	0.0125	0.0125	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-	DMS114_LUNG	0	0.25	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000530
TE441T_SOFT_TISSUE	AHNAK--BSCL2	72	42	AHNAK	7225	chr11:62301133:-	BSCL2	39296	chr11:62460269:-	INCL_NON_REF_SPLICE	YES	30	5	0.79	0.96	1.3479	0.7863	AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-,BSCL2->Berardinelli-Seip_congenital_lipodystrophy_2_(seipin),chr11:62457747-62477317:-	TE441T_SOFT_TISSUE	0.79	0.96	2.1342	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	CIC--DUX4L11	60	13	CIC	17967	chr19:42799276:+	DUX4L11	22897	chr10:135484918:+	INCL_NON_REF_SPLICE	YES	4	0	0.95	1	1.1233	0.2434	CIC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},capicua_transcriptional_repressor,chr19:42772689-42799949:+,DUX4L11->chr10:135483662-135488584:+,double_homeobox_4_like_11	TE441T_SOFT_TISSUE	0.95	1	1.3667	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	RP11-123O10.4--GRIP1	25	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.468	0.1123	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TE441T_SOFT_TISSUE	1	1	0.5803	FALSE	416	2512	207	587	0	FALSE	ACH-000772
TE441T_SOFT_TISSUE	ICOSLG--BLVRB	24	0	ICOSLG	9127	chr21:45647857:-	BLVRB	18889	chr19:40963905:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4493	0	ICOSLG->chr21:45642874-45660849:-,inducible_T-cell_co-stimulator_ligand,BLVRB->biliverdin_reductase_B,chr19:40953696-40971747:-	TE441T_SOFT_TISSUE	1	1	0.4493	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	CIC--DUX4L11	18	0	CIC	17967	chr19:42799276:+	DUX4L11	24147	chr10:135488227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.337	0	CIC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},capicua_transcriptional_repressor,chr19:42772689-42799949:+,DUX4L11->chr10:135483662-135488584:+,double_homeobox_4_like_11	TE441T_SOFT_TISSUE	1	1	0.337	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	RP11-680G10.1--GSE1	10	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	15	1	0.44	0.1872	0.0374	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TE441T_SOFT_TISSUE	0.44	1	0.2246	TRUE	465	1949	224	605	0	FALSE	ACH-000772
TE441T_SOFT_TISSUE	C15orf57--CBX3	8	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	9	7	0.57	0.63	0.1498	0.0749	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TE441T_SOFT_TISSUE	0.57	0.63	0.2247	TRUE	267	562	48	632	0	FALSE	ACH-000772
TE441T_SOFT_TISSUE	C15orf57--CBX3	6	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	9	7	0.55	0.61	0.1123	0.0936	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TE441T_SOFT_TISSUE	0.55	0.61	0.2059	TRUE	267	562	48	632	0	FALSE	ACH-000772
TE441T_SOFT_TISSUE	RP11-680G10.1--GSE1	6	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.73	0.1123	0.0374	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TE441T_SOFT_TISSUE	0.73	1	0.1497	TRUE	458	1351	185	561	0	FALSE	ACH-000772
TE441T_SOFT_TISSUE	TIMM23B--PARGP1	6	2	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1123	0.0374	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	TE441T_SOFT_TISSUE	1	1	0.1497	TRUE	393	2105	140	19	0	FALSE	ACH-000772
TE441T_SOFT_TISSUE	CTD-2281E23.2--DLGAP2	6	0	CTD-2281E23.2	3418	chr8:1208883:+	DLGAP2	8510	chr8:1449532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1123	0	GTEx_FI:{Testis=[count:34=pct:32.4],Brain=[count:24=pct:3.6],Pituitary=[count:4=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Thyroid=[count:2=pct:1.1]},CTD-2281E23.2->chr8:1054882-1212580:+,DLGAP2->chr8:1449532-1656642:+,discs_large_homolog_associated_protein_2	TE441T_SOFT_TISSUE	1	1	0.1123	TRUE	49	61	1	13	0	FALSE	ACH-000772
TE441T_SOFT_TISSUE	MT-RNR2--SPTAN1	4	0	MT-RNR2	1245	chrM:1915:+	SPTAN1	7475	chr9:131329182:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0749	0	MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA,SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1	TE441T_SOFT_TISSUE	1	1	0.0749	FALSE	0	0	0	1	0	FALSE	ACH-000772
TE441T_SOFT_TISSUE	TNNT1--CALR	4	0	TNNT1	6739	chr19:55652575:-	CALR	18653	chr19:13054692:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0749	0	TNNT1->chr19:55644162-55660722:-,troponin_T1,_slow_skeletal_type,CALR->calreticulin,chr19:13049392-13055303:+	TE441T_SOFT_TISSUE	1	1	0.0749	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	C20orf96--GFRA2	3	0	C20orf96	8854	chr20:251728:-	GFRA2	16717	chr8:21640389:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	C20orf96->chr20:251504-271390:-,chromosome_20_open_reading_frame_96,GFRA2->GDNF_family_receptor_alpha_2,chr8:21547915-21669869:-	TE441T_SOFT_TISSUE	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	MAPK8IP3--MT-ND2	3	0	MAPK8IP3	17717	chr16:1814404:+	MT-ND2	27403	chrM:5241:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	MAPK8IP3->chr16:1756184-1820318:+,mitogen-activated_protein_kinase_8_interacting_protein_3,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TE441T_SOFT_TISSUE	1	1	0.0562	FALSE	0	0	0	1	0	FALSE	ACH-000772
TE441T_SOFT_TISSUE	MDGA1--ILF3	3	0	MDGA1	6984	chr6:37623565:-	ILF3	49377	chr19:10801858:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	MDGA1->MAM_domain_containing_glycosylphosphatidylinositol_anchor_1,chr6:37600284-37667082:-,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	TE441T_SOFT_TISSUE	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	MT-ND2--MT-ND1	3	0	MT-ND2	1922	chrM:5391:+	MT-ND1	5317	chrM:3581:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[208],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	TE441T_SOFT_TISSUE	1	1	0.0562	FALSE	34	56	8	1	0	FALSE	ACH-000772
TE441T_SOFT_TISSUE	MXD4--P4HB	3	0	MXD4	11706	chr4:2249858:-	P4HB	20732	chr17:79805148:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	MXD4->MAX_dimerization_protein_4,chr4:2249159-2264021:-,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	TE441T_SOFT_TISSUE	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	POLE--AHNAK	3	0	POLE	32442	chr12:133210909:-	AHNAK	44368	chr11:62303999:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-	TE441T_SOFT_TISSUE	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	SURF4--SLC9A1	3	0	SURF4	2437	chr9:136234161:-	SLC9A1	25047	chr1:27425940:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	SURF4->chr9:136228325-136242970:-,surfeit_4,SLC9A1->chr1:27425306-27493472:-,solute_carrier_family_9_member_A1	TE441T_SOFT_TISSUE	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	TTLL12--OBSCN	3	0	TTLL12	9488	chr22:43568488:-	OBSCN	69543	chr1:228495020:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	TTLL12->chr22:43562628-43583139:-,tubulin_tyrosine_ligase_like_12,OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF	TE441T_SOFT_TISSUE	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	AHNAK--BSCL2	2	1	AHNAK	5883	chr11:62302475:-	BSCL2	39296	chr11:62460269:-	ONLY_REF_SPLICE	YES	63	5	0.05	0.38	0.0374	0.0187	AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-,BSCL2->Berardinelli-Seip_congenital_lipodystrophy_2_(seipin),chr11:62457747-62477317:-	TE441T_SOFT_TISSUE	0.05	0.38	0.0561	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	CCM2--SEC31A	2	0	CCM2	1889	chr7:45039962:+	SEC31A	54637	chr4:83748785:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	CCM2->CCM2_scaffolding_protein,chr7:45039074-45116068:+,SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	CLIC4--ZNF876P	2	0	CLIC4	1269	chr1:25072116:+	ZNF876P	17135	chr4:247349:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,ZNF876P->chr4:206399-249774:+,zinc_finger_protein_876,_pseudogene	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	FGFR1--TRIP12	2	0	FGFR1	9195	chr8:38314874:-	TRIP12	39042	chr2:230723547:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	FGFR1->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr8:38268656-38326352:-,fibroblast_growth_factor_receptor_1,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	MAN1B1--RPS27A	2	0	MAN1B1	3079	chr9:139983457:+	RPS27A	21924	chr2:55461967:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	MAN1B1->chr9:139981379-140003635:+,mannosidase_alpha_class_1B_member_1,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	MKLN1--SLC25A13	2	0	MKLN1	5544	chr7:131012756:+	SLC25A13	40610	chr7:95926263:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	MKLN1->chr7:130794855-131181395:+,muskelin_1,SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	OIP5-AS1--LPIN2	2	0	OIP5-AS1	3111	chr15:41578298:+	LPIN2	28318	chr18:2960847:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	OIP5-AS1->OIP5_antisense_RNA_1,chr15:41576188-41601901:+,LPIN2->chr18:2916992-3013313:-,lipin_2	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	PRICKLE4--ABCB6	2	0	PRICKLE4	7536	chr6:41755563:+	ABCB6	18946	chr2:220077213:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	PRICKLE4->chr6:41748087-41757879:+,prickle_planar_cell_polarity_protein_4,ABCB6->ATP_binding_cassette_subfamily_B_member_6_(Langereis_blood_group),chr2:220074490-220083712:-	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	RGS12--MPHOSPH8	2	0	RGS12	8553	chr4:3344780:+	MPHOSPH8	50366	chr13:20245346:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	RGS12->chr4:3294755-3441640:+,regulator_of_G-protein_signaling_12,MPHOSPH8->M-phase_phosphoprotein_8,chr13:20207788-20247599:+	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	RP11-123O10.4--GRIP1	1	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0.0749	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TE441T_SOFT_TISSUE	1	1	0.0936	FALSE	93	270	15	244	0	FALSE	ACH-000772
TE441T_SOFT_TISSUE	RTCB--ASCC3	2	0	RTCB	9425	chr22:32792061:-	ASCC3	63931	chr6:100957409:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	RTCB->RNA_2',3'-cyclic_phosphate_and_5'-OH_ligase,chr22:32783569-32808242:-,ASCC3->activating_signal_cointegrator_1_complex_subunit_3,chr6:100956070-101329248:-	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	SQLE--PAXBP1	2	0	SQLE	2198	chr8:126011936:+	PAXBP1	26296	chr21:34127664:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0374	0	SQLE->chr8:126010739-126034525:+,squalene_epoxidase,PAXBP1->PAX3_and_PAX7_binding_protein_1,chr21:34106210-34144169:-	TE441T_SOFT_TISSUE	1	1	0.0374	TRUE	0	0	0	1	0	TRUE	ACH-000772
TE441T_SOFT_TISSUE	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0187	0.0187	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TE441T_SOFT_TISSUE	0.33	1	0.0374	FALSE	292	1546	117	613	0	FALSE	ACH-000772
SW1573_LUNG	NEAT1--LTBP3	104	31	NEAT1	19669	chr11:65208913:+	LTBP3	42363	chr11:65307352:-	INCL_NON_REF_SPLICE	YES	2	6	0.99	0.96	1.8062	0.5384	LOCAL_INVERSION:+:-:[93265],NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding),LTBP3->Oncogene{Bushman},chr11:65306276-65326401:-,latent_transforming_growth_factor_beta_binding_protein_3	SW1573_LUNG	0.96	0.99	2.3446	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	NEAT1--LTBP3	26	12	NEAT1	1610	chr11:65190854:+	LTBP3	42363	chr11:65307352:-	ONLY_REF_SPLICE	YES	98	6	0.28	0.86	0.4516	0.2084	LOCAL_INVERSION:+:-:[93265],NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding),LTBP3->Oncogene{Bushman},chr11:65306276-65326401:-,latent_transforming_growth_factor_beta_binding_protein_3	SW1573_LUNG	0.28	0.86	0.66	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	TCF7L1--TMSB10	22	11	TCF7L1	2041	chr2:85361573:+	TMSB10	20657	chr2:85133127:+	ONLY_REF_SPLICE	YES	3	1	0.92	0.97	0.3821	0.191	TCF7L1->chr2:85360533-85537511:+,transcription_factor_7_like_1,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10	SW1573_LUNG	0.92	0.97	0.5731	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	TIMM23B--PARGP1	15	4	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2605	0.0695	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	SW1573_LUNG	1	1	0.33	TRUE	393	2105	140	19	0	FALSE	ACH-000677
SW1573_LUNG	LARP4B--TSPAN33	13	9	LARP4B	5738	chr10:930387:-	TSPAN33	31290	chr7:128801520:+	ONLY_REF_SPLICE	YES	9	1	0.71	0.96	0.2258	0.1563	{Klijn_CCL:Lung=1},LARP4B->La_ribonucleoprotein_domain_family_member_4B,chr10:855484-977564:-,TSPAN33->chr7:128784712-128808671:+,tetraspanin_33	SW1573_LUNG	0.71	0.96	0.3821	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	NEAT1--LTBP3	3	35	NEAT1	20585	chr11:65209829:+	LTBP3	42317	chr11:65307398:-	INCL_NON_REF_SPLICE	YES	5	9	0.88	0.81	0.0521	0.6079	LOCAL_INVERSION:+:-:[93265],NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding),LTBP3->Oncogene{Bushman},chr11:65306276-65326401:-,latent_transforming_growth_factor_beta_binding_protein_3	SW1573_LUNG	0.81	0.88	0.66	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	OR51S1--TP53I11	11	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.191	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SW1573_LUNG	1	1	0.191	TRUE	402	216	10	229	0	FALSE	ACH-000677
SW1573_LUNG	NEAT1--LTBP3	6	15	NEAT1	2241	chr11:65191485:+	LTBP3	42363	chr11:65307352:-	INCL_NON_REF_SPLICE	YES	45	6	0.32	0.78	0.1042	0.2605	LOCAL_INVERSION:+:-:[93265],NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding),LTBP3->Oncogene{Bushman},chr11:65306276-65326401:-,latent_transforming_growth_factor_beta_binding_protein_3	SW1573_LUNG	0.32	0.78	0.3647	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	TIMM23--RP11-464F9.1	8	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	68	0	0.13	1	0.1389	0.0347	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SW1573_LUNG	0.13	1	0.1736	TRUE	519	3926	326	965	0	FALSE	ACH-000677
SW1573_LUNG	ME2--DCC	6	3	ME2	2380	chr18:48422298:+	DCC	41986	chr18:50683726:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1042	0.0521	ME2->chr18:48405419-48474691:+,malic_enzyme_2,DCC->DCC_netrin_1_receptor,Oncogene{Bushman},chr18:49866542-51057784:+	SW1573_LUNG	1	1	0.1563	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	LARP4B--TSPAN33	3	10	LARP4B	6809	chr10:915953:-	TSPAN33	31290	chr7:128801520:+	ONLY_REF_SPLICE	YES	11	1	0.54	0.93	0.0521	0.1737	{Klijn_CCL:Lung=1},LARP4B->La_ribonucleoprotein_domain_family_member_4B,chr10:855484-977564:-,TSPAN33->chr7:128784712-128808671:+,tetraspanin_33	SW1573_LUNG	0.54	0.93	0.2258	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	RP11-275N1.1--NEBL	5	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0868	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	SW1573_LUNG	1	1	0.0868	TRUE	0	0	0	21	0	FALSE	ACH-000677
SW1573_LUNG	RP11-275N1.1--NEBL	3	5	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	1	7	0.89	0.53	0.0521	0.0868	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	SW1573_LUNG	0.53	0.89	0.1389	TRUE	0	2	0	25	2	FALSE	ACH-000677
SW1573_LUNG	G3BP1--NNT	4	0	G3BP1	1992	chr5:151151597:+	NNT	49884	chr5:43700221:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0695	0	G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,NNT->chr5:43602794-43707507:+,nicotinamide_nucleotide_transhydrogenase	SW1573_LUNG	1	1	0.0695	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	COPE--LONP1	3	0	COPE	8472	chr19:19014160:-	LONP1	22745	chr19:5707117:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	COPE->chr19:19010323-19030206:-,coatomer_protein_complex_subunit_epsilon,LONP1->chr19:5691845-5720583:-,lon_peptidase_1,_mitochondrial	SW1573_LUNG	1	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	MAP1B--MT-ND5	3	0	MAP1B	14124	chr5:71495486:+	MT-ND5	24627	chrM:12407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	MAP1B->chr5:71403061-71505395:+,microtubule_associated_protein_1B,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SW1573_LUNG	1	1	0.0521	FALSE	0	0	0	1	0	FALSE	ACH-000677
SW1573_LUNG	MIF4GD--NHSL1	3	0	MIF4GD	1709	chr17:73266600:-	NHSL1	23529	chr6:138752681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	MIF4GD->MIF4G_domain_containing,chr17:73262309-73267308:-,NHSL1->NHS_like_1,chr6:138743180-139013708:-	SW1573_LUNG	1	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	PDXK--AP1M1	3	0	PDXK	26721	chr21:45179471:+	AP1M1	44804	chr19:16345333:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	PDXK->Oncogene{Bushman},chr21:45138975-45182188:+,pyridoxal_(pyridoxine,_vitamin_B6)_kinase,AP1M1->adaptor_related_protein_complex_1_mu_1_subunit,chr19:16308389-16346160:+	SW1573_LUNG	1	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	PTK2--PON2	3	0	PTK2	47959	chr8:141710990:-	PON2	72681	chr7:95041789:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0521	0	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,PON2->chr7:95034175-95064510:-,paraoxonase_2	SW1573_LUNG	1	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	RP11-69I8.3--CDKN1A	3	0	RP11-69I8.3	1258	chr6:132272343:+	CDKN1A	11243	chr6:36651951:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	RP11-69I8.3->chr6:132272086-132398533:+,CDKN1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:36644305-36655116:+,cyclin-dependent_kinase_inhibitor_1A	SW1573_LUNG	1	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	SPRY4--MT-RNR2	3	0	SPRY4	7635	chr5:141692713:-	MT-RNR2	13962	chrM:2276:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	SPRY4->chr5:141689992-141706020:-,sprouty_RTK_signaling_antagonist_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SW1573_LUNG	1	1	0.0521	FALSE	0	0	0	1	0	FALSE	ACH-000677
SW1573_LUNG	HAS3--TANGO6	2	1	HAS3	5870	chr16:69147445:+	TANGO6	37805	chr16:69074211:+	ONLY_REF_SPLICE	YES	4	5	0.43	0.38	0.0347	0.0174	LOCAL_REARRANGEMENT:+:[20384],HAS3->chr16:69139467-69152622:+,hyaluronan_synthase_3,TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog	SW1573_LUNG	0.38	0.43	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	APLP2--BSCL2	2	0	APLP2	10507	chr11:129992408:+	BSCL2	31501	chr11:62474796:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+,BSCL2->Berardinelli-Seip_congenital_lipodystrophy_2_(seipin),chr11:62457747-62477317:-	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	BMI1--LTBP3	2	0	BMI1	1486	chr10:22610625:+	LTBP3	27384	chr11:65307352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+,LTBP3->Oncogene{Bushman},chr11:65306276-65326401:-,latent_transforming_growth_factor_beta_binding_protein_3	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	C15orf40--RPLP2	2	0	C15orf40	3533	chr15:83677300:-	RPLP2	16346	chr11:812535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	C15orf40->chr15:83657193-83680393:-,chromosome_15_open_reading_frame_40,RPLP2->chr11:809647-812880:+,ribosomal_protein_lateral_stalk_subunit_P2	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	C4orf36--SPATS2	2	0	C4orf36	4981	chr4:87853374:-	SPATS2	36156	chr12:49893853:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Small_Intestine_-_Terminal_Ileum=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Whole_Blood=1,Colon_-_Transverse=1},C4orf36->chr4:87797358-87857354:-,chromosome_4_open_reading_frame_36,SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2	SW1573_LUNG	1	1	0.0347	TRUE	0	1	0	1	1	TRUE	ACH-000677
SW1573_LUNG	CHST11--WNT5A	2	0	CHST11	2941	chr12:104851292:+	WNT5A	17496	chr3:55514946:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,WNT5A->Oncogene{Bushman},Wnt_family_member_5A,chr3:55499743-55523973:-	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	FAM120A--ERP44	2	0	FAM120A	1668	chr9:96214671:+	ERP44	38933	chr9:102747351:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	FAM120A->chr9:96214004-96328397:+,family_with_sequence_similarity_120A,ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	FOXP1--SMC6	2	0	FOXP1	19737	chr3:71247353:-	SMC6	54736	chr2:17927218:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,SMC6->chr2:17845079-17981509:-,structural_maintenance_of_chromosomes_6	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	GNPTG--FBXL16	2	0	GNPTG	1384	chr16:1402307:+	FBXL16	11675	chr16:747419:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GNPTG->N-acetylglucosamine-1-phosphate_transferase_gamma_subunit,chr16:1401924-1413352:+,FBXL16->F-box_and_leucine-rich_repeat_protein_16,chr16:742500-755829:-	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	INTS4--MIPEP	2	0	INTS4	6189	chr11:77690042:-	MIPEP	35031	chr13:24460645:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,MIPEP->chr13:24304328-24463558:-,mitochondrial_intermediate_peptidase	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	MOSPD1--IL13RA1	2	0	MOSPD1	1086	chrX:134049212:-	IL13RA1	22287	chrX:117907842:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	MOSPD1->chrX:134021656-134049297:-,motile_sperm_domain_containing_1,IL13RA1->chrX:117861535-117928502:+,interleukin_13_receptor_subunit_alpha_1	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	MPG--ZNF737	2	0	MPG	3694	chr16:129699:+	ZNF737	15164	chr19:20728782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	MPG->N-methylpurine_DNA_glycosylase,chr16:127006-135852:+,ZNF737->chr19:20718631-20748615:-,zinc_finger_protein_737	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	NKTR--EIF5	2	0	NKTR	15451	chr3:42674315:+	EIF5	34477	chr14:103803014:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	NKTR->chr3:42642106-42690227:+,natural_killer_cell_triggering_receptor,EIF5->chr14:103799881-103811362:+,eukaryotic_translation_initiation_factor_5	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	PITPNB--C5orf42	2	0	PITPNB	8332	chr22:28290543:-	C5orf42	62974	chr5:37148370:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	PITPNB->chr22:28247657-28316122:-,phosphatidylinositol_transfer_protein_beta,C5orf42->chr5:37106330-37249530:-,chromosome_5_open_reading_frame_42	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	POLE--FBRSL1	2	0	POLE	1112	chr12:133263840:-	FBRSL1	44444	chr12:133084739:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_INVERSION:-:+:[38574],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	TMCO3--ING1	2	0	TMCO3	12355	chr13:114193822:+	ING1	24851	chr13:111371576:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	TRIM24--ZNF431	2	0	TRIM24	15425	chr7:138255748:+	ZNF431	44825	chr19:21372668:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	TRIM24->Oncogene{Bushman},chr7:138145079-138274738:+,tripartite_motif_containing_24,ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	TSPAN5--TRMT10A	2	0	TSPAN5	1484	chr4:99579297:-	TRMT10A	21817	chr4:100480518:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,TRMT10A->chr4:100467866-100485189:-,tRNA_methyltransferase_10A	SW1573_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000677
SW1573_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0.0521	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW1573_LUNG	1	1	0.0695	FALSE	515	4851	409	746	0	FALSE	ACH-000677
SW1573_LUNG	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0174	0.0174	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SW1573_LUNG	1	1	0.0348	FALSE	416	2512	207	587	0	FALSE	ACH-000677
U178_CENTRAL_NERVOUS_SYSTEM	ZNF71--BASP1	274	137	ZNF71	2250	chr19:57112959:+	BASP1	18677	chr5:17275317:+	ONLY_REF_SPLICE	YES	65	416	0.86	0.5	3.4655	1.7328	ZNF71->chr19:57106632-57137849:+,zinc_finger_protein_71,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	U178_CENTRAL_NERVOUS_SYSTEM	0.5	0.86	5.1983	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	57	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7209	0.1138	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.8347	FALSE	462	80	0	856	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MYO10--RP11-321E2.3	47	37	MYO10	1476	chr5:16935897:-	RP11-321E2.3	55325	chr5:17441578:+	ONLY_REF_SPLICE	YES	43	1	0.66	0.99	0.5945	0.468	MYO10->chr5:16665395-16936372:-,myosin_X,RP11-321E2.3->chr5:17404128-17441803:+	U178_CENTRAL_NERVOUS_SYSTEM	0.66	0.99	1.0625	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	50	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6324	0.2024	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.8348	TRUE	508	994	45	981	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MYH9--GNAI2	33	1	MYH9	37517	chr22:36681710:-	GNAI2	55272	chr3:50289938:+	INCL_NON_REF_SPLICE	YES	3132	1980	0.01	0.02	0.4174	0.0126	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,GNAI2->G_protein_subunit_alpha_i2,Oncogene{Bushman},chr3:50263724-50296787:+	U178_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.43	TRUE	0	0	0	1	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	KANSL1--ARL17B	28	15	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	36	48	0.54	0.47	0.3541	0.1897	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	U178_CENTRAL_NERVOUS_SYSTEM	0.47	0.54	0.5438	TRUE	181	1564	124	196	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	28	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	205	6	0.14	0.85	0.3541	0.0632	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	U178_CENTRAL_NERVOUS_SYSTEM	0.14	0.85	0.4173	TRUE	519	3926	326	965	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	28	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3541	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.3541	TRUE	7	10	0	216	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	24	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3035	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.3035	TRUE	402	216	10	229	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	ZNF71--BASP1	4	75	ZNF71	1165	chr19:57106796:+	BASP1	18677	chr5:17275317:+	ONLY_REF_SPLICE	YES	58	416	0.58	0.16	0.0506	0.9486	ZNF71->chr19:57106632-57137849:+,zinc_finger_protein_71,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	U178_CENTRAL_NERVOUS_SYSTEM	0.16	0.58	0.9992	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	CTD-2583A14.10--CDH18	14	31	CTD-2583A14.10	1227	chr19:58331313:+	CDH18	14469	chr5:19981287:-	ONLY_REF_SPLICE	YES	20	8	0.69	0.85	0.1771	0.3921	CTD-2583A14.10->chr19:58331087-58370309:+,CDH18->cadherin_18,chr5:19473060-20575982:-	U178_CENTRAL_NERVOUS_SYSTEM	0.69	0.85	0.5692	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MIPEPP3--ABHD12	21	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2656	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.2656	TRUE	64	202	9	44	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	18	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	10629	2	0	0.9	0.2277	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	U178_CENTRAL_NERVOUS_SYSTEM	0	0.9	0.2403	FALSE	230	193	14	283	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	13	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10742	4	0	0.78	0.1644	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	U178_CENTRAL_NERVOUS_SYSTEM	0	0.78	0.177	FALSE	230	198	14	283	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MYO10--RP11-321E2.3	3	38	MYO10	2949	chr5:16916164:-	RP11-321E2.3	55325	chr5:17441578:+	ONLY_REF_SPLICE	YES	44	1	0.48	0.98	0.0379	0.4806	MYO10->chr5:16665395-16936372:-,myosin_X,RP11-321E2.3->chr5:17404128-17441803:+	U178_CENTRAL_NERVOUS_SYSTEM	0.48	0.98	0.5185	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	11	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	11	1	0.54	0.1391	0.0253	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	U178_CENTRAL_NERVOUS_SYSTEM	0.54	1	0.1644	TRUE	465	1949	224	605	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	CTD-2583A14.10--CDH18	3	31	CTD-2583A14.10	1831	chr19:58331917:+	CDH18	14469	chr5:19981287:-	ONLY_REF_SPLICE	YES	21	8	0.62	0.81	0.0379	0.3921	CTD-2583A14.10->chr19:58331087-58370309:+,CDH18->cadherin_18,chr5:19473060-20575982:-	U178_CENTRAL_NERVOUS_SYSTEM	0.62	0.81	0.43	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	10	3	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	4978	0	0	1	0.1265	0.0379	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	U178_CENTRAL_NERVOUS_SYSTEM	0	1	0.1644	TRUE	1	0	0	97	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	ANPEP--MT-ND4L	10	2	ANPEP	16060	chr15:90328379:-	MT-ND4L	19321	chrM:10471:+	INCL_NON_REF_SPLICE	YES	953	0	0.01	1	0.1265	0.0253	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	U178_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.1518	FALSE	0	1	0	16	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	10	1	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	25	4	0.31	0.73	0.1265	0.0126	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	U178_CENTRAL_NERVOUS_SYSTEM	0.31	0.73	0.1391	FALSE	59	21	0	114	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	8	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	4	1	0.79	0.1012	0.0885	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	U178_CENTRAL_NERVOUS_SYSTEM	0.79	1	0.1897	TRUE	458	1351	185	561	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	9	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	25	3	0.31	0.79	0.1138	0.0253	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	U178_CENTRAL_NERVOUS_SYSTEM	0.31	0.79	0.1391	FALSE	59	21	0	114	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	7	10	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13811	57	0	0.23	0.0885	0.1265	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	U178_CENTRAL_NERVOUS_SYSTEM	0	0.23	0.215	FALSE	231	217	16	283	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	7	10	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	13811	173	0	0.09	0.0885	0.1265	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	U178_CENTRAL_NERVOUS_SYSTEM	0	0.09	0.215	FALSE	231	217	16	283	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	6	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	88	56	0.18	0.25	0.0759	0.1644	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	U178_CENTRAL_NERVOUS_SYSTEM	0.18	0.25	0.2403	TRUE	267	562	48	632	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-CO2--MT-RNR2	8	5	MT-CO2	1240	chrM:7825:+	MT-RNR2	4704	chrM:1690:+	INCL_NON_REF_SPLICE	YES	17770	0	0	1	0.1012	0.0632	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	U178_CENTRAL_NERVOUS_SYSTEM	0	1	0.1644	FALSE	24	6	1	8	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	7	7	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14392	57	0	0.2	0.0885	0.0885	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	U178_CENTRAL_NERVOUS_SYSTEM	0	0.2	0.177	FALSE	231	217	16	283	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	7	4	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	17579	603	0	0.02	0.0885	0.0506	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	U178_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.1391	FALSE	231	217	16	283	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	8	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1012	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.1012	TRUE	0	0	0	434	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	CTD-2583A14.10--CDH18	5	11	CTD-2583A14.10	1227	chr19:58331313:+	CDH18	19005	chr5:19839351:-	ONLY_REF_SPLICE	YES	20	13	0.44	0.55	0.0632	0.1391	CTD-2583A14.10->chr19:58331087-58370309:+,CDH18->cadherin_18,chr5:19473060-20575982:-	U178_CENTRAL_NERVOUS_SYSTEM	0.44	0.55	0.2023	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	7	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0885	0.0126	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.1011	FALSE	462	80	0	856	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	5	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0.1012	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.1644	FALSE	462	80	0	856	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	5	5	FTH1	1289	chr11:61734844:-	ACTB	11626	chr7:5570197:-	INCL_NON_REF_SPLICE	YES	5490	0	0	1	0.0632	0.0632	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	U178_CENTRAL_NERVOUS_SYSTEM	0	1	0.1264	TRUE	1	0	0	97	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-CO2--MT-RNR2	5	5	MT-CO2	1259	chrM:7844:+	MT-RNR2	4721	chrM:1707:+	INCL_NON_REF_SPLICE	YES	18580	0	0	1	0.0632	0.0632	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	U178_CENTRAL_NERVOUS_SYSTEM	0	1	0.1264	FALSE	24	6	1	8	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	CALM3--MT-ND4L	5	4	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1620	0	0.01	1	0.0632	0.0506	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	U178_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.1138	FALSE	1	1	0	107	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	3	12	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0.1518	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.1897	FALSE	462	80	0	856	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	3	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	83	56	0.14	0.2	0.0379	0.1391	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	U178_CENTRAL_NERVOUS_SYSTEM	0.14	0.2	0.177	TRUE	267	562	48	632	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-CO2--MT-RNR2	3	11	MT-CO2	1320	chrM:7905:+	MT-RNR2	4704	chrM:1690:+	INCL_NON_REF_SPLICE	YES	19040	0	0	1	0.0379	0.1391	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	U178_CENTRAL_NERVOUS_SYSTEM	0	1	0.177	FALSE	24	6	1	8	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-CO2--MT-RNR2	3	10	MT-CO2	1302	chrM:7887:+	MT-RNR2	4747	chrM:1733:+	INCL_NON_REF_SPLICE	YES	18677	0	0	1	0.0379	0.1265	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	U178_CENTRAL_NERVOUS_SYSTEM	0	1	0.1644	FALSE	24	6	1	8	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-CO2--MT-RNR2	4	6	MT-CO2	1347	chrM:7932:+	MT-RNR2	5287	chrM:2273:+	INCL_NON_REF_SPLICE	YES	18980	7419	0	0	0.0506	0.0759	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	U178_CENTRAL_NERVOUS_SYSTEM	0	0	0.1265	FALSE	24	6	1	8	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12819	4	0	0.64	0.0632	0.0253	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	U178_CENTRAL_NERVOUS_SYSTEM	0	0.64	0.0885	FALSE	231	205	14	283	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	6	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	14775	0	0	1	0.0506	0.0759	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	U178_CENTRAL_NERVOUS_SYSTEM	0	1	0.1265	FALSE	231	217	16	283	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	COL3A1--COL6A1	5	1	COL3A1	14402	chr2:189861918:+	COL6A1	37823	chr21:47409008:+	INCL_NON_REF_SPLICE	YES	3352	2254	0	0	0.0632	0.0126	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	U178_CENTRAL_NERVOUS_SYSTEM	0	0	0.0758	FALSE	0	0	0	1	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-CO2--MT-RNR2	4	5	MT-CO2	1278	chrM:7863:+	MT-RNR2	4740	chrM:1726:+	INCL_NON_REF_SPLICE	YES	18600	0	0	1	0.0506	0.0632	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	U178_CENTRAL_NERVOUS_SYSTEM	0	1	0.1138	FALSE	24	6	1	8	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	5	0	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0632	FALSE	59	21	0	114	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-CO2--MT-RNR2	4	3	MT-CO2	1216	chrM:7801:+	MT-RNR2	4692	chrM:1678:+	INCL_NON_REF_SPLICE	YES	16033	0	0	1	0.0506	0.0379	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	U178_CENTRAL_NERVOUS_SYSTEM	0	1	0.0885	FALSE	24	6	1	8	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	COL3A1--LDHA	4	2	COL3A1	25702	chr2:189873719:+	LDHA	32631	chr11:18416110:+	INCL_NON_REF_SPLICE	YES	4341	4	0	0.6	0.0506	0.0253	COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	U178_CENTRAL_NERVOUS_SYSTEM	0	0.6	0.0759	FALSE	0	0	0	2	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	4	2	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	25	2	0.19	0.75	0.0506	0.0253	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	U178_CENTRAL_NERVOUS_SYSTEM	0.19	0.75	0.0759	FALSE	59	21	0	114	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-CO2--MT-RNR2	3	6	MT-CO2	1320	chrM:7905:+	MT-RNR2	5267	chrM:2253:+	INCL_NON_REF_SPLICE	YES	19040	7753	0	0	0.0379	0.0759	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	U178_CENTRAL_NERVOUS_SYSTEM	0	0	0.1138	FALSE	24	6	1	8	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	4	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0506	0.0253	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	U178_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.0759	TRUE	254	575	65	124	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	4	0	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0506	FALSE	59	21	0	114	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-CO2--MT-RNR2	3	4	MT-CO2	1267	chrM:7852:+	MT-RNR2	5224	chrM:2210:+	INCL_NON_REF_SPLICE	YES	18566	7713	0	0	0.0379	0.0506	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	U178_CENTRAL_NERVOUS_SYSTEM	0	0	0.0885	FALSE	24	6	1	8	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	4	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	14891	1285	0	0.01	0.0379	0.0506	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	U178_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0885	FALSE	231	217	16	283	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	CTD-2583A14.10--CDH18	1	11	CTD-2583A14.10	1831	chr19:58331917:+	CDH18	19005	chr5:19839351:-	ONLY_REF_SPLICE	YES	21	13	0.36	0.48	0.0126	0.1391	CTD-2583A14.10->chr19:58331087-58370309:+,CDH18->cadherin_18,chr5:19473060-20575982:-	U178_CENTRAL_NERVOUS_SYSTEM	0.36	0.48	0.1517	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	COL3A1--COL6A1	3	2	COL3A1	20173	chr2:189868190:+	COL6A1	42540	chr21:47414081:+	ONLY_REF_SPLICE	YES	5742	2546	0	0	0.0379	0.0253	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	U178_CENTRAL_NERVOUS_SYSTEM	0	0	0.0632	FALSE	0	0	0	1	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	COL3A1--LDHA	3	2	COL3A1	25709	chr2:189873726:+	LDHA	32638	chr11:18416117:+	INCL_NON_REF_SPLICE	YES	4184	5	0	0.5	0.0379	0.0253	COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	U178_CENTRAL_NERVOUS_SYSTEM	0	0.5	0.0632	FALSE	0	0	0	2	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	LOXL1--MT-ATP6	3	2	LOXL1	2328	chr15:74219657:+	MT-ATP6	12993	chrM:8575:+	INCL_NON_REF_SPLICE	YES	196	0	0.02	1	0.0379	0.0253	LOXL1->chr15:74218330-74244478:+,lysyl_oxidase_like_1,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	U178_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0632	FALSE	0	0	0	1	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	CCDC171--SH3GL2	3	1	CCDC171	41513	chr9:15920420:+	SH3GL2	63322	chr9:17786379:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0379	0.0126	CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171,SH3GL2->Oncogene{Bushman},SH3_domain_containing_GRB2_like_2,chr9:17579080-17797127:+	U178_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	LOXL1--MT-ATP6	3	1	LOXL1	2310	chr15:74219639:+	MT-ATP6	12993	chrM:8575:+	INCL_NON_REF_SPLICE	YES	235	0	0.02	1	0.0379	0.0126	LOXL1->chr15:74218330-74244478:+,lysyl_oxidase_like_1,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	U178_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0505	FALSE	0	0	0	1	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	3	0	FTH1	1181	chr11:61734952:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	TRUE	1	0	0	97	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	ITGA3--TUBB	3	0	ITGA3	12301	chr17:48153818:+	TUBB	28691	chr6:30691270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	ITGA3->chr17:48133332-48167845:+,integrin_subunit_alpha_3,TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	TRUE	0	0	0	5	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	0	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	FALSE	231	204	14	283	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	PRKCSH--LGALS1	3	0	PRKCSH	11051	chr19:11560150:+	LGALS1	15725	chr22:38071655:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	PRKCSH->chr19:11546109-11561783:+,protein_kinase_C_substrate_80K-H,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	TRUE	0	0	0	3	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.86	0.75	0.0253	0.0506	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	U178_CENTRAL_NERVOUS_SYSTEM	0.75	0.86	0.0759	FALSE	515	4851	409	746	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	SLC1A5--MT-ND4L	3	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	FALSE	0	0	0	189	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	SQSTM1--SERPINE1	3	0	SQSTM1	14489	chr5:179260129:+	SERPINE1	20885	chr7:100770469:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	SQSTM1->chr5:179233388-179265078:+,sequestosome_1,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	ZNF71--BASP1	3	0	ZNF71	1063	chr19:57106694:+	BASP1	18677	chr5:17275317:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	ZNF71->chr19:57106632-57137849:+,zinc_finger_protein_71,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0.0126	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	TRUE	477	1352	189	275	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	CDKN3--CDK15	2	0	CDKN3	4599	chr14:54875507:+	CDK15	25611	chr2:202719597:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3,CDK15->chr2:202655184-202760273:+,cyclin-dependent_kinase_15	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	COL6A1--LINC00888	2	0	COL6A1	14419	chr21:47419606:+	LINC00888	26259	chr3:183171800:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1,LINC00888->chr3:183165396-183173801:+,long_intergenic_non-protein_coding_RNA_888	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	DIS3L2--GAS5	2	0	DIS3L2	14009	chr2:233028342:+	GAS5	43399	chr1:173833644:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	DIS3L2->DIS3_like_3'-5'_exoribonuclease_2,chr2:232825955-233209060:+,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	9	0	44	1	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	GTF2A2--SCFD1	2	0	GTF2A2	1136	chr15:59949605:-	SCFD1	39246	chr14:31185130:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTF2A2->chr15:59930261-59949740:-,general_transcription_factor_IIA_subunit_2,SCFD1->chr14:31091318-31205018:+,sec1_family_domain_containing_1	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	HP1BP3--EIF4G3	2	0	HP1BP3	1129	chr1:21113688:-	EIF4G3	28440	chr1:21415706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	2	0	6	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	KIAA1467--ARHGAP24	2	0	KIAA1467	11392	chr12:13229077:+	ARHGAP24	43163	chr4:86921632:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	KIAA1467->chr12:13197218-13295455:+,ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	FALSE	292	1546	117	613	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	RB1--ITM2B	2	0	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	53	73	8	19	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	SKP2--UBE2I	2	0	SKP2	1282	chr5:36152372:+	UBE2I	23635	chr16:1364294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	SKP2->Oncogene{Bushman},S-phase_kinase-associated_protein_2,_E3_ubiquitin_protein_ligase,chr5:36152091-36184421:+,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	SNX24--SNX2	2	0	SNX24	3255	chr5:122181388:+	SNX2	24349	chr5:122130961:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[13331],SNX24->chr5:122179134-122365049:+,sorting_nexin_24,SNX2->chr5:122110691-122165803:+,sorting_nexin_2	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	1	0	1	1	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	UBFD1--USP37	2	0	UBFD1	9895	chr16:23578390:+	USP37	22415	chr2:219418447:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	UBFD1->chr16:23568392-23585710:+,ubiquitin_family_domain_containing_1,USP37->chr2:219314974-219433084:-,ubiquitin_specific_peptidase_37	U178_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	ANXA1--COL1A2	1	1	ANXA1	7633	chr9:75777777:+	COL1A2	26541	chr7:94037648:+	ONLY_REF_SPLICE	YES	2659	8064	0	0	0.0126	0.0126	ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	U178_CENTRAL_NERVOUS_SYSTEM	0	0	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	COL3A1--LDHA	1	1	COL3A1	20173	chr2:189868190:+	LDHA	32630	chr11:18416109:+	ONLY_REF_SPLICE	NO	5742	3	0	0.4	0.0126	0.0126	COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	U178_CENTRAL_NERVOUS_SYSTEM	0	0.4	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000208
U178_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	81	0.5	0.02	0.0126	0.0126	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	U178_CENTRAL_NERVOUS_SYSTEM	0.02	0.5	0.0252	FALSE	16	356	14	466	0	FALSE	ACH-000208
GSU_STOMACH	USP4--TCAIM	467	202	USP4	1789	chr3:49377357:-	TCAIM	36045	chr3:44396231:+	ONLY_REF_SPLICE	YES	38	93	0.95	0.88	5.5359	2.3946	USP4->Oncogene{Bushman},chr3:49315264-49378145:-,ubiquitin_specific_peptidase_4,TCAIM->T-cell_activation_inhibitor,_mitochondrial,chr3:44379611-44450943:+	GSU_STOMACH	0.88	0.95	7.9305	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	TIMM23B--LINC00843	56	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.6638	0.2964	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	GSU_STOMACH	0.99	1	0.9602	TRUE	508	994	45	981	0	FALSE	ACH-000485
GSU_STOMACH	MT-TA--MT-TC	55	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.652	0.0593	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GSU_STOMACH	1	1	0.7113	FALSE	462	80	0	856	0	FALSE	ACH-000485
GSU_STOMACH	USP4--TCAIM	3	142	USP4	1789	chr3:49377357:-	TCAIM	37118	chr3:44399233:+	ONLY_REF_SPLICE	YES	38	184	0.79	0.44	0.0356	1.6833	USP4->Oncogene{Bushman},chr3:49315264-49378145:-,ubiquitin_specific_peptidase_4,TCAIM->T-cell_activation_inhibitor,_mitochondrial,chr3:44379611-44450943:+	GSU_STOMACH	0.44	0.79	1.7189	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	SLMAP--FLNB	31	27	SLMAP	7721	chr3:57835543:+	FLNB	62844	chr3:58112329:+	ONLY_REF_SPLICE	YES	101	397	0.36	0.13	0.3675	0.3201	NEIGHBORS[79232],SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B	GSU_STOMACH	0.13	0.36	0.6876	FALSE	0	0	0	1	0	FALSE	ACH-000485
GSU_STOMACH	TIMM23--RP11-464F9.1	34	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	268	9	0.12	0.8	0.403	0.0119	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	GSU_STOMACH	0.12	0.8	0.4149	TRUE	519	3926	326	965	0	FALSE	ACH-000485
GSU_STOMACH	POLRMT--TPGS1	29	18	POLRMT	1764	chr19:632834:-	TPGS1	20505	chr19:518889:+	ONLY_REF_SPLICE	YES	131	73	0.26	0.39	0.3438	0.2134	LOCAL_INVERSION:-:+:[97569],POLRMT->chr19:617223-633597:-,polymerase_(RNA)_mitochondrial,TPGS1->chr19:507299-519654:+,tubulin_polyglutamylase_complex_subunit_1	GSU_STOMACH	0.26	0.39	0.5572	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	CCDC64--CABP1	26	18	CCDC64	1429	chr12:120428101:+	CABP1	24831	chr12:121093896:+	ONLY_REF_SPLICE	YES	65	7	0.4	0.86	0.3082	0.2134	CCDC64->chr12:120427673-120532298:+,CABP1->calcium_binding_protein_1,chr12:121078355-121105127:+	GSU_STOMACH	0.4	0.86	0.5216	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	CCDC64--CABP1	25	12	CCDC64	1429	chr12:120428101:+	CABP1	26913	chr12:121097681:+	ONLY_REF_SPLICE	YES	65	30	0.36	0.55	0.2964	0.1423	CCDC64->chr12:120427673-120532298:+,CABP1->calcium_binding_protein_1,chr12:121078355-121105127:+	GSU_STOMACH	0.36	0.55	0.4387	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	XPO7--RP11-175E9.1	27	0	XPO7	1120	chr8:21777299:+	RP11-175E9.1	36031	chr8:23646006:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3201	0	XPO7->chr8:21777180-21864096:+,exportin_7,RP11-175E9.1->chr8:23564654-23647000:+	GSU_STOMACH	1	1	0.3201	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	OR51S1--TP53I11	25	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2964	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	GSU_STOMACH	1	1	0.2964	TRUE	402	216	10	229	0	FALSE	ACH-000485
GSU_STOMACH	UNC119B--RP11-768F21.1	20	19	UNC119B	3425	chr12:121151190:+	RP11-768F21.1	17233	chr12:119826133:-	ONLY_REF_SPLICE	YES	222	4	0.15	0.91	0.2371	0.2252	UNC119B->chr12:121148238-121161443:+,unc-119_lipid_binding_chaperone_B,RP11-768F21.1->chr12:119825792-120105884:-	GSU_STOMACH	0.15	0.91	0.4623	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	SRP54--RP11-85K15.2	18	19	SRP54	2259	chr14:35452421:+	RP11-85K15.2	25265	chr14:35438513:-	ONLY_REF_SPLICE	YES	582	10	0.06	0.79	0.2134	0.2252	NEIGHBORS_OVERLAP:+:-:[575],SRP54->chr14:35451163-35498773:+,signal_recognition_particle_54kDa,RP11-85K15.2->chr14:35390064-35451738:-	GSU_STOMACH	0.06	0.79	0.4386	FALSE	0	0	0	1	0	FALSE	ACH-000485
GSU_STOMACH	UNC119B--RP11-768F21.1	13	27	UNC119B	3425	chr12:121151190:+	RP11-768F21.1	16117	chr12:119840235:-	ONLY_REF_SPLICE	YES	222	0	0.15	1	0.1541	0.3201	UNC119B->chr12:121148238-121161443:+,unc-119_lipid_binding_chaperone_B,RP11-768F21.1->chr12:119825792-120105884:-	GSU_STOMACH	0.15	1	0.4742	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	ZNF654--HMGB2	19	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2252	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	GSU_STOMACH	1	1	0.2252	TRUE	0	0	0	518	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	17	7	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	21807	0	0	1	0.2015	0.083	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	0	1	0.2845	FALSE	231	217	16	283	0	FALSE	ACH-000485
GSU_STOMACH	PAWR--RP1-78O14.1	14	15	PAWR	14819	chr12:79988109:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	183	0	0.14	1	0.166	0.1778	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	GSU_STOMACH	0.14	1	0.3438	FALSE	0	4	0	4	0	FALSE	ACH-000485
GSU_STOMACH	HSP90AB1--MT-RNR2	15	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4294	0	0	1	0.1778	0.0356	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GSU_STOMACH	0	1	0.2134	FALSE	13	9	0	364	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	14	4	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	14154	10	0	0.64	0.166	0.0474	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	0	0.64	0.2134	FALSE	230	193	14	283	0	FALSE	ACH-000485
GSU_STOMACH	NRIP1--AF127936.7	14	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.166	0.0119	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GSU_STOMACH	1	1	0.1779	FALSE	292	1546	117	613	0	FALSE	ACH-000485
GSU_STOMACH	NIPA2--POLA1	14	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.166	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	GSU_STOMACH	1	1	0.166	TRUE	46	1352	75	139	0	FALSE	ACH-000485
GSU_STOMACH	OSBPL10--RHOA	13	3	OSBPL10	3705	chr3:32022391:-	RHOA	41696	chr3:49413024:-	ONLY_REF_SPLICE	YES	13	348	0.55	0.04	0.1541	0.0356	OSBPL10->chr3:31699382-32119072:-,oxysterol_binding_protein_like_10,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	GSU_STOMACH	0.04	0.55	0.1897	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	MT-ATP6--MT-CO1	11	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1304	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GSU_STOMACH	1	1	0.1304	FALSE	183	104	9	328	0	FALSE	ACH-000485
GSU_STOMACH	ANPEP--MT-ND4L	9	7	ANPEP	16060	chr15:90328379:-	MT-ND4L	19321	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1298	0	0.01	1	0.1067	0.083	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GSU_STOMACH	0.01	1	0.1897	FALSE	0	1	0	16	0	FALSE	ACH-000485
GSU_STOMACH	C15orf57--CBX3	6	19	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	122	43	0.17	0.37	0.0711	0.2252	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	GSU_STOMACH	0.17	0.37	0.2963	TRUE	267	562	48	632	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	8	11	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18170	93	0	0.17	0.0948	0.1304	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	0	0.17	0.2252	FALSE	231	217	16	283	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	8	10	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18813	11	0	0.62	0.0948	0.1185	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	0	0.62	0.2133	FALSE	231	217	16	283	0	FALSE	ACH-000485
GSU_STOMACH	GSR--SCARA3	10	0	GSR	1397	chr8:30585047:-	SCARA3	20984	chr8:27507219:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1185	0	GSR->chr8:30535583-30585443:-,glutathione_reductase,SCARA3->chr8:27491385-27534293:+,scavenger_receptor_class_A_member_3	GSU_STOMACH	1	1	0.1185	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	9	4	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14292	11	0	0.54	0.1067	0.0474	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	0	0.54	0.1541	FALSE	230	198	14	283	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	9	2	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	16516	1885	0	0.01	0.1067	0.0237	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	0	0.01	0.1304	FALSE	231	205	14	283	0	FALSE	ACH-000485
GSU_STOMACH	PLEKHA1--TACC2	6	14	PLEKHA1	6220	chr10:124152857:+	TACC2	53363	chr10:123903087:+	ONLY_REF_SPLICE	YES	129	104	0.13	0.16	0.0711	0.166	PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1,TACC2->chr10:123748689-124014060:+,transforming_acidic_coiled-coil_containing_protein_2	GSU_STOMACH	0.13	0.16	0.2371	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	MT-ATP6--MT-CO1	8	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	12168	27079	0	0	0.0948	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GSU_STOMACH	0	0	0.1067	FALSE	183	104	9	328	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	7	5	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16819	11	0	0.52	0.083	0.0593	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	0	0.52	0.1423	FALSE	231	205	14	283	0	FALSE	ACH-000485
GSU_STOMACH	C15orf57--CBX3	5	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	118	43	0.13	0.28	0.0593	0.1423	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	GSU_STOMACH	0.13	0.28	0.2016	TRUE	267	562	48	632	0	FALSE	ACH-000485
GSU_STOMACH	EIF1--RPS28	8	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0948	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	GSU_STOMACH	1	1	0.0948	TRUE	0	0	0	81	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND1--MT-RNR2	7	4	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	77	0	0.12	1	0.083	0.0474	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GSU_STOMACH	0.12	1	0.1304	FALSE	114	26	4	85	0	FALSE	ACH-000485
GSU_STOMACH	PCBP2--MTND2P28	6	8	PCBP2	11835	chr12:53856343:+	MTND2P28	25766	chr1:565066:+	INCL_NON_REF_SPLICE	YES	3412	0	0	1	0.0711	0.0948	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	GSU_STOMACH	0	1	0.1659	TRUE	0	0	0	9	0	FALSE	ACH-000485
GSU_STOMACH	SRP54--RP11-85K15.2	3	20	SRP54	2259	chr14:35452421:+	RP11-85K15.2	24142	chr14:35441270:-	INCL_NON_REF_SPLICE	YES	582	6	0.04	0.79	0.0356	0.2371	NEIGHBORS_OVERLAP:+:-:[575],SRP54->chr14:35451163-35498773:+,signal_recognition_particle_54kDa,RP11-85K15.2->chr14:35390064-35451738:-	GSU_STOMACH	0.04	0.79	0.2727	FALSE	0	0	0	1	0	FALSE	ACH-000485
GSU_STOMACH	FBXW8--KSR2	7	3	FBXW8	13798	chr12:117466059:+	KSR2	33106	chr12:117977692:-	INCL_NON_REF_SPLICE	YES	187	0	0.05	1	0.083	0.0356	FBXW8->F-box_and_WD_repeat_domain_containing_8,chr12:117348761-117468953:+,KSR2->chr12:117890817-118406788:-,kinase_suppressor_of_ras_2	GSU_STOMACH	0.05	1	0.1186	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	RP11-108K3.1--GLDN	6	7	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	1	0.93	0.93	0.0711	0.083	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	GSU_STOMACH	0.93	0.93	0.1541	FALSE	0	19	0	46	0	FALSE	ACH-000485
GSU_STOMACH	SLMAP--FLNB	1	27	SLMAP	18145	chr3:57882659:+	FLNB	51594	chr3:58092407:+	ONLY_REF_SPLICE	YES	155	364	0.15	0.07	0.0119	0.3201	NEIGHBORS[79232],SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B	GSU_STOMACH	0.07	0.15	0.332	FALSE	0	0	0	1	0	FALSE	ACH-000485
GSU_STOMACH	UNC119B--RP11-768F21.1	5	9	UNC119B	3425	chr12:121151190:+	RP11-768F21.1	17294	chr12:119826072:-	ONLY_REF_SPLICE	YES	222	4	0.06	0.78	0.0593	0.1067	UNC119B->chr12:121148238-121161443:+,unc-119_lipid_binding_chaperone_B,RP11-768F21.1->chr12:119825792-120105884:-	GSU_STOMACH	0.06	0.78	0.166	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	ARHGAP23--CTD-2377D24.6	6	4	ARHGAP23	16504	chr17:36638919:+	CTD-2377D24.6	32043	chr17:46783421:+	ONLY_REF_SPLICE	YES	0	4	1	0.71	0.0711	0.0474	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,CTD-2377D24.6->chr17:46782360-46784708:+	GSU_STOMACH	0.71	1	0.1185	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	CMTM8--CMTM7	7	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.083	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	GSU_STOMACH	1	1	0.083	FALSE	118	557	29	88	0	FALSE	ACH-000485
GSU_STOMACH	SAMD5--SASH1	7	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.083	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	GSU_STOMACH	1	1	0.083	TRUE	53	396	64	110	0	FALSE	ACH-000485
GSU_STOMACH	HSP90AB1--MT-RNR2	6	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4318	0	0	1	0.0711	0.0356	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GSU_STOMACH	0	1	0.1067	FALSE	13	9	0	364	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND6--MT-TE	6	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0711	0.0356	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GSU_STOMACH	1	1	0.1067	FALSE	499	1288	110	792	0	FALSE	ACH-000485
GSU_STOMACH	PCBP2--MTND2P28	5	7	PCBP2	11799	chr12:53856307:+	MTND2P28	25731	chr1:565031:+	INCL_NON_REF_SPLICE	YES	3580	0	0	1	0.0593	0.083	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	GSU_STOMACH	0	1	0.1423	TRUE	0	0	0	9	0	FALSE	ACH-000485
GSU_STOMACH	RP11-120D5.1--MID1	6	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	31	0.64	0.23	0.0711	0.0356	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	GSU_STOMACH	0.23	0.64	0.1067	FALSE	16	356	14	466	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	6	2	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	15161	2013	0	0	0.0711	0.0237	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	0	0	0.0948	FALSE	231	204	14	283	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	3	14	MT-ND4	1843	chrM:11602:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	18650	1	0	0.94	0.0356	0.166	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	0	0.94	0.2016	FALSE	231	217	16	283	0	FALSE	ACH-000485
GSU_STOMACH	PLEKHA1--TACC2	4	10	PLEKHA1	6220	chr10:124152857:+	TACC2	57415	chr10:123954555:+	ONLY_REF_SPLICE	YES	129	97	0.1	0.13	0.0474	0.1185	PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1,TACC2->chr10:123748689-124014060:+,transforming_acidic_coiled-coil_containing_protein_2	GSU_STOMACH	0.1	0.13	0.1659	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	BRI3BP--RP11-116D17.2	3	13	BRI3BP	2407	chr12:125497182:+	RP11-116D17.2	13801	chr12:115708001:+	ONLY_REF_SPLICE	YES	1941	0	0.01	1	0.0356	0.1541	BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,RP11-116D17.2->chr12:115700975-115708401:+	GSU_STOMACH	0.01	1	0.1897	TRUE	0	0	0	1	0	FALSE	ACH-000485
GSU_STOMACH	MT-TA--MT-TC	5	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0593	0.0593	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GSU_STOMACH	1	1	0.1186	FALSE	462	80	0	856	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	4	8	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20354	1	0	0.92	0.0474	0.0948	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	0	0.92	0.1422	FALSE	231	217	16	283	0	FALSE	ACH-000485
GSU_STOMACH	RP11-108K3.1--GLDN	5	4	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	1	1	0.9	0.0593	0.0474	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	GSU_STOMACH	0.9	1	0.1067	FALSE	0	30	1	55	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	4	6	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	18170	1983	0	0.01	0.0474	0.0711	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	0	0.01	0.1185	FALSE	231	217	16	283	0	FALSE	ACH-000485
GSU_STOMACH	MLEC--MT-ND4L	5	1	MLEC	8889	chr12:121138185:+	MT-ND4L	13372	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2617	0	0	1	0.0593	0.0119	MLEC->chr12:121124672-121139667:+,malectin,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GSU_STOMACH	0	1	0.0712	FALSE	0	0	0	1	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	3	9	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	20275	0	0	1	0.0356	0.1067	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	0	1	0.1423	FALSE	231	217	16	283	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	4	5	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	20381	1608	0	0.01	0.0474	0.0593	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	0	0.01	0.1067	FALSE	231	205	14	283	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	3	9	MT-ND4	1478	chrM:11237:+	MT-ATP8	5425	chrM:8412:+	INCL_NON_REF_SPLICE	YES	20438	0	0	1	0.0356	0.1067	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	0	1	0.1423	FALSE	231	217	16	283	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND6--MT-TE	5	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0593	0.0119	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GSU_STOMACH	1	1	0.0712	FALSE	499	1288	110	792	0	FALSE	ACH-000485
GSU_STOMACH	AC009234.1--MT-ND1	5	0	AC009234.1	1210	chr2:50816344:-	MT-ND1	4743	chrM:3323:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0593	0	AC009234.1->chr2:50815828-50816553:-,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	GSU_STOMACH	1	1	0.0593	FALSE	0	0	0	2	0	FALSE	ACH-000485
GSU_STOMACH	MT-CO1--SUMO2	5	0	MT-CO1	1592	chrM:6495:+	SUMO2	5567	chr17:73179054:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0593	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	GSU_STOMACH	1	1	0.0593	FALSE	0	0	0	12	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	4	4	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13952	11	0	0.42	0.0474	0.0474	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	0	0.42	0.0948	FALSE	230	193	14	283	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	3	8	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	18741	1608	0	0.01	0.0356	0.0948	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	0	0.01	0.1304	FALSE	231	217	16	283	0	FALSE	ACH-000485
GSU_STOMACH	FBXW8--KSR2	4	3	FBXW8	13801	chr12:117466062:+	KSR2	33106	chr12:117977692:-	INCL_NON_REF_SPLICE	NO	183	0	0.04	1	0.0474	0.0356	FBXW8->F-box_and_WD_repeat_domain_containing_8,chr12:117348761-117468953:+,KSR2->chr12:117890817-118406788:-,kinase_suppressor_of_ras_2	GSU_STOMACH	0.04	1	0.083	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	MT-ATP6--MT-CO1	4	3	MT-ATP6	1177	chrM:8703:+	MT-CO1	4735	chrM:5957:+	INCL_NON_REF_SPLICE	YES	16388	0	0	1	0.0474	0.0356	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GSU_STOMACH	0	1	0.083	FALSE	182	97	9	327	0	FALSE	ACH-000485
GSU_STOMACH	PAWR--RP1-78O14.1	1	15	PAWR	15902	chr12:79986391:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	NO	161	0	0.09	1	0.0119	0.1778	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	GSU_STOMACH	0.09	1	0.1897	FALSE	3	4	0	12	0	FALSE	ACH-000485
GSU_STOMACH	ADAP1--SUN1	4	2	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	1183	361	0.01	0.02	0.0474	0.0237	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	GSU_STOMACH	0.01	0.02	0.0711	FALSE	16	22	0	27	0	FALSE	ACH-000485
GSU_STOMACH	EIF1--RPS28	4	2	EIF1	1121	chr17:39845257:+	RPS28	8168	chr19:8386425:+	INCL_NON_REF_SPLICE	YES	1220	0	0	1	0.0474	0.0237	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	GSU_STOMACH	0	1	0.0711	FALSE	0	0	0	81	0	FALSE	ACH-000485
GSU_STOMACH	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0474	0.0237	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GSU_STOMACH	0.75	1	0.0711	FALSE	515	4851	409	746	0	FALSE	ACH-000485
GSU_STOMACH	ARHGAP23--CTD-2377D24.8	4	1	ARHGAP23	16504	chr17:36638919:+	CTD-2377D24.8	33118	chr17:46781363:+	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.0474	0.0119	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,CTD-2377D24.8->chr17:46760729-46781844:+	GSU_STOMACH	0.71	1	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	EEF2--EEF1A1	3	5	EEF2	8209	chr19:3978103:-	EEF1A1	17794	chr6:74228439:-	INCL_NON_REF_SPLICE	YES	9127	31709	0	0	0.0356	0.0593	GTEx&tcga_normals:15/3694=0.41%,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	GSU_STOMACH	0	0	0.0949	FALSE	0	0	0	1	0	FALSE	ACH-000485
GSU_STOMACH	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0.0119	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GSU_STOMACH	1	1	0.0593	FALSE	462	80	0	856	0	FALSE	ACH-000485
GSU_STOMACH	EIF1--RPS28	4	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	GSU_STOMACH	1	1	0.0474	TRUE	0	0	0	81	0	FALSE	ACH-000485
GSU_STOMACH	ENO1--H1F0	4	0	ENO1	10842	chr1:8924027:-	H1F0	16841	chr22:38201603:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,H1F0->H1_histone_family_member_0,chr22:38201114-38203442:+	GSU_STOMACH	1	1	0.0474	TRUE	0	0	0	4	0	TRUE	ACH-000485
GSU_STOMACH	FTH1--ACTG1	4	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	GSU_STOMACH	1	1	0.0474	TRUE	0	0	0	64	0	FALSE	ACH-000485
GSU_STOMACH	MT-ATP6--MT-CO1	3	4	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3885	27534	0	0	0.0356	0.0474	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GSU_STOMACH	0	0	0.083	FALSE	183	104	9	328	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	3	4	MT-ND4	1262	chrM:11021:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	15950	0	0	1	0.0356	0.0474	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	0	1	0.083	FALSE	231	205	14	283	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND6--MT-TE	3	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0.0474	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GSU_STOMACH	1	1	0.083	FALSE	499	1288	110	792	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GSU_STOMACH	1	1	0.0474	FALSE	499	1288	110	792	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND1--MT-RNR2	3	3	MT-ND1	1246	chrM:3552:+	MT-RNR2	5019	chrM:1733:+	INCL_NON_REF_SPLICE	YES	73	0	0.08	1	0.0356	0.0356	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GSU_STOMACH	0.08	1	0.0712	FALSE	114	26	4	85	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND6--MT-TE	3	3	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0.0356	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GSU_STOMACH	1	1	0.0712	FALSE	499	1288	110	792	0	FALSE	ACH-000485
GSU_STOMACH	NRIP1--AF127936.7	3	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	30	0	0.17	1	0.0356	0.0356	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GSU_STOMACH	0.17	1	0.0712	FALSE	164	806	69	479	0	FALSE	ACH-000485
GSU_STOMACH	RP11-108K3.1--GLDN	2	7	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	NO	1	2	0.9	0.82	0.0237	0.083	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	GSU_STOMACH	0.82	0.9	0.1067	FALSE	0	14	0	30	0	FALSE	ACH-000485
GSU_STOMACH	RP11-114H23.1--RP11-114H23.2	3	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0.0237	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	GSU_STOMACH	1	1	0.0593	FALSE	81	155	12	160	0	FALSE	ACH-000485
GSU_STOMACH	MT-ATP6--MT-CO1	3	1	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	13955	24446	0	0	0.0356	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GSU_STOMACH	0	0	0.0475	FALSE	183	104	9	328	0	FALSE	ACH-000485
GSU_STOMACH	MT-ATP6--MT-CO1	3	1	MT-ATP6	1133	chrM:8659:+	MT-CO1	5176	chrM:6398:+	INCL_NON_REF_SPLICE	YES	12407	23709	0	0	0.0356	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	GSU_STOMACH	0	0	0.0475	FALSE	183	104	9	328	0	FALSE	ACH-000485
GSU_STOMACH	FTH1--ACTG1	3	0	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	GSU_STOMACH	1	1	0.0356	TRUE	0	0	0	64	0	FALSE	ACH-000485
GSU_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	GSU_STOMACH	1	1	0.0356	FALSE	231	204	14	283	0	FALSE	ACH-000485
GSU_STOMACH	ABHD2--RPLP0	2	3	ABHD2	16581	chr15:89728747:+	RPLP0	31254	chr12:120638900:-	ONLY_REF_SPLICE	NO	2198	2	0	0.71	0.0237	0.0356	ABHD2->Oncogene{Bushman},abhydrolase_domain_containing_2,chr15:89630690-89745591:+,RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0	GSU_STOMACH	0	0.71	0.0593	FALSE	0	0	0	1	0	FALSE	ACH-000485
GSU_STOMACH	UNK--KIAA0195	2	3	UNK	1385	chr17:73781065:+	KIAA0195	26738	chr17:73467881:+	ONLY_REF_SPLICE	YES	106	12	0.05	0.29	0.0237	0.0356	UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,KIAA0195->chr17:73437240-73496171:+	GSU_STOMACH	0.05	0.29	0.0593	TRUE	0	2	0	1	2	TRUE	ACH-000485
GSU_STOMACH	C17orf76-AS1--CKAP5	2	1	C17orf76-AS1	1593	chr17:16342728:+	CKAP5	44059	chr11:46783743:-	ONLY_REF_SPLICE	YES	204	223	0.01	0.01	0.0237	0.0119	C17orf76-AS1->chr17:16342136-16381992:+,CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5	GSU_STOMACH	0.01	0.01	0.0356	FALSE	0	0	0	1	0	FALSE	ACH-000485
GSU_STOMACH	GCLM--STT3B	2	0	GCLM	7532	chr1:94360170:-	STT3B	26880	chr3:31663589:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit,STT3B->STT3B,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr3:31574130-31679112:+	GSU_STOMACH	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	GSU_STOMACH	1	1	0.0237	TRUE	3	14	2	43	0	FALSE	ACH-000485
GSU_STOMACH	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	34770	chr4:1222131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	GSU_STOMACH	1	1	0.0237	TRUE	0	0	0	2	0	FALSE	ACH-000485
GSU_STOMACH	PLEKHA1--TACC2	2	0	PLEKHA1	1111	chr10:124134322:+	TACC2	57415	chr10:123954555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1,TACC2->chr10:123748689-124014060:+,transforming_acidic_coiled-coil_containing_protein_2	GSU_STOMACH	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	RP11-108K3.1--GLDN	1	4	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	3	1	0.62	0.0119	0.0474	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	GSU_STOMACH	0.62	1	0.0593	FALSE	1	20	0	46	0	FALSE	ACH-000485
GSU_STOMACH	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GSU_STOMACH	1	1	0.0237	TRUE	465	1949	224	605	0	FALSE	ACH-000485
GSU_STOMACH	ZNF93--PDHA1	2	0	ZNF93	1179	chr19:20011900:+	PDHA1	24904	chrX:19373467:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	ZNF93->chr19:20011722-20046384:+,zinc_finger_protein_93,PDHA1->chrX:19362011-19379823:+,pyruvate_dehydrogenase_(lipoamide)_alpha_1	GSU_STOMACH	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	MANBA--UBE2D3	1	2	MANBA	1277	chr4:103681875:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	NO	80	960	0.04	0	0.0119	0.0237	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	GSU_STOMACH	0	0.04	0.0356	FALSE	12	9	1	12	0	FALSE	ACH-000485
GSU_STOMACH	NRIP1--AF127936.7	1	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.13	1	0.0119	0.0237	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GSU_STOMACH	0.13	1	0.0356	FALSE	125	705	46	456	0	FALSE	ACH-000485
GSU_STOMACH	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	13663	chr15:51687032:+	ONLY_REF_SPLICE	YES	0	4	1	0.43	0.0119	0.0237	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	GSU_STOMACH	0.43	1	0.0356	FALSE	0	0	0	2	0	FALSE	ACH-000485
GSU_STOMACH	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0119	0.0237	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GSU_STOMACH	0.6	1	0.0356	FALSE	467	2173	244	435	0	FALSE	ACH-000485
GSU_STOMACH	ADAP1--C7orf50	1	1	ADAP1	9672	chr7:959605:-	C7orf50	29696	chr7:1049779:-	ONLY_REF_SPLICE	YES	1183	376	0	0.01	0.0119	0.0119	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_REARRANGEMENT:-:[41579],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	GSU_STOMACH	0	0.01	0.0238	FALSE	0	6	0	10	1	FALSE	ACH-000485
GSU_STOMACH	AP2B1--RP11-1094M14.11	1	1	AP2B1	26012	chr17:34009843:+	RP11-1094M14.11	38584	chr17:33900896:+	ONLY_REF_SPLICE	YES	514	70	0	0.03	0.0119	0.0119	LOCAL_REARRANGEMENT:+:[3254],AP2B1->adaptor_related_protein_complex_2_beta_1_subunit,chr17:33905065-34053436:+,RP11-1094M14.11->chr17:33895139-33901811:+	GSU_STOMACH	0	0.03	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000485
GSU_STOMACH	BFAR--PARN	1	1	BFAR	1204	chr16:14726875:+	PARN	25980	chr16:14698083:-	ONLY_REF_SPLICE	YES	15	94	0.12	0.02	0.0119	0.0119	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:+:-:[87],BFAR->bifunctional_apoptosis_regulator,chr16:14726672-14763093:+,PARN->chr16:14529558-14726585:-,poly(A)-specific_ribonuclease	GSU_STOMACH	0.02	0.12	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000485
GSU_STOMACH	CMTM8--CMTM7	1	1	CMTM8	3732	chr3:32409480:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	NO	257	53	0.01	0.04	0.0119	0.0119	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	GSU_STOMACH	0.01	0.04	0.0238	FALSE	3	14	0	5	0	FALSE	ACH-000485
GSU_STOMACH	FRS2--RAB3IP	1	1	FRS2	1182	chr12:69864310:+	RAB3IP	29411	chr12:70178500:+	ONLY_REF_SPLICE	YES	53	129	0.04	0.02	0.0119	0.0119	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	GSU_STOMACH	0.02	0.04	0.0238	TRUE	0	2	0	1	0	FALSE	ACH-000485
GSU_STOMACH	G2E3--BMP4	1	1	G2E3	1150	chr14:31028478:+	BMP4	34439	chr14:54420118:-	ONLY_REF_SPLICE	NO	19	1582	0.1	0	0.0119	0.0119	G2E3->G2/M-phase_specific_E3_ubiquitin_protein_ligase,chr14:31028329-31089269:+,BMP4->bone_morphogenetic_protein_4,chr14:54416454-54425479:-	GSU_STOMACH	0	0.1	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000485
GSU_STOMACH	HOXB3--ZBTB18	1	1	HOXB3	1433	chr17:46681842:-	ZBTB18	21814	chr1:244217090:+	ONLY_REF_SPLICE	YES	33	3	0.06	0.4	0.0119	0.0119	HOXB3->chr17:46626232-46682274:-,homeobox_B3,ZBTB18->chr1:244214585-244220778:+,zinc_finger_and_BTB_domain_containing_18	GSU_STOMACH	0.06	0.4	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000485
GSU_STOMACH	HOXB6--HN1L	1	1	HOXB6	2278	chr17:46681077:-	HN1L	13785	chr16:1735440:+	ONLY_REF_SPLICE	YES	44	29	0.04	0.06	0.0119	0.0119	HOXB6->chr17:46671639-46682354:-,homeobox_B6,HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like	GSU_STOMACH	0.04	0.06	0.0238	TRUE	0	0	0	1	0	FALSE	ACH-000485
GSU_STOMACH	PHC2--RPLP0	1	1	PHC2	20560	chr1:33794471:-	RPLP0	27038	chr12:120638900:-	ONLY_REF_SPLICE	YES	630	2	0	0.5	0.0119	0.0119	PHC2->chr1:33789224-33896653:-,polyhomeotic_homolog_2,RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0	GSU_STOMACH	0	0.5	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000485
GSU_STOMACH	SMARCA4--DNM2	1	1	SMARCA4	35350	chr19:11145808:+	DNM2	74985	chr19:10930656:+	ONLY_REF_SPLICE	YES	197	667	0.01	0	0.0119	0.0119	YOSHIHARA_TCGA_num_samples[BRCA:2],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,DNM2->chr19:10828755-10944164:+,dynamin_2	GSU_STOMACH	0	0.01	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000485
CORL95_LUNG	PELI2--RP11-718G2.5	122	27	PELI2	3527	chr14:56645182:+	RP11-718G2.5	15944	chr14:70742013:+	ONLY_REF_SPLICE	YES	41	0	0.78	1	1.1381	0.2519	PELI2->chr14:56584532-56768244:+,pellino_E3_ubiquitin_protein_ligase_family_member_2,RP11-718G2.5->chr14:70742013-70758576:+	CORL95_LUNG	0.78	1	1.39	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	ZNF654--HMGB2	113	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0542	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CORL95_LUNG	1	1	1.0542	TRUE	0	0	0	518	0	FALSE	ACH-000743
CORL95_LUNG	SLC8A3--EVL	98	20	SLC8A3	4538	chr14:70633356:-	EVL	27911	chr14:100551024:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	0.9142	0.1866	SLC8A3->chr14:70510934-70655787:-,solute_carrier_family_8_member_A3,EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+	CORL95_LUNG	0.99	1	1.1008	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	LINC01014--KCNMB2	88	9	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	2	120	0.98	0.45	0.8209	0.084	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	CORL95_LUNG	0.45	0.98	0.9049	FALSE	11	60	26	37	0	FALSE	ACH-000743
CORL95_LUNG	TIMM23B--LINC00843	66	10	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6157	0.0933	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CORL95_LUNG	1	1	0.709	TRUE	508	994	45	981	0	FALSE	ACH-000743
CORL95_LUNG	LINC01014--KCNMB2	61	10	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	2	124	0.97	0.36	0.5691	0.0933	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	CORL95_LUNG	0.36	0.97	0.6624	FALSE	12	33	18	33	0	FALSE	ACH-000743
CORL95_LUNG	AP003900.6--AP000345.1	56	2	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	3	0	0.95	1	0.5224	0.0187	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	CORL95_LUNG	0.95	1	0.5411	TRUE	4	17	0	31	0	FALSE	ACH-000743
CORL95_LUNG	KANSL1--ARL17B	42	15	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	50	32	0.53	0.64	0.3918	0.1399	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	CORL95_LUNG	0.53	0.64	0.5317	TRUE	181	1564	124	196	0	FALSE	ACH-000743
CORL95_LUNG	C1orf174--MEGF6	45	2	C1orf174	1122	chr1:3816736:-	MEGF6	12242	chr1:3519164:-	ONLY_REF_SPLICE	YES	5	0	0.9	1	0.4198	0.0187	C1orf174->chr1:3805689-3816857:-,chromosome_1_open_reading_frame_174,MEGF6->chr1:3406484-3528059:-,multiple_EGF_like_domains_6	CORL95_LUNG	0.9	1	0.4385	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	MT-TA--MT-TC	41	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3825	0.0466	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL95_LUNG	1	1	0.4291	FALSE	462	80	0	856	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND4--MT-ND4L	4	140	MT-ND4	1514	chrM:11273:+	MT-ND4L	5446	chrM:10537:+	INCL_NON_REF_SPLICE	YES	186	0	0.44	1	0.0373	1.3061	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	0.44	1	1.3434	FALSE	344	827	44	306	0	FALSE	ACH-000743
CORL95_LUNG	OR51S1--TP53I11	39	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3638	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	CORL95_LUNG	1	1	0.3638	TRUE	402	216	10	229	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND4--MT-ND4L	4	138	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	13	0	0.92	1	0.0373	1.2874	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	0.92	1	1.3247	FALSE	344	826	44	306	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND4--MT-ND4L	3	141	MT-ND4	2041	chrM:11800:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	8159	2	0.02	0.99	0.028	1.3154	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	0.02	0.99	1.3434	FALSE	344	826	44	305	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND4--MT-ND4L	3	136	MT-ND4	1116	chrM:10875:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	10	1	0.93	0.99	0.028	1.2687	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	0.93	0.99	1.2967	FALSE	344	826	44	306	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND6--MT-TE	35	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.3265	0.0373	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL95_LUNG	0.97	1	0.3638	FALSE	499	1288	110	792	0	FALSE	ACH-000743
CORL95_LUNG	TIMM23--RP11-464F9.1	33	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	89	1	0.28	0.97	0.3079	0.0093	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CORL95_LUNG	0.28	0.97	0.3172	TRUE	519	3926	326	965	0	FALSE	ACH-000743
CORL95_LUNG	RP11-120D5.1--MID1	29	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	32	0.85	0.51	0.2705	0.0373	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL95_LUNG	0.51	0.85	0.3078	FALSE	16	356	14	466	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND4--MT-ND4L	6	92	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	1	0.98	0.99	0.056	0.8583	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	0.98	0.99	0.9143	FALSE	344	821	44	306	0	FALSE	ACH-000743
CORL95_LUNG	RP11-123O10.4--GRIP1	23	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	5	1	0.85	0.2146	0.056	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CORL95_LUNG	0.85	1	0.2706	FALSE	416	2512	207	587	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND6--MT-TE	20	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1866	0.0373	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL95_LUNG	0.96	1	0.2239	FALSE	499	1288	110	792	0	FALSE	ACH-000743
CORL95_LUNG	LINC00669--RP11-636O21.1	18	8	LINC00669	1250	chr18:37380033:-	RP11-636O21.1	16093	chr18:37442213:-	ONLY_REF_SPLICE	YES	60	0	0.3	1	0.1679	0.0746	LOCAL_REARRANGEMENT:-:[40856],LINC00669->chr18:36786888-37380282:-,RP11-636O21.1->chr18:37421138-37504804:-	CORL95_LUNG	0.3	1	0.2425	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	MT-ND4--MT-ND4L	3	63	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	11	0	0.86	1	0.028	0.5877	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	0.86	1	0.6157	FALSE	344	826	44	306	0	FALSE	ACH-000743
CORL95_LUNG	AP000525.9--LA16c-60G3.6	17	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1586	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	CORL95_LUNG	1	1	0.1586	TRUE	0	42	0	133	42	FALSE	ACH-000743
CORL95_LUNG	MT-ND6--MT-TE	12	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	23	0	0.51	1	0.1119	0.1119	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL95_LUNG	0.51	1	0.2238	FALSE	499	1288	110	792	0	FALSE	ACH-000743
CORL95_LUNG	SPIRE2--XXbac-B33L19.3	13	7	SPIRE2	3954	chr16:89895202:+	XXbac-B33L19.3	36660	chr22:20350112:+	INCL_NON_REF_SPLICE	YES	9	1	0.69	0.95	0.1213	0.0653	SPIRE2->chr16:89884587-89937727:+,spire_type_actin_nucleation_factor_2,XXbac-B33L19.3->chr22:20326328-20350457:+	CORL95_LUNG	0.69	0.95	0.1866	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	RP11-141M1.3--STARD13	11	13	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1026	0.1213	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	CORL95_LUNG	1	1	0.2239	FALSE	49	120	16	70	0	FALSE	ACH-000743
CORL95_LUNG	RP11-141M1.3--STARD13	11	10	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1026	0.0933	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	CORL95_LUNG	1	1	0.1959	FALSE	141	264	50	91	0	FALSE	ACH-000743
CORL95_LUNG	PELI2--RP11-718G2.5	12	5	PELI2	3527	chr14:56645182:+	RP11-718G2.5	17009	chr14:70758194:+	ONLY_REF_SPLICE	YES	41	0	0.29	1	0.1119	0.0466	PELI2->chr14:56584532-56768244:+,pellino_E3_ubiquitin_protein_ligase_family_member_2,RP11-718G2.5->chr14:70742013-70758576:+	CORL95_LUNG	0.29	1	0.1585	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	MT-ND4--MT-ND4L	7	23	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12	0	0.71	1	0.0653	0.2146	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	0.71	1	0.2799	FALSE	344	826	44	306	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND4--MT-ND4L	3	38	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.3545	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	1	1	0.3825	FALSE	344	821	44	306	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND4--MT-ND4L	4	33	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	11	0	0.77	1	0.0373	0.3079	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	0.77	1	0.3452	FALSE	344	826	44	306	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND4--MT-ND4L	4	33	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	200	0	0.16	1	0.0373	0.3079	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	0.16	1	0.3452	FALSE	344	827	44	306	0	FALSE	ACH-000743
CORL95_LUNG	MT-TA--MT-TC	11	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1026	0.0466	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL95_LUNG	1	1	0.1492	FALSE	462	80	0	856	0	FALSE	ACH-000743
CORL95_LUNG	ZNF654--HMGB2	12	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1119	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CORL95_LUNG	1	1	0.1119	TRUE	0	0	0	518	0	FALSE	ACH-000743
CORL95_LUNG	RP11-444D3.1--SOX5	10	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	3	1	0.81	0.0933	0.028	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CORL95_LUNG	0.81	1	0.1213	TRUE	477	1352	189	275	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND6--MT-TE	6	18	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.056	0.1679	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL95_LUNG	0.96	1	0.2239	FALSE	499	1288	110	792	0	FALSE	ACH-000743
CORL95_LUNG	SPIRE2--XXbac-B33L19.3	8	10	SPIRE2	3954	chr16:89895202:+	XXbac-B33L19.3	36571	chr22:20350023:+	ONLY_REF_SPLICE	YES	9	0	0.67	1	0.0746	0.0933	SPIRE2->chr16:89884587-89937727:+,spire_type_actin_nucleation_factor_2,XXbac-B33L19.3->chr22:20326328-20350457:+	CORL95_LUNG	0.67	1	0.1679	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	MT-ND4--MT-ND4L	3	29	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.028	0.2705	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	0.94	1	0.2985	FALSE	344	821	44	306	0	FALSE	ACH-000743
CORL95_LUNG	CALM3--MT-ATP8	10	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0933	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL95_LUNG	1	1	0.0933	FALSE	12	0	0	26	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND4--MT-ND4L	4	23	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	234	0	0.1	1	0.0373	0.2146	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	0.1	1	0.2519	FALSE	344	827	44	306	0	FALSE	ACH-000743
CORL95_LUNG	C15orf57--CBX3	8	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	30	52	0.32	0.21	0.0746	0.056	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CORL95_LUNG	0.21	0.32	0.1306	TRUE	267	562	48	632	0	FALSE	ACH-000743
CORL95_LUNG	RP11-120D5.1--MID1	8	4	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	7	32	0.63	0.27	0.0746	0.0373	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL95_LUNG	0.27	0.63	0.1119	FALSE	0	9	0	55	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND4--MT-ND4L	3	23	MT-ND4	1303	chrM:11062:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	15	0	0.63	1	0.028	0.2146	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	0.63	1	0.2426	FALSE	344	827	44	306	0	FALSE	ACH-000743
CORL95_LUNG	RP11-120D5.1--MID1	8	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	32	0.65	0.26	0.0746	0.028	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL95_LUNG	0.26	0.65	0.1026	FALSE	0	48	1	163	0	FALSE	ACH-000743
CORL95_LUNG	FGF14-IT1--FGF14	8	2	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	130	1	0.07	0.0746	0.0187	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	CORL95_LUNG	0.07	1	0.0933	TRUE	71	201	23	28	0	FALSE	ACH-000743
CORL95_LUNG	RP11-680G10.1--GSE1	8	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	18	1	0.36	0.0746	0.0187	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CORL95_LUNG	0.36	1	0.0933	TRUE	458	1351	185	561	0	FALSE	ACH-000743
CORL95_LUNG	KLF12--LINC00393	8	1	KLF12	3443	chr13:74518118:-	LINC00393	23241	chr13:74120978:-	ONLY_REF_SPLICE	YES	16	0	0.36	1	0.0746	0.0093	NEIGHBORS[37836],KLF12->Kruppel-like_factor_12,chr13:74260226-74708394:-,LINC00393->chr13:73987610-74222390:-,long_intergenic_non-protein_coding_RNA_393	CORL95_LUNG	0.36	1	0.0839	FALSE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND4--MT-ND4L	3	21	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	13	0	0.65	1	0.028	0.1959	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	0.65	1	0.2239	FALSE	344	826	44	306	0	FALSE	ACH-000743
CORL95_LUNG	RP11-96H19.1--RP11-446N19.1	8	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0746	0.0093	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CORL95_LUNG	0.9	1	0.0839	FALSE	515	4851	409	746	0	FALSE	ACH-000743
CORL95_LUNG	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0746	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL95_LUNG	1	1	0.0746	FALSE	462	80	0	856	0	FALSE	ACH-000743
CORL95_LUNG	MAF--RP11-679B19.2	7	3	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0653	0.028	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	CORL95_LUNG	1	1	0.0933	TRUE	48	25	3	38	0	FALSE	ACH-000743
CORL95_LUNG	RP11-680G10.1--GSE1	7	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	99	1	0.07	0.0653	0.0093	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CORL95_LUNG	0.07	1	0.0746	TRUE	465	1949	224	605	0	FALSE	ACH-000743
CORL95_LUNG	SCARB1--UBC	7	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0653	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	CORL95_LUNG	1	1	0.0653	TRUE	55	66	6	101	0	FALSE	ACH-000743
CORL95_LUNG	CELF4--TPGS2	6	3	CELF4	4414	chr18:35065488:-	TPGS2	25776	chr18:34398936:-	ONLY_REF_SPLICE	YES	119	409	0.07	0.02	0.056	0.028	CELF4->CUGBP,_Elav-like_family_member_4,chr18:34823010-35146000:-,TPGS2->chr18:34359987-34409158:-,tubulin_polyglutamylase_complex_subunit_2	CORL95_LUNG	0.02	0.07	0.084	TRUE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND4--MT-ND4L	4	11	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	13	0	0.54	1	0.0373	0.1026	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	0.54	1	0.1399	FALSE	344	826	44	306	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND6--MT-TE	3	15	MT-ND6	1053	chrM:14621:-	MT-TE	4526	chrM:14742:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.028	0.1399	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL95_LUNG	0.95	1	0.1679	FALSE	499	1288	110	792	0	FALSE	ACH-000743
CORL95_LUNG	FAF1--AGBL4	6	1	FAF1	3708	chr1:51267303:-	AGBL4	31364	chr1:50317190:-	ONLY_REF_SPLICE	YES	99	10	0.07	0.41	0.056	0.0093	{Klijn_CCL:Lung=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	CORL95_LUNG	0.07	0.41	0.0653	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	CALM3--MT-ATP8	6	0	CALM3	8081	chr19:47113583:+	MT-ATP8	11589	chrM:8406:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CORL95_LUNG	1	1	0.056	FALSE	12	0	0	26	0	FALSE	ACH-000743
CORL95_LUNG	DNAJC25--UGCG	6	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.056	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	CORL95_LUNG	1	1	0.056	TRUE	50	73	10	50	0	FALSE	ACH-000743
CORL95_LUNG	FAF1--AGBL4	6	0	FAF1	1497	chr1:51425439:-	AGBL4	43343	chr1:49100276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.056	0	{Klijn_CCL:Lung=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	CORL95_LUNG	1	1	0.056	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	SLC1A5--MT-ND4L	6	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	1	1	0.056	FALSE	0	0	0	189	0	FALSE	ACH-000743
CORL95_LUNG	AP003900.6--AP000345.1	5	3	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	4	0	0.67	1	0.0466	0.028	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	CORL95_LUNG	0.67	1	0.0746	TRUE	0	8	0	37	1	FALSE	ACH-000743
CORL95_LUNG	MT-ND4--MT-ND4L	3	11	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	14	0	0.5	1	0.028	0.1026	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	0.5	1	0.1306	FALSE	344	827	44	306	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND6--MT-TE	5	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0466	0.0093	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL95_LUNG	0.86	1	0.0559	FALSE	499	1288	110	792	0	FALSE	ACH-000743
CORL95_LUNG	RP5-1103G7.4--NRSN2	5	0	RP5-1103G7.4	1125	chr20:328744:-	NRSN2	10343	chr20:329893:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0	NEIGHBORS_OVERLAP:-:+:[1442],RP5-1103G7.4->chr20:300957-328868:-,NRSN2->chr20:327426-340304:+,neurensin_2	CORL95_LUNG	1	1	0.0466	FALSE	0	1	0	2	0	FALSE	ACH-000743
CORL95_LUNG	RP11-444D3.1--SOX5	4	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	3	1	0.7	0.0373	0.028	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CORL95_LUNG	0.7	1	0.0653	TRUE	274	363	69	150	0	FALSE	ACH-000743
CORL95_LUNG	CENPK--ADAMTS6	4	1	CENPK	11986	chr5:64824279:-	ADAMTS6	51466	chr5:64445774:-	INCL_NON_REF_SPLICE	YES	64	1	0.07	0.83	0.0373	0.0093	NEIGHBORS[35846],CENPK->centromere_protein_K,chr5:64813593-64858998:-,ADAMTS6->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_6,chr5:64444563-64777747:-	CORL95_LUNG	0.07	0.83	0.0466	FALSE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND4--MT-ND4L	3	5	MT-ND4	1004	chrM:10763:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.0466	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CORL95_LUNG	1	1	0.0746	FALSE	344	821	44	306	0	FALSE	ACH-000743
CORL95_LUNG	SNX29--U91319.1	4	1	SNX29	22725	chr16:12371893:+	U91319.1	46012	chr16:13656564:+	ONLY_REF_SPLICE	YES	22	0	0.19	1	0.0373	0.0093	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,U91319.1->chr16:13340173-13656775:+	CORL95_LUNG	0.19	1	0.0466	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	ARMC8--CLDN18	4	0	ARMC8	1333	chr3:137906441:+	CLDN18	35357	chr3:137742500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	ARMC8->armadillo_repeat_containing_8,chr3:137906109-138017231:+,CLDN18->chr3:137717577-137752494:+,claudin_18	CORL95_LUNG	1	1	0.0373	TRUE	0	1	0	1	1	TRUE	ACH-000743
CORL95_LUNG	C15orf57--CBX3	3	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	30	54	0.19	0.11	0.028	0.0373	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CORL95_LUNG	0.11	0.19	0.0653	TRUE	267	562	48	632	0	FALSE	ACH-000743
CORL95_LUNG	C1orf174--RP11-46F15.2	4	0	C1orf174	1122	chr1:3816736:-	RP11-46F15.2	12071	chr1:3540120:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	C1orf174->chr1:3805689-3816857:-,chromosome_1_open_reading_frame_174,RP11-46F15.2->chr1:3539754-3541307:-	CORL95_LUNG	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	EVL--SLC8A3	4	0	EVL	1609	chr14:100438394:+	SLC8A3	34711	chr14:70635201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+,SLC8A3->chr14:70510934-70655787:-,solute_carrier_family_8_member_A3	CORL95_LUNG	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1046	chrM:14628:-	MT-TE	4575	chrM:14693:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL95_LUNG	1	1	0.0373	FALSE	499	1288	110	792	0	FALSE	ACH-000743
CORL95_LUNG	RP11-141M1.3--STARD13	2	8	RP11-141M1.3	5599	chr13:34098375:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0187	0.0746	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	CORL95_LUNG	0.83	1	0.0933	FALSE	9	22	2	16	0	FALSE	ACH-000743
CORL95_LUNG	LINC01014--KCNMB2	1	11	LINC01014	2336	chr3:178174562:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	28	124	0.3	0.09	0.0093	0.1026	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	CORL95_LUNG	0.09	0.3	0.1119	FALSE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	NOL12--CHMP1A	3	1	NOL12	27034	chr22:38155271:+	CHMP1A	41725	chr16:89713739:-	ONLY_REF_SPLICE	YES	91	178	0.04	0.02	0.028	0.0093	NOL12->chr22:38077680-38170137:+,nucleolar_protein_12,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	CORL95_LUNG	0.02	0.04	0.0373	TRUE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.028	0.0093	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CORL95_LUNG	0.8	1	0.0373	FALSE	407	2205	196	549	0	FALSE	ACH-000743
CORL95_LUNG	ARID1B--SNX9	3	0	ARID1B	7216	chr6:157222659:+	SNX9	41504	chr6:158288579:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	{Klijn_CCL:Kidney=1},ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+,SNX9->chr6:158244296-158366109:+,sorting_nexin_9	CORL95_LUNG	1	1	0.028	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	MARCH6--NDUFS6	3	0	MARCH6	1215	chr5:10354029:+	NDUFS6	41552	chr5:1814453:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	GTEx_FI:{Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6,NDUFS6->NADH:ubiquinone_oxidoreductase_subunit_S6,chr5:1801514-1816719:+	CORL95_LUNG	1	1	0.028	TRUE	2	1	0	1	0	FALSE	ACH-000743
CORL95_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL95_LUNG	1	1	0.028	FALSE	499	1288	110	792	0	FALSE	ACH-000743
CORL95_LUNG	NPTN--B2M	3	0	NPTN	2010	chr15:73925466:-	B2M	20669	chr15:45007621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:3=pct:1.7]},GTEx_v2:{count=10;pct=0.12%;dist=Whole_Blood=8,Lung=1,Artery_-_Aorta=1},NPTN->chr15:73852355-73926475:-,neuroplastin,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	CORL95_LUNG	1	1	0.028	TRUE	6	0	0	2	0	FALSE	ACH-000743
CORL95_LUNG	RP11-120D5.1--MID1	2	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	6	14	0.5	0.3	0.0187	0.0373	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL95_LUNG	0.3	0.5	0.056	FALSE	0	23	1	67	0	FALSE	ACH-000743
CORL95_LUNG	RP11-319G9.5--WWOX	3	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.028	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	CORL95_LUNG	1	1	0.028	FALSE	154	425	28	76	0	FALSE	ACH-000743
CORL95_LUNG	HYLS1--EI24	2	3	HYLS1	4655	chr11:125761367:+	EI24	15983	chr11:125448029:+	ONLY_REF_SPLICE	YES	62	456	0.07	0.01	0.0187	0.028	HYLS1->chr11:125753509-125770543:+,hydrolethalus_syndrome_1,EI24->EI24,_autophagy_associated_transmembrane_protein,chr11:125439112-125454575:+	CORL95_LUNG	0.01	0.07	0.0467	FALSE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	LINC01014--KCNMB2	2	3	LINC01014	1175	chr3:178137163:+	KCNMB2	14218	chr3:178543376:+	ONLY_REF_SPLICE	YES	2	111	0.71	0.04	0.0187	0.028	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	CORL95_LUNG	0.04	0.71	0.0467	FALSE	0	2	0	4	0	FALSE	ACH-000743
CORL95_LUNG	CTD-2337A12.1--CAST	2	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	15	1	0.21	0.0187	0.0187	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	CORL95_LUNG	0.21	1	0.0374	TRUE	347	1186	183	220	0	FALSE	ACH-000743
CORL95_LUNG	FAF1--AGBL4	2	1	FAF1	8364	chr1:51171458:-	AGBL4	31364	chr1:50317190:-	ONLY_REF_SPLICE	YES	173	10	0.02	0.23	0.0187	0.0093	{Klijn_CCL:Lung=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	CORL95_LUNG	0.02	0.23	0.028	TRUE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	HYLS1--EI24	2	1	HYLS1	3110	chr11:125757660:+	EI24	15983	chr11:125448029:+	ONLY_REF_SPLICE	YES	18	456	0.14	0.01	0.0187	0.0093	HYLS1->chr11:125753509-125770543:+,hydrolethalus_syndrome_1,EI24->EI24,_autophagy_associated_transmembrane_protein,chr11:125439112-125454575:+	CORL95_LUNG	0.01	0.14	0.028	FALSE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	KANSL1--ARL17B	2	1	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	57	32	0.05	0.09	0.0187	0.0093	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	CORL95_LUNG	0.05	0.09	0.028	TRUE	105	90	7	93	0	FALSE	ACH-000743
CORL95_LUNG	LYPD6--AC144449.1	2	1	LYPD6	6579	chr2:150305661:+	AC144449.1	18144	chr2:150600232:+	ONLY_REF_SPLICE	YES	15	0	0.17	1	0.0187	0.0093	GTEx_FI:{Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9]},LYPD6->LY6/PLAUR_domain_containing_6,chr2:150186499-150330662:+,AC144449.1->chr2:150443710-150704747:+	CORL95_LUNG	0.17	1	0.028	TRUE	2	21	0	4	0	FALSE	ACH-000743
CORL95_LUNG	NOC4L--FBRSL1	2	1	NOC4L	2218	chr12:132630210:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	44	31	0.06	0.09	0.0187	0.0093	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	CORL95_LUNG	0.06	0.09	0.028	TRUE	0	1	0	10	0	FALSE	ACH-000743
CORL95_LUNG	TRAPPC9--KCNK9	2	1	TRAPPC9	55504	chr8:140898123:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	YES	72	2	0.04	0.6	0.0187	0.0093	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	CORL95_LUNG	0.04	0.6	0.028	FALSE	7	13	2	16	0	FALSE	ACH-000743
CORL95_LUNG	FYCO1--XCR1	2	0	FYCO1	17756	chr3:45996741:-	XCR1	31796	chr3:46063470:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	LOCAL_REARRANGEMENT:-:[21200],FYCO1->FYVE_and_coiled-coil_domain_containing_1,chr3:45959396-46037316:-,XCR1->X-C_motif_chemokine_receptor_1,chr3:46058516-46069234:-	CORL95_LUNG	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	GMNN--AK7	2	0	GMNN	3326	chr6:24777525:+	AK7	31540	chr14:96953235:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GMNN->chr6:24775159-24786327:+,geminin,_DNA_replication_inhibitor,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	CORL95_LUNG	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	KLF12--LINC00393	2	0	KLF12	2353	chr13:74569127:-	LINC00393	24695	chr13:73987773:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	NEIGHBORS[37836],KLF12->Kruppel-like_factor_12,chr13:74260226-74708394:-,LINC00393->chr13:73987610-74222390:-,long_intergenic_non-protein_coding_RNA_393	CORL95_LUNG	1	1	0.0187	FALSE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	MCCC1--POLR2H	2	0	MCCC1	1602	chr3:182833262:-	POLR2H	33494	chr3:184084505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	MCCC1->chr3:182733006-182833863:-,methylcrotonoyl-CoA_carboxylase_1,POLR2H->chr3:184079506-184086384:+,polymerase_(RNA)_II_subunit_H	CORL95_LUNG	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	RP11-120D5.1--MID1	1	4	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	32	1	0.14	0.0093	0.0373	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL95_LUNG	0.14	1	0.0466	FALSE	2	31	0	60	0	FALSE	ACH-000743
CORL95_LUNG	RP11-162A12.2--CHMP1A	2	0	RP11-162A12.2	1280	chr18:74533972:-	CHMP1A	12073	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	RP11-162A12.2->chr18:74506688-74534251:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	CORL95_LUNG	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	TMEM179B--ANAPC5	2	0	TMEM179B	1113	chr11:62554999:+	ANAPC5	30044	chr12:121747666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	TMEM179B->chr11:62554887-62557877:+,transmembrane_protein_179B,ANAPC5->anaphase_promoting_complex_subunit_5,chr12:121746048-121837699:-	CORL95_LUNG	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	CELF4--TPGS2	1	3	CELF4	4414	chr18:35065488:-	TPGS2	24595	chr18:34401092:-	ONLY_REF_SPLICE	NO	119	451	0.03	0.01	0.0093	0.028	CELF4->CUGBP,_Elav-like_family_member_4,chr18:34823010-35146000:-,TPGS2->chr18:34359987-34409158:-,tubulin_polyglutamylase_complex_subunit_2	CORL95_LUNG	0.01	0.03	0.0373	FALSE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	5	1	0.44	0.0093	0.028	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CORL95_LUNG	0.44	1	0.0373	TRUE	160	277	29	98	0	FALSE	ACH-000743
CORL95_LUNG	MAF--RP11-679B19.2	1	2	MAF	2930	chr16:79632682:-	RP11-679B19.2	13121	chr16:79246798:-	ONLY_REF_SPLICE	YES	36	0	0.08	1	0.0093	0.0187	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	CORL95_LUNG	0.08	1	0.028	TRUE	11	11	0	4	0	FALSE	ACH-000743
CORL95_LUNG	NOC4L--FBRSL1	1	2	NOC4L	2218	chr12:132630210:+	FBRSL1	14520	chr12:133084739:+	ONLY_REF_SPLICE	YES	44	3	0.06	0.5	0.0093	0.0187	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	CORL95_LUNG	0.06	0.5	0.028	TRUE	2	1	0	3	0	FALSE	ACH-000743
CORL95_LUNG	SLC8A3--EVL	1	2	SLC8A3	4538	chr14:70633356:-	EVL	29857	chr14:100563818:+	ONLY_REF_SPLICE	YES	0	125	1	0.02	0.0093	0.0187	SLC8A3->chr14:70510934-70655787:-,solute_carrier_family_8_member_A3,EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+	CORL95_LUNG	0.02	1	0.028	TRUE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	DTNA--NOL4	1	1	DTNA	1225	chr18:32073478:+	NOL4	53667	chr18:31804178:-	ONLY_REF_SPLICE	YES	107	3	0.02	0.4	0.0093	0.0093	DTNA->chr18:32073254-32471808:+,dystrobrevin_alpha,NOL4->chr18:31431064-31804916:-,nucleolar_protein_4	CORL95_LUNG	0.02	0.4	0.0186	TRUE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	EFCAB11--RP11-944C7.1	1	1	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	17	0	0.11	1	0.0093	0.0093	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	CORL95_LUNG	0.11	1	0.0186	TRUE	31	91	1	18	0	FALSE	ACH-000743
CORL95_LUNG	FAF1--AGBL4	1	1	FAF1	1497	chr1:51425439:-	AGBL4	31364	chr1:50317190:-	ONLY_REF_SPLICE	YES	58	10	0.03	0.17	0.0093	0.0093	{Klijn_CCL:Lung=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	CORL95_LUNG	0.03	0.17	0.0186	TRUE	0	0	0	2	0	FALSE	ACH-000743
CORL95_LUNG	FOXP1--PDZRN3	1	1	FOXP1	24443	chr3:71113975:-	PDZRN3	59916	chr3:73453546:-	ONLY_REF_SPLICE	YES	74	37	0.03	0.05	0.0093	0.0093	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,PDZRN3->PDZ_domain_containing_ring_finger_3,chr3:73431584-73674091:-	CORL95_LUNG	0.03	0.05	0.0186	TRUE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	GINS1--PDS5A	1	1	GINS1	3730	chr20:25394490:+	PDS5A	20893	chr4:39929784:-	ONLY_REF_SPLICE	YES	198	103	0.01	0.02	0.0093	0.0093	GINS1->GINS_complex_subunit_1,chr20:25388363-25433264:+,PDS5A->PDS5_cohesin_associated_factor_A,chr4:39824483-39979576:-	CORL95_LUNG	0.01	0.02	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	HNRNPA2B1--UBP1	1	1	HNRNPA2B1	1958	chr7:26240192:-	UBP1	16033	chr3:33481417:-	ONLY_REF_SPLICE	YES	1869	24	0	0.08	0.0093	0.0093	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,UBP1->chr3:33429828-33482863:-,upstream_binding_protein_1_(LBP-1a)	CORL95_LUNG	0	0.08	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	MARCH11--BASP1	1	1	MARCH11	3880	chr5:16177835:-	BASP1	14237	chr5:17275317:+	ONLY_REF_SPLICE	YES	79	485	0.02	0	0.0093	0.0093	MARCH11->chr5:16067248-16180871:-,membrane_associated_ring-CH-type_finger_11,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	CORL95_LUNG	0	0.02	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	NCOR2--UBC	1	1	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	72	46	0.03	0.04	0.0093	0.0093	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	CORL95_LUNG	0.03	0.04	0.0186	TRUE	52	148	13	33	0	FALSE	ACH-000743
CORL95_LUNG	NCOR2--UBC	1	1	NCOR2	12551	chr12:124922476:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	79	46	0.02	0.04	0.0093	0.0093	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	CORL95_LUNG	0.02	0.04	0.0186	TRUE	5	9	1	3	0	FALSE	ACH-000743
CORL95_LUNG	NOC4L--FBRSL1	1	1	NOC4L	2218	chr12:132630210:+	FBRSL1	23658	chr12:133144067:+	ONLY_REF_SPLICE	YES	44	58	0.04	0.03	0.0093	0.0093	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	CORL95_LUNG	0.03	0.04	0.0186	TRUE	2	2	0	6	0	FALSE	ACH-000743
CORL95_LUNG	NOC4L--FBRSL1	1	1	NOC4L	2218	chr12:132630210:+	FBRSL1	21444	chr12:133124589:+	ONLY_REF_SPLICE	YES	44	44	0.04	0.04	0.0093	0.0093	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	CORL95_LUNG	0.04	0.04	0.0186	TRUE	2	1	0	2	0	FALSE	ACH-000743
CORL95_LUNG	NR1H2--TCF4	1	1	NR1H2	1143	chr19:50833052:+	TCF4	23616	chr18:53254367:-	ONLY_REF_SPLICE	NO	1	47	0.67	0.04	0.0093	0.0093	NR1H2->chr19:50832910-50886239:+,nuclear_receptor_subfamily_1_group_H_member_2,TCF4->chr18:52889562-53332018:-,transcription_factor_4	CORL95_LUNG	0.04	0.67	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	PRC1--ING1	1	1	PRC1	2223	chr15:91537637:-	ING1	24621	chr13:111371576:+	ONLY_REF_SPLICE	NO	162	441	0.01	0	0.0093	0.0093	PRC1->chr15:91509270-91538859:-,protein_regulator_of_cytokinesis_1,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	CORL95_LUNG	0	0.01	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	RP11-386G11.10--PEBP1	1	1	RP11-386G11.10	1431	chr12:49521995:+	PEBP1	11961	chr12:118582391:+	ONLY_REF_SPLICE	YES	5609	888	0	0	0.0093	0.0093	RP11-386G11.10->chr12:49521565-49541652:+,PEBP1->Oncogene{Bushman},chr12:118573663-118583389:+,phosphatidylethanolamine_binding_protein_1	CORL95_LUNG	0	0	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	RP11-435B5.4--PHF14	1	1	RP11-435B5.4	2843	chr1:143465380:-	PHF14	44113	chr7:11150977:+	ONLY_REF_SPLICE	YES	3	33	0.4	0.06	0.0093	0.0093	RP11-435B5.4->chr1:143354963-143467632:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	CORL95_LUNG	0.06	0.4	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000743
CORL95_LUNG	SNX4--TMCC1	1	1	SNX4	1166	chr3:125238876:-	TMCC1	33498	chr3:129390107:-	ONLY_REF_SPLICE	YES	137	28	0.01	0.07	0.0093	0.0093	SNX4->chr3:125165495-125239041:-,sorting_nexin_4,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	CORL95_LUNG	0.01	0.07	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000743
CORL95_LUNG	TIMM23--RP11-464F9.1	1	1	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	147	1	0.01	0.67	0.0093	0.0093	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CORL95_LUNG	0.01	0.67	0.0186	FALSE	5	8	0	33	0	FALSE	ACH-000743
CORL95_LUNG	ZFYVE21--KLC1	1	1	ZFYVE21	1250	chr14:104182316:+	KLC1	34861	chr14:104166992:+	ONLY_REF_SPLICE	NO	115	126	0.02	0.02	0.0093	0.0093	GTEx_FI:{Esophagus=[count:4=pct:1.0],Brain=[count:3=pct:0.5],Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Colon=[count:1=pct:0.5],Pituitary=[count:1=pct:1.9],Breast=[count:1=pct:0.9]},GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_REARRANGEMENT:+:[14179],ZFYVE21->chr14:104182067-104200005:+,zinc_finger_FYVE-type_containing_21,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	CORL95_LUNG	0.02	0.02	0.0186	TRUE	10	10	1	10	0	FALSE	ACH-000743
UO31_KIDNEY	TFG--PAK3	30	10	TFG	7331	chr3:100451516:+	PAK3	32506	chrX:110416246:+	ONLY_REF_SPLICE	YES	119	0	0.25	1	0.4216	0.1405	TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,PAK3->ArcherDX_panel,FoundationOne_panel,chrX:110187513-110470589:+,p21_(RAC1)_activated_kinase_3	UO31_KIDNEY	0.25	1	0.5621	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	CAPZA2--GLIPR1	23	4	CAPZA2	3371	chr7:116502704:+	GLIPR1	25667	chr12:75874740:+	INCL_NON_REF_SPLICE	YES	28	171	0.49	0.14	0.3232	0.0562	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,GLIPR1->GLI_pathogenesis_related_1,chr12:75874460-75897633:+	UO31_KIDNEY	0.14	0.49	0.3794	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	TIMM23B--LINC00843	21	8	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2951	0.1124	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	UO31_KIDNEY	1	1	0.4075	TRUE	508	994	45	981	0	FALSE	ACH-000428
UO31_KIDNEY	MT-ND4--MT-ND4L	4	66	MT-ND4	1250	chrM:11009:+	MT-ND4L	5458	chrM:10549:+	INCL_NON_REF_SPLICE	YES	24	0	0.74	1	0.0562	0.9275	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UO31_KIDNEY	0.74	1	0.9837	FALSE	344	827	44	306	0	FALSE	ACH-000428
UO31_KIDNEY	MT-ND4--MT-ND4L	4	66	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	19	0	0.79	1	0.0562	0.9275	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UO31_KIDNEY	0.79	1	0.9837	FALSE	344	827	44	306	0	FALSE	ACH-000428
UO31_KIDNEY	MT-TA--MT-TC	20	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2811	0.0281	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UO31_KIDNEY	1	1	0.3092	FALSE	462	80	0	856	0	FALSE	ACH-000428
UO31_KIDNEY	MT-ND4--MT-ND4L	3	67	MT-ND4	1491	chrM:11250:+	MT-ND4L	5410	chrM:10501:+	INCL_NON_REF_SPLICE	YES	256	0	0.21	1	0.0422	0.9416	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UO31_KIDNEY	0.21	1	0.9838	FALSE	344	827	44	306	0	FALSE	ACH-000428
UO31_KIDNEY	PAK3--TFG	13	7	PAK3	15759	chrX:110406955:+	TFG	40706	chr3:100455420:+	ONLY_REF_SPLICE	YES	0	122	1	0.14	0.1827	0.0984	PAK3->ArcherDX_panel,FoundationOne_panel,chrX:110187513-110470589:+,p21_(RAC1)_activated_kinase_3,TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+	UO31_KIDNEY	0.14	1	0.2811	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	KANSL1--ARL17B	11	4	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	9	9	0.62	0.62	0.1546	0.0562	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	UO31_KIDNEY	0.62	0.62	0.2108	TRUE	181	1564	124	196	0	FALSE	ACH-000428
UO31_KIDNEY	MT-ND4--MT-ND4L	8	10	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	230	0	0.07	1	0.1124	0.1405	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UO31_KIDNEY	0.07	1	0.2529	FALSE	344	827	44	306	0	FALSE	ACH-000428
UO31_KIDNEY	TIMM23--RP11-464F9.1	10	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	100	1	0.1	0.92	0.1405	0.0141	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	UO31_KIDNEY	0.1	0.92	0.1546	TRUE	519	3926	326	965	0	FALSE	ACH-000428
UO31_KIDNEY	MT-ND6--MT-TE	8	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1124	0.0843	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UO31_KIDNEY	0.93	1	0.1967	FALSE	499	1288	110	792	0	FALSE	ACH-000428
UO31_KIDNEY	MT-ND6--MT-ND5	9	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1265	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	UO31_KIDNEY	1	1	0.1265	FALSE	101	855	57	72	0	FALSE	ACH-000428
UO31_KIDNEY	RP11-123O10.4--GRIP1	8	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1124	0.0141	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	UO31_KIDNEY	1	1	0.1265	FALSE	416	2512	207	587	0	FALSE	ACH-000428
UO31_KIDNEY	PAK3--TFG	7	3	PAK3	15078	chrX:110406274:+	TFG	40706	chr3:100455420:+	ONLY_REF_SPLICE	YES	5	122	0.67	0.08	0.0984	0.0422	PAK3->ArcherDX_panel,FoundationOne_panel,chrX:110187513-110470589:+,p21_(RAC1)_activated_kinase_3,TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+	UO31_KIDNEY	0.08	0.67	0.1406	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	MT-ND4--MT-ND4L	4	14	MT-ND4	1024	chrM:10783:+	MT-ND4L	5400	chrM:10491:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0562	0.1967	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UO31_KIDNEY	0.95	1	0.2529	FALSE	344	821	44	306	0	FALSE	ACH-000428
UO31_KIDNEY	MT-ND4--MT-ND4L	3	18	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	325	0	0.06	1	0.0422	0.253	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UO31_KIDNEY	0.06	1	0.2952	FALSE	344	827	44	306	0	FALSE	ACH-000428
UO31_KIDNEY	MT-ND4--MT-ND4L	5	9	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0703	0.1265	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UO31_KIDNEY	0.93	1	0.1968	FALSE	344	821	44	306	0	FALSE	ACH-000428
UO31_KIDNEY	ENO1--PPP3CA	7	0	ENO1	9677	chr1:8925384:-	PPP3CA	25565	chr4:102019607:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0984	0	ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,PPP3CA->chr4:101944566-102269435:-,protein_phosphatase_3_catalytic_subunit_alpha	UO31_KIDNEY	1	1	0.0984	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	CHST11--AACS	5	5	CHST11	2941	chr12:104851292:+	AACS	43061	chr12:125618549:+	ONLY_REF_SPLICE	YES	5	17	0.67	0.37	0.0703	0.0703	CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,AACS->acetoacetyl-CoA_synthetase,chr12:125549925-125627873:+	UO31_KIDNEY	0.37	0.67	0.1406	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	MET--RELN	6	0	MET	1188	chr7:116312631:+	RELN	56154	chr7:103244930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0843	0	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,RELN->chr7:103112231-103629963:-,reelin	UO31_KIDNEY	1	1	0.0843	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0843	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UO31_KIDNEY	1	1	0.0843	FALSE	462	80	0	856	0	FALSE	ACH-000428
UO31_KIDNEY	MT-ND6--MT-ND5	5	0	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	UO31_KIDNEY	1	1	0.0703	FALSE	101	855	57	72	0	FALSE	ACH-000428
UO31_KIDNEY	MYH9--MT2A	5	0	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	UO31_KIDNEY	1	1	0.0703	TRUE	0	0	0	24	0	FALSE	ACH-000428
UO31_KIDNEY	RP11-15B17.1--MT-ATP8	5	0	RP11-15B17.1	1238	chr4:100871400:+	MT-ATP8	12279	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0	RP11-15B17.1->chr4:100871163-101116256:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	UO31_KIDNEY	1	1	0.0703	FALSE	0	0	0	5	0	FALSE	ACH-000428
UO31_KIDNEY	MT-ND4--MT-ND4L	4	3	MT-ND4	1051	chrM:10810:+	MT-ND4L	5622	chrM:10713:+	INCL_NON_REF_SPLICE	NO	1	0	0.88	1	0.0562	0.0422	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	UO31_KIDNEY	0.88	1	0.0984	FALSE	344	821	44	306	0	FALSE	ACH-000428
UO31_KIDNEY	MT-TA--MT-TC	4	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0.0281	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	UO31_KIDNEY	1	1	0.0843	FALSE	462	80	0	856	0	FALSE	ACH-000428
UO31_KIDNEY	MT-ND6--MT-TE	4	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0.0141	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	UO31_KIDNEY	1	1	0.0703	FALSE	499	1288	110	792	0	FALSE	ACH-000428
UO31_KIDNEY	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	UO31_KIDNEY	1	1	0.0562	TRUE	22	156	2	142	0	FALSE	ACH-000428
UO31_KIDNEY	RP11-96H19.1--RP11-446N19.1	4	0	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0562	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	UO31_KIDNEY	1	1	0.0562	FALSE	467	2173	244	435	0	FALSE	ACH-000428
UO31_KIDNEY	FN1--MT-ND5	3	2	FN1	30148	chr2:216251500:-	MT-ND5	55011	chrM:12412:+	INCL_NON_REF_SPLICE	YES	2299	1	0	0.83	0.0422	0.0281	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	UO31_KIDNEY	0	0.83	0.0703	FALSE	0	0	0	1	0	FALSE	ACH-000428
UO31_KIDNEY	ITGA3--MTATP6P1	3	0	ITGA3	21206	chr17:48166643:+	MTATP6P1	25692	chr1:569359:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	ITGA3->chr17:48133332-48167845:+,integrin_subunit_alpha_3,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	UO31_KIDNEY	1	1	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	MT-ND6--MT-ND5	3	0	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	UO31_KIDNEY	1	1	0.0422	FALSE	101	855	57	72	0	FALSE	ACH-000428
UO31_KIDNEY	MT-ND6--MT-ND5	3	0	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	UO31_KIDNEY	1	1	0.0422	FALSE	101	855	57	72	0	FALSE	ACH-000428
UO31_KIDNEY	NDUFA10--MT-ND2	3	0	NDUFA10	12697	chr2:240929543:-	MT-ND2	29622	chrM:5315:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	HGNC_GENEFAM,NDUFA10->NADH:ubiquinone_oxidoreductase_subunit_A10,chr2:240831867-240964819:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	UO31_KIDNEY	1	1	0.0422	FALSE	0	0	0	1	0	FALSE	ACH-000428
UO31_KIDNEY	RP11-96H19.1--RP11-446N19.1	3	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0422	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	UO31_KIDNEY	1	1	0.0422	FALSE	515	4851	409	746	0	FALSE	ACH-000428
UO31_KIDNEY	VIM--RPL8	3	0	VIM	2121	chr10:17271378:+	RPL8	12904	chr8:146017273:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	GTEx&tcga_normals:1/3694=0.03%,VIM->chr10:17270258-17279592:+,vimentin,RPL8->chr8:146015150-146017972:-,ribosomal_protein_L8	UO31_KIDNEY	1	1	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.29	1	0.0281	0.0281	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	UO31_KIDNEY	0.29	1	0.0562	FALSE	164	806	69	479	0	FALSE	ACH-000428
UO31_KIDNEY	TFG--PAK3	1	6	TFG	7331	chr3:100451516:+	PAK3	33570	chrX:110435355:+	ONLY_REF_SPLICE	YES	119	0	0.06	1	0.0141	0.0843	TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,PAK3->ArcherDX_panel,FoundationOne_panel,chrX:110187513-110470589:+,p21_(RAC1)_activated_kinase_3	UO31_KIDNEY	0.06	1	0.0984	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	CHST11--AACS	1	5	CHST11	2956	chr12:104851307:+	AACS	43061	chr12:125618549:+	ONLY_REF_SPLICE	YES	5	17	0.55	0.26	0.0141	0.0703	CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,AACS->acetoacetyl-CoA_synthetase,chr12:125549925-125627873:+	UO31_KIDNEY	0.26	0.55	0.0844	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	ANKHD1--ANKLE2	2	0	ANKHD1	10965	chr5:139844361:+	ANKLE2	66631	chr12:133306856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	HGNC_GENEFAM,ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	DUSP11--PPIB	2	0	DUSP11	1284	chr2:74007001:-	PPIB	15191	chr15:64454353:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	DUSP11->chr2:73989311-74007284:-,dual_specificity_phosphatase_11,PPIB->chr15:64448011-64455404:-,peptidylprolyl_isomerase_B	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	FEM1C--ACTN1	2	0	FEM1C	2945	chr5:114878647:-	ACTN1	17385	chr14:69392389:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	FEM1C->chr5:114856608-114880591:-,fem-1_homolog_C,ACTN1->actinin_alpha_1,chr14:69340860-69446157:-	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	FLVCR1--STX16	2	0	FLVCR1	1936	chr1:213032532:+	STX16	22503	chr20:57242546:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	FLVCR1->chr1:213031597-213072705:+,feline_leukemia_virus_subgroup_C_cellular_receptor_1,STX16->chr20:57226328-57254582:+,syntaxin_16	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	KANSL3--APP	2	0	KANSL3	5947	chr2:97297049:-	APP	49041	chr21:27328069:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	KANSL3->KAT8_regulatory_NSL_complex_subunit_3,chr2:97258907-97308524:-,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	KIF26B--RP11-36N20.1	2	0	KIF26B	24527	chr1:245862339:+	RP11-36N20.1	36594	chr1:246273084:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,RP11-36N20.1->chr1:246271928-246277168:+	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	MOK--ZKSCAN5	2	0	MOK	2354	chr14:102749815:-	ZKSCAN5	35020	chr7:99117450:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	MOK->MOK_protein_kinase,chr14:102690837-102771537:-,ZKSCAN5->chr7:99102274-99132323:+,zinc_finger_with_KRAB_and_SCAN_domains_5	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	NDUFAF2--XPO7	2	0	NDUFAF2	3555	chr5:60369041:+	XPO7	14136	chr8:21824368:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+,XPO7->chr8:21777180-21864096:+,exportin_7	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	UO31_KIDNEY	1	1	0.0281	FALSE	407	2205	196	549	0	FALSE	ACH-000428
UO31_KIDNEY	ZFAS1--UBE2D2	2	0	ZFAS1	2031	chr20:47895745:+	UBE2D2	12006	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	ZIC5--MBNL2	2	0	ZIC5	2783	chr13:100622381:-	MBNL2	17832	chr13:98009736:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	ZIC5->Zic_family_member_5,chr13:100615218-100624163:-,MBNL2->chr13:97873688-98046374:+,muscleblind_like_splicing_regulator_2	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	ZNF254--CDC37	2	0	ZNF254	3406	chr19:24270139:+	CDC37	24919	chr19:10502382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	ZNF254->chr19:24216276-24312654:+,zinc_finger_protein_254,CDC37->cell_division_cycle_37,chr19:10501810-10530797:-	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	ZNF445--LASP1	2	0	ZNF445	1080	chr3:44519083:-	LASP1	27797	chr17:37070578:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	ZNF445->chr3:44481262-44519162:-,zinc_finger_protein_445,LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
UO31_KIDNEY	ZNF783--IPO11	2	0	ZNF783	2583	chr7:148963821:+	IPO11	53242	chr5:61856963:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	ZNF783->chr7:148959262-148994393:+,zinc_finger_family_member_783,IPO11->chr5:61699799-61924409:+,importin_11	UO31_KIDNEY	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000428
CAOV3_OVARY	IGF2R--SYTL3	209	235	IGF2R	8379	chr6:160450687:+	SYTL3	63385	chr6:159134832:+	ONLY_REF_SPLICE	YES	40	1	0.92	1	2.8061	3.1552	{Klijn_CCL:Ovary=1},IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor,SYTL3->chr6:159071046-159185908:+,synaptotagmin_like_3	CAOV3_OVARY	0.92	1	5.9613	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	IGF2R--SYTL3	187	138	IGF2R	8379	chr6:160450687:+	SYTL3	65589	chr6:159146535:+	ONLY_REF_SPLICE	YES	40	92	0.89	0.78	2.5107	1.8528	{Klijn_CCL:Ovary=1},IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor,SYTL3->chr6:159071046-159185908:+,synaptotagmin_like_3	CAOV3_OVARY	0.78	0.89	4.3635	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	SCML2--SH3KBP1	196	102	SCML2	6459	chrX:18338452:-	SH3KBP1	48065	chrX:19564168:-	ONLY_REF_SPLICE	YES	8	127	0.97	0.7	2.6315	1.3695	{Klijn_CCL:Ovary=1},SCML2->chrX:18257434-18372847:-,sex_comb_on_midleg-like_2_(Drosophila),SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-	CAOV3_OVARY	0.7	0.97	4.001	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	CHD3--DNAH2	115	44	CHD3	9855	chr17:7801420:+	DNAH2	80842	chr17:7724561:+	ONLY_REF_SPLICE	YES	31	3	0.84	0.98	1.544	0.5908	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[51062],CHD3->Oncogene{Bushman},chr17:7788124-7816078:+,chromodomain_helicase_DNA_binding_protein_3,DNAH2->chr17:7620672-7737062:+,dynein_axonemal_heavy_chain_2	CAOV3_OVARY	0.84	0.98	2.1348	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	EPHA2--FBXO42	107	55	EPHA2	3978	chr1:16474873:-	FBXO42	25793	chr1:16583254:-	ONLY_REF_SPLICE	YES	176	19	0.48	0.9	1.4366	0.7384	{Klijn_CCL:Lung=1,Ovary=1},LOCAL_REARRANGEMENT:-:[90752],EPHA2->EPH_receptor_A2,Oncogene{Bushman},chr1:16450832-16482582:-,FBXO42->F-box_protein_42,chr1:16573334-16678949:-	CAOV3_OVARY	0.48	0.9	2.175	TRUE	0	1	0	1	1	TRUE	ACH-000713
CAOV3_OVARY	ZFP36L1--ACTN1	111	7	ZFP36L1	1399	chr14:69262792:-	ACTN1	20378	chr14:69378959:-	ONLY_REF_SPLICE	YES	0	491	1	0.19	1.4903	0.094	LOCAL_REARRANGEMENT:-:[77670],ZFP36L1->Oncogene{Bushman},ZFP36_ring_finger_protein-like_1,chr14:69254377-69263190:-,ACTN1->actinin_alpha_1,chr14:69340860-69446157:-	CAOV3_OVARY	0.19	1	1.5843	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	ZFP36L1--ACTN1	88	7	ZFP36L1	1431	chr14:69262760:-	ACTN1	20378	chr14:69378959:-	ONLY_REF_SPLICE	YES	0	491	1	0.16	1.1815	0.094	LOCAL_REARRANGEMENT:-:[77670],ZFP36L1->Oncogene{Bushman},ZFP36_ring_finger_protein-like_1,chr14:69254377-69263190:-,ACTN1->actinin_alpha_1,chr14:69340860-69446157:-	CAOV3_OVARY	0.16	1	1.2755	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	CNOT6--SLC1A3	65	32	CNOT6	4645	chr5:179977117:+	SLC1A3	28832	chr5:36671131:+	ONLY_REF_SPLICE	YES	53	55	0.65	0.64	0.8727	0.4296	CNOT6->CCR4-NOT_transcription_complex_subunit_6,chr5:179921412-180005405:+,SLC1A3->chr5:36606457-36688436:+,solute_carrier_family_1_member_3	CAOV3_OVARY	0.64	0.65	1.3023	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	SPARC--GLRA1	50	41	SPARC	11887	chr5:151045922:-	GLRA1	30011	chr5:151202524:-	ONLY_REF_SPLICE	YES	727	0	0.11	1	0.6713	0.5505	SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,GLRA1->chr5:151202074-151304403:-,glycine_receptor_alpha_1	CAOV3_OVARY	0.11	1	1.2218	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	STX5--WDR74	47	35	STX5	1135	chr11:62599426:-	WDR74	13566	chr11:62607131:-	ONLY_REF_SPLICE	YES	23	33	0.78	0.71	0.631	0.4699	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	CAOV3_OVARY	0.71	0.78	1.1009	TRUE	0	4	0	2	4	TRUE	ACH-000713
CAOV3_OVARY	TIMM23B--LINC00843	45	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6042	0.188	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAOV3_OVARY	1	1	0.7922	TRUE	508	994	45	981	0	FALSE	ACH-000713
CAOV3_OVARY	IGF2R--SYTL3	2	185	IGF2R	8379	chr6:160450687:+	SYTL3	64464	chr6:159139119:+	ONLY_REF_SPLICE	YES	40	1	0.82	0.99	0.0269	2.4839	{Klijn_CCL:Ovary=1},IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor,SYTL3->chr6:159071046-159185908:+,synaptotagmin_like_3	CAOV3_OVARY	0.82	0.99	2.5108	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	IGF2R--SYTL3	11	131	IGF2R	8379	chr6:160450687:+	SYTL3	65592	chr6:159146538:+	INCL_NON_REF_SPLICE	YES	40	91	0.78	0.61	0.1477	1.7588	{Klijn_CCL:Ovary=1},IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor,SYTL3->chr6:159071046-159185908:+,synaptotagmin_like_3	CAOV3_OVARY	0.61	0.78	1.9065	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	KLHL18--RUNX3	36	24	KLHL18	5800	chr3:47364198:+	RUNX3	28954	chr1:25229157:-	ONLY_REF_SPLICE	YES	10	17	0.86	0.78	0.4833	0.3222	KLHL18->chr3:47324407-47388306:+,kelch_like_family_member_18,RUNX3->Oncogene{Bushman},chr1:25226002-25291612:-,runt_related_transcription_factor_3	CAOV3_OVARY	0.78	0.86	0.8055	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	MT-ND6--MT-TE	40	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.537	0.0269	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV3_OVARY	1	1	0.5639	FALSE	499	1288	110	792	0	FALSE	ACH-000713
CAOV3_OVARY	MT-TA--MT-TC	39	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5236	0.0403	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAOV3_OVARY	1	1	0.5639	FALSE	462	80	0	856	0	FALSE	ACH-000713
CAOV3_OVARY	PACSIN1--SRSF3	31	7	PACSIN1	1132	chr6:34434047:+	SRSF3	18687	chr6:36566626:+	ONLY_REF_SPLICE	YES	7	613	0.84	0.06	0.4162	0.094	PACSIN1->chr6:34433916-34503006:+,protein_kinase_C_and_casein_kinase_substrate_in_neurons_1,SRSF3->Oncogene{Bushman},chr6:36562145-36573377:+,serine/arginine-rich_splicing_factor_3	CAOV3_OVARY	0.06	0.84	0.5102	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RAB11FIP3--DECR2	23	36	RAB11FIP3	4291	chr16:521389:+	DECR2	28066	chr16:460209:+	ONLY_REF_SPLICE	YES	26	55	0.69	0.52	0.3088	0.4833	LOCAL_REARRANGEMENT:+:[13132],RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+,DECR2->2,4-dienoyl-CoA_reductase_2,_peroxisomal,chr16:451826-462487:+	CAOV3_OVARY	0.52	0.69	0.7921	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	FBXO22--UBE2Q2	27	17	FBXO22	7073	chr15:76209735:+	UBE2Q2	28291	chr15:76189336:+	ONLY_REF_SPLICE	YES	97	130	0.31	0.25	0.3625	0.2282	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[2781],FBXO22->F-box_protein_22,chr15:76196200-76227609:+,UBE2Q2->chr15:76135622-76193419:+,ubiquitin_conjugating_enzyme_E2_Q2	CAOV3_OVARY	0.25	0.31	0.5907	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	HIST2H2BC--HIST2H4B	25	13	HIST2H2BC	1375	chr1:149821965:-	HIST2H4B	6050	chr1:149831245:-	INCL_NON_REF_SPLICE	YES	6	94	0.86	0.29	0.3357	0.1745	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[3268],HIST2H2BC->chr1:149821760-149822339:-,histone_cluster_2,_H2bc_(pseudogene),HIST2H4B->chr1:149825607-149832714:-,histone_cluster_2,_H4b	CAOV3_OVARY	0.29	0.86	0.5102	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	HIST2H2BD--HIST2H4A	25	13	HIST2H2BD	1374	chr1:149814981:+	HIST2H4A	5974	chr1:149805701:+	INCL_NON_REF_SPLICE	YES	0	94	1	0.29	0.3357	0.1745	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[3269],HIST2H2BD->chr1:149814608-149815100:+,histone_cluster_2,_H2bd_(pseudogene),HIST2H4A->chr1:149804221-149811339:+,histone_cluster_2,_H4a	CAOV3_OVARY	0.29	1	0.5102	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	CREBBP--ADARB1	25	10	CREBBP	3608	chr16:3900298:-	ADARB1	48776	chr21:46548317:+	ONLY_REF_SPLICE	YES	20	3	0.64	0.92	0.3357	0.1343	CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+	CAOV3_OVARY	0.64	0.92	0.47	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	MT-ND6--MT-TE	24	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.3222	0.0671	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV3_OVARY	0.91	1	0.3893	FALSE	499	1288	110	792	0	FALSE	ACH-000713
CAOV3_OVARY	TIMM23--RP11-464F9.1	24	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3222	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAOV3_OVARY	1	1	0.3222	TRUE	519	3926	326	965	0	FALSE	ACH-000713
CAOV3_OVARY	PHLDB1--CD3G	18	20	PHLDB1	38196	chr11:118528168:+	CD3G	42905	chr11:118219742:+	INCL_NON_REF_SPLICE	YES	65	0	0.37	1	0.2417	0.2685	PHLDB1->chr11:118477155-118528741:+,pleckstrin_homology_like_domain_family_B_member_1,CD3G->CD3g_molecule,chr11:118215059-118225876:+	CAOV3_OVARY	0.37	1	0.5102	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	SPARC--GLRA1	10	41	SPARC	11887	chr5:151045922:-	GLRA1	29987	chr5:151202548:-	ONLY_REF_SPLICE	YES	727	0	0.07	1	0.1343	0.5505	SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,GLRA1->chr5:151202074-151304403:-,glycine_receptor_alpha_1	CAOV3_OVARY	0.07	1	0.6848	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	STX5--WDR74	10	40	STX5	1135	chr11:62599426:-	WDR74	13358	chr11:62607339:-	ONLY_REF_SPLICE	YES	23	14	0.68	0.78	0.1343	0.537	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	CAOV3_OVARY	0.68	0.78	0.6713	TRUE	0	4	0	2	4	TRUE	ACH-000713
CAOV3_OVARY	FTH1--ACTG1	17	0	FTH1	3461	chr11:61732261:-	ACTG1	11898	chr17:79478478:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2282	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	CAOV3_OVARY	1	1	0.2282	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	STX5--WDR74	8	36	STX5	1135	chr11:62599426:-	WDR74	13519	chr11:62607178:-	ONLY_REF_SPLICE	YES	23	26	0.66	0.63	0.1074	0.4833	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	CAOV3_OVARY	0.63	0.66	0.5907	TRUE	0	4	0	2	4	TRUE	ACH-000713
CAOV3_OVARY	EPHA2--FBXO42	3	55	EPHA2	6584	chr1:16464348:-	FBXO42	25793	chr1:16583254:-	ONLY_REF_SPLICE	YES	182	19	0.24	0.75	0.0403	0.7384	{Klijn_CCL:Lung=1,Ovary=1},LOCAL_REARRANGEMENT:-:[90752],EPHA2->EPH_receptor_A2,Oncogene{Bushman},chr1:16450832-16482582:-,FBXO42->F-box_protein_42,chr1:16573334-16678949:-	CAOV3_OVARY	0.24	0.75	0.7787	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	YTHDF2--CMAHP	13	14	YTHDF2	7260	chr1:29070498:+	CMAHP	12324	chr6:25166577:-	INCL_NON_REF_SPLICE	YES	119	0	0.18	1	0.1745	0.188	YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+,CMAHP->chr6:25081548-25166793:-,cytidine_monophospho-N-acetylneuraminic_acid_hydroxylase,_pseudogene	CAOV3_OVARY	0.18	1	0.3625	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	SPC24--DOCK6	12	13	SPC24	3674	chr19:11258546:-	DOCK6	43222	chr19:11315007:-	ONLY_REF_SPLICE	YES	39	11	0.39	0.69	0.1611	0.1745	LOCAL_REARRANGEMENT:-:[43487],SPC24->SPC24,_NDC80_kinetochore_complex_component,chr19:11242196-11266484:-,DOCK6->chr19:11309971-11373157:-,dedicator_of_cytokinesis_6	CAOV3_OVARY	0.39	0.69	0.3356	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	FKTN--SLC44A1	15	0	FKTN	1036	chr9:108320446:+	SLC44A1	28846	chr9:108097844:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2014	0	FKTN->chr9:108320411-108403399:+,fukutin,SLC44A1->chr9:108006903-108201452:+,solute_carrier_family_44_member_1	CAOV3_OVARY	1	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	STX5--WDR74	5	39	STX5	2070	chr11:62598491:-	WDR74	13566	chr11:62607131:-	ONLY_REF_SPLICE	YES	63	33	0.41	0.57	0.0671	0.5236	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	CAOV3_OVARY	0.41	0.57	0.5907	TRUE	0	4	0	2	4	TRUE	ACH-000713
CAOV3_OVARY	SCML2--SH3KBP1	1	52	SCML2	6459	chrX:18338452:-	SH3KBP1	49194	chrX:19560311:-	ONLY_REF_SPLICE	NO	8	165	0.87	0.24	0.0134	0.6982	{Klijn_CCL:Ovary=1},SCML2->chrX:18257434-18372847:-,sex_comb_on_midleg-like_2_(Drosophila),SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-	CAOV3_OVARY	0.24	0.87	0.7116	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	APPBP2--RP11-15E18.3	13	2	APPBP2	4696	chr17:58571827:-	RP11-15E18.3	27547	chr17:58639519:-	INCL_NON_REF_SPLICE	YES	73	0	0.17	1	0.1745	0.0269	LOCAL_REARRANGEMENT:-:[35791],APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-,RP11-15E18.3->chr17:58639371-58639522:-	CAOV3_OVARY	0.17	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	HSP90AB1--MT-RNR2	13	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3476	0	0	1	0.1745	0.0134	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAOV3_OVARY	0	1	0.1879	FALSE	13	9	0	364	0	FALSE	ACH-000713
CAOV3_OVARY	RAB11FIP3--DECR2	6	27	RAB11FIP3	4291	chr16:521389:+	DECR2	28100	chr16:460243:+	ONLY_REF_SPLICE	YES	26	52	0.56	0.39	0.0806	0.3625	LOCAL_REARRANGEMENT:+:[13132],RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+,DECR2->2,4-dienoyl-CoA_reductase_2,_peroxisomal,chr16:451826-462487:+	CAOV3_OVARY	0.39	0.56	0.4431	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	STX5--WDR74	1	45	STX5	2070	chr11:62598491:-	WDR74	13358	chr11:62607339:-	ONLY_REF_SPLICE	YES	63	14	0.42	0.77	0.0134	0.6042	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	CAOV3_OVARY	0.42	0.77	0.6176	TRUE	0	4	0	2	4	TRUE	ACH-000713
CAOV3_OVARY	MT-ND6--MT-TE	11	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1477	0.0269	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV3_OVARY	1	1	0.1746	FALSE	499	1288	110	792	0	FALSE	ACH-000713
CAOV3_OVARY	PKN1--CTC-548K16.1	10	5	PKN1	7044	chr19:14557373:+	CTC-548K16.1	21993	chr19:14454238:+	ONLY_REF_SPLICE	YES	259	21	0.05	0.42	0.1343	0.0671	LOCAL_REARRANGEMENT:+:[89140],PKN1->chr19:14543865-14582679:+,protein_kinase_N1,CTC-548K16.1->chr19:14444555-14454725:+	CAOV3_OVARY	0.05	0.42	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	CREBBP--ADARB1	8	12	CREBBP	3608	chr16:3900298:-	ADARB1	46554	chr21:46538479:+	ONLY_REF_SPLICE	YES	20	0	0.5	1	0.1074	0.1611	CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+	CAOV3_OVARY	0.5	1	0.2685	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	YTHDF2--CMAHP	8	10	YTHDF2	7260	chr1:29070498:+	CMAHP	14154	chr6:25138051:-	ONLY_REF_SPLICE	YES	119	3	0.13	0.86	0.1074	0.1343	YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+,CMAHP->chr6:25081548-25166793:-,cytidine_monophospho-N-acetylneuraminic_acid_hydroxylase,_pseudogene	CAOV3_OVARY	0.13	0.86	0.2417	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	MT-ND4--MT-ATP8	10	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	11061	4	0	0.73	0.1343	0.0134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV3_OVARY	0	0.73	0.1477	FALSE	230	193	14	283	0	FALSE	ACH-000713
CAOV3_OVARY	PPP1R26-AS1--GLT6D1	10	0	PPP1R26-AS1	1105	chr9:138372519:-	GLT6D1	12258	chr9:138523324:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1343	0	PPP1R26-AS1->PPP1R26_antisense_RNA_1,chr9:138354573-138372623:-,GLT6D1->chr9:138515502-138531386:-,glycosyltransferase_6_domain_containing_1	CAOV3_OVARY	1	1	0.1343	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	MT-TA--MT-TC	9	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1208	0.0269	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAOV3_OVARY	1	1	0.1477	FALSE	462	80	0	856	0	FALSE	ACH-000713
CAOV3_OVARY	RPS6KB1--VMP1	7	10	RPS6KB1	7326	chr17:57992064:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	46	270	0.27	0.06	0.094	0.1343	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	CAOV3_OVARY	0.06	0.27	0.2283	TRUE	0	8	0	9	5	TRUE	ACH-000713
CAOV3_OVARY	FBXO22--UBE2Q2	5	17	FBXO22	7069	chr15:76209731:+	UBE2Q2	28291	chr15:76189336:+	INCL_NON_REF_SPLICE	YES	96	130	0.19	0.14	0.0671	0.2282	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[2781],FBXO22->F-box_protein_22,chr15:76196200-76227609:+,UBE2Q2->chr15:76135622-76193419:+,ubiquitin_conjugating_enzyme_E2_Q2	CAOV3_OVARY	0.14	0.19	0.2953	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	MTIF2--CCDC88A	9	1	MTIF2	14941	chr2:55467147:-	CCDC88A	51883	chr2:55536390:-	ONLY_REF_SPLICE	YES	60	26	0.14	0.28	0.1208	0.0134	LOCAL_REARRANGEMENT:-:[18495],MTIF2->chr2:55463731-55496483:-,mitochondrial_translational_initiation_factor_2,CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A	CAOV3_OVARY	0.14	0.28	0.1342	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	PHLDB1--CD3G	8	5	PHLDB1	37623	chr11:118527595:+	CD3G	42905	chr11:118219742:+	INCL_NON_REF_SPLICE	YES	41	0	0.24	1	0.1074	0.0671	PHLDB1->chr11:118477155-118528741:+,pleckstrin_homology_like_domain_family_B_member_1,CD3G->CD3g_molecule,chr11:118215059-118225876:+	CAOV3_OVARY	0.24	1	0.1745	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	FTH1--ACTG1	8	1	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	137	2	0.06	0.82	0.1074	0.0134	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	CAOV3_OVARY	0.06	0.82	0.1208	TRUE	0	0	0	64	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ATP6--MT-CO1	8	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	7059	17993	0	0	0.1074	0.0134	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAOV3_OVARY	0	0	0.1208	FALSE	183	104	9	328	0	FALSE	ACH-000713
CAOV3_OVARY	NUBP2--EME2	6	9	NUBP2	4755	chr16:1836656:+	EME2	17070	chr16:1829986:+	INCL_NON_REF_SPLICE	YES	158	48	0.09	0.24	0.0806	0.1208	LOCAL_REARRANGEMENT:+:[1193],NUBP2->chr16:1832902-1839192:+,nucleotide_binding_protein_2,EME2->chr16:1823208-1831709:+,essential_meiotic_structure-specific_endonuclease_subunit_2	CAOV3_OVARY	0.09	0.24	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	PPP1R26-AS1--GLT6D1	8	0	PPP1R26-AS1	1105	chr9:138372519:-	GLT6D1	13306	chr9:138518052:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1074	0	PPP1R26-AS1->PPP1R26_antisense_RNA_1,chr9:138354573-138372623:-,GLT6D1->chr9:138515502-138531386:-,glycosyltransferase_6_domain_containing_1	CAOV3_OVARY	1	1	0.1074	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	DDX6--BCL9L	7	2	DDX6	17612	chr11:118626111:-	BCL9L	26595	chr11:118789588:-	INCL_NON_REF_SPLICE	YES	55	28	0.14	0.24	0.094	0.0269	DDX6->DEAD-box_helicase_6,Oncogene{Bushman},chr11:118620034-118661858:-,BCL9L->B-cell_CLL/lymphoma_9-like,chr11:118764584-118796317:-	CAOV3_OVARY	0.14	0.24	0.1209	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	MT-ND4--MT-ATP8	6	6	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	13191	5	0	0.71	0.0806	0.0806	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV3_OVARY	0	0.71	0.1612	FALSE	231	217	16	283	0	FALSE	ACH-000713
CAOV3_OVARY	MT-CO3--MT-ATP6	7	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.62	1	0.094	0.0134	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAOV3_OVARY	0.62	1	0.1074	FALSE	189	492	56	216	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ND4--MT-ATP8	7	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11061	5	0	0.62	0.094	0.0134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV3_OVARY	0	0.62	0.1074	FALSE	230	193	14	283	0	FALSE	ACH-000713
CAOV3_OVARY	MT-TA--MT-TC	7	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.094	0.0134	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAOV3_OVARY	1	1	0.1074	FALSE	462	80	0	856	0	FALSE	ACH-000713
CAOV3_OVARY	PHLDB1--CD3G	2	20	PHLDB1	38766	chr11:118528738:+	CD3G	42905	chr11:118219742:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0.2685	PHLDB1->chr11:118477155-118528741:+,pleckstrin_homology_like_domain_family_B_member_1,CD3G->CD3g_molecule,chr11:118215059-118225876:+	CAOV3_OVARY	1	1	0.2954	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RP11-32B5.7--RORA	6	4	RP11-32B5.7	1254	chr15:21967898:-	RORA	13265	chr15:60970885:-	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0806	0.0537	RP11-32B5.7->chr15:21941147-21968151:-,RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-	CAOV3_OVARY	0.77	1	0.1343	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RPS6KB1--VMP1	7	0	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.094	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	CAOV3_OVARY	1	1	0.094	TRUE	0	9	0	11	6	TRUE	ACH-000713
CAOV3_OVARY	ZFP36L1--ACTN1	4	11	ZFP36L1	2404	chr14:69261787:-	ACTN1	20378	chr14:69378959:-	INCL_NON_REF_SPLICE	YES	3	491	0.83	0.03	0.0537	0.1477	LOCAL_REARRANGEMENT:-:[77670],ZFP36L1->Oncogene{Bushman},ZFP36_ring_finger_protein-like_1,chr14:69254377-69263190:-,ACTN1->actinin_alpha_1,chr14:69340860-69446157:-	CAOV3_OVARY	0.03	0.83	0.2014	TRUE	0	0	0	1	0	FALSE	ACH-000713
CAOV3_OVARY	FBXO22--UBE2Q2	4	9	FBXO22	7073	chr15:76209735:+	UBE2Q2	29359	chr15:76191768:+	ONLY_REF_SPLICE	YES	97	144	0.12	0.08	0.0537	0.1208	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[2781],FBXO22->F-box_protein_22,chr15:76196200-76227609:+,UBE2Q2->chr15:76135622-76193419:+,ubiquitin_conjugating_enzyme_E2_Q2	CAOV3_OVARY	0.08	0.12	0.1745	TRUE	0	0	0	1	0	FALSE	ACH-000713
CAOV3_OVARY	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3442	0	0	1	0.0806	0.0134	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAOV3_OVARY	0	1	0.094	FALSE	13	9	0	364	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ATP6--MT-CO1	4	9	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2439	18697	0.01	0	0.0537	0.1208	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAOV3_OVARY	0	0.01	0.1745	FALSE	183	104	9	328	0	FALSE	ACH-000713
CAOV3_OVARY	MT-CO3--MT-ATP6	4	9	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	2	0.93	0.87	0.0537	0.1208	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAOV3_OVARY	0.87	0.93	0.1745	FALSE	189	492	56	216	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ND4--MT-ATP8	6	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11193	30	0	0.19	0.0806	0.0134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV3_OVARY	0	0.19	0.094	FALSE	230	198	14	283	0	FALSE	ACH-000713
CAOV3_OVARY	PLEKHA6--PIK3C2B	6	1	PLEKHA6	3218	chr1:204336927:-	PIK3C2B	56341	chr1:204409449:-	ONLY_REF_SPLICE	YES	3	12	0.7	0.37	0.0806	0.0134	LOCAL_REARRANGEMENT:-:[44963],PLEKHA6->chr1:204187979-204346793:-,pleckstrin_homology_domain_containing_A6,PIK3C2B->ArcherDX_panel,FoundationOne_panel,chr1:204391756-204463852:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_beta	CAOV3_OVARY	0.37	0.7	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	CREBBP--ADARB1	3	12	CREBBP	3608	chr16:3900298:-	ADARB1	45448	chr21:46536848:+	ONLY_REF_SPLICE	YES	20	0	0.43	1	0.0403	0.1611	CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+	CAOV3_OVARY	0.43	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RP11-123O10.4--GRIP1	5	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0.0537	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAOV3_OVARY	1	1	0.1208	FALSE	416	2512	207	587	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ND4--MT-ATP8	4	7	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	12979	0	0	1	0.0537	0.094	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV3_OVARY	0	1	0.1477	FALSE	231	217	16	283	0	FALSE	ACH-000713
CAOV3_OVARY	CMSS1--GPR128	5	2	CMSS1	1210	chr3:99536887:+	GPR128	39083	chr3:100387793:+	ONLY_REF_SPLICE	YES	126	0	0.05	1	0.0671	0.0269	CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast),GPR128->chr3:100328433-100414323:+	CAOV3_OVARY	0.05	1	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	FBXL18--ACTB	5	2	FBXL18	1142	chr7:5553288:-	ACTB	21335	chr7:5569294:-	ONLY_REF_SPLICE	YES	21	83	0.25	0.08	0.0671	0.0269	LOCAL_REARRANGEMENT:-:[13353],FBXL18->F-box_and_leucine-rich_repeat_protein_18,chr7:5470966-5553429:-,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	CAOV3_OVARY	0.08	0.25	0.094	TRUE	0	1	0	1	1	TRUE	ACH-000713
CAOV3_OVARY	MT-ND4--MT-ATP8	4	6	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11871	30	0	0.25	0.0537	0.0806	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV3_OVARY	0	0.25	0.1343	FALSE	231	217	16	283	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ND6--MT-TE	4	6	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.71	1	0.0537	0.0806	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV3_OVARY	0.71	1	0.1343	FALSE	499	1288	110	792	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ATP6--MT-CO1	5	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7004	18398	0	0	0.0671	0.0134	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAOV3_OVARY	0	0	0.0805	FALSE	183	104	9	328	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ND4--MT-ATP8	5	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10899	5	0	0.55	0.0671	0.0134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV3_OVARY	0	0.55	0.0805	FALSE	230	193	14	283	0	FALSE	ACH-000713
CAOV3_OVARY	CHD3--DNAH2	1	16	CHD3	9047	chr17:7800612:+	DNAH2	80842	chr17:7724561:+	ONLY_REF_SPLICE	NO	81	3	0.17	0.85	0.0134	0.2148	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[51062],CHD3->Oncogene{Bushman},chr17:7788124-7816078:+,chromodomain_helicase_DNA_binding_protein_3,DNAH2->chr17:7620672-7737062:+,dynein_axonemal_heavy_chain_2	CAOV3_OVARY	0.17	0.85	0.2282	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	CREBBP--ADARB1	2	12	CREBBP	3608	chr16:3900298:-	ADARB1	47610	chr21:46540709:+	ONLY_REF_SPLICE	YES	20	1	0.41	0.93	0.0269	0.1611	CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+	CAOV3_OVARY	0.41	0.93	0.188	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	FKTN--SLC44A1	5	0	FKTN	1036	chr9:108320446:+	SLC44A1	29983	chr9:108110639:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0	FKTN->chr9:108320411-108403399:+,fukutin,SLC44A1->chr9:108006903-108201452:+,solute_carrier_family_44_member_1	CAOV3_OVARY	1	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV3_OVARY	1	1	0.0671	FALSE	499	1288	110	792	0	FALSE	ACH-000713
CAOV3_OVARY	SPC24--DOCK6	3	8	SPC24	3531	chr19:11258689:-	DOCK6	43222	chr19:11315007:-	ONLY_REF_SPLICE	YES	47	11	0.19	0.5	0.0403	0.1074	LOCAL_REARRANGEMENT:-:[43487],SPC24->SPC24,_NDC80_kinetochore_complex_component,chr19:11242196-11266484:-,DOCK6->chr19:11309971-11373157:-,dedicator_of_cytokinesis_6	CAOV3_OVARY	0.19	0.5	0.1477	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	UST--SASH1	5	0	UST	1350	chr6:149068813:+	SASH1	27778	chr6:148835460:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0	UST->chr6:149068464-149398126:+,uronyl_2-sulfotransferase,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	CAOV3_OVARY	1	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	FAM168A--RAB6A	4	3	FAM168A	1267	chr11:73308968:-	RAB6A	29632	chr11:73390765:-	ONLY_REF_SPLICE	YES	46	211	0.13	0.03	0.0537	0.0403	LOCAL_REARRANGEMENT:-:[77449],FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A,RAB6A->RAB6A,_member_RAS_oncogene_family,chr11:73386683-73472182:-	CAOV3_OVARY	0.03	0.13	0.094	TRUE	0	1	0	2	1	FALSE	ACH-000713
CAOV3_OVARY	MT-CO3--MT-ATP6	4	3	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	4	0	0.64	1	0.0537	0.0403	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAOV3_OVARY	0.64	1	0.094	FALSE	189	492	56	216	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ND4--MT-ATP8	3	6	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12329	30	0	0.23	0.0403	0.0806	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV3_OVARY	0	0.23	0.1209	FALSE	231	217	16	283	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ND4--MT-ATP8	3	6	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2021	30	0	0.23	0.0403	0.0806	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV3_OVARY	0	0.23	0.1209	FALSE	216	209	16	281	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ND6--MT-TE	3	6	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.0403	0.0806	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV3_OVARY	0.69	1	0.1209	FALSE	499	1288	110	792	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ATP6--MT-CO1	3	5	MT-ATP6	1400	chrM:8926:+	MT-CO1	5381	chrM:6603:+	INCL_NON_REF_SPLICE	YES	8834	17970	0	0	0.0403	0.0671	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAOV3_OVARY	0	0	0.1074	FALSE	183	104	9	328	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ND6--MT-TE	3	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0.0671	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV3_OVARY	1	1	0.1074	FALSE	499	1288	110	792	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ND6--MT-TE	4	1	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0.0134	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV3_OVARY	1	1	0.0671	FALSE	499	1288	110	792	0	FALSE	ACH-000713
CAOV3_OVARY	MT-TA--MT-TC	3	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0.0671	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAOV3_OVARY	1	1	0.1074	FALSE	462	80	0	856	0	FALSE	ACH-000713
CAOV3_OVARY	EMC1--CAPZB	4	0	EMC1	1138	chr1:19577909:-	CAPZB	37343	chr1:19684057:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0537	0	LOCAL_REARRANGEMENT:-:[87221],EMC1->ER_membrane_protein_complex_subunit_1,chr1:19542158-19578046:-,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	CAOV3_OVARY	1	1	0.0537	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	FTH1--ACTG1	4	0	FTH1	1187	chr11:61734946:-	ACTG1	10556	chr17:79479820:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	CAOV3_OVARY	1	1	0.0537	TRUE	0	0	0	64	0	FALSE	ACH-000713
CAOV3_OVARY	LINC01036--LINC01037	4	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0537	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	CAOV3_OVARY	1	1	0.0537	FALSE	0	24	0	62	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	13056	690	0	0.01	0.0403	0.0537	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV3_OVARY	0	0.01	0.094	FALSE	231	217	16	283	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV3_OVARY	1	1	0.0537	FALSE	499	1288	110	792	0	FALSE	ACH-000713
CAOV3_OVARY	PTP4A1--MT2A	4	0	PTP4A1	3933	chr6:64282517:+	MT2A	16021	chr16:56642496:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0	PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1,MT2A->chr16:56642111-56643409:+,metallothionein_2A	CAOV3_OVARY	1	1	0.0537	TRUE	0	0	0	2	0	TRUE	ACH-000713
CAOV3_OVARY	DENND5B--PIGT	3	3	DENND5B	20629	chr12:31566370:-	PIGT	38992	chr20:44047492:+	ONLY_REF_SPLICE	NO	8	252	0.43	0.02	0.0403	0.0403	{Klijn_CCL:Ovary=1},DENND5B->DENN_domain_containing_5B,chr12:31535157-31744031:-,PIGT->chr20:44044717-44054884:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_T	CAOV3_OVARY	0.02	0.43	0.0806	TRUE	0	0	0	1	0	FALSE	ACH-000713
CAOV3_OVARY	GPR128--CMSS1	3	3	GPR128	16645	chr3:100387949:+	CMSS1	31865	chr3:99865817:+	ONLY_REF_SPLICE	YES	0	140	1	0.04	0.0403	0.0403	GPR128->chr3:100328433-100414323:+,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	CAOV3_OVARY	0.04	1	0.0806	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	MT-CO3--MT-ATP6	3	3	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0403	0.0403	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAOV3_OVARY	0.86	1	0.0806	FALSE	189	492	56	216	0	FALSE	ACH-000713
CAOV3_OVARY	MT-TA--MT-TC	3	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0.0269	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAOV3_OVARY	1	1	0.0672	FALSE	462	80	0	856	0	FALSE	ACH-000713
CAOV3_OVARY	MT-TA--MT-TC	3	2	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0.0269	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAOV3_OVARY	1	1	0.0672	FALSE	462	80	0	856	0	FALSE	ACH-000713
CAOV3_OVARY	RPS6KB1--VMP1	1	10	RPS6KB1	13255	chr17:58012661:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	56	202	0.16	0.05	0.0134	0.1343	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	CAOV3_OVARY	0.05	0.16	0.1477	TRUE	0	1	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	FTH1--ACTG1	3	1	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	133	2	0.03	0.67	0.0403	0.0134	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	CAOV3_OVARY	0.03	0.67	0.0537	TRUE	0	0	0	64	0	FALSE	ACH-000713
CAOV3_OVARY	MT-CO3--MT-ATP6	3	1	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0403	0.0134	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAOV3_OVARY	0.8	1	0.0537	FALSE	189	492	56	216	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	14702	0	0	1	0.0403	0.0134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV3_OVARY	0	1	0.0537	FALSE	231	217	16	283	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12989	5	0	0.44	0.0403	0.0134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV3_OVARY	0	0.44	0.0537	FALSE	231	205	14	283	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1294	chrM:11053:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	13823	2	0	0.67	0.0403	0.0134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV3_OVARY	0	0.67	0.0537	FALSE	231	205	14	283	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14331	30	0	0.12	0.0403	0.0134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV3_OVARY	0	0.12	0.0537	FALSE	231	205	14	283	0	FALSE	ACH-000713
CAOV3_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15224	30	0	0.12	0.0403	0.0134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAOV3_OVARY	0	0.12	0.0537	FALSE	231	217	16	283	0	FALSE	ACH-000713
CAOV3_OVARY	TPX2--HM13	3	1	TPX2	2458	chr20:30330450:+	HM13	39970	chr20:30154013:+	ONLY_REF_SPLICE	YES	193	720	0.02	0.01	0.0403	0.0134	TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	CAOV3_OVARY	0.01	0.02	0.0537	FALSE	0	1	0	1	1	FALSE	ACH-000713
CAOV3_OVARY	ASS1--MT-CO3	3	0	ASS1	7359	chr9:133339534:+	MT-CO3	21796	chrM:9549:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	ASS1->argininosuccinate_synthase_1,chr9:133320316-133376661:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAOV3_OVARY	1	1	0.0403	FALSE	0	0	0	12	0	FALSE	ACH-000713
CAOV3_OVARY	BCL2L1--MT-ND4L	3	0	BCL2L1	4522	chr20:30253703:-	MT-ND4L	9219	chrM:10718:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAOV3_OVARY	1	1	0.0403	FALSE	0	0	0	1	0	FALSE	ACH-000713
CAOV3_OVARY	FTH1--GSTP1	3	0	FTH1	1229	chr11:61734904:-	GSTP1	8716	chr11:67351606:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1	CAOV3_OVARY	1	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	FTH1--GSTP1	3	0	FTH1	1174	chr11:61734959:-	GSTP1	8403	chr11:67351293:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1	CAOV3_OVARY	1	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAOV3_OVARY	1	1	0.0403	FALSE	499	1288	110	792	0	FALSE	ACH-000713
CAOV3_OVARY	SLC1A5--MT-ND4L	3	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAOV3_OVARY	1	1	0.0403	FALSE	0	0	0	189	0	FALSE	ACH-000713
CAOV3_OVARY	DENND5B--PIGT	2	3	DENND5B	20629	chr12:31566370:-	PIGT	39435	chr20:44047935:+	ONLY_REF_SPLICE	YES	8	245	0.38	0.02	0.0269	0.0403	{Klijn_CCL:Ovary=1},DENND5B->DENN_domain_containing_5B,chr12:31535157-31744031:-,PIGT->chr20:44044717-44054884:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_T	CAOV3_OVARY	0.02	0.38	0.0672	TRUE	0	0	0	1	0	FALSE	ACH-000713
CAOV3_OVARY	STX5--WDR74	2	3	STX5	2070	chr11:62598491:-	WDR74	15947	chr11:62603313:-	ONLY_REF_SPLICE	YES	63	325	0.07	0.02	0.0269	0.0403	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[254],STX5->chr11:62574369-62599560:-,syntaxin_5,WDR74->WD_repeat_domain_74,chr11:62599814-62609281:-	CAOV3_OVARY	0.02	0.07	0.0672	TRUE	0	0	0	1	0	FALSE	ACH-000713
CAOV3_OVARY	WBP1L--SFXN2	2	3	WBP1L	1174	chr10:104503900:+	SFXN2	17695	chr10:104486369:+	ONLY_REF_SPLICE	YES	56	5	0.08	0.5	0.0269	0.0403	LOCAL_REARRANGEMENT:+:[478],WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+,SFXN2->chr10:104474295-104503249:+,sideroflexin_2	CAOV3_OVARY	0.08	0.5	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RPS6KB1--VMP1	1	6	RPS6KB1	5427	chr17:57990165:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	59	270	0.11	0.03	0.0134	0.0806	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	CAOV3_OVARY	0.03	0.11	0.094	TRUE	0	5	0	6	5	TRUE	ACH-000713
CAOV3_OVARY	TRIM55--DNAJC5B	2	2	TRIM55	2581	chr8:67040711:+	DNAJC5B	16544	chr8:66955723:+	ONLY_REF_SPLICE	NO	4	0	0.5	1	0.0269	0.0269	LOCAL_REARRANGEMENT:+:[26380],TRIM55->chr8:67039131-67087720:+,tripartite_motif_containing_55,DNAJC5B->DnaJ_heat_shock_protein_family_(Hsp40)_member_C5_beta,chr8:66933795-67012751:+	CAOV3_OVARY	0.5	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	PACSIN1--SRSF3	1	5	PACSIN1	1132	chr6:34434047:+	SRSF3	20990	chr6:36568929:+	ONLY_REF_SPLICE	YES	7	690	0.46	0.01	0.0134	0.0671	PACSIN1->chr6:34433916-34503006:+,protein_kinase_C_and_casein_kinase_substrate_in_neurons_1,SRSF3->Oncogene{Bushman},chr6:36562145-36573377:+,serine/arginine-rich_splicing_factor_3	CAOV3_OVARY	0.01	0.46	0.0805	FALSE	0	0	0	1	0	FALSE	ACH-000713
CAOV3_OVARY	PRKCH--MNAT1	2	1	PRKCH	6593	chr14:61789479:+	MNAT1	44839	chr14:61262935:+	ONLY_REF_SPLICE	YES	11	159	0.21	0.02	0.0269	0.0134	PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta,MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+	CAOV3_OVARY	0.02	0.21	0.0403	TRUE	0	0	0	1	0	FALSE	ACH-000713
CAOV3_OVARY	RCN3--RPS11	2	1	RCN3	6734	chr19:50046009:+	RPS11	12592	chr19:50000451:+	ONLY_REF_SPLICE	YES	139	13	0.02	0.19	0.0269	0.0134	LOCAL_REARRANGEMENT:+:[27929],RCN3->chr19:50030875-50050219:+,reticulocalbin_3,RPS11->chr19:49999622-50002946:+,ribosomal_protein_S11	CAOV3_OVARY	0.02	0.19	0.0403	TRUE	0	0	0	1	0	FALSE	ACH-000713
CAOV3_OVARY	RPS6KB1--VMP1	1	5	RPS6KB1	7326	chr17:57992064:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	46	292	0.12	0.02	0.0134	0.0671	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	CAOV3_OVARY	0.02	0.12	0.0805	TRUE	0	4	1	7	3	TRUE	ACH-000713
CAOV3_OVARY	SCARB1--UBC	2	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	21	91	0.12	0.03	0.0269	0.0134	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	CAOV3_OVARY	0.03	0.12	0.0403	TRUE	55	66	6	101	0	FALSE	ACH-000713
CAOV3_OVARY	AGRN--GNAS	2	0	AGRN	4732	chr1:970704:+	GNAS	39945	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	AGRN->agrin,chr1:955503-991496:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	BMPER--DPY19L2P1	2	0	BMPER	5273	chr7:33977000:+	DPY19L2P1	52291	chr7:35131558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	BMPER->BMP_binding_endothelial_regulator,chr7:33944523-34195484:+,DPY19L2P1->DPY19L2_pseudogene_1,chr7:35119601-35225934:-	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	CAMTA1--LAMA3	2	0	CAMTA1	4547	chr1:6885270:+	LAMA3	113002	chr18:21523752:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+,LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	CHD3--DNAH2	1	4	CHD3	9047	chr17:7800612:+	DNAH2	81969	chr17:7726760:+	ONLY_REF_SPLICE	NO	81	42	0.06	0.11	0.0134	0.0537	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[51062],CHD3->Oncogene{Bushman},chr17:7788124-7816078:+,chromodomain_helicase_DNA_binding_protein_3,DNAH2->chr17:7620672-7737062:+,dynein_axonemal_heavy_chain_2	CAOV3_OVARY	0.06	0.11	0.0671	TRUE	0	0	0	1	0	FALSE	ACH-000713
CAOV3_OVARY	CREBBP--ADARB1	2	0	CREBBP	1895	chr16:3929833:-	ADARB1	48776	chr21:46548317:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	DIDO1--ARPP19	2	0	DIDO1	1157	chr20:61569148:-	ARPP19	33226	chr15:52849419:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,ARPP19->cAMP_regulated_phosphoprotein_19kDa,chr15:52839242-52862080:-	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	DMXL1--HSD17B4	2	0	DMXL1	17360	chr5:118465118:+	HSD17B4	74871	chr5:118832238:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	DMXL1->Dmx_like_1,chr5:118373467-118584833:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	EP300--SP1	2	0	EP300	2313	chr22:41489102:+	SP1	44349	chr12:53800369:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	GXYLT1--PPHLN1	2	0	GXYLT1	1454	chr12:42538228:-	PPHLN1	31205	chr12:42768665:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Cells_-_Transformed_fibroblasts=1},{Klijn_CCL:Breast=2},LOCAL_INVERSION:-:+:[93568],GXYLT1->chr12:42475647-42538681:-,glucoside_xylosyltransferase_1,PPHLN1->chr12:42632249-42853517:+,periphilin_1	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	LYPD6B--ORC4	2	0	LYPD6B	7317	chr2:149987467:+	ORC4	41822	chr2:148693267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	LYPD6B->LY6/PLAUR_domain_containing_6B,chr2:149894621-150071776:+,ORC4->chr2:148687968-148779147:-,origin_recognition_complex_subunit_4	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAOV3_OVARY	1	1	0.0269	FALSE	292	1546	117	613	0	FALSE	ACH-000713
CAOV3_OVARY	RBM25--CEP128	1	4	RBM25	5737	chr14:73543076:+	CEP128	63115	chr14:80971363:-	ONLY_REF_SPLICE	YES	88	10	0.05	0.33	0.0134	0.0537	RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+,CEP128->centrosomal_protein_128,chr14:80943330-81425861:-	CAOV3_OVARY	0.05	0.33	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RP11-363E6.3--SCYL2	2	0	RP11-363E6.3	1114	chr8:82193568:-	SCYL2	7230	chr12:100676721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	RP11-363E6.3->chr8:82192106-82193681:-,SCYL2->SCY1_like_pseudokinase_2,chr12:100660918-100735502:+	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAOV3_OVARY	1	1	0.0269	TRUE	465	1949	224	605	0	FALSE	ACH-000713
CAOV3_OVARY	TFCP2L1--RALB	2	0	TFCP2L1	2312	chr2:122038696:-	RALB	28634	chr2:121036191:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	TFCP2L1->chr2:121974163-122042783:-,transcription_factor_CP2-like_1,RALB->Oncogene{Bushman},chr2:120997640-121052289:+,v-ral_simian_leukemia_viral_oncogene_homolog_B	CAOV3_OVARY	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	BCAR3--GCLM	1	1	BCAR3	11906	chr1:94107860:-	GCLM	30973	chr1:94370144:-	ONLY_REF_SPLICE	NO	95	21	0.02	0.09	0.0134	0.0134	LOCAL_REARRANGEMENT:-:[38055],BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit	CAOV3_OVARY	0.02	0.09	0.0268	TRUE	0	0	0	1	0	FALSE	ACH-000713
CAOV3_OVARY	DDX6--BCL9L	1	1	DDX6	17612	chr11:118626111:-	BCL9L	30029	chr11:118779364:-	ONLY_REF_SPLICE	YES	55	53	0.04	0.04	0.0134	0.0134	DDX6->DEAD-box_helicase_6,Oncogene{Bushman},chr11:118620034-118661858:-,BCL9L->B-cell_CLL/lymphoma_9-like,chr11:118764584-118796317:-	CAOV3_OVARY	0.04	0.04	0.0268	TRUE	0	0	0	1	0	FALSE	ACH-000713
CAOV3_OVARY	DDX6--BCL9L	1	1	DDX6	17612	chr11:118626111:-	BCL9L	28927	chr11:118780724:-	ONLY_REF_SPLICE	YES	55	36	0.04	0.05	0.0134	0.0134	DDX6->DEAD-box_helicase_6,Oncogene{Bushman},chr11:118620034-118661858:-,BCL9L->B-cell_CLL/lymphoma_9-like,chr11:118764584-118796317:-	CAOV3_OVARY	0.04	0.05	0.0268	TRUE	0	0	0	1	0	FALSE	ACH-000713
CAOV3_OVARY	NCOR2--AACS	1	1	NCOR2	27742	chr12:124856568:-	AACS	73214	chr12:125591667:+	ONLY_REF_SPLICE	YES	111	104	0.02	0.02	0.0134	0.0134	NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,AACS->acetoacetyl-CoA_synthetase,chr12:125549925-125627873:+	CAOV3_OVARY	0.02	0.02	0.0268	TRUE	0	0	0	1	0	FALSE	ACH-000713
CAOV3_OVARY	PHLDB1--CD3G	1	1	PHLDB1	31280	chr11:118521252:+	CD3G	42905	chr11:118219742:+	ONLY_REF_SPLICE	NO	55	0	0.04	1	0.0134	0.0134	PHLDB1->chr11:118477155-118528741:+,pleckstrin_homology_like_domain_family_B_member_1,CD3G->CD3g_molecule,chr11:118215059-118225876:+	CAOV3_OVARY	0.04	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000713
CAOV3_OVARY	RNF4--RP11-503N18.1	1	1	RNF4	11417	chr4:2498848:+	RP11-503N18.1	28884	chr4:2438601:+	ONLY_REF_SPLICE	YES	206	0	0.01	1	0.0134	0.0134	LOCAL_REARRANGEMENT:+:[11860],RNF4->chr4:2463947-2627047:+,ring_finger_protein_4,RP11-503N18.1->chr4:2420701-2452087:+	CAOV3_OVARY	0.01	1	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000713
CAOV3_OVARY	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0134	0.0134	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAOV3_OVARY	1	1	0.0268	FALSE	407	2205	196	549	0	FALSE	ACH-000713
CAOV3_OVARY	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0134	0.0134	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAOV3_OVARY	1	1	0.0268	FALSE	515	4851	409	746	0	FALSE	ACH-000713
CAOV3_OVARY	SPOCK2--CAPN2	1	1	SPOCK2	6543	chr10:73830070:-	CAPN2	33977	chr1:223946972:+	ONLY_REF_SPLICE	NO	2533	264	0	0.01	0.0134	0.0134	SPOCK2->chr10:73818793-73848790:-,sparc/osteonectin,_cwcv_and_kazal-like_domains_proteoglycan_(testican)_2,CAPN2->calpain_2,chr1:223889295-223963720:+	CAOV3_OVARY	0	0.01	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000713
HT29_LARGE_INTESTINE	USP6NL--UPF2	98	94	USP6NL	2399	chr10:11639630:-	UPF2	49252	chr10:11998522:-	ONLY_REF_SPLICE	YES	37	52	0.84	0.79	1.7653	1.6933	USP6NL->USP6_N-terminal_like,chr10:11495945-11653753:-,UPF2->UPF2_regulator_of_nonsense_transcripts_homolog_(yeast),chr10:11962021-12085169:-	HT29_LARGE_INTESTINE	0.79	0.84	3.4586	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	MTMR3--APOH	86	112	MTMR3	1205	chr22:30279348:+	APOH	32631	chr17:64252645:-	INCL_NON_REF_SPLICE	YES	12	0	0.94	1	1.5492	2.0175	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,APOH->apolipoprotein_H,chr17:64208151-64252643:-	HT29_LARGE_INTESTINE	0.94	1	3.5667	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	MTMR3--APOH	87	79	MTMR3	1205	chr22:30279348:+	APOH	33753	chr17:64225540:-	ONLY_REF_SPLICE	YES	12	9	0.93	0.95	1.5672	1.4231	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,APOH->apolipoprotein_H,chr17:64208151-64252643:-	HT29_LARGE_INTESTINE	0.93	0.95	2.9903	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	TIMM23B--LINC00843	63	43	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1348	0.7746	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HT29_LARGE_INTESTINE	0.99	1	1.9094	TRUE	508	994	45	981	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	KANSL1--ARL17B	53	48	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	24	88	0.81	0.53	0.9547	0.8646	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HT29_LARGE_INTESTINE	0.53	0.81	1.8193	TRUE	181	1564	124	196	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-ND4--MT-ND4L	43	79	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	55	0	0.69	1	0.7746	1.4231	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HT29_LARGE_INTESTINE	0.69	1	2.1977	FALSE	344	827	44	306	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	ABHD12--PYGB	32	20	ABHD12	15226	chr20:25282855:-	PYGB	40868	chr20:25276240:+	ONLY_REF_SPLICE	YES	236	620	0.18	0.08	0.5764	0.3603	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},{Klijn_CCL:Other=1},NEIGHBORS_OVERLAP:-:+:[3271],ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-,PYGB->chr20:25228705-25278650:+,phosphorylase,_glycogen;_brain	HT29_LARGE_INTESTINE	0.08	0.18	0.9367	FALSE	0	0	0	1	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MTMR3--APOH	15	79	MTMR3	1205	chr22:30279348:+	APOH	33756	chr17:64225537:-	INCL_NON_REF_SPLICE	YES	12	9	0.89	0.91	0.2702	1.4231	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,APOH->apolipoprotein_H,chr17:64208151-64252643:-	HT29_LARGE_INTESTINE	0.89	0.91	1.6933	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	TIMM23--RP11-464F9.1	33	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	227	4	0.13	0.9	0.5944	0.036	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HT29_LARGE_INTESTINE	0.13	0.9	0.6304	TRUE	519	3926	326	965	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-ND6--MT-ND5	26	0	MT-ND6	1498	chrM:14176:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4683	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HT29_LARGE_INTESTINE	1	1	0.4683	FALSE	101	855	57	72	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	ZNF654--HMGB2	26	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4683	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HT29_LARGE_INTESTINE	1	1	0.4683	TRUE	0	0	0	518	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	79	MT-ND4	1213	chrM:10972:+	MT-ND4L	5376	chrM:10467:+	INCL_NON_REF_SPLICE	YES	53	0	0.61	1	0.0721	1.4231	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HT29_LARGE_INTESTINE	0.61	1	1.4952	FALSE	344	826	44	306	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	72	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	NO	42	0	0.65	1	0.0901	1.297	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HT29_LARGE_INTESTINE	0.65	1	1.3871	FALSE	344	826	44	306	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	73	MT-ND4	1245	chrM:11004:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	YES	70	0	0.52	1	0.054	1.315	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HT29_LARGE_INTESTINE	0.52	1	1.369	FALSE	344	827	44	306	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	USP6NL--UPF2	5	62	USP6NL	1312	chr10:11653442:-	UPF2	49252	chr10:11998522:-	ONLY_REF_SPLICE	YES	40	52	0.63	0.56	0.0901	1.1168	USP6NL->USP6_N-terminal_like,chr10:11495945-11653753:-,UPF2->UPF2_regulator_of_nonsense_transcripts_homolog_(yeast),chr10:11962021-12085169:-	HT29_LARGE_INTESTINE	0.56	0.63	1.2069	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	62	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	17	0	0.8	1	0.0721	1.1168	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HT29_LARGE_INTESTINE	0.8	1	1.1889	FALSE	344	826	44	306	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	51	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	13	0	0.81	1	0.054	0.9187	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HT29_LARGE_INTESTINE	0.81	1	0.9727	FALSE	344	826	44	306	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	48	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	119	0	0.3	1	0.054	0.8646	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HT29_LARGE_INTESTINE	0.3	1	0.9186	FALSE	344	827	44	306	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-ATP6--MT-CO1	13	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9985	19869	0	0	0.2342	0.018	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HT29_LARGE_INTESTINE	0	0	0.2522	FALSE	183	104	9	328	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	37	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	12	0	0.77	1	0.054	0.6665	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HT29_LARGE_INTESTINE	0.77	1	0.7205	FALSE	344	821	44	306	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	USP6NL--UPF2	10	8	USP6NL	2399	chr10:11639630:-	UPF2	52728	chr10:11990507:-	ONLY_REF_SPLICE	YES	37	165	0.33	0.1	0.1801	0.1441	USP6NL->USP6_N-terminal_like,chr10:11495945-11653753:-,UPF2->UPF2_regulator_of_nonsense_transcripts_homolog_(yeast),chr10:11962021-12085169:-	HT29_LARGE_INTESTINE	0.1	0.33	0.3242	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	MT-CO3--MT-ATP6	8	15	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1441	0.2702	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HT29_LARGE_INTESTINE	1	1	0.4143	FALSE	189	492	56	216	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	26	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	6	30	0.84	0.51	0.0901	0.4683	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HT29_LARGE_INTESTINE	0.51	0.84	0.5584	FALSE	189	492	56	216	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-CO3--MT-ATP6	7	17	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1261	0.3062	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HT29_LARGE_INTESTINE	1	1	0.4323	FALSE	189	492	56	216	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MTMR3--APOH	1	34	MTMR3	1205	chr22:30279348:+	APOH	34979	chr17:64224314:-	ONLY_REF_SPLICE	YES	12	23	0.74	0.6	0.018	0.6125	MTMR3->Oncogene{Bushman},chr22:30279144-30426855:+,myotubularin_related_protein_3,APOH->apolipoprotein_H,chr17:64208151-64252643:-	HT29_LARGE_INTESTINE	0.6	0.74	0.6305	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	C15orf57--CBX3	7	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	127	37	0.08	0.23	0.1261	0.0721	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HT29_LARGE_INTESTINE	0.08	0.23	0.1982	TRUE	267	562	48	632	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	16	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0721	0.2882	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HT29_LARGE_INTESTINE	1	1	0.3603	FALSE	189	492	56	216	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	6	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.1081	0.018	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HT29_LARGE_INTESTINE	0.88	1	0.1261	FALSE	515	4851	409	746	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	11	0	0.42	1	0.0901	0.054	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HT29_LARGE_INTESTINE	0.42	1	0.1441	FALSE	189	492	56	216	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	11	MT-CO3	1061	chrM:9267:+	MT-ATP6	5343	chrM:9085:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0.1981	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HT29_LARGE_INTESTINE	1	1	0.2521	FALSE	189	492	56	216	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MTND4P12--MT-ATP8	5	2	MTND4P12	1281	chr5:134263446:-	MT-ATP8	5480	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17	11	0.29	0.39	0.0901	0.036	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT29_LARGE_INTESTINE	0.29	0.39	0.1261	FALSE	19	17	1	5	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	5	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0721	0.0901	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HT29_LARGE_INTESTINE	1	1	0.1622	FALSE	189	492	56	216	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MTND4P12--MT-ATP8	4	5	MTND4P12	1966	chr5:134262761:-	MT-ATP8	5439	chrM:8427:+	INCL_NON_REF_SPLICE	YES	12	0	0.43	1	0.0721	0.0901	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT29_LARGE_INTESTINE	0.43	1	0.1622	FALSE	19	17	1	5	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MTND4P12--MT-ATP8	4	5	MTND4P12	2031	chr5:134262696:-	MT-ATP8	5419	chrM:8407:+	INCL_NON_REF_SPLICE	YES	39	0	0.19	1	0.0721	0.0901	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT29_LARGE_INTESTINE	0.19	1	0.1622	FALSE	19	17	1	5	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	ZYG11B--SCP2	4	5	ZYG11B	1230	chr1:53192355:+	SCP2	40863	chr1:53480562:+	ONLY_REF_SPLICE	YES	7	26	0.56	0.26	0.0721	0.0901	NEIGHBORS[99887],ZYG11B->chr1:53192126-53293014:+,zyg-11_family_member_B,_cell_cycle_regulator,SCP2->chr1:53392901-53517375:+,sterol_carrier_protein_2	HT29_LARGE_INTESTINE	0.26	0.56	0.1622	FALSE	0	0	0	1	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MTND4P12--MT-ATP8	4	4	MTND4P12	1994	chr5:134262733:-	MT-ATP8	5469	chrM:8457:+	INCL_NON_REF_SPLICE	YES	18	0	0.31	1	0.0721	0.0721	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT29_LARGE_INTESTINE	0.31	1	0.1442	FALSE	19	17	1	5	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	SLC1A5--MT-ND4L	4	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1056	0	0.01	1	0.0721	0.036	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HT29_LARGE_INTESTINE	0.01	1	0.1081	FALSE	0	0	0	189	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	9913	19290	0	0	0.0721	0.018	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HT29_LARGE_INTESTINE	0	0	0.0901	FALSE	183	104	9	328	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9998	19653	0	0	0.0721	0.018	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HT29_LARGE_INTESTINE	0	0	0.0901	FALSE	183	104	9	328	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MTND4P12--MT-ATP8	3	5	MTND4P12	1974	chr5:134262753:-	MT-ATP8	5447	chrM:8435:+	INCL_NON_REF_SPLICE	YES	13	0	0.38	1	0.054	0.0901	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT29_LARGE_INTESTINE	0.38	1	0.1441	FALSE	19	17	1	5	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	C15orf57--CBX3	3	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	122	37	0.05	0.16	0.054	0.0721	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HT29_LARGE_INTESTINE	0.05	0.16	0.1261	TRUE	267	562	48	632	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-ND6--MT-ND5	4	0	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0721	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HT29_LARGE_INTESTINE	1	1	0.0721	FALSE	101	855	57	72	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MTND4P12--MT-ATP8	3	4	MTND4P12	1773	chr5:134262954:-	MT-ATP8	5480	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12	11	0.37	0.39	0.054	0.0721	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT29_LARGE_INTESTINE	0.37	0.39	0.1261	FALSE	19	17	1	5	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MTND4P12--MT-ATP8	4	0	MTND4P12	1220	chr5:134263507:-	MT-ATP8	5486	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0721	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT29_LARGE_INTESTINE	1	1	0.0721	FALSE	19	17	1	5	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0721	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	HT29_LARGE_INTESTINE	1	1	0.0721	TRUE	22	156	2	142	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	ABHD12--PYGB	1	9	ABHD12	13895	chr20:25284186:-	PYGB	40868	chr20:25276240:+	ONLY_REF_SPLICE	NO	184	620	0.05	0.02	0.018	0.1621	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},{Klijn_CCL:Other=1},NEIGHBORS_OVERLAP:-:+:[3271],ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-,PYGB->chr20:25228705-25278650:+,phosphorylase,_glycogen;_brain	HT29_LARGE_INTESTINE	0.02	0.05	0.1801	FALSE	0	0	0	1	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	11879	18092	0	0	0.054	0.018	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HT29_LARGE_INTESTINE	0	0	0.072	FALSE	183	104	9	328	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	CALM3--MT-ND4L	3	0	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HT29_LARGE_INTESTINE	1	1	0.054	FALSE	1	1	0	107	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MTND4P12--MT-ATP8	3	0	MTND4P12	1244	chr5:134263483:-	MT-ATP8	5497	chrM:8485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HT29_LARGE_INTESTINE	1	1	0.054	FALSE	19	17	1	5	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	POLR3K--RHBDF1	3	0	POLR3K	2738	chr16:101558:-	RHBDF1	10112	chr16:115037:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.054	0	LOCAL_REARRANGEMENT:-:[4430],POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K,RHBDF1->chr16:108058-126354:-,rhomboid_5_homolog_1_(Drosophila)	HT29_LARGE_INTESTINE	1	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	FAM120B--PARK2	2	3	FAM120B	9801	chr6:170657411:+	PARK2	22301	chr6:162864505:-	ONLY_REF_SPLICE	YES	6	0	0.45	1	0.036	0.054	FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B,PARK2->ArcherDX_panel,FoundationOne_panel,chr6:161768452-163148803:-,parkin_RBR_E3_ubiquitin_protein_ligase	HT29_LARGE_INTESTINE	0.45	1	0.09	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	FAM120B--PARK2	2	2	FAM120B	8628	chr6:170639638:+	PARK2	22301	chr6:162864505:-	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.036	0.036	FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B,PARK2->ArcherDX_panel,FoundationOne_panel,chr6:161768452-163148803:-,parkin_RBR_E3_ubiquitin_protein_ligase	HT29_LARGE_INTESTINE	0.2	1	0.072	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	CAPZA2--SRP9	2	0	CAPZA2	3371	chr7:116502704:+	SRP9	25493	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	HT29_LARGE_INTESTINE	1	1	0.036	TRUE	0	0	0	9	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	SAT1--RNPC3	2	0	SAT1	1711	chrX:23802000:+	RNPC3	23740	chr1:104097656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	SAT1->chrX:23801290-23804343:+,spermidine/spermine_N1-acetyltransferase_1,RNPC3->RNA_binding_region_(RNP1,_RRM)_containing_3,chr1:104068313-104097861:+	HT29_LARGE_INTESTINE	1	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	TIMM23B--LINC00843	1	3	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	1	1	0.8	0.018	0.054	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HT29_LARGE_INTESTINE	0.8	1	0.072	TRUE	62	24	1	171	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	LAPTM4B--MTDH	1	2	LAPTM4B	6140	chr8:98831466:+	MTDH	17603	chr8:98701266:+	ONLY_REF_SPLICE	YES	245	162	0.01	0.02	0.018	0.036	LOCAL_REARRANGEMENT:+:[46287],LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta,MTDH->chr8:98656407-98740998:+,metadherin	HT29_LARGE_INTESTINE	0.01	0.02	0.054	FALSE	0	0	0	1	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	LAPTM4B--MTDH	1	2	LAPTM4B	6140	chr8:98831466:+	MTDH	18669	chr8:98703180:+	ONLY_REF_SPLICE	YES	245	156	0.01	0.02	0.018	0.036	LOCAL_REARRANGEMENT:+:[46287],LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta,MTDH->chr8:98656407-98740998:+,metadherin	HT29_LARGE_INTESTINE	0.01	0.02	0.054	FALSE	0	0	0	1	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.018	0.036	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HT29_LARGE_INTESTINE	0.75	1	0.054	FALSE	407	2205	196	549	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	C7orf50--MAD1L1	1	1	C7orf50	6340	chr7:1067894:-	MAD1L1	42333	chr7:2108973:-	ONLY_REF_SPLICE	YES	310	57	0.01	0.03	0.018	0.018	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	HT29_LARGE_INTESTINE	0.01	0.03	0.036	FALSE	0	0	0	3	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	MCF2L--STARD13	1	1	MCF2L	10405	chr13:113623028:+	STARD13	73268	chr13:33716510:-	ONLY_REF_SPLICE	YES	13	0	0.13	1	0.018	0.018	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HT29_LARGE_INTESTINE	0.13	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	MCF2L--STARD13	1	1	MCF2L	11149	chr13:113623772:+	STARD13	73268	chr13:33716510:-	ONLY_REF_SPLICE	YES	33	0	0.06	1	0.018	0.018	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HT29_LARGE_INTESTINE	0.06	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000552
HT29_LARGE_INTESTINE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	6	0.4	0.25	0.018	0.018	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HT29_LARGE_INTESTINE	0.25	0.4	0.036	FALSE	16	356	14	466	0	FALSE	ACH-000552
HT29_LARGE_INTESTINE	TRAPPC9--AGO2	1	1	TRAPPC9	9369	chr8:141407719:-	AGO2	70843	chr8:141595410:-	ONLY_REF_SPLICE	NO	89	0	0.02	1	0.018	0.018	LOCAL_REARRANGEMENT:-:[72586],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	HT29_LARGE_INTESTINE	0.02	1	0.036	TRUE	0	0	0	1	0	FALSE	ACH-000552
SNU1040_LARGE_INTESTINE	TIMM23B--LINC00843	86	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7792	0.2084	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU1040_LARGE_INTESTINE	1	1	0.9876	TRUE	508	994	45	981	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	ARMC10--OSR1	71	0	ARMC10	12353	chr7:102740016:+	OSR1	19766	chr2:19554191:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6433	0	GTEx_FI:{Blood_Vessel=[count:3=pct:0.8],Brain=[count:3=pct:0.5],Thyroid=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Esophagus=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Ovary=[count:1=pct:1.9]},ARMC10->armadillo_repeat_containing_10,chr7:102715328-102740205:+,OSR1->chr2:19551246-19558414:-,odd-skipped_related_transciption_factor_1	SNU1040_LARGE_INTESTINE	1	1	0.6433	TRUE	15	4	0	8	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	ANP32B--NCL	61	2	ANP32B	9252	chr9:100774754:+	NCL	18675	chr2:232326421:-	INCL_NON_REF_SPLICE	YES	531	1743	0.11	0.03	0.5527	0.0181	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SNU1040_LARGE_INTESTINE	0.03	0.11	0.5708	TRUE	0	0	0	7	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	TIMM23--RP11-464F9.1	49	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	374	0	0.12	1	0.444	0.0091	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU1040_LARGE_INTESTINE	0.12	1	0.4531	TRUE	519	3926	326	965	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	PLXDC1--TAF13	27	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2446	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SNU1040_LARGE_INTESTINE	1	1	0.2446	TRUE	7	10	0	216	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	C15orf57--CBX3	22	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	61	28	0.36	0.56	0.1993	0.1178	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1040_LARGE_INTESTINE	0.36	0.56	0.3171	TRUE	267	562	48	632	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	MT-ND2--MT-TM	20	0	MT-ND2	1011	chrM:4480:+	MT-TM	5069	chrM:4428:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1812	0	LOCAL_REARRANGEMENT:+:[1],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-TM->chrM:4402-4469:+,mitochondrially_encoded_tRNA_methionine	SNU1040_LARGE_INTESTINE	1	1	0.1812	FALSE	74	23	0	9	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	OR51S1--TP53I11	18	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1631	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU1040_LARGE_INTESTINE	1	1	0.1631	TRUE	402	216	10	229	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	CDC6--GRB7	14	4	CDC6	4518	chr17:38447920:+	GRB7	17982	chr17:37898505:+	ONLY_REF_SPLICE	YES	117	39	0.13	0.32	0.1269	0.0362	CDC6->Oncogene{Bushman},cell_division_cycle_6,chr17:38443885-38459171:+,GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7	SNU1040_LARGE_INTESTINE	0.13	0.32	0.1631	TRUE	0	0	0	1	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	MT-ND2--MT-TM	14	0	MT-ND2	1017	chrM:4486:+	MT-TM	5076	chrM:4435:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1269	0	LOCAL_REARRANGEMENT:+:[1],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-TM->chrM:4402-4469:+,mitochondrially_encoded_tRNA_methionine	SNU1040_LARGE_INTESTINE	1	1	0.1269	FALSE	74	23	0	9	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	HSP90AB1--MT-RNR2	13	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1178	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1040_LARGE_INTESTINE	1	1	0.1178	FALSE	13	9	0	364	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	HSPBP1--GRK5	13	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1178	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU1040_LARGE_INTESTINE	1	1	0.1178	TRUE	1	39	0	134	39	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	PKM--PPIA	12	3	PKM	16753	chr15:72494877:-	PPIA	23268	chr7:44836286:+	INCL_NON_REF_SPLICE	YES	5384	0	0	1	0.1087	0.0272	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	SNU1040_LARGE_INTESTINE	0	1	0.1359	TRUE	0	0	0	18	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	ANP32B--NCL	12	2	ANP32B	8188	chr9:100773659:+	NCL	18698	chr2:232326398:-	INCL_NON_REF_SPLICE	YES	776	1800	0.02	0.01	0.1087	0.0181	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SNU1040_LARGE_INTESTINE	0.01	0.02	0.1268	TRUE	0	0	0	7	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	MT-ND6--MT-TE	12	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1087	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1040_LARGE_INTESTINE	1	1	0.1087	FALSE	499	1288	110	792	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1087	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SNU1040_LARGE_INTESTINE	1	1	0.1087	TRUE	46	1352	75	139	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	SNHG16--RNF157-AS1	12	0	SNHG16	1092	chr17:74553939:+	RNF157-AS1	16813	chr17:74143375:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1087	0	HGNC_GENEFAM,SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,RNF157-AS1->RNF157_antisense_RNA_1,chr17:74136637-74150731:+	SNU1040_LARGE_INTESTINE	1	1	0.1087	TRUE	0	0	0	1	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	ANP32B--NCL	9	2	ANP32B	8188	chr9:100773659:+	NCL	19626	chr2:232325470:-	INCL_NON_REF_SPLICE	YES	776	1732	0.01	0.01	0.0815	0.0181	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SNU1040_LARGE_INTESTINE	0.01	0.01	0.0996	FALSE	0	0	0	7	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	C15orf57--CBX3	7	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	58	28	0.23	0.38	0.0634	0.0906	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1040_LARGE_INTESTINE	0.23	0.38	0.154	TRUE	267	562	48	632	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	MUC6--RPS18	7	2	MUC6	17225	chr11:1016857:-	RPS18	23580	chr6:33239865:+	INCL_NON_REF_SPLICE	YES	3738	0	0	1	0.0634	0.0181	MUC6->Oncogene{Bushman},chr11:1012821-1036706:-,mucin_6,_oligomeric_mucus/gel-forming,RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18	SNU1040_LARGE_INTESTINE	0	1	0.0815	FALSE	0	0	0	1	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	RP11-123O10.4--GRIP1	7	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0634	0.0181	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU1040_LARGE_INTESTINE	1	1	0.0815	FALSE	416	2512	207	587	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1040_LARGE_INTESTINE	1	1	0.0634	FALSE	13	9	0	364	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	MT-ND6--MT-TE	6	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0544	0.0362	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1040_LARGE_INTESTINE	0.83	1	0.0906	FALSE	499	1288	110	792	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	SMARCC1--MAP4	4	1	SMARCC1	13138	chr3:47742768:-	MAP4	65132	chr3:47913590:-	ONLY_REF_SPLICE	YES	151	263	0.03	0.02	0.0362	0.0091	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[68586],SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	SNU1040_LARGE_INTESTINE	0.02	0.03	0.0453	TRUE	0	0	0	1	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	ZDHHC11--SLC12A7	4	1	ZDHHC11	17563	chr5:819640:-	SLC12A7	34460	chr5:1081859:-	ONLY_REF_SPLICE	YES	35	93	0.12	0.05	0.0362	0.0091	ZDHHC11->chr5:710471-851101:-,zinc_finger_DHHC-type_containing_11,SLC12A7->chr5:1050499-1112150:-,solute_carrier_family_12_member_7	SNU1040_LARGE_INTESTINE	0.05	0.12	0.0453	TRUE	0	0	0	1	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	ANP32B--NCL	4	0	ANP32B	8161	chr9:100773632:+	NCL	19692	chr2:232325404:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SNU1040_LARGE_INTESTINE	1	1	0.0362	TRUE	0	0	0	7	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	ANP32B--NCL	4	0	ANP32B	8161	chr9:100773632:+	NCL	18803	chr2:232326293:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SNU1040_LARGE_INTESTINE	1	1	0.0362	TRUE	0	0	0	7	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0.0091	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1040_LARGE_INTESTINE	1	1	0.0363	FALSE	515	4851	409	746	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	ANP32B--NCL	3	0	ANP32B	8161	chr9:100773632:+	NCL	18698	chr2:232326398:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	{Klijn_CCL:Ovary=1},ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,NCL->chr2:232318242-232348352:-,nucleolin	SNU1040_LARGE_INTESTINE	1	1	0.0272	TRUE	0	0	0	7	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	CBX5--GNAS	3	0	CBX5	1095	chr12:54673792:-	GNAS	37563	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},CBX5->chr12:54624724-54673886:-,chromobox_5,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNU1040_LARGE_INTESTINE	1	1	0.0272	TRUE	0	1	0	3	1	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	HOXB3--CTBP2	3	0	HOXB3	1433	chr17:46681842:-	CTBP2	31024	chr10:126727724:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	HOXB3->chr17:46626232-46682274:-,homeobox_B3,CTBP2->C-terminal_binding_protein_2,chr10:126676421-126849739:-	SNU1040_LARGE_INTESTINE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1040_LARGE_INTESTINE	1	1	0.0272	FALSE	499	1288	110	792	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	SNU1040_LARGE_INTESTINE	1	1	0.0272	TRUE	22	156	2	142	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	RP11-662B19.2--WDR37	3	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	SNU1040_LARGE_INTESTINE	1	1	0.0272	TRUE	31	42	1	25	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	TULP4--RP11-732M18.3	2	3	TULP4	2609	chr6:158735300:+	RP11-732M18.3	28124	chr6:158703295:+	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0181	0.0272	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	SNU1040_LARGE_INTESTINE	0.26	1	0.0453	TRUE	121	131	5	12	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	KDM4C--TPD52L3	2	1	KDM4C	6150	chr9:6814745:+	TPD52L3	45773	chr9:6330182:+	ONLY_REF_SPLICE	YES	17	0	0.15	1	0.0181	0.0091	KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C,TPD52L3->chr9:6328349-6331900:+,tumor_protein_D52-like_3	SNU1040_LARGE_INTESTINE	0.15	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	SNHG16--RNF157-AS1	2	0	SNHG16	1092	chr17:74553939:+	RNF157-AS1	13322	chr17:74139311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	HGNC_GENEFAM,SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,RNF157-AS1->RNF157_antisense_RNA_1,chr17:74136637-74150731:+	SNU1040_LARGE_INTESTINE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	SNHG16--RNF157-AS1	2	0	SNHG16	1092	chr17:74553939:+	RNF157-AS1	18119	chr17:74149206:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	HGNC_GENEFAM,SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,RNF157-AS1->RNF157_antisense_RNA_1,chr17:74136637-74150731:+	SNU1040_LARGE_INTESTINE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	USP12--CDX2	2	0	USP12	1305	chr13:27745729:-	CDX2	20356	chr13:28539152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},USP12->chr13:27640293-27746033:-,ubiquitin_specific_peptidase_12,CDX2->Oncogene{Bushman},caudal_type_homeobox_2,chr13:28536274-28545276:-	SNU1040_LARGE_INTESTINE	1	1	0.0181	TRUE	1	0	1	1	0	TRUE	ACH-000999
SNU1040_LARGE_INTESTINE	STRAP--MGST1	1	1	STRAP	2286	chr12:16036610:+	MGST1	19159	chr12:16507165:+	ONLY_REF_SPLICE	YES	839	362	0	0.01	0.0091	0.0091	STRAP->chr12:16035325-16056412:+,serine/threonine_kinase_receptor_associated_protein,MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1	SNU1040_LARGE_INTESTINE	0	0.01	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0091	0.0091	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU1040_LARGE_INTESTINE	1	1	0.0182	TRUE	62	24	1	171	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	USP22--RP11-381P6.1	1	1	USP22	5890	chr17:20922397:-	RP11-381P6.1	28912	chr17:20882997:+	ONLY_REF_SPLICE	YES	346	0	0.01	1	0.0091	0.0091	LOCAL_INVERSION:-:+:[17240],USP22->chr17:20902910-20947073:-,ubiquitin_specific_peptidase_22,RP11-381P6.1->chr17:20841851-20885670:+	SNU1040_LARGE_INTESTINE	0.01	1	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000999
SNU1040_LARGE_INTESTINE	YWHAE--UBE2G1	1	1	YWHAE	1332	chr17:1303341:-	UBE2G1	18997	chr17:4210418:-	ONLY_REF_SPLICE	NO	2561	118	0	0.02	0.0091	0.0091	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1	SNU1040_LARGE_INTESTINE	0	0.02	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000999
MFE296_ENDOMETRIUM	TIMM23B--LINC00843	151	53	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	1.4535	0.5102	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MFE296_ENDOMETRIUM	1	1	1.9637	TRUE	508	994	45	981	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	TIMM23--RP11-464F9.1	90	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	388	3	0.2	0.97	0.8663	0.0481	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MFE296_ENDOMETRIUM	0.2	0.97	0.9144	TRUE	519	3926	326	965	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-TA--MT-TC	59	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5679	0.0578	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MFE296_ENDOMETRIUM	1	1	0.6257	FALSE	462	80	0	856	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	ZNF654--HMGB2	41	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3947	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MFE296_ENDOMETRIUM	1	1	0.3947	TRUE	0	0	0	518	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ND6--MT-TE	30	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2888	0.0096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE296_ENDOMETRIUM	1	1	0.2984	FALSE	499	1288	110	792	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	RP11-680G10.1--GSE1	22	15	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	16	1	0.7	0.2118	0.1444	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MFE296_ENDOMETRIUM	0.7	1	0.3562	TRUE	458	1351	185	561	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	BCAR3--DNTTIP2	21	5	BCAR3	2227	chr1:94311123:-	DNTTIP2	33362	chr1:94341339:-	ONLY_REF_SPLICE	YES	1	60	0.96	0.3	0.2021	0.0481	LOCAL_REARRANGEMENT:-:[20667],BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,DNTTIP2->chr1:94333373-94345474:-,deoxynucleotidyltransferase_terminal_interacting_protein_2	MFE296_ENDOMETRIUM	0.3	0.96	0.2502	TRUE	0	0	0	1	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	RP11-680G10.1--GSE1	19	12	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	42	1	0.42	0.1829	0.1155	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MFE296_ENDOMETRIUM	0.42	1	0.2984	TRUE	465	1949	224	605	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	HSP90AB1--MT-RNR2	20	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4691	0	0	1	0.1925	0.0193	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MFE296_ENDOMETRIUM	0	1	0.2118	FALSE	13	9	0	364	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	C15orf57--CBX3	15	15	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	97	51	0.24	0.37	0.1444	0.1444	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MFE296_ENDOMETRIUM	0.24	0.37	0.2888	TRUE	267	562	48	632	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-TA--MT-TC	15	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1444	0.0674	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MFE296_ENDOMETRIUM	1	1	0.2118	FALSE	462	80	0	856	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	AL589743.1--RP11-536C10.17	16	1	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	9	0	0.65	1	0.154	0.0096	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	MFE296_ENDOMETRIUM	0.65	1	0.1636	TRUE	0	33	0	45	33	FALSE	ACH-000879
MFE296_ENDOMETRIUM	AP000525.9--LA16c-60G3.6	16	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	10	0	0.63	1	0.154	0.0096	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	MFE296_ENDOMETRIUM	0.63	1	0.1636	TRUE	0	42	0	133	42	FALSE	ACH-000879
MFE296_ENDOMETRIUM	NPM1P24--SET	16	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.154	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MFE296_ENDOMETRIUM	1	1	0.154	TRUE	0	0	0	434	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	C15orf57--CBX3	12	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	94	51	0.2	0.31	0.1155	0.1059	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MFE296_ENDOMETRIUM	0.2	0.31	0.2214	TRUE	267	562	48	632	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ND6--MT-TE	14	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1348	0.0096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE296_ENDOMETRIUM	1	1	0.1444	FALSE	499	1288	110	792	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ND6--MT-TE	10	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0963	0.0578	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE296_ENDOMETRIUM	1	1	0.1541	FALSE	499	1288	110	792	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	CALM3--MT-ND4L	10	4	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1572	0	0.01	1	0.0963	0.0385	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MFE296_ENDOMETRIUM	0.01	1	0.1348	FALSE	1	1	0	107	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	HSP90AB1--MT-RNR2	10	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4739	0	0	1	0.0963	0.0193	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MFE296_ENDOMETRIUM	0	1	0.1156	FALSE	13	9	0	364	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-CO3--MT-ATP6	4	26	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	4	0.94	0.88	0.0385	0.2503	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MFE296_ENDOMETRIUM	0.88	0.94	0.2888	FALSE	189	492	56	216	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ND6--MT-TE	8	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.077	0.0866	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE296_ENDOMETRIUM	1	1	0.1636	FALSE	499	1288	110	792	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-CO3--MT-ATP6	4	23	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	20	0.96	0.57	0.0385	0.2214	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MFE296_ENDOMETRIUM	0.57	0.96	0.2599	FALSE	189	492	56	216	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	NIPA2--POLA1	9	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0866	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	MFE296_ENDOMETRIUM	1	1	0.0866	TRUE	46	1352	75	139	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	XXbac-BPG252P9.9--TUBBP2	8	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.077	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	MFE296_ENDOMETRIUM	1	1	0.077	TRUE	0	1	0	48	1	FALSE	ACH-000879
MFE296_ENDOMETRIUM	ZNF608--RP11-284A20.2	6	6	ZNF608	13402	chr5:123979204:-	RP11-284A20.2	20861	chr5:124205603:-	INCL_NON_REF_SPLICE	YES	136	0	0.08	1	0.0578	0.0578	ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608,RP11-284A20.2->chr5:124204665-124205607:-	MFE296_ENDOMETRIUM	0.08	1	0.1156	TRUE	0	0	0	1	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	MT-ND4--MT-ATP8	7	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE296_ENDOMETRIUM	1	1	0.0674	FALSE	230	193	14	283	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE296_ENDOMETRIUM	1	1	0.0674	FALSE	499	1288	110	792	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ND4--MT-ATP8	6	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE296_ENDOMETRIUM	1	1	0.0578	FALSE	230	198	14	283	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ND5--MT-ND6	6	0	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	MFE296_ENDOMETRIUM	1	1	0.0578	FALSE	26	124	4	93	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	NPM1P24--SET	6	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MFE296_ENDOMETRIUM	1	1	0.0578	TRUE	0	0	0	434	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-CO3--MT-ATP6	5	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0481	0.0193	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MFE296_ENDOMETRIUM	0.78	1	0.0674	FALSE	189	492	56	216	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ND4--MT-ATP8	3	10	MT-ND4	2255	chrM:12014:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	1989	0	0.01	1	0.0289	0.0963	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE296_ENDOMETRIUM	0.01	1	0.1252	FALSE	216	209	16	281	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ATP6--MT-CO1	4	5	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	11284	20332	0	0	0.0385	0.0481	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MFE296_ENDOMETRIUM	0	0	0.0866	FALSE	183	104	9	328	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-TA--MT-TC	5	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0.0096	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MFE296_ENDOMETRIUM	1	1	0.0577	FALSE	462	80	0	856	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ATP6--MT-CO1	5	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MFE296_ENDOMETRIUM	1	1	0.0481	FALSE	183	104	9	328	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MYL9--MT-CO3	5	0	MYL9	4926	chr20:35178072:+	MT-CO3	8144	chrM:9268:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MFE296_ENDOMETRIUM	1	1	0.0481	FALSE	29	0	0	10	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-CO3--MT-ATP6	4	3	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.0385	0.0289	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MFE296_ENDOMETRIUM	0.7	1	0.0674	FALSE	189	492	56	216	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	GNGT1--AC002076.10	4	2	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0385	0.0193	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	MFE296_ENDOMETRIUM	0.86	0.86	0.0578	FALSE	0	28	0	37	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ATP6--MT-CO1	3	5	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11405	21931	0	0	0.0289	0.0481	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MFE296_ENDOMETRIUM	0	0	0.077	FALSE	183	104	9	328	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ND4--MT-ATP8	3	5	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	15097	0	0	1	0.0289	0.0481	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE296_ENDOMETRIUM	0	1	0.077	FALSE	231	217	16	283	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ND6--MT-TE	3	5	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0.0481	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE296_ENDOMETRIUM	1	1	0.077	FALSE	499	1288	110	792	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	TIMM23B--LINC00843	4	1	TIMM23B	1257	chr10:51371646:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	547	1	0.01	0.83	0.0385	0.0096	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MFE296_ENDOMETRIUM	0.01	0.83	0.0481	FALSE	0	0	0	10	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	WWOX--VAT1L	4	1	WWOX	6262	chr16:78149051:+	VAT1L	42429	chr16:78005747:+	ONLY_REF_SPLICE	YES	30	0	0.14	1	0.0385	0.0096	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	MFE296_ENDOMETRIUM	0.14	1	0.0481	TRUE	0	1	0	1	1	TRUE	ACH-000879
MFE296_ENDOMETRIUM	AP003900.6--RP11-435B5.4	4	0	AP003900.6	1122	chr21:11169841:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	MFE296_ENDOMETRIUM	1	1	0.0385	TRUE	1	3	0	6	3	TRUE	ACH-000879
MFE296_ENDOMETRIUM	MT-ND4--MT-ATP8	4	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE296_ENDOMETRIUM	1	1	0.0385	FALSE	231	205	14	283	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MYL6--GNAS	4	0	MYL6	2462	chr12:56553406:+	GNAS	25173	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	MFE296_ENDOMETRIUM	1	1	0.0385	TRUE	0	1	0	3	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MFE296_ENDOMETRIUM	1	1	0.0385	TRUE	0	0	0	434	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1083	chr6:30691572:-	TUBBP2	4900	chr13:41959193:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	MFE296_ENDOMETRIUM	1	1	0.0385	TRUE	0	1	0	48	1	FALSE	ACH-000879
MFE296_ENDOMETRIUM	GNGT1--AC002076.10	3	3	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	2	1	0.75	0.86	0.0289	0.0289	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	MFE296_ENDOMETRIUM	0.75	0.86	0.0578	FALSE	0	10	0	30	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ND4--MT-ATP8	3	3	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	14485	611	0	0.01	0.0289	0.0289	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE296_ENDOMETRIUM	0	0.01	0.0578	FALSE	231	217	16	283	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ND4--MT-ATP8	3	3	MT-ND4	1534	chrM:11293:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	18002	1	0	0.86	0.0289	0.0289	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE296_ENDOMETRIUM	0	0.86	0.0578	FALSE	231	217	16	283	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	RP11-141M1.3--STARD13	3	3	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	12	0.67	0.33	0.0289	0.0289	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	MFE296_ENDOMETRIUM	0.33	0.67	0.0578	FALSE	141	264	50	91	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	XXbac-BPG252P9.9--TUBBP2	3	2	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	YES	4006	0	0	1	0.0289	0.0193	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	MFE296_ENDOMETRIUM	0	1	0.0482	FALSE	0	1	0	48	1	FALSE	ACH-000879
MFE296_ENDOMETRIUM	AP003900.6--RP11-435B5.4	3	0	AP003900.6	3299	chr21:11174002:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	MFE296_ENDOMETRIUM	1	1	0.0289	TRUE	0	1	0	4	1	TRUE	ACH-000879
MFE296_ENDOMETRIUM	HMGA2--MSRB3	3	0	HMGA2	5315	chr12:66232349:+	MSRB3	29738	chr12:65702309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0289	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3	MFE296_ENDOMETRIUM	1	1	0.0289	TRUE	0	0	0	2	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	MT-ATP6--MT-CO1	3	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MFE296_ENDOMETRIUM	1	1	0.0289	FALSE	183	104	9	328	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MFE296_ENDOMETRIUM	1	1	0.0289	FALSE	183	104	9	328	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MFE296_ENDOMETRIUM	1	1	0.0289	FALSE	189	492	56	216	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ND4--MT-ATP8	3	0	MT-ND4	1110	chrM:10869:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE296_ENDOMETRIUM	1	1	0.0289	FALSE	230	193	14	283	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE296_ENDOMETRIUM	1	1	0.0289	FALSE	499	1288	110	792	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	RP11-141M1.3--STARD13	2	4	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	12	0.86	0.33	0.0193	0.0385	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	MFE296_ENDOMETRIUM	0.33	0.86	0.0578	FALSE	49	120	16	70	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	RP11-673C5.1--RP11-112H10.6	3	0	RP11-673C5.1	1629	chr15:71457126:-	RP11-112H10.6	5396	chr17:56553562:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	RP11-673C5.1->chr15:71457109-71457754:-,RP11-112H10.6->chr17:56553499-56554311:-	MFE296_ENDOMETRIUM	1	1	0.0289	TRUE	0	0	0	2	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	SLC35E4--OSBP2	2	1	SLC35E4	2418	chr22:31033056:+	OSBP2	14958	chr22:31090195:+	ONLY_REF_SPLICE	YES	36	0	0.08	1	0.0193	0.0096	NEIGHBORS[24766],SLC35E4->chr22:31031639-31065003:+,solute_carrier_family_35_member_E4,OSBP2->chr22:31089769-31303811:+,oxysterol_binding_protein_2	MFE296_ENDOMETRIUM	0.08	1	0.0289	FALSE	0	1	0	3	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	CTDSP1--C9orf3	2	0	CTDSP1	5150	chr2:219267128:+	C9orf3	48479	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:17=pct:4.6],Esophagus=[count:10=pct:2.5],Uterus=[count:6=pct:14.0],Nerve=[count:6=pct:3.5],Skin=[count:4=pct:1.3],Colon=[count:4=pct:2.1],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Salivary_Gland=[count:1=pct:2.6],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Brain=[count:1=pct:0.2]},GTEx_v2:{count=84;pct=0.97%;dist=Artery_-_Tibial=9,Nerve_-_Tibial=8,Esophagus_-_Muscularis=8,Artery_-_Aorta=7,Skin_-_Sun_Exposed_(Lower_leg)=6,Heart_-_Left_Ventricle=6,Artery_-_Coronary=5,Uterus=4,Esophagus_-_Gastroesophageal_Junction=4,Adipose_-_Subcutaneous=3,Vagina=2,Prostate=2,Esophagus_-_Mucosa=2,Adrenal_Gland=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Colon_-_Sigmoid=2,Colon_-_Transverse=2,Ovary=1,Pancreas=1,Brain_-_Hippocampus=1,Kidney_-_Cortex=1,Liver=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1,Brain_-_Substantia_nigra=1},CTDSP1->CTD_small_phosphatase_1,chr2:219262979-219270664:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	MFE296_ENDOMETRIUM	1	1	0.0193	TRUE	58	57	6	3	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	DARS2--NDC1	2	0	DARS2	12601	chr1:173810111:+	NDC1	42094	chr1:54233706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	DARS2->aspartyl-tRNA_synthetase_2,_mitochondrial,chr1:173793641-173827684:+,NDC1->NDC1_transmembrane_nucleoporin,chr1:54231133-54304533:-	MFE296_ENDOMETRIUM	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	DDHD1--C9orf3	2	0	DDHD1	4498	chr14:53570401:-	C9orf3	64343	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	DDHD1->DDHD_domain_containing_1,chr14:53510686-53620000:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	MFE296_ENDOMETRIUM	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	MFE296_ENDOMETRIUM	1	1	0.0193	TRUE	0	9	0	44	1	FALSE	ACH-000879
MFE296_ENDOMETRIUM	PRPF40A--CANX	2	0	PRPF40A	5065	chr2:153551056:-	CANX	41806	chr5:179136874:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	PRPF40A->chr2:153508107-153574511:-,pre-mRNA_processing_factor_40_homolog_A,CANX->calnexin,chr5:179105629-179157926:+	MFE296_ENDOMETRIUM	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MFE296_ENDOMETRIUM	1	1	0.0193	FALSE	416	2512	207	587	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	RSRC1--PDSS1	2	0	RSRC1	11834	chr3:158015864:+	PDSS1	29938	chr10:27009147:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,PDSS1->chr10:26986588-27035727:+,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_1	MFE296_ENDOMETRIUM	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	SLC13A3--RHOC	2	0	SLC13A3	3341	chr20:45298682:-	RHOC	33268	chr1:113244317:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	SLC13A3->chr20:45186463-45304714:-,solute_carrier_family_13_member_3,RHOC->Oncogene{Bushman},chr1:113243728-113250056:-,ras_homolog_family_member_C	MFE296_ENDOMETRIUM	1	1	0.0193	TRUE	0	0	0	1	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	SLC35E4--OSBP2	2	0	SLC35E4	2418	chr22:31033056:+	OSBP2	26424	chr22:31266416:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	NEIGHBORS[24766],SLC35E4->chr22:31031639-31065003:+,solute_carrier_family_35_member_E4,OSBP2->chr22:31089769-31303811:+,oxysterol_binding_protein_2	MFE296_ENDOMETRIUM	1	1	0.0193	FALSE	0	2	0	3	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0193	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MFE296_ENDOMETRIUM	1	1	0.0193	TRUE	5	8	0	33	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	RP11-476K15.1--CTD-2015H3.2	1	2	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0096	0.0193	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	MFE296_ENDOMETRIUM	0.75	1	0.0289	FALSE	0	46	0	73	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	TNS3--PKD1L1	1	2	TNS3	1132	chr7:47622025:-	PKD1L1	75245	chr7:47906212:-	ONLY_REF_SPLICE	YES	54	0	0.05	1	0.0096	0.0193	{Klijn_CCL:Lung=2},TNS3->chr7:47314752-47622156:-,tensin_3,PKD1L1->chr7:47814250-47988088:-,polycystin_1_like_1,_transient_receptor_potential_channel_interacting	MFE296_ENDOMETRIUM	0.05	1	0.0289	TRUE	0	0	0	1	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	AC009961.3--MARCH7	1	1	AC009961.3	2693	chr2:160567228:-	MARCH7	13321	chr2:160585520:+	ONLY_REF_SPLICE	YES	1	110	0.67	0.02	0.0096	0.0096	LOCAL_INVERSION:-:+:[54],AC009961.3->chr2:160527219-160568946:-,MARCH7->chr2:160569000-160627538:+,membrane_associated_ring-CH-type_finger_7	MFE296_ENDOMETRIUM	0.02	0.67	0.0192	TRUE	0	1	0	1	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	CTD-2152M20.2--GOLPH3	1	1	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	NO	0	58	1	0.03	0.0096	0.0096	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	MFE296_ENDOMETRIUM	0.03	1	0.0192	TRUE	10	26	2	24	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	GPALPP1--GTF2F2	1	1	GPALPP1	1191	chr13:45563877:+	GTF2F2	24571	chr13:45781559:+	ONLY_REF_SPLICE	YES	90	145	0.02	0.01	0.0096	0.0096	NEIGHBORS[86904],GPALPP1->GPALPP_motifs_containing_1,chr13:45563687-45607746:+,GTF2F2->chr13:45694650-45858237:+,general_transcription_factor_IIF_subunit_2	MFE296_ENDOMETRIUM	0.01	0.02	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	PPP1R12C--CNN2	1	1	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	NO	145	954	0.01	0	0.0096	0.0096	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	MFE296_ENDOMETRIUM	0	0.01	0.0192	FALSE	35	34	3	30	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	PVT1--SNTB1	1	1	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	15	0	0.12	1	0.0096	0.0096	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	MFE296_ENDOMETRIUM	0.12	1	0.0192	TRUE	0	0	0	25	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	RBM25--IVNS1ABP	1	1	RBM25	11994	chr14:73566458:+	IVNS1ABP	35753	chr1:185274775:-	ONLY_REF_SPLICE	YES	255	250	0.01	0.01	0.0096	0.0096	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=2},RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	MFE296_ENDOMETRIUM	0.01	0.01	0.0192	FALSE	1	0	0	1	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	RHOA--RP11-632K20.7	1	1	RHOA	2179	chr3:49449253:-	RP11-632K20.7	15712	chr15:32825569:-	ONLY_REF_SPLICE	YES	2391	12	0	0.14	0.0096	0.0096	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,RP11-632K20.7->chr15:32812049-32829127:-	MFE296_ENDOMETRIUM	0	0.14	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	RPL32P3--IFT122	1	1	RPL32P3	4754	chr3:129112478:-	IFT122	38380	chr3:129221554:+	ONLY_REF_SPLICE	NO	8	69	0.2	0.03	0.0096	0.0096	GTEx_FI:{Brain=[count:2=pct:0.3],Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},LOCAL_INVERSION:-:+:[40470],RPL32P3->chr3:129101765-129118498:-,ribosomal_protein_L32_pseudogene_3,IFT122->chr3:129158968-129239198:+,intraflagellar_transport_122	MFE296_ENDOMETRIUM	0.03	0.2	0.0192	TRUE	0	0	0	4	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	SPRY4--PCDHGA1	1	1	SPRY4	2611	chr5:141704409:-	PCDHGA1	16829	chr5:140874374:+	ONLY_REF_SPLICE	YES	143	15	0.01	0.12	0.0096	0.0096	SPRY4->chr5:141689992-141706020:-,sprouty_RTK_signaling_antagonist_4,PCDHGA1->chr5:140710252-140892546:+,protocadherin_gamma_subfamily_A,_1	MFE296_ENDOMETRIUM	0.01	0.12	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000879
MFE296_ENDOMETRIUM	WWOX--VAT1L	1	1	WWOX	6262	chr16:78149051:+	VAT1L	43513	chr16:78011494:+	ONLY_REF_SPLICE	NO	30	0	0.06	1	0.0096	0.0096	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	MFE296_ENDOMETRIUM	0.06	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000879
MFE296_ENDOMETRIUM	ZNF561--DNM2	1	1	ZNF561	2635	chr19:9730108:-	DNM2	30483	chr19:10904396:+	ONLY_REF_SPLICE	YES	76	260	0.03	0.01	0.0096	0.0096	ZNF561->chr19:9715356-9732075:-,zinc_finger_protein_561,DNM2->chr19:10828755-10944164:+,dynamin_2	MFE296_ENDOMETRIUM	0.01	0.03	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000879
LN443_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	64	37	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8071	0.4666	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	1.2737	TRUE	508	994	45	981	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MCUR1--SRSF10	69	0	MCUR1	11892	chr6:13790712:-	SRSF10	27160	chr1:24296868:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8701	0	MCUR1->chr6:13786789-13814800:-,mitochondrial_calcium_uniporter_regulator_1,SRSF10->chr1:24291294-24307417:-,serine/arginine-rich_splicing_factor_10	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.8701	TRUE	1	0	0	3	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MYO1E--ANXA2	45	23	MYO1E	1403	chr15:59664697:-	ANXA2	62571	chr15:60644675:-	ONLY_REF_SPLICE	YES	52	5493	0.57	0.01	0.5675	0.29	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},MYO1E->chr15:59427113-59665099:-,myosin_IE,ANXA2->annexin_A2,chr15:60639333-60695082:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.01	0.57	0.8575	TRUE	0	0	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	49	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6179	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.6179	TRUE	0	0	0	518	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	34	24	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4288	0.3026	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.7314	TRUE	458	1351	185	561	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	37	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	268	13	0.14	0.77	0.4666	0.0883	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.14	0.77	0.5549	TRUE	519	3926	326	965	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	28	12	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	32	1	0.56	0.3531	0.1513	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN443_CENTRAL_NERVOUS_SYSTEM	0.56	1	0.5044	TRUE	465	1949	224	605	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	30	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3783	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.3783	TRUE	402	216	10	229	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	NEXN--GIPC2	20	18	NEXN	1247	chr1:78354444:+	GIPC2	24874	chr1:78585077:+	ONLY_REF_SPLICE	YES	186	1	0.17	0.97	0.2522	0.227	NEIGHBORS[35646],NEXN->chr1:78354198-78409580:+,nexilin_F-actin_binding_protein,GIPC2->GIPC_PDZ_domain_containing_family_member_2,chr1:78445226-78604133:+	LN443_CENTRAL_NERVOUS_SYSTEM	0.17	0.97	0.4792	FALSE	0	1	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	14	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8992	18449	0	0	0.1765	0.0126	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN443_CENTRAL_NERVOUS_SYSTEM	0	0	0.1891	FALSE	183	104	9	328	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-RNR2	5	35	MT-ND5	2712	chrM:14048:+	MT-RNR2	5832	chrM:1690:+	INCL_NON_REF_SPLICE	YES	22	0	0.65	1	0.0631	0.4414	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN443_CENTRAL_NERVOUS_SYSTEM	0.65	1	0.5045	FALSE	4	13	1	9	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	COL1A2--PTMA	11	5	COL1A2	14602	chr7:94041987:+	PTMA	37657	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	6763	5	0	0.76	0.1387	0.0631	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	LN443_CENTRAL_NERVOUS_SYSTEM	0	0.76	0.2018	TRUE	0	0	0	9	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-RNR2	3	36	MT-ND5	2718	chrM:14054:+	MT-RNR2	5841	chrM:1699:+	INCL_NON_REF_SPLICE	YES	17	0	0.7	1	0.0378	0.454	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN443_CENTRAL_NERVOUS_SYSTEM	0.7	1	0.4918	FALSE	4	13	1	9	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-RNR2	4	31	MT-ND5	2647	chrM:13983:+	MT-RNR2	5832	chrM:1690:+	INCL_NON_REF_SPLICE	YES	2072	0	0.02	1	0.0504	0.3909	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN443_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.4413	FALSE	4	13	1	9	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	LONP2--RP11-363E7.3	9	7	LONP2	12890	chr16:48337216:+	RP11-363E7.3	29808	chr9:19464053:-	ONLY_REF_SPLICE	YES	61	4	0.21	0.8	0.1135	0.0883	LONP2->chr16:48278207-48397033:+,lon_peptidase_2,_peroxisomal,RP11-363E7.3->chr9:19460924-19464522:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.21	0.8	0.2018	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-RNR2	3	31	MT-ND5	2680	chrM:14016:+	MT-RNR2	5857	chrM:1715:+	INCL_NON_REF_SPLICE	NO	1001	0	0.03	1	0.0378	0.3909	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN443_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.4287	FALSE	4	13	1	9	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	10	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.59	1	0.1261	0.0378	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.59	1	0.1639	FALSE	125	705	46	456	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	9	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	39	36	0.28	0.29	0.1135	0.0757	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LN443_CENTRAL_NERVOUS_SYSTEM	0.28	0.29	0.1892	TRUE	267	562	48	632	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	LONP2--RP11-363E7.3	8	10	LONP2	12890	chr16:48337216:+	RP11-363E7.3	29370	chr9:19464491:-	INCL_NON_REF_SPLICE	YES	61	0	0.23	1	0.1009	0.1261	LONP2->chr16:48278207-48397033:+,lon_peptidase_2,_peroxisomal,RP11-363E7.3->chr9:19460924-19464522:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.23	1	0.227	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	10	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1261	0.0252	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.1513	FALSE	292	1546	117	613	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	10	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4086	0	0	1	0.1261	0.0126	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN443_CENTRAL_NERVOUS_SYSTEM	0	1	0.1387	FALSE	13	9	0	364	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	10	1	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	9056	0	0	1	0.1261	0.0126	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN443_CENTRAL_NERVOUS_SYSTEM	0	1	0.1387	FALSE	63	17	1	58	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	TMEM19--SRGAP1	7	13	TMEM19	1724	chr12:72080590:+	SRGAP1	17834	chr12:64377727:+	ONLY_REF_SPLICE	YES	109	26	0.16	0.43	0.0883	0.1639	TMEM19->chr12:72079867-72097836:+,transmembrane_protein_19,SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+	LN443_CENTRAL_NERVOUS_SYSTEM	0.16	0.43	0.2522	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	10	0	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1261	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.1261	FALSE	63	17	1	58	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	TRIM26--MPP5	8	5	TRIM26	6404	chr6:30164293:-	MPP5	30301	chr14:67786947:+	ONLY_REF_SPLICE	YES	50	178	0.21	0.07	0.1009	0.0631	TRIM26->chr6:30152232-30181204:-,tripartite_motif_containing_26,MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5	LN443_CENTRAL_NERVOUS_SYSTEM	0.07	0.21	0.164	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND6	8	1	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	2345	1	0	0.1009	0.0126	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	LN443_CENTRAL_NERVOUS_SYSTEM	0	1	0.1135	FALSE	26	124	4	93	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	6	6	MT-ATP6	1244	chrM:8770:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	NO	13349	16714	0	0	0.0757	0.0757	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN443_CENTRAL_NERVOUS_SYSTEM	0	0	0.1514	FALSE	183	104	9	328	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ND5--MT-ND6	6	6	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	3	1	0.8	0.0757	0.0757	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	LN443_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.1514	FALSE	26	124	4	93	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	7	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0883	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0883	FALSE	63	17	1	58	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	6	4	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	10400	0	0	1	0.0757	0.0504	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN443_CENTRAL_NERVOUS_SYSTEM	0	1	0.1261	FALSE	63	17	1	58	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	6	2	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	10055	8431	0	0	0.0757	0.0252	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN443_CENTRAL_NERVOUS_SYSTEM	0	0	0.1009	FALSE	63	17	1	58	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-ND2	6	0	MT-ATP6	1560	chrM:9086:+	MT-ND2	5549	chrM:5337:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0757	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0757	FALSE	177	96	13	17	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	6	0	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0757	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0757	FALSE	63	17	1	58	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	4	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	39	38	0.2	0.21	0.0504	0.0757	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LN443_CENTRAL_NERVOUS_SYSTEM	0.2	0.21	0.1261	TRUE	267	562	48	632	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	5	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4133	0	0	1	0.0631	0.0126	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN443_CENTRAL_NERVOUS_SYSTEM	0	1	0.0757	FALSE	13	9	0	364	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	4	5	MT-ATP6	1303	chrM:8829:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	14060	0	0	1	0.0504	0.0631	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN443_CENTRAL_NERVOUS_SYSTEM	0	1	0.1135	FALSE	63	17	1	58	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	RTTN--ROCK1	4	5	RTTN	43858	chr18:67715207:-	ROCK1	61195	chr18:18650574:-	ONLY_REF_SPLICE	YES	199	165	0.04	0.05	0.0504	0.0631	RTTN->chr18:67671029-67873181:-,rotatin,ROCK1->Rho_associated_coiled-coil_containing_protein_kinase_1,chr18:18526867-18691812:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.04	0.05	0.1135	TRUE	0	0	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	VIM-AS1--OAZ1	5	1	VIM-AS1	1435	chr10:17271550:-	OAZ1	11391	chr19:2271081:+	INCL_NON_REF_SPLICE	NO	14036	6154	0	0	0.0631	0.0126	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1	LN443_CENTRAL_NERVOUS_SYSTEM	0	0	0.0757	FALSE	0	0	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	5	1	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	YES	5051	0	0	1	0.0631	0.0126	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN443_CENTRAL_NERVOUS_SYSTEM	0	1	0.0757	FALSE	0	1	0	48	1	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	COA1--STK17A	5	0	COA1	1289	chr7:43769028:-	STK17A	27976	chr7:43635500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0631	0	NEIGHBORS_OVERLAP:-:+:[18330],COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,STK17A->chr7:43622357-43666385:+,serine/threonine_kinase_17a	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0631	FALSE	0	3	1	13	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	5	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0631	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0631	TRUE	1	0	0	97	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-ND2	5	0	MT-ATP6	1098	chrM:8624:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0631	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0631	FALSE	177	96	13	17	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0631	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0631	FALSE	63	17	1	58	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	5	0	XXbac-BPG252P9.9	1068	chr6:30691587:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0631	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0631	TRUE	0	1	0	48	1	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	INPP5A--ADK	4	2	INPP5A	4583	chr10:134464009:+	ADK	28647	chr10:76153899:+	ONLY_REF_SPLICE	YES	16	217	0.27	0.03	0.0504	0.0252	INPP5A->chr10:134351324-134596979:+,inositol_polyphosphate-5-phosphatase_A,ADK->adenosine_kinase,chr10:75910960-76469061:+	LN443_CENTRAL_NERVOUS_SYSTEM	0.03	0.27	0.0756	TRUE	0	0	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	4	1	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	6181	1	0	0.83	0.0504	0.0126	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	LN443_CENTRAL_NERVOUS_SYSTEM	0	0.83	0.063	FALSE	1	0	0	97	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	JSRP1--VIM	3	5	JSRP1	1231	chr19:2269528:-	VIM	11553	chr10:17271404:+	INCL_NON_REF_SPLICE	YES	2	5774	0.8	0	0.0378	0.0631	JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,VIM->chr10:17270258-17279592:+,vimentin	LN443_CENTRAL_NERVOUS_SYSTEM	0	0.8	0.1009	TRUE	0	0	0	3	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	4	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	8857	17773	0	0	0.0504	0.0126	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN443_CENTRAL_NERVOUS_SYSTEM	0	0	0.063	FALSE	183	104	9	328	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	TRIM26--MPP5	4	1	TRIM26	5173	chr6:30166206:-	MPP5	30301	chr14:67786947:+	ONLY_REF_SPLICE	YES	54	178	0.08	0.03	0.0504	0.0126	TRIM26->chr6:30152232-30181204:-,tripartite_motif_containing_26,MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5	LN443_CENTRAL_NERVOUS_SYSTEM	0.03	0.08	0.063	TRUE	0	0	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	VIM-AS1--OAZ1	3	5	VIM-AS1	1577	chr10:17271408:-	OAZ1	9834	chr19:2269524:+	INCL_NON_REF_SPLICE	YES	6707	0	0	1	0.0378	0.0631	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1	LN443_CENTRAL_NERVOUS_SYSTEM	0	1	0.1009	TRUE	0	0	0	2	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0504	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0504	TRUE	0	1	0	48	1	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0504	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0504	TRUE	0	1	0	48	1	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5332	chrM:6554:+	INCL_NON_REF_SPLICE	YES	8992	18650	0	0	0.0378	0.0126	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LN443_CENTRAL_NERVOUS_SYSTEM	0	0	0.0504	FALSE	183	104	9	328	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	7	1	0.36	0.0378	0.0126	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.36	1	0.0504	FALSE	25	145	6	90	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	3	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	2	1	0.67	0.0378	0.0126	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LN443_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.0504	FALSE	416	2512	207	587	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0378	0.0126	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0504	FALSE	407	2205	196	549	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	LY6E--S100A6	3	0	LY6E	4687	chr8:144103227:+	S100A6	9963	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0378	TRUE	0	0	0	7	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0378	FALSE	63	17	1	58	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0378	TRUE	0	0	0	434	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	14	0	0.39	1	0.0126	0.1009	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.39	1	0.1135	FALSE	164	806	69	479	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	SLC1A5--MT-ND4L	3	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0378	FALSE	0	0	0	189	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1446	chr6:30691209:-	TUBBP2	4857	chr13:41959236:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0378	TRUE	0	1	0	48	1	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1083	chr6:30691572:-	TUBBP2	4900	chr13:41959193:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0378	TRUE	0	1	0	48	1	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	MB21D2--FGF12	2	2	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	49	48	0.08	0.08	0.0252	0.0252	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	LN443_CENTRAL_NERVOUS_SYSTEM	0.08	0.08	0.0504	FALSE	0	17	0	46	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	NEXN--GIPC2	1	6	NEXN	1247	chr1:78354444:+	GIPC2	27063	chr1:78601276:+	ONLY_REF_SPLICE	YES	186	14	0.04	0.33	0.0126	0.0757	NEIGHBORS[35646],NEXN->chr1:78354198-78409580:+,nexilin_F-actin_binding_protein,GIPC2->GIPC_PDZ_domain_containing_family_member_2,chr1:78445226-78604133:+	LN443_CENTRAL_NERVOUS_SYSTEM	0.04	0.33	0.0883	FALSE	0	0	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	TBC1D14--KIAA0232	2	2	TBC1D14	4099	chr4:6925838:+	KIAA0232	33610	chr4:6858891:+	ONLY_REF_SPLICE	YES	14	13	0.22	0.24	0.0252	0.0252	LOCAL_REARRANGEMENT:+:[25072],TBC1D14->TBC1_domain_family_member_14,chr4:6910969-7034845:+,KIAA0232->KIAA0232,chr4:6783102-6885897:+	LN443_CENTRAL_NERVOUS_SYSTEM	0.22	0.24	0.0504	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	NRP1--PARD3	2	1	NRP1	4012	chr10:33619636:-	PARD3	56536	chr10:34626354:-	ONLY_REF_SPLICE	YES	681	50	0	0.06	0.0252	0.0126	GTEx_FI:{Nerve=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Kidney=[count:1=pct:7.1],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Kidney_-_Cortex=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Lung=1},NRP1->chr10:33466420-33625190:-,neuropilin_1,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	LN443_CENTRAL_NERVOUS_SYSTEM	0	0.06	0.0378	FALSE	0	0	0	2	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	RAD18--SRGAP3	2	1	RAD18	8545	chr3:8977555:-	SRGAP3	62987	chr3:9036207:-	ONLY_REF_SPLICE	YES	83	2	0.03	0.6	0.0252	0.0126	LOCAL_REARRANGEMENT:-:[16818],RAD18->RAD18,_E3_ubiquitin_protein_ligase,chr3:8817088-9005457:-,SRGAP3->Oncogene{Bushman},SLIT-ROBO_Rho_GTPase_activating_protein_3,chr3:9022275-9404737:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.03	0.6	0.0378	TRUE	0	0	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0.0126	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0378	TRUE	477	1352	189	275	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	SORBS1--ENTPD1-AS1	2	1	SORBS1	3202	chr10:97250792:-	ENTPD1-AS1	66609	chr10:97636417:-	ONLY_REF_SPLICE	YES	5	33	0.38	0.08	0.0252	0.0126	SORBS1->chr10:97071528-97321171:-,sorbin_and_SH3_domain_containing_1,ENTPD1-AS1->ENTPD1_antisense_RNA_1,chr10:97512963-97849995:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.08	0.38	0.0378	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	AC074363.1--XIRP2	2	0	AC074363.1	2265	chr2:168346787:+	XIRP2	14758	chr2:168096365:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	LOCAL_REARRANGEMENT:+:[33418],AC074363.1->chr2:168149681-168414843:+,XIRP2->chr2:167744997-168116263:+,xin_actin_binding_repeat_containing_2	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	ARHGAP5--CTD-2162K18.5	2	0	ARHGAP5	8068	chr14:32563592:+	CTD-2162K18.5	28184	chr19:37318552:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,CTD-2162K18.5->chr19:37288420-37319017:+	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	EPS15--FAF1	2	0	EPS15	1130	chr1:51984871:-	FAF1	40284	chr1:51323669:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	EPS15->Oncogene{Bushman},chr1:51819935-51985000:-,epidermal_growth_factor_receptor_pathway_substrate_15,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	1	0	1	1	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	FNTA--BIN3	2	0	FNTA	2593	chr8:42911689:+	BIN3	22423	chr8:22502316:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	FNTA->chr8:42889337-42940931:+,farnesyltransferase,_CAAX_box,_alpha,BIN3->bridging_integrator_3,chr8:22477931-22526661:-	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	IFI44L--PTPN11	2	0	IFI44L	1650	chr1:79086256:+	PTPN11	36257	chr12:112939948:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	IFI44L->chr1:79085607-79111830:+,interferon_induced_protein_44_like,PTPN11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:112856155-112947717:+,protein_tyrosine_phosphatase,_non-receptor_type_11	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	KCNQ5-IT1--KCNQ5	2	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	FALSE	1	11	0	34	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	LONP2--RP11-363E7.3	1	4	LONP2	12890	chr16:48337216:+	RP11-363E7.3	31124	chr9:19461355:-	ONLY_REF_SPLICE	YES	61	2	0.08	0.71	0.0126	0.0504	LONP2->chr16:48278207-48397033:+,lon_peptidase_2,_peroxisomal,RP11-363E7.3->chr9:19460924-19464522:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.08	0.71	0.063	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	NPW--MYSM1	2	0	NPW	1177	chr16:2060103:+	MYSM1	19923	chr1:59134710:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	NPW->chr16:2059927-2070756:+,neuropeptide_W,MYSM1->Myb_like,_SWIRM_and_MPN_domains_1,chr1:59120411-59165764:-	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	RPL15--COL6A2	2	0	RPL15	1695	chr3:23958730:+	COL6A2	13236	chr21:47531364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	RPL15->chr3:23958036-23965183:+,ribosomal_protein_L15,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	TMEM19--SRGAP1	2	0	TMEM19	1234	chr12:72080100:+	SRGAP1	17834	chr12:64377727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	TMEM19->chr12:72079867-72097836:+,transmembrane_protein_19,SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	TMEM244--ARHGAP18	2	0	TMEM244	2478	chr6:130166912:-	ARHGAP18	10024	chr6:129963163:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	GTEx_FI:{Brain=[count:4=pct:0.6]},TMEM244->chr6:130152389-130182692:-,transmembrane_protein_244,ARHGAP18->Rho_GTPase_activating_protein_18,chr6:129897277-130031370:-	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	1	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	TRIM26--MPP5	2	0	TRIM26	1123	chr6:30181082:-	MPP5	30301	chr14:67786947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	TRIM26->chr6:30152232-30181204:-,tripartite_motif_containing_26,MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	ZNF675--ARNTL2	2	0	ZNF675	4087	chr19:23844916:-	ARNTL2	30290	chr12:27553467:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	ZNF675->chr19:23708433-23870022:-,zinc_finger_protein_675,ARNTL2->aryl_hydrocarbon_receptor_nuclear_translocator_like_2,chr12:27485787-27576241:+	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	PBX3--MAPKAP1	1	2	PBX3	2279	chr9:128510902:+	MAPKAP1	35644	chr9:128305447:-	ONLY_REF_SPLICE	YES	131	793	0.02	0	0.0126	0.0252	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	LN443_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0378	FALSE	0	0	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	90	1	0.03	0.0126	0.0252	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN443_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0378	TRUE	64	13	3	59	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	C14orf64--SETD3	1	1	C14orf64	2423	chr14:98435610:-	SETD3	26709	chr14:99872927:-	ONLY_REF_SPLICE	YES	169	214	0.01	0.01	0.0126	0.0126	C14orf64->chr14:98391947-98444461:-,SETD3->SET_domain_containing_3,chr14:99864083-99947216:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	COL1A1--LGALS1	1	1	COL1A1	10626	chr17:48269149:-	LGALS1	25001	chr22:38074490:+	ONLY_REF_SPLICE	YES	2914	6921	0	0	0.0126	0.0126	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	LN443_CENTRAL_NERVOUS_SYSTEM	0	0	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	COL1A1--RP11-1212A22.1	1	1	COL1A1	11031	chr17:48268744:-	RP11-1212A22.1	27756	chr16:18441872:-	ONLY_REF_SPLICE	YES	2477	184	0	0.01	0.0126	0.0126	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,RP11-1212A22.1->chr16:18428257-18488396:-	LN443_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	DST--ZNF451	1	1	DST	4600	chr6:56716195:-	ZNF451	161727	chr6:57033221:+	ONLY_REF_SPLICE	YES	29	66	0.06	0.03	0.0126	0.0126	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,ZNF451->chr6:56951642-57035105:+,zinc_finger_protein_451	LN443_CENTRAL_NERVOUS_SYSTEM	0.03	0.06	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	KIAA0020--SMARCA2	1	1	KIAA0020	15375	chr9:2811361:-	SMARCA2	46735	chr9:2088500:+	ONLY_REF_SPLICE	YES	177	88	0.01	0.02	0.0126	0.0126	KIAA0020->chr9:2720469-2844241:-,SMARCA2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_2,chr9:2015342-2193624:+	LN443_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	PAWR--RP1-78O14.1	1	1	PAWR	14819	chr12:79988109:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	66	0	0.03	1	0.0126	0.0126	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0252	FALSE	0	4	0	4	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	PBX3--MAPKAP1	1	1	PBX3	2279	chr9:128510902:+	MAPKAP1	43593	chr9:128230388:-	ONLY_REF_SPLICE	NO	131	518	0.02	0	0.0126	0.0126	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	LN443_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0252	FALSE	0	0	0	3	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	RASSF8--SSPN	1	1	RASSF8	9484	chr12:26208379:+	SSPN	28668	chr12:26377226:+	ONLY_REF_SPLICE	YES	55	10	0.04	0.17	0.0126	0.0126	NEIGHBORS[42099],RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	LN443_CENTRAL_NERVOUS_SYSTEM	0.04	0.17	0.0252	FALSE	0	0	1	3	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	RASSF8--SSPN	1	1	RASSF8	3380	chr12:26148063:+	SSPN	28668	chr12:26377226:+	ONLY_REF_SPLICE	YES	8	10	0.2	0.17	0.0126	0.0126	NEIGHBORS[42099],RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	LN443_CENTRAL_NERVOUS_SYSTEM	0.17	0.2	0.0252	FALSE	0	0	0	3	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	RP11-163F15.1--RP11-215N21.1	1	1	RP11-163F15.1	1139	chr10:110321435:-	RP11-215N21.1	6576	chr10:109871360:-	ONLY_REF_SPLICE	YES	12	0	0.14	1	0.0126	0.0126	RP11-163F15.1->chr10:110307733-110321573:-,RP11-215N21.1->chr10:109517591-109871360:-	LN443_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.0252	TRUE	0	5	0	7	5	TRUE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0126	0.0126	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN443_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	FALSE	515	4851	409	746	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	RPL28--BNIP3L	1	1	RPL28	3704	chr19:55899416:+	BNIP3L	14539	chr8:26248759:+	ONLY_REF_SPLICE	YES	865	687	0	0	0.0126	0.0126	RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28,BNIP3L->BCL2/adenovirus_E1B_19kDa_interacting_protein_3-like,chr8:26240414-26363152:+	LN443_CENTRAL_NERVOUS_SYSTEM	0	0	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	SCARF2--PPP1R12C	1	1	SCARF2	1278	chr22:20791869:-	PPP1R12C	21571	chr19:55607703:-	ONLY_REF_SPLICE	YES	44	185	0.04	0.01	0.0126	0.0126	SCARF2->chr22:20778874-20792146:-,scavenger_receptor_class_F_member_2,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	LN443_CENTRAL_NERVOUS_SYSTEM	0.01	0.04	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	SCFD2--KDR	1	1	SCFD2	4269	chr4:54179803:-	KDR	16540	chr4:55987357:-	ONLY_REF_SPLICE	YES	92	149	0.02	0.01	0.0126	0.0126	SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,KDR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:55944644-55991756:-,kinase_insert_domain_receptor	LN443_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	SUN1--RANBP1	1	1	SUN1	12537	chr7:889240:+	RANBP1	48029	chr22:20113826:+	ONLY_REF_SPLICE	YES	249	1412	0.01	0	0.0126	0.0126	SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+,RANBP1->RAN_binding_protein_1,chr22:20103461-20114878:+	LN443_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000673
LN443_CENTRAL_NERVOUS_SYSTEM	YTHDF3--ASPH	1	1	YTHDF3	7936	chr8:64100303:+	ASPH	20643	chr8:62596747:-	ONLY_REF_SPLICE	YES	152	1486	0.01	0	0.0126	0.0126	YTHDF3->YTH_N6-methyladenosine_RNA_binding_protein_3,chr8:64081112-64125346:+,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	LN443_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000673
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	484	149	IGH@	94353	chr14:106330425:-	WHSC1	138040	chr4:1902353:+	ONLY_REF_SPLICE	YES	5	29	0.99	0.96	5.4932	1.6911	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.99	7.1843	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	399	149	IGH@	94754	chr14:106330024:-	WHSC1	138040	chr4:1902353:+	ONLY_REF_SPLICE	YES	4	29	0.99	0.95	4.5284	1.6911	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	0.99	6.2195	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	168	148	IGH@	93161	chr14:106331617:-	WHSC1	138040	chr4:1902353:+	ONLY_REF_SPLICE	NO	5	29	0.98	0.92	1.9067	1.6797	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	0.98	3.5864	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	122	45	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.3846	0.5107	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.8953	TRUE	508	994	45	981	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	81	149	IGH@	95370	chr14:106329408:-	WHSC1	138040	chr4:1902353:+	ONLY_REF_SPLICE	YES	4	29	0.98	0.89	0.9193	1.6911	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.98	2.6104	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-1158E12.3--DHRSX	99	44	RP5-1158E12.3	3112	chrX:45708809:-	DHRSX	14614	chrX:2209644:-	ONLY_REF_SPLICE	YES	5	31	0.97	0.82	1.1236	0.4994	RP5-1158E12.3->chrX:45707328-45710920:-,DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.97	1.623	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	24	163	IGH@	94353	chr14:106330425:-	WHSC1	134111	chr4:1893893:+	ONLY_REF_SPLICE	YES	5	0	0.97	1	0.2724	1.85	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	2.1224	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	21	163	IGH@	94754	chr14:106330024:-	WHSC1	134111	chr4:1893893:+	ONLY_REF_SPLICE	YES	4	0	0.98	1	0.2383	1.85	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	2.0883	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	21	157	IGH@	94353	chr14:106330425:-	WHSC1	135675	chr4:1895457:+	ONLY_REF_SPLICE	YES	5	4	0.97	0.98	0.2383	1.7819	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	0.98	2.0202	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	58	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	290	7	0.18	0.9	0.6583	0.0794	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.9	0.7377	TRUE	519	3926	326	965	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	13	157	IGH@	94754	chr14:106330024:-	WHSC1	135675	chr4:1895457:+	ONLY_REF_SPLICE	YES	4	4	0.98	0.98	0.1475	1.7819	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	0.98	1.9294	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	8	162	IGH@	93161	chr14:106331617:-	WHSC1	134111	chr4:1893893:+	ONLY_REF_SPLICE	NO	5	0	0.97	1	0.0908	1.8386	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	1.9294	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	6	156	IGH@	93161	chr14:106331617:-	WHSC1	135675	chr4:1895457:+	ONLY_REF_SPLICE	YES	5	4	0.97	0.98	0.0681	1.7705	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	0.98	1.8386	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	3	157	IGH@	95370	chr14:106329408:-	WHSC1	135675	chr4:1895457:+	ONLY_REF_SPLICE	YES	4	4	0.98	0.98	0.034	1.7819	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	0.98	1.8159	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	163	IGH@	95370	chr14:106329408:-	WHSC1	134111	chr4:1893893:+	ONLY_REF_SPLICE	NO	4	0	0.98	1	0.0113	1.85	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	1.8613	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	153	IGH@	94754	chr14:106330024:-	WHSC1	136858	chr4:1900948:+	ONLY_REF_SPLICE	YES	4	33	0.97	0.82	0.0113	1.7365	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.97	1.7478	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	153	IGH@	94353	chr14:106330425:-	WHSC1	136858	chr4:1900948:+	ONLY_REF_SPLICE	NO	5	33	0.97	0.82	0.0113	1.7365	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.97	1.7478	TRUE	0	0	0	2	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	30	24	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	1	0.92	0.98	0.3405	0.2724	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	0.98	0.6129	FALSE	515	4851	409	746	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	28	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3178	0.034	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3518	FALSE	462	80	0	856	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	27	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3064	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3064	TRUE	0	0	0	518	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	10	50	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	5035	0	0.01	1	0.1135	0.5675	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.681	FALSE	344	827	44	306	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	13	30	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	8	5	0.84	0.9	0.1475	0.3405	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	0.9	0.488	FALSE	189	492	56	216	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	69	MT-ND4	1117	chrM:10876:+	MT-ND4L	5510	chrM:10601:+	INCL_NON_REF_SPLICE	YES	9	0	0.89	1	0.034	0.7831	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.8171	FALSE	344	826	44	306	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	47	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	8	0	0.87	1	0.0794	0.5334	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	0.6128	FALSE	344	821	44	306	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	14	18	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	67	30	0.32	0.52	0.1589	0.2043	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.52	0.3632	TRUE	267	562	48	632	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	15	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	66	32	0.27	0.44	0.1702	0.1135	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.44	0.2837	TRUE	267	562	48	632	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--B2M	17	2	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	4624	0	0	1	0.1929	0.0227	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2156	TRUE	0	0	0	28	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	51	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	29	0	0.65	1	0.0454	0.5788	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	0.6242	FALSE	344	827	44	306	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	9	31	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.89	1	0.1021	0.3518	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.4539	FALSE	407	2205	196	549	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	38	MT-ND4	1756	chrM:11515:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	4086	0	0.01	1	0.0567	0.4313	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.488	FALSE	344	827	44	306	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	12	8	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1362	0.0908	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.227	TRUE	0	1	0	84	1	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	31	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	8	42	0.81	0.45	0.0454	0.3518	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.81	0.3972	FALSE	189	492	56	216	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	23	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	7	2	0.81	0.94	0.0681	0.261	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.94	0.3291	FALSE	189	492	56	216	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	33	MT-CO3	1205	chrM:9411:+	MT-ATP6	5179	chrM:8921:+	INCL_NON_REF_SPLICE	YES	11	44	0.77	0.45	0.034	0.3745	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.77	0.4085	FALSE	189	492	56	216	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	17	MT-ND4	2122	chrM:11881:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	8440	0	0	1	0.0794	0.1929	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2723	FALSE	315	784	43	302	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	11	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1248	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1248	FALSE	189	492	56	216	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1248	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1248	FALSE	499	1288	110	792	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	30	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	8	5	0.8	0.87	0.034	0.3405	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.87	0.3745	FALSE	189	492	56	216	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	24	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	6	4	0.82	0.88	0.0454	0.2724	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.88	0.3178	FALSE	189	492	56	216	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	10	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1135	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1135	FALSE	189	492	56	216	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	24	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	6	4	0.82	0.88	0.0454	0.2724	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.88	0.3178	FALSE	189	492	56	216	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	10	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1135	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1135	TRUE	0	0	0	434	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLX1B--NEK1	9	4	SLX1B	4431	chr16:29469336:+	NEK1	17221	chr4:170502053:-	ONLY_REF_SPLICE	YES	37	33	0.26	0.28	0.1021	0.0454	SLX1B->SLX1_homolog_B,_structure-specific_endonuclease_subunit,chr16:29465822-29469540:+,NEK1->NIMA_related_kinase_1,chr4:170314426-170533780:-	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.28	0.1475	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	35	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0113	0.3972	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4085	FALSE	192	492	57	212	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WHSC1--IGHV5-78	9	2	WHSC1	9027	chr4:1906105:+	IGHV5-78	47037	chr14:107259632:-	ONLY_REF_SPLICE	YES	829	0	0.01	1	0.1021	0.0227	WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,IGHV5-78->chr14:107259338-107259632:-,immunoglobulin_heavy_variable_5-78_(pseudogene)	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1248	TRUE	0	0	0	1	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	9	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1048	0	0.01	1	0.1021	0.0113	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1134	FALSE	0	0	0	189	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	7	8	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0794	0.0908	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1702	TRUE	0	1	0	84	1	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1021	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1021	FALSE	499	1288	110	792	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-1158E12.3--DHRSX	1	32	RP5-1158E12.3	1137	chrX:45710784:-	DHRSX	14614	chrX:2209644:-	ONLY_REF_SPLICE	YES	17	31	0.66	0.52	0.0113	0.3632	RP5-1158E12.3->chrX:45707328-45710920:-,DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.66	0.3745	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0908	0.0113	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1021	FALSE	499	1288	110	792	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	28	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	1	1	0.97	0.0113	0.3178	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.3291	FALSE	467	2173	244	435	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	3	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	8	0	0.56	1	0.0794	0.034	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.1134	FALSE	189	492	56	216	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRA2B--KNG1	6	5	TRA2B	1312	chr3:185655613:-	KNG1	30677	chr3:186456888:+	ONLY_REF_SPLICE	YES	678	0	0.02	1	0.0681	0.0567	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),KNG1->chr3:186435065-186461743:+,kininogen_1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.1248	TRUE	0	0	0	1	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0794	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0794	FALSE	189	492	56	216	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	5	7	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0.0794	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1361	TRUE	0	1	0	84	1	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	6	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	10	0.9	0.47	0.0681	0.034	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.9	0.1021	FALSE	16	356	14	466	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP1M1--RAB8A	6	2	AP1M1	1491	chr19:16308879:+	RAB8A	19323	chr19:16229036:+	ONLY_REF_SPLICE	YES	9	234	0.47	0.03	0.0681	0.0227	LOCAL_REARRANGEMENT:+:[63345],AP1M1->adaptor_related_protein_complex_1_mu_1_subunit,chr19:16308389-16346160:+,RAB8A->Oncogene{Bushman},RAB8A,_member_RAS_oncogene_family,chr19:16222439-16245044:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.47	0.0908	TRUE	0	0	0	1	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A5--MT-ND4L	6	2	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2061	0	0	1	0.0681	0.0227	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0908	FALSE	0	0	0	23	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--PTMA	6	1	AC096579.7	4062	chr2:89156856:-	PTMA	10062	chr2:232573242:+	INCL_NON_REF_SPLICE	YES	6237	17	0	0.29	0.0681	0.0113	AC096579.7->chr2:89130700-89165653:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.29	0.0794	FALSE	0	0	0	3	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	13	MT-CO3	1020	chrM:9226:+	MT-ATP6	5206	chrM:8948:+	INCL_NON_REF_SPLICE	YES	3	42	0.84	0.28	0.034	0.1475	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.84	0.1815	FALSE	189	492	56	216	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0681	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0681	FALSE	499	1288	110	792	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	11	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	608	0	0.02	1	0.034	0.1248	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.1588	FALSE	344	827	44	306	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0.0227	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0794	FALSE	462	80	0	856	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	5	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0567	0.0227	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0794	FALSE	416	2512	207	587	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	4	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	17	0	0.32	1	0.0454	0.0454	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.0908	FALSE	344	826	44	306	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	4	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	28	0	0.22	1	0.0454	0.0454	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.0908	FALSE	344	827	44	306	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMBIM4--NELL2	2	11	TMBIM4	1218	chr12:66563635:-	NELL2	20478	chr12:45275622:-	ONLY_REF_SPLICE	YES	224	0	0.05	1	0.0227	0.1248	TMBIM4->chr12:66517697-66563765:-,chr12:66517709-66563852:-,transmembrane_BAX_inhibitor_motif_containing_4,NELL2->chr12:44902058-45315631:-,neural_EGFL_like_2	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.1475	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHERP--SLC35E1	4	0	CHERP	1661	chr19:16652681:-	SLC35E1	28326	chr19:16666208:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0454	0	LOCAL_REARRANGEMENT:-:[7301],CHERP->calcium_homeostasis_endoplasmic_reticulum_protein,chr19:16628700-16653341:-,SLC35E1->chr19:16660642-16683193:-,solute_carrier_family_35_member_E1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0454	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTDP1--NFATC1	4	0	CTDP1	18072	chr18:77496521:+	NFATC1	41198	chr18:77287528:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0454	0	GTEx_FI:{Blood=[count:1=pct:0.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},CTDP1->CTD_phosphatase_subunit_1,chr18:77439801-77514510:+,NFATC1->Oncogene{Bushman},chr18:77155856-77289325:+,nuclear_factor_of_activated_T-cells_1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0454	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0454	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0454	FALSE	462	80	0	856	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCARB1--UBC	4	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0454	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0454	TRUE	55	66	6	101	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PBXIP1--MT-CO3	3	3	PBXIP1	8195	chr1:154917518:-	MT-CO3	12376	chrM:9421:+	INCL_NON_REF_SPLICE	YES	1238	9096	0	0	0.034	0.034	PBXIP1->chr1:154916552-154928599:-,pre-B-cell_leukemia_homeobox_interacting_protein_1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.068	FALSE	0	0	0	1	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	2	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	6	0	0.45	1	0.034	0.0227	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	1	0.0567	FALSE	189	492	56	216	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHSY3--HSPA8P4	3	1	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	12	0	0.25	1	0.034	0.0113	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0453	FALSE	89	26	1	44	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3081	0	0	1	0.034	0.0113	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0453	FALSE	13	9	0	364	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3084	0	0	1	0.034	0.0113	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0453	FALSE	13	9	0	364	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	3	1	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	1783	1	0	0.034	0.0113	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0453	FALSE	26	124	4	93	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF6--UQCC1	3	0	EIF6	1260	chr20:33872529:-	UQCC1	25064	chr20:33894582:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	LOCAL_REARRANGEMENT:-:[17581],EIF6->chr20:33866714-33872788:-,eukaryotic_translation_initiation_factor_6,UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	FALSE	344	821	44	306	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	0	MT-ND4	1032	chrM:10791:+	MT-ND4L	5641	chrM:10732:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	FALSE	344	821	44	306	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A5--ATP5G2	3	0	SLC7A5	8052	chr16:87871490:-	ATP5G2	21321	chr12:54066421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	7	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--NPM1	3	0	TXNDC5	2343	chr6:7910752:-	NPM1	18924	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	0	0	5	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMBIM4--NELL2	1	6	TMBIM4	1218	chr12:66563635:-	NELL2	22736	chr12:45269683:-	ONLY_REF_SPLICE	NO	224	4	0.03	0.64	0.0113	0.0681	TMBIM4->chr12:66517697-66563765:-,chr12:66517709-66563852:-,transmembrane_BAX_inhibitor_motif_containing_4,NELL2->chr12:44902058-45315631:-,neural_EGFL_like_2	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.64	0.0794	TRUE	0	0	0	1	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	5	IGH@	95370	chr14:106329408:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	NO	4	790	0.6	0.01	0.0113	0.0567	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.6	0.068	FALSE	0	0	0	3	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	5	IGH@	94353	chr14:106330425:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	NO	5	790	0.55	0.01	0.0113	0.0567	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.55	0.068	FALSE	0	0	0	3	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	5	IGH@	93161	chr14:106331617:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	NO	5	790	0.55	0.01	0.0113	0.0567	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.55	0.068	FALSE	0	0	0	3	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	5	IGH@	94754	chr14:106330024:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	NO	4	790	0.6	0.01	0.0113	0.0567	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.6	0.068	FALSE	0	0	0	3	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	10	0.38	0.23	0.0227	0.0113	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.38	0.034	FALSE	0	48	1	163	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWOX--RP11-319G9.5	2	1	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	46	0	0.06	1	0.0227	0.0113	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.034	FALSE	33	33	2	19	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKS1A--C6orf106	2	0	ANKS1A	1335	chr6:34857376:+	C6orf106	32617	chr6:34622556:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+,C6orf106->chr6:34555065-34664636:-,chromosome_6_open_reading_frame_106	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--PGBD2	2	0	CPSF6	11046	chr12:69656342:+	PGBD2	23586	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Adipose_-_Subcutaneous=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	7	0	6	2	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2215E18.1--CAST	2	0	CTD-2215E18.1	1130	chr5:96424908:+	CAST	42265	chr5:96097978:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	CTD-2215E18.1->chr5:96424779-96519354:+,CAST->calpastatin,chr5:95860971-96115299:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--HSPA9	2	0	DANCR	1530	chr4:53579126:+	HSPA9	16239	chr5:137895780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DEF6--SRP9	2	0	DEF6	1135	chr6:35265729:+	SRP9	13896	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	DEF6->DEF6,_guanine_nucleotide_exchange_factor,chr6:35265595-35289548:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC7--RAB5C	2	0	DNAJC7	3237	chr17:40169358:-	RAB5C	37626	chr17:40278866:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	DNAJC7->DnaJ_heat_shock_protein_family_(Hsp40)_member_C7,chr17:40128451-40173394:-,RAB5C->Oncogene{Bushman},RAB5C,_member_RAS_oncogene_family,chr17:40276994-40307035:-	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTG1--HEATR2	2	0	MTG1	7895	chr10:135216277:+	HEATR2	21769	chr7:801390:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	MTG1->chr10:135207598-135234811:+,mitochondrial_ribosome_associated_GTPase_1,HEATR2->chr7:766338-829190:+	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NVL--LIN9	2	0	NVL	2391	chr1:224514093:-	LIN9	41723	chr1:226455791:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NVL->chr1:224415036-224518089:-,nuclear_VCP-like,LIN9->chr1:226418850-226497570:-,lin-9_DREAM_MuvB_core_complex_component	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAIP2B--CHST15	2	0	PAIP2B	1156	chr2:71454058:-	CHST15	15634	chr10:125806240:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	PAIP2B->chr2:71409869-71454213:-,poly(A)_binding_protein_interacting_protein_2B,CHST15->carbohydrate_(N-acetylgalactosamine_4-sulfate_6-O)_sulfotransferase_15,chr10:125767184-125853206:-	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPCDC--PSPC1P1	2	0	PPCDC	9525	chr15:75352087:+	PSPC1P1	18348	chr13:19775962:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	PPCDC->chr15:75315896-75409803:+,phosphopantothenoylcysteine_decarboxylase,PSPC1P1->chr13:19775777-19801572:-,paraspeckle_component_1_pseudogene_1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-387D10.2--MCTP2	2	0	RP11-387D10.2	3420	chr15:91256398:-	MCTP2	16536	chr15:94882519:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RP11-387D10.2->chr15:91163239-91260372:-,MCTP2->chr15:94774767-95023632:+,multiple_C2_domains,_transmembrane_2	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTN3--PTGES3	2	0	RTN3	1333	chr11:63449250:+	PTGES3	20865	chr12:57066849:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RTN3->chr11:63448918-63527363:+,reticulon_3,PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SKA3--SEPT7P2	2	0	SKA3	1228	chr13:21750514:-	SEPT7P2	24489	chr7:45776509:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	SKA3->chr13:21727734-21750741:-,spindle_and_kinetochore_associated_complex_subunit_3,SEPT7P2->chr7:45763379-45808617:-,septin_7_pseudogene_2	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM106A--SSU72	2	0	TMEM106A	5687	chr17:41369331:+	SSU72	12810	chr1:1500296:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	TMEM106A->chr17:41363854-41372061:+,transmembrane_protein_106A,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP6NL--SEPHS1	2	0	USP6NL	1312	chr10:11653442:-	SEPHS1	38816	chr10:13380808:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	USP6NL->USP6_N-terminal_like,chr10:11495945-11653753:-,SEPHS1->chr10:13359424-13390297:-,selenophosphate_synthetase_1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF215--PPP2CB	2	0	ZNF215	2404	chr11:6949038:+	PPP2CB	18563	chr8:30657271:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ZNF215->chr11:6947635-7005863:+,zinc_finger_protein_215,PPP2CB->chr8:30631973-30671830:-,protein_phosphatase_2_catalytic_subunit_beta	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0113	0.0227	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	FALSE	93	270	15	244	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WHSC1--IGHV5-78	1	2	WHSC1	28109	chr4:1952930:+	IGHV5-78	47037	chr14:107259632:-	ONLY_REF_SPLICE	NO	392	0	0.01	1	0.0113	0.0227	WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,IGHV5-78->chr14:107259338-107259632:-,immunoglobulin_heavy_variable_5-78_(pseudogene)	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.034	FALSE	0	0	0	1	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHCHD3--EXOC4	1	1	CHCHD3	7933	chr7:132659929:-	EXOC4	25050	chr7:132990631:+	ONLY_REF_SPLICE	YES	437	144	0	0.01	0.0113	0.0113	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0226	FALSE	0	0	0	2	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COL4A4--RHBDD1	1	1	COL4A4	46928	chr2:227872734:-	RHBDD1	69153	chr2:227860147:+	ONLY_REF_SPLICE	YES	11	58	0.15	0.03	0.0113	0.0113	GTEx_FI:{Muscle=[count:1=pct:0.4],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=4;pct=0.05%;dist=Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[3496],COL4A4->chr2:227867427-228028829:-,collagen_type_IV_alpha_4,RHBDD1->chr2:227700297-227863931:+,rhomboid_domain_containing_1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.15	0.0226	TRUE	1	0	0	1	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COL4A4--RHBDD1	1	1	COL4A4	43335	chr2:227886764:-	RHBDD1	69153	chr2:227860147:+	ONLY_REF_SPLICE	YES	17	58	0.11	0.03	0.0113	0.0113	GTEx_FI:{Muscle=[count:1=pct:0.4],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=4;pct=0.05%;dist=Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[3496],COL4A4->chr2:227867427-228028829:-,collagen_type_IV_alpha_4,RHBDD1->chr2:227700297-227863931:+,rhomboid_domain_containing_1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.11	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF6--UQCC1	1	1	EIF6	1810	chr20:33871979:-	UQCC1	25064	chr20:33894582:-	ONLY_REF_SPLICE	YES	406	34	0	0.06	0.0113	0.0113	LOCAL_REARRANGEMENT:-:[17581],EIF6->chr20:33866714-33872788:-,eukaryotic_translation_initiation_factor_6,UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JARID2--DTNBP1	1	1	JARID2	1289	chr6:15246815:+	DTNBP1	33382	chr6:15627706:-	ONLY_REF_SPLICE	YES	28	94	0.07	0.02	0.0113	0.0113	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=7;pct=0.08%;dist=Lung=1,Brain_-_Hippocampus=1,Artery_-_Coronary=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:+:-:[780],JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,DTNBP1->chr6:15523032-15663289:-,dystrobrevin_binding_protein_1	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.07	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MBNL1--SLC7A5	1	1	MBNL1	3666	chr3:151986881:+	SLC7A5	30676	chr16:87885455:-	ONLY_REF_SPLICE	YES	665	1861	0	0	0.0113	0.0113	MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP6R2--MYO5C	1	1	PPP6R2	22096	chr22:50879455:+	MYO5C	56449	chr15:52524882:-	ONLY_REF_SPLICE	YES	61	1	0.03	0.67	0.0113	0.0113	PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2,MYO5C->chr15:52484519-52587995:-,myosin_VC	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.67	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-689B22.2--CORO1C	1	1	RP11-689B22.2	3353	chr12:109029822:+	CORO1C	19400	chr12:109048186:-	ONLY_REF_SPLICE	YES	20	241	0.09	0.01	0.0113	0.0113	LOCAL_INVERSION:+:-:[3791],RP11-689B22.2->chr12:109022463-109035094:+,CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.09	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000541
KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMBIM4--NELL2	1	1	TMBIM4	1218	chr12:66563635:-	NELL2	25816	chr12:45209919:-	ONLY_REF_SPLICE	YES	224	21	0.01	0.09	0.0113	0.0113	TMBIM4->chr12:66517697-66563765:-,chr12:66517709-66563852:-,transmembrane_BAX_inhibitor_motif_containing_4,NELL2->chr12:44902058-45315631:-,neural_EGFL_like_2	KMS34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.09	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000541
COV362_OVARY	DEDD--UFC1	137	36	DEDD	2874	chr1:161100605:-	UFC1	12773	chr1:161126740:+	ONLY_REF_SPLICE	YES	57	612	0.75	0.22	1.3556	0.3562	LOCAL_INVERSION:-:+:[20088],DEDD->chr1:161090764-161102478:-,death_effector_domain_containing,UFC1->chr1:161122566-161128646:+,ubiquitin-fold_modifier_conjugating_enzyme_1	COV362_OVARY	0.22	0.75	1.7118	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	TIMM23B--LINC00843	113	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1181	0.2969	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COV362_OVARY	1	1	1.415	TRUE	508	994	45	981	0	FALSE	ACH-000278
COV362_OVARY	HKR1--SPIDR	85	22	HKR1	14380	chr19:37838774:+	SPIDR	59742	chr8:48647869:+	ONLY_REF_SPLICE	YES	24	48	0.82	0.69	0.8411	0.2177	HKR1->HKR1,_GLI-Kruppel_zinc_finger_family_member,Oncogene{Bushman},chr19:37803739-37860267:+,SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair	COV362_OVARY	0.69	0.82	1.0588	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	TIMM23--RP11-464F9.1	72	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	236	3	0.24	0.96	0.7124	0.0297	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	COV362_OVARY	0.24	0.96	0.7421	TRUE	519	3926	326	965	0	FALSE	ACH-000278
COV362_OVARY	PBX1--RP11-284F21.7	58	21	PBX1	4894	chr1:164532548:+	RP11-284F21.7	51987	chr1:156616946:-	ONLY_REF_SPLICE	YES	55	4	0.59	0.95	0.5739	0.2078	PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1,RP11-284F21.7->chr1:156616299-156631216:-	COV362_OVARY	0.59	0.95	0.7817	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	EPN1--AP001596.6	53	28	EPN1	4441	chr19:56190221:+	AP001596.6	26794	chr21:27843070:+	ONLY_REF_SPLICE	YES	616	1	0.12	0.99	0.5244	0.2771	EPN1->chr19:56186592-56221224:+,epsin_1,AP001596.6->chr21:27750871-27844017:+	COV362_OVARY	0.12	0.99	0.8015	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	EPN1--AP001597.1	47	9	EPN1	4441	chr19:56190221:+	AP001597.1	19927	chr21:27875901:+	ONLY_REF_SPLICE	YES	616	0	0.08	1	0.4651	0.0891	EPN1->chr19:56186592-56221224:+,epsin_1,AP001597.1->chr21:27765954-27941571:+	COV362_OVARY	0.08	1	0.5542	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	MT-TA--MT-TC	47	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4651	0.0495	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COV362_OVARY	1	1	0.5146	FALSE	462	80	0	856	0	FALSE	ACH-000278
COV362_OVARY	MT-ND6--MT-TE	45	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4453	0.0297	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV362_OVARY	1	1	0.475	FALSE	499	1288	110	792	0	FALSE	ACH-000278
COV362_OVARY	ZNF654--HMGB2	45	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4453	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	COV362_OVARY	1	1	0.4453	TRUE	0	0	0	518	0	FALSE	ACH-000278
COV362_OVARY	RP11-123O10.4--GRIP1	30	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	2	1	0.94	0.2969	0.0396	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COV362_OVARY	0.94	1	0.3365	FALSE	416	2512	207	587	0	FALSE	ACH-000278
COV362_OVARY	NPM1P24--SET	30	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2969	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	COV362_OVARY	1	1	0.2969	TRUE	0	0	0	434	0	FALSE	ACH-000278
COV362_OVARY	MT-ND6--MT-TE	23	19	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.2276	0.188	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV362_OVARY	0.95	1	0.4156	FALSE	499	1288	110	792	0	FALSE	ACH-000278
COV362_OVARY	MT-ND6--MT-TE	19	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.188	0.0297	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV362_OVARY	1	1	0.2177	FALSE	499	1288	110	792	0	FALSE	ACH-000278
COV362_OVARY	ARF1--MT-CO1	19	1	ARF1	6843	chr1:228285395:+	MT-CO1	11358	chrM:5901:+	INCL_NON_REF_SPLICE	YES	974	0	0.02	1	0.188	0.0099	ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COV362_OVARY	0.02	1	0.1979	FALSE	0	0	0	7	0	FALSE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	5	54	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	8	0.92	0.88	0.0495	0.5343	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	0.88	0.92	0.5838	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	3	61	MT-CO3	1434	chrM:9640:+	MT-ATP6	4916	chrM:8658:+	INCL_NON_REF_SPLICE	YES	4	23	0.94	0.74	0.0297	0.6036	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	0.74	0.94	0.6333	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	3	59	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	9	0	0.87	1	0.0297	0.5838	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	0.87	1	0.6135	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	4	54	MT-CO3	1126	chrM:9332:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	5	8	0.92	0.88	0.0396	0.5343	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	0.88	0.92	0.5739	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	STAG1--RP11-731C17.1	16	5	STAG1	1184	chr3:136471037:-	RP11-731C17.1	45584	chr3:136527876:-	INCL_NON_REF_SPLICE	YES	77	0	0.21	1	0.1583	0.0495	LOCAL_REARRANGEMENT:-:[56173],STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,RP11-731C17.1->chr3:136527393-136528465:-	COV362_OVARY	0.21	1	0.2078	TRUE	0	1	0	2	1	TRUE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	3	55	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	5	45	0.92	0.56	0.0297	0.5442	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	0.56	0.92	0.5739	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	3	54	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	21	0.98	0.73	0.0297	0.5343	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	0.73	0.98	0.564	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	ARF1--MT-CO1	14	9	ARF1	6856	chr1:228285408:+	MT-CO1	11371	chrM:5914:+	INCL_NON_REF_SPLICE	YES	980	0	0.02	1	0.1385	0.0891	ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COV362_OVARY	0.02	1	0.2276	FALSE	0	0	0	7	0	FALSE	ACH-000278
COV362_OVARY	MT-TA--MT-TC	15	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1484	0.0495	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COV362_OVARY	1	1	0.1979	FALSE	462	80	0	856	0	FALSE	ACH-000278
COV362_OVARY	FTH1P8--S100A6	16	0	FTH1P8	1489	chrX:147134241:+	S100A6	5491	chr1:153507744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1583	0	FTH1P8->chrX:147133753-147134266:+,ferritin,_heavy_polypeptide_1_pseudogene_8,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	COV362_OVARY	1	1	0.1583	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	3	50	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	8	0.98	0.87	0.0297	0.4948	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	0.87	0.98	0.5245	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	NRIP1--AF127936.7	13	5	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.78	1	0.1286	0.0495	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COV362_OVARY	0.78	1	0.1781	FALSE	292	1546	117	613	0	FALSE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	4	39	MT-CO3	1038	chrM:9244:+	MT-ATP6	5225	chrM:8967:+	INCL_NON_REF_SPLICE	YES	1	12	0.98	0.78	0.0396	0.3859	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	0.78	0.98	0.4255	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	HSP90AB1--MT-RNR2	13	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3205	0	0	1	0.1286	0.0099	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COV362_OVARY	0	1	0.1385	FALSE	13	9	0	364	0	FALSE	ACH-000278
COV362_OVARY	RSF1--TENM4	12	5	RSF1	16058	chr11:77404552:-	TENM4	82076	chr11:78387432:-	ONLY_REF_SPLICE	YES	74	37	0.19	0.31	0.1187	0.0495	RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	COV362_OVARY	0.19	0.31	0.1682	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	SHISA9--U91319.1	12	4	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	16	0	0.5	1	0.1187	0.0396	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	COV362_OVARY	0.5	1	0.1583	FALSE	4	37	0	19	0	FALSE	ACH-000278
COV362_OVARY	MT-ND6--MT-TE	6	23	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0594	0.2276	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV362_OVARY	0.94	1	0.287	FALSE	499	1288	110	792	0	FALSE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	11	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.71	1	0.1088	0.0099	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	0.71	1	0.1187	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	RP11-444D3.1--SOX5	10	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	9	1	0.61	0.099	0.0396	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	COV362_OVARY	0.61	1	0.1386	TRUE	477	1352	189	275	0	FALSE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	3	30	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	8	1	0.8	0.0297	0.2969	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	0.8	1	0.3266	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	RP11-680G10.1--GSE1	9	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.6	0.0891	0.0594	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COV362_OVARY	0.6	1	0.1485	TRUE	458	1351	185	561	0	FALSE	ACH-000278
COV362_OVARY	ARHGAP42--LYPD6	9	3	ARHGAP42	1180	chr11:100558563:+	LYPD6	42014	chr2:150294152:+	ONLY_REF_SPLICE	YES	7	34	0.63	0.26	0.0891	0.0297	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,LYPD6->LY6/PLAUR_domain_containing_6,chr2:150186499-150330662:+	COV362_OVARY	0.26	0.63	0.1188	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	MT-ND6--MT-TE	7	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0693	0.099	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV362_OVARY	1	1	0.1683	FALSE	499	1288	110	792	0	FALSE	ACH-000278
COV362_OVARY	MT-ND6--MT-TE	4	22	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0396	0.2177	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV362_OVARY	0.93	1	0.2573	FALSE	499	1288	110	792	0	FALSE	ACH-000278
COV362_OVARY	MT-ND6--MT-TE	4	21	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.0396	0.2078	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV362_OVARY	0.89	1	0.2474	FALSE	499	1288	110	792	0	FALSE	ACH-000278
COV362_OVARY	FTH1--ACTB	8	3	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	4463	1	0	0.92	0.0792	0.0297	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	COV362_OVARY	0	0.92	0.1089	TRUE	1	0	0	97	0	FALSE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	6	10	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	5	0	0.76	1	0.0594	0.099	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	0.76	1	0.1584	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	RP11-96H19.1--RP11-446N19.1	7	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0693	0.0594	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COV362_OVARY	0.93	1	0.1287	FALSE	515	4851	409	746	0	FALSE	ACH-000278
COV362_OVARY	HSP90AB1--MT-RNR2	8	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3209	0	0	1	0.0792	0.0099	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COV362_OVARY	0	1	0.0891	FALSE	13	9	0	364	0	FALSE	ACH-000278
COV362_OVARY	EPN1--AP001596.6	1	28	EPN1	4441	chr19:56190221:+	AP001596.6	25458	chr21:27790262:+	ONLY_REF_SPLICE	YES	616	0	0.04	1	0.0099	0.2771	EPN1->chr19:56186592-56221224:+,epsin_1,AP001596.6->chr21:27750871-27844017:+	COV362_OVARY	0.04	1	0.287	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	8	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0792	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	1	1	0.0792	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	MT-ND6--MT-TE	3	19	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0297	0.188	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV362_OVARY	0.92	1	0.2177	FALSE	499	1288	110	792	0	FALSE	ACH-000278
COV362_OVARY	NRIP1--AF127936.7	6	7	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	29	0	0.31	1	0.0594	0.0693	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COV362_OVARY	0.31	1	0.1287	FALSE	125	705	46	456	0	FALSE	ACH-000278
COV362_OVARY	RP11-680G10.1--GSE1	7	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	35	1	0.22	0.0693	0.0297	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COV362_OVARY	0.22	1	0.099	TRUE	465	1949	224	605	0	FALSE	ACH-000278
COV362_OVARY	C15orf57--CBX3	6	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	56	50	0.18	0.19	0.0594	0.0594	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COV362_OVARY	0.18	0.19	0.1188	TRUE	267	562	48	632	0	FALSE	ACH-000278
COV362_OVARY	RP11-120D5.1--MID1	7	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	32	0.89	0.2	0.0693	0.0099	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	COV362_OVARY	0.2	0.89	0.0792	FALSE	16	356	14	466	0	FALSE	ACH-000278
COV362_OVARY	RPSAP52--HMGA2	7	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	6	246	0.57	0.03	0.0693	0.0099	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	COV362_OVARY	0.03	0.57	0.0792	FALSE	0	59	0	125	0	FALSE	ACH-000278
COV362_OVARY	RORA--ANXA2	5	6	RORA	1267	chr15:61521252:-	ANXA2	63129	chr15:60649435:-	ONLY_REF_SPLICE	YES	3	3629	0.79	0	0.0495	0.0594	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	COV362_OVARY	0	0.79	0.1089	FALSE	0	0	0	1	0	FALSE	ACH-000278
COV362_OVARY	SDF4--MT-ND4L	6	1	SDF4	2252	chr1:1164215:-	MT-ND4L	13838	chrM:10471:+	INCL_NON_REF_SPLICE	YES	408	0	0.02	1	0.0594	0.0099	SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COV362_OVARY	0.02	1	0.0693	FALSE	0	0	0	7	0	FALSE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	6	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	1	1	0.0594	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	NRIP1--AF127936.7	3	11	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	27	0	0.34	1	0.0297	0.1088	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COV362_OVARY	0.34	1	0.1385	FALSE	164	806	69	479	0	FALSE	ACH-000278
COV362_OVARY	C15orf57--CBX3	5	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	53	51	0.12	0.12	0.0495	0.0198	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COV362_OVARY	0.12	0.12	0.0693	TRUE	267	562	48	632	0	FALSE	ACH-000278
COV362_OVARY	RP4-565E6.1--HYDIN	5	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0495	0.0198	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	COV362_OVARY	1	1	0.0693	TRUE	456	1387	91	133	0	FALSE	ACH-000278
COV362_OVARY	FTH1--ACTB	5	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	4176	1	0	0.86	0.0495	0.0099	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	COV362_OVARY	0	0.86	0.0594	FALSE	1	0	0	97	0	FALSE	ACH-000278
COV362_OVARY	FTH1--ACTB	5	1	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	3702	1	0	0.86	0.0495	0.0099	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	COV362_OVARY	0	0.86	0.0594	FALSE	1	0	0	97	0	FALSE	ACH-000278
COV362_OVARY	KANSL1--LRRC37A2	5	1	KANSL1	8599	chr17:44230270:-	LRRC37A2	40568	chr17:44617542:+	ONLY_REF_SPLICE	YES	33	17	0.15	0.26	0.0495	0.0099	GTEx_FI:{Brain=[count:2=pct:0.3]},KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	COV362_OVARY	0.15	0.26	0.0594	TRUE	0	0	0	2	0	TRUE	ACH-000278
COV362_OVARY	LINC00839--KIAA1279	5	1	LINC00839	2604	chr10:42972890:+	KIAA1279	12965	chr10:70764802:+	ONLY_REF_SPLICE	YES	10	41	0.38	0.13	0.0495	0.0099	LINC00839->chr10:42970991-42990784:+,long_intergenic_non-protein_coding_RNA_839,KIAA1279->chr10:70748487-70776738:+	COV362_OVARY	0.13	0.38	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	4	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	5	0	0.62	1	0.0396	0.0396	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	0.62	1	0.0792	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	5	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	1	1	0.0495	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COV362_OVARY	1	1	0.0495	FALSE	462	80	0	856	0	FALSE	ACH-000278
COV362_OVARY	SLC3A2--POLR2G	5	0	SLC3A2	7935	chr11:62650471:+	POLR2G	16767	chr11:62529267:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0495	0	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[89336],SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2,POLR2G->chr11:62529016-62534182:+,polymerase_(RNA)_II_subunit_G	COV362_OVARY	1	1	0.0495	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	3	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.0297	0.0594	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	0.64	1	0.0891	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	MT-ND6--MT-TE	3	6	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0.0594	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV362_OVARY	1	1	0.0891	FALSE	499	1288	110	792	0	FALSE	ACH-000278
COV362_OVARY	RP1-178F15.4--RPLP1	4	2	RP1-178F15.4	1301	chr1:153606573:-	RPLP1	7020	chr15:69745182:+	INCL_NON_REF_SPLICE	YES	53	0	0.1	1	0.0396	0.0198	RP1-178F15.4->chr1:153603914-153606873:-,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	COV362_OVARY	0.1	1	0.0594	TRUE	0	1	0	1	1	TRUE	ACH-000278
COV362_OVARY	CTD-2337A12.1--CAST	4	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	47	1	0.1	0.0396	0.0099	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	COV362_OVARY	0.1	1	0.0495	TRUE	347	1186	183	220	0	FALSE	ACH-000278
COV362_OVARY	FTH1--ACTB	4	1	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	4187	1	0	0.83	0.0396	0.0099	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	COV362_OVARY	0	0.83	0.0495	FALSE	1	0	0	97	0	FALSE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	4	1	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	9	0	0.36	1	0.0396	0.0099	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	0.36	1	0.0495	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	GPR141--NME8	3	4	GPR141	2513	chr7:37725186:+	NME8	16484	chr7:37896876:+	ONLY_REF_SPLICE	YES	46	0	0.13	1	0.0297	0.0396	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	COV362_OVARY	0.13	1	0.0693	FALSE	7	5	0	3	0	FALSE	ACH-000278
COV362_OVARY	MT-CO3--MT-ATP6	4	0	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COV362_OVARY	1	1	0.0396	FALSE	189	492	56	216	0	FALSE	ACH-000278
COV362_OVARY	RP11-444D3.1--SOX5	3	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	9	1	0.4	0.0297	0.0297	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	COV362_OVARY	0.4	1	0.0594	TRUE	274	363	69	150	0	FALSE	ACH-000278
COV362_OVARY	CMTM8--CMTM7	3	2	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	35	341	0.12	0.01	0.0297	0.0198	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	COV362_OVARY	0.01	0.12	0.0495	FALSE	118	557	29	88	0	FALSE	ACH-000278
COV362_OVARY	LY6E--S100A6	3	2	LY6E	4687	chr8:144103227:+	S100A6	9963	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	1370	8	0	0.38	0.0297	0.0198	LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	COV362_OVARY	0	0.38	0.0495	FALSE	0	0	0	7	0	FALSE	ACH-000278
COV362_OVARY	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.89	1	0.0198	0.0594	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COV362_OVARY	0.89	1	0.0792	FALSE	192	492	57	212	0	FALSE	ACH-000278
COV362_OVARY	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0198	0.0594	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COV362_OVARY	0.89	1	0.0792	FALSE	407	2205	196	549	0	FALSE	ACH-000278
COV362_OVARY	APP--MT-ND2	3	1	APP	11652	chr21:27394197:-	MT-ND2	33030	chrM:5324:+	INCL_NON_REF_SPLICE	YES	1756	3166	0	0	0.0297	0.0099	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	COV362_OVARY	0	0	0.0396	FALSE	0	1	0	51	0	FALSE	ACH-000278
COV362_OVARY	APP--MT-ND2	3	1	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	1595	3262	0	0	0.0297	0.0099	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	COV362_OVARY	0	0	0.0396	FALSE	0	1	0	51	0	FALSE	ACH-000278
COV362_OVARY	APP--MT-ND2	3	1	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	1467	4472	0	0	0.0297	0.0099	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	COV362_OVARY	0	0	0.0396	FALSE	0	1	0	51	0	FALSE	ACH-000278
COV362_OVARY	CHSY3--HSPA8P4	3	1	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	7	0	0.36	1	0.0297	0.0099	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	COV362_OVARY	0.36	1	0.0396	FALSE	89	26	1	44	0	FALSE	ACH-000278
COV362_OVARY	MT-ND6--MT-TE	3	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0.0099	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COV362_OVARY	1	1	0.0396	FALSE	499	1288	110	792	0	FALSE	ACH-000278
COV362_OVARY	CFL1--RPL3	3	0	CFL1	6221	chr11:65623436:-	RPL3	18713	chr22:39713627:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	GTEx&tcga_normals:2/3694=0.05%,CFL1->chr11:65590493-65629497:-,cofilin_1,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3	COV362_OVARY	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	FTH1--CRIP1	3	0	FTH1	1229	chr11:61734904:-	CRIP1	9092	chr14:105953570:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,CRIP1->chr14:105952654-105955284:+,chr14:105953536-105958604:+,cysteine_rich_protein_1	COV362_OVARY	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	QSOX1--MT-ND1	3	0	QSOX1	4118	chr1:180145133:+	MT-ND1	24175	chrM:3848:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	QSOX1->chr1:180123969-180173165:+,quiescin_sulfhydryl_oxidase_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	COV362_OVARY	1	1	0.0297	FALSE	0	0	0	1	0	FALSE	ACH-000278
COV362_OVARY	RORA--ANXA2	1	8	RORA	1267	chr15:61521252:-	ANXA2	59082	chr15:60656722:-	ONLY_REF_SPLICE	YES	3	3160	0.75	0	0.0099	0.0792	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	COV362_OVARY	0	0.75	0.0891	FALSE	0	1	0	4	0	FALSE	ACH-000278
COV362_OVARY	SLC1A5--MT-ND4L	3	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COV362_OVARY	1	1	0.0297	FALSE	0	0	0	189	0	FALSE	ACH-000278
COV362_OVARY	ZNF736--ENO1	3	0	ZNF736	8361	chr7:63797360:+	ENO1	28032	chr1:8925541:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	COV362_OVARY	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	RP11-353N4.6--SEC22B	2	3	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	139	595	0.03	0.01	0.0198	0.0297	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	COV362_OVARY	0.01	0.03	0.0495	FALSE	33	36	9	21	0	FALSE	ACH-000278
COV362_OVARY	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0099	0.0594	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COV362_OVARY	0.88	1	0.0693	FALSE	467	2173	244	435	0	FALSE	ACH-000278
COV362_OVARY	KANSL1--LRRC37A2	2	1	KANSL1	8599	chr17:44230270:-	LRRC37A2	36623	chr17:44594728:+	ONLY_REF_SPLICE	YES	33	12	0.08	0.2	0.0198	0.0099	GTEx_FI:{Brain=[count:2=pct:0.3]},KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	COV362_OVARY	0.08	0.2	0.0297	TRUE	0	1	0	3	1	TRUE	ACH-000278
COV362_OVARY	PTGES3--NACA	2	1	PTGES3	1378	chr12:57081782:-	NACA	24002	chr12:57108471:-	ONLY_REF_SPLICE	YES	1372	2439	0	0	0.0198	0.0099	LOCAL_REARRANGEMENT:-:[24053],PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,NACA->Oncogene{Bushman},chr12:57106212-57125412:-,nascent_polypeptide-associated_complex_alpha_subunit	COV362_OVARY	0	0	0.0297	FALSE	0	4	0	1	3	FALSE	ACH-000278
COV362_OVARY	RP11-120D5.1--MID1	2	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	32	0.75	0.09	0.0198	0.0099	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	COV362_OVARY	0.09	0.75	0.0297	FALSE	0	48	1	163	0	FALSE	ACH-000278
COV362_OVARY	CAPZA1--SRP9	2	0	CAPZA1	1711	chr1:113162505:+	SRP9	16068	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CAPZA1->capping_actin_protein_of_muscle_Z-line_alpha_subunit_1,chr1:113161795-113214241:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	COV362_OVARY	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	EPG5--ATP5A1	2	0	EPG5	48223	chr18:43435538:-	ATP5A1	61216	chr18:43675097:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	EPG5->Oncogene{Bushman},chr18:43427574-43547240:-,ectopic_P-granules_autophagy_protein_5_homolog_(C._elegans),ATP5A1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_alpha_subunit_1,_cardiac_muscle,chr18:43664110-43684300:-	COV362_OVARY	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	FAM32A--MAT2B	2	0	FAM32A	4448	chr19:16301384:+	MAT2B	11435	chr5:162939008:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	FAM32A->chr19:16296191-16302857:+,family_with_sequence_similarity_32_member_A,MAT2B->chr5:162930120-162946342:+,methionine_adenosyltransferase_2B	COV362_OVARY	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000278
COV362_OVARY	FGFR2--COL14A1	2	0	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	COV362_OVARY	1	1	0.0198	TRUE	0	0	0	32	0	FALSE	ACH-000278
COV362_OVARY	GPR141--NME8	2	0	GPR141	1108	chr7:37723506:+	NME8	28465	chr7:37936472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	COV362_OVARY	1	1	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000278
COV362_OVARY	NCOR2--UBC	2	0	NCOR2	11484	chr12:124934361:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	COV362_OVARY	1	1	0.0198	TRUE	12	15	2	11	0	FALSE	ACH-000278
COV362_OVARY	RPS3--CSDE1	2	0	RPS3	2292	chr11:75111821:+	CSDE1	20997	chr1:115282346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	COV362_OVARY	1	1	0.0198	TRUE	0	0	0	2	0	TRUE	ACH-000278
COV362_OVARY	SHISA9--U91319.1	1	4	SHISA9	9974	chr16:13297406:+	U91319.1	21484	chr16:13352190:+	ONLY_REF_SPLICE	NO	16	0	0.24	1	0.0099	0.0396	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	COV362_OVARY	0.24	1	0.0495	FALSE	0	14	0	12	0	FALSE	ACH-000278
COV362_OVARY	RP11-120D5.1--MID1	1	2	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	32	0.6	0.09	0.0099	0.0198	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	COV362_OVARY	0.09	0.6	0.0297	FALSE	2	31	0	60	0	FALSE	ACH-000278
COV362_OVARY	CCDC122--ENOX1	1	1	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	13	2	0.13	0.5	0.0099	0.0099	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	COV362_OVARY	0.13	0.5	0.0198	FALSE	39	52	2	34	0	FALSE	ACH-000278
COV362_OVARY	DDX50--ENO1	1	1	DDX50	1194	chr10:70661227:+	ENO1	27115	chr1:8925541:-	ONLY_REF_SPLICE	YES	142	3887	0.01	0	0.0099	0.0099	DDX50->DEAD-box_helicase_50,chr10:70661034-70706603:+,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	COV362_OVARY	0	0.01	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000278
COV362_OVARY	GPR141--NME8	1	1	GPR141	2513	chr7:37725186:+	NME8	21792	chr7:37907304:+	ONLY_REF_SPLICE	YES	46	2	0.04	0.5	0.0099	0.0099	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	COV362_OVARY	0.04	0.5	0.0198	FALSE	1	0	0	2	0	FALSE	ACH-000278
COV362_OVARY	GPR141--NME8	1	1	GPR141	2513	chr7:37725186:+	NME8	24165	chr7:37923905:+	ONLY_REF_SPLICE	YES	46	3	0.04	0.4	0.0099	0.0099	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	COV362_OVARY	0.04	0.4	0.0198	FALSE	3	3	0	3	0	FALSE	ACH-000278
COV362_OVARY	GPR141--NME8	1	1	GPR141	2513	chr7:37725186:+	NME8	22989	chr7:37916434:+	ONLY_REF_SPLICE	YES	46	2	0.04	0.5	0.0099	0.0099	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	COV362_OVARY	0.04	0.5	0.0198	FALSE	1	0	0	2	0	FALSE	ACH-000278
COV362_OVARY	KLHL7--FAM126A	1	1	KLHL7	1413	chr7:23145765:+	FAM126A	23978	chr7:23030758:-	ONLY_REF_SPLICE	YES	44	47	0.04	0.04	0.0099	0.0099	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[91604],KLHL7->chr7:23145353-23217533:+,kelch_like_family_member_7,FAM126A->chr7:22980878-23053749:-,family_with_sequence_similarity_126_member_A	COV362_OVARY	0.04	0.04	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000278
COV362_OVARY	PTGES3--NACA	1	1	PTGES3	1378	chr12:57081782:-	NACA	16271	chr12:57118307:-	ONLY_REF_SPLICE	YES	1372	311	0	0.01	0.0099	0.0099	LOCAL_REARRANGEMENT:-:[24053],PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,NACA->Oncogene{Bushman},chr12:57106212-57125412:-,nascent_polypeptide-associated_complex_alpha_subunit	COV362_OVARY	0	0.01	0.0198	FALSE	0	1	0	1	0	FALSE	ACH-000278
COV362_OVARY	PTGES3--NACA	1	1	PTGES3	4443	chr12:57065533:-	NACA	25006	chr12:57107467:-	ONLY_REF_SPLICE	YES	905	3380	0	0	0.0099	0.0099	LOCAL_REARRANGEMENT:-:[24053],PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,NACA->Oncogene{Bushman},chr12:57106212-57125412:-,nascent_polypeptide-associated_complex_alpha_subunit	COV362_OVARY	0	0	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000278
COV362_OVARY	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	29	0.67	0.06	0.0099	0.0099	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	COV362_OVARY	0.06	0.67	0.0198	FALSE	141	264	50	91	0	FALSE	ACH-000278
COV362_OVARY	TAF1D--RNPC3	1	1	TAF1D	6933	chr11:93470230:-	RNPC3	33735	chr1:104097656:+	ONLY_REF_SPLICE	YES	217	8	0.01	0.2	0.0099	0.0099	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=11;pct=0.13%;dist=Cells_-_EBV-transformed_lymphocytes=2,Stomach=1,Breast_-_Mammary_Tissue=1,Ovary=1,Pancreas=1,Uterus=1,Adipose_-_Subcutaneous=1,Muscle_-_Skeletal=1,Whole_Blood=1,Esophagus_-_Muscularis=1},TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-,RNPC3->RNA_binding_region_(RNP1,_RRM)_containing_3,chr1:104068313-104097861:+	COV362_OVARY	0.01	0.2	0.0198	FALSE	7	15	3	3	0	FALSE	ACH-000278
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	182	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.7109	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	1.7109	FALSE	369	2501	205	193	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	110	14	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0341	0.1316	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	1.1657	FALSE	462	80	0	856	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	92	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.8649	0.0658	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC15_UPPER_AERODIGESTIVE_TRACT	0.99	1	0.9307	FALSE	499	1288	110	792	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	72	29	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	15	15	0.87	0.87	0.6769	0.2726	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SCC15_UPPER_AERODIGESTIVE_TRACT	0.87	0.87	0.9495	TRUE	181	1564	124	196	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	77	3	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8834	12	0.01	0.87	0.7239	0.0282	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC15_UPPER_AERODIGESTIVE_TRACT	0.01	0.87	0.7521	FALSE	43	37	8	105	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	51	2	MT-ND5	2617	chrM:13953:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	NO	4915	629	0.01	0.08	0.4794	0.0188	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC15_UPPER_AERODIGESTIVE_TRACT	0.01	0.08	0.4982	FALSE	43	37	8	105	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	42	29	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	11	0	0.87	1	0.3948	0.2726	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC15_UPPER_AERODIGESTIVE_TRACT	0.87	1	0.6674	FALSE	499	1288	110	792	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	23	103	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2162	0.9683	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	1.1845	FALSE	369	2501	205	193	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	40	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.376	0.1504	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.5264	TRUE	508	994	45	981	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	34	10	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.3196	0.094	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC15_UPPER_AERODIGESTIVE_TRACT	0.98	1	0.4136	FALSE	499	1288	110	792	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	16	77	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1504	0.7239	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.8743	FALSE	369	2501	205	193	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	4	125	MT-TA	1059	chrM:5597:-	MT-TN	4015	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	1.1751	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	1.2127	FALSE	369	2501	205	193	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	ANP32B--WNK2	31	16	ANP32B	1249	chr9:100745891:+	WNK2	46746	chr9:96079802:+	ONLY_REF_SPLICE	YES	413	3	0.1	0.94	0.2914	0.1504	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.1	0.94	0.4418	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	13	60	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1222	0.564	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.6862	FALSE	369	2501	205	193	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	21	27	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1974	0.2538	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.4512	FALSE	369	2501	205	193	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	27	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	163	2	0.15	0.94	0.2538	0.0188	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SCC15_UPPER_AERODIGESTIVE_TRACT	0.15	0.94	0.2726	TRUE	519	3926	326	965	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	24	13	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2256	0.1222	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.3478	FALSE	462	80	0	856	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	22	3	MT-ND5	2514	chrM:13850:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7002	82	0	0.23	0.2068	0.0282	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0.23	0.235	FALSE	43	37	8	105	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	TMEM242--KDM1B	21	7	TMEM242	3035	chr6:157739814:-	KDM1B	25655	chr6:18205768:+	ONLY_REF_SPLICE	YES	96	12	0.23	0.7	0.1974	0.0658	{Klijn_CCL:Head-Neck=1},TMEM242->chr6:157710418-157744633:-,transmembrane_protein_242,KDM1B->chr6:18155560-18224084:+,lysine_demethylase_1B	SCC15_UPPER_AERODIGESTIVE_TRACT	0.23	0.7	0.2632	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	22	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2068	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.2162	FALSE	462	80	0	856	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	6	61	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0564	0.5734	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.6298	FALSE	369	2501	205	193	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	12	35	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.1128	0.329	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC15_UPPER_AERODIGESTIVE_TRACT	0.98	1	0.4418	FALSE	499	1288	110	792	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	8	51	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0752	0.4794	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.5546	FALSE	369	2501	205	193	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	18	9	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2	1	0.93	0.96	0.1692	0.0846	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC15_UPPER_AERODIGESTIVE_TRACT	0.93	0.96	0.2538	FALSE	43	37	8	105	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	20	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.188	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.188	FALSE	369	2501	205	193	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	DRAP1--MT-ND5	19	1	DRAP1	2687	chr11:65688414:+	MT-ND5	7033	chrM:13064:+	INCL_NON_REF_SPLICE	YES	981	8533	0.02	0	0.1786	0.0094	DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0.02	0.188	FALSE	0	0	0	1	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	14	21	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1316	0.1974	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.329	FALSE	462	80	0	856	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	18	1	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1692	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.1786	FALSE	369	2501	205	193	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	17	2	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10319	82	0	0.19	0.1598	0.0188	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0.19	0.1786	FALSE	43	37	8	105	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	7	42	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	11	0	0.82	1	0.0658	0.3948	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC15_UPPER_AERODIGESTIVE_TRACT	0.82	1	0.4606	FALSE	499	1288	110	792	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	10	30	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.094	0.282	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.376	FALSE	369	2501	205	193	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	15	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.141	0.0282	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.1692	FALSE	416	2512	207	587	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	15	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	17466	30587	0	0	0.141	0.0188	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0	0.1598	FALSE	183	104	9	328	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	12	10	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4762	32193	0	0	0.1128	0.094	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0	0.2068	FALSE	183	104	9	328	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	14	1	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1316	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.141	FALSE	13	214	14	42	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	12	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.95	0.91	0.1128	0.0846	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.91	0.95	0.1974	FALSE	515	4851	409	746	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	43	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	11	0	0.81	1	0.0282	0.4042	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC15_UPPER_AERODIGESTIVE_TRACT	0.81	1	0.4324	FALSE	499	1288	110	792	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	13	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	14207	29638	0	0	0.1222	0.0094	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0	0.1316	FALSE	183	104	9	328	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	12	4	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	2	629	0.89	0.02	0.1128	0.0376	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC15_UPPER_AERODIGESTIVE_TRACT	0.02	0.89	0.1504	FALSE	43	37	8	105	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	32	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	10	0	0.79	1	0.047	0.3008	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC15_UPPER_AERODIGESTIVE_TRACT	0.79	1	0.3478	FALSE	499	1288	110	792	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	11	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.78	0.1034	0.0658	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.78	1	0.1692	TRUE	458	1351	185	561	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	10	9	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.95	0.094	0.0846	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC15_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.1786	FALSE	43	37	8	105	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	35	MT-ND6	1159	chrM:14515:-	MT-TE	4559	chrM:14709:-	INCL_NON_REF_SPLICE	YES	9	0	0.81	1	0.0282	0.329	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC15_UPPER_AERODIGESTIVE_TRACT	0.81	1	0.3572	FALSE	499	1288	110	792	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	TMEM242--KDM1B	10	5	TMEM242	3035	chr6:157739814:-	KDM1B	26783	chr6:18207629:+	ONLY_REF_SPLICE	YES	96	8	0.14	0.65	0.094	0.047	{Klijn_CCL:Head-Neck=1},TMEM242->chr6:157710418-157744633:-,transmembrane_protein_242,KDM1B->chr6:18155560-18224084:+,lysine_demethylase_1B	SCC15_UPPER_AERODIGESTIVE_TRACT	0.14	0.65	0.141	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	RP11-662B19.2--WDR37	11	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1034	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.1034	TRUE	31	42	1	25	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	30	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	5	0	0.87	1	0.0282	0.282	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC15_UPPER_AERODIGESTIVE_TRACT	0.87	1	0.3102	FALSE	499	1288	110	792	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	10	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.094	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.094	FALSE	499	1288	110	792	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	10	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.094	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.094	FALSE	499	1288	110	792	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	9	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	18	1	0.42	0.0846	0.0376	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.42	1	0.1222	TRUE	465	1949	224	605	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	7	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.0658	0.1128	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.1786	FALSE	407	2205	196	549	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	PPAP2A--ST18	9	1	PPAP2A	1479	chr5:54830400:-	ST18	14113	chr8:53322012:-	ONLY_REF_SPLICE	YES	172	0	0.05	1	0.0846	0.0094	PPAP2A->chr5:54720682-54830878:-,ST18->chr8:53023399-53373519:-,suppression_of_tumorigenicity_18,_zinc_finger	SCC15_UPPER_AERODIGESTIVE_TRACT	0.05	1	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	TPCN2--NADSYN1	8	5	TPCN2	14908	chr11:68848967:+	NADSYN1	51653	chr11:71208529:+	ONLY_REF_SPLICE	YES	139	399	0.09	0.03	0.0752	0.047	TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.03	0.09	0.1222	TRUE	0	0	0	1	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	8	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.31	1	0.0752	0.0188	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCC15_UPPER_AERODIGESTIVE_TRACT	0.31	1	0.094	FALSE	125	705	46	456	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	8	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	14593	31452	0	0	0.0752	0.0094	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0	0.0846	FALSE	183	104	9	328	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	8	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0752	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0752	FALSE	499	1288	110	792	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	19	MT-ND6	1198	chrM:14476:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	11	0	0.67	1	0.0282	0.1786	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC15_UPPER_AERODIGESTIVE_TRACT	0.67	1	0.2068	FALSE	499	1288	110	792	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	19	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0.1786	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.2068	FALSE	462	80	0	856	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	7	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	13353	11197	0	0	0.0658	0.0094	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0	0.0752	FALSE	183	104	9	328	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	7	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13799	30587	0	0	0.0658	0.0094	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0	0.0752	FALSE	183	104	9	328	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	7	1	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0658	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0752	FALSE	13	214	14	42	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	7	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.47	1	0.0658	0.0094	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCC15_UPPER_AERODIGESTIVE_TRACT	0.47	1	0.0752	FALSE	292	1546	117	613	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	6	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	17466	0	0	1	0.0564	0.0376	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC15_UPPER_AERODIGESTIVE_TRACT	0	1	0.094	FALSE	182	97	9	327	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	7	0	MT-ND5	1701	chrM:13037:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0658	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0658	FALSE	42	36	7	104	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MTND4P12--MT-CO1	6	4	MTND4P12	1773	chr5:134262954:-	MT-CO1	5915	chrM:6441:+	INCL_NON_REF_SPLICE	YES	12	14950	0.45	0	0.0564	0.0376	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0.45	0.094	FALSE	10	0	0	6	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	SFN--MT-ND5	7	0	SFN	2028	chr1:27190660:+	MT-ND5	6032	chrM:13053:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0658	0	SFN->chr1:27189633-27190947:+,stratifin,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0658	FALSE	0	0	0	1	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	JUP--MT-CO3	6	2	JUP	8242	chr17:39923795:-	MT-CO3	24128	chrM:9574:+	INCL_NON_REF_SPLICE	YES	661	20591	0.01	0	0.0564	0.0188	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0752	FALSE	0	0	0	33	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	JUP--MT-CO3	6	2	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	694	20845	0.01	0	0.0564	0.0188	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0752	FALSE	0	0	0	33	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	14	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0.1316	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.1598	FALSE	462	80	0	856	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	6	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	14465	30587	0	0	0.0564	0.0094	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0	0.0658	FALSE	183	104	9	328	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	4	9	MT-ND5	2712	chrM:14048:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	19	1	0.41	0.93	0.0376	0.0846	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC15_UPPER_AERODIGESTIVE_TRACT	0.41	0.93	0.1222	FALSE	43	37	8	105	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	9	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0.0846	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.1222	FALSE	462	80	0	856	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	6	1	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0564	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0658	FALSE	369	2501	205	193	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	CDH13--RP11-22H5.2	6	0	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0564	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0564	FALSE	14	31	0	36	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0564	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0564	FALSE	499	1288	110	792	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	5	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	29	0	0.19	1	0.047	0.0188	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCC15_UPPER_AERODIGESTIVE_TRACT	0.19	1	0.0658	FALSE	164	806	69	479	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	DRAP1--MT-ND5	5	1	DRAP1	2698	chr11:65688425:+	MT-ND5	7045	chrM:13076:+	INCL_NON_REF_SPLICE	YES	888	8700	0.01	0	0.047	0.0094	DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0564	FALSE	0	0	0	1	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	5	1	MT-ATP6	1121	chrM:8647:+	MT-CO1	4698	chrM:5920:+	INCL_NON_REF_SPLICE	YES	14460	0	0	1	0.047	0.0094	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC15_UPPER_AERODIGESTIVE_TRACT	0	1	0.0564	FALSE	182	97	9	327	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	5	1	MT-TA	1067	chrM:5589:-	MT-TN	4133	chrM:5666:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.047	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0564	FALSE	369	2501	205	193	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	5	1	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.047	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0564	FALSE	369	2501	205	193	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	5	1	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.047	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0564	FALSE	13	214	14	42	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	5	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.047	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.047	FALSE	369	2501	205	193	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	IPPK--C9orf3	4	3	IPPK	6781	chr9:95410341:-	C9orf3	25257	chr9:97535284:+	ONLY_REF_SPLICE	YES	41	6	0.15	0.54	0.0376	0.0282	IPPK->chr9:95375466-95432547:-,inositol-pentakisphosphate_2-kinase,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SCC15_UPPER_AERODIGESTIVE_TRACT	0.15	0.54	0.0658	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	4	3	MT-ND5	2303	chrM:13639:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7390	82	0	0.08	0.0376	0.0282	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0.08	0.0658	FALSE	43	37	8	105	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	4	2	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	17335	16431	0	0	0.0376	0.0188	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0	0.0564	FALSE	183	104	9	328	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	4	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	16531	15522	0	0	0.0376	0.0188	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0	0.0564	FALSE	183	104	9	328	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	4	2	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	7181	1319	0	0	0.0376	0.0188	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0	0.0564	FALSE	43	37	8	105	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	4	2	MT-ND5	2514	chrM:13850:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	7002	629	0	0.01	0.0376	0.0188	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0564	FALSE	43	37	8	105	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	4	1	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	YES	13965	11425	0	0	0.0376	0.0094	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0	0.047	FALSE	183	104	9	328	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	4	1	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.047	FALSE	13	214	14	42	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	4	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0376	0.0094	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.047	FALSE	93	270	15	244	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	2	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.85	0.0188	0.0846	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.85	1	0.1034	FALSE	467	2173	244	435	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	SLC1A5--MT-ND4L	4	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	382	0	0.01	1	0.0376	0.0094	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC15_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.047	FALSE	0	0	0	189	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-ND2	4	0	MT-ATP6	1107	chrM:8633:+	MT-ND2	5117	chrM:4905:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0376	FALSE	177	96	13	17	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-ND2	4	0	MT-ATP6	1130	chrM:8656:+	MT-ND2	5517	chrM:5305:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0376	FALSE	177	96	13	17	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4584	chrM:14684:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0376	FALSE	499	1288	110	792	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	4	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0376	FALSE	369	2501	205	193	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	NDUFS4--EYS	3	4	NDUFS4	6788	chr5:52954454:+	EYS	51520	chr6:65149245:-	ONLY_REF_SPLICE	YES	290	0	0.02	1	0.0282	0.0376	NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+,EYS->chr6:64429876-66417118:-,eyes_shut_homolog_(Drosophila)	SCC15_UPPER_AERODIGESTIVE_TRACT	0.02	1	0.0658	TRUE	0	0	0	1	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0094	0.1128	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.1222	FALSE	192	492	57	212	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	TPCN2--NADSYN1	3	4	TPCN2	12945	chr11:68846488:+	NADSYN1	51653	chr11:71208529:+	ONLY_REF_SPLICE	YES	157	399	0.04	0.02	0.0282	0.0376	TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.02	0.04	0.0658	TRUE	0	0	0	1	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	IPPK--C9orf3	3	3	IPPK	6781	chr9:95410341:-	C9orf3	23903	chr9:97525340:+	INCL_NON_REF_SPLICE	YES	41	7	0.13	0.46	0.0282	0.0282	IPPK->chr9:95375466-95432547:-,inositol-pentakisphosphate_2-kinase,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SCC15_UPPER_AERODIGESTIVE_TRACT	0.13	0.46	0.0564	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	SLC1A5--MT-ND4L	3	3	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	367	0	0.02	1	0.0282	0.0282	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SCC15_UPPER_AERODIGESTIVE_TRACT	0.02	1	0.0564	FALSE	0	0	0	189	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	2	MT-ATP6	1139	chrM:8665:+	MT-CO1	5217	chrM:6439:+	INCL_NON_REF_SPLICE	YES	15700	15208	0	0	0.0282	0.0188	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0	0.047	FALSE	183	104	9	328	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	2	MT-ATP6	1132	chrM:8658:+	MT-CO1	5255	chrM:6477:+	INCL_NON_REF_SPLICE	YES	14805	18852	0	0	0.0282	0.0188	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0	0.047	FALSE	183	104	9	328	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	TPCN2--NADSYN1	3	2	TPCN2	5754	chr11:68830458:+	NADSYN1	51653	chr11:71208529:+	ONLY_REF_SPLICE	YES	222	399	0.02	0.01	0.0282	0.0188	TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.047	FALSE	0	0	0	1	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MB21D2--FGF12	3	1	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	17	1	0.19	0.8	0.0282	0.0094	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	SCC15_UPPER_AERODIGESTIVE_TRACT	0.19	0.8	0.0376	FALSE	0	17	0	46	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	1	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	13952	11271	0	0	0.0282	0.0094	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0	0.0376	FALSE	183	104	9	328	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-ND2	3	1	MT-ATP6	1158	chrM:8684:+	MT-ND2	5581	chrM:5369:+	INCL_NON_REF_SPLICE	YES	17444	135	0	0.03	0.0282	0.0094	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0.03	0.0376	FALSE	177	96	13	17	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	1	MT-ND5	1383	chrM:12719:+	MT-ATP8	5887	chrM:8440:+	INCL_NON_REF_SPLICE	YES	11147	1	0	0.8	0.0282	0.0094	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0.8	0.0376	FALSE	42	36	7	104	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ATP8	3	1	MT-ND5	1773	chrM:13109:+	MT-ATP8	5864	chrM:8417:+	INCL_NON_REF_SPLICE	YES	8183	0	0	1	0.0282	0.0094	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SCC15_UPPER_AERODIGESTIVE_TRACT	0	1	0.0376	FALSE	43	37	8	105	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	3	1	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0376	FALSE	13	214	14	42	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	NCOR2--UBC	3	1	NCOR2	25102	chr12:124862783:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	44	126	0.08	0.03	0.0282	0.0094	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SCC15_UPPER_AERODIGESTIVE_TRACT	0.03	0.08	0.0376	TRUE	1	3	0	3	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	9	4	0.31	0.5	0.0282	0.0094	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SCC15_UPPER_AERODIGESTIVE_TRACT	0.31	0.5	0.0376	FALSE	25	145	6	90	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	RP11-1L12.3--SLC5A12	3	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	11	0	0.27	1	0.0282	0.0094	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	SCC15_UPPER_AERODIGESTIVE_TRACT	0.27	1	0.0376	TRUE	3	101	0	60	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MIR205HG--C9orf3	3	0	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0282	TRUE	86	303	14	25	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0282	FALSE	499	1288	110	792	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	SCARB1--UBC	3	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0282	TRUE	55	66	6	101	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	LAMB3--RP1-28O10.1	2	2	LAMB3	15548	chr1:209796327:-	RP1-28O10.1	25983	chr1:209836406:-	ONLY_REF_SPLICE	YES	938	0	0	1	0.0188	0.0188	LOCAL_REARRANGEMENT:-:[8898],LAMB3->chr1:209788215-209825811:-,laminin_subunit_beta_3,RP1-28O10.1->chr1:209834709-209897470:-	SCC15_UPPER_AERODIGESTIVE_TRACT	0	1	0.0376	FALSE	0	0	0	1	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	LAMB3--RP1-28O10.1	2	2	LAMB3	13529	chr1:209798993:-	RP1-28O10.1	25983	chr1:209836406:-	ONLY_REF_SPLICE	YES	819	0	0	1	0.0188	0.0188	LOCAL_REARRANGEMENT:-:[8898],LAMB3->chr1:209788215-209825811:-,laminin_subunit_beta_3,RP1-28O10.1->chr1:209834709-209897470:-	SCC15_UPPER_AERODIGESTIVE_TRACT	0	1	0.0376	FALSE	0	1	0	1	1	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	20	0.8	0.17	0.0188	0.0188	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SCC15_UPPER_AERODIGESTIVE_TRACT	0.17	0.8	0.0376	FALSE	16	356	14	466	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	TPCN2--NADSYN1	2	2	TPCN2	6731	chr11:68831435:+	NADSYN1	51653	chr11:71208529:+	ONLY_REF_SPLICE	YES	235	399	0.02	0.01	0.0188	0.0188	TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.0376	FALSE	0	0	0	1	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	TPCN2--NADSYN1	1	6	TPCN2	15980	chr11:68851484:+	NADSYN1	51653	chr11:71208529:+	ONLY_REF_SPLICE	NO	135	399	0.05	0.02	0.0094	0.0564	TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.02	0.05	0.0658	TRUE	0	0	0	1	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	TPCN2--NADSYN1	2	2	TPCN2	12718	chr11:68846261:+	NADSYN1	51653	chr11:71208529:+	ONLY_REF_SPLICE	YES	197	399	0.02	0.01	0.0188	0.0188	TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.0376	FALSE	0	0	0	1	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	NCOR2--UBC	2	1	NCOR2	23954	chr12:124870291:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	53	126	0.05	0.02	0.0188	0.0094	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SCC15_UPPER_AERODIGESTIVE_TRACT	0.02	0.05	0.0282	TRUE	0	1	1	1	1	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	ACTA2--LIPA	2	0	ACTA2	1369	chr10:90750779:-	LIPA	27757	chr10:91007406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ACTA2->actin,_alpha_2,_smooth_muscle,_aorta,chr10:90694831-90751147:-,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	CDH13--RP11-22H5.2	2	0	CDH13	3588	chr16:82673070:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0188	FALSE	0	2	0	10	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	KDELC2--MDM2	2	0	KDELC2	8966	chr11:108348751:-	MDM2	22729	chr12:69214105:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	KDELC2->KDEL_motif_containing_2,chr11:108342832-108369159:-,MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0188	TRUE	0	0	0	2	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	POLE2--PSMA3	2	0	POLE2	3464	chr14:50146443:-	PSMA3	23714	chr14:58718837:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	POLE2->chr14:50110273-50155140:-,polymerase_(DNA)_epsilon_2,_accessory_subunit,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	ZBTB20--WDR52	2	0	ZBTB20	6598	chr3:114693213:-	WDR52	73217	chr3:113049515:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,WDR52->chr3:113005777-113160457:-	SCC15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	TFRC--MTO1	1	2	TFRC	19706	chr3:195780289:-	MTO1	33455	chr6:74189455:+	ONLY_REF_SPLICE	YES	500	35	0.01	0.08	0.0094	0.0188	TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor,MTO1->chr6:74171301-74218959:+,mitochondrial_tRNA_translation_optimization_1	SCC15_UPPER_AERODIGESTIVE_TRACT	0.01	0.08	0.0282	FALSE	0	0	0	1	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	29	246	0.06	0.01	0.0094	0.0094	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.01	0.06	0.0188	FALSE	16	22	0	27	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	BTBD1--NDUFAF7	1	1	BTBD1	5065	chr15:83710480:-	NDUFAF7	21729	chr2:37471054:+	ONLY_REF_SPLICE	YES	149	16	0.01	0.11	0.0094	0.0094	BTBD1->BTB_domain_containing_1,chr15:83685174-83736106:-,NDUFAF7->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_7,chr2:37458774-37480546:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.01	0.11	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	CDK7--CCNB1	1	1	CDK7	1613	chr5:68531280:+	CCNB1	20162	chr5:68470078:+	ONLY_REF_SPLICE	NO	143	522	0.01	0	0.0094	0.0094	LOCAL_REARRANGEMENT:+:[56596],CDK7->Oncogene{Bushman},chr5:68530668-68573250:+,cyclin-dependent_kinase_7,CCNB1->Oncogene{Bushman},chr5:68462837-68474072:+,cyclin_B1	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	LINC00662--ZNF407	1	1	LINC00662	1941	chr19:28283908:-	ZNF407	40553	chr18:72632470:+	ONLY_REF_SPLICE	NO	32	10	0.06	0.17	0.0094	0.0094	LINC00662->chr19:28175488-28284848:-,long_intergenic_non-protein_coding_RNA_662,ZNF407->chr18:72265106-72777627:+,zinc_finger_protein_407	SCC15_UPPER_AERODIGESTIVE_TRACT	0.06	0.17	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	NCOR2--UBC	1	1	NCOR2	10431	chr12:124941652:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	54	126	0.04	0.02	0.0094	0.0094	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SCC15_UPPER_AERODIGESTIVE_TRACT	0.02	0.04	0.0188	TRUE	4	3	0	2	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	NEK6--PSMB7	1	1	NEK6	10457	chr9:127076264:+	PSMB7	31340	chr9:127119194:-	ONLY_REF_SPLICE	YES	111	815	0.02	0	0.0094	0.0094	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=9;pct=0.10%;dist=Liver=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Brain_-_Hypothalamus=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1},LOCAL_INVERSION:+:-:[159],NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7	SCC15_UPPER_AERODIGESTIVE_TRACT	0	0.02	0.0188	FALSE	0	0	0	2	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	RP13-143G15.4--EYA4	1	1	RP13-143G15.4	3725	chr6:136483390:-	EYA4	26270	chr6:133777694:+	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.0094	0.0094	RP13-143G15.4->chr6:136415853-136546733:-,EYA4->EYA_transcriptional_coactivator_and_phosphatase_4,Oncogene{Bushman},chr6:133561736-133853258:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	RP13-143G15.4--EYA4	1	1	RP13-143G15.4	3725	chr6:136483390:-	EYA4	27363	chr6:133782252:+	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0094	0.0094	RP13-143G15.4->chr6:136415853-136546733:-,EYA4->EYA_transcriptional_coactivator_and_phosphatase_4,Oncogene{Bushman},chr6:133561736-133853258:+	SCC15_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	SUN1--ADAP1	1	1	SUN1	23266	chr7:905704:+	ADAP1	49955	chr7:944809:-	ONLY_REF_SPLICE	YES	281	36	0.01	0.05	0.0094	0.0094	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Aorta=1,Prostate=1,Uterus=1},LOCAL_INVERSION:+:-:[1468],SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+,ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-	SCC15_UPPER_AERODIGESTIVE_TRACT	0.01	0.05	0.0188	FALSE	3	2	0	4	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	TMEM91--TRMT112	1	1	TMEM91	3479	chr19:41870000:+	TRMT112	12807	chr11:64084837:-	ONLY_REF_SPLICE	YES	8	358	0.2	0.01	0.0094	0.0094	TMEM91->chr19:41856816-41889988:+,transmembrane_protein_91,TRMT112->chr11:64083932-64085556:-,tRNA_methyltransferase_11-2_homolog_(S._cerevisiae)	SCC15_UPPER_AERODIGESTIVE_TRACT	0.01	0.2	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000254
SCC15_UPPER_AERODIGESTIVE_TRACT	ZNF462--RP11-363D24.1	1	1	ZNF462	14221	chr9:109701388:+	RP11-363D24.1	32404	chr9:110182701:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0094	0.0094	ZNF462->chr9:109625378-109775915:+,zinc_finger_protein_462,RP11-363D24.1->chr9:110182565-110193083:-	SCC15_UPPER_AERODIGESTIVE_TRACT	0.2	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000254
HCC1954_BREAST	PHF20L1--SAMD12	144	100	PHF20L1	9359	chr8:133816985:+	SAMD12	48698	chr8:119209971:-	ONLY_REF_SPLICE	YES	52	64	0.82	0.79	1.8203	1.2641	{Klijn_CCL:Breast=1},PHF20L1->PHD_finger_protein_20-like_1,chr8:133787618-133861052:+,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	HCC1954_BREAST	0.79	0.82	3.0844	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	STRADB--NOP58	112	77	STRADB	8068	chr2:202337799:+	NOP58	29452	chr2:203162102:+	ONLY_REF_SPLICE	YES	18	174	0.91	0.52	1.4158	0.9734	Mitelman{CA_ad=1},{Klijn_CCL:Breast=1},STRADB->STE20-related_kinase_adaptor_beta,chr2:202252581-202345569:+,NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+	HCC1954_BREAST	0.52	0.91	2.3892	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	GALNT7--ORC4	103	92	GALNT7	10139	chr4:174225269:+	ORC4	27552	chr2:148716435:-	ONLY_REF_SPLICE	YES	137	160	0.59	0.55	1.302	1.163	{Klijn_CCL:Breast=1},GALNT7->chr4:174089904-174245118:+,polypeptide_N-acetylgalactosaminyltransferase_7,ORC4->chr2:148687968-148779147:-,origin_recognition_complex_subunit_4	HCC1954_BREAST	0.55	0.59	2.465	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	GSDMC--PVT1	50	22	GSDMC	6558	chr8:130774872:-	PVT1	40472	chr8:129113226:+	ONLY_REF_SPLICE	YES	89	29	0.45	0.71	0.6321	0.2781	GSDMC->chr8:130760442-130799134:-,gasdermin_C,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	HCC1954_BREAST	0.45	0.71	0.9102	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	TIMM23B--LINC00843	47	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5941	0.2023	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1954_BREAST	1	1	0.7964	TRUE	508	994	45	981	0	FALSE	ACH-000859
HCC1954_BREAST	OXR1--PCAT2	37	45	OXR1	9883	chr8:107670413:+	PCAT2	34555	chr8:128091378:-	ONLY_REF_SPLICE	YES	186	0	0.31	1	0.4677	0.5689	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,PCAT2->chr8:128084939-128094466:-,prostate_cancer_associated_transcript_2_(non-protein_coding)	HCC1954_BREAST	0.31	1	1.0366	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	KANSL1--ARL17B	29	27	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	32	37	0.64	0.6	0.3666	0.3413	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC1954_BREAST	0.6	0.64	0.7079	TRUE	181	1564	124	196	0	FALSE	ACH-000859
HCC1954_BREAST	INPP5A--PWWP2B	32	3	INPP5A	2394	chr10:134421460:+	PWWP2B	25739	chr10:134230565:+	ONLY_REF_SPLICE	YES	1	45	0.97	0.44	0.4045	0.0379	GTEx_FI:{Skin=[count:6=pct:1.9],Brain=[count:1=pct:0.2],Blood=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=6;pct=0.07%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Pancreas=1,Colon_-_Sigmoid=1},INPP5A->chr10:134351324-134596979:+,inositol_polyphosphate-5-phosphatase_A,PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+	HCC1954_BREAST	0.44	0.97	0.4424	TRUE	1	1	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	MT-ND6--MT-TE	32	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4045	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1954_BREAST	1	1	0.4045	FALSE	499	1288	110	792	0	FALSE	ACH-000859
HCC1954_BREAST	TIMM23--RP11-464F9.1	30	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	210	6	0.14	0.85	0.3792	0.0379	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC1954_BREAST	0.14	0.85	0.4171	TRUE	519	3926	326	965	0	FALSE	ACH-000859
HCC1954_BREAST	CCDC57--LINC00511	23	20	CCDC57	3818	chr17:80159548:-	LINC00511	53050	chr17:70427365:-	INCL_NON_REF_SPLICE	YES	7	65	0.86	0.4	0.2907	0.2528	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	HCC1954_BREAST	0.4	0.86	0.5435	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	URB1--BAGE2	23	6	URB1	8875	chr21:33744816:-	BAGE2	54922	chr21:11058323:-	ONLY_REF_SPLICE	YES	56	0	0.34	1	0.2907	0.0758	URB1->URB1_ribosome_biogenesis_1_homolog_(S._cerevisiae),chr21:33683329-33765335:-,BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-	HCC1954_BREAST	0.34	1	0.3665	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	PDCD6--RP11-138J23.1	16	12	PDCD6	2152	chr5:272887:+	RP11-138J23.1	23986	chr5:103439875:+	ONLY_REF_SPLICE	YES	512	4	0.05	0.88	0.2023	0.1517	PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,RP11-138J23.1->chr5:103415612-103441104:+	HCC1954_BREAST	0.05	0.88	0.354	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	RBM6--FAM212A	18	2	RBM6	1219	chr3:49977658:+	FAM212A	34768	chr3:49841614:+	ONLY_REF_SPLICE	YES	4	14	0.83	0.59	0.2275	0.0253	RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,FAM212A->chr3:49840687-49842463:+,family_with_sequence_similarity_212_member_A	HCC1954_BREAST	0.59	0.83	0.2528	TRUE	0	1	0	1	1	TRUE	ACH-000859
HCC1954_BREAST	C15orf57--CBX3	13	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	44	28	0.4	0.51	0.1643	0.2023	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1954_BREAST	0.4	0.51	0.3666	TRUE	267	562	48	632	0	FALSE	ACH-000859
HCC1954_BREAST	MT-ND6--MT-TE	17	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2149	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1954_BREAST	1	1	0.2149	FALSE	499	1288	110	792	0	FALSE	ACH-000859
HCC1954_BREAST	ITSN1--AF127577.8	13	12	ITSN1	8199	chr21:35107509:+	AF127577.8	68376	chr21:16318876:+	ONLY_REF_SPLICE	YES	69	0	0.27	1	0.1643	0.1517	ITSN1->chr21:35014706-35272165:+,intersectin_1,AF127577.8->chr21:16290855-16319417:+	HCC1954_BREAST	0.27	1	0.316	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	TRMT11--NCOA7	14	8	TRMT11	5532	chr6:126319830:+	NCOA7	27477	chr6:126199409:+	ONLY_REF_SPLICE	YES	54	45	0.29	0.33	0.177	0.1011	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[55310],TRMT11->chr6:126307576-126360422:+,tRNA_methyltransferase_11_homolog,NCOA7->chr6:126102307-126252266:+,nuclear_receptor_coactivator_7	HCC1954_BREAST	0.29	0.33	0.2781	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	INTS1--PRKAR1B	13	9	INTS1	11132	chr7:1534452:-	PRKAR1B	40707	chr7:751164:-	ONLY_REF_SPLICE	YES	131	1	0.14	0.96	0.1643	0.1138	INTS1->chr7:1509913-1545489:-,integrator_complex_subunit_1,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	HCC1954_BREAST	0.14	0.96	0.2781	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	ATRN--VPS16	11	11	ATRN	20474	chr20:3565527:+	VPS16	42101	chr20:2840365:+	ONLY_REF_SPLICE	YES	120	56	0.15	0.28	0.1391	0.1391	ATRN->attractin,chr20:3451687-3631769:+,VPS16->VPS16,_CORVET/HOPS_core_subunit,chr20:2821349-2847378:+	HCC1954_BREAST	0.15	0.28	0.2782	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	INTS1--PRKAR1B	9	11	INTS1	11132	chr7:1534452:-	PRKAR1B	37799	chr7:756483:-	ONLY_REF_SPLICE	YES	131	1	0.13	0.95	0.1138	0.1391	INTS1->chr7:1509913-1545489:-,integrator_complex_subunit_1,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	HCC1954_BREAST	0.13	0.95	0.2529	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	BRWD1--HLCS	8	14	BRWD1	35204	chr21:40582712:-	HLCS	68824	chr21:38269431:-	ONLY_REF_SPLICE	YES	59	38	0.27	0.37	0.1011	0.177	{Klijn_CCL:Breast=1},BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,HLCS->chr21:38123189-38362536:-,holocarboxylase_synthetase	HCC1954_BREAST	0.27	0.37	0.2781	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	GON4L--KIAA0907	9	5	GON4L	3780	chr1:155823067:-	KIAA0907	47622	chr1:155896947:-	ONLY_REF_SPLICE	YES	51	57	0.22	0.2	0.1138	0.0632	LOCAL_REARRANGEMENT:-:[53643],GON4L->chr1:155719508-155829191:-,gon-4_like,KIAA0907->KIAA0907,chr1:155882834-155904191:-	HCC1954_BREAST	0.2	0.22	0.177	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	NAA15--CTC-499J9.1	9	1	NAA15	1377	chr4:140222985:+	CTC-499J9.1	36846	chr5:110618734:-	ONLY_REF_SPLICE	YES	80	0	0.11	1	0.1138	0.0126	NAA15->N(alpha)-acetyltransferase_15,_NatA_auxiliary_subunit,chr4:140222609-140341187:+,CTC-499J9.1->chr5:110613215-110638265:-	HCC1954_BREAST	0.11	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	NDUFC1--ARL14EPL	9	1	NDUFC1	1136	chr4:140223570:-	ARL14EPL	16047	chr5:115389711:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.1138	0.0126	NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-,ARL14EPL->ADP_ribosylation_factor_like_GTPase_14_effector_protein_like,chr5:115387163-115395815:+	HCC1954_BREAST	0.91	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	UHRF1BP1L--ANKS1B	9	1	UHRF1BP1L	5697	chr12:100496544:-	ANKS1B	33688	chr12:100219167:-	ONLY_REF_SPLICE	YES	22	0	0.31	1	0.1138	0.0126	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[43801],UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	HCC1954_BREAST	0.31	1	0.1264	FALSE	0	0	0	1	0	FALSE	ACH-000859
HCC1954_BREAST	MT-ND6--MT-TE	9	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1138	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1954_BREAST	1	1	0.1138	FALSE	499	1288	110	792	0	FALSE	ACH-000859
HCC1954_BREAST	OR51S1--TP53I11	9	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1138	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HCC1954_BREAST	1	1	0.1138	TRUE	402	216	10	229	0	FALSE	ACH-000859
HCC1954_BREAST	BRWD1--HLCS	6	11	BRWD1	34060	chr21:40584592:-	HLCS	68824	chr21:38269431:-	ONLY_REF_SPLICE	YES	62	38	0.22	0.31	0.0758	0.1391	{Klijn_CCL:Breast=1},BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,HLCS->chr21:38123189-38362536:-,holocarboxylase_synthetase	HCC1954_BREAST	0.22	0.31	0.2149	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	OXR1--PCAT2	3	23	OXR1	9783	chr8:107670313:+	PCAT2	34555	chr8:128091378:-	ONLY_REF_SPLICE	YES	179	0	0.13	1	0.0379	0.2907	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,PCAT2->chr8:128084939-128094466:-,prostate_cancer_associated_transcript_2_(non-protein_coding)	HCC1954_BREAST	0.13	1	0.3286	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	PUS7--ATXN7L1	6	9	PUS7	1216	chr7:105162499:-	ATXN7L1	33249	chr7:105305735:-	ONLY_REF_SPLICE	YES	59	6	0.2	0.71	0.0758	0.1138	LOCAL_REARRANGEMENT:-:[82800],PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative),ATXN7L1->ataxin_7_like_1,chr7:105245514-105517050:-	HCC1954_BREAST	0.2	0.71	0.1896	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	PDCD1LG2--TPGS2	7	4	PDCD1LG2	3634	chr9:5535050:+	TPGS2	21681	chr18:34380274:-	ONLY_REF_SPLICE	YES	3	348	0.79	0.03	0.0885	0.0506	{Klijn_CCL:Breast=1},PDCD1LG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:5510545-5571282:+,programmed_cell_death_1_ligand_2,TPGS2->chr18:34359987-34409158:-,tubulin_polyglutamylase_complex_subunit_2	HCC1954_BREAST	0.03	0.79	0.1391	TRUE	0	0	0	1	0	FALSE	ACH-000859
HCC1954_BREAST	SIPA1L3--POU2F2	8	0	SIPA1L3	3094	chr19:38423332:+	POU2F2	41565	chr19:42664544:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1011	0	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,POU2F2->Oncogene{Bushman},POU_class_2_homeobox_2,chr19:42590263-42700737:-	HCC1954_BREAST	1	1	0.1011	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	VPS53--LSMD1	6	8	VPS53	3923	chr17:613773:-	LSMD1	59197	chr17:7760516:-	ONLY_REF_SPLICE	YES	65	189	0.18	0.07	0.0758	0.1011	VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,LSMD1->chr17:7760003-7788556:-	HCC1954_BREAST	0.07	0.18	0.1769	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	ZNRF3--GLDC	8	0	ZNRF3	1475	chr22:29280054:+	GLDC	33596	chr9:6565429:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1011	0	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,GLDC->chr9:6532464-6645650:-,glycine_decarboxylase	HCC1954_BREAST	1	1	0.1011	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	RP11-123O10.4--GRIP1	7	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0885	0.0253	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1954_BREAST	1	1	0.1138	FALSE	416	2512	207	587	0	FALSE	ACH-000859
HCC1954_BREAST	CTC-338M12.4--LINC00964	5	8	CTC-338M12.4	1864	chr5:180674386:+	LINC00964	8941	chr8:125861517:+	ONLY_REF_SPLICE	YES	27	0	0.33	1	0.0632	0.1011	CTC-338M12.4->chr5:180673523-180699168:+,LINC00964->chr8:125860979-125966570:+,long_intergenic_non-protein_coding_RNA_964	HCC1954_BREAST	0.33	1	0.1643	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	OXR1--ZNF346	1	23	OXR1	9883	chr8:107670413:+	ZNF346	38324	chr5:176477704:+	ONLY_REF_SPLICE	YES	186	149	0.11	0.14	0.0126	0.2907	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346	HCC1954_BREAST	0.11	0.14	0.3033	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	BRWD1--HLCS	3	13	BRWD1	35124	chr21:40582792:-	HLCS	68824	chr21:38269431:-	ONLY_REF_SPLICE	YES	58	38	0.22	0.3	0.0379	0.1643	{Klijn_CCL:Breast=1},BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,HLCS->chr21:38123189-38362536:-,holocarboxylase_synthetase	HCC1954_BREAST	0.22	0.3	0.2022	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	EXT1--CEP72	6	1	EXT1	2769	chr8:119122324:-	CEP72	32709	chr5:640523:+	ONLY_REF_SPLICE	YES	518	228	0.01	0.03	0.0758	0.0126	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,CEP72->centrosomal_protein_72,chr5:612387-667283:+	HCC1954_BREAST	0.01	0.03	0.0884	FALSE	0	0	0	1	0	FALSE	ACH-000859
HCC1954_BREAST	IL10RB--AP001596.6	5	5	IL10RB	2747	chr21:34640822:+	AP001596.6	16494	chr21:27760043:+	ONLY_REF_SPLICE	YES	80	0	0.11	1	0.0632	0.0632	IL10RB->chr21:34638663-34669539:+,interleukin_10_receptor_subunit_beta,AP001596.6->chr21:27750871-27844017:+	HCC1954_BREAST	0.11	1	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	C15orf57--CBX3	3	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	44	29	0.25	0.34	0.0379	0.1517	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1954_BREAST	0.25	0.34	0.1896	TRUE	267	562	48	632	0	FALSE	ACH-000859
HCC1954_BREAST	C15orf57--CBX3	3	12	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	44	29	0.25	0.34	0.0379	0.1517	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1954_BREAST	0.25	0.34	0.1896	TRUE	267	562	48	632	0	FALSE	ACH-000859
HCC1954_BREAST	NDUFC1--ARL14EPL	5	4	NDUFC1	2950	chr4:140221756:-	ARL14EPL	16047	chr5:115389711:+	ONLY_REF_SPLICE	YES	14	0	0.39	1	0.0632	0.0506	NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-,ARL14EPL->ADP_ribosylation_factor_like_GTPase_14_effector_protein_like,chr5:115387163-115395815:+	HCC1954_BREAST	0.39	1	0.1138	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	SUGP2--CARM1	6	0	SUGP2	5741	chr19:19135428:-	CARM1	24511	chr19:11015627:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0758	0	SUGP2->SURP_and_G-patch_domain_containing_2,chr19:19101697-19144832:-,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	HCC1954_BREAST	1	1	0.0758	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	RP11-96H19.1--RP11-446N19.1	4	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0506	0.0758	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1954_BREAST	0.91	1	0.1264	FALSE	515	4851	409	746	0	FALSE	ACH-000859
HCC1954_BREAST	MARK4--AC005779.2	5	0	MARK4	2472	chr19:45754897:+	AC005779.2	25784	chr19:45690589:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0632	0	NEIGHBORS_OVERLAP:+:+:[22622],MARK4->Oncogene{Bushman},chr19:45582546-45808541:+,microtubule_affinity_regulating_kinase_4,AC005779.2->chr19:45683080-45705702:+	HCC1954_BREAST	1	1	0.0632	FALSE	0	0	0	1	0	FALSE	ACH-000859
HCC1954_BREAST	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1954_BREAST	1	1	0.0632	FALSE	499	1288	110	792	0	FALSE	ACH-000859
HCC1954_BREAST	CTD-2337A12.1--CAST	4	3	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	134	1	0.05	0.0506	0.0379	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HCC1954_BREAST	0.05	1	0.0885	TRUE	347	1186	183	220	0	FALSE	ACH-000859
HCC1954_BREAST	SNRNP70--RUVBL2	4	3	SNRNP70	2143	chr19:49589818:+	RUVBL2	22245	chr19:49510355:+	INCL_NON_REF_SPLICE	YES	603	399	0.01	0.02	0.0506	0.0379	LOCAL_REARRANGEMENT:+:[69424],SNRNP70->chr19:49588676-49611862:+,small_nuclear_ribonucleoprotein_U1_subunit_70,RUVBL2->Oncogene{Bushman},RuvB_like_AAA_ATPase_2,chr19:49496705-49519252:+	HCC1954_BREAST	0.01	0.02	0.0885	FALSE	0	0	0	1	0	FALSE	ACH-000859
HCC1954_BREAST	OXR1--PCAT2	3	6	OXR1	5884	chr8:107593479:+	PCAT2	34555	chr8:128091378:-	ONLY_REF_SPLICE	YES	28	0	0.24	1	0.0379	0.0758	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,PCAT2->chr8:128084939-128094466:-,prostate_cancer_associated_transcript_2_(non-protein_coding)	HCC1954_BREAST	0.24	1	0.1137	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	IL10RB--AP001596.6	4	1	IL10RB	2747	chr21:34640822:+	AP001596.6	22662	chr21:27843070:+	ONLY_REF_SPLICE	YES	80	1	0.06	0.83	0.0506	0.0126	IL10RB->chr21:34638663-34669539:+,interleukin_10_receptor_subunit_beta,AP001596.6->chr21:27750871-27844017:+	HCC1954_BREAST	0.06	0.83	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	NDUFC1--ARL14EPL	4	1	NDUFC1	1136	chr4:140223570:-	ARL14EPL	14942	chr5:115387154:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0506	0.0126	NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-,ARL14EPL->ADP_ribosylation_factor_like_GTPase_14_effector_protein_like,chr5:115387163-115395815:+	HCC1954_BREAST	0.83	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	SLC19A1--POFUT2	4	1	SLC19A1	10793	chr21:46945731:-	POFUT2	27560	chr21:46705843:-	ONLY_REF_SPLICE	YES	45	47	0.1	0.1	0.0506	0.0126	SLC19A1->Oncogene{Bushman},chr21:46913486-46964325:-,solute_carrier_family_19_member_1,POFUT2->chr21:46683843-46707813:-,protein_O-fucosyltransferase_2	HCC1954_BREAST	0.1	0.1	0.0632	TRUE	0	0	0	1	0	FALSE	ACH-000859
HCC1954_BREAST	SNRNP70--RUVBL2	4	1	SNRNP70	2143	chr19:49589818:+	RUVBL2	23516	chr19:49513033:+	ONLY_REF_SPLICE	YES	603	306	0.01	0.02	0.0506	0.0126	LOCAL_REARRANGEMENT:+:[69424],SNRNP70->chr19:49588676-49611862:+,small_nuclear_ribonucleoprotein_U1_subunit_70,RUVBL2->Oncogene{Bushman},RuvB_like_AAA_ATPase_2,chr19:49496705-49519252:+	HCC1954_BREAST	0.01	0.02	0.0632	FALSE	0	0	0	1	0	FALSE	ACH-000859
HCC1954_BREAST	CTC-338M12.4--LINC00964	2	8	CTC-338M12.4	1864	chr5:180674386:+	LINC00964	9411	chr8:125861987:+	ONLY_REF_SPLICE	YES	27	1	0.27	0.91	0.0253	0.1011	CTC-338M12.4->chr5:180673523-180699168:+,LINC00964->chr8:125860979-125966570:+,long_intergenic_non-protein_coding_RNA_964	HCC1954_BREAST	0.27	0.91	0.1264	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	MCC--MAN2A1	4	0	MCC	12472	chr5:112478915:-	MAN2A1	57911	chr5:109049221:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0506	0	MCC->Oncogene{Bushman},chr5:112357796-112824527:-,mutated_in_colorectal_cancers,MAN2A1->chr5:109025067-109205326:+,mannosidase_alpha_class_2A_member_1	HCC1954_BREAST	1	1	0.0506	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	MCC--SNTB1	4	0	MCC	3996	chr5:112720665:-	SNTB1	62305	chr8:121587465:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0506	0	MCC->Oncogene{Bushman},chr5:112357796-112824527:-,mutated_in_colorectal_cancers,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	HCC1954_BREAST	1	1	0.0506	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	ZNF790--IGFL4	4	0	ZNF790	1088	chr19:37341602:-	IGFL4	15050	chr19:46563551:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0506	0	ZNF790->chr19:37308330-37341689:-,zinc_finger_protein_790,IGFL4->IGF_like_family_member_4,chr19:46543006-46580376:-	HCC1954_BREAST	1	1	0.0506	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0253	0.0758	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1954_BREAST	0.89	1	0.1011	FALSE	467	2173	244	435	0	FALSE	ACH-000859
HCC1954_BREAST	MT-ND6--MT-TE	3	1	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0379	0.0126	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1954_BREAST	0.8	1	0.0505	FALSE	499	1288	110	792	0	FALSE	ACH-000859
HCC1954_BREAST	MT-ND6--MT-TE	3	1	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0379	0.0126	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1954_BREAST	0.8	1	0.0505	FALSE	499	1288	110	792	0	FALSE	ACH-000859
HCC1954_BREAST	SLC19A1--POFUT2	3	1	SLC19A1	13038	chr21:46934810:-	POFUT2	27560	chr21:46705843:-	ONLY_REF_SPLICE	YES	27	47	0.13	0.08	0.0379	0.0126	SLC19A1->Oncogene{Bushman},chr21:46913486-46964325:-,solute_carrier_family_19_member_1,POFUT2->chr21:46683843-46707813:-,protein_O-fucosyltransferase_2	HCC1954_BREAST	0.08	0.13	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	AKAP8--KRI1	3	0	AKAP8	1086	chr19:15490524:-	KRI1	21037	chr19:10673513:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0379	0	AKAP8->A-kinase_anchoring_protein_8,chr19:15464196-15490609:-,KRI1->KRI1_homolog,chr19:10663761-10676713:-	HCC1954_BREAST	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0379	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1954_BREAST	1	1	0.0379	TRUE	465	1949	224	605	0	FALSE	ACH-000859
HCC1954_BREAST	CTSC--SHANK2	2	3	CTSC	2433	chr11:88068105:-	SHANK2	49541	chr11:70666787:-	ONLY_REF_SPLICE	YES	615	0	0.01	1	0.0253	0.0379	CTSC->cathepsin_C,chr11:88026760-88070955:-,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	HCC1954_BREAST	0.01	1	0.0632	FALSE	0	0	0	1	0	FALSE	ACH-000859
HCC1954_BREAST	KANSL1--ARL17B	1	7	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	34	37	0.19	0.18	0.0126	0.0885	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HCC1954_BREAST	0.18	0.19	0.1011	TRUE	105	90	7	93	0	FALSE	ACH-000859
HCC1954_BREAST	OXR1--ZNF346	1	7	OXR1	9883	chr8:107670413:+	ZNF346	39558	chr5:176489059:+	ONLY_REF_SPLICE	YES	186	172	0.04	0.04	0.0126	0.0885	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,ZNF346->chr5:176449697-176508190:+,zinc_finger_protein_346	HCC1954_BREAST	0.04	0.04	0.1011	TRUE	0	0	0	1	0	FALSE	ACH-000859
HCC1954_BREAST	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0126	0.0885	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1954_BREAST	1	1	0.1011	FALSE	407	2205	196	549	0	FALSE	ACH-000859
HCC1954_BREAST	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0126	0.0885	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1954_BREAST	1	1	0.1011	FALSE	192	492	57	212	0	FALSE	ACH-000859
HCC1954_BREAST	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0126	0.0885	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1954_BREAST	1	1	0.1011	FALSE	275	511	55	178	0	FALSE	ACH-000859
HCC1954_BREAST	NDUFC1--ARL14EPL	2	2	NDUFC1	2950	chr4:140221756:-	ARL14EPL	17187	chr5:115394422:+	ONLY_REF_SPLICE	YES	14	11	0.22	0.27	0.0253	0.0253	NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-,ARL14EPL->ADP_ribosylation_factor_like_GTPase_14_effector_protein_like,chr5:115387163-115395815:+	HCC1954_BREAST	0.22	0.27	0.0506	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	ATP10A--RP11-547C5.2	2	1	ATP10A	6585	chr15:26026166:-	RP11-547C5.2	33345	chr12:43383650:-	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0253	0.0126	ATP10A->ATPase_phospholipid_transporting_10A_(putative),chr15:25922420-26110317:-,RP11-547C5.2->chr12:43373057-43390289:-	HCC1954_BREAST	0.75	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	FAM53A--LETM1	2	1	FAM53A	2848	chr4:1670394:-	LETM1	19147	chr4:1843524:-	ONLY_REF_SPLICE	YES	1	8	0.75	0.27	0.0253	0.0126	FAM53A->chr4:1619642-1686029:-,family_with_sequence_similarity_53_member_A,LETM1->chr4:1813206-1857974:-,leucine_zipper_and_EF-hand_containing_transmembrane_protein_1	HCC1954_BREAST	0.27	0.75	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	IL10RB--AP001597.1	2	1	IL10RB	2747	chr21:34640822:+	AP001597.1	15795	chr21:27875901:+	ONLY_REF_SPLICE	YES	80	0	0.04	1	0.0253	0.0126	IL10RB->chr21:34638663-34669539:+,interleukin_10_receptor_subunit_beta,AP001597.1->chr21:27765954-27941571:+	HCC1954_BREAST	0.04	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	NDUFC1--ARL14EPL	2	1	NDUFC1	1136	chr4:140223570:-	ARL14EPL	17187	chr5:115394422:+	ONLY_REF_SPLICE	YES	1	11	0.75	0.21	0.0253	0.0126	NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-,ARL14EPL->ADP_ribosylation_factor_like_GTPase_14_effector_protein_like,chr5:115387163-115395815:+	HCC1954_BREAST	0.21	0.75	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	TYMS--SEPT9	2	1	TYMS	4286	chr18:662320:+	SEPT9	45878	chr17:75483506:+	ONLY_REF_SPLICE	YES	238	326	0.01	0.01	0.0253	0.0126	{Klijn_CCL:Lung=1,Urinary_Bladder=1},TYMS->chr18:657604-673578:+,thymidylate_synthetase,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	HCC1954_BREAST	0.01	0.01	0.0379	FALSE	0	9	0	5	1	FALSE	ACH-000859
HCC1954_BREAST	UBA2--GLYAT	2	1	UBA2	10047	chr19:34936026:+	GLYAT	25382	chr11:58491984:-	ONLY_REF_SPLICE	YES	471	0	0.01	1	0.0253	0.0126	UBA2->chr19:34919257-34960853:+,ubiquitin_like_modifier_activating_enzyme_2,GLYAT->chr11:58407899-58499447:-,glycine-N-acyltransferase	HCC1954_BREAST	0.01	1	0.0379	FALSE	0	0	0	1	0	FALSE	ACH-000859
HCC1954_BREAST	AGO2--CHRAC1	2	0	AGO2	20190	chr8:141549419:-	CHRAC1	28715	chr8:141524468:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	LOCAL_INVERSION:-:+:[14028],AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,CHRAC1->chr8:141521397-141527236:+,chromatin_accessibility_complex_1	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	AKAP8--KRI1	2	0	AKAP8	1086	chr19:15490524:-	KRI1	19931	chr19:10675710:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	AKAP8->A-kinase_anchoring_protein_8,chr19:15464196-15490609:-,KRI1->KRI1_homolog,chr19:10663761-10676713:-	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	ATE1--UBAP2L	2	0	ATE1	1958	chr10:123687359:-	UBAP2L	25117	chr1:154197560:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	ATE1->arginyltransferase_1,chr10:123499939-123688316:-,UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	BRWD1--HLCS	2	0	BRWD1	22203	chr21:40619627:-	HLCS	68824	chr21:38269431:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	{Klijn_CCL:Breast=1},BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,HLCS->chr21:38123189-38362536:-,holocarboxylase_synthetase	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	CALM2--WDR34	2	0	CALM2	1161	chr2:47403580:-	WDR34	16185	chr9:131403218:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,WDR34->WD_repeat_domain_34,chr9:131395940-131419066:-	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	FAAH2--SSX3	1	4	FAAH2	2395	chrX:57319013:+	SSX3	20463	chrX:48211584:-	ONLY_REF_SPLICE	YES	18	1	0.22	0.83	0.0126	0.0506	FAAH2->chrX:57313139-57515629:+,fatty_acid_amide_hydrolase_2,SSX3->chrX:48205863-48216142:-,synovial_sarcoma,_X_breakpoint_3	HCC1954_BREAST	0.22	0.83	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	HKR1--MRPL48	2	0	HKR1	10392	chr19:37826159:+	MRPL48	36424	chr11:73555852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	HKR1->HKR1,_GLI-Kruppel_zinc_finger_family_member,Oncogene{Bushman},chr19:37803739-37860267:+,MRPL48->chr11:73498361-73576178:+,mitochondrial_ribosomal_protein_L48	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	IL10RB--AP001596.6	1	4	IL10RB	1157	chr21:34638819:+	AP001596.6	16494	chr21:27760043:+	ONLY_REF_SPLICE	YES	56	0	0.08	1	0.0126	0.0506	IL10RB->chr21:34638663-34669539:+,interleukin_10_receptor_subunit_beta,AP001596.6->chr21:27750871-27844017:+	HCC1954_BREAST	0.08	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	KIAA1217--NUSAP1	2	0	KIAA1217	10097	chr10:24669996:+	NUSAP1	50319	chr15:41667910:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	KIAA1217->KIAA1217,chr10:23983675-24836772:+,NUSAP1->chr15:41624892-41673248:+,nucleolar_and_spindle_associated_protein_1	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	MRPS14--RFWD2	2	0	MRPS14	3492	chr1:174983809:-	RFWD2	21841	chr1:176085817:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	MRPS14->chr1:174979925-174992561:-,mitochondrial_ribosomal_protein_S14,RFWD2->chr1:175913967-176176629:-,ring_finger_and_WD_repeat_domain_2	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	NDUFC1--COMMD10	2	0	NDUFC1	1136	chr4:140223570:-	COMMD10	16567	chr5:115423194:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-,COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	RBM5--CHORDC1	2	0	RBM5	2544	chr3:50127884:+	CHORDC1	43372	chr11:89936595:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	RBM5->Oncogene{Bushman},RNA_binding_motif_protein_5,chr3:50126341-50156454:+,CHORDC1->chr11:89934328-89956532:-,cysteine_and_histidine_rich_domain_containing_1	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	RP11-114H23.1--RP11-114H23.2	1	4	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0126	0.0506	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC1954_BREAST	1	1	0.0632	FALSE	81	155	12	160	0	FALSE	ACH-000859
HCC1954_BREAST	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HCC1954_BREAST	1	1	0.0253	TRUE	6	15	3	35	0	FALSE	ACH-000859
HCC1954_BREAST	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HCC1954_BREAST	1	1	0.0253	TRUE	4	2	0	28	0	FALSE	ACH-000859
HCC1954_BREAST	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HCC1954_BREAST	1	1	0.0253	TRUE	0	2	1	13	0	FALSE	ACH-000859
HCC1954_BREAST	SLC6A20--FYCO1	2	0	SLC6A20	5788	chr3:45821501:-	FYCO1	32909	chr3:46006617:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	SLC6A20->chr3:45796942-45838027:-,solute_carrier_family_6_member_20,FYCO1->FYVE_and_coiled-coil_domain_containing_1,chr3:45959396-46037316:-	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	SRCAP--STARD7	2	0	SRCAP	1253	chr16:30709782:+	STARD7	40465	chr2:96853039:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	SRCAP->Snf2-related_CREBBP_activator_protein,chr16:30709530-30755602:+,STARD7->StAR_related_lipid_transfer_domain_containing_7,chr2:96850597-96874563:-	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	TRMT44--SKIL	2	0	TRMT44	4407	chr4:8443168:+	SKIL	27770	chr3:170077487:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	TRMT44->chr4:8437867-8495258:+,tRNA_methyltransferase_44_homolog_(S._cerevisiae),SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	ZNF790--IGFL4	2	0	ZNF790	1786	chr19:37340904:-	IGFL4	15050	chr19:46563551:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	ZNF790->chr19:37308330-37341689:-,zinc_finger_protein_790,IGFL4->IGF_like_family_member_4,chr19:46543006-46580376:-	HCC1954_BREAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	CTC-338M12.4--LINC00964	1	2	CTC-338M12.4	1864	chr5:180674386:+	LINC00964	11905	chr8:125953705:+	ONLY_REF_SPLICE	NO	27	3	0.1	0.5	0.0126	0.0253	CTC-338M12.4->chr5:180673523-180699168:+,LINC00964->chr8:125860979-125966570:+,long_intergenic_non-protein_coding_RNA_964	HCC1954_BREAST	0.1	0.5	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	AC093642.5--BNC2	1	1	AC093642.5	9202	chr2:243081039:+	BNC2	21535	chr9:16583083:-	ONLY_REF_SPLICE	YES	2	6	0.5	0.25	0.0126	0.0126	AC093642.5->chr2:243030784-243102304:+,BNC2->basonuclin_2,chr9:16409501-16870841:-	HCC1954_BREAST	0.25	0.5	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	DNM2--WIZ	1	1	DNM2	28284	chr19:10923053:+	WIZ	46663	chr19:15547940:-	ONLY_REF_SPLICE	YES	426	1	0	0.67	0.0126	0.0126	DNM2->chr19:10828755-10944164:+,dynamin_2,WIZ->chr19:15532319-15560762:-,widely_interspaced_zinc_finger_motifs	HCC1954_BREAST	0	0.67	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000859
HCC1954_BREAST	GALK2--COPS2	1	1	GALK2	4967	chr15:49462572:+	COPS2	30945	chr15:49437275:-	ONLY_REF_SPLICE	YES	59	3	0.03	0.4	0.0126	0.0126	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},NEIGHBORS_OVERLAP:+:-:[5],GALK2->chr15:49447853-49660066:+,galactokinase_2,COPS2->COP9_signalosome_subunit_2,Oncogene{Bushman},chr15:49398268-49447858:-	HCC1954_BREAST	0.03	0.4	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000859
HCC1954_BREAST	NDUFC1--COMMD10	1	1	NDUFC1	2950	chr4:140221756:-	COMMD10	16567	chr5:115423194:+	ONLY_REF_SPLICE	YES	14	14	0.12	0.12	0.0126	0.0126	NDUFC1->NADH:ubiquinone_oxidoreductase_subunit_C1,chr4:140188034-140223705:-,COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+	HCC1954_BREAST	0.12	0.12	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	94	0.33	0.02	0.0126	0.0126	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC1954_BREAST	0.02	0.33	0.0252	FALSE	16	356	14	466	0	FALSE	ACH-000859
HCC1954_BREAST	RP11-649G15.2--PDCD6	1	1	RP11-649G15.2	3415	chr8:107534949:-	PDCD6	8595	chr5:272826:+	ONLY_REF_SPLICE	YES	0	448	1	0	0.0126	0.0126	RP11-649G15.2->chr8:107532702-107669776:-,PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6	HCC1954_BREAST	0	1	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000859
HCC1954_BREAST	RPTOR--USP6	1	1	RPTOR	1973	chr17:78519591:+	USP6	76037	chr17:5064823:+	ONLY_REF_SPLICE	YES	41	0	0.05	1	0.0126	0.0126	RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1,USP6->Oncogene{Bushman},chr17:5019733-5078329:+,ubiquitin_specific_peptidase_6	HCC1954_BREAST	0.05	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000859
HCC1954_BREAST	SETX--COL5A1	1	1	SETX	5681	chr9:135218077:-	COL5A1	48794	chr9:137619112:+	ONLY_REF_SPLICE	NO	31	38	0.06	0.05	0.0126	0.0126	SETX->chr9:135136743-135230372:-,senataxin,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1	HCC1954_BREAST	0.05	0.06	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-000859
HCC1954_BREAST	STARD3--GSDMB	1	1	STARD3	4450	chr17:37810003:+	GSDMB	18811	chr17:38068750:-	ONLY_REF_SPLICE	NO	4125	1074	0	0	0.0126	0.0126	STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+,GSDMB->chr17:38060848-38076107:-,gasdermin_B	HCC1954_BREAST	0	0	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000859
HCC1954_BREAST	TM9SF2--UBAC2	1	1	TM9SF2	1361	chr13:100154031:+	UBAC2	36769	chr13:99992574:+	ONLY_REF_SPLICE	YES	388	160	0.01	0.01	0.0126	0.0126	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},TM9SF2->chr13:100153671-100216260:+,transmembrane_9_superfamily_member_2,UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+	HCC1954_BREAST	0.01	0.01	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000859
HCC1954_BREAST	UBE4B--NMNAT1	1	1	UBE4B	3050	chr1:10132272:+	NMNAT1	40530	chr1:10032076:+	ONLY_REF_SPLICE	YES	70	3	0.03	0.4	0.0126	0.0126	LOCAL_REARRANGEMENT:+:[47331],UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B,NMNAT1->chr1:10003486-10045559:+,nicotinamide_nucleotide_adenylyltransferase_1	HCC1954_BREAST	0.03	0.4	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-000859
LN18_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	76	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0548	0.2637	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	1.3185	TRUE	508	994	45	981	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	NUP93--CYB5B	57	23	NUP93	11281	chr16:56839544:+	CYB5B	32910	chr16:69481053:+	ONLY_REF_SPLICE	YES	127	837	0.39	0.09	0.7911	0.3192	{Klijn_CCL:Brain=1},NUP93->ArcherDX_panel,FoundationOne_panel,chr16:56764017-56878797:+,nucleoporin_93kDa,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	LN18_CENTRAL_NERVOUS_SYSTEM	0.09	0.39	1.1103	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	FBRS--AFG3L1P	32	70	FBRS	3903	chr16:30672654:+	AFG3L1P	26366	chr16:90057274:+	ONLY_REF_SPLICE	YES	54	56	0.65	0.65	0.4441	0.9715	FBRS->chr16:30669752-30682135:+,fibrosin,AFG3L1P->AFG3_like_matrix_AAA_peptidase_subunit_1,_pseudogene,chr16:90038994-90068569:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.65	0.65	1.4156	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	45	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	169	2	0.22	0.96	0.6245	0.0278	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LN18_CENTRAL_NERVOUS_SYSTEM	0.22	0.96	0.6523	TRUE	519	3926	326	965	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	45	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6245	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.6245	TRUE	0	0	0	518	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	41	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	32	1	0.6	0.569	0.111	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.6	1	0.68	TRUE	465	1949	224	605	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	FTO--RBFOX1	36	4	FTO	15028	chr16:53968021:+	RBFOX1	33431	chr16:6366996:+	ONLY_REF_SPLICE	YES	84	0	0.32	1	0.4996	0.0555	FTO->chr16:53737875-54155853:+,fat_mass_and_obesity_associated,RBFOX1->RNA_binding_protein,_fox-1_homolog_1,chr16:6069095-7763340:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.32	1	0.5551	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	28	16	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.88	0.3886	0.2221	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.6107	TRUE	458	1351	185	561	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	21	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	20	1	0.53	0.2915	0.0278	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.53	1	0.3193	TRUE	347	1186	183	220	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	20	2	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2776	0.0278	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.3054	TRUE	6	15	3	35	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-344E13.3--UBBP4	14	25	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	63	0	0.38	1	0.1943	0.347	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	LN18_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.5413	TRUE	23	13	0	54	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	STX17--NR4A3	18	6	STX17	5980	chr9:102691125:+	NR4A3	27210	chr9:102606931:+	ONLY_REF_SPLICE	YES	12	0	0.67	1	0.2498	0.0833	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[39742],STX17->chr9:102668915-102732618:+,syntaxin_17,NR4A3->Oncogene{Bushman},chr9:102584137-102629173:+,nuclear_receptor_subfamily_4_group_A_member_3	LN18_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.3331	TRUE	0	1	0	1	1	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	PRSS23--RP11-317J19.1	17	7	PRSS23	8412	chr11:86534635:+	RP11-317J19.1	25495	chr11:86333767:+	ONLY_REF_SPLICE	YES	16	0	0.6	1	0.2359	0.0972	PRSS23->chr11:86502101-86663952:+,protease,_serine_23,RP11-317J19.1->chr11:86142632-86333909:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.6	1	0.3331	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	AHRR--CES5AP1	15	4	AHRR	7866	chr5:376831:+	CES5AP1	30342	chr22:23712649:-	ONLY_REF_SPLICE	YES	26	0	0.42	1	0.2082	0.0555	AHRR->aryl-hydrocarbon_receptor_repressor,chr5:304291-438406:+,CES5AP1->carboxylesterase_5A_pseudogene_1,chr22:23701790-23729918:-	LN18_CENTRAL_NERVOUS_SYSTEM	0.42	1	0.2637	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	15	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2082	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.2082	TRUE	402	216	10	229	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	FBRS--AFG3L1P	3	43	FBRS	3785	chr16:30672536:+	AFG3L1P	26366	chr16:90057274:+	ONLY_REF_SPLICE	YES	54	56	0.46	0.45	0.0416	0.5968	FBRS->chr16:30669752-30682135:+,fibrosin,AFG3L1P->AFG3_like_matrix_AAA_peptidase_subunit_1,_pseudogene,chr16:90038994-90068569:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.45	0.46	0.6384	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	9	15	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	34	60	0.41	0.29	0.1249	0.2082	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LN18_CENTRAL_NERVOUS_SYSTEM	0.29	0.41	0.3331	TRUE	267	562	48	632	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RAB11FIP3--FBRS	12	3	RAB11FIP3	7902	chr16:539000:+	FBRS	30602	chr16:30677833:+	ONLY_REF_SPLICE	YES	44	72	0.25	0.17	0.1665	0.0416	RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+,FBRS->chr16:30669752-30682135:+,fibrosin	LN18_CENTRAL_NERVOUS_SYSTEM	0.17	0.25	0.2081	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	FBRS--AFG3L1P	5	29	FBRS	3012	chr16:30671763:+	AFG3L1P	26366	chr16:90057274:+	ONLY_REF_SPLICE	YES	51	56	0.4	0.38	0.0694	0.4025	FBRS->chr16:30669752-30682135:+,fibrosin,AFG3L1P->AFG3_like_matrix_AAA_peptidase_subunit_1,_pseudogene,chr16:90038994-90068569:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.38	0.4	0.4719	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-314O13.1--RP11-354I13.2	12	0	RP11-314O13.1	1091	chr16:80926402:-	RP11-354I13.2	13403	chr16:60398721:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1665	0	RP11-314O13.1->chr16:80862632-80926492:-,RP11-354I13.2->chr16:60393746-60476149:+	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.1665	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	8	14	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	33	61	0.4	0.27	0.111	0.1943	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LN18_CENTRAL_NERVOUS_SYSTEM	0.27	0.4	0.3053	TRUE	267	562	48	632	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	STX17--INVS	11	2	STX17	5980	chr9:102691125:+	INVS	29208	chr9:102988344:+	ONLY_REF_SPLICE	YES	12	14	0.52	0.48	0.1527	0.0278	{Klijn_CCL:Brain=1},STX17->chr9:102668915-102732618:+,syntaxin_17,INVS->chr9:102861538-103063282:+,inversin	LN18_CENTRAL_NERVOUS_SYSTEM	0.48	0.52	0.1805	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	8	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.111	0.0139	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.1249	FALSE	462	80	0	856	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	BANP--LONP2	8	0	BANP	21949	chr16:88052273:+	LONP2	36598	chr16:48286042:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.111	0	BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+,LONP2->chr16:48278207-48397033:+,lon_peptidase_2,_peroxisomal	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.111	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	HIATL1--RP11-307E17.8	7	4	HIATL1	4664	chr9:97200810:+	RP11-307E17.8	19630	chr9:97101118:+	ONLY_REF_SPLICE	YES	83	0	0.12	1	0.0972	0.0555	GTEx_FI:{Small_Intestine=[count:1=pct:1.8],Skin=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:+:[13603],HIATL1->chr9:97136833-97223324:+,RP11-307E17.8->chr9:97094758-97123230:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.12	1	0.1527	TRUE	3	6	0	6	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	7	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	3	1	0.77	0.0972	0.0416	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.77	1	0.1388	FALSE	515	4851	409	746	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	6	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0833	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.0833	TRUE	0	16	0	53	13	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	CMTM4--CPPED1	5	2	CMTM4	2545	chr16:66670308:-	CPPED1	16429	chr16:12875260:-	ONLY_REF_SPLICE	YES	18	115	0.28	0.06	0.0694	0.0278	CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,CPPED1->calcineurin_like_phosphoesterase_domain_containing_1,chr16:12756919-12897874:-	LN18_CENTRAL_NERVOUS_SYSTEM	0.06	0.28	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	PUS1--ULK1	3	9	PUS1	5358	chr12:132423820:+	ULK1	26270	chr12:132403726:+	INCL_NON_REF_SPLICE	YES	56	29	0.18	0.29	0.0416	0.1249	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[6033],PUS1->chr12:132413745-132428406:+,pseudouridylate_synthase_1,ULK1->chr12:132379196-132407712:+,unc-51_like_autophagy_activating_kinase_1	LN18_CENTRAL_NERVOUS_SYSTEM	0.18	0.29	0.1665	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	5	1	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0694	0.0139	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.0833	TRUE	4	2	0	28	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	FBRS--AFG3L1P	1	15	FBRS	3903	chr16:30672654:+	AFG3L1P	26729	chr16:90057637:+	ONLY_REF_SPLICE	YES	54	74	0.23	0.18	0.0139	0.2082	FBRS->chr16:30669752-30682135:+,fibrosin,AFG3L1P->AFG3_like_matrix_AAA_peptidase_subunit_1,_pseudogene,chr16:90038994-90068569:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.18	0.23	0.2221	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	PUS1--ULK1	4	3	PUS1	5358	chr12:132423820:+	ULK1	27068	chr12:132404524:+	ONLY_REF_SPLICE	YES	56	73	0.11	0.09	0.0555	0.0416	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[6033],PUS1->chr12:132413745-132428406:+,pseudouridylate_synthase_1,ULK1->chr12:132379196-132407712:+,unc-51_like_autophagy_activating_kinase_1	LN18_CENTRAL_NERVOUS_SYSTEM	0.09	0.11	0.0971	TRUE	0	0	0	1	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	PUS1--ULK1	4	3	PUS1	5358	chr12:132423820:+	ULK1	26561	chr12:132404017:+	ONLY_REF_SPLICE	YES	56	41	0.11	0.15	0.0555	0.0416	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[6033],PUS1->chr12:132413745-132428406:+,pseudouridylate_synthase_1,ULK1->chr12:132379196-132407712:+,unc-51_like_autophagy_activating_kinase_1	LN18_CENTRAL_NERVOUS_SYSTEM	0.11	0.15	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-476K15.1--CTD-2015H3.2	4	3	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	4	0	0.64	1	0.0555	0.0416	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.64	1	0.0971	FALSE	0	46	0	73	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	AC004158.2--RP11-434E6.2	4	2	AC004158.2	9795	chr16:72556452:-	RP11-434E6.2	19753	chr16:54401571:-	INCL_NON_REF_SPLICE	YES	13	0	0.32	1	0.0555	0.0278	AC004158.2->chr16:72459384-72698908:-,RP11-434E6.2->chr16:54399919-54404611:-	LN18_CENTRAL_NERVOUS_SYSTEM	0.32	1	0.0833	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	PANX2--PI4KA	3	6	PANX2	6291	chr22:50618381:+	PI4KA	42447	chr22:21088841:-	INCL_NON_REF_SPLICE	YES	10	36	0.47	0.2	0.0416	0.0833	PANX2->chr22:50609160-50618723:+,pannexin_2,PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha	LN18_CENTRAL_NERVOUS_SYSTEM	0.2	0.47	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	PANX2--PI4KA	3	5	PANX2	5592	chr22:50617682:+	PI4KA	42447	chr22:21088841:-	INCL_NON_REF_SPLICE	YES	15	36	0.35	0.18	0.0416	0.0694	PANX2->chr22:50609160-50618723:+,pannexin_2,PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha	LN18_CENTRAL_NERVOUS_SYSTEM	0.18	0.35	0.111	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0.0694	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.111	FALSE	407	2205	196	549	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.0555	FALSE	462	80	0	856	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-662B19.2--WDR37	4	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0555	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.0555	TRUE	31	42	1	25	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	STX17--INVS	3	4	STX17	5980	chr9:102691125:+	INVS	28120	chr9:102977683:+	ONLY_REF_SPLICE	YES	12	15	0.37	0.32	0.0416	0.0555	{Klijn_CCL:Brain=1},STX17->chr9:102668915-102732618:+,syntaxin_17,INVS->chr9:102861538-103063282:+,inversin	LN18_CENTRAL_NERVOUS_SYSTEM	0.32	0.37	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-476K15.1--CTD-2015H3.2	3	3	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	4	0	0.6	1	0.0416	0.0416	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.6	1	0.0832	FALSE	0	46	0	73	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	3	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0.0278	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.0694	TRUE	477	1352	189	275	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	FBRS--AFG3L1P	2	5	FBRS	3012	chr16:30671763:+	AFG3L1P	26729	chr16:90057637:+	ONLY_REF_SPLICE	YES	51	74	0.12	0.09	0.0278	0.0694	FBRS->chr16:30669752-30682135:+,fibrosin,AFG3L1P->AFG3_like_matrix_AAA_peptidase_subunit_1,_pseudogene,chr16:90038994-90068569:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.09	0.12	0.0972	TRUE	0	0	0	1	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	HSD17B2--CDH1	3	0	HSD17B2	1686	chr16:82069294:+	CDH1	17796	chr16:68835573:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	{Klijn_CCL:Brain=1},HSD17B2->chr16:82068609-82132139:+,hydroxysteroid_(17-beta)_dehydrogenase_2,CDH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cadherin_1,chr16:68771128-68869451:+	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.0416	FALSE	292	1546	117	613	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	PUS1--ULK1	1	8	PUS1	5358	chr12:132423820:+	ULK1	26301	chr12:132403757:+	ONLY_REF_SPLICE	YES	56	28	0.14	0.24	0.0139	0.111	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[6033],PUS1->chr12:132413745-132428406:+,pseudouridylate_synthase_1,ULK1->chr12:132379196-132407712:+,unc-51_like_autophagy_activating_kinase_1	LN18_CENTRAL_NERVOUS_SYSTEM	0.14	0.24	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	AC004158.2--RP11-434E6.2	2	2	AC004158.2	9016	chr16:72557231:-	RP11-434E6.2	19753	chr16:54401571:-	ONLY_REF_SPLICE	YES	8	0	0.33	1	0.0278	0.0278	AC004158.2->chr16:72459384-72698908:-,RP11-434E6.2->chr16:54399919-54404611:-	LN18_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	2	2	CTD-2337A12.1	7488	chr5:95966789:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	20	1	0.17	0.0278	0.0278	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.17	1	0.0556	TRUE	18	50	10	12	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	PVRL3--CD96	2	2	PVRL3	17322	chr3:110866331:+	CD96	24930	chr3:111083360:+	ONLY_REF_SPLICE	YES	49	0	0.08	1	0.0278	0.0278	PROTCLUST,NEIGHBORS[17156],PVRL3->chr3:110788918-110994410:+,CD96->CD96_molecule,chr3:111011566-111384597:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.0556	FALSE	0	0	0	2	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RAB11FIP3--FBRS	2	2	RAB11FIP3	7902	chr16:539000:+	FBRS	31410	chr16:30678641:+	ONLY_REF_SPLICE	YES	44	81	0.08	0.05	0.0278	0.0278	RAB11FIP3->RAB11_family_interacting_protein_3,chr16:475619-573011:+,FBRS->chr16:30669752-30682135:+,fibrosin	LN18_CENTRAL_NERVOUS_SYSTEM	0.05	0.08	0.0556	TRUE	0	0	0	1	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	GNGT1--AC002076.10	2	1	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	5	0	0.38	1	0.0278	0.0139	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.0417	FALSE	0	28	0	37	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	PDHX--CD44	2	1	PDHX	10190	chr11:34999729:+	CD44	37425	chr11:35236399:+	ONLY_REF_SPLICE	YES	110	1981	0.03	0	0.0278	0.0139	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	LN18_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0417	FALSE	0	0	0	1	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-435B5.4--MCPH1	2	1	RP11-435B5.4	4638	chr1:143462284:-	MCPH1	36657	chr8:6478975:+	ONLY_REF_SPLICE	YES	8	18	0.27	0.14	0.0278	0.0139	RP11-435B5.4->chr1:143354963-143467632:-,MCPH1->Oncogene{Bushman},chr8:6264113-6501144:+,microcephalin_1	LN18_CENTRAL_NERVOUS_SYSTEM	0.14	0.27	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-435B5.4--MCPH1	2	1	RP11-435B5.4	2843	chr1:143465380:-	MCPH1	36657	chr8:6478975:+	ONLY_REF_SPLICE	YES	8	18	0.27	0.14	0.0278	0.0139	RP11-435B5.4->chr1:143354963-143467632:-,MCPH1->Oncogene{Bushman},chr8:6264113-6501144:+,microcephalin_1	LN18_CENTRAL_NERVOUS_SYSTEM	0.14	0.27	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0139	0.0694	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.0833	FALSE	192	492	57	212	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	UVSSA--CTBP1	2	1	UVSSA	7499	chr4:1349033:+	CTBP1	24040	chr4:1235307:-	ONLY_REF_SPLICE	YES	14	20	0.18	0.13	0.0278	0.0139	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	LN18_CENTRAL_NERVOUS_SYSTEM	0.13	0.18	0.0417	TRUE	23	5	0	14	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	MNAT1--SLC38A6	2	0	MNAT1	8799	chr14:61285565:+	SLC38A6	38791	chr14:61545548:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	NEIGHBORS[11161],MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+,SLC38A6->chr14:61447832-61550451:+,solute_carrier_family_38_member_6	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	FALSE	0	1	0	2	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	NAA25--ATXN2	2	0	NAA25	1307	chr12:112546520:-	ATXN2	59283	chr12:111908546:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,ATXN2->ataxin_2,chr12:111890018-112037480:-	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	NRG2--UBE2D2	1	4	NRG2	1930	chr5:139421955:-	UBE2D2	25002	chr5:138994171:+	ONLY_REF_SPLICE	YES	7	135	0.42	0.04	0.0139	0.0555	{Klijn_CCL:Brain=1},NRG2->chr5:139226364-139422884:-,neuregulin_2,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	LN18_CENTRAL_NERVOUS_SYSTEM	0.04	0.42	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	FALSE	125	705	46	456	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	PDHX--CD44	2	0	PDHX	3068	chr11:34953031:+	CD44	20666	chr11:35198122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	5	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	7	2	11	5	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	53	396	64	110	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	STX17--INVS	1	4	STX17	5980	chr9:102691125:+	INVS	27644	chr9:102977207:+	ONLY_REF_SPLICE	NO	12	12	0.29	0.29	0.0139	0.0555	{Klijn_CCL:Brain=1},STX17->chr9:102668915-102732618:+,syntaxin_17,INVS->chr9:102861538-103063282:+,inversin	LN18_CENTRAL_NERVOUS_SYSTEM	0.29	0.29	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	CTC-786C10.1--GSE1	1	2	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	NO	1	32	0.75	0.09	0.0139	0.0278	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN18_CENTRAL_NERVOUS_SYSTEM	0.09	0.75	0.0417	TRUE	2	3	0	21	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0.0278	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN18_CENTRAL_NERVOUS_SYSTEM	1	1	0.0417	TRUE	160	277	29	98	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	1	1	CD44	4202	chr11:35201954:+	PDHX	42230	chr11:35013862:+	ONLY_REF_SPLICE	YES	2196	147	0	0.01	0.0139	0.0139	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	LN18_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0278	FALSE	0	1	0	1	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	DAG1--RHOA	1	1	DAG1	2645	chr3:49507866:+	RHOA	26773	chr3:49397815:-	ONLY_REF_SPLICE	NO	106	1458	0.02	0	0.0139	0.0139	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[55715],DAG1->chr3:49506146-49573048:+,dystroglycan_1,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	LN18_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	HP1BP3--EIF4G3	1	1	HP1BP3	1129	chr1:21113688:-	EIF4G3	28440	chr1:21415706:-	ONLY_REF_SPLICE	YES	52	3	0.04	0.4	0.0139	0.0139	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	LN18_CENTRAL_NERVOUS_SYSTEM	0.04	0.4	0.0278	TRUE	0	2	0	6	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	HP1BP3--EIF4G3	1	1	HP1BP3	1129	chr1:21113688:-	EIF4G3	32106	chr1:21329301:-	ONLY_REF_SPLICE	NO	52	81	0.04	0.02	0.0139	0.0139	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	LN18_CENTRAL_NERVOUS_SYSTEM	0.02	0.04	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.0139	0.0139	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN18_CENTRAL_NERVOUS_SYSTEM	0.4	1	0.0278	FALSE	164	806	69	479	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	RP11-142I20.1--PRIM2	1	1	RP11-142I20.1	1186	chr18:39211964:-	PRIM2	35368	chr6:57467080:+	ONLY_REF_SPLICE	YES	4	48	0.33	0.04	0.0139	0.0139	RP11-142I20.1->chr18:39047395-39212149:-,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	LN18_CENTRAL_NERVOUS_SYSTEM	0.04	0.33	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	UVSSA--CTBP1	1	1	UVSSA	8854	chr4:1360219:+	CTBP1	24040	chr4:1235307:-	ONLY_REF_SPLICE	NO	16	20	0.11	0.09	0.0139	0.0139	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	LN18_CENTRAL_NERVOUS_SYSTEM	0.09	0.11	0.0278	TRUE	3	0	0	1	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	2057	134	0	0.01	0.0139	0.0139	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	LN18_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0278	FALSE	6	50	7	115	0	FALSE	ACH-000819
LN18_CENTRAL_NERVOUS_SYSTEM	YWHAE--GNAS	1	1	YWHAE	1332	chr17:1303341:-	GNAS	30056	chr20:57470667:+	ONLY_REF_SPLICE	YES	2057	637	0	0	0.0139	0.0139	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Colon_-_Transverse=1},YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	LN18_CENTRAL_NERVOUS_SYSTEM	0	0	0.0278	FALSE	0	6	0	6	1	FALSE	ACH-000819
MDAMB435S_SKIN	TIMM23B--LINC00843	77	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1099	0.2306	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MDAMB435S_SKIN	0.99	1	1.3405	TRUE	508	994	45	981	0	FALSE	ACH-000884
MDAMB435S_SKIN	MT-TA--MT-TC	48	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6919	0.0865	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB435S_SKIN	1	1	0.7784	FALSE	462	80	0	856	0	FALSE	ACH-000884
MDAMB435S_SKIN	TIMM23--RP11-464F9.1	48	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6919	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MDAMB435S_SKIN	1	1	0.6919	TRUE	519	3926	326	965	0	FALSE	ACH-000884
MDAMB435S_SKIN	OR51S1--TP53I11	34	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4901	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	MDAMB435S_SKIN	1	1	0.4901	TRUE	402	216	10	229	0	FALSE	ACH-000884
MDAMB435S_SKIN	FAM91A1--SORD	27	14	FAM91A1	11508	chr8:124799613:+	SORD	35331	chr15:45360379:+	ONLY_REF_SPLICE	YES	98	132	0.29	0.24	0.3892	0.2018	FAM91A1->chr8:124780696-124827692:+,family_with_sequence_similarity_91_member_A1,SORD->chr15:45315302-45369383:+,sorbitol_dehydrogenase	MDAMB435S_SKIN	0.24	0.29	0.591	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	ZNF654--HMGB2	30	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4324	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MDAMB435S_SKIN	1	1	0.4324	TRUE	0	0	0	518	0	FALSE	ACH-000884
MDAMB435S_SKIN	RHOA--CTD-2521M24.9	21	12	RHOA	2179	chr3:49449253:-	CTD-2521M24.9	14093	chr19:17516886:+	ONLY_REF_SPLICE	YES	728	95	0.04	0.26	0.3027	0.173	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,CTD-2521M24.9->chr19:17516503-17529713:+	MDAMB435S_SKIN	0.04	0.26	0.4757	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	CCAR2--PPP3CC	18	0	CCAR2	1211	chr8:22462355:+	PPP3CC	26311	chr8:22384905:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2595	0	LOCAL_REARRANGEMENT:+:[63493],CCAR2->cell_cycle_and_apoptosis_regulator_2,chr8:22462145-22479027:+,PPP3CC->chr8:22298332-22398652:+,protein_phosphatase_3_catalytic_subunit_gamma	MDAMB435S_SKIN	1	1	0.2595	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	CTD-2008L17.1--RP11-456O19.2	12	7	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	3	1	0.86	0.95	0.173	0.1009	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	MDAMB435S_SKIN	0.86	0.95	0.2739	FALSE	20	187	4	79	0	FALSE	ACH-000884
MDAMB435S_SKIN	RP11-444D3.1--SOX5	10	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	4	1	0.75	0.1441	0.0288	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MDAMB435S_SKIN	0.75	1	0.1729	TRUE	477	1352	189	275	0	FALSE	ACH-000884
MDAMB435S_SKIN	MT-TA--MT-TC	8	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1153	0.0865	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB435S_SKIN	1	1	0.2018	FALSE	462	80	0	856	0	FALSE	ACH-000884
MDAMB435S_SKIN	C15orf57--CBX3	8	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	45	64	0.22	0.17	0.1153	0.0721	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MDAMB435S_SKIN	0.17	0.22	0.1874	TRUE	267	562	48	632	0	FALSE	ACH-000884
MDAMB435S_SKIN	RP11-96H19.1--RP11-446N19.1	8	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.1153	0.0432	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB435S_SKIN	0.92	1	0.1585	FALSE	515	4851	409	746	0	FALSE	ACH-000884
MDAMB435S_SKIN	CTD-2023N9.1--CTD-2023N9.2	8	1	CTD-2023N9.1	1119	chr5:56691005:+	CTD-2023N9.2	11053	chr5:56910004:+	ONLY_REF_SPLICE	YES	26	3	0.26	0.75	0.1153	0.0144	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	MDAMB435S_SKIN	0.26	0.75	0.1297	FALSE	0	0	0	9	0	FALSE	ACH-000884
MDAMB435S_SKIN	RP11-120D5.1--MID1	8	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	75	0.82	0.11	0.1153	0.0144	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MDAMB435S_SKIN	0.11	0.82	0.1297	FALSE	16	356	14	466	0	FALSE	ACH-000884
MDAMB435S_SKIN	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0865	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MDAMB435S_SKIN	1	1	0.0865	FALSE	13	9	0	364	0	FALSE	ACH-000884
MDAMB435S_SKIN	C15orf57--CBX3	4	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	42	64	0.18	0.12	0.0577	0.0721	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MDAMB435S_SKIN	0.12	0.18	0.1298	TRUE	267	562	48	632	0	FALSE	ACH-000884
MDAMB435S_SKIN	MT-TA--MT-TC	3	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0.0865	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB435S_SKIN	1	1	0.1297	FALSE	462	80	0	856	0	FALSE	ACH-000884
MDAMB435S_SKIN	RP11-141M1.3--STARD13	4	2	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	45	0.86	0.12	0.0577	0.0288	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	MDAMB435S_SKIN	0.12	0.86	0.0865	FALSE	141	264	50	91	0	FALSE	ACH-000884
MDAMB435S_SKIN	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0432	0.0865	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB435S_SKIN	0.9	1	0.1297	FALSE	407	2205	196	549	0	FALSE	ACH-000884
MDAMB435S_SKIN	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0577	0.0144	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB435S_SKIN	1	1	0.0721	FALSE	462	80	0	856	0	FALSE	ACH-000884
MDAMB435S_SKIN	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0432	0.0432	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB435S_SKIN	0.86	1	0.0864	FALSE	467	2173	244	435	0	FALSE	ACH-000884
MDAMB435S_SKIN	RHOA--CTD-2521M24.9	2	6	RHOA	2179	chr3:49449253:-	CTD-2521M24.9	14261	chr19:17517054:+	ONLY_REF_SPLICE	YES	728	104	0.01	0.07	0.0288	0.0865	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,CTD-2521M24.9->chr19:17516503-17529713:+	MDAMB435S_SKIN	0.01	0.07	0.1153	TRUE	0	0	0	1	0	FALSE	ACH-000884
MDAMB435S_SKIN	MT-CO3--MT-ATP6	3	1	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0.0144	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MDAMB435S_SKIN	1	1	0.0576	FALSE	189	492	56	216	0	FALSE	ACH-000884
MDAMB435S_SKIN	EEF2--RPS28	3	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MDAMB435S_SKIN	1	1	0.0432	TRUE	0	0	0	100	0	FALSE	ACH-000884
MDAMB435S_SKIN	HSP90AB1--MT-RNR2	3	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MDAMB435S_SKIN	1	1	0.0432	FALSE	13	9	0	364	0	FALSE	ACH-000884
MDAMB435S_SKIN	PCAT1--RP11-382A18.2	3	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	MDAMB435S_SKIN	1	1	0.0432	TRUE	4	84	1	46	0	FALSE	ACH-000884
MDAMB435S_SKIN	PRR16--CTD-2334D19.1	2	4	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	23	0	0.21	1	0.0288	0.0577	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	MDAMB435S_SKIN	0.21	1	0.0865	FALSE	56	216	12	147	0	FALSE	ACH-000884
MDAMB435S_SKIN	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0.0144	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB435S_SKIN	1	1	0.0432	FALSE	292	1546	117	613	0	FALSE	ACH-000884
MDAMB435S_SKIN	SGSM1--PITPNB	2	1	SGSM1	1216	chr22:25202451:+	PITPNB	44105	chr22:28269803:-	ONLY_REF_SPLICE	YES	0	77	1	0.04	0.0288	0.0144	SGSM1->chr22:25202236-25323545:+,small_G_protein_signaling_modulator_1,PITPNB->chr22:28247657-28316122:-,phosphatidylinositol_transfer_protein_beta	MDAMB435S_SKIN	0.04	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	SUCLG2--RP11-81N13.1	2	1	SUCLG2	9954	chr3:67546222:-	RP11-81N13.1	23581	chr3:67797195:+	ONLY_REF_SPLICE	YES	405	50	0.01	0.06	0.0288	0.0144	LOCAL_INVERSION:-:+:[83],SUCLG2->chr3:67410884-67705038:-,succinate-CoA_ligase_GDP-forming_beta_subunit,RP11-81N13.1->chr3:67705121-67998137:+	MDAMB435S_SKIN	0.01	0.06	0.0432	FALSE	0	0	0	2	0	FALSE	ACH-000884
MDAMB435S_SKIN	CTD-2033A16.3--NQO1	2	0	CTD-2033A16.3	1163	chr16:69761078:+	NQO1	8654	chr16:69748980:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	LOCAL_INVERSION:+:-:[62],CTD-2033A16.3->chr16:69760916-69776466:+,NQO1->NAD(P)H_quinone_dehydrogenase_1,Oncogene{Bushman},chr16:69740899-69760854:-	MDAMB435S_SKIN	1	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	CTD-2033A16.3--NQO1	2	0	CTD-2033A16.3	1163	chr16:69761078:+	NQO1	9768	chr16:69747032:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	LOCAL_INVERSION:+:-:[62],CTD-2033A16.3->chr16:69760916-69776466:+,NQO1->NAD(P)H_quinone_dehydrogenase_1,Oncogene{Bushman},chr16:69740899-69760854:-	MDAMB435S_SKIN	1	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	DDX3X--USP9X	2	0	DDX3X	3430	chrX:41196718:+	USP9X	64955	chrX:41089754:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	LOCAL_REARRANGEMENT:+:[96819],DDX3X->DEAD-box_helicase_3,_X-linked,chrX:41192651-41223725:+,USP9X->chrX:40944888-41095832:+,ubiquitin_specific_peptidase_9,_X-linked	MDAMB435S_SKIN	1	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	DNM2--PKD1	2	0	DNM2	23425	chr19:10916643:+	PKD1	42270	chr16:2169379:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	DNM2->chr19:10828755-10944164:+,dynamin_2,PKD1->chr16:2138711-2185899:-,polycystin_1,_transient_receptor_potential_channel_interacting	MDAMB435S_SKIN	1	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	RP1-1J6.2--ADSL	2	0	RP1-1J6.2	4122	chr20:39762127:-	ADSL	11460	chr22:40745836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	RP1-1J6.2->chr20:39726969-39766643:-,ADSL->adenylosuccinate_lyase,chr22:40742507-40786467:+	MDAMB435S_SKIN	1	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	SH2D3C--SET	2	0	SH2D3C	3882	chr9:130533465:-	SET	26605	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0288	0	SH2D3C->SH2_domain_containing_3C,chr9:130500596-130541020:-,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MDAMB435S_SKIN	1	1	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	CTD-2008L17.1--RP11-456O19.2	1	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	3	1	0.57	0.8	0.0144	0.0432	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	MDAMB435S_SKIN	0.57	0.8	0.0576	FALSE	33	240	4	98	0	FALSE	ACH-000884
MDAMB435S_SKIN	LARGE--SHISA8	1	3	LARGE	8508	chr22:34157358:-	SHISA8	40141	chr22:42307353:-	ONLY_REF_SPLICE	YES	15	0	0.21	1	0.0144	0.0432	LARGE->chr22:33558212-34318829:-,like-glycosyltransferase,SHISA8->chr22:42307297-42310570:-,shisa_family_member_8	MDAMB435S_SKIN	0.21	1	0.0576	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	RP11-141M1.3--STARD13	1	2	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	45	1	0.06	0.0144	0.0288	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	MDAMB435S_SKIN	0.06	1	0.0432	FALSE	49	120	16	70	0	FALSE	ACH-000884
MDAMB435S_SKIN	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	5	1	0.38	0.0144	0.0288	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MDAMB435S_SKIN	0.38	1	0.0432	TRUE	13	17	1	13	0	FALSE	ACH-000884
MDAMB435S_SKIN	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	4	1	0.43	0.0144	0.0288	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MDAMB435S_SKIN	0.43	1	0.0432	TRUE	274	363	69	150	0	FALSE	ACH-000884
MDAMB435S_SKIN	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	5	1	0.38	0.0144	0.0288	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MDAMB435S_SKIN	0.38	1	0.0432	TRUE	160	277	29	98	0	FALSE	ACH-000884
MDAMB435S_SKIN	DCBLD2--CMSS1	1	1	DCBLD2	6582	chr3:98568305:-	CMSS1	40312	chr3:99865817:+	ONLY_REF_SPLICE	NO	152	547	0.01	0	0.0144	0.0144	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	MDAMB435S_SKIN	0	0.01	0.0288	FALSE	0	0	0	1	0	FALSE	ACH-000884
MDAMB435S_SKIN	DIP2C--ZMYND11	1	1	DIP2C	1250	chr10:735434:-	ZMYND11	52575	chr10:225934:+	ONLY_REF_SPLICE	YES	8	8	0.2	0.2	0.0144	0.0144	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[19553],DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	MDAMB435S_SKIN	0.2	0.2	0.0288	TRUE	0	0	0	5	0	TRUE	ACH-000884
MDAMB435S_SKIN	DIP2C--ZMYND11	1	1	DIP2C	11762	chr10:459853:-	ZMYND11	52575	chr10:225934:+	ONLY_REF_SPLICE	YES	12	8	0.14	0.2	0.0144	0.0144	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[19553],DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	MDAMB435S_SKIN	0.14	0.2	0.0288	TRUE	0	0	0	1	0	TRUE	ACH-000884
MDAMB435S_SKIN	FAM20C--MAD1L1	1	1	FAM20C	5852	chr7:208976:+	MAD1L1	42633	chr7:2108973:-	ONLY_REF_SPLICE	YES	148	39	0.01	0.05	0.0144	0.0144	FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	MDAMB435S_SKIN	0.01	0.05	0.0288	FALSE	0	1	0	1	0	FALSE	ACH-000884
MDAMB435S_SKIN	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0144	0.0144	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB435S_SKIN	0.67	1	0.0288	FALSE	125	705	46	456	0	FALSE	ACH-000884
MDAMB435S_SKIN	SUCLG2--RP11-81N13.1	1	1	SUCLG2	2254	chr3:67659879:-	RP11-81N13.1	21392	chr3:67720240:+	ONLY_REF_SPLICE	NO	346	33	0.01	0.06	0.0144	0.0144	LOCAL_INVERSION:-:+:[83],SUCLG2->chr3:67410884-67705038:-,succinate-CoA_ligase_GDP-forming_beta_subunit,RP11-81N13.1->chr3:67705121-67998137:+	MDAMB435S_SKIN	0.01	0.06	0.0288	FALSE	0	0	0	1	0	FALSE	ACH-000884
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	108	84	ABL1	2970	chr9:133710912:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	26	174	0.88	0.52	1.1286	0.8778	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.88	2.0064	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	98	68	BCR	21553	chr22:23632600:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	198	29	0.46	0.85	1.0241	0.7106	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.85	1.7347	TRUE	0	2	1	16	2	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DPH7--PTP4A3	112	0	DPH7	1297	chr9:140473091:-	PTP4A3	14726	chr8:142431487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1704	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:10=pct:2.7],Heart=[count:7=pct:2.8],Pituitary=[count:4=pct:7.7],Nerve=[count:2=pct:1.2],Esophagus=[count:2=pct:0.5],Colon=[count:2=pct:1.0],Lung=[count:2=pct:1.2],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Kidney=[count:1=pct:7.1],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},GTEx_v2:{count=46;pct=0.53%;dist=Artery_-_Tibial=9,Heart_-_Atrial_Appendage=9,Pituitary=6,Cells_-_EBV-transformed_lymphocytes=5,Artery_-_Aorta=3,Lung=2,Artery_-_Coronary=2,Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hypothalamus=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1,Testis=1},DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7,PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1704	TRUE	29	213	5	17	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	101	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0555	0.2822	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.3377	TRUE	508	994	45	981	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	90	38	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	11	174	0.92	0.42	0.9405	0.3971	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.92	1.3376	TRUE	0	2	0	9	2	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	69	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	299	9	0.2	0.89	0.7211	0.0523	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.89	0.7734	TRUE	519	3926	326	965	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	59	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6166	0.0941	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7107	FALSE	462	80	0	856	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	56	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5852	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5852	TRUE	0	0	0	518	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	38	8	MT-TA	1053	chrM:5603:-	MT-TC	4081	chrM:5815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3971	0.0836	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4807	FALSE	462	80	0	856	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	4	66	BCR	21553	chr22:23632600:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	198	26	0.26	0.73	0.0418	0.6897	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.73	0.7315	TRUE	0	2	1	16	2	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTATP6P1--MT-ND2	16	0	MTATP6P1	1098	chr1:569173:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1672	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1672	FALSE	11	0	0	2	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	14	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1463	0.0314	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.1777	FALSE	499	1288	110	792	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND6	13	6	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	4541	1	0	0.1359	0.0627	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1986	FALSE	26	124	4	93	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	8	21	ABL1	1510	chr9:133589842:+	BCR	43197	chr22:23637211:+	ONLY_REF_SPLICE	YES	11	193	0.72	0.13	0.0836	0.2195	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.72	0.3031	TRUE	0	0	0	6	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	1	48	ABL1	2970	chr9:133710912:+	BCR	43197	chr22:23637211:+	ONLY_REF_SPLICE	YES	26	193	0.65	0.2	0.0105	0.5016	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.65	0.5121	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	12	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1254	0.0314	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.1568	FALSE	499	1288	110	792	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	11	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	36	1	0.25	0.115	0.0105	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.1255	TRUE	458	1351	185	561	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	4	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0941	0.0418	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1359	FALSE	499	1288	110	792	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--B2M	10	0	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1045	0	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1045	TRUE	0	0	0	28	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	10	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1045	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1045	FALSE	0	0	0	189	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	7	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	87	72	0.13	0.15	0.0732	0.0627	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.15	0.1359	TRUE	267	562	48	632	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	8	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0836	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0836	TRUE	1	39	0	134	39	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.0627	0.0732	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	0.1359	FALSE	499	1288	110	792	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	7	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0732	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0732	TRUE	0	0	0	434	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	11	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0418	0.115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.1568	FALSE	499	1288	110	792	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	5	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	202	0	0.05	1	0.0523	0.0627	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.115	FALSE	164	806	69	479	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ND4L	5	4	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1117	0	0.01	1	0.0523	0.0418	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0941	FALSE	1	1	0	107	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTATP6P1--MT-ND2	5	2	MTATP6P1	1153	chr1:569228:+	MT-ND2	5576	chrM:5364:+	INCL_NON_REF_SPLICE	YES	2043	3177	0	0	0.0523	0.0209	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0732	FALSE	11	0	0	2	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	2	12	ABL1	1510	chr9:133589842:+	BCR	48463	chr22:23651611:+	ONLY_REF_SPLICE	YES	11	322	0.56	0.04	0.0209	0.1254	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.56	0.1463	TRUE	0	1	0	5	1	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	86	72	0.09	0.1	0.0418	0.0418	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.1	0.0836	TRUE	267	562	48	632	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL5	5	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0523	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0523	TRUE	0	0	0	39	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0418	0.0418	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.0836	FALSE	515	4851	409	746	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFP36L1--MT-CO3	5	0	ZFP36L1	6970	chr14:69256583:-	MT-CO3	12546	chrM:9576:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0523	0	ZFP36L1->Oncogene{Bushman},ZFP36_ring_finger_protein-like_1,chr14:69254377-69263190:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0523	FALSE	0	0	0	1	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANPEP--MT-ND4L	4	2	ANPEP	16060	chr15:90328379:-	MT-ND4L	19321	chrM:10471:+	INCL_NON_REF_SPLICE	YES	301	0	0.02	1	0.0418	0.0209	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0627	FALSE	0	1	0	16	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	4	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0314	0.0418	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0732	FALSE	499	1288	110	792	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	3	3	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1419	0	0	1	0.0314	0.0314	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0628	FALSE	0	0	0	189	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	61	1850	0.06	0	0.0314	0.0105	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.0419	FALSE	0	0	0	434	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	110	0	0.04	1	0.0314	0.0105	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0419	FALSE	125	705	46	456	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL5	3	0	EIF1	1112	chr17:39845248:+	RPL5	7824	chr1:93297621:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	39	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTATP6P1--MT-ND2	3	0	MTATP6P1	1082	chr1:569157:+	MT-ND2	5507	chrM:5295:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	FALSE	11	0	0	2	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	434	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	93	1	0.03	0.0209	0.0105	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0314	TRUE	465	1949	224	605	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBS--ENG	2	0	CBS	12607	chr21:44483063:-	ENG	33502	chr9:130581111:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	CBS->chr21:44473301-44497053:-,cystathionine-beta-synthase,ENG->chr9:130577291-130617035:-,endoglin	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCPG1--ZADH2	2	0	CCPG1	1290	chr15:55700419:-	ZADH2	28268	chr18:72914295:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-,ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	9	0	44	1	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KAT6B--CUTC	2	0	KAT6B	22968	chr10:76785007:+	CUTC	33134	chr10:101482675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B,CUTC->chr10:101462315-101515891:+,cutC_copper_transporter	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	FALSE	292	1546	117	613	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP4-784A16.5--C10orf54	2	0	RP4-784A16.5	1143	chr1:53794047:+	C10orf54	11307	chr10:73515223:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	RP4-784A16.5->chr1:53793905-53802181:+,C10orf54->chr10:73507316-73533255:-,chromosome_10_open_reading_frame_54	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL8--NARF	2	0	RPL8	2311	chr8:146016662:-	NARF	19623	chr17:80442689:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	RPL8->chr8:146015150-146017972:-,ribosomal_protein_L8,NARF->chr17:80416056-80448413:+,nuclear_prelamin_A_recognition_factor	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBL1XR1--FAM81A	2	0	TBL1XR1	2134	chr3:176914128:-	FAM81A	42359	chr15:59750749:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,FAM81A->chr15:59664892-59815748:+,family_with_sequence_similarity_81_member_A	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBA5--RPS18	2	0	UBA5	2810	chr3:132378894:+	RPS18	18340	chr6:33240405:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	UBA5->chr3:132373290-132396941:+,ubiquitin_like_modifier_activating_enzyme_5,RPS18->chr6:33239787-33244287:+,ribosomal_protein_S18	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB1--BMI1	2	0	ZEB1	1798	chr10:31608221:+	BMI1	31789	chr10:22615360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0209	TRUE	0	0	0	4	0	TRUE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--C9orf3	1	2	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	NO	332	69	0.01	0.04	0.0105	0.0209	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0314	FALSE	53	99	2	44	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL32--RP11-473M20.9	1	2	IL32	3393	chr16:3118240:+	RP11-473M20.9	10459	chr16:3131087:-	ONLY_REF_SPLICE	NO	413	212	0.01	0.01	0.0105	0.0209	NEIGHBORS_OVERLAP:+:-:[4996],IL32->chr16:3115298-3131908:+,interleukin_32,RP11-473M20.9->chr16:3126912-3137101:-	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0314	FALSE	4	0	0	2	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-228N24.2--CTC-228N24.3	1	1	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	0	69	1	0.03	0.0105	0.0105	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.021	TRUE	0	1	0	12	1	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FNDC3B--MBNL1	1	1	FNDC3B	6332	chr3:171851336:+	MBNL1	58076	chr3:152132730:+	ONLY_REF_SPLICE	YES	52	402	0.04	0	0.0105	0.0105	FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NAP1L4--CARS	1	1	NAP1L4	12846	chr11:2991033:-	CARS	39571	chr11:3048027:-	ONLY_REF_SPLICE	YES	718	427	0	0	0.0105	0.0105	LOCAL_REARRANGEMENT:-:[8545],NAP1L4->chr11:2965667-3013607:-,nucleosome_assembly_protein_1_like_4,CARS->Oncogene{Bushman},chr11:3022152-3078843:-,cysteinyl-tRNA_synthetase	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NAP1L4--CARS	1	1	NAP1L4	13918	chr11:2985910:-	CARS	36925	chr11:3050673:-	ONLY_REF_SPLICE	YES	715	454	0	0	0.0105	0.0105	LOCAL_REARRANGEMENT:-:[8545],NAP1L4->chr11:2965667-3013607:-,nucleosome_assembly_protein_1_like_4,CARS->Oncogene{Bushman},chr11:3022152-3078843:-,cysteinyl-tRNA_synthetase	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKDC--MCM4	1	1	PRKDC	32565	chr8:48801575:-	MCM4	98355	chr8:48883901:+	ONLY_REF_SPLICE	YES	135	563	0.01	0	0.0105	0.0105	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[2],PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTTG1IP--SET	1	1	PTTG1IP	1336	chr21:46293417:-	SET	18115	chr9:131453449:+	ONLY_REF_SPLICE	NO	605	794	0	0	0.0105	0.0105	PTTG1IP->Oncogene{Bushman},chr21:46269500-46293752:-,pituitary_tumor-transforming_1_interacting_protein,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	11	0	0.15	1	0.0105	0.0105	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.021	FALSE	16	356	14	466	0	FALSE	ACH-000299
HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RSRC1--SRP9	1	1	RSRC1	14780	chr3:158072697:+	SRP9	24897	chr1:225965637:+	ONLY_REF_SPLICE	YES	191	64	0.01	0.03	0.0105	0.0105	RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	HNT34_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000299
HCC56_LARGE_INTESTINE	TIMM23B--LINC00843	133	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.98	1.4619	0.3188	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC56_LARGE_INTESTINE	0.98	1	1.7807	TRUE	508	994	45	981	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MADD--WAPAL	111	23	MADD	25698	chr11:47336878:+	WAPAL	55716	chr10:88197772:-	ONLY_REF_SPLICE	YES	83	83	0.62	0.62	1.2201	0.2528	MADD->MAP_kinase_activating_death_domain,chr11:47290712-47351582:+,WAPAL->chr10:88195013-88281572:-	HCC56_LARGE_INTESTINE	0.62	0.62	1.4729	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	114	3	MT-ATP6	1082	chrM:8608:+	MT-CO1	4674	chrM:5896:+	INCL_NON_REF_SPLICE	YES	187	0	0.38	1	1.2531	0.033	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0.38	1	1.2861	FALSE	182	97	9	327	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-TA--MT-TN	104	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1432	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC56_LARGE_INTESTINE	1	1	1.1432	FALSE	369	2501	205	193	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-CO2	91	10	MT-ND5	2667	chrM:14003:+	MT-CO2	5947	chrM:7720:+	INCL_NON_REF_SPLICE	YES	1691	51	0.06	0.66	1.0003	0.1099	LOCAL_REARRANGEMENT:+:[4068],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.06	0.66	1.1102	FALSE	7	5	0	9	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	TIMM23--RP11-464F9.1	76	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	270	4	0.23	0.95	0.8354	0.033	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC56_LARGE_INTESTINE	0.23	0.95	0.8684	TRUE	519	3926	326	965	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	238	MT-ND4	1960	chrM:11719:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	20422	0	0.01	1	0.044	2.6161	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.01	1	2.6601	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	241	MT-ND4	1967	chrM:11726:+	MT-ND4L	5384	chrM:10475:+	INCL_NON_REF_SPLICE	YES	19851	0	0.01	1	0.033	2.6491	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.01	1	2.6821	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	240	MT-ND4	1937	chrM:11696:+	MT-ND4L	5386	chrM:10477:+	INCL_NON_REF_SPLICE	YES	20341	0	0.01	1	0.033	2.6381	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.01	1	2.6711	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	231	MT-ND4	1299	chrM:11058:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	NO	183	0	0.56	1	0.055	2.5392	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.56	1	2.5942	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	238	MT-ND4	1809	chrM:11568:+	MT-ND4L	5399	chrM:10490:+	INCL_NON_REF_SPLICE	YES	10950	0	0.02	1	0.033	2.6161	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.02	1	2.6491	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	238	MT-ND4	1959	chrM:11718:+	MT-ND4L	5446	chrM:10537:+	INCL_NON_REF_SPLICE	YES	20202	0	0.01	1	0.033	2.6161	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.01	1	2.6491	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	234	MT-ND4	1318	chrM:11077:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	210	0	0.53	1	0.044	2.5721	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.53	1	2.6161	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	237	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	1137	0	0.17	1	0.033	2.6051	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.17	1	2.6381	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	232	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	80	0	0.75	1	0.044	2.5502	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.75	1	2.5942	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	232	MT-ND4	1213	chrM:10972:+	MT-ND4L	5376	chrM:10467:+	INCL_NON_REF_SPLICE	YES	78	0	0.75	1	0.044	2.5502	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.75	1	2.5942	FALSE	344	826	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	235	MT-ND4	1724	chrM:11483:+	MT-ND4L	5482	chrM:10573:+	INCL_NON_REF_SPLICE	YES	6292	0	0.04	1	0.033	2.5831	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.04	1	2.6161	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	235	MT-ND4	1754	chrM:11513:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	YES	7556	0	0.03	1	0.033	2.5831	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.03	1	2.6161	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	231	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	64	0	0.79	1	0.044	2.5392	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.79	1	2.5832	FALSE	344	826	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	232	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	80	0	0.75	1	0.033	2.5502	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.75	1	2.5832	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	228	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	39	0	0.86	1	0.044	2.5062	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.86	1	2.5502	FALSE	344	826	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	232	MT-ND4	1250	chrM:11009:+	MT-ND4L	5458	chrM:10549:+	INCL_NON_REF_SPLICE	YES	114	0	0.67	1	0.033	2.5502	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.67	1	2.5832	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	230	MT-ND4	1284	chrM:11043:+	MT-ND4L	5537	chrM:10628:+	INCL_NON_REF_SPLICE	YES	169	1	0.58	1	0.033	2.5282	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.58	1	2.5612	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	230	MT-ND4	1184	chrM:10943:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	56	0	0.81	1	0.033	2.5282	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.81	1	2.5612	FALSE	344	826	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	230	MT-ND4	1220	chrM:10979:+	MT-ND4L	5536	chrM:10627:+	INCL_NON_REF_SPLICE	YES	80	0	0.74	1	0.033	2.5282	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.74	1	2.5612	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	60	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15747	0	0	1	0.6595	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.6705	FALSE	230	193	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	226	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	26	0	0.9	1	0.033	2.4842	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.9	1	2.5172	FALSE	344	826	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	OR51S1--TP53I11	59	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6485	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HCC56_LARGE_INTESTINE	1	1	0.6485	TRUE	402	216	10	229	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	55	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	256	15	0.19	0.8	0.6046	0.055	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.19	0.8	0.6596	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	9	171	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	21	0	0.9	1	0.0989	1.8796	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.9	1	1.9785	FALSE	344	821	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	10	162	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	24	0	0.88	1	0.1099	1.7807	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.88	1	1.8906	FALSE	344	826	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	IKBKB--ETV6	38	21	IKBKB	18201	chr8:42180012:+	ETV6	32414	chr12:11979336:+	ONLY_REF_SPLICE	YES	138	33	0.3	0.64	0.4177	0.2308	IKBKB->chr8:42128820-42189973:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_beta,ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+	HCC56_LARGE_INTESTINE	0.3	0.64	0.6485	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	157	MT-ND4	1199	chrM:10958:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	67	0	0.7	1	0.033	1.7258	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.7	1	1.7588	FALSE	344	826	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	41	1	MT-ND4	1151	chrM:10910:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	NO	12173	37	0	0.53	0.4507	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.53	0.4617	FALSE	230	193	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	147	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	195	0	0.43	1	0.033	1.6158	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.43	1	1.6488	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND6--MT-TE	34	9	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3737	0.0989	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC56_LARGE_INTESTINE	1	1	0.4726	FALSE	499	1288	110	792	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-TA--MT-TC	34	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3737	0.0769	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC56_LARGE_INTESTINE	1	1	0.4506	FALSE	462	80	0	856	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	109	MT-ND4	1144	chrM:10903:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	37	0	0.75	1	0.044	1.1981	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.75	1	1.2421	FALSE	344	826	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	111	MT-ND4	1756	chrM:11515:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	7607	0	0.01	1	0.033	1.2201	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.01	1	1.2531	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	21	34	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	78	0	0.41	1	0.2308	0.3737	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.41	1	0.6045	FALSE	344	826	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	26	9	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	20063	0	0	1	0.2858	0.0989	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.3847	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	28	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15846	0	0	1	0.3078	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.3188	FALSE	230	198	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	IKBKB--ETV6	26	8	IKBKB	18201	chr8:42180012:+	ETV6	33569	chr12:11992074:+	ONLY_REF_SPLICE	YES	138	33	0.2	0.51	0.2858	0.0879	IKBKB->chr8:42128820-42189973:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_beta,ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+	HCC56_LARGE_INTESTINE	0.2	0.51	0.3737	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND6--MT-TE	24	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.2638	0.1759	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC56_LARGE_INTESTINE	0.95	1	0.4397	FALSE	499	1288	110	792	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	AKAP13--PDE8A	21	21	AKAP13	1228	chr15:85924029:+	PDE8A	71637	chr15:85619093:+	ONLY_REF_SPLICE	YES	6	42	0.88	0.5	0.2308	0.2308	{Klijn_CCL:Breast=1},AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	HCC56_LARGE_INTESTINE	0.5	0.88	0.4616	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	24	9	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	29	29832	0.53	0	0.2638	0.0989	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.53	0.3627	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	23	10	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4212	1	0.01	0.97	0.2528	0.1099	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0.01	0.97	0.3627	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-TA--MT-TN	8	67	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0879	0.7365	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC56_LARGE_INTESTINE	1	1	0.8244	FALSE	369	2501	205	193	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	20	17	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.2198	0.1869	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0.88	1	0.4067	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	78	MT-CO3	1511	chrM:9717:+	MT-ATP6	4856	chrM:8598:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.044	0.8574	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC56_LARGE_INTESTINE	0.98	1	0.9014	FALSE	189	492	56	216	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	20	14	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19006	2	0	0.94	0.2198	0.1539	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.94	0.3737	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	RP11-123O10.4--GRIP1	22	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2418	0.044	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC56_LARGE_INTESTINE	1	1	0.2858	FALSE	416	2512	207	587	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	14	34	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1019	0	0.04	1	0.1539	0.3737	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.04	1	0.5276	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	67	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	4	0	0.95	1	0.055	0.7365	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC56_LARGE_INTESTINE	0.95	1	0.7915	FALSE	189	492	56	216	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	67	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	NO	4	0	0.95	1	0.055	0.7365	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC56_LARGE_INTESTINE	0.95	1	0.7915	FALSE	189	492	56	216	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	AKAP13--PDE8A	18	14	AKAP13	1228	chr15:85924029:+	PDE8A	73563	chr15:85626787:+	ONLY_REF_SPLICE	YES	6	43	0.84	0.43	0.1979	0.1539	{Klijn_CCL:Breast=1},AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	HCC56_LARGE_INTESTINE	0.43	0.84	0.3518	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	13	34	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1673	0	0.03	1	0.1429	0.3737	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.03	1	0.5166	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-TA--MT-TN	10	44	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1099	0.4837	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC56_LARGE_INTESTINE	1	1	0.5936	FALSE	369	2501	205	193	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	20	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	166	10	0.12	0.7	0.2198	0.033	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.12	0.7	0.2528	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	20	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	314	29311	0.07	0	0.2198	0.022	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.07	0.2418	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	62	MT-CO3	1138	chrM:9344:+	MT-ATP6	4745	chrM:8487:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.055	0.6815	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC56_LARGE_INTESTINE	0.99	1	0.7365	FALSE	189	492	56	216	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-TA--MT-TN	16	18	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1759	0.1979	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC56_LARGE_INTESTINE	1	1	0.3738	FALSE	369	2501	205	193	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	RAD51-AS1--INO80	17	11	RAD51-AS1	1522	chr15:40986784:-	INO80	38242	chr15:41289799:-	ONLY_REF_SPLICE	YES	18	42	0.61	0.4	0.1869	0.1209	RAD51-AS1->RAD51_antisense_RNA_1_(head_to_head),chr15:40978922-40987305:-,INO80->INO80_complex_subunit,chr15:41271078-41408552:-	HCC56_LARGE_INTESTINE	0.4	0.61	0.3078	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	19	2	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	323	29311	0.06	0	0.2088	0.022	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.06	0.2308	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	11	34	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	11924	0	0	1	0.1209	0.3737	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0	1	0.4946	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	11	34	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8983	0	0	1	0.1209	0.3737	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0	1	0.4946	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	60	MT-CO3	1642	chrM:9848:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	0	20	1	0.76	0.044	0.6595	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC56_LARGE_INTESTINE	0.76	1	0.7035	FALSE	189	492	56	216	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	ZNF654--HMGB2	19	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2088	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HCC56_LARGE_INTESTINE	1	1	0.2088	TRUE	0	0	0	518	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-TA--MT-TN	5	54	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0.5936	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC56_LARGE_INTESTINE	1	1	0.6486	FALSE	369	2501	205	193	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	56	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	5	10	0.92	0.86	0.044	0.6156	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC56_LARGE_INTESTINE	0.86	0.92	0.6596	FALSE	189	492	56	216	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	17	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	312	28902	0.06	0	0.1869	0.022	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.06	0.2089	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	13	18	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	468	0	0.06	1	0.1429	0.1979	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0.06	1	0.3408	FALSE	182	97	9	327	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	15	9	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	379	27219	0.06	0	0.1649	0.0989	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.06	0.2638	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	16	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	256	10	0.08	0.68	0.1759	0.055	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.08	0.68	0.2309	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	8	37	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	14	0	0.76	1	0.0879	0.4067	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.76	1	0.4946	FALSE	344	821	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND6--MT-TE	15	9	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1649	0.0989	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC56_LARGE_INTESTINE	1	1	0.2638	FALSE	499	1288	110	792	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	16	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	166	9	0.1	0.68	0.1759	0.033	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.1	0.68	0.2089	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND6--MT-TE	11	23	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1209	0.2528	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC56_LARGE_INTESTINE	1	1	0.3737	FALSE	499	1288	110	792	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-CO3--MT-ATP6	15	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.85	1	0.1649	0.022	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC56_LARGE_INTESTINE	0.85	1	0.1869	FALSE	189	492	56	216	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	KIAA1958--HSDL2	13	9	KIAA1958	3467	chr9:115337531:+	HSDL2	31434	chr9:115216293:+	ONLY_REF_SPLICE	YES	25	62	0.47	0.26	0.1429	0.0989	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:+:[14437],KIAA1958->KIAA1958,chr9:115249127-115431677:+,HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2	HCC56_LARGE_INTESTINE	0.26	0.47	0.2418	TRUE	0	0	0	2	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	14	5	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	217	9	0.08	0.68	0.1539	0.055	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.08	0.68	0.2089	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	45	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1492	0	0.03	1	0.044	0.4946	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.03	1	0.5386	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	13	9	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	5	72	0.81	0.23	0.1429	0.0989	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0.23	0.81	0.2418	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	NIPA2--POLA1	14	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1539	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	HCC56_LARGE_INTESTINE	1	1	0.1539	TRUE	46	1352	75	139	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	NPM1P24--SET	14	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1539	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC56_LARGE_INTESTINE	1	1	0.1539	TRUE	0	0	0	434	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	13	3	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21228	2	0	0.89	0.1429	0.033	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.89	0.1759	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	13	2	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	6382	1	0	0.94	0.1429	0.022	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.94	0.1649	FALSE	41	30	6	102	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-TA--MT-TN	4	38	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0.4177	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC56_LARGE_INTESTINE	1	1	0.4617	FALSE	369	2501	205	193	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-TA--MT-TN	3	42	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0.4617	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC56_LARGE_INTESTINE	1	1	0.4947	FALSE	369	2501	205	193	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	13	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15936	2	0	0.88	0.1429	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.88	0.1539	FALSE	230	198	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	11	9	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6676	3	0	0.87	0.1209	0.0989	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.87	0.2198	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	12	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	21011	0	0	1	0.1319	0.044	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.1759	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND6--MT-TE	5	32	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.055	0.3517	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC56_LARGE_INTESTINE	0.97	1	0.4067	FALSE	499	1288	110	792	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	13	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	9627	66	0	0.25	0.0989	0.1429	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.25	0.2418	FALSE	231	215	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	20	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	55	0	0.33	1	0.0769	0.2198	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0.33	1	0.2967	FALSE	213	207	15	279	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND6--MT-TE	4	32	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.044	0.3517	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC56_LARGE_INTESTINE	0.95	1	0.3957	FALSE	499	1288	110	792	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-TA--MT-TC	10	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1099	0.0879	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC56_LARGE_INTESTINE	1	1	0.1978	FALSE	462	80	0	856	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	34	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	78	0	0.32	1	0.033	0.3737	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.32	1	0.4067	FALSE	344	826	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	34	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8546	0	0	1	0.033	0.3737	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0	1	0.4067	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	HSP90AB1--MT-RNR2	11	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3464	0	0	1	0.1209	0.011	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC56_LARGE_INTESTINE	0	1	0.1319	FALSE	13	9	0	364	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	21	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.066	0.2308	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	1	1	0.2968	FALSE	209	205	15	279	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	IKBKB--ETV6	6	20	IKBKB	18201	chr8:42180012:+	ETV6	32419	chr12:11979341:+	INCL_NON_REF_SPLICE	YES	138	33	0.16	0.44	0.066	0.2198	IKBKB->chr8:42128820-42189973:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_beta,ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+	HCC56_LARGE_INTESTINE	0.16	0.44	0.2858	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	28	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	57	0	0.36	1	0.044	0.3078	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.36	1	0.3518	FALSE	344	826	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	9	7	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	468	29311	0.03	0	0.0989	0.0769	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.03	0.1758	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	8	11	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	4804	1	0	0.95	0.0879	0.1209	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.95	0.2088	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	5	22	MT-ND5	2813	chrM:14149:+	MT-ATP8	5870	chrM:8423:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0.2418	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	1	1	0.2968	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	10	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	15603	0	0	1	0.1099	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.1209	FALSE	230	193	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	13	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	20098	0	0	1	0.0769	0.1429	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.2198	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	174	0	0.1	1	0.0769	0.1429	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.1	1	0.2198	FALSE	344	827	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	5	20	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.96	0.055	0.2198	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0.96	1	0.2748	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	9	3	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	177	9	0.06	0.57	0.0989	0.033	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.06	0.57	0.1319	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-CO3--MT-ATP6	7	11	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	1	2	0.95	0.9	0.0769	0.1209	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC56_LARGE_INTESTINE	0.9	0.95	0.1978	FALSE	189	492	56	216	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	26	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	10	1	0.74	0.033	0.2858	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC56_LARGE_INTESTINE	0.74	1	0.3188	FALSE	189	492	56	216	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	18	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	6814	0	0	1	0.055	0.1979	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.2529	FALSE	222	212	16	282	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	10	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19627	0	0	1	0.0769	0.1099	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.1868	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	7	8	MT-ATP6	1537	chrM:9063:+	MT-CO1	5319	chrM:6541:+	INCL_NON_REF_SPLICE	YES	65	28906	0.19	0	0.0769	0.0879	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.19	0.1648	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	8	3	MT-ATP6	1130	chrM:8656:+	MT-CO1	5625	chrM:6847:+	INCL_NON_REF_SPLICE	YES	317	31160	0.03	0	0.0879	0.033	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.03	0.1209	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	8	3	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	163	9	0.06	0.55	0.0879	0.033	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.06	0.55	0.1209	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	19	MT-ND4	2255	chrM:12014:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	2640	0	0.01	1	0.044	0.2088	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0.01	1	0.2528	FALSE	216	209	16	281	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18848	0	0	1	0.0879	0.033	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.1209	FALSE	231	205	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	3	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	21536	0	0	1	0.0879	0.033	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.1209	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	11	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19567	2	0	0.89	0.066	0.1209	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.89	0.1869	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	15	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3153	2	0.01	0.91	0.055	0.1649	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0.01	0.91	0.2199	FALSE	216	209	16	281	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	YWHAE--MYO1C	8	3	YWHAE	6807	chr17:1264386:-	MYO1C	35174	chr17:1369046:-	ONLY_REF_SPLICE	YES	770	169	0.01	0.06	0.0879	0.033	LOCAL_REARRANGEMENT:-:[63720],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,MYO1C->chr17:1367392-1396106:-,myosin_IC	HCC56_LARGE_INTESTINE	0.01	0.06	0.1209	TRUE	0	0	0	1	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	18	MT-ATP6	1444	chrM:8970:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	362	26532	0.06	0	0.044	0.1979	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.06	0.2419	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	5	14	MT-ATP6	1158	chrM:8684:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	468	27112	0.04	0	0.055	0.1539	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.04	0.2089	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-CO1--MT-RNR2	7	6	MT-CO1	1653	chrM:6556:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	29650	0	0	1	0.0769	0.066	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC56_LARGE_INTESTINE	0	1	0.1429	FALSE	44	51	6	21	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	14	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18473	2	0	0.9	0.055	0.1539	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.9	0.2089	FALSE	231	215	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	6	10	MT-ND5	2347	chrM:13683:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2911	3	0.01	0.84	0.066	0.1099	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0.01	0.84	0.1759	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	SLC1A5--MT-ND4L	8	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	352	0	0.03	1	0.0879	0.022	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.03	1	0.1099	FALSE	0	0	0	189	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	HSP90AB1--MT-RNR2	8	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3451	0	0	1	0.0879	0.011	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC56_LARGE_INTESTINE	0	1	0.0989	FALSE	13	9	0	364	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	21	MT-ATP6	1555	chrM:9081:+	MT-CO1	4984	chrM:6206:+	INCL_NON_REF_SPLICE	YES	29	24473	0.45	0	0.033	0.2308	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.45	0.2638	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	21	MT-ATP6	1555	chrM:9081:+	MT-CO1	4998	chrM:6220:+	INCL_NON_REF_SPLICE	YES	29	23804	0.45	0	0.033	0.2308	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.45	0.2638	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	21	MT-ND4	2324	chrM:12083:+	MT-ATP8	5419	chrM:8406:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0.2308	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	1	1	0.2638	FALSE	209	205	15	279	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	9	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	20075	238	0	0.06	0.066	0.0989	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.06	0.1649	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	17	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	22	0	0.49	1	0.044	0.1869	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.49	1	0.2309	FALSE	344	826	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	21	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.033	0.2308	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0.89	1	0.2638	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-TA--MT-TC	6	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.066	0.0989	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC56_LARGE_INTESTINE	1	1	0.1649	FALSE	462	80	0	856	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	5	12	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	360	0	0.05	1	0.055	0.1319	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0.05	1	0.1869	FALSE	182	97	9	327	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	4	16	MT-ATP6	1575	chrM:9101:+	MT-CO2	4747	chrM:7651:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.044	0.1759	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.95	1	0.2199	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	4	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	21569	0	0	1	0.0769	0.044	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.1209	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	12	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	20058	0	0	1	0.055	0.1319	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.1869	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	16	MT-ND4	1987	chrM:11746:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	19854	0	0	1	0.044	0.1759	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.2199	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	20	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0.2198	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	1	1	0.2528	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND6--MT-TE	8	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0879	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC56_LARGE_INTESTINE	1	1	0.0879	FALSE	499	1288	110	792	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-TA--MT-TN	8	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0879	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC56_LARGE_INTESTINE	1	1	0.0879	FALSE	369	2501	205	193	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-TA--MT-TN	8	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0879	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC56_LARGE_INTESTINE	1	1	0.0879	FALSE	369	2501	205	193	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MTATP8P1--MT-ND1	8	0	MTATP8P1	1065	chr1:568979:+	MT-ND1	4420	chrM:3519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0879	0	MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC56_LARGE_INTESTINE	1	1	0.0879	FALSE	1	2	0	2	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	REV3L--RPL28	8	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0879	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	HCC56_LARGE_INTESTINE	1	1	0.0879	TRUE	22	156	2	142	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	7	3	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	314	26369	0.03	0	0.0769	0.033	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.03	0.1099	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	15	MT-ND4	2288	chrM:12047:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	YES	21	37	0.47	0.34	0.044	0.1649	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0.34	0.47	0.2089	FALSE	213	207	15	279	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	7	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0769	0.033	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC56_LARGE_INTESTINE	0.91	1	0.1099	FALSE	81	155	12	160	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	18	MT-ATP6	1527	chrM:9053:+	MT-CO1	5223	chrM:6445:+	INCL_NON_REF_SPLICE	YES	99	27148	0.17	0	0.033	0.1979	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.17	0.2309	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	14	MT-ND4	2176	chrM:11935:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9731	2	0	0.9	0.044	0.1539	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.9	0.1979	FALSE	231	215	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	6	6	MT-ND5	1959	chrM:13295:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5651	0	0	1	0.066	0.066	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.132	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	C15orf57--CBX3	6	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	70	16	0.14	0.41	0.066	0.055	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC56_LARGE_INTESTINE	0.14	0.41	0.121	TRUE	267	562	48	632	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	17	MT-ATP6	1181	chrM:8707:+	MT-CO1	4974	chrM:6196:+	INCL_NON_REF_SPLICE	YES	485	23323	0.04	0	0.033	0.1869	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.04	0.2199	FALSE	183	103	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	4	13	MT-ATP6	1223	chrM:8749:+	MT-CO2	4767	chrM:7671:+	INCL_NON_REF_SPLICE	YES	188	0	0.08	1	0.044	0.1429	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.08	1	0.1869	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	1	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	NO	9932	66	0	0.11	0.0769	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.11	0.0879	FALSE	230	193	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	17	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	19607	0	0	1	0.033	0.1869	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.2199	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	4	13	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	2949	0	0.01	1	0.044	0.1429	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0.01	1	0.1869	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	6	4	MT-ATP6	1110	chrM:8636:+	MT-CO1	4969	chrM:6191:+	INCL_NON_REF_SPLICE	YES	314	22842	0.03	0	0.066	0.044	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.03	0.11	FALSE	183	103	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	7	0	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0769	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	1	1	0.0769	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND1--OLFM4	7	0	MT-ND1	1274	chrM:3580:+	OLFM4	11329	chr13:53625686:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0769	0	MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,OLFM4->Oncogene{Bushman},chr13:53602894-53626192:+,olfactomedin_4	HCC56_LARGE_INTESTINE	1	1	0.0769	FALSE	0	0	0	1	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	16	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	20840	0	0	1	0.033	0.1759	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.2089	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	8	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	20063	107	0	0.11	0.055	0.0879	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.11	0.1429	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	16	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0.1759	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	1	1	0.2089	FALSE	209	205	15	279	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND6--MT-TE	3	16	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.033	0.1759	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC56_LARGE_INTESTINE	0.9	1	0.2089	FALSE	499	1288	110	792	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	RP11-680G10.1--GSE1	7	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0769	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC56_LARGE_INTESTINE	1	1	0.0769	TRUE	465	1949	224	605	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	15	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6252	2	0	0.9	0.033	0.1649	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.9	0.1979	FALSE	218	210	16	281	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	5	6	MT-ATP6	1555	chrM:9081:+	MT-CO2	4955	chrM:7859:+	INCL_NON_REF_SPLICE	YES	16	23	0.41	0.32	0.055	0.066	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.32	0.41	0.121	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	10	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	19674	0	0	1	0.044	0.1099	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.1539	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	14	MT-ND4	1833	chrM:11592:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	19464	0	0	1	0.033	0.1539	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.1869	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	14	MT-ND4	1998	chrM:11757:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19708	0	0	1	0.033	0.1539	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.1869	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	4	10	MT-ND5	2303	chrM:13639:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2928	3	0	0.82	0.044	0.1099	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.82	0.1539	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	14	MT-ND5	2518	chrM:13854:+	MT-ATP8	5892	chrM:8445:+	INCL_NON_REF_SPLICE	YES	3579	1	0	0.94	0.033	0.1539	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.94	0.1869	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	6	2	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6537	3	0	0.73	0.066	0.022	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.73	0.088	FALSE	41	30	6	102	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	13	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	455	27196	0.03	0	0.033	0.1429	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.03	0.1759	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	9	MT-ATP6	1150	chrM:8676:+	MT-CO1	5195	chrM:6417:+	INCL_NON_REF_SPLICE	YES	380	26219	0.03	0	0.044	0.0989	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.03	0.1429	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	4	9	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	251	9	0.05	0.59	0.044	0.0989	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.05	0.59	0.1429	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	13	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	19925	0	0	1	0.033	0.1429	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.1759	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	13	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	20004	0	0	1	0.033	0.1429	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.1759	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	16709	0	0	1	0.066	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.077	FALSE	231	204	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	13	MT-ND5	2247	chrM:13583:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	4169	1	0	0.94	0.033	0.1429	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.94	0.1759	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	13	MT-ND5	2200	chrM:13536:+	MT-ATP8	5894	chrM:8447:+	INCL_NON_REF_SPLICE	YES	4732	1	0	0.94	0.033	0.1429	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.94	0.1759	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	4	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	20682	0	0	1	0.055	0.044	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.099	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	12	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	58	0	0.21	1	0.033	0.1319	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.21	1	0.1649	FALSE	344	826	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	4	8	MT-ND5	2099	chrM:13435:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6502	3	0	0.8	0.044	0.0879	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.8	0.1319	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	7	MT-ATP6	1408	chrM:8934:+	MT-CO1	5334	chrM:6556:+	INCL_NON_REF_SPLICE	YES	405	29666	0.03	0	0.044	0.0769	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.03	0.1209	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	5	3	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	177	10	0.04	0.44	0.055	0.033	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.04	0.44	0.088	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	7	MT-ND4	1531	chrM:11290:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	23571	0	0	1	0.044	0.0769	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.1209	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0.033	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	1	1	0.088	FALSE	344	821	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	11	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11	1	0.56	0.93	0.033	0.1209	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0.56	0.93	0.1539	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	6	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	309	27085	0.03	0	0.044	0.066	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.03	0.11	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	10	MT-ATP6	1585	chrM:9111:+	MT-CO2	4833	chrM:7737:+	INCL_NON_REF_SPLICE	YES	0	10	1	0.57	0.033	0.1099	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.57	1	0.1429	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	5	1	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	475	18896	0.01	0	0.055	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.01	0.066	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	5	MT-ATP6	1121	chrM:8647:+	MT-CO1	4698	chrM:5920:+	INCL_NON_REF_SPLICE	YES	310	0	0.03	1	0.044	0.055	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0.03	1	0.099	FALSE	182	97	9	327	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	9	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	256	10	0.04	0.55	0.033	0.0989	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.04	0.55	0.1319	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	1	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	9369	0	0	1	0.055	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.066	FALSE	230	193	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	16709	58	0	0.09	0.055	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.09	0.066	FALSE	231	204	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	1	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	12173	0	0	1	0.055	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.066	FALSE	230	193	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	9	MT-ND5	2150	chrM:13486:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	NO	5948	3	0	0.8	0.033	0.0989	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.8	0.1319	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	4	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	YES	307	26667	0.03	0	0.044	0.044	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.03	0.088	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	4	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	20682	0	0	1	0.044	0.044	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.088	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	8	MT-ND4	1523	chrM:11282:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	23193	0	0	1	0.033	0.0879	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.1209	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	1	1	0.055	FALSE	344	821	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND6--MT-TE	5	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC56_LARGE_INTESTINE	1	1	0.055	FALSE	499	1288	110	792	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC56_LARGE_INTESTINE	1	1	0.055	FALSE	462	80	0	856	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	7	MT-ATP6	1265	chrM:8791:+	MT-CO1	5363	chrM:6585:+	INCL_NON_REF_SPLICE	NO	525	30227	0.02	0	0.033	0.0769	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.02	0.1099	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	4	3	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	182	13	0.04	0.35	0.044	0.033	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.04	0.35	0.077	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	7	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	19567	391	0	0.02	0.033	0.0769	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.02	0.1099	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	3	MT-ND4	1278	chrM:11037:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	18714	0	0	1	0.044	0.033	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.077	FALSE	231	205	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	7	MT-ND5	2641	chrM:13977:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	2429	122	0	0.08	0.033	0.0769	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.08	0.1099	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	6	MT-ATP6	1400	chrM:8926:+	MT-CO1	5381	chrM:6603:+	INCL_NON_REF_SPLICE	YES	428	29511	0.02	0	0.033	0.066	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.02	0.099	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.033	0.066	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC56_LARGE_INTESTINE	0.9	1	0.099	FALSE	189	492	56	216	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	6	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22473	2	0	0.82	0.033	0.066	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.82	0.099	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	4	2	MT-ND5	1627	chrM:12963:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	5003	122	0	0.05	0.044	0.022	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.05	0.066	FALSE	42	36	7	104	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	1	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	8842	0	0	1	0.044	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.055	FALSE	230	193	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	1	MT-ND4	1256	chrM:11015:+	MT-ATP8	5530	chrM:8517:+	INCL_NON_REF_SPLICE	YES	17326	402	0	0.01	0.044	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.01	0.055	FALSE	231	204	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	1	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	18689	380	0	0.01	0.044	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.01	0.055	FALSE	231	205	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	15747	0	0	1	0.044	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.055	FALSE	230	193	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	4	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.044	0.011	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC56_LARGE_INTESTINE	0.83	1	0.055	FALSE	81	155	12	160	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	SERINC5--MICAL2	3	5	SERINC5	1184	chr5:79551715:-	MICAL2	38230	chr11:12225797:+	ONLY_REF_SPLICE	YES	200	132	0.04	0.06	0.033	0.055	SERINC5->chr5:79407050-79551898:-,serine_incorporator_5,MICAL2->chr11:12115543-12285334:+,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_2	HCC56_LARGE_INTESTINE	0.04	0.06	0.088	TRUE	0	0	0	1	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	4	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	315	29540	0.02	0	0.033	0.044	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.02	0.077	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	4	MT-ATP6	1128	chrM:8654:+	MT-CO1	5332	chrM:6554:+	INCL_NON_REF_SPLICE	YES	315	29791	0.02	0	0.033	0.044	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.02	0.077	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	4	MT-ATP6	1113	chrM:8639:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	306	26431	0.02	0	0.033	0.044	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.02	0.077	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	4	MT-ATP6	1573	chrM:9099:+	MT-CO2	5030	chrM:7934:+	INCL_NON_REF_SPLICE	YES	1	17	0.88	0.29	0.033	0.044	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.29	0.88	0.077	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC56_LARGE_INTESTINE	1	1	0.044	FALSE	189	492	56	216	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC56_LARGE_INTESTINE	1	1	0.044	FALSE	189	492	56	216	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	0	MT-ND4	1017	chrM:10776:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	1	1	0.044	FALSE	230	190	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	1	1	0.044	FALSE	344	821	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-TA--MT-TN	4	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC56_LARGE_INTESTINE	1	1	0.044	FALSE	369	2501	205	193	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-TA--MT-TN	4	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC56_LARGE_INTESTINE	1	1	0.044	FALSE	369	2501	205	193	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MTND4P12--MTATP6P1	4	0	MTND4P12	1756	chr5:134262971:-	MTATP6P1	5665	chr1:569363:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HCC56_LARGE_INTESTINE	1	1	0.044	TRUE	27	31	5	8	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1452	chrM:11211:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	21387	0	0	1	0.033	0.033	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.066	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1285	chrM:11044:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	19096	0	0	1	0.033	0.033	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.066	FALSE	231	205	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1477	chrM:11236:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	20842	0	0	1	0.033	0.033	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.066	FALSE	231	217	16	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	3	MT-ND4	1311	chrM:11070:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	21331	0	0	1	0.033	0.033	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.066	FALSE	231	205	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	3	MT-ND5	1590	chrM:12926:+	MT-ATP8	5921	chrM:8474:+	INCL_NON_REF_SPLICE	YES	4741	3	0	0.67	0.033	0.033	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.67	0.066	FALSE	42	36	7	104	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MADD--WAPAL	1	10	MADD	24590	chr11:47333393:+	WAPAL	55716	chr10:88197772:-	ONLY_REF_SPLICE	YES	78	83	0.12	0.12	0.011	0.1099	MADD->MAP_kinase_activating_death_domain,chr11:47290712-47351582:+,WAPAL->chr10:88195013-88281572:-	HCC56_LARGE_INTESTINE	0.12	0.12	0.1209	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1063	chrM:8589:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	170	26649	0.03	0	0.033	0.022	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.03	0.055	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1112	chrM:8638:+	MT-CO1	5325	chrM:6547:+	INCL_NON_REF_SPLICE	YES	306	29450	0.02	0	0.033	0.022	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.02	0.055	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1098	chrM:8624:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	272	29832	0.02	0	0.033	0.022	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.02	0.055	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1598	chrM:9124:+	MT-CO1	5978	chrM:7200:+	INCL_NON_REF_SPLICE	YES	1	16452	0.83	0	0.033	0.022	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.83	0.055	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	2	MT-ATP6	1157	chrM:8683:+	MT-CO2	4969	chrM:7873:+	INCL_NON_REF_SPLICE	YES	250	21	0.02	0.19	0.033	0.022	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.02	0.19	0.055	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	2	MT-ND5	1807	chrM:13143:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	NO	4279	109	0	0.04	0.033	0.022	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	0.04	0.055	FALSE	43	37	8	105	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	SLC1A5--MT-ND4L	3	2	SLC1A5	6484	chr19:47282014:-	MT-ND4L	12879	chrM:10486:+	INCL_NON_REF_SPLICE	YES	351	0	0.01	1	0.033	0.022	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	0.01	1	0.055	FALSE	0	0	0	189	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1082	chrM:8608:+	MT-CO1	5379	chrM:6601:+	INCL_NON_REF_SPLICE	YES	187	29580	0.02	0	0.033	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.02	0.044	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1380	chrM:8906:+	MT-CO1	5953	chrM:7175:+	INCL_NON_REF_SPLICE	YES	426	19609	0.01	0	0.033	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC56_LARGE_INTESTINE	0	0.01	0.044	FALSE	183	104	9	328	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	1	MT-ATP6	1142	chrM:8668:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	208	20	0.02	0.17	0.033	0.011	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.02	0.17	0.044	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	1	MT-ATP6	1118	chrM:8644:+	MT-CO2	4967	chrM:7871:+	INCL_NON_REF_SPLICE	YES	174	21	0.02	0.16	0.033	0.011	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.02	0.16	0.044	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	1	MT-ATP6	1169	chrM:8695:+	MT-CO2	4981	chrM:7885:+	INCL_NON_REF_SPLICE	YES	117	18	0.03	0.18	0.033	0.011	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	0.03	0.18	0.044	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-CO1--MT-RNR2	3	1	MT-CO1	1951	chrM:6854:+	MT-RNR2	6162	chrM:2290:+	INCL_NON_REF_SPLICE	YES	30180	5239	0	0	0.033	0.011	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC56_LARGE_INTESTINE	0	0	0.044	FALSE	44	51	6	21	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1114	chrM:10873:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9928	0	0	1	0.033	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.044	FALSE	230	193	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	16623	0	0	1	0.033	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.044	FALSE	231	204	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1262	chrM:11021:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	18152	0	0	1	0.033	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	0	1	0.044	FALSE	231	205	14	283	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND6--MT-TE	3	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0.011	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC56_LARGE_INTESTINE	1	1	0.044	FALSE	499	1288	110	792	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	AC073283.4--EPCAM	3	0	AC073283.4	1174	chr2:47572040:-	EPCAM	19843	chr2:47604153:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	LOCAL_INVERSION:-:+:[84],AC073283.4->chr2:47419544-47572213:-,EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule	HCC56_LARGE_INTESTINE	1	1	0.033	TRUE	0	1	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	C6orf132--GUCA1B	3	0	C6orf132	1320	chr6:42110038:-	GUCA1B	16740	chr6:42156469:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	LOCAL_REARRANGEMENT:-:[41782],C6orf132->chr6:42068856-42110357:-,chromosome_6_open_reading_frame_132,GUCA1B->chr6:42152139-42162654:-,guanylate_cyclase_activator_1B	HCC56_LARGE_INTESTINE	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	MDH2--RPS28	3	0	MDH2	1113	chr7:75677481:+	RPS28	14621	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	MDH2->chr7:75677369-75696826:+,malate_dehydrogenase_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC56_LARGE_INTESTINE	1	1	0.033	TRUE	0	0	0	2	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ATP6--MT-CO2	3	0	MT-ATP6	1118	chrM:8644:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	1	1	0.033	FALSE	59	21	0	114	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC56_LARGE_INTESTINE	1	1	0.033	FALSE	344	821	44	306	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-ATP8	3	0	MT-ND5	1030	chrM:12366:+	MT-ATP8	5926	chrM:8479:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC56_LARGE_INTESTINE	1	1	0.033	FALSE	34	25	3	77	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND5--MT-CO2	3	0	MT-ND5	1149	chrM:12485:+	MT-CO2	5950	chrM:7723:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	LOCAL_REARRANGEMENT:+:[4068],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC56_LARGE_INTESTINE	1	1	0.033	FALSE	6	0	0	4	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1025	chrM:14649:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC56_LARGE_INTESTINE	1	1	0.033	FALSE	499	1288	110	792	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC56_LARGE_INTESTINE	1	1	0.033	FALSE	499	1288	110	792	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MTATP8P1--MT-ND1	3	0	MTATP8P1	1259	chr1:569173:+	MT-ND1	4223	chrM:3322:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC56_LARGE_INTESTINE	1	1	0.033	FALSE	1	2	0	2	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MTND4P12--MTATP6P1	3	0	MTND4P12	1990	chr5:134262737:-	MTATP6P1	5667	chr1:569365:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HCC56_LARGE_INTESTINE	1	1	0.033	TRUE	27	31	5	8	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC56_LARGE_INTESTINE	1	1	0.033	TRUE	0	0	0	434	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	AC019221.4--SAG	2	2	AC019221.4	3293	chr2:234299129:+	SAG	8880	chr2:234217808:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.022	0.022	LOCAL_REARRANGEMENT:+:[7519],AC019221.4->chr2:234263220-234301045:+,SAG->Oncogene{Bushman},S-antigen;_retina_and_pineal_gland_(arrestin),chr2:234216462-234255701:+	HCC56_LARGE_INTESTINE	0.8	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	CMTM8--CMTM7	2	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	45	58	0.06	0.05	0.022	0.011	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	HCC56_LARGE_INTESTINE	0.05	0.06	0.033	FALSE	118	557	29	88	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0.011	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC56_LARGE_INTESTINE	1	1	0.033	FALSE	93	270	15	244	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	RP11-1379J22.5--SHMT1	2	0	RP11-1379J22.5	1720	chr5:179085482:+	SHMT1	17903	chr17:18236602:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RP11-1379J22.5->chr5:179084763-179091433:+,SHMT1->chr17:18231187-18266856:-,serine_hydroxymethyltransferase_1	HCC56_LARGE_INTESTINE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	AKAP13--PDE8A	1	3	AKAP13	1228	chr15:85924029:+	PDE8A	77340	chr15:85641179:+	ONLY_REF_SPLICE	YES	6	55	0.4	0.07	0.011	0.033	{Klijn_CCL:Breast=1},AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	HCC56_LARGE_INTESTINE	0.07	0.4	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	AKAP13--PDE8A	1	1	AKAP13	1228	chr15:85924029:+	PDE8A	81009	chr15:85656608:+	ONLY_REF_SPLICE	YES	6	66	0.25	0.03	0.011	0.011	{Klijn_CCL:Breast=1},AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	HCC56_LARGE_INTESTINE	0.03	0.25	0.022	TRUE	0	0	0	1	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	CHCHD3--EXOC4	1	1	CHCHD3	10629	chr7:132570422:-	EXOC4	32133	chr7:133160082:+	ONLY_REF_SPLICE	YES	247	69	0.01	0.03	0.011	0.011	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	HCC56_LARGE_INTESTINE	0.01	0.03	0.022	FALSE	0	1	0	2	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	CPSF6--CERS6	1	1	CPSF6	11046	chr12:69656342:+	CERS6	21651	chr2:169404106:+	ONLY_REF_SPLICE	YES	138	200	0.01	0.01	0.011	0.011	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CERS6->ceramide_synthase_6,chr2:169312372-169631644:+	HCC56_LARGE_INTESTINE	0.01	0.01	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	DAGLB--RAC1	1	1	DAGLB	13204	chr7:6461358:-	RAC1	28740	chr7:6439757:+	ONLY_REF_SPLICE	NO	26	312	0.07	0.01	0.011	0.011	LOCAL_INVERSION:-:+:[5149],DAGLB->chr7:6448757-6523821:-,diacylglycerol_lipase_beta,RAC1->ArcherDX_panel,FoundationOne_panel,chr7:6414154-6443608:+,ras-related_C3_botulinum_toxin_substrate_1_(rho_family,_small_GTP_binding_protein_Rac1)	HCC56_LARGE_INTESTINE	0.01	0.07	0.022	FALSE	0	0	0	2	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MB21D2--FGF12	1	1	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.011	0.011	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	HCC56_LARGE_INTESTINE	0.2	1	0.022	FALSE	0	17	0	46	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	METAP1--TSPAN5	1	1	METAP1	1248	chr4:99917018:+	TSPAN5	27602	chr4:99428879:-	ONLY_REF_SPLICE	NO	94	23	0.02	0.08	0.011	0.011	METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1,TSPAN5->chr4:99391518-99579780:-,tetraspanin_5	HCC56_LARGE_INTESTINE	0.02	0.08	0.022	TRUE	0	0	0	2	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	MYH9--EIF3D	1	1	MYH9	1212	chr22:36783852:-	EIF3D	57541	chr22:36907833:-	ONLY_REF_SPLICE	YES	402	319	0	0.01	0.011	0.011	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D	HCC56_LARGE_INTESTINE	0	0.01	0.022	FALSE	0	1	0	1	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	RNF213--SLC26A11	1	1	RNF213	18646	chr17:78291077:+	SLC26A11	86042	chr17:78199636:+	ONLY_REF_SPLICE	NO	29	3	0.06	0.4	0.011	0.011	LOCAL_REARRANGEMENT:+:[7366],RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213,SLC26A11->Oncogene{Bushman},chr17:78193498-78227299:+,solute_carrier_family_26_member_11	HCC56_LARGE_INTESTINE	0.06	0.4	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000467
HCC56_LARGE_INTESTINE	RPS29--DNAAF2	1	1	RPS29	2718	chr14:50052668:-	DNAAF2	12601	chr14:50094873:-	ONLY_REF_SPLICE	YES	304	59	0.01	0.03	0.011	0.011	LOCAL_REARRANGEMENT:-:[26484],RPS29->chr14:50043390-50065408:-,ribosomal_protein_S29,DNAAF2->chr14:50091892-50101948:-,dynein_(axonemal)_assembly_factor_2	HCC56_LARGE_INTESTINE	0.01	0.03	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000467
HCC56_LARGE_INTESTINE	YWHAE--CRK	1	1	YWHAE	6807	chr17:1264386:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	770	81	0	0.02	0.011	0.011	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	HCC56_LARGE_INTESTINE	0	0.02	0.022	FALSE	0	1	0	2	0	FALSE	ACH-000467
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	198	50	KMT2A	16644	chr11:118353210:+	AFF1	62543	chr4:88005272:+	ONLY_REF_SPLICE	YES	55	110	0.82	0.69	1.6574	0.4185	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.82	2.0759	TRUE	0	0	0	2	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	119	36	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9961	0.3013	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2974	TRUE	508	994	45	981	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	69	16	MT-ND4	1170	chrM:10929:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6	0	0.93	1	0.5776	0.1339	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.7115	FALSE	344	826	44	306	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	64	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5357	0.067	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6027	FALSE	416	2512	207	587	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	62	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.519	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.519	TRUE	0	0	0	518	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	60	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	190	2	0.25	0.97	0.5022	0.0251	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.97	0.5273	TRUE	519	3926	326	965	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	25	48	KMT2A	16644	chr11:118353210:+	AFF1	62546	chr4:88005275:+	ONLY_REF_SPLICE	YES	55	105	0.57	0.41	0.2093	0.4018	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.57	0.6111	TRUE	0	0	0	2	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	34	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2846	0.0251	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3097	FALSE	499	1288	110	792	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELOVL5--PABPC1	34	1	ELOVL5	11210	chr6:53139923:-	PABPC1	22190	chr8:101730116:-	ONLY_REF_SPLICE	YES	1411	1664	0.02	0.02	0.2846	0.0084	ELOVL5->ELOVL_fatty_acid_elongase_5,Oncogene{Bushman},chr6:53132196-53213947:-,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.293	TRUE	0	0	0	1	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	108	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	9	0	0.93	1	0.0335	0.904	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.9375	FALSE	344	826	44	306	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	22	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1842	0.0419	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2261	FALSE	462	80	0	856	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	70	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	2	0.96	0.97	0.0251	0.5859	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.97	0.611	FALSE	344	821	44	306	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	18	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1507	0.067	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2177	FALSE	499	1288	110	792	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNB2L1--PROM1	19	1	GNB2L1	7690	chr5:180666493:-	PROM1	24289	chr4:16039647:-	INCL_NON_REF_SPLICE	NO	4942	719	0	0.03	0.159	0.0084	GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-,PROM1->chr4:15964699-16086001:-,prominin_1	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.1674	FALSE	0	0	0	1	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	26	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	7	0	0.82	1	0.0586	0.2176	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.2762	FALSE	344	826	44	306	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	13	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1088	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1088	TRUE	46	1352	75	139	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	11	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0837	0.0921	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1758	FALSE	499	1288	110	792	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	11	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0921	0.0419	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.134	FALSE	462	80	0	856	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4L--MT-RNR2	12	0	MT-ND4L	1159	chrM:10628:+	MT-RNR2	4852	chrM:2225:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1004	0	LOCAL_REARRANGEMENT:+:[7241],MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1004	FALSE	17	32	5	7	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	11	4	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	97	0	0.13	1	0.0921	0.0335	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.1256	TRUE	61	154	6	19	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--AFF1	5	26	KMT2A	16241	chr11:118352807:+	AFF1	62543	chr4:88005272:+	ONLY_REF_SPLICE	YES	39	110	0.44	0.22	0.0419	0.2176	Cosmic{samples=1176,mutations=256,papers=55},Mitelman{AL_bi=2,Skin=2,ALL=7,AML=8},KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.44	0.2595	TRUE	0	0	0	2	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	9	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	58	12	0.18	0.52	0.0753	0.0335	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.52	0.1088	TRUE	267	562	48	632	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-673C5.1--NPM1P40	10	0	RP11-673C5.1	1643	chr15:71457112:-	NPM1P40	5110	chr1:203225334:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0837	0	RP11-673C5.1->chr15:71457109-71457754:-,NPM1P40->chr1:203224871-203225603:+,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_40	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0837	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	26	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	239	0	0.11	1	0.0251	0.2176	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.2427	FALSE	344	827	44	306	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	9	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.67	1	0.0753	0.0084	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0837	FALSE	292	1546	117	613	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	14	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	8	0	0.7	1	0.0419	0.1172	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	1	0.1591	FALSE	344	826	44	306	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-673C5.1--NPM1P40	8	0	RP11-673C5.1	1646	chr15:71457109:-	NPM1P40	5104	chr1:203225328:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	RP11-673C5.1->chr15:71457109-71457754:-,NPM1P40->chr1:203224871-203225603:+,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_40	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.067	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	8	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.067	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.067	TRUE	0	0	0	518	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	7	2	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	31	6	0.23	0.6	0.0586	0.0167	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.6	0.0753	TRUE	0	2	0	11	2	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	10	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0.0837	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1172	FALSE	499	1288	110	792	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	6	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0502	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0502	TRUE	0	0	0	100	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	56	13	0.12	0.38	0.0419	0.0251	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.38	0.067	TRUE	267	562	48	632	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0.0251	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.067	FALSE	499	1288	110	792	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0251	0.0837	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1088	FALSE	499	1288	110	792	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0419	FALSE	462	80	0	856	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	3	8	RP11-123O10.4	2167	chr12:67285681:-	GRIP1	11081	chr12:66990707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0.067	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0921	FALSE	0	5	0	12	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	4	3	CCDC26	2447	chr8:130587128:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	31	0	0.18	1	0.0335	0.0251	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.0586	TRUE	0	3	0	7	3	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	3	1	0.67	0.0335	0.0167	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0502	FALSE	515	4851	409	746	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC002454.1--GATAD1	4	1	AC002454.1	2126	chr7:92484267:+	GATAD1	8651	chr7:92078066:+	ONLY_REF_SPLICE	YES	546	9	0.01	0.36	0.0335	0.0084	AC002454.1->chr7:92465797-92546501:+,GATAD1->GATA_zinc_finger_domain_containing_1,chr7:92076767-92088150:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.36	0.0419	FALSE	0	0	0	1	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	4	1	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	3	23	0.62	0.18	0.0335	0.0084	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.62	0.0419	FALSE	1	11	0	34	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	5	MT-TA	1051	chrM:5605:-	MT-TC	4078	chrM:5818:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0.0419	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.067	FALSE	462	80	0	856	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	4	CCDC26	6922	chr8:130365050:-	LINC00977	13259	chr8:130229652:-	INCL_NON_REF_SPLICE	YES	35	6	0.17	0.54	0.0251	0.0335	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.54	0.0586	TRUE	0	0	0	6	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-673C5.1--NPM1P40	4	0	RP11-673C5.1	1616	chr15:71457139:-	NPM1P40	5107	chr1:203225331:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	RP11-673C5.1->chr15:71457109-71457754:-,NPM1P40->chr1:203224871-203225603:+,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_40	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GNB2L1--PROM1	3	1	GNB2L1	4897	chr5:180669286:-	PROM1	13438	chr4:16085838:-	INCL_NON_REF_SPLICE	NO	4298	40	0	0.09	0.0251	0.0084	GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-,PROM1->chr4:15964699-16086001:-,prominin_1	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0335	FALSE	0	0	0	1	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	7	0.57	0.36	0.0251	0.0084	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.57	0.0335	FALSE	16	356	14	466	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	FALSE	344	821	44	306	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	206	0	0.03	1	0.0167	0.0335	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0502	FALSE	164	806	69	479	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPM1G--HMGB1P5	3	0	PPM1G	4872	chr2:27607539:-	HMGB1P5	11855	chr3:22423814:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	PPM1G->chr2:27604061-27632554:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1G,HMGB1P5->chr3:22423310-22424420:+,high_mobility_group_box_1_pseudogene_5	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	2	4	RP11-353N4.6	4795	chr1:149580997:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	99	0	0.06	1	0.0167	0.0335	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0502	TRUE	2	2	0	2	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	3	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	477	1352	189	275	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STK24--ZNF549	3	0	STK24	10171	chr13:99127075:-	ZNF549	26911	chr19:58046512:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24,ZNF549->chr19:58038693-58068910:+,zinc_finger_protein_549	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	3	0	ZNF654	1705	chr3:88188958:+	HMGB2	12540	chr4:174253299:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0251	TRUE	0	0	0	518	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	6	CCDC26	4666	chr8:130411760:-	LINC00977	12110	chr8:130235615:-	ONLY_REF_SPLICE	YES	27	0	0.21	1	0.0084	0.0502	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.0586	TRUE	0	0	0	4	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	1	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0084	0.0419	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0503	FALSE	93	270	15	244	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC002454.1--GATAD1	2	0	AC002454.1	1081	chr7:92465877:+	GATAD1	8651	chr7:92078066:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	AC002454.1->chr7:92465797-92546501:+,GATAD1->GATA_zinc_finger_domain_containing_1,chr7:92076767-92088150:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATR--U2SURP	2	0	ATR	3414	chr3:142284963:-	U2SURP	75627	chr3:142751626:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Vagina=1},ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	10	0	10	7	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	4	CCDC26	4666	chr8:130411760:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	27	6	0.16	0.45	0.0084	0.0335	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.45	0.0419	TRUE	0	0	0	4	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCNB1IP1--LY6E	2	0	CCNB1IP1	6232	chr14:20793698:-	LY6E	21514	chr8:144102731:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1,LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNTT--GTF3C1	2	0	DNTT	1373	chr10:98064457:+	GTF3C1	39539	chr16:27494446:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	DNTT->DNA_nucleotidylexotransferase,chr10:98064085-98098321:+,GTF3C1->chr16:27470876-27561234:-,general_transcription_factor_IIIC_subunit_1	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	2	0	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	3	48	0	26	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXO1--LINC00598	2	0	FOXO1	2015	chr13:41239720:-	LINC00598	16798	chr13:41034543:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	NEIGHBORS[74661],FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,LINC00598->chr13:41025131-41055143:-,long_intergenic_non-protein_coding_RNA_598	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	FALSE	8	15	1	11	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIFC2--C11orf95	2	0	KIFC2	3364	chr8:145693789:+	C11orf95	15490	chr11:63531341:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	KIFC2->chr8:145691426-145699585:+,kinesin_family_member_C2,C11orf95->chr11:63527364-63536113:-,chromosome_11_open_reading_frame_95	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MARCH6--SET	2	0	MARCH6	1215	chr5:10354029:+	SET	44236	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	N4BP2--GABPB2	2	0	N4BP2	2302	chr4:40075171:+	GABPB2	34108	chr1:151060666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	N4BP2->NEDD4_binding_protein_2,chr4:40058446-40159872:+,GABPB2->GA_binding_protein_transcription_factor_beta_subunit_2,chr1:151043054-151098018:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--WDSUB1	2	0	NCL	10896	chr2:232321342:-	WDSUB1	26673	chr2:160105023:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	NCL->chr2:232318242-232348352:-,nucleolin,WDSUB1->WD_repeat,_sterile_alpha_motif_and_U-box_domain_containing_1,chr2:160092304-160143310:-	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	117	0	0.04	1	0.0084	0.0335	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0419	FALSE	125	705	46	456	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLE--ANKLE2	2	0	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	11	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	1	4	RP11-353N4.6	7562	chr1:149591237:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	88	0	0.05	1	0.0084	0.0335	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0419	TRUE	2	9	0	4	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--SFPQ	2	0	RUNX1	21108	chr21:36421139:-	SFPQ	57932	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SDF4--SSU72	2	0	SDF4	5392	chr1:1158624:-	SSU72	15229	chr1:1500296:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	1	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF3B3--TXNL4B	2	0	SF3B3	12560	chr16:70578436:+	TXNL4B	40889	chr16:72120701:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3,TXNL4B->chr16:72078188-72128330:-,thioredoxin_like_4B	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SP4--ZNF138	2	0	SP4	3810	chr7:21470461:+	ZNF138	18331	chr7:64291829:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	HGNC_GENEFAM,PROTCLUST,SP4->Sp4_transcription_factor,chr7:21467652-21554440:+,ZNF138->chr7:64254766-64294054:+,zinc_finger_protein_138	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAP1--CTNNBL1	2	0	UBAP1	1236	chr9:34179238:+	CTNNBL1	29766	chr20:36405747:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,CTNNBL1->catenin_beta_like_1,chr20:36322408-36500531:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZRANB3--HDHD2	2	0	ZRANB3	2907	chr2:136261899:-	HDHD2	45957	chr18:44641719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	ZRANB3->chr2:135894486-136288806:-,zinc_finger_RANBP2-type_containing_3,HDHD2->chr18:44633774-44676891:-,haloacid_dehalogenase_like_hydrolase_domain_containing_2	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAX5--ZCCHC7	1	2	PAX5	9042	chr9:36923352:-	ZCCHC7	31679	chr9:37302185:+	ONLY_REF_SPLICE	NO	425	270	0.01	0.01	0.0084	0.0167	LOCAL_INVERSION:-:+:[86433],PAX5->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:36833272-37034103:-,paired_box_5,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0251	FALSE	0	0	0	1	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	3	1	0.5	0.0084	0.0167	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0251	FALSE	467	2173	244	435	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GATS--PILRB	1	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	NO	22	126	0.08	0.02	0.0084	0.0084	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.08	0.0168	TRUE	57	41	2	35	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPD--HMGN4	1	1	HNRNPD	8778	chr4:83276457:-	HMGN4	16731	chr6:26545355:+	ONLY_REF_SPLICE	YES	1284	35	0	0.05	0.0084	0.0084	HNRNPD->Oncogene{Bushman},chr4:83273651-83295656:-,heterogeneous_nuclear_ribonucleoprotein_D,HMGN4->chr6:26538633-26546482:+,high_mobility_group_nucleosomal_binding_domain_4	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0168	FALSE	0	0	0	1	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--IL7R	1	1	MLLT10	8211	chr10:21860955:+	IL7R	39035	chr5:35857079:+	ONLY_REF_SPLICE	NO	47	17	0.04	0.11	0.0084	0.0084	MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,IL7R->ArcherDX_panel,FoundationOne_panel,chr5:35852797-35879705:+,interleukin_7_receptor	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.11	0.0168	TRUE	0	0	0	1	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--L3MBTL4	1	1	NRIP1	3459	chr21:16386665:-	L3MBTL4	23149	chr18:6312055:-	ONLY_REF_SPLICE	YES	206	24	0.01	0.08	0.0084	0.0084	NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,L3MBTL4->chr18:5954705-6415236:-,l(3)mbt-like_4_(Drosophila)	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.08	0.0168	FALSE	0	0	0	1	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLE2--NEMF	1	1	POLE2	3464	chr14:50146443:-	NEMF	47212	chr14:50262662:-	ONLY_REF_SPLICE	NO	47	48	0.04	0.04	0.0084	0.0084	LOCAL_REARRANGEMENT:-:[94857],POLE2->chr14:50110273-50155140:-,polymerase_(DNA)_epsilon_2,_accessory_subunit,NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.04	0.0168	TRUE	0	0	0	3	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	R3HDM1--RAB3GAP1	1	1	R3HDM1	26958	chr2:136437894:+	RAB3GAP1	45038	chr2:135870721:+	ONLY_REF_SPLICE	NO	127	70	0.02	0.03	0.0084	0.0084	R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+,RAB3GAP1->RAB3_GTPase_activating_protein_catalytic_subunit_1,chr2:135809835-135933964:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0168	TRUE	0	0	0	1	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	1	1	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	99	0	0.02	1	0.0084	0.0084	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0168	TRUE	30	67	4	15	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNAPC1--HIF1A	1	1	SNAPC1	1232	chr14:62229306:+	HIF1A	19322	chr14:62188227:+	ONLY_REF_SPLICE	NO	52	178	0.04	0.01	0.0084	0.0084	LOCAL_REARRANGEMENT:+:[14099],SNAPC1->chr14:62229075-62263146:+,small_nuclear_RNA_activating_complex_polypeptide_1,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0168	FALSE	0	0	0	1	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSBP2--EEF1E1	1	1	SSBP2	7522	chr5:80911292:-	EEF1E1	37921	chr6:8090514:-	ONLY_REF_SPLICE	NO	832	271	0	0.01	0.0084	0.0084	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,EEF1E1->chr6:8073593-8102811:-,eukaryotic_translation_elongation_factor_1_epsilon_1	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0168	FALSE	0	0	0	1	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBC1D14--RNF220	1	1	TBC1D14	6339	chr4:6969151:+	RNF220	28865	chr1:44876256:+	ONLY_REF_SPLICE	YES	557	178	0	0.01	0.0084	0.0084	TBC1D14->TBC1_domain_family_member_14,chr4:6910969-7034845:+,RNF220->Oncogene{Bushman},chr1:44870866-45117396:+,ring_finger_protein_220	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0168	FALSE	0	0	0	1	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TOP2B--NGLY1	1	1	TOP2B	31657	chr3:25640926:-	NGLY1	41695	chr3:25805802:-	ONLY_REF_SPLICE	YES	1424	160	0	0.01	0.0084	0.0084	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},LOCAL_REARRANGEMENT:-:[54037],TOP2B->Oncogene{Bushman},chr3:25639475-25706398:-,topoisomerase_(DNA)_II_beta,NGLY1->N-glycanase_1,chr3:25760435-25831530:-	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0168	FALSE	0	0	0	1	0	FALSE	ACH-000130
NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZMYM2--PSPC1	1	1	ZMYM2	2241	chr13:20534166:+	PSPC1	43003	chr13:20333558:-	ONLY_REF_SPLICE	NO	9	248	0.18	0.01	0.0084	0.0084	ZMYM2->Oncogene{Bushman},chr13:20532810-20665968:+,zinc_finger_MYM-type_containing_2,PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	NALM19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.18	0.0168	FALSE	0	0	0	1	0	FALSE	ACH-000130
LN319_CENTRAL_NERVOUS_SYSTEM	MAP3K13--ATR	82	123	MAP3K13	2430	chr3:185003431:+	ATR	80591	chr3:142172075:-	ONLY_REF_SPLICE	YES	119	11	0.63	0.95	1.0247	1.5371	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.63	0.95	2.5618	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	73	38	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9122	0.4749	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LN319_CENTRAL_NERVOUS_SYSTEM	0.99	1	1.3871	TRUE	508	994	45	981	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	74	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9247	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.9247	TRUE	402	216	10	229	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	CKS2--ZNF618	41	63	CKS2	1154	chr9:91926266:+	ZNF618	8790	chr9:116750601:+	ONLY_REF_SPLICE	YES	898	2	0.1	0.98	0.5124	0.7873	CKS2->CDC28_protein_kinase_regulatory_subunit_2,Oncogene{Bushman},chr9:91926113-91931618:+,ZNF618->chr9:116638562-116818871:+,zinc_finger_protein_618	LN319_CENTRAL_NERVOUS_SYSTEM	0.1	0.98	1.2997	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	49	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	304	8	0.15	0.87	0.6123	0.0375	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.15	0.87	0.6498	TRUE	519	3926	326	965	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RERE--TNFRSF9	43	19	RERE	16532	chr1:8568686:-	TNFRSF9	49541	chr1:7980983:-	ONLY_REF_SPLICE	YES	3	0	0.95	1	0.5374	0.2374	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,TNFRSF9->chr1:7979907-8000926:-,tumor_necrosis_factor_receptor_superfamily_member_9	LN319_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.7748	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MAP3K13--ATR	7	131	MAP3K13	7786	chr3:185081156:+	ATR	80591	chr3:142172075:-	ONLY_REF_SPLICE	YES	1	11	0.99	0.93	0.0875	1.637	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.93	0.99	1.7245	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MAP3K13--ATR	1	124	MAP3K13	3578	chr3:185009548:+	ATR	80591	chr3:142172075:-	ONLY_REF_SPLICE	NO	84	11	0.6	0.92	0.0125	1.5496	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.6	0.92	1.5621	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	31	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3874	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.3874	FALSE	230	193	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	28	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3499	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.3499	TRUE	7	10	0	216	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	24	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2999	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.2999	TRUE	0	0	0	518	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MAP3K13--ATR	7	52	MAP3K13	2430	chr3:185003431:+	ATR	84222	chr3:142168444:-	ONLY_REF_SPLICE	YES	119	19	0.33	0.76	0.0875	0.6498	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.33	0.76	0.7373	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	18	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	3	1	0.89	0.2249	0.0875	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.3124	TRUE	477	1352	189	275	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	10	19	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	35	50	0.45	0.37	0.125	0.2374	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LN319_CENTRAL_NERVOUS_SYSTEM	0.37	0.45	0.3624	TRUE	267	562	48	632	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MAP3K13--ATR	1	54	MAP3K13	7786	chr3:185081156:+	ATR	84222	chr3:142168444:-	ONLY_REF_SPLICE	NO	1	19	0.98	0.74	0.0125	0.6748	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.74	0.98	0.6873	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	39	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1418	0	0.03	1	0.05	0.4874	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.5374	FALSE	216	209	16	281	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	42	MT-ND4	2324	chrM:12083:+	MT-ATP8	5419	chrM:8406:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0.5249	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.5624	FALSE	209	205	15	279	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	13	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1625	0.025	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN319_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.1875	FALSE	499	1288	110	792	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	6	28	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	16406	0	0	1	0.075	0.3499	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.4249	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	13	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1625	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.1625	FALSE	231	205	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	39	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	5074	0	0.01	1	0.0375	0.4874	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.5249	FALSE	222	212	16	282	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	12	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.15	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.15	FALSE	230	193	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	9	12	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18906	16	0	0.57	0.1125	0.15	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.57	0.2625	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	30	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4716	112	0.01	0.23	0.0375	0.3749	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0.01	0.23	0.4124	FALSE	218	210	16	281	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	10	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.125	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.125	FALSE	230	198	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	28	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	17417	0	0	1	0.0375	0.3499	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.3874	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	28	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	17372	0	0	1	0.0375	0.3499	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.3874	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	23	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15316	112	0	0.19	0.05	0.2874	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.19	0.3374	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	23	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14784	112	0	0.19	0.05	0.2874	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.19	0.3374	FALSE	231	215	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	6	14	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17468	112	0	0.15	0.075	0.175	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.15	0.25	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	7	9	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20646	0	0	1	0.0875	0.1125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.2	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	9	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	38	1	0.21	0.1125	0.0125	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN319_CENTRAL_NERVOUS_SYSTEM	0.21	1	0.125	TRUE	458	1351	185	561	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	20	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	18826	0	0	1	0.05	0.2499	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.2999	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	CALM3--MT-ND4L	8	3	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1520	0	0.01	1	0.1	0.0375	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN319_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.1375	FALSE	1	1	0	107	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	15	MT-ND4	1544	chrM:11303:+	MT-ATP8	5455	chrM:8442:+	INCL_NON_REF_SPLICE	YES	22617	0	0	1	0.0625	0.1874	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.2499	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	ZNF618--ZNF484	1	30	ZNF618	12128	chr9:116791252:+	ZNF484	30317	chr9:95637341:-	ONLY_REF_SPLICE	NO	2	2	0.94	0.94	0.0125	0.3749	HGNC_GENEFAM,PROTCLUST,ZNF618->chr9:116638562-116818871:+,zinc_finger_protein_618,ZNF484->chr9:95607874-95640304:-,zinc_finger_protein_484	LN319_CENTRAL_NERVOUS_SYSTEM	0.94	0.94	0.3874	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	21	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	18297	0	0	1	0.0375	0.2624	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.2999	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	ZNF618--ZNF484	2	25	ZNF618	12128	chr9:116791252:+	ZNF484	31362	chr9:95618600:-	ONLY_REF_SPLICE	YES	2	3	0.93	0.9	0.025	0.3124	HGNC_GENEFAM,PROTCLUST,ZNF618->chr9:116638562-116818871:+,zinc_finger_protein_618,ZNF484->chr9:95607874-95640304:-,zinc_finger_protein_484	LN319_CENTRAL_NERVOUS_SYSTEM	0.9	0.93	0.3374	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	8	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.1	FALSE	231	204	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	12	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	18463	1704	0	0.01	0.0625	0.15	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.2125	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	16	MT-ND4	1564	chrM:11323:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	NO	22220	0	0	1	0.05	0.1999	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.2499	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	SLC1A5--MT-ND4L	8	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.1	FALSE	0	0	0	189	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	10	MT-ND4	1538	chrM:11297:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	22987	168	0	0.08	0.0625	0.125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.08	0.1875	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	18	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18609	0	0	1	0.0375	0.2249	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.2624	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	9	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	20606	0	0	1	0.0625	0.1125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.175	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	7	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0875	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.0875	FALSE	231	204	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	15	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	18147	0	0	1	0.0375	0.1874	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.2249	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	5	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.0625	0.0875	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN319_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.15	FALSE	499	1288	110	792	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	ZNF618--ZNF484	4	11	ZNF618	10076	chr9:116779064:+	ZNF484	30317	chr9:95637341:-	ONLY_REF_SPLICE	YES	18	2	0.45	0.88	0.05	0.1375	HGNC_GENEFAM,PROTCLUST,ZNF618->chr9:116638562-116818871:+,zinc_finger_protein_618,ZNF484->chr9:95607874-95640304:-,zinc_finger_protein_484	LN319_CENTRAL_NERVOUS_SYSTEM	0.45	0.88	0.1875	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	3	13	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	37	52	0.3	0.24	0.0375	0.1625	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LN319_CENTRAL_NERVOUS_SYSTEM	0.24	0.3	0.2	TRUE	267	562	48	632	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	8	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	17468	2097	0	0.01	0.05	0.1	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.15	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	6	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.075	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.075	TRUE	0	1	0	48	1	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	11	MT-ND4	1531	chrM:11290:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	23018	6	0	0.7	0.0375	0.1375	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.7	0.175	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	ZNF618--ZNF484	3	11	ZNF618	10076	chr9:116779064:+	ZNF484	31362	chr9:95618600:-	ONLY_REF_SPLICE	YES	18	3	0.44	0.82	0.0375	0.1375	HGNC_GENEFAM,PROTCLUST,ZNF618->chr9:116638562-116818871:+,zinc_finger_protein_618,ZNF484->chr9:95607874-95640304:-,zinc_finger_protein_484	LN319_CENTRAL_NERVOUS_SYSTEM	0.44	0.82	0.175	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	10	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22211	112	0	0.1	0.0375	0.125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.1	0.1625	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	1	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	19947	1704	0	0	0.0625	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	0	0.075	FALSE	231	205	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	9	MT-ND4	1472	chrM:11231:+	MT-ATP8	5380	chrM:8367:+	INCL_NON_REF_SPLICE	YES	20671	0	0	1	0.0375	0.1125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.15	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.0375	0.1125	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN319_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.15	FALSE	499	1288	110	792	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	4	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	3	1	0.75	0.05	0.0625	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.1125	TRUE	274	363	69	150	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	4	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	14134	0	0	1	0.05	0.05	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.1	FALSE	230	197	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.0625	FALSE	231	205	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	7	MT-ND4	1510	chrM:11269:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	21627	16	0	0.38	0.0375	0.0875	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.38	0.125	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	7	MT-ND4	1572	chrM:11331:+	MT-ATP8	5534	chrM:8521:+	INCL_NON_REF_SPLICE	YES	21573	2111	0	0	0.0375	0.0875	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	0	0.125	FALSE	231	217	16	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	3	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0.0375	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.0875	FALSE	499	1288	110	792	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	6	MT-ND4	1311	chrM:11070:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	19870	0	0	1	0.0375	0.075	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.1125	FALSE	231	205	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.05	0.025	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN319_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.075	FALSE	499	1288	110	792	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	GDAP1--RP11-758M4.1	4	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	76	0	0.06	1	0.05	0.0125	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	LN319_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0625	TRUE	7	28	0	43	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18444	112	0	0.04	0.05	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.04	0.0625	FALSE	231	205	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	5	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	18363	0	0	1	0.0375	0.0625	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.1	FALSE	231	205	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	1	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	2277	1	0	0.83	0.05	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.83	0.0625	FALSE	230	191	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	5	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0.0625	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.1	FALSE	499	1288	110	792	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	5	MT-ND6	1084	chrM:14590:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0375	0.0625	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LN319_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.1	FALSE	499	1288	110	792	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.05	0.0125	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.0625	FALSE	292	1546	117	613	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	4	1	XXbac-BPG252P9.9	1083	chr6:30691572:-	TUBBP2	4900	chr13:41959193:-	INCL_NON_REF_SPLICE	YES	3146	0	0	1	0.05	0.0125	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.0625	FALSE	0	1	0	48	1	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.05	FALSE	230	198	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	4	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	14528	0	0	1	0.0375	0.05	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.0875	FALSE	231	204	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	8	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	3	1	0.77	0.025	0.1	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.77	1	0.125	TRUE	160	277	29	98	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.05	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.05	TRUE	465	1949	224	605	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	SLC1A5--MT-ND4L	4	0	SLC1A5	6497	chr19:47282001:-	MT-ND4L	13018	chrM:10625:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.05	FALSE	0	0	0	189	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	AC131097.3--AC093642.5	3	3	AC131097.3	2273	chr2:242824786:+	AC093642.5	11670	chr2:243037038:+	ONLY_REF_SPLICE	YES	0	2	1	0.75	0.0375	0.0375	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	LN319_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.075	FALSE	3	20	2	16	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	1	MT-ND4	1084	chrM:10843:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	5890	0	0	1	0.0375	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.05	FALSE	230	193	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	1	MT-ND4	1285	chrM:11044:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	16630	10	0	0.29	0.0375	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.29	0.05	FALSE	231	205	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	PHLDA1--MT-ATP8	3	1	PHLDA1	4283	chr12:76424430:-	MT-ATP8	12601	chrM:8480:+	INCL_NON_REF_SPLICE	YES	303	562	0.01	0.01	0.0375	0.0125	PHLDA1->chr12:76419227-76427712:-,pleckstrin_homology_like_domain_family_A_member_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.05	FALSE	0	0	0	3	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	SPTBN4--JAK3	2	5	SPTBN4	13287	chr19:41012293:+	JAK3	56908	chr19:17946024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0.0625	SPTBN4->chr19:40972148-41082370:+,spectrin_beta,_non-erythrocytic_4,JAK3->ArcherDX_panel,FoundationOne_panel,Janus_kinase_3,Oncogene{Bushman},OncomapV4_panel,chr19:17935589-17958880:-	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.0875	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	3	1	XXbac-BPG252P9.9	1068	chr6:30691587:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	2554	0	0	1	0.0375	0.0125	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.05	FALSE	0	1	0	48	1	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	3	1	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	NO	3530	0	0	1	0.0375	0.0125	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	LN319_CENTRAL_NERVOUS_SYSTEM	0	1	0.05	FALSE	0	1	0	48	1	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.0375	FALSE	231	204	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	0	MT-ND4	1003	chrM:10762:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.0375	FALSE	230	189	14	283	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	8	RP11-444D3.1	9606	chr12:24366277:-	SOX5	13900	chr12:24102595:-	ONLY_REF_SPLICE	NO	0	1	1	0.9	0.0125	0.1	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.9	1	0.1125	TRUE	8	10	1	12	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	SLC1A5--MT-ND4L	3	0	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.0375	FALSE	0	0	0	189	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	2	2	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	40	1	0.09	0.025	0.025	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.09	1	0.05	FALSE	141	264	50	91	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RP5-886K2.3--LUZP1	2	2	RP5-886K2.3	2405	chr1:24098601:-	LUZP1	11468	chr1:23436143:-	ONLY_REF_SPLICE	YES	8	3	0.33	0.57	0.025	0.025	RP5-886K2.3->chr1:24086872-24104777:-,LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1	LN319_CENTRAL_NERVOUS_SYSTEM	0.33	0.57	0.05	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	LINC00578--SPIN1	2	0	LINC00578	1190	chr3:177159898:+	SPIN1	13264	chr9:91031559:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	LINC00578->chr3:177159709-177470093:+,long_intergenic_non-protein_coding_RNA_578,SPIN1->chr9:91003334-91093609:+,spindlin_1	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MARCH6--RICTOR	2	0	MARCH6	1215	chr5:10354029:+	RICTOR	40875	chr5:39021238:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6,RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MEF2B--SRSF3	2	0	MEF2B	5670	chr19:19291495:-	SRSF3	21870	chr6:36569739:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	MEF2B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:19256377-19303400:-,myocyte_enhancer_factor_2B,SRSF3->Oncogene{Bushman},chr6:36562145-36573377:+,serine/arginine-rich_splicing_factor_3	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	MINOS1--CAPZB	2	0	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.025	TRUE	2	7	0	21	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	PAPD4--MEG8	2	0	PAPD4	8358	chr5:78919312:+	MEG8	35325	chr14:101402109:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	PAPD4->PAP_associated_domain_containing_4,chr5:78907943-78982471:+,MEG8->chr14:101361107-101402336:+,maternally_expressed_8_(non-protein_coding)	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RP11-435B5.4--ATAD3B	2	0	RP11-435B5.4	2843	chr1:143465380:-	ATAD3B	31413	chr1:1424584:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	RP11-435B5.4->chr1:143354963-143467632:-,ATAD3B->ATPase_family,_AAA_domain_containing_3B,chr1:1407143-1433228:+	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	SP3--OLA1	2	0	SP3	2942	chr2:174828489:-	OLA1	22831	chr2:175094179:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	SP3->Sp3_transcription_factor,chr2:174771187-174830430:-,OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.025	TRUE	0	0	0	2	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	STIP1--MFSD10	2	0	STIP1	1999	chr11:63953742:+	MFSD10	16532	chr4:2935671:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1,MFSD10->chr4:2932288-2936586:-,major_facilitator_superfamily_domain_containing_10	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	SYNJ2BP--SFPQ	2	0	SYNJ2BP	1162	chr14:70883617:-	SFPQ	22362	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	SYNJ2BP->chr14:70838148-70883778:-,synaptojanin_2_binding_protein,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	LN319_CENTRAL_NERVOUS_SYSTEM	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	SPTBN4--JAK3	1	3	SPTBN4	13287	chr19:41012293:+	JAK3	58553	chr19:17943738:-	ONLY_REF_SPLICE	NO	0	3	1	0.57	0.0125	0.0375	SPTBN4->chr19:40972148-41082370:+,spectrin_beta,_non-erythrocytic_4,JAK3->ArcherDX_panel,FoundationOne_panel,Janus_kinase_3,Oncogene{Bushman},OncomapV4_panel,chr19:17935589-17958880:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.57	1	0.05	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	1	2	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	2503	249	0	0.01	0.0125	0.025	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0375	FALSE	0	20	0	35	2	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	1	2	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	NO	2835	249	0	0.01	0.0125	0.025	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0375	FALSE	0	7	0	19	1	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	123	0.6	0.02	0.0125	0.025	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LN319_CENTRAL_NERVOUS_SYSTEM	0.02	0.6	0.0375	FALSE	16	356	14	466	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	1	2	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	40	1	0.07	0.0125	0.025	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.0375	FALSE	49	120	16	70	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RP11-349A22.5--PSMA3	1	2	RP11-349A22.5	10690	chr14:58740697:-	PSMA3	22199	chr14:58718837:+	ONLY_REF_SPLICE	YES	38	816	0.07	0	0.0125	0.025	NEIGHBORS_OVERLAP:-:+:[6647],RP11-349A22.5->chr14:58732083-58764852:-,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.07	0.0375	FALSE	0	0	0	3	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RP5-886K2.3--LUZP1	1	2	RP5-886K2.3	2405	chr1:24098601:-	LUZP1	11991	chr1:23435620:-	ONLY_REF_SPLICE	YES	8	16	0.27	0.16	0.0125	0.025	RP5-886K2.3->chr1:24086872-24104777:-,LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1	LN319_CENTRAL_NERVOUS_SYSTEM	0.16	0.27	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RPS6KB1--VMP1	1	2	RPS6KB1	1240	chr17:57970686:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	103	520	0.03	0.01	0.0125	0.025	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	LN319_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0375	FALSE	0	9	0	10	6	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	3551	184	0	0.02	0.0125	0.025	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0375	FALSE	6	50	7	115	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	ABCA1--SLC44A1	1	1	ABCA1	1303	chr9:107690216:-	SLC44A1	60423	chr9:108061501:+	ONLY_REF_SPLICE	YES	121	7	0.02	0.22	0.0125	0.0125	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Nerve=[count:2=pct:1.2]},GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},ABCA1->ATP_binding_cassette_subfamily_A_member_1,Oncogene{Bushman},chr9:107543283-107690518:-,SLC44A1->chr9:108006903-108201452:+,solute_carrier_family_44_member_1	LN319_CENTRAL_NERVOUS_SYSTEM	0.02	0.22	0.025	TRUE	1	0	0	1	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	ADSS--AKT3	1	1	ADSS	1500	chr1:244614937:-	AKT3	30611	chr1:243859018:-	ONLY_REF_SPLICE	YES	242	49	0.01	0.04	0.0125	0.0125	ADSS->adenylosuccinate_synthase,chr1:244571796-244615436:-,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3	LN319_CENTRAL_NERVOUS_SYSTEM	0.01	0.04	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	AP000797.3--AP000797.4	1	1	AP000797.3	2163	chr11:115547499:+	AP000797.4	9961	chr11:115812276:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0125	0.0125	NEIGHBORS[89628],AP000797.3->chr11:115530376-115713864:+,AP000797.4->chr11:115803492-115813713:+	LN319_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.025	FALSE	3	3	0	1	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	BTBD9--ZFAND3	1	1	BTBD9	13342	chr6:38312760:-	ZFAND3	31104	chr6:38029369:+	ONLY_REF_SPLICE	YES	40	70	0.05	0.03	0.0125	0.0125	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[13827],BTBD9->BTB_domain_containing_9,chr6:38136227-38607924:-,ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3	LN319_CENTRAL_NERVOUS_SYSTEM	0.03	0.05	0.025	TRUE	0	0	0	1	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	CPQ--SDC2	1	1	CPQ	1176	chr8:97657630:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	NO	35	1084	0.05	0	0.0125	0.0125	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	LN319_CENTRAL_NERVOUS_SYSTEM	0	0.05	0.025	FALSE	1	37	5	9	9	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	CRIM1--FEZ2	1	1	CRIM1	21418	chr2:36764689:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	248	249	0.01	0.01	0.0125	0.0125	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	LN319_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.025	FALSE	1	4	0	11	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	9	0	0.18	1	0.0125	0.0125	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.18	1	0.025	FALSE	164	806	69	479	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	3	123	0.4	0.02	0.0125	0.0125	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LN319_CENTRAL_NERVOUS_SYSTEM	0.02	0.4	0.025	FALSE	0	48	1	163	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	SPAG9--NME1	1	1	SPAG9	11867	chr17:49097520:-	NME1	48420	chr17:49233012:+	ONLY_REF_SPLICE	YES	181	134	0.01	0.01	0.0125	0.0125	LOCAL_INVERSION:-:+:[32671],SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,NME1->NME/NM23_nucleoside_diphosphate_kinase_1,chr17:49230897-49239789:+	LN319_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	SPTBN4--JAK3	1	1	SPTBN4	13287	chr19:41012293:+	JAK3	59684	chr19:17942607:-	ONLY_REF_SPLICE	YES	0	3	1	0.4	0.0125	0.0125	SPTBN4->chr19:40972148-41082370:+,spectrin_beta,_non-erythrocytic_4,JAK3->ArcherDX_panel,FoundationOne_panel,Janus_kinase_3,Oncogene{Bushman},OncomapV4_panel,chr19:17935589-17958880:-	LN319_CENTRAL_NERVOUS_SYSTEM	0.4	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000128
LN319_CENTRAL_NERVOUS_SYSTEM	SYT11--DAP3	1	1	SYT11	3114	chr1:155838582:+	DAP3	18871	chr1:155695173:+	ONLY_REF_SPLICE	YES	329	348	0.01	0.01	0.0125	0.0125	SYT11->chr1:155829300-155854990:+,synaptotagmin_11,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	LN319_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000128
KELLY_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	83	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.3478	0.3085	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KELLY_AUTONOMIC_GANGLIA	0.99	1	1.6563	TRUE	508	994	45	981	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	52	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.8444	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KELLY_AUTONOMIC_GANGLIA	1	1	0.8444	TRUE	519	3926	326	965	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	BAGE2--CTBP2P1	44	12	BAGE2	5645	chr21:11058161:-	CTBP2P1	23085	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	43	0	0.57	1	0.7145	0.1949	BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	KELLY_AUTONOMIC_GANGLIA	0.57	1	0.9094	TRUE	0	0	0	6	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	ZNF654--HMGB2	41	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6658	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KELLY_AUTONOMIC_GANGLIA	1	1	0.6658	TRUE	0	0	0	518	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	36	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	4	1	0.91	0.5846	0.0487	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KELLY_AUTONOMIC_GANGLIA	0.91	1	0.6333	TRUE	458	1351	185	561	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	PTPRN2--CYP3A7	32	12	PTPRN2	16301	chr7:157475417:-	CYP3A7	33181	chr7:99328775:-	ONLY_REF_SPLICE	YES	17	0	0.72	1	0.5196	0.1949	PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,CYP3A7->chr7:99302660-99332819:-,cytochrome_P450_family_3_subfamily_A_member_7	KELLY_AUTONOMIC_GANGLIA	0.72	1	0.7145	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	AP003900.6--AP000345.1	22	6	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.3572	0.0974	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	KELLY_AUTONOMIC_GANGLIA	0.97	1	0.4546	TRUE	0	8	0	37	1	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	22	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3572	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KELLY_AUTONOMIC_GANGLIA	1	1	0.3572	TRUE	465	1949	224	605	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	TXNL4A--ME2	17	1	TXNL4A	1099	chr18:77793851:-	ME2	28975	chr18:48466658:+	ONLY_REF_SPLICE	YES	1	44	0.95	0.29	0.2761	0.0162	TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A,ME2->chr18:48405419-48474691:+,malic_enzyme_2	KELLY_AUTONOMIC_GANGLIA	0.29	0.95	0.2923	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	EEF1DP3--FRY	14	4	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	0	1	1	0.95	0.2273	0.065	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	KELLY_AUTONOMIC_GANGLIA	0.95	1	0.2923	FALSE	20	24	2	21	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	MT-TA--MT-TC	13	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2111	0.0487	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KELLY_AUTONOMIC_GANGLIA	1	1	0.2598	FALSE	462	80	0	856	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	TXNL4A--ME2	13	2	TXNL4A	1099	chr18:77793851:-	ME2	28257	chr18:48465940:+	ONLY_REF_SPLICE	YES	1	51	0.94	0.23	0.2111	0.0325	TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A,ME2->chr18:48405419-48474691:+,malic_enzyme_2	KELLY_AUTONOMIC_GANGLIA	0.23	0.94	0.2436	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	EML5--FOXN3	11	5	EML5	20117	chr14:89154615:-	FOXN3	83496	chr14:89591570:-	ONLY_REF_SPLICE	YES	127	5	0.11	0.76	0.1786	0.0812	EML5->chr14:89078775-89259096:-,echinoderm_microtubule_associated_protein_like_5,FOXN3->chr14:89591215-90085493:-,forkhead_box_N3	KELLY_AUTONOMIC_GANGLIA	0.11	0.76	0.2598	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	11	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1786	0.065	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KELLY_AUTONOMIC_GANGLIA	1	1	0.2436	TRUE	477	1352	189	275	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	EML5--FOXN3	9	6	EML5	20117	chr14:89154615:-	FOXN3	83282	chr14:89591784:-	ONLY_REF_SPLICE	YES	127	1	0.11	0.94	0.1461	0.0974	EML5->chr14:89078775-89259096:-,echinoderm_microtubule_associated_protein_like_5,FOXN3->chr14:89591215-90085493:-,forkhead_box_N3	KELLY_AUTONOMIC_GANGLIA	0.11	0.94	0.2435	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	10	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.1624	0.0162	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KELLY_AUTONOMIC_GANGLIA	0.92	1	0.1786	FALSE	499	1288	110	792	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	RPRD2--ASPH	10	1	RPRD2	4855	chr1:150390201:+	ASPH	60393	chr8:62465679:-	ONLY_REF_SPLICE	YES	27	7	0.29	0.61	0.1624	0.0162	RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	KELLY_AUTONOMIC_GANGLIA	0.29	0.61	0.1786	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	TERT--ALK	9	4	TERT	12588	chr5:1264519:-	ALK	27264	chr2:29606725:-	ONLY_REF_SPLICE	YES	5	28	0.72	0.32	0.1461	0.065	{Klijn_CCL:Brain=1},TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	KELLY_AUTONOMIC_GANGLIA	0.32	0.72	0.2111	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	6	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0974	0.065	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KELLY_AUTONOMIC_GANGLIA	0.83	1	0.1624	FALSE	499	1288	110	792	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	RP11-123O10.4--GRIP1	7	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1137	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KELLY_AUTONOMIC_GANGLIA	1	1	0.1137	FALSE	416	2512	207	587	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0974	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KELLY_AUTONOMIC_GANGLIA	1	1	0.0974	FALSE	183	104	9	328	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	RNF165--DOK6	6	0	RNF165	2507	chr18:43914298:+	DOK6	23417	chr18:67231723:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0974	0	RNF165->chr18:43906772-44043103:+,ring_finger_protein_165,DOK6->chr18:67068291-67516323:+,docking_protein_6	KELLY_AUTONOMIC_GANGLIA	1	1	0.0974	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0812	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KELLY_AUTONOMIC_GANGLIA	1	1	0.0812	FALSE	13	9	0	364	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0812	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KELLY_AUTONOMIC_GANGLIA	1	1	0.0812	FALSE	13	9	0	364	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	ALK--CLPTM1L	4	2	ALK	6065	chr2:29754781:-	CLPTM1L	46210	chr5:1331998:-	ONLY_REF_SPLICE	YES	25	171	0.19	0.03	0.065	0.0325	ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-,CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-	KELLY_AUTONOMIC_GANGLIA	0.03	0.19	0.0975	TRUE	0	0	0	1	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	4	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KELLY_AUTONOMIC_GANGLIA	1	1	0.065	FALSE	183	104	9	328	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KELLY_AUTONOMIC_GANGLIA	1	1	0.065	FALSE	183	104	9	328	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	TERT--ALK	4	0	TERT	11385	chr5:1266579:-	ALK	27264	chr2:29606725:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.065	0	{Klijn_CCL:Brain=1},TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	KELLY_AUTONOMIC_GANGLIA	1	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	3	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0.0487	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KELLY_AUTONOMIC_GANGLIA	1	1	0.0974	FALSE	499	1288	110	792	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	MT-TA--MT-TC	3	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0.0487	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KELLY_AUTONOMIC_GANGLIA	1	1	0.0974	FALSE	462	80	0	856	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	AKAP9--ANKIB1	3	2	AKAP9	36143	chr7:91700323:+	ANKIB1	67125	chr7:91924203:+	ONLY_REF_SPLICE	YES	25	6	0.17	0.45	0.0487	0.0325	AKAP9->A-kinase_anchoring_protein_9,Oncogene{Bushman},chr7:91570181-91739987:+,ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+	KELLY_AUTONOMIC_GANGLIA	0.17	0.45	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	EML5--FOXN3	2	6	EML5	29718	chr14:89123720:-	FOXN3	83282	chr14:89591784:-	ONLY_REF_SPLICE	YES	115	1	0.07	0.89	0.0325	0.0974	EML5->chr14:89078775-89259096:-,echinoderm_microtubule_associated_protein_like_5,FOXN3->chr14:89591215-90085493:-,forkhead_box_N3	KELLY_AUTONOMIC_GANGLIA	0.07	0.89	0.1299	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	ASPH--RPRD2	3	1	ASPH	36430	chr8:62468483:-	RPRD2	53714	chr1:150413399:+	ONLY_REF_SPLICE	YES	7	26	0.36	0.13	0.0487	0.0162	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2	KELLY_AUTONOMIC_GANGLIA	0.13	0.36	0.0649	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0487	0.0162	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KELLY_AUTONOMIC_GANGLIA	0.8	1	0.0649	FALSE	499	1288	110	792	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	12	1	0.25	0.0487	0.0162	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KELLY_AUTONOMIC_GANGLIA	0.25	1	0.0649	FALSE	16	356	14	466	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	RP11-435B5.4--GNAS	3	1	RP11-435B5.4	2843	chr1:143465380:-	GNAS	35434	chr20:57470667:+	ONLY_REF_SPLICE	YES	14	1532	0.22	0	0.0487	0.0162	RP11-435B5.4->chr1:143354963-143467632:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	KELLY_AUTONOMIC_GANGLIA	0	0.22	0.0649	FALSE	0	0	0	2	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KELLY_AUTONOMIC_GANGLIA	1	1	0.0487	FALSE	183	104	9	328	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	TXNL4A--ME2	2	2	TXNL4A	2156	chr18:77790521:-	ME2	28257	chr18:48465940:+	ONLY_REF_SPLICE	YES	3	51	0.57	0.07	0.0325	0.0325	TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A,ME2->chr18:48405419-48474691:+,malic_enzyme_2	KELLY_AUTONOMIC_GANGLIA	0.07	0.57	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	CPSF6--C9orf3	2	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	162	25	0.02	0.11	0.0325	0.0162	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	KELLY_AUTONOMIC_GANGLIA	0.02	0.11	0.0487	TRUE	53	99	2	44	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	ATP5A1--ILF3	2	0	ATP5A1	4810	chr18:43675019:-	ILF3	27736	chr19:10792669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	ATP5A1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_alpha_subunit_1,_cardiac_muscle,chr18:43664110-43684300:-,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	KELLY_AUTONOMIC_GANGLIA	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	CTD-2281E23.2--DLGAP2	2	0	CTD-2281E23.2	3418	chr8:1208883:+	DLGAP2	8510	chr8:1449532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	GTEx_FI:{Testis=[count:34=pct:32.4],Brain=[count:24=pct:3.6],Pituitary=[count:4=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Thyroid=[count:2=pct:1.1]},CTD-2281E23.2->chr8:1054882-1212580:+,DLGAP2->chr8:1449532-1656642:+,discs_large_homolog_associated_protein_2	KELLY_AUTONOMIC_GANGLIA	1	1	0.0325	TRUE	49	61	1	13	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	DHCR24--TAF12	2	0	DHCR24	2757	chr1:55349291:-	TAF12	18192	chr1:28948677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	KELLY_AUTONOMIC_GANGLIA	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	LINC00595--LINC00856	2	0	LINC00595	1159	chr10:80027243:+	LINC00856	18492	chr10:80285087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[63267],LINC00595->chr10:80027085-80090352:+,long_intergenic_non-protein_coding_RNA_595,LINC00856->chr10:80008505-80434724:+,long_intergenic_non-protein_coding_RNA_856	KELLY_AUTONOMIC_GANGLIA	1	1	0.0325	FALSE	0	15	1	2	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	RNF165--DOK6	2	0	RNF165	2507	chr18:43914298:+	DOK6	24525	chr18:67266620:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0325	0	RNF165->chr18:43906772-44043103:+,ring_finger_protein_165,DOK6->chr18:67068291-67516323:+,docking_protein_6	KELLY_AUTONOMIC_GANGLIA	1	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	1	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0162	0.065	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KELLY_AUTONOMIC_GANGLIA	1	1	0.0812	TRUE	160	277	29	98	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	1	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0162	0.0487	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KELLY_AUTONOMIC_GANGLIA	1	1	0.0649	TRUE	274	363	69	150	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	CACNA1B--CCND1	1	1	CACNA1B	23294	chr9:140919624:+	CCND1	62855	chr11:69462762:+	ONLY_REF_SPLICE	YES	17	439	0.11	0	0.0162	0.0162	CACNA1B->calcium_voltage-gated_channel_subunit_alpha1_B,chr9:140772241-141019076:+,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	KELLY_AUTONOMIC_GANGLIA	0	0.11	0.0324	FALSE	0	0	0	1	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	EEF1DP3--FRY	1	1	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	2	1	0.5	0.67	0.0162	0.0162	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	KELLY_AUTONOMIC_GANGLIA	0.5	0.67	0.0324	FALSE	18	26	2	21	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	OAZ1--KLF16	1	1	OAZ1	1259	chr19:2269743:+	KLF16	9779	chr19:1854759:-	ONLY_REF_SPLICE	YES	895	6	0	0.25	0.0162	0.0162	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Whole_Blood=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,KLF16->Kruppel-like_factor_16,chr19:1852399-1863567:-	KELLY_AUTONOMIC_GANGLIA	0	0.25	0.0324	FALSE	6	0	0	3	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	12	1	0.14	0.0162	0.0162	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KELLY_AUTONOMIC_GANGLIA	0.14	1	0.0324	FALSE	0	48	1	163	0	FALSE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	RPRD2--ASPH	1	1	RPRD2	4855	chr1:150390201:+	ASPH	61483	chr8:62460767:-	ONLY_REF_SPLICE	YES	27	9	0.07	0.18	0.0162	0.0162	RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	KELLY_AUTONOMIC_GANGLIA	0.07	0.18	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000259
KELLY_AUTONOMIC_GANGLIA	TRIM52--NPM1	1	1	TRIM52	2118	chr5:180687002:-	NPM1	19928	chr5:170834704:+	ONLY_REF_SPLICE	YES	8	1972	0.2	0	0.0162	0.0162	TRIM52->chr5:180681417-180688119:-,tripartite_motif_containing_52,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	KELLY_AUTONOMIC_GANGLIA	0	0.2	0.0324	FALSE	0	0	0	1	0	FALSE	ACH-000259
YD8_UPPER_AERODIGESTIVE_TRACT	FGD4--RP11-313F23.4	50	29	FGD4	1431	chr12:32552893:+	RP11-313F23.4	41180	chr12:34344367:-	ONLY_REF_SPLICE	YES	2	11	0.98	0.88	0.7403	0.4294	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,RP11-313F23.4->chr12:34343972-34371788:-	YD8_UPPER_AERODIGESTIVE_TRACT	0.88	0.98	1.1697	TRUE	0	1	0	1	1	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	51	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7551	0.2073	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.9624	TRUE	508	994	45	981	0	FALSE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	31	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.459	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.459	TRUE	519	3926	326	965	0	FALSE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	FGD4--RP11-313F23.4	13	32	FGD4	1431	chr12:32552893:+	RP11-313F23.4	37841	chr12:34371780:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.1925	0.4738	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,RP11-313F23.4->chr12:34343972-34371788:-	YD8_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.6663	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	16	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2369	0.0592	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.2961	FALSE	416	2512	207	587	0	FALSE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	FGD4--RP11-313F23.4	7	30	FGD4	1431	chr12:32552893:+	RP11-313F23.4	38906	chr12:34364956:-	ONLY_REF_SPLICE	YES	2	1	0.95	0.97	0.1036	0.4442	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,RP11-313F23.4->chr12:34343972-34371788:-	YD8_UPPER_AERODIGESTIVE_TRACT	0.95	0.97	0.5478	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	11	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.82	1	0.1629	0.0444	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	YD8_UPPER_AERODIGESTIVE_TRACT	0.82	1	0.2073	FALSE	292	1546	117	613	0	FALSE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	COL6A1--MT-ATP8	9	0	COL6A1	19255	chr21:47424442:+	MT-ATP8	22893	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1333	0	COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.1333	FALSE	0	0	0	1	0	FALSE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	COL1A1--MT-ATP8	8	0	COL1A1	16929	chr17:48262846:-	MT-ATP8	22228	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1185	0	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.1185	FALSE	1	2	0	2	0	FALSE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	MT-ND5--FTL	7	0	MT-ND5	2025	chrM:13361:+	FTL	5935	chr19:49468680:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1036	0	MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.1036	FALSE	0	0	0	1	0	FALSE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	5	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.5	1	0.074	0.0592	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	YD8_UPPER_AERODIGESTIVE_TRACT	0.5	1	0.1332	FALSE	164	806	69	479	0	FALSE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	4	1	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0592	0.0148	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	YD8_UPPER_AERODIGESTIVE_TRACT	0.62	1	0.074	FALSE	114	26	4	85	0	FALSE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	2	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.5	1	0.0296	0.0592	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	YD8_UPPER_AERODIGESTIVE_TRACT	0.5	1	0.0888	FALSE	125	705	46	456	0	FALSE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	POMGNT1--GLRX3	3	0	POMGNT1	8947	chr1:46657770:-	GLRX3	19839	chr10:131964771:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0444	0	POMGNT1->chr1:46654354-46685977:-,protein_O-linked_mannose_N-acetylglucosaminyltransferase_1_(beta_1,2-),GLRX3->chr10:131934663-131982785:+,glutaredoxin_3	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0444	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	PRR16--CTD-2334D19.1	2	4	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	23	0	0.21	1	0.0296	0.0592	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	YD8_UPPER_AERODIGESTIVE_TRACT	0.21	1	0.0888	FALSE	56	216	12	147	0	FALSE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	1	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.62	0.0148	0.1036	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	YD8_UPPER_AERODIGESTIVE_TRACT	0.62	1	0.1184	TRUE	458	1351	185	561	0	FALSE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	1	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	25	1	0.24	0.0148	0.1036	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	YD8_UPPER_AERODIGESTIVE_TRACT	0.24	1	0.1184	TRUE	465	1949	224	605	0	FALSE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	3	3	0.5	0.5	0.0296	0.0148	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	YD8_UPPER_AERODIGESTIVE_TRACT	0.5	0.5	0.0444	FALSE	25	145	6	90	0	FALSE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	RP11-152P17.2--RP11-127H5.1	2	1	RP11-152P17.2	3511	chr8:106939879:-	RP11-127H5.1	23283	chr8:106258521:+	ONLY_REF_SPLICE	YES	14	0	0.18	1	0.0296	0.0148	RP11-152P17.2->chr8:106792474-107072752:-,RP11-127H5.1->chr8:105602961-106431488:+	YD8_UPPER_AERODIGESTIVE_TRACT	0.18	1	0.0444	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	AC008753.6--POT1	2	0	AC008753.6	1199	chr19:54372163:-	POT1	8424	chr7:124569053:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	AC008753.6->chr19:54357835-54372361:-,POT1->chr7:124462440-124570037:-,protection_of_telomeres_1	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	ANKRD17--ZNF800	2	0	ANKRD17	24087	chr4:73984405:-	ZNF800	53061	chr7:127017383:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	ANKRD17->ankyrin_repeat_domain_17,chr4:73939093-74124515:-,ZNF800->chr7:126986844-127071978:-,zinc_finger_protein_800	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	APOLD1--MT1F	2	0	APOLD1	1180	chr12:12879030:+	MT1F	23273	chr16:56692587:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+,MT1F->chr16:56691606-56694610:+,metallothionein_1F	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	CASP8--CDK19	2	0	CASP8	1670	chr2:202098835:+	CDK19	29067	chr6:111067404:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	CASP8->Oncogene{Bushman},caspase_8,chr2:202098166-202152434:+,CDK19->chr6:110931181-111137161:-,cyclin-dependent_kinase_19	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	DANCR--FSD1L	2	0	DANCR	1530	chr4:53579126:+	FSD1L	25141	chr9:108301544:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,FSD1L->chr9:108210077-108314714:+,fibronectin_type_III_and_SPRY_domain_containing_1_like	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	ITGB1--RP11-313F23.4	2	0	ITGB1	26333	chr10:33197296:-	RP11-313F23.4	36677	chr12:34344367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1,RP11-313F23.4->chr12:34343972-34371788:-	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	KAT2B--TTC29	2	0	KAT2B	14612	chr3:20178544:+	TTC29	33623	chr4:147796080:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	KAT2B->chr3:20081515-20195896:+,lysine_acetyltransferase_2B,TTC29->chr4:147627790-147867034:-,tetratricopeptide_repeat_domain_29	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	LRRC27--AMOTL2	2	0	LRRC27	5691	chr10:134151199:+	AMOTL2	32694	chr3:134090336:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27,AMOTL2->angiomotin_like_2,chr3:134074716-134094321:-	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	PXN--OGDH	2	0	PXN	10891	chr12:120659426:-	OGDH	31371	chr7:44713386:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,OGDH->chr7:44646171-44748665:+,oxoglutarate_dehydrogenase	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	RANBP2--MYO10	2	0	RANBP2	25322	chr2:109389502:+	MYO10	51184	chr5:16764505:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	RANBP2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RAN_binding_protein_2,chr2:109335937-109402267:+,MYO10->chr5:16665395-16936372:-,myosin_X	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	RP11-386G11.10--SNIP1	2	0	RP11-386G11.10	1431	chr12:49521995:+	SNIP1	9258	chr1:38018348:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	RP11-386G11.10->chr12:49521565-49541652:+,SNIP1->Smad_nuclear_interacting_protein_1,chr1:38000050-38019903:-	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	STIL--CTPS1	2	0	STIL	17008	chr1:47745913:-	CTPS1	46968	chr1:41474331:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	STIL->Oncogene{Bushman},SCL/TAL1_interrupting_locus,chr1:47715811-47779819:-,CTPS1->CTP_synthase_1,chr1:41445007-41478235:+	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	TMLHE--CLIC2	2	0	TMLHE	2332	chrX:154842453:-	CLIC2	18105	chrX:154528458:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,CLIC2->chloride_intracellular_channel_2,chrX:154505500-154563966:-	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	5	6	1	7	0	FALSE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	YWHAE--SEPT9	2	0	YWHAE	1332	chr17:1303341:-	SEPT9	20080	chr17:75303223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	ZFP90--ANKRA2	2	0	ZFP90	7336	chr16:68592027:+	ANKRA2	25743	chr5:72849311:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	ZFP90->ZFP90_zinc_finger_protein,chr16:68563993-68609975:+,ANKRA2->ankyrin_repeat_family_A_member_2,chr5:72848160-72861511:-	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	ZNF594--PITPNA	2	0	ZNF594	1452	chr17:5094727:-	PITPNA	16093	chr17:1451681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	ZNF594->chr17:5082831-5095178:-,zinc_finger_protein_594,PITPNA->chr17:1421012-1466110:-,phosphatidylinositol_transfer_protein_alpha	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0148	0.0148	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	FALSE	93	270	15	244	0	FALSE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	RP11-152P17.2--RP11-127H5.1	1	1	RP11-152P17.2	1144	chr8:107072609:-	RP11-127H5.1	23283	chr8:106258521:+	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.0148	0.0148	RP11-152P17.2->chr8:106792474-107072752:-,RP11-127H5.1->chr8:105602961-106431488:+	YD8_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.0296	TRUE	0	0	0	1	0	TRUE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	RP11-494M8.4--OVCH2	1	1	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0148	0.0148	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	YD8_UPPER_AERODIGESTIVE_TRACT	0.67	1	0.0296	FALSE	32	0	0	22	0	FALSE	ACH-000630
YD8_UPPER_AERODIGESTIVE_TRACT	RP11-494M8.4--OVCH2	1	1	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0148	0.0148	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	YD8_UPPER_AERODIGESTIVE_TRACT	1	1	0.0296	FALSE	60	13	8	23	0	FALSE	ACH-000630
KD_SOFT_TISSUE	MT-TA--MT-TN	66	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.113	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KD_SOFT_TISSUE	1	1	1.113	FALSE	369	2501	205	193	0	FALSE	ACH-001099
KD_SOFT_TISSUE	TIMM23B--LINC00843	60	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0118	0.2529	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KD_SOFT_TISSUE	0.99	1	1.2647	TRUE	508	994	45	981	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND6--MT-TE	56	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9443	0.0169	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KD_SOFT_TISSUE	1	1	0.9612	FALSE	499	1288	110	792	0	FALSE	ACH-001099
KD_SOFT_TISSUE	TIMM23--RP11-464F9.1	43	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	240	4	0.16	0.92	0.7251	0.0337	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KD_SOFT_TISSUE	0.16	0.92	0.7588	TRUE	519	3926	326	965	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND6--MT-TE	33	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5565	0.0337	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KD_SOFT_TISSUE	1	1	0.5902	FALSE	499	1288	110	792	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-TA--MT-TC	31	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5228	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KD_SOFT_TISSUE	1	1	0.5228	FALSE	462	80	0	856	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-TA--MT-TN	23	26	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3878	0.4384	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KD_SOFT_TISSUE	1	1	0.8262	FALSE	369	2501	205	193	0	FALSE	ACH-001099
KD_SOFT_TISSUE	RP11-123O10.4--GRIP1	23	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3878	0.1518	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KD_SOFT_TISSUE	1	1	0.5396	FALSE	416	2512	207	587	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-TA--MT-TN	21	13	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3541	0.2192	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KD_SOFT_TISSUE	1	1	0.5733	FALSE	369	2501	205	193	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	19	15	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.3204	0.2529	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0.92	1	0.5733	FALSE	43	37	8	105	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND6--MT-TE	20	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.3373	0.1686	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KD_SOFT_TISSUE	0.88	1	0.5059	FALSE	499	1288	110	792	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-TA--MT-TN	19	13	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3204	0.2192	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KD_SOFT_TISSUE	1	1	0.5396	FALSE	369	2501	205	193	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	18	7	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	6729	10	0	0.71	0.3035	0.118	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	0.71	0.4215	FALSE	43	37	8	105	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND4--MT-ATP8	19	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3204	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	1	1	0.3204	FALSE	230	193	14	283	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-TA--MT-TN	6	46	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.1012	0.7757	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KD_SOFT_TISSUE	1	1	0.8769	FALSE	369	2501	205	193	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	14	10	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	3	442	0.89	0.05	0.2361	0.1686	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0.05	0.89	0.4047	FALSE	43	37	8	105	0	FALSE	ACH-001099
KD_SOFT_TISSUE	RP11-680G10.1--GSE1	14	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.68	0.2361	0.118	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KD_SOFT_TISSUE	0.68	1	0.3541	TRUE	458	1351	185	561	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-TA--MT-TN	6	34	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1012	0.5733	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KD_SOFT_TISSUE	1	1	0.6745	FALSE	369	2501	205	193	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ATP6--MT-RNR2	14	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2361	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KD_SOFT_TISSUE	1	1	0.2361	FALSE	63	17	1	58	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-TA--MT-TN	14	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2361	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KD_SOFT_TISSUE	1	1	0.2361	FALSE	369	2501	205	193	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ATP6--MT-RNR2	13	3	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	11251	13823	0	0	0.2192	0.0506	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KD_SOFT_TISSUE	0	0	0.2698	FALSE	63	17	1	58	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-TA--MT-TN	6	31	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1012	0.5228	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KD_SOFT_TISSUE	1	1	0.624	FALSE	369	2501	205	193	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ATP6--MT-RNR2	13	2	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	10897	13532	0	0	0.2192	0.0337	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KD_SOFT_TISSUE	0	0	0.2529	FALSE	63	17	1	58	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ATP6--MT-RNR2	13	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2192	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KD_SOFT_TISSUE	1	1	0.2192	FALSE	63	17	1	58	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND6--MT-TE	8	13	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.84	1	0.1349	0.2192	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KD_SOFT_TISSUE	0.84	1	0.3541	FALSE	499	1288	110	792	0	FALSE	ACH-001099
KD_SOFT_TISSUE	NIPA2--POLA1	11	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1855	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	KD_SOFT_TISSUE	1	1	0.1855	TRUE	46	1352	75	139	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ND6	9	3	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	1	3951	0.92	0	0.1518	0.0506	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	KD_SOFT_TISSUE	0	0.92	0.2024	FALSE	26	124	4	93	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	7	10	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	6	10	0.74	0.63	0.118	0.1686	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0.63	0.74	0.2866	FALSE	43	37	8	105	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	7	9	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	8546	0	0	1	0.118	0.1518	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	1	0.2698	FALSE	43	37	8	105	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND6--MT-TE	7	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.118	0.1518	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KD_SOFT_TISSUE	1	1	0.2698	FALSE	499	1288	110	792	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-TA--MT-TC	9	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1518	0.0169	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KD_SOFT_TISSUE	1	1	0.1687	FALSE	462	80	0	856	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND4--MT-ATP8	9	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1518	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	1	1	0.1518	FALSE	230	198	14	283	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ATP6--MT-RNR2	8	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1349	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KD_SOFT_TISSUE	1	1	0.1349	FALSE	63	17	1	58	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND2--MT-RNR2	8	0	MT-ND2	1459	chrM:4928:+	MT-RNR2	5624	chrM:2252:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1349	0	LOCAL_REARRANGEMENT:+:[1241],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KD_SOFT_TISSUE	1	1	0.1349	FALSE	19	92	8	6	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND4--MT-ATP8	8	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1349	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	1	1	0.1349	FALSE	231	205	14	283	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	3	20	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0.3373	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	1	1	0.3879	FALSE	43	37	8	105	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND6--MT-TE	8	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1349	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KD_SOFT_TISSUE	1	1	0.1349	FALSE	499	1288	110	792	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-TA--MT-TN	8	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1349	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KD_SOFT_TISSUE	1	1	0.1349	FALSE	369	2501	205	193	0	FALSE	ACH-001099
KD_SOFT_TISSUE	RP1-34H18.1--NAV3	7	4	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	73	1	0.13	0.118	0.0675	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	KD_SOFT_TISSUE	0.13	1	0.1855	TRUE	254	575	65	124	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND4--MT-ATP8	7	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15989	10	0	0.47	0.118	0.0337	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	0.47	0.1517	FALSE	231	217	16	283	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	5	9	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	7519	0	0	1	0.0843	0.1518	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	1	0.2361	FALSE	43	37	8	105	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ATP6--MT-RNR2	7	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.118	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KD_SOFT_TISSUE	1	1	0.118	FALSE	63	17	1	58	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND3--MT-ATP8	7	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.118	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	1	1	0.118	FALSE	351	233	23	137	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	4	12	MT-ND5	2852	chrM:14188:+	MT-ATP8	5903	chrM:8456:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0.2024	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	1	1	0.2699	FALSE	43	37	8	105	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	4	11	MT-ND5	2303	chrM:13639:+	MT-ATP8	5871	chrM:8424:+	INCL_NON_REF_SPLICE	YES	5518	0	0	1	0.0675	0.1855	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	1	0.253	FALSE	43	37	8	105	0	FALSE	ACH-001099
KD_SOFT_TISSUE	RP11-680G10.1--GSE1	6	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	14	1	0.39	0.1012	0.0506	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KD_SOFT_TISSUE	0.39	1	0.1518	TRUE	465	1949	224	605	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND6--MT-TE	3	14	MT-ND6	1289	chrM:14385:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0506	0.2361	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KD_SOFT_TISSUE	0.89	1	0.2867	FALSE	499	1288	110	792	0	FALSE	ACH-001099
KD_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	5	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	2	0.79	0.85	0.0843	0.1012	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KD_SOFT_TISSUE	0.79	0.85	0.1855	FALSE	192	492	57	212	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	3	13	MT-ND5	2648	chrM:13984:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	2364	0	0.01	1	0.0506	0.2192	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0.01	1	0.2698	FALSE	43	37	8	105	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	5	5	MT-ND5	1969	chrM:13305:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	7844	442	0	0.02	0.0843	0.0843	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	0.02	0.1686	FALSE	43	37	8	105	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND6--MT-TE	3	13	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.8	1	0.0506	0.2192	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KD_SOFT_TISSUE	0.8	1	0.2698	FALSE	499	1288	110	792	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	4	8	MT-ND5	2667	chrM:14003:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	1705	442	0.01	0.03	0.0675	0.1349	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0.01	0.03	0.2024	FALSE	43	37	8	105	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-TA--MT-TN	6	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1012	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KD_SOFT_TISSUE	1	1	0.1012	FALSE	369	2501	205	193	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	5	2	MT-ND5	1648	chrM:12984:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10293	28	0	0.2	0.0843	0.0337	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	0.2	0.118	FALSE	42	36	7	104	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND6--MT-TE	3	10	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0.1686	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KD_SOFT_TISSUE	1	1	0.2192	FALSE	499	1288	110	792	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	4	5	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8673	28	0	0.24	0.0675	0.0843	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	0.24	0.1518	FALSE	43	37	8	105	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ATP6--MT-RNR2	4	4	MT-ATP6	1172	chrM:8698:+	MT-RNR2	5313	chrM:2302:+	INCL_NON_REF_SPLICE	YES	11821	15825	0	0	0.0675	0.0675	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KD_SOFT_TISSUE	0	0	0.135	FALSE	63	17	1	58	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND3--MT-ATP8	5	0	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0843	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	1	1	0.0843	FALSE	351	233	23	137	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND4--MT-ATP8	5	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0843	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	1	1	0.0843	FALSE	230	193	14	283	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	5	0	MT-ND5	1570	chrM:12906:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0843	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	1	1	0.0843	FALSE	42	36	7	104	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND6--MT-TE	4	4	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0.0675	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KD_SOFT_TISSUE	1	1	0.135	FALSE	499	1288	110	792	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ATP6--MT-RNR2	4	3	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	10892	13493	0	0	0.0675	0.0506	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KD_SOFT_TISSUE	0	0	0.1181	FALSE	63	17	1	58	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	3	7	MT-ND5	2303	chrM:13639:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5518	28	0	0.26	0.0506	0.118	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	0.26	0.1686	FALSE	43	37	8	105	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	3	7	MT-ND5	2466	chrM:13802:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	5435	599	0	0.02	0.0506	0.118	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	0.02	0.1686	FALSE	43	37	8	105	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	3	7	MT-ND5	1875	chrM:13211:+	MT-ATP8	5863	chrM:8416:+	INCL_NON_REF_SPLICE	YES	8482	0	0	1	0.0506	0.118	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	1	0.1686	FALSE	43	37	8	105	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ATP6--MT-RNR2	4	2	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	9911	14271	0	0	0.0675	0.0337	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KD_SOFT_TISSUE	0	0	0.1012	FALSE	63	17	1	58	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND4--MT-ATP8	4	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14352	28	0	0.18	0.0675	0.0337	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	0.18	0.1012	FALSE	231	217	16	283	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-TA--MT-TC	4	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0.0337	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KD_SOFT_TISSUE	1	1	0.1012	FALSE	462	80	0	856	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ATP6--MT-RNR2	3	5	MT-ATP6	1200	chrM:8726:+	MT-RNR2	5307	chrM:2296:+	INCL_NON_REF_SPLICE	YES	13386	15101	0	0	0.0506	0.0843	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KD_SOFT_TISSUE	0	0	0.1349	FALSE	63	17	1	58	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND4--MT-ATP8	3	5	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	13794	713	0	0.01	0.0506	0.0843	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	0.01	0.1349	FALSE	231	217	16	283	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	4	1	MT-ND5	1635	chrM:12971:+	MT-ATP8	5887	chrM:8440:+	INCL_NON_REF_SPLICE	YES	10382	0	0	1	0.0675	0.0169	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	1	0.0844	FALSE	42	36	7	104	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	3	5	MT-ND5	1789	chrM:13125:+	MT-ATP8	5881	chrM:8434:+	INCL_NON_REF_SPLICE	YES	8227	0	0	1	0.0506	0.0843	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	1	0.1349	FALSE	43	37	8	105	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	4	1	MT-ND5	1627	chrM:12963:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	10697	778	0	0.01	0.0675	0.0169	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	0.01	0.0844	FALSE	42	36	7	104	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	4	1	MT-ND5	1590	chrM:12926:+	MT-ATP8	5921	chrM:8474:+	INCL_NON_REF_SPLICE	YES	10236	35	0	0.12	0.0675	0.0169	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	0.12	0.0844	FALSE	42	36	7	104	0	FALSE	ACH-001099
KD_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	4	0.73	0.67	0.0506	0.0843	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KD_SOFT_TISSUE	0.67	0.73	0.1349	FALSE	467	2173	244	435	0	FALSE	ACH-001099
KD_SOFT_TISSUE	HSPBP1--GRK5	4	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KD_SOFT_TISSUE	1	1	0.0675	TRUE	1	39	0	134	39	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KD_SOFT_TISSUE	1	1	0.0675	FALSE	63	17	1	58	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1123	chrM:8649:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KD_SOFT_TISSUE	1	1	0.0675	FALSE	63	17	1	58	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1121	chrM:8647:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KD_SOFT_TISSUE	1	1	0.0675	FALSE	63	17	1	58	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1222	chrM:10981:+	MT-ATP8	5491	chrM:8478:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	1	1	0.0675	FALSE	231	204	14	283	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KD_SOFT_TISSUE	1	1	0.0675	FALSE	499	1288	110	792	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KD_SOFT_TISSUE	1	1	0.0675	FALSE	499	1288	110	792	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KD_SOFT_TISSUE	1	1	0.0675	FALSE	369	2501	205	193	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KD_SOFT_TISSUE	1	1	0.0675	FALSE	369	2501	205	193	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND6--MT-TE	3	3	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0.0506	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KD_SOFT_TISSUE	1	1	0.1012	FALSE	499	1288	110	792	0	FALSE	ACH-001099
KD_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0506	0.0337	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KD_SOFT_TISSUE	0.71	1	0.0843	FALSE	275	511	55	178	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND5--MT-ATP8	3	1	MT-ND5	1628	chrM:12964:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	10686	0	0	1	0.0506	0.0169	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	0	1	0.0675	FALSE	42	36	7	104	0	FALSE	ACH-001099
KD_SOFT_TISSUE	CTDSP1--DNM3OS	3	0	CTDSP1	5150	chr2:219267128:+	DNM3OS	12044	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0506	0	GTEx_FI:{Blood_Vessel=[count:34=pct:9.2],Ovary=[count:11=pct:20.8],Colon=[count:9=pct:4.7],Esophagus=[count:5=pct:1.2],Adipose_Tissue=[count:4=pct:1.3],Breast=[count:4=pct:3.6],Thyroid=[count:4=pct:2.3],Spleen=[count:3=pct:2.7],Lung=[count:3=pct:1.8],Vagina=[count:2=pct:3.6],Uterus=[count:2=pct:4.7],Skin=[count:2=pct:0.6],Prostate=[count:2=pct:3.3],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Testis=[count:1=pct:1.0]},CTDSP1->CTD_small_phosphatase_1,chr2:219262979-219270664:+,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	KD_SOFT_TISSUE	1	1	0.0506	TRUE	71	70	15	9	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1122	chrM:8648:+	MT-RNR2	5410	chrM:2399:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KD_SOFT_TISSUE	1	1	0.0506	FALSE	63	17	1	58	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	1	1	0.0506	FALSE	230	198	14	283	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	1	1	0.0506	FALSE	231	204	14	283	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KD_SOFT_TISSUE	1	1	0.0506	FALSE	231	217	16	283	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KD_SOFT_TISSUE	1	1	0.0506	FALSE	499	1288	110	792	0	FALSE	ACH-001099
KD_SOFT_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KD_SOFT_TISSUE	1	1	0.0506	FALSE	462	80	0	856	0	FALSE	ACH-001099
KD_SOFT_TISSUE	NSRP1--DNM3OS	3	0	NSRP1	2321	chr17:28443881:+	DNM3OS	22440	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0506	0	NSRP1->chr17:28442539-28513493:+,nuclear_speckle_splicing_regulatory_protein_1,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	KD_SOFT_TISSUE	1	1	0.0506	TRUE	0	0	0	1	0	TRUE	ACH-001099
KD_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	2	0.67	0.67	0.0337	0.0337	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KD_SOFT_TISSUE	0.67	0.67	0.0674	FALSE	407	2205	196	549	0	FALSE	ACH-001099
KD_SOFT_TISSUE	RP4-565E6.1--HYDIN	2	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0.0337	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	KD_SOFT_TISSUE	1	1	0.0674	TRUE	456	1387	91	133	0	FALSE	ACH-001099
KD_SOFT_TISSUE	ARHGAP12--ZEB1	2	0	ARHGAP12	20269	chr10:32097577:-	ZEB1	38666	chr10:31749966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	ARHGAP12->Rho_GTPase_activating_protein_12,chr10:32094365-32217742:-,ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1	KD_SOFT_TISSUE	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-001099
KD_SOFT_TISSUE	FAM114A1--DNM3OS	2	0	FAM114A1	1158	chr4:38869455:+	DNM3OS	22533	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	FAM114A1->chr4:38869298-38947360:+,family_with_sequence_similarity_114_member_A1,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	KD_SOFT_TISSUE	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-001099
KD_SOFT_TISSUE	IL4R--NSMCE1	2	0	IL4R	1353	chr16:27325341:+	NSMCE1	31038	chr16:27246620:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	LOCAL_INVERSION:+:-:[44874],IL4R->Oncogene{Bushman},chr16:27324989-27376099:+,interleukin_4_receptor,NSMCE1->NSE1_homolog,_SMC5-SMC6_complex_component,chr16:27236312-27280115:-	KD_SOFT_TISSUE	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-001099
KD_SOFT_TISSUE	RP1-34H18.1--RP11-781A6.1	2	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	KD_SOFT_TISSUE	1	1	0.0337	TRUE	94	160	11	37	0	FALSE	ACH-001099
KD_SOFT_TISSUE	RP11-114H23.1--RP11-114H23.2	2	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	KD_SOFT_TISSUE	1	1	0.0337	FALSE	81	155	12	160	0	FALSE	ACH-001099
KD_SOFT_TISSUE	RP11-123O10.4--GRIP1	1	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0.0675	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KD_SOFT_TISSUE	1	1	0.0844	FALSE	93	270	15	244	0	FALSE	ACH-001099
KD_SOFT_TISSUE	RP11-333E1.1--INPP5B	2	0	RP11-333E1.1	1080	chr17:5095458:+	INPP5B	37979	chr1:38334286:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	RP11-333E1.1->chr17:5095379-5151364:+,INPP5B->chr1:38326369-38412729:-,inositol_polyphosphate-5-phosphatase_B	KD_SOFT_TISSUE	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-001099
KD_SOFT_TISSUE	MAN1A2--CHMP1A	1	2	MAN1A2	6590	chr1:117963271:+	CHMP1A	31445	chr16:89713739:-	ONLY_REF_SPLICE	NO	91	243	0.03	0.01	0.0169	0.0337	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Left_Ventricle=1},MAN1A2->chr1:117910071-118071494:+,mannosidase_alpha_class_1A_member_2,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	KD_SOFT_TISSUE	0.01	0.03	0.0506	FALSE	0	2	0	1	0	FALSE	ACH-001099
KD_SOFT_TISSUE	COL3A1--PXDN	1	1	COL3A1	22968	chr2:189870985:+	PXDN	50114	chr2:1664809:-	ONLY_REF_SPLICE	NO	1926	1422	0	0	0.0169	0.0169	COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,PXDN->chr2:1635659-1748624:-,peroxidasin	KD_SOFT_TISSUE	0	0	0.0338	FALSE	0	0	0	1	0	FALSE	ACH-001099
KD_SOFT_TISSUE	FRMD4A--CDNF	1	1	FRMD4A	4125	chr10:14372057:-	CDNF	52127	chr10:14862157:-	ONLY_REF_SPLICE	YES	16	8	0.11	0.2	0.0169	0.0169	FRMD4A->FERM_domain_containing_4A,chr10:13685706-14504141:-,CDNF->cerebral_dopamine_neurotrophic_factor,chr10:14861249-14880574:-	KD_SOFT_TISSUE	0.11	0.2	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-001099
KD_SOFT_TISSUE	PBX3--MAPKAP1	1	1	PBX3	2279	chr9:128510902:+	MAPKAP1	31403	chr9:128348006:-	ONLY_REF_SPLICE	YES	220	328	0.01	0.01	0.0169	0.0169	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	KD_SOFT_TISSUE	0.01	0.01	0.0338	FALSE	0	2	0	5	0	FALSE	ACH-001099
KD_SOFT_TISSUE	RCC1--CCNI	1	1	RCC1	2916	chr1:28835413:+	CCNI	25937	chr4:77976533:-	ONLY_REF_SPLICE	YES	92	343	0.02	0.01	0.0169	0.0169	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CCNI->chr4:77968311-77997158:-,cyclin_I	KD_SOFT_TISSUE	0.01	0.02	0.0338	FALSE	0	0	0	1	0	FALSE	ACH-001099
KD_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	4	0.5	0.33	0.0169	0.0169	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KD_SOFT_TISSUE	0.33	0.5	0.0338	FALSE	515	4851	409	746	0	FALSE	ACH-001099
KD_SOFT_TISSUE	SLC35E3--NUP107	1	1	SLC35E3	1674	chr12:69140559:+	NUP107	28063	chr12:69109407:+	ONLY_REF_SPLICE	YES	65	104	0.03	0.02	0.0169	0.0169	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[3101],SLC35E3->chr12:69139886-69187508:+,solute_carrier_family_35_member_E3,NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa	KD_SOFT_TISSUE	0.02	0.03	0.0338	TRUE	0	0	0	3	0	FALSE	ACH-001099
KD_SOFT_TISSUE	SMEK2--CHMP1A	1	1	SMEK2	21408	chr2:55785911:-	CHMP1A	32901	chr16:89713739:-	ONLY_REF_SPLICE	YES	120	243	0.02	0.01	0.0169	0.0169	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},{Klijn_CCL:Brain=1},SMEK2->chr2:55774428-55846015:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	KD_SOFT_TISSUE	0.01	0.02	0.0338	FALSE	0	0	0	1	0	FALSE	ACH-001099
KD_SOFT_TISSUE	SNCA--GPRIN3	1	1	SNCA	5931	chr4:90743397:-	GPRIN3	16329	chr4:90171384:-	ONLY_REF_SPLICE	NO	609	150	0	0.01	0.0169	0.0169	SNCA->chr4:90645250-90759466:-,synuclein_alpha,GPRIN3->GPRIN_family_member_3,chr4:90157537-90229161:-	KD_SOFT_TISSUE	0	0.01	0.0338	FALSE	0	0	0	1	0	FALSE	ACH-001099
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	2642	322	MT-ND4	1180	chrM:10939:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	52	0	0.98	1	30.5233	3.7201	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.98	1	34.2434	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	547	356	MT-ND4	2335	chrM:12094:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	1	0	1	1	6.3195	4.1129	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	10.4324	FALSE	263	700	35	281	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	201	23	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.3222	0.2657	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	2.5879	FALSE	462	80	0	856	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	145	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6752	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	1.6752	FALSE	369	2501	205	193	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	53	317	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	47	1	0.89	1	0.6123	3.6623	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.89	1	4.2746	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	65	234	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	17565	1	0.02	1	0.751	2.7034	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.02	1	3.4544	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	16	347	MT-ND4	1843	chrM:11602:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	25637	0	0.01	1	0.1848	4.0089	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.01	1	4.1937	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	96	8	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	NO	165	301	0.39	0.26	1.1091	0.0924	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.26	0.39	1.2015	FALSE	92	22	4	61	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	13	328	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	88	0	0.79	1	0.1502	3.7894	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.79	1	3.9396	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	320	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	32	0	0.91	1	0.1733	3.697	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.91	1	3.8703	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	353	MT-ND4	1960	chrM:11719:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	NO	38042	0	0.01	1	0.0347	4.0782	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.01	1	4.1129	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	323	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	52	0	0.86	1	0.0924	3.7316	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.86	1	3.824	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	340	MT-ND4	1519	chrM:11278:+	MT-ND4L	5394	chrM:10485:+	INCL_NON_REF_SPLICE	YES	1979	0	0.15	1	0.0347	3.9281	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.15	1	3.9628	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	337	MT-ND4	1754	chrM:11513:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	YES	14380	1	0.02	1	0.0347	3.8934	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.02	1	3.9281	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	326	MT-ND4	1299	chrM:11058:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	YES	192	1	0.63	1	0.0578	3.7663	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.63	1	3.8241	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	332	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	1582	1	0.17	1	0.0347	3.8356	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.17	1	3.8703	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	324	MT-ND4	1201	chrM:10960:+	MT-ND4L	5475	chrM:10566:+	INCL_NON_REF_SPLICE	YES	63	0	0.84	1	0.0462	3.7432	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.84	1	3.7894	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	327	MT-ND4	1285	chrM:11044:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	184	1	0.64	1	0.0347	3.7779	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.64	1	3.8126	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	322	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	90	1	0.78	1	0.0462	3.7201	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.78	1	3.7663	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	322	MT-ND4	1170	chrM:10929:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	42	0	0.89	1	0.0462	3.7201	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.89	1	3.7663	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	324	MT-ND4	1205	chrM:10964:+	MT-ND4L	5494	chrM:10585:+	INCL_NON_REF_SPLICE	YES	71	0	0.82	1	0.0347	3.7432	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.82	1	3.7779	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	320	MT-ND4	1220	chrM:10979:+	MT-ND4L	5536	chrM:10627:+	INCL_NON_REF_SPLICE	YES	90	0	0.78	1	0.0462	3.697	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.78	1	3.7432	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	323	MT-ND4	1213	chrM:10972:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	YES	85	1	0.79	1	0.0347	3.7316	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.79	1	3.7663	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	322	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	47	0	0.87	1	0.0347	3.7201	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.87	1	3.7548	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	315	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	29	1	0.92	1	0.0462	3.6392	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.92	1	3.6854	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	318	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	32	1	0.91	1	0.0347	3.6739	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.91	1	3.7086	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	313	MT-ND4	1110	chrM:10869:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	28	1	0.92	1	0.0347	3.6161	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.92	1	3.6508	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	311	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	28	1	0.92	1	0.0347	3.593	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.92	1	3.6277	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	42	150	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4852	1.733	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	2.2182	FALSE	369	2501	205	193	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	17	249	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	15	1	0.95	1	0.1964	2.8767	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.95	1	3.0731	FALSE	344	821	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	58	64	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	29510	1	0	0.99	0.6701	0.7394	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	0.99	1.4095	FALSE	328	800	43	304	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	280	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	16	1	0.95	1	0.0462	3.2349	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.95	1	3.2811	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	267	MT-ND4	1789	chrM:11548:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	18083	0	0.01	1	0.0462	3.0847	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.01	1	3.1309	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	41	107	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4737	1.2362	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	1.7099	FALSE	369	2501	205	193	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	243	MT-ND4	1475	chrM:11234:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	1169	0	0.17	1	0.0347	2.8074	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.17	1	2.8421	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	211	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	207	1	0.51	1	0.0924	2.4377	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.51	1	2.5301	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	211	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	192	1	0.53	1	0.0578	2.4377	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.53	1	2.4955	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	217	MT-ND4	1062	chrM:10821:+	MT-ND4L	5516	chrM:10607:+	INCL_NON_REF_SPLICE	YES	12	1	0.95	1	0.0347	2.507	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.95	1	2.5417	FALSE	344	821	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	53	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.6123	0.1848	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.99	1	0.7971	TRUE	508	994	45	981	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	203	MT-ND4	1131	chrM:10890:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	31	1	0.87	1	0.0462	2.3453	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.87	1	2.3915	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	199	MT-ND4	1058	chrM:10817:+	MT-ND4L	5526	chrM:10617:+	INCL_NON_REF_SPLICE	YES	11	1	0.95	1	0.0462	2.2991	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.95	1	2.3453	FALSE	344	821	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	45	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.5199	0.0347	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.98	1	0.5546	FALSE	499	1288	110	792	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	37	29	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4275	0.335	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.7625	FALSE	369	2501	205	193	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	158	MT-ND4	1314	chrM:11073:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	214	1	0.43	0.99	0.0462	1.8254	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.43	0.99	1.8716	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	33	38	MT-ND4	1903	chrM:11662:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	37027	0	0	1	0.3813	0.439	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	1	0.8203	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	31	33	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	84	0	0.43	1	0.3581	0.3813	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.43	1	0.7394	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	20	75	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2311	0.8665	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	1.0976	FALSE	369	2501	205	193	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	133	MT-TA	1054	chrM:5602:-	MT-TN	3986	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0347	1.5366	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	1.5713	FALSE	369	2501	205	193	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	30	18	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	19	21	0.72	0.7	0.3466	0.208	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.7	0.72	0.5546	TRUE	181	1564	124	196	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	28	24	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.91	1	0.3235	0.2773	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.91	1	0.6008	FALSE	499	1288	110	792	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	29	20	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.335	0.2311	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.5661	FALSE	462	80	0	856	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	33	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	167	10	0.17	0.78	0.3813	0.0231	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.17	0.78	0.4044	TRUE	519	3926	326	965	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	33	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3813	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.3813	FALSE	499	1288	110	792	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	117	MT-ND4	1039	chrM:10798:+	MT-ND4L	5496	chrM:10587:+	INCL_NON_REF_SPLICE	YES	9	0	0.93	1	0.0347	1.3517	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.93	1	1.3864	FALSE	344	821	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	101	MT-ND4	1779	chrM:11538:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	17254	1	0.01	0.99	0.0693	1.1669	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.01	0.99	1.2362	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	16	52	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1848	0.6008	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.7856	FALSE	369	2501	205	193	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	94	MT-ND4	1269	chrM:11028:+	MT-ND4L	5644	chrM:10735:+	INCL_NON_REF_SPLICE	YES	172	1	0.36	0.99	0.0462	1.086	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.36	0.99	1.1322	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	89	MT-ND4	1180	chrM:10939:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	YES	52	1	0.64	0.99	0.0578	1.0282	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.64	0.99	1.086	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	95	MT-ND4	1436	chrM:11195:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	YES	780	1	0.11	0.99	0.0347	1.0975	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.11	0.99	1.1322	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	18	35	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2266	0	0.02	1	0.208	0.4044	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.02	1	0.6124	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-494M8.4--OVCH2	23	14	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.2657	0.1617	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.97	1	0.4274	FALSE	32	0	0	22	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	11	59	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1979	1	0.03	0.99	0.1271	0.6816	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.03	0.99	0.8087	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	9	66	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.104	0.7625	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.8665	FALSE	369	2501	205	193	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	6	76	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0693	0.878	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.9473	FALSE	369	2501	205	193	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	ZNF654--HMGB2	25	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2888	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.2888	TRUE	0	0	0	518	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	24	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2773	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.2773	FALSE	369	2501	205	193	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	22	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2542	0.0924	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.3466	FALSE	416	2512	207	587	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	53	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	37	1	0.63	0.98	0.1155	0.6123	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.63	0.98	0.7278	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	23	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2657	0.0116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.2773	FALSE	462	80	0	856	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	36	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	17254	0	0	1	0.1617	0.4159	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	1	0.5776	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	17	22	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1964	0.2542	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.97	1	0.4506	FALSE	499	1288	110	792	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	72	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	5	1	0.94	0.99	0.0347	0.8318	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.94	0.99	0.8665	FALSE	344	821	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	54	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	11	1	0.85	0.98	0.0809	0.6239	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.85	0.98	0.7048	FALSE	344	821	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	62	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	16458	1	0	0.99	0.0578	0.7163	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	0.99	0.7741	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	17	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	189	0	0.14	1	0.1964	0.1502	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.14	1	0.3466	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	18	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.208	0.0578	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.2658	FALSE	499	1288	110	792	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	54	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	49	1	0.54	0.98	0.0462	0.6239	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.54	0.98	0.6701	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	11	24	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	47	0	0.43	1	0.1271	0.2773	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.43	1	0.4044	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	56	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	172	1	0.26	0.98	0.0347	0.647	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.26	0.98	0.6817	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	51	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0.5892	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.6354	FALSE	499	1288	110	792	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	16	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1848	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.1848	FALSE	369	2501	205	193	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	7	35	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	6	0	0.88	1	0.0809	0.4044	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.4853	FALSE	499	1288	110	792	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	38	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	32889	0	0	1	0.0693	0.439	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	1	0.5083	FALSE	343	822	44	305	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	34	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	175	0	0.19	1	0.0809	0.3928	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.19	1	0.4737	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	49	MT-ND4	1276	chrM:11035:+	MT-ND4L	5657	chrM:10748:+	INCL_NON_REF_SPLICE	YES	171	0	0.23	1	0.0347	0.5661	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.23	1	0.6008	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	49	0	0.34	1	0.1386	0.1502	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.34	1	0.2888	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	13	8	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1502	0.0924	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.2426	FALSE	344	821	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	35	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1245	0	0.03	1	0.0693	0.4044	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.03	1	0.4737	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	8	25	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0924	0.2888	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.3812	FALSE	462	80	0	856	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-TL1	3	41	MT-ND1	1155	chrM:3461:+	MT-TL1	4983	chrM:3256:+	INCL_NON_REF_SPLICE	YES	22	0	0.67	1	0.0347	0.4737	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.67	1	0.5084	FALSE	210	95	5	49	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	32	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	37	0	0.5	1	0.0578	0.3697	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.5	1	0.4275	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	11	7	MT-ND1	1207	chrM:3513:+	MT-RNR2	5683	chrM:2397:+	INCL_NON_REF_SPLICE	NO	17	21708	0.51	0	0.1271	0.0809	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	0.51	0.208	FALSE	120	26	5	87	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	31	MT-ND4	1278	chrM:11037:+	MT-ND4L	5663	chrM:10754:+	INCL_NON_REF_SPLICE	NO	172	0	0.17	1	0.0578	0.3581	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.17	1	0.4159	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-494M8.4--OVCH2	12	3	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	10	0	0.6	1	0.1386	0.0347	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.6	1	0.1733	FALSE	60	13	8	23	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	11	6	MT-ND1	1086	chrM:3392:+	MT-RNR2	5099	chrM:1813:+	INCL_NON_REF_SPLICE	NO	2	7511	0.89	0	0.1271	0.0693	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	0.89	0.1964	FALSE	114	26	4	85	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	33	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	75	0	0.33	1	0.0462	0.3813	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.33	1	0.4275	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	35	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	6	0	0.86	1	0.0347	0.4044	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.86	1	0.4391	FALSE	499	1288	110	792	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	VPS13B--RP11-770G2.2	10	7	VPS13B	14529	chr8:100160238:+	RP11-770G2.2	81459	chr11:65538746:+	INCL_NON_REF_SPLICE	YES	7	0	0.71	1	0.1155	0.0809	VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast),RP11-770G2.2->chr11:65513200-65539056:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.71	1	0.1964	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	7	18	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	162	0	0.13	1	0.0809	0.208	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.13	1	0.2889	FALSE	114	26	4	85	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	34	MT-ND4	1248	chrM:11007:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	138	0	0.21	1	0.0347	0.3928	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.21	1	0.4275	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	34	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	46	0	0.45	1	0.0347	0.3928	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.45	1	0.4275	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	26	MT-ND4	1192	chrM:10951:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	47	0	0.4	1	0.0578	0.3004	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.3582	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	11	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1271	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.1271	FALSE	499	1288	110	792	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	11	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1271	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.1271	FALSE	369	2501	205	193	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	10	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	20	23	0.39	0.36	0.1155	0.0347	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.36	0.39	0.1502	TRUE	267	562	48	632	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	5	22	MT-ND1	1485	chrM:3791:+	MT-RNR2	4979	chrM:1693:+	INCL_NON_REF_SPLICE	YES	217	0	0.11	1	0.0578	0.2542	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.312	FALSE	114	26	4	85	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	8	9	MT-ND1	1297	chrM:3603:+	MT-RNR2	5502	chrM:2216:+	INCL_NON_REF_SPLICE	YES	184	18986	0.08	0	0.0924	0.104	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	0.08	0.1964	FALSE	120	26	5	87	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-494M8.4--OVCH2	5	21	RP11-494M8.4	10901	chr11:7775931:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0.2426	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.3004	FALSE	16	1	1	11	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-CO3	5	17	MT-ND5	2647	chrM:13983:+	MT-CO3	5951	chrM:9345:+	INCL_NON_REF_SPLICE	YES	3230	8427	0.01	0	0.0578	0.1964	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.2542	FALSE	0	15	2	18	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	21	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0.2426	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.2888	FALSE	462	80	0	856	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	24	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	5	0	0.84	1	0.0347	0.2773	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.84	1	0.312	FALSE	499	1288	110	792	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	9	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.104	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.104	FALSE	369	2501	205	193	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	4	18	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	160	0	0.12	1	0.0462	0.208	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.12	1	0.2542	FALSE	114	26	4	85	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-494M8.4--OVCH2	4	18	RP11-494M8.4	8241	chr11:7873820:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0.208	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.2542	FALSE	1	0	0	7	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	21	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0.2426	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.2773	FALSE	462	80	0	856	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	HSPBP1--GRK5	8	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0924	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0924	TRUE	1	39	0	134	39	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	6	7	MT-ND1	1272	chrM:3578:+	MT-RNR2	5546	chrM:2260:+	INCL_NON_REF_SPLICE	YES	168	18836	0.07	0	0.0693	0.0809	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	0.07	0.1502	FALSE	120	26	5	87	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	5	11	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0.1271	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.1849	FALSE	462	80	0	856	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	13	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	18	0	0.49	1	0.0462	0.1502	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.49	1	0.1964	FALSE	344	826	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	189	0	0.08	1	0.0462	0.1502	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.08	1	0.1964	FALSE	344	827	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0809	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0809	FALSE	344	821	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0809	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0809	FALSE	344	821	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--MID1	6	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	15	1	0.4	0.0693	0.0462	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.1155	FALSE	16	356	14	466	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	6	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.0693	0.0347	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.75	1	0.104	FALSE	292	1546	117	613	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	2	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	12	1	0.4	0.89	0.0693	0.0231	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.4	0.89	0.0924	FALSE	344	821	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	6	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	25	1	0.24	0.0693	0.0231	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.24	1	0.0924	TRUE	465	1949	224	605	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	9	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0.104	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.1502	FALSE	462	80	0	856	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	3	12	MT-ND1	1717	chrM:4023:+	MT-RNR2	6113	chrM:2827:+	INCL_NON_REF_SPLICE	YES	1384	354	0.01	0.04	0.0347	0.1386	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.01	0.04	0.1733	FALSE	92	22	4	61	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-TL1	6	0	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0693	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0693	FALSE	210	95	5	49	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	8	MT-ND4	1003	chrM:10762:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.92	0.0462	0.0924	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.92	1	0.1386	FALSE	344	821	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	6	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0693	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0693	FALSE	369	2501	205	193	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	6	0	MT-TA	1067	chrM:5589:-	MT-TN	4133	chrM:5666:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0693	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0693	FALSE	369	2501	205	193	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-CO3	4	7	MT-ND5	2607	chrM:13943:+	MT-CO3	6185	chrM:9579:+	INCL_NON_REF_SPLICE	YES	4648	23425	0	0	0.0462	0.0809	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	0	0.1271	FALSE	0	15	2	18	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	5	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	13	1	0.35	0.0578	0.0231	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.35	1	0.0809	TRUE	458	1351	185	561	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0578	0.0231	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.0809	FALSE	407	2205	196	549	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	0	MT-ND4	1056	chrM:10815:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0578	FALSE	344	821	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0578	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0578	FALSE	499	1288	110	792	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	3	7	MT-ND1	1255	chrM:3561:+	MT-RNR2	5534	chrM:2248:+	INCL_NON_REF_SPLICE	YES	157	18329	0.06	0	0.0347	0.0809	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	0.06	0.1156	FALSE	120	26	5	87	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND1--MT-RNR2	3	7	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	160	18437	0.06	0	0.0347	0.0809	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	0.06	0.1156	FALSE	120	26	5	87	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	3	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.36	1	0.0347	0.0578	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.36	1	0.0925	FALSE	125	705	46	456	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1014	chrM:14660:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0462	FALSE	499	1288	110	792	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0462	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0462	FALSE	369	2501	205	193	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	3	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	19	24	0.24	0.2	0.0347	0.0347	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.2	0.24	0.0694	TRUE	267	562	48	632	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	VPS13B--RP11-770G2.2	2	7	VPS13B	14529	chr8:100160238:+	RP11-770G2.2	81376	chr11:65538663:+	ONLY_REF_SPLICE	YES	7	0	0.56	1	0.0231	0.0809	VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast),RP11-770G2.2->chr11:65513200-65539056:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.56	1	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	2	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.3	1	0.0231	0.0578	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.3	1	0.0809	FALSE	164	806	69	479	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-108K3.1--GLDN	3	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0.0116	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0463	FALSE	1	20	0	46	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1019	chrM:10778:+	MT-ND4L	5617	chrM:10708:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0347	FALSE	344	821	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0347	FALSE	344	821	44	306	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0347	FALSE	499	1288	110	792	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-108K3.1--GLDN	2	2	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0.0231	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0462	FALSE	0	19	0	46	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.8	0.8	0.0231	0.0231	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.8	0.8	0.0462	FALSE	515	4851	409	746	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0.0116	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0347	FALSE	93	270	15	244	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	52	1	0.05	0.0231	0.0116	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.05	1	0.0347	TRUE	64	13	3	59	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	AGAP1--TRPC1	2	0	AGAP1	14318	chr2:236715975:+	TRPC1	41555	chr3:142455221:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,TRPC1->chr3:142442916-142526730:+,transient_receptor_potential_cation_channel_subfamily_C_member_1	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	347	1186	183	220	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	EIF4A3--ARHGAP32	2	0	EIF4A3	3531	chr17:78115581:-	ARHGAP32	17868	chr11:128993425:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	EIF4A3->chr17:78109013-78120982:-,eukaryotic_translation_initiation_factor_4A3,ARHGAP32->Rho_GTPase_activating_protein_32,chr11:128834955-129149219:-	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	HNRNPA2B1--MAP4K5	2	0	HNRNPA2B1	9018	chr7:26232115:-	MAP4K5	32681	chr14:50915550:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,MAP4K5->chr14:50885219-51027844:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_5	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	2	0	KANSL1	7536	chr17:44248221:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	16	5	0	9	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	MECOM--PET112	2	0	MECOM	1283	chr3:169381124:-	PET112	52495	chr4:152609915:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,PET112->chr4:152591656-152682175:-	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	PIGU--SLC39A9	2	0	PIGU	1151	chr20:33264760:-	SLC39A9	26647	chr14:69919958:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,SLC39A9->chr14:69864732-69929105:+,solute_carrier_family_39_member_9	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	SDCBP--GSR	2	0	SDCBP	4943	chr8:59477625:+	GSR	19380	chr8:30569605:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein,GSR->chr8:30535583-30585443:-,glutathione_reductase	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	STARD13--XRN2	2	0	STARD13	4237	chr13:33859607:-	XRN2	53150	chr20:21362632:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-,XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	TRA2B--VPS8	2	0	TRA2B	1312	chr3:185655613:-	VPS8	80519	chr3:184742124:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	2	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	ZC3H18--CNPPD1	2	0	ZC3H18	20370	chr16:88697747:+	CNPPD1	25257	chr2:220041569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	ZC3H18->chr16:88636789-88698374:+,zinc_finger_CCCH-type_containing_18,CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0116	0.0347	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0463	FALSE	192	492	57	212	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0116	0.0347	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.0463	FALSE	275	511	55	178	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0116	0.0231	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.75	1	0.0347	FALSE	467	2173	244	435	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	DFNA5--HDLBP	1	1	DFNA5	16335	chr7:24747746:-	HDLBP	50285	chr2:242182093:-	ONLY_REF_SPLICE	YES	112	398	0.02	0.01	0.0116	0.0116	DFNA5->DFNA5,_deafness_associated_tumor_suppressor,chr7:24737972-24809244:-,HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	LAMB3--RP1-28O10.1	1	1	LAMB3	12310	chr1:209800212:-	RP1-28O10.1	25983	chr1:209836406:-	ONLY_REF_SPLICE	NO	1401	0	0	1	0.0116	0.0116	LOCAL_REARRANGEMENT:-:[8898],LAMB3->chr1:209788215-209825811:-,laminin_subunit_beta_3,RP1-28O10.1->chr1:209834709-209897470:-	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	1	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	LAMB3--RP1-28O10.1	1	1	LAMB3	11794	chr1:209800728:-	RP1-28O10.1	25983	chr1:209836406:-	ONLY_REF_SPLICE	YES	1426	0	0	1	0.0116	0.0116	LOCAL_REARRANGEMENT:-:[8898],LAMB3->chr1:209788215-209825811:-,laminin_subunit_beta_3,RP1-28O10.1->chr1:209834709-209897470:-	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	1	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	14	5	0.12	0.29	0.0116	0.0116	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.12	0.29	0.0232	FALSE	7	44	2	41	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	PARVA--HSP90AB1	1	1	PARVA	5249	chr11:12495530:+	HSP90AB1	26612	chr6:44216367:+	ONLY_REF_SPLICE	YES	111	60	0.02	0.03	0.0116	0.0116	PARVA->chr11:12398732-12552348:+,parvin_alpha,HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.02	0.03	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	RP11-108K3.1--GLDN	1	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0116	0.0116	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0232	FALSE	1	20	0	46	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	TMEM123--BIRC2	1	1	TMEM123	5695	chr11:102319543:-	BIRC2	22451	chr11:102248227:+	ONLY_REF_SPLICE	NO	2518	983	0	0	0.0116	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},{Klijn_CCL:Brain=1},LOCAL_INVERSION:-:+:[17662],TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	0	0.0232	FALSE	1	3	0	8	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	TMEM123--BIRC2	1	1	TMEM123	5695	chr11:102319543:-	BIRC2	18133	chr11:102221575:+	ONLY_REF_SPLICE	YES	2518	928	0	0	0.0116	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},{Klijn_CCL:Brain=1},LOCAL_INVERSION:-:+:[17662],TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	0	0.0232	FALSE	0	0	0	2	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	TMEM123--YAP1	1	1	TMEM123	5695	chr11:102319543:-	YAP1	18692	chr11:102033187:+	ONLY_REF_SPLICE	YES	2518	1466	0	0	0.0116	0.0116	{Klijn_CCL:Head-Neck=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0	0	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000732
PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	ZNF431--CMA1	1	1	ZNF431	2256	chr19:21326446:+	CMA1	18717	chr14:24975488:-	ONLY_REF_SPLICE	YES	15	0	0.12	1	0.0116	0.0116	ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431,CMA1->chr14:24974559-24977471:-,chymase_1	PECAPJ41CLONED2_UPPER_AERODIGESTIVE_TRACT	0.12	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000732
KNS60_CENTRAL_NERVOUS_SYSTEM	YBX3--KLRC3	190	115	YBX3	16019	chr12:10853853:-	KLRC3	26028	chr12:10565215:-	ONLY_REF_SPLICE	YES	227	0	0.57	1	2.4032	1.4546	YBX3->Y-box_binding_protein_3,chr12:10851683-10875911:-,KLRC3->chr12:10564911-10573194:-,killer_cell_lectin_like_receptor_C3	KNS60_CENTRAL_NERVOUS_SYSTEM	0.57	1	3.8578	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	QKI--PARK2	108	41	QKI	2336	chr6:163836367:+	PARK2	42408	chr6:161807909:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.366	0.5186	GTEx_v2:{count=2;pct=0.02%;dist=Muscle_-_Skeletal=1,Esophagus_-_Muscularis=1},QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PARK2->ArcherDX_panel,FoundationOne_panel,chr6:161768452-163148803:-,parkin_RBR_E3_ubiquitin_protein_ligase	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	1.8846	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	PAIP2--SLC35E1	102	34	PAIP2	1394	chr5:138677669:+	SLC35E1	18307	chr19:16666208:-	ONLY_REF_SPLICE	YES	95	63	0.59	0.68	1.2902	0.4301	PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2,SLC35E1->chr19:16660642-16683193:-,solute_carrier_family_35_member_E1	KNS60_CENTRAL_NERVOUS_SYSTEM	0.59	0.68	1.7203	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	RP11-344E13.3--UBBP4	69	161	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	195	1	0.54	1	0.8728	2.0364	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	KNS60_CENTRAL_NERVOUS_SYSTEM	0.54	1	2.9092	TRUE	23	13	0	54	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	77	71	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	35	0	0.81	1	0.9739	0.898	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	KNS60_CENTRAL_NERVOUS_SYSTEM	0.81	1	1.8719	TRUE	0	48	0	65	48	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	GUSBP11--AC006946.15	61	55	GUSBP11	15899	chr22:24025912:-	AC006946.15	26169	chr22:17605545:+	ONLY_REF_SPLICE	YES	17	0	0.87	1	0.7716	0.6957	GUSBP11->chr22:23980674-24059543:-,glucuronidase,_beta_pseudogene_11,AC006946.15->chr22:17602476-17612994:+	KNS60_CENTRAL_NERVOUS_SYSTEM	0.87	1	1.4673	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	51	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6451	0.2783	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.9234	TRUE	508	994	45	981	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	14	77	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	35	0	0.72	1	0.1771	0.9739	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	KNS60_CENTRAL_NERVOUS_SYSTEM	0.72	1	1.151	TRUE	0	35	0	55	35	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	29	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	307	4	0.09	0.89	0.3668	0.0379	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KNS60_CENTRAL_NERVOUS_SYSTEM	0.09	0.89	0.4047	TRUE	519	3926	326	965	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	28	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3542	0.0506	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.4048	FALSE	462	80	0	856	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	UNC45A--TXNRD1	15	9	UNC45A	5884	chr15:91479690:+	TXNRD1	35742	chr12:104705068:+	ONLY_REF_SPLICE	YES	126	413	0.16	0.05	0.1897	0.1138	UNC45A->chr15:91473410-91497323:+,unc-45_myosin_chaperone_A,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	KNS60_CENTRAL_NERVOUS_SYSTEM	0.05	0.16	0.3035	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	12	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	75	59	0.19	0.23	0.1518	0.0759	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KNS60_CENTRAL_NERVOUS_SYSTEM	0.19	0.23	0.2277	TRUE	267	562	48	632	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	PAIP2--SLC35E1	5	34	PAIP2	1394	chr5:138677669:+	SLC35E1	16660	chr19:16667937:-	INCL_NON_REF_SPLICE	YES	95	59	0.29	0.4	0.0632	0.4301	PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2,SLC35E1->chr19:16660642-16683193:-,solute_carrier_family_35_member_E1	KNS60_CENTRAL_NERVOUS_SYSTEM	0.29	0.4	0.4933	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	CDH13--HSBP1	11	8	CDH13	22101	chr16:83520260:+	HSBP1	37137	chr16:83842285:+	ONLY_REF_SPLICE	YES	474	538	0.04	0.03	0.1391	0.1012	NEIGHBORS[11244],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,HSBP1->chr16:83841448-83853342:+,heat_shock_factor_binding_protein_1	KNS60_CENTRAL_NERVOUS_SYSTEM	0.03	0.04	0.2403	FALSE	0	3	0	1	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	ARMC7--SLC16A5	11	4	ARMC7	1655	chr17:73106701:+	SLC16A5	17066	chr17:73100065:+	ONLY_REF_SPLICE	YES	32	0	0.32	1	0.1391	0.0506	LOCAL_REARRANGEMENT:+:[3790],ARMC7->armadillo_repeat_containing_7,chr17:73106047-73126360:+,SLC16A5->chr17:73083822-73102257:+,solute_carrier_family_16_member_5	KNS60_CENTRAL_NERVOUS_SYSTEM	0.32	1	0.1897	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	10	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	19	1	0.41	0.1265	0.0379	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KNS60_CENTRAL_NERVOUS_SYSTEM	0.41	1	0.1644	TRUE	465	1949	224	605	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	CTD-2547E10.2--RNF130	9	2	CTD-2547E10.2	1617	chr16:21531149:-	RNF130	35433	chr5:179440311:-	ONLY_REF_SPLICE	YES	6	107	0.65	0.09	0.1138	0.0253	CTD-2547E10.2->chr16:21458004-21531765:-,RNF130->chr5:179338651-179499118:-,ring_finger_protein_130	KNS60_CENTRAL_NERVOUS_SYSTEM	0.09	0.65	0.1391	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	8	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	71	61	0.14	0.16	0.1012	0.0506	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KNS60_CENTRAL_NERVOUS_SYSTEM	0.14	0.16	0.1518	TRUE	267	562	48	632	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	8	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1012	0.0379	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.1391	FALSE	416	2512	207	587	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	7	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0885	0.0632	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KNS60_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.1517	TRUE	458	1351	185	561	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	RP11-319G9.5--WWOX	8	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1012	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.1012	FALSE	154	425	28	76	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	SLC39A11--RP11-84E24.3	8	0	SLC39A11	8636	chr17:71027695:-	RP11-84E24.3	30295	chr17:70033186:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1012	0	SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,RP11-84E24.3->chr17:70026432-70034889:+	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.1012	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	6	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0759	0.0506	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.1265	FALSE	462	80	0	856	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	SRP72--HGSNAT	4	6	SRP72	4075	chr4:57338009:+	HGSNAT	27397	chr8:43016581:+	ONLY_REF_SPLICE	YES	140	35	0.07	0.22	0.0506	0.0759	SRP72->chr4:57333081-57369839:+,signal_recognition_particle_72kDa,HGSNAT->chr8:42995556-43057998:+,heparan-alpha-glucosaminide_N-acetyltransferase	KNS60_CENTRAL_NERVOUS_SYSTEM	0.07	0.22	0.1265	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	STARD9--ULK4P2	5	2	STARD9	24522	chr15:42974773:+	ULK4P2	51285	chr15:30888863:+	ONLY_REF_SPLICE	YES	3	10	0.7	0.41	0.0632	0.0253	STARD9->StAR_related_lipid_transfer_domain_containing_9,chr15:42867857-43013179:+,ULK4P2->ULK4_pseudogene_2,chr15:30864941-30892918:+	KNS60_CENTRAL_NERVOUS_SYSTEM	0.41	0.7	0.0885	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	RP11-307P5.1--SASH1	4	5	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	3	1	0.75	0.0506	0.0632	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	KNS60_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.1138	TRUE	0	2	0	37	2	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	RPS6--B2M	5	1	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	4143	0	0	1	0.0632	0.0126	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	KNS60_CENTRAL_NERVOUS_SYSTEM	0	1	0.0758	FALSE	0	0	0	28	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	TRAPPC9--PTK2	5	0	TRAPPC9	9369	chr8:141407719:-	PTK2	111851	chr8:141716304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0632	0	TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	AC097374.2--AC128677.4	4	1	AC097374.2	1128	chr2:95612959:-	AC128677.4	19023	chr2:92222845:-	ONLY_REF_SPLICE	YES	5	0	0.5	1	0.0506	0.0126	AC097374.2->chr2:95533231-95613086:-,AC128677.4->chr2:92222172-92223026:-	KNS60_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	RP11-266K4.9--FAM66C	4	1	RP11-266K4.9	1585	chr12:8388595:+	FAM66C	19040	chr12:8368402:+	ONLY_REF_SPLICE	YES	8	0	0.38	1	0.0506	0.0126	GTEx_FI:{Brain=[count:45=pct:6.8],Esophagus=[count:2=pct:0.5],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Colon=[count:2=pct:1.0],Uterus=[count:1=pct:2.3],Pituitary=[count:1=pct:1.9],Testis=[count:1=pct:1.0]},LOCAL_REARRANGEMENT:+:[19264],RP11-266K4.9->chr12:8388011-8395160:+,FAM66C->chr12:8332805-8368747:+,family_with_sequence_similarity_66_member_C	KNS60_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.0632	TRUE	33	15	0	5	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	RP11-476K15.1--CTD-2015H3.2	4	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0506	0.0126	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	KNS60_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.0632	FALSE	0	46	0	73	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	NPAS1--CCDC9	3	3	NPAS1	6284	chr19:47539387:+	CCDC9	15598	chr19:47759780:+	ONLY_REF_SPLICE	YES	6	1	0.5	0.86	0.0379	0.0379	NPAS1->chr19:47523077-47549033:+,neuronal_PAS_domain_protein_1,CCDC9->chr19:47759237-47775210:+,coiled-coil_domain_containing_9	KNS60_CENTRAL_NERVOUS_SYSTEM	0.5	0.86	0.0758	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	ANKHD1--ZMAT2	3	2	ANKHD1	12419	chr5:139851880:+	ZMAT2	46930	chr5:140081591:+	ONLY_REF_SPLICE	YES	38	149	0.12	0.03	0.0379	0.0253	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,ZMAT2->chr5:140078265-140086248:+,zinc_finger_matrin-type_2	KNS60_CENTRAL_NERVOUS_SYSTEM	0.03	0.12	0.0632	TRUE	0	0	0	1	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2738	0	0	1	0.0379	0.0126	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KNS60_CENTRAL_NERVOUS_SYSTEM	0	1	0.0505	FALSE	13	9	0	364	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0379	0.0126	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0505	FALSE	515	4851	409	746	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	VIM-AS1--UBA1	3	1	VIM-AS1	1699	chr10:17271286:-	UBA1	11699	chrX:47053258:+	INCL_NON_REF_SPLICE	NO	4	27	0.5	0.13	0.0379	0.0126	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,UBA1->chrX:47050260-47074527:+,ubiquitin_like_modifier_activating_enzyme_1	KNS60_CENTRAL_NERVOUS_SYSTEM	0.13	0.5	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	AC027612.3--AP000345.1	3	0	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0379	0	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	TRUE	0	0	0	11	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	3	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0379	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	TRUE	0	16	0	53	13	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	GUSBP11--AC006946.15	1	8	GUSBP11	13591	chr22:24032419:-	AC006946.15	26169	chr22:17605545:+	ONLY_REF_SPLICE	NO	25	0	0.26	1	0.0126	0.1012	GUSBP11->chr22:23980674-24059543:-,glucuronidase,_beta_pseudogene_11,AC006946.15->chr22:17602476-17612994:+	KNS60_CENTRAL_NERVOUS_SYSTEM	0.26	1	0.1138	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	ARL15--NDUFS4	2	1	ARL15	1151	chr5:53606262:-	NDUFS4	15711	chr5:52899282:+	ONLY_REF_SPLICE	YES	67	443	0.04	0.01	0.0253	0.0126	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	KNS60_CENTRAL_NERVOUS_SYSTEM	0.01	0.04	0.0379	FALSE	0	1	0	3	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	BTBD8--HFM1	2	1	BTBD8	4929	chr1:92573558:+	HFM1	14660	chr1:91866666:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0253	0.0126	BTBD8->BTB_domain_containing_8,chr1:92545862-92613393:+,HFM1->HFM1,_ATP-dependent_DNA_helicase_homolog,chr1:91726323-91870426:-	KNS60_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	FGFR2--COL14A1	2	1	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	22	0	0.12	1	0.0253	0.0126	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	KNS60_CENTRAL_NERVOUS_SYSTEM	0.12	1	0.0379	TRUE	0	0	0	32	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	41	0.33	0.07	0.0253	0.0126	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KNS60_CENTRAL_NERVOUS_SYSTEM	0.07	0.33	0.0379	FALSE	16	356	14	466	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0253	0.0126	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KNS60_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.0379	TRUE	477	1352	189	275	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0.0126	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0379	FALSE	467	2173	244	435	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	TRAPPC9--PTK2	2	1	TRAPPC9	9369	chr8:141407719:-	PTK2	110739	chr8:141727808:-	ONLY_REF_SPLICE	YES	34	124	0.08	0.02	0.0253	0.0126	TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	KNS60_CENTRAL_NERVOUS_SYSTEM	0.02	0.08	0.0379	TRUE	0	0	0	1	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	2	0	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	11	0	26	8	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	CEP85--PICALM	2	0	CEP85	12669	chr1:26598562:+	PICALM	33320	chr11:85711822:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	CEP85->centrosomal_protein_85,chr1:26560691-26605299:+,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	CREBL2--EFHC1	2	0	CREBL2	3662	chr12:12788908:+	EFHC1	18686	chr6:52318893:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+,EFHC1->EF-hand_domain_containing_1,chr6:52285106-52387892:+	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	347	1186	183	220	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	DNAJC24--ELP4	2	0	DNAJC24	2020	chr11:31392406:+	ELP4	33979	chr11:31804941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	NEIGHBORS[77901],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	FALSE	0	1	0	2	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	GEMIN4--CENPI	2	0	GEMIN4	6910	chr17:650407:-	CENPI	28950	chrX:100401142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GEMIN4->chr17:647654-657239:-,gem_nuclear_organelle_associated_protein_4,CENPI->centromere_protein_I,chrX:100353178-100418670:+	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	GLUD1P3--VCL	2	0	GLUD1P3	1312	chr10:75490631:+	VCL	8593	chr10:75802841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GLUD1P3->chr10:75490320-75497069:+,glutamate_dehydrogenase_1_pseudogene_3,VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	3	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	LRRC34--ZNF639	2	0	LRRC34	5604	chr3:169521841:-	ZNF639	17621	chr3:179045349:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	LRRC34->chr3:169511216-169530774:-,leucine_rich_repeat_containing_34,ZNF639->chr3:179040779-179053323:+,zinc_finger_protein_639	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	PTPN12--PHTF2	2	0	PTPN12	13163	chr7:77230123:+	PHTF2	30144	chr7:77469538:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	TNFRSF9--AIMP1	2	0	TNFRSF9	4111	chr1:7997750:-	AIMP1	15743	chr4:107246142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	TNFRSF9->chr1:7979907-8000926:-,tumor_necrosis_factor_receptor_superfamily_member_9,AIMP1->aminoacyl_tRNA_synthetase_complex-interacting_multifunctional_protein_1,chr4:107236701-107270383:+	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	UNC45A--TXNRD1	1	4	UNC45A	5406	chr15:91479212:+	TXNRD1	35742	chr12:104705068:+	ONLY_REF_SPLICE	YES	186	413	0.03	0.01	0.0126	0.0506	UNC45A->chr15:91473410-91497323:+,unc-45_myosin_chaperone_A,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	KNS60_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0632	FALSE	0	0	0	1	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	9887	chr12:67020592:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0126	0.0379	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0505	FALSE	0	0	0	1	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	ARL15--NDUFS4	1	1	ARL15	4552	chr5:53450410:-	NDUFS4	19173	chr5:52954381:+	ONLY_REF_SPLICE	YES	151	376	0.01	0.01	0.0126	0.0126	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	KNS60_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	ARL15--NDUFS4	1	1	ARL15	5950	chr5:53409032:-	NDUFS4	18000	chr5:52942063:+	ONLY_REF_SPLICE	YES	170	526	0.01	0	0.0126	0.0126	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	KNS60_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0252	FALSE	5	61	2	9	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	ARL15--NDUFS4	1	1	ARL15	3492	chr5:53467614:-	NDUFS4	20412	chr5:52978948:+	ONLY_REF_SPLICE	YES	176	267	0.01	0.01	0.0126	0.0126	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	KNS60_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0252	FALSE	0	0	0	2	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	LRP12--RP11-731N10.1	1	1	LRP12	1206	chr8:105601047:-	RP11-731N10.1	23273	chr8:83777885:-	ONLY_REF_SPLICE	YES	19	0	0.1	1	0.0126	0.0126	LRP12->LDL_receptor_related_protein_12,chr8:105501459-105601252:-,RP11-731N10.1->chr8:83775014-83870931:-	KNS60_CENTRAL_NERVOUS_SYSTEM	0.1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	11	0	0.15	1	0.0126	0.0126	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KNS60_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.0252	FALSE	164	806	69	479	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0126	0.0126	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KNS60_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0252	FALSE	292	1546	117	613	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	PBX3--MAPKAP1	1	1	PBX3	2279	chr9:128510902:+	MAPKAP1	25785	chr9:128420078:-	ONLY_REF_SPLICE	YES	59	236	0.03	0.01	0.0126	0.0126	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	KNS60_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0252	FALSE	0	0	0	3	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0126	0.0126	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	FALSE	407	2205	196	549	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0126	0.0126	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KNS60_CENTRAL_NERVOUS_SYSTEM	1	1	0.0252	FALSE	192	492	57	212	0	FALSE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	SLC39A11--CTC-297N7.5	1	1	SLC39A11	18406	chr17:70732789:-	CTC-297N7.5	36930	chr17:10705716:+	ONLY_REF_SPLICE	YES	44	0	0.04	1	0.0126	0.0126	SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,CTC-297N7.5->chr17:10633094-10718481:+	KNS60_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000445
KNS60_CENTRAL_NERVOUS_SYSTEM	TBCA--AP3B1	1	1	TBCA	2304	chr5:77072029:-	AP3B1	14268	chr5:77563419:-	ONLY_REF_SPLICE	YES	226	117	0.01	0.02	0.0126	0.0126	TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	KNS60_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000445
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADNP2--NSF	232	35	ADNP2	3112	chr18:77875533:+	NSF	28882	chr17:44782125:+	ONLY_REF_SPLICE	YES	19	26	0.93	0.91	2.1923	0.3307	ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+,NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.93	2.523	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	124	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1718	0.1039	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2757	TRUE	508	994	45	981	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	79	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7465	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7465	FALSE	369	2501	205	193	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	78	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7371	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7371	TRUE	0	0	0	518	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	77	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	154	6	0.34	0.93	0.7276	0.0094	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.93	0.737	TRUE	519	3926	326	965	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	38	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	1	13	0.98	0.76	0.3591	0.0378	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.98	0.3969	TRUE	458	1351	185	561	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	35	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3307	0.0756	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4063	FALSE	462	80	0	856	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	33	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	1	108	0.97	0.24	0.3118	0.0189	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.97	0.3307	TRUE	465	1949	224	605	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	12	76	MT-TA	1059	chrM:5597:-	MT-TN	4015	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1134	0.7182	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8316	FALSE	369	2501	205	193	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	30	4	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2835	0.0378	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3213	FALSE	46	201	11	112	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	24	5	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1369	28	0.02	0.51	0.2268	0.0472	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.51	0.274	FALSE	43	37	8	105	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	23	7	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2173	0.0661	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2834	TRUE	13	49	2	38	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	23	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2352	0	0.01	1	0.2173	0.0094	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.2267	FALSE	13	9	0	364	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	21	9	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1984	0.085	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2834	FALSE	462	80	0	856	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	14	32	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1323	0.3024	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4347	FALSE	369	2501	205	193	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	5	59	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0472	0.5575	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6047	FALSE	369	2501	205	193	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	49	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	2	0	0.96	1	0.0567	0.463	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.5197	FALSE	189	492	56	216	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	43	MT-CO3	1642	chrM:9848:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	2	12	0.96	0.8	0.0567	0.4063	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.96	0.463	FALSE	189	492	56	216	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	16	3	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3763	75	0.01	0.2	0.1512	0.0283	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.2	0.1795	FALSE	43	37	8	105	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	46	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0.4347	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4725	FALSE	369	2501	205	193	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	15	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1417	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1417	FALSE	369	2501	205	193	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	11	16	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1039	0.1512	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2551	FALSE	369	2501	205	193	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	35	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	0	16	1	0.72	0.0567	0.3307	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	1	0.3874	FALSE	189	492	56	216	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	14	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2377	0	0.01	1	0.1323	0.0094	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1417	FALSE	13	9	0	364	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	12	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1134	0.0661	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1795	FALSE	499	1288	110	792	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	34	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.0472	0.3213	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.3685	FALSE	189	492	56	216	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	39	MT-CO3	1434	chrM:9640:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	5	2	0.89	0.95	0.0283	0.3685	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.95	0.3968	FALSE	189	492	56	216	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1039	0.0661	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.17	FALSE	499	1288	110	792	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	12	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1134	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1134	FALSE	292	1546	117	613	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADNP2--NSF	7	19	ADNP2	3046	chr18:77875467:+	NSF	28882	chr17:44782125:+	ONLY_REF_SPLICE	YES	11	26	0.7	0.5	0.0661	0.1795	ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+,NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.7	0.2456	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	31	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	NO	0	1	1	0.97	0.0378	0.2929	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.3307	FALSE	189	492	56	216	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADNP2--NSF	11	2	ADNP2	3046	chr18:77875467:+	NSF	34084	chr17:44806265:+	INCL_NON_REF_SPLICE	YES	11	76	0.54	0.15	0.1039	0.0189	ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+,NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.54	0.1228	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	9	9	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4	0	0.82	1	0.085	0.085	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.17	FALSE	43	37	8	105	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1039	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1039	TRUE	0	0	0	434	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.085	0.0661	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1511	FALSE	462	80	0	856	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4D--CTD-2081C10.1	10	3	PDE4D	39303	chr5:58334686:-	CTD-2081C10.1	60771	chr5:53080974:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0945	0.0283	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,CTD-2081C10.1->chr5:53072474-53115516:-	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1228	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	9	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	35	11	0.29	0.56	0.085	0.0472	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.56	0.1322	TRUE	267	562	48	632	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	8	6	AC104820.2	16783	chr2:182227645:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	1	566	0.93	0.02	0.0756	0.0567	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.93	0.1323	FALSE	0	0	0	16	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYN--RP5-1043L13.1	9	2	LYN	1291	chr8:56792662:+	RP5-1043L13.1	44672	chr20:59102445:+	ONLY_REF_SPLICE	YES	52	0	0.17	1	0.085	0.0189	LYN->ArcherDX_panel,FoundationOne_panel,LYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr8:56792372-56923940:+,RP5-1043L13.1->chr20:58662895-59102516:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.1039	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	9	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.77	1	0.085	0.0094	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.0944	FALSE	189	492	56	216	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	16	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0472	0.1512	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.1984	FALSE	499	1288	110	792	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	20	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0.189	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2268	FALSE	369	2501	205	193	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	8	4	RP11-155G15.2	3309	chr5:96772337:+	RP11-1E3.1	9053	chr5:97004255:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0756	0.0378	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1134	FALSE	0	1	0	8	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	9	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.085	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.085	FALSE	0	0	0	189	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NSF--ADNP2	8	1	NSF	14236	chr17:44772028:+	ADNP2	31987	chr18:77890986:+	ONLY_REF_SPLICE	YES	26	17	0.26	0.35	0.0756	0.0094	NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,ADNP2->ADNP_homeobox_2,chr18:77866915-77905406:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.35	0.085	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	8	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0756	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0756	FALSE	369	2501	205	193	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	8	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0756	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0756	FALSE	515	4851	409	746	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMP3--MT-ND4	8	0	TIMP3	5621	chr22:33255392:+	MT-ND4	12727	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0756	0	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0756	FALSE	0	0	0	10	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	7	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0661	FALSE	369	2501	205	193	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	7	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0661	TRUE	22	156	2	142	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	6	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	32	13	0.22	0.41	0.0567	0.0283	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.41	0.085	TRUE	267	562	48	632	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0661	FALSE	462	80	0	856	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	6	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0567	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0567	TRUE	347	1186	183	220	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	12	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0.1134	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1417	FALSE	43	37	8	105	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	11	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.93	0.0283	0.1039	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1322	FALSE	189	492	56	216	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	1	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4	416	0.6	0.01	0.0472	0.0094	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.6	0.0566	FALSE	43	37	8	105	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	5	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.21	1	0.0472	0.0094	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.0566	FALSE	125	705	46	456	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EHD4--PRDM2	5	0	EHD4	1320	chr15:42264457:-	PRDM2	16961	chr1:14042036:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0472	0	EHD4->EH_domain_containing_4,chr15:42190950-42264776:-,PRDM2->Oncogene{Bushman},PR_domain_2,chr1:14026693-14151574:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0472	FALSE	189	492	56	216	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0378	0.0378	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.0756	FALSE	499	1288	110	792	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0472	TRUE	0	0	0	434	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0472	TRUE	0	0	0	518	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	3	MT-ND5	2150	chrM:13486:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2913	75	0	0.09	0.0378	0.0283	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0661	FALSE	43	37	8	105	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	4	2	MT-ND5	1953	chrM:13289:+	MT-ATP8	5878	chrM:8431:+	INCL_NON_REF_SPLICE	YES	2772	0	0	1	0.0378	0.0189	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0567	FALSE	43	37	8	105	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	4	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0378	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0378	FALSE	16	356	14	466	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	3	4	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	7991	chr5:96856933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0.0378	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0661	FALSE	0	1	1	12	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	2	MT-CO3	1075	chrM:9281:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.83	0.0283	0.0189	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0472	FALSE	189	492	56	216	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPLP1--TAGLN2	3	2	RPLP1	1189	chr15:69745311:+	TAGLN2	12447	chr1:159888311:-	INCL_NON_REF_SPLICE	YES	4152	1440	0	0	0.0283	0.0189	RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,TAGLN2->chr1:159887897-159895522:-,transgelin_2	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0472	FALSE	0	0	0	4	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	3	1	AC104820.2	6553	chr2:182091262:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	21	566	0.16	0.01	0.0283	0.0094	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.16	0.0377	FALSE	0	0	0	11	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAPZA2--SRP9	3	1	CAPZA2	3371	chr7:116502704:+	SRP9	25493	chr1:225965637:+	ONLY_REF_SPLICE	YES	37	36	0.1	0.1	0.0283	0.0094	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.1	0.0377	TRUE	0	0	0	9	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NALCN-AS1--MAP2K5	3	1	NALCN-AS1	2141	chr13:101392882:+	MAP2K5	24812	chr15:67923226:+	ONLY_REF_SPLICE	YES	0	12	1	0.25	0.0283	0.0094	NALCN-AS1->NALCN_antisense_RNA_1,chr13:101360579-101711638:+,MAP2K5->Oncogene{Bushman},chr15:67835047-68099461:+,mitogen-activated_protein_kinase_kinase_5	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPLP1--TAGLN2	3	1	RPLP1	1170	chr15:69745292:+	TAGLN2	12429	chr1:159888329:-	INCL_NON_REF_SPLICE	YES	3123	1374	0	0	0.0283	0.0094	RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,TAGLN2->chr1:159887897-159895522:-,transgelin_2	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0377	FALSE	0	0	0	4	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR3--TTC3	3	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	9	0	44	1	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	0	MT-ND5	1969	chrM:13305:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	FALSE	43	37	8	105	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	FALSE	499	1288	110	792	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	3	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	FALSE	369	2501	205	193	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	FALSE	369	2501	205	193	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	3	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	FALSE	272	151	14	158	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFV3--U2AF1	2	1	NDUFV3	5809	chr21:44317157:+	U2AF1	26761	chr21:44515853:-	ONLY_REF_SPLICE	YES	223	1172	0.01	0	0.0189	0.0094	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Substantia_nigra=1},NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0283	FALSE	0	5	0	8	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001171.1--SON	2	0	AP001171.1	1269	chr21:21630865:-	SON	18234	chr21:34931536:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	AP001171.1->chr21:21629065-21631133:-,SON->SON_DNA_binding_protein,chr21:34914924-34949812:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	33	0	0.13	1	0.0094	0.0378	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.0472	FALSE	164	806	69	479	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-219G17.4--PLA2G6	2	0	RP11-219G17.4	2765	chr17:76267333:-	PLA2G6	39371	chr22:38509661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_FI:{Testis=[count:23=pct:21.9],Brain=[count:18=pct:2.7],Nerve=[count:11=pct:6.5],Thyroid=[count:8=pct:4.5],Ovary=[count:6=pct:11.3],Colon=[count:5=pct:2.6],Pancreas=[count:3=pct:1.7],Uterus=[count:2=pct:4.7],Spleen=[count:2=pct:1.8],Blood=[count:2=pct:1.1],Prostate=[count:2=pct:3.3],Vagina=[count:1=pct:1.8],Blood_Vessel=[count:1=pct:0.3],Muscle=[count:1=pct:0.4],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},RP11-219G17.4->chr17:76257430-76274573:-,PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	63	15	0	9	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	FALSE	467	2173	244	435	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RRP1B--TCF25	2	0	RRP1B	2330	chr21:45089847:+	TCF25	35892	chr16:89967043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RRP1B->chr21:45079429-45115958:+,ribosomal_RNA_processing_1B,TCF25->chr16:89940000-89977792:+,transcription_factor_25	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HEPH--MSN	1	2	HEPH	1328	chrX:65382718:+	MSN	40279	chrX:64936680:+	ONLY_REF_SPLICE	YES	150	1434	0.02	0	0.0094	0.0189	HEPH->chrX:65382391-65488709:+,hephaestin,MSN->Oncogene{Bushman},chrX:64808257-64961791:+,moesin	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0283	FALSE	0	0	0	1	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC024084.1--AC009784.3	1	1	AC024084.1	2134	chr7:135715781:+	AC009784.3	10848	chr7:135926898:+	ONLY_REF_SPLICE	YES	0	16	1	0.11	0.0094	0.0094	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0188	FALSE	0	3	0	12	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC024084.1--AC009784.3	1	1	AC024084.1	2134	chr7:135715781:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	NO	0	22	1	0.08	0.0094	0.0094	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0188	FALSE	1	6	0	14	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	1	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	NO	21	664	0.09	0	0.0094	0.0094	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0188	FALSE	0	1	0	18	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE4D--CTD-2081C10.1	1	1	PDE4D	39303	chr5:58334686:-	CTD-2081C10.1	64040	chr5:53073116:-	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0094	0.0094	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,CTD-2081C10.1->chr5:53072474-53115516:-	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0094	0.0094	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0188	FALSE	192	492	57	212	0	FALSE	ACH-000641
CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--MKI67	1	1	RPS3	2292	chr11:75111821:+	MKI67	16082	chr10:129917583:-	ONLY_REF_SPLICE	YES	3672	145	0	0.01	0.0094	0.0094	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	CMK_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0188	FALSE	0	0	0	4	0	FALSE	ACH-000641
NCIH1819_LUNG	KPNB1--ZNF595	360	223	KPNB1	11478	chr17:45742524:+	ZNF595	31984	chr4:59323:+	ONLY_REF_SPLICE	YES	1154	771	0.34	0.43	4.3196	2.6757	{Klijn_CCL:Lung=1},KPNB1->chr17:45726842-45762871:+,karyopherin_subunit_beta_1,ZNF595->chr4:53179-88099:+,zinc_finger_protein_595	NCIH1819_LUNG	0.34	0.43	6.9953	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	WI2-1896O14.1--RP11-353N4.1	124	36	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	2	1	0.99	1.4879	0.432	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	NCIH1819_LUNG	0.99	1	1.9199	TRUE	361	258	24	38	0	FALSE	ACH-000033
NCIH1819_LUNG	ITFG1--RP11-435B5.7	79	62	ITFG1	24389	chr16:47271876:-	RP11-435B5.7	33894	chr1:143533272:-	ONLY_REF_SPLICE	YES	283	0	0.33	1	0.9479	0.7439	ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1,RP11-435B5.7->chr1:143527555-143533272:-	NCIH1819_LUNG	0.33	1	1.6918	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	WIPF2--FMNL1	61	45	WIPF2	1189	chr17:38375744:+	FMNL1	21700	chr17:43307971:+	ONLY_REF_SPLICE	YES	20	25	0.84	0.81	0.7319	0.5399	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,FMNL1->chr17:43298811-43324687:+,formin_like_1	NCIH1819_LUNG	0.81	0.84	1.2718	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	TIMM23B--LINC00843	57	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6839	0.3	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1819_LUNG	1	1	0.9839	TRUE	508	994	45	981	0	FALSE	ACH-000033
NCIH1819_LUNG	ZMAT3--CLDN11	53	28	ZMAT3	3280	chr3:178785271:-	CLDN11	32805	chr3:170425833:+	ONLY_REF_SPLICE	YES	90	14	0.47	0.85	0.6359	0.336	ZMAT3->chr3:178735011-178790067:-,zinc_finger_matrin-type_3,CLDN11->chr3:170136653-170578169:+,claudin_11	NCIH1819_LUNG	0.47	0.85	0.9719	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	RP11-96H19.1--RP11-446N19.1	38	52	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	10	0	0.9	1	0.456	0.6239	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1819_LUNG	0.9	1	1.0799	FALSE	407	2205	196	549	0	FALSE	ACH-000033
NCIH1819_LUNG	UQCC1--EDEM2	43	27	UQCC1	4118	chr20:33981895:-	EDEM2	33261	chr20:33730281:-	ONLY_REF_SPLICE	YES	54	127	0.56	0.36	0.5159	0.324	NEIGHBORS[24441],UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,EDEM2->ER_degradation_enhancing_alpha-mannosidase_like_protein_2,chr20:33703167-33865928:-	NCIH1819_LUNG	0.36	0.56	0.8399	FALSE	0	0	0	1	0	FALSE	ACH-000033
NCIH1819_LUNG	RP11-435B5.4--DAB1	41	34	RP11-435B5.4	2843	chr1:143465380:-	DAB1	32542	chr1:57756838:-	ONLY_REF_SPLICE	YES	41	1	0.65	0.99	0.492	0.408	RP11-435B5.4->chr1:143354963-143467632:-,DAB1->DAB1,_reelin_adaptor_protein,chr1:57460451-59012406:-	NCIH1819_LUNG	0.65	0.99	0.9	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	ZRANB2-AS2--CA10	48	4	ZRANB2-AS2	2131	chr1:71557387:+	CA10	47322	chr17:49731097:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.5759	0.048	ZRANB2-AS2->ZRANB2_antisense_RNA_2_(head_to_head),chr1:71547007-71955652:+,CA10->carbonic_anhydrase_10,chr17:49707674-50237377:-	NCIH1819_LUNG	0.98	1	0.6239	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	MT-TA--MT-TC	43	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5159	0.024	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1819_LUNG	1	1	0.5399	FALSE	462	80	0	856	0	FALSE	ACH-000033
NCIH1819_LUNG	RP11-96H19.1--RP11-446N19.1	30	33	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	10	10	0.86	0.86	0.36	0.396	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1819_LUNG	0.86	0.86	0.756	FALSE	515	4851	409	746	0	FALSE	ACH-000033
NCIH1819_LUNG	GTF2I--GTF2IRD1	35	0	GTF2I	1401	chr7:74072394:+	GTF2IRD1	55548	chr7:73944064:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.42	0	PROTCLUST,LOCAL_REARRANGEMENT:+:[55063],GTF2I->chr7:74071994-74175026:+,general_transcription_factor_IIi,GTF2IRD1->GTF2I_repeat_domain_containing_1,chr7:73868120-74016931:+	NCIH1819_LUNG	1	1	0.42	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	PLXDC1--TAF13	32	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.384	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH1819_LUNG	1	1	0.384	TRUE	7	10	0	216	0	FALSE	ACH-000033
NCIH1819_LUNG	TIMM23--RP11-464F9.1	32	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.384	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1819_LUNG	1	1	0.384	TRUE	519	3926	326	965	0	FALSE	ACH-000033
NCIH1819_LUNG	PAWR--LINC00504	26	17	PAWR	9188	chr12:80007355:-	LINC00504	28840	chr4:14861240:-	ONLY_REF_SPLICE	YES	206	0	0.17	1	0.312	0.204	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,LINC00504->chr4:14472089-14889793:-,long_intergenic_non-protein_coding_RNA_504	NCIH1819_LUNG	0.17	1	0.516	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	SPINT2--KRT18	28	1	SPINT2	9728	chr19:38782783:+	KRT18	13710	chr12:53343165:+	INCL_NON_REF_SPLICE	YES	3388	13773	0.01	0	0.336	0.012	SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2,KRT18->chr12:53342655-53346685:+,keratin_18	NCIH1819_LUNG	0	0.01	0.348	TRUE	0	0	0	2	0	FALSE	ACH-000033
NCIH1819_LUNG	ITFG1--RP11-435B5.7	11	62	ITFG1	24389	chr16:47271876:-	RP11-435B5.7	33862	chr1:143533304:-	INCL_NON_REF_SPLICE	YES	283	0	0.21	1	0.132	0.7439	ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1,RP11-435B5.7->chr1:143527555-143533272:-	NCIH1819_LUNG	0.21	1	0.8759	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	CBS--U2AF1	18	24	CBS	14747	chr21:44480551:-	U2AF1	26640	chr21:44524512:-	ONLY_REF_SPLICE	YES	574	747	0.07	0.05	0.216	0.288	LOCAL_REARRANGEMENT:-:[16013],CBS->chr21:44473301-44497053:-,cystathionine-beta-synthase,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	NCIH1819_LUNG	0.05	0.07	0.504	TRUE	0	0	0	1	0	FALSE	ACH-000033
NCIH1819_LUNG	RP11-96H19.1--RP11-446N19.1	8	59	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.94	1	0.096	0.7079	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1819_LUNG	0.94	1	0.8039	FALSE	192	492	57	212	0	FALSE	ACH-000033
NCIH1819_LUNG	MT-ND6--MT-TE	20	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	6	0	0.83	1	0.24	0.12	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1819_LUNG	0.83	1	0.36	FALSE	499	1288	110	792	0	FALSE	ACH-000033
NCIH1819_LUNG	RP11-96H19.1--RP11-446N19.1	5	57	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	10	0	0.86	1	0.06	0.6839	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1819_LUNG	0.86	1	0.7439	FALSE	275	511	55	178	0	FALSE	ACH-000033
NCIH1819_LUNG	MT-ND6--MT-TE	18	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.216	0.012	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1819_LUNG	0.95	1	0.228	FALSE	499	1288	110	792	0	FALSE	ACH-000033
NCIH1819_LUNG	WIPF2--FMNL1	7	45	WIPF2	1189	chr17:38375744:+	FMNL1	20354	chr17:43299275:+	ONLY_REF_SPLICE	YES	20	0	0.72	1	0.084	0.5399	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,FMNL1->chr17:43298811-43324687:+,formin_like_1	NCIH1819_LUNG	0.72	1	0.6239	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	RP11-435B5.4--DAB1	7	41	RP11-435B5.4	4638	chr1:143462284:-	DAB1	32542	chr1:57756838:-	ONLY_REF_SPLICE	YES	20	1	0.71	0.98	0.084	0.492	RP11-435B5.4->chr1:143354963-143467632:-,DAB1->DAB1,_reelin_adaptor_protein,chr1:57460451-59012406:-	NCIH1819_LUNG	0.71	0.98	0.576	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	WIPF2--FMNL1	5	47	WIPF2	1214	chr17:38375769:+	FMNL1	21700	chr17:43307971:+	ONLY_REF_SPLICE	YES	21	25	0.71	0.68	0.06	0.5639	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,FMNL1->chr17:43298811-43324687:+,formin_like_1	NCIH1819_LUNG	0.68	0.71	0.6239	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	RP11-123O10.4--GRIP1	14	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.168	0.048	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1819_LUNG	1	1	0.216	FALSE	416	2512	207	587	0	FALSE	ACH-000033
NCIH1819_LUNG	CTC-559E9.6--CREM	10	17	CTC-559E9.6	2476	chr19:19897500:+	CREM	13664	chr10:35437296:+	ONLY_REF_SPLICE	YES	4	62	0.87	0.3	0.12	0.204	CTC-559E9.6->chr19:19887411-19945736:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	NCIH1819_LUNG	0.3	0.87	0.324	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	RP11-96H19.1--RP11-446N19.1	3	36	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	10	0.91	0.8	0.036	0.432	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1819_LUNG	0.8	0.91	0.468	FALSE	467	2173	244	435	0	FALSE	ACH-000033
NCIH1819_LUNG	RRAGD--MEI4	11	2	RRAGD	1425	chr6:90121565:-	MEI4	15242	chr6:78400375:+	ONLY_REF_SPLICE	YES	45	0	0.22	1	0.132	0.024	RRAGD->Ras_related_GTP_binding_D,chr6:90074355-90121989:-,MEI4->chr6:78400375-78636691:+,meiotic_double-stranded_break_formation_protein_4	NCIH1819_LUNG	0.22	1	0.156	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	TTC6--MIPOL1	10	4	TTC6	2242	chr14:38075947:+	MIPOL1	73587	chr14:37838722:+	ONLY_REF_SPLICE	YES	3	49	0.82	0.22	0.12	0.048	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	NCIH1819_LUNG	0.22	0.82	0.168	TRUE	0	3	0	4	3	TRUE	ACH-000033
NCIH1819_LUNG	MT-CO3--MT-ATP6	10	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	2	1	0.85	0.92	0.12	0.012	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1819_LUNG	0.85	0.92	0.132	FALSE	189	492	56	216	0	FALSE	ACH-000033
NCIH1819_LUNG	CTC-559E9.6--CREM	4	18	CTC-559E9.6	4541	chr19:19900630:+	CREM	13664	chr10:35437296:+	ONLY_REF_SPLICE	YES	1	62	0.96	0.26	0.048	0.216	CTC-559E9.6->chr19:19887411-19945736:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	NCIH1819_LUNG	0.26	0.96	0.264	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	MT-ND6--MT-TE	5	14	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	6	0	0.76	1	0.06	0.168	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1819_LUNG	0.76	1	0.228	FALSE	499	1288	110	792	0	FALSE	ACH-000033
NCIH1819_LUNG	MT-CO3--MT-ATP6	4	15	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	3	0.9	0.86	0.048	0.18	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1819_LUNG	0.86	0.9	0.228	FALSE	189	492	56	216	0	FALSE	ACH-000033
NCIH1819_LUNG	MT-CO3--MT-ATP6	5	10	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.83	0.06	0.12	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1819_LUNG	0.83	1	0.18	FALSE	189	492	56	216	0	FALSE	ACH-000033
NCIH1819_LUNG	ZRANB2-AS2--CA10	6	6	ZRANB2-AS2	3253	chr1:71558934:+	CA10	47322	chr17:49731097:-	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.072	0.072	ZRANB2-AS2->ZRANB2_antisense_RNA_2_(head_to_head),chr1:71547007-71955652:+,CA10->carbonic_anhydrase_10,chr17:49707674-50237377:-	NCIH1819_LUNG	0.8	1	0.144	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	CTC-559E9.6--CREM	4	13	CTC-559E9.6	1393	chr19:19887803:+	CREM	13664	chr10:35437296:+	ONLY_REF_SPLICE	YES	5	62	0.77	0.22	0.048	0.156	CTC-559E9.6->chr19:19887411-19945736:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	NCIH1819_LUNG	0.22	0.77	0.204	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	MT-CO3--MT-ATP6	4	12	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	2	0.94	0.89	0.048	0.144	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1819_LUNG	0.89	0.94	0.192	FALSE	189	492	56	216	0	FALSE	ACH-000033
NCIH1819_LUNG	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.084	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1819_LUNG	1	1	0.084	FALSE	462	80	0	856	0	FALSE	ACH-000033
NCIH1819_LUNG	NRIP1--AF127936.7	7	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.084	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1819_LUNG	1	1	0.084	FALSE	125	705	46	456	0	FALSE	ACH-000033
NCIH1819_LUNG	TRIM37--TMEM186	5	7	TRIM37	2583	chr17:57181654:-	TMEM186	39614	chr16:8874618:-	ONLY_REF_SPLICE	YES	110	5	0.1	0.71	0.06	0.084	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,TMEM186->chr16:8874241-8891505:-,transmembrane_protein_186	NCIH1819_LUNG	0.1	0.71	0.144	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	CTD-2008L17.1--RP11-456O19.2	6	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.072	0.012	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1819_LUNG	0.78	1	0.084	FALSE	33	240	4	98	0	FALSE	ACH-000033
NCIH1819_LUNG	MT-ND6--MT-TE	3	13	MT-ND6	1221	chrM:14453:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	6	0	0.73	1	0.036	0.156	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1819_LUNG	0.73	1	0.192	FALSE	499	1288	110	792	0	FALSE	ACH-000033
NCIH1819_LUNG	CTC-559E9.6--CREM	1	20	CTC-559E9.6	2476	chr19:19897500:+	CREM	12566	chr10:35426710:+	ONLY_REF_SPLICE	YES	4	66	0.84	0.24	0.012	0.24	CTC-559E9.6->chr19:19887411-19945736:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	NCIH1819_LUNG	0.24	0.84	0.252	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	EMP2--KRT18	6	0	EMP2	3453	chr16:10641393:-	KRT18	17507	chr12:53342924:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.072	0	EMP2->chr16:10622279-10674555:-,epithelial_membrane_protein_2,KRT18->chr12:53342655-53346685:+,keratin_18	NCIH1819_LUNG	1	1	0.072	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	ARHGEF26--PLCH1	5	3	ARHGEF26	5259	chr3:153847508:+	PLCH1	52879	chr3:155093578:-	ONLY_REF_SPLICE	YES	45	0	0.15	1	0.06	0.036	ARHGEF26->Rho_guanine_nucleotide_exchange_factor_26,chr3:153838792-153975616:+,PLCH1->chr3:155093369-155462856:-,phospholipase_C_eta_1	NCIH1819_LUNG	0.15	1	0.096	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	MT-CO3--MT-ATP6	3	11	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.82	0.036	0.132	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1819_LUNG	0.82	1	0.168	FALSE	189	492	56	216	0	FALSE	ACH-000033
NCIH1819_LUNG	MT-ND6--MT-TE	5	2	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.06	0.024	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1819_LUNG	0.88	1	0.084	FALSE	499	1288	110	792	0	FALSE	ACH-000033
NCIH1819_LUNG	WDYHV1--ATAD2	5	2	WDYHV1	8228	chr8:124453589:+	ATAD2	35315	chr8:124351686:-	ONLY_REF_SPLICE	YES	33	289	0.17	0.02	0.06	0.024	LOCAL_INVERSION:+:-:[375],WDYHV1->WDYHV_motif_containing_1,chr8:124428965-124479470:+,ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-	NCIH1819_LUNG	0.02	0.17	0.084	TRUE	0	0	0	1	0	FALSE	ACH-000033
NCIH1819_LUNG	AP000350.4--PKM	4	4	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	48	1	0.14	0.048	0.048	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	NCIH1819_LUNG	0.14	1	0.096	TRUE	0	0	0	14	0	TRUE	ACH-000033
NCIH1819_LUNG	MT-CO3--MT-ATP6	3	8	MT-CO3	1038	chrM:9244:+	MT-ATP6	5225	chrM:8967:+	INCL_NON_REF_SPLICE	YES	0	7	1	0.61	0.036	0.096	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1819_LUNG	0.61	1	0.132	FALSE	189	492	56	216	0	FALSE	ACH-000033
NCIH1819_LUNG	MT-ND6--COX7C	5	0	MT-ND6	1261	chrM:14413:-	COX7C	4608	chr5:85913803:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.06	0	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COX7C->chr5:85913721-85916779:+,cytochrome_c_oxidase_subunit_7C	NCIH1819_LUNG	1	1	0.06	FALSE	0	0	0	7	0	FALSE	ACH-000033
NCIH1819_LUNG	RCC1--GNAS	5	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.06	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1819_LUNG	1	1	0.06	TRUE	0	3	0	13	2	TRUE	ACH-000033
NCIH1819_LUNG	RP11-634B7.4--TRIM58	4	4	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	14	1	0.36	0.048	0.048	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	NCIH1819_LUNG	0.36	1	0.096	TRUE	158	633	76	73	0	FALSE	ACH-000033
NCIH1819_LUNG	ZMAT3--CLDN11	3	8	ZMAT3	3280	chr3:178785271:-	CLDN11	38176	chr3:170577772:+	ONLY_REF_SPLICE	YES	90	16	0.11	0.41	0.036	0.096	ZMAT3->chr3:178735011-178790067:-,zinc_finger_matrin-type_3,CLDN11->chr3:170136653-170578169:+,claudin_11	NCIH1819_LUNG	0.11	0.41	0.132	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	CTC-559E9.6--CREM	1	15	CTC-559E9.6	1393	chr19:19887803:+	CREM	12566	chr10:35426710:+	ONLY_REF_SPLICE	YES	5	66	0.76	0.2	0.012	0.18	CTC-559E9.6->chr19:19887411-19945736:+,CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+	NCIH1819_LUNG	0.2	0.76	0.192	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	ITFG1--RP11-435B5.7	2	10	ITFG1	24389	chr16:47271876:-	RP11-435B5.7	35098	chr1:143529235:-	ONLY_REF_SPLICE	YES	283	2	0.04	0.86	0.024	0.12	ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1,RP11-435B5.7->chr1:143527555-143533272:-	NCIH1819_LUNG	0.04	0.86	0.144	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	MSI2--TES	4	2	MSI2	23267	chr17:55607085:+	TES	51746	chr7:115874588:+	ONLY_REF_SPLICE	YES	68	764	0.08	0.01	0.048	0.024	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	NCIH1819_LUNG	0.01	0.08	0.072	FALSE	0	0	0	1	0	FALSE	ACH-000033
NCIH1819_LUNG	MT-TA--MT-TC	4	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.048	0.024	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1819_LUNG	1	1	0.072	FALSE	462	80	0	856	0	FALSE	ACH-000033
NCIH1819_LUNG	ZMAT3--CLDN11	2	10	ZMAT3	3280	chr3:178785271:-	CLDN11	33956	chr3:170443349:+	ONLY_REF_SPLICE	YES	90	18	0.12	0.4	0.024	0.12	ZMAT3->chr3:178735011-178790067:-,zinc_finger_matrin-type_3,CLDN11->chr3:170136653-170578169:+,claudin_11	NCIH1819_LUNG	0.12	0.4	0.144	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	MT-CO3--MT-ATP6	4	1	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	1	1	0.83	0.83	0.048	0.012	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1819_LUNG	0.83	0.83	0.06	FALSE	189	492	56	216	0	FALSE	ACH-000033
NCIH1819_LUNG	MYO10--AP001347.6	2	9	MYO10	20053	chr5:16758227:-	AP001347.6	56325	chr21:15515830:+	ONLY_REF_SPLICE	YES	26	6	0.3	0.65	0.024	0.108	MYO10->chr5:16665395-16936372:-,myosin_X,AP001347.6->chr21:15399742-15516789:+	NCIH1819_LUNG	0.3	0.65	0.132	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	SFPQ--ACTB	4	1	SFPQ	1338	chr1:35658412:-	ACTB	22349	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	168	4	0.03	0.56	0.048	0.012	GTEx&tcga_normals:1/3694=0.03%,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH1819_LUNG	0.03	0.56	0.06	TRUE	0	0	0	3	0	FALSE	ACH-000033
NCIH1819_LUNG	TRIM37--TMEM186	2	9	TRIM37	2583	chr17:57181654:-	TMEM186	38931	chr16:8875301:-	ONLY_REF_SPLICE	YES	110	0	0.09	1	0.024	0.108	TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,TMEM186->chr16:8874241-8891505:-,transmembrane_protein_186	NCIH1819_LUNG	0.09	1	0.132	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	RP11-59N23.1--CMAS	4	0	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.048	0	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH1819_LUNG	1	1	0.048	TRUE	21	102	17	28	0	FALSE	ACH-000033
NCIH1819_LUNG	RRAGD--MEI4	4	0	RRAGD	1425	chr6:90121565:-	MEI4	16488	chr6:78470847:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.048	0	RRAGD->Ras_related_GTP_binding_D,chr6:90074355-90121989:-,MEI4->chr6:78400375-78636691:+,meiotic_double-stranded_break_formation_protein_4	NCIH1819_LUNG	1	1	0.048	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	PAWR--LINC00504	2	7	PAWR	9188	chr12:80007355:-	LINC00504	31415	chr4:14702405:-	ONLY_REF_SPLICE	YES	206	0	0.04	1	0.024	0.084	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,LINC00504->chr4:14472089-14889793:-,long_intergenic_non-protein_coding_RNA_504	NCIH1819_LUNG	0.04	1	0.108	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	TMEM54--MT-CO2	3	3	TMEM54	2326	chr1:33363811:-	MT-CO2	8517	chrM:7597:+	INCL_NON_REF_SPLICE	YES	608	0	0.01	1	0.036	0.036	TMEM54->chr1:33360195-33367039:-,transmembrane_protein_54,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH1819_LUNG	0.01	1	0.072	FALSE	0	0	0	10	0	FALSE	ACH-000033
NCIH1819_LUNG	LRBA--PET112	3	2	LRBA	15188	chr4:151818891:-	PET112	80372	chr4:152640690:-	ONLY_REF_SPLICE	YES	24	128	0.17	0.04	0.036	0.024	LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,PET112->chr4:152591656-152682175:-	NCIH1819_LUNG	0.04	0.17	0.06	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	MT-ND6--MT-TE	3	2	MT-ND6	1029	chrM:14645:-	MT-TE	4495	chrM:14773:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.036	0.024	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1819_LUNG	0.83	1	0.06	FALSE	499	1288	110	792	0	FALSE	ACH-000033
NCIH1819_LUNG	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0.024	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1819_LUNG	1	1	0.06	FALSE	462	80	0	856	0	FALSE	ACH-000033
NCIH1819_LUNG	TTC6--MIPOL1	3	2	TTC6	1162	chr14:38065213:+	MIPOL1	73587	chr14:37838722:+	ONLY_REF_SPLICE	YES	2	49	0.71	0.09	0.036	0.024	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	NCIH1819_LUNG	0.09	0.71	0.06	TRUE	0	3	0	4	2	TRUE	ACH-000033
NCIH1819_LUNG	WDYHV1--ATAD2	3	2	WDYHV1	8376	chr8:124453737:+	ATAD2	35315	chr8:124351686:-	ONLY_REF_SPLICE	YES	39	289	0.11	0.02	0.036	0.024	LOCAL_INVERSION:+:-:[375],WDYHV1->WDYHV_motif_containing_1,chr8:124428965-124479470:+,ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-	NCIH1819_LUNG	0.02	0.11	0.06	TRUE	0	0	0	1	0	FALSE	ACH-000033
NCIH1819_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	1	0.8	0.8	0.036	0.012	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1819_LUNG	0.8	0.8	0.048	FALSE	189	492	56	216	0	FALSE	ACH-000033
NCIH1819_LUNG	THRA--ZPBP2	3	1	THRA	6927	chr17:38230794:+	ZPBP2	23019	chr17:38026947:+	ONLY_REF_SPLICE	YES	129	0	0.03	1	0.036	0.012	THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha,ZPBP2->chr17:38024417-38034149:+,zona_pellucida_binding_protein_2	NCIH1819_LUNG	0.03	1	0.048	TRUE	0	0	0	2	0	FALSE	ACH-000033
NCIH1819_LUNG	C17orf76-AS1--ANXA2	3	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	NCIH1819_LUNG	1	1	0.036	TRUE	0	0	0	10	0	TRUE	ACH-000033
NCIH1819_LUNG	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1819_LUNG	1	1	0.036	FALSE	292	1546	117	613	0	FALSE	ACH-000033
NCIH1819_LUNG	RP11-155G15.2--RP11-1E3.1	3	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH1819_LUNG	1	1	0.036	FALSE	46	201	11	112	0	FALSE	ACH-000033
NCIH1819_LUNG	RP11-59N23.3--RP11-729I10.2	3	0	RP11-59N23.3	1459	chr12:21815705:+	RP11-729I10.2	7910	chr12:22022516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.036	0	NEIGHBORS[67178],RP11-59N23.3->chr12:21815247-21912966:+,RP11-729I10.2->chr12:21980144-22040891:+	NCIH1819_LUNG	1	1	0.036	FALSE	0	2	0	5	0	FALSE	ACH-000033
NCIH1819_LUNG	NRIP1--AF127936.7	1	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	24	0	0.23	1	0.012	0.072	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1819_LUNG	0.23	1	0.084	FALSE	164	806	69	479	0	FALSE	ACH-000033
NCIH1819_LUNG	TTC6--MIPOL1	2	2	TTC6	2242	chr14:38075947:+	MIPOL1	77335	chr14:37892060:+	ONLY_REF_SPLICE	YES	3	62	0.57	0.06	0.024	0.024	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	NCIH1819_LUNG	0.06	0.57	0.048	TRUE	0	4	0	4	2	TRUE	ACH-000033
NCIH1819_LUNG	LRBA--PET112	2	1	LRBA	14108	chr4:151821201:-	PET112	80372	chr4:152640690:-	ONLY_REF_SPLICE	YES	17	128	0.15	0.02	0.024	0.012	LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,PET112->chr4:152591656-152682175:-	NCIH1819_LUNG	0.02	0.15	0.036	TRUE	0	0	0	1	0	FALSE	ACH-000033
NCIH1819_LUNG	ABAT--MSI2	2	0	ABAT	1147	chr16:8768568:+	MSI2	56247	chr17:55607037:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	ABAT->4-aminobutyrate_aminotransferase,chr16:8768422-8878432:+,MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2	NCIH1819_LUNG	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	AGBL4--AGBL4-IT1	2	0	AGBL4	3399	chr1:50162985:-	AGBL4-IT1	30507	chr1:49840016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	NEIGHBORS_OVERLAP:-:-:[97884],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,AGBL4-IT1->AGBL4_intronic_transcript_1,chr1:49839873-49937757:-	NCIH1819_LUNG	1	1	0.024	FALSE	75	131	5	14	0	FALSE	ACH-000033
NCIH1819_LUNG	CMTM8--CMTM7	2	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	NCIH1819_LUNG	1	1	0.024	FALSE	118	557	29	88	0	FALSE	ACH-000033
NCIH1819_LUNG	HNRNPA2B1--GNAS	2	0	HNRNPA2B1	1958	chr7:26240192:-	GNAS	30423	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1819_LUNG	1	1	0.024	TRUE	0	0	0	3	0	TRUE	ACH-000033
NCIH1819_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1819_LUNG	1	1	0.024	FALSE	25	145	6	90	0	FALSE	ACH-000033
NCIH1819_LUNG	PRKDC--FAM73A	2	0	PRKDC	23220	chr8:48824970:-	FAM73A	91428	chr1:78267016:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,FAM73A->chr1:78245309-78344106:+,family_with_sequence_similarity_73_member_A	NCIH1819_LUNG	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000033
NCIH1819_LUNG	SHROOM3--CCNI	2	0	SHROOM3	6004	chr4:77507622:+	CCNI	34951	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx&tcga_normals:1/3694=0.03%,SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3,CCNI->chr4:77968311-77997158:-,cyclin_I	NCIH1819_LUNG	1	1	0.024	TRUE	0	1	0	3	0	TRUE	ACH-000033
NCIH1819_LUNG	THRA--ZPBP2	2	0	THRA	6927	chr17:38230794:+	ZPBP2	23789	chr17:38027717:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha,ZPBP2->chr17:38024417-38034149:+,zona_pellucida_binding_protein_2	NCIH1819_LUNG	1	1	0.024	TRUE	0	0	0	2	0	TRUE	ACH-000033
NCIH1819_LUNG	CTD-2008L17.1--RP11-456O19.2	1	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.012	0.036	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1819_LUNG	0.67	1	0.048	FALSE	20	187	4	79	0	FALSE	ACH-000033
NCIH1819_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	8	47	0.27	0.06	0.012	0.024	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1819_LUNG	0.06	0.27	0.036	FALSE	16	356	14	466	0	FALSE	ACH-000033
NCIH1819_LUNG	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.012	0.024	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1819_LUNG	1	1	0.036	FALSE	93	270	15	244	0	FALSE	ACH-000033
NCIH1819_LUNG	WIPF2--FMNL1	1	2	WIPF2	1189	chr17:38375744:+	FMNL1	26946	chr17:43313503:+	ONLY_REF_SPLICE	NO	20	462	0.13	0.01	0.012	0.024	WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,FMNL1->chr17:43298811-43324687:+,formin_like_1	NCIH1819_LUNG	0.01	0.13	0.036	FALSE	0	0	0	1	0	FALSE	ACH-000033
NCIH1819_LUNG	AHNAK--HSP90AA1	1	1	AHNAK	23876	chr11:62284482:-	HSP90AA1	35284	chr14:102551335:-	ONLY_REF_SPLICE	NO	1009	6495	0	0	0.012	0.012	GTEx&tcga_normals:2/3694=0.05%,AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-,HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1	NCIH1819_LUNG	0	0	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000033
NCIH1819_LUNG	DMRTA1--RP11-399D6.2	1	1	DMRTA1	1892	chr9:22447731:+	RP11-399D6.2	11667	chr9:22674442:+	ONLY_REF_SPLICE	YES	98	0	0.02	1	0.012	0.012	DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+,RP11-399D6.2->chr9:22646199-22824212:+	NCIH1819_LUNG	0.02	1	0.024	TRUE	0	1	0	4	1	FALSE	ACH-000033
NCIH1819_LUNG	GTF2I--GTF2IRD1	1	1	GTF2I	20734	chr7:74149874:+	GTF2IRD1	55548	chr7:73944064:+	ONLY_REF_SPLICE	NO	202	43	0.01	0.04	0.012	0.012	PROTCLUST,LOCAL_REARRANGEMENT:+:[55063],GTF2I->chr7:74071994-74175026:+,general_transcription_factor_IIi,GTF2IRD1->GTF2I_repeat_domain_containing_1,chr7:73868120-74016931:+	NCIH1819_LUNG	0.01	0.04	0.024	FALSE	0	3	0	1	0	FALSE	ACH-000033
NCIH1819_LUNG	RP11-59N23.3--RP11-729I10.2	1	1	RP11-59N23.3	1459	chr12:21815705:+	RP11-729I10.2	5579	chr12:21980144:+	ONLY_REF_SPLICE	NO	5	0	0.29	1	0.012	0.012	NEIGHBORS[67178],RP11-59N23.3->chr12:21815247-21912966:+,RP11-729I10.2->chr12:21980144-22040891:+	NCIH1819_LUNG	0.29	1	0.024	FALSE	0	2	0	4	0	FALSE	ACH-000033
NCIH1819_LUNG	XKR9--RP11-326E22.1	1	1	XKR9	8344	chr8:71619388:+	RP11-326E22.1	21087	chr8:72111375:+	ONLY_REF_SPLICE	YES	102	0	0.02	1	0.012	0.012	GTEx_FI:{Brain=[count:4=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Liver=[count:1=pct:0.8]},XKR9->XK_related_9,chr8:71581600-71702606:+,RP11-326E22.1->chr8:72067692-72116458:+	NCIH1819_LUNG	0.02	1	0.024	TRUE	5	29	0	13	0	FALSE	ACH-000033
NCIH1819_LUNG	ZBTB11--DNAJC21	1	1	ZBTB11	9154	chr3:101374948:-	DNAJC21	26961	chr5:34945827:+	ONLY_REF_SPLICE	NO	66	271	0.03	0.01	0.012	0.012	ZBTB11->chr3:101367733-101396339:-,zinc_finger_and_BTB_domain_containing_11,DNAJC21->DnaJ_heat_shock_protein_family_(Hsp40)_member_C21,chr5:34929698-34959069:+	NCIH1819_LUNG	0.01	0.03	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000033
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-29--AC096579.7	5	3087	IGKV2-29	1726	chr2:89533668:-	AC096579.7	6420	chr2:89161438:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	41.9366	GTEx_FI:{Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Liver=[count:1=pct:0.8],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Esophagus=[count:1=pct:0.2]},IGKV2-29->chr2:89533655-89534393:-,immunoglobulin_kappa_variable_2-29_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	42.0045	TRUE	1	5	2	1	3	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-29--AC096579.7	6	521	IGKV2-29	1495	chr2:89533899:-	AC096579.7	7461	chr2:89157196:-	INCL_NON_REF_SPLICE	YES	1689	0	0.24	1	0.0815	7.0777	GTEx_FI:{Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Liver=[count:1=pct:0.8],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Esophagus=[count:1=pct:0.2]},IGKV2-29->chr2:89533655-89534393:-,immunoglobulin_kappa_variable_2-29_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	7.1592	TRUE	5	108	11	2	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	83	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1275	0.2717	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.3992	TRUE	508	994	45	981	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-ND5	59	1	IGH@	97384	chr14:106321310:-	MT-ND5	131849	chrM:12384:+	INCL_NON_REF_SPLICE	YES	18303	0	0	1	0.8015	0.0136	IGH@->Oncogene{Bushman},MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.8151	FALSE	0	0	0	2	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	49	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	71	2	0.41	0.96	0.6657	0.0136	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.96	0.6793	TRUE	519	3926	326	965	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EBF1--RP11-526F3.1	36	14	EBF1	11419	chr5:158223353:-	RP11-526F3.1	26589	chr5:111585295:+	ONLY_REF_SPLICE	YES	27	0	0.65	1	0.4891	0.1902	EBF1->Oncogene{Bushman},chr5:158122928-158526769:-,early_B-cell_factor_1,RP11-526F3.1->chr5:111563980-111593006:+	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	0.6793	TRUE	0	0	0	1	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	37	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5026	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5026	TRUE	0	0	0	518	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGH@	32	2	AC096579.7	4087	chr2:89156831:-	IGH@	104810	chr14:106321308:-	INCL_NON_REF_SPLICE	YES	2218	18251	0.02	0	0.4347	0.0272	GTEx_FI:{Spleen=[count:2=pct:1.8]},AC096579.7->chr2:89130700-89165653:-,IGH@->Oncogene{Bushman}	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.4619	TRUE	1	0	0	1	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	27	11	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	2	3	0.95	0.93	0.3668	0.1494	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.95	0.5162	TRUE	0	48	0	65	48	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	23	1	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	3	3	0.89	0.89	0.3125	0.0136	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.89	0.3261	TRUE	0	16	0	53	13	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	21	0	IGH@	97640	chr14:106321054:-	TMSB4X	131816	chrX:12993241:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2853	0	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2853	TRUE	0	0	0	6	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	18	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.2445	0.0272	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2717	FALSE	499	1288	110	792	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	13	21	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	129	10	0.21	0.77	0.1766	0.2853	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.77	0.4619	TRUE	267	562	48	632	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAH11--PHF14	15	5	DNAH11	64105	chr7:21828960:+	PHF14	109119	chr7:11101418:+	ONLY_REF_SPLICE	YES	0	21	1	0.49	0.2038	0.0679	DNAH11->chr7:21582833-21941457:+,dynein_axonemal_heavy_chain_11,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	1	0.2717	TRUE	0	0	0	1	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	16	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2174	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2174	TRUE	0	0	0	434	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPA3-AS1--DNAH11	14	5	RPA3-AS1	3140	chr7:7713084:+	DNAH11	78161	chr7:21824045:+	ONLY_REF_SPLICE	YES	26	0	0.42	1	0.1902	0.0679	RPA3-AS1->chr7:7680342-8043689:+,DNAH11->chr7:21582833-21941457:+,dynein_axonemal_heavy_chain_11	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.2581	TRUE	0	0	0	1	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1766	0.0408	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.2174	FALSE	499	1288	110	792	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	11	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1494	0.0951	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2445	FALSE	462	80	0	856	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	9	14	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	123	10	0.16	0.7	0.1223	0.1902	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.7	0.3125	TRUE	267	562	48	632	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1DP3--FRY	9	6	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1223	0.0815	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.2038	FALSE	20	24	2	21	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	9	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1223	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1223	TRUE	0	0	0	81	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	8	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	3	0.92	0.79	0.1087	0.0408	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	0.92	0.1495	FALSE	515	4851	409	746	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-29--AC096579.7	6	7	IGKV2-29	1050	chr2:89534344:-	AC096579.7	7461	chr2:89157196:-	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.0815	0.0951	GTEx_FI:{Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Liver=[count:1=pct:0.8],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Esophagus=[count:1=pct:0.2]},IGKV2-29->chr2:89533655-89534393:-,immunoglobulin_kappa_variable_2-29_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.1766	TRUE	5	108	11	2	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	4	11	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0543	0.1494	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.2037	TRUE	0	35	0	55	35	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	6	1	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0815	0.0136	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0951	TRUE	0	1	0	84	1	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	6	0	AC104389.28	1084	chr11:5526799:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0815	TRUE	0	16	0	53	13	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0543	0.0951	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1494	FALSE	499	1288	110	792	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	5	0	AC104389.28	1093	chr11:5526790:-	HBE1	13750	chr11:5291386:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0679	TRUE	0	16	0	53	13	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	5	0	IGH@	97649	chr14:106321045:-	TMSB4X	131824	chrX:12993249:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0679	TRUE	0	0	0	6	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0408	0.1087	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1495	FALSE	499	1288	110	792	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0679	FALSE	462	80	0	856	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	4	1	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.0543	0.0136	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.0679	TRUE	0	11	0	26	8	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	4	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	4252	0	0	1	0.0543	0.0136	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0679	FALSE	0	0	0	100	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0543	TRUE	0	0	0	81	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	4	EIF1	1121	chr17:39845257:+	RPS28	8168	chr19:8386425:+	INCL_NON_REF_SPLICE	YES	733	1	0.01	0.88	0.0408	0.0543	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.88	0.0951	FALSE	0	0	0	81	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	4	0	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0543	TRUE	13	49	2	38	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1DP3--FRY	2	6	EEF1DP3	3331	chr13:32520318:+	FRY	12212	chr13:32612567:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0272	0.0815	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.1087	FALSE	1	3	0	6	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	3	2	IGH@	97658	chr14:106321036:-	TMSB4X	131833	chrX:12993258:+	INCL_NON_REF_SPLICE	YES	16487	0	0	1	0.0408	0.0272	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.068	FALSE	0	0	0	6	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	3	1	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0408	0.0136	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0544	TRUE	0	1	0	84	1	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0136	0.0679	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0815	FALSE	407	2205	196	549	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0.0136	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	62	24	1	171	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	1	4	AC104389.28	2951	chr11:5367492:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	9	3	0.36	0.62	0.0136	0.0543	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.62	0.0679	TRUE	0	48	0	65	48	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--TBCA	2	0	C17orf76-AS1	1593	chr17:16342728:+	TBCA	16867	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	C17orf76-AS1->chr17:16342136-16381992:+,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COL4A3BP--GLDC	2	0	COL4A3BP	3162	chr5:74801807:-	GLDC	34678	chr9:6605278:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	COL4A3BP->chr5:74664311-74807963:-,collagen_type_IV_alpha_3_binding_protein,GLDC->chr9:6532464-6645650:-,glycine_decarboxylase	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSG2--B4GALT6	2	0	DSG2	1254	chr18:29078259:+	B4GALT6	24454	chr18:29246335:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	LOCAL_INVERSION:+:-:[73239],DSG2->Oncogene{Bushman},chr18:29078006-29128971:+,desmoglein_2,B4GALT6->beta-1,4-galactosyltransferase_6,chr18:29202210-29265799:-	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHRF1--PPP1R12C	2	0	PHRF1	1107	chr11:576592:+	PPP1R12C	30595	chr19:55607703:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	3	1	0.57	0.0136	0.0408	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.0544	FALSE	467	2173	244	435	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	1	1	AC104389.28	2337	chr11:5368106:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	4	3	0.33	0.4	0.0136	0.0136	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.4	0.0272	TRUE	0	0	0	9	0	TRUE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHTOP--NAMPT	1	1	CHTOP	4172	chr1:153610924:+	NAMPT	25909	chr7:105894950:-	ONLY_REF_SPLICE	YES	192	250	0.01	0.01	0.0136	0.0136	CHTOP->chr1:153606525-153618782:+,chromatin_target_of_PRMT1,NAMPT->chr7:105888731-105926772:-,nicotinamide_phosphoribosyltransferase	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1DP3--FRY	1	1	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0136	0.0136	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.0272	FALSE	18	26	2	21	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KDM5A--TTC17	1	1	KDM5A	10994	chr12:463242:-	TTC17	54162	chr11:43425548:+	ONLY_REF_SPLICE	NO	54	91	0.04	0.02	0.0136	0.0136	KDM5A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:389295-498620:-,lysine_demethylase_5A,TTC17->chr11:43380482-43516483:+,tetratricopeptide_repeat_domain_17	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0272	TRUE	0	0	0	1	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0136	0.0136	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0272	TRUE	477	1352	189	275	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIO--FAM105B	1	1	TRIO	38970	chr5:14420130:+	FAM105B	77981	chr5:14678790:+	ONLY_REF_SPLICE	YES	72	14	0.03	0.12	0.0136	0.0136	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,FAM105B->chr5:14664773-14699820:+	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.12	0.0272	TRUE	0	0	0	1	0	FALSE	ACH-000346
JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTLL3--SCIMP	1	1	TTLL3	4985	chr3:9855029:+	SCIMP	30587	chr17:5114250:-	ONLY_REF_SPLICE	YES	25	64	0.07	0.03	0.0136	0.0136	TTLL3->Oncogene{Bushman},chr3:9849770-9896822:+,tubulin_tyrosine_ligase_like_3,SCIMP->SLP_adaptor_and_CSK_interacting_membrane_protein,chr17:5112256-5138155:-	JVM3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.07	0.0272	TRUE	0	0	0	1	0	FALSE	ACH-000346
NCIH2085_LUNG	MT-TA--MT-TN	113	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9563	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2085_LUNG	1	1	0.9563	FALSE	369	2501	205	193	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND6--MT-TE	90	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7617	0.0508	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2085_LUNG	1	1	0.8125	FALSE	499	1288	110	792	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-TA--MT-TC	83	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7024	0.0592	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2085_LUNG	1	1	0.7616	FALSE	462	80	0	856	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	77	7	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4916	12	0.02	0.88	0.6517	0.0592	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0.02	0.88	0.7109	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	5	288	MT-ND4	1299	chrM:11058:+	MT-ND4L	5462	chrM:10553:+	INCL_NON_REF_SPLICE	YES	67	0	0.81	1	0.0423	2.4374	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.81	1	2.4797	FALSE	344	827	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	5	285	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	25	0	0.92	1	0.0423	2.412	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.92	1	2.4543	FALSE	344	827	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	5	283	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	23	0	0.93	1	0.0423	2.3951	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.93	1	2.4374	FALSE	344	827	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	4	284	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	29	0	0.91	1	0.0339	2.4035	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.91	1	2.4374	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	4	282	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	15	1	0.95	1	0.0339	2.3866	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.95	1	2.4205	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	3	285	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	25	0	0.92	1	0.0254	2.412	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.92	1	2.4374	FALSE	344	827	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	5	276	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	10	1	0.97	1	0.0423	2.3358	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.97	1	2.3781	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	5	275	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	13	0	0.96	1	0.0423	2.3274	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.96	1	2.3697	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	6	271	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	10	0	0.97	1	0.0508	2.2935	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.97	1	2.3443	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	3	281	MT-ND4	1149	chrM:10908:+	MT-ND4L	5493	chrM:10584:+	INCL_NON_REF_SPLICE	YES	15	1	0.95	1	0.0254	2.3781	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.95	1	2.4035	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	TIMM23B--LINC00843	69	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.584	0.11	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2085_LUNG	1	1	0.694	TRUE	508	994	45	981	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	3	276	MT-ND4	1148	chrM:10907:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	YES	14	0	0.95	1	0.0254	2.3358	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.95	1	2.3612	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	17	201	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	0	0.98	1	0.1439	1.7011	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.98	1	1.845	FALSE	344	821	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND1--MT-RNR2	58	8	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	NO	40	94	0.62	0.41	0.4909	0.0677	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2085_LUNG	0.41	0.62	0.5586	FALSE	92	22	4	61	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	55	1	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	8133	4	0.01	0.93	0.4655	0.0085	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0.01	0.93	0.474	FALSE	41	30	6	102	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	4	192	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	62	1	0.76	0.99	0.0339	1.6249	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.76	0.99	1.6588	FALSE	344	827	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	6	177	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	77	1	0.7	0.99	0.0508	1.498	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.7	0.99	1.5488	FALSE	344	827	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	PDE4D--ADAMTS6	43	11	PDE4D	46191	chr5:58284320:-	ADAMTS6	68741	chr5:64595958:-	ONLY_REF_SPLICE	YES	9	9	0.86	0.86	0.3639	0.0931	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,ADAMTS6->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_6,chr5:64444563-64777747:-	NCIH2085_LUNG	0.86	0.86	0.457	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	26	74	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	14593	0	0.01	1	0.22	0.6263	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.01	1	0.8463	FALSE	328	800	43	304	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	21	85	MT-CO3	1153	chrM:9359:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	6	9	0.95	0.92	0.1777	0.7194	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.92	0.95	0.8971	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	6	143	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	14	1	0.91	0.99	0.0508	1.2102	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.91	0.99	1.261	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	19	83	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	9	0.95	0.92	0.1608	0.7024	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.92	0.95	0.8632	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-TA--MT-TN	16	90	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1354	0.7617	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2085_LUNG	1	1	0.8971	FALSE	369	2501	205	193	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND6--MT-TE	31	26	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.2624	0.22	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2085_LUNG	0.95	1	0.4824	FALSE	499	1288	110	792	0	FALSE	ACH-000451
NCIH2085_LUNG	TIMM23--RP11-464F9.1	37	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	117	3	0.25	0.93	0.3131	0.0085	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2085_LUNG	0.25	0.93	0.3216	TRUE	519	3926	326	965	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	3	132	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	18	1	0.88	0.99	0.0254	1.1171	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.88	0.99	1.1425	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND6--MT-TE	33	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2793	0.0508	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2085_LUNG	1	1	0.3301	FALSE	499	1288	110	792	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	28	17	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	7	0	0.87	1	0.237	0.1439	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0.87	1	0.3809	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	10	83	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	9	0.95	0.91	0.0846	0.7024	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.91	0.95	0.787	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	9	84	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	34	0.99	0.73	0.0762	0.7109	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.73	0.99	0.7871	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	AL589743.1--RP11-536C10.17	29	3	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	9	0	0.78	1	0.2454	0.0254	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	NCIH2085_LUNG	0.78	1	0.2708	TRUE	0	33	0	45	33	FALSE	ACH-000451
NCIH2085_LUNG	AP000525.9--LA16c-60G3.6	29	3	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	6	0	0.84	1	0.2454	0.0254	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH2085_LUNG	0.84	1	0.2708	TRUE	0	42	0	133	42	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	8	86	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	4	74	0.96	0.56	0.0677	0.7278	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.56	0.96	0.7955	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	5	95	MT-ND4	1269	chrM:11028:+	MT-ND4L	5644	chrM:10735:+	INCL_NON_REF_SPLICE	YES	43	1	0.7	0.99	0.0423	0.804	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.7	0.99	0.8463	FALSE	344	827	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	4	98	MT-CO3	1222	chrM:9428:+	MT-ATP6	4744	chrM:8486:+	INCL_NON_REF_SPLICE	YES	6	0	0.94	1	0.0339	0.8294	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.94	1	0.8633	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	15	53	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10035	0	0.01	1	0.1269	0.4485	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.01	1	0.5754	FALSE	344	827	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	6	87	MT-CO3	1138	chrM:9344:+	MT-ATP6	5065	chrM:8807:+	INCL_NON_REF_SPLICE	YES	5	25	0.95	0.79	0.0508	0.7363	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.79	0.95	0.7871	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	7	83	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	2	8	0.98	0.92	0.0592	0.7024	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.92	0.98	0.7616	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-TA--MT-TN	20	31	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1693	0.2624	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2085_LUNG	1	1	0.4317	FALSE	369	2501	205	193	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	26	6	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7761	77	0	0.29	0.22	0.0508	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	0.29	0.2708	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	5	89	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	8	1	0.92	0.99	0.0423	0.7532	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.92	0.99	0.7955	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	3	92	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	4	64	0.96	0.6	0.0254	0.7786	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.6	0.96	0.804	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	4	87	MT-CO3	1138	chrM:9344:+	MT-ATP6	4905	chrM:8647:+	INCL_NON_REF_SPLICE	YES	5	18	0.95	0.83	0.0339	0.7363	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.83	0.95	0.7702	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	5	82	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	9	0.99	0.91	0.0423	0.694	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.91	0.99	0.7363	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-TA--MT-TN	14	46	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1185	0.3893	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2085_LUNG	1	1	0.5078	FALSE	369	2501	205	193	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	12	53	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1038	0	0.06	1	0.1016	0.4485	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.06	1	0.5501	FALSE	344	827	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-TA--MT-TN	11	57	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0931	0.4824	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2085_LUNG	1	1	0.5755	FALSE	369	2501	205	193	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	3	88	MT-CO3	1637	chrM:9843:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	2	8	0.98	0.92	0.0254	0.7448	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.92	0.98	0.7702	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	3	88	MT-CO3	1153	chrM:9359:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	6	16	0.94	0.85	0.0254	0.7448	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.85	0.94	0.7702	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	3	86	MT-CO3	1138	chrM:9344:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	5	16	0.95	0.85	0.0254	0.7278	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.85	0.95	0.7532	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND6--MT-TE	16	34	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1354	0.2877	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2085_LUNG	1	1	0.4231	FALSE	499	1288	110	792	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	6	73	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	915	0	0.08	1	0.0508	0.6178	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.08	1	0.6686	FALSE	344	827	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	3	84	MT-CO3	1090	chrM:9296:+	MT-ATP6	5120	chrM:8862:+	INCL_NON_REF_SPLICE	YES	1	18	0.99	0.83	0.0254	0.7109	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.83	0.99	0.7363	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	3	83	MT-CO3	1123	chrM:9329:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	9	0.97	0.91	0.0254	0.7024	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.91	0.97	0.7278	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	6	70	MT-ND4	1201	chrM:10960:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	30	0	0.72	1	0.0508	0.5924	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.72	1	0.6432	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	4	76	MT-CO3	1072	chrM:9278:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	1	27	0.99	0.75	0.0339	0.6432	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.75	0.99	0.6771	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND6--MT-TE	13	40	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.11	0.3385	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2085_LUNG	0.95	1	0.4485	FALSE	499	1288	110	792	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	3	77	MT-ND4	1125	chrM:10884:+	MT-ND4L	5651	chrM:10742:+	INCL_NON_REF_SPLICE	YES	14	1	0.85	0.99	0.0254	0.6517	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.85	0.99	0.6771	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	8	53	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	575	0	0.1	1	0.0677	0.4485	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.1	1	0.5162	FALSE	344	827	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	9	47	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	26	0	0.68	1	0.0762	0.3978	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.68	1	0.474	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	3	70	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	28	0	0.72	1	0.0254	0.5924	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.72	1	0.6178	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	PPIL2--CCK	18	9	PPIL2	13661	chr22:22035679:+	CCK	31550	chr3:42306929:-	ONLY_REF_SPLICE	YES	34	11	0.44	0.71	0.1523	0.0762	PPIL2->chr22:22006559-22054304:+,peptidylprolyl_isomerase_like_2,CCK->cholecystokinin,chr3:42299317-42307699:-	NCIH2085_LUNG	0.44	0.71	0.2285	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	3	67	MT-CO3	1061	chrM:9267:+	MT-ATP6	5343	chrM:9085:+	INCL_NON_REF_SPLICE	YES	1	7	0.99	0.91	0.0254	0.567	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.91	0.99	0.5924	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	3	65	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	1	1	0.99	0.99	0.0254	0.5501	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.99	0.99	0.5755	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	6	52	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	27	0	0.68	1	0.0508	0.4401	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.68	1	0.4909	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	ABHD12--SCFD2	17	4	ABHD12	12816	chr20:25287469:-	SCFD2	24343	chr4:54179930:-	ONLY_REF_SPLICE	YES	94	50	0.18	0.3	0.1439	0.0339	ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-,SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2	NCIH2085_LUNG	0.18	0.3	0.1778	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	MT-TA--MT-TN	18	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1523	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2085_LUNG	1	1	0.1523	FALSE	369	2501	205	193	0	FALSE	ACH-000451
NCIH2085_LUNG	CDC42BPA--TP53BP2	15	11	CDC42BPA	2470	chr1:227504706:-	TP53BP2	56709	chr1:224009069:-	ONLY_REF_SPLICE	YES	26	28	0.5	0.48	0.1269	0.0931	CDC42BPA->CDC42_binding_protein_kinase_alpha,chr1:227177566-227506175:-,TP53BP2->Oncogene{Bushman},chr1:223967601-224033674:-,tumor_protein_p53_binding_protein_2	NCIH2085_LUNG	0.48	0.5	0.22	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	MT-TA--MT-TC	17	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1439	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2085_LUNG	1	1	0.1439	FALSE	462	80	0	856	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	4	51	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	18	0	0.75	1	0.0339	0.4316	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.75	1	0.4655	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	7	39	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	4	1	0.92	0.98	0.0592	0.3301	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.92	0.98	0.3893	FALSE	344	821	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	16	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1354	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	1	1	0.1354	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	16	0	MT-ND4	1003	chrM:10762:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1354	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	1	1	0.1354	FALSE	344	821	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-TA--MT-TN	16	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1354	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2085_LUNG	1	1	0.1354	FALSE	369	2501	205	193	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-TC--MT-TY	3	51	MT-TC	1061	chrM:5766:-	MT-TY	4075	chrM:5883:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0.4316	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH2085_LUNG	1	1	0.457	FALSE	51	280	19	36	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	3	50	MT-CO3	1188	chrM:9394:+	MT-ATP6	5390	chrM:9132:+	INCL_NON_REF_SPLICE	YES	8	1	0.87	0.98	0.0254	0.4232	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.87	0.98	0.4486	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-TA--MT-TN	9	26	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0762	0.22	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2085_LUNG	1	1	0.2962	FALSE	369	2501	205	193	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-TC--MT-TY	15	1	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1269	0.0085	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH2085_LUNG	1	1	0.1354	FALSE	51	280	19	36	0	FALSE	ACH-000451
NCIH2085_LUNG	ARF3--WNT1	14	4	ARF3	1242	chr12:49351093:-	WNT1	15684	chr12:49374207:+	ONLY_REF_SPLICE	YES	87	8	0.17	0.69	0.1185	0.0339	LOCAL_INVERSION:-:+:[21064],ARF3->ADP_ribosylation_factor_3,chr12:49329506-49351334:-,WNT1->Oncogene{Bushman},Wnt_family_member_1,chr12:49372398-49375459:+	NCIH2085_LUNG	0.17	0.69	0.1524	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	14	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	6	0	0.74	1	0.1185	0.0254	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.74	1	0.1439	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	PBX1--OLFML2B	14	3	PBX1	4894	chr1:164532548:+	OLFML2B	54847	chr1:161976263:-	ONLY_REF_SPLICE	YES	15	2	0.53	0.89	0.1185	0.0254	PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1,OLFML2B->chr1:161952982-161993644:-,olfactomedin_like_2B	NCIH2085_LUNG	0.53	0.89	0.1439	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	8	26	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	28	0	0.55	1	0.0677	0.22	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.55	1	0.2877	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-TA--MT-TN	3	46	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0.3893	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2085_LUNG	1	1	0.4147	FALSE	369	2501	205	193	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND6--MT-TE	4	40	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	7	0	0.86	1	0.0339	0.3385	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2085_LUNG	0.86	1	0.3724	FALSE	499	1288	110	792	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	7	27	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	62	0	0.35	1	0.0592	0.2285	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.35	1	0.2877	FALSE	344	827	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	HHAT--PLXNA2	13	1	HHAT	14836	chr1:210797014:+	PLXNA2	55860	chr1:208202387:-	ONLY_REF_SPLICE	YES	16	19	0.47	0.42	0.11	0.0085	HHAT->chr1:210501596-210849638:+,hedgehog_acyltransferase,PLXNA2->chr1:208195587-208417665:-,plexin_A2	NCIH2085_LUNG	0.42	0.47	0.1185	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	MT-TA--MT-TC	12	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1016	0.0423	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2085_LUNG	1	1	0.1439	FALSE	462	80	0	856	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	6	28	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	5	0	0.87	1	0.0508	0.237	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.87	1	0.2878	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-TA--MT-TN	3	40	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0.3385	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2085_LUNG	1	1	0.3639	FALSE	369	2501	205	193	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	6	26	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0508	0.22	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.94	1	0.2708	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND6--MT-TE	12	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1016	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2085_LUNG	1	1	0.1016	FALSE	499	1288	110	792	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-TA--MT-TN	12	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1016	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2085_LUNG	1	1	0.1016	FALSE	369	2501	205	193	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	3	35	MT-CO3	1020	chrM:9226:+	MT-ATP6	5185	chrM:8927:+	INCL_NON_REF_SPLICE	YES	0	79	1	0.32	0.0254	0.2962	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.32	1	0.3216	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	5	27	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	62	0	0.34	1	0.0423	0.2285	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.34	1	0.2708	FALSE	344	827	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND6--MT-TE	5	26	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0423	0.22	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2085_LUNG	0.91	1	0.2623	FALSE	499	1288	110	792	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	11	0	MT-CO3	1032	chrM:9238:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0931	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	1	1	0.0931	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	9	5	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	8	0	0.64	1	0.0762	0.0423	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.64	1	0.1185	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-TA--MT-TN	10	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0846	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2085_LUNG	1	1	0.0846	FALSE	369	2501	205	193	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	3	26	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	30	0	0.49	1	0.0254	0.22	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.49	1	0.2454	FALSE	344	826	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	6	13	MT-ND5	2794	chrM:14130:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	12	1	0.61	0.0508	0.11	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0.61	1	0.1608	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0762	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2085_LUNG	1	1	0.0762	FALSE	13	9	0	364	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND6--MT-TE	4	20	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0.1693	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2085_LUNG	1	1	0.2032	FALSE	499	1288	110	792	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	4	19	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0339	0.1608	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.92	1	0.1947	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	7	7	MT-ND5	2303	chrM:13639:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3929	12	0	0.54	0.0592	0.0592	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	0.54	0.1184	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	7	6	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.93	0.0592	0.0508	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.93	1	0.11	FALSE	344	821	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	3	22	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0.1862	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	1	1	0.2116	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	SYT14--MROH9	8	2	SYT14	6138	chr1:210194599:+	MROH9	25025	chr1:170931031:+	ONLY_REF_SPLICE	YES	12	0	0.45	1	0.0677	0.0169	SYT14->chr1:210111538-210337636:+,synaptotagmin_14,MROH9->chr1:170904612-171033906:+,maestro_heat_like_repeat_family_member_9	NCIH2085_LUNG	0.45	1	0.0846	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	MT-ND1--MT-RNR2	6	8	MT-ND1	1207	chrM:3513:+	MT-RNR2	5683	chrM:2397:+	INCL_NON_REF_SPLICE	NO	1	10104	0.93	0	0.0508	0.0677	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2085_LUNG	0	0.93	0.1185	FALSE	120	26	5	87	0	FALSE	ACH-000451
NCIH2085_LUNG	PPIL2--CCK	5	12	PPIL2	13661	chr22:22035679:+	CCK	31062	chr3:42307417:-	INCL_NON_REF_SPLICE	YES	34	22	0.33	0.44	0.0423	0.1016	PPIL2->chr22:22006559-22054304:+,peptidylprolyl_isomerase_like_2,CCK->cholecystokinin,chr3:42299317-42307699:-	NCIH2085_LUNG	0.33	0.44	0.1439	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	PPIL2--CCK	5	12	PPIL2	13661	chr22:22035679:+	CCK	31073	chr3:42307406:-	INCL_NON_REF_SPLICE	YES	34	25	0.33	0.4	0.0423	0.1016	PPIL2->chr22:22006559-22054304:+,peptidylprolyl_isomerase_like_2,CCK->cholecystokinin,chr3:42299317-42307699:-	NCIH2085_LUNG	0.33	0.4	0.1439	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	7	3	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	3	1	0.77	0.91	0.0592	0.0254	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.77	0.91	0.0846	FALSE	344	821	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	5	8	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	5	0	0.72	1	0.0423	0.0677	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.72	1	0.11	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND1--MT-RNR2	5	8	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	10	0	0.57	1	0.0423	0.0677	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2085_LUNG	0.57	1	0.11	FALSE	114	26	4	85	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	7	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	1	1	0.0592	FALSE	344	821	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	5	8	MT-ND5	2112	chrM:13448:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	7761	0	0	1	0.0423	0.0677	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	1	0.11	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	6	4	MT-ND5	1908	chrM:13244:+	MT-ATP8	5957	chrM:8510:+	INCL_NON_REF_SPLICE	YES	6976	1839	0	0.01	0.0508	0.0339	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	0.01	0.0847	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	3	16	MT-ND5	2712	chrM:14048:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	17	0	0.53	1	0.0254	0.1354	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0.53	1	0.1608	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0592	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2085_LUNG	1	1	0.0592	FALSE	292	1546	117	613	0	FALSE	ACH-000451
NCIH2085_LUNG	ACTN4--MT-CO1	4	11	ACTN4	20880	chr19:39220385:+	MT-CO1	26249	chrM:6434:+	INCL_NON_REF_SPLICE	NO	1013	10634	0.01	0	0.0339	0.0931	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2085_LUNG	0	0.01	0.127	FALSE	0	0	0	3	0	FALSE	ACH-000451
NCIH2085_LUNG	C15orf57--CBX3	6	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	19	43	0.32	0.17	0.0508	0.0254	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2085_LUNG	0.17	0.32	0.0762	TRUE	267	562	48	632	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	6	3	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	8	0	0.53	1	0.0508	0.0254	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.53	1	0.0762	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	5	7	MT-ND5	2339	chrM:13675:+	MT-ATP8	5910	chrM:8463:+	INCL_NON_REF_SPLICE	YES	4055	5	0	0.71	0.0423	0.0592	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	0.71	0.1015	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	5	5	MT-ND5	1828	chrM:13164:+	MT-ATP8	5867	chrM:8420:+	INCL_NON_REF_SPLICE	YES	5320	0	0	1	0.0423	0.0423	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	1	0.0846	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	RP11-494M8.4--OVCH2	6	1	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0508	0.0085	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	NCIH2085_LUNG	0.88	1	0.0593	FALSE	32	0	0	22	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND1--MT-RNR2	4	8	MT-ND1	1027	chrM:3333:+	MT-RNR2	6484	chrM:3198:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0339	0.0677	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2085_LUNG	1	1	0.1016	FALSE	92	21	4	61	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	3	12	MT-ND5	2355	chrM:13691:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	3850	0	0	1	0.0254	0.1016	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	1	0.127	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0508	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2085_LUNG	1	1	0.0508	FALSE	499	1288	110	792	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-TC--MT-TY	6	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0508	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH2085_LUNG	1	1	0.0508	FALSE	51	280	19	36	0	FALSE	ACH-000451
NCIH2085_LUNG	RP11-123O10.4--GRIP1	6	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0508	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2085_LUNG	1	1	0.0508	FALSE	416	2512	207	587	0	FALSE	ACH-000451
NCIH2085_LUNG	RP11-96H19.1--RP11-446N19.1	5	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.0423	0.0339	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2085_LUNG	0.75	1	0.0762	FALSE	407	2205	196	549	0	FALSE	ACH-000451
NCIH2085_LUNG	WDR27--NPIPB4	6	0	WDR27	31192	chr6:169972515:-	NPIPB4	42153	chr16:21875166:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0508	0	WDR27->WD_repeat_domain_27,chr6:169857307-170102159:-,NPIPB4->chr16:21845890-21892148:-,nuclear_pore_complex_interacting_protein_family_member_B4	NCIH2085_LUNG	1	1	0.0508	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	NRIP1--AF127936.7	5	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.62	1	0.0423	0.0254	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2085_LUNG	0.62	1	0.0677	FALSE	125	705	46	456	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	3	10	MT-ND5	2243	chrM:13579:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	4916	0	0	1	0.0254	0.0846	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	1	0.11	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	5	2	MT-ND5	1575	chrM:12911:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6007	77	0	0.08	0.0423	0.0169	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	0.08	0.0592	FALSE	42	36	7	104	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	3	10	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	3901	0	0	1	0.0254	0.0846	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	1	0.11	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	ACTN4--MT-CO1	3	9	ACTN4	15652	chr19:39214946:+	MT-CO1	26380	chrM:6565:+	INCL_NON_REF_SPLICE	YES	1532	25620	0.01	0	0.0254	0.0762	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2085_LUNG	0	0.01	0.1016	FALSE	0	0	0	30	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	4	5	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.0339	0.0423	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.64	1	0.0762	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	5	1	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0423	0.0085	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.86	1	0.0508	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	4	5	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	4	1	0.69	0.9	0.0339	0.0423	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.69	0.9	0.0762	FALSE	344	821	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	3	9	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	7	590	0.63	0.02	0.0254	0.0762	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0.02	0.63	0.1016	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	3	9	MT-ND5	2181	chrM:13517:+	MT-ATP8	5878	chrM:8431:+	INCL_NON_REF_SPLICE	YES	5841	0	0	1	0.0254	0.0762	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	1	0.1016	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	PRR16--CTD-2334D19.1	4	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	13	1	0.41	0.9	0.0339	0.0423	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH2085_LUNG	0.41	0.9	0.0762	FALSE	56	216	12	147	0	FALSE	ACH-000451
NCIH2085_LUNG	AP000525.9--LA16c-60G3.6	5	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH2085_LUNG	1	1	0.0423	TRUE	0	5	0	18	5	TRUE	ACH-000451
NCIH2085_LUNG	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2085_LUNG	1	1	0.0423	FALSE	13	9	0	364	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND1--MT-RNR2	3	8	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	8	9336	0.58	0	0.0254	0.0677	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2085_LUNG	0	0.58	0.0931	FALSE	120	26	5	87	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND1--MT-RNR2	3	8	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	9	0	0.55	1	0.0254	0.0677	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2085_LUNG	0.55	1	0.0931	FALSE	114	26	4	85	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	3	8	MT-ND5	2030	chrM:13366:+	MT-ATP8	5838	chrM:8391:+	INCL_NON_REF_SPLICE	YES	6905	0	0	1	0.0254	0.0677	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	1	0.0931	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2085_LUNG	1	1	0.0423	FALSE	499	1288	110	792	0	FALSE	ACH-000451
NCIH2085_LUNG	PPIL2--CCK	3	8	PPIL2	12569	chr22:22029404:+	CCK	31550	chr3:42306929:-	ONLY_REF_SPLICE	YES	68	11	0.14	0.5	0.0254	0.0677	PPIL2->chr22:22006559-22054304:+,peptidylprolyl_isomerase_like_2,CCK->cholecystokinin,chr3:42299317-42307699:-	NCIH2085_LUNG	0.14	0.5	0.0931	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	PPIL2--CCK	5	0	PPIL2	12569	chr22:22029404:+	CCK	33355	chr3:42305124:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	PPIL2->chr22:22006559-22054304:+,peptidylprolyl_isomerase_like_2,CCK->cholecystokinin,chr3:42299317-42307699:-	NCIH2085_LUNG	1	1	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	3	7	MT-CO3	1005	chrM:9211:+	MT-ATP6	5314	chrM:9056:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.53	0.0254	0.0592	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.53	1	0.0846	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	3	7	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.53	0.0254	0.0592	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.53	1	0.0846	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	4	3	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.0339	0.0254	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.7	1	0.0593	FALSE	344	821	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND4--MT-ND4L	4	3	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	3	1	0.7	0.88	0.0339	0.0254	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2085_LUNG	0.7	0.88	0.0593	FALSE	344	821	44	306	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	3	7	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	5538	1	0	0.91	0.0254	0.0592	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	0.91	0.0846	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	3	7	MT-ND5	2303	chrM:13639:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3929	77	0	0.11	0.0254	0.0592	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	0.11	0.0846	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0339	0.0254	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2085_LUNG	0.7	1	0.0593	FALSE	515	4851	409	746	0	FALSE	ACH-000451
NCIH2085_LUNG	ABHD12--SCFD2	4	2	ABHD12	12816	chr20:25287469:-	SCFD2	25471	chr4:54140168:-	ONLY_REF_SPLICE	YES	94	47	0.06	0.11	0.0339	0.0169	ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-,SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2	NCIH2085_LUNG	0.06	0.11	0.0508	TRUE	0	0	0	1	0	FALSE	ACH-000451
NCIH2085_LUNG	FXR1--SOX2-OT	4	2	FXR1	13451	chr3:180671628:+	SOX2-OT	39461	chr3:180893302:+	ONLY_REF_SPLICE	YES	130	0	0.04	1	0.0339	0.0169	NEIGHBORS[7017],FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	NCIH2085_LUNG	0.04	1	0.0508	FALSE	0	0	0	1	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	4	2	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	6	0	0.5	1	0.0339	0.0169	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.5	1	0.0508	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	3	6	MT-ND5	1823	chrM:13159:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	5169	0	0	1	0.0254	0.0508	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	1	0.0762	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	3	5	MT-ND5	1635	chrM:12971:+	MT-ATP8	5887	chrM:8440:+	INCL_NON_REF_SPLICE	YES	6219	0	0	1	0.0254	0.0423	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	1	0.0677	FALSE	42	36	7	104	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	3	5	MT-ND5	1969	chrM:13305:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	NO	6731	590	0	0.01	0.0254	0.0423	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	0.01	0.0677	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	ARF3--WNT1	3	4	ARF3	1242	chr12:49351093:-	WNT1	14728	chr12:49373251:+	ONLY_REF_SPLICE	YES	87	1	0.07	0.88	0.0254	0.0339	LOCAL_INVERSION:-:+:[21064],ARF3->ADP_ribosylation_factor_3,chr12:49329506-49351334:-,WNT1->Oncogene{Bushman},Wnt_family_member_1,chr12:49372398-49375459:+	NCIH2085_LUNG	0.07	0.88	0.0593	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	1	1	0.0339	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	3	4	MT-ND5	1807	chrM:13143:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	4940	779	0	0.01	0.0254	0.0339	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	0.01	0.0593	FALSE	43	37	8	105	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2085_LUNG	1	1	0.0339	FALSE	499	1288	110	792	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-TA--MT-TN	4	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2085_LUNG	1	1	0.0339	FALSE	369	2501	205	193	0	FALSE	ACH-000451
NCIH2085_LUNG	NRIP1--AF127936.7	3	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0254	0.0339	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2085_LUNG	0.64	1	0.0593	FALSE	164	806	69	479	0	FALSE	ACH-000451
NCIH2085_LUNG	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0.0339	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2085_LUNG	1	1	0.0593	FALSE	192	492	57	212	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	3	3	MT-CO3	1158	chrM:9364:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	7	0	0.46	1	0.0254	0.0254	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.46	1	0.0508	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	RP11-680G10.1--GSE1	3	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	15	1	0.29	0.0254	0.0254	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2085_LUNG	0.29	1	0.0508	TRUE	458	1351	185	561	0	FALSE	ACH-000451
NCIH2085_LUNG	CCDC122--ENOX1	3	2	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	29	1	0.15	0.83	0.0254	0.0169	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	NCIH2085_LUNG	0.15	0.83	0.0423	FALSE	39	52	2	34	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-CO3--MT-ATP6	3	2	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	8	0	0.38	1	0.0254	0.0169	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2085_LUNG	0.38	1	0.0423	FALSE	189	492	56	216	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND5--MT-ATP8	3	1	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8216	77	0	0.05	0.0254	0.0085	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2085_LUNG	0	0.05	0.0339	FALSE	41	30	6	102	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND6--MT-TE	3	1	MT-ND6	1027	chrM:14647:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0.0085	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2085_LUNG	1	1	0.0339	FALSE	499	1288	110	792	0	FALSE	ACH-000451
NCIH2085_LUNG	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	52	0.5	0.07	0.0254	0.0085	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2085_LUNG	0.07	0.5	0.0339	FALSE	16	356	14	466	0	FALSE	ACH-000451
NCIH2085_LUNG	RP11-155G15.2--RP11-1E3.1	3	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0254	0.0085	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH2085_LUNG	1	1	0.0339	FALSE	46	201	11	112	0	FALSE	ACH-000451
NCIH2085_LUNG	FN1--MT-ND5	3	0	FN1	14729	chr2:216279628:-	MT-ND5	55653	chrM:13054:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH2085_LUNG	1	1	0.0254	FALSE	0	0	0	2	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1027	chrM:14647:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2085_LUNG	1	1	0.0254	FALSE	499	1288	110	792	0	FALSE	ACH-000451
NCIH2085_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2085_LUNG	1	1	0.0254	FALSE	499	1288	110	792	0	FALSE	ACH-000451
NCIH2085_LUNG	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0254	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH2085_LUNG	1	1	0.0254	TRUE	22	156	2	142	0	FALSE	ACH-000451
NCIH2085_LUNG	PBX1--OLFML2B	2	3	PBX1	23014	chr1:164742259:+	OLFML2B	54847	chr1:161976263:-	ONLY_REF_SPLICE	YES	22	2	0.19	0.71	0.0169	0.0254	PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1,OLFML2B->chr1:161952982-161993644:-,olfactomedin_like_2B	NCIH2085_LUNG	0.19	0.71	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	PBX1--OLFML2B	2	3	PBX1	10299	chr1:164595333:+	OLFML2B	54847	chr1:161976263:-	ONLY_REF_SPLICE	YES	22	2	0.19	0.71	0.0169	0.0254	PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1,OLFML2B->chr1:161952982-161993644:-,olfactomedin_like_2B	NCIH2085_LUNG	0.19	0.71	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	PRR16--CTD-2334D19.1	1	5	PRR16	5763	chr5:119952887:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	NO	16	1	0.27	0.86	0.0085	0.0423	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH2085_LUNG	0.27	0.86	0.0508	FALSE	0	3	0	8	0	FALSE	ACH-000451
NCIH2085_LUNG	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	23	1	0.12	0.0169	0.0085	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2085_LUNG	0.12	1	0.0254	TRUE	465	1949	224	605	0	FALSE	ACH-000451
NCIH2085_LUNG	ABHD12--SCFD2	2	0	ABHD12	11242	chr20:25289093:-	SCFD2	24343	chr4:54179930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-,SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2	NCIH2085_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	AK4--ZNF529	2	0	AK4	1117	chr1:65613348:+	ZNF529	25876	chr19:37047099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	AK4->adenylate_kinase_4,chr1:65613232-65697828:+,ZNF529->chr19:37025676-37096178:-,zinc_finger_protein_529	NCIH2085_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	COL5A1--EHMT1	2	0	COL5A1	7112	chr9:137593179:+	EHMT1	108154	chr9:140728801:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1,EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1	NCIH2085_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	FUS--GNAS	2	0	FUS	1118	chr16:31191548:+	GNAS	30364	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH2085_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	KIAA1731--WHSC1	2	0	KIAA1731	21008	chr11:93454578:+	WHSC1	69140	chr4:1976590:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	KIAA1731->chr11:93394805-93463522:+,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH2085_LUNG	1	1	0.0169	TRUE	0	0	0	2	0	TRUE	ACH-000451
NCIH2085_LUNG	PEG10--C18orf8	2	0	PEG10	1256	chr7:94285892:+	C18orf8	12492	chr18:21084335:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	PEG10->Oncogene{Bushman},chr7:94285637-94299007:+,paternally_expressed_10,C18orf8->chr18:21083473-21111746:+,chromosome_18_open_reading_frame_8	NCIH2085_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	RP11-494M8.4--OVCH2	2	0	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	NCIH2085_LUNG	1	1	0.0169	FALSE	60	13	8	23	0	FALSE	ACH-000451
NCIH2085_LUNG	RRAGB--MKI67	2	0	RRAGB	1681	chrX:55744852:+	MKI67	19633	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	RRAGB->Ras_related_GTP_binding_B,chrX:55744172-55785207:+,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	NCIH2085_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	XRCC6--RBX1	2	0	XRCC6	1968	chr22:42018090:+	RBX1	19595	chr22:41360051:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+,RBX1->Oncogene{Bushman},chr22:41347351-41369313:+,ring-box_1	NCIH2085_LUNG	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000451
NCIH2085_LUNG	ABHD12--SCFD2	1	3	ABHD12	11733	chr20:25288602:-	SCFD2	24343	chr4:54179930:-	ONLY_REF_SPLICE	YES	126	50	0.03	0.07	0.0085	0.0254	ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-,SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2	NCIH2085_LUNG	0.03	0.07	0.0339	TRUE	0	0	0	1	0	FALSE	ACH-000451
NCIH2085_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0085	0.0254	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2085_LUNG	1	1	0.0339	FALSE	467	2173	244	435	0	FALSE	ACH-000451
NCIH2085_LUNG	CDC42BPA--TP53BP2	1	2	CDC42BPA	2470	chr1:227504706:-	TP53BP2	59140	chr1:224002055:-	ONLY_REF_SPLICE	NO	26	62	0.1	0.05	0.0085	0.0169	CDC42BPA->CDC42_binding_protein_kinase_alpha,chr1:227177566-227506175:-,TP53BP2->Oncogene{Bushman},chr1:223967601-224033674:-,tumor_protein_p53_binding_protein_2	NCIH2085_LUNG	0.05	0.1	0.0254	TRUE	0	0	0	1	0	FALSE	ACH-000451
NCIH2085_LUNG	FXR1--SOX2-OT	1	2	FXR1	12372	chr3:180669256:+	SOX2-OT	39461	chr3:180893302:+	ONLY_REF_SPLICE	YES	145	0	0.02	1	0.0085	0.0169	NEIGHBORS[7017],FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	NCIH2085_LUNG	0.02	1	0.0254	FALSE	0	0	0	1	0	FALSE	ACH-000451
NCIH2085_LUNG	RP11-114H23.1--RP11-114H23.2	1	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0085	0.0169	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH2085_LUNG	1	1	0.0254	FALSE	81	155	12	160	0	FALSE	ACH-000451
NCIH2085_LUNG	ADAM9--TACC1	1	1	ADAM9	1292	chr8:38854679:+	TACC1	41335	chr8:38677040:+	ONLY_REF_SPLICE	YES	917	112	0	0.02	0.0085	0.0085	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,TACC1->Oncogene{Bushman},chr8:38585704-38710546:+,transforming_acidic_coiled-coil_containing_protein_1	NCIH2085_LUNG	0	0.02	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000451
NCIH2085_LUNG	PILRB--GATS	1	1	PILRB	14284	chr7:99957160:+	GATS	21152	chr7:99831297:-	ONLY_REF_SPLICE	YES	184	19	0.01	0.1	0.0085	0.0085	GTEx&tcga_normals:22/3694=0.60%,GTEx_FI:{Muscle=[count:2=pct:0.9],Brain=[count:1=pct:0.2]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellum=1},LOCAL_INVERSION:+:-,chr7:[63900],PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta,GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-	NCIH2085_LUNG	0.01	0.1	0.017	FALSE	0	0	0	1	0	FALSE	ACH-000451
NCIH2085_LUNG	PPP1R12C--CNN2	1	1	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	75	404	0.03	0	0.0085	0.0085	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	NCIH2085_LUNG	0	0.03	0.017	FALSE	35	34	3	30	0	FALSE	ACH-000451
NCIH2085_LUNG	SDC2--ODF1	1	1	SDC2	9870	chr8:97605819:+	ODF1	19919	chr8:103572680:+	ONLY_REF_SPLICE	YES	84	0	0.02	1	0.0085	0.0085	SDC2->chr8:97505579-97624000:+,syndecan_2,ODF1->chr8:103563800-103573245:+,outer_dense_fiber_of_sperm_tails_1	NCIH2085_LUNG	0.02	1	0.017	TRUE	0	0	0	1	0	FALSE	ACH-000451
NCIH2085_LUNG	TFDP1--TMCO3	1	1	TFDP1	4660	chr13:114277601:+	TMCO3	27902	chr13:114193672:+	ONLY_REF_SPLICE	YES	188	123	0.01	0.02	0.0085	0.0085	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[34471],TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	NCIH2085_LUNG	0.01	0.02	0.017	FALSE	0	2	0	2	0	FALSE	ACH-000451
NCIH2085_LUNG	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0085	0.0085	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2085_LUNG	0.67	1	0.017	TRUE	62	24	1	171	0	FALSE	ACH-000451
SW1463_LARGE_INTESTINE	RPL36AL--LRR1	14	0	RPL36AL	1124	chr14:50087280:-	LRR1	11378	chr14:50074118:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3224	0	LOCAL_INVERSION:-:+:[3847],RPL36AL->chr14:50085237-50087403:-,ribosomal_protein_L36a_like,LRR1->chr14:50065415-50081390:+,leucine_rich_repeat_protein_1	SW1463_LARGE_INTESTINE	1	1	0.3224	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	MT-ND6--MT-ND5	11	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2533	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SW1463_LARGE_INTESTINE	1	1	0.2533	FALSE	101	855	57	72	0	FALSE	ACH-000470
SW1463_LARGE_INTESTINE	LRR1--RPL36AL	7	7	LRR1	4564	chr14:50069186:+	RPL36AL	14048	chr14:50085858:-	ONLY_REF_SPLICE	YES	9	1	0.61	0.93	0.1612	0.1612	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_INVERSION:+:-:[3847],LRR1->chr14:50065415-50081390:+,leucine_rich_repeat_protein_1,RPL36AL->chr14:50085237-50087403:-,ribosomal_protein_L36a_like	SW1463_LARGE_INTESTINE	0.61	0.93	0.3224	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	ARHGAP35--VRK3	5	1	ARHGAP35	5826	chr19:47440665:+	VRK3	27849	chr19:50504111:-	ONLY_REF_SPLICE	YES	6	11	0.5	0.35	0.1151	0.023	{Klijn_CCL:Colo-Rectal=1},ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,VRK3->chr19:50479724-50529203:-,vaccinia_related_kinase_3	SW1463_LARGE_INTESTINE	0.35	0.5	0.1381	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	TIMM23B--LINC00843	5	1	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1151	0.023	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SW1463_LARGE_INTESTINE	1	1	0.1381	TRUE	508	994	45	981	0	FALSE	ACH-000470
SW1463_LARGE_INTESTINE	MT-ND6--MT-ND5	4	1	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	402	1	0.01	0.0921	0.023	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SW1463_LARGE_INTESTINE	0.01	1	0.1151	FALSE	101	855	57	72	0	FALSE	ACH-000470
SW1463_LARGE_INTESTINE	MT-ND6--MT-ND5	4	1	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	467	1	0.01	0.0921	0.023	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SW1463_LARGE_INTESTINE	0.01	1	0.1151	FALSE	101	855	57	72	0	FALSE	ACH-000470
SW1463_LARGE_INTESTINE	ATP5A1--SNTG1	4	0	ATP5A1	3379	chr18:43678138:-	SNTG1	27137	chr8:51306772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0921	0	ATP5A1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_alpha_subunit_1,_cardiac_muscle,chr18:43664110-43684300:-,SNTG1->chr8:50822349-51706678:+,syntrophin_gamma_1	SW1463_LARGE_INTESTINE	1	1	0.0921	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	BTG3--CXADR	4	0	BTG3	8732	chr21:18966052:-	CXADR	24967	chr21:18965856:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0921	0	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},LOCAL_INVERSION:-:+:[74],BTG3->BTG_family_member_3,chr21:18965971-18985265:-,CXADR->chr21:18884700-18965897:+,coxsackie_virus_and_adenovirus_receptor	SW1463_LARGE_INTESTINE	1	1	0.0921	TRUE	1	0	0	2	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	MAPKAPK3--SLC5A6	4	0	MAPKAPK3	13146	chr3:50686144:+	SLC5A6	28019	chr2:27422750:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0921	0	MAPKAPK3->chr3:50648951-50686720:+,mitogen-activated_protein_kinase-activated_protein_kinase_3,SLC5A6->chr2:27422455-27435826:-,solute_carrier_family_5_member_6	SW1463_LARGE_INTESTINE	1	1	0.0921	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	TRABD--KDM2B	4	0	TRABD	1062	chr22:50624405:+	KDM2B	36576	chr12:121891147:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0921	0	TRABD->TraB_domain_containing,chr22:50624344-50638027:+,KDM2B->Oncogene{Bushman},chr12:121866900-122018920:-,lysine_demethylase_2B	SW1463_LARGE_INTESTINE	1	1	0.0921	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	MT-ND6--MT-ND5	3	1	MT-ND6	1430	chrM:14244:-	MT-ND5	6149	chrM:13960:+	INCL_NON_REF_SPLICE	YES	3	466	0.57	0.01	0.0691	0.023	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SW1463_LARGE_INTESTINE	0.01	0.57	0.0921	FALSE	101	855	57	72	0	FALSE	ACH-000470
SW1463_LARGE_INTESTINE	ATP6C--SET	3	0	ATP6C	1218	chr16:2564183:+	SET	11413	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0691	0	ATP6C->chr16:2563966-2577956:+,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	DCTN5--RNF114	3	0	DCTN5	11441	chr16:23680111:+	RNF114	17795	chr20:48561895:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0691	0	DCTN5->chr16:23652713-23681195:+,dynactin_subunit_5,RNF114->chr20:48552948-48570429:+,ring_finger_protein_114	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	EIF3E--SLC45A4	3	0	EIF3E	17093	chr8:109240496:-	SLC45A4	29280	chr8:142264728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0691	0	EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E,SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	FKBP4--FTL	3	0	FKBP4	5182	chr12:2908300:+	FTL	14012	chr19:49468667:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0691	0	FKBP4->FK506_binding_protein_4,chr12:2904119-2914576:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	IRF6--RPL7P23p	3	0	IRF6	4241	chr1:209969758:-	RPL7P23p	16566	chr5:76878778:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0691	0	IRF6->chr1:209959036-209979465:-,interferon_regulatory_factor_6,RPL7P23p->chr5:76878198-76879010:+	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	KCNAB2--ENOSF1	3	0	KCNAB2	2323	chr1:6052848:+	ENOSF1	37299	chr18:706578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0691	0	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,ENOSF1->chr18:670324-712676:-,enolase_superfamily_member_1	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	TAF1D--MKNK1	3	0	TAF1D	9121	chr11:93468042:-	MKNK1	21969	chr1:47051822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0691	0	TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-,MKNK1->MAP_kinase_interacting_serine/threonine_kinase_1,chr1:47023090-47082515:-	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	UPF3A--CDC16	3	0	UPF3A	4015	chr13:115052104:+	CDC16	16795	chr13:115007596:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0691	0	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	MCF2L--SH3TC1	2	1	MCF2L	2233	chr13:113556685:+	SH3TC1	84917	chr4:8235090:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0.023	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,SH3TC1->SH3_domain_and_tetratricopeptide_repeats_1,chr4:8183799-8243530:+	SW1463_LARGE_INTESTINE	1	1	0.0691	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	ARHGAP17--YLPM1	2	0	ARHGAP17	8058	chr16:24979982:-	YLPM1	59149	chr14:75301968:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	ARHGAP17->Rho_GTPase_activating_protein_17,chr16:24930706-25026987:-,YLPM1->YLP_motif_containing_1,chr14:75230069-75322244:+	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	ATP5A1--SNTG1	2	0	ATP5A1	3379	chr18:43678138:-	SNTG1	24746	chr8:51085121:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	ATP5A1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_alpha_subunit_1,_cardiac_muscle,chr18:43664110-43684300:-,SNTG1->chr8:50822349-51706678:+,syntrophin_gamma_1	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	CDC123--CDK2AP1	2	0	CDC123	1355	chr10:12238318:+	CDK2AP1	21192	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	CDC123->cell_division_cycle_123,chr10:12237964-12292588:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	CLSTN1--MSH3	2	0	CLSTN1	1884	chr1:9883701:-	MSH3	25527	chr5:79960962:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	CLSTN1->calsyntenin_1,chr1:9789084-9884584:-,MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	DNM1--ASUN	2	0	DNM1	3275	chr9:130981531:+	ASUN	36355	chr12:27070666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	DNM1->chr9:130965658-131017527:+,dynamin_1,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	EIF2AK2--SULT6B1	2	0	EIF2AK2	4529	chr2:37373996:-	SULT6B1	38020	chr2:37398733:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[10755],EIF2AK2->Oncogene{Bushman},chr2:37326353-37384208:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_2,SULT6B1->chr2:37394963-37423741:-,sulfotransferase_family_6B_member_1	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	2	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	FBXW8--ARHGEF10L	2	0	FBXW8	5917	chr12:117402659:+	ARHGEF10L	20809	chr1:17907048:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	FBXW8->F-box_and_WD_repeat_domain_containing_8,chr12:117348761-117468953:+,ARHGEF10L->Rho_guanine_nucleotide_exchange_factor_10_like,chr1:17866330-18024369:+	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	HNRNPA2B1--ST13	2	0	HNRNPA2B1	5215	chr7:26236935:-	ST13	24654	chr22:41226960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	LGALS3--TTC9C	2	0	LGALS3	2306	chr14:55596018:+	TTC9C	17047	chr11:62505760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	LGALS3->Oncogene{Bushman},chr14:55590828-55612126:+,lectin,_galactoside_binding_soluble_3,TTC9C->chr11:62495541-62507765:+,tetratricopeptide_repeat_domain_9C	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	MICALL2--RP11-566K11.7	2	0	MICALL2	1319	chr7:1498820:-	RP11-566K11.7	21635	chr16:89976999:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	MICALL2->MICAL_like_2,chr7:1468101-1499138:-,RP11-566K11.7->chr16:89972565-89984641:+	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	PSMA7--BRMS1	2	0	PSMA7	5740	chr20:60713227:-	BRMS1	12621	chr11:66108804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7,BRMS1->Oncogene{Bushman},breast_cancer_metastasis_suppressor_1,chr11:66104804-66112596:-	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	RBM14--ZC3H3	2	0	RBM14	1476	chr11:66384528:+	ZC3H3	17057	chr8:144590069:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	RBM14->RNA_binding_motif_protein_14,chr11:66384053-66394818:+,ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
SW1463_LARGE_INTESTINE	SNAPC4--IKBKAP	2	0	SNAPC4	1499	chr9:139292751:-	IKBKAP	41901	chr9:111661029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0461	0	SNAPC4->chr9:139270029-139293249:-,small_nuclear_RNA_activating_complex_polypeptide_4,IKBKAP->chr9:111629797-111696396:-,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_complex-associated_protein	SW1463_LARGE_INTESTINE	1	1	0.0461	TRUE	0	0	0	1	0	TRUE	ACH-000470
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--GLIS2	315	149	CBFA2T3	15652	chr16:88945678:-	GLIS2	27131	chr16:4384802:+	ONLY_REF_SPLICE	YES	109	0	0.81	1	4.3691	2.0666	CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,GLIS2->GLIS_family_zinc_finger_2,chr16:4364762-4389598:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	6.4357	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	328	65	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	4.5494	0.9016	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	5.451	TRUE	361	258	24	38	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	111	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.5396	0.3606	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.9002	TRUE	508	994	45	981	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANO7--DHDH	81	56	ANO7	20467	chr2:242157796:+	DHDH	27790	chr19:49438257:+	ONLY_REF_SPLICE	YES	4	5	0.97	0.96	1.1235	0.7767	ANO7->anoctamin_7,chr2:242127924-242164792:+,DHDH->chr19:49436939-49448226:+,dihydrodiol_dehydrogenase	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.97	1.9002	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	82	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1373	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1373	TRUE	0	0	0	518	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	73	31	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	34	34	0.75	0.75	1.0125	0.43	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.75	1.4425	TRUE	181	1564	124	196	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	64	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	215	12	0.23	0.84	0.8877	0.0139	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.84	0.9016	TRUE	519	3926	326	965	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	30	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4161	0.0139	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.43	FALSE	462	80	0	856	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	7	66	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	5570	chr1:149591759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0971	0.9154	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0125	TRUE	361	258	24	38	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	14	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	65	21	0.26	0.52	0.1942	0.1248	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.52	0.319	TRUE	267	562	48	632	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MELK--RAPGEF4	15	5	MELK	4636	chr9:36589649:+	RAPGEF4	54949	chr2:173885346:+	ONLY_REF_SPLICE	YES	32	0	0.38	1	0.2081	0.0694	MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,RAPGEF4->Rap_guanine_nucleotide_exchange_factor_4,chr2:173600002-173917621:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.2775	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANO7--DHDH	1	57	ANO7	21558	chr2:242162691:+	DHDH	27790	chr19:49438257:+	ONLY_REF_SPLICE	YES	2	5	0.97	0.92	0.0139	0.7906	ANO7->anoctamin_7,chr2:242127924-242164792:+,DHDH->chr19:49436939-49448226:+,dihydrodiol_dehydrogenase	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	0.97	0.8045	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANO7--DHDH	1	57	ANO7	22063	chr2:242163196:+	DHDH	27790	chr19:49438257:+	ONLY_REF_SPLICE	YES	2	5	0.97	0.92	0.0139	0.7906	ANO7->anoctamin_7,chr2:242127924-242164792:+,DHDH->chr19:49436939-49448226:+,dihydrodiol_dehydrogenase	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	0.97	0.8045	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAPGEF4--MELK	12	3	RAPGEF4	30956	chr2:173885443:+	MELK	49019	chr9:36597219:+	ONLY_REF_SPLICE	YES	0	40	1	0.27	0.1664	0.0416	RAPGEF4->Rap_guanine_nucleotide_exchange_factor_4,chr2:173600002-173917621:+,MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.208	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	26	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	7	0.97	0.82	0.0832	0.3606	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.97	0.4438	FALSE	189	492	56	216	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MELK--RAPGEF4	11	5	MELK	5780	chr9:36594768:+	RAPGEF4	54949	chr2:173885346:+	ONLY_REF_SPLICE	YES	40	0	0.29	1	0.1526	0.0694	MELK->chr9:36572859-36677678:+,maternal_embryonic_leucine_zipper_kinase,RAPGEF4->Rap_guanine_nucleotide_exchange_factor_4,chr2:173600002-173917621:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.222	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	10	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	64	21	0.21	0.45	0.1387	0.0971	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.45	0.2358	TRUE	267	562	48	632	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--GLIS2	2	34	CBFA2T3	15652	chr16:88945678:-	GLIS2	27390	chr16:4385061:+	ONLY_REF_SPLICE	YES	109	57	0.25	0.39	0.0277	0.4716	CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,GLIS2->GLIS_family_zinc_finger_2,chr16:4364762-4389598:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.39	0.4993	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	10	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1387	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1387	TRUE	465	1949	224	605	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	26	MT-CO3	1220	chrM:9426:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	3	6	0.91	0.83	0.0416	0.3606	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.91	0.4022	FALSE	189	492	56	216	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	26	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	NO	3	0	0.91	1	0.0416	0.3606	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.4022	FALSE	189	492	56	216	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2368	0	0	1	0.1248	0.0139	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1387	FALSE	13	9	0	364	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	9	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1248	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1248	TRUE	0	0	0	434	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	8	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.111	0.0139	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1249	FALSE	462	80	0	856	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	8	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.111	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.111	TRUE	0	0	0	434	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0971	0.0416	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1387	FALSE	499	1288	110	792	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	7	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2349	0	0	1	0.0971	0.0139	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.111	FALSE	13	9	0	364	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	6	1	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	7	269	0.5	0.03	0.0832	0.0139	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.5	0.0971	FALSE	0	0	0	19	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	5	1	AC104820.2	6553	chr2:182091262:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	31	185	0.16	0.03	0.0694	0.0139	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.16	0.0833	FALSE	0	0	0	11	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0555	0.0694	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.1249	FALSE	499	1288	110	792	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	3	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.0555	0.0416	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	1	0.0971	FALSE	189	492	56	216	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0555	TRUE	0	0	0	434	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	4	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0555	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0555	FALSE	16	356	14	466	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANO7--DHDH	3	0	ANO7	19977	chr2:242157306:+	DHDH	27790	chr19:49438257:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	ANO7->anoctamin_7,chr2:242127924-242164792:+,DHDH->chr19:49436939-49448226:+,dihydrodiol_dehydrogenase	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0416	TRUE	0	0	0	434	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0416	FALSE	292	1546	117	613	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	3	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0416	TRUE	1	10	0	18	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	2	1	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	31	269	0.09	0.01	0.0277	0.0139	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.09	0.0416	FALSE	0	1	0	18	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	11	1	0.21	0.0277	0.0139	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.0416	TRUE	458	1351	185	561	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PHF14	2	0	C17orf76-AS1	1593	chr17:16342728:+	PHF14	37718	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	C17orf76-AS1->chr17:16342136-16381992:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0277	TRUE	0	0	0	5	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR17HG--PANK2	2	0	MIR17HG	2669	chr13:92002480:+	PANK2	18090	chr20:3899318:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	MIR17HG->chr13:92000074-92006833:+,miR-17-92a-1_cluster_host_gene,PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--SEPHS1	2	0	RCC1	2175	chr1:28834672:+	SEPHS1	21331	chr10:13387028:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SEPHS1->chr10:13359424-13390297:-,selenophosphate_synthetase_1	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--TADA2A	2	0	RCC1	2175	chr1:28834672:+	TADA2A	20497	chr17:35771356:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0277	FALSE	46	201	11	112	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--FUS	2	0	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0277	TRUE	5	20	0	32	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.14	1	0.0139	0.0277	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.0416	FALSE	164	806	69	479	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--MRPL3	1	1	DANCR	1530	chr4:53579126:+	MRPL3	15943	chr3:131190123:-	ONLY_REF_SPLICE	NO	477	366	0	0.01	0.0139	0.0139	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0278	FALSE	0	1	0	2	0	FALSE	ACH-000602
M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	1	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0139	0.0139	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0278	FALSE	0	24	0	62	0	FALSE	ACH-000602
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	63	46	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7966	0.5816	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.3782	TRUE	508	994	45	981	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	58	55	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	75	133	0.6	0.46	0.7333	0.6954	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.6	1.4287	TRUE	181	1564	124	196	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	31	56	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	183	24	0.32	0.78	0.392	0.708	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.78	1.1	TRUE	267	562	48	632	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	34	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	241	13	0.15	0.76	0.4299	0.0885	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.76	0.5184	TRUE	519	3926	326	965	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CASC11	21	20	PVT1	1202	chr8:128806980:+	CASC11	28460	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	92	0	0.31	1	0.2655	0.2529	LOCAL_INVERSION:+:-:[60566],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	1	0.5184	TRUE	0	5	0	3	5	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	12	44	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	183	24	0.23	0.7	0.1517	0.5563	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.7	0.708	TRUE	267	562	48	632	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	21	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2655	0.0506	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3161	FALSE	462	80	0	856	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	15	24	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	2	0.91	0.95	0.1897	0.3034	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.95	0.4931	FALSE	515	4851	409	746	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--B2M	19	6	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	8152	0	0	1	0.2402	0.0759	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.3161	TRUE	0	0	0	28	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	19	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	20	0	0.5	1	0.2402	0.0126	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.2528	TRUE	0	42	0	133	42	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL589743.1--RP11-536C10.17	17	2	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	30	0	0.39	1	0.2149	0.0253	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.2402	TRUE	0	33	0	45	33	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	16	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2023	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2023	TRUE	0	0	0	518	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	6	26	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	1	0.89	0.97	0.0759	0.3287	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.97	0.4046	FALSE	407	2205	196	549	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	9	11	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	14	0	0.59	1	0.1138	0.1391	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.2529	FALSE	16	356	14	466	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	7	13	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	15	0	0.57	1	0.0885	0.1644	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.2529	FALSE	0	9	0	55	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	10	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1264	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1264	TRUE	0	0	0	81	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR4--KCNJ6	9	3	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	9	0	0.57	1	0.1138	0.0379	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.1517	FALSE	0	24	0	27	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	8	6	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	6	1	0.7	0.93	0.1011	0.0759	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.93	0.177	FALSE	33	240	4	98	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	26	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.97	0.94	0.0379	0.3287	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	0.97	0.3666	FALSE	467	2173	244	435	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-108K3.1--GLDN	7	7	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0885	0.0885	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.177	FALSE	0	19	0	46	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	7	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2886	0	0	1	0.0885	0.0126	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1011	FALSE	0	0	0	189	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--IGH@	7	0	C17orf76-AS1	1593	chr17:16342728:+	IGH@	127577	chr14:106175001:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0885	0	C17orf76-AS1->chr17:16342136-16381992:+,IGH@->Oncogene{Bushman}	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0885	TRUE	0	0	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV3-11	4	8	AC096579.7	4034	chr2:89156884:-	IGKV3-11	8780	chr2:89326873:-	INCL_NON_REF_SPLICE	YES	10243	6434	0	0	0.0506	0.1011	AC096579.7->chr2:89130700-89165653:-,IGKV3-11->chr2:89326668-89327228:-,immunoglobulin_kappa_variable_3-11	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1517	TRUE	0	8	1	1	4	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV3-11	3	11	AC096579.7	4016	chr2:89156902:-	IGKV3-11	8750	chr2:89326903:-	INCL_NON_REF_SPLICE	YES	10821	5147	0	0	0.0379	0.1391	AC096579.7->chr2:89130700-89165653:-,IGKV3-11->chr2:89326668-89327228:-,immunoglobulin_kappa_variable_3-11	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.177	TRUE	0	8	1	1	4	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXW7--CBLN4	5	1	FBXW7	2161	chr4:153456093:-	CBLN4	30026	chr20:54575903:-	ONLY_REF_SPLICE	YES	83	0	0.07	1	0.0632	0.0126	FBXW7->ArcherDX_panel,F-box_and_WD_repeat_domain_containing_7,FoundationOne_panel,Oncogene{Bushman},chr4:153242410-153457253:-,CBLN4->cerebellin_4_precursor,chr20:54572496-54580528:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0758	TRUE	0	0	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	5	1	MT-ND1	1296	chrM:3602:+	MT-RNR2	5569	chrM:2283:+	INCL_NON_REF_SPLICE	YES	59	9040	0.09	0	0.0632	0.0126	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0758	FALSE	120	26	5	87	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--PTMA	5	0	AC096579.7	4062	chr2:89156856:-	PTMA	10062	chr2:232573242:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	AC096579.7->chr2:89130700-89165653:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0632	TRUE	0	0	0	3	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	4	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	2895	0	0	1	0.0506	0.0126	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0632	FALSE	0	0	0	189	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	4	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0506	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0506	FALSE	0	26	0	50	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNAS	4	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0506	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0506	TRUE	0	3	0	13	2	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HS2ST1--SEP15	3	3	HS2ST1	1513	chr1:87380843:+	SEP15	28222	chr1:87346408:-	ONLY_REF_SPLICE	YES	274	2815	0.02	0	0.0379	0.0379	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0758	FALSE	0	3	0	8	1	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	7	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	23	0	0.28	1	0.0253	0.0885	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	1	0.1138	FALSE	0	48	1	163	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-108K3.1--GLDN	2	6	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0.0759	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1012	FALSE	0	14	0	30	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	1	MT-ND1	1291	chrM:3597:+	MT-RNR2	5001	chrM:1715:+	INCL_NON_REF_SPLICE	YES	59	0	0.06	1	0.0379	0.0126	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0505	FALSE	114	26	4	85	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf25--DAZAP1	3	0	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0379	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0379	TRUE	6	7	1	24	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0379	TRUE	0	0	0	81	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HS2ST1--SEP15	2	4	HS2ST1	1513	chr1:87380843:+	SEP15	26013	chr1:87369131:-	ONLY_REF_SPLICE	YES	274	165	0.02	0.04	0.0253	0.0506	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0759	TRUE	0	2	0	9	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCAT1	3	0	PVT1	1202	chr8:128806980:+	CCAT1	29731	chr8:128221962:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0379	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding)	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--NANS	3	0	TXNDC5	2258	chr6:7910837:-	NANS	18239	chr9:100819073:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,NANS->N-acetylneuraminate_synthase,chr9:100819021-100845357:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	1	7	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	2	0.89	0.8	0.0126	0.0885	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.89	0.1011	FALSE	141	264	50	91	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	1	7	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	NO	5	1	0.62	0.89	0.0126	0.0885	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.89	0.1011	TRUE	37	101	7	40	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	1	6	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	13011	chr18:53755642:+	ONLY_REF_SPLICE	YES	6	0	0.54	1	0.0126	0.0759	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	1	0.0885	FALSE	0	12	0	8	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP13A3--WWP1	2	0	ATP13A3	22354	chr3:194157824:-	WWP1	49385	chr8:87414248:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	ATP13A3->ATPase_13A3,chr3:194123401-194219093:-,WWP1->Oncogene{Bushman},WW_domain_containing_E3_ubiquitin_protein_ligase_1,chr8:87354967-87490649:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AURKB--USP28	2	0	AURKB	1424	chr17:8113495:-	USP28	18380	chr11:113702715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	AURKB->ArcherDX_panel,FoundationOne_panel,aurora_kinase_B,chr17:8108056-8113918:-,USP28->chr11:113668596-113746292:-,ubiquitin_specific_peptidase_28	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC14--GTPBP10	2	0	CCDC14	1574	chr3:123679991:-	GTPBP10	36514	chr7:90001469:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC74A--PTPN12	2	0	CCDC74A	1953	chr2:132286200:+	PTPN12	18717	chr7:77214860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Heart=[count:1=pct:0.4]},CCDC74A->chr2:132285248-132291239:+,coiled-coil_domain_containing_74A,PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	2	34	1	1	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--FAM120AOS	2	0	CHD2	6529	chr15:93444529:+	FAM120AOS	62843	chr9:96212881:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx&tcga_normals:1/3694=0.03%,CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,FAM120AOS->chr9:96208776-96215874:-,family_with_sequence_similarity_120A_opposite_strand	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	2	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1984--SF1	2	0	KIAA1984	4889	chr9:139697238:+	SF1	23443	chr11:64532990:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	KIAA1984->chr9:139690802-139702193:+,SF1->chr11:64532078-64546258:-,splicing_factor_1	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MB21D2--FGF12	2	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	FALSE	0	17	0	46	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--AC159540.1	2	0	RCC1	2175	chr1:28834672:+	AC159540.1	24725	chr2:98089511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,AC159540.1->chr2:98081083-98099107:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	2	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNAS	2	0	RCC1	2175	chr1:28834672:+	GNAS	40308	chr20:57478586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	1	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--TAF1D	2	0	RCC1	2175	chr1:28834672:+	TAF1D	27214	chr11:93467826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	1	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL15--IGJ	2	0	RPL15	1695	chr3:23958730:+	IGJ	12650	chr4:71532231:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	RPL15->chr3:23958036-23965183:+,ribosomal_protein_L15,IGJ->chr4:71521258-71547534:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-108K3.1--GLDN	1	3	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0126	0.0379	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0505	FALSE	0	30	1	55	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--IGJ	1	2	RPS3	2292	chr11:75111821:+	IGJ	14484	chr4:71532231:-	ONLY_REF_SPLICE	YES	6501	208	0	0.01	0.0126	0.0253	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,IGJ->chr4:71521258-71547534:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0379	FALSE	0	0	0	1	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	1	2	STX18-AS1	2665	chr4:4546634:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	NO	19	1	0.14	0.75	0.0126	0.0253	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.75	0.0379	TRUE	3	17	0	6	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	26	0	0.1	1	0.0126	0.0253	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.0379	FALSE	272	151	14	158	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C6orf165--RARS2	1	1	C6orf165	20655	chr6:88211028:+	RARS2	29410	chr6:88279308:-	ONLY_REF_SPLICE	YES	107	48	0.02	0.04	0.0126	0.0126	LOCAL_INVERSION:+:-:[2744],C6orf165->chr6:88117730-88221352:+,RARS2->arginyl-tRNA_synthetase_2,_mitochondrial,chr6:88224096-88299721:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--IVNS1ABP	1	1	CHD2	6529	chr15:93444529:+	IVNS1ABP	66323	chr1:185274775:-	ONLY_REF_SPLICE	YES	275	259	0.01	0.01	0.0126	0.0126	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MON2--USP15	1	1	MON2	1502	chr12:62861098:+	USP15	50100	chr12:62687960:+	ONLY_REF_SPLICE	NO	60	48	0.03	0.04	0.0126	0.0126	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[49386],MON2->MON2_homolog,_regulator_of_endosome-to-Golgi_trafficking,chr12:62860597-62991363:+,USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDST1--DGKD	1	1	NDST1	7661	chr5:149901329:+	DGKD	47299	chr2:234356733:+	ONLY_REF_SPLICE	YES	42	491	0.05	0	0.0126	0.0126	NDST1->N-deacetylase/N-sulfotransferase_1,chr5:149865381-149937773:+,DGKD->chr2:234263153-234380750:+,diacylglycerol_kinase_delta	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--SYTL2	1	1	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	NO	352	0	0.01	1	0.0126	0.0126	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0252	FALSE	4	2	0	20	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTK2B--PPP3CC	1	1	PTK2B	8371	chr8:27238309:+	PPP3CC	53346	chr8:22398128:+	ONLY_REF_SPLICE	NO	446	264	0	0.01	0.0126	0.0126	PTK2B->chr8:27168999-27316903:+,protein_tyrosine_kinase_2_beta,PPP3CC->chr8:22298332-22398652:+,protein_phosphatase_3_catalytic_subunit_gamma	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1084E5.1--NUDCD1	1	1	RP11-1084E5.1	2580	chr8:110055906:-	NUDCD1	19814	chr8:110293401:-	ONLY_REF_SPLICE	YES	110	204	0.02	0.01	0.0126	0.0126	RP11-1084E5.1->chr8:109907258-110075646:-,NUDCD1->NudC_domain_containing_1,chr8:110253148-110346614:-	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL12--GAS5	1	1	RPL12	3125	chr9:130211560:-	GAS5	11911	chr1:173833842:-	ONLY_REF_SPLICE	YES	5137	3112	0	0	0.0126	0.0126	RPL12->chr9:130209953-130213684:-,ribosomal_protein_L12,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0252	FALSE	0	1	0	5	1	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--ARMC6	1	1	RPS3	2292	chr11:75111821:+	ARMC6	22936	chr19:19166074:+	ONLY_REF_SPLICE	YES	6501	168	0	0.01	0.0126	0.0126	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000512
INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIQK--NRF1	1	1	TRIQK	11265	chr8:93929157:-	NRF1	20701	chr7:129269919:+	ONLY_REF_SPLICE	YES	103	8	0.02	0.2	0.0126	0.0126	TRIQK->chr8:93895758-94029901:-,triple_QxxK/R_motif_containing,NRF1->Oncogene{Bushman},chr7:129251555-129396922:+,nuclear_respiratory_factor_1	INA6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.2	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-000512
OVCAR4_OVARY	GCSH--PKD1L2	609	296	GCSH	4976	chr16:81118068:-	PKD1L2	65977	chr16:81134889:-	ONLY_REF_SPLICE	YES	177	2	0.84	1	7.3743	3.5842	LOCAL_REARRANGEMENT:-:[4472],GCSH->chr16:81115566-81130008:-,glycine_cleavage_system_protein_H,PKD1L2->chr16:81134480-81253975:-,polycystin_1_like_2_(gene/pseudogene)	OVCAR4_OVARY	0.84	1	10.9585	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	LSR--SCN1B	257	137	LSR	3330	chr19:35741562:+	SCN1B	14037	chr19:35523432:+	ONLY_REF_SPLICE	YES	285	0	0.58	1	3.112	1.6589	HGNC_GENEFAM,{Klijn_CCL:Ovary=1},LSR->chr19:35739233-35758867:+,lipolysis_stimulated_lipoprotein_receptor,SCN1B->chr19:35521588-35531352:+,sodium_voltage-gated_channel_beta_subunit_1	OVCAR4_OVARY	0.58	1	4.7709	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	CTD-2544L4.1--TBC1D7	123	35	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5189	chr6:13328738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4894	0.4238	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	OVCAR4_OVARY	1	1	1.9132	TRUE	0	0	0	5	0	TRUE	ACH-000617
OVCAR4_OVARY	TIMM23B--LINC00843	108	36	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3078	0.4359	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OVCAR4_OVARY	1	1	1.7437	TRUE	508	994	45	981	0	FALSE	ACH-000617
OVCAR4_OVARY	CTD-2544L4.1--TBC1D7	102	38	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5177	chr6:13328750:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2351	0.4601	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	OVCAR4_OVARY	1	1	1.6952	TRUE	0	0	0	5	0	TRUE	ACH-000617
OVCAR4_OVARY	CTD-2544L4.1--TBC1D7	96	38	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5183	chr6:13328744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1624	0.4601	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	OVCAR4_OVARY	1	1	1.6225	TRUE	0	0	0	5	0	TRUE	ACH-000617
OVCAR4_OVARY	GCSH--PKD1L2	5	300	GCSH	5123	chr16:81117921:-	PKD1L2	65960	chr16:81134906:-	INCL_NON_REF_SPLICE	YES	179	2	0.63	0.99	0.0605	3.6326	LOCAL_REARRANGEMENT:-:[4472],GCSH->chr16:81115566-81130008:-,glycine_cleavage_system_protein_H,PKD1L2->chr16:81134480-81253975:-,polycystin_1_like_2_(gene/pseudogene)	OVCAR4_OVARY	0.63	0.99	3.6931	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	15	196	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	99	1	0.68	1	0.1816	2.3733	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.68	1	2.5549	FALSE	344	826	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	12	202	MT-ND4	1942	chrM:11701:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	25398	0	0.01	1	0.1453	2.446	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.01	1	2.5913	FALSE	344	827	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	TIMM23--RP11-464F9.1	60	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	523	3	0.11	0.96	0.7265	0.0727	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OVCAR4_OVARY	0.11	0.96	0.7992	TRUE	519	3926	326	965	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	4	198	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	62	0	0.77	1	0.0484	2.3975	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.77	1	2.4459	FALSE	344	826	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	4	195	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	55	1	0.78	0.99	0.0484	2.3612	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.78	0.99	2.4096	FALSE	344	826	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	3	193	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	31	1	0.86	0.99	0.0363	2.337	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.86	0.99	2.3733	FALSE	344	826	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND1--MT-RNR2	49	5	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	NO	110	271	0.33	0.17	0.5933	0.0605	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OVCAR4_OVARY	0.17	0.33	0.6538	FALSE	92	22	4	61	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	40	31	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2703	0	0.03	1	0.4844	0.3754	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.03	1	0.8598	FALSE	344	827	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	10	141	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	18	0	0.89	1	0.1211	1.7073	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.89	1	1.8284	FALSE	344	821	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	4	163	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	22	0	0.88	1	0.0484	1.9737	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.88	1	2.0221	FALSE	344	826	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	ANXA9--NUP210L	38	21	ANXA9	6456	chr1:150960817:+	NUP210L	45292	chr1:153984846:-	ONLY_REF_SPLICE	YES	46	0	0.56	1	0.4601	0.2543	{Klijn_CCL:Ovary=1},ANXA9->annexin_A9,chr1:150954493-150968110:+,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	OVCAR4_OVARY	0.56	1	0.7144	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	5	150	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	33	1	0.82	0.99	0.0605	1.8163	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.82	0.99	1.8768	FALSE	344	826	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--MT-TE	40	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.4844	0.0605	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVCAR4_OVARY	0.92	1	0.5449	FALSE	499	1288	110	792	0	FALSE	ACH-000617
OVCAR4_OVARY	DLG1--PCYT1A	33	24	DLG1	5122	chr3:197009550:-	PCYT1A	49767	chr3:195975194:-	ONLY_REF_SPLICE	YES	48	45	0.54	0.56	0.3996	0.2906	DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component,PCYT1A->chr3:195941093-196014828:-,phosphate_cytidylyltransferase_1,_choline,_alpha	OVCAR4_OVARY	0.54	0.56	0.6902	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	4	138	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	315	1	0.31	0.99	0.0484	1.671	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.31	0.99	1.7194	FALSE	344	827	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	36	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	19438	8	0	0.83	0.4359	0.0242	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.83	0.4601	FALSE	230	193	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-TA--MT-TC	35	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4238	0.0242	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVCAR4_OVARY	1	1	0.448	FALSE	462	80	0	856	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--MT-TE	32	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.3875	0.1574	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVCAR4_OVARY	0.98	1	0.5449	FALSE	499	1288	110	792	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	17	46	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	19062	0	0	1	0.2058	0.557	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0	1	0.7628	FALSE	328	800	43	304	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	13	46	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	2443	0	0.02	1	0.1574	0.557	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.02	1	0.7144	FALSE	344	827	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--MT-TE	23	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.2785	0.0727	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVCAR4_OVARY	0.88	1	0.3512	FALSE	499	1288	110	792	0	FALSE	ACH-000617
OVCAR4_OVARY	RP11-123O10.4--GRIP1	24	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2906	0.0121	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OVCAR4_OVARY	1	1	0.3027	FALSE	416	2512	207	587	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	22	6	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	27415	0	0	1	0.2664	0.0727	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	1	0.3391	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	5	64	MT-ND4	1489	chrM:11248:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	YES	1869	0	0.04	1	0.0605	0.775	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.04	1	0.8355	FALSE	344	827	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	13	31	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	13186	0	0	1	0.1574	0.3754	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0	1	0.5328	FALSE	344	827	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	RP11-973F15.1--RP11-94A24.1	18	9	RP11-973F15.1	3763	chr8:123682599:-	RP11-94A24.1	7870	chr8:123429261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.218	0.109	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	OVCAR4_OVARY	1	1	0.327	TRUE	0	2	0	7	2	TRUE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	4	64	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	18	1	0.79	0.99	0.0484	0.775	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.79	0.99	0.8234	FALSE	344	821	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--MT-ND5	19	4	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	4184	1	0.01	0.2301	0.0484	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	OVCAR4_OVARY	0.01	1	0.2785	FALSE	101	855	57	72	0	FALSE	ACH-000617
OVCAR4_OVARY	ZNF654--HMGB2	20	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2422	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OVCAR4_OVARY	1	1	0.2422	TRUE	0	0	0	518	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	7	48	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	5	0	0.92	1	0.0848	0.5812	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.92	1	0.666	FALSE	344	821	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	16	8	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	27402	10	0	0.71	0.1937	0.0969	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.71	0.2906	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	16	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19519	10	0	0.64	0.1937	0.0242	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.64	0.2179	FALSE	230	198	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	5	46	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	12706	0	0	1	0.0605	0.557	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0	1	0.6175	FALSE	344	827	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	5	46	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	90	0	0.36	1	0.0605	0.557	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.36	1	0.6175	FALSE	344	826	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	15	4	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22866	10	0	0.66	0.1816	0.0484	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.66	0.23	FALSE	231	205	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	4	46	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	104	0	0.32	1	0.0484	0.557	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.32	1	0.6054	FALSE	344	826	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	HSPBP1--GRK5	15	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1816	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	OVCAR4_OVARY	1	1	0.1816	TRUE	1	39	0	134	39	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--MT-TE	8	25	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0969	0.3027	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVCAR4_OVARY	0.97	1	0.3996	FALSE	499	1288	110	792	0	FALSE	ACH-000617
OVCAR4_OVARY	RFX3--GLIS3	13	4	RFX3	1258	chr9:3525747:-	GLIS3	57151	chr9:3932470:-	ONLY_REF_SPLICE	YES	6	14	0.74	0.55	0.1574	0.0484	RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,GLIS3->GLIS_family_zinc_finger_3,chr9:3824127-4348392:-	OVCAR4_OVARY	0.55	0.74	0.2058	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	6	31	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1705	0	0.02	1	0.0727	0.3754	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.02	1	0.4481	FALSE	344	827	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	NRIP1--AF127936.7	13	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.79	1	0.1574	0.0242	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OVCAR4_OVARY	0.79	1	0.1816	FALSE	292	1546	117	613	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND3--MT-ATP8	13	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1574	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	1	1	0.1574	FALSE	351	233	23	137	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	10	12	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	27304	0	0	1	0.1211	0.1453	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	1	0.2664	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	SLC44A1--FSD1L	11	8	SLC44A1	6414	chr9:108097980:+	FSD1L	54220	chr9:108308639:+	ONLY_REF_SPLICE	YES	33	2	0.37	0.9	0.1332	0.0969	NEIGHBORS[8625],SLC44A1->chr9:108006903-108201452:+,solute_carrier_family_44_member_1,FSD1L->chr9:108210077-108314714:+,fibronectin_type_III_and_SPRY_domain_containing_1_like	OVCAR4_OVARY	0.37	0.9	0.2301	FALSE	0	1	0	1	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	11	7	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	26242	85	0	0.17	0.1332	0.0848	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.17	0.218	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	RP11-680G10.1--GSE1	12	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	29	1	0.33	0.1453	0.0242	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	OVCAR4_OVARY	0.33	1	0.1695	TRUE	465	1949	224	605	0	FALSE	ACH-000617
OVCAR4_OVARY	EHBP1L1--RP11-321G12.1	11	4	EHBP1L1	1369	chr11:65343877:+	RP11-321G12.1	21794	chr15:63724351:+	ONLY_REF_SPLICE	YES	15	0	0.5	1	0.1332	0.0484	EHBP1L1->EH_domain_binding_protein_1_like_1,chr11:65343509-65360121:+,RP11-321G12.1->chr15:63682335-63729347:+	OVCAR4_OVARY	0.5	1	0.1816	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	C11orf73--RP11-320L11.2	11	3	C11orf73	1268	chr11:86013520:+	RP11-320L11.2	12388	chr11:85995062:+	INCL_NON_REF_SPLICE	YES	324	0	0.04	1	0.1332	0.0363	LOCAL_REARRANGEMENT:+:[17543],C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73,RP11-320L11.2->chr11:85994969-85995710:+	OVCAR4_OVARY	0.04	1	0.1695	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	4	31	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	127	0	0.22	1	0.0484	0.3754	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.22	1	0.4238	FALSE	344	826	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	WDSUB1--BAZ2B	10	6	WDSUB1	9676	chr2:160112707:-	BAZ2B	64534	chr2:160194283:-	ONLY_REF_SPLICE	YES	32	18	0.33	0.47	0.1211	0.0727	LOCAL_REARRANGEMENT:-:[32180],WDSUB1->WD_repeat,_sterile_alpha_motif_and_U-box_domain_containing_1,chr2:160092304-160143310:-,BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-	OVCAR4_OVARY	0.33	0.47	0.1938	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	8	11	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	11352	619	0	0.03	0.0969	0.1332	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.03	0.2301	FALSE	231	215	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	4	27	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	99	0	0.24	1	0.0484	0.3269	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.24	1	0.3753	FALSE	344	826	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--MT-ND5	10	2	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	2209	1	0.01	0.1211	0.0242	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	OVCAR4_OVARY	0.01	1	0.1453	FALSE	101	855	57	72	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--COX7C	10	1	MT-ND6	1261	chrM:14413:-	COX7C	4608	chr5:85913803:+	INCL_NON_REF_SPLICE	YES	5006	0	0	1	0.1211	0.0121	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COX7C->chr5:85913721-85916779:+,cytochrome_c_oxidase_subunit_7C	OVCAR4_OVARY	0	1	0.1332	FALSE	0	0	0	7	0	FALSE	ACH-000617
OVCAR4_OVARY	NIPA2--POLA1	10	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1211	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	OVCAR4_OVARY	1	1	0.1211	TRUE	46	1352	75	139	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--MT-TE	4	23	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	4	0	0.87	1	0.0484	0.2785	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVCAR4_OVARY	0.87	1	0.3269	FALSE	499	1288	110	792	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	8	6	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	26945	0	0	1	0.0969	0.0727	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	1	0.1696	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	6	14	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	104	0	0.16	1	0.0727	0.1695	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.16	1	0.2422	FALSE	344	826	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--MT-TE	3	25	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0363	0.3027	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVCAR4_OVARY	0.97	1	0.339	FALSE	499	1288	110	792	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--MT-TE	3	25	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0363	0.3027	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVCAR4_OVARY	0.97	1	0.339	FALSE	499	1288	110	792	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--MT-TE	5	16	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.88	1	0.0605	0.1937	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVCAR4_OVARY	0.88	1	0.2542	FALSE	499	1288	110	792	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	5	15	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3658	85	0.01	0.19	0.0605	0.1816	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0.01	0.19	0.2421	FALSE	216	209	16	281	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	5	14	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	278	0	0.06	1	0.0605	0.1695	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	0.06	1	0.23	FALSE	344	827	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	3	21	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	7988	0	0	1	0.0363	0.2543	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	1	0.2906	FALSE	222	212	16	282	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	4	16	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	24055	1	0	0.95	0.0484	0.1937	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.95	0.2421	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	4	15	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7347	85	0	0.18	0.0484	0.1816	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.18	0.23	FALSE	218	210	16	281	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	7	2	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	20278	0	0	1	0.0848	0.0242	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	1	0.109	FALSE	231	204	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	6	6	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	26857	1	0	0.92	0.0727	0.0727	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.92	0.1454	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	7	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	19438	1	0	0.9	0.0848	0.0242	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.9	0.109	FALSE	230	193	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	ACTN4--MT-CO1	7	1	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	2663	31206	0	0	0.0848	0.0121	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OVCAR4_OVARY	0	0	0.0969	FALSE	0	0	0	30	0	FALSE	ACH-000617
OVCAR4_OVARY	C15orf57--CBX3	6	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	31	66	0.26	0.14	0.0727	0.0605	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OVCAR4_OVARY	0.14	0.26	0.1332	TRUE	267	562	48	632	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	4	13	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	27420	0	0	1	0.0484	0.1574	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	1	0.2058	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND1--MT-RNR2	5	8	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	52	0	0.2	1	0.0605	0.0969	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OVCAR4_OVARY	0.2	1	0.1574	FALSE	114	26	4	85	0	FALSE	ACH-000617
OVCAR4_OVARY	RPSAP52--HMGA2	6	4	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	33	164	0.23	0.06	0.0727	0.0484	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	OVCAR4_OVARY	0.06	0.23	0.1211	FALSE	0	59	0	125	0	FALSE	ACH-000617
OVCAR4_OVARY	EHBP1L1--RP11-321G12.1	5	7	EHBP1L1	1369	chr11:65343877:+	RP11-321G12.1	20699	chr15:63723256:+	ONLY_REF_SPLICE	YES	15	0	0.44	1	0.0605	0.0848	EHBP1L1->EH_domain_binding_protein_1_like_1,chr11:65343509-65360121:+,RP11-321G12.1->chr15:63682335-63729347:+	OVCAR4_OVARY	0.44	1	0.1453	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	4	11	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	26902	1	0	0.94	0.0484	0.1332	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.94	0.1816	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	4	11	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	26843	1	0	0.94	0.0484	0.1332	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.94	0.1816	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	6	2	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	19160	10	0	0.44	0.0727	0.0242	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.44	0.0969	FALSE	230	193	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	6	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19552	85	0	0.09	0.0727	0.0242	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.09	0.0969	FALSE	230	198	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	PDP1--RP11-486O13.2	6	1	PDP1	2613	chr8:94929307:+	RP11-486O13.2	18008	chr14:70694289:+	ONLY_REF_SPLICE	YES	25	3	0.22	0.7	0.0727	0.0121	PDP1->chr8:94870035-94938294:+,pyruvate_dehyrogenase_phosphatase_catalytic_subunit_1,RP11-486O13.2->chr14:70653840-70696904:+	OVCAR4_OVARY	0.22	0.7	0.0848	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	6	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0727	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	1	1	0.0727	FALSE	344	821	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--MT-ND5	5	4	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	3998	1	0	0.0605	0.0484	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	OVCAR4_OVARY	0	1	0.1089	FALSE	101	855	57	72	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--MT-TE	6	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0727	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVCAR4_OVARY	1	1	0.0727	FALSE	499	1288	110	792	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0727	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVCAR4_OVARY	1	1	0.0727	FALSE	499	1288	110	792	0	FALSE	ACH-000617
OVCAR4_OVARY	EHBP1L1--RP11-321G12.1	4	7	EHBP1L1	1369	chr11:65343877:+	RP11-321G12.1	20770	chr15:63723327:+	INCL_NON_REF_SPLICE	YES	15	1	0.42	0.92	0.0484	0.0848	EHBP1L1->EH_domain_binding_protein_1_like_1,chr11:65343509-65360121:+,RP11-321G12.1->chr15:63682335-63729347:+	OVCAR4_OVARY	0.42	0.92	0.1332	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	MT-ND1--MT-RNR2	4	7	MT-ND1	1227	chrM:3533:+	MT-RNR2	5001	chrM:1715:+	INCL_NON_REF_SPLICE	YES	23	0	0.32	1	0.0484	0.0848	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OVCAR4_OVARY	0.32	1	0.1332	FALSE	114	26	4	85	0	FALSE	ACH-000617
OVCAR4_OVARY	EHBP1L1--RP11-321G12.1	4	6	EHBP1L1	1369	chr11:65343877:+	RP11-321G12.1	20922	chr15:63723479:+	INCL_NON_REF_SPLICE	YES	15	2	0.4	0.83	0.0484	0.0727	EHBP1L1->EH_domain_binding_protein_1_like_1,chr11:65343509-65360121:+,RP11-321G12.1->chr15:63682335-63729347:+	OVCAR4_OVARY	0.4	0.83	0.1211	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	4	6	MT-ND4	1453	chrM:11212:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	27332	0	0	1	0.0484	0.0727	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	1	0.1211	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	3	10	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	25673	944	0	0.01	0.0363	0.1211	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.01	0.1574	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	4	6	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	26857	0	0	1	0.0484	0.0727	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	1	0.1211	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND5--MT-ND6	5	2	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	2	4613	0.78	0	0.0605	0.0242	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	OVCAR4_OVARY	0	0.78	0.0847	FALSE	26	124	4	93	0	FALSE	ACH-000617
OVCAR4_OVARY	ACTN4--MT-CO1	4	5	ACTN4	15652	chr19:39214946:+	MT-CO1	26380	chrM:6565:+	INCL_NON_REF_SPLICE	YES	2441	31413	0	0	0.0484	0.0605	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OVCAR4_OVARY	0	0	0.1089	FALSE	0	0	0	30	0	FALSE	ACH-000617
OVCAR4_OVARY	HSP90AB1--MT-RNR2	5	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3036	0	0	1	0.0605	0.0121	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OVCAR4_OVARY	0	1	0.0726	FALSE	13	9	0	364	0	FALSE	ACH-000617
OVCAR4_OVARY	HSP90AB1--MT-RNR2	5	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3033	0	0	1	0.0605	0.0121	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OVCAR4_OVARY	0	1	0.0726	FALSE	13	9	0	364	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND3--MT-ATP8	5	0	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0605	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	1	1	0.0605	FALSE	351	233	23	137	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	4	4	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	25738	1708	0	0	0.0484	0.0484	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0	0.0968	FALSE	231	205	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--MT-ND5	5	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0605	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	OVCAR4_OVARY	1	1	0.0605	FALSE	101	855	57	72	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0605	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVCAR4_OVARY	1	1	0.0605	FALSE	499	1288	110	792	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	3	7	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	27161	1708	0	0.01	0.0363	0.0848	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.01	0.1211	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	C15orf57--CBX3	4	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	30	68	0.17	0.08	0.0484	0.0242	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OVCAR4_OVARY	0.08	0.17	0.0726	TRUE	267	562	48	632	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	4	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	19438	10	0	0.38	0.0484	0.0242	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.38	0.0726	FALSE	230	193	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	3	6	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	27541	0	0	1	0.0363	0.0727	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	1	0.109	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	4	2	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	19433	0	0	1	0.0484	0.0242	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	1	0.0726	FALSE	230	197	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	3	6	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	28915	883	0	0.01	0.0363	0.0727	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.01	0.109	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	3	6	MT-ND4	1311	chrM:11070:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	25783	0	0	1	0.0363	0.0727	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	1	0.109	FALSE	231	205	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	4	2	MT-ND4	1200	chrM:10959:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	NO	18802	0	0	1	0.0484	0.0242	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	1	0.0726	FALSE	230	193	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	NRIP1--AF127936.7	3	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.0363	0.0727	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OVCAR4_OVARY	0.6	1	0.109	FALSE	164	806	69	479	0	FALSE	ACH-000617
OVCAR4_OVARY	KANSL1--ARL17B	4	1	KANSL1	2697	chr17:44301037:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	10	3	0.33	0.62	0.0484	0.0121	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	OVCAR4_OVARY	0.33	0.62	0.0605	TRUE	0	1	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	3	5	MT-ND4	1540	chrM:11299:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	29268	85	0	0.09	0.0363	0.0605	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.09	0.0968	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	3	5	MT-ND4	1533	chrM:11292:+	MT-ATP8	5479	chrM:8466:+	INCL_NON_REF_SPLICE	NO	29458	8	0	0.5	0.0363	0.0605	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.5	0.0968	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	4	1	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14064	85	0	0.06	0.0484	0.0121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.06	0.0605	FALSE	230	193	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	APP--MT-CO3	3	4	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	1487	15245	0	0	0.0363	0.0484	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OVCAR4_OVARY	0	0	0.0847	FALSE	0	0	0	26	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	27621	8	0	0.47	0.0363	0.0484	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.47	0.0847	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1285	chrM:11044:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	23093	8	0	0.47	0.0363	0.0484	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.47	0.0847	FALSE	231	205	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	27507	85	0	0.08	0.0363	0.0484	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.08	0.0847	FALSE	231	217	16	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	4	0	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	1	1	0.0484	FALSE	344	821	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVCAR4_OVARY	1	1	0.0484	FALSE	462	80	0	856	0	FALSE	ACH-000617
OVCAR4_OVARY	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0.0484	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVCAR4_OVARY	1	1	0.0847	FALSE	515	4851	409	746	0	FALSE	ACH-000617
OVCAR4_OVARY	USP54--SCUBE3	4	0	USP54	1017	chr10:75385695:-	SCUBE3	40745	chr6:35195357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0484	0	USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54,SCUBE3->chr6:35182190-35220856:+,signal_peptide,_CUB_domain_and_EGF_like_domain_containing_3	OVCAR4_OVARY	1	1	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	EHBP1L1--RP11-321G12.1	2	7	EHBP1L1	1369	chr11:65343877:+	RP11-321G12.1	20847	chr15:63723404:+	ONLY_REF_SPLICE	YES	15	1	0.38	0.9	0.0242	0.0848	EHBP1L1->EH_domain_binding_protein_1_like_1,chr11:65343509-65360121:+,RP11-321G12.1->chr15:63682335-63729347:+	OVCAR4_OVARY	0.38	0.9	0.109	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1253	chrM:11012:+	MT-ATP8	5527	chrM:8514:+	INCL_NON_REF_SPLICE	YES	20657	2013	0	0	0.0363	0.0242	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0	0.0605	FALSE	231	204	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	20206	1	0	0.83	0.0363	0.0242	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0.83	0.0605	FALSE	231	204	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND3--MT-ATP8	3	1	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	85	10	0.04	0.29	0.0363	0.0121	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0.04	0.29	0.0484	FALSE	351	233	23	137	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5571	chrM:8558:+	INCL_NON_REF_SPLICE	YES	19691	816	0	0	0.0363	0.0121	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	0	0	0.0484	FALSE	231	204	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--MT-TE	3	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	4	0	0.5	1	0.0363	0.0121	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVCAR4_OVARY	0.5	1	0.0484	FALSE	499	1288	110	792	0	FALSE	ACH-000617
OVCAR4_OVARY	ALDOA--KRT17	3	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	OVCAR4_OVARY	1	1	0.0363	TRUE	0	0	0	10	0	TRUE	ACH-000617
OVCAR4_OVARY	MT-ND3--MT-ATP8	3	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	1	1	0.0363	FALSE	351	233	23	137	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ATP8	3	0	MT-ND4	1003	chrM:10762:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVCAR4_OVARY	1	1	0.0363	FALSE	230	189	14	283	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	1	1	0.0363	FALSE	344	821	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND4--MT-ND4L	3	0	MT-ND4	1033	chrM:10792:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVCAR4_OVARY	1	1	0.0363	FALSE	344	821	44	306	0	FALSE	ACH-000617
OVCAR4_OVARY	MT-ND6--MT-ND5	3	0	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	OVCAR4_OVARY	1	1	0.0363	FALSE	101	855	57	72	0	FALSE	ACH-000617
OVCAR4_OVARY	TMEM54--MT-CO2	3	0	TMEM54	2326	chr1:33363811:-	MT-CO2	8517	chrM:7597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	TMEM54->chr1:33360195-33367039:-,transmembrane_protein_54,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OVCAR4_OVARY	1	1	0.0363	FALSE	0	0	0	10	0	FALSE	ACH-000617
OVCAR4_OVARY	NRIP1--AF127936.7	2	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.5	1	0.0242	0.0363	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OVCAR4_OVARY	0.5	1	0.0605	FALSE	125	705	46	456	0	FALSE	ACH-000617
OVCAR4_OVARY	CTA-292E10.6--ZC3H7B	2	2	CTA-292E10.6	4685	chr22:29218167:+	ZC3H7B	33125	chr22:41751473:+	ONLY_REF_SPLICE	YES	0	89	1	0.04	0.0242	0.0242	CTA-292E10.6->chr22:29196671-29244547:+,ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B	OVCAR4_OVARY	0.04	1	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	RP11-680G10.1--GSE1	2	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.29	0.0242	0.0242	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	OVCAR4_OVARY	0.29	1	0.0484	TRUE	458	1351	185	561	0	FALSE	ACH-000617
OVCAR4_OVARY	RP11-973F15.1--RP11-94A24.1	1	5	RP11-973F15.1	2854	chr8:123683508:-	RP11-94A24.1	7870	chr8:123429261:-	ONLY_REF_SPLICE	YES	18	0	0.25	1	0.0121	0.0605	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	OVCAR4_OVARY	0.25	1	0.0726	TRUE	0	2	0	7	2	TRUE	ACH-000617
OVCAR4_OVARY	EIF4A3--PGLS	2	0	EIF4A3	3531	chr17:78115581:-	PGLS	16147	chr19:17626982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	EIF4A3->chr17:78109013-78120982:-,eukaryotic_translation_initiation_factor_4A3,PGLS->6-phosphogluconolactonase,chr19:17622438-17632097:+	OVCAR4_OVARY	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	FYN--FDPS	2	0	FYN	30940	chr6:111995702:-	FDPS	42692	chr1:155289402:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-,FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase	OVCAR4_OVARY	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	KMT2E--PIK3CG	2	0	KMT2E	25698	chr7:104749675:+	PIK3CG	38287	chr7:106512982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,PIK3CG->ArcherDX_panel,FoundationOne_panel,chr7:106505723-106547590:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_gamma	OVCAR4_OVARY	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	RFX3--GLIS3	1	4	RFX3	1258	chr9:3525747:-	GLIS3	56703	chr9:3932918:-	ONLY_REF_SPLICE	YES	6	15	0.45	0.25	0.0121	0.0484	RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,GLIS3->GLIS_family_zinc_finger_3,chr9:3824127-4348392:-	OVCAR4_OVARY	0.25	0.45	0.0605	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	RNF152--RP11-879F14.1	2	0	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	OVCAR4_OVARY	1	1	0.0242	FALSE	275	472	65	43	0	FALSE	ACH-000617
OVCAR4_OVARY	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0121	0.0484	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVCAR4_OVARY	1	1	0.0605	FALSE	467	2173	244	435	0	FALSE	ACH-000617
OVCAR4_OVARY	UBE2D2--EEF1D	2	0	UBE2D2	1182	chr5:138906197:+	EEF1D	23969	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	OVCAR4_OVARY	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	UBE2H--ZC3HC1	2	0	UBE2H	2497	chr7:129591118:-	ZC3HC1	32126	chr7:129663563:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	LOCAL_REARRANGEMENT:-:[65337],UBE2H->chr7:129470572-129592789:-,ubiquitin_conjugating_enzyme_E2_H,ZC3HC1->chr7:129658126-129691291:-,zinc_finger_C3HC-type_containing_1	OVCAR4_OVARY	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	RP11-410L14.2--DOCK3	1	3	RP11-410L14.2	1176	chr8:100025097:-	DOCK3	6441	chr3:50816106:+	ONLY_REF_SPLICE	NO	12	0	0.25	1	0.0121	0.0363	RP11-410L14.2->chr8:100008991-100025272:-,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	OVCAR4_OVARY	0.25	1	0.0484	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	RP11-973F15.1--RP11-94A24.1	1	3	RP11-973F15.1	1226	chr8:123706120:-	RP11-94A24.1	7870	chr8:123429261:-	ONLY_REF_SPLICE	NO	41	0	0.09	1	0.0121	0.0363	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	OVCAR4_OVARY	0.09	1	0.0484	TRUE	0	2	0	5	1	TRUE	ACH-000617
OVCAR4_OVARY	KMT2E--PIK3CG	1	2	KMT2E	25698	chr7:104749675:+	PIK3CG	35280	chr7:106507995:+	ONLY_REF_SPLICE	YES	78	0	0.04	1	0.0121	0.0242	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,PIK3CG->ArcherDX_panel,FoundationOne_panel,chr7:106505723-106547590:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_gamma	OVCAR4_OVARY	0.04	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	COPS6--TAF6	1	1	COPS6	1793	chr7:99687369:+	TAF6	13119	chr7:99709876:-	ONLY_REF_SPLICE	YES	697	182	0	0.01	0.0121	0.0121	LOCAL_INVERSION:+:-:[14870],COPS6->COP9_signalosome_subunit_6,chr7:99686577-99689823:+,TAF6->TATA-box_binding_protein_associated_factor_6,chr7:99704693-99717464:-	OVCAR4_OVARY	0	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000617
OVCAR4_OVARY	NAMPT--IMMP2L	1	1	NAMPT	2499	chr7:105925274:-	IMMP2L	23664	chr7:111201979:-	ONLY_REF_SPLICE	YES	206	15	0.01	0.12	0.0121	0.0121	NAMPT->chr7:105888731-105926772:-,nicotinamide_phosphoribosyltransferase,IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2	OVCAR4_OVARY	0.01	0.12	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000617
OVCAR4_OVARY	PDP1--RP11-486O13.2	1	1	PDP1	3479	chr8:94930173:+	RP11-486O13.2	18008	chr14:70694289:+	ONLY_REF_SPLICE	NO	36	3	0.05	0.4	0.0121	0.0121	PDP1->chr8:94870035-94938294:+,pyruvate_dehyrogenase_phosphatase_catalytic_subunit_1,RP11-486O13.2->chr14:70653840-70696904:+	OVCAR4_OVARY	0.05	0.4	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	17766	chr12:66345163:+	ONLY_REF_SPLICE	YES	33	116	0.06	0.02	0.0121	0.0121	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	OVCAR4_OVARY	0.02	0.06	0.0242	FALSE	0	0	0	2	0	FALSE	ACH-000617
OVCAR4_OVARY	SMAD7--FAM53C	1	1	SMAD7	4655	chr18:46468851:-	FAM53C	19997	chr5:137677498:+	ONLY_REF_SPLICE	NO	21	121	0.09	0.02	0.0121	0.0121	SMAD7->SMAD_family_member_7,chr18:46446223-46477081:-,FAM53C->chr5:137667624-137685416:+,family_with_sequence_similarity_53_member_C	OVCAR4_OVARY	0.02	0.09	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000617
OVCAR4_OVARY	SMAD7--FAM53C	1	1	SMAD7	4655	chr18:46468851:-	FAM53C	14145	chr5:137669122:+	ONLY_REF_SPLICE	YES	21	0	0.09	1	0.0121	0.0121	SMAD7->SMAD_family_member_7,chr18:46446223-46477081:-,FAM53C->chr5:137667624-137685416:+,family_with_sequence_similarity_53_member_C	OVCAR4_OVARY	0.09	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000617
OVCAR4_OVARY	TPM2--FAM50A	1	1	TPM2	4387	chr9:35685266:-	FAM50A	12955	chrX:153674763:+	ONLY_REF_SPLICE	YES	2203	347	0	0.01	0.0121	0.0121	TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),FAM50A->chrX:153672473-153679002:+,family_with_sequence_similarity_50_member_A	OVCAR4_OVARY	0	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000617
OVCAR4_OVARY	TYMS--GNAS	1	1	TYMS	4286	chr18:662320:+	GNAS	29027	chr20:57470667:+	ONLY_REF_SPLICE	YES	270	1054	0.01	0	0.0121	0.0121	TYMS->chr18:657604-673578:+,thymidylate_synthetase,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	OVCAR4_OVARY	0	0.01	0.0242	FALSE	0	2	0	3	0	FALSE	ACH-000617
OVCAR4_OVARY	WDSUB1--BAZ2B	1	1	WDSUB1	6234	chr2:160128213:-	BAZ2B	64534	chr2:160194283:-	ONLY_REF_SPLICE	YES	22	18	0.08	0.1	0.0121	0.0121	LOCAL_REARRANGEMENT:-:[32180],WDSUB1->WD_repeat,_sterile_alpha_motif_and_U-box_domain_containing_1,chr2:160092304-160143310:-,BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-	OVCAR4_OVARY	0.08	0.1	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000617
OVCAR4_OVARY	YAF2--PPHLN1	1	1	YAF2	1751	chr12:42631401:-	PPHLN1	43594	chr12:42835117:+	ONLY_REF_SPLICE	NO	132	306	0.01	0.01	0.0121	0.0121	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=2,Pancreas=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[98],YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,PPHLN1->chr12:42632249-42853517:+,periphilin_1	OVCAR4_OVARY	0.01	0.01	0.0242	FALSE	0	2	0	4	1	FALSE	ACH-000617
YD38_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	11	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2299	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.2299	FALSE	462	80	0	856	0	FALSE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	PTBP3--RP11-307E17.8	6	2	PTBP3	5173	chr9:115038124:-	RP11-307E17.8	26060	chr9:97101118:+	ONLY_REF_SPLICE	YES	6	0	0.57	1	0.1254	0.0418	PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,RP11-307E17.8->chr9:97094758-97123230:+	YD38_UPPER_AERODIGESTIVE_TRACT	0.57	1	0.1672	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	SNX32--EXOC4	5	0	SNX32	8948	chr11:65623694:+	EXOC4	43440	chr7:133682261:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1045	0	SNX32->chr11:65601112-65624367:+,sorting_nexin_32,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.1045	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	MT-ND1--HDLBP	4	0	MT-ND1	1513	chrM:3819:+	HDLBP	20368	chr2:242192874:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0836	0	MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0836	FALSE	0	0	0	1	0	FALSE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	ASF1B--NDE1	3	0	ASF1B	4858	chr19:14231388:-	NDE1	19840	chr16:15785041:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	ASF1B->anti-silencing_function_1B_histone_chaperone,chr19:14230321-14247768:-,NDE1->chr16:15737124-15820210:+,nudE_neurodevelopment_protein_1	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	PDLIM5--EIF4E	3	0	PDLIM5	2250	chr4:95376535:+	EIF4E	42402	chr4:99823133:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0627	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+,EIF4E->Oncogene{Bushman},chr4:99792835-99851788:-,eukaryotic_translation_initiation_factor_4E	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0627	TRUE	1	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	PRKCSH--IKBKGP1	3	0	PRKCSH	12564	chr19:11561663:+	IKBKGP1	21746	chrX:153868424:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	PRKCSH->chr19:11546109-11561783:+,protein_kinase_C_substrate_80K-H,IKBKGP1->chrX:153868251-153876549:-,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_gamma_pseudogene_1	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	RCC1--RPL19	3	0	RCC1	2175	chr1:28834672:+	RPL19	19808	chr17:37357466:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0627	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RPL19->chr17:37356536-37360980:+,ribosomal_protein_L19	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	RP5-901A4.1--NDUFS8	3	0	RP5-901A4.1	2178	chr11:67796751:-	NDUFS8	12339	chr11:67803720:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0627	0	LOCAL_INVERSION:-:+:[156],RP5-901A4.1->chr11:67792277-67797928:-,NDUFS8->NADH:ubiquinone_oxidoreductase_core_subunit_S8,chr11:67798084-67804111:+	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	SLC1A5--H6PD	3	0	SLC1A5	6557	chr19:47281941:-	H6PD	19800	chr1:9324013:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,H6PD->chr1:9294834-9331396:+,hexose-6-phosphate_dehydrogenase/glucose_1-dehydrogenase	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	SLC3A2--PLEC	3	0	SLC3A2	6112	chr11:62648648:+	PLEC	52044	chr8:144989861:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2,PLEC->chr8:144989321-145050902:-,plectin	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	WDR3--ARID2	3	0	WDR3	2307	chr1:118476012:+	ARID2	39348	chr12:46215209:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	WDR3->WD_repeat_domain_3,chr1:118472343-118509165:+,ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	PDS5A--UBE2K	2	1	PDS5A	2517	chr4:39978060:-	UBE2K	50009	chr4:39776454:+	ONLY_REF_SPLICE	YES	5	15	0.38	0.17	0.0418	0.0209	LOCAL_INVERSION:-:+:[40071],PDS5A->PDS5_cohesin_associated_factor_A,chr4:39824483-39979576:-,UBE2K->chr4:39699664-39784412:+,ubiquitin_conjugating_enzyme_E2_K	YD38_UPPER_AERODIGESTIVE_TRACT	0.17	0.38	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	ALG14--ABCD3	2	0	ALG14	2335	chr1:95530422:-	ABCD3	37720	chr1:94964158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-,ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	1	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	B3GNTL1--DDX17	2	0	B3GNTL1	2770	chr17:81006347:-	DDX17	27967	chr22:38897285:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	ENO1--ILF2	2	0	ENO1	7885	chr1:8927176:-	ILF2	18584	chr1:153641033:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,ILF2->chr1:153634512-153643524:-,interleukin_enhancer_binding_factor_2	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	HIAT1--XPO4	2	0	HIAT1	1220	chr1:100503872:+	XPO4	18600	chr13:21442840:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	HIAT1->chr1:100503653-100548933:+,XPO4->chr13:21351469-21477187:-,exportin_4	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	HMGA2--OVOL2	2	0	HMGA2	3338	chr12:66221867:+	OVOL2	35947	chr20:17937681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,OVOL2->chr20:17937623-18039832:-,ovo_like_zinc_finger_2	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	IL6R--TNFRSF21	2	0	IL6R	5533	chr1:154407632:+	TNFRSF21	25348	chr6:47202634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	HGNC_GENEFAM,IL6R->chr1:154377669-154441926:+,interleukin_6_receptor,TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	MCRS1--NEDD4L	2	0	MCRS1	2432	chr12:49960505:-	NEDD4L	47617	chr18:56024426:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	MCRS1->chr12:49950327-49961936:-,microspherule_protein_1,NEDD4L->chr18:55711599-56068772:+,neural_precursor_cell_expressed,_developmentally_down-regulated_4-like,_E3_ubiquitin_protein_ligase	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	PRPF4B--TPM4	2	0	PRPF4B	10771	chr6:4049340:+	TPM4	30309	chr19:16191725:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	PRPF4B->Oncogene{Bushman},chr6:4021501-4065217:+,pre-mRNA_processing_factor_4B,TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	PTK2--HNRNPH1	2	0	PTK2	2092	chr8:142011224:-	HNRNPH1	70473	chr5:179048398:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	RANGAP1--DSP	2	0	RANGAP1	11873	chr22:41653952:-	DSP	29621	chr6:7563969:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	RANGAP1->Ran_GTPase_activating_protein_1,chr22:41641615-41682255:-,DSP->chr6:7541808-7586950:+,desmoplakin	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	RCC1--SRP54	2	0	RCC1	2175	chr1:28834672:+	SRP54	33052	chr14:35487898:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SRP54->chr14:35451163-35498773:+,signal_recognition_particle_54kDa	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	SMDT1--TCF20	2	0	SMDT1	1264	chr22:42475958:+	TCF20	8864	chr22:42611347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	LOCAL_INVERSION:+:-:[75731],SMDT1->chr22:42475695-42480288:+,single-pass_membrane_protein_with_aspartate-rich_tail_1,TCF20->chr22:42556019-42739622:-,transcription_factor_20_(AR1)	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
YD38_UPPER_AERODIGESTIVE_TRACT	TOR1AIP2--CLTB	2	0	TOR1AIP2	9126	chr1:179834571:-	CLTB	31295	chr5:175837304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	TOR1AIP2->chr1:179809102-179846938:-,torsin_1A_interacting_protein_2,CLTB->chr5:175819456-175843570:-,clathrin_light_chain_B	YD38_UPPER_AERODIGESTIVE_TRACT	1	1	0.0418	TRUE	0	0	0	1	0	TRUE	ACH-000762
MORCPR_LUNG	TIMM23B--LINC00843	38	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.4871	0.2564	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MORCPR_LUNG	0.98	1	0.7435	TRUE	508	994	45	981	0	FALSE	ACH-000851
MORCPR_LUNG	NPM1P24--SET	36	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4615	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MORCPR_LUNG	1	1	0.4615	TRUE	0	0	0	434	0	FALSE	ACH-000851
MORCPR_LUNG	ARHGEF10--CENPF	24	13	ARHGEF10	3311	chr8:1791602:+	CENPF	69819	chr1:214830296:+	INCL_NON_REF_SPLICE	YES	19	512	0.66	0.07	0.3077	0.1667	ARHGEF10->Rho_guanine_nucleotide_exchange_factor_10,chr8:1772142-1906807:+,CENPF->Oncogene{Bushman},centromere_protein_F,chr1:214776538-214837931:+	MORCPR_LUNG	0.07	0.66	0.4744	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	MT-TA--MT-TC	23	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2948	0.0128	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MORCPR_LUNG	1	1	0.3076	FALSE	462	80	0	856	0	FALSE	ACH-000851
MORCPR_LUNG	MIPEPP3--ABHD12	23	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2948	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	MORCPR_LUNG	1	1	0.2948	TRUE	64	202	9	44	0	FALSE	ACH-000851
MORCPR_LUNG	TIMM23--RP11-464F9.1	19	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	296	14	0.07	0.63	0.2436	0.0641	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MORCPR_LUNG	0.07	0.63	0.3077	TRUE	519	3926	326	965	0	FALSE	ACH-000851
MORCPR_LUNG	SLC1A5--MT-ND4L	19	3	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1523	0	0.01	1	0.2436	0.0385	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MORCPR_LUNG	0.01	1	0.2821	FALSE	0	0	0	189	0	FALSE	ACH-000851
MORCPR_LUNG	SLC7A5--MT-ND4L	13	15	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2968	0	0.01	1	0.1667	0.1923	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MORCPR_LUNG	0.01	1	0.359	FALSE	0	0	0	23	0	FALSE	ACH-000851
MORCPR_LUNG	ZNF654--HMGB2	15	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1923	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MORCPR_LUNG	1	1	0.1923	TRUE	0	0	0	518	0	FALSE	ACH-000851
MORCPR_LUNG	RP11-114H23.1--RP11-114H23.2	10	10	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	4	0	0.83	1	0.1282	0.1282	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	MORCPR_LUNG	0.83	1	0.2564	FALSE	81	155	12	160	0	FALSE	ACH-000851
MORCPR_LUNG	CAPZB--UBR4	9	0	CAPZB	1137	chr1:19811930:-	UBR4	76672	chr1:19446842:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1154	0	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4	MORCPR_LUNG	1	1	0.1154	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	RP11-96H19.1--RP11-446N19.1	6	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.0769	0.0897	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MORCPR_LUNG	0.87	1	0.1666	FALSE	515	4851	409	746	0	FALSE	ACH-000851
MORCPR_LUNG	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0897	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	MORCPR_LUNG	1	1	0.0897	TRUE	1	39	0	134	39	FALSE	ACH-000851
MORCPR_LUNG	RP11-680G10.1--GSE1	6	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	72	1	0.1	0.0769	0.0256	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MORCPR_LUNG	0.1	1	0.1025	TRUE	465	1949	224	605	0	FALSE	ACH-000851
MORCPR_LUNG	RP4-565E6.1--HYDIN	5	5	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0641	0.0641	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	MORCPR_LUNG	1	1	0.1282	TRUE	456	1387	91	133	0	FALSE	ACH-000851
MORCPR_LUNG	SLC7A5--MT-ND1	5	1	SLC7A5	13719	chr16:87864490:-	MT-ND1	17596	chrM:3322:+	INCL_NON_REF_SPLICE	YES	3320	0	0	1	0.0641	0.0128	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	MORCPR_LUNG	0	1	0.0769	FALSE	0	0	0	11	0	FALSE	ACH-000851
MORCPR_LUNG	RP11-275N1.1--NEBL	5	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0641	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	MORCPR_LUNG	1	1	0.0641	TRUE	0	0	0	21	0	FALSE	ACH-000851
MORCPR_LUNG	ATG7--LPIN1	4	1	ATG7	26330	chr3:11406208:+	LPIN1	40281	chr2:11853882:+	ONLY_REF_SPLICE	YES	18	0	0.22	1	0.0513	0.0128	ATG7->autophagy_related_7,chr3:11313995-11599139:+,LPIN1->chr2:11817721-11967535:+,lipin_1	MORCPR_LUNG	0.22	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	RP11-123O10.4--GRIP1	4	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0513	0.0128	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MORCPR_LUNG	1	1	0.0641	FALSE	416	2512	207	587	0	FALSE	ACH-000851
MORCPR_LUNG	EIF1--RPL5	4	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	MORCPR_LUNG	1	1	0.0513	TRUE	0	0	0	39	0	FALSE	ACH-000851
MORCPR_LUNG	SIK2--RPLP1	4	0	SIK2	15849	chr11:111594434:+	RPLP1	26027	chr15:69745157:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0	SIK2->chr11:111473115-111601577:+,salt_inducible_kinase_2,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	MORCPR_LUNG	1	1	0.0513	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	RP11-96H19.1--RP11-446N19.1	2	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0256	0.0897	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MORCPR_LUNG	0.82	1	0.1153	FALSE	467	2173	244	435	0	FALSE	ACH-000851
MORCPR_LUNG	PARP1--KRT7	3	0	PARP1	18048	chr1:226555900:-	KRT7	33080	chr12:52632503:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	PARP1->chr1:226548392-226595780:-,poly(ADP-ribose)_polymerase_1,KRT7->chr12:52626304-52645970:+,keratin_7	MORCPR_LUNG	1	1	0.0385	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	RP11-275N1.1--NEBL	2	4	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	3	26	0.67	0.19	0.0256	0.0513	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	MORCPR_LUNG	0.19	0.67	0.0769	TRUE	0	2	0	25	2	FALSE	ACH-000851
MORCPR_LUNG	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.82	1	0.0128	0.1026	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MORCPR_LUNG	0.82	1	0.1154	FALSE	407	2205	196	549	0	FALSE	ACH-000851
MORCPR_LUNG	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0128	0.1026	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MORCPR_LUNG	0.82	1	0.1154	FALSE	192	492	57	212	0	FALSE	ACH-000851
MORCPR_LUNG	RP11-680G10.1--GSE1	2	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	25	1	0.17	0.0256	0.0385	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MORCPR_LUNG	0.17	1	0.0641	TRUE	458	1351	185	561	0	FALSE	ACH-000851
MORCPR_LUNG	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	8	211	0.27	0.01	0.0256	0.0128	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MORCPR_LUNG	0.01	0.27	0.0384	FALSE	16	356	14	466	0	FALSE	ACH-000851
MORCPR_LUNG	ADAM9--MARK3	2	0	ADAM9	14387	chr8:38899636:+	MARK3	53055	chr14:103958114:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	MORCPR_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	AKAP13--APP	2	0	AKAP13	1228	chr15:85924029:+	APP	75385	chr21:27394358:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	MORCPR_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	ATP11A--TUBGCP3	2	0	ATP11A	1127	chr13:113344769:+	TUBGCP3	64507	chr13:113173357:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,TUBGCP3->chr13:113139325-113242481:-,tubulin_gamma_complex_associated_protein_3	MORCPR_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	RPRD1A--MOCOS	2	0	RPRD1A	1323	chr18:33647217:-	MOCOS	33365	chr18:33828885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,MOCOS->chr18:33767482-33852120:+,molybdenum_cofactor_sulfurase	MORCPR_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	SETD5--BPHL	2	0	SETD5	24283	chr3:9506356:+	BPHL	46516	chr6:3140620:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	SETD5->SET_domain_containing_5,chr3:9439299-9520924:+,BPHL->biphenyl_hydrolase-like_(serine_hydrolase),chr6:3118608-3153812:+	MORCPR_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	SNX17--CTD-2572N17.1	1	4	SNX17	3790	chr2:27596178:+	CTD-2572N17.1	11707	chr11:42262668:-	ONLY_REF_SPLICE	YES	301	0	0.02	1	0.0128	0.0513	SNX17->chr2:27593389-27599995:+,sorting_nexin_17,CTD-2572N17.1->chr11:42204842-42275262:-	MORCPR_LUNG	0.02	1	0.0641	TRUE	0	0	0	1	0	FALSE	ACH-000851
MORCPR_LUNG	SPEN--EZH2	2	0	SPEN	2608	chr1:16199631:+	EZH2	43252	chr7:148512638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	MORCPR_LUNG	1	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000851
MORCPR_LUNG	TANK--PSMD14	2	0	TANK	2344	chr2:162016995:+	PSMD14	37370	chr2:162251589:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0256	0	NEIGHBORS[71817],TANK->TRAF_family_member_associated_NFKB_activator,chr2:161993419-162092732:+,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	MORCPR_LUNG	1	1	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-000851
MORCPR_LUNG	RORA--ANXA2	1	2	RORA	13827	chr15:60884586:-	ANXA2	59082	chr15:60656722:-	ONLY_REF_SPLICE	NO	30	3259	0.09	0	0.0128	0.0256	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	MORCPR_LUNG	0	0.09	0.0384	FALSE	2	1	0	8	0	FALSE	ACH-000851
MORCPR_LUNG	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	165	1	0.02	0.0128	0.0256	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MORCPR_LUNG	0.02	1	0.0384	TRUE	64	13	3	59	0	FALSE	ACH-000851
MORCPR_LUNG	ATP11A--F7	1	1	ATP11A	1127	chr13:113344769:+	F7	50386	chr13:113768066:+	ONLY_REF_SPLICE	YES	67	0	0.03	1	0.0128	0.0128	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,F7->chr13:113760105-113774995:+,coagulation_factor_VII	MORCPR_LUNG	0.03	1	0.0256	TRUE	0	0	0	1	0	FALSE	ACH-000851
MORCPR_LUNG	ATP11A--F7	1	1	ATP11A	1127	chr13:113344769:+	F7	49225	chr13:113765004:+	ONLY_REF_SPLICE	NO	67	0	0.03	1	0.0128	0.0128	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,F7->chr13:113760105-113774995:+,coagulation_factor_VII	MORCPR_LUNG	0.03	1	0.0256	TRUE	0	0	0	1	0	FALSE	ACH-000851
MORCPR_LUNG	BOD1--DOCK2	1	1	BOD1	1461	chr5:173043203:-	DOCK2	36998	chr5:169230062:+	ONLY_REF_SPLICE	YES	200	0	0.01	1	0.0128	0.0128	{Klijn_CCL:Lung=1},BOD1->biorientation_of_chromosomes_in_cell_division_1,chr5:173034517-173043663:-,DOCK2->chr5:169064251-169510386:+,dedicator_of_cytokinesis_2	MORCPR_LUNG	0.01	1	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-000851
MORCPR_LUNG	G6PD--VPS72	1	1	G6PD	2537	chrX:153774251:-	VPS72	13578	chr1:151158426:-	ONLY_REF_SPLICE	YES	1260	490	0	0	0.0128	0.0128	G6PD->chrX:153759606-153775787:-,glucose-6-phosphate_dehydrogenase,VPS72->chr1:151142463-151167797:-,vacuolar_protein_sorting_72_homolog	MORCPR_LUNG	0	0	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-000851
MORCPR_LUNG	IGF1R--CERS3	1	1	IGF1R	22644	chr15:99467913:+	CERS3	58777	chr15:100943070:-	ONLY_REF_SPLICE	YES	118	0	0.02	1	0.0128	0.0128	IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor,CERS3->ceramide_synthase_3,chr15:100940600-101085200:-	MORCPR_LUNG	0.02	1	0.0256	TRUE	0	0	0	1	0	FALSE	ACH-000851
MORCPR_LUNG	INVS--TEX10	1	1	INVS	12360	chr9:102992109:+	TEX10	42590	chr9:103072661:-	ONLY_REF_SPLICE	YES	32	150	0.06	0.01	0.0128	0.0128	GTEx_v2:{count=2;pct=0.02%;dist=Prostate=1,Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:+:-:[1077],INVS->chr9:102861538-103063282:+,inversin,TEX10->chr9:103064359-103115221:-,testis_expressed_10	MORCPR_LUNG	0.01	0.06	0.0256	FALSE	0	0	0	1	0	FALSE	ACH-000851
MORCPR_LUNG	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	11	86	0.15	0.02	0.0128	0.0128	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MORCPR_LUNG	0.02	0.15	0.0256	FALSE	0	5	0	14	0	FALSE	ACH-000851
MORCPR_LUNG	VPS13B--STK3	1	1	VPS13B	18031	chr8:100205285:+	STK3	107748	chr8:99560389:-	ONLY_REF_SPLICE	NO	18	170	0.1	0.01	0.0128	0.0128	GTEx&tcga_normals:3/3694=0.08%,GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Whole_Blood=1},LOCAL_INVERSION:+:-:[70439],VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast),STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3	MORCPR_LUNG	0.01	0.1	0.0256	FALSE	0	1	0	1	0	FALSE	ACH-000851
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLAA--MIR31HG	259	87	PLAA	9051	chr9:26919308:-	MIR31HG	23008	chr9:21455943:-	ONLY_REF_SPLICE	YES	22	0	0.94	1	2.6445	0.8883	PLAA->chr9:26904081-26947461:-,phospholipase_A2_activating_protein,MIR31HG->MIR31_host_gene,chr9:21455641-21559668:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	3.5328	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RARA--PML	173	36	RARA	6149	chr17:38487648:+	PML	31651	chr15:74326819:+	ONLY_REF_SPLICE	YES	17	65	0.92	0.76	1.7664	0.3676	YOSHIHARA_TCGA_num_samples[LAML:10],chimerdb_omim:{acutepromyelocyticleukemia},chimerdb_omim:{promyelocyticleukemia},chimerdb_pubmed{acute promyelocytic leukemia (APL),Acute promyelocytic leukemia,acute promyelocytic leukemia},RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,PML->Oncogene{Bushman},chr15:74287014-74340153:+,promyelocytic_leukemia	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.92	2.134	TRUE	0	5	0	1	4	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	158	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.6133	0.2859	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.8992	TRUE	508	994	45	981	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	121	121	PVT1	1202	chr8:128806980:+	CCDC26	28642	chr8:130692295:-	INCL_NON_REF_SPLICE	YES	110	0	0.69	1	1.2355	1.2355	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	2.471	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	101	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	292	6	0.26	0.95	1.0313	0.0306	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.95	1.0619	TRUE	519	3926	326	965	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	85	52	PVT1	1202	chr8:128806980:+	CCDC26	31947	chr8:130411930:-	ONLY_REF_SPLICE	YES	110	7	0.55	0.95	0.8679	0.531	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.95	1.3989	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	59	21	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	23	21	0.78	0.79	0.6024	0.2144	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.79	0.8168	TRUE	181	1564	124	196	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PML--RARA	51	23	PML	10929	chr15:74325755:+	RARA	33681	chr17:38504568:+	ONLY_REF_SPLICE	YES	64	18	0.54	0.8	0.5207	0.2348	Mitelman{Heart=2,AL_bi=2,Skin=2,AML=8},YOSHIHARA_TCGA_num_samples[LAML:15],chimerdb_omim:{acutepromyelocyticleukemia},chimerdb_pubmed{Acute leukemia,acute promyelocytic leukemia(APL),promyelocytic leukaemia,Acute promyelocytic leukemia,Acute myeloid leukemia (AML),acute promyelocytic leukemia (APL), acute myeloid leukemia (AML),acute promyelocytic leukemia (APL),acute eosinophilic granulocytic leukemia,promyelocytic leukemia,myelodysplastic syndromes (MDS),chronic myeloid leukemia, acute lymphoblastic leukemia,Acute promyelocytic leukemia (APML),childhood acute myeloid leukemia (AML),APL,acute promyelocytic leukemia(APL),  acute myeloid leukemia (AML),acute myelogenous leukemia(AML),acute promyelocytic leukemia,Acute promyelocytic leukemia(APL)like disease,Extramedullary disease (EMD), acute promyelocytic leukemia (APL),Acute Promyelocytic Leukemia(APL),acute promyelocytic leukemia (PML),Acute promyelocytic leukemia (APL) ,acute promyelocytic leukemia (APL) ,acute myeloid leukemia(AML),chromosomal anomalies (most commonly translocations) in lymphoma and leukemia,acute myeloid leukemia, chronic myelogenous leukemia,human malignancies,Acute promyelocytic leukaemia (APL), minimal residual disease (MRD), acute myeloid leukaemia (AML),Acute promyelocytic leukemia (APL),chronic myeloid leukemia (CML), acute myeloid leukemia (AML),Acute promyelocytic leukaemia (APL),acute promyelocytic leukaemia,acute myeloid leukemia (AML), acute myelogenous leukemia,acute promyelocytic leukaemia (APL),acute promyelocytic leukemias (APLM3 eight hypergranular, four microgranular),Thyroid carcinoma, myeloid leukemia,severalleukaemia,promyelocytic leukemia (APL),Acute promyelocytic leukaemia, sensitive to treatment with all transretinoic acid, good prognosis,leukemia,acute promyelocytic leukemias,childhood acute lymphoblastic leukemia},PML->Oncogene{Bushman},chr15:74287014-74340153:+,promyelocytic_leukemia,RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.8	0.7555	TRUE	0	7	0	1	7	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	8	126	PVT1	2457	chr8:128808254:+	CCDC26	28642	chr8:130692295:-	INCL_NON_REF_SPLICE	YES	108	0	0.55	1	0.0817	1.2865	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	1.3682	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OR51S1--TP53I11	39	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3982	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3982	TRUE	402	216	10	229	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	39	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3982	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3982	TRUE	0	0	0	518	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	24	53	MT-CO3	1123	chrM:9329:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	4	0	0.95	1	0.2451	0.5412	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.7863	FALSE	189	492	56	216	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	137	MT-ND4	1192	chrM:10951:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	YES	16	0	0.9	1	0.0306	1.3989	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	1.4295	FALSE	344	826	44	306	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	136	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	NO	6	0	0.96	1	0.0306	1.3886	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	1.4192	FALSE	344	826	44	306	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	34	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3472	0.0408	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.388	FALSE	462	80	0	856	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	31	0	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3165	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3165	FALSE	101	855	57	72	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	15	52	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	5	0.93	0.93	0.1532	0.531	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.93	0.6842	FALSE	189	492	56	216	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	98	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	0	0.96	1	0.0306	1.0006	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	1.0312	FALSE	344	821	44	306	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	22	21	PVT1	1202	chr8:128806980:+	CCDC26	34197	chr8:130365226:-	ONLY_REF_SPLICE	YES	110	14	0.28	0.75	0.2246	0.2144	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.75	0.439	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	95	MT-ND4	1178	chrM:10937:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	14	0	0.88	1	0.0306	0.97	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	1.0006	FALSE	344	826	44	306	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLAA--MIR31HG	3	87	PLAA	9051	chr9:26919308:-	MIR31HG	23012	chr9:21455939:-	INCL_NON_REF_SPLICE	YES	22	0	0.8	1	0.0306	0.8883	PLAA->chr9:26904081-26947461:-,phospholipase_A2_activating_protein,MIR31HG->MIR31_host_gene,chr9:21455641-21559668:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.9189	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAGH--PCNT	22	7	HAGH	11804	chr16:1859239:-	PCNT	67532	chr21:47865197:+	ONLY_REF_SPLICE	YES	10	42	0.74	0.41	0.2246	0.0715	HAGH->chr16:1845621-1877195:-,hydroxyacylglutathione_hydrolase,PCNT->chr21:47744036-47865682:+,pericentrin	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.74	0.2961	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLAA--MIR31HG	2	87	PLAA	11947	chr9:26913877:-	MIR31HG	23008	chr9:21455943:-	ONLY_REF_SPLICE	NO	23	0	0.79	1	0.0204	0.8883	PLAA->chr9:26904081-26947461:-,phospholipase_A2_activating_protein,MIR31HG->MIR31_host_gene,chr9:21455641-21559668:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	0.9087	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	8	55	PVT1	2457	chr8:128808254:+	CCDC26	31947	chr8:130411930:-	ONLY_REF_SPLICE	YES	108	7	0.37	0.9	0.0817	0.5616	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.9	0.6433	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	21	2	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	157	0	0.13	1	0.2144	0.0204	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.2348	TRUE	61	154	6	19	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX8--IDI2	18	6	STX8	8513	chr17:9448489:-	IDI2	20050	chr10:1071832:-	INCL_NON_REF_SPLICE	YES	68	0	0.26	1	0.1838	0.0613	STX8->chr17:9153788-9479908:-,syntaxin_8,IDI2->chr10:1064847-1071799:-,isopentenyl-diphosphate_delta_isomerase_2	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.2451	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	16	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	21	19	0.58	0.6	0.1634	0.1327	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	0.6	0.2961	TRUE	267	562	48	632	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	19	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.194	0.0102	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2042	FALSE	499	1288	110	792	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	52	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	5	0.92	0.92	0.0613	0.531	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	0.92	0.5923	FALSE	189	492	56	216	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	4	56	PVT1	2520	chr8:128808317:+	CCDC26	31947	chr8:130411930:-	ONLY_REF_SPLICE	YES	106	7	0.36	0.9	0.0408	0.5718	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.9	0.6126	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	4	54	PVT1	1202	chr8:128806980:+	CCDC26	30899	chr8:130492936:-	ONLY_REF_SPLICE	YES	110	7	0.35	0.89	0.0408	0.5514	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.89	0.5922	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	2	57	PVT1	2457	chr8:128808254:+	CCDC26	30899	chr8:130492936:-	ONLY_REF_SPLICE	YES	108	7	0.35	0.89	0.0204	0.582	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.89	0.6024	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNM2--RP11-393J16.4	13	9	DNM2	1325	chr19:10829079:+	RP11-393J16.4	42027	chr10:38269217:+	ONLY_REF_SPLICE	YES	101	0	0.18	1	0.1327	0.0919	DNM2->chr19:10828755-10944164:+,dynamin_2,RP11-393J16.4->chr10:38265753-38281395:+	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPFIBP1--CCDC91	13	8	PPFIBP1	4200	chr12:27731172:+	CCDC91	64172	chr12:28603094:+	ONLY_REF_SPLICE	YES	4	59	0.84	0.26	0.1327	0.0817	PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.84	0.2144	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	12	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	20	19	0.5	0.51	0.1225	0.0817	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.51	0.2042	TRUE	267	562	48	632	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAGH--PCNT	11	12	HAGH	11804	chr16:1859239:-	PCNT	66942	chr21:47864607:+	ONLY_REF_SPLICE	YES	10	31	0.7	0.43	0.1123	0.1225	HAGH->chr16:1845621-1877195:-,hydroxyacylglutathione_hydrolase,PCNT->chr21:47744036-47865682:+,pericentrin	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.7	0.2348	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	40	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.0306	0.4084	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.439	FALSE	344	821	44	306	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	12	0	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1225	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1225	FALSE	0	0	0	189	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	11	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1123	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1123	FALSE	0	0	0	189	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	18	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	481	0	0.05	1	0.0613	0.1838	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.2451	FALSE	344	827	44	306	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	29	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	14	0	0.7	1	0.0306	0.2961	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	1	0.3267	FALSE	344	826	44	306	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	5	21	PVT1	1202	chr8:128806980:+	CCDC26	34192	chr8:130365231:-	INCL_NON_REF_SPLICE	YES	110	14	0.19	0.65	0.0511	0.2144	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.65	0.2655	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	20	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	5	0	0.83	1	0.0511	0.2042	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.2553	FALSE	189	492	56	216	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	9	3	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.92	0.0919	0.0306	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1225	TRUE	0	1	0	84	1	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	9	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.69	1	0.0919	0.0204	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	0.1123	FALSE	189	492	56	216	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	25	MT-CO3	1035	chrM:9241:+	MT-ATP6	5316	chrM:9058:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.9	0.0306	0.2553	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.2859	FALSE	189	492	56	216	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	17	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	247	0	0.08	1	0.0511	0.1736	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.2247	FALSE	344	827	44	306	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	23	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0306	0.2348	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.2654	FALSE	189	492	56	216	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	19	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0408	0.194	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.2348	FALSE	189	492	56	216	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	14	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	16	0	0.54	1	0.0511	0.1429	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	1	0.194	FALSE	344	826	44	306	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	3	21	PVT1	2520	chr8:128808317:+	CCDC26	34197	chr8:130365226:-	ONLY_REF_SPLICE	YES	106	14	0.18	0.63	0.0306	0.2144	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.63	0.245	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0613	0.0817	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.143	FALSE	499	1288	110	792	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	8	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0817	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0817	TRUE	0	0	0	434	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PML--RARA	2	23	PML	10937	chr15:74325763:+	RARA	33681	chr17:38504568:+	ONLY_REF_SPLICE	YES	70	18	0.26	0.58	0.0204	0.2348	Mitelman{Heart=2,AL_bi=2,Skin=2,AML=8},YOSHIHARA_TCGA_num_samples[LAML:15],chimerdb_omim:{acutepromyelocyticleukemia},chimerdb_pubmed{Acute leukemia,acute promyelocytic leukemia(APL),promyelocytic leukaemia,Acute promyelocytic leukemia,Acute myeloid leukemia (AML),acute promyelocytic leukemia (APL), acute myeloid leukemia (AML),acute promyelocytic leukemia (APL),acute eosinophilic granulocytic leukemia,promyelocytic leukemia,myelodysplastic syndromes (MDS),chronic myeloid leukemia, acute lymphoblastic leukemia,Acute promyelocytic leukemia (APML),childhood acute myeloid leukemia (AML),APL,acute promyelocytic leukemia(APL),  acute myeloid leukemia (AML),acute myelogenous leukemia(AML),acute promyelocytic leukemia,Acute promyelocytic leukemia(APL)like disease,Extramedullary disease (EMD), acute promyelocytic leukemia (APL),Acute Promyelocytic Leukemia(APL),acute promyelocytic leukemia (PML),Acute promyelocytic leukemia (APL) ,acute promyelocytic leukemia (APL) ,acute myeloid leukemia(AML),chromosomal anomalies (most commonly translocations) in lymphoma and leukemia,acute myeloid leukemia, chronic myelogenous leukemia,human malignancies,Acute promyelocytic leukaemia (APL), minimal residual disease (MRD), acute myeloid leukaemia (AML),Acute promyelocytic leukemia (APL),chronic myeloid leukemia (CML), acute myeloid leukemia (AML),Acute promyelocytic leukaemia (APL),acute promyelocytic leukaemia,acute myeloid leukemia (AML), acute myelogenous leukemia,acute promyelocytic leukaemia (APL),acute promyelocytic leukemias (APLM3 eight hypergranular, four microgranular),Thyroid carcinoma, myeloid leukemia,severalleukaemia,promyelocytic leukemia (APL),Acute promyelocytic leukaemia, sensitive to treatment with all transretinoic acid, good prognosis,leukemia,acute promyelocytic leukemias,childhood acute lymphoblastic leukemia},PML->Oncogene{Bushman},chr15:74287014-74340153:+,promyelocytic_leukemia,RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.58	0.2552	TRUE	0	7	0	1	7	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	7	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3305	0	0	1	0.0715	0.0102	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0817	FALSE	13	9	0	364	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	6	3	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.9	0.0613	0.0306	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.0919	TRUE	0	1	0	84	1	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0613	0.0102	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0715	FALSE	499	1288	110	792	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP5D1--AEBP2	6	1	PPP5D1	1318	chr19:47104140:-	AEBP2	22562	chr12:19665332:+	ONLY_REF_SPLICE	YES	3	162	0.7	0.04	0.0613	0.0102	PPP5D1->PPP5_tetratricopeptide_repeat_domain_containing_1,chr19:46984053-47104457:-,AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.7	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--CCDC26	1	21	PVT1	2457	chr8:128808254:+	CCDC26	34197	chr8:130365226:-	ONLY_REF_SPLICE	NO	108	14	0.17	0.61	0.0102	0.2144	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.61	0.2246	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	8	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	18	0	0.4	1	0.0408	0.0817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.1225	FALSE	344	826	44	306	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0.0306	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0817	FALSE	462	80	0	856	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGFR2--COL14A1	5	2	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0511	0.0204	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0715	TRUE	0	0	0	32	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	5	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3309	0	0	1	0.0511	0.0102	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0613	FALSE	13	9	0	364	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPO--MT-ND2	5	1	MPO	2837	chr17:56356460:-	MT-ND2	13505	chrM:4832:+	INCL_NON_REF_SPLICE	YES	10999	9111	0	0	0.0511	0.0102	MPO->chr17:56347217-56358296:-,myeloperoxidase,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0613	FALSE	0	0	0	1	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	5	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.0408	0.0511	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.0919	FALSE	189	492	56	216	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	8	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	20	19	0.35	0.37	0.0306	0.0817	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.37	0.1123	TRUE	267	562	48	632	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0511	FALSE	183	104	9	328	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	8	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	5	0	0.69	1	0.0306	0.0817	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	0.1123	FALSE	189	492	56	216	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0511	FALSE	189	492	56	216	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	5	0	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0511	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0511	FALSE	101	855	57	72	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0.0408	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0816	FALSE	499	1288	110	792	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	6	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	7	0	0.56	1	0.0306	0.0613	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.0919	FALSE	189	492	56	216	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAGH--PCNT	3	5	HAGH	11288	chr16:1859755:-	PCNT	66942	chr21:47864607:+	ONLY_REF_SPLICE	YES	25	31	0.24	0.21	0.0306	0.0511	HAGH->chr16:1845621-1877195:-,hydroxyacylglutathione_hydrolase,PCNT->chr21:47744036-47865682:+,pericentrin	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.24	0.0817	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	5	MT-CO3	1173	chrM:9379:+	MT-ATP6	5450	chrM:9192:+	INCL_NON_REF_SPLICE	YES	6	0	0.57	1	0.0306	0.0511	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.0817	FALSE	189	492	56	216	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	1	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	7	0	0.42	1	0.0408	0.0102	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.051	FALSE	189	492	56	216	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	1	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.0408	0.0102	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.051	FALSE	344	821	44	306	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	0	0	0	81	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	0	0	0	81	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1146	chrM:8672:+	MT-CO1	5945	chrM:7167:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	FALSE	183	104	9	328	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	4	0	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	FALSE	101	855	57	72	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	4	0	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	FALSE	101	855	57	72	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RARA--PML	4	0	RARA	2263	chr17:38474700:+	PML	31651	chr15:74326819:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	YOSHIHARA_TCGA_num_samples[LAML:10],chimerdb_omim:{acutepromyelocyticleukemia},chimerdb_omim:{promyelocyticleukemia},chimerdb_pubmed{acute promyelocytic leukemia (APL),Acute promyelocytic leukemia,acute promyelocytic leukemia},RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,PML->Oncogene{Bushman},chr15:74287014-74340153:+,promyelocytic_leukemia	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX8--IDI2	4	0	STX8	8513	chr17:9448489:-	IDI2	22290	chr10:1068715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	STX8->chr17:9153788-9479908:-,syntaxin_8,IDI2->chr10:1064847-1071799:-,isopentenyl-diphosphate_delta_isomerase_2	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	3	3	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	23	17	0.21	0.26	0.0306	0.0306	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.26	0.0612	TRUE	20	16	0	28	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	3	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	7	0	0.46	1	0.0306	0.0306	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	1	0.0612	FALSE	189	492	56	216	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAGH--PCNT	2	6	HAGH	11288	chr16:1859755:-	PCNT	66058	chr21:47863723:+	ONLY_REF_SPLICE	YES	25	23	0.24	0.26	0.0204	0.0613	HAGH->chr16:1845621-1877195:-,hydroxyacylglutathione_hydrolase,PCNT->chr21:47744036-47865682:+,pericentrin	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.26	0.0817	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	3	2	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	157	0	0.03	1	0.0306	0.0204	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.051	TRUE	30	67	4	15	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GATAD2A--CTC-575C13.2	3	1	GATAD2A	1313	chr19:19496947:+	CTC-575C13.2	26371	chr19:20434858:-	INCL_NON_REF_SPLICE	YES	19	1	0.17	0.8	0.0306	0.0102	GATAD2A->GATA_zinc_finger_domain_containing_2A,chr19:19496635-19619740:+,CTC-575C13.2->chr19:20434801-20435377:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.8	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0306	FALSE	183	104	9	328	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0306	FALSE	183	104	9	328	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0306	FALSE	189	492	56	216	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MPO	3	0	MT-ND1	1272	chrM:3578:+	MPO	10479	chr17:56350836:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MPO->chr17:56347217-56358296:-,myeloperoxidase	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0306	FALSE	0	0	0	1	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0306	FALSE	499	1288	110	792	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAGH--PCNT	2	3	HAGH	8093	chr16:1866894:-	PCNT	67532	chr21:47865197:+	ONLY_REF_SPLICE	YES	34	42	0.13	0.11	0.0204	0.0306	HAGH->chr16:1845621-1877195:-,hydroxyacylglutathione_hydrolase,PCNT->chr21:47744036-47865682:+,pericentrin	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.13	0.051	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	2	1	KANSL1	7536	chr17:44248221:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	24	17	0.11	0.15	0.0204	0.0102	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.15	0.0306	TRUE	0	0	0	6	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--LINC00977	2	1	PVT1	1202	chr8:128806980:+	LINC00977	30675	chr8:130229652:-	ONLY_REF_SPLICE	YES	110	2	0.03	0.6	0.0204	0.0102	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.6	0.0306	TRUE	0	0	0	1	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUGP1--ZNF257	2	1	SUGP1	10005	chr19:19407798:-	ZNF257	23040	chr19:22255611:+	ONLY_REF_SPLICE	YES	76	7	0.04	0.3	0.0204	0.0102	SUGP1->SURP_and_G-patch_domain_containing_1,chr19:19386827-19431653:-,ZNF257->chr19:22235254-22274282:+,zinc_finger_protein_257	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.3	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAPZA1--ZNF131	2	0	CAPZA1	1711	chr1:113162505:+	ZNF131	26416	chr5:43122141:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CAPZA1->capping_actin_protein_of_muscle_Z-line_alpha_subunit_1,chr1:113161795-113214241:+,ZNF131->chr5:43065278-43192123:+,zinc_finger_protein_131	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ESYT1--PHB2	2	0	ESYT1	7025	chr12:56526585:+	PHB2	19558	chr12:7078740:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ESYT1->chr12:56512034-56538455:+,extended_synaptotagmin_protein_1,PHB2->chr12:7074490-7079988:-,prohibitin_2	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--MYC	2	0	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	3	14	0	24	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HAGH--PCNT	1	3	HAGH	11288	chr16:1859755:-	PCNT	67532	chr21:47865197:+	ONLY_REF_SPLICE	YES	25	42	0.14	0.09	0.0102	0.0306	HAGH->chr16:1845621-1877195:-,hydroxyacylglutathione_hydrolase,PCNT->chr21:47744036-47865682:+,pericentrin	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.14	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCNT2--SCAPER	1	1	CCNT2	6381	chr2:135700244:+	SCAPER	39745	chr15:77046289:-	ONLY_REF_SPLICE	YES	27	6	0.07	0.25	0.0102	0.0102	CCNT2->chr2:135675805-135716912:+,cyclin_T2,SCAPER->S-phase_cyclin_A-associated_protein_in_the_ER,chr15:76640526-77197785:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.25	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPA2B1--PHF14	1	1	HNRNPA2B1	1958	chr7:26240192:-	PHF14	39102	chr7:11150977:+	ONLY_REF_SPLICE	YES	2779	50	0	0.04	0.0102	0.0102	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0204	FALSE	1	4	0	1	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	1	1	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	17	1	0.11	0.0102	0.0102	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0204	FALSE	1	11	0	34	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--SYTL2	1	1	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	122	1	0.02	0.67	0.0102	0.0102	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.67	0.0204	TRUE	4	2	0	20	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--LINC00977	1	1	PVT1	1202	chr8:128806980:+	LINC00977	29526	chr8:130235615:-	ONLY_REF_SPLICE	YES	110	0	0.02	1	0.0102	0.0102	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	1	0.5	0.67	0.0102	0.0102	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.67	0.0204	FALSE	16	356	14	466	0	FALSE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TATDN1--DEPTOR	1	1	TATDN1	8556	chr8:125527987:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	37	4	0.05	0.33	0.0102	0.0102	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.33	0.0204	TRUE	0	0	0	6	0	TRUE	ACH-000294
NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	1	1	TIMM23	5841	chr10:51610393:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	340	6	0.01	0.25	0.0102	0.0102	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.25	0.0204	FALSE	1	12	0	11	0	FALSE	ACH-000294
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--AC096579.7	3	10590	IGKV3-20	1590	chr2:89442054:-	AC096579.7	6275	chr2:89161431:-	INCL_NON_REF_SPLICE	YES	0	1434	1	0.88	0.0331	116.7704	GTEx_FI:{Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Blood=[count:2=pct:1.1],Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4],Thyroid=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6]},IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,AC096579.7->chr2:89130700-89165653:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	116.8035	TRUE	14	336	13	1	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--AC096579.7	3	10590	IGKV3-20	1585	chr2:89442059:-	AC096579.7	6267	chr2:89161439:-	INCL_NON_REF_SPLICE	YES	0	1408	1	0.88	0.0331	116.7704	GTEx_FI:{Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Blood=[count:2=pct:1.1],Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4],Thyroid=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6]},IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,AC096579.7->chr2:89130700-89165653:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	116.8035	TRUE	14	336	13	1	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--AC096579.7	8	4662	IGKV3-20	1520	chr2:89442124:-	AC096579.7	7321	chr2:89157184:-	INCL_NON_REF_SPLICE	YES	5	1535	1	0.75	0.0882	51.4054	GTEx_FI:{Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Blood=[count:2=pct:1.1],Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4],Thyroid=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6]},IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,AC096579.7->chr2:89130700-89165653:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	51.4936	TRUE	9	277	13	4	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32A--PTMA	144	1	ANP32A	11758	chr15:69075327:-	PTMA	23482	chr2:232576070:+	INCL_NON_REF_SPLICE	YES	623	6105	0.19	0.02	1.5878	0.011	ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.19	1.5988	TRUE	0	0	0	2	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CS--TPH2	111	63	CS	1233	chr12:56693944:-	TPH2	37003	chr12:72469260:+	ONLY_REF_SPLICE	YES	269	0	0.39	1	1.2239	0.6947	CS->chr12:56665483-56694176:-,citrate_synthase,TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	1.9186	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	98	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0806	0.2867	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.3673	TRUE	508	994	45	981	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	98	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0806	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0806	TRUE	0	0	0	518	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	91	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0034	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0034	FALSE	369	2501	205	193	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	73	13	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8049	0.1433	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9482	FALSE	462	80	0	856	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	57	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	266	2	0.19	0.97	0.6285	0.0441	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.97	0.6726	TRUE	519	3926	326	965	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	51	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5624	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5624	TRUE	0	0	0	434	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	21	77	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2316	0.849	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0806	FALSE	369	2501	205	193	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRPK2--RP11-788H18.1	29	16	SRPK2	2897	chr7:105029095:-	RP11-788H18.1	30921	chr12:84665127:+	INCL_NON_REF_SPLICE	YES	31	0	0.59	1	0.3198	0.1764	SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,RP11-788H18.1->chr12:84665119-84688341:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.4962	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OR51S1--TP53I11	30	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3308	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3308	TRUE	402	216	10	229	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	25	17	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	4	0	0.91	1	0.2757	0.1875	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.4632	FALSE	20	187	4	79	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--AC096579.13	25	8	IGKV3-20	1587	chr2:89442057:-	AC096579.13	4590	chr2:89161073:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2757	0.0882	GTEx_FI:{Lung=[count:2=pct:1.2],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Ovary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2]},IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,AC096579.13->chr2:89109984-89161075:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3639	TRUE	11	319	19	3	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	26	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2867	0.0441	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3308	FALSE	499	1288	110	792	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	10	62	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1103	0.6836	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7939	FALSE	369	2501	205	193	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1DP3--FRY	21	11	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.2316	0.1213	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.3529	FALSE	20	24	2	21	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CS--TPH2	6	67	CS	2648	chr12:56692393:-	TPH2	37003	chr12:72469260:+	ONLY_REF_SPLICE	YES	300	0	0.2	1	0.0662	0.7388	CS->chr12:56665483-56694176:-,citrate_synthase,TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.805	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CS--TPH2	6	65	CS	1565	chr12:56693612:-	TPH2	37003	chr12:72469260:+	ONLY_REF_SPLICE	YES	300	0	0.19	1	0.0662	0.7167	CS->chr12:56665483-56694176:-,citrate_synthase,TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.7829	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	22	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2426	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2426	FALSE	369	2501	205	193	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	17	20	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1875	0.2205	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.408	FALSE	369	2501	205	193	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CS--TPH2	5	67	CS	3811	chr12:56685415:-	TPH2	37003	chr12:72469260:+	ONLY_REF_SPLICE	YES	300	0	0.19	1	0.0551	0.7388	CS->chr12:56665483-56694176:-,citrate_synthase,TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.7939	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	11	43	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1213	0.4741	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5954	FALSE	369	2501	205	193	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	18	14	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.1985	0.1544	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.3529	FALSE	515	4851	409	746	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	19	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	4	0	0.85	1	0.2095	0.0441	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.2536	FALSE	33	240	4	98	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL589743.1--RP11-536C10.17	18	3	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	15	0	0.58	1	0.1985	0.0331	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	1	0.2316	TRUE	0	33	0	45	33	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	18	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	10	0	0.66	1	0.1985	0.011	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	1	0.2095	TRUE	0	42	0	133	42	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CS--TPH2	1	67	CS	4222	chr12:56685004:-	TPH2	37003	chr12:72469260:+	ONLY_REF_SPLICE	NO	302	0	0.18	1	0.011	0.7388	CS->chr12:56665483-56694176:-,citrate_synthase,TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.7498	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--MVD	16	5	CBFA2T3	1548	chr16:89043065:-	MVD	26092	chr16:88725128:-	ONLY_REF_SPLICE	YES	32	104	0.4	0.17	0.1764	0.0551	CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,MVD->chr16:88718343-88729569:-,mevalonate_diphosphate_decarboxylase	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.4	0.2315	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	14	13	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1544	0.1433	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2977	FALSE	462	80	0	856	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CS--TPH2	13	12	CS	1233	chr12:56693944:-	TPH2	38232	chr12:72499428:+	ONLY_REF_SPLICE	YES	269	20	0.09	0.56	0.1433	0.1323	CS->chr12:56665483-56694176:-,citrate_synthase,TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.56	0.2756	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CS--TRHDE	13	12	CS	1233	chr12:56693944:-	TRHDE	18917	chr12:72499428:+	ONLY_REF_SPLICE	YES	269	0	0.09	1	0.1433	0.1323	CS->chr12:56665483-56694176:-,citrate_synthase,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.2756	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	15	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1654	0.0441	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2095	FALSE	499	1288	110	792	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-548K16.2--SMAD1	14	4	CTC-548K16.2	4562	chr19:14458127:-	SMAD1	17518	chr4:146435590:+	ONLY_REF_SPLICE	YES	0	24	1	0.43	0.1544	0.0441	CTC-548K16.2->chr19:14416270-14481008:-,SMAD1->SMAD_family_member_1,chr4:146402346-146479231:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.1985	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	8	28	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0882	0.3087	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3969	FALSE	369	2501	205	193	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	14	3	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	5567	0	0	1	0.1544	0.0331	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1875	TRUE	0	0	0	100	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	41	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0.4521	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4962	FALSE	369	2501	205	193	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD97--CTC-548K16.2	11	11	CD97	3414	chr19:14499630:+	CTC-548K16.2	19000	chr19:14480911:-	INCL_NON_REF_SPLICE	YES	35	0	0.39	1	0.1213	0.1213	LOCAL_INVERSION:+:-:[10305],CD97->Oncogene{Bushman},chr19:14491313-14519537:+,CTC-548K16.2->chr19:14416270-14481008:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.2426	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--AC096579.7	5	33	IGKV3-20	1101	chr2:89442543:-	AC096579.7	7309	chr2:89157196:-	ONLY_REF_SPLICE	YES	122	1804	0.24	0.02	0.0551	0.3639	GTEx_FI:{Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Blood=[count:2=pct:1.1],Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4],Thyroid=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6]},IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,AC096579.7->chr2:89130700-89165653:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.24	0.419	TRUE	9	277	13	4	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	20	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0882	0.2205	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.3087	FALSE	499	1288	110	792	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	12	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.64	0.1323	0.0441	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.1764	TRUE	458	1351	185	561	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	12	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	51	1	0.24	0.1323	0.0441	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.1764	TRUE	465	1949	224	605	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD97--CTC-548K16.2	11	7	CD97	3096	chr19:14499312:+	CTC-548K16.2	19000	chr19:14480911:-	INCL_NON_REF_SPLICE	YES	53	0	0.25	1	0.1213	0.0772	LOCAL_INVERSION:+:-:[10305],CD97->Oncogene{Bushman},chr19:14491313-14519537:+,CTC-548K16.2->chr19:14416270-14481008:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.1985	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--AC096579.13	10	8	IGKV3-20	1589	chr2:89442055:-	AC096579.13	4592	chr2:89161071:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1103	0.0882	GTEx_FI:{Lung=[count:2=pct:1.2],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Ovary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2]},IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,AC096579.13->chr2:89109984-89161075:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1985	TRUE	11	319	19	3	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCND1--RPS28	11	0	CCND1	1195	chr11:69456049:+	RPS28	12567	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1213	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1213	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD97--CTC-548K16.2	10	4	CD97	2045	chr19:14492357:+	CTC-548K16.2	19000	chr19:14480911:-	INCL_NON_REF_SPLICE	YES	41	0	0.25	1	0.1103	0.0441	LOCAL_INVERSION:+:-:[10305],CD97->Oncogene{Bushman},chr19:14491313-14519537:+,CTC-548K16.2->chr19:14416270-14481008:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.1544	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	27	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0441	0.2977	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.3418	FALSE	499	1288	110	792	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	7	15	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.0772	0.1654	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.2426	FALSE	407	2205	196	549	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32A--PTMA	10	1	ANP32A	11776	chr15:69075309:-	PTMA	24058	chr2:232576646:+	INCL_NON_REF_SPLICE	YES	590	5649	0.02	0	0.1103	0.011	ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.1213	TRUE	0	0	0	2	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	10	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1103	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1103	FALSE	369	2501	205	193	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DEPDC1B--PDE4D	8	7	DEPDC1B	9902	chr5:59934577:-	PDE4D	32158	chr5:59284544:-	ONLY_REF_SPLICE	YES	51	1	0.23	0.94	0.0882	0.0772	{Klijn_CCL:Ovary=1},NEIGHBORS[74792],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.94	0.1654	FALSE	0	0	0	2	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0.1544	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2206	FALSE	499	1288	110	792	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STK25--INPP5D	8	3	STK25	2725	chr2:242447421:-	INPP5D	41963	chr2:234098496:+	ONLY_REF_SPLICE	YES	211	183	0.05	0.06	0.0882	0.0331	STK25->chr2:242432089-242449145:-,serine/threonine_kinase_25,INPP5D->chr2:233924677-234116549:+,inositol_polyphosphate-5-phosphatase_D	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.06	0.1213	TRUE	0	0	0	1	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0772	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0772	FALSE	499	1288	110	792	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	6	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	66	15	0.12	0.38	0.0662	0.0331	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.38	0.0993	TRUE	267	562	48	632	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	15	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0.1654	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1985	FALSE	462	80	0	856	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	5	6	EEF2	8854	chr19:3977458:-	RPS28	13630	chr19:8386413:+	INCL_NON_REF_SPLICE	YES	5203	0	0	1	0.0551	0.0662	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1213	TRUE	0	0	0	100	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32A--PTMA	6	1	ANP32A	11767	chr15:69075318:-	PTMA	24022	chr2:232576610:+	INCL_NON_REF_SPLICE	NO	578	5869	0.01	0	0.0662	0.011	ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0772	FALSE	0	0	0	2	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	2	17	CTD-2008L17.1	3828	chr18:53685010:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0.1875	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2096	FALSE	1	24	0	14	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0.011	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0772	FALSE	462	80	0	856	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD11--PTK7	6	0	ANKRD11	4629	chr16:89484692:-	PTK7	47630	chr6:43109406:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0662	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,PTK7->Oncogene{Bushman},chr6:43044006-43129457:+,protein_tyrosine_kinase_7_(inactive)	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HLA-DRB1--PTMA	6	0	HLA-DRB1	1176	chr6:32557450:-	PTMA	11036	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0	HLA-DRB1->chr6:32546546-32557625:-,major_histocompatibility_complex,_class_II,_DR_beta_1,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0662	FALSE	0	0	0	3	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	16	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.86	1	0.0221	0.1764	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.1985	FALSE	467	2173	244	435	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	15	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0221	0.1654	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.1875	FALSE	275	511	55	178	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	4	6	EEF2	8863	chr19:3977449:-	RPS28	13639	chr19:8386422:+	INCL_NON_REF_SPLICE	YES	5044	0	0	1	0.0441	0.0662	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1103	TRUE	0	0	0	100	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP35--RP11-673F18.1	4	6	USP35	1346	chr11:77900203:+	RP11-673F18.1	18526	chr11:78467290:+	ONLY_REF_SPLICE	YES	8	0	0.56	1	0.0441	0.0662	USP35->chr11:77899858-77925757:+,ubiquitin_specific_peptidase_35,RP11-673F18.1->chr11:78460295-78467525:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.1103	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCND1--RPS28	4	5	CCND1	1249	chr11:69456103:+	RPS28	12618	chr19:8386435:+	INCL_NON_REF_SPLICE	YES	6221	0	0	1	0.0441	0.0551	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0992	FALSE	0	0	0	1	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	5	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0551	FALSE	369	2501	205	193	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--B2M	5	0	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0551	TRUE	0	0	0	28	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12568	chr4:174253271:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0551	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0551	TRUE	0	0	0	518	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	70	15	0.12	0.4	0.0331	0.0772	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.4	0.1103	TRUE	267	562	48	632	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	7	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0.0772	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1103	FALSE	462	80	0	856	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C12orf42--RP11-328J6.1	4	2	C12orf42	25586	chr12:103657104:-	RP11-328J6.1	31435	chr12:103571976:-	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0441	0.0221	NEIGHBORS[58916],C12orf42->chr12:103631369-103889749:-,chromosome_12_open_reading_frame_42,RP11-328J6.1->chr12:103474728-103572453:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.0662	FALSE	0	0	0	1	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC25A--ASB18	4	2	CDC25A	1625	chr3:48229268:-	ASB18	27841	chr2:237146599:-	ONLY_REF_SPLICE	YES	81	0	0.07	1	0.0441	0.0221	CDC25A->Oncogene{Bushman},cell_division_cycle_25A,chr3:48198636-48229892:-,ASB18->ankyrin_repeat_and_SOCS_box_containing_18,chr2:237102095-237173052:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32A--PTMA	4	1	ANP32A	11758	chr15:69075327:-	PTMA	24031	chr2:232576619:+	INCL_NON_REF_SPLICE	NO	623	5920	0.01	0	0.0441	0.011	ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0551	FALSE	0	0	0	2	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32A--PTMA	4	1	ANP32A	14167	chr15:69072752:-	PTMA	23485	chr2:232576073:+	INCL_NON_REF_SPLICE	YES	356	6027	0.01	0	0.0441	0.011	ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0551	FALSE	0	0	0	2	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFA2T3--MVD	3	5	CBFA2T3	4558	chr16:89007428:-	MVD	26092	chr16:88725128:-	ONLY_REF_SPLICE	YES	47	104	0.15	0.07	0.0331	0.0551	CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-,MVD->chr16:88718343-88729569:-,mevalonate_diphosphate_decarboxylase	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.15	0.0882	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1030	chrM:14644:-	MT-TE	4573	chrM:14695:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0441	FALSE	499	1288	110	792	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0441	FALSE	369	2501	205	193	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0441	FALSE	369	2501	205	193	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	4	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0441	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0441	FALSE	272	151	14	158	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCND1--RPS28	3	3	CCND1	1232	chr11:69456086:+	RPS28	12602	chr19:8386419:+	INCL_NON_REF_SPLICE	YES	5709	0	0	1	0.0331	0.0331	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0662	FALSE	0	0	0	1	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF1DP3--FRY	3	2	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	9	1	0.36	0.83	0.0331	0.0221	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.83	0.0552	FALSE	18	26	2	21	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--AGAP6	2	6	TIMM23B	6950	chr10:51387763:+	AGAP6	10946	chr10:51749068:+	ONLY_REF_SPLICE	YES	0	27	1	0.23	0.0221	0.0662	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,AGAP6->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_6,chr10:51748078-51770259:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.0883	TRUE	2	1	1	8	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32A--PTMA	3	1	ANP32A	14167	chr15:69072752:-	PTMA	24070	chr2:232576658:+	INCL_NON_REF_SPLICE	YES	356	5347	0.01	0	0.0331	0.011	ANP32A->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_A,chr15:69070874-69113236:-,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0441	FALSE	0	0	0	2	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--THOP1	2	5	OAZ1	1259	chr19:2269743:+	THOP1	23367	chr19:2813113:+	ONLY_REF_SPLICE	YES	2867	407	0	0.02	0.0221	0.0551	OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,THOP1->chr19:2785458-2813599:+,thimet_oligopeptidase_1	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0772	FALSE	0	0	0	1	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0331	0.011	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.0441	FALSE	16	356	14	466	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	3	1	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	3	13	0.57	0.24	0.0331	0.011	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.57	0.0441	TRUE	37	101	7	40	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARPC2--SH3PXD2A	3	0	ARPC2	4648	chr2:219093519:+	SH3PXD2A	30995	chr10:105420872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	ARPC2->actin_related_protein_2/3_complex_subunit_2,chr2:219081817-219119079:+,SH3PXD2A->SH3_and_PX_domains_2A,chr10:105348285-105615301:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC4--RPLP1	3	0	DNAJC4	1551	chr11:63998300:+	RPLP1	8046	chr15:69745159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	DNAJC4->DnaJ_heat_shock_protein_family_(Hsp40)_member_C4,chr11:63997750-64001758:+,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELN--TYSND1	3	0	ELN	3702	chr7:73450914:+	TYSND1	30546	chr10:71905801:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	ELN->Oncogene{Bushman},chr7:73442119-73484237:+,elastin,TYSND1->chr10:71897737-71906432:-,trypsin_domain_containing_1	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0331	TRUE	0	0	0	2	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--DAZAP1	3	0	IGLL5	1480	chr22:23230439:+	DAZAP1	11586	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0331	0	{Klijn_CCL:Lymphoid=1},IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1031	chrM:14643:-	MT-TE	4590	chrM:14678:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0331	FALSE	499	1288	110	792	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0331	FALSE	499	1288	110	792	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ITGB3BP	3	0	RCC1	2175	chr1:28834672:+	ITGB3BP	30203	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0331	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0331	TRUE	0	6	0	9	2	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0331	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0331	FALSE	0	48	1	163	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-80H8.4--SLC9A9-AS2	3	0	RP11-80H8.4	1215	chr3:142842418:+	SLC9A9-AS2	6445	chr3:143100789:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-80H8.4->chr3:142842204-142850735:+,SLC9A9-AS2->SLC9A9_antisense_RNA_2,chr3:143100180-143101003:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0331	TRUE	3	14	0	3	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BICD1--DENND5B	2	3	BICD1	5338	chr12:32447080:+	DENND5B	29221	chr12:31652605:-	ONLY_REF_SPLICE	YES	12	14	0.29	0.26	0.0221	0.0331	BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,DENND5B->DENN_domain_containing_5B,chr12:31535157-31744031:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.29	0.0552	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AUTS2--IFNLR1	2	1	AUTS2	5415	chr7:69364484:+	IFNLR1	41851	chr1:24488174:-	ONLY_REF_SPLICE	YES	46	45	0.06	0.06	0.0221	0.011	AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+,IFNLR1->chr1:24480647-24514449:-,interferon_lambda_receptor_1	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.06	0.0331	TRUE	0	0	0	1	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGDIA--ACTG1	2	0	ARHGDIA	1109	chr17:79829174:-	ACTG1	10501	chr17:79479386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARL6--SQLE	2	0	ARL6	6927	chr3:97503893:+	SQLE	24694	chr8:126023779:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	ARL6->ADP_ribosylation_factor_like_GTPase_6,chr3:97483365-97519953:+,SQLE->chr8:126010739-126034525:+,squalene_epoxidase	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--OCIAD1	2	0	DANCR	1530	chr4:53579126:+	OCIAD1	20878	chr4:48862742:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,OCIAD1->OCIA_domain_containing_1,chr4:48807229-48863834:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IP6K1--RHOA	2	0	IP6K1	1189	chr3:49823787:-	RHOA	17945	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	IP6K1->chr3:49761727-49823975:-,inositol_hexakisphosphate_kinase_1,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	1	0	1	1	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NR6A1--XKR6	2	0	NR6A1	2333	chr9:127495587:-	XKR6	24702	chr8:10971602:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	NR6A1->chr9:127279554-127533589:-,nuclear_receptor_subfamily_6_group_A_member_1,XKR6->XK_related_6,chr8:10753555-11058875:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ORC6--RP11-296I10.6	2	0	ORC6	4279	chr16:46727094:+	RP11-296I10.6	25755	chr16:70256383:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	ORC6->chr16:46723555-46732306:+,origin_recognition_complex_subunit_6,RP11-296I10.6->chr16:70253477-70279519:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAFAH1B2--NADSYN1	2	0	PAFAH1B2	1152	chr11:117015134:+	NADSYN1	40848	chr11:71201891:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRS--DNMT1	2	0	PTPRS	16790	chr19:5238930:-	DNMT1	73605	chr19:10251004:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	PTPRS->chr19:5158506-5340814:-,protein_tyrosine_phosphatase,_receptor_type_S,DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-16E12.2--FAM120A	2	0	RP11-16E12.2	2271	chr15:31521475:-	FAM120A	25797	chr9:96320109:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	RP11-16E12.2->chr15:31514202-31523041:-,FAM120A->chr9:96214004-96328397:+,family_with_sequence_similarity_120A	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-80H8.4--SLC9A9-AS2	2	0	RP11-80H8.4	1215	chr3:142842418:+	SLC9A9-AS2	6442	chr3:143100786:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-80H8.4->chr3:142842204-142850735:+,SLC9A9-AS2->SLC9A9_antisense_RNA_2,chr3:143100180-143101003:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	3	14	0	3	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--UBE2D2	2	0	RPS3	1092	chr11:75110621:+	UBE2D2	16407	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--FUS	2	0	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	5	20	0	32	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF3B3--H2AFV	2	0	SF3B3	28255	chr16:70604052:+	H2AFV	40427	chr7:44874161:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	SF3B3->chr16:70557691-70608820:+,splicing_factor_3b_subunit_3,H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC39A7--IGH@	2	0	SLC39A7	1494	chr6:33168715:+	IGH@	114116	chr14:106236323:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	SLC39A7->chr6:33168222-33172216:+,solute_carrier_family_39_member_7,IGH@->Oncogene{Bushman}	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SOCS5--TTC7A	2	0	SOCS5	1498	chr2:46926588:+	TTC7A	13783	chr2:47177502:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	GTEx_FI:{Nerve=[count:2=pct:1.2],Brain=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},SOCS5->chr2:46926091-46990268:+,suppressor_of_cytokine_signaling_5,TTC7A->chr2:47143296-47303276:+,tetratricopeptide_repeat_domain_7A	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	5	3	1	3	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB2--ARHGAP15	2	0	ZEB2	5479	chr2:145274845:-	ARHGAP15	66126	chr2:144460988:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.08%,GTEx_FI:{Blood=[count:17=pct:9.8],Whole_Blood=[count:16=pct:12.1],Nerve=[count:6=pct:3.5],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=23,Nerve_-_Tibial=9,Spleen=4,Lung=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	15	6	0	3	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD11--ACSF3	1	1	ANKRD11	14218	chr16:89371614:-	ACSF3	41646	chr16:89164999:+	ONLY_REF_SPLICE	YES	367	105	0.01	0.02	0.011	0.011	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,ACSF3->acyl-CoA_synthetase_family_member_3,chr16:89154783-89222254:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD11--PTK7	1	1	ANKRD11	4629	chr16:89484692:-	PTK7	45953	chr6:43106587:+	ONLY_REF_SPLICE	YES	61	41	0.03	0.05	0.011	0.011	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,PTK7->Oncogene{Bushman},chr6:43044006-43129457:+,protein_tyrosine_kinase_7_(inactive)	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.05	0.022	TRUE	0	0	0	1	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATXN1--DTNBP1	1	1	ATXN1	16199	chr6:16486203:-	DTNBP1	39801	chr6:15615630:-	ONLY_REF_SPLICE	YES	15	140	0.12	0.01	0.011	0.011	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},ATXN1->ataxin_1,chr6:16299343-16761722:-,DTNBP1->chr6:15523032-15663289:-,dystrobrevin_binding_protein_1	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.12	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CARKD--ARHGEF7	1	1	CARKD	3438	chr13:111276626:+	ARHGEF7	23364	chr13:111857636:+	ONLY_REF_SPLICE	NO	65	111	0.03	0.02	0.011	0.011	GTEx&tcga_normals:1/3694=0.03%,CARKD->chr13:111267881-111292340:+,ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.022	TRUE	0	0	0	1	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EPB41--SFPQ	1	1	EPB41	3407	chr1:29241280:+	SFPQ	47713	chr1:35643637:-	ONLY_REF_SPLICE	YES	141	82	0.01	0.02	0.011	0.011	EPB41->chr1:29213603-29446553:+,erythrocyte_membrane_protein_band_4.1,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MSI2--RP11-60A24.3	1	1	MSI2	23267	chr17:55607085:+	RP11-60A24.3	51642	chr17:55849557:-	ONLY_REF_SPLICE	NO	231	0	0.01	1	0.011	0.011	LOCAL_INVERSION:+:-:[87261],MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,RP11-60A24.3->chr17:55849307-55912110:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PUM1--SHARPIN	1	1	PUM1	4000	chr1:31532051:-	SHARPIN	36735	chr8:145158128:-	ONLY_REF_SPLICE	YES	89	76	0.02	0.03	0.011	0.011	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,SHARPIN->SHANK_associated_RH_domain_interactor,chr8:145153536-145163027:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.022	TRUE	0	0	0	1	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB40C--TMEM8A	1	1	RAB40C	2077	chr16:640433:+	TMEM8A	17482	chr16:427848:-	ONLY_REF_SPLICE	YES	28	13	0.07	0.13	0.011	0.011	GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5]},GTEx_v2:{count=3;pct=0.03%;dist=Pancreas=1,Lung=1,Brain_-_Cerebellum=1},RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+,TMEM8A->chr16:420773-437113:-,transmembrane_protein_8A	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.13	0.022	TRUE	6	8	0	5	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RANBP1--MFSD12	1	1	RANBP1	1493	chr22:20103953:+	MFSD12	19324	chr19:3551192:-	ONLY_REF_SPLICE	YES	80	90	0.02	0.02	0.011	0.011	RANBP1->RAN_binding_protein_1,chr22:20103461-20114878:+,MFSD12->chr19:3538259-3574288:-,major_facilitator_superfamily_domain_containing_12	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.022	TRUE	0	0	0	1	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1379J22.5--UBE2D2	1	1	RP11-1379J22.5	1720	chr5:179085482:+	UBE2D2	10384	chr5:138979957:+	ONLY_REF_SPLICE	NO	0	137	1	0.01	0.011	0.011	RP11-1379J22.5->chr5:179084763-179091433:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.022	FALSE	0	5	0	5	2	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SHOC2--PDCD4	1	1	SHOC2	4726	chr10:112724819:+	PDCD4	21020	chr10:112640991:+	ONLY_REF_SPLICE	YES	103	861	0.02	0	0.011	0.011	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=2},LOCAL_REARRANGEMENT:+:[19537],SHOC2->SHOC2_leucine-rich_repeat_scaffold_protein,chr10:112679301-112773425:+,PDCD4->Oncogene{Bushman},chr10:112631565-112659764:+,programmed_cell_death_4_(neoplastic_transformation_inhibitor)	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.022	FALSE	0	3	0	1	0	FALSE	ACH-000357
JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR33--IWS1	1	1	WDR33	7687	chr2:128520636:-	IWS1	52549	chr2:128227961:-	ONLY_REF_SPLICE	YES	60	1	0.03	0.67	0.011	0.011	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,IWS1->IWS1,_SUPT6H_interacting_protein,chr2:128193783-128284462:-	JEKO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.67	0.022	TRUE	0	0	0	1	0	FALSE	ACH-000357
HT115_LARGE_INTESTINE	CTC-228N24.2--CTC-228N24.3	7741	7971	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	669	488	0.96	0.97	44.4897	45.8116	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HT115_LARGE_INTESTINE	0.96	0.97	90.3013	TRUE	0	1	0	12	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CTC-228N24.2--CTC-228N24.3	31	7972	CTC-228N24.2	1195	chr5:127193302:-	CTC-228N24.3	17759	chr5:127302620:-	INCL_NON_REF_SPLICE	YES	703	488	0.92	0.94	0.1782	45.8173	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HT115_LARGE_INTESTINE	0.92	0.94	45.9955	TRUE	0	1	0	12	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CTC-228N24.2--CTC-228N24.3	4	7976	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	9867	chr5:127396936:-	ONLY_REF_SPLICE	YES	669	518	0.92	0.94	0.023	45.8403	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HT115_LARGE_INTESTINE	0.92	0.94	45.8633	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CTC-228N24.2--CTC-228N24.3	5	7490	CTC-228N24.2	1186	chr5:127193311:-	CTC-228N24.3	17759	chr5:127302620:-	INCL_NON_REF_SPLICE	YES	667	488	0.92	0.94	0.0287	43.0472	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HT115_LARGE_INTESTINE	0.92	0.94	43.0759	TRUE	0	1	0	12	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CCZ1--OCM	469	418	CCZ1	5832	chr7:5944900:+	OCM	22215	chr7:5923521:+	ONLY_REF_SPLICE	YES	596	1	0.6	1	2.6955	2.4024	LOCAL_REARRANGEMENT:+:[12363],CCZ1->CCZ1_homolog,_vacuolar_protein_trafficking_and_biogenesis_associated,chr7:5938356-5965605:+,OCM->chr7:5919458-5925993:+,oncomodulin	HT115_LARGE_INTESTINE	0.6	1	5.0979	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CCZ1B--OCM2	432	345	CCZ1B	6326	chr7:6859397:-	OCM2	25805	chr7:97616468:-	ONLY_REF_SPLICE	YES	768	0	0.5	1	2.4828	1.9828	CCZ1B->CCZ1_homolog_B,_vacuolar_protein_trafficking_and_biogenesis_associated,chr7:6833765-6866401:-,OCM2->chr7:97613996-97620481:-,oncomodulin_2	HT115_LARGE_INTESTINE	0.5	1	4.4656	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	PACSIN2--TTLL1	276	115	PACSIN2	1125	chr22:43411027:-	TTLL1	37017	chr22:43442579:-	ONLY_REF_SPLICE	YES	263	15	0.6	0.96	1.5863	0.6609	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[24371],PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,TTLL1->chr22:43435522-43485434:-,tubulin_tyrosine_ligase_like_1	HT115_LARGE_INTESTINE	0.6	0.96	2.2472	TRUE	0	1	0	1	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	FLOT1--LINC00243	200	105	FLOT1	3576	chr6:30707935:-	LINC00243	14145	chr6:30766549:-	ONLY_REF_SPLICE	YES	1475	0	0.17	1	1.1495	0.6035	LOCAL_REARRANGEMENT:-:[55921],FLOT1->chr6:30695486-30710510:-,flotillin_1,LINC00243->chr6:30766431-30798436:-,long_intergenic_non-protein_coding_RNA_243	HT115_LARGE_INTESTINE	0.17	1	1.753	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CTC-228N24.2--CTC-228N24.3	153	286	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	19800	chr5:127292613:-	ONLY_REF_SPLICE	YES	669	322	0.4	0.58	0.8793	1.6437	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HT115_LARGE_INTESTINE	0.4	0.58	2.523	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CTC-228N24.2--CTC-228N24.3	130	194	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	20918	chr5:127276912:-	ONLY_REF_SPLICE	YES	669	576	0.33	0.36	0.7471	1.115	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HT115_LARGE_INTESTINE	0.33	0.36	1.8621	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CTC-228N24.2--CTC-228N24.3	6	559	CTC-228N24.2	1066	chr5:127193431:-	CTC-228N24.3	17987	chr5:127302392:-	INCL_NON_REF_SPLICE	YES	1649	2613	0.26	0.18	0.0345	3.2127	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	HT115_LARGE_INTESTINE	0.18	0.26	3.2472	TRUE	0	1	0	12	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	TIMM23B--LINC00843	122	59	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7012	0.3391	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HT115_LARGE_INTESTINE	1	1	1.0403	TRUE	508	994	45	981	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	MT-TA--MT-TC	126	16	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7242	0.092	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HT115_LARGE_INTESTINE	1	1	0.8162	FALSE	462	80	0	856	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	CCAT1--CASC8	68	80	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	11	5	0.93	0.97	0.3908	0.4598	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HT115_LARGE_INTESTINE	0.93	0.97	0.8506	TRUE	0	26	0	18	24	TRUE	ACH-000986
HT115_LARGE_INTESTINE	TIMM23--RP11-464F9.1	72	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	792	8	0.09	0.91	0.4138	0.046	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HT115_LARGE_INTESTINE	0.09	0.91	0.4598	TRUE	519	3926	326	965	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RP11-255B23.4--CASC8	64	39	RP11-255B23.4	2391	chr8:128200030:-	CASC8	14642	chr8:128302305:-	ONLY_REF_SPLICE	YES	17	5	0.86	0.95	0.3678	0.2241	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HT115_LARGE_INTESTINE	0.86	0.95	0.5919	TRUE	0	3	0	2	3	TRUE	ACH-000986
HT115_LARGE_INTESTINE	MARS--INHBC	54	33	MARS	6756	chr12:57884427:+	INHBC	21616	chr12:57843060:+	ONLY_REF_SPLICE	YES	1160	0	0.07	1	0.3104	0.1897	LOCAL_REARRANGEMENT:+:[24617],MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase,INHBC->chr12:57828543-57844611:+,inhibin_beta_C	HT115_LARGE_INTESTINE	0.07	1	0.5001	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	KANSL1--ARL17B	36	29	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	58	102	0.53	0.39	0.2069	0.1667	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HT115_LARGE_INTESTINE	0.39	0.53	0.3736	TRUE	181	1564	124	196	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RP11-680G10.1--GSE1	32	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	49	1	0.42	0.1839	0.0172	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HT115_LARGE_INTESTINE	0.42	1	0.2011	TRUE	465	1949	224	605	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	SLC12A2--CTC-228N24.1	23	36	SLC12A2	7895	chr5:127471500:+	CTC-228N24.1	45072	chr5:127211230:+	ONLY_REF_SPLICE	YES	1511	8	0.04	0.88	0.1322	0.2069	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,CTC-228N24.1->chr5:127039082-127277326:+	HT115_LARGE_INTESTINE	0.04	0.88	0.3391	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	ZNF654--HMGB2	30	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1724	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HT115_LARGE_INTESTINE	1	1	0.1724	TRUE	0	0	0	518	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	C15orf57--CBX3	24	19	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	179	51	0.19	0.46	0.1379	0.1092	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HT115_LARGE_INTESTINE	0.19	0.46	0.2471	TRUE	267	562	48	632	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	CREBL2--KIAA1467	25	14	CREBL2	4807	chr12:12790648:+	KIAA1467	21041	chr12:13224175:+	ONLY_REF_SPLICE	YES	247	28	0.14	0.58	0.1437	0.0805	{Klijn_CCL:Colo-Rectal=1},CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+,KIAA1467->chr12:13197218-13295455:+	HT115_LARGE_INTESTINE	0.14	0.58	0.2242	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CCAT1--CASC8	7	85	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	11	4	0.89	0.96	0.0402	0.4885	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HT115_LARGE_INTESTINE	0.89	0.96	0.5287	TRUE	0	7	0	14	6	TRUE	ACH-000986
HT115_LARGE_INTESTINE	PLXDC1--TAF13	28	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1609	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HT115_LARGE_INTESTINE	1	1	0.1609	TRUE	7	10	0	216	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	OR51S1--TP53I11	27	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1552	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HT115_LARGE_INTESTINE	1	1	0.1552	TRUE	402	216	10	229	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	GPRC5A--RPL13AP20	25	4	GPRC5A	1883	chr12:13044598:+	RPL13AP20	14896	chr12:13028579:+	INCL_NON_REF_SPLICE	YES	87	76	0.25	0.28	0.1437	0.023	LOCAL_REARRANGEMENT:+:[14672],GPRC5A->G_protein-coupled_receptor_class_C_group_5_member_A,chr12:13043716-13070871:+,RPL13AP20->chr12:13028433-13029044:+,ribosomal_protein_L13a_pseudogene_20	HT115_LARGE_INTESTINE	0.25	0.28	0.1667	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	PACSIN2--TTLL1	3	83	PACSIN2	1125	chr22:43411027:-	TTLL1	37046	chr22:43442550:-	INCL_NON_REF_SPLICE	YES	263	13	0.25	0.87	0.0172	0.477	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[24371],PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,TTLL1->chr22:43435522-43485434:-,tubulin_tyrosine_ligase_like_1	HT115_LARGE_INTESTINE	0.25	0.87	0.4942	TRUE	0	1	0	1	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CCAT1--CASC8	1	85	CCAT1	1279	chr8:128231055:-	CASC8	12971	chr8:128433208:-	ONLY_REF_SPLICE	YES	11	9	0.89	0.91	0.0057	0.4885	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HT115_LARGE_INTESTINE	0.89	0.91	0.4942	TRUE	0	7	0	7	7	TRUE	ACH-000986
HT115_LARGE_INTESTINE	SLC12A2--CTC-228N24.1	15	24	SLC12A2	7895	chr5:127471500:+	CTC-228N24.1	47533	chr5:127276874:+	ONLY_REF_SPLICE	YES	1511	43	0.03	0.48	0.0862	0.1379	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,CTC-228N24.1->chr5:127039082-127277326:+	HT115_LARGE_INTESTINE	0.03	0.48	0.2241	TRUE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	MT-TA--MT-TC	15	18	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0.1035	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HT115_LARGE_INTESTINE	1	1	0.1897	FALSE	462	80	0	856	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RP11-479O16.1--MSMO1	19	0	RP11-479O16.1	5346	chr5:58037747:-	MSMO1	15454	chr4:166263475:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1092	0	RP11-479O16.1->chr5:58037408-58112926:-,MSMO1->chr4:166248775-166264312:+,methylsterol_monooxygenase_1	HT115_LARGE_INTESTINE	1	1	0.1092	TRUE	0	0	0	5	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	PACSIN2--TTLL1	11	31	PACSIN2	1125	chr22:43411027:-	TTLL1	38181	chr22:43435911:-	ONLY_REF_SPLICE	YES	263	23	0.14	0.65	0.0632	0.1782	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[24371],PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,TTLL1->chr22:43435522-43485434:-,tubulin_tyrosine_ligase_like_1	HT115_LARGE_INTESTINE	0.14	0.65	0.2414	TRUE	0	1	0	1	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	SAMD5--SASH1	18	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	66	6	0.22	0.76	0.1035	0.0057	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HT115_LARGE_INTESTINE	0.22	0.76	0.1092	TRUE	53	396	64	110	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	NIPA2--POLA1	18	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1035	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	HT115_LARGE_INTESTINE	1	1	0.1035	TRUE	46	1352	75	139	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	MT-ND6--MT-TE	17	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0977	0.0057	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT115_LARGE_INTESTINE	0.95	1	0.1034	FALSE	499	1288	110	792	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	13	17	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.97	0.97	0.0747	0.0977	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HT115_LARGE_INTESTINE	0.97	0.97	0.1724	FALSE	515	4851	409	746	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	HSPBP1--GRK5	16	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.092	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HT115_LARGE_INTESTINE	1	1	0.092	TRUE	1	39	0	134	39	FALSE	ACH-000986
HT115_LARGE_INTESTINE	MT-TA--MT-TC	10	21	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0575	0.1207	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HT115_LARGE_INTESTINE	1	1	0.1782	FALSE	462	80	0	856	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	WIPF2--CASC3	14	2	WIPF2	1189	chr17:38375744:+	CASC3	22180	chr17:38318006:+	ONLY_REF_SPLICE	YES	35	342	0.31	0.04	0.0805	0.0115	LOCAL_REARRANGEMENT:+:[47120],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	HT115_LARGE_INTESTINE	0.04	0.31	0.092	TRUE	0	1	0	1	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	YEATS4--LYZ	12	10	YEATS4	7243	chr12:69764755:+	LYZ	13098	chr12:69743888:+	ONLY_REF_SPLICE	YES	442	11205	0.05	0	0.069	0.0575	LOCAL_REARRANGEMENT:+:[5469],YEATS4->YEATS_domain_containing_4,chr12:69753483-69784576:+,LYZ->chr12:69742121-69748014:+,lysozyme	HT115_LARGE_INTESTINE	0	0.05	0.1265	TRUE	0	7	0	3	6	TRUE	ACH-000986
HT115_LARGE_INTESTINE	AC144450.1--PXDN	13	4	AC144450.1	2515	chr2:1620939:-	PXDN	37253	chr2:1639293:-	ONLY_REF_SPLICE	YES	1	20	0.94	0.46	0.0747	0.023	LOCAL_REARRANGEMENT:-:[11774],AC144450.1->chr2:1550437-1623885:-,PXDN->chr2:1635659-1748624:-,peroxidasin	HT115_LARGE_INTESTINE	0.46	0.94	0.0977	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HT115_LARGE_INTESTINE	1	1	0.0747	TRUE	0	0	0	434	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	MT-ND6--MT-TE	12	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.069	0.0115	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT115_LARGE_INTESTINE	0.93	1	0.0805	FALSE	499	1288	110	792	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	MT-TA--MT-TC	12	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0.0115	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HT115_LARGE_INTESTINE	1	1	0.0805	FALSE	462	80	0	856	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	NRIP1--AF127936.7	12	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.82	1	0.069	0.0115	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HT115_LARGE_INTESTINE	0.82	1	0.0805	FALSE	292	1546	117	613	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RP11-255B23.4--CASC8	5	30	RP11-255B23.4	2379	chr8:128200042:-	CASC8	14642	chr8:128302305:-	INCL_NON_REF_SPLICE	YES	17	5	0.67	0.88	0.0287	0.1724	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HT115_LARGE_INTESTINE	0.67	0.88	0.2011	TRUE	0	3	0	2	3	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CFD--AC006273.5	10	4	CFD	3504	chr19:861956:+	AC006273.5	8278	chr19:783166:+	INCL_NON_REF_SPLICE	YES	535	12	0.03	0.54	0.0575	0.023	LOCAL_REARRANGEMENT:+:[74373],CFD->chr19:859453-863453:+,complement_factor_D_(adipsin),AC006273.5->chr19:782755-785080:+	HT115_LARGE_INTESTINE	0.03	0.54	0.0805	TRUE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RP11-255B23.4--CASC8	1	39	RP11-255B23.4	2391	chr8:128200030:-	CASC8	13502	chr8:128335399:-	ONLY_REF_SPLICE	YES	17	4	0.7	0.91	0.0057	0.2241	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HT115_LARGE_INTESTINE	0.7	0.91	0.2298	TRUE	0	1	0	2	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	SLC12A2--CTC-228N24.1	1	39	SLC12A2	18267	chr5:127497492:+	CTC-228N24.1	45072	chr5:127211230:+	ONLY_REF_SPLICE	YES	2222	8	0.02	0.83	0.0057	0.2241	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,CTC-228N24.1->chr5:127039082-127277326:+	HT115_LARGE_INTESTINE	0.02	0.83	0.2298	TRUE	0	1	0	1	1	FALSE	ACH-000986
HT115_LARGE_INTESTINE	ADAP1--C7orf50	10	2	ADAP1	2012	chr7:994032:-	C7orf50	30890	chr7:1040187:-	ONLY_REF_SPLICE	YES	51	602	0.19	0.02	0.0575	0.0115	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_REARRANGEMENT:-:[41579],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	HT115_LARGE_INTESTINE	0.02	0.19	0.069	TRUE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	MT-TA--MT-TC	6	18	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0.1035	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HT115_LARGE_INTESTINE	1	1	0.138	FALSE	462	80	0	856	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	C15orf57--CBX3	7	13	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	176	52	0.1	0.28	0.0402	0.0747	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HT115_LARGE_INTESTINE	0.1	0.28	0.1149	TRUE	267	562	48	632	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	GPRC5A--RPL13AP20	9	5	GPRC5A	1883	chr12:13044598:+	RPL13AP20	14738	chr12:13028421:+	INCL_NON_REF_SPLICE	YES	87	0	0.14	1	0.0517	0.0287	LOCAL_REARRANGEMENT:+:[14672],GPRC5A->G_protein-coupled_receptor_class_C_group_5_member_A,chr12:13043716-13070871:+,RPL13AP20->chr12:13028433-13029044:+,ribosomal_protein_L13a_pseudogene_20	HT115_LARGE_INTESTINE	0.14	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	MT-ND6--MT-TE	10	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0575	0.0057	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT115_LARGE_INTESTINE	0.92	1	0.0632	FALSE	499	1288	110	792	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	NUDT1--HACE1	10	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0575	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	HT115_LARGE_INTESTINE	1	1	0.0575	TRUE	1	20	0	20	17	FALSE	ACH-000986
HT115_LARGE_INTESTINE	BPTF--LRRC37A2	9	0	BPTF	1814	chr17:65822453:+	LRRC37A2	51890	chr17:44594728:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	BPTF->bromodomain_PHD_finger_transcription_factor,chr17:65821640-65980494:+,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	HT115_LARGE_INTESTINE	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	YEATS4--LYZ	9	0	YEATS4	2358	chr12:69755133:+	LYZ	15848	chr12:69747351:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	LOCAL_REARRANGEMENT:+:[5469],YEATS4->YEATS_domain_containing_4,chr12:69753483-69784576:+,LYZ->chr12:69742121-69748014:+,lysozyme	HT115_LARGE_INTESTINE	1	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP11-255B23.4--CASC8	8	3	RP11-255B23.4	1060	chr8:128215408:-	CASC8	14642	chr8:128302305:-	ONLY_REF_SPLICE	YES	0	5	1	0.69	0.046	0.0172	LOCAL_REARRANGEMENT:-:[86595],RP11-255B23.4->chr8:128197880-128215467:-,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HT115_LARGE_INTESTINE	0.69	1	0.0632	TRUE	0	9	0	3	9	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP11-120D5.1--MID1	7	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	81	0.72	0.14	0.0402	0.0345	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HT115_LARGE_INTESTINE	0.14	0.72	0.0747	FALSE	16	356	14	466	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RP11-216L13.19--TMEM141	7	4	RP11-216L13.19	7958	chr9:139702778:+	TMEM141	13267	chr9:139686399:+	ONLY_REF_SPLICE	YES	4	2759	0.73	0	0.0402	0.023	LOCAL_REARRANGEMENT:+:[5966],RP11-216L13.19->chr9:139693675-139704494:+,TMEM141->chr9:139685807-139687709:+,transmembrane_protein_141	HT115_LARGE_INTESTINE	0	0.73	0.0632	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	C10orf112--PLXDC2	6	7	C10orf112	32754	chr10:20079115:+	PLXDC2	37923	chr10:20290704:+	INCL_NON_REF_SPLICE	YES	0	71	1	0.15	0.0345	0.0402	NEIGHBORS[25838],C10orf112->chr10:19492779-20079330:+,PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2	HT115_LARGE_INTESTINE	0.15	1	0.0747	FALSE	73	74	3	10	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	SLC12A2--CTC-228N24.1	1	25	SLC12A2	12591	chr5:127484569:+	CTC-228N24.1	47533	chr5:127276874:+	ONLY_REF_SPLICE	YES	2063	43	0.01	0.38	0.0057	0.1437	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,CTC-228N24.1->chr5:127039082-127277326:+	HT115_LARGE_INTESTINE	0.01	0.38	0.1494	TRUE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	SLC12A2--CTC-228N24.1	5	9	SLC12A2	1945	chr5:127420402:+	CTC-228N24.1	47533	chr5:127276874:+	ONLY_REF_SPLICE	YES	1812	43	0.01	0.25	0.0287	0.0517	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,CTC-228N24.1->chr5:127039082-127277326:+	HT115_LARGE_INTESTINE	0.01	0.25	0.0804	FALSE	0	1	0	1	1	FALSE	ACH-000986
HT115_LARGE_INTESTINE	HSPBP1--GRK5	7	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HT115_LARGE_INTESTINE	1	1	0.0402	TRUE	1	39	0	134	39	FALSE	ACH-000986
HT115_LARGE_INTESTINE	HSPBP1--GRK5	7	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HT115_LARGE_INTESTINE	1	1	0.0402	TRUE	1	39	0	134	39	FALSE	ACH-000986
HT115_LARGE_INTESTINE	NRIP1--AF127936.7	6	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.33	1	0.0345	0.023	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HT115_LARGE_INTESTINE	0.33	1	0.0575	FALSE	164	806	69	479	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	REV3L--RPL28	7	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	HT115_LARGE_INTESTINE	1	1	0.0402	TRUE	22	156	2	142	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	HSP90AB1--EIF4G2	6	1	HSP90AB1	7426	chr6:44221249:+	EIF4G2	16804	chr11:10824651:-	INCL_NON_REF_SPLICE	NO	8648	2096	0	0	0.0345	0.0057	GTEx&tcga_normals:1/3694=0.03%,HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2	HT115_LARGE_INTESTINE	0	0	0.0402	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	17	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.95	0.0115	0.0977	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HT115_LARGE_INTESTINE	0.95	1	0.1092	FALSE	467	2173	244	435	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	MT-ND6--MT-TE	5	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0287	0.023	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT115_LARGE_INTESTINE	0.9	1	0.0517	FALSE	499	1288	110	792	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	CCDC34--LGR4	5	3	CCDC34	2033	chr11:27384383:-	LGR4	15224	chr11:27434407:-	ONLY_REF_SPLICE	YES	241	43	0.03	0.16	0.0287	0.0172	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[2093],CCDC34->chr11:27352374-27385415:-,coiled-coil_domain_containing_34,LGR4->chr11:27387508-27494322:-,leucine-rich_repeat_containing_G_protein-coupled_receptor_4	HT115_LARGE_INTESTINE	0.03	0.16	0.0459	TRUE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	DMPK--RSPH6A	3	11	DMPK	5781	chr19:46280585:-	RSPH6A	17929	chr19:46308274:-	ONLY_REF_SPLICE	YES	59	0	0.19	1	0.0172	0.0632	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[13158],DMPK->chr19:46272975-46285810:-,dystrophia_myotonica_protein_kinase,RSPH6A->chr19:46298968-46318577:-,radial_spoke_head_6_homolog_A	HT115_LARGE_INTESTINE	0.19	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	FTH1--ACTB	5	3	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	10219	5	0	0.62	0.0287	0.0172	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HT115_LARGE_INTESTINE	0	0.62	0.0459	FALSE	1	0	0	97	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	19	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.95	1	0.0057	0.1092	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HT115_LARGE_INTESTINE	0.95	1	0.1149	FALSE	407	2205	196	549	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	BMP4--RPS19	5	2	BMP4	8572	chr14:54416954:-	RPS19	12410	chr19:42364325:+	INCL_NON_REF_SPLICE	YES	1379	2	0.01	0.78	0.0287	0.0115	BMP4->bone_morphogenetic_protein_4,chr14:54416454-54425479:-,RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19	HT115_LARGE_INTESTINE	0.01	0.78	0.0402	FALSE	0	0	0	5	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	CREBL2--KIAA1467	4	6	CREBL2	3662	chr12:12788908:+	KIAA1467	21041	chr12:13224175:+	ONLY_REF_SPLICE	YES	289	28	0.03	0.26	0.023	0.0345	{Klijn_CCL:Colo-Rectal=1},CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+,KIAA1467->chr12:13197218-13295455:+	HT115_LARGE_INTESTINE	0.03	0.26	0.0575	TRUE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	DMPK--RSPH6A	3	10	DMPK	5766	chr19:46280600:-	RSPH6A	17929	chr19:46308274:-	ONLY_REF_SPLICE	YES	59	0	0.18	1	0.0172	0.0575	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:-:[13158],DMPK->chr19:46272975-46285810:-,dystrophia_myotonica_protein_kinase,RSPH6A->chr19:46298968-46318577:-,radial_spoke_head_6_homolog_A	HT115_LARGE_INTESTINE	0.18	1	0.0747	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP11-108K3.1--GLDN	3	10	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0172	0.0575	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	HT115_LARGE_INTESTINE	0.93	1	0.0747	FALSE	0	19	0	46	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	ASS1--MT-CO3	5	1	ASS1	7359	chr9:133339534:+	MT-CO3	21796	chrM:9549:+	INCL_NON_REF_SPLICE	YES	4980	32435	0	0	0.0287	0.0057	ASS1->argininosuccinate_synthase_1,chr9:133320316-133376661:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HT115_LARGE_INTESTINE	0	0	0.0344	FALSE	0	0	0	12	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	DBP--MAMSTR	5	1	DBP	2859	chr19:49138837:-	MAMSTR	13436	chr19:49220000:-	ONLY_REF_SPLICE	YES	8	0	0.43	1	0.0287	0.0057	LOCAL_REARRANGEMENT:-:[75304],DBP->D-box_binding_PAR_bZIP_transcription_factor,chr19:49133287-49140695:-,MAMSTR->MEF2_activating_motif_and_SAP_domain_containing_transcriptional_regulator,chr19:49215999-49222978:-	HT115_LARGE_INTESTINE	0.43	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	OXSR1--SULT2A1	5	1	OXSR1	1858	chr3:38207437:+	SULT2A1	27918	chr19:48387042:-	ONLY_REF_SPLICE	YES	90	0	0.06	1	0.0287	0.0057	OXSR1->chr3:38206580-38296979:+,oxidative_stress_responsive_1,SULT2A1->chr19:48373723-48389654:-,sulfotransferase_family_2A_member_1	HT115_LARGE_INTESTINE	0.06	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	FTH1--ACTB	4	4	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	9691	3	0	0.73	0.023	0.023	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HT115_LARGE_INTESTINE	0	0.73	0.046	FALSE	1	0	0	97	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HT115_LARGE_INTESTINE	1	1	0.0287	TRUE	0	0	0	434	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	3	8	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0.046	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HT115_LARGE_INTESTINE	1	1	0.0632	FALSE	81	155	12	160	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	MKRN2--TSEN2	4	3	MKRN2	4779	chr3:12613872:+	TSEN2	20734	chr3:12558110:+	ONLY_REF_SPLICE	YES	233	184	0.03	0.04	0.023	0.0172	LOCAL_REARRANGEMENT:+:[17391],MKRN2->chr3:12598513-12625212:+,makorin_ring_finger_protein_2,TSEN2->chr3:12525931-12581122:+,tRNA_splicing_endonuclease_subunit_2	HT115_LARGE_INTESTINE	0.03	0.04	0.0402	TRUE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	NRIP1--AF127936.7	4	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.39	1	0.023	0.0172	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HT115_LARGE_INTESTINE	0.39	1	0.0402	FALSE	125	705	46	456	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	GCNT3--FAM81A	4	1	GCNT3	8882	chr15:59909080:+	FAM81A	29968	chr15:59799412:+	ONLY_REF_SPLICE	YES	1756	300	0	0.02	0.023	0.0057	LOCAL_REARRANGEMENT:+:[71326],GCNT3->Oncogene{Bushman},chr15:59887074-59932438:+,glucosaminyl_(N-acetyl)_transferase_3,_mucin_type,FAM81A->chr15:59664892-59815748:+,family_with_sequence_similarity_81_member_A	HT115_LARGE_INTESTINE	0	0.02	0.0287	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	MT-ND6--MT-TE	3	5	MT-ND6	1162	chrM:14512:-	MT-TE	4552	chrM:14716:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0172	0.0287	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HT115_LARGE_INTESTINE	0.89	1	0.0459	FALSE	499	1288	110	792	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RP11-216L13.19--TMEM141	3	4	RP11-216L13.19	7958	chr9:139702778:+	TMEM141	13571	chr9:139686703:+	ONLY_REF_SPLICE	YES	4	3197	0.64	0	0.0172	0.023	LOCAL_REARRANGEMENT:+:[5966],RP11-216L13.19->chr9:139693675-139704494:+,TMEM141->chr9:139685807-139687709:+,transmembrane_protein_141	HT115_LARGE_INTESTINE	0	0.64	0.0402	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1083	chr6:30691572:-	TUBBP2	4900	chr13:41959193:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.023	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HT115_LARGE_INTESTINE	1	1	0.023	TRUE	0	1	0	48	1	FALSE	ACH-000986
HT115_LARGE_INTESTINE	GPA33--RP11-277B15.2	3	3	GPA33	7116	chr1:167032819:-	RP11-277B15.2	17018	chr1:167146052:-	ONLY_REF_SPLICE	YES	2021	3	0	0.67	0.0172	0.0172	LOCAL_REARRANGEMENT:-:[85286],GPA33->Oncogene{Bushman},chr1:167022073-167059868:-,glycoprotein_A33,RP11-277B15.2->chr1:167145154-167165029:-	HT115_LARGE_INTESTINE	0	0.67	0.0344	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RP11-680G10.1--GSE1	2	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.47	0.0115	0.0402	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HT115_LARGE_INTESTINE	0.47	1	0.0517	TRUE	458	1351	185	561	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	SLC12A2--CTC-228N24.1	1	11	SLC12A2	5675	chr5:127466898:+	CTC-228N24.1	47533	chr5:127276874:+	ONLY_REF_SPLICE	YES	1762	43	0.01	0.22	0.0057	0.0632	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,CTC-228N24.1->chr5:127039082-127277326:+	HT115_LARGE_INTESTINE	0.01	0.22	0.0689	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	FTH1--ACTB	3	2	FTH1	1181	chr11:61734952:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	7065	4	0	0.56	0.0172	0.0115	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HT115_LARGE_INTESTINE	0	0.56	0.0287	FALSE	1	0	0	97	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	GCOM1--CGNL1	3	2	GCOM1	9060	chr15:57925939:+	CGNL1	56773	chr15:57835894:+	ONLY_REF_SPLICE	YES	88	0	0.05	1	0.0172	0.0115	LOCAL_REARRANGEMENT:+:[41181],GCOM1->GRINL1A_complex_locus_1,chr15:57884106-58006943:+,CGNL1->chr15:57668165-57842925:+,cingulin-like_1	HT115_LARGE_INTESTINE	0.05	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP11-274B21.1--RP11-155G14.5	3	2	RP11-274B21.1	6327	chr7:128220148:+	RP11-155G14.5	21140	chr7:128106617:+	ONLY_REF_SPLICE	YES	63	0	0.07	1	0.0172	0.0115	LOCAL_REARRANGEMENT:+:[62527],RP11-274B21.1->chr7:128171752-128269512:+,RP11-155G14.5->chr7:128106617-128109225:+	HT115_LARGE_INTESTINE	0.07	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	SLC12A2--CTC-228N24.1	1	10	SLC12A2	4535	chr5:127450373:+	CTC-228N24.1	47533	chr5:127276874:+	ONLY_REF_SPLICE	YES	2225	43	0	0.2	0.0057	0.0575	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,CTC-228N24.1->chr5:127039082-127277326:+	HT115_LARGE_INTESTINE	0	0.2	0.0632	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	YEATS4--LYZ	2	6	YEATS4	7243	chr12:69764755:+	LYZ	14497	chr12:69746000:+	ONLY_REF_SPLICE	YES	442	18083	0.02	0	0.0115	0.0345	LOCAL_REARRANGEMENT:+:[5469],YEATS4->YEATS_domain_containing_4,chr12:69753483-69784576:+,LYZ->chr12:69742121-69748014:+,lysozyme	HT115_LARGE_INTESTINE	0	0.02	0.046	FALSE	0	2	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	DIXDC1--HSPB2	3	1	DIXDC1	10723	chr11:111848519:+	HSPB2	32016	chr11:111784165:+	ONLY_REF_SPLICE	YES	2	3	0.67	0.57	0.0172	0.0057	LOCAL_REARRANGEMENT:+:[8294],DIXDC1->DIX_domain_containing_1,chr11:111797868-111893308:+,HSPB2->chr11:111782966-111789574:+,heat_shock_protein_family_B_(small)_member_2	HT115_LARGE_INTESTINE	0.57	0.67	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	SLC12A2--CTC-228N24.1	1	9	SLC12A2	3065	chr5:127448625:+	CTC-228N24.1	47533	chr5:127276874:+	ONLY_REF_SPLICE	YES	1493	43	0.01	0.19	0.0057	0.0517	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,CTC-228N24.1->chr5:127039082-127277326:+	HT115_LARGE_INTESTINE	0.01	0.19	0.0574	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	TNRC18--MT-CO3	3	1	TNRC18	16366	chr7:5410069:-	MT-CO3	41984	chrM:9565:+	INCL_NON_REF_SPLICE	YES	326	32586	0.01	0	0.0172	0.0057	TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HT115_LARGE_INTESTINE	0	0.01	0.0229	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	VWDE--PHF14	3	1	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	55	284	0.07	0.01	0.0172	0.0057	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HT115_LARGE_INTESTINE	0.01	0.07	0.0229	FALSE	0	6	0	17	2	FALSE	ACH-000986
HT115_LARGE_INTESTINE	JUP--MT-CO3	3	0	JUP	8242	chr17:39923795:-	MT-CO3	24128	chrM:9574:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0172	0	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HT115_LARGE_INTESTINE	1	1	0.0172	FALSE	0	0	0	33	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	JUP--MT-CO3	3	0	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0172	0	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HT115_LARGE_INTESTINE	1	1	0.0172	FALSE	0	0	0	33	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	KANSL1--ARL17B	2	4	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	64	102	0.09	0.06	0.0115	0.023	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HT115_LARGE_INTESTINE	0.06	0.09	0.0345	TRUE	105	90	7	93	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	LYZ--CCT2	3	0	LYZ	3682	chr12:69746078:+	CCT2	12770	chr12:69983265:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	LYZ->chr12:69742121-69748014:+,lysozyme,CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+	HT115_LARGE_INTESTINE	1	1	0.0172	TRUE	1	6	0	5	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0172	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HT115_LARGE_INTESTINE	1	1	0.0172	TRUE	0	0	0	434	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RBM17--IGF2R	3	0	RBM17	5548	chr10:6147060:+	IGF2R	59177	chr6:160510139:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	RBM17->RNA_binding_motif_protein_17,chr10:6130950-6159420:+,IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor	HT115_LARGE_INTESTINE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP11-120D5.1--MID1	2	4	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	81	0.55	0.07	0.0115	0.023	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HT115_LARGE_INTESTINE	0.07	0.55	0.0345	FALSE	0	48	1	163	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RP11-479O16.1--MSMO1	3	0	RP11-479O16.1	5344	chr5:58037749:-	MSMO1	15452	chr4:166263473:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0172	0	RP11-479O16.1->chr5:58037408-58112926:-,MSMO1->chr4:166248775-166264312:+,methylsterol_monooxygenase_1	HT115_LARGE_INTESTINE	1	1	0.0172	TRUE	0	0	0	5	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RPLP1--TAGLN2	3	0	RPLP1	1170	chr15:69745292:+	TAGLN2	12429	chr1:159888329:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0172	0	RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,TAGLN2->chr1:159887897-159895522:-,transgelin_2	HT115_LARGE_INTESTINE	1	1	0.0172	TRUE	0	0	0	4	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	UCHL5--SLMAP	3	0	UCHL5	1923	chr1:193028315:-	SLMAP	35238	chr3:57875768:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	UCHL5->Oncogene{Bushman},chr1:192981380-193029237:-,ubiquitin_C-terminal_hydrolase_L5,SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein	HT115_LARGE_INTESTINE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1068	chr6:30691587:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0172	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HT115_LARGE_INTESTINE	1	1	0.0172	TRUE	0	1	0	48	1	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RP11-274B21.1--RP11-155G14.5	2	3	RP11-274B21.1	7495	chr7:128232071:+	RP11-155G14.5	21140	chr7:128106617:+	ONLY_REF_SPLICE	YES	51	0	0.09	1	0.0115	0.0172	LOCAL_REARRANGEMENT:+:[62527],RP11-274B21.1->chr7:128171752-128269512:+,RP11-155G14.5->chr7:128106617-128109225:+	HT115_LARGE_INTESTINE	0.09	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	C10orf112--PLXDC2	1	6	C10orf112	29174	chr10:19981483:+	PLXDC2	37923	chr10:20290704:+	ONLY_REF_SPLICE	YES	17	71	0.29	0.09	0.0057	0.0345	NEIGHBORS[25838],C10orf112->chr10:19492779-20079330:+,PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2	HT115_LARGE_INTESTINE	0.09	0.29	0.0402	FALSE	13	21	4	3	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	KANSL1--ARL17B	2	2	KANSL1	9741	chr17:44171926:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	58	3	0.06	0.57	0.0115	0.0115	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HT115_LARGE_INTESTINE	0.06	0.57	0.023	TRUE	51	25	1	17	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	LGALS3--MAPK1IP1L	2	2	LGALS3	5576	chr14:55607081:+	MAPK1IP1L	17512	chr14:55531334:+	ONLY_REF_SPLICE	YES	9913	467	0	0.01	0.0115	0.0115	LOCAL_REARRANGEMENT:+:[53918],LGALS3->Oncogene{Bushman},chr14:55590828-55612126:+,lectin,_galactoside_binding_soluble_3,MAPK1IP1L->chr14:55518349-55536910:+,mitogen-activated_protein_kinase_1_interacting_protein_1-like	HT115_LARGE_INTESTINE	0	0.01	0.023	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	ANXA2--NARG2	2	1	ANXA2	3600	chr15:60689457:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	YES	467	168	0.01	0.02	0.0115	0.0057	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	HT115_LARGE_INTESTINE	0.01	0.02	0.0172	FALSE	0	0	0	3	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	CAMK2G--C10orf55	2	1	CAMK2G	5650	chr10:75612012:-	C10orf55	29181	chr10:75676399:-	ONLY_REF_SPLICE	YES	301	0	0.01	1	0.0115	0.0057	LOCAL_REARRANGEMENT:-:[35384],CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-,C10orf55->chr10:75669727-75682535:-,chromosome_10_open_reading_frame_55	HT115_LARGE_INTESTINE	0.01	1	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	CPSF6--HEATR2	2	1	CPSF6	11046	chr12:69656342:+	HEATR2	40282	chr7:825154:+	ONLY_REF_SPLICE	YES	351	381	0.01	0.01	0.0115	0.0057	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,HEATR2->chr7:766338-829190:+	HT115_LARGE_INTESTINE	0.01	0.01	0.0172	FALSE	0	2	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RP11-108K3.1--GLDN	1	5	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0057	0.0287	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	HT115_LARGE_INTESTINE	1	1	0.0344	FALSE	1	20	0	46	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	ZBTB38--ACPL2	2	1	ZBTB38	15531	chr3:141122873:+	ACPL2	46684	chr3:141006156:+	ONLY_REF_SPLICE	YES	267	100	0.01	0.03	0.0115	0.0057	LOCAL_REARRANGEMENT:+:[29307],ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38,ACPL2->chr3:140947568-141013748:+	HT115_LARGE_INTESTINE	0.01	0.03	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	AC073610.5--ZNF558	2	0	AC073610.5	1009	chr12:49333438:-	ZNF558	6859	chr19:8942077:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	AC073610.5->chr12:49315767-49333446:-,ZNF558->chr19:8920380-8943004:-,zinc_finger_protein_558	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	C14orf105--STYX	2	0	C14orf105	8353	chr14:57942300:-	STYX	18416	chr14:53213144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},C14orf105->chr14:57936019-57960585:-,chromosome_14_open_reading_frame_105,STYX->chr14:53196898-53241716:+,serine/threonine/tyrosine_interacting_protein	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	2	0	2	2	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CAPZB--MINOS1	2	0	CAPZB	1137	chr1:19811930:-	MINOS1	25045	chr1:19948594:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	GTEx_v2:{count=5;pct=0.06%;dist=Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1},CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	1	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CCDC14--MYH14	2	0	CCDC14	1574	chr3:123679991:-	MYH14	66269	chr19:50804918:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14,MYH14->chr19:50691443-50813802:+,myosin,_heavy_chain_14,_non-muscle	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CNPY2--PKP2	2	0	CNPY2	2486	chr12:56708635:-	PKP2	23665	chr12:32955490:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	CNPY2->canopy_FGF_signaling_regulator_2,chr12:56703626-56710120:-,PKP2->chr12:32943679-33049774:-,plakophilin_2	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CTA-292E10.6--PITPNB	2	0	CTA-292E10.6	1055	chr22:29196725:+	PITPNB	16045	chr22:28293880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	CTA-292E10.6->chr22:29196671-29244547:+,PITPNB->chr22:28247657-28316122:-,phosphatidylinositol_transfer_protein_beta	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	ERBB2IP--SET	2	0	ERBB2IP	1332	chr5:65222634:+	SET	43218	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	ERBB2IP->chr5:65222303-65378377:+,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	ERP44--COA6	2	0	ERP44	11146	chr9:102768788:-	COA6	20559	chr1:234509976:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44,COA6->chr1:234509202-234519795:+,cytochrome_c_oxidase_assembly_factor_6	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	GIGYF2--EIF4E2	2	0	GIGYF2	1094	chr2:233562102:+	EIF4E2	63237	chr2:233428957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,EIF4E2->chr2:233414762-233448354:+,eukaryotic_translation_initiation_factor_4E_family_member_2	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	GNAQ--METAP1	2	0	GNAQ	3129	chr9:80537077:-	METAP1	22549	chr4:99950018:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	GNAQ->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_q,Oncogene{Bushman},OncomapV4_panel,chr9:80331003-80646374:-,METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	3	14	2	43	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	MANBAL--ANXA2	2	0	MANBAL	1049	chr20:35918089:+	ANXA2	27671	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	MANBAL->chr20:35918041-35945663:+,mannosidase_beta_like,ANXA2->annexin_A2,chr15:60639333-60695082:-	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	METTL16--PAFAH1B1	2	0	METTL16	2261	chr17:2405498:-	PAFAH1B1	42805	chr17:2585023:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},LOCAL_INVERSION:-:+:[81319],METTL16->chr17:2308856-2415185:-,methyltransferase_like_16,PAFAH1B1->chr17:2496504-2588909:+,platelet_activating_factor_acetylhydrolase_1b_regulatory_subunit_1	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	NAA25--TRAFD1	2	0	NAA25	1307	chr12:112546520:-	TRAFD1	37333	chr12:112568315:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	LOCAL_INVERSION:-:+:[16479],NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,TRAFD1->TRAF-type_zinc_finger_domain_containing_1,chr12:112563305-112591407:+	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	NOP2--NCAPD2	2	0	NOP2	1876	chr12:6676982:-	NCAPD2	23423	chr12:6630152:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	LOCAL_INVERSION:-:+:[24908],NOP2->NOP2_nucleolar_protein,chr12:6666029-6677857:-,NCAPD2->Oncogene{Bushman},chr12:6602522-6641121:+,non-SMC_condensin_I_complex_subunit_D2	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	OTUB1--COX8A	2	0	OTUB1	3602	chr11:63756224:+	COX8A	14254	chr11:63743697:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[9310],OTUB1->OTU_deubiquitinase,_ubiquitin_aldehyde_binding_1,chr11:63753325-63769283:+,COX8A->chr11:63742079-63744015:+,cytochrome_c_oxidase_subunit_8A	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	1	0	4	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	PRRC2C--C12orf65	2	0	PRRC2C	10380	chr1:171491398:+	C12orf65	53034	chr12:123738194:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C,C12orf65->chr12:123717463-123742506:+,chromosome_12_open_reading_frame_65	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RBM6--RHOA	2	0	RBM6	1219	chr3:49977658:+	RHOA	37115	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Lung=1,Pituitary=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	1	0	1	1	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RBX1--PDCD4	2	0	RBX1	2209	chr22:41349637:+	PDCD4	15007	chr10:112640991:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	RBX1->Oncogene{Bushman},chr22:41347351-41369313:+,ring-box_1,PDCD4->Oncogene{Bushman},chr10:112631565-112659764:+,programmed_cell_death_4_(neoplastic_transformation_inhibitor)	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP11-440L14.1--CTBP1	2	0	RP11-440L14.1	1078	chr4:775560:-	CTBP1	11273	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	RP11-440L14.1->chr4:756175-775637:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	2	0	7	2	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP5-1033H22.2--RAF1	2	0	RP5-1033H22.2	1310	chr1:94058065:+	RAF1	28719	chr3:12626752:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	RP5-1033H22.2->chr1:94057756-94071130:+,RAF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},Raf-1_proto-oncogene,_serine/threonine_kinase,chr3:12625100-12705725:-	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RPTOR--TXNRD1	2	0	RPTOR	1973	chr17:78519591:+	TXNRD1	61801	chr12:104703537:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RPUSD3--TIAL1	2	0	RPUSD3	3620	chr3:9883667:-	TIAL1	21802	chr10:121336262:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	RPUSD3->RNA_pseudouridylate_synthase_domain_containing_3,chr3:9879533-9886286:-,TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	STK3--PSMB1	2	0	STK3	11120	chr8:99837743:-	PSMB1	41468	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	TBC1D5--WLS	2	0	TBC1D5	2479	chr3:17783973:-	WLS	57610	chr1:68659910:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-,WLS->chr1:68564142-68698803:-,wntless_Wnt_ligand_secretion_mediator	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	TJP3--ZBTB7A	2	0	TJP3	1453	chr19:3708559:+	ZBTB7A	25259	chr19:4055245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0115	0	TJP3->chr19:3708107-3750811:+,tight_junction_protein_3,ZBTB7A->chr19:4044362-4066943:-,zinc_finger_and_BTB_domain_containing_7A	HT115_LARGE_INTESTINE	1	1	0.0115	TRUE	0	0	0	1	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	PRRG1--LANCL3	1	3	PRRG1	4586	chrX:37285253:+	LANCL3	17056	chrX:37514941:+	ONLY_REF_SPLICE	NO	81	11	0.05	0.27	0.0057	0.0172	PRRG1->chrX:37208528-37316548:+,proline_rich_and_Gla_domain_1,LANCL3->LanC_like_3,chrX:37430822-37543716:+	HT115_LARGE_INTESTINE	0.05	0.27	0.0229	TRUE	1	2	0	5	2	TRUE	ACH-000986
HT115_LARGE_INTESTINE	CFD--AC006273.5	1	2	CFD	3504	chr19:861956:+	AC006273.5	9471	chr19:784815:+	ONLY_REF_SPLICE	NO	535	12	0.01	0.2	0.0057	0.0115	LOCAL_REARRANGEMENT:+:[74373],CFD->chr19:859453-863453:+,complement_factor_D_(adipsin),AC006273.5->chr19:782755-785080:+	HT115_LARGE_INTESTINE	0.01	0.2	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	CMTM8--CMTM7	1	2	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	NO	200	240	0.01	0.01	0.0057	0.0115	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	HT115_LARGE_INTESTINE	0.01	0.01	0.0172	FALSE	118	557	29	88	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	WIPF2--CASC3	1	2	WIPF2	1214	chr17:38375769:+	CASC3	22180	chr17:38318006:+	ONLY_REF_SPLICE	NO	50	342	0.06	0.01	0.0057	0.0115	LOCAL_REARRANGEMENT:+:[47120],WIPF2->WAS/WASL_interacting_protein_family_member_2,chr17:38375556-38440388:+,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	HT115_LARGE_INTESTINE	0.01	0.06	0.0172	FALSE	0	1	0	1	1	FALSE	ACH-000986
HT115_LARGE_INTESTINE	ZBTB38--ACPL2	1	2	ZBTB38	7445	chr3:141105779:+	ACPL2	44521	chr3:140997184:+	ONLY_REF_SPLICE	YES	261	130	0.01	0.02	0.0057	0.0115	LOCAL_REARRANGEMENT:+:[29307],ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38,ACPL2->chr3:140947568-141013748:+	HT115_LARGE_INTESTINE	0.01	0.02	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	ASS1--HMCN2	1	1	ASS1	5133	chr9:133329760:+	HMCN2	69267	chr9:133285958:+	ONLY_REF_SPLICE	NO	4885	11	0	0.15	0.0057	0.0057	LOCAL_REARRANGEMENT:+:[10806],ASS1->argininosuccinate_synthase_1,chr9:133320316-133376661:+,HMCN2->chr9:133046882-133309510:+,hemicentin_2	HT115_LARGE_INTESTINE	0	0.15	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	ATG4B--DTYMK	1	1	ATG4B	3487	chr2:242590750:+	DTYMK	25894	chr2:242618064:-	ONLY_REF_SPLICE	YES	550	781	0	0	0.0057	0.0057	LOCAL_INVERSION:+:-:[1885],ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+,DTYMK->chr2:242615157-242626406:-,deoxythymidylate_kinase	HT115_LARGE_INTESTINE	0	0	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	C17orf76-AS1--LURAP1L	1	1	C17orf76-AS1	1593	chr17:16342728:+	LURAP1L	16589	chr9:12821385:+	ONLY_REF_SPLICE	NO	246	436	0.01	0	0.0057	0.0057	C17orf76-AS1->chr17:16342136-16381992:+,LURAP1L->chr9:12775020-12822130:+,leucine_rich_adaptor_protein_1_like	HT115_LARGE_INTESTINE	0	0.01	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	CIRH1A--CYB5B	1	1	CIRH1A	18643	chr16:69199429:+	CYB5B	28237	chr16:69481053:+	ONLY_REF_SPLICE	NO	316	3189	0.01	0	0.0057	0.0057	CIRH1A->chr16:69165194-69265033:+,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	HT115_LARGE_INTESTINE	0	0.01	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	CSTB--CSDE1	1	1	CSTB	1242	chr21:45196085:-	CSDE1	15505	chr1:115282346:-	ONLY_REF_SPLICE	NO	1459	1557	0	0	0.0057	0.0057	CSTB->Oncogene{Bushman},chr21:45192393-45196326:-,cystatin_B,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	HT115_LARGE_INTESTINE	0	0	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	DENND1A--PSMB7	1	1	DENND1A	2335	chr9:126641230:-	PSMB7	50112	chr9:127146935:-	ONLY_REF_SPLICE	YES	263	1498	0.01	0	0.0057	0.0057	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Heart_-_Atrial_Appendage=1},DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7	HT115_LARGE_INTESTINE	0	0.01	0.0114	FALSE	0	1	0	2	1	FALSE	ACH-000986
HT115_LARGE_INTESTINE	ERCC5--TM2D1	1	1	ERCC5	2511	chr13:103498704:+	TM2D1	25023	chr1:62189456:-	ONLY_REF_SPLICE	NO	107	311	0.02	0.01	0.0057	0.0057	ERCC5->Oncogene{Bushman},chr13:103497194-103528345:+,excision_repair_cross-complementation_group_5,TM2D1->TM2_domain_containing_1,chr1:62146718-62191095:-	HT115_LARGE_INTESTINE	0.01	0.02	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	GET4--ADAP1	1	1	GET4	8788	chr7:930703:+	ADAP1	24910	chr7:959687:-	ONLY_REF_SPLICE	YES	676	915	0	0	0.0057	0.0057	LOCAL_INVERSION:+:-:[1467],GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4,ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-	HT115_LARGE_INTESTINE	0	0	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	GUCD1--SUN1	1	1	GUCD1	5075	chr22:24942882:-	SUN1	26039	chr7:891021:+	ONLY_REF_SPLICE	YES	794	552	0	0	0.0057	0.0057	GUCD1->chr22:24936406-24951903:-,guanylyl_cyclase_domain_containing_1,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	HT115_LARGE_INTESTINE	0	0	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	HSP90AB1--EIF4G2	1	1	HSP90AB1	5522	chr6:44219345:+	EIF4G2	19261	chr11:10822194:-	ONLY_REF_SPLICE	YES	9862	2434	0	0	0.0057	0.0057	GTEx&tcga_normals:1/3694=0.03%,HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2	HT115_LARGE_INTESTINE	0	0	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	IBTK--ME1	1	1	IBTK	1193	chr6:82957279:-	ME1	44518	chr6:83949355:-	ONLY_REF_SPLICE	YES	269	457	0.01	0	0.0057	0.0057	IBTK->chr6:82879700-82957471:-,inhibitor_of_Bruton_tyrosine_kinase,ME1->chr6:83920108-84140797:-,malic_enzyme_1	HT115_LARGE_INTESTINE	0	0.01	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	KB-1047C11.2--PLEKHF2	1	1	KB-1047C11.2	1857	chr8:96217540:+	PLEKHF2	14281	chr8:96166259:+	ONLY_REF_SPLICE	YES	0	65	1	0.03	0.0057	0.0057	LOCAL_REARRANGEMENT:+:[47772],KB-1047C11.2->chr8:96216684-96822364:+,PLEKHF2->chr8:96146032-96168912:+,pleckstrin_homology_and_FYVE_domain_containing_2	HT115_LARGE_INTESTINE	0.03	1	0.0114	TRUE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	LIMK2--EIF4ENIF1	1	1	LIMK2	15659	chr22:31671294:+	EIF4ENIF1	44060	chr22:31836854:-	ONLY_REF_SPLICE	YES	429	55	0	0.04	0.0057	0.0057	LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+,EIF4ENIF1->chr22:31832963-31892094:-,eukaryotic_translation_initiation_factor_4E_nuclear_import_factor_1	HT115_LARGE_INTESTINE	0	0.04	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	MAPKAPK5--ALDH2	1	1	MAPKAPK5	13204	chr12:112323840:+	ALDH2	32323	chr12:112235882:+	ONLY_REF_SPLICE	NO	563	968	0	0	0.0057	0.0057	{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:+:[32000],MAPKAPK5->chr12:112279782-112334343:+,mitogen-activated_protein_kinase-activated_protein_kinase_5,ALDH2->Oncogene{Bushman},aldehyde_dehydrogenase_2_family_(mitochondrial),chr12:112204691-112247782:+	HT115_LARGE_INTESTINE	0	0	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	MINK1--PELP1	1	1	MINK1	1253	chr17:4736935:+	PELP1	23411	chr17:4594737:-	ONLY_REF_SPLICE	YES	788	386	0	0.01	0.0057	0.0057	MINK1->chr17:4736683-4801356:+,misshapen_like_kinase_1,PELP1->chr17:4574679-4607632:-,proline,_glutamate_and_leucine_rich_protein_1	HT115_LARGE_INTESTINE	0	0.01	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	MKRN1--NDUFB2	1	1	MKRN1	1410	chr7:140178960:-	NDUFB2	24066	chr7:140402666:+	ONLY_REF_SPLICE	YES	1334	2056	0	0	0.0057	0.0057	GTEx_FI:{Muscle=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=4,Pancreas=1,Esophagus_-_Mucosa=1},MKRN1->chr7:140152840-140179369:-,makorin_ring_finger_protein_1,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	HT115_LARGE_INTESTINE	0	0	0.0114	FALSE	2	1	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	NIF3L1--CAPRIN1	1	1	NIF3L1	1326	chr2:201754375:+	CAPRIN1	25285	chr11:34110942:+	ONLY_REF_SPLICE	YES	64	1203	0.03	0	0.0057	0.0057	NIF3L1->NGG1_interacting_factor_3_like_1,chr2:201754050-201768655:+,CAPRIN1->cell_cycle_associated_protein_1,chr11:34073230-34122703:+	HT115_LARGE_INTESTINE	0	0.03	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	NRD1--KLK1	1	1	NRD1	4417	chr1:52305898:-	KLK1	40049	chr19:51323699:-	ONLY_REF_SPLICE	NO	394	367	0.01	0.01	0.0057	0.0057	NRD1->chr1:52254863-52344477:-,KLK1->chr19:51322404-51327043:-,kallikrein_1	HT115_LARGE_INTESTINE	0.01	0.01	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	PAAF1--RAB6A	1	1	PAAF1	2651	chr11:73589864:+	RAB6A	22977	chr11:73441868:-	ONLY_REF_SPLICE	NO	10	507	0.17	0	0.0057	0.0057	PAAF1->chr11:73587744-73638790:+,proteasomal_ATPase_associated_factor_1,RAB6A->RAB6A,_member_RAS_oncogene_family,chr11:73386683-73472182:-	HT115_LARGE_INTESTINE	0	0.17	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	PACSIN2--TSPO	1	1	PACSIN2	1125	chr22:43411027:-	TSPO	28807	chr22:43555216:+	ONLY_REF_SPLICE	YES	263	43	0.01	0.04	0.0057	0.0057	PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,TSPO->chr22:43547520-43559248:+,translocator_protein	HT115_LARGE_INTESTINE	0.01	0.04	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	PCM1--RP11-806O11.1	1	1	PCM1	19498	chr8:17817953:+	RP11-806O11.1	51717	chr8:17677867:+	ONLY_REF_SPLICE	YES	121	0	0.02	1	0.0057	0.0057	PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1,RP11-806O11.1->chr8:17666450-17678377:+	HT115_LARGE_INTESTINE	0.02	1	0.0114	TRUE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	PHF3--CDX2	1	1	PHF3	1331	chr6:64346055:+	CDX2	34902	chr13:28539152:-	ONLY_REF_SPLICE	NO	76	1801	0.03	0	0.0057	0.0057	PHF3->PHD_finger_protein_3,chr6:64345725-64489229:+,CDX2->Oncogene{Bushman},caudal_type_homeobox_2,chr13:28536274-28545276:-	HT115_LARGE_INTESTINE	0	0.03	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	PMPCA--CCT5	1	1	PMPCA	5398	chr9:139310843:+	CCT5	22401	chr5:10260904:+	ONLY_REF_SPLICE	NO	460	5600	0	0	0.0057	0.0057	PMPCA->chr9:139305110-139318213:+,peptidase,_mitochondrial_processing_alpha_subunit,CCT5->chaperonin_containing_TCP1_subunit_5,chr5:10250033-10266524:+	HT115_LARGE_INTESTINE	0	0	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	PPP4R1--COG4	1	1	PPP4R1	10368	chr18:9584513:-	COG4	43929	chr16:70524295:-	ONLY_REF_SPLICE	YES	135	443	0.01	0	0.0057	0.0057	PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,COG4->chr16:70514471-70557468:-,component_of_oligomeric_golgi_complex_4	HT115_LARGE_INTESTINE	0	0.01	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RAPGEF6--CTD-2410N18.5	1	1	RAPGEF6	1275	chr5:130970655:-	CTD-2410N18.5	48968	chr5:133509713:-	ONLY_REF_SPLICE	YES	29	3	0.06	0.4	0.0057	0.0057	RAPGEF6->Rap_guanine_nucleotide_exchange_factor_6,chr5:130759614-130970929:-,CTD-2410N18.5->chr5:133502861-133561762:-	HT115_LARGE_INTESTINE	0.06	0.4	0.0114	TRUE	0	0	0	2	0	TRUE	ACH-000986
HT115_LARGE_INTESTINE	RP11-519G16.3--SPATA5L1	1	1	RP11-519G16.3	7008	chr15:45768750:+	SPATA5L1	18489	chr15:45697518:+	ONLY_REF_SPLICE	YES	5	105	0.29	0.02	0.0057	0.0057	LOCAL_REARRANGEMENT:+:[27008],RP11-519G16.3->chr15:45740625-45805965:+,SPATA5L1->chr15:45694529-45713617:+,spermatogenesis_associated_5_like_1	HT115_LARGE_INTESTINE	0.02	0.29	0.0114	TRUE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	RP13-977J11.8--NOC4L	1	1	RP13-977J11.8	1121	chr12:132674878:+	NOC4L	10383	chr12:132635526:+	ONLY_REF_SPLICE	YES	1	229	0.67	0.01	0.0057	0.0057	LOCAL_REARRANGEMENT:+:[37745],RP13-977J11.8->chr12:132674758-132675542:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	HT115_LARGE_INTESTINE	0.01	0.67	0.0114	FALSE	0	3	0	2	2	FALSE	ACH-000986
HT115_LARGE_INTESTINE	SMAGP--BIN2	1	1	SMAGP	5866	chr12:51640535:-	BIN2	16349	chr12:51696925:-	ONLY_REF_SPLICE	YES	973	1	0	0.67	0.0057	0.0057	LOCAL_REARRANGEMENT:-:[10148],SMAGP->chr12:51638342-51664674:-,small_cell_adhesion_glycoprotein,BIN2->bridging_integrator_2,chr12:51674822-51718452:-	HT115_LARGE_INTESTINE	0	0.67	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	SS18L1--ACTN4	1	1	SS18L1	1124	chr20:60718945:+	ACTN4	20667	chr19:39191240:+	ONLY_REF_SPLICE	NO	30	4326	0.06	0	0.0057	0.0057	SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+	HT115_LARGE_INTESTINE	0	0.06	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	TNPO1--CDH7	1	1	TNPO1	7431	chr5:72157741:+	CDH7	52148	chr18:63526944:+	ONLY_REF_SPLICE	YES	270	0	0.01	1	0.0057	0.0057	TNPO1->chr5:72112139-72212560:+,transportin_1,CDH7->cadherin_7,chr18:63417488-63548638:+	HT115_LARGE_INTESTINE	0.01	1	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	TUBGCP2--ECHS1	1	1	TUBGCP2	18875	chr10:135096582:-	ECHS1	28131	chr10:135182526:-	ONLY_REF_SPLICE	YES	422	2237	0	0	0.0057	0.0057	LOCAL_REARRANGEMENT:-:[50143],TUBGCP2->chr10:135093135-135125841:-,tubulin_gamma_complex_associated_protein_2,ECHS1->chr10:135175984-135187193:-,enoyl-CoA_hydratase,_short_chain,_1,_mitochondrial	HT115_LARGE_INTESTINE	0	0	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	UNC13B--RAB40C	1	1	UNC13B	6967	chr9:35243361:+	RAB40C	42434	chr16:667208:+	ONLY_REF_SPLICE	YES	205	133	0.01	0.01	0.0057	0.0057	UNC13B->chr9:35161999-35405335:+,unc-13_homolog_B_(C._elegans),RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+	HT115_LARGE_INTESTINE	0.01	0.01	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	USP10--ZDHHC7	1	1	USP10	7066	chr16:84767109:+	ZDHHC7	25753	chr16:85029613:-	ONLY_REF_SPLICE	YES	958	2	0	0.5	0.0057	0.0057	USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,ZDHHC7->Oncogene{Bushman},chr16:85007787-85045141:-,zinc_finger_DHHC-type_containing_7	HT115_LARGE_INTESTINE	0	0.5	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	YWHAE--ABR	1	1	YWHAE	1332	chr17:1303341:-	ABR	20686	chr17:1057531:-	ONLY_REF_SPLICE	YES	5072	14	0	0.12	0.0057	0.0057	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	HT115_LARGE_INTESTINE	0	0.12	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	ZBTB38--ACPL2	1	1	ZBTB38	4883	chr3:141100329:+	ACPL2	44521	chr3:140997184:+	ONLY_REF_SPLICE	NO	312	130	0.01	0.02	0.0057	0.0057	LOCAL_REARRANGEMENT:+:[29307],ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38,ACPL2->chr3:140947568-141013748:+	HT115_LARGE_INTESTINE	0.01	0.02	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
HT115_LARGE_INTESTINE	ZBTB38--ACPL2	1	1	ZBTB38	3820	chr3:141088788:+	ACPL2	44521	chr3:140997184:+	ONLY_REF_SPLICE	NO	352	130	0.01	0.02	0.0057	0.0057	LOCAL_REARRANGEMENT:+:[29307],ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38,ACPL2->chr3:140947568-141013748:+	HT115_LARGE_INTESTINE	0.01	0.02	0.0114	FALSE	0	0	0	1	0	FALSE	ACH-000986
RS5_FIBROBLAST	COL1A1--FN1	575	60	COL1A1	12966	chr17:48266809:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	11590	7634	0.05	0.08	5.2186	0.5445	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	RS5_FIBROBLAST	0.05	0.08	5.7631	TRUE	0	0	0	17	0	FALSE	ACH-000531
RS5_FIBROBLAST	FN1--COL1A1	442	10	FN1	36954	chr2:216243980:-	COL1A1	69586	chr17:48264124:-	INCL_NON_REF_SPLICE	YES	10906	9208	0.04	0.05	4.0115	0.0908	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	RS5_FIBROBLAST	0.04	0.05	4.1023	TRUE	0	0	0	13	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--FN1	147	9	COL1A1	5208	chr17:48274567:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	NO	9883	7634	0.02	0.02	1.3341	0.0817	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	RS5_FIBROBLAST	0.02	0.02	1.4158	TRUE	0	0	0	9	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	107	90	COL1A1	15399	chr17:48264376:-	COL4A1	28383	chr13:110861774:-	ONLY_REF_SPLICE	YES	10875	1798	0.02	0.1	0.9711	0.8168	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0.02	0.1	1.7879	TRUE	0	0	0	3	0	FALSE	ACH-000531
RS5_FIBROBLAST	CD63--TGFBI	122	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1072	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	RS5_FIBROBLAST	1	1	1.1072	TRUE	0	0	0	14	0	TRUE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	75	34	COL1A1	13511	chr17:48266264:-	COL4A1	46773	chr13:110830438:-	INCL_NON_REF_SPLICE	YES	10337	1557	0.01	0.07	0.6807	0.3086	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0.01	0.07	0.9893	TRUE	0	0	0	3	0	FALSE	ACH-000531
RS5_FIBROBLAST	TIMM23B--LINC00843	68	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6172	0.1724	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RS5_FIBROBLAST	1	1	0.7896	TRUE	508	994	45	981	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A2--COL15A1	64	1	COL1A2	26236	chr7:94053755:+	COL15A1	60203	chr9:101807017:+	ONLY_REF_SPLICE	NO	8354	310	0.01	0.17	0.5808	0.0091	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL15A1->chr9:101705461-101833069:+,collagen_type_XV_alpha_1	RS5_FIBROBLAST	0.01	0.17	0.5899	TRUE	0	0	0	1	0	FALSE	ACH-000531
RS5_FIBROBLAST	FN1--COL1A1	53	7	FN1	19505	chr2:216271170:-	COL1A1	69586	chr17:48264124:-	INCL_NON_REF_SPLICE	YES	9257	9208	0.01	0.01	0.481	0.0635	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	RS5_FIBROBLAST	0.01	0.01	0.5445	TRUE	0	0	0	4	0	FALSE	ACH-000531
RS5_FIBROBLAST	KANSL1--ARL17B	39	23	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	10	11	0.86	0.85	0.354	0.2087	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	RS5_FIBROBLAST	0.85	0.86	0.5627	TRUE	181	1564	124	196	0	FALSE	ACH-000531
RS5_FIBROBLAST	TIMM23--RP11-464F9.1	43	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	148	0	0.23	1	0.3903	0.0091	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RS5_FIBROBLAST	0.23	1	0.3994	TRUE	519	3926	326	965	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	24	61	COL1A1	13020	chr17:48266755:-	COL4A1	27796	chr13:110862361:-	INCL_NON_REF_SPLICE	NO	10829	1640	0.01	0.05	0.2178	0.5536	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0.01	0.05	0.7714	FALSE	0	0	0	3	0	FALSE	ACH-000531
RS5_FIBROBLAST	MT-TA--MT-TC	36	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3267	0.0454	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RS5_FIBROBLAST	1	1	0.3721	FALSE	462	80	0	856	0	FALSE	ACH-000531
RS5_FIBROBLAST	MT-ND6--MT-TE	36	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3267	0.0091	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS5_FIBROBLAST	1	1	0.3358	FALSE	499	1288	110	792	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	27	9	COL1A1	7102	chr17:48272673:-	COL4A1	48387	chr13:110828824:-	INCL_NON_REF_SPLICE	YES	12287	2511	0	0.01	0.245	0.0817	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.01	0.3267	TRUE	0	0	0	1	0	FALSE	ACH-000531
RS5_FIBROBLAST	RP11-680G10.1--GSE1	28	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	14	1	0.7	0.2541	0.0363	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RS5_FIBROBLAST	0.7	1	0.2904	TRUE	465	1949	224	605	0	FALSE	ACH-000531
RS5_FIBROBLAST	CLTC--RPS6KB1	27	7	CLTC	2524	chr17:57721844:+	RPS6KB1	46421	chr17:58007478:+	ONLY_REF_SPLICE	YES	302	24	0.1	0.59	0.245	0.0635	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	RS5_FIBROBLAST	0.1	0.59	0.3085	TRUE	0	0	0	1	0	TRUE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	26	10	COL1A1	5789	chr17:48273986:-	COL4A1	43061	chr13:110835623:-	INCL_NON_REF_SPLICE	NO	10043	2833	0	0.01	0.236	0.0908	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.01	0.3268	FALSE	0	0	0	3	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	15	50	COL1A1	12369	chr17:48267406:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	12197	1823	0.01	0.03	0.1361	0.4538	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0.01	0.03	0.5899	TRUE	0	0	0	4	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	22	20	COL1A1	6491	chr17:48273284:-	COL4A1	32982	chr13:110855945:-	INCL_NON_REF_SPLICE	YES	12232	2030	0	0.02	0.1997	0.1815	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.02	0.3812	TRUE	0	0	0	4	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A2--COL15A1	27	0	COL1A2	8773	chr7:94035615:+	COL15A1	60203	chr9:101807017:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.245	0	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL15A1->chr9:101705461-101833069:+,collagen_type_XV_alpha_1	RS5_FIBROBLAST	1	1	0.245	TRUE	0	0	0	1	0	TRUE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	3	85	COL1A1	14913	chr17:48264862:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	NO	9502	1823	0.01	0.05	0.0272	0.7714	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0.01	0.05	0.7986	FALSE	0	0	0	2	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--FN1	11	50	COL1A1	15650	chr17:48264125:-	FN1	58080	chr2:216243979:-	INCL_NON_REF_SPLICE	YES	9215	10939	0.01	0.01	0.0998	0.4538	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	RS5_FIBROBLAST	0.01	0.01	0.5536	TRUE	0	0	0	18	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	3	68	COL1A1	13224	chr17:48266551:-	COL4A1	34059	chr13:110853825:-	INCL_NON_REF_SPLICE	YES	12010	1813	0.01	0.04	0.0272	0.6172	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0.01	0.04	0.6444	TRUE	0	0	0	2	0	FALSE	ACH-000531
RS5_FIBROBLAST	MT-ND6--MT-TE	16	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	7	0	0.82	1	0.1452	0.1452	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS5_FIBROBLAST	0.82	1	0.2904	FALSE	499	1288	110	792	0	FALSE	ACH-000531
RS5_FIBROBLAST	RP11-680G10.1--GSE1	17	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1543	0.0908	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RS5_FIBROBLAST	1	1	0.2451	TRUE	458	1351	185	561	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	2	66	COL1A1	13037	chr17:48266738:-	COL4A1	32973	chr13:110855954:-	ONLY_REF_SPLICE	YES	11643	2157	0.01	0.03	0.0182	0.599	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0.01	0.03	0.6172	TRUE	0	0	0	4	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--FN1	4	58	COL1A1	12718	chr17:48267057:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	12914	7634	0	0.01	0.0363	0.5264	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	RS5_FIBROBLAST	0	0.01	0.5627	TRUE	0	0	0	17	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	4	53	COL1A1	12547	chr17:48267228:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	NO	12823	1823	0	0.03	0.0363	0.481	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.03	0.5173	FALSE	0	0	0	4	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	3	53	COL1A1	14465	chr17:48265310:-	COL4A1	41987	chr13:110838805:-	INCL_NON_REF_SPLICE	NO	10144	2152	0.01	0.03	0.0272	0.481	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0.01	0.03	0.5082	FALSE	0	0	0	2	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	10	23	COL1A1	6830	chr17:48272945:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	NO	10776	1823	0	0.02	0.0908	0.2087	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.02	0.2995	FALSE	0	0	0	3	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	9	27	COL1A1	12984	chr17:48266791:-	COL4A1	45888	chr13:110831323:-	INCL_NON_REF_SPLICE	YES	10738	2104	0	0.02	0.0817	0.245	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.02	0.3267	TRUE	0	0	0	3	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A2--COL15A1	15	2	COL1A2	19624	chr7:94047143:+	COL15A1	54000	chr9:101797296:+	ONLY_REF_SPLICE	YES	5478	294	0	0.05	0.1361	0.0182	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL15A1->chr9:101705461-101833069:+,collagen_type_XV_alpha_1	RS5_FIBROBLAST	0	0.05	0.1543	TRUE	0	0	0	1	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--FN1	4	43	COL1A1	15399	chr17:48264376:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	10875	12504	0	0	0.0363	0.3903	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	RS5_FIBROBLAST	0	0	0.4266	TRUE	0	0	0	10	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	9	18	COL1A1	8457	chr17:48271318:-	COL4A1	46681	chr13:110830530:-	INCL_NON_REF_SPLICE	YES	11960	1663	0	0.02	0.0817	0.1634	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.02	0.2451	TRUE	0	0	0	3	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	1	47	COL1A1	11597	chr17:48268178:-	COL4A1	29962	chr13:110859836:-	ONLY_REF_SPLICE	YES	10625	1426	0	0.03	0.0091	0.4266	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.03	0.4357	TRUE	0	0	0	2	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	5	31	COL1A1	8030	chr17:48271745:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	NO	11008	1823	0	0.02	0.0454	0.2813	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.02	0.3267	FALSE	0	0	0	4	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	11	6	COL1A1	9774	chr17:48270001:-	COL4A1	54027	chr13:110822002:-	INCL_NON_REF_SPLICE	NO	11272	1792	0	0.01	0.0998	0.0545	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.01	0.1543	FALSE	0	0	0	3	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A2--COL15A1	12	2	COL1A2	29040	chr7:94056559:+	COL15A1	51538	chr9:101787252:+	INCL_NON_REF_SPLICE	NO	7795	317	0	0.04	0.1089	0.0182	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL15A1->chr9:101705461-101833069:+,collagen_type_XV_alpha_1	RS5_FIBROBLAST	0	0.04	0.1271	FALSE	0	0	0	1	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	4	33	COL1A1	8463	chr17:48271312:-	COL4A1	35735	chr13:110850927:-	INCL_NON_REF_SPLICE	YES	11971	1992	0	0.02	0.0363	0.2995	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.02	0.3358	TRUE	0	0	0	2	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--FN1	3	37	COL1A1	13512	chr17:48266263:-	FN1	60268	chr2:216241291:-	INCL_NON_REF_SPLICE	NO	10468	10401	0	0	0.0272	0.3358	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	RS5_FIBROBLAST	0	0	0.363	FALSE	0	0	0	1	0	FALSE	ACH-000531
RS5_FIBROBLAST	CTD-2337A12.1--CAST	12	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	46	1	0.22	0.1089	0.0091	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	RS5_FIBROBLAST	0.22	1	0.118	TRUE	347	1186	183	220	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--FN1	3	36	COL1A1	14920	chr17:48264855:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	9896	12504	0	0	0.0272	0.3267	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	RS5_FIBROBLAST	0	0	0.3539	TRUE	0	0	0	10	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A2--TMED9	12	0	COL1A2	31189	chr7:94058708:+	TMED9	37553	chr5:177020686:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1089	0	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,TMED9->chr5:177019159-177023125:+,transmembrane_p24_trafficking_protein_9	RS5_FIBROBLAST	1	1	0.1089	TRUE	0	0	0	1	0	TRUE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	5	26	COL1A1	7129	chr17:48272646:-	COL4A1	35735	chr13:110850927:-	INCL_NON_REF_SPLICE	YES	12179	1992	0	0.02	0.0454	0.236	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.02	0.2814	TRUE	0	0	0	3	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--FN1	3	34	COL1A1	13456	chr17:48266319:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	10145	12504	0	0	0.0272	0.3086	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	RS5_FIBROBLAST	0	0	0.3358	TRUE	0	0	0	16	0	FALSE	ACH-000531
RS5_FIBROBLAST	RP11-444D3.1--SOX5	10	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0908	0.0545	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	RS5_FIBROBLAST	1	1	0.1453	TRUE	477	1352	189	275	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	6	21	COL1A1	7367	chr17:48272408:-	COL4A1	41116	chr13:110839676:-	ONLY_REF_SPLICE	YES	12247	2001	0	0.01	0.0545	0.1906	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.01	0.2451	TRUE	0	0	0	2	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	4	28	COL1A1	11005	chr17:48268770:-	COL4A1	43100	chr13:110835584:-	INCL_NON_REF_SPLICE	NO	9518	2566	0	0.01	0.0363	0.2541	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.01	0.2904	FALSE	0	0	0	1	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	7	16	COL1A1	15337	chr17:48264438:-	COL4A1	57053	chr13:110817337:-	INCL_NON_REF_SPLICE	YES	10776	2286	0	0.01	0.0635	0.1452	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.01	0.2087	TRUE	0	0	0	1	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--FN1	3	31	COL1A1	7685	chr17:48272090:-	FN1	22275	chr2:216300746:-	INCL_NON_REF_SPLICE	YES	9404	4	0	0.89	0.0272	0.2813	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	RS5_FIBROBLAST	0	0.89	0.3085	TRUE	0	0	0	13	0	FALSE	ACH-000531
RS5_FIBROBLAST	FN1--COL1A1	8	10	FN1	18663	chr2:216272012:-	COL1A1	64011	chr17:48269699:-	INCL_NON_REF_SPLICE	NO	8941	11073	0	0	0.0726	0.0908	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	RS5_FIBROBLAST	0	0	0.1634	FALSE	0	0	0	3	0	FALSE	ACH-000531
RS5_FIBROBLAST	PRR16--CTD-2334D19.1	10	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	51	0	0.19	1	0.0908	0.0182	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	RS5_FIBROBLAST	0.19	1	0.109	FALSE	56	216	12	147	0	FALSE	ACH-000531
RS5_FIBROBLAST	NIPA2--POLA1	10	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0908	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	RS5_FIBROBLAST	1	1	0.0908	TRUE	46	1352	75	139	0	FALSE	ACH-000531
RS5_FIBROBLAST	MT-ND6--MT-TE	9	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0817	0.0272	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS5_FIBROBLAST	1	1	0.1089	FALSE	499	1288	110	792	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	7	10	COL1A1	5780	chr17:48273995:-	COL4A1	32992	chr13:110855935:-	INCL_NON_REF_SPLICE	YES	10218	1823	0	0.01	0.0635	0.0908	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.01	0.1543	TRUE	0	0	0	4	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	8	6	COL1A1	10618	chr17:48269157:-	COL4A1	55082	chr13:110819549:-	INCL_NON_REF_SPLICE	NO	9955	1596	0	0.01	0.0726	0.0545	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.01	0.1271	FALSE	0	0	0	2	0	FALSE	ACH-000531
RS5_FIBROBLAST	TPM2--IGFBP3	9	2	TPM2	4191	chr9:35685462:-	IGFBP3	11289	chr7:45960849:-	INCL_NON_REF_SPLICE	YES	5631	2	0	0.85	0.0817	0.0182	TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),IGFBP3->Oncogene{Bushman},chr7:45951949-45961473:-,insulin_like_growth_factor_binding_protein_3	RS5_FIBROBLAST	0	0.85	0.0999	FALSE	0	0	0	1	0	FALSE	ACH-000531
RS5_FIBROBLAST	MT-ND6--MT-TE	3	22	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	7	0	0.78	1	0.0272	0.1997	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS5_FIBROBLAST	0.78	1	0.2269	FALSE	499	1288	110	792	0	FALSE	ACH-000531
RS5_FIBROBLAST	MT-TA--MT-TC	7	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0635	0.0545	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RS5_FIBROBLAST	1	1	0.118	FALSE	462	80	0	856	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	1	29	COL1A1	7182	chr17:48272593:-	COL4A1	28920	chr13:110861237:-	ONLY_REF_SPLICE	YES	12923	1750	0	0.02	0.0091	0.2632	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.02	0.2723	TRUE	0	0	0	1	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	3	21	COL1A1	13822	chr17:48265953:-	COL4A1	50800	chr13:110826345:-	INCL_NON_REF_SPLICE	YES	8611	2301	0	0.01	0.0272	0.1906	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.01	0.2178	TRUE	0	0	0	3	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	4	14	COL1A1	12975	chr17:48266800:-	COL4A1	50800	chr13:110826345:-	INCL_NON_REF_SPLICE	YES	11016	2301	0	0.01	0.0363	0.1271	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.01	0.1634	TRUE	0	0	0	3	0	FALSE	ACH-000531
RS5_FIBROBLAST	NRIP1--AF127936.7	7	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0635	0.0182	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RS5_FIBROBLAST	0.9	1	0.0817	FALSE	292	1546	117	613	0	FALSE	ACH-000531
RS5_FIBROBLAST	MT-CO1--TPM2	7	1	MT-CO1	1594	chrM:6497:+	TPM2	6633	chr9:35689927:-	INCL_NON_REF_SPLICE	YES	15445	7	0	0.53	0.0635	0.0091	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	RS5_FIBROBLAST	0	0.53	0.0726	FALSE	0	0	0	1	0	FALSE	ACH-000531
RS5_FIBROBLAST	MT-ND6--MT-TE	3	16	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0272	0.1452	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS5_FIBROBLAST	0.9	1	0.1724	FALSE	499	1288	110	792	0	FALSE	ACH-000531
RS5_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	7	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0635	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RS5_FIBROBLAST	1	1	0.0635	FALSE	515	4851	409	746	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--FN1	3	15	COL1A1	7831	chr17:48271944:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	10041	12504	0	0	0.0272	0.1361	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	RS5_FIBROBLAST	0	0	0.1633	TRUE	0	0	0	14	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	5	6	COL1A1	5922	chr17:48273853:-	COL4A1	49531	chr13:110827614:-	INCL_NON_REF_SPLICE	YES	10086	1972	0	0.01	0.0454	0.0545	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.01	0.0999	FALSE	0	0	0	2	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--FN1	4	10	COL1A1	15751	chr17:48264024:-	FN1	65284	chr2:216235130:-	INCL_NON_REF_SPLICE	YES	10372	14353	0	0	0.0363	0.0908	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	RS5_FIBROBLAST	0	0	0.1271	TRUE	0	0	0	7	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	3	13	COL1A1	7691	chr17:48272084:-	COL4A1	45561	chr13:110831650:-	INCL_NON_REF_SPLICE	NO	9843	1665	0	0.01	0.0272	0.118	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.01	0.1452	FALSE	0	0	0	4	0	FALSE	ACH-000531
RS5_FIBROBLAST	MT-ND6--MT-TE	6	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0545	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS5_FIBROBLAST	1	1	0.0545	FALSE	499	1288	110	792	0	FALSE	ACH-000531
RS5_FIBROBLAST	ZNF654--HMGB2	6	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0545	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RS5_FIBROBLAST	1	1	0.0545	TRUE	0	0	0	518	0	FALSE	ACH-000531
RS5_FIBROBLAST	MT-TA--MT-TC	4	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0.0635	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RS5_FIBROBLAST	1	1	0.0998	FALSE	462	80	0	856	0	FALSE	ACH-000531
RS5_FIBROBLAST	HSP90AB1--MT-RNR2	5	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1015	0	0.01	1	0.0454	0.0091	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RS5_FIBROBLAST	0.01	1	0.0545	FALSE	13	9	0	364	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	2	12	COL1A1	8471	chr17:48271304:-	COL4A1	50049	chr13:110827096:-	ONLY_REF_SPLICE	YES	12205	1793	0	0.01	0.0182	0.1089	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.01	0.1271	TRUE	0	0	0	2	0	FALSE	ACH-000531
RS5_FIBROBLAST	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0454	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RS5_FIBROBLAST	1	1	0.0454	FALSE	13	9	0	364	0	FALSE	ACH-000531
RS5_FIBROBLAST	MYL9--MT-CO3	5	0	MYL9	4936	chr20:35178082:+	MT-CO3	8154	chrM:9278:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0454	0	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	RS5_FIBROBLAST	1	1	0.0454	FALSE	29	0	0	10	0	FALSE	ACH-000531
RS5_FIBROBLAST	ZNF736--CHMP1A	5	0	ZNF736	8361	chr7:63797360:+	CHMP1A	24290	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0454	0	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adipose_Tissue=[count:2=pct:0.7],Breast=[count:2=pct:1.8],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=25;pct=0.29%;dist=Thyroid=4,Cells_-_Transformed_fibroblasts=3,Breast_-_Mammary_Tissue=2,Esophagus_-_Mucosa=2,Ovary=1,Pancreas=1,Lung=1,Vagina=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Colon_-_Sigmoid=1,Testis=1,Colon_-_Transverse=1},ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	RS5_FIBROBLAST	1	1	0.0454	TRUE	10	14	2	10	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL8A1--CMSS1	4	3	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	784	67	0.01	0.09	0.0363	0.0272	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	RS5_FIBROBLAST	0.01	0.09	0.0635	FALSE	76	19	3	26	0	FALSE	ACH-000531
RS5_FIBROBLAST	ACTB--ITGB1	4	1	ACTB	6543	chr7:5568105:-	ITGB1	16825	chr10:33247141:-	INCL_NON_REF_SPLICE	YES	8679	3	0	0.62	0.0363	0.0091	ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-,ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1	RS5_FIBROBLAST	0	0.62	0.0454	FALSE	0	0	0	1	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL1A1--COL4A1	2	9	COL1A1	5404	chr17:48274371:-	COL4A1	25626	chr13:110864965:-	ONLY_REF_SPLICE	YES	8998	1676	0	0.01	0.0182	0.0817	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	RS5_FIBROBLAST	0	0.01	0.0999	FALSE	0	0	0	1	0	FALSE	ACH-000531
RS5_FIBROBLAST	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0.0091	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RS5_FIBROBLAST	1	1	0.0454	FALSE	462	80	0	856	0	FALSE	ACH-000531
RS5_FIBROBLAST	IGFBP7--MT-ND4L	4	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RS5_FIBROBLAST	1	1	0.0363	FALSE	1	0	0	30	0	FALSE	ACH-000531
RS5_FIBROBLAST	MYL9--MT-CO3	4	0	MYL9	4577	chr20:35177723:+	MT-CO3	8119	chrM:9243:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	RS5_FIBROBLAST	1	1	0.0363	FALSE	29	0	0	10	0	FALSE	ACH-000531
RS5_FIBROBLAST	NRIP1--AF127936.7	3	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.5	1	0.0272	0.0363	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RS5_FIBROBLAST	0.5	1	0.0635	FALSE	164	806	69	479	0	FALSE	ACH-000531
RS5_FIBROBLAST	PLXDC1--TAF13	3	2	PLXDC1	27520	chr17:37222840:-	TAF13	38540	chr1:109605627:-	INCL_NON_REF_SPLICE	YES	1	105	0.83	0.05	0.0272	0.0182	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	RS5_FIBROBLAST	0.05	0.83	0.0454	TRUE	7	10	0	216	0	FALSE	ACH-000531
RS5_FIBROBLAST	RP11-444D3.1--SOX5	3	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0.0182	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	RS5_FIBROBLAST	1	1	0.0454	TRUE	274	363	69	150	0	FALSE	ACH-000531
RS5_FIBROBLAST	FTH1--ACTB	3	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	2810	0	0	1	0.0272	0.0091	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	RS5_FIBROBLAST	0	1	0.0363	FALSE	1	0	0	97	0	FALSE	ACH-000531
RS5_FIBROBLAST	MT-ND6--MT-TE	3	1	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0.0091	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RS5_FIBROBLAST	1	1	0.0363	FALSE	499	1288	110	792	0	FALSE	ACH-000531
RS5_FIBROBLAST	TIMP1--TPM2	3	1	TIMP1	4901	chrX:47446011:+	TPM2	9172	chr9:35689924:-	INCL_NON_REF_SPLICE	YES	1851	7	0	0.36	0.0272	0.0091	TIMP1->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_1,chrX:47441712-47446188:+,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	RS5_FIBROBLAST	0	0.36	0.0363	FALSE	0	0	0	1	0	FALSE	ACH-000531
RS5_FIBROBLAST	TPM2--IGFBP3	3	1	TPM2	4206	chr9:35685447:-	IGFBP3	11302	chr7:45960836:-	INCL_NON_REF_SPLICE	YES	5574	1	0	0.8	0.0272	0.0091	TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),IGFBP3->Oncogene{Bushman},chr7:45951949-45961473:-,insulin_like_growth_factor_binding_protein_3	RS5_FIBROBLAST	0	0.8	0.0363	FALSE	0	0	0	1	0	FALSE	ACH-000531
RS5_FIBROBLAST	MYL9--MT-CO3	3	0	MYL9	4581	chr20:35177727:+	MT-CO3	8123	chrM:9247:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	RS5_FIBROBLAST	1	1	0.0272	FALSE	29	0	0	10	0	FALSE	ACH-000531
RS5_FIBROBLAST	MYL9--MT-CO3	3	0	MYL9	4964	chr20:35178110:+	MT-CO3	8177	chrM:9301:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	RS5_FIBROBLAST	1	1	0.0272	FALSE	29	0	0	10	0	FALSE	ACH-000531
RS5_FIBROBLAST	NDC80--HIF1A	3	0	NDC80	4483	chr18:2577356:+	HIF1A	39781	chr14:62211423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_FI:{Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Cells_-_Transformed_fibroblasts=4,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Lung=1,Artery_-_Coronary=1,Esophagus_-_Muscularis=1},NDC80->NDC80_kinetochore_complex_component,chr18:2571510-2616634:+,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	RS5_FIBROBLAST	1	1	0.0272	TRUE	2	27	1	8	0	FALSE	ACH-000531
RS5_FIBROBLAST	RP11-358H9.1--RP11-400N13.1	3	0	RP11-358H9.1	2827	chr1:222626082:-	RP11-400N13.1	9106	chr1:222262907:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NEIGHBORS[65306],RP11-358H9.1->chr1:222626082-222628047:-,RP11-400N13.1->chr1:222262511-222560776:-	RS5_FIBROBLAST	1	1	0.0272	FALSE	0	22	0	9	0	FALSE	ACH-000531
RS5_FIBROBLAST	SLC1A5--MT-ND4L	3	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RS5_FIBROBLAST	1	1	0.0272	FALSE	0	0	0	189	0	FALSE	ACH-000531
RS5_FIBROBLAST	KANSL1--ARL17B	1	7	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	10	10	0.44	0.44	0.0091	0.0635	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	RS5_FIBROBLAST	0.44	0.44	0.0726	TRUE	20	16	0	28	0	FALSE	ACH-000531
RS5_FIBROBLAST	COL8A1--CMSS1	2	1	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	799	67	0	0.04	0.0182	0.0091	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	RS5_FIBROBLAST	0	0.04	0.0273	FALSE	38	10	2	29	0	FALSE	ACH-000531
RS5_FIBROBLAST	UBL3--SLC7A1	2	1	UBL3	2173	chr13:30423649:-	SLC7A1	14036	chr13:30127997:-	ONLY_REF_SPLICE	YES	143	12	0.02	0.2	0.0182	0.0091	UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	RS5_FIBROBLAST	0.02	0.2	0.0273	TRUE	1	5	0	8	1	FALSE	ACH-000531
RS5_FIBROBLAST	CCDC50--HABP4	2	0	CCDC50	5893	chr3:191087825:+	HABP4	23986	chr9:99220661:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	CCDC50->chr3:191046866-191116459:+,coiled-coil_domain_containing_50,HABP4->chr9:99212483-99253618:+,hyaluronan_binding_protein_4	RS5_FIBROBLAST	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000531
RS5_FIBROBLAST	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	23932	chr5:96058343:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	RS5_FIBROBLAST	1	1	0.0182	TRUE	2	9	1	4	0	FALSE	ACH-000531
RS5_FIBROBLAST	MAP4--PLXNB1	2	0	MAP4	1507	chr3:48130263:-	PLXNB1	51924	chr3:48456450:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,PLXNB1->Oncogene{Bushman},chr3:48445261-48471594:-,plexin_B1	RS5_FIBROBLAST	1	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000531
RS5_FIBROBLAST	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	RS5_FIBROBLAST	1	1	0.0182	FALSE	46	201	11	112	0	FALSE	ACH-000531
RS5_FIBROBLAST	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	1071	chr5:96519373:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	RS5_FIBROBLAST	1	1	0.0182	FALSE	1	1	0	4	0	FALSE	ACH-000531
RS5_FIBROBLAST	YIPF6--BAZ1B	2	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0182	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	RS5_FIBROBLAST	1	1	0.0182	TRUE	1	23	1	24	8	FALSE	ACH-000531
RS5_FIBROBLAST	NRIP1--AF127936.7	1	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.31	1	0.0091	0.0272	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RS5_FIBROBLAST	0.31	1	0.0363	FALSE	125	705	46	456	0	FALSE	ACH-000531
RS5_FIBROBLAST	FLNA--MYL9	1	2	FLNA	16147	chrX:153582519:-	MYL9	25853	chr20:35173262:+	ONLY_REF_SPLICE	YES	2320	18	0	0.14	0.0091	0.0182	GTEx&tcga_normals:305/3694=8.26%,GTEx:7.07%,GTEx_FI:{Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},GTEx_v2:{count=6;pct=0.07%;dist=Esophagus_-_Gastroesophageal_Junction=2,Colon_-_Sigmoid=2,Stomach=1,Artery_-_Coronary=1},FLNA->chrX:153576892-153603006:-,filamin_A,MYL9->chr20:35169887-35178228:+,myosin_light_chain_9	RS5_FIBROBLAST	0	0.14	0.0273	FALSE	3	0	0	1	0	FALSE	ACH-000531
RS5_FIBROBLAST	ALMS1--APOLD1	1	1	ALMS1	3757	chr2:73646446:+	APOLD1	56118	chr12:12978934:+	ONLY_REF_SPLICE	NO	3	117	0.4	0.02	0.0091	0.0091	ALMS1->ALMS1,_centrosome_and_basal_body_associated_protein,chr2:73612886-73837920:+,APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+	RS5_FIBROBLAST	0.02	0.4	0.0182	TRUE	0	0	0	1	0	FALSE	ACH-000531
RS5_FIBROBLAST	CCNJ--PDLIM1	1	1	CCNJ	2069	chr10:97804219:+	PDLIM1	17717	chr10:97007123:-	ONLY_REF_SPLICE	NO	2	340	0.5	0.01	0.0091	0.0091	CCNJ->chr10:97803151-97820627:+,cyclin_J,PDLIM1->PDZ_and_LIM_domain_1,chr10:96997329-97050781:-	RS5_FIBROBLAST	0.01	0.5	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000531
FUOV1_OVARY	MATR3--UBE2D2	542	60	MATR3	9772	chr5:138629494:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	58	46	0.91	0.93	7.1404	0.7904	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.91	0.93	7.9308	TRUE	0	3	0	1	3	TRUE	ACH-000574
FUOV1_OVARY	TPM1--TLN2	158	110	TPM1	11679	chr15:63354844:+	TLN2	83514	chr15:63097799:+	ONLY_REF_SPLICE	YES	842	26	0.24	0.91	2.0815	1.4491	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha),TLN2->chr15:62682725-63136830:+,talin_2	FUOV1_OVARY	0.24	0.91	3.5306	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	61	114	TECPR1	1858	chr7:97880706:-	OCM2	30927	chr7:97617860:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.8036	1.5018	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	1	1	2.3054	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	GGA3--LINC00969	71	51	GGA3	8591	chr17:73237481:-	LINC00969	51115	chr3:195451551:+	ONLY_REF_SPLICE	YES	90	4	0.58	0.97	0.9354	0.6719	GGA3->chr17:73232694-73258444:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_3,LINC00969->chr3:195384933-195460422:+,long_intergenic_non-protein_coding_RNA_969	FUOV1_OVARY	0.58	0.97	1.6073	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TIMM23B--LINC00843	73	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9617	0.3689	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	FUOV1_OVARY	0.99	1	1.3306	TRUE	508	994	45	981	0	FALSE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	44	131	TECPR1	1858	chr7:97880706:-	OCM2	29859	chr7:97619423:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5797	1.7258	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	1	1	2.3055	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	37	109	TECPR1	1833	chr7:97880731:-	OCM2	30927	chr7:97617860:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4874	1.436	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	1	1	1.9234	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	38	66	MATR3	9995	chr5:138629717:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	70	46	0.6	0.69	0.5006	0.8695	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.6	0.69	1.3701	TRUE	0	3	0	1	3	TRUE	ACH-000574
FUOV1_OVARY	TIMM23--RP11-464F9.1	45	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	302	3	0.14	0.94	0.5928	0.0395	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	FUOV1_OVARY	0.14	0.94	0.6323	TRUE	519	3926	326	965	0	FALSE	ACH-000574
FUOV1_OVARY	RERE--CLSTN1	42	3	RERE	5242	chr1:8763114:-	CLSTN1	49076	chr1:9804701:-	ONLY_REF_SPLICE	YES	8	371	0.85	0.11	0.5533	0.0395	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,CLSTN1->calsyntenin_1,chr1:9789084-9884584:-	FUOV1_OVARY	0.11	0.85	0.5928	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	38	18	MATR3	4523	chr5:138614818:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	120	46	0.32	0.55	0.5006	0.2371	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.32	0.55	0.7377	TRUE	0	1	0	2	1	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	11	126	TECPR1	1833	chr7:97880731:-	OCM2	29859	chr7:97619423:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1449	1.6599	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	1	1	1.8048	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TPM1--TLN2	22	73	TPM1	11311	chr15:63354476:+	TLN2	83514	chr15:63097799:+	ONLY_REF_SPLICE	YES	941	26	0.09	0.79	0.2898	0.9617	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha),TLN2->chr15:62682725-63136830:+,talin_2	FUOV1_OVARY	0.09	0.79	1.2515	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	19	84	TECPR1	1858	chr7:97880706:-	OCM2	30962	chr7:97617825:-	INCL_NON_REF_SPLICE	YES	0	3	1	0.97	0.2503	1.1066	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	0.97	1	1.3569	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	19	48	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	7139	0	0.01	1	0.2503	0.6324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.01	1	0.8827	FALSE	344	827	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND6--MT-TE	27	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.3557	0.1054	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FUOV1_OVARY	0.92	1	0.4611	FALSE	499	1288	110	792	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND6--MT-ND5	25	8	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	4149	1	0.01	0.3294	0.1054	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	FUOV1_OVARY	0.01	1	0.4348	FALSE	101	855	57	72	0	FALSE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	6	82	TECPR1	1833	chr7:97880731:-	OCM2	30962	chr7:97617825:-	INCL_NON_REF_SPLICE	YES	0	3	1	0.97	0.079	1.0803	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	0.97	1	1.1593	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	19	26	MT-CO3	1138	chrM:9344:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	4	4	0.92	0.92	0.2503	0.3425	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	0.92	0.92	0.5928	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND6--MT-TE	24	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3162	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FUOV1_OVARY	1	1	0.3162	FALSE	499	1288	110	792	0	FALSE	ACH-000574
FUOV1_OVARY	RP11-512M8.5--SYNE1	19	16	RP11-512M8.5	1117	chr12:122750854:-	SYNE1	186902	chr6:152456367:-	ONLY_REF_SPLICE	YES	70	12	0.33	0.74	0.2503	0.2108	RP11-512M8.5->chr12:122692326-122750970:-,SYNE1->Oncogene{Bushman},chr6:152442819-152958936:-,spectrin_repeat_containing_nuclear_envelope_protein_1	FUOV1_OVARY	0.33	0.74	0.4611	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-TA--MT-TC	22	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2898	0.0263	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	FUOV1_OVARY	1	1	0.3161	FALSE	462	80	0	856	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	6	64	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	21	1	0.77	0.99	0.079	0.8431	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.77	0.99	0.9221	FALSE	344	826	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	4	69	MATR3	10067	chr5:138629789:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	72	46	0.5	0.61	0.0527	0.909	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.5	0.61	0.9617	TRUE	0	3	0	1	3	TRUE	ACH-000574
FUOV1_OVARY	MROH1--DGAT1	20	0	MROH1	1061	chr8:145202979:+	DGAT1	42724	chr8:145545071:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2635	0	MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1,DGAT1->chr8:145539954-145550573:-,diacylglycerol_O-acyltransferase_1	FUOV1_OVARY	1	1	0.2635	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	4	63	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	19	0	0.78	1	0.0527	0.83	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.78	1	0.8827	FALSE	344	826	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	4	63	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	14	0	0.83	1	0.0527	0.83	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.83	1	0.8827	FALSE	344	826	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	3	64	MT-ND4	1170	chrM:10929:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	YES	31	1	0.68	0.99	0.0395	0.8431	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.68	0.99	0.8826	FALSE	344	826	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	3	64	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	35	0	0.66	1	0.0395	0.8431	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.66	1	0.8826	FALSE	344	826	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	13	23	MATR3	9542	chr5:138629264:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	35	46	0.51	0.44	0.1713	0.303	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.44	0.51	0.4743	TRUE	0	3	0	1	3	TRUE	ACH-000574
FUOV1_OVARY	GGA3--LINC00969	3	61	GGA3	8591	chr17:73237481:-	LINC00969	49978	chr3:195449552:+	INCL_NON_REF_SPLICE	YES	90	0	0.42	1	0.0395	0.8036	GGA3->chr17:73232694-73258444:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_3,LINC00969->chr3:195384933-195460422:+,long_intergenic_non-protein_coding_RNA_969	FUOV1_OVARY	0.42	1	0.8431	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	11	26	MATR3	9739	chr5:138629461:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	37	46	0.5	0.45	0.1449	0.3425	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.45	0.5	0.4874	TRUE	0	3	0	1	3	TRUE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	3	57	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	9	0	0.87	1	0.0395	0.7509	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.87	1	0.7904	FALSE	344	826	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	HMGCR--RIMS2	15	8	HMGCR	11111	chr5:74646774:+	RIMS2	23678	chr8:104709314:+	ONLY_REF_SPLICE	YES	127	1	0.15	0.96	0.1976	0.1054	HMGCR->3-hydroxy-3-methylglutaryl-CoA_reductase,Oncogene{Bushman},chr5:74632154-74657929:+,RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2	FUOV1_OVARY	0.15	0.96	0.303	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	5	46	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	9	1	0.85	0.98	0.0659	0.606	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.85	0.98	0.6719	FALSE	344	821	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ATP8	16	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2108	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FUOV1_OVARY	1	1	0.2108	FALSE	230	193	14	283	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND6--MT-TE	16	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2108	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FUOV1_OVARY	1	1	0.2108	FALSE	499	1288	110	792	0	FALSE	ACH-000574
FUOV1_OVARY	RERE--CLSTN1	14	2	RERE	1484	chr1:8877219:-	CLSTN1	49076	chr1:9804701:-	ONLY_REF_SPLICE	YES	4	371	0.8	0.04	0.1844	0.0263	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,CLSTN1->calsyntenin_1,chr1:9789084-9884584:-	FUOV1_OVARY	0.04	0.8	0.2107	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	4	41	TECPR1	1833	chr7:97880731:-	OCM2	32060	chr7:97616468:-	ONLY_REF_SPLICE	YES	0	44	1	0.51	0.0527	0.5401	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	0.51	1	0.5928	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	7	26	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	7	0.89	0.82	0.0922	0.3425	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	0.82	0.89	0.4347	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	8	21	PLEC	3358	chr8:145047571:-	LINC00669	44658	chr18:36907915:-	ONLY_REF_SPLICE	YES	100	2	0.22	0.94	0.1054	0.2767	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.22	0.94	0.3821	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	2	44	MATR3	9772	chr5:138629494:+	UBE2D2	38294	chr5:138994171:+	ONLY_REF_SPLICE	YES	58	127	0.44	0.27	0.0263	0.5797	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.27	0.44	0.606	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	7	24	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	3	0.97	0.91	0.0922	0.3162	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	0.91	0.97	0.4084	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	SLC1A5--MT-ND4L	11	3	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	406	0	0.03	1	0.1449	0.0395	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.03	1	0.1844	FALSE	0	0	0	189	0	FALSE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	1	43	TECPR1	1858	chr7:97880706:-	OCM2	32060	chr7:97616468:-	ONLY_REF_SPLICE	YES	0	44	1	0.5	0.0132	0.5665	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	0.5	1	0.5797	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	10	6	TECPR1	1126	chr7:97881438:-	OCM2	30927	chr7:97617860:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1317	0.079	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	0.94	1	0.2107	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	5	24	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	4	0.97	0.88	0.0659	0.3162	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	0.88	0.97	0.3821	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	4	27	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	7	0.89	0.82	0.0527	0.3557	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	0.82	0.89	0.4084	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	9	6	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	1	1	0.94	0.94	0.1186	0.079	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	0.94	0.94	0.1976	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	4	26	MT-CO3	1126	chrM:9332:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	3	4	0.91	0.88	0.0527	0.3425	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	0.88	0.91	0.3952	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND6--MT-TE	8	10	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.1054	0.1317	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FUOV1_OVARY	0.86	1	0.2371	FALSE	499	1288	110	792	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	8	9	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	13038	0	0	1	0.1054	0.1186	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0	1	0.224	FALSE	328	800	43	304	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	8	9	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	844	0	0.02	1	0.1054	0.1186	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.02	1	0.224	FALSE	344	827	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ATP8	10	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1317	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FUOV1_OVARY	1	1	0.1317	FALSE	230	198	14	283	0	FALSE	ACH-000574
FUOV1_OVARY	SLC13A3--RILPL2	9	4	SLC13A3	17079	chr20:45212211:-	RILPL2	31431	chr12:123900468:-	ONLY_REF_SPLICE	YES	4	29	0.76	0.31	0.1186	0.0527	SLC13A3->chr20:45186463-45304714:-,solute_carrier_family_13_member_3,RILPL2->Rab_interacting_lysosomal_protein_like_2,chr12:123899936-123921264:-	FUOV1_OVARY	0.31	0.76	0.1713	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	9	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	4	0	0.75	1	0.1186	0.0395	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	0.75	1	0.1581	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	5	18	MATR3	7316	chr5:138619290:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	42	46	0.35	0.33	0.0659	0.2371	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.33	0.35	0.303	TRUE	0	1	0	1	1	TRUE	ACH-000574
FUOV1_OVARY	RP11-123O10.4--GRIP1	9	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1186	0.0263	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	FUOV1_OVARY	1	1	0.1449	FALSE	416	2512	207	587	0	FALSE	ACH-000574
FUOV1_OVARY	DTNB--HADHA	8	5	DTNB	15974	chr2:25754342:-	HADHA	50915	chr2:26427065:-	ONLY_REF_SPLICE	YES	28	412	0.32	0.03	0.1054	0.0659	DTNB->chr2:25600067-25896503:-,dystrobrevin_beta,HADHA->chr2:26413504-26467594:-,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_alpha_subunit	FUOV1_OVARY	0.03	0.32	0.1713	TRUE	0	0	0	1	0	FALSE	ACH-000574
FUOV1_OVARY	FBXL2--CMTM8	8	5	FBXL2	14579	chr3:33416910:+	CMTM8	29254	chr3:32398865:+	ONLY_REF_SPLICE	YES	11	12	0.54	0.52	0.1054	0.0659	FBXL2->F-box_and_leucine-rich_repeat_protein_2,chr3:33318517-33445154:+,CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+	FUOV1_OVARY	0.52	0.54	0.1713	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	4	21	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	4	0.96	0.86	0.0527	0.2767	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	0.86	0.96	0.3294	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	3	24	MT-CO3	1083	chrM:9289:+	MT-ATP6	5173	chrM:8915:+	INCL_NON_REF_SPLICE	YES	0	41	1	0.4	0.0395	0.3162	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	0.4	1	0.3557	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	7	8	PLEC	2231	chr8:145049345:-	LINC00669	44658	chr18:36907915:-	ONLY_REF_SPLICE	YES	31	2	0.33	0.88	0.0922	0.1054	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.33	0.88	0.1976	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	7	7	TECPR1	1126	chr7:97881438:-	OCM2	29859	chr7:97619423:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0922	0.0922	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	0.93	1	0.1844	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	3	21	PLEC	5758	chr8:145027894:-	LINC00669	44658	chr18:36907915:-	ONLY_REF_SPLICE	YES	108	2	0.18	0.92	0.0395	0.2767	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.18	0.92	0.3162	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	GPRIN1--UVSSA	8	0	GPRIN1	1135	chr5:176037000:-	UVSSA	10036	chr4:1341878:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1054	0	GPRIN1->G_protein_regulated_inducer_of_neurite_outgrowth_1,chr5:176022803-176037134:-,UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+	FUOV1_OVARY	1	1	0.1054	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	6	7	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	1	0.93	0.93	0.079	0.0922	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	0.93	0.93	0.1712	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	MT-TA--MT-TC	7	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0922	0.0395	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	FUOV1_OVARY	1	1	0.1317	FALSE	462	80	0	856	0	FALSE	ACH-000574
FUOV1_OVARY	CDK5RAP1--DOCK3	6	6	CDK5RAP1	10249	chr20:31967267:-	DOCK3	26093	chr3:51101879:+	ONLY_REF_SPLICE	YES	176	13	0.06	0.48	0.079	0.079	CDK5RAP1->CDK5_regulatory_subunit_associated_protein_1,chr20:31946645-31989367:-,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	FUOV1_OVARY	0.06	0.48	0.158	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-ND6--MT-ND5	6	5	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	2193	1	0	0.079	0.0659	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	FUOV1_OVARY	0	1	0.1449	FALSE	101	855	57	72	0	FALSE	ACH-000574
FUOV1_OVARY	RP11-680G10.1--GSE1	7	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	18	1	0.31	0.0922	0.0132	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	FUOV1_OVARY	0.31	1	0.1054	TRUE	465	1949	224	605	0	FALSE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	4	10	PLEC	3358	chr8:145047571:-	LINC00669	46986	chr18:36788753:-	ONLY_REF_SPLICE	YES	100	2	0.12	0.88	0.0527	0.1317	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.12	0.88	0.1844	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	1	21	PLEC	12982	chr8:145013518:-	LINC00669	44658	chr18:36907915:-	ONLY_REF_SPLICE	NO	129	2	0.15	0.92	0.0132	0.2767	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.15	0.92	0.2899	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	1	21	PLEC	11741	chr8:145016560:-	LINC00669	44658	chr18:36907915:-	ONLY_REF_SPLICE	YES	116	2	0.16	0.92	0.0132	0.2767	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.16	0.92	0.2899	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	AP000525.9--LA16c-60G3.6	6	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.079	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	FUOV1_OVARY	1	1	0.079	TRUE	0	42	0	133	42	FALSE	ACH-000574
FUOV1_OVARY	MT-ATP6--MT-CO1	6	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.079	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	FUOV1_OVARY	1	1	0.079	FALSE	183	104	9	328	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ATP8	5	4	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	15405	175	0	0.05	0.0659	0.0527	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FUOV1_OVARY	0	0.05	0.1186	FALSE	231	217	16	283	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	4	8	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	34	0	0.26	1	0.0527	0.1054	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.26	1	0.1581	FALSE	344	826	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	PLCE1--SLC35G1	5	4	PLCE1	3840	chr10:95792009:+	SLC35G1	59505	chr10:95713766:+	ONLY_REF_SPLICE	YES	27	0	0.25	1	0.0659	0.0527	LOCAL_REARRANGEMENT:+:[37927],PLCE1->chr10:95753746-96092580:+,phospholipase_C_epsilon_1,SLC35G1->chr10:95653730-95715819:+,solute_carrier_family_35_member_G1	FUOV1_OVARY	0.25	1	0.1186	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	5	3	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	956	0	0.01	1	0.0659	0.0395	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.01	1	0.1054	FALSE	344	827	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	5	3	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	515	0	0.02	1	0.0659	0.0395	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.02	1	0.1054	FALSE	344	827	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND6--MT-TE	5	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0.0395	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FUOV1_OVARY	1	1	0.1054	FALSE	499	1288	110	792	0	FALSE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	1	18	MATR3	5452	chr5:138615747:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	NO	67	46	0.22	0.29	0.0132	0.2371	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	0.22	0.29	0.2503	TRUE	0	1	0	1	1	TRUE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	4	6	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	5	1	0.67	0.91	0.0527	0.079	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	0.67	0.91	0.1317	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ATP8	5	1	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17172	0	0	1	0.0659	0.0132	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FUOV1_OVARY	0	1	0.0791	FALSE	231	217	16	283	0	FALSE	ACH-000574
FUOV1_OVARY	MEST--MT-ND5	5	0	MEST	6890	chr7:130135274:+	MT-ND5	20016	chrM:13054:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0	MEST->chr7:130126012-130146133:+,mesoderm_specific_transcript,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	FUOV1_OVARY	1	1	0.0659	FALSE	0	0	0	3	0	FALSE	ACH-000574
FUOV1_OVARY	MROH1--SCRT1	5	0	MROH1	1061	chr8:145202979:+	SCRT1	42477	chr8:145557778:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0659	0	MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1,SCRT1->chr8:145554228-145559943:-,scratch_family_zinc_finger_1	FUOV1_OVARY	1	1	0.0659	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	5	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	1	1	0.0659	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	5	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	1	1	0.0659	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND6--MT-ND5	5	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	FUOV1_OVARY	1	1	0.0659	FALSE	101	855	57	72	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND6--MT-ND5	3	8	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	NO	0	3972	1	0	0.0395	0.1054	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	FUOV1_OVARY	0	1	0.1449	FALSE	101	855	57	72	0	FALSE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	3	7	MT-CO3	1092	chrM:9298:+	MT-ATP6	5414	chrM:9156:+	INCL_NON_REF_SPLICE	YES	1	1	0.91	0.91	0.0395	0.0922	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	0.91	0.91	0.1317	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	LYPD6B--KIF5C	4	2	LYPD6B	7317	chr2:149987467:+	KIF5C	26449	chr2:149679706:+	ONLY_REF_SPLICE	YES	3	24	0.67	0.2	0.0527	0.0263	LOCAL_REARRANGEMENT:+:[11348],LYPD6B->LY6/PLAUR_domain_containing_6B,chr2:149894621-150071776:+,KIF5C->chr2:149632819-149883273:+,kinesin_family_member_5C	FUOV1_OVARY	0.2	0.67	0.079	TRUE	0	0	0	2	0	TRUE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	4	2	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	5	0	0.55	1	0.0527	0.0263	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	0.55	1	0.079	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	3	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	4	1	0.69	0.9	0.0395	0.079	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	0.69	0.9	0.1185	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	MT-CO3--MT-ATP6	3	6	MT-CO3	1132	chrM:9338:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	3	1	0.75	0.9	0.0395	0.079	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	FUOV1_OVARY	0.75	0.9	0.1185	FALSE	189	492	56	216	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	4	2	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	31	0	0.16	1	0.0527	0.0263	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.16	1	0.079	FALSE	344	826	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND6--MT-ND5	4	2	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	5	2170	0.55	0	0.0527	0.0263	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	FUOV1_OVARY	0	0.55	0.079	FALSE	101	855	57	72	0	FALSE	ACH-000574
FUOV1_OVARY	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.38	0.0527	0.0263	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	FUOV1_OVARY	0.38	1	0.079	TRUE	458	1351	185	561	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ATP8	3	5	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15405	50	0	0.14	0.0395	0.0659	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FUOV1_OVARY	0	0.14	0.1054	FALSE	231	217	16	283	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	4	1	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	35	0	0.12	1	0.0527	0.0132	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.12	1	0.0659	FALSE	344	826	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	4	1	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	73	0	0.06	1	0.0527	0.0132	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.06	1	0.0659	FALSE	344	827	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND6--MT-ND5	4	1	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	702	1	0.01	0.0527	0.0132	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	FUOV1_OVARY	0.01	1	0.0659	FALSE	101	855	57	72	0	FALSE	ACH-000574
FUOV1_OVARY	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0527	0.0132	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	FUOV1_OVARY	1	1	0.0659	FALSE	292	1546	117	613	0	FALSE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	3	5	PLEC	2231	chr8:145049345:-	LINC00669	47736	chr18:36788003:-	INCL_NON_REF_SPLICE	YES	31	8	0.21	0.5	0.0395	0.0659	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.21	0.5	0.1054	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	DGAT1--MROH1	4	0	DGAT1	1474	chr8:145550100:-	MROH1	44560	chr8:145314814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0527	0	DGAT1->chr8:145539954-145550573:-,diacylglycerol_O-acyltransferase_1,MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1	FUOV1_OVARY	1	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	DOCK4--C7orf60	3	4	DOCK4	24592	chr7:111503428:-	C7orf60	67948	chr7:112472730:-	ONLY_REF_SPLICE	YES	4	22	0.64	0.24	0.0395	0.0527	DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,C7orf60->chr7:112459202-112579971:-	FUOV1_OVARY	0.24	0.64	0.0922	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MATR3--UBE2D2	4	0	MATR3	2720	chr5:138611839:+	UBE2D2	37230	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0527	0	MATR3->chr5:138609441-138667360:+,matrin_3,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	FUOV1_OVARY	1	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-ATP6--MT-CO1	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	4835	chrM:6057:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	FUOV1_OVARY	1	1	0.0527	FALSE	183	97	9	327	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ATP8	3	4	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	16940	0	0	1	0.0395	0.0527	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FUOV1_OVARY	0	1	0.0922	FALSE	231	217	16	283	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FUOV1_OVARY	1	1	0.0527	FALSE	499	1288	110	792	0	FALSE	ACH-000574
FUOV1_OVARY	MT-TA--MT-TC	3	4	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0.0527	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	FUOV1_OVARY	1	1	0.0922	FALSE	462	80	0	856	0	FALSE	ACH-000574
FUOV1_OVARY	MT-TA--MT-TC	3	4	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0.0527	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	FUOV1_OVARY	1	1	0.0922	FALSE	462	80	0	856	0	FALSE	ACH-000574
FUOV1_OVARY	MT-TA--MT-TC	3	4	MT-TA	1054	chrM:5602:-	MT-TC	4006	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0.0527	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	FUOV1_OVARY	1	1	0.0922	FALSE	462	80	0	856	0	FALSE	ACH-000574
FUOV1_OVARY	DYNC2H1--NADSYN1	3	3	DYNC2H1	85677	chr11:103229087:+	NADSYN1	106806	chr11:71184615:+	ONLY_REF_SPLICE	YES	35	54	0.15	0.1	0.0395	0.0395	DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1,NADSYN1->NAD_synthetase_1,chr11:71164155-71235153:+	FUOV1_OVARY	0.1	0.15	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-ATP6--MT-CO1	3	3	MT-ATP6	1537	chrM:9063:+	MT-CO1	5319	chrM:6541:+	INCL_NON_REF_SPLICE	YES	4027	17226	0	0	0.0395	0.0395	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	FUOV1_OVARY	0	0	0.079	FALSE	183	104	9	328	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	3	2	MT-ND4	1248	chrM:11007:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	40	0	0.11	1	0.0395	0.0263	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.11	1	0.0658	FALSE	344	827	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	3	2	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	34	0	0.13	1	0.0395	0.0263	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	0.13	1	0.0658	FALSE	344	826	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND6--MT-ND5	3	2	MT-ND6	1434	chrM:14240:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	6	2170	0.45	0	0.0395	0.0263	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	FUOV1_OVARY	0	0.45	0.0658	FALSE	101	855	57	72	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND6--MT-TE	3	2	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0395	0.0263	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	FUOV1_OVARY	0.62	1	0.0658	FALSE	499	1288	110	792	0	FALSE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	2	6	PLEC	2231	chr8:145049345:-	LINC00669	46986	chr18:36788753:-	ONLY_REF_SPLICE	YES	31	2	0.21	0.8	0.0263	0.079	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.21	0.8	0.1053	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	PLEC--LINC00669	1	10	PLEC	5758	chr8:145027894:-	LINC00669	46986	chr18:36788753:-	ONLY_REF_SPLICE	NO	108	2	0.09	0.85	0.0132	0.1317	PLEC->chr8:144989321-145050902:-,plectin,LINC00669->chr18:36786888-37380282:-	FUOV1_OVARY	0.09	0.85	0.1449	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	RERE--CLSTN1	3	2	RERE	2669	chr1:8852463:-	CLSTN1	49076	chr1:9804701:-	ONLY_REF_SPLICE	YES	5	371	0.5	0.01	0.0395	0.0263	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,CLSTN1->calsyntenin_1,chr1:9789084-9884584:-	FUOV1_OVARY	0.01	0.5	0.0658	FALSE	0	0	0	1	0	FALSE	ACH-000574
FUOV1_OVARY	ATF7--ITGA5	3	1	ATF7	15239	chr12:53910799:-	ITGA5	38810	chr12:54792482:-	ONLY_REF_SPLICE	YES	27	42	0.13	0.09	0.0395	0.0132	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,ITGA5->chr12:54789045-54813244:-,integrin_subunit_alpha_5	FUOV1_OVARY	0.09	0.13	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-ATP6--MT-ND1	3	1	MT-ATP6	1555	chrM:9081:+	MT-ND1	5165	chrM:3790:+	INCL_NON_REF_SPLICE	YES	3159	5196	0	0	0.0395	0.0132	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	FUOV1_OVARY	0	0	0.0527	FALSE	78	55	12	7	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	17172	0	0	1	0.0395	0.0132	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	FUOV1_OVARY	0	1	0.0527	FALSE	231	217	16	283	0	FALSE	ACH-000574
FUOV1_OVARY	CDK5RAP2--STOM	3	0	CDK5RAP2	14744	chr9:123280705:-	STOM	53699	chr9:124116951:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0395	0	CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,STOM->chr9:124101355-124132531:-,stomatin	FUOV1_OVARY	1	1	0.0395	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	DGAT1--MROH1	3	0	DGAT1	1474	chr8:145550100:-	MROH1	45326	chr8:145315580:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0395	0	DGAT1->chr8:145539954-145550573:-,diacylglycerol_O-acyltransferase_1,MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1	FUOV1_OVARY	1	1	0.0395	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MLKL--KARS	3	0	MLKL	1508	chr16:74734351:-	KARS	21493	chr16:75675621:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0395	0	MLKL->chr16:74705753-74734858:-,mixed_lineage_kinase_domain-like,KARS->chr16:75661622-75682541:-,lysyl-tRNA_synthetase	FUOV1_OVARY	1	1	0.0395	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	FUOV1_OVARY	1	1	0.0395	FALSE	183	104	9	328	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1098	chrM:8624:+	MT-CO1	4998	chrM:6220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	FUOV1_OVARY	1	1	0.0395	FALSE	183	104	9	328	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1133	chrM:8659:+	MT-CO1	5176	chrM:6398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	FUOV1_OVARY	1	1	0.0395	FALSE	183	104	9	328	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ATP6--MT-ND1	3	0	MT-ATP6	1126	chrM:8652:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	FUOV1_OVARY	1	1	0.0395	FALSE	78	55	12	7	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ATP6--MT-ND1	3	0	MT-ATP6	1130	chrM:8656:+	MT-ND1	4728	chrM:3353:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	FUOV1_OVARY	1	1	0.0395	FALSE	78	55	12	7	0	FALSE	ACH-000574
FUOV1_OVARY	MT-ND4--MT-ND4L	3	0	MT-ND4	1004	chrM:10763:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	FUOV1_OVARY	1	1	0.0395	FALSE	344	821	44	306	0	FALSE	ACH-000574
FUOV1_OVARY	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	FUOV1_OVARY	1	1	0.0395	FALSE	462	80	0	856	0	FALSE	ACH-000574
FUOV1_OVARY	WTAPP1--RUVBL1	3	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0395	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	FUOV1_OVARY	1	1	0.0395	TRUE	9	252	6	66	0	FALSE	ACH-000574
FUOV1_OVARY	RP11-634B7.4--TRIM58	1	7	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	4	1	0.67	0.0132	0.0922	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	FUOV1_OVARY	0.67	1	0.1054	TRUE	158	633	76	73	0	FALSE	ACH-000574
FUOV1_OVARY	CDK5RAP1--DOCK3	2	2	CDK5RAP1	7976	chr20:31973456:-	DOCK3	26093	chr3:51101879:+	ONLY_REF_SPLICE	YES	138	13	0.03	0.24	0.0263	0.0263	CDK5RAP1->CDK5_regulatory_subunit_associated_protein_1,chr20:31946645-31989367:-,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	FUOV1_OVARY	0.03	0.24	0.0526	TRUE	0	0	0	1	0	FALSE	ACH-000574
FUOV1_OVARY	DTNB--HADHA	1	6	DTNB	15974	chr2:25754342:-	HADHA	49805	chr2:26432758:-	ONLY_REF_SPLICE	YES	28	363	0.2	0.02	0.0132	0.079	DTNB->chr2:25600067-25896503:-,dystrobrevin_beta,HADHA->chr2:26413504-26467594:-,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_alpha_subunit	FUOV1_OVARY	0.02	0.2	0.0922	TRUE	0	0	0	1	0	FALSE	ACH-000574
FUOV1_OVARY	HMGCR--RIMS2	2	2	HMGCR	10536	chr5:74646199:+	RIMS2	23678	chr8:104709314:+	ONLY_REF_SPLICE	YES	103	1	0.04	0.8	0.0263	0.0263	HMGCR->3-hydroxy-3-methylglutaryl-CoA_reductase,Oncogene{Bushman},chr5:74632154-74657929:+,RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2	FUOV1_OVARY	0.04	0.8	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0263	0.0263	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	FUOV1_OVARY	0.18	1	0.0526	FALSE	164	806	69	479	0	FALSE	ACH-000574
FUOV1_OVARY	RP11-120D5.1--MID1	2	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	8	0.67	0.33	0.0263	0.0263	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	FUOV1_OVARY	0.33	0.67	0.0526	FALSE	0	48	1	163	0	FALSE	ACH-000574
FUOV1_OVARY	TECPR1--OCM2	2	2	TECPR1	1126	chr7:97881438:-	OCM2	32060	chr7:97616468:-	ONLY_REF_SPLICE	YES	1	44	0.8	0.08	0.0263	0.0263	TECPR1->chr7:97843936-97881563:-,tectonin_beta-propeller_repeat_containing_1,OCM2->chr7:97613996-97620481:-,oncomodulin_2	FUOV1_OVARY	0.08	0.8	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	HMGA2--PSPC1	2	1	HMGA2	3338	chr12:66221867:+	PSPC1	34548	chr13:20283739:-	ONLY_REF_SPLICE	YES	656	174	0	0.02	0.0263	0.0132	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1	FUOV1_OVARY	0	0.02	0.0395	FALSE	0	0	0	1	0	FALSE	ACH-000574
FUOV1_OVARY	PDE4D--ELOVL7	2	1	PDE4D	26151	chr5:58571164:-	ELOVL7	61507	chr5:60095057:-	ONLY_REF_SPLICE	YES	2	23	0.6	0.12	0.0263	0.0132	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,ELOVL7->ELOVL_fatty_acid_elongase_7,chr5:60047618-60140216:-	FUOV1_OVARY	0.12	0.6	0.0395	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	SLC16A12--LIPA	2	1	SLC16A12	5062	chr10:91222136:-	LIPA	29664	chr10:91007406:-	ONLY_REF_SPLICE	YES	15	21	0.17	0.12	0.0263	0.0132	NEIGHBORS[15737],SLC16A12->chr10:91190051-91316398:-,solute_carrier_family_16_member_12,LIPA->chr10:90973326-91174314:-,lipase_A,_lysosomal_acid_type	FUOV1_OVARY	0.12	0.17	0.0395	FALSE	12	128	21	13	0	FALSE	ACH-000574
FUOV1_OVARY	ANP32E--CGGBP1	2	0	ANP32E	4797	chr1:150202906:-	CGGBP1	19961	chr3:88105149:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,CGGBP1->CGG_triplet_repeat_binding_protein_1,chr3:88101094-88199035:-	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	ARHGAP29--BAZ2B	2	0	ARHGAP29	9685	chr1:94668656:-	BAZ2B	88653	chr2:160189197:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-,BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	ARHGEF3--CTNNB1	2	0	ARHGEF3	1104	chr3:57113254:-	CTNNB1	37954	chr3:41265512:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	ARHGEF3->Rho_guanine_nucleotide_exchange_factor_3,chr3:56761446-57113357:-,CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	ATF7--ITGA5	2	0	ATF7	13231	chr12:53917060:-	ITGA5	38810	chr12:54792482:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-,ITGA5->chr12:54789045-54813244:-,integrin_subunit_alpha_5	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	FHIT--AKT2	2	0	FHIT	1159	chr3:61236975:-	AKT2	36191	chr19:40762961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	LSM14A--SCML1	2	0	LSM14A	10503	chr19:34712643:+	SCML1	21317	chrX:17764138:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	LSM14A->LSM14A_mRNA_processing_body_assembly_factor,chr19:34663409-34720420:+,SCML1->chrX:17755588-17773105:+,sex_comb_on_midleg-like_1_(Drosophila)	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	NPC1--RIOK3	2	0	NPC1	14243	chr18:21127970:-	RIOK3	42511	chr18:21053393:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	LOCAL_INVERSION:-:+:[19581],NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-,RIOK3->RIO_kinase_3,chr18:21032787-21066567:+	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	NUP214--SKIL	2	0	NUP214	13412	chr9:134020141:+	SKIL	54576	chr3:170102321:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	PRMT10--ARL14EP	2	0	PRMT10	1432	chr4:148604950:-	ARL14EP	21745	chr11:30352433:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	PRMT10->chr4:148558936-148605381:-,ARL14EP->ADP_ribosylation_factor_like_GTPase_14_effector_protein,chr11:30344598-30359774:+	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	SLC31A1--HSPA8	2	0	SLC31A1	1151	chr9:115983958:+	HSPA8	19556	chr11:122929538:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	SLC31A1->chr9:115983808-116028674:+,solute_carrier_family_31_member_1,HSPA8->chr11:122928197-122933938:-,heat_shock_protein_family_A_(Hsp70)_member_8	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TASP1--RP5-1069C8.2	2	0	TASP1	21244	chr20:13296617:-	RP5-1069C8.2	29257	chr20:12921584:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	TASP1->chr20:13246709-13619587:-,taspase_1,RP5-1069C8.2->chr20:12845850-12933167:-	FUOV1_OVARY	1	1	0.0263	TRUE	1	0	0	3	0	TRUE	ACH-000574
FUOV1_OVARY	TBC1D13--DANCR	2	0	TBC1D13	10388	chr9:131568590:+	DANCR	17402	chr4:53578991:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	TBC1D13->TBC1_domain_family_member_13,chr9:131549483-131572711:+,DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	TCF7L1--GTPBP10	2	0	TCF7L1	2041	chr2:85361573:+	GTPBP10	29617	chr7:89982130:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	TCF7L1->chr2:85360533-85537511:+,transcription_factor_7_like_1,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	FUOV1_OVARY	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000574
FUOV1_OVARY	CDK5RAP1--DOCK3	1	3	CDK5RAP1	10249	chr20:31967267:-	DOCK3	27242	chr3:51112787:+	ONLY_REF_SPLICE	YES	176	1	0.02	0.8	0.0132	0.0395	CDK5RAP1->CDK5_regulatory_subunit_associated_protein_1,chr20:31946645-31989367:-,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	FUOV1_OVARY	0.02	0.8	0.0527	TRUE	0	0	0	1	0	FALSE	ACH-000574
FUOV1_OVARY	UBE2H--ZC3HC1	1	2	UBE2H	2497	chr7:129591118:-	ZC3HC1	21402	chr7:129688984:-	ONLY_REF_SPLICE	YES	98	72	0.03	0.04	0.0132	0.0263	LOCAL_REARRANGEMENT:-:[65337],UBE2H->chr7:129470572-129592789:-,ubiquitin_conjugating_enzyme_E2_H,ZC3HC1->chr7:129658126-129691291:-,zinc_finger_C3HC-type_containing_1	FUOV1_OVARY	0.03	0.04	0.0395	TRUE	0	0	0	2	0	FALSE	ACH-000574
FUOV1_OVARY	CHTF8--CFDP1	1	1	CHTF8	1101	chr16:69166387:-	CFDP1	22088	chr16:75339080:-	ONLY_REF_SPLICE	YES	15	192	0.12	0.01	0.0132	0.0132	CHTF8->chr16:69151913-69166487:-,chr16:69152757-69154331:-,chromosome_transmission_fidelity_factor_8,CFDP1->chr16:75327596-75467383:-,craniofacial_development_protein_1	FUOV1_OVARY	0.01	0.12	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000574
FUOV1_OVARY	HSP90AA1--MRPS23	1	1	HSP90AA1	7819	chr14:102549371:-	MRPS23	16762	chr17:55917296:-	ONLY_REF_SPLICE	YES	4216	269	0	0.01	0.0132	0.0132	HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1,MRPS23->chr17:55916842-55927417:-,mitochondrial_ribosomal_protein_S23	FUOV1_OVARY	0	0.01	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000574
FUOV1_OVARY	NOC4L--FBRSL1	1	1	NOC4L	5448	chr12:132633440:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	60	5	0.03	0.29	0.0132	0.0132	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	FUOV1_OVARY	0.03	0.29	0.0264	TRUE	4	9	0	12	0	FALSE	ACH-000574
FUOV1_OVARY	PHF20--GNB1	1	1	PHF20	4583	chr20:34389527:+	GNB1	37038	chr1:1770677:-	ONLY_REF_SPLICE	NO	34	11	0.06	0.15	0.0132	0.0132	PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	FUOV1_OVARY	0.06	0.15	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000574
MEWO_SKIN	HSPBP1--GRK5	112	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5128	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	MEWO_SKIN	1	1	1.5128	TRUE	1	39	0	134	39	FALSE	ACH-000987
MEWO_SKIN	TIMM23B--LINC00843	70	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9455	0.2296	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MEWO_SKIN	0.99	1	1.1751	TRUE	508	994	45	981	0	FALSE	ACH-000987
MEWO_SKIN	UBE2D3--RP11-499E18.1	52	42	UBE2D3	9405	chr4:103730829:-	RP11-499E18.1	20845	chr4:103371224:-	INCL_NON_REF_SPLICE	YES	314	0	0.23	1	0.7023	0.5673	UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,RP11-499E18.1->chr4:103339759-103371167:-	MEWO_SKIN	0.23	1	1.2696	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	TTC7B--CTD-3035D6.2	38	7	TTC7B	1305	chr14:91282519:-	CTD-3035D6.2	36679	chr14:91289497:-	ONLY_REF_SPLICE	YES	13	0	0.78	1	0.5133	0.0945	LOCAL_REARRANGEMENT:-:[5886],TTC7B->chr14:91006932-91282823:-,tetratricopeptide_repeat_domain_7B,CTD-3035D6.2->chr14:91288709-91294472:-	MEWO_SKIN	0.78	1	0.6078	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	UBE2D3--RP11-499E18.1	30	26	UBE2D3	9405	chr4:103730829:-	RP11-499E18.1	24682	chr4:103340145:-	ONLY_REF_SPLICE	YES	314	15	0.15	0.79	0.4052	0.3512	UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,RP11-499E18.1->chr4:103339759-103371167:-	MEWO_SKIN	0.15	0.79	0.7564	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	TIMM23--RP11-464F9.1	36	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	151	1	0.2	0.97	0.4862	0.0135	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MEWO_SKIN	0.2	0.97	0.4997	TRUE	519	3926	326	965	0	FALSE	ACH-000987
MEWO_SKIN	MT-TA--MT-TC	31	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4187	0.0405	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MEWO_SKIN	1	1	0.4592	FALSE	462	80	0	856	0	FALSE	ACH-000987
MEWO_SKIN	MT-ND6--MT-TE	23	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3107	0.0675	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MEWO_SKIN	1	1	0.3782	FALSE	499	1288	110	792	0	FALSE	ACH-000987
MEWO_SKIN	UBE2D3--RP11-499E18.1	14	33	UBE2D3	9405	chr4:103730829:-	RP11-499E18.1	23876	chr4:103340951:-	ONLY_REF_SPLICE	YES	314	6	0.13	0.89	0.1891	0.4457	UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,RP11-499E18.1->chr4:103339759-103371167:-	MEWO_SKIN	0.13	0.89	0.6348	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	MT-ND6--MT-TE	17	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2296	0.081	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MEWO_SKIN	1	1	0.3106	FALSE	499	1288	110	792	0	FALSE	ACH-000987
MEWO_SKIN	HSP90AB1--MT-RNR2	18	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2720	0	0.01	1	0.2431	0.0135	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MEWO_SKIN	0.01	1	0.2566	FALSE	13	9	0	364	0	FALSE	ACH-000987
MEWO_SKIN	ZNF654--HMGB2	14	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1891	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MEWO_SKIN	1	1	0.1891	TRUE	0	0	0	518	0	FALSE	ACH-000987
MEWO_SKIN	RP11-123O10.4--GRIP1	13	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1756	0.0135	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MEWO_SKIN	1	1	0.1891	FALSE	416	2512	207	587	0	FALSE	ACH-000987
MEWO_SKIN	HSP90AB1--MT-RNR2	12	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2716	0	0	1	0.1621	0.0135	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MEWO_SKIN	0	1	0.1756	FALSE	13	9	0	364	0	FALSE	ACH-000987
MEWO_SKIN	NPM1P24--SET	12	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	19	934	0.41	0.01	0.1621	0.0135	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MEWO_SKIN	0.01	0.41	0.1756	TRUE	0	0	0	434	0	FALSE	ACH-000987
MEWO_SKIN	UBE2D3--RP11-499E18.1	5	29	UBE2D3	9405	chr4:103730829:-	RP11-499E18.1	24311	chr4:103340516:-	ONLY_REF_SPLICE	YES	314	10	0.1	0.77	0.0675	0.3917	UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,RP11-499E18.1->chr4:103339759-103371167:-	MEWO_SKIN	0.1	0.77	0.4592	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	MT-ND6--MT-TE	7	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0945	0.2161	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MEWO_SKIN	0.92	1	0.3106	FALSE	499	1288	110	792	0	FALSE	ACH-000987
MEWO_SKIN	MT-ND6--MT-TE	7	12	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0945	0.1621	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MEWO_SKIN	1	1	0.2566	FALSE	499	1288	110	792	0	FALSE	ACH-000987
MEWO_SKIN	UBE2D3--RP11-499E18.1	1	33	UBE2D3	9405	chr4:103730829:-	RP11-499E18.1	22774	chr4:103351655:-	ONLY_REF_SPLICE	NO	314	6	0.1	0.85	0.0135	0.4457	UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,RP11-499E18.1->chr4:103339759-103371167:-	MEWO_SKIN	0.1	0.85	0.4592	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	MT-ND6--MT-TE	3	24	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0405	0.3242	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MEWO_SKIN	0.93	1	0.3647	FALSE	499	1288	110	792	0	FALSE	ACH-000987
MEWO_SKIN	MT-ND6--MT-TE	7	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0945	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MEWO_SKIN	1	1	0.0945	FALSE	499	1288	110	792	0	FALSE	ACH-000987
MEWO_SKIN	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.081	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MEWO_SKIN	1	1	0.081	FALSE	183	104	9	328	0	FALSE	ACH-000987
MEWO_SKIN	MT-TA--MT-TC	5	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0.0405	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MEWO_SKIN	1	1	0.108	FALSE	462	80	0	856	0	FALSE	ACH-000987
MEWO_SKIN	MBP--MT-ND4	5	1	MBP	21723	chr18:74701983:-	MT-ND4	36390	chrM:11226:+	INCL_NON_REF_SPLICE	YES	875	9695	0.01	0	0.0675	0.0135	MBP->chr18:74690783-74845639:-,myelin_basic_protein,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	MEWO_SKIN	0	0.01	0.081	FALSE	41	0	0	3	0	FALSE	ACH-000987
MEWO_SKIN	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MEWO_SKIN	1	1	0.0675	FALSE	63	17	1	58	0	FALSE	ACH-000987
MEWO_SKIN	RP11-444D3.1--SOX5	5	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0675	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MEWO_SKIN	1	1	0.0675	TRUE	477	1352	189	275	0	FALSE	ACH-000987
MEWO_SKIN	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	7058	0	0	1	0.054	0.0135	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MEWO_SKIN	0	1	0.0675	FALSE	63	17	1	58	0	FALSE	ACH-000987
MEWO_SKIN	PINX1--RP1L1	4	1	PINX1	6234	chr8:10683662:-	RP1L1	17312	chr8:10480730:-	ONLY_REF_SPLICE	YES	44	0	0.1	1	0.054	0.0135	NEIGHBORS[52776],PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	MEWO_SKIN	0.1	1	0.0675	FALSE	1	8	0	15	0	FALSE	ACH-000987
MEWO_SKIN	MT-ND5--MT-CO1	3	4	MT-ND5	2653	chrM:13989:+	MT-CO1	6235	chrM:6326:+	INCL_NON_REF_SPLICE	YES	1583	13990	0	0	0.0405	0.054	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MEWO_SKIN	0	0	0.0945	FALSE	8	12	2	9	0	FALSE	ACH-000987
MEWO_SKIN	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MEWO_SKIN	1	1	0.054	TRUE	0	0	0	434	0	FALSE	ACH-000987
MEWO_SKIN	RP1-34H18.1--RP11-781A6.1	4	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.054	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	MEWO_SKIN	1	1	0.054	TRUE	94	160	11	37	0	FALSE	ACH-000987
MEWO_SKIN	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1265	chrM:8791:+	MT-RNR2	4732	chrM:1721:+	INCL_NON_REF_SPLICE	NO	11260	0	0	1	0.0405	0.0405	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MEWO_SKIN	0	1	0.081	FALSE	63	17	1	58	0	FALSE	ACH-000987
MEWO_SKIN	NRIP1--AF127936.7	3	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0405	0.027	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MEWO_SKIN	0.56	1	0.0675	FALSE	164	806	69	479	0	FALSE	ACH-000987
MEWO_SKIN	MT-ATP6--MT-CO2	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	27	0	0.13	1	0.0405	0.0135	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	MEWO_SKIN	0.13	1	0.054	FALSE	59	21	0	114	0	FALSE	ACH-000987
MEWO_SKIN	TOM1L2--MYO15B	3	1	TOM1L2	2246	chr17:17810761:-	MYO15B	38619	chr17:73598911:+	ONLY_REF_SPLICE	YES	41	1	0.09	0.8	0.0405	0.0135	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,MYO15B->chr17:73584139-73622929:+,myosin_XVB	MEWO_SKIN	0.09	0.8	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	MT-ATP6--MT-CO1	3	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MEWO_SKIN	1	1	0.0405	FALSE	183	104	9	328	0	FALSE	ACH-000987
MEWO_SKIN	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MEWO_SKIN	1	1	0.0405	FALSE	63	17	1	58	0	FALSE	ACH-000987
MEWO_SKIN	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MEWO_SKIN	1	1	0.0405	FALSE	63	17	1	58	0	FALSE	ACH-000987
MEWO_SKIN	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1172	chrM:8698:+	MT-RNR2	5313	chrM:2302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MEWO_SKIN	1	1	0.0405	FALSE	63	17	1	58	0	FALSE	ACH-000987
MEWO_SKIN	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MEWO_SKIN	1	1	0.0405	FALSE	63	17	1	58	0	FALSE	ACH-000987
MEWO_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MEWO_SKIN	1	1	0.0405	FALSE	499	1288	110	792	0	FALSE	ACH-000987
MEWO_SKIN	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MEWO_SKIN	1	1	0.0405	FALSE	462	80	0	856	0	FALSE	ACH-000987
MEWO_SKIN	NPM1P24--SET	3	0	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MEWO_SKIN	1	1	0.0405	TRUE	0	0	0	434	0	FALSE	ACH-000987
MEWO_SKIN	UBE2D3--RP11-499E18.1	1	7	UBE2D3	3857	chr4:103747642:-	RP11-499E18.1	24682	chr4:103340145:-	ONLY_REF_SPLICE	YES	219	15	0.04	0.35	0.0135	0.0945	UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,RP11-499E18.1->chr4:103339759-103371167:-	MEWO_SKIN	0.04	0.35	0.108	TRUE	0	1	0	1	1	TRUE	ACH-000987
MEWO_SKIN	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.027	0.0135	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MEWO_SKIN	0.75	1	0.0405	FALSE	292	1546	117	613	0	FALSE	ACH-000987
MEWO_SKIN	ITPR2--ZMYM2	2	0	ITPR2	46094	chr12:26636631:-	ZMYM2	92783	chr13:20640991:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,ZMYM2->Oncogene{Bushman},chr13:20532810-20665968:+,zinc_finger_MYM-type_containing_2	MEWO_SKIN	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	MREG--XXbac-BPG308J9.3	2	0	MREG	7114	chr2:216810294:-	XXbac-BPG308J9.3	14660	chr6:29257903:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	MREG->chr2:216809213-216898819:-,melanoregulin,XXbac-BPG308J9.3->chr6:29191750-29258217:+	MEWO_SKIN	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	PMEL--SDCCAG3	2	0	PMEL	4690	chr12:56359720:-	SDCCAG3	17436	chr9:139302390:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein,SDCCAG3->chr9:139296377-139305061:-,serologically_defined_colon_cancer_antigen_3	MEWO_SKIN	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	POLR2F--CSNK1E	2	0	POLR2F	12042	chr22:38382319:+	CSNK1E	29171	chr22:38710174:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},POLR2F->chr22:38348614-38437922:+,polymerase_(RNA)_II_subunit_F,CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-	MEWO_SKIN	1	1	0.027	TRUE	0	0	0	2	0	TRUE	ACH-000987
MEWO_SKIN	RBM6--EXOG	2	0	RBM6	1219	chr3:49977658:+	EXOG	39069	chr3:38542846:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,EXOG->chr3:38537618-38583652:+,endo/exonuclease_(5'-3'),_endonuclease_G-like	MEWO_SKIN	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	ZNF106--ACTN1	2	0	ZNF106	13210	chr15:42736400:-	ACTN1	64672	chr14:69341734:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	ZNF106->chr15:42705021-42783321:-,zinc_finger_protein_106,ACTN1->actinin_alpha_1,chr14:69340860-69446157:-	MEWO_SKIN	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000987
MEWO_SKIN	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0135	0.0135	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MEWO_SKIN	0.67	1	0.027	FALSE	125	705	46	456	0	FALSE	ACH-000987
MEWO_SKIN	PQLC1--RP11-119D9.1	1	1	PQLC1	14051	chr18:77679184:-	RP11-119D9.1	22604	chr11:67655624:+	ONLY_REF_SPLICE	YES	56	0	0.03	1	0.0135	0.0135	PQLC1->PQ_loop_repeat_containing_1,chr18:77662420-77711664:-,RP11-119D9.1->chr11:67653948-67673821:+	MEWO_SKIN	0.03	1	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000987
MEWO_SKIN	SNHG8--DAG1	1	1	SNHG8	1429	chr4:119200292:+	DAG1	13195	chr3:49547852:+	ONLY_REF_SPLICE	YES	237	246	0.01	0.01	0.0135	0.0135	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,DAG1->chr3:49506146-49573048:+,dystroglycan_1	MEWO_SKIN	0.01	0.01	0.027	FALSE	0	1	0	2	1	FALSE	ACH-000987
NCIH524_LUNG	PVT1--SNTB1	8455	7143	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	3751	6	0.81	1	111.1241	93.8805	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH524_LUNG	0.81	1	205.0046	TRUE	0	0	0	25	0	FALSE	ACH-000816
NCIH524_LUNG	PVT1--SNTB1	5	7149	PVT1	1270	chr8:128807048:+	SNTB1	39476	chr8:121554240:-	INCL_NON_REF_SPLICE	YES	4024	6	0.64	1	0.0657	93.9593	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH524_LUNG	0.64	1	94.025	TRUE	0	0	0	25	0	FALSE	ACH-000816
NCIH524_LUNG	NCL--PTMA	67	2	NCL	6884	chr2:232325380:-	PTMA	22009	chr2:232576646:+	INCL_NON_REF_SPLICE	YES	1723	3408	0.04	0.02	0.8806	0.0263	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH524_LUNG	0.02	0.04	0.9069	TRUE	1	0	0	7	0	FALSE	ACH-000816
NCIH524_LUNG	SNTB1--LINC00861	62	21	SNTB1	13491	chr8:121550934:-	LINC00861	24268	chr8:126954935:-	INCL_NON_REF_SPLICE	YES	6886	284	0.01	0.23	0.8149	0.276	SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1,LINC00861->chr8:126934552-126963493:-,long_intergenic_non-protein_coding_RNA_861	NCIH524_LUNG	0.01	0.23	1.0909	TRUE	0	0	0	1	0	FALSE	ACH-000816
NCIH524_LUNG	RP11-680G10.1--GSE1	55	29	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	26	1	0.76	0.7229	0.3811	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH524_LUNG	0.76	1	1.104	TRUE	458	1351	185	561	0	FALSE	ACH-000816
NCIH524_LUNG	OR51S1--TP53I11	60	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7886	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH524_LUNG	1	1	0.7886	TRUE	402	216	10	229	0	FALSE	ACH-000816
NCIH524_LUNG	NCL--PTMA	58	2	NCL	6884	chr2:232325380:-	PTMA	21452	chr2:232576089:+	INCL_NON_REF_SPLICE	YES	1723	3822	0.03	0.02	0.7623	0.0263	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH524_LUNG	0.02	0.03	0.7886	TRUE	1	0	0	7	0	FALSE	ACH-000816
NCIH524_LUNG	TIMM23B--LINC00843	53	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6966	0.2629	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH524_LUNG	1	1	0.9595	TRUE	508	994	45	981	0	FALSE	ACH-000816
NCIH524_LUNG	NCL--PTMA	56	2	NCL	6884	chr2:232325380:-	PTMA	21433	chr2:232576070:+	INCL_NON_REF_SPLICE	YES	1723	4276	0.03	0.01	0.736	0.0263	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH524_LUNG	0.01	0.03	0.7623	TRUE	1	0	0	7	0	FALSE	ACH-000816
NCIH524_LUNG	NOS2--MYO18A	46	17	NOS2	13193	chr17:26099334:-	MYO18A	53887	chr17:27430682:-	ONLY_REF_SPLICE	YES	59	96	0.52	0.4	0.6046	0.2234	NOS2->chr17:26083792-26127525:-,nitric_oxide_synthase_2,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	NCIH524_LUNG	0.4	0.52	0.828	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	KANSL1--ARL17B	29	22	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	42	138	0.55	0.27	0.3811	0.2891	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH524_LUNG	0.27	0.55	0.6702	TRUE	181	1564	124	196	0	FALSE	ACH-000816
NCIH524_LUNG	TIMM23--RP11-464F9.1	29	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	146	3	0.18	0.91	0.3811	0.0394	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH524_LUNG	0.18	0.91	0.4205	TRUE	519	3926	326	965	0	FALSE	ACH-000816
NCIH524_LUNG	RP11-680G10.1--GSE1	23	15	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	232	1	0.14	0.3023	0.1971	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH524_LUNG	0.14	1	0.4994	TRUE	465	1949	224	605	0	FALSE	ACH-000816
NCIH524_LUNG	ZNF654--HMGB2	25	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3286	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH524_LUNG	1	1	0.3286	TRUE	0	0	0	518	0	FALSE	ACH-000816
NCIH524_LUNG	NSF--LRRC37A2	22	4	NSF	15332	chr17:44782220:+	LRRC37A2	33686	chr17:44594728:+	ONLY_REF_SPLICE	YES	173	18	0.13	0.59	0.2891	0.0526	LOCAL_REARRANGEMENT:+:[35019],NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	NCIH524_LUNG	0.13	0.59	0.3417	TRUE	1	0	0	3	0	TRUE	ACH-000816
NCIH524_LUNG	RPS19--LYPD4	16	17	RPS19	2294	chr19:42365281:+	LYPD4	14692	chr19:42343098:-	ONLY_REF_SPLICE	YES	3227	0	0.01	1	0.2103	0.2234	LOCAL_INVERSION:+:-:[15228],RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19,LYPD4->LY6/PLAUR_domain_containing_4,chr19:42341148-42348760:-	NCIH524_LUNG	0.01	1	0.4337	TRUE	0	0	0	1	0	FALSE	ACH-000816
NCIH524_LUNG	NIPA2--POLA1	17	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2234	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	NCIH524_LUNG	1	1	0.2234	TRUE	46	1352	75	139	0	FALSE	ACH-000816
NCIH524_LUNG	MT-ND4--MT-ND4L	3	52	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	6	0	0.9	1	0.0394	0.6834	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH524_LUNG	0.9	1	0.7228	FALSE	344	826	44	306	0	FALSE	ACH-000816
NCIH524_LUNG	MT-ND4--MT-ND4L	3	51	MT-ND4	1100	chrM:10859:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.0394	0.6703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH524_LUNG	0.96	1	0.7097	FALSE	344	826	44	306	0	FALSE	ACH-000816
NCIH524_LUNG	C1orf194--UQCR10	14	4	C1orf194	3284	chr1:109650635:-	UQCR10	8361	chr22:30163372:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.184	0.0526	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.41%,GTEx_FI:{Testis=[count:16=pct:15.2],Pituitary=[count:4=pct:7.7],Lung=[count:4=pct:2.4],Brain=[count:3=pct:0.5],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Fallopian_Tube=[count:1=pct:16.7],Thyroid=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=13;pct=0.15%;dist=Testis=12,Adipose_-_Subcutaneous=1},C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	NCIH524_LUNG	1	1	0.2366	TRUE	26	6	0	14	0	FALSE	ACH-000816
NCIH524_LUNG	PLXDC1--TAF13	14	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.184	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH524_LUNG	1	1	0.184	TRUE	7	10	0	216	0	FALSE	ACH-000816
NCIH524_LUNG	MT-ND4--MT-ND4L	4	34	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	41	0	0.48	1	0.0526	0.4469	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH524_LUNG	0.48	1	0.4995	FALSE	344	827	44	306	0	FALSE	ACH-000816
NCIH524_LUNG	RPS19--LYPD4	8	10	RPS19	2294	chr19:42365281:+	LYPD4	15455	chr19:42342335:-	ONLY_REF_SPLICE	YES	3227	5	0.01	0.78	0.1051	0.1314	LOCAL_INVERSION:+:-:[15228],RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19,LYPD4->LY6/PLAUR_domain_containing_4,chr19:42341148-42348760:-	NCIH524_LUNG	0.01	0.78	0.2365	TRUE	0	0	0	1	0	FALSE	ACH-000816
NCIH524_LUNG	SNTB1--LINC00861	4	25	SNTB1	13670	chr8:121550755:-	LINC00861	20777	chr8:126958426:-	INCL_NON_REF_SPLICE	YES	6054	10	0	0.74	0.0526	0.3286	SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1,LINC00861->chr8:126934552-126963493:-,long_intergenic_non-protein_coding_RNA_861	NCIH524_LUNG	0	0.74	0.3812	TRUE	0	0	0	1	0	FALSE	ACH-000816
NCIH524_LUNG	NSF--LRRC37A2	8	5	NSF	15332	chr17:44782220:+	LRRC37A2	28875	chr17:44588877:+	ONLY_REF_SPLICE	YES	173	0	0.07	1	0.1051	0.0657	LOCAL_REARRANGEMENT:+:[35019],NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	NCIH524_LUNG	0.07	1	0.1708	TRUE	1	0	0	3	0	TRUE	ACH-000816
NCIH524_LUNG	NCL--PTMA	8	2	NCL	7075	chr2:232325189:-	PTMA	21468	chr2:232576105:+	INCL_NON_REF_SPLICE	NO	1843	3694	0.01	0	0.1051	0.0263	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH524_LUNG	0	0.01	0.1314	FALSE	1	0	0	7	0	FALSE	ACH-000816
NCIH524_LUNG	AP000525.9--LA16c-60G3.6	8	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	3	0	0.75	1	0.1051	0.0131	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH524_LUNG	0.75	1	0.1182	TRUE	0	42	0	133	42	FALSE	ACH-000816
NCIH524_LUNG	MT-ND4--MT-ND4L	6	9	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8754	0	0	1	0.0789	0.1183	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH524_LUNG	0	1	0.1972	FALSE	328	800	43	304	0	FALSE	ACH-000816
NCIH524_LUNG	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1051	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH524_LUNG	1	1	0.1051	FALSE	13	9	0	364	0	FALSE	ACH-000816
NCIH524_LUNG	MT-ND4--MT-ND4L	7	3	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	14	0	0.42	1	0.092	0.0394	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH524_LUNG	0.42	1	0.1314	FALSE	344	826	44	306	0	FALSE	ACH-000816
NCIH524_LUNG	NRIP1--AF127936.7	7	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.69	1	0.092	0.0263	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH524_LUNG	0.69	1	0.1183	FALSE	125	705	46	456	0	FALSE	ACH-000816
NCIH524_LUNG	SNTB1--LINC00861	6	5	SNTB1	12215	chr8:121554050:-	LINC00861	20777	chr8:126958426:-	ONLY_REF_SPLICE	YES	3710	10	0	0.52	0.0789	0.0657	SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1,LINC00861->chr8:126934552-126963493:-,long_intergenic_non-protein_coding_RNA_861	NCIH524_LUNG	0	0.52	0.1446	TRUE	0	0	0	1	0	FALSE	ACH-000816
NCIH524_LUNG	MT-ND4--MT-ND4L	6	3	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	377	0	0.02	1	0.0789	0.0394	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH524_LUNG	0.02	1	0.1183	FALSE	344	827	44	306	0	FALSE	ACH-000816
NCIH524_LUNG	GDAP1--RP11-758M4.1	6	2	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	136	0	0.06	1	0.0789	0.0263	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH524_LUNG	0.06	1	0.1052	TRUE	7	28	0	43	0	FALSE	ACH-000816
NCIH524_LUNG	AL589743.1--RP11-536C10.17	6	1	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.0789	0.0131	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	NCIH524_LUNG	0.7	1	0.092	TRUE	0	33	0	45	33	FALSE	ACH-000816
NCIH524_LUNG	C15orf57--CBX3	5	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	45	43	0.18	0.19	0.0657	0.0657	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH524_LUNG	0.18	0.19	0.1314	TRUE	267	562	48	632	0	FALSE	ACH-000816
NCIH524_LUNG	DHRS7B--TNFRSF13B	6	1	DHRS7B	2421	chr17:21030304:+	TNFRSF13B	22297	chr17:16843825:-	ONLY_REF_SPLICE	YES	0	8	1	0.47	0.0789	0.0131	DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,TNFRSF13B->Oncogene{Bushman},chr17:16832849-16875432:-,tumor_necrosis_factor_receptor_superfamily_member_13B	NCIH524_LUNG	0.47	1	0.092	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	LINC00299--AC007464.1	6	1	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0789	0.0131	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	NCIH524_LUNG	1	1	0.092	TRUE	67	49	0	25	0	FALSE	ACH-000816
NCIH524_LUNG	NRIP1--AF127936.7	6	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0789	0.0131	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH524_LUNG	0.88	1	0.092	FALSE	292	1546	117	613	0	FALSE	ACH-000816
NCIH524_LUNG	RP11-123O10.4--GRIP1	6	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0789	0.0131	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH524_LUNG	1	1	0.092	FALSE	416	2512	207	587	0	FALSE	ACH-000816
NCIH524_LUNG	GLP2R--WDR16	5	4	GLP2R	5864	chr17:9739792:+	WDR16	41685	chr17:9545041:+	ONLY_REF_SPLICE	YES	17	0	0.35	1	0.0657	0.0526	GLP2R->chr17:9725523-9795419:+,glucagon_like_peptide_2_receptor,WDR16->chr17:9479944-9546776:+	NCIH524_LUNG	0.35	1	0.1183	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	RP11-59N23.1--CMAS	5	0	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0657	0	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH524_LUNG	1	1	0.0657	TRUE	21	102	17	28	0	FALSE	ACH-000816
NCIH524_LUNG	MT-ND1--MT-TL1	4	3	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0.0394	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH524_LUNG	1	1	0.092	FALSE	210	95	5	49	0	FALSE	ACH-000816
NCIH524_LUNG	RP11-120D5.1--MID1	3	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	6	0.64	0.6	0.0394	0.0789	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH524_LUNG	0.6	0.64	0.1183	FALSE	16	356	14	466	0	FALSE	ACH-000816
NCIH524_LUNG	EIF1--RPS28	4	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH524_LUNG	1	1	0.0526	TRUE	0	0	0	81	0	FALSE	ACH-000816
NCIH524_LUNG	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH524_LUNG	1	1	0.0526	FALSE	13	9	0	364	0	FALSE	ACH-000816
NCIH524_LUNG	MT-ND1--MT-TL1	3	3	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.0394	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH524_LUNG	1	1	0.0788	FALSE	210	95	5	49	0	FALSE	ACH-000816
NCIH524_LUNG	EFCAB11--RP11-944C7.1	3	2	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	25	0	0.17	1	0.0394	0.0263	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	NCIH524_LUNG	0.17	1	0.0657	TRUE	31	91	1	18	0	FALSE	ACH-000816
NCIH524_LUNG	SNTB1--LINC00861	3	2	SNTB1	12215	chr8:121554050:-	LINC00861	26831	chr8:126948577:-	ONLY_REF_SPLICE	YES	3710	49	0	0.09	0.0394	0.0263	SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1,LINC00861->chr8:126934552-126963493:-,long_intergenic_non-protein_coding_RNA_861	NCIH524_LUNG	0	0.09	0.0657	FALSE	0	0	0	1	0	FALSE	ACH-000816
NCIH524_LUNG	NSF--LRRC37A2	2	4	NSF	15332	chr17:44782220:+	LRRC37A2	29680	chr17:44589682:+	ONLY_REF_SPLICE	YES	173	0	0.03	1	0.0263	0.0526	LOCAL_REARRANGEMENT:+:[35019],NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	NCIH524_LUNG	0.03	1	0.0789	TRUE	1	0	0	3	0	FALSE	ACH-000816
NCIH524_LUNG	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH524_LUNG	1	1	0.0394	TRUE	22	156	2	142	0	FALSE	ACH-000816
NCIH524_LUNG	RPS19--LYPD4	2	1	RPS19	2294	chr19:42365281:+	LYPD4	16371	chr19:42341419:-	ONLY_REF_SPLICE	YES	3227	2	0	0.6	0.0263	0.0131	LOCAL_INVERSION:+:-:[15228],RPS19->chr19:42363988-42376994:+,ribosomal_protein_S19,LYPD4->LY6/PLAUR_domain_containing_4,chr19:42341148-42348760:-	NCIH524_LUNG	0	0.6	0.0394	FALSE	0	0	0	1	0	FALSE	ACH-000816
NCIH524_LUNG	AC002472.13--SLC19A1	2	0	AC002472.13	2827	chr22:21402305:+	SLC19A1	20736	chr21:46957922:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	AC002472.13->chr22:21400249-21418457:+,SLC19A1->Oncogene{Bushman},chr21:46913486-46964325:-,solute_carrier_family_19_member_1	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	APRT--GALNS	2	0	APRT	2522	chr16:88876831:-	GALNS	23718	chr16:88889118:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	LOCAL_REARRANGEMENT:-:[1790],APRT->adenine_phosphoribosyltransferase,chr16:88875747-88878352:-,GALNS->Oncogene{Bushman},chr16:88880142-88923378:-,galactosamine_(N-acetyl)-6-sulfatase	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	CNPY2--RP11-762I7.5	2	0	CNPY2	2486	chr12:56708635:-	RP11-762I7.5	17422	chr12:56197512:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	CNPY2->canopy_FGF_signaling_regulator_2,chr12:56703626-56710120:-,RP11-762I7.5->chr12:56151059-56221330:-	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	MMP17--NOC4L	2	0	MMP17	1261	chr12:132313198:+	NOC4L	19756	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	GTEx_FI:{Brain=[count:15=pct:2.3]},MMP17->chr12:132312938-132336328:+,matrix_metallopeptidase_17,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	NCIH524_LUNG	1	1	0.0263	TRUE	7	45	0	7	0	FALSE	ACH-000816
NCIH524_LUNG	MRPS27--MAP1B	2	0	MRPS27	1498	chr5:71615976:-	MAP1B	29496	chr5:71479570:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	LOCAL_INVERSION:-:+:[9841],MRPS27->chr5:71515236-71616473:-,mitochondrial_ribosomal_protein_S27,MAP1B->chr5:71403061-71505395:+,microtubule_associated_protein_1B	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	NOS2--MYO18A	1	4	NOS2	12340	chr17:26100187:-	MYO18A	54953	chr17:27426780:-	ONLY_REF_SPLICE	YES	70	97	0.07	0.05	0.0131	0.0526	NOS2->chr17:26083792-26127525:-,nitric_oxide_synthase_2,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	NCIH524_LUNG	0.05	0.07	0.0657	TRUE	0	0	0	1	0	FALSE	ACH-000816
NCIH524_LUNG	NSF--LRRC37A2	2	0	NSF	15332	chr17:44782220:+	LRRC37A2	44602	chr17:44630766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	LOCAL_REARRANGEMENT:+:[35019],NSF->N-ethylmaleimide_sensitive_factor,chr17:44668035-44834830:+,LRRC37A2->chr17:44588877-44633016:+,leucine-rich_repeat_containing_37_member_A2	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	RCC1--SNX5	2	0	RCC1	2175	chr1:28834672:+	SNX5	23224	chr20:17937681:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	2	0	TRUE	ACH-000816
NCIH524_LUNG	RCC1--SNX5	2	0	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	NCIH524_LUNG	1	1	0.0263	TRUE	0	5	0	11	0	TRUE	ACH-000816
NCIH524_LUNG	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH524_LUNG	1	1	0.0263	FALSE	93	270	15	244	0	FALSE	ACH-000816
NCIH524_LUNG	RP11-242D8.1--ILF3	2	0	RP11-242D8.1	1278	chr17:41322143:-	ILF3	10679	chr19:10781192:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	RP11-242D8.1->chr17:41316200-41322420:-,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	RP11-308D16.4--CANX	2	0	RP11-308D16.4	1386	chrX:135991939:+	CANX	20953	chr5:179132680:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	RP11-308D16.4->chrX:135991554-136103789:+,CANX->calnexin,chr5:179105629-179157926:+	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	RPL31--FUS	2	0	RPL31	5008	chr2:101622533:+	FUS	20528	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	RPL31->chr2:101618177-101640494:+,ribosomal_protein_L31,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	1	1	0	TRUE	ACH-000816
NCIH524_LUNG	UBR3--UBN1	2	0	UBR3	31210	chr2:170863700:+	UBN1	65520	chr16:4926872:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	UBR3->chr2:170683968-170940641:+,ubiquitin_protein_ligase_E3_component_n-recognin_3_(putative),UBN1->chr16:4896666-4932361:+,ubinuclein_1	NCIH524_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	GLP2R--USP43	1	2	GLP2R	5864	chr17:9739792:+	USP43	26956	chr17:9559720:+	ONLY_REF_SPLICE	YES	17	8	0.15	0.27	0.0131	0.0263	LOCAL_REARRANGEMENT:+:[92515],GLP2R->chr17:9725523-9795419:+,glucagon_like_peptide_2_receptor,USP43->chr17:9548015-9633008:+,ubiquitin_specific_peptidase_43	NCIH524_LUNG	0.15	0.27	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	SAMD5--SASH1	1	2	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	NO	4	7	0.43	0.3	0.0131	0.0263	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NCIH524_LUNG	0.3	0.43	0.0394	TRUE	53	396	64	110	0	FALSE	ACH-000816
NCIH524_LUNG	ATRX--PGK1	1	1	ATRX	1235	chrX:77041468:-	PGK1	52000	chrX:77365364:+	ONLY_REF_SPLICE	YES	138	1957	0.01	0	0.0131	0.0131	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1	NCIH524_LUNG	0	0.01	0.0262	FALSE	0	1	0	9	0	FALSE	ACH-000816
NCIH524_LUNG	C10orf76--SEC16A	1	1	C10orf76	2222	chr10:103799770:-	SEC16A	43096	chr9:139355726:-	ONLY_REF_SPLICE	YES	22	136	0.08	0.01	0.0131	0.0131	C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76,SEC16A->SEC16_homolog_A,_endoplasmic_reticulum_export_factor,chr9:139334549-139372141:-	NCIH524_LUNG	0.01	0.08	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000816
NCIH524_LUNG	C7orf50--MAD1L1	1	1	C7orf50	3078	chr7:1166893:-	MAD1L1	49568	chr7:1976533:-	ONLY_REF_SPLICE	NO	239	29	0.01	0.06	0.0131	0.0131	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	NCIH524_LUNG	0.01	0.06	0.0262	FALSE	0	2	0	1	1	FALSE	ACH-000816
NCIH524_LUNG	DHRS7B--TNFRSF13B	1	1	DHRS7B	2421	chr17:21030304:+	TNFRSF13B	24724	chr17:16836490:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0131	0.0131	DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,TNFRSF13B->Oncogene{Bushman},chr17:16832849-16875432:-,tumor_necrosis_factor_receptor_superfamily_member_13B	NCIH524_LUNG	0.67	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	DHRS7B--TNFRSF13B	1	1	DHRS7B	2421	chr17:21030304:+	TNFRSF13B	24963	chr17:16836251:-	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0131	0.0131	DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,TNFRSF13B->Oncogene{Bushman},chr17:16832849-16875432:-,tumor_necrosis_factor_receptor_superfamily_member_13B	NCIH524_LUNG	0.5	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	DHRS7B--TNFRSF13B	1	1	DHRS7B	2421	chr17:21030304:+	TNFRSF13B	21331	chr17:16844791:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0.0131	DHRS7B->chr17:21026677-21096578:+,dehydrogenase/reductase_(SDR_family)_member_7B,TNFRSF13B->Oncogene{Bushman},chr17:16832849-16875432:-,tumor_necrosis_factor_receptor_superfamily_member_13B	NCIH524_LUNG	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000816
NCIH524_LUNG	DLEU2--DLEU1	1	1	DLEU2	5811	chr13:50642233:-	DLEU1	17530	chr13:50678840:+	ONLY_REF_SPLICE	NO	76	75	0.03	0.03	0.0131	0.0131	NEIGHBORS_OVERLAP:-:+:[43549],DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding)	NCIH524_LUNG	0.03	0.03	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000816
NCIH524_LUNG	EFCAB2--KIF26B	1	1	EFCAB2	9604	chr1:245246990:+	KIF26B	27964	chr1:245530136:+	ONLY_REF_SPLICE	NO	5	0	0.29	1	0.0131	0.0131	NEIGHBORS[27821],EFCAB2->EF-hand_calcium_binding_domain_2,chr1:245133007-245290466:+,KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B	NCIH524_LUNG	0.29	1	0.0262	FALSE	12	37	1	2	0	FALSE	ACH-000816
NCIH524_LUNG	EVL--CCDC85C	1	1	EVL	20036	chr14:100599116:+	CCDC85C	42155	chr14:99982623:-	ONLY_REF_SPLICE	YES	375	147	0.01	0.01	0.0131	0.0131	EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+,CCDC85C->chr14:99977603-100070363:-,coiled-coil_domain_containing_85C	NCIH524_LUNG	0.01	0.01	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000816
NCIH524_LUNG	FBRSL1--NOC4L	1	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	40	57	0.05	0.03	0.0131	0.0131	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	NCIH524_LUNG	0.03	0.05	0.0262	TRUE	3	48	0	26	0	FALSE	ACH-000816
NCIH524_LUNG	HGS--PDE6G	1	1	HGS	8125	chr17:79658601:+	PDE6G	25739	chr17:79618715:-	ONLY_REF_SPLICE	YES	361	0	0.01	1	0.0131	0.0131	LOCAL_INVERSION:+:-:[20214],HGS->chr17:79650356-79670168:+,hepatocyte_growth_factor-regulated_tyrosine_kinase_substrate,PDE6G->chr17:79617489-79630142:-,phosphodiesterase_6G	NCIH524_LUNG	0.01	1	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000816
NCIH524_LUNG	MB21D2--FGF12	1	1	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	NO	21	33	0.09	0.06	0.0131	0.0131	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	NCIH524_LUNG	0.06	0.09	0.0262	FALSE	0	17	0	46	0	FALSE	ACH-000816
NCIH524_LUNG	POLE4--RP11-355F16.1	1	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	130	0	0.02	1	0.0131	0.0131	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	NCIH524_LUNG	0.02	1	0.0262	TRUE	5	7	0	37	0	FALSE	ACH-000816
NCIH524_LUNG	RNF152--RP11-879F14.1	1	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	NO	7	0	0.22	1	0.0131	0.0131	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	NCIH524_LUNG	0.22	1	0.0262	FALSE	275	472	65	43	0	FALSE	ACH-000816
NCIH524_LUNG	ZADH2--TSHZ1	1	1	ZADH2	1499	chr18:72920805:-	TSHZ1	22211	chr18:72997403:+	ONLY_REF_SPLICE	YES	114	41	0.02	0.05	0.0131	0.0131	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Brain_-_Hypothalamus=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[1407],ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2,TSHZ1->chr18:72922710-73001905:+,teashirt_zinc_finger_homeobox_1	NCIH524_LUNG	0.02	0.05	0.0262	TRUE	0	4	0	5	1	FALSE	ACH-000816
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-763B22.4--SEC22B	131	30	RP11-763B22.4	1056	chr1:148760559:+	SEC22B	9372	chr1:145109524:+	ONLY_REF_SPLICE	YES	0	304	1	0.35	1.2054	0.276	GTEx_FI:{Brain=[count:9=pct:1.4],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},RP11-763B22.4->chr1:148760504-148761583:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	1	1.4814	TRUE	11	9	1	4	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	124	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1409	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1409	TRUE	0	0	0	518	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	91	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8373	0.2484	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0857	TRUE	508	994	45	981	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	82	12	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7545	0.1104	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8649	FALSE	462	80	0	856	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	48	8	MT-TA	1053	chrM:5603:-	MT-TC	4081	chrM:5815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4417	0.0736	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5153	FALSE	462	80	0	856	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	44	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	87	16	0.34	0.74	0.4049	0.0092	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.74	0.4141	TRUE	519	3926	326	965	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-12N13.4--MT-ATP6	36	0	RP11-12N13.4	1077	chr3:165879680:-	MT-ATP6	5444	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3312	0	RP11-12N13.4->chr3:165878991-165879756:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3312	FALSE	0	0	0	1	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAP1--PTPRD	32	16	UBAP1	1236	chr9:34179238:+	PTPRD	21458	chr9:9574781:-	ONLY_REF_SPLICE	YES	76	0	0.39	1	0.2944	0.1472	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,PTPRD->Oncogene{Bushman},chr9:8314246-10612723:-,protein_tyrosine_phosphatase,_receptor_type_D	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.4416	TRUE	0	0	0	1	0	TRUE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	29	5	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	155	0	0.18	1	0.2668	0.046	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.3128	TRUE	61	154	6	19	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	23	16	GPR141	2513	chr7:37725186:+	NME8	24165	chr7:37923905:+	ONLY_REF_SPLICE	YES	71	25	0.35	0.61	0.2116	0.1472	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.61	0.3588	FALSE	3	3	0	3	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	15	28	GPR141	2513	chr7:37725186:+	NME8	16484	chr7:37896876:+	ONLY_REF_SPLICE	YES	71	2	0.38	0.96	0.138	0.2576	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.96	0.3956	FALSE	7	5	0	3	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-12N13.4--MT-ATP6	17	4	RP11-12N13.4	1077	chr3:165879680:-	MT-ATP6	5283	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	6489	1	0	0.1564	0.0368	RP11-12N13.4->chr3:165878991-165879756:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1932	FALSE	0	0	0	1	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	14	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	4039	0	0	1	0.1288	0.0092	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.138	TRUE	0	0	0	100	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	8	25	GPR141	2513	chr7:37725186:+	NME8	18673	chr7:37902998:+	ONLY_REF_SPLICE	YES	71	16	0.32	0.67	0.0736	0.23	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.67	0.3036	FALSE	0	0	0	2	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	11	5	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1012	0.046	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1472	TRUE	0	1	0	84	1	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	4	31	GPR141	2513	chr7:37725186:+	NME8	15008	chr7:37889862:+	ONLY_REF_SPLICE	YES	71	0	0.33	1	0.0368	0.2852	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.322	FALSE	8	2	0	2	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	10	5	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.092	0.046	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.138	TRUE	0	1	0	84	1	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	10	2	GPR141	2513	chr7:37725186:+	NME8	28465	chr7:37936472:+	ONLY_REF_SPLICE	YES	71	50	0.14	0.19	0.092	0.0184	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.19	0.1104	FALSE	7	4	0	2	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0828	0.046	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1288	FALSE	499	1288	110	792	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0828	0.0184	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1012	FALSE	499	1288	110	792	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	3	23	GPR141	2513	chr7:37725186:+	NME8	19625	chr7:37903950:+	ONLY_REF_SPLICE	YES	71	21	0.27	0.55	0.0276	0.2116	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.55	0.2392	FALSE	0	0	0	2	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	8	2	RP11-353N4.6	9798	chr1:149605867:+	RP11-403I13.4	17475	chr1:149245050:+	INCL_NON_REF_SPLICE	YES	181	3	0.05	0.77	0.0736	0.0184	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.77	0.092	TRUE	1	0	0	1	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	7	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	26	30	0.3	0.27	0.0644	0.0368	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.3	0.1012	TRUE	267	562	48	632	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	3	20	GPR141	2513	chr7:37725186:+	NME8	22989	chr7:37916434:+	ONLY_REF_SPLICE	YES	71	30	0.24	0.43	0.0276	0.184	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.43	0.2116	FALSE	1	0	0	2	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	1	28	GPR141	2513	chr7:37725186:+	NME8	15377	chr7:37890231:+	ONLY_REF_SPLICE	YES	71	1	0.29	0.97	0.0092	0.2576	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.97	0.2668	FALSE	8	2	0	2	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	5	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	28	30	0.32	0.3	0.046	0.0736	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.32	0.1196	TRUE	267	562	48	632	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-12N13.4--MT-ATP6	6	4	RP11-12N13.4	1077	chr3:165879680:-	MT-ATP6	5358	chrM:9118:+	INCL_NON_REF_SPLICE	YES	0	3056	1	0	0.0552	0.0368	RP11-12N13.4->chr3:165878991-165879756:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.092	FALSE	0	0	0	1	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-12N13.4--MT-ATP6	6	4	RP11-12N13.4	1077	chr3:165879680:-	MT-ATP6	5215	chrM:8975:+	INCL_NON_REF_SPLICE	YES	0	8268	1	0	0.0552	0.0368	RP11-12N13.4->chr3:165878991-165879756:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.092	FALSE	0	0	0	1	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-12N13.4--MT-ATP6	6	4	RP11-12N13.4	1084	chr3:165879673:-	MT-ATP6	5386	chrM:9146:+	INCL_NON_REF_SPLICE	YES	0	2691	1	0	0.0552	0.0368	RP11-12N13.4->chr3:165878991-165879756:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.092	FALSE	0	0	0	1	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNM1L--ADIPOR2	6	2	DNM1L	9907	chr12:32866305:+	ADIPOR2	32891	chr12:1863424:+	ONLY_REF_SPLICE	YES	215	70	0.04	0.1	0.0552	0.0184	DNM1L->chr12:32832134-32898486:+,dynamin_1-like,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.1	0.0736	TRUE	0	0	0	1	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0.0184	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0736	FALSE	499	1288	110	792	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0.0552	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1012	FALSE	499	1288	110	792	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	1	21	GPR141	2513	chr7:37725186:+	NME8	21792	chr7:37907304:+	ONLY_REF_SPLICE	YES	71	34	0.24	0.39	0.0092	0.1932	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.39	0.2024	FALSE	1	0	0	2	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0552	FALSE	462	80	0	856	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-12N13.4--MT-ATP6	5	4	RP11-12N13.4	1109	chr3:165879648:-	MT-ATP6	5322	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	5326	1	0	0.046	0.0368	RP11-12N13.4->chr3:165878991-165879756:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0828	FALSE	0	0	0	1	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	4	6	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0.0552	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.092	TRUE	0	1	0	84	1	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	5	1	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	17475	chr1:149245050:+	ONLY_REF_SPLICE	YES	155	3	0.04	0.67	0.046	0.0092	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.67	0.0552	TRUE	30	67	4	15	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	3	8	GPR141	2228	chr7:37724901:+	NME8	16484	chr7:37896876:+	ONLY_REF_SPLICE	YES	54	2	0.17	0.85	0.0276	0.0736	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.85	0.1012	FALSE	7	5	0	3	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	4	3	GPR141	2513	chr7:37725186:+	NME8	25007	chr7:37924747:+	ONLY_REF_SPLICE	YES	71	35	0.09	0.17	0.0368	0.0276	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.17	0.0644	FALSE	3	3	0	3	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	7	MT-ND6	1148	chrM:14526:-	MT-TE	4559	chrM:14709:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0276	0.0644	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.092	FALSE	499	1288	110	792	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	3	5	GPR141	1108	chr7:37723506:+	NME8	24165	chr7:37923905:+	ONLY_REF_SPLICE	YES	32	25	0.2	0.24	0.0276	0.046	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.24	0.0736	FALSE	1	1	0	1	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HLA-A--RPL37A	4	1	HLA-A	3151	chr6:29911187:+	RPL37A	9707	chr2:217363993:+	INCL_NON_REF_SPLICE	YES	2127	9	0	0.36	0.0368	0.0092	HLA-A->chr6:29909037-29913661:+,major_histocompatibility_complex,_class_I,_A,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.36	0.046	FALSE	0	0	0	1	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAP2--CBWD3	4	0	UBAP2	1125	chr9:34048823:-	CBWD3	39411	chr9:70860129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0368	0	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,CBWD3->COBW_domain_containing_3,chr9:70856397-70914929:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	TRUE	0	0	0	1	0	TRUE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP1-34H18.1--NAV3	3	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0.0092	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	TRUE	254	575	65	124	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-12N13.4--MT-ATP6	3	1	RP11-12N13.4	1072	chr3:165879685:-	MT-ATP6	5325	chrM:9085:+	INCL_NON_REF_SPLICE	YES	0	5073	1	0	0.0276	0.0092	RP11-12N13.4->chr3:165878991-165879756:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0368	FALSE	0	0	0	1	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	2	5	RP11-353N4.6	4795	chr1:149580997:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	177	0	0.04	1	0.0184	0.046	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0644	TRUE	2	2	0	2	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	3	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0276	TRUE	347	1186	183	220	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	1	8	GPR141	2228	chr7:37724901:+	NME8	18673	chr7:37902998:+	ONLY_REF_SPLICE	YES	54	16	0.14	0.36	0.0092	0.0736	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.36	0.0828	FALSE	0	0	0	2	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	3	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0276	FALSE	0	26	0	50	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	3	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0276	FALSE	272	151	14	158	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	1	7	GPR141	2228	chr7:37724901:+	NME8	22989	chr7:37916434:+	ONLY_REF_SPLICE	NO	54	30	0.13	0.21	0.0092	0.0644	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.21	0.0736	FALSE	1	0	0	2	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	1	6	GPR141	2228	chr7:37724901:+	NME8	24165	chr7:37923905:+	ONLY_REF_SPLICE	YES	54	25	0.11	0.22	0.0092	0.0552	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.22	0.0644	FALSE	3	3	0	3	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0184	0.0092	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0276	FALSE	515	4851	409	746	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHMP3--GPR141	2	0	CHMP3	4551	chr2:86790427:-	GPR141	28779	chr7:37779982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	CHMP3->charged_multivesicular_body_protein_3,chr2:86730554-86948245:-,GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERC1--RP11-114G22.1	2	0	ERC1	26314	chr12:1399178:+	RP11-114G22.1	51880	chr12:23040898:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+,RP11-114G22.1->chr12:22852793-23327057:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPC--NCOA6	2	0	HNRNPC	1197	chr14:21737457:-	NCOA6	34315	chr20:33338322:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2),NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--HSPA9	2	0	RCC1	2175	chr1:28834672:+	HSPA9	27823	chr5:137895780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RSBN1--LRIF1	2	0	RSBN1	1767	chr1:114354332:-	LRIF1	18322	chr1:111495437:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	RSBN1->chr1:114304454-114355098:-,round_spermatid_basic_protein_1,LRIF1->chr1:111489807-111506701:-,ligand_dependent_nuclear_receptor_interacting_factor_1	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUCO--CEP350	2	0	SUCO	2149	chr1:172502637:+	CEP350	32637	chr1:179955304:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	SUCO->SUN_domain_containing_ossification_factor,chr1:172501489-172580971:+,CEP350->centrosomal_protein_350,chr1:179923873-180084015:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP48--LDLR	2	0	USP48	8734	chr1:22074631:-	LDLR	54704	chr19:11233850:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	USP48->chr1:22004791-22110099:-,ubiquitin_specific_peptidase_48,LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	NO	173	139	0.01	0.01	0.0092	0.0092	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0184	FALSE	16	22	0	27	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC12A--PGBD2	1	1	CLEC12A	6135	chr12:10134728:+	PGBD2	17571	chr1:249211478:+	ONLY_REF_SPLICE	YES	312	26	0.01	0.07	0.0092	0.0092	CLEC12A->C-type_lectin_domain_family_12_member_A,chr12:10103915-10148293:+,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.07	0.0184	FALSE	0	1	0	1	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR141--NME8	1	1	GPR141	2513	chr7:37725186:+	NME8	29703	chr7:37939846:+	ONLY_REF_SPLICE	YES	71	16	0.03	0.11	0.0092	0.0092	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[14809],GPR141->G_protein-coupled_receptor_141,chr7:37723399-37873390:+,NME8->NME/NM23_family_member_8,chr7:37888199-37940003:+	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.11	0.0184	FALSE	1	0	0	1	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL32--RP11-473M20.9	1	1	IL32	3393	chr16:3118240:+	RP11-473M20.9	10459	chr16:3131087:-	ONLY_REF_SPLICE	YES	216	300	0.01	0.01	0.0092	0.0092	NEIGHBORS_OVERLAP:+:-:[4996],IL32->chr16:3115298-3131908:+,interleukin_32,RP11-473M20.9->chr16:3126912-3137101:-	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0184	FALSE	4	0	0	2	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--RAC2	1	1	OAZ1	1259	chr19:2269743:+	RAC2	13881	chr22:37622843:-	ONLY_REF_SPLICE	YES	3340	1136	0	0	0.0092	0.0092	GTEx&tcga_normals:8/3694=0.22%,GTEx:0.08%,GTEx_FI:{Whole_Blood=[count:17=pct:12.9],Blood=[count:13=pct:7.5]},GTEx_v2:{count=20;pct=0.23%;dist=Whole_Blood=20},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,RAC2->Oncogene{Bushman},chr22:37621301-37640488:-,ras-related_C3_botulinum_toxin_substrate_2_(rho_family,_small_GTP_binding_protein_Rac2)	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0184	FALSE	28	1	0	2	0	FALSE	ACH-000218
PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0092	0.0092	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PL21_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0184	TRUE	62	24	1	171	0	FALSE	ACH-000218
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	291	297	CTNND1	2585	chr11:57529518:+	SSRP1	31591	chr11:57102122:-	ONLY_REF_SPLICE	YES	163	295	0.78	0.67	3.5943	3.6685	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.67	0.78	7.2628	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	162	400	CTNND1	2585	chr11:57529518:+	SSRP1	30999	chr11:57102714:-	ONLY_REF_SPLICE	YES	163	19	0.78	0.97	2.001	4.9407	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.78	0.97	6.9417	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	39	302	CTNND1	2658	chr11:57529591:+	SSRP1	31591	chr11:57102122:-	ONLY_REF_SPLICE	YES	190	295	0.64	0.54	0.4817	3.7302	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.54	0.64	4.2119	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	9	406	CTNND1	2658	chr11:57529591:+	SSRP1	30999	chr11:57102714:-	ONLY_REF_SPLICE	YES	190	19	0.69	0.96	0.1112	5.0148	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.69	0.96	5.126	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	7	402	CTNND1	2584	chr11:57529517:+	SSRP1	30991	chr11:57102722:-	INCL_NON_REF_SPLICE	YES	163	19	0.72	0.96	0.0865	4.9654	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.72	0.96	5.0519	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	5	401	CTNND1	2607	chr11:57529540:+	SSRP1	30999	chr11:57102714:-	ONLY_REF_SPLICE	YES	190	19	0.68	0.96	0.0618	4.953	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.68	0.96	5.0148	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	5	298	CTNND1	2607	chr11:57529540:+	SSRP1	31591	chr11:57102122:-	ONLY_REF_SPLICE	YES	190	295	0.61	0.51	0.0618	3.6808	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.51	0.61	3.7426	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	67	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8276	0.3211	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	1.1487	TRUE	508	994	45	981	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	43	74	CTNND1	2585	chr11:57529518:+	SSRP1	32699	chr11:57101014:-	ONLY_REF_SPLICE	YES	163	606	0.42	0.16	0.5311	0.914	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.16	0.42	1.4451	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	SOCS5--PREPL	49	32	SOCS5	1498	chr2:46926588:+	PREPL	15547	chr2:44573529:-	ONLY_REF_SPLICE	YES	79	31	0.51	0.72	0.6052	0.3953	SOCS5->chr2:46926091-46990268:+,suppressor_of_cytokine_signaling_5,PREPL->chr2:44543420-44589001:-,prolyl_endopeptidase-like	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.51	0.72	1.0005	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	DPH5--SLC30A7	48	24	DPH5	4639	chr1:101487197:-	SLC30A7	26984	chr1:101440366:+	ONLY_REF_SPLICE	YES	33	22	0.69	0.77	0.5929	0.2964	LOCAL_INVERSION:-:+:[7870],DPH5->chr1:101455179-101491644:-,diphthamide_biosynthesis_5,SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.69	0.77	0.8893	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	KANSL2--TMEM178B	45	12	KANSL2	3419	chr12:49073438:-	TMEM178B	18604	chr7:140912391:+	ONLY_REF_SPLICE	YES	45	1	0.56	0.98	0.5558	0.1482	KANSL2->KAT8_regulatory_NSL_complex_subunit_2,chr12:49047184-49076021:-,TMEM178B->chr7:140774032-141180180:+,transmembrane_protein_178B	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.56	0.98	0.704	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	41	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	214	2	0.16	0.95	0.5064	0.0124	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.16	0.95	0.5188	TRUE	519	3926	326	965	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	35	17	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	21	1	0.71	0.4323	0.21	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.71	1	0.6423	TRUE	458	1351	185	561	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	39	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4817	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.4817	TRUE	7	10	0	216	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	WNT5B--ADIPOR2	35	3	WNT5B	2060	chr12:1640116:+	ADIPOR2	21717	chr12:1863424:+	ONLY_REF_SPLICE	YES	5	21	0.88	0.64	0.4323	0.0371	NEIGHBORS[41331],WNT5B->Wnt_family_member_5B,chr12:1639057-1756409:+,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.64	0.88	0.4694	FALSE	0	0	0	1	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	27	6	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.85	1	0.3335	0.0741	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.85	1	0.4076	FALSE	292	1546	117	613	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	25	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3088	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.3088	TRUE	402	216	10	229	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTNND1--SSRP1	5	75	CTNND1	2658	chr11:57529591:+	SSRP1	32699	chr11:57101014:-	ONLY_REF_SPLICE	YES	190	606	0.3	0.12	0.0618	0.9264	CTNND1->Oncogene{Bushman},catenin_delta_1,chr11:57520715-57587018:+,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.12	0.3	0.9882	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	21	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	84	1	0.26	0.2594	0.1112	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.26	1	0.3706	TRUE	465	1949	224	605	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	16	11	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	61	0	0.31	1	0.1976	0.1359	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.3335	FALSE	56	216	12	147	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	KANSL2--TMEM178B	14	12	KANSL2	4038	chr12:49072819:-	TMEM178B	18604	chr7:140912391:+	ONLY_REF_SPLICE	YES	43	1	0.38	0.96	0.1729	0.1482	KANSL2->KAT8_regulatory_NSL_complex_subunit_2,chr12:49047184-49076021:-,TMEM178B->chr7:140774032-141180180:+,transmembrane_protein_178B	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.38	0.96	0.3211	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	15	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1853	0.0741	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.2594	FALSE	499	1288	110	792	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	12	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	45	26	0.36	0.49	0.1482	0.1606	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.36	0.49	0.3088	TRUE	267	562	48	632	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	13	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1606	0.1112	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.2718	FALSE	499	1288	110	792	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	PRKCE--MCFD2	14	5	PRKCE	24500	chr2:46231777:+	MCFD2	48531	chr2:47136316:-	ONLY_REF_SPLICE	YES	20	26	0.49	0.42	0.1729	0.0618	PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,MCFD2->chr2:47129009-47168994:-,multiple_coagulation_factor_deficiency_2	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.42	0.49	0.2347	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	11	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	44	27	0.29	0.4	0.1359	0.0865	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.29	0.4	0.2224	TRUE	267	562	48	632	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	9	15	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	23	0	0.51	1	0.1112	0.1853	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.51	1	0.2965	FALSE	164	806	69	479	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	11	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1359	0.0494	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.1853	FALSE	499	1288	110	792	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	7	11	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	28	0	0.39	1	0.0865	0.1359	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.39	1	0.2224	FALSE	125	705	46	456	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	SCFD2--KIT	9	2	SCFD2	6695	chr4:54011500:-	KIT	16341	chr4:55561678:+	ONLY_REF_SPLICE	YES	57	12	0.16	0.48	0.1112	0.0247	SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,KIT->ArcherDX_panel,FoundationOne_panel,KIT_proto-oncogene_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr4:55524085-55606881:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.16	0.48	0.1359	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2212	0	0	1	0.1112	0.0124	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	42MGBA_CENTRAL_NERVOUS_SYSTEM	0	1	0.1236	FALSE	13	9	0	364	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	DDB1--DLG2	5	12	DDB1	7434	chr11:61096835:-	DLG2	32473	chr11:85337797:-	ONLY_REF_SPLICE	YES	173	2	0.09	0.89	0.0618	0.1482	DDB1->chr11:61066923-61110068:-,damage_specific_DNA_binding_protein_1,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.09	0.89	0.21	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	7	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0865	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0865	TRUE	0	0	0	434	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	7	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0865	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0865	TRUE	0	0	0	434	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	PCBP1-AS1--MTA3	6	3	PCBP1-AS1	16642	chr2:70278335:-	MTA3	53963	chr2:42909541:+	ONLY_REF_SPLICE	YES	14	37	0.39	0.2	0.0741	0.0371	PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.2	0.39	0.1112	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CAMTA1--CAMTA1-IT1	6	1	CAMTA1	13213	chr1:7309686:+	CAMTA1-IT1	42018	chr1:7430142:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0741	0.0124	NEIGHBORS_OVERLAP:+:+:[1328],CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+,CAMTA1-IT1->CAMTA1_intronic_transcript_1,chr1:7429003-7430331:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.0865	FALSE	5	23	1	1	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	6	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	3787	1	0	0.88	0.0741	0.0124	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	42MGBA_CENTRAL_NERVOUS_SYSTEM	0	0.88	0.0865	FALSE	1	0	0	97	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	3	13	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	14	0	0.53	1	0.0371	0.1606	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.53	1	0.1977	FALSE	21	45	1	60	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	DDB1--DLG2	5	2	DDB1	4222	chr11:61100380:-	DLG2	32473	chr11:85337797:-	ONLY_REF_SPLICE	YES	229	2	0.03	0.78	0.0618	0.0247	DDB1->chr11:61066923-61110068:-,damage_specific_DNA_binding_protein_1,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.03	0.78	0.0865	TRUE	0	0	0	1	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	C20orf27--MT-ND4L	5	1	C20orf27	7217	chr20:3734540:-	MT-ND4L	10604	chrM:10471:+	INCL_NON_REF_SPLICE	YES	231	0	0.03	1	0.0618	0.0124	C20orf27->chr20:3734155-3749034:-,chromosome_20_open_reading_frame_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0742	FALSE	0	0	0	6	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	5	1	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	3848	2	0	0.75	0.0618	0.0124	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	42MGBA_CENTRAL_NERVOUS_SYSTEM	0	0.75	0.0742	FALSE	1	0	0	97	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CTD-2231H16.1--AHRR	5	0	CTD-2231H16.1	2324	chr5:113563:+	AHRR	17435	chr5:422844:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0618	0	CTD-2231H16.1->chr5:92266-139978:+,AHRR->aryl-hydrocarbon_receptor_repressor,chr5:304291-438406:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0618	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	4	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0494	0.0494	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.0988	FALSE	515	4851	409	746	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	VIM--SERPINH1	5	0	VIM	2119	chr10:17271376:+	SERPINH1	19135	chr11:75282926:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0618	0	VIM->chr10:17270258-17279592:+,vimentin,SERPINH1->chr11:75273101-75283828:+,serpin_family_H_member_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0618	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	WNT5B--ADIPOR2	4	4	WNT5B	13010	chr12:1755463:+	ADIPOR2	21717	chr12:1863424:+	INCL_NON_REF_SPLICE	YES	67	21	0.11	0.28	0.0494	0.0494	NEIGHBORS[41331],WNT5B->Wnt_family_member_5B,chr12:1639057-1756409:+,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.11	0.28	0.0988	FALSE	0	0	0	1	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	WNT5B--ADIPOR2	4	3	WNT5B	2060	chr12:1640116:+	ADIPOR2	19288	chr12:1812052:+	ONLY_REF_SPLICE	YES	5	24	0.58	0.23	0.0494	0.0371	NEIGHBORS[41331],WNT5B->Wnt_family_member_5B,chr12:1639057-1756409:+,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.23	0.58	0.0865	FALSE	0	0	0	1	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	SMURF1--C7orf33	4	0	SMURF1	1375	chr7:98741349:-	C7orf33	30494	chr7:148311134:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0494	0	SMURF1->SMAD_specific_E3_ubiquitin_protein_ligase_1,chr7:98625061-98741723:-,C7orf33->chr7:148287657-148312952:+,chromosome_7_open_reading_frame_33	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0494	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	SOCS5--PREPL	3	3	SOCS5	1160	chr2:46926250:+	PREPL	15547	chr2:44573529:-	ONLY_REF_SPLICE	YES	4	31	0.6	0.16	0.0371	0.0371	SOCS5->chr2:46926091-46990268:+,suppressor_of_cytokine_signaling_5,PREPL->chr2:44543420-44589001:-,prolyl_endopeptidase-like	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.16	0.6	0.0742	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0247	0.0741	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.0988	FALSE	407	2205	196	549	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	VIM-AS1--FTL	3	2	VIM-AS1	1589	chr10:17271396:-	FTL	9803	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	2975	0	0	1	0.0371	0.0247	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	42MGBA_CENTRAL_NERVOUS_SYSTEM	0	1	0.0618	FALSE	0	0	0	5	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CDH13--RP11-22H5.2	3	1	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	115	0	0.03	1	0.0371	0.0124	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0495	FALSE	14	31	0	36	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	SPARC--THBS1	3	1	SPARC	8426	chr5:151051177:-	THBS1	27163	chr15:39881462:+	INCL_NON_REF_SPLICE	YES	6066	4820	0	0	0.0371	0.0124	SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0	0	0.0495	FALSE	0	0	0	1	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	SPARC--THBS1	3	1	SPARC	8469	chr5:151051134:-	THBS1	27707	chr15:39882006:+	ONLY_REF_SPLICE	YES	6747	4992	0	0	0.0371	0.0124	SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0	0	0.0495	FALSE	0	0	0	1	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	DPH5--SLC30A7	1	8	DPH5	1780	chr1:101490865:-	SLC30A7	26984	chr1:101440366:+	ONLY_REF_SPLICE	YES	85	22	0.1	0.29	0.0124	0.0988	LOCAL_INVERSION:-:+:[7870],DPH5->chr1:101455179-101491644:-,diphthamide_biosynthesis_5,SLC30A7->chr1:101361632-101447309:+,solute_carrier_family_30_member_7	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.1	0.29	0.1112	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	3	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0371	FALSE	13	9	0	364	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.88	1	0.0124	0.0741	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.0865	FALSE	192	492	57	212	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	28	10	0.1	0.23	0.0247	0.0124	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.1	0.23	0.0371	FALSE	7	44	2	41	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	GNE--TAF12	2	0	GNE	1163	chr9:36276891:-	TAF12	22950	chr1:28948677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	GNE->chr9:36214438-36277053:-,glucosamine_(UDP-N-acetyl)-2-epimerase/N-acetylmannosamine_kinase,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0247	FALSE	25	145	6	90	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	STK38L--CACNA2D4	2	0	STK38L	1365	chr12:27397265:+	CACNA2D4	30607	chr12:1996235:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	42MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	PCBP1-AS1--MTA3	1	2	PCBP1-AS1	4300	chr2:70312679:-	MTA3	53963	chr2:42909541:+	ONLY_REF_SPLICE	YES	10	37	0.23	0.07	0.0124	0.0247	PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.07	0.23	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	PPP1R12C--CNN2	1	2	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	110	1063	0.03	0	0.0124	0.0247	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0371	FALSE	35	34	3	30	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-351I24.1--SBF2	1	2	RP11-351I24.1	1409	chr11:10324843:-	SBF2	30308	chr11:9917558:-	ONLY_REF_SPLICE	YES	0	21	1	0.12	0.0124	0.0247	NEIGHBORS[8450],RP11-351I24.1->chr11:10324204-10325251:-,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.12	1	0.0371	FALSE	0	0	0	1	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-351I24.1--SBF2	1	2	RP11-351I24.1	1409	chr11:10324843:-	SBF2	6242	chr11:10215534:-	ONLY_REF_SPLICE	YES	0	3	1	0.5	0.0124	0.0247	NEIGHBORS[8450],RP11-351I24.1->chr11:10324204-10325251:-,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.0371	FALSE	0	0	0	1	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CAMTA1--CAMTA1-IT1	1	1	CAMTA1	12077	chr1:7151431:+	CAMTA1-IT1	42018	chr1:7430142:+	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0124	0.0124	NEIGHBORS_OVERLAP:+:+:[1328],CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+,CAMTA1-IT1->CAMTA1_intronic_transcript_1,chr1:7429003-7430331:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.4	1	0.0248	FALSE	6	24	3	2	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	CDH13--RP11-22H5.2	1	1	CDH13	3588	chr16:82673070:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	128	0	0.02	1	0.0124	0.0124	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0248	FALSE	0	2	0	10	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	COL5A1--COL6A2	1	1	COL5A1	30839	chr9:137671992:+	COL6A2	76681	chr21:47536565:+	ONLY_REF_SPLICE	YES	804	2770	0	0	0.0124	0.0124	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},HGNC_GENEFAM,PROTCLUST,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	42MGBA_CENTRAL_NERVOUS_SYSTEM	0	0	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	FADS2--TMEM258	1	1	FADS2	1049	chr11:61560500:+	TMEM258	29821	chr11:61558074:-	ONLY_REF_SPLICE	YES	0	4	1	0.33	0.0124	0.0124	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[178],FADS2->chr11:61560452-61634826:+,fatty_acid_desaturase_2,TMEM258->chr11:61535973-61560274:-,transmembrane_protein_258	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.0248	TRUE	0	2	0	5	2	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	FMN1--SCG5	1	1	FMN1	27900	chr15:33180373:-	SCG5	54477	chr15:32983911:+	ONLY_REF_SPLICE	YES	44	922	0.04	0	0.0124	0.0124	GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hippocampus=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cortex=1},LOCAL_INVERSION:-:+:[68448],FMN1->chr15:33057747-33486897:-,formin_1,SCG5->chr15:32933877-32989299:+,secretogranin_V	42MGBA_CENTRAL_NERVOUS_SYSTEM	0	0.04	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	FMN1--SCG5	1	1	FMN1	30151	chr15:33149216:-	SCG5	52073	chr15:32971967:+	ONLY_REF_SPLICE	YES	45	1	0.04	0.67	0.0124	0.0124	GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hippocampus=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cortex=1},LOCAL_INVERSION:-:+:[68448],FMN1->chr15:33057747-33486897:-,formin_1,SCG5->chr15:32933877-32989299:+,secretogranin_V	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.04	0.67	0.0248	TRUE	0	1	0	1	0	TRUE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	FMN1--SCG5	1	1	FMN1	30151	chr15:33149216:-	SCG5	54477	chr15:32983911:+	ONLY_REF_SPLICE	YES	45	922	0.04	0	0.0124	0.0124	GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hippocampus=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cortex=1},LOCAL_INVERSION:-:+:[68448],FMN1->chr15:33057747-33486897:-,formin_1,SCG5->chr15:32933877-32989299:+,secretogranin_V	42MGBA_CENTRAL_NERVOUS_SYSTEM	0	0.04	0.0248	FALSE	0	1	0	1	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	MACROD1--AHNAK	1	1	MACROD1	3565	chr11:63918711:-	AHNAK	17669	chr11:62303570:-	ONLY_REF_SPLICE	YES	62	343	0.03	0.01	0.0124	0.0124	MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-,AHNAK->AHNAK_nucleoprotein,chr11:62201016-62323707:-	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	MEG3--SIPA1L1	1	1	MEG3	2481	chr14:101292554:+	SIPA1L1	29633	chr14:71880665:+	ONLY_REF_SPLICE	NO	110	12	0.02	0.14	0.0124	0.0124	MEG3->Oncogene{Bushman},chr14:101245747-101327368:+,maternally_expressed_3_(non-protein_coding),SIPA1L1->chr14:71787166-72207946:+,signal_induced_proliferation_associated_1_like_1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.02	0.14	0.0248	TRUE	0	0	0	1	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	NRAS--CSDE1	1	1	NRAS	3024	chr1:115256421:-	CSDE1	34139	chr1:115261366:-	ONLY_REF_SPLICE	YES	548	1276	0	0	0.0124	0.0124	LOCAL_REARRANGEMENT:-:[19],NRAS->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr1:115247090-115259515:-,neuroblastoma_RAS_viral_oncogene_homolog,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	42MGBA_CENTRAL_NERVOUS_SYSTEM	0	0	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	SDCCAG8--CEP170	1	1	SDCCAG8	1223	chr1:243419542:+	CEP170	34466	chr1:243388623:-	ONLY_REF_SPLICE	YES	21	70	0.09	0.03	0.0124	0.0124	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[670],SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.03	0.09	0.0248	TRUE	0	3	1	3	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	VIM-AS1--SPARC	1	1	VIM-AS1	1641	chr10:17271344:-	SPARC	20533	chr5:151046070:-	ONLY_REF_SPLICE	YES	2	6206	0.5	0	0.0124	0.0124	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,SPARC->chr5:151040657-151066726:-,secreted_protein_acidic_and_cysteine_rich	42MGBA_CENTRAL_NERVOUS_SYSTEM	0	0.5	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000323
42MGBA_CENTRAL_NERVOUS_SYSTEM	WNT5B--ADIPOR2	1	1	WNT5B	1119	chr12:1639175:+	ADIPOR2	21717	chr12:1863424:+	ONLY_REF_SPLICE	NO	1	21	0.67	0.09	0.0124	0.0124	NEIGHBORS[41331],WNT5B->Wnt_family_member_5B,chr12:1639057-1756409:+,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	42MGBA_CENTRAL_NERVOUS_SYSTEM	0.09	0.67	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000323
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	70	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9696	0.0831	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0527	FALSE	499	1288	110	792	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	54	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.748	0.1524	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9004	TRUE	508	994	45	981	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SFPQ--ZFP36L1	44	35	SFPQ	11167	chr1:35646736:-	ZFP36L1	24268	chr14:69257209:-	ONLY_REF_SPLICE	YES	49	5	0.62	0.94	0.6095	0.4848	SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,ZFP36L1->Oncogene{Bushman},ZFP36_ring_finger_protein-like_1,chr14:69254377-69263190:-	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.94	1.0943	TRUE	0	0	0	1	0	TRUE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	44	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6095	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6095	TRUE	0	0	0	518	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	32	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4433	0.2216	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6649	FALSE	499	1288	110	792	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SFPQ--ZFP36L1	27	25	SFPQ	7033	chr1:35652602:-	ZFP36L1	24268	chr14:69257209:-	ONLY_REF_SPLICE	YES	361	5	0.13	0.91	0.374	0.3463	SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,ZFP36L1->Oncogene{Bushman},ZFP36_ring_finger_protein-like_1,chr14:69254377-69263190:-	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.91	0.7203	TRUE	0	0	0	1	0	TRUE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	31	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4294	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4294	TRUE	519	3926	326	965	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	26	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3602	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3602	FALSE	462	80	0	856	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	21	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2909	0.1108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4017	FALSE	499	1288	110	792	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	18	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	23	19	0.55	0.6	0.2493	0.1385	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.6	0.3878	TRUE	267	562	48	632	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	12	32	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1662	0.4433	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6095	FALSE	499	1288	110	792	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	28	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0831	0.3879	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.471	FALSE	499	1288	110	792	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	8	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	22	19	0.42	0.46	0.1108	0.1108	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.46	0.2216	TRUE	267	562	48	632	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	27	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0.374	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4156	FALSE	499	1288	110	792	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP1-249H1.4--RP11-367G18.1	8	2	RP1-249H1.4	2789	chr6:114191469:-	RP11-367G18.1	10356	chr6:113948877:-	INCL_NON_REF_SPLICE	YES	39	0	0.2	1	0.1108	0.0277	RP1-249H1.4->chr6:114189178-114194516:-,RP11-367G18.1->chr6:113944737-113971276:-	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.1385	TRUE	0	0	0	3	0	TRUE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	0	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0831	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0831	FALSE	462	80	0	856	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGFR2--COL14A1	4	5	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	0	1	1	0.9	0.0554	0.0693	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.1247	TRUE	0	0	0	32	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	4	MT-ND6	1034	chrM:14640:-	MT-TE	4533	chrM:14735:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0.0554	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1108	FALSE	499	1288	110	792	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0554	FALSE	499	1288	110	792	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0554	FALSE	462	80	0	856	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0554	FALSE	462	80	0	856	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0554	FALSE	462	80	0	856	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--CHMP1A	3	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0416	TRUE	95	74	6	34	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0416	FALSE	499	1288	110	792	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1049	chrM:5607:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0416	FALSE	462	80	0	856	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	3	0	ZNF654	1688	chr3:88188941:+	HMGB2	12568	chr4:174253271:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0416	TRUE	0	0	0	518	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB2--ARHGAP15	2	1	ZEB2	5479	chr2:145274845:-	ARHGAP15	58682	chr2:144313977:+	ONLY_REF_SPLICE	YES	22	235	0.12	0.01	0.0277	0.0139	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.08%,GTEx_FI:{Blood=[count:17=pct:9.8],Whole_Blood=[count:16=pct:12.1],Nerve=[count:6=pct:3.5],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=23,Nerve_-_Tibial=9,Spleen=4,Lung=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.12	0.0416	FALSE	6	1	1	2	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--CHMP1A	2	0	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0277	TRUE	13	55	3	29	0	FALSE	ACH-000557
AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GOLGB1--IQCB1	1	1	GOLGB1	2844	chr3:121449723:-	IQCB1	37864	chr3:121545027:-	ONLY_REF_SPLICE	YES	8	51	0.2	0.04	0.0139	0.0139	LOCAL_REARRANGEMENT:-:[20008],GOLGB1->chr3:121382046-121468602:-,golgin_B1,IQCB1->IQ_motif_containing_B1,chr3:121488610-121553926:-	AML193_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.2	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000557
NCIH1618_LUNG	TIMM23B--LINC00843	102	39	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3805	0.5278	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1618_LUNG	1	1	1.9083	TRUE	508	994	45	981	0	FALSE	ACH-000179
NCIH1618_LUNG	TIMM23--RP11-464F9.1	51	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6902	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1618_LUNG	1	1	0.6902	TRUE	519	3926	326	965	0	FALSE	ACH-000179
NCIH1618_LUNG	ZNF654--HMGB2	48	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6496	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1618_LUNG	1	1	0.6496	TRUE	0	0	0	518	0	FALSE	ACH-000179
NCIH1618_LUNG	RP11-123O10.4--GRIP1	40	15	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5414	0.203	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1618_LUNG	1	1	0.7444	FALSE	416	2512	207	587	0	FALSE	ACH-000179
NCIH1618_LUNG	MAF--RP11-679B19.2	30	13	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.406	0.1759	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	NCIH1618_LUNG	1	1	0.5819	TRUE	48	25	3	38	0	FALSE	ACH-000179
NCIH1618_LUNG	OR51S1--TP53I11	27	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3654	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH1618_LUNG	1	1	0.3654	TRUE	402	216	10	229	0	FALSE	ACH-000179
NCIH1618_LUNG	RP11-319G9.5--WWOX	18	2	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	36	1	0.36	0.2436	0.0271	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	NCIH1618_LUNG	0.36	1	0.2707	FALSE	154	425	28	76	0	FALSE	ACH-000179
NCIH1618_LUNG	RP11-444D3.1--SOX5	17	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	2	1	0.91	0.2301	0.0541	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1618_LUNG	0.91	1	0.2842	TRUE	477	1352	189	275	0	FALSE	ACH-000179
NCIH1618_LUNG	RP4-565E6.1--HYDIN	15	10	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.203	0.1353	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1618_LUNG	0.96	1	0.3383	TRUE	456	1387	91	133	0	FALSE	ACH-000179
NCIH1618_LUNG	TET3--DGUOK	14	6	TET3	1454	chr2:74230293:+	DGUOK	27491	chr2:74173846:+	ONLY_REF_SPLICE	YES	11	325	0.65	0.06	0.1895	0.0812	LOCAL_REARRANGEMENT:+:[43752],TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3,DGUOK->chr2:74153953-74186088:+,deoxyguanosine_kinase	NCIH1618_LUNG	0.06	0.65	0.2707	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	FAM211A--CTB-92J24.3	8	5	FAM211A	2538	chr17:16365572:-	CTB-92J24.3	15624	chr19:24103000:-	ONLY_REF_SPLICE	YES	24	0	0.35	1	0.1083	0.0677	FAM211A->chr17:16344891-16395467:-,CTB-92J24.3->chr19:24101883-24140732:-	NCIH1618_LUNG	0.35	1	0.176	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	RP11-120D5.1--MID1	7	7	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	63	0.88	0.18	0.0947	0.0947	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1618_LUNG	0.18	0.88	0.1894	FALSE	16	356	14	466	0	FALSE	ACH-000179
NCIH1618_LUNG	CASC9--RP11-300E4.2	8	2	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	31	0	0.24	1	0.1083	0.0271	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH1618_LUNG	0.24	1	0.1354	TRUE	0	23	0	19	23	TRUE	ACH-000179
NCIH1618_LUNG	AP003900.6--AC011718.2	7	3	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0947	0.0406	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH1618_LUNG	0.91	1	0.1353	TRUE	0	5	0	45	5	FALSE	ACH-000179
NCIH1618_LUNG	SMARCA4--DNM2	5	7	SMARCA4	20295	chr19:11123788:+	DNM2	61575	chr19:10904396:+	ONLY_REF_SPLICE	YES	561	233	0.02	0.05	0.0677	0.0947	YOSHIHARA_TCGA_num_samples[BRCA:2],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,DNM2->chr19:10828755-10944164:+,dynamin_2	NCIH1618_LUNG	0.02	0.05	0.1624	TRUE	0	0	0	1	0	FALSE	ACH-000179
NCIH1618_LUNG	RP11-680G10.1--GSE1	6	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	65	1	0.11	0.0812	0.0271	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1618_LUNG	0.11	1	0.1083	TRUE	465	1949	224	605	0	FALSE	ACH-000179
NCIH1618_LUNG	AC027612.3--AP000345.1	5	0	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0677	0	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH1618_LUNG	1	1	0.0677	TRUE	0	0	0	11	0	TRUE	ACH-000179
NCIH1618_LUNG	RP11-120D5.1--MID1	3	7	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	2	63	0.83	0.14	0.0406	0.0947	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1618_LUNG	0.14	0.83	0.1353	FALSE	0	9	0	55	0	FALSE	ACH-000179
NCIH1618_LUNG	HSP90AB1--MT-RNR2	4	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1894	0	0	1	0.0541	0.0135	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1618_LUNG	0	1	0.0676	FALSE	13	9	0	364	0	FALSE	ACH-000179
NCIH1618_LUNG	PVT1--SNTB1	4	0	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0541	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH1618_LUNG	1	1	0.0541	TRUE	0	0	0	25	0	FALSE	ACH-000179
NCIH1618_LUNG	TET3--DGUOK	4	0	TET3	1454	chr2:74230293:+	DGUOK	31073	chr2:74185273:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0541	0	LOCAL_REARRANGEMENT:+:[43752],TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3,DGUOK->chr2:74153953-74186088:+,deoxyguanosine_kinase	NCIH1618_LUNG	1	1	0.0541	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	TET3--DGUOK	4	0	TET3	1454	chr2:74230293:+	DGUOK	30052	chr2:74184252:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0541	0	LOCAL_REARRANGEMENT:+:[43752],TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3,DGUOK->chr2:74153953-74186088:+,deoxyguanosine_kinase	NCIH1618_LUNG	1	1	0.0541	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	LINC00299--AC007464.1	3	2	LINC00299	17125	chr2:8200478:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0.0271	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	NCIH1618_LUNG	1	1	0.0677	TRUE	20	19	0	15	0	FALSE	ACH-000179
NCIH1618_LUNG	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1913	0	0	1	0.0406	0.0135	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1618_LUNG	0	1	0.0541	FALSE	13	9	0	364	0	FALSE	ACH-000179
NCIH1618_LUNG	RP11-711M9.1--DGUOK	1	9	RP11-711M9.1	1181	chr2:74213833:+	DGUOK	9137	chr2:74173846:+	ONLY_REF_SPLICE	YES	0	325	1	0.03	0.0135	0.1218	LOCAL_REARRANGEMENT:+:[27565],RP11-711M9.1->chr2:74213653-74220867:+,DGUOK->chr2:74153953-74186088:+,deoxyguanosine_kinase	NCIH1618_LUNG	0.03	1	0.1353	TRUE	0	0	0	1	0	FALSE	ACH-000179
NCIH1618_LUNG	CASC9--RP11-300E4.2	3	0	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH1618_LUNG	1	1	0.0406	TRUE	0	12	0	10	12	TRUE	ACH-000179
NCIH1618_LUNG	GATS--PILRB	3	0	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	NCIH1618_LUNG	1	1	0.0406	TRUE	57	41	2	35	0	FALSE	ACH-000179
NCIH1618_LUNG	RP11-123O10.4--GRIP1	1	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0135	0.1083	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1618_LUNG	1	1	0.1218	FALSE	93	270	15	244	0	FALSE	ACH-000179
NCIH1618_LUNG	RP11-394A14.2--ARNTL	3	0	RP11-394A14.2	4687	chr13:64413882:-	ARNTL	13352	chr11:13331534:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	RP11-394A14.2->chr13:64402973-64418258:-,ARNTL->aryl_hydrocarbon_receptor_nuclear_translocator_like,chr11:13298199-13408813:+	NCIH1618_LUNG	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	RP11-444D3.1--SOX5	2	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.0271	0.0406	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH1618_LUNG	0.71	1	0.0677	TRUE	274	363	69	150	0	FALSE	ACH-000179
NCIH1618_LUNG	DSCR3--TTC3	2	2	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	39	190	0.09	0.02	0.0271	0.0271	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH1618_LUNG	0.02	0.09	0.0542	TRUE	0	9	0	44	1	FALSE	ACH-000179
NCIH1618_LUNG	LINC00299--AC007464.1	2	2	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0.0271	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	NCIH1618_LUNG	1	1	0.0542	TRUE	67	49	0	25	0	FALSE	ACH-000179
NCIH1618_LUNG	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0.0271	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1618_LUNG	1	1	0.0542	FALSE	515	4851	409	746	0	FALSE	ACH-000179
NCIH1618_LUNG	FARP1--STK24	2	1	FARP1	5345	chr13:98865667:+	STK24	73769	chr13:99134575:-	ONLY_REF_SPLICE	YES	171	307	0.02	0.01	0.0271	0.0135	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Aorta=1,Pituitary=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Ovary=1},LOCAL_INVERSION:+:-:[428],FARP1->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_1,chr13:98794816-99102027:+,STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24	NCIH1618_LUNG	0.01	0.02	0.0406	FALSE	0	1	0	2	0	FALSE	ACH-000179
NCIH1618_LUNG	NDUFA4--PHF14	2	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	776	54	0	0.05	0.0271	0.0135	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1618_LUNG	0	0.05	0.0406	FALSE	19	32	3	60	0	FALSE	ACH-000179
NCIH1618_LUNG	RP1-34H18.1--NAV3	2	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0.0135	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH1618_LUNG	1	1	0.0406	TRUE	254	575	65	124	0	FALSE	ACH-000179
NCIH1618_LUNG	YWHAE--CRK	2	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	2147	116	0	0.03	0.0271	0.0135	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NCIH1618_LUNG	0	0.03	0.0406	FALSE	6	50	7	115	0	FALSE	ACH-000179
NCIH1618_LUNG	CUL3--MUS81	2	0	CUL3	8875	chr2:225400245:-	MUS81	37698	chr11:65628146:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3,MUS81->MUS81_structure-specific_endonuclease_subunit,chr11:65624597-65635124:+	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	DGCR5--NARS2	2	0	DGCR5	16324	chr22:19002019:+	NARS2	30714	chr11:78189729:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	DGCR5->DiGeorge_syndrome_critical_region_gene_5_(non-protein_coding),chr22:18958027-19018755:+,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	FUBP1--IVNS1ABP	2	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NCIH1618_LUNG	1	1	0.0271	TRUE	1	4	0	16	0	TRUE	ACH-000179
NCIH1618_LUNG	NDUFA9--CORO7	2	0	NDUFA9	3503	chr12:4764088:+	CORO7	41248	chr16:4409386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	NDUFA9->NADH:ubiquinone_oxidoreductase_subunit_A9,chr12:4758261-4798454:+,CORO7->chr16:4404543-4475706:-,coronin_7	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	PRPSAP2--MGEA5	2	0	PRPSAP2	3378	chr17:18759742:+	MGEA5	44529	chr10:103547280:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	PRPSAP2->chr17:18743398-18834581:+,phosphoribosyl_pyrophosphate_synthetase_associated_protein_2,MGEA5->chr10:103544200-103578696:-,meningioma_expressed_antigen_5_(hyaluronidase)	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	PYGO2--MFF	2	0	PYGO2	1335	chr1:154935995:-	MFF	20423	chr2:228211942:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	PYGO2->chr1:154929502-154936329:-,pygopus_family_PHD_finger_2,MFF->chr2:228189867-228222550:+,mitochondrial_fission_factor	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	RP11-123O10.4--TBC1D30	2	0	RP11-123O10.4	1113	chr12:67462830:-	TBC1D30	16186	chr12:65230270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	RP11-123O10.4->chr12:67285656-67462942:-,TBC1D30->TBC1_domain_family_member_30,chr12:65174589-65274812:+	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	RUNX1T1--IVNS1ABP	2	0	RUNX1T1	6399	chr8:93088193:-	IVNS1ABP	44196	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	RUNX1T1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RUNX1_translocation_partner_1,chr8:92967203-93115514:-,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	SSR2--TMEM70	2	0	SSR2	4941	chr1:155984752:-	TMEM70	18498	chr8:74893390:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	SSR2->chr1:155978839-155990750:-,signal_sequence_receptor,_beta_(translocon-associated_protein_beta),TMEM70->chr8:74884672-74895018:+,transmembrane_protein_70	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	TMEM161B--PTPRM	2	0	TMEM161B	1756	chr5:87564538:-	PTPRM	30214	chr18:7888104:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	TMEM161B->chr5:87485450-87565293:-,transmembrane_protein_161B,PTPRM->chr18:7566780-8406859:+,protein_tyrosine_phosphatase,_receptor_type_M	NCIH1618_LUNG	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000179
NCIH1618_LUNG	TMEM181--DYNLT1	2	0	TMEM181	6914	chr6:159010814:+	DYNLT1	27019	chr6:159058926:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Testis=1},LOCAL_INVERSION:+:-:[1046],TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181,DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1	NCIH1618_LUNG	1	1	0.0271	TRUE	0	5	0	4	0	TRUE	ACH-000179
NCIH1618_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0135	0.0406	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1618_LUNG	1	1	0.0541	FALSE	467	2173	244	435	0	FALSE	ACH-000179
NCIH1618_LUNG	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	16	1	0.16	0.0135	0.0271	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1618_LUNG	0.16	1	0.0406	TRUE	458	1351	185	561	0	FALSE	ACH-000179
NCIH1618_LUNG	RP4-565E6.1--HYDIN	1	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	5	1	0.38	0.0135	0.0271	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1618_LUNG	0.38	1	0.0406	TRUE	84	87	4	41	0	FALSE	ACH-000179
NCIH1618_LUNG	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0135	0.0271	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1618_LUNG	1	1	0.0406	TRUE	62	24	1	171	0	FALSE	ACH-000179
NCIH1618_LUNG	AC027612.3--AP000345.1	1	1	AC027612.3	3881	chr2:91893844:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0135	0.0135	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH1618_LUNG	1	1	0.027	TRUE	0	0	0	11	0	TRUE	ACH-000179
NCIH1618_LUNG	CTCF--GFOD2	1	1	CTCF	2435	chr16:67605167:+	GFOD2	18866	chr16:67719705:-	ONLY_REF_SPLICE	YES	127	97	0.02	0.02	0.0135	0.0135	LOCAL_INVERSION:+:-:[35348],CTCF->ArcherDX_panel,CCCTC-binding_factor,FoundationOne_panel,chr16:67596310-67673086:+,GFOD2->chr16:67708434-67753324:-,glucose-fructose_oxidoreductase_domain_containing_2	NCIH1618_LUNG	0.02	0.02	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000179
NCIH1618_LUNG	FARP1--STK24	1	1	FARP1	5345	chr13:98865667:+	STK24	70323	chr13:99171727:-	ONLY_REF_SPLICE	YES	171	18	0.01	0.1	0.0135	0.0135	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Aorta=1,Pituitary=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Ovary=1},LOCAL_INVERSION:+:-:[428],FARP1->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_1,chr13:98794816-99102027:+,STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24	NCIH1618_LUNG	0.01	0.1	0.027	FALSE	0	6	1	1	1	FALSE	ACH-000179
NCIH1618_LUNG	GDAP1--RP11-758M4.1	1	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	269	0	0.01	1	0.0135	0.0135	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH1618_LUNG	0.01	1	0.027	FALSE	7	28	0	43	0	FALSE	ACH-000179
NCIH1618_LUNG	LYPLAL1--RRP15	1	1	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	YES	55	56	0.04	0.03	0.0135	0.0135	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	NCIH1618_LUNG	0.03	0.04	0.027	TRUE	0	12	0	13	2	TRUE	ACH-000179
NCIH1618_LUNG	MBNL3--HMGB3	1	1	MBNL3	1155	chrX:131623842:-	HMGB3	30256	chrX:150154068:+	ONLY_REF_SPLICE	YES	69	50	0.03	0.04	0.0135	0.0135	MBNL3->chrX:131503345-131623996:-,muscleblind_like_splicing_regulator_3,HMGB3->chrX:150148982-150159248:+,high_mobility_group_box_3	NCIH1618_LUNG	0.03	0.04	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000179
NCIH1618_LUNG	PRKDC--MCM4	1	1	PRKDC	73255	chr8:48710798:-	MCM4	94918	chr8:48879925:+	ONLY_REF_SPLICE	YES	430	445	0	0	0.0135	0.0135	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[2],PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4	NCIH1618_LUNG	0	0	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000179
NCIH1618_LUNG	RP11-1L12.3--SLC5A12	1	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0135	0.0135	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	NCIH1618_LUNG	0.67	1	0.027	TRUE	3	101	0	60	0	FALSE	ACH-000179
NCIH1618_LUNG	SAFB--VRK1	1	1	SAFB	2445	chr19:5626500:+	VRK1	23288	chr14:97299804:+	ONLY_REF_SPLICE	YES	316	6	0.01	0.25	0.0135	0.0135	SAFB->chr19:5623046-5668489:+,scaffold_attachment_factor_B,VRK1->Oncogene{Bushman},chr14:97263641-97398059:+,vaccinia_related_kinase_1	NCIH1618_LUNG	0.01	0.25	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000179
NCIH1618_LUNG	SF1--FUS	1	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	NO	433	647	0	0	0.0135	0.0135	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH1618_LUNG	0	0	0.027	FALSE	5	20	0	32	0	FALSE	ACH-000179
NCIH1618_LUNG	TULP4--RP11-732M18.3	1	1	TULP4	4900	chr6:158850929:+	RP11-732M18.3	28124	chr6:158703295:+	ONLY_REF_SPLICE	YES	96	0	0.02	1	0.0135	0.0135	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	NCIH1618_LUNG	0.02	1	0.027	TRUE	13	5	1	1	0	FALSE	ACH-000179
NCIH1618_LUNG	TULP4--RP11-732M18.3	1	1	TULP4	2609	chr6:158735300:+	RP11-732M18.3	28124	chr6:158703295:+	ONLY_REF_SPLICE	NO	65	0	0.03	1	0.0135	0.0135	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	NCIH1618_LUNG	0.03	1	0.027	TRUE	121	131	5	12	0	FALSE	ACH-000179
NCIH1618_LUNG	TYMS--TAF6	1	1	TYMS	4286	chr18:662320:+	TAF6	17047	chr7:99711891:-	ONLY_REF_SPLICE	YES	523	121	0	0.02	0.0135	0.0135	TYMS->chr18:657604-673578:+,thymidylate_synthetase,TAF6->TATA-box_binding_protein_associated_factor_6,chr7:99704693-99717464:-	NCIH1618_LUNG	0	0.02	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000179
NCIH1618_LUNG	ZBTB7B--SHC1	1	1	ZBTB7B	1293	chr1:154975419:+	SHC1	14211	chr1:154942675:-	ONLY_REF_SPLICE	YES	68	33	0.03	0.06	0.0135	0.0135	LOCAL_INVERSION:+:-:[28256],ZBTB7B->chr1:154975127-154990998:+,zinc_finger_and_BTB_domain_containing_7B,SHC1->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_transforming_protein_1,chr1:154934774-154946871:-	NCIH1618_LUNG	0.03	0.06	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000179
NCIH1618_LUNG	ZNF627--GNAS	1	1	ZNF627	6303	chr19:11708445:+	GNAS	31097	chr20:57470667:+	ONLY_REF_SPLICE	YES	72	1256	0.03	0	0.0135	0.0135	ZNF627->chr19:11670189-11729950:+,zinc_finger_protein_627,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1618_LUNG	0	0.03	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000179
GCT_SOFT_TISSUE	UBE2L3--COMT	372	82	UBE2L3	4131	chr22:21947245:+	COMT	14843	chr22:19948722:+	ONLY_REF_SPLICE	YES	468	52	0.49	0.9	3.8476	0.8481	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,COMT->catechol-O-methyltransferase,chr22:19929130-19957498:+	GCT_SOFT_TISSUE	0.49	0.9	4.6957	TRUE	0	0	0	1	0	TRUE	ACH-000835
GCT_SOFT_TISSUE	TIMM23B--LINC00843	104	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0757	0.2689	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	GCT_SOFT_TISSUE	0.99	1	1.3446	TRUE	508	994	45	981	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	AP003900.6--AC011718.2	57	3	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	5	0	0.92	1	0.5895	0.031	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	GCT_SOFT_TISSUE	0.92	1	0.6205	TRUE	0	3	0	38	3	FALSE	ACH-000835
GCT_SOFT_TISSUE	TIMM23--RP11-464F9.1	55	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	227	2	0.2	0.97	0.5689	0.0207	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	GCT_SOFT_TISSUE	0.2	0.97	0.5896	TRUE	519	3926	326	965	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	HSP90AB1--MT-RNR2	36	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3264	0	0.01	1	0.3723	0.0103	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GCT_SOFT_TISSUE	0.01	1	0.3826	FALSE	13	9	0	364	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	AC104389.28--HBE1	34	8	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	33	1	0.56	0.98	0.3517	0.0827	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	GCT_SOFT_TISSUE	0.56	0.98	0.4344	TRUE	0	48	0	65	48	FALSE	ACH-000835
GCT_SOFT_TISSUE	C15orf57--CBX3	28	25	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	16	27	0.77	0.66	0.2896	0.2586	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	GCT_SOFT_TISSUE	0.66	0.77	0.5482	TRUE	267	562	48	632	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	PLXDC1--TAF13	33	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3413	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	GCT_SOFT_TISSUE	1	1	0.3413	TRUE	7	10	0	216	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	AP003900.6--AC011718.2	30	5	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	4	0	0.9	1	0.3103	0.0517	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	GCT_SOFT_TISSUE	0.9	1	0.362	TRUE	0	5	0	45	5	FALSE	ACH-000835
GCT_SOFT_TISSUE	C15orf57--CBX3	25	16	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	13	29	0.76	0.59	0.2586	0.1655	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	GCT_SOFT_TISSUE	0.59	0.76	0.4241	TRUE	267	562	48	632	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	REV3L--RPL28	18	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1862	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	GCT_SOFT_TISSUE	1	1	0.1862	TRUE	22	156	2	142	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	RP11-680G10.1--GSE1	14	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	1	1	0.95	0.95	0.1448	0.0414	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GCT_SOFT_TISSUE	0.95	0.95	0.1862	TRUE	458	1351	185	561	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	HSP90AB1--MT-RNR2	14	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3320	0	0	1	0.1448	0.0103	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GCT_SOFT_TISSUE	0	1	0.1551	FALSE	13	9	0	364	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	MT-TA--MT-TC	13	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1345	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GCT_SOFT_TISSUE	1	1	0.1345	FALSE	462	80	0	856	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	RP11-307P5.1--SASH1	12	4	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	13	1	0.55	0.1241	0.0414	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	GCT_SOFT_TISSUE	0.55	1	0.1655	TRUE	0	2	0	37	2	FALSE	ACH-000835
GCT_SOFT_TISSUE	RP11-680G10.1--GSE1	12	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	1	18	0.94	0.45	0.1241	0.031	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GCT_SOFT_TISSUE	0.45	0.94	0.1551	TRUE	465	1949	224	605	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	AC104389.28--HBE1	9	10	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	33	0	0.37	1	0.0931	0.1034	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	GCT_SOFT_TISSUE	0.37	1	0.1965	TRUE	0	35	0	55	35	FALSE	ACH-000835
GCT_SOFT_TISSUE	NRIP1--AF127936.7	10	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.1034	0.0103	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GCT_SOFT_TISSUE	0.92	1	0.1137	FALSE	292	1546	117	613	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	AP003900.6--AC011718.2	10	0	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1034	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	GCT_SOFT_TISSUE	1	1	0.1034	TRUE	0	1	0	21	1	FALSE	ACH-000835
GCT_SOFT_TISSUE	C15orf57--CBX3	5	19	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	13	29	0.65	0.45	0.0517	0.1965	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	GCT_SOFT_TISSUE	0.45	0.65	0.2482	TRUE	267	562	48	632	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	FTH1--ACTB	9	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	4022	1	0	0.92	0.0931	0.0207	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	GCT_SOFT_TISSUE	0	0.92	0.1138	TRUE	1	0	0	97	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	IFT43--CTC-420A11.2	9	1	IFT43	4808	chr14:76488737:+	CTC-420A11.2	17022	chr16:61968016:+	ONLY_REF_SPLICE	YES	31	0	0.24	1	0.0931	0.0103	IFT43->chr14:76368479-76550928:+,intraflagellar_transport_43,CTC-420A11.2->chr16:61952225-61974601:+	GCT_SOFT_TISSUE	0.24	1	0.1034	TRUE	0	0	0	1	0	TRUE	ACH-000835
GCT_SOFT_TISSUE	RP11-476K15.1--CTD-2015H3.2	9	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	3	1	0.77	0.91	0.0931	0.0103	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	GCT_SOFT_TISSUE	0.77	0.91	0.1034	FALSE	0	46	0	73	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	RP11-6N13.1--CTD-2374C24.1	9	0	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0931	0	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	GCT_SOFT_TISSUE	1	1	0.0931	TRUE	5	4	0	46	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	AP000525.9--LA16c-60G3.6	8	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	18	0	0.33	1	0.0827	0.0103	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	GCT_SOFT_TISSUE	0.33	1	0.093	TRUE	0	42	0	133	42	FALSE	ACH-000835
GCT_SOFT_TISSUE	UBE2L3--COMT	8	0	UBE2L3	2429	chr22:21922060:+	COMT	14843	chr22:19948722:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0827	0	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,COMT->catechol-O-methyltransferase,chr22:19929130-19957498:+	GCT_SOFT_TISSUE	1	1	0.0827	TRUE	0	0	0	1	0	TRUE	ACH-000835
GCT_SOFT_TISSUE	MT-TA--MT-TC	7	0	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0724	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GCT_SOFT_TISSUE	1	1	0.0724	FALSE	462	80	0	856	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	VIM--FTH1	7	0	VIM	2124	chr10:17271381:+	FTH1	12402	chr11:61734935:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0724	0	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	GCT_SOFT_TISSUE	1	1	0.0724	TRUE	0	0	0	6	0	TRUE	ACH-000835
GCT_SOFT_TISSUE	RP11-634B7.4--TRIM58	6	3	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	20	1	0.31	0.0621	0.031	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	GCT_SOFT_TISSUE	0.31	1	0.0931	TRUE	158	633	76	73	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	NTAN1--XPO6	6	1	NTAN1	1174	chr16:15149748:-	XPO6	20715	chr16:28181230:-	ONLY_REF_SPLICE	YES	48	92	0.13	0.07	0.0621	0.0103	NTAN1->N-terminal_asparagine_amidase,chr16:15131710-15149921:-,XPO6->chr16:28109300-28223241:-,exportin_6	GCT_SOFT_TISSUE	0.07	0.13	0.0724	TRUE	0	0	0	1	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	EIF1--RPS28	6	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	GCT_SOFT_TISSUE	1	1	0.0621	TRUE	0	0	0	81	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	FTH1--ACTB	5	1	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	4302	0	0	1	0.0517	0.0103	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	GCT_SOFT_TISSUE	0	1	0.062	FALSE	1	0	0	97	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	AP003900.6--AC011718.2	5	0	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	GCT_SOFT_TISSUE	1	1	0.0517	TRUE	0	1	0	26	1	FALSE	ACH-000835
GCT_SOFT_TISSUE	EIF1--RPS28	5	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	GCT_SOFT_TISSUE	1	1	0.0517	TRUE	0	0	0	81	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GCT_SOFT_TISSUE	1	1	0.0517	FALSE	0	0	0	189	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	AP003900.6--AC011718.2	3	6	AP003900.6	1122	chr21:11169841:+	AC011718.2	10127	chr22:20656897:-	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.031	0.0621	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	GCT_SOFT_TISSUE	0.64	1	0.0931	TRUE	0	0	0	11	0	TRUE	ACH-000835
GCT_SOFT_TISSUE	LINC01036--LINC01037	4	1	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0414	0.0103	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	GCT_SOFT_TISSUE	1	1	0.0517	FALSE	0	26	0	50	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	AC104389.28--HBE1	4	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0414	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	GCT_SOFT_TISSUE	1	1	0.0414	TRUE	0	16	0	53	13	FALSE	ACH-000835
GCT_SOFT_TISSUE	UBE2L3--COMT	3	2	UBE2L3	4131	chr22:21947245:+	COMT	17210	chr22:19951089:+	ONLY_REF_SPLICE	YES	468	211	0.01	0.02	0.031	0.0207	UBE2L3->chr22:21903736-21978323:+,ubiquitin_conjugating_enzyme_E2_L3,COMT->catechol-O-methyltransferase,chr22:19929130-19957498:+	GCT_SOFT_TISSUE	0.01	0.02	0.0517	FALSE	0	0	0	1	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.031	0.0103	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GCT_SOFT_TISSUE	0.8	1	0.0413	FALSE	407	2205	196	549	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0.0103	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GCT_SOFT_TISSUE	1	1	0.0413	FALSE	192	492	57	212	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.8	0.67	0.031	0.0103	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GCT_SOFT_TISSUE	0.67	0.8	0.0413	FALSE	515	4851	409	746	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	VIM--FTH1	3	1	VIM	2161	chr10:17271418:+	FTH1	12437	chr11:61734900:-	INCL_NON_REF_SPLICE	YES	5188	4069	0	0	0.031	0.0103	VIM->chr10:17270258-17279592:+,vimentin,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	GCT_SOFT_TISSUE	0	0	0.0413	FALSE	0	0	0	6	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	AC104389.28--HBE1	3	0	AC104389.28	1093	chr11:5526790:-	HBE1	13750	chr11:5291386:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	GCT_SOFT_TISSUE	1	1	0.031	TRUE	0	16	0	53	13	FALSE	ACH-000835
GCT_SOFT_TISSUE	EIF1--RPS28	3	0	EIF1	1087	chr17:39845223:+	RPS28	8126	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	GCT_SOFT_TISSUE	1	1	0.031	TRUE	0	0	0	81	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GCT_SOFT_TISSUE	1	1	0.031	FALSE	462	80	0	856	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.27	1	0.0207	0.0207	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GCT_SOFT_TISSUE	0.27	1	0.0414	FALSE	164	806	69	479	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	LINC01036--LINC01037	2	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0.0103	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	GCT_SOFT_TISSUE	1	1	0.031	FALSE	0	24	0	62	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0207	0.0103	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GCT_SOFT_TISSUE	0.43	1	0.031	FALSE	125	705	46	456	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	RP11-476K15.1--CTD-2015H3.2	2	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0207	0.0103	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	GCT_SOFT_TISSUE	0.5	1	0.031	FALSE	0	46	0	73	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	B4GALT1--MXI1	2	0	B4GALT1	2835	chr9:33135187:-	MXI1	19930	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	GCT_SOFT_TISSUE	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000835
GCT_SOFT_TISSUE	RP11-6N13.1--CTD-2374C24.1	2	0	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	GCT_SOFT_TISSUE	1	1	0.0207	TRUE	1	1	0	17	1	FALSE	ACH-000835
GCT_SOFT_TISSUE	RP11-6N13.1--CTD-2374C24.1	2	0	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	20885	chr5:104311586:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	GCT_SOFT_TISSUE	1	1	0.0207	TRUE	1	2	0	8	1	FALSE	ACH-000835
GCT_SOFT_TISSUE	RP11-6N13.1--CTD-2374C24.1	2	0	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	GCT_SOFT_TISSUE	1	1	0.0207	TRUE	5	12	0	42	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	RP11-307P5.1--SASH1	1	3	RP11-307P5.1	4371	chr6:148054947:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	83	13	0.05	0.24	0.0103	0.031	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	GCT_SOFT_TISSUE	0.05	0.24	0.0413	TRUE	0	0	0	11	0	TRUE	ACH-000835
GCT_SOFT_TISSUE	RP11-307P5.1--SASH1	1	2	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	14	13	0.18	0.19	0.0103	0.0207	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	GCT_SOFT_TISSUE	0.18	0.19	0.031	TRUE	0	0	0	16	0	TRUE	ACH-000835
GCT_SOFT_TISSUE	NTAN1--XPO6	1	1	NTAN1	1174	chr16:15149748:-	XPO6	21875	chr16:28177906:-	ONLY_REF_SPLICE	YES	48	113	0.04	0.02	0.0103	0.0103	NTAN1->N-terminal_asparagine_amidase,chr16:15131710-15149921:-,XPO6->chr16:28109300-28223241:-,exportin_6	GCT_SOFT_TISSUE	0.02	0.04	0.0206	TRUE	0	0	0	1	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	30	1	0.06	0.0103	0.0103	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	GCT_SOFT_TISSUE	0.06	1	0.0206	FALSE	16	356	14	466	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	2	1	0.5	0.0103	0.0103	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GCT_SOFT_TISSUE	0.5	1	0.0206	FALSE	467	2173	244	435	0	FALSE	ACH-000835
GCT_SOFT_TISSUE	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	1286	1	0	0.0103	0.0103	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	GCT_SOFT_TISSUE	0	1	0.0206	FALSE	0	59	0	125	0	FALSE	ACH-000835
NCIH2052_PLEURA	LINC00152--AC093616.4	79	49	LINC00152	14196	chr2:87906288:+	AC093616.4	17233	chr2:88000503:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8367	0.5189	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	NCIH2052_PLEURA	1	1	1.3556	FALSE	0	0	0	14	0	FALSE	ACH-000153
NCIH2052_PLEURA	TIMM23B--LINC00843	61	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.646	0.3177	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2052_PLEURA	1	1	0.9637	TRUE	508	994	45	981	0	FALSE	ACH-000153
NCIH2052_PLEURA	TIMM23--RP11-464F9.1	39	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	296	0	0.13	1	0.413	0.0635	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2052_PLEURA	0.13	1	0.4765	TRUE	519	3926	326	965	0	FALSE	ACH-000153
NCIH2052_PLEURA	MT-TA--MT-TC	36	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3813	0.0212	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2052_PLEURA	1	1	0.4025	FALSE	462	80	0	856	0	FALSE	ACH-000153
NCIH2052_PLEURA	TFG--GPR128	27	13	TFG	5019	chr3:100438902:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	180	0	0.18	1	0.286	0.1377	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	NCIH2052_PLEURA	0.18	1	0.4237	TRUE	12	123	7	17	0	FALSE	ACH-000153
NCIH2052_PLEURA	RP11-680G10.1--GSE1	26	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	12	1	0.71	0.2754	0.0318	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2052_PLEURA	0.71	1	0.3072	TRUE	465	1949	224	605	0	FALSE	ACH-000153
NCIH2052_PLEURA	RAI1--ERI3	23	1	RAI1	1321	chr17:17585107:+	ERI3	28249	chr1:44774073:-	ONLY_REF_SPLICE	YES	2	151	0.92	0.14	0.2436	0.0106	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,ERI3->ERI1_exoribonuclease_family_member_3,chr1:44686742-44820932:-	NCIH2052_PLEURA	0.14	0.92	0.2542	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	KANSL1--ARL17B	15	16	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	27	57	0.53	0.35	0.1589	0.1695	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH2052_PLEURA	0.35	0.53	0.3284	TRUE	181	1564	124	196	0	FALSE	ACH-000153
NCIH2052_PLEURA	RP11-680G10.1--GSE1	13	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1377	0.0424	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2052_PLEURA	1	1	0.1801	TRUE	458	1351	185	561	0	FALSE	ACH-000153
NCIH2052_PLEURA	NRIP1--AF127936.7	10	11	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	100	1	0.17	0.95	0.1059	0.1165	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2052_PLEURA	0.17	0.95	0.2224	FALSE	164	806	69	479	0	FALSE	ACH-000153
NCIH2052_PLEURA	AFAP1--ABLIM2	9	8	AFAP1	1271	chr4:7941383:-	ABLIM2	62065	chr4:7968830:-	ONLY_REF_SPLICE	YES	109	2	0.13	0.89	0.0953	0.0847	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	NCIH2052_PLEURA	0.13	0.89	0.18	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	NRIP1--AF127936.7	10	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	1	0.57	0.92	0.1059	0.0212	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2052_PLEURA	0.57	0.92	0.1271	FALSE	292	1546	117	613	0	FALSE	ACH-000153
NCIH2052_PLEURA	OR51S1--TP53I11	9	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0953	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH2052_PLEURA	1	1	0.0953	TRUE	402	216	10	229	0	FALSE	ACH-000153
NCIH2052_PLEURA	RP11-96H19.1--RP11-446N19.1	7	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.0741	0.0741	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2052_PLEURA	0.93	1	0.1482	FALSE	407	2205	196	549	0	FALSE	ACH-000153
NCIH2052_PLEURA	RP11-123O10.4--GRIP1	8	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0847	0.0212	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2052_PLEURA	0.91	1	0.1059	FALSE	416	2512	207	587	0	FALSE	ACH-000153
NCIH2052_PLEURA	RP11-96H19.1--RP11-446N19.1	7	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0741	0.053	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2052_PLEURA	1	1	0.1271	FALSE	515	4851	409	746	0	FALSE	ACH-000153
NCIH2052_PLEURA	CNTLN--ADAMTSL1	7	2	CNTLN	1444	chr9:17135423:+	ADAMTSL1	46529	chr9:18622241:+	ONLY_REF_SPLICE	YES	17	43	0.35	0.17	0.0741	0.0212	{Klijn_CCL:Other=1},CNTLN->centlein,chr9:17134980-17503921:+,ADAMTSL1->ADAMTS_like_1,chr9:18473892-18910948:+	NCIH2052_PLEURA	0.17	0.35	0.0953	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	PVT1--SNTB1	7	1	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	105	11	0.07	0.42	0.0741	0.0106	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH2052_PLEURA	0.07	0.42	0.0847	TRUE	0	0	0	25	0	FALSE	ACH-000153
NCIH2052_PLEURA	HAUS8--ACP5	6	1	HAUS8	4421	chr19:17179841:-	ACP5	18184	chr19:11688494:-	ONLY_REF_SPLICE	YES	48	2	0.13	0.78	0.0635	0.0106	HAUS8->HAUS_augmin_like_complex_subunit_8,chr19:17160539-17186435:-,ACP5->acid_phosphatase_5,_tartrate_resistant,chr19:11685475-11689823:-	NCIH2052_PLEURA	0.13	0.78	0.0741	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	NRIP1--AF127936.7	4	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	61	1	0.13	0.9	0.0424	0.053	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2052_PLEURA	0.13	0.9	0.0954	FALSE	125	705	46	456	0	FALSE	ACH-000153
NCIH2052_PLEURA	MT-TA--MT-TC	4	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0.0424	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2052_PLEURA	1	1	0.0848	FALSE	462	80	0	856	0	FALSE	ACH-000153
NCIH2052_PLEURA	RAI1--ERI3	5	0	RAI1	1321	chr17:17585107:+	ERI3	29341	chr1:44750579:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.053	0	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,ERI3->ERI1_exoribonuclease_family_member_3,chr1:44686742-44820932:-	NCIH2052_PLEURA	1	1	0.053	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	NRIP1--AF127936.7	2	11	NRIP1	4648	chr21:16374501:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	135	1	0.09	0.93	0.0212	0.1165	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2052_PLEURA	0.09	0.93	0.1377	FALSE	0	1	0	3	0	FALSE	ACH-000153
NCIH2052_PLEURA	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0.0635	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2052_PLEURA	1	1	0.0953	FALSE	467	2173	244	435	0	FALSE	ACH-000153
NCIH2052_PLEURA	AC004076.9--ZIM2	4	1	AC004076.9	1903	chr19:57988002:-	ZIM2	17994	chr19:57301319:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0424	0.0106	PROTCLUST,AC004076.9->chr19:57949338-57988904:-,ZIM2->chr19:57285920-57352097:-,zinc_finger_imprinted_2	NCIH2052_PLEURA	0.83	1	0.053	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	9	21	0.36	0.19	0.0424	0.0106	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2052_PLEURA	0.19	0.36	0.053	FALSE	25	145	6	90	0	FALSE	ACH-000153
NCIH2052_PLEURA	RP11-96H19.1--RP11-446N19.1	2	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0212	0.0953	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2052_PLEURA	0.92	1	0.1165	FALSE	192	492	57	212	0	FALSE	ACH-000153
NCIH2052_PLEURA	CNTLN--ADAMTSL1	4	0	CNTLN	1444	chr9:17135423:+	ADAMTSL1	77775	chr9:18892387:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0424	0	{Klijn_CCL:Other=1},CNTLN->centlein,chr9:17134980-17503921:+,ADAMTSL1->ADAMTS_like_1,chr9:18473892-18910948:+	NCIH2052_PLEURA	1	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2052_PLEURA	1	1	0.0424	FALSE	462	80	0	856	0	FALSE	ACH-000153
NCIH2052_PLEURA	RP11-120D5.1--MID1	3	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	8	94	0.47	0.07	0.0318	0.0424	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2052_PLEURA	0.07	0.47	0.0742	FALSE	16	356	14	466	0	FALSE	ACH-000153
NCIH2052_PLEURA	RP11-123O10.4--GRIP1	4	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0424	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2052_PLEURA	1	1	0.0424	FALSE	93	270	15	244	0	FALSE	ACH-000153
NCIH2052_PLEURA	MT-TA--MT-TC	3	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0.0212	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2052_PLEURA	1	1	0.053	FALSE	462	80	0	856	0	FALSE	ACH-000153
NCIH2052_PLEURA	CTD-2337A12.1--CAST	3	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0318	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH2052_PLEURA	1	1	0.0318	TRUE	347	1186	183	220	0	FALSE	ACH-000153
NCIH2052_PLEURA	RAI1--ERI3	2	2	RAI1	3231	chr17:17587017:+	ERI3	28249	chr1:44774073:-	ONLY_REF_SPLICE	YES	6	151	0.4	0.03	0.0212	0.0212	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,ERI3->ERI1_exoribonuclease_family_member_3,chr1:44686742-44820932:-	NCIH2052_PLEURA	0.03	0.4	0.0424	TRUE	0	0	0	1	0	FALSE	ACH-000153
NCIH2052_PLEURA	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	100	21	0.03	0.12	0.0212	0.0106	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2052_PLEURA	0.03	0.12	0.0318	FALSE	8	57	1	47	0	FALSE	ACH-000153
NCIH2052_PLEURA	RP11-163F15.1--RP11-215N21.1	2	1	RP11-163F15.1	1139	chr10:110321435:-	RP11-215N21.1	6576	chr10:109871360:-	ONLY_REF_SPLICE	NO	2	0	0.6	1	0.0212	0.0106	RP11-163F15.1->chr10:110307733-110321573:-,RP11-215N21.1->chr10:109517591-109871360:-	NCIH2052_PLEURA	0.6	1	0.0318	TRUE	0	5	0	7	5	TRUE	ACH-000153
NCIH2052_PLEURA	YWHAE--CRK	2	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1663	113	0	0.03	0.0212	0.0106	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NCIH2052_PLEURA	0	0.03	0.0318	FALSE	6	50	7	115	0	FALSE	ACH-000153
NCIH2052_PLEURA	ERRFI1--CAPZB	2	0	ERRFI1	1151	chr1:8086218:-	CAPZB	14861	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	NCIH2052_PLEURA	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	GAS6--RASA3	2	0	GAS6	1499	chr13:114566548:-	RASA3	24912	chr13:114806570:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-	NCIH2052_PLEURA	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	RBM39--ZMYND8	2	0	RBM39	2788	chr20:34328447:-	ZMYND8	54195	chr20:45856024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-,ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8	NCIH2052_PLEURA	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	TAOK1--WSB1	1	4	TAOK1	3886	chr17:27794234:+	WSB1	46133	chr17:25633808:+	ONLY_REF_SPLICE	YES	35	180	0.12	0.03	0.0106	0.0424	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,WSB1->WD_repeat_and_SOCS_box_containing_1,chr17:25621102-25640657:+	NCIH2052_PLEURA	0.03	0.12	0.053	TRUE	0	0	0	1	0	FALSE	ACH-000153
NCIH2052_PLEURA	TIMMDC1--GNAS	2	0	TIMMDC1	6578	chr3:119236162:+	GNAS	33494	chr20:57478586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	TIMMDC1->chr3:119217379-119243937:+,translocase_of_inner_mitochondrial_membrane_domain_containing_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH2052_PLEURA	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	PMP22--RIBC1	1	3	PMP22	4923	chr17:15162411:-	RIBC1	14634	chrX:53453225:+	ONLY_REF_SPLICE	YES	102	0	0.04	1	0.0106	0.0318	PMP22->chr17:15133095-15168643:-,peripheral_myelin_protein_22,RIBC1->RIB43A_domain_with_coiled-coils_1,chrX:53449639-53458059:+	NCIH2052_PLEURA	0.04	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	RP11-120D5.1--MID1	1	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	8	94	0.33	0.04	0.0106	0.0318	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2052_PLEURA	0.04	0.33	0.0424	FALSE	0	48	1	163	0	FALSE	ACH-000153
NCIH2052_PLEURA	LINC00152--AC093616.4	1	2	LINC00152	1278	chr2:87755164:+	AC093616.4	21811	chr2:88012878:+	ONLY_REF_SPLICE	YES	645	43	0	0.07	0.0106	0.0212	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	NCIH2052_PLEURA	0	0.07	0.0318	FALSE	0	0	0	3	0	FALSE	ACH-000153
NCIH2052_PLEURA	TBL1XR1--RP11-71G7.1	1	2	TBL1XR1	20757	chr3:176750759:-	RP11-71G7.1	36567	chr3:176344134:-	ONLY_REF_SPLICE	YES	24	0	0.11	1	0.0106	0.0212	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-71G7.1->chr3:176321931-176353320:-	NCIH2052_PLEURA	0.11	1	0.0318	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	AC004076.9--ZIM2	1	1	AC004076.9	1260	chr19:57988645:-	ZIM2	17994	chr19:57301319:-	ONLY_REF_SPLICE	NO	3	0	0.4	1	0.0106	0.0106	PROTCLUST,AC004076.9->chr19:57949338-57988904:-,ZIM2->chr19:57285920-57352097:-,zinc_finger_imprinted_2	NCIH2052_PLEURA	0.4	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000153
NCIH2052_PLEURA	CNTLN--ADAMTSL1	1	1	CNTLN	1444	chr9:17135423:+	ADAMTSL1	47906	chr9:18635941:+	ONLY_REF_SPLICE	NO	17	39	0.11	0.05	0.0106	0.0106	{Klijn_CCL:Other=1},CNTLN->centlein,chr9:17134980-17503921:+,ADAMTSL1->ADAMTS_like_1,chr9:18473892-18910948:+	NCIH2052_PLEURA	0.05	0.11	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000153
NCIH2052_PLEURA	CRIM1--FEZ2	1	1	CRIM1	18863	chr2:36749456:+	FEZ2	38223	chr2:36806008:-	ONLY_REF_SPLICE	YES	525	215	0	0.01	0.0106	0.0106	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	NCIH2052_PLEURA	0	0.01	0.0212	FALSE	0	0	0	2	0	FALSE	ACH-000153
NCIH2052_PLEURA	PIKFYVE--CREB1	1	1	PIKFYVE	32913	chr2:209204855:+	CREB1	53442	chr2:208420352:+	ONLY_REF_SPLICE	YES	33	68	0.06	0.03	0.0106	0.0106	PIKFYVE->chr2:209130991-209223475:+,phosphoinositide_kinase,_FYVE-type_zinc_finger_containing,CREB1->Oncogene{Bushman},cAMP_responsive_element_binding_protein_1,chr2:208394461-208468155:+	NCIH2052_PLEURA	0.03	0.06	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000153
NCIH2052_PLEURA	PROSC--CHMP1A	1	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	94	242	0.02	0.01	0.0106	0.0106	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH2052_PLEURA	0.01	0.02	0.0212	FALSE	13	55	3	29	0	FALSE	ACH-000153
NCIH2052_PLEURA	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	27	1	0.07	0.0106	0.0106	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2052_PLEURA	0.07	1	0.0212	TRUE	64	13	3	59	0	FALSE	ACH-000153
NCIH2052_PLEURA	SF1--FUS	1	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	206	563	0.01	0	0.0106	0.0106	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH2052_PLEURA	0	0.01	0.0212	FALSE	5	20	0	32	0	FALSE	ACH-000153
NCIH2052_PLEURA	TRIT1--PPIE	1	1	TRIT1	1194	chr1:40348990:-	PPIE	34056	chr1:40229361:+	ONLY_REF_SPLICE	YES	49	4	0.04	0.33	0.0106	0.0106	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH2052_PLEURA	0.04	0.33	0.0212	TRUE	0	0	0	4	0	TRUE	ACH-000153
NCIH2052_PLEURA	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	NO	33	0	0.06	1	0.0106	0.0106	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH2052_PLEURA	0.06	1	0.0212	FALSE	272	151	14	158	0	FALSE	ACH-000153
DMS79_LUNG	NUP98--CTA-392E5.1	135	107	NUP98	7311	chr11:3792978:-	CTA-392E5.1	47339	chr8:86898164:+	ONLY_REF_SPLICE	YES	121	0	0.67	1	1.756	1.3918	NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,CTA-392E5.1->chr8:86851934-86963312:+	DMS79_LUNG	0.67	1	3.1478	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	NFIX--GCDH	103	49	NFIX	4898	chr19:13136366:+	GCDH	31188	chr19:13024809:+	ONLY_REF_SPLICE	YES	205	6	0.43	0.96	1.3398	0.6374	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[81401],NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,GCDH->chr19:13001840-13025021:+,glutaryl-CoA_dehydrogenase	DMS79_LUNG	0.43	0.96	1.9772	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	TIMM23B--LINC00843	81	41	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0536	0.5333	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DMS79_LUNG	1	1	1.5869	TRUE	508	994	45	981	0	FALSE	ACH-000703
DMS79_LUNG	TESC--FBXO21	61	36	TESC	5360	chr12:117494611:-	FBXO21	18469	chr12:117615446:-	ONLY_REF_SPLICE	YES	335	139	0.22	0.41	0.7935	0.4683	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[43862],TESC->chr12:117476728-117537284:-,tescalcin,FBXO21->F-box_protein_21,chr12:117581146-117628336:-	DMS79_LUNG	0.22	0.41	1.2618	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	ZNF654--HMGB2	48	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6244	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	DMS79_LUNG	1	1	0.6244	TRUE	0	0	0	518	0	FALSE	ACH-000703
DMS79_LUNG	OR51S1--TP53I11	46	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5983	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	DMS79_LUNG	1	1	0.5983	TRUE	402	216	10	229	0	FALSE	ACH-000703
DMS79_LUNG	TIMM23--RP11-464F9.1	45	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	145	4	0.25	0.92	0.5853	0.052	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DMS79_LUNG	0.25	0.92	0.6373	TRUE	519	3926	326	965	0	FALSE	ACH-000703
DMS79_LUNG	NUP98--CTA-392E5.1	30	52	NUP98	7311	chr11:3792978:-	CTA-392E5.1	49530	chr8:86920542:+	ONLY_REF_SPLICE	YES	121	1	0.4	0.99	0.3902	0.6764	NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,CTA-392E5.1->chr8:86851934-86963312:+	DMS79_LUNG	0.4	0.99	1.0666	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	RP11-408A13.2--NFIB	35	12	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	341	1	0.12	0.4553	0.1561	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	DMS79_LUNG	0.12	1	0.6114	TRUE	0	14	0	20	14	FALSE	ACH-000703
DMS79_LUNG	MT-ND6--MT-TE	36	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.4683	0.013	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS79_LUNG	0.97	1	0.4813	FALSE	499	1288	110	792	0	FALSE	ACH-000703
DMS79_LUNG	PTK2--TSNARE1	26	30	PTK2	57117	chr8:141675016:-	TSNARE1	77554	chr8:143382008:-	ONLY_REF_SPLICE	YES	393	55	0.12	0.5	0.3382	0.3902	{Klijn_CCL:Lung=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TSNARE1->chr8:143293441-143484601:-,t-SNARE_domain_containing_1	DMS79_LUNG	0.12	0.5	0.7284	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	PTK2--TSNARE1	22	30	PTK2	57117	chr8:141675016:-	TSNARE1	77557	chr8:143382005:-	ONLY_REF_SPLICE	YES	393	53	0.12	0.5	0.2862	0.3902	{Klijn_CCL:Lung=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TSNARE1->chr8:143293441-143484601:-,t-SNARE_domain_containing_1	DMS79_LUNG	0.12	0.5	0.6764	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	MT-TA--MT-TC	27	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3512	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DMS79_LUNG	1	1	0.3512	FALSE	462	80	0	856	0	FALSE	ACH-000703
DMS79_LUNG	RP11-123O10.4--GRIP1	22	13	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2862	0.1691	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DMS79_LUNG	1	1	0.4553	FALSE	416	2512	207	587	0	FALSE	ACH-000703
DMS79_LUNG	MT-ND6--MT-TE	24	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.3122	0.039	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS79_LUNG	0.96	1	0.3512	FALSE	499	1288	110	792	0	FALSE	ACH-000703
DMS79_LUNG	NUP98--CTA-392E5.1	4	81	NUP98	7284	chr11:3793005:-	CTA-392E5.1	47339	chr8:86898164:+	INCL_NON_REF_SPLICE	YES	101	0	0.46	1	0.052	1.0536	NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,CTA-392E5.1->chr8:86851934-86963312:+	DMS79_LUNG	0.46	1	1.1056	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	C1orf56--SETDB1	19	17	C1orf56	3715	chr1:151022930:+	SETDB1	16197	chr1:150916396:+	INCL_NON_REF_SPLICE	YES	2	102	0.95	0.26	0.2471	0.2211	LOCAL_REARRANGEMENT:+:[83003],C1orf56->chr1:151020216-151024462:+,chromosome_1_open_reading_frame_56,SETDB1->SET_domain_bifurcated_1,chr1:150898739-150937213:+	DMS79_LUNG	0.26	0.95	0.4682	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	RP1-34H18.1--NAV3	20	9	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2601	0.1171	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	DMS79_LUNG	1	1	0.3772	TRUE	254	575	65	124	0	FALSE	ACH-000703
DMS79_LUNG	MT-ND4--MT-ND1	20	1	MT-ND4	2043	chrM:11802:+	MT-ND1	5745	chrM:3673:+	INCL_NON_REF_SPLICE	NO	11713	6998	0	0	0.2601	0.013	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	DMS79_LUNG	0	0	0.2731	FALSE	51	52	3	16	0	FALSE	ACH-000703
DMS79_LUNG	NUP98--CTA-392E5.1	11	37	NUP98	7191	chr11:3793098:-	CTA-392E5.1	47339	chr8:86898164:+	INCL_NON_REF_SPLICE	YES	98	0	0.33	1	0.1431	0.4813	NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,CTA-392E5.1->chr8:86851934-86963312:+	DMS79_LUNG	0.33	1	0.6244	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	RP4-565E6.1--HYDIN	17	5	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.2211	0.065	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	DMS79_LUNG	0.96	1	0.2861	TRUE	456	1387	91	133	0	FALSE	ACH-000703
DMS79_LUNG	MT-ND4--MT-ND4L	17	2	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	33	0	0.37	1	0.2211	0.026	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS79_LUNG	0.37	1	0.2471	FALSE	344	827	44	306	0	FALSE	ACH-000703
DMS79_LUNG	CROCC--MST1L	14	11	CROCC	16192	chr1:17273486:+	MST1L	40477	chr1:17087597:-	ONLY_REF_SPLICE	YES	53	0	0.32	1	0.1821	0.1431	NEIGHBORS_OVERLAP:+:-:[15327],CROCC->chr1:17066768-17299474:+,ciliary_rootlet_coiled-coil,_rootletin,MST1L->chr1:17081405-17096732:-,macrophage_stimulating_1-like	DMS79_LUNG	0.32	1	0.3252	FALSE	0	0	0	1	0	FALSE	ACH-000703
DMS79_LUNG	RP11-120D5.1--MID1	15	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	7	0.9	0.72	0.1951	0.039	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	DMS79_LUNG	0.72	0.9	0.2341	FALSE	16	356	14	466	0	FALSE	ACH-000703
DMS79_LUNG	MAF--RP11-679B19.2	13	10	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1691	0.1301	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	DMS79_LUNG	1	1	0.2992	TRUE	48	25	3	38	0	FALSE	ACH-000703
DMS79_LUNG	MT-ND6--MT-TE	15	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1951	0.013	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS79_LUNG	0.94	1	0.2081	FALSE	499	1288	110	792	0	FALSE	ACH-000703
DMS79_LUNG	WNK2--C9orf89	13	8	WNK2	19520	chr9:96031028:+	C9orf89	40944	chr9:95869956:+	ONLY_REF_SPLICE	YES	57	19	0.27	0.53	0.1691	0.1041	LOCAL_REARRANGEMENT:+:[71633],WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+,C9orf89->chr9:95858500-95875565:+	DMS79_LUNG	0.27	0.53	0.2732	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	NUP98--CTA-392E5.1	4	41	NUP98	7284	chr11:3793005:-	CTA-392E5.1	49530	chr8:86920542:+	INCL_NON_REF_SPLICE	YES	101	1	0.31	0.98	0.052	0.5333	NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,CTA-392E5.1->chr8:86851934-86963312:+	DMS79_LUNG	0.31	0.98	0.5853	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	TESC--FBXO21	10	13	TESC	4279	chr12:117513076:-	FBXO21	18469	chr12:117615446:-	ONLY_REF_SPLICE	YES	137	139	0.14	0.14	0.1301	0.1691	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[43862],TESC->chr12:117476728-117537284:-,tescalcin,FBXO21->F-box_protein_21,chr12:117581146-117628336:-	DMS79_LUNG	0.14	0.14	0.2992	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	SHANK2--RP11-9B6.1	13	0	SHANK2	23844	chr11:70742606:-	RP11-9B6.1	63709	chr4:93222036:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1691	0	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,RP11-9B6.1->chr4:93218402-93225329:-	DMS79_LUNG	1	1	0.1691	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	ARID1B--TPRG1	11	6	ARID1B	2543	chr6:157100605:+	TPRG1	66096	chr3:189028175:+	ONLY_REF_SPLICE	YES	18	0	0.49	1	0.1431	0.078	ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+,TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1	DMS79_LUNG	0.49	1	0.2211	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	MT-ND4--MT-ND4L	4	31	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.052	0.4032	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS79_LUNG	0.88	1	0.4552	FALSE	344	821	44	306	0	FALSE	ACH-000703
DMS79_LUNG	NUP98--CTA-392E5.1	5	27	NUP98	6130	chr11:3794862:-	CTA-392E5.1	47339	chr8:86898164:+	ONLY_REF_SPLICE	YES	164	0	0.16	1	0.065	0.3512	NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,CTA-392E5.1->chr8:86851934-86963312:+	DMS79_LUNG	0.16	1	0.4162	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	MT-ND4--MT-ND4L	3	33	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	4514	0	0.01	1	0.039	0.4292	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS79_LUNG	0.01	1	0.4682	FALSE	344	827	44	306	0	FALSE	ACH-000703
DMS79_LUNG	MT-TA--MT-TC	11	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1431	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DMS79_LUNG	1	1	0.1431	FALSE	462	80	0	856	0	FALSE	ACH-000703
DMS79_LUNG	CREBBP--ADCY9	7	15	CREBBP	4785	chr16:3860604:-	ADCY9	49220	chr16:4057559:-	ONLY_REF_SPLICE	YES	126	28	0.15	0.44	0.0911	0.1951	LOCAL_REARRANGEMENT:-:[72661],CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-	DMS79_LUNG	0.15	0.44	0.2862	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	MT-ND4--MT-ND4L	7	11	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	428	0	0.04	1	0.0911	0.1431	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS79_LUNG	0.04	1	0.2342	FALSE	344	827	44	306	0	FALSE	ACH-000703
DMS79_LUNG	ARMC8--CPNE4	9	2	ARMC8	1333	chr3:137906441:+	CPNE4	42289	chr3:131624288:-	ONLY_REF_SPLICE	YES	29	74	0.28	0.13	0.1171	0.026	ARMC8->armadillo_repeat_containing_8,chr3:137906109-138017231:+,CPNE4->chr3:131252399-132004254:-,copine_4	DMS79_LUNG	0.13	0.28	0.1431	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1171	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DMS79_LUNG	1	1	0.1171	TRUE	0	0	0	434	0	FALSE	ACH-000703
DMS79_LUNG	RP11-112J1.2--DAAM1	8	3	RP11-112J1.2	6942	chr14:59415059:+	DAAM1	13257	chr14:59730159:+	ONLY_REF_SPLICE	YES	0	33	1	0.25	0.1041	0.039	RP11-112J1.2->chr14:59294952-59484046:+,DAAM1->chr14:59655364-59838123:+,dishevelled_associated_activator_of_morphogenesis_1	DMS79_LUNG	0.25	1	0.1431	TRUE	0	0	0	2	0	TRUE	ACH-000703
DMS79_LUNG	C1orf56--SETDB1	5	13	C1orf56	2113	chr1:151021328:+	SETDB1	16197	chr1:150916396:+	ONLY_REF_SPLICE	YES	5	102	0.78	0.15	0.065	0.1691	LOCAL_REARRANGEMENT:+:[83003],C1orf56->chr1:151020216-151024462:+,chromosome_1_open_reading_frame_56,SETDB1->SET_domain_bifurcated_1,chr1:150898739-150937213:+	DMS79_LUNG	0.15	0.78	0.2341	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	MT-ND6--MT-TE	7	5	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0911	0.065	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS79_LUNG	0.92	1	0.1561	FALSE	499	1288	110	792	0	FALSE	ACH-000703
DMS79_LUNG	NIPA2--POLA1	8	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1041	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	DMS79_LUNG	1	1	0.1041	TRUE	46	1352	75	139	0	FALSE	ACH-000703
DMS79_LUNG	RP11-120I21.2--RALYL	6	7	RP11-120I21.2	3279	chr8:84996478:+	RALYL	12120	chr8:85441534:+	ONLY_REF_SPLICE	YES	56	129	0.19	0.09	0.078	0.0911	NEIGHBORS[42504],RP11-120I21.2->chr8:84824948-85052518:+,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	DMS79_LUNG	0.09	0.19	0.1691	FALSE	0	8	1	4	0	FALSE	ACH-000703
DMS79_LUNG	RP11-680G10.1--GSE1	7	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	35	1	0.22	0.0911	0.039	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DMS79_LUNG	0.22	1	0.1301	TRUE	465	1949	224	605	0	FALSE	ACH-000703
DMS79_LUNG	RP11-120D5.1--MID1	6	3	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	2	7	0.82	0.56	0.078	0.039	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	DMS79_LUNG	0.56	0.82	0.117	FALSE	0	9	0	55	0	FALSE	ACH-000703
DMS79_LUNG	OSBPL2--RP4-530I15.6	4	10	OSBPL2	13696	chr20:60861767:+	RP4-530I15.6	24641	chr20:49270483:+	ONLY_REF_SPLICE	YES	106	0	0.12	1	0.052	0.1301	OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2,RP4-530I15.6->chr20:49262008-49278812:+	DMS79_LUNG	0.12	1	0.1821	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	C1orf56--SETDB1	2	17	C1orf56	3745	chr1:151022960:+	SETDB1	16197	chr1:150916396:+	ONLY_REF_SPLICE	YES	3	102	0.86	0.16	0.026	0.2211	LOCAL_REARRANGEMENT:+:[83003],C1orf56->chr1:151020216-151024462:+,chromosome_1_open_reading_frame_56,SETDB1->SET_domain_bifurcated_1,chr1:150898739-150937213:+	DMS79_LUNG	0.16	0.86	0.2471	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	RP11-680G10.1--GSE1	4	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	12	1	0.5	0.052	0.1041	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DMS79_LUNG	0.5	1	0.1561	TRUE	458	1351	185	561	0	FALSE	ACH-000703
DMS79_LUNG	TUBA1B--RP11-355I22.8	6	0	TUBA1B	3926	chr12:49522255:-	RP11-355I22.8	7987	chr14:62618606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.078	0	NUCLCLUST,TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,RP11-355I22.8->chr14:62617374-62618976:-	DMS79_LUNG	1	1	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	TUBA1B--RP11-355I22.8	6	0	TUBA1B	3837	chr12:49522344:-	RP11-355I22.8	7987	chr14:62618606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.078	0	NUCLCLUST,TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,RP11-355I22.8->chr14:62617374-62618976:-	DMS79_LUNG	1	1	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DMS79_LUNG	1	1	0.065	TRUE	0	0	0	434	0	FALSE	ACH-000703
DMS79_LUNG	RP11-123O10.4--GRIP1	3	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.039	0.1041	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DMS79_LUNG	0.92	1	0.1431	FALSE	93	270	15	244	0	FALSE	ACH-000703
DMS79_LUNG	AP000525.9--LA16c-60G3.6	4	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0.013	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	DMS79_LUNG	1	1	0.065	TRUE	0	42	0	133	42	FALSE	ACH-000703
DMS79_LUNG	HAS3--TANGO6	3	5	HAS3	4768	chr16:69143934:+	TANGO6	38919	chr16:69117388:+	ONLY_REF_SPLICE	YES	60	14	0.12	0.36	0.039	0.065	LOCAL_REARRANGEMENT:+:[20384],HAS3->chr16:69139467-69152622:+,hyaluronan_synthase_3,TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog	DMS79_LUNG	0.12	0.36	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	DSCR3--TTC3	4	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.052	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	DMS79_LUNG	1	1	0.052	TRUE	0	9	0	44	1	FALSE	ACH-000703
DMS79_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS79_LUNG	1	1	0.052	FALSE	344	821	44	306	0	FALSE	ACH-000703
DMS79_LUNG	RP11-120I21.2--RALYL	2	8	RP11-120I21.2	3279	chr8:84996478:+	RALYL	11088	chr8:85258354:+	ONLY_REF_SPLICE	YES	56	134	0.15	0.07	0.026	0.1041	NEIGHBORS[42504],RP11-120I21.2->chr8:84824948-85052518:+,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	DMS79_LUNG	0.07	0.15	0.1301	FALSE	0	6	0	2	0	FALSE	ACH-000703
DMS79_LUNG	MT-ND4--MT-ND4L	3	2	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	16	0	0.24	1	0.039	0.026	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DMS79_LUNG	0.24	1	0.065	FALSE	344	826	44	306	0	FALSE	ACH-000703
DMS79_LUNG	OSBPL2--RP4-530I15.6	2	6	OSBPL2	13696	chr20:60861767:+	RP4-530I15.6	25691	chr20:49276403:+	ONLY_REF_SPLICE	YES	106	3	0.07	0.73	0.026	0.078	OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2,RP4-530I15.6->chr20:49262008-49278812:+	DMS79_LUNG	0.07	0.73	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	CREBBP--ADCY9	2	4	CREBBP	4785	chr16:3860604:-	ADCY9	50411	chr16:4043511:-	ONLY_REF_SPLICE	YES	126	43	0.05	0.12	0.026	0.052	LOCAL_REARRANGEMENT:-:[72661],CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-,ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-	DMS79_LUNG	0.05	0.12	0.078	TRUE	0	0	0	1	0	FALSE	ACH-000703
DMS79_LUNG	CTD-2281E23.2--DLGAP2	3	0	CTD-2281E23.2	3418	chr8:1208883:+	DLGAP2	8510	chr8:1449532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	GTEx_FI:{Testis=[count:34=pct:32.4],Brain=[count:24=pct:3.6],Pituitary=[count:4=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Thyroid=[count:2=pct:1.1]},CTD-2281E23.2->chr8:1054882-1212580:+,DLGAP2->chr8:1449532-1656642:+,discs_large_homolog_associated_protein_2	DMS79_LUNG	1	1	0.039	TRUE	49	61	1	13	0	FALSE	ACH-000703
DMS79_LUNG	FOXO1--LINC00598	3	0	FOXO1	2015	chr13:41239720:-	LINC00598	16798	chr13:41034543:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	NEIGHBORS[74661],FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,LINC00598->chr13:41025131-41055143:-,long_intergenic_non-protein_coding_RNA_598	DMS79_LUNG	1	1	0.039	FALSE	8	15	1	11	0	FALSE	ACH-000703
DMS79_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DMS79_LUNG	1	1	0.039	FALSE	499	1288	110	792	0	FALSE	ACH-000703
DMS79_LUNG	MT-TA--MT-TC	3	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DMS79_LUNG	1	1	0.039	FALSE	462	80	0	856	0	FALSE	ACH-000703
DMS79_LUNG	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DMS79_LUNG	1	1	0.039	TRUE	0	0	0	434	0	FALSE	ACH-000703
DMS79_LUNG	RP11-762I7.5--RP11-620J15.2	3	0	RP11-762I7.5	6477	chr12:56211450:-	RP11-620J15.2	25975	chr12:58265871:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	RP11-762I7.5->chr12:56151059-56221330:-,RP11-620J15.2->chr12:58263618-58290265:-	DMS79_LUNG	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	SHANK2--RP11-9B6.1	3	0	SHANK2	23844	chr11:70742606:-	RP11-9B6.1	63706	chr4:93222039:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,RP11-9B6.1->chr4:93218402-93225329:-	DMS79_LUNG	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	CCDC122--ENOX1	2	1	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	30	22	0.09	0.12	0.026	0.013	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	DMS79_LUNG	0.09	0.12	0.039	FALSE	39	52	2	34	0	FALSE	ACH-000703
DMS79_LUNG	DMKN--EVL	2	1	DMKN	10559	chr19:35993732:-	EVL	45376	chr14:100607517:+	ONLY_REF_SPLICE	YES	285	821	0.01	0	0.026	0.013	DMKN->chr19:35988122-36004560:-,dermokine,EVL->Enah/Vasp-like,Oncogene{Bushman},chr14:100437786-100610573:+	DMS79_LUNG	0	0.01	0.039	FALSE	0	0	0	1	0	FALSE	ACH-000703
DMS79_LUNG	FAM155B--EDA	2	1	FAM155B	1903	chrX:68725986:+	EDA	20199	chrX:69176877:+	ONLY_REF_SPLICE	YES	35	9	0.08	0.25	0.026	0.013	NEIGHBORS[83560],FAM155B->chrX:68725084-68752351:+,family_with_sequence_similarity_155_member_B,EDA->chrX:68835911-69259319:+,ectodysplasin_A	DMS79_LUNG	0.08	0.25	0.039	FALSE	6	5	0	3	0	FALSE	ACH-000703
DMS79_LUNG	RP13-188A5.1--KLF8	2	1	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	1	30	0.75	0.09	0.026	0.013	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	DMS79_LUNG	0.09	0.75	0.039	TRUE	10	78	6	20	0	FALSE	ACH-000703
DMS79_LUNG	VTI1A--RP11-57H14.3	2	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	58	0	0.05	1	0.026	0.013	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	DMS79_LUNG	0.05	1	0.039	FALSE	272	151	14	158	0	FALSE	ACH-000703
DMS79_LUNG	AP000487.5--UBR1	2	0	AP000487.5	1391	chr11:70244204:-	UBR1	33757	chr15:43317627:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	AP000487.5->chr11:70218352-70244594:-,UBR1->chr15:43235095-43398311:-,ubiquitin_protein_ligase_E3_component_n-recognin_1	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	B3GAT1--SLC41A2	2	0	B3GAT1	1112	chr11:134281701:-	SLC41A2	29039	chr12:105280217:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	B3GAT1->beta-1,3-glucuronyltransferase_1,chr11:134248398-134281812:-,SLC41A2->chr12:105196331-105352522:-,solute_carrier_family_41_member_2	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	CBX5--COPZ1	2	0	CBX5	5659	chr12:54645825:-	COPZ1	27861	chr12:54739244:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_INVERSION:-:+:[21100],CBX5->chr12:54624724-54673886:-,chromobox_5,COPZ1->chr12:54694986-54745633:+,coatomer_protein_complex_subunit_zeta_1	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	CTB-55O6.12--GPCPD1	2	0	CTB-55O6.12	2373	chr19:14266291:+	GPCPD1	24672	chr20:5545724:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CTB-55O6.12->chr19:14247991-14282079:+,GPCPD1->chr20:5525085-5591672:-,glycerophosphocholine_phosphodiesterase_1	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	CTD-2006C1.2--RFX3	2	0	CTD-2006C1.2	3469	chr19:12112637:+	RFX3	22680	chr9:3395596:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CTD-2006C1.2->chr19:12098432-12157090:+,RFX3->chr9:3218297-3526004:-,regulatory_factor_X3	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	CTD-2561J22.5--RTF1	2	0	CTD-2561J22.5	1165	chr19:21646546:-	RTF1	16740	chr15:41745099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CTD-2561J22.5->chr19:21627043-21646710:-,RTF1->RTF1_homolog,_Paf1/RNA_polymerase_II_complex_component,chr15:41700606-41775761:+	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	EFCAB11--RP11-944C7.1	2	0	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	DMS79_LUNG	1	1	0.026	TRUE	31	91	1	18	0	FALSE	ACH-000703
DMS79_LUNG	FAM155A--CORO2B	2	0	FAM155A	2054	chr13:108518030:-	CORO2B	14418	chr15:68987479:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	FAM155A->chr13:107820883-108519083:-,family_with_sequence_similarity_155_member_A,CORO2B->Oncogene{Bushman},chr15:68871308-69020145:+,coronin_2B	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	MB21D2--FGF12	2	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	DMS79_LUNG	1	1	0.026	FALSE	0	17	0	46	0	FALSE	ACH-000703
DMS79_LUNG	RP11-112J1.2--DAAM1	2	0	RP11-112J1.2	5913	chr14:59377060:+	DAAM1	13257	chr14:59730159:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RP11-112J1.2->chr14:59294952-59484046:+,DAAM1->chr14:59655364-59838123:+,dishevelled_associated_activator_of_morphogenesis_1	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	23013	chrX:10491227:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	DMS79_LUNG	1	1	0.026	FALSE	0	3	0	6	0	FALSE	ACH-000703
DMS79_LUNG	RP11-281A20.1--FGF14	2	0	RP11-281A20.1	3336	chr9:120632322:-	FGF14	10123	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RP11-281A20.1->chr9:120602600-120659534:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	SSBP1--MGAM	2	0	SSBP1	9443	chr7:141450184:+	MGAM	20665	chr7:141705329:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	SSBP1->chr7:141438121-141487722:+,single_stranded_DNA_binding_protein_1,MGAM->chr7:141607613-141806547:+,maltase-glucoamylase	DMS79_LUNG	1	1	0.026	TRUE	0	1	0	7	1	TRUE	ACH-000703
DMS79_LUNG	ZC3H8--NFYB	2	0	ZC3H8	2167	chr2:113011547:-	NFYB	21952	chr12:104529310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	ZC3H8->Oncogene{Bushman},chr2:112969102-113012713:-,zinc_finger_CCCH-type_containing_8,NFYB->chr12:104510855-104532067:-,nuclear_transcription_factor_Y_subunit_beta	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	ZNF250--MSTO1	2	0	ZNF250	5808	chr8:146112225:-	MSTO1	25374	chr1:155583850:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	ZNF250->chr8:146076632-146127553:-,zinc_finger_protein_250,MSTO1->chr1:155579979-155718153:+,misato_1,_mitochondrial_distribution_and_morphology_regulator	DMS79_LUNG	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	ARMC8--CPNE4	1	3	ARMC8	2264	chr3:137907372:+	CPNE4	43476	chr3:131442469:-	ONLY_REF_SPLICE	YES	92	95	0.04	0.04	0.013	0.039	ARMC8->armadillo_repeat_containing_8,chr3:137906109-138017231:+,CPNE4->chr3:131252399-132004254:-,copine_4	DMS79_LUNG	0.04	0.04	0.052	TRUE	0	0	0	1	0	FALSE	ACH-000703
DMS79_LUNG	NFIX--GCDH	1	3	NFIX	4714	chr19:13136182:+	GCDH	31188	chr19:13024809:+	ONLY_REF_SPLICE	YES	201	6	0.02	0.4	0.013	0.039	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[81401],NFIX->Oncogene{Bushman},chr19:13106422-13209610:+,nuclear_factor_I_X,GCDH->chr19:13001840-13025021:+,glutaryl-CoA_dehydrogenase	DMS79_LUNG	0.02	0.4	0.052	TRUE	0	0	0	1	0	FALSE	ACH-000703
DMS79_LUNG	RP11-112J1.2--DAAM1	1	3	RP11-112J1.2	8062	chr14:59475868:+	DAAM1	13257	chr14:59730159:+	ONLY_REF_SPLICE	YES	0	33	1	0.11	0.013	0.039	RP11-112J1.2->chr14:59294952-59484046:+,DAAM1->chr14:59655364-59838123:+,dishevelled_associated_activator_of_morphogenesis_1	DMS79_LUNG	0.11	1	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	TPST1--GS1-124K5.4	1	3	TPST1	5907	chr7:65751696:+	GS1-124K5.4	15884	chr7:65960242:+	ONLY_REF_SPLICE	NO	82	2	0.05	0.67	0.013	0.039	NEIGHBORS[73163],TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,GS1-124K5.4->chr7:65958693-65960461:+	DMS79_LUNG	0.05	0.67	0.052	FALSE	17	126	3	8	0	FALSE	ACH-000703
DMS79_LUNG	ATF2--CHN1	1	2	ATF2	17534	chr2:175945388:-	CHN1	26246	chr2:175816930:-	ONLY_REF_SPLICE	NO	227	135	0.01	0.02	0.013	0.026	NEIGHBORS[66881],ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-,CHN1->Oncogene{Bushman},chimerin_1,chr2:175664091-175870097:-	DMS79_LUNG	0.01	0.02	0.039	FALSE	0	0	0	7	0	FALSE	ACH-000703
DMS79_LUNG	ARID1B--TPRG1	1	1	ARID1B	2543	chr6:157100605:+	TPRG1	69573	chr3:189038415:+	ONLY_REF_SPLICE	NO	18	22	0.1	0.08	0.013	0.013	ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+,TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1	DMS79_LUNG	0.08	0.1	0.026	TRUE	0	0	0	1	0	FALSE	ACH-000703
DMS79_LUNG	CACNA2D1--PCLO	1	1	CACNA2D1	4816	chr7:81964451:-	PCLO	90408	chr7:82430907:-	ONLY_REF_SPLICE	YES	266	5	0.01	0.29	0.013	0.013	CACNA2D1->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_1,chr7:81575760-82073114:-,PCLO->chr7:82383329-82792246:-,piccolo_presynaptic_cytomatrix_protein	DMS79_LUNG	0.01	0.29	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000703
DMS79_LUNG	GDAP1--RP11-758M4.1	1	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	329	0	0.01	1	0.013	0.013	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	DMS79_LUNG	0.01	1	0.026	FALSE	7	28	0	43	0	FALSE	ACH-000703
DMS79_LUNG	PAFAH1B2--FOXR1	1	1	PAFAH1B2	1152	chr11:117015134:+	FOXR1	18967	chr11:118849492:+	ONLY_REF_SPLICE	YES	61	0	0.03	1	0.013	0.013	Mitelman{Neurbl=1},PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,FOXR1->chr11:118842417-118852001:+,forkhead_box_R1	DMS79_LUNG	0.03	1	0.026	TRUE	0	0	0	3	0	FALSE	ACH-000703
DMS79_LUNG	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	198	1	0.01	0.013	0.013	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DMS79_LUNG	0.01	1	0.026	FALSE	64	13	3	59	0	FALSE	ACH-000703
DMS79_LUNG	TIMM23--RP11-464F9.1	1	1	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	223	4	0.01	0.33	0.013	0.013	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DMS79_LUNG	0.01	0.33	0.026	FALSE	5	8	0	33	0	FALSE	ACH-000703
DMS79_LUNG	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	4	1	0.33	0.013	0.013	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DMS79_LUNG	0.33	1	0.026	TRUE	62	24	1	171	0	FALSE	ACH-000703
DMS79_LUNG	TMEM132E--CCL8	1	1	TMEM132E	1395	chr17:32908162:+	CCL8	16875	chr17:32647288:+	ONLY_REF_SPLICE	YES	8	4	0.2	0.33	0.013	0.013	TMEM132E->chr17:32907768-32966337:+,transmembrane_protein_132E,CCL8->C-C_motif_chemokine_ligand_8,chr17:32646055-32648421:+	DMS79_LUNG	0.2	0.33	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000703
DMS79_LUNG	TRAPPC9--KCNK9	1	1	TRAPPC9	55504	chr8:140898123:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	YES	70	61	0.03	0.03	0.013	0.013	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	DMS79_LUNG	0.03	0.03	0.026	FALSE	7	13	2	16	0	FALSE	ACH-000703
DMS79_LUNG	VTI1A--RP11-57H14.3	1	1	VTI1A	11748	chr10:114298089:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	NO	39	0	0.05	1	0.013	0.013	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	DMS79_LUNG	0.05	1	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000703
SKNDZ_AUTONOMIC_GANGLIA	METAP1D--FARSB	223	6	METAP1D	1427	chr2:172864916:+	FARSB	34788	chr2:223464802:-	ONLY_REF_SPLICE	YES	0	107	1	0.68	2.223	0.0598	METAP1D->chr2:172864490-172947158:+,methionyl_aminopeptidase_type_1D_(mitochondrial),FARSB->chr2:223435255-223521056:-,phenylalanyl-tRNA_synthetase_beta_subunit	SKNDZ_AUTONOMIC_GANGLIA	0.68	1	2.2828	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	KANSL1--ARL17B	186	76	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	48	56	0.85	0.82	1.8541	0.7576	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SKNDZ_AUTONOMIC_GANGLIA	0.82	0.85	2.6117	TRUE	181	1564	124	196	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	ING5--AC010884.1	181	1	ING5	1068	chr2:242641517:+	AC010884.1	20258	chr2:105561535:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.8043	0.01	ING5->chr2:242641450-242668893:+,inhibitor_of_growth_family_member_5,AC010884.1->chr2:105552869-105654954:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	1.8143	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	141	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4055	0.2592	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKNDZ_AUTONOMIC_GANGLIA	1	1	1.6647	TRUE	508	994	45	981	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	OLA1--LRRFIP1	82	15	OLA1	7507	chr2:175006553:-	LRRFIP1	57104	chr2:238688065:+	ONLY_REF_SPLICE	YES	152	30	0.39	0.76	0.8174	0.1495	{Klijn_CCL:Brain=1},OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-,LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1	SKNDZ_AUTONOMIC_GANGLIA	0.39	0.76	0.9669	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	80	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	284	3	0.23	0.97	0.7975	0.0299	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKNDZ_AUTONOMIC_GANGLIA	0.23	0.97	0.8274	TRUE	519	3926	326	965	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	ZNF654--HMGB2	74	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7377	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.7377	TRUE	0	0	0	518	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	CTSC--MAML2	51	10	CTSC	12860	chr11:88042331:-	MAML2	26089	chr11:95826681:-	ONLY_REF_SPLICE	YES	147	2	0.29	0.97	0.5084	0.0997	CTSC->cathepsin_C,chr11:88026760-88070955:-,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	SKNDZ_AUTONOMIC_GANGLIA	0.29	0.97	0.6081	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	MT-TA--MT-TC	37	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3688	0.0299	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.3987	FALSE	462	80	0	856	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	RP11-123O10.4--GRIP1	36	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.98	0.3589	0.0498	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKNDZ_AUTONOMIC_GANGLIA	0.98	1	0.4087	FALSE	416	2512	207	587	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NBAS--AC008278.2	28	31	NBAS	25384	chr2:15557651:-	AC008278.2	62844	chr2:15704226:+	INCL_NON_REF_SPLICE	YES	23	0	0.72	1	0.2791	0.309	LOCAL_INVERSION:-:+:[2840],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC008278.2->chr2:15704294-15713992:+	SKNDZ_AUTONOMIC_GANGLIA	0.72	1	0.5881	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	THADA--DYTN	30	2	THADA	34712	chr2:43712373:-	DYTN	70415	chr2:207530753:-	ONLY_REF_SPLICE	YES	6	0	0.84	1	0.2991	0.0199	{Klijn_CCL:Brain=1},THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-,DYTN->chr2:207516345-207583120:-,dystrotelin	SKNDZ_AUTONOMIC_GANGLIA	0.84	1	0.319	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	USP34--RP11-444A22.1	26	12	USP34	5010	chr2:61621988:-	RP11-444A22.1	78618	chr2:59739340:-	ONLY_REF_SPLICE	YES	22	0	0.63	1	0.2592	0.1196	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,RP11-444A22.1->chr2:59445815-60327335:-	SKNDZ_AUTONOMIC_GANGLIA	0.63	1	0.3788	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	TIMELESS--TBC1D30	26	3	TIMELESS	1094	chr12:56843094:-	TBC1D30	20390	chr12:65179661:+	ONLY_REF_SPLICE	YES	29	0	0.5	1	0.2592	0.0299	TIMELESS->chr12:56810903-56843187:-,timeless_circadian_clock,TBC1D30->TBC1_domain_family_member_30,chr12:65174589-65274812:+	SKNDZ_AUTONOMIC_GANGLIA	0.5	1	0.2891	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	24	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	2	1	0.94	0.2392	0.0698	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKNDZ_AUTONOMIC_GANGLIA	0.94	1	0.309	TRUE	477	1352	189	275	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NIPA2--POLA1	21	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2093	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.2093	TRUE	46	1352	75	139	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	OLA1--LRRFIP1	20	2	OLA1	7507	chr2:175006553:-	LRRFIP1	58998	chr2:238722235:+	ONLY_REF_SPLICE	YES	152	0	0.13	1	0.1994	0.0199	{Klijn_CCL:Brain=1},OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-,LRRFIP1->Oncogene{Bushman},chr2:238536219-238722325:+,leucine_rich_repeat_(in_FLII)_interacting_protein_1	SKNDZ_AUTONOMIC_GANGLIA	0.13	1	0.2193	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	DBI--SPAG16	18	5	DBI	2385	chr2:120125881:+	SPAG16	30245	chr2:214878675:+	ONLY_REF_SPLICE	YES	610	0	0.04	1	0.1794	0.0498	DBI->chr2:120124497-120130126:+,diazepam_binding_inhibitor_(GABA_receptor_modulator,_acyl-CoA_binding_protein),SPAG16->chr2:214149113-215275225:+,sperm_associated_antigen_16	SKNDZ_AUTONOMIC_GANGLIA	0.04	1	0.2292	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	18	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1794	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.1794	FALSE	13	9	0	364	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	PLXDC1--TAF13	15	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1495	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.1495	TRUE	7	10	0	216	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	C15orf57--CBX3	13	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	32	35	0.38	0.36	0.1296	0.0698	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKNDZ_AUTONOMIC_GANGLIA	0.36	0.38	0.1994	TRUE	267	562	48	632	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NBAS--AC130710.1	12	8	NBAS	29878	chr2:15534351:-	AC130710.1	64163	chr2:16213426:+	ONLY_REF_SPLICE	YES	19	6	0.51	0.77	0.1196	0.0797	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC130710.1->chr2:16190549-16225923:+	SKNDZ_AUTONOMIC_GANGLIA	0.51	0.77	0.1993	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	AC027612.6--RPS27A	13	3	AC027612.6	3373	chr2:91843394:-	RPS27A	15069	chr2:55459944:+	ONLY_REF_SPLICE	YES	170	38	0.09	0.3	0.1296	0.0299	AC027612.6->chr2:91805186-91847998:-,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	SKNDZ_AUTONOMIC_GANGLIA	0.09	0.3	0.1595	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	DCUN1D1--UTP6	11	4	DCUN1D1	6827	chr3:182679014:-	UTP6	39892	chr17:30190535:-	ONLY_REF_SPLICE	YES	54	196	0.22	0.07	0.1097	0.0399	{Klijn_CCL:Brain=1},DCUN1D1->chr3:182655862-182703741:-,defective_in_cullin_neddylation_1_domain_containing_1,UTP6->UTP6,_small_subunit_processome_component,chr17:30187923-30228784:-	SKNDZ_AUTONOMIC_GANGLIA	0.07	0.22	0.1496	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	12	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1196	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.1196	FALSE	13	9	0	364	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	11	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1097	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.1097	FALSE	292	1546	117	613	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NBAS--AC008278.2	7	10	NBAS	25384	chr2:15557651:-	AC008278.2	63807	chr2:15705189:+	ONLY_REF_SPLICE	YES	23	15	0.42	0.53	0.0698	0.0997	LOCAL_INVERSION:-:+:[2840],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC008278.2->chr2:15704294-15713992:+	SKNDZ_AUTONOMIC_GANGLIA	0.42	0.53	0.1695	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	RP11-408A13.2--NFIB	7	5	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	13	1	0.48	0.0698	0.0498	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	SKNDZ_AUTONOMIC_GANGLIA	0.48	1	0.1196	TRUE	0	14	0	20	14	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	SPG11--MRPL52	8	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0797	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0797	TRUE	38	11	0	19	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	ZNF654--HMGB2	8	0	ZNF654	1688	chr3:88188941:+	HMGB2	12544	chr4:174253295:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0797	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0797	TRUE	0	0	0	518	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	KANSL1--ARL17B	4	13	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	72	56	0.19	0.23	0.0399	0.1296	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SKNDZ_AUTONOMIC_GANGLIA	0.19	0.23	0.1695	TRUE	105	90	7	93	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	BAZ2B--MYT1L	6	4	BAZ2B	6250	chr2:160335086:-	MYT1L	88401	chr2:1889266:-	ONLY_REF_SPLICE	YES	14	1	0.42	0.91	0.0598	0.0399	BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-,MYT1L->chr2:1792885-2335032:-,myelin_transcription_factor_1_like	SKNDZ_AUTONOMIC_GANGLIA	0.42	0.91	0.0997	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	C15orf57--CBX3	6	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	32	37	0.24	0.21	0.0598	0.0399	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKNDZ_AUTONOMIC_GANGLIA	0.21	0.24	0.0997	TRUE	267	562	48	632	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	CSRNP3--TUBA3E	6	4	CSRNP3	8301	chr2:166451723:+	TUBA3E	26670	chr2:130953944:-	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0598	0.0399	CSRNP3->chr2:166326157-166545917:+,cysteine_and_serine_rich_nuclear_protein_3,TUBA3E->chr2:130949318-130956034:-,tubulin_alpha_3e	SKNDZ_AUTONOMIC_GANGLIA	0.77	1	0.0997	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	MT-TA--MT-TC	6	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0.0299	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0897	FALSE	462	80	0	856	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NPM1P24--SET	6	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	33	1316	0.17	0.01	0.0598	0.01	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNDZ_AUTONOMIC_GANGLIA	0.01	0.17	0.0698	FALSE	0	0	0	434	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	ANKRD11--RNF166	6	0	ANKRD11	4629	chr16:89484692:-	RNF166	43906	chr16:88765493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0598	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,RNF166->chr16:88762903-88772829:-,ring_finger_protein_166	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0598	TRUE	1	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	ANKRD11--SNAI3	6	0	ANKRD11	4629	chr16:89484692:-	SNAI3	39408	chr16:88748122:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0598	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,SNAI3->chr16:88744090-88752901:-,snail_family_zinc_finger_3	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	CPSF6--C9orf3	6	0	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0598	0	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0598	TRUE	53	99	2	44	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	PPP2R1A--ARHGEF1	6	0	PPP2R1A	10964	chr19:52719916:+	ARHGEF1	43669	chr19:42433807:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0598	0	PPP2R1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:52693292-52730687:+,protein_phosphatase_2_regulatory_subunit_A,_alpha,ARHGEF1->Rho_guanine_nucleotide_exchange_factor_1,chr19:42387228-42434302:+	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0598	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0598	TRUE	465	1949	224	605	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	BAZ2B--MYT1L	5	3	BAZ2B	6250	chr2:160335086:-	MYT1L	90928	chr2:1855475:-	ONLY_REF_SPLICE	YES	14	0	0.36	1	0.0498	0.0299	BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-,MYT1L->chr2:1792885-2335032:-,myelin_transcription_factor_1_like	SKNDZ_AUTONOMIC_GANGLIA	0.36	1	0.0797	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	C2orf43--AC007092.1	5	3	C2orf43	5940	chr2:20974570:-	AC007092.1	19245	chr2:58883785:+	ONLY_REF_SPLICE	YES	49	0	0.14	1	0.0498	0.0299	C2orf43->chr2:20883788-21022882:-,AC007092.1->chr2:58654934-59290901:+	SKNDZ_AUTONOMIC_GANGLIA	0.14	1	0.0797	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	MIER1--IL23R	5	3	MIER1	18238	chr1:67442405:+	IL23R	30965	chr1:67648519:+	ONLY_REF_SPLICE	YES	34	0	0.19	1	0.0498	0.0299	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,IL23R->chr1:67632083-67725662:+,interleukin_23_receptor	SKNDZ_AUTONOMIC_GANGLIA	0.19	1	0.0797	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	MEMO1--TRIB2	5	2	MEMO1	2044	chr2:32235256:-	TRIB2	23294	chr2:12863386:+	ONLY_REF_SPLICE	YES	32	125	0.18	0.05	0.0498	0.0199	MEMO1->chr2:32090129-32236299:-,mediator_of_cell_motility_1,TRIB2->chr2:12857015-12882860:+,tribbles_pseudokinase_2	SKNDZ_AUTONOMIC_GANGLIA	0.05	0.18	0.0697	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	METAP1D--FARSB	4	6	METAP1D	1477	chr2:172864966:+	FARSB	34788	chr2:223464802:-	INCL_NON_REF_SPLICE	YES	2	107	0.83	0.09	0.0399	0.0598	METAP1D->chr2:172864490-172947158:+,methionyl_aminopeptidase_type_1D_(mitochondrial),FARSB->chr2:223435255-223521056:-,phenylalanyl-tRNA_synthetase_beta_subunit	SKNDZ_AUTONOMIC_GANGLIA	0.09	0.83	0.0997	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NBAS--AC130710.1	3	9	NBAS	29878	chr2:15534351:-	AC130710.1	63116	chr2:16190753:+	INCL_NON_REF_SPLICE	YES	19	8	0.39	0.6	0.0299	0.0897	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC130710.1->chr2:16190549-16225923:+	SKNDZ_AUTONOMIC_GANGLIA	0.39	0.6	0.1196	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0498	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0498	TRUE	0	0	0	434	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	5	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0498	FALSE	125	705	46	456	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	AC027612.6--RPS27A	4	3	AC027612.6	3821	chr2:91842946:-	RPS27A	15069	chr2:55459944:+	ONLY_REF_SPLICE	YES	149	38	0.04	0.16	0.0399	0.0299	AC027612.6->chr2:91805186-91847998:-,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	SKNDZ_AUTONOMIC_GANGLIA	0.04	0.16	0.0698	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	4	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	32	0	0.18	1	0.0399	0.0299	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKNDZ_AUTONOMIC_GANGLIA	0.18	1	0.0698	FALSE	164	806	69	479	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	GNGT1--AC002076.10	4	1	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0399	0.01	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	SKNDZ_AUTONOMIC_GANGLIA	0.71	1	0.0499	FALSE	0	28	0	37	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NBAS--AC008278.2	4	1	NBAS	25384	chr2:15557651:-	AC008278.2	64941	chr2:15713608:+	ONLY_REF_SPLICE	YES	23	58	0.18	0.08	0.0399	0.01	LOCAL_INVERSION:-:+:[2840],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC008278.2->chr2:15704294-15713992:+	SKNDZ_AUTONOMIC_GANGLIA	0.08	0.18	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	33	1309	0.13	0	0.0399	0.01	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNDZ_AUTONOMIC_GANGLIA	0	0.13	0.0499	FALSE	0	0	0	434	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NPM1P24--SET	4	1	NPM1P24	1533	chr10:74677760:-	SET	12307	chr9:131456202:+	INCL_NON_REF_SPLICE	NO	33	1324	0.13	0	0.0399	0.01	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNDZ_AUTONOMIC_GANGLIA	0	0.13	0.0499	FALSE	0	0	0	434	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	33	1305	0.13	0	0.0399	0.01	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNDZ_AUTONOMIC_GANGLIA	0	0.13	0.0499	FALSE	0	0	0	434	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	3	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	2	1	0.8	0.0299	0.0498	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKNDZ_AUTONOMIC_GANGLIA	0.8	1	0.0797	TRUE	274	363	69	150	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	METAP1D--FARSB	2	6	METAP1D	2496	chr2:172886771:+	FARSB	34788	chr2:223464802:-	ONLY_REF_SPLICE	YES	2	107	0.8	0.07	0.0199	0.0598	METAP1D->chr2:172864490-172947158:+,methionyl_aminopeptidase_type_1D_(mitochondrial),FARSB->chr2:223435255-223521056:-,phenylalanyl-tRNA_synthetase_beta_subunit	SKNDZ_AUTONOMIC_GANGLIA	0.07	0.8	0.0797	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	DPY30--EIF2AK3	3	1	DPY30	1534	chr2:32264348:-	EIF2AK3	22019	chr2:88913371:-	ONLY_REF_SPLICE	YES	374	12	0.01	0.25	0.0299	0.01	DPY30->chr2:32092878-32264881:-,dpy-30,_histone_methyltransferase_complex_regulatory_subunit,EIF2AK3->chr2:88856259-88927094:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_3	SKNDZ_AUTONOMIC_GANGLIA	0.01	0.25	0.0399	FALSE	0	0	0	1	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	IPP--YIPF1	3	1	IPP	3828	chr1:46206573:-	YIPF1	25701	chr1:54332597:-	ONLY_REF_SPLICE	YES	6	35	0.4	0.1	0.0299	0.01	IPP->chr1:46159996-46216322:-,intracisternal_A_particle-promoted_polypeptide,YIPF1->Yip1_domain_family_member_1,chr1:54317392-54356407:-	SKNDZ_AUTONOMIC_GANGLIA	0.1	0.4	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NBAS--AC130710.1	3	1	NBAS	29878	chr2:15534351:-	AC130710.1	66233	chr2:16221020:+	ONLY_REF_SPLICE	YES	19	17	0.17	0.19	0.0299	0.01	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC130710.1->chr2:16190549-16225923:+	SKNDZ_AUTONOMIC_GANGLIA	0.17	0.19	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	RP11-120I21.2--RALYL	2	5	RP11-120I21.2	3279	chr8:84996478:+	RALYL	12120	chr8:85441534:+	ONLY_REF_SPLICE	YES	42	4	0.14	0.64	0.0199	0.0498	NEIGHBORS[42504],RP11-120I21.2->chr8:84824948-85052518:+,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	SKNDZ_AUTONOMIC_GANGLIA	0.14	0.64	0.0697	FALSE	0	8	1	4	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	RP11-444A22.1--AC007131.2	3	1	RP11-444A22.1	3433	chr2:59739144:-	AC007131.2	23307	chr2:59466036:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0.01	GTEx_FI:{Testis=[count:11=pct:10.5]},RP11-444A22.1->chr2:59445815-60327335:-,AC007131.2->chr2:59465851-59960531:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0399	TRUE	8	0	0	2	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	ARF3--STAC3	3	0	ARF3	1242	chr12:49351093:-	STAC3	19025	chr12:57638748:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	ARF3->ADP_ribosylation_factor_3,chr12:49329506-49351334:-,STAC3->SH3_and_cysteine_rich_domain_3,chr12:57637236-57644976:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0299	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	C2orf43--AC007092.1	2	4	C2orf43	7175	chr2:20939731:-	AC007092.1	19245	chr2:58883785:+	ONLY_REF_SPLICE	YES	37	0	0.14	1	0.0199	0.0399	C2orf43->chr2:20883788-21022882:-,AC007092.1->chr2:58654934-59290901:+	SKNDZ_AUTONOMIC_GANGLIA	0.14	1	0.0598	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	FAM208B--GDI2	3	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0299	TRUE	0	0	0	11	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0299	FALSE	462	80	0	856	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	PPHLN1--RP11-551L14.1	3	0	PPHLN1	1215	chr12:42632463:+	RP11-551L14.1	46986	chr12:31289660:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0	PPHLN1->chr12:42632249-42853517:+,periphilin_1,RP11-551L14.1->chr12:31264586-31359088:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0299	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	PPHLN1--RP11-551L14.1	2	3	PPHLN1	1215	chr12:42632463:+	RP11-551L14.1	44872	chr12:31292177:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0199	0.0299	PPHLN1->chr12:42632249-42853517:+,periphilin_1,RP11-551L14.1->chr12:31264586-31359088:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	CTSC--MAML2	2	2	CTSC	11704	chr11:88045556:-	MAML2	26089	chr11:95826681:-	ONLY_REF_SPLICE	YES	215	2	0.02	0.67	0.0199	0.0199	CTSC->cathepsin_C,chr11:88026760-88070955:-,MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2	SKNDZ_AUTONOMIC_GANGLIA	0.02	0.67	0.0398	TRUE	0	0	0	1	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	RP11-120I21.2--RALYL	2	2	RP11-120I21.2	2184	chr8:84956839:+	RALYL	11088	chr8:85258354:+	ONLY_REF_SPLICE	YES	55	4	0.07	0.5	0.0199	0.0199	NEIGHBORS[42504],RP11-120I21.2->chr8:84824948-85052518:+,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	SKNDZ_AUTONOMIC_GANGLIA	0.07	0.5	0.0398	FALSE	0	0	0	2	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	TULP4--RP11-732M18.3	2	2	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	35	3	0.1	0.57	0.0199	0.0199	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	SKNDZ_AUTONOMIC_GANGLIA	0.1	0.57	0.0398	TRUE	126	140	6	21	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	AC027612.6--RPS27A	2	1	AC027612.6	3821	chr2:91842946:-	RPS27A	16380	chr2:55461255:+	ONLY_REF_SPLICE	YES	149	2257	0.02	0	0.0199	0.01	AC027612.6->chr2:91805186-91847998:-,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	SKNDZ_AUTONOMIC_GANGLIA	0	0.02	0.0299	FALSE	0	0	0	1	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	ARF3--STAC3	2	1	ARF3	1242	chr12:49351093:-	STAC3	15498	chr12:57643091:-	ONLY_REF_SPLICE	YES	149	2	0.02	0.6	0.0199	0.01	ARF3->ADP_ribosylation_factor_3,chr12:49329506-49351334:-,STAC3->SH3_and_cysteine_rich_domain_3,chr12:57637236-57644976:-	SKNDZ_AUTONOMIC_GANGLIA	0.02	0.6	0.0299	TRUE	0	0	0	1	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	DSCR4--KCNJ6	2	1	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0199	0.01	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	SKNDZ_AUTONOMIC_GANGLIA	0.43	1	0.0299	FALSE	0	24	0	27	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	RNF152--RP11-879F14.1	2	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0199	0.01	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	SKNDZ_AUTONOMIC_GANGLIA	0.3	1	0.0299	FALSE	275	472	65	43	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	ZNF736--CHMP1A	2	1	ZNF736	8361	chr7:63797360:+	CHMP1A	24290	chr16:89713739:-	ONLY_REF_SPLICE	YES	21	275	0.12	0.01	0.0199	0.01	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adipose_Tissue=[count:2=pct:0.7],Breast=[count:2=pct:1.8],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=25;pct=0.29%;dist=Thyroid=4,Cells_-_Transformed_fibroblasts=3,Breast_-_Mammary_Tissue=2,Esophagus_-_Mucosa=2,Ovary=1,Pancreas=1,Lung=1,Vagina=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Colon_-_Sigmoid=1,Testis=1,Colon_-_Transverse=1},ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SKNDZ_AUTONOMIC_GANGLIA	0.01	0.12	0.0299	FALSE	10	14	2	10	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	ARF3--STAC3	2	0	ARF3	2454	chr12:49349881:-	STAC3	17681	chr12:57640684:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	ARF3->ADP_ribosylation_factor_3,chr12:49329506-49351334:-,STAC3->SH3_and_cysteine_rich_domain_3,chr12:57637236-57644976:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	C21orf91--EML5	2	0	C21orf91	2195	chr21:19190509:-	EML5	57419	chr14:89087270:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	C21orf91->chr21:19161284-19191703:-,chromosome_21_open_reading_frame_91,EML5->chr14:89078775-89259096:-,echinoderm_microtubule_associated_protein_like_5	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	CPSF6--PGBD2	2	0	CPSF6	11046	chr12:69656342:+	PGBD2	23586	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Adipose_-_Subcutaneous=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	0	7	0	6	2	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	CTD-2281E23.2--DLGAP2	2	0	CTD-2281E23.2	3418	chr8:1208883:+	DLGAP2	8510	chr8:1449532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_FI:{Testis=[count:34=pct:32.4],Brain=[count:24=pct:3.6],Pituitary=[count:4=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Thyroid=[count:2=pct:1.1]},CTD-2281E23.2->chr8:1054882-1212580:+,DLGAP2->chr8:1449532-1656642:+,discs_large_homolog_associated_protein_2	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	49	61	1	13	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	LIMS3L--DDX1	2	0	LIMS3L	5464	chr2:111214607:-	DDX1	30996	chr2:15743316:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LIMS3L->chr2:111160511-111230652:-,chr2:111222628-111230511:-,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	145	312	16	51	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	RP11-578F21.12--APBA2	2	0	RP11-578F21.12	13975	chr15:29083968:+	APBA2	26232	chr15:29213843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	NEIGHBORS[28268],RP11-578F21.12->chr15:29034810-29101361:+,APBA2->amyloid_beta_precursor_protein_binding_family_A_member_2,chr15:29129629-29410518:+	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	FALSE	0	0	0	1	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	SPECC1L--AP000347.4	2	0	SPECC1L	3460	chr22:24698352:+	AP000347.4	29234	chr22:23981129:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,AP000347.4->chr22:23980679-23982949:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	SS18L1--TAF4	2	0	SS18L1	1124	chr20:60718945:+	TAF4	40212	chr20:60551391:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_FI:{Skin=[count:2=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Pancreas=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[77956],SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	1	2	0	1	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	SS18L1--TAF4	2	0	SS18L1	1124	chr20:60718945:+	TAF4	21561	chr20:60589763:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_FI:{Skin=[count:2=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Pancreas=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[77956],SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	2	5	0	8	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	SUGT1--SLCO3A1	2	0	SUGT1	10914	chr13:53250455:+	SLCO3A1	49652	chr15:92705986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	SUGT1->SGT1_homolog,_MIS12_kinetochore_complex_assembly_cochaperone,chr13:53226844-53275044:+,SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	TEAD1--SOX6	2	0	TEAD1	17133	chr11:12951873:+	SOX6	33154	chr11:16633807:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,SOX6->SRY-box_6,chr11:15987995-16761138:-	SKNDZ_AUTONOMIC_GANGLIA	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	HERC4--CHMP1A	1	2	HERC4	3466	chr10:69832640:-	CHMP1A	48718	chr16:89713739:-	ONLY_REF_SPLICE	NO	67	275	0.04	0.01	0.01	0.0199	HERC4->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_4,chr10:69681665-69835105:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SKNDZ_AUTONOMIC_GANGLIA	0.01	0.04	0.0299	FALSE	0	0	0	1	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	RP11-120I21.2--RALYL	1	2	RP11-120I21.2	1123	chr8:84825070:+	RALYL	12120	chr8:85441534:+	ONLY_REF_SPLICE	YES	51	4	0.06	0.43	0.01	0.0199	NEIGHBORS[42504],RP11-120I21.2->chr8:84824948-85052518:+,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	SKNDZ_AUTONOMIC_GANGLIA	0.06	0.43	0.0299	FALSE	0	3	0	2	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	RP11-120I21.2--RALYL	1	2	RP11-120I21.2	1123	chr8:84825070:+	RALYL	11088	chr8:85258354:+	ONLY_REF_SPLICE	NO	51	4	0.06	0.43	0.01	0.0199	NEIGHBORS[42504],RP11-120I21.2->chr8:84824948-85052518:+,RALYL->RALY_RNA_binding_protein-like,chr8:85095022-85834079:+	SKNDZ_AUTONOMIC_GANGLIA	0.06	0.43	0.0299	FALSE	0	2	0	1	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	2	2	0.6	0.6	0.01	0.0199	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKNDZ_AUTONOMIC_GANGLIA	0.6	0.6	0.0299	TRUE	16	11	2	20	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	USP34--RP11-444A22.1	1	2	USP34	5010	chr2:61621988:-	RP11-444A22.1	79815	chr2:59445859:-	ONLY_REF_SPLICE	YES	22	0	0.12	1	0.01	0.0199	USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,RP11-444A22.1->chr2:59445815-60327335:-	SKNDZ_AUTONOMIC_GANGLIA	0.12	1	0.0299	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	APMAP--DEFB119	1	1	APMAP	3619	chr20:24959403:-	DEFB119	17825	chr20:29965242:-	ONLY_REF_SPLICE	YES	202	0	0.01	1	0.01	0.01	APMAP->adipocyte_plasma_membrane_associated_protein,chr20:24943561-24973615:-,DEFB119->chr20:29964967-29978406:-,defensin_beta_119	SKNDZ_AUTONOMIC_GANGLIA	0.01	1	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	CALU--DDX1	1	1	CALU	3393	chr7:128388858:+	DDX1	26075	chr2:15753348:+	ONLY_REF_SPLICE	YES	424	8818	0	0	0.01	0.01	CALU->calumenin,chr7:128379346-128411861:+,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	SKNDZ_AUTONOMIC_GANGLIA	0	0	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	CELF2--CNTN5	1	1	CELF2	9538	chr10:11312787:+	CNTN5	29902	chr11:99196077:+	ONLY_REF_SPLICE	YES	1	17	0.67	0.11	0.01	0.01	CELF2->CUGBP,_Elav-like_family_member_2,chr10:11047259-11378674:+,CNTN5->chr11:98891683-100229616:+,contactin_5	SKNDZ_AUTONOMIC_GANGLIA	0.11	0.67	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	KANSL1--ARL17B	1	1	KANSL1	9741	chr17:44171926:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	48	6	0.04	0.25	0.01	0.01	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SKNDZ_AUTONOMIC_GANGLIA	0.04	0.25	0.02	TRUE	51	25	1	17	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	PHF20L1--EBAG9	1	1	PHF20L1	2397	chr8:133790157:+	EBAG9	42794	chr8:110563039:+	ONLY_REF_SPLICE	YES	33	29	0.06	0.06	0.01	0.01	PHF20L1->PHD_finger_protein_20-like_1,chr8:133787618-133861052:+,EBAG9->Oncogene{Bushman},chr8:110551940-110578225:+,estrogen_receptor_binding_site_associated,_antigen,_9	SKNDZ_AUTONOMIC_GANGLIA	0.06	0.06	0.02	TRUE	0	0	0	1	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	RBBP5--DSTYK	1	1	RBBP5	1161	chr1:205090983:-	DSTYK	21252	chr1:205138960:-	ONLY_REF_SPLICE	YES	28	20	0.07	0.09	0.01	0.01	LOCAL_REARRANGEMENT:-:[20489],RBBP5->Oncogene{Bushman},chr1:205055270-205091143:-,retinoblastoma_binding_protein_5,DSTYK->chr1:205111632-205180727:-,dual_serine/threonine_and_tyrosine_protein_kinase	SKNDZ_AUTONOMIC_GANGLIA	0.07	0.09	0.02	TRUE	0	0	0	1	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	RNF152--RP11-879F14.1	1	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	YES	7	0	0.22	1	0.01	0.01	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	SKNDZ_AUTONOMIC_GANGLIA	0.22	1	0.02	FALSE	119	124	24	18	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	SMC3--PDCD4	1	1	SMC3	2323	chr10:112328771:+	PDCD4	30091	chr10:112640991:+	ONLY_REF_SPLICE	YES	349	235	0.01	0.01	0.01	0.01	SMC3->chr10:112327449-112364394:+,structural_maintenance_of_chromosomes_3,PDCD4->Oncogene{Bushman},chr10:112631565-112659764:+,programmed_cell_death_4_(neoplastic_transformation_inhibitor)	SKNDZ_AUTONOMIC_GANGLIA	0.01	0.01	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000366
SKNDZ_AUTONOMIC_GANGLIA	SS18L1--PSMA7	1	1	SS18L1	1124	chr20:60718945:+	PSMA7	21021	chr20:60716000:-	ONLY_REF_SPLICE	YES	57	2242	0.03	0	0.01	0.01	LOCAL_INVERSION:+:-:[326],SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	SKNDZ_AUTONOMIC_GANGLIA	0	0.03	0.02	FALSE	0	1	0	2	1	FALSE	ACH-000366
NCIH2110_LUNG	SAE1--RPL13A	819	175	SAE1	3734	chr19:47634285:+	RPL13A	23025	chr19:49994682:+	ONLY_REF_SPLICE	YES	147	2114	0.87	0.32	7.3376	1.5679	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	NCIH2110_LUNG	0.32	0.87	8.9055	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	PLAUR--RP11-115A15.1	238	42	PLAUR	4732	chr19:44169468:-	RP11-115A15.1	16448	chr1:81050048:-	ONLY_REF_SPLICE	YES	297	0	0.49	1	2.1323	0.3763	PLAUR->Oncogene{Bushman},chr19:44150247-44174699:-,plasminogen_activator,_urokinase_receptor,RP11-115A15.1->chr1:81000663-81050048:-	NCIH2110_LUNG	0.49	1	2.5086	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	PIK3R3--AP2A1	189	36	PIK3R3	3451	chr1:46597519:-	AP2A1	22290	chr19:50285014:+	ONLY_REF_SPLICE	YES	32	79	0.88	0.74	1.6933	0.3225	{Klijn_CCL:Lung=1},PIK3R3->chr1:46505812-46642160:-,phosphoinositide-3-kinase_regulatory_subunit_3,AP2A1->adaptor_related_protein_complex_2_alpha_1_subunit,chr19:50270225-50310370:+	NCIH2110_LUNG	0.74	0.88	2.0158	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	ZNF331--PEG3	118	50	ZNF331	7495	chr19:54042536:+	PEG3	22076	chr19:57347472:-	ONLY_REF_SPLICE	YES	27	0	0.86	1	1.0572	0.448	HGNC_GENEFAM,PROTCLUST,ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331,PEG3->Oncogene{Bushman},chr19:57321445-57352096:-,paternally_expressed_3	NCIH2110_LUNG	0.86	1	1.5052	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	TIMM23B--LINC00843	111	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9945	0.215	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2110_LUNG	0.99	1	1.2095	TRUE	508	994	45	981	0	FALSE	ACH-000929
NCIH2110_LUNG	SAE1--RPL13A	59	191	SAE1	3818	chr19:47634369:+	RPL13A	23025	chr19:49994682:+	ONLY_REF_SPLICE	YES	194	2114	0.56	0.11	0.5286	1.7112	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	NCIH2110_LUNG	0.11	0.56	2.2398	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	GPBP1L1--CTD-3187F8.14	92	17	GPBP1L1	3538	chr1:46151248:-	CTD-3187F8.14	24898	chr19:51668530:-	ONLY_REF_SPLICE	YES	94	0	0.54	1	0.8242	0.1523	GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-,CTD-3187F8.14->chr19:51656180-51685222:-	NCIH2110_LUNG	0.54	1	0.9765	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	HNRNPR--TXLNA	86	30	HNRNPR	5264	chr1:23660011:-	TXLNA	26050	chr1:32653555:+	ONLY_REF_SPLICE	YES	200	96	0.37	0.55	0.7705	0.2688	{Klijn_CCL:Lung=1},HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,TXLNA->chr1:32645287-32663886:+,taxilin_alpha	NCIH2110_LUNG	0.37	0.55	1.0393	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RAB4B--ACTN4	73	49	RAB4B	1176	chr19:41284296:+	ACTN4	14370	chr19:39191240:+	ONLY_REF_SPLICE	YES	112	698	0.52	0.15	0.654	0.439	RAB4B->RAB4B,_member_RAS_oncogene_family,chr19:41284121-41302847:+,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+	NCIH2110_LUNG	0.15	0.52	1.093	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	TIMM23--RP11-464F9.1	76	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	186	5	0.29	0.94	0.6809	0.009	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2110_LUNG	0.29	0.94	0.6899	TRUE	519	3926	326	965	0	FALSE	ACH-000929
NCIH2110_LUNG	ARHGAP29--COL24A1	55	13	ARHGAP29	19169	chr1:94654393:-	COL24A1	42130	chr1:86591897:-	ONLY_REF_SPLICE	YES	53	0	0.56	1	0.4928	0.1165	{Klijn_CCL:Lung=1},ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-,COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1	NCIH2110_LUNG	0.56	1	0.6093	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RAB13--AC068279.3	50	7	RAB13	5199	chr1:153954497:-	AC068279.3	8899	chr2:87607561:-	INCL_NON_REF_SPLICE	YES	292	0	0.16	1	0.448	0.0627	RAB13->RAB13,_member_RAS_oncogene_family,chr1:153954127-153958834:-,AC068279.3->chr2:87607003-87607890:-	NCIH2110_LUNG	0.16	1	0.5107	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RP4-594I10.3--MECR	39	12	RP4-594I10.3	2370	chr1:24878379:-	MECR	17157	chr1:29528557:-	ONLY_REF_SPLICE	YES	0	27	1	0.65	0.3494	0.1075	RP4-594I10.3->chr1:24865292-24882515:-,MECR->chr1:29519385-29557454:-,mitochondrial_trans-2-enoyl-CoA_reductase	NCIH2110_LUNG	0.65	1	0.4569	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	3	153	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	15	0	0.91	1	0.0269	1.3708	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.91	1	1.3977	FALSE	344	827	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	3	153	MT-ND4	1213	chrM:10972:+	MT-ND4L	5376	chrM:10467:+	INCL_NON_REF_SPLICE	YES	15	0	0.91	1	0.0269	1.3708	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.91	1	1.3977	FALSE	344	826	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	4	148	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	12	0	0.93	1	0.0358	1.326	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.93	1	1.3618	FALSE	344	826	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	HNRNPR--TXLNA	32	35	HNRNPR	5264	chr1:23660011:-	TXLNA	24958	chr1:32650126:+	ONLY_REF_SPLICE	YES	200	87	0.25	0.44	0.2867	0.3136	{Klijn_CCL:Lung=1},HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,TXLNA->chr1:32645287-32663886:+,taxilin_alpha	NCIH2110_LUNG	0.25	0.44	0.6003	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	14	106	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	3769	0	0.03	1	0.1254	0.9497	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.03	1	1.0751	FALSE	344	827	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	3	145	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	7	0	0.95	1	0.0269	1.2991	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.95	1	1.326	FALSE	344	826	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	11	105	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.0986	0.9407	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.97	1	1.0393	FALSE	344	821	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	18	70	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	8	8	0.92	0.92	0.1613	0.6271	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	0.92	0.92	0.7884	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	3	129	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	5	0	0.96	1	0.0269	1.1557	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.96	1	1.1826	FALSE	344	826	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	BCAR3--STRN4	33	7	BCAR3	8673	chr1:94140170:-	STRN4	32862	chr19:47242145:-	ONLY_REF_SPLICE	YES	37	30	0.52	0.57	0.2957	0.0627	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,STRN4->chr19:47222764-47250251:-,striatin_4	NCIH2110_LUNG	0.52	0.57	0.3584	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	STK11--HDAC4	33	6	STK11	3716	chr19:1207202:+	HDAC4	31105	chr2:240085619:-	ONLY_REF_SPLICE	YES	20	11	0.66	0.78	0.2957	0.0538	STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11,HDAC4->Oncogene{Bushman},chr2:239969864-240323348:-,histone_deacetylase_4	NCIH2110_LUNG	0.66	0.78	0.3495	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	TBCA--DEDD2	31	11	TBCA	2304	chr5:77072029:-	DEDD2	16097	chr19:42719404:-	ONLY_REF_SPLICE	YES	193	21	0.18	0.67	0.2777	0.0986	TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A,DEDD2->chr19:42702750-42724292:-,death_effector_domain_containing_2	NCIH2110_LUNG	0.18	0.67	0.3763	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	MT-TA--MT-TC	33	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2957	0.0179	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2110_LUNG	1	1	0.3136	FALSE	462	80	0	856	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	5	109	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	6	0	0.95	1	0.0448	0.9766	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.95	1	1.0214	FALSE	344	826	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	14	70	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	8	8	0.91	0.91	0.1254	0.6271	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	0.91	0.91	0.7525	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND5--MT-ATP8	30	6	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2554	37	0.01	0.49	0.2688	0.0538	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2110_LUNG	0.01	0.49	0.3226	FALSE	43	37	8	105	0	FALSE	ACH-000929
NCIH2110_LUNG	LENG8--ZNF573	29	1	LENG8	1420	chr19:54960484:+	ZNF573	16690	chr19:38307860:-	INCL_NON_REF_SPLICE	YES	26	0	0.54	1	0.2598	0.009	LENG8->chr19:54960065-54973217:+,leukocyte_receptor_cluster_(LRC)_member_8,ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573	NCIH2110_LUNG	0.54	1	0.2688	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	NFIA--SCP2	24	6	NFIA	7204	chr1:61554352:+	SCP2	38904	chr1:53440441:+	ONLY_REF_SPLICE	YES	5	24	0.86	0.56	0.215	0.0538	{Klijn_CCL:Lung=1},NFIA->chr1:61330931-61928465:+,nuclear_factor_I_A,SCP2->chr1:53392901-53517375:+,sterol_carrier_protein_2	NCIH2110_LUNG	0.56	0.86	0.2688	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	GPBP1L1--CTD-3187F8.14	25	0	GPBP1L1	2121	chr1:46152665:-	CTD-3187F8.14	24898	chr19:51668530:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.224	0	GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-,CTD-3187F8.14->chr19:51656180-51685222:-	NCIH2110_LUNG	1	1	0.224	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	MT-ND6--MT-TE	24	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.215	0.0269	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2110_LUNG	1	1	0.2419	FALSE	499	1288	110	792	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	4	76	MT-ND4	1144	chrM:10903:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	10	1	0.89	0.99	0.0358	0.6809	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.89	0.99	0.7167	FALSE	344	826	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	SAE1--RPL13A	18	19	SAE1	3689	chr19:47634240:+	RPL13A	23025	chr19:49994682:+	INCL_NON_REF_SPLICE	YES	23	2114	0.62	0.02	0.1613	0.1702	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	NCIH2110_LUNG	0.02	0.62	0.3315	TRUE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	3	77	MT-CO3	1393	chrM:9599:+	MT-ATP6	5185	chrM:8927:+	INCL_NON_REF_SPLICE	YES	35	89	0.7	0.47	0.0269	0.6899	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	0.47	0.7	0.7168	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	3	73	MT-CO3	1220	chrM:9426:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	18	8	0.81	0.9	0.0269	0.654	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	0.81	0.9	0.6809	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	3	71	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	7	75	0.91	0.5	0.0269	0.6361	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	0.5	0.91	0.663	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	HNRNPR--TXLNA	18	10	HNRNPR	4150	chr1:23664247:-	TXLNA	24958	chr1:32650126:+	ONLY_REF_SPLICE	YES	270	87	0.09	0.24	0.1613	0.0896	{Klijn_CCL:Lung=1},HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,TXLNA->chr1:32645287-32663886:+,taxilin_alpha	NCIH2110_LUNG	0.09	0.24	0.2509	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	TSPAN1--TMEM59	19	6	TSPAN1	6290	chr1:46650980:+	TMEM59	12756	chr1:54513045:-	ONLY_REF_SPLICE	YES	896	298	0.03	0.08	0.1702	0.0538	{Klijn_CCL:Lung=1},TSPAN1->Oncogene{Bushman},chr1:46640745-46651630:+,tetraspanin_1,TMEM59->chr1:54497347-54519177:-,transmembrane_protein_59	NCIH2110_LUNG	0.03	0.08	0.224	TRUE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	HNRNPR--TXLNA	18	9	HNRNPR	4150	chr1:23664247:-	TXLNA	26050	chr1:32653555:+	ONLY_REF_SPLICE	YES	270	96	0.09	0.22	0.1613	0.0806	{Klijn_CCL:Lung=1},HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,TXLNA->chr1:32645287-32663886:+,taxilin_alpha	NCIH2110_LUNG	0.09	0.22	0.2419	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	4	63	MT-ND4	1050	chrM:10809:+	MT-ND4L	5523	chrM:10614:+	INCL_NON_REF_SPLICE	YES	3	0	0.96	1	0.0358	0.5644	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.96	1	0.6002	FALSE	344	821	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-TA--MT-TC	18	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1613	0.0269	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2110_LUNG	1	1	0.1882	FALSE	462	80	0	856	0	FALSE	ACH-000929
NCIH2110_LUNG	LENG8--ZNF573	18	1	LENG8	1424	chr19:54960488:+	ZNF573	16690	chr19:38307860:-	INCL_NON_REF_SPLICE	YES	62	0	0.23	1	0.1613	0.009	LENG8->chr19:54960065-54973217:+,leukocyte_receptor_cluster_(LRC)_member_8,ZNF573->chr19:38226734-38307940:-,zinc_finger_protein_573	NCIH2110_LUNG	0.23	1	0.1703	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RP11-96H19.1--RP11-446N19.1	17	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	2	0.87	0.91	0.1523	0.0269	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2110_LUNG	0.87	0.91	0.1792	FALSE	515	4851	409	746	0	FALSE	ACH-000929
NCIH2110_LUNG	FARSA--SMARCA4	16	5	FARSA	1488	chr19:13044364:-	SMARCA4	53451	chr19:11175869:+	ONLY_REF_SPLICE	YES	180	1	0.1	0.95	0.1433	0.0448	FARSA->chr19:13033293-13044851:-,phenylalanyl-tRNA_synthetase_alpha_subunit,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	NCIH2110_LUNG	0.1	0.95	0.1881	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	10	28	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8899	0	0	1	0.0896	0.2509	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0	1	0.3405	FALSE	328	800	43	304	0	FALSE	ACH-000929
NCIH2110_LUNG	NRIP1--AF127936.7	17	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1523	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2110_LUNG	1	1	0.1523	FALSE	292	1546	117	613	0	FALSE	ACH-000929
NCIH2110_LUNG	IMPACT--RP11-161I6.2	15	1	IMPACT	9847	chr18:22028147:+	RP11-161I6.2	25907	chr18:1906647:-	ONLY_REF_SPLICE	YES	38	0	0.3	1	0.1344	0.009	IMPACT->chr18:22006580-22033499:+,impact_RWD_domain_protein,RP11-161I6.2->chr18:1883525-2240847:-	NCIH2110_LUNG	0.3	1	0.1434	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	3	49	MT-CO3	1039	chrM:9245:+	MT-ATP6	4742	chrM:8484:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0.439	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	1	1	0.4659	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	3	49	MT-CO3	1038	chrM:9244:+	MT-ATP6	5225	chrM:8967:+	INCL_NON_REF_SPLICE	YES	0	14	1	0.79	0.0269	0.439	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	0.79	1	0.4659	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	3	47	MT-CO3	1033	chrM:9239:+	MT-ATP6	4768	chrM:8510:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0.4211	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	1	1	0.448	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	NRD1--CASZ1	13	2	NRD1	1531	chr1:52343947:-	CASZ1	38980	chr1:10765601:-	ONLY_REF_SPLICE	YES	105	2	0.12	0.88	0.1165	0.0179	NRD1->chr1:52254863-52344477:-,CASZ1->castor_zinc_finger_1,chr1:10696661-10856707:-	NCIH2110_LUNG	0.12	0.88	0.1344	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	BCKDHA--SIPA1L3	12	5	BCKDHA	2686	chr19:41903840:+	SIPA1L3	35073	chr19:38643480:+	ONLY_REF_SPLICE	YES	46	25	0.27	0.4	0.1075	0.0448	BCKDHA->branched_chain_keto_acid_dehydrogenase_E1,_alpha_polypeptide,chr19:41884215-41930910:+,SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3	NCIH2110_LUNG	0.27	0.4	0.1523	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RAB4B--ACTN4	1	49	RAB4B	2884	chr19:41286004:+	ACTN4	14370	chr19:39191240:+	ONLY_REF_SPLICE	YES	84	698	0.37	0.07	0.009	0.439	RAB4B->RAB4B,_member_RAS_oncogene_family,chr19:41284121-41302847:+,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+	NCIH2110_LUNG	0.07	0.37	0.448	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	AC015987.2--MT-ND1	11	7	AC015987.2	2544	chr7:135613085:+	MT-ND1	5683	chrM:3316:+	INCL_NON_REF_SPLICE	YES	128	0	0.12	1	0.0986	0.0627	AC015987.2->chr7:135611542-135613214:+,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH2110_LUNG	0.12	1	0.1613	FALSE	0	0	0	3	0	FALSE	ACH-000929
NCIH2110_LUNG	GPBP1L1--CTD-3187F8.14	12	2	GPBP1L1	2702	chr1:46152084:-	CTD-3187F8.14	24898	chr19:51668530:-	ONLY_REF_SPLICE	YES	50	0	0.22	1	0.1075	0.0179	GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-,CTD-3187F8.14->chr19:51656180-51685222:-	NCIH2110_LUNG	0.22	1	0.1254	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	TCEANC2--AP2A1	12	1	TCEANC2	3080	chr1:54534570:+	AP2A1	15435	chr19:50285014:+	ONLY_REF_SPLICE	YES	9	79	0.59	0.14	0.1075	0.009	{Klijn_CCL:Lung=1},TCEANC2->chr1:54519260-54578192:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing_2,AP2A1->adaptor_related_protein_complex_2_alpha_1_subunit,chr19:50270225-50310370:+	NCIH2110_LUNG	0.14	0.59	0.1165	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	12	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1075	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	1	1	0.1075	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-TA--MT-TC	12	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1075	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2110_LUNG	1	1	0.1075	FALSE	462	80	0	856	0	FALSE	ACH-000929
NCIH2110_LUNG	MUC5B--MT-ATP6	12	0	MUC5B	37133	chr11:1282732:+	MT-ATP6	41208	chrM:8927:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1075	0	MUC5B->chr11:1244296-1283406:+,mucin_5B,_oligomeric_mucus/gel-forming,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	1	1	0.1075	FALSE	2	0	0	6	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	3	35	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0269	0.3136	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.97	1	0.3405	FALSE	344	821	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND5--MT-ATP8	8	15	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5	0	0.82	1	0.0717	0.1344	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2110_LUNG	0.82	1	0.2061	FALSE	43	37	8	105	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	6	21	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	1	0.9	0.96	0.0538	0.1881	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.9	0.96	0.2419	FALSE	344	821	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	4	28	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	16	0	0.67	1	0.0358	0.2509	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.67	1	0.2867	FALSE	344	826	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND5--MT-ATP8	10	4	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3746	47	0	0.23	0.0896	0.0358	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2110_LUNG	0	0.23	0.1254	FALSE	43	37	8	105	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	4	27	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	13	0	0.7	1	0.0358	0.2419	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.7	1	0.2777	FALSE	344	826	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	HSP90AB1--MT-RNR2	10	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1570	0	0.01	1	0.0896	0.009	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2110_LUNG	0.01	1	0.0986	FALSE	13	9	0	364	0	FALSE	ACH-000929
NCIH2110_LUNG	SAE1--RPL13A	10	1	SAE1	3564	chr19:47634115:+	RPL13A	23025	chr19:49994682:+	ONLY_REF_SPLICE	YES	0	2114	1	0.01	0.0896	0.009	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	NCIH2110_LUNG	0.01	1	0.0986	FALSE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	3	27	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0269	0.2419	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.97	1	0.2688	FALSE	344	821	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	RP5-857K21.7--MT-CO1	9	3	RP5-857K21.7	1249	chr1:568385:+	MT-CO1	5325	chrM:6546:+	INCL_NON_REF_SPLICE	YES	70	18742	0.15	0	0.0806	0.0269	RP5-857K21.7->chr1:568137-568818:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2110_LUNG	0	0.15	0.1075	FALSE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	AC015987.2--MT-ND1	9	2	AC015987.2	2658	chr7:135613199:+	MT-ND1	5710	chrM:3343:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0806	0.0179	AC015987.2->chr7:135611542-135613214:+,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH2110_LUNG	1	1	0.0985	FALSE	0	0	0	3	0	FALSE	ACH-000929
NCIH2110_LUNG	MEGF8--RPS11	9	1	MEGF8	1822	chr19:42830582:+	RPS11	36541	chr19:50000777:+	ONLY_REF_SPLICE	YES	6	2859	0.62	0	0.0806	0.009	MEGF8->chr19:42829761-42882921:+,multiple_EGF_like_domains_8,RPS11->chr19:49999622-50002946:+,ribosomal_protein_S11	NCIH2110_LUNG	0	0.62	0.0896	FALSE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	9	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	8	0	0.56	1	0.0806	0.009	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	0.56	1	0.0896	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	EIF1--RPS28	9	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0806	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH2110_LUNG	1	1	0.0806	TRUE	0	0	0	81	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND6--MT-TE	7	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.83	1	0.0627	0.0717	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2110_LUNG	0.83	1	0.1344	FALSE	499	1288	110	792	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	4	19	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0.1702	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	1	1	0.206	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	3	23	MT-CO3	1126	chrM:9332:+	MT-ATP6	5405	chrM:9147:+	INCL_NON_REF_SPLICE	YES	6	0	0.81	1	0.0269	0.2061	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	0.81	1	0.233	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	6	11	MT-ND4	1049	chrM:10808:+	MT-ND4L	5620	chrM:10711:+	INCL_NON_REF_SPLICE	YES	3	0	0.85	1	0.0538	0.0986	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.85	1	0.1524	FALSE	344	821	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND6--MT-TE	8	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0717	0.0269	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2110_LUNG	1	1	0.0986	FALSE	499	1288	110	792	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	6	10	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	17	0	0.48	1	0.0538	0.0896	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.48	1	0.1434	FALSE	344	826	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	HSP90AB1--MT-RNR2	8	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1573	0	0.01	1	0.0717	0.009	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2110_LUNG	0.01	1	0.0807	FALSE	13	9	0	364	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND6--MT-TE	5	13	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	0.1165	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2110_LUNG	1	1	0.1613	FALSE	499	1288	110	792	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND1--MT-RNR2	7	4	MT-ND1	1207	chrM:3513:+	MT-RNR2	5683	chrM:2397:+	INCL_NON_REF_SPLICE	NO	14	12131	0.44	0	0.0627	0.0358	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2110_LUNG	0	0.44	0.0985	FALSE	120	26	5	87	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND5--MT-ATP8	6	8	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	3581	0	0	1	0.0538	0.0717	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2110_LUNG	0	1	0.1255	FALSE	43	37	8	105	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND5--MT-CO3	6	8	MT-ND5	2730	chrM:14066:+	MT-CO3	6178	chrM:9572:+	INCL_NON_REF_SPLICE	YES	5	15142	0.74	0	0.0538	0.0717	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH2110_LUNG	0	0.74	0.1255	FALSE	0	15	2	17	0	FALSE	ACH-000929
NCIH2110_LUNG	VANGL1--TCEANC2	8	0	VANGL1	5703	chr1:116206889:+	TCEANC2	24685	chr1:54554270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0717	0	VANGL1->VANGL_planar_cell_polarity_protein_1,chr1:116184574-116240845:+,TCEANC2->chr1:54519260-54578192:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing_2	NCIH2110_LUNG	1	1	0.0717	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RP11-59N23.1--CMAS	7	3	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	10	238	0.5	0.04	0.0627	0.0269	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH2110_LUNG	0.04	0.5	0.0896	TRUE	21	102	17	28	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	7	2	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	16	0	0.36	1	0.0627	0.0179	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	0.36	1	0.0806	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	4	13	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0.1165	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	1	1	0.1523	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	4	13	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	14	0	0.55	1	0.0358	0.1165	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.55	1	0.1523	FALSE	344	826	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	4	13	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	28	0	0.38	1	0.0358	0.1165	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.38	1	0.1523	FALSE	344	827	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND5--MT-ATP8	5	9	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9	47	0.61	0.23	0.0448	0.0806	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2110_LUNG	0.23	0.61	0.1254	FALSE	43	37	8	105	0	FALSE	ACH-000929
NCIH2110_LUNG	YBX3--MT-CO3	7	1	YBX3	1219	chr12:10875693:-	MT-CO3	20797	chrM:9412:+	INCL_NON_REF_SPLICE	YES	2	12579	0.8	0	0.0627	0.009	YBX3->Y-box_binding_protein_3,chr12:10851683-10875911:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH2110_LUNG	0	0.8	0.0717	FALSE	25	0	0	6	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND5--MT-CO3	3	16	MT-ND5	2797	chrM:14133:+	MT-CO3	5963	chrM:9357:+	INCL_NON_REF_SPLICE	YES	0	8234	1	0	0.0269	0.1433	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH2110_LUNG	0	1	0.1702	FALSE	0	15	2	17	0	FALSE	ACH-000929
NCIH2110_LUNG	AC015987.2--MT-ND1	5	7	AC015987.2	2536	chr7:135613077:+	MT-ND1	5676	chrM:3309:+	INCL_NON_REF_SPLICE	YES	123	0	0.09	1	0.0448	0.0627	AC015987.2->chr7:135611542-135613214:+,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH2110_LUNG	0.09	1	0.1075	FALSE	0	0	0	3	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	3	15	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	8	0	0.69	1	0.0269	0.1344	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	0.69	1	0.1613	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND5--MT-ATP8	3	15	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0.1344	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2110_LUNG	1	1	0.1613	FALSE	43	37	8	105	0	FALSE	ACH-000929
NCIH2110_LUNG	RP5-857K21.7--MT-CO1	6	3	RP5-857K21.7	1293	chr1:568429:+	MT-CO1	5516	chrM:6737:+	INCL_NON_REF_SPLICE	YES	88	20343	0.09	0	0.0538	0.0269	RP5-857K21.7->chr1:568137-568818:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2110_LUNG	0	0.09	0.0807	FALSE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	4	10	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0.0896	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	1	1	0.1254	FALSE	344	821	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND6--MT-TE	3	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0.1254	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2110_LUNG	1	1	0.1523	FALSE	499	1288	110	792	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND6--MT-TE	3	13	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.84	1	0.0269	0.1165	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2110_LUNG	0.84	1	0.1434	FALSE	499	1288	110	792	0	FALSE	ACH-000929
NCIH2110_LUNG	ARHGEF16--RP11-470E16.1	6	0	ARHGEF16	5326	chr1:3383901:+	RP11-470E16.1	22524	chr1:59599002:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0538	0	ARHGEF16->Rho_guanine_nucleotide_exchange_factor_16,chr1:3370990-3397677:+,RP11-470E16.1->chr1:59597608-59664293:-	NCIH2110_LUNG	1	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	5	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	8	0	0.53	1	0.0448	0.0358	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	0.53	1	0.0806	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND1--MT-RNR2	5	4	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	NO	37	138	0.2	0.06	0.0448	0.0358	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2110_LUNG	0.06	0.2	0.0806	FALSE	92	22	4	61	0	FALSE	ACH-000929
NCIH2110_LUNG	RP11-57H12.6--RP11-776H12.1	5	4	RP11-57H12.6	6653	chr1:95639445:+	RP11-776H12.1	15423	chr1:61065942:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	0.0358	RP11-57H12.6->chr1:95583479-95712781:+,RP11-776H12.1->chr1:61005921-61106163:-	NCIH2110_LUNG	1	1	0.0806	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	SLC1A5--MT-ND4L	6	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	1	1	0.0538	FALSE	0	0	0	189	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND5--MT-ATP8	4	7	MT-ND5	2303	chrM:13639:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1791	47	0.01	0.19	0.0358	0.0627	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2110_LUNG	0.01	0.19	0.0985	FALSE	43	37	8	105	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND5--MT-CO3	5	3	MT-ND5	2591	chrM:13927:+	MT-CO3	6171	chrM:9565:+	INCL_NON_REF_SPLICE	YES	1602	15446	0	0	0.0448	0.0269	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH2110_LUNG	0	0	0.0717	FALSE	0	15	2	18	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND5--MT-CO3	3	11	MT-ND5	2647	chrM:13983:+	MT-CO3	5951	chrM:9345:+	INCL_NON_REF_SPLICE	YES	1127	6673	0.01	0	0.0269	0.0986	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH2110_LUNG	0	0.01	0.1255	FALSE	0	15	2	18	0	FALSE	ACH-000929
NCIH2110_LUNG	SERINC2--CROCCP3	5	3	SERINC2	5568	chr1:31888754:+	CROCCP3	22046	chr1:16813156:-	ONLY_REF_SPLICE	YES	4	1	0.67	0.89	0.0448	0.0269	SERINC2->chr1:31882412-31907525:+,serine_incorporator_2,CROCCP3->chr1:16793931-16825752:-,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_3	NCIH2110_LUNG	0.67	0.89	0.0717	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RP11-96H19.1--RP11-446N19.1	4	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0358	0.0538	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2110_LUNG	0.77	1	0.0896	FALSE	407	2205	196	549	0	FALSE	ACH-000929
NCIH2110_LUNG	BCAR3--STRN4	5	1	BCAR3	8673	chr1:94140170:-	STRN4	36978	chr19:47236493:-	ONLY_REF_SPLICE	YES	37	164	0.14	0.04	0.0448	0.009	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,STRN4->chr19:47222764-47250251:-,striatin_4	NCIH2110_LUNG	0.04	0.14	0.0538	TRUE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	5	1	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	16	0	0.27	1	0.0448	0.009	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	0.27	1	0.0538	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	4	5	MT-ND4	1008	chrM:10767:+	MT-ND4L	5567	chrM:10658:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0.0448	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	1	1	0.0806	FALSE	344	821	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	4	5	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	16	0	0.36	1	0.0358	0.0448	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.36	1	0.0806	FALSE	344	826	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND1--MT-RNR2	4	4	MT-ND1	1235	chrM:3541:+	MT-RNR2	5565	chrM:2279:+	INCL_NON_REF_SPLICE	YES	16	10058	0.33	0	0.0358	0.0358	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2110_LUNG	0	0.33	0.0716	FALSE	120	26	5	87	0	FALSE	ACH-000929
NCIH2110_LUNG	ZNF331--PEG3	1	16	ZNF331	7495	chr19:54042536:+	PEG3	24637	chr19:57337831:-	ONLY_REF_SPLICE	YES	27	8	0.39	0.68	0.009	0.1433	HGNC_GENEFAM,PROTCLUST,ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331,PEG3->Oncogene{Bushman},chr19:57321445-57352096:-,paternally_expressed_3	NCIH2110_LUNG	0.39	0.68	0.1523	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	MT-ND5--MT-CO3	4	3	MT-ND5	2607	chrM:13943:+	MT-CO3	6185	chrM:9579:+	INCL_NON_REF_SPLICE	YES	1453	15009	0	0	0.0358	0.0269	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH2110_LUNG	0	0	0.0627	FALSE	0	15	2	18	0	FALSE	ACH-000929
NCIH2110_LUNG	RP5-857K21.7--MT-CO1	3	7	RP5-857K21.7	1396	chr1:568532:+	MT-CO1	4821	chrM:6042:+	INCL_NON_REF_SPLICE	YES	19	7643	0.34	0	0.0269	0.0627	RP5-857K21.7->chr1:568137-568818:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2110_LUNG	0	0.34	0.0896	FALSE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	RP5-857K21.7--MT-CO1	3	7	RP5-857K21.7	1549	chr1:568685:+	MT-CO1	5337	chrM:6558:+	INCL_NON_REF_SPLICE	NO	1	18943	0.91	0	0.0269	0.0627	RP5-857K21.7->chr1:568137-568818:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2110_LUNG	0	0.91	0.0896	FALSE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	RP5-857K21.7--MT-CO1	4	3	RP5-857K21.7	1227	chr1:568363:+	MT-CO1	5224	chrM:6445:+	INCL_NON_REF_SPLICE	NO	54	17106	0.11	0	0.0358	0.0269	RP5-857K21.7->chr1:568137-568818:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2110_LUNG	0	0.11	0.0627	FALSE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	AC015987.2--MT-ND1	4	2	AC015987.2	2663	chr7:135613204:+	MT-ND1	5715	chrM:3348:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0.0179	AC015987.2->chr7:135611542-135613214:+,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH2110_LUNG	1	1	0.0537	FALSE	0	0	0	3	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	4	2	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	8	0	0.43	1	0.0358	0.0179	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	0.43	1	0.0537	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND1--MT-RNR2	3	6	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	18	0	0.33	1	0.0269	0.0538	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2110_LUNG	0.33	1	0.0807	FALSE	114	26	4	85	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND1--MT-RNR2	3	6	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	17	0	0.35	1	0.0269	0.0538	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2110_LUNG	0.35	1	0.0807	FALSE	114	26	4	85	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	3	5	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	33	0	0.2	1	0.0269	0.0448	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	0.2	1	0.0717	FALSE	344	827	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	PLAUR--RP11-115A15.1	3	5	PLAUR	3222	chr19:44171733:-	RP11-115A15.1	16448	chr1:81050048:-	ONLY_REF_SPLICE	YES	303	0	0.03	1	0.0269	0.0448	PLAUR->Oncogene{Bushman},chr19:44150247-44174699:-,plasminogen_activator,_urokinase_receptor,RP11-115A15.1->chr1:81000663-81050048:-	NCIH2110_LUNG	0.03	1	0.0717	TRUE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	RAD54L--TTC34	4	1	RAD54L	1721	chr1:46714080:+	TTC34	23464	chr1:2577002:-	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0358	0.009	RAD54L->RAD54-like_(S._cerevisiae),chr1:46713360-46744145:+,TTC34->chr1:2567415-2718286:-,tetratricopeptide_repeat_domain_34	NCIH2110_LUNG	0.26	1	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RP5-857K21.7--MT-CO1	3	5	RP5-857K21.7	1489	chr1:568625:+	MT-CO1	5619	chrM:6840:+	INCL_NON_REF_SPLICE	YES	3	14215	0.73	0	0.0269	0.0448	RP5-857K21.7->chr1:568137-568818:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2110_LUNG	0	0.73	0.0717	FALSE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	ZNF331--PEG3	1	13	ZNF331	7495	chr19:54042536:+	PEG3	26292	chr19:57335795:-	ONLY_REF_SPLICE	NO	27	22	0.34	0.39	0.009	0.1165	HGNC_GENEFAM,PROTCLUST,ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331,PEG3->Oncogene{Bushman},chr19:57321445-57352096:-,paternally_expressed_3	NCIH2110_LUNG	0.34	0.39	0.1255	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	APP--MT-ND2	4	0	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH2110_LUNG	1	1	0.0358	FALSE	0	1	0	51	0	FALSE	ACH-000929
NCIH2110_LUNG	BCAR3--STRN4	4	0	BCAR3	8673	chr1:94140170:-	STRN4	39091	chr19:47234130:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,STRN4->chr19:47222764-47250251:-,striatin_4	NCIH2110_LUNG	1	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	DDAH1--NFIA	4	0	DDAH1	10736	chr1:85930426:-	NFIA	32136	chr1:61743192:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,NFIA->chr1:61330931-61928465:+,nuclear_factor_I_A	NCIH2110_LUNG	1	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	MT-ND1--MT-RNR2	3	4	MT-ND1	1201	chrM:3507:+	MT-RNR2	5564	chrM:2278:+	INCL_NON_REF_SPLICE	YES	14	9973	0.33	0	0.0269	0.0358	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2110_LUNG	0	0.33	0.0627	FALSE	120	26	5	87	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND1--MT-RNR2	3	4	MT-ND1	1236	chrM:3542:+	MT-RNR2	5545	chrM:2259:+	INCL_NON_REF_SPLICE	YES	16	9536	0.3	0	0.0269	0.0358	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2110_LUNG	0	0.3	0.0627	FALSE	120	26	5	87	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND1--MT-RNR2	3	4	MT-ND1	1272	chrM:3578:+	MT-RNR2	5546	chrM:2260:+	INCL_NON_REF_SPLICE	YES	18	9529	0.28	0	0.0269	0.0358	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2110_LUNG	0	0.28	0.0627	FALSE	120	26	5	87	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	1	1	0.0358	FALSE	344	821	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0.0358	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2110_LUNG	1	1	0.0627	FALSE	462	80	0	856	0	FALSE	ACH-000929
NCIH2110_LUNG	NRIP1--AF127936.7	4	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2110_LUNG	1	1	0.0358	FALSE	125	705	46	456	0	FALSE	ACH-000929
NCIH2110_LUNG	RP11-57H12.6--RP11-776H12.1	3	4	RP11-57H12.6	6653	chr1:95639445:+	RP11-776H12.1	15443	chr1:61065922:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0.0358	RP11-57H12.6->chr1:95583479-95712781:+,RP11-776H12.1->chr1:61005921-61106163:-	NCIH2110_LUNG	1	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	MT-ND4--MT-ND4L	3	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0.0269	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	1	1	0.0538	FALSE	344	821	44	306	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-TA--MT-TC	3	3	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0.0269	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2110_LUNG	1	1	0.0538	FALSE	462	80	0	856	0	FALSE	ACH-000929
NCIH2110_LUNG	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.75	0.0269	0.0269	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2110_LUNG	0.75	1	0.0538	FALSE	467	2173	244	435	0	FALSE	ACH-000929
NCIH2110_LUNG	FASN--MT-ND1	3	2	FASN	18663	chr17:80037330:-	MT-ND1	22782	chrM:3309:+	INCL_NON_REF_SPLICE	YES	378	0	0.01	1	0.0269	0.0179	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH2110_LUNG	0.01	1	0.0448	FALSE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	HNRNPUL1--MT-CO1	3	1	HNRNPUL1	19583	chr19:41810005:+	MT-CO1	26615	chrM:6821:+	INCL_NON_REF_SPLICE	YES	267	19601	0.01	0	0.0269	0.009	HNRNPUL1->chr19:41768401-41813503:+,heterogeneous_nuclear_ribonucleoprotein_U_like_1,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2110_LUNG	0	0.01	0.0359	FALSE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND5--MT-CO3	3	1	MT-ND5	1588	chrM:12924:+	MT-CO3	5815	chrM:9209:+	INCL_NON_REF_SPLICE	YES	2320	0	0	1	0.0269	0.009	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH2110_LUNG	0	1	0.0359	FALSE	0	7	0	11	0	FALSE	ACH-000929
NCIH2110_LUNG	APP--MT-ND2	3	0	APP	11619	chr21:27394230:-	MT-ND2	32998	chrM:5292:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH2110_LUNG	1	1	0.0269	FALSE	0	1	0	51	0	FALSE	ACH-000929
NCIH2110_LUNG	EIF1--RPS28	3	0	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH2110_LUNG	1	1	0.0269	TRUE	0	0	0	81	0	FALSE	ACH-000929
NCIH2110_LUNG	EIF1--RPS28	3	0	EIF1	1089	chr17:39845225:+	RPS28	8128	chr19:8386385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH2110_LUNG	1	1	0.0269	TRUE	0	0	0	81	0	FALSE	ACH-000929
NCIH2110_LUNG	GPBP1L1--CTD-3187F8.14	3	0	GPBP1L1	1131	chr1:46153655:-	CTD-3187F8.14	24898	chr19:51668530:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	GPBP1L1->GC-rich_promoter_binding_protein_1_like_1,chr1:46092976-46153785:-,CTD-3187F8.14->chr19:51656180-51685222:-	NCIH2110_LUNG	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1032	chrM:9238:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2110_LUNG	1	1	0.0269	FALSE	189	492	56	216	0	FALSE	ACH-000929
NCIH2110_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2110_LUNG	1	1	0.0269	FALSE	499	1288	110	792	0	FALSE	ACH-000929
NCIH2110_LUNG	SERINC2--CROCCP3	3	0	SERINC2	3060	chr1:31886151:+	CROCCP3	22046	chr1:16813156:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	SERINC2->chr1:31882412-31907525:+,serine_incorporator_2,CROCCP3->chr1:16793931-16825752:-,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_3	NCIH2110_LUNG	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	VAT1--MT-ND4L	3	0	VAT1	7912	chr17:41167714:-	MT-ND4L	12006	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	VAT1->chr17:41166622-41177140:-,vesicle_amine_transport_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2110_LUNG	1	1	0.0269	FALSE	0	0	0	5	0	FALSE	ACH-000929
NCIH2110_LUNG	FGGY--SLC1A7	2	3	FGGY	6649	chr1:59787422:+	SLC1A7	38368	chr1:53600101:-	ONLY_REF_SPLICE	YES	6	0	0.45	1	0.0179	0.0269	{Klijn_CCL:Lung=1},FGGY->FGGY_carbohydrate_kinase_domain_containing,chr1:59762310-60233347:+,SLC1A7->chr1:53552855-53608289:-,solute_carrier_family_1_member_7	NCIH2110_LUNG	0.45	1	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.009	0.0538	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2110_LUNG	0.7	1	0.0628	FALSE	275	511	55	178	0	FALSE	ACH-000929
NCIH2110_LUNG	RP4-594I10.3--MECR	2	2	RP4-594I10.3	2370	chr1:24878379:-	MECR	19879	chr1:29522770:-	ONLY_REF_SPLICE	YES	0	41	1	0.09	0.0179	0.0179	RP4-594I10.3->chr1:24865292-24882515:-,MECR->chr1:29519385-29557454:-,mitochondrial_trans-2-enoyl-CoA_reductase	NCIH2110_LUNG	0.09	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	HNRNPR--TXLNA	1	5	HNRNPR	5264	chr1:23660011:-	TXLNA	27221	chr1:32655656:+	ONLY_REF_SPLICE	YES	200	70	0.03	0.08	0.009	0.0448	{Klijn_CCL:Lung=1},HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,TXLNA->chr1:32645287-32663886:+,taxilin_alpha	NCIH2110_LUNG	0.03	0.08	0.0538	TRUE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	29	0	0.09	1	0.0179	0.009	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2110_LUNG	0.09	1	0.0269	FALSE	164	806	69	479	0	FALSE	ACH-000929
NCIH2110_LUNG	NRP1--PARD3	2	1	NRP1	8745	chr10:33542956:-	PARD3	38289	chr10:34806087:-	ONLY_REF_SPLICE	YES	93	119	0.03	0.02	0.0179	0.009	GTEx_FI:{Nerve=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Kidney=[count:1=pct:7.1],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Kidney_-_Cortex=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Lung=1},NRP1->chr10:33466420-33625190:-,neuropilin_1,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	NCIH2110_LUNG	0.02	0.03	0.0269	TRUE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	TBCA--DEDD2	1	5	TBCA	2304	chr5:77072029:-	DEDD2	18315	chr19:42713992:-	ONLY_REF_SPLICE	YES	193	54	0.03	0.1	0.009	0.0448	TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A,DEDD2->chr19:42702750-42724292:-,death_effector_domain_containing_2	NCIH2110_LUNG	0.03	0.1	0.0538	TRUE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	ACTN4--CTD-2126E3.3	2	0	ACTN4	1259	chr19:39138547:+	CTD-2126E3.3	28041	chr19:50548044:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,CTD-2126E3.3->chr19:50546453-50554319:-	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	ARHGAP26--NR3C1	2	0	ARHGAP26	30126	chr5:142526946:+	NR3C1	59759	chr5:142693733:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=4;pct=0.05%;dist=Lung=2,Adipose_-_Subcutaneous=1,Whole_Blood=1},LOCAL_INVERSION:+:-:[48920],ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+,NR3C1->chr5:142657496-142815077:-,nuclear_receptor_subfamily_3_group_C_member_1	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	ARHGAP35--LPPR5	2	0	ARHGAP35	5826	chr19:47440665:+	LPPR5	22776	chr1:99422297:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,LPPR5->chr1:99355806-99470588:-	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	BCAR3--STRN4	2	0	BCAR3	6854	chr1:94147154:-	STRN4	32862	chr19:47242145:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,STRN4->chr19:47222764-47250251:-,striatin_4	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	CHD8--TRAV21	2	0	CHD8	1095	chr14:21924191:-	TRAV21	35936	chr14:22521026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,TRAV21->T_cell_receptor_alpha_variable_21,chr14:22520773-22521315:+	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	CHD8--TRAV21	2	0	CHD8	3283	chr14:21905353:-	TRAV21	35936	chr14:22521026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,TRAV21->T_cell_receptor_alpha_variable_21,chr14:22520773-22521315:+	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	LINC01059--U2AF1	2	0	LINC01059	1432	chr11:123325537:+	U2AF1	17887	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	LINC01059->chr11:123325106-123331118:+,long_intergenic_non-protein_coding_RNA_1059,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	NDC1--FOXM1	2	0	NDC1	12822	chr1:54266366:-	FOXM1	35463	chr12:2968829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	NDC1->NDC1_transmembrane_nucleoporin,chr1:54231133-54304533:-,FOXM1->Oncogene{Bushman},chr12:2966847-2986206:-,forkhead_box_M1	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RCC1--LRBA	2	0	RCC1	2175	chr1:28834672:+	LRBA	73292	chr4:151336742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NCIH2110_LUNG	1	1	0.0179	TRUE	53	396	64	110	0	FALSE	ACH-000929
NCIH2110_LUNG	TSPAN1--TMEM59	2	0	TSPAN1	3414	chr1:46646836:+	TMEM59	12756	chr1:54513045:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	{Klijn_CCL:Lung=1},TSPAN1->Oncogene{Bushman},chr1:46640745-46651630:+,tetraspanin_1,TMEM59->chr1:54497347-54519177:-,transmembrane_protein_59	NCIH2110_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	RP11-57H12.6--RP11-776H12.1	1	2	RP11-57H12.6	6653	chr1:95639445:+	RP11-776H12.1	16567	chr1:61062045:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.009	0.0179	RP11-57H12.6->chr1:95583479-95712781:+,RP11-776H12.1->chr1:61005921-61106163:-	NCIH2110_LUNG	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	STK11--HDAC4	1	2	STK11	3716	chr19:1207202:+	HDAC4	32226	chr2:240078469:-	ONLY_REF_SPLICE	NO	20	13	0.13	0.19	0.009	0.0179	STK11->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr19:1189406-1228428:+,serine/threonine_kinase_11,HDAC4->Oncogene{Bushman},chr2:239969864-240323348:-,histone_deacetylase_4	NCIH2110_LUNG	0.13	0.19	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	ARHGAP29--COL24A1	1	1	ARHGAP29	19169	chr1:94654393:-	COL24A1	44500	chr1:86581061:-	ONLY_REF_SPLICE	YES	53	11	0.04	0.15	0.009	0.009	{Klijn_CCL:Lung=1},ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-,COL24A1->chr1:86194916-86622626:-,collagen_type_XXIV_alpha_1	NCIH2110_LUNG	0.04	0.15	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	CHD8--TRAV21	1	1	CHD8	4624	chr14:21899970:-	TRAV21	35936	chr14:22521026:+	ONLY_REF_SPLICE	YES	20	0	0.09	1	0.009	0.009	CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,TRAV21->T_cell_receptor_alpha_variable_21,chr14:22520773-22521315:+	NCIH2110_LUNG	0.09	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	KIF26B--SMYD3	1	1	KIF26B	11092	chr1:245704252:+	SMYD3	55692	chr1:246093239:-	ONLY_REF_SPLICE	YES	2	46	0.5	0.04	0.009	0.009	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	NCIH2110_LUNG	0.04	0.5	0.018	TRUE	0	2	0	1	0	TRUE	ACH-000929
NCIH2110_LUNG	KIF26B--SMYD3	1	1	KIF26B	2699	chr1:245319985:+	SMYD3	55692	chr1:246093239:-	ONLY_REF_SPLICE	YES	0	46	1	0.04	0.009	0.009	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	NCIH2110_LUNG	0.04	1	0.018	TRUE	0	18	0	6	12	TRUE	ACH-000929
NCIH2110_LUNG	NRP1--PARD3	1	1	NRP1	13514	chr10:33502314:-	PARD3	50821	chr10:34649187:-	ONLY_REF_SPLICE	YES	123	182	0.02	0.01	0.009	0.009	GTEx_FI:{Nerve=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Kidney=[count:1=pct:7.1],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Kidney_-_Cortex=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Lung=1},NRP1->chr10:33466420-33625190:-,neuropilin_1,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	NCIH2110_LUNG	0.01	0.02	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000929
NCIH2110_LUNG	WHSC1L1--CHCHD7	1	1	WHSC1L1	1474	chr8:38239317:-	CHCHD7	44210	chr8:57127157:+	ONLY_REF_SPLICE	YES	18	76	0.1	0.03	0.009	0.009	WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-,CHCHD7->Oncogene{Bushman},chr8:57124245-57131357:+,coiled-coil-helix-coiled-coil-helix_domain_containing_7	NCIH2110_LUNG	0.03	0.1	0.018	TRUE	0	0	0	1	0	FALSE	ACH-000929
NCIH660_PROSTATE	EEF2--SLC25A42	417	166	EEF2	7141	chr19:3979327:-	SLC25A42	19726	chr19:19218703:+	ONLY_REF_SPLICE	YES	1097	6	0.35	0.99	4.6037	1.8327	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,SLC25A42->chr19:19174808-19223697:+,solute_carrier_family_25_member_42	NCIH660_PROSTATE	0.35	0.99	6.4364	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	ZNF146--AC020907.1	175	52	ZNF146	2669	chr19:36709097:+	AC020907.1	11373	chr19:35597099:+	INCL_NON_REF_SPLICE	YES	256	4	0.47	0.98	1.932	0.5741	ZNF146->Oncogene{Bushman},chr19:36705504-36729676:+,zinc_finger_protein_146,AC020907.1->chr19:35596873-35598141:+	NCIH660_PROSTATE	0.47	0.98	2.5061	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	ANAPC13--VIT	129	91	ANAPC13	3845	chr3:134201648:-	VIT	11274	chr2:36956569:+	ONLY_REF_SPLICE	YES	143	0	0.61	1	1.4242	1.0047	ANAPC13->anaphase_promoting_complex_subunit_13,chr3:134196548-134205558:-,VIT->chr2:36923833-37041935:+,vitrin	NCIH660_PROSTATE	0.61	1	2.4289	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	FOXP1--PDCD6IP	105	50	FOXP1	19737	chr3:71247353:-	PDCD6IP	51546	chr3:33853564:+	ONLY_REF_SPLICE	YES	13	129	0.92	0.55	1.1592	0.552	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,PDCD6IP->chr3:33839844-33911194:+,programmed_cell_death_6_interacting_protein	NCIH660_PROSTATE	0.55	0.92	1.7112	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	FOXP1--RYBP	98	39	FOXP1	29035	chr3:71090479:-	RYBP	49773	chr3:72428578:-	ONLY_REF_SPLICE	YES	9	18	0.94	0.88	1.0819	0.4306	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,RYBP->RING1_and_YY1_binding_protein,chr3:72420976-72496069:-	NCIH660_PROSTATE	0.88	0.94	1.5125	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	RYBP--FOXP1	71	26	RYBP	1423	chr3:72495647:-	FOXP1	34424	chr3:71161788:-	ONLY_REF_SPLICE	YES	17	14	0.85	0.87	0.7839	0.287	RYBP->RING1_and_YY1_binding_protein,chr3:72420976-72496069:-,FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1	NCIH660_PROSTATE	0.85	0.87	1.0709	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	TIMM23B--LINC00843	52	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5741	0.3312	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH660_PROSTATE	1	1	0.9053	TRUE	508	994	45	981	0	FALSE	ACH-000177
NCIH660_PROSTATE	OR51S1--TP53I11	50	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.552	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH660_PROSTATE	1	1	0.552	TRUE	402	216	10	229	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-TA--MT-TC	42	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4637	0.0221	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH660_PROSTATE	1	1	0.4858	FALSE	462	80	0	856	0	FALSE	ACH-000177
NCIH660_PROSTATE	CTNND2--GNPDA1	34	12	CTNND2	15486	chr5:11236803:-	GNPDA1	37198	chr5:141391606:-	ONLY_REF_SPLICE	YES	35	9	0.57	0.84	0.3754	0.1325	CTNND2->Oncogene{Bushman},catenin_delta_2,chr5:10971952-11904155:-,GNPDA1->chr5:141371314-141392606:-,glucosamine-6-phosphate_deaminase_1	NCIH660_PROSTATE	0.57	0.84	0.5079	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ND4L	10	106	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	7	0	0.94	1	0.1104	1.1703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH660_PROSTATE	0.94	1	1.2807	FALSE	344	826	44	306	0	FALSE	ACH-000177
NCIH660_PROSTATE	NPM1P24--SET	33	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3643	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH660_PROSTATE	1	1	0.3643	TRUE	0	0	0	434	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ND4L	3	106	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0331	1.1703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH660_PROSTATE	0.98	1	1.2034	FALSE	344	826	44	306	0	FALSE	ACH-000177
NCIH660_PROSTATE	TIMM23--RP11-464F9.1	29	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	185	23	0.14	0.57	0.3202	0.0221	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH660_PROSTATE	0.14	0.57	0.3423	TRUE	519	3926	326	965	0	FALSE	ACH-000177
NCIH660_PROSTATE	FOXP1--PDCD6IP	15	55	FOXP1	19737	chr3:71247353:-	PDCD6IP	50571	chr3:33852589:+	ONLY_REF_SPLICE	YES	13	136	0.84	0.34	0.1656	0.6072	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,PDCD6IP->chr3:33839844-33911194:+,programmed_cell_death_6_interacting_protein	NCIH660_PROSTATE	0.34	0.84	0.7728	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ND4L	3	101	MT-ND4	1100	chrM:10859:+	MT-ND4L	5541	chrM:10632:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0331	1.1151	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH660_PROSTATE	0.99	1	1.1482	FALSE	344	826	44	306	0	FALSE	ACH-000177
NCIH660_PROSTATE	ZNF654--HMGB2	26	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.287	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH660_PROSTATE	1	1	0.287	TRUE	0	0	0	518	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ND4L	5	83	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0552	0.9163	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH660_PROSTATE	0.98	1	0.9715	FALSE	344	826	44	306	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND5--MT-ATP8	18	28	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	7	0	0.87	1	0.1987	0.3091	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0.87	1	0.5078	FALSE	43	37	8	105	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND5--MT-ATP8	21	15	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3557	3	0.01	0.92	0.2318	0.1656	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0.01	0.92	0.3974	FALSE	43	37	8	105	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND6--MT-TE	22	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.2429	0.1104	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH660_PROSTATE	0.89	1	0.3533	FALSE	499	1288	110	792	0	FALSE	ACH-000177
NCIH660_PROSTATE	USP15--C12orf56	20	18	USP15	4846	chr12:62696701:+	C12orf56	40343	chr12:64724812:-	ONLY_REF_SPLICE	YES	60	8	0.39	0.83	0.2208	0.1987	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,C12orf56->chr12:64660217-64784972:-,chromosome_12_open_reading_frame_56	NCIH660_PROSTATE	0.39	0.83	0.4195	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	ZNF420--TMLHE	22	10	ZNF420	5639	chr19:37582023:+	TMLHE	18020	chrX:154774938:-	ONLY_REF_SPLICE	YES	45	0	0.42	1	0.2429	0.1104	ZNF420->chr19:37498759-37621216:+,zinc_finger_protein_420,TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon	NCIH660_PROSTATE	0.42	1	0.3533	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	MT-ND6--MT-TE	23	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2539	0.0442	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH660_PROSTATE	0.96	1	0.2981	FALSE	499	1288	110	792	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ND4L	6	66	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0662	0.7287	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH660_PROSTATE	0.99	1	0.7949	FALSE	344	821	44	306	0	FALSE	ACH-000177
NCIH660_PROSTATE	RP11-444D3.1--SOX5	21	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2318	0.0221	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH660_PROSTATE	1	1	0.2539	TRUE	477	1352	189	275	0	FALSE	ACH-000177
NCIH660_PROSTATE	FOXP1--PDCD6IP	6	51	FOXP1	21397	chr3:71179649:-	PDCD6IP	51546	chr3:33853564:+	ONLY_REF_SPLICE	YES	16	129	0.78	0.31	0.0662	0.563	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,PDCD6IP->chr3:33839844-33911194:+,programmed_cell_death_6_interacting_protein	NCIH660_PROSTATE	0.31	0.78	0.6292	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	ZNF146--AC020907.1	18	3	ZNF146	1595	chr19:36706098:+	AC020907.1	11373	chr19:35597099:+	INCL_NON_REF_SPLICE	YES	19	4	0.53	0.84	0.1987	0.0331	ZNF146->Oncogene{Bushman},chr19:36705504-36729676:+,zinc_finger_protein_146,AC020907.1->chr19:35596873-35598141:+	NCIH660_PROSTATE	0.53	0.84	0.2318	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	MT-ND5--MT-ATP8	15	13	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	7	446	0.8	0.06	0.1656	0.1435	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0.06	0.8	0.3091	FALSE	43	37	8	105	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND6--MT-TE	16	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1766	0.0442	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH660_PROSTATE	0.95	1	0.2208	FALSE	499	1288	110	792	0	FALSE	ACH-000177
NCIH660_PROSTATE	PRSS23--TMEM135	14	6	PRSS23	8412	chr11:86534635:+	TMEM135	28046	chr11:86868383:+	ONLY_REF_SPLICE	YES	10	20	0.67	0.5	0.1546	0.0662	NEIGHBORS[84934],PRSS23->chr11:86502101-86663952:+,protease,_serine_23,TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135	NCIH660_PROSTATE	0.5	0.67	0.2208	FALSE	0	0	0	2	0	FALSE	ACH-000177
NCIH660_PROSTATE	ZNF146--AC020907.1	3	50	ZNF146	2669	chr19:36709097:+	AC020907.1	11378	chr19:35597104:+	INCL_NON_REF_SPLICE	YES	256	4	0.17	0.93	0.0331	0.552	ZNF146->Oncogene{Bushman},chr19:36705504-36729676:+,zinc_finger_protein_146,AC020907.1->chr19:35596873-35598141:+	NCIH660_PROSTATE	0.17	0.93	0.5851	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	MT-ND5--MT-ATP8	7	31	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0773	0.3422	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	1	1	0.4195	FALSE	43	37	8	105	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ATP6--MT-CO2	14	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	27	6	0.37	0.73	0.1546	0.0221	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH660_PROSTATE	0.37	0.73	0.1767	FALSE	59	21	0	114	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-CO1--MT-ND1	12	4	MT-CO1	1585	chrM:6488:+	MT-ND1	5558	chrM:3322:+	INCL_NON_REF_SPLICE	YES	16613	0	0	1	0.1325	0.0442	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH660_PROSTATE	0	1	0.1767	FALSE	39	30	6	19	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ND4L	7	23	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0773	0.2539	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH660_PROSTATE	0.97	1	0.3312	FALSE	344	821	44	306	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND5--MT-ATP8	5	31	MT-ND5	2813	chrM:14149:+	MT-ATP8	5870	chrM:8423:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0.3422	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	1	1	0.3974	FALSE	43	37	8	105	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND5--MT-ATP8	5	31	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0.3422	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	1	1	0.3974	FALSE	43	37	8	105	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND5--MT-ATP8	9	14	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5700	70	0	0.25	0.0994	0.1546	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	0.25	0.254	FALSE	43	37	8	105	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-TA--MT-TC	12	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1325	0.0221	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH660_PROSTATE	1	1	0.1546	FALSE	462	80	0	856	0	FALSE	ACH-000177
NCIH660_PROSTATE	EEF2--SLC25A42	3	37	EEF2	7141	chr19:3979327:-	SLC25A42	20878	chr19:19221378:+	ONLY_REF_SPLICE	YES	1097	70	0.04	0.36	0.0331	0.4085	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,SLC25A42->chr19:19174808-19223697:+,solute_carrier_family_25_member_42	NCIH660_PROSTATE	0.04	0.36	0.4416	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	MT-ATP6--MT-CO1	12	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	6701	19473	0	0	0.1325	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH660_PROSTATE	0	0	0.1435	FALSE	183	104	9	328	0	FALSE	ACH-000177
NCIH660_PROSTATE	TMPRSS2--ERG	11	5	TMPRSS2	5769	chr21:42870046:-	ERG	35606	chr21:39817544:-	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.1214	0.0552	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	NCIH660_PROSTATE	0.94	1	0.1766	TRUE	0	51	1	1	51	TRUE	ACH-000177
NCIH660_PROSTATE	MT-ND3--MT-ATP8	12	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1325	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	1	1	0.1325	FALSE	351	233	23	137	0	FALSE	ACH-000177
NCIH660_PROSTATE	GDAP1--RP11-758M4.1	10	5	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	155	0	0.09	1	0.1104	0.0552	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH660_PROSTATE	0.09	1	0.1656	TRUE	7	28	0	43	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ATP8	11	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	8333	3	0	0.8	0.1214	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	0.8	0.1324	FALSE	230	193	14	283	0	FALSE	ACH-000177
NCIH660_PROSTATE	SLC25A42--EEF2	10	4	SLC25A42	5959	chr19:19217194:+	EEF2	21081	chr19:3978170:-	ONLY_REF_SPLICE	YES	6	1136	0.7	0.01	0.1104	0.0442	SLC25A42->chr19:19174808-19223697:+,solute_carrier_family_25_member_42,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	NCIH660_PROSTATE	0.01	0.7	0.1546	TRUE	0	0	0	1	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-CO1--MT-ND1	9	4	MT-CO1	1653	chrM:6556:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	19630	7050	0	0	0.0994	0.0442	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH660_PROSTATE	0	0	0.1436	FALSE	39	30	6	19	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ATP8	8	7	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9357	70	0	0.18	0.0883	0.0773	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	0.18	0.1656	FALSE	231	217	16	283	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND5--MT-ATP8	3	27	MT-ND5	2851	chrM:14187:+	MT-ATP8	5906	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.0331	0.2981	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0.97	1	0.3312	FALSE	43	37	8	105	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ND4L	6	14	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0662	0.1546	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH660_PROSTATE	0.95	1	0.2208	FALSE	344	821	44	306	0	FALSE	ACH-000177
NCIH660_PROSTATE	USP15--C12orf56	5	18	USP15	7898	chr12:62699839:+	C12orf56	40343	chr12:64724812:-	ONLY_REF_SPLICE	YES	68	8	0.25	0.74	0.0552	0.1987	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,C12orf56->chr12:64660217-64784972:-,chromosome_12_open_reading_frame_56	NCIH660_PROSTATE	0.25	0.74	0.2539	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	FOXP1--PDCD6IP	1	33	FOXP1	19737	chr3:71247353:-	PDCD6IP	52883	chr3:33855051:+	ONLY_REF_SPLICE	YES	13	98	0.72	0.26	0.011	0.3643	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,PDCD6IP->chr3:33839844-33911194:+,programmed_cell_death_6_interacting_protein	NCIH660_PROSTATE	0.26	0.72	0.3753	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ND4L	5	16	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	11	0	0.66	1	0.0552	0.1766	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH660_PROSTATE	0.66	1	0.2318	FALSE	344	826	44	306	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND5--MT-ATP8	4	20	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18	3	0.57	0.89	0.0442	0.2208	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0.57	0.89	0.265	FALSE	43	37	8	105	0	FALSE	ACH-000177
NCIH660_PROSTATE	PRSS23--TMEM135	8	4	PRSS23	8412	chr11:86534635:+	TMEM135	31459	chr11:86947680:+	ONLY_REF_SPLICE	YES	10	20	0.55	0.38	0.0883	0.0442	NEIGHBORS[84934],PRSS23->chr11:86502101-86663952:+,protease,_serine_23,TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135	NCIH660_PROSTATE	0.38	0.55	0.1325	FALSE	0	0	0	2	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ND4L	3	23	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0331	0.2539	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH660_PROSTATE	0.93	1	0.287	FALSE	344	826	44	306	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ATP6--MT-CO2	8	2	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	29	6	0.26	0.62	0.0883	0.0221	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH660_PROSTATE	0.26	0.62	0.1104	FALSE	59	21	0	114	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ATP6--MT-CO1	8	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	6778	18928	0	0	0.0883	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH660_PROSTATE	0	0	0.0993	FALSE	183	104	9	328	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ATP8	7	5	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9910	3	0	0.8	0.0773	0.0552	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	0.8	0.1325	FALSE	231	217	16	283	0	FALSE	ACH-000177
NCIH660_PROSTATE	PPA1--NUDT13	5	12	PPA1	2707	chr10:71990097:-	NUDT13	16473	chr10:74870133:+	INCL_NON_REF_SPLICE	NO	263	0	0.06	1	0.0552	0.1325	PPA1->chr10:71962586-71993667:-,pyrophosphatase_(inorganic)_1,NUDT13->chr10:74870217-74891586:+,nudix_hydrolase_13	NCIH660_PROSTATE	0.06	1	0.1877	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	RP11-119F19.2--ANXA11	8	0	RP11-119F19.2	1059	chr10:81526027:-	ANXA11	14269	chr10:81935911:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0883	0	RP11-119F19.2->chr10:81422844-81526085:-,ANXA11->annexin_A11,chr10:81910645-81965328:-	NCIH660_PROSTATE	1	1	0.0883	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	MT-CO1--MT-ND1	7	3	MT-CO1	1699	chrM:6602:+	MT-ND1	6048	chrM:3812:+	INCL_NON_REF_SPLICE	YES	19260	9144	0	0	0.0773	0.0331	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH660_PROSTATE	0	0	0.1104	FALSE	39	30	6	19	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ATP8	5	11	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1784	70	0.01	0.19	0.0552	0.1214	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0.01	0.19	0.1766	FALSE	216	209	16	281	0	FALSE	ACH-000177
NCIH660_PROSTATE	RP11-120D5.1--MID1	6	7	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	2	36	0.87	0.27	0.0662	0.0773	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH660_PROSTATE	0.27	0.87	0.1435	FALSE	0	9	0	55	0	FALSE	ACH-000177
NCIH660_PROSTATE	RP11-96H19.1--RP11-446N19.1	7	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0773	0.0331	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH660_PROSTATE	1	1	0.1104	FALSE	515	4851	409	746	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND5--MT-ATP8	3	18	MT-ND5	2279	chrM:13615:+	MT-ATP8	5874	chrM:8427:+	INCL_NON_REF_SPLICE	YES	2906	0	0.01	1	0.0331	0.1987	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0.01	1	0.2318	FALSE	43	37	8	105	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND1--MT-RNR2	7	1	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	13	7620	0.38	0	0.0773	0.011	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH660_PROSTATE	0	0.38	0.0883	FALSE	120	26	5	87	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND5--MT-ATP8	3	17	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	4109	0	0	1	0.0331	0.1877	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	1	0.2208	FALSE	43	37	8	105	0	FALSE	ACH-000177
NCIH660_PROSTATE	PPA1--NUDT13	6	5	PPA1	2707	chr10:71990097:-	NUDT13	17666	chr10:74874115:+	ONLY_REF_SPLICE	YES	263	1	0.04	0.92	0.0662	0.0552	PPA1->chr10:71962586-71993667:-,pyrophosphatase_(inorganic)_1,NUDT13->chr10:74870217-74891586:+,nudix_hydrolase_13	NCIH660_PROSTATE	0.04	0.92	0.1214	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	MT-ND5--MT-ATP8	3	16	MT-ND5	2281	chrM:13617:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	2976	0	0.01	1	0.0331	0.1766	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0.01	1	0.2097	FALSE	43	37	8	105	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND6--MT-TE	5	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0552	0.0883	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH660_PROSTATE	0.93	1	0.1435	FALSE	499	1288	110	792	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0773	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH660_PROSTATE	1	1	0.0773	FALSE	462	80	0	856	0	FALSE	ACH-000177
NCIH660_PROSTATE	MTATP8P1--MT-ND1	7	0	MTATP8P1	1065	chr1:568979:+	MT-ND1	4420	chrM:3519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0773	0	MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH660_PROSTATE	1	1	0.0773	FALSE	1	2	0	2	0	FALSE	ACH-000177
NCIH660_PROSTATE	TMPRSS2--ERG	7	0	TMPRSS2	3407	chr21:42880008:-	ERG	35606	chr21:39817544:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0773	0	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	NCIH660_PROSTATE	1	1	0.0773	TRUE	0	117	4	2	116	TRUE	ACH-000177
NCIH660_PROSTATE	TMPRSS2--ERG	6	4	TMPRSS2	3538	chr21:42879877:-	ERG	35606	chr21:39817544:-	ONLY_REF_SPLICE	YES	2	1	0.83	0.91	0.0662	0.0442	Cosmic{samples=6241,mutations=2603,papers=101},GTEx&tcga_normals:5/3694=0.14%,GTEx:0.14%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},YOSHIHARA_TCGA_num_samples[PRAD:59],chimerdb_pubmed{prostate cancer,prostate carcinomas,VCaP, VCaPMet},TMPRSS2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:42836478-42903043:-,transmembrane_protease,_serine_2,ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog	NCIH660_PROSTATE	0.83	0.91	0.1104	TRUE	0	117	4	2	116	TRUE	ACH-000177
NCIH660_PROSTATE	USP15--C12orf56	3	16	USP15	4846	chr12:62696701:+	C12orf56	40348	chr12:64724807:-	INCL_NON_REF_SPLICE	YES	60	7	0.24	0.73	0.0331	0.1766	USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,C12orf56->chr12:64660217-64784972:-,chromosome_12_open_reading_frame_56	NCIH660_PROSTATE	0.24	0.73	0.2097	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	MT-CO1--MT-ND1	6	3	MT-CO1	1324	chrM:6227:+	MT-ND1	5558	chrM:3322:+	INCL_NON_REF_SPLICE	YES	16154	0	0	1	0.0662	0.0331	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH660_PROSTATE	0	1	0.0993	FALSE	39	29	6	19	0	FALSE	ACH-000177
NCIH660_PROSTATE	WWOX--VAT1L	6	2	WWOX	10605	chr16:78198186:+	VAT1L	36619	chr16:77896645:+	ONLY_REF_SPLICE	YES	23	0	0.26	1	0.0662	0.0221	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	NCIH660_PROSTATE	0.26	1	0.0883	TRUE	0	0	0	2	0	TRUE	ACH-000177
NCIH660_PROSTATE	ACYP2--SPTBN1	6	1	ACYP2	13762	chr2:54365885:+	SPTBN1	31424	chr2:54826229:+	ONLY_REF_SPLICE	YES	28	86	0.2	0.08	0.0662	0.011	GTEx&tcga_normals:1/3694=0.03%,ACYP2->acylphosphatase_2,chr2:54197975-54532437:+,SPTBN1->chr2:54683422-54896812:+,spectrin_beta,_non-erythrocytic_1	NCIH660_PROSTATE	0.08	0.2	0.0772	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	GMDS--RIC8B	5	5	GMDS	1372	chr6:2245555:-	RIC8B	24253	chr12:107177775:+	ONLY_REF_SPLICE	YES	11	10	0.48	0.5	0.0552	0.0552	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,RIC8B->RIC8_guanine_nucleotide_exchange_factor_B,chr12:107168373-107283090:+	NCIH660_PROSTATE	0.48	0.5	0.1104	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ATP8	6	1	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	11444	0	0	1	0.0662	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	1	0.0772	FALSE	231	216	16	283	0	FALSE	ACH-000177
NCIH660_PROSTATE	FOXP1--PDCD6IP	2	16	FOXP1	19737	chr3:71247353:-	PDCD6IP	53953	chr3:33863447:+	ONLY_REF_SPLICE	YES	13	104	0.58	0.15	0.0221	0.1766	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,PDCD6IP->chr3:33839844-33911194:+,programmed_cell_death_6_interacting_protein	NCIH660_PROSTATE	0.15	0.58	0.1987	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	MT-CO1--MT-ND1	5	4	MT-CO1	1699	chrM:6602:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	NO	19260	7050	0	0	0.0552	0.0442	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH660_PROSTATE	0	0	0.0994	FALSE	39	30	6	19	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND5--MT-ATP8	4	8	MT-ND5	1613	chrM:12949:+	MT-ATP8	5867	chrM:8420:+	INCL_NON_REF_SPLICE	YES	4712	0	0	1	0.0442	0.0883	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	1	0.1325	FALSE	42	36	7	104	0	FALSE	ACH-000177
NCIH660_PROSTATE	RP11-97E7.1--FOXRED1	6	0	RP11-97E7.1	2311	chr4:172474370:-	FOXRED1	8526	chr11:126142474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0	GTEx_FI:{Brain=[count:5=pct:0.8],Spleen=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Liver=[count:1=pct:0.8]},RP11-97E7.1->chr4:172474151-172485418:-,FOXRED1->FAD-dependent_oxidoreductase_domain_containing_1,chr11:126138950-126148026:+	NCIH660_PROSTATE	1	1	0.0662	TRUE	5	3	0	5	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND1--MT-RNR2	5	3	MT-ND1	1297	chrM:3603:+	MT-RNR2	5502	chrM:2216:+	INCL_NON_REF_SPLICE	YES	18	8015	0.31	0	0.0552	0.0331	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH660_PROSTATE	0	0.31	0.0883	FALSE	120	26	5	87	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ATP8	3	10	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	9288	0	0	1	0.0331	0.1104	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	1	0.1435	FALSE	231	215	16	283	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND5--MT-ATP8	3	10	MT-ND5	2362	chrM:13698:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	2753	890	0	0.01	0.0331	0.1104	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	0.01	0.1435	FALSE	43	37	8	105	0	FALSE	ACH-000177
NCIH660_PROSTATE	RP11-495P10.2--RP11-403I13.4	5	2	RP11-495P10.2	1210	chr1:147931724:-	RP11-403I13.4	10510	chr1:149239868:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0552	0.0221	GTEx_FI:{Brain=[count:4=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Breast=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Fallopian_Tube=[count:1=pct:16.7]},RP11-495P10.2->chr1:147835127-147931933:-,RP11-403I13.4->chr1:149239531-149265510:+	NCIH660_PROSTATE	0.88	1	0.0773	TRUE	8	0	0	5	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND5--MT-ATP8	3	9	MT-ND5	1770	chrM:13106:+	MT-ATP8	5861	chrM:8414:+	INCL_NON_REF_SPLICE	YES	3537	0	0	1	0.0331	0.0994	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	1	0.1325	FALSE	43	37	8	105	0	FALSE	ACH-000177
NCIH660_PROSTATE	FOXP1--PDCD6IP	1	16	FOXP1	21397	chr3:71179649:-	PDCD6IP	53953	chr3:33863447:+	ONLY_REF_SPLICE	YES	16	104	0.52	0.14	0.011	0.1766	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,PDCD6IP->chr3:33839844-33911194:+,programmed_cell_death_6_interacting_protein	NCIH660_PROSTATE	0.14	0.52	0.1876	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	MT-CO1--MT-ND1	4	4	MT-CO1	1577	chrM:6480:+	MT-ND1	5559	chrM:3323:+	INCL_NON_REF_SPLICE	YES	17021	0	0	1	0.0442	0.0442	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH660_PROSTATE	0	1	0.0884	FALSE	39	30	6	19	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-CO1--MT-ND1	4	4	MT-CO1	1653	chrM:6556:+	MT-ND1	5761	chrM:3525:+	INCL_NON_REF_SPLICE	NO	19630	7419	0	0	0.0442	0.0442	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH660_PROSTATE	0	0	0.0884	FALSE	39	30	6	19	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ATP6--MT-CO1	3	7	MT-ATP6	1313	chrM:8839:+	MT-CO1	5211	chrM:6433:+	INCL_NON_REF_SPLICE	YES	11945	17512	0	0	0.0331	0.0773	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH660_PROSTATE	0	0	0.1104	FALSE	183	104	9	328	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ATP6--MT-CO1	3	7	MT-ATP6	1444	chrM:8970:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	8198	17192	0	0	0.0331	0.0773	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH660_PROSTATE	0	0	0.1104	FALSE	183	104	9	328	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-CO1--MT-ND1	4	3	MT-CO1	1703	chrM:6606:+	MT-ND1	6057	chrM:3821:+	INCL_NON_REF_SPLICE	NO	19038	9486	0	0	0.0442	0.0331	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH660_PROSTATE	0	0	0.0773	FALSE	39	30	6	19	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ND4L	4	3	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	18	0	0.28	1	0.0442	0.0331	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH660_PROSTATE	0.28	1	0.0773	FALSE	344	827	44	306	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ATP6--MT-CO2	4	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	27	6	0.18	0.5	0.0442	0.0221	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH660_PROSTATE	0.18	0.5	0.0663	FALSE	59	21	0	114	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-CO1--MT-ND1	4	2	MT-CO1	1647	chrM:6550:+	MT-ND1	6031	chrM:3795:+	INCL_NON_REF_SPLICE	NO	19390	8673	0	0	0.0442	0.0221	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH660_PROSTATE	0	0	0.0663	FALSE	39	30	6	19	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ATP8	3	6	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	9357	196	0	0.04	0.0331	0.0662	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	0.04	0.0993	FALSE	231	217	16	283	0	FALSE	ACH-000177
NCIH660_PROSTATE	RP11-120D5.1--MID1	3	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	36	0.82	0.2	0.0331	0.0662	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH660_PROSTATE	0.2	0.82	0.0993	FALSE	16	356	14	466	0	FALSE	ACH-000177
NCIH660_PROSTATE	SNX13--ATP2C1	4	2	SNX13	24890	chr7:17874384:-	ATP2C1	73876	chr3:130715597:+	ONLY_REF_SPLICE	YES	53	293	0.1	0.02	0.0442	0.0221	SNX13->chr7:17830385-17980124:-,sorting_nexin_13,ATP2C1->ATPase_secretory_pathway_Ca2+_transporting_1,chr3:130569439-130735556:+	NCIH660_PROSTATE	0.02	0.1	0.0663	TRUE	0	0	0	1	0	FALSE	ACH-000177
NCIH660_PROSTATE	DCAF7--DDX42	4	1	DCAF7	1355	chr17:61628176:+	DDX42	19248	chr17:61864394:+	ONLY_REF_SPLICE	YES	166	136	0.03	0.04	0.0442	0.011	DCAF7->DDB1_and_CUL4_associated_factor_7,chr17:61627822-61671639:+,DDX42->DEAD-box_helicase_42,chr17:61850963-61896677:+	NCIH660_PROSTATE	0.03	0.04	0.0552	TRUE	0	0	0	1	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	6682	17213	0	0	0.0442	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH660_PROSTATE	0	0	0.0552	FALSE	183	104	9	328	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	6565	17436	0	0	0.0442	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH660_PROSTATE	0	0	0.0552	FALSE	183	104	9	328	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	6812	19261	0	0	0.0442	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH660_PROSTATE	0	0	0.0552	FALSE	183	104	9	328	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND3--MT-ATP8	4	1	MT-ND3	1283	chrM:10341:+	MT-ATP8	4411	chrM:8430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0.011	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	1	1	0.0552	FALSE	351	233	23	137	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ATP8	4	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	8349	3	0	0.62	0.0442	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	0.62	0.0552	FALSE	230	198	14	283	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ATP8	4	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	8418	70	0	0.07	0.0442	0.011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	0.07	0.0552	FALSE	230	198	14	283	0	FALSE	ACH-000177
NCIH660_PROSTATE	PFKL--MT-ND4L	4	1	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	478	0	0.01	1	0.0442	0.011	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH660_PROSTATE	0.01	1	0.0552	FALSE	0	0	0	33	0	FALSE	ACH-000177
NCIH660_PROSTATE	E2F2--CTD-2309O5.3	4	0	E2F2	7503	chr1:23842827:-	CTD-2309O5.3	16464	chr17:3067183:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0442	0	E2F2->E2F_transcription_factor_2,Oncogene{Bushman},chr1:23832922-23857712:-,CTD-2309O5.3->chr17:3038263-3080325:-	NCIH660_PROSTATE	1	1	0.0442	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	MT-CO1--MT-ND1	4	0	MT-CO1	1653	chrM:6556:+	MT-ND1	6262	chrM:4026:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH660_PROSTATE	1	1	0.0442	FALSE	39	30	6	19	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ATP8	4	0	MT-ND4	1110	chrM:10869:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	1	1	0.0442	FALSE	230	193	14	283	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ATP8	4	0	MT-ND4	1015	chrM:10774:+	MT-ATP8	5404	chrM:8391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	1	1	0.0442	FALSE	230	190	14	283	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND5--MT-ATP8	3	4	MT-ND5	1331	chrM:12667:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	5862	0	0	1	0.0331	0.0442	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	1	0.0773	FALSE	42	35	7	104	0	FALSE	ACH-000177
NCIH660_PROSTATE	RSPH1--CREB5	4	0	RSPH1	1222	chr21:43916243:-	CREB5	34530	chr7:28843816:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0442	0	RSPH1->Oncogene{Bushman},chr21:43892596-43916464:-,radial_spoke_head_1_homolog,CREB5->cAMP_responsive_element_binding_protein_5,chr7:28338940-28865511:+	NCIH660_PROSTATE	1	1	0.0442	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	MAF--RP11-679B19.2	3	3	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0331	0.0331	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	NCIH660_PROSTATE	1	1	0.0662	TRUE	48	25	3	38	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ATP6--MT-CO2	3	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	27	6	0.18	0.5	0.0331	0.0331	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH660_PROSTATE	0.18	0.5	0.0662	FALSE	59	21	0	114	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND1--MT-RNR2	3	3	MT-ND1	1462	chrM:3768:+	MT-RNR2	5687	chrM:2401:+	INCL_NON_REF_SPLICE	YES	85	9521	0.07	0	0.0331	0.0331	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH660_PROSTATE	0	0.07	0.0662	FALSE	120	26	5	87	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ATP8	3	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	10786	0	0	1	0.0331	0.0331	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	1	0.0662	FALSE	231	217	16	283	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ATP8	3	3	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	10622	0	0	1	0.0331	0.0331	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	1	0.0662	FALSE	231	217	16	283	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ATP8	3	2	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	11176	0	0	1	0.0331	0.0221	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	1	0.0552	FALSE	231	217	16	283	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ATP8	3	2	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	9766	1174	0	0	0.0331	0.0221	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	0	0.0552	FALSE	231	217	16	283	0	FALSE	ACH-000177
NCIH660_PROSTATE	RAB10--HADHB	3	2	RAB10	1629	chr2:26257604:+	HADHB	23033	chr2:26501482:+	ONLY_REF_SPLICE	YES	118	142	0.04	0.03	0.0331	0.0221	GTEx_FI:{Skin=[count:1=pct:0.3],Spleen=[count:1=pct:0.9]},RAB10->RAB10,_member_RAS_oncogene_family,chr2:26256976-26360323:+,HADHB->chr2:26466038-26513336:+,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_beta_subunit	NCIH660_PROSTATE	0.03	0.04	0.0552	TRUE	0	0	0	1	0	FALSE	ACH-000177
NCIH660_PROSTATE	FOXP1--PDCD6IP	2	5	FOXP1	15873	chr3:71348971:-	PDCD6IP	51546	chr3:33853564:+	ONLY_REF_SPLICE	YES	34	129	0.17	0.05	0.0221	0.0552	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,PDCD6IP->chr3:33839844-33911194:+,programmed_cell_death_6_interacting_protein	NCIH660_PROSTATE	0.05	0.17	0.0773	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7962	19261	0	0	0.0331	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH660_PROSTATE	0	0	0.0441	FALSE	183	104	9	328	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ATP6--MT-CO2	3	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	24	5	0.14	0.44	0.0331	0.011	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH660_PROSTATE	0.14	0.44	0.0441	FALSE	59	21	0	114	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND1--MT-RNR2	3	1	MT-ND1	1027	chrM:3333:+	MT-RNR2	6484	chrM:3198:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0331	0.011	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH660_PROSTATE	1	1	0.0441	FALSE	92	21	4	61	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND1--MT-RNR2	3	1	MT-ND1	1272	chrM:3578:+	MT-RNR2	5546	chrM:2260:+	INCL_NON_REF_SPLICE	YES	13	7652	0.24	0	0.0331	0.011	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH660_PROSTATE	0	0.24	0.0441	FALSE	120	26	5	87	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND5--MT-ATP8	3	1	MT-ND5	1212	chrM:12548:+	MT-ATP8	5927	chrM:8480:+	INCL_NON_REF_SPLICE	YES	5433	409	0	0.01	0.0331	0.011	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	0	0.01	0.0441	FALSE	41	30	6	102	0	FALSE	ACH-000177
NCIH660_PROSTATE	MGST1--LMO3	3	0	MGST1	16905	chr12:16536538:+	LMO3	38371	chr12:16713472:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0331	0	NEIGHBORS_OVERLAP:+:-:[60886],MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,LMO3->LIM_domain_only_3,Oncogene{Bushman},chr12:16701307-16763528:-	NCIH660_PROSTATE	1	1	0.0331	FALSE	0	5	0	3	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND3--MT-ATP8	3	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4444	chrM:8463:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	1	1	0.0331	FALSE	351	233	23	137	0	FALSE	ACH-000177
NCIH660_PROSTATE	MT-ND4--MT-ATP8	3	0	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH660_PROSTATE	1	1	0.0331	FALSE	230	193	14	283	0	FALSE	ACH-000177
NCIH660_PROSTATE	TIMM23B--LINC00843	3	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0331	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH660_PROSTATE	1	1	0.0331	TRUE	62	24	1	171	0	FALSE	ACH-000177
NCIH660_PROSTATE	RP11-119F19.2--ANXA11	2	3	RP11-119F19.2	3683	chr10:81428142:-	ANXA11	12754	chr10:81941211:-	ONLY_REF_SPLICE	YES	2	172	0.71	0.03	0.0221	0.0331	RP11-119F19.2->chr10:81422844-81526085:-,ANXA11->annexin_A11,chr10:81910645-81965328:-	NCIH660_PROSTATE	0.03	0.71	0.0552	TRUE	0	0	0	1	0	FALSE	ACH-000177
NCIH660_PROSTATE	RP11-120D5.1--MID1	1	7	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	36	0.8	0.18	0.011	0.0773	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH660_PROSTATE	0.18	0.8	0.0883	FALSE	2	31	0	60	0	FALSE	ACH-000177
NCIH660_PROSTATE	RP11-108K3.1--GLDN	1	5	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	NO	3	5	0.67	0.55	0.011	0.0552	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH660_PROSTATE	0.55	0.67	0.0662	FALSE	0	19	0	46	0	FALSE	ACH-000177
NCIH660_PROSTATE	ZNF420--TMLHE	2	1	ZNF420	3423	chr19:37571290:+	TMLHE	18020	chrX:154774938:-	ONLY_REF_SPLICE	YES	85	0	0.03	1	0.0221	0.011	ZNF420->chr19:37498759-37621216:+,zinc_finger_protein_420,TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon	NCIH660_PROSTATE	0.03	1	0.0331	TRUE	0	0	0	1	0	FALSE	ACH-000177
NCIH660_PROSTATE	ZNF738--CHMP1A	2	1	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	122	185	0.02	0.02	0.0221	0.011	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH660_PROSTATE	0.02	0.02	0.0331	TRUE	1	20	1	28	3	FALSE	ACH-000177
NCIH660_PROSTATE	CPSF6--CHMP1A	2	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH660_PROSTATE	1	1	0.0221	TRUE	95	74	6	34	0	FALSE	ACH-000177
NCIH660_PROSTATE	CTD-3138B18.5--CTD-3138B18.4	2	0	CTD-3138B18.5	1286	chr19:58789889:-	CTD-3138B18.4	8812	chr19:58755331:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	NEIGHBORS_OVERLAP:-:+:[21535],CTD-3138B18.5->chr19:58768639-58790174:-,CTD-3138B18.4->chr19:58740831-58798173:+	NCIH660_PROSTATE	1	1	0.0221	FALSE	0	0	0	1	0	FALSE	ACH-000177
NCIH660_PROSTATE	NUDT13--NCK1	2	0	NUDT13	9252	chr10:74886585:+	NCK1	17843	chr3:136646826:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	NUDT13->chr10:74870217-74891586:+,nudix_hydrolase_13,NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+	NCIH660_PROSTATE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	PPP2R5C--HSP90AA1	2	0	PPP2R5C	26512	chr14:102359445:+	HSP90AA1	50435	chr14:102548781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	PPP2R5C->chr14:102228135-102394326:+,protein_phosphatase_2_regulatory_subunit_B',_gamma,HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1	NCIH660_PROSTATE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	RP11-108K3.1--GLDN	1	4	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	5	0.83	0.5	0.011	0.0442	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH660_PROSTATE	0.5	0.83	0.0552	FALSE	0	30	1	55	0	FALSE	ACH-000177
NCIH660_PROSTATE	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH660_PROSTATE	1	1	0.0221	TRUE	274	363	69	150	0	FALSE	ACH-000177
NCIH660_PROSTATE	RSPH1--CREB5	2	0	RSPH1	2544	chr21:43912868:-	CREB5	34530	chr7:28843816:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	RSPH1->Oncogene{Bushman},chr21:43892596-43916464:-,radial_spoke_head_1_homolog,CREB5->cAMP_responsive_element_binding_protein_5,chr7:28338940-28865511:+	NCIH660_PROSTATE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	RTKN--FOXJ3	2	0	RTKN	1717	chr2:74668833:-	FOXJ3	16583	chr1:42789498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	RTKN->chr2:74652963-74669549:-,rhotekin,FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3	NCIH660_PROSTATE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NCIH660_PROSTATE	1	1	0.0221	TRUE	53	396	64	110	0	FALSE	ACH-000177
NCIH660_PROSTATE	SEC31A--ATF7	2	0	SEC31A	2090	chr4:83821230:-	ATF7	45078	chr12:53946421:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-,ATF7->activating_transcription_factor_7,chr12:53901640-54020199:-	NCIH660_PROSTATE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	SLC24A3--DTD1	2	0	SLC24A3	2468	chr20:19261731:+	DTD1	30533	chr20:18724744:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	SLC24A3->chr20:19193290-19703581:+,solute_carrier_family_24_member_3,DTD1->D-tyrosyl-tRNA_deacylase_1,chr20:18568537-18744561:+	NCIH660_PROSTATE	1	1	0.0221	TRUE	0	2	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	U2SURP--CDV3	2	0	U2SURP	4885	chr3:142720515:+	CDV3	42985	chr3:133302846:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+,CDV3->CDV3_homolog,chr3:133292574-133309105:+	NCIH660_PROSTATE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	BCL11A--RP11-444A22.1	1	3	BCL11A	3729	chr2:60773106:-	RP11-444A22.1	24043	chr2:60054406:-	ONLY_REF_SPLICE	YES	20	0	0.17	1	0.011	0.0331	BCL11A->B-cell_CLL/lymphoma_11A,Oncogene{Bushman},chr2:60678302-60780702:-,RP11-444A22.1->chr2:59445815-60327335:-	NCIH660_PROSTATE	0.17	1	0.0441	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	RP11-120D5.1--MID1	1	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	36	0.57	0.1	0.011	0.0331	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH660_PROSTATE	0.1	0.57	0.0441	FALSE	0	48	1	163	0	FALSE	ACH-000177
NCIH660_PROSTATE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.011	0.0331	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH660_PROSTATE	1	1	0.0441	FALSE	192	492	57	212	0	FALSE	ACH-000177
NCIH660_PROSTATE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0.0331	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH660_PROSTATE	1	1	0.0441	FALSE	407	2205	196	549	0	FALSE	ACH-000177
NCIH660_PROSTATE	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.011	0.0221	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH660_PROSTATE	1	1	0.0331	TRUE	160	277	29	98	0	FALSE	ACH-000177
NCIH660_PROSTATE	RP11-495P10.2--RP11-403I13.4	1	2	RP11-495P10.2	2172	chr1:147930762:-	RP11-403I13.4	10510	chr1:149239868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0.0221	GTEx_FI:{Brain=[count:4=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Breast=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Fallopian_Tube=[count:1=pct:16.7]},RP11-495P10.2->chr1:147835127-147931933:-,RP11-403I13.4->chr1:149239531-149265510:+	NCIH660_PROSTATE	1	1	0.0331	TRUE	8	0	0	5	0	FALSE	ACH-000177
NCIH660_PROSTATE	BCL11A--RP11-444A22.1	1	1	BCL11A	3729	chr2:60773106:-	RP11-444A22.1	25169	chr2:59739340:-	ONLY_REF_SPLICE	YES	20	0	0.09	1	0.011	0.011	BCL11A->B-cell_CLL/lymphoma_11A,Oncogene{Bushman},chr2:60678302-60780702:-,RP11-444A22.1->chr2:59445815-60327335:-	NCIH660_PROSTATE	0.09	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000177
NCIH660_PROSTATE	FBXO42--HP1BP3	1	1	FBXO42	4719	chr1:16621278:-	HP1BP3	22270	chr1:21107033:-	ONLY_REF_SPLICE	NO	83	357	0.02	0.01	0.011	0.011	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	NCIH660_PROSTATE	0.01	0.02	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000177
NCIH660_PROSTATE	RBM6--MON1A	1	1	RBM6	1219	chr3:49977658:+	MON1A	37904	chr3:49950792:-	ONLY_REF_SPLICE	YES	51	35	0.04	0.05	0.011	0.011	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},LOCAL_INVERSION:+:-:[9834],RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,MON1A->MON1_homolog_A,_secretory_trafficking_associated,chr3:49946302-49967606:-	NCIH660_PROSTATE	0.04	0.05	0.022	TRUE	0	0	0	1	0	FALSE	ACH-000177
NCIH660_PROSTATE	RP11-108K3.1--GLDN	1	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	NO	1	4	0.67	0.33	0.011	0.011	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH660_PROSTATE	0.33	0.67	0.022	FALSE	1	20	0	46	0	FALSE	ACH-000177
NCIH660_PROSTATE	RP11-495P10.2--RP11-403I13.4	1	1	RP11-495P10.2	1210	chr1:147931724:-	RP11-403I13.4	12850	chr1:149245050:+	ONLY_REF_SPLICE	NO	1	2	0.67	0.5	0.011	0.011	GTEx_FI:{Brain=[count:4=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Breast=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Fallopian_Tube=[count:1=pct:16.7]},RP11-495P10.2->chr1:147835127-147931933:-,RP11-403I13.4->chr1:149239531-149265510:+	NCIH660_PROSTATE	0.5	0.67	0.022	TRUE	6	0	0	2	0	FALSE	ACH-000177
NCIH660_PROSTATE	SNX13--ATP2C1	1	1	SNX13	23785	chr7:17879430:-	ATP2C1	73876	chr3:130715597:+	ONLY_REF_SPLICE	YES	62	293	0.03	0.01	0.011	0.011	SNX13->chr7:17830385-17980124:-,sorting_nexin_13,ATP2C1->ATPase_secretory_pathway_Ca2+_transporting_1,chr3:130569439-130735556:+	NCIH660_PROSTATE	0.01	0.03	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000177
NCIH660_PROSTATE	WWOX--RP11-319G9.5	1	1	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	NO	26	0	0.07	1	0.011	0.011	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	NCIH660_PROSTATE	0.07	1	0.022	FALSE	33	33	2	19	0	FALSE	ACH-000177
NCIH660_PROSTATE	ZNF420--TMLHE	1	1	ZNF420	2379	chr19:37569472:+	TMLHE	18020	chrX:154774938:-	ONLY_REF_SPLICE	YES	47	0	0.04	1	0.011	0.011	ZNF420->chr19:37498759-37621216:+,zinc_finger_protein_420,TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon	NCIH660_PROSTATE	0.04	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000177
OCUM1_STOMACH	RP11-1143G9.4--ERLIN2	1684	3	RP11-1143G9.4	1460	chr12:69747546:-	ERLIN2	18259	chr8:37613448:+	INCL_NON_REF_SPLICE	YES	3683	47	0.31	0.97	20.1522	0.0359	RP11-1143G9.4->chr12:69747273-69748005:-,ERLIN2->ER_lipid_raft_associated_2,chr8:37594117-37616619:+	OCUM1_STOMACH	0.31	0.97	20.1881	TRUE	0	0	0	1	0	TRUE	ACH-000247
OCUM1_STOMACH	TIMM23B--LINC00843	95	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1369	0.3111	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OCUM1_STOMACH	0.99	1	1.448	TRUE	508	994	45	981	0	FALSE	ACH-000247
OCUM1_STOMACH	RP11-1143G9.4--ERLIN2	93	2	RP11-1143G9.4	1489	chr12:69747517:-	ERLIN2	21081	chr8:37616270:+	INCL_NON_REF_SPLICE	YES	3585	1	0.03	0.99	1.1129	0.0239	RP11-1143G9.4->chr12:69747273-69748005:-,ERLIN2->ER_lipid_raft_associated_2,chr8:37594117-37616619:+	OCUM1_STOMACH	0.03	0.99	1.1368	TRUE	0	0	0	1	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-TA--MT-TC	54	11	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6462	0.1316	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCUM1_STOMACH	1	1	0.7778	FALSE	462	80	0	856	0	FALSE	ACH-000247
OCUM1_STOMACH	TIMM23--RP11-464F9.1	47	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5624	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OCUM1_STOMACH	1	1	0.5624	TRUE	519	3926	326	965	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND6--MT-TE	36	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.4308	0.0239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCUM1_STOMACH	0.97	1	0.4547	FALSE	499	1288	110	792	0	FALSE	ACH-000247
OCUM1_STOMACH	SLC1A5--MT-ND4L	19	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1406	0	0.01	1	0.2274	0.012	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCUM1_STOMACH	0.01	1	0.2394	FALSE	0	0	0	189	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND6--MT-TE	14	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.1675	0.1915	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCUM1_STOMACH	0.94	1	0.359	FALSE	499	1288	110	792	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ATP6--MT-RNR2	16	5	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	12108	0	0	1	0.1915	0.0598	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCUM1_STOMACH	0	1	0.2513	FALSE	63	17	1	58	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ATP6--MT-RNR2	16	3	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	12108	9895	0	0	0.1915	0.0359	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCUM1_STOMACH	0	0	0.2274	FALSE	63	17	1	58	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND6--MT-TE	15	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1795	0.0239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCUM1_STOMACH	0.94	1	0.2034	FALSE	499	1288	110	792	0	FALSE	ACH-000247
OCUM1_STOMACH	NDC1--GLIS1	13	8	NDC1	17494	chr1:54252831:-	GLIS1	34155	chr1:53975700:-	ONLY_REF_SPLICE	YES	39	0	0.35	1	0.1556	0.0957	NEIGHBORS[31256],NDC1->NDC1_transmembrane_nucleoporin,chr1:54231133-54304533:-,GLIS1->GLIS_family_zinc_finger_1,chr1:53971910-54199877:-	OCUM1_STOMACH	0.35	1	0.2513	FALSE	0	0	0	1	0	FALSE	ACH-000247
OCUM1_STOMACH	ZNF654--HMGB2	15	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1795	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OCUM1_STOMACH	1	1	0.1795	TRUE	0	0	0	518	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND4--MT-ATP8	13	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1556	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCUM1_STOMACH	1	1	0.1556	FALSE	230	198	14	283	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-TA--MT-TC	9	10	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1077	0.1197	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCUM1_STOMACH	1	1	0.2274	FALSE	462	80	0	856	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND4--MT-ATP8	11	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1316	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCUM1_STOMACH	1	1	0.1316	FALSE	231	205	14	283	0	FALSE	ACH-000247
OCUM1_STOMACH	NRIP1--AF127936.7	10	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1197	0.0359	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OCUM1_STOMACH	1	1	0.1556	FALSE	292	1546	117	613	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ATP6--MT-RNR2	10	2	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	11619	9698	0	0	0.1197	0.0239	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCUM1_STOMACH	0	0	0.1436	FALSE	63	17	1	58	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ATP6--MT-RNR2	10	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1197	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCUM1_STOMACH	1	1	0.1197	FALSE	63	17	1	58	0	FALSE	ACH-000247
OCUM1_STOMACH	AP000350.4--PKM	8	5	AP000350.4	3774	chr22:24236611:-	PKM	7428	chr15:72523509:-	INCL_NON_REF_SPLICE	YES	0	88	1	0.13	0.0957	0.0598	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	OCUM1_STOMACH	0.13	1	0.1555	TRUE	0	0	0	14	0	TRUE	ACH-000247
OCUM1_STOMACH	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2466	0	0	1	0.1077	0.012	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCUM1_STOMACH	0	1	0.1197	FALSE	13	9	0	364	0	FALSE	ACH-000247
OCUM1_STOMACH	EEF2--RPS28	9	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1077	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCUM1_STOMACH	1	1	0.1077	TRUE	0	0	0	100	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND6--MT-TE	3	24	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0359	0.2872	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCUM1_STOMACH	0.93	1	0.3231	FALSE	499	1288	110	792	0	FALSE	ACH-000247
OCUM1_STOMACH	SP1--ESPL1	8	3	SP1	4447	chr12:53777406:+	ESPL1	32267	chr12:53681907:+	INCL_NON_REF_SPLICE	YES	127	31	0.08	0.26	0.0957	0.0359	LOCAL_REARRANGEMENT:+:[86533],SP1->Sp1_transcription_factor,chr12:53773960-53810230:+,ESPL1->chr12:53662083-53687427:+,extra_spindle_pole_bodies_like_1,_separase	OCUM1_STOMACH	0.08	0.26	0.1316	TRUE	0	0	0	1	0	TRUE	ACH-000247
OCUM1_STOMACH	MT-ND6--MT-TE	4	16	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0479	0.1915	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCUM1_STOMACH	0.95	1	0.2394	FALSE	499	1288	110	792	0	FALSE	ACH-000247
OCUM1_STOMACH	JSRP1--RPS28	5	6	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0598	0.0718	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCUM1_STOMACH	0.92	1	0.1316	TRUE	0	1	0	84	1	FALSE	ACH-000247
OCUM1_STOMACH	MT-ATP6--MT-CO1	6	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12585	23557	0	0	0.0718	0.0239	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OCUM1_STOMACH	0	0	0.0957	FALSE	183	104	9	328	0	FALSE	ACH-000247
OCUM1_STOMACH	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2487	0	0	1	0.0718	0.012	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCUM1_STOMACH	0	1	0.0838	FALSE	13	9	0	364	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0718	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OCUM1_STOMACH	1	1	0.0718	FALSE	183	104	9	328	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND6--MT-TE	6	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0718	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCUM1_STOMACH	1	1	0.0718	FALSE	499	1288	110	792	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-TA--MT-TC	3	12	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0.1436	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCUM1_STOMACH	1	1	0.1795	FALSE	462	80	0	856	0	FALSE	ACH-000247
OCUM1_STOMACH	AMDHD1--CROCCP4	5	3	AMDHD1	2625	chr12:96341215:+	CROCCP4	15412	chr1:17077009:+	ONLY_REF_SPLICE	YES	13	0	0.38	1	0.0598	0.0359	AMDHD1->amidohydrolase_domain_containing_1,chr12:96337071-96362370:+,CROCCP4->chr1:17076728-17077459:+,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_4	OCUM1_STOMACH	0.38	1	0.0957	TRUE	0	0	0	1	0	TRUE	ACH-000247
OCUM1_STOMACH	SLC1A5--MT-ND4L	5	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1406	0	0	1	0.0598	0.012	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCUM1_STOMACH	0	1	0.0718	FALSE	0	0	0	189	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND4--MT-ATP8	5	0	MT-ND4	1112	chrM:10871:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCUM1_STOMACH	1	1	0.0598	FALSE	230	193	14	283	0	FALSE	ACH-000247
OCUM1_STOMACH	NRIP1--AF127936.7	4	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.53	1	0.0479	0.0479	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OCUM1_STOMACH	0.53	1	0.0958	FALSE	164	806	69	479	0	FALSE	ACH-000247
OCUM1_STOMACH	RP11-96H19.1--RP11-446N19.1	4	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0479	0.0479	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCUM1_STOMACH	1	1	0.0958	FALSE	515	4851	409	746	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND4--MT-ATP8	4	2	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	17	0	0.26	1	0.0479	0.0239	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCUM1_STOMACH	0.26	1	0.0718	FALSE	213	207	15	279	0	FALSE	ACH-000247
OCUM1_STOMACH	PFKL--MT-ND4L	4	2	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	743	0	0.01	1	0.0479	0.0239	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OCUM1_STOMACH	0.01	1	0.0718	FALSE	0	0	0	33	0	FALSE	ACH-000247
OCUM1_STOMACH	AP000350.4--PKM	3	5	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	89	1	0.08	0.0359	0.0598	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	OCUM1_STOMACH	0.08	1	0.0957	TRUE	0	0	0	14	0	TRUE	ACH-000247
OCUM1_STOMACH	MT-ATP6--MT-CO1	3	4	MT-ATP6	1258	chrM:8784:+	MT-CO1	5199	chrM:6421:+	INCL_NON_REF_SPLICE	YES	16341	21248	0	0	0.0359	0.0479	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OCUM1_STOMACH	0	0	0.0838	FALSE	183	104	9	328	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5387	chrM:2376:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCUM1_STOMACH	1	1	0.0479	FALSE	63	17	1	58	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-CO2--S100A6	4	0	MT-CO2	1233	chrM:7818:+	S100A6	4935	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	OCUM1_STOMACH	1	1	0.0479	FALSE	0	0	0	4	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND4--MT-ATP8	4	0	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCUM1_STOMACH	1	1	0.0479	FALSE	231	217	16	283	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0479	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCUM1_STOMACH	1	1	0.0479	FALSE	499	1288	110	792	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	11642	9667	0	0	0.0359	0.0359	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCUM1_STOMACH	0	0	0.0718	FALSE	63	17	1	58	0	FALSE	ACH-000247
OCUM1_STOMACH	NRIP1--AF127936.7	3	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0359	0.0359	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OCUM1_STOMACH	0.55	1	0.0718	FALSE	125	705	46	456	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	12497	48	0	0.09	0.0359	0.0239	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCUM1_STOMACH	0	0.09	0.0598	FALSE	231	217	16	283	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	2149	chrM:11908:+	MT-ATP8	5476	chrM:8463:+	INCL_NON_REF_SPLICE	YES	8001	2	0	0.71	0.0359	0.0239	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCUM1_STOMACH	0	0.71	0.0598	FALSE	231	215	16	283	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2165	48	0	0.09	0.0359	0.0239	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCUM1_STOMACH	0	0.09	0.0598	FALSE	216	209	16	281	0	FALSE	ACH-000247
OCUM1_STOMACH	EEF2--RPS28	3	1	EEF2	8854	chr19:3977458:-	RPS28	13630	chr19:8386413:+	INCL_NON_REF_SPLICE	YES	3881	0	0	1	0.0359	0.012	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OCUM1_STOMACH	0	1	0.0479	FALSE	0	0	0	100	0	FALSE	ACH-000247
OCUM1_STOMACH	KLK6--PTMA	3	1	KLK6	7099	chr19:51462364:-	PTMA	12230	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	2691	4	0	0.5	0.0359	0.012	KLK6->Oncogene{Bushman},chr19:51461887-51472929:-,kallikrein_related_peptidase_6,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	OCUM1_STOMACH	0	0.5	0.0479	FALSE	0	0	0	2	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND4--MT-ATP8	3	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13333	48	0	0.08	0.0359	0.012	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCUM1_STOMACH	0	0.08	0.0479	FALSE	231	217	16	283	0	FALSE	ACH-000247
OCUM1_STOMACH	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0.0598	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OCUM1_STOMACH	1	1	0.0837	FALSE	407	2205	196	549	0	FALSE	ACH-000247
OCUM1_STOMACH	AES--MTATP6P1	3	0	AES	2887	chr19:3061219:-	MTATP6P1	12247	chr1:569327:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	AES->amino-terminal_enhancer_of_split,chr19:3052908-3063105:-,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	OCUM1_STOMACH	1	1	0.0359	TRUE	0	0	0	3	0	TRUE	ACH-000247
OCUM1_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1081	chrM:8607:+	MT-CO1	5148	chrM:6370:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OCUM1_STOMACH	1	1	0.0359	FALSE	183	104	9	328	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OCUM1_STOMACH	1	1	0.0359	FALSE	183	104	9	328	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OCUM1_STOMACH	1	1	0.0359	FALSE	183	104	9	328	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1110	chrM:8636:+	MT-CO1	4969	chrM:6191:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OCUM1_STOMACH	1	1	0.0359	FALSE	183	103	9	328	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1132	chrM:8658:+	MT-CO1	5255	chrM:6477:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OCUM1_STOMACH	1	1	0.0359	FALSE	183	104	9	328	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1090	chrM:8616:+	MT-RNR2	5085	chrM:2074:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OCUM1_STOMACH	1	1	0.0359	FALSE	63	17	1	58	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1445	chrM:11204:+	MT-ATP8	5486	chrM:8473:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCUM1_STOMACH	1	1	0.0359	FALSE	231	217	16	283	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OCUM1_STOMACH	1	1	0.0359	FALSE	231	217	16	283	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCUM1_STOMACH	1	1	0.0359	FALSE	499	1288	110	792	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OCUM1_STOMACH	1	1	0.0359	FALSE	499	1288	110	792	0	FALSE	ACH-000247
OCUM1_STOMACH	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OCUM1_STOMACH	1	1	0.0359	FALSE	462	80	0	856	0	FALSE	ACH-000247
OCUM1_STOMACH	SP1--ESPL1	3	0	SP1	4447	chr12:53777406:+	ESPL1	32682	chr12:53682322:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[86533],SP1->Sp1_transcription_factor,chr12:53773960-53810230:+,ESPL1->chr12:53662083-53687427:+,extra_spindle_pole_bodies_like_1,_separase	OCUM1_STOMACH	1	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000247
OCUM1_STOMACH	CMTM8--CMTM7	2	3	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	51	28	0.09	0.15	0.0239	0.0359	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	OCUM1_STOMACH	0.09	0.15	0.0598	FALSE	118	557	29	88	0	FALSE	ACH-000247
OCUM1_STOMACH	AMDHD1--CROCCP4	2	1	AMDHD1	2625	chr12:96341215:+	CROCCP4	15571	chr1:17077168:+	ONLY_REF_SPLICE	YES	13	2	0.19	0.6	0.0239	0.012	AMDHD1->amidohydrolase_domain_containing_1,chr12:96337071-96362370:+,CROCCP4->chr1:17076728-17077459:+,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_4	OCUM1_STOMACH	0.19	0.6	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000247
OCUM1_STOMACH	ASPH--YLPM1	2	1	ASPH	8053	chr8:62593527:-	YLPM1	71619	chr14:75295916:+	ONLY_REF_SPLICE	YES	1541	92	0	0.03	0.0239	0.012	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,YLPM1->YLP_motif_containing_1,chr14:75230069-75322244:+	OCUM1_STOMACH	0	0.03	0.0359	FALSE	0	0	0	1	0	FALSE	ACH-000247
OCUM1_STOMACH	PHC2--CSMD2	2	1	PHC2	20560	chr1:33794471:-	CSMD2	68518	chr1:34092181:-	ONLY_REF_SPLICE	YES	363	0	0.01	1	0.0239	0.012	LOCAL_REARRANGEMENT:-:[82956],PHC2->chr1:33789224-33896653:-,polyhomeotic_homolog_2,CSMD2->CUB_and_Sushi_multiple_domains_2,chr1:33979609-34631443:-	OCUM1_STOMACH	0.01	1	0.0359	FALSE	0	0	0	1	0	FALSE	ACH-000247
OCUM1_STOMACH	RP11-114H23.1--RP11-114H23.2	2	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0.012	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	OCUM1_STOMACH	1	1	0.0359	FALSE	81	155	12	160	0	FALSE	ACH-000247
OCUM1_STOMACH	CPSF6--CYP3A5	2	0	CPSF6	11046	chr12:69656342:+	CYP3A5	21435	chr7:99273831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CYP3A5->chr7:99245817-99277621:-,cytochrome_P450_family_3_subfamily_A_member_5	OCUM1_STOMACH	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000247
OCUM1_STOMACH	MATR3--C9orf85	2	0	MATR3	3802	chr5:138614097:+	C9orf85	38501	chr9:74586421:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	MATR3->chr5:138609441-138667360:+,matrin_3,C9orf85->chr9:74526426-74600970:+,chromosome_9_open_reading_frame_85	OCUM1_STOMACH	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000247
OCUM1_STOMACH	RAB30-AS1--HNRNPUL2	2	0	RAB30-AS1	1637	chr11:82783744:+	HNRNPUL2	15454	chr11:62487663:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	RAB30-AS1->RAB30_antisense_RNA_1_(head_to_head),chr11:82783108-82817761:+,HNRNPUL2->chr11:62480102-62494821:-,heterogeneous_nuclear_ribonucleoprotein_U-like_2	OCUM1_STOMACH	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-000247
OCUM1_STOMACH	NDC1--GLIS1	1	3	NDC1	17494	chr1:54252831:-	GLIS1	36063	chr1:53972449:-	ONLY_REF_SPLICE	YES	39	7	0.09	0.36	0.012	0.0359	NEIGHBORS[31256],NDC1->NDC1_transmembrane_nucleoporin,chr1:54231133-54304533:-,GLIS1->GLIS_family_zinc_finger_1,chr1:53971910-54199877:-	OCUM1_STOMACH	0.09	0.36	0.0479	FALSE	0	0	0	1	0	FALSE	ACH-000247
OCUM1_STOMACH	SLC44A2--ITGB4	1	1	SLC44A2	12208	chr19:10753127:+	ITGB4	26940	chr17:73732132:+	ONLY_REF_SPLICE	YES	136	1314	0.01	0	0.012	0.012	SLC44A2->chr19:10713133-10755235:+,solute_carrier_family_44_member_2,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	OCUM1_STOMACH	0	0.01	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000247
OCUM1_STOMACH	TAOK1--TMEM97	1	1	TAOK1	1561	chr17:27718042:+	TMEM97	41952	chr17:26652529:+	ONLY_REF_SPLICE	YES	14	71	0.12	0.03	0.012	0.012	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,TMEM97->chr17:26646121-26655707:+,transmembrane_protein_97	OCUM1_STOMACH	0.03	0.12	0.024	TRUE	0	0	0	1	0	FALSE	ACH-000247
OCUM1_STOMACH	WRN--PPP2CB	1	1	WRN	1173	chr8:30891489:+	PPP2CB	43452	chr8:30657271:-	ONLY_REF_SPLICE	YES	19	324	0.1	0.01	0.012	0.012	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1},WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+,PPP2CB->chr8:30631973-30671830:-,protein_phosphatase_2_catalytic_subunit_beta	OCUM1_STOMACH	0.01	0.1	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000247
COLO678_LARGE_INTESTINE	TIMM23B--LINC00843	146	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.2852	0.2905	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COLO678_LARGE_INTESTINE	0.99	1	1.5757	TRUE	508	994	45	981	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	KANSL1--ARL17B	135	53	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	42	65	0.82	0.74	1.1884	0.4666	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	COLO678_LARGE_INTESTINE	0.74	0.82	1.655	TRUE	181	1564	124	196	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	TIMM23--RP11-464F9.1	84	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	125	5	0.41	0.95	0.7395	0.0264	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	COLO678_LARGE_INTESTINE	0.41	0.95	0.7659	TRUE	519	3926	326	965	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	NOTCH2NL--PDE4DIP	63	19	NOTCH2NL	1318	chr1:145209436:+	PDE4DIP	21604	chr1:145021167:-	ONLY_REF_SPLICE	YES	215	0	0.28	1	0.5546	0.1673	NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like,PDE4DIP->Oncogene{Bushman},chr1:144836157-145076186:-,phosphodiesterase_4D_interacting_protein	COLO678_LARGE_INTESTINE	0.28	1	0.7219	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	20	170	MT-ND4	1741	chrM:11500:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	2309	0	0.08	1	0.1761	1.4965	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.08	1	1.6726	FALSE	344	827	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	TBC1D8--CREG2	57	13	TBC1D8	9521	chr2:101675883:-	CREG2	34869	chr2:101971828:-	ONLY_REF_SPLICE	YES	19	2	0.79	0.97	0.5018	0.1144	LOCAL_REARRANGEMENT:-:[92685],TBC1D8->TBC1_domain_family_member_8,chr2:101624079-101869328:-,CREG2->cellular_repressor_of_E1A_stimulated_genes_2,chr2:101962013-102004057:-	COLO678_LARGE_INTESTINE	0.79	0.97	0.6162	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	SUZ12P--RP11-640N20.8	51	9	SUZ12P	5451	chr17:29062115:+	RP11-640N20.8	23514	chr17:30415259:-	ONLY_REF_SPLICE	YES	88	0	0.41	1	0.449	0.0792	SUZ12P->chr17:29036317-29117926:+,RP11-640N20.8->chr17:30415179-30421952:-	COLO678_LARGE_INTESTINE	0.41	1	0.5282	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	168	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	15	0	0.92	1	0.0264	1.4789	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.92	1	1.5053	FALSE	344	827	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	168	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	20	0	0.9	1	0.0264	1.4789	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.9	1	1.5053	FALSE	344	826	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	168	MT-ND4	2041	chrM:11800:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	8490	1	0.02	0.99	0.0264	1.4789	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.02	0.99	1.5053	FALSE	344	826	44	305	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	162	MT-ND4	1114	chrM:10873:+	MT-ND4L	5509	chrM:10600:+	INCL_NON_REF_SPLICE	YES	13	3	0.93	0.98	0.0264	1.4261	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.93	0.98	1.4525	FALSE	344	826	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MPRIP--DRG2	40	13	MPRIP	4886	chr17:16981390:+	DRG2	52696	chr17:17997127:+	ONLY_REF_SPLICE	YES	121	55	0.3	0.49	0.3521	0.1144	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,DRG2->chr17:17991200-18011285:+,developmentally_regulated_GTP_binding_protein_2	COLO678_LARGE_INTESTINE	0.3	0.49	0.4665	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	15	109	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	3262	0	0.04	1	0.132	0.9595	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.04	1	1.0915	FALSE	344	827	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	RP11-123O10.4--GRIP1	39	11	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3433	0.0968	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO678_LARGE_INTESTINE	1	1	0.4401	FALSE	416	2512	207	587	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	WDFY3--RP11-359D14.3	37	9	WDFY3	10356	chr4:85758082:-	RP11-359D14.3	86039	chr4:77679745:-	ONLY_REF_SPLICE	YES	5	0	0.9	1	0.3257	0.0792	WDFY3->WD_repeat_and_FYVE_domain_containing_3,chr4:85590704-85887544:-,RP11-359D14.3->chr4:77679707-77723117:-	COLO678_LARGE_INTESTINE	0.9	1	0.4049	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	8	118	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	7	1	0.95	0.99	0.0704	1.0388	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.95	0.99	1.1092	FALSE	344	821	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-TA--MT-TC	37	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3257	0.0176	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO678_LARGE_INTESTINE	1	1	0.3433	FALSE	462	80	0	856	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	UBR1--TGM5	32	22	UBR1	21516	chr15:43322142:-	TGM5	65003	chr15:43528035:-	ONLY_REF_SPLICE	YES	19	0	0.74	1	0.2817	0.1937	UBR1->chr15:43235095-43398311:-,ubiquitin_protein_ligase_E3_component_n-recognin_1,TGM5->chr15:43524793-43559055:-,transglutaminase_5	COLO678_LARGE_INTESTINE	0.74	1	0.4754	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	ZNF654--HMGB2	37	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3257	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	COLO678_LARGE_INTESTINE	1	1	0.3257	TRUE	0	0	0	518	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND6--MT-TE	31	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2729	0.0352	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO678_LARGE_INTESTINE	1	1	0.3081	FALSE	499	1288	110	792	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	RP11-494M8.4--OVCH2	27	14	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	5	0	0.89	1	0.2377	0.1232	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	COLO678_LARGE_INTESTINE	0.89	1	0.3609	FALSE	32	0	0	22	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	109	MT-ND4	1199	chrM:10958:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	21	0	0.84	1	0.0264	0.9595	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.84	1	0.9859	FALSE	344	826	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	103	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	23	0	0.82	1	0.0264	0.9067	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.82	1	0.9331	FALSE	344	827	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	FRMD5--CYFIP1	27	0	FRMD5	1300	chr15:44487151:-	CYFIP1	26766	chr15:22925777:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2377	0	FRMD5->FERM_domain_containing_5,chr15:44162962-44487450:-,CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1	COLO678_LARGE_INTESTINE	1	1	0.2377	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	COG3--TDRD3	20	11	COG3	16707	chr13:46083951:+	TDRD3	45092	chr13:61102501:+	ONLY_REF_SPLICE	YES	28	14	0.53	0.69	0.1761	0.0968	COG3->chr13:46039060-46110765:+,component_of_oligomeric_golgi_complex_3,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3	COLO678_LARGE_INTESTINE	0.53	0.69	0.2729	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	16	25	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	184	0	0.18	1	0.1408	0.2201	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.18	1	0.3609	FALSE	344	827	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND6--MT-TE	18	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1585	0.088	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO678_LARGE_INTESTINE	0.97	1	0.2465	FALSE	499	1288	110	792	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	CYFIP1--CHP1	17	11	CYFIP1	24657	chr15:22969362:+	CHP1	42717	chr15:41535865:+	ONLY_REF_SPLICE	YES	150	94	0.16	0.23	0.1497	0.0968	CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1,CHP1->calcineurin_like_EF-hand_protein_1,chr15:41523037-41574043:+	COLO678_LARGE_INTESTINE	0.16	0.23	0.2465	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	12	25	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2988	0	0.01	1	0.1056	0.2201	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.01	1	0.3257	FALSE	344	827	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MPRIP--DRG2	14	11	MPRIP	4886	chr17:16981390:+	DRG2	57013	chr17:18001584:+	ONLY_REF_SPLICE	YES	121	96	0.17	0.21	0.1232	0.0968	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,DRG2->chr17:17991200-18011285:+,developmentally_regulated_GTP_binding_protein_2	COLO678_LARGE_INTESTINE	0.17	0.21	0.22	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	NRIP1--AF127936.7	15	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.9	1	0.132	0.0352	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO678_LARGE_INTESTINE	0.9	1	0.1672	FALSE	292	1546	117	613	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	38	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	318	0	0.12	1	0.0528	0.3345	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.12	1	0.3873	FALSE	344	827	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	HSP90AB1--MT-RNR2	15	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1840	0	0.01	1	0.132	0.0088	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO678_LARGE_INTESTINE	0.01	1	0.1408	FALSE	13	9	0	364	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	40	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	7	0	0.87	1	0.044	0.3521	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.87	1	0.3961	FALSE	344	821	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND6--MT-TE	14	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1232	0.0264	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO678_LARGE_INTESTINE	1	1	0.1496	FALSE	499	1288	110	792	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	38	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	18	0	0.7	1	0.0352	0.3345	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.7	1	0.3697	FALSE	344	827	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	25	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	22	0	0.58	1	0.044	0.2201	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.58	1	0.2641	FALSE	344	826	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	SF1--MACROD1	10	5	SF1	3289	chr11:64543970:-	MACROD1	17637	chr11:63919865:-	ONLY_REF_SPLICE	YES	118	27	0.11	0.36	0.088	0.044	GTEx&tcga_normals:1/3694=0.03%,SF1->chr11:64532078-64546258:-,splicing_factor_1,MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-	COLO678_LARGE_INTESTINE	0.11	0.36	0.132	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	25	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	21	0	0.58	1	0.0352	0.2201	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.58	1	0.2553	FALSE	344	827	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	25	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	18	0	0.61	1	0.0264	0.2201	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.61	1	0.2465	FALSE	344	826	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0792	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO678_LARGE_INTESTINE	1	1	0.0792	FALSE	230	193	14	283	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	RP11-494M8.4--OVCH2	5	15	RP11-494M8.4	8241	chr11:7873820:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	5	0	0.8	1	0.044	0.132	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	COLO678_LARGE_INTESTINE	0.8	1	0.176	FALSE	1	0	0	7	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	ELAC1--RP11-267C16.1	8	2	ELAC1	3437	chr18:48500931:+	RP11-267C16.1	15271	chr18:48991777:+	ONLY_REF_SPLICE	YES	25	0	0.29	1	0.0704	0.0176	ELAC1->chr18:48494361-48514491:+,elaC_ribonuclease_Z_1,RP11-267C16.1->chr18:48872619-49088939:+	COLO678_LARGE_INTESTINE	0.29	1	0.088	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND1--MT-RNR2	8	2	MT-ND1	1323	chrM:3629:+	MT-RNR2	5800	chrM:2514:+	INCL_NON_REF_SPLICE	YES	17	1369	0.37	0.01	0.0704	0.0176	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO678_LARGE_INTESTINE	0.01	0.37	0.088	FALSE	120	26	5	87	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	10	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	21	0	0.43	1	0.0528	0.088	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.43	1	0.1408	FALSE	344	827	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	RP11-120D5.1--MID1	8	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	63	0.69	0.12	0.0704	0.0088	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	COLO678_LARGE_INTESTINE	0.12	0.69	0.0792	FALSE	16	356	14	466	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-TA--MT-TC	7	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0.0352	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO678_LARGE_INTESTINE	1	1	0.0968	FALSE	462	80	0	856	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND1--MT-RNR2	5	11	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	11	0	0.59	1	0.044	0.0968	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO678_LARGE_INTESTINE	0.59	1	0.1408	FALSE	114	26	4	85	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND6--MT-TE	5	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0.0968	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO678_LARGE_INTESTINE	1	1	0.1408	FALSE	499	1288	110	792	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	ETV6--LOH12CR1	6	4	ETV6	1307	chr12:11803094:+	LOH12CR1	23195	chr12:12514140:+	ONLY_REF_SPLICE	YES	9	7	0.53	0.59	0.0528	0.0352	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,LOH12CR1->chr12:12510013-12619840:+	COLO678_LARGE_INTESTINE	0.53	0.59	0.088	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	MT-TA--MT-TC	6	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0.0352	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO678_LARGE_INTESTINE	1	1	0.088	FALSE	462	80	0	856	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	KANSL1--ARL17B	5	7	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	62	65	0.16	0.16	0.044	0.0616	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	COLO678_LARGE_INTESTINE	0.16	0.16	0.1056	TRUE	105	90	7	93	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND1--MT-RNR2	5	4	MT-ND1	1297	chrM:3603:+	MT-RNR2	5502	chrM:2216:+	INCL_NON_REF_SPLICE	YES	14	5564	0.39	0	0.044	0.0352	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO678_LARGE_INTESTINE	0	0.39	0.0792	FALSE	120	26	5	87	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND5--MT-ND6	6	0	MT-ND5	2795	chrM:14131:+	MT-ND6	6322	chrM:14164:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	COLO678_LARGE_INTESTINE	1	1	0.0528	FALSE	26	124	4	93	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	NIPA2--POLA1	6	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	COLO678_LARGE_INTESTINE	1	1	0.0528	TRUE	46	1352	75	139	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	6	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0528	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO678_LARGE_INTESTINE	1	1	0.0528	FALSE	515	4851	409	746	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	SPATA20--MT-CO3	6	0	SPATA20	9518	chr17:48631776:+	MT-CO3	14014	chrM:9265:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	SPATA20->chr17:48620419-48633213:+,spermatogenesis_associated_20,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	COLO678_LARGE_INTESTINE	1	1	0.0528	FALSE	0	0	0	2	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	ETV6--LOH12CR1	5	3	ETV6	1307	chr12:11803094:+	LOH12CR1	24339	chr12:12588562:+	ONLY_REF_SPLICE	YES	9	18	0.47	0.31	0.044	0.0264	ETV6->ArcherDX_panel,ETS_variant_6,FoundationOne_panel,Oncogene{Bushman},chr12:11802788-12048336:+,LOH12CR1->chr12:12510013-12619840:+	COLO678_LARGE_INTESTINE	0.31	0.47	0.0704	TRUE	0	1	0	1	1	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND1--MT-RNR2	3	11	MT-ND1	1297	chrM:3603:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	NO	14	0	0.5	1	0.0264	0.0968	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO678_LARGE_INTESTINE	0.5	1	0.1232	FALSE	114	26	4	85	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND1--MT-RNR2	3	11	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	11	0	0.56	1	0.0264	0.0968	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO678_LARGE_INTESTINE	0.56	1	0.1232	FALSE	114	26	4	85	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	10	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	21	0	0.38	1	0.0264	0.088	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	0.38	1	0.1144	FALSE	344	826	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND1--MT-RNR2	4	4	MT-ND1	1227	chrM:3533:+	MT-RNR2	5001	chrM:1715:+	INCL_NON_REF_SPLICE	YES	13	0	0.38	1	0.0352	0.0352	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO678_LARGE_INTESTINE	0.38	1	0.0704	FALSE	114	26	4	85	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8996	74	0	0.1	0.0352	0.0352	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO678_LARGE_INTESTINE	0	0.1	0.0704	FALSE	231	217	16	283	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO678_LARGE_INTESTINE	1	1	0.044	FALSE	231	204	14	283	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	4	MT-ND4	1833	chrM:11592:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	9032	2	0	0.8	0.0352	0.0352	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO678_LARGE_INTESTINE	0	0.8	0.0704	FALSE	231	217	16	283	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO678_LARGE_INTESTINE	1	1	0.044	FALSE	462	80	0	856	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND5--MT-ND6	4	3	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0.0264	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	COLO678_LARGE_INTESTINE	1	1	0.0616	FALSE	26	124	4	93	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	6	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1825	74	0	0.11	0.0264	0.0528	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO678_LARGE_INTESTINE	0	0.11	0.0792	FALSE	216	209	16	281	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND6--MT-TE	4	2	MT-ND6	1261	chrM:14413:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0352	0.0176	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO678_LARGE_INTESTINE	0.86	1	0.0528	FALSE	499	1288	110	792	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	HSP90AB1--MT-RNR2	4	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1864	0	0	1	0.0352	0.0088	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO678_LARGE_INTESTINE	0	1	0.044	FALSE	13	9	0	364	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	TEFM--AC005562.1	4	1	TEFM	4294	chr17:29227431:-	AC005562.1	24211	chr17:28975385:+	ONLY_REF_SPLICE	YES	45	1	0.1	0.83	0.0352	0.0088	TEFM->chr17:29224354-29233838:-,transcription_elongation_factor,_mitochondrial,AC005562.1->chr17:28903482-28999807:+	COLO678_LARGE_INTESTINE	0.1	0.83	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND1--MT-RNR2	3	4	MT-ND1	1272	chrM:3578:+	MT-RNR2	5546	chrM:2260:+	INCL_NON_REF_SPLICE	YES	12	5409	0.37	0	0.0264	0.0352	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO678_LARGE_INTESTINE	0	0.37	0.0616	FALSE	120	26	5	87	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO678_LARGE_INTESTINE	1	1	0.0352	FALSE	230	193	14	283	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	0	MT-ND4	1285	chrM:11044:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO678_LARGE_INTESTINE	1	1	0.0352	FALSE	231	205	14	283	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	4	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	9248	2	0	0.78	0.0264	0.0352	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO678_LARGE_INTESTINE	0	0.78	0.0616	FALSE	231	217	16	283	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	4	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8679	74	0	0.09	0.0264	0.0352	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO678_LARGE_INTESTINE	0	0.09	0.0616	FALSE	231	215	16	283	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	4	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	8748	0	0	1	0.0264	0.0352	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO678_LARGE_INTESTINE	0	1	0.0616	FALSE	231	217	16	283	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	1	1	0.0352	FALSE	344	821	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	1	1	0.0352	FALSE	344	821	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	1	1	0.0352	FALSE	344	821	44	306	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	PFKM--MT-ND4L	4	0	PFKM	16513	chr12:48531603:+	MT-ND4L	27661	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	PFKM->chr12:48498922-48540187:+,phosphofructokinase,_muscle,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO678_LARGE_INTESTINE	1	1	0.0352	FALSE	0	0	0	8	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	TIMM23B--LINC00843	4	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0352	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COLO678_LARGE_INTESTINE	1	1	0.0352	TRUE	62	24	1	171	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	ELAC1--RP11-267C16.1	3	3	ELAC1	4905	chr18:48510933:+	RP11-267C16.1	15271	chr18:48991777:+	ONLY_REF_SPLICE	YES	15	0	0.29	1	0.0264	0.0264	ELAC1->chr18:48494361-48514491:+,elaC_ribonuclease_Z_1,RP11-267C16.1->chr18:48872619-49088939:+	COLO678_LARGE_INTESTINE	0.29	1	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	MPRIP--DRG2	3	3	MPRIP	4886	chr17:16981390:+	DRG2	59312	chr17:18003883:+	ONLY_REF_SPLICE	YES	121	73	0.05	0.08	0.0264	0.0264	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,DRG2->chr17:17991200-18011285:+,developmentally_regulated_GTP_binding_protein_2	COLO678_LARGE_INTESTINE	0.05	0.08	0.0528	TRUE	0	0	0	1	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	SUZ12P--RP11-640N20.8	3	2	SUZ12P	1513	chr17:29036829:+	RP11-640N20.8	23514	chr17:30415259:-	ONLY_REF_SPLICE	YES	61	0	0.08	1	0.0264	0.0176	SUZ12P->chr17:29036317-29117926:+,RP11-640N20.8->chr17:30415179-30421952:-	COLO678_LARGE_INTESTINE	0.08	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	ABR--NXN	3	0	ABR	10258	chr17:1028518:-	NXN	53249	chr17:729318:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	GTEx&tcga_normals:2/3694=0.05%,{Klijn_CCL:Head-Neck=1},NEIGHBORS[23748],ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-,NXN->chr17:702553-883010:-,nucleoredoxin	COLO678_LARGE_INTESTINE	1	1	0.0264	FALSE	0	1	0	2	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO678_LARGE_INTESTINE	1	1	0.0264	FALSE	231	205	14	283	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND5--MT-ND6	3	0	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	COLO678_LARGE_INTESTINE	1	1	0.0264	FALSE	26	124	4	93	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0264	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO678_LARGE_INTESTINE	1	1	0.0264	FALSE	499	1288	110	792	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	PRKCA--PITPNC1	3	0	PRKCA	4995	chr17:64492401:+	PITPNC1	39919	chr17:65528918:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[LUAD:1|SKCM:1],PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha,PITPNC1->chr17:65373575-65693372:+,phosphatidylinositol_transfer_protein,_cytoplasmic_1	COLO678_LARGE_INTESTINE	1	1	0.0264	TRUE	0	1	0	1	1	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	NRIP1--AF127936.7	2	3	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	2	3	0.71	0.62	0.0176	0.0264	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO678_LARGE_INTESTINE	0.62	0.71	0.044	FALSE	25	145	6	90	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	SUZ12P--RP11-640N20.8	2	3	SUZ12P	2931	chr17:29059141:+	RP11-640N20.8	23514	chr17:30415259:-	ONLY_REF_SPLICE	YES	114	0	0.04	1	0.0176	0.0264	SUZ12P->chr17:29036317-29117926:+,RP11-640N20.8->chr17:30415179-30421952:-	COLO678_LARGE_INTESTINE	0.04	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	CYFIP1--CHP1	1	6	CYFIP1	24657	chr15:22969362:+	CHP1	44016	chr15:41549108:+	ONLY_REF_SPLICE	YES	150	88	0.04	0.07	0.0088	0.0528	CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1,CHP1->calcineurin_like_EF-hand_protein_1,chr15:41523037-41574043:+	COLO678_LARGE_INTESTINE	0.04	0.07	0.0616	TRUE	0	0	0	1	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	ATL2--HNRNPLL	2	1	ATL2	1143	chr2:38604285:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	YES	71	66	0.04	0.04	0.0176	0.0088	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	COLO678_LARGE_INTESTINE	0.04	0.04	0.0264	TRUE	1	4	0	6	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	TEFM--AC005562.1	2	1	TEFM	3117	chr17:29231084:-	AC005562.1	24211	chr17:28975385:+	ONLY_REF_SPLICE	YES	32	1	0.09	0.75	0.0176	0.0088	TEFM->chr17:29224354-29233838:-,transcription_elongation_factor,_mitochondrial,AC005562.1->chr17:28903482-28999807:+	COLO678_LARGE_INTESTINE	0.09	0.75	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	ELAC1--RP11-267C16.1	2	0	ELAC1	3437	chr18:48500931:+	RP11-267C16.1	21395	chr18:49058482:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	ELAC1->chr18:48494361-48514491:+,elaC_ribonuclease_Z_1,RP11-267C16.1->chr18:48872619-49088939:+	COLO678_LARGE_INTESTINE	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	FRMD5--CYFIP1	2	0	FRMD5	1300	chr15:44487151:-	CYFIP1	26739	chr15:22925750:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	FRMD5->FERM_domain_containing_5,chr15:44162962-44487450:-,CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1	COLO678_LARGE_INTESTINE	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	MPRIP--DRG2	1	4	MPRIP	4886	chr17:16981390:+	DRG2	59106	chr17:18003677:+	ONLY_REF_SPLICE	YES	121	86	0.04	0.05	0.0088	0.0352	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,DRG2->chr17:17991200-18011285:+,developmentally_regulated_GTP_binding_protein_2	COLO678_LARGE_INTESTINE	0.04	0.05	0.044	TRUE	0	0	0	1	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	NRIP1--AF127936.7	1	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	21	0	0.19	1	0.0088	0.0352	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO678_LARGE_INTESTINE	0.19	1	0.044	FALSE	125	705	46	456	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	PPP1R12C--CNN2	2	0	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	COLO678_LARGE_INTESTINE	1	1	0.0176	TRUE	35	34	3	30	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	PSPC1P1--RBM4	2	0	PSPC1P1	1185	chr13:19801388:-	RBM4	19702	chr11:66433327:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	PSPC1P1->chr13:19775777-19801572:-,paraspeckle_component_1_pseudogene_1,RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+	COLO678_LARGE_INTESTINE	1	1	0.0176	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	RP11-494M8.4--OVCH2	2	0	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0176	0	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	COLO678_LARGE_INTESTINE	1	1	0.0176	FALSE	60	13	8	23	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	ZBTB4--KIAA0753	1	4	ZBTB4	4947	chr17:7369030:-	KIAA0753	30343	chr17:6499663:-	ONLY_REF_SPLICE	YES	78	17	0.06	0.23	0.0088	0.0352	ZBTB4->chr17:7362685-7387582:-,zinc_finger_and_BTB_domain_containing_4,KIAA0753->KIAA0753,chr17:6481468-6544247:-	COLO678_LARGE_INTESTINE	0.06	0.23	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	UBR1--TGM5	1	3	UBR1	20391	chr15:43324766:-	TGM5	65003	chr15:43528035:-	ONLY_REF_SPLICE	YES	10	0	0.29	1	0.0088	0.0264	UBR1->chr15:43235095-43398311:-,ubiquitin_protein_ligase_E3_component_n-recognin_1,TGM5->chr15:43524793-43559055:-,transglutaminase_5	COLO678_LARGE_INTESTINE	0.29	1	0.0352	TRUE	0	0	0	1	0	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0088	0.0176	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO678_LARGE_INTESTINE	0.75	1	0.0264	FALSE	93	270	15	244	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	ATL2--HNRNPLL	1	1	ATL2	6688	chr2:38570410:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	YES	45	66	0.04	0.03	0.0088	0.0088	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	COLO678_LARGE_INTESTINE	0.03	0.04	0.0176	TRUE	0	5	0	8	2	TRUE	ACH-000350
COLO678_LARGE_INTESTINE	MANSC1--GRIN2B	1	1	MANSC1	5112	chr12:12491354:-	GRIN2B	13429	chr12:13906849:-	ONLY_REF_SPLICE	YES	79	0	0.02	1	0.0088	0.0088	MANSC1->MANSC_domain_containing_1,chr12:12482198-12503475:-,GRIN2B->chr12:13693165-14133053:-,glutamate_ionotropic_receptor_NMDA_type_subunit_2B	COLO678_LARGE_INTESTINE	0.02	1	0.0176	TRUE	0	0	0	1	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	PPP6R3--IGHMBP2	1	1	PPP6R3	33075	chr11:68377491:+	IGHMBP2	48058	chr11:68696651:+	ONLY_REF_SPLICE	YES	225	3	0.01	0.4	0.0088	0.0088	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,IGHMBP2->chr11:68671310-68708070:+,immunoglobulin_mu_binding_protein_2	COLO678_LARGE_INTESTINE	0.01	0.4	0.0176	FALSE	0	0	0	1	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	RP11-11N5.1--FAT1	1	1	RP11-11N5.1	1400	chr4:187812522:+	FAT1	7960	chr4:187630999:-	ONLY_REF_SPLICE	YES	3	125	0.4	0.02	0.0088	0.0088	RP11-11N5.1->chr4:187812123-187813520:+,FAT1->ArcherDX_panel,FAT_atypical_cadherin_1,FoundationOne_panel,Oncogene{Bushman},chr4:187508937-187647876:-	COLO678_LARGE_INTESTINE	0.02	0.4	0.0176	TRUE	0	0	0	1	0	FALSE	ACH-000350
COLO678_LARGE_INTESTINE	ZFYVE16--RAP1B	1	1	ZFYVE16	1141	chr5:79703972:+	RAP1B	40679	chr12:69042479:+	ONLY_REF_SPLICE	YES	43	249	0.04	0.01	0.0088	0.0088	ZFYVE16->chr5:79703832-79775169:+,zinc_finger_FYVE-type_containing_16,RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+	COLO678_LARGE_INTESTINE	0.01	0.04	0.0176	FALSE	0	0	0	1	0	FALSE	ACH-000350
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THOC2--MTSS1	276	122	THOC2	3256	chrX:122840708:-	MTSS1	44405	chr8:125716432:-	ONLY_REF_SPLICE	YES	34	0	0.92	1	3.1062	1.373	{Klijn_CCL:Other=1},THOC2->THO_complex_2,chrX:122734412-122866906:-,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	4.4792	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	57	1	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	796	1	0.07	0.6415	0.0113	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.6528	FALSE	101	855	57	72	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR137B--IGL@	50	0	GPR137B	1048	chr1:236305879:+	IGL@	75258	chr22:23243154:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5627	0	GPR137B->G_protein-coupled_receptor_137B,chr1:236305832-236385165:+,IGL@->Oncogene{Bushman}	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5627	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THOC2--MTSS1	15	124	THOC2	4312	chrX:122837304:-	MTSS1	44405	chr8:125716432:-	ONLY_REF_SPLICE	YES	26	0	0.84	1	0.1688	1.3956	{Klijn_CCL:Other=1},THOC2->THO_complex_2,chrX:122734412-122866906:-,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	1	1.5644	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	38	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4277	0.1463	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.574	TRUE	508	994	45	981	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPR137B--IGL@	36	0	GPR137B	1048	chr1:236305879:+	IGL@	77896	chr22:23248510:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4052	0	GPR137B->G_protein-coupled_receptor_137B,chr1:236305832-236385165:+,IGL@->Oncogene{Bushman}	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4052	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THOC2--MTSS1	3	122	THOC2	3260	chrX:122840704:-	MTSS1	44405	chr8:125716432:-	ONLY_REF_SPLICE	YES	37	0	0.77	1	0.0338	1.373	{Klijn_CCL:Other=1},THOC2->THO_complex_2,chrX:122734412-122866906:-,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	1.4068	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	33	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3714	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3714	TRUE	0	0	0	518	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	21	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2363	0.0338	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2701	FALSE	462	80	0	856	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	14	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1576	0.0338	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1914	FALSE	499	1288	110	792	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	14	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1576	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1576	TRUE	519	3926	326	965	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	10	2	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	1272	1	0.01	0.1125	0.0225	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.135	FALSE	101	855	57	72	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	10	1	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	758	1	0.01	0.1125	0.0113	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1238	FALSE	101	855	57	72	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.09	0.0338	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.1238	FALSE	499	1288	110	792	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	7	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	2347	0	0	1	0.0788	0.0113	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0901	FALSE	0	0	0	100	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	7	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0788	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0788	FALSE	183	104	9	328	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0.0338	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1013	FALSE	499	1288	110	792	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	3	MT-ND6	1136	chrM:14538:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	NO	2	0	0.78	1	0.045	0.0338	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.0788	FALSE	499	1288	110	792	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.045	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.045	FALSE	13	9	0	364	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	3	2	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	1417	1	0	0.0338	0.0225	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0563	FALSE	101	855	57	72	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	3	1	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	296	1	0.01	0.0338	0.0113	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0451	FALSE	101	855	57	72	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	3	1	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	5	731	0.44	0.01	0.0338	0.0113	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.44	0.0451	FALSE	101	855	57	72	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	3	1	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	977	830	0	0	0.0338	0.0113	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0451	FALSE	101	855	57	72	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAS6-AS1--TFDP1	3	0	GAS6-AS1	1062	chr13:114518664:+	TFDP1	11094	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0	GAS6-AS1->GAS6_antisense_RNA_1,chr13:114518603-114542321:+,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	TRUE	0	0	0	4	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	FALSE	183	104	9	328	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX22--IL4I1	3	0	SNX22	4904	chr15:64447817:+	IL4I1	9933	chr19:50432631:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	SNX22->chr15:64443914-64449680:+,sorting_nexin_22,IL4I1->chr19:50392911-50432796:-,interleukin_4_induced_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BZRAP1-AS1--HNRNPA2B1	2	0	BZRAP1-AS1	5371	chr17:56415040:+	HNRNPA2B1	25416	chr7:26230748:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	BZRAP1-AS1->BZRAP1_antisense_RNA_1,chr17:56402811-56493127:+,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-3138B18.5--TAOK3	2	0	CTD-3138B18.5	1286	chr19:58789889:-	TAOK3	40500	chr12:118590214:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	CTD-3138B18.5->chr19:58768639-58790174:-,TAOK3->TAO_kinase_3,chr12:118587606-118810750:-	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EAF2--CD47	2	0	EAF2	1209	chr3:121554238:+	CD47	13948	chr3:107799191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	EAF2->ELL_associated_factor_2,chr3:121554030-121605373:+,CD47->CD47_molecule,chr3:107762145-107809872:-	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FNBP1--IFI16	2	0	FNBP1	4269	chr9:132740744:-	IFI16	31165	chr1:158979793:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	FNBP1->Oncogene{Bushman},chr9:132649466-132805473:-,formin_binding_protein_1,IFI16->chr1:158969758-159024945:+,interferon_gamma_inducible_protein_16	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXN2--MSH2	2	0	FOXN2	1178	chr2:48541953:+	MSH2	22781	chr2:47656881:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	FOXN2->chr2:48541776-48606433:+,forkhead_box_N2,MSH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47630108-47789450:+,mutS_homolog_2	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPD1--OBFC1	2	0	HSPD1	8399	chr2:198358048:-	OBFC1	22806	chr10:105657477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	HSPD1->Oncogene{Bushman},chr2:198351305-198381461:-,heat_shock_protein_family_D_(Hsp60)_member_1,OBFC1->chr10:105642300-105677963:-,oligonucleotide/oligosaccharide_binding_fold_containing_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LHFPL2--PSMB1	2	0	LHFPL2	7033	chr5:77928087:-	PSMB1	26495	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	2	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2J3--L3MBTL3	2	0	POLR2J3	5847	chr7:102207444:-	L3MBTL3	23968	chr6:130343372:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,L3MBTL3->chr6:130334844-130462594:+,l(3)mbt-like_3_(Drosophila)	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAP1B--CXorf40A	2	0	RAP1B	1205	chr12:69004823:+	CXorf40A	20336	chrX:148623564:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+,CXorf40A->chrX:148621900-148632055:+,chromosome_X_open_reading_frame_40A	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--AIFM1	2	0	RCC1	2920	chr1:28835417:+	AIFM1	32739	chrX:129265774:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,AIFM1->Oncogene{Bushman},apoptosis_inducing_factor,_mitochondria_associated_1,chrX:129263337-129299861:-	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	FALSE	0	23	1	67	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-398K22.12--C6orf57	2	0	RP11-398K22.12	1202	chr6:73973139:+	C6orf57	17404	chr6:71289117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RP11-398K22.12->chr6:73972938-74011124:+,C6orf57->chr6:71276620-71299272:+	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	1	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--CNPPD1	2	0	RPS3	2292	chr11:75111821:+	CNPPD1	14242	chr2:220041569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SERF2--PPIP5K1	2	0	SERF2	5397	chr15:44085281:+	PPIP5K1	35490	chr15:43851130:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	SERF2->chr15:44069285-44094787:+,small_EDRK-rich_factor_2,PPIP5K1->chr15:43825660-43882430:-,diphosphoinositol_pentakisphosphate_kinase_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SWAP70--ATP8A1	2	0	SWAP70	2343	chr11:9715833:+	ATP8A1	52985	chr4:42487685:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	SWAP70->Oncogene{Bushman},SWAP_switching_B-cell_complex_70kDa_subunit,chr11:9685624-9774538:+,ATP8A1->ATPase_phospholipid_transporting_8A1,chr4:42410390-42659122:-	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAOK3--SUDS3	2	0	TAOK3	10456	chr12:118693253:-	SUDS3	51110	chr12:118848878:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	LOCAL_INVERSION:-:+:[3435],TAOK3->TAO_kinase_3,chr12:118587606-118810750:-,SUDS3->SDS3_homolog,_SIN3A_corepressor_complex_component,chr12:118814185-118855840:+	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIT1--MACF1	2	0	TRIT1	1194	chr1:40348990:-	MACF1	94912	chr1:39888046:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UTP6--LCP1	2	0	UTP6	9761	chr17:30212999:-	LCP1	36474	chr13:46730705:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	UTP6->UTP6,_small_subunit_processome_component,chr17:30187923-30228784:-,LCP1->Oncogene{Bushman},chr13:46700055-46786006:-,lymphocyte_cytosolic_protein_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF682--TP53BP1	2	0	ZNF682	5006	chr19:20133813:-	TP53BP1	26430	chr15:43762264:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	ZNF682->chr19:20107867-20150315:-,zinc_finger_protein_682,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0113	0.0113	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	477	1352	189	275	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTC9C--STX5	1	1	TTC9C	4283	chr11:62503036:+	STX5	17529	chr11:62575100:-	ONLY_REF_SPLICE	YES	66	35	0.03	0.05	0.0113	0.0113	LOCAL_INVERSION:+:-:[66604],TTC9C->chr11:62495541-62507765:+,tetratricopeptide_repeat_domain_9C,STX5->chr11:62574369-62599560:-,syntaxin_5	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.05	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000271
SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	NO	17	0	0.11	1	0.0113	0.0113	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SUDHL10_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0226	FALSE	272	151	14	158	0	FALSE	ACH-000271
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SET--NUP214	641	158	SET	8532	chr9:131456321:+	NUP214	32521	chr9:134034770:+	ONLY_REF_SPLICE	YES	282	23	0.74	0.97	10.1384	2.499	Mitelman{Skin=1,ALL=2,AML=1},chimerdb_omim:{myeloidleukemogenesis},chimerdb_pubmed{acute undifferentiated leukemia,acute myeloid leukemia},SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+,NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	0.97	12.6374	TRUE	0	0	0	1	0	TRUE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	111	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.7556	0.3954	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.151	TRUE	508	994	45	981	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	75	4	PTMA	6054	chr2:232576687:+	HMGB2	13627	chr4:174253268:-	INCL_NON_REF_SPLICE	YES	4357	1160	0.02	0.06	1.1862	0.0633	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.06	1.2495	TRUE	0	0	0	4	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	68	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0755	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0755	TRUE	0	0	0	518	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	58	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.9174	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9174	TRUE	519	3926	326	965	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	25	4	PTMA	6054	chr2:232576687:+	HMGB2	13587	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	4357	1380	0.01	0.02	0.3954	0.0633	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.4587	TRUE	0	0	0	4	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	21	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3321	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3321	TRUE	0	0	0	434	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	19	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3005	0.0158	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3163	FALSE	292	1546	117	613	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	18	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2847	0.0633	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.348	TRUE	477	1352	189	275	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-499F3.2--TYW1	17	0	RP11-499F3.2	1198	chr15:82163269:-	TYW1	23788	chr7:66648113:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2689	0	RP11-499F3.2->chr15:81952823-82163466:-,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2689	TRUE	1	3	0	7	3	TRUE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SET--NUP214	1	64	SET	8532	chr9:131456321:+	NUP214	33625	chr9:134038378:+	ONLY_REF_SPLICE	YES	282	107	0.19	0.38	0.0158	1.0123	Mitelman{Skin=1,ALL=2,AML=1},chimerdb_omim:{myeloidleukemogenesis},chimerdb_pubmed{acute undifferentiated leukemia,acute myeloid leukemia},SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+,NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.38	1.0281	TRUE	0	0	0	1	0	TRUE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	9	4	PTMA	6060	chr2:232576693:+	HMGB2	13600	chr4:174253295:-	INCL_NON_REF_SPLICE	YES	4735	1260	0	0.01	0.1423	0.0633	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.2056	TRUE	0	0	0	4	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	4	7	PTMA	6556	chr2:232577189:+	HMGB2	13573	chr4:174253322:-	INCL_NON_REF_SPLICE	YES	3986	1410	0	0.01	0.0633	0.1107	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.174	TRUE	0	0	0	4	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0791	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0791	TRUE	0	0	0	434	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	4	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1419	0	0	1	0.0633	0.0158	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0791	FALSE	13	9	0	364	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	4	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0633	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0633	TRUE	0	5	1	24	1	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	3	2	PTMA	6535	chr2:232577168:+	HMGB2	13652	chr4:174253243:-	INCL_NON_REF_SPLICE	YES	4137	969	0	0.01	0.0474	0.0316	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.079	FALSE	0	0	0	4	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1443	0	0	1	0.0474	0.0158	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0632	FALSE	13	9	0	364	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.8	0.67	0.0474	0.0158	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.8	0.0632	FALSE	515	4851	409	746	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRI3BP--UBC	3	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0474	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0474	TRUE	5	99	5	34	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--IGHV3-29	3	0	CPSF6	11046	chr12:69656342:+	IGHV3-29	20032	chr14:106787666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0474	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,IGHV3-29->chr14:106787368-106787804:-,immunoglobulin_heavy_variable_3-29_(pseudogene)	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0474	TRUE	0	0	0	3	0	TRUE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0.0474	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.079	FALSE	16	356	14	466	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	2	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0.0474	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.079	TRUE	274	363	69	150	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--CHMP1A	2	1	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	127	58	0.02	0.05	0.0316	0.0158	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.0474	TRUE	95	74	6	34	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	9	0	0.25	1	0.0316	0.0158	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0474	FALSE	164	806	69	479	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	8	0	0.27	1	0.0316	0.0158	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.0474	FALSE	125	705	46	456	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK19--SOBP	2	0	CDK19	1151	chr6:111137011:-	SOBP	28907	chr6:107854663:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	CDK19->chr6:110931181-111137161:-,cyclin-dependent_kinase_19,SOBP->chr6:107811162-107981357:+,sine_oculis_binding_protein_homolog	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCK--FIP1L1	2	0	DCK	3596	chr4:71863899:+	FIP1L1	21687	chr4:54265897:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	DCK->chr4:71858255-71896631:+,deoxycytidine_kinase,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITGA4--IGHV3-29	2	0	ITGA4	11125	chr2:182350719:+	IGHV3-29	33307	chr14:106787666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4,IGHV3-29->chr14:106787368-106787804:-,immunoglobulin_heavy_variable_3-29_(pseudogene)	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAVS--CKAP2	2	0	MAVS	1064	chr20:3827550:+	CKAP2	16225	chr13:53035193:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	MAVS->chr20:3827487-3849280:+,mitochondrial_antiviral_signaling_protein,CKAP2->chr13:53029564-53050763:+,cytoskeleton_associated_protein_2	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YIPF6--BAZ1B	2	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0316	TRUE	1	23	1	24	8	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--CSNK1D	1	1	CPSF6	11046	chr12:69656342:+	CSNK1D	27622	chr17:80211120:-	ONLY_REF_SPLICE	NO	127	202	0.02	0.01	0.0158	0.0158	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Lung=[count:3=pct:1.8],Ovary=[count:1=pct:1.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=3;pct=0.03%;dist=Lung=3},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0316	FALSE	6	4	0	4	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP2--PDS5A	1	1	G3BP2	4364	chr4:76598392:-	PDS5A	26605	chr4:39929784:-	ONLY_REF_SPLICE	YES	238	84	0.01	0.02	0.0158	0.0158	G3BP2->G3BP_stress_granule_assembly_factor_2,chr4:76567966-76649709:-,PDS5A->PDS5_cohesin_associated_factor_A,chr4:39824483-39979576:-	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED13L--CDK17	1	1	MED13L	3147	chr12:116675273:-	CDK17	51161	chr12:96694138:-	ONLY_REF_SPLICE	YES	37	33	0.05	0.06	0.0158	0.0158	GTEx&tcga_normals:1/3694=0.03%,MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,CDK17->chr12:96672039-96794338:-,cyclin-dependent_kinase_17	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.06	0.0316	TRUE	0	0	0	1	0	FALSE	ACH-000104
LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0158	0.0158	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LOUCY_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0316	FALSE	0	48	1	163	0	FALSE	ACH-000104
JHH7_LIVER	PTPLAD1--IGF2	344	23	PTPLAD1	18266	chr15:65869815:+	IGF2	32899	chr11:2153078:-	INCL_NON_REF_SPLICE	YES	466	8576	0.44	0.04	4.6403	0.3103	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0.04	0.44	4.9506	TRUE	0	0	0	4	0	TRUE	ACH-000848
JHH7_LIVER	ATXN7L3--IGF2	123	0	ATXN7L3	6307	chr17:42272175:-	IGF2	22861	chr11:2153287:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6592	0	ATXN7L3->ataxin_7_like_3,chr17:42269173-42277481:-,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	1	1	1.6592	TRUE	0	0	0	2	0	TRUE	ACH-000848
JHH7_LIVER	C16orf70--CBFB	99	34	C16orf70	12302	chr16:67178279:+	CBFB	26625	chr16:67132613:+	ONLY_REF_SPLICE	YES	38	116	0.78	0.53	1.3354	0.4586	{Klijn_CCL:Brain=1,Liver=1},LOCAL_REARRANGEMENT:+:[8900],C16orf70->chr16:67143861-67182442:+,chromosome_16_open_reading_frame_70,CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit	JHH7_LIVER	0.53	0.78	1.794	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	93	32	PTPLAD1	18266	chr15:65869815:+	IGF2	32735	chr11:2153242:-	INCL_NON_REF_SPLICE	YES	466	8241	0.21	0.01	1.2545	0.4317	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0.01	0.21	1.6862	TRUE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	TIMM23B--LINC00843	93	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.2545	0.2698	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHH7_LIVER	0.99	1	1.5243	TRUE	508	994	45	981	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	80	34	PTPLAD1	18266	chr15:65869815:+	IGF2	32690	chr11:2153287:-	INCL_NON_REF_SPLICE	YES	466	7907	0.2	0.01	1.0791	0.4586	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0.01	0.2	1.5377	TRUE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	TIMM23--RP11-464F9.1	58	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	212	3	0.23	0.95	0.7824	0.054	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JHH7_LIVER	0.23	0.95	0.8364	TRUE	519	3926	326	965	0	FALSE	ACH-000848
JHH7_LIVER	SENP6--MYO6	48	24	SENP6	16830	chr6:76380436:+	MYO6	38012	chr6:76527218:+	ONLY_REF_SPLICE	YES	24	14	0.75	0.84	0.6475	0.3237	NEIGHBORS[30912],SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+,MYO6->chr6:76458909-76629254:+,myosin_VI	JHH7_LIVER	0.75	0.84	0.9712	FALSE	0	0	0	1	0	FALSE	ACH-000848
JHH7_LIVER	ZNF654--HMGB2	52	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7014	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JHH7_LIVER	1	1	0.7014	TRUE	0	0	0	518	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	27	34	PTPLAD1	18266	chr15:65869815:+	IGF2	32673	chr11:2153304:-	INCL_NON_REF_SPLICE	NO	466	7405	0.12	0.01	0.3642	0.4586	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0.01	0.12	0.8228	FALSE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	PDE3A--SLCO1C1	32	6	PDE3A	2000	chr12:20523178:+	SLCO1C1	42795	chr12:20893118:+	ONLY_REF_SPLICE	YES	4	0	0.9	1	0.4317	0.0809	{Klijn_CCL:Liver=1},NEIGHBORS[10974],PDE3A->chr12:20522179-20837315:+,phosphodiesterase_3A,SLCO1C1->chr12:20848289-20906320:+,solute_carrier_organic_anion_transporter_family_member_1C1	JHH7_LIVER	0.9	1	0.5126	FALSE	0	0	0	1	0	FALSE	ACH-000848
JHH7_LIVER	RP11-680G10.1--GSE1	27	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	13	1	0.73	0.3642	0.1214	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHH7_LIVER	0.73	1	0.4856	TRUE	458	1351	185	561	0	FALSE	ACH-000848
JHH7_LIVER	RP11-680G10.1--GSE1	24	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	57	1	0.37	0.3237	0.1214	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHH7_LIVER	0.37	1	0.4451	TRUE	465	1949	224	605	0	FALSE	ACH-000848
JHH7_LIVER	NPM1P24--SET	23	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3103	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JHH7_LIVER	1	1	0.3103	TRUE	0	0	0	434	0	FALSE	ACH-000848
JHH7_LIVER	RP11-391M20.1--PIGL	22	3	RP11-391M20.1	2134	chr9:68728906:+	PIGL	13554	chr17:16203202:+	INCL_NON_REF_SPLICE	YES	3	28	0.89	0.47	0.2968	0.0405	RP11-391M20.1->chr9:68726629-68745997:+,PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L	JHH7_LIVER	0.47	0.89	0.3373	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	16	4	PTPLAD1	18228	chr15:65869777:+	IGF2	32742	chr11:2153235:-	INCL_NON_REF_SPLICE	YES	358	8011	0.05	0	0.2158	0.054	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.05	0.2698	TRUE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	8	34	PTPLAD1	18265	chr15:65869814:+	IGF2	32687	chr11:2153290:-	INCL_NON_REF_SPLICE	YES	476	7832	0.08	0.01	0.1079	0.4586	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0.01	0.08	0.5665	TRUE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	MT-ND6--MT-ND5	16	0	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2158	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	JHH7_LIVER	1	1	0.2158	FALSE	101	855	57	72	0	FALSE	ACH-000848
JHH7_LIVER	NRIP1--AF127936.7	14	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1889	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHH7_LIVER	1	1	0.1889	FALSE	292	1546	117	613	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	5	34	PTPLAD1	18266	chr15:65869815:+	IGF2	32656	chr11:2153321:-	INCL_NON_REF_SPLICE	NO	466	6226	0.08	0.01	0.0674	0.4586	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0.01	0.08	0.526	FALSE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	SASH1--TRDN	12	4	SASH1	2705	chr6:148664359:+	TRDN	38940	chr6:123837351:-	ONLY_REF_SPLICE	YES	12	0	0.57	1	0.1619	0.054	SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+,TRDN->chr6:123537483-123958238:-,triadin	JHH7_LIVER	0.57	1	0.2159	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	3	34	PTPLAD1	18266	chr15:65869815:+	IGF2	32654	chr11:2153323:-	INCL_NON_REF_SPLICE	NO	466	6399	0.07	0.01	0.0405	0.4586	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0.01	0.07	0.4991	FALSE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	3	34	PTPLAD1	18266	chr15:65869815:+	IGF2	32609	chr11:2153368:-	INCL_NON_REF_SPLICE	NO	466	5412	0.07	0.01	0.0405	0.4586	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0.01	0.07	0.4991	FALSE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	SPG11--MRPL52	10	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1349	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	JHH7_LIVER	1	1	0.1349	TRUE	38	11	0	19	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	8	4	PTPLAD1	18228	chr15:65869777:+	IGF2	32761	chr11:2153216:-	INCL_NON_REF_SPLICE	YES	358	7510	0.03	0	0.1079	0.054	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.03	0.1619	TRUE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	RP11-123O10.4--GRIP1	8	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1079	0.027	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHH7_LIVER	1	1	0.1349	FALSE	416	2512	207	587	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	8	1	PTPLAD1	18228	chr15:65869777:+	IGF2	33046	chr11:2152931:-	INCL_NON_REF_SPLICE	YES	358	9441	0.02	0	0.1079	0.0135	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.02	0.1214	TRUE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	8	1	PTPLAD1	18226	chr15:65869775:+	IGF2	32899	chr11:2153078:-	INCL_NON_REF_SPLICE	YES	355	8576	0.02	0	0.1079	0.0135	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.02	0.1214	TRUE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	5	13	PTPLAD1	18275	chr15:65869824:+	IGF2	33022	chr11:2152955:-	INCL_NON_REF_SPLICE	YES	474	10117	0.04	0	0.0674	0.1754	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.04	0.2428	TRUE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	MT-ND6--MT-TE	7	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0944	0.027	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH7_LIVER	1	1	0.1214	FALSE	499	1288	110	792	0	FALSE	ACH-000848
JHH7_LIVER	MTL5--CPT1A	7	2	MTL5	3534	chr11:68514676:-	CPT1A	32010	chr11:68562379:-	ONLY_REF_SPLICE	YES	36	188	0.2	0.05	0.0944	0.027	LOCAL_REARRANGEMENT:-:[3056],MTL5->chr11:68474908-68519032:-,CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-	JHH7_LIVER	0.05	0.2	0.1214	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	5	9	PTPLAD1	18248	chr15:65869797:+	IGF2	32781	chr11:2153196:-	INCL_NON_REF_SPLICE	YES	387	8530	0.03	0	0.0674	0.1214	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.03	0.1888	TRUE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	RP11-344E13.3--UBBP4	5	9	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	141	0	0.09	1	0.0674	0.1214	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	JHH7_LIVER	0.09	1	0.1888	TRUE	23	13	0	54	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	3	15	PTPLAD1	18256	chr15:65869805:+	IGF2	32949	chr11:2153028:-	INCL_NON_REF_SPLICE	YES	388	10277	0.04	0	0.0405	0.2023	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.04	0.2428	TRUE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	6	3	PTPLAD1	18228	chr15:65869777:+	IGF2	32805	chr11:2153172:-	INCL_NON_REF_SPLICE	YES	358	8746	0.02	0	0.0809	0.0405	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.02	0.1214	TRUE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	DEPDC1B--PDE4D	5	6	DEPDC1B	9902	chr5:59934577:-	PDE4D	32158	chr5:59284544:-	ONLY_REF_SPLICE	YES	45	0	0.2	1	0.0674	0.0809	{Klijn_CCL:Ovary=1},NEIGHBORS[74792],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D	JHH7_LIVER	0.2	1	0.1483	FALSE	0	0	0	2	0	FALSE	ACH-000848
JHH7_LIVER	MT-ND6--MT-TE	4	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.054	0.1214	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH7_LIVER	0.93	1	0.1754	FALSE	499	1288	110	792	0	FALSE	ACH-000848
JHH7_LIVER	C16orf70--CBFB	1	19	C16orf70	11219	chr16:67174497:+	CBFB	26625	chr16:67132613:+	ONLY_REF_SPLICE	YES	37	116	0.35	0.15	0.0135	0.2563	{Klijn_CCL:Brain=1,Liver=1},LOCAL_REARRANGEMENT:+:[8900],C16orf70->chr16:67143861-67182442:+,chromosome_16_open_reading_frame_70,CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit	JHH7_LIVER	0.15	0.35	0.2698	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	TMEM120B--CASS4	5	3	TMEM120B	1213	chr12:122150870:+	CASS4	22007	chr20:54987393:+	ONLY_REF_SPLICE	YES	21	0	0.28	1	0.0674	0.0405	TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B,CASS4->Cas_scaffolding_protein_family_member_4,chr20:54987168-55034396:+	JHH7_LIVER	0.28	1	0.1079	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	MT-ND6--MT-TE	4	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0.0809	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH7_LIVER	1	1	0.1349	FALSE	499	1288	110	792	0	FALSE	ACH-000848
JHH7_LIVER	MT-ND6--MT-ND5	5	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	JHH7_LIVER	1	1	0.0674	FALSE	101	855	57	72	0	FALSE	ACH-000848
JHH7_LIVER	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12544	chr4:174253295:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JHH7_LIVER	1	1	0.0674	TRUE	0	0	0	518	0	FALSE	ACH-000848
JHH7_LIVER	MT-ND6--MT-TE	4	3	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0.0405	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH7_LIVER	1	1	0.0945	FALSE	499	1288	110	792	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	3	7	PTPLAD1	18244	chr15:65869793:+	IGF2	32770	chr11:2153207:-	INCL_NON_REF_SPLICE	NO	377	8638	0.03	0	0.0405	0.0944	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.03	0.1349	FALSE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	4	3	PTPLAD1	18248	chr15:65869797:+	IGF2	33003	chr11:2152974:-	INCL_NON_REF_SPLICE	YES	387	10106	0.02	0	0.054	0.0405	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.02	0.0945	FALSE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	3	7	PTPLAD1	18254	chr15:65869803:+	IGF2	33003	chr11:2152974:-	INCL_NON_REF_SPLICE	YES	387	10106	0.03	0	0.0405	0.0944	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.03	0.1349	TRUE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	3	7	PTPLAD1	18252	chr15:65869801:+	IGF2	32946	chr11:2153031:-	INCL_NON_REF_SPLICE	YES	387	10059	0.03	0	0.0405	0.0944	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.03	0.1349	TRUE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	GNPNAT1--TXNDC16	4	2	GNPNAT1	1241	chr14:53258146:-	TXNDC16	15217	chr14:53011089:-	ONLY_REF_SPLICE	YES	48	34	0.11	0.15	0.054	0.027	GNPNAT1->chr14:53241912-53258386:-,glucosamine-phosphate_N-acetyltransferase_1,TXNDC16->chr14:52897308-53019240:-,thioredoxin_domain_containing_16	JHH7_LIVER	0.11	0.15	0.081	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	MGST1--RP11-424M22.3	4	2	MGST1	16905	chr12:16536538:+	RP11-424M22.3	25672	chr12:16726445:+	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.054	0.027	NEIGHBORS_OVERLAP:+:+:[6529],MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,RP11-424M22.3->chr12:16720345-16726874:+	JHH7_LIVER	0.55	1	0.081	FALSE	0	1	0	6	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	3	6	PTPLAD1	18247	chr15:65869796:+	IGF2	32888	chr11:2153089:-	INCL_NON_REF_SPLICE	YES	387	8564	0.02	0	0.0405	0.0809	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.02	0.1214	TRUE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	3	6	PTPLAD1	18248	chr15:65869797:+	IGF2	32887	chr11:2153090:-	INCL_NON_REF_SPLICE	YES	387	8509	0.02	0	0.0405	0.0809	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.02	0.1214	TRUE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	3	6	PTPLAD1	18244	chr15:65869793:+	IGF2	32804	chr11:2153173:-	INCL_NON_REF_SPLICE	NO	377	8772	0.02	0	0.0405	0.0809	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.02	0.1214	FALSE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	CDK13--LINC00265	3	5	CDK13	7958	chr7:40041630:+	LINC00265	26614	chr7:39807003:+	ONLY_REF_SPLICE	YES	25	1	0.24	0.89	0.0405	0.0674	CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,LINC00265->chr7:39773231-39832691:+,long_intergenic_non-protein_coding_RNA_265	JHH7_LIVER	0.24	0.89	0.1079	TRUE	0	0	0	2	0	TRUE	ACH-000848
JHH7_LIVER	MT-ND6--MT-ND5	4	0	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	JHH7_LIVER	1	1	0.054	FALSE	101	855	57	72	0	FALSE	ACH-000848
JHH7_LIVER	MT-ND6--MT-TE	3	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0405	0.054	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH7_LIVER	0.88	1	0.0945	FALSE	499	1288	110	792	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	4	0	PTPLAD1	18239	chr15:65869788:+	IGF2	33183	chr11:2152794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	1	1	0.054	TRUE	0	0	0	4	0	TRUE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	3	4	PTPLAD1	18227	chr15:65869776:+	IGF2	32642	chr11:2153335:-	INCL_NON_REF_SPLICE	YES	353	6188	0.02	0	0.0405	0.054	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.02	0.0945	FALSE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	RP11-444D3.1--SOX5	4	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.054	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	JHH7_LIVER	1	1	0.054	TRUE	477	1352	189	275	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	3	3	PTPLAD1	18244	chr15:65869793:+	IGF2	32968	chr11:2153009:-	INCL_NON_REF_SPLICE	NO	377	10273	0.02	0	0.0405	0.0405	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.02	0.081	FALSE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	3	3	PTPLAD1	18230	chr15:65869779:+	IGF2	32853	chr11:2153124:-	INCL_NON_REF_SPLICE	YES	365	8896	0.02	0	0.0405	0.0405	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.02	0.081	FALSE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	3	3	PTPLAD1	18230	chr15:65869779:+	IGF2	32870	chr11:2153107:-	INCL_NON_REF_SPLICE	YES	365	9022	0.02	0	0.0405	0.0405	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.02	0.081	FALSE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	MT-ND6--MT-TE	3	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0.027	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH7_LIVER	1	1	0.0675	FALSE	499	1288	110	792	0	FALSE	ACH-000848
JHH7_LIVER	PTPLAD1--IGF2	3	2	PTPLAD1	18221	chr15:65869770:+	IGF2	32842	chr11:2153135:-	INCL_NON_REF_SPLICE	YES	356	8854	0.01	0	0.0405	0.027	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	0	0.01	0.0675	FALSE	0	0	0	4	0	FALSE	ACH-000848
JHH7_LIVER	MT-CO3--MT-ATP6	3	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0405	0.0135	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	JHH7_LIVER	0.8	1	0.054	FALSE	189	492	56	216	0	FALSE	ACH-000848
JHH7_LIVER	ATXN7L3--IGF2	3	0	ATXN7L3	6317	chr17:42272165:-	IGF2	22861	chr11:2153287:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	ATXN7L3->ataxin_7_like_3,chr17:42269173-42277481:-,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	JHH7_LIVER	1	1	0.0405	TRUE	0	0	0	2	0	TRUE	ACH-000848
JHH7_LIVER	FTH1--ACTG1	3	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	JHH7_LIVER	1	1	0.0405	TRUE	0	0	0	64	0	FALSE	ACH-000848
JHH7_LIVER	KIAA1958--HSDL2	3	0	KIAA1958	3467	chr9:115337531:+	HSDL2	31434	chr9:115216293:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0405	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:+:[14437],KIAA1958->KIAA1958,chr9:115249127-115431677:+,HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2	JHH7_LIVER	1	1	0.0405	TRUE	0	0	0	2	0	TRUE	ACH-000848
JHH7_LIVER	RP11-120D5.1--MID1	2	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	27	1	0.18	0.027	0.054	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHH7_LIVER	0.18	1	0.081	FALSE	16	356	14	466	0	FALSE	ACH-000848
JHH7_LIVER	RP11-307P5.1--SASH1	2	3	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	13	1	0.28	0.027	0.0405	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	JHH7_LIVER	0.28	1	0.0675	TRUE	0	2	0	37	2	FALSE	ACH-000848
JHH7_LIVER	CLASP2--SUSD5	2	2	CLASP2	1549	chr3:33759300:-	SUSD5	64609	chr3:33255597:-	ONLY_REF_SPLICE	NO	8	0	0.33	1	0.027	0.027	CLASP2->chr3:33537737-33759848:-,cytoplasmic_linker_associated_protein_2,SUSD5->chr3:33191537-33260707:-,sushi_domain_containing_5	JHH7_LIVER	0.33	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	ECHDC1--RNF146	2	0	ECHDC1	10423	chr6:127635961:-	RNF146	20245	chr6:127601376:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=5;pct=0.06%;dist=Thyroid=2,Whole_Blood=1,Heart_-_Left_Ventricle=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[143],ECHDC1->chr6:127609855-127664754:-,ethylmalonyl-CoA_decarboxylase_1,RNF146->chr6:127587755-127609712:+,ring_finger_protein_146	JHH7_LIVER	1	1	0.027	TRUE	1	2	1	3	0	TRUE	ACH-000848
JHH7_LIVER	MTL5--CPT1A	1	4	MTL5	4717	chr11:68512459:-	CPT1A	30932	chr11:68564401:-	ONLY_REF_SPLICE	YES	16	232	0.24	0.02	0.0135	0.054	LOCAL_REARRANGEMENT:-:[3056],MTL5->chr11:68474908-68519032:-,CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-	JHH7_LIVER	0.02	0.24	0.0675	TRUE	0	0	0	1	0	FALSE	ACH-000848
JHH7_LIVER	RCC1--EIF4A1	2	0	RCC1	2175	chr1:28834672:+	EIF4A1	21291	chr17:7478437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	JHH7_LIVER	1	1	0.027	TRUE	0	0	0	2	0	TRUE	ACH-000848
JHH7_LIVER	RP11-120D5.1--MID1	1	4	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	1	27	0.83	0.16	0.0135	0.054	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHH7_LIVER	0.16	0.83	0.0675	FALSE	2	31	0	60	0	FALSE	ACH-000848
JHH7_LIVER	RP11-120D5.1--MID1	1	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	0	5	1	0.5	0.0135	0.054	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHH7_LIVER	0.5	1	0.0675	FALSE	0	23	1	67	0	FALSE	ACH-000848
JHH7_LIVER	RP11-435B5.4--CENPV	2	0	RP11-435B5.4	2843	chr1:143465380:-	CENPV	21228	chr17:16253343:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	RP11-435B5.4->chr1:143354963-143467632:-,CENPV->centromere_protein_V,chr17:16245848-16256970:-	JHH7_LIVER	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000848
JHH7_LIVER	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	JHH7_LIVER	1	1	0.027	TRUE	160	277	29	98	0	FALSE	ACH-000848
JHH7_LIVER	TULP4--RP11-732M18.3	2	0	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	JHH7_LIVER	1	1	0.027	TRUE	126	140	6	21	0	FALSE	ACH-000848
JHH7_LIVER	RP11-1L12.3--SLC5A12	1	3	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0135	0.0405	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	JHH7_LIVER	0.44	1	0.054	TRUE	3	101	0	60	0	FALSE	ACH-000848
JHH7_LIVER	GNPNAT1--TXNDC16	1	2	GNPNAT1	3448	chr14:53251215:-	TXNDC16	15217	chr14:53011089:-	ONLY_REF_SPLICE	YES	90	34	0.03	0.08	0.0135	0.027	GNPNAT1->chr14:53241912-53258386:-,glucosamine-phosphate_N-acetyltransferase_1,TXNDC16->chr14:52897308-53019240:-,thioredoxin_domain_containing_16	JHH7_LIVER	0.03	0.08	0.0405	TRUE	0	0	0	1	0	FALSE	ACH-000848
JHH7_LIVER	MTL5--CPT1A	1	2	MTL5	4717	chr11:68512459:-	CPT1A	32010	chr11:68562379:-	ONLY_REF_SPLICE	NO	16	188	0.16	0.02	0.0135	0.027	LOCAL_REARRANGEMENT:-:[3056],MTL5->chr11:68474908-68519032:-,CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-	JHH7_LIVER	0.02	0.16	0.0405	TRUE	0	0	0	1	0	FALSE	ACH-000848
JHH7_LIVER	AFP--ALB	1	1	AFP	5431	chr4:74304023:+	ALB	25109	chr4:74274311:+	ONLY_REF_SPLICE	YES	6813	6382	0	0	0.0135	0.0135	DGD_PARALOGS,PROTCLUST,LOCAL_REARRANGEMENT:+:[9726],AFP->alpha_fetoprotein,chr4:74296855-74321891:+,ALB->albumin,chr4:74262831-74287129:+	JHH7_LIVER	0	0	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000848
JHH7_LIVER	AFP--ALB	1	1	AFP	6643	chr4:74306530:+	ALB	23976	chr4:74272346:+	ONLY_REF_SPLICE	YES	7215	4601	0	0	0.0135	0.0135	DGD_PARALOGS,PROTCLUST,LOCAL_REARRANGEMENT:+:[9726],AFP->alpha_fetoprotein,chr4:74296855-74321891:+,ALB->albumin,chr4:74262831-74287129:+	JHH7_LIVER	0	0	0.027	FALSE	0	0	0	2	0	FALSE	ACH-000848
JHH7_LIVER	ATL2--HNRNPLL	1	1	ATL2	1143	chr2:38604285:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	NO	116	59	0.02	0.03	0.0135	0.0135	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	JHH7_LIVER	0.02	0.03	0.027	TRUE	1	4	0	6	0	FALSE	ACH-000848
JHH7_LIVER	CBX5--RP11-762I7.5	1	1	CBX5	1095	chr12:54673792:-	RP11-762I7.5	31696	chr12:56189860:-	ONLY_REF_SPLICE	YES	27	286	0.07	0.01	0.0135	0.0135	CBX5->chr12:54624724-54673886:-,chromobox_5,RP11-762I7.5->chr12:56151059-56221330:-	JHH7_LIVER	0.01	0.07	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000848
JHH7_LIVER	DEPDC1B--PDE4D	1	1	DEPDC1B	4088	chr5:59982789:-	PDE4D	32158	chr5:59284544:-	ONLY_REF_SPLICE	YES	52	0	0.04	1	0.0135	0.0135	{Klijn_CCL:Ovary=1},NEIGHBORS[74792],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D	JHH7_LIVER	0.04	1	0.027	FALSE	0	3	0	1	0	FALSE	ACH-000848
JHH7_LIVER	EIF4G3--HAT1	1	1	EIF4G3	46959	chr1:21143885:-	HAT1	61115	chr2:172821859:+	ONLY_REF_SPLICE	NO	67	217	0.03	0.01	0.0135	0.0135	EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3,HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1	JHH7_LIVER	0.01	0.03	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000848
JHH7_LIVER	FTX--PITHD1	1	1	FTX	9567	chrX:73494177:-	PITHD1	23124	chr1:24112165:+	ONLY_REF_SPLICE	YES	2	66	0.5	0.03	0.0135	0.0135	FTX->FTX_transcript,_XIST_regulator_(non-protein_coding),chrX:73183790-73513409:-,PITHD1->PITH_domain_containing_1,chr1:24104895-24114722:+	JHH7_LIVER	0.03	0.5	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000848
JHH7_LIVER	GATS--PILRB	1	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	24	73	0.08	0.03	0.0135	0.0135	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	JHH7_LIVER	0.03	0.08	0.027	TRUE	57	41	2	35	0	FALSE	ACH-000848
JHH7_LIVER	IGF2R--TCP1	1	1	IGF2R	25720	chr6:160483651:+	TCP1	59030	chr6:160205099:-	ONLY_REF_SPLICE	NO	194	1339	0.01	0	0.0135	0.0135	GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor,TCP1->chr6:160199530-160210781:-,t-complex_1	JHH7_LIVER	0	0.01	0.027	FALSE	0	3	0	1	0	FALSE	ACH-000848
JHH7_LIVER	MGST1--RP11-424M22.3	1	1	MGST1	11416	chr12:16520399:+	RP11-424M22.3	25672	chr12:16726445:+	ONLY_REF_SPLICE	YES	11	0	0.15	1	0.0135	0.0135	NEIGHBORS_OVERLAP:+:+:[6529],MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,RP11-424M22.3->chr12:16720345-16726874:+	JHH7_LIVER	0.15	1	0.027	FALSE	0	2	0	4	0	FALSE	ACH-000848
JHH7_LIVER	PDAP1--PRKRIP1	1	1	PDAP1	5873	chr7:98995485:-	PRKRIP1	23699	chr7:102065461:+	ONLY_REF_SPLICE	YES	779	17	0	0.11	0.0135	0.0135	PDAP1->PDGFA_associated_protein_1,chr7:98989671-99006452:-,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	JHH7_LIVER	0	0.11	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000848
JHH7_LIVER	PTBP2--DPYD	1	1	PTBP2	7311	chr1:97236407:+	DPYD	55217	chr1:97564188:-	ONLY_REF_SPLICE	YES	70	25	0.03	0.07	0.0135	0.0135	GTEx_v2:{count=1;pct=0.01%;dist=Minor_Salivary_Gland=1},PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase	JHH7_LIVER	0.03	0.07	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000848
JHH7_LIVER	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0135	0.0135	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHH7_LIVER	1	1	0.027	FALSE	93	270	15	244	0	FALSE	ACH-000848
JHH7_LIVER	SECISBP2--PSMB1	1	1	SECISBP2	2292	chr9:91934712:+	PSMB1	30406	chr6:170858201:-	ONLY_REF_SPLICE	YES	84	1070	0.02	0	0.0135	0.0135	SECISBP2->SECIS_binding_protein_2,chr9:91933421-91974557:+,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	JHH7_LIVER	0	0.02	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000848
JHH7_LIVER	SENP6--MYO6	1	1	SENP6	8431	chr6:76344527:+	MYO6	43556	chr6:76545618:+	ONLY_REF_SPLICE	YES	51	34	0.04	0.06	0.0135	0.0135	NEIGHBORS[30912],SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+,MYO6->chr6:76458909-76629254:+,myosin_VI	JHH7_LIVER	0.04	0.06	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000848
JHH7_LIVER	TAF4--PSMA7	1	1	TAF4	17661	chr20:60572606:-	PSMA7	30022	chr20:60716000:-	ONLY_REF_SPLICE	NO	81	1672	0.02	0	0.0135	0.0135	GTEx_FI:{Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},GTEx_v2:{count=3;pct=0.03%;dist=Lung=1,Liver=1,Muscle_-_Skeletal=1},{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[70925],TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	JHH7_LIVER	0	0.02	0.027	FALSE	1	3	0	4	0	FALSE	ACH-000848
JHH7_LIVER	TMEM120B--CASS4	1	1	TMEM120B	1213	chr12:122150870:+	CASS4	23165	chr20:55012220:+	ONLY_REF_SPLICE	YES	21	0	0.09	1	0.0135	0.0135	TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B,CASS4->Cas_scaffolding_protein_family_member_4,chr20:54987168-55034396:+	JHH7_LIVER	0.09	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000848
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	152	22	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	2.386	0.3453	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.7313	TRUE	361	258	24	38	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	128	82	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	60	0	0.78	1	2.0093	1.2872	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	3.2965	TRUE	0	2	1	16	2	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--ZSWIM6	143	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.2447	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.2447	TRUE	47	32	1	28	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MADD--DDB2	80	60	MADD	13933	chr11:47307141:+	DDB2	42604	chr11:47260351:+	ONLY_REF_SPLICE	YES	39	57	0.78	0.71	1.2558	0.9418	LOCAL_REARRANGEMENT:+:[29945],MADD->MAP_kinase_activating_death_domain,chr11:47290712-47351582:+,DDB2->Oncogene{Bushman},chr11:47236493-47260767:+,damage_specific_DNA_binding_protein_2	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.78	2.1976	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	49	29	ABL1	1510	chr9:133589842:+	BCR	40306	chr22:23632526:+	ONLY_REF_SPLICE	YES	0	63	1	0.55	0.7692	0.4552	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	1.2244	TRUE	0	0	0	6	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	55	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8634	0.0628	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9262	FALSE	462	80	0	856	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-344E13.3--UBBP4	26	113	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	9	0	0.94	1	0.4081	1.7738	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	2.1819	TRUE	23	13	0	54	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MADD--DDB2	40	37	MADD	13537	chr11:47306745:+	DDB2	42604	chr11:47260351:+	ONLY_REF_SPLICE	YES	78	57	0.5	0.57	0.6279	0.5808	LOCAL_REARRANGEMENT:+:[29945],MADD->MAP_kinase_activating_death_domain,chr11:47290712-47351582:+,DDB2->Oncogene{Bushman},chr11:47236493-47260767:+,damage_specific_DNA_binding_protein_2	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.57	1.2087	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	41	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6436	0.2512	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8948	TRUE	508	994	45	981	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	38	19	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	2	1	0.97	0.5965	0.2983	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.8948	TRUE	0	2	0	37	2	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ECHDC1--NKAIN2	35	10	ECHDC1	7230	chr6:127648147:-	NKAIN2	21704	chr6:124604151:+	ONLY_REF_SPLICE	YES	36	0	0.56	1	0.5494	0.157	ECHDC1->chr6:127609855-127664754:-,ethylmalonyl-CoA_decarboxylase_1,NKAIN2->Na+/K+_transporting_ATPase_interacting_2,Oncogene{Bushman},chr6:124125286-125146803:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.7064	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-338M12.9--KMT2C	22	48	CTC-338M12.9	2428	chr5:180710532:+	KMT2C	13003	chr7:151970952:-	INCL_NON_REF_SPLICE	YES	0	11	1	0.86	0.3453	0.7535	CTC-338M12.9->chr5:180708376-180710653:+,KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	1.0988	TRUE	0	0	0	3	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PTCD3	25	0	C17orf76-AS1	3754	chr17:16344889:+	PTCD3	29917	chr2:86359744:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3924	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3924	TRUE	0	0	0	4	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	24	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	173	3	0.14	0.9	0.3767	0.0471	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.9	0.4238	TRUE	519	3926	326	965	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	21	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3296	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3296	TRUE	0	0	0	518	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	16	8	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2512	0.1256	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.3768	TRUE	5	4	0	46	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LEMD3--PTPRR	16	6	LEMD3	2548	chr12:65564898:+	PTPRR	24009	chr12:71148081:-	ONLY_REF_SPLICE	YES	20	0	0.52	1	0.2512	0.0942	LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+,PTPRR->chr12:71031853-71314623:-,protein_tyrosine_phosphatase,_receptor_type_R	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	1	0.3454	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MADD--DDB2	12	18	MADD	13408	chr11:47306616:+	DDB2	42604	chr11:47260351:+	ONLY_REF_SPLICE	YES	63	57	0.32	0.34	0.1884	0.2826	LOCAL_REARRANGEMENT:+:[29945],MADD->MAP_kinase_activating_death_domain,chr11:47290712-47351582:+,DDB2->Oncogene{Bushman},chr11:47236493-47260767:+,damage_specific_DNA_binding_protein_2	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.34	0.471	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	12	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	59	1	0.18	0.1884	0.0157	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.2041	TRUE	465	1949	224	605	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND5B--SMYD4	11	4	DENND5B	7648	chr12:31632523:-	SMYD4	43181	chr17:1708009:-	ONLY_REF_SPLICE	YES	13	9	0.54	0.62	0.1727	0.0628	DENND5B->DENN_domain_containing_5B,chr12:31535157-31744031:-,SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.62	0.2355	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3225	0	0	1	0.1413	0.0157	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.157	FALSE	13	9	0	364	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3220	0	0	1	0.1413	0.0157	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.157	FALSE	13	9	0	364	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	6	12	CCDC26	6922	chr8:130365050:-	LINC00977	12110	chr8:130235615:-	INCL_NON_REF_SPLICE	YES	92	0	0.16	1	0.0942	0.1884	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.2826	TRUE	0	0	0	4	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	9	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1413	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1413	TRUE	0	0	0	100	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	8	1	EEF2	8854	chr19:3977458:-	RPS28	13630	chr19:8386413:+	INCL_NON_REF_SPLICE	YES	6798	0	0	1	0.1256	0.0157	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1413	TRUE	0	0	0	100	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1099	0.0471	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.157	FALSE	462	80	0	856	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AP000345.1	7	2	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.1099	0.0314	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.1413	TRUE	0	8	0	37	1	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAPDH--MT-ND4L	7	2	GAPDH	4973	chr12:6647089:+	MT-ND4L	8570	chrM:10618:+	INCL_NON_REF_SPLICE	YES	6255	2274	0	0	0.1099	0.0314	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1413	FALSE	0	0	0	3	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	7	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.56	0.1099	0.0314	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.1413	TRUE	458	1351	185	561	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	7	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1099	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1099	TRUE	0	5	1	24	1	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	2	18	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	0	63	1	0.24	0.0314	0.2826	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.314	TRUE	0	2	0	9	2	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0628	0.0785	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1413	FALSE	462	80	0	856	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	5	0	HSP90AB1	4399	chr6:44218222:+	MT-RNR2	11352	chrM:2225:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0785	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0785	FALSE	0	0	0	11	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP53--PCED1B-AS1	5	0	RPL23AP53	2207	chr8:180804:-	PCED1B-AS1	9973	chr12:47604520:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0785	0	RPL23AP53->chr8:163186-182231:-,ribosomal_protein_L23a_pseudogene_53,PCED1B-AS1->PCED1B_antisense_RNA_1,chr12:47599681-47610239:-	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0785	TRUE	0	0	0	3	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	4	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0628	0.0471	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	1	0.1099	FALSE	16	356	14	466	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	4	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0628	0.0314	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0942	TRUE	0	1	0	84	1	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	3	6	RP11-307P5.1	4371	chr6:148054947:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	602	2	0.01	0.82	0.0471	0.0942	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.82	0.1413	TRUE	0	0	0	11	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM211A--MT-CO3	3	5	FAM211A	8450	chr17:16344949:-	MT-CO3	11714	chrM:9412:+	INCL_NON_REF_SPLICE	YES	1	10727	0.89	0	0.0471	0.0785	FAM211A->chr17:16344891-16395467:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.89	0.1256	FALSE	0	0	0	7	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	4	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	505	0	0.01	1	0.0628	0.0157	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0785	FALSE	0	0	0	189	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	3	4	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	26	9	0.21	0.44	0.0471	0.0628	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.44	0.1099	TRUE	0	2	0	11	2	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIST1H1C--PTMA	4	0	HIST1H1C	1217	chr6:26056483:-	PTMA	6369	chr2:232573241:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0628	0	HIST1H1C->Oncogene{Bushman},chr6:26055968-26056699:-,histone_cluster_1,_H1c,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0628	TRUE	0	0	0	3	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR210HG--EGFL7	4	0	MIR210HG	1106	chr11:568352:-	EGFL7	15106	chr9:139565402:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0628	0	MIR210HG->MIR210_host_gene,chr11:565660-568457:-,EGFL7->EGF_like_domain_multiple_7,chr9:139553308-139567130:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0628	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0628	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0628	FALSE	462	80	0	856	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	2	6	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0314	0.0942	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1256	TRUE	5	12	0	42	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	2	5	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	YES	1	1	0.88	0.88	0.0314	0.0785	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.88	0.1099	TRUE	1	1	0	17	1	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-6N13.1--CTD-2374C24.1	2	5	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	20885	chr5:104311586:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0314	0.0785	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.1099	TRUE	1	2	0	8	1	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2251F13.1--PRKD1	3	0	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0471	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0471	TRUE	0	3	0	8	3	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	2	3	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	27	2	0.16	0.71	0.0314	0.0471	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.71	0.0785	TRUE	0	0	0	16	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TEX41--ARHGAP15	2	1	TEX41	4396	chr2:145448677:+	ARHGAP15	70132	chr2:144381702:+	ONLY_REF_SPLICE	YES	25	53	0.11	0.05	0.0314	0.0157	TEX41->chr2:145425534-145940216:+,testis_expressed_41_(non-protein_coding),ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.11	0.0471	TRUE	0	0	0	1	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C12orf44--DDX46	2	0	C12orf44	2238	chr12:52464267:+	DDX46	23830	chr5:134126160:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	C12orf44->chr12:52463030-52471278:+,DDX46->DEAD-box_helicase_46,chr5:134094469-134190823:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PTCD3	2	0	C17orf76-AS1	1593	chr17:16342728:+	PTCD3	33495	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	3	0	8	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--BAGE2	2	0	CPSF6	11046	chr12:69656342:+	BAGE2	24376	chr21:11058323:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	1	0	2	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1549--PABPC1	2	0	KIAA1549	14118	chr7:138579088:-	PABPC1	38276	chr8:101730116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	KIAA1549->KIAA1549,Oncogene{Bushman},chr7:138516126-138666064:-,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MRPS36--MSH3	2	0	MRPS36	1112	chr5:68513698:+	MSH3	31973	chr5:80149949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	MRPS36->chr5:68513587-68525956:+,mitochondrial_ribosomal_protein_S36,MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PXMP2--TANGO6	2	0	PXMP2	2662	chr12:133266962:+	TANGO6	39259	chr16:69117388:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	PXMP2->chr12:133264192-133297276:+,peroxisomal_membrane_protein_2,TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	FALSE	46	201	11	112	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFR--ZNF609	2	0	ZFR	11931	chr5:32395265:-	ZNF609	33177	chr15:64915026:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	ZFR->chr5:32354456-32444867:-,zinc_finger_RNA_binding_protein,ZNF609->chr15:64752941-64978264:+,zinc_finger_protein_609	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LEMD3--PTPRR	1	3	LEMD3	2548	chr12:65564898:+	PTPRR	25120	chr12:71139866:-	ONLY_REF_SPLICE	YES	20	1	0.17	0.8	0.0157	0.0471	LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+,PTPRR->chr12:71031853-71314623:-,protein_tyrosine_phosphatase,_receptor_type_R	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.8	0.0628	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf26--MESDC2	1	2	C15orf26	8938	chr15:81436161:+	MESDC2	15557	chr15:81274523:-	ONLY_REF_SPLICE	YES	68	124	0.04	0.02	0.0157	0.0314	LOCAL_INVERSION:+:-:[17155],C15orf26->chr15:81299374-81441516:+,MESDC2->chr15:81239667-81282219:-,mesoderm_development_candidate_2	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0471	TRUE	0	0	0	1	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-307P5.1--SASH1	1	2	RP11-307P5.1	6659	chr6:148268655:+	SASH1	19267	chr6:148795246:+	ONLY_REF_SPLICE	YES	0	10	1	0.23	0.0157	0.0314	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.0471	TRUE	0	0	0	1	0	TRUE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	1	1	ABL1	1510	chr9:133589842:+	BCR	48463	chr22:23651611:+	ONLY_REF_SPLICE	YES	0	83	1	0.02	0.0157	0.0157	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0314	TRUE	0	1	0	5	1	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf26--MESDC2	1	1	C15orf26	2213	chr15:81391862:+	MESDC2	15557	chr15:81274523:-	ONLY_REF_SPLICE	NO	84	124	0.02	0.02	0.0157	0.0157	LOCAL_INVERSION:+:-:[17155],C15orf26->chr15:81299374-81441516:+,MESDC2->chr15:81239667-81282219:-,mesoderm_development_candidate_2	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.0314	TRUE	0	0	0	1	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NQO2--LINC00478	1	1	NQO2	9651	chr6:3006793:+	LINC00478	34041	chr21:17966660:+	ONLY_REF_SPLICE	YES	401	95	0	0.02	0.0157	0.0157	NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+,LINC00478->chr21:17442842-17999716:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0314	FALSE	0	0	0	1	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--PPP6R2	1	1	OAZ1	1259	chr19:2269743:+	PPP6R2	23324	chr22:50873395:+	ONLY_REF_SPLICE	YES	2308	121	0	0.02	0.0157	0.0157	GTEx_FI:{Blood=[count:2=pct:1.1],Lung=[count:1=pct:0.6],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=6;pct=0.07%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Artery_-_Tibial=1,Lung=1,Whole_Blood=1,Colon_-_Sigmoid=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,PPP6R2->chr22:50781733-50883514:+,protein_phosphatase_6_regulatory_subunit_2	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0314	FALSE	6	1	0	7	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--MED16	1	1	PPP1R12C	8950	chr19:55610152:-	MED16	28043	chr19:877180:-	ONLY_REF_SPLICE	YES	102	213	0.02	0.01	0.0157	0.0157	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,MED16->chr19:867962-893218:-,mediator_complex_subunit_16	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0314	FALSE	0	0	0	1	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-634B7.4--TRIM58	1	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	13	0.67	0.13	0.0157	0.0157	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.67	0.0314	TRUE	158	633	76	73	0	FALSE	ACH-000604
KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.0157	0.0157	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0314	FALSE	272	151	14	158	0	FALSE	ACH-000604
NB1_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	94	38	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9694	0.3919	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NB1_AUTONOMIC_GANGLIA	1	1	1.3613	TRUE	508	994	45	981	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	PPM1G--HSD17B14	90	40	PPM1G	1385	chr2:27632170:-	HSD17B14	16393	chr19:49318398:-	ONLY_REF_SPLICE	YES	434	1	0.23	0.99	0.9282	0.4125	PPM1G->chr2:27604061-27632554:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1G,HSD17B14->chr19:49316274-49339935:-,hydroxysteroid_(17-beta)_dehydrogenase_14	NB1_AUTONOMIC_GANGLIA	0.23	0.99	1.3407	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	51	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	701	1	0.07	0.98	0.526	0.0516	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NB1_AUTONOMIC_GANGLIA	0.07	0.98	0.5776	TRUE	519	3926	326	965	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	ZNF654--HMGB2	52	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5363	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NB1_AUTONOMIC_GANGLIA	1	1	0.5363	TRUE	0	0	0	518	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-TA--MT-TC	42	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4332	0.0825	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NB1_AUTONOMIC_GANGLIA	1	1	0.5157	FALSE	462	80	0	856	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	PLXDC1--TAF13	39	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4022	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NB1_AUTONOMIC_GANGLIA	1	1	0.4022	TRUE	7	10	0	216	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	31	13	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3197	0.1341	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NB1_AUTONOMIC_GANGLIA	1	1	0.4538	TRUE	477	1352	189	275	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	SOS1--SLC12A1	15	25	SOS1	19865	chr2:39233553:-	SLC12A1	43521	chr15:48518673:+	ONLY_REF_SPLICE	YES	45	0	0.47	1	0.1547	0.2578	SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-,SLC12A1->chr15:48483861-48596275:+,solute_carrier_family_12_member_1	NB1_AUTONOMIC_GANGLIA	0.47	1	0.4125	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	DPH7--PTP4A3	18	0	DPH7	1297	chr9:140473091:-	PTP4A3	14726	chr8:142431487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1856	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:10=pct:2.7],Heart=[count:7=pct:2.8],Pituitary=[count:4=pct:7.7],Nerve=[count:2=pct:1.2],Esophagus=[count:2=pct:0.5],Colon=[count:2=pct:1.0],Lung=[count:2=pct:1.2],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Kidney=[count:1=pct:7.1],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},GTEx_v2:{count=46;pct=0.53%;dist=Artery_-_Tibial=9,Heart_-_Atrial_Appendage=9,Pituitary=6,Cells_-_EBV-transformed_lymphocytes=5,Artery_-_Aorta=3,Lung=2,Artery_-_Coronary=2,Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hypothalamus=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1,Testis=1},DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7,PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3	NB1_AUTONOMIC_GANGLIA	1	1	0.1856	TRUE	29	213	5	17	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	DPYSL5--MT-CO3	18	0	DPYSL5	17409	chr2:27170936:+	MT-CO3	22898	chrM:9412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1856	0	DPYSL5->chr2:27070615-27173219:+,dihydropyrimidinase_like_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NB1_AUTONOMIC_GANGLIA	1	1	0.1856	FALSE	0	0	0	1	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	NPM1P24--SET	17	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1753	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NB1_AUTONOMIC_GANGLIA	1	1	0.1753	TRUE	0	0	0	434	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	RP11-408A13.2--NFIB	14	9	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	101	1	0.19	0.1444	0.0928	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	NB1_AUTONOMIC_GANGLIA	0.19	1	0.2372	TRUE	0	14	0	20	14	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	16	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.63	0.165	0.0103	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NB1_AUTONOMIC_GANGLIA	0.63	1	0.1753	TRUE	458	1351	185	561	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	15	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1547	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	1	1	0.1547	FALSE	230	193	14	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	HSPBP1--GRK5	14	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1444	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NB1_AUTONOMIC_GANGLIA	1	1	0.1444	TRUE	1	39	0	134	39	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MYCN--GPN1	14	0	MYCN	3087	chr2:16082976:+	GPN1	21486	chr2:27872982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1444	0	MYCN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:16080686-16087129:+,v-myc_avian_myelocytomatosis_viral_oncogene_neuroblastoma_derived_homolog,GPN1->GPN-loop_GTPase_1,chr2:27851114-27874375:+	NB1_AUTONOMIC_GANGLIA	1	1	0.1444	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	RBKS--MYCNUN	13	1	RBKS	11730	chr2:28050434:-	MYCNUN	20202	chr2:16075896:+	ONLY_REF_SPLICE	YES	98	1	0.12	0.93	0.1341	0.0103	RBKS->chr2:28004231-28113965:-,ribokinase,MYCNUN->chr2:16060521-16076139:+	NB1_AUTONOMIC_GANGLIA	0.12	0.93	0.1444	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	BRE--CLIP4	9	16	BRE	5581	chr2:28152775:+	CLIP4	34403	chr2:29366575:+	ONLY_REF_SPLICE	YES	94	28	0.21	0.47	0.0928	0.165	BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+,CLIP4->CAP-Gly_domain_containing_linker_protein_family_member_4,chr2:29320571-29412509:+	NB1_AUTONOMIC_GANGLIA	0.21	0.47	0.2578	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	TSHZ2--RP5-955M13.4	8	10	TSHZ2	1927	chr20:51589872:+	RP5-955M13.4	20693	chr20:49617047:+	ONLY_REF_SPLICE	YES	18	0	0.5	1	0.0825	0.1031	TSHZ2->chr20:51588946-52111869:+,teashirt_zinc_finger_homeobox_2,RP5-955M13.4->chr20:49615907-49626556:+	NB1_AUTONOMIC_GANGLIA	0.5	1	0.1856	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	9	5	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2623	79	0.01	0.15	0.0928	0.0516	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	0.01	0.15	0.1444	FALSE	216	209	16	281	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	8	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18597	79	0	0.14	0.0825	0.0516	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	0	0.14	0.1341	FALSE	231	217	16	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	9	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0928	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	1	1	0.0928	FALSE	230	198	14	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	SOS1--SLC12A1	7	7	SOS1	19865	chr2:39233553:-	SLC12A1	44124	chr15:48519276:+	ONLY_REF_SPLICE	YES	45	10	0.24	0.58	0.0722	0.0722	SOS1->SOS_Ras/Rac_guanine_nucleotide_exchange_factor_1,chr2:39208537-39351486:-,SLC12A1->chr15:48483861-48596275:+,solute_carrier_family_12_member_1	NB1_AUTONOMIC_GANGLIA	0.24	0.58	0.1444	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	YPEL5--MYCN	8	1	YPEL5	1122	chr2:30369928:+	MYCN	13582	chr2:16085615:+	ONLY_REF_SPLICE	YES	165	469	0.05	0.02	0.0825	0.0103	YPEL5->chr2:30369807-30383399:+,yippee_like_5,MYCN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:16080686-16087129:+,v-myc_avian_myelocytomatosis_viral_oncogene_neuroblastoma_derived_homolog	NB1_AUTONOMIC_GANGLIA	0.02	0.05	0.0928	TRUE	0	0	0	1	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	5	10	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0516	0.1031	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NB1_AUTONOMIC_GANGLIA	1	1	0.1547	TRUE	274	363	69	150	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	7	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	59	1	0.12	0.0722	0.0103	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NB1_AUTONOMIC_GANGLIA	0.12	1	0.0825	TRUE	465	1949	224	605	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	5	5	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16515	79	0	0.11	0.0516	0.0516	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	0	0.11	0.1032	FALSE	231	217	16	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	EIF1--RPS28	6	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NB1_AUTONOMIC_GANGLIA	1	1	0.0619	TRUE	0	0	0	81	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	5	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	19762	0	0	1	0.0516	0.0413	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	0	1	0.0929	FALSE	231	217	16	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	4	8	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18691	0	0	1	0.0413	0.0825	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	0	1	0.1238	FALSE	231	217	16	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	5	3	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	19667	0	0	1	0.0516	0.0309	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	0	1	0.0825	FALSE	231	217	16	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-TA--MT-TC	4	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0.0722	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NB1_AUTONOMIC_GANGLIA	1	1	0.1135	FALSE	462	80	0	856	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	4	5	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19147	9	0	0.5	0.0413	0.0516	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	0	0.5	0.0929	FALSE	231	217	16	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	4	5	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	16515	219	0	0.04	0.0413	0.0516	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	0	0.04	0.0929	FALSE	231	217	16	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	9	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	18718	0	0	1	0.0309	0.0928	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	0	1	0.1237	FALSE	231	217	16	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	C15orf57--CBX3	4	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	120	20	0.06	0.29	0.0413	0.0413	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NB1_AUTONOMIC_GANGLIA	0.06	0.29	0.0826	TRUE	267	562	48	632	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	5	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	1	1	0.0516	FALSE	230	193	14	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-TA--MT-TC	3	8	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0.0825	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NB1_AUTONOMIC_GANGLIA	1	1	0.1134	FALSE	462	80	0	856	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NB1_AUTONOMIC_GANGLIA	1	1	0.0516	FALSE	462	80	0	856	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	4	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.4	1	0.0413	0.0413	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NB1_AUTONOMIC_GANGLIA	0.4	1	0.0826	FALSE	125	705	46	456	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	STX18-AS1--MSX1	5	0	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0516	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	NB1_AUTONOMIC_GANGLIA	1	1	0.0516	TRUE	37	101	7	40	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	4	2	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	19687	1625	0	0	0.0413	0.0206	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	0	0	0.0619	FALSE	231	205	14	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	5	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	22424	219	0	0.04	0.0309	0.0516	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	0	0.04	0.0825	FALSE	231	217	16	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0413	0.0103	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NB1_AUTONOMIC_GANGLIA	0.83	1	0.0516	FALSE	292	1546	117	613	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	ATP6V0C--MT-CO2	4	0	ATP6V0C	2886	chr16:2569357:+	MT-CO2	6967	chrM:7804:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0	ATP6V0C->ATPase_H+_transporting_V0_subunit_c,chr16:2563871-2570219:+,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NB1_AUTONOMIC_GANGLIA	1	1	0.0413	FALSE	0	0	0	9	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	LBH--GAPDH	4	0	LBH	6627	chr2:30481181:+	GAPDH	13144	chr12:6643684:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0	LBH->chr2:30454397-30546596:+,limb_bud_and_heart_development,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	NB1_AUTONOMIC_GANGLIA	1	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	4	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	19723	0	0	1	0.0309	0.0413	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	0	1	0.0722	FALSE	231	217	16	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	1	12	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	23	0	0.36	1	0.0103	0.1238	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NB1_AUTONOMIC_GANGLIA	0.36	1	0.1341	FALSE	164	806	69	479	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	3	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	20613	0	0	1	0.0309	0.0309	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	0	1	0.0618	FALSE	231	217	16	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	3	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	20428	0	0	1	0.0309	0.0309	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	0	1	0.0618	FALSE	231	217	16	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	SLC1A5--MT-ND4L	3	3	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	790	0	0.01	1	0.0309	0.0309	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NB1_AUTONOMIC_GANGLIA	0.01	1	0.0618	FALSE	0	0	0	189	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	AGBL4--BEND5	3	1	AGBL4	2274	chr1:50317068:-	BEND5	28501	chr1:49227142:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0.0103	NEIGHBORS_OVERLAP:-:-:[49446],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	NB1_AUTONOMIC_GANGLIA	1	1	0.0412	FALSE	0	0	0	2	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	CPSF6--C9orf3	3	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	384	513	0.01	0.01	0.0309	0.0103	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	NB1_AUTONOMIC_GANGLIA	0.01	0.01	0.0412	FALSE	53	99	2	44	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	RP11-123O10.4--GRIP1	3	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0309	0.0103	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NB1_AUTONOMIC_GANGLIA	0.8	1	0.0412	FALSE	416	2512	207	587	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	YWHAE--CRK	3	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	4380	130	0	0.03	0.0309	0.0103	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NB1_AUTONOMIC_GANGLIA	0	0.03	0.0412	FALSE	6	50	7	115	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	EIF1--RPL5	3	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	NB1_AUTONOMIC_GANGLIA	1	1	0.0309	TRUE	0	0	0	39	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	HSPBP1--GRK5	3	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NB1_AUTONOMIC_GANGLIA	1	1	0.0309	TRUE	1	39	0	134	39	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	HSPBP1--GRK5	3	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NB1_AUTONOMIC_GANGLIA	1	1	0.0309	TRUE	1	39	0	134	39	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	0	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	1	1	0.0309	FALSE	231	204	14	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	0	MT-ND4	1262	chrM:11021:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	1	1	0.0309	FALSE	231	205	14	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	0	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	1	1	0.0309	FALSE	231	205	14	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	1	1	0.0309	FALSE	231	204	14	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	0	MT-ND4	1112	chrM:10871:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	1	1	0.0309	FALSE	230	193	14	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MT-ND4--MT-ATP8	3	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NB1_AUTONOMIC_GANGLIA	1	1	0.0309	FALSE	231	205	14	283	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	SFXN2--TRIM8	3	0	SFXN2	1144	chr10:104474438:+	TRIM8	26125	chr10:104414410:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[56131],SFXN2->chr10:104474295-104503249:+,sideroflexin_2,TRIM8->chr10:104404253-104418164:+,tripartite_motif_containing_8	NB1_AUTONOMIC_GANGLIA	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	SCARB1--DHX37	2	1	SCARB1	4931	chr12:125348141:-	DHX37	29205	chr12:125470811:-	ONLY_REF_SPLICE	YES	57	167	0.05	0.02	0.0206	0.0103	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[64157],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,DHX37->DEAH-box_helicase_37,chr12:125431371-125473668:-	NB1_AUTONOMIC_GANGLIA	0.02	0.05	0.0309	TRUE	0	0	0	1	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	ASCC3--CD2AP	2	0	ASCC3	1312	chr6:101328937:-	CD2AP	54524	chr6:47501338:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ASCC3->activating_signal_cointegrator_1_complex_subunit_3,chr6:100956070-101329248:-,CD2AP->CD2-associated_protein,chr6:47445525-47594999:+	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	CTD-2281E23.2--DLGAP2	2	0	CTD-2281E23.2	3418	chr8:1208883:+	DLGAP2	8510	chr8:1449532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GTEx_FI:{Testis=[count:34=pct:32.4],Brain=[count:24=pct:3.6],Pituitary=[count:4=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Thyroid=[count:2=pct:1.1]},CTD-2281E23.2->chr8:1054882-1212580:+,DLGAP2->chr8:1449532-1656642:+,discs_large_homolog_associated_protein_2	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	49	61	1	13	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	IARS--PITPNC1	2	0	IARS	1146	chr9:95055893:-	PITPNC1	43492	chr17:65528918:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase,PITPNC1->chr17:65373575-65693372:+,phosphatidylinositol_transfer_protein,_cytoplasmic_1	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	LMNB2--SF3A2	2	0	LMNB2	2464	chr19:2444402:-	SF3A2	20877	chr19:2245445:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	LMNB2->chr19:2427636-2456994:-,lamin_B2,SF3A2->chr19:2236520-2248678:+,splicing_factor_3a_subunit_2	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	MARK3--DHX16	2	0	MARK3	5432	chr14:103894777:+	DHX16	40698	chr6:30624869:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3,DHX16->DEAH-box_helicase_16,chr6:30620896-30640814:-	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	OAZ1--MEX3D	2	0	OAZ1	1259	chr19:2269743:+	MEX3D	9599	chr19:1556922:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,MEX3D->chr19:1554668-1568057:-,mex-3_RNA_binding_family_member_D	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	RARA--TOP2B	2	0	RARA	10854	chr17:38504716:+	TOP2B	22338	chr3:25686961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,TOP2B->Oncogene{Bushman},chr3:25639475-25706398:-,topoisomerase_(DNA)_II_beta	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	RP11-440L14.1--PTAFR	2	0	RP11-440L14.1	1078	chr4:775560:-	PTAFR	11388	chr1:28477570:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	RP11-440L14.1->chr4:756175-775637:-,PTAFR->chr1:28473677-28520447:-,platelet_activating_factor_receptor	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	1	4	RP11-444D3.1	1258	chr12:24715267:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	11	0	0.31	1	0.0103	0.0413	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NB1_AUTONOMIC_GANGLIA	0.31	1	0.0516	TRUE	0	1	1	7	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	SDCBP--CNPPD1	2	0	SDCBP	4943	chr8:59477625:+	CNPPD1	18605	chr2:220041569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	SDCBP->chr8:59465483-59495419:+,syndecan_binding_protein,CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	FALSE	272	151	14	158	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	ZFAS1--KCTD10	2	0	ZFAS1	2031	chr20:47895745:+	KCTD10	14297	chr12:109898610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,KCTD10->chr12:109886461-109915349:-,potassium_channel_tetramerization_domain_containing_10	NB1_AUTONOMIC_GANGLIA	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	AC074363.1--B3GALT1	1	3	AC074363.1	2265	chr2:168346787:+	B3GALT1	6463	chr2:168675182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0103	0.0309	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	NB1_AUTONOMIC_GANGLIA	1	1	0.0412	TRUE	0	4	2	6	4	TRUE	ACH-000804
NB1_AUTONOMIC_GANGLIA	SCARB1--DHX37	1	2	SCARB1	6049	chr12:125346926:-	DHX37	29205	chr12:125470811:-	ONLY_REF_SPLICE	NO	73	167	0.04	0.02	0.0103	0.0206	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[64157],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,DHX37->DEAH-box_helicase_37,chr12:125431371-125473668:-	NB1_AUTONOMIC_GANGLIA	0.02	0.04	0.0309	TRUE	0	0	0	1	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	C11orf73--PICALM	1	1	C11orf73	3558	chr11:86017524:+	PICALM	14527	chr11:85742653:-	ONLY_REF_SPLICE	YES	331	395	0.01	0.01	0.0103	0.0103	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1},C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	NB1_AUTONOMIC_GANGLIA	0.01	0.01	0.0206	FALSE	1	2	0	10	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	CS--PTGES3	1	1	CS	2648	chr12:56692393:-	PTGES3	19869	chr12:57066849:-	ONLY_REF_SPLICE	YES	1115	3837	0	0	0.0103	0.0103	CS->chr12:56665483-56694176:-,citrate_synthase,PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3	NB1_AUTONOMIC_GANGLIA	0	0	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	GMPS--TIMMDC1	1	1	GMPS	14257	chr3:155643155:+	TIMMDC1	34692	chr3:119242453:+	ONLY_REF_SPLICE	YES	290	282	0.01	0.01	0.0103	0.0103	GMPS->Oncogene{Bushman},chr3:155588325-155661815:+,guanine_monophosphate_synthase,TIMMDC1->chr3:119217379-119243937:+,translocase_of_inner_mitochondrial_membrane_domain_containing_1	NB1_AUTONOMIC_GANGLIA	0.01	0.01	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	HS2ST1--SEP15	1	1	HS2ST1	1513	chr1:87380843:+	SEP15	26013	chr1:87369131:-	ONLY_REF_SPLICE	YES	222	200	0.01	0.01	0.0103	0.0103	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	NB1_AUTONOMIC_GANGLIA	0.01	0.01	0.0206	FALSE	0	2	0	9	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	JAZF1--SET	1	1	JAZF1	8277	chr7:27934839:-	SET	22793	chr9:131453449:+	ONLY_REF_SPLICE	YES	250	675	0.01	0	0.0103	0.0103	JAZF1->JAZF_zinc_finger_1,Oncogene{Bushman},chr7:27870192-28220362:-,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NB1_AUTONOMIC_GANGLIA	0	0.01	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	LHFPL2--SKP1	1	1	LHFPL2	12046	chr5:77860636:-	SKP1	26928	chr5:133509713:-	ONLY_REF_SPLICE	YES	94	814	0.02	0	0.0103	0.0103	GTEx&tcga_normals:1/3694=0.03%,LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-	NB1_AUTONOMIC_GANGLIA	0	0.02	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	LRRFIP2--AMMECR1	1	1	LRRFIP2	4142	chr3:37216030:-	AMMECR1	47723	chrX:109507827:-	ONLY_REF_SPLICE	NO	58	145	0.03	0.01	0.0103	0.0103	LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2,AMMECR1->Alport_syndrome,_mental_retardation,_midface_hypoplasia_and_elliptocytosis_chromosomal_region_gene_1,chrX:109437414-109683461:-	NB1_AUTONOMIC_GANGLIA	0.01	0.03	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000804
NB1_AUTONOMIC_GANGLIA	TPR--FBXL5	1	1	TPR	30592	chr1:186304470:-	FBXL5	60713	chr4:15632414:-	ONLY_REF_SPLICE	YES	395	100	0.01	0.02	0.0103	0.0103	TPR->Oncogene{Bushman},chr1:186280784-186344825:-,translocated_promoter_region,_nuclear_basket_protein,FBXL5->F-box_and_leucine-rich_repeat_protein_5,chr4:15606162-15683302:-	NB1_AUTONOMIC_GANGLIA	0.01	0.02	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000804
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CECR7--AC008132.1	154	37	CECR7	1775	chr22:17518234:+	AC008132.1	13601	chr22:18723545:+	ONLY_REF_SPLICE	YES	1	0	0.99	1	1.6993	0.4083	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	2.1076	TRUE	0	0	0	5	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	138	55	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.5227	0.6069	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	2.1296	TRUE	508	994	45	981	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM179B--TAF6L	110	135	TMEM179B	1113	chr11:62554999:+	TAF6L	14219	chr11:62553732:+	ONLY_REF_SPLICE	YES	189	51	0.56	0.83	1.2138	1.4896	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:+:[73],TMEM179B->chr11:62554887-62557877:+,transmembrane_protein_179B,TAF6L->TATA-box_binding_protein_associated_factor_6_like,chr11:62538775-62554814:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	0.83	2.7034	TRUE	0	1	0	1	1	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-727F15.12--TMEM223	88	57	RP11-727F15.12	1526	chr11:62553732:-	TMEM223	8210	chr11:62554999:-	INCL_NON_REF_SPLICE	YES	15	10	0.91	0.94	0.971	0.629	NEIGHBORS_OVERLAP:-:-:[759],RP11-727F15.12->chr11:62553498-62554257:-,TMEM223->chr11:62539101-62559493:-,transmembrane_protein_223	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.94	1.6	FALSE	0	0	0	1	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	73	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	205	13	0.28	0.86	0.8055	0.0662	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.86	0.8717	TRUE	519	3926	326	965	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	46	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5076	0.0552	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5628	FALSE	462	80	0	856	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-312O7.2--C1orf147	34	9	RP11-312O7.2	2914	chr1:206135293:-	C1orf147	7050	chr1:206666409:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3752	0.0993	RP11-312O7.2->chr1:206135293-206137984:-,C1orf147->chr1:206664449-206671061:-,chromosome_1_open_reading_frame_147	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4745	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAF3--DAB1	25	4	TRAF3	1200	chr14:103244012:+	DAB1	38837	chr1:57756838:-	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.2759	0.0441	TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+,DAB1->DAB1,_reelin_adaptor_protein,chr1:57460451-59012406:-	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.32	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CECR7--AC008132.1	16	24	CECR7	1775	chr22:17518234:+	AC008132.1	15153	chr22:18727043:+	ONLY_REF_SPLICE	YES	1	2	0.98	0.95	0.1766	0.2648	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	0.98	0.4414	TRUE	0	0	0	5	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	22	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2428	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2428	FALSE	499	1288	110	792	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	14	16	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	7	1	0.81	0.97	0.1545	0.1766	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.97	0.3311	FALSE	515	4851	409	746	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CECR7--AC008132.1	12	15	CECR7	1775	chr22:17518234:+	AC008132.1	16240	chr22:18732023:+	ONLY_REF_SPLICE	YES	1	28	0.96	0.49	0.1324	0.1655	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.96	0.2979	TRUE	0	0	0	5	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf194--UQCR10	14	3	C1orf194	3284	chr1:109650635:-	UQCR10	8361	chr22:30163372:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1545	0.0331	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.41%,GTEx_FI:{Testis=[count:16=pct:15.2],Pituitary=[count:4=pct:7.7],Lung=[count:4=pct:2.4],Brain=[count:3=pct:0.5],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Fallopian_Tube=[count:1=pct:16.7],Thyroid=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=13;pct=0.15%;dist=Testis=12,Adipose_-_Subcutaneous=1},C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1876	TRUE	26	6	0	14	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.1434	0.0331	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1765	FALSE	499	1288	110	792	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1324	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1324	TRUE	46	1352	75	139	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	10	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1103	0.0552	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1655	FALSE	462	80	0	856	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	6	20	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	1	0.9	0.96	0.0662	0.2207	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.96	0.2869	FALSE	467	2173	244	435	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAF--RP11-679B19.2	10	3	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1103	0.0331	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1434	TRUE	48	25	3	38	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ELK2AP	9	6	PVT1	18060	chr8:129022690:+	ELK2AP	28829	chr14:106139274:-	INCL_NON_REF_SPLICE	YES	6	11	0.71	0.58	0.0993	0.0662	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ELK2AP->ELK2A,_member_of_ETS_oncogene_family,_pseudogene,Oncogene{Bushman},chr14:106138645-106139651:-	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	0.71	0.1655	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	10	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	2778	0	0	1	0.1103	0.011	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1213	TRUE	0	0	0	100	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWC2--TENM3	9	1	WWC2	1330	chr4:184020775:+	TENM3	65932	chr4:183694625:+	ONLY_REF_SPLICE	YES	3	39	0.77	0.2	0.0993	0.011	WWC2->WW_and_C2_domain_containing_2,chr4:184020446-184241930:+,TENM3->chr4:183065140-183724177:+,teneurin_transmembrane_protein_3	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.77	0.1103	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0993	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0993	FALSE	499	1288	110	792	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	20	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	7	0	0.77	1	0.0441	0.2207	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.2648	FALSE	275	511	55	178	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSPC1--VDR	5	11	PSPC1	1617	chr13:20356526:-	VDR	23933	chr12:48258960:-	ONLY_REF_SPLICE	YES	1	3	0.94	0.84	0.0552	0.1214	PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	0.94	0.1766	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	21	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	1	0.88	0.96	0.0221	0.2317	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.96	0.2538	FALSE	192	492	57	212	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0772	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0772	FALSE	462	80	0	856	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	6	3	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	21	0	0.3	1	0.0662	0.0331	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.0993	FALSE	272	151	14	158	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	5	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0552	0.011	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0662	FALSE	416	2512	207	587	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	5	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0552	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0552	FALSE	1	11	0	34	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	5	0	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0552	TRUE	13	49	2	38	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLX4--CREBBP	4	4	SLX4	12797	chr16:3642700:-	CREBBP	27148	chr16:3860780:-	ONLY_REF_SPLICE	YES	22	66	0.27	0.11	0.0441	0.0441	SLX4->SLX4_structure-specific_endonuclease_subunit,chr16:3631182-3661599:-,CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.27	0.0882	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MCM9--MAN1A1	4	1	MCM9	17266	chr6:119177534:-	MAN1A1	40571	chr6:119515057:-	ONLY_REF_SPLICE	YES	8	133	0.38	0.04	0.0441	0.011	MCM9->chr6:119134605-119256327:-,minichromosome_maintenance_9_homologous_recombination_repair_factor,MAN1A1->chr6:119498374-119670926:-,mannosidase_alpha_class_1A_member_1	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.38	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBX4--IGL@	4	0	CBX4	4733	chr17:77808355:-	IGL@	68640	chr22:23237716:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	CBX4->Oncogene{Bushman},chr17:77806955-77813228:-,chromobox_4,IGL@->Oncogene{Bushman}	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0441	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0441	FALSE	499	1288	110	792	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL3--HLA-B	4	0	RPL3	3831	chr22:39713564:-	HLA-B	11661	chr6:31324663:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	GTEx&tcga_normals:1/3694=0.03%,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3,HLA-B->chr6:31321649-31324965:-,major_histocompatibility_complex,_class_I,_B	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0441	FALSE	0	0	0	1	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0.0331	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0662	FALSE	499	1288	110	792	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACOXL--AC108463.1	3	2	ACOXL	19382	chr2:111753581:+	AC108463.1	33339	chr2:111963782:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0331	0.0221	NEIGHBORS[77741],ACOXL->acyl-CoA_oxidase-like,chr2:111490150-111875799:+,AC108463.1->chr2:111953540-111964071:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0552	FALSE	0	0	0	1	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	5813	14820	0	0	0.0331	0.011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0441	FALSE	183	104	9	328	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	1	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	1	2	0.8	0.67	0.0331	0.011	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.8	0.0441	FALSE	0	9	0	55	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	2	0.8	0.67	0.0331	0.011	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.8	0.0441	FALSE	16	356	14	466	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC136297.1--MT-RNR2	3	0	AC136297.1	1196	chr11:1296004:+	MT-RNR2	4238	chrM:1683:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0331	0	AC136297.1->chr11:1295809-1296033:+,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0331	FALSE	2	0	0	1	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HADHB--RAB10	2	1	HADHB	3875	chr2:26477342:+	RAB10	23223	chr2:26321531:+	ONLY_REF_SPLICE	YES	431	204	0.01	0.01	0.0221	0.011	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Esophagus_-_Mucosa=1},HADHB->chr2:26466038-26513336:+,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_beta_subunit,RAB10->RAB10,_member_RAS_oncogene_family,chr2:26256976-26360323:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0331	FALSE	0	0	0	1	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	1	5	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.011	0.0552	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0662	FALSE	46	201	11	112	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLTC--EP400	2	0	CLTC	3805	chr17:57725027:+	EP400	67899	chr12:132516498:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,EP400->E1A_binding_protein_p400,Oncogene{Bushman},chr12:132434508-132565005:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SBF2--SLC38A6	2	0	SBF2	16405	chr11:10011044:-	SLC38A6	85573	chr14:61545528:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	SBF2->SET_binding_factor_2,chr11:9800214-10315754:-,SLC38A6->chr14:61447832-61550451:+,solute_carrier_family_38_member_6	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD12--VAPA	1	1	ANKRD12	11771	chr18:9221997:+	VAPA	36164	chr18:9931807:+	ONLY_REF_SPLICE	NO	61	510	0.03	0	0.011	0.011	GTEx&tcga_normals:1/3694=0.03%,ANKRD12->ankyrin_repeat_domain_12,chr18:9136226-9285983:+,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.022	FALSE	0	0	0	3	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FARS2--RP3-380B8.4	1	1	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	YES	38	0	0.05	1	0.011	0.011	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.022	FALSE	27	82	4	18	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGFR2--COL14A1	1	1	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	1	1	0.67	0.67	0.011	0.011	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.67	0.022	TRUE	0	0	0	32	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	1	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	10165	chr5:97006298:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.011	0.011	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000204
LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	NO	21	2	0.09	0.5	0.011	0.011	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	LP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.5	0.022	FALSE	28	14	1	23	0	FALSE	ACH-000204
MCF7_BREAST	BCAS4--BCAS3	3102	3230	BCAS4	1280	chr20:49411710:+	BCAS3	58366	chr17:59445688:+	ONLY_REF_SPLICE	YES	250	197	0.96	0.97	35.0409	36.4868	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	MCF7_BREAST	0.96	0.97	71.5277	TRUE	0	1	1	3	0	TRUE	ACH-000019
MCF7_BREAST	BCAS4--BCAS3	54	3297	BCAS4	1280	chr20:49411710:+	BCAS3	54817	chr17:59430949:+	ONLY_REF_SPLICE	YES	250	154	0.93	0.96	0.61	37.2436	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	MCF7_BREAST	0.93	0.96	37.8536	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	BCAS4--BCAS3	36	3247	BCAS4	1280	chr20:49411710:+	BCAS3	55591	chr17:59431723:+	ONLY_REF_SPLICE	YES	250	216	0.93	0.94	0.4067	36.6788	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	MCF7_BREAST	0.93	0.94	37.0855	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	BCAS4--BCAS3	3	3301	BCAS4	1280	chr20:49411710:+	BCAS3	53611	chr17:59322527:+	INCL_NON_REF_SPLICE	YES	250	150	0.93	0.96	0.0339	37.2888	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	MCF7_BREAST	0.93	0.96	37.3227	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	ARFGEF2--SULF2	752	190	ARFGEF2	1121	chr20:47538547:+	SULF2	47936	chr20:46365686:-	ONLY_REF_SPLICE	YES	28	1093	0.97	0.46	8.4948	2.1463	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Breast=1},ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	MCF7_BREAST	0.46	0.97	10.6411	TRUE	0	0	1	2	0	TRUE	ACH-000019
MCF7_BREAST	RPS6KB1--VMP1	370	314	RPS6KB1	7326	chr17:57992064:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	1299	1538	0.34	0.31	4.1796	3.547	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.31	0.34	7.7266	TRUE	0	4	1	7	3	TRUE	ACH-000019
MCF7_BREAST	BCAS4--BCAS3	4	1417	BCAS4	1280	chr20:49411710:+	BCAS3	62210	chr17:59457867:+	ONLY_REF_SPLICE	YES	250	1481	0.85	0.49	0.0452	16.0067	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	MCF7_BREAST	0.49	0.85	16.0519	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	BCAS4--BCAS3	29	1192	BCAS4	1280	chr20:49411710:+	BCAS3	66978	chr17:59469338:+	ONLY_REF_SPLICE	YES	250	1538	0.83	0.44	0.3276	13.4651	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	MCF7_BREAST	0.44	0.83	13.7927	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	BCAS4--BCAS3	2	1273	BCAS4	1280	chr20:49411710:+	BCAS3	63619	chr17:59465979:+	ONLY_REF_SPLICE	YES	250	1537	0.84	0.45	0.0226	14.3801	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	MCF7_BREAST	0.45	0.84	14.4027	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RPS6KB1--VMP1	208	244	RPS6KB1	4306	chr17:57987972:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	1502	1429	0.23	0.24	2.3496	2.7563	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.23	0.24	5.1059	TRUE	0	2	1	6	1	TRUE	ACH-000019
MCF7_BREAST	TANC2--CA4	184	65	TANC2	2143	chr17:61151375:+	CA4	52881	chr17:58232675:+	ONLY_REF_SPLICE	YES	45	0	0.85	1	2.0785	0.7343	{Klijn_CCL:Breast=1},TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,CA4->carbonic_anhydrase_4,chr17:58227297-58248260:+	MCF7_BREAST	0.85	1	2.8128	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	GCN1L1--MSI1	153	60	GCN1L1	2134	chr12:120628101:-	MSI1	58313	chr12:120785317:-	ONLY_REF_SPLICE	YES	180	2	0.54	0.99	1.7283	0.6778	{Klijn_CCL:Breast=1},GCN1L1->chr12:120565007-120632513:-,MSI1->chr12:120779133-120806983:-,musashi_RNA_binding_protein_1	MCF7_BREAST	0.54	0.99	2.4061	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	PAPOLA--AK7	149	42	PAPOLA	2168	chr14:96968937:+	AK7	40553	chr14:96904172:+	ONLY_REF_SPLICE	YES	200	1	0.49	0.99	1.6831	0.4744	LOCAL_REARRANGEMENT:+:[12006],PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	MCF7_BREAST	0.49	0.99	2.1575	TRUE	0	0	0	3	0	TRUE	ACH-000019
MCF7_BREAST	TXLNG--SYAP1	126	94	TXLNG	1163	chrX:16804712:+	SYAP1	18729	chrX:16753350:+	ONLY_REF_SPLICE	YES	36	593	0.86	0.27	1.4233	1.0618	LOCAL_REARRANGEMENT:+:[21091],TXLNG->chrX:16804550-16862642:+,taxilin_gamma,SYAP1->chrX:16737755-16783459:+,synapse_associated_protein_1	MCF7_BREAST	0.27	0.86	2.4851	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	POP1--MATN2	129	1	POP1	1094	chr8:99129618:+	MATN2	42063	chr8:99042690:+	ONLY_REF_SPLICE	YES	0	24	1	0.84	1.4572	0.0113	LOCAL_REARRANGEMENT:+:[80581],POP1->POP1_homolog,_ribonuclease_P/MRP_subunit,chr8:99129525-99172062:+,MATN2->chr8:98881068-99048944:+,matrilin_2	MCF7_BREAST	0.84	1	1.4685	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RPS6KB1--DIAPH3	100	77	RPS6KB1	9551	chr17:58007535:+	DIAPH3	56314	chr13:60240980:-	ONLY_REF_SPLICE	YES	921	33	0.16	0.84	1.1296	0.8698	RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3	MCF7_BREAST	0.16	0.84	1.9994	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RPS6KB1--VMP1	1	434	RPS6KB1	7326	chr17:57992064:+	VMP1	37383	chr17:57895073:+	ONLY_REF_SPLICE	YES	1299	732	0.25	0.37	0.0113	4.9026	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.25	0.37	4.9139	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	TIMM23B--LINC00843	91	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.028	0.3389	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MCF7_BREAST	1	1	1.3669	TRUE	508	994	45	981	0	FALSE	ACH-000019
MCF7_BREAST	SMARCA4--CARM1	79	72	SMARCA4	9164	chr19:11097269:+	CARM1	48111	chr19:11015627:+	ONLY_REF_SPLICE	YES	179	96	0.46	0.61	0.8924	0.8133	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[38145],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	MCF7_BREAST	0.46	0.61	1.7057	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	DEPDC1B--ELOVL7	75	78	DEPDC1B	9902	chr5:59934577:-	ELOVL7	32689	chr5:60053472:-	ONLY_REF_SPLICE	YES	80	13	0.66	0.92	0.8472	0.8811	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[51601],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,ELOVL7->ELOVL_fatty_acid_elongase_7,chr5:60047618-60140216:-	MCF7_BREAST	0.66	0.92	1.7283	TRUE	0	0	1	2	0	TRUE	ACH-000019
MCF7_BREAST	RPS6KB1--VMP1	1	347	RPS6KB1	5427	chr17:57990165:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	1620	1429	0.18	0.2	0.0113	3.9198	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.18	0.2	3.9311	TRUE	0	5	0	6	5	TRUE	ACH-000019
MCF7_BREAST	ADAMTS19--SLC27A6	66	60	ADAMTS19	1218	chr5:128796175:+	SLC27A6	44345	chr5:128364038:+	ONLY_REF_SPLICE	YES	30	1	0.81	0.99	0.7456	0.6778	ADAMTS19->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_19,chr5:128795958-129074376:+,SLC27A6->chr5:127873706-128369335:+,solute_carrier_family_27_member_6	MCF7_BREAST	0.81	0.99	1.4234	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	ARFGEF2--SULF2	32	191	ARFGEF2	1125	chr20:47538551:+	SULF2	47936	chr20:46365686:-	INCL_NON_REF_SPLICE	YES	33	1093	0.87	0.17	0.3615	2.1576	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Breast=1},ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	MCF7_BREAST	0.17	0.87	2.5191	TRUE	0	0	1	2	0	TRUE	ACH-000019
MCF7_BREAST	AC099850.1--VMP1	58	66	AC099850.1	1994	chr17:57184952:+	VMP1	21543	chr17:57915656:+	ONLY_REF_SPLICE	YES	159	1429	0.44	0.08	0.6552	0.7456	AC099850.1->chr17:57183959-57195628:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.08	0.44	1.4008	TRUE	0	1	1	2	1	TRUE	ACH-000019
MCF7_BREAST	ATXN7L3--FAM171A2	67	12	ATXN7L3	3094	chr17:42275388:-	FAM171A2	15777	chr17:42433956:-	ONLY_REF_SPLICE	YES	43	6	0.65	0.93	0.7568	0.1356	ATXN7L3->ataxin_7_like_3,chr17:42269173-42277481:-,FAM171A2->chr17:42430583-42441243:-,family_with_sequence_similarity_171_member_A2	MCF7_BREAST	0.65	0.93	0.8924	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RPS6KB1--VMP1	12	227	RPS6KB1	5427	chr17:57990165:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	1620	1538	0.13	0.13	0.1356	2.5642	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.13	0.13	2.6998	TRUE	0	1	0	3	0	TRUE	ACH-000019
MCF7_BREAST	ADAMTS19--SLC27A6	39	86	ADAMTS19	2493	chr5:128797450:+	SLC27A6	44345	chr5:128364038:+	ONLY_REF_SPLICE	YES	49	1	0.72	0.99	0.4406	0.9715	ADAMTS19->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_19,chr5:128795958-129074376:+,SLC27A6->chr5:127873706-128369335:+,solute_carrier_family_27_member_6	MCF7_BREAST	0.72	0.99	1.4121	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	GCN1L1--MSI1	38	64	GCN1L1	2134	chr12:120628101:-	MSI1	57256	chr12:120789203:-	ONLY_REF_SPLICE	YES	180	3	0.36	0.97	0.4293	0.723	{Klijn_CCL:Breast=1},GCN1L1->chr12:120565007-120632513:-,MSI1->chr12:120779133-120806983:-,musashi_RNA_binding_protein_1	MCF7_BREAST	0.36	0.97	1.1523	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	MYO9B--FCHO1	38	55	MYO9B	2996	chr19:17213367:+	FCHO1	54568	chr19:17881234:+	ONLY_REF_SPLICE	YES	30	1	0.76	0.99	0.4293	0.6213	{Klijn_CCL:Breast=1},MYO9B->chr19:17186591-17325346:+,myosin_IXB,FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+	MCF7_BREAST	0.76	0.99	1.0506	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	TIMM23--RP11-464F9.1	50	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	412	19	0.11	0.73	0.5648	0.0113	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MCF7_BREAST	0.11	0.73	0.5761	TRUE	519	3926	326	965	0	FALSE	ACH-000019
MCF7_BREAST	RSBN1--AP4B1-AS1	44	24	RSBN1	1767	chr1:114354332:-	AP4B1-AS1	20221	chr1:114442494:+	ONLY_REF_SPLICE	YES	42	19	0.62	0.78	0.497	0.2711	LOCAL_INVERSION:-:+:[44159],RSBN1->chr1:114304454-114355098:-,round_spermatid_basic_protein_1,AP4B1-AS1->AP4B1_antisense_RNA_1,chr1:114399257-114443859:+	MCF7_BREAST	0.62	0.78	0.7681	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	AHCYL1--RAD51C	42	6	AHCYL1	1487	chr1:110527794:+	RAD51C	32162	chr17:56811479:+	ONLY_REF_SPLICE	YES	148	308	0.24	0.13	0.4744	0.0678	{Klijn_CCL:Breast=1},AHCYL1->adenosylhomocysteinase_like_1,chr1:110527308-110566357:+,RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+	MCF7_BREAST	0.13	0.24	0.5422	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	SMARCC1--EMCN	39	15	SMARCC1	5204	chr3:47779519:-	EMCN	43214	chr4:101491482:-	ONLY_REF_SPLICE	YES	88	1	0.38	0.98	0.4406	0.1694	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,EMCN->chr4:101316498-101801283:-,endomucin	MCF7_BREAST	0.38	0.98	0.61	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	TAF4--BRIP1	34	24	TAF4	2360	chr20:60639507:-	BRIP1	33209	chr17:59926617:-	ONLY_REF_SPLICE	YES	50	505	0.54	0.1	0.3841	0.2711	{Klijn_CCL:Breast=1},TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-	MCF7_BREAST	0.1	0.54	0.6552	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	MT-TA--MT-TC	36	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4067	0.0113	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MCF7_BREAST	1	1	0.418	FALSE	462	80	0	856	0	FALSE	ACH-000019
MCF7_BREAST	MYO6--SENP6	27	35	MYO6	1232	chr6:76459140:+	SENP6	64441	chr6:76388299:+	ONLY_REF_SPLICE	YES	225	93	0.22	0.4	0.305	0.3954	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[30912],MYO6->chr6:76458909-76629254:+,myosin_VI,SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+	MCF7_BREAST	0.22	0.4	0.7004	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	ABCA5--PPP4R1L	30	21	ABCA5	7553	chr17:67309233:-	PPP4R1L	52141	chr20:56847931:-	ONLY_REF_SPLICE	YES	37	40	0.58	0.56	0.3389	0.2372	ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-,PPP4R1L->chr20:56806188-56884495:-,protein_phosphatase_4_regulatory_subunit_1_like_(pseudogene)	MCF7_BREAST	0.56	0.58	0.5761	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	BCAS4--ZMYND8	30	18	BCAS4	1280	chr20:49411710:+	ZMYND8	41369	chr20:45850125:-	ONLY_REF_SPLICE	YES	250	251	0.16	0.16	0.3389	0.2033	BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8	MCF7_BREAST	0.16	0.16	0.5422	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	TBL1XR1--RGS17	33	5	TBL1XR1	1353	chr3:176914909:-	RGS17	34360	chr6:153365178:-	ONLY_REF_SPLICE	YES	6	0	0.86	1	0.3728	0.0565	chimerdb_pubmed{Breast carcinoma,breast cancer},TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RGS17->chr6:153325594-153452384:-,regulator_of_G-protein_signaling_17	MCF7_BREAST	0.86	1	0.4293	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	MYH9--EIF3D	28	22	MYH9	1212	chr22:36783852:-	EIF3D	47062	chr22:36922178:-	ONLY_REF_SPLICE	YES	372	60	0.12	0.45	0.3163	0.2485	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D	MCF7_BREAST	0.12	0.45	0.5648	TRUE	0	1	0	2	1	TRUE	ACH-000019
MCF7_BREAST	SULF2--PRICKLE2	30	13	SULF2	2274	chr20:46414087:-	PRICKLE2	40949	chr3:64085601:-	ONLY_REF_SPLICE	YES	252	2	0.15	0.96	0.3389	0.1469	SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	MCF7_BREAST	0.15	0.96	0.4858	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	ARFGEF2--SULF2	4	106	ARFGEF2	1069	chr20:47538495:+	SULF2	47936	chr20:46365686:-	INCL_NON_REF_SPLICE	YES	34	1093	0.76	0.09	0.0452	1.1974	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Breast=1},ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2	MCF7_BREAST	0.09	0.76	1.2426	TRUE	0	0	1	2	0	TRUE	ACH-000019
MCF7_BREAST	USP32--APPBP2	23	30	USP32	7346	chr17:58378960:-	APPBP2	59151	chr17:58538148:-	ONLY_REF_SPLICE	YES	834	1091	0.06	0.05	0.2598	0.3389	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],LOCAL_REARRANGEMENT:-:[20689],USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-	MCF7_BREAST	0.05	0.06	0.5987	TRUE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	AC099850.1--VMP1	17	48	AC099850.1	1909	chr17:57184867:+	VMP1	21543	chr17:57915656:+	INCL_NON_REF_SPLICE	YES	207	1429	0.24	0.04	0.192	0.5422	AC099850.1->chr17:57183959-57195628:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.04	0.24	0.7342	TRUE	0	1	1	2	1	TRUE	ACH-000019
MCF7_BREAST	ATP1A1--ZFP64	24	20	ATP1A1	16095	chr1:116939356:+	ZFP64	48550	chr20:50668671:-	ONLY_REF_SPLICE	YES	997	0	0.04	1	0.2711	0.2259	ATP1A1->ATPase_Na+/K+_transporting_subunit_alpha_1,chr1:116915290-116952883:+,ZFP64->Oncogene{Bushman},ZFP64_zinc_finger_protein,chr20:50668202-50820847:-	MCF7_BREAST	0.04	1	0.497	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	NAV1--GPR37L1	21	30	NAV1	8867	chr1:201709204:+	GPR37L1	49629	chr1:202096869:+	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.2372	0.3389	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,GPR37L1->G_protein-coupled_receptor_37_like_1,chr1:202091986-202102720:+	MCF7_BREAST	0.98	1	0.5761	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ND4L	3	99	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	33	0	0.76	1	0.0339	1.1183	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MCF7_BREAST	0.76	1	1.1522	FALSE	344	826	44	306	0	FALSE	ACH-000019
MCF7_BREAST	EIF3H--RAD21	22	19	EIF3H	7051	chr8:117738255:-	RAD21	24431	chr8:117879000:-	ONLY_REF_SPLICE	YES	2812	106	0.01	0.28	0.2485	0.2146	LOCAL_REARRANGEMENT:-:[79010],EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-	MCF7_BREAST	0.01	0.28	0.4631	TRUE	0	0	0	7	0	FALSE	ACH-000019
MCF7_BREAST	AC099850.1--VMP1	8	67	AC099850.1	1994	chr17:57184952:+	VMP1	19837	chr17:57911373:+	ONLY_REF_SPLICE	YES	159	843	0.32	0.08	0.0904	0.7568	AC099850.1->chr17:57183959-57195628:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.08	0.32	0.8472	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	GATAD2B--NUP210L	21	13	GATAD2B	1243	chr1:153895209:-	NUP210L	47435	chr1:154000073:-	ONLY_REF_SPLICE	YES	6	19	0.85	0.64	0.2372	0.1469	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	MCF7_BREAST	0.64	0.85	0.3841	TRUE	0	1	0	2	1	TRUE	ACH-000019
MCF7_BREAST	RP11-96H19.1--RP11-446N19.1	19	20	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.2146	0.2259	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MCF7_BREAST	0.97	1	0.4405	FALSE	515	4851	409	746	0	FALSE	ACH-000019
MCF7_BREAST	TAF4--BRIP1	18	21	TAF4	2360	chr20:60639507:-	BRIP1	34337	chr17:59924581:-	ONLY_REF_SPLICE	YES	50	397	0.44	0.09	0.2033	0.2372	{Klijn_CCL:Breast=1},TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-	MCF7_BREAST	0.09	0.44	0.4405	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	ZNF654--HMGB2	23	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2598	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MCF7_BREAST	1	1	0.2598	TRUE	0	0	0	518	0	FALSE	ACH-000019
MCF7_BREAST	RPS6KB1--DIAPH3	3	79	RPS6KB1	9809	chr17:58007793:+	DIAPH3	56314	chr13:60240980:-	ONLY_REF_SPLICE	YES	944	33	0.08	0.71	0.0339	0.8924	RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3	MCF7_BREAST	0.08	0.71	0.9263	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	PDE8A--SCAND2P	21	6	PDE8A	2621	chr15:85525579:+	SCAND2P	36611	chr15:85180578:+	ONLY_REF_SPLICE	YES	21	8	0.56	0.77	0.2372	0.0678	PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A,SCAND2P->SCAN_domain_containing_2_pseudogene,chr15:85174682-85185695:+	MCF7_BREAST	0.56	0.77	0.305	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	SULF2--PRICKLE2	19	12	SULF2	1569	chr20:46414792:-	PRICKLE2	40949	chr3:64085601:-	ONLY_REF_SPLICE	YES	245	2	0.11	0.94	0.2146	0.1356	SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	MCF7_BREAST	0.11	0.94	0.3502	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ND4L	6	63	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	7	0	0.91	1	0.0678	0.7117	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MCF7_BREAST	0.91	1	0.7795	FALSE	344	821	44	306	0	FALSE	ACH-000019
MCF7_BREAST	C10orf112--PLXDC2	18	14	C10orf112	32754	chr10:20079115:+	PLXDC2	37923	chr10:20290704:+	INCL_NON_REF_SPLICE	YES	2	48	0.94	0.4	0.2033	0.1581	NEIGHBORS[25838],C10orf112->chr10:19492779-20079330:+,PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2	MCF7_BREAST	0.4	0.94	0.3614	FALSE	73	74	3	10	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	21	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2372	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	1	1	0.2372	FALSE	230	193	14	283	0	FALSE	ACH-000019
MCF7_BREAST	TTC6--RP11-356O9.1	20	4	TTC6	1162	chr14:38065213:+	RP11-356O9.1	55376	chr14:38033424:+	INCL_NON_REF_SPLICE	YES	5	1	0.83	0.96	0.2259	0.0452	LOCAL_REARRANGEMENT:+:[16722],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,RP11-356O9.1->chr14:38033252-38048330:+	MCF7_BREAST	0.83	0.96	0.2711	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	ESR1--CCDC170	15	22	ESR1	3373	chr6:152023140:+	CCDC170	38747	chr6:151894309:+	ONLY_REF_SPLICE	YES	8	33	0.82	0.53	0.1694	0.2485	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	MCF7_BREAST	0.53	0.82	0.4179	TRUE	0	1	0	3	1	TRUE	ACH-000019
MCF7_BREAST	RP11-15E18.1--LPPR5	15	21	RP11-15E18.1	1209	chr17:58603862:+	LPPR5	8643	chr1:99470179:-	INCL_NON_REF_SPLICE	YES	14	0	0.72	1	0.1694	0.2372	RP11-15E18.1->chr17:58603654-58628159:+,LPPR5->chr1:99355806-99470588:-	MCF7_BREAST	0.72	1	0.4066	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RP11-680G10.1--GSE1	19	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	106	1	0.18	0.2146	0.0565	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MCF7_BREAST	0.18	1	0.2711	TRUE	465	1949	224	605	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ND4L	4	60	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	181	0	0.26	1	0.0452	0.6778	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MCF7_BREAST	0.26	1	0.723	FALSE	344	827	44	306	0	FALSE	ACH-000019
MCF7_BREAST	RP11-141M1.3--STARD13	14	16	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	4	20	0.88	0.6	0.1581	0.1807	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	MCF7_BREAST	0.6	0.88	0.3388	FALSE	141	264	50	91	0	FALSE	ACH-000019
MCF7_BREAST	HIPK1--DENND2C	17	2	HIPK1	6780	chr1:114484081:+	DENND2C	39477	chr1:115161103:-	ONLY_REF_SPLICE	YES	253	1	0.07	0.95	0.192	0.0226	HIPK1->chr1:114471814-114520426:+,homeodomain_interacting_protein_kinase_1,DENND2C->DENN_domain_containing_2C,chr1:115125469-115213043:-	MCF7_BREAST	0.07	0.95	0.2146	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	MT-ATP6--MT-CO1	17	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	10275	28785	0	0	0.192	0.0226	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCF7_BREAST	0	0	0.2146	FALSE	183	104	9	328	0	FALSE	ACH-000019
MCF7_BREAST	AC099850.1--VMP1	4	48	AC099850.1	1909	chr17:57184867:+	VMP1	19837	chr17:57911373:+	INCL_NON_REF_SPLICE	YES	207	843	0.2	0.06	0.0452	0.5422	AC099850.1->chr17:57183959-57195628:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.06	0.2	0.5874	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	OR51S1--TP53I11	16	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1807	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	MCF7_BREAST	1	1	0.1807	TRUE	402	216	10	229	0	FALSE	ACH-000019
MCF7_BREAST	TANC2--CA4	2	53	TANC2	2143	chr17:61151375:+	CA4	53935	chr17:58233921:+	ONLY_REF_SPLICE	YES	45	1	0.55	0.98	0.0226	0.5987	{Klijn_CCL:Breast=1},TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,CA4->carbonic_anhydrase_4,chr17:58227297-58248260:+	MCF7_BREAST	0.55	0.98	0.6213	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	UBE2E2--RP11-20B7.1	14	4	UBE2E2	3680	chr3:23258803:+	RP11-20B7.1	15371	chr3:73918927:+	ONLY_REF_SPLICE	YES	51	0	0.26	1	0.1581	0.0452	UBE2E2->chr3:23244511-23633284:+,ubiquitin_conjugating_enzyme_E2_E2,RP11-20B7.1->chr3:73857752-73952017:+	MCF7_BREAST	0.26	1	0.2033	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	GATAD2B--NUP210L	11	14	GATAD2B	1243	chr1:153895209:-	NUP210L	46276	chr1:154002530:-	ONLY_REF_SPLICE	YES	6	0	0.81	1	0.1243	0.1581	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	MCF7_BREAST	0.81	1	0.2824	TRUE	0	0	0	3	0	TRUE	ACH-000019
MCF7_BREAST	PLCG1--TOP1	13	3	PLCG1	1899	chr20:39766498:+	TOP1	35225	chr20:39729878:+	INCL_NON_REF_SPLICE	YES	35	573	0.31	0.03	0.1469	0.0339	LOCAL_REARRANGEMENT:+:[12473],PLCG1->chr20:39765600-39811629:+,phospholipase_C_gamma_1,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	MCF7_BREAST	0.03	0.31	0.1808	TRUE	0	0	0	3	0	FALSE	ACH-000019
MCF7_BREAST	RSBN1--AP4B1-AS1	7	26	RSBN1	1767	chr1:114354332:-	AP4B1-AS1	19099	chr1:114440490:+	ONLY_REF_SPLICE	YES	42	0	0.44	1	0.0791	0.2937	LOCAL_INVERSION:-:+:[44159],RSBN1->chr1:114304454-114355098:-,round_spermatid_basic_protein_1,AP4B1-AS1->AP4B1_antisense_RNA_1,chr1:114399257-114443859:+	MCF7_BREAST	0.44	1	0.3728	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	NPM1P24--SET	12	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	38	1812	0.25	0.01	0.1356	0.0113	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MCF7_BREAST	0.01	0.25	0.1469	TRUE	0	0	0	434	0	FALSE	ACH-000019
MCF7_BREAST	RP11-123O10.4--GRIP1	11	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1243	0.0565	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MCF7_BREAST	1	1	0.1808	FALSE	416	2512	207	587	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	12	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1356	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	1	1	0.1356	FALSE	230	198	14	283	0	FALSE	ACH-000019
MCF7_BREAST	HSP90AB1--MT-RNR2	11	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3683	0	0	1	0.1243	0.0226	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MCF7_BREAST	0	1	0.1469	FALSE	13	9	0	364	0	FALSE	ACH-000019
MCF7_BREAST	MYO9B--FCHO1	1	42	MYO9B	2996	chr19:17213367:+	FCHO1	54607	chr19:17881273:+	ONLY_REF_SPLICE	YES	30	1	0.59	0.98	0.0113	0.4744	{Klijn_CCL:Breast=1},MYO9B->chr19:17186591-17325346:+,myosin_IXB,FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+	MCF7_BREAST	0.59	0.98	0.4857	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	AC099850.1--VMP1	5	25	AC099850.1	1733	chr17:57184691:+	VMP1	21543	chr17:57915656:+	INCL_NON_REF_SPLICE	YES	350	1429	0.08	0.02	0.0565	0.2824	AC099850.1->chr17:57183959-57195628:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MCF7_BREAST	0.02	0.08	0.3389	TRUE	0	1	1	2	1	FALSE	ACH-000019
MCF7_BREAST	ANKS1A--UHRF1BP1	11	1	ANKS1A	1335	chr6:34857376:+	UHRF1BP1	33692	chr6:34801994:+	ONLY_REF_SPLICE	YES	0	38	1	0.24	0.1243	0.0113	LOCAL_REARRANGEMENT:+:[6127],ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+,UHRF1BP1->UHRF1_binding_protein_1,chr6:34759857-34850915:+	MCF7_BREAST	0.24	1	0.1356	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RAD51C--ATXN7	7	16	RAD51C	11155	chr17:56801461:+	ATXN7	25577	chr3:63965591:+	ONLY_REF_SPLICE	YES	435	32	0.05	0.42	0.0791	0.1807	RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+,ATXN7->ataxin_7,chr3:63850233-63989138:+	MCF7_BREAST	0.05	0.42	0.2598	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	MT-ATP6--MT-CO1	10	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12536	28413	0	0	0.113	0.0339	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCF7_BREAST	0	0	0.1469	FALSE	183	104	9	328	0	FALSE	ACH-000019
MCF7_BREAST	ZBTB25--RP11-973N13.2	10	3	ZBTB25	9041	chr14:64952683:-	RP11-973N13.2	22770	chr14:65067081:-	INCL_NON_REF_SPLICE	YES	34	0	0.28	1	0.113	0.0339	LOCAL_REARRANGEMENT:-:[95030],ZBTB25->chr14:64915824-64971931:-,zinc_finger_and_BTB_domain_containing_25,RP11-973N13.2->chr14:65066961-65068362:-	MCF7_BREAST	0.28	1	0.1469	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	BCAS4--BCAS3	5	22	BCAS4	1192	chr20:49411622:+	BCAS3	58427	chr17:59445749:+	INCL_NON_REF_SPLICE	YES	8	188	0.77	0.13	0.0565	0.2485	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,chimerdb_pubmed{MCF7,HCT116},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	MCF7_BREAST	0.13	0.77	0.305	TRUE	0	1	1	3	0	TRUE	ACH-000019
MCF7_BREAST	HSP90AB1--MT-RNR2	10	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3709	0	0	1	0.113	0.0226	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MCF7_BREAST	0	1	0.1356	FALSE	13	9	0	364	0	FALSE	ACH-000019
MCF7_BREAST	RP11-96H19.1--RP11-446N19.1	5	21	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	1	0.96	0.96	0.0565	0.2372	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MCF7_BREAST	0.96	0.96	0.2937	FALSE	407	2205	196	549	0	FALSE	ACH-000019
MCF7_BREAST	RP11-141M1.3--STARD13	6	16	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	20	0.92	0.52	0.0678	0.1807	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	MCF7_BREAST	0.52	0.92	0.2485	FALSE	49	120	16	70	0	FALSE	ACH-000019
MCF7_BREAST	LEMD3--RP1-74B13.2	7	11	LEMD3	5721	chr12:65612399:+	RP1-74B13.2	18520	chr12:111283403:+	ONLY_REF_SPLICE	YES	72	1	0.2	0.95	0.0791	0.1243	LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+,RP1-74B13.2->chr12:111269583-111283767:+	MCF7_BREAST	0.2	0.95	0.2034	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	MT-ND1--MT-RNR2	9	2	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	13	0	0.46	1	0.1017	0.0226	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MCF7_BREAST	0.46	1	0.1243	FALSE	114	26	4	85	0	FALSE	ACH-000019
MCF7_BREAST	C15orf57--CBX3	7	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	86	58	0.15	0.21	0.0791	0.0904	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MCF7_BREAST	0.15	0.21	0.1695	TRUE	267	562	48	632	0	FALSE	ACH-000019
MCF7_BREAST	COQ2--FAM175A	8	4	COQ2	12633	chr4:84182871:-	FAM175A	23283	chr4:84397832:-	INCL_NON_REF_SPLICE	YES	0	56	1	0.18	0.0904	0.0452	COQ2->chr4:84182689-84206067:-,coenzyme_Q2,_polyprenyltransferase,FAM175A->chr4:84382092-84444501:-,family_with_sequence_similarity_175_member_A	MCF7_BREAST	0.18	1	0.1356	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	8	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15644	68	0	0.13	0.0904	0.0226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	0	0.13	0.113	FALSE	231	217	16	283	0	FALSE	ACH-000019
MCF7_BREAST	MTAP--CDKN2B-AS1	7	6	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	40771	chr9:22112319:+	ONLY_REF_SPLICE	YES	0	6	1	0.68	0.0791	0.0678	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	MCF7_BREAST	0.68	1	0.1469	FALSE	0	5	0	7	0	FALSE	ACH-000019
MCF7_BREAST	ABCA5--PPP4R1L	3	21	ABCA5	7558	chr17:67309228:-	PPP4R1L	52141	chr20:56847931:-	INCL_NON_REF_SPLICE	YES	39	40	0.38	0.38	0.0339	0.2372	ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-,PPP4R1L->chr20:56806188-56884495:-,protein_phosphatase_4_regulatory_subunit_1_like_(pseudogene)	MCF7_BREAST	0.38	0.38	0.2711	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	C16orf45--ABCC1	6	9	C16orf45	1465	chr16:15528616:+	ABCC1	36962	chr16:16170183:+	ONLY_REF_SPLICE	YES	45	64	0.25	0.19	0.0678	0.1017	C16orf45->chr16:15528152-15718885:+,chromosome_16_open_reading_frame_45,ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+	MCF7_BREAST	0.19	0.25	0.1695	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	RP11-96H19.1--RP11-446N19.1	3	21	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.92	1	0.0339	0.2372	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MCF7_BREAST	0.92	1	0.2711	FALSE	467	2173	244	435	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ND4L	4	16	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12501	0	0	1	0.0452	0.1807	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MCF7_BREAST	0	1	0.2259	FALSE	343	822	44	305	0	FALSE	ACH-000019
MCF7_BREAST	NPM1P24--SET	8	0	NPM1P24	1378	chr10:74677915:-	SET	12311	chr9:131456206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0904	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MCF7_BREAST	1	1	0.0904	TRUE	0	0	0	434	0	FALSE	ACH-000019
MCF7_BREAST	RP11-977B10.2--SLC16A7	7	4	RP11-977B10.2	1104	chr12:49658436:-	SLC16A7	12410	chr12:60098553:+	ONLY_REF_SPLICE	YES	0	9	1	0.55	0.0791	0.0452	RP11-977B10.2->chr12:49627352-49658539:-,SLC16A7->chr12:59989848-60176395:+,solute_carrier_family_16_member_7	MCF7_BREAST	0.55	1	0.1243	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	C15orf57--CBX3	5	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	88	58	0.15	0.22	0.0565	0.1243	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MCF7_BREAST	0.15	0.22	0.1808	TRUE	267	562	48	632	0	FALSE	ACH-000019
MCF7_BREAST	RP11-15E18.1--LPPR5	5	11	RP11-15E18.1	1209	chr17:58603862:+	LPPR5	11249	chr1:99422297:-	ONLY_REF_SPLICE	YES	14	6	0.53	0.73	0.0565	0.1243	RP11-15E18.1->chr17:58603654-58628159:+,LPPR5->chr1:99355806-99470588:-	MCF7_BREAST	0.53	0.73	0.1808	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	USP32--APPBP2	6	7	USP32	7346	chr17:58378960:-	APPBP2	62518	chr17:58531853:-	ONLY_REF_SPLICE	YES	834	748	0.02	0.02	0.0678	0.0791	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],LOCAL_REARRANGEMENT:-:[20689],USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-	MCF7_BREAST	0.02	0.02	0.1469	TRUE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	ARRB1--KLHL35	3	18	ARRB1	1242	chr11:75062632:-	KLHL35	31211	chr11:75136626:-	ONLY_REF_SPLICE	YES	66	57	0.24	0.27	0.0339	0.2033	LOCAL_REARRANGEMENT:-:[70565],ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,KLHL35->chr11:75133438-75141674:-,kelch_like_family_member_35	MCF7_BREAST	0.24	0.27	0.2372	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	ESR1--CCDC170	6	6	ESR1	3373	chr6:152023140:+	CCDC170	40065	chr6:151907024:+	ONLY_REF_SPLICE	YES	8	35	0.6	0.26	0.0678	0.0678	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	MCF7_BREAST	0.26	0.6	0.1356	TRUE	0	1	0	2	1	TRUE	ACH-000019
MCF7_BREAST	PAPOLA--AK7	2	22	PAPOLA	2168	chr14:96968937:+	AK7	41634	chr14:96909067:+	ONLY_REF_SPLICE	YES	200	1	0.11	0.96	0.0226	0.2485	LOCAL_REARRANGEMENT:+:[12006],PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	MCF7_BREAST	0.11	0.96	0.2711	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	MT-ATP6--MT-CO1	7	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10249	28413	0	0	0.0791	0.0113	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCF7_BREAST	0	0	0.0904	FALSE	183	104	9	328	0	FALSE	ACH-000019
MCF7_BREAST	MYO9B--FCHO1	2	21	MYO9B	2996	chr19:17213367:+	FCHO1	54935	chr19:17881601:+	ONLY_REF_SPLICE	YES	30	13	0.43	0.64	0.0226	0.2372	{Klijn_CCL:Breast=1},MYO9B->chr19:17186591-17325346:+,myosin_IXB,FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+	MCF7_BREAST	0.43	0.64	0.2598	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RAD51C--ATXN7	4	13	RAD51C	10094	chr17:56798173:+	ATXN7	25577	chr3:63965591:+	ONLY_REF_SPLICE	YES	521	32	0.03	0.35	0.0452	0.1469	RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+,ATXN7->ataxin_7,chr3:63850233-63989138:+	MCF7_BREAST	0.03	0.35	0.1921	TRUE	0	0	0	2	0	FALSE	ACH-000019
MCF7_BREAST	EIF1--KRT18	7	0	EIF1	1093	chr17:39845229:+	KRT18	8033	chr12:53342903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0791	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,KRT18->chr12:53342655-53346685:+,keratin_18	MCF7_BREAST	1	1	0.0791	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	PLCG1--TOP1	7	0	PLCG1	1076	chr20:39765675:+	TOP1	35196	chr20:39729849:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0791	0	LOCAL_REARRANGEMENT:+:[12473],PLCG1->chr20:39765600-39811629:+,phospholipase_C_gamma_1,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	MCF7_BREAST	1	1	0.0791	TRUE	0	0	0	3	0	TRUE	ACH-000019
MCF7_BREAST	SMARCC1--EMCN	3	15	SMARCC1	5204	chr3:47779519:-	EMCN	42115	chr4:101505123:-	ONLY_REF_SPLICE	YES	88	0	0.17	1	0.0339	0.1694	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,EMCN->chr4:101316498-101801283:-,endomucin	MCF7_BREAST	0.17	1	0.2033	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	DEPDC1B--ELOVL7	1	22	DEPDC1B	8761	chr5:59938639:-	ELOVL7	32689	chr5:60053472:-	ONLY_REF_SPLICE	NO	98	13	0.19	0.64	0.0113	0.2485	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[51601],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,ELOVL7->ELOVL_fatty_acid_elongase_7,chr5:60047618-60140216:-	MCF7_BREAST	0.19	0.64	0.2598	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	MTAP--CDKN2B-AS1	4	10	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	37616	chr9:22092307:+	ONLY_REF_SPLICE	YES	0	2	1	0.88	0.0452	0.113	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	MCF7_BREAST	0.88	1	0.1582	FALSE	0	2	0	5	0	FALSE	ACH-000019
MCF7_BREAST	RP11-96H19.1--RP11-446N19.1	1	22	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.0113	0.2485	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MCF7_BREAST	0.96	1	0.2598	FALSE	275	511	55	178	0	FALSE	ACH-000019
MCF7_BREAST	SMARCA4--CARM1	6	2	SMARCA4	1253	chr19:11071850:+	CARM1	48111	chr19:11015627:+	ONLY_REF_SPLICE	YES	215	96	0.04	0.08	0.0678	0.0226	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[38145],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	MCF7_BREAST	0.04	0.08	0.0904	TRUE	0	2	0	2	1	FALSE	ACH-000019
MCF7_BREAST	BCAS4--RP5-1010E17.2	4	9	BCAS4	1280	chr20:49411710:+	RP5-1010E17.2	13441	chr20:54040148:-	ONLY_REF_SPLICE	YES	250	0	0.05	1	0.0452	0.1017	BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,RP5-1010E17.2->chr20:54036874-54043735:-	MCF7_BREAST	0.05	1	0.1469	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	MTAP--CDKN2B-AS1	6	1	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	44409	chr9:22120503:+	ONLY_REF_SPLICE	YES	0	4	1	0.64	0.0678	0.0113	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	MCF7_BREAST	0.64	1	0.0791	FALSE	0	5	0	4	0	FALSE	ACH-000019
MCF7_BREAST	PNPLA7--DPH7	6	1	PNPLA7	11064	chr9:140409831:-	DPH7	42870	chr9:140450100:-	ONLY_REF_SPLICE	YES	0	143	1	0.05	0.0678	0.0113	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[4370],PNPLA7->chr9:140354404-140444986:-,patatin_like_phospholipase_domain_containing_7,DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7	MCF7_BREAST	0.05	1	0.0791	TRUE	0	4	1	2	4	TRUE	ACH-000019
MCF7_BREAST	MTAP--CDKN2B-AS1	4	8	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	39664	chr9:22097257:+	ONLY_REF_SPLICE	YES	0	6	1	0.67	0.0452	0.0904	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	MCF7_BREAST	0.67	1	0.1356	FALSE	0	2	0	7	0	FALSE	ACH-000019
MCF7_BREAST	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0678	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MCF7_BREAST	1	1	0.0678	FALSE	292	1546	117	613	0	FALSE	ACH-000019
MCF7_BREAST	BCAS4--ZMYND8	4	6	BCAS4	1280	chr20:49411710:+	ZMYND8	44670	chr20:45839542:-	ONLY_REF_SPLICE	YES	250	169	0.04	0.06	0.0452	0.0678	BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8	MCF7_BREAST	0.04	0.06	0.113	TRUE	0	0	0	2	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ND4L	3	10	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.0339	0.113	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MCF7_BREAST	0.87	1	0.1469	FALSE	344	821	44	306	0	FALSE	ACH-000019
MCF7_BREAST	USP32--APPBP2	2	14	USP32	7346	chr17:58378960:-	APPBP2	61432	chr17:58533742:-	ONLY_REF_SPLICE	YES	834	891	0.02	0.02	0.0226	0.1581	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],LOCAL_REARRANGEMENT:-:[20689],USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-	MCF7_BREAST	0.02	0.02	0.1807	TRUE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	MT-ATP6--MT-CO1	5	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	10100	27957	0	0	0.0565	0.0113	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCF7_BREAST	0	0	0.0678	FALSE	183	104	9	328	0	FALSE	ACH-000019
MCF7_BREAST	MTAP--CDKN2B-AS1	3	9	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	38778	chr9:22096371:+	ONLY_REF_SPLICE	YES	0	3	1	0.8	0.0339	0.1017	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	MCF7_BREAST	0.8	1	0.1356	FALSE	0	2	0	7	0	FALSE	ACH-000019
MCF7_BREAST	RP11-141M1.3--STARD13	2	13	RP11-141M1.3	5599	chr13:34098375:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	7	20	0.68	0.43	0.0226	0.1469	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	MCF7_BREAST	0.43	0.68	0.1695	FALSE	9	22	2	16	0	FALSE	ACH-000019
MCF7_BREAST	RP11-680G10.1--GSE1	4	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	35	1	0.2	0.0452	0.0565	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MCF7_BREAST	0.2	1	0.1017	TRUE	458	1351	185	561	0	FALSE	ACH-000019
MCF7_BREAST	SLC7A5--ACTG1	5	1	SLC7A5	8068	chr16:87871474:-	ACTG1	21178	chr17:79478603:-	INCL_NON_REF_SPLICE	YES	3903	9549	0	0	0.0565	0.0113	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	MCF7_BREAST	0	0	0.0678	FALSE	0	0	0	11	0	FALSE	ACH-000019
MCF7_BREAST	DNAAF1--KRT8	5	0	DNAAF1	17533	chr16:84211212:+	KRT8	32648	chr12:53292683:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0565	0	DNAAF1->chr16:84178865-84212373:+,dynein_(axonemal)_assembly_factor_1,KRT8->chr12:53290977-53343738:-,keratin_8	MCF7_BREAST	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	EIF1--RPS28	5	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MCF7_BREAST	1	1	0.0565	TRUE	0	0	0	81	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	1	1	0.0565	FALSE	231	204	14	283	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	4	4	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.47	0.0452	0.0452	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	0.47	1	0.0904	FALSE	209	205	15	279	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	1	1	0.0565	FALSE	231	217	16	283	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	1	1	0.0565	FALSE	231	205	14	283	0	FALSE	ACH-000019
MCF7_BREAST	NCOA3--RP11-233E12.1	5	0	NCOA3	1163	chr20:46130763:+	RP11-233E12.1	32192	chr1:107380742:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0565	0	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,RP11-233E12.1->chr1:107360861-107380789:+	MCF7_BREAST	1	1	0.0565	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RP11-762I7.5--MMP19	4	4	RP11-762I7.5	9677	chr12:56194638:-	MMP19	20536	chr12:56236222:-	ONLY_REF_SPLICE	YES	629	0	0.01	1	0.0452	0.0452	LOCAL_REARRANGEMENT:-:[7887],RP11-762I7.5->chr12:56151059-56221330:-,MMP19->chr12:56229217-56236750:-,matrix_metallopeptidase_19	MCF7_BREAST	0.01	1	0.0904	FALSE	0	0	0	2	0	FALSE	ACH-000019
MCF7_BREAST	ATP9A--RP11-347D21.1	4	3	ATP9A	18144	chr20:50255882:-	RP11-347D21.1	40356	chr20:46580501:+	ONLY_REF_SPLICE	YES	246	0	0.03	1	0.0452	0.0339	ATP9A->ATPase_phospholipid_transporting_9A_(putative),chr20:50213053-50385173:-,RP11-347D21.1->chr20:46579543-46580799:+	MCF7_BREAST	0.03	1	0.0791	TRUE	0	0	0	2	0	FALSE	ACH-000019
MCF7_BREAST	NAV1--GPR37L1	2	11	NAV1	8635	chr1:201708972:+	GPR37L1	49629	chr1:202096869:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0226	0.1243	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,GPR37L1->G_protein-coupled_receptor_37_like_1,chr1:202091986-202102720:+	MCF7_BREAST	0.93	1	0.1469	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	NAV1--GPR37L1	2	11	NAV1	7107	chr1:201687883:+	GPR37L1	49629	chr1:202096869:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0226	0.1243	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,GPR37L1->G_protein-coupled_receptor_37_like_1,chr1:202091986-202102720:+	MCF7_BREAST	0.93	1	0.1469	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	RSBN1--DCLRE1B	4	3	RSBN1	1767	chr1:114354332:-	DCLRE1B	17045	chr1:114448091:+	INCL_NON_REF_SPLICE	YES	42	55	0.14	0.11	0.0452	0.0339	LOCAL_INVERSION:-:+:[92665],RSBN1->chr1:114304454-114355098:-,round_spermatid_basic_protein_1,DCLRE1B->DNA_cross-link_repair_1B,chr1:114447763-114456708:+	MCF7_BREAST	0.11	0.14	0.0791	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	SYTL2--PICALM	4	3	SYTL2	2678	chr11:85468668:-	PICALM	57621	chr11:85685855:-	ONLY_REF_SPLICE	YES	381	333	0.02	0.02	0.0452	0.0339	{Klijn_CCL:Stomach=1},SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	MCF7_BREAST	0.02	0.02	0.0791	TRUE	0	0	1	1	0	FALSE	ACH-000019
MCF7_BREAST	AHCYL1--RAD51C	3	6	AHCYL1	2808	chr1:110547073:+	RAD51C	32162	chr17:56811479:+	ONLY_REF_SPLICE	YES	193	308	0.04	0.03	0.0339	0.0678	{Klijn_CCL:Breast=1},AHCYL1->adenosylhomocysteinase_like_1,chr1:110527308-110566357:+,RAD51C->RAD51_paralog_C,chr17:56769934-56811703:+	MCF7_BREAST	0.03	0.04	0.1017	TRUE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	C10orf112--PLXDC2	2	10	C10orf112	29174	chr10:19981483:+	PLXDC2	37923	chr10:20290704:+	ONLY_REF_SPLICE	YES	32	48	0.27	0.2	0.0226	0.113	NEIGHBORS[25838],C10orf112->chr10:19492779-20079330:+,PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2	MCF7_BREAST	0.2	0.27	0.1356	FALSE	13	21	4	3	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	4	2	MT-ND4	1774	chrM:11533:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	16723	0	0	1	0.0452	0.0226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	0	1	0.0678	FALSE	231	217	16	283	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	4	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16727	9	0	0.4	0.0452	0.0226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	0	0.4	0.0678	FALSE	231	217	16	283	0	FALSE	ACH-000019
MCF7_BREAST	KRT8--TMED9	4	1	KRT8	1758	chr12:53342981:-	TMED9	16708	chr5:177019206:+	INCL_NON_REF_SPLICE	NO	70	0	0.07	1	0.0452	0.0113	KRT8->chr12:53290977-53343738:-,keratin_8,TMED9->chr5:177019159-177023125:+,transmembrane_p24_trafficking_protein_9	MCF7_BREAST	0.07	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	MT-ATP6--MT-CO1	3	5	MT-ATP6	1537	chrM:9063:+	MT-CO1	5319	chrM:6541:+	INCL_NON_REF_SPLICE	YES	4662	27959	0	0	0.0339	0.0565	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCF7_BREAST	0	0	0.0904	FALSE	183	104	9	328	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	4	1	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	19767	749	0	0.01	0.0452	0.0113	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	0	0.01	0.0565	FALSE	231	217	16	283	0	FALSE	ACH-000019
MCF7_BREAST	SLC7A5--RPL39	4	1	SLC7A5	8058	chr16:87871484:-	RPL39	17596	chrX:118925591:-	INCL_NON_REF_SPLICE	YES	3958	0	0	1	0.0452	0.0113	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	MCF7_BREAST	0	1	0.0565	FALSE	0	0	0	5	0	FALSE	ACH-000019
MCF7_BREAST	SULF2--PRICKLE2	1	13	SULF2	1782	chr20:46414579:-	PRICKLE2	40949	chr3:64085601:-	ONLY_REF_SPLICE	YES	240	2	0.06	0.88	0.0113	0.1469	SULF2->Oncogene{Bushman},chr20:46285092-46415360:-,sulfatase_2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	MCF7_BREAST	0.06	0.88	0.1582	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	TEX14--PTPRG	4	1	TEX14	36670	chr17:56636814:-	PTPRG	43648	chr3:61734552:+	ONLY_REF_SPLICE	YES	67	8	0.07	0.38	0.0452	0.0113	TEX14->chr17:56634039-56769416:-,testis_expressed_14,PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G	MCF7_BREAST	0.07	0.38	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	ATP6C--KRT18	4	0	ATP6C	1091	chr16:2564056:+	KRT18	7002	chr12:53342903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	ATP6C->chr16:2563966-2577956:+,KRT18->chr12:53342655-53346685:+,keratin_18	MCF7_BREAST	1	1	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	1	1	0.0452	FALSE	230	197	14	283	0	FALSE	ACH-000019
MCF7_BREAST	TAF4--BRIP1	2	8	TAF4	2360	chr20:60639507:-	BRIP1	35457	chr17:59886118:-	ONLY_REF_SPLICE	YES	50	353	0.17	0.03	0.0226	0.0904	{Klijn_CCL:Breast=1},TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-	MCF7_BREAST	0.03	0.17	0.113	TRUE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	MTAP--CDKN2B-AS1	1	11	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	27457	chr9:22046750:+	ONLY_REF_SPLICE	YES	0	5	1	0.71	0.0113	0.1243	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	MCF7_BREAST	0.71	1	0.1356	FALSE	0	3	0	6	0	FALSE	ACH-000019
MCF7_BREAST	PLCG1--TOP1	3	3	PLCG1	1899	chr20:39766498:+	TOP1	35196	chr20:39729849:+	ONLY_REF_SPLICE	YES	35	516	0.15	0.01	0.0339	0.0339	LOCAL_REARRANGEMENT:+:[12473],PLCG1->chr20:39765600-39811629:+,phospholipase_C_gamma_1,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	MCF7_BREAST	0.01	0.15	0.0678	FALSE	0	0	0	3	0	FALSE	ACH-000019
MCF7_BREAST	RP11-108K3.1--GLDN	2	7	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	3	1	0.75	0.0226	0.0791	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	MCF7_BREAST	0.75	1	0.1017	FALSE	1	20	0	46	0	FALSE	ACH-000019
MCF7_BREAST	SLC7A5--RPL39	3	3	SLC7A5	10437	chr16:87868160:-	RPL39	17598	chrX:118925589:-	INCL_NON_REF_SPLICE	YES	3565	0	0	1	0.0339	0.0339	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,RPL39->chrX:118920467-118925606:-,ribosomal_protein_L39	MCF7_BREAST	0	1	0.0678	FALSE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	TBL1XR1--RGS17	2	7	TBL1XR1	4339	chr3:176849151:-	RGS17	34360	chr6:153365178:-	ONLY_REF_SPLICE	YES	12	0	0.43	1	0.0226	0.0791	chimerdb_pubmed{Breast carcinoma,breast cancer},TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RGS17->chr6:153325594-153452384:-,regulator_of_G-protein_signaling_17	MCF7_BREAST	0.43	1	0.1017	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	EIF3H--RAD21	1	10	EIF3H	3765	chr8:117767905:-	RAD21	24431	chr8:117879000:-	ONLY_REF_SPLICE	YES	2388	106	0	0.09	0.0113	0.113	LOCAL_REARRANGEMENT:-:[79010],EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-	MCF7_BREAST	0	0.09	0.1243	TRUE	0	0	0	3	0	FALSE	ACH-000019
MCF7_BREAST	MT-ATP6--MT-CO1	3	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5332	chrM:6554:+	INCL_NON_REF_SPLICE	YES	10275	29082	0	0	0.0339	0.0226	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCF7_BREAST	0	0	0.0565	FALSE	183	104	9	328	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND1--MT-RNR2	3	2	MT-ND1	1272	chrM:3578:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	YES	14	0	0.26	1	0.0339	0.0226	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MCF7_BREAST	0.26	1	0.0565	FALSE	114	26	4	85	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	16682	0	0	1	0.0339	0.0226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	0	1	0.0565	FALSE	231	217	16	283	0	FALSE	ACH-000019
MCF7_BREAST	NPM1P24--SET	3	2	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	38	1666	0.12	0	0.0339	0.0226	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MCF7_BREAST	0	0.12	0.0565	FALSE	0	0	0	434	0	FALSE	ACH-000019
MCF7_BREAST	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	25	0	0.17	1	0.0339	0.0226	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MCF7_BREAST	0.17	1	0.0565	FALSE	125	705	46	456	0	FALSE	ACH-000019
MCF7_BREAST	TBL1XR1--RGS17	2	6	TBL1XR1	3252	chr3:176878659:-	RGS17	34360	chr6:153365178:-	ONLY_REF_SPLICE	YES	11	0	0.42	1	0.0226	0.0678	chimerdb_pubmed{Breast carcinoma,breast cancer},TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RGS17->chr6:153325594-153452384:-,regulator_of_G-protein_signaling_17	MCF7_BREAST	0.42	1	0.0904	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	ARF1--MT-CO1	3	1	ARF1	6847	chr1:228285399:+	MT-CO1	11362	chrM:5905:+	INCL_NON_REF_SPLICE	YES	2200	0	0	1	0.0339	0.0113	ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCF7_BREAST	0	1	0.0452	FALSE	0	0	0	7	0	FALSE	ACH-000019
MCF7_BREAST	ARF1--MT-CO1	3	1	ARF1	6843	chr1:228285395:+	MT-CO1	11358	chrM:5901:+	INCL_NON_REF_SPLICE	YES	2204	0	0	1	0.0339	0.0113	ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCF7_BREAST	0	1	0.0452	FALSE	0	0	0	7	0	FALSE	ACH-000019
MCF7_BREAST	BCAS4--RP5-1010E17.2	2	5	BCAS4	1280	chr20:49411710:+	RP5-1010E17.2	14575	chr20:54038900:-	ONLY_REF_SPLICE	YES	250	0	0.03	1	0.0226	0.0565	BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,RP5-1010E17.2->chr20:54036874-54043735:-	MCF7_BREAST	0.03	1	0.0791	TRUE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	EIF1--KRT18	3	1	EIF1	1101	chr17:39845237:+	KRT18	8032	chr12:53342902:+	INCL_NON_REF_SPLICE	YES	18	4	0.18	0.5	0.0339	0.0113	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,KRT18->chr12:53342655-53346685:+,keratin_18	MCF7_BREAST	0.18	0.5	0.0452	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	ESR1--CCDC170	2	5	ESR1	2242	chr6:152011799:+	CCDC170	38747	chr6:151894309:+	ONLY_REF_SPLICE	YES	6	33	0.54	0.17	0.0226	0.0565	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	MCF7_BREAST	0.17	0.54	0.0791	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	GSN--SMIM22	3	1	GSN	9717	chr9:124043840:+	SMIM22	40757	chr16:4844953:+	ONLY_REF_SPLICE	YES	270	0	0.01	1	0.0339	0.0113	GSN->Oncogene{Bushman},chr9:123970072-124095121:+,gelsolin,SMIM22->chr16:4838398-4846492:+,small_integral_membrane_protein_22	MCF7_BREAST	0.01	1	0.0452	FALSE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	10249	25050	0	0	0.0339	0.0113	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCF7_BREAST	0	0	0.0452	FALSE	183	104	9	328	0	FALSE	ACH-000019
MCF7_BREAST	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	NO	38	1660	0.1	0	0.0339	0.0113	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MCF7_BREAST	0	0.1	0.0452	FALSE	0	0	0	434	0	FALSE	ACH-000019
MCF7_BREAST	NPM1P24--SET	3	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	38	1514	0.1	0	0.0339	0.0113	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MCF7_BREAST	0	0.1	0.0452	FALSE	0	0	0	434	0	FALSE	ACH-000019
MCF7_BREAST	UBE2V1--TBX2	3	1	UBE2V1	3082	chr20:48729644:-	TBX2	18296	chr17:59479045:+	ONLY_REF_SPLICE	YES	12	137	0.25	0.03	0.0339	0.0113	UBE2V1->chr20:48697661-48732496:-,ubiquitin_conjugating_enzyme_E2_V1,TBX2->Oncogene{Bushman},T-box_2,chr17:59477257-59486827:+	MCF7_BREAST	0.03	0.25	0.0452	TRUE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	ARRB1--KLHL35	2	4	ARRB1	1242	chr11:75062632:-	KLHL35	32400	chr11:75134924:-	ONLY_REF_SPLICE	YES	66	60	0.08	0.09	0.0226	0.0452	LOCAL_REARRANGEMENT:-:[70565],ARRB1->arrestin_beta_1,chr11:74975226-75062873:-,KLHL35->chr11:75133438-75141674:-,kelch_like_family_member_35	MCF7_BREAST	0.08	0.09	0.0678	TRUE	0	0	0	2	0	FALSE	ACH-000019
MCF7_BREAST	BASP1--RP11-321E2.3	3	0	BASP1	4506	chr5:17217919:+	RP11-321E2.3	12944	chr5:17441578:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+,RP11-321E2.3->chr5:17404128-17441803:+	MCF7_BREAST	1	1	0.0339	TRUE	0	4	0	4	3	TRUE	ACH-000019
MCF7_BREAST	C16orf62--IQCK	3	0	C16orf62	12433	chr16:19603196:+	IQCK	58814	chr16:19867809:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	{Klijn_CCL:Breast=1},NEIGHBORS[9663],C16orf62->chr16:19566562-19718115:+,chromosome_16_open_reading_frame_62,IQCK->IQ_motif_containing_K,chr16:19727778-19868907:+	MCF7_BREAST	1	1	0.0339	FALSE	0	0	1	1	0	FALSE	ACH-000019
MCF7_BREAST	CNR2--H3F3B	3	0	CNR2	2237	chr1:24275893:-	H3F3B	16862	chr17:73775255:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	CNR2->Oncogene{Bushman},cannabinoid_receptor_2,chr1:24197016-24285549:-,H3F3B->H3_histone,_family_3B_(H3.3B),chr17:73772515-73781974:-	MCF7_BREAST	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	H1FX--KRT8	3	0	H1FX	1444	chr3:129034677:-	KRT8	10695	chr12:53298744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	H1FX->H1_histone_family_member_X,chr3:129033615-129035120:-,KRT8->chr12:53290977-53343738:-,keratin_8	MCF7_BREAST	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1074	chrM:8600:+	MT-CO1	5869	chrM:7091:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCF7_BREAST	1	1	0.0339	FALSE	183	104	9	328	0	FALSE	ACH-000019
MCF7_BREAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MCF7_BREAST	1	1	0.0339	FALSE	183	104	9	328	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1164	chrM:10923:+	MT-ATP8	5389	chrM:8376:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	1	1	0.0339	FALSE	230	193	14	283	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	1	1	0.0339	FALSE	231	217	16	283	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	1	1	0.0339	FALSE	230	198	14	283	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	1	1	0.0339	FALSE	230	193	14	283	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1426	chrM:11185:+	MT-ATP8	5383	chrM:8370:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	1	1	0.0339	FALSE	231	217	16	283	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	1	1	0.0339	FALSE	231	217	16	283	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	1	1	0.0339	FALSE	231	205	14	283	0	FALSE	ACH-000019
MCF7_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1285	chrM:11044:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MCF7_BREAST	1	1	0.0339	FALSE	231	205	14	283	0	FALSE	ACH-000019
MCF7_BREAST	NUCB1--KRT18	3	0	NUCB1	4214	chr19:49409043:+	KRT18	15352	chr12:53342905:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	NUCB1->chr19:49403307-49426629:+,nucleobindin_1,KRT18->chr12:53342655-53346685:+,keratin_18	MCF7_BREAST	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	PCAT1--RP11-382A18.2	3	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	MCF7_BREAST	1	1	0.0339	TRUE	4	84	1	46	0	FALSE	ACH-000019
MCF7_BREAST	USP31--CRYL1	3	0	USP31	1633	chr16:23159959:-	CRYL1	33512	chr13:21013893:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	{Klijn_CCL:Breast=1},USP31->chr16:23072727-23160591:-,ubiquitin_specific_peptidase_31,CRYL1->chr13:20977806-21099996:-,crystallin_lambda_1	MCF7_BREAST	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	ZMYND8--USP32	3	0	ZMYND8	16558	chr20:45910846:-	USP32	41833	chr17:58422969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32	MCF7_BREAST	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	AP001347.6--ANKRD20A11P	2	3	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	18278	chr21:15330506:-	ONLY_REF_SPLICE	YES	0	4	1	0.56	0.0226	0.0339	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	MCF7_BREAST	0.56	1	0.0565	TRUE	0	0	0	3	0	TRUE	ACH-000019
MCF7_BREAST	RP11-108K3.1--GLDN	1	7	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	0	3	1	0.73	0.0113	0.0791	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	MCF7_BREAST	0.73	1	0.0904	FALSE	1	20	0	46	0	FALSE	ACH-000019
MCF7_BREAST	RP11-108K3.1--GLDN	1	7	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	3	1	0.73	0.0113	0.0791	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	MCF7_BREAST	0.73	1	0.0904	FALSE	0	30	1	55	0	FALSE	ACH-000019
MCF7_BREAST	BCAS4--ZMYND8	1	6	BCAS4	1280	chr20:49411710:+	ZMYND8	43586	chr20:45841370:-	ONLY_REF_SPLICE	NO	250	139	0.03	0.05	0.0113	0.0678	BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8	MCF7_BREAST	0.03	0.05	0.0791	TRUE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	35	0	0.1	1	0.0226	0.0226	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MCF7_BREAST	0.1	1	0.0452	FALSE	164	806	69	479	0	FALSE	ACH-000019
MCF7_BREAST	POP1--MATN2	2	2	POP1	1569	chr8:99130093:+	MATN2	42063	chr8:99042690:+	ONLY_REF_SPLICE	YES	4	24	0.5	0.14	0.0226	0.0226	LOCAL_REARRANGEMENT:+:[80581],POP1->POP1_homolog,_ribonuclease_P/MRP_subunit,chr8:99129525-99172062:+,MATN2->chr8:98881068-99048944:+,matrilin_2	MCF7_BREAST	0.14	0.5	0.0452	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	B3GNTL1--SLC9A8	1	5	B3GNTL1	14863	chr17:80914571:-	SLC9A8	37320	chr20:48494518:+	ONLY_REF_SPLICE	YES	5	47	0.55	0.11	0.0113	0.0565	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,SLC9A8->chr20:48429250-48508779:+,solute_carrier_family_9_member_A8	MCF7_BREAST	0.11	0.55	0.0678	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	ELP2--SLC39A6	2	1	ELP2	2707	chr18:33713279:+	SLC39A6	38662	chr18:33694437:-	ONLY_REF_SPLICE	YES	1485	5439	0	0	0.0226	0.0113	LOCAL_INVERSION:+:-:[59],ELP2->chr18:33709407-33757909:+,elongator_acetyltransferase_complex_subunit_2,SLC39A6->Oncogene{Bushman},chr18:33688495-33709348:-,solute_carrier_family_39_member_6	MCF7_BREAST	0	0	0.0339	FALSE	0	0	0	2	0	FALSE	ACH-000019
MCF7_BREAST	MB21D2--FGF12	2	1	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	48	4	0.06	0.43	0.0226	0.0113	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	MCF7_BREAST	0.06	0.43	0.0339	FALSE	0	17	0	46	0	FALSE	ACH-000019
MCF7_BREAST	RP1-34H18.1--NAV3	2	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0.0113	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	MCF7_BREAST	1	1	0.0339	TRUE	254	575	65	124	0	FALSE	ACH-000019
MCF7_BREAST	RP11-710F7.2--TBCK	2	1	RP11-710F7.2	1127	chr4:106853753:-	TBCK	42538	chr4:107037535:-	ONLY_REF_SPLICE	YES	8	40	0.27	0.07	0.0226	0.0113	RP11-710F7.2->chr4:106848217-106853879:-,TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-	MCF7_BREAST	0.07	0.27	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	TANC2--CA4	1	5	TANC2	1071	chr17:61086987:+	CA4	52881	chr17:58232675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0113	0.0565	{Klijn_CCL:Breast=1},TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,CA4->carbonic_anhydrase_4,chr17:58227297-58248260:+	MCF7_BREAST	1	1	0.0678	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	AP3D1--PACS2	2	0	AP3D1	7156	chr19:2132470:-	PACS2	52511	chr14:105857544:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,PACS2->chr14:105766900-105864484:+,phosphofurin_acidic_cluster_sorting_protein_2	MCF7_BREAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	CMIP--GET4	2	0	CMIP	17550	chr16:81712233:+	GET4	40868	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	CMIP->c-Maf_inducing_protein,chr16:81478775-81745367:+,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	MCF7_BREAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	CMTM8--CMTM7	2	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	MCF7_BREAST	1	1	0.0226	FALSE	118	557	29	88	0	FALSE	ACH-000019
MCF7_BREAST	CSAD--NECAP1	2	0	CSAD	1126	chr12:53575010:-	NECAP1	22458	chr12:8245272:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	CSAD->chr12:53551447-53575135:-,cysteine_sulfinic_acid_decarboxylase,NECAP1->NECAP_endocytosis_associated_1,chr12:8234807-8250367:+	MCF7_BREAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	CTA-392E5.1--ATP6V0D2	2	0	CTA-392E5.1	1081	chr8:86852014:+	ATP6V0D2	13804	chr8:87111133:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NEIGHBORS[36240],CTA-392E5.1->chr8:86851934-86963312:+,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	MCF7_BREAST	1	1	0.0226	FALSE	0	7	0	2	0	FALSE	ACH-000019
MCF7_BREAST	PAPOLA--AK7	1	4	PAPOLA	2168	chr14:96968937:+	AK7	43814	chr14:96916139:+	ONLY_REF_SPLICE	NO	200	80	0.02	0.06	0.0113	0.0452	LOCAL_REARRANGEMENT:+:[12006],PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	MCF7_BREAST	0.02	0.06	0.0565	TRUE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	SART3--CORO1C	2	0	SART3	1558	chr12:108954619:-	CORO1C	31753	chr12:109072170:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_REARRANGEMENT:-:[83709],SART3->chr12:108916357-108955176:-,squamous_cell_carcinoma_antigen_recognized_by_T-cells_3,CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C	MCF7_BREAST	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	AP001347.6--ANKRD20A11P	1	3	AP001347.6	1177	chr21:15399918:+	ANKRD20A11P	13921	chr21:15342431:-	ONLY_REF_SPLICE	YES	0	4	1	0.5	0.0113	0.0339	LOCAL_INVERSION:+:-:[46984],AP001347.6->chr21:15399742-15516789:+,ANKRD20A11P->ankyrin_repeat_domain_20_family_member_A11,_pseudogene,chr21:15281895-15352758:-	MCF7_BREAST	0.5	1	0.0452	TRUE	0	1	0	4	1	TRUE	ACH-000019
MCF7_BREAST	CTA-392E5.1--ATP6V0D2	1	3	CTA-392E5.1	2141	chr8:86898223:+	ATP6V0D2	12199	chr8:87100629:+	ONLY_REF_SPLICE	NO	66	1	0.06	0.8	0.0113	0.0339	NEIGHBORS[36240],CTA-392E5.1->chr8:86851934-86963312:+,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	MCF7_BREAST	0.06	0.8	0.0452	FALSE	0	15	0	1	0	FALSE	ACH-000019
MCF7_BREAST	PTPRG--CCDC129	1	3	PTPRG	10407	chr3:61989171:+	CCDC129	61067	chr7:31681790:+	ONLY_REF_SPLICE	YES	20	0	0.17	1	0.0113	0.0339	PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,CCDC129->chr7:31553704-31698334:+,coiled-coil_domain_containing_129	MCF7_BREAST	0.17	1	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	SMARCA4--CARM1	1	3	SMARCA4	6944	chr19:11095049:+	CARM1	48111	chr19:11015627:+	ONLY_REF_SPLICE	YES	151	96	0.03	0.04	0.0113	0.0339	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[38145],SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	MCF7_BREAST	0.03	0.04	0.0452	TRUE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	B3GNTL1--SLC9A8	1	2	B3GNTL1	14863	chr17:80914571:-	SLC9A8	38403	chr20:48497461:+	ONLY_REF_SPLICE	NO	5	43	0.38	0.07	0.0113	0.0226	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,SLC9A8->chr20:48429250-48508779:+,solute_carrier_family_9_member_A8	MCF7_BREAST	0.07	0.38	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	COQ2--FAM175A	1	2	COQ2	11762	chr4:84183742:-	FAM175A	23283	chr4:84397832:-	ONLY_REF_SPLICE	NO	2	56	0.6	0.05	0.0113	0.0226	COQ2->chr4:84182689-84206067:-,coenzyme_Q2,_polyprenyltransferase,FAM175A->chr4:84382092-84444501:-,family_with_sequence_similarity_175_member_A	MCF7_BREAST	0.05	0.6	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	ELP2--SLC39A6	1	2	ELP2	2707	chr18:33713279:+	SLC39A6	37556	chr18:33696742:-	ONLY_REF_SPLICE	YES	1485	4944	0	0	0.0113	0.0226	LOCAL_INVERSION:+:-:[59],ELP2->chr18:33709407-33757909:+,elongator_acetyltransferase_complex_subunit_2,SLC39A6->Oncogene{Bushman},chr18:33688495-33709348:-,solute_carrier_family_39_member_6	MCF7_BREAST	0	0	0.0339	FALSE	0	0	0	2	0	FALSE	ACH-000019
MCF7_BREAST	ELP2--SLC39A6	1	2	ELP2	8226	chr18:33721164:+	SLC39A6	36337	chr18:33702233:-	ONLY_REF_SPLICE	NO	1394	4899	0	0	0.0113	0.0226	LOCAL_INVERSION:+:-:[59],ELP2->chr18:33709407-33757909:+,elongator_acetyltransferase_complex_subunit_2,SLC39A6->Oncogene{Bushman},chr18:33688495-33709348:-,solute_carrier_family_39_member_6	MCF7_BREAST	0	0	0.0339	FALSE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	SGPP2--ULK4	1	2	SGPP2	2464	chr2:223339445:+	ULK4	55207	chr3:41291065:-	ONLY_REF_SPLICE	YES	5	2	0.38	0.6	0.0113	0.0226	SGPP2->chr2:223289236-223425667:+,sphingosine-1-phosphate_phosphatase_2,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	MCF7_BREAST	0.38	0.6	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	VAV3--AP4B1-AS1	1	2	VAV3	37724	chr1:108138834:-	AP4B1-AS1	48230	chr1:114440490:+	ONLY_REF_SPLICE	YES	54	0	0.05	1	0.0113	0.0226	VAV3->Oncogene{Bushman},chr1:108113782-108507766:-,vav_guanine_nucleotide_exchange_factor_3,AP4B1-AS1->AP4B1_antisense_RNA_1,chr1:114399257-114443859:+	MCF7_BREAST	0.05	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000019
MCF7_BREAST	ADAMTS19--ISOC1	1	1	ADAMTS19	2493	chr5:128797450:+	ISOC1	32943	chr5:128440649:+	ONLY_REF_SPLICE	NO	49	675	0.04	0	0.0113	0.0113	ADAMTS19->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_19,chr5:128795958-129074376:+,ISOC1->chr5:128430444-128449721:+,isochorismatase_domain_containing_1	MCF7_BREAST	0	0.04	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	C16orf45--ABCC1	1	1	C16orf45	1465	chr16:15528616:+	ABCC1	41510	chr16:16184262:+	ONLY_REF_SPLICE	NO	45	65	0.04	0.03	0.0113	0.0113	C16orf45->chr16:15528152-15718885:+,chromosome_16_open_reading_frame_45,ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+	MCF7_BREAST	0.03	0.04	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	CERS5--SS18L1	1	1	CERS5	14794	chr12:50528329:-	SS18L1	30785	chr20:60747738:+	ONLY_REF_SPLICE	YES	118	112	0.02	0.02	0.0113	0.0113	CERS5->ceramide_synthase_5,chr12:50523575-50561288:-,SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+	MCF7_BREAST	0.02	0.02	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	CHEK2--XBP1	1	1	CHEK2	10244	chr22:29121231:-	XBP1	28654	chr22:29195141:-	ONLY_REF_SPLICE	YES	90	1247	0.02	0	0.0113	0.0113	LOCAL_REARRANGEMENT:-:[52133],CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,XBP1->X-box_binding_protein_1,chr22:29190543-29196585:-	MCF7_BREAST	0	0.02	0.0226	FALSE	0	1	0	2	0	FALSE	ACH-000019
MCF7_BREAST	CPSF6--CAMSAP2	1	1	CPSF6	11046	chr12:69656342:+	CAMSAP2	28674	chr1:200813910:+	ONLY_REF_SPLICE	YES	189	98	0.01	0.02	0.0113	0.0113	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+	MCF7_BREAST	0.01	0.02	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	DEPDC1B--ELOVL7	1	1	DEPDC1B	4088	chr5:59982789:-	ELOVL7	32689	chr5:60053472:-	ONLY_REF_SPLICE	YES	159	13	0.01	0.13	0.0113	0.0113	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[51601],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,ELOVL7->ELOVL_fatty_acid_elongase_7,chr5:60047618-60140216:-	MCF7_BREAST	0.01	0.13	0.0226	FALSE	0	0	0	2	0	FALSE	ACH-000019
MCF7_BREAST	FAM49B--ASAP1	1	1	FAM49B	2813	chr8:130983189:-	ASAP1	56499	chr8:131140336:-	ONLY_REF_SPLICE	YES	121	34	0.02	0.06	0.0113	0.0113	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[34978],FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-	MCF7_BREAST	0.02	0.06	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	KCND3--PPM1E	1	1	KCND3	3586	chr1:112524243:-	PPM1E	21898	chr17:57046900:+	ONLY_REF_SPLICE	YES	0	7	1	0.22	0.0113	0.0113	KCND3->chr1:112313284-112531777:-,potassium_voltage-gated_channel_subfamily_D_member_3,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	MCF7_BREAST	0.22	1	0.0226	TRUE	0	0	0	2	0	TRUE	ACH-000019
MCF7_BREAST	SEPT9--SEC14L1	1	1	SEPT9	6917	chr17:75303279:+	SEC14L1	61120	chr17:75186885:+	ONLY_REF_SPLICE	NO	386	83	0.01	0.02	0.0113	0.0113	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],LOCAL_REARRANGEMENT:+:[63472],SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,SEC14L1->SEC14_like_lipid_binding_1,chr17:75082798-75213179:+	MCF7_BREAST	0.01	0.02	0.0226	FALSE	0	1	0	1	1	FALSE	ACH-000019
MCF7_BREAST	SPIN1--GNAS	1	1	SPIN1	1120	chr9:91003453:+	GNAS	33527	chr20:57470667:+	ONLY_REF_SPLICE	YES	24	2759	0.08	0	0.0113	0.0113	GTEx&tcga_normals:1/3694=0.03%,SPIN1->chr9:91003334-91093609:+,spindlin_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	MCF7_BREAST	0	0.08	0.0226	FALSE	0	1	0	4	0	FALSE	ACH-000019
MCF7_BREAST	SUN1--ADAP1	1	1	SUN1	23266	chr7:905704:+	ADAP1	49955	chr7:944809:-	ONLY_REF_SPLICE	YES	318	93	0.01	0.02	0.0113	0.0113	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Aorta=1,Prostate=1,Uterus=1},LOCAL_INVERSION:+:-:[1468],SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+,ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-	MCF7_BREAST	0.01	0.02	0.0226	FALSE	3	2	0	4	0	FALSE	ACH-000019
MCF7_BREAST	UBE2V1--TBX2	1	1	UBE2V1	4360	chr20:48727826:-	TBX2	18296	chr17:59479045:+	ONLY_REF_SPLICE	YES	18	137	0.1	0.01	0.0113	0.0113	UBE2V1->chr20:48697661-48732496:-,ubiquitin_conjugating_enzyme_E2_V1,TBX2->Oncogene{Bushman},T-box_2,chr17:59477257-59486827:+	MCF7_BREAST	0.01	0.1	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000019
MCF7_BREAST	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	56	0	0.03	1	0.0113	0.0113	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	MCF7_BREAST	0.03	1	0.0226	FALSE	272	151	14	158	0	FALSE	ACH-000019
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	147	89	BCR	21553	chr22:23632600:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	30	0	0.89	1	1.6564	1.0029	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	2.6593	TRUE	0	2	1	16	2	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	68	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7662	0.1916	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9578	TRUE	508	994	45	981	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	54	37	ABL1	1510	chr9:133589842:+	BCR	42099	chr22:23634728:+	ONLY_REF_SPLICE	YES	0	28	1	0.76	0.6085	0.4169	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	1.0254	TRUE	0	2	0	9	2	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	43	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	129	8	0.26	0.85	0.4845	0.0225	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.85	0.507	TRUE	519	3926	326	965	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	29	1	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	16	1327	0.65	0.02	0.3268	0.0113	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.65	0.3381	TRUE	0	0	0	518	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	27	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3042	0.0225	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3267	FALSE	462	80	0	856	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	20	19	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	67	12	0.37	0.76	0.2254	0.2141	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.76	0.4395	TRUE	267	562	48	632	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	14	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1578	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1578	FALSE	13	9	0	364	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	13	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1465	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1465	FALSE	13	9	0	364	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1352	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1352	TRUE	46	1352	75	139	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1014	0.0225	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1239	FALSE	462	80	0	856	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	8	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0901	0.0113	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1014	FALSE	515	4851	409	746	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	7	3	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0.0338	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1127	TRUE	0	1	0	84	1	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	7	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	66	1	0.13	0.0789	0.0338	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.1127	TRUE	465	1949	224	605	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	4	13	ABL1	1510	chr9:133589842:+	BCR	43197	chr22:23637211:+	ONLY_REF_SPLICE	YES	0	22	1	0.44	0.0451	0.1465	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.1916	TRUE	0	0	0	6	0	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	7	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0789	FALSE	183	104	9	328	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ND1	7	0	MT-CO3	1450	chrM:9656:+	MT-ND1	5462	chrM:3984:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0	LOCAL_REARRANGEMENT:+:[4945],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0789	FALSE	12	48	6	3	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0789	FALSE	462	80	0	856	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	6	1	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	34	0	0.17	1	0.0676	0.0113	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.0789	TRUE	0	0	0	81	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0676	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0676	FALSE	183	104	9	328	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRRM4--SRSF5	6	0	SRRM4	17888	chr12:119594543:+	SRSF5	33632	chr14:70237969:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0676	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:2=pct:0.6],Blood_Vessel=[count:2=pct:0.5],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Brain=[count:1=pct:0.2]},GTEx_v2:{count=17;pct=0.20%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Ovary=1,Lung=1,Artery_-_Aorta=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Colon_-_Transverse=1},SRRM4->chr12:119419300-119600856:+,serine/arginine_repetitive_matrix_4,SRSF5->chr14:70193617-70238722:+,serine/arginine-rich_splicing_factor_5	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0676	TRUE	7	0	0	1	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	10	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	62	13	0.17	0.5	0.0338	0.1127	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.5	0.1465	TRUE	267	562	48	632	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL5	5	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0563	TRUE	0	0	0	39	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR18--ARID3A	4	4	WDR18	2390	chr19:984563:+	ARID3A	17305	chr19:960092:+	ONLY_REF_SPLICE	YES	192	32	0.04	0.2	0.0451	0.0451	LOCAL_REARRANGEMENT:+:[7235],WDR18->WD_repeat_domain_18,chr19:983174-994569:+,ARID3A->AT-rich_interaction_domain_3A,chr19:925781-975939:+	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.2	0.0902	TRUE	0	0	0	1	0	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	3	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	1025	0	0.01	1	0.0451	0.0338	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0789	FALSE	0	0	0	81	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ABL1--BCR	2	8	ABL1	1510	chr9:133589842:+	BCR	48463	chr22:23651611:+	ONLY_REF_SPLICE	YES	0	57	1	0.15	0.0225	0.0901	YOSHIHARA_TCGA_num_samples[LAML:3],chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{positive chronic myeloid leukemia (positiveCML),chronic myelogenous leukemia,chronic myeloid leukemia,chronic myelogenous leukemia (CML),chronic myelogenous leukemia(CML),acute lymphoblastic leukemia},{Klijn_CCL:Lymphoid=3},ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.1126	TRUE	0	1	0	5	1	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0451	TRUE	22	156	2	142	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ND1	3	2	MT-CO3	1434	chrM:9640:+	MT-ND1	4990	chrM:3512:+	INCL_NON_REF_SPLICE	NO	10619	3619	0	0	0.0338	0.0225	LOCAL_REARRANGEMENT:+:[4945],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0563	FALSE	12	48	6	3	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	1	EIF1	1103	chr17:39845239:+	RPS28	8148	chr19:8386405:+	INCL_NON_REF_SPLICE	YES	1007	0	0	1	0.0338	0.0113	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0451	FALSE	0	0	0	81	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	1	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	12	0	0.25	1	0.0338	0.0113	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0451	TRUE	0	0	0	81	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LDB1--EEF1A1P5	3	0	LDB1	4917	chr10:103870286:-	EEF1A1P5	12183	chr9:135896112:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LDB1->LIM_domain_binding_1,Oncogene{Bushman},chr10:103867317-103880210:-,EEF1A1P5->chr9:135894816-135896553:+,eukaryotic_translation_elongation_factor_1_alpha_1_pseudogene_5	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	TRUE	0	0	0	1	0	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1134	chrM:8660:+	MT-CO1	5163	chrM:6385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	FALSE	183	104	9	328	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1130	chrM:8656:+	MT-CO1	5092	chrM:6314:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	FALSE	183	104	9	328	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A5--ACTG1	3	0	SLC7A5	8068	chr16:87871474:-	ACTG1	21178	chr17:79478603:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	TRUE	0	0	0	11	0	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	2	1	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	NO	0	18	1	0.14	0.0225	0.0113	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.0338	FALSE	1	11	0	34	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC41--SLC16A1	2	0	CCDC41	6519	chr12:94801793:-	SLC16A1	33780	chr1:113471974:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	CCDC41->chr12:94700225-94853764:-,SLC16A1->Oncogene{Bushman},chr1:113454469-113499635:-,solute_carrier_family_16_member_1	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPRIP--PSMB1	2	0	MPRIP	4886	chr17:16981390:+	PSMB1	52877	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTC7B--CCNK	2	0	TTC7B	22197	chr14:91084273:-	CCNK	40537	chr14:99961835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TTC7B->chr14:91006932-91282823:-,tetratricopeptide_repeat_domain_7B,CCNK->chr14:99947506-100001381:+,cyclin_K	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFAND6--RACGAP1	2	0	ZFAND6	12986	chr15:80415142:+	RACGAP1	39438	chr12:50386438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	ZFAND6->chr15:80351910-80430735:+,zinc_finger_AN1-type_containing_6,RACGAP1->Rac_GTPase_activating_protein_1,chr12:50370706-50426919:-	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0113	0.0225	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	FALSE	407	2205	196	549	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG5--PRKCB	1	1	SNHG5	1939	chr6:86387513:-	PRKCB	36735	chr16:24231282:+	ONLY_REF_SPLICE	YES	1631	381	0	0.01	0.0113	0.0113	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,PRKCB->chr16:23847322-24231932:+,protein_kinase_C_beta	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000301
LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBB--MRPS18B	1	1	TUBB	1363	chr6:30688340:+	MRPS18B	10452	chr6:30587270:+	ONLY_REF_SPLICE	YES	2486	28	0	0.07	0.0113	0.0113	LOCAL_REARRANGEMENT:+:[93806],TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I,MRPS18B->chr6:30585486-30594172:+,mitochondrial_ribosomal_protein_S18B	LAMA84_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.07	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000301
LI7_LIVER	SRGAP1--TMEM5	143	27	SRGAP1	1591	chr12:64238663:+	TMEM5	36592	chr12:64174799:+	ONLY_REF_SPLICE	YES	29	122	0.85	0.58	1.9948	0.3766	LOCAL_REARRANGEMENT:+:[34735],SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,TMEM5->chr12:64173583-64203338:+,transmembrane_protein_5	LI7_LIVER	0.58	0.85	2.3714	TRUE	0	1	0	1	1	TRUE	ACH-000471
LI7_LIVER	SAMM50--BPIFB4	116	45	SAMM50	3607	chr22:44360433:+	BPIFB4	38777	chr20:31688232:+	ONLY_REF_SPLICE	YES	32	0	0.83	1	1.6182	0.6277	SAMM50->SAMM50_sorting_and_assembly_machinery_component,chr22:44351301-44406411:+,BPIFB4->BPI_fold_containing_family_B_member_4,chr20:31667450-31699557:+	LI7_LIVER	0.83	1	2.2459	TRUE	0	0	0	1	0	TRUE	ACH-000471
LI7_LIVER	TIMM23B--LINC00843	79	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.102	0.1813	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LI7_LIVER	1	1	1.2833	TRUE	508	994	45	981	0	FALSE	ACH-000471
LI7_LIVER	MT-TA--MT-TC	43	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5998	0.0418	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LI7_LIVER	1	1	0.6416	FALSE	462	80	0	856	0	FALSE	ACH-000471
LI7_LIVER	TIMM23--RP11-464F9.1	36	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	239	2	0.14	0.95	0.5022	0.0418	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LI7_LIVER	0.14	0.95	0.544	TRUE	519	3926	326	965	0	FALSE	ACH-000471
LI7_LIVER	C15orf57--CBX3	20	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	49	9	0.4	0.78	0.279	0.1674	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LI7_LIVER	0.4	0.78	0.4464	TRUE	267	562	48	632	0	FALSE	ACH-000471
LI7_LIVER	C15orf57--CBX3	19	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	49	8	0.4	0.8	0.265	0.1813	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LI7_LIVER	0.4	0.8	0.4463	TRUE	267	562	48	632	0	FALSE	ACH-000471
LI7_LIVER	ZNF654--HMGB2	22	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3069	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LI7_LIVER	1	1	0.3069	TRUE	0	0	0	518	0	FALSE	ACH-000471
LI7_LIVER	PPFIA1--SHANK2	18	10	PPFIA1	6154	chr11:70172924:+	SHANK2	84446	chr11:70412729:-	ONLY_REF_SPLICE	YES	251	14	0.1	0.67	0.2511	0.1395	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[83452],PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	LI7_LIVER	0.1	0.67	0.3906	TRUE	0	0	0	1	0	TRUE	ACH-000471
LI7_LIVER	SHANK2--CTTN	15	7	SHANK2	36719	chr11:70505933:-	CTTN	76358	chr11:70271438:+	ONLY_REF_SPLICE	YES	12	1552	0.65	0.01	0.2092	0.0976	LOCAL_INVERSION:-:+:[31271],SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin	LI7_LIVER	0.01	0.65	0.3068	TRUE	1	0	0	1	0	FALSE	ACH-000471
LI7_LIVER	MT-ND6--MT-TE	12	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1674	0.2371	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LI7_LIVER	0.97	1	0.4045	FALSE	499	1288	110	792	0	FALSE	ACH-000471
LI7_LIVER	CTD-2337A12.1--CAST	11	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	99	1	0.12	0.1534	0.0279	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	LI7_LIVER	0.12	1	0.1813	TRUE	347	1186	183	220	0	FALSE	ACH-000471
LI7_LIVER	MT-TA--MT-TC	11	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1534	0.0279	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LI7_LIVER	1	1	0.1813	FALSE	462	80	0	856	0	FALSE	ACH-000471
LI7_LIVER	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1534	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LI7_LIVER	1	1	0.1534	TRUE	0	0	0	434	0	FALSE	ACH-000471
LI7_LIVER	NRIP1--AF127936.7	9	6	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.68	1	0.1255	0.0837	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LI7_LIVER	0.68	1	0.2092	FALSE	292	1546	117	613	0	FALSE	ACH-000471
LI7_LIVER	MT-ND6--MT-TE	8	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1116	0.0558	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LI7_LIVER	1	1	0.1674	FALSE	499	1288	110	792	0	FALSE	ACH-000471
LI7_LIVER	RP11-680G10.1--GSE1	8	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.82	0.1116	0.0139	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LI7_LIVER	0.82	1	0.1255	TRUE	458	1351	185	561	0	FALSE	ACH-000471
LI7_LIVER	MT-ND6--MT-TE	7	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0976	0.0558	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LI7_LIVER	1	1	0.1534	FALSE	499	1288	110	792	0	FALSE	ACH-000471
LI7_LIVER	RP11-680G10.1--GSE1	7	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	45	1	0.15	0.0976	0.0139	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LI7_LIVER	0.15	1	0.1115	TRUE	465	1949	224	605	0	FALSE	ACH-000471
LI7_LIVER	RP11-96H19.1--RP11-446N19.1	6	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0837	0.0697	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LI7_LIVER	1	1	0.1534	FALSE	515	4851	409	746	0	FALSE	ACH-000471
LI7_LIVER	SHANK2--ANO1-AS2	7	1	SHANK2	36719	chr11:70505933:-	ANO1-AS2	64081	chr11:69919045:-	ONLY_REF_SPLICE	YES	12	0	0.4	1	0.0976	0.0139	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,ANO1-AS2->ANO1_antisense_RNA_2_(head_to_head),chr11:69918540-69921539:-	LI7_LIVER	0.4	1	0.1115	TRUE	0	0	0	1	0	TRUE	ACH-000471
LI7_LIVER	MT-ND6--MT-TE	3	15	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0.2092	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LI7_LIVER	1	1	0.251	FALSE	499	1288	110	792	0	FALSE	ACH-000471
LI7_LIVER	CALM3--MT-ND4L	6	1	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1258	0	0.01	1	0.0837	0.0139	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LI7_LIVER	0.01	1	0.0976	FALSE	1	1	0	107	0	FALSE	ACH-000471
LI7_LIVER	MT-ND5--MT-ND6	4	7	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	2757	1	0	0.0558	0.0976	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	LI7_LIVER	0	1	0.1534	FALSE	26	124	4	93	0	FALSE	ACH-000471
LI7_LIVER	RP11-108K3.1--GLDN	4	6	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0558	0.0837	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	LI7_LIVER	1	1	0.1395	FALSE	0	19	0	46	0	FALSE	ACH-000471
LI7_LIVER	RP11-254I22.1--CTD-2337A12.1	5	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0697	0.0139	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	LI7_LIVER	1	1	0.0836	TRUE	6	15	3	35	0	FALSE	ACH-000471
LI7_LIVER	SRGAP1--TMEM5	4	4	SRGAP1	1591	chr12:64238663:+	TMEM5	38912	chr12:64178750:+	ONLY_REF_SPLICE	YES	29	112	0.22	0.07	0.0558	0.0558	LOCAL_REARRANGEMENT:+:[34735],SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,TMEM5->chr12:64173583-64203338:+,transmembrane_protein_5	LI7_LIVER	0.07	0.22	0.1116	TRUE	0	0	0	1	0	TRUE	ACH-000471
LI7_LIVER	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0.0837	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LI7_LIVER	1	1	0.1255	FALSE	407	2205	196	549	0	FALSE	ACH-000471
LI7_LIVER	SRGAP1--TMEM5	4	1	SRGAP1	1591	chr12:64238663:+	TMEM5	41567	chr12:64195871:+	ONLY_REF_SPLICE	YES	29	101	0.15	0.05	0.0558	0.0139	LOCAL_REARRANGEMENT:+:[34735],SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,TMEM5->chr12:64173583-64203338:+,transmembrane_protein_5	LI7_LIVER	0.05	0.15	0.0697	TRUE	0	0	0	1	0	TRUE	ACH-000471
LI7_LIVER	NRIP1--AF127936.7	2	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.44	1	0.0279	0.0837	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LI7_LIVER	0.44	1	0.1116	FALSE	125	705	46	456	0	FALSE	ACH-000471
LI7_LIVER	RP11-108K3.1--GLDN	2	4	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0.0558	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	LI7_LIVER	1	1	0.0837	FALSE	0	30	1	55	0	FALSE	ACH-000471
LI7_LIVER	RP11-120D5.1--MID1	3	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0418	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LI7_LIVER	1	1	0.0418	FALSE	16	356	14	466	0	FALSE	ACH-000471
LI7_LIVER	NRIP1--AF127936.7	1	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	21	0	0.25	1	0.0139	0.0837	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LI7_LIVER	0.25	1	0.0976	FALSE	164	806	69	479	0	FALSE	ACH-000471
LI7_LIVER	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0139	0.0837	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LI7_LIVER	1	1	0.0976	FALSE	192	492	57	212	0	FALSE	ACH-000471
LI7_LIVER	CTD-2337A12.1--CAST	2	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	129	1	0.02	0.0279	0.0139	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	LI7_LIVER	0.02	1	0.0418	TRUE	15	36	8	26	0	FALSE	ACH-000471
LI7_LIVER	GPHN--MPP5	2	1	GPHN	16426	chr14:67432042:+	MPP5	46787	chr14:67759228:+	ONLY_REF_SPLICE	YES	9	32	0.25	0.09	0.0279	0.0139	NEIGHBORS[59306],GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin,MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5	LI7_LIVER	0.09	0.25	0.0418	FALSE	0	0	0	1	0	FALSE	ACH-000471
LI7_LIVER	RP11-254I22.1--CTD-2337A12.1	2	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	7741	chr5:95644428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0.0139	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	LI7_LIVER	1	1	0.0418	TRUE	1	1	0	7	1	FALSE	ACH-000471
LI7_LIVER	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0.0697	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LI7_LIVER	1	1	0.0836	FALSE	467	2173	244	435	0	FALSE	ACH-000471
LI7_LIVER	POMP--LDHB	2	0	POMP	1084	chr13:29233324:+	LDHB	20469	chr12:21791404:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	POMP->chr13:29233241-29253062:+,proteasome_maturation_protein,LDHB->chr12:21788276-21910791:-,lactate_dehydrogenase_B	LI7_LIVER	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000471
LI7_LIVER	RP11-108K3.1--GLDN	1	4	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0139	0.0558	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	LI7_LIVER	0.83	1	0.0697	FALSE	0	14	0	30	0	FALSE	ACH-000471
LI7_LIVER	RP11-254I22.1--CTD-2337A12.1	2	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	LI7_LIVER	1	1	0.0279	TRUE	0	2	1	13	0	FALSE	ACH-000471
LI7_LIVER	TCFL5--YTHDF1	2	0	TCFL5	2639	chr20:61491477:-	YTHDF1	19165	chr20:61828086:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	TCFL5->chr20:61472467-61493115:-,transcription_factor_like_5,YTHDF1->YTH_N6-methyladenosine_RNA_binding_protein_1,chr20:61826781-61847586:-	LI7_LIVER	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000471
LI7_LIVER	ZNF217--PICALM	2	0	ZNF217	3627	chr20:52214170:-	PICALM	20656	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0279	0	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	LI7_LIVER	1	1	0.0279	TRUE	0	0	0	1	0	TRUE	ACH-000471
LI7_LIVER	NRIP1--AF127936.7	1	2	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	10	4	0.23	0.43	0.0139	0.0279	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LI7_LIVER	0.23	0.43	0.0418	FALSE	7	44	2	41	0	FALSE	ACH-000471
LI7_LIVER	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	NO	0	1	1	0.75	0.0139	0.0279	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	LI7_LIVER	0.75	1	0.0418	FALSE	1	20	0	46	0	FALSE	ACH-000471
LI7_LIVER	APBB2--RBM47	1	1	APBB2	21411	chr4:40892381:-	RBM47	49097	chr4:40468716:-	ONLY_REF_SPLICE	YES	23	74	0.08	0.03	0.0139	0.0139	APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-,RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-	LI7_LIVER	0.03	0.08	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000471
LI7_LIVER	LAMC1--DHX9	1	1	LAMC1	25543	chr1:183106962:+	DHX9	45388	chr1:182835579:+	ONLY_REF_SPLICE	YES	228	183	0.01	0.01	0.0139	0.0139	LAMC1->chr1:182992595-183114727:+,laminin_subunit_gamma_1,DHX9->DEAH-box_helicase_9,Oncogene{Bushman},chr1:182808504-182856886:+	LI7_LIVER	0.01	0.01	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000471
LI7_LIVER	PPP1R13B--C14orf2	1	1	PPP1R13B	7277	chr14:104245082:-	C14orf2	34646	chr14:104381526:-	ONLY_REF_SPLICE	YES	31	6	0.06	0.25	0.0139	0.0139	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_REARRANGEMENT:-:[64698],PPP1R13B->chr14:104200089-104313927:-,protein_phosphatase_1_regulatory_subunit_13B,C14orf2->chr14:104378625-104394606:-,chromosome_14_open_reading_frame_2	LI7_LIVER	0.06	0.25	0.0278	TRUE	1	0	0	2	0	TRUE	ACH-000471
LI7_LIVER	PRR5--RABL6	1	1	PRR5	2353	chr22:45073120:+	RABL6	22471	chr9:139717977:+	ONLY_REF_SPLICE	YES	27	124	0.07	0.02	0.0139	0.0139	PRR5->chr22:45064593-45133561:+,proline_rich_5,RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+	LI7_LIVER	0.02	0.07	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000471
LI7_LIVER	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	58	1	0.03	0.0139	0.0139	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LI7_LIVER	0.03	1	0.0278	TRUE	64	13	3	59	0	FALSE	ACH-000471
LI7_LIVER	SHANK2--ANO1-AS2	1	1	SHANK2	30935	chr11:70544793:-	ANO1-AS2	64081	chr11:69919045:-	ONLY_REF_SPLICE	YES	25	0	0.07	1	0.0139	0.0139	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,ANO1-AS2->ANO1_antisense_RNA_2_(head_to_head),chr11:69918540-69921539:-	LI7_LIVER	0.07	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000471
HS618T_FIBROBLAST	MT-ATP6--MT-CO2	152	4	MT-ATP6	1408	chrM:8934:+	MT-CO2	5049	chrM:7953:+	INCL_NON_REF_SPLICE	YES	62	4	0.72	0.97	1.7387	0.0458	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS618T_FIBROBLAST	0.72	0.97	1.7845	FALSE	59	21	0	114	0	FALSE	ACH-000539
HS618T_FIBROBLAST	TIMM23B--LINC00843	103	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1782	0.366	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS618T_FIBROBLAST	1	1	1.5442	TRUE	508	994	45	981	0	FALSE	ACH-000539
HS618T_FIBROBLAST	COL1A1--COL6A1	77	2	COL1A1	6491	chr17:48273284:-	COL6A1	32210	chr21:47414081:+	ONLY_REF_SPLICE	NO	6745	1327	0.01	0.06	0.8808	0.0229	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS618T_FIBROBLAST	0.01	0.06	0.9037	TRUE	0	1	0	5	0	FALSE	ACH-000539
HS618T_FIBROBLAST	TIMM23--RP11-464F9.1	59	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	281	0	0.19	1	0.6749	0.0686	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS618T_FIBROBLAST	0.19	1	0.7435	TRUE	519	3926	326	965	0	FALSE	ACH-000539
HS618T_FIBROBLAST	RP11-680G10.1--GSE1	47	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	14	1	0.79	0.5376	0.0572	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS618T_FIBROBLAST	0.79	1	0.5948	TRUE	465	1949	224	605	0	FALSE	ACH-000539
HS618T_FIBROBLAST	OR51S1--TP53I11	41	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.469	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HS618T_FIBROBLAST	1	1	0.469	TRUE	402	216	10	229	0	FALSE	ACH-000539
HS618T_FIBROBLAST	RP11-680G10.1--GSE1	37	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4232	0.1144	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS618T_FIBROBLAST	1	1	0.5376	TRUE	458	1351	185	561	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND5--MT-ATP8	33	7	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2004	9	0.02	0.82	0.3775	0.0801	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0.02	0.82	0.4576	FALSE	43	37	8	105	0	FALSE	ACH-000539
HS618T_FIBROBLAST	PLXDC1--TAF13	25	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.286	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS618T_FIBROBLAST	1	1	0.286	TRUE	7	10	0	216	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MIPEPP3--ABHD12	23	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2631	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	HS618T_FIBROBLAST	1	1	0.2631	TRUE	64	202	9	44	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND5--MT-ATP8	19	15	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	8	0	0.81	1	0.2173	0.1716	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0.81	1	0.3889	FALSE	43	37	8	105	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND6--MT-TE	20	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2288	0.0229	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS618T_FIBROBLAST	1	1	0.2517	FALSE	499	1288	110	792	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND6--MT-TE	14	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1601	0.0801	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS618T_FIBROBLAST	0.95	1	0.2402	FALSE	499	1288	110	792	0	FALSE	ACH-000539
HS618T_FIBROBLAST	RP11-444D3.1--SOX5	13	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1487	0.0572	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS618T_FIBROBLAST	1	1	0.2059	TRUE	477	1352	189	275	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND4--MT-ATP8	14	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1601	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	1	1	0.1601	FALSE	230	193	14	283	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND5--MT-ATP8	6	20	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0.2288	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	1	1	0.2974	FALSE	43	37	8	105	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ATP6--MT-CO2	10	2	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	51	15	0.19	0.44	0.1144	0.0229	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS618T_FIBROBLAST	0.19	0.44	0.1373	FALSE	59	21	0	114	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND4--MT-ATP8	10	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11941	9	0	0.55	0.1144	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0	0.55	0.1258	FALSE	231	205	14	283	0	FALSE	ACH-000539
HS618T_FIBROBLAST	VIM-AS1--PLEC	10	1	VIM-AS1	1699	chr10:17271286:-	PLEC	35963	chr8:144999221:-	INCL_NON_REF_SPLICE	YES	1	291	0.92	0.04	0.1144	0.0114	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,PLEC->chr8:144989321-145050902:-,plectin	HS618T_FIBROBLAST	0.04	0.92	0.1258	TRUE	0	0	0	1	0	TRUE	ACH-000539
HS618T_FIBROBLAST	MT-ND4--MT-ATP8	9	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13289	0	0	1	0.1029	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0	1	0.1487	FALSE	231	217	16	283	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND4--MT-ATP8	10	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1144	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	1	1	0.1144	FALSE	230	198	14	283	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ATP6--MT-CO2	9	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	52	19	0.17	0.37	0.1029	0.0229	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS618T_FIBROBLAST	0.17	0.37	0.1258	FALSE	59	21	0	114	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND5--MT-ATP8	6	10	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	8	548	0.67	0.03	0.0686	0.1144	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0.03	0.67	0.183	FALSE	43	37	8	105	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND5--MT-ATP8	4	18	MT-ND5	2835	chrM:14171:+	MT-ATP8	5865	chrM:8418:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0.2059	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	1	1	0.2517	FALSE	43	37	8	105	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND5--MT-ATP8	7	5	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5195	66	0	0.15	0.0801	0.0572	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0	0.15	0.1373	FALSE	43	37	8	105	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND4--MT-ATP8	8	0	MT-ND4	1195	chrM:10954:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0915	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	1	1	0.0915	FALSE	230	193	14	283	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND6--MT-TE	7	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0801	0.0229	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS618T_FIBROBLAST	1	1	0.103	FALSE	499	1288	110	792	0	FALSE	ACH-000539
HS618T_FIBROBLAST	COL1A1--NPM1	6	5	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	5835	4	0	0.73	0.0686	0.0572	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HS618T_FIBROBLAST	0	0.73	0.1258	TRUE	0	0	0	31	0	FALSE	ACH-000539
HS618T_FIBROBLAST	FTH1--ACTB	7	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0801	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS618T_FIBROBLAST	1	1	0.0801	TRUE	1	0	0	97	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-TA--MT-TC	7	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0801	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS618T_FIBROBLAST	1	1	0.0801	FALSE	462	80	0	856	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND6--MT-TE	4	11	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0458	0.1258	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS618T_FIBROBLAST	0.94	1	0.1716	FALSE	499	1288	110	792	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ATP6--MT-CO2	6	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	40	16	0.17	0.33	0.0686	0.0229	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS618T_FIBROBLAST	0.17	0.33	0.0915	FALSE	59	21	0	114	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ATP6--MT-CO2	6	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	52	17	0.13	0.32	0.0686	0.0229	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS618T_FIBROBLAST	0.13	0.32	0.0915	FALSE	59	21	0	114	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND5--MT-ATP8	3	14	MT-ND5	2648	chrM:13984:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	1555	0	0.01	1	0.0343	0.1601	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0.01	1	0.1944	FALSE	43	37	8	105	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND4--MT-ATP8	6	1	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	13802	1545	0	0	0.0686	0.0114	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0	0	0.08	FALSE	231	205	14	283	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND5--MT-ATP8	4	9	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	2504	0	0.01	1	0.0458	0.1029	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0.01	1	0.1487	FALSE	43	37	8	105	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ATP6--MT-CO1	6	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0686	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS618T_FIBROBLAST	1	1	0.0686	FALSE	183	104	9	328	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND5--MT-ATP8	3	12	MT-ND5	2243	chrM:13579:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	2004	0	0.01	1	0.0343	0.1373	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0.01	1	0.1716	FALSE	43	37	8	105	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND6--MT-TE	4	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0.0915	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS618T_FIBROBLAST	1	1	0.1373	FALSE	499	1288	110	792	0	FALSE	ACH-000539
HS618T_FIBROBLAST	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0686	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS618T_FIBROBLAST	1	1	0.0686	FALSE	292	1546	117	613	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ATP6--MT-CO2	5	2	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	NO	21	12	0.25	0.37	0.0572	0.0229	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS618T_FIBROBLAST	0.25	0.37	0.0801	FALSE	59	21	0	114	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND4--MT-ATP8	5	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	13235	0	0	1	0.0572	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0	1	0.0801	FALSE	231	205	14	283	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND5--MT-TL2	3	10	MT-ND5	1110	chrM:12446:+	MT-TL2	5833	chrM:12286:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0.1144	LOCAL_REARRANGEMENT:+:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-TL2->chrM:12266-12336:+,mitochondrially_encoded_tRNA_leucine_2_(CUN)	HS618T_FIBROBLAST	1	1	0.1487	FALSE	3	9	1	5	0	FALSE	ACH-000539
HS618T_FIBROBLAST	PRR16--CTD-2334D19.1	4	6	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	36	0	0.22	1	0.0458	0.0686	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS618T_FIBROBLAST	0.22	1	0.1144	FALSE	21	45	1	60	0	FALSE	ACH-000539
HS618T_FIBROBLAST	IGFBP4--NPM1	5	1	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	1842	4	0	0.6	0.0572	0.0114	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HS618T_FIBROBLAST	0	0.6	0.0686	FALSE	0	0	0	38	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND4--MT-ATP8	4	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	11880	9	0	0.47	0.0458	0.0458	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0	0.47	0.0916	FALSE	231	217	16	283	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND5--MT-ATP8	3	8	MT-ND5	2851	chrM:14187:+	MT-ATP8	5954	chrM:8507:+	INCL_NON_REF_SPLICE	YES	0	1650	1	0.01	0.0343	0.0915	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0.01	1	0.1258	FALSE	43	37	8	105	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND4--MT-ATP8	3	7	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	11571	0	0	1	0.0343	0.0801	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0	1	0.1144	FALSE	231	217	16	283	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND4--MT-ATP8	4	3	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14033	65	0	0.1	0.0458	0.0343	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0	0.1	0.0801	FALSE	231	217	16	283	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND4--MT-ATP8	4	3	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	13990	0	0	1	0.0458	0.0343	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0	1	0.0801	FALSE	231	216	16	283	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND4--MT-ATP8	3	6	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	11454	0	0	1	0.0343	0.0686	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0	1	0.1029	FALSE	231	217	16	283	0	FALSE	ACH-000539
HS618T_FIBROBLAST	IGFBP4--NPM1	4	1	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	1909	5	0	0.5	0.0458	0.0114	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HS618T_FIBROBLAST	0	0.5	0.0572	FALSE	0	0	0	38	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND5--MT-ATP8	3	5	MT-ND5	1959	chrM:13295:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4230	0	0	1	0.0343	0.0572	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0	1	0.0915	FALSE	43	37	8	105	0	FALSE	ACH-000539
HS618T_FIBROBLAST	PRR16--CTD-2334D19.1	3	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	104	0	0.07	1	0.0343	0.0572	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS618T_FIBROBLAST	0.07	1	0.0915	FALSE	56	216	12	147	0	FALSE	ACH-000539
HS618T_FIBROBLAST	PTMA--PTMS	4	1	PTMA	6060	chr2:232576693:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	2072	462	0	0.01	0.0458	0.0114	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	HS618T_FIBROBLAST	0	0.01	0.0572	FALSE	0	0	0	16	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ATP6--MT-CO1	4	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS618T_FIBROBLAST	1	1	0.0458	FALSE	183	104	9	328	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	1	1	0.0458	FALSE	231	205	14	283	0	FALSE	ACH-000539
HS618T_FIBROBLAST	COL1A1--COL6A1	3	3	COL1A1	12405	chr17:48267370:-	COL6A1	33571	chr21:47417633:+	INCL_NON_REF_SPLICE	NO	6689	1081	0	0.01	0.0343	0.0343	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS618T_FIBROBLAST	0	0.01	0.0686	FALSE	0	6	0	4	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ATP6--MT-CO2	3	2	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	46	17	0.1	0.23	0.0343	0.0229	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS618T_FIBROBLAST	0.1	0.23	0.0572	FALSE	59	21	0	114	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ATP6--MT-CO2	3	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	21	12	0.19	0.29	0.0343	0.0229	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS618T_FIBROBLAST	0.19	0.29	0.0572	FALSE	59	21	0	114	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13677	65	0	0.07	0.0343	0.0229	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	0	0.07	0.0572	FALSE	231	217	16	283	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ATP6--MT-CO2	3	1	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	39	8	0.09	0.33	0.0343	0.0114	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HS618T_FIBROBLAST	0.09	0.33	0.0457	FALSE	59	21	0	114	0	FALSE	ACH-000539
HS618T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0343	0.0114	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS618T_FIBROBLAST	0.8	1	0.0457	FALSE	407	2205	196	549	0	FALSE	ACH-000539
HS618T_FIBROBLAST	ARHGDIA--MT-CO3	3	0	ARHGDIA	3700	chr17:79826583:-	MT-CO3	7752	chrM:9272:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HS618T_FIBROBLAST	1	1	0.0343	FALSE	0	0	0	6	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1176	chrM:8702:+	MT-CO1	4969	chrM:6191:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS618T_FIBROBLAST	1	1	0.0343	FALSE	183	103	9	328	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS618T_FIBROBLAST	1	1	0.0343	FALSE	183	104	9	328	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1144	chrM:10903:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS618T_FIBROBLAST	1	1	0.0343	FALSE	230	193	14	283	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MT-TA--MT-TC	3	0	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS618T_FIBROBLAST	1	1	0.0343	FALSE	462	80	0	856	0	FALSE	ACH-000539
HS618T_FIBROBLAST	NRIP1--AF127936.7	3	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS618T_FIBROBLAST	1	1	0.0343	FALSE	125	705	46	456	0	FALSE	ACH-000539
HS618T_FIBROBLAST	WTAPP1--RUVBL1	3	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0343	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	HS618T_FIBROBLAST	1	1	0.0343	TRUE	9	252	6	66	0	FALSE	ACH-000539
HS618T_FIBROBLAST	RP11-444D3.1--SOX5	1	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	13900	chr12:24102595:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0114	0.0686	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS618T_FIBROBLAST	1	1	0.08	TRUE	8	10	1	12	0	FALSE	ACH-000539
HS618T_FIBROBLAST	RP11-444D3.1--SOX5	1	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0114	0.0686	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS618T_FIBROBLAST	1	1	0.08	TRUE	160	277	29	98	0	FALSE	ACH-000539
HS618T_FIBROBLAST	COL1A1--COL6A1	2	1	COL1A1	4465	chr17:48275310:-	COL6A1	29378	chr21:47410893:+	ONLY_REF_SPLICE	NO	4951	412	0	0.01	0.0229	0.0114	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS618T_FIBROBLAST	0	0.01	0.0343	FALSE	0	3	0	2	0	FALSE	ACH-000539
HS618T_FIBROBLAST	PRR16--CTD-2334D19.1	1	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	104	0	0.05	1	0.0114	0.0572	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS618T_FIBROBLAST	0.05	1	0.0686	FALSE	1	13	0	24	0	FALSE	ACH-000539
HS618T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.6	0.75	0.0229	0.0114	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS618T_FIBROBLAST	0.6	0.75	0.0343	FALSE	467	2173	244	435	0	FALSE	ACH-000539
HS618T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.75	0.75	0.0229	0.0114	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS618T_FIBROBLAST	0.75	0.75	0.0343	FALSE	515	4851	409	746	0	FALSE	ACH-000539
HS618T_FIBROBLAST	CTC-786C10.1--GSE1	1	4	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	YES	4	14	0.56	0.26	0.0114	0.0458	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS618T_FIBROBLAST	0.26	0.56	0.0572	TRUE	2	3	0	21	0	FALSE	ACH-000539
HS618T_FIBROBLAST	GLUD1P3--VCL	2	0	GLUD1P3	1312	chr10:75490631:+	VCL	8593	chr10:75802841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	GLUD1P3->chr10:75490320-75497069:+,glutamate_dehydrogenase_1_pseudogene_3,VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin	HS618T_FIBROBLAST	1	1	0.0229	TRUE	0	0	0	3	0	TRUE	ACH-000539
HS618T_FIBROBLAST	RP11-166D19.1--WDR19	2	0	RP11-166D19.1	5868	chr11:121971082:-	WDR19	33016	chr4:39226504:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	RP11-166D19.1->chr11:121899063-121987031:-,WDR19->WD_repeat_domain_19,chr4:39184024-39287430:+	HS618T_FIBROBLAST	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000539
HS618T_FIBROBLAST	SP140L--SFPQ	2	0	SP140L	2193	chr2:231193546:+	SFPQ	38811	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0229	0	SP140L->SP140_nuclear_body_protein_like,chr2:231191899-231268447:+,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	HS618T_FIBROBLAST	1	1	0.0229	TRUE	0	0	0	1	0	TRUE	ACH-000539
HS618T_FIBROBLAST	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	26	0	0.1	1	0.0114	0.0229	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS618T_FIBROBLAST	0.1	1	0.0343	FALSE	164	806	69	479	0	FALSE	ACH-000539
HS618T_FIBROBLAST	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0114	0.0229	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS618T_FIBROBLAST	1	1	0.0343	TRUE	274	363	69	150	0	FALSE	ACH-000539
HS618T_FIBROBLAST	DNAJC25--UGCG	1	1	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	NO	133	72	0.01	0.03	0.0114	0.0114	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	HS618T_FIBROBLAST	0.01	0.03	0.0228	FALSE	50	73	10	50	0	FALSE	ACH-000539
HS618T_FIBROBLAST	MIR29B1--MKLN1	1	1	MIR29B1	2201	chr7:130596869:-	MKLN1	19035	chr7:131060183:+	ONLY_REF_SPLICE	YES	28	46	0.07	0.04	0.0114	0.0114	MIR29B1->chr7:130561495-130598069:-,microRNA_29b-1,MKLN1->chr7:130794855-131181395:+,muskelin_1	HS618T_FIBROBLAST	0.04	0.07	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000539
NIHOVCAR3_OVARY	SLC25A44--DAP3	229	125	SLC25A44	1159	chr1:156164038:+	DAP3	17521	chr1:155679564:+	ONLY_REF_SPLICE	YES	34	91	0.91	0.8	2.889	1.577	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	NIHOVCAR3_OVARY	0.8	0.91	4.466	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MBP--RP11-723G8.2	151	123	MBP	10678	chr18:74778254:-	RP11-723G8.2	43134	chr18:69400083:-	ONLY_REF_SPLICE	YES	73	0	0.79	1	1.905	1.5517	MBP->chr18:74690783-74845639:-,myelin_basic_protein,RP11-723G8.2->chr18:69399851-69455364:-	NIHOVCAR3_OVARY	0.79	1	3.4567	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	KANSL1--ARL17B	89	72	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	24	34	0.87	0.83	1.1228	0.9083	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NIHOVCAR3_OVARY	0.83	0.87	2.0311	TRUE	181	1564	124	196	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	TIMM23B--LINC00843	85	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0723	0.3911	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NIHOVCAR3_OVARY	1	1	1.4634	TRUE	508	994	45	981	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	FCHSD2--FAM168A	63	25	FCHSD2	16460	chr11:72598515:-	FAM168A	29774	chr11:73179537:-	ONLY_REF_SPLICE	YES	23	71	0.79	0.55	0.7948	0.3154	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A	NIHOVCAR3_OVARY	0.55	0.79	1.1102	TRUE	0	1	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	CCDC6--ANK3	56	32	CCDC6	1535	chr10:61665880:-	ANK3	50361	chr10:61898845:-	ONLY_REF_SPLICE	YES	179	15	0.33	0.85	0.7065	0.4037	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	NIHOVCAR3_OVARY	0.33	0.85	1.1102	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	SLC25A44--DAP3	20	127	SLC25A44	1159	chr1:156164038:+	DAP3	16781	chr1:155678824:+	ONLY_REF_SPLICE	YES	34	71	0.81	0.67	0.2523	1.6022	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	NIHOVCAR3_OVARY	0.67	0.81	1.8545	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	SVIL--MPP7	45	26	SVIL	5350	chr10:29946898:-	MPP7	72068	chr10:28378770:-	ONLY_REF_SPLICE	YES	25	18	0.74	0.8	0.5677	0.328	SVIL->chr10:29746267-30025710:-,supervillin,MPP7->chr10:28339922-28623415:-,membrane_palmitoylated_protein_7	NIHOVCAR3_OVARY	0.74	0.8	0.8957	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	STARD10--FCHSD2	44	19	STARD10	6569	chr11:72492020:-	FCHSD2	27315	chr11:72613683:-	ONLY_REF_SPLICE	YES	50	61	0.56	0.51	0.5551	0.2397	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[43064],STARD10->StAR_related_lipid_transfer_domain_containing_10,chr11:72465774-72504726:-,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	NIHOVCAR3_OVARY	0.51	0.56	0.7948	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	EWSR1--ZNRF3	41	27	EWSR1	4997	chr22:29669853:+	ZNRF3	27691	chr22:29383064:+	ONLY_REF_SPLICE	YES	458	9	0.13	0.88	0.5172	0.3406	EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3	NIHOVCAR3_OVARY	0.13	0.88	0.8578	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	TIMM23--RP11-464F9.1	44	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	286	4	0.14	0.92	0.5551	0.0252	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NIHOVCAR3_OVARY	0.14	0.92	0.5803	TRUE	519	3926	326	965	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	SLC38A1--COL2A1	39	14	SLC38A1	8733	chr12:46622936:-	COL2A1	51378	chr12:48373845:-	ONLY_REF_SPLICE	YES	269	1	0.16	0.98	0.492	0.1766	SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1,COL2A1->chr12:48366748-48398269:-,collagen_type_II_alpha_1	NIHOVCAR3_OVARY	0.16	0.98	0.6686	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	TSC2--MAPK8IP3	39	4	TSC2	1601	chr16:2098066:+	MAPK8IP3	49511	chr16:1808149:+	ONLY_REF_SPLICE	YES	0	25	1	0.63	0.492	0.0505	TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2,MAPK8IP3->chr16:1756184-1820318:+,mitogen-activated_protein_kinase_8_interacting_protein_3	NIHOVCAR3_OVARY	0.63	1	0.5425	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	SLC25A44--DAP3	2	100	SLC25A44	1159	chr1:156164038:+	DAP3	18573	chr1:155686797:+	ONLY_REF_SPLICE	YES	34	258	0.75	0.28	0.0252	1.2616	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	NIHOVCAR3_OVARY	0.28	0.75	1.2868	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	ITSN2--OTOF	22	17	ITSN2	2475	chr2:24550921:-	OTOF	57921	chr2:26739467:-	ONLY_REF_SPLICE	YES	9	0	0.81	1	0.2775	0.2145	ITSN2->chr2:24425733-24583583:-,intersectin_2,OTOF->Oncogene{Bushman},chr2:26680071-26781566:-,otoferlin	NIHOVCAR3_OVARY	0.81	1	0.492	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MT-ND4--MT-ND4L	4	77	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	10	1	0.89	0.99	0.0505	0.9714	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NIHOVCAR3_OVARY	0.89	0.99	1.0219	FALSE	344	826	44	306	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	FBXO34--CDKN3	17	18	FBXO34	1235	chr14:55738255:+	CDKN3	14353	chr14:54866612:+	ONLY_REF_SPLICE	YES	37	22	0.49	0.61	0.2145	0.2271	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3	NIHOVCAR3_OVARY	0.49	0.61	0.4416	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MT-ND4--MT-ND4L	7	53	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	1	0.97	0.98	0.0883	0.6686	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NIHOVCAR3_OVARY	0.97	0.98	0.7569	FALSE	344	821	44	306	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	NUP98--BEAN1	11	30	NUP98	1393	chr11:3818630:-	BEAN1	50933	chr16:66511463:+	ONLY_REF_SPLICE	YES	86	1	0.32	0.98	0.1388	0.3785	NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa,BEAN1->brain_expressed,_associated_with_NEDD4,_1,chr16:66461200-66527432:+	NIHOVCAR3_OVARY	0.32	0.98	0.5173	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	CACHD1--ROR1	15	13	CACHD1	28978	chr1:65145439:+	ROR1	41024	chr1:64516358:+	ONLY_REF_SPLICE	YES	13	4	0.68	0.88	0.1892	0.164	{Klijn_CCL:Breast=1,Ovary=1},CACHD1->cache_domain_containing_1,chr1:64936428-65158741:+,ROR1->chr1:64239693-64647181:+,receptor_tyrosine_kinase-like_orphan_receptor_1	NIHOVCAR3_OVARY	0.68	0.88	0.3532	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MT-ND6--MT-TE	18	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2271	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NIHOVCAR3_OVARY	1	1	0.2271	FALSE	499	1288	110	792	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	CAMTA1--KCNAB2	13	11	CAMTA1	4547	chr1:6885270:+	KCNAB2	51651	chr1:6100577:+	ONLY_REF_SPLICE	YES	327	5	0.07	0.83	0.164	0.1388	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+,KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2	NIHOVCAR3_OVARY	0.07	0.83	0.3028	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	SPEN--NEU1	12	14	SPEN	24484	chr1:16265371:+	NEU1	30525	chr6:31829227:-	ONLY_REF_SPLICE	YES	126	128	0.17	0.17	0.1514	0.1766	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,NEU1->chr6:31825436-31830683:-,neuraminidase_1_(lysosomal_sialidase)	NIHOVCAR3_OVARY	0.17	0.17	0.328	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	GIGYF2--EIF4E2	14	3	GIGYF2	35151	chr2:233675579:+	EIF4E2	68619	chr2:233438703:+	INCL_NON_REF_SPLICE	YES	47	38	0.27	0.31	0.1766	0.0378	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,EIF4E2->chr2:233414762-233448354:+,eukaryotic_translation_initiation_factor_4E_family_member_2	NIHOVCAR3_OVARY	0.27	0.31	0.2144	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	AP000769.1--FRMD8	13	0	AP000769.1	1075	chr11:65222802:+	FRMD8	11705	chr11:65167207:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.164	0	LOCAL_REARRANGEMENT:+:[41732],AP000769.1->chr11:65222728-65234028:+,FRMD8->FERM_domain_containing_8,Oncogene{Bushman},chr11:65154070-65180996:+	NIHOVCAR3_OVARY	1	1	0.164	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MSI2--RNF123	11	4	MSI2	25423	chr17:55674311:+	RNF123	52083	chr3:49734576:+	ONLY_REF_SPLICE	YES	104	38	0.13	0.28	0.1388	0.0505	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,RNF123->chr3:49726932-49758962:+,ring_finger_protein_123	NIHOVCAR3_OVARY	0.13	0.28	0.1893	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MT-ATP6--MT-CO1	11	4	MT-ATP6	1153	chrM:8679:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	11721	14452	0	0	0.1388	0.0505	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NIHOVCAR3_OVARY	0	0	0.1893	FALSE	183	104	9	328	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	OR51S1--TP53I11	12	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1514	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NIHOVCAR3_OVARY	1	1	0.1514	TRUE	402	216	10	229	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	RP11-534L20.5--EPHA2	10	3	RP11-534L20.5	1422	chr1:206677702:+	EPHA2	18460	chr1:16451485:-	INCL_NON_REF_SPLICE	YES	0	563	1	0.02	0.1262	0.0378	RP11-534L20.5->chr1:206677281-206677789:+,EPHA2->EPH_receptor_A2,Oncogene{Bushman},chr1:16450832-16482582:-	NIHOVCAR3_OVARY	0.02	1	0.164	TRUE	0	0	0	2	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	RP11-123O10.4--GRIP1	9	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1135	0.0631	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NIHOVCAR3_OVARY	1	1	0.1766	FALSE	416	2512	207	587	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	SPEN--NEU1	9	3	SPEN	23614	chr1:16264501:+	NEU1	30525	chr6:31829227:-	ONLY_REF_SPLICE	YES	80	128	0.13	0.09	0.1135	0.0378	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,NEU1->chr6:31825436-31830683:-,neuraminidase_1_(lysosomal_sialidase)	NIHOVCAR3_OVARY	0.09	0.13	0.1513	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	CCDC6--ANK3	1	33	CCDC6	3814	chr10:61592283:-	ANK3	33623	chr10:61973268:-	ONLY_REF_SPLICE	YES	231	6	0.13	0.85	0.0126	0.4163	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	NIHOVCAR3_OVARY	0.13	0.85	0.4289	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MT-ND6--MT-TE	9	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1135	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NIHOVCAR3_OVARY	1	1	0.1135	FALSE	499	1288	110	792	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	UBN1--UBALD1	8	4	UBN1	8794	chr16:4911103:+	UBALD1	26627	chr16:4660556:-	ONLY_REF_SPLICE	YES	21	40	0.36	0.23	0.1009	0.0505	UBN1->chr16:4896666-4932361:+,ubinuclein_1,UBALD1->UBA_like_domain_containing_1,chr16:4658884-4665028:-	NIHOVCAR3_OVARY	0.23	0.36	0.1514	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MT-ND4--MT-ND4L	3	21	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0378	0.2649	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NIHOVCAR3_OVARY	0.92	1	0.3027	FALSE	344	821	44	306	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	MT-ND5--MT-ND1	6	9	MT-ND5	2730	chrM:14066:+	MT-ND1	6031	chrM:3525:+	INCL_NON_REF_SPLICE	YES	10	6738	0.6	0	0.0757	0.1135	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[8075],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NIHOVCAR3_OVARY	0	0.6	0.1892	FALSE	7	3	0	4	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	RAB11FIP4--NF1	8	1	RAB11FIP4	6818	chr17:29815290:+	NF1	32870	chr17:29483001:+	ONLY_REF_SPLICE	YES	4	32	0.69	0.22	0.1009	0.0126	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[9508],RAB11FIP4->RAB11_family_interacting_protein_4,chr17:29718642-29865236:+,NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1	NIHOVCAR3_OVARY	0.22	0.69	0.1135	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	RARG--AAAS	6	7	RARG	5372	chr12:53621146:-	AAAS	18449	chr12:53714476:-	ONLY_REF_SPLICE	YES	59	136	0.18	0.09	0.0757	0.0883	LOCAL_REARRANGEMENT:-:[74476],RARG->Oncogene{Bushman},chr12:53604354-53626764:-,retinoic_acid_receptor_gamma,AAAS->aladin_WD_repeat_nucleoporin,chr12:53701240-53718648:-	NIHOVCAR3_OVARY	0.09	0.18	0.164	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	BCS1L--POLR1A	6	6	BCS1L	4916	chr2:219527402:+	POLR1A	20491	chr2:86297395:-	ONLY_REF_SPLICE	YES	66	43	0.15	0.22	0.0757	0.0757	BCS1L->BCS1_homolog,_ubiquinol-cytochrome_c_reductase_complex_chaperone,chr2:219523487-219528166:+,POLR1A->chr2:86247339-86333278:-,polymerase_(RNA)_I_subunit_A	NIHOVCAR3_OVARY	0.15	0.22	0.1514	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	ITSN2--OTOF	3	18	ITSN2	3497	chr2:24549529:-	OTOF	57921	chr2:26739467:-	ONLY_REF_SPLICE	YES	9	0	0.7	1	0.0378	0.2271	ITSN2->chr2:24425733-24583583:-,intersectin_2,OTOF->Oncogene{Bushman},chr2:26680071-26781566:-,otoferlin	NIHOVCAR3_OVARY	0.7	1	0.2649	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	CAMTA1--KCNAB2	4	13	CAMTA1	4547	chr1:6885270:+	KCNAB2	45646	chr1:6078695:+	ONLY_REF_SPLICE	YES	327	2	0.05	0.89	0.0505	0.164	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+,KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2	NIHOVCAR3_OVARY	0.05	0.89	0.2145	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	FAR2--MKX	7	0	FAR2	14495	chr12:29464883:+	MKX	32060	chr10:27964483:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0883	0	{Klijn_CCL:Ovary=1},FAR2->chr12:29302036-29493913:+,fatty_acyl-CoA_reductase_2,MKX->chr10:27961804-28034989:-,mohawk_homeobox	NIHOVCAR3_OVARY	1	1	0.0883	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MT-ATP6--MT-CO1	7	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0883	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NIHOVCAR3_OVARY	1	1	0.0883	FALSE	183	104	9	328	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	MT-ND3--MT-ATP8	7	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0883	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NIHOVCAR3_OVARY	1	1	0.0883	FALSE	351	233	23	137	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	TSC2--MAPK8IP3	6	4	TSC2	1601	chr16:2098066:+	MAPK8IP3	51321	chr16:1809959:+	ONLY_REF_SPLICE	YES	0	28	1	0.26	0.0757	0.0505	TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2,MAPK8IP3->chr16:1756184-1820318:+,mitogen-activated_protein_kinase_8_interacting_protein_3	NIHOVCAR3_OVARY	0.26	1	0.1262	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	TFEB--PGC	6	3	TFEB	1910	chr6:41703088:-	PGC	20468	chr6:41712546:-	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.0757	0.0378	LOCAL_REARRANGEMENT:-:[452],TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,PGC->chr6:41704449-41721847:-,progastricsin_(pepsinogen_C)	NIHOVCAR3_OVARY	0.75	1	0.1135	TRUE	0	1	0	1	1	TRUE	ACH-000001
NIHOVCAR3_OVARY	AC007956.1--JDP2	4	9	AC007956.1	1165	chr14:75179636:-	JDP2	9506	chr14:75904601:+	ONLY_REF_SPLICE	YES	38	10	0.25	0.57	0.0505	0.1135	AC007956.1->chr14:75158879-75179800:-,JDP2->Jun_dimerization_protein_2,Oncogene{Bushman},chr14:75894419-75940814:+	NIHOVCAR3_OVARY	0.25	0.57	0.164	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	KANSL1--ARL17B	1	21	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	56	34	0.28	0.39	0.0126	0.2649	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NIHOVCAR3_OVARY	0.28	0.39	0.2775	TRUE	105	90	7	93	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	FBXO34--CDKN3	2	16	FBXO34	1235	chr14:55738255:+	CDKN3	15436	chr14:54868242:+	ONLY_REF_SPLICE	YES	37	283	0.33	0.06	0.0252	0.2019	FBXO34->F-box_protein_34,chr14:55738021-55828636:+,CDKN3->Oncogene{Bushman},chr14:54863567-54886936:+,cyclin-dependent_kinase_inhibitor_3	NIHOVCAR3_OVARY	0.06	0.33	0.2271	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	IL1RAPL2--TCEAL3	5	4	IL1RAPL2	1737	chrX:103811732:+	TCEAL3	19300	chrX:102863532:+	ONLY_REF_SPLICE	YES	2	99	0.82	0.08	0.0631	0.0505	IL1RAPL2->chrX:103810996-105011822:+,interleukin_1_receptor_accessory_protein_like_2,TCEAL3->chrX:102862379-102884618:+,transcription_elongation_factor_A_like_3	NIHOVCAR3_OVARY	0.08	0.82	0.1136	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	RP11-973F15.1--RP11-94A24.1	5	4	RP11-973F15.1	3763	chr8:123682599:-	RP11-94A24.1	7870	chr8:123429261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0631	0.0505	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	NIHOVCAR3_OVARY	1	1	0.1136	TRUE	0	2	0	7	2	TRUE	ACH-000001
NIHOVCAR3_OVARY	SAMD8--DUSP13	6	0	SAMD8	5140	chr10:76924498:+	DUSP13	24725	chr10:76855553:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0757	0	{Klijn_CCL:Ovary=1},NEIGHBORS_OVERLAP:+:-:[9635],SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,DUSP13->chr10:76854192-76868979:-,dual_specificity_phosphatase_13	NIHOVCAR3_OVARY	1	1	0.0757	FALSE	0	0	0	2	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	MT-ND4--MT-ND4L	4	7	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	18	0	0.38	1	0.0505	0.0883	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NIHOVCAR3_OVARY	0.38	1	0.1388	FALSE	344	826	44	306	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	ROMO1--CEP250	4	7	ROMO1	1492	chr20:34287685:+	CEP250	11831	chr20:34053568:+	ONLY_REF_SPLICE	YES	552	20	0.02	0.35	0.0505	0.0883	ROMO1->chr20:34287194-34288906:+,reactive_oxygen_species_modulator_1,CEP250->centrosomal_protein_250,chr20:34042985-34099804:+	NIHOVCAR3_OVARY	0.02	0.35	0.1388	TRUE	0	0	0	1	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	C15orf57--CBX3	5	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	36	35	0.16	0.17	0.0631	0.0252	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NIHOVCAR3_OVARY	0.16	0.17	0.0883	TRUE	267	562	48	632	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	MT-ND5--MT-ND1	5	2	MT-ND5	1639	chrM:12975:+	MT-ND1	6110	chrM:3604:+	INCL_NON_REF_SPLICE	NO	2868	8595	0	0	0.0631	0.0252	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[8075],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NIHOVCAR3_OVARY	0	0	0.0883	FALSE	5	1	0	2	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	MT-ND4--MT-ND4L	4	4	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	64	0	0.11	1	0.0505	0.0505	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NIHOVCAR3_OVARY	0.11	1	0.101	FALSE	344	827	44	306	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	TEX2--PRICKLE2	4	4	TEX2	8557	chr17:62289934:-	PRICKLE2	31716	chr3:64184643:-	ONLY_REF_SPLICE	YES	31	1	0.21	0.89	0.0505	0.0505	TEX2->chr17:62224587-62340661:-,testis_expressed_2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	NIHOVCAR3_OVARY	0.21	0.89	0.101	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	SAMD8--DUSP13	4	3	SAMD8	5140	chr10:76924498:+	DUSP13	23551	chr10:76857643:-	ONLY_REF_SPLICE	YES	44	3	0.14	0.7	0.0505	0.0378	{Klijn_CCL:Ovary=1},NEIGHBORS_OVERLAP:+:-:[9635],SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,DUSP13->chr10:76854192-76868979:-,dual_specificity_phosphatase_13	NIHOVCAR3_OVARY	0.14	0.7	0.0883	FALSE	0	0	0	2	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	STARD10--FCHSD2	3	7	STARD10	6482	chr11:72492107:-	FCHSD2	27315	chr11:72613683:-	ONLY_REF_SPLICE	YES	27	61	0.27	0.14	0.0378	0.0883	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[43064],STARD10->StAR_related_lipid_transfer_domain_containing_10,chr11:72465774-72504726:-,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	NIHOVCAR3_OVARY	0.14	0.27	0.1261	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MT-ND4--MT-ND4L	4	1	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0505	0.0126	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NIHOVCAR3_OVARY	0.83	1	0.0631	FALSE	344	821	44	306	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	22	1	0.19	0.0505	0.0126	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NIHOVCAR3_OVARY	0.19	1	0.0631	TRUE	458	1351	185	561	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	SAMD8--DUSP13	3	5	SAMD8	5140	chr10:76924498:+	DUSP13	17329	chr10:76867967:-	ONLY_REF_SPLICE	YES	44	2	0.15	0.8	0.0378	0.0631	{Klijn_CCL:Ovary=1},NEIGHBORS_OVERLAP:+:-:[9635],SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,DUSP13->chr10:76854192-76868979:-,dual_specificity_phosphatase_13	NIHOVCAR3_OVARY	0.15	0.8	0.1009	FALSE	0	0	0	2	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	ZBTB17--SLC22A15	3	5	ZBTB17	2237	chr1:16299534:-	SLC22A15	15148	chr1:116534652:+	ONLY_REF_SPLICE	YES	68	2	0.11	0.8	0.0378	0.0631	ZBTB17->chr1:16268364-16302627:-,zinc_finger_and_BTB_domain_containing_17,SLC22A15->chr1:116519119-116612675:+,solute_carrier_family_22_member_15	NIHOVCAR3_OVARY	0.11	0.8	0.1009	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NIHOVCAR3_OVARY	1	1	0.0505	FALSE	344	821	44	306	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	MT-ND4--MT-ND4L	3	4	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	19	0	0.27	1	0.0378	0.0505	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NIHOVCAR3_OVARY	0.27	1	0.0883	FALSE	344	827	44	306	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	SAMD8--DUSP13	3	4	SAMD8	5140	chr10:76924498:+	DUSP13	19755	chr10:76863855:-	ONLY_REF_SPLICE	YES	44	4	0.14	0.64	0.0378	0.0505	{Klijn_CCL:Ovary=1},NEIGHBORS_OVERLAP:+:-:[9635],SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,DUSP13->chr10:76854192-76868979:-,dual_specificity_phosphatase_13	NIHOVCAR3_OVARY	0.14	0.64	0.0883	FALSE	0	0	0	2	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	XXbac-BPG252P9.9--KRT7	4	0	XXbac-BPG252P9.9	1428	chr6:30691227:-	KRT7	7019	chr12:52629083:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	XXbac-BPG252P9.9->chr6:30690882-30691654:-,KRT7->chr12:52626304-52645970:+,keratin_7	NIHOVCAR3_OVARY	1	1	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	CCDC6--ANK3	2	7	CCDC6	1535	chr10:61665880:-	ANK3	53035	chr10:61874089:-	ONLY_REF_SPLICE	YES	179	53	0.05	0.15	0.0252	0.0883	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	NIHOVCAR3_OVARY	0.05	0.15	0.1135	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	FAM179A--BRE	2	7	FAM179A	1087	chr2:29179563:+	BRE	58424	chr2:28532949:+	ONLY_REF_SPLICE	YES	2	42	0.82	0.18	0.0252	0.0883	FAM179A->chr2:29179477-29284239:+,family_with_sequence_similarity_179_member_A,BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+	NIHOVCAR3_OVARY	0.18	0.82	0.1135	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MT-ND4--MT-ND4L	3	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0.0378	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NIHOVCAR3_OVARY	1	1	0.0756	FALSE	344	821	44	306	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	PPARD--ANKS1A	3	3	PPARD	1124	chr6:35310458:+	ANKS1A	18649	chr6:34949467:+	ONLY_REF_SPLICE	YES	12	30	0.33	0.17	0.0378	0.0378	PPARD->Oncogene{Bushman},chr6:35310335-35395968:+,peroxisome_proliferator_activated_receptor_delta,ANKS1A->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1A,chr6:34857042-35059179:+	NIHOVCAR3_OVARY	0.17	0.33	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	TSPAN9--TEAD4	3	3	TSPAN9	2166	chr12:3192885:+	TEAD4	21172	chr12:3103904:+	ONLY_REF_SPLICE	YES	28	70	0.18	0.08	0.0378	0.0378	LOCAL_REARRANGEMENT:+:[36682],TSPAN9->chr12:3186521-3395730:+,tetraspanin_9,TEAD4->TEA_domain_transcription_factor_4,chr12:3068496-3149839:+	NIHOVCAR3_OVARY	0.08	0.18	0.0756	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	C15orf57--CBX3	3	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	36	37	0.12	0.12	0.0378	0.0252	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NIHOVCAR3_OVARY	0.12	0.12	0.063	TRUE	267	562	48	632	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	CEP128--DIO2	3	2	CEP128	27476	chr14:81223236:-	DIO2	49260	chr14:80683080:-	ONLY_REF_SPLICE	YES	7	0	0.42	1	0.0378	0.0252	NEIGHBORS[89230],CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,DIO2->Oncogene{Bushman},chr14:80663873-80854100:-,deiodinase,_iodothyronine,_type_II	NIHOVCAR3_OVARY	0.42	1	0.063	FALSE	0	0	0	1	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	CTDSPL2--CASC4	3	2	CTDSPL2	3072	chr15:44751398:+	CASC4	45857	chr15:44705534:+	ONLY_REF_SPLICE	YES	75	143	0.06	0.03	0.0378	0.0252	LOCAL_REARRANGEMENT:+:[11476],CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+	NIHOVCAR3_OVARY	0.03	0.06	0.063	TRUE	0	1	0	2	1	FALSE	ACH-000001
NIHOVCAR3_OVARY	CCDC6--ANK3	3	1	CCDC6	3814	chr10:61592283:-	ANK3	85094	chr10:61802517:-	ONLY_REF_SPLICE	YES	231	97	0.02	0.04	0.0378	0.0126	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	NIHOVCAR3_OVARY	0.02	0.04	0.0504	TRUE	1	0	0	1	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	SLC25A10--OGFOD3	3	1	SLC25A10	3654	chr17:79674243:+	OGFOD3	21851	chr17:80361966:-	ONLY_REF_SPLICE	YES	0	92	1	0.04	0.0378	0.0126	SLC25A10->chr17:79670401-79687569:+,chr17:79670404-79688042:+,solute_carrier_family_25_member_10,OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-	NIHOVCAR3_OVARY	0.04	1	0.0504	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	STARD10--FCHSD2	1	9	STARD10	6569	chr11:72492020:-	FCHSD2	29483	chr11:72600990:-	ONLY_REF_SPLICE	NO	50	52	0.17	0.16	0.0126	0.1135	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[43064],STARD10->StAR_related_lipid_transfer_domain_containing_10,chr11:72465774-72504726:-,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	NIHOVCAR3_OVARY	0.16	0.17	0.1261	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	TMEM117--RP11-210N13.1	3	1	TMEM117	3724	chr12:44338145:+	RP11-210N13.1	18852	chr12:44132149:+	ONLY_REF_SPLICE	YES	19	0	0.17	1	0.0378	0.0126	LOCAL_REARRANGEMENT:+:[94900],TMEM117->chr12:44229770-44783545:+,transmembrane_protein_117,RP11-210N13.1->chr12:44130431-44134870:+	NIHOVCAR3_OVARY	0.17	1	0.0504	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MT-ND3--MT-ATP8	3	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NIHOVCAR3_OVARY	1	1	0.0378	FALSE	351	233	23	137	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	PLEKHG3--MTHFD1	3	0	PLEKHG3	13277	chr14:65205573:+	MTHFD1	27446	chr14:64877808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0378	0	{Klijn_CCL:Ovary=1},PLEKHG3->chr14:65170820-65213610:+,pleckstrin_homology_and_RhoGEF_domain_containing_G3,MTHFD1->chr14:64854749-64926722:+,methylenetetrahydrofolate_dehydrogenase,_cyclohydrolase_and_formyltetrahydrofolate_synthetase_1	NIHOVCAR3_OVARY	1	1	0.0378	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	AP000769.1--FRMD8	2	3	AP000769.1	1325	chr11:65223052:+	FRMD8	11705	chr11:65167207:+	ONLY_REF_SPLICE	YES	0	44	1	0.1	0.0252	0.0378	LOCAL_REARRANGEMENT:+:[41732],AP000769.1->chr11:65222728-65234028:+,FRMD8->FERM_domain_containing_8,Oncogene{Bushman},chr11:65154070-65180996:+	NIHOVCAR3_OVARY	0.1	1	0.063	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	RBM47--APBB2	2	3	RBM47	2480	chr4:40631413:-	APBB2	40544	chr4:40895428:-	ONLY_REF_SPLICE	YES	69	21	0.07	0.19	0.0252	0.0378	RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-,APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-	NIHOVCAR3_OVARY	0.07	0.19	0.063	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	CNNM2--GBF1	2	2	CNNM2	2809	chr10:104679858:+	GBF1	51904	chr10:104139041:+	ONLY_REF_SPLICE	YES	7	117	0.36	0.03	0.0252	0.0252	CNNM2->chr10:104678050-104849978:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_2,GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1	NIHOVCAR3_OVARY	0.03	0.36	0.0504	TRUE	0	0	0	2	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	FAM179A--BRE	1	5	FAM179A	1087	chr2:29179563:+	BRE	60670	chr2:28561317:+	ONLY_REF_SPLICE	NO	2	43	0.75	0.12	0.0126	0.0631	FAM179A->chr2:29179477-29284239:+,family_with_sequence_similarity_179_member_A,BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+	NIHOVCAR3_OVARY	0.12	0.75	0.0757	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	ITGB8--AC099342.1	2	1	ITGB8	2232	chr7:20371556:+	AC099342.1	31270	chr7:20337905:+	ONLY_REF_SPLICE	YES	117	0	0.03	1	0.0252	0.0126	LOCAL_REARRANGEMENT:+:[18990],ITGB8->chr7:20370325-20455377:+,integrin_subunit_beta_8,AC099342.1->chr7:20336331-20351335:+	NIHOVCAR3_OVARY	0.03	1	0.0378	TRUE	0	5	0	1	5	TRUE	ACH-000001
NIHOVCAR3_OVARY	MED21--STK38L	2	1	MED21	7744	chr12:27199165:+	STK38L	17973	chr12:27449963:+	ONLY_REF_SPLICE	YES	1	4	0.75	0.43	0.0252	0.0126	MED21->chr12:27175479-27219276:+,mediator_complex_subunit_21,STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like	NIHOVCAR3_OVARY	0.43	0.75	0.0378	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MED21--STK38L	2	1	MED21	7744	chr12:27199165:+	STK38L	18653	chr12:27450643:+	ONLY_REF_SPLICE	YES	1	10	0.75	0.23	0.0252	0.0126	MED21->chr12:27175479-27219276:+,mediator_complex_subunit_21,STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like	NIHOVCAR3_OVARY	0.23	0.75	0.0378	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MYO9A--ZYG11B	2	1	MYO9A	25897	chr15:72226011:-	ZYG11B	71221	chr1:53245525:+	ONLY_REF_SPLICE	YES	13	10	0.19	0.23	0.0252	0.0126	{Klijn_CCL:Ovary=1},MYO9A->chr15:72114632-72410918:-,myosin_IXA,ZYG11B->chr1:53192126-53293014:+,zyg-11_family_member_B,_cell_cycle_regulator	NIHOVCAR3_OVARY	0.19	0.23	0.0378	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	PLXNB2--SYCE3	2	1	PLXNB2	9049	chr22:50724229:-	SYCE3	23946	chr22:50994834:-	ONLY_REF_SPLICE	YES	244	0	0.01	1	0.0252	0.0126	PLXNB2->chr22:50713408-50746056:-,plexin_B2,SYCE3->chr22:50989541-51001334:-,synaptonemal_complex_central_element_protein_3	NIHOVCAR3_OVARY	0.01	1	0.0378	FALSE	0	0	0	1	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	PPFIBP1--SMCO2	1	5	PPFIBP1	4200	chr12:27731172:+	SMCO2	45492	chr12:27627719:+	ONLY_REF_SPLICE	NO	398	0	0.01	1	0.0126	0.0631	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	NIHOVCAR3_OVARY	0.01	1	0.0757	FALSE	0	1	0	5	1	FALSE	ACH-000001
NIHOVCAR3_OVARY	RP11-973F15.1--RP11-94A24.1	2	1	RP11-973F15.1	1226	chr8:123706120:-	RP11-94A24.1	7870	chr8:123429261:-	ONLY_REF_SPLICE	YES	25	0	0.11	1	0.0252	0.0126	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	NIHOVCAR3_OVARY	0.11	1	0.0378	TRUE	0	2	0	5	1	TRUE	ACH-000001
NIHOVCAR3_OVARY	SAMD8--DUSP13	1	5	SAMD8	5140	chr10:76924498:+	DUSP13	18547	chr10:76865626:-	ONLY_REF_SPLICE	NO	44	3	0.12	0.67	0.0126	0.0631	{Klijn_CCL:Ovary=1},NEIGHBORS_OVERLAP:+:-:[9635],SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,DUSP13->chr10:76854192-76868979:-,dual_specificity_phosphatase_13	NIHOVCAR3_OVARY	0.12	0.67	0.0757	FALSE	0	0	0	2	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	AMBRA1--ARHGAP1	2	0	AMBRA1	10142	chr11:46563495:-	ARHGAP1	33828	chr11:46717706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	YOSHIHARA_TCGA_num_samples[LUAD:2],{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[82955],AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,ARHGAP1->Rho_GTPase_activating_protein_1,chr11:46698630-46722165:-	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	AP000487.5--SSPN	2	0	AP000487.5	1391	chr11:70244204:-	SSPN	16084	chr12:26377226:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	AP000487.5->chr11:70218352-70244594:-,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	ATXN7--GLE1	2	0	ATXN7	10014	chr3:63965843:+	GLE1	30919	chr9:131285559:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	ATXN7->ataxin_7,chr3:63850233-63989138:+,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	BMP7--RP4-800J21.3	2	0	BMP7	4289	chr20:55803285:-	RP4-800J21.3	22277	chr20:55959971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	BMP7->bone_morphogenetic_protein_7,chr20:55743804-55841685:-,RP4-800J21.3->chr20:55959216-55968118:-	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	DUSP14--TADA2A	2	0	DUSP14	1128	chr17:35850064:+	TADA2A	17459	chr17:35800606:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	LOCAL_REARRANGEMENT:+:[10102],DUSP14->chr17:35849937-35873603:+,dual_specificity_phosphatase_14,TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	E2F6--SRSF11	2	0	E2F6	9912	chr2:11587753:-	SRSF11	17406	chr1:70687298:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	E2F6->E2F_transcription_factor_6,Oncogene{Bushman},chr2:11584501-11606297:-,SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	F2R--GNAS	2	0	F2R	1353	chr5:76012220:+	GNAS	25051	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	F2R->chr5:76011868-76031606:+,coagulation_factor_II_thrombin_receptor,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	LARP4--MFF	2	0	LARP4	17457	chr12:50848200:+	MFF	36271	chr2:228195342:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+,MFF->chr2:228189867-228222550:+,mitochondrial_fission_factor	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	LRCH2--NDUFB2	2	0	LRCH2	1380	chrX:114468256:-	NDUFB2	29814	chr7:140402666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	LRCH2->chrX:114345185-114468635:-,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_2,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MYL6--GNAS	2	0	MYL6	2462	chr12:56553406:+	GNAS	25173	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	1	0	3	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	PAK4--RYR1	2	0	PAK4	1150	chr19:39616559:+	RYR1	89700	chr19:39051753:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	PEF1--RP1-197B17.3	2	0	PEF1	1056	chr1:32110442:-	RP1-197B17.3	16625	chr12:48132698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	PEF1->chr1:32095463-32110497:-,penta-EF-hand_domain_containing_1,RP1-197B17.3->chr12:48099868-48136077:+	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	PEF1--RP1-197B17.3	2	0	PEF1	1056	chr1:32110442:-	RP1-197B17.3	15308	chr12:48122670:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	PEF1->chr1:32095463-32110497:-,penta-EF-hand_domain_containing_1,RP1-197B17.3->chr12:48099868-48136077:+	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	PPFIBP1--SMCO2	2	0	PPFIBP1	1935	chr12:27677298:+	SMCO2	50047	chr12:27648613:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	LOCAL_REARRANGEMENT:+:[21246],PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	3	0	3	2	TRUE	ACH-000001
NIHOVCAR3_OVARY	RBM38--RP4-813D12.3	1	4	RBM38	2927	chr20:55968389:+	RP4-813D12.3	11170	chr20:55847054:+	ONLY_REF_SPLICE	NO	413	10	0.01	0.33	0.0126	0.0505	RBM38->RNA_binding_motif_protein_38,chr20:55966463-55984389:+,RP4-813D12.3->chr20:55841853-55858054:+	NIHOVCAR3_OVARY	0.01	0.33	0.0631	FALSE	0	0	0	1	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	TFEB--PGC	2	0	TFEB	1114	chr6:41703884:-	PGC	22780	chr6:41710227:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	LOCAL_REARRANGEMENT:-:[452],TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,PGC->chr6:41704449-41721847:-,progastricsin_(pepsinogen_C)	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	2	0	1	2	TRUE	ACH-000001
NIHOVCAR3_OVARY	TTC39C--LAMA3	2	0	TTC39C	2885	chr18:21595002:+	LAMA3	93181	chr18:21508087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[37707],TTC39C->chr18:21572737-21715574:+,tetratricopeptide_repeat_domain_39C,LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	UBAP2--C9orf24	2	0	UBAP2	6945	chr9:33996221:-	C9orf24	42037	chr9:34379730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2,C9orf24->chr9:34379017-34397830:-,chromosome_9_open_reading_frame_24	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	UBN1--UBALD1	2	0	UBN1	8645	chr16:4910954:+	UBALD1	26627	chr16:4660556:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	UBN1->chr16:4896666-4932361:+,ubinuclein_1,UBALD1->UBA_like_domain_containing_1,chr16:4658884-4665028:-	NIHOVCAR3_OVARY	1	1	0.0252	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	RP11-476K15.1--CTD-2015H3.2	1	3	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0126	0.0378	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NIHOVCAR3_OVARY	1	1	0.0504	FALSE	0	46	0	73	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	SAMD8--DUSP13	1	3	SAMD8	5140	chr10:76924498:+	DUSP13	20959	chr10:76861719:-	ONLY_REF_SPLICE	NO	44	3	0.08	0.57	0.0126	0.0378	{Klijn_CCL:Ovary=1},NEIGHBORS_OVERLAP:+:-:[9635],SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,DUSP13->chr10:76854192-76868979:-,dual_specificity_phosphatase_13	NIHOVCAR3_OVARY	0.08	0.57	0.0504	FALSE	0	0	0	2	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	CNNM2--GBF1	1	2	CNNM2	2809	chr10:104679858:+	GBF1	52141	chr10:104139278:+	ONLY_REF_SPLICE	YES	7	113	0.3	0.03	0.0126	0.0252	CNNM2->chr10:104678050-104849978:+,cyclin_and_CBS_domain_divalent_metal_cation_transport_mediator_2,GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1	NIHOVCAR3_OVARY	0.03	0.3	0.0378	TRUE	0	0	0	2	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	CTDSPL2--CASC4	1	2	CTDSPL2	3072	chr15:44751398:+	CASC4	39484	chr15:44673004:+	ONLY_REF_SPLICE	NO	75	209	0.04	0.01	0.0126	0.0252	LOCAL_REARRANGEMENT:+:[11476],CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+	NIHOVCAR3_OVARY	0.01	0.04	0.0378	FALSE	0	0	0	1	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	BMP7--ZBP1	1	1	BMP7	7812	chr20:55777531:-	ZBP1	24352	chr20:56190636:-	ONLY_REF_SPLICE	YES	680	3	0	0.4	0.0126	0.0126	BMP7->bone_morphogenetic_protein_7,chr20:55743804-55841685:-,ZBP1->Z-DNA_binding_protein_1,chr20:56178902-56195632:-	NIHOVCAR3_OVARY	0	0.4	0.0252	FALSE	0	0	0	2	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	DNAH17--RBFOX3	1	1	DNAH17	23734	chr17:76521091:-	RBFOX3	94993	chr17:77102870:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0126	0.0126	DNAH17->chr17:76419778-76573476:-,dynein_axonemal_heavy_chain_17,RBFOX3->RNA_binding_protein,_fox-1_homolog_3,chr17:77085427-77613550:-	NIHOVCAR3_OVARY	0.5	1	0.0252	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	ITGB8--AC099342.1	1	1	ITGB8	5451	chr7:20403345:+	AC099342.1	31270	chr7:20337905:+	ONLY_REF_SPLICE	NO	218	0	0.01	1	0.0126	0.0126	LOCAL_REARRANGEMENT:+:[18990],ITGB8->chr7:20370325-20455377:+,integrin_subunit_beta_8,AC099342.1->chr7:20336331-20351335:+	NIHOVCAR3_OVARY	0.01	1	0.0252	FALSE	0	1	0	1	1	FALSE	ACH-000001
NIHOVCAR3_OVARY	ITSN2--OTOF	1	1	ITSN2	2475	chr2:24550921:-	OTOF	59103	chr2:26726713:-	ONLY_REF_SPLICE	NO	9	8	0.18	0.2	0.0126	0.0126	ITSN2->chr2:24425733-24583583:-,intersectin_2,OTOF->Oncogene{Bushman},chr2:26680071-26781566:-,otoferlin	NIHOVCAR3_OVARY	0.18	0.2	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	MYO9A--ZYG11B	1	1	MYO9A	24656	chr15:72227682:-	ZYG11B	71221	chr1:53245525:+	ONLY_REF_SPLICE	YES	10	10	0.17	0.17	0.0126	0.0126	{Klijn_CCL:Ovary=1},MYO9A->chr15:72114632-72410918:-,myosin_IXA,ZYG11B->chr1:53192126-53293014:+,zyg-11_family_member_B,_cell_cycle_regulator	NIHOVCAR3_OVARY	0.17	0.17	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	RAB11FIP4--NF1	1	1	RAB11FIP4	6978	chr17:29815450:+	NF1	32870	chr17:29483001:+	ONLY_REF_SPLICE	NO	9	32	0.18	0.06	0.0126	0.0126	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[9508],RAB11FIP4->RAB11_family_interacting_protein_4,chr17:29718642-29865236:+,NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1	NIHOVCAR3_OVARY	0.06	0.18	0.0252	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	RP1-90G24.10--SLC5A1	1	1	RP1-90G24.10	2274	chr22:32603263:+	SLC5A1	19997	chr22:32495170:+	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0126	0.0126	LOCAL_REARRANGEMENT:+:[92086],RP1-90G24.10->chr22:32601102-32665653:+,SLC5A1->chr22:32439019-32509016:+,solute_carrier_family_5_member_1	NIHOVCAR3_OVARY	0.29	1	0.0252	TRUE	0	0	0	2	0	TRUE	ACH-000001
NIHOVCAR3_OVARY	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0126	0.0126	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NIHOVCAR3_OVARY	1	1	0.0252	FALSE	93	270	15	244	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	NO	2	429	0.5	0	0.0126	0.0126	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	NIHOVCAR3_OVARY	0	0.5	0.0252	FALSE	0	59	0	125	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	SPEN--NEU1	1	1	SPEN	23614	chr1:16264501:+	NEU1	31354	chr6:31828398:-	ONLY_REF_SPLICE	NO	80	140	0.02	0.01	0.0126	0.0126	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,NEU1->chr6:31825436-31830683:-,neuraminidase_1_(lysosomal_sialidase)	NIHOVCAR3_OVARY	0.01	0.02	0.0252	FALSE	0	0	0	2	0	FALSE	ACH-000001
NIHOVCAR3_OVARY	TFEB--PGC	1	1	TFEB	4611	chr6:41700387:-	PGC	22780	chr6:41710227:-	ONLY_REF_SPLICE	NO	3	7	0.4	0.22	0.0126	0.0126	LOCAL_REARRANGEMENT:-:[452],TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,PGC->chr6:41704449-41721847:-,progastricsin_(pepsinogen_C)	NIHOVCAR3_OVARY	0.22	0.4	0.0252	TRUE	0	1	0	1	1	TRUE	ACH-000001
NCIH69_LUNG	PAWR--GNS	166	79	PAWR	2369	chr12:80083509:-	GNS	30402	chr12:65146537:-	ONLY_REF_SPLICE	YES	50	84	0.83	0.74	1.7302	0.8234	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,GNS->chr12:65107225-65153227:-,glucosamine_(N-acetyl)-6-sulfatase	NCIH69_LUNG	0.74	0.83	2.5536	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	FSTL4--ZNF608	65	24	FSTL4	4787	chr5:132902877:-	ZNF608	33676	chr5:124036962:-	ONLY_REF_SPLICE	YES	32	91	0.74	0.49	0.6775	0.2502	FSTL4->chr5:132532147-132948255:-,follistatin_like_4,ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608	NCIH69_LUNG	0.49	0.74	0.9277	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	ZNF608--GUSBP3	54	38	ZNF608	4819	chr5:124079777:-	GUSBP3	22028	chr5:68976626:-	ONLY_REF_SPLICE	YES	80	200	0.53	0.32	0.5628	0.3961	ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608,GUSBP3->chr5:68790040-69006341:-,glucuronidase,_beta_pseudogene_3	NCIH69_LUNG	0.32	0.53	0.9589	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	TIMM23B--PARGP1	55	5	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.5733	0.0521	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	NCIH69_LUNG	1	1	0.6254	TRUE	393	2105	140	19	0	FALSE	ACH-000358
NCIH69_LUNG	GUSBP1--FSTL4	45	30	GUSBP1	1144	chr5:21342085:+	FSTL4	25048	chr5:132736678:-	ONLY_REF_SPLICE	YES	29	32	0.72	0.7	0.469	0.3127	GUSBP1->chr5:21341942-21589481:+,glucuronidase,_beta_pseudogene_1,FSTL4->chr5:132532147-132948255:-,follistatin_like_4	NCIH69_LUNG	0.7	0.72	0.7817	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	AC079117.1--ASB3	41	20	AC079117.1	3232	chr2:77217052:+	ASB3	13929	chr2:53956707:-	ONLY_REF_SPLICE	YES	0	21	1	0.74	0.4273	0.2085	AC079117.1->chr2:77213091-77236917:+,ASB3->ankyrin_repeat_and_SOCS_box_containing_3,chr2:53897430-54087297:-	NCIH69_LUNG	0.74	1	0.6358	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	WI2-1896O14.1--RP11-353N4.1	39	14	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4065	0.1459	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	NCIH69_LUNG	1	1	0.5524	TRUE	361	258	24	38	0	FALSE	ACH-000358
NCIH69_LUNG	TEX41--AC079117.1	40	6	TEX41	34486	chr2:145929698:+	AC079117.1	43905	chr2:77214532:+	ONLY_REF_SPLICE	YES	5	0	0.9	1	0.4169	0.0625	TEX41->chr2:145425534-145940216:+,testis_expressed_41_(non-protein_coding),AC079117.1->chr2:77213091-77236917:+	NCIH69_LUNG	0.9	1	0.4794	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	OR51S1--TP53I11	39	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4065	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH69_LUNG	1	1	0.4065	TRUE	402	216	10	229	0	FALSE	ACH-000358
NCIH69_LUNG	MT-ND5--MT-ATP8	33	13	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1869	7	0.02	0.87	0.344	0.1355	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH69_LUNG	0.02	0.87	0.4795	FALSE	43	37	8	105	0	FALSE	ACH-000358
NCIH69_LUNG	RP11-444D3.1--SOX5	30	19	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	11	1	0.82	0.3127	0.198	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH69_LUNG	0.82	1	0.5107	TRUE	477	1352	189	275	0	FALSE	ACH-000358
NCIH69_LUNG	TIMM23--RP11-464F9.1	31	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	154	1	0.17	0.97	0.3231	0.0104	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH69_LUNG	0.17	0.97	0.3335	TRUE	519	3926	326	965	0	FALSE	ACH-000358
NCIH69_LUNG	ZNF654--HMGB2	31	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3231	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH69_LUNG	1	1	0.3231	TRUE	0	0	0	518	0	FALSE	ACH-000358
NCIH69_LUNG	C15orf57--CBX3	21	21	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	120	27	0.26	0.61	0.2189	0.2189	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH69_LUNG	0.26	0.61	0.4378	TRUE	267	562	48	632	0	FALSE	ACH-000358
NCIH69_LUNG	ASB3--MYCNUN	18	10	ASB3	10163	chr2:53941521:-	MYCNUN	19250	chr2:16075896:+	ONLY_REF_SPLICE	YES	22	0	0.56	1	0.1876	0.1042	ASB3->ankyrin_repeat_and_SOCS_box_containing_3,chr2:53897430-54087297:-,MYCNUN->chr2:16060521-16076139:+	NCIH69_LUNG	0.56	1	0.2918	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	CTD-2008L17.1--RP11-456O19.2	16	7	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	5	0	0.82	1	0.1668	0.073	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH69_LUNG	0.82	1	0.2398	FALSE	20	187	4	79	0	FALSE	ACH-000358
NCIH69_LUNG	MT-ND5--MT-ATP8	12	23	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	13	0	0.73	1	0.1251	0.2397	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH69_LUNG	0.73	1	0.3648	FALSE	43	37	8	105	0	FALSE	ACH-000358
NCIH69_LUNG	ZNF608--GUSBP3	15	6	ZNF608	1275	chr5:124084226:-	GUSBP3	22028	chr5:68976626:-	ONLY_REF_SPLICE	YES	49	200	0.3	0.1	0.1563	0.0625	ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608,GUSBP3->chr5:68790040-69006341:-,glucuronidase,_beta_pseudogene_3	NCIH69_LUNG	0.1	0.3	0.2188	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	RP11-680G10.1--GSE1	15	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	84	1	0.18	0.1563	0.0417	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH69_LUNG	0.18	1	0.198	TRUE	465	1949	224	605	0	FALSE	ACH-000358
NCIH69_LUNG	PAWR--GNS	2	52	PAWR	2369	chr12:80083509:-	GNS	31462	chr12:65141698:-	ONLY_REF_SPLICE	YES	50	72	0.52	0.43	0.0208	0.542	PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,GNS->chr12:65107225-65153227:-,glucosamine_(N-acetyl)-6-sulfatase	NCIH69_LUNG	0.43	0.52	0.5628	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	BICD1--AC016629.3	12	7	BICD1	6764	chr12:32459056:+	AC016629.3	25418	chr19:59110720:-	INCL_NON_REF_SPLICE	YES	104	0	0.15	1	0.1251	0.073	BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,AC016629.3->chr19:59105263-59110722:-	NCIH69_LUNG	0.15	1	0.1981	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	RP11-444D3.1--SOX5	10	13	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	11	1	0.68	0.1042	0.1355	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH69_LUNG	0.68	1	0.2397	TRUE	274	363	69	150	0	FALSE	ACH-000358
NCIH69_LUNG	TMEM163--AC073928.2	11	4	TMEM163	4523	chr2:135308141:-	AC073928.2	17771	chr2:140889383:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1147	0.0417	TMEM163->chr2:135213330-135476570:-,transmembrane_protein_163,AC073928.2->chr2:140861152-140889349:-	NCIH69_LUNG	1	1	0.1564	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	C15orf57--CBX3	9	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	113	27	0.14	0.4	0.0938	0.0938	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH69_LUNG	0.14	0.4	0.1876	TRUE	267	562	48	632	0	FALSE	ACH-000358
NCIH69_LUNG	MT-ND5--MT-ATP8	8	10	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5164	57	0	0.24	0.0834	0.1042	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH69_LUNG	0	0.24	0.1876	FALSE	43	37	8	105	0	FALSE	ACH-000358
NCIH69_LUNG	TYMS--SEPT9	10	1	TYMS	4286	chr18:662320:+	SEPT9	45878	chr17:75483506:+	ONLY_REF_SPLICE	YES	747	284	0.01	0.04	0.1042	0.0104	{Klijn_CCL:Lung=1,Urinary_Bladder=1},TYMS->chr18:657604-673578:+,thymidylate_synthetase,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	NCIH69_LUNG	0.01	0.04	0.1146	TRUE	0	9	0	5	1	FALSE	ACH-000358
NCIH69_LUNG	MT-ND5--MT-ATP8	3	28	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0.2918	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH69_LUNG	1	1	0.3231	FALSE	43	37	8	105	0	FALSE	ACH-000358
NCIH69_LUNG	MT-ND5--MT-ATP8	3	27	MT-ND5	2792	chrM:14128:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0.2814	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH69_LUNG	1	1	0.3127	FALSE	43	37	8	105	0	FALSE	ACH-000358
NCIH69_LUNG	MT-ND5--MT-ATP8	3	27	MT-ND5	2795	chrM:14131:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0.2814	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH69_LUNG	1	1	0.3127	FALSE	43	37	8	105	0	FALSE	ACH-000358
NCIH69_LUNG	RP11-123O10.4--GRIP1	8	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	22	1	0.39	0.0834	0.0625	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH69_LUNG	0.39	1	0.1459	FALSE	416	2512	207	587	0	FALSE	ACH-000358
NCIH69_LUNG	RP11-680G10.1--GSE1	8	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.58	0.0834	0.0625	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH69_LUNG	0.58	1	0.1459	TRUE	458	1351	185	561	0	FALSE	ACH-000358
NCIH69_LUNG	ANP32B--PTMS	9	0	ANP32B	9252	chr9:100774754:+	PTMS	16988	chr12:6879139:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0938	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH69_LUNG	1	1	0.0938	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	NRIP1--AF127936.7	9	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0938	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH69_LUNG	1	1	0.0938	FALSE	292	1546	117	613	0	FALSE	ACH-000358
NCIH69_LUNG	MT-ND5--MT-ATP8	4	19	MT-ND5	2236	chrM:13572:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	2008	0	0.01	1	0.0417	0.198	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH69_LUNG	0.01	1	0.2397	FALSE	43	37	8	105	0	FALSE	ACH-000358
NCIH69_LUNG	ZNF608--GUSBP3	1	30	ZNF608	4819	chr5:124079777:-	GUSBP3	23062	chr5:68975127:-	ONLY_REF_SPLICE	NO	80	302	0.28	0.09	0.0104	0.3127	ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608,GUSBP3->chr5:68790040-69006341:-,glucuronidase,_beta_pseudogene_3	NCIH69_LUNG	0.09	0.28	0.3231	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	ZNF608--GUSBP3	5	13	ZNF608	4490	chr5:124080106:-	GUSBP3	22028	chr5:68976626:-	ONLY_REF_SPLICE	YES	109	200	0.14	0.08	0.0521	0.1355	ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608,GUSBP3->chr5:68790040-69006341:-,glucuronidase,_beta_pseudogene_3	NCIH69_LUNG	0.08	0.14	0.1876	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	MT-ND5--MT-ATP8	4	15	MT-ND5	2687	chrM:14023:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	748	7	0.02	0.73	0.0417	0.1563	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH69_LUNG	0.02	0.73	0.198	FALSE	43	37	8	105	0	FALSE	ACH-000358
NCIH69_LUNG	FSTL4--ZNF608	3	18	FSTL4	2376	chr5:132939549:-	ZNF608	33676	chr5:124036962:-	ONLY_REF_SPLICE	YES	24	91	0.47	0.19	0.0313	0.1876	FSTL4->chr5:132532147-132948255:-,follistatin_like_4,ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608	NCIH69_LUNG	0.19	0.47	0.2189	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	MNS1--TEX9	7	0	MNS1	10647	chr15:56720962:-	TEX9	31887	chr15:56720843:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0	NEIGHBORS_OVERLAP:-:+:[24453],MNS1->chr15:56713742-56757335:-,meiosis_specific_nuclear_structural_1,TEX9->chr15:56536207-56738195:+,testis_expressed_9	NCIH69_LUNG	1	1	0.073	FALSE	0	0	0	3	0	FALSE	ACH-000358
NCIH69_LUNG	MT-ND5--MT-ATP8	3	16	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	24	7	0.44	0.73	0.0313	0.1668	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH69_LUNG	0.44	0.73	0.1981	FALSE	43	37	8	105	0	FALSE	ACH-000358
NCIH69_LUNG	MT-ND5--MT-ND6	6	4	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	3	2006	0.77	0	0.0625	0.0417	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH69_LUNG	0	0.77	0.1042	FALSE	26	124	4	93	0	FALSE	ACH-000358
NCIH69_LUNG	GNG4--ARID4B	5	7	GNG4	5417	chr1:235747040:-	ARID4B	44198	chr1:235331967:-	ONLY_REF_SPLICE	YES	435	40	0.03	0.23	0.0521	0.073	GNG4->G_protein_subunit_gamma_4,chr1:235710987-235814054:-,ARID4B->AT-rich_interaction_domain_4B,chr1:235294949-235491534:-	NCIH69_LUNG	0.03	0.23	0.1251	TRUE	0	0	0	1	0	FALSE	ACH-000358
NCIH69_LUNG	MT-ND5--MT-ATP8	3	15	MT-ND5	2617	chrM:13953:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1992	7	0.01	0.72	0.0313	0.1563	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH69_LUNG	0.01	0.72	0.1876	FALSE	43	37	8	105	0	FALSE	ACH-000358
NCIH69_LUNG	LINC01014--KCNMB2	6	2	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	7	65	0.53	0.11	0.0625	0.0208	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH69_LUNG	0.11	0.53	0.0833	FALSE	11	60	26	37	0	FALSE	ACH-000358
NCIH69_LUNG	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2542	0	0	1	0.0625	0.0104	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH69_LUNG	0	1	0.0729	FALSE	13	9	0	364	0	FALSE	ACH-000358
NCIH69_LUNG	C15orf57--CBX3	3	10	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	113	27	0.1	0.33	0.0313	0.1042	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH69_LUNG	0.1	0.33	0.1355	TRUE	267	562	48	632	0	FALSE	ACH-000358
NCIH69_LUNG	MT-ND5--MT-ND6	4	6	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.91	0.0417	0.0625	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH69_LUNG	0.91	1	0.1042	FALSE	26	124	4	93	0	FALSE	ACH-000358
NCIH69_LUNG	GNG4--ARID4B	3	9	GNG4	8571	chr1:235713384:-	ARID4B	44198	chr1:235331967:-	INCL_NON_REF_SPLICE	YES	62	40	0.16	0.23	0.0313	0.0938	GNG4->G_protein_subunit_gamma_4,chr1:235710987-235814054:-,ARID4B->AT-rich_interaction_domain_4B,chr1:235294949-235491534:-	NCIH69_LUNG	0.16	0.23	0.1251	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	KANSL1--RP11-707O23.5	5	1	KANSL1	8599	chr17:44230270:-	RP11-707O23.5	32091	chr17:43679427:-	INCL_NON_REF_SPLICE	YES	101	4	0.06	0.6	0.0521	0.0104	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,RP11-707O23.5->chr17:43678235-43679706:-	NCIH69_LUNG	0.06	0.6	0.0625	TRUE	0	1	0	2	0	TRUE	ACH-000358
NCIH69_LUNG	BICD1--AC016629.3	4	4	BICD1	6764	chr12:32459056:+	AC016629.3	25511	chr19:59110627:-	INCL_NON_REF_SPLICE	YES	104	0	0.07	1	0.0417	0.0417	BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,AC016629.3->chr19:59105263-59110722:-	NCIH69_LUNG	0.07	1	0.0834	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	RP11-1E3.1--RP11-455B3.1	4	4	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0417	0.0417	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	NCIH69_LUNG	1	1	0.0834	TRUE	13	49	2	38	0	FALSE	ACH-000358
NCIH69_LUNG	RP11-123O10.4--GRIP1	3	6	RP11-123O10.4	2167	chr12:67285681:-	GRIP1	11081	chr12:66990707:-	INCL_NON_REF_SPLICE	YES	0	22	1	0.29	0.0313	0.0625	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH69_LUNG	0.29	1	0.0938	FALSE	0	5	0	12	0	FALSE	ACH-000358
NCIH69_LUNG	CTD-2008L17.1--RP11-456O19.2	4	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	5	0	0.5	1	0.0417	0.0104	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH69_LUNG	0.5	1	0.0521	FALSE	33	240	4	98	0	FALSE	ACH-000358
NCIH69_LUNG	RP1-34H18.1--NAV3	4	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0.0104	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH69_LUNG	1	1	0.0521	TRUE	254	575	65	124	0	FALSE	ACH-000358
NCIH69_LUNG	TMEM163--AC073928.2	4	1	TMEM163	4523	chr2:135308141:-	AC073928.2	18944	chr2:140874013:-	ONLY_REF_SPLICE	YES	0	4	1	0.56	0.0417	0.0104	TMEM163->chr2:135213330-135476570:-,transmembrane_protein_163,AC073928.2->chr2:140861152-140889349:-	NCIH69_LUNG	0.56	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	BICD1--AC016629.3	4	0	BICD1	6764	chr12:32459056:+	AC016629.3	26672	chr19:59109183:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0	BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,AC016629.3->chr19:59105263-59110722:-	NCIH69_LUNG	1	1	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	ZNF608--GUSBP3	3	4	ZNF608	4819	chr5:124079777:-	GUSBP3	24218	chr5:68941896:-	ONLY_REF_SPLICE	YES	80	306	0.08	0.02	0.0313	0.0417	ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608,GUSBP3->chr5:68790040-69006341:-,glucuronidase,_beta_pseudogene_3	NCIH69_LUNG	0.02	0.08	0.073	TRUE	0	0	0	1	0	FALSE	ACH-000358
NCIH69_LUNG	ASB3--MYCNUN	1	10	ASB3	10163	chr2:53941521:-	MYCNUN	18120	chr2:16061690:+	ONLY_REF_SPLICE	YES	22	1	0.33	0.92	0.0104	0.1042	ASB3->ankyrin_repeat_and_SOCS_box_containing_3,chr2:53897430-54087297:-,MYCNUN->chr2:16060521-16076139:+	NCIH69_LUNG	0.33	0.92	0.1146	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	LINC01014--KCNMB2	3	2	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	7	67	0.42	0.07	0.0313	0.0208	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH69_LUNG	0.07	0.42	0.0521	FALSE	12	33	18	33	0	FALSE	ACH-000358
NCIH69_LUNG	SHFM1--DLX6-AS1	3	2	SHFM1	7020	chr7:96324110:-	DLX6-AS1	31487	chr7:96598430:-	ONLY_REF_SPLICE	YES	1383	452	0	0.01	0.0313	0.0208	SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-	NCIH69_LUNG	0	0.01	0.0521	FALSE	0	1	0	6	0	FALSE	ACH-000358
NCIH69_LUNG	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2526	0	0	1	0.0313	0.0104	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH69_LUNG	0	1	0.0417	FALSE	13	9	0	364	0	FALSE	ACH-000358
NCIH69_LUNG	TMEM163--AC073928.2	3	1	TMEM163	4523	chr2:135308141:-	AC073928.2	18947	chr2:140874010:-	INCL_NON_REF_SPLICE	YES	0	2	1	0.67	0.0313	0.0104	TMEM163->chr2:135213330-135476570:-,transmembrane_protein_163,AC073928.2->chr2:140861152-140889349:-	NCIH69_LUNG	0.67	1	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	ZADH2--TSHZ1	3	1	ZADH2	1499	chr18:72920805:-	TSHZ1	22211	chr18:72997403:+	ONLY_REF_SPLICE	YES	127	81	0.03	0.05	0.0313	0.0104	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Brain_-_Hypothalamus=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[1407],ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2,TSHZ1->chr18:72922710-73001905:+,teashirt_zinc_finger_homeobox_1	NCIH69_LUNG	0.03	0.05	0.0417	TRUE	0	4	0	5	1	FALSE	ACH-000358
NCIH69_LUNG	ABL1--MED27	3	0	ABL1	1510	chr9:133589842:+	MED27	25857	chr9:134769379:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27	NCIH69_LUNG	1	1	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	ANP32B--PTMS	3	0	ANP32B	6936	chr9:100767435:+	PTMS	17187	chr12:6879338:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,PTMS->chr12:6874682-6880116:+,parathymosin	NCIH69_LUNG	1	1	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	FAM60A--GNAS	3	0	FAM60A	2035	chr12:31478958:-	GNAS	34764	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH69_LUNG	1	1	0.0313	TRUE	0	0	0	2	0	TRUE	ACH-000358
NCIH69_LUNG	GDAP1--RP11-758M4.1	3	0	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH69_LUNG	1	1	0.0313	TRUE	7	28	0	43	0	FALSE	ACH-000358
NCIH69_LUNG	MT-ND5--MT-ND6	3	0	MT-ND5	1908	chrM:13244:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH69_LUNG	1	1	0.0313	FALSE	26	125	4	93	0	FALSE	ACH-000358
NCIH69_LUNG	RP11-155G15.2--RP11-1E3.1	3	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH69_LUNG	1	1	0.0313	FALSE	46	201	11	112	0	FALSE	ACH-000358
NCIH69_LUNG	FGF14-IT1--FGF14	2	3	FGF14-IT1	3717	chr13:103018795:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	1	41	0.83	0.11	0.0208	0.0313	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	NCIH69_LUNG	0.11	0.83	0.0521	TRUE	80	58	2	10	0	FALSE	ACH-000358
NCIH69_LUNG	MARCH3--COMMD10	2	2	MARCH3	5405	chr5:126250622:-	COMMD10	21445	chr5:115627214:+	ONLY_REF_SPLICE	YES	87	72	0.04	0.05	0.0208	0.0208	MARCH3->Oncogene{Bushman},chr5:126203406-126366500:-,membrane_associated_ring-CH-type_finger_3,COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+	NCIH69_LUNG	0.04	0.05	0.0416	TRUE	0	0	0	1	0	FALSE	ACH-000358
NCIH69_LUNG	RP11-123O10.4--GRIP1	2	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	22	1	0.15	0.0208	0.0208	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH69_LUNG	0.15	1	0.0416	FALSE	93	270	15	244	0	FALSE	ACH-000358
NCIH69_LUNG	AGPS--TEX41	2	1	AGPS	1406	chr2:178257777:+	TEX41	63582	chr2:145929565:+	ONLY_REF_SPLICE	YES	55	1	0.05	0.75	0.0208	0.0104	AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+,TEX41->chr2:145425534-145940216:+,testis_expressed_41_(non-protein_coding)	NCIH69_LUNG	0.05	0.75	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	RP11-444D3.1--SOX5	1	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	18992	chr12:23999127:-	ONLY_REF_SPLICE	YES	0	33	1	0.15	0.0104	0.0521	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH69_LUNG	0.15	1	0.0625	TRUE	3	4	0	10	0	FALSE	ACH-000358
NCIH69_LUNG	RPL32P3--IFT122	2	1	RPL32P3	4754	chr3:129112478:-	IFT122	37213	chr3:129218745:+	ONLY_REF_SPLICE	YES	11	66	0.21	0.04	0.0208	0.0104	GTEx_FI:{Brain=[count:2=pct:0.3],Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},LOCAL_INVERSION:-:+:[40470],RPL32P3->chr3:129101765-129118498:-,ribosomal_protein_L32_pseudogene_3,IFT122->chr3:129158968-129239198:+,intraflagellar_transport_122	NCIH69_LUNG	0.04	0.21	0.0312	TRUE	2	2	0	1	0	FALSE	ACH-000358
NCIH69_LUNG	TMEM163--AC073928.2	2	1	TMEM163	4523	chr2:135308141:-	AC073928.2	19998	chr2:140871673:-	ONLY_REF_SPLICE	YES	0	3	1	0.5	0.0208	0.0104	TMEM163->chr2:135213330-135476570:-,transmembrane_protein_163,AC073928.2->chr2:140861152-140889349:-	NCIH69_LUNG	0.5	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	CMPK1--ZNF436	2	0	CMPK1	1320	chr1:47799788:+	ZNF436	16457	chr1:23689714:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	CMPK1->chr1:47799469-47844511:+,cytidine/uridine_monophosphate_kinase_1,ZNF436->chr1:23685941-23695935:-,zinc_finger_protein_436	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	CPSF2--PKHD1L1	2	0	CPSF2	3657	chr14:92597477:+	PKHD1L1	63502	chr8:110461567:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	CPSF2->chr14:92588281-92630755:+,cleavage_and_polyadenylation_specific_factor_2,PKHD1L1->chr8:110374706-110542559:+,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)-like_1	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	CTB-161M19.4--UBE2D2	2	0	CTB-161M19.4	1085	chr5:118406501:-	UBE2D2	14099	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	CTB-161M19.4->chr5:118342042-118406585:-,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH69_LUNG	1	1	0.0208	TRUE	0	9	0	44	1	FALSE	ACH-000358
NCIH69_LUNG	ETFA--TIAL1	2	0	ETFA	10669	chr15:76566753:-	TIAL1	27320	chr10:121347760:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	ETFA->chr15:76507696-76603813:-,electron_transfer_flavoprotein_alpha_subunit,TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	FGD4--FCF1	2	0	FGD4	3899	chr12:32655272:+	FCF1	42611	chr14:75199434:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,FCF1->FCF1_rRNA-processing_protein,chr14:75179847-75203394:+	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	G2E3--KIAA0391	2	0	G2E3	1150	chr14:31028478:+	KIAA0391	36536	chr14:35735933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	G2E3->G2/M-phase_specific_E3_ubiquitin_protein_ligase,chr14:31028329-31089269:+,KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	LONP2--PHF20	2	0	LONP2	14033	chr16:48368269:+	PHF20	32807	chr20:34389413:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	LONP2->chr16:48278207-48397033:+,lon_peptidase_2,_peroxisomal,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	LRP12--RIMS2	2	0	LRP12	1206	chr8:105601047:-	RIMS2	54448	chr8:105160835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	LRP12->LDL_receptor_related_protein_12,chr8:105501459-105601252:-,RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH69_LUNG	1	1	0.0208	FALSE	25	145	6	90	0	FALSE	ACH-000358
NCIH69_LUNG	PLEKHA1--KNTC1	2	0	PLEKHA1	20904	chr10:124184475:+	KNTC1	68788	chr12:123078823:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1,KNTC1->chr12:123011793-123110943:+,kinetochore_associated_1	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	SSBP2--PPP1CB	2	0	SSBP2	1817	chr5:81046800:-	PPP1CB	39666	chr2:29006773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	TYMS--CLNK	2	0	TYMS	4286	chr18:662320:+	CLNK	33515	chr4:10515221:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	TYMS->chr18:657604-673578:+,thymidylate_synthetase,CLNK->chr4:10488019-10686489:-,cytokine_dependent_hematopoietic_cell_linker	NCIH69_LUNG	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000358
NCIH69_LUNG	RP11-108K3.1--GLDN	1	3	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	NO	0	16	1	0.2	0.0104	0.0313	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH69_LUNG	0.2	1	0.0417	FALSE	0	19	0	46	0	FALSE	ACH-000358
NCIH69_LUNG	AGBL4--AGBL4-IT1	1	1	AGBL4	2274	chr1:50317068:-	AGBL4-IT1	30507	chr1:49840016:-	ONLY_REF_SPLICE	NO	17	0	0.11	1	0.0104	0.0104	NEIGHBORS_OVERLAP:-:-:[97884],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,AGBL4-IT1->AGBL4_intronic_transcript_1,chr1:49839873-49937757:-	NCIH69_LUNG	0.11	1	0.0208	FALSE	0	4	0	2	0	FALSE	ACH-000358
NCIH69_LUNG	AGBL4--AGBL4-IT1	1	1	AGBL4	3399	chr1:50162985:-	AGBL4-IT1	30507	chr1:49840016:-	ONLY_REF_SPLICE	NO	6	0	0.25	1	0.0104	0.0104	NEIGHBORS_OVERLAP:-:-:[97884],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,AGBL4-IT1->AGBL4_intronic_transcript_1,chr1:49839873-49937757:-	NCIH69_LUNG	0.25	1	0.0208	FALSE	75	131	5	14	0	FALSE	ACH-000358
NCIH69_LUNG	FAM172A--NR2F1-AS1	1	1	FAM172A	6776	chr5:93294482:-	NR2F1-AS1	39228	chr5:92747215:-	ONLY_REF_SPLICE	YES	47	98	0.04	0.02	0.0104	0.0104	NEIGHBORS[32421],FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-	NCIH69_LUNG	0.02	0.04	0.0208	FALSE	1	2	0	1	0	FALSE	ACH-000358
NCIH69_LUNG	FAM172A--NR2F1-AS1	1	1	FAM172A	10490	chr5:93159854:-	NR2F1-AS1	39228	chr5:92747215:-	ONLY_REF_SPLICE	YES	116	98	0.02	0.02	0.0104	0.0104	NEIGHBORS[32421],FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-	NCIH69_LUNG	0.02	0.02	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000358
NCIH69_LUNG	FGF14-IT1--FGF14	1	1	FGF14-IT1	2905	chr13:103019607:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	1	41	0.67	0.05	0.0104	0.0104	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	NCIH69_LUNG	0.05	0.67	0.0208	TRUE	80	58	2	10	0	FALSE	ACH-000358
NCIH69_LUNG	NBR2--BRCA1	1	1	NBR2	2224	chr17:41283287:+	BRCA1	36422	chr17:41215968:-	ONLY_REF_SPLICE	YES	38	101	0.05	0.02	0.0104	0.0104	LOCAL_INVERSION:+:-:[127],NBR2->chr17:41277627-41305688:+,neighbor_of_BRCA1_gene_2_(non-protein_coding),BRCA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_1,chr17:41196312-41277500:-	NCIH69_LUNG	0.02	0.05	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000358
NCIH69_LUNG	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	41	0	0.05	1	0.0104	0.0104	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH69_LUNG	0.05	1	0.0208	FALSE	164	806	69	479	0	FALSE	ACH-000358
NCIH69_LUNG	PVT1--SNTB1	1	1	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0104	0.0104	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH69_LUNG	0.2	1	0.0208	TRUE	0	0	0	25	0	FALSE	ACH-000358
NCIH69_LUNG	RNF152--RP11-879F14.1	1	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0104	0.0104	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	NCIH69_LUNG	0.5	1	0.0208	FALSE	275	472	65	43	0	FALSE	ACH-000358
NCIH69_LUNG	RP11-108K3.1--GLDN	1	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	16	1	0.11	0.0104	0.0104	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH69_LUNG	0.11	1	0.0208	FALSE	0	30	1	55	0	FALSE	ACH-000358
NCIH69_LUNG	RP11-35G9.3--NARS	1	1	RP11-35G9.3	1217	chr18:55297750:+	NARS	17885	chr18:55283207:-	ONLY_REF_SPLICE	YES	25	871	0.07	0	0.0104	0.0104	LOCAL_INVERSION:+:-:[8089],RP11-35G9.3->chr18:55297534-55405276:+,NARS->asparaginyl-tRNA_synthetase,chr18:55267888-55289445:-	NCIH69_LUNG	0	0.07	0.0208	FALSE	0	0	0	3	0	FALSE	ACH-000358
NCIH69_LUNG	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0104	0.0104	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH69_LUNG	1	1	0.0208	FALSE	515	4851	409	746	0	FALSE	ACH-000358
NCIH69_LUNG	SF1--FUS	1	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	433	901	0	0	0.0104	0.0104	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH69_LUNG	0	0	0.0208	FALSE	5	20	0	32	0	FALSE	ACH-000358
NCIH69_LUNG	SF1--GNAS	1	1	SF1	3289	chr11:64543970:-	GNAS	32063	chr20:57470667:+	ONLY_REF_SPLICE	YES	433	615	0	0	0.0104	0.0104	GTEx_FI:{Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=3,Pituitary=3,Minor_Salivary_Gland=1,Brain_-_Hypothalamus=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH69_LUNG	0	0	0.0208	FALSE	4	13	1	15	0	FALSE	ACH-000358
NCIH69_LUNG	SHFM1--DLX6-AS1	1	1	SHFM1	1204	chr7:96339000:-	DLX6-AS1	31487	chr7:96598430:-	ONLY_REF_SPLICE	YES	1437	452	0	0	0.0104	0.0104	SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,DLX6-AS1->DLX6_antisense_RNA_1,chr7:96584453-96643377:-	NCIH69_LUNG	0	0	0.0208	FALSE	0	0	0	4	0	FALSE	ACH-000358
NCIH69_LUNG	SPOPL--RPL30	1	1	SPOPL	1319	chr2:139259689:+	RPL30	19196	chr8:99057627:-	ONLY_REF_SPLICE	YES	40	21	0.05	0.09	0.0104	0.0104	SPOPL->chr2:139259371-139331117:+,speckle_type_BTB/POZ_protein_like,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	NCIH69_LUNG	0.05	0.09	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000358
NCIH69_LUNG	TULP4--RP11-732M18.3	1	1	TULP4	2609	chr6:158735300:+	RP11-732M18.3	28124	chr6:158703295:+	ONLY_REF_SPLICE	YES	63	0	0.03	1	0.0104	0.0104	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	NCIH69_LUNG	0.03	1	0.0208	TRUE	121	131	5	12	0	FALSE	ACH-000358
NCIH441_LUNG	EIF2AK2--SULT6B1	589	222	EIF2AK2	4529	chr2:37373996:-	SULT6B1	38020	chr2:37398733:-	ONLY_REF_SPLICE	YES	54	0	0.94	1	4.9141	1.8522	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[10755],EIF2AK2->Oncogene{Bushman},chr2:37326353-37384208:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_2,SULT6B1->chr2:37394963-37423741:-,sulfotransferase_family_6B_member_1	NCIH441_LUNG	0.94	1	6.7663	TRUE	0	0	0	2	0	TRUE	ACH-000638
NCIH441_LUNG	KANSL1--ARL17B	164	68	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	43	80	0.84	0.74	1.3683	0.5673	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH441_LUNG	0.74	0.84	1.9356	TRUE	181	1564	124	196	0	FALSE	ACH-000638
NCIH441_LUNG	MT-TA--MT-TC	116	24	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9678	0.2002	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH441_LUNG	1	1	1.168	FALSE	462	80	0	856	0	FALSE	ACH-000638
NCIH441_LUNG	TIMM23B--LINC00843	73	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.609	0.2086	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH441_LUNG	1	1	0.8176	TRUE	508	994	45	981	0	FALSE	ACH-000638
NCIH441_LUNG	TIMM23--RP11-464F9.1	55	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	113	5	0.34	0.92	0.4589	0.0167	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH441_LUNG	0.34	0.92	0.4756	TRUE	519	3926	326	965	0	FALSE	ACH-000638
NCIH441_LUNG	KIF23--GLCE	49	24	KIF23	6113	chr15:69715668:+	GLCE	29760	chr15:69548133:+	ONLY_REF_SPLICE	YES	104	22	0.41	0.77	0.4088	0.2002	KIF23->chr15:69706585-69740764:+,kinesin_family_member_23,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	NCIH441_LUNG	0.41	0.77	0.609	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	TSPAN14--TMEM254	45	17	TSPAN14	6789	chr10:82249070:+	TMEM254	36132	chr10:81841597:+	ONLY_REF_SPLICE	YES	64	14	0.49	0.82	0.3754	0.1418	TSPAN14->chr10:82213922-82292879:+,tetraspanin_14,TMEM254->chr10:81838402-81852313:+,transmembrane_protein_254	NCIH441_LUNG	0.49	0.82	0.5172	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	ANKRD12--SOGA2	44	8	ANKRD12	11771	chr18:9221997:+	SOGA2	41069	chr18:8783528:+	ONLY_REF_SPLICE	YES	12	8	0.81	0.87	0.3671	0.0667	ANKRD12->ankyrin_repeat_domain_12,chr18:9136226-9285983:+,SOGA2->chr18:8705659-8832776:+	NCIH441_LUNG	0.81	0.87	0.4338	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	MEAF6--SCMH1	38	13	MEAF6	3617	chr1:37974879:-	SCMH1	22318	chr1:41582682:-	ONLY_REF_SPLICE	YES	164	40	0.24	0.56	0.317	0.1085	{Klijn_CCL:Lung=1},MEAF6->MYST/Esa1_associated_factor_6,chr1:37958176-37980375:-,SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila)	NCIH441_LUNG	0.24	0.56	0.4255	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	PCNX--PLEKHD1	40	5	PCNX	23221	chr14:71495508:+	PLEKHD1	61212	chr14:69968451:+	ONLY_REF_SPLICE	YES	17	2	0.73	0.96	0.3337	0.0417	PCNX->chr14:71374122-71582099:+,PLEKHD1->chr14:69951409-69995215:+,pleckstrin_homology_and_coiled-coil_domain_containing_D1	NCIH441_LUNG	0.73	0.96	0.3754	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	ZNF654--HMGB2	40	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3337	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH441_LUNG	1	1	0.3337	TRUE	0	0	0	518	0	FALSE	ACH-000638
NCIH441_LUNG	MT-ND6--MT-TE	29	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.242	0.0417	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH441_LUNG	1	1	0.2837	FALSE	499	1288	110	792	0	FALSE	ACH-000638
NCIH441_LUNG	RELA--PCNXL3	22	10	RELA	4429	chr11:65427137:-	PCNXL3	13626	chr11:65384721:+	ONLY_REF_SPLICE	YES	278	73	0.1	0.3	0.1835	0.0834	LOCAL_INVERSION:-:+:[16157],RELA->Oncogene{Bushman},RELA_proto-oncogene,_NF-kB_subunit,chr11:65421067-65430565:-,PCNXL3->chr11:65383244-65404910:+	NCIH441_LUNG	0.1	0.3	0.2669	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	MT-ND6--MT-TE	21	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1752	0.0584	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH441_LUNG	1	1	0.2336	FALSE	499	1288	110	792	0	FALSE	ACH-000638
NCIH441_LUNG	RP11-114H23.1--RP11-114H23.2	19	9	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	3	0	0.9	1	0.1585	0.0751	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH441_LUNG	0.9	1	0.2336	FALSE	81	155	12	160	0	FALSE	ACH-000638
NCIH441_LUNG	MT-TA--MT-TC	16	19	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1335	0.1585	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH441_LUNG	1	1	0.292	FALSE	462	80	0	856	0	FALSE	ACH-000638
NCIH441_LUNG	MT-ND3--MT-ATP8	19	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1585	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	1	1	0.1585	FALSE	351	233	23	137	0	FALSE	ACH-000638
NCIH441_LUNG	EIF2AK2--SULT6B1	7	41	EIF2AK2	4529	chr2:37373996:-	SULT6B1	39177	chr2:37395208:-	ONLY_REF_SPLICE	YES	54	105	0.47	0.31	0.0584	0.3421	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[10755],EIF2AK2->Oncogene{Bushman},chr2:37326353-37384208:-,eukaryotic_translation_initiation_factor_2_alpha_kinase_2,SULT6B1->chr2:37394963-37423741:-,sulfotransferase_family_6B_member_1	NCIH441_LUNG	0.31	0.47	0.4005	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	MT-TA--MT-TC	8	32	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0.267	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH441_LUNG	1	1	0.3337	FALSE	462	80	0	856	0	FALSE	ACH-000638
NCIH441_LUNG	LRRC8C--RHOT1	13	6	LRRC8C	1251	chr1:90098881:+	RHOT1	24001	chr17:30498062:+	ONLY_REF_SPLICE	YES	0	54	1	0.26	0.1085	0.0501	LRRC8C->chr1:90098631-90235462:+,leucine-rich_repeat_containing_8_family_member_C,RHOT1->chr17:30469473-30580393:+,ras_homolog_family_member_T1	NCIH441_LUNG	0.26	1	0.1586	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	RELA--RNASEH2C	13	3	RELA	2408	chr11:65429158:-	RNASEH2C	16424	chr11:65482788:-	ONLY_REF_SPLICE	YES	246	5	0.06	0.76	0.1085	0.025	LOCAL_REARRANGEMENT:-:[51802],RELA->Oncogene{Bushman},RELA_proto-oncogene,_NF-kB_subunit,chr11:65421067-65430565:-,RNASEH2C->chr11:65482367-65488418:-,ribonuclease_H2_subunit_C	NCIH441_LUNG	0.06	0.76	0.1335	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	PLXDC1--TAF13	13	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1085	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH441_LUNG	1	1	0.1085	TRUE	7	10	0	216	0	FALSE	ACH-000638
NCIH441_LUNG	MT-CO1--MT-ND1	10	9	MT-CO1	1642	chrM:6545:+	MT-ND1	6026	chrM:3790:+	INCL_NON_REF_SPLICE	YES	18157	6784	0	0	0.0834	0.0751	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH441_LUNG	0	0	0.1585	FALSE	39	30	6	19	0	FALSE	ACH-000638
NCIH441_LUNG	RP11-96H19.1--RP11-446N19.1	10	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.0834	0.0751	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH441_LUNG	0.95	1	0.1585	FALSE	515	4851	409	746	0	FALSE	ACH-000638
NCIH441_LUNG	MT-ND6--MT-TE	10	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0.0417	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH441_LUNG	1	1	0.1251	FALSE	499	1288	110	792	0	FALSE	ACH-000638
NCIH441_LUNG	MUC4--MT-ATP8	10	1	MUC4	15884	chr3:195506714:-	MT-ATP8	42546	chrM:8481:+	INCL_NON_REF_SPLICE	YES	1066	424	0.01	0.03	0.0834	0.0083	MUC4->Oncogene{Bushman},chr3:195473636-195539148:-,mucin_4,_cell_surface_associated,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	0.01	0.03	0.0917	FALSE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	MUC4--MT-ATP8	10	1	MUC4	14495	chr3:195508103:-	MT-ATP8	42502	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1307	0	0.01	1	0.0834	0.0083	MUC4->Oncogene{Bushman},chr3:195473636-195539148:-,mucin_4,_cell_surface_associated,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	0.01	1	0.0917	FALSE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	MT-TA--MT-TC	9	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0751	0.0083	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH441_LUNG	1	1	0.0834	FALSE	462	80	0	856	0	FALSE	ACH-000638
NCIH441_LUNG	RP11-59N23.1--CMAS	9	1	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	7	132	0.59	0.07	0.0751	0.0083	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH441_LUNG	0.07	0.59	0.0834	TRUE	21	102	17	28	0	FALSE	ACH-000638
NCIH441_LUNG	MT-CO1--MT-ND1	8	4	MT-CO1	1577	chrM:6480:+	MT-ND1	5559	chrM:3323:+	INCL_NON_REF_SPLICE	YES	15822	0	0	1	0.0667	0.0334	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH441_LUNG	0	1	0.1001	FALSE	39	30	6	19	0	FALSE	ACH-000638
NCIH441_LUNG	MUC4--MT-ATP8	9	0	MUC4	8879	chr3:195513719:-	MT-ATP8	42502	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0751	0	MUC4->Oncogene{Bushman},chr3:195473636-195539148:-,mucin_4,_cell_surface_associated,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	1	1	0.0751	FALSE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	FLOT1--MDC1-AS1	7	5	FLOT1	3576	chr6:30707935:-	MDC1-AS1	11220	chr6:30680089:+	ONLY_REF_SPLICE	YES	558	0	0.02	1	0.0584	0.0417	LOCAL_INVERSION:-:+:[14525],FLOT1->chr6:30695486-30710510:-,flotillin_1,MDC1-AS1->MDC1_antisense_RNA_1,chr6:30670844-30680961:+	NCIH441_LUNG	0.02	1	0.1001	TRUE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	MUC4--MT-ATP8	8	1	MUC4	14591	chr3:195508007:-	MT-ATP8	42502	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1240	0	0.01	1	0.0667	0.0083	MUC4->Oncogene{Bushman},chr3:195473636-195539148:-,mucin_4,_cell_surface_associated,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	0.01	1	0.075	FALSE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	MUC4--MT-ATP8	8	0	MUC4	8975	chr3:195513623:-	MT-ATP8	42502	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0	MUC4->Oncogene{Bushman},chr3:195473636-195539148:-,mucin_4,_cell_surface_associated,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	1	1	0.0667	FALSE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	MT-CO1--MT-ND1	5	11	MT-CO1	1699	chrM:6602:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	18555	5972	0	0	0.0417	0.0918	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH441_LUNG	0	0	0.1335	FALSE	39	30	6	19	0	FALSE	ACH-000638
NCIH441_LUNG	MT-CO1--MT-ND1	5	11	MT-CO1	1653	chrM:6556:+	MT-ND1	5761	chrM:3525:+	INCL_NON_REF_SPLICE	YES	18928	6132	0	0	0.0417	0.0918	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH441_LUNG	0	0	0.1335	FALSE	39	30	6	19	0	FALSE	ACH-000638
NCIH441_LUNG	MT-CO1--MT-ND1	7	1	MT-CO1	1653	chrM:6556:+	MT-ND1	6262	chrM:4026:+	INCL_NON_REF_SPLICE	YES	18928	3906	0	0	0.0584	0.0083	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH441_LUNG	0	0	0.0667	FALSE	39	30	6	19	0	FALSE	ACH-000638
NCIH441_LUNG	MUC4--MT-ATP8	7	1	MUC4	16175	chr3:195506423:-	MT-ATP8	42502	chrM:8437:+	INCL_NON_REF_SPLICE	YES	766	0	0.01	1	0.0584	0.0083	MUC4->Oncogene{Bushman},chr3:195473636-195539148:-,mucin_4,_cell_surface_associated,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	0.01	1	0.0667	FALSE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	MATR3--GUSBP2	7	0	MATR3	2720	chr5:138611839:+	GUSBP2	37203	chr6:26856976:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0584	0	MATR3->chr5:138609441-138667360:+,matrin_3,GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2	NCIH441_LUNG	1	1	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	MT-ND6--MT-TE	4	12	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0.1001	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH441_LUNG	1	1	0.1335	FALSE	499	1288	110	792	0	FALSE	ACH-000638
NCIH441_LUNG	MT-ND6--MT-TE	4	12	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0334	0.1001	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH441_LUNG	0.89	1	0.1335	FALSE	499	1288	110	792	0	FALSE	ACH-000638
NCIH441_LUNG	MT-ND6--MT-TE	4	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0.0834	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH441_LUNG	1	1	0.1168	FALSE	499	1288	110	792	0	FALSE	ACH-000638
NCIH441_LUNG	KANSL1--ARL17B	2	16	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	NO	43	57	0.3	0.24	0.0167	0.1335	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH441_LUNG	0.24	0.3	0.1502	TRUE	20	16	0	28	0	FALSE	ACH-000638
NCIH441_LUNG	FHIT--RP11-451B8.1	4	4	FHIT	6726	chr3:61027719:-	RP11-451B8.1	25979	chr3:87780900:-	ONLY_REF_SPLICE	YES	11	0	0.42	1	0.0334	0.0334	FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad,RP11-451B8.1->chr3:87780552-87842779:-	NCIH441_LUNG	0.42	1	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	RP11-96H19.1--RP11-446N19.1	2	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0.1001	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH441_LUNG	1	1	0.1168	FALSE	467	2173	244	435	0	FALSE	ACH-000638
NCIH441_LUNG	UBR4--CAPZB	5	0	UBR4	72084	chr1:19430578:-	CAPZB	107885	chr1:19671746:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0	{Klijn_CCL:Colo-Rectal=1},UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	NCIH441_LUNG	1	1	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	KANSL1--ARL17B	2	11	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	66	80	0.16	0.14	0.0167	0.0918	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH441_LUNG	0.14	0.16	0.1085	TRUE	105	90	7	93	0	FALSE	ACH-000638
NCIH441_LUNG	SPC25--DHRS9	4	3	SPC25	8048	chr2:169730095:-	DHRS9	26025	chr2:169952054:+	ONLY_REF_SPLICE	YES	50	213	0.12	0.03	0.0334	0.025	{Klijn_CCL:Lung=1},SPC25->SPC25,_NDC80_kinetochore_complex_component,chr2:169690642-169769881:-,DHRS9->chr2:169921299-169952677:+,dehydrogenase/reductase_(SDR_family)_member_9	NCIH441_LUNG	0.03	0.12	0.0584	TRUE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	MT-CO1--MT-ND1	4	2	MT-CO1	1558	chrM:6461:+	MT-ND1	6029	chrM:3793:+	INCL_NON_REF_SPLICE	YES	15660	6760	0	0	0.0334	0.0167	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH441_LUNG	0	0	0.0501	FALSE	39	30	6	19	0	FALSE	ACH-000638
NCIH441_LUNG	RP11-114H23.1--RP11-114H23.2	3	6	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	3	0	0.75	1	0.025	0.0501	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH441_LUNG	0.75	1	0.0751	FALSE	81	155	12	160	0	FALSE	ACH-000638
NCIH441_LUNG	MUC4--MT-ATP8	4	1	MUC4	12735	chr3:195509863:-	MT-ATP8	42533	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1739	9	0	0.36	0.0334	0.0083	MUC4->Oncogene{Bushman},chr3:195473636-195539148:-,mucin_4,_cell_surface_associated,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	0	0.36	0.0417	FALSE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	MUC4--MT-ATP8	4	1	MUC4	10959	chr3:195511639:-	MT-ATP8	42533	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1457	9	0	0.36	0.0334	0.0083	MUC4->Oncogene{Bushman},chr3:195473636-195539148:-,mucin_4,_cell_surface_associated,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	0	0.36	0.0417	FALSE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	41	0.62	0.11	0.0334	0.0083	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH441_LUNG	0.11	0.62	0.0417	FALSE	16	356	14	466	0	FALSE	ACH-000638
NCIH441_LUNG	KRT80--KRT15	4	0	KRT80	1362	chr12:52585423:-	KRT15	19263	chr17:39672508:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	KRT80->chr12:52562780-52585784:-,keratin_80,KRT15->chr17:39669995-39678781:-,keratin_15	NCIH441_LUNG	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	MUC4--MT-ATP8	4	0	MUC4	9759	chr3:195512839:-	MT-ATP8	42533	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	MUC4->Oncogene{Bushman},chr3:195473636-195539148:-,mucin_4,_cell_surface_associated,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	1	1	0.0334	FALSE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	MT-CO1--MT-ND1	3	2	MT-CO1	1588	chrM:6491:+	MT-ND1	5761	chrM:3525:+	INCL_NON_REF_SPLICE	YES	14991	6132	0	0	0.025	0.0167	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH441_LUNG	0	0	0.0417	FALSE	39	30	6	19	0	FALSE	ACH-000638
NCIH441_LUNG	KIF23--GLCE	2	5	KIF23	5219	chr15:69714774:+	GLCE	29760	chr15:69548133:+	ONLY_REF_SPLICE	YES	77	22	0.08	0.24	0.0167	0.0417	KIF23->chr15:69706585-69740764:+,kinesin_family_member_23,GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase	NCIH441_LUNG	0.08	0.24	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	MUC4--MT-ATP8	3	1	MUC4	15557	chr3:195507041:-	MT-ATP8	42551	chrM:8486:+	INCL_NON_REF_SPLICE	NO	1126	665	0	0.01	0.025	0.0083	MUC4->Oncogene{Bushman},chr3:195473636-195539148:-,mucin_4,_cell_surface_associated,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	0	0.01	0.0333	FALSE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	MUC4--MT-ATP8	3	1	MUC4	11687	chr3:195510911:-	MT-ATP8	42480	chrM:8415:+	INCL_NON_REF_SPLICE	YES	1548	0	0	1	0.025	0.0083	MUC4->Oncogene{Bushman},chr3:195473636-195539148:-,mucin_4,_cell_surface_associated,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	0	1	0.0333	FALSE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	MUC4--MT-ATP8	3	1	MUC4	12437	chr3:195510161:-	MT-ATP8	42551	chrM:8486:+	INCL_NON_REF_SPLICE	NO	1672	665	0	0.01	0.025	0.0083	MUC4->Oncogene{Bushman},chr3:195473636-195539148:-,mucin_4,_cell_surface_associated,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	0	0.01	0.0333	FALSE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	MUC4--MT-ATP8	3	1	MUC4	13637	chr3:195508961:-	MT-ATP8	42551	chrM:8486:+	INCL_NON_REF_SPLICE	NO	1676	665	0	0.01	0.025	0.0083	MUC4->Oncogene{Bushman},chr3:195473636-195539148:-,mucin_4,_cell_surface_associated,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	0	0.01	0.0333	FALSE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	MUC4--MT-ATP8	3	1	MUC4	26431	chr3:195490347:-	MT-ATP8	42546	chrM:8481:+	INCL_NON_REF_SPLICE	NO	187	424	0.02	0.01	0.025	0.0083	MUC4->Oncogene{Bushman},chr3:195473636-195539148:-,mucin_4,_cell_surface_associated,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	0.01	0.02	0.0333	FALSE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	MUC4--MT-ATP8	3	1	MUC4	15311	chr3:195507287:-	MT-ATP8	42502	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1165	0	0	1	0.025	0.0083	MUC4->Oncogene{Bushman},chr3:195473636-195539148:-,mucin_4,_cell_surface_associated,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	0	1	0.0333	FALSE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	MUC4--MT-ATP8	3	1	MUC4	16757	chr3:195505841:-	MT-ATP8	42551	chrM:8486:+	INCL_NON_REF_SPLICE	NO	146	665	0.03	0.01	0.025	0.0083	MUC4->Oncogene{Bushman},chr3:195473636-195539148:-,mucin_4,_cell_surface_associated,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	0.01	0.03	0.0333	FALSE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	MUC4--MT-ATP8	3	1	MUC4	13013	chr3:195509585:-	MT-ATP8	42551	chrM:8486:+	INCL_NON_REF_SPLICE	NO	1750	665	0	0.01	0.025	0.0083	MUC4->Oncogene{Bushman},chr3:195473636-195539148:-,mucin_4,_cell_surface_associated,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	0	0.01	0.0333	FALSE	0	0	0	1	0	FALSE	ACH-000638
NCIH441_LUNG	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0083	0.0751	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH441_LUNG	0.91	1	0.0834	FALSE	407	2205	196	549	0	FALSE	ACH-000638
NCIH441_LUNG	MT-CO1--MT-ND1	3	0	MT-CO1	1243	chrM:6146:+	MT-ND1	5643	chrM:3407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH441_LUNG	1	1	0.025	FALSE	39	29	6	19	0	FALSE	ACH-000638
NCIH441_LUNG	MT-ND3--MT-ATP8	3	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH441_LUNG	1	1	0.025	FALSE	351	233	23	137	0	FALSE	ACH-000638
NCIH441_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH441_LUNG	1	1	0.025	FALSE	499	1288	110	792	0	FALSE	ACH-000638
NCIH441_LUNG	PIAS3--AP3M2	3	0	PIAS3	5541	chr1:145580322:+	AP3M2	25086	chr8:42027578:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	PIAS3->Oncogene{Bushman},chr1:145575233-145586546:+,protein_inhibitor_of_activated_STAT_3,AP3M2->Oncogene{Bushman},adaptor_related_protein_complex_3_mu_2_subunit,chr8:42010464-42029191:+	NCIH441_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	LRRC8C--RHOT1	1	6	LRRC8C	1251	chr1:90098881:+	RHOT1	24005	chr17:30498066:+	ONLY_REF_SPLICE	YES	0	49	1	0.12	0.0083	0.0501	LRRC8C->chr1:90098631-90235462:+,leucine-rich_repeat_containing_8_family_member_C,RHOT1->chr17:30469473-30580393:+,ras_homolog_family_member_T1	NCIH441_LUNG	0.12	1	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	HP1BP3--CAPZB	2	1	HP1BP3	1129	chr1:21113688:-	CAPZB	26857	chr1:19746244:-	ONLY_REF_SPLICE	YES	58	62	0.05	0.05	0.0167	0.0083	GTEx_FI:{Small_Intestine=[count:1=pct:1.8],Blood=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	NCIH441_LUNG	0.05	0.05	0.025	TRUE	3	0	0	4	0	FALSE	ACH-000638
NCIH441_LUNG	CAPN8--EIF3H	2	0	CAPN8	1325	chr1:223853112:-	EIF3H	35994	chr8:117671219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	CAPN8->calpain_8,chr1:223711349-223853436:-,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	CLIC4--GRHL3	2	0	CLIC4	1269	chr1:25072116:+	GRHL3	16925	chr1:24657916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,GRHL3->chr1:24645812-24690972:+,grainyhead_like_transcription_factor_3	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	DNAJC27-AS1--PRIM2	2	0	DNAJC27-AS1	1843	chr2:25195101:+	PRIM2	28178	chr6:57372288:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	DNAJC27-AS1->DNAJC27_antisense_RNA_1,chr2:25194259-25262563:+,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	FANCA--URAHP	2	0	FANCA	4240	chr16:89877115:-	URAHP	44436	chr16:90113504:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-,URAHP->chr16:90106169-90114181:-,urate_(hydroxyiso-)_hydrolase,_pseudogene	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	FBXO32--ZHX1	2	0	FBXO32	4717	chr8:124544138:-	ZHX1	22862	chr8:124279626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	FBXO32->F-box_protein_32,chr8:124510129-124553446:-,ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	GATS--PILRB	2	0	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	NCIH441_LUNG	1	1	0.0167	TRUE	57	41	2	35	0	FALSE	ACH-000638
NCIH441_LUNG	GOLM1--NAA35	2	0	GOLM1	7513	chr9:88667452:-	NAA35	32119	chr9:88611314:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_v2:{count=2;pct=0.02%;dist=Minor_Salivary_Gland=1,Testis=1},LOCAL_INVERSION:-:+:[3848],GOLM1->chr9:88641061-88715088:-,golgi_membrane_protein_1,NAA35->N(alpha)-acetyltransferase_35,_NatC_auxiliary_subunit,chr9:88556061-88637213:+	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	ITCH--RAC1	2	0	ITCH	20088	chr20:33065665:+	RAC1	39204	chr7:6438293:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx&tcga_normals:1/3694=0.03%,ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,RAC1->ArcherDX_panel,FoundationOne_panel,chr7:6414154-6443608:+,ras-related_C3_botulinum_toxin_substrate_1_(rho_family,_small_GTP_binding_protein_Rac1)	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	KANSL1--ARL17B	1	4	KANSL1	7536	chr17:44248221:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	66	57	0.07	0.08	0.0083	0.0334	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH441_LUNG	0.07	0.08	0.0417	TRUE	0	0	0	6	0	FALSE	ACH-000638
NCIH441_LUNG	MATR3--GUSBP2	2	0	MATR3	2720	chr5:138611839:+	GUSBP2	39437	chr6:26853222:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	MATR3->chr5:138609441-138667360:+,matrin_3,GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	MLLT4--FAM120B	2	0	MLLT4	25107	chr6:168325771:+	FAM120B	57396	chr6:170697375:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},MLLT4->Oncogene{Bushman},chr6:168227602-168372703:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_4,FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	NCEH1--ECT2	2	0	NCEH1	1372	chr3:172428637:-	ECT2	15619	chr3:172472299:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	LOCAL_INVERSION:-:+:[39464],NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,ECT2->Oncogene{Bushman},chr3:172468472-172539264:+,epithelial_cell_transforming_2	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	NCK1--STAG1	2	0	NCK1	1112	chr3:136581161:+	STAG1	22252	chr3:136261037:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+,STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	RP13-188A5.1--KLF8	2	0	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	NCIH441_LUNG	1	1	0.0167	TRUE	10	78	6	20	0	FALSE	ACH-000638
NCIH441_LUNG	RPL30--FAM118B	2	0	RPL30	2527	chr8:99057171:-	FAM118B	22253	chr11:126132015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30,FAM118B->chr11:126081309-126132881:+,family_with_sequence_similarity_118_member_B	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	S100A6--PHTF2	2	0	S100A6	2043	chr1:153507678:-	PHTF2	6905	chr7:77469538:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-,PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	SCNN1A--CCNDBP1	2	0	SCNN1A	4236	chr12:6483534:-	CCNDBP1	21984	chr15:43482523:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	SCNN1A->chr12:6456009-6486896:-,sodium_channel_epithelial_1_alpha_subunit,CCNDBP1->chr15:43477316-43487396:+,cyclin_D1_binding_protein_1	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	SIPA1L3--LUC7L	2	0	SIPA1L3	17292	chr19:38621412:+	LUC7L	45683	chr16:258187:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,LUC7L->LUC7_like,chr16:238968-279462:-	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	SMCO4--ME3	2	0	SMCO4	4410	chr11:93232442:-	ME3	14943	chr11:86219909:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	SMCO4->chr11:93211638-93276674:-,single-pass_membrane_protein_with_coiled-coil_domains_4,ME3->Oncogene{Bushman},chr11:86152150-86383678:-,malic_enzyme_3	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	SPATA6--MAST2	2	0	SPATA6	17065	chr1:48821342:-	MAST2	28511	chr1:46290105:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	SPATA6->chr1:48761044-48937845:-,spermatogenesis_associated_6,MAST2->chr1:46252659-46501796:+,microtubule_associated_serine/threonine_kinase_2	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	TEX9--WHSC1	2	0	TEX9	1270	chr15:56536476:+	WHSC1	28605	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	TEX9->chr15:56536207-56738195:+,testis_expressed_9,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	THEM4--S100A10	2	0	THEM4	1449	chr1:151881836:-	S100A10	16148	chr1:151958727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	LOCAL_REARRANGEMENT:-:[73107],THEM4->chr1:151846060-151882284:-,thioesterase_superfamily_member_4,S100A10->Oncogene{Bushman},S100_calcium_binding_protein_A10,chr1:151955391-151966866:-	NCIH441_LUNG	1	1	0.0167	TRUE	0	2	0	1	2	TRUE	ACH-000638
NCIH441_LUNG	TM7SF3--PLEKHA5	2	0	TM7SF3	1357	chr12:27167011:-	PLEKHA5	31237	chr12:19406874:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	TM7SF3->chr12:27126128-27167367:-,transmembrane_7_superfamily_member_3,PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	TRA2B--ARHGAP32	2	0	TRA2B	1312	chr3:185655613:-	ARHGAP32	29548	chr11:128936763:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),ARHGAP32->Rho_GTPase_activating_protein_32,chr11:128834955-129149219:-	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	USMG5--YME1L1	2	0	USMG5	4193	chr10:105151948:-	YME1L1	22101	chr10:27415715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	USMG5->chr10:105148798-105156223:-,up-regulated_during_skeletal_muscle_growth_5_homolog_(mouse),YME1L1->YME1_like_1_ATPase,chr10:27399383-27444195:-	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	USP10--FHL2	2	0	USP10	1134	chr16:84733717:+	FHL2	29013	chr2:106002997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,FHL2->Oncogene{Bushman},chr2:105974169-106054970:-,four_and_a_half_LIM_domains_2	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	ZDHHC9--THOC2	2	0	ZDHHC9	2953	chrX:128975755:-	THOC2	26157	chrX:122805612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	ZDHHC9->chrX:128937264-128977885:-,zinc_finger_DHHC-type_containing_9,THOC2->THO_complex_2,chrX:122734412-122866906:-	NCIH441_LUNG	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0083	0.0167	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH441_LUNG	0.75	1	0.025	TRUE	62	24	1	171	0	FALSE	ACH-000638
NCIH441_LUNG	TSPAN14--TMEM254	1	2	TSPAN14	1206	chr10:82214127:+	TMEM254	36132	chr10:81841597:+	ONLY_REF_SPLICE	YES	0	14	1	0.18	0.0083	0.0167	TSPAN14->chr10:82213922-82292879:+,tetraspanin_14,TMEM254->chr10:81838402-81852313:+,transmembrane_protein_254	NCIH441_LUNG	0.18	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	CRLF3--MYO18A	1	1	CRLF3	6354	chr17:29124329:-	MYO18A	23881	chr17:27494039:-	ONLY_REF_SPLICE	NO	27	9	0.07	0.18	0.0083	0.0083	CRLF3->chr17:29096406-29151794:-,cytokine_receptor_like_factor_3,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	NCIH441_LUNG	0.07	0.18	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	FAM13B--DPCR1	1	1	FAM13B	8313	chr5:137353991:-	DPCR1	33621	chr6:30916324:+	ONLY_REF_SPLICE	YES	24	0	0.08	1	0.0083	0.0083	FAM13B->chr5:137273649-137387650:-,family_with_sequence_similarity_13_member_B,DPCR1->chr6:30908749-30921998:+,diffuse_panbronchiolitis_critical_region_1	NCIH441_LUNG	0.08	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000638
NCIH441_LUNG	ST7--MET	1	1	ST7	1454	chr7:116593745:+	MET	44516	chr7:116371722:+	ONLY_REF_SPLICE	YES	44	1131	0.04	0	0.0083	0.0083	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1],ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	NCIH441_LUNG	0	0.04	0.0166	FALSE	0	1	0	3	0	FALSE	ACH-000638
NCIH441_LUNG	TMEM123--BIRC2	1	1	TMEM123	5695	chr11:102319543:-	BIRC2	22451	chr11:102248227:+	ONLY_REF_SPLICE	YES	479	105	0	0.02	0.0083	0.0083	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},{Klijn_CCL:Brain=1},LOCAL_INVERSION:-:+:[17662],TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	NCIH441_LUNG	0	0.02	0.0166	FALSE	1	3	0	8	0	FALSE	ACH-000638
G292CLONEA141B1_BONE	ANPEP--AP3S2	1662	189	ANPEP	1630	chr15:90358004:-	AP3S2	31622	chr15:90380954:-	ONLY_REF_SPLICE	YES	63	74	0.97	0.96	14.8382	1.6874	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[15198],ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,AP3S2->adaptor_related_protein_complex_3_sigma_2_subunit,chr15:90373831-90437574:-	G292CLONEA141B1_BONE	0.96	0.97	16.5256	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	GNS--ZFC3H1	676	169	GNS	11844	chr12:65130784:-	ZFC3H1	27226	chr12:72054207:-	ONLY_REF_SPLICE	YES	845	24	0.5	0.97	6.0353	1.5088	GNS->chr12:65107225-65153227:-,glucosamine_(N-acetyl)-6-sulfatase,ZFC3H1->chr12:72003252-72061505:-,zinc_finger_C3H1-type_containing	G292CLONEA141B1_BONE	0.5	0.97	7.5441	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MORF4L1--CTD-2147F2.1	691	15	MORF4L1	5376	chr15:79165399:+	CTD-2147F2.1	25179	chr15:97954422:+	ONLY_REF_SPLICE	YES	35	0	0.95	1	6.1692	0.1339	MORF4L1->chr15:79102829-79190475:+,mortality_factor_4_like_1,CTD-2147F2.1->chr15:97839111-97975324:+	G292CLONEA141B1_BONE	0.95	1	6.3031	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	SRGAP1--RP11-315E17.1	329	72	SRGAP1	6435	chr12:64410792:+	RP11-315E17.1	36577	chr12:81811077:+	ONLY_REF_SPLICE	YES	51	0	0.89	1	2.9373	0.6428	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,RP11-315E17.1->chr12:81771821-81866733:+	G292CLONEA141B1_BONE	0.89	1	3.5801	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	KIAA0196--MDM1	305	120	KIAA0196	1226	chr8:126103857:-	MDM1	45555	chr12:68696652:-	ONLY_REF_SPLICE	YES	257	53	0.62	0.89	2.723	1.0714	KIAA0196->KIAA0196,chr8:126036502-126104082:-,MDM1->Mdm1_nuclear_protein,chr12:68666223-68726161:-	G292CLONEA141B1_BONE	0.62	0.89	3.7944	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MED13L--TMEM132B	319	62	MED13L	6460	chr12:116534474:-	TMEM132B	47554	chr12:125900077:+	ONLY_REF_SPLICE	YES	39	0	0.91	1	2.848	0.5535	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,TMEM132B->chr12:125671382-126146917:+,transmembrane_protein_132B	G292CLONEA141B1_BONE	0.91	1	3.4015	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	SRGAP1--ACSS3	281	19	SRGAP1	1591	chr12:64238663:+	ACSS3	49034	chr12:81610680:+	ONLY_REF_SPLICE	YES	213	0	0.58	1	2.5088	0.1696	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,ACSS3->acyl-CoA_synthetase_short-chain_family_member_3,chr12:81331594-81650533:+	G292CLONEA141B1_BONE	0.58	1	2.6784	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	DAXX--KIFC3	242	79	DAXX	7317	chr6:33286774:-	KIFC3	31923	chr16:57800897:-	ONLY_REF_SPLICE	YES	0	192	1	0.63	2.1606	0.7053	DAXX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:33286335-33297046:-,death-domain_associated_protein,KIFC3->chr16:57792129-57896957:-,kinesin_family_member_C3	G292CLONEA141B1_BONE	0.63	1	2.8659	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	COL5A1--ECE1	169	38	COL5A1	7112	chr9:137593179:+	ECE1	74546	chr1:21616649:-	ONLY_REF_SPLICE	YES	108	127	0.66	0.62	1.5088	0.3393	COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1,ECE1->chr1:21543740-21671997:-,endothelin_converting_enzyme_1	G292CLONEA141B1_BONE	0.62	0.66	1.8481	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	FDFT1--CTSB	160	46	FDFT1	11742	chr8:11689179:+	CTSB	30526	chr8:11706673:-	ONLY_REF_SPLICE	YES	629	3048	0.25	0.06	1.4285	0.4107	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[3215],FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1,CTSB->Oncogene{Bushman},cathepsin_B,chr8:11700033-11726957:-	G292CLONEA141B1_BONE	0.06	0.25	1.8392	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	COL22A1--CHST12	115	29	COL22A1	43521	chr8:139688801:-	CHST12	75861	chr7:2472198:+	ONLY_REF_SPLICE	YES	81	10	0.64	0.94	1.0267	0.2589	COL22A1->chr8:139600478-139926249:-,collagen_type_XXII_alpha_1,CHST12->carbohydrate_(chondroitin_4)_sulfotransferase_12,chr7:2443223-2474242:+	G292CLONEA141B1_BONE	0.64	0.94	1.2856	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	KIFC3--KATNB1	116	5	KIFC3	29908	chr16:57792187:-	KATNB1	44174	chr16:57791143:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0356	0.0446	LOCAL_INVERSION:-:+:[967],KIFC3->chr16:57792129-57896957:-,kinesin_family_member_C3,KATNB1->chr16:57769642-57791162:+,katanin_regulatory_subunit_B1	G292CLONEA141B1_BONE	0.99	1	1.0802	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	TIMM23B--LINC00843	91	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8124	0.1071	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	G292CLONEA141B1_BONE	0.99	1	0.9195	TRUE	508	994	45	981	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	ME3--FAM19A2	53	16	ME3	5719	chr11:86267595:-	FAM19A2	47697	chr12:62261207:-	ONLY_REF_SPLICE	YES	14	1	0.83	0.99	0.4732	0.1428	ME3->Oncogene{Bushman},chr11:86152150-86383678:-,malic_enzyme_3,FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2	G292CLONEA141B1_BONE	0.83	0.99	0.616	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MDM2--TVP23C	52	12	MDM2	1316	chr12:69202271:+	TVP23C	27018	chr17:15450462:-	ONLY_REF_SPLICE	YES	58	231	0.52	0.22	0.4643	0.1071	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae)	G292CLONEA141B1_BONE	0.22	0.52	0.5714	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	DOCK1--GFM1	45	18	DOCK1	1155	chr10:128594132:+	GFM1	74087	chr3:158376711:+	ONLY_REF_SPLICE	YES	40	63	0.61	0.5	0.4018	0.1607	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,GFM1->G_elongation_factor,_mitochondrial_1,chr3:158362067-158410364:+	G292CLONEA141B1_BONE	0.5	0.61	0.5625	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	TIMM23--RP11-464F9.1	47	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4196	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	G292CLONEA141B1_BONE	1	1	0.4196	TRUE	519	3926	326	965	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	ASAP1--TG	42	12	ASAP1	3357	chr8:131414131:-	TG	48759	chr8:133880360:+	ONLY_REF_SPLICE	YES	69	0	0.44	1	0.375	0.1071	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,TG->chr8:133879203-134147147:+,thyroglobulin	G292CLONEA141B1_BONE	0.44	1	0.4821	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MT-ND6--MT-TE	43	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3839	0.0446	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G292CLONEA141B1_BONE	1	1	0.4285	FALSE	499	1288	110	792	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	RP11-680G10.1--GSE1	41	13	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.9	0.366	0.1161	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	G292CLONEA141B1_BONE	0.9	1	0.4821	TRUE	458	1351	185	561	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	MSRB3--TBK1	39	12	MSRB3	9323	chr12:65762806:+	TBK1	34907	chr12:64889263:+	ONLY_REF_SPLICE	YES	218	70	0.19	0.42	0.3482	0.1071	MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3,TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+	G292CLONEA141B1_BONE	0.19	0.42	0.4553	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	FAM49B--MSRB3	37	18	FAM49B	13578	chr8:130891635:-	MSRB3	45823	chr12:65881784:+	ONLY_REF_SPLICE	YES	313	1	0.15	0.98	0.3303	0.1607	FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3	G292CLONEA141B1_BONE	0.15	0.98	0.491	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	KIF3B--NXPE2	34	21	KIF3B	5228	chr20:30904677:+	NXPE2	17207	chr11:114550379:+	ONLY_REF_SPLICE	YES	37	0	0.6	1	0.3036	0.1875	KIF3B->chr20:30865467-30922814:+,kinesin_family_member_3B,NXPE2->chr11:114549108-114579362:+,neurexophilin_and_PC-esterase_domain_family_member_2	G292CLONEA141B1_BONE	0.6	1	0.4911	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	ZFPM2--RP11-152P17.2	37	4	ZFPM2	1290	chr8:106331209:+	RP11-152P17.2	28585	chr8:106939945:-	ONLY_REF_SPLICE	YES	6	0	0.87	1	0.3303	0.0357	NEIGHBORS_OVERLAP:+:-:[24286],ZFPM2->chr8:106330920-106816760:+,zinc_finger_protein,_FOG_family_member_2,RP11-152P17.2->chr8:106792474-107072752:-	G292CLONEA141B1_BONE	0.87	1	0.366	FALSE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	CTTN--DISC1FP1	31	11	CTTN	17084	chr11:70277386:+	DISC1FP1	37005	chr11:90648038:+	ONLY_REF_SPLICE	YES	710	0	0.06	1	0.2768	0.0982	CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin,DISC1FP1->DISC1_fusion_partner_1_(non-protein_coding),chr11:89984400-90648220:+	G292CLONEA141B1_BONE	0.06	1	0.375	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	KANSL1--ARL17B	30	13	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	15	7	0.74	0.86	0.2678	0.1161	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	G292CLONEA141B1_BONE	0.74	0.86	0.3839	TRUE	181	1564	124	196	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	KIAA0196--MDM1	3	102	KIAA0196	1226	chr8:126103857:-	MDM1	45559	chr12:68696648:-	INCL_NON_REF_SPLICE	YES	257	53	0.29	0.66	0.0268	0.9107	KIAA0196->KIAA0196,chr8:126036502-126104082:-,MDM1->Mdm1_nuclear_protein,chr12:68666223-68726161:-	G292CLONEA141B1_BONE	0.29	0.66	0.9375	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	DAXX--KIFC3	8	80	DAXX	7625	chr6:33286466:-	KIFC3	31923	chr16:57800897:-	INCL_NON_REF_SPLICE	YES	0	192	1	0.31	0.0714	0.7142	DAXX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:33286335-33297046:-,death-domain_associated_protein,KIFC3->chr16:57792129-57896957:-,kinesin_family_member_C3	G292CLONEA141B1_BONE	0.31	1	0.7856	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	PPP2R1B--TVP23C	26	5	PPP2R1B	2623	chr11:111635529:-	TVP23C	34165	chr17:15419876:-	INCL_NON_REF_SPLICE	YES	60	59	0.34	0.34	0.2321	0.0446	PPP2R1B->chr11:111597632-111637151:-,protein_phosphatase_2_regulatory_subunit_A,_beta,TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae)	G292CLONEA141B1_BONE	0.34	0.34	0.2767	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	COX10--FER1L6	25	5	COX10	7304	chr17:14095538:+	FER1L6	18930	chr8:124985674:+	ONLY_REF_SPLICE	YES	36	1	0.45	0.97	0.2232	0.0446	COX10->COX10_heme_A:farnesyltransferase_cytochrome_c_oxidase_assembly_factor,chr17:13972813-14111994:+,FER1L6->chr8:124864227-125132302:+,fer-1_like_family_member_6	G292CLONEA141B1_BONE	0.45	0.97	0.2678	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	PRR16--CTD-2334D19.1	25	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	51	0	0.35	1	0.2232	0.0268	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	G292CLONEA141B1_BONE	0.35	1	0.25	FALSE	56	216	12	147	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	HEPH--GPR112	24	4	HEPH	20130	chrX:65428088:+	GPR112	51438	chrX:135443614:+	ONLY_REF_SPLICE	YES	4	0	0.88	1	0.2143	0.0357	HEPH->chrX:65382391-65488709:+,hephaestin,GPR112->chrX:135383122-135519215:+	G292CLONEA141B1_BONE	0.88	1	0.25	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MORF4L1--CTD-2147F2.1	20	15	MORF4L1	5537	chr15:79165560:+	CTD-2147F2.1	25179	chr15:97954422:+	ONLY_REF_SPLICE	YES	108	0	0.24	1	0.1786	0.1339	MORF4L1->chr15:79102829-79190475:+,mortality_factor_4_like_1,CTD-2147F2.1->chr15:97839111-97975324:+	G292CLONEA141B1_BONE	0.24	1	0.3125	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	NIPBL--SIMC1	19	6	NIPBL	41566	chr5:37049403:+	SIMC1	59601	chr5:175716657:+	ONLY_REF_SPLICE	YES	28	1	0.47	0.96	0.1696	0.0536	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,SIMC1->SUMO_interacting_motifs_containing_1,chr5:175665365-175772994:+	G292CLONEA141B1_BONE	0.47	0.96	0.2232	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	RPSAP52--HMGA2	19	4	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	26	1134	0.47	0.02	0.1696	0.0357	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	G292CLONEA141B1_BONE	0.02	0.47	0.2053	FALSE	0	59	0	125	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	RP11-680G10.1--GSE1	18	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	12	1	0.67	0.1607	0.0536	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	G292CLONEA141B1_BONE	0.67	1	0.2143	TRUE	465	1949	224	605	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	AP006621.5--TALDO1	19	1	AP006621.5	2850	chr11:783671:+	TALDO1	14899	chr11:764813:+	ONLY_REF_SPLICE	YES	2	60	0.91	0.25	0.1696	0.0089	LOCAL_REARRANGEMENT:+:[12554],AP006621.5->chr11:777578-784297:+,TALDO1->chr11:747329-765024:+,transaldolase_1	G292CLONEA141B1_BONE	0.25	0.91	0.1785	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MT-ND6--MT-TE	15	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.1339	0.1428	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G292CLONEA141B1_BONE	0.94	1	0.2767	FALSE	499	1288	110	792	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	CYHR1--FOXH1	17	5	CYHR1	10102	chr8:145678605:-	FOXH1	18055	chr8:145700406:-	INCL_NON_REF_SPLICE	YES	41	0	0.35	1	0.1518	0.0446	LOCAL_REARRANGEMENT:-:[7735],CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1,FOXH1->chr8:145698795-145701718:-,forkhead_box_H1	G292CLONEA141B1_BONE	0.35	1	0.1964	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	PRR16--CTD-2334D19.1	16	9	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	21	0	0.54	1	0.1428	0.0804	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	G292CLONEA141B1_BONE	0.54	1	0.2232	FALSE	21	45	1	60	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	SRGAP1--RP11-315E17.1	8	40	SRGAP1	6435	chr12:64410792:+	RP11-315E17.1	37616	chr12:81823779:+	INCL_NON_REF_SPLICE	YES	51	1	0.48	0.98	0.0714	0.3571	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,RP11-315E17.1->chr12:81771821-81866733:+	G292CLONEA141B1_BONE	0.48	0.98	0.4285	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	SRGAP1--RP11-315E17.1	6	40	SRGAP1	6435	chr12:64410792:+	RP11-315E17.1	37619	chr12:81823782:+	ONLY_REF_SPLICE	YES	51	1	0.47	0.98	0.0536	0.3571	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,RP11-315E17.1->chr12:81771821-81866733:+	G292CLONEA141B1_BONE	0.47	0.98	0.4107	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	AC003665.1--RP11-60A24.3	14	2	AC003665.1	2195	chr17:45995818:-	RP11-60A24.3	11606	chr17:55849557:-	ONLY_REF_SPLICE	YES	4	0	0.8	1	0.125	0.0179	AC003665.1->chr17:45974696-46018776:-,RP11-60A24.3->chr17:55849307-55912110:-	G292CLONEA141B1_BONE	0.8	1	0.1429	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	ZFPM2--RP11-152P17.2	14	2	ZFPM2	1290	chr8:106331209:+	RP11-152P17.2	30726	chr8:106810670:-	ONLY_REF_SPLICE	YES	6	1	0.73	0.94	0.125	0.0179	NEIGHBORS_OVERLAP:+:-:[24286],ZFPM2->chr8:106330920-106816760:+,zinc_finger_protein,_FOG_family_member_2,RP11-152P17.2->chr8:106792474-107072752:-	G292CLONEA141B1_BONE	0.73	0.94	0.1429	FALSE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	TMED3--HMG20A	14	0	TMED3	2605	chr15:79606347:+	HMG20A	15268	chr15:77750746:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.125	0	TMED3->chr15:79603404-79704334:+,transmembrane_p24_trafficking_protein_3,HMG20A->chr15:77712754-77777949:+,high_mobility_group_20A	G292CLONEA141B1_BONE	1	1	0.125	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MORF4L1--CTD-2147F2.1	13	3	MORF4L1	5376	chr15:79165399:+	CTD-2147F2.1	27301	chr15:97973000:+	ONLY_REF_SPLICE	YES	35	12	0.31	0.57	0.1161	0.0268	MORF4L1->chr15:79102829-79190475:+,mortality_factor_4_like_1,CTD-2147F2.1->chr15:97839111-97975324:+	G292CLONEA141B1_BONE	0.31	0.57	0.1429	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MT-ND6--MT-TE	12	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1071	0.0625	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G292CLONEA141B1_BONE	1	1	0.1696	FALSE	499	1288	110	792	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	RP11-123O10.4--GRIP1	13	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1161	0.0268	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	G292CLONEA141B1_BONE	1	1	0.1429	FALSE	416	2512	207	587	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	TRPS1--MPRIP	13	2	TRPS1	13825	chr8:116599228:-	MPRIP	40227	chr17:17045941:+	ONLY_REF_SPLICE	YES	40	755	0.27	0.02	0.1161	0.0179	TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein	G292CLONEA141B1_BONE	0.02	0.27	0.134	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	HM13--BCL2L1	12	5	HM13	14050	chr20:30149539:+	BCL2L1	23812	chr20:30310133:-	ONLY_REF_SPLICE	YES	800	335	0.02	0.05	0.1071	0.0446	{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[94885],HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	G292CLONEA141B1_BONE	0.02	0.05	0.1517	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	TBC1D30--COX10	11	6	TBC1D30	14437	chr12:65237265:+	COX10	32930	chr17:14063194:+	ONLY_REF_SPLICE	YES	1	80	0.94	0.18	0.0982	0.0536	TBC1D30->TBC1_domain_family_member_30,chr12:65174589-65274812:+,COX10->COX10_heme_A:farnesyltransferase_cytochrome_c_oxidase_assembly_factor,chr17:13972813-14111994:+	G292CLONEA141B1_BONE	0.18	0.94	0.1518	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	PPP2R1B--TVP23C	11	5	PPP2R1B	2623	chr11:111635529:-	TVP23C	34068	chr17:15419973:-	ONLY_REF_SPLICE	YES	60	63	0.21	0.2	0.0982	0.0446	PPP2R1B->chr11:111597632-111637151:-,protein_phosphatase_2_regulatory_subunit_A,_beta,TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae)	G292CLONEA141B1_BONE	0.2	0.21	0.1428	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	GRM5-AS1--TMEM5	11	3	GRM5-AS1	6965	chr11:88245516:+	TMEM5	18300	chr12:64195871:+	ONLY_REF_SPLICE	YES	0	468	1	0.03	0.0982	0.0268	GRM5-AS1->GRM5_antisense_RNA_1,chr11:88237744-88257222:+,TMEM5->chr12:64173583-64203338:+,transmembrane_protein_5	G292CLONEA141B1_BONE	0.03	1	0.125	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	TMEM135--PRSS23	10	7	TMEM135	5670	chr11:86868448:+	PRSS23	28261	chr11:86518673:+	ONLY_REF_SPLICE	YES	75	835	0.18	0.02	0.0893	0.0625	LOCAL_REARRANGEMENT:+:[84934],TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,PRSS23->chr11:86502101-86663952:+,protease,_serine_23	G292CLONEA141B1_BONE	0.02	0.18	0.1518	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	SGK223--SLC6A15	11	2	SGK223	5421	chr8:8233763:-	SLC6A15	16571	chr12:85286087:-	ONLY_REF_SPLICE	YES	80	128	0.14	0.09	0.0982	0.0179	SGK223->chr8:8175258-8244008:-,SLC6A15->chr12:85253492-85307394:-,solute_carrier_family_6_member_15	G292CLONEA141B1_BONE	0.09	0.14	0.1161	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MT-ND6--MT-TE	5	24	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0446	0.2143	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G292CLONEA141B1_BONE	0.94	1	0.2589	FALSE	499	1288	110	792	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	MT-ND6--MT-TE	5	24	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0446	0.2143	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G292CLONEA141B1_BONE	0.94	1	0.2589	FALSE	499	1288	110	792	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	EED--PPFIA1	9	6	EED	6238	chr11:85967554:+	PPFIA1	22754	chr11:70170508:+	ONLY_REF_SPLICE	YES	61	89	0.2	0.14	0.0804	0.0536	EED->chr11:85955586-85989855:+,embryonic_ectoderm_development,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	G292CLONEA141B1_BONE	0.14	0.2	0.134	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0893	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	G292CLONEA141B1_BONE	1	1	0.0893	TRUE	0	0	0	434	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	SRGAP1--RP11-315E17.1	1	36	SRGAP1	5372	chr12:64383852:+	RP11-315E17.1	36577	chr12:81811077:+	ONLY_REF_SPLICE	YES	52	0	0.42	1	0.0089	0.3214	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,RP11-315E17.1->chr12:81771821-81866733:+	G292CLONEA141B1_BONE	0.42	1	0.3303	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	TVP23C--KRT16P2	9	4	TVP23C	4551	chr17:15457079:-	KRT16P2	20558	chr17:16735663:-	ONLY_REF_SPLICE	YES	331	2	0.04	0.87	0.0804	0.0357	TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae),KRT16P2->chr17:16733313-16736147:-,keratin_16_pseudogene_2	G292CLONEA141B1_BONE	0.04	0.87	0.1161	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MSRA--SGK223	9	2	MSRA	10185	chr8:10177499:+	SGK223	25784	chr8:8197151:-	ONLY_REF_SPLICE	YES	247	92	0.04	0.11	0.0804	0.0179	MSRA->chr8:9911778-10286401:+,methionine_sulfoxide_reductase_A,SGK223->chr8:8175258-8244008:-	G292CLONEA141B1_BONE	0.04	0.11	0.0983	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	MT-ND6--MT-TE	5	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0.1518	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G292CLONEA141B1_BONE	1	1	0.1964	FALSE	499	1288	110	792	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	ISY1--SYNPR-AS1	9	0	ISY1	4278	chr3:128875476:-	SYNPR-AS1	17869	chr3:63535727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0804	0	ISY1->ISY1_splicing_factor_homolog,chr3:128846258-128880136:-,SYNPR-AS1->SYNPR_antisense_RNA_1,chr3:63409272-63535727:-	G292CLONEA141B1_BONE	1	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MT-ND6--MT-TE	8	4	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0714	0.0357	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G292CLONEA141B1_BONE	1	1	0.1071	FALSE	499	1288	110	792	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	SDK1--GLCCI1	9	0	SDK1	1437	chr7:3341516:+	GLCCI1	64190	chr7:8043538:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0804	0	SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1,GLCCI1->chr7:8008425-8133902:+,glucocorticoid_induced_1	G292CLONEA141B1_BONE	1	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	TMEM135--PRSS23	8	4	TMEM135	4604	chr11:86802437:+	PRSS23	28261	chr11:86518673:+	ONLY_REF_SPLICE	YES	64	835	0.16	0.01	0.0714	0.0357	LOCAL_REARRANGEMENT:+:[84934],TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,PRSS23->chr11:86502101-86663952:+,protease,_serine_23	G292CLONEA141B1_BONE	0.01	0.16	0.1071	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	DOCK1--GFM1	6	10	DOCK1	1144	chr10:128594121:+	GFM1	74087	chr3:158376711:+	INCL_NON_REF_SPLICE	YES	26	63	0.38	0.2	0.0536	0.0893	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,GFM1->G_elongation_factor,_mitochondrial_1,chr3:158362067-158410364:+	G292CLONEA141B1_BONE	0.2	0.38	0.1429	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	EED--PPFIA1	8	1	EED	1800	chr11:85956385:+	PPFIA1	22754	chr11:70170508:+	ONLY_REF_SPLICE	YES	66	89	0.12	0.09	0.0714	0.0089	EED->chr11:85955586-85989855:+,embryonic_ectoderm_development,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	G292CLONEA141B1_BONE	0.09	0.12	0.0803	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	HM13--BCL2L1	7	5	HM13	16224	chr20:30154098:+	BCL2L1	23812	chr20:30310133:-	ONLY_REF_SPLICE	YES	721	335	0.02	0.03	0.0625	0.0446	{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[94885],HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	G292CLONEA141B1_BONE	0.02	0.03	0.1071	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	MED13L--TMEM132B	2	24	MED13L	4232	chr12:116549233:-	TMEM132B	47554	chr12:125900077:+	ONLY_REF_SPLICE	YES	47	0	0.36	1	0.0179	0.2143	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,TMEM132B->chr12:125671382-126146917:+,transmembrane_protein_132B	G292CLONEA141B1_BONE	0.36	1	0.2322	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	NPC1--ANKRD29	8	0	NPC1	6485	chr18:21148787:-	ANKRD29	37348	chr18:21229157:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0714	0	LOCAL_REARRANGEMENT:-:[12028],NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-,ANKRD29->ankyrin_repeat_domain_29,chr18:21178890-21242849:-	G292CLONEA141B1_BONE	1	1	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	RP1-34H18.1--NAV3	8	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0714	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	G292CLONEA141B1_BONE	1	1	0.0714	TRUE	254	575	65	124	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	DAXX--KIFC3	2	22	DAXX	7317	chr6:33286774:-	KIFC3	33240	chr16:57799552:-	ONLY_REF_SPLICE	YES	0	127	1	0.16	0.0179	0.1964	DAXX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:33286335-33297046:-,death-domain_associated_protein,KIFC3->chr16:57792129-57896957:-,kinesin_family_member_C3	G292CLONEA141B1_BONE	0.16	1	0.2143	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	ST3GAL5--EXOC6B	7	2	ST3GAL5	1191	chr2:86115947:-	EXOC6B	37672	chr2:72719558:-	ONLY_REF_SPLICE	YES	41	8	0.18	0.53	0.0625	0.0179	ST3GAL5->ST3_beta-galactoside_alpha-2,3-sialyltransferase_5,chr2:86066267-86116137:-,EXOC6B->chr2:72403113-73053170:-,exocyst_complex_component_6B	G292CLONEA141B1_BONE	0.18	0.53	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MT-ND6--MT-TE	7	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G292CLONEA141B1_BONE	1	1	0.0625	FALSE	499	1288	110	792	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	MYH10--AC002539.1	6	4	MYH10	2704	chr17:8526220:-	AC002539.1	52276	chr17:68018338:-	ONLY_REF_SPLICE	YES	242	0	0.04	1	0.0536	0.0357	MYH10->chr17:8377523-8534079:-,myosin,_heavy_chain_10,_non-muscle,AC002539.1->chr17:68013465-68125000:-	G292CLONEA141B1_BONE	0.04	1	0.0893	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	REV3L--RPL28	7	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	G292CLONEA141B1_BONE	1	1	0.0625	TRUE	22	156	2	142	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	TRPS1--MPRIP	7	0	TRPS1	13825	chr8:116599228:-	MPRIP	42270	chr17:17049350:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0625	0	TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein	G292CLONEA141B1_BONE	1	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MYH10--AC002539.1	6	2	MYH10	2704	chr17:8526220:-	AC002539.1	55595	chr17:68013533:-	ONLY_REF_SPLICE	YES	242	1	0.03	0.89	0.0536	0.0179	MYH10->chr17:8377523-8534079:-,myosin,_heavy_chain_10,_non-muscle,AC002539.1->chr17:68013465-68125000:-	G292CLONEA141B1_BONE	0.03	0.89	0.0715	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	TVP23C--KRT16P2	5	6	TVP23C	4631	chr17:15456999:-	KRT16P2	20558	chr17:16735663:-	ONLY_REF_SPLICE	YES	265	2	0.04	0.85	0.0446	0.0536	TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae),KRT16P2->chr17:16733313-16736147:-,keratin_16_pseudogene_2	G292CLONEA141B1_BONE	0.04	0.85	0.0982	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MORF4L1--CTD-2147F2.1	5	4	MORF4L1	5376	chr15:79165399:+	CTD-2147F2.1	26266	chr15:97959020:+	ONLY_REF_SPLICE	YES	35	7	0.2	0.56	0.0446	0.0357	MORF4L1->chr15:79102829-79190475:+,mortality_factor_4_like_1,CTD-2147F2.1->chr15:97839111-97975324:+	G292CLONEA141B1_BONE	0.2	0.56	0.0803	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	EED--PPFIA1	4	6	EED	7320	chr11:85968638:+	PPFIA1	22754	chr11:70170508:+	ONLY_REF_SPLICE	YES	60	89	0.14	0.1	0.0357	0.0536	EED->chr11:85955586-85989855:+,embryonic_ectoderm_development,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	G292CLONEA141B1_BONE	0.1	0.14	0.0893	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	RP11-353N4.6--SEC22B	5	2	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	57	221	0.11	0.03	0.0446	0.0179	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	G292CLONEA141B1_BONE	0.03	0.11	0.0625	TRUE	49	42	7	43	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	COX10--FER1L6	5	1	COX10	7304	chr17:14095538:+	FER1L6	21944	chr8:124989657:+	ONLY_REF_SPLICE	YES	36	7	0.14	0.46	0.0446	0.0089	COX10->COX10_heme_A:farnesyltransferase_cytochrome_c_oxidase_assembly_factor,chr17:13972813-14111994:+,FER1L6->chr8:124864227-125132302:+,fer-1_like_family_member_6	G292CLONEA141B1_BONE	0.14	0.46	0.0535	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	IMMP2L--DOCK4	5	1	IMMP2L	4976	chr7:111127294:-	DOCK4	44957	chr7:111484953:-	ONLY_REF_SPLICE	YES	11	13	0.35	0.32	0.0446	0.0089	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	G292CLONEA141B1_BONE	0.32	0.35	0.0535	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MDM1--TMEM212	5	1	MDM1	8800	chr12:68715127:-	TMEM212	24789	chr3:171569772:+	ONLY_REF_SPLICE	YES	55	0	0.1	1	0.0446	0.0089	MDM1->Mdm1_nuclear_protein,chr12:68666223-68726161:-,TMEM212->chr3:171561139-171656505:+,transmembrane_protein_212	G292CLONEA141B1_BONE	0.1	1	0.0535	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	CDK4--HMGB1	5	0	CDK4	3019	chr12:58145368:-	HMGB1	16906	chr13:31035550:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	CDK4->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:58141510-58149796:-,cyclin-dependent_kinase_4,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	G292CLONEA141B1_BONE	1	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	IMMP2L--DOCK4	5	0	IMMP2L	4976	chr7:111127294:-	DOCK4	47200	chr7:111474742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	G292CLONEA141B1_BONE	1	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	COL1A1--NPM1	4	3	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	1620	5	0	0.58	0.0357	0.0268	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	G292CLONEA141B1_BONE	0	0.58	0.0625	FALSE	0	0	0	31	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	COL22A1--CHST12	2	11	COL22A1	41383	chr8:139696668:-	CHST12	75861	chr7:2472198:+	ONLY_REF_SPLICE	YES	93	10	0.12	0.57	0.0179	0.0982	COL22A1->chr8:139600478-139926249:-,collagen_type_XXII_alpha_1,CHST12->carbohydrate_(chondroitin_4)_sulfotransferase_12,chr7:2443223-2474242:+	G292CLONEA141B1_BONE	0.12	0.57	0.1161	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MORF4L1--CTD-2147F2.1	1	15	MORF4L1	5437	chr15:79165460:+	CTD-2147F2.1	25179	chr15:97954422:+	ONLY_REF_SPLICE	YES	96	0	0.14	1	0.0089	0.1339	MORF4L1->chr15:79102829-79190475:+,mortality_factor_4_like_1,CTD-2147F2.1->chr15:97839111-97975324:+	G292CLONEA141B1_BONE	0.14	1	0.1428	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	NIPBL--SIMC1	3	6	NIPBL	41566	chr5:37049403:+	SIMC1	58471	chr5:175697394:+	ONLY_REF_SPLICE	YES	28	0	0.24	1	0.0268	0.0536	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,SIMC1->SUMO_interacting_motifs_containing_1,chr5:175665365-175772994:+	G292CLONEA141B1_BONE	0.24	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	FAM19A2--AVIL	4	1	FAM19A2	6794	chr12:62652544:-	AVIL	47559	chr12:58197174:-	ONLY_REF_SPLICE	YES	4	7	0.56	0.42	0.0357	0.0089	FAM19A2->chr12:62102040-62672931:-,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A2,AVIL->advillin,chr12:58191159-58212487:-	G292CLONEA141B1_BONE	0.42	0.56	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MARK3--EIF5	4	1	MARK3	3189	chr14:103871604:+	EIF5	41481	chr14:103810237:+	INCL_NON_REF_SPLICE	YES	70	14	0.07	0.26	0.0357	0.0089	GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},LOCAL_REARRANGEMENT:+:[40367],MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3,EIF5->chr14:103799881-103811362:+,eukaryotic_translation_initiation_factor_5	G292CLONEA141B1_BONE	0.07	0.26	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	PPP2R1B--TVP23C	3	5	PPP2R1B	2623	chr11:111635529:-	TVP23C	34168	chr17:15419873:-	INCL_NON_REF_SPLICE	YES	60	58	0.12	0.12	0.0268	0.0446	PPP2R1B->chr11:111597632-111637151:-,protein_phosphatase_2_regulatory_subunit_A,_beta,TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae)	G292CLONEA141B1_BONE	0.12	0.12	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	RP1-34H18.1--RP11-781A6.1	4	1	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0.0089	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	G292CLONEA141B1_BONE	1	1	0.0446	TRUE	94	160	11	37	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	RP11-315E17.1--DPY19L2	4	1	RP11-315E17.1	2243	chr12:81811118:+	DPY19L2	18746	chr12:64020306:-	ONLY_REF_SPLICE	YES	1	2	0.83	0.71	0.0357	0.0089	RP11-315E17.1->chr12:81771821-81866733:+,DPY19L2->chr12:63952693-64062719:-,dpy-19_like_2	G292CLONEA141B1_BONE	0.71	0.83	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	GNS--ZFC3H1	2	8	GNS	8538	chr12:65136921:-	ZFC3H1	27226	chr12:72054207:-	ONLY_REF_SPLICE	YES	1048	24	0.01	0.29	0.0179	0.0714	GNS->chr12:65107225-65153227:-,glucosamine_(N-acetyl)-6-sulfatase,ZFC3H1->chr12:72003252-72061505:-,zinc_finger_C3H1-type_containing	G292CLONEA141B1_BONE	0.01	0.29	0.0893	FALSE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	ISY1--COPG1	4	0	ISY1	4278	chr3:128875476:-	COPG1	30116	chr3:128985867:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	LOCAL_INVERSION:-:+:[88313],ISY1->ISY1_splicing_factor_homolog,chr3:128846258-128880136:-,COPG1->chr3:128968449-128996614:+,coatomer_protein_complex_subunit_gamma_1	G292CLONEA141B1_BONE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	RP11-123O10.4--TMBIM4	4	0	RP11-123O10.4	1113	chr12:67462830:-	TMBIM4	9528	chr12:66547228:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	RP11-123O10.4->chr12:67285656-67462942:-,TMBIM4->chr12:66517697-66563765:-,chr12:66517709-66563852:-,transmembrane_BAX_inhibitor_motif_containing_4	G292CLONEA141B1_BONE	1	1	0.0357	TRUE	1	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	RP11-444D3.1--SOX5	4	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	G292CLONEA141B1_BONE	1	1	0.0357	TRUE	477	1352	189	275	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	TMEM135--PRSS23	3	4	TMEM135	3570	chr11:86782657:+	PRSS23	28261	chr11:86518673:+	ONLY_REF_SPLICE	YES	61	835	0.1	0.01	0.0268	0.0357	LOCAL_REARRANGEMENT:+:[84934],TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,PRSS23->chr11:86502101-86663952:+,protease,_serine_23	G292CLONEA141B1_BONE	0.01	0.1	0.0625	FALSE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	KIAA0196--MDM1	2	7	KIAA0196	1226	chr8:126103857:-	MDM1	46808	chr12:68690762:-	ONLY_REF_SPLICE	YES	257	135	0.03	0.06	0.0179	0.0625	KIAA0196->KIAA0196,chr8:126036502-126104082:-,MDM1->Mdm1_nuclear_protein,chr12:68666223-68726161:-	G292CLONEA141B1_BONE	0.03	0.06	0.0804	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	LLGL1--LRRIQ1	3	2	LLGL1	7720	chr17:18140253:+	LRRIQ1	18698	chr12:85431928:+	ONLY_REF_SPLICE	YES	202	0	0.02	1	0.0268	0.0179	LLGL1->LLGL1,_scribble_cell_polarity_complex_component,chr17:18128901-18148189:+,LRRIQ1->chr12:85430092-85657002:+,leucine-rich_repeats_and_IQ_motif_containing_1	G292CLONEA141B1_BONE	0.02	1	0.0447	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	LLGL1--LRRIQ1	3	2	LLGL1	7720	chr17:18140253:+	LRRIQ1	18721	chr12:85431951:+	ONLY_REF_SPLICE	YES	202	0	0.02	1	0.0268	0.0179	LLGL1->LLGL1,_scribble_cell_polarity_complex_component,chr17:18128901-18148189:+,LRRIQ1->chr12:85430092-85657002:+,leucine-rich_repeats_and_IQ_motif_containing_1	G292CLONEA141B1_BONE	0.02	1	0.0447	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	FAM49B--MSRB3	1	9	FAM49B	8896	chr8:130915558:-	MSRB3	45823	chr12:65881784:+	ONLY_REF_SPLICE	YES	276	1	0.03	0.91	0.0089	0.0804	FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3	G292CLONEA141B1_BONE	0.03	0.91	0.0893	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	KIF3B--NXPE2	2	5	KIF3B	5228	chr20:30904677:+	NXPE2	18313	chr11:114568767:+	ONLY_REF_SPLICE	YES	37	2	0.16	0.78	0.0179	0.0446	KIF3B->chr20:30865467-30922814:+,kinesin_family_member_3B,NXPE2->chr11:114549108-114579362:+,neurexophilin_and_PC-esterase_domain_family_member_2	G292CLONEA141B1_BONE	0.16	0.78	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	RP11-123O10.4--TBC1D28	3	1	RP11-123O10.4	1113	chr12:67462830:-	TBC1D28	8330	chr17:18545311:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0.0089	RP11-123O10.4->chr12:67285656-67462942:-,TBC1D28->TBC1_domain_family_member_28,chr17:18538319-18565263:-	G292CLONEA141B1_BONE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	RP11-123O10.4--TBC1D28	3	1	RP11-123O10.4	1113	chr12:67462830:-	TBC1D28	8359	chr17:18545282:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0.0089	RP11-123O10.4->chr12:67285656-67462942:-,TBC1D28->TBC1_domain_family_member_28,chr17:18538319-18565263:-	G292CLONEA141B1_BONE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	RPSAP52--IRAK3	3	1	RPSAP52	1132	chr12:66220623:-	IRAK3	10040	chr12:66597491:+	ONLY_REF_SPLICE	YES	26	18	0.13	0.18	0.0268	0.0089	RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,IRAK3->chr12:66582659-66648402:+,interleukin_1_receptor_associated_kinase_3	G292CLONEA141B1_BONE	0.13	0.18	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	ZNF286A--CHMP1A	3	1	ZNF286A	5099	chr17:15611561:+	CHMP1A	30838	chr16:89713739:-	ONLY_REF_SPLICE	YES	182	155	0.02	0.03	0.0268	0.0089	ZNF286A->chr17:15602891-15640874:+,chr17:15603006-15648092:+,zinc_finger_protein_286A,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	G292CLONEA141B1_BONE	0.02	0.03	0.0357	TRUE	0	2	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	CAPZA2--RPL30	3	0	CAPZA2	3371	chr7:116502704:+	RPL30	26457	chr8:99057627:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	G292CLONEA141B1_BONE	1	1	0.0268	TRUE	0	1	0	1	1	TRUE	ACH-000082
G292CLONEA141B1_BONE	CCND1--CDK4	3	0	CCND1	2455	chr11:69457828:+	CDK4	14253	chr12:58145358:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	chimerdb_pubmed{etiology of cancer},CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,CDK4->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr12:58141510-58149796:-,cyclin-dependent_kinase_4	G292CLONEA141B1_BONE	1	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	COL5A1--ECE1	1	8	COL5A1	7112	chr9:137593179:+	ECE1	76370	chr1:21605825:-	ONLY_REF_SPLICE	NO	108	172	0.08	0.05	0.0089	0.0714	COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1,ECE1->chr1:21543740-21671997:-,endothelin_converting_enzyme_1	G292CLONEA141B1_BONE	0.05	0.08	0.0803	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	FDFT1--CTSB	1	8	FDFT1	11742	chr8:11689179:+	CTSB	31538	chr8:11705661:-	ONLY_REF_SPLICE	YES	629	3039	0.01	0	0.0089	0.0714	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[3215],FDFT1->chr8:11653082-11696818:+,farnesyl-diphosphate_farnesyltransferase_1,CTSB->Oncogene{Bushman},cathepsin_B,chr8:11700033-11726957:-	G292CLONEA141B1_BONE	0	0.01	0.0803	FALSE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	ISY1--SYNPR-AS1	3	0	ISY1	4278	chr3:128875476:-	SYNPR-AS1	17852	chr3:63535744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	ISY1->ISY1_splicing_factor_homolog,chr3:128846258-128880136:-,SYNPR-AS1->SYNPR_antisense_RNA_1,chr3:63409272-63535727:-	G292CLONEA141B1_BONE	1	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	JSRP1--RPS28	3	0	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	G292CLONEA141B1_BONE	1	1	0.0268	TRUE	0	1	0	84	1	FALSE	ACH-000082
G292CLONEA141B1_BONE	LINC01036--LINC01037	3	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	G292CLONEA141B1_BONE	1	1	0.0268	FALSE	0	26	0	50	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G292CLONEA141B1_BONE	1	1	0.0268	FALSE	499	1288	110	792	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	MYH10--AC002539.1	2	4	MYH10	2704	chr17:8526220:-	AC002539.1	51094	chr17:68049621:-	ONLY_REF_SPLICE	YES	242	0	0.02	1	0.0179	0.0357	MYH10->chr17:8377523-8534079:-,myosin,_heavy_chain_10,_non-muscle,AC002539.1->chr17:68013465-68125000:-	G292CLONEA141B1_BONE	0.02	1	0.0536	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	NPM1P24--SET	3	0	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	G292CLONEA141B1_BONE	1	1	0.0268	TRUE	0	0	0	434	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	NLGN1--SDK1	2	3	NLGN1	15992	chr3:173993290:+	SDK1	51925	chr7:4116630:+	ONLY_REF_SPLICE	YES	18	1	0.22	0.83	0.0179	0.0268	NLGN1->chr3:173114074-174004434:+,neuroligin_1,SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1	G292CLONEA141B1_BONE	0.22	0.83	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	NLGN1--SDK1	2	3	NLGN1	16019	chr3:173993317:+	SDK1	51925	chr7:4116630:+	ONLY_REF_SPLICE	YES	17	1	0.23	0.83	0.0179	0.0268	NLGN1->chr3:173114074-174004434:+,neuroligin_1,SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1	G292CLONEA141B1_BONE	0.23	0.83	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	TVP23C--KRT16P2	2	3	TVP23C	3486	chr17:15458596:-	KRT16P2	20558	chr17:16735663:-	ONLY_REF_SPLICE	YES	142	2	0.03	0.71	0.0179	0.0268	TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae),KRT16P2->chr17:16733313-16736147:-,keratin_16_pseudogene_2	G292CLONEA141B1_BONE	0.03	0.71	0.0447	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	MYH10--AC002539.1	2	2	MYH10	2704	chr17:8526220:-	AC002539.1	53395	chr17:68015733:-	ONLY_REF_SPLICE	YES	242	1	0.02	0.8	0.0179	0.0179	MYH10->chr17:8377523-8534079:-,myosin,_heavy_chain_10,_non-muscle,AC002539.1->chr17:68013465-68125000:-	G292CLONEA141B1_BONE	0.02	0.8	0.0358	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	NIPBL--SIMC1	1	6	NIPBL	41566	chr5:37049403:+	SIMC1	57224	chr5:175690420:+	ONLY_REF_SPLICE	NO	28	0	0.2	1	0.0089	0.0536	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,SIMC1->SUMO_interacting_motifs_containing_1,chr5:175665365-175772994:+	G292CLONEA141B1_BONE	0.2	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	DOCK1--GFM1	1	5	DOCK1	1155	chr10:128594132:+	GFM1	75846	chr3:158378663:+	ONLY_REF_SPLICE	YES	40	71	0.13	0.08	0.0089	0.0446	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,GFM1->G_elongation_factor,_mitochondrial_1,chr3:158362067-158410364:+	G292CLONEA141B1_BONE	0.08	0.13	0.0535	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	COX10--FER1L6	2	0	COX10	6071	chr17:14063264:+	FER1L6	21944	chr8:124989657:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	COX10->COX10_heme_A:farnesyltransferase_cytochrome_c_oxidase_assembly_factor,chr17:13972813-14111994:+,FER1L6->chr8:124864227-125132302:+,fer-1_like_family_member_6	G292CLONEA141B1_BONE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	CPSF6--CHMP1A	2	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	G292CLONEA141B1_BONE	1	1	0.0179	TRUE	95	74	6	34	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	LINC01036--LINC01037	2	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	G292CLONEA141B1_BONE	1	1	0.0179	FALSE	0	24	0	62	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	MDM1--LIMD1-AS1	2	0	MDM1	13148	chr12:68707223:-	LIMD1-AS1	25354	chr3:45721563:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	MDM1->Mdm1_nuclear_protein,chr12:68666223-68726161:-,LIMD1-AS1->LIMD1_antisense_RNA_1,chr3:45720535-45730626:-	G292CLONEA141B1_BONE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	MDM1--TMEM212	2	0	MDM1	8622	chr12:68715305:-	TMEM212	24789	chr3:171569772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	MDM1->Mdm1_nuclear_protein,chr12:68666223-68726161:-,TMEM212->chr3:171561139-171656505:+,transmembrane_protein_212	G292CLONEA141B1_BONE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	PITPNB--RBX1	2	0	PITPNB	8332	chr22:28290543:-	RBX1	24666	chr22:41363803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	PITPNB->chr22:28247657-28316122:-,phosphatidylinositol_transfer_protein_beta,RBX1->Oncogene{Bushman},chr22:41347351-41369313:+,ring-box_1	G292CLONEA141B1_BONE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	G292CLONEA141B1_BONE	1	1	0.0179	TRUE	5	8	0	33	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	TMEM135--PRSS23	2	0	TMEM135	5670	chr11:86868448:+	PRSS23	32907	chr11:86534419:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	LOCAL_REARRANGEMENT:+:[84934],TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,PRSS23->chr11:86502101-86663952:+,protease,_serine_23	G292CLONEA141B1_BONE	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	PRR16--CTD-2334D19.1	1	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	51	0	0.07	1	0.0089	0.0268	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	G292CLONEA141B1_BONE	0.07	1	0.0357	FALSE	1	13	0	24	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	SPATS2--PRPH	1	3	SPATS2	3067	chr12:49765073:+	PRPH	31354	chr12:49687507:+	ONLY_REF_SPLICE	YES	60	1	0.06	0.8	0.0089	0.0268	LOCAL_REARRANGEMENT:+:[67902],SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2,PRPH->chr12:49687035-49692465:+,peripherin	G292CLONEA141B1_BONE	0.06	0.8	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	LLGL1--LRRIQ1	1	2	LLGL1	7720	chr17:18140253:+	LRRIQ1	18701	chr12:85431931:+	ONLY_REF_SPLICE	YES	202	0	0.01	1	0.0089	0.0179	LLGL1->LLGL1,_scribble_cell_polarity_complex_component,chr17:18128901-18148189:+,LRRIQ1->chr12:85430092-85657002:+,leucine-rich_repeats_and_IQ_motif_containing_1	G292CLONEA141B1_BONE	0.01	1	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	RP11-353N4.6--SEC22B	1	2	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	66	221	0.04	0.01	0.0089	0.0179	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	G292CLONEA141B1_BONE	0.01	0.04	0.0268	FALSE	49	42	7	43	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	SPATS2--PRPH	1	2	SPATS2	2004	chr12:49761370:+	PRPH	31354	chr12:49687507:+	ONLY_REF_SPLICE	NO	43	1	0.07	0.75	0.0089	0.0179	LOCAL_REARRANGEMENT:+:[67902],SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2,PRPH->chr12:49687035-49692465:+,peripherin	G292CLONEA141B1_BONE	0.07	0.75	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	ST3GAL5--EXOC6B	1	2	ST3GAL5	3795	chr2:86097195:-	EXOC6B	37672	chr2:72719558:-	ONLY_REF_SPLICE	YES	47	8	0.06	0.27	0.0089	0.0179	ST3GAL5->ST3_beta-galactoside_alpha-2,3-sialyltransferase_5,chr2:86066267-86116137:-,EXOC6B->chr2:72403113-73053170:-,exocyst_complex_component_6B	G292CLONEA141B1_BONE	0.06	0.27	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000082
G292CLONEA141B1_BONE	ANPEP--AP3S2	1	1	ANPEP	1129	chr15:90358505:-	AP3S2	31622	chr15:90380954:-	ONLY_REF_SPLICE	YES	0	74	1	0.03	0.0089	0.0089	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[15198],ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,AP3S2->adaptor_related_protein_complex_3_sigma_2_subunit,chr15:90373831-90437574:-	G292CLONEA141B1_BONE	0.03	1	0.0178	TRUE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	MSRA--SGK223	1	1	MSRA	6478	chr8:10102733:+	SGK223	25784	chr8:8197151:-	ONLY_REF_SPLICE	NO	261	92	0.01	0.02	0.0089	0.0089	MSRA->chr8:9911778-10286401:+,methionine_sulfoxide_reductase_A,SGK223->chr8:8175258-8244008:-	G292CLONEA141B1_BONE	0.01	0.02	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000082
G292CLONEA141B1_BONE	YWHAE--RPA1	1	1	YWHAE	1332	chr17:1303341:-	RPA1	20952	chr17:1775728:+	ONLY_REF_SPLICE	YES	760	152	0	0.01	0.0089	0.0089	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,RPA1->chr17:1732996-1803376:+,replication_protein_A1	G292CLONEA141B1_BONE	0	0.01	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000082
NCIH1694_LUNG	MACF1--SDCCAG8	1074	498	MACF1	68303	chr1:39838268:+	SDCCAG8	139424	chr1:243493842:+	ONLY_REF_SPLICE	YES	72	42	0.96	0.97	12.1926	5.6536	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	NCIH1694_LUNG	0.96	0.97	17.8462	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	SDCCAG8--MACF1	721	399	SDCCAG8	19917	chr1:243542165:+	MACF1	100429	chr1:39844133:+	ONLY_REF_SPLICE	YES	162	80	0.87	0.93	8.1852	4.5297	SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	NCIH1694_LUNG	0.87	0.93	12.7149	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	COPA--DEDD	739	289	COPA	22940	chr1:160264274:-	DEDD	32973	chr1:161100637:-	ONLY_REF_SPLICE	YES	285	36	0.78	0.97	8.3895	3.2809	COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha,DEDD->chr1:161090764-161102478:-,death_effector_domain_containing	NCIH1694_LUNG	0.78	0.97	11.6704	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	DEDD--MACF1	602	366	DEDD	4562	chr1:161093629:-	MACF1	44035	chr1:39775242:+	ONLY_REF_SPLICE	YES	171	109	0.85	0.9	6.8342	4.155	DEDD->chr1:161090764-161102478:-,death_effector_domain_containing,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	NCIH1694_LUNG	0.85	0.9	10.9892	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	HPRT1--ZNF75D	272	226	HPRT1	3674	chrX:133609394:+	ZNF75D	26776	chrX:134385959:-	ONLY_REF_SPLICE	YES	294	0	0.63	1	3.0879	2.5657	HPRT1->chrX:133594183-133654543:+,hypoxanthine_phosphoribosyltransferase_1,ZNF75D->chrX:134382867-134478012:-,zinc_finger_protein_75D	NCIH1694_LUNG	0.63	1	5.6536	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	KANSL1--ARL17B	206	91	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	77	86	0.79	0.78	2.3386	1.0331	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH1694_LUNG	0.78	0.79	3.3717	TRUE	181	1564	124	196	0	FALSE	ACH-000431
NCIH1694_LUNG	OR51S1--TP53I11	147	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6688	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH1694_LUNG	1	1	1.6688	TRUE	402	216	10	229	0	FALSE	ACH-000431
NCIH1694_LUNG	COPA--DEDD	50	284	COPA	22940	chr1:160264274:-	DEDD	32977	chr1:161100633:-	ONLY_REF_SPLICE	YES	285	33	0.54	0.91	0.5676	3.2241	COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha,DEDD->chr1:161090764-161102478:-,death_effector_domain_containing	NCIH1694_LUNG	0.54	0.91	3.7917	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	AKT3--MYCL	105	43	AKT3	25845	chr1:243708812:-	MYCL	40452	chr1:40363642:-	ONLY_REF_SPLICE	YES	2040	4679	0.07	0.03	1.192	0.4882	AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH1694_LUNG	0.03	0.07	1.6802	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	FAM49B--ASAP1	92	61	FAM49B	14700	chr8:130883621:-	ASAP1	54362	chr8:131149284:-	ONLY_REF_SPLICE	YES	380	119	0.29	0.56	1.0444	0.6925	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[34978],FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-	NCIH1694_LUNG	0.29	0.56	1.7369	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	TIMM23B--LINC00843	91	48	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.0331	0.5449	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1694_LUNG	0.99	1	1.578	TRUE	508	994	45	981	0	FALSE	ACH-000431
NCIH1694_LUNG	SDCCAG8--MACF1	46	209	SDCCAG8	19917	chr1:243542165:+	MACF1	101171	chr1:39844875:+	ONLY_REF_SPLICE	YES	162	76	0.61	0.77	0.5222	2.3727	SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	NCIH1694_LUNG	0.61	0.77	2.8949	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	DEDD--MACF1	3	366	DEDD	4562	chr1:161093629:-	MACF1	44013	chr1:39775220:+	INCL_NON_REF_SPLICE	YES	171	117	0.68	0.76	0.0341	4.155	DEDD->chr1:161090764-161102478:-,death_effector_domain_containing,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	NCIH1694_LUNG	0.68	0.76	4.1891	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	UBFD1--SCNN1B	73	56	UBFD1	5864	chr16:23574051:+	SCNN1B	23306	chr16:23359913:+	ONLY_REF_SPLICE	YES	137	101	0.48	0.56	0.8287	0.6357	UBFD1->chr16:23568392-23585710:+,ubiquitin_family_domain_containing_1,SCNN1B->Oncogene{Bushman},chr16:23289552-23392620:+,sodium_channel_epithelial_1_beta_subunit	NCIH1694_LUNG	0.48	0.56	1.4644	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	HPRT1--ZNF75D	30	204	HPRT1	3674	chrX:133609394:+	ZNF75D	26782	chrX:134385953:-	INCL_NON_REF_SPLICE	YES	294	0	0.44	1	0.3406	2.3159	HPRT1->chrX:133594183-133654543:+,hypoxanthine_phosphoribosyltransferase_1,ZNF75D->chrX:134382867-134478012:-,zinc_finger_protein_75D	NCIH1694_LUNG	0.44	1	2.6565	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	COPA--DEDD	8	268	COPA	22936	chr1:160264278:-	DEDD	32950	chr1:161100660:-	INCL_NON_REF_SPLICE	YES	282	36	0.49	0.88	0.0908	3.0425	COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha,DEDD->chr1:161090764-161102478:-,death_effector_domain_containing	NCIH1694_LUNG	0.49	0.88	3.1333	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	COPA--DEDD	3	268	COPA	22936	chr1:160264278:-	DEDD	32947	chr1:161100663:-	INCL_NON_REF_SPLICE	YES	282	36	0.49	0.88	0.0341	3.0425	COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha,DEDD->chr1:161090764-161102478:-,death_effector_domain_containing	NCIH1694_LUNG	0.49	0.88	3.0766	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	DEDD--MACF1	36	129	DEDD	4562	chr1:161093629:-	MACF1	44710	chr1:39775917:+	ONLY_REF_SPLICE	YES	171	194	0.49	0.46	0.4087	1.4645	DEDD->chr1:161090764-161102478:-,death_effector_domain_containing,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	NCIH1694_LUNG	0.46	0.49	1.8732	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	NIPBL--RHOXF2B	61	23	NIPBL	10481	chr5:36976040:+	RHOXF2B	57255	chrX:119206810:-	INCL_NON_REF_SPLICE	YES	55	0	0.6	1	0.6925	0.2611	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,RHOXF2B->Rhox_homeobox_family_member_2B,chrX:119205848-119211707:-	NCIH1694_LUNG	0.6	1	0.9536	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	RP11-278H7.1--VANGL2	49	42	RP11-278H7.1	1125	chr1:244080828:+	VANGL2	17688	chr1:160385438:+	ONLY_REF_SPLICE	YES	0	80	1	0.53	0.5563	0.4768	RP11-278H7.1->chr1:244080704-244210619:+,VANGL2->VANGL_planar_cell_polarity_protein_2,chr1:160370376-160398468:+	NCIH1694_LUNG	0.53	1	1.0331	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	MACF1--SDCCAG8	10	196	MACF1	67185	chr1:39835858:+	SDCCAG8	139424	chr1:243493842:+	ONLY_REF_SPLICE	YES	211	42	0.49	0.83	0.1135	2.2251	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	NCIH1694_LUNG	0.49	0.83	2.3386	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	COPA--DEDD	2	227	COPA	22940	chr1:160264274:-	DEDD	34006	chr1:161094316:-	ONLY_REF_SPLICE	YES	285	53	0.45	0.81	0.0227	2.577	COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha,DEDD->chr1:161090764-161102478:-,death_effector_domain_containing	NCIH1694_LUNG	0.45	0.81	2.5997	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	AKT3--MYCL	37	78	AKT3	25845	chr1:243708812:-	MYCL	37620	chr1:40367115:-	ONLY_REF_SPLICE	YES	2040	1847	0.05	0.06	0.42	0.8855	AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH1694_LUNG	0.05	0.06	1.3055	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	TIMM23--RP11-464F9.1	52	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	285	7	0.17	0.89	0.5903	0.0568	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1694_LUNG	0.17	0.89	0.6471	TRUE	519	3926	326	965	0	FALSE	ACH-000431
NCIH1694_LUNG	RP11-680G10.1--GSE1	47	23	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	27	1	0.72	0.5336	0.2611	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1694_LUNG	0.72	1	0.7947	TRUE	458	1351	185	561	0	FALSE	ACH-000431
NCIH1694_LUNG	PABPN1--CHD8	38	38	PABPN1	2778	chr14:23792275:+	CHD8	15613	chr14:21896413:-	ONLY_REF_SPLICE	YES	1128	135	0.06	0.36	0.4314	0.4314	PABPN1->chr14:23790498-23795394:+,poly(A)_binding_protein_nuclear_1,CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8	NCIH1694_LUNG	0.06	0.36	0.8628	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	ZNF654--HMGB2	37	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.42	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1694_LUNG	1	1	0.42	TRUE	0	0	0	518	0	FALSE	ACH-000431
NCIH1694_LUNG	MT-TA--MT-TC	36	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4087	0.0227	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1694_LUNG	1	1	0.4314	FALSE	462	80	0	856	0	FALSE	ACH-000431
NCIH1694_LUNG	UBFD1--SCNN1B	21	58	UBFD1	6915	chr16:23575410:+	SCNN1B	23306	chr16:23359913:+	INCL_NON_REF_SPLICE	YES	144	101	0.35	0.44	0.2384	0.6584	UBFD1->chr16:23568392-23585710:+,ubiquitin_family_domain_containing_1,SCNN1B->Oncogene{Bushman},chr16:23289552-23392620:+,sodium_channel_epithelial_1_beta_subunit	NCIH1694_LUNG	0.35	0.44	0.8968	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	MGST3--PBX1	33	1	MGST3	1433	chr1:165600530:+	PBX1	43616	chr1:164761731:+	ONLY_REF_SPLICE	YES	12	30	0.74	0.53	0.3746	0.0114	MGST3->chr1:165600098-165631033:+,microsomal_glutathione_S-transferase_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	NCIH1694_LUNG	0.53	0.74	0.386	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	RP11-1319K7.1--OCLN	28	11	RP11-1319K7.1	12960	chr5:69394512:-	OCLN	23178	chr5:68830521:+	ONLY_REF_SPLICE	YES	7	9	0.85	0.81	0.3179	0.1249	GTEx_FI:{Blood=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Breast=[count:2=pct:1.8],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Spleen=[count:1=pct:0.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3]},RP11-1319K7.1->chr5:69390202-69424261:-,OCLN->chr5:68788119-68853931:+,occludin	NCIH1694_LUNG	0.81	0.85	0.4428	TRUE	18	3	1	7	0	FALSE	ACH-000431
NCIH1694_LUNG	COPA--DEDD	1	107	COPA	22656	chr1:160264558:-	DEDD	32973	chr1:161100637:-	ONLY_REF_SPLICE	YES	351	36	0.24	0.75	0.0114	1.2147	COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha,DEDD->chr1:161090764-161102478:-,death_effector_domain_containing	NCIH1694_LUNG	0.24	0.75	1.2261	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	PPOX--LRRC52	23	14	PPOX	1825	chr1:161137024:+	LRRC52	12889	chr1:165532742:+	ONLY_REF_SPLICE	YES	50	0	0.43	1	0.2611	0.1589	PPOX->chr1:161136200-161147803:+,protoporphyrinogen_oxidase,LRRC52->chr1:165513244-165533198:+,leucine_rich_repeat_containing_52	NCIH1694_LUNG	0.43	1	0.42	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	ANKRD28--TBC1D5	24	9	ANKRD28	1395	chr3:15900884:-	TBC1D5	63147	chr3:17550097:-	ONLY_REF_SPLICE	YES	9	22	0.79	0.6	0.2725	0.1022	ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	NCIH1694_LUNG	0.6	0.79	0.3747	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	HPRT1--ZNF75D	6	79	HPRT1	3674	chrX:133609394:+	ZNF75D	27922	chrX:134383248:-	ONLY_REF_SPLICE	YES	294	63	0.22	0.57	0.0681	0.8969	HPRT1->chrX:133594183-133654543:+,hypoxanthine_phosphoribosyltransferase_1,ZNF75D->chrX:134382867-134478012:-,zinc_finger_protein_75D	NCIH1694_LUNG	0.22	0.57	0.965	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	MACF1--SDCCAG8	1	95	MACF1	77261	chr1:39854330:+	SDCCAG8	141765	chr1:243504341:+	ONLY_REF_SPLICE	NO	572	267	0.14	0.26	0.0114	1.0785	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	NCIH1694_LUNG	0.14	0.26	1.0899	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	RP11-499F3.2--TYW1	24	3	RP11-499F3.2	1198	chr15:82163269:-	TYW1	23788	chr7:66648113:+	ONLY_REF_SPLICE	YES	0	76	1	0.26	0.2725	0.0341	RP11-499F3.2->chr15:81952823-82163466:-,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	NCIH1694_LUNG	0.26	1	0.3066	TRUE	1	3	0	7	3	TRUE	ACH-000431
NCIH1694_LUNG	MFSD2A--ATF6	21	11	MFSD2A	10442	chr1:40435329:+	ATF6	21314	chr1:161789423:+	INCL_NON_REF_SPLICE	YES	659	72	0.05	0.31	0.2384	0.1249	MFSD2A->chr1:40420802-40435638:+,major_facilitator_superfamily_domain_containing_2A,ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+	NCIH1694_LUNG	0.05	0.31	0.3633	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	RP11-680G10.1--GSE1	22	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	346	1	0.07	0.2498	0.0681	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1694_LUNG	0.07	1	0.3179	TRUE	465	1949	224	605	0	FALSE	ACH-000431
NCIH1694_LUNG	MT-ND4--MT-ND4L	11	47	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	15	0	0.79	1	0.1249	0.5336	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1694_LUNG	0.79	1	0.6585	FALSE	344	827	44	306	0	FALSE	ACH-000431
NCIH1694_LUNG	PLXDC1--TAF13	20	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2271	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH1694_LUNG	1	1	0.2271	TRUE	7	10	0	216	0	FALSE	ACH-000431
NCIH1694_LUNG	ANKRD28--TBC1D5	17	11	ANKRD28	1395	chr3:15900884:-	TBC1D5	53042	chr3:17665405:-	ONLY_REF_SPLICE	YES	9	24	0.76	0.54	0.193	0.1249	ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	NCIH1694_LUNG	0.54	0.76	0.3179	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	CCDC88A--SMEK2	17	10	CCDC88A	33553	chr2:55535945:-	SMEK2	52229	chr2:55842642:-	ONLY_REF_SPLICE	YES	138	281	0.16	0.09	0.193	0.1135	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,SMEK2->chr2:55774428-55846015:-	NCIH1694_LUNG	0.09	0.16	0.3065	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	UNC80--MAP2	18	4	UNC80	33505	chr2:210745818:+	MAP2	98132	chr2:210557349:+	ONLY_REF_SPLICE	YES	15	235	0.59	0.09	0.2043	0.0454	LOCAL_REARRANGEMENT:+:[37875],UNC80->chr2:210636717-210864024:+,unc-80_homolog,_NALCN_activator,MAP2->Oncogene{Bushman},chr2:210288782-210598842:+,microtubule_associated_protein_2	NCIH1694_LUNG	0.09	0.59	0.2497	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	UBFD1--SCNN1B	3	59	UBFD1	7558	chr16:23576053:+	SCNN1B	23306	chr16:23359913:+	ONLY_REF_SPLICE	YES	144	101	0.3	0.38	0.0341	0.6698	UBFD1->chr16:23568392-23585710:+,ubiquitin_family_domain_containing_1,SCNN1B->Oncogene{Bushman},chr16:23289552-23392620:+,sodium_channel_epithelial_1_beta_subunit	NCIH1694_LUNG	0.3	0.38	0.7039	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	CCDC88A--SMEK2	10	21	CCDC88A	33530	chr2:55535968:-	SMEK2	49365	chr2:55845517:-	INCL_NON_REF_SPLICE	YES	116	5	0.21	0.86	0.1135	0.2384	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,SMEK2->chr2:55774428-55846015:-	NCIH1694_LUNG	0.21	0.86	0.3519	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	AP000525.9--LA16c-60G3.6	15	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1703	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH1694_LUNG	1	1	0.1703	TRUE	0	42	0	133	42	FALSE	ACH-000431
NCIH1694_LUNG	MACF1--SDCCAG8	3	45	MACF1	66028	chr1:39833986:+	SDCCAG8	139424	chr1:243493842:+	ONLY_REF_SPLICE	YES	406	42	0.11	0.53	0.0341	0.5109	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	NCIH1694_LUNG	0.11	0.53	0.545	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	MT-ND4--MT-ND4L	4	41	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	14	1	0.76	0.98	0.0454	0.4655	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1694_LUNG	0.76	0.98	0.5109	FALSE	344	826	44	306	0	FALSE	ACH-000431
NCIH1694_LUNG	NIPBL--RHOXF2B	7	28	NIPBL	10585	chr5:36976144:+	RHOXF2B	57255	chrX:119206810:-	INCL_NON_REF_SPLICE	YES	53	0	0.4	1	0.0795	0.3179	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,RHOXF2B->Rhox_homeobox_family_member_2B,chrX:119205848-119211707:-	NCIH1694_LUNG	0.4	1	0.3974	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	TRIT1--AKT3	7	28	TRIT1	1194	chr1:40348990:-	AKT3	28589	chr1:243859018:-	ONLY_REF_SPLICE	YES	3426	1688	0.01	0.02	0.0795	0.3179	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3	NCIH1694_LUNG	0.01	0.02	0.3974	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	TRIT1--AKT3	7	26	TRIT1	1194	chr1:40348990:-	AKT3	31151	chr1:243828185:-	ONLY_REF_SPLICE	YES	3426	3166	0.01	0.01	0.0795	0.2952	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3	NCIH1694_LUNG	0.01	0.01	0.3747	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	CTD-2008L17.1--RP11-456O19.2	13	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	3	0	0.82	1	0.1476	0.0114	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1694_LUNG	0.82	1	0.159	FALSE	33	240	4	98	0	FALSE	ACH-000431
NCIH1694_LUNG	NIPBL--RHOXF2B	7	21	NIPBL	10465	chr5:36976024:+	RHOXF2B	57255	chrX:119206810:-	INCL_NON_REF_SPLICE	YES	65	0	0.3	1	0.0795	0.2384	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,RHOXF2B->Rhox_homeobox_family_member_2B,chrX:119205848-119211707:-	NCIH1694_LUNG	0.3	1	0.3179	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	RP11-123O10.4--GRIP1	11	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.1249	0.0568	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1694_LUNG	0.94	1	0.1817	FALSE	416	2512	207	587	0	FALSE	ACH-000431
NCIH1694_LUNG	RP11-554J4.1--AC012358.8	10	9	RP11-554J4.1	1474	chr2:55845517:+	AC012358.8	4806	chr2:55535968:+	INCL_NON_REF_SPLICE	YES	0	7	1	0.73	0.1135	0.1022	RP11-554J4.1->chr2:55845044-55845508:+,AC012358.8->chr2:55535628-55573185:+	NCIH1694_LUNG	0.73	1	0.2157	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	CARS--ATL1	9	10	CARS	16826	chr11:3038336:-	ATL1	38886	chr14:51079977:+	ONLY_REF_SPLICE	YES	117	152	0.14	0.11	0.1022	0.1135	CARS->Oncogene{Bushman},chr11:3022152-3078843:-,cysteinyl-tRNA_synthetase,ATL1->atlastin_GTPase_1,chr14:50999227-51099786:+	NCIH1694_LUNG	0.11	0.14	0.2157	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	XXbac-BPG252P9.9--TUBBP2	11	2	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	1484	0	0.01	1	0.1249	0.0227	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH1694_LUNG	0.01	1	0.1476	TRUE	0	1	0	48	1	FALSE	ACH-000431
NCIH1694_LUNG	TRIT1--TSNAX	9	8	TRIT1	1194	chr1:40348990:-	TSNAX	24952	chr1:231696874:+	ONLY_REF_SPLICE	YES	3426	150	0	0.1	0.1022	0.0908	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,TSNAX->chr1:231664399-231702270:+,translin-associated_factor_X	NCIH1694_LUNG	0	0.1	0.193	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	CDR2L--SMIM5	10	1	CDR2L	1491	chr17:72984217:+	SMIM5	11665	chr17:73630114:+	ONLY_REF_SPLICE	YES	8	5	0.58	0.69	0.1135	0.0114	CDR2L->cerebellar_degeneration_related_protein_2_like,chr17:72983727-73001895:+,SMIM5->chr17:73629514-73637484:+,small_integral_membrane_protein_5	NCIH1694_LUNG	0.58	0.69	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	MT-ND6--MT-TE	9	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.1022	0.0568	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1694_LUNG	0.88	1	0.159	FALSE	499	1288	110	792	0	FALSE	ACH-000431
NCIH1694_LUNG	RP1-34H18.1--NAV3	9	5	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1022	0.0568	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH1694_LUNG	1	1	0.159	TRUE	254	575	65	124	0	FALSE	ACH-000431
NCIH1694_LUNG	TRIT1--AKT3	2	33	TRIT1	1194	chr1:40348990:-	AKT3	18915	chr1:244006584:-	ONLY_REF_SPLICE	YES	3426	106	0.01	0.25	0.0227	0.3746	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3	NCIH1694_LUNG	0.01	0.25	0.3973	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	C15orf57--CBX3	9	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	25	41	0.31	0.21	0.1022	0.0227	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1694_LUNG	0.21	0.31	0.1249	TRUE	267	562	48	632	0	FALSE	ACH-000431
NCIH1694_LUNG	MT-TA--MT-TC	9	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1022	0.0227	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1694_LUNG	1	1	0.1249	FALSE	462	80	0	856	0	FALSE	ACH-000431
NCIH1694_LUNG	NIPBL--RHOXF2B	4	21	NIPBL	10444	chr5:36976003:+	RHOXF2B	57255	chrX:119206810:-	INCL_NON_REF_SPLICE	YES	62	0	0.29	1	0.0454	0.2384	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,RHOXF2B->Rhox_homeobox_family_member_2B,chrX:119205848-119211707:-	NCIH1694_LUNG	0.29	1	0.2838	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	MT-ND4--MT-ND4L	3	24	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	13	1	0.68	0.96	0.0341	0.2725	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1694_LUNG	0.68	0.96	0.3066	FALSE	344	821	44	306	0	FALSE	ACH-000431
NCIH1694_LUNG	ANKRD28--TBC1D5	6	11	ANKRD28	2465	chr3:15855747:-	TBC1D5	53042	chr3:17665405:-	ONLY_REF_SPLICE	YES	12	24	0.59	0.41	0.0681	0.1249	ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	NCIH1694_LUNG	0.41	0.59	0.193	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	KANSL1--ARL17B	3	23	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	100	86	0.21	0.23	0.0341	0.2611	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH1694_LUNG	0.21	0.23	0.2952	TRUE	105	90	7	93	0	FALSE	ACH-000431
NCIH1694_LUNG	KANSL1--ARL17B	1	28	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	77	66	0.27	0.31	0.0114	0.3179	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH1694_LUNG	0.27	0.31	0.3293	TRUE	20	16	0	28	0	FALSE	ACH-000431
NCIH1694_LUNG	MT-ND6--MT-TE	8	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0908	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1694_LUNG	1	1	0.0908	FALSE	499	1288	110	792	0	FALSE	ACH-000431
NCIH1694_LUNG	PPOX--LRRC52	4	16	PPOX	2077	chr1:161137276:+	LRRC52	12889	chr1:165532742:+	ONLY_REF_SPLICE	YES	71	0	0.22	1	0.0454	0.1816	PPOX->chr1:161136200-161147803:+,protoporphyrinogen_oxidase,LRRC52->chr1:165513244-165533198:+,leucine_rich_repeat_containing_52	NCIH1694_LUNG	0.22	1	0.227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	UNC80--MAP2	7	4	UNC80	33505	chr2:210745818:+	MAP2	98144	chr2:210557361:+	ONLY_REF_SPLICE	YES	15	230	0.42	0.05	0.0795	0.0454	LOCAL_REARRANGEMENT:+:[37875],UNC80->chr2:210636717-210864024:+,unc-80_homolog,_NALCN_activator,MAP2->Oncogene{Bushman},chr2:210288782-210598842:+,microtubule_associated_protein_2	NCIH1694_LUNG	0.05	0.42	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	ANKRD13B--TAOK1	7	3	ANKRD13B	4927	chr17:27935258:+	TAOK1	19764	chr17:27805269:+	ONLY_REF_SPLICE	YES	87	102	0.1	0.09	0.0795	0.0341	LOCAL_REARRANGEMENT:+:[37865],ANKRD13B->ankyrin_repeat_domain_13B,chr17:27916787-27941779:+,TAOK1->TAO_kinase_1,chr17:27717482-27878922:+	NCIH1694_LUNG	0.09	0.1	0.1136	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	TRIT1--AKT3	5	11	TRIT1	1194	chr1:40348990:-	AKT3	40115	chr1:243716245:-	ONLY_REF_SPLICE	YES	3426	2108	0	0.01	0.0568	0.1249	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3	NCIH1694_LUNG	0	0.01	0.1817	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	TRIT1--AKT3	5	9	TRIT1	1194	chr1:40348990:-	AKT3	41330	chr1:243708899:-	ONLY_REF_SPLICE	YES	3426	2118	0	0.01	0.0568	0.1022	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3	NCIH1694_LUNG	0	0.01	0.159	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	TRIT1--AKT3	2	21	TRIT1	1194	chr1:40348990:-	AKT3	33408	chr1:243801044:-	ONLY_REF_SPLICE	YES	3426	2886	0.01	0.01	0.0227	0.2384	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3	NCIH1694_LUNG	0.01	0.01	0.2611	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	CKB--MT-CO1	6	4	CKB	4320	chr14:103986129:-	MT-CO1	7451	chrM:5901:+	INCL_NON_REF_SPLICE	YES	437	0	0.02	1	0.0681	0.0454	CKB->chr14:103985996-103989448:-,creatine_kinase_B,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1694_LUNG	0.02	1	0.1135	FALSE	0	0	0	3	0	FALSE	ACH-000431
NCIH1694_LUNG	MT-ND4--MT-ND4L	4	12	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	288	0	0.05	1	0.0454	0.1362	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1694_LUNG	0.05	1	0.1816	FALSE	344	827	44	306	0	FALSE	ACH-000431
NCIH1694_LUNG	AP003900.6--AC011718.2	5	7	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0568	0.0795	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH1694_LUNG	0.92	1	0.1363	TRUE	0	5	0	45	5	FALSE	ACH-000431
NCIH1694_LUNG	MFSD2A--ATF6	6	3	MFSD2A	6799	chr1:40431686:+	ATF6	21314	chr1:161789423:+	ONLY_REF_SPLICE	YES	848	72	0.01	0.11	0.0681	0.0341	MFSD2A->chr1:40420802-40435638:+,major_facilitator_superfamily_domain_containing_2A,ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+	NCIH1694_LUNG	0.01	0.11	0.1022	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	CCDC88A--SMEK2	3	13	CCDC88A	33553	chr2:55535945:-	SMEK2	49769	chr2:55845113:-	ONLY_REF_SPLICE	YES	138	8	0.1	0.67	0.0341	0.1476	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,SMEK2->chr2:55774428-55846015:-	NCIH1694_LUNG	0.1	0.67	0.1817	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0681	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1694_LUNG	1	1	0.0681	FALSE	499	1288	110	792	0	FALSE	ACH-000431
NCIH1694_LUNG	TRIT1--AKT3	1	20	TRIT1	1194	chr1:40348990:-	AKT3	34540	chr1:243778463:-	ONLY_REF_SPLICE	NO	3426	2893	0.01	0.01	0.0114	0.2271	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3	NCIH1694_LUNG	0.01	0.01	0.2385	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	TRIT1--AKT3	1	20	TRIT1	9993	chr1:40312892:-	AKT3	34540	chr1:243778463:-	ONLY_REF_SPLICE	YES	2942	2893	0.01	0.01	0.0114	0.2271	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3	NCIH1694_LUNG	0.01	0.01	0.2385	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	TRIT1--AKT3	4	8	TRIT1	1194	chr1:40348990:-	AKT3	42418	chr1:243675728:-	ONLY_REF_SPLICE	YES	3426	2138	0	0.01	0.0454	0.0908	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3	NCIH1694_LUNG	0	0.01	0.1362	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	TRIT1--AKT3	1	19	TRIT1	4505	chr1:40319642:-	AKT3	35606	chr1:243777041:-	ONLY_REF_SPLICE	YES	3229	2801	0.01	0.01	0.0114	0.2157	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3	NCIH1694_LUNG	0.01	0.01	0.2271	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	ARHGAP12--ZNF277	4	6	ARHGAP12	3926	chr10:32197100:-	ZNF277	27702	chr7:111926928:+	ONLY_REF_SPLICE	YES	35	4	0.22	0.71	0.0454	0.0681	ARHGAP12->Rho_GTPase_activating_protein_12,chr10:32094365-32217742:-,ZNF277->chr7:111846643-111983151:+,zinc_finger_protein_277	NCIH1694_LUNG	0.22	0.71	0.1135	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	MT-ND6--MT-TE	4	6	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0454	0.0681	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1694_LUNG	0.83	1	0.1135	FALSE	499	1288	110	792	0	FALSE	ACH-000431
NCIH1694_LUNG	NOP58--CDK15	4	6	NOP58	1271	chr2:203130709:+	CDK15	25795	chr2:202687532:+	ONLY_REF_SPLICE	YES	494	0	0.02	1	0.0454	0.0681	NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+,CDK15->chr2:202655184-202760273:+,cyclin-dependent_kinase_15	NCIH1694_LUNG	0.02	1	0.1135	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	PPOX--LRRC52	3	10	PPOX	1525	chr1:161136724:+	LRRC52	12889	chr1:165532742:+	ONLY_REF_SPLICE	YES	95	0	0.12	1	0.0341	0.1135	PPOX->chr1:161136200-161147803:+,protoporphyrinogen_oxidase,LRRC52->chr1:165513244-165533198:+,leucine_rich_repeat_containing_52	NCIH1694_LUNG	0.12	1	0.1476	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	PPOX--LRRC52	1	16	PPOX	2718	chr1:161137917:+	LRRC52	12889	chr1:165532742:+	ONLY_REF_SPLICE	NO	78	0	0.18	1	0.0114	0.1816	PPOX->chr1:161136200-161147803:+,protoporphyrinogen_oxidase,LRRC52->chr1:165513244-165533198:+,leucine_rich_repeat_containing_52	NCIH1694_LUNG	0.18	1	0.193	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	FAM49B--ASAP1	2	10	FAM49B	8896	chr8:130915558:-	ASAP1	54362	chr8:131149284:-	ONLY_REF_SPLICE	YES	420	119	0.03	0.09	0.0227	0.1135	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[34978],FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-	NCIH1694_LUNG	0.03	0.09	0.1362	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	FCF1P7--SLAMF1	4	2	FCF1P7	1430	chr1:243430992:-	SLAMF1	9093	chr1:160593976:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0454	0.0227	FCF1P7->FCF1_pseudogene_7,chr1:243430559-243431421:-,SLAMF1->chr1:160577890-160617085:-,signaling_lymphocytic_activation_molecule_family_member_1	NCIH1694_LUNG	1	1	0.0681	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	PIP5K1B--PGM5	4	2	PIP5K1B	1104	chr9:71320678:+	PGM5	39800	chr9:70999314:+	ONLY_REF_SPLICE	YES	0	96	1	0.06	0.0454	0.0227	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},PIP5K1B->chr9:71320575-71624092:+,phosphatidylinositol-4-phosphate_5-kinase_type_1_beta,PGM5->chr9:70943224-71145977:+,phosphoglucomutase_5	NCIH1694_LUNG	0.06	1	0.0681	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	XXbac-BPG252P9.9--TUBBP2	4	2	XXbac-BPG252P9.9	1137	chr6:30691518:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	3921	0	0	1	0.0454	0.0227	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH1694_LUNG	0	1	0.0681	FALSE	0	1	0	48	1	FALSE	ACH-000431
NCIH1694_LUNG	ANKRD28--TBC1D5	2	9	ANKRD28	1395	chr3:15900884:-	TBC1D5	58758	chr3:17603634:-	ONLY_REF_SPLICE	YES	9	21	0.55	0.34	0.0227	0.1022	ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	NCIH1694_LUNG	0.34	0.55	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	APOPT1--MARK3	3	5	APOPT1	7546	chr14:104053701:+	MARK3	23252	chr14:103915256:+	ONLY_REF_SPLICE	YES	259	346	0.03	0.02	0.0341	0.0568	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:+:[59131],APOPT1->apoptogenic_1,_mitochondrial,chr14:104029299-104073860:+,MARK3->chr14:103851729-103970168:+,microtubule_affinity_regulating_kinase_3	NCIH1694_LUNG	0.02	0.03	0.0909	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0454	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1694_LUNG	1	1	0.0454	FALSE	499	1288	110	792	0	FALSE	ACH-000431
NCIH1694_LUNG	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0.0454	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1694_LUNG	1	1	0.0795	FALSE	462	80	0	856	0	FALSE	ACH-000431
NCIH1694_LUNG	ANKRD28--TBC1D5	1	11	ANKRD28	1395	chr3:15900884:-	TBC1D5	50863	chr3:17688548:-	ONLY_REF_SPLICE	YES	9	27	0.57	0.31	0.0114	0.1249	ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	NCIH1694_LUNG	0.31	0.57	0.1363	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	NCSTN--SLAMF1	3	3	NCSTN	2555	chr1:160314616:+	SLAMF1	23918	chr1:160582370:-	ONLY_REF_SPLICE	YES	175	1	0.03	0.86	0.0341	0.0341	NCSTN->chr1:160313062-160328742:+,nicastrin,SLAMF1->chr1:160577890-160617085:-,signaling_lymphocytic_activation_molecule_family_member_1	NCIH1694_LUNG	0.03	0.86	0.0682	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	XXbac-BPG252P9.9--TUBBP2	3	3	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	NO	3628	0	0	1	0.0341	0.0341	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH1694_LUNG	0	1	0.0682	FALSE	0	1	0	48	1	FALSE	ACH-000431
NCIH1694_LUNG	MARCH6--CAMSAP2	3	2	MARCH6	28781	chr5:10430140:+	CAMSAP2	40986	chr1:200729967:+	ONLY_REF_SPLICE	YES	414	90	0.01	0.05	0.0341	0.0227	MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6,CAMSAP2->calmodulin_regulated_spectrin_associated_protein_family_member_2,chr1:200708686-200829832:+	NCIH1694_LUNG	0.01	0.05	0.0568	FALSE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	XXbac-BPG252P9.9--TUBBP2	3	2	XXbac-BPG252P9.9	1068	chr6:30691587:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	2545	0	0	1	0.0341	0.0227	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH1694_LUNG	0	1	0.0568	FALSE	0	1	0	48	1	FALSE	ACH-000431
NCIH1694_LUNG	MGST3--PBX1	3	1	MGST3	1433	chr1:165600530:+	PBX1	37736	chr1:164651547:+	ONLY_REF_SPLICE	YES	12	32	0.25	0.11	0.0341	0.0114	MGST3->chr1:165600098-165631033:+,microsomal_glutathione_S-transferase_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	NCIH1694_LUNG	0.11	0.25	0.0455	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	MT-TA--MT-TC	3	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0.0114	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1694_LUNG	1	1	0.0455	FALSE	462	80	0	856	0	FALSE	ACH-000431
NCIH1694_LUNG	PVT1--SNTB1	3	1	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	26	0	0.13	1	0.0341	0.0114	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH1694_LUNG	0.13	1	0.0455	TRUE	0	0	0	25	0	FALSE	ACH-000431
NCIH1694_LUNG	RP11-554J4.1--AC012358.8	3	1	RP11-554J4.1	1070	chr2:55845113:+	AC012358.8	4783	chr2:55535945:+	INCL_NON_REF_SPLICE	YES	1	12	0.8	0.25	0.0341	0.0114	RP11-554J4.1->chr2:55845044-55845508:+,AC012358.8->chr2:55535628-55573185:+	NCIH1694_LUNG	0.25	0.8	0.0455	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	NCOR2--SCARB1	3	0	NCOR2	2329	chr12:125020111:-	SCARB1	67583	chr12:125302253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	YOSHIHARA_TCGA_num_samples[BRCA:1|LAML:1|LUAD:2],NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1	NCIH1694_LUNG	1	1	0.0341	TRUE	0	2	0	1	1	TRUE	ACH-000431
NCIH1694_LUNG	PAX6--CCDC73	3	0	PAX6	12409	chr11:31822239:-	CCDC73	27006	chr11:32781804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	PAX6->Oncogene{Bushman},chr11:31806340-31839509:-,paired_box_6,CCDC73->chr11:32623792-32816204:-,coiled-coil_domain_containing_73	NCIH1694_LUNG	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	TRIT1--AKT3	1	8	TRIT1	4505	chr1:40319642:-	AKT3	42418	chr1:243675728:-	ONLY_REF_SPLICE	NO	3229	2138	0	0	0.0114	0.0908	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3	NCIH1694_LUNG	0	0	0.1022	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	RP11-1319K7.1--OCLN	2	2	RP11-1319K7.1	11795	chr5:69396543:-	OCLN	23178	chr5:68830521:+	ONLY_REF_SPLICE	YES	10	9	0.29	0.31	0.0227	0.0227	GTEx_FI:{Blood=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Breast=[count:2=pct:1.8],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Spleen=[count:1=pct:0.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3]},RP11-1319K7.1->chr5:69390202-69424261:-,OCLN->chr5:68788119-68853931:+,occludin	NCIH1694_LUNG	0.29	0.31	0.0454	TRUE	5	2	0	4	0	FALSE	ACH-000431
NCIH1694_LUNG	CD84--C1orf198	2	1	CD84	1125	chr1:160549182:-	C1orf198	19305	chr1:231004661:-	ONLY_REF_SPLICE	YES	1	21	0.75	0.12	0.0227	0.0114	CD84->CD84_molecule,chr1:160510885-160549306:-,C1orf198->chr1:230972865-231005335:-,chromosome_1_open_reading_frame_198	NCIH1694_LUNG	0.12	0.75	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	MACF1--SDCCAG8	2	1	MACF1	77261	chr1:39854330:+	SDCCAG8	145160	chr1:243579004:+	ONLY_REF_SPLICE	YES	572	148	0.01	0.02	0.0227	0.0114	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	NCIH1694_LUNG	0.01	0.02	0.0341	FALSE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	RP11-123O10.4--GRIP1	1	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	NO	0	1	1	0.86	0.0114	0.0568	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1694_LUNG	0.86	1	0.0682	FALSE	9	21	5	22	0	FALSE	ACH-000431
NCIH1694_LUNG	TULP4--RP11-732M18.3	2	1	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	29	4	0.09	0.43	0.0227	0.0114	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	NCIH1694_LUNG	0.09	0.43	0.0341	TRUE	126	140	6	21	0	FALSE	ACH-000431
NCIH1694_LUNG	ADARB2--PFKFB3	2	0	ADARB2	1426	chr10:1779245:-	PFKFB3	25690	chr10:6255586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ADARB2->Oncogene{Bushman},adenosine_deaminase,_RNA_specific_B2_(inactive),chr10:1228073-1779670:-,PFKFB3->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_3,chr10:6186881-6277495:+	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	ANKRD28--TBC1D5	1	4	ANKRD28	1395	chr3:15900884:-	TBC1D5	64279	chr3:17470011:-	ONLY_REF_SPLICE	NO	9	43	0.36	0.1	0.0114	0.0454	ANKRD28->ankyrin_repeat_domain_28,chr3:15708743-15901278:-,TBC1D5->TBC1_domain_family_member_5,chr3:17198654-18486309:-	NCIH1694_LUNG	0.1	0.36	0.0568	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	CMPK1--SCP2	2	0	CMPK1	4045	chr1:47834287:+	SCP2	14293	chr1:53407468:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	CMPK1->chr1:47799469-47844511:+,cytidine/uridine_monophosphate_kinase_1,SCP2->chr1:53392901-53517375:+,sterol_carrier_protein_2	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	FRMD6--GNG2	2	0	FRMD6	11179	chr14:52118714:+	GNG2	48315	chr14:52417368:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NEIGHBORS[95468],FRMD6->FERM_domain_containing_6,chr14:51955818-52197445:+,GNG2->G_protein_subunit_gamma_2,chr14:52292913-52446060:+	NCIH1694_LUNG	1	1	0.0227	FALSE	0	1	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	KIAA1429--KIF1A	2	0	KIAA1429	1145	chr8:95565613:-	KIF1A	72001	chr2:241666357:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	KIAA1429->KIAA1429,chr8:95499921-95565757:-,KIF1A->chr2:241653181-241759725:-,kinesin_family_member_1A	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	PABPC4--TSNAX	2	0	PABPC4	6723	chr1:40034474:-	TSNAX	24717	chr1:231696874:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	PABPC4->chr1:40026488-40042462:-,poly(A)_binding_protein_cytoplasmic_4,TSNAX->chr1:231664399-231702270:+,translin-associated_factor_X	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	PPP1R12C--UBE2S	2	0	PPP1R12C	14682	chr19:55603590:-	UBE2S	22526	chr19:55913130:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,UBE2S->chr19:55912652-55919145:-,ubiquitin_conjugating_enzyme_E2_S	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	RP11-338C15.3--INTS7	2	0	RP11-338C15.3	1848	chr1:212837929:-	INTS7	13614	chr1:212161345:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RP11-338C15.3->chr1:212827341-212838776:-,INTS7->chr1:212113741-212208884:-,integrator_complex_subunit_7	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	SDCCAG8--MACF1	1	4	SDCCAG8	19917	chr1:243542165:+	MACF1	103342	chr1:39847625:+	ONLY_REF_SPLICE	YES	162	552	0.03	0.01	0.0114	0.0454	SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	NCIH1694_LUNG	0.01	0.03	0.0568	FALSE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	STMN3--CTBP1	2	0	STMN3	1101	chr20:62284680:-	CTBP1	12699	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	STMN3->chr20:62271061-62284780:-,stathmin_3,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	TRIT1--AKT3	1	4	TRIT1	1194	chr1:40348990:-	AKT3	43521	chr1:243668636:-	ONLY_REF_SPLICE	YES	3426	2057	0	0	0.0114	0.0454	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3	NCIH1694_LUNG	0	0	0.0568	FALSE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	ZC3H7A--GSPT1	2	0	ZC3H7A	2049	chr16:11890075:-	GSPT1	34209	chr16:11984996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_REARRANGEMENT:-:[70862],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,GSPT1->G1_to_S_phase_transition_1,Oncogene{Bushman},chr16:11961985-12009939:-	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	ZC3H7A--GSPT1	2	0	ZC3H7A	1144	chr16:11890980:-	GSPT1	34209	chr16:11984996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_REARRANGEMENT:-:[70862],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,GSPT1->G1_to_S_phase_transition_1,Oncogene{Bushman},chr16:11961985-12009939:-	NCIH1694_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	RP1-118J21.5--SDCCAG8	1	3	RP1-118J21.5	1322	chr1:40363738:+	SDCCAG8	25272	chr1:243579004:+	ONLY_REF_SPLICE	YES	19	148	0.17	0.03	0.0114	0.0341	RP1-118J21.5->chr1:40363417-40364770:+,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	NCIH1694_LUNG	0.03	0.17	0.0455	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	0	1	1	0.8	0.0114	0.0341	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1694_LUNG	0.8	1	0.0455	FALSE	93	270	15	244	0	FALSE	ACH-000431
NCIH1694_LUNG	AKT3--MYCL	1	2	AKT3	17967	chr1:243800913:-	MYCL	37620	chr1:40367115:-	ONLY_REF_SPLICE	YES	2873	1847	0	0	0.0114	0.0227	AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH1694_LUNG	0	0	0.0341	FALSE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	CCDC88A--SMEK2	1	2	CCDC88A	33200	chr2:55536298:-	SMEK2	49769	chr2:55845113:-	ONLY_REF_SPLICE	YES	173	8	0.02	0.27	0.0114	0.0227	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,SMEK2->chr2:55774428-55846015:-	NCIH1694_LUNG	0.02	0.27	0.0341	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	MFSD2A--ATF6	1	2	MFSD2A	1256	chr1:40421057:+	ATF6	21314	chr1:161789423:+	ONLY_REF_SPLICE	YES	1110	72	0	0.04	0.0114	0.0227	MFSD2A->chr1:40420802-40435638:+,major_facilitator_superfamily_domain_containing_2A,ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+	NCIH1694_LUNG	0	0.04	0.0341	FALSE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	MFSD2A--ATF6	1	2	MFSD2A	2391	chr1:40422893:+	ATF6	21314	chr1:161789423:+	ONLY_REF_SPLICE	YES	1168	72	0	0.04	0.0114	0.0227	MFSD2A->chr1:40420802-40435638:+,major_facilitator_superfamily_domain_containing_2A,ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+	NCIH1694_LUNG	0	0.04	0.0341	FALSE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	NAA50--UBR3	1	2	NAA50	3858	chr3:113442806:-	UBR3	26898	chr2:170780439:+	ONLY_REF_SPLICE	NO	412	44	0.01	0.06	0.0114	0.0227	NAA50->N(alpha)-acetyltransferase_50,_NatE_catalytic_subunit,chr3:113435307-113465147:-,UBR3->chr2:170683968-170940641:+,ubiquitin_protein_ligase_E3_component_n-recognin_3_(putative)	NCIH1694_LUNG	0.01	0.06	0.0341	FALSE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	VWDE--PHF14	1	2	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	11	94	0.21	0.03	0.0114	0.0227	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1694_LUNG	0.03	0.21	0.0341	TRUE	0	6	0	17	2	TRUE	ACH-000431
NCIH1694_LUNG	BDP1--BCL2L1	1	1	BDP1	30802	chr5:70820150:+	BCL2L1	54916	chr20:30253889:-	ONLY_REF_SPLICE	NO	67	121	0.03	0.02	0.0114	0.0114	BDP1->B_double_prime_1,_subunit_of_RNA_polymerase_III_transcription_initiation_factor_IIIB,chr5:70751442-70863649:+,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	NCIH1694_LUNG	0.02	0.03	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	CCDC88A--SMEK2	1	1	CCDC88A	29666	chr2:55543064:-	SMEK2	52229	chr2:55842642:-	ONLY_REF_SPLICE	YES	183	281	0.01	0.01	0.0114	0.0114	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,SMEK2->chr2:55774428-55846015:-	NCIH1694_LUNG	0.01	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	CDH23--SLC29A3	1	1	CDH23	15424	chr10:73406374:+	SLC29A3	78598	chr10:73082513:+	ONLY_REF_SPLICE	NO	161	2	0.01	0.5	0.0114	0.0114	LOCAL_REARRANGEMENT:+:[33549],CDH23->cadherin-related_23,chr10:73156691-73575702:+,SLC29A3->chr10:73079015-73123142:+,solute_carrier_family_29_member_3	NCIH1694_LUNG	0.01	0.5	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	CTD-2008L17.1--RP11-456O19.2	1	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0114	0.0114	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH1694_LUNG	0.4	1	0.0228	FALSE	20	187	4	79	0	FALSE	ACH-000431
NCIH1694_LUNG	GATAD2B--NUP210L	1	1	GATAD2B	1243	chr1:153895209:-	NUP210L	46276	chr1:154002530:-	ONLY_REF_SPLICE	YES	62	0	0.03	1	0.0114	0.0114	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|OV:1],LOCAL_REARRANGEMENT:-:[69710],GATAD2B->GATA_zinc_finger_domain_containing_2B,chr1:153777201-153895451:-,NUP210L->chr1:153965161-154127592:-,nucleoporin_210kDa_like	NCIH1694_LUNG	0.03	1	0.0228	TRUE	0	0	0	3	0	FALSE	ACH-000431
NCIH1694_LUNG	MACF1--SDCCAG8	1	1	MACF1	67185	chr1:39835858:+	SDCCAG8	151027	chr1:243652316:+	ONLY_REF_SPLICE	YES	211	763	0.01	0	0.0114	0.0114	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	NCIH1694_LUNG	0	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	MACF1--SDCCAG8	1	1	MACF1	77261	chr1:39854330:+	SDCCAG8	151027	chr1:243652316:+	ONLY_REF_SPLICE	YES	572	763	0	0	0.0114	0.0114	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	NCIH1694_LUNG	0	0	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	NOS1AP--RAD51AP2	1	1	NOS1AP	2581	chr1:162124266:+	RAD51AP2	29884	chr2:17692222:-	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.0114	0.0114	NOS1AP->chr1:162039564-162353321:+,nitric_oxide_synthase_1_adaptor_protein,RAD51AP2->RAD51_associated_protein_2,chr2:17691851-17699706:-	NCIH1694_LUNG	0.11	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000431
NCIH1694_LUNG	PABPC4--SLAMF6	1	1	PABPC4	7774	chr1:40033423:-	SLAMF6	17457	chr1:160466183:-	ONLY_REF_SPLICE	YES	8086	0	0	1	0.0114	0.0114	PABPC4->chr1:40026488-40042462:-,poly(A)_binding_protein_cytoplasmic_4,SLAMF6->Oncogene{Bushman},SLAM_family_member_6,chr1:160454820-160493052:-	NCIH1694_LUNG	0	1	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	PDZD4--NAA10	1	1	PDZD4	1327	chrX:153095694:-	NAA10	13673	chrX:153199454:-	ONLY_REF_SPLICE	YES	121	407	0.02	0	0.0114	0.0114	LOCAL_REARRANGEMENT:-:[98675],PDZD4->PDZ_domain_containing_4,chrX:153067621-153096020:-,NAA10->N(alpha)-acetyltransferase_10,_NatA_catalytic_subunit,Oncogene{Bushman},chrX:153194695-153200676:-	NCIH1694_LUNG	0	0.02	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	1	15	0.67	0.12	0.0114	0.0114	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1694_LUNG	0.12	0.67	0.0228	FALSE	16	356	14	466	0	FALSE	ACH-000431
NCIH1694_LUNG	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	15	0.4	0.12	0.0114	0.0114	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1694_LUNG	0.12	0.4	0.0228	FALSE	0	48	1	163	0	FALSE	ACH-000431
NCIH1694_LUNG	RP11-357C3.3--ARHGEF9	1	1	RP11-357C3.3	1240	chrX:62780712:-	ARHGEF9	32492	chrX:62863928:-	ONLY_REF_SPLICE	YES	63	34	0.03	0.06	0.0114	0.0114	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[73896],RP11-357C3.3->chrX:62563106-62780951:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	NCIH1694_LUNG	0.03	0.06	0.0228	TRUE	1	1	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	TPX2--HM13	1	1	TPX2	15049	chr20:30371724:+	HM13	26139	chr20:30115287:+	ONLY_REF_SPLICE	YES	625	268	0	0.01	0.0114	0.0114	TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	NCIH1694_LUNG	0	0.01	0.0228	FALSE	0	0	0	2	0	FALSE	ACH-000431
NCIH1694_LUNG	UNC80--MAP2	1	1	UNC80	32371	chr2:210742813:+	MAP2	98144	chr2:210557361:+	ONLY_REF_SPLICE	NO	17	230	0.11	0.01	0.0114	0.0114	LOCAL_REARRANGEMENT:+:[37875],UNC80->chr2:210636717-210864024:+,unc-80_homolog,_NALCN_activator,MAP2->Oncogene{Bushman},chr2:210288782-210598842:+,microtubule_associated_protein_2	NCIH1694_LUNG	0.01	0.11	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000431
NCIH1694_LUNG	ZNF286A--GNAS	1	1	ZNF286A	5099	chr17:15611561:+	GNAS	41897	chr20:57470667:+	ONLY_REF_SPLICE	YES	94	758	0.02	0	0.0114	0.0114	ZNF286A->chr17:15602891-15640874:+,chr17:15603006-15648092:+,zinc_finger_protein_286A,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1694_LUNG	0	0.02	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000431
SBC5_LUNG	MT-ND4--MT-ND4L	3271	52	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	2547	0	0.57	1	35.2955	0.5611	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.57	1	35.8566	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	925	448	RPS6KB1	1240	chr17:57970686:+	VMP1	32885	chr17:57842332:+	ONLY_REF_SPLICE	YES	62	641	0.96	0.68	9.9811	4.8341	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.68	0.96	14.8152	TRUE	0	2	0	6	2	TRUE	ACH-000670
SBC5_LUNG	JAM3--KIRREL3	143	18	JAM3	1235	chr11:133939054:+	KIRREL3	19539	chr11:126432807:-	ONLY_REF_SPLICE	YES	47	0	0.77	1	1.543	0.1942	HGNC_GENEFAM,JAM3->chr11:133938820-134021896:+,junctional_adhesion_molecule_3,KIRREL3->chr11:126293254-126873355:-,kin_of_IRRE_like_3_(Drosophila)	SBC5_LUNG	0.77	1	1.7372	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	11	449	RPS6KB1	1839	chr17:57971285:+	VMP1	32885	chr17:57842332:+	ONLY_REF_SPLICE	YES	66	641	0.87	0.42	0.1187	4.8449	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.42	0.87	4.9636	TRUE	0	2	0	6	2	TRUE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	3	448	RPS6KB1	1240	chr17:57970686:+	VMP1	32861	chr17:57842308:+	INCL_NON_REF_SPLICE	YES	62	692	0.88	0.39	0.0324	4.8341	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.39	0.88	4.8665	TRUE	0	2	0	6	2	TRUE	ACH-000670
SBC5_LUNG	DNAJB6--WNT2	80	46	DNAJB6	2764	chr7:157129838:+	WNT2	34011	chr7:116960847:-	ONLY_REF_SPLICE	YES	291	0	0.3	1	0.8632	0.4964	DNAJB6->DnaJ_heat_shock_protein_family_(Hsp40)_member_B6,chr7:157128075-157210133:+,WNT2->Oncogene{Bushman},Wnt_family_member_2,chr7:116916685-116963343:-	SBC5_LUNG	0.3	1	1.3596	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	37	175	RPS6KB1	1240	chr17:57970686:+	VMP1	34053	chr17:57851115:+	ONLY_REF_SPLICE	YES	62	796	0.77	0.21	0.3992	1.8883	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.21	0.77	2.2875	TRUE	0	3	0	2	0	TRUE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	19	234	RPS6KB1	1240	chr17:57970686:+	VMP1	32966	chr17:57842413:+	ONLY_REF_SPLICE	YES	62	538	0.8	0.32	0.205	2.525	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.32	0.8	2.73	TRUE	0	2	0	6	2	TRUE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	64	30	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	62	1220	0.6	0.07	0.6906	0.3237	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.07	0.6	1.0143	TRUE	0	9	0	11	6	TRUE	ACH-000670
SBC5_LUNG	TIMM23B--LINC00843	65	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7014	0.1511	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SBC5_LUNG	1	1	0.8525	TRUE	508	994	45	981	0	FALSE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	2	235	RPS6KB1	1839	chr17:57971285:+	VMP1	32966	chr17:57842413:+	ONLY_REF_SPLICE	YES	66	538	0.78	0.31	0.0216	2.5358	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.31	0.78	2.5574	TRUE	0	2	0	6	2	TRUE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	4	216	MT-ND4	1937	chrM:11696:+	MT-ND4L	5386	chrM:10477:+	INCL_NON_REF_SPLICE	YES	27063	0	0.01	1	0.0432	2.3307	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.01	1	2.3739	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	6	208	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	2125	0	0.09	1	0.0647	2.2444	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.09	1	2.3091	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	6	206	MT-ND4	1362	chrM:11121:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	543	1	0.28	1	0.0647	2.2228	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.28	1	2.2875	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	4	213	MT-ND4	1950	chrM:11709:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	27353	1	0.01	1	0.0432	2.2984	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.01	1	2.3416	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	3	215	MT-ND4	1984	chrM:11743:+	MT-ND4L	5475	chrM:10566:+	INCL_NON_REF_SPLICE	YES	25853	0	0.01	1	0.0324	2.3199	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.01	1	2.3523	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	4	210	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	1948	0	0.1	1	0.0432	2.266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.1	1	2.3092	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	5	205	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	108	0	0.66	1	0.054	2.212	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.66	1	2.266	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	3	211	RPS6KB1	1153	chr17:57970599:+	VMP1	32883	chr17:57842330:+	INCL_NON_REF_SPLICE	YES	59	691	0.78	0.24	0.0324	2.2768	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.24	0.78	2.3092	TRUE	0	2	0	6	2	TRUE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	3	210	MT-ND4	1902	chrM:11661:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	26691	0	0.01	1	0.0324	2.266	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.01	1	2.2984	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	4	205	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	110	0	0.66	1	0.0432	2.212	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.66	1	2.2552	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	5	201	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	84	0	0.71	1	0.054	2.1689	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.71	1	2.2229	FALSE	344	826	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	5	200	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	53	0	0.79	1	0.054	2.1581	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.79	1	2.2121	FALSE	344	826	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	4	200	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	28	0	0.88	1	0.0432	2.1581	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.88	1	2.2013	FALSE	344	826	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	3	201	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	NO	77	0	0.73	1	0.0324	2.1689	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.73	1	2.2013	FALSE	344	826	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	3	200	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	70	1	0.74	1	0.0324	2.1581	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.74	1	2.1905	FALSE	344	826	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	3	200	MT-ND4	1112	chrM:10871:+	MT-ND4L	5464	chrM:10555:+	INCL_NON_REF_SPLICE	YES	27	0	0.88	1	0.0324	2.1581	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.88	1	2.1905	FALSE	344	826	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	3	200	MT-ND4	1168	chrM:10927:+	MT-ND4L	5460	chrM:10551:+	INCL_NON_REF_SPLICE	YES	63	0	0.76	1	0.0324	2.1581	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.76	1	2.1905	FALSE	344	826	44	306	0	FALSE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	27	86	RPS6KB1	1240	chr17:57970686:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	62	1048	0.65	0.1	0.2913	0.928	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.1	0.65	1.2193	TRUE	0	9	0	10	6	TRUE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	13	141	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	16	1	0.91	0.99	0.1403	1.5215	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.91	0.99	1.6618	FALSE	344	821	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	4	163	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	19	0	0.9	1	0.0432	1.7588	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.9	1	1.802	FALSE	344	826	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	43	5	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	20614	7	0	0.87	0.464	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.87	0.518	FALSE	230	193	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	43	5	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	16306	0	0	1	0.464	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.518	FALSE	230	193	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	39	4	MT-ND4	1151	chrM:10910:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	NO	16306	290	0	0.13	0.4208	0.0432	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.13	0.464	FALSE	230	193	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	4	143	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	27	0	0.84	1	0.0432	1.543	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.84	1	1.5862	FALSE	344	826	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	25	53	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	20413	0	0	1	0.2698	0.5719	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0	1	0.8417	FALSE	328	800	43	304	0	FALSE	ACH-000670
SBC5_LUNG	TIMM23--RP11-464F9.1	37	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	221	9	0.15	0.82	0.3992	0.0324	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SBC5_LUNG	0.15	0.82	0.4316	TRUE	519	3926	326	965	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	4	131	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	289	0	0.32	1	0.0432	1.4135	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.32	1	1.4567	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	32	5	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	20612	9	0	0.8	0.3453	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.8	0.3993	FALSE	230	198	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	4	115	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	47	0	0.72	1	0.0432	1.2409	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.72	1	1.2841	FALSE	344	826	44	306	0	FALSE	ACH-000670
SBC5_LUNG	PCBP1-AS1--AC016700.5	28	13	PCBP1-AS1	4300	chr2:70312679:-	AC016700.5	40215	chr2:70351557:-	ONLY_REF_SPLICE	YES	66	23	0.38	0.64	0.3021	0.1403	LOCAL_REARRANGEMENT:-:[35190],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,AC016700.5->chr2:70351168-70352449:-	SBC5_LUNG	0.38	0.64	0.4424	TRUE	0	1	0	1	1	TRUE	ACH-000670
SBC5_LUNG	MT-TA--MT-TC	30	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3237	0.0324	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SBC5_LUNG	1	1	0.3561	FALSE	462	80	0	856	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	21	27	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	24859	60	0	0.44	0.2266	0.2913	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.44	0.5179	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	NIPA2--POLA1	26	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2806	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SBC5_LUNG	1	1	0.2806	TRUE	46	1352	75	139	0	FALSE	ACH-000670
SBC5_LUNG	C15orf57--CBX3	20	15	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	63	23	0.36	0.6	0.2158	0.1619	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SBC5_LUNG	0.36	0.6	0.3777	TRUE	267	562	48	632	0	FALSE	ACH-000670
SBC5_LUNG	RP11-680G10.1--GSE1	22	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	50	1	0.37	0.2374	0.0755	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SBC5_LUNG	0.37	1	0.3129	TRUE	458	1351	185	561	0	FALSE	ACH-000670
SBC5_LUNG	RP11-680G10.1--GSE1	23	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	68	1	0.28	0.2482	0.0324	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SBC5_LUNG	0.28	1	0.2806	TRUE	465	1949	224	605	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	20	13	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	27817	9	0	0.79	0.2158	0.1403	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.79	0.3561	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	4	74	MT-ND4	1779	chrM:11538:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	13605	0	0.01	1	0.0432	0.7985	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.01	1	0.8417	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND6--MT-TE	22	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2374	0.0108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SBC5_LUNG	1	1	0.2482	FALSE	499	1288	110	792	0	FALSE	ACH-000670
SBC5_LUNG	PCBP2--MTND2P28	21	2	PCBP2	11835	chr12:53856343:+	MTND2P28	25766	chr1:565066:+	INCL_NON_REF_SPLICE	YES	1882	0	0.01	1	0.2266	0.0216	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SBC5_LUNG	0.01	1	0.2482	TRUE	0	0	0	9	0	FALSE	ACH-000670
SBC5_LUNG	CELF1--MTCH2	18	9	CELF1	13174	chr11:47508302:-	MTCH2	34243	chr11:47657123:-	ONLY_REF_SPLICE	YES	101	224	0.21	0.11	0.1942	0.0971	YOSHIHARA_TCGA_num_samples[BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[51746],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	SBC5_LUNG	0.11	0.21	0.2913	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	18	5	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	20614	9	0	0.72	0.1942	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.72	0.2482	FALSE	230	193	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	10	35	MT-ND4	1314	chrM:11073:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	320	0	0.12	1	0.1079	0.3777	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.12	1	0.4856	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	13	22	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	27828	0	0	1	0.1403	0.2374	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.3777	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	LINC00578--RP11-114M1.1	14	17	LINC00578	4542	chr3:177347343:+	RP11-114M1.1	10235	chr3:177401415:+	ONLY_REF_SPLICE	YES	32	0	0.49	1	0.1511	0.1834	NEIGHBORS_OVERLAP:+:+:[7623],LINC00578->chr3:177159709-177470093:+,long_intergenic_non-protein_coding_RNA_578,RP11-114M1.1->chr3:177401415-177409038:+	SBC5_LUNG	0.49	1	0.3345	FALSE	0	1	0	2	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	17	5	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	29236	562	0	0.04	0.1834	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.04	0.2374	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND3--MT-ATP8	18	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1942	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	1	1	0.1942	FALSE	351	233	23	137	0	FALSE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	16	7	CNTN1	1151	chr12:41086394:+	MUC19	121261	chr12:40950947:+	ONLY_REF_SPLICE	YES	208	13	0.1	0.64	0.1726	0.0755	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.1	0.64	0.2481	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	MT-CO2--MT-CO1	17	2	MT-CO2	1249	chrM:7834:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8	26741	0.7	0	0.1834	0.0216	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SBC5_LUNG	0	0.7	0.205	FALSE	36	10	0	27	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	10	30	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3823	60	0.01	0.4	0.1079	0.3237	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0.01	0.4	0.4316	FALSE	216	209	16	281	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	11	26	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	24859	202	0	0.15	0.1187	0.2806	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.15	0.3993	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	RP11-96H19.1--RP11-446N19.1	15	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	44	0.93	0.36	0.1619	0.1079	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SBC5_LUNG	0.36	0.93	0.2698	FALSE	467	2173	244	435	0	FALSE	ACH-000670
SBC5_LUNG	DNAJB6--WNT2	12	17	DNAJB6	2764	chr7:157129838:+	WNT2	35336	chr7:116955402:-	ONLY_REF_SPLICE	YES	291	24	0.09	0.55	0.1295	0.1834	DNAJB6->DnaJ_heat_shock_protein_family_(Hsp40)_member_B6,chr7:157128075-157210133:+,WNT2->Oncogene{Bushman},Wnt_family_member_2,chr7:116916685-116963343:-	SBC5_LUNG	0.09	0.55	0.3129	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	12	17	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	250	0	0.1	1	0.1295	0.1834	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.1	1	0.3129	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	3	52	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	250	0	0.18	1	0.0324	0.5611	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.18	1	0.5935	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	3	52	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	13115	0	0	1	0.0324	0.5611	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0	1	0.5935	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	11	19	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	26982	60	0	0.33	0.1187	0.205	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.33	0.3237	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	3	51	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	60	0	0.47	1	0.0324	0.5503	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.47	1	0.5827	FALSE	344	826	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	3	51	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	73	0	0.43	1	0.0324	0.5503	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.43	1	0.5827	FALSE	344	826	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	7	35	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	13115	0	0	1	0.0755	0.3777	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0	1	0.4532	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	47	MT-ND4	2258	chrM:12017:+	MT-ATP8	5406	chrM:8393:+	INCL_NON_REF_SPLICE	NO	2713	0	0.02	1	0.0324	0.5072	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0.02	1	0.5396	FALSE	216	209	16	281	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	7	31	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	25825	0	0	1	0.0755	0.3345	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.41	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	7	30	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	27248	0	0	1	0.0755	0.3237	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.3992	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	4	41	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	45	0	0.5	1	0.0432	0.4424	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0.5	1	0.4856	FALSE	213	207	15	279	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	7	29	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	77	0	0.32	1	0.0755	0.3129	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.32	1	0.3884	FALSE	344	826	44	306	0	FALSE	ACH-000670
SBC5_LUNG	CNTN1--LRRK2	13	4	CNTN1	1151	chr12:41086394:+	LRRK2	82556	chr12:40728769:+	ONLY_REF_SPLICE	YES	208	2	0.08	0.89	0.1403	0.0432	CNTN1->chr12:41086244-41466220:+,contactin_1,LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2	SBC5_LUNG	0.08	0.89	0.1835	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	5	35	MT-ND4	1951	chrM:11710:+	MT-ATP8	5405	chrM:8392:+	INCL_NON_REF_SPLICE	YES	27284	0	0	1	0.054	0.3777	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.4317	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	5	35	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1753	0	0.02	1	0.054	0.3777	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.02	1	0.4317	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	PCBP1-AS1--AC016700.5	10	15	PCBP1-AS1	12795	chr2:70286775:-	AC016700.5	40215	chr2:70351557:-	ONLY_REF_SPLICE	YES	66	23	0.27	0.52	0.1079	0.1619	LOCAL_REARRANGEMENT:-:[35190],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,AC016700.5->chr2:70351168-70352449:-	SBC5_LUNG	0.27	0.52	0.2698	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	11	9	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	28856	0	0	1	0.1187	0.0971	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.2158	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	41	MT-ND4	2103	chrM:11862:+	MT-ATP8	5415	chrM:8402:+	INCL_NON_REF_SPLICE	YES	19057	0	0	1	0.0324	0.4424	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.4748	FALSE	231	215	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	40	MT-ND4	2255	chrM:12014:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	3152	0	0.01	1	0.0324	0.4316	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0.01	1	0.464	FALSE	216	209	16	281	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	6	28	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	27516	0	0	1	0.0647	0.3021	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.3668	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	4	36	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	22835	0	0	1	0.0432	0.3885	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0	1	0.4317	FALSE	343	822	44	305	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	12	3	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	11488	0	0	1	0.1295	0.0324	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.1619	FALSE	230	193	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	39	MT-ND4	2240	chrM:11999:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	4919	0	0.01	1	0.0324	0.4208	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0.01	1	0.4532	FALSE	216	209	16	281	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	6	27	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	23847	60	0	0.35	0.0647	0.2913	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.35	0.356	FALSE	231	215	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	39	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	23922	0	0	1	0.0324	0.4208	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.4532	FALSE	231	215	16	283	0	FALSE	ACH-000670
SBC5_LUNG	CAPNS1--TBCB	10	9	CAPNS1	4609	chr19:36634085:+	TBCB	19301	chr19:36616353:+	INCL_NON_REF_SPLICE	YES	868	216	0.02	0.08	0.1079	0.0971	LOCAL_REARRANGEMENT:+:[13628],CAPNS1->calpain_small_subunit_1,chr19:36630477-36641255:+,TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B	SBC5_LUNG	0.02	0.08	0.205	TRUE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	37	MT-ND4	2170	chrM:11929:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	12688	0	0	1	0.0324	0.3992	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.4316	FALSE	231	215	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	7	21	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	27671	0	0	1	0.0755	0.2266	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.3021	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	5	28	MT-ND4	1903	chrM:11662:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	27501	0	0	1	0.054	0.3021	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.3561	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	4	31	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	27477	0	0	1	0.0432	0.3345	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.3777	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	34	MT-ND4	1959	chrM:11718:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	26616	0	0	1	0.0324	0.3669	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.3993	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	8	14	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	27654	1628	0	0.01	0.0863	0.1511	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.01	0.2374	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	RP11-96H19.1--RP11-446N19.1	8	14	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	2	0.92	0.92	0.0863	0.1511	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SBC5_LUNG	0.92	0.92	0.2374	FALSE	192	492	57	212	0	FALSE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	4	30	RPS6KB1	1839	chr17:57971285:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	66	1220	0.34	0.03	0.0432	0.3237	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.03	0.34	0.3669	TRUE	0	9	0	11	6	TRUE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	10	5	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20612	60	0	0.2	0.1079	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.2	0.1619	FALSE	230	198	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	6	20	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	27519	3	0	0.9	0.0647	0.2158	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.9	0.2805	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	8	12	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	27216	1836	0	0.01	0.0863	0.1295	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.01	0.2158	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	RP11-96H19.1--RP11-446N19.1	10	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	7	44	0.67	0.24	0.1079	0.0432	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SBC5_LUNG	0.24	0.67	0.1511	FALSE	515	4851	409	746	0	FALSE	ACH-000670
SBC5_LUNG	LINC00578--RP11-114M1.1	9	7	LINC00578	4542	chr3:177347343:+	RP11-114M1.1	11442	chr3:177402732:+	ONLY_REF_SPLICE	YES	32	3	0.33	0.84	0.0971	0.0755	NEIGHBORS_OVERLAP:+:+:[7623],LINC00578->chr3:177159709-177470093:+,long_intergenic_non-protein_coding_RNA_578,RP11-114M1.1->chr3:177401415-177409038:+	SBC5_LUNG	0.33	0.84	0.1726	FALSE	0	1	0	2	0	FALSE	ACH-000670
SBC5_LUNG	RP11-96H19.1--RP11-446N19.1	9	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	7	2	0.7	0.89	0.0971	0.0755	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SBC5_LUNG	0.7	0.89	0.1726	FALSE	407	2205	196	549	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	30	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7674	60	0	0.35	0.0324	0.3237	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.35	0.3561	FALSE	218	210	16	281	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	4	25	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	27495	0	0	1	0.0432	0.2698	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.313	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	8	9	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	28438	0	0	1	0.0863	0.0971	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.1834	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	9	5	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20727	60	0	0.19	0.0971	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.19	0.1511	FALSE	230	198	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	9	4	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	12229	0	0	1	0.0971	0.0432	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.1403	FALSE	230	193	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	6	16	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	27300	0	0	1	0.0647	0.1726	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.2373	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	9	2	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	12	0	0.48	1	0.0971	0.0216	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.48	1	0.1187	FALSE	344	821	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	5	17	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	27198	0	0	1	0.054	0.1834	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.2374	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	5	17	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	27523	897	0	0.02	0.054	0.1834	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.02	0.2374	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	25	MT-ND4	2320	chrM:12079:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	3	562	0.9	0.05	0.0324	0.2698	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0.05	0.9	0.3022	FALSE	209	205	15	279	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	8	5	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	21549	0	0	1	0.0863	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.1403	FALSE	231	204	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	5	17	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	27074	0	0	1	0.054	0.1834	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.2374	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	5	16	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	82	0	0.2	1	0.054	0.1726	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.2	1	0.2266	FALSE	344	826	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0971	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SBC5_LUNG	1	1	0.0971	FALSE	462	80	0	856	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	6	10	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	28501	0	0	1	0.0647	0.1079	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.1726	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-TA--MT-TC	8	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0863	0.0216	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SBC5_LUNG	1	1	0.1079	FALSE	462	80	0	856	0	FALSE	ACH-000670
SBC5_LUNG	DNAJB6--WNT2	4	17	DNAJB6	2764	chr7:157129838:+	WNT2	35340	chr7:116955398:-	INCL_NON_REF_SPLICE	YES	291	23	0.07	0.48	0.0432	0.1834	DNAJB6->DnaJ_heat_shock_protein_family_(Hsp40)_member_B6,chr7:157128075-157210133:+,WNT2->Oncogene{Bushman},Wnt_family_member_2,chr7:116916685-116963343:-	SBC5_LUNG	0.07	0.48	0.2266	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	7	5	MT-ND4	1152	chrM:10911:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	16341	5	0	0.71	0.0755	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.71	0.1295	FALSE	230	193	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	4	17	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	250	0	0.08	1	0.0432	0.1834	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	0.08	1	0.2266	FALSE	344	827	44	306	0	FALSE	ACH-000670
SBC5_LUNG	NRG1--RP11-11N9.4	7	4	NRG1	3961	chr8:32406344:+	RP11-11N9.4	29999	chr8:32899153:+	ONLY_REF_SPLICE	YES	208	17	0.05	0.39	0.0755	0.0432	NRG1->chr8:31496902-32622548:+,neuregulin_1,RP11-11N9.4->chr8:32853696-32902373:+	SBC5_LUNG	0.05	0.39	0.1187	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	RP11-120D5.1--MID1	7	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	169	0.73	0.06	0.0755	0.0432	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SBC5_LUNG	0.06	0.73	0.1187	FALSE	16	356	14	466	0	FALSE	ACH-000670
SBC5_LUNG	CAPNS1--TBCB	7	3	CAPNS1	4392	chr19:36633868:+	TBCB	19301	chr19:36616353:+	ONLY_REF_SPLICE	YES	745	216	0.01	0.04	0.0755	0.0324	LOCAL_REARRANGEMENT:+:[13628],CAPNS1->calpain_small_subunit_1,chr19:36630477-36641255:+,TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B	SBC5_LUNG	0.01	0.04	0.1079	TRUE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	DSCR4--KCNJ6	6	7	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	5	0	0.72	1	0.0647	0.0755	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	SBC5_LUNG	0.72	1	0.1402	FALSE	0	24	0	27	0	FALSE	ACH-000670
SBC5_LUNG	FAM172A--BACH2	7	3	FAM172A	12880	chr5:93111865:-	BACH2	33632	chr6:90648069:-	ONLY_REF_SPLICE	YES	6	1	0.62	0.91	0.0755	0.0324	FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,BACH2->BTB_domain_and_CNC_homolog_2,Oncogene{Bushman},chr6:90636248-91006627:-	SBC5_LUNG	0.62	0.91	0.1079	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	19	MT-ND4	1824	chrM:11583:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	26929	9	0	0.71	0.0324	0.205	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.71	0.2374	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	4	15	MT-ND4	1783	chrM:11542:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	27883	60	0	0.24	0.0432	0.1619	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.24	0.2051	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND6--MT-TE	7	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0755	0.0324	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SBC5_LUNG	0.91	1	0.1079	FALSE	499	1288	110	792	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	6	5	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	24115	9	0	0.55	0.0647	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.55	0.1187	FALSE	231	205	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	17	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	26942	0	0	1	0.0324	0.1834	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.2158	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	17	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	27497	500	0	0.04	0.0324	0.1834	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.04	0.2158	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	PCAT1--RP11-382A18.2	7	1	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0755	0.0108	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	SBC5_LUNG	0.89	1	0.0863	TRUE	4	84	1	46	0	FALSE	ACH-000670
SBC5_LUNG	PDE5A--NDNF	7	1	PDE5A	1472	chr4:120549675:-	NDNF	39833	chr4:121966993:-	ONLY_REF_SPLICE	YES	52	1	0.13	0.89	0.0755	0.0108	PDE5A->chr4:120415550-120550146:-,phosphodiesterase_5A,NDNF->chr4:121956768-121994176:-,neuron-derived_neurotrophic_factor	SBC5_LUNG	0.13	0.89	0.0863	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	2	21	RPS6KB1	1240	chr17:57970686:+	VMP1	40168	chr17:57915673:+	ONLY_REF_SPLICE	YES	62	1191	0.27	0.02	0.0216	0.2266	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.02	0.27	0.2482	TRUE	0	9	0	11	6	TRUE	ACH-000670
SBC5_LUNG	CNTN1--LRRK2	6	4	CNTN1	1151	chr12:41086394:+	LRRK2	81455	chr12:40722162:+	ONLY_REF_SPLICE	YES	208	0	0.05	1	0.0647	0.0432	CNTN1->chr12:41086244-41466220:+,contactin_1,LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2	SBC5_LUNG	0.05	1	0.1079	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	16	MT-ND4	1747	chrM:11506:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	NO	27083	0	0	1	0.0324	0.1726	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.205	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	PCBP2--MTND2P28	6	4	PCBP2	11799	chr12:53856307:+	MTND2P28	25731	chr1:565031:+	INCL_NON_REF_SPLICE	YES	1969	0	0.01	1	0.0647	0.0432	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	SBC5_LUNG	0.01	1	0.1079	TRUE	0	0	0	9	0	FALSE	ACH-000670
SBC5_LUNG	ZNF143--IPO7	7	0	ZNF143	1758	chr11:9482623:+	IPO7	38137	chr11:9450087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0755	0	LOCAL_REARRANGEMENT:+:[12193],ZNF143->chr11:9481866-9550071:+,zinc_finger_protein_143,IPO7->chr11:9406169-9469673:+,importin_7	SBC5_LUNG	1	1	0.0755	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	MT-CO2--MT-CO1	5	7	MT-CO2	1370	chrM:7955:+	MT-CO1	5365	chrM:6584:+	INCL_NON_REF_SPLICE	YES	7	27273	0.63	0	0.054	0.0755	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SBC5_LUNG	0	0.63	0.1295	FALSE	36	10	0	27	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	5	7	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	31022	828	0	0.01	0.054	0.0755	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.01	0.1295	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	C15orf57--CBX3	4	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	60	27	0.19	0.34	0.0432	0.1079	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SBC5_LUNG	0.19	0.34	0.1511	TRUE	267	562	48	632	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	14	MT-ND4	1773	chrM:11532:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	27817	7	0	0.71	0.0324	0.1511	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.71	0.1835	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	5	6	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	21611	0	0	1	0.054	0.0647	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.1187	FALSE	231	204	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	4	10	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	27817	967	0	0.01	0.0432	0.1079	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.01	0.1511	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	4	10	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	26982	1836	0	0.01	0.0432	0.1079	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.01	0.1511	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	PCBP1-AS1--AC016700.3	6	2	PCBP1-AS1	12795	chr2:70286775:-	AC016700.3	39619	chr2:70330056:-	ONLY_REF_SPLICE	YES	66	0	0.11	1	0.0647	0.0216	LOCAL_REARRANGEMENT:-:[5048],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,AC016700.3->chr2:70321026-70330352:-	SBC5_LUNG	0.11	1	0.0863	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	PCBP1-AS1--AC016700.5	3	14	PCBP1-AS1	5481	chr2:70310639:-	AC016700.5	40215	chr2:70351557:-	ONLY_REF_SPLICE	YES	61	23	0.22	0.42	0.0324	0.1511	LOCAL_REARRANGEMENT:-:[35190],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,AC016700.5->chr2:70351168-70352449:-	SBC5_LUNG	0.22	0.42	0.1835	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	4	9	MT-ND4	1566	chrM:11325:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	30049	60	0	0.18	0.0432	0.0971	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.18	0.1403	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	5	5	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	20564	9	0	0.53	0.054	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.53	0.108	FALSE	230	193	14	283	0	FALSE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	4	8	CNTN1	1151	chr12:41086394:+	MUC19	103816	chr12:40927035:+	ONLY_REF_SPLICE	YES	208	8	0.05	0.6	0.0432	0.0863	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.05	0.6	0.1295	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	DNAJB6--WNT2	5	4	DNAJB6	2764	chr7:157129838:+	WNT2	36614	chr7:116937930:-	ONLY_REF_SPLICE	YES	291	38	0.03	0.19	0.054	0.0432	DNAJB6->DnaJ_heat_shock_protein_family_(Hsp40)_member_B6,chr7:157128075-157210133:+,WNT2->Oncogene{Bushman},Wnt_family_member_2,chr7:116916685-116963343:-	SBC5_LUNG	0.03	0.19	0.0972	TRUE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0647	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SBC5_LUNG	1	1	0.0647	FALSE	499	1288	110	792	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	4	7	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	NO	21198	0	0	1	0.0432	0.0755	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.1187	FALSE	231	204	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	4	7	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	29055	7	0	0.61	0.0432	0.0755	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.61	0.1187	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	5	3	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	22378	1874	0	0	0.054	0.0324	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0	0.0864	FALSE	231	204	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND6--MT-TE	4	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0.0755	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SBC5_LUNG	1	1	0.1187	FALSE	499	1288	110	792	0	FALSE	ACH-000670
SBC5_LUNG	TDG--LRRC53	3	11	TDG	4592	chr12:104370838:+	LRRC53	17531	chr1:74949059:-	ONLY_REF_SPLICE	YES	62	0	0.18	1	0.0324	0.1187	TDG->chr12:104359582-104382652:+,thymine_DNA_glycosylase,LRRC53->chr1:74935562-74978298:-,leucine_rich_repeat_containing_53	SBC5_LUNG	0.18	1	0.1511	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	1369	chrM:11128:+	MT-ATP8	5409	chrM:8396:+	INCL_NON_REF_SPLICE	YES	28380	0	0	1	0.0324	0.1079	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.1403	FALSE	231	216	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	NO	27700	1040	0	0.01	0.0324	0.1079	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.01	0.1403	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND6--MT-TE	4	6	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0432	0.0647	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SBC5_LUNG	0.91	1	0.1079	FALSE	499	1288	110	792	0	FALSE	ACH-000670
SBC5_LUNG	NRG1--RP11-11N9.4	4	6	NRG1	3961	chr8:32406344:+	RP11-11N9.4	28883	chr8:32853719:+	INCL_NON_REF_SPLICE	YES	208	0	0.05	1	0.0432	0.0647	NRG1->chr8:31496902-32622548:+,neuregulin_1,RP11-11N9.4->chr8:32853696-32902373:+	SBC5_LUNG	0.05	1	0.1079	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	RP11-120D5.1--MID1	4	6	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	7	169	0.59	0.06	0.0432	0.0647	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SBC5_LUNG	0.06	0.59	0.1079	FALSE	0	9	0	55	0	FALSE	ACH-000670
SBC5_LUNG	ATP6V0C--MT-CO2	5	1	ATP6V0C	2886	chr16:2569357:+	MT-CO2	6967	chrM:7804:+	INCL_NON_REF_SPLICE	YES	537	16160	0.01	0	0.054	0.0108	ATP6V0C->ATPase_H+_transporting_V0_subunit_c,chr16:2563871-2570219:+,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SBC5_LUNG	0	0.01	0.0648	FALSE	0	0	0	9	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	4	5	MT-ND4	1244	chrM:11003:+	MT-ATP8	5476	chrM:8463:+	INCL_NON_REF_SPLICE	YES	21442	5	0	0.64	0.0432	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.64	0.0972	FALSE	231	204	14	283	0	FALSE	ACH-000670
SBC5_LUNG	TDG--LRRC53	3	9	TDG	1257	chr12:104359838:+	LRRC53	17531	chr1:74949059:-	ONLY_REF_SPLICE	YES	79	0	0.13	1	0.0324	0.0971	TDG->chr12:104359582-104382652:+,thymine_DNA_glycosylase,LRRC53->chr1:74935562-74978298:-,leucine_rich_repeat_containing_53	SBC5_LUNG	0.13	1	0.1295	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	APP--MT-ND2	4	4	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	1016	7716	0.01	0	0.0432	0.0432	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SBC5_LUNG	0	0.01	0.0864	FALSE	0	1	0	51	0	FALSE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	4	4	CNTN1	1151	chr12:41086394:+	MUC19	123251	chr12:40953037:+	ONLY_REF_SPLICE	YES	208	11	0.04	0.42	0.0432	0.0432	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.04	0.42	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	CTGF--MT-ND2	5	0	CTGF	2068	chr6:132271446:-	MT-ND2	7956	chrM:5227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SBC5_LUNG	1	1	0.054	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	HSPBP1--GRK5	5	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SBC5_LUNG	1	1	0.054	TRUE	1	39	0	134	39	FALSE	ACH-000670
SBC5_LUNG	MT-CO2--MT-CO1	4	4	MT-CO2	1306	chrM:7891:+	MT-CO1	5170	chrM:6389:+	INCL_NON_REF_SPLICE	YES	8	24715	0.5	0	0.0432	0.0432	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SBC5_LUNG	0	0.5	0.0864	FALSE	36	10	0	27	0	FALSE	ACH-000670
SBC5_LUNG	MT-CO2--MT-CO1	3	8	MT-CO2	1443	chrM:8028:+	MT-CO1	5365	chrM:6584:+	INCL_NON_REF_SPLICE	YES	5	27273	0.69	0	0.0324	0.0863	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SBC5_LUNG	0	0.69	0.1187	FALSE	36	10	0	27	0	FALSE	ACH-000670
SBC5_LUNG	MT-CO2--MT-CO1	4	4	MT-CO2	1282	chrM:7867:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	8	23915	0.5	0	0.0432	0.0432	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SBC5_LUNG	0	0.5	0.0864	FALSE	36	10	0	27	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND3--MT-ATP8	5	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	1	1	0.054	FALSE	351	233	23	137	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	1471	chrM:11230:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	28278	60	0	0.14	0.0324	0.0755	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.14	0.1079	FALSE	231	217	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	26034	0	0	1	0.0324	0.0755	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.1079	FALSE	231	205	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	1342	chrM:11101:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	27845	60	0	0.14	0.0324	0.0755	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.14	0.1079	FALSE	231	215	16	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-CO2--MT-CO1	4	2	MT-CO2	1222	chrM:7807:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	5	26741	0.55	0	0.0432	0.0216	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SBC5_LUNG	0	0.55	0.0648	FALSE	36	10	0	27	0	FALSE	ACH-000670
SBC5_LUNG	MT-CO2--MT-CO1	4	2	MT-CO2	1278	chrM:7863:+	MT-CO1	5338	chrM:6557:+	INCL_NON_REF_SPLICE	YES	6	27262	0.5	0	0.0432	0.0216	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SBC5_LUNG	0	0.5	0.0648	FALSE	36	10	0	27	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1200	chrM:10959:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	NO	20348	0	0	1	0.0324	0.0647	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.0971	FALSE	230	193	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1285	chrM:11044:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	24361	9	0	0.5	0.0324	0.0647	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.5	0.0971	FALSE	231	205	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	4	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0.0216	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	1	1	0.0648	FALSE	344	821	44	306	0	FALSE	ACH-000670
SBC5_LUNG	ADAMTSL1--ALDH1A1	4	1	ADAMTSL1	1402	chr9:18474293:+	ALDH1A1	51549	chr9:75555168:-	ONLY_REF_SPLICE	YES	158	1559	0.03	0	0.0432	0.0108	ADAMTSL1->ADAMTS_like_1,chr9:18473892-18910948:+,ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-	SBC5_LUNG	0	0.03	0.054	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	DPYD--PROK1	4	1	DPYD	1166	chr1:98386440:-	PROK1	35669	chr1:110996583:+	ONLY_REF_SPLICE	YES	63	0	0.07	1	0.0432	0.0108	DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,PROK1->chr1:110993822-110999976:+,prokineticin_1	SBC5_LUNG	0.07	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	MET--CAV1	4	1	MET	4452	chr7:116340338:+	CAV1	32070	chr7:116166579:+	ONLY_REF_SPLICE	YES	669	324	0.01	0.02	0.0432	0.0108	{Klijn_CCL:Head-Neck=1},MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	SBC5_LUNG	0.01	0.02	0.054	FALSE	0	0	0	2	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND3--MT-ATP8	4	1	MT-ND3	1283	chrM:10341:+	MT-ATP8	4411	chrM:8430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0.0108	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	1	1	0.054	FALSE	351	233	23	137	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	27134	1628	0	0	0.0324	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0	0.0864	FALSE	231	205	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1220	chrM:10979:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20833	0	0	1	0.0324	0.054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.0864	FALSE	231	204	14	283	0	FALSE	ACH-000670
SBC5_LUNG	PCBP1-AS1--AC016700.3	4	1	PCBP1-AS1	4300	chr2:70312679:-	AC016700.3	39619	chr2:70330056:-	ONLY_REF_SPLICE	YES	66	0	0.07	1	0.0432	0.0108	LOCAL_REARRANGEMENT:-:[5048],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,AC016700.3->chr2:70321026-70330352:-	SBC5_LUNG	0.07	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	STAU2--RP11-434I12.2	4	1	STAU2	23792	chr8:74464247:-	RP11-434I12.2	39667	chr8:74227840:-	ONLY_REF_SPLICE	YES	766	1	0.01	0.83	0.0432	0.0108	NEIGHBORS[63908],STAU2->chr8:74332604-74659943:-,staufen_double-stranded_RNA_binding_protein_2,RP11-434I12.2->chr8:74209946-74268696:-	SBC5_LUNG	0.01	0.83	0.054	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	CNTN1--LRRK2	3	4	CNTN1	1151	chr12:41086394:+	LRRK2	47092	chr12:40637352:+	ONLY_REF_SPLICE	YES	208	3	0.03	0.7	0.0324	0.0432	CNTN1->chr12:41086244-41466220:+,contactin_1,LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2	SBC5_LUNG	0.03	0.7	0.0756	TRUE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	1	1	0.0432	FALSE	344	821	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	1	1	0.0432	FALSE	344	821	44	306	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SBC5_LUNG	1	1	0.0432	FALSE	499	1288	110	792	0	FALSE	ACH-000670
SBC5_LUNG	PCBP1-AS1--AC016700.3	4	0	PCBP1-AS1	4300	chr2:70312679:-	AC016700.3	40860	chr2:70322191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	LOCAL_REARRANGEMENT:-:[5048],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,AC016700.3->chr2:70321026-70330352:-	SBC5_LUNG	1	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	2	7	CNTN1	1151	chr12:41086394:+	MUC19	111145	chr12:40935421:+	ONLY_REF_SPLICE	YES	208	5	0.04	0.64	0.0216	0.0755	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.04	0.64	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	2	7	CNTN1	1151	chr12:41086394:+	MUC19	116661	chr12:40940937:+	ONLY_REF_SPLICE	YES	208	9	0.04	0.5	0.0216	0.0755	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.04	0.5	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	ITGB8--AC005083.1	3	3	ITGB8	5451	chr7:20403345:+	AC005083.1	30897	chr7:20257879:+	ONLY_REF_SPLICE	YES	430	34	0.01	0.15	0.0324	0.0324	ITGB8->chr7:20370325-20455377:+,integrin_subunit_beta_8,AC005083.1->chr7:20257200-20261323:+	SBC5_LUNG	0.01	0.15	0.0648	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	MT-CO2--MT-CO1	3	3	MT-CO2	1245	chrM:7830:+	MT-CO1	5167	chrM:6386:+	INCL_NON_REF_SPLICE	YES	8	24755	0.43	0	0.0324	0.0324	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SBC5_LUNG	0	0.43	0.0648	FALSE	36	10	0	27	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	21549	500	0	0.01	0.0324	0.0324	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	0.01	0.0648	FALSE	231	204	14	283	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND6--MT-TE	3	3	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0324	0.0324	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SBC5_LUNG	0.86	1	0.0648	FALSE	499	1288	110	792	0	FALSE	ACH-000670
SBC5_LUNG	LINC00578--RP11-114M1.1	3	2	LINC00578	4542	chr3:177347343:+	RP11-114M1.1	12513	chr3:177405190:+	ONLY_REF_SPLICE	YES	32	9	0.14	0.36	0.0324	0.0216	NEIGHBORS_OVERLAP:+:+:[7623],LINC00578->chr3:177159709-177470093:+,long_intergenic_non-protein_coding_RNA_578,RP11-114M1.1->chr3:177401415-177409038:+	SBC5_LUNG	0.14	0.36	0.054	FALSE	0	1	0	2	0	FALSE	ACH-000670
SBC5_LUNG	ATXN2--USP48	3	1	ATXN2	29992	chr12:111893833:-	USP48	39557	chr1:22084276:-	ONLY_REF_SPLICE	YES	128	68	0.03	0.06	0.0324	0.0108	ATXN2->ataxin_2,chr12:111890018-112037480:-,USP48->chr1:22004791-22110099:-,ubiquitin_specific_peptidase_48	SBC5_LUNG	0.03	0.06	0.0432	TRUE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND3--MT-ATP8	3	1	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	90	10	0.04	0.29	0.0324	0.0108	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0.04	0.29	0.0432	FALSE	351	233	23	137	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1017	chrM:10776:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	1908	0	0	1	0.0324	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SBC5_LUNG	0	1	0.0432	FALSE	230	190	14	283	0	FALSE	ACH-000670
SBC5_LUNG	RP11-476K15.1--CTD-2015H3.2	3	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0324	0.0108	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	SBC5_LUNG	0.8	1	0.0432	FALSE	0	46	0	73	0	FALSE	ACH-000670
SBC5_LUNG	CNTN1--LRRK2	2	4	CNTN1	1151	chr12:41086394:+	LRRK2	44822	chr12:40631771:+	ONLY_REF_SPLICE	YES	208	0	0.03	1	0.0216	0.0432	CNTN1->chr12:41086244-41466220:+,contactin_1,LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2	SBC5_LUNG	0.03	1	0.0648	TRUE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	1	8	CNTN1	1151	chr12:41086394:+	MUC19	104739	chr12:40927958:+	ONLY_REF_SPLICE	YES	208	10	0.04	0.47	0.0108	0.0863	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.04	0.47	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	1	8	CNTN1	1151	chr12:41086394:+	MUC19	103608	chr12:40926827:+	ONLY_REF_SPLICE	YES	208	7	0.04	0.56	0.0108	0.0863	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.04	0.56	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	MT-CO2--MT-CO1	3	0	MT-CO2	1129	chrM:7714:+	MT-CO1	6186	chrM:7405:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SBC5_LUNG	1	1	0.0324	FALSE	36	10	0	27	0	FALSE	ACH-000670
SBC5_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SBC5_LUNG	1	1	0.0324	FALSE	344	821	44	306	0	FALSE	ACH-000670
SBC5_LUNG	SNHG8--SKI	3	0	SNHG8	1429	chr4:119200292:+	SKI	9424	chr1:2234417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	SBC5_LUNG	1	1	0.0324	TRUE	0	1	0	2	0	TRUE	ACH-000670
SBC5_LUNG	STAU2--RP11-434I12.2	2	4	STAU2	27314	chr8:74439926:-	RP11-434I12.2	36104	chr8:74257531:-	ONLY_REF_SPLICE	YES	655	0	0.01	1	0.0216	0.0432	NEIGHBORS[63908],STAU2->chr8:74332604-74659943:-,staufen_double-stranded_RNA_binding_protein_2,RP11-434I12.2->chr8:74209946-74268696:-	SBC5_LUNG	0.01	1	0.0648	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	TDG--LRRC53	2	4	TDG	1257	chr12:104359838:+	LRRC53	18645	chr1:74946652:-	ONLY_REF_SPLICE	YES	79	3	0.07	0.67	0.0216	0.0432	TDG->chr12:104359582-104382652:+,thymine_DNA_glycosylase,LRRC53->chr1:74935562-74978298:-,leucine_rich_repeat_containing_53	SBC5_LUNG	0.07	0.67	0.0648	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	1	7	CNTN1	1151	chr12:41086394:+	MUC19	115482	chr12:40939758:+	ONLY_REF_SPLICE	YES	208	17	0.04	0.32	0.0108	0.0755	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.04	0.32	0.0863	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	1	7	CNTN1	1151	chr12:41086394:+	MUC19	113315	chr12:40937591:+	ONLY_REF_SPLICE	YES	208	9	0.04	0.47	0.0108	0.0755	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.04	0.47	0.0863	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	7	0	0.53	1	0.0108	0.0755	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SBC5_LUNG	0.53	1	0.0863	FALSE	275	511	55	178	0	FALSE	ACH-000670
SBC5_LUNG	RPS6KB1--VMP1	1	7	RPS6KB1	7326	chr17:57992064:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	70	1453	0.1	0.01	0.0108	0.0755	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SBC5_LUNG	0.01	0.1	0.0863	FALSE	0	4	1	7	3	FALSE	ACH-000670
SBC5_LUNG	STAU2--RP11-434I12.2	2	3	STAU2	23792	chr8:74464247:-	RP11-434I12.2	38315	chr8:74234322:-	ONLY_REF_SPLICE	YES	766	0	0.01	1	0.0216	0.0324	NEIGHBORS[63908],STAU2->chr8:74332604-74659943:-,staufen_double-stranded_RNA_binding_protein_2,RP11-434I12.2->chr8:74209946-74268696:-	SBC5_LUNG	0.01	1	0.054	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	STAU2--RP11-434I12.2	2	3	STAU2	23792	chr8:74464247:-	RP11-434I12.2	36104	chr8:74257531:-	ONLY_REF_SPLICE	YES	766	0	0.01	1	0.0216	0.0324	NEIGHBORS[63908],STAU2->chr8:74332604-74659943:-,staufen_double-stranded_RNA_binding_protein_2,RP11-434I12.2->chr8:74209946-74268696:-	SBC5_LUNG	0.01	1	0.054	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	2	2	CNTN1	1151	chr12:41086394:+	MUC19	127638	chr12:40959435:+	ONLY_REF_SPLICE	YES	208	17	0.02	0.19	0.0216	0.0216	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.02	0.19	0.0432	TRUE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	2	2	CNTN1	1151	chr12:41086394:+	MUC19	125108	chr12:40955141:+	ONLY_REF_SPLICE	YES	208	12	0.02	0.25	0.0216	0.0216	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.02	0.25	0.0432	TRUE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	PACS1--BBS1	2	2	PACS1	1480	chr11:65838313:+	BBS1	32931	chr11:66281877:+	ONLY_REF_SPLICE	YES	6	13	0.4	0.24	0.0216	0.0216	PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1,BBS1->Bardet-Biedl_syndrome_1,chr11:66278077-66301098:+	SBC5_LUNG	0.24	0.4	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	RP11-120D5.1--MID1	1	6	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	169	0.78	0.04	0.0108	0.0647	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SBC5_LUNG	0.04	0.78	0.0755	FALSE	2	31	0	60	0	FALSE	ACH-000670
SBC5_LUNG	RP11-120D5.1--MID1	2	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	12	169	0.25	0.02	0.0216	0.0216	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SBC5_LUNG	0.02	0.25	0.0432	FALSE	0	48	1	163	0	FALSE	ACH-000670
SBC5_LUNG	CAPNS1--TBCB	2	1	CAPNS1	4167	chr19:36633643:+	TBCB	19301	chr19:36616353:+	ONLY_REF_SPLICE	YES	552	216	0.01	0.01	0.0216	0.0108	LOCAL_REARRANGEMENT:+:[13628],CAPNS1->calpain_small_subunit_1,chr19:36630477-36641255:+,TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B	SBC5_LUNG	0.01	0.01	0.0324	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	CAPNS1--TBCB	1	5	CAPNS1	4554	chr19:36634030:+	TBCB	19301	chr19:36616353:+	ONLY_REF_SPLICE	NO	814	216	0.01	0.03	0.0108	0.054	LOCAL_REARRANGEMENT:+:[13628],CAPNS1->calpain_small_subunit_1,chr19:36630477-36641255:+,TBCB->chr19:36605191-36616849:+,tubulin_folding_cofactor_B	SBC5_LUNG	0.01	0.03	0.0648	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	PRSS12--SEC24D	2	1	PRSS12	17235	chr4:119203986:-	SEC24D	30962	chr4:119736881:-	ONLY_REF_SPLICE	YES	1470	94	0	0.03	0.0216	0.0108	PRSS12->chr4:119201193-119274158:-,protease,_serine_12,SEC24D->SEC24_homolog_D,_COPII_coat_complex_component,chr4:119643978-119759838:-	SBC5_LUNG	0	0.03	0.0324	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	RP11-476K15.1--CTD-2015H3.2	2	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0216	0.0108	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	SBC5_LUNG	0.75	1	0.0324	FALSE	0	46	0	73	0	FALSE	ACH-000670
SBC5_LUNG	TDG--RP11-439H8.4	2	1	TDG	1257	chr12:104359838:+	RP11-439H8.4	17549	chr1:74834803:-	ONLY_REF_SPLICE	YES	79	0	0.04	1	0.0216	0.0108	TDG->chr12:104359582-104382652:+,thymine_DNA_glycosylase,RP11-439H8.4->chr1:74807263-74844486:-	SBC5_LUNG	0.04	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	CNTN1--LRRK2	1	4	CNTN1	1151	chr12:41086394:+	LRRK2	61484	chr12:40688647:+	ONLY_REF_SPLICE	NO	208	6	0.02	0.45	0.0108	0.0432	CNTN1->chr12:41086244-41466220:+,contactin_1,LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2	SBC5_LUNG	0.02	0.45	0.054	TRUE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	CNTN1--LRRK2	1	4	CNTN1	1151	chr12:41086394:+	LRRK2	59176	chr12:40681153:+	ONLY_REF_SPLICE	YES	208	2	0.02	0.71	0.0108	0.0432	CNTN1->chr12:41086244-41466220:+,contactin_1,LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2	SBC5_LUNG	0.02	0.71	0.054	TRUE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	OXSR1--MYD88	2	0	OXSR1	4080	chr3:38232330:+	MYD88	28028	chr3:38181355:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LOCAL_REARRANGEMENT:+:[22067],OXSR1->chr3:38206580-38296979:+,oxidative_stress_responsive_1,MYD88->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:38179969-38184513:+,myeloid_differentiation_primary_response_88	SBC5_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	PCM1--DRG2	2	0	PCM1	10959	chr8:17797370:+	DRG2	56646	chr17:18001584:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1,DRG2->chr17:17991200-18011285:+,developmentally_regulated_GTP_binding_protein_2	SBC5_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	TMEM223--SLC3A2	2	0	TMEM223	1343	chr11:62559151:-	SLC3A2	16887	chr11:62650380:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LOCAL_INVERSION:-:+:[64025],TMEM223->chr11:62539101-62559493:-,transmembrane_protein_223,SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2	SBC5_LUNG	1	1	0.0216	TRUE	0	1	0	3	0	TRUE	ACH-000670
SBC5_LUNG	ZRANB2--DNM3OS	2	0	ZRANB2	7616	chr1:71534959:-	DNM3OS	16197	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ZRANB2->chr1:71528974-71546980:-,zinc_finger_RANBP2-type_containing_2,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	SBC5_LUNG	1	1	0.0216	TRUE	0	2	0	1	1	TRUE	ACH-000670
SBC5_LUNG	AUNIP--STMN1	1	3	AUNIP	1133	chr1:26185771:-	STMN1	11606	chr1:26231229:-	ONLY_REF_SPLICE	YES	16	32	0.2	0.11	0.0108	0.0324	LOCAL_REARRANGEMENT:-:[24769],AUNIP->aurora_kinase_A_and_ninein_interacting_protein,chr1:26158414-26185903:-,STMN1->chr1:26210672-26233482:-,stathmin_1	SBC5_LUNG	0.11	0.2	0.0432	TRUE	0	1	0	1	1	TRUE	ACH-000670
SBC5_LUNG	CNTN1--LRRK2	1	3	CNTN1	1151	chr12:41086394:+	LRRK2	84908	chr12:40740555:+	ONLY_REF_SPLICE	YES	208	3	0.02	0.57	0.0108	0.0324	CNTN1->chr12:41086244-41466220:+,contactin_1,LRRK2->chr12:40590546-40763087:+,leucine-rich_repeat_kinase_2	SBC5_LUNG	0.02	0.57	0.0432	TRUE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	1	3	CNTN1	1151	chr12:41086394:+	MUC19	124773	chr12:40954806:+	ONLY_REF_SPLICE	NO	208	23	0.02	0.15	0.0108	0.0324	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.02	0.15	0.0432	TRUE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	1	3	CNTN1	1151	chr12:41086394:+	MUC19	124305	chr12:40954338:+	ONLY_REF_SPLICE	NO	208	13	0.02	0.24	0.0108	0.0324	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.02	0.24	0.0432	TRUE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	FAM172A--BACH2	1	3	FAM172A	14010	chr5:93073518:-	BACH2	33632	chr6:90648069:-	ONLY_REF_SPLICE	YES	6	1	0.4	0.8	0.0108	0.0324	FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,BACH2->BTB_domain_and_CNC_homolog_2,Oncogene{Bushman},chr6:90636248-91006627:-	SBC5_LUNG	0.4	0.8	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	PRSS12--SEC24D	1	2	PRSS12	17235	chr4:119203986:-	SEC24D	25833	chr4:119754892:-	ONLY_REF_SPLICE	YES	1470	40	0	0.07	0.0108	0.0216	PRSS12->chr4:119201193-119274158:-,protease,_serine_12,SEC24D->SEC24_homolog_D,_COPII_coat_complex_component,chr4:119643978-119759838:-	SBC5_LUNG	0	0.07	0.0324	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	SAMD8--ADK	1	2	SAMD8	2451	chr10:76871536:+	ADK	28066	chr10:76349040:+	ONLY_REF_SPLICE	YES	34	141	0.08	0.02	0.0108	0.0216	SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,ADK->adenosine_kinase,chr10:75910960-76469061:+	SBC5_LUNG	0.02	0.08	0.0324	TRUE	0	0	0	2	0	FALSE	ACH-000670
SBC5_LUNG	TCEANC--RP11-142G7.2	1	2	TCEANC	3409	chrX:13677887:+	RP11-142G7.2	23415	chrX:13391636:+	ONLY_REF_SPLICE	YES	6	15	0.33	0.17	0.0108	0.0216	TCEANC->chrX:13671225-13700083:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing,RP11-142G7.2->chrX:13353360-13391753:+	SBC5_LUNG	0.17	0.33	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	TCEANC--RP11-142G7.2	1	2	TCEANC	4501	chrX:13679241:+	RP11-142G7.2	23415	chrX:13391636:+	ONLY_REF_SPLICE	NO	7	15	0.3	0.17	0.0108	0.0216	TCEANC->chrX:13671225-13700083:+,transcription_elongation_factor_A_N-terminal_and_central_domain_containing,RP11-142G7.2->chrX:13353360-13391753:+	SBC5_LUNG	0.17	0.3	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	ABI2--CYP20A1	1	1	ABI2	1413	chr2:204193354:+	CYP20A1	51297	chr2:204143296:+	ONLY_REF_SPLICE	NO	180	46	0.01	0.04	0.0108	0.0108	LOCAL_REARRANGEMENT:+:[29933],ABI2->abl-interactor_2,chr2:204192942-204312446:+,CYP20A1->chr2:204103663-204163009:+,cytochrome_P450_family_20_subfamily_A_member_1	SBC5_LUNG	0.01	0.04	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	ATF2--CHN1	1	1	ATF2	17534	chr2:175945388:-	CHN1	26246	chr2:175816930:-	ONLY_REF_SPLICE	NO	77	8	0.03	0.2	0.0108	0.0108	NEIGHBORS[66881],ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-,CHN1->Oncogene{Bushman},chimerin_1,chr2:175664091-175870097:-	SBC5_LUNG	0.03	0.2	0.0216	FALSE	0	0	0	7	0	FALSE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	1	1	CNTN1	1151	chr12:41086394:+	MUC19	128131	chr12:40959928:+	ONLY_REF_SPLICE	NO	208	29	0.01	0.06	0.0108	0.0108	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.01	0.06	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	CNTN1--MUC19	1	1	CNTN1	1151	chr12:41086394:+	MUC19	129169	chr12:40961400:+	ONLY_REF_SPLICE	YES	208	33	0.01	0.06	0.0108	0.0108	CNTN1->chr12:41086244-41466220:+,contactin_1,MUC19->chr12:40787197-40964632:+,mucin_19,_oligomeric	SBC5_LUNG	0.01	0.06	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	DNAH14--GOLGA3	1	1	DNAH14	17648	chr1:225195246:+	GOLGA3	119980	chr12:133375063:-	ONLY_REF_SPLICE	YES	6	68	0.25	0.03	0.0108	0.0108	DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14,GOLGA3->chr12:133345495-133405444:-,golgin_A3	SBC5_LUNG	0.03	0.25	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	DPYD--FRRS1	1	1	DPYD	2277	chr1:98348820:-	FRRS1	41866	chr1:100203824:-	ONLY_REF_SPLICE	NO	168	50	0.01	0.04	0.0108	0.0108	DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,FRRS1->chr1:100174259-100232187:-,ferric_chelate_reductase_1	SBC5_LUNG	0.01	0.04	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	DPYD--RP5-1070A16.1	1	1	DPYD	2277	chr1:98348820:-	RP5-1070A16.1	35644	chr1:98715002:+	ONLY_REF_SPLICE	YES	168	0	0.01	1	0.0108	0.0108	DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,RP5-1070A16.1->chr1:98676303-98738214:+	SBC5_LUNG	0.01	1	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	HN1--RP11-456D7.1	1	1	HN1	7347	chr17:73142761:-	RP11-456D7.1	14779	chr17:46281354:+	ONLY_REF_SPLICE	NO	563	1	0	0.67	0.0108	0.0108	HN1->chr17:73131343-73164376:-,hematological_and_neurological_expressed_1,RP11-456D7.1->chr17:46263300-46281891:+	SBC5_LUNG	0	0.67	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	LINC00478--USP25	1	1	LINC00478	1877	chr21:17443718:+	USP25	26781	chr21:17135210:+	ONLY_REF_SPLICE	NO	75	0	0.03	1	0.0108	0.0108	LINC00478->chr21:17442842-17999716:+,USP25->chr21:17102344-17252377:+,ubiquitin_specific_peptidase_25	SBC5_LUNG	0.03	1	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	LPHN3--SUCLA2	1	1	LPHN3	13509	chr4:62679607:+	SUCLA2	51025	chr13:48571158:-	ONLY_REF_SPLICE	NO	2	67	0.5	0.03	0.0108	0.0108	LPHN3->chr4:62066976-62944053:+,SUCLA2->chr13:48510622-48612125:-,succinate-CoA_ligase_ADP-forming_beta_subunit	SBC5_LUNG	0.03	0.5	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	LPHN3--SUCLA2	1	1	LPHN3	13509	chr4:62679607:+	SUCLA2	53303	chr13:48563116:-	ONLY_REF_SPLICE	NO	2	54	0.5	0.04	0.0108	0.0108	LPHN3->chr4:62066976-62944053:+,SUCLA2->chr13:48510622-48612125:-,succinate-CoA_ligase_ADP-forming_beta_subunit	SBC5_LUNG	0.04	0.5	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	MET--CAV1	1	1	MET	4452	chr7:116340338:+	CAV1	33564	chr7:116199000:+	ONLY_REF_SPLICE	YES	669	418	0	0	0.0108	0.0108	{Klijn_CCL:Head-Neck=1},MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	SBC5_LUNG	0	0	0.0216	FALSE	0	1	0	3	1	FALSE	ACH-000670
SBC5_LUNG	MET--CAV1	1	1	MET	6154	chr7:116364901:+	CAV1	33564	chr7:116199000:+	ONLY_REF_SPLICE	YES	725	418	0	0	0.0108	0.0108	{Klijn_CCL:Head-Neck=1},MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	SBC5_LUNG	0	0	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	NCOR2--UBC	1	1	NCOR2	2329	chr12:125020111:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	4	25	0.33	0.07	0.0108	0.0108	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SBC5_LUNG	0.07	0.33	0.0216	TRUE	48	117	12	14	0	FALSE	ACH-000670
SBC5_LUNG	PDE4B--FOXP2	1	1	PDE4B	5807	chr1:66458825:+	FOXP2	50104	chr7:114268595:+	ONLY_REF_SPLICE	YES	20	0	0.09	1	0.0108	0.0108	PDE4B->chr1:66258197-66840259:+,phosphodiesterase_4B,FOXP2->chr7:113726382-114333827:+,forkhead_box_P2	SBC5_LUNG	0.09	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000670
SBC5_LUNG	RARB--AC133680.1	1	1	RARB	1244	chr3:25216066:+	AC133680.1	22874	chr3:25215610:+	ONLY_REF_SPLICE	YES	30	8	0.06	0.2	0.0108	0.0108	LOCAL_REARRANGEMENT:+:[27],RARB->Oncogene{Bushman},chr3:25215823-25639423:+,retinoic_acid_receptor_beta,AC133680.1->chr3:24729410-25215796:+	SBC5_LUNG	0.06	0.2	0.0216	TRUE	0	1	0	2	1	TRUE	ACH-000670
SBC5_LUNG	RNF126--BSG	1	1	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	18	821	0.1	0	0.0108	0.0108	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	SBC5_LUNG	0	0.1	0.0216	FALSE	0	2	0	12	0	FALSE	ACH-000670
SBC5_LUNG	RP11-108K3.1--RP11-108K3.2	1	1	RP11-108K3.1	1194	chr15:51329878:+	RP11-108K3.2	8519	chr15:51613806:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0108	0.0108	NEIGHBORS[21929],RP11-108K3.1->chr15:51329685-51586109:+,RP11-108K3.2->chr15:51608038-51614193:+	SBC5_LUNG	1	1	0.0216	FALSE	0	5	0	3	0	FALSE	ACH-000670
SBC5_LUNG	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0108	0.0108	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SBC5_LUNG	1	1	0.0216	FALSE	416	2512	207	587	0	FALSE	ACH-000670
SBC5_LUNG	STAU2--RP11-434I12.2	1	1	STAU2	27314	chr8:74439926:-	RP11-434I12.2	44349	chr8:74212667:-	ONLY_REF_SPLICE	YES	655	0	0	1	0.0108	0.0108	NEIGHBORS[63908],STAU2->chr8:74332604-74659943:-,staufen_double-stranded_RNA_binding_protein_2,RP11-434I12.2->chr8:74209946-74268696:-	SBC5_LUNG	0	1	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000670
SBC5_LUNG	VARS--HNRNPA1	1	1	VARS	6974	chr6:31752171:-	HNRNPA1	20470	chr12:54677596:+	ONLY_REF_SPLICE	YES	358	2826	0.01	0	0.0108	0.0108	VARS->chr6:31745295-31763730:-,valyl-tRNA_synthetase,HNRNPA1->chr12:54673977-54680872:+,heterogeneous_nuclear_ribonucleoprotein_A1	SBC5_LUNG	0	0.01	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000670
EBC1_LUNG	MYO5C--SHC4	440	320	MYO5C	1189	chr15:52587807:-	SHC4	53321	chr15:49217146:-	ONLY_REF_SPLICE	YES	27	0	0.97	1	3.9296	2.8579	{Klijn_CCL:Lung=1},MYO5C->chr15:52484519-52587995:-,myosin_VC,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	EBC1_LUNG	0.97	1	6.7875	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	TIMM23B--LINC00843	145	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.295	0.1875	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EBC1_LUNG	1	1	1.4825	TRUE	508	994	45	981	0	FALSE	ACH-000563
EBC1_LUNG	CHMP1A--FANCA	110	22	CHMP1A	1264	chr16:89723990:-	FANCA	40959	chr16:89818630:-	ONLY_REF_SPLICE	YES	127	46	0.51	0.74	0.9824	0.1965	LOCAL_REARRANGEMENT:-:[79704],CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-,FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-	EBC1_LUNG	0.51	0.74	1.1789	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	CENPM--PACSIN2	109	19	CENPM	4336	chr22:42339614:-	PACSIN2	16815	chr22:43308163:-	ONLY_REF_SPLICE	YES	331	128	0.28	0.5	0.9735	0.1697	CENPM->centromere_protein_M,chr22:42334725-42343168:-,PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2	EBC1_LUNG	0.28	0.5	1.1432	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	FANCA--CDK10	87	59	FANCA	29280	chr16:89824985:-	CDK10	48667	chr16:89755660:+	ONLY_REF_SPLICE	YES	38	73	0.79	0.67	0.777	0.5269	LOCAL_INVERSION:-:+:[41185],FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-,CDK10->chr16:89747145-89762772:+,cyclin-dependent_kinase_10	EBC1_LUNG	0.67	0.79	1.3039	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	B9D1--CD82	88	29	B9D1	11860	chr17:19247103:-	CD82	27328	chr11:44621708:+	ONLY_REF_SPLICE	YES	66	72	0.64	0.62	0.7859	0.259	B9D1->B9_protein_domain_1,chr17:19240867-19281495:-,CD82->CD82_molecule,Oncogene{Bushman},chr11:44585977-44641913:+	EBC1_LUNG	0.62	0.64	1.0449	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	TIMM23--RP11-464F9.1	91	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	219	2	0.3	0.98	0.8127	0.0089	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EBC1_LUNG	0.3	0.98	0.8216	TRUE	519	3926	326	965	0	FALSE	ACH-000563
EBC1_LUNG	MRPS14--TNR	83	2	MRPS14	1062	chr1:174992500:-	TNR	13828	chr1:175375913:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.7413	0.0179	MRPS14->chr1:174979925-174992561:-,mitochondrial_ribosomal_protein_S14,TNR->Oncogene{Bushman},chr1:175284330-175712906:-,tenascin_R	EBC1_LUNG	0.99	1	0.7592	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	ZNF106--RP11-138E16.1	67	14	ZNF106	5542	chr15:42749156:-	RP11-138E16.1	37274	chr15:49239382:+	ONLY_REF_SPLICE	YES	31	0	0.72	1	0.5984	0.125	ZNF106->chr15:42705021-42783321:-,zinc_finger_protein_106,RP11-138E16.1->chr15:49230433-49240228:+	EBC1_LUNG	0.72	1	0.7234	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	TANC1--PKP4	65	17	TANC1	3335	chr2:159922483:+	PKP4	51090	chr2:159488265:+	ONLY_REF_SPLICE	YES	8	56	0.91	0.59	0.5805	0.1518	YOSHIHARA_TCGA_num_samples[BRCA:1|OV:1],{Klijn_CCL:Lung=1},TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,PKP4->chr2:159313476-159539391:+,plakophilin_4	EBC1_LUNG	0.59	0.91	0.7323	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MGA--GABRB3	60	16	MGA	13640	chr15:42005694:+	GABRB3	55370	chr15:26866681:-	ONLY_REF_SPLICE	YES	32	18	0.7	0.81	0.5359	0.1429	MGA->MGA,_MAX_dimerization_protein,chr15:41913422-42062141:+,GABRB3->chr15:26788693-27184686:-,gamma-aminobutyric_acid_type_A_receptor_beta3_subunit	EBC1_LUNG	0.7	0.81	0.6788	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	FANCA--CDK10	55	35	FANCA	29280	chr16:89824985:-	CDK10	49968	chr16:89756961:+	ONLY_REF_SPLICE	YES	38	125	0.7	0.42	0.4912	0.3126	LOCAL_INVERSION:-:+:[41185],FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-,CDK10->chr16:89747145-89762772:+,cyclin-dependent_kinase_10	EBC1_LUNG	0.42	0.7	0.8038	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	ZNF227--GAB2	51	34	ZNF227	3044	chr19:44717397:+	GAB2	19865	chr11:77991947:-	ONLY_REF_SPLICE	YES	27	1	0.76	0.99	0.4555	0.3037	ZNF227->chr19:44711700-44741421:+,zinc_finger_protein_227,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	EBC1_LUNG	0.76	0.99	0.7592	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	ZNF654--HMGB2	54	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4823	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	EBC1_LUNG	1	1	0.4823	TRUE	0	0	0	518	0	FALSE	ACH-000563
EBC1_LUNG	MYO5C--SHC4	9	170	MYO5C	1189	chr15:52587807:-	SHC4	54392	chr15:49183008:-	ONLY_REF_SPLICE	YES	27	3	0.87	0.98	0.0804	1.5183	{Klijn_CCL:Lung=1},MYO5C->chr15:52484519-52587995:-,myosin_VC,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	EBC1_LUNG	0.87	0.98	1.5987	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	RP5-940J5.9--CAV1	40	1	RP5-940J5.9	1532	chr12:6647005:-	CAV1	7889	chr7:116199077:+	INCL_NON_REF_SPLICE	YES	0	5849	1	0.01	0.3572	0.0089	RP5-940J5.9->chr12:6646960-6647536:-,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	EBC1_LUNG	0.01	1	0.3661	TRUE	0	0	0	2	0	FALSE	ACH-000563
EBC1_LUNG	ANTXR2--TNFSF10	32	18	ANTXR2	20257	chr4:80905973:-	TNFSF10	37955	chr3:172232788:-	ONLY_REF_SPLICE	YES	37	11	0.57	0.82	0.2858	0.1608	ANTXR2->anthrax_toxin_receptor_2,chr4:80822303-81046608:-,TNFSF10->Oncogene{Bushman},chr3:172223298-172241297:-,tumor_necrosis_factor_superfamily_member_10	EBC1_LUNG	0.57	0.82	0.4466	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	C18orf25--GREB1L	30	7	C18orf25	5870	chr18:43833786:+	GREB1L	16349	chr18:18945988:+	ONLY_REF_SPLICE	YES	20	1	0.65	0.97	0.2679	0.0625	C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,GREB1L->chr18:18822203-19105378:+,growth_regulation_by_estrogen_in_breast_cancer-like	EBC1_LUNG	0.65	0.97	0.3304	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MYO5C--SHC4	2	108	MYO5C	1189	chr15:52587807:-	SHC4	55456	chr15:49176564:-	ONLY_REF_SPLICE	YES	27	75	0.8	0.59	0.0179	0.9645	{Klijn_CCL:Lung=1},MYO5C->chr15:52484519-52587995:-,myosin_VC,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	EBC1_LUNG	0.59	0.8	0.9824	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	RIPK1--RP1-90J20.11	25	9	RIPK1	5617	chr6:3081350:+	RP1-90J20.11	20985	chr6:3026987:+	INCL_NON_REF_SPLICE	YES	48	6	0.41	0.85	0.2233	0.0804	LOCAL_REARRANGEMENT:+:[36566],RIPK1->chr6:3064225-3115421:+,receptor_interacting_serine/threonine_kinase_1,RP1-90J20.11->chr6:3025025-3027659:+	EBC1_LUNG	0.41	0.85	0.3037	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	C15orf57--CBX3	17	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	35	65	0.44	0.3	0.1518	0.0982	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EBC1_LUNG	0.3	0.44	0.25	TRUE	267	562	48	632	0	FALSE	ACH-000563
EBC1_LUNG	ANTXR2--TNFSF10	13	24	ANTXR2	20257	chr4:80905973:-	TNFSF10	34643	chr3:172241243:-	INCL_NON_REF_SPLICE	YES	37	0	0.5	1	0.1161	0.2143	ANTXR2->anthrax_toxin_receptor_2,chr4:80822303-81046608:-,TNFSF10->Oncogene{Bushman},chr3:172223298-172241297:-,tumor_necrosis_factor_superfamily_member_10	EBC1_LUNG	0.5	1	0.3304	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	CENPM--PACSIN2	16	12	CENPM	2940	chr22:42341229:-	PACSIN2	16815	chr22:43308163:-	ONLY_REF_SPLICE	YES	368	128	0.07	0.18	0.1429	0.1072	CENPM->centromere_protein_M,chr22:42334725-42343168:-,PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2	EBC1_LUNG	0.07	0.18	0.2501	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	OTUD7A--CKMT1B	17	7	OTUD7A	1283	chr15:32162710:-	CKMT1B	23606	chr15:43885280:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1518	0.0625	OTUD7A->OTU_deubiquitinase_7A,chr15:31775329-32162992:-,CKMT1B->chr15:43885252-43897099:+,creatine_kinase,_mitochondrial_1B	EBC1_LUNG	1	1	0.2143	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	RP11-114H23.1--RP11-114H23.2	16	8	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.92	1	0.1429	0.0714	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	EBC1_LUNG	0.92	1	0.2143	FALSE	81	155	12	160	0	FALSE	ACH-000563
EBC1_LUNG	BCL2L13--EP300	16	7	BCL2L13	7470	chr22:18171908:+	EP300	27924	chr22:41525894:+	ONLY_REF_SPLICE	YES	2	30	0.92	0.43	0.1429	0.0625	BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	EBC1_LUNG	0.43	0.92	0.2054	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	RP11-96H19.1--RP11-446N19.1	15	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.134	0.0893	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EBC1_LUNG	0.96	1	0.2233	FALSE	407	2205	196	549	0	FALSE	ACH-000563
EBC1_LUNG	BCL2L13--EP300	14	10	BCL2L13	9983	chr22:18178976:+	EP300	27924	chr22:41525894:+	ONLY_REF_SPLICE	YES	2	30	0.92	0.44	0.125	0.0893	BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	EBC1_LUNG	0.44	0.92	0.2143	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	RP1-283E3.4--PRKCZ	13	13	RP1-283E3.4	1252	chr1:1656202:+	PRKCZ	20383	chr1:2029786:+	ONLY_REF_SPLICE	YES	0	11	1	0.7	0.1161	0.1161	RP1-283E3.4->chr1:1655951-1668690:+,PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta	EBC1_LUNG	0.7	1	0.2322	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MGA--GABRB3	12	16	MGA	13640	chr15:42005694:+	GABRB3	50745	chr15:26887675:-	ONLY_REF_SPLICE	YES	32	0	0.47	1	0.1072	0.1429	MGA->MGA,_MAX_dimerization_protein,chr15:41913422-42062141:+,GABRB3->chr15:26788693-27184686:-,gamma-aminobutyric_acid_type_A_receptor_beta3_subunit	EBC1_LUNG	0.47	1	0.2501	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	ZNF227--GAB2	7	34	ZNF227	3044	chr19:44717397:+	GAB2	16579	chr11:78075149:-	ONLY_REF_SPLICE	YES	27	1	0.6	0.98	0.0625	0.3037	ZNF227->chr19:44711700-44741421:+,zinc_finger_protein_227,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	EBC1_LUNG	0.6	0.98	0.3662	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MT-TA--MT-TC	15	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.134	0.0089	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EBC1_LUNG	1	1	0.1429	FALSE	462	80	0	856	0	FALSE	ACH-000563
EBC1_LUNG	ANTXR2--TNFSF10	12	12	ANTXR2	19212	chr4:80929675:-	TNFSF10	37955	chr3:172232788:-	ONLY_REF_SPLICE	YES	35	11	0.41	0.69	0.1072	0.1072	ANTXR2->anthrax_toxin_receptor_2,chr4:80822303-81046608:-,TNFSF10->Oncogene{Bushman},chr3:172223298-172241297:-,tumor_necrosis_factor_superfamily_member_10	EBC1_LUNG	0.41	0.69	0.2144	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	ZDHHC9--RP4-537K23.4	13	7	ZDHHC9	2953	chrX:128975755:-	RP4-537K23.4	19015	chrX:129063871:-	ONLY_REF_SPLICE	YES	131	0	0.13	1	0.1161	0.0625	LOCAL_REARRANGEMENT:-:[25155],ZDHHC9->chrX:128937264-128977885:-,zinc_finger_DHHC-type_containing_9,RP4-537K23.4->chrX:129003040-129091504:-	EBC1_LUNG	0.13	1	0.1786	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	CHMP1A--FANCA	12	10	CHMP1A	1264	chr16:89723990:-	FANCA	42044	chr16:89816310:-	ONLY_REF_SPLICE	YES	127	38	0.15	0.37	0.1072	0.0893	LOCAL_REARRANGEMENT:-:[79704],CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-,FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-	EBC1_LUNG	0.15	0.37	0.1965	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	C15orf57--CBX3	13	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	34	71	0.35	0.2	0.1161	0.0447	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EBC1_LUNG	0.2	0.35	0.1608	TRUE	267	562	48	632	0	FALSE	ACH-000563
EBC1_LUNG	RP11-96H19.1--RP11-446N19.1	13	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1161	0.0447	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EBC1_LUNG	0.95	1	0.1608	FALSE	515	4851	409	746	0	FALSE	ACH-000563
EBC1_LUNG	HSP90AB1--MT-RNR2	9	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3289	0	0	1	0.0804	0.0179	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EBC1_LUNG	0	1	0.0983	FALSE	13	9	0	364	0	FALSE	ACH-000563
EBC1_LUNG	B9D1--CD82	5	15	B9D1	10469	chr17:19250582:-	CD82	27328	chr11:44621708:+	ONLY_REF_SPLICE	YES	73	72	0.22	0.22	0.0447	0.134	B9D1->B9_protein_domain_1,chr17:19240867-19281495:-,CD82->CD82_molecule,Oncogene{Bushman},chr11:44585977-44641913:+	EBC1_LUNG	0.22	0.22	0.1787	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	FANCA--CDK10	6	10	FANCA	28151	chr16:89828357:-	CDK10	49968	chr16:89756961:+	ONLY_REF_SPLICE	YES	45	125	0.26	0.11	0.0536	0.0893	LOCAL_INVERSION:-:+:[41185],FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-,CDK10->chr16:89747145-89762772:+,cyclin-dependent_kinase_10	EBC1_LUNG	0.11	0.26	0.1429	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MYO5C--SHC4	2	25	MYO5C	1189	chr15:52587807:-	SHC4	59083	chr15:49164339:-	ONLY_REF_SPLICE	YES	27	170	0.5	0.14	0.0179	0.2233	{Klijn_CCL:Lung=1},MYO5C->chr15:52484519-52587995:-,myosin_VC,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	EBC1_LUNG	0.14	0.5	0.2412	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MGA--GABRB3	4	16	MGA	13640	chr15:42005694:+	GABRB3	53043	chr15:26870681:-	ONLY_REF_SPLICE	YES	32	17	0.38	0.54	0.0357	0.1429	MGA->MGA,_MAX_dimerization_protein,chr15:41913422-42062141:+,GABRB3->chr15:26788693-27184686:-,gamma-aminobutyric_acid_type_A_receptor_beta3_subunit	EBC1_LUNG	0.38	0.54	0.1786	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	RP11-114H23.1--RP11-114H23.2	6	7	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.0536	0.0625	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	EBC1_LUNG	0.87	1	0.1161	FALSE	81	155	12	160	0	FALSE	ACH-000563
EBC1_LUNG	RIPK1--RP1-90J20.11	5	9	RIPK1	6846	chr6:3083547:+	RP1-90J20.11	20985	chr6:3026987:+	INCL_NON_REF_SPLICE	YES	34	6	0.29	0.7	0.0447	0.0804	LOCAL_REARRANGEMENT:+:[36566],RIPK1->chr6:3064225-3115421:+,receptor_interacting_serine/threonine_kinase_1,RP1-90J20.11->chr6:3025025-3027659:+	EBC1_LUNG	0.29	0.7	0.1251	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MRPS14--TNR	6	3	MRPS14	1154	chr1:174992408:-	TNR	13828	chr1:175375913:-	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.0536	0.0268	MRPS14->chr1:174979925-174992561:-,mitochondrial_ribosomal_protein_S14,TNR->Oncogene{Bushman},chr1:175284330-175712906:-,tenascin_R	EBC1_LUNG	0.6	1	0.0804	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	RP11-96H19.1--RP11-446N19.1	3	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0268	0.1072	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EBC1_LUNG	1	1	0.134	FALSE	192	492	57	212	0	FALSE	ACH-000563
EBC1_LUNG	RP11-123O10.4--GRIP1	5	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	EBC1_LUNG	1	1	0.0447	FALSE	416	2512	207	587	0	FALSE	ACH-000563
EBC1_LUNG	WWOX--DBNDD1	5	0	WWOX	6262	chr16:78149051:+	DBNDD1	36599	chr16:90075838:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,DBNDD1->chr16:90071273-90086536:-,dysbindin_(dystrobrevin_binding_protein_1)_domain_containing_1	EBC1_LUNG	1	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	BCL2L13--EP300	4	3	BCL2L13	5215	chr22:18166087:+	EP300	27924	chr22:41525894:+	ONLY_REF_SPLICE	YES	0	30	1	0.19	0.0357	0.0268	BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	EBC1_LUNG	0.19	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	KDM4B--CYP4F22	4	3	KDM4B	28507	chr19:5144913:+	CYP4F22	36837	chr19:15634504:+	ONLY_REF_SPLICE	YES	8	0	0.47	1	0.0357	0.0268	KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,CYP4F22->chr19:15619304-15663128:+,cytochrome_P450_family_4_subfamily_F_member_22	EBC1_LUNG	0.47	1	0.0625	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	EEF1A2--GAPDH	4	2	EEF1A2	3438	chr20:62127261:-	GAPDH	15278	chr12:6646305:+	INCL_NON_REF_SPLICE	YES	818	11108	0.01	0	0.0357	0.0179	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,EEF1A2->Oncogene{Bushman},chr20:62119366-62130505:-,eukaryotic_translation_elongation_factor_1_alpha_2,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	EBC1_LUNG	0	0.01	0.0536	FALSE	0	0	0	2	0	FALSE	ACH-000563
EBC1_LUNG	C18orf25--GREB1L	4	1	C18orf25	3563	chr18:43796561:+	GREB1L	17459	chr18:18963471:+	ONLY_REF_SPLICE	YES	34	2	0.13	0.71	0.0357	0.0089	C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,GREB1L->chr18:18822203-19105378:+,growth_regulation_by_estrogen_in_breast_cancer-like	EBC1_LUNG	0.13	0.71	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MT-TA--MT-TC	4	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0357	0.0089	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EBC1_LUNG	1	1	0.0446	FALSE	462	80	0	856	0	FALSE	ACH-000563
EBC1_LUNG	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0.0447	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EBC1_LUNG	1	1	0.0715	FALSE	467	2173	244	435	0	FALSE	ACH-000563
EBC1_LUNG	RPLP1--TAGLN2	4	1	RPLP1	1170	chr15:69745292:+	TAGLN2	12429	chr1:159888329:-	INCL_NON_REF_SPLICE	YES	2903	1104	0	0	0.0357	0.0089	RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,TAGLN2->chr1:159887897-159895522:-,transgelin_2	EBC1_LUNG	0	0	0.0446	FALSE	0	0	0	4	0	FALSE	ACH-000563
EBC1_LUNG	B9D1--CD82	1	12	B9D1	11860	chr17:19247103:-	CD82	29031	chr11:44626608:+	ONLY_REF_SPLICE	YES	66	51	0.16	0.2	0.0089	0.1072	B9D1->B9_protein_domain_1,chr17:19240867-19281495:-,CD82->CD82_molecule,Oncogene{Bushman},chr11:44585977-44641913:+	EBC1_LUNG	0.16	0.2	0.1161	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	CHMP1A--FANCA	3	2	CHMP1A	1264	chr16:89723990:-	FANCA	43179	chr16:89815175:-	ONLY_REF_SPLICE	YES	127	54	0.04	0.08	0.0268	0.0179	LOCAL_REARRANGEMENT:-:[79704],CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-,FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-	EBC1_LUNG	0.04	0.08	0.0447	TRUE	0	0	0	1	0	FALSE	ACH-000563
EBC1_LUNG	HSP90AB1--MT-RNR2	3	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3245	0	0	1	0.0268	0.0179	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EBC1_LUNG	0	1	0.0447	FALSE	13	9	0	364	0	FALSE	ACH-000563
EBC1_LUNG	BCL2L13--EP300	3	1	BCL2L13	4107	chr22:18138598:+	EP300	27924	chr22:41525894:+	ONLY_REF_SPLICE	YES	9	30	0.31	0.12	0.0268	0.0089	BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	EBC1_LUNG	0.12	0.31	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	ELF2--EGFLAM	3	1	ELF2	20589	chr4:139979823:-	EGFLAM	35872	chr5:38406228:+	INCL_NON_REF_SPLICE	YES	6	0	0.4	1	0.0268	0.0089	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,EGFLAM->EGF_like,_fibronectin_type_III_and_laminin_G_domains,chr5:38258511-38465123:+	EBC1_LUNG	0.4	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	RP11-114H23.1--RP11-114H23.2	1	8	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0089	0.0714	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	EBC1_LUNG	0.9	1	0.0803	FALSE	5	9	0	20	0	FALSE	ACH-000563
EBC1_LUNG	RP11-114H23.1--RP11-114H23.2	2	4	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	2	3	0.75	0.67	0.0179	0.0357	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	EBC1_LUNG	0.67	0.75	0.0536	FALSE	81	155	12	160	0	FALSE	ACH-000563
EBC1_LUNG	OTUD7A--CKMT1B	1	7	OTUD7A	1283	chr15:32162710:-	CKMT1B	23611	chr15:43885285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0089	0.0625	OTUD7A->OTU_deubiquitinase_7A,chr15:31775329-32162992:-,CKMT1B->chr15:43885252-43897099:+,creatine_kinase,_mitochondrial_1B	EBC1_LUNG	1	1	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	AGRN--NOC4L	2	1	AGRN	4732	chr1:970704:+	NOC4L	29706	chr12:132635526:+	ONLY_REF_SPLICE	YES	189	120	0.02	0.02	0.0179	0.0089	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BRCA:1|LUSC:1],{Klijn_CCL:Breast=1,Lung=1},AGRN->agrin,chr1:955503-991496:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	EBC1_LUNG	0.02	0.02	0.0268	TRUE	0	12	0	2	3	TRUE	ACH-000563
EBC1_LUNG	ABCC1--DDB2	2	0	ABCC1	13852	chr16:16150152:+	DDB2	50083	chr11:47259388:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,DDB2->Oncogene{Bushman},chr11:47236493-47260767:+,damage_specific_DNA_binding_protein_2	EBC1_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	AC005775.2--PIP5K1C	2	0	AC005775.2	1438	chr19:507376:-	PIP5K1C	11057	chr19:3661081:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	AC005775.2->chr19:490046-507813:-,PIP5K1C->chr19:3630181-3700477:-,phosphatidylinositol-4-phosphate_5-kinase_type_1_gamma	EBC1_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	C18orf25--GREB1L	1	4	C18orf25	3563	chr18:43796561:+	GREB1L	16349	chr18:18945988:+	ONLY_REF_SPLICE	YES	34	1	0.13	0.83	0.0089	0.0357	C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,GREB1L->chr18:18822203-19105378:+,growth_regulation_by_estrogen_in_breast_cancer-like	EBC1_LUNG	0.13	0.83	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	CCDC122--ENOX1	2	0	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	EBC1_LUNG	1	1	0.0179	FALSE	39	52	2	34	0	FALSE	ACH-000563
EBC1_LUNG	CHMP1A--FANCA	2	0	CHMP1A	1264	chr16:89723990:-	FANCA	48119	chr16:89807274:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	LOCAL_REARRANGEMENT:-:[79704],CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-,FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-	EBC1_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	MGA--GABRB3	2	0	MGA	2480	chr15:41952723:+	GABRB3	58355	chr15:26828561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	MGA->MGA,_MAX_dimerization_protein,chr15:41913422-42062141:+,GABRB3->chr15:26788693-27184686:-,gamma-aminobutyric_acid_type_A_receptor_beta3_subunit	EBC1_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	AC002066.1--AC073130.1	1	1	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	NO	13	0	0.13	1	0.0089	0.0089	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	EBC1_LUNG	0.13	1	0.0178	FALSE	0	1	1	30	0	FALSE	ACH-000563
EBC1_LUNG	AC074363.1--B3GALT1	1	1	AC074363.1	2265	chr2:168346787:+	B3GALT1	7585	chr2:168725321:+	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0089	0.0089	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	EBC1_LUNG	0.5	1	0.0178	TRUE	0	0	0	2	0	TRUE	ACH-000563
EBC1_LUNG	EIF3J--CTDSPL2	1	1	EIF3J	4326	chr15:44846865:+	CTDSPL2	30443	chr15:44816307:+	ONLY_REF_SPLICE	NO	995	190	0	0.01	0.0089	0.0089	LOCAL_REARRANGEMENT:+:[8019],EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J,CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+	EBC1_LUNG	0	0.01	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000563
EBC1_LUNG	ELF2--EGFLAM	1	1	ELF2	18934	chr4:139981478:-	EGFLAM	35872	chr5:38406228:+	ONLY_REF_SPLICE	YES	44	0	0.04	1	0.0089	0.0089	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,EGFLAM->EGF_like,_fibronectin_type_III_and_laminin_G_domains,chr5:38258511-38465123:+	EBC1_LUNG	0.04	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000563
EBC1_LUNG	HIF1A--RP11-47I22.3	1	1	HIF1A	1327	chr14:62162557:+	RP11-47I22.3	25003	chr14:62117680:+	ONLY_REF_SPLICE	YES	943	1	0	0.67	0.0089	0.0089	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	EBC1_LUNG	0	0.67	0.0178	FALSE	0	2	0	2	2	FALSE	ACH-000563
SW403_LARGE_INTESTINE	DNAJC3--VWA8	27	3	DNAJC3	4510	chr13:96377506:+	VWA8	23656	chr13:42465723:-	ONLY_REF_SPLICE	YES	2	17	0.94	0.64	0.4779	0.0531	DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+,VWA8->chr13:42140973-42535256:-,von_Willebrand_factor_A_domain_containing_8	SW403_LARGE_INTESTINE	0.64	0.94	0.531	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	CDH17--WDR48	3	0	CDH17	15403	chr8:95164140:-	WDR48	45867	chr3:39137534:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0	CDH17->cadherin_17,chr8:95139399-95229531:-,WDR48->WD_repeat_domain_48,chr3:39093489-39138155:+	SW403_LARGE_INTESTINE	1	1	0.0531	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	GBA--SLC25A25	3	0	GBA	8906	chr1:155204766:-	SLC25A25	24345	chr9:130871061:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0	GBA->chr1:155204243-155214490:-,glucosylceramidase_beta,SLC25A25->chr9:130830480-130871524:+,solute_carrier_family_25_member_25	SW403_LARGE_INTESTINE	1	1	0.0531	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	PCDH1--HDAC2	3	0	PCDH1	8686	chr5:141243226:-	HDAC2	34640	chr6:114264574:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0	PCDH1->chr5:141232938-141258811:-,protocadherin_1,HDAC2->Oncogene{Bushman},chr6:114254192-114332472:-,histone_deacetylase_2	SW403_LARGE_INTESTINE	1	1	0.0531	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	AGPAT3--NDUFV3	2	0	AGPAT3	14510	chr21:45379740:+	NDUFV3	41146	chr21:44328974:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+,NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	ARHGAP12--GNPAT	2	0	ARHGAP12	1132	chr10:32217611:-	GNPAT	35464	chr1:231406504:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	ARHGAP12->Rho_GTPase_activating_protein_12,chr10:32094365-32217742:-,GNPAT->chr1:231376953-231413719:+,glyceronephosphate_O-acyltransferase	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	CSTB--LMNB1	2	0	CSTB	1242	chr21:45196085:-	LMNB1	19858	chr5:126168386:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	CSTB->Oncogene{Bushman},chr21:45192393-45196326:-,cystatin_B,LMNB1->chr5:126112315-126172712:+,lamin_B1	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	DLEU2--MRPS28	2	0	DLEU2	1419	chr13:50699438:-	MRPS28	20141	chr8:80831383:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),MRPS28->chr8:80830952-80942524:-,mitochondrial_ribosomal_protein_S28	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	LEPR--SNRPD1	2	0	LEPR	2252	chr1:65891061:+	SNRPD1	37664	chr18:19202686:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	LEPR->chr1:65886248-66107242:+,leptin_receptor,SNRPD1->chr18:19192228-19210417:+,small_nuclear_ribonucleoprotein_D1_polypeptide	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	MCM3AP--PCNT	2	0	MCM3AP	7597	chr21:47695100:-	PCNT	49226	chr21:47783395:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[37825],MCM3AP->chr21:47655047-47706211:-,minichromosome_maintenance_complex_component_3_associated_protein,PCNT->chr21:47744036-47865682:+,pericentrin	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	NPNT--PPA2	2	0	NPNT	3050	chr4:106819158:+	PPA2	38003	chr4:106320321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Thyroid=5,Artery_-_Tibial=2,Artery_-_Aorta=2,Lung=1},NPNT->chr4:106815932-106925184:+,nephronectin,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	1	5	1	3	1	TRUE	ACH-000820
SW403_LARGE_INTESTINE	RP11-304L19.5--MAT2B	2	0	RP11-304L19.5	1216	chr16:2205144:-	MAT2B	7076	chr5:162939008:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	RP11-304L19.5->chr16:2204798-2205359:-,MAT2B->chr5:162930120-162946342:+,methionine_adenosyltransferase_2B	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	RSBN1L-AS1--ATIC	2	0	RSBN1L-AS1	2497	chr7:77314519:-	ATIC	19407	chr2:216199642:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	RSBN1L-AS1->chr7:77286977-77325582:-,ATIC->5-aminoimidazole-4-carboxamide_ribonucleotide_formyltransferase/IMP_cyclohydrolase,Oncogene{Bushman},chr2:216176540-216214487:+	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	WWP2--SASH1	2	0	WWP2	14499	chr16:69905834:+	SASH1	48211	chr6:148835460:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	WWP2->WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr16:69796209-69975644:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SW403_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
SW403_LARGE_INTESTINE	ST6GALNAC1--RPL30	1	1	ST6GALNAC1	1331	chr17:74639590:-	RPL30	14509	chr8:99057627:-	ONLY_REF_SPLICE	YES	36	2	0.05	0.5	0.0177	0.0177	ST6GALNAC1->Oncogene{Bushman},ST6_N-acetylgalactosaminide_alpha-2,6-sialyltransferase_1,chr17:74620843-74639920:-,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	SW403_LARGE_INTESTINE	0.05	0.5	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000820
GSS_STOMACH	GNPTAB--NUP37	622	268	GNPTAB	1380	chr12:102224337:-	NUP37	39420	chr12:102471281:-	ONLY_REF_SPLICE	YES	87	266	0.91	0.77	7.0635	3.0435	GNPTAB->N-acetylglucosamine-1-phosphate_transferase_alpha_and_beta_subunits,chr12:102139275-102224716:-,NUP37->chr12:102467967-102513902:-,nucleoporin_37kDa	GSS_STOMACH	0.77	0.91	10.107	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	FAM102A--RP11-395P17.3	417	513	FAM102A	13152	chr9:130703794:-	RP11-395P17.3	17526	chr9:130880576:-	INCL_NON_REF_SPLICE	YES	164	10	0.85	0.99	4.7355	5.8257	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,RP11-395P17.3->chr9:130873450-130881013:-	GSS_STOMACH	0.85	0.99	10.5612	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	AP003900.6--AC008132.1	291	39	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	7	0	0.98	1	3.3046	0.4429	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	GSS_STOMACH	0.98	1	3.7475	TRUE	0	0	0	25	0	FALSE	ACH-000746
GSS_STOMACH	TIMM23B--LINC00843	155	85	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.7602	0.9653	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	GSS_STOMACH	1	1	2.7255	TRUE	508	994	45	981	0	FALSE	ACH-000746
GSS_STOMACH	SLC1A5--SLCO4A1	106	0	SLC1A5	9682	chr19:47278320:-	SLCO4A1	24996	chr20:61303381:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2038	0	HGNC_GENEFAM,SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1	GSS_STOMACH	1	1	1.2038	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	TIMM23--RP11-464F9.1	102	12	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	395	3	0.22	0.97	1.1583	0.1363	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	GSS_STOMACH	0.22	0.97	1.2946	TRUE	519	3926	326	965	0	FALSE	ACH-000746
GSS_STOMACH	GNPTAB--NUP37	24	270	GNPTAB	1380	chr12:102224337:-	NUP37	38262	chr12:102472994:-	ONLY_REF_SPLICE	YES	87	281	0.77	0.51	0.2725	3.0662	GNPTAB->N-acetylglucosamine-1-phosphate_transferase_alpha_and_beta_subunits,chr12:102139275-102224716:-,NUP37->chr12:102467967-102513902:-,nucleoporin_37kDa	GSS_STOMACH	0.51	0.77	3.3387	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	PPP1R10--MDC1	64	55	PPP1R10	10244	chr6:30572365:-	MDC1	24208	chr6:30676134:-	ONLY_REF_SPLICE	YES	119	110	0.5	0.52	0.7268	0.6246	LOCAL_REARRANGEMENT:-:[81195],PPP1R10->chr6:30568177-30586389:-,protein_phosphatase_1_regulatory_subunit_10,MDC1->chr6:30667584-30685666:-,mediator_of_DNA_damage_checkpoint_1	GSS_STOMACH	0.5	0.52	1.3514	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SLCO3A1--AC068831.10	50	52	SLCO3A1	5545	chr15:92459688:+	AC068831.10	32633	chr15:91573889:+	ONLY_REF_SPLICE	YES	596	6	0.15	0.94	0.5678	0.5905	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,AC068831.10->chr15:91565849-91579841:+	GSS_STOMACH	0.15	0.94	1.1583	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SHISA9--U91319.1	56	22	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	146	1	0.35	0.99	0.6359	0.2498	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	GSS_STOMACH	0.35	0.99	0.8857	FALSE	4	37	0	19	0	FALSE	ACH-000746
GSS_STOMACH	ZCCHC14--DOCK3	50	35	ZCCHC14	13538	chr16:87445122:-	DOCK3	23877	chr3:50879106:+	ONLY_REF_SPLICE	YES	94	0	0.47	1	0.5678	0.3975	ZCCHC14->chr16:87439852-87525651:-,zinc_finger_CCHC-type_containing_14,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	GSS_STOMACH	0.47	1	0.9653	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SIPA1L3--ZNF569	55	0	SIPA1L3	4162	chr19:38519796:+	ZNF569	42317	chr19:37956375:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6246	0	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,ZNF569->Oncogene{Bushman},chr19:37902057-37960177:-,zinc_finger_protein_569	GSS_STOMACH	1	1	0.6246	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	RALGPS2--RASAL2	43	25	RALGPS2	1255	chr1:178694554:+	RASAL2	39191	chr1:178359235:+	ONLY_REF_SPLICE	YES	111	11	0.38	0.86	0.4883	0.2839	HGNC_GENEFAM,RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+,RASAL2->Oncogene{Bushman},RAS_protein_activator_like_2,chr1:178062864-178448644:+	GSS_STOMACH	0.38	0.86	0.7722	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	AP003900.6--AC008132.1	41	25	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	7	0	0.9	1	0.4656	0.2839	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	GSS_STOMACH	0.9	1	0.7495	TRUE	0	0	0	16	0	TRUE	ACH-000746
GSS_STOMACH	AP003900.6--AC008132.1	27	74	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	26	0	0.8	1	0.3066	0.8404	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	GSS_STOMACH	0.8	1	1.147	TRUE	1	1	0	28	1	FALSE	ACH-000746
GSS_STOMACH	MT-TA--MT-TC	43	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4883	0.1136	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GSS_STOMACH	1	1	0.6019	FALSE	462	80	0	856	0	FALSE	ACH-000746
GSS_STOMACH	GNPTAB--NUP37	30	60	GNPTAB	1313	chr12:102224404:-	NUP37	39420	chr12:102471281:-	INCL_NON_REF_SPLICE	YES	14	266	0.87	0.25	0.3407	0.6814	GNPTAB->N-acetylglucosamine-1-phosphate_transferase_alpha_and_beta_subunits,chr12:102139275-102224716:-,NUP37->chr12:102467967-102513902:-,nucleoporin_37kDa	GSS_STOMACH	0.25	0.87	1.0221	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	ATXN7L3--IGF2	39	0	ATXN7L3	6307	chr17:42272175:-	IGF2	22861	chr11:2153287:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4429	0	ATXN7L3->ataxin_7_like_3,chr17:42269173-42277481:-,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	GSS_STOMACH	1	1	0.4429	TRUE	0	0	0	2	0	TRUE	ACH-000746
GSS_STOMACH	PPP1R10--MDC1	31	24	PPP1R10	10244	chr6:30572365:-	MDC1	25111	chr6:30675231:-	ONLY_REF_SPLICE	YES	119	136	0.32	0.29	0.352	0.2725	LOCAL_REARRANGEMENT:-:[81195],PPP1R10->chr6:30568177-30586389:-,protein_phosphatase_1_regulatory_subunit_10,MDC1->chr6:30667584-30685666:-,mediator_of_DNA_damage_checkpoint_1	GSS_STOMACH	0.29	0.32	0.6245	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	PPA1--NPFFR1	28	22	PPA1	4713	chr10:71977568:-	NPFFR1	17564	chr10:72026147:-	ONLY_REF_SPLICE	YES	1224	0	0.04	1	0.318	0.2498	LOCAL_REARRANGEMENT:-:[13418],PPA1->chr10:71962586-71993667:-,pyrophosphatase_(inorganic)_1,NPFFR1->chr10:72007085-72043432:-,neuropeptide_FF_receptor_1	GSS_STOMACH	0.04	1	0.5678	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	TNIP1--SLC36A2	28	7	TNIP1	22804	chr5:150413169:-	SLC36A2	35593	chr5:150712883:-	ONLY_REF_SPLICE	YES	35	0	0.5	1	0.318	0.0795	TNIP1->TNFAIP3_interacting_protein_1,chr5:150409506-150473138:-,SLC36A2->chr5:150694539-150727151:-,solute_carrier_family_36_member_2	GSS_STOMACH	0.5	1	0.3975	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	ZCCHC14--DOCK3	17	48	ZCCHC14	15337	chr16:87443247:-	DOCK3	23877	chr3:50879106:+	INCL_NON_REF_SPLICE	YES	63	0	0.51	1	0.1931	0.5451	ZCCHC14->chr16:87439852-87525651:-,zinc_finger_CCHC-type_containing_14,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	GSS_STOMACH	0.51	1	0.7382	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	BIN3--CTD-3247F14.2	23	21	BIN3	6488	chr8:22487477:-	CTD-3247F14.2	20440	chr8:22537739:-	INCL_NON_REF_SPLICE	YES	168	1	0.21	0.98	0.2612	0.2385	LOCAL_REARRANGEMENT:-:[9865],BIN3->bridging_integrator_3,chr8:22477931-22526661:-,CTD-3247F14.2->chr8:22536526-22541522:-	GSS_STOMACH	0.21	0.98	0.4997	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	AP003900.6--AC008132.1	22	16	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	7	20	0.84	0.66	0.2498	0.1817	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	GSS_STOMACH	0.66	0.84	0.4315	TRUE	0	0	0	13	0	TRUE	ACH-000746
GSS_STOMACH	FAM102A--RP11-395P17.3	14	40	FAM102A	11688	chr9:130705258:-	RP11-395P17.3	17705	chr9:130880397:-	INCL_NON_REF_SPLICE	YES	740	113	0.07	0.32	0.159	0.4542	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,RP11-395P17.3->chr9:130873450-130881013:-	GSS_STOMACH	0.07	0.32	0.6132	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	FAM102A--RP11-395P17.3	15	30	FAM102A	11528	chr9:130705418:-	RP11-395P17.3	17705	chr9:130880397:-	INCL_NON_REF_SPLICE	YES	538	113	0.08	0.28	0.1703	0.3407	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,RP11-395P17.3->chr9:130873450-130881013:-	GSS_STOMACH	0.08	0.28	0.511	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	CPLX2--MT-RNR2	21	5	CPLX2	11912	chr5:175307076:+	MT-RNR2	18888	chrM:1699:+	INCL_NON_REF_SPLICE	YES	1754	0	0.01	1	0.2385	0.0568	CPLX2->Oncogene{Bushman},chr5:175223313-175311023:+,complexin_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GSS_STOMACH	0.01	1	0.2953	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	CAP1--RP11-69E11.8	22	0	CAP1	1569	chr1:40506473:+	RP11-69E11.8	18207	chr1:40036152:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2498	0	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,RP11-69E11.8->chr1:40030832-40038875:+	GSS_STOMACH	1	1	0.2498	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	GMCL1--ANXA4	19	12	GMCL1	11029	chr2:70082092:+	ANXA4	44087	chr2:70047831:+	ONLY_REF_SPLICE	YES	98	108	0.24	0.22	0.2158	0.1363	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[3178],GMCL1->chr2:70056774-70108528:+,germ_cell-less,_spermatogenesis_associated_1,ANXA4->annexin_A4,chr2:69871557-70053596:+	GSS_STOMACH	0.22	0.24	0.3521	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	RP11-123O10.4--GRIP1	19	11	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2158	0.1249	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	GSS_STOMACH	1	1	0.3407	FALSE	416	2512	207	587	0	FALSE	ACH-000746
GSS_STOMACH	FAM102A--RP11-395P17.3	16	22	FAM102A	10052	chr9:130706894:-	RP11-395P17.3	17705	chr9:130880397:-	INCL_NON_REF_SPLICE	YES	796	113	0.05	0.25	0.1817	0.2498	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,RP11-395P17.3->chr9:130873450-130881013:-	GSS_STOMACH	0.05	0.25	0.4315	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SLC1A5--MT-ND4L	19	9	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	8633	0	0	1	0.2158	0.1022	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GSS_STOMACH	0	1	0.318	FALSE	0	0	0	189	0	FALSE	ACH-000746
GSS_STOMACH	NAA25--ZNF569	3	69	NAA25	1307	chr12:112546520:-	ZNF569	38661	chr19:37956375:-	ONLY_REF_SPLICE	YES	2	0	0.97	1	0.0341	0.7836	NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,ZNF569->Oncogene{Bushman},chr19:37902057-37960177:-,zinc_finger_protein_569	GSS_STOMACH	0.97	1	0.8177	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	CCND3--TRERF1	15	18	CCND3	2857	chr6:42016239:-	TRERF1	16958	chr6:42330817:-	ONLY_REF_SPLICE	YES	67	15	0.33	0.69	0.1703	0.2044	CCND3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:41902671-42018095:-,cyclin_D3,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	GSS_STOMACH	0.33	0.69	0.3747	TRUE	0	3	0	1	3	TRUE	ACH-000746
GSS_STOMACH	SLCO3A1--AC068831.10	5	58	SLCO3A1	5545	chr15:92459688:+	AC068831.10	31855	chr15:91573111:+	ONLY_REF_SPLICE	YES	596	1	0.1	0.98	0.0568	0.6587	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,AC068831.10->chr15:91565849-91579841:+	GSS_STOMACH	0.1	0.98	0.7155	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SLCO3A1--AC068831.10	6	53	SLCO3A1	5545	chr15:92459688:+	AC068831.10	32105	chr15:91573361:+	ONLY_REF_SPLICE	YES	596	7	0.09	0.89	0.0681	0.6019	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,AC068831.10->chr15:91565849-91579841:+	GSS_STOMACH	0.09	0.89	0.67	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SMG5--IGSF9	16	12	SMG5	17196	chr1:156222680:-	IGSF9	31908	chr1:159901696:-	INCL_NON_REF_SPLICE	YES	331	27	0.08	0.51	0.1817	0.1363	SMG5->SMG5_nonsense_mediated_mRNA_decay_factor,chr1:156219015-156252620:-,IGSF9->chr1:159896829-159915386:-,immunoglobulin_superfamily_member_9	GSS_STOMACH	0.08	0.51	0.318	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SLCO3A1--AC068831.10	4	59	SLCO3A1	5545	chr15:92459688:+	AC068831.10	30196	chr15:91566543:+	ONLY_REF_SPLICE	YES	596	0	0.1	1	0.0454	0.67	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,AC068831.10->chr15:91565849-91579841:+	GSS_STOMACH	0.1	1	0.7154	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	HSP90AB1--MT-RNR2	16	4	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4860	0	0	1	0.1817	0.0454	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GSS_STOMACH	0	1	0.2271	FALSE	13	9	0	364	0	FALSE	ACH-000746
GSS_STOMACH	BSG--SHC2	16	2	BSG	2405	chr19:572701:+	SHC2	22277	chr19:425231:-	ONLY_REF_SPLICE	YES	1280	349	0.01	0.05	0.1817	0.0227	GTEx_FI:{Vagina=[count:1=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=3;pct=0.03%;dist=Pancreas=1,Lung=1,Vagina=1},BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,SHC2->SHC_(Src_homology_2_domain_containing)_transforming_protein_2,chr19:416583-460996:-	GSS_STOMACH	0.01	0.05	0.2044	TRUE	6	22	0	2	0	FALSE	ACH-000746
GSS_STOMACH	FAM102A--RP11-395P17.3	7	37	FAM102A	11618	chr9:130705328:-	RP11-395P17.3	17705	chr9:130880397:-	INCL_NON_REF_SPLICE	YES	781	113	0.05	0.28	0.0795	0.4202	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,RP11-395P17.3->chr9:130873450-130881013:-	GSS_STOMACH	0.05	0.28	0.4997	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	AP003900.6--AC008132.1	4	46	AP003900.6	3299	chr21:11174002:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	26	0	0.66	1	0.0454	0.5224	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	GSS_STOMACH	0.66	1	0.5678	TRUE	0	0	0	11	0	TRUE	ACH-000746
GSS_STOMACH	H19--FTL	10	22	H19	3986	chr11:2017373:-	FTL	7995	chr19:49468599:+	INCL_NON_REF_SPLICE	YES	18030	0	0	1	0.1136	0.2498	H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	GSS_STOMACH	0	1	0.3634	TRUE	0	0	0	2	0	FALSE	ACH-000746
GSS_STOMACH	FAM102A--RP11-395P17.3	5	40	FAM102A	11836	chr9:130705110:-	RP11-395P17.3	17705	chr9:130880397:-	INCL_NON_REF_SPLICE	YES	642	113	0.07	0.28	0.0568	0.4542	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,RP11-395P17.3->chr9:130873450-130881013:-	GSS_STOMACH	0.07	0.28	0.511	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	C15orf57--CBX3	9	22	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	74	115	0.3	0.21	0.1022	0.2498	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	GSS_STOMACH	0.21	0.3	0.352	TRUE	267	562	48	632	0	FALSE	ACH-000746
GSS_STOMACH	PSKH1--NFATC3	12	8	PSKH1	7080	chr16:67962684:+	NFATC3	23619	chr16:68215378:+	INCL_NON_REF_SPLICE	YES	57	241	0.26	0.08	0.1363	0.0908	PSKH1->chr16:67927175-67963581:+,protein_serine_kinase_H1,NFATC3->Oncogene{Bushman},chr16:68118654-68263162:+,nuclear_factor_of_activated_T-cells_3	GSS_STOMACH	0.08	0.26	0.2271	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	HSP90AB1--MT-RNR2	12	5	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4940	0	0	1	0.1363	0.0568	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GSS_STOMACH	0	1	0.1931	FALSE	13	9	0	364	0	FALSE	ACH-000746
GSS_STOMACH	ZNRF3--EMID1	12	5	ZNRF3	3718	chr22:29383189:+	EMID1	20692	chr22:29610915:+	ONLY_REF_SPLICE	YES	91	27	0.16	0.39	0.1363	0.0568	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,EMID1->EMI_domain_containing_1,chr22:29601840-29655586:+	GSS_STOMACH	0.16	0.39	0.1931	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	RP11-266K4.9--FAM66C	12	3	RP11-266K4.9	1585	chr12:8388595:+	FAM66C	19040	chr12:8368402:+	ONLY_REF_SPLICE	YES	49	0	0.23	1	0.1363	0.0341	GTEx_FI:{Brain=[count:45=pct:6.8],Esophagus=[count:2=pct:0.5],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Colon=[count:2=pct:1.0],Uterus=[count:1=pct:2.3],Pituitary=[count:1=pct:1.9],Testis=[count:1=pct:1.0]},LOCAL_REARRANGEMENT:+:[19264],RP11-266K4.9->chr12:8388011-8395160:+,FAM66C->chr12:8332805-8368747:+,family_with_sequence_similarity_66_member_C	GSS_STOMACH	0.23	1	0.1704	TRUE	33	15	0	5	0	FALSE	ACH-000746
GSS_STOMACH	NKD1--ADCY7	11	5	NKD1	2226	chr16:50583466:+	ADCY7	26052	chr16:50326587:+	ONLY_REF_SPLICE	YES	3117	84	0.01	0.16	0.1249	0.0568	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	GSS_STOMACH	0.01	0.16	0.1817	TRUE	0	1	0	3	1	FALSE	ACH-000746
GSS_STOMACH	ZCCHC14--DOCK3	3	37	ZCCHC14	14806	chr16:87443778:-	DOCK3	23877	chr3:50879106:+	INCL_NON_REF_SPLICE	YES	114	0	0.26	1	0.0341	0.4202	ZCCHC14->chr16:87439852-87525651:-,zinc_finger_CCHC-type_containing_14,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	GSS_STOMACH	0.26	1	0.4543	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1363	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	GSS_STOMACH	1	1	0.1363	TRUE	0	0	0	434	0	FALSE	ACH-000746
GSS_STOMACH	FAM102A--RP11-395P17.3	4	29	FAM102A	11482	chr9:130705464:-	RP11-395P17.3	17705	chr9:130880397:-	INCL_NON_REF_SPLICE	YES	622	113	0.05	0.23	0.0454	0.3293	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,RP11-395P17.3->chr9:130873450-130881013:-	GSS_STOMACH	0.05	0.23	0.3747	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	RP11-114H23.1--RP11-114H23.2	9	8	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.1022	0.0908	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	GSS_STOMACH	0.89	1	0.193	FALSE	81	155	12	160	0	FALSE	ACH-000746
GSS_STOMACH	FAM102A--RP11-395P17.3	3	30	FAM102A	11541	chr9:130705405:-	RP11-395P17.3	17703	chr9:130880399:-	INCL_NON_REF_SPLICE	YES	555	113	0.06	0.23	0.0341	0.3407	FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A,RP11-395P17.3->chr9:130873450-130881013:-	GSS_STOMACH	0.06	0.23	0.3748	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	C9orf3--IGF2	10	1	C9orf3	35930	chr9:97845840:+	IGF2	51854	chr11:2153255:-	INCL_NON_REF_SPLICE	NO	557	4914	0.02	0	0.1136	0.0114	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	GSS_STOMACH	0	0.02	0.125	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	CCND3--TRERF1	5	21	CCND3	7748	chr6:41908108:-	TRERF1	16958	chr6:42330817:-	ONLY_REF_SPLICE	YES	100	15	0.21	0.63	0.0568	0.2385	CCND3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:41902671-42018095:-,cyclin_D3,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	GSS_STOMACH	0.21	0.63	0.2953	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	MT-CO3--MT-ATP6	10	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	4	0	0.73	1	0.1136	0.0114	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GSS_STOMACH	0.73	1	0.125	FALSE	189	492	56	216	0	FALSE	ACH-000746
GSS_STOMACH	SLCO3A1--SV2B	8	9	SLCO3A1	5545	chr15:92459688:+	SV2B	33500	chr15:91769103:+	ONLY_REF_SPLICE	YES	596	1	0.03	0.94	0.0908	0.1022	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,SV2B->chr15:91643180-91844539:+,synaptic_vesicle_glycoprotein_2B	GSS_STOMACH	0.03	0.94	0.193	TRUE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	AP000525.9--LA16c-60G3.6	8	8	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	48	0	0.25	1	0.0908	0.0908	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	GSS_STOMACH	0.25	1	0.1816	TRUE	0	42	0	133	42	FALSE	ACH-000746
GSS_STOMACH	AP003900.6--AC008132.1	3	28	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	26	20	0.54	0.61	0.0341	0.318	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	GSS_STOMACH	0.54	0.61	0.3521	TRUE	0	0	0	13	0	TRUE	ACH-000746
GSS_STOMACH	EIF1--RPL5	10	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1136	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	GSS_STOMACH	1	1	0.1136	TRUE	0	0	0	39	0	FALSE	ACH-000746
GSS_STOMACH	BIN3--EGR3	7	11	BIN3	8631	chr8:22483173:-	EGR3	18751	chr8:22548721:-	INCL_NON_REF_SPLICE	YES	170	0	0.1	1	0.0795	0.1249	LOCAL_REARRANGEMENT:-:[18511],BIN3->bridging_integrator_3,chr8:22477931-22526661:-,EGR3->Oncogene{Bushman},chr8:22545172-22550815:-,early_growth_response_3	GSS_STOMACH	0.1	1	0.2044	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	PSKH1--NFATC3	9	3	PSKH1	4241	chr16:67943609:+	NFATC3	23619	chr16:68215378:+	ONLY_REF_SPLICE	YES	41	241	0.23	0.05	0.1022	0.0341	PSKH1->chr16:67927175-67963581:+,protein_serine_kinase_H1,NFATC3->Oncogene{Bushman},chr16:68118654-68263162:+,nuclear_factor_of_activated_T-cells_3	GSS_STOMACH	0.05	0.23	0.1363	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	MT-TA--MT-TC	6	14	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0681	0.159	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GSS_STOMACH	1	1	0.2271	FALSE	462	80	0	856	0	FALSE	ACH-000746
GSS_STOMACH	C15orf57--CBX3	5	16	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	72	118	0.23	0.15	0.0568	0.1817	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	GSS_STOMACH	0.15	0.23	0.2385	TRUE	267	562	48	632	0	FALSE	ACH-000746
GSS_STOMACH	MT-TA--MT-TC	6	11	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0681	0.1249	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GSS_STOMACH	1	1	0.193	FALSE	462	80	0	856	0	FALSE	ACH-000746
GSS_STOMACH	RP11-120D5.1--MID1	7	7	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	26	0.67	0.35	0.0795	0.0795	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	GSS_STOMACH	0.35	0.67	0.159	FALSE	16	356	14	466	0	FALSE	ACH-000746
GSS_STOMACH	SHISA9--U91319.1	3	22	SHISA9	9974	chr16:13297406:+	U91319.1	21484	chr16:13352190:+	ONLY_REF_SPLICE	YES	146	0	0.15	1	0.0341	0.2498	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	GSS_STOMACH	0.15	1	0.2839	FALSE	0	14	0	12	0	FALSE	ACH-000746
GSS_STOMACH	C9orf3--IGF2	8	1	C9orf3	35718	chr9:97845628:+	IGF2	51845	chr11:2153264:-	INCL_NON_REF_SPLICE	NO	581	4992	0.02	0	0.0908	0.0114	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	GSS_STOMACH	0	0.02	0.1022	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	C9orf3--IGF2	8	1	C9orf3	35769	chr9:97845679:+	IGF2	51846	chr11:2153263:-	INCL_NON_REF_SPLICE	NO	569	4921	0.02	0	0.0908	0.0114	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	GSS_STOMACH	0	0.02	0.1022	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	CAP1--RP11-69E11.8	8	0	CAP1	1551	chr1:40506455:+	RP11-69E11.8	18207	chr1:40036152:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0908	0	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,RP11-69E11.8->chr1:40030832-40038875:+	GSS_STOMACH	1	1	0.0908	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	TNIP1--SLC36A2	7	3	TNIP1	21410	chr5:150414563:-	SLC36A2	35593	chr5:150712883:-	ONLY_REF_SPLICE	YES	56	0	0.15	1	0.0795	0.0341	TNIP1->TNFAIP3_interacting_protein_1,chr5:150409506-150473138:-,SLC36A2->chr5:150694539-150727151:-,solute_carrier_family_36_member_2	GSS_STOMACH	0.15	1	0.1136	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	ZCCHC14--DOCK3	1	27	ZCCHC14	13538	chr16:87445122:-	DOCK3	24918	chr3:50927457:+	ONLY_REF_SPLICE	YES	94	0	0.23	1	0.0114	0.3066	ZCCHC14->chr16:87439852-87525651:-,zinc_finger_CCHC-type_containing_14,DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3	GSS_STOMACH	0.23	1	0.318	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SLCO3A1--AC068831.10	5	10	SLCO3A1	5545	chr15:92459688:+	AC068831.10	35226	chr15:91578148:+	ONLY_REF_SPLICE	YES	596	0	0.02	1	0.0568	0.1136	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,AC068831.10->chr15:91565849-91579841:+	GSS_STOMACH	0.02	1	0.1704	TRUE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	SLCO3A1--SV2B	5	10	SLCO3A1	5545	chr15:92459688:+	SV2B	32409	chr15:91671953:+	ONLY_REF_SPLICE	YES	596	0	0.02	1	0.0568	0.1136	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,SV2B->chr15:91643180-91844539:+,synaptic_vesicle_glycoprotein_2B	GSS_STOMACH	0.02	1	0.1704	TRUE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	C9orf3--IGF2	7	1	C9orf3	35718	chr9:97845628:+	IGF2	51744	chr11:2153365:-	INCL_NON_REF_SPLICE	NO	581	2472	0.01	0	0.0795	0.0114	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	GSS_STOMACH	0	0.01	0.0909	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	C9orf3--IGF2	7	1	C9orf3	35718	chr9:97845628:+	IGF2	51864	chr11:2153245:-	INCL_NON_REF_SPLICE	NO	581	4597	0.01	0	0.0795	0.0114	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	GSS_STOMACH	0	0.01	0.0909	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	CAP1--RP11-69E11.8	6	5	CAP1	2261	chr1:40507165:+	RP11-69E11.8	18207	chr1:40036152:+	ONLY_REF_SPLICE	YES	17	0	0.39	1	0.0681	0.0568	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,RP11-69E11.8->chr1:40030832-40038875:+	GSS_STOMACH	0.39	1	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SLC1A5--MT-ND4L	5	9	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	8761	0	0	1	0.0568	0.1022	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GSS_STOMACH	0	1	0.159	FALSE	0	0	0	189	0	FALSE	ACH-000746
GSS_STOMACH	AP003900.6--AC008132.1	2	20	AP003900.6	2187	chr21:11172043:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	NO	21	20	0.51	0.52	0.0227	0.2271	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	GSS_STOMACH	0.51	0.52	0.2498	TRUE	0	0	0	3	0	TRUE	ACH-000746
GSS_STOMACH	CCND3--TRERF1	2	19	CCND3	6666	chr6:41909190:-	TRERF1	16958	chr6:42330817:-	ONLY_REF_SPLICE	YES	85	15	0.2	0.58	0.0227	0.2158	CCND3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:41902671-42018095:-,cyclin_D3,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	GSS_STOMACH	0.2	0.58	0.2385	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SHISA9--U91319.1	1	22	SHISA9	11022	chr16:13307157:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	NO	155	1	0.13	0.96	0.0114	0.2498	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	GSS_STOMACH	0.13	0.96	0.2612	FALSE	0	1	0	2	0	FALSE	ACH-000746
GSS_STOMACH	CPLX2--MT-RNR2	5	4	CPLX2	11895	chr5:175307059:+	MT-RNR2	18870	chrM:1681:+	INCL_NON_REF_SPLICE	YES	1958	0	0	1	0.0568	0.0454	CPLX2->Oncogene{Bushman},chr5:175223313-175311023:+,complexin_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	GSS_STOMACH	0	1	0.1022	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	NKD1--ADCY7	4	8	NKD1	2226	chr16:50583466:+	ADCY7	23908	chr16:50324368:+	ONLY_REF_SPLICE	YES	3117	106	0	0.1	0.0454	0.0908	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	GSS_STOMACH	0	0.1	0.1362	TRUE	0	0	0	3	0	FALSE	ACH-000746
GSS_STOMACH	BIN3--EGR3	4	6	BIN3	6488	chr8:22487477:-	EGR3	18815	chr8:22548657:-	INCL_NON_REF_SPLICE	YES	168	0	0.06	1	0.0454	0.0681	LOCAL_REARRANGEMENT:-:[18511],BIN3->bridging_integrator_3,chr8:22477931-22526661:-,EGR3->Oncogene{Bushman},chr8:22545172-22550815:-,early_growth_response_3	GSS_STOMACH	0.06	1	0.1135	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	CCND3--TRERF1	1	18	CCND3	4039	chr6:41997747:-	TRERF1	16958	chr6:42330817:-	ONLY_REF_SPLICE	NO	69	15	0.22	0.56	0.0114	0.2044	CCND3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:41902671-42018095:-,cyclin_D3,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	GSS_STOMACH	0.22	0.56	0.2158	TRUE	0	1	0	1	1	TRUE	ACH-000746
GSS_STOMACH	RP4-583P15.11--ZBTB46	5	0	RP4-583P15.11	1080	chr20:62439508:+	ZBTB46	7686	chr20:62422143:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0568	0	NEIGHBORS_OVERLAP:+:-:[8445],RP4-583P15.11->chr20:62439429-62447874:+,ZBTB46->chr20:62375019-62462597:-,zinc_finger_and_BTB_domain_containing_46	GSS_STOMACH	1	1	0.0568	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	CCND3--TRERF1	1	15	CCND3	7748	chr6:41908108:-	TRERF1	18091	chr6:42268487:-	ONLY_REF_SPLICE	YES	100	15	0.14	0.52	0.0114	0.1703	CCND3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:41902671-42018095:-,cyclin_D3,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	GSS_STOMACH	0.14	0.52	0.1817	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	C9orf3--IGF2	4	1	C9orf3	35879	chr9:97845789:+	IGF2	51902	chr11:2153207:-	INCL_NON_REF_SPLICE	YES	567	3935	0.01	0	0.0454	0.0114	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	GSS_STOMACH	0	0.01	0.0568	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	FTH1--ACTG1	4	1	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	1004	3	0	0.62	0.0454	0.0114	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	GSS_STOMACH	0	0.62	0.0568	FALSE	0	0	0	64	0	FALSE	ACH-000746
GSS_STOMACH	C9orf3--IGF2	4	0	C9orf3	35879	chr9:97845789:+	IGF2	52309	chr11:2152800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0454	0	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	GSS_STOMACH	1	1	0.0454	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	CPSF6--PGBD2	4	0	CPSF6	11046	chr12:69656342:+	PGBD2	23586	chr1:249211478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0454	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Adipose_-_Subcutaneous=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PGBD2->chr1:249200395-249214145:+,piggyBac_transposable_element_derived_2	GSS_STOMACH	1	1	0.0454	TRUE	0	7	0	6	2	TRUE	ACH-000746
GSS_STOMACH	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0454	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GSS_STOMACH	1	1	0.0454	FALSE	462	80	0	856	0	FALSE	ACH-000746
GSS_STOMACH	RP11-114H23.1--RP11-114H23.2	1	12	RP11-114H23.1	3580	chr12:76085885:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.0114	0.1363	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	GSS_STOMACH	0.76	1	0.1477	FALSE	0	0	0	4	0	FALSE	ACH-000746
GSS_STOMACH	RP11-120D5.1--MID1	2	7	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	26	0.75	0.26	0.0227	0.0795	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	GSS_STOMACH	0.26	0.75	0.1022	FALSE	2	31	0	60	0	FALSE	ACH-000746
GSS_STOMACH	RP11-532F6.4--EXOC2	2	6	RP11-532F6.4	2243	chr6:713888:+	EXOC2	12057	chr6:637861:-	ONLY_REF_SPLICE	YES	79	74	0.09	0.1	0.0227	0.0681	LOCAL_INVERSION:+:-:[18416],RP11-532F6.4->chr6:711533-750729:+,EXOC2->chr6:485133-693117:-,exocyst_complex_component_2	GSS_STOMACH	0.09	0.1	0.0908	TRUE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	SLCO3A1--SV2B	3	2	SLCO3A1	5545	chr15:92459688:+	SV2B	35342	chr15:91795049:+	ONLY_REF_SPLICE	YES	596	11	0.01	0.31	0.0341	0.0227	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,SV2B->chr15:91643180-91844539:+,synaptic_vesicle_glycoprotein_2B	GSS_STOMACH	0.01	0.31	0.0568	FALSE	0	1	0	1	1	FALSE	ACH-000746
GSS_STOMACH	TIMM23B--LINC00843	3	2	TIMM23B	1257	chr10:51371646:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	595	0	0.01	1	0.0341	0.0227	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	GSS_STOMACH	0.01	1	0.0568	FALSE	0	0	0	10	0	FALSE	ACH-000746
GSS_STOMACH	DANCR--CUX1	3	0	DANCR	1530	chr4:53579126:+	CUX1	12487	chr7:101559395:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	GSS_STOMACH	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	EXOC2--ACTG1	3	0	EXOC2	27750	chr6:497412:-	ACTG1	37934	chr17:79479816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	EXOC2->chr6:485133-693117:-,exocyst_complex_component_2,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	GSS_STOMACH	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	HCN2--SHC2	3	0	HCN2	1685	chr19:590577:+	SHC2	22583	chr19:425231:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	HCN2->chr19:589893-617159:+,hyperpolarization_activated_cyclic_nucleotide_gated_potassium_channel_2,SHC2->SHC_(Src_homology_2_domain_containing)_transforming_protein_2,chr19:416583-460996:-	GSS_STOMACH	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	NKD1--ADCY7	1	8	NKD1	2226	chr16:50583466:+	ADCY7	21506	chr16:50321823:+	ONLY_REF_SPLICE	YES	3117	0	0	1	0.0114	0.0908	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	GSS_STOMACH	0	1	0.1022	TRUE	0	1	0	4	1	FALSE	ACH-000746
GSS_STOMACH	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	GSS_STOMACH	1	1	0.0341	TRUE	0	0	0	434	0	FALSE	ACH-000746
GSS_STOMACH	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0341	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	GSS_STOMACH	1	1	0.0341	TRUE	0	0	0	434	0	FALSE	ACH-000746
GSS_STOMACH	RP11-1055B8.3--PCYT2	3	0	RP11-1055B8.3	2479	chr17:79355677:-	PCYT2	12413	chr17:79865733:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	RP11-1055B8.3->chr17:79349801-79359160:-,PCYT2->chr17:79858841-79869340:-,phosphate_cytidylyltransferase_2,_ethanolamine	GSS_STOMACH	1	1	0.0341	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	SHISA9--U91319.1	1	8	SHISA9	7683	chr16:13010672:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	NO	217	1	0.04	0.9	0.0114	0.0908	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	GSS_STOMACH	0.04	0.9	0.1022	FALSE	2	8	0	8	0	FALSE	ACH-000746
GSS_STOMACH	TIMM23--RP11-464F9.1	3	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0341	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	GSS_STOMACH	1	1	0.0341	TRUE	5	8	0	33	0	FALSE	ACH-000746
GSS_STOMACH	RP11-120D5.1--MID1	1	7	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	14	26	0.36	0.24	0.0114	0.0795	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	GSS_STOMACH	0.24	0.36	0.0909	FALSE	0	48	1	163	0	FALSE	ACH-000746
GSS_STOMACH	RP11-397A16.1--TCF4	2	3	RP11-397A16.1	1472	chr18:53388765:+	TCF4	22415	chr18:53252583:-	ONLY_REF_SPLICE	YES	15	206	0.25	0.02	0.0227	0.0341	LOCAL_INVERSION:+:-:[56276],RP11-397A16.1->chr18:53388294-53455992:+,TCF4->chr18:52889562-53332018:-,transcription_factor_4	GSS_STOMACH	0.02	0.25	0.0568	TRUE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	DSCR3--TTC3	2	2	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	71	152	0.05	0.03	0.0227	0.0227	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	GSS_STOMACH	0.03	0.05	0.0454	TRUE	0	9	0	44	1	FALSE	ACH-000746
GSS_STOMACH	RP11-838N2.5--DLGAP1	2	2	RP11-838N2.5	1115	chr18:3284257:+	DLGAP1	32610	chr18:3582246:-	ONLY_REF_SPLICE	YES	328	42	0.01	0.09	0.0227	0.0227	RP11-838N2.5->chr18:3284143-3327290:+,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	GSS_STOMACH	0.01	0.09	0.0454	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	RP11-838N2.5--MYL12B	1	6	RP11-838N2.5	1115	chr18:3284257:+	MYL12B	8095	chr18:3272882:+	ONLY_REF_SPLICE	YES	328	235	0.02	0.03	0.0114	0.0681	LOCAL_REARRANGEMENT:+:[5861],RP11-838N2.5->chr18:3284143-3327290:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	GSS_STOMACH	0.02	0.03	0.0795	TRUE	0	0	0	3	0	FALSE	ACH-000746
GSS_STOMACH	SHISA9--U91319.1	2	2	SHISA9	7683	chr16:13010672:+	U91319.1	24024	chr16:13568067:+	ONLY_REF_SPLICE	YES	217	8	0.02	0.33	0.0227	0.0227	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	GSS_STOMACH	0.02	0.33	0.0454	FALSE	0	1	0	6	0	FALSE	ACH-000746
GSS_STOMACH	SLCO3A1--AC068831.10	2	2	SLCO3A1	1394	chr15:92397318:+	AC068831.10	32633	chr15:91573889:+	ONLY_REF_SPLICE	YES	933	6	0	0.4	0.0227	0.0227	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,AC068831.10->chr15:91565849-91579841:+	GSS_STOMACH	0	0.4	0.0454	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	SMG5--IGSF9	2	2	SMG5	17166	chr1:156222710:-	IGSF9	32211	chr1:159901393:-	ONLY_REF_SPLICE	YES	315	43	0.01	0.09	0.0227	0.0227	SMG5->SMG5_nonsense_mediated_mRNA_decay_factor,chr1:156219015-156252620:-,IGSF9->chr1:159896829-159915386:-,immunoglobulin_superfamily_member_9	GSS_STOMACH	0.01	0.09	0.0454	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	PSKH1--NFATC3	2	1	PSKH1	4241	chr16:67943609:+	NFATC3	25802	chr16:68224671:+	ONLY_REF_SPLICE	YES	41	236	0.07	0.01	0.0227	0.0114	PSKH1->chr16:67927175-67963581:+,protein_serine_kinase_H1,NFATC3->Oncogene{Bushman},chr16:68118654-68263162:+,nuclear_factor_of_activated_T-cells_3	GSS_STOMACH	0.01	0.07	0.0341	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	RNF141--SBF2	2	1	RNF141	7256	chr11:10540581:-	SBF2	20989	chr11:10064528:-	ONLY_REF_SPLICE	YES	258	21	0.01	0.12	0.0227	0.0114	RNF141->chr11:10533225-10562777:-,ring_finger_protein_141,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	GSS_STOMACH	0.01	0.12	0.0341	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	RP11-114H23.1--RP11-114H23.2	1	5	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	2	14	0.75	0.3	0.0114	0.0568	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	GSS_STOMACH	0.3	0.75	0.0682	FALSE	81	155	12	160	0	FALSE	ACH-000746
GSS_STOMACH	RP11-114H23.1--RP11-114H23.2	1	5	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	2	14	0.75	0.3	0.0114	0.0568	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	GSS_STOMACH	0.3	0.75	0.0682	FALSE	5	9	0	20	0	FALSE	ACH-000746
GSS_STOMACH	VTI1A--RP11-57H14.3	2	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	97	0	0.03	1	0.0227	0.0114	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	GSS_STOMACH	0.03	1	0.0341	FALSE	272	151	14	158	0	FALSE	ACH-000746
GSS_STOMACH	ALDH1A2--YBX1	2	0	ALDH1A2	3568	chr15:58712170:-	YBX1	42918	chr1:43149074:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ALDH1A2->aldehyde_dehydrogenase_1_family_member_A2,chr15:58245622-58790065:-,YBX1->Oncogene{Bushman},Y-box_binding_protein_1,chr1:43148098-43168020:+	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	ARHGEF4--BMP4	2	0	ARHGEF4	1077	chr2:131594565:+	BMP4	29765	chr14:54420118:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ARHGEF4->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_4,chr2:131594489-131804836:+,BMP4->bone_morphogenetic_protein_4,chr14:54416454-54425479:-	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	CPSF6--C9orf3	2	0	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	GSS_STOMACH	1	1	0.0227	TRUE	53	99	2	44	0	FALSE	ACH-000746
GSS_STOMACH	CPSF6--FNBP4	2	0	CPSF6	11046	chr12:69656342:+	FNBP4	32288	chr11:47753113:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Muscle_-_Skeletal=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	GSS_STOMACH	1	1	0.0227	TRUE	347	1186	183	220	0	FALSE	ACH-000746
GSS_STOMACH	DTYMK--ATG4B	2	0	DTYMK	1338	chr2:242626069:-	ATG4B	21075	chr2:242606060:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[1885],DTYMK->chr2:242615157-242626406:-,deoxythymidylate_kinase,ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	5	0	TRUE	ACH-000746
GSS_STOMACH	GATS--PILRB	2	0	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	GSS_STOMACH	1	1	0.0227	TRUE	57	41	2	35	0	FALSE	ACH-000746
GSS_STOMACH	KIF26B--SMYD3	2	0	KIF26B	2699	chr1:245319985:+	SMYD3	63393	chr1:245927451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	GSS_STOMACH	1	1	0.0227	TRUE	0	5	0	2	2	TRUE	ACH-000746
GSS_STOMACH	KRT18P59--CHEK1	2	0	KRT18P59	2785	chr11:124984841:+	CHEK1	20034	chr11:125523641:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	KRT18P59->chr11:124983057-124996677:+,keratin_18_pseudogene_59,CHEK1->ArcherDX_panel,FoundationOne_panel,checkpoint_kinase_1,chr11:125495036-125546150:+	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	NOC4L--PTMS	2	0	NOC4L	2218	chr12:132630210:+	PTMS	13871	chr12:6878769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,PTMS->chr12:6874682-6880116:+,parathymosin	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	NUPL2--TNKS	2	0	NUPL2	3987	chr7:23226765:+	TNKS	29929	chr8:9564321:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,TNKS->chr8:9413424-9639856:+,tankyrase	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	RP11-429J17.5--ZNF623	2	0	RP11-429J17.5	1109	chr8:144800953:-	ZNF623	6164	chr8:144732068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_INVERSION:-:+:[64516],RP11-429J17.5->chr8:144800416-144801061:-,ZNF623->chr8:144718183-144735900:+,zinc_finger_protein_623	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	TMLHE--VAMP7	2	0	TMLHE	2332	chrX:154842453:-	VAMP7	21383	chrX:155149477:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,VAMP7->chrX:155110956-155173433:+,chrY:59213962-59276439:+,vesicle_associated_membrane_protein_7	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	TPD52--LAPTM4B	2	0	TPD52	6214	chr8:81083660:-	LAPTM4B	31437	chr8:98817581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	ZFP90--CREBZF	2	0	ZFP90	1245	chr16:68564237:+	CREBZF	23836	chr11:85371641:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ZFP90->ZFP90_zinc_finger_protein,chr16:68563993-68609975:+,CREBZF->CREB/ATF_bZIP_transcription_factor,chr11:85370752-85393951:-	GSS_STOMACH	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	DLGAP1--TGIF1	1	2	DLGAP1	30633	chr18:3534192:-	TGIF1	52716	chr18:3456352:+	ONLY_REF_SPLICE	YES	350	511	0.01	0.01	0.0114	0.0227	LOCAL_INVERSION:-:+:[37621],DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1,TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+	GSS_STOMACH	0.01	0.01	0.0341	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	RP11-532F6.4--EXOC2	1	2	RP11-532F6.4	2243	chr6:713888:+	EXOC2	31898	chr6:532610:-	ONLY_REF_SPLICE	YES	79	823	0.04	0	0.0114	0.0227	LOCAL_INVERSION:+:-:[18416],RP11-532F6.4->chr6:711533-750729:+,EXOC2->chr6:485133-693117:-,exocyst_complex_component_2	GSS_STOMACH	0	0.04	0.0341	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.25	0.0114	0.0227	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GSS_STOMACH	0.25	1	0.0341	TRUE	458	1351	185	561	0	FALSE	ACH-000746
GSS_STOMACH	RP11-838N2.5--DLGAP1	1	2	RP11-838N2.5	1115	chr18:3284257:+	DLGAP1	24524	chr18:3729375:-	ONLY_REF_SPLICE	YES	328	183	0.01	0.02	0.0114	0.0227	RP11-838N2.5->chr18:3284143-3327290:+,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	GSS_STOMACH	0.01	0.02	0.0341	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	RP11-838N2.5--DLGAP1	1	2	RP11-838N2.5	1115	chr18:3284257:+	DLGAP1	36498	chr18:3508659:-	ONLY_REF_SPLICE	YES	328	342	0.01	0.01	0.0114	0.0227	RP11-838N2.5->chr18:3284143-3327290:+,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	GSS_STOMACH	0.01	0.01	0.0341	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	RPS6KB1--VMP1	1	2	RPS6KB1	7326	chr17:57992064:+	VMP1	32885	chr17:57842332:+	ONLY_REF_SPLICE	NO	163	430	0.02	0.01	0.0114	0.0227	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	GSS_STOMACH	0.01	0.02	0.0341	FALSE	0	2	0	2	1	FALSE	ACH-000746
GSS_STOMACH	SF1--GNAS	1	2	SF1	3289	chr11:64543970:-	GNAS	32063	chr20:57470667:+	ONLY_REF_SPLICE	NO	822	1412	0	0	0.0114	0.0227	GTEx_FI:{Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=3,Pituitary=3,Minor_Salivary_Gland=1,Brain_-_Hypothalamus=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	GSS_STOMACH	0	0	0.0341	FALSE	4	13	1	15	0	FALSE	ACH-000746
GSS_STOMACH	AC074117.10--CAB39L	1	1	AC074117.10	2657	chr2:27580769:+	CAB39L	19667	chr13:49951267:-	ONLY_REF_SPLICE	YES	32	38	0.06	0.05	0.0114	0.0114	AC074117.10->chr2:27579113-27590489:+,CAB39L->calcium_binding_protein_39_like,chr13:49882786-50018262:-	GSS_STOMACH	0.05	0.06	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	ATXN7--THOC7	1	1	ATXN7	7042	chr3:63938159:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	NO	23	13	0.08	0.13	0.0114	0.0114	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	GSS_STOMACH	0.08	0.13	0.0228	TRUE	0	3	0	1	1	TRUE	ACH-000746
GSS_STOMACH	C17orf76-AS1--BZW2	1	1	C17orf76-AS1	3309	chr17:16344444:+	BZW2	18660	chr7:16720926:+	ONLY_REF_SPLICE	YES	3870	1830	0	0	0.0114	0.0114	C17orf76-AS1->chr17:16342136-16381992:+,BZW2->basic_leucine_zipper_and_W2_domains_2,chr7:16685756-16746148:+	GSS_STOMACH	0	0	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	CCDC127--PDCD6	1	1	CCDC127	2487	chr5:216844:-	PDCD6	26932	chr5:311408:+	ONLY_REF_SPLICE	NO	118	1323	0.02	0	0.0114	0.0114	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_INVERSION:-:+:[53406],CCDC127->chr5:196986-218330:-,coiled-coil_domain_containing_127,PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6	GSS_STOMACH	0	0.02	0.0228	FALSE	0	0	0	2	0	FALSE	ACH-000746
GSS_STOMACH	CCND1--FGF3	1	1	CCND1	1425	chr11:69456279:+	FGF3	13536	chr11:69631191:-	ONLY_REF_SPLICE	NO	3162	98	0	0.02	0.0114	0.0114	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,FGF3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69624992-69633792:-,fibroblast_growth_factor_3	GSS_STOMACH	0	0.02	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	CSTF3--GLS	1	1	CSTF3	5593	chr11:33163213:-	GLS	41363	chr2:191792032:+	ONLY_REF_SPLICE	YES	157	530	0.01	0	0.0114	0.0114	CSTF3->chr11:33098734-33183917:-,cleavage_stimulation_factor_subunit_3,GLS->chr2:191745553-191830278:+,glutaminase	GSS_STOMACH	0	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	EIF3H--RAD21	1	1	EIF3H	3765	chr8:117767905:-	RAD21	24431	chr8:117879000:-	ONLY_REF_SPLICE	YES	1929	53	0	0.04	0.0114	0.0114	LOCAL_REARRANGEMENT:-:[79010],EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-	GSS_STOMACH	0	0.04	0.0228	FALSE	0	0	0	3	0	FALSE	ACH-000746
GSS_STOMACH	HDAC9--BZW2	1	1	HDAC9	12151	chr7:18535947:+	BZW2	61734	chr7:16705062:+	ONLY_REF_SPLICE	YES	376	529	0.01	0	0.0114	0.0114	HDAC9->chr7:18126572-19042039:+,histone_deacetylase_9,BZW2->basic_leucine_zipper_and_W2_domains_2,chr7:16685756-16746148:+	GSS_STOMACH	0	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	HNRNPA2B1--C11orf58	1	1	HNRNPA2B1	1958	chr7:26240192:-	C11orf58	18797	chr11:16766148:+	ONLY_REF_SPLICE	YES	4236	3833	0	0	0.0114	0.0114	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,C11orf58->chr11:16634679-16778428:+,chromosome_11_open_reading_frame_58	GSS_STOMACH	0	0	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	NOC4L--FBRSL1	1	1	NOC4L	2218	chr12:132630210:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	103	93	0.02	0.02	0.0114	0.0114	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	GSS_STOMACH	0.02	0.02	0.0228	TRUE	0	1	0	10	0	FALSE	ACH-000746
GSS_STOMACH	NOC4L--FBRSL1	1	1	NOC4L	5448	chr12:132633440:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	NO	89	93	0.02	0.02	0.0114	0.0114	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	GSS_STOMACH	0.02	0.02	0.0228	TRUE	4	9	0	12	0	FALSE	ACH-000746
GSS_STOMACH	NOC4L--FBRSL1	1	1	NOC4L	5448	chr12:132633440:+	FBRSL1	23658	chr12:133144067:+	ONLY_REF_SPLICE	NO	89	110	0.02	0.02	0.0114	0.0114	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	GSS_STOMACH	0.02	0.02	0.0228	TRUE	16	9	0	6	0	FALSE	ACH-000746
GSS_STOMACH	PJA1--CCSER1	1	1	PJA1	1422	chrX:68385215:-	CCSER1	29878	chr4:91736913:+	ONLY_REF_SPLICE	NO	40	14	0.05	0.12	0.0114	0.0114	PJA1->chrX:68380694-68385636:-,praja_ring_finger_ubiquitin_ligase_1,CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1	GSS_STOMACH	0.05	0.12	0.0228	TRUE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	PROSC--CHL1	1	1	PROSC	2996	chr8:37623873:+	CHL1	49637	chr3:447178:+	ONLY_REF_SPLICE	YES	291	288	0.01	0.01	0.0114	0.0114	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHL1->Oncogene{Bushman},cell_adhesion_molecule_L1_like,chr3:238279-451090:+	GSS_STOMACH	0.01	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	PROSC--DDB2	1	1	PROSC	2996	chr8:37623873:+	DDB2	13718	chr11:47237887:+	ONLY_REF_SPLICE	NO	291	96	0.01	0.02	0.0114	0.0114	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),DDB2->Oncogene{Bushman},chr11:47236493-47260767:+,damage_specific_DNA_binding_protein_2	GSS_STOMACH	0.01	0.02	0.0228	FALSE	0	0	0	2	0	FALSE	ACH-000746
GSS_STOMACH	PTPRN2--PAXIP1	1	1	PTPRN2	15088	chr7:157691365:-	PAXIP1	36012	chr7:154790494:-	ONLY_REF_SPLICE	YES	196	23	0.01	0.08	0.0114	0.0114	PTPRN2->chr7:157331750-158380480:-,protein_tyrosine_phosphatase,_receptor_type_N2,PAXIP1->PAX_interacting_protein_1,chr7:154735397-154794794:-	GSS_STOMACH	0.01	0.08	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	RP11-108K3.1--GLDN	1	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0114	0.0114	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	GSS_STOMACH	1	1	0.0228	FALSE	1	20	0	46	0	FALSE	ACH-000746
GSS_STOMACH	RP11-17A1.3--PTDSS2	1	1	RP11-17A1.3	6007	chr11:22942195:+	PTDSS2	16301	chr11:460187:+	ONLY_REF_SPLICE	YES	0	12	1	0.14	0.0114	0.0114	RP11-17A1.3->chr11:22850926-22966939:+,PTDSS2->chr11:448268-491393:+,phosphatidylserine_synthase_2	GSS_STOMACH	0.14	1	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	36	1	0.05	0.0114	0.0114	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GSS_STOMACH	0.05	1	0.0228	TRUE	465	1949	224	605	0	FALSE	ACH-000746
GSS_STOMACH	RP11-783K16.14--STIP1	1	1	RP11-783K16.14	1159	chr11:64001666:-	STIP1	11845	chr11:63963117:+	ONLY_REF_SPLICE	YES	1	948	0.67	0	0.0114	0.0114	LOCAL_INVERSION:-:+:[24671],RP11-783K16.14->chr11:63996686-64001824:-,STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1	GSS_STOMACH	0	0.67	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	RPS20--TCF4	1	1	RPS20	1451	chr8:56986619:-	TCF4	23586	chr18:53131368:-	ONLY_REF_SPLICE	NO	4306	317	0	0.01	0.0114	0.0114	RPS20->chr8:56979854-56987069:-,ribosomal_protein_S20,TCF4->chr18:52889562-53332018:-,transcription_factor_4	GSS_STOMACH	0	0.01	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	RPS6KB1--VMP1	1	1	RPS6KB1	1240	chr17:57970686:+	VMP1	28174	chr17:57808782:+	ONLY_REF_SPLICE	YES	184	85	0.01	0.02	0.0114	0.0114	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	GSS_STOMACH	0.01	0.02	0.0228	FALSE	0	1	0	3	1	FALSE	ACH-000746
GSS_STOMACH	SHISA9--CTD-3037G24.3	1	1	SHISA9	7683	chr16:13010672:+	CTD-3037G24.3	21716	chr16:12655003:-	ONLY_REF_SPLICE	NO	217	0	0.01	1	0.0114	0.0114	SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,CTD-3037G24.3->chr16:12654613-12704901:-	GSS_STOMACH	0.01	1	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	SLC1A5--SSRP1	1	1	SLC1A5	5332	chr19:47285640:-	SSRP1	14092	chr11:57102122:-	ONLY_REF_SPLICE	YES	7521	640	0	0	0.0114	0.0114	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,SSRP1->chr11:57093459-57103351:-,structure_specific_recognition_protein_1	GSS_STOMACH	0	0	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	SOX2-OT--FXR1	1	1	SOX2-OT	7662	chr3:180893371:+	FXR1	45184	chr3:180651122:+	ONLY_REF_SPLICE	YES	4	16	0.33	0.11	0.0114	0.0114	LOCAL_REARRANGEMENT:+:[7017],SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+,FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+	GSS_STOMACH	0.11	0.33	0.0228	TRUE	0	0	0	1	0	TRUE	ACH-000746
GSS_STOMACH	TMED10--YLPM1	1	1	TMED10	1277	chr14:75643058:-	YLPM1	19403	chr14:75264283:+	ONLY_REF_SPLICE	YES	1315	64	0	0.03	0.0114	0.0114	TMED10->chr14:75598173-75643334:-,transmembrane_p24_trafficking_protein_10,YLPM1->YLP_motif_containing_1,chr14:75230069-75322244:+	GSS_STOMACH	0	0.03	0.0228	FALSE	0	0	0	1	0	FALSE	ACH-000746
GSS_STOMACH	YWHAE--ABR	1	1	YWHAE	1332	chr17:1303341:-	ABR	23293	chr17:1028702:-	ONLY_REF_SPLICE	YES	2759	4	0	0.33	0.0114	0.0114	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	GSS_STOMACH	0	0.33	0.0228	FALSE	0	2	0	1	0	FALSE	ACH-000746
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	133	35	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.9073	0.5019	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.4092	TRUE	508	994	45	981	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	79	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1329	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1329	TRUE	0	0	0	518	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	60	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	272	1	0.19	0.98	0.8605	0.0717	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.98	0.9322	TRUE	519	3926	326	965	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLEKHB2--TEX41	25	2	PLEKHB2	5988	chr2:131878551:+	TEX41	53816	chr2:145929565:+	ONLY_REF_SPLICE	YES	36	0	0.43	1	0.3585	0.0287	PLEKHB2->chr2:131862420-132111282:+,pleckstrin_homology_domain_containing_B2,TEX41->chr2:145425534-145940216:+,testis_expressed_41_(non-protein_coding)	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.3872	TRUE	0	0	0	1	0	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	24	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3442	0.0287	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3729	FALSE	499	1288	110	792	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	13	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3239	0	0	1	0.1864	0.043	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.2294	FALSE	13	9	0	364	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	12	5	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1721	0.0717	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2438	FALSE	46	201	11	112	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP135--PAICS	12	2	CEP135	13385	chr4:56837574:+	PAICS	38148	chr4:57312861:+	ONLY_REF_SPLICE	YES	30	898	0.32	0.02	0.1721	0.0287	CEP135->centrosomal_protein_135,chr4:56815037-56899529:+,PAICS->chr4:57301907-57327534:+,phosphoribosylaminoimidazole_carboxylase;_phosphoribosylaminoimidazolesuccinocarboxamide_synthase	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.32	0.2008	TRUE	0	0	0	1	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	12	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1721	0.0287	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2008	FALSE	499	1288	110	792	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1721	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1721	TRUE	46	1352	75	139	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1291	0.1577	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2868	FALSE	499	1288	110	792	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	9	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	58	24	0.22	0.4	0.1291	0.1004	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.4	0.2295	TRUE	267	562	48	632	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	9	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	58	26	0.21	0.37	0.1291	0.086	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.37	0.2151	TRUE	267	562	48	632	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	14	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1004	0.2008	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3012	FALSE	499	1288	110	792	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3266	0	0	1	0.1291	0.043	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1721	FALSE	13	9	0	364	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	14	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0.2008	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2582	FALSE	499	1288	110	792	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	14	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0.2008	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2438	FALSE	499	1288	110	792	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--SEPT7	6	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.086	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.086	TRUE	1	1	0	18	1	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0.1434	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1864	FALSE	499	1288	110	792	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	3	5	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0.0717	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1147	TRUE	13	49	2	38	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--NOP58	4	0	C17orf76-AS1	1593	chr17:16342728:+	NOP58	24073	chr2:203160397:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0574	0	C17orf76-AS1->chr17:16342136-16381992:+,NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0574	TRUE	0	0	0	2	0	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	4	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0574	TRUE	0	5	1	24	1	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0.043	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.086	FALSE	515	4851	409	746	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PFKL--MT-ND4L	3	1	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	534	0	0.01	1	0.043	0.0143	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0573	FALSE	0	0	0	33	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	3	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	36	0	0.1	1	0.043	0.0143	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.0573	FALSE	272	151	14	158	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	3	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	FALSE	0	26	0	50	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	FALSE	499	1288	110	792	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	3	0	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	9989	chr5:97257835:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	0	0	0	1	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	3	0	STX18-AS1	2665	chr4:4546634:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.043	TRUE	3	17	0	6	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	2	2	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0.0287	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0574	FALSE	0	24	0	62	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0287	0.0143	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.043	FALSE	16	356	14	466	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	2	1	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0287	0.0143	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.043	TRUE	37	101	7	40	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARGLU1--ING1	2	0	ARGLU1	1592	chr13:107219921:-	ING1	16348	chr13:111371576:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	ARGLU1->arginine_and_glutamate_rich_1,chr13:107194021-107220512:-,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGDIB--RPL17	2	0	ARHGDIB	1192	chr12:15114471:-	RPL17	13918	chr18:47017954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	ARHGDIB->Rho_GDP_dissociation_inhibitor_beta,chr12:15094951-15114662:-,RPL17->chr18:47014851-47018906:-,ribosomal_protein_L17	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--SON	2	0	CPSF6	11046	chr12:69656342:+	SON	32263	chr21:34931536:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SON->SON_DNA_binding_protein,chr21:34914924-34949812:+	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IARS--BUB1	2	0	IARS	1316	chr9:95055723:-	BUB1	60024	chr2:111399811:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase,BUB1->BUB1_mitotic_checkpoint_serine/threonine_kinase,Oncogene{Bushman},chr2:111395275-111435691:-	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF169--DYNC1LI1	2	0	ZNF169	3852	chr9:97055351:+	DYNC1LI1	16694	chr3:32587457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	ZNF169->chr9:97021593-97063736:+,zinc_finger_protein_169,DYNC1LI1->chr3:32567463-32612366:-,dynein_cytoplasmic_1_light_intermediate_chain_1	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF252P--PLA2G4B	2	0	ZNF252P	7765	chr8:146219865:-	PLA2G4B	20647	chr15:42129973:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	ZNF252P->chr8:146198975-146228281:-,zinc_finger_protein_252,_pseudogene,PLA2G4B->chr15:42120283-42140345:+,phospholipase_A2_group_IVB	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0143	0.043	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0573	FALSE	467	2173	244	435	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATXN7--THOC7	1	1	ATXN7	3640	chr3:63884173:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	YES	1	12	0.67	0.14	0.0143	0.0143	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.67	0.0286	TRUE	0	2	0	5	2	TRUE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COMMD1--B3GNT2	1	1	COMMD1	6915	chr2:62228117:+	B3GNT2	17072	chr2:62449347:+	ONLY_REF_SPLICE	NO	57	3	0.03	0.4	0.0143	0.0143	NEIGHBORS[48866],COMMD1->chr2:62115859-62374382:+,copper_metabolism_domain_containing_1,B3GNT2->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_2,chr2:62423248-62451866:+	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.4	0.0286	FALSE	1	6	2	5	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	5	0	0.29	1	0.0143	0.0143	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.0286	FALSE	0	48	1	163	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG5--PTMA	1	1	SNHG5	1939	chr6:86387513:-	PTMA	13631	chr2:232576058:+	ONLY_REF_SPLICE	YES	2157	5999	0	0	0.0143	0.0143	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0286	FALSE	0	0	0	1	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TANK--PSMD14	1	1	TANK	1156	chr2:161993574:+	PSMD14	25107	chr2:162172948:+	ONLY_REF_SPLICE	YES	90	326	0.02	0.01	0.0143	0.0143	NEIGHBORS[71817],TANK->TRAF_family_member_associated_NFKB_activator,chr2:161993419-162092732:+,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0286	FALSE	0	0	0	1	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFAS1--TXLNG2P	1	1	ZFAS1	2031	chr20:47895745:+	TXLNG2P	13607	chrY:21751407:+	ONLY_REF_SPLICE	NO	731	86	0	0.02	0.0143	0.0143	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,TXLNG2P->chrY:21729199-21768160:+	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0286	FALSE	0	0	0	1	0	FALSE	ACH-000583
MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF736--AC093323.3	1	1	ZNF736	8361	chr7:63797360:+	AC093323.3	21055	chr4:6676720:+	ONLY_REF_SPLICE	NO	24	29	0.08	0.06	0.0143	0.0143	ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,AC093323.3->chr4:6675178-6677774:+	MC116_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.08	0.0286	TRUE	0	0	0	1	0	FALSE	ACH-000583
BFTC905_URINARY_TRACT	TIMM23B--LINC00843	95	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	1.0822	0.2506	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BFTC905_URINARY_TRACT	0.98	1	1.3328	TRUE	508	994	45	981	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	82	35	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	11	1	0.91	0.99	0.9341	0.3987	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.91	0.99	1.3328	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	PIK3CB--CLSTN2	61	24	PIK3CB	1244	chr3:138553537:-	CLSTN2	36406	chr3:140122471:+	ONLY_REF_SPLICE	YES	11	0	0.89	1	0.6949	0.2734	PIK3CB->ArcherDX_panel,FoundationOne_panel,chr3:138372860-138553780:-,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_beta,CLSTN2->calsyntenin_2,chr3:139654027-140296239:+	BFTC905_URINARY_TRACT	0.89	1	0.9683	TRUE	0	0	0	1	0	TRUE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	30	124	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	3886	1	0.04	0.99	0.3417	1.4125	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.04	0.99	1.7542	FALSE	344	827	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TN	57	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6493	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC905_URINARY_TRACT	1	1	0.6493	FALSE	369	2501	205	193	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND6--MT-TE	55	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6265	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC905_URINARY_TRACT	1	1	0.6265	FALSE	499	1288	110	792	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	10	178	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	17	3	0.92	0.98	0.1139	2.0277	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.92	0.98	2.1416	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	11	172	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	9	0	0.95	1	0.1253	1.9593	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.95	1	2.0846	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	7	178	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	17	0	0.92	1	0.0797	2.0277	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.92	1	2.1074	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	6	178	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	19	0	0.91	1	0.0683	2.0277	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.91	1	2.096	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	19	124	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	3	0.97	0.98	0.2164	1.4125	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.97	0.98	1.6289	FALSE	344	821	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	5	178	MT-ND4	1213	chrM:10972:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	YES	14	3	0.93	0.98	0.057	2.0277	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.93	0.98	2.0847	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	4	177	MT-ND4	1180	chrM:10939:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	NO	15	0	0.92	1	0.0456	2.0163	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.92	1	2.0619	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	RP11-993B23.3--TAF1D	42	25	RP11-993B23.3	2495	chr12:28122449:+	TAF1D	15387	chr11:93466568:-	INCL_NON_REF_SPLICE	YES	17	236	0.8	0.22	0.4784	0.2848	RP11-993B23.3->chr12:28111450-28122746:+,TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-	BFTC905_URINARY_TRACT	0.22	0.8	0.7632	TRUE	0	0	0	1	0	TRUE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	179	MT-ND4	1285	chrM:11044:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	14	3	0.93	0.98	0.0342	2.0391	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.93	0.98	2.0733	FALSE	344	827	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	179	MT-ND4	1222	chrM:10981:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	11	0	0.94	1	0.0342	2.0391	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.94	1	2.0733	FALSE	344	827	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	178	MT-ND4	1209	chrM:10968:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	15	3	0.92	0.98	0.0342	2.0277	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.92	0.98	2.0619	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	5	167	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	8	2	0.96	0.99	0.057	1.9024	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.96	0.99	1.9594	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	4	165	MT-ND4	1110	chrM:10869:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	8	3	0.95	0.98	0.0456	1.8796	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.95	0.98	1.9252	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	169	MT-ND4	1122	chrM:10881:+	MT-ND4L	5515	chrM:10606:+	INCL_NON_REF_SPLICE	YES	8	3	0.96	0.98	0.0342	1.9252	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.96	0.98	1.9594	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	165	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	7	3	0.96	0.98	0.0342	1.8796	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.96	0.98	1.9138	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	TIMM23--RP11-464F9.1	42	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	182	3	0.19	0.94	0.4784	0.0228	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BFTC905_URINARY_TRACT	0.19	0.94	0.5012	TRUE	519	3926	326	965	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	28	54	MT-CO3	1153	chrM:9359:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	9	47	0.9	0.64	0.319	0.6151	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.64	0.9	0.9341	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	12	116	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	8	2	0.94	0.98	0.1367	1.3214	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.94	0.98	1.4581	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	9	119	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	15	1	0.9	0.99	0.1025	1.3556	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.9	0.99	1.4581	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	139	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	4	3	0.97	0.98	0.0342	1.5834	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.97	0.98	1.6176	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	28	35	MT-ND4	1214	chrM:10973:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12	1	0.84	0.98	0.319	0.3987	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.84	0.98	0.7177	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	5	119	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	27	1	0.82	0.99	0.057	1.3556	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.82	0.99	1.4126	FALSE	344	827	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	127	MT-ND4	1301	chrM:11060:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	22	2	0.86	0.98	0.0342	1.4467	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.86	0.98	1.4809	FALSE	344	827	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	21	53	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	6	47	0.93	0.61	0.2392	0.6037	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.61	0.93	0.8429	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	125	MT-ND4	1178	chrM:10937:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	15	2	0.9	0.98	0.0342	1.4239	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.9	0.98	1.4581	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	4	119	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	20	1	0.86	0.99	0.0456	1.3556	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.86	0.99	1.4012	FALSE	344	827	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	123	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	20	1	0.86	0.99	0.0342	1.4012	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.86	0.99	1.4354	FALSE	344	827	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TN	28	22	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.319	0.2506	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC905_URINARY_TRACT	1	1	0.5696	FALSE	369	2501	205	193	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	4	114	MT-ND4	1151	chrM:10910:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	9	1	0.93	0.99	0.0456	1.2986	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.93	0.99	1.3442	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	4	109	MT-ND4	1220	chrM:10979:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	11	1	0.91	0.99	0.0456	1.2417	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.91	0.99	1.2873	FALSE	344	827	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	RP11-680G10.1--GSE1	30	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	30	1	0.52	0.3417	0.0342	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BFTC905_URINARY_TRACT	0.52	1	0.3759	TRUE	465	1949	224	605	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	13	69	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	NO	14	0	0.85	1	0.1481	0.786	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.85	1	0.9341	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	22	31	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	17	1	0.76	0.98	0.2506	0.3531	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.76	0.98	0.6037	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	AC024560.3--RP11-849I19.1	28	6	AC024560.3	6501	chr3:197346611:-	RP11-849I19.1	19917	chr18:76737429:-	ONLY_REF_SPLICE	YES	35	0	0.49	1	0.319	0.0683	AC024560.3->chr3:197305084-197354777:-,RP11-849I19.1->chr18:76736555-76739074:-	BFTC905_URINARY_TRACT	0.49	1	0.3873	TRUE	0	0	0	1	0	TRUE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND6--MT-TE	29	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3304	0.0228	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC905_URINARY_TRACT	1	1	0.3532	FALSE	499	1288	110	792	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TN	23	24	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.262	0.2734	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC905_URINARY_TRACT	1	1	0.5354	FALSE	369	2501	205	193	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	28	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.319	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	1	1	0.319	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	6	85	MT-ND4	1231	chrM:10990:+	MT-ND4L	5632	chrM:10723:+	INCL_NON_REF_SPLICE	YES	13	1	0.88	0.99	0.0683	0.9683	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.88	0.99	1.0366	FALSE	344	827	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	11	64	MT-CO3	1322	chrM:9528:+	MT-ATP6	5185	chrM:8927:+	INCL_NON_REF_SPLICE	YES	12	148	0.86	0.34	0.1253	0.7291	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.34	0.86	0.8544	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	4	89	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	18	1	0.84	0.99	0.0456	1.0138	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.84	0.99	1.0594	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	14	47	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	340	1	0.15	0.98	0.1595	0.5354	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.15	0.98	0.6949	FALSE	344	827	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	AC104389.28--HBE1	20	22	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	15	0	0.74	1	0.2278	0.2506	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	BFTC905_URINARY_TRACT	0.74	1	0.4784	TRUE	0	48	0	65	48	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	13	50	MT-CO3	1083	chrM:9289:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	2	32	0.97	0.66	0.1481	0.5696	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.66	0.97	0.7177	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	90	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	11	1	0.89	0.99	0.0342	1.0252	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.89	0.99	1.0594	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	4	84	MT-ND4	1144	chrM:10903:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	9	1	0.91	0.99	0.0456	0.9569	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.91	0.99	1.0025	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	9	61	MT-CO3	1205	chrM:9411:+	MT-ATP6	5179	chrM:8921:+	INCL_NON_REF_SPLICE	YES	20	151	0.78	0.32	0.1025	0.6949	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.32	0.78	0.7974	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	RP11-993B23.3--TAF1D	17	29	RP11-993B23.3	2788	chr12:28122742:+	TAF1D	15192	chr11:93466763:-	INCL_NON_REF_SPLICE	YES	0	228	1	0.17	0.1937	0.3304	RP11-993B23.3->chr12:28111450-28122746:+,TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-	BFTC905_URINARY_TRACT	0.17	1	0.5241	TRUE	0	0	0	1	0	TRUE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	10	53	MT-CO3	1126	chrM:9332:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	2	39	0.97	0.62	0.1139	0.6037	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.62	0.97	0.7176	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	10	52	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	2	38	0.97	0.62	0.1139	0.5924	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.62	0.97	0.7063	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	4	75	MT-ND4	1112	chrM:10871:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	8	1	0.91	0.99	0.0456	0.8544	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.91	0.99	0.9	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	7	56	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	20	47	0.76	0.57	0.0797	0.6379	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.57	0.76	0.7176	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND6--MT-TE	18	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.205	0.1367	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC905_URINARY_TRACT	0.94	1	0.3417	FALSE	499	1288	110	792	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TC	21	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2392	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BFTC905_URINARY_TRACT	1	1	0.2392	FALSE	462	80	0	856	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TN	21	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2392	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC905_URINARY_TRACT	1	1	0.2392	FALSE	369	2501	205	193	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TN	6	57	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0683	0.6493	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC905_URINARY_TRACT	1	1	0.7176	FALSE	369	2501	205	193	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	5	60	MT-CO3	1220	chrM:9426:+	MT-ATP6	5242	chrM:8984:+	INCL_NON_REF_SPLICE	YES	14	71	0.82	0.48	0.057	0.6835	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.48	0.82	0.7405	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	14	24	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	4	1	0.9	0.97	0.1595	0.2734	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.9	0.97	0.4329	FALSE	344	821	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	9	44	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	15	1	0.78	0.98	0.1025	0.5012	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.78	0.98	0.6037	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	4	63	MT-CO3	1220	chrM:9426:+	MT-ATP6	4971	chrM:8713:+	INCL_NON_REF_SPLICE	YES	14	710	0.83	0.09	0.0456	0.7177	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.09	0.83	0.7633	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	6	55	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	20	38	0.75	0.62	0.0683	0.6265	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.62	0.75	0.6948	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	14	23	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	20	1	0.65	0.97	0.1595	0.262	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.65	0.97	0.4215	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TC	19	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2164	0.0114	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BFTC905_URINARY_TRACT	1	1	0.2278	FALSE	462	80	0	856	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	8	44	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	39	0.98	0.57	0.0911	0.5012	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.57	0.98	0.5923	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	17	8	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	6	2	0.81	0.93	0.1937	0.0911	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.81	0.93	0.2848	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	10	35	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	15	1	0.75	0.98	0.1139	0.3987	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.75	0.98	0.5126	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	5	53	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	6	47	0.91	0.55	0.057	0.6037	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.55	0.91	0.6607	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	6	49	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	2	28	0.96	0.66	0.0683	0.5582	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.66	0.96	0.6265	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TN	12	25	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1367	0.2848	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC905_URINARY_TRACT	1	1	0.4215	FALSE	369	2501	205	193	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	3	60	MT-CO3	1216	chrM:9422:+	MT-ATP6	5192	chrM:8934:+	INCL_NON_REF_SPLICE	YES	21	147	0.75	0.3	0.0342	0.6835	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.3	0.75	0.7177	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	4	56	MT-CO3	1123	chrM:9329:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	2	32	0.97	0.65	0.0456	0.6379	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.65	0.97	0.6835	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	3	59	MT-CO3	1140	chrM:9346:+	MT-ATP6	4937	chrM:8679:+	INCL_NON_REF_SPLICE	YES	6	649	0.91	0.09	0.0342	0.6721	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.09	0.91	0.7063	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	6	46	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	1	77	0.98	0.4	0.0683	0.524	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.4	0.98	0.5923	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	4	53	MT-CO3	1105	chrM:9311:+	MT-ATP6	5163	chrM:8905:+	INCL_NON_REF_SPLICE	YES	2	155	0.97	0.27	0.0456	0.6037	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.27	0.97	0.6493	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	4	52	MT-CO3	1123	chrM:9329:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	47	0.97	0.54	0.0456	0.5924	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.54	0.97	0.638	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	5	48	MT-CO3	1072	chrM:9278:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	1	6	0.98	0.9	0.057	0.5468	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.9	0.98	0.6038	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	3	56	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	NO	5	134	0.92	0.31	0.0342	0.6379	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.31	0.92	0.6721	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	6	44	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	20	1	0.71	0.98	0.0683	0.5012	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.71	0.98	0.5695	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	12	19	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	6	2	0.84	0.94	0.1367	0.2164	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.84	0.94	0.3531	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	5	46	MT-CO3	1075	chrM:9281:+	MT-ATP6	5242	chrM:8984:+	INCL_NON_REF_SPLICE	YES	1	71	0.98	0.42	0.057	0.524	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.42	0.98	0.581	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	54	MT-ND4	1248	chrM:11007:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	YES	14	1	0.8	0.98	0.0342	0.6151	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.8	0.98	0.6493	FALSE	344	827	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	3	53	MT-CO3	1149	chrM:9355:+	MT-ATP6	5315	chrM:9057:+	INCL_NON_REF_SPLICE	YES	9	37	0.86	0.6	0.0342	0.6037	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.6	0.86	0.6379	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	3	53	MT-CO3	1150	chrM:9356:+	MT-ATP6	5349	chrM:9091:+	INCL_NON_REF_SPLICE	YES	9	24	0.86	0.7	0.0342	0.6037	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.7	0.86	0.6379	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TN	16	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1823	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC905_URINARY_TRACT	1	1	0.1823	FALSE	369	2501	205	193	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	4	44	MT-ND4	1201	chrM:10960:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	18	1	0.73	0.98	0.0456	0.5012	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.73	0.98	0.5468	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	4	44	MT-ND4	1209	chrM:10968:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	15	1	0.76	0.98	0.0456	0.5012	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.76	0.98	0.5468	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	3	47	MT-CO3	1088	chrM:9294:+	MT-ATP6	5317	chrM:9059:+	INCL_NON_REF_SPLICE	YES	2	37	0.96	0.57	0.0342	0.5354	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.57	0.96	0.5696	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	14	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	9	0	0.65	1	0.1595	0.0342	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.65	1	0.1937	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	6	35	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	17	1	0.71	0.98	0.0683	0.3987	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.71	0.98	0.467	FALSE	344	827	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	47	MT-ND4	1544	chrM:11303:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	432	1	0.1	0.98	0.0342	0.5354	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.1	0.98	0.5696	FALSE	344	827	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TN	4	43	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0.4898	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC905_URINARY_TRACT	1	1	0.5354	FALSE	369	2501	205	193	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	5	35	MT-ND4	1170	chrM:10929:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	13	1	0.75	0.98	0.057	0.3987	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.75	0.98	0.4557	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TC	13	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1481	0.0342	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BFTC905_URINARY_TRACT	1	1	0.1823	FALSE	462	80	0	856	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	4	38	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	2	4	0.95	0.91	0.0456	0.4329	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.91	0.95	0.4785	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	4	38	MT-CO3	1063	chrM:9269:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	47	0.95	0.47	0.0456	0.4329	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.47	0.95	0.4785	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	39	MT-ND4	1131	chrM:10890:+	MT-ND4L	5657	chrM:10748:+	INCL_NON_REF_SPLICE	YES	10	1	0.81	0.98	0.0342	0.4443	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.81	0.98	0.4785	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	37	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	389	1	0.09	0.98	0.0342	0.4215	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.09	0.98	0.4557	FALSE	344	827	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	11	5	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	3	1	0.84	0.94	0.1253	0.057	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.84	0.94	0.1823	FALSE	344	821	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	12	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1367	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	1	1	0.1367	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	11	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.1253	0.0456	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BFTC905_URINARY_TRACT	0.94	1	0.1709	FALSE	515	4851	409	746	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	10	7	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	5	1	0.77	0.94	0.1139	0.0797	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.77	0.94	0.1936	FALSE	344	821	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	35	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	11	1	0.78	0.97	0.0342	0.3987	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.78	0.97	0.4329	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	AC104389.28--HBE1	6	22	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	15	0	0.65	1	0.0683	0.2506	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	BFTC905_URINARY_TRACT	0.65	1	0.3189	TRUE	0	35	0	55	35	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	4	30	MT-CO3	1036	chrM:9242:+	MT-ATP6	5156	chrM:8898:+	INCL_NON_REF_SPLICE	YES	0	156	1	0.18	0.0456	0.3417	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.18	1	0.3873	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	33	MT-ND4	1170	chrM:10929:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	13	1	0.73	0.97	0.0342	0.3759	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.73	0.97	0.4101	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND1--MT-TL1	11	0	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1253	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	BFTC905_URINARY_TRACT	1	1	0.1253	FALSE	210	95	5	49	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	30	MT-ND4	1114	chrM:10873:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8	1	0.8	0.97	0.0342	0.3417	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.8	0.97	0.3759	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	AP000525.9--LA16c-60G3.6	10	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	25	0	0.31	1	0.1139	0.0114	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	BFTC905_URINARY_TRACT	0.31	1	0.1253	TRUE	0	42	0	133	42	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	29	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	4	1	0.89	0.97	0.0342	0.3304	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.89	0.97	0.3646	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TN	3	28	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.319	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC905_URINARY_TRACT	1	1	0.3532	FALSE	369	2501	205	193	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TN	10	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1139	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC905_URINARY_TRACT	1	1	0.1139	FALSE	369	2501	205	193	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	4	23	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	18	1	0.6	0.96	0.0456	0.262	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.6	0.96	0.3076	FALSE	344	826	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	4	23	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	19	1	0.59	0.96	0.0456	0.262	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.59	0.96	0.3076	FALSE	344	827	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	5	17	MT-CO3	1123	chrM:9329:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	YES	2	2	0.92	0.92	0.057	0.1937	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.92	0.92	0.2507	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	3	24	MT-CO3	1020	chrM:9226:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	39	1	0.41	0.0342	0.2734	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.41	1	0.3076	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	6	12	MT-CO3	1191	chrM:9397:+	MT-ATP6	5438	chrM:9180:+	INCL_NON_REF_SPLICE	YES	16	2	0.53	0.9	0.0683	0.1367	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.53	0.9	0.205	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	RP11-123O10.4--GRIP1	9	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1025	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BFTC905_URINARY_TRACT	1	1	0.1025	FALSE	416	2512	207	587	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND6--MT-TE	4	19	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0456	0.2164	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC905_URINARY_TRACT	0.92	1	0.262	FALSE	499	1288	110	792	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND6--MT-TE	4	19	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0456	0.2164	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC905_URINARY_TRACT	0.92	1	0.262	FALSE	499	1288	110	792	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	22	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	19	0	0.57	1	0.0342	0.2506	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.57	1	0.2848	FALSE	344	827	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	3	22	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	11	0	0.69	1	0.0342	0.2506	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.69	1	0.2848	FALSE	344	827	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	PCAT1--RP11-382A18.2	8	2	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0911	0.0228	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	BFTC905_URINARY_TRACT	1	1	0.1139	TRUE	4	84	1	46	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	3	20	MT-CO3	1092	chrM:9298:+	MT-ATP6	5414	chrM:9156:+	INCL_NON_REF_SPLICE	YES	2	2	0.92	0.92	0.0342	0.2278	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.92	0.92	0.262	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND6--MT-TE	4	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0.1595	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC905_URINARY_TRACT	1	1	0.2051	FALSE	499	1288	110	792	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	RP11-120D5.1--MID1	7	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	11	0.82	0.45	0.0797	0.0228	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	BFTC905_URINARY_TRACT	0.45	0.82	0.1025	FALSE	16	356	14	466	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	6	5	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	47	1	0.19	0.0683	0.057	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.19	1	0.1253	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	7	1	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	1	1	0.89	0.89	0.0797	0.0114	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.89	0.89	0.0911	FALSE	344	821	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	CTD-2006C1.2--TMPRSS11A	5	7	CTD-2006C1.2	3469	chr19:12112637:+	TMPRSS11A	20610	chr4:68812289:-	ONLY_REF_SPLICE	YES	75	0	0.14	1	0.057	0.0797	CTD-2006C1.2->chr19:12098432-12157090:+,TMPRSS11A->chr4:68775103-68829858:-,transmembrane_protease,_serine_11A	BFTC905_URINARY_TRACT	0.14	1	0.1367	TRUE	0	0	0	1	0	TRUE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	6	2	MT-CO3	1158	chrM:9364:+	MT-ATP6	5461	chrM:9203:+	INCL_NON_REF_SPLICE	YES	11	0	0.42	1	0.0683	0.0228	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.42	1	0.0911	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	RPSAP52--HMGA2	6	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	2	514	0.8	0.02	0.0683	0.0228	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	BFTC905_URINARY_TRACT	0.02	0.8	0.0911	FALSE	0	59	0	125	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TN	6	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0683	0.0114	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC905_URINARY_TRACT	1	1	0.0797	FALSE	369	2501	205	193	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	6	0	MT-CO3	1063	chrM:9269:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0683	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	1	1	0.0683	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND6--MT-TE	3	12	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0342	0.1367	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC905_URINARY_TRACT	0.88	1	0.1709	FALSE	499	1288	110	792	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0683	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC905_URINARY_TRACT	1	1	0.0683	FALSE	499	1288	110	792	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TN	6	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0683	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC905_URINARY_TRACT	1	1	0.0683	FALSE	369	2501	205	193	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	4	7	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	16	1	0.41	0.92	0.0456	0.0797	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.41	0.92	0.1253	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	4	5	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	2	1	0.82	0.9	0.0456	0.057	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	0.82	0.9	0.1026	FALSE	344	821	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	CUL2--RP11-297A16.2	5	0	CUL2	1213	chr10:35379358:-	RP11-297A16.2	32735	chr10:35389988:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0	LOCAL_REARRANGEMENT:-:[7364],CUL2->chr10:35297479-35379570:-,cullin_2,RP11-297A16.2->chr10:35386934-35415948:-	BFTC905_URINARY_TRACT	1	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TC	4	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0.0456	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BFTC905_URINARY_TRACT	1	1	0.0912	FALSE	462	80	0	856	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	3	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	6	1	0.6	0.9	0.0342	0.0683	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.6	0.9	0.1025	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	3	6	MT-CO3	1132	chrM:9338:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	2	1	0.82	0.9	0.0342	0.0683	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.82	0.9	0.1025	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	RP11-114H23.1--RP11-114H23.2	4	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0456	0.0114	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	BFTC905_URINARY_TRACT	0.83	1	0.057	FALSE	81	155	12	160	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	4	0	MT-CO3	1032	chrM:9238:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	1	1	0.0456	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	1	1	0.0456	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND1--MT-TL1	4	0	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	BFTC905_URINARY_TRACT	1	1	0.0456	FALSE	210	95	5	49	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BFTC905_URINARY_TRACT	1	1	0.0456	FALSE	344	821	44	306	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND6--MT-TE	3	4	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0342	0.0456	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC905_URINARY_TRACT	0.88	1	0.0798	FALSE	499	1288	110	792	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	3	3	MT-CO3	1068	chrM:9274:+	MT-ATP6	5439	chrM:9181:+	INCL_NON_REF_SPLICE	YES	1	2	0.86	0.75	0.0342	0.0342	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.75	0.86	0.0684	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-CO3--MT-ATP6	3	3	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	16	0	0.27	1	0.0342	0.0342	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BFTC905_URINARY_TRACT	0.27	1	0.0684	FALSE	189	492	56	216	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0.0342	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BFTC905_URINARY_TRACT	1	1	0.0684	FALSE	462	80	0	856	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	RP11-680G10.1--GSE1	3	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	16	1	0.27	0.0342	0.0342	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BFTC905_URINARY_TRACT	0.27	1	0.0684	TRUE	458	1351	185	561	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	CTD-2008L17.1--RP11-456O19.2	2	5	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	NO	1	0	0.88	1	0.0228	0.057	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	BFTC905_URINARY_TRACT	0.88	1	0.0798	FALSE	20	187	4	79	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	DLG1--BDH1	3	0	DLG1	5122	chr3:197009550:-	BDH1	51039	chr3:197260432:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0342	0	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Thyroid=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9]},GTEx_v2:{count=6;pct=0.07%;dist=Brain_-_Frontal_Cortex_(BA9)=1,Thyroid=1,Pituitary=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component,BDH1->3-hydroxybutyrate_dehydrogenase,_type_1,chr3:197236654-197300194:-	BFTC905_URINARY_TRACT	1	1	0.0342	TRUE	0	0	0	1	0	TRUE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC905_URINARY_TRACT	1	1	0.0342	FALSE	499	1288	110	792	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC905_URINARY_TRACT	1	1	0.0342	FALSE	499	1288	110	792	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC905_URINARY_TRACT	1	1	0.0342	FALSE	499	1288	110	792	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BFTC905_URINARY_TRACT	1	1	0.0342	FALSE	499	1288	110	792	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	MT-TA--MT-TN	3	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0342	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BFTC905_URINARY_TRACT	1	1	0.0342	FALSE	369	2501	205	193	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	CTD-2008L17.1--RP11-456O19.2	2	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0228	0.0228	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	BFTC905_URINARY_TRACT	0.8	1	0.0456	FALSE	33	240	4	98	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	AC104389.28--HBE1	2	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	BFTC905_URINARY_TRACT	1	1	0.0228	TRUE	0	16	0	53	13	FALSE	ACH-000802
BFTC905_URINARY_TRACT	NUDT1--HACE1	2	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	BFTC905_URINARY_TRACT	1	1	0.0228	TRUE	1	20	0	20	17	FALSE	ACH-000802
BFTC905_URINARY_TRACT	PROSC--SRSF1	2	0	PROSC	2996	chr8:37623873:+	SRSF1	14701	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0228	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Breast=[count:2=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=3,Brain_-_Hippocampus=1,Thyroid=1,Adipose_-_Subcutaneous=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	BFTC905_URINARY_TRACT	1	1	0.0228	TRUE	6	2	0	9	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0114	0.0456	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BFTC905_URINARY_TRACT	0.83	1	0.057	FALSE	407	2205	196	549	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	NDUFV3--U2AF1	1	1	NDUFV3	5809	chr21:44317157:+	U2AF1	26761	chr21:44515853:-	ONLY_REF_SPLICE	NO	65	434	0.03	0	0.0114	0.0114	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Substantia_nigra=1},NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	BFTC905_URINARY_TRACT	0	0.03	0.0228	FALSE	0	5	0	8	0	FALSE	ACH-000802
BFTC905_URINARY_TRACT	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	10409	chr12:66232299:+	ONLY_REF_SPLICE	NO	2	410	0.5	0	0.0114	0.0114	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	BFTC905_URINARY_TRACT	0	0.5	0.0228	FALSE	0	2	0	7	0	FALSE	ACH-000802
HS834T_FIBROBLAST	COL1A1--FN1	329	53	COL1A1	12966	chr17:48266809:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	13822	8064	0.03	0.05	4.1881	0.6747	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS834T_FIBROBLAST	0.03	0.05	4.8628	TRUE	0	0	0	17	0	FALSE	ACH-000275
HS834T_FIBROBLAST	FN1--COL1A1	308	5	FN1	36954	chr2:216243980:-	COL1A1	69586	chr17:48264124:-	INCL_NON_REF_SPLICE	YES	12103	12208	0.03	0.02	3.9208	0.0636	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS834T_FIBROBLAST	0.02	0.03	3.9844	TRUE	0	0	0	13	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--COL6A1	150	5	COL1A1	6491	chr17:48273284:-	COL6A1	32210	chr21:47414081:+	ONLY_REF_SPLICE	YES	14367	3177	0.01	0.05	1.9095	0.0636	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS834T_FIBROBLAST	0.01	0.05	1.9731	TRUE	0	1	0	5	0	FALSE	ACH-000275
HS834T_FIBROBLAST	TIMM23B--LINC00843	88	36	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1202	0.4583	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS834T_FIBROBLAST	1	1	1.5785	TRUE	508	994	45	981	0	FALSE	ACH-000275
HS834T_FIBROBLAST	OR51S1--TP53I11	72	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9166	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HS834T_FIBROBLAST	1	1	0.9166	TRUE	402	216	10	229	0	FALSE	ACH-000275
HS834T_FIBROBLAST	TIMM23--RP11-464F9.1	42	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	210	3	0.18	0.94	0.5347	0.0382	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS834T_FIBROBLAST	0.18	0.94	0.5729	TRUE	519	3926	326	965	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--COL6A1	32	7	COL1A1	12996	chr17:48266779:-	COL6A1	33574	chr21:47417636:+	INCL_NON_REF_SPLICE	YES	12674	2565	0	0.01	0.4074	0.0891	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS834T_FIBROBLAST	0	0.01	0.4965	TRUE	0	6	0	4	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--FN1	3	89	COL1A1	14310	chr17:48265465:-	FN1	22230	chr2:216300791:-	INCL_NON_REF_SPLICE	YES	12680	0	0.01	1	0.0382	1.133	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS834T_FIBROBLAST	0.01	1	1.1712	TRUE	0	0	0	7	0	FALSE	ACH-000275
HS834T_FIBROBLAST	MT-ND6--MT-TE	23	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2928	0.0509	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS834T_FIBROBLAST	1	1	0.3437	FALSE	499	1288	110	792	0	FALSE	ACH-000275
HS834T_FIBROBLAST	MT-ND6--MT-TE	22	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2801	0.0509	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS834T_FIBROBLAST	1	1	0.331	FALSE	499	1288	110	792	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--COL6A1	18	17	COL1A1	12547	chr17:48267228:-	COL6A1	29388	chr21:47410903:+	INCL_NON_REF_SPLICE	YES	15351	1083	0	0.03	0.2291	0.2164	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS834T_FIBROBLAST	0	0.03	0.4455	TRUE	0	6	0	3	0	FALSE	ACH-000275
HS834T_FIBROBLAST	KANSL1--ARL17B	18	11	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	25	21	0.54	0.58	0.2291	0.14	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HS834T_FIBROBLAST	0.54	0.58	0.3691	TRUE	181	1564	124	196	0	FALSE	ACH-000275
HS834T_FIBROBLAST	MT-TA--MT-TC	20	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2546	0.0382	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS834T_FIBROBLAST	1	1	0.2928	FALSE	462	80	0	856	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--FN1	4	51	COL1A1	12718	chr17:48267057:-	FN1	22541	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	15422	8064	0	0.01	0.0509	0.6492	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS834T_FIBROBLAST	0	0.01	0.7001	TRUE	0	0	0	17	0	FALSE	ACH-000275
HS834T_FIBROBLAST	EEF1DP3--FRY	14	8	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	1	1	0.96	0.96	0.1782	0.1018	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS834T_FIBROBLAST	0.96	0.96	0.28	FALSE	20	24	2	21	0	FALSE	ACH-000275
HS834T_FIBROBLAST	MT-ND6--MT-TE	13	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.1655	0.1528	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS834T_FIBROBLAST	0.93	1	0.3183	FALSE	499	1288	110	792	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--COL6A1	8	19	COL1A1	12984	chr17:48266791:-	COL6A1	29388	chr21:47410903:+	INCL_NON_REF_SPLICE	YES	12865	1083	0	0.02	0.1018	0.2419	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS834T_FIBROBLAST	0	0.02	0.3437	TRUE	0	6	0	3	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--FN1	6	27	COL1A1	13456	chr17:48266319:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	12680	13738	0	0	0.0764	0.3437	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS834T_FIBROBLAST	0	0	0.4201	TRUE	0	0	0	16	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--FN1	7	12	COL1A1	13242	chr17:48266533:-	FN1	63801	chr2:216236956:-	INCL_NON_REF_SPLICE	YES	13917	12967	0	0	0.0891	0.1528	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS834T_FIBROBLAST	0	0	0.2419	TRUE	0	0	0	8	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--COL6A1	4	19	COL1A1	12975	chr17:48266800:-	COL6A1	29388	chr21:47410903:+	INCL_NON_REF_SPLICE	NO	13275	1083	0	0.02	0.0509	0.2419	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS834T_FIBROBLAST	0	0.02	0.2928	FALSE	0	6	0	3	0	FALSE	ACH-000275
HS834T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	7	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.0891	0.0509	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS834T_FIBROBLAST	0.85	1	0.14	FALSE	467	2173	244	435	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--COL6A1	4	15	COL1A1	12369	chr17:48267406:-	COL6A1	29388	chr21:47410903:+	INCL_NON_REF_SPLICE	NO	14898	1083	0	0.02	0.0509	0.1909	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS834T_FIBROBLAST	0	0.02	0.2418	FALSE	0	6	0	3	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--FN1	5	11	COL1A1	7831	chr17:48271944:-	FN1	61578	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	12889	13738	0	0	0.0636	0.14	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS834T_FIBROBLAST	0	0	0.2036	TRUE	0	0	0	14	0	FALSE	ACH-000275
HS834T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	7	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0891	0.0382	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS834T_FIBROBLAST	0.91	1	0.1273	FALSE	515	4851	409	746	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A2--COL4A1	6	6	COL1A2	26979	chr7:94054498:+	COL4A1	63401	chr13:110827644:-	INCL_NON_REF_SPLICE	YES	8481	1138	0	0.01	0.0764	0.0764	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS834T_FIBROBLAST	0	0.01	0.1528	TRUE	0	0	0	1	0	FALSE	ACH-000275
HS834T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	6	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0764	0.0764	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS834T_FIBROBLAST	0.92	1	0.1528	FALSE	407	2205	196	549	0	FALSE	ACH-000275
HS834T_FIBROBLAST	PRR16--CTD-2334D19.1	6	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	87	0	0.11	1	0.0764	0.0636	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS834T_FIBROBLAST	0.11	1	0.14	FALSE	56	216	12	147	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--COL6A1	2	20	COL1A1	12735	chr17:48267040:-	COL6A1	29378	chr21:47410893:+	ONLY_REF_SPLICE	YES	15482	1131	0	0.02	0.0255	0.2546	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS834T_FIBROBLAST	0	0.02	0.2801	TRUE	0	6	0	3	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--COL6A1	3	16	COL1A1	12413	chr17:48267362:-	COL6A1	29405	chr21:47410920:+	INCL_NON_REF_SPLICE	YES	15752	1207	0	0.02	0.0382	0.2037	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS834T_FIBROBLAST	0	0.02	0.2419	TRUE	0	6	0	3	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--FN1	3	16	COL1A1	6831	chr17:48272944:-	FN1	22524	chr2:216300497:-	INCL_NON_REF_SPLICE	YES	13084	7478	0	0	0.0382	0.2037	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS834T_FIBROBLAST	0	0	0.2419	TRUE	0	0	0	13	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A2--COL4A1	5	8	COL1A2	19624	chr7:94047143:+	COL4A1	38292	chr13:110866362:-	ONLY_REF_SPLICE	YES	5932	456	0	0.03	0.0636	0.1018	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS834T_FIBROBLAST	0	0.03	0.1654	TRUE	0	0	0	1	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--COL6A1	5	6	COL1A1	12405	chr17:48267370:-	COL6A1	33571	chr21:47417633:+	INCL_NON_REF_SPLICE	NO	14923	2594	0	0	0.0636	0.0764	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS834T_FIBROBLAST	0	0	0.14	FALSE	0	6	0	4	0	FALSE	ACH-000275
HS834T_FIBROBLAST	PRR16--CTD-2334D19.1	4	10	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	34	0	0.29	1	0.0509	0.1273	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS834T_FIBROBLAST	0.29	1	0.1782	FALSE	21	45	1	60	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--COL6A1	5	5	COL1A1	6955	chr17:48272820:-	COL6A1	32203	chr21:47414074:+	INCL_NON_REF_SPLICE	YES	13509	3504	0	0	0.0636	0.0636	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS834T_FIBROBLAST	0	0	0.1272	TRUE	0	1	0	5	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--COL6A1	5	4	COL1A1	6233	chr17:48273542:-	COL6A1	32247	chr21:47414118:+	INCL_NON_REF_SPLICE	YES	13304	2887	0	0	0.0636	0.0509	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS834T_FIBROBLAST	0	0	0.1145	TRUE	0	1	0	5	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--COL6A1	4	7	COL1A1	12547	chr17:48267228:-	COL6A1	33562	chr21:47417624:+	INCL_NON_REF_SPLICE	NO	15351	2460	0	0	0.0509	0.0891	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS834T_FIBROBLAST	0	0	0.14	FALSE	0	6	0	4	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--FN1	3	11	COL1A1	7994	chr17:48271781:-	FN1	62623	chr2:216238134:-	INCL_NON_REF_SPLICE	YES	13785	15318	0	0	0.0382	0.14	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS834T_FIBROBLAST	0	0	0.1782	TRUE	0	0	0	8	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A2--COL4A1	4	7	COL1A2	27456	chr7:94054975:+	COL4A1	55146	chr13:110839546:-	INCL_NON_REF_SPLICE	NO	8828	845	0	0.01	0.0509	0.0891	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS834T_FIBROBLAST	0	0.01	0.14	FALSE	0	0	0	1	0	FALSE	ACH-000275
HS834T_FIBROBLAST	MT-TA--MT-TC	5	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0636	0.0382	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS834T_FIBROBLAST	1	1	0.1018	FALSE	462	80	0	856	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--COL6A1	3	10	COL1A1	14913	chr17:48264862:-	COL6A1	33571	chr21:47417633:+	INCL_NON_REF_SPLICE	YES	11855	2594	0	0	0.0382	0.1273	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS834T_FIBROBLAST	0	0	0.1655	TRUE	0	0	0	1	0	FALSE	ACH-000275
HS834T_FIBROBLAST	SERPINE1--MT-ND4	5	1	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	7062	12071	0	0	0.0636	0.0127	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HS834T_FIBROBLAST	0	0	0.0763	FALSE	1	0	0	29	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--COL6A1	1	15	COL1A1	13037	chr17:48266738:-	COL6A1	32210	chr21:47414081:+	ONLY_REF_SPLICE	NO	13660	3177	0	0.01	0.0127	0.1909	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS834T_FIBROBLAST	0	0.01	0.2036	TRUE	0	0	0	3	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A2--COL4A1	3	7	COL1A2	19624	chr7:94047143:+	COL4A1	46882	chr13:110855945:-	INCL_NON_REF_SPLICE	YES	5932	1251	0	0.01	0.0382	0.0891	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS834T_FIBROBLAST	0	0.01	0.1273	TRUE	0	0	0	1	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A2--COL4A1	4	1	COL1A2	18243	chr7:94045762:+	COL4A1	73181	chr13:110814789:-	INCL_NON_REF_SPLICE	YES	7152	1102	0	0	0.0509	0.0127	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS834T_FIBROBLAST	0	0	0.0636	FALSE	0	0	0	1	0	FALSE	ACH-000275
HS834T_FIBROBLAST	MT-ATP6--MT-CO1	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	6997	18948	0	0	0.0509	0.0127	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS834T_FIBROBLAST	0	0	0.0636	FALSE	183	104	9	328	0	FALSE	ACH-000275
HS834T_FIBROBLAST	CCDC122--ENOX1	4	0	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0509	0	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	HS834T_FIBROBLAST	1	1	0.0509	FALSE	39	52	2	34	0	FALSE	ACH-000275
HS834T_FIBROBLAST	MT-ND6--COL1A2	4	0	MT-ND6	1313	chrM:14361:-	COL1A2	30434	chr7:94054428:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	HS834T_FIBROBLAST	1	1	0.0509	FALSE	0	1	0	7	0	FALSE	ACH-000275
HS834T_FIBROBLAST	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS834T_FIBROBLAST	1	1	0.0509	FALSE	462	80	0	856	0	FALSE	ACH-000275
HS834T_FIBROBLAST	RP11-155G15.2--RP11-1E3.1	4	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0509	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HS834T_FIBROBLAST	1	1	0.0509	FALSE	46	201	11	112	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--COL6A1	3	3	COL1A1	6491	chr17:48273284:-	COL6A1	33973	chr21:47418035:+	ONLY_REF_SPLICE	NO	14367	2394	0	0	0.0382	0.0382	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS834T_FIBROBLAST	0	0	0.0764	FALSE	0	0	0	1	0	FALSE	ACH-000275
HS834T_FIBROBLAST	RP11-634B7.4--TRIM58	3	3	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	38	1	0.14	0.0382	0.0382	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	HS834T_FIBROBLAST	0.14	1	0.0764	TRUE	158	633	76	73	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A2--COL4A1	3	2	COL1A2	11274	chr7:94038659:+	COL4A1	55887	chr13:110838805:-	INCL_NON_REF_SPLICE	YES	6702	1181	0	0	0.0382	0.0255	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS834T_FIBROBLAST	0	0	0.0637	FALSE	0	0	0	1	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A2--COL4A1	3	1	COL1A2	8773	chr7:94035615:+	COL4A1	64789	chr13:110826256:-	INCL_NON_REF_SPLICE	NO	5169	1080	0	0	0.0382	0.0127	HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	HS834T_FIBROBLAST	0	0	0.0509	FALSE	0	0	0	1	0	FALSE	ACH-000275
HS834T_FIBROBLAST	CTD-2337A12.1--CAST	3	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	125	1	0.03	0.0382	0.0127	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS834T_FIBROBLAST	0.03	1	0.0509	TRUE	347	1186	183	220	0	FALSE	ACH-000275
HS834T_FIBROBLAST	MT-ATP6--MT-CO1	3	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	7137	18634	0	0	0.0382	0.0127	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS834T_FIBROBLAST	0	0	0.0509	FALSE	183	104	9	328	0	FALSE	ACH-000275
HS834T_FIBROBLAST	CTGF--ACTB	3	0	CTGF	1136	chr6:132272378:-	ACTB	10623	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HS834T_FIBROBLAST	1	1	0.0382	TRUE	0	0	0	9	0	TRUE	ACH-000275
HS834T_FIBROBLAST	GALNS--ACSF3	3	0	GALNS	1213	chr16:88923166:-	ACSF3	30692	chr16:89169012:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0	GALNS->Oncogene{Bushman},chr16:88880142-88923378:-,galactosamine_(N-acetyl)-6-sulfatase,ACSF3->acyl-CoA_synthetase_family_member_3,chr16:89154783-89222254:+	HS834T_FIBROBLAST	1	1	0.0382	TRUE	0	0	0	2	0	TRUE	ACH-000275
HS834T_FIBROBLAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1564	chrM:9090:+	MT-CO1	5965	chrM:7187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HS834T_FIBROBLAST	1	1	0.0382	FALSE	183	104	9	328	0	FALSE	ACH-000275
HS834T_FIBROBLAST	SLC25A44--RHOA	3	0	SLC25A44	1159	chr1:156164038:+	RHOA	17387	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0	SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	HS834T_FIBROBLAST	1	1	0.0382	TRUE	0	0	0	1	0	TRUE	ACH-000275
HS834T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.8	1	0.0127	0.0891	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS834T_FIBROBLAST	0.8	1	0.1018	FALSE	192	492	57	212	0	FALSE	ACH-000275
HS834T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0127	0.0764	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS834T_FIBROBLAST	0.88	1	0.0891	FALSE	275	511	55	178	0	FALSE	ACH-000275
HS834T_FIBROBLAST	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0255	0.0127	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS834T_FIBROBLAST	0.75	1	0.0382	TRUE	458	1351	185	561	0	FALSE	ACH-000275
HS834T_FIBROBLAST	RP4-565E6.1--HYDIN	2	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0.0127	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS834T_FIBROBLAST	1	1	0.0382	TRUE	456	1387	91	133	0	FALSE	ACH-000275
HS834T_FIBROBLAST	GPR180--GPC6	2	0	GPR180	3530	chr13:95264644:+	GPC6	25421	chr13:94938603:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},{Klijn_CCL:Lung=1},GPR180->G_protein-coupled_receptor_180,chr13:95254157-95286899:+,GPC6->chr13:93879095-95059655:+,glypican_6	HS834T_FIBROBLAST	1	1	0.0255	TRUE	0	0	0	2	0	TRUE	ACH-000275
HS834T_FIBROBLAST	KIRREL--GNAS	2	0	KIRREL	1456	chr1:157963518:+	GNAS	37093	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},KIRREL->chr1:157963063-158070052:+,kin_of_IRRE_like_(Drosophila),GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HS834T_FIBROBLAST	1	1	0.0255	TRUE	0	0	0	1	0	TRUE	ACH-000275
HS834T_FIBROBLAST	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS834T_FIBROBLAST	1	1	0.0255	TRUE	465	1949	224	605	0	FALSE	ACH-000275
HS834T_FIBROBLAST	COL1A1--COL6A1	1	3	COL1A1	6259	chr17:48273516:-	COL6A1	33973	chr21:47418035:+	ONLY_REF_SPLICE	YES	14221	2394	0	0	0.0127	0.0382	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1	HS834T_FIBROBLAST	0	0	0.0509	FALSE	0	0	0	1	0	FALSE	ACH-000275
HS834T_FIBROBLAST	EEF1DP3--FRY	1	3	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	4	1	0.5	0.8	0.0127	0.0382	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	HS834T_FIBROBLAST	0.5	0.8	0.0509	FALSE	18	26	2	21	0	FALSE	ACH-000275
SNU668_STOMACH	EIF3A--SFXN4	1629	665	EIF3A	1177	chr10:120840140:-	SFXN4	34015	chr10:120914689:-	ONLY_REF_SPLICE	YES	230	207	0.91	0.92	16.3007	6.6544	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:-:[59963],EIF3A->Oncogene{Bushman},chr10:120794356-120840316:-,eukaryotic_translation_initiation_factor_3_subunit_A,SFXN4->chr10:120900279-120925179:-,sideroflexin_4	SNU668_STOMACH	0.91	0.92	22.9551	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	EIF3A--SFXN4	166	294	EIF3A	1177	chr10:120840140:-	SFXN4	35131	chr10:120907372:-	ONLY_REF_SPLICE	YES	230	287	0.67	0.62	1.6611	2.9419	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:-:[59963],EIF3A->Oncogene{Bushman},chr10:120794356-120840316:-,eukaryotic_translation_initiation_factor_3_subunit_A,SFXN4->chr10:120900279-120925179:-,sideroflexin_4	SNU668_STOMACH	0.62	0.67	4.603	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	TIMM23B--LINC00843	180	45	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	1.8012	0.4503	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU668_STOMACH	1	1	2.2515	TRUE	508	994	45	981	0	FALSE	ACH-000344
SNU668_STOMACH	TIMM23--RP11-464F9.1	101	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	301	10	0.27	0.92	1.0107	0.0801	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU668_STOMACH	0.27	0.92	1.0908	TRUE	519	3926	326	965	0	FALSE	ACH-000344
SNU668_STOMACH	DDR1--ABCF1	43	12	DDR1	15624	chr6:30862448:+	ABCF1	34524	chr6:30557465:+	ONLY_REF_SPLICE	YES	58	58	0.49	0.49	0.4303	0.1201	DDR1->Oncogene{Bushman},chr6:30844198-30867933:+,discoidin_domain_receptor_tyrosine_kinase_1,ABCF1->ATP_binding_cassette_subfamily_F_member_1,chr6:30539153-30564956:+	SNU668_STOMACH	0.49	0.49	0.5504	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	38	11	CTC-479C5.12	2221	chr16:67968700:-	LCAT	14058	chr16:67974381:-	ONLY_REF_SPLICE	YES	78	17	0.39	0.74	0.3802	0.1101	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.39	0.74	0.4903	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	PPP6R1--CTD-2369P2.10	39	6	PPP6R1	1561	chr19:55769803:-	CTD-2369P2.10	23724	chr19:10419226:-	ONLY_REF_SPLICE	YES	7	4	0.87	0.92	0.3903	0.06	PPP6R1->chr19:55741148-55770363:-,protein_phosphatase_6_regulatory_subunit_1,CTD-2369P2.10->chr19:10416103-10426685:-	SNU668_STOMACH	0.87	0.92	0.4503	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	EIF3A--SFXN4	2	152	EIF3A	1177	chr10:120840140:-	SFXN4	36217	chr10:120905865:-	ONLY_REF_SPLICE	YES	230	551	0.4	0.22	0.02	1.521	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:-:[59963],EIF3A->Oncogene{Bushman},chr10:120794356-120840316:-,eukaryotic_translation_initiation_factor_3_subunit_A,SFXN4->chr10:120900279-120925179:-,sideroflexin_4	SNU668_STOMACH	0.22	0.4	1.541	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	RP11-123O10.4--GRIP1	39	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3903	0.04	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU668_STOMACH	1	1	0.4303	FALSE	416	2512	207	587	0	FALSE	ACH-000344
SNU668_STOMACH	ZNF654--HMGB2	39	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3903	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU668_STOMACH	1	1	0.3903	TRUE	0	0	0	518	0	FALSE	ACH-000344
SNU668_STOMACH	MT-TA--MT-TC	33	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3302	0.04	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU668_STOMACH	1	1	0.3702	FALSE	462	80	0	856	0	FALSE	ACH-000344
SNU668_STOMACH	LEMD3--CPNE8	30	4	LEMD3	2548	chr12:65564898:+	CPNE8	20249	chr12:39268313:-	ONLY_REF_SPLICE	YES	58	0	0.37	1	0.3002	0.04	LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+,CPNE8->chr12:39040624-39301232:-,copine_8	SNU668_STOMACH	0.37	1	0.3402	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	TBC1D1--RP11-83C7.2	25	15	TBC1D1	23572	chr4:38091738:+	RP11-83C7.2	42441	chr4:38495719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2502	0.1501	TBC1D1->TBC1_domain_family_member_1,chr4:37892708-38140796:+,RP11-83C7.2->chr4:38422283-38524801:-	SNU668_STOMACH	1	1	0.4003	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	FBXL12--CARM1	26	9	FBXL12	2585	chr19:9929221:-	CARM1	12277	chr19:11015627:+	ONLY_REF_SPLICE	YES	26	91	0.57	0.28	0.2602	0.0901	FBXL12->F-box_and_leucine-rich_repeat_protein_12,chr19:9920943-9938492:-,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	SNU668_STOMACH	0.28	0.57	0.3503	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	24	14	CTC-479C5.12	2449	chr16:67968472:-	LCAT	14058	chr16:67974381:-	ONLY_REF_SPLICE	YES	3	17	0.93	0.69	0.2402	0.1401	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.69	0.93	0.3803	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	CEBPD--MT-CO1	25	0	CEBPD	2154	chr8:48650495:-	MT-CO1	6676	chrM:6401:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2502	0	CEBPD->CCAAT/enhancer_binding_protein_delta,chr8:48649471-48651648:-,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU668_STOMACH	1	1	0.2502	FALSE	0	0	0	1	0	FALSE	ACH-000344
SNU668_STOMACH	TBC1D1--RP11-83C7.2	18	13	TBC1D1	23572	chr4:38091738:+	RP11-83C7.2	43547	chr4:38455542:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1801	0.1301	TBC1D1->TBC1_domain_family_member_1,chr4:37892708-38140796:+,RP11-83C7.2->chr4:38422283-38524801:-	SNU668_STOMACH	1	1	0.3102	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	18	6	CTC-479C5.12	1722	chr16:67969199:-	LCAT	14058	chr16:67974381:-	ONLY_REF_SPLICE	YES	189	17	0.11	0.59	0.1801	0.06	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.11	0.59	0.2401	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	15	16	CTC-479C5.12	2946	chr16:67967975:-	LCAT	14058	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	6	17	0.84	0.65	0.1501	0.1601	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.65	0.84	0.3102	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	MT-CO1--COL3A1	17	1	MT-CO1	1605	chrM:6508:+	COL3A1	28798	chr2:189872273:+	INCL_NON_REF_SPLICE	YES	18851	4067	0	0	0.1701	0.01	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	SNU668_STOMACH	0	0	0.1801	FALSE	0	0	0	12	0	FALSE	ACH-000344
SNU668_STOMACH	PLEKHF1--NTF4	14	13	PLEKHF1	3047	chr19:30158087:+	NTF4	9896	chr19:49567119:-	ONLY_REF_SPLICE	YES	8	0	0.77	1	0.1401	0.1301	PLEKHF1->chr19:30155963-30166364:+,pleckstrin_homology_and_FYVE_domain_containing_1,NTF4->chr19:49559050-49568333:-,neurotrophin_4	SNU668_STOMACH	0.77	1	0.2702	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	HSPBP1--GRK5	17	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1701	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU668_STOMACH	1	1	0.1701	TRUE	1	39	0	134	39	FALSE	ACH-000344
SNU668_STOMACH	C15orf57--CBX3	13	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	25	25	0.44	0.44	0.1301	0.07	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU668_STOMACH	0.44	0.44	0.2001	TRUE	267	562	48	632	0	FALSE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	10	14	CTC-479C5.12	2454	chr16:67968467:-	LCAT	14058	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	4	17	0.86	0.59	0.1001	0.1401	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.59	0.86	0.2402	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	MT-ND6--MT-TE	13	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1301	0.01	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU668_STOMACH	1	1	0.1401	FALSE	499	1288	110	792	0	FALSE	ACH-000344
SNU668_STOMACH	NRIP1--AF127936.7	12	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1201	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU668_STOMACH	1	1	0.1201	FALSE	292	1546	117	613	0	FALSE	ACH-000344
SNU668_STOMACH	ASPH--FUS	11	1	ASPH	8053	chr8:62593527:-	FUS	55904	chr16:31199646:+	ONLY_REF_SPLICE	YES	1831	349	0.01	0.03	0.1101	0.01	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	SNU668_STOMACH	0.01	0.03	0.1201	TRUE	0	0	0	4	0	FALSE	ACH-000344
SNU668_STOMACH	SLC1A5--MT-ND4L	9	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	529	0	0.02	1	0.0901	0.01	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU668_STOMACH	0.02	1	0.1001	FALSE	0	0	0	189	0	FALSE	ACH-000344
SNU668_STOMACH	PLEKHF1--NTF4	9	0	PLEKHF1	1450	chr19:30156412:+	NTF4	9896	chr19:49567119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0901	0	PLEKHF1->chr19:30155963-30166364:+,pleckstrin_homology_and_FYVE_domain_containing_1,NTF4->chr19:49559050-49568333:-,neurotrophin_4	SNU668_STOMACH	1	1	0.0901	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.07	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU668_STOMACH	1	1	0.07	FALSE	13	9	0	364	0	FALSE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	3	14	CTC-479C5.12	2449	chr16:67968472:-	LCAT	13705	chr16:67974734:-	ONLY_REF_SPLICE	YES	3	21	0.85	0.45	0.03	0.1401	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.45	0.85	0.1701	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	MT-ND6--MT-TE	4	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0.0901	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU668_STOMACH	1	1	0.1301	FALSE	499	1288	110	792	0	FALSE	ACH-000344
SNU668_STOMACH	MT-ND6--MT-TE	5	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0.04	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU668_STOMACH	1	1	0.09	FALSE	499	1288	110	792	0	FALSE	ACH-000344
SNU668_STOMACH	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.05	0.02	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU668_STOMACH	0.78	1	0.07	FALSE	407	2205	196	549	0	FALSE	ACH-000344
SNU668_STOMACH	C15orf57--CBX3	4	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	25	26	0.26	0.26	0.04	0.05	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU668_STOMACH	0.26	0.26	0.09	TRUE	267	562	48	632	0	FALSE	ACH-000344
SNU668_STOMACH	MT-TA--MT-TC	5	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0.01	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU668_STOMACH	1	1	0.06	FALSE	462	80	0	856	0	FALSE	ACH-000344
SNU668_STOMACH	SAE1--CTD-2575K13.6	4	5	SAE1	10408	chr19:47658470:+	CTD-2575K13.6	20359	chr19:42414249:-	ONLY_REF_SPLICE	YES	271	0	0.03	1	0.04	0.05	SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,CTD-2575K13.6->chr19:42412671-42414249:-	SNU668_STOMACH	0.03	1	0.09	TRUE	0	0	0	1	0	FALSE	ACH-000344
SNU668_STOMACH	ERGIC3--COL3A1	5	0	ERGIC3	10770	chr20:34144006:+	COL3A1	32421	chr2:189866269:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0	ERGIC3->ERGIC_and_golgi_3,Oncogene{Bushman},chr20:34129770-34145405:+,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	SNU668_STOMACH	1	1	0.05	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	2	11	CTC-479C5.12	2221	chr16:67968700:-	LCAT	13705	chr16:67974734:-	ONLY_REF_SPLICE	YES	78	21	0.14	0.38	0.02	0.1101	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.14	0.38	0.1301	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	MT-TA--MT-TC	3	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.03	0.07	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU668_STOMACH	1	1	0.1	FALSE	462	80	0	856	0	FALSE	ACH-000344
SNU668_STOMACH	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.04	0.01	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU668_STOMACH	0.71	1	0.05	FALSE	515	4851	409	746	0	FALSE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	3	4	CTC-479C5.12	1598	chr16:67969323:-	LCAT	14058	chr16:67974381:-	INCL_NON_REF_SPLICE	YES	181	17	0.04	0.29	0.03	0.04	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.04	0.29	0.07	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	DAZAP1--NDUFS7	3	2	DAZAP1	9752	chr19:1425959:+	NDUFS7	30082	chr19:1393241:+	ONLY_REF_SPLICE	NO	148	167	0.03	0.03	0.03	0.02	LOCAL_REARRANGEMENT:+:[11985],DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+,NDUFS7->NADH:ubiquinone_oxidoreductase_core_subunit_S7,chr19:1383526-1395583:+	SNU668_STOMACH	0.03	0.03	0.05	TRUE	0	0	0	1	0	FALSE	ACH-000344
SNU668_STOMACH	NPM1P24--SET	3	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	25	559	0.14	0.01	0.03	0.01	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU668_STOMACH	0.01	0.14	0.04	FALSE	0	0	0	434	0	FALSE	ACH-000344
SNU668_STOMACH	AC091878.1--BASP1	3	0	AC091878.1	1971	chr5:17216186:-	BASP1	13448	chr5:17275317:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.03	0	NEIGHBORS_OVERLAP:-:+:[87019],AC091878.1->chr5:17130137-17217156:-,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	SNU668_STOMACH	1	1	0.03	FALSE	1	0	0	2	0	FALSE	ACH-000344
SNU668_STOMACH	ASPH--MTX2	3	0	ASPH	8053	chr8:62593527:-	MTX2	50884	chr2:177161588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.03	0	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,MTX2->chr2:177134123-177202753:+,metaxin_2	SNU668_STOMACH	1	1	0.03	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.03	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU668_STOMACH	1	1	0.03	FALSE	499	1288	110	792	0	FALSE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	1	6	CTC-479C5.12	1722	chr16:67969199:-	LCAT	13705	chr16:67974734:-	ONLY_REF_SPLICE	YES	189	21	0.04	0.25	0.01	0.06	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.04	0.25	0.07	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	FCHSD2--FADD	2	1	FCHSD2	3139	chr11:72851076:-	FADD	30090	chr11:70052239:+	ONLY_REF_SPLICE	YES	29	252	0.09	0.01	0.02	0.01	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,FADD->Fas_associated_via_death_domain,chr11:70049269-70053496:+	SNU668_STOMACH	0.01	0.09	0.03	FALSE	0	0	0	1	0	FALSE	ACH-000344
SNU668_STOMACH	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.19	1	0.02	0.01	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU668_STOMACH	0.19	1	0.03	FALSE	164	806	69	479	0	FALSE	ACH-000344
SNU668_STOMACH	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.21	1	0.02	0.01	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU668_STOMACH	0.21	1	0.03	FALSE	125	705	46	456	0	FALSE	ACH-000344
SNU668_STOMACH	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.02	0.01	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU668_STOMACH	0.75	1	0.03	FALSE	467	2173	244	435	0	FALSE	ACH-000344
SNU668_STOMACH	TGFB1--C19orf57	2	1	TGFB1	5866	chr19:41847788:-	C19orf57	15499	chr19:14015726:-	ONLY_REF_SPLICE	YES	261	9	0.01	0.25	0.02	0.01	TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1,C19orf57->chr19:13993161-14017265:-,chromosome_19_open_reading_frame_57	SNU668_STOMACH	0.01	0.25	0.03	FALSE	0	0	0	1	0	FALSE	ACH-000344
SNU668_STOMACH	TMSB10--TMSB4X	2	1	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	3096	4670	0	0	0.02	0.01	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	SNU668_STOMACH	0	0	0.03	FALSE	0	1	0	17	1	FALSE	ACH-000344
SNU668_STOMACH	AC011551.3--TXNL4A	2	0	AC011551.3	3737	chr19:47079856:-	TXNL4A	19637	chr18:77733856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	AC011551.3->chr19:47050313-47104118:-,TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A	SNU668_STOMACH	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	AP001432.14--TTC3	2	0	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	SNU668_STOMACH	1	1	0.02	TRUE	0	0	0	15	0	TRUE	ACH-000344
SNU668_STOMACH	CRIM1--FEZ2	2	0	CRIM1	18863	chr2:36749456:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	SNU668_STOMACH	1	1	0.02	TRUE	2	2	0	15	0	FALSE	ACH-000344
SNU668_STOMACH	DDR1--ABCF1	1	4	DDR1	14458	chr6:30861200:+	ABCF1	34524	chr6:30557465:+	ONLY_REF_SPLICE	YES	48	58	0.09	0.08	0.01	0.04	DDR1->Oncogene{Bushman},chr6:30844198-30867933:+,discoidin_domain_receptor_tyrosine_kinase_1,ABCF1->ATP_binding_cassette_subfamily_F_member_1,chr6:30539153-30564956:+	SNU668_STOMACH	0.08	0.09	0.05	TRUE	0	0	0	1	0	FALSE	ACH-000344
SNU668_STOMACH	GABBR2--FANCC	2	0	GABBR2	1781	chr9:101470699:-	FANCC	30886	chr9:98011651:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GABBR2->chr9:101050391-101471479:-,gamma-aminobutyric_acid_type_B_receptor_subunit_2,FANCC->ArcherDX_panel,Fanconi_anemia_complementation_group_C,FoundationOne_panel,Oncogene{Bushman},chr9:97861336-98079991:-	SNU668_STOMACH	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU668_STOMACH	1	1	0.02	TRUE	62	24	1	171	0	FALSE	ACH-000344
SNU668_STOMACH	CTC-479C5.12--LCAT	1	2	CTC-479C5.12	1436	chr16:67969485:-	LCAT	14058	chr16:67974381:-	ONLY_REF_SPLICE	YES	77	17	0.04	0.15	0.01	0.02	LOCAL_REARRANGEMENT:-:[3733],CTC-479C5.12->chr16:67963517-67969920:-,LCAT->chr16:67973653-67978034:-,lecithin-cholesterol_acyltransferase	SNU668_STOMACH	0.04	0.15	0.03	TRUE	0	0	0	1	0	TRUE	ACH-000344
SNU668_STOMACH	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.01	0.02	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU668_STOMACH	1	1	0.03	FALSE	93	270	15	244	0	FALSE	ACH-000344
SNU668_STOMACH	CDYL2--CMC2	1	1	CDYL2	1180	chr16:80838047:-	CMC2	27791	chr16:81031956:-	ONLY_REF_SPLICE	NO	99	774	0.02	0	0.01	0.01	CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2,CMC2->C-x9-C_motif_containing_2,chr16:81009698-81053875:-	SNU668_STOMACH	0	0.02	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000344
SNU668_STOMACH	CDYL2--CMC2	1	1	CDYL2	1180	chr16:80838047:-	CMC2	33635	chr16:81015482:-	ONLY_REF_SPLICE	NO	99	968	0.02	0	0.01	0.01	CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2,CMC2->C-x9-C_motif_containing_2,chr16:81009698-81053875:-	SNU668_STOMACH	0	0.02	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000344
SNU668_STOMACH	HNRNPDL--PHF10	1	1	HNRNPDL	5105	chr4:83347190:-	PHF10	16454	chr6:170116184:-	ONLY_REF_SPLICE	YES	257	218	0.01	0.01	0.01	0.01	HNRNPDL->chr4:83343717-83351294:-,heterogeneous_nuclear_ribonucleoprotein_D_like,PHF10->PHD_finger_protein_10,chr6:170104001-170124151:-	SNU668_STOMACH	0.01	0.01	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000344
SNU668_STOMACH	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	30	1	0.06	0.01	0.01	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU668_STOMACH	0.06	1	0.02	TRUE	458	1351	185	561	0	FALSE	ACH-000344
SNU668_STOMACH	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	NO	0	82	1	0.02	0.01	0.01	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU668_STOMACH	0.02	1	0.02	TRUE	465	1949	224	605	0	FALSE	ACH-000344
SNU668_STOMACH	SOCS5--EPAS1	1	1	SOCS5	1498	chr2:46926588:+	EPAS1	15089	chr2:46574012:+	ONLY_REF_SPLICE	NO	125	890	0.02	0	0.01	0.01	SOCS5->chr2:46926091-46990268:+,suppressor_of_cytokine_signaling_5,EPAS1->chr2:46520806-46613836:+,endothelial_PAS_domain_protein_1	SNU668_STOMACH	0	0.02	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000344
MIAPACA2_PANCREAS	RP11-488P3.1--GCLM	344	113	RP11-488P3.1	1248	chr1:94240753:-	GCLM	8418	chr1:94370144:-	ONLY_REF_SPLICE	YES	115	15	0.8	0.97	4.1007	1.347	RP11-488P3.1->chr1:94218480-94241000:-,GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit	MIAPACA2_PANCREAS	0.8	0.97	5.4477	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	CRIM1--IQCA1	202	112	CRIM1	7118	chr2:36668643:+	IQCA1	49252	chr2:237272622:-	ONLY_REF_SPLICE	YES	45	0	0.87	1	2.408	1.3351	{Klijn_CCL:Pancreas=1},CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),IQCA1->IQ_motif_containing_with_AAA_domain_1,chr2:237232794-237416185:-	MIAPACA2_PANCREAS	0.87	1	3.7431	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	MBD2--RP11-671P2.1	142	24	MBD2	1771	chr18:51750388:-	RP11-671P2.1	19087	chr18:51007443:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.6927	0.2861	MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2,RP11-671P2.1->chr18:51007205-51094653:-	MIAPACA2_PANCREAS	1	1	1.9788	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	RP11-96H19.1--RP11-446N19.1	61	20	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	3	0.98	0.96	0.7272	0.2384	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MIAPACA2_PANCREAS	0.96	0.98	0.9656	FALSE	515	4851	409	746	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	NSRP1--RP11-640N20.6	57	26	NSRP1	3631	chr17:28445191:+	RP11-640N20.6	23227	chr17:30422081:+	ONLY_REF_SPLICE	YES	37	0	0.69	1	0.6795	0.3099	NSRP1->chr17:28442539-28513493:+,nuclear_speckle_splicing_regulatory_protein_1,RP11-640N20.6->chr17:30410198-30424084:+	MIAPACA2_PANCREAS	0.69	1	0.9894	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	TIMM23B--LINC00843	33	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3934	0.2027	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MIAPACA2_PANCREAS	1	1	0.5961	TRUE	508	994	45	981	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	RP11-96H19.1--RP11-446N19.1	26	34	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.97	1	0.3099	0.4053	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MIAPACA2_PANCREAS	0.97	1	0.7152	FALSE	407	2205	196	549	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	RP11-488P3.1--GCLM	19	59	RP11-488P3.1	1248	chr1:94240753:-	GCLM	9741	chr1:94367225:-	ONLY_REF_SPLICE	YES	115	43	0.4	0.64	0.2265	0.7033	RP11-488P3.1->chr1:94218480-94241000:-,GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit	MIAPACA2_PANCREAS	0.4	0.64	0.9298	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	MT-ND6--MT-ND5	21	2	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1172	1	0.02	0.2503	0.0238	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	MIAPACA2_PANCREAS	0.02	1	0.2741	FALSE	101	855	57	72	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	CRIM1--IQCA1	14	25	CRIM1	5875	chr2:36623930:+	IQCA1	49252	chr2:237272622:-	ONLY_REF_SPLICE	YES	75	0	0.34	1	0.1669	0.298	{Klijn_CCL:Pancreas=1},CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),IQCA1->IQ_motif_containing_with_AAA_domain_1,chr2:237232794-237416185:-	MIAPACA2_PANCREAS	0.34	1	0.4649	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	MT-ND6--MT-TE	18	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2146	0.0238	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MIAPACA2_PANCREAS	1	1	0.2384	FALSE	499	1288	110	792	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	MT-TA--MT-TC	16	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1907	0.0238	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MIAPACA2_PANCREAS	1	1	0.2145	FALSE	462	80	0	856	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	CLN8--CSMD3	13	10	CLN8	6398	chr8:1719763:+	CSMD3	31875	chr8:114031408:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.155	0.1192	CLN8->ceroid-lipofuscinosis,_neuronal_8,chr8:1703944-1734738:+,CSMD3->CUB_and_Sushi_multiple_domains_3,Oncogene{Bushman},chr8:113235157-114449328:-	MIAPACA2_PANCREAS	1	1	0.2742	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	TIMM23--RP11-464F9.1	15	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	270	0	0.06	1	0.1788	0.0119	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MIAPACA2_PANCREAS	0.06	1	0.1907	TRUE	519	3926	326	965	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	SLC20A1--POLR1B	10	18	SLC20A1	7996	chr2:113416523:+	POLR1B	32064	chr2:113330139:+	INCL_NON_REF_SPLICE	YES	332	30	0.08	0.48	0.1192	0.2146	{Klijn_CCL:Pancreas=1},LOCAL_REARRANGEMENT:+:[68799],SLC20A1->chr2:113403434-113421404:+,solute_carrier_family_20_member_1,POLR1B->chr2:113299492-113334635:+,polymerase_(RNA)_I_subunit_B	MIAPACA2_PANCREAS	0.08	0.48	0.3338	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	RP11-488P3.1--GCLM	4	41	RP11-488P3.1	1248	chr1:94240753:-	GCLM	10826	chr1:94363454:-	ONLY_REF_SPLICE	YES	115	161	0.28	0.22	0.0477	0.4888	RP11-488P3.1->chr1:94218480-94241000:-,GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit	MIAPACA2_PANCREAS	0.22	0.28	0.5365	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	MAT2B--HMMR	12	5	MAT2B	2513	chr5:162932755:+	HMMR	17263	chr5:162896647:+	ONLY_REF_SPLICE	YES	129	70	0.12	0.2	0.143	0.0596	{Klijn_CCL:Pancreas=1},LOCAL_REARRANGEMENT:+:[11173],MAT2B->chr5:162930120-162946342:+,methionine_adenosyltransferase_2B,HMMR->chr5:162887209-162918947:+,hyaluronan_mediated_motility_receptor	MIAPACA2_PANCREAS	0.12	0.2	0.2026	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	EEF2--RPS28	12	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	4432	0	0	1	0.143	0.0119	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MIAPACA2_PANCREAS	0	1	0.1549	TRUE	0	0	0	100	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	HSP90AB1--MT-RNR2	12	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.143	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MIAPACA2_PANCREAS	1	1	0.143	FALSE	13	9	0	364	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	BDH1--AC024560.2	9	11	BDH1	9581	chr3:197259283:-	AC024560.2	25187	chr3:197388648:-	ONLY_REF_SPLICE	YES	137	0	0.13	1	0.1073	0.1311	LOCAL_REARRANGEMENT:-:[87242],BDH1->3-hydroxybutyrate_dehydrogenase,_type_1,chr3:197236654-197300194:-,AC024560.2->chr3:197387436-197392628:-	MIAPACA2_PANCREAS	0.13	1	0.2384	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	SLC20A1--POLR1B	9	9	SLC20A1	6412	chr2:113414818:+	POLR1B	32064	chr2:113330139:+	ONLY_REF_SPLICE	YES	170	30	0.1	0.38	0.1073	0.1073	{Klijn_CCL:Pancreas=1},LOCAL_REARRANGEMENT:+:[68799],SLC20A1->chr2:113403434-113421404:+,solute_carrier_family_20_member_1,POLR1B->chr2:113299492-113334635:+,polymerase_(RNA)_I_subunit_B	MIAPACA2_PANCREAS	0.1	0.38	0.2146	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	RP11-96H19.1--RP11-446N19.1	2	34	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.95	1	0.0238	0.4053	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MIAPACA2_PANCREAS	0.95	1	0.4291	FALSE	275	511	55	178	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	MAT2B--HMMR	9	1	MAT2B	1311	chr5:162930430:+	HMMR	17263	chr5:162896647:+	ONLY_REF_SPLICE	YES	22	70	0.31	0.12	0.1073	0.0119	{Klijn_CCL:Pancreas=1},LOCAL_REARRANGEMENT:+:[11173],MAT2B->chr5:162930120-162946342:+,methionine_adenosyltransferase_2B,HMMR->chr5:162887209-162918947:+,hyaluronan_mediated_motility_receptor	MIAPACA2_PANCREAS	0.12	0.31	0.1192	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	RP11-96H19.1--RP11-446N19.1	4	20	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	3	1	0.89	0.0477	0.2384	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MIAPACA2_PANCREAS	0.89	1	0.2861	FALSE	467	2173	244	435	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	BCAR3--GCLM	7	3	BCAR3	2227	chr1:94311123:-	GCLM	30973	chr1:94370144:-	ONLY_REF_SPLICE	YES	0	15	1	0.4	0.0834	0.0358	LOCAL_REARRANGEMENT:-:[38055],BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit	MIAPACA2_PANCREAS	0.4	1	0.1192	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	C15orf57--CBX3	7	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	33	13	0.21	0.41	0.0834	0.0238	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MIAPACA2_PANCREAS	0.21	0.41	0.1072	TRUE	267	562	48	632	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	FAT1--SORBS2	6	6	FAT1	6844	chr4:187627717:-	SORBS2	51617	chr4:186696520:-	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.0715	0.0715	FAT1->ArcherDX_panel,FAT_atypical_cadherin_1,FoundationOne_panel,Oncogene{Bushman},chr4:187508937-187647876:-,SORBS2->Oncogene{Bushman},chr4:186506598-186877806:-,sorbin_and_SH3_domain_containing_2	MIAPACA2_PANCREAS	0.75	1	0.143	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	MT-CO3--MT-ATP6	3	18	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	7	5	0.75	0.81	0.0358	0.2146	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MIAPACA2_PANCREAS	0.75	0.81	0.2504	FALSE	189	492	56	216	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	MT-ND6--MT-TE	7	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0.0238	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MIAPACA2_PANCREAS	1	1	0.1072	FALSE	499	1288	110	792	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	MT-CO3--MT-ATP6	3	17	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	2	4	0.91	0.83	0.0358	0.2027	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MIAPACA2_PANCREAS	0.83	0.91	0.2385	FALSE	189	492	56	216	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	MT-ND5--MT-ND4	3	17	MT-ND5	2745	chrM:14081:+	MT-ND4	5875	chrM:10822:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0358	0.2027	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	MIAPACA2_PANCREAS	0.95	1	0.2385	FALSE	28	25	1	22	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	MT-ND6--MT-TE	6	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0.0596	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MIAPACA2_PANCREAS	1	1	0.1311	FALSE	499	1288	110	792	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	JSRP1--RPS28	7	0	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MIAPACA2_PANCREAS	1	1	0.0834	TRUE	0	1	0	84	1	FALSE	ACH-000601
MIAPACA2_PANCREAS	MT-ND6--MT-TE	5	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0596	0.0715	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MIAPACA2_PANCREAS	1	1	0.1311	FALSE	499	1288	110	792	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	SLC20A1--POLR1B	5	6	SLC20A1	4735	chr2:113410375:+	POLR1B	32064	chr2:113330139:+	ONLY_REF_SPLICE	YES	169	30	0.06	0.27	0.0596	0.0715	{Klijn_CCL:Pancreas=1},LOCAL_REARRANGEMENT:+:[68799],SLC20A1->chr2:113403434-113421404:+,solute_carrier_family_20_member_1,POLR1B->chr2:113299492-113334635:+,polymerase_(RNA)_I_subunit_B	MIAPACA2_PANCREAS	0.06	0.27	0.1311	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	MT-CO3--MT-ATP6	5	2	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	5	0	0.58	1	0.0596	0.0238	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MIAPACA2_PANCREAS	0.58	1	0.0834	FALSE	189	492	56	216	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	MT-TA--MT-TC	5	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0596	0.0238	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MIAPACA2_PANCREAS	1	1	0.0834	FALSE	462	80	0	856	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	CRIM1--IQCA1	4	5	CRIM1	1698	chr2:36583766:+	IQCA1	51518	chr2:237253286:-	ONLY_REF_SPLICE	YES	113	100	0.07	0.08	0.0477	0.0596	{Klijn_CCL:Pancreas=1},CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),IQCA1->IQ_motif_containing_with_AAA_domain_1,chr2:237232794-237416185:-	MIAPACA2_PANCREAS	0.07	0.08	0.1073	TRUE	0	0	0	1	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	JSRP1--RPS28	5	0	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0596	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MIAPACA2_PANCREAS	1	1	0.0596	TRUE	0	1	0	84	1	FALSE	ACH-000601
MIAPACA2_PANCREAS	MT-ND6--MT-TE	3	5	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0.0596	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MIAPACA2_PANCREAS	1	1	0.0954	FALSE	499	1288	110	792	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	CRIM1--IQCA1	2	8	CRIM1	5875	chr2:36623930:+	IQCA1	51518	chr2:237253286:-	ONLY_REF_SPLICE	YES	75	100	0.12	0.09	0.0238	0.0954	{Klijn_CCL:Pancreas=1},CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),IQCA1->IQ_motif_containing_with_AAA_domain_1,chr2:237232794-237416185:-	MIAPACA2_PANCREAS	0.09	0.12	0.1192	TRUE	0	0	0	1	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MIAPACA2_PANCREAS	1	1	0.0477	FALSE	189	492	56	216	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MIAPACA2_PANCREAS	1	1	0.0477	FALSE	462	80	0	856	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	MT-TA--MT-TC	3	2	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0.0238	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MIAPACA2_PANCREAS	1	1	0.0596	FALSE	462	80	0	856	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	EIF4A1P10--HSP90AA1	3	0	EIF4A1P10	1852	chrX:91368609:-	HSP90AA1	12841	chr14:102548565:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	EIF4A1P10->chrX:91368245-91369460:-,eukaryotic_translation_initiation_factor_4A1_pseudogene_10,HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1	MIAPACA2_PANCREAS	1	1	0.0358	TRUE	0	0	0	2	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	MT-CO3--MT-ATP6	3	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MIAPACA2_PANCREAS	1	1	0.0358	FALSE	189	492	56	216	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	ZNF777--MFSD10	3	0	ZNF777	7948	chr7:149129678:-	MFSD10	13150	chr4:2935609:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	ZNF777->chr7:149128454-149158214:-,zinc_finger_protein_777,MFSD10->chr4:2932288-2936586:-,major_facilitator_superfamily_domain_containing_10	MIAPACA2_PANCREAS	1	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	CRIM1--IQCA1	1	6	CRIM1	1698	chr2:36583766:+	IQCA1	49252	chr2:237272622:-	ONLY_REF_SPLICE	NO	113	0	0.06	1	0.0119	0.0715	{Klijn_CCL:Pancreas=1},CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),IQCA1->IQ_motif_containing_with_AAA_domain_1,chr2:237232794-237416185:-	MIAPACA2_PANCREAS	0.06	1	0.0834	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	AC002116.7--FAM193A	2	0	AC002116.7	3379	chr19:36510286:+	FAM193A	32591	chr4:2733502:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	AC002116.7->chr19:36505410-36536874:+,FAM193A->chr4:2626988-2734292:+,family_with_sequence_similarity_193_member_A	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	FAM118A--KDM4B	2	0	FAM118A	6583	chr22:45719308:+	KDM4B	21994	chr19:5016268:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	FAM118A->chr22:45704849-45737836:+,family_with_sequence_similarity_118_member_A,KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	IGF2BP2--NDUFA9	2	0	IGF2BP2	2393	chr3:185540941:-	NDUFA9	34907	chr12:4777623:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,NDUFA9->NADH:ubiquinone_oxidoreductase_subunit_A9,chr12:4758261-4798454:+	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	NSRP1--RP11-640N20.6	2	0	NSRP1	2321	chr17:28443881:+	RP11-640N20.6	23227	chr17:30422081:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	NSRP1->chr17:28442539-28513493:+,nuclear_speckle_splicing_regulatory_protein_1,RP11-640N20.6->chr17:30410198-30424084:+	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	NUP214--FBXW2	2	0	NUP214	11937	chr9:134016097:+	FBXW2	54524	chr9:123535118:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,FBXW2->F-box_and_WD_repeat_domain_containing_2,chr9:123514256-123555690:-	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	PRKAG2--PUS7	2	0	PRKAG2	14032	chr7:151329155:-	PUS7	36485	chr7:105135700:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	PRKAG2->chr7:151253197-151574210:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_2,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	PRKAR2B--WDR37	2	0	PRKAR2B	1566	chr7:106685659:+	WDR37	21418	chr10:1118056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	PRKAR2B->chr7:106685094-106802256:+,protein_kinase_cAMP-dependent_type_II_regulatory_subunit_beta,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	RP11-379F4.4--IQCJ	2	0	RP11-379F4.4	8297	chr3:158459933:+	IQCJ	20857	chr3:158980337:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	RP11-379F4.4->chr3:158450052-158501859:+,IQCJ->IQ_motif_containing_J,chr3:158680717-158984096:+	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	SAMHD1--ZFYVE26	2	0	SAMHD1	15871	chr20:35526225:-	ZFYVE26	70089	chr14:68196536:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-,ZFYVE26->Oncogene{Bushman},chr14:68194091-68283307:-,zinc_finger_FYVE-type_containing_26	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	YAF2--PPHLN1	2	0	YAF2	1751	chr12:42631401:-	PPHLN1	43594	chr12:42835117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=2,Pancreas=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[98],YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,PPHLN1->chr12:42632249-42853517:+,periphilin_1	MIAPACA2_PANCREAS	1	1	0.0238	TRUE	0	2	0	4	1	TRUE	ACH-000601
MIAPACA2_PANCREAS	BCAR3--GCLM	1	2	BCAR3	2227	chr1:94311123:-	GCLM	33381	chr1:94363454:-	ONLY_REF_SPLICE	YES	0	161	1	0.02	0.0119	0.0238	LOCAL_REARRANGEMENT:-:[38055],BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,GCLM->chr1:94350761-94374966:-,glutamate-cysteine_ligase_modifier_subunit	MIAPACA2_PANCREAS	0.02	1	0.0357	TRUE	0	0	0	1	0	FALSE	ACH-000601
MIAPACA2_PANCREAS	FAT1--SORBS2	1	2	FAT1	6844	chr4:187627717:-	SORBS2	62941	chr4:186606000:-	ONLY_REF_SPLICE	YES	4	2	0.43	0.6	0.0119	0.0238	FAT1->ArcherDX_panel,FAT_atypical_cadherin_1,FoundationOne_panel,Oncogene{Bushman},chr4:187508937-187647876:-,SORBS2->Oncogene{Bushman},chr4:186506598-186877806:-,sorbin_and_SH3_domain_containing_2	MIAPACA2_PANCREAS	0.43	0.6	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000601
MIAPACA2_PANCREAS	CRIM1--IQCA1	1	1	CRIM1	1698	chr2:36583766:+	IQCA1	56404	chr2:237240240:-	ONLY_REF_SPLICE	YES	113	147	0.02	0.01	0.0119	0.0119	{Klijn_CCL:Pancreas=1},CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),IQCA1->IQ_motif_containing_with_AAA_domain_1,chr2:237232794-237416185:-	MIAPACA2_PANCREAS	0.01	0.02	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000601
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	316	13	IGH@	94754	chr14:106330024:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	2	96	0.99	0.77	3.9739	0.1635	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.99	4.1374	TRUE	0	0	0	6	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	244	7	IGH@	94353	chr14:106330425:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	2	96	0.99	0.72	3.0685	0.088	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	0.99	3.1565	TRUE	0	0	0	5	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	234	32	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	1	0	1	1	2.9427	0.4024	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	3.3451	TRUE	0	0	0	25	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITPK1--ISM2	126	65	ITPK1	12607	chr14:93418291:-	ISM2	24406	chr14:77951262:-	ONLY_REF_SPLICE	YES	250	1	0.43	0.99	1.5845	0.8174	{Klijn_CCL:Lymphoid=1},ITPK1->chr14:93403259-93582665:-,inositol-tetrakisphosphate_1-kinase,ISM2->chr14:77940740-77965210:-,isthmin_2	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.99	2.4019	TRUE	0	0	0	2	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	117	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.4714	0.415	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.8864	TRUE	508	994	45	981	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	96	22	IGH@	95370	chr14:106329408:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	2	96	0.98	0.55	1.2073	0.2767	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.98	1.484	TRUE	0	0	0	6	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	83	7	IGH@	93161	chr14:106331617:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	NO	2	96	0.98	0.48	1.0438	0.088	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.98	1.1318	TRUE	0	0	0	5	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	75	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	153	13	0.34	0.86	0.9432	0.0629	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	0.86	1.0061	TRUE	519	3926	326	965	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	36	51	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	6	0	0.94	1	0.4527	0.6414	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	1.0941	TRUE	1	1	0	28	1	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DMXL1--TNFAIP8	33	16	DMXL1	33756	chr5:118507664:+	TNFAIP8	68062	chr5:118728511:+	ONLY_REF_SPLICE	YES	15	161	0.77	0.23	0.415	0.2012	NEIGHBORS[19554],DMXL1->Dmx_like_1,chr5:118373467-118584833:+,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.77	0.6162	FALSE	0	0	0	2	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	35	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4402	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4402	TRUE	0	0	0	518	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-344E13.3--UBBP4	19	31	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2389	0.3898	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6287	TRUE	23	13	0	54	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	24	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3018	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3018	FALSE	499	1288	110	792	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	12	26	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	90	19	0.3	0.67	0.1509	0.327	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.67	0.4779	TRUE	267	562	48	632	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	16	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	3360	0	0.01	1	0.2012	0.0252	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.2264	FALSE	0	0	0	189	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	10	23	AP003900.6	1122	chr21:11169841:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	1	1	0.97	0.97	0.1258	0.2892	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	0.97	0.415	TRUE	0	0	0	25	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	14	3	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	3	0	0.85	1	0.1761	0.0377	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.2138	TRUE	0	1	0	84	1	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	7	19	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	88	20	0.23	0.57	0.088	0.2389	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.57	0.3269	TRUE	267	562	48	632	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--MMRN1	9	4	CCSER1	6160	chr4:91234198:+	MMRN1	52159	chr4:90872756:+	ONLY_REF_SPLICE	YES	22	1	0.37	0.93	0.1132	0.0503	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.93	0.1635	TRUE	0	0	0	2	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1258	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1258	FALSE	499	1288	110	792	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	9	3	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.1132	0.0377	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.1509	TRUE	0	1	0	84	1	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	9	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	5194	0	0	1	0.1132	0.0126	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1258	TRUE	0	0	0	100	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	7	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	2	0.94	0.89	0.088	0.1132	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.94	0.2012	FALSE	407	2205	196	549	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	9	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1132	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1132	TRUE	0	0	0	81	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1006	0.0377	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1383	FALSE	499	1288	110	792	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--RP11-115D19.1	7	4	CCSER1	1297	chr4:91048982:+	RP11-115D19.1	54237	chr4:90640977:+	ONLY_REF_SPLICE	YES	14	0	0.44	1	0.088	0.0503	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.1383	TRUE	0	2	0	2	2	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DMXL1--TNFAIP8	6	7	DMXL1	33067	chr5:118506975:+	TNFAIP8	68062	chr5:118728511:+	ONLY_REF_SPLICE	YES	21	161	0.38	0.07	0.0755	0.088	NEIGHBORS[19554],DMXL1->Dmx_like_1,chr5:118373467-118584833:+,TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.38	0.1635	FALSE	0	0	0	2	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	6	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.93	0.87	0.0755	0.088	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	0.93	0.1635	FALSE	515	4851	409	746	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	7	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	72	0	0.1	1	0.088	0.0126	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.1006	FALSE	272	151	14	158	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--RP11-115D19.1	6	0	CCSER1	1297	chr4:91048982:+	RP11-115D19.1	55584	chr4:90647535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0755	0	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0755	TRUE	0	0	0	2	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP8--MT-CO1	6	0	MT-ATP8	1063	chrM:8428:+	MT-CO1	4850	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0755	0	LOCAL_REARRANGEMENT:+:[921],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0755	FALSE	3	1	0	9	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	5	3	JSRP1	1204	chr19:2269555:-	RPS28	10765	chr19:8386400:+	INCL_NON_REF_SPLICE	YES	3	1	0.73	0.89	0.0629	0.0377	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.89	0.1006	TRUE	0	1	0	84	1	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	5	3	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	3	1	0.73	0.89	0.0629	0.0377	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.89	0.1006	TRUE	0	1	0	84	1	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	5	2	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	3399	0	0	1	0.0629	0.0252	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0881	FALSE	0	0	0	189	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	5	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0629	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0629	TRUE	0	0	0	81	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	3	7	IGH@	93369	chr14:106331409:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	NO	2	96	0.83	0.09	0.0377	0.088	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.83	0.1257	TRUE	0	0	0	5	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	4	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	6	0.54	0.54	0.0503	0.0377	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.54	0.088	FALSE	16	356	14	466	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--MMRN1	4	1	CCSER1	1297	chr4:91048982:+	MMRN1	41500	chr4:90815875:+	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0503	0.0126	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.0629	TRUE	0	3	0	5	3	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	0	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0503	TRUE	0	0	0	81	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITM2C--MT-CO1	4	0	ITM2C	5714	chr2:231741622:+	MT-CO1	11698	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	ITM2C->chr2:231729354-231743963:+,integral_membrane_protein_2C,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0503	FALSE	0	0	0	6	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND2--MT-TM	4	0	MT-ND2	1017	chrM:4486:+	MT-TM	5076	chrM:4435:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	LOCAL_REARRANGEMENT:+:[1],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-TM->chrM:4402-4469:+,mitochondrially_encoded_tRNA_methionine	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0503	FALSE	74	23	0	9	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	4	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	6	6	0.54	0.54	0.0377	0.0503	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.54	0.088	FALSE	0	9	0	55	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	3	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0.0377	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0754	FALSE	416	2512	207	587	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	3	1	VTI1A	13856	chr10:114428768:+	RP11-57H14.3	23363	chr10:114648494:+	INCL_NON_REF_SPLICE	YES	72	0	0.05	1	0.0377	0.0126	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0503	FALSE	272	151	14	158	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--RP11-115D19.1	2	4	CCSER1	1297	chr4:91048982:+	RP11-115D19.1	50594	chr4:90612436:+	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.0252	0.0503	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.0755	TRUE	0	0	0	2	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	0	EIF1	1121	chr17:39845257:+	RPS28	8168	chr19:8386425:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0377	TRUE	0	0	0	81	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0377	FALSE	499	1288	110	792	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRF--B4GALT2	3	0	PTPRF	27948	chr1:44079386:+	B4GALT2	42159	chr1:44450537:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	{Klijn_CCL:Lymphoid=1},PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F,B4GALT2->beta-1,4-galactosyltransferase_2,chr1:44444615-44456840:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0377	TRUE	0	0	0	2	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	2	0.9	0.82	0.0126	0.1006	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.9	0.1132	FALSE	467	2173	244	435	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STK4--PABPC1L	3	0	STK4	14482	chr20:43629994:+	PABPC1L	42449	chr20:43586978:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	LOCAL_REARRANGEMENT:+:[7439],STK4->Oncogene{Bushman},chr20:43595115-43708600:+,serine/threonine_kinase_4,PABPC1L->chr20:43538703-43587676:+,poly(A)_binding_protein_cytoplasmic_1_like	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	7	IGH@	93981	chr14:106330797:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	NO	2	96	0.8	0.08	0.0126	0.088	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.8	0.1006	TRUE	0	0	0	5	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--SEC22B	2	2	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	193	215	0.02	0.02	0.0252	0.0252	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.0504	TRUE	49	42	7	43	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	6	0.33	0.33	0.0252	0.0126	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.33	0.0378	FALSE	0	48	1	163	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--MMRN1	1	4	CCSER1	7272	chr4:91246858:+	MMRN1	52159	chr4:90872756:+	ONLY_REF_SPLICE	NO	29	1	0.15	0.83	0.0126	0.0503	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.83	0.0629	TRUE	0	0	0	1	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCSER1--RP11-115D19.1	1	4	CCSER1	1297	chr4:91048982:+	RP11-115D19.1	41644	chr4:90508972:+	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0126	0.0503	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,RP11-115D19.1->chr4:90472507-90647654:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.0629	TRUE	0	3	0	1	3	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMTM8--CMTM7	2	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0252	FALSE	118	557	29	88	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--FAM195B	2	0	DANCR	1530	chr4:53579126:+	FAM195B	10467	chr17:79782430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,FAM195B->chr17:79780287-79791178:-	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FXR1--TNFSF13B	2	0	FXR1	3131	chr3:180630524:+	TNFSF13B	34417	chr13:108922448:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+,TNFSF13B->Oncogene{Bushman},chr13:108903588-108960832:+,tumor_necrosis_factor_superfamily_member_13b	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM63B--HSP90AA1	2	0	TMEM63B	1159	chr6:44094809:+	HSP90AA1	24630	chr14:102552715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	TMEM63B->chr6:44094651-44123256:+,transmembrane_protein_63B,HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0126	0.0377	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0503	FALSE	292	1546	117	613	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BPTF--SPCS3	1	1	BPTF	40135	chr17:65972074:+	SPCS3	49285	chr4:177243321:+	ONLY_REF_SPLICE	NO	71	1010	0.03	0	0.0126	0.0126	BPTF->bromodomain_PHD_finger_transcription_factor,chr17:65821640-65980494:+,SPCS3->chr4:177241115-177253396:+,signal_peptidase_complex_subunit_3	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf66--C3P1	1	1	C19orf66	4574	chr19:10200371:+	C3P1	21754	chr19:10162978:+	ONLY_REF_SPLICE	YES	17	0	0.11	1	0.0126	0.0126	LOCAL_REARRANGEMENT:+:[11987],C19orf66->chr19:10196798-10203928:+,chromosome_19_open_reading_frame_66,C3P1->chr19:10148479-10184811:+,complement_component_3_precursor_pseudogene	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIN--HNRNPC	1	1	NIN	7017	chr14:51259430:-	HNRNPC	54550	chr14:21702388:-	ONLY_REF_SPLICE	YES	29	1990	0.06	0	0.0126	0.0126	NIN->Oncogene{Bushman},chr14:51186481-51297839:-,ninein,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS20--UBC	1	1	RPS20	2394	chr8:56985676:-	UBC	12166	chr12:125397813:-	ONLY_REF_SPLICE	YES	8	2851	0.2	0	0.0126	0.0126	GTEx&tcga_normals:2/3694=0.05%,RPS20->chr8:56979854-56987069:-,ribosomal_protein_S20,UBC->chr12:125396150-125401914:-,ubiquitin_C	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.2	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VAPB--GNAS	1	1	VAPB	1396	chr20:56964573:+	GNAS	36861	chr20:57470667:+	ONLY_REF_SPLICE	YES	74	1266	0.03	0	0.0126	0.0126	VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0252	FALSE	0	3	0	7	1	FALSE	ACH-000024
OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF558--RP11-620J15.3	1	1	ZNF558	7296	chr19:8931856:-	RP11-620J15.3	16918	chr12:58325520:-	ONLY_REF_SPLICE	YES	51	73	0.04	0.03	0.0126	0.0126	ZNF558->chr19:8920380-8943004:-,zinc_finger_protein_558,RP11-620J15.3->chr12:58325311-58329958:-	OPM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-000024
BT12_SOFT_TISSUE	TIMM23B--LINC00843	111	48	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2575	0.5438	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BT12_SOFT_TISSUE	1	1	1.8013	TRUE	508	994	45	981	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	50	100	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	15	0	0.91	1	0.5664	1.1329	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BT12_SOFT_TISSUE	0.91	1	1.6993	FALSE	407	2205	196	549	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	56	67	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	15	11	0.89	0.92	0.6344	0.759	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BT12_SOFT_TISSUE	0.89	0.92	1.3934	FALSE	515	4851	409	746	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	TIMM23--RP11-464F9.1	60	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	817	0	0.08	1	0.6797	0.0906	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BT12_SOFT_TISSUE	0.08	1	0.7703	TRUE	519	3926	326	965	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	PCBP2--MTND2P28	57	0	PCBP2	11835	chr12:53856343:+	MTND2P28	25766	chr1:565066:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6457	0	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	BT12_SOFT_TISSUE	1	1	0.6457	TRUE	0	0	0	9	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	14	108	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.98	1	0.1586	1.2235	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BT12_SOFT_TISSUE	0.98	1	1.3821	FALSE	192	492	57	212	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	12	73	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	11	0.98	0.89	0.1359	0.827	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BT12_SOFT_TISSUE	0.89	0.98	0.9629	FALSE	467	2173	244	435	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	MT-TA--MT-TC	29	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3285	0.0227	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BT12_SOFT_TISSUE	1	1	0.3512	FALSE	462	80	0	856	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	1	100	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	15	0	0.87	1	0.0113	1.1329	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BT12_SOFT_TISSUE	0.87	1	1.1442	FALSE	275	511	55	178	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	SLC7A5--MT-ND4L	18	10	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	3923	0	0.01	1	0.2039	0.1133	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT12_SOFT_TISSUE	0.01	1	0.3172	FALSE	0	0	0	23	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	C15orf57--CBX3	10	17	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	78	64	0.26	0.3	0.1133	0.1926	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BT12_SOFT_TISSUE	0.26	0.3	0.3059	TRUE	267	562	48	632	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	SLC1A5--MT-ND4L	14	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1586	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT12_SOFT_TISSUE	1	1	0.1586	FALSE	0	0	0	189	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	IGFBP4--NPM1	13	3	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	2776	2	0.01	0.89	0.1473	0.034	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	BT12_SOFT_TISSUE	0.01	0.89	0.1813	TRUE	0	0	0	38	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	AKAP13--MYL10	9	18	AKAP13	1228	chr15:85924029:+	MYL10	65058	chr7:101272413:-	INCL_NON_REF_SPLICE	YES	32	0	0.46	1	0.102	0.2039	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,MYL10->chr7:101256605-101272576:-,myosin_light_chain_10	BT12_SOFT_TISSUE	0.46	1	0.3059	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	HSPBP1--GRK5	12	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1359	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	BT12_SOFT_TISSUE	1	1	0.1359	TRUE	1	39	0	134	39	FALSE	ACH-000160
BT12_SOFT_TISSUE	MT-ND5--MT-ND6	10	7	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	3	5535	0.85	0	0.1133	0.0793	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	BT12_SOFT_TISSUE	0	0.85	0.1926	FALSE	26	124	4	93	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	IGFBP4--NPM1	10	5	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	2854	2	0.01	0.88	0.1133	0.0566	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	BT12_SOFT_TISSUE	0.01	0.88	0.1699	TRUE	0	0	0	38	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	ZNF654--HMGB2	11	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1246	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	BT12_SOFT_TISSUE	1	1	0.1246	TRUE	0	0	0	518	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	C15orf57--CBX3	7	15	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	76	65	0.22	0.25	0.0793	0.1699	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BT12_SOFT_TISSUE	0.22	0.25	0.2492	TRUE	267	562	48	632	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	RP11-123O10.4--GRIP1	10	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1133	0.034	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BT12_SOFT_TISSUE	1	1	0.1473	FALSE	416	2512	207	587	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	NIPA2--POLA1	10	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1133	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	BT12_SOFT_TISSUE	1	1	0.1133	TRUE	46	1352	75	139	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	PCBP2--MTND2P28	9	2	PCBP2	11799	chr12:53856307:+	MTND2P28	25731	chr1:565031:+	INCL_NON_REF_SPLICE	YES	3081	0	0	1	0.102	0.0227	PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	BT12_SOFT_TISSUE	0	1	0.1247	TRUE	0	0	0	9	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	DLK1--RPS2P55	9	1	DLK1	6559	chr14:101200632:+	RPS2P55	11151	chrX:40794433:-	INCL_NON_REF_SPLICE	YES	7806	84	0	0.11	0.102	0.0113	DLK1->chr14:101192042-101201539:+,delta-like_1_homolog_(Drosophila),RPS2P55->chrX:40794198-40795117:-,ribosomal_protein_S2_pseudogene_55	BT12_SOFT_TISSUE	0	0.11	0.1133	TRUE	0	0	0	1	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	MT-ND5--MT-ND6	6	12	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.95	0.068	0.1359	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	BT12_SOFT_TISSUE	0.95	1	0.2039	FALSE	26	124	4	93	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	MT-ND5--MT-ND6	5	7	MT-ND5	2761	chrM:14097:+	MT-ND6	6169	chrM:14317:-	INCL_NON_REF_SPLICE	YES	0	5647	1	0	0.0566	0.0793	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	BT12_SOFT_TISSUE	0	1	0.1359	FALSE	26	124	4	93	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	REV3L--RPL28	6	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.068	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	BT12_SOFT_TISSUE	1	1	0.068	TRUE	22	156	2	142	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	APP--MT-CO3	5	1	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	2933	18599	0	0	0.0566	0.0113	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BT12_SOFT_TISSUE	0	0	0.0679	FALSE	0	0	0	26	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	AKAP13--MYL10	2	12	AKAP13	1228	chr15:85924029:+	MYL10	66151	chr7:101267544:-	ONLY_REF_SPLICE	NO	32	0	0.3	1	0.0227	0.1359	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,MYL10->chr7:101256605-101272576:-,myosin_light_chain_10	BT12_SOFT_TISSUE	0.3	1	0.1586	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	AKAP13--MYL10	3	8	AKAP13	1228	chr15:85924029:+	MYL10	68215	chr7:101265480:-	ONLY_REF_SPLICE	YES	32	291	0.26	0.04	0.034	0.0906	AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,MYL10->chr7:101256605-101272576:-,myosin_light_chain_10	BT12_SOFT_TISSUE	0.04	0.26	0.1246	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	MT-TA--MT-TC	4	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0.034	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BT12_SOFT_TISSUE	1	1	0.0793	FALSE	462	80	0	856	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	APP--MT-ND2	4	1	APP	28072	chr21:27253964:-	MT-ND2	32211	chrM:4505:+	INCL_NON_REF_SPLICE	NO	2619	0	0	1	0.0453	0.0113	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	BT12_SOFT_TISSUE	0	1	0.0566	FALSE	0	0	0	1	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	MT-TA--MT-TC	3	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0.0566	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BT12_SOFT_TISSUE	1	1	0.0906	FALSE	462	80	0	856	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	PTMA--PTMS	4	1	PTMA	6530	chr2:232577163:+	PTMS	13740	chr12:6879105:+	INCL_NON_REF_SPLICE	NO	5195	324	0	0.02	0.0453	0.0113	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	BT12_SOFT_TISSUE	0	0.02	0.0566	FALSE	0	0	0	16	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	SLC1A5--MT-ND4L	4	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	755	0	0.01	1	0.0453	0.0113	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BT12_SOFT_TISSUE	0.01	1	0.0566	FALSE	0	0	0	189	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	APP--MT-ND2	4	0	APP	11619	chr21:27394230:-	MT-ND2	32998	chrM:5292:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	BT12_SOFT_TISSUE	1	1	0.0453	FALSE	0	1	0	51	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	FTH1--ACTB	4	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	BT12_SOFT_TISSUE	1	1	0.0453	TRUE	1	0	0	97	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	HSPBP1--GRK5	4	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	BT12_SOFT_TISSUE	1	1	0.0453	TRUE	1	39	0	134	39	FALSE	ACH-000160
BT12_SOFT_TISSUE	RP11-275N1.1--NEBL	4	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0453	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	BT12_SOFT_TISSUE	1	1	0.0453	TRUE	0	0	0	21	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	DLK1--PTMA	3	3	DLK1	6493	chr14:101200566:+	PTMA	12110	chr2:232573248:+	INCL_NON_REF_SPLICE	YES	7884	3	0	0.67	0.034	0.034	DLK1->chr14:101192042-101201539:+,delta-like_1_homolog_(Drosophila),PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	BT12_SOFT_TISSUE	0	0.67	0.068	FALSE	0	0	0	1	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	DLK1--PTMA	3	3	DLK1	6480	chr14:101200553:+	PTMA	12096	chr2:232573234:+	INCL_NON_REF_SPLICE	YES	7441	2	0	0.75	0.034	0.034	DLK1->chr14:101192042-101201539:+,delta-like_1_homolog_(Drosophila),PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	BT12_SOFT_TISSUE	0	0.75	0.068	FALSE	0	0	0	1	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	APP--MT-CO3	3	1	APP	11652	chr21:27394197:-	MT-CO3	32390	chrM:9421:+	INCL_NON_REF_SPLICE	YES	3179	18784	0	0	0.034	0.0113	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BT12_SOFT_TISSUE	0	0	0.0453	FALSE	0	0	0	26	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	KYNU--CCT4	3	1	KYNU	3529	chr2:143638999:+	CCT4	29015	chr2:62107529:-	ONLY_REF_SPLICE	YES	139	1946	0.03	0	0.034	0.0113	KYNU->chr2:143635067-143799890:+,kynureninase,CCT4->chaperonin_containing_TCP1_subunit_4,chr2:62095224-62115939:-	BT12_SOFT_TISSUE	0	0.03	0.0453	FALSE	0	0	0	1	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	MT-TA--MT-TC	3	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0.0113	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BT12_SOFT_TISSUE	1	1	0.0453	FALSE	462	80	0	856	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	APP--MT-ND2	3	0	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	BT12_SOFT_TISSUE	1	1	0.034	FALSE	0	1	0	51	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	FTH1--ACTB	3	0	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	BT12_SOFT_TISSUE	1	1	0.034	TRUE	1	0	0	97	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	HSPBP1--GRK5	3	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	BT12_SOFT_TISSUE	1	1	0.034	TRUE	1	39	0	134	39	FALSE	ACH-000160
BT12_SOFT_TISSUE	HSPBP1--GRK5	3	0	HSPBP1	1855	chr19:55790895:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	BT12_SOFT_TISSUE	1	1	0.034	TRUE	1	39	0	134	39	FALSE	ACH-000160
BT12_SOFT_TISSUE	RP11-112L6.4--CNOT1	3	0	RP11-112L6.4	1468	chr20:48789554:+	CNOT1	42641	chr16:58568299:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	RP11-112L6.4->chr20:48789087-48793096:+,CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-	BT12_SOFT_TISSUE	1	1	0.034	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	RP11-275N1.1--NEBL	2	2	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	7	4	0.36	0.5	0.0227	0.0227	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	BT12_SOFT_TISSUE	0.36	0.5	0.0454	TRUE	0	2	0	25	2	FALSE	ACH-000160
BT12_SOFT_TISSUE	DNAJC24--IMMP1L	2	0	DNAJC24	2020	chr11:31392406:+	IMMP1L	34941	chr11:31455117:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Nerve_-_Tibial=2,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Pancreas=1},LOCAL_INVERSION:+:-:[552],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	BT12_SOFT_TISSUE	1	1	0.0227	TRUE	0	4	0	9	1	TRUE	ACH-000160
BT12_SOFT_TISSUE	KCNE1--RCAN1	2	0	KCNE1	2175	chr21:35883399:-	RCAN1	21635	chr21:35896008:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	LOCAL_REARRANGEMENT:-:[867],KCNE1->chr21:35818988-35884573:-,potassium_voltage-gated_channel_subfamily_E_regulatory_subunit_1,RCAN1->chr21:35885440-35987441:-,regulator_of_calcineurin_1	BT12_SOFT_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	KYNU--CCT4	2	0	KYNU	1239	chr2:143635305:+	CCT4	29015	chr2:62107529:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	KYNU->chr2:143635067-143799890:+,kynureninase,CCT4->chaperonin_containing_TCP1_subunit_4,chr2:62095224-62115939:-	BT12_SOFT_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	BT12_SOFT_TISSUE	1	1	0.0227	TRUE	3	14	2	43	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	BT12_SOFT_TISSUE	1	1	0.0227	TRUE	1	10	0	18	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	RP11-968O1.5--ANKLE2	2	0	RP11-968O1.5	2576	chr12:109551220:+	ANKLE2	13666	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	RP11-968O1.5->chr12:109549023-109563399:+,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	BT12_SOFT_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BT12_SOFT_TISSUE	1	1	0.0227	TRUE	5	8	0	33	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	TNK2--RPS5	2	0	TNK2	9274	chr3:195615297:-	RPS5	34386	chr19:58905864:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	TNK2->chr3:195590235-195638816:-,tyrosine_kinase_non_receptor_2,RPS5->chr19:58897767-58906173:+,ribosomal_protein_S5	BT12_SOFT_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	VCL--ADK	2	0	VCL	1262	chr10:75758133:+	ADK	43773	chr10:76429941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[31042],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ADK->adenosine_kinase,chr10:75910960-76469061:+	BT12_SOFT_TISSUE	1	1	0.0227	FALSE	0	2	0	3	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	WBSCR27--PPIA	2	0	WBSCR27	2466	chr7:73255400:-	PPIA	12875	chr7:44840886:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	WBSCR27->Williams_Beuren_syndrome_chromosome_region_27,chr7:73248920-73256865:-,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	BT12_SOFT_TISSUE	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0113	0.034	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BT12_SOFT_TISSUE	1	1	0.0453	FALSE	93	270	15	244	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	C7orf50--PRKAR1B	1	1	C7orf50	6340	chr7:1067894:-	PRKAR1B	32423	chr7:624205:-	ONLY_REF_SPLICE	YES	289	136	0.01	0.01	0.0113	0.0113	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	BT12_SOFT_TISSUE	0.01	0.01	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	CD44--SAT1	1	1	CD44	21865	chr11:35243279:+	SAT1	32883	chrX:23803445:+	ONLY_REF_SPLICE	YES	3403	7828	0	0	0.0113	0.0113	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,SAT1->chrX:23801290-23804343:+,spermidine/spermine_N1-acetyltransferase_1	BT12_SOFT_TISSUE	0	0	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	MOSPD2--PRRG1	1	1	MOSPD2	1318	chrX:14891880:+	PRRG1	25163	chrX:37265462:+	ONLY_REF_SPLICE	YES	23	1	0.08	0.67	0.0113	0.0113	MOSPD2->chrX:14891563-14940449:+,motile_sperm_domain_containing_2,PRRG1->chrX:37208528-37316548:+,proline_rich_and_Gla_domain_1	BT12_SOFT_TISSUE	0.08	0.67	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000160
BT12_SOFT_TISSUE	RCC1--EEF1D	1	1	RCC1	2920	chr1:28835417:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	73	319	0.03	0.01	0.0113	0.0113	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	BT12_SOFT_TISSUE	0.01	0.03	0.0226	FALSE	1	10	0	18	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	2	191	0.5	0.01	0.0113	0.0113	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	BT12_SOFT_TISSUE	0.01	0.5	0.0226	FALSE	2	31	0	60	0	FALSE	ACH-000160
BT12_SOFT_TISSUE	YTHDF2--GLE1	1	1	YTHDF2	2718	chr1:29064850:+	GLE1	13313	chr9:131271155:+	ONLY_REF_SPLICE	YES	371	106	0.01	0.02	0.0113	0.0113	YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	BT12_SOFT_TISSUE	0.01	0.02	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000160
OELE_OVARY	TIMM23B--LINC00843	62	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.7265	0.3398	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OELE_OVARY	0.98	1	1.0663	TRUE	508	994	45	981	0	FALSE	ACH-000494
OELE_OVARY	HLA-A--MT-ND1	40	0	HLA-A	2742	chr6:29910778:+	MT-ND1	8756	chrM:3437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4687	0	HLA-A->chr6:29909037-29913661:+,major_histocompatibility_complex,_class_I,_A,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	OELE_OVARY	1	1	0.4687	FALSE	1	0	0	11	0	FALSE	ACH-000494
OELE_OVARY	TIMM23--RP11-464F9.1	37	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	367	6	0.1	0.87	0.4336	0.0234	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OELE_OVARY	0.1	0.87	0.457	TRUE	519	3926	326	965	0	FALSE	ACH-000494
OELE_OVARY	ZNF654--HMGB2	35	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4101	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OELE_OVARY	1	1	0.4101	TRUE	0	0	0	518	0	FALSE	ACH-000494
OELE_OVARY	MT-ND6--MT-ND5	34	0	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3984	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	OELE_OVARY	1	1	0.3984	FALSE	101	855	57	72	0	FALSE	ACH-000494
OELE_OVARY	MT-TA--MT-TC	32	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.375	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OELE_OVARY	1	1	0.375	FALSE	462	80	0	856	0	FALSE	ACH-000494
OELE_OVARY	OR51S1--TP53I11	25	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.293	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	OELE_OVARY	1	1	0.293	TRUE	402	216	10	229	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-CO1	20	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2344	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OELE_OVARY	1	1	0.2344	FALSE	183	104	9	328	0	FALSE	ACH-000494
OELE_OVARY	HSP90AB1--MT-RNR2	18	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3156	0	0.01	1	0.2109	0.0117	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	0.01	1	0.2226	FALSE	13	9	0	364	0	FALSE	ACH-000494
OELE_OVARY	C15orf57--CBX3	11	17	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	90	42	0.24	0.4	0.1289	0.1992	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OELE_OVARY	0.24	0.4	0.3281	TRUE	267	562	48	632	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-RNR2	15	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1758	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	1	1	0.1758	FALSE	63	17	1	58	0	FALSE	ACH-000494
OELE_OVARY	RP4-565E6.1--HYDIN	13	5	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1523	0.0586	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	OELE_OVARY	1	1	0.2109	TRUE	456	1387	91	133	0	FALSE	ACH-000494
OELE_OVARY	MT-CO1--MT-RNR2	10	14	MT-CO1	1642	chrM:6545:+	MT-RNR2	5587	chrM:1715:+	INCL_NON_REF_SPLICE	YES	28678	0	0	1	0.1172	0.1641	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	0	1	0.2813	FALSE	44	51	6	21	0	FALSE	ACH-000494
OELE_OVARY	NIPA2--POLA1	13	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1523	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	OELE_OVARY	1	1	0.1523	TRUE	46	1352	75	139	0	FALSE	ACH-000494
OELE_OVARY	MT-CO1--MT-RNR2	10	5	MT-CO1	1603	chrM:6506:+	MT-RNR2	5550	chrM:1678:+	INCL_NON_REF_SPLICE	YES	25279	0	0	1	0.1172	0.0586	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	0	1	0.1758	FALSE	44	51	6	21	0	FALSE	ACH-000494
OELE_OVARY	MT-ND6--MT-TE	11	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1289	0.0117	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OELE_OVARY	1	1	0.1406	FALSE	499	1288	110	792	0	FALSE	ACH-000494
OELE_OVARY	MT-ND6--MT-TE	8	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0937	0.0703	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OELE_OVARY	0.93	1	0.164	FALSE	499	1288	110	792	0	FALSE	ACH-000494
OELE_OVARY	CALM3--MT-ND4L	8	5	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2219	0	0.01	1	0.0937	0.0586	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OELE_OVARY	0.01	1	0.1523	FALSE	1	1	0	107	0	FALSE	ACH-000494
OELE_OVARY	MT-CO1--MT-RNR2	4	21	MT-CO1	1653	chrM:6556:+	MT-RNR2	5598	chrM:1726:+	INCL_NON_REF_SPLICE	NO	29627	0	0	1	0.0469	0.2461	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	0	1	0.293	FALSE	44	51	6	21	0	FALSE	ACH-000494
OELE_OVARY	MT-CO1--MT-RNR2	3	25	MT-CO1	1976	chrM:6879:+	MT-RNR2	5563	chrM:1691:+	INCL_NON_REF_SPLICE	YES	29045	0	0	1	0.0352	0.293	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	0	1	0.3282	FALSE	44	51	6	21	0	FALSE	ACH-000494
OELE_OVARY	MT-CO1--MT-RNR2	4	21	MT-CO1	1653	chrM:6556:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	29627	0	0	1	0.0469	0.2461	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	0	1	0.293	FALSE	44	51	6	21	0	FALSE	ACH-000494
OELE_OVARY	MT-ND6--MT-TE	9	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1055	0.0117	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OELE_OVARY	1	1	0.1172	FALSE	499	1288	110	792	0	FALSE	ACH-000494
OELE_OVARY	HSPBP1--GRK5	9	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1055	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	OELE_OVARY	1	1	0.1055	TRUE	1	39	0	134	39	FALSE	ACH-000494
OELE_OVARY	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1055	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OELE_OVARY	1	1	0.1055	TRUE	0	0	0	434	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-CO1	8	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0937	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OELE_OVARY	1	1	0.0937	FALSE	183	104	9	328	0	FALSE	ACH-000494
OELE_OVARY	MT-CO1--MT-RNR2	6	8	MT-CO1	1642	chrM:6545:+	MT-RNR2	6082	chrM:2210:+	INCL_NON_REF_SPLICE	YES	28678	11345	0	0	0.0703	0.0937	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	0	0	0.164	FALSE	44	51	6	21	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-RNR2	7	1	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	11141	11081	0	0	0.082	0.0117	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	0	0	0.0937	FALSE	63	17	1	58	0	FALSE	ACH-000494
OELE_OVARY	CTD-2337A12.1--CAST	6	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	209	1	0.04	0.0703	0.0234	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	OELE_OVARY	0.04	1	0.0937	TRUE	347	1186	183	220	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-CO2	5	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	36	9	0.23	0.55	0.0586	0.0703	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OELE_OVARY	0.23	0.55	0.1289	FALSE	59	21	0	114	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-RNR2	6	2	MT-ATP6	1158	chrM:8684:+	MT-RNR2	4726	chrM:1715:+	INCL_NON_REF_SPLICE	YES	12190	0	0	1	0.0703	0.0234	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	0	1	0.0937	FALSE	63	17	1	58	0	FALSE	ACH-000494
OELE_OVARY	MT-CO1--MT-RNR2	4	10	MT-CO1	1635	chrM:6538:+	MT-RNR2	5554	chrM:1682:+	INCL_NON_REF_SPLICE	YES	27995	0	0	1	0.0469	0.1172	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	0	1	0.1641	FALSE	44	51	6	21	0	FALSE	ACH-000494
OELE_OVARY	FTH1--ACTB	6	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	935	0	0.01	1	0.0703	0.0117	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	OELE_OVARY	0.01	1	0.082	FALSE	1	0	0	97	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-RNR2	5	5	MT-ATP6	1516	chrM:9042:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	YES	6303	11318	0	0	0.0586	0.0586	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	0	0	0.1172	FALSE	63	17	1	58	0	FALSE	ACH-000494
OELE_OVARY	MT-CO1--MT-RNR2	3	13	MT-CO1	1959	chrM:6862:+	MT-RNR2	6113	chrM:2241:+	INCL_NON_REF_SPLICE	YES	29774	11461	0	0	0.0352	0.1523	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	0	0	0.1875	FALSE	44	51	6	21	0	FALSE	ACH-000494
OELE_OVARY	APP--MT-ND2	6	0	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OELE_OVARY	1	1	0.0703	FALSE	0	1	0	51	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-RNR2	6	0	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	1	1	0.0703	FALSE	63	17	1	58	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-RNR2	6	0	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	1	1	0.0703	FALSE	63	17	1	58	0	FALSE	ACH-000494
OELE_OVARY	MT-ND6--MT-ND5	6	0	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	OELE_OVARY	1	1	0.0703	FALSE	101	855	57	72	0	FALSE	ACH-000494
OELE_OVARY	EEF2--MT2A	3	10	EEF2	7125	chr19:3979343:-	MT2A	13651	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	5182	15	0	0.46	0.0352	0.1172	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	OELE_OVARY	0	0.46	0.1524	TRUE	0	0	0	6	0	FALSE	ACH-000494
OELE_OVARY	EEF2--MT2A	4	6	EEF2	9846	chr19:3976466:-	MT2A	13683	chr16:56642535:+	INCL_NON_REF_SPLICE	YES	2454	20	0	0.33	0.0469	0.0703	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	OELE_OVARY	0	0.33	0.1172	TRUE	1	0	0	19	0	FALSE	ACH-000494
OELE_OVARY	MT-ND6--MT-TE	4	6	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0469	0.0703	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OELE_OVARY	0.83	1	0.1172	FALSE	499	1288	110	792	0	FALSE	ACH-000494
OELE_OVARY	MYH9--MT2A	5	2	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	1003	14	0.01	0.33	0.0586	0.0234	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	OELE_OVARY	0.01	0.33	0.082	FALSE	0	0	0	24	0	FALSE	ACH-000494
OELE_OVARY	MT-ND5--MT-ND6	4	5	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	2	3260	0.82	0	0.0469	0.0586	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	OELE_OVARY	0	0.82	0.1055	FALSE	26	124	4	93	0	FALSE	ACH-000494
OELE_OVARY	RP11-96H19.1--RP11-446N19.1	3	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.71	1	0.0352	0.1055	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OELE_OVARY	0.71	1	0.1407	FALSE	407	2205	196	549	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-CO1	4	4	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3492	29776	0	0	0.0469	0.0469	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OELE_OVARY	0	0	0.0938	FALSE	183	104	9	328	0	FALSE	ACH-000494
OELE_OVARY	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0586	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	OELE_OVARY	1	1	0.0586	TRUE	22	156	2	142	0	FALSE	ACH-000494
OELE_OVARY	MT-ND5--MT-ND6	3	7	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0.082	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	OELE_OVARY	1	1	0.1172	FALSE	26	124	4	93	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-CO2	3	6	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	38	9	0.19	0.5	0.0352	0.0703	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OELE_OVARY	0.19	0.5	0.1055	FALSE	59	21	0	114	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-CO1	4	1	MT-ATP6	1177	chrM:8703:+	MT-CO1	4735	chrM:5957:+	INCL_NON_REF_SPLICE	YES	13266	0	0	1	0.0469	0.0117	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OELE_OVARY	0	1	0.0586	FALSE	182	97	9	327	0	FALSE	ACH-000494
OELE_OVARY	MT-CO1--MT-RNR2	3	5	MT-CO1	1628	chrM:6531:+	MT-RNR2	6116	chrM:2244:+	INCL_NON_REF_SPLICE	YES	27192	11272	0	0	0.0352	0.0586	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	0	0	0.0938	FALSE	44	51	6	21	0	FALSE	ACH-000494
OELE_OVARY	RP11-96H19.1--RP11-446N19.1	2	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	1	0.69	0.92	0.0234	0.1055	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OELE_OVARY	0.69	0.92	0.1289	FALSE	515	4851	409	746	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-CO1	4	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OELE_OVARY	1	1	0.0469	FALSE	183	104	9	328	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-CO2	3	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	36	13	0.16	0.35	0.0352	0.0469	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OELE_OVARY	0.16	0.35	0.0821	FALSE	59	21	0	114	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1110	chrM:8636:+	MT-RNR2	5247	chrM:2236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	1	1	0.0469	FALSE	63	17	1	58	0	FALSE	ACH-000494
OELE_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OELE_OVARY	1	1	0.0469	FALSE	499	1288	110	792	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-CO2	3	2	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	19	10	0.21	0.33	0.0352	0.0234	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OELE_OVARY	0.21	0.33	0.0586	FALSE	59	21	0	114	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-CO2	3	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	21	11	0.19	0.31	0.0352	0.0234	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OELE_OVARY	0.19	0.31	0.0586	FALSE	59	21	0	114	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5314	chrM:6536:+	INCL_NON_REF_SPLICE	YES	12186	27782	0	0	0.0352	0.0117	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OELE_OVARY	0	0	0.0469	FALSE	183	104	9	328	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	11601	0	0	1	0.0352	0.0117	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	0	1	0.0469	FALSE	63	17	1	58	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	11601	11445	0	0	0.0352	0.0117	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	0	0	0.0469	FALSE	63	17	1	58	0	FALSE	ACH-000494
OELE_OVARY	MT-CO1--MT-RNR2	3	1	MT-CO1	1453	chrM:6356:+	MT-RNR2	6134	chrM:2262:+	INCL_NON_REF_SPLICE	YES	25623	11317	0	0	0.0352	0.0117	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	0	0	0.0469	FALSE	44	51	6	21	0	FALSE	ACH-000494
OELE_OVARY	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	1	0.91	0.91	0.0117	0.1055	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OELE_OVARY	0.91	0.91	0.1172	FALSE	467	2173	244	435	0	FALSE	ACH-000494
OELE_OVARY	FLNA--MT-CO2	3	0	FLNA	16633	chrX:153582033:-	MT-CO2	24775	chrM:7586:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	FLNA->chrX:153576892-153603006:-,filamin_A,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OELE_OVARY	1	1	0.0352	FALSE	0	0	0	5	0	FALSE	ACH-000494
OELE_OVARY	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OELE_OVARY	1	1	0.0352	FALSE	63	17	1	58	0	FALSE	ACH-000494
OELE_OVARY	MT-ND6--MT-ND5	3	0	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	OELE_OVARY	1	1	0.0352	FALSE	101	855	57	72	0	FALSE	ACH-000494
OELE_OVARY	PSMB8--MT2A	3	0	PSMB8	2684	chr6:32810797:-	MT2A	8371	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0352	0	PSMB8->chr6:32808494-32812480:-,proteasome_subunit_beta_8,MT2A->chr16:56642111-56643409:+,metallothionein_2A	OELE_OVARY	1	1	0.0352	TRUE	0	0	0	3	0	TRUE	ACH-000494
OELE_OVARY	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0.0117	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OELE_OVARY	1	1	0.0351	FALSE	93	270	15	244	0	FALSE	ACH-000494
OELE_OVARY	RPSAP52--HMGA2	2	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	27	119	0.1	0.02	0.0234	0.0117	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	OELE_OVARY	0.02	0.1	0.0351	FALSE	0	59	0	125	0	FALSE	ACH-000494
OELE_OVARY	AC091969.1--EPB41L5	2	0	AC091969.1	12214	chr5:152064221:-	EPB41L5	39186	chr2:120885264:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	AC091969.1->chr5:151998525-152603103:-,EPB41L5->chr2:120770581-120936695:+,erythrocyte_membrane_protein_band_4.1_like_5	OELE_OVARY	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000494
OELE_OVARY	APBA2--B2M	2	0	APBA2	6931	chr15:29213952:+	B2M	35330	chr15:45007621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	APBA2->amyloid_beta_precursor_protein_binding_family_A_member_2,chr15:29129629-29410518:+,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	OELE_OVARY	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000494
OELE_OVARY	GFM2--ENOSF1	2	0	GFM2	10794	chr5:74041503:-	ENOSF1	29387	chr18:694334:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GFM2->G_elongation_factor,_mitochondrial_2,chr5:74017029-74063196:-,ENOSF1->chr18:670324-712676:-,enolase_superfamily_member_1	OELE_OVARY	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000494
OELE_OVARY	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OELE_OVARY	1	1	0.0234	FALSE	292	1546	117	613	0	FALSE	ACH-000494
OELE_OVARY	PDCD6--BASP1	2	0	PDCD6	2152	chr5:272887:+	BASP1	25455	chr5:17275317:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	OELE_OVARY	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000494
OELE_OVARY	PRR16--CTD-2334D19.1	2	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	OELE_OVARY	1	1	0.0234	FALSE	56	216	12	147	0	FALSE	ACH-000494
OELE_OVARY	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	OELE_OVARY	1	1	0.0234	TRUE	458	1351	185	561	0	FALSE	ACH-000494
OELE_OVARY	SPAG9--TEX10	2	0	SPAG9	2633	chr17:49156945:-	TEX10	58142	chr9:103082680:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,TEX10->chr9:103064359-103115221:-,testis_expressed_10	OELE_OVARY	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000494
OELE_OVARY	TTLL4--COL6A3	2	0	TTLL4	8068	chr2:219605307:+	COL6A3	62015	chr2:238249793:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	TTLL4->chr2:219575568-219620139:+,tubulin_tyrosine_ligase_like_4,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	OELE_OVARY	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000494
OELE_OVARY	C15orf57--CBX3	1	3	C15orf57	2548	chr15:40854971:-	CBX3	23883	chr7:26248086:+	ONLY_REF_SPLICE	NO	88	1527	0.04	0	0.0117	0.0352	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OELE_OVARY	0	0.04	0.0469	FALSE	0	0	0	2	0	FALSE	ACH-000494
OELE_OVARY	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	10	0	0.23	1	0.0117	0.0234	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OELE_OVARY	0.23	1	0.0351	FALSE	164	806	69	479	0	FALSE	ACH-000494
OELE_OVARY	CTC-228N24.2--CTC-228N24.3	1	1	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	NO	0	73	1	0.03	0.0117	0.0117	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	OELE_OVARY	0.03	1	0.0234	TRUE	0	1	0	12	1	FALSE	ACH-000494
OELE_OVARY	HOOK2--HGS	1	1	HOOK2	6674	chr19:12886219:-	HGS	33230	chr17:79663387:+	ONLY_REF_SPLICE	NO	106	234	0.02	0.01	0.0117	0.0117	HOOK2->chr19:12873817-12983554:-,hook_microtubule-tethering_protein_2,HGS->chr17:79650356-79670168:+,hepatocyte_growth_factor-regulated_tyrosine_kinase_substrate	OELE_OVARY	0.01	0.02	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000494
OELE_OVARY	KCNJ15--TTC3	1	1	KCNJ15	3597	chr21:39629107:+	TTC3	42559	chr21:38480692:+	ONLY_REF_SPLICE	YES	158	66	0.01	0.03	0.0117	0.0117	KCNJ15->chr21:39529128-39679279:+,potassium_voltage-gated_channel_subfamily_J_member_15,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	OELE_OVARY	0.01	0.03	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000494
OELE_OVARY	METAP1--EIF4E	1	1	METAP1	1248	chr4:99917018:+	EIF4E	31345	chr4:99812483:-	ONLY_REF_SPLICE	YES	302	493	0.01	0	0.0117	0.0117	{Klijn_CCL:Sarcomatoid=1,Stomach=1},LOCAL_INVERSION:+:-:[64983],METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1,EIF4E->Oncogene{Bushman},chr4:99792835-99851788:-,eukaryotic_translation_initiation_factor_4E	OELE_OVARY	0	0.01	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000494
OELE_OVARY	NGDN--PRPF39	1	1	NGDN	2290	chr14:23940186:+	PRPF39	13250	chr14:45564424:+	ONLY_REF_SPLICE	YES	369	176	0.01	0.01	0.0117	0.0117	NGDN->chr14:23938897-23979071:+,neuroguidin,PRPF39->chr14:45553302-45585485:+,pre-mRNA_processing_factor_39	OELE_OVARY	0.01	0.01	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000494
OELE_OVARY	POLE4--RP11-355F16.1	1	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	NO	239	0	0.01	1	0.0117	0.0117	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	OELE_OVARY	0.01	1	0.0234	FALSE	5	7	0	37	0	FALSE	ACH-000494
OELE_OVARY	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0117	0.0117	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OELE_OVARY	1	1	0.0234	FALSE	416	2512	207	587	0	FALSE	ACH-000494
OELE_OVARY	RP11-155G15.2--RP11-1E3.1	1	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0117	0.0117	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	OELE_OVARY	1	1	0.0234	FALSE	46	201	11	112	0	FALSE	ACH-000494
OELE_OVARY	TGOLN2--LAPTM4B	1	1	TGOLN2	4002	chr2:85552038:-	LAPTM4B	15361	chr8:98817581:+	ONLY_REF_SPLICE	YES	324	1240	0.01	0	0.0117	0.0117	TGOLN2->chr2:85545147-85555548:-,trans-golgi_network_protein_2,LAPTM4B->chr8:98787285-98865241:+,lysosomal_protein_transmembrane_4_beta	OELE_OVARY	0	0.01	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000494
OELE_OVARY	TMEM123--BIRC2	1	1	TMEM123	5695	chr11:102319543:-	BIRC2	22451	chr11:102248227:+	ONLY_REF_SPLICE	YES	656	217	0	0.01	0.0117	0.0117	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},{Klijn_CCL:Brain=1},LOCAL_INVERSION:-:+:[17662],TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	OELE_OVARY	0	0.01	0.0234	FALSE	1	3	0	8	0	FALSE	ACH-000494
NCIH2227_LUNG	HSPBP1--GRK5	182	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.2594	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH2227_LUNG	1	1	2.2594	TRUE	1	39	0	134	39	FALSE	ACH-000610
NCIH2227_LUNG	SOX2-OT--GUSBP2	139	82	SOX2-OT	7662	chr3:180893371:+	GUSBP2	42006	chr6:26856976:-	ONLY_REF_SPLICE	YES	175	11	0.56	0.95	1.7256	1.018	SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+,GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2	NCIH2227_LUNG	0.56	0.95	2.7436	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	TIMM23B--LINC00843	63	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.7821	0.3848	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2227_LUNG	0.98	1	1.1669	TRUE	508	994	45	981	0	FALSE	ACH-000610
NCIH2227_LUNG	MT-TA--MT-TC	55	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6828	0.0621	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2227_LUNG	1	1	0.7449	FALSE	462	80	0	856	0	FALSE	ACH-000610
NCIH2227_LUNG	POTEG--RP11-536C10.17	40	28	POTEG	6522	chr14:19563541:+	RP11-536C10.17	22528	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	31	0	0.69	1	0.4966	0.3476	POTEG->POTE_ankyrin_domain_family_member_G,chr14:19553365-19590078:+,RP11-536C10.17->chr14:19390865-19391038:+	NCIH2227_LUNG	0.69	1	0.8442	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	TIMM23--RP11-464F9.1	32	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	181	1	0.15	0.97	0.3973	0.0124	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2227_LUNG	0.15	0.97	0.4097	TRUE	519	3926	326	965	0	FALSE	ACH-000610
NCIH2227_LUNG	AL589743.1--RP11-536C10.17	25	2	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	19	0	0.59	1	0.3104	0.0248	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	NCIH2227_LUNG	0.59	1	0.3352	TRUE	0	33	0	45	33	FALSE	ACH-000610
NCIH2227_LUNG	AP000525.9--LA16c-60G3.6	24	3	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	19	0	0.59	1	0.2979	0.0372	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH2227_LUNG	0.59	1	0.3351	TRUE	0	42	0	133	42	FALSE	ACH-000610
NCIH2227_LUNG	PLXDC1--TAF13	20	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2483	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH2227_LUNG	1	1	0.2483	TRUE	7	10	0	216	0	FALSE	ACH-000610
NCIH2227_LUNG	RP11-680G10.1--GSE1	16	13	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	14	1	0.67	0.1986	0.1614	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2227_LUNG	0.67	1	0.36	TRUE	458	1351	185	561	0	FALSE	ACH-000610
NCIH2227_LUNG	PPM1H--CACNA1C	13	9	PPM1H	5708	chr12:63195596:-	CACNA1C	27040	chr12:2558142:+	ONLY_REF_SPLICE	YES	60	3	0.27	0.88	0.1614	0.1117	PPM1H->chr12:63037762-63328817:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1H,CACNA1C->calcium_voltage-gated_channel_subunit_alpha1_C,chr12:2079952-2802108:+	NCIH2227_LUNG	0.27	0.88	0.2731	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	RP1-34H18.1--NAV3	11	6	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1366	0.0745	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH2227_LUNG	1	1	0.2111	TRUE	254	575	65	124	0	FALSE	ACH-000610
NCIH2227_LUNG	SBNO1--RILPL1	9	9	SBNO1	1143	chr12:123849248:-	RILPL1	44333	chr12:123983312:-	ONLY_REF_SPLICE	YES	51	26	0.26	0.41	0.1117	0.1117	SBNO1->Oncogene{Bushman},chr12:123773656-123849390:-,strawberry_notch_homolog_1_(Drosophila),RILPL1->Rab_interacting_lysosomal_protein-like_1,chr12:123955925-124018265:-	NCIH2227_LUNG	0.26	0.41	0.2234	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	SOX2-OT--GUSBP2	6	20	SOX2-OT	7662	chr3:180893371:+	GUSBP2	44240	chr6:26853222:-	ONLY_REF_SPLICE	YES	175	116	0.13	0.18	0.0745	0.2483	SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+,GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2	NCIH2227_LUNG	0.13	0.18	0.3228	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	HSP90AB1--MT-RNR2	10	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1826	0	0.01	1	0.1241	0.0372	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2227_LUNG	0.01	1	0.1613	FALSE	13	9	0	364	0	FALSE	ACH-000610
NCIH2227_LUNG	RP11-680G10.1--GSE1	9	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	100	1	0.13	0.1117	0.0745	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2227_LUNG	0.13	1	0.1862	TRUE	465	1949	224	605	0	FALSE	ACH-000610
NCIH2227_LUNG	RP11-123O10.4--GRIP1	9	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1117	0.0248	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2227_LUNG	1	1	0.1365	FALSE	416	2512	207	587	0	FALSE	ACH-000610
NCIH2227_LUNG	MAF--RP11-679B19.2	8	4	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0993	0.0497	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	NCIH2227_LUNG	1	1	0.149	TRUE	48	25	3	38	0	FALSE	ACH-000610
NCIH2227_LUNG	WDR62--CLC	6	7	WDR62	3519	chr19:36550932:+	CLC	36178	chr19:40225133:-	ONLY_REF_SPLICE	YES	98	28	0.12	0.32	0.0745	0.0869	WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+,CLC->Charcot-Leyden_crystal_galectin,chr19:40221890-40228668:-	NCIH2227_LUNG	0.12	0.32	0.1614	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	MT-TA--MT-TC	7	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0869	0.0124	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2227_LUNG	1	1	0.0993	FALSE	462	80	0	856	0	FALSE	ACH-000610
NCIH2227_LUNG	C15orf57--CBX3	6	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	16	27	0.33	0.23	0.0745	0.0248	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2227_LUNG	0.23	0.33	0.0993	TRUE	267	562	48	632	0	FALSE	ACH-000610
NCIH2227_LUNG	MT-TA--MT-TC	5	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0.0621	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2227_LUNG	1	1	0.1242	FALSE	462	80	0	856	0	FALSE	ACH-000610
NCIH2227_LUNG	MT-TA--MT-TC	4	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0.0621	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2227_LUNG	1	1	0.1118	FALSE	462	80	0	856	0	FALSE	ACH-000610
NCIH2227_LUNG	GNGT1--AC002076.10	4	4	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	4	0	0.67	1	0.0497	0.0497	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	NCIH2227_LUNG	0.67	1	0.0994	FALSE	0	28	0	37	0	FALSE	ACH-000610
NCIH2227_LUNG	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2227_LUNG	1	1	0.0621	FALSE	63	17	1	58	0	FALSE	ACH-000610
NCIH2227_LUNG	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1100	chrM:8626:+	MT-RNR2	5246	chrM:2235:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0621	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2227_LUNG	1	1	0.0621	FALSE	63	17	1	58	0	FALSE	ACH-000610
NCIH2227_LUNG	SOX2-OT--GUSBP2	3	8	SOX2-OT	7662	chr3:180893371:+	GUSBP2	45325	chr6:26851296:-	ONLY_REF_SPLICE	YES	175	42	0.06	0.21	0.0372	0.0993	SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+,GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2	NCIH2227_LUNG	0.06	0.21	0.1365	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	MT-ATP6--MT-RNR2	4	3	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	8490	0	0	1	0.0497	0.0372	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2227_LUNG	0	1	0.0869	FALSE	63	17	1	58	0	FALSE	ACH-000610
NCIH2227_LUNG	CTD-2251F13.1--PRKD1	4	1	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0497	0.0124	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH2227_LUNG	0.71	1	0.0621	TRUE	0	3	0	8	3	TRUE	ACH-000610
NCIH2227_LUNG	MT-TA--MT-TC	3	5	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0.0621	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2227_LUNG	1	1	0.0993	FALSE	462	80	0	856	0	FALSE	ACH-000610
NCIH2227_LUNG	SGCE--PEG10	4	0	SGCE	1220	chr7:94285302:-	PEG10	20543	chr7:94292646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0497	0	LOCAL_INVERSION:-:+:[116],SGCE->chr7:94214542-94285521:-,sarcoglycan_epsilon,PEG10->Oncogene{Bushman},chr7:94285637-94299007:+,paternally_expressed_10	NCIH2227_LUNG	1	1	0.0497	TRUE	0	1	0	2	1	TRUE	ACH-000610
NCIH2227_LUNG	GUSBP2--SOX2-OT	3	3	GUSBP2	3396	chr6:26892899:-	SOX2-OT	23813	chr3:181281508:+	ONLY_REF_SPLICE	YES	10	174	0.38	0.03	0.0372	0.0372	GUSBP2->chr6:26839263-26924333:-,glucuronidase,_beta_pseudogene_2,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	NCIH2227_LUNG	0.03	0.38	0.0744	TRUE	0	0	0	1	0	FALSE	ACH-000610
NCIH2227_LUNG	HSP90AB1--MT-RNR2	3	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1830	0	0	1	0.0372	0.0372	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2227_LUNG	0	1	0.0744	FALSE	13	9	0	364	0	FALSE	ACH-000610
NCIH2227_LUNG	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	8113	7487	0	0	0.0372	0.0372	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2227_LUNG	0	0	0.0744	FALSE	63	17	1	58	0	FALSE	ACH-000610
NCIH2227_LUNG	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	7351	0	0	1	0.0372	0.0372	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2227_LUNG	0	1	0.0744	FALSE	63	17	1	58	0	FALSE	ACH-000610
NCIH2227_LUNG	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1158	chrM:8684:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	8975	8043	0	0	0.0372	0.0372	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2227_LUNG	0	0	0.0744	FALSE	63	17	1	58	0	FALSE	ACH-000610
NCIH2227_LUNG	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	8490	7827	0	0	0.0372	0.0372	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2227_LUNG	0	0	0.0744	FALSE	63	17	1	58	0	FALSE	ACH-000610
NCIH2227_LUNG	MT-CO3--MT-ATP6	3	2	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.62	0.0372	0.0248	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2227_LUNG	0.62	1	0.062	FALSE	189	492	56	216	0	FALSE	ACH-000610
NCIH2227_LUNG	GNGT1--AC002076.10	2	4	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0248	0.0497	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	NCIH2227_LUNG	0.55	1	0.0745	FALSE	0	10	0	30	0	FALSE	ACH-000610
NCIH2227_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2227_LUNG	1	1	0.0372	FALSE	63	17	1	58	0	FALSE	ACH-000610
NCIH2227_LUNG	RP11-444D3.1--SOX5	3	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH2227_LUNG	1	1	0.0372	TRUE	477	1352	189	275	0	FALSE	ACH-000610
NCIH2227_LUNG	RP11-114H21.2--CTB-1I21.1	1	7	RP11-114H21.2	1209	chr5:135802574:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0124	0.0869	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	NCIH2227_LUNG	0.8	1	0.0993	TRUE	0	2	0	12	2	TRUE	ACH-000610
NCIH2227_LUNG	AFF2--CNTNAP5	2	2	AFF2	1526	chrX:147582664:+	CNTNAP5	39852	chr2:124979282:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0248	0.0248	AFF2->AF4/FMR2_family_member_2,chrX:147582139-148082193:+,CNTNAP5->chr2:124782864-125672864:+,contactin_associated_protein-like_5	NCIH2227_LUNG	0.8	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	WDR62--CLC	2	2	WDR62	3519	chr19:36550932:+	CLC	37389	chr19:40222145:-	ONLY_REF_SPLICE	YES	98	32	0.04	0.11	0.0248	0.0248	WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+,CLC->Charcot-Leyden_crystal_galectin,chr19:40221890-40228668:-	NCIH2227_LUNG	0.04	0.11	0.0496	TRUE	0	0	0	1	0	FALSE	ACH-000610
NCIH2227_LUNG	CTD-2251F13.1--PRKD1	2	1	CTD-2251F13.1	6082	chr14:30449355:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	1	12	0.75	0.2	0.0248	0.0124	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH2227_LUNG	0.2	0.75	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	CTD-2251F13.1--PRKD1	2	1	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0.0124	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH2227_LUNG	1	1	0.0372	TRUE	0	3	0	9	3	TRUE	ACH-000610
NCIH2227_LUNG	WDR62--CLC	1	5	WDR62	2360	chr19:36549773:+	CLC	36178	chr19:40225133:-	ONLY_REF_SPLICE	YES	82	28	0.07	0.18	0.0124	0.0621	WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+,CLC->Charcot-Leyden_crystal_galectin,chr19:40221890-40228668:-	NCIH2227_LUNG	0.07	0.18	0.0745	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	34380	chr14:30066964:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NCIH2227_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	GDAP1--RP11-758M4.1	2	0	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH2227_LUNG	1	1	0.0248	TRUE	7	28	0	43	0	FALSE	ACH-000610
NCIH2227_LUNG	MAPT--GJC1	2	0	MAPT	1305	chr17:43972052:+	GJC1	37725	chr17:42884837:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	MAPT->chr17:43971748-44105700:+,microtubule_associated_protein_tau,GJC1->chr17:42875816-42908184:-,gap_junction_protein_gamma_1	NCIH2227_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	NIN--TNNT1	2	0	NIN	7017	chr14:51259430:-	TNNT1	48605	chr19:55658075:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NIN->Oncogene{Bushman},chr14:51186481-51297839:-,ninein,TNNT1->chr19:55644162-55660722:-,troponin_T1,_slow_skeletal_type	NCIH2227_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	NKTR--CDKN2C	2	0	NKTR	15451	chr3:42674315:+	CDKN2C	35965	chr1:51439565:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NKTR->chr3:42642106-42690227:+,natural_killer_cell_triggering_receptor,CDKN2C->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:51426417-51440305:+,cyclin-dependent_kinase_inhibitor_2C	NCIH2227_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	RBFOX2--RANGAP1	2	0	RBFOX2	1186	chr22:36424288:-	RANGAP1	35395	chr22:41677086:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	RBFOX2->RNA_binding_protein,_fox-1_homolog_2,chr22:36134783-36424473:-,RANGAP1->Ran_GTPase_activating_protein_1,chr22:41641615-41682255:-	NCIH2227_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	RP11-304L19.5--ABCA3	2	0	RP11-304L19.5	1216	chr16:2205144:-	ABCA3	22983	chr16:2339621:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	RP11-304L19.5->chr16:2204798-2205359:-,ABCA3->ATP_binding_cassette_subfamily_A_member_3,Oncogene{Bushman},chr16:2325882-2390747:-	NCIH2227_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	WDR33--LEMD2	2	0	WDR33	7687	chr2:128520636:-	LEMD2	35818	chr6:33754551:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,LEMD2->LEM_domain_containing_2,chr6:33738979-33756913:-	NCIH2227_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	ZNF519--GABRA3	2	0	ZNF519	2343	chr18:14124349:-	GABRA3	24901	chrX:151533068:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,GABRA3->chrX:151334706-151619830:-,gamma-aminobutyric_acid_type_A_receptor_alpha3_subunit	NCIH2227_LUNG	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000610
NCIH2227_LUNG	LSM4--GNAS	1	1	LSM4	5564	chr19:18420488:-	GNAS	27114	chr20:57470667:+	ONLY_REF_SPLICE	YES	703	1173	0	0	0.0124	0.0124	LSM4->LSM4_homolog,_U6_small_nuclear_RNA_and_mRNA_degradation_associated,chr19:18417040-18434084:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH2227_LUNG	0	0	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000610
NCIH2227_LUNG	POLE--NAV3	1	1	POLE	34450	chr12:133208901:-	NAV3	72200	chr12:78552983:+	ONLY_REF_SPLICE	YES	118	25	0.02	0.07	0.0124	0.0124	POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH2227_LUNG	0.02	0.07	0.0248	TRUE	0	0	0	1	0	FALSE	ACH-000610
NCIH2227_LUNG	RBM6--ANKMY1	1	1	RBM6	18777	chr3:50098980:+	ANKMY1	39665	chr2:241494472:-	ONLY_REF_SPLICE	YES	114	12	0.02	0.14	0.0124	0.0124	RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,ANKMY1->ankyrin_repeat_and_MYND_domain_containing_1,chr2:241418839-241508626:-	NCIH2227_LUNG	0.02	0.14	0.0248	TRUE	0	0	0	1	0	FALSE	ACH-000610
NCIH2227_LUNG	RP11-268G12.1--GNAS	1	1	RP11-268G12.1	1247	chrX:27416868:-	GNAS	29756	chr20:57470667:+	ONLY_REF_SPLICE	NO	7	1173	0.22	0	0.0124	0.0124	RP11-268G12.1->chrX:27193037-27417114:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH2227_LUNG	0	0.22	0.0248	FALSE	0	1	0	1	0	FALSE	ACH-000610
NCIH2227_LUNG	SMG7--LAMC1	1	1	SMG7	1434	chr1:183441784:+	LAMC1	37376	chr1:183072463:+	ONLY_REF_SPLICE	YES	129	59	0.02	0.03	0.0124	0.0124	SMG7->SMG7_nonsense_mediated_mRNA_decay_factor,chr1:183441351-183567381:+,LAMC1->chr1:182992595-183114727:+,laminin_subunit_gamma_1	NCIH2227_LUNG	0.02	0.03	0.0248	TRUE	0	0	0	1	0	FALSE	ACH-000610
NCIH2227_LUNG	SNX13--TSPAN13	1	1	SNX13	1218	chr7:17979907:-	TSPAN13	46946	chr7:16815836:+	ONLY_REF_SPLICE	YES	17	252	0.11	0.01	0.0124	0.0124	SNX13->chr7:17830385-17980124:-,sorting_nexin_13,TSPAN13->chr7:16793160-16824161:+,tetraspanin_13	NCIH2227_LUNG	0.01	0.11	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000610
NCIH2227_LUNG	XPR1--ACBD6	1	1	XPR1	1267	chr1:180601406:+	ACBD6	30459	chr1:180399397:-	ONLY_REF_SPLICE	NO	502	167	0	0.01	0.0124	0.0124	GTEx_FI:{Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6],Brain=[count:1=pct:0.2]},GTEx_v2:{count=6;pct=0.07%;dist=Testis=2,Lung=1,Whole_Blood=1,Heart_-_Atrial_Appendage=1,Brain_-_Cortex=1},XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-	NCIH2227_LUNG	0	0.01	0.0248	FALSE	0	1	0	1	1	FALSE	ACH-000610
HEC1B_ENDOMETRIUM	TIMM23B--LINC00843	131	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.3043	0.2887	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HEC1B_ENDOMETRIUM	0.99	1	1.593	TRUE	508	994	45	981	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	SDHB--PREX2	100	0	SDHB	1223	chr1:17380443:-	PREX2	54929	chr8:69103957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.9956	0	SDHB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:17345217-17380665:-,succinate_dehydrogenase_complex_iron_sulfur_subunit_B,PREX2->ArcherDX_panel,FoundationOne_panel,chr8:68864353-69149265:+,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_2	HEC1B_ENDOMETRIUM	1	1	0.9956	TRUE	0	0	0	1	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	TIMM23--RP11-464F9.1	88	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	168	5	0.35	0.95	0.8762	0.0299	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HEC1B_ENDOMETRIUM	0.35	0.95	0.9061	TRUE	519	3926	326	965	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-TA--MT-TC	83	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8264	0.0996	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC1B_ENDOMETRIUM	1	1	0.926	FALSE	462	80	0	856	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND6--MT-TE	64	8	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6372	0.0797	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1B_ENDOMETRIUM	1	1	0.7169	FALSE	499	1288	110	792	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	TICAM1--PLIN3	56	14	TICAM1	1091	chr19:4831626:-	PLIN3	7727	chr19:4867730:-	INCL_NON_REF_SPLICE	YES	5	0	0.93	1	0.5576	0.1394	LOCAL_REARRANGEMENT:-:[6637],TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1,PLIN3->chr19:4838353-4867780:-,perilipin_3	HEC1B_ENDOMETRIUM	0.93	1	0.697	TRUE	0	0	0	2	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	MT-TA--MT-TC	47	9	MT-TA	1053	chrM:5603:-	MT-TC	4081	chrM:5815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4679	0.0896	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC1B_ENDOMETRIUM	1	1	0.5575	FALSE	462	80	0	856	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	PREX2--SDHB	41	13	PREX2	1418	chr8:68864770:+	SDHB	58353	chr1:17371383:-	ONLY_REF_SPLICE	YES	2	22	0.96	0.71	0.4082	0.1294	PREX2->ArcherDX_panel,FoundationOne_panel,chr8:68864353-69149265:+,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_2,SDHB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:17345217-17380665:-,succinate_dehydrogenase_complex_iron_sulfur_subunit_B	HEC1B_ENDOMETRIUM	0.71	0.96	0.5376	TRUE	0	0	0	1	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	DENND1A--STRBP	36	15	DENND1A	2335	chr9:126641230:-	STRBP	47800	chr9:125946577:-	ONLY_REF_SPLICE	YES	25	29	0.67	0.64	0.3584	0.1493	DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,STRBP->chr9:125871779-126030855:-,spermatid_perinuclear_RNA_binding_protein	HEC1B_ENDOMETRIUM	0.64	0.67	0.5077	TRUE	0	0	0	1	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	MT-TA--MT-TN	33	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3286	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC1B_ENDOMETRIUM	1	1	0.3286	FALSE	369	2501	205	193	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-TA--MT-TN	25	30	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2489	0.2987	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC1B_ENDOMETRIUM	1	1	0.5476	FALSE	369	2501	205	193	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND3--MT-ATP8	31	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3086	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC1B_ENDOMETRIUM	1	1	0.3086	FALSE	351	233	23	137	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND6--MT-TE	29	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2887	0.0797	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1B_ENDOMETRIUM	1	1	0.3684	FALSE	499	1288	110	792	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-TA--MT-TN	8	89	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0797	0.8861	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC1B_ENDOMETRIUM	1	1	0.9658	FALSE	369	2501	205	193	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND6--MT-TE	23	22	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.229	0.219	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1B_ENDOMETRIUM	0.92	1	0.448	FALSE	499	1288	110	792	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	REV1--AFF3	23	9	REV1	3576	chr2:100078958:-	AFF3	59528	chr2:100185377:-	ONLY_REF_SPLICE	YES	32	1	0.5	0.97	0.229	0.0896	LOCAL_REARRANGEMENT:-:[55826],REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-,AFF3->AF4/FMR2_family_member_3,Oncogene{Bushman},chr2:100162323-100759201:-	HEC1B_ENDOMETRIUM	0.5	0.97	0.3186	TRUE	0	0	0	1	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	MT-TA--MT-TN	4	84	MT-TA	1054	chrM:5602:-	MT-TN	4073	chrM:5726:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0.8363	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC1B_ENDOMETRIUM	1	1	0.8761	FALSE	369	2501	205	193	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-TA--MT-TN	12	49	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1195	0.4879	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC1B_ENDOMETRIUM	1	1	0.6074	FALSE	369	2501	205	193	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	AL589743.1--RP11-536C10.17	23	2	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.229	0.0199	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	HEC1B_ENDOMETRIUM	0.86	1	0.2489	TRUE	0	33	0	45	33	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	AP000525.9--LA16c-60G3.6	23	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.229	0.0199	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HEC1B_ENDOMETRIUM	0.89	1	0.2489	TRUE	0	42	0	133	42	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MAP3K1--NDUFAF2	20	6	MAP3K1	18803	chr5:56184184:+	NDUFAF2	27891	chr5:60368952:+	ONLY_REF_SPLICE	YES	18	125	0.59	0.17	0.1991	0.0597	{Klijn_CCL:Uterus=1},MAP3K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:56111401-56191979:+,mitogen-activated_protein_kinase_kinase_kinase_1,NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+	HEC1B_ENDOMETRIUM	0.17	0.59	0.2588	TRUE	0	0	0	2	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	TICAM1--PLIN3	18	8	TICAM1	1091	chr19:4831626:-	PLIN3	9813	chr19:4861423:-	ONLY_REF_SPLICE	YES	5	7	0.84	0.79	0.1792	0.0797	LOCAL_REARRANGEMENT:-:[6637],TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1,PLIN3->chr19:4838353-4867780:-,perilipin_3	HEC1B_ENDOMETRIUM	0.79	0.84	0.2589	TRUE	0	0	0	2	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	RP11-123O10.4--GRIP1	19	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1892	0.0299	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HEC1B_ENDOMETRIUM	1	1	0.2191	FALSE	416	2512	207	587	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND6--MT-TE	9	36	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.0896	0.3584	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1B_ENDOMETRIUM	0.94	1	0.448	FALSE	499	1288	110	792	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	PLXDC1--TAF13	18	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1792	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HEC1B_ENDOMETRIUM	1	1	0.1792	TRUE	7	10	0	216	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	17	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	3	1	0.88	0.1693	0.0398	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC1B_ENDOMETRIUM	0.88	1	0.2091	FALSE	515	4851	409	746	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-TA--MT-TN	6	35	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0597	0.3485	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC1B_ENDOMETRIUM	1	1	0.4082	FALSE	369	2501	205	193	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND6--MT-TE	8	26	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0797	0.2589	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1B_ENDOMETRIUM	1	1	0.3386	FALSE	499	1288	110	792	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-TA--MT-TN	14	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1394	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC1B_ENDOMETRIUM	1	1	0.1394	FALSE	369	2501	205	193	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	APP--MT-ND2	11	5	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	2253	578	0.01	0.03	0.1095	0.0498	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HEC1B_ENDOMETRIUM	0.01	0.03	0.1593	FALSE	0	1	0	51	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND6--MT-TE	3	37	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.0299	0.3684	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1B_ENDOMETRIUM	0.91	1	0.3983	FALSE	499	1288	110	792	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	NRIP1--AF127936.7	12	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1195	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC1B_ENDOMETRIUM	1	1	0.1195	FALSE	292	1546	117	613	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	GAN--CMIP	10	2	GAN	1329	chr16:81348885:+	CMIP	53749	chr16:81736227:+	ONLY_REF_SPLICE	YES	1	37	0.92	0.24	0.0996	0.0199	NEIGHBORS[54286],GAN->chr16:81348557-81424489:+,gigaxonin,CMIP->c-Maf_inducing_protein,chr16:81478775-81745367:+	HEC1B_ENDOMETRIUM	0.24	0.92	0.1195	FALSE	0	0	0	1	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-TA--MT-TN	10	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0996	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC1B_ENDOMETRIUM	1	1	0.0996	FALSE	369	2501	205	193	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	C15orf57--CBX3	8	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	35	51	0.29	0.22	0.0797	0.0597	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEC1B_ENDOMETRIUM	0.22	0.29	0.1394	TRUE	267	562	48	632	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND6--MT-TE	3	25	MT-ND6	1096	chrM:14578:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0.2489	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1B_ENDOMETRIUM	1	1	0.2788	FALSE	499	1288	110	792	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	8	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0797	0.0498	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC1B_ENDOMETRIUM	1	1	0.1295	FALSE	407	2205	196	549	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND6--MT-TE	3	21	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0.2091	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1B_ENDOMETRIUM	1	1	0.239	FALSE	499	1288	110	792	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND6--MT-TE	8	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0797	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1B_ENDOMETRIUM	1	1	0.0797	FALSE	499	1288	110	792	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	FARP2--GAL3ST2	7	2	FARP2	13097	chr2:242357524:+	GAL3ST2	46907	chr2:242738480:+	ONLY_REF_SPLICE	YES	9	0	0.5	1	0.0697	0.0199	FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+,GAL3ST2->chr2:242716240-242743623:+,galactose-3-O-sulfotransferase_2	HEC1B_ENDOMETRIUM	0.5	1	0.0896	TRUE	0	0	0	1	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND3--MT-ATP8	7	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0697	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC1B_ENDOMETRIUM	1	1	0.0697	FALSE	351	233	23	137	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	APP--MT-ND2	5	5	APP	11652	chr21:27394197:-	MT-ND2	33030	chrM:5324:+	INCL_NON_REF_SPLICE	YES	2534	530	0	0.02	0.0498	0.0498	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HEC1B_ENDOMETRIUM	0	0.02	0.0996	FALSE	0	1	0	51	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	C15orf57--CBX3	5	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	35	52	0.22	0.16	0.0498	0.0498	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEC1B_ENDOMETRIUM	0.16	0.22	0.0996	TRUE	267	562	48	632	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0597	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC1B_ENDOMETRIUM	1	1	0.0597	FALSE	369	2501	205	193	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	FTH1--ACTB	5	3	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	6982	3	0	0.73	0.0498	0.0299	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HEC1B_ENDOMETRIUM	0	0.73	0.0797	FALSE	1	0	0	97	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	RP11-634B7.4--TRIM58	5	2	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0.0199	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	HEC1B_ENDOMETRIUM	1	1	0.0697	TRUE	158	633	76	73	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	APP--MT-ND2	5	1	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	2203	1261	0	0	0.0498	0.01	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HEC1B_ENDOMETRIUM	0	0	0.0598	FALSE	0	1	0	51	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0498	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC1B_ENDOMETRIUM	1	1	0.0498	FALSE	462	80	0	856	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	LINC01036--LINC01037	4	2	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0398	0.0199	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HEC1B_ENDOMETRIUM	0.86	1	0.0597	FALSE	0	24	0	62	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	SAMD5--SASH1	4	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	1	13	0.83	0.28	0.0398	0.01	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HEC1B_ENDOMETRIUM	0.28	0.83	0.0498	TRUE	53	396	64	110	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	AL589743.1--RP11-536C10.17	3	4	AL589743.1	9393	chr14:19680685:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	173	0	0.04	1	0.0299	0.0398	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	HEC1B_ENDOMETRIUM	0.04	1	0.0697	TRUE	0	8	0	6	8	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	AP000525.9--LA16c-60G3.6	3	4	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	60	0	0.1	1	0.0299	0.0398	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HEC1B_ENDOMETRIUM	0.1	1	0.0697	TRUE	0	8	0	10	8	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	DNAJC25--UGCG	4	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0398	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	HEC1B_ENDOMETRIUM	1	1	0.0398	TRUE	50	73	10	50	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND3--MT-ATP8	4	0	MT-ND3	1053	chrM:10111:+	MT-ATP8	4482	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC1B_ENDOMETRIUM	1	1	0.0398	FALSE	351	233	23	137	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1B_ENDOMETRIUM	1	1	0.0398	FALSE	499	1288	110	792	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1B_ENDOMETRIUM	1	1	0.0398	FALSE	499	1288	110	792	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-TA--MT-TN	4	0	MT-TA	1033	chrM:5623:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0398	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC1B_ENDOMETRIUM	1	1	0.0398	FALSE	369	2501	205	193	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	RP11-123O10.4--GRIP1	4	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0398	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HEC1B_ENDOMETRIUM	1	1	0.0398	FALSE	93	270	15	244	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	FTH1--ACTB	3	3	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	6983	4	0	0.6	0.0299	0.0299	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HEC1B_ENDOMETRIUM	0	0.6	0.0598	FALSE	1	0	0	97	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	CHSY3--HSPA8P4	3	2	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	21	0	0.19	1	0.0299	0.0199	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	HEC1B_ENDOMETRIUM	0.19	1	0.0498	FALSE	89	26	1	44	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	FTH1--ACTB	3	2	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	7165	3	0	0.62	0.0299	0.0199	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HEC1B_ENDOMETRIUM	0	0.62	0.0498	FALSE	1	0	0	97	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	LINC01036--LINC01037	3	2	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0.0199	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HEC1B_ENDOMETRIUM	1	1	0.0498	FALSE	0	26	0	50	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	NRIP1--AF127936.7	3	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0299	0.01	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC1B_ENDOMETRIUM	0.18	1	0.0399	FALSE	125	705	46	456	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MAP3K1--NDUFAF2	3	0	MAP3K1	18803	chr5:56184184:+	NDUFAF2	30068	chr5:60394819:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	{Klijn_CCL:Uterus=1},MAP3K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:56111401-56191979:+,mitogen-activated_protein_kinase_kinase_kinase_1,NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+	HEC1B_ENDOMETRIUM	1	1	0.0299	TRUE	0	0	0	2	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND3--MT-ATP8	3	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC1B_ENDOMETRIUM	1	1	0.0299	FALSE	351	233	23	137	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND3--MT-ATP8	3	0	MT-ND3	1236	chrM:10294:+	MT-ATP8	4437	chrM:8456:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC1B_ENDOMETRIUM	1	1	0.0299	FALSE	351	233	23	137	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1B_ENDOMETRIUM	1	1	0.0299	FALSE	499	1288	110	792	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1B_ENDOMETRIUM	1	1	0.0299	FALSE	499	1288	110	792	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	MT-TA--MT-TN	3	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0299	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC1B_ENDOMETRIUM	1	1	0.0299	FALSE	369	2501	205	193	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	TRAK2--ALS2CR11	3	0	TRAK2	1230	chr2:202316073:-	ALS2CR11	42812	chr2:202360692:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0299	0	LOCAL_REARRANGEMENT:-:[35846],TRAK2->chr2:202241930-202316302:-,trafficking_protein,_kinesin_binding_2,ALS2CR11->amyotrophic_lateral_sclerosis_2_chromosome_region_candidate_11,chr2:202352148-202483901:-	HEC1B_ENDOMETRIUM	1	1	0.0299	TRUE	0	0	0	1	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	NRIP1--AF127936.7	2	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	25	0	0.17	1	0.0199	0.0299	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC1B_ENDOMETRIUM	0.17	1	0.0498	FALSE	164	806	69	479	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.86	1	0.01	0.0498	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC1B_ENDOMETRIUM	0.86	1	0.0598	FALSE	192	492	57	212	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	3	0.83	0.62	0.01	0.0398	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC1B_ENDOMETRIUM	0.62	0.83	0.0498	FALSE	467	2173	244	435	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	SRSF12--PNRC1	2	0	SRSF12	1259	chr6:89827542:-	PNRC1	14374	chr6:89793472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},LOCAL_INVERSION:-:+:[10799],SRSF12->chr6:89805678-89827800:-,serine/arginine-rich_splicing_factor_12,PNRC1->chr6:89790470-89794879:+,proline_rich_nuclear_receptor_coactivator_1	HEC1B_ENDOMETRIUM	1	1	0.0199	TRUE	1	0	0	1	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	TEX9--RPS27A	2	0	TEX9	11289	chr15:56687032:+	RPS27A	23272	chr2:55459944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	TEX9->chr15:56536207-56738195:+,testis_expressed_9,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	HEC1B_ENDOMETRIUM	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	PICALM--SYTL2	1	1	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	NO	168	2	0.01	0.5	0.01	0.01	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	HEC1B_ENDOMETRIUM	0.01	0.5	0.02	FALSE	4	2	0	20	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	RP11-1L12.3--SLC5A12	1	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.01	0.01	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	HEC1B_ENDOMETRIUM	1	1	0.02	TRUE	3	101	0	60	0	FALSE	ACH-000941
HEC1B_ENDOMETRIUM	RP11-368L12.1--RP11-96H17.1	1	1	RP11-368L12.1	3549	chr16:63565129:-	RP11-96H17.1	10295	chr16:63153269:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.01	0.01	GTEx_FI:{Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4]},RP11-368L12.1->chr16:63348168-63651950:-,RP11-96H17.1->chr16:63090690-63163558:-	HEC1B_ENDOMETRIUM	1	1	0.02	TRUE	0	1	0	1	1	TRUE	ACH-000941
HEC1B_ENDOMETRIUM	TULP4--RP11-732M18.3	1	1	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	13	1	0.13	0.67	0.01	0.01	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	HEC1B_ENDOMETRIUM	0.13	0.67	0.02	TRUE	126	140	6	21	0	FALSE	ACH-000941
SKRC20_KIDNEY	TIMM23B--LINC00843	69	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.97	0.7044	0.3369	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKRC20_KIDNEY	0.97	1	1.0413	TRUE	508	994	45	981	0	FALSE	ACH-000385
SKRC20_KIDNEY	AFAP1--NAA15	60	48	AFAP1	8559	chr4:7840251:-	NAA15	35043	chr4:140255328:+	ONLY_REF_SPLICE	YES	30	109	0.78	0.5	0.6126	0.49	AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,NAA15->N(alpha)-acetyltransferase_15,_NatA_auxiliary_subunit,chr4:140222609-140341187:+	SKRC20_KIDNEY	0.5	0.78	1.1026	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	KANSL1--ARL17B	34	29	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	38	118	0.62	0.35	0.3471	0.2961	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SKRC20_KIDNEY	0.35	0.62	0.6432	TRUE	181	1564	124	196	0	FALSE	ACH-000385
SKRC20_KIDNEY	TIMM23--RP11-464F9.1	38	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	345	4	0.11	0.91	0.3879	0.051	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKRC20_KIDNEY	0.11	0.91	0.4389	TRUE	519	3926	326	965	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-TA--MT-TC	33	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3369	0.0204	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKRC20_KIDNEY	1	1	0.3573	FALSE	462	80	0	856	0	FALSE	ACH-000385
SKRC20_KIDNEY	VAMP5--VAMP8	33	0	VAMP5	1086	chr2:85811616:+	VAMP8	10928	chr2:85808699:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3369	0	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[2377],VAMP5->chr2:85811531-85820535:+,vesicle_associated_membrane_protein_5,VAMP8->Oncogene{Bushman},chr2:85788685-85809154:+,vesicle_associated_membrane_protein_8	SKRC20_KIDNEY	1	1	0.3369	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	MT-ND4--MT-ND4L	3	119	MT-ND4	1724	chrM:11483:+	MT-ND4L	5482	chrM:10573:+	INCL_NON_REF_SPLICE	YES	7960	0	0.02	1	0.0306	1.2149	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKRC20_KIDNEY	0.02	1	1.2455	FALSE	344	827	44	306	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND4--MT-ND4L	3	119	MT-ND4	1489	chrM:11248:+	MT-ND4L	5385	chrM:10476:+	INCL_NON_REF_SPLICE	YES	1758	0	0.06	1	0.0306	1.2149	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKRC20_KIDNEY	0.06	1	1.2455	FALSE	344	827	44	306	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND4--MT-ND4L	4	114	MT-ND4	1250	chrM:11009:+	MT-ND4L	5458	chrM:10549:+	INCL_NON_REF_SPLICE	YES	162	0	0.42	1	0.0408	1.1638	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKRC20_KIDNEY	0.42	1	1.2046	FALSE	344	827	44	306	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND4--MT-ND4L	4	114	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	109	0	0.52	1	0.0408	1.1638	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKRC20_KIDNEY	0.52	1	1.2046	FALSE	344	827	44	306	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND4--MT-ND4L	3	115	MT-ND4	1299	chrM:11058:+	MT-ND4L	5462	chrM:10553:+	INCL_NON_REF_SPLICE	YES	291	0	0.29	1	0.0306	1.1741	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKRC20_KIDNEY	0.29	1	1.2047	FALSE	344	827	44	306	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND4--MT-ND4L	3	114	MT-ND4	1192	chrM:10951:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	NO	85	0	0.58	1	0.0306	1.1638	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKRC20_KIDNEY	0.58	1	1.1944	FALSE	344	826	44	306	0	FALSE	ACH-000385
SKRC20_KIDNEY	ZNF654--HMGB2	31	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3165	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKRC20_KIDNEY	1	1	0.3165	TRUE	0	0	0	518	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND4--MT-ND4L	8	80	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	11266	0	0.01	1	0.0817	0.8167	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKRC20_KIDNEY	0.01	1	0.8984	FALSE	344	827	44	306	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND4--MT-ND4L	3	95	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	12	0	0.89	1	0.0306	0.9699	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKRC20_KIDNEY	0.89	1	1.0005	FALSE	344	826	44	306	0	FALSE	ACH-000385
SKRC20_KIDNEY	PEAK1--HMG20A	24	0	PEAK1	1139	chr15:77712348:-	HMG20A	34602	chr15:77750746:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.245	0	LOCAL_INVERSION:-:+:[268],PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1,HMG20A->chr15:77712754-77777949:+,high_mobility_group_20A	SKRC20_KIDNEY	1	1	0.245	TRUE	0	1	0	1	1	TRUE	ACH-000385
SKRC20_KIDNEY	MT-ND4--MT-ND4L	4	76	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	12	2	0.87	0.98	0.0408	0.7759	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKRC20_KIDNEY	0.87	0.98	0.8167	FALSE	344	821	44	306	0	FALSE	ACH-000385
SKRC20_KIDNEY	C15orf57--CBX3	16	25	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	44	34	0.48	0.55	0.1633	0.2552	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKRC20_KIDNEY	0.48	0.55	0.4185	TRUE	267	562	48	632	0	FALSE	ACH-000385
SKRC20_KIDNEY	RP11-123O10.4--GRIP1	20	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2042	0.0408	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKRC20_KIDNEY	1	1	0.245	FALSE	416	2512	207	587	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND6--MT-TE	18	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1838	0.0102	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKRC20_KIDNEY	1	1	0.194	FALSE	499	1288	110	792	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND4--MT-ND4L	10	14	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1599	0	0.01	1	0.1021	0.1429	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKRC20_KIDNEY	0.01	1	0.245	FALSE	344	827	44	306	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND6--MT-TE	11	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1123	0.0102	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKRC20_KIDNEY	1	1	0.1225	FALSE	499	1288	110	792	0	FALSE	ACH-000385
SKRC20_KIDNEY	NIPA2--POLA1	11	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1123	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SKRC20_KIDNEY	1	1	0.1123	TRUE	46	1352	75	139	0	FALSE	ACH-000385
SKRC20_KIDNEY	CHSY3--HSPA8P4	9	6	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	28	0	0.35	1	0.0919	0.0613	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	SKRC20_KIDNEY	0.35	1	0.1532	FALSE	89	26	1	44	0	FALSE	ACH-000385
SKRC20_KIDNEY	MRPS35--RP11-1060J15.7	9	5	MRPS35	3392	chr12:27869391:+	RP11-1060J15.7	15103	chr12:27860993:+	ONLY_REF_SPLICE	YES	419	0	0.03	1	0.0919	0.051	LOCAL_REARRANGEMENT:+:[2410],MRPS35->chr12:27863706-27909228:+,mitochondrial_ribosomal_protein_S35,RP11-1060J15.7->chr12:27857501-27861296:+	SKRC20_KIDNEY	0.03	1	0.1429	TRUE	0	0	0	1	0	FALSE	ACH-000385
SKRC20_KIDNEY	RP11-96H19.1--RP11-446N19.1	6	16	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	6	1	0.79	0.96	0.0613	0.1633	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKRC20_KIDNEY	0.79	0.96	0.2246	FALSE	515	4851	409	746	0	FALSE	ACH-000385
SKRC20_KIDNEY	RP11-680G10.1--GSE1	7	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	11	1	0.52	0.0715	0.051	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKRC20_KIDNEY	0.52	1	0.1225	TRUE	465	1949	224	605	0	FALSE	ACH-000385
SKRC20_KIDNEY	RP11-96H19.1--RP11-446N19.1	4	17	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	6	0	0.78	1	0.0408	0.1736	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKRC20_KIDNEY	0.78	1	0.2144	FALSE	407	2205	196	549	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND4--MT-ND4L	4	14	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	109	0	0.14	1	0.0408	0.1429	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKRC20_KIDNEY	0.14	1	0.1837	FALSE	344	826	44	306	0	FALSE	ACH-000385
SKRC20_KIDNEY	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKRC20_KIDNEY	1	1	0.0715	FALSE	13	9	0	364	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND6--MT-TE	4	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0408	0.1123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKRC20_KIDNEY	0.94	1	0.1531	FALSE	499	1288	110	792	0	FALSE	ACH-000385
SKRC20_KIDNEY	RP11-96H19.1--RP11-446N19.1	2	19	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.95	1	0.0204	0.194	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKRC20_KIDNEY	0.95	1	0.2144	FALSE	192	492	57	212	0	FALSE	ACH-000385
SKRC20_KIDNEY	C15orf57--CBX3	3	14	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	43	34	0.28	0.33	0.0306	0.1429	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKRC20_KIDNEY	0.28	0.33	0.1735	TRUE	267	562	48	632	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND4--MT-ND4L	3	14	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	14181	0	0	1	0.0306	0.1429	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKRC20_KIDNEY	0	1	0.1735	FALSE	344	827	44	306	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-TA--MT-TC	6	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0613	0.0204	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKRC20_KIDNEY	1	1	0.0817	FALSE	462	80	0	856	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-TA--MT-TC	5	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.051	0.0306	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKRC20_KIDNEY	1	1	0.0816	FALSE	462	80	0	856	0	FALSE	ACH-000385
SKRC20_KIDNEY	RP11-680G10.1--GSE1	4	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.65	0.0408	0.0715	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKRC20_KIDNEY	0.65	1	0.1123	TRUE	458	1351	185	561	0	FALSE	ACH-000385
SKRC20_KIDNEY	RP11-96H19.1--RP11-446N19.1	1	18	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.95	0.95	0.0102	0.1838	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKRC20_KIDNEY	0.95	0.95	0.194	FALSE	467	2173	244	435	0	FALSE	ACH-000385
SKRC20_KIDNEY	AFAP1--NAA15	1	17	AFAP1	7379	chr4:7844866:-	NAA15	35043	chr4:140255328:+	ONLY_REF_SPLICE	YES	66	109	0.21	0.14	0.0102	0.1736	AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,NAA15->N(alpha)-acetyltransferase_15,_NatA_auxiliary_subunit,chr4:140222609-140341187:+	SKRC20_KIDNEY	0.14	0.21	0.1838	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	MT-ND1--MT-RNR2	5	1	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	78	0	0.07	1	0.051	0.0102	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKRC20_KIDNEY	0.07	1	0.0612	FALSE	114	26	4	85	0	FALSE	ACH-000385
SKRC20_KIDNEY	SCARB1--UBC	5	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	207	227	0.03	0.03	0.051	0.0102	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SKRC20_KIDNEY	0.03	0.03	0.0612	TRUE	55	66	6	101	0	FALSE	ACH-000385
SKRC20_KIDNEY	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.051	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKRC20_KIDNEY	1	1	0.051	FALSE	13	9	0	364	0	FALSE	ACH-000385
SKRC20_KIDNEY	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.051	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKRC20_KIDNEY	1	1	0.051	FALSE	292	1546	117	613	0	FALSE	ACH-000385
SKRC20_KIDNEY	HMG20A--PEAK1	4	3	HMG20A	1593	chr15:77713346:+	PEAK1	20568	chr15:77657567:-	ONLY_REF_SPLICE	YES	16	1	0.3	0.88	0.0408	0.0306	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[268],HMG20A->chr15:77712754-77777949:+,high_mobility_group_20A,PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1	SKRC20_KIDNEY	0.3	0.88	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	MT-TA--MT-TC	4	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0.0306	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKRC20_KIDNEY	1	1	0.0714	FALSE	462	80	0	856	0	FALSE	ACH-000385
SKRC20_KIDNEY	RORA--ANXA2	4	3	RORA	1267	chr15:61521252:-	ANXA2	59082	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	6865	1	0	0.0408	0.0306	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	SKRC20_KIDNEY	0	1	0.0714	FALSE	0	1	0	4	0	FALSE	ACH-000385
SKRC20_KIDNEY	HLA-A--MT-CO3	4	2	HLA-A	3879	chr6:29911915:+	MT-CO3	8626	chrM:9207:+	INCL_NON_REF_SPLICE	YES	8129	0	0	1	0.0408	0.0204	HLA-A->chr6:29909037-29913661:+,major_histocompatibility_complex,_class_I,_A,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SKRC20_KIDNEY	0	1	0.0612	FALSE	0	14	0	1	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND1--MT-RNR2	3	5	MT-ND1	1435	chrM:3741:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	93	0	0.08	1	0.0306	0.051	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKRC20_KIDNEY	0.08	1	0.0816	FALSE	114	26	4	85	0	FALSE	ACH-000385
SKRC20_KIDNEY	FTH1--ACTB	4	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SKRC20_KIDNEY	1	1	0.0408	TRUE	1	0	0	97	0	FALSE	ACH-000385
SKRC20_KIDNEY	RP11-275N1.1--NEBL	4	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	SKRC20_KIDNEY	1	1	0.0408	TRUE	0	0	0	21	0	FALSE	ACH-000385
SKRC20_KIDNEY	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1068	chr6:30691587:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SKRC20_KIDNEY	1	1	0.0408	TRUE	0	1	0	48	1	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND1--MT-RNR2	3	3	MT-ND1	1297	chrM:3603:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	90	0	0.06	1	0.0306	0.0306	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKRC20_KIDNEY	0.06	1	0.0612	FALSE	114	26	4	85	0	FALSE	ACH-000385
SKRC20_KIDNEY	ITPR1--PRICKLE2-AS3	3	1	ITPR1	49642	chr3:4777038:+	PRICKLE2-AS3	77140	chr3:64175970:+	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.0306	0.0102	ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1,PRICKLE2-AS3->PRICKLE2_antisense_RNA_3,chr3:64173220-64186641:+	SKRC20_KIDNEY	0.2	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	RP11-120D5.1--MID1	3	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	118	0.4	0.03	0.0306	0.0102	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKRC20_KIDNEY	0.03	0.4	0.0408	FALSE	16	356	14	466	0	FALSE	ACH-000385
SKRC20_KIDNEY	RP11-319G9.5--WWOX	3	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	18	1	0.18	0.0306	0.0102	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	SKRC20_KIDNEY	0.18	1	0.0408	FALSE	154	425	28	76	0	FALSE	ACH-000385
SKRC20_KIDNEY	ATP6V0C--MT-CO2	3	0	ATP6V0C	2886	chr16:2569357:+	MT-CO2	6967	chrM:7804:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	ATP6V0C->ATPase_H+_transporting_V0_subunit_c,chr16:2563871-2570219:+,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKRC20_KIDNEY	1	1	0.0306	FALSE	0	0	0	9	0	FALSE	ACH-000385
SKRC20_KIDNEY	CTSD--ACTG1	3	0	CTSD	4382	chr11:1780784:-	ACTG1	17252	chr17:79477746:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.03%,CTSD->cathepsin_D,chr11:1773982-1785222:-,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SKRC20_KIDNEY	1	1	0.0306	TRUE	0	0	0	2	0	TRUE	ACH-000385
SKRC20_KIDNEY	KMT2C--WDR86-AS1	3	0	KMT2C	1380	chr7:152132711:-	WDR86-AS1	78222	chr7:151109805:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,WDR86-AS1->WDR86_antisense_RNA_1,chr7:151106247-151110440:+	SKRC20_KIDNEY	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	LINC01036--LINC01037	3	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SKRC20_KIDNEY	1	1	0.0306	FALSE	0	26	0	50	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND4--MT-ND4L	3	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKRC20_KIDNEY	1	1	0.0306	FALSE	344	821	44	306	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND4--MT-ND4L	3	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKRC20_KIDNEY	1	1	0.0306	FALSE	344	821	44	306	0	FALSE	ACH-000385
SKRC20_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKRC20_KIDNEY	1	1	0.0306	FALSE	499	1288	110	792	0	FALSE	ACH-000385
SKRC20_KIDNEY	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKRC20_KIDNEY	1	1	0.0306	TRUE	0	0	0	434	0	FALSE	ACH-000385
SKRC20_KIDNEY	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1179	chr6:30691476:-	TUBBP2	4914	chr13:41959179:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SKRC20_KIDNEY	1	1	0.0306	TRUE	0	1	0	48	1	FALSE	ACH-000385
SKRC20_KIDNEY	GPR126--VTA1	2	1	GPR126	2987	chr6:142630781:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	YES	348	339	0.01	0.01	0.0204	0.0102	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	SKRC20_KIDNEY	0.01	0.01	0.0306	FALSE	0	2	0	15	1	FALSE	ACH-000385
SKRC20_KIDNEY	ITPR1--PRICKLE2-AS3	2	1	ITPR1	49642	chr3:4777038:+	PRICKLE2-AS3	79317	chr3:64184385:+	ONLY_REF_SPLICE	YES	16	0	0.16	1	0.0204	0.0102	ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1,PRICKLE2-AS3->PRICKLE2_antisense_RNA_3,chr3:64173220-64186641:+	SKRC20_KIDNEY	0.16	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	KANSL1--ARL17B	2	1	KANSL1	7536	chr17:44248221:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	39	6	0.07	0.33	0.0204	0.0102	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SKRC20_KIDNEY	0.07	0.33	0.0306	TRUE	16	5	0	9	0	FALSE	ACH-000385
SKRC20_KIDNEY	RORA--ANXA2	1	5	RORA	13827	chr15:60884586:-	ANXA2	53106	chr15:60678285:-	ONLY_REF_SPLICE	YES	4	518	0.6	0.01	0.0102	0.051	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	SKRC20_KIDNEY	0.01	0.6	0.0612	FALSE	4	3	0	6	0	FALSE	ACH-000385
SKRC20_KIDNEY	RORA--ANXA2	1	5	RORA	7133	chr15:60970856:-	ANXA2	53106	chr15:60678285:-	ONLY_REF_SPLICE	YES	0	518	1	0.01	0.0102	0.051	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	SKRC20_KIDNEY	0.01	1	0.0612	FALSE	1	1	0	1	0	FALSE	ACH-000385
SKRC20_KIDNEY	RP11-244H3.1--ZMYM1	2	1	RP11-244H3.1	1116	chr1:35450799:-	ZMYM1	20139	chr1:35578578:+	ONLY_REF_SPLICE	YES	0	16	1	0.16	0.0204	0.0102	LOCAL_INVERSION:-:+:[74473],RP11-244H3.1->chr1:35439957-35450914:-,ZMYM1->chr1:35525387-35581460:+,zinc_finger_MYM-type_containing_1	SKRC20_KIDNEY	0.16	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	ICAM1--CDC37	2	0	ICAM1	1392	chr19:10381902:+	CDC37	19207	chr19:10502382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ICAM1->Oncogene{Bushman},chr19:10381511-10397291:+,intercellular_adhesion_molecule_1,CDC37->cell_division_cycle_37,chr19:10501810-10530797:-	SKRC20_KIDNEY	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	MIR210HG--C9orf3	2	0	MIR210HG	1106	chr11:568352:-	C9orf3	43591	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MIR210HG->MIR210_host_gene,chr11:565660-568457:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SKRC20_KIDNEY	1	1	0.0204	TRUE	1	5	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKRC20_KIDNEY	1	1	0.0204	FALSE	7	44	2	41	0	FALSE	ACH-000385
SKRC20_KIDNEY	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0102	0.0204	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKRC20_KIDNEY	1	1	0.0306	FALSE	93	270	15	244	0	FALSE	ACH-000385
SKRC20_KIDNEY	GPR126--VTA1	1	1	GPR126	5956	chr6:142691930:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	YES	283	339	0.01	0.01	0.0102	0.0102	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	SKRC20_KIDNEY	0.01	0.01	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000385
SKRC20_KIDNEY	IFFO2--RP11-91K11.2	1	1	IFFO2	2019	chr1:19282162:-	RP11-91K11.2	18773	chr1:20145736:+	ONLY_REF_SPLICE	NO	27	1	0.07	0.67	0.0102	0.0102	IFFO2->chr1:19230775-19283180:-,intermediate_filament_family_orphan_2,RP11-91K11.2->chr1:20140860-20145995:+	SKRC20_KIDNEY	0.07	0.67	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000385
SKRC20_KIDNEY	LMAN2--SQSTM1	1	1	LMAN2	5644	chr5:176761285:-	SQSTM1	20475	chr5:179249958:+	ONLY_REF_SPLICE	YES	1411	1706	0	0	0.0102	0.0102	GTEx&tcga_normals:1/3694=0.03%,LMAN2->chr5:176758563-176778853:-,lectin,_mannose_binding_2,SQSTM1->chr5:179233388-179265078:+,sequestosome_1	SKRC20_KIDNEY	0	0	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000385
SKRC20_KIDNEY	RP11-120D5.1--MID1	1	1	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	1	118	0.67	0.02	0.0102	0.0102	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKRC20_KIDNEY	0.02	0.67	0.0204	FALSE	2	31	0	60	0	FALSE	ACH-000385
SKRC20_KIDNEY	RP11-275N1.1--NEBL	1	1	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	2	3	0.5	0.4	0.0102	0.0102	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	SKRC20_KIDNEY	0.4	0.5	0.0204	TRUE	0	2	0	25	2	FALSE	ACH-000385
SKRC20_KIDNEY	TMEM181--DYNLT1	1	1	TMEM181	6914	chr6:159010814:+	DYNLT1	25977	chr6:159062392:-	ONLY_REF_SPLICE	YES	157	9	0.01	0.18	0.0102	0.0102	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Testis=1},LOCAL_INVERSION:+:-:[1046],TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181,DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1	SKRC20_KIDNEY	0.01	0.18	0.0204	FALSE	0	2	0	2	0	FALSE	ACH-000385
SKRC20_KIDNEY	TRIO--UQCRC2	1	1	TRIO	12208	chr5:14316852:+	UQCRC2	81421	chr16:21973781:+	ONLY_REF_SPLICE	YES	148	777	0.01	0	0.0102	0.0102	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II	SKRC20_KIDNEY	0	0.01	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000385
SKRC20_KIDNEY	UBE2G2--PRPSAP1	1	1	UBE2G2	7524	chr21:46197214:-	PRPSAP1	28861	chr17:74309972:-	ONLY_REF_SPLICE	NO	553	234	0	0.01	0.0102	0.0102	UBE2G2->chr21:46188955-46221934:-,ubiquitin_conjugating_enzyme_E2_G2,PRPSAP1->chr17:74305567-74380602:-,phosphoribosyl_pyrophosphate_synthetase-associated_protein_1	SKRC20_KIDNEY	0	0.01	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000385
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--AC096579.13	4829	26	IGKV4-1	1756	chr2:89185668:+	AC096579.13	4759	chr2:89161074:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	43.8161	0.2359	GTEx_FI:{Lung=[count:66=pct:39.5],Blood=[count:50=pct:28.7],Whole_Blood=[count:39=pct:29.5],Spleen=[count:38=pct:33.9],Esophagus=[count:32=pct:7.9],Blood_Vessel=[count:26=pct:7.0],Stomach=[count:24=pct:27.0],Adipose_Tissue=[count:21=pct:7.0],Thyroid=[count:20=pct:11.3],Breast=[count:20=pct:18.0],Liver=[count:19=pct:15.7],Small_Intestine=[count:19=pct:34.5],Colon=[count:16=pct:8.4],Nerve=[count:8=pct:4.7],Salivary_Gland=[count:8=pct:20.5],Vagina=[count:6=pct:10.9],Pancreas=[count:6=pct:3.3],Heart=[count:5=pct:2.0],Ovary=[count:5=pct:9.4],Uterus=[count:4=pct:9.3],Prostate=[count:4=pct:6.6],Kidney=[count:3=pct:21.4],Cervix_Uteri=[count:2=pct:25.0],Skin=[count:2=pct:0.6],Testis=[count:2=pct:1.9],Adrenal_Gland=[count:2=pct:2.4],Brain=[count:1=pct:0.2],Muscle=[count:1=pct:0.4],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},LOCAL_INVERSION:+:-:[23838],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,AC096579.13->chr2:89109984-89161075:-	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	44.052	TRUE	254	1311	97	3	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--AC096579.7	4	17327	IGKV4-1	1752	chr2:89185664:+	AC096579.7	6437	chr2:89161439:-	INCL_NON_REF_SPLICE	YES	0	1511	1	0.92	0.0363	157.217	GTEx_FI:{Lung=[count:127=pct:76.0],Spleen=[count:111=pct:99.1],Blood=[count:103=pct:59.2],Colon=[count:92=pct:48.2],Whole_Blood=[count:90=pct:68.2],Esophagus=[count:72=pct:17.8],Blood_Vessel=[count:60=pct:16.3],Stomach=[count:59=pct:66.3],Adipose_Tissue=[count:54=pct:18.1],Breast=[count:49=pct:44.1],Small_Intestine=[count:48=pct:87.3],Liver=[count:46=pct:38.0],Thyroid=[count:41=pct:23.2],Salivary_Gland=[count:33=pct:84.6],Vagina=[count:18=pct:32.7],Pancreas=[count:14=pct:7.7],Prostate=[count:14=pct:23.0],Nerve=[count:12=pct:7.1],Skin=[count:12=pct:3.8],Uterus=[count:6=pct:14.0],Ovary=[count:6=pct:11.3],Kidney=[count:5=pct:35.7],Heart=[count:5=pct:2.0],Adrenal_Gland=[count:4=pct:4.7],Muscle=[count:3=pct:1.3],Testis=[count:3=pct:2.9],Fallopian_Tube=[count:3=pct:50.0],Bladder=[count:3=pct:33.3],Cervix_Uteri=[count:2=pct:25.0],Brain=[count:2=pct:0.3],Pituitary=[count:2=pct:3.8]},LOCAL_INVERSION:+:-:[19260],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,AC096579.7->chr2:89130700-89165653:-	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	157.2533	TRUE	409	2595	228	2	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--AC096579.7	1527	4448	IGKV4-1	1590	chr2:89185502:+	AC096579.7	7476	chr2:89157199:-	INCL_NON_REF_SPLICE	YES	3544	2058	0.63	0.74	13.8553	40.359	GTEx_FI:{Lung=[count:127=pct:76.0],Spleen=[count:111=pct:99.1],Blood=[count:103=pct:59.2],Colon=[count:92=pct:48.2],Whole_Blood=[count:90=pct:68.2],Esophagus=[count:72=pct:17.8],Blood_Vessel=[count:60=pct:16.3],Stomach=[count:59=pct:66.3],Adipose_Tissue=[count:54=pct:18.1],Breast=[count:49=pct:44.1],Small_Intestine=[count:48=pct:87.3],Liver=[count:46=pct:38.0],Thyroid=[count:41=pct:23.2],Salivary_Gland=[count:33=pct:84.6],Vagina=[count:18=pct:32.7],Pancreas=[count:14=pct:7.7],Prostate=[count:14=pct:23.0],Nerve=[count:12=pct:7.1],Skin=[count:12=pct:3.8],Uterus=[count:6=pct:14.0],Ovary=[count:6=pct:11.3],Kidney=[count:5=pct:35.7],Heart=[count:5=pct:2.0],Adrenal_Gland=[count:4=pct:4.7],Muscle=[count:3=pct:1.3],Testis=[count:3=pct:2.9],Fallopian_Tube=[count:3=pct:50.0],Bladder=[count:3=pct:33.3],Cervix_Uteri=[count:2=pct:25.0],Brain=[count:2=pct:0.3],Pituitary=[count:2=pct:3.8]},LOCAL_INVERSION:+:-:[19260],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,AC096579.7->chr2:89130700-89165653:-	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.74	54.2143	TRUE	246	1363	131	3	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	170	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5425	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.5425	TRUE	1	39	0	134	39	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	132	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1977	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1977	TRUE	0	0	0	518	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP24--PVT1	111	39	ARHGAP24	2646	chr4:86491874:+	PVT1	36607	chr8:128944711:+	ONLY_REF_SPLICE	YES	72	0	0.68	1	1.0072	0.3539	ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	1	1.3611	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	103	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9346	0.2087	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1433	TRUE	508	994	45	981	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFKBIZ--SSC5D	61	12	NFKBIZ	11180	chr3:101576303:+	SSC5D	26802	chr19:56012401:+	ONLY_REF_SPLICE	YES	308	2	0.19	0.97	0.5535	0.1089	NFKBIZ->NFKB_inhibitor_zeta,chr3:101546835-101579866:+,SSC5D->chr19:55999771-56030465:+,scavenger_receptor_cysteine_rich_family_member_with_5_domains	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.97	0.6624	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ARHGAP24	53	33	PVT1	8346	chr8:128903244:+	ARHGAP24	33525	chr4:86643038:+	ONLY_REF_SPLICE	YES	0	205	1	0.3	0.4809	0.2994	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.7803	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	57	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	282	1	0.17	0.98	0.5172	0.0181	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.98	0.5353	TRUE	519	3926	326	965	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--AC096579.7	1	166	IGKV4-1	1224	chr2:89185136:+	AC096579.7	7479	chr2:89157196:-	ONLY_REF_SPLICE	NO	1370	1938	0.11	0.08	0.0091	1.5062	GTEx_FI:{Lung=[count:127=pct:76.0],Spleen=[count:111=pct:99.1],Blood=[count:103=pct:59.2],Colon=[count:92=pct:48.2],Whole_Blood=[count:90=pct:68.2],Esophagus=[count:72=pct:17.8],Blood_Vessel=[count:60=pct:16.3],Stomach=[count:59=pct:66.3],Adipose_Tissue=[count:54=pct:18.1],Breast=[count:49=pct:44.1],Small_Intestine=[count:48=pct:87.3],Liver=[count:46=pct:38.0],Thyroid=[count:41=pct:23.2],Salivary_Gland=[count:33=pct:84.6],Vagina=[count:18=pct:32.7],Pancreas=[count:14=pct:7.7],Prostate=[count:14=pct:23.0],Nerve=[count:12=pct:7.1],Skin=[count:12=pct:3.8],Uterus=[count:6=pct:14.0],Ovary=[count:6=pct:11.3],Kidney=[count:5=pct:35.7],Heart=[count:5=pct:2.0],Adrenal_Gland=[count:4=pct:4.7],Muscle=[count:3=pct:1.3],Testis=[count:3=pct:2.9],Fallopian_Tube=[count:3=pct:50.0],Bladder=[count:3=pct:33.3],Cervix_Uteri=[count:2=pct:25.0],Brain=[count:2=pct:0.3],Pituitary=[count:2=pct:3.8]},LOCAL_INVERSION:+:-:[19260],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,AC096579.7->chr2:89130700-89165653:-	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.11	1.5153	TRUE	246	1363	131	3	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OR51S1--TP53I11	41	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.372	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.372	TRUE	402	216	10	229	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIST1H1C--PTMA	40	2	HIST1H1C	1217	chr6:26056483:-	PTMA	6369	chr2:232573241:+	INCL_NON_REF_SPLICE	YES	7023	32	0.01	0.57	0.3629	0.0181	HIST1H1C->Oncogene{Bushman},chr6:26055968-26056699:-,histone_cluster_1,_H1c,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.57	0.381	TRUE	0	0	0	3	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	24	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2178	0.0454	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2632	FALSE	499	1288	110	792	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.1452	0.1089	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.2541	FALSE	499	1288	110	792	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	15	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.92	0.96	0.1361	0.0635	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	0.96	0.1996	FALSE	515	4851	409	746	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	13	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	96	34	0.18	0.38	0.118	0.0726	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.38	0.1906	TRUE	267	562	48	632	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DAG1--PTPRG	12	12	DAG1	2645	chr3:49507866:+	PTPRG	28709	chr3:62063837:+	ONLY_REF_SPLICE	YES	6	1	0.8	0.96	0.1089	0.1089	DAG1->chr3:49506146-49573048:+,dystroglycan_1,PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.96	0.2178	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIST1H1C--PTMA	5	23	HIST1H1C	1231	chr6:26056469:-	PTMA	6381	chr2:232573253:+	INCL_NON_REF_SPLICE	YES	7407	32	0	0.47	0.0454	0.2087	HIST1H1C->Oncogene{Bushman},chr6:26055968-26056699:-,histone_cluster_1,_H1c,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.47	0.2541	TRUE	0	0	0	3	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	9	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.0817	0.0635	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1452	FALSE	407	2205	196	549	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0817	0.0544	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1361	FALSE	499	1288	110	792	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--AC096579.13	3	26	IGKV4-1	1755	chr2:89185667:+	AC096579.13	4758	chr2:89161075:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0.2359	GTEx_FI:{Lung=[count:66=pct:39.5],Blood=[count:50=pct:28.7],Whole_Blood=[count:39=pct:29.5],Spleen=[count:38=pct:33.9],Esophagus=[count:32=pct:7.9],Blood_Vessel=[count:26=pct:7.0],Stomach=[count:24=pct:27.0],Adipose_Tissue=[count:21=pct:7.0],Thyroid=[count:20=pct:11.3],Breast=[count:20=pct:18.0],Liver=[count:19=pct:15.7],Small_Intestine=[count:19=pct:34.5],Colon=[count:16=pct:8.4],Nerve=[count:8=pct:4.7],Salivary_Gland=[count:8=pct:20.5],Vagina=[count:6=pct:10.9],Pancreas=[count:6=pct:3.3],Heart=[count:5=pct:2.0],Ovary=[count:5=pct:9.4],Uterus=[count:4=pct:9.3],Prostate=[count:4=pct:6.6],Kidney=[count:3=pct:21.4],Cervix_Uteri=[count:2=pct:25.0],Skin=[count:2=pct:0.6],Testis=[count:2=pct:1.9],Adrenal_Gland=[count:2=pct:2.4],Brain=[count:1=pct:0.2],Muscle=[count:1=pct:0.4],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},LOCAL_INVERSION:+:-:[23838],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,AC096579.13->chr2:89109984-89161075:-	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2631	TRUE	254	1311	97	3	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP24--PVT1	8	4	ARHGAP24	2646	chr4:86491874:+	PVT1	37838	chr8:128951754:+	ONLY_REF_SPLICE	YES	72	0	0.14	1	0.0726	0.0363	ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.1089	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0817	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0817	FALSE	13	9	0	364	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	6	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	93	36	0.11	0.23	0.0544	0.0454	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.23	0.0998	TRUE	267	562	48	632	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	7	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	27	1460	0.23	0.01	0.0635	0.0091	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.23	0.0726	FALSE	0	0	0	434	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	7	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0635	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0635	TRUE	0	5	1	24	1	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	7	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0635	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0635	TRUE	22	156	2	142	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	7	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0635	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0635	TRUE	0	0	0	518	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.0363	0.0907	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.127	FALSE	467	2173	244	435	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LA16c-321D4.2--ZSCAN10	6	0	LA16c-321D4.2	1085	chr16:3004193:-	ZSCAN10	9025	chr16:3143005:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0544	0	LA16c-321D4.2->chr16:2989715-3004277:-,ZSCAN10->chr16:3138891-3149318:-,zinc_finger_and_SCAN_domain_containing_10	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIST1H1C--PTMA	5	2	HIST1H1C	1215	chr6:26056485:-	PTMA	6367	chr2:232573239:+	INCL_NON_REF_SPLICE	YES	6935	32	0	0.18	0.0454	0.0181	HIST1H1C->Oncogene{Bushman},chr6:26055968-26056699:-,histone_cluster_1,_H1c,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.18	0.0635	FALSE	0	0	0	3	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-ND2	5	2	IGH@	97382	chr14:106321312:-	MT-ND2	132632	chrM:5300:+	INCL_NON_REF_SPLICE	YES	11586	5197	0	0	0.0454	0.0181	IGH@->Oncogene{Bushman},MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0635	FALSE	0	0	0	1	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	5	1	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	1	21	0.86	0.22	0.0454	0.0091	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.86	0.0545	FALSE	1	11	0	34	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	5	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	NO	27	1442	0.18	0	0.0454	0.0091	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.18	0.0545	FALSE	0	0	0	434	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DAG1--PTPRG	2	12	DAG1	6626	chr3:49526178:+	PTPRG	28709	chr3:62063837:+	ONLY_REF_SPLICE	YES	8	1	0.64	0.93	0.0181	0.1089	DAG1->chr3:49506146-49573048:+,dystroglycan_1,PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.93	0.127	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	7	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0.0635	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0907	FALSE	499	1288	110	792	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP2A1--ALDH16A1	2	10	AP2A1	12632	chr19:50305398:+	ALDH16A1	24991	chr19:49964876:+	ONLY_REF_SPLICE	YES	216	415	0.05	0.03	0.0181	0.0907	AP2A1->adaptor_related_protein_complex_2_alpha_1_subunit,chr19:50270225-50310370:+,ALDH16A1->aldehyde_dehydrogenase_16_family_member_A1,chr19:49956426-49974305:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.05	0.1088	TRUE	0	0	0	1	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-ND2	4	2	IGH@	97632	chr14:106321062:-	MT-ND2	132561	chrM:5229:+	INCL_NON_REF_SPLICE	YES	10962	6595	0	0	0.0363	0.0181	IGH@->Oncogene{Bushman},MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0544	FALSE	0	0	0	1	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFKBIZ--SSC5D	4	2	NFKBIZ	11180	chr3:101576303:+	SSC5D	29179	chr19:56024378:+	ONLY_REF_SPLICE	YES	308	7	0.02	0.46	0.0363	0.0181	NFKBIZ->NFKB_inhibitor_zeta,chr3:101546835-101579866:+,SSC5D->chr19:55999771-56030465:+,scavenger_receptor_cysteine_rich_family_member_with_5_domains	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.46	0.0544	TRUE	0	0	0	1	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC024084.1--AC009784.3	4	0	AC024084.1	3174	chr7:135743253:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	FALSE	2	5	0	14	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DAG1--PTPRG	1	12	DAG1	4318	chr3:49514338:+	PTPRG	28709	chr3:62063837:+	ONLY_REF_SPLICE	YES	8	1	0.62	0.93	0.0091	0.1089	DAG1->chr3:49506146-49573048:+,dystroglycan_1,PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.93	0.118	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	FALSE	13	9	0	364	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED25--ALDH16A1	4	0	MED25	1335	chr19:50321873:+	ALDH16A1	20824	chr19:49964876:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0	MED25->chr19:50321539-50342073:+,mediator_complex_subunit_25,ALDH16A1->aldehyde_dehydrogenase_16_family_member_A1,chr19:49956426-49974305:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF804A--SET	4	0	ZNF804A	1705	chr2:185463797:+	SET	16350	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0	ZNF804A->chr2:185463093-185804219:+,zinc_finger_protein_804A,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP24--PVT1	3	1	ARHGAP24	2646	chr4:86491874:+	PVT1	41086	chr8:129001408:+	ONLY_REF_SPLICE	YES	72	0	0.05	1	0.0272	0.0091	ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	27	1451	0.13	0	0.0272	0.0091	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.13	0.0363	FALSE	0	0	0	434	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	1	NPM1P24	1533	chr10:74677760:-	SET	12307	chr9:131456202:+	INCL_NON_REF_SPLICE	NO	27	1472	0.13	0	0.0272	0.0091	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.13	0.0363	FALSE	0	0	0	434	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--MT-CO3	3	1	SF1	10196	chr11:64535108:-	MT-CO3	16432	chrM:9412:+	INCL_NON_REF_SPLICE	YES	457	9921	0.01	0	0.0272	0.0091	SF1->chr11:64532078-64546258:-,splicing_factor_1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0363	FALSE	0	0	0	1	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF804A--UBE2E3	3	1	ZNF804A	1705	chr2:185463797:+	UBE2E3	18970	chr2:181922420:+	ONLY_REF_SPLICE	YES	50	453	0.07	0.01	0.0272	0.0091	ZNF804A->chr2:185463093-185804219:+,zinc_finger_protein_804A,UBE2E3->chr2:181831975-181941312:+,ubiquitin_conjugating_enzyme_E2_E3	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.07	0.0363	FALSE	0	0	0	1	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC024084.1--AC009784.3	3	0	AC024084.1	1028	chr7:135710536:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	FALSE	0	0	0	3	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	FALSE	499	1288	110	792	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--TMEM8A	3	0	PPP1R12C	8950	chr19:55610152:-	TMEM8A	22895	chr16:427585:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:2=pct:0.5],Spleen=[count:2=pct:1.8],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=7;pct=0.08%;dist=Prostate=2,Spleen=2,Pancreas=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,TMEM8A->chr16:420773-437113:-,transmembrane_protein_8A	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	5	0	0	1	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WTAPP1--RUVBL1	3	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	9	252	6	66	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MZB1--UBE2D2	2	2	MZB1	1402	chr5:138725369:-	UBE2D2	10027	chr5:138979957:+	ONLY_REF_SPLICE	YES	1290	149	0	0.03	0.0181	0.0181	MZB1->chr5:138723169-138725770:-,marginal_zone_B_and_B1_cell_specific_protein,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0362	FALSE	0	0	0	2	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMTM8--CMTM7	2	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	23	40	0.12	0.07	0.0181	0.0091	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.12	0.0272	FALSE	118	557	29	88	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	2	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	72	115	0.04	0.03	0.0181	0.0091	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.0272	TRUE	3	48	0	26	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAMP1--AP3B1	2	1	SCAMP1	1214	chr5:77656552:+	AP3B1	22157	chr5:77563419:-	ONLY_REF_SPLICE	YES	44	97	0.06	0.03	0.0181	0.0091	GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[65760],SCAMP1->chr5:77656339-77776562:+,secretory_carrier_membrane_protein_1,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.06	0.0272	TRUE	0	1	1	2	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFAS1--CSE1L	2	1	ZFAS1	2031	chr20:47895745:+	CSE1L	30712	chr20:47712886:+	ONLY_REF_SPLICE	NO	564	176	0.01	0.02	0.0181	0.0091	GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Heart=[count:1=pct:0.4],Blood=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Spleen=[count:1=pct:0.9],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Skin=[count:1=pct:0.3]},ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,CSE1L->Oncogene{Bushman},chr20:47662849-47713489:+,chromosome_segregation_1_like	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC024084.1--AC009784.3	2	0	AC024084.1	2134	chr7:135715781:+	AC009784.3	9686	chr7:135862000:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	NEIGHBORS[8257],AC024084.1->chr7:135710509-135769416:+,AC009784.3->chr7:135777673-136122174:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	FALSE	1	6	0	14	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--PRPF8	2	0	AC096579.7	1523	chr2:89165131:-	PRPF8	21367	chr17:1565447:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	AC096579.7->chr2:89130700-89165653:-,PRPF8->chr17:1553923-1588176:-,pre-mRNA_processing_factor_8	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD10--ING1	2	0	ANKRD10	1345	chr13:111567072:-	ING1	22718	chr13:111371576:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Colon=[count:1=pct:0.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1},ANKRD10->ankyrin_repeat_domain_10,chr13:111530887-111567416:-,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	2	0	0	4	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT4--MTPN	2	0	CNOT4	1239	chr7:135194637:-	MTPN	25020	chr7:135636378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx&tcga_normals:1/3694=0.03%,CNOT4->CCR4-NOT_transcription_complex_subunit_4,chr7:135046547-135194875:-,MTPN->chr7:135611509-135662101:-,myotrophin	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--PHF14	2	0	CPSF6	11046	chr12:69656342:+	PHF14	44409	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--ZNF776	2	0	CPSF6	11046	chr12:69656342:+	ZNF776	27090	chr19:58268240:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,ZNF776->chr19:58258164-58269527:+,zinc_finger_protein_776	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	1	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNM2--AP2A1	2	0	DNM2	32392	chr19:10935897:+	AP2A1	51297	chr19:50304218:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	DNM2->chr19:10828755-10944164:+,dynamin_2,AP2A1->adaptor_related_protein_complex_2_alpha_1_subunit,chr19:50270225-50310370:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LARP7--PPME1	2	0	LARP7	1276	chr4:113558395:+	PPME1	22128	chr11:73936250:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LARP7->La_ribonucleoprotein_domain_family_member_7,chr4:113558120-113578748:+,PPME1->chr11:73882144-73965748:+,protein_phosphatase_methylesterase_1	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUPL2--RBBP6	2	0	NUPL2	3987	chr7:23226765:+	RBBP6	16828	chr16:24551933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,RBBP6->Oncogene{Bushman},chr16:24549014-24584184:+,retinoblastoma_binding_protein_6	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PXMP2--ANKLE2	2	0	PXMP2	2662	chr12:133266962:+	ANKLE2	21143	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_INVERSION:+:-:[4978],PXMP2->chr12:133264192-133297276:+,peroxisomal_membrane_protein_2,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	1	0	4	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRF--P2RX5	2	0	SRF	3420	chr6:43141851:+	P2RX5	24502	chr17:3577171:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	SRF->chr6:43139037-43149243:+,serum_response_factor,P2RX5->chr17:3575493-3599698:-,purinergic_receptor_P2X_5	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TET1--GNAS	2	0	TET1	5177	chr10:70360791:+	GNAS	39689	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	TET1->Oncogene{Bushman},chr10:70320413-70454239:+,tet_methylcytosine_dioxygenase_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C14orf37--PSMA3	1	1	C14orf37	2258	chr14:58758353:-	PSMA3	24451	chr14:58718837:+	ONLY_REF_SPLICE	YES	0	692	1	0	0.0091	0.0091	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0182	FALSE	1	3	0	9	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2006C1.2--WHSC1	1	1	CTD-2006C1.2	3469	chr19:12112637:+	WHSC1	55501	chr4:1976590:+	ONLY_REF_SPLICE	YES	131	246	0.02	0.01	0.0091	0.0091	CTD-2006C1.2->chr19:12098432-12157090:+,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	1	1	FBRSL1	12572	chr12:133136816:+	NOC4L	33548	chr12:132635803:+	ONLY_REF_SPLICE	NO	72	97	0.03	0.02	0.0091	0.0091	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0182	TRUE	3	48	0	26	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXO1--LINC00598	1	1	FOXO1	2015	chr13:41239720:-	LINC00598	16798	chr13:41034543:-	ONLY_REF_SPLICE	YES	54	0	0.04	1	0.0091	0.0091	NEIGHBORS[74661],FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,LINC00598->chr13:41025131-41055143:-,long_intergenic_non-protein_coding_RNA_598	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.0182	FALSE	8	15	1	11	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HS2ST1--SEP15	1	1	HS2ST1	1513	chr1:87380843:+	SEP15	28222	chr1:87346408:-	ONLY_REF_SPLICE	YES	167	908	0.01	0	0.0091	0.0091	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0182	FALSE	0	3	0	8	1	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--CNN2	1	1	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	391	807	0.01	0	0.0091	0.0091	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0182	FALSE	35	34	3	30	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-35G9.3--HNRNPUL1	1	1	RP11-35G9.3	3787	chr18:55309284:+	HNRNPUL1	18928	chr19:41774128:+	ONLY_REF_SPLICE	YES	142	1245	0.01	0	0.0091	0.0091	RP11-35G9.3->chr18:55297534-55405276:+,HNRNPUL1->chr19:41768401-41813503:+,heterogeneous_nuclear_ribonucleoprotein_U_like_1	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000398
RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF4--FAF1	1	1	TCF4	11275	chr18:53252511:-	FAF1	69243	chr1:51061888:-	ONLY_REF_SPLICE	YES	267	120	0.01	0.02	0.0091	0.0091	TCF4->chr18:52889562-53332018:-,transcription_factor_4,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	RI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000398
CH157MN_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	145	92	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	0.8928	0.5665	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.99	1	1.4593	TRUE	508	994	45	981	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	SLC38A2--PTMA	112	1	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	1635	7	0.06	0.94	0.6896	0.0062	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.06	0.94	0.6958	TRUE	0	0	0	10	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	KRR1--CNTLN	101	0	KRR1	8833	chr12:75893487:-	CNTLN	18802	chr9:17168448:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6219	0	KRR1->KRR1,_small_subunit_processome_component_homolog,chr12:75890684-75905416:-,CNTLN->centlein,chr9:17134980-17503921:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.6219	TRUE	0	4	0	1	4	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	93	14	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	951	15	0.1	0.88	0.5726	0.0862	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.1	0.88	0.6588	TRUE	519	3926	326	965	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	DUSP5P1--PCNXL2	85	15	DUSP5P1	1123	chr1:228745007:+	PCNXL2	43873	chr1:233161145:-	ONLY_REF_SPLICE	YES	0	16	1	0.86	0.5234	0.0924	DUSP5P1->chr1:228744885-228788150:+,dual_specificity_phosphatase_5_pseudogene_1,PCNXL2->chr1:233119181-233431459:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.6158	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	53	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3263	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.3263	TRUE	7	10	0	216	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	37	62	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	120	100	0.45	0.5	0.2278	0.3818	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.45	0.5	0.6096	TRUE	267	562	48	632	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CDH13--RP11-22H5.2	32	10	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	335	0	0.11	1	0.197	0.0616	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.2586	FALSE	14	31	0	36	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	FASN--CCDC57	28	15	FASN	2346	chr17:80054195:-	CCDC57	60141	chr17:80059742:-	ONLY_REF_SPLICE	YES	760	72	0.05	0.37	0.1724	0.0924	LOCAL_REARRANGEMENT:-:[3128],FASN->chr17:80036214-80056208:-,fatty_acid_synthase,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.05	0.37	0.2648	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	31	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1909	0.0062	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.1971	FALSE	462	80	0	856	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	29	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1786	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.1786	TRUE	0	0	0	518	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	16	49	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	114	101	0.36	0.39	0.0985	0.3017	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.36	0.39	0.4002	TRUE	267	562	48	632	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	TP53--SHBG	21	15	TP53	7497	chr17:7573927:-	SHBG	17612	chr17:7533734:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.1293	0.0924	LOCAL_INVERSION:-:+:[28397],TP53->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr17:7565097-7590856:-,tumor_protein_p53,SHBG->Oncogene{Bushman},chr17:7517382-7536700:+,sex_hormone_binding_globulin	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.97	1	0.2217	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP6	24	1	MT-ND4	1209	chrM:10968:+	MT-ATP6	5317	chrM:8465:+	INCL_NON_REF_SPLICE	YES	16666	0	0	1	0.1478	0.0062	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	1	0.154	FALSE	21	91	18	8	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	APEX2--ALAS2	18	22	APEX2	4512	chrX:55030301:+	ALAS2	13283	chrX:55052448:-	ONLY_REF_SPLICE	YES	801	0	0.05	1	0.1108	0.1355	NEIGHBORS_OVERLAP:+:-:[2],APEX2->apurinic/apyrimidinic_endodeoxyribonuclease_2,chrX:55026790-55035490:+,ALAS2->5'-aminolevulinate_synthase_2,chrX:55035488-55057497:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.2463	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	20	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	NO	112	3808	0.16	0.01	0.1231	0.0062	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.16	0.1293	FALSE	0	0	0	434	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	16	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	15	1	0.59	0.0985	0.0369	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.59	1	0.1354	TRUE	458	1351	185	561	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CNIH3--MIA3	13	14	CNIH3	23530	chr1:224922408:+	MIA3	48726	chr1:222832064:+	ONLY_REF_SPLICE	YES	541	554	0.05	0.05	0.08	0.0862	CNIH3->chr1:224622362-224928251:+,cornichon_family_AMPA_receptor_auxiliary_protein_3,MIA3->chr1:222791428-222841354:+,melanoma_inhibitory_activity_family_member_3	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.05	0.05	0.1662	TRUE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	12	18	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.86	1	0.0739	0.1108	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.1847	FALSE	407	2205	196	549	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	ELP2--GALNT1	14	9	ELP2	22621	chr18:33750159:+	GALNT1	41601	chr18:33269137:+	ONLY_REF_SPLICE	YES	154	313	0.13	0.07	0.0862	0.0554	ELP2->chr18:33709407-33757909:+,elongator_acetyltransferase_complex_subunit_2,GALNT1->chr18:33161081-33291798:+,polypeptide_N-acetylgalactosaminyltransferase_1	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.07	0.13	0.1416	TRUE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	16	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	14250	34779	0	0	0.0985	0.0062	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0	0.1047	FALSE	183	104	9	328	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	3	50	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	114	100	0.32	0.35	0.0185	0.3079	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.32	0.35	0.3264	TRUE	267	562	48	632	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	12	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	1	0.83	0.96	0.0739	0.0739	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.83	0.96	0.1478	FALSE	515	4851	409	746	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	12	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.7	1	0.0739	0.0246	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.7	1	0.0985	FALSE	292	1546	117	613	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	SDHAP1--GPR160	9	15	SDHAP1	3107	chr3:195712498:-	GPR160	28724	chr3:169797562:+	ONLY_REF_SPLICE	YES	223	22	0.1	0.52	0.0554	0.0924	SDHAP1->chr3:195686619-195717189:-,succinate_dehydrogenase_complex_flavoprotein_subunit_A_pseudogene_1,GPR160->G_protein-coupled_receptor_160,chr3:169755717-169803191:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.1	0.52	0.1478	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	GAPDH--MT-ATP8	12	2	GAPDH	4989	chr12:6647105:+	MT-ATP8	8537	chrM:8481:+	INCL_NON_REF_SPLICE	YES	18579	610	0	0.02	0.0739	0.0123	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0862	FALSE	0	0	0	2	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	DUSP5P1--PCNXL2	11	5	DUSP5P1	1123	chr1:228745007:+	PCNXL2	45127	chr1:233152900:-	ONLY_REF_SPLICE	YES	0	53	1	0.23	0.0677	0.0308	DUSP5P1->chr1:228744885-228788150:+,dual_specificity_phosphatase_5_pseudogene_1,PCNXL2->chr1:233119181-233431459:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.23	1	0.0985	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTG1	11	3	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	11964	3	0	0.82	0.0677	0.0185	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.82	0.0862	FALSE	0	0	0	64	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PTPN12--PHTF2	10	6	PTPN12	5986	chr7:77200503:+	PHTF2	30144	chr7:77469538:+	ONLY_REF_SPLICE	YES	505	107	0.03	0.13	0.0616	0.0369	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.03	0.13	0.0985	TRUE	0	1	0	1	1	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MIR4435-1HG--ANAPC1	9	9	MIR4435-1HG	14499	chr2:112101638:-	ANAPC1	48681	chr2:112596089:-	ONLY_REF_SPLICE	NO	181	151	0.09	0.11	0.0554	0.0554	MIR4435-1HG->chr2:111953927-112252677:-,ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.09	0.11	0.1108	TRUE	0	1	0	4	1	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	AP000525.9--LA16c-60G3.6	10	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	15	0	0.44	1	0.0616	0.0123	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.44	1	0.0739	TRUE	0	42	0	133	42	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	10	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	13803	33875	0	0	0.0616	0.0062	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0	0.0678	FALSE	183	104	9	328	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	9	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0.0062	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0616	FALSE	462	80	0	856	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RPS6--B2M	9	1	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	10773	0	0	1	0.0554	0.0062	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	1	0.0616	FALSE	0	0	0	28	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MTAP--DMRTA1	6	11	MTAP	12211	chr9:21859424:+	DMRTA1	25056	chr9:22451063:+	ONLY_REF_SPLICE	YES	2	5	0.89	0.77	0.0369	0.0677	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.77	0.89	0.1046	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-6N13.1--CTD-2374C24.1	7	7	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0.0431	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0862	TRUE	5	4	0	46	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP6	6	10	MT-ND4	1771	chrM:11530:+	MT-ATP6	5425	chrM:8573:+	INCL_NON_REF_SPLICE	YES	22703	0	0	1	0.0369	0.0616	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	1	0.0985	FALSE	21	137	19	8	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	7	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0431	0.0308	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.0739	FALSE	499	1288	110	792	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP6	4	16	MT-ND4	1828	chrM:11587:+	MT-ATP6	5324	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21116	0	0	1	0.0246	0.0985	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	1	0.1231	FALSE	21	137	19	8	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	7	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	37	1	0.23	0.0431	0.0246	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.23	1	0.0677	TRUE	465	1949	224	605	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	3	20	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	6	0	0.79	1	0.0185	0.1231	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.79	1	0.1416	FALSE	192	492	57	212	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PKM--PPIA	6	6	PKM	16758	chr15:72494872:-	PPIA	23273	chr7:44836291:+	INCL_NON_REF_SPLICE	YES	12115	0	0	1	0.0369	0.0369	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	1	0.0738	FALSE	0	0	0	18	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	6	6	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	NO	7144	0	0	1	0.0369	0.0369	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	1	0.0738	FALSE	0	1	0	48	1	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CDH13--RP11-22H5.2	3	17	CDH13	8102	chr16:82756714:+	RP11-22H5.2	41963	chr16:82862870:+	INCL_NON_REF_SPLICE	YES	387	0	0.05	1	0.0185	0.1047	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.1232	FALSE	0	0	0	3	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP6	7	1	MT-ND4	1216	chrM:10975:+	MT-ATP6	5320	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16819	0	0	1	0.0431	0.0062	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	1	0.0493	FALSE	21	91	18	8	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	7	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	YES	112	3730	0.07	0	0.0431	0.0062	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.07	0.0493	FALSE	0	0	0	434	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	EIF1--RPS28	7	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0431	TRUE	0	0	0	81	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	3	14	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	6	1	0.74	0.94	0.0185	0.0862	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.74	0.94	0.1047	FALSE	467	2173	244	435	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP6	6	1	MT-ND4	1209	chrM:10968:+	MT-ATP6	5320	chrM:8468:+	INCL_NON_REF_SPLICE	NO	16666	0	0	1	0.0369	0.0062	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	1	0.0431	FALSE	21	91	18	8	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	6	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0.0062	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0431	FALSE	499	1288	110	792	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	6	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	112	3134	0.06	0	0.0369	0.0062	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.06	0.0431	FALSE	0	0	0	434	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	C11orf68--DRAP1	6	0	C11orf68	1088	chr11:65686501:-	DRAP1	6515	chr11:65686932:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0369	TRUE	0	1	0	6	1	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CDH13--RP11-22H5.2	2	16	CDH13	7013	chr16:82753080:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	386	0	0.04	1	0.0123	0.0985	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.1108	FALSE	1	1	0	8	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CDH13--RP11-22H5.2	3	12	CDH13	2482	chr16:82671372:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	384	0	0.04	1	0.0185	0.0739	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0924	FALSE	0	5	0	7	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	6	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0369	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0369	TRUE	347	1186	183	220	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PHLDA1--MT-ATP8	5	4	PHLDA1	4291	chr12:76424422:-	MT-ATP8	12595	chrM:8474:+	INCL_NON_REF_SPLICE	YES	2514	140	0	0.06	0.0308	0.0246	PHLDA1->chr12:76419227-76427712:-,pleckstrin_homology_like_domain_family_A_member_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.06	0.0554	FALSE	0	0	0	3	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	SDHAP1--GPR160	2	16	SDHAP1	3107	chr3:195712498:-	GPR160	26873	chr3:169794911:+	ONLY_REF_SPLICE	YES	223	23	0.07	0.44	0.0123	0.0985	SDHAP1->chr3:195686619-195717189:-,succinate_dehydrogenase_complex_flavoprotein_subunit_A_pseudogene_1,GPR160->G_protein-coupled_receptor_160,chr3:169755717-169803191:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.07	0.44	0.1108	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	APEX2--ALAS2	4	7	APEX2	4512	chrX:55030301:+	ALAS2	21673	chrX:55040081:-	ONLY_REF_SPLICE	YES	801	8	0.01	0.58	0.0246	0.0431	NEIGHBORS_OVERLAP:+:-:[2],APEX2->apurinic/apyrimidinic_endodeoxyribonuclease_2,chrX:55026790-55035490:+,ALAS2->5'-aminolevulinate_synthase_2,chrX:55035488-55057497:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.58	0.0677	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	4	7	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4314	35153	0	0	0.0246	0.0431	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0	0.0677	FALSE	183	104	9	328	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PARP1--SDE2	5	3	PARP1	2436	chr1:226589915:-	SDE2	29696	chr1:226183084:-	ONLY_REF_SPLICE	YES	1423	342	0.01	0.02	0.0308	0.0185	PARP1->chr1:226548392-226595780:-,poly(ADP-ribose)_polymerase_1,SDE2->SDE2_telomere_maintenance_homolog,chr1:226170403-226187032:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0493	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0246	0.0369	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0615	FALSE	499	1288	110	792	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	IGFBP4--NPM1	5	1	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	1596	8	0	0.43	0.0308	0.0062	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.43	0.037	FALSE	0	0	0	38	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0185	0.0554	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.0739	FALSE	499	1288	110	792	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RPSAP52--HMGA2	5	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	13	2725	0.32	0	0.0308	0.0062	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.32	0.037	FALSE	0	59	0	125	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	8	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0185	0.0493	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.85	1	0.0678	FALSE	499	1288	110	792	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PHLDA1--MT-ATP8	4	4	PHLDA1	4283	chr12:76424430:-	MT-ATP8	12601	chrM:8480:+	INCL_NON_REF_SPLICE	YES	2373	539	0	0.01	0.0246	0.0246	PHLDA1->chr12:76419227-76427712:-,pleckstrin_homology_like_domain_family_A_member_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0492	FALSE	0	0	0	3	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-640M9.1--SEC22B	2	12	RP11-640M9.1	3158	chr1:144519813:-	SEC22B	25754	chr1:145103908:+	ONLY_REF_SPLICE	YES	112	1340	0.11	0.01	0.0123	0.0739	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.11	0.0862	FALSE	14	18	7	11	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	5	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0308	TRUE	0	1	0	48	1	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	GAPDH--MT-ATP8	4	3	GAPDH	4989	chr12:6647105:+	MT-ATP8	8524	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18579	13	0	0.35	0.0246	0.0185	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.35	0.0431	FALSE	0	0	0	2	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MME--LINC00886	3	6	MME	7070	chr3:154802883:+	LINC00886	37699	chr3:156468972:-	ONLY_REF_SPLICE	YES	1271	14	0.01	0.39	0.0185	0.0369	MME->Oncogene{Bushman},chr3:154741913-154901497:+,membrane_metallo-endopeptidase,LINC00886->chr3:156465135-156534851:-,long_intergenic_non-protein_coding_RNA_886	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.39	0.0554	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0246	0.0123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0369	FALSE	499	1288	110	792	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	10	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	32	0	0.27	1	0.0123	0.0616	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.27	1	0.0739	FALSE	164	806	69	479	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	4	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0.0123	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0369	TRUE	477	1352	189	275	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	4	2	XXbac-BPG252P9.9	1137	chr6:30691518:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	7519	0	0	1	0.0246	0.0123	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	1	0.0369	FALSE	0	1	0	48	1	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CDH13--RP11-22H5.2	1	13	CDH13	3588	chr16:82673070:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	NO	383	0	0.04	1	0.0062	0.08	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0862	FALSE	0	2	0	10	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	GAPDH--MT-ATP8	4	1	GAPDH	4370	chr12:6646486:+	MT-ATP8	8534	chrM:8478:+	INCL_NON_REF_SPLICE	YES	26795	417	0	0.01	0.0246	0.0062	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0308	FALSE	0	0	0	2	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP6	4	1	MT-ND4	1213	chrM:10972:+	MT-ATP6	5324	chrM:8472:+	INCL_NON_REF_SPLICE	NO	16792	0	0	1	0.0246	0.0062	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	1	0.0308	FALSE	21	91	18	8	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	4	1	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0246	0.0062	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0308	FALSE	462	80	0	856	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	3	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	29	0	0.22	1	0.0185	0.0308	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.22	1	0.0493	FALSE	125	705	46	456	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-476K15.1--CTD-2015H3.2	3	5	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	56	0	0.12	1	0.0185	0.0308	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.12	1	0.0493	FALSE	0	46	0	73	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	4	1	XXbac-BPG252P9.9	1083	chr6:30691572:-	TUBBP2	4900	chr13:41959193:-	INCL_NON_REF_SPLICE	YES	5829	0	0	1	0.0246	0.0062	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	1	0.0308	FALSE	0	1	0	48	1	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	4	1	XXbac-BPG252P9.9	1068	chr6:30691587:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	4829	0	0	1	0.0246	0.0062	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	1	0.0308	FALSE	0	1	0	48	1	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CDH13--RP11-22H5.2	1	12	CDH13	1335	chr16:82660742:+	RP11-22H5.2	37471	chr16:82856817:+	ONLY_REF_SPLICE	YES	335	0	0.04	1	0.0062	0.0739	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0801	FALSE	0	1	0	7	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	IGFBP4--NPM1	4	0	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0246	0	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0246	TRUE	0	0	0	38	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PHLDA1--MT-ATP8	3	4	PHLDA1	4338	chr12:76424375:-	MT-ATP8	12605	chrM:8484:+	INCL_NON_REF_SPLICE	YES	2731	790	0	0.01	0.0185	0.0246	PHLDA1->chr12:76419227-76427712:-,pleckstrin_homology_like_domain_family_A_member_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0431	FALSE	0	0	0	3	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PHLDA1--MT-ATP8	3	4	PHLDA1	4273	chr12:76424440:-	MT-ATP8	12548	chrM:8427:+	INCL_NON_REF_SPLICE	YES	2406	0	0	1	0.0185	0.0246	PHLDA1->chr12:76419227-76427712:-,pleckstrin_homology_like_domain_family_A_member_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	1	0.0431	FALSE	0	0	0	3	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1003	chr6:30691652:-	TUBBP2	4896	chr13:41959197:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0246	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0246	TRUE	0	1	0	48	1	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	ELP2--GALNT1	3	3	ELP2	21360	chr18:33747185:+	GALNT1	41601	chr18:33269137:+	ONLY_REF_SPLICE	YES	192	313	0.03	0.02	0.0185	0.0185	ELP2->chr18:33709407-33757909:+,elongator_acetyltransferase_complex_subunit_2,GALNT1->chr18:33161081-33291798:+,polypeptide_N-acetylgalactosaminyltransferase_1	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.037	TRUE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTG1	3	3	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	12093	3	0	0.67	0.0185	0.0185	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.67	0.037	FALSE	0	0	0	64	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	GAPDH--MT-ATP8	3	3	GAPDH	4989	chr12:6647105:+	MT-ATP8	8493	chrM:8437:+	INCL_NON_REF_SPLICE	YES	18579	0	0	1	0.0185	0.0185	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	1	0.037	FALSE	0	0	0	2	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-640M9.1--SEC22B	2	7	RP11-640M9.1	3158	chr1:144519813:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	YES	112	1547	0.07	0.01	0.0123	0.0431	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.07	0.0554	FALSE	20	16	6	14	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-6N13.1--CTD-2374C24.1	2	7	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0.0431	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0554	TRUE	5	12	0	42	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	3	2	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	7667	542	0	0.01	0.0185	0.0123	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0308	FALSE	0	20	0	35	2	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	FLNA--ALDOA	3	2	FLNA	18677	chrX:153579989:-	ALDOA	31062	chr16:30077060:+	INCL_NON_REF_SPLICE	NO	3939	2068	0	0	0.0185	0.0123	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.24%,FLNA->chrX:153576892-153603006:-,filamin_A,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0	0.0308	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP6	3	2	MT-ND4	1253	chrM:11012:+	MT-ATP6	5366	chrM:8514:+	INCL_NON_REF_SPLICE	YES	17749	0	0	1	0.0185	0.0123	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	1	0.0308	FALSE	21	93	18	8	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-640M9.1--SEC22B	2	6	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	YES	98	1547	0.08	0.01	0.0123	0.0369	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.08	0.0492	FALSE	20	16	6	14	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-640M9.1--SEC22B	1	10	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	25754	chr1:145103908:+	ONLY_REF_SPLICE	YES	98	1340	0.1	0.01	0.0062	0.0616	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.1	0.0678	FALSE	14	18	7	11	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	ARF1--MT-CO1	3	1	ARF1	6843	chr1:228285395:+	MT-CO1	11358	chrM:5901:+	INCL_NON_REF_SPLICE	YES	4316	0	0	1	0.0185	0.0062	ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	1	0.0247	FALSE	0	0	0	7	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	GAPDH--MT-ATP8	3	1	GAPDH	4266	chr12:6646382:+	MT-ATP8	8537	chrM:8481:+	INCL_NON_REF_SPLICE	YES	27107	610	0	0.01	0.0185	0.0062	GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0247	FALSE	0	0	0	2	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP6	3	1	MT-ND4	1220	chrM:10979:+	MT-ATP6	5326	chrM:8474:+	INCL_NON_REF_SPLICE	NO	16888	0	0	1	0.0185	0.0062	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	1	0.0247	FALSE	21	91	18	8	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	3	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	112	3473	0.03	0	0.0185	0.0062	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0247	FALSE	0	0	0	434	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	3	1	NPM1P24	1533	chr10:74677760:-	SET	12301	chr9:131456196:+	INCL_NON_REF_SPLICE	YES	112	3515	0.03	0	0.0185	0.0062	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0247	FALSE	0	0	0	434	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PSD3--CSGALNACT1	3	1	PSD3	11776	chr8:18725184:-	CSGALNACT1	52240	chr8:19459376:-	ONLY_REF_SPLICE	YES	22	6	0.15	0.4	0.0185	0.0062	{Klijn_CCL:Breast=1},PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,CSGALNACT1->chondroitin_sulfate_N-acetylgalactosaminyltransferase_1,chr8:19261672-19615540:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.15	0.4	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	YWHAZ--ZNF706	3	1	YWHAZ	2460	chr8:101964157:-	ZNF706	24352	chr8:102213971:-	ONLY_REF_SPLICE	YES	1463	1542	0	0	0.0185	0.0062	GTEx_FI:{Skin=[count:2=pct:0.6],Blood=[count:2=pct:1.1],Esophagus=[count:1=pct:0.2],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta,ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0	0.0247	FALSE	5	5	0	7	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	EIF1--RPS28	3	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0185	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0185	TRUE	0	0	0	81	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	GOLT1B--RECQL	3	0	GOLT1B	1168	chr12:21654882:+	RECQL	24479	chr12:21624581:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},LOCAL_INVERSION:+:-:[112],GOLT1B->chr12:21654715-21671342:+,golgi_transport_1B,RECQL->Oncogene{Bushman},RecQ_like_helicase,chr12:21621845-21654603:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	LYRM4--FARS2	3	0	LYRM4	1292	chr6:5260881:-	FARS2	27758	chr6:5404775:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	GTEx_v2:{count=2;pct=0.02%;dist=Ovary=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[105],LYRM4->LYR_motif_containing_4,chr6:5102827-5261172:-,FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP6	3	0	MT-ND4	1248	chrM:11007:+	MT-ATP6	5787	chrM:8935:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0185	0	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0185	FALSE	21	93	18	8	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP6	3	0	MT-ND4	1218	chrM:10977:+	MT-ATP6	5511	chrM:8659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0185	0	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0185	FALSE	21	91	18	8	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PDHX--CD44	3	0	PDHX	3068	chr11:34953031:+	CD44	37425	chr11:35236399:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0185	TRUE	0	0	0	4	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PRMT3--CTD-3012A18.1	3	0	PRMT3	18100	chr11:20515800:+	CTD-3012A18.1	24375	chr11:29573907:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	PRMT3->chr11:20409076-20530840:+,protein_arginine_methyltransferase_3,CTD-3012A18.1->chr11:29540623-29574186:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PARP1--SDE2	2	3	PARP1	2436	chr1:226589915:-	SDE2	30814	chr1:226180703:-	ONLY_REF_SPLICE	YES	1423	288	0	0.02	0.0123	0.0185	PARP1->chr1:226548392-226595780:-,poly(ADP-ribose)_polymerase_1,SDE2->SDE2_telomere_maintenance_homolog,chr1:226170403-226187032:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0308	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	2	2	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	6643	542	0	0.01	0.0123	0.0123	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0246	FALSE	0	7	0	19	1	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	FANCD2--BRPF1	2	2	FANCD2	2315	chr3:10070405:+	BRPF1	50305	chr3:9780683:+	ONLY_REF_SPLICE	YES	284	78	0.01	0.05	0.0123	0.0123	FANCD2->ArcherDX_panel,Fanconi_anemia_complementation_group_D2,FoundationOne_panel,Oncogene{Bushman},chr3:10068098-10143614:+,BRPF1->bromodomain_and_PHD_finger_containing_1,chr3:9773413-9789702:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.05	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MTAP--DMRTA1	1	6	MTAP	9899	chr9:21854869:+	DMRTA1	25056	chr9:22451063:+	ONLY_REF_SPLICE	YES	44	5	0.14	0.58	0.0062	0.0369	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.14	0.58	0.0431	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PDHX--CD44	2	2	PDHX	3068	chr11:34953031:+	CD44	20666	chr11:35198122:+	ONLY_REF_SPLICE	YES	629	6847	0.01	0	0.0123	0.0123	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0246	FALSE	0	0	0	5	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PTPN12--PHTF2	2	2	PTPN12	1371	chr7:77166962:+	PHTF2	30144	chr7:77469538:+	ONLY_REF_SPLICE	YES	124	107	0.03	0.04	0.0123	0.0123	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.03	0.04	0.0246	TRUE	0	1	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	FADS2--TMEM258	2	1	FADS2	1049	chr11:61560500:+	TMEM258	29821	chr11:61558074:-	ONLY_REF_SPLICE	YES	0	5	1	0.38	0.0123	0.0062	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[178],FADS2->chr11:61560452-61634826:+,fatty_acid_desaturase_2,TMEM258->chr11:61535973-61560274:-,transmembrane_protein_258	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.38	1	0.0185	TRUE	0	2	0	5	2	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	FASN--CCDC57	1	5	FASN	1212	chr17:80055997:-	CCDC57	60141	chr17:80059742:-	ONLY_REF_SPLICE	NO	126	72	0.05	0.08	0.0062	0.0308	LOCAL_REARRANGEMENT:-:[3128],FASN->chr17:80036214-80056208:-,fatty_acid_synthase,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.05	0.08	0.037	TRUE	1	2	0	1	2	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MIR4435-1HG--ANAPC1	1	5	MIR4435-1HG	1216	chr2:112252462:-	ANAPC1	48681	chr2:112596089:-	ONLY_REF_SPLICE	YES	1233	151	0	0.04	0.0062	0.0308	MIR4435-1HG->chr2:111953927-112252677:-,ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.04	0.037	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	7	6	0.3	0.33	0.0123	0.0062	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.3	0.33	0.0185	FALSE	25	145	6	90	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PTPN12--PHTF2	2	1	PTPN12	1371	chr7:77166962:+	PHTF2	32326	chr7:77522925:+	ONLY_REF_SPLICE	YES	124	151	0.02	0.02	0.0123	0.0062	PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.02	0.02	0.0185	TRUE	0	1	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-155G15.2--RP11-1E3.1	2	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0.0062	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0185	FALSE	46	201	11	112	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-476K15.1--CTD-2015H3.2	1	5	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	56	0	0.1	1	0.0062	0.0308	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.1	1	0.037	FALSE	0	46	0	73	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	USP48--EYA3	2	1	USP48	29193	chr1:22016467:-	EYA3	57096	chr1:28304985:-	ONLY_REF_SPLICE	YES	464	97	0.01	0.03	0.0123	0.0062	USP48->chr1:22004791-22110099:-,ubiquitin_specific_peptidase_48,EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0185	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	YWHAE--CRK	2	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	5477	404	0	0.01	0.0123	0.0062	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0185	FALSE	6	50	7	115	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	AMOTL2--MT2A	2	0	AMOTL2	2138	chr3:134093184:-	MT2A	18794	chr16:56642904:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	AMOTL2->angiomotin_like_2,chr3:134074716-134094321:-,MT2A->chr16:56642111-56643409:+,metallothionein_2A	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	ATIC--STT3A	2	0	ATIC	15178	chr2:216211664:+	STT3A	36366	chr11:125482487:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	ATIC->5-aminoimidazole-4-carboxamide_ribonucleotide_formyltransferase/IMP_cyclohydrolase,Oncogene{Bushman},chr2:216176540-216214487:+,STT3A->STT3A,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr11:125461607-125495110:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	C20orf197--AD000671.6	2	0	C20orf197	1084	chr20:58631063:+	AD000671.6	10297	chr19:36235322:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	C20orf197->chr20:58630980-58648008:+,chromosome_20_open_reading_frame_197,AD000671.6->chr19:36230153-36236333:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CDH13--CCDC50	2	0	CDH13	1335	chr16:82660742:+	CCDC50	39984	chr3:191078858:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,CCDC50->chr3:191046866-191116459:+,coiled-coil_domain_containing_50	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	47891	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	1	3	0	10	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	2	8	0	24	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CLIC4--PHF14	2	0	CLIC4	3416	chr1:25124342:+	PHF14	38742	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CPSF6--GCN1L1	2	0	CPSF6	11046	chr12:69656342:+	GCN1L1	62827	chr12:120565778:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,GCN1L1->chr12:120565007-120632513:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CYHR1--GDI2	2	0	CYHR1	10965	chr8:145677742:-	GDI2	30138	chr10:5808258:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	EXOSC7--ZNF35	2	0	EXOSC7	2094	chr3:45017826:+	ZNF35	21513	chr3:44700193:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	EXOSC7->chr3:45016733-45077558:+,exosome_component_7,ZNF35->Oncogene{Bushman},chr3:44690219-44702283:+,zinc_finger_protein_35	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	HNRNPR--ACTR3	2	0	HNRNPR	7577	chr1:23648021:-	ACTR3	37216	chr2:114713200:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	HNRNPR->chr1:23630264-23670829:-,heterogeneous_nuclear_ribonucleoprotein_R,ACTR3->ARP3_actin-related_protein_3_homolog_(yeast),chr2:114647537-114720173:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MIR29B1--TUBGCP5	2	0	MIR29B1	2201	chr7:130596869:-	TUBGCP5	27457	chr15:22861737:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	MIR29B1->chr7:130561495-130598069:-,microRNA_29b-1,TUBGCP5->chr15:22833395-22873892:+,tubulin_gamma_complex_associated_protein_5	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PANK4--GNB1	2	0	PANK4	1137	chr1:2457903:-	GNB1	20321	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	PANK4->chr1:2439972-2458039:-,pantothenate_kinase_4,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PDS5B--SPG20	2	0	PDS5B	1167	chr13:33160730:+	SPG20	52075	chr13:36909969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,SPG20->chr13:36875775-36944317:-,spastic_paraplegia_20_(Troyer_syndrome)	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PLEC--FOXJ3	2	0	PLEC	25245	chr8:145001145:-	FOXJ3	42023	chr1:42789498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	PLEC->chr8:144989321-145050902:-,plectin,FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RGS3--RPL19	2	0	RGS3	40099	chr9:116358045:+	RPL19	47105	chr17:37358570:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	RGS3->Oncogene{Bushman},chr9:116207011-116360018:+,regulator_of_G-protein_signaling_3,RPL19->chr17:37356536-37360980:+,ribosomal_protein_L19	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RORA--ZXDC	2	0	RORA	13827	chr15:60884586:-	ZXDC	54771	chr3:126158570:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ZXDC->ZXD_family_zinc_finger_C,chr3:126156444-126194762:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	2	0	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	FALSE	141	264	50	91	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-6N13.1--CTD-2374C24.1	1	4	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	20885	chr5:104311586:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0062	0.0246	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0308	TRUE	1	2	0	8	1	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-820L6.1--C9orf3	2	0	RP11-820L6.1	11286	chr11:122026259:-	C9orf3	51208	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	RP11-820L6.1->chr11:122026130-122293579:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	1	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP4-769N13.6--TOP1	2	0	RP4-769N13.6	4703	chrX:101860581:+	TOP1	27893	chr20:39741422:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	RP4-769N13.6->chrX:101854440-101969599:+,TOP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:39657458-39753127:+,topoisomerase_(DNA)_I	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	SERP1--NIPA2	2	0	SERP1	1285	chr3:150320731:-	NIPA2	17069	chr15:23027922:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0123	0	SERP1->chr3:150259781-150321015:-,stress-associated_endoplasmic_reticulum_protein_1,NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0123	TRUE	0	0	0	1	0	TRUE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	ATF2--CHN1	1	2	ATF2	17534	chr2:175945388:-	CHN1	26246	chr2:175816930:-	ONLY_REF_SPLICE	YES	197	28	0.01	0.1	0.0062	0.0123	NEIGHBORS[66881],ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-,CHN1->Oncogene{Bushman},chimerin_1,chr2:175664091-175870097:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.1	0.0185	FALSE	0	0	0	7	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CD44--PDHX	1	2	CD44	1501	chr11:35160917:+	PDHX	33796	chr11:34969053:+	ONLY_REF_SPLICE	YES	6643	595	0	0.01	0.0062	0.0123	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0185	FALSE	0	1	0	5	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	1	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	26959	chr10:75454562:-	ONLY_REF_SPLICE	NO	951	24	0	0.11	0.0062	0.0123	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.11	0.0185	FALSE	1	3	0	8	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	AP3B1--LHFPL2	1	1	AP3B1	1304	chr5:77590276:-	LHFPL2	44896	chr5:77928191:-	ONLY_REF_SPLICE	YES	379	163	0.01	0.01	0.0062	0.0062	AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-,LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	AP3S1--COMMD10	1	1	AP3S1	5345	chr5:115205825:+	COMMD10	21553	chr5:115469765:+	ONLY_REF_SPLICE	YES	1156	206	0	0.01	0.0062	0.0062	GTEx&tcga_normals:14/3694=0.38%,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+,COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0124	FALSE	0	0	0	2	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	ATP6V1H--TCEA1	1	1	ATP6V1H	7809	chr8:54742004:-	TCEA1	26873	chr8:54923052:-	ONLY_REF_SPLICE	YES	605	1651	0	0	0.0062	0.0062	GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_EBV-transformed_lymphocytes=1,Whole_Blood=1},ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-,TCEA1->Oncogene{Bushman},chr8:54879112-54935089:-,transcription_elongation_factor_A1	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0	0.0124	FALSE	0	1	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	ATXN1--PSMB1	1	1	ATXN1	1194	chr6:16761529:-	PSMB1	35935	chr6:170858201:-	ONLY_REF_SPLICE	NO	178	4030	0.01	0	0.0062	0.0062	ATXN1->ataxin_1,chr6:16299343-16761722:-,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CDC42SE2--CTD-2410N18.5	1	1	CDC42SE2	6369	chr5:130651837:+	CTD-2410N18.5	21445	chr5:133509713:-	ONLY_REF_SPLICE	YES	203	16	0.01	0.11	0.0062	0.0062	CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,CTD-2410N18.5->chr5:133502861-133561762:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.11	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CELF1--MTCH2	1	1	CELF1	13174	chr11:47508302:-	MTCH2	41819	chr11:47644328:-	ONLY_REF_SPLICE	YES	318	857	0.01	0	0.0062	0.0062	YOSHIHARA_TCGA_num_samples[BRCA:1|LUSC:1],LOCAL_REARRANGEMENT:-:[51746],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	CNOT6--MGAT1	1	1	CNOT6	3458	chr5:179956388:+	MGAT1	29303	chr5:180220097:-	ONLY_REF_SPLICE	YES	144	650	0.01	0	0.0062	0.0062	GTEx&tcga_normals:1/3694=0.03%,CNOT6->CCR4-NOT_transcription_complex_subunit_6,chr5:179921412-180005405:+,MGAT1->chr5:180217541-180242652:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,2-N-acetylglucosaminyltransferase	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	DDX5--ANP32B	1	1	DDX5	3124	chr17:62502194:-	ANP32B	14917	chr9:100756913:+	ONLY_REF_SPLICE	NO	3228	1923	0	0	0.0062	0.0062	DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	DYNC2H1--DDX10	1	1	DYNC2H1	84560	chr11:103194718:+	DDX10	113297	chr11:108709173:+	ONLY_REF_SPLICE	NO	102	277	0.02	0.01	0.0062	0.0062	DYNC2H1->chr11:102980160-103350591:+,dynein_cytoplasmic_2_heavy_chain_1,DDX10->DEAD-box_helicase_10,Oncogene{Bushman},chr11:108535752-108811657:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	EXOC4--BPGM	1	1	EXOC4	21717	chr7:133314894:+	BPGM	47573	chr7:134363605:+	ONLY_REF_SPLICE	YES	164	173	0.01	0.01	0.0062	0.0062	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	FADS1--CAPN2	1	1	FADS1	7596	chr11:61579943:-	CAPN2	35271	chr1:223946972:+	ONLY_REF_SPLICE	NO	1743	5087	0	0	0.0062	0.0062	FADS1->chr11:61567099-61596790:-,fatty_acid_desaturase_1,CAPN2->calpain_2,chr1:223889295-223963720:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	FKBP8--COPG1	1	1	FKBP8	3399	chr19:18652489:-	COPG1	17965	chr3:128974911:+	ONLY_REF_SPLICE	YES	1334	981	0	0	0.0062	0.0062	GTEx&tcga_normals:1/3694=0.03%,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-,COPG1->chr3:128968449-128996614:+,coatomer_protein_complex_subunit_gamma_1	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	GTF3C2--SNX17	1	1	GTF3C2	13630	chr2:27550904:-	SNX17	22158	chr2:27596728:+	ONLY_REF_SPLICE	YES	319	838	0.01	0	0.0062	0.0062	LOCAL_INVERSION:-:+:[13521],GTF3C2->chr2:27548716-27579868:-,general_transcription_factor_IIIC_subunit_2,SNX17->chr2:27593389-27599995:+,sorting_nexin_17	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	HERC4--C6orf211	1	1	HERC4	15410	chr10:69785303:-	C6orf211	48972	chr6:151789478:+	ONLY_REF_SPLICE	YES	245	263	0.01	0.01	0.0062	0.0062	HERC4->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_4,chr10:69681665-69835105:-,C6orf211->chr6:151773422-151791236:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	HNRNPM--CNPPD1	1	1	HNRNPM	6438	chr19:8530246:+	CNPPD1	23773	chr2:220041569:-	ONLY_REF_SPLICE	YES	2463	125	0	0.02	0.0062	0.0062	HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	IWS1--MEG3	1	1	IWS1	8747	chr2:128260391:-	MEG3	28226	chr14:101295371:+	ONLY_REF_SPLICE	YES	266	1163	0.01	0	0.0062	0.0062	IWS1->IWS1,_SUPT6H_interacting_protein,chr2:128193783-128284462:-,MEG3->Oncogene{Bushman},chr14:101245747-101327368:+,maternally_expressed_3_(non-protein_coding)	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MAML2--MTMR2	1	1	MAML2	5424	chr11:95825056:-	MTMR2	23526	chr11:95598840:-	ONLY_REF_SPLICE	YES	68	292	0.03	0.01	0.0062	0.0062	NEIGHBORS[51283],MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,MTMR2->chr11:95566046-95658479:-,myotubularin_related_protein_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0124	FALSE	0	1	0	3	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MKLN1--CCDC14	1	1	MKLN1	5544	chr7:131012756:+	CCDC14	47580	chr3:123667979:-	ONLY_REF_SPLICE	NO	92	364	0.02	0.01	0.0062	0.0062	MKLN1->chr7:130794855-131181395:+,muskelin_1,CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	MSRB3--HMGA2	1	1	MSRB3	1223	chr12:65672645:+	HMGA2	24116	chr12:66232299:+	ONLY_REF_SPLICE	YES	167	1914	0.01	0	0.0062	0.0062	MSRB3->chr12:65672423-65882024:+,methionine_sulfoxide_reductase_B3,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	NUDCD1--EIF3E	1	1	NUDCD1	3778	chr8:110334538:-	EIF3E	34604	chr8:109241424:-	ONLY_REF_SPLICE	NO	705	4344	0	0	0.0062	0.0062	NUDCD1->NudC_domain_containing_1,chr8:110253148-110346614:-,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PDCD4--SMC3	1	1	PDCD4	2317	chr10:112635828:+	SMC3	34908	chr10:112356156:+	ONLY_REF_SPLICE	YES	381	399	0.01	0	0.0062	0.0062	GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Thyroid=1,Brain_-_Cerebellar_Hemisphere=1},PDCD4->Oncogene{Bushman},chr10:112631565-112659764:+,programmed_cell_death_4_(neoplastic_transformation_inhibitor),SMC3->chr10:112327449-112364394:+,structural_maintenance_of_chromosomes_3	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	1	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	NO	82	0	0.02	1	0.0062	0.0062	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0124	FALSE	56	216	12	147	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	PSMD14--TANK	1	1	PSMD14	3934	chr2:162175384:+	TANK	27436	chr2:162036125:+	ONLY_REF_SPLICE	NO	1773	175	0	0.01	0.0062	0.0062	LOCAL_REARRANGEMENT:+:[71817],PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14,TANK->TRAF_family_member_associated_NFKB_activator,chr2:161993419-162092732:+	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0124	FALSE	0	1	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RHOA--SMARCC1	1	1	RHOA	2179	chr3:49449253:-	SMARCC1	15214	chr3:47814426:-	ONLY_REF_SPLICE	YES	4794	336	0	0.01	0.0062	0.0062	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	NO	0	1	1	0.67	0.0062	0.0062	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.0124	FALSE	81	155	12	160	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	SCN8A--DIP2B	1	1	SCN8A	2094	chr12:51985143:+	DIP2B	43823	chr12:51034507:+	ONLY_REF_SPLICE	YES	13	25	0.13	0.07	0.0062	0.0062	SCN8A->chr12:51984050-52206648:+,sodium_voltage-gated_channel_alpha_subunit_8,DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.07	0.13	0.0124	TRUE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	SEC23A--EPB41L2	1	1	SEC23A	12029	chr14:39554966:-	EPB41L2	64704	chr6:131188721:-	ONLY_REF_SPLICE	NO	854	1307	0	0	0.0062	0.0062	SEC23A->Sec23_homolog_A,_coat_complex_II_component,chr14:39501123-39578850:-,EPB41L2->chr6:131160487-131384462:-,erythrocyte_membrane_protein_band_4.1_like_2	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	STRN--CRIM1	1	1	STRN	3421	chr2:37143221:-	CRIM1	48657	chr2:36764495:+	ONLY_REF_SPLICE	YES	102	420	0.02	0	0.0062	0.0062	STRN->Oncogene{Bushman},chr2:37070783-37193615:-,striatin,CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like)	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0062	0.0062	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CH157MN_CENTRAL_NERVOUS_SYSTEM	1	1	0.0124	TRUE	62	24	1	171	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	TIMM9--PSMA3	1	1	TIMM9	5100	chr14:58877561:-	PSMA3	16595	chr14:58730423:+	ONLY_REF_SPLICE	YES	570	2033	0	0	0.0062	0.0062	TIMM9->chr14:58875212-58894332:-,translocase_of_inner_mitochondrial_membrane_9,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	VDAC1--CTD-2410N18.5	1	1	VDAC1	1487	chr5:133340338:-	CTD-2410N18.5	16152	chr5:133509713:-	ONLY_REF_SPLICE	YES	431	16	0	0.11	0.0062	0.0062	VDAC1->chr5:133307606-133340824:-,voltage_dependent_anion_channel_1,CTD-2410N18.5->chr5:133502861-133561762:-	CH157MN_CENTRAL_NERVOUS_SYSTEM	0	0.11	0.0124	FALSE	0	0	0	6	0	FALSE	ACH-000025
CH157MN_CENTRAL_NERVOUS_SYSTEM	VPS13B--STK3	1	1	VPS13B	22917	chr8:100287482:+	STK3	108959	chr8:99539145:-	ONLY_REF_SPLICE	YES	24	247	0.08	0.01	0.0062	0.0062	GTEx&tcga_normals:3/3694=0.08%,GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Whole_Blood=1},LOCAL_INVERSION:+:-:[70439],VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast),STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3	CH157MN_CENTRAL_NERVOUS_SYSTEM	0.01	0.08	0.0124	FALSE	0	0	0	1	0	FALSE	ACH-000025
SKMEL3_SKIN	FTO--RSPRY1	224	3	FTO	1267	chr16:53738141:+	RSPRY1	48234	chr16:57269036:+	ONLY_REF_SPLICE	YES	2	13	0.99	0.95	2.2797	0.0305	FTO->chr16:53737875-54155853:+,fat_mass_and_obesity_associated,RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1	SKMEL3_SKIN	0.95	0.99	2.3102	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TN	145	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4757	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMEL3_SKIN	1	1	1.4757	FALSE	369	2501	205	193	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TC	82	19	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8345	0.1934	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL3_SKIN	1	1	1.0279	FALSE	462	80	0	856	0	FALSE	ACH-000423
SKMEL3_SKIN	TIMM23B--LINC00843	74	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7531	0.1527	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKMEL3_SKIN	1	1	0.9058	TRUE	508	994	45	981	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND4--MT-ND4L	4	203	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	16	1	0.93	1	0.0407	2.066	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL3_SKIN	0.93	1	2.1067	FALSE	344	826	44	306	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND6--MT-TE	47	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4783	0.0611	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL3_SKIN	1	1	0.5394	FALSE	499	1288	110	792	0	FALSE	ACH-000423
SKMEL3_SKIN	TUBGCP5--MKRN3	42	22	TUBGCP5	13966	chr15:22855295:+	MKRN3	31271	chr15:23820493:+	ONLY_REF_SPLICE	YES	77	0	0.45	1	0.4275	0.2239	TUBGCP5->chr15:22833395-22873892:+,tubulin_gamma_complex_associated_protein_5,MKRN3->Oncogene{Bushman},chr15:23810454-23873064:+,makorin_ring_finger_protein_3	SKMEL3_SKIN	0.45	1	0.6514	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	MT-ND4--MT-ND4L	13	135	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	5257	0	0.03	1	0.1323	1.3739	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL3_SKIN	0.03	1	1.5062	FALSE	344	827	44	306	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND4--MT-ND4L	7	151	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	7	4	0.96	0.98	0.0712	1.5368	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL3_SKIN	0.96	0.98	1.608	FALSE	344	821	44	306	0	FALSE	ACH-000423
SKMEL3_SKIN	TIMM23--RP11-464F9.1	42	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	87	0	0.35	1	0.4275	0.0509	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKMEL3_SKIN	0.35	1	0.4784	TRUE	519	3926	326	965	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND4--MT-ND4L	3	131	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	41	0	0.77	1	0.0305	1.3332	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL3_SKIN	0.77	1	1.3637	FALSE	344	827	44	306	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TN	13	79	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1323	0.804	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMEL3_SKIN	1	1	0.9363	FALSE	369	2501	205	193	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TN	20	46	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2035	0.4682	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMEL3_SKIN	1	1	0.6717	FALSE	369	2501	205	193	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND6--MT-TE	21	28	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.2137	0.285	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL3_SKIN	0.89	1	0.4987	FALSE	499	1288	110	792	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TN	13	59	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1323	0.6005	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMEL3_SKIN	1	1	0.7328	FALSE	369	2501	205	193	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND6--MT-TE	24	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2443	0.0814	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL3_SKIN	1	1	0.3257	FALSE	499	1288	110	792	0	FALSE	ACH-000423
SKMEL3_SKIN	TTYH3--MAD1L1	23	1	TTYH3	1328	chr7:2671912:+	MAD1L1	58511	chr7:1855864:-	ONLY_REF_SPLICE	YES	174	262	0.12	0.08	0.2341	0.0102	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.08	0.12	0.2443	TRUE	0	7	0	2	1	FALSE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TN	17	23	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.173	0.2341	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMEL3_SKIN	1	1	0.4071	FALSE	369	2501	205	193	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND4--MT-ND4L	13	27	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	24	0	0.62	1	0.1323	0.2748	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL3_SKIN	0.62	1	0.4071	FALSE	344	826	44	306	0	FALSE	ACH-000423
SKMEL3_SKIN	C15orf57--CBX3	16	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	47	56	0.38	0.34	0.1628	0.1323	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKMEL3_SKIN	0.34	0.38	0.2951	TRUE	267	562	48	632	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND6--MT-TE	10	31	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1018	0.3155	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL3_SKIN	1	1	0.4173	FALSE	499	1288	110	792	0	FALSE	ACH-000423
SKMEL3_SKIN	HSP90AB1--MT-RNR2	16	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1628	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL3_SKIN	1	1	0.1628	FALSE	13	9	0	364	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TC	12	16	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1221	0.1628	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL3_SKIN	1	1	0.2849	FALSE	462	80	0	856	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TN	16	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1628	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMEL3_SKIN	1	1	0.1628	FALSE	369	2501	205	193	0	FALSE	ACH-000423
SKMEL3_SKIN	HSP90AB1--MT-RNR2	14	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1425	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL3_SKIN	1	1	0.1425	FALSE	13	9	0	364	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND4--MT-ND4L	7	28	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	303	0	0.1	1	0.0712	0.285	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL3_SKIN	0.1	1	0.3562	FALSE	344	827	44	306	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TN	7	26	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0712	0.2646	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMEL3_SKIN	1	1	0.3358	FALSE	369	2501	205	193	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND6--MT-TE	3	40	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	6	0	0.88	1	0.0305	0.4071	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL3_SKIN	0.88	1	0.4376	FALSE	499	1288	110	792	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND4--MT-ND4L	4	33	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	6	0	0.86	1	0.0407	0.3359	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL3_SKIN	0.86	1	0.3766	FALSE	344	821	44	306	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TN	12	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1221	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMEL3_SKIN	1	1	0.1221	FALSE	369	2501	205	193	0	FALSE	ACH-000423
SKMEL3_SKIN	BNIP2--GCOM1	10	6	BNIP2	13044	chr15:59956272:-	GCOM1	32218	chr15:57938335:+	INCL_NON_REF_SPLICE	YES	183	4	0.08	0.8	0.1018	0.0611	BNIP2->BCL2/adenovirus_E1B_19kDa_interacting_protein_2,chr15:59951345-59981733:-,GCOM1->GRINL1A_complex_locus_1,chr15:57884106-58006943:+	SKMEL3_SKIN	0.08	0.8	0.1629	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TC	11	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.112	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL3_SKIN	1	1	0.112	FALSE	462	80	0	856	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TC	5	21	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0.2137	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL3_SKIN	1	1	0.2646	FALSE	462	80	0	856	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND6--MT-TE	10	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1018	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL3_SKIN	1	1	0.1018	FALSE	499	1288	110	792	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND4--MT-ND4L	3	27	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	27	0	0.53	1	0.0305	0.2748	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL3_SKIN	0.53	1	0.3053	FALSE	344	826	44	306	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-CO2	9	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	59	2	0.16	0.85	0.0916	0.0204	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL3_SKIN	0.16	0.85	0.112	FALSE	59	21	0	114	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-RNR2	9	1	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	11088	9097	0	0	0.0916	0.0102	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL3_SKIN	0	0	0.1018	FALSE	63	17	1	58	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND4--MT-ND4L	6	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	34	0	0.36	1	0.0611	0.1323	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL3_SKIN	0.36	1	0.1934	FALSE	344	827	44	306	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-CO1	9	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0916	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL3_SKIN	1	1	0.0916	FALSE	183	104	9	328	0	FALSE	ACH-000423
SKMEL3_SKIN	TTYH3--MAD1L1	8	2	TTYH3	1328	chr7:2671912:+	MAD1L1	53732	chr7:1938026:-	ONLY_REF_SPLICE	YES	174	280	0.05	0.03	0.0814	0.0204	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.03	0.05	0.1018	TRUE	0	6	0	2	1	FALSE	ACH-000423
SKMEL3_SKIN	MAD1L1--TTYH3	7	4	MAD1L1	35008	chr7:1937836:-	TTYH3	45682	chr7:2686487:+	ONLY_REF_SPLICE	YES	262	190	0.04	0.05	0.0712	0.0407	{Klijn_CCL:Skin=1},MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,TTYH3->chr7:2671585-2704436:+,tweety_family_member_3	SKMEL3_SKIN	0.04	0.05	0.1119	TRUE	0	3	0	1	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND4--MT-ND4L	7	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.91	0.0712	0.0305	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL3_SKIN	0.91	1	0.1017	FALSE	344	821	44	306	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-RNR2	7	1	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	10663	8797	0	0	0.0712	0.0102	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL3_SKIN	0	0	0.0814	FALSE	63	17	1	58	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND4--MT-ND4L	4	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	24	0	0.41	1	0.0407	0.1323	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL3_SKIN	0.41	1	0.173	FALSE	344	826	44	306	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-CO2	6	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	59	2	0.12	0.8	0.0611	0.0204	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL3_SKIN	0.12	0.8	0.0815	FALSE	59	21	0	114	0	FALSE	ACH-000423
SKMEL3_SKIN	BANP--SLC7A5	6	1	BANP	21949	chr16:88052273:+	SLC7A5	39052	chr16:87874761:-	ONLY_REF_SPLICE	YES	65	347	0.1	0.02	0.0611	0.0102	{Klijn_CCL:Skin=1},LOCAL_INVERSION:+:-:[79756],BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	SKMEL3_SKIN	0.02	0.1	0.0713	TRUE	0	1	0	1	0	FALSE	ACH-000423
SKMEL3_SKIN	RP11-444D3.1--SOX5	6	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	15	1	0.32	0.0611	0.0102	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL3_SKIN	0.32	1	0.0713	TRUE	477	1352	189	275	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-RNR2	6	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL3_SKIN	1	1	0.0611	FALSE	63	17	1	58	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND6--MT-TE	6	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL3_SKIN	1	1	0.0611	FALSE	499	1288	110	792	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TN	6	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMEL3_SKIN	1	1	0.0611	FALSE	369	2501	205	193	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TN	6	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMEL3_SKIN	1	1	0.0611	FALSE	369	2501	205	193	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TN	6	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMEL3_SKIN	1	1	0.0611	FALSE	369	2501	205	193	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TN	3	11	MT-TA	1071	chrM:5585:-	MT-TN	4113	chrM:5686:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0.112	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMEL3_SKIN	1	1	0.1425	FALSE	369	2501	205	193	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-CO1	4	6	MT-ATP6	1516	chrM:9042:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	NO	5720	22837	0	0	0.0407	0.0611	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL3_SKIN	0	0	0.1018	FALSE	183	104	9	328	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-CO2	4	6	MT-ATP6	1555	chrM:9081:+	MT-CO2	4955	chrM:7859:+	INCL_NON_REF_SPLICE	YES	2	3	0.83	0.77	0.0407	0.0611	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL3_SKIN	0.77	0.83	0.1018	FALSE	59	21	0	114	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TC	4	6	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0.0611	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMEL3_SKIN	1	1	0.1018	FALSE	462	80	0	856	0	FALSE	ACH-000423
SKMEL3_SKIN	C15orf57--CBX3	3	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	46	57	0.21	0.17	0.0305	0.0916	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKMEL3_SKIN	0.17	0.21	0.1221	TRUE	267	562	48	632	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-CO2	5	1	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	56	2	0.1	0.75	0.0509	0.0102	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL3_SKIN	0.1	0.75	0.0611	FALSE	59	21	0	114	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	11088	0	0	1	0.0509	0.0102	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL3_SKIN	0	1	0.0611	FALSE	63	17	1	58	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-CO1	4	4	MT-ATP6	1413	chrM:8939:+	MT-CO1	5362	chrM:6584:+	INCL_NON_REF_SPLICE	YES	10980	23070	0	0	0.0407	0.0407	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL3_SKIN	0	0	0.0814	FALSE	183	104	9	328	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL3_SKIN	1	1	0.0509	FALSE	63	17	1	58	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMEL3_SKIN	1	1	0.0509	FALSE	351	233	23	137	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND4--MT-ND4L	5	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMEL3_SKIN	1	1	0.0509	FALSE	344	821	44	306	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-TA--MT-TN	5	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0509	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMEL3_SKIN	1	1	0.0509	FALSE	369	2501	205	193	0	FALSE	ACH-000423
SKMEL3_SKIN	TTYH3--C7orf50	4	3	TTYH3	1328	chr7:2671912:+	C7orf50	29781	chr7:1049779:-	ONLY_REF_SPLICE	YES	174	230	0.04	0.03	0.0407	0.0305	{Klijn_CCL:Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	SKMEL3_SKIN	0.03	0.04	0.0712	TRUE	0	1	0	1	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-CO1	3	6	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3224	22837	0	0	0.0305	0.0611	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL3_SKIN	0	0	0.0916	FALSE	183	104	9	328	0	FALSE	ACH-000423
SKMEL3_SKIN	ATP10A--KIAA0125P2	4	1	ATP10A	3232	chr15:26107795:-	KIAA0125P2	33065	chr15:21225741:+	ONLY_REF_SPLICE	YES	15	0	0.25	1	0.0407	0.0102	ATP10A->ATPase_phospholipid_transporting_10A_(putative),chr15:25922420-26110317:-,KIAA0125P2->KIAA0125_pseudogene_2,chr15:21224717-21226180:+	SKMEL3_SKIN	0.25	1	0.0509	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	KCNAB2--ACOT7	4	1	KCNAB2	11901	chr1:6100705:+	ACOT7	54236	chr1:6324755:-	ONLY_REF_SPLICE	YES	100	381	0.05	0.01	0.0407	0.0102	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-	SKMEL3_SKIN	0.01	0.05	0.0509	FALSE	0	2	0	3	0	FALSE	ACH-000423
SKMEL3_SKIN	MAD1L1--C7orf50	4	1	MAD1L1	35008	chr7:1937836:-	C7orf50	52899	chr7:1049779:-	ONLY_REF_SPLICE	YES	262	230	0.02	0.02	0.0407	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	SKMEL3_SKIN	0.02	0.02	0.0509	TRUE	0	3	0	2	0	FALSE	ACH-000423
SKMEL3_SKIN	TTYH3--ASPSCR1	4	1	TTYH3	1328	chr7:2671912:+	ASPSCR1	34222	chr17:79966913:+	ONLY_REF_SPLICE	YES	174	52	0.03	0.09	0.0407	0.0102	TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,ASPSCR1->Oncogene{Bushman},alveolar_soft_part_sarcoma_chromosome_region,_candidate_1,chr17:79934683-79975282:+	SKMEL3_SKIN	0.03	0.09	0.0509	TRUE	0	1	0	1	0	FALSE	ACH-000423
SKMEL3_SKIN	KCNAB2--ACOT7	3	4	KCNAB2	11901	chr1:6100705:+	ACOT7	42908	chr1:6409926:-	ONLY_REF_SPLICE	YES	100	593	0.07	0.01	0.0305	0.0407	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-	SKMEL3_SKIN	0.01	0.07	0.0712	FALSE	0	2	0	2	0	FALSE	ACH-000423
SKMEL3_SKIN	NAA38--SSU72	4	0	NAA38	1223	chr7:117824308:+	SSU72	17660	chr1:1480382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	NAA38->N(alpha)-acetyltransferase_38,_NatC_auxiliary_subunit,chr7:117824086-117832878:+,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	SKMEL3_SKIN	1	1	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-CO2	3	3	MT-ATP6	1620	chrM:9146:+	MT-CO2	5236	chrM:8140:+	INCL_NON_REF_SPLICE	NO	0	3	1	0.67	0.0305	0.0305	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL3_SKIN	0.67	1	0.061	FALSE	59	21	0	114	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-CO2	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	59	2	0.08	0.71	0.0305	0.0204	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL3_SKIN	0.08	0.71	0.0509	FALSE	59	21	0	114	0	FALSE	ACH-000423
SKMEL3_SKIN	TTYH3--MAD1L1	2	6	TTYH3	1328	chr7:2671912:+	MAD1L1	45286	chr7:2108973:-	ONLY_REF_SPLICE	YES	174	31	0.04	0.21	0.0204	0.0611	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.04	0.21	0.0815	TRUE	0	1	0	1	1	TRUE	ACH-000423
SKMEL3_SKIN	BAIAP2--SLC38A10	3	1	BAIAP2	6850	chr17:79031767:+	SLC38A10	47436	chr17:79227040:-	ONLY_REF_SPLICE	YES	71	239	0.05	0.02	0.0305	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},{Klijn_CCL:Ovary=1},BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+,SLC38A10->chr17:79218800-79269347:-,solute_carrier_family_38_member_10	SKMEL3_SKIN	0.02	0.05	0.0407	TRUE	0	0	0	1	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11519	22334	0	0	0.0305	0.0102	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKMEL3_SKIN	0	0	0.0407	FALSE	183	104	9	328	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	10653	8837	0	0	0.0305	0.0102	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMEL3_SKIN	0	0	0.0407	FALSE	63	17	1	58	0	FALSE	ACH-000423
SKMEL3_SKIN	ACSF3--SLC7A5	3	0	ACSF3	2292	chr16:89160404:+	SLC7A5	34149	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	ACSF3->acyl-CoA_synthetase_family_member_3,chr16:89154783-89222254:+,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	SKMEL3_SKIN	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	CNIH4--SSU72	3	0	CNIH4	1144	chr1:224544695:+	SSU72	20548	chr1:1480382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	CNIH4->chr1:224544552-224567161:+,cornichon_family_AMPA_receptor_auxiliary_protein_4,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	SKMEL3_SKIN	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	LIMK1--MT-ND4	3	0	LIMK1	19532	chr7:73536490:+	MT-ND4	23364	chrM:11226:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	LIMK1->LIM_domain_kinase_1,Oncogene{Bushman},chr7:73497263-73536855:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SKMEL3_SKIN	1	1	0.0305	FALSE	0	0	0	2	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-CO2	3	0	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL3_SKIN	1	1	0.0305	FALSE	59	21	0	114	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-CO2	3	0	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL3_SKIN	1	1	0.0305	FALSE	59	21	0	114	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ATP6--MT-CO2	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMEL3_SKIN	1	1	0.0305	FALSE	59	21	0	114	0	FALSE	ACH-000423
SKMEL3_SKIN	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMEL3_SKIN	1	1	0.0305	FALSE	499	1288	110	792	0	FALSE	ACH-000423
SKMEL3_SKIN	PMEL--GPNMB	3	0	PMEL	7895	chr12:56351790:-	GPNMB	24477	chr7:23299678:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	PROTCLUST,PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein,GPNMB->Oncogene{Bushman},chr7:23275586-23314727:+,glycoprotein_nmb	SKMEL3_SKIN	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	TTYH3--MAD1L1	2	4	TTYH3	1328	chr7:2671912:+	MAD1L1	46431	chr7:2054277:-	ONLY_REF_SPLICE	YES	174	33	0.03	0.15	0.0204	0.0407	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.03	0.15	0.0611	TRUE	0	4	0	2	2	TRUE	ACH-000423
SKMEL3_SKIN	ZC3H3--PLEC	3	0	ZC3H3	4593	chr8:144618427:-	PLEC	30122	chr8:145012860:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	ZC3H3->chr8:144519825-144623623:-,zinc_finger_CCCH-type_containing_3,PLEC->chr8:144989321-145050902:-,plectin	SKMEL3_SKIN	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	C7orf50--MAD1L1	1	7	C7orf50	6340	chr7:1067894:-	MAD1L1	42333	chr7:2108973:-	ONLY_REF_SPLICE	YES	159	31	0.05	0.21	0.0102	0.0712	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.05	0.21	0.0814	TRUE	0	0	0	3	0	TRUE	ACH-000423
SKMEL3_SKIN	C7orf50--MAD1L1	1	7	C7orf50	6340	chr7:1067894:-	MAD1L1	50779	chr7:1938026:-	ONLY_REF_SPLICE	YES	159	280	0.05	0.03	0.0102	0.0712	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.03	0.05	0.0814	TRUE	0	1	0	1	0	FALSE	ACH-000423
SKMEL3_SKIN	TTYH3--MAD1L1	2	3	TTYH3	10024	chr7:2696168:+	MAD1L1	53732	chr7:1938026:-	ONLY_REF_SPLICE	YES	544	280	0.01	0.02	0.0204	0.0305	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.01	0.02	0.0509	FALSE	0	1	0	1	0	FALSE	ACH-000423
SKMEL3_SKIN	C7orf50--MAD1L1	1	6	C7orf50	3078	chr7:1166893:-	MAD1L1	44619	chr7:2041756:-	ONLY_REF_SPLICE	YES	140	39	0.05	0.15	0.0102	0.0611	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.05	0.15	0.0713	TRUE	0	0	0	2	0	TRUE	ACH-000423
SKMEL3_SKIN	C7orf50--MAD1L1	1	6	C7orf50	3078	chr7:1166893:-	MAD1L1	50779	chr7:1938026:-	ONLY_REF_SPLICE	YES	140	280	0.05	0.02	0.0102	0.0611	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.02	0.05	0.0713	TRUE	0	1	0	6	0	FALSE	ACH-000423
SKMEL3_SKIN	KCNAB2--ACOT7	2	2	KCNAB2	11901	chr1:6100705:+	ACOT7	50769	chr1:6355040:-	ONLY_REF_SPLICE	YES	100	413	0.04	0.01	0.0204	0.0204	KCNAB2->chr1:6051526-6161253:+,potassium_voltage-gated_channel_subfamily_A_regulatory_beta_subunit_2,ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-	SKMEL3_SKIN	0.01	0.04	0.0408	FALSE	0	0	0	1	0	FALSE	ACH-000423
SKMEL3_SKIN	BANP--SLC7A5	2	1	BANP	16383	chr16:88017865:+	SLC7A5	39052	chr16:87874761:-	ONLY_REF_SPLICE	YES	58	347	0.05	0.01	0.0204	0.0102	{Klijn_CCL:Skin=1},LOCAL_INVERSION:+:-:[79756],BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	SKMEL3_SKIN	0.01	0.05	0.0306	FALSE	0	0	0	1	0	FALSE	ACH-000423
SKMEL3_SKIN	C7orf50--MAD1L1	1	5	C7orf50	3078	chr7:1166893:-	MAD1L1	55558	chr7:1855864:-	ONLY_REF_SPLICE	YES	140	262	0.04	0.02	0.0102	0.0509	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.02	0.04	0.0611	TRUE	0	4	0	5	2	TRUE	ACH-000423
SKMEL3_SKIN	AC096559.1--TBCA	2	0	AC096559.1	12507	chr2:12454531:+	TBCA	25193	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	AC096559.1->chr2:11988748-12718474:+,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	CCAT1--CASC8	2	0	CCAT1	1279	chr8:128231055:-	CASC8	12971	chr8:128433208:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SKMEL3_SKIN	1	1	0.0204	TRUE	0	7	0	7	7	TRUE	ACH-000423
SKMEL3_SKIN	CSNK1G2--BTBD2	2	0	CSNK1G2	1230	chr19:1941417:+	BTBD2	22552	chr19:1997462:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_INVERSION:+:-:[4110],CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,BTBD2->BTB_domain_containing_2,chr19:1985447-2034880:-	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	3	0	TRUE	ACH-000423
SKMEL3_SKIN	FAM222A-AS1--GIT2	2	0	FAM222A-AS1	1212	chr12:110211102:-	GIT2	32780	chr12:110376373:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	FAM222A-AS1->FAM222A_antisense_RNA_1,chr12:110171971-110211313:-,GIT2->GIT_ArfGAP_2,chr12:110367607-110434194:-	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	KCNQ5-IT1--KCNQ5	2	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	SKMEL3_SKIN	1	1	0.0204	FALSE	1	11	0	34	0	FALSE	ACH-000423
SKMEL3_SKIN	MAD1L1--C7orf50	2	0	MAD1L1	19401	chr7:2188787:-	C7orf50	52899	chr7:1049779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	MBNL1--ATP1B3	2	0	MBNL1	3666	chr3:151986881:+	ATP1B3	31553	chr3:141622462:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,ATP1B3->ATPase_Na+/K+_transporting_subunit_beta_3,chr3:141594966-141645356:+	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	PAPOLA--WARS	2	0	PAPOLA	2168	chr14:96968937:+	WARS	43863	chr14:100820903:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,WARS->chr14:100800125-100843142:-,tryptophanyl-tRNA_synthetase	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	RP11-634B7.4--TRIM58	2	0	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	SKMEL3_SKIN	1	1	0.0204	TRUE	158	633	76	73	0	FALSE	ACH-000423
SKMEL3_SKIN	RPL22--KHDRBS1	2	0	RPL22	7028	chr1:6257712:-	KHDRBS1	17846	chr1:32497125:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	RPL22->Oncogene{Bushman},chr1:6241329-6269449:-,ribosomal_protein_L22,KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	ZFPM1--GSE1	2	0	ZFPM1	3590	chr16:88555561:+	GSE1	21364	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ZFPM1->chr16:88519725-88603424:+,zinc_finger_protein,_FOG_family_member_1,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	ZFPM1--SLC7A5	2	0	ZFPM1	3590	chr16:88555561:+	SLC7A5	21560	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	{Klijn_CCL:Skin=1},ZFPM1->chr16:88519725-88603424:+,zinc_finger_protein,_FOG_family_member_1,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	SKMEL3_SKIN	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	TTYH3--MAD1L1	1	3	TTYH3	1328	chr7:2671912:+	MAD1L1	52521	chr7:1976533:-	ONLY_REF_SPLICE	NO	174	193	0.02	0.02	0.0102	0.0305	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.02	0.02	0.0407	TRUE	0	4	0	1	1	FALSE	ACH-000423
SKMEL3_SKIN	TTYH3--MAD1L1	1	3	TTYH3	1328	chr7:2671912:+	MAD1L1	47572	chr7:2041756:-	ONLY_REF_SPLICE	YES	174	39	0.02	0.09	0.0102	0.0305	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0.02	0.09	0.0407	TRUE	0	4	0	1	2	TRUE	ACH-000423
SKMEL3_SKIN	AGO1--GNAL	1	1	AGO1	2334	chr1:36349047:+	GNAL	39212	chr18:11862394:+	ONLY_REF_SPLICE	YES	17	14	0.11	0.12	0.0102	0.0102	AGO1->argonaute_1,_RISC_catalytic_component,chr1:36335409-36395211:+,GNAL->G_protein_subunit_alpha_L,chr18:11688955-11885684:+	SKMEL3_SKIN	0.11	0.12	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000423
SKMEL3_SKIN	BAIAP2--SLC38A10	1	1	BAIAP2	6850	chr17:79031767:+	SLC38A10	36576	chr17:79258695:-	ONLY_REF_SPLICE	NO	71	106	0.03	0.02	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},{Klijn_CCL:Ovary=1},BAIAP2->BAI1_associated_protein_2,chr17:79008948-79091232:+,SLC38A10->chr17:79218800-79269347:-,solute_carrier_family_38_member_10	SKMEL3_SKIN	0.02	0.03	0.0204	TRUE	0	0	0	2	0	FALSE	ACH-000423
SKMEL3_SKIN	MAD1L1--C7orf50	1	1	MAD1L1	31144	chr7:1997264:-	C7orf50	52899	chr7:1049779:-	ONLY_REF_SPLICE	NO	28	230	0.07	0.01	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	SKMEL3_SKIN	0.01	0.07	0.0204	FALSE	0	2	0	1	0	FALSE	ACH-000423
SKMEL3_SKIN	PRKCZ--SKI	1	1	PRKCZ	4727	chr1:1991030:+	SKI	40556	chr1:2234417:+	ONLY_REF_SPLICE	YES	2	40	0.5	0.05	0.0102	0.0102	GTEx&tcga_normals:6/3694=0.16%,NEIGHBORS[43300],PRKCZ->chr1:1981909-2116834:+,protein_kinase_C_zeta,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	SKMEL3_SKIN	0.05	0.5	0.0204	FALSE	2	3	0	2	0	FALSE	ACH-000423
SKMEL3_SKIN	PSPH--CCT6A	1	1	PSPH	1467	chr7:56118831:-	CCT6A	17085	chr7:56122062:+	ONLY_REF_SPLICE	NO	91	1556	0.02	0	0.0102	0.0102	LOCAL_INVERSION:-:+:[26],PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	SKMEL3_SKIN	0	0.02	0.0204	FALSE	0	0	0	2	0	FALSE	ACH-000423
SKMEL3_SKIN	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	20	1	0.09	0.0102	0.0102	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SKMEL3_SKIN	0.09	1	0.0204	TRUE	160	277	29	98	0	FALSE	ACH-000423
SKMEL3_SKIN	TTYH3--MAD1L1	1	1	TTYH3	10024	chr7:2696168:+	MAD1L1	58511	chr7:1855864:-	ONLY_REF_SPLICE	YES	544	262	0	0.01	0.0102	0.0102	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SKMEL3_SKIN	0	0.01	0.0204	FALSE	0	1	0	2	0	FALSE	ACH-000423
SKMEL3_SKIN	TYR--MXI1	1	1	TYR	3538	chr11:88924586:+	MXI1	17518	chr10:111987947:+	ONLY_REF_SPLICE	YES	454	74	0	0.03	0.0102	0.0102	TYR->chr11:88910620-89028927:+,tyrosinase,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	SKMEL3_SKIN	0	0.03	0.0204	FALSE	0	4	0	4	0	FALSE	ACH-000423
SKMEL3_SKIN	UVSSA--CTBP1	1	1	UVSSA	8854	chr4:1360219:+	CTBP1	25235	chr4:1232125:-	ONLY_REF_SPLICE	NO	12	144	0.14	0.01	0.0102	0.0102	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SKMEL3_SKIN	0.01	0.14	0.0204	FALSE	1	0	0	4	0	FALSE	ACH-000423
SKMEL3_SKIN	UVSSA--CTBP1	1	1	UVSSA	7499	chr4:1349033:+	CTBP1	32260	chr4:1222131:-	ONLY_REF_SPLICE	NO	13	144	0.13	0.01	0.0102	0.0102	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SKMEL3_SKIN	0.01	0.13	0.0204	FALSE	3	2	0	5	0	FALSE	ACH-000423
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	157	70	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	32	46	0.88	0.83	1.8537	0.8265	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.88	2.6802	TRUE	181	1564	124	196	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DYRK1A--BCL7A	87	18	DYRK1A	7496	chr21:38792686:+	BCL7A	36977	chr12:122492711:+	ONLY_REF_SPLICE	YES	4	46	0.96	0.7	1.0272	0.2125	DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A,BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.96	1.2397	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	66	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7793	0.248	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0273	TRUE	508	994	45	981	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL7A--DYRK1A	58	28	BCL7A	7109	chr12:122481959:+	DYRK1A	24193	chr21:38844986:+	ONLY_REF_SPLICE	YES	55	5	0.61	0.95	0.6848	0.3306	BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+,DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.95	1.0154	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	53	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6258	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6258	TRUE	0	0	0	518	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YTHDF1--KCNQ2	34	14	YTHDF1	6415	chr20:61833639:-	KCNQ2	30176	chr20:62039889:-	ONLY_REF_SPLICE	YES	64	0	0.43	1	0.4014	0.1653	YTHDF1->YTH_N6-methyladenosine_RNA_binding_protein_1,chr20:61826781-61847586:-,KCNQ2->chr20:62037542-62103993:-,potassium_voltage-gated_channel_subfamily_Q_member_2	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.5667	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	32	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	149	4	0.18	0.89	0.3778	0.0118	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.89	0.3896	TRUE	519	3926	326	965	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTF3C5--PSAP	22	0	GTF3C5	11957	chr9:135933494:+	PSAP	23931	chr10:73580083:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2598	0	GTF3C5->chr9:135906076-135933890:+,general_transcription_factor_IIIC_subunit_5,PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2598	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASAP1--FAM49B	19	7	ASAP1	7774	chr8:131370263:-	FAM49B	54419	chr8:130916831:-	ONLY_REF_SPLICE	YES	3	141	0.9	0.16	0.2243	0.0827	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.9	0.307	FALSE	0	1	0	2	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	12	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1417	0.0708	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2125	TRUE	477	1352	189	275	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	13	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1535	0.0118	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1653	FALSE	416	2512	207	587	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	13	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1535	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1535	FALSE	462	80	0	856	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	9	0	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1063	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1063	FALSE	231	217	16	283	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DYRK1A--BCL7A	7	2	DYRK1A	2839	chr21:38739930:+	BCL7A	36977	chr12:122492711:+	ONLY_REF_SPLICE	YES	0	46	1	0.16	0.0827	0.0236	DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A,BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.1063	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC073342.12--KEL	6	0	AC073342.12	3786	chr7:142952392:-	KEL	6939	chr7:142659651:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0708	0	GTEx_FI:{Brain=[count:3=pct:0.5]},AC073342.12->chr7:142952357-142984473:-,KEL->ArcherDX_panel,FoundationOne_panel,Kell_blood_group,_metallo-endopeptidase,chr7:142638201-142659768:-	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0708	TRUE	2	0	0	3	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRBV5-3--TRBJ2-5	5	2	TRBV5-3	1474	chr7:142242274:-	TRBJ2-5	4478	chr7:142494813:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.059	0.0236	HGNC_GENEFAM,TRBV5-3->T_cell_receptor_beta_variable_5-3_(non-functional),chr7:142242281-142242747:-,TRBJ2-5->T_cell_receptor_beta_joining_2-5,chr7:142494803-142494850:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0826	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	0	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.059	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.059	FALSE	231	217	16	283	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	5	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.059	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.059	TRUE	46	1352	75	139	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	5	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.059	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.059	FALSE	16	356	14	466	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	4	3	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	NO	1790	0	0	1	0.0472	0.0354	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0826	FALSE	0	1	0	48	1	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASAP1--FAM49B	4	2	ASAP1	7774	chr8:131370263:-	FAM49B	55506	chr8:130915596:-	ONLY_REF_SPLICE	YES	3	117	0.67	0.05	0.0472	0.0236	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.67	0.0708	FALSE	0	0	0	2	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	4	2	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	NO	1848	0	0	1	0.0472	0.0236	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0708	FALSE	0	1	0	48	1	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0472	FALSE	183	104	9	328	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0472	FALSE	63	17	1	58	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0472	FALSE	231	217	16	283	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0472	TRUE	0	0	0	434	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0472	TRUE	0	0	0	434	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UVSSA--CTBP1	4	0	UVSSA	7499	chr4:1349033:+	CTBP1	24040	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0472	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0472	TRUE	23	5	0	14	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	1279	8489	0	0	0.0354	0.0118	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0472	FALSE	183	104	9	328	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	4625	0	0	1	0.0354	0.0118	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0472	FALSE	63	17	1	58	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	3	1	XXbac-BPG252P9.9	1179	chr6:30691476:-	TUBBP2	4914	chr13:41959179:-	INCL_NON_REF_SPLICE	NO	1859	0	0	1	0.0354	0.0118	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0472	FALSE	0	1	0	48	1	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf25--DAZAP1	3	0	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	6	7	1	24	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EPB41--YTHDF2	3	0	EPB41	20868	chr1:29391670:+	YTHDF2	41708	chr1:29095441:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	EPB41->chr1:29213603-29446553:+,erythrocyte_membrane_protein_band_4.1,YTHDF2->YTH_N6-methyladenosine_RNA_binding_protein_2,chr1:29063133-29096287:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HMGA1--HNRNPH1	3	0	HMGA1	7773	chr6:34213782:+	HNRNPH1	18220	chr5:179046343:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	HMGA1->Oncogene{Bushman},chr6:34204650-34214008:+,high_mobility_group_AT-hook_1,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HMOX2--TDP1	3	0	HMOX2	2722	chr16:4526488:+	TDP1	37827	chr14:90485660:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	HMOX2->chr16:4524691-4560348:+,heme_oxygenase_2,TDP1->chr14:90421283-90511106:+,tyrosyl-DNA_phosphodiesterase_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INVS--TMEFF1	3	0	INVS	5175	chr9:102888831:+	TMEFF1	32532	chr9:103261047:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	INVS->chr9:102861538-103063282:+,inversin,TMEFF1->chr9:103204560-103339918:+,transmembrane_protein_with_EGF_like_and_two_follistatin_like_domains_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MRPS5--SECISBP2	3	0	MRPS5	6144	chr2:95775679:-	SECISBP2	44774	chr9:91973665:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	MRPS5->chr2:95752952-95815179:-,mitochondrial_ribosomal_protein_S5,SECISBP2->SECIS_binding_protein_2,chr9:91933421-91974557:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	FALSE	231	217	16	283	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	FALSE	231	217	16	283	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NONO--MT-ND5	3	0	NONO	12777	chrX:70520510:+	MT-ND5	16375	chrM:12426:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	NONO->Oncogene{Bushman},chrX:70503042-70521018:+,non-POU_domain_containing,_octamer-binding,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	FALSE	0	0	0	1	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	434	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP5-930J4.4--C5orf51	3	0	RP5-930J4.4	1136	chr1:21069615:+	C5orf51	13191	chr5:41919110:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	RP5-930J4.4->chr1:21069480-21070455:+,C5orf51->chr5:41904290-41921738:+,chromosome_5_open_reading_frame_51	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE2H--KMT2E	3	0	UBE2H	2497	chr7:129591118:-	KMT2E	20750	chr7:104678573:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	UBE2H->chr7:129470572-129592789:-,ubiquitin_conjugating_enzyme_E2_H,KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASAP1--FAM49B	1	7	ASAP1	38335	chr8:131088594:-	FAM49B	54419	chr8:130916831:-	ONLY_REF_SPLICE	YES	7	141	0.53	0.05	0.0118	0.0827	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.53	0.0945	FALSE	0	0	0	2	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDAC4--NDUFA10	2	1	HDAC4	6119	chr2:240219861:-	NDUFA10	51071	chr2:240961757:-	ONLY_REF_SPLICE	YES	139	126	0.02	0.02	0.0236	0.0118	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=6;pct=0.07%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1,Muscle_-_Skeletal=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Cells_-_Transformed_fibroblasts=1},HDAC4->Oncogene{Bushman},chr2:239969864-240323348:-,histone_deacetylase_4,NDUFA10->NADH:ubiquinone_oxidoreductase_subunit_A10,chr2:240831867-240964819:-	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.0354	TRUE	0	0	0	1	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HDHD1--NLGN4X	2	1	HDHD1	6377	chrX:6995261:-	NLGN4X	18416	chrX:6069812:-	ONLY_REF_SPLICE	YES	76	73	0.04	0.04	0.0236	0.0118	HDHD1->chrX:6966961-7066231:-,NLGN4X->chrX:5758678-6146904:-,neuroligin_4,_X-linked	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.04	0.0354	TRUE	0	0	0	1	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--PSMB1	2	0	AC131097.3	2273	chr2:242824786:+	PSMB1	13041	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	AC131097.3->chr2:242823514-243020873:+,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	APEH--MAPKAPK5	2	0	APEH	7410	chr3:49718062:+	MAPKAPK5	21194	chr12:112308889:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	APEH->Oncogene{Bushman},acylaminoacyl-peptide_hydrolase,chr3:49711435-49721396:+,MAPKAPK5->chr12:112279782-112334343:+,mitogen-activated_protein_kinase-activated_protein_kinase_5	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP19--SRP9	2	0	ARHGAP19	3191	chr10:99025836:-	SRP9	22984	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ARHGAP19->Rho_GTPase_activating_protein_19,chr10:98978996-99052413:-,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	2	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGEF18--HSP90AA1	2	0	ARHGEF18	1135	chr19:7460133:+	HSP90AA1	28373	chr14:102552715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ARHGEF18->Rho/Rac_guanine_nucleotide_exchange_factor_18,chr19:7459999-7537363:+,HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B4GALT4--IGSF11	2	0	B4GALT4	12789	chr3:118935087:-	IGSF11	30908	chr3:118649122:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEIGHBORS[65664],B4GALT4->beta-1,4-galactosyltransferase_4,chr3:118930579-118959950:-,IGSF11->chr3:118619404-118864915:-,immunoglobulin_superfamily_member_11	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	FALSE	10	5	0	3	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BSG--ACAT2	2	0	BSG	2405	chr19:572701:+	ACAT2	16057	chr6:160183951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,ACAT2->acetyl-CoA_acetyltransferase_2,chr6:160181360-160200144:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C18orf25--NDUFV2	2	0	C18orf25	1778	chr18:43754296:+	NDUFV2	17730	chr18:9117836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMC4--GNAS	2	0	CMC4	1669	chrX:154298969:-	GNAS	24279	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	CMC4->C-x(9)-C_motif_containing_4,chrX:154289897-154299637:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCTN6--DPYSL2	2	0	DCTN6	1110	chr8:30013922:+	DPYSL2	16862	chr8:26439485:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6,DPYSL2->chr8:26371791-26515694:+,dihydropyrimidinase_like_2	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHX30--KLHL24	2	0	DHX30	2399	chr3:47846910:+	KLHL24	31211	chr3:183368084:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	DHX30->DEAH-box_helicase_30,chr3:47844399-47891685:+,KLHL24->chr3:183353356-183402265:+,kelch_like_family_member_24	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOCK2--TBC1D14	2	0	DOCK2	24644	chr5:169174508:+	TBC1D14	76596	chr4:7000812:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx&tcga_normals:1/3694=0.03%,DOCK2->chr5:169064251-169510386:+,dedicator_of_cytokinesis_2,TBC1D14->TBC1_domain_family_member_14,chr4:6910969-7034845:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FANCC--YTHDC2	2	0	FANCC	18896	chr9:97873745:-	YTHDC2	56602	chr5:112926738:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	FANCC->ArcherDX_panel,Fanconi_anemia_complementation_group_C,FoundationOne_panel,Oncogene{Bushman},chr9:97861336-98079991:-,YTHDC2->YTH_domain_containing_2,chr5:112849380-112930982:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	H3F3B--HP1BP3	2	0	H3F3B	1518	chr17:73781457:-	HP1BP3	18143	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	H3F3B->H3_histone,_family_3B_(H3.3B),chr17:73772515-73781974:-,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPH1--CHORDC1	2	0	HNRNPH1	4526	chr5:179050038:-	CHORDC1	31464	chr11:89936595:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H),CHORDC1->chr11:89934328-89956532:-,cysteine_and_histidine_rich_domain_containing_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0100--RP11-1149O23.3	2	0	KIAA0100	21050	chr17:26945809:-	RP11-1149O23.3	29337	chr8:23083318:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	KIAA0100->KIAA0100,chr17:26941458-26972472:-,RP11-1149O23.3->chr8:23081984-23088439:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LETMD1--KIF18B	2	0	LETMD1	2224	chr12:51442968:+	KIF18B	14600	chr17:43013726:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	LETMD1->LETM1_domain_containing_1,chr12:51441745-51454207:+,KIF18B->chr17:43002077-43025082:-,kinesin_family_member_18B	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00977--NEDD1	2	0	LINC00977	1074	chr8:130253423:-	NEDD1	11184	chr12:97311399:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977,NEDD1->chr12:97301001-97347129:+,neural_precursor_cell_expressed,_developmentally_down-regulated_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MLLT10--SLC11A2	2	0	MLLT10	13812	chr10:21906136:+	SLC11A2	41276	chr12:51404549:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,SLC11A2->chr12:51373184-51422349:-,solute_carrier_family_11_member_2	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP85--PACRGL	2	0	NUP85	1136	chr17:73201889:+	PACRGL	26347	chr4:20706089:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NUP85->chr17:73201754-73231853:+,nucleoporin_85,PACRGL->PARK2_co-regulated_like,chr4:20697905-20754530:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PALLD--DCTD	2	0	PALLD	19548	chr4:169633074:+	DCTD	43732	chr4:183836728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	PALLD->chr4:169418217-169849608:+,palladin,_cytoskeletal_associated_protein,DCTD->chr4:183811213-183839089:-,dCMP_deaminase	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDCD5--ETFDH	2	0	PDCD5	2165	chr19:33073138:+	ETFDH	13021	chr4:159603347:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	PDCD5->chr19:33071974-33078358:+,programmed_cell_death_5,ETFDH->chr4:159593277-159630775:+,electron_transfer_flavoprotein_dehydrogenase	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKCA--VMP1	2	0	PRKCA	2421	chr17:64302245:+	VMP1	37794	chr17:57808782:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1415C14.4--STAG3L5P	2	0	RP11-1415C14.4	4591	chr5:69493082:-	STAG3L5P	16253	chr7:99947340:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	RP11-1415C14.4->chr5:69435402-69503572:-,STAG3L5P->chr7:99933702-99949523:+,stromal_antigen_3-like_5_pseudogene	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-29G8.3--PARPBP	2	0	RP11-29G8.3	6086	chr13:76169126:+	PARPBP	29574	chr12:102547647:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	RP11-29G8.3->chr13:76123909-76381256:+,PARPBP->PARP1_binding_protein,chr12:102513956-102591298:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	4	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0118	0.0472	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.059	TRUE	274	363	69	150	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RSRC2--ZBTB1	2	0	RSRC2	5203	chr12:123005932:-	ZBTB1	24826	chr14:64988205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	RSRC2->arginine/serine-rich_coiled-coil_2,chr12:122989190-123011547:-,ZBTB1->chr14:64970430-65000408:+,zinc_finger_and_BTB_domain_containing_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SH3KBP1--ZC4H2	2	0	SH3KBP1	11946	chrX:19701941:-	ZC4H2	38917	chrX:64141868:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-,ZC4H2->chrX:64136250-64254593:-,zinc_finger_C4H2-type_containing	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLAIN2--ZBTB1	2	0	SLAIN2	1807	chr4:48344145:+	ZBTB1	23767	chr14:64988205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	SLAIN2->SLAIN_motif_family_member_2,chr4:48343339-48428229:+,ZBTB1->chr14:64970430-65000408:+,zinc_finger_and_BTB_domain_containing_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A25--PPM1F	2	0	SLC25A25	1380	chr9:130830859:+	PPM1F	27540	chr22:22280035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	SLC25A25->chr9:130830480-130871524:+,solute_carrier_family_25_member_25,PPM1F->chr22:22273793-22307209:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1F	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG3--PTP4A2	2	0	SNHG3	3181	chr1:28834672:+	PTP4A2	17317	chr1:32385259:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSBP2--EIF3M	2	0	SSBP2	1817	chr5:81046800:-	EIF3M	36906	chr11:32610558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSH2--GIT1	2	0	SSH2	1339	chr17:28256956:-	GIT1	38200	chr17:27910634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEIGHBORS[31884],SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,GIT1->GIT_ArfGAP_1,chr17:27900487-27921072:-	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	FALSE	0	0	0	2	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STAM--RSU1	2	0	STAM	1255	chr10:17686378:+	RSU1	20851	chr10:16824083:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	STAM->chr10:17686124-17757913:+,signal_transducing_adaptor_molecule,RSU1->Ras_suppressor_protein_1,chr10:16632610-16859527:-	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SYPL1--HBP1	2	0	SYPL1	1437	chr7:105752586:-	HBP1	24150	chr7:106840605:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	SYPL1->chr7:105730949-105753022:-,synaptophysin_like_1,HBP1->HMG-box_transcription_factor_1,Oncogene{Bushman},chr7:106809406-106842974:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMX2--EIF3M	2	0	TMX2	1208	chr11:57480279:+	EIF3M	12228	chr11:32611093:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	TMX2->chr11:57480072-57508445:+,thioredoxin_related_transmembrane_protein_2,EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZBED3-AS1--TRAK1	2	0	ZBED3-AS1	1880	chr5:76383444:+	TRAK1	46537	chr3:42251259:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZBED3-AS1->ZBED3_antisense_RNA_1,chr5:76382565-76462734:+,TRAK1->chr3:42055294-42267381:+,trafficking_protein,_kinesin_binding_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFYVE21--KLC1	2	0	ZFYVE21	1250	chr14:104182316:+	KLC1	34861	chr14:104166992:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_FI:{Esophagus=[count:4=pct:1.0],Brain=[count:3=pct:0.5],Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Colon=[count:1=pct:0.5],Pituitary=[count:1=pct:1.9],Breast=[count:1=pct:0.9]},GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_REARRANGEMENT:+:[14179],ZFYVE21->chr14:104182067-104200005:+,zinc_finger_FYVE-type_containing_21,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	10	10	1	10	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF28--ASUN	2	0	ZNF28	3201	chr19:53321197:-	ASUN	22650	chr12:27078784:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZNF28->chr19:53300662-53360853:-,zinc_finger_protein_28,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF627--SMARCA4	2	0	ZNF627	6303	chr19:11708445:+	SMARCA4	47768	chr19:11143966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZNF627->chr19:11670189-11729950:+,zinc_finger_protein_627,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF644--RPL21	2	0	ZNF644	1283	chr1:91487547:-	RPL21	19934	chr13:27827902:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644,RPL21->chr13:27825446-27830828:+,ribosomal_protein_L21	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASAP1--FAM49B	1	2	ASAP1	7774	chr8:131370263:-	FAM49B	60144	chr8:130891717:-	ONLY_REF_SPLICE	YES	3	128	0.5	0.02	0.0118	0.0236	NEIGHBORS[34978],ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.5	0.0354	FALSE	1	0	0	1	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DYRK1A--BCL7A	1	2	DYRK1A	7496	chr21:38792686:+	BCL7A	38162	chr12:122496998:+	ONLY_REF_SPLICE	NO	4	75	0.43	0.04	0.0118	0.0236	DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A,BCL7A->B-cell_CLL/lymphoma_7A,Oncogene{Bushman},chr12:122457328-122499948:+	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.43	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	1	2	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	YES	32	29	0.09	0.09	0.0118	0.0236	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.09	0.0354	TRUE	4	3	0	21	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP54--CCNI	1	1	NUP54	4937	chr4:77065302:-	CCNI	20404	chr4:77987558:-	ONLY_REF_SPLICE	YES	89	113	0.02	0.02	0.0118	0.0118	NUP54->chr4:77035812-77069668:-,nucleoporin_54kDa,CCNI->chr4:77968311-77997158:-,cyclin_I	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR3K--EEF1D	1	1	POLR3K	1153	chr16:103476:-	EEF1D	19016	chr8:144669022:-	ONLY_REF_SPLICE	YES	135	89	0.01	0.02	0.0118	0.0118	POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VIPR2--ESYT2	1	1	VIPR2	6451	chr7:158896448:-	ESYT2	24570	chr7:158591763:-	ONLY_REF_SPLICE	NO	89	37	0.02	0.05	0.0118	0.0118	VIPR2->chr7:158820866-158937649:-,vasoactive_intestinal_peptide_receptor_2,ESYT2->chr7:158523686-158622944:-,extended_synaptotagmin_protein_2	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000953
SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1025	29	0	0.06	0.0118	0.0118	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.0236	FALSE	6	50	7	115	0	FALSE	ACH-000953
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	79	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8089	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.8089	TRUE	0	0	0	518	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	68	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.6963	0.1229	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	0.8192	TRUE	508	994	45	981	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	40	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4096	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4096	TRUE	519	3926	326	965	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	30	6	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.82	1	0.3072	0.0614	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.3686	FALSE	292	1546	117	613	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	94	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0.9625	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0035	FALSE	344	821	44	306	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	88	MT-ND4	1475	chrM:11234:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	95	0	0.49	1	0.0307	0.9011	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	1	0.9318	FALSE	344	827	44	306	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OR51S1--TP53I11	25	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.256	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.256	TRUE	402	216	10	229	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	14	18	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2065	0	0.02	1	0.1434	0.1843	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.3277	FALSE	344	827	44	306	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1638	0.0614	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2252	FALSE	499	1288	110	792	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MNX1-AS1--MYB	16	3	MNX1-AS1	2983	chr7:156809062:+	MYB	7290	chr6:135507041:+	INCL_NON_REF_SPLICE	YES	0	10	1	0.66	0.1638	0.0307	MNX1-AS1->MNX1_antisense_RNA_1_(head_to_head),chr7:156803499-156809120:+,MYB->ArcherDX_panel,FoundationOne_panel,MYB_proto-oncogene,_transcription_factor,Oncogene{Bushman},chr6:135502453-135540311:+	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	1	0.1945	TRUE	0	0	0	1	0	TRUE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	36	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0717	0.3686	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4403	FALSE	344	821	44	306	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	13	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.89	0.94	0.1331	0.041	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.94	0.1741	FALSE	515	4851	409	746	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	13	1	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1331	0.0102	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1433	FALSE	0	26	0	50	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	28	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0614	0.2867	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.3481	FALSE	344	826	44	306	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1024	0.0614	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1638	FALSE	499	1288	110	792	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	11	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1126	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1126	TRUE	0	0	0	100	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	18	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0614	0.1843	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.2457	FALSE	344	826	44	306	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	18	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1908	0	0.01	1	0.0307	0.1843	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.215	FALSE	344	827	44	306	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	6	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	101	0	0.11	1	0.0614	0.0614	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.1228	FALSE	164	806	69	479	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	17	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0.1741	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2048	FALSE	344	821	44	306	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	6	3	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	18	0	0.33	1	0.0614	0.0307	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.0921	FALSE	272	151	14	158	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	9	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0.0922	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1332	FALSE	499	1288	110	792	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	4	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	77	0	0.11	1	0.041	0.0614	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.1024	FALSE	125	705	46	456	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.041	0.041	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.082	FALSE	407	2205	196	549	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0307	0.0614	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.0921	FALSE	499	1288	110	792	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.041	FALSE	499	1288	110	792	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.041	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.041	TRUE	465	1949	224	605	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MNX1-AS1--MYB	3	2	MNX1-AS1	1503	chr7:156804001:+	MYB	7290	chr6:135507041:+	ONLY_REF_SPLICE	YES	32	10	0.14	0.33	0.0307	0.0205	MNX1-AS1->MNX1_antisense_RNA_1_(head_to_head),chr7:156803499-156809120:+,MYB->ArcherDX_panel,FoundationOne_panel,MYB_proto-oncogene,_transcription_factor,Oncogene{Bushman},chr6:135502453-135540311:+	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.33	0.0512	TRUE	0	0	0	1	0	TRUE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	3	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0307	0.0102	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0409	FALSE	0	24	0	62	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	12	1	0.25	0.0307	0.0102	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0409	TRUE	458	1351	185	561	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOR2--UBC	2	1	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	88	25	0.03	0.11	0.0205	0.0102	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.11	0.0307	TRUE	52	148	13	33	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	8	7	0.27	0.3	0.0205	0.0102	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.3	0.0307	FALSE	25	145	6	90	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PICALM--SYTL2	2	1	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	133	4	0.02	0.43	0.0205	0.0102	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.43	0.0307	TRUE	4	2	0	20	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--SNX5	2	1	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	5	261	0.38	0.01	0.0205	0.0102	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.38	0.0307	FALSE	0	5	0	11	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	24436	chr10:114650725:+	ONLY_REF_SPLICE	YES	18	0	0.14	1	0.0205	0.0102	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.0307	FALSE	21	3	0	16	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRI3BP--UBC	2	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	5	99	5	34	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--CHMP1A	2	0	CHD2	6529	chr15:93444529:+	CHMP1A	64627	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Thyroid=[count:2=pct:1.1],Brain=[count:1=pct:0.2]},GTEx_v2:{count=10;pct=0.12%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Whole_Blood=2,Breast_-_Mammary_Tissue=1,Brain_-_Hypothalamus=1,Thyroid=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	2	11	0	5	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--ITPR2	2	0	CHD2	6529	chr15:93444529:+	ITPR2	79623	chr12:26808785:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUTC--FUNDC1	2	0	CUTC	4722	chr10:101496074:+	FUNDC1	16371	chrX:44401347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	CUTC->chr10:101462315-101515891:+,cutC_copper_transporter,FUNDC1->FUN14_domain_containing_1,chrX:44382885-44402247:-	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0205	FALSE	16	356	14	466	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0102	0.041	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.0512	FALSE	275	511	55	178	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	1	1	LINC01036	2179	chr1:187272671:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0102	0.0102	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	FALSE	0	1	0	5	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MPHOSPH9--SMCHD1	1	1	MPHOSPH9	13160	chr12:123694603:-	SMCHD1	86132	chr18:2802526:+	ONLY_REF_SPLICE	YES	42	69	0.05	0.03	0.0102	0.0102	MPHOSPH9->M-phase_phosphoprotein_9,chr12:123636867-123728561:-,SMCHD1->chr18:2655737-2805015:+,structural_maintenance_of_chromosomes_flexible_hinge_domain_containing_1	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.05	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000081
GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	101	7	0.02	0.22	0.0102	0.0102	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GDM1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.22	0.0204	FALSE	8	57	1	47	0	FALSE	ACH-000081
HLF_LIVER	TIMM23B--LINC00843	84	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8659	0.3196	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HLF_LIVER	1	1	1.1855	TRUE	508	994	45	981	0	FALSE	ACH-000393
HLF_LIVER	AP003900.6--AC008132.1	50	51	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	49	0	0.67	1	0.5154	0.5258	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HLF_LIVER	0.67	1	1.0412	TRUE	1	1	0	28	1	FALSE	ACH-000393
HLF_LIVER	NOTCH2NL--AC073254.1	43	28	NOTCH2NL	4800	chr1:145248894:+	AC073254.1	20541	chr2:233460646:-	ONLY_REF_SPLICE	YES	354	0	0.17	1	0.4433	0.2886	NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like,AC073254.1->chr2:233445658-233476681:-	HLF_LIVER	0.17	1	0.7319	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	TIMM23--RP11-464F9.1	48	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	457	3	0.1	0.94	0.4948	0.0309	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HLF_LIVER	0.1	0.94	0.5257	TRUE	519	3926	326	965	0	FALSE	ACH-000393
HLF_LIVER	AP003900.6--AC008132.1	40	13	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	15	0	0.78	1	0.4124	0.134	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HLF_LIVER	0.78	1	0.5464	TRUE	0	0	0	25	0	FALSE	ACH-000393
HLF_LIVER	RP11-344E13.3--UBBP4	24	59	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	285	0	0.23	1	0.2474	0.6082	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	HLF_LIVER	0.23	1	0.8556	TRUE	23	13	0	54	0	FALSE	ACH-000393
HLF_LIVER	MT-ATP6--MT-CO1	36	0	MT-ATP6	1018	chrM:8544:+	MT-CO1	5856	chrM:7078:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3711	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HLF_LIVER	1	1	0.3711	FALSE	183	104	9	328	0	FALSE	ACH-000393
HLF_LIVER	RP11-307P5.1--SASH1	32	8	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	11	12	0.78	0.77	0.3299	0.0825	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HLF_LIVER	0.77	0.78	0.4124	TRUE	0	0	0	16	0	TRUE	ACH-000393
HLF_LIVER	C15orf57--CBX3	17	24	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	65	59	0.39	0.41	0.1753	0.2474	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HLF_LIVER	0.39	0.41	0.4227	TRUE	267	562	48	632	0	FALSE	ACH-000393
HLF_LIVER	MT-ND6--MT-TE	17	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1753	0.0206	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HLF_LIVER	1	1	0.1959	FALSE	499	1288	110	792	0	FALSE	ACH-000393
HLF_LIVER	MT-TA--MT-TC	16	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1649	0.0103	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HLF_LIVER	1	1	0.1752	FALSE	462	80	0	856	0	FALSE	ACH-000393
HLF_LIVER	C15orf57--CBX3	12	14	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	64	64	0.29	0.29	0.1237	0.1443	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HLF_LIVER	0.29	0.29	0.268	TRUE	267	562	48	632	0	FALSE	ACH-000393
HLF_LIVER	RP11-634B7.4--TRIM58	12	13	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	72	0.96	0.26	0.1237	0.134	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	HLF_LIVER	0.26	0.96	0.2577	TRUE	158	633	76	73	0	FALSE	ACH-000393
HLF_LIVER	MT-ND4--MT-ATP8	15	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1546	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLF_LIVER	1	1	0.1546	FALSE	230	193	14	283	0	FALSE	ACH-000393
HLF_LIVER	RP11-459O1.2--CNR1	10	13	RP11-459O1.2	2236	chr6:89033719:-	CNR1	14602	chr6:88855056:-	ONLY_REF_SPLICE	YES	0	12	1	0.66	0.1031	0.134	RP11-459O1.2->chr6:89008669-89130752:-,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	HLF_LIVER	0.66	1	0.2371	TRUE	0	1	0	2	1	TRUE	ACH-000393
HLF_LIVER	MT-ND6--MT-ND5	11	5	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	2803	1	0.01	0.1134	0.0515	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HLF_LIVER	0.01	1	0.1649	FALSE	101	855	57	72	0	FALSE	ACH-000393
HLF_LIVER	ZNF654--HMGB2	11	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1134	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HLF_LIVER	1	1	0.1134	TRUE	0	0	0	518	0	FALSE	ACH-000393
HLF_LIVER	C15orf57--CBX3	6	14	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	64	63	0.24	0.24	0.0619	0.1443	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HLF_LIVER	0.24	0.24	0.2062	TRUE	267	562	48	632	0	FALSE	ACH-000393
HLF_LIVER	MT-ND6--MT-TE	9	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0928	0.0206	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HLF_LIVER	1	1	0.1134	FALSE	499	1288	110	792	0	FALSE	ACH-000393
HLF_LIVER	HSP90AB1--MT-RNR2	8	4	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4501	0	0	1	0.0825	0.0412	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HLF_LIVER	0	1	0.1237	FALSE	13	9	0	364	0	FALSE	ACH-000393
HLF_LIVER	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0928	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HLF_LIVER	1	1	0.0928	TRUE	0	0	0	434	0	FALSE	ACH-000393
HLF_LIVER	AP003900.6--AC008132.1	1	31	AP003900.6	3299	chr21:11174002:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	NO	49	0	0.4	1	0.0103	0.3196	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HLF_LIVER	0.4	1	0.3299	TRUE	1	1	0	28	1	FALSE	ACH-000393
HLF_LIVER	MT-ATP6--MT-CO1	8	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9034	18521	0	0	0.0825	0.0103	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HLF_LIVER	0	0	0.0928	FALSE	183	104	9	328	0	FALSE	ACH-000393
HLF_LIVER	SERPINE1--MT-ND4	8	1	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	7070	12296	0	0	0.0825	0.0103	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HLF_LIVER	0	0	0.0928	FALSE	1	0	0	29	0	FALSE	ACH-000393
HLF_LIVER	RP11-386G11.10--MYH9	7	4	RP11-386G11.10	2083	chr12:49522647:+	MYH9	37271	chr22:36691103:-	INCL_NON_REF_SPLICE	YES	8	2139	0.58	0.01	0.0722	0.0412	RP11-386G11.10->chr12:49521565-49541652:+,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	HLF_LIVER	0.01	0.58	0.1134	TRUE	0	0	0	3	0	FALSE	ACH-000393
HLF_LIVER	MT-ND6--MT-TE	7	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0.0309	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HLF_LIVER	1	1	0.1031	FALSE	499	1288	110	792	0	FALSE	ACH-000393
HLF_LIVER	MT-ND6--MT-TE	5	9	MT-ND6	1194	chrM:14480:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0515	0.0928	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HLF_LIVER	1	1	0.1443	FALSE	499	1288	110	792	0	FALSE	ACH-000393
HLF_LIVER	NOTCH2NL--AC073254.1	5	8	NOTCH2NL	4800	chr1:145248894:+	AC073254.1	23853	chr2:233451456:-	ONLY_REF_SPLICE	YES	354	2	0.04	0.87	0.0515	0.0825	NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like,AC073254.1->chr2:233445658-233476681:-	HLF_LIVER	0.04	0.87	0.134	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	RP11-476K15.1--CTD-2015H3.2	6	4	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	4	0	0.71	1	0.0619	0.0412	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HLF_LIVER	0.71	1	0.1031	FALSE	0	46	0	73	0	FALSE	ACH-000393
HLF_LIVER	RP11-96H19.1--RP11-446N19.1	6	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	0	0.64	1	0.0619	0.0309	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HLF_LIVER	0.64	1	0.0928	FALSE	515	4851	409	746	0	FALSE	ACH-000393
HLF_LIVER	LINC01036--LINC01037	6	2	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0619	0.0206	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HLF_LIVER	1	1	0.0825	FALSE	0	24	0	62	0	FALSE	ACH-000393
HLF_LIVER	RP11-307P5.1--SASH1	4	10	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	12	1	0.54	0.0412	0.1031	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HLF_LIVER	0.54	1	0.1443	TRUE	0	2	0	37	2	FALSE	ACH-000393
HLF_LIVER	MT-ND5--MT-ND4L	6	1	MT-ND5	2788	chrM:14124:+	MT-ND4L	6089	chrM:10746:+	INCL_NON_REF_SPLICE	YES	0	1327	1	0.01	0.0619	0.0103	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1571],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HLF_LIVER	0.01	1	0.0722	FALSE	1	4	0	2	0	FALSE	ACH-000393
HLF_LIVER	RP11-634B7.4--TRIM58	3	13	RP11-634B7.4	1685	chr1:247803735:+	TRIM58	9351	chr1:248023919:+	INCL_NON_REF_SPLICE	YES	1	72	0.94	0.18	0.0309	0.134	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	HLF_LIVER	0.18	0.94	0.1649	TRUE	158	633	76	73	0	FALSE	ACH-000393
HLF_LIVER	SERPINE1--MT-ND4	6	1	SERPINE1	4767	chr7:100775260:+	MT-ND4	14110	chrM:11239:+	INCL_NON_REF_SPLICE	YES	7036	11943	0	0	0.0619	0.0103	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HLF_LIVER	0	0	0.0722	FALSE	1	0	0	29	0	FALSE	ACH-000393
HLF_LIVER	MT-ND4--MT-ATP8	6	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLF_LIVER	1	1	0.0619	FALSE	231	204	14	283	0	FALSE	ACH-000393
HLF_LIVER	MT-ND4--MT-ATP8	6	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLF_LIVER	1	1	0.0619	FALSE	231	205	14	283	0	FALSE	ACH-000393
HLF_LIVER	MT-ND4--MT-ATP8	6	0	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLF_LIVER	1	1	0.0619	FALSE	231	217	16	283	0	FALSE	ACH-000393
HLF_LIVER	FTH1--ACTB	5	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	2011	0	0	1	0.0515	0.0206	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HLF_LIVER	0	1	0.0721	FALSE	1	0	0	97	0	FALSE	ACH-000393
HLF_LIVER	RP11-459O1.2--CNR1	2	14	RP11-459O1.2	2236	chr6:89033719:-	CNR1	7968	chr6:88874013:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0.1443	RP11-459O1.2->chr6:89008669-89130752:-,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	HLF_LIVER	1	1	0.1649	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	RP11-459O1.2--CNR1	2	14	RP11-459O1.2	2236	chr6:89033719:-	CNR1	13431	chr6:88857525:-	ONLY_REF_SPLICE	YES	0	4	1	0.8	0.0206	0.1443	RP11-459O1.2->chr6:89008669-89130752:-,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	HLF_LIVER	0.8	1	0.1649	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	MT-ND6--MT-TE	4	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0.0515	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HLF_LIVER	1	1	0.0927	FALSE	499	1288	110	792	0	FALSE	ACH-000393
HLF_LIVER	CCDC157--HORMAD2	5	0	CCDC157	1498	chr22:30753121:+	HORMAD2	28170	chr22:30572052:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0515	0	CCDC157->chr22:30752624-30774647:+,coiled-coil_domain_containing_157,HORMAD2->HORMA_domain_containing_2,chr22:30476163-30573064:+	HLF_LIVER	1	1	0.0515	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	HSP90AB1--MT-RNR2	4	4	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4513	0	0	1	0.0412	0.0412	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HLF_LIVER	0	1	0.0824	FALSE	13	9	0	364	0	FALSE	ACH-000393
HLF_LIVER	IGFBP4--NPM1	5	0	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0515	0	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HLF_LIVER	1	1	0.0515	TRUE	0	0	0	38	0	FALSE	ACH-000393
HLF_LIVER	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0515	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HLF_LIVER	1	1	0.0515	FALSE	462	80	0	856	0	FALSE	ACH-000393
HLF_LIVER	MT-ND6--MT-ND5	4	3	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1609	1	0	0.0412	0.0309	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HLF_LIVER	0	1	0.0721	FALSE	101	855	57	72	0	FALSE	ACH-000393
HLF_LIVER	FTH1--ACTB	4	2	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	2014	0	0	1	0.0412	0.0206	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HLF_LIVER	0	1	0.0618	FALSE	1	0	0	97	0	FALSE	ACH-000393
HLF_LIVER	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.46	0.0412	0.0206	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HLF_LIVER	0.46	1	0.0618	TRUE	458	1351	185	561	0	FALSE	ACH-000393
HLF_LIVER	MT-ATP6--MT-CO1	4	1	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	9215	16998	0	0	0.0412	0.0103	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HLF_LIVER	0	0	0.0515	FALSE	183	104	9	328	0	FALSE	ACH-000393
HLF_LIVER	MT-ATP6--MT-CO1	4	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	8853	18181	0	0	0.0412	0.0103	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HLF_LIVER	0	0	0.0515	FALSE	183	104	9	328	0	FALSE	ACH-000393
HLF_LIVER	MT-ND4--MT-ATP8	4	1	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11456	61	0	0.08	0.0412	0.0103	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLF_LIVER	0	0.08	0.0515	FALSE	231	217	16	283	0	FALSE	ACH-000393
HLF_LIVER	MT-TA--MT-TC	4	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0.0103	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HLF_LIVER	1	1	0.0515	FALSE	462	80	0	856	0	FALSE	ACH-000393
HLF_LIVER	RP11-307P5.1--SASH1	2	9	RP11-307P5.1	4371	chr6:148054947:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	159	12	0.06	0.48	0.0206	0.0928	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HLF_LIVER	0.06	0.48	0.1134	TRUE	0	0	0	11	0	TRUE	ACH-000393
HLF_LIVER	SERPINE1--MT-ND4	4	1	SERPINE1	4768	chr7:100775261:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	NO	7002	12296	0	0	0.0412	0.0103	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HLF_LIVER	0	0	0.0515	FALSE	1	0	0	29	0	FALSE	ACH-000393
HLF_LIVER	CITED2--COL12A1	4	0	CITED2	2124	chr6:139694634:-	COL12A1	31488	chr6:75851856:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	CITED2->Cbp/p300_interacting_transactivator_with_Glu/Asp_rich_carboxy-terminal_domain_2,Oncogene{Bushman},chr6:139693393-139695757:-,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1	HLF_LIVER	1	1	0.0412	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	JMJD1C--RP11-144G16.1	4	0	JMJD1C	2633	chr10:65140078:-	RP11-144G16.1	35676	chr10:64884631:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0412	0	NEIGHBORS[41684],JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C,RP11-144G16.1->chr10:64883698-64885297:-	HLF_LIVER	1	1	0.0412	FALSE	0	0	0	1	0	FALSE	ACH-000393
HLF_LIVER	MT-ND4--MT-ATP8	4	0	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLF_LIVER	1	1	0.0412	FALSE	231	217	16	283	0	FALSE	ACH-000393
HLF_LIVER	MT-ND4--MT-ATP8	4	0	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLF_LIVER	1	1	0.0412	FALSE	231	217	16	283	0	FALSE	ACH-000393
HLF_LIVER	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HLF_LIVER	1	1	0.0412	FALSE	499	1288	110	792	0	FALSE	ACH-000393
HLF_LIVER	RP11-476K15.1--CTD-2015H3.2	3	4	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0309	0.0412	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HLF_LIVER	0.64	1	0.0721	FALSE	0	46	0	73	0	FALSE	ACH-000393
HLF_LIVER	RP11-96H19.1--RP11-446N19.1	2	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.67	1	0.0206	0.0825	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HLF_LIVER	0.67	1	0.1031	FALSE	407	2205	196	549	0	FALSE	ACH-000393
HLF_LIVER	RP11-459O1.2--CNR1	3	3	RP11-459O1.2	1090	chr6:89130663:-	CNR1	14602	chr6:88855056:-	ONLY_REF_SPLICE	YES	3	12	0.67	0.33	0.0309	0.0309	RP11-459O1.2->chr6:89008669-89130752:-,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	HLF_LIVER	0.33	0.67	0.0618	TRUE	0	1	0	2	1	TRUE	ACH-000393
HLF_LIVER	FTH1--ACTB	3	2	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	2171	0	0	1	0.0309	0.0206	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HLF_LIVER	0	1	0.0515	FALSE	1	0	0	97	0	FALSE	ACH-000393
HLF_LIVER	MT-ATP6--MT-CO1	3	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	10354	17167	0	0	0.0309	0.0206	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HLF_LIVER	0	0	0.0515	FALSE	183	104	9	328	0	FALSE	ACH-000393
HLF_LIVER	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0.0206	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HLF_LIVER	1	1	0.0515	FALSE	462	80	0	856	0	FALSE	ACH-000393
HLF_LIVER	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	7	1	0.36	0.0309	0.0103	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HLF_LIVER	0.36	1	0.0412	TRUE	465	1949	224	605	0	FALSE	ACH-000393
HLF_LIVER	MT-ND4--MT-ATP8	3	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLF_LIVER	1	1	0.0309	FALSE	230	193	14	283	0	FALSE	ACH-000393
HLF_LIVER	MT-ND4--MT-ATP8	3	0	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLF_LIVER	1	1	0.0309	FALSE	231	217	16	283	0	FALSE	ACH-000393
HLF_LIVER	MT-ND4--MT-ATP8	3	0	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0309	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLF_LIVER	1	1	0.0309	FALSE	231	217	16	283	0	FALSE	ACH-000393
HLF_LIVER	NOTCH2NL--AC073254.1	1	8	NOTCH2NL	4800	chr1:145248894:+	AC073254.1	22707	chr2:233455850:-	ONLY_REF_SPLICE	NO	354	0	0.02	1	0.0103	0.0825	NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like,AC073254.1->chr2:233445658-233476681:-	HLF_LIVER	0.02	1	0.0928	TRUE	0	0	0	1	0	FALSE	ACH-000393
HLF_LIVER	RP11-640M9.1--SEC22B	2	4	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	25754	chr1:145103908:+	ONLY_REF_SPLICE	YES	26	1150	0.19	0.01	0.0206	0.0412	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HLF_LIVER	0.01	0.19	0.0618	FALSE	14	18	7	11	0	FALSE	ACH-000393
HLF_LIVER	RP11-640M9.1--SEC22B	2	4	RP11-640M9.1	3158	chr1:144519813:-	SEC22B	25754	chr1:145103908:+	ONLY_REF_SPLICE	YES	35	1150	0.15	0.01	0.0206	0.0412	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HLF_LIVER	0.01	0.15	0.0618	FALSE	14	18	7	11	0	FALSE	ACH-000393
HLF_LIVER	WTAPP1--RUVBL1	3	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	HLF_LIVER	1	1	0.0309	TRUE	9	252	6	66	0	FALSE	ACH-000393
HLF_LIVER	NRIP1--AF127936.7	2	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.31	1	0.0206	0.0309	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HLF_LIVER	0.31	1	0.0515	FALSE	125	705	46	456	0	FALSE	ACH-000393
HLF_LIVER	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0206	0.0309	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HLF_LIVER	0.71	1	0.0515	FALSE	467	2173	244	435	0	FALSE	ACH-000393
HLF_LIVER	AP003900.6--AC008132.1	1	6	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	49	9	0.12	0.44	0.0103	0.0619	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	HLF_LIVER	0.12	0.44	0.0722	TRUE	0	0	0	13	0	TRUE	ACH-000393
HLF_LIVER	NRIP1--AF127936.7	2	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0206	0.0206	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HLF_LIVER	0.8	1	0.0412	FALSE	292	1546	117	613	0	FALSE	ACH-000393
HLF_LIVER	POLE--ANKLE2	2	2	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	61	75	0.06	0.05	0.0206	0.0206	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	HLF_LIVER	0.05	0.06	0.0412	TRUE	0	0	0	11	0	FALSE	ACH-000393
HLF_LIVER	AC002066.1--AC073130.1	2	1	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0206	0.0103	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	HLF_LIVER	0.43	1	0.0309	FALSE	0	1	1	30	0	FALSE	ACH-000393
HLF_LIVER	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0.0103	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HLF_LIVER	1	1	0.0309	TRUE	477	1352	189	275	0	FALSE	ACH-000393
HLF_LIVER	ADAM17--YWHAQ	2	0	ADAM17	1284	chr2:9695638:-	YWHAQ	29763	chr2:9731644:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[28180],ADAM17->ADAM_metallopeptidase_domain_17,chr2:9628615-9695921:-,YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta	HLF_LIVER	1	1	0.0206	TRUE	0	4	0	5	2	TRUE	ACH-000393
HLF_LIVER	ASPH--SP1	2	0	ASPH	8053	chr8:62593527:-	SP1	50342	chr12:53775443:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	ATP6V1H--ZNF507	2	0	ATP6V1H	2981	chr8:54754138:-	ZNF507	34170	chr19:32851410:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-,ZNF507->chr19:32836500-32878573:+,zinc_finger_protein_507	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	C12orf65--CORO1C	2	0	C12orf65	1979	chr12:123718441:+	CORO1C	18295	chr12:109095099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	C12orf65->chr12:123717463-123742506:+,chromosome_12_open_reading_frame_65,CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	DPYD--LSMEM1	2	0	DPYD	16809	chr1:98039316:-	LSMEM1	40328	chr7:112129865:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,LSMEM1->chr7:112120908-112131117:+,leucine_rich_single-pass_membrane_protein_1	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	EMC8--COTL1	2	0	EMC8	1544	chr16:85832671:-	COTL1	21402	chr16:84600561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	EMC8->ER_membrane_protein_complex_subunit_8,chr16:85805364-85833214:-,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	HLF_LIVER	1	1	0.0206	TRUE	0	6	0	16	3	TRUE	ACH-000393
HLF_LIVER	FLNA--SHC1	2	0	FLNA	9497	chrX:153590347:-	SHC1	31396	chr1:154938553:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	FLNA->chrX:153576892-153603006:-,filamin_A,SHC1->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_transforming_protein_1,chr1:154934774-154946871:-	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HLF_LIVER	1	1	0.0206	TRUE	3	14	2	43	0	FALSE	ACH-000393
HLF_LIVER	MCM5--TSR3	2	0	MCM5	15791	chr22:35816005:+	TSR3	24816	chr16:1401001:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	MCM5->Oncogene{Bushman},chr22:35796056-35821423:+,minichromosome_maintenance_complex_component_5,TSR3->TSR3,_acp_transferase_ribosome_maturation_factor,chr16:1399241-1401912:-	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	MIB1--ITGB1	2	0	MIB1	1167	chr18:19285084:+	ITGB1	47409	chr10:33224486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1,ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	PLAC8--COQ2	2	0	PLAC8	5072	chr4:84035819:-	COQ2	18884	chr4:84200267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	PLAC8->chr4:84011201-84058228:-,placenta_specific_8,COQ2->chr4:84182689-84206067:-,coenzyme_Q2,_polyprenyltransferase	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	RP11-459O1.2--CNR1	1	4	RP11-459O1.2	1090	chr6:89130663:-	CNR1	13431	chr6:88857525:-	ONLY_REF_SPLICE	NO	3	4	0.62	0.56	0.0103	0.0412	RP11-459O1.2->chr6:89008669-89130752:-,CNR1->cannabinoid_receptor_1_(brain),chr6:88849583-88876078:-	HLF_LIVER	0.56	0.62	0.0515	TRUE	0	1	0	1	1	TRUE	ACH-000393
HLF_LIVER	SERPINE1--MRPS18B	2	0	SERPINE1	4857	chr7:100775350:+	MRPS18B	17565	chr6:30592660:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MRPS18B->chr6:30585486-30594172:+,mitochondrial_ribosomal_protein_S18B	HLF_LIVER	1	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	UVSSA--MAEA	2	0	UVSSA	1924	chr4:1341977:+	MAEA	26629	chr4:1305767:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	GTEx_FI:{Blood=[count:5=pct:2.9],Skin=[count:4=pct:1.3],Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:1=pct:0.8],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[7119],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	HLF_LIVER	1	1	0.0206	TRUE	0	3	0	4	2	TRUE	ACH-000393
HLF_LIVER	VAPB--GNAS	2	0	VAPB	1396	chr20:56964573:+	GNAS	36861	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0206	0	VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HLF_LIVER	1	1	0.0206	TRUE	0	3	0	7	1	TRUE	ACH-000393
HLF_LIVER	AP003900.6--RP11-417J8.1	1	3	AP003900.6	3299	chr21:11174002:+	RP11-417J8.1	9132	chr1:142557333:+	ONLY_REF_SPLICE	YES	49	18	0.08	0.18	0.0103	0.0309	AP003900.6->chr21:11169720-11184046:+,RP11-417J8.1->chr1:142553293-142559170:+	HLF_LIVER	0.08	0.18	0.0412	TRUE	0	0	0	1	0	TRUE	ACH-000393
HLF_LIVER	C1orf43--UBAP2L	1	1	C1orf43	5048	chr1:154184796:-	UBAP2L	26675	chr1:154226376:+	ONLY_REF_SPLICE	YES	680	194	0	0.01	0.0103	0.0103	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Uterus=1},NEIGHBORS_OVERLAP:-:+:[449],C1orf43->chr1:154179182-154193104:-,chromosome_1_open_reading_frame_43,UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like	HLF_LIVER	0	0.01	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000393
HLF_LIVER	CDC42SE2--SKP1	1	1	CDC42SE2	5200	chr5:130599859:+	SKP1	22614	chr5:133510205:-	ONLY_REF_SPLICE	YES	10	433	0.17	0	0.0103	0.0103	GTEx&tcga_normals:1/3694=0.03%,CDC42SE2->CDC42_small_effector_2,chr5:130581186-130734140:+,SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-	HLF_LIVER	0	0.17	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000393
HLF_LIVER	DANCR--SNX5	1	1	DANCR	1530	chr4:53579126:+	SNX5	10453	chr20:17941969:-	ONLY_REF_SPLICE	YES	683	978	0	0	0.0103	0.0103	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	HLF_LIVER	0	0	0.0206	FALSE	0	0	0	7	0	FALSE	ACH-000393
HLF_LIVER	ENC1--ARHGEF28	1	1	ENC1	2118	chr5:73936132:-	ARHGEF28	28519	chr5:73136305:+	ONLY_REF_SPLICE	NO	203	79	0.01	0.02	0.0103	0.0103	ENC1->Oncogene{Bushman},chr5:73923234-73937249:-,ectodermal-neural_cortex_1,ARHGEF28->Rho_guanine_nucleotide_exchange_factor_28,chr5:72921983-73237818:+	HLF_LIVER	0.01	0.02	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000393
HLF_LIVER	IMMP1L--ELP4	1	1	IMMP1L	1127	chr11:31531066:-	ELP4	20004	chr11:31541603:+	ONLY_REF_SPLICE	YES	3	60	0.4	0.03	0.0103	0.0103	LOCAL_INVERSION:-:+:[105],IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1,ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4	HLF_LIVER	0.03	0.4	0.0206	TRUE	0	3	0	1	1	FALSE	ACH-000393
HLF_LIVER	LINC01036--LINC01037	1	1	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0103	0.0103	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HLF_LIVER	1	1	0.0206	FALSE	0	26	0	50	0	FALSE	ACH-000393
HLF_LIVER	PLEKHG5--CPSF3L	1	1	PLEKHG5	8510	chr1:6537589:-	CPSF3L	31008	chr1:1250998:-	ONLY_REF_SPLICE	NO	31	173	0.06	0.01	0.0103	0.0103	PLEKHG5->chr1:6526152-6580121:-,pleckstrin_homology_and_RhoGEF_domain_containing_G5,CPSF3L->chr1:1246965-1260071:-,cleavage_and_polyadenylation_specific_factor_3-like	HLF_LIVER	0.01	0.06	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000393
HLF_LIVER	PRKDC--MCM4	1	1	PRKDC	69907	chr8:48715867:-	MCM4	96812	chr8:48882358:+	ONLY_REF_SPLICE	NO	275	327	0.01	0.01	0.0103	0.0103	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[2],PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4	HLF_LIVER	0.01	0.01	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000393
HLF_LIVER	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	2	1	0.5	0.0103	0.0103	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HLF_LIVER	0.5	1	0.0206	TRUE	160	277	29	98	0	FALSE	ACH-000393
HLF_LIVER	RP11-640M9.1--SEC22B	1	1	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	YES	26	1013	0.07	0	0.0103	0.0103	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HLF_LIVER	0	0.07	0.0206	FALSE	20	16	6	14	0	FALSE	ACH-000393
HLF_LIVER	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	1	1314	0.67	0	0.0103	0.0103	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HLF_LIVER	0	0.67	0.0206	FALSE	0	59	0	125	0	FALSE	ACH-000393
HLF_LIVER	TAX1BP1--HNRNPA2B1	1	1	TAX1BP1	16463	chr7:27839709:+	HNRNPA2B1	34834	chr7:26237352:-	ONLY_REF_SPLICE	YES	244	2976	0.01	0	0.0103	0.0103	TAX1BP1->Tax1_binding_protein_1,chr7:27778950-27884183:+,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1	HLF_LIVER	0	0.01	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000393
HLF_LIVER	TLE1--PTBP3	1	1	TLE1	4193	chr9:84300591:-	PTBP3	28771	chr9:115060196:-	ONLY_REF_SPLICE	YES	109	140	0.02	0.01	0.0103	0.0103	TLE1->chr9:84198598-84304220:-,transducin_like_enhancer_of_split_1,PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3	HLF_LIVER	0.01	0.02	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000393
HLF_LIVER	VCL--ADK	1	1	VCL	1262	chr10:75758133:+	ADK	43773	chr10:76429941:+	ONLY_REF_SPLICE	YES	1423	341	0	0.01	0.0103	0.0103	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[31042],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ADK->adenosine_kinase,chr10:75910960-76469061:+	HLF_LIVER	0	0.01	0.0206	FALSE	0	2	0	3	0	FALSE	ACH-000393
HCC1428_BREAST	ESR1--CCDC170	181	62	ESR1	3373	chr6:152023140:+	CCDC170	43783	chr6:151936578:+	ONLY_REF_SPLICE	YES	0	5	1	0.98	1.4738	0.5048	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	HCC1428_BREAST	0.98	1	1.9786	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	NGFR--SPAG9	178	63	NGFR	5719	chr17:47584020:+	SPAG9	41158	chr17:49067233:-	ONLY_REF_SPLICE	YES	0	146	1	0.62	1.4493	0.513	{Klijn_CCL:Breast=1},NGFR->Oncogene{Bushman},chr17:47572655-47592379:+,nerve_growth_factor_receptor,SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9	HCC1428_BREAST	0.62	1	1.9623	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	TIMM23B--LINC00843	185	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5063	0.2524	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1428_BREAST	1	1	1.7587	TRUE	508	994	45	981	0	FALSE	ACH-000352
HCC1428_BREAST	SPAG9--NGFR	134	43	SPAG9	27482	chr17:49067811:-	NGFR	52230	chr17:47587774:+	ONLY_REF_SPLICE	YES	152	0	0.54	1	1.0911	0.3501	{Klijn_CCL:Breast=1},SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,NGFR->Oncogene{Bushman},chr17:47572655-47592379:+,nerve_growth_factor_receptor	HCC1428_BREAST	0.54	1	1.4412	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	SLC37A1--ABCG1	126	52	SLC37A1	19544	chr21:43979199:+	ABCG1	47447	chr21:43697005:+	ONLY_REF_SPLICE	YES	33	24	0.84	0.88	1.0259	0.4234	{Klijn_CCL:Breast=1},SLC37A1->chr21:43916118-44001550:+,solute_carrier_family_37_member_1,ABCG1->ATP_binding_cassette_subfamily_G_member_1,chr21:43619799-43717354:+	HCC1428_BREAST	0.84	0.88	1.4493	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	RP11-206L10.11--PLA2G2D	106	50	RP11-206L10.11	2270	chr1:764484:+	PLA2G2D	21380	chr1:20442970:-	ONLY_REF_SPLICE	YES	134	0	0.54	1	0.8631	0.4071	RP11-206L10.11->chr1:762988-794826:+,PLA2G2D->chr1:20438432-20446050:-,phospholipase_A2_group_IID	HCC1428_BREAST	0.54	1	1.2702	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	TIMM23--RP11-464F9.1	106	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	205	6	0.35	0.95	0.8631	0.0244	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC1428_BREAST	0.35	0.95	0.8875	TRUE	519	3926	326	965	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	22	190	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	17	0	0.93	1	0.1791	1.547	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.93	1	1.7261	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	RNF187--OBSCN	59	10	RNF187	2992	chr1:228676753:+	OBSCN	83381	chr1:228538542:+	ONLY_REF_SPLICE	YES	130	1	0.35	0.99	0.4804	0.0814	RNF187->chr1:228674762-228683467:+,ring_finger_protein_187,OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF	HCC1428_BREAST	0.35	0.99	0.5618	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MINOS1--HS2ST1	56	6	MINOS1	1127	chr1:19923603:+	HS2ST1	21415	chr1:87538617:+	ONLY_REF_SPLICE	YES	240	46	0.21	0.57	0.456	0.0489	MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1	HCC1428_BREAST	0.21	0.57	0.5049	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	8	197	MT-ND4	1968	chrM:11727:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	9235	0	0.02	1	0.0651	1.604	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.02	1	1.6691	FALSE	344	827	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	8	190	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	13	0	0.94	1	0.0651	1.547	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.94	1	1.6121	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	8	186	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	12	0	0.94	1	0.0651	1.5145	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.94	1	1.5796	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	VPS13D--IFFO2	52	7	VPS13D	9991	chr1:12318160:+	IFFO2	97817	chr1:19238577:-	ONLY_REF_SPLICE	YES	9	8	0.87	0.88	0.4234	0.057	VPS13D->chr1:12290124-12572099:+,vacuolar_protein_sorting_13_homolog_D,IFFO2->chr1:19230775-19283180:-,intermediate_filament_family_orphan_2	HCC1428_BREAST	0.87	0.88	0.4804	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	5	191	MT-ND4	1209	chrM:10968:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	17	0	0.92	1	0.0407	1.5552	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.92	1	1.5959	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	6	186	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	13	0	0.94	1	0.0489	1.5145	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.94	1	1.5634	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	4	193	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	17	0	0.92	1	0.0326	1.5715	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.92	1	1.6041	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	4	193	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	17	0	0.92	1	0.0326	1.5715	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.92	1	1.6041	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	3	194	MT-ND4	1285	chrM:11044:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	17	0	0.92	1	0.0244	1.5796	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.92	1	1.604	FALSE	344	827	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	5	183	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	10	0	0.95	1	0.0407	1.4901	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.95	1	1.5308	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	ZYG11A--RP11-335E6.2	46	15	ZYG11A	8974	chr1:53333449:+	RP11-335E6.2	22251	chr1:63628418:+	ONLY_REF_SPLICE	YES	6	0	0.91	1	0.3745	0.1221	ZYG11A->chr1:53308183-53360670:+,zyg-11_family_member_A,_cell_cycle_regulator,RP11-335E6.2->chr1:63604921-63628824:+	HCC1428_BREAST	0.91	1	0.4966	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	3	185	MT-ND4	1110	chrM:10869:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	11	1	0.94	0.99	0.0244	1.5063	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.94	0.99	1.5307	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-TA--MT-TC	47	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3827	0.0244	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1428_BREAST	1	1	0.4071	FALSE	462	80	0	856	0	FALSE	ACH-000352
HCC1428_BREAST	RP11-123O10.4--GRIP1	42	11	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.342	0.0896	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1428_BREAST	1	1	0.4316	FALSE	416	2512	207	587	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	11	133	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	0	0.96	1	0.0896	1.0829	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.96	1	1.1725	FALSE	344	821	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	OR51S1--TP53I11	44	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3583	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HCC1428_BREAST	1	1	0.3583	TRUE	402	216	10	229	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	11	129	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	11	0	0.93	1	0.0896	1.0504	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.93	1	1.14	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	NRIP1--AF127936.7	43	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.3501	0.0081	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1428_BREAST	0.98	1	0.3582	FALSE	292	1546	117	613	0	FALSE	ACH-000352
HCC1428_BREAST	CD151--BLVRB	39	16	CD151	5001	chr11:836843:+	BLVRB	12221	chr19:40964452:-	ONLY_REF_SPLICE	YES	391	887	0.12	0.06	0.3176	0.1303	CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+,BLVRB->biliverdin_reductase_B,chr19:40953696-40971747:-	HCC1428_BREAST	0.06	0.12	0.4479	TRUE	0	0	0	1	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	3	156	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	6	0	0.96	1	0.0244	1.2702	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.96	1	1.2946	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	3	147	MT-ND4	1880	chrM:11639:+	MT-ND4L	5602	chrM:10693:+	INCL_NON_REF_SPLICE	YES	7625	0	0.02	1	0.0244	1.1969	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.02	1	1.2213	FALSE	344	827	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	8	126	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	17	0	0.89	1	0.0651	1.0259	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.89	1	1.091	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	SIRT3--CD151	37	9	SIRT3	7732	chr11:224078:-	CD151	17644	chr11:834530:+	ONLY_REF_SPLICE	YES	1	5	0.98	0.9	0.3013	0.0733	SIRT3->chr11:215458-236931:-,sirtuin_3,CD151->CD151_molecule_(Raph_blood_group),Oncogene{Bushman},chr11:832843-839831:+	HCC1428_BREAST	0.9	0.98	0.3746	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	TLN2--RP11-1069G10.2	37	9	TLN2	1160	chr15:62682884:+	RP11-1069G10.2	79922	chr15:63190850:+	ONLY_REF_SPLICE	YES	2	3	0.96	0.94	0.3013	0.0733	NEIGHBORS[51181],TLN2->chr15:62682725-63136830:+,talin_2,RP11-1069G10.2->chr15:63188011-63191742:+	HCC1428_BREAST	0.94	0.96	0.3746	FALSE	0	0	0	1	0	FALSE	ACH-000352
HCC1428_BREAST	CDK5RAP2--MEGF9	37	8	CDK5RAP2	5802	chr9:123307992:-	MEGF9	55388	chr9:123385033:-	ONLY_REF_SPLICE	YES	46	40	0.49	0.53	0.3013	0.0651	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[20643],CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-,MEGF9->chr9:123363091-123476748:-,multiple_EGF_like_domains_9	HCC1428_BREAST	0.49	0.53	0.3664	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	5	136	MT-ND4	1301	chrM:11060:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	27	0	0.84	1	0.0407	1.1074	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.84	1	1.1481	FALSE	344	827	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND6--MT-TE	36	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2931	0.0407	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1428_BREAST	1	1	0.3338	FALSE	499	1288	110	792	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	5	125	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	12	0	0.92	1	0.0407	1.0178	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.92	1	1.0585	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	5	120	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	29	0	0.81	1	0.0407	0.9771	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.81	1	1.0178	FALSE	344	827	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	3	127	MT-ND4	1289	chrM:11048:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	22	0	0.86	1	0.0244	1.0341	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.86	1	1.0585	FALSE	344	827	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	SLC37A1--ABCG1	26	32	SLC37A1	19544	chr21:43979199:+	ABCG1	48498	chr21:43702384:+	ONLY_REF_SPLICE	YES	33	24	0.64	0.71	0.2117	0.2606	{Klijn_CCL:Breast=1},SLC37A1->chr21:43916118-44001550:+,solute_carrier_family_37_member_1,ABCG1->ATP_binding_cassette_subfamily_G_member_1,chr21:43619799-43717354:+	HCC1428_BREAST	0.64	0.71	0.4723	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	27	27	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	15	0	0.78	1	0.2198	0.2198	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.78	1	0.4396	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	TTC39C--LAMA3	31	5	TTC39C	6470	chr18:21644152:+	LAMA3	72360	chr18:21461900:+	ONLY_REF_SPLICE	YES	10	15	0.78	0.71	0.2524	0.0407	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[37707],TTC39C->chr18:21572737-21715574:+,tetratricopeptide_repeat_domain_39C,LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3	HCC1428_BREAST	0.71	0.78	0.2931	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	NGFR--SPAG9	20	35	NGFR	5719	chr17:47584020:+	SPAG9	41203	chr17:49067188:-	ONLY_REF_SPLICE	YES	0	126	1	0.3	0.1628	0.285	{Klijn_CCL:Breast=1},NGFR->Oncogene{Bushman},chr17:47572655-47592379:+,nerve_growth_factor_receptor,SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9	HCC1428_BREAST	0.3	1	0.4478	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	C1orf159--OPRD1	24	7	C1orf159	7717	chr1:1025733:-	OPRD1	18880	chr1:29185466:+	ONLY_REF_SPLICE	YES	31	0	0.5	1	0.1954	0.057	C1orf159->chr1:1017198-1051741:-,chromosome_1_open_reading_frame_159,OPRD1->chr1:29138654-29190208:+,opioid_receptor_delta_1	HCC1428_BREAST	0.5	1	0.2524	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	3	89	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	18	0	0.84	1	0.0244	0.7247	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.84	1	0.7491	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	7	65	MT-CO3	1434	chrM:9640:+	MT-ATP6	4916	chrM:8658:+	INCL_NON_REF_SPLICE	YES	2	18	0.97	0.8	0.057	0.5293	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.8	0.97	0.5863	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	18	21	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	17	0	0.7	1	0.1466	0.171	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.7	1	0.3176	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	12	44	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	7861	0	0.01	1	0.0977	0.3583	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.01	1	0.456	FALSE	328	800	43	304	0	FALSE	ACH-000352
HCC1428_BREAST	NCS1--GPR107	22	1	NCS1	1150	chr9:132935006:+	GPR107	18466	chr9:132837915:+	ONLY_REF_SPLICE	YES	5	134	0.82	0.15	0.1791	0.0081	LOCAL_REARRANGEMENT:+:[32409],NCS1->chr9:132934857-132999583:+,neuronal_calcium_sensor_1,GPR107->G_protein-coupled_receptor_107,chr9:132815705-132902448:+	HCC1428_BREAST	0.15	0.82	0.1872	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	14	28	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	3110	0	0.01	1	0.114	0.228	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.01	1	0.342	FALSE	344	827	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	3	69	MT-ND4	1112	chrM:10871:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	11	0	0.87	1	0.0244	0.5618	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.87	1	0.5862	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	NPM1P24--SET	20	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1628	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1428_BREAST	1	1	0.1628	TRUE	0	0	0	434	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND6--MT-TE	18	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1466	0.057	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1428_BREAST	1	1	0.2036	FALSE	499	1288	110	792	0	FALSE	ACH-000352
HCC1428_BREAST	NGFR--SPAG9	11	35	NGFR	5719	chr17:47584020:+	SPAG9	41206	chr17:49067185:-	INCL_NON_REF_SPLICE	YES	0	131	1	0.26	0.0896	0.285	{Klijn_CCL:Breast=1},NGFR->Oncogene{Bushman},chr17:47572655-47592379:+,nerve_growth_factor_receptor,SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9	HCC1428_BREAST	0.26	1	0.3746	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	5	57	MT-CO3	1159	chrM:9365:+	MT-ATP6	4932	chrM:8674:+	INCL_NON_REF_SPLICE	YES	6	19	0.91	0.77	0.0407	0.4641	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.77	0.91	0.5048	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	6	51	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	7	0.93	0.89	0.0489	0.4153	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.89	0.93	0.4642	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	6	51	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	7	0.93	0.89	0.0489	0.4153	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.89	0.93	0.4642	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	RP11-206L10.11--PLA2G2D	6	50	RP11-206L10.11	4517	chr1:776753:+	PLA2G2D	21380	chr1:20442970:-	ONLY_REF_SPLICE	YES	116	0	0.33	1	0.0489	0.4071	RP11-206L10.11->chr1:762988-794826:+,PLA2G2D->chr1:20438432-20446050:-,phospholipase_A2_group_IID	HCC1428_BREAST	0.33	1	0.456	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	7	44	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	261	0	0.16	1	0.057	0.3583	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.16	1	0.4153	FALSE	344	827	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	11	27	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	17	0	0.69	1	0.0896	0.2198	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.69	1	0.3094	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	3	57	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0244	0.4641	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.98	1	0.4885	FALSE	344	821	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND6--MT-TE	12	21	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0977	0.171	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1428_BREAST	0.94	1	0.2687	FALSE	499	1288	110	792	0	FALSE	ACH-000352
HCC1428_BREAST	RP11-96H19.1--RP11-446N19.1	14	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.114	0.1059	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1428_BREAST	1	1	0.2199	FALSE	515	4851	409	746	0	FALSE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	4	52	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	6	6	0.9	0.9	0.0326	0.4234	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.9	0.9	0.456	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	17	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1384	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	1	1	0.1384	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	NPM1P24--SET	17	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1384	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1428_BREAST	1	1	0.1384	TRUE	0	0	0	434	0	FALSE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	5	47	MT-CO3	1083	chrM:9289:+	MT-ATP6	5173	chrM:8915:+	INCL_NON_REF_SPLICE	YES	1	38	0.98	0.58	0.0407	0.3827	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.58	0.98	0.4234	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	ZNF362--ROR1	16	3	ZNF362	7176	chr1:33747412:+	ROR1	16891	chr1:64474977:+	ONLY_REF_SPLICE	YES	36	0	0.35	1	0.1303	0.0244	ZNF362->chr1:33722146-33766320:+,zinc_finger_protein_362,ROR1->chr1:64239693-64647181:+,receptor_tyrosine_kinase-like_orphan_receptor_1	HCC1428_BREAST	0.35	1	0.1547	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	AC131097.3--AC093642.5	13	13	AC131097.3	2273	chr2:242824786:+	AC093642.5	11670	chr2:243037038:+	ONLY_REF_SPLICE	YES	6	8	0.81	0.76	0.1059	0.1059	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	HCC1428_BREAST	0.76	0.81	0.2118	FALSE	3	20	2	16	0	FALSE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	3	53	MT-CO3	1138	chrM:9344:+	MT-ATP6	5185	chrM:8927:+	INCL_NON_REF_SPLICE	YES	4	47	0.93	0.54	0.0244	0.4315	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.54	0.93	0.4559	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	3	52	MT-CO3	1126	chrM:9332:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	4	23	0.93	0.71	0.0244	0.4234	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.71	0.93	0.4478	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	3	52	MT-CO3	1113	chrM:9319:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	2	1	0.96	0.98	0.0244	0.4234	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.96	0.98	0.4478	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	9	28	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	299	0	0.11	1	0.0733	0.228	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.11	1	0.3013	FALSE	344	827	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	5	44	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	2925	0	0.02	1	0.0407	0.3583	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.02	1	0.399	FALSE	344	827	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	14	8	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	22	0	0.5	1	0.114	0.0651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.5	1	0.1791	FALSE	344	827	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	PDE8A--SLC28A1	15	4	PDE8A	8668	chr15:85620018:+	SLC28A1	42454	chr15:85461755:+	ONLY_REF_SPLICE	YES	9	0	0.68	1	0.1221	0.0326	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[4795],PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A,SLC28A1->chr15:85427885-85518876:+,solute_carrier_family_28_member_1	HCC1428_BREAST	0.68	1	0.1547	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	HIVEP3--HEYL	15	2	HIVEP3	9521	chr1:42166587:-	HEYL	33234	chr1:40098387:-	ONLY_REF_SPLICE	YES	2	9	0.89	0.65	0.1221	0.0163	HIVEP3->Oncogene{Bushman},chr1:41972036-42501596:-,human_immunodeficiency_virus_type_I_enhancer_binding_protein_3,HEYL->chr1:40089825-40105617:-,hes_related_family_bHLH_transcription_factor_with_YRPW_motif-like	HCC1428_BREAST	0.65	0.89	0.1384	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	4	43	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	22	0	0.68	1	0.0326	0.3501	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.68	1	0.3827	FALSE	344	827	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	4	43	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	20	0	0.7	1	0.0326	0.3501	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.7	1	0.3827	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	AP000525.9--LA16c-60G3.6	14	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	14	0	0.53	1	0.114	0.0163	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HCC1428_BREAST	0.53	1	0.1303	TRUE	0	42	0	133	42	FALSE	ACH-000352
HCC1428_BREAST	AC131097.3--AC093642.5	12	9	AC131097.3	2273	chr2:242824786:+	AC093642.5	12811	chr2:243056790:+	ONLY_REF_SPLICE	YES	6	11	0.78	0.66	0.0977	0.0733	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	HCC1428_BREAST	0.66	0.78	0.171	FALSE	2	37	1	16	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	7	28	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	144	0	0.2	1	0.057	0.228	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.2	1	0.285	FALSE	344	827	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	3	43	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	17	0	0.73	1	0.0244	0.3501	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.73	1	0.3745	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	3	43	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	17	0	0.73	1	0.0244	0.3501	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.73	1	0.3745	FALSE	344	827	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND6--MT-TE	3	42	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.0244	0.342	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1428_BREAST	0.94	1	0.3664	FALSE	499	1288	110	792	0	FALSE	ACH-000352
HCC1428_BREAST	HSPBP1--GRK5	13	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1059	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HCC1428_BREAST	1	1	0.1059	TRUE	1	39	0	134	39	FALSE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	5	32	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	NO	1	0	0.97	1	0.0407	0.2606	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.97	1	0.3013	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	12	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.75	1	0.0977	0.0244	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.75	1	0.1221	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	6	27	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	17	0	0.66	1	0.0489	0.2198	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.66	1	0.2687	FALSE	344	827	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	5	31	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	17	0	0.68	1	0.0407	0.2524	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.68	1	0.2931	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	ZYG11A--RP11-335E6.2	10	10	ZYG11A	8974	chr1:53333449:+	RP11-335E6.2	22300	chr1:63628467:+	INCL_NON_REF_SPLICE	YES	6	4	0.77	0.83	0.0814	0.0814	ZYG11A->chr1:53308183-53360670:+,zyg-11_family_member_A,_cell_cycle_regulator,RP11-335E6.2->chr1:63604921-63628824:+	HCC1428_BREAST	0.77	0.83	0.1628	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	ESPNP--NRD1	11	4	ESPNP	4165	chr1:17033783:-	NRD1	19572	chr1:52306186:-	ONLY_REF_SPLICE	YES	5	166	0.75	0.08	0.0896	0.0326	ESPNP->chr1:17013834-17046652:-,espin_pseudogene,NRD1->chr1:52254863-52344477:-	HCC1428_BREAST	0.08	0.75	0.1222	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-TA--MT-TC	11	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0896	0.0326	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1428_BREAST	1	1	0.1222	FALSE	462	80	0	856	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	5	27	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	17	0	0.65	1	0.0407	0.2198	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.65	1	0.2605	FALSE	344	827	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	SLC9A2--IL1RL2	11	3	SLC9A2	4146	chr2:103281809:+	IL1RL2	31863	chr2:102842358:+	ONLY_REF_SPLICE	YES	15	0	0.48	1	0.0896	0.0244	SLC9A2->Oncogene{Bushman},chr2:103236166-103327777:+,solute_carrier_family_9_member_A2,IL1RL2->chr2:102803433-102856462:+,interleukin_1_receptor_like_2	HCC1428_BREAST	0.48	1	0.114	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-ND6--MT-TE	4	29	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0326	0.2361	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1428_BREAST	0.94	1	0.2687	FALSE	499	1288	110	792	0	FALSE	ACH-000352
HCC1428_BREAST	PLEKHF2--NDUFAF6	10	4	PLEKHF2	1227	chr8:96146258:+	NDUFAF6	20672	chr8:96044223:+	ONLY_REF_SPLICE	YES	104	80	0.12	0.15	0.0814	0.0326	LOCAL_REARRANGEMENT:+:[17349],PLEKHF2->chr8:96146032-96168912:+,pleckstrin_homology_and_FYVE_domain_containing_2,NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+	HCC1428_BREAST	0.12	0.15	0.114	TRUE	0	1	0	1	1	TRUE	ACH-000352
HCC1428_BREAST	LRSAM1--GARNL3	10	1	LRSAM1	21987	chr9:130255176:+	GARNL3	53309	chr9:130111203:+	ONLY_REF_SPLICE	YES	35	10	0.24	0.52	0.0814	0.0081	LOCAL_REARRANGEMENT:+:[57826],LRSAM1->chr9:130213765-130265780:+,leucine_rich_repeat_and_sterile_alpha_motif_containing_1,GARNL3->GTPase_activating_Rap/RanGAP_domain_like_3,chr9:129986544-130155939:+	HCC1428_BREAST	0.24	0.52	0.0895	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	3	28	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	6	0	0.84	1	0.0244	0.228	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.84	1	0.2524	FALSE	344	821	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	NRIP1--AF127936.7	9	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.37	1	0.0733	0.0326	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1428_BREAST	0.37	1	0.1059	FALSE	125	705	46	456	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	3	27	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	16	0	0.65	1	0.0244	0.2198	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.65	1	0.2442	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	3	26	MT-ND4	1114	chrM:10873:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12	0	0.71	1	0.0244	0.2117	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.71	1	0.2361	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	NRIP1--AF127936.7	8	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	25	0	0.36	1	0.0651	0.0489	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1428_BREAST	0.36	1	0.114	FALSE	164	806	69	479	0	FALSE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	8	5	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	4	1	0.76	0.93	0.0651	0.0407	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.76	0.93	0.1058	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	SLC37A1--ABCG1	7	9	SLC37A1	18412	chr21:43974252:+	ABCG1	47447	chr21:43697005:+	ONLY_REF_SPLICE	YES	76	24	0.17	0.4	0.057	0.0733	{Klijn_CCL:Breast=1},SLC37A1->chr21:43916118-44001550:+,solute_carrier_family_37_member_1,ABCG1->ATP_binding_cassette_subfamily_G_member_1,chr21:43619799-43717354:+	HCC1428_BREAST	0.17	0.4	0.1303	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	AC006435.1--TET1	9	0	AC006435.1	2043	chr17:2317689:-	TET1	7377	chr10:70331974:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0733	0	AC006435.1->chr17:2310279-2318731:-,TET1->Oncogene{Bushman},chr10:70320413-70454239:+,tet_methylcytosine_dioxygenase_1	HCC1428_BREAST	1	1	0.0733	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	6	12	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	4	1	0.82	0.95	0.0489	0.0977	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.82	0.95	0.1466	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	6	12	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	1	0.95	0.95	0.0489	0.0977	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.95	0.95	0.1466	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0733	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1428_BREAST	1	1	0.0733	FALSE	462	80	0	856	0	FALSE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	4	18	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	NO	0	2	1	0.92	0.0326	0.1466	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.92	1	0.1792	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	RP11-622K12.1--ZNF252P	8	1	RP11-622K12.1	2468	chrX:56758632:+	ZNF252P	9378	chr8:146225155:-	ONLY_REF_SPLICE	YES	114	3	0.07	0.75	0.0651	0.0081	RP11-622K12.1->chrX:56755692-56844813:+,ZNF252P->chr8:146198975-146228281:-,zinc_finger_protein_252,_pseudogene	HCC1428_BREAST	0.07	0.75	0.0732	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	8	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	1	1	0.0651	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	4	16	MT-CO3	1092	chrM:9298:+	MT-ATP6	5414	chrM:9156:+	INCL_NON_REF_SPLICE	YES	1	1	0.95	0.95	0.0326	0.1303	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.95	0.95	0.1629	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	7	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.057	0.0326	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	1	1	0.0896	FALSE	344	821	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	4	14	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	6	0	0.75	1	0.0326	0.114	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.75	1	0.1466	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	RP11-206L10.11--PLA2G2D	5	10	RP11-206L10.11	1168	chr1:763155:+	PLA2G2D	21380	chr1:20442970:-	ONLY_REF_SPLICE	YES	32	0	0.32	1	0.0407	0.0814	RP11-206L10.11->chr1:762988-794826:+,PLA2G2D->chr1:20438432-20446050:-,phospholipase_A2_group_IID	HCC1428_BREAST	0.32	1	0.1221	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	RP11-680G10.1--GSE1	7	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	15	1	0.38	0.057	0.0163	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1428_BREAST	0.38	1	0.0733	TRUE	458	1351	185	561	0	FALSE	ACH-000352
HCC1428_BREAST	RP11-680G10.1--GSE1	7	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	71	1	0.11	0.057	0.0163	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1428_BREAST	0.11	1	0.0733	TRUE	465	1949	224	605	0	FALSE	ACH-000352
HCC1428_BREAST	TLN2--RP11-1069G10.2	5	9	TLN2	2310	chr15:62745940:+	RP11-1069G10.2	79922	chr15:63190850:+	ONLY_REF_SPLICE	YES	2	3	0.88	0.82	0.0407	0.0733	NEIGHBORS[51181],TLN2->chr15:62682725-63136830:+,talin_2,RP11-1069G10.2->chr15:63188011-63191742:+	HCC1428_BREAST	0.82	0.88	0.114	FALSE	0	0	0	1	0	FALSE	ACH-000352
HCC1428_BREAST	AL035610.2--AP001604.3	7	0	AL035610.2	7972	chr21:29535921:-	AP001604.3	16956	chr21:28771893:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.057	0	AL035610.2->chr21:29488413-29600986:-,AP001604.3->chr21:28731204-28820898:-	HCC1428_BREAST	1	1	0.057	TRUE	0	2	0	3	2	TRUE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	3	16	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	1	1	0.95	0.95	0.0244	0.1303	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.95	0.95	0.1547	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND6--MT-TE	3	15	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0.1221	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1428_BREAST	1	1	0.1465	FALSE	499	1288	110	792	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	6	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	1	1	0.0489	FALSE	344	821	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	4	8	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	17	0	0.41	1	0.0326	0.0651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.41	1	0.0977	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	REV3L--RPL28	6	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	HCC1428_BREAST	1	1	0.0489	TRUE	22	156	2	142	0	FALSE	ACH-000352
HCC1428_BREAST	RP11-662B19.2--WDR37	6	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0489	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	HCC1428_BREAST	1	1	0.0489	TRUE	31	42	1	25	0	FALSE	ACH-000352
HCC1428_BREAST	ESR1--CCDC170	1	19	ESR1	2242	chr6:152011799:+	CCDC170	43783	chr6:151936578:+	ONLY_REF_SPLICE	YES	18	5	0.53	0.8	0.0081	0.1547	LOCAL_REARRANGEMENT:+:[35498],ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,CCDC170->chr6:151815165-151942328:+,coiled-coil_domain_containing_170	HCC1428_BREAST	0.53	0.8	0.1628	TRUE	0	1	0	1	1	TRUE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	5	2	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	6	0	0.54	1	0.0407	0.0163	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.54	1	0.057	FALSE	344	821	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	RP11-96H19.1--RP11-446N19.1	2	14	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0.114	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1428_BREAST	1	1	0.1303	FALSE	275	511	55	178	0	FALSE	ACH-000352
HCC1428_BREAST	RP11-96H19.1--RP11-446N19.1	2	14	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0.114	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1428_BREAST	1	1	0.1303	FALSE	407	2205	196	549	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND6--MT-TE	5	1	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0.0081	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1428_BREAST	1	1	0.0488	FALSE	499	1288	110	792	0	FALSE	ACH-000352
HCC1428_BREAST	RNF187--OBSCN	5	1	RNF187	2992	chr1:228676753:+	OBSCN	84991	chr1:228540652:+	ONLY_REF_SPLICE	YES	130	15	0.04	0.29	0.0407	0.0081	RNF187->chr1:228674762-228683467:+,ring_finger_protein_187,OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF	HCC1428_BREAST	0.04	0.29	0.0488	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	RP11-96H19.1--RP11-446N19.1	2	13	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0.1059	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1428_BREAST	1	1	0.1222	FALSE	467	2173	244	435	0	FALSE	ACH-000352
HCC1428_BREAST	YIPF1--ERI3	5	1	YIPF1	10570	chr1:54325729:-	ERI3	31007	chr1:44687312:-	ONLY_REF_SPLICE	YES	79	165	0.07	0.04	0.0407	0.0081	YIPF1->Yip1_domain_family_member_1,chr1:54317392-54356407:-,ERI3->ERI1_exoribonuclease_family_member_3,chr1:44686742-44820932:-	HCC1428_BREAST	0.04	0.07	0.0488	TRUE	0	0	0	1	0	FALSE	ACH-000352
HCC1428_BREAST	HSPBP1--GRK5	5	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HCC1428_BREAST	1	1	0.0407	TRUE	1	39	0	134	39	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	3	8	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	18	0	0.38	1	0.0244	0.0651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.38	1	0.0895	FALSE	344	826	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	3	8	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	16	0	0.41	1	0.0244	0.0651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0.41	1	0.0895	FALSE	344	827	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	LUZP1--RP5-952N6.1	4	3	LUZP1	2577	chr1:23495259:-	RP5-952N6.1	25946	chr1:71250869:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0326	0.0244	LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1,RP5-952N6.1->chr1:71172136-71252151:+	HCC1428_BREAST	0.88	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	4	3	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	7	0	0.5	1	0.0326	0.0244	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.5	1	0.057	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	DLG5--PRPF6	4	1	DLG5	26134	chr10:79570852:-	PRPF6	43804	chr20:62624760:+	ONLY_REF_SPLICE	YES	127	318	0.04	0.02	0.0326	0.0081	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},DLG5->chr10:79550549-79686378:-,discs_large_homolog_5,PRPF6->chr20:62612488-62664453:+,pre-mRNA_processing_factor_6	HCC1428_BREAST	0.02	0.04	0.0407	TRUE	0	0	0	1	0	FALSE	ACH-000352
HCC1428_BREAST	FRS2--LYZ	4	1	FRS2	1182	chr12:69864310:+	LYZ	24912	chr12:69743888:+	ONLY_REF_SPLICE	YES	129	0	0.04	1	0.0326	0.0081	GTEx&tcga_normals:6/3694=0.16%,YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,LYZ->chr12:69742121-69748014:+,lysozyme	HCC1428_BREAST	0.04	1	0.0407	TRUE	0	2	0	1	1	TRUE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	3	5	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	7	0	0.53	1	0.0244	0.0407	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.53	1	0.0651	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	HSPBP1--GRK5	4	0	HSPBP1	1855	chr19:55790895:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HCC1428_BREAST	1	1	0.0326	TRUE	1	39	0	134	39	FALSE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	1	1	0.0326	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	1	1	0.0326	FALSE	344	821	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	4	0	MT-ND4	1033	chrM:10792:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0326	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	1	1	0.0326	FALSE	344	821	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	USP3--RP11-321G12.1	4	0	USP3	1237	chr15:63797029:+	RP11-321G12.1	33906	chr15:63690586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0326	0	LOCAL_REARRANGEMENT:+:[67446],USP3->Oncogene{Bushman},chr15:63796793-63886839:+,ubiquitin_specific_peptidase_3,RP11-321G12.1->chr15:63682335-63729347:+	HCC1428_BREAST	1	1	0.0326	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	3	2	MT-CO3	1158	chrM:9364:+	MT-ATP6	5461	chrM:9203:+	INCL_NON_REF_SPLICE	YES	6	0	0.45	1	0.0244	0.0163	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.45	1	0.0407	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	MT-CO3--MT-ATP6	3	2	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	6	0	0.45	1	0.0244	0.0163	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1428_BREAST	0.45	1	0.0407	FALSE	189	492	56	216	0	FALSE	ACH-000352
HCC1428_BREAST	CALM3--MT-ND4L	3	1	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	825	0	0	1	0.0244	0.0081	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	0	1	0.0325	FALSE	1	1	0	107	0	FALSE	ACH-000352
HCC1428_BREAST	DNAJC6--PIK3R3	2	5	DNAJC6	2273	chr1:65720332:+	PIK3R3	34450	chr1:46546422:-	ONLY_REF_SPLICE	YES	15	72	0.32	0.09	0.0163	0.0407	DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+,PIK3R3->chr1:46505812-46642160:-,phosphoinositide-3-kinase_regulatory_subunit_3	HCC1428_BREAST	0.09	0.32	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	ELL2--AC008592.7	3	1	ELL2	2545	chr5:95278706:-	AC008592.7	22763	chr5:95306000:-	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0244	0.0081	LOCAL_REARRANGEMENT:-:[2928],ELL2->chr5:95220802-95297775:-,elongation_factor_for_RNA_polymerase_II_2,AC008592.7->chr5:95300703-95322015:-	HCC1428_BREAST	0.57	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	MT-ND6--MT-TE	3	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0.0081	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1428_BREAST	1	1	0.0325	FALSE	499	1288	110	792	0	FALSE	ACH-000352
HCC1428_BREAST	PDE8A--SLC28A1	3	1	PDE8A	7799	chr15:85619149:+	SLC28A1	42480	chr15:85461781:+	INCL_NON_REF_SPLICE	YES	5	0	0.44	1	0.0244	0.0081	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[4795],PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A,SLC28A1->chr15:85427885-85518876:+,solute_carrier_family_28_member_1	HCC1428_BREAST	0.44	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	RP11-123O10.4--GRIP1	2	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0.0407	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1428_BREAST	1	1	0.057	FALSE	93	270	15	244	0	FALSE	ACH-000352
HCC1428_BREAST	RP11-206L10.11--PLA2G2A	2	5	RP11-206L10.11	2270	chr1:764484:+	PLA2G2A	21841	chr1:20305372:-	ONLY_REF_SPLICE	YES	134	0	0.05	1	0.0163	0.0407	RP11-206L10.11->chr1:762988-794826:+,PLA2G2A->Oncogene{Bushman},chr1:20301925-20306932:-,phospholipase_A2_group_IIA	HCC1428_BREAST	0.05	1	0.057	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	HSPBP1--GRK5	3	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HCC1428_BREAST	1	1	0.0244	TRUE	1	39	0	134	39	FALSE	ACH-000352
HCC1428_BREAST	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1428_BREAST	1	1	0.0244	FALSE	344	821	44	306	0	FALSE	ACH-000352
HCC1428_BREAST	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1428_BREAST	1	1	0.0244	TRUE	0	0	0	434	0	FALSE	ACH-000352
HCC1428_BREAST	PLXDC1--TAF13	3	0	PLXDC1	27520	chr17:37222840:-	TAF13	38540	chr1:109605627:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0244	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCC1428_BREAST	1	1	0.0244	TRUE	7	10	0	216	0	FALSE	ACH-000352
HCC1428_BREAST	SEPT9--METAP1	3	0	SEPT9	30894	chr17:75478417:+	METAP1	62502	chr4:99978904:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1	HCC1428_BREAST	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	NGFR--SPAG9	2	3	NGFR	4359	chr17:47579566:+	SPAG9	41158	chr17:49067233:-	ONLY_REF_SPLICE	YES	52	146	0.09	0.03	0.0163	0.0244	{Klijn_CCL:Breast=1},NGFR->Oncogene{Bushman},chr17:47572655-47592379:+,nerve_growth_factor_receptor,SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9	HCC1428_BREAST	0.03	0.09	0.0407	TRUE	0	0	0	1	0	FALSE	ACH-000352
HCC1428_BREAST	MINOS1--HS2ST1	1	6	MINOS1	1127	chr1:19923603:+	HS2ST1	19301	chr1:87424123:+	ONLY_REF_SPLICE	YES	240	50	0.03	0.12	0.0081	0.0489	MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1	HCC1428_BREAST	0.03	0.12	0.057	TRUE	0	0	0	1	0	FALSE	ACH-000352
HCC1428_BREAST	SRPK1--SLC26A8	2	1	SRPK1	1875	chr6:35888245:-	SLC26A8	44806	chr6:35912117:-	ONLY_REF_SPLICE	NO	43	0	0.07	1	0.0163	0.0081	LOCAL_REARRANGEMENT:-:[22172],SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-,SLC26A8->chr6:35911291-35992645:-,solute_carrier_family_26_member_8	HCC1428_BREAST	0.07	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	AC131097.3--AC093642.5	2	0	AC131097.3	2273	chr2:242824786:+	AC093642.5	18598	chr2:243080935:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	HCC1428_BREAST	1	1	0.0163	FALSE	0	1	0	3	0	FALSE	ACH-000352
HCC1428_BREAST	DNAJC6--PIK3R3	2	0	DNAJC6	1085	chr1:65713986:+	PIK3R3	34450	chr1:46546422:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+,PIK3R3->chr1:46505812-46642160:-,phosphoinositide-3-kinase_regulatory_subunit_3	HCC1428_BREAST	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	DOCK1--BCCIP	2	0	DOCK1	30893	chr10:129055693:+	BCCIP	70361	chr10:127529824:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,BCCIP->BRCA2_and_CDKN1A_interacting_protein,chr10:127512115-127542264:+	HCC1428_BREAST	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	ESPNP--NRD1	2	0	ESPNP	3561	chr1:17034387:-	NRD1	19572	chr1:52306186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	ESPNP->chr1:17013834-17046652:-,espin_pseudogene,NRD1->chr1:52254863-52344477:-	HCC1428_BREAST	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	HCC1428_BREAST	1	1	0.0163	TRUE	0	0	0	11	0	TRUE	ACH-000352
HCC1428_BREAST	PVT1--MYC	2	0	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	HCC1428_BREAST	1	1	0.0163	TRUE	3	14	0	24	0	FALSE	ACH-000352
HCC1428_BREAST	RIOK2--RHOBTB3	2	0	RIOK2	1135	chr5:96518830:-	RHOBTB3	24554	chr5:95084037:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	RIOK2->RIO_kinase_2,chr5:96496571-96518964:-,RHOBTB3->Rho_related_BTB_domain_containing_3,chr5:95049226-95160087:+	HCC1428_BREAST	1	1	0.0163	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0163	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1428_BREAST	1	1	0.0163	TRUE	62	24	1	171	0	FALSE	ACH-000352
HCC1428_BREAST	LUZP1--RP5-952N6.1	1	3	LUZP1	2577	chr1:23495259:-	RP5-952N6.1	22529	chr1:71177740:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0081	0.0244	LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1,RP5-952N6.1->chr1:71172136-71252151:+	HCC1428_BREAST	0.8	1	0.0325	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	RNF187--OBSCN	1	3	RNF187	2992	chr1:228676753:+	OBSCN	83861	chr1:228539022:+	ONLY_REF_SPLICE	YES	130	7	0.03	0.36	0.0081	0.0244	RNF187->chr1:228674762-228683467:+,ring_finger_protein_187,OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF	HCC1428_BREAST	0.03	0.36	0.0325	TRUE	0	0	0	1	0	FALSE	ACH-000352
HCC1428_BREAST	FRS2--LYZ	1	1	FRS2	6634	chr12:69925836:+	LYZ	24912	chr12:69743888:+	ONLY_REF_SPLICE	YES	141	0	0.01	1	0.0081	0.0081	GTEx&tcga_normals:6/3694=0.16%,YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,LYZ->chr12:69742121-69748014:+,lysozyme	HCC1428_BREAST	0.01	1	0.0162	FALSE	0	2	0	1	2	FALSE	ACH-000352
HCC1428_BREAST	FRS2--LYZ	1	1	FRS2	2243	chr12:69874139:+	LYZ	24912	chr12:69743888:+	ONLY_REF_SPLICE	YES	196	0	0.01	1	0.0081	0.0081	GTEx&tcga_normals:6/3694=0.16%,YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,LYZ->chr12:69742121-69748014:+,lysozyme	HCC1428_BREAST	0.01	1	0.0162	FALSE	0	0	0	1	0	FALSE	ACH-000352
HCC1428_BREAST	GNAI3--SYPL2	1	1	GNAI3	1228	chr1:110091460:+	SYPL2	14710	chr1:110018203:+	ONLY_REF_SPLICE	YES	246	2	0.01	0.5	0.0081	0.0081	LOCAL_REARRANGEMENT:+:[66474],GNAI3->G_protein_subunit_alpha_i3,chr1:110091233-110136975:+,SYPL2->chr1:110009180-110024759:+,synaptophysin_like_2	HCC1428_BREAST	0.01	0.5	0.0162	FALSE	0	0	0	1	0	FALSE	ACH-000352
HCC1428_BREAST	HAUS4--PSMB5	1	1	HAUS4	3849	chr14:23421537:-	PSMB5	13346	chr14:23502883:-	ONLY_REF_SPLICE	NO	63	879	0.03	0	0.0081	0.0081	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_REARRANGEMENT:-:[59382],HAUS4->HAUS_augmin_like_complex_subunit_4,chr14:23415437-23426370:-,PSMB5->chr14:23485752-23504439:-,proteasome_subunit_beta_5	HCC1428_BREAST	0	0.03	0.0162	FALSE	0	0	0	2	0	FALSE	ACH-000352
HCC1428_BREAST	PDE8A--SLC28A1	1	1	PDE8A	8668	chr15:85620018:+	SLC28A1	43535	chr15:85464220:+	ONLY_REF_SPLICE	YES	9	0	0.18	1	0.0081	0.0081	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[4795],PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A,SLC28A1->chr15:85427885-85518876:+,solute_carrier_family_28_member_1	HCC1428_BREAST	0.18	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	PDE8A--SLC28A1	1	1	PDE8A	6742	chr15:85610435:+	SLC28A1	42454	chr15:85461755:+	ONLY_REF_SPLICE	YES	9	0	0.18	1	0.0081	0.0081	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[4795],PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A,SLC28A1->chr15:85427885-85518876:+,solute_carrier_family_28_member_1	HCC1428_BREAST	0.18	1	0.0162	TRUE	0	0	0	1	0	TRUE	ACH-000352
HCC1428_BREAST	RP11-108K3.1--GLDN	1	1	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0081	0.0081	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	HCC1428_BREAST	1	1	0.0162	FALSE	0	14	0	30	0	FALSE	ACH-000352
HCC1428_BREAST	RP11-108K3.1--GLDN	1	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0081	0.0081	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	HCC1428_BREAST	1	1	0.0162	FALSE	0	30	1	55	0	FALSE	ACH-000352
HCC1428_BREAST	TRPS1--EIF3H	1	1	TRPS1	4117	chr8:116680772:-	EIF3H	36974	chr8:117671219:-	ONLY_REF_SPLICE	NO	89	1548	0.02	0	0.0081	0.0081	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	HCC1428_BREAST	0	0.02	0.0162	FALSE	0	13	0	1	1	FALSE	ACH-000352
HCC1428_BREAST	TRPS1--EIF3H	1	1	TRPS1	4117	chr8:116680772:-	EIF3H	33560	chr8:117738411:-	ONLY_REF_SPLICE	NO	89	1449	0.02	0	0.0081	0.0081	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	HCC1428_BREAST	0	0.02	0.0162	FALSE	0	11	0	2	0	FALSE	ACH-000352
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF3--PBX1	1076	356	TCF3	13408	chr19:1619110:-	PBX1	46216	chr1:164761731:+	ONLY_REF_SPLICE	YES	605	0	0.7	1	10.8841	3.6011	Cosmic{samples=197,mutations=26,papers=2},Mitelman{ALL=2,BL=2},chimerdb_pubmed{childhood preBcell acute lymphoblastic leukemia(ALL),Bcell precursor acute lymphoblastic leukemia,preBcell acute lymphoblastic leukemia,acute lymphoblastoid leukemia (ALL),acute lymphoblastic leukemia,Acute leukemia,acute lymphoblastic leukemia (ALL),lymphoma,acute lymphoblastic leukaemias (ALL),CML, ALL,childhood preB acute lymphoblastic leukemia (ALL),severalleukaemia,pediatric preBcell leukemia,acute lymphoblastic eukemia/lymphoma,Acute lymphoblastic leukaemia(ALL),leukemia,preB acute lymphoblastic leukemia (ALL),pediatric preB cell leukemia,acute leukemia,acute lymphoblastic leukemias,preB acute lymphoblastoid leukemias (ALL),acute lymphoblastic leukaemia (ALL),preB acute lymphoblastic leukemia, acute lymphoblastic leukemia (ALL),Several human leukemias,preBcell acute lymphocytic leukemia, acute myeloid leukemia},TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	1	14.4852	TRUE	0	0	0	4	0	TRUE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	112	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1329	0.3035	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.4364	TRUE	508	994	45	981	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	59	28	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	26	59	0.77	0.6	0.5968	0.2832	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.77	0.88	TRUE	181	1564	124	196	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	64	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	181	11	0.27	0.86	0.6474	0.0202	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.86	0.6676	TRUE	519	3926	326	965	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	58	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5867	0.0809	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6676	FALSE	416	2512	207	587	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	42	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4248	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4248	TRUE	0	0	0	518	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	32	5	PTMA	6054	chr2:232576687:+	ANP32B	17703	chr9:100773556:+	INCL_NON_REF_SPLICE	YES	5881	1268	0.01	0.03	0.3237	0.0506	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.3743	TRUE	0	0	0	4	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	25	1	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1296	1	0.02	0.2529	0.0101	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.263	FALSE	101	855	57	72	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	23	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2327	0.0303	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.263	FALSE	462	80	0	856	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC023481.1--LMCD1-AS1	17	5	AC023481.1	1799	chr3:8407280:-	LMCD1-AS1	13416	chr3:8264406:-	ONLY_REF_SPLICE	YES	32	0	0.41	1	0.172	0.0506	NEIGHBORS_OVERLAP:-:-:[1685],AC023481.1->chr3:8406393-8408078:-,LMCD1-AS1->LMCD1_antisense_RNA_1_(head_to_head),chr3:7994492-8653610:-	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	1	0.2226	FALSE	0	0	0	2	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	16	7	PTMA	6593	chr2:232577226:+	ANP32B	17795	chr9:100773648:+	INCL_NON_REF_SPLICE	YES	5756	949	0	0.02	0.1618	0.0708	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.2326	TRUE	0	0	0	4	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1618	0.0101	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1719	FALSE	499	1288	110	792	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	13	6	PTMA	6060	chr2:232576693:+	ANP32B	17709	chr9:100773562:+	INCL_NON_REF_SPLICE	YES	6338	1239	0	0.02	0.1315	0.0607	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.1922	TRUE	0	0	0	4	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	12	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	8	1	0.64	0.1214	0.0202	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.1416	TRUE	458	1351	185	561	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	12	1	PTMA	6054	chr2:232576687:+	ANP32B	18847	chr9:100774731:+	INCL_NON_REF_SPLICE	YES	5881	665	0	0.02	0.1214	0.0101	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.1315	TRUE	0	0	0	3	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	11	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10827	14082	0	0	0.1113	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1214	FALSE	183	104	9	328	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.091	0.0101	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1011	FALSE	499	1288	110	792	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF3--PBX1	8	3	TCF3	10234	chr19:1622396:-	PBX1	46419	chr1:164761934:+	INCL_NON_REF_SPLICE	YES	443	218	0.02	0.05	0.0809	0.0303	Cosmic{samples=197,mutations=26,papers=2},Mitelman{ALL=2,BL=2},chimerdb_pubmed{childhood preBcell acute lymphoblastic leukemia(ALL),Bcell precursor acute lymphoblastic leukemia,preBcell acute lymphoblastic leukemia,acute lymphoblastoid leukemia (ALL),acute lymphoblastic leukemia,Acute leukemia,acute lymphoblastic leukemia (ALL),lymphoma,acute lymphoblastic leukaemias (ALL),CML, ALL,childhood preB acute lymphoblastic leukemia (ALL),severalleukaemia,pediatric preBcell leukemia,acute lymphoblastic eukemia/lymphoma,Acute lymphoblastic leukaemia(ALL),leukemia,preB acute lymphoblastic leukemia (ALL),pediatric preB cell leukemia,acute leukemia,acute lymphoblastic leukemias,preB acute lymphoblastoid leukemias (ALL),acute lymphoblastic leukaemia (ALL),preB acute lymphoblastic leukemia, acute lymphoblastic leukemia (ALL),Several human leukemias,preBcell acute lymphocytic leukemia, acute myeloid leukemia},TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.05	0.1112	TRUE	0	0	0	4	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC023481.1--LMCD1-AS1	8	2	AC023481.1	1799	chr3:8407280:-	LMCD1-AS1	15989	chr3:8236760:-	ONLY_REF_SPLICE	YES	32	0	0.24	1	0.0809	0.0202	NEIGHBORS_OVERLAP:-:-:[1685],AC023481.1->chr3:8406393-8408078:-,LMCD1-AS1->LMCD1_antisense_RNA_1_(head_to_head),chr3:7994492-8653610:-	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.1011	FALSE	0	0	0	1	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0809	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0809	FALSE	13	9	0	364	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	8	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0809	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0809	FALSE	351	233	23	137	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	3	20	MT-ND5	2745	chrM:14081:+	MT-ND4	5875	chrM:10822:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0.2023	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2326	FALSE	28	25	1	22	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TPH2--TRHDE	7	1	TPH2	20489	chr12:72469488:+	TRHDE	33341	chr12:72499428:+	ONLY_REF_SPLICE	YES	6	0	0.57	1	0.0708	0.0101	NEIGHBORS_OVERLAP:+:+:[99352],TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.0809	FALSE	0	0	0	1	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	7	0	PTMA	6024	chr2:232576657:+	ANP32B	19883	chr9:100777658:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0708	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0708	TRUE	0	0	0	3	0	TRUE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0.0607	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1113	FALSE	499	1288	110	792	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	6	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	62	0	0.11	1	0.0607	0.0202	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0809	FALSE	125	705	46	456	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	22	0	0.31	1	0.0506	0.0506	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	1	0.1012	FALSE	499	1288	110	792	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP1-34H18.1--NAV3	6	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0607	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0607	TRUE	254	575	65	124	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	5	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	108	0	0.06	1	0.0506	0.0202	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0708	FALSE	164	806	69	479	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	4	6	PTMA	6060	chr2:232576693:+	ANP32B	17742	chr9:100773595:+	INCL_NON_REF_SPLICE	YES	6338	1149	0	0.01	0.0405	0.0607	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1012	TRUE	0	0	0	4	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	3	9	MT-ND5	2775	chrM:14111:+	MT-ND4	6271	chrM:11218:+	INCL_NON_REF_SPLICE	YES	0	10022	1	0	0.0303	0.091	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1213	FALSE	47	27	1	24	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	4	5	PTMA	6056	chr2:232576689:+	ANP32B	17732	chr9:100773585:+	INCL_NON_REF_SPLICE	YES	6067	1040	0	0.01	0.0405	0.0506	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0911	FALSE	0	0	0	4	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	5	1	PTMA	6042	chr2:232576675:+	ANP32B	18817	chr9:100774701:+	INCL_NON_REF_SPLICE	YES	5729	1048	0	0.01	0.0506	0.0101	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0607	FALSE	0	0	0	3	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0506	FALSE	13	9	0	364	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	0	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0506	FALSE	182	97	9	327	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0506	FALSE	183	104	9	328	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	3	MT-ATP6	1477	chrM:9003:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	6956	11677	0	0	0.0405	0.0303	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0708	FALSE	183	104	9	328	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	3	7	MT-ND5	2172	chrM:13508:+	MT-ND4	6088	chrM:11035:+	INCL_NON_REF_SPLICE	NO	2638	7614	0	0	0.0303	0.0708	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1011	FALSE	47	29	1	24	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	3	7	MT-ND5	2718	chrM:14054:+	MT-ND4	6199	chrM:11146:+	INCL_NON_REF_SPLICE	YES	4	10310	0.71	0	0.0303	0.0708	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.71	0.1011	FALSE	47	27	1	24	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0.0303	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0708	FALSE	462	80	0	856	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	3	7	PTMA	6065	chr2:232576698:+	ANP32B	17741	chr9:100773594:+	INCL_NON_REF_SPLICE	YES	6468	1125	0	0.01	0.0303	0.0708	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1011	TRUE	0	0	0	4	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	24	1	0.2	0.0405	0.0202	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.0607	TRUE	465	1949	224	605	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGDIA--MT-CO3	4	1	ARHGDIA	3700	chr17:79826583:-	MT-CO3	7752	chrM:9272:+	INCL_NON_REF_SPLICE	YES	148	1	0.03	0.83	0.0405	0.0101	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.83	0.0506	FALSE	0	0	0	6	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	4	1	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	2170	1	0	0.0405	0.0101	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0506	FALSE	101	855	57	72	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	4	1	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	1262	1	0	0.0405	0.0101	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0506	FALSE	101	855	57	72	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	4	1	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	3	8	0.62	0.38	0.0405	0.0101	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.62	0.0506	FALSE	0	9	0	55	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	8	0.62	0.38	0.0405	0.0101	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.62	0.0506	FALSE	16	356	14	466	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0405	TRUE	0	0	0	81	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	4	0	MT-ND5	2303	chrM:13639:+	MT-ND4	6911	chrM:11858:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0405	FALSE	47	29	1	23	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0.0405	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0708	FALSE	462	80	0	856	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-15B17.1--MT-ATP8	4	0	RP11-15B17.1	1238	chr4:100871400:+	MT-ATP8	12279	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0405	0	RP11-15B17.1->chr4:100871163-101116256:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0405	FALSE	0	0	0	5	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YIPF6--BAZ1B	4	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0405	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0405	TRUE	1	23	1	24	8	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	3	3	PTMA	6535	chr2:232577168:+	ANP32B	18845	chr9:100774729:+	INCL_NON_REF_SPLICE	YES	5250	717	0	0.01	0.0303	0.0303	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0606	FALSE	0	0	0	3	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1177	chrM:8703:+	MT-CO1	4735	chrM:5957:+	INCL_NON_REF_SPLICE	YES	11666	0	0	1	0.0303	0.0202	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0505	FALSE	182	97	9	327	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ND4	3	2	MT-ND5	2718	chrM:14054:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	NO	4	4898	0.56	0	0.0303	0.0202	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.56	0.0505	FALSE	47	27	1	24	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0303	0.0202	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0505	FALSE	515	4851	409	746	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC023481.1--LMCD1-AS1	3	1	AC023481.1	1799	chr3:8407280:-	LMCD1-AS1	19245	chr3:8033989:-	ONLY_REF_SPLICE	YES	32	0	0.11	1	0.0303	0.0101	NEIGHBORS_OVERLAP:-:-:[1685],AC023481.1->chr3:8406393-8408078:-,LMCD1-AS1->LMCD1_antisense_RNA_1_(head_to_head),chr3:7994492-8653610:-	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0404	FALSE	0	0	0	2	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	3	1	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	55	5	0.07	0.44	0.0303	0.0101	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.44	0.0404	FALSE	351	233	23	137	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-CO1	3	1	MT-ND4	2048	chrM:11807:+	MT-CO1	6021	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8008	14081	0	0	0.0303	0.0101	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0404	FALSE	19	92	11	16	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-CO1	3	1	MT-ND4	1910	chrM:11669:+	MT-CO1	5892	chrM:6417:+	INCL_NON_REF_SPLICE	YES	8541	12112	0	0	0.0303	0.0101	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0404	FALSE	19	92	11	16	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	3	1	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	2	1231	0.67	0	0.0303	0.0101	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.67	0.0404	FALSE	101	855	57	72	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	3	1	PTMA	6054	chr2:232576687:+	ANP32B	19871	chr9:100777646:+	INCL_NON_REF_SPLICE	NO	5881	510	0	0.01	0.0303	0.0101	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0404	FALSE	0	0	0	3	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-15B17.1--MT-ATP8	3	1	RP11-15B17.1	1239	chr4:100871401:+	MT-ATP8	12223	chrM:8412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0.0101	RP11-15B17.1->chr4:100871163-101116256:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0404	FALSE	0	0	0	5	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	8	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	33	59	0.21	0.13	0.0101	0.0809	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.21	0.091	TRUE	105	90	7	93	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAEA--CTBP1	3	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0303	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0303	TRUE	3	14	2	43	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0303	FALSE	183	104	9	328	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0303	FALSE	183	104	9	328	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PABPC1--TKT	3	0	PABPC1	1996	chr8:101734042:-	TKT	18445	chr3:53289981:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,TKT->chr3:53258723-53290068:-,transketolase	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0303	TRUE	0	0	0	1	0	TRUE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	3	0	PTMA	6002	chr2:232576635:+	ANP32B	18858	chr9:100774742:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0303	TRUE	0	0	0	3	0	TRUE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	2	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0202	0.0303	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0505	FALSE	93	270	15	244	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.23	1	0.0202	0.0101	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.0303	FALSE	292	1546	117	613	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--CCNL2	2	0	CPSF6	11046	chr12:69656342:+	CCNL2	25938	chr1:1326245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:5=pct:0.8],Vagina=[count:1=pct:1.8],Lung=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},GTEx_v2:{count=16;pct=0.18%;dist=Brain_-_Cerebellum=3,Lung=2,Esophagus_-_Mucosa=2,Brain_-_Cerebellar_Hemisphere=2,Vagina=1,Brain_-_Hippocampus=1,Artery_-_Coronary=1,Liver=1,Brain_-_Frontal_Cortex_(BA9)=1,Pituitary=1,Esophagus_-_Muscularis=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CCNL2->chr1:1321091-1334708:-,cyclin_L2	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	7	3	0	2	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DLEU2--KPNA3	2	0	DLEU2	1419	chr13:50699438:-	KPNA3	16213	chr13:50321129:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),KPNA3->chr13:50273447-50367057:-,karyopherin_subunit_alpha_3	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	1	0	1	1	TRUE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	METAP1--EIF4E	2	0	METAP1	1248	chr4:99917018:+	EIF4E	28557	chr4:99823133:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	{Klijn_CCL:Sarcomatoid=1,Stomach=1},LOCAL_INVERSION:+:-:[64983],METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1,EIF4E->Oncogene{Bushman},chr4:99792835-99851788:-,eukaryotic_translation_initiation_factor_4E	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	1	0	7	1	TRUE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHF7--RBBP6	2	0	PHF7	4385	chr3:52448603:+	RBBP6	14749	chr16:24551933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	PHF7->PHD_finger_protein_7,chr3:52444673-52457657:+,RBBP6->Oncogene{Bushman},chr16:24549014-24584184:+,retinoblastoma_binding_protein_6	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF13--RP11-167H9.4	2	0	RNF13	12719	chr3:149639014:+	RP11-167H9.4	22223	chr3:149842725:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	NEIGHBORS[77075],RNF13->chr3:149530495-149679926:+,ring_finger_protein_13,RP11-167H9.4->chr3:149757001-149931513:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	FALSE	4	2	0	3	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-319G9.5--WWOX	2	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	FALSE	154	425	28	76	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--CRK	2	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0202	TRUE	6	50	7	115	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--FUS	1	3	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	360	872	0.01	0	0.0101	0.0303	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0404	FALSE	5	20	0	32	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUMF2--GBAS	1	1	SUMF2	2534	chr7:56136331:+	GBAS	20119	chr7:56049903:+	ONLY_REF_SPLICE	YES	277	146	0.01	0.01	0.0101	0.0101	LOCAL_REARRANGEMENT:+:[63821],SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2,GBAS->chr7:56019486-56067874:+,glioblastoma_amplified_sequence	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TPH2--TRHDE	1	1	TPH2	20489	chr12:72469488:+	TRHDE	37350	chr12:72680461:+	ONLY_REF_SPLICE	YES	6	287	0.25	0.01	0.0101	0.0101	NEIGHBORS_OVERLAP:+:+:[99352],TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.25	0.0202	FALSE	0	4	0	3	0	FALSE	ACH-000070
697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TPH2--TRHDE	1	1	TPH2	18133	chr12:72441437:+	TRHDE	37350	chr12:72680461:+	ONLY_REF_SPLICE	YES	6	287	0.25	0.01	0.0101	0.0101	NEIGHBORS_OVERLAP:+:+:[99352],TPH2->chr12:72332626-72580398:+,tryptophan_hydroxylase_2,TRHDE->chr12:72481046-73059422:+,thyrotropin_releasing_hormone_degrading_enzyme	697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.25	0.0202	FALSE	0	1	0	4	0	FALSE	ACH-000070
NCIH526_LUNG	NBAS--AC010145.4	539	583	NBAS	5992	chr2:15691617:-	AC010145.4	64317	chr2:16137534:-	ONLY_REF_SPLICE	YES	771	0	0.59	1	6.5975	7.1361	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC010145.4->chr2:16137171-16203007:-	NCIH526_LUNG	0.59	1	13.7336	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	NBAS--DDX1	217	160	NBAS	8260	chr2:15676542:-	DDX1	74205	chr2:15753348:+	ONLY_REF_SPLICE	YES	844	6285	0.31	0.06	2.6561	1.9584	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	NCIH526_LUNG	0.06	0.31	4.6145	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	NBAS--AC010145.4	4	988	NBAS	35026	chr2:15506704:-	AC010145.4	62912	chr2:16203007:-	ONLY_REF_SPLICE	YES	617	0	0.62	1	0.049	12.0934	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC010145.4->chr2:16137171-16203007:-	NCIH526_LUNG	0.62	1	12.1424	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	WI2-1896O14.1--RP11-353N4.1	184	54	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	1	1	1	2.2522	0.661	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	NCIH526_LUNG	1	1	2.9132	TRUE	361	258	24	38	0	FALSE	ACH-000767
NCIH526_LUNG	XPR1--TRMT1L	112	50	XPR1	2319	chr1:180651547:+	TRMT1L	37286	chr1:185097879:-	ONLY_REF_SPLICE	YES	65	89	0.71	0.65	1.3709	0.612	XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,TRMT1L->chr1:185087220-185126204:-,tRNA_methyltransferase_1_like	NCIH526_LUNG	0.65	0.71	1.9829	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	KANSL1--ARL17B	101	56	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	57	104	0.73	0.6	1.2363	0.6855	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH526_LUNG	0.6	0.73	1.9218	TRUE	181	1564	124	196	0	FALSE	ACH-000767
NCIH526_LUNG	DHX9--LINC01035	85	52	DHX9	21901	chr1:182850782:+	LINC01035	29239	chr1:188874812:+	INCL_NON_REF_SPLICE	YES	655	0	0.17	1	1.0404	0.6365	DHX9->DEAH-box_helicase_9,Oncogene{Bushman},chr1:182808504-182856886:+,LINC01035->chr1:188874819-189006393:+,long_intergenic_non-protein_coding_RNA_1035	NCIH526_LUNG	0.17	1	1.6769	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	SLC25A36--PLSCR1	66	88	SLC25A36	1266	chr3:140660937:+	PLSCR1	26213	chr3:146246618:-	ONLY_REF_SPLICE	YES	99	209	0.61	0.42	0.8079	1.0771	SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1	NCIH526_LUNG	0.42	0.61	1.885	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	TIMM23B--LINC00843	59	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7222	0.2693	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH526_LUNG	0.99	1	0.9915	TRUE	508	994	45	981	0	FALSE	ACH-000767
NCIH526_LUNG	CTD-3094K11.1--AC142119.1	48	25	CTD-3094K11.1	2308	chr15:91384514:+	AC142119.1	8867	chr2:16225605:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5875	0.306	CTD-3094K11.1->chr15:91382954-91384608:+,AC142119.1->chr2:16225344-16245963:-	NCIH526_LUNG	1	1	0.8935	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	HNRNPM--RPS28	44	33	HNRNPM	2515	chr19:8520458:+	RPS28	22867	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1257	52	0.06	0.6	0.5386	0.4039	HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH526_LUNG	0.06	0.6	0.9425	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	AP000525.9--LA16c-60G3.6	49	3	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	10	0	0.84	1	0.5998	0.0367	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH526_LUNG	0.84	1	0.6365	TRUE	0	42	0	133	42	FALSE	ACH-000767
NCIH526_LUNG	MT-TA--MT-TC	44	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5386	0.0857	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH526_LUNG	1	1	0.6243	FALSE	462	80	0	856	0	FALSE	ACH-000767
NCIH526_LUNG	AL589743.1--RP11-536C10.17	45	1	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	9	0	0.84	1	0.5508	0.0122	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	NCIH526_LUNG	0.84	1	0.563	TRUE	0	33	0	45	33	FALSE	ACH-000767
NCIH526_LUNG	KIAA0226--RNF13	33	39	KIAA0226	3878	chr3:197463526:-	RNF13	43297	chr3:149677843:+	ONLY_REF_SPLICE	YES	31	99	0.7	0.42	0.4039	0.4774	KIAA0226->chr3:197398264-197476598:-,RNF13->chr3:149530495-149679926:+,ring_finger_protein_13	NCIH526_LUNG	0.42	0.7	0.8813	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	TIMM23--RP11-464F9.1	39	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	166	3	0.2	0.93	0.4774	0.0245	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH526_LUNG	0.2	0.93	0.5019	TRUE	519	3926	326	965	0	FALSE	ACH-000767
NCIH526_LUNG	NBAS--DDX1	26	48	NBAS	7126	chr2:15679347:-	DDX1	75266	chr2:15757368:+	ONLY_REF_SPLICE	YES	836	6368	0.08	0.01	0.3182	0.5875	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	NCIH526_LUNG	0.01	0.08	0.9057	TRUE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	CIT--RFC5	26	13	CIT	30009	chr12:120171969:-	RFC5	58164	chr12:118456877:+	ONLY_REF_SPLICE	YES	23	427	0.63	0.08	0.3182	0.1591	CIT->chr12:120123595-120315095:-,citron_rho-interacting_serine/threonine_kinase,RFC5->chr12:118451393-118470935:+,replication_factor_C_subunit_5	NCIH526_LUNG	0.08	0.63	0.4773	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	SLC25A36--PLSCR1	18	40	SLC25A36	1266	chr3:140660937:+	PLSCR1	28102	chr3:146243434:-	ONLY_REF_SPLICE	YES	99	137	0.37	0.3	0.2203	0.4896	SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1	NCIH526_LUNG	0.3	0.37	0.7099	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	NBAS--DDX1	21	27	NBAS	5992	chr2:15691617:-	DDX1	75266	chr2:15757368:+	ONLY_REF_SPLICE	YES	771	6368	0.06	0.01	0.257	0.3305	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	NCIH526_LUNG	0.01	0.06	0.5875	TRUE	0	0	0	2	0	FALSE	ACH-000767
NCIH526_LUNG	NBAS--DDX1	1	105	NBAS	48078	chr2:15415608:-	DDX1	75266	chr2:15757368:+	ONLY_REF_SPLICE	NO	352	6368	0.23	0.02	0.0122	1.2852	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	NCIH526_LUNG	0.02	0.23	1.2974	TRUE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	NBAS--DDX1	1	102	NBAS	33912	chr2:15514732:-	DDX1	75266	chr2:15757368:+	ONLY_REF_SPLICE	YES	1114	6368	0.08	0.02	0.0122	1.2485	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	NCIH526_LUNG	0.02	0.08	1.2607	TRUE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	NBAS--DDX1	1	102	NBAS	11567	chr2:15644269:-	DDX1	75266	chr2:15757368:+	ONLY_REF_SPLICE	YES	812	6368	0.11	0.02	0.0122	1.2485	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	NCIH526_LUNG	0.02	0.11	1.2607	TRUE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	NPM1P24--SET	26	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3182	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH526_LUNG	1	1	0.3182	TRUE	0	0	0	434	0	FALSE	ACH-000767
NCIH526_LUNG	SLC25A36--PLSCR1	2	93	SLC25A36	1900	chr3:140661571:+	PLSCR1	26213	chr3:146246618:-	ONLY_REF_SPLICE	YES	107	209	0.47	0.31	0.0245	1.1383	SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1	NCIH526_LUNG	0.31	0.47	1.1628	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	ZNF654--HMGB2	24	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2938	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH526_LUNG	1	1	0.2938	TRUE	0	0	0	518	0	FALSE	ACH-000767
NCIH526_LUNG	CTD-3094K11.1--AC142119.1	18	20	CTD-3094K11.1	1177	chr15:91383130:+	AC142119.1	8867	chr2:16225605:-	ONLY_REF_SPLICE	YES	58	0	0.4	1	0.2203	0.2448	CTD-3094K11.1->chr15:91382954-91384608:+,AC142119.1->chr2:16225344-16245963:-	NCIH526_LUNG	0.4	1	0.4651	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	DHX9--LINC01035	11	44	DHX9	21901	chr1:182850782:+	LINC01035	29272	chr1:188874845:+	INCL_NON_REF_SPLICE	YES	655	0	0.08	1	0.1346	0.5386	DHX9->DEAH-box_helicase_9,Oncogene{Bushman},chr1:182808504-182856886:+,LINC01035->chr1:188874819-189006393:+,long_intergenic_non-protein_coding_RNA_1035	NCIH526_LUNG	0.08	1	0.6732	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	NBAS--DDX1	3	75	NBAS	7126	chr2:15679347:-	DDX1	74205	chr2:15753348:+	ONLY_REF_SPLICE	YES	836	6285	0.09	0.01	0.0367	0.918	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	NCIH526_LUNG	0.01	0.09	0.9547	TRUE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	CTD-2008L17.1--RP11-456O19.2	16	12	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	6	0	0.82	1	0.1958	0.1469	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH526_LUNG	0.82	1	0.3427	FALSE	20	187	4	79	0	FALSE	ACH-000767
NCIH526_LUNG	NBAS--DDX1	9	40	NBAS	5992	chr2:15691617:-	DDX1	74205	chr2:15753348:+	ONLY_REF_SPLICE	YES	771	6285	0.06	0.01	0.1102	0.4896	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	NCIH526_LUNG	0.01	0.06	0.5998	TRUE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	WI2-1896O14.1--RP11-353N4.1	4	57	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	5570	chr1:149591759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.049	0.6977	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	NCIH526_LUNG	1	1	0.7467	TRUE	361	258	24	38	0	FALSE	ACH-000767
NCIH526_LUNG	SIL1--DNAJC18	15	6	SIL1	18569	chr5:138386627:-	DNAJC18	33943	chr5:138775181:-	ONLY_REF_SPLICE	YES	8	0	0.72	1	0.1836	0.0734	SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,DNAJC18->DnaJ_heat_shock_protein_family_(Hsp40)_member_C18,chr5:138744279-138780180:-	NCIH526_LUNG	0.72	1	0.257	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	CACNA2D3--UTP6	11	7	CACNA2D3	7860	chr3:54420801:+	UTP6	45594	chr17:30226749:-	ONLY_REF_SPLICE	YES	4	291	0.82	0.06	0.1346	0.0857	CACNA2D3->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_3,chr3:54156574-55108584:+,UTP6->UTP6,_small_subunit_processome_component,chr17:30187923-30228784:-	NCIH526_LUNG	0.06	0.82	0.2203	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	DHX9--LINC01035	12	3	DHX9	21901	chr1:182850782:+	LINC01035	29445	chr1:188875018:+	INCL_NON_REF_SPLICE	YES	655	6	0.02	0.71	0.1469	0.0367	DHX9->DEAH-box_helicase_9,Oncogene{Bushman},chr1:182808504-182856886:+,LINC01035->chr1:188874819-189006393:+,long_intergenic_non-protein_coding_RNA_1035	NCIH526_LUNG	0.02	0.71	0.1836	TRUE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	OR51S1--TP53I11	12	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1469	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH526_LUNG	1	1	0.1469	TRUE	402	216	10	229	0	FALSE	ACH-000767
NCIH526_LUNG	MT-TA--MT-TC	10	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1224	0.0857	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH526_LUNG	1	1	0.2081	FALSE	462	80	0	856	0	FALSE	ACH-000767
NCIH526_LUNG	MT-ND6--MT-TE	10	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.84	1	0.1224	0.0734	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH526_LUNG	0.84	1	0.1958	FALSE	499	1288	110	792	0	FALSE	ACH-000767
NCIH526_LUNG	RASAL2--RALGPS2	9	10	RASAL2	10528	chr1:178359341:+	RALGPS2	45656	chr1:178802559:+	ONLY_REF_SPLICE	YES	19	65	0.5	0.23	0.1102	0.1224	HGNC_GENEFAM,RASAL2->Oncogene{Bushman},RAS_protein_activator_like_2,chr1:178062864-178448644:+,RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+	NCIH526_LUNG	0.23	0.5	0.2326	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	CALM3--MT-ND4L	7	17	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2039	0	0.01	1	0.0857	0.2081	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH526_LUNG	0.01	1	0.2938	FALSE	1	1	0	107	0	FALSE	ACH-000767
NCIH526_LUNG	SLC25A36--PLSCR1	3	33	SLC25A36	1266	chr3:140660937:+	PLSCR1	29221	chr3:146239840:-	ONLY_REF_SPLICE	YES	99	162	0.27	0.18	0.0367	0.4039	SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1	NCIH526_LUNG	0.18	0.27	0.4406	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	SLC25A36--PLSCR1	1	41	SLC25A36	1900	chr3:140661571:+	PLSCR1	28102	chr3:146243434:-	ONLY_REF_SPLICE	YES	107	137	0.28	0.23	0.0122	0.5019	SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1	NCIH526_LUNG	0.23	0.28	0.5141	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	AP000525.9--LA16c-60G3.6	11	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1346	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH526_LUNG	1	1	0.1346	TRUE	0	5	0	18	5	TRUE	ACH-000767
NCIH526_LUNG	NBAS--DDX1	1	40	NBAS	5992	chr2:15691617:-	DDX1	69523	chr2:15743316:+	ONLY_REF_SPLICE	YES	771	5133	0.05	0.01	0.0122	0.4896	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	NCIH526_LUNG	0.01	0.05	0.5018	TRUE	0	0	0	2	0	FALSE	ACH-000767
NCIH526_LUNG	C15orf57--CBX3	8	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	44	32	0.3	0.37	0.0979	0.1346	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH526_LUNG	0.3	0.37	0.2325	TRUE	267	562	48	632	0	FALSE	ACH-000767
NCIH526_LUNG	RP11-120D5.1--MID1	9	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	50	0.83	0.23	0.1102	0.0734	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH526_LUNG	0.23	0.83	0.1836	FALSE	16	356	14	466	0	FALSE	ACH-000767
NCIH526_LUNG	XXYLT1--MED12L	9	5	XXYLT1	13847	chr3:194877178:-	MED12L	48583	chr3:151072909:+	ONLY_REF_SPLICE	YES	38	4	0.27	0.78	0.1102	0.0612	XXYLT1->Oncogene{Bushman},chr3:194789008-194991896:-,xyloside_xylosyltransferase_1,MED12L->chr3:150803484-151154860:+,mediator_complex_subunit_12_like	NCIH526_LUNG	0.27	0.78	0.1714	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	NBAS--DDX1	3	26	NBAS	5992	chr2:15691617:-	DDX1	75270	chr2:15757372:+	INCL_NON_REF_SPLICE	YES	771	6279	0.04	0	0.0367	0.3182	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	NCIH526_LUNG	0	0.04	0.3549	TRUE	0	0	0	2	0	FALSE	ACH-000767
NCIH526_LUNG	FBXO42--CROCCP3	7	8	FBXO42	3584	chr1:16632298:-	CROCCP3	22961	chr1:16817421:-	ONLY_REF_SPLICE	YES	59	12	0.2	0.56	0.0857	0.0979	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,CROCCP3->chr1:16793931-16825752:-,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_3	NCIH526_LUNG	0.2	0.56	0.1836	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	PRKCI--FAM194A	8	4	PRKCI	18733	chr3:170016898:+	FAM194A	28210	chr3:150416669:-	ONLY_REF_SPLICE	YES	57	0	0.17	1	0.0979	0.049	PRKCI->ArcherDX_panel,FoundationOne_panel,chr3:169940153-170023769:+,protein_kinase_C_iota,FAM194A->chr3:150377672-150421758:-	NCIH526_LUNG	0.17	1	0.1469	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	TNIK--A4GNT	8	4	TNIK	8225	chr3:170912314:-	A4GNT	46172	chr3:137850124:-	ONLY_REF_SPLICE	YES	22	0	0.35	1	0.0979	0.049	TNIK->TRAF2_and_NCK_interacting_kinase,chr3:170779128-171178197:-,A4GNT->alpha-1,4-N-acetylglucosaminyltransferase,chr3:137842560-137851229:-	NCIH526_LUNG	0.35	1	0.1469	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	RP11-680G10.1--GSE1	8	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	84	1	0.11	0.0979	0.0245	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH526_LUNG	0.11	1	0.1224	TRUE	465	1949	224	605	0	FALSE	ACH-000767
NCIH526_LUNG	HNRNPM--RPS28	5	13	HNRNPM	2515	chr19:8520458:+	RPS28	23309	chr19:8386837:+	ONLY_REF_SPLICE	YES	1257	831	0.01	0.02	0.0612	0.1591	HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH526_LUNG	0.01	0.02	0.2203	TRUE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	MT-ND6--MT-TE	7	4	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0857	0.049	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH526_LUNG	1	1	0.1347	FALSE	499	1288	110	792	0	FALSE	ACH-000767
NCIH526_LUNG	MT-ND6--MT-TE	6	8	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.82	1	0.0734	0.0979	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH526_LUNG	0.82	1	0.1713	FALSE	499	1288	110	792	0	FALSE	ACH-000767
NCIH526_LUNG	C15orf57--CBX3	5	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	43	34	0.22	0.26	0.0612	0.0857	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH526_LUNG	0.22	0.26	0.1469	TRUE	267	562	48	632	0	FALSE	ACH-000767
NCIH526_LUNG	HSP90AB1--MT-RNR2	6	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2628	0	0	1	0.0734	0.0367	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH526_LUNG	0	1	0.1101	FALSE	13	9	0	364	0	FALSE	ACH-000767
NCIH526_LUNG	KIAA0226--RNF13	6	2	KIAA0226	1459	chr3:197476140:-	RNF13	43297	chr3:149677843:+	ONLY_REF_SPLICE	YES	11	99	0.42	0.07	0.0734	0.0245	KIAA0226->chr3:197398264-197476598:-,RNF13->chr3:149530495-149679926:+,ring_finger_protein_13	NCIH526_LUNG	0.07	0.42	0.0979	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	MT-ND6--MT-TE	6	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0734	0.0245	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH526_LUNG	1	1	0.0979	FALSE	499	1288	110	792	0	FALSE	ACH-000767
NCIH526_LUNG	MT-ND6--MT-TE	6	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0734	0.0245	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH526_LUNG	1	1	0.0979	FALSE	499	1288	110	792	0	FALSE	ACH-000767
NCIH526_LUNG	RP11-123O10.4--GRIP1	6	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0734	0.0245	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH526_LUNG	1	1	0.0979	FALSE	416	2512	207	587	0	FALSE	ACH-000767
NCIH526_LUNG	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0734	0.0122	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH526_LUNG	1	1	0.0856	FALSE	462	80	0	856	0	FALSE	ACH-000767
NCIH526_LUNG	GDAP1--RP11-758M4.1	5	4	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	116	0	0.07	1	0.0612	0.049	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH526_LUNG	0.07	1	0.1102	TRUE	7	28	0	43	0	FALSE	ACH-000767
NCIH526_LUNG	CLEC16A--ATF7IP2	4	6	CLEC16A	25214	chr16:11154879:+	ATF7IP2	60354	chr16:10567336:+	ONLY_REF_SPLICE	YES	20	1	0.33	0.91	0.049	0.0734	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,ATF7IP2->activating_transcription_factor_7_interacting_protein_2,chr16:10420291-10577495:+	NCIH526_LUNG	0.33	0.91	0.1224	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	HNRNPM--RPS28	5	2	HNRNPM	2515	chr19:8520458:+	RPS28	23628	chr19:8387156:+	ONLY_REF_SPLICE	YES	1257	208	0.01	0.03	0.0612	0.0245	HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH526_LUNG	0.01	0.03	0.0857	FALSE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	IFT122--EPHB1	4	5	IFT122	30703	chr3:129226605:+	EPHB1	60091	chr3:134825290:+	ONLY_REF_SPLICE	YES	117	5	0.07	0.64	0.049	0.0612	IFT122->chr3:129158968-129239198:+,intraflagellar_transport_122,EPHB1->ArcherDX_panel,EPH_receptor_B1,FoundationOne_panel,chr3:134316643-134979309:+	NCIH526_LUNG	0.07	0.64	0.1102	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	KANSL1--ARL17B	2	13	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	83	104	0.15	0.13	0.0245	0.1591	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH526_LUNG	0.13	0.15	0.1836	TRUE	105	90	7	93	0	FALSE	ACH-000767
NCIH526_LUNG	MT-ND6--MT-TE	3	8	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.79	1	0.0367	0.0979	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH526_LUNG	0.79	1	0.1346	FALSE	499	1288	110	792	0	FALSE	ACH-000767
NCIH526_LUNG	PVT1--SNTB1	5	0	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0612	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH526_LUNG	1	1	0.0612	TRUE	0	0	0	25	0	FALSE	ACH-000767
NCIH526_LUNG	WTAPP1--RUVBL1	5	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0612	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	NCIH526_LUNG	1	1	0.0612	TRUE	9	252	6	66	0	FALSE	ACH-000767
NCIH526_LUNG	MT-ND6--MT-TE	3	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0.0734	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH526_LUNG	1	1	0.1101	FALSE	499	1288	110	792	0	FALSE	ACH-000767
NCIH526_LUNG	RP11-108K3.1--GLDN	4	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	6	1	0.5	0.049	0.0245	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH526_LUNG	0.5	1	0.0735	FALSE	1	20	0	46	0	FALSE	ACH-000767
NCIH526_LUNG	MED12L--TNK2	3	5	MED12L	25907	chr3:151075164:+	TNK2	82176	chr3:195593887:-	ONLY_REF_SPLICE	NO	7	74	0.53	0.1	0.0367	0.0612	MED12L->chr3:150803484-151154860:+,mediator_complex_subunit_12_like,TNK2->chr3:195590235-195638816:-,tyrosine_kinase_non_receptor_2	NCIH526_LUNG	0.1	0.53	0.0979	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	CTD-2008L17.1--RP11-456O19.2	1	12	CTD-2008L17.1	3828	chr18:53685010:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.0122	0.1469	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH526_LUNG	0.81	1	0.1591	FALSE	1	24	0	14	0	FALSE	ACH-000767
NCIH526_LUNG	DLG2--SYTL2	4	0	DLG2	4613	chr11:85309701:-	SYTL2	67427	chr11:85456815:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.049	0	LOCAL_REARRANGEMENT:-:[66301],DLG2->chr11:83166055-85338966:-,discs_large_homolog_2,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	NCIH526_LUNG	1	1	0.049	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	FOXJ3--ZMYND12	3	4	FOXJ3	7672	chr1:42730786:-	ZMYND12	28074	chr1:42905696:-	ONLY_REF_SPLICE	YES	102	3	0.06	0.7	0.0367	0.049	LOCAL_REARRANGEMENT:-:[94452],FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,ZMYND12->chr1:42896000-42921938:-,zinc_finger_MYND-type_containing_12	NCIH526_LUNG	0.06	0.7	0.0857	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	PRMT1--RPS11	4	0	PRMT1	2531	chr19:50180573:+	RPS11	16750	chr19:50000451:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.049	0	GTEx&tcga_normals:1/3694=0.03%,PRMT1->chr19:50179043-50192286:+,protein_arginine_methyltransferase_1,RPS11->chr19:49999622-50002946:+,ribosomal_protein_S11	NCIH526_LUNG	1	1	0.049	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	HSP90AB1--MT-RNR2	3	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2634	0	0	1	0.0367	0.0367	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH526_LUNG	0	1	0.0734	FALSE	13	9	0	364	0	FALSE	ACH-000767
NCIH526_LUNG	RIMS2--ATP6V1C1	3	2	RIMS2	1315	chr8:104513290:+	ATP6V1C1	50778	chr8:104053026:+	ONLY_REF_SPLICE	YES	17	103	0.23	0.05	0.0367	0.0245	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Breast=1},RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+	NCIH526_LUNG	0.05	0.23	0.0612	TRUE	0	1	0	1	1	TRUE	ACH-000767
NCIH526_LUNG	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	17	1	0.23	0.0367	0.0245	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH526_LUNG	0.23	1	0.0612	TRUE	458	1351	185	561	0	FALSE	ACH-000767
NCIH526_LUNG	CACNA2D3--UTP6	2	5	CACNA2D3	7860	chr3:54420801:+	UTP6	46679	chr17:30222030:-	ONLY_REF_SPLICE	YES	4	254	0.64	0.03	0.0245	0.0612	CACNA2D3->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_3,chr3:54156574-55108584:+,UTP6->UTP6,_small_subunit_processome_component,chr17:30187923-30228784:-	NCIH526_LUNG	0.03	0.64	0.0857	TRUE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	RP11-108K3.1--GLDN	1	9	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	3	1	0.77	0.0122	0.1102	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH526_LUNG	0.77	1	0.1224	FALSE	0	19	0	46	0	FALSE	ACH-000767
NCIH526_LUNG	TM9SF2--CNTN5	2	5	TM9SF2	1361	chr13:100154031:+	CNTN5	27583	chr11:99196077:+	ONLY_REF_SPLICE	YES	371	0	0.02	1	0.0245	0.0612	TM9SF2->chr13:100153671-100216260:+,transmembrane_9_superfamily_member_2,CNTN5->chr11:98891683-100229616:+,contactin_5	NCIH526_LUNG	0.02	1	0.0857	TRUE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	CHD8--HNRNPC	3	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0367	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	NCIH526_LUNG	1	1	0.0367	TRUE	2	8	0	24	0	FALSE	ACH-000767
NCIH526_LUNG	FTH1--ACTB	3	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH526_LUNG	1	1	0.0367	TRUE	1	0	0	97	0	FALSE	ACH-000767
NCIH526_LUNG	MT-ND4--C20orf112	3	0	MT-ND4	1482	chrM:11241:+	C20orf112	29551	chr20:31033103:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0367	0	MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,C20orf112->chr20:31030862-31172876:-	NCIH526_LUNG	1	1	0.0367	FALSE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	SLC25A36--PLSCR1	2	4	SLC25A36	1266	chr3:140660937:+	PLSCR1	31973	chr3:146234954:-	ONLY_REF_SPLICE	YES	99	186	0.06	0.03	0.0245	0.049	SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1	NCIH526_LUNG	0.03	0.06	0.0735	TRUE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	RP4-565E6.1--HYDIN	2	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0245	0.0367	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH526_LUNG	0.83	1	0.0612	TRUE	84	87	4	41	0	FALSE	ACH-000767
NCIH526_LUNG	GNGT1--AC002076.10	2	2	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0245	0.0245	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	NCIH526_LUNG	0.8	1	0.049	FALSE	0	28	0	37	0	FALSE	ACH-000767
NCIH526_LUNG	CERS6--STK39	2	1	CERS6	1757	chr2:169313128:+	STK39	28616	chr2:168994731:-	ONLY_REF_SPLICE	YES	767	394	0	0.01	0.0245	0.0122	GTEx_v2:{count=5;pct=0.06%;dist=Vagina=1,Cervix_-_Ectocervix=1,Adipose_-_Subcutaneous=1,Whole_Blood=1,Colon_-_Transverse=1},CERS6->ceramide_synthase_6,chr2:169312372-169631644:+,STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39	NCIH526_LUNG	0	0.01	0.0367	FALSE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	CERS6--STK39	2	1	CERS6	5052	chr2:169487552:+	STK39	32157	chr2:168931741:-	ONLY_REF_SPLICE	YES	721	342	0	0.01	0.0245	0.0122	GTEx_v2:{count=5;pct=0.06%;dist=Vagina=1,Cervix_-_Ectocervix=1,Adipose_-_Subcutaneous=1,Whole_Blood=1,Colon_-_Transverse=1},CERS6->ceramide_synthase_6,chr2:169312372-169631644:+,STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39	NCIH526_LUNG	0	0.01	0.0367	FALSE	0	1	0	2	0	FALSE	ACH-000767
NCIH526_LUNG	FBXO42--CROCCP3	1	5	FBXO42	3584	chr1:16632298:-	CROCCP3	23104	chr1:16817278:-	ONLY_REF_SPLICE	YES	59	15	0.09	0.29	0.0122	0.0612	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,CROCCP3->chr1:16793931-16825752:-,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_3	NCIH526_LUNG	0.09	0.29	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	FOXJ3--ZMYND12	1	5	FOXJ3	7672	chr1:42730786:-	ZMYND12	25760	chr1:42915730:-	ONLY_REF_SPLICE	YES	102	1	0.06	0.86	0.0122	0.0612	LOCAL_REARRANGEMENT:-:[94452],FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,ZMYND12->chr1:42896000-42921938:-,zinc_finger_MYND-type_containing_12	NCIH526_LUNG	0.06	0.86	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	FUBP1--IVNS1ABP	2	1	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	303	859	0.01	0	0.0245	0.0122	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NCIH526_LUNG	0	0.01	0.0367	FALSE	1	4	0	16	0	FALSE	ACH-000767
NCIH526_LUNG	RASAL2--RALGPS2	1	5	RASAL2	10528	chr1:178359341:+	RALGPS2	46783	chr1:178846633:+	ONLY_REF_SPLICE	YES	19	69	0.24	0.08	0.0122	0.0612	HGNC_GENEFAM,RASAL2->Oncogene{Bushman},RAS_protein_activator_like_2,chr1:178062864-178448644:+,RALGPS2->Oncogene{Bushman},Ral_GEF_with_PH_domain_and_SH3_binding_motif_2,chr1:178694300-178889238:+	NCIH526_LUNG	0.08	0.24	0.0734	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	SCAF4--CHMP1A	2	1	SCAF4	16796	chr21:33057362:-	CHMP1A	27950	chr16:89713739:-	ONLY_REF_SPLICE	YES	153	167	0.02	0.02	0.0245	0.0122	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=22;pct=0.25%;dist=Small_Intestine_-_Terminal_Ileum=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Breast_-_Mammary_Tissue=1,Lung=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Brain_-_Frontal_Cortex_(BA9)=1,Uterus=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellar_Hemisphere=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Testis=1,Cells_-_Transformed_fibroblasts=1},SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH526_LUNG	0.02	0.02	0.0367	TRUE	8	8	2	7	0	FALSE	ACH-000767
NCIH526_LUNG	SF1--GNAS	2	1	SF1	3289	chr11:64543970:-	GNAS	32063	chr20:57470667:+	ONLY_REF_SPLICE	YES	499	1137	0.01	0	0.0245	0.0122	GTEx_FI:{Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=3,Pituitary=3,Minor_Salivary_Gland=1,Brain_-_Hypothalamus=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH526_LUNG	0	0.01	0.0367	FALSE	4	13	1	15	0	FALSE	ACH-000767
NCIH526_LUNG	SUMF1--AC026188.1	2	1	SUMF1	24875	chr3:3819409:-	AC026188.1	40428	chr3:3292392:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0245	0.0122	NEIGHBORS[73518],SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,AC026188.1->chr3:3292371-3668980:-	NCIH526_LUNG	0.75	1	0.0367	FALSE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	BRWD1--TTC3	2	0	BRWD1	4942	chr21:40670358:-	TTC3	75301	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH526_LUNG	1	1	0.0245	TRUE	0	1	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	CANX--HNRNPH1	2	0	CANX	9680	chr5:179135381:+	HNRNPH1	33289	chr5:179045324:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_INVERSION:+:-:[43844],CANX->calnexin,chr5:179105629-179157926:+,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	COMMD2--KIAA0408	2	0	COMMD2	2822	chr3:149468465:-	KIAA0408	17935	chr6:127765427:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	COMMD2->COMM_domain_containing_2,chr3:149456257-149470286:-,KIAA0408->KIAA0408,chr6:127761488-127780536:-	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	CTD-2006C1.2--DNMT1	2	0	CTD-2006C1.2	3469	chr19:12112637:+	DNMT1	25217	chr19:10292753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	CTD-2006C1.2->chr19:12098432-12157090:+,DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	CTD-2008L17.1--RP11-456O19.2	1	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	NO	6	2	0.45	0.71	0.0122	0.049	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH526_LUNG	0.45	0.71	0.0612	FALSE	33	240	4	98	0	FALSE	ACH-000767
NCIH526_LUNG	DANCR--NME7	2	0	DANCR	1530	chr4:53579126:+	NME7	21292	chr1:169206925:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,NME7->NME/NM23_family_member_7,chr1:169101769-169337205:-	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	EIF3D--GON4L	2	0	EIF3D	6391	chr22:36919256:-	GON4L	31207	chr1:155774932:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	EIF3D->chr22:36906897-36925483:-,eukaryotic_translation_initiation_factor_3_subunit_D,GON4L->chr1:155719508-155829191:-,gon-4_like	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	FMNL3--TMBIM6	2	0	FMNL3	2111	chr12:50100838:-	TMBIM6	41092	chr12:50146247:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	NEIGHBORS_OVERLAP:-:+:[440],FMNL3->Oncogene{Bushman},chr12:50031724-50101948:-,formin_like_3,TMBIM6->chr12:50101508-50158717:+,transmembrane_BAX_inhibitor_motif_containing_6	NCIH526_LUNG	1	1	0.0245	FALSE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	IFT122--EPHB1	1	4	IFT122	29605	chr3:129225392:+	EPHB1	60091	chr3:134825290:+	ONLY_REF_SPLICE	YES	105	5	0.05	0.5	0.0122	0.049	IFT122->chr3:129158968-129239198:+,intraflagellar_transport_122,EPHB1->ArcherDX_panel,EPH_receptor_B1,FoundationOne_panel,chr3:134316643-134979309:+	NCIH526_LUNG	0.05	0.5	0.0612	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	LDLRAD3--PRR5L	2	0	LDLRAD3	5673	chr11:36120011:+	PRR5L	34366	chr11:36422547:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	NCIH526_LUNG	1	1	0.0245	FALSE	12	71	0	11	0	FALSE	ACH-000767
NCIH526_LUNG	LPAR5--PEMT	2	0	LPAR5	1541	chr12:6745073:-	PEMT	21236	chr17:17409615:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	LPAR5->chr12:6728001-6745613:-,lysophosphatidic_acid_receptor_5,PEMT->chr17:17408877-17495022:-,phosphatidylethanolamine_N-methyltransferase	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	MTNR1A--F11-AS1	2	0	MTNR1A	1386	chr4:187476336:-	F11-AS1	13581	chr4:187212186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	NEIGHBORS[32658],MTNR1A->chr4:187454809-187476721:-,melatonin_receptor_1A,F11-AS1->F11_antisense_RNA_1,chr4:187207248-187422151:-	NCIH526_LUNG	1	1	0.0245	FALSE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	NBAS--DDX1	1	4	NBAS	1143	chr2:15701312:-	DDX1	75266	chr2:15757368:+	ONLY_REF_SPLICE	YES	1163	6368	0	0	0.0122	0.049	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	NCIH526_LUNG	0	0	0.0612	FALSE	0	0	0	2	0	FALSE	ACH-000767
NCIH526_LUNG	RCC1--ACLY	2	0	RCC1	2920	chr1:28835417:+	ACLY	43457	chr17:40028435:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ACLY->ATP_citrate_lyase,chr17:40023161-40086795:-	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	RP4-565E6.1--HYDIN	1	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0122	0.049	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH526_LUNG	1	1	0.0612	TRUE	456	1387	91	133	0	FALSE	ACH-000767
NCIH526_LUNG	SAR1A--HSPA14	2	0	SAR1A	1111	chr10:71930169:-	HSPA14	32862	chr10:14909082:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	SAR1A->chr10:71907045-71930279:-,secretion_associated_Ras_related_GTPase_1A,HSPA14->chr10:14880163-14913740:+,heat_shock_protein_family_A_(Hsp70)_member_14	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	TANC1--LUC7L2	2	0	TANC1	26696	chr2:160075872:+	LUC7L2	41915	chr7:139060808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH526_LUNG	1	1	0.0245	TRUE	62	24	1	171	0	FALSE	ACH-000767
NCIH526_LUNG	TNIK--A4GNT	2	0	TNIK	8225	chr3:170912314:-	A4GNT	47606	chr3:137843720:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	TNIK->TRAF2_and_NCK_interacting_kinase,chr3:170779128-171178197:-,A4GNT->alpha-1,4-N-acetylglucosaminyltransferase,chr3:137842560-137851229:-	NCIH526_LUNG	1	1	0.0245	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	VWDE--PHF14	2	0	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0245	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH526_LUNG	1	1	0.0245	TRUE	0	6	0	17	2	TRUE	ACH-000767
NCIH526_LUNG	FBXO42--CROCCP3	1	3	FBXO42	3584	chr1:16632298:-	CROCCP3	25204	chr1:16813156:-	ONLY_REF_SPLICE	YES	59	19	0.06	0.17	0.0122	0.0367	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,CROCCP3->chr1:16793931-16825752:-,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_3	NCIH526_LUNG	0.06	0.17	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	GNGT1--AC002076.10	1	3	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	6	0	0.4	1	0.0122	0.0367	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	NCIH526_LUNG	0.4	1	0.0489	FALSE	0	10	0	30	0	FALSE	ACH-000767
NCIH526_LUNG	RP11-120D5.1--MID1	1	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	50	0.36	0.07	0.0122	0.0367	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH526_LUNG	0.07	0.36	0.0489	FALSE	0	48	1	163	0	FALSE	ACH-000767
NCIH526_LUNG	SIL1--DNAJC18	1	3	SIL1	18569	chr5:138386627:-	DNAJC18	36219	chr5:138764372:-	ONLY_REF_SPLICE	YES	8	38	0.33	0.1	0.0122	0.0367	SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,DNAJC18->DnaJ_heat_shock_protein_family_(Hsp40)_member_C18,chr5:138744279-138780180:-	NCIH526_LUNG	0.1	0.33	0.0489	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	SUMF1--AC026188.1	1	3	SUMF1	24875	chr3:3819409:-	AC026188.1	30971	chr3:3668533:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0122	0.0367	NEIGHBORS[73518],SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,AC026188.1->chr3:3292371-3668980:-	NCIH526_LUNG	0.8	1	0.0489	FALSE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	SUMF1--AC026188.1	1	3	SUMF1	24875	chr3:3819409:-	AC026188.1	35425	chr3:3379147:-	ONLY_REF_SPLICE	NO	1	0	0.8	1	0.0122	0.0367	NEIGHBORS[73518],SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,AC026188.1->chr3:3292371-3668980:-	NCIH526_LUNG	0.8	1	0.0489	FALSE	3	6	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	CIT--RFC5	1	2	CIT	29013	chr12:120172965:-	RFC5	58164	chr12:118456877:+	ONLY_REF_SPLICE	NO	40	427	0.07	0.01	0.0122	0.0245	CIT->chr12:120123595-120315095:-,citron_rho-interacting_serine/threonine_kinase,RFC5->chr12:118451393-118470935:+,replication_factor_C_subunit_5	NCIH526_LUNG	0.01	0.07	0.0367	FALSE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	GDAP1--RP11-758M4.1	1	2	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	19325	chr8:75614614:+	ONLY_REF_SPLICE	YES	116	7	0.03	0.3	0.0122	0.0245	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	NCIH526_LUNG	0.03	0.3	0.0367	TRUE	0	1	0	4	0	FALSE	ACH-000767
NCIH526_LUNG	HNRNPM--ANGPTL4	1	2	HNRNPM	2515	chr19:8520458:+	ANGPTL4	23431	chr19:8429090:+	ONLY_REF_SPLICE	YES	1256	5	0	0.38	0.0122	0.0245	LOCAL_REARRANGEMENT:+:[70394],HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,ANGPTL4->angiopoietin_like_4,chr19:8428173-8439257:+	NCIH526_LUNG	0	0.38	0.0367	FALSE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	HNRNPM--ANGPTL4	1	2	HNRNPM	2515	chr19:8520458:+	ANGPTL4	22999	chr19:8428658:+	ONLY_REF_SPLICE	YES	1256	0	0	1	0.0122	0.0245	LOCAL_REARRANGEMENT:+:[70394],HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,ANGPTL4->angiopoietin_like_4,chr19:8428173-8439257:+	NCIH526_LUNG	0	1	0.0367	FALSE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	ITGA6--AC104801.1	1	2	ITGA6	10913	chr2:173341241:+	AC104801.1	31017	chr2:172973630:+	ONLY_REF_SPLICE	NO	38	1	0.07	0.75	0.0122	0.0245	ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6,AC104801.1->chr2:172967734-172974710:+	NCIH526_LUNG	0.07	0.75	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	KANSL1--ARL17B	1	2	KANSL1	7536	chr17:44248221:-	ARL17B	40066	chr17:44388641:-	ONLY_REF_SPLICE	YES	83	25	0.03	0.11	0.0122	0.0245	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH526_LUNG	0.03	0.11	0.0367	TRUE	0	2	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	RIMS2--KB-1507C5.2	1	2	RIMS2	1315	chr8:104513290:+	KB-1507C5.2	66544	chr8:103989815:+	ONLY_REF_SPLICE	YES	17	1	0.15	0.75	0.0122	0.0245	RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2,KB-1507C5.2->chr8:103876528-103990104:+	NCIH526_LUNG	0.15	0.75	0.0367	TRUE	0	0	0	1	0	TRUE	ACH-000767
NCIH526_LUNG	TM9SF2--CNTN5	1	2	TM9SF2	1361	chr13:100154031:+	CNTN5	28728	chr11:99426876:+	ONLY_REF_SPLICE	YES	371	2	0.01	0.6	0.0122	0.0245	TM9SF2->chr13:100153671-100216260:+,transmembrane_9_superfamily_member_2,CNTN5->chr11:98891683-100229616:+,contactin_5	NCIH526_LUNG	0.01	0.6	0.0367	FALSE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	VTI1A--RP11-57H14.3	1	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	22	0	0.12	1	0.0122	0.0245	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH526_LUNG	0.12	1	0.0367	FALSE	272	151	14	158	0	FALSE	ACH-000767
NCIH526_LUNG	ALDH1A1--ANXA1	1	1	ALDH1A1	4560	chr9:75567851:-	ANXA1	30154	chr9:75780032:+	ONLY_REF_SPLICE	YES	432	181	0	0.01	0.0122	0.0122	GTEx_v2:{count=2;pct=0.02%;dist=Uterus=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[71315],ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-,ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+	NCIH526_LUNG	0	0.01	0.0244	FALSE	0	0	0	2	0	FALSE	ACH-000767
NCIH526_LUNG	C14orf37--PSMA3	1	1	C14orf37	2258	chr14:58758353:-	PSMA3	24451	chr14:58718837:+	ONLY_REF_SPLICE	YES	0	806	1	0	0.0122	0.0122	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	NCIH526_LUNG	0	1	0.0244	FALSE	1	3	0	9	0	FALSE	ACH-000767
NCIH526_LUNG	GNRHR2--RPS4X	1	1	GNRHR2	4100	chr1:145510728:-	RPS4X	9143	chrX:71496084:-	ONLY_REF_SPLICE	YES	16	22	0.11	0.08	0.0122	0.0122	GNRHR2->chr1:145509752-145516076:-,gonadotropin_releasing_hormone_receptor_2_(pseudogene),RPS4X->chrX:71475529-71497150:-,ribosomal_protein_S4,_X-linked	NCIH526_LUNG	0.08	0.11	0.0244	TRUE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	MB21D2--FGF12	1	1	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	21	132	0.09	0.01	0.0122	0.0122	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	NCIH526_LUNG	0.01	0.09	0.0244	FALSE	0	17	0	46	0	FALSE	ACH-000767
NCIH526_LUNG	RAB3GAP1--UBXN4	1	1	RAB3GAP1	21685	chr2:135911446:+	UBXN4	36162	chr2:136505837:+	ONLY_REF_SPLICE	YES	100	272	0.02	0.01	0.0122	0.0122	RAB3GAP1->RAB3_GTPase_activating_protein_catalytic_subunit_1,chr2:135809835-135933964:+,UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+	NCIH526_LUNG	0.01	0.02	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	RIMS2--ATP6V1C1	1	1	RIMS2	1315	chr8:104513290:+	ATP6V1C1	53017	chr8:104061098:+	ONLY_REF_SPLICE	YES	17	103	0.11	0.02	0.0122	0.0122	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Breast=1},RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+	NCIH526_LUNG	0.02	0.11	0.0244	TRUE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0122	0.0122	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH526_LUNG	1	1	0.0244	TRUE	16	11	2	20	0	FALSE	ACH-000767
NCIH526_LUNG	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0122	0.0122	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH526_LUNG	1	1	0.0244	TRUE	477	1352	189	275	0	FALSE	ACH-000767
NCIH526_LUNG	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0122	0.0122	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH526_LUNG	1	1	0.0244	TRUE	274	363	69	150	0	FALSE	ACH-000767
NCIH526_LUNG	SLC25A3--SFPQ	1	1	SLC25A3	1545	chr12:98987913:+	SFPQ	24974	chr1:35643637:-	ONLY_REF_SPLICE	NO	989	221	0	0.01	0.0122	0.0122	SLC25A3->chr12:98987369-98995946:+,solute_carrier_family_25_member_3,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	NCIH526_LUNG	0	0.01	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000767
NCIH526_LUNG	TRAPPC9--KCNK9	1	1	TRAPPC9	55504	chr8:140898123:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	YES	61	0	0.03	1	0.0122	0.0122	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	NCIH526_LUNG	0.03	1	0.0244	FALSE	7	13	2	16	0	FALSE	ACH-000767
NCIH526_LUNG	TRIT1--PPIE	1	1	TRIT1	1194	chr1:40348990:-	PPIE	34056	chr1:40229361:+	ONLY_REF_SPLICE	YES	157	14	0.01	0.12	0.0122	0.0122	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[77137],TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	NCIH526_LUNG	0.01	0.12	0.0244	FALSE	0	0	0	4	0	FALSE	ACH-000767
NCIH526_LUNG	UVSSA--CTBP1	1	1	UVSSA	8854	chr4:1360219:+	CTBP1	25235	chr4:1232125:-	ONLY_REF_SPLICE	YES	16	328	0.11	0.01	0.0122	0.0122	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH526_LUNG	0.01	0.11	0.0244	FALSE	1	0	0	4	0	FALSE	ACH-000767
HCC1500_BREAST	SLC9A7--ALDH7A1	363	110	SLC9A7	16424	chrX:46472724:-	ALDH7A1	41370	chr5:125885985:-	ONLY_REF_SPLICE	YES	0	148	1	0.76	2.8737	0.8708	{Klijn_CCL:Breast=1},SLC9A7->chrX:46464753-46618490:-,solute_carrier_family_9_member_A7,ALDH7A1->aldehyde_dehydrogenase_7_family_member_A1,chr5:125877533-125931110:-	HCC1500_BREAST	0.76	1	3.7445	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	TIMM23B--LINC00843	147	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.1637	0.2612	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1500_BREAST	0.99	1	1.4249	TRUE	508	994	45	981	0	FALSE	ACH-000349
HCC1500_BREAST	TIMM23--RP11-464F9.1	76	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	344	6	0.19	0.93	0.6016	0.0554	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC1500_BREAST	0.19	0.93	0.657	TRUE	519	3926	326	965	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TN	62	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4908	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1500_BREAST	1	1	0.4908	FALSE	369	2501	205	193	0	FALSE	ACH-000349
HCC1500_BREAST	RP11-444D3.1--SOX5	48	15	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	4	1	0.94	0.38	0.1187	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HCC1500_BREAST	0.94	1	0.4987	TRUE	477	1352	189	275	0	FALSE	ACH-000349
HCC1500_BREAST	RP11-123O10.4--GRIP1	49	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3879	0.0554	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1500_BREAST	1	1	0.4433	FALSE	416	2512	207	587	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TC	48	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.38	0.0317	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1500_BREAST	1	1	0.4117	FALSE	462	80	0	856	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	8	143	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	5	0	0.97	1	0.0633	1.132	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.97	1	1.1953	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	5	143	MT-ND4	1209	chrM:10968:+	MT-ND4L	5470	chrM:10561:+	INCL_NON_REF_SPLICE	YES	3	0	0.98	1	0.0396	1.132	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.98	1	1.1716	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	4	143	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	4	1	0.97	0.99	0.0317	1.132	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.97	0.99	1.1637	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	NRIP1--AF127936.7	37	8	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.96	1	0.2929	0.0633	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1500_BREAST	0.96	1	0.3562	FALSE	292	1546	117	613	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	4	139	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	7	0	0.95	1	0.0317	1.1004	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.95	1	1.1321	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	3	139	MT-ND4	1209	chrM:10968:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	NO	3	2	0.98	0.99	0.0237	1.1004	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.98	0.99	1.1241	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	3	138	MT-ND4	1147	chrM:10906:+	MT-ND4L	5504	chrM:10595:+	INCL_NON_REF_SPLICE	YES	7	2	0.95	0.99	0.0237	1.0925	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.95	0.99	1.1162	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	4	134	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	8	2	0.95	0.99	0.0317	1.0608	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.95	0.99	1.0925	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	13	91	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	2	0.95	0.98	0.1029	0.7204	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.95	0.98	0.8233	FALSE	344	821	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	12	93	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	3	0	0.97	1	0.095	0.7362	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.97	1	0.8312	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	4	124	MT-ND4	1092	chrM:10851:+	MT-ND4L	5537	chrM:10628:+	INCL_NON_REF_SPLICE	YES	8	2	0.94	0.98	0.0317	0.9816	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.94	0.98	1.0133	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND6--MT-TE	33	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.2612	0.0158	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1500_BREAST	0.95	1	0.277	FALSE	499	1288	110	792	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	9	91	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	13	0	0.88	1	0.0712	0.7204	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.88	1	0.7916	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	3	109	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	7	2	0.94	0.98	0.0237	0.8629	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.94	0.98	0.8866	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	3	105	MT-ND4	1285	chrM:11044:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	11	0	0.91	1	0.0237	0.8312	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.91	1	0.8549	FALSE	344	827	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	3	104	MT-ND4	1195	chrM:10954:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	4	0	0.96	1	0.0237	0.8233	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.96	1	0.847	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	3	104	MT-ND4	1216	chrM:10975:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0237	0.8233	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.98	1	0.847	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	RP11-680G10.1--COX4I1	27	4	RP11-680G10.1	1181	chr16:85391249:+	COX4I1	7563	chr16:85834811:+	ONLY_REF_SPLICE	YES	0	566	1	0.05	0.2137	0.0317	RP11-680G10.1->chr16:85391069-85393055:+,COX4I1->chr16:85832239-85840650:+,cytochrome_c_oxidase_subunit_4I1	HCC1500_BREAST	0.05	1	0.2454	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TN	21	27	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1662	0.2137	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1500_BREAST	1	1	0.3799	FALSE	369	2501	205	193	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TN	8	77	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0633	0.6096	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1500_BREAST	1	1	0.6729	FALSE	369	2501	205	193	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	3	95	MT-ND4	1178	chrM:10937:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	6	0	0.94	1	0.0237	0.7521	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.94	1	0.7758	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	3	95	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	13	0	0.88	1	0.0237	0.7521	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.88	1	0.7758	FALSE	344	827	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	4	90	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	13	0	0.88	1	0.0317	0.7125	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.88	1	0.7442	FALSE	344	827	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	4	80	MT-ND4	1503	chrM:11262:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	205	0	0.29	1	0.0317	0.6333	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.29	1	0.665	FALSE	344	827	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND1--MT-RNR2	23	0	MT-ND1	1291	chrM:3597:+	MT-RNR2	5713	chrM:2427:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1821	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1500_BREAST	1	1	0.1821	FALSE	120	26	5	87	0	FALSE	ACH-000349
HCC1500_BREAST	C15orf57--CBX3	20	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	32	30	0.48	0.5	0.1583	0.0792	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1500_BREAST	0.48	0.5	0.2375	TRUE	267	562	48	632	0	FALSE	ACH-000349
HCC1500_BREAST	RP11-96H19.1--RP11-446N19.1	21	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1662	0.0475	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1500_BREAST	1	1	0.2137	FALSE	515	4851	409	746	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	4	73	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	6	0	0.93	1	0.0317	0.5779	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.93	1	0.6096	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TN	22	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1742	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1500_BREAST	1	1	0.1742	FALSE	369	2501	205	193	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	11	43	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	254	0	0.18	1	0.0871	0.3404	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.18	1	0.4275	FALSE	344	827	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND6--MT-TE	21	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.1662	0.0237	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1500_BREAST	0.92	1	0.1899	FALSE	499	1288	110	792	0	FALSE	ACH-000349
HCC1500_BREAST	ARMC4P1--RP11-748L13.2	17	4	ARMC4P1	5853	chr10:27577753:+	RP11-748L13.2	13614	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1346	0.0317	LOCAL_INVERSION:+:-:[42533],ARMC4P1->armadillo_repeat_containing_4_pseudogene_1,chr10:27547691-27577753:+,RP11-748L13.2->chr10:27620286-27630181:-	HCC1500_BREAST	1	1	0.1663	TRUE	1	34	11	8	34	TRUE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	7	43	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	4	0	0.93	1	0.0554	0.3404	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.93	1	0.3958	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TN	5	49	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0.3879	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1500_BREAST	1	1	0.4275	FALSE	369	2501	205	193	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TC	17	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1346	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1500_BREAST	1	1	0.1346	FALSE	462	80	0	856	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TN	11	23	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0871	0.1821	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1500_BREAST	1	1	0.2692	FALSE	369	2501	205	193	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	3	52	MT-ND4	1269	chrM:11028:+	MT-ND4L	5644	chrM:10735:+	INCL_NON_REF_SPLICE	YES	9	0	0.86	1	0.0237	0.4117	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.86	1	0.4354	FALSE	344	827	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	NRIP1--AF127936.7	12	14	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	47	0	0.36	1	0.095	0.1108	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1500_BREAST	0.36	1	0.2058	FALSE	164	806	69	479	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND6--MT-TE	12	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	8	0	0.76	1	0.095	0.1029	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1500_BREAST	0.76	1	0.1979	FALSE	499	1288	110	792	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TN	15	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1187	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1500_BREAST	1	1	0.1187	FALSE	369	2501	205	193	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	4	43	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.0317	0.3404	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.89	1	0.3721	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	7	29	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0554	0.2296	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.95	1	0.285	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TN	5	37	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0.2929	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1500_BREAST	1	1	0.3325	FALSE	369	2501	205	193	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	3	43	MT-ND4	1510	chrM:11269:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	227	0	0.17	1	0.0237	0.3404	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.17	1	0.3641	FALSE	344	827	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	3	43	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	10	0	0.82	1	0.0237	0.3404	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.82	1	0.3641	FALSE	344	827	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	RP11-444D3.1--SOX5	11	11	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	4	1	0.85	0.0871	0.0871	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HCC1500_BREAST	0.85	1	0.1742	TRUE	274	363	69	150	0	FALSE	ACH-000349
HCC1500_BREAST	RP11-58C22.1--CTD-2336H13.2	13	3	RP11-58C22.1	2618	chr16:76669520:+	CTD-2336H13.2	5594	chr16:76770214:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1029	0.0237	GTEx_FI:{Testis=[count:22=pct:21.0]},RP11-58C22.1->chr16:76587314-76669520:+,CTD-2336H13.2->chr16:76770239-76962066:+	HCC1500_BREAST	1	1	0.1266	TRUE	5	3	0	6	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	8	22	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	5	0	0.86	1	0.0633	0.1742	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.86	1	0.2375	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TC	12	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.095	0.0396	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1500_BREAST	1	1	0.1346	FALSE	462	80	0	856	0	FALSE	ACH-000349
HCC1500_BREAST	NRIP1--AF127936.7	11	9	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.43	1	0.0871	0.0712	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1500_BREAST	0.43	1	0.1583	FALSE	125	705	46	456	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TN	13	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1029	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1500_BREAST	1	1	0.1029	FALSE	369	2501	205	193	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TN	4	35	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0.2771	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1500_BREAST	1	1	0.3088	FALSE	369	2501	205	193	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	4	34	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.0317	0.2692	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.88	1	0.3009	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	5	29	MT-ND4	1303	chrM:11062:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	13	0	0.72	1	0.0396	0.2296	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.72	1	0.2692	FALSE	344	827	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	5	29	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0396	0.2296	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.92	1	0.2692	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	3	36	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	3	1	0.93	0.97	0.0237	0.285	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.93	0.97	0.3087	FALSE	344	821	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.095	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC1500_BREAST	1	1	0.095	TRUE	0	0	0	434	0	FALSE	ACH-000349
HCC1500_BREAST	AC009133.14--MT-RNR2	11	2	AC009133.14	2178	chr16:29822129:-	MT-RNR2	7353	chrM:1682:+	INCL_NON_REF_SPLICE	YES	275	0	0.05	1	0.0871	0.0158	AC009133.14->chr16:29819966-29823306:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1500_BREAST	0.05	1	0.1029	FALSE	0	4	0	2	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	3	34	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	6	0	0.86	1	0.0237	0.2692	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.86	1	0.2929	FALSE	344	821	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	7	17	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.0554	0.1346	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.86	1	0.19	FALSE	344	821	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	CTD-2008L17.1--RP11-456O19.2	10	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.0792	0.0237	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HCC1500_BREAST	0.81	1	0.1029	FALSE	20	187	4	79	0	FALSE	ACH-000349
HCC1500_BREAST	NT5C3A--CHSY1	10	3	NT5C3A	13233	chr7:33055282:-	CHSY1	25817	chr15:101719185:-	ONLY_REF_SPLICE	YES	109	18	0.11	0.42	0.0792	0.0237	NT5C3A->5'-nucleotidase,_cytosolic_IIIA,chr7:33053742-33102409:-,CHSY1->chondroitin_sulfate_synthase_1,chr15:101715928-101792137:-	HCC1500_BREAST	0.11	0.42	0.1029	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	3	28	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8	0	0.79	1	0.0237	0.2217	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.79	1	0.2454	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	7	12	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	13	0	0.59	1	0.0554	0.095	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.59	1	0.1504	FALSE	344	827	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	WI2-1896O14.1--RP11-353N4.1	9	3	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0712	0.0237	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	HCC1500_BREAST	1	1	0.0949	TRUE	361	258	24	38	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	6	11	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	13	0	0.57	1	0.0475	0.0871	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.57	1	0.1346	FALSE	344	827	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	3	23	MT-ND4	1170	chrM:10929:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	6	0	0.81	1	0.0237	0.1821	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.81	1	0.2058	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND6--MT-TE	5	15	MT-ND6	1096	chrM:14578:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0396	0.1187	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1500_BREAST	0.95	1	0.1583	FALSE	499	1288	110	792	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND6--MT-TE	4	17	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	8	0	0.72	1	0.0317	0.1346	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1500_BREAST	0.72	1	0.1663	FALSE	499	1288	110	792	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TN	8	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0633	0.0079	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1500_BREAST	1	1	0.0712	FALSE	369	2501	205	193	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	5	12	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	4	0	0.81	1	0.0396	0.095	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.81	1	0.1346	FALSE	344	826	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	C15orf57--CBX3	6	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	31	31	0.3	0.3	0.0475	0.0554	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC1500_BREAST	0.3	0.3	0.1029	TRUE	267	562	48	632	0	FALSE	ACH-000349
HCC1500_BREAST	SPIDR--RP3-511B24.6	7	1	SPIDR	28232	chr8:48614577:+	RP3-511B24.6	43259	chr20:39825317:+	ONLY_REF_SPLICE	YES	69	1	0.1	0.89	0.0554	0.0079	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,RP3-511B24.6->chr20:39809096-39825427:+	HCC1500_BREAST	0.1	0.89	0.0633	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	CTD-3116E22.6--ZNF274	7	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	HCC1500_BREAST	1	1	0.0554	TRUE	0	0	0	13	0	TRUE	ACH-000349
HCC1500_BREAST	IFT140--ERN1	6	2	IFT140	14218	chr16:1630760:-	ERN1	51337	chr17:62135353:-	ONLY_REF_SPLICE	YES	25	3	0.24	0.73	0.0475	0.0158	IFT140->chr16:1560428-1662111:-,intraflagellar_transport_140,ERN1->chr17:62116502-62208179:-,endoplasmic_reticulum_to_nucleus_signaling_1	HCC1500_BREAST	0.24	0.73	0.0633	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	CHN2--RALY	6	1	CHN2	23007	chr7:29433326:+	RALY	45878	chr20:32619328:+	ONLY_REF_SPLICE	YES	7	322	0.5	0.02	0.0475	0.0079	CHN2->chimerin_2,chr7:29161890-29553944:+,RALY->RALY_heterogeneous_nuclear_ribonucleoprotein,chr20:32581452-32696114:+	HCC1500_BREAST	0.02	0.5	0.0554	TRUE	0	0	0	1	0	FALSE	ACH-000349
HCC1500_BREAST	RP11-476K15.1--CTD-2015H3.2	6	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10183	chr18:1779897:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0.0079	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	HCC1500_BREAST	1	1	0.0554	FALSE	0	46	0	73	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TN	6	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0475	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1500_BREAST	1	1	0.0475	FALSE	369	2501	205	193	0	FALSE	ACH-000349
HCC1500_BREAST	RP11-444D3.1--SOX5	2	15	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	5	1	0.77	0.0158	0.1187	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HCC1500_BREAST	0.77	1	0.1345	TRUE	160	277	29	98	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	5	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	1	1	0.0396	FALSE	344	821	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND6--MT-TE	3	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0237	0.0633	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1500_BREAST	0.85	1	0.087	FALSE	499	1288	110	792	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TN	5	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1500_BREAST	1	1	0.0396	FALSE	369	2501	205	193	0	FALSE	ACH-000349
HCC1500_BREAST	RP11-155G15.2--RP11-1E3.1	5	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HCC1500_BREAST	1	1	0.0396	FALSE	46	201	11	112	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TC	3	5	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0237	0.0396	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1500_BREAST	1	1	0.0633	FALSE	462	80	0	856	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TN	4	1	MT-TA	1023	chrM:5633:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0.0079	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1500_BREAST	1	1	0.0396	FALSE	369	2501	205	193	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND1--MT-RNR2	3	4	MT-ND1	1308	chrM:3614:+	MT-RNR2	5013	chrM:1727:+	INCL_NON_REF_SPLICE	YES	4	0	0.64	1	0.0237	0.0317	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC1500_BREAST	0.64	1	0.0554	FALSE	114	26	4	85	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1500_BREAST	1	1	0.0317	FALSE	369	2501	205	193	0	FALSE	ACH-000349
HCC1500_BREAST	MT-TA--MT-TN	4	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC1500_BREAST	1	1	0.0317	FALSE	369	2501	205	193	0	FALSE	ACH-000349
HCC1500_BREAST	RP11-644C3.1--RP11-71G7.1	4	0	RP11-644C3.1	5443	chr3:176361844:-	RP11-71G7.1	12960	chr3:176322474:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	NEIGHBORS[8409],RP11-644C3.1->chr3:176361729-176585626:-,RP11-71G7.1->chr3:176321931-176353320:-	HCC1500_BREAST	1	1	0.0317	FALSE	0	5	0	2	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	3	3	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0237	0.0237	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	0.6	1	0.0474	FALSE	344	821	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	RP11-680G10.1--COX4I1	3	2	RP11-680G10.1	1181	chr16:85391249:+	COX4I1	10517	chr16:85838543:+	ONLY_REF_SPLICE	YES	0	2032	1	0	0.0237	0.0158	RP11-680G10.1->chr16:85391069-85393055:+,COX4I1->chr16:85832239-85840650:+,cytochrome_c_oxidase_subunit_4I1	HCC1500_BREAST	0	1	0.0395	FALSE	0	0	0	1	0	FALSE	ACH-000349
HCC1500_BREAST	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0.0475	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1500_BREAST	1	1	0.0633	FALSE	192	492	57	212	0	FALSE	ACH-000349
HCC1500_BREAST	AL035610.2--AP001604.3	3	1	AL035610.2	7972	chr21:29535921:-	AP001604.3	16956	chr21:28771893:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0.0079	AL035610.2->chr21:29488413-29600986:-,AP001604.3->chr21:28731204-28820898:-	HCC1500_BREAST	1	1	0.0316	TRUE	0	2	0	3	2	TRUE	ACH-000349
HCC1500_BREAST	CHN2--RALY	3	1	CHN2	19773	chr7:29407603:+	RALY	45878	chr20:32619328:+	ONLY_REF_SPLICE	YES	6	322	0.4	0.01	0.0237	0.0079	CHN2->chimerin_2,chr7:29161890-29553944:+,RALY->RALY_heterogeneous_nuclear_ribonucleoprotein,chr20:32581452-32696114:+	HCC1500_BREAST	0.01	0.4	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND4--MT-ND4L	3	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0237	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1500_BREAST	1	1	0.0237	FALSE	344	821	44	306	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0237	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1500_BREAST	1	1	0.0237	FALSE	499	1288	110	792	0	FALSE	ACH-000349
HCC1500_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0237	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1500_BREAST	1	1	0.0237	FALSE	499	1288	110	792	0	FALSE	ACH-000349
HCC1500_BREAST	TIMM23B--LINC00843	3	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1500_BREAST	1	1	0.0237	TRUE	62	24	1	171	0	FALSE	ACH-000349
HCC1500_BREAST	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0079	0.0475	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1500_BREAST	1	1	0.0554	FALSE	275	511	55	178	0	FALSE	ACH-000349
HCC1500_BREAST	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0079	0.0475	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1500_BREAST	1	1	0.0554	FALSE	407	2205	196	549	0	FALSE	ACH-000349
HCC1500_BREAST	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	37	1	0.07	0.0158	0.0079	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1500_BREAST	0.07	1	0.0237	TRUE	465	1949	224	605	0	FALSE	ACH-000349
HCC1500_BREAST	ARPC5L--RAD51	2	0	ARPC5L	7754	chr9:127637430:+	RAD51	17641	chr15:40998375:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0	ARPC5L->actin_related_protein_2/3_complex_subunit_5-like,chr9:127624409-127640003:+,RAD51->ArcherDX_panel,FoundationOne_panel,RAD51_recombinase,chr15:40986972-41024354:+	HCC1500_BREAST	1	1	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	ATF6B--SHKBP1	2	0	ATF6B	4790	chr6:32088548:-	SHKBP1	22359	chr19:41092680:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0	ATF6B->activating_transcription_factor_6_beta,chr6:32065953-32096030:-,SHKBP1->SH3KBP1_binding_protein_1,chr19:41082757-41097305:+	HCC1500_BREAST	1	1	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	CMTM8--CMTM7	2	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	HCC1500_BREAST	1	1	0.0158	FALSE	118	557	29	88	0	FALSE	ACH-000349
HCC1500_BREAST	CPSF6--CHMP1A	2	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HCC1500_BREAST	1	1	0.0158	TRUE	95	74	6	34	0	FALSE	ACH-000349
HCC1500_BREAST	FADS2--TMEM258	2	0	FADS2	1049	chr11:61560500:+	TMEM258	29821	chr11:61558074:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[178],FADS2->chr11:61560452-61634826:+,fatty_acid_desaturase_2,TMEM258->chr11:61535973-61560274:-,transmembrane_protein_258	HCC1500_BREAST	1	1	0.0158	TRUE	0	2	0	5	2	TRUE	ACH-000349
HCC1500_BREAST	RP11-30J20.1--EIF3H	2	0	RP11-30J20.1	2293	chr8:137549302:+	EIF3H	28030	chr8:117671219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0	RP11-30J20.1->chr8:137543041-137997178:+,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	HCC1500_BREAST	1	1	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	RP11-89K10.1--PCAT1	2	0	RP11-89K10.1	2156	chr8:127601535:+	PCAT1	14438	chr8:127889917:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0	RP11-89K10.1->chr8:127570120-127725660:+,PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding)	HCC1500_BREAST	1	1	0.0158	TRUE	0	4	0	4	4	TRUE	ACH-000349
HCC1500_BREAST	SS18L1--TAF4	2	0	SS18L1	1124	chr20:60718945:+	TAF4	21561	chr20:60589763:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0	GTEx_FI:{Skin=[count:2=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Pancreas=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[77956],SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-	HCC1500_BREAST	1	1	0.0158	TRUE	2	5	0	8	0	FALSE	ACH-000349
HCC1500_BREAST	UQCC1--FER1L4	2	0	UQCC1	4118	chr20:33981895:-	FER1L4	44269	chr20:34153143:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0	UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,FER1L4->chr20:34146507-34195484:-,fer-1_like_family_member_4,_pseudogene	HCC1500_BREAST	1	1	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	PUM1--SNRNP40	1	2	PUM1	6137	chr1:31501643:-	SNRNP40	44418	chr1:31734479:-	ONLY_REF_SPLICE	NO	71	90	0.04	0.03	0.0079	0.0158	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,SNRNP40->chr1:31732417-31769662:-,small_nuclear_ribonucleoprotein_U5_subunit_40	HCC1500_BREAST	0.03	0.04	0.0237	TRUE	0	0	0	1	0	FALSE	ACH-000349
HCC1500_BREAST	CTD-2008L17.1--RP11-456O19.2	1	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	3	1	0.4	0.67	0.0079	0.0079	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HCC1500_BREAST	0.4	0.67	0.0158	FALSE	33	240	4	98	0	FALSE	ACH-000349
HCC1500_BREAST	FGD4--MRGPRG-AS1	1	1	FGD4	1431	chr12:32552893:+	MRGPRG-AS1	40721	chr11:3242800:+	ONLY_REF_SPLICE	YES	12	0	0.14	1	0.0079	0.0079	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,MRGPRG-AS1->MRGPRG_antisense_RNA_1,chr11:3239562-3244361:+	HCC1500_BREAST	0.14	1	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000349
HCC1500_BREAST	FSIP1--RP11-624L4.1	1	1	FSIP1	15137	chr15:39893046:-	RP11-624L4.1	27601	chr15:39363809:-	ONLY_REF_SPLICE	YES	73	0	0.03	1	0.0079	0.0079	GTEx_FI:{Breast=[count:2=pct:1.8],Brain=[count:1=pct:0.2]},FSIP1->chr15:39892232-40075031:-,fibrous_sheath_interacting_protein_1,RP11-624L4.1->chr15:39157523-39719396:-	HCC1500_BREAST	0.03	1	0.0158	TRUE	3	181	3	5	0	FALSE	ACH-000349
HCC1500_BREAST	TMEM223--SLC3A2	1	1	TMEM223	1343	chr11:62559151:-	SLC3A2	16887	chr11:62650380:+	ONLY_REF_SPLICE	YES	166	208	0.01	0.01	0.0079	0.0079	LOCAL_INVERSION:-:+:[64025],TMEM223->chr11:62539101-62559493:-,transmembrane_protein_223,SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2	HCC1500_BREAST	0.01	0.01	0.0158	FALSE	0	1	0	3	0	FALSE	ACH-000349
HCC1500_BREAST	WNK2--FGD3	1	1	WNK2	1695	chr9:95947892:+	FGD3	57760	chr9:95792156:+	ONLY_REF_SPLICE	YES	10	65	0.17	0.03	0.0079	0.0079	WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+,FGD3->FYVE,_RhoGEF_and_PH_domain_containing_3,chr9:95709733-95798518:+	HCC1500_BREAST	0.03	0.17	0.0158	TRUE	0	0	0	1	0	FALSE	ACH-000349
HCC1500_BREAST	YTHDF1--DDX5	1	1	YTHDF1	2738	chr20:61845216:-	DDX5	15079	chr17:62500960:-	ONLY_REF_SPLICE	YES	99	1674	0.02	0	0.0079	0.0079	YTHDF1->YTH_N6-methyladenosine_RNA_binding_protein_1,chr20:61826781-61847586:-,DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-	HCC1500_BREAST	0	0.02	0.0158	FALSE	0	0	0	1	0	FALSE	ACH-000349
DV90_LUNG	AC104389.28--HBE1	1136	0	AC104389.28	1084	chr11:5526799:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	10.9248	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DV90_LUNG	1	1	10.9248	TRUE	0	16	0	53	13	FALSE	ACH-000925
DV90_LUNG	AC104389.28--HBE1	166	0	AC104389.28	1084	chr11:5526799:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.5964	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DV90_LUNG	1	1	1.5964	TRUE	0	11	0	26	8	FALSE	ACH-000925
DV90_LUNG	AP003900.6--AC011718.2	127	10	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	8	0	0.94	1	1.2213	0.0962	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	DV90_LUNG	0.94	1	1.3175	TRUE	0	3	0	38	3	FALSE	ACH-000925
DV90_LUNG	PLCE1--CYP2C19	77	29	PLCE1	7747	chr10:95931253:+	CYP2C19	57874	chr10:96540256:+	ONLY_REF_SPLICE	YES	13	2	0.89	0.98	0.7405	0.2789	PLCE1->chr10:95753746-96092580:+,phospholipase_C_epsilon_1,CYP2C19->chr10:96447911-96613017:+,cytochrome_P450_family_2_subfamily_C_member_19	DV90_LUNG	0.89	0.98	1.0194	TRUE	0	0	0	1	0	TRUE	ACH-000925
DV90_LUNG	AC104389.28--HBE1	78	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.7501	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DV90_LUNG	1	1	0.7501	TRUE	0	16	0	53	13	FALSE	ACH-000925
DV90_LUNG	AP003900.6--AC011718.2	60	33	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	8	0	0.92	1	0.577	0.3174	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	DV90_LUNG	0.92	1	0.8944	TRUE	0	5	0	45	5	FALSE	ACH-000925
DV90_LUNG	TIMM23B--LINC00843	64	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6155	0.125	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DV90_LUNG	1	1	0.7405	TRUE	508	994	45	981	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	15	176	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	24	1	0.89	0.99	0.1443	1.6926	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.89	0.99	1.8369	FALSE	344	826	44	306	0	FALSE	ACH-000925
DV90_LUNG	METTL2A--EFCAB3	48	14	METTL2A	3850	chr17:60505198:+	EFCAB3	23877	chr17:60483841:+	ONLY_REF_SPLICE	YES	81	0	0.43	1	0.4616	0.1346	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[7391],METTL2A->chr17:60501228-60527454:+,methyltransferase_like_2A,EFCAB3->EF-hand_calcium_binding_domain_3,chr17:60447579-60493837:+	DV90_LUNG	0.43	1	0.5962	TRUE	0	0	0	1	0	TRUE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	5	178	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	25	1	0.88	0.99	0.0481	1.7118	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.88	0.99	1.7599	FALSE	344	826	44	306	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	4	179	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	24	0	0.88	1	0.0385	1.7214	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.88	1	1.7599	FALSE	344	827	44	306	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	3	182	MT-ND4	1483	chrM:11242:+	MT-ND4L	5492	chrM:10583:+	INCL_NON_REF_SPLICE	YES	207	4	0.47	0.98	0.0289	1.7503	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.47	0.98	1.7792	FALSE	344	827	44	306	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	4	176	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	13	5	0.93	0.97	0.0385	1.6926	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.93	0.97	1.7311	FALSE	344	826	44	306	0	FALSE	ACH-000925
DV90_LUNG	AC104389.28--HBE1	42	12	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	15	0	0.78	1	0.4039	0.1154	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DV90_LUNG	0.78	1	0.5193	TRUE	0	48	0	65	48	FALSE	ACH-000925
DV90_LUNG	RP11-344E13.3--UBBP4	31	48	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	123	2	0.39	0.98	0.2981	0.4616	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	DV90_LUNG	0.39	0.98	0.7597	TRUE	23	13	0	54	0	FALSE	ACH-000925
DV90_LUNG	TIMM23--RP11-464F9.1	40	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	184	5	0.19	0.9	0.3847	0.0385	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DV90_LUNG	0.19	0.9	0.4232	TRUE	519	3926	326	965	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	6	125	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	0	0.96	1	0.0577	1.2021	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.96	1	1.2598	FALSE	344	821	44	306	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	6	122	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	26	2	0.83	0.98	0.0577	1.1733	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.83	0.98	1.231	FALSE	344	826	44	306	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	3	124	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	13	1	0.91	0.99	0.0289	1.1925	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.91	0.99	1.2214	FALSE	344	826	44	306	0	FALSE	ACH-000925
DV90_LUNG	MT-TA--MT-TC	32	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3077	0.0385	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DV90_LUNG	1	1	0.3462	FALSE	462	80	0	856	0	FALSE	ACH-000925
DV90_LUNG	HSP90AB1--MT-RNR2	32	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3148	0	0.01	1	0.3077	0.0192	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DV90_LUNG	0.01	1	0.3269	FALSE	13	9	0	364	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	3	118	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	31	2	0.8	0.98	0.0289	1.1348	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.8	0.98	1.1637	FALSE	344	827	44	306	0	FALSE	ACH-000925
DV90_LUNG	MT-ND6--MT-TE	29	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2789	0.0481	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DV90_LUNG	1	1	0.327	FALSE	499	1288	110	792	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	5	94	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	19	2	0.84	0.98	0.0481	0.904	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.84	0.98	0.9521	FALSE	344	826	44	306	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	15	40	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	339	2	0.14	0.96	0.1443	0.3847	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.14	0.96	0.529	FALSE	344	827	44	306	0	FALSE	ACH-000925
DV90_LUNG	AP003900.6--AC011718.2	20	15	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	13	0	0.73	1	0.1923	0.1443	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	DV90_LUNG	0.73	1	0.3366	TRUE	0	0	0	21	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	13	42	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	9969	2	0.01	0.96	0.125	0.4039	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.01	0.96	0.5289	FALSE	328	800	43	304	0	FALSE	ACH-000925
DV90_LUNG	RP11-680G10.1--GSE1	20	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	1	3	0.96	0.88	0.1923	0.0289	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DV90_LUNG	0.88	0.96	0.2212	TRUE	465	1949	224	605	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	9	40	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	22	2	0.69	0.96	0.0866	0.3847	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.69	0.96	0.4713	FALSE	344	826	44	306	0	FALSE	ACH-000925
DV90_LUNG	IMMP2L--DOCK4	18	2	IMMP2L	4976	chr7:111127294:-	DOCK4	37048	chr7:111517242:-	ONLY_REF_SPLICE	YES	24	6	0.45	0.77	0.1731	0.0192	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	DV90_LUNG	0.45	0.77	0.1923	TRUE	0	1	0	1	1	TRUE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	12	25	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	382	1	0.09	0.97	0.1154	0.2404	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.09	0.97	0.3558	FALSE	344	827	44	306	0	FALSE	ACH-000925
DV90_LUNG	MT-ND6--MT-TE	17	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1635	0.0481	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DV90_LUNG	1	1	0.2116	FALSE	499	1288	110	792	0	FALSE	ACH-000925
DV90_LUNG	AP003900.6--AC011718.2	17	4	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	8	0	0.72	1	0.1635	0.0385	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	DV90_LUNG	0.72	1	0.202	TRUE	0	1	0	26	1	FALSE	ACH-000925
DV90_LUNG	HSP90AB1--MT-RNR2	17	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3209	0	0.01	1	0.1635	0.0192	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DV90_LUNG	0.01	1	0.1827	FALSE	13	9	0	364	0	FALSE	ACH-000925
DV90_LUNG	MT-ND6--MT-TE	12	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.1154	0.1443	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DV90_LUNG	0.93	1	0.2597	FALSE	499	1288	110	792	0	FALSE	ACH-000925
DV90_LUNG	AP003900.6--AC011718.2	11	16	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	8	0	0.77	1	0.1058	0.1539	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	DV90_LUNG	0.77	1	0.2597	TRUE	0	1	0	20	1	FALSE	ACH-000925
DV90_LUNG	RP11-6N13.1--CTD-2374C24.1	14	3	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1346	0.0289	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	DV90_LUNG	1	1	0.1635	TRUE	5	4	0	46	0	FALSE	ACH-000925
DV90_LUNG	AP003900.6--AC011718.2	14	2	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	8	7	0.67	0.7	0.1346	0.0192	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	DV90_LUNG	0.67	0.7	0.1538	TRUE	0	1	0	21	1	FALSE	ACH-000925
DV90_LUNG	MT-ATP6--MT-CO1	14	1	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	YES	4924	15610	0	0	0.1346	0.0096	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DV90_LUNG	0	0	0.1442	FALSE	183	104	9	328	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	8	25	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	198	1	0.14	0.97	0.0769	0.2404	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.14	0.97	0.3173	FALSE	344	827	44	306	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	4	40	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	24	2	0.65	0.96	0.0385	0.3847	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.65	0.96	0.4232	FALSE	344	827	44	306	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	7	25	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	24	1	0.57	0.97	0.0673	0.2404	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.57	0.97	0.3077	FALSE	344	826	44	306	0	FALSE	ACH-000925
DV90_LUNG	AC104389.28--HBE1	13	0	AC104389.28	1084	chr11:5526799:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.125	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DV90_LUNG	1	1	0.125	TRUE	0	16	0	53	13	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	3	40	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	19	2	0.69	0.96	0.0289	0.3847	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.69	0.96	0.4136	FALSE	344	826	44	306	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	3	40	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	6789	2	0.01	0.96	0.0289	0.3847	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.01	0.96	0.4136	FALSE	344	827	44	306	0	FALSE	ACH-000925
DV90_LUNG	AP003900.6--AC011718.2	3	36	AP003900.6	3299	chr21:11174002:+	AC011718.2	10130	chr22:20656894:-	INCL_NON_REF_SPLICE	YES	8	0	0.83	1	0.0289	0.3462	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	DV90_LUNG	0.83	1	0.3751	TRUE	0	0	0	3	0	TRUE	ACH-000925
DV90_LUNG	AC104389.28--HBE1	11	0	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1058	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DV90_LUNG	1	1	0.1058	TRUE	0	11	0	26	8	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	4	24	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	4	2	0.88	0.93	0.0385	0.2308	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.88	0.93	0.2693	FALSE	344	821	44	306	0	FALSE	ACH-000925
DV90_LUNG	MT-TL1--MT-RNR2	10	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0962	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DV90_LUNG	1	1	0.0962	FALSE	7	521	16	32	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	3	27	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10688	1	0	0.97	0.0289	0.2597	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0	0.97	0.2886	FALSE	343	822	44	305	0	FALSE	ACH-000925
DV90_LUNG	AP003900.6--AC011718.2	7	9	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	8	7	0.67	0.7	0.0673	0.0866	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	DV90_LUNG	0.67	0.7	0.1539	TRUE	0	1	0	24	1	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	3	25	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	26	1	0.52	0.97	0.0289	0.2404	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.52	0.97	0.2693	FALSE	344	826	44	306	0	FALSE	ACH-000925
DV90_LUNG	AC104389.28--HBE1	6	12	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	15	0	0.55	1	0.0577	0.1154	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DV90_LUNG	0.55	1	0.1731	TRUE	0	35	0	55	35	FALSE	ACH-000925
DV90_LUNG	C15orf57--CBX3	7	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	45	26	0.24	0.35	0.0673	0.0673	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DV90_LUNG	0.24	0.35	0.1346	TRUE	267	562	48	632	0	FALSE	ACH-000925
DV90_LUNG	CD2AP--RP11-157D6.1	8	3	CD2AP	2621	chr6:47471176:+	RP11-157D6.1	27196	chr6:47336760:+	INCL_NON_REF_SPLICE	YES	133	0	0.08	1	0.0769	0.0289	CD2AP->CD2-associated_protein,chr6:47445525-47594999:+,RP11-157D6.1->chr6:47336679-47336966:+	DV90_LUNG	0.08	1	0.1058	TRUE	0	0	0	1	0	TRUE	ACH-000925
DV90_LUNG	MT-TA--MT-TC	7	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0673	0.0481	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DV90_LUNG	1	1	0.1154	FALSE	462	80	0	856	0	FALSE	ACH-000925
DV90_LUNG	AC104389.28--HBE1	8	0	AC104389.28	1093	chr11:5526790:-	HBE1	12705	chr11:5303181:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0769	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DV90_LUNG	1	1	0.0769	TRUE	0	11	0	26	8	FALSE	ACH-000925
DV90_LUNG	AC104389.28--HBE1	8	0	AC104389.28	1093	chr11:5526790:-	HBE1	13750	chr11:5291386:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0769	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DV90_LUNG	1	1	0.0769	TRUE	0	16	0	53	13	FALSE	ACH-000925
DV90_LUNG	CALM3--MT-ATP8	8	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0769	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DV90_LUNG	1	1	0.0769	FALSE	12	0	0	26	0	FALSE	ACH-000925
DV90_LUNG	MT-ATP6--MT-CO1	8	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0769	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DV90_LUNG	1	1	0.0769	FALSE	183	104	9	328	0	FALSE	ACH-000925
DV90_LUNG	MT-ND6--MT-TE	3	20	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0289	0.1923	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DV90_LUNG	0.92	1	0.2212	FALSE	499	1288	110	792	0	FALSE	ACH-000925
DV90_LUNG	LST3--PDE3A	7	2	LST3	5989	chr12:21015788:+	PDE3A	31164	chr12:20709594:+	ONLY_REF_SPLICE	YES	98	2	0.08	0.82	0.0673	0.0192	LST3->chr12:20968608-21243179:+,PDE3A->chr12:20522179-20837315:+,phosphodiesterase_3A	DV90_LUNG	0.08	0.82	0.0865	TRUE	0	0	0	1	0	TRUE	ACH-000925
DV90_LUNG	RP11-680G10.1--GSE1	6	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0577	0.0385	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DV90_LUNG	0.91	1	0.0962	TRUE	458	1351	185	561	0	FALSE	ACH-000925
DV90_LUNG	AP003900.6--AC011718.2	4	11	AP003900.6	1122	chr21:11169841:+	AC011718.2	10100	chr22:20656924:-	INCL_NON_REF_SPLICE	YES	8	0	0.65	1	0.0385	0.1058	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	DV90_LUNG	0.65	1	0.1443	TRUE	0	0	0	11	0	TRUE	ACH-000925
DV90_LUNG	MT-ATP6--MT-CO1	6	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3199	16730	0	0	0.0577	0.0289	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DV90_LUNG	0	0	0.0866	FALSE	183	104	9	328	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	4	11	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	25	0	0.38	1	0.0385	0.1058	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.38	1	0.1443	FALSE	344	827	44	306	0	FALSE	ACH-000925
DV90_LUNG	MT-ATP6--MT-CO1	5	4	MT-ATP6	1477	chrM:9003:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	7374	15445	0	0	0.0481	0.0385	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DV90_LUNG	0	0	0.0866	FALSE	183	104	9	328	0	FALSE	ACH-000925
DV90_LUNG	MT-ATP6--MT-CO1	6	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0577	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DV90_LUNG	1	1	0.0577	FALSE	183	104	9	328	0	FALSE	ACH-000925
DV90_LUNG	MT-ND6--MT-TE	3	12	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0.1154	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DV90_LUNG	1	1	0.1443	FALSE	499	1288	110	792	0	FALSE	ACH-000925
DV90_LUNG	AP003900.6--AC011718.2	3	11	AP003900.6	1122	chr21:11169841:+	AC011718.2	10127	chr22:20656897:-	INCL_NON_REF_SPLICE	YES	8	0	0.64	1	0.0289	0.1058	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	DV90_LUNG	0.64	1	0.1347	TRUE	0	0	0	11	0	TRUE	ACH-000925
DV90_LUNG	APP--MT-CO3	5	2	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	1071	10248	0.01	0	0.0481	0.0192	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	DV90_LUNG	0	0.01	0.0673	FALSE	0	0	0	26	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	5	1	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	2	1	0.75	0.86	0.0481	0.0096	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.75	0.86	0.0577	FALSE	344	821	44	306	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	5	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.86	0.0481	0.0096	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.86	1	0.0577	FALSE	344	821	44	306	0	FALSE	ACH-000925
DV90_LUNG	AL139819.1--MT-ATP6	5	0	AL139819.1	2074	chr10:102122470:+	MT-ATP6	6381	chrM:8927:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	AL139819.1->chr10:102121397-102123376:+,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	DV90_LUNG	1	1	0.0481	FALSE	0	0	0	3	0	FALSE	ACH-000925
DV90_LUNG	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DV90_LUNG	1	1	0.0481	FALSE	462	80	0	856	0	FALSE	ACH-000925
DV90_LUNG	MT-TA--MT-TC	3	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0.0577	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DV90_LUNG	1	1	0.0866	FALSE	462	80	0	856	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	4	1	MT-ND4	1056	chrM:10815:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0385	0.0096	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	0.62	1	0.0481	FALSE	344	821	44	306	0	FALSE	ACH-000925
DV90_LUNG	MT-TA--MT-TC	3	5	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0.0481	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DV90_LUNG	1	1	0.077	FALSE	462	80	0	856	0	FALSE	ACH-000925
DV90_LUNG	RP11-114H23.1--RP11-114H23.2	4	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0.0096	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	DV90_LUNG	1	1	0.0481	FALSE	81	155	12	160	0	FALSE	ACH-000925
DV90_LUNG	AC104389.28--HBE1	4	0	AC104389.28	1302	chr11:5526581:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DV90_LUNG	1	1	0.0385	TRUE	0	16	0	53	13	FALSE	ACH-000925
DV90_LUNG	AC104389.28--HBE1	4	0	AC104389.28	1084	chr11:5526799:-	HBE1	14230	chr11:5290906:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DV90_LUNG	1	1	0.0385	TRUE	0	16	0	53	13	FALSE	ACH-000925
DV90_LUNG	C15orf57--CBX3	3	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	41	29	0.15	0.19	0.0289	0.0385	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DV90_LUNG	0.15	0.19	0.0674	TRUE	267	562	48	632	0	FALSE	ACH-000925
DV90_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DV90_LUNG	1	1	0.0385	FALSE	183	104	9	328	0	FALSE	ACH-000925
DV90_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1170	chrM:8696:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DV90_LUNG	1	1	0.0385	FALSE	183	104	9	328	0	FALSE	ACH-000925
DV90_LUNG	AP003900.6--AC011718.2	2	6	AP003900.6	2187	chr21:11172043:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	13	0	0.38	1	0.0192	0.0577	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	DV90_LUNG	0.38	1	0.0769	TRUE	0	0	0	5	0	TRUE	ACH-000925
DV90_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1265	chrM:8791:+	MT-CO1	4998	chrM:6220:+	INCL_NON_REF_SPLICE	NO	14631	15638	0	0	0.0289	0.0192	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DV90_LUNG	0	0	0.0481	FALSE	183	104	9	328	0	FALSE	ACH-000925
DV90_LUNG	AC104389.28--HBE1	2	4	AC104389.28	2951	chr11:5367492:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	24	0	0.2	1	0.0192	0.0385	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DV90_LUNG	0.2	1	0.0577	TRUE	0	48	0	65	48	FALSE	ACH-000925
DV90_LUNG	AP003900.6--AC011718.2	2	4	AP003900.6	2187	chr21:11172043:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	13	7	0.32	0.46	0.0192	0.0385	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	DV90_LUNG	0.32	0.46	0.0577	TRUE	0	0	0	4	0	TRUE	ACH-000925
DV90_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1144	chrM:8670:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	DV90_LUNG	1	1	0.0289	FALSE	183	104	9	328	0	FALSE	ACH-000925
DV90_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0289	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	DV90_LUNG	1	1	0.0289	FALSE	344	821	44	306	0	FALSE	ACH-000925
DV90_LUNG	C17orf76-AS1--DOCK1	2	0	C17orf76-AS1	1593	chr17:16342728:+	DOCK1	14358	chr10:128768966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	C17orf76-AS1->chr17:16342136-16381992:+,DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1	DV90_LUNG	1	1	0.0192	TRUE	0	3	0	2	1	TRUE	ACH-000925
DV90_LUNG	EDF1--ABCA2	2	0	EDF1	3072	chr9:139757358:-	ABCA2	8701	chr9:139918688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,ABCA2->ATP_binding_cassette_subfamily_A_member_2,chr9:139901686-139923367:-	DV90_LUNG	1	1	0.0192	TRUE	0	0	0	2	0	TRUE	ACH-000925
DV90_LUNG	GPRIN3--PAPSS1	2	0	GPRIN3	1396	chr4:90228766:-	PAPSS1	22871	chr4:108622441:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	GPRIN3->GPRIN_family_member_3,chr4:90157537-90229161:-,PAPSS1->3'-phosphoadenosine_5'-phosphosulfate_synthase_1,chr4:108511433-108641608:-	DV90_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000925
DV90_LUNG	MANBA--UBE2D3	2	0	MANBA	1277	chr4:103681875:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	DV90_LUNG	1	1	0.0192	TRUE	12	9	1	12	0	FALSE	ACH-000925
DV90_LUNG	PRDM16--SKI	2	0	PRDM16	1129	chr1:2985860:+	SKI	38277	chr1:2237459:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1]},PRDM16->Oncogene{Bushman},PR_domain_16,chr1:2985732-3355185:+,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	DV90_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000925
DV90_LUNG	SERINC2--SHANK3	2	0	SERINC2	11260	chr1:31902385:+	SHANK3	22804	chr22:51123013:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	SERINC2->chr1:31882412-31907525:+,serine_incorporator_2,SHANK3->SH3_and_multiple_ankyrin_repeat_domains_3,chr22:51112843-51171726:+	DV90_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000925
DV90_LUNG	VRK2--FBXO3	2	0	VRK2	16257	chr2:58316858:+	FBXO3	48725	chr11:33763630:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0192	0	VRK2->chr2:58134786-58387055:+,vaccinia_related_kinase_2,FBXO3->F-box_protein_3,chr11:33762485-33796089:-	DV90_LUNG	1	1	0.0192	TRUE	0	0	0	1	0	TRUE	ACH-000925
DV90_LUNG	LONP1--TUBB4B	1	1	LONP1	13839	chr19:5699038:-	TUBB4B	23255	chr9:140136363:+	ONLY_REF_SPLICE	YES	385	1991	0.01	0	0.0096	0.0096	LONP1->chr19:5691845-5720583:-,lon_peptidase_1,_mitochondrial,TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb	DV90_LUNG	0	0.01	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000925
DV90_LUNG	LST3--PDE3A	1	1	LST3	5989	chr12:21015788:+	PDE3A	34037	chr12:20766377:+	ONLY_REF_SPLICE	YES	98	1	0.02	0.67	0.0096	0.0096	LST3->chr12:20968608-21243179:+,PDE3A->chr12:20522179-20837315:+,phosphodiesterase_3A	DV90_LUNG	0.02	0.67	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000925
DV90_LUNG	PAK4--ACTN4	1	1	PAK4	1150	chr19:39616559:+	ACTN4	21800	chr19:39191240:+	ONLY_REF_SPLICE	YES	44	436	0.04	0	0.0096	0.0096	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+	DV90_LUNG	0	0.04	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000925
DV90_LUNG	PRDM16--SKI	1	1	PRDM16	1129	chr1:2985860:+	SKI	35669	chr1:2234417:+	ONLY_REF_SPLICE	YES	7	48	0.22	0.04	0.0096	0.0096	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1]},PRDM16->Oncogene{Bushman},PR_domain_16,chr1:2985732-3355185:+,SKI->Oncogene{Bushman},SKI_proto-oncogene,chr1:2160134-2241558:+	DV90_LUNG	0.04	0.22	0.0192	TRUE	2	0	0	4	0	FALSE	ACH-000925
DV90_LUNG	RP11-6N13.1--CTD-2374C24.1	1	1	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0096	0.0096	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	DV90_LUNG	1	1	0.0192	TRUE	5	12	0	42	0	FALSE	ACH-000925
NCIH596_LUNG	DDX27--EIF6	229	47	DDX27	1195	chr20:47836078:+	EIF6	23743	chr20:33867921:-	ONLY_REF_SPLICE	YES	105	732	0.72	0.27	2.15	0.4413	{Klijn_CCL:Lung=1},DDX27->DEAD-box_helicase_27,chr20:47835884-47860614:+,EIF6->chr20:33866714-33872788:-,eukaryotic_translation_initiation_factor_6	NCIH596_LUNG	0.27	0.72	2.5913	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	MT-TA--MT-TN	132	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2393	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH596_LUNG	1	1	1.2393	FALSE	369	2501	205	193	0	FALSE	ACH-000628
NCIH596_LUNG	STAU1--TYW1	107	39	STAU1	1252	chr20:47804653:-	TYW1	38206	chr7:66648113:+	ONLY_REF_SPLICE	YES	200	13	0.42	0.92	1.0046	0.3662	STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1,TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog	NCIH596_LUNG	0.42	0.92	1.3708	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	RCOR1--PPM1E	96	41	RCOR1	3802	chr14:103167667:+	PPM1E	24204	chr17:57049493:+	ONLY_REF_SPLICE	YES	11	0	0.93	1	0.9013	0.3849	{Klijn_CCL:Lung=1},RCOR1->REST_corepressor_1,chr14:103058998-103196913:+,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	NCIH596_LUNG	0.93	1	1.2862	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	TIMM23B--LINC00843	71	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.6666	0.2441	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH596_LUNG	0.99	1	0.9107	TRUE	508	994	45	981	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND6--MT-TE	58	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.5445	0.0282	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH596_LUNG	0.98	1	0.5727	FALSE	499	1288	110	792	0	FALSE	ACH-000628
NCIH596_LUNG	OR51S1--TP53I11	54	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.507	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH596_LUNG	1	1	0.507	TRUE	402	216	10	229	0	FALSE	ACH-000628
NCIH596_LUNG	MT-TA--MT-TC	52	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4882	0.0563	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH596_LUNG	1	1	0.5445	FALSE	462	80	0	856	0	FALSE	ACH-000628
NCIH596_LUNG	ADAM15--ZBTB7B	44	35	ADAM15	9222	chr1:155031263:+	ZBTB7B	17391	chr1:154982734:+	ONLY_REF_SPLICE	YES	108	138	0.42	0.36	0.4131	0.3286	LOCAL_REARRANGEMENT:+:[32044],ADAM15->ADAM_metallopeptidase_domain_15,chr1:155023042-155035252:+,ZBTB7B->chr1:154975127-154990998:+,zinc_finger_and_BTB_domain_containing_7B	NCIH596_LUNG	0.36	0.42	0.7417	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	KANSL1--ARL17B	45	16	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	19	17	0.76	0.78	0.4225	0.1502	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH596_LUNG	0.76	0.78	0.5727	TRUE	181	1564	124	196	0	FALSE	ACH-000628
NCIH596_LUNG	ADAM15--ZBTB7B	41	27	ADAM15	9222	chr1:155031263:+	ZBTB7B	19789	chr1:154987131:+	ONLY_REF_SPLICE	YES	108	149	0.39	0.31	0.3849	0.2535	LOCAL_REARRANGEMENT:+:[32044],ADAM15->ADAM_metallopeptidase_domain_15,chr1:155023042-155035252:+,ZBTB7B->chr1:154975127-154990998:+,zinc_finger_and_BTB_domain_containing_7B	NCIH596_LUNG	0.31	0.39	0.6384	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	TIMM23--RP11-464F9.1	44	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	133	1	0.25	0.98	0.4131	0.0094	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH596_LUNG	0.25	0.98	0.4225	TRUE	519	3926	326	965	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	3	158	MT-ND4	1489	chrM:11248:+	MT-ND4L	5385	chrM:10476:+	INCL_NON_REF_SPLICE	YES	252	0	0.39	1	0.0282	1.4834	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.39	1	1.5116	FALSE	344	827	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	3	156	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	8	0	0.95	1	0.0282	1.4646	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.95	1	1.4928	FALSE	344	827	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	3	155	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	8	1	0.95	0.99	0.0282	1.4553	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.95	0.99	1.4835	FALSE	344	826	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	3	154	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	8	2	0.95	0.99	0.0282	1.4459	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.95	0.99	1.4741	FALSE	344	826	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	6	125	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	5	2	0.96	0.98	0.0563	1.1736	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.96	0.98	1.2299	FALSE	344	826	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	8	101	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	1	0.98	0.99	0.0751	0.9483	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.98	0.99	1.0234	FALSE	344	821	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	MT-TA--MT-TN	26	24	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2441	0.2253	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH596_LUNG	1	1	0.4694	FALSE	369	2501	205	193	0	FALSE	ACH-000628
NCIH596_LUNG	LRP6--DUSP16	28	10	LRP6	3924	chr12:12356137:-	DUSP16	42482	chr12:12653616:-	ONLY_REF_SPLICE	YES	5	29	0.88	0.57	0.2629	0.0939	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,DUSP16->chr12:12628829-12715317:-,dual_specificity_phosphatase_16	NCIH596_LUNG	0.57	0.88	0.3568	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	NRIP1--AF127936.7	29	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.84	1	0.2723	0.0188	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH596_LUNG	0.84	1	0.2911	FALSE	292	1546	117	613	0	FALSE	ACH-000628
NCIH596_LUNG	MT-TA--MT-TN	11	72	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.1033	0.676	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH596_LUNG	1	1	0.7793	FALSE	369	2501	205	193	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	3	98	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	9	3	0.92	0.97	0.0282	0.9201	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.92	0.97	0.9483	FALSE	344	826	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	HIST2H2BC--OTUD7B	24	4	HIST2H2BC	1131	chr1:149822209:-	OTUD7B	5810	chr1:149949511:-	INCL_NON_REF_SPLICE	YES	63	14	0.31	0.67	0.2253	0.0376	LOCAL_REARRANGEMENT:-:[87366],HIST2H2BC->chr1:149821760-149822339:-,histone_cluster_2,_H2bc_(pseudogene),OTUD7B->OTU_deubiquitinase_7B,chr1:149909705-149982625:-	NCIH596_LUNG	0.31	0.67	0.2629	TRUE	0	0	0	2	0	TRUE	ACH-000628
NCIH596_LUNG	CARS--OSBPL5	18	19	CARS	18977	chr11:3033425:-	OSBPL5	36298	chr11:3150399:-	ONLY_REF_SPLICE	YES	166	4	0.18	0.9	0.169	0.1784	LOCAL_REARRANGEMENT:-:[29503],CARS->Oncogene{Bushman},chr11:3022152-3078843:-,cysteinyl-tRNA_synthetase,OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5	NCIH596_LUNG	0.18	0.9	0.3474	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	MT-ND6--MT-TE	22	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2066	0.0282	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH596_LUNG	0.96	1	0.2348	FALSE	499	1288	110	792	0	FALSE	ACH-000628
NCIH596_LUNG	RP11-123O10.4--GRIP1	22	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2066	0.0282	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH596_LUNG	1	1	0.2348	FALSE	416	2512	207	587	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND6--MT-TE	18	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	20	0	0.64	1	0.169	0.1596	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH596_LUNG	0.64	1	0.3286	FALSE	499	1288	110	792	0	FALSE	ACH-000628
NCIH596_LUNG	MT-TA--MT-TN	21	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1972	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH596_LUNG	1	1	0.1972	FALSE	369	2501	205	193	0	FALSE	ACH-000628
NCIH596_LUNG	MT-TA--MT-TN	10	43	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0939	0.4037	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH596_LUNG	1	1	0.4976	FALSE	369	2501	205	193	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	9	46	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8403	2	0.01	0.96	0.0845	0.4319	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.01	0.96	0.5164	FALSE	328	800	43	304	0	FALSE	ACH-000628
NCIH596_LUNG	MT-TA--MT-TN	4	57	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0.5352	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH596_LUNG	1	1	0.5728	FALSE	369	2501	205	193	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	9	33	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	222	1	0.16	0.98	0.0845	0.3098	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.16	0.98	0.3943	FALSE	344	827	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	MT-TA--MT-TN	11	25	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1033	0.2347	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH596_LUNG	1	1	0.338	FALSE	369	2501	205	193	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	4	46	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	358	2	0.12	0.96	0.0376	0.4319	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.12	0.96	0.4695	FALSE	344	827	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	MT-TA--MT-TN	4	43	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0.4037	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH596_LUNG	1	1	0.4413	FALSE	369	2501	205	193	0	FALSE	ACH-000628
NCIH596_LUNG	MT-TA--MT-TC	13	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1221	0.0469	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH596_LUNG	1	1	0.169	FALSE	462	80	0	856	0	FALSE	ACH-000628
NCIH596_LUNG	DDX27--EIF6	2	47	DDX27	1195	chr20:47836078:+	EIF6	23032	chr20:33868632:-	ONLY_REF_SPLICE	NO	105	1032	0.32	0.05	0.0188	0.4413	{Klijn_CCL:Lung=1},DDX27->DEAD-box_helicase_27,chr20:47835884-47860614:+,EIF6->chr20:33866714-33872788:-,eukaryotic_translation_initiation_factor_6	NCIH596_LUNG	0.05	0.32	0.4601	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	7	27	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	3	0.92	0.92	0.0657	0.2535	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.92	0.92	0.3192	FALSE	344	821	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	RP11-680G10.1--GSE1	13	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	34	1	0.31	0.1221	0.0188	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH596_LUNG	0.31	1	0.1409	TRUE	465	1949	224	605	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	5	33	MT-ND4	1195	chrM:10954:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9	1	0.81	0.97	0.0469	0.3098	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.81	0.97	0.3567	FALSE	344	826	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND6--MT-TE	7	23	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	19	0	0.61	1	0.0657	0.2159	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH596_LUNG	0.61	1	0.2816	FALSE	499	1288	110	792	0	FALSE	ACH-000628
NCIH596_LUNG	NRIP1--AF127936.7	12	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	25	0	0.38	1	0.1127	0.0282	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH596_LUNG	0.38	1	0.1409	FALSE	125	705	46	456	0	FALSE	ACH-000628
NCIH596_LUNG	ADAM15--ZBTB7B	4	29	ADAM15	9222	chr1:155031263:+	ZBTB7B	19149	chr1:154986491:+	ONLY_REF_SPLICE	YES	108	142	0.23	0.19	0.0376	0.2723	LOCAL_REARRANGEMENT:+:[32044],ADAM15->ADAM_metallopeptidase_domain_15,chr1:155023042-155035252:+,ZBTB7B->chr1:154975127-154990998:+,zinc_finger_and_BTB_domain_containing_7B	NCIH596_LUNG	0.19	0.23	0.3099	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	3	33	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8	1	0.82	0.97	0.0282	0.3098	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.82	0.97	0.338	FALSE	344	826	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	3	31	MT-ND4	1114	chrM:10873:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	5	1	0.87	0.97	0.0282	0.2911	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.87	0.97	0.3193	FALSE	344	826	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	4	25	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	1	1	0.97	0.97	0.0376	0.2347	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.97	0.97	0.2723	FALSE	344	821	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	TNRC18--FSCN1	10	1	TNRC18	6061	chr7:5434071:-	FSCN1	45100	chr7:5642888:+	ONLY_REF_SPLICE	YES	74	1084	0.13	0.01	0.0939	0.0094	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18,FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1	NCIH596_LUNG	0.01	0.13	0.1033	TRUE	0	0	0	1	0	FALSE	ACH-000628
NCIH596_LUNG	HSPBP1--GRK5	10	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0939	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH596_LUNG	1	1	0.0939	TRUE	1	39	0	134	39	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	6	16	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	23	0	0.49	1	0.0563	0.1502	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.49	1	0.2065	FALSE	344	827	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	FTH1--ACTB	9	1	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	5695	6	0	0.62	0.0845	0.0094	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH596_LUNG	0	0.62	0.0939	FALSE	1	0	0	97	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND6--MT-TE	5	16	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0469	0.1502	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH596_LUNG	0.95	1	0.1971	FALSE	499	1288	110	792	0	FALSE	ACH-000628
NCIH596_LUNG	RP11-680G10.1--GSE1	8	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.55	0.0751	0.0282	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH596_LUNG	0.55	1	0.1033	TRUE	458	1351	185	561	0	FALSE	ACH-000628
NCIH596_LUNG	EDEM2--STAU1	8	2	EDEM2	2221	chr20:33859808:-	STAU1	24494	chr20:47790806:-	ONLY_REF_SPLICE	YES	1	205	0.91	0.05	0.0751	0.0188	EDEM2->ER_degradation_enhancing_alpha-mannosidase_like_protein_2,chr20:33703167-33865928:-,STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1	NCIH596_LUNG	0.05	0.91	0.0939	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	FSCN1--TNRC18	8	1	FSCN1	1961	chr7:5633399:+	TNRC18	16694	chr7:5430259:-	ONLY_REF_SPLICE	YES	1031	78	0.01	0.1	0.0751	0.0094	FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1,TNRC18->chr7:5346421-5465045:-,trinucleotide_repeat_containing_18	NCIH596_LUNG	0.01	0.1	0.0845	FALSE	0	0	0	1	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	4	16	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	9	0	0.69	1	0.0376	0.1502	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.69	1	0.1878	FALSE	344	826	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	CXADR--C21orf37	7	2	CXADR	8278	chr21:18937929:+	C21orf37	19471	chr21:18816401:+	ONLY_REF_SPLICE	YES	84	0	0.1	1	0.0657	0.0188	LOCAL_REARRANGEMENT:+:[63197],CXADR->chr21:18884700-18965897:+,coxsackie_virus_and_adenovirus_receptor,C21orf37->chr21:18811208-18821503:+	NCIH596_LUNG	0.1	1	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	CTD-2337A12.1--CAST	7	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0657	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH596_LUNG	1	1	0.0657	TRUE	347	1186	183	220	0	FALSE	ACH-000628
NCIH596_LUNG	MT-TA--MT-TN	7	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0657	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH596_LUNG	1	1	0.0657	FALSE	369	2501	205	193	0	FALSE	ACH-000628
NCIH596_LUNG	SCARB1--UBC	7	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0657	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH596_LUNG	1	1	0.0657	TRUE	55	66	6	101	0	FALSE	ACH-000628
NCIH596_LUNG	NRIP1--AF127936.7	5	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	37	0	0.21	1	0.0469	0.0469	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH596_LUNG	0.21	1	0.0938	FALSE	164	806	69	479	0	FALSE	ACH-000628
NCIH596_LUNG	RP11-444D3.1--SOX5	6	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0563	0.0094	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH596_LUNG	1	1	0.0657	TRUE	477	1352	189	275	0	FALSE	ACH-000628
NCIH596_LUNG	DUSP1--IGFBP3	6	0	DUSP1	3369	chr5:172195830:-	IGFBP3	13711	chr7:45953060:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0	DUSP1->chr5:172195093-172198198:-,dual_specificity_phosphatase_1,IGFBP3->Oncogene{Bushman},chr7:45951949-45961473:-,insulin_like_growth_factor_binding_protein_3	NCIH596_LUNG	1	1	0.0563	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	5	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.7	0.0469	0.0188	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.7	1	0.0657	FALSE	344	821	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	RP1-34H18.1--NAV3	5	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0469	0.0094	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH596_LUNG	1	1	0.0563	TRUE	254	575	65	124	0	FALSE	ACH-000628
NCIH596_LUNG	SRRT--BRI3	5	1	SRRT	4371	chr7:100479862:+	BRI3	17289	chr7:97920423:+	ONLY_REF_SPLICE	YES	64	109	0.09	0.05	0.0469	0.0094	SRRT->chr7:100472733-100486285:+,serrate,_RNA_effector_molecule,BRI3->brain_protein_I3,chr7:97881691-97937162:+	NCIH596_LUNG	0.05	0.09	0.0563	TRUE	0	0	0	1	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH596_LUNG	1	1	0.0469	FALSE	499	1288	110	792	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH596_LUNG	1	1	0.0469	FALSE	499	1288	110	792	0	FALSE	ACH-000628
NCIH596_LUNG	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH596_LUNG	1	1	0.0469	FALSE	462	80	0	856	0	FALSE	ACH-000628
NCIH596_LUNG	MT-TA--MT-TN	5	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH596_LUNG	1	1	0.0469	FALSE	369	2501	205	193	0	FALSE	ACH-000628
NCIH596_LUNG	MT-TA--MT-TN	5	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH596_LUNG	1	1	0.0469	FALSE	369	2501	205	193	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	4	3	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	3	2	0.7	0.78	0.0376	0.0282	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.7	0.78	0.0658	FALSE	344	821	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	MT-TA--MT-TC	3	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0.0657	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH596_LUNG	1	1	0.0939	FALSE	462	80	0	856	0	FALSE	ACH-000628
NCIH596_LUNG	FTH1--ACTB	4	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	6353	6	0	0.5	0.0376	0.0188	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH596_LUNG	0	0.5	0.0564	FALSE	1	0	0	97	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	4	2	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	2	1	0.75	0.86	0.0376	0.0188	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.75	0.86	0.0564	FALSE	344	821	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	4	2	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	1	3	0.86	0.67	0.0376	0.0188	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.67	0.86	0.0564	FALSE	344	821	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	PLXDC1--TAF13	4	2	PLXDC1	27520	chr17:37222840:-	TAF13	38540	chr1:109605627:-	INCL_NON_REF_SPLICE	YES	0	36	1	0.14	0.0376	0.0188	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH596_LUNG	0.14	1	0.0564	TRUE	7	10	0	216	0	FALSE	ACH-000628
NCIH596_LUNG	EMC2--EIF3E	4	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0376	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	NCIH596_LUNG	1	1	0.0376	TRUE	0	0	0	12	0	TRUE	ACH-000628
NCIH596_LUNG	MT-ND4--MT-ND4L	3	4	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	3	3	0.7	0.7	0.0282	0.0376	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH596_LUNG	0.7	0.7	0.0658	FALSE	344	821	44	306	0	FALSE	ACH-000628
NCIH596_LUNG	MT-TA--MT-TN	4	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH596_LUNG	1	1	0.0376	FALSE	369	2501	205	193	0	FALSE	ACH-000628
NCIH596_LUNG	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH596_LUNG	1	1	0.0376	FALSE	369	2501	205	193	0	FALSE	ACH-000628
NCIH596_LUNG	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH596_LUNG	1	1	0.0376	TRUE	22	156	2	142	0	FALSE	ACH-000628
NCIH596_LUNG	YWHAZ--KLF10	4	0	YWHAZ	2460	chr8:101964157:-	KLF10	23145	chr8:103664625:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0376	0	GTEx_FI:{Skin=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Adipose_-_Visceral_(Omentum)=1},YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta,KLF10->Kruppel-like_factor_10,chr8:103661007-103668130:-	NCIH596_LUNG	1	1	0.0376	TRUE	2	0	0	3	0	FALSE	ACH-000628
NCIH596_LUNG	FTH1--ACTB	3	2	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	6668	7	0	0.42	0.0282	0.0188	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH596_LUNG	0	0.42	0.047	FALSE	1	0	0	97	0	FALSE	ACH-000628
NCIH596_LUNG	ANXA2--NARG2	3	1	ANXA2	3600	chr15:60689457:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	YES	198	75	0.02	0.05	0.0282	0.0094	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	NCIH596_LUNG	0.02	0.05	0.0376	TRUE	0	0	0	3	0	FALSE	ACH-000628
NCIH596_LUNG	CXADR--C21orf37	3	1	CXADR	8278	chr21:18937929:+	C21orf37	20589	chr21:18821183:+	ONLY_REF_SPLICE	YES	84	0	0.05	1	0.0282	0.0094	LOCAL_REARRANGEMENT:+:[63197],CXADR->chr21:18884700-18965897:+,coxsackie_virus_and_adenovirus_receptor,C21orf37->chr21:18811208-18821503:+	NCIH596_LUNG	0.05	1	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	NECAB3--RP4-553F4.6	3	1	NECAB3	5047	chr20:32257181:-	RP4-553F4.6	18532	chr20:32383422:-	ONLY_REF_SPLICE	YES	91	0	0.04	1	0.0282	0.0094	NECAB3->N-terminal_EF-hand_calcium_binding_protein_3,chr20:32244893-32262269:-,RP4-553F4.6->chr20:32375179-32398903:-	NCIH596_LUNG	0.04	1	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	6	8	0.4	0.33	0.0282	0.0094	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH596_LUNG	0.33	0.4	0.0376	FALSE	25	145	6	90	0	FALSE	ACH-000628
NCIH596_LUNG	PTPN13--AFF1	3	1	PTPN13	4771	chr4:87593696:+	AFF1	79221	chr4:88056732:+	ONLY_REF_SPLICE	YES	30	46	0.12	0.08	0.0282	0.0094	GTEx&tcga_normals:1/3694=0.03%,PTPN13->Oncogene{Bushman},chr4:87515468-87736324:+,protein_tyrosine_phosphatase,_non-receptor_type_13,AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+	NCIH596_LUNG	0.08	0.12	0.0376	TRUE	0	0	0	1	0	FALSE	ACH-000628
NCIH596_LUNG	USP48--HSPG2	3	1	USP48	1783	chr1:22109317:-	HSPG2	79393	chr1:22166510:-	ONLY_REF_SPLICE	YES	55	231	0.07	0.02	0.0282	0.0094	LOCAL_REARRANGEMENT:-:[38639],USP48->chr1:22004791-22110099:-,ubiquitin_specific_peptidase_48,HSPG2->Oncogene{Bushman},chr1:22148738-22263790:-,heparan_sulfate_proteoglycan_2	NCIH596_LUNG	0.02	0.07	0.0376	TRUE	0	0	0	1	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH596_LUNG	1	1	0.0282	FALSE	499	1288	110	792	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1002	chrM:14672:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH596_LUNG	1	1	0.0282	FALSE	499	1288	110	792	0	FALSE	ACH-000628
NCIH596_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH596_LUNG	1	1	0.0282	FALSE	499	1288	110	792	0	FALSE	ACH-000628
NCIH596_LUNG	LRP6--DUSP16	2	2	LRP6	3924	chr12:12356137:-	DUSP16	43646	chr12:12640121:-	ONLY_REF_SPLICE	YES	5	19	0.44	0.17	0.0188	0.0188	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,DUSP16->chr12:12628829-12715317:-,dual_specificity_phosphatase_16	NCIH596_LUNG	0.17	0.44	0.0376	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	AC011997.1--PLCL1	2	1	AC011997.1	3224	chr2:198636638:+	PLCL1	10736	chr2:198866676:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0188	0.0094	NEIGHBORS[29879],AC011997.1->chr2:198557830-198639547:+,PLCL1->Oncogene{Bushman},chr2:198669426-199437305:+,phospholipase_C_like_1	NCIH596_LUNG	0.75	1	0.0282	FALSE	0	5	0	3	0	FALSE	ACH-000628
NCIH596_LUNG	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0.0094	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH596_LUNG	1	1	0.0282	FALSE	93	270	15	244	0	FALSE	ACH-000628
NCIH596_LUNG	ALDH1A3--CHSY1	2	0	ALDH1A3	2783	chr15:101420211:+	CHSY1	25161	chr15:101775782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ALDH1A3->aldehyde_dehydrogenase_1_family_member_A3,chr15:101417919-101456831:+,CHSY1->chondroitin_sulfate_synthase_1,chr15:101715928-101792137:-	NCIH596_LUNG	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	ANXA2--NARG2	2	0	ANXA2	2915	chr15:60690142:-	NARG2	57689	chr15:60715961:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	LOCAL_REARRANGEMENT:-:[16726],ANXA2->annexin_A2,chr15:60639333-60695082:-,NARG2->chr15:60711808-60771359:-	NCIH596_LUNG	1	1	0.0188	TRUE	0	0	0	3	0	TRUE	ACH-000628
NCIH596_LUNG	ARHGAP23--RP11-894J14.5	2	0	ARHGAP23	1131	chr17:36584792:+	RP11-894J14.5	37713	chr3:53077270:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,RP11-894J14.5->chr3:53003135-53133469:-	NCIH596_LUNG	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	FOXO1--TGIF1	2	0	FOXO1	2015	chr13:41239720:-	TGIF1	24404	chr18:3456352:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+	NCIH596_LUNG	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	KIF22--ZNF638	2	0	KIF22	1111	chr16:29802150:+	ZNF638	22078	chr2:71582849:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	KIF22->chr16:29802040-29816706:+,kinesin_family_member_22,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	NCIH596_LUNG	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	MNT--CTBP1	2	0	MNT	1479	chr17:2303934:-	CTBP1	21303	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	MNT->MAX_network_transcriptional_repressor,chr17:2287354-2304412:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH596_LUNG	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	PRKCH--HIF1A	2	0	PRKCH	27174	chr14:61952374:+	HIF1A	45882	chr14:62187100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	NCIH596_LUNG	1	1	0.0188	TRUE	0	3	0	5	0	TRUE	ACH-000628
NCIH596_LUNG	PYROXD2--KCNMA1	2	0	PYROXD2	5918	chr10:100167339:-	KCNMA1	58903	chr10:78674807:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	PYROXD2->chr10:100143322-100174941:-,pyridine_nucleotide-disulphide_oxidoreductase_domain_2,KCNMA1->chr10:78629359-79398353:-,potassium_calcium-activated_channel_subfamily_M_alpha_1	NCIH596_LUNG	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	RB1--ITM2B	2	0	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	NCIH596_LUNG	1	1	0.0188	TRUE	53	73	8	19	0	FALSE	ACH-000628
NCIH596_LUNG	RCOR1--PPM1E	1	4	RCOR1	3802	chr14:103167667:+	PPM1E	25998	chr17:57057335:+	ONLY_REF_SPLICE	YES	11	29	0.31	0.15	0.0094	0.0376	{Klijn_CCL:Lung=1},RCOR1->REST_corepressor_1,chr14:103058998-103196913:+,PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E	NCIH596_LUNG	0.15	0.31	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	SETD5--SETD5-AS1	2	0	SETD5	1363	chr3:9439661:+	SETD5-AS1	42729	chr3:9433510:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	NEIGHBORS_OVERLAP:+:-:[964],SETD5->SET_domain_containing_5,chr3:9439299-9520924:+,SETD5-AS1->chr3:9391373-9440263:-	NCIH596_LUNG	1	1	0.0188	FALSE	0	0	0	2	0	FALSE	ACH-000628
NCIH596_LUNG	MAP3K5--MAP7	1	2	MAP3K5	1809	chr6:137112848:-	MAP7	41928	chr6:136742937:-	ONLY_REF_SPLICE	YES	20	1	0.13	0.75	0.0094	0.0188	NEIGHBORS[6228],MAP3K5->chr6:136878185-137113656:-,mitogen-activated_protein_kinase_kinase_kinase_5,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	NCIH596_LUNG	0.13	0.75	0.0282	FALSE	0	1	0	1	0	FALSE	ACH-000628
NCIH596_LUNG	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1269	67	0	0.04	0.0094	0.0188	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NCIH596_LUNG	0	0.04	0.0282	FALSE	6	50	7	115	0	FALSE	ACH-000628
NCIH596_LUNG	APOBEC3F--SLC25A18	1	1	APOBEC3F	4980	chr22:39441547:+	SLC25A18	14943	chr22:18062511:+	ONLY_REF_SPLICE	NO	17	0	0.11	1	0.0094	0.0094	APOBEC3F->apolipoprotein_B_mRNA_editing_enzyme_catalytic_subunit_3F,chr22:39436609-39449915:+,SLC25A18->chr22:18043139-18073760:+,solute_carrier_family_25_member_18	NCIH596_LUNG	0.11	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000628
NCIH596_LUNG	CD44--PDHX	1	1	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	823	101	0	0.02	0.0094	0.0094	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	NCIH596_LUNG	0	0.02	0.0188	FALSE	0	20	0	35	2	FALSE	ACH-000628
NCIH596_LUNG	EIF1--COL4A5	1	1	EIF1	1185	chr17:39845321:+	COL4A5	53115	chrX:107929261:+	ONLY_REF_SPLICE	YES	526	149	0	0.01	0.0094	0.0094	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,COL4A5->chrX:107683074-107940775:+,collagen_type_IV_alpha_5	NCIH596_LUNG	0	0.01	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000628
NCIH596_LUNG	FRYL--SLAIN2	1	1	FRYL	4609	chr4:48686690:-	SLAIN2	92621	chr4:48422142:+	ONLY_REF_SPLICE	NO	12	61	0.14	0.03	0.0094	0.0094	GTEx_FI:{Lung=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},GTEx_v2:{count=7;pct=0.08%;dist=Artery_-_Tibial=2,Lung=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[71149],FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,SLAIN2->SLAIN_motif_family_member_2,chr4:48343339-48428229:+	NCIH596_LUNG	0.03	0.14	0.0188	TRUE	1	0	0	1	0	FALSE	ACH-000628
NCIH596_LUNG	HNRNPA2B1--HOXC-AS5	1	1	HNRNPA2B1	1958	chr7:26240192:-	HOXC-AS5	15760	chr12:54331141:-	ONLY_REF_SPLICE	YES	1637	20	0	0.09	0.0094	0.0094	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,HOXC-AS5->chr12:54329112-54333427:-	NCIH596_LUNG	0	0.09	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000628
NCIH596_LUNG	LHFPL2--SCAMP1	1	1	LHFPL2	7033	chr5:77928087:-	SCAMP1	26683	chr5:77684661:+	ONLY_REF_SPLICE	YES	72	32	0.03	0.06	0.0094	0.0094	GTEx_v2:{count=3;pct=0.03%;dist=Breast_-_Mammary_Tissue=1,Brain_-_Hippocampus=1,Adipose_-_Visceral_(Omentum)=1},LOCAL_INVERSION:-:+:[4476],LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,SCAMP1->chr5:77656339-77776562:+,secretory_carrier_membrane_protein_1	NCIH596_LUNG	0.03	0.06	0.0188	TRUE	0	0	0	1	0	FALSE	ACH-000628
NCIH596_LUNG	NECAB3--RP4-553F4.6	1	1	NECAB3	6401	chr20:32254387:-	RP4-553F4.6	18532	chr20:32383422:-	ONLY_REF_SPLICE	NO	106	0	0.02	1	0.0094	0.0094	NECAB3->N-terminal_EF-hand_calcium_binding_protein_3,chr20:32244893-32262269:-,RP4-553F4.6->chr20:32375179-32398903:-	NCIH596_LUNG	0.02	1	0.0188	TRUE	0	0	0	1	0	FALSE	ACH-000628
NCIH596_LUNG	PIM3--SCO2	1	1	PIM3	2299	chr22:50355459:+	SCO2	9567	chr22:50962853:-	ONLY_REF_SPLICE	YES	99	39	0.02	0.05	0.0094	0.0094	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Blood=[count:4=pct:2.3],Whole_Blood=[count:3=pct:2.3]},GTEx_v2:{count=4;pct=0.05%;dist=Whole_Blood=4},PIM3->Oncogene{Bushman},Pim-3_proto-oncogene,_serine/threonine_kinase,chr22:50354161-50357728:+,SCO2->SCO2_cytochrome_c_oxidase_assembly_protein,chr22:50961997-50964868:-	NCIH596_LUNG	0.02	0.05	0.0188	TRUE	7	0	0	1	0	FALSE	ACH-000628
NCIH596_LUNG	SYNCRIP--PNRC1	1	1	SYNCRIP	1996	chr6:86352515:-	PNRC1	23376	chr6:89793472:+	ONLY_REF_SPLICE	YES	105	45	0.02	0.04	0.0094	0.0094	GTEx_v2:{count=2;pct=0.02%;dist=Colon_-_Sigmoid=2},SYNCRIP->chr6:86318053-86353510:-,synaptotagmin_binding_cytoplasmic_RNA_interacting_protein,PNRC1->chr6:89790470-89794879:+,proline_rich_nuclear_receptor_coactivator_1	NCIH596_LUNG	0.02	0.04	0.0188	TRUE	0	0	0	2	0	FALSE	ACH-000628
NCIH596_LUNG	TMEM140--NDUFB2	1	1	TMEM140	1199	chr7:134833022:+	NDUFB2	15374	chr7:140402666:+	ONLY_REF_SPLICE	YES	52	357	0.04	0.01	0.0094	0.0094	TMEM140->chr7:134832824-134850967:+,transmembrane_protein_140,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	NCIH596_LUNG	0.01	0.04	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000628
U2OS_BONE	PALLD--ANXA10	1025	249	PALLD	9116	chr4:169589519:+	ANXA10	47995	chr4:169098891:+	ONLY_REF_SPLICE	YES	249	1	0.84	1	13.3332	3.239	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PALLD->chr4:169418217-169849608:+,palladin,_cytoskeletal_associated_protein,ANXA10->annexin_A10,chr4:169013666-169108841:+	U2OS_BONE	0.84	1	16.5722	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	TIMM23B--LINC00843	97	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2618	0.4293	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	U2OS_BONE	1	1	1.6911	TRUE	508	994	45	981	0	FALSE	ACH-000364
U2OS_BONE	RPS29--POLE2	74	3	RPS29	2383	chr14:50053003:-	POLE2	10944	chr14:50150411:-	ONLY_REF_SPLICE	YES	97	4	0.44	0.95	0.9626	0.039	{Klijn_CCL:Sarcomatoid=1},LOCAL_REARRANGEMENT:-:[44865],RPS29->chr14:50043390-50065408:-,ribosomal_protein_S29,POLE2->chr14:50110273-50155140:-,polymerase_(DNA)_epsilon_2,_accessory_subunit	U2OS_BONE	0.44	0.95	1.0016	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	CLTC--VMP1	52	26	CLTC	1316	chr17:57697534:+	VMP1	53132	chr17:57915656:+	ONLY_REF_SPLICE	YES	464	700	0.14	0.1	0.6764	0.3382	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	U2OS_BONE	0.1	0.14	1.0146	FALSE	0	6	0	10	0	FALSE	ACH-000364
U2OS_BONE	TIMM23--RP11-464F9.1	56	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	253	1	0.19	0.98	0.7284	0.065	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	U2OS_BONE	0.19	0.98	0.7934	TRUE	519	3926	326	965	0	FALSE	ACH-000364
U2OS_BONE	ENOSF1--DLGAP1	53	16	ENOSF1	9574	chr18:688574:-	DLGAP1	30441	chr18:4005201:-	ONLY_REF_SPLICE	YES	32	0	0.68	1	0.6894	0.2081	ENOSF1->chr18:670324-712676:-,enolase_superfamily_member_1,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	U2OS_BONE	0.68	1	0.8975	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RPS29--POLE2	39	35	RPS29	2718	chr14:50052668:-	POLE2	10944	chr14:50150411:-	ONLY_REF_SPLICE	YES	378	4	0.16	0.95	0.5073	0.4553	{Klijn_CCL:Sarcomatoid=1},LOCAL_REARRANGEMENT:-:[44865],RPS29->chr14:50043390-50065408:-,ribosomal_protein_S29,POLE2->chr14:50110273-50155140:-,polymerase_(DNA)_epsilon_2,_accessory_subunit	U2OS_BONE	0.16	0.95	0.9626	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RP11-344E13.3--UBBP4	26	62	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	337	0	0.21	1	0.3382	0.8065	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	U2OS_BONE	0.21	1	1.1447	TRUE	23	13	0	54	0	FALSE	ACH-000364
U2OS_BONE	ZNF654--HMGB2	38	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4943	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	U2OS_BONE	1	1	0.4943	TRUE	0	0	0	518	0	FALSE	ACH-000364
U2OS_BONE	OR51S1--TP53I11	32	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4163	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	U2OS_BONE	1	1	0.4163	TRUE	402	216	10	229	0	FALSE	ACH-000364
U2OS_BONE	TANC2--CHRNA4	23	14	TANC2	16051	chr17:61345234:+	CHRNA4	62293	chr20:61982379:-	ONLY_REF_SPLICE	YES	24	2	0.61	0.95	0.2992	0.1821	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,CHRNA4->cholinergic_receptor_nicotinic_alpha_4_subunit,chr20:61975420-62009753:-	U2OS_BONE	0.61	0.95	0.4813	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	PALLD--ANXA10	8	50	PALLD	5744	chr4:169553051:+	ANXA10	47995	chr4:169098891:+	ONLY_REF_SPLICE	YES	342	1	0.14	0.98	0.1041	0.6504	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PALLD->chr4:169418217-169849608:+,palladin,_cytoskeletal_associated_protein,ANXA10->annexin_A10,chr4:169013666-169108841:+	U2OS_BONE	0.14	0.98	0.7545	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RP11-123O10.4--GRIP1	17	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2211	0.1171	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	U2OS_BONE	1	1	0.3382	FALSE	416	2512	207	587	0	FALSE	ACH-000364
U2OS_BONE	RP11-680G10.1--GSE1	15	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	26	1	0.43	0.1951	0.065	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	U2OS_BONE	0.43	1	0.2601	TRUE	458	1351	185	561	0	FALSE	ACH-000364
U2OS_BONE	MT-TA--MT-TC	15	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1951	0.039	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U2OS_BONE	1	1	0.2341	FALSE	462	80	0	856	0	FALSE	ACH-000364
U2OS_BONE	RP11-634B7.4--TRIM58	12	12	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	26	0.96	0.48	0.1561	0.1561	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	U2OS_BONE	0.48	0.96	0.3122	TRUE	158	633	76	73	0	FALSE	ACH-000364
U2OS_BONE	TBL1XR1--CTD-2611K5.5	14	3	TBL1XR1	1353	chr3:176914909:-	CTD-2611K5.5	34282	chr15:102320319:-	ONLY_REF_SPLICE	YES	7	0	0.71	1	0.1821	0.039	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,CTD-2611K5.5->chr15:102311961-102322192:-	U2OS_BONE	0.71	1	0.2211	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RP11-680G10.1--GSE1	11	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	51	1	0.2	0.1431	0.026	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	U2OS_BONE	0.2	1	0.1691	TRUE	465	1949	224	605	0	FALSE	ACH-000364
U2OS_BONE	NUDT1--HACE1	10	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1301	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	U2OS_BONE	1	1	0.1301	TRUE	1	20	0	20	17	FALSE	ACH-000364
U2OS_BONE	TBL1XR1--CTD-2611K5.5	8	8	TBL1XR1	3252	chr3:176878659:-	CTD-2611K5.5	34282	chr15:102320319:-	ONLY_REF_SPLICE	YES	11	0	0.59	1	0.1041	0.1041	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,CTD-2611K5.5->chr15:102311961-102322192:-	U2OS_BONE	0.59	1	0.2082	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RP11-444D3.1--SOX5	9	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	5	1	0.67	0.1171	0.013	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	U2OS_BONE	0.67	1	0.1301	TRUE	477	1352	189	275	0	FALSE	ACH-000364
U2OS_BONE	PRR16--CTD-2334D19.1	7	6	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	69	0	0.16	1	0.0911	0.078	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	U2OS_BONE	0.16	1	0.1691	FALSE	56	216	12	147	0	FALSE	ACH-000364
U2OS_BONE	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1041	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	U2OS_BONE	1	1	0.1041	FALSE	462	80	0	856	0	FALSE	ACH-000364
U2OS_BONE	RP11-96H19.1--RP11-446N19.1	7	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0911	0.052	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	U2OS_BONE	1	1	0.1431	FALSE	515	4851	409	746	0	FALSE	ACH-000364
U2OS_BONE	CLTC--VMP1	1	27	CLTC	4540	chr17:57725762:+	VMP1	47034	chr17:57851115:+	ONLY_REF_SPLICE	NO	294	156	0.09	0.15	0.013	0.3512	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	U2OS_BONE	0.09	0.15	0.3642	FALSE	0	0	0	1	0	FALSE	ACH-000364
U2OS_BONE	MT-ND6--MT-TE	7	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0911	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	U2OS_BONE	1	1	0.0911	FALSE	499	1288	110	792	0	FALSE	ACH-000364
U2OS_BONE	KANSL1--ARL17B	6	1	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	39	124	0.15	0.05	0.078	0.013	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	U2OS_BONE	0.05	0.15	0.091	TRUE	181	1564	124	196	0	FALSE	ACH-000364
U2OS_BONE	RPS29--POLE2	1	21	RPS29	2718	chr14:50052668:-	POLE2	12045	chr14:50146518:-	ONLY_REF_SPLICE	YES	378	97	0.06	0.18	0.013	0.2732	{Klijn_CCL:Sarcomatoid=1},LOCAL_REARRANGEMENT:-:[44865],RPS29->chr14:50043390-50065408:-,ribosomal_protein_S29,POLE2->chr14:50110273-50155140:-,polymerase_(DNA)_epsilon_2,_accessory_subunit	U2OS_BONE	0.06	0.18	0.2862	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RP11-120D5.1--MID1	6	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.078	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	U2OS_BONE	1	1	0.078	FALSE	16	356	14	466	0	FALSE	ACH-000364
U2OS_BONE	RAB27A--CCPG1	5	3	RAB27A	2305	chr15:55606237:-	CCPG1	34410	chr15:55653142:-	ONLY_REF_SPLICE	YES	2	18	0.8	0.31	0.065	0.039	LOCAL_REARRANGEMENT:-:[20919],RAB27A->RAB27A,_member_RAS_oncogene_family,chr15:55495164-55611311:-,CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-	U2OS_BONE	0.31	0.8	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	MCM5--HMGXB4	4	5	MCM5	6417	chr22:35804556:+	HMGXB4	30792	chr22:35679955:+	ONLY_REF_SPLICE	YES	295	176	0.03	0.05	0.052	0.065	MCM5->Oncogene{Bushman},chr22:35796056-35821423:+,minichromosome_maintenance_complex_component_5,HMGXB4->HMG-box_containing_4,chr22:35653445-35691800:+	U2OS_BONE	0.03	0.05	0.117	TRUE	0	0	0	1	0	FALSE	ACH-000364
U2OS_BONE	YTHDF1--CDH4	5	1	YTHDF1	2738	chr20:61845216:-	CDH4	19899	chr20:60448784:+	ONLY_REF_SPLICE	YES	127	34	0.05	0.15	0.065	0.013	YTHDF1->YTH_N6-methyladenosine_RNA_binding_protein_1,chr20:61826781-61847586:-,CDH4->cadherin_4,chr20:59827482-60515673:+	U2OS_BONE	0.05	0.15	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	AP003900.6--RP11-435B5.4	5	0	AP003900.6	1122	chr21:11169841:+	RP11-435B5.4	9712	chr1:143465438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.065	0	AP003900.6->chr21:11169720-11184046:+,RP11-435B5.4->chr1:143354963-143467632:-	U2OS_BONE	1	1	0.065	TRUE	1	3	0	6	3	TRUE	ACH-000364
U2OS_BONE	CPSF6--CHMP1A	5	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.065	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	U2OS_BONE	1	1	0.065	TRUE	95	74	6	34	0	FALSE	ACH-000364
U2OS_BONE	MT-ND6--MT-TE	4	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.67	1	0.052	0.052	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	U2OS_BONE	0.67	1	0.104	FALSE	499	1288	110	792	0	FALSE	ACH-000364
U2OS_BONE	PTPN2--PSMG2	5	0	PTPN2	2411	chr18:12884072:-	PSMG2	30786	chr18:12706549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.065	0	LOCAL_INVERSION:-:+:[59738],PTPN2->chr18:12785477-12929642:-,protein_tyrosine_phosphatase,_non-receptor_type_2,PSMG2->chr18:12658737-12725739:+,proteasome_assembly_chaperone_2	U2OS_BONE	1	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RAD50--ZNF536	5	0	RAD50	3519	chr5:131895059:+	ZNF536	35026	chr19:30787062:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.065	0	RAD50->ArcherDX_panel,FoundationOne_panel,RAD50_double_strand_break_repair_protein,chr5:131891711-131980313:+,ZNF536->chr19:30719197-31204445:+,zinc_finger_protein_536	U2OS_BONE	1	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RP11-96H19.1--RP11-446N19.1	4	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.052	0.052	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	U2OS_BONE	1	1	0.104	FALSE	407	2205	196	549	0	FALSE	ACH-000364
U2OS_BONE	DOCK1--SH2D5	4	2	DOCK1	1155	chr10:128594132:+	SH2D5	67584	chr1:21051128:-	ONLY_REF_SPLICE	YES	40	16	0.13	0.27	0.052	0.026	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,SH2D5->SH2_domain_containing_5,chr1:21046225-21059330:-	U2OS_BONE	0.13	0.27	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	PTK2--AGO2	4	2	PTK2	2092	chr8:142011224:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	89	1	0.06	0.86	0.052	0.026	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	U2OS_BONE	0.06	0.86	0.078	FALSE	0	6	0	3	0	FALSE	ACH-000364
U2OS_BONE	RPS29--POLE2	4	2	RPS29	2718	chr14:50052668:-	POLE2	14677	chr14:50136316:-	ONLY_REF_SPLICE	YES	378	87	0.02	0.06	0.052	0.026	{Klijn_CCL:Sarcomatoid=1},LOCAL_REARRANGEMENT:-:[44865],RPS29->chr14:50043390-50065408:-,ribosomal_protein_S29,POLE2->chr14:50110273-50155140:-,polymerase_(DNA)_epsilon_2,_accessory_subunit	U2OS_BONE	0.02	0.06	0.078	TRUE	0	0	0	1	0	FALSE	ACH-000364
U2OS_BONE	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	U2OS_BONE	1	1	0.052	TRUE	0	0	0	434	0	FALSE	ACH-000364
U2OS_BONE	ZNF654--HMGB2	4	0	ZNF654	1688	chr3:88188941:+	HMGB2	12568	chr4:174253271:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	U2OS_BONE	1	1	0.052	TRUE	0	0	0	518	0	FALSE	ACH-000364
U2OS_BONE	NUP188--PHYHD1	3	3	NUP188	7453	chr9:131721413:+	PHYHD1	39828	chr9:131689317:+	ONLY_REF_SPLICE	YES	70	2	0.08	0.75	0.039	0.039	{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:+:[5658],NUP188->chr9:131709978-131769375:+,nucleoporin_188kDa,PHYHD1->chr9:131683174-131704320:+,phytanoyl-CoA_dioxygenase_domain_containing_1	U2OS_BONE	0.08	0.75	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	CALM3--MT-ND4L	3	2	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1590	0	0	1	0.039	0.026	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	U2OS_BONE	0	1	0.065	FALSE	1	1	0	107	0	FALSE	ACH-000364
U2OS_BONE	DOCK1--SH2D5	3	2	DOCK1	1155	chr10:128594132:+	SH2D5	65428	chr1:21053568:-	ONLY_REF_SPLICE	YES	40	9	0.11	0.36	0.039	0.026	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,SH2D5->SH2_domain_containing_5,chr1:21046225-21059330:-	U2OS_BONE	0.11	0.36	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	EDIL3--HAPLN1	3	1	EDIL3	1486	chr5:83680126:-	HAPLN1	27143	chr5:82969368:-	ONLY_REF_SPLICE	YES	773	486	0.01	0.01	0.039	0.013	EDIL3->EGF_like_repeats_and_discoidin_domains_3,chr5:83236373-83680611:-,HAPLN1->Oncogene{Bushman},chr5:82933624-83017432:-,hyaluronan_and_proteoglycan_link_protein_1	U2OS_BONE	0.01	0.01	0.052	FALSE	0	0	0	1	0	FALSE	ACH-000364
U2OS_BONE	GPC6--GPC5	3	1	GPC6	1775	chr13:93879869:+	GPC5	27371	chr13:92797083:+	ONLY_REF_SPLICE	YES	60	0	0.06	1	0.039	0.013	HGNC_GENEFAM,PROTCLUST,YOSHIHARA_TCGA_num_samples[HNSC:1|KIRC:1],GPC6->chr13:93879095-95059655:+,glypican_6,GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5	U2OS_BONE	0.06	1	0.052	TRUE	0	1	0	1	1	TRUE	ACH-000364
U2OS_BONE	RC3H1--RP11-160H22.5	3	1	RC3H1	1202	chr1:173991234:-	RP11-160H22.5	36278	chr1:174084787:-	ONLY_REF_SPLICE	YES	6	0	0.4	1	0.039	0.013	LOCAL_REARRANGEMENT:-:[93003],RC3H1->chr1:173900352-173991435:-,ring_finger_and_CCCH-type_domains_1,RP11-160H22.5->chr1:174084438-174129142:-	U2OS_BONE	0.4	1	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	DNM1L--FGD4	3	0	DNM1L	2936	chr12:32854496:+	FGD4	46589	chr12:32760891:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	LOCAL_REARRANGEMENT:+:[33150],DNM1L->chr12:32832134-32898486:+,dynamin_1-like,FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+	U2OS_BONE	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	HMGA2--CHMP1A	3	0	HMGA2	3338	chr12:66221867:+	CHMP1A	31922	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},{Klijn_CCL:Lung=1},HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	U2OS_BONE	1	1	0.039	TRUE	0	1	0	2	0	TRUE	ACH-000364
U2OS_BONE	NCOR2--UBC	3	0	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	U2OS_BONE	1	1	0.039	TRUE	52	148	13	33	0	FALSE	ACH-000364
U2OS_BONE	NCOR2--UBC	3	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	U2OS_BONE	1	1	0.039	TRUE	145	312	16	51	0	FALSE	ACH-000364
U2OS_BONE	NEDD4--PRICKLE1	3	0	NEDD4	9605	chr15:56216844:-	PRICKLE1	44240	chr12:42866366:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	NEDD4->chr15:56119120-56285944:-,neural_precursor_cell_expressed,_developmentally_down-regulated_4,_E3_ubiquitin_protein_ligase,PRICKLE1->chr12:42852140-42984157:-,prickle_planar_cell_polarity_protein_1	U2OS_BONE	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	TBL1XR1--CTD-2611K5.5	2	4	TBL1XR1	2134	chr3:176914128:-	CTD-2611K5.5	34282	chr15:102320319:-	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.026	0.052	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,CTD-2611K5.5->chr15:102311961-102322192:-	U2OS_BONE	0.46	1	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	CEP85L--PRIM2	2	3	CEP85L	8480	chr6:118953616:-	PRIM2	51097	chr6:57512472:+	ONLY_REF_SPLICE	YES	1	127	0.83	0.04	0.026	0.039	CEP85L->centrosomal_protein_85_like,chr6:118781935-119031238:-,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	U2OS_BONE	0.04	0.83	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RP11-123O10.4--GRIP1	1	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.013	0.0911	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	U2OS_BONE	0.89	1	0.1041	FALSE	93	270	15	244	0	FALSE	ACH-000364
U2OS_BONE	STK3--RP11-100L22.2	2	3	STK3	24069	chr8:99608260:-	RP11-100L22.2	39983	chr8:93798288:-	ONLY_REF_SPLICE	YES	40	0	0.11	1	0.026	0.039	STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,RP11-100L22.2->chr8:93711970-93889865:-	U2OS_BONE	0.11	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	AC002055.4--RAB3B	2	2	AC002055.4	4453	chr22:51223721:+	RAB3B	15154	chr1:52403084:-	ONLY_REF_SPLICE	YES	87	9	0.04	0.31	0.026	0.026	AC002055.4->chr22:51195376-51239737:+,RAB3B->RAB3B,_member_RAS_oncogene_family,chr1:52373628-52456436:-	U2OS_BONE	0.04	0.31	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	DOCK1--SH2D5	1	6	DOCK1	1155	chr10:128594132:+	SH2D5	64417	chr1:21054579:-	ONLY_REF_SPLICE	YES	40	6	0.15	0.54	0.013	0.078	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,SH2D5->SH2_domain_containing_5,chr1:21046225-21059330:-	U2OS_BONE	0.15	0.54	0.091	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	PRR16--CTD-2334D19.1	1	6	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	69	0	0.09	1	0.013	0.078	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	U2OS_BONE	0.09	1	0.091	FALSE	1	13	0	24	0	FALSE	ACH-000364
U2OS_BONE	AC002055.4--RAB3B	2	1	AC002055.4	1379	chr22:51195754:+	RAB3B	15154	chr1:52403084:-	ONLY_REF_SPLICE	YES	0	9	1	0.25	0.026	0.013	AC002055.4->chr22:51195376-51239737:+,RAB3B->RAB3B,_member_RAS_oncogene_family,chr1:52373628-52456436:-	U2OS_BONE	0.25	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	DOCK1--SH2D5	2	1	DOCK1	1155	chr10:128594132:+	SH2D5	68485	chr1:21050227:-	ONLY_REF_SPLICE	YES	40	21	0.07	0.12	0.026	0.013	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,SH2D5->SH2_domain_containing_5,chr1:21046225-21059330:-	U2OS_BONE	0.07	0.12	0.039	TRUE	0	0	0	1	0	FALSE	ACH-000364
U2OS_BONE	MYH9--ANKRD11	2	1	MYH9	1212	chr22:36783852:-	ANKRD11	48138	chr16:89484776:-	ONLY_REF_SPLICE	YES	711	1	0	0.75	0.026	0.013	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-	U2OS_BONE	0	0.75	0.039	FALSE	0	0	0	1	0	FALSE	ACH-000364
U2OS_BONE	RP11-444D3.1--CASC1	2	1	RP11-444D3.1	1258	chr12:24715267:-	CASC1	18455	chr12:25311497:-	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.026	0.013	RP11-444D3.1->chr12:24366190-24715524:-,CASC1->cancer_susceptibility_candidate_1,chr12:25261354-25348096:-	U2OS_BONE	0.43	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	ZFAND3--TBC1D22B	2	1	ZFAND3	1518	chr6:37787792:+	TBC1D22B	25979	chr6:37280694:+	ONLY_REF_SPLICE	YES	38	42	0.07	0.07	0.026	0.013	ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3,TBC1D22B->TBC1_domain_family_member_22B,chr6:37225548-37300746:+	U2OS_BONE	0.07	0.07	0.039	TRUE	0	0	0	1	0	FALSE	ACH-000364
U2OS_BONE	CHD8--PTTG1	2	0	CHD8	9216	chr14:21894287:-	PTTG1	36163	chr5:159849309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,PTTG1->Oncogene{Bushman},chr5:159848829-159855748:+,pituitary_tumor-transforming_1	U2OS_BONE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	HMGA2--LUM	2	0	HMGA2	5315	chr12:66232349:+	LUM	30462	chr12:91498096:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,LUM->chr12:91496406-91505608:-,lumican	U2OS_BONE	1	1	0.026	TRUE	0	0	0	8	0	TRUE	ACH-000364
U2OS_BONE	RCC1--MKI67	2	0	RCC1	2175	chr1:28834672:+	MKI67	21977	chr10:129917583:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	U2OS_BONE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	SEH1L--ZSCAN12P1	2	0	SEH1L	3705	chr18:12951904:+	ZSCAN12P1	25844	chr6:28060117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	SEH1L->SEH1_like_nucleoporin,chr18:12947132-12987535:+,ZSCAN12P1->chr6:28058932-28061442:+,zinc_finger_and_SCAN_domain_containing_12_pseudogene_1	U2OS_BONE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RP11-444D3.1--CASC1	1	3	RP11-444D3.1	1258	chr12:24715267:-	CASC1	17160	chr12:25314131:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.013	0.039	RP11-444D3.1->chr12:24366190-24715524:-,CASC1->cancer_susceptibility_candidate_1,chr12:25261354-25348096:-	U2OS_BONE	0.5	1	0.052	TRUE	0	1	0	1	1	TRUE	ACH-000364
U2OS_BONE	PTK2--AGO2	1	2	PTK2	2337	chr8:142010979:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	136	1	0.02	0.75	0.013	0.026	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	U2OS_BONE	0.02	0.75	0.039	FALSE	0	6	0	3	0	FALSE	ACH-000364
U2OS_BONE	RP1-34H18.1--NAV3	1	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.013	0.026	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	U2OS_BONE	1	1	0.039	TRUE	254	575	65	124	0	FALSE	ACH-000364
U2OS_BONE	AC006486.9--NOC4L	1	1	AC006486.9	1155	chr19:42759130:-	NOC4L	13650	chr12:132635803:+	ONLY_REF_SPLICE	YES	1	54	0.67	0.04	0.013	0.013	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},AC006486.9->chr19:42738735-42759284:-,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	U2OS_BONE	0.04	0.67	0.026	TRUE	0	7	0	1	7	TRUE	ACH-000364
U2OS_BONE	IQCE--MAD1L1	1	1	IQCE	1220	chr7:2598851:+	MAD1L1	53847	chr7:2188873:-	ONLY_REF_SPLICE	YES	33	167	0.06	0.01	0.013	0.013	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Frontal_Cortex_(BA9)=1,Testis=1},IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	U2OS_BONE	0.01	0.06	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000364
U2OS_BONE	KDELC2--PICALM	1	1	KDELC2	1268	chr11:108368892:-	PICALM	18464	chr11:85742653:-	ONLY_REF_SPLICE	YES	30	136	0.06	0.01	0.013	0.013	KDELC2->KDEL_motif_containing_2,chr11:108342832-108369159:-,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	U2OS_BONE	0.01	0.06	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000364
U2OS_BONE	MCM5--TTC28	1	1	MCM5	6417	chr22:35804556:+	TTC28	27740	chr22:28702631:-	ONLY_REF_SPLICE	YES	295	10	0.01	0.17	0.013	0.013	MCM5->Oncogene{Bushman},chr22:35796056-35821423:+,minichromosome_maintenance_complex_component_5,TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28	U2OS_BONE	0.01	0.17	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000364
U2OS_BONE	NDUFS5--SH3D21	1	1	NDUFS5	2303	chr1:39494612:+	SH3D21	9675	chr1:36775149:+	ONLY_REF_SPLICE	NO	740	3	0	0.4	0.013	0.013	NDUFS5->NADH:ubiquinone_oxidoreductase_subunit_S5,chr1:39491990-39500308:+,SH3D21->SH3_domain_containing_21,chr1:36771988-36790484:+	U2OS_BONE	0	0.4	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000364
U2OS_BONE	RAB27A--CCPG1	1	1	RAB27A	1183	chr15:55611129:-	CCPG1	34410	chr15:55653142:-	ONLY_REF_SPLICE	NO	3	18	0.4	0.1	0.013	0.013	LOCAL_REARRANGEMENT:-:[20919],RAB27A->RAB27A,_member_RAS_oncogene_family,chr15:55495164-55611311:-,CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-	U2OS_BONE	0.1	0.4	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	1	5	0.67	0.29	0.013	0.013	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	U2OS_BONE	0.29	0.67	0.026	TRUE	274	363	69	150	0	FALSE	ACH-000364
U2OS_BONE	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	57	1	0.03	0.013	0.013	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	U2OS_BONE	0.03	1	0.026	TRUE	64	13	3	59	0	FALSE	ACH-000364
U2OS_BONE	SPATA6--AGBL4	1	1	SPATA6	15965	chr1:48825258:-	AGBL4	36830	chr1:49128913:-	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.013	0.013	LOCAL_REARRANGEMENT:-:[60682],SPATA6->chr1:48761044-48937845:-,spermatogenesis_associated_6,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	U2OS_BONE	0.33	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000364
U2OS_BONE	TTYH3--MAD1L1	1	1	TTYH3	1328	chr7:2671912:+	MAD1L1	46431	chr7:2054277:-	ONLY_REF_SPLICE	YES	216	138	0.01	0.01	0.013	0.013	{Klijn_CCL:Lung=1,Skin=1},TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	U2OS_BONE	0.01	0.01	0.026	FALSE	0	4	0	2	2	FALSE	ACH-000364
U2OS_BONE	WRAP73--ST13	1	1	WRAP73	8118	chr1:3552508:-	ST13	26363	chr22:41226960:-	ONLY_REF_SPLICE	YES	41	715	0.05	0	0.013	0.013	WRAP73->WD_repeat_containing,_antisense_to_TP73,chr1:3547331-3569325:-,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	U2OS_BONE	0	0.05	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000364
U2OS_BONE	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1285	87	0	0.02	0.013	0.013	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	U2OS_BONE	0	0.02	0.026	FALSE	6	50	7	115	0	FALSE	ACH-000364
COLO679_SKIN	TIMM23B--LINC00843	130	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2784	0.2065	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COLO679_SKIN	1	1	1.4849	TRUE	508	994	45	981	0	FALSE	ACH-000805
COLO679_SKIN	AP003900.6--AP000345.1	94	3	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	14	0	0.87	1	0.9244	0.0295	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	COLO679_SKIN	0.87	1	0.9539	TRUE	4	17	0	31	0	FALSE	ACH-000805
COLO679_SKIN	TIMM23--RP11-464F9.1	76	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	205	0	0.28	1	0.7474	0.0197	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	COLO679_SKIN	0.28	1	0.7671	TRUE	519	3926	326	965	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	18	197	MT-ND4	1741	chrM:11500:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	2642	0	0.08	1	0.177	1.9373	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.08	1	2.1143	FALSE	344	827	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	13	185	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	38	1	0.84	0.99	0.1278	1.8193	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.84	0.99	1.9471	FALSE	344	826	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	4	193	MT-ND4	1499	chrM:11258:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	258	0	0.43	1	0.0393	1.8979	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.43	1	1.9372	FALSE	344	827	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	5	187	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	27	3	0.88	0.98	0.0492	1.8389	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.88	0.98	1.8881	FALSE	344	826	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	4	188	MT-ND4	1209	chrM:10968:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	37	3	0.84	0.98	0.0393	1.8488	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.84	0.98	1.8881	FALSE	344	826	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	3	187	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	38	0	0.83	1	0.0295	1.8389	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.83	1	1.8684	FALSE	344	826	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	4	182	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	20	1	0.9	0.99	0.0393	1.7898	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.9	0.99	1.8291	FALSE	344	826	44	306	0	FALSE	ACH-000805
COLO679_SKIN	BCL2L13--MLC1	44	18	BCL2L13	4107	chr22:18138598:+	MLC1	22478	chr22:50523390:-	ONLY_REF_SPLICE	YES	272	1	0.19	0.98	0.4327	0.177	BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,MLC1->chr22:50497820-50524331:-,megalencephalic_leukoencephalopathy_with_subcortical_cysts_1	COLO679_SKIN	0.19	0.98	0.6097	TRUE	0	0	0	1	0	TRUE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	10	131	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	14	2	0.91	0.99	0.0983	1.2882	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.91	0.99	1.3865	FALSE	344	821	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	3	134	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	21	1	0.87	0.99	0.0295	1.3177	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.87	0.99	1.3472	FALSE	344	826	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	3	128	MT-ND4	1298	chrM:11057:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	53	1	0.71	0.99	0.0295	1.2587	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.71	0.99	1.2882	FALSE	344	827	44	306	0	FALSE	ACH-000805
COLO679_SKIN	PVT1--MYC	27	12	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	56	115	0.41	0.25	0.2655	0.118	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO679_SKIN	0.25	0.41	0.3835	TRUE	3	14	0	24	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	4	101	MT-ND4	1756	chrM:11515:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	2957	1	0.03	0.99	0.0393	0.9932	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.03	0.99	1.0325	FALSE	344	827	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	3	97	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	33	1	0.75	0.99	0.0295	0.9539	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.75	0.99	0.9834	FALSE	344	826	44	306	0	FALSE	ACH-000805
COLO679_SKIN	AMER1--ARHGEF9	22	14	AMER1	2421	chrX:63413019:-	ARHGEF9	23848	chrX:62898452:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.2163	0.1377	AMER1->APC_membrane_recruitment_protein_1,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:63404997-63425624:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	COLO679_SKIN	0.92	1	0.354	TRUE	0	0	0	1	0	TRUE	ACH-000805
COLO679_SKIN	MT-TA--MT-TC	23	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2262	0.0098	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO679_SKIN	1	1	0.236	FALSE	462	80	0	856	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	11	43	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	33	0	0.62	1	0.1082	0.4229	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.62	1	0.5311	FALSE	344	826	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	15	27	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	33	0	0.56	1	0.1475	0.2655	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.56	1	0.413	FALSE	344	826	44	306	0	FALSE	ACH-000805
COLO679_SKIN	RP11-141M1.3--STARD13	16	8	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	11	33	0.69	0.42	0.1573	0.0787	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	COLO679_SKIN	0.42	0.69	0.236	FALSE	49	120	16	70	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	3	58	MT-ND4	1073	chrM:10832:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	14	1	0.81	0.98	0.0295	0.5704	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.81	0.98	0.5999	FALSE	344	821	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	5	43	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	3515	0	0.01	1	0.0492	0.4229	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.01	1	0.4721	FALSE	344	827	44	306	0	FALSE	ACH-000805
COLO679_SKIN	AP003900.6--AP000345.1	13	5	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	25	0	0.42	1	0.1278	0.0492	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	COLO679_SKIN	0.42	1	0.177	TRUE	0	8	0	37	1	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	7	27	MT-ND4	1452	chrM:11211:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	150	0	0.18	1	0.0688	0.2655	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.18	1	0.3343	FALSE	344	827	44	306	0	FALSE	ACH-000805
COLO679_SKIN	RP11-444D3.1--SOX5	13	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	26	1	0.35	0.1278	0.0098	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	COLO679_SKIN	0.35	1	0.1376	TRUE	477	1352	189	275	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	9	16	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	50	0	0.33	1	0.0885	0.1573	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.33	1	0.2458	FALSE	344	827	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	4	35	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	16	0	0.71	1	0.0393	0.3442	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.71	1	0.3835	FALSE	344	826	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	3	39	MT-ND4	1131	chrM:10890:+	MT-ND4L	5657	chrM:10748:+	INCL_NON_REF_SPLICE	YES	27	0	0.61	1	0.0295	0.3835	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.61	1	0.413	FALSE	344	826	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	6	27	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	37	0	0.47	1	0.059	0.2655	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.47	1	0.3245	FALSE	344	826	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	5	27	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	33	0	0.49	1	0.0492	0.2655	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.49	1	0.3147	FALSE	344	826	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	5	27	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	9	1	0.78	0.97	0.0492	0.2655	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.78	0.97	0.3147	FALSE	344	821	44	306	0	FALSE	ACH-000805
COLO679_SKIN	RP11-141M1.3--STARD13	10	7	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	8	33	0.68	0.34	0.0983	0.0688	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	COLO679_SKIN	0.34	0.68	0.1671	FALSE	141	264	50	91	0	FALSE	ACH-000805
COLO679_SKIN	AMER1--ARHGEF9	9	10	AMER1	1175	chrX:63425450:-	ARHGEF9	23848	chrX:62898452:-	ONLY_REF_SPLICE	YES	9	0	0.68	1	0.0885	0.0983	AMER1->APC_membrane_recruitment_protein_1,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:63404997-63425624:-,ARHGEF9->Cdc42_guanine_nucleotide_exchange_factor_9,chrX:62854847-63005426:-	COLO679_SKIN	0.68	1	0.1868	TRUE	0	0	0	1	0	TRUE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	5	26	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	38	0	0.45	1	0.0492	0.2557	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.45	1	0.3049	FALSE	344	826	44	306	0	FALSE	ACH-000805
COLO679_SKIN	PVT1--MYC	8	12	PVT1	1202	chr8:128806980:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	56	110	0.26	0.15	0.0787	0.118	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	COLO679_SKIN	0.15	0.26	0.1967	TRUE	3	14	0	24	0	FALSE	ACH-000805
COLO679_SKIN	AP000525.9--LA16c-60G3.6	10	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0983	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	COLO679_SKIN	1	1	0.0983	TRUE	0	42	0	133	42	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	3	27	MT-ND4	1114	chrM:10873:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	24	0	0.56	1	0.0295	0.2655	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.56	1	0.295	FALSE	344	826	44	306	0	FALSE	ACH-000805
COLO679_SKIN	RNF115--IQSEC3	9	2	RNF115	2365	chr1:145646173:+	IQSEC3	25409	chr12:208312:+	ONLY_REF_SPLICE	YES	33	0	0.25	1	0.0885	0.0197	RNF115->chr1:145611036-145696218:+,ring_finger_protein_115,IQSEC3->IQ_motif_and_Sec7_domain_3,chr12:175931-287626:+	COLO679_SKIN	0.25	1	0.1082	TRUE	0	0	0	1	0	TRUE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	5	16	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	40	0	0.34	1	0.0492	0.1573	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.34	1	0.2065	FALSE	344	826	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	7	2	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	9	0	0.5	1	0.0688	0.0197	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.5	1	0.0885	FALSE	344	821	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	3	16	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	NO	34	0	0.36	1	0.0295	0.1573	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.36	1	0.1868	FALSE	344	827	44	306	0	FALSE	ACH-000805
COLO679_SKIN	REV3L--RPL28	7	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0688	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	COLO679_SKIN	1	1	0.0688	TRUE	22	156	2	142	0	FALSE	ACH-000805
COLO679_SKIN	RP1-34H18.1--NAV3	6	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.059	0.0197	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	COLO679_SKIN	1	1	0.0787	TRUE	254	575	65	124	0	FALSE	ACH-000805
COLO679_SKIN	RP11-123O10.4--GRIP1	6	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.059	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO679_SKIN	1	1	0.059	FALSE	416	2512	207	587	0	FALSE	ACH-000805
COLO679_SKIN	RP11-96H19.1--RP11-446N19.1	5	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0492	0.0295	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO679_SKIN	0.89	1	0.0787	FALSE	515	4851	409	746	0	FALSE	ACH-000805
COLO679_SKIN	HUWE1--MT-ND2	5	0	HUWE1	69942	chrX:53565916:-	MT-ND2	80561	chrM:5229:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0492	0	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	COLO679_SKIN	1	1	0.0492	FALSE	0	0	0	1	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	4	4	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	9	0	0.47	1	0.0393	0.0393	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.47	1	0.0786	FALSE	344	821	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MT-TA--MT-TC	4	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0.0098	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO679_SKIN	1	1	0.0491	FALSE	462	80	0	856	0	FALSE	ACH-000805
COLO679_SKIN	NRIP1--AF127936.7	4	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.31	1	0.0393	0.0098	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO679_SKIN	0.31	1	0.0491	FALSE	125	705	46	456	0	FALSE	ACH-000805
COLO679_SKIN	MT-ATP8--MT-ND1	4	0	MT-ATP8	1068	chrM:8433:+	MT-ND1	4696	chrM:3795:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	LOCAL_REARRANGEMENT:+:[4104],MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	COLO679_SKIN	1	1	0.0393	FALSE	2	1	0	2	0	FALSE	ACH-000805
COLO679_SKIN	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO679_SKIN	1	1	0.0393	FALSE	462	80	0	856	0	FALSE	ACH-000805
COLO679_SKIN	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0393	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO679_SKIN	1	1	0.0393	FALSE	292	1546	117	613	0	FALSE	ACH-000805
COLO679_SKIN	NUDT1--HACE1	4	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0393	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	COLO679_SKIN	1	1	0.0393	TRUE	1	20	0	20	17	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	3	3	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	9	0	0.4	1	0.0295	0.0295	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.4	1	0.059	FALSE	344	821	44	306	0	FALSE	ACH-000805
COLO679_SKIN	NRIP1--AF127936.7	3	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.24	1	0.0295	0.0197	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO679_SKIN	0.24	1	0.0492	FALSE	164	806	69	479	0	FALSE	ACH-000805
COLO679_SKIN	MT-ND4--MT-ND4L	3	1	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	1	1	0.8	0.8	0.0295	0.0098	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO679_SKIN	0.8	0.8	0.0393	FALSE	344	821	44	306	0	FALSE	ACH-000805
COLO679_SKIN	MMP17--NOC4L	3	0	MMP17	1261	chr12:132313198:+	NOC4L	19756	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	GTEx_FI:{Brain=[count:15=pct:2.3]},MMP17->chr12:132312938-132336328:+,matrix_metallopeptidase_17,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	COLO679_SKIN	1	1	0.0295	TRUE	7	45	0	7	0	FALSE	ACH-000805
COLO679_SKIN	RCC1--GNB1	3	0	RCC1	2175	chr1:28834672:+	GNB1	21015	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	COLO679_SKIN	1	1	0.0295	TRUE	0	10	0	7	3	TRUE	ACH-000805
COLO679_SKIN	AP003900.6--AP000345.1	2	3	AP003900.6	2187	chr21:11172043:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	35	0	0.12	1	0.0197	0.0295	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	COLO679_SKIN	0.12	1	0.0492	TRUE	1	2	0	16	0	FALSE	ACH-000805
COLO679_SKIN	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0.0295	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO679_SKIN	1	1	0.0492	FALSE	407	2205	196	549	0	FALSE	ACH-000805
COLO679_SKIN	RP11-141M1.3--STARD13	2	2	RP11-141M1.3	11074	chr13:33933602:-	STARD13	26750	chr13:33716510:-	ONLY_REF_SPLICE	YES	11	47	0.27	0.08	0.0197	0.0197	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	COLO679_SKIN	0.08	0.27	0.0394	FALSE	0	1	0	6	0	FALSE	ACH-000805
COLO679_SKIN	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	26	1	0.1	0.0197	0.0098	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	COLO679_SKIN	0.1	1	0.0295	TRUE	274	363	69	150	0	FALSE	ACH-000805
COLO679_SKIN	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	1	1	0.83	0.0098	0.0393	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO679_SKIN	0.83	1	0.0491	FALSE	467	2173	244	435	0	FALSE	ACH-000805
COLO679_SKIN	SMYD3--DESI2	2	0	SMYD3	22361	chr1:246091233:-	DESI2	39952	chr1:244868858:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,DESI2->chr1:244816237-244872335:+,desumoylating_isopeptidase_2	COLO679_SKIN	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000805
COLO679_SKIN	BICD1--DNM1L	1	1	BICD1	1710	chr12:32260478:+	DNM1L	27204	chr12:32854349:+	ONLY_REF_SPLICE	NO	78	123	0.03	0.02	0.0098	0.0098	BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,DNM1L->chr12:32832134-32898486:+,dynamin_1-like	COLO679_SKIN	0.02	0.03	0.0196	TRUE	0	0	0	1	0	FALSE	ACH-000805
COLO679_SKIN	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	16	4	0.11	0.33	0.0098	0.0098	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO679_SKIN	0.11	0.33	0.0196	FALSE	8	57	1	47	0	FALSE	ACH-000805
COLO679_SKIN	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	622	1	0	0.0098	0.0098	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	COLO679_SKIN	0	1	0.0196	FALSE	0	59	0	125	0	FALSE	ACH-000805
COLO679_SKIN	ZFAS1--RBM38	1	1	ZFAS1	2031	chr20:47895745:+	RBM38	12550	chr20:55982599:+	ONLY_REF_SPLICE	NO	728	84	0	0.02	0.0098	0.0098	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,RBM38->RNA_binding_motif_protein_38,chr20:55966463-55984389:+	COLO679_SKIN	0	0.02	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000805
SNU620_STOMACH	TFEB--TRERF1	5706	1638	TFEB	1910	chr6:41703088:-	TRERF1	37909	chr6:42196407:-	ONLY_REF_SPLICE	YES	35	5	1	1	48.971	14.0579	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	SNU620_STOMACH	1	1	63.0289	TRUE	0	0	0	2	0	TRUE	ACH-000325
SNU620_STOMACH	TFEB--TRERF1	2948	77	TFEB	1114	chr6:41703884:-	TRERF1	37909	chr6:42196407:-	ONLY_REF_SPLICE	YES	0	5	1	1	25.3008	0.6608	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	SNU620_STOMACH	1	1	25.9616	TRUE	0	0	0	2	0	TRUE	ACH-000325
SNU620_STOMACH	TFEB--TRERF1	1754	2075	TFEB	4611	chr6:41700387:-	TRERF1	37909	chr6:42196407:-	ONLY_REF_SPLICE	YES	39	5	0.99	1	15.0535	17.8084	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	SNU620_STOMACH	0.99	1	32.8619	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	1364	430	ST7	1454	chr7:116593745:+	ATP6V0A4	43207	chr7:138456009:-	ONLY_REF_SPLICE	YES	44	49	0.98	0.97	11.7063	3.6904	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.97	0.98	15.3967	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--MRPS10	1187	81	RP11-1143G9.4	1489	chr12:69747517:-	MRPS10	10748	chr6:42175206:-	INCL_NON_REF_SPLICE	YES	7598	1733	0.14	0.42	10.1873	0.6952	RP11-1143G9.4->chr12:69747273-69748005:-,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	SNU620_STOMACH	0.14	0.42	10.8825	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	FOXN3--LYZ	1117	1	FOXN3	14521	chr14:89730338:-	LYZ	38331	chr12:69747351:+	INCL_NON_REF_SPLICE	YES	49	15164	0.96	0.07	9.5865	0.0086	FOXN3->chr14:89591215-90085493:-,forkhead_box_N3,LYZ->chr12:69742121-69748014:+,lysozyme	SNU620_STOMACH	0.07	0.96	9.5951	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--RAB11FIP1	588	3	RP11-1143G9.4	1649	chr12:69747357:-	RAB11FIP1	16524	chr8:37717947:-	INCL_NON_REF_SPLICE	YES	26	228	0.96	0.72	5.0464	0.0257	RP11-1143G9.4->chr12:69747273-69748005:-,RAB11FIP1->RAB11_family_interacting_protein_1,chr8:37716136-37756985:-	SNU620_STOMACH	0.72	0.96	5.0721	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	TFEB--TRERF1	60	1665	TFEB	2360	chr6:41702638:-	TRERF1	37909	chr6:42196407:-	ONLY_REF_SPLICE	YES	58	5	0.97	1	0.5149	14.2896	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	SNU620_STOMACH	0.97	1	14.8045	TRUE	0	0	0	2	0	TRUE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	300	503	ST7	1454	chr7:116593745:+	ATP6V0A4	40872	chr7:138471005:-	ONLY_REF_SPLICE	YES	44	34	0.95	0.96	2.5747	4.3169	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.95	0.96	6.8916	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	TFEB--TRERF1	5	1669	TFEB	3596	chr6:41701402:-	TRERF1	37909	chr6:42196407:-	ONLY_REF_SPLICE	YES	521	5	0.76	1	0.0429	14.324	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	SNU620_STOMACH	0.76	1	14.3669	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	TFEB--TRERF1	1	1666	TFEB	3175	chr6:41701823:-	TRERF1	37909	chr6:42196407:-	ONLY_REF_SPLICE	YES	138	5	0.92	1	0.0086	14.2982	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	SNU620_STOMACH	0.92	1	14.3068	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	TFEB--TRERF1	3	1638	TFEB	1910	chr6:41703088:-	TRERF1	37911	chr6:42196405:-	INCL_NON_REF_SPLICE	YES	35	4	0.98	1	0.0257	14.0579	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	SNU620_STOMACH	0.98	1	14.0836	TRUE	0	0	0	2	0	TRUE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--RAB11FIP1	144	3	RP11-1143G9.4	1505	chr12:69747501:-	RAB11FIP1	16380	chr8:37718091:-	INCL_NON_REF_SPLICE	YES	7854	214	0.02	0.41	1.2359	0.0257	RP11-1143G9.4->chr12:69747273-69748005:-,RAB11FIP1->RAB11_family_interacting_protein_1,chr8:37716136-37756985:-	SNU620_STOMACH	0.02	0.41	1.2616	TRUE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	TIMM23B--LINC00843	135	36	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1586	0.309	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU620_STOMACH	1	1	1.4676	TRUE	508	994	45	981	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--RAB11FIP1	140	12	RP11-1143G9.4	1505	chr12:69747501:-	RAB11FIP1	15134	chr8:37719337:-	INCL_NON_REF_SPLICE	YES	7854	263	0.02	0.37	1.2015	0.103	RP11-1143G9.4->chr12:69747273-69748005:-,RAB11FIP1->RAB11_family_interacting_protein_1,chr8:37716136-37756985:-	SNU620_STOMACH	0.02	0.37	1.3045	TRUE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	17	487	ST7	1454	chr7:116593745:+	ATP6V0A4	40884	chr7:138470993:-	INCL_NON_REF_SPLICE	YES	44	37	0.92	0.93	0.1459	4.1796	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.92	0.93	4.3255	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	3	508	ST7	2442	chr7:116594733:+	ATP6V0A4	40872	chr7:138471005:-	ONLY_REF_SPLICE	YES	34	34	0.94	0.94	0.0257	4.3598	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.94	0.94	4.3855	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	2	510	ST7	5015	chr7:116660683:+	ATP6V0A4	40872	chr7:138471005:-	ONLY_REF_SPLICE	YES	34	34	0.94	0.94	0.0172	4.377	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.94	0.94	4.3942	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	2	509	ST7	3569	chr7:116655068:+	ATP6V0A4	40872	chr7:138471005:-	ONLY_REF_SPLICE	YES	34	34	0.94	0.94	0.0172	4.3684	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.94	0.94	4.3856	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	3	433	ST7	3569	chr7:116655068:+	ATP6V0A4	43207	chr7:138456009:-	ONLY_REF_SPLICE	YES	34	49	0.93	0.9	0.0257	3.7162	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.9	0.93	3.7419	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	1	434	ST7	5015	chr7:116660683:+	ATP6V0A4	43207	chr7:138456009:-	ONLY_REF_SPLICE	NO	34	49	0.93	0.9	0.0086	3.7247	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.9	0.93	3.7333	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	AC006159.3--USP49	97	13	AC006159.3	2366	chr7:116240845:-	USP49	15868	chr6:41839375:-	ONLY_REF_SPLICE	YES	3	31	0.97	0.78	0.8325	0.1116	AC006159.3->chr7:116211014-116254874:-,USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49	SNU620_STOMACH	0.78	0.97	0.9441	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	AC092594.1--SVOPL	74	9	AC092594.1	11499	chr2:19203592:-	SVOPL	36587	chr7:138281275:-	ONLY_REF_SPLICE	YES	0	26	1	0.76	0.6351	0.0772	AC092594.1->chr2:19167729-19546509:-,SVOPL->SVOP_like,chr7:138279030-138386097:-	SNU620_STOMACH	0.76	1	0.7123	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	TIMM23--RP11-464F9.1	67	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	137	1	0.33	0.99	0.575	0.0086	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU620_STOMACH	0.33	0.99	0.5836	TRUE	519	3926	326	965	0	FALSE	ACH-000325
SNU620_STOMACH	AC006159.3--USP49	63	2	AC006159.3	1222	chr7:116254653:-	USP49	15868	chr6:41839375:-	ONLY_REF_SPLICE	YES	4	31	0.94	0.68	0.5407	0.0172	AC006159.3->chr7:116211014-116254874:-,USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49	SNU620_STOMACH	0.68	0.94	0.5579	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	MT-TA--MT-TC	61	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5235	0.0687	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU620_STOMACH	1	1	0.5922	FALSE	462	80	0	856	0	FALSE	ACH-000325
SNU620_STOMACH	TMEM213--ST7-AS1	50	19	TMEM213	6862	chr7:138490784:+	ST7-AS1	12459	chr7:116593745:-	INCL_NON_REF_SPLICE	YES	5	2	0.93	0.97	0.4291	0.1631	TMEM213->chr7:138482695-138522846:+,transmembrane_protein_213,ST7-AS1->ST7_antisense_RNA_1,chr7:116592500-116594388:-	SNU620_STOMACH	0.93	0.97	0.5922	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	MT-ND4--MT-ND4L	18	143	MT-ND4	1852	chrM:11611:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	7151	0	0.02	1	0.1545	1.2273	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU620_STOMACH	0.02	1	1.3818	FALSE	344	827	44	306	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--MRPS10	31	83	RP11-1143G9.4	1493	chr12:69747513:-	MRPS10	10752	chr6:42175202:-	INCL_NON_REF_SPLICE	YES	7854	1709	0.01	0.06	0.2661	0.7123	RP11-1143G9.4->chr12:69747273-69748005:-,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	SNU620_STOMACH	0.01	0.06	0.9784	TRUE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--MRPS10	30	87	RP11-1143G9.4	1505	chr12:69747501:-	MRPS10	10764	chr6:42175190:-	INCL_NON_REF_SPLICE	YES	8260	1698	0.01	0.06	0.2575	0.7467	RP11-1143G9.4->chr12:69747273-69748005:-,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	SNU620_STOMACH	0.01	0.06	1.0042	TRUE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	OR51S1--TP53I11	51	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4377	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU620_STOMACH	1	1	0.4377	TRUE	402	216	10	229	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--MRPS10	40	30	RP11-1143G9.4	1655	chr12:69747351:-	MRPS10	10915	chr6:42175039:-	INCL_NON_REF_SPLICE	YES	16	1267	0.81	0.05	0.3433	0.2575	RP11-1143G9.4->chr12:69747273-69748005:-,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	SNU620_STOMACH	0.05	0.81	0.6008	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ZNF236--PIEZO2	38	6	ZNF236	1056	chr18:74534618:+	PIEZO2	45232	chr18:10979658:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3261	0.0515	ZNF236->chr18:74534563-74682683:+,zinc_finger_protein_236,PIEZO2->chr18:10666480-11148587:-,piezo_type_mechanosensitive_ion_channel_component_2	SNU620_STOMACH	1	1	0.3776	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	MT-ND4--MT-ND4L	4	139	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	6	2	0.96	0.99	0.0343	1.1929	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU620_STOMACH	0.96	0.99	1.2272	FALSE	344	826	44	306	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ND4--MT-ND4L	3	139	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	6	1	0.96	0.99	0.0257	1.1929	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU620_STOMACH	0.96	0.99	1.2186	FALSE	344	826	44	306	0	FALSE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	4	129	ST7	1454	chr7:116593745:+	ATP6V0A4	44341	chr7:138453996:-	ONLY_REF_SPLICE	YES	44	314	0.75	0.3	0.0343	1.1071	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.3	0.75	1.1414	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	MT-ND4--MT-ND4L	12	92	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	4179	0	0.02	1	0.103	0.7896	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU620_STOMACH	0.02	1	0.8926	FALSE	344	827	44	306	0	FALSE	ACH-000325
SNU620_STOMACH	ZNF654--HMGB2	35	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3004	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU620_STOMACH	1	1	0.3004	TRUE	0	0	0	518	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ND4--MT-ND4L	8	106	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1	2	0.99	0.98	0.0687	0.9097	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU620_STOMACH	0.98	0.99	0.9784	FALSE	344	821	44	306	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ND4--MT-ND4L	28	19	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	517	0	0.08	1	0.2403	0.1631	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU620_STOMACH	0.08	1	0.4034	FALSE	344	827	44	306	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--RAB11FIP1	31	4	RP11-1143G9.4	1489	chr12:69747517:-	RAB11FIP1	16358	chr8:37718113:-	INCL_NON_REF_SPLICE	YES	7220	208	0	0.14	0.2661	0.0343	RP11-1143G9.4->chr12:69747273-69748005:-,RAB11FIP1->RAB11_family_interacting_protein_1,chr8:37716136-37756985:-	SNU620_STOMACH	0	0.14	0.3004	TRUE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--RAB11FIP1	26	20	RP11-1143G9.4	1655	chr12:69747351:-	RAB11FIP1	6447	chr8:37735319:-	INCL_NON_REF_SPLICE	YES	17	305	0.73	0.13	0.2231	0.1716	RP11-1143G9.4->chr12:69747273-69748005:-,RAB11FIP1->RAB11_family_interacting_protein_1,chr8:37716136-37756985:-	SNU620_STOMACH	0.13	0.73	0.3947	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	MET--LYZ	30	3	MET	25660	chr7:116436771:+	LYZ	34284	chr12:69747351:+	INCL_NON_REF_SPLICE	YES	2261	15163	0.01	0	0.2575	0.0257	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,LYZ->chr12:69742121-69748014:+,lysozyme	SNU620_STOMACH	0	0.01	0.2832	TRUE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ATP6--MT-CO1	24	0	MT-ATP6	1018	chrM:8544:+	MT-CO1	5856	chrM:7078:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.206	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU620_STOMACH	1	1	0.206	FALSE	183	104	9	328	0	FALSE	ACH-000325
SNU620_STOMACH	MET--LYZ	21	3	MET	25810	chr7:116436921:+	LYZ	34450	chr12:69747517:+	INCL_NON_REF_SPLICE	YES	2501	16877	0.01	0	0.1802	0.0257	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,LYZ->chr12:69742121-69748014:+,lysozyme	SNU620_STOMACH	0	0.01	0.2059	TRUE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	PGC--MT-CO3	19	10	PGC	6344	chr6:41709534:-	MT-CO3	13518	chrM:9265:+	INCL_NON_REF_SPLICE	NO	15900	0	0	1	0.1631	0.0858	PGC->chr6:41704449-41721847:-,progastricsin_(pepsinogen_C),MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU620_STOMACH	0	1	0.2489	FALSE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	PNCK--LINC01004	18	9	PNCK	3491	chrX:152951956:-	LINC01004	15759	chr7:104594353:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.1545	0.0772	PNCK->chrX:152935185-152954465:-,pregnancy_up-regulated_nonubiquitous_CaM_kinase,LINC01004->chr7:104590762-104653491:-,long_intergenic_non-protein_coding_RNA_1004	SNU620_STOMACH	0.96	1	0.2317	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ARMC10--OSR1	20	0	ARMC10	12353	chr7:102740016:+	OSR1	19766	chr2:19554191:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1716	0	GTEx_FI:{Blood_Vessel=[count:3=pct:0.8],Brain=[count:3=pct:0.5],Thyroid=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Esophagus=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Ovary=[count:1=pct:1.9]},ARMC10->armadillo_repeat_containing_10,chr7:102715328-102740205:+,OSR1->chr2:19551246-19558414:-,odd-skipped_related_transciption_factor_1	SNU620_STOMACH	1	1	0.1716	TRUE	15	4	0	8	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ND4--MT-ND4L	4	48	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0343	0.412	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU620_STOMACH	0.98	1	0.4463	FALSE	344	821	44	306	0	FALSE	ACH-000325
SNU620_STOMACH	AC092594.1--SVOPL	13	10	AC092594.1	11499	chr2:19203592:-	SVOPL	35868	chr7:138281994:-	ONLY_REF_SPLICE	YES	0	20	1	0.53	0.1116	0.0858	AC092594.1->chr2:19167729-19546509:-,SVOPL->SVOP_like,chr7:138279030-138386097:-	SNU620_STOMACH	0.53	1	0.1974	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	NPM1P24--SET	15	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	25	1355	0.39	0.01	0.1287	0.0086	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU620_STOMACH	0.01	0.39	0.1373	TRUE	0	0	0	434	0	FALSE	ACH-000325
SNU620_STOMACH	MT-CO3--MT-ATP6	6	36	MT-CO3	1322	chrM:9528:+	MT-ATP6	5065	chrM:8807:+	INCL_NON_REF_SPLICE	NO	4	88	0.91	0.32	0.0515	0.309	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU620_STOMACH	0.32	0.91	0.3605	FALSE	189	492	56	216	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--MRPS10	6	34	RP11-1143G9.4	1418	chr12:69747588:-	MRPS10	10676	chr6:42175278:-	INCL_NON_REF_SPLICE	YES	9205	1927	0	0.02	0.0515	0.2918	RP11-1143G9.4->chr12:69747273-69748005:-,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	SNU620_STOMACH	0	0.02	0.3433	TRUE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	MT-CO3--MT-ATP6	6	33	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	8	11	0.83	0.78	0.0515	0.2832	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU620_STOMACH	0.78	0.83	0.3347	FALSE	189	492	56	216	0	FALSE	ACH-000325
SNU620_STOMACH	MT-CO3--MT-ATP6	14	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1202	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU620_STOMACH	1	1	0.1202	FALSE	189	492	56	216	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-96H19.1--RP11-446N19.1	13	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	1	0.85	0.94	0.1116	0.0343	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU620_STOMACH	0.85	0.94	0.1459	FALSE	515	4851	409	746	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ND6--MT-TE	13	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1116	0.0257	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU620_STOMACH	0.94	1	0.1373	FALSE	499	1288	110	792	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--MRPS10	4	39	RP11-1143G9.4	1420	chr12:69747586:-	MRPS10	10658	chr6:42175296:-	INCL_NON_REF_SPLICE	YES	8984	2128	0	0.02	0.0343	0.3347	RP11-1143G9.4->chr12:69747273-69748005:-,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	SNU620_STOMACH	0	0.02	0.369	TRUE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ND6--MT-TE	13	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1116	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU620_STOMACH	1	1	0.1116	FALSE	499	1288	110	792	0	FALSE	ACH-000325
SNU620_STOMACH	MT-TA--MT-TC	11	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0944	0.0515	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU620_STOMACH	1	1	0.1459	FALSE	462	80	0	856	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--RAB11FIP1	10	9	RP11-1143G9.4	1489	chr12:69747517:-	RAB11FIP1	15116	chr8:37719355:-	INCL_NON_REF_SPLICE	YES	7220	235	0	0.07	0.0858	0.0772	RP11-1143G9.4->chr12:69747273-69748005:-,RAB11FIP1->RAB11_family_interacting_protein_1,chr8:37716136-37756985:-	SNU620_STOMACH	0	0.07	0.163	TRUE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	HSPBP1--GRK5	12	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.103	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU620_STOMACH	1	1	0.103	TRUE	1	39	0	134	39	FALSE	ACH-000325
SNU620_STOMACH	SDC1--PGC	11	3	SDC1	5715	chr2:20403651:-	PGC	20216	chr6:41705500:-	INCL_NON_REF_SPLICE	YES	6422	11466	0	0	0.0944	0.0257	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,PGC->chr6:41704449-41721847:-,progastricsin_(pepsinogen_C)	SNU620_STOMACH	0	0	0.1201	TRUE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	MT-CO3--MT-ATP6	3	33	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	5	54	0.88	0.4	0.0257	0.2832	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU620_STOMACH	0.4	0.88	0.3089	FALSE	189	492	56	216	0	FALSE	ACH-000325
SNU620_STOMACH	MT-CO3--MT-ATP6	3	33	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	3	44	0.92	0.45	0.0257	0.2832	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU620_STOMACH	0.45	0.92	0.3089	FALSE	189	492	56	216	0	FALSE	ACH-000325
SNU620_STOMACH	MT-CO3--MT-ATP6	3	31	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	71	0.97	0.32	0.0257	0.2661	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU620_STOMACH	0.32	0.97	0.2918	FALSE	189	492	56	216	0	FALSE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	3	31	ST7	1454	chr7:116593745:+	ATP6V0A4	45813	chr7:138447770:-	ONLY_REF_SPLICE	YES	44	594	0.44	0.05	0.0257	0.2661	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.05	0.44	0.2918	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	NRIP1--AF127936.7	10	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0858	0.0172	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU620_STOMACH	0.92	1	0.103	FALSE	292	1546	117	613	0	FALSE	ACH-000325
SNU620_STOMACH	PLXDC1--TAF13	10	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0858	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SNU620_STOMACH	1	1	0.0858	TRUE	7	10	0	216	0	FALSE	ACH-000325
SNU620_STOMACH	MET--LYZ	9	3	MET	25839	chr7:116436950:+	LYZ	34479	chr12:69747546:+	INCL_NON_REF_SPLICE	YES	2372	16216	0.01	0	0.0772	0.0257	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,LYZ->chr12:69742121-69748014:+,lysozyme	SNU620_STOMACH	0	0.01	0.1029	TRUE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-114H23.1--RP11-114H23.2	9	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0772	0.0257	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU620_STOMACH	1	1	0.1029	FALSE	81	155	12	160	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ND4--MT-ND4L	3	26	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8	0	0.78	1	0.0257	0.2231	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU620_STOMACH	0.78	1	0.2488	FALSE	344	826	44	306	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ND6--MT-TE	9	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0772	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU620_STOMACH	1	1	0.0772	FALSE	499	1288	110	792	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ND6--MT-TE	8	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0687	0.0257	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU620_STOMACH	1	1	0.0944	FALSE	499	1288	110	792	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ND4--MT-ND4L	4	18	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12	0	0.65	1	0.0343	0.1545	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU620_STOMACH	0.65	1	0.1888	FALSE	344	826	44	306	0	FALSE	ACH-000325
SNU620_STOMACH	MT-CO3--MT-ATP6	6	9	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0515	0.0772	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU620_STOMACH	0.94	1	0.1287	FALSE	189	492	56	216	0	FALSE	ACH-000325
SNU620_STOMACH	PBX3--GLE1	8	0	PBX3	11138	chr9:128697886:+	GLE1	23342	chr9:131277808:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0687	0	{Klijn_CCL:Stomach=1},PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	SNU620_STOMACH	1	1	0.0687	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	PGC--MT-CO3	6	8	PGC	5810	chr6:41710068:-	MT-CO3	13518	chrM:9265:+	INCL_NON_REF_SPLICE	YES	14369	0	0	1	0.0515	0.0687	PGC->chr6:41704449-41721847:-,progastricsin_(pepsinogen_C),MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU620_STOMACH	0	1	0.1202	FALSE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	NRIP1--AF127936.7	7	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.38	1	0.0601	0.0257	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU620_STOMACH	0.38	1	0.0858	FALSE	125	705	46	456	0	FALSE	ACH-000325
SNU620_STOMACH	PGC--MT-CO3	6	5	PGC	5786	chr6:41710092:-	MT-CO3	13675	chrM:9422:+	INCL_NON_REF_SPLICE	YES	14837	12206	0	0	0.0515	0.0429	PGC->chr6:41704449-41721847:-,progastricsin_(pepsinogen_C),MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU620_STOMACH	0	0	0.0944	FALSE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	PNCK--LINC01004	5	9	PNCK	3528	chrX:152951919:-	LINC01004	15759	chr7:104594353:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0429	0.0772	PNCK->chrX:152935185-152954465:-,pregnancy_up-regulated_nonubiquitous_CaM_kinase,LINC01004->chr7:104590762-104653491:-,long_intergenic_non-protein_coding_RNA_1004	SNU620_STOMACH	0.93	1	0.1201	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0601	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU620_STOMACH	1	1	0.0601	FALSE	462	80	0	856	0	FALSE	ACH-000325
SNU620_STOMACH	FOXN3--LYZ	6	2	FOXN3	14729	chr14:89730130:-	LYZ	38398	chr12:69747418:+	INCL_NON_REF_SPLICE	YES	46	16725	0.15	0	0.0515	0.0172	FOXN3->chr14:89591215-90085493:-,forkhead_box_N3,LYZ->chr12:69742121-69748014:+,lysozyme	SNU620_STOMACH	0	0.15	0.0687	FALSE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--RAB11FIP1	3	14	RP11-1143G9.4	1649	chr12:69747357:-	RAB11FIP1	15277	chr8:37719194:-	INCL_NON_REF_SPLICE	YES	26	210	0.4	0.07	0.0257	0.1202	RP11-1143G9.4->chr12:69747273-69748005:-,RAB11FIP1->RAB11_family_interacting_protein_1,chr8:37716136-37756985:-	SNU620_STOMACH	0.07	0.4	0.1459	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	RP11-96H19.1--RP11-446N19.1	5	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.0429	0.0515	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU620_STOMACH	0.79	1	0.0944	FALSE	407	2205	196	549	0	FALSE	ACH-000325
SNU620_STOMACH	SDC1--LCN2	6	2	SDC1	5614	chr2:20403752:-	LCN2	12200	chr9:130911741:+	INCL_NON_REF_SPLICE	YES	6489	4	0	0.67	0.0515	0.0172	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,LCN2->chr9:130911350-130915734:+,lipocalin_2	SNU620_STOMACH	0	0.67	0.0687	FALSE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2070	0	0	1	0.0515	0.0086	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU620_STOMACH	0	1	0.0601	FALSE	13	9	0	364	0	FALSE	ACH-000325
SNU620_STOMACH	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2091	0	0	1	0.0515	0.0086	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU620_STOMACH	0	1	0.0601	FALSE	13	9	0	364	0	FALSE	ACH-000325
SNU620_STOMACH	NPM1P24--SET	6	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	25	1203	0.22	0.01	0.0515	0.0086	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU620_STOMACH	0.01	0.22	0.0601	FALSE	0	0	0	434	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--MRPS10	4	9	RP11-1143G9.4	1489	chr12:69747517:-	MRPS10	10881	chr6:42175073:-	INCL_NON_REF_SPLICE	YES	7598	1098	0	0.01	0.0343	0.0772	RP11-1143G9.4->chr12:69747273-69748005:-,MRPS10->chr6:42174539-42185603:-,mitochondrial_ribosomal_protein_S10	SNU620_STOMACH	0	0.01	0.1115	TRUE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ND6--MT-TE	5	3	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0429	0.0257	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU620_STOMACH	0.89	1	0.0686	FALSE	499	1288	110	792	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--RPL13A	5	3	RP11-1143G9.4	1450	chr12:69747556:-	RPL13A	7419	chr19:49994701:+	INCL_NON_REF_SPLICE	YES	7691	4631	0	0	0.0429	0.0257	RP11-1143G9.4->chr12:69747273-69748005:-,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	SNU620_STOMACH	0	0	0.0686	FALSE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	JUP--MT-CO3	5	2	JUP	8242	chr17:39923795:-	MT-CO3	24128	chrM:9574:+	INCL_NON_REF_SPLICE	YES	483	14986	0.01	0	0.0429	0.0172	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU620_STOMACH	0	0.01	0.0601	FALSE	0	0	0	33	0	FALSE	ACH-000325
SNU620_STOMACH	MET--LYZ	3	9	MET	25849	chr7:116436960:+	LYZ	34343	chr12:69747410:+	INCL_NON_REF_SPLICE	YES	2230	16576	0.01	0	0.0257	0.0772	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,LYZ->chr12:69742121-69748014:+,lysozyme	SNU620_STOMACH	0	0.01	0.1029	TRUE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	NPM1P24--SET	5	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	25	1199	0.19	0	0.0429	0.0086	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU620_STOMACH	0	0.19	0.0515	FALSE	0	0	0	434	0	FALSE	ACH-000325
SNU620_STOMACH	PGC--MT-CO3	3	9	PGC	5820	chr6:41710058:-	MT-CO3	13527	chrM:9274:+	INCL_NON_REF_SPLICE	YES	13773	0	0	1	0.0257	0.0772	PGC->chr6:41704449-41721847:-,progastricsin_(pepsinogen_C),MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU620_STOMACH	0	1	0.1029	FALSE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	PGC--RPL13A	4	5	PGC	7540	chr6:41708338:-	RPL13A	14657	chr19:49993213:+	INCL_NON_REF_SPLICE	NO	14056	1223	0	0.01	0.0343	0.0429	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.19%,PGC->chr6:41704449-41721847:-,progastricsin_(pepsinogen_C),RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	SNU620_STOMACH	0	0.01	0.0772	FALSE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ATP6--MT-CO1	5	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU620_STOMACH	1	1	0.0429	FALSE	183	104	9	328	0	FALSE	ACH-000325
SNU620_STOMACH	NRIP1--AF127936.7	4	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.32	1	0.0343	0.0343	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU620_STOMACH	0.32	1	0.0686	FALSE	164	806	69	479	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-120D5.1--MID1	5	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0429	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU620_STOMACH	1	1	0.0429	FALSE	16	356	14	466	0	FALSE	ACH-000325
SNU620_STOMACH	SWI5--OXR1	4	4	SWI5	5642	chr9:131048312:+	OXR1	32591	chr8:107749748:+	ONLY_REF_SPLICE	YES	186	96	0.04	0.08	0.0343	0.0343	SWI5->SWI5_homologous_recombination_repair_protein,chr9:131037658-131051269:+,OXR1->chr8:107282473-107764922:+,oxidation_resistance_1	SNU620_STOMACH	0.04	0.08	0.0686	TRUE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	AC006159.3--USP49	4	2	AC006159.3	1222	chr7:116254653:-	USP49	16942	chr6:41774749:-	ONLY_REF_SPLICE	YES	4	35	0.6	0.15	0.0343	0.0172	AC006159.3->chr7:116211014-116254874:-,USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49	SNU620_STOMACH	0.15	0.6	0.0515	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	MET--LYZ	4	2	MET	25299	chr7:116436410:+	LYZ	31573	chr12:69743927:+	INCL_NON_REF_SPLICE	NO	2232	11831	0	0	0.0343	0.0172	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,LYZ->chr12:69742121-69748014:+,lysozyme	SNU620_STOMACH	0	0	0.0515	FALSE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	AC006159.3--USP49	1	13	AC006159.3	2366	chr7:116240845:-	USP49	13336	chr6:41841977:-	ONLY_REF_SPLICE	YES	3	33	0.82	0.3	0.0086	0.1116	AC006159.3->chr7:116211014-116254874:-,USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49	SNU620_STOMACH	0.3	0.82	0.1202	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	GLE1--SCAI	4	1	GLE1	3538	chr9:131277918:+	SCAI	20321	chr9:127904956:-	ONLY_REF_SPLICE	YES	107	13	0.04	0.28	0.0343	0.0086	GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+,SCAI->chr9:127704887-127905785:-,suppressor_of_cancer_cell_invasion	SNU620_STOMACH	0.04	0.28	0.0429	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	PGC--RPL13A	4	1	PGC	4825	chr6:41711053:-	RPL13A	16174	chr19:49994730:+	INCL_NON_REF_SPLICE	YES	16584	4464	0	0	0.0343	0.0086	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.19%,PGC->chr6:41704449-41721847:-,progastricsin_(pepsinogen_C),RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	SNU620_STOMACH	0	0	0.0429	FALSE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	APC--CTC-254B4.1	3	4	APC	1385	chr5:112043579:+	CTC-254B4.1	38572	chr5:106154178:-	ONLY_REF_SPLICE	YES	0	2	1	0.78	0.0257	0.0343	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,CTC-254B4.1->chr5:106150898-106346715:-	SNU620_STOMACH	0.78	1	0.06	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	APC--CTC-254B4.1	3	4	APC	1385	chr5:112043579:+	CTC-254B4.1	39651	chr5:106151247:-	ONLY_REF_SPLICE	YES	0	2	1	0.78	0.0257	0.0343	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,CTC-254B4.1->chr5:106150898-106346715:-	SNU620_STOMACH	0.78	1	0.06	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ARMC10--OSR1	4	0	ARMC10	12349	chr7:102740012:+	OSR1	19762	chr2:19554195:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	GTEx_FI:{Blood_Vessel=[count:3=pct:0.8],Brain=[count:3=pct:0.5],Thyroid=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Esophagus=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Ovary=[count:1=pct:1.9]},ARMC10->armadillo_repeat_containing_10,chr7:102715328-102740205:+,OSR1->chr2:19551246-19558414:-,odd-skipped_related_transciption_factor_1	SNU620_STOMACH	1	1	0.0343	TRUE	15	4	0	8	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU620_STOMACH	1	1	0.0343	FALSE	183	104	9	328	0	FALSE	ACH-000325
SNU620_STOMACH	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0343	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU620_STOMACH	1	1	0.0343	TRUE	0	0	0	434	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--RPL13A	3	4	RP11-1143G9.4	1649	chr12:69747357:-	RPL13A	6215	chr19:49993497:+	INCL_NON_REF_SPLICE	YES	26	1099	0.21	0.01	0.0257	0.0343	RP11-1143G9.4->chr12:69747273-69748005:-,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	SNU620_STOMACH	0.01	0.21	0.06	FALSE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-1143G9.4--RAB11FIP1	3	3	RP11-1143G9.4	1710	chr12:69747296:-	RAB11FIP1	16586	chr8:37717885:-	INCL_NON_REF_SPLICE	YES	0	269	1	0.02	0.0257	0.0257	RP11-1143G9.4->chr12:69747273-69748005:-,RAB11FIP1->RAB11_family_interacting_protein_1,chr8:37716136-37756985:-	SNU620_STOMACH	0.02	1	0.0514	TRUE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	SDC1--PGC	3	3	SDC1	5720	chr2:20403646:-	PGC	20221	chr6:41705495:-	INCL_NON_REF_SPLICE	YES	6474	11440	0	0	0.0257	0.0257	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,PGC->chr6:41704449-41721847:-,progastricsin_(pepsinogen_C)	SNU620_STOMACH	0	0	0.0514	FALSE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	MET--LYZ	3	2	MET	25681	chr7:116436792:+	LYZ	34322	chr12:69747389:+	INCL_NON_REF_SPLICE	YES	2368	15921	0	0	0.0257	0.0172	MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+,LYZ->chr12:69742121-69748014:+,lysozyme	SNU620_STOMACH	0	0	0.0429	FALSE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ND4--MT-ND4L	3	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.71	0.0257	0.0172	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU620_STOMACH	0.71	1	0.0429	FALSE	344	821	44	306	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	3	0	0.73	1	0.0172	0.0515	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU620_STOMACH	0.73	1	0.0687	FALSE	275	511	55	178	0	FALSE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	2	6	ST7	1454	chr7:116593745:+	ATP6V0A4	47499	chr7:138444623:-	ONLY_REF_SPLICE	YES	44	594	0.15	0.01	0.0172	0.0515	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0.01	0.15	0.0687	FALSE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	APC--CTC-254B4.1	3	1	APC	1152	chr5:112043346:+	CTC-254B4.1	38572	chr5:106154178:-	ONLY_REF_SPLICE	YES	1	2	0.8	0.67	0.0257	0.0086	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,CTC-254B4.1->chr5:106150898-106346715:-	SNU620_STOMACH	0.67	0.8	0.0343	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1098	chrM:8624:+	MT-CO1	6183	chrM:7405:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU620_STOMACH	1	1	0.0257	FALSE	183	103	9	328	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU620_STOMACH	1	1	0.0257	FALSE	183	104	9	328	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU620_STOMACH	1	1	0.0257	FALSE	183	104	9	328	0	FALSE	ACH-000325
SNU620_STOMACH	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU620_STOMACH	1	1	0.0257	FALSE	189	492	56	216	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU620_STOMACH	1	1	0.0257	FALSE	499	1288	110	792	0	FALSE	ACH-000325
SNU620_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU620_STOMACH	1	1	0.0257	FALSE	499	1288	110	792	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0172	0.0343	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU620_STOMACH	0.86	0.86	0.0515	FALSE	467	2173	244	435	0	FALSE	ACH-000325
SNU620_STOMACH	SDC1--PGC	3	0	SDC1	5676	chr2:20403690:-	PGC	20182	chr6:41705534:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0257	0	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,PGC->chr6:41704449-41721847:-,progastricsin_(pepsinogen_C)	SNU620_STOMACH	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	APC--CTC-254B4.1	1	6	APC	1385	chr5:112043579:+	CTC-254B4.1	37418	chr5:106179915:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0.0515	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,CTC-254B4.1->chr5:106150898-106346715:-	SNU620_STOMACH	1	1	0.0601	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	SWI5--OXR1	2	2	SWI5	5642	chr9:131048312:+	OXR1	33672	chr8:107751686:+	ONLY_REF_SPLICE	YES	186	88	0.02	0.04	0.0172	0.0172	SWI5->SWI5_homologous_recombination_repair_protein,chr9:131037658-131051269:+,OXR1->chr8:107282473-107764922:+,oxidation_resistance_1	SNU620_STOMACH	0.02	0.04	0.0344	TRUE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	AC006159.3--USP49	1	5	AC006159.3	2366	chr7:116240845:-	USP49	16942	chr6:41774749:-	ONLY_REF_SPLICE	YES	3	35	0.67	0.15	0.0086	0.0429	AC006159.3->chr7:116211014-116254874:-,USP49->chr6:41757634-41863099:-,ubiquitin_specific_peptidase_49	SNU620_STOMACH	0.15	0.67	0.0515	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	ADAP1--C7orf50	2	1	ADAP1	9672	chr7:959605:-	C7orf50	29696	chr7:1049779:-	ONLY_REF_SPLICE	YES	539	253	0.01	0.01	0.0172	0.0086	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_REARRANGEMENT:-:[41579],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	SNU620_STOMACH	0.01	0.01	0.0258	FALSE	0	6	0	10	1	FALSE	ACH-000325
SNU620_STOMACH	COBLL1--BACE2	2	0	COBLL1	11011	chr2:165600197:-	BACE2	58241	chr21:42647298:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	COBLL1->chr2:165510134-165700189:-,cordon-bleu_WH2_repeat_protein_like_1,BACE2->beta-site_APP-cleaving_enzyme_2,chr21:42539728-42654445:+	SNU620_STOMACH	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	FOCAD--DENND4C	2	0	FOCAD	30310	chr9:20885229:+	DENND4C	64316	chr9:19276156:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	FOCAD->chr9:20658308-20995954:+,focadhesin,DENND4C->DENN_domain_containing_4C,chr9:19230433-19374139:+	SNU620_STOMACH	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	GMDS-AS1--GMDS	2	0	GMDS-AS1	2273	chr6:2249160:+	GMDS	43013	chr6:1742820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	GTEx_FI:{Salivary_Gland=[count:2=pct:5.1],Thyroid=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},LOCAL_INVERSION:+:-:[56],GMDS-AS1->GMDS_antisense_RNA_1_(head_to_head),chr6:2245982-2482256:+,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	SNU620_STOMACH	1	1	0.0172	TRUE	1	4	0	3	0	TRUE	ACH-000325
SNU620_STOMACH	MATR3--CTNNA1	2	0	MATR3	9772	chr5:138629494:+	CTNNA1	45982	chr5:138145727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	SNU620_STOMACH	1	1	0.0172	TRUE	3	14	0	14	0	FALSE	ACH-000325
SNU620_STOMACH	MORN1--PRKX	2	0	MORN1	6854	chr1:2316417:-	PRKX	34053	chrX:3533933:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	MORN1->MORN_repeat_containing_1,chr1:2252692-2323146:-,PRKX->chrX:3522411-3631649:-,protein_kinase,_X-linked	SNU620_STOMACH	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	RETSAT--ASNS	2	0	RETSAT	1285	chr2:85581459:-	ASNS	16966	chr7:97493808:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	RETSAT->chr2:85569211-85581743:-,retinol_saturase_(all-trans-retinol_13,14-reductase),ASNS->Oncogene{Bushman},asparagine_synthetase_(glutamine-hydrolyzing),chr7:97481430-97501854:-	SNU620_STOMACH	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU620_STOMACH	1	1	0.0172	FALSE	0	23	1	67	0	FALSE	ACH-000325
SNU620_STOMACH	RP11-114H23.1--RP11-114H23.2	1	3	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0086	0.0257	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU620_STOMACH	0.8	1	0.0343	FALSE	5	9	0	20	0	FALSE	ACH-000325
SNU620_STOMACH	ST7--ATP6V0A4	1	2	ST7	1454	chr7:116593745:+	ATP6V0A4	48626	chr7:138441285:-	ONLY_REF_SPLICE	YES	44	684	0.06	0	0.0086	0.0172	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,ATP6V0A4->ATPase_H+_transporting_V0_subunit_a4,chr7:138391040-138484305:-	SNU620_STOMACH	0	0.06	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000325
SNU620_STOMACH	APC--CTC-254B4.1	1	1	APC	1152	chr5:112043346:+	CTC-254B4.1	39651	chr5:106151247:-	ONLY_REF_SPLICE	YES	1	2	0.67	0.5	0.0086	0.0086	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,CTC-254B4.1->chr5:106150898-106346715:-	SNU620_STOMACH	0.5	0.67	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000325
SNU620_STOMACH	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	57	0	0.03	1	0.0086	0.0086	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SNU620_STOMACH	0.03	1	0.0172	FALSE	272	151	14	158	0	FALSE	ACH-000325
WM983B_SKIN	TIMM23B--LINC00843	21	8	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3079	0.1173	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	WM983B_SKIN	1	1	0.4252	TRUE	508	994	45	981	0	FALSE	ACH-000765
WM983B_SKIN	TIMM23--RP11-574K11.29	13	4	TIMM23	6952	chr10:51606988:-	RP11-574K11.29	13578	chr10:75473090:-	INCL_NON_REF_SPLICE	YES	39	0	0.3	1	0.1906	0.0587	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-574K11.29->chr10:75463493-75473339:-	WM983B_SKIN	0.3	1	0.2493	TRUE	1	1	0	6	1	TRUE	ACH-000765
WM983B_SKIN	MT-TA--MT-TC	8	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1173	0.0147	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	WM983B_SKIN	1	1	0.132	FALSE	462	80	0	856	0	FALSE	ACH-000765
WM983B_SKIN	GRK6--CIT	3	0	GRK6	8161	chr5:176861081:+	CIT	66163	chr12:120125125:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	PROTCLUST,GRK6->G_protein-coupled_receptor_kinase_6,chr5:176830205-176869902:+,CIT->chr12:120123595-120315095:-,citron_rho-interacting_serine/threonine_kinase	WM983B_SKIN	1	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	WM983B_SKIN	1	1	0.044	FALSE	462	80	0	856	0	FALSE	ACH-000765
WM983B_SKIN	RBM27--UBB	3	0	RBM27	5451	chr5:145609440:+	UBB	30671	chr17:16284411:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	WM983B_SKIN	1	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	STAM--RPL10A	3	0	STAM	13880	chr10:17750908:+	RPL10A	20281	chr6:35437171:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0	STAM->chr10:17686124-17757913:+,signal_transducing_adaptor_molecule,RPL10A->chr6:35436185-35438562:+,ribosomal_protein_L10a	WM983B_SKIN	1	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	SYNPR-AS1--FRMD4B	3	0	SYNPR-AS1	1074	chr3:63535654:-	FRMD4B	10982	chr3:69481912:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.044	0	SYNPR-AS1->SYNPR_antisense_RNA_1,chr3:63409272-63535727:-,FRMD4B->FERM_domain_containing_4B,chr3:69219141-69591734:-	WM983B_SKIN	1	1	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	CTNNA1--DAZAP1	2	0	CTNNA1	5795	chr5:138089199:+	DAZAP1	44256	chr19:1416456:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	DDX5--MAD1L1	2	0	DDX5	3124	chr17:62502194:-	MAD1L1	51181	chr7:1855864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	EYA1--PPP2R2D	2	0	EYA1	11839	chr8:72181975:-	PPP2R2D	27559	chr10:133757599:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	EYA1->EYA_transcriptional_coactivator_and_phosphatase_1,chr8:72109668-72274467:-,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	FGFR4--BMP1	2	0	FGFR4	3773	chr5:176516694:+	BMP1	32861	chr8:22059316:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	FGFR4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:176513887-176525145:+,fibroblast_growth_factor_receptor_4,BMP1->bone_morphogenetic_protein_1,chr8:22022249-22069839:+	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	IL1RAP--FBXL13	2	0	IL1RAP	11045	chr3:190282142:+	FBXL13	56881	chr7:102462650:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	IL1RAP->chr3:190231840-190375843:+,interleukin_1_receptor_accessory_protein,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	KATNA1--NSA2	2	0	KATNA1	7278	chr6:149924404:-	NSA2	21347	chr5:74072429:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	KATNA1->chr6:149916009-149970108:-,katanin_catalytic_subunit_A1,NSA2->NSA2,_ribosome_biogenesis_homolog,chr5:74062817-74072737:+	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	LCOR--RPL30	2	0	LCOR	3703	chr10:98667504:+	RPL30	25986	chr8:99055003:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	LCOR->chr10:98592017-98740800:+,ligand_dependent_nuclear_receptor_corepressor,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	NUDCD3--DPY19L1	2	0	NUDCD3	3713	chr7:44524567:-	DPY19L1	26300	chr7:35058208:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	NUDCD3->NudC_domain_containing_3,chr7:44418720-44530479:-,DPY19L1->chr7:34968488-35077883:-,dpy-19_like_1_(C._elegans)	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	PKM--PRPF6	2	0	PKM	1708	chr15:72523457:-	PRPF6	34559	chr20:62648076:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PRPF6->chr20:62612488-62664453:+,pre-mRNA_processing_factor_6	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	POLR3F--LRRC58	2	0	POLR3F	4038	chr20:18453553:+	LRRC58	15938	chr3:120053986:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	POLR3F->chr20:18447771-18465287:+,polymerase_(RNA)_III_subunit_F,LRRC58->chr3:120043356-120068186:-,leucine_rich_repeat_containing_58	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	PRICKLE2--PDE4B	2	0	PRICKLE2	5805	chr3:64184460:-	PDE4B	39272	chr1:66798191:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2,PDE4B->chr1:66258197-66840259:+,phosphodiesterase_4B	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	RAB11B--ZMYM2	2	0	RAB11B	1476	chr19:8455340:+	ZMYM2	10478	chr13:20534098:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	RAB11B->RAB11B,_member_RAS_oncogene_family,chr19:8454865-8469318:+,ZMYM2->Oncogene{Bushman},chr13:20532810-20665968:+,zinc_finger_MYM-type_containing_2	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	RP1-179N16.6--SRPK1	2	0	RP1-179N16.6	2169	chr6:36163814:-	SRPK1	24826	chr6:35810381:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	RP1-179N16.6->chr6:36114475-36164982:-,SRPK1->SRSF_protein_kinase_1,chr6:35800743-35889119:-	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	RP11-435B5.4--CHCHD6	2	0	RP11-435B5.4	4638	chr1:143462284:-	CHCHD6	32715	chr3:126676259:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	RP11-435B5.4->chr1:143354963-143467632:-,CHCHD6->chr3:126423063-126679249:+,coiled-coil-helix-coiled-coil-helix_domain_containing_6	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	RPL13--ETHE1	2	0	RPL13	1712	chr16:89627776:+	ETHE1	9931	chr19:44015718:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	RPL13->chr16:89627065-89630950:+,ribosomal_protein_L13,ETHE1->ETHE1,_persulfide_dioxygenase,chr19:44010871-44031396:-	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	SF1--CMC4	2	0	SF1	3289	chr11:64543970:-	CMC4	19231	chrX:154292308:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	SF1->chr11:64532078-64546258:-,splicing_factor_1,CMC4->C-x(9)-C_motif_containing_4,chrX:154289897-154299637:-	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	SNX2--AP3S1	2	0	SNX2	1216	chr5:122110906:+	AP3S1	22880	chr5:115202367:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	SNX2->chr5:122110691-122165803:+,sorting_nexin_2,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	SON--ZNF652	2	0	SON	2719	chr21:34918685:+	ZNF652	31826	chr17:47390207:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0293	0	SON->SON_DNA_binding_protein,chr21:34914924-34949812:+,ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652	WM983B_SKIN	1	1	0.0293	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	COPS3--SIPA1L3	1	1	COPS3	5281	chr17:17171199:-	SIPA1L3	19734	chr19:38519729:+	ONLY_REF_SPLICE	YES	46	1	0.04	0.67	0.0147	0.0147	COPS3->COP9_signalosome_subunit_3,chr17:17150141-17184607:-,SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3	WM983B_SKIN	0.04	0.67	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000765
WM983B_SKIN	LINC00511--CD300LF	1	1	LINC00511	8867	chr17:70588342:-	CD300LF	36196	chr17:72694620:-	ONLY_REF_SPLICE	YES	42	1	0.05	0.67	0.0147	0.0147	LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,CD300LF->CD300_molecule_like_family_member_f,chr17:72690452-72709117:-	WM983B_SKIN	0.05	0.67	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000765
SNUC5_LARGE_INTESTINE	TIMM23B--LINC00843	21	5	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3883	0.0924	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNUC5_LARGE_INTESTINE	1	1	0.4807	TRUE	508	994	45	981	0	FALSE	ACH-000970
SNUC5_LARGE_INTESTINE	CCAT1--PSD3	9	5	CCAT1	1279	chr8:128231055:-	PSD3	7478	chr8:18941894:-	INCL_NON_REF_SPLICE	YES	4	0	0.78	1	0.1664	0.0924	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3	SNUC5_LARGE_INTESTINE	0.78	1	0.2588	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	TIMM23--RP11-464F9.1	8	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	34	1	0.21	0.9	0.1479	0.0185	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNUC5_LARGE_INTESTINE	0.21	0.9	0.1664	TRUE	519	3926	326	965	0	FALSE	ACH-000970
SNUC5_LARGE_INTESTINE	PSD3--CASC8	7	3	PSD3	1525	chr8:18941716:-	CASC8	53501	chr8:128302305:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1294	0.0555	PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNUC5_LARGE_INTESTINE	1	1	0.1849	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	C15orf57--CBX3	5	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	4	7	0.64	0.5	0.0924	0.037	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNUC5_LARGE_INTESTINE	0.5	0.64	0.1294	TRUE	267	562	48	632	0	FALSE	ACH-000970
SNUC5_LARGE_INTESTINE	PCNX--KCNK6	4	0	PCNX	49905	chr14:71576835:+	KCNK6	62093	chr19:38818280:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0	PCNX->chr14:71374122-71582099:+,KCNK6->chr19:38810484-38819660:+,potassium_two_pore_domain_channel_subfamily_K_member_6	SNUC5_LARGE_INTESTINE	1	1	0.074	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	PLXNB2--BCL2L1	4	0	PLXNB2	19358	chr22:50713920:-	BCL2L1	26833	chr20:30253262:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0	PLXNB2->chr22:50713408-50746056:-,plexin_B2,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	SNUC5_LARGE_INTESTINE	1	1	0.074	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	ADCK3--SLC25A5	3	0	ADCK3	13118	chr1:227152789:+	SLC25A5	25623	chrX:118602466:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	ADCK3->aarF_domain_containing_kinase_3,chr1:227085237-227175246:+,SLC25A5->chrX:118602363-118605282:+,solute_carrier_family_25_member_5	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	C17orf76-AS1--SERINC2	3	0	C17orf76-AS1	1593	chr17:16342728:+	SERINC2	24463	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0555	0	C17orf76-AS1->chr17:16342136-16381992:+,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	4	0	2	2	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	EMP1--RP11-400N13.2	3	0	EMP1	1157	chr12:13349806:+	RP11-400N13.2	12783	chr1:222139687:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	EMP1->Oncogene{Bushman},chr12:13349650-13369708:+,epithelial_membrane_protein_1,RP11-400N13.2->chr1:222139683-222158306:+	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	FUBP1--RP11-400N13.2	3	0	FUBP1	18826	chr1:78409868:-	RP11-400N13.2	21959	chr1:222139687:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,RP11-400N13.2->chr1:222139683-222158306:+	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	LRRC59--HPS3	3	0	LRRC59	7247	chr17:48462604:-	HPS3	15277	chr3:148847452:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	LRRC59->chr17:48452420-48474914:-,leucine_rich_repeat_containing_59,HPS3->HPS3,_biogenesis_of_lysosomal_organelles_complex_2_subunit_1,chr3:148847371-148891519:+	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	NRF1--C10orf76	3	0	NRF1	14906	chr7:129367205:+	C10orf76	23138	chr10:103799882:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0555	0	NRF1->Oncogene{Bushman},chr7:129251555-129396922:+,nuclear_respiratory_factor_1,C10orf76->chr10:103605356-103815950:-,chromosome_10_open_reading_frame_76	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	PAPOLA--KLK1	3	0	PAPOLA	28152	chr14:97031551:+	KLK1	36394	chr19:51323699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,KLK1->chr19:51322404-51327043:-,kallikrein_1	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	PEX16--FLNA	3	0	PEX16	5668	chr11:45935696:-	FLNA	23182	chrX:153588003:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	PEX16->chr11:45931220-45940363:-,peroxisomal_biogenesis_factor_16,FLNA->chrX:153576892-153603006:-,filamin_A	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	RASA3--DNAJC5	3	0	RASA3	1177	chr13:114897910:-	DNAJC5	31988	chr20:62559688:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0555	0	RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-,DNAJC5->DnaJ_heat_shock_protein_family_(Hsp40)_member_C5,chr20:62526518-62567384:+	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	WASL--PTPN1	3	0	WASL	1347	chr7:123388775:-	PTPN1	17621	chr20:49127043:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	WASL->Wiskott-Aldrich_syndrome_like,chr7:123321989-123389121:-,PTPN1->chr20:49126891-49201299:+,protein_tyrosine_phosphatase,_non-receptor_type_1	SNUC5_LARGE_INTESTINE	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	RP6-114E22.1--RGS6	2	1	RP6-114E22.1	1131	chr14:72315453:+	RGS6	8366	chr14:72818803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0.0185	NEIGHBORS[24009],RP6-114E22.1->chr14:72315323-72375147:+,RGS6->chr14:72399156-73030654:+,regulator_of_G-protein_signaling_6	SNUC5_LARGE_INTESTINE	1	1	0.0555	FALSE	0	2	0	2	0	FALSE	ACH-000970
SNUC5_LARGE_INTESTINE	TYW1B--CALN1	2	1	TYW1B	9353	chr7:72209460:-	CALN1	27073	chr7:71743795:-	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.037	0.0185	TYW1B->chr7:72023729-72298777:-,tRNA-yW_synthesizing_protein_1_homolog_B,CALN1->calneuron_1,chr7:71244476-71912136:-	SNUC5_LARGE_INTESTINE	0.6	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	CALM2--UBB	2	0	CALM2	1161	chr2:47403580:-	UBB	16042	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,UBB->chr17:16284112-16286059:+,ubiquitin_B	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	CBL--MST1R	2	0	CBL	3966	chr11:119142591:+	MST1R	35949	chr3:49928083:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	CBL->ArcherDX_panel,Cbl_proto-oncogene,FoundationOne_panel,Oncogene{Bushman},chr11:119076752-119178859:+,MST1R->Oncogene{Bushman},chr3:49924435-49941299:-,macrophage_stimulating_1_receptor	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	DDX54--C12orf52	2	0	DDX54	8418	chr12:113612445:-	C12orf52	24632	chr12:113629115:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	LOCAL_INVERSION:-:+:[47],DDX54->DEAD-box_helicase_54,chr12:113594979-113623284:-,C12orf52->chr12:113623331-113630173:+	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	FGD3--NCS1	2	0	FGD3	17951	chr9:95784671:+	NCS1	29546	chr9:132963237:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	FGD3->FYVE,_RhoGEF_and_PH_domain_containing_3,chr9:95709733-95798518:+,NCS1->chr9:132934857-132999583:+,neuronal_calcium_sensor_1	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	PIGN--PAXIP1	2	0	PIGN	1275	chr18:59854077:-	PAXIP1	46498	chr7:154790494:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	PIGN->chr18:59710800-59854351:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_N,PAXIP1->PAX_interacting_protein_1,chr7:154735397-154794794:-	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	POLDIP3--YPEL1	2	0	POLDIP3	3081	chr22:42998776:-	YPEL1	17537	chr22:22065197:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	POLDIP3->chr22:42979727-43010968:-,polymerase_(DNA)_delta_interacting_protein_3,YPEL1->chr22:22051833-22090123:-,yippee_like_1	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	PPP1CB--GNAS	2	0	PPP1CB	1537	chr2:28975042:+	GNAS	32816	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	GTEx&tcga_normals:1/3694=0.03%,PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	STPG1--SDCCAG8	2	0	STPG1	7727	chr1:24727809:-	SDCCAG8	39104	chr1:243504341:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	STPG1->chr1:24683489-24743424:-,sperm_tail_PG-rich_repeat_containing_1,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	TRIM29--CSDE1	2	0	TRIM29	14256	chr11:119991281:-	CSDE1	33122	chr1:115282346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	TRIM29->chr11:119981983-120056237:-,tripartite_motif_containing_29,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	ZNF430--ABHD17C	2	0	ZNF430	2277	chr19:21205687:+	ABHD17C	22324	chr15:81041854:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	ZNF430->chr19:21203426-21242856:+,zinc_finger_protein_430,ABHD17C->abhydrolase_domain_containing_17C,chr15:80972025-81047962:+	SNUC5_LARGE_INTESTINE	1	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
SNUC5_LARGE_INTESTINE	POLDIP3--YPEL1	1	1	POLDIP3	3881	chr22:42997976:-	YPEL1	17537	chr22:22065197:-	ONLY_REF_SPLICE	YES	46	0	0.04	1	0.0185	0.0185	POLDIP3->chr22:42979727-43010968:-,polymerase_(DNA)_delta_interacting_protein_3,YPEL1->chr22:22051833-22090123:-,yippee_like_1	SNUC5_LARGE_INTESTINE	0.04	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000970
NCIH1435_LUNG	ERLIN2--TMEM68	230	281	ERLIN2	3513	chr8:37597964:+	TMEM68	30092	chr8:56657680:-	ONLY_REF_SPLICE	YES	121	131	0.81	0.8	3.0346	3.7075	{Klijn_CCL:Lung=1},ERLIN2->ER_lipid_raft_associated_2,chr8:37594117-37616619:+,TMEM68->chr8:56608983-56685966:-,transmembrane_protein_68	NCIH1435_LUNG	0.8	0.81	6.7421	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	PRCP--INTS4	102	57	PRCP	6864	chr11:82571019:-	INTS4	30977	chr11:77672184:-	ONLY_REF_SPLICE	YES	240	871	0.4	0.15	1.3458	0.752	{Klijn_CCL:Lung=1},PRCP->chr11:82534544-82681626:-,prolylcarboxypeptidase,INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4	NCIH1435_LUNG	0.15	0.4	2.0978	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	TIMM23B--LINC00843	106	40	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3985	0.5278	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1435_LUNG	1	1	1.9263	TRUE	508	994	45	981	0	FALSE	ACH-000852
NCIH1435_LUNG	RPS6KB2--KDM2A	87	51	RPS6KB2	5583	chr11:67200513:+	KDM2A	15017	chr11:66916526:+	ONLY_REF_SPLICE	YES	214	48	0.39	0.74	1.1479	0.6729	{Klijn_CCL:Lung=1},RPS6KB2->chr11:67195931-67202872:+,ribosomal_protein_S6_kinase_B2,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	NCIH1435_LUNG	0.39	0.74	1.8208	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	ERLIN2--TMEM68	46	80	ERLIN2	3513	chr8:37597964:+	TMEM68	32293	chr8:56652777:-	ONLY_REF_SPLICE	YES	121	189	0.51	0.4	0.6069	1.0555	{Klijn_CCL:Lung=1},ERLIN2->ER_lipid_raft_associated_2,chr8:37594117-37616619:+,TMEM68->chr8:56608983-56685966:-,transmembrane_protein_68	NCIH1435_LUNG	0.4	0.51	1.6624	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	TIMM23--RP11-464F9.1	65	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	408	5	0.14	0.93	0.8576	0.0264	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1435_LUNG	0.14	0.93	0.884	TRUE	519	3926	326	965	0	FALSE	ACH-000852
NCIH1435_LUNG	ERLIN2--TMEM68	8	210	ERLIN2	3513	chr8:37597964:+	TMEM68	31153	chr8:56656179:-	ONLY_REF_SPLICE	YES	121	145	0.64	0.6	0.1056	2.7707	{Klijn_CCL:Lung=1},ERLIN2->ER_lipid_raft_associated_2,chr8:37594117-37616619:+,TMEM68->chr8:56608983-56685966:-,transmembrane_protein_68	NCIH1435_LUNG	0.6	0.64	2.8763	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	ERLIN2--TMEM68	5	198	ERLIN2	2431	chr8:37595547:+	TMEM68	30092	chr8:56657680:-	ONLY_REF_SPLICE	YES	151	131	0.57	0.61	0.066	2.6124	{Klijn_CCL:Lung=1},ERLIN2->ER_lipid_raft_associated_2,chr8:37594117-37616619:+,TMEM68->chr8:56608983-56685966:-,transmembrane_protein_68	NCIH1435_LUNG	0.57	0.61	2.6784	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	DDX23--RP11-850F7.7	34	11	DDX23	11526	chr12:49228177:-	RP11-850F7.7	20297	chr12:55078853:+	INCL_NON_REF_SPLICE	YES	428	0	0.1	1	0.4486	0.1451	DDX23->DEAD-box_helicase_23,chr12:49223547-49246625:-,RP11-850F7.7->chr12:55076757-55081218:+	NCIH1435_LUNG	0.1	1	0.5937	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	33	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	14543	4	0	0.9	0.4354	0.0264	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	0.9	0.4618	FALSE	230	193	14	283	0	FALSE	ACH-000852
NCIH1435_LUNG	PLXDC1--TAF13	32	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4222	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH1435_LUNG	1	1	0.4222	TRUE	7	10	0	216	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-TA--MT-TC	23	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3035	0.0528	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1435_LUNG	1	1	0.3563	FALSE	462	80	0	856	0	FALSE	ACH-000852
NCIH1435_LUNG	CLNS1A--TENM4	15	18	CLNS1A	2353	chr11:77340808:-	TENM4	61163	chr11:78423759:-	ONLY_REF_SPLICE	YES	3968	1	0.01	0.97	0.1979	0.2375	CLNS1A->chloride_nucleotide-sensitive_channel_1A,chr11:77225981-77348850:-,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	NCIH1435_LUNG	0.01	0.97	0.4354	TRUE	0	0	0	1	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	17	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14668	6	0	0.76	0.2243	0.0264	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	0.76	0.2507	FALSE	230	198	14	283	0	FALSE	ACH-000852
NCIH1435_LUNG	MICAL3--SIRPD	13	11	MICAL3	2388	chr22:18484159:-	SIRPD	66269	chr20:1532684:-	ONLY_REF_SPLICE	YES	25	1	0.49	0.96	0.1715	0.1451	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SIRPD->chr20:1514897-1539489:-,signal_regulatory_protein_delta	NCIH1435_LUNG	0.49	0.96	0.3166	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	RP11-114H23.1--RP11-114H23.2	12	15	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.93	1	0.1583	0.1979	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH1435_LUNG	0.93	1	0.3562	FALSE	81	155	12	160	0	FALSE	ACH-000852
NCIH1435_LUNG	CTD-2152M20.2--GOLPH3	13	6	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	1	78	0.95	0.2	0.1715	0.0792	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	NCIH1435_LUNG	0.2	0.95	0.2507	TRUE	10	26	2	24	0	FALSE	ACH-000852
NCIH1435_LUNG	RSF1--GAB2	12	9	RSF1	13746	chr11:77411766:-	GAB2	40730	chr11:77991947:-	ONLY_REF_SPLICE	YES	565	130	0.04	0.14	0.1583	0.1187	RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	NCIH1435_LUNG	0.04	0.14	0.277	TRUE	0	0	0	1	0	FALSE	ACH-000852
NCIH1435_LUNG	GPR107--LAMA2	9	18	GPR107	14977	chr9:132869818:+	LAMA2	34379	chr6:129371063:+	ONLY_REF_SPLICE	YES	75	0	0.26	1	0.1187	0.2375	GPR107->G_protein-coupled_receptor_107,chr9:132815705-132902448:+,LAMA2->chr6:129204342-129837714:+,laminin_subunit_alpha_2	NCIH1435_LUNG	0.26	1	0.3562	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	SCAND2P--KIF7	11	8	SCAND2P	7108	chr15:85181708:+	KIF7	16574	chr15:90193172:-	ONLY_REF_SPLICE	YES	17	3	0.53	0.86	0.1451	0.1056	SCAND2P->SCAN_domain_containing_2_pseudogene,chr15:85174682-85185695:+,KIF7->chr15:90152020-90198682:-,kinesin_family_member_7	NCIH1435_LUNG	0.53	0.86	0.2507	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	9	13	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18861	85	0	0.21	0.1187	0.1715	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	0.21	0.2902	FALSE	231	217	16	283	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	11	5	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17264	6	0	0.73	0.1451	0.066	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	0.73	0.2111	FALSE	231	205	14	283	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ATP6--MT-ND1	12	0	MT-ATP6	1126	chrM:8652:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1583	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1435_LUNG	1	1	0.1583	FALSE	78	55	12	7	0	FALSE	ACH-000852
NCIH1435_LUNG	TENM4--ACER3	10	5	TENM4	7069	chr11:78926853:-	ACER3	63826	chr11:76579164:+	ONLY_REF_SPLICE	YES	0	112	1	0.12	0.1319	0.066	TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4,ACER3->alkaline_ceramidase_3,chr11:76571911-76737841:+	NCIH1435_LUNG	0.12	1	0.1979	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	7	11	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20923	0	0	1	0.0924	0.1451	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	1	0.2375	FALSE	231	217	16	283	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	7	9	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	23326	747	0	0.02	0.0924	0.1187	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	0.02	0.2111	FALSE	231	217	16	283	0	FALSE	ACH-000852
NCIH1435_LUNG	HMGN2--KRT8	9	0	HMGN2	1167	chr1:26799107:+	KRT8	12695	chr12:53298761:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1187	0	HMGN2->chr1:26798941-26802463:+,high_mobility_group_nucleosomal_binding_domain_2,KRT8->chr12:53290977-53343738:-,keratin_8	NCIH1435_LUNG	1	1	0.1187	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	6	11	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	18833	796	0	0.02	0.0792	0.1451	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	0.02	0.2243	FALSE	231	217	16	283	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	4	16	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2619	85	0.01	0.19	0.0528	0.2111	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0.01	0.19	0.2639	FALSE	216	209	16	281	0	FALSE	ACH-000852
NCIH1435_LUNG	NPM1P24--SET	8	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1056	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1435_LUNG	1	1	0.1056	TRUE	0	0	0	434	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	4	15	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	18569	0	0	1	0.0528	0.1979	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	1	0.2507	FALSE	231	217	16	283	0	FALSE	ACH-000852
NCIH1435_LUNG	CCSER2--LINC00858	5	10	CCSER2	4876	chr10:86133571:+	LINC00858	28144	chr10:86047980:+	ONLY_REF_SPLICE	YES	31	0	0.33	1	0.066	0.1319	LOCAL_REARRANGEMENT:+:[33927],CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,LINC00858->chr10:86039736-86054415:+,long_intergenic_non-protein_coding_RNA_858	NCIH1435_LUNG	0.33	1	0.1979	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	5	9	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	19506	1539	0	0.01	0.066	0.1187	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	0.01	0.1847	FALSE	231	217	16	283	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	3	16	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	17493	0	0	1	0.0396	0.2111	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	1	0.2507	FALSE	231	217	16	283	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	3	16	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4931	85	0	0.18	0.0396	0.2111	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	0.18	0.2507	FALSE	218	210	16	281	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	4	12	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	19235	0	0	1	0.0528	0.1583	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	1	0.2111	FALSE	231	217	16	283	0	FALSE	ACH-000852
NCIH1435_LUNG	RP11-722M1.1--RP11-431M7.2	4	12	RP11-722M1.1	7110	chr4:36500049:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	YES	11	17	0.59	0.48	0.0528	0.1583	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	NCIH1435_LUNG	0.48	0.59	0.2111	TRUE	0	1	0	4	1	TRUE	ACH-000852
NCIH1435_LUNG	MICAL3--SIRPD	5	7	MICAL3	1279	chr22:18507047:-	SIRPD	66269	chr20:1532684:-	ONLY_REF_SPLICE	YES	8	1	0.6	0.92	0.066	0.0924	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SIRPD->chr20:1514897-1539489:-,signal_regulatory_protein_delta	NCIH1435_LUNG	0.6	0.92	0.1584	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	4	11	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	23589	85	0	0.15	0.0528	0.1451	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	0.15	0.1979	FALSE	231	217	16	283	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	3	15	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18483	0	0	1	0.0396	0.1979	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	1	0.2375	FALSE	231	217	16	283	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	4	11	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19621	6	0	0.71	0.0528	0.1451	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	0.71	0.1979	FALSE	231	217	16	283	0	FALSE	ACH-000852
NCIH1435_LUNG	GPR107--LAMA2	2	18	GPR107	16034	chr9:132872705:+	LAMA2	34379	chr6:129371063:+	ONLY_REF_SPLICE	YES	79	0	0.2	1	0.0264	0.2375	GPR107->G_protein-coupled_receptor_107,chr9:132815705-132902448:+,LAMA2->chr6:129204342-129837714:+,laminin_subunit_alpha_2	NCIH1435_LUNG	0.2	1	0.2639	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	4	10	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21703	85	0	0.14	0.0528	0.1319	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	0.14	0.1847	FALSE	231	217	16	283	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	3	13	MT-ND4	1824	chrM:11583:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18871	6	0	0.73	0.0396	0.1715	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	0.73	0.2111	FALSE	231	217	16	283	0	FALSE	ACH-000852
NCIH1435_LUNG	MICAL3--SIRPD	3	12	MICAL3	2388	chr22:18484159:-	SIRPD	66258	chr20:1532695:-	INCL_NON_REF_SPLICE	NO	25	1	0.38	0.94	0.0396	0.1583	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SIRPD->chr20:1514897-1539489:-,signal_regulatory_protein_delta	NCIH1435_LUNG	0.38	0.94	0.1979	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	6	0	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0792	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	1	1	0.0792	FALSE	231	205	14	283	0	FALSE	ACH-000852
NCIH1435_LUNG	NPM1P24--SET	6	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0792	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1435_LUNG	1	1	0.0792	TRUE	0	0	0	434	0	FALSE	ACH-000852
NCIH1435_LUNG	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0792	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1435_LUNG	1	1	0.0792	FALSE	292	1546	117	613	0	FALSE	ACH-000852
NCIH1435_LUNG	DDX23--RP11-850F7.7	4	7	DDX23	9799	chr12:49229904:-	RP11-850F7.7	20297	chr12:55078853:+	ONLY_REF_SPLICE	YES	515	0	0.02	1	0.0528	0.0924	DDX23->DEAD-box_helicase_23,chr12:49223547-49246625:-,RP11-850F7.7->chr12:55076757-55081218:+	NCIH1435_LUNG	0.02	1	0.1452	TRUE	0	0	0	1	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	3	11	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	21703	0	0	1	0.0396	0.1451	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	1	0.1847	FALSE	231	217	16	283	0	FALSE	ACH-000852
NCIH1435_LUNG	CLNS1A--TENM4	1	18	CLNS1A	2353	chr11:77340808:-	TENM4	60142	chr11:78431435:-	ONLY_REF_SPLICE	YES	3968	1	0	0.95	0.0132	0.2375	CLNS1A->chloride_nucleotide-sensitive_channel_1A,chr11:77225981-77348850:-,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	NCIH1435_LUNG	0	0.95	0.2507	TRUE	0	0	0	1	0	FALSE	ACH-000852
NCIH1435_LUNG	CLNS1A--TENM4	3	10	CLNS1A	1216	chr11:77348635:-	TENM4	61163	chr11:78423759:-	ONLY_REF_SPLICE	YES	3727	1	0	0.93	0.0396	0.1319	CLNS1A->chloride_nucleotide-sensitive_channel_1A,chr11:77225981-77348850:-,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	NCIH1435_LUNG	0	0.93	0.1715	TRUE	0	0	0	1	0	FALSE	ACH-000852
NCIH1435_LUNG	CLNS1A--TENM4	3	10	CLNS1A	2353	chr11:77340808:-	TENM4	62396	chr11:78419560:-	ONLY_REF_SPLICE	YES	3968	11	0	0.54	0.0396	0.1319	CLNS1A->chloride_nucleotide-sensitive_channel_1A,chr11:77225981-77348850:-,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	NCIH1435_LUNG	0	0.54	0.1715	TRUE	0	0	0	1	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	21936	0	0	1	0.0396	0.1319	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	1	0.1715	FALSE	231	217	16	283	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	5	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14543	6	0	0.54	0.066	0.0264	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	0.54	0.0924	FALSE	230	193	14	283	0	FALSE	ACH-000852
NCIH1435_LUNG	NRIP1--AF127936.7	5	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.066	0.0132	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1435_LUNG	0.55	1	0.0792	FALSE	125	705	46	456	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ATP6--MT-ND1	4	4	MT-ATP6	1558	chrM:9084:+	MT-ND1	4887	chrM:3512:+	INCL_NON_REF_SPLICE	YES	3098	7958	0	0	0.0528	0.0528	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1435_LUNG	0	0	0.1056	FALSE	78	55	12	7	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.066	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	1	1	0.066	FALSE	231	205	14	283	0	FALSE	ACH-000852
NCIH1435_LUNG	RP11-114H23.1--RP11-114H23.2	4	4	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	2	7	0.8	0.53	0.0528	0.0528	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH1435_LUNG	0.53	0.8	0.1056	FALSE	81	155	12	160	0	FALSE	ACH-000852
NCIH1435_LUNG	CLNS1A--TENM4	3	7	CLNS1A	1216	chr11:77348635:-	TENM4	62396	chr11:78419560:-	ONLY_REF_SPLICE	YES	3727	11	0	0.48	0.0396	0.0924	CLNS1A->chloride_nucleotide-sensitive_channel_1A,chr11:77225981-77348850:-,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	NCIH1435_LUNG	0	0.48	0.132	TRUE	0	0	0	1	0	FALSE	ACH-000852
NCIH1435_LUNG	MICAL3--SIRPD	4	2	MICAL3	2388	chr22:18484159:-	SIRPD	67620	chr20:1517956:-	ONLY_REF_SPLICE	YES	25	12	0.19	0.33	0.0528	0.0264	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SIRPD->chr20:1514897-1539489:-,signal_regulatory_protein_delta	NCIH1435_LUNG	0.19	0.33	0.0792	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	RP11-120D5.1--MID1	3	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	87	0.67	0.08	0.0396	0.066	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1435_LUNG	0.08	0.67	0.1056	FALSE	16	356	14	466	0	FALSE	ACH-000852
NCIH1435_LUNG	RSF1--GAB2	2	9	RSF1	13737	chr11:77411775:-	GAB2	40730	chr11:77991947:-	ONLY_REF_SPLICE	YES	519	130	0.02	0.08	0.0264	0.1187	RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	NCIH1435_LUNG	0.02	0.08	0.1451	TRUE	0	0	0	1	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ATP6--MT-ND1	4	0	MT-ATP6	1111	chrM:8637:+	MT-ND1	4880	chrM:3505:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1435_LUNG	1	1	0.0528	FALSE	78	55	12	7	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ATP6--MT-ND1	3	4	MT-ATP6	1554	chrM:9080:+	MT-ND1	4888	chrM:3513:+	INCL_NON_REF_SPLICE	YES	3672	7932	0	0	0.0396	0.0528	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1435_LUNG	0	0	0.0924	FALSE	78	55	12	7	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	20863	1539	0	0	0.0396	0.0528	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	0	0	0.0924	FALSE	231	205	14	283	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1435_LUNG	1	1	0.0528	FALSE	231	204	14	283	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1435_LUNG	1	1	0.0528	FALSE	462	80	0	856	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ATP6--MT-ND1	3	3	MT-ATP6	1186	chrM:8712:+	MT-ND1	4684	chrM:3309:+	INCL_NON_REF_SPLICE	YES	15561	0	0	1	0.0396	0.0396	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1435_LUNG	0	1	0.0792	FALSE	78	55	12	7	0	FALSE	ACH-000852
NCIH1435_LUNG	RP11-722M1.1--RP11-431M7.2	1	11	RP11-722M1.1	4366	chr4:36584279:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	YES	21	17	0.36	0.41	0.0132	0.1451	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	NCIH1435_LUNG	0.36	0.41	0.1583	TRUE	0	1	0	4	1	TRUE	ACH-000852
NCIH1435_LUNG	RP11-6N13.1--CTD-2374C24.1	2	6	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0264	0.0792	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH1435_LUNG	0.89	1	0.1056	TRUE	5	12	0	42	0	FALSE	ACH-000852
NCIH1435_LUNG	SCAND2P--KIF7	1	10	SCAND2P	7108	chr15:85181708:+	KIF7	16471	chr15:90193275:-	ONLY_REF_SPLICE	YES	17	3	0.39	0.79	0.0132	0.1319	SCAND2P->SCAN_domain_containing_2_pseudogene,chr15:85174682-85185695:+,KIF7->chr15:90152020-90198682:-,kinesin_family_member_7	NCIH1435_LUNG	0.39	0.79	0.1451	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	MICAL3--SIRPD	3	1	MICAL3	2388	chr22:18484159:-	SIRPD	68776	chr20:1515087:-	ONLY_REF_SPLICE	YES	25	18	0.14	0.18	0.0396	0.0132	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SIRPD->chr20:1514897-1539489:-,signal_regulatory_protein_delta	NCIH1435_LUNG	0.14	0.18	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	RPS6KB2--KDM2A	2	5	RPS6KB2	2136	chr11:67197066:+	KDM2A	16170	chr11:66947550:+	ONLY_REF_SPLICE	NO	366	41	0.02	0.15	0.0264	0.066	{Klijn_CCL:Lung=1},RPS6KB2->chr11:67195931-67202872:+,ribosomal_protein_S6_kinase_B2,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	NCIH1435_LUNG	0.02	0.15	0.0924	TRUE	0	0	0	1	0	FALSE	ACH-000852
NCIH1435_LUNG	RSF1--GAB2	1	9	RSF1	13746	chr11:77411766:-	GAB2	37444	chr11:78075149:-	ONLY_REF_SPLICE	YES	565	136	0.02	0.07	0.0132	0.1187	RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	NCIH1435_LUNG	0.02	0.07	0.1319	TRUE	0	0	0	1	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ATP6--MT-ND1	3	0	MT-ATP6	1066	chrM:8592:+	MT-ND1	5123	chrM:3748:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1435_LUNG	1	1	0.0396	FALSE	78	55	12	7	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ATP6--MT-ND1	3	0	MT-ATP6	1111	chrM:8637:+	MT-ND1	5177	chrM:3802:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1435_LUNG	1	1	0.0396	FALSE	78	55	12	7	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ATP6--MT-ND1	3	0	MT-ATP6	1098	chrM:8624:+	MT-ND1	4697	chrM:3322:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1435_LUNG	1	1	0.0396	FALSE	78	55	12	7	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ATP6--MT-ND1	3	0	MT-ATP6	1158	chrM:8684:+	MT-ND1	4973	chrM:3598:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1435_LUNG	1	1	0.0396	FALSE	78	55	12	7	0	FALSE	ACH-000852
NCIH1435_LUNG	MT-ATP6--MT-ND1	3	0	MT-ATP6	1080	chrM:8606:+	MT-ND1	4887	chrM:3512:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH1435_LUNG	1	1	0.0396	FALSE	78	55	12	7	0	FALSE	ACH-000852
NCIH1435_LUNG	PICALM--SYTL2	3	0	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	NCIH1435_LUNG	1	1	0.0396	TRUE	4	2	0	20	0	FALSE	ACH-000852
NCIH1435_LUNG	RPS6KB2--KDM2A	1	8	RPS6KB2	5583	chr11:67200513:+	KDM2A	16170	chr11:66947550:+	ONLY_REF_SPLICE	YES	214	41	0.04	0.18	0.0132	0.1056	{Klijn_CCL:Lung=1},RPS6KB2->chr11:67195931-67202872:+,ribosomal_protein_S6_kinase_B2,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	NCIH1435_LUNG	0.04	0.18	0.1188	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	SCARB1--UBC	3	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH1435_LUNG	1	1	0.0396	TRUE	55	66	6	101	0	FALSE	ACH-000852
NCIH1435_LUNG	RP11-120D5.1--MID1	1	5	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	87	0.67	0.06	0.0132	0.066	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1435_LUNG	0.06	0.67	0.0792	FALSE	2	31	0	60	0	FALSE	ACH-000852
NCIH1435_LUNG	RP11-722M1.1--RP11-431M7.2	1	5	RP11-722M1.1	2124	chr4:36617076:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	YES	13	17	0.32	0.26	0.0132	0.066	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	NCIH1435_LUNG	0.26	0.32	0.0792	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	RSF1--GAB2	2	1	RSF1	8778	chr11:77451776:-	GAB2	40730	chr11:77991947:-	ONLY_REF_SPLICE	YES	716	130	0	0.02	0.0264	0.0132	RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	NCIH1435_LUNG	0	0.02	0.0396	FALSE	0	0	0	1	0	FALSE	ACH-000852
NCIH1435_LUNG	ADAP1--SUN1	2	0	ADAP1	9672	chr7:959605:-	SUN1	48590	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	NCIH1435_LUNG	1	1	0.0264	TRUE	0	4	0	9	2	FALSE	ACH-000852
NCIH1435_LUNG	CTD-2152M20.2--GOLPH3	1	4	CTD-2152M20.2	2549	chr5:32106507:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	78	1	0.06	0.0132	0.0528	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	NCIH1435_LUNG	0.06	1	0.066	TRUE	10	26	2	24	0	FALSE	ACH-000852
NCIH1435_LUNG	MORN1--RER1	2	0	MORN1	6854	chr1:2316417:-	RER1	29529	chr1:2327223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},LOCAL_INVERSION:-:+:[121],MORN1->MORN_repeat_containing_1,chr1:2252692-2323146:-,RER1->chr1:2323267-2336883:+,retention_in_endoplasmic_reticulum_sorting_receptor_1	NCIH1435_LUNG	1	1	0.0264	TRUE	0	1	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	NRG1--LPHN3	2	0	NRG1	11459	chr8:32579560:+	LPHN3	36905	chr4:62542544:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	NRG1->chr8:31496902-32622548:+,neuregulin_1,LPHN3->chr4:62066976-62944053:+	NCIH1435_LUNG	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	PLEKHA1--TACC2	2	0	PLEKHA1	1111	chr10:124134322:+	TACC2	75405	chr10:124008158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1,TACC2->chr10:123748689-124014060:+,transforming_acidic_coiled-coil_containing_protein_2	NCIH1435_LUNG	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	TGFBR2--CMC1	2	0	TGFBR2	4911	chr3:30691952:+	CMC1	18240	chr3:28304782:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=2},TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,CMC1->C-x9-C_motif_containing_1,chr3:28283075-28366633:+	NCIH1435_LUNG	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	CTD-2152M20.2--GOLPH3	1	3	CTD-2152M20.2	1447	chr5:32121601:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	78	1	0.05	0.0132	0.0396	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	NCIH1435_LUNG	0.05	1	0.0528	TRUE	6	16	0	6	0	FALSE	ACH-000852
NCIH1435_LUNG	POLH--PRICKLE4	1	3	POLH	1291	chr6:43544177:+	PRICKLE4	24868	chr6:41756970:+	ONLY_REF_SPLICE	YES	70	1652	0.05	0	0.0132	0.0396	POLH->Oncogene{Bushman},chr6:43543887-43586701:+,polymerase_(DNA)_eta,PRICKLE4->chr6:41748087-41757879:+,prickle_planar_cell_polarity_protein_4	NCIH1435_LUNG	0	0.05	0.0528	FALSE	0	0	0	1	0	FALSE	ACH-000852
NCIH1435_LUNG	MICAL3--SIRPD	1	2	MICAL3	1279	chr22:18507047:-	SIRPD	67620	chr20:1517956:-	ONLY_REF_SPLICE	NO	8	12	0.27	0.2	0.0132	0.0264	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SIRPD->chr20:1514897-1539489:-,signal_regulatory_protein_delta	NCIH1435_LUNG	0.2	0.27	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000852
NCIH1435_LUNG	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0132	0.0264	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1435_LUNG	1	1	0.0396	FALSE	416	2512	207	587	0	FALSE	ACH-000852
NCIH1435_LUNG	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	299	296	0.01	0.01	0.0132	0.0132	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	NCIH1435_LUNG	0.01	0.01	0.0264	FALSE	16	22	0	27	0	FALSE	ACH-000852
NCIH1435_LUNG	C19orf25--DAZAP1	1	1	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	67	182	0.03	0.01	0.0132	0.0132	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	NCIH1435_LUNG	0.01	0.03	0.0264	FALSE	6	7	1	24	0	FALSE	ACH-000852
NCIH1435_LUNG	CHD2--RP11-150D5.2	1	1	CHD2	30912	chr15:93518180:+	RP11-150D5.2	62114	chr16:76262757:-	ONLY_REF_SPLICE	NO	68	0	0.03	1	0.0132	0.0132	CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,RP11-150D5.2->chr16:76262283-76296263:-	NCIH1435_LUNG	0.03	1	0.0264	TRUE	0	0	0	1	0	FALSE	ACH-000852
NCIH1435_LUNG	GIGYF2--EFHD1	1	1	GIGYF2	4148	chr2:233568199:+	EFHD1	61975	chr2:233527512:+	ONLY_REF_SPLICE	YES	83	0	0.02	1	0.0132	0.0132	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},YOSHIHARA_TCGA_num_samples[BRCA:2],LOCAL_REARRANGEMENT:+:[14518],GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,EFHD1->EF-hand_domain_family_member_D1,chr2:233470767-233547491:+	NCIH1435_LUNG	0.02	1	0.0264	TRUE	0	0	0	1	0	FALSE	ACH-000852
NCIH1435_LUNG	LCOR--TM9SF3	1	1	LCOR	3703	chr10:98667504:+	TM9SF3	26209	chr10:98325183:-	ONLY_REF_SPLICE	YES	60	864	0.03	0	0.0132	0.0132	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LCOR->chr10:98592017-98740800:+,ligand_dependent_nuclear_receptor_corepressor,TM9SF3->chr10:98277866-98347209:-,transmembrane_9_superfamily_member_3	NCIH1435_LUNG	0	0.03	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000852
NCIH1435_LUNG	MYH9--CACNG2	1	1	MYH9	1212	chr22:36783852:-	CACNG2	46787	chr22:36983595:-	ONLY_REF_SPLICE	NO	548	0	0	1	0.0132	0.0132	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,CACNG2->calcium_voltage-gated_channel_auxiliary_subunit_gamma_2,chr22:36959968-37099603:-	NCIH1435_LUNG	0	1	0.0264	FALSE	0	2	0	1	2	FALSE	ACH-000852
NCIH1435_LUNG	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.09	1	0.0132	0.0132	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1435_LUNG	0.09	1	0.0264	FALSE	164	806	69	479	0	FALSE	ACH-000852
NCIH1435_LUNG	PPP2R4--LRRC8A	1	1	PPP2R4	5698	chr9:131885417:+	LRRC8A	31207	chr9:131678375:+	ONLY_REF_SPLICE	YES	522	141	0	0.01	0.0132	0.0132	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,LRRC8A->chr9:131644391-131680318:+,leucine-rich_repeat_containing_8_family_member_A	NCIH1435_LUNG	0	0.01	0.0264	FALSE	0	0	0	1	0	FALSE	ACH-000852
NCIH1435_LUNG	SPTLC2--ALKBH1	1	1	SPTLC2	5014	chr14:78043110:-	ALKBH1	27825	chr14:78161243:-	ONLY_REF_SPLICE	YES	60	63	0.03	0.03	0.0132	0.0132	LOCAL_REARRANGEMENT:-:[55631],SPTLC2->chr14:77972340-78083116:-,serine_palmitoyltransferase_long_chain_base_subunit_2,ALKBH1->alkB_homolog_1,_histone_H2A_dioxygenase,chr14:78138747-78174363:-	NCIH1435_LUNG	0.03	0.03	0.0264	TRUE	0	0	0	1	0	FALSE	ACH-000852
NCIH1435_LUNG	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0132	0.0132	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1435_LUNG	1	1	0.0264	TRUE	62	24	1	171	0	FALSE	ACH-000852
TUHR14TKB_KIDNEY	EWSR1--ARHGAP19	286	248	EWSR1	9174	chr22:29674205:+	ARHGAP19	27243	chr10:99025882:-	ONLY_REF_SPLICE	YES	90	0	0.86	1	3.4396	2.9826	EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,ARHGAP19->Rho_GTPase_activating_protein_19,chr10:98978996-99052413:-	TUHR14TKB_KIDNEY	0.86	1	6.4222	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	ZC3H7A--BCAR4	99	36	ZC3H7A	9531	chr16:11868092:-	BCAR4	32219	chr16:11914154:-	ONLY_REF_SPLICE	YES	57	0	0.7	1	1.1906	0.433	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	TUHR14TKB_KIDNEY	0.7	1	1.6236	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	MT-TA--MT-TC	43	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5171	0.0962	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TUHR14TKB_KIDNEY	1	1	0.6133	FALSE	462	80	0	856	0	FALSE	ACH-000317
TUHR14TKB_KIDNEY	GSK3B--ME3	32	10	GSK3B	2071	chr3:119812194:-	ME3	23685	chr11:86383000:-	ONLY_REF_SPLICE	YES	20	0	0.68	1	0.3848	0.1203	GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,ME3->Oncogene{Bushman},chr11:86152150-86383678:-,malic_enzyme_3	TUHR14TKB_KIDNEY	0.68	1	0.5051	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	GSK3B--ME3	27	8	GSK3B	2071	chr3:119812194:-	ME3	26442	chr11:86270865:-	ONLY_REF_SPLICE	YES	20	5	0.64	0.88	0.3247	0.0962	GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta,ME3->Oncogene{Bushman},chr11:86152150-86383678:-,malic_enzyme_3	TUHR14TKB_KIDNEY	0.64	0.88	0.4209	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	RIC8B--RFX4	27	7	RIC8B	2879	chr12:107177822:+	RFX4	51044	chr12:107125908:+	ONLY_REF_SPLICE	YES	12	0	0.74	1	0.3247	0.0842	LOCAL_REARRANGEMENT:+:[11792],RIC8B->RIC8_guanine_nucleotide_exchange_factor_B,chr12:107168373-107283090:+,RFX4->chr12:106976685-107156581:+,regulatory_factor_X4	TUHR14TKB_KIDNEY	0.74	1	0.4089	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	TIMM23B--LINC00843	16	9	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1924	0.1082	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TUHR14TKB_KIDNEY	1	1	0.3006	TRUE	508	994	45	981	0	FALSE	ACH-000317
TUHR14TKB_KIDNEY	TIMM23--RP11-464F9.1	13	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	105	4	0.12	0.79	0.1563	0.0241	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TUHR14TKB_KIDNEY	0.12	0.79	0.1804	TRUE	519	3926	326	965	0	FALSE	ACH-000317
TUHR14TKB_KIDNEY	MT-ND6--MT-TE	13	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1563	0.012	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TUHR14TKB_KIDNEY	1	1	0.1683	FALSE	499	1288	110	792	0	FALSE	ACH-000317
TUHR14TKB_KIDNEY	MT-ND6--MT-TE	7	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0842	0.1443	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TUHR14TKB_KIDNEY	0.9	1	0.2285	FALSE	499	1288	110	792	0	FALSE	ACH-000317
TUHR14TKB_KIDNEY	RABL6--KIAA1984	9	0	RABL6	10093	chr9:139723936:+	KIAA1984	25966	chr9:139694841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1082	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,LOCAL_REARRANGEMENT:+:[181],RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+,KIAA1984->chr9:139690802-139702193:+	TUHR14TKB_KIDNEY	1	1	0.1082	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	MT-TA--MT-TC	6	9	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0.1082	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TUHR14TKB_KIDNEY	1	1	0.1804	FALSE	462	80	0	856	0	FALSE	ACH-000317
TUHR14TKB_KIDNEY	RP11-123O10.4--GRIP1	8	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0962	0.012	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TUHR14TKB_KIDNEY	1	1	0.1082	FALSE	416	2512	207	587	0	FALSE	ACH-000317
TUHR14TKB_KIDNEY	ARHGAP19--EMID1	6	4	ARHGAP19	6881	chr10:99019159:-	EMID1	35873	chr22:29654806:+	ONLY_REF_SPLICE	YES	3	5	0.77	0.67	0.0722	0.0481	ARHGAP19->Rho_GTPase_activating_protein_19,chr10:98978996-99052413:-,EMID1->EMI_domain_containing_1,chr22:29601840-29655586:+	TUHR14TKB_KIDNEY	0.67	0.77	0.1203	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	MT-ND6--MT-TE	3	14	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0361	0.1684	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TUHR14TKB_KIDNEY	0.89	1	0.2045	FALSE	499	1288	110	792	0	FALSE	ACH-000317
TUHR14TKB_KIDNEY	BAI2--DCUN1D4	5	1	BAI2	6970	chr1:32221600:-	DCUN1D4	31769	chr4:52729603:+	ONLY_REF_SPLICE	YES	1	14	0.86	0.3	0.0601	0.012	BAI2->chr1:32192718-32230494:-,DCUN1D4->chr4:52709166-52783003:+,defective_in_cullin_neddylation_1_domain_containing_4	TUHR14TKB_KIDNEY	0.3	0.86	0.0721	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	CSNK2A1--RP5-850E9.3	5	0	CSNK2A1	1150	chr20:524316:-	RP5-850E9.3	26282	chr20:634964:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0601	0	CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-,RP5-850E9.3->chr20:627270-656444:-	TUHR14TKB_KIDNEY	1	1	0.0601	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0601	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TUHR14TKB_KIDNEY	1	1	0.0601	FALSE	499	1288	110	792	0	FALSE	ACH-000317
TUHR14TKB_KIDNEY	CTTN--MT-ND4L	4	0	CTTN	13476	chr11:70268802:+	MT-ND4L	24263	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TUHR14TKB_KIDNEY	1	1	0.0481	FALSE	0	0	0	1	0	FALSE	ACH-000317
TUHR14TKB_KIDNEY	HIF1A--RP11-47I22.3	3	2	HIF1A	6097	chr14:62188541:+	RP11-47I22.3	25003	chr14:62117680:+	ONLY_REF_SPLICE	YES	12	2	0.29	0.71	0.0361	0.0241	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	TUHR14TKB_KIDNEY	0.29	0.71	0.0602	TRUE	0	0	0	2	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	MT-ND6--MT-TE	3	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0.0241	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TUHR14TKB_KIDNEY	1	1	0.0602	FALSE	499	1288	110	792	0	FALSE	ACH-000317
TUHR14TKB_KIDNEY	ACTN4--ANAPC16	3	0	ACTN4	12324	chr19:39208601:+	ANAPC16	27581	chr10:73983643:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,ANAPC16->anaphase_promoting_complex_subunit_16,chr10:73975787-73995618:+	TUHR14TKB_KIDNEY	1	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	ALYREF--PLEC	3	0	ALYREF	4238	chr17:79846225:-	PLEC	37439	chr8:144995701:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	ALYREF->Aly/REF_export_factor,chr17:79845713-79849462:-,PLEC->chr8:144989321-145050902:-,plectin	TUHR14TKB_KIDNEY	1	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	MLF2--GALNT10	3	0	MLF2	5961	chr12:6859096:-	GALNT10	15549	chr5:153674374:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	MLF2->chr12:6857170-6876641:-,myeloid_leukemia_factor_2,GALNT10->chr5:153570290-153800544:+,polypeptide_N-acetylgalactosaminyltransferase_10	TUHR14TKB_KIDNEY	1	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TUHR14TKB_KIDNEY	1	1	0.0361	FALSE	499	1288	110	792	0	FALSE	ACH-000317
TUHR14TKB_KIDNEY	OCIAD2--COX17	3	0	OCIAD2	7471	chr4:48894832:-	COX17	12281	chr3:119396083:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	OCIAD2->OCIA_domain_containing_2,chr4:48887036-48908954:-,COX17->COX17_cytochrome_c_oxidase_copper_chaperone,chr3:119373360-119396301:-	TUHR14TKB_KIDNEY	1	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	PGLS--PARP3	3	0	PGLS	6894	chr19:17631921:+	PARP3	13248	chr3:51979538:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	PGLS->6-phosphogluconolactonase,chr19:17622438-17632097:+,PARP3->chr3:51976361-51982883:+,poly(ADP-ribose)_polymerase_family_member_3	TUHR14TKB_KIDNEY	1	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	PLEC--TUFT1	3	0	PLEC	33089	chr8:144993301:-	TUFT1	48296	chr1:151547386:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	PLEC->chr8:144989321-145050902:-,plectin,TUFT1->chr1:151512781-151556059:+,tuftelin_1	TUHR14TKB_KIDNEY	1	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	PLXNA1--TBC1D9B	3	0	PLXNA1	14688	chr3:126737344:+	TBC1D9B	33272	chr5:179331770:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	PLXNA1->chr3:126707437-126756235:+,plexin_A1,TBC1D9B->TBC1_domain_family_member_9B,chr5:179289066-179334859:-	TUHR14TKB_KIDNEY	1	1	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	CCT6A--AC091729.9	2	0	CCT6A	2991	chr7:56122196:+	AC091729.9	16640	chr7:1202598:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,AC091729.9->chr7:1200010-1204903:+	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	CLDN12--LEPR	2	0	CLDN12	4838	chr7:90034926:+	LEPR	26098	chr1:65890986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	CLDN12->chr7:90013035-90142716:+,claudin_12,LEPR->chr1:65886248-66107242:+,leptin_receptor	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	CUX1--KLC1	2	0	CUX1	1415	chr7:101459373:+	KLC1	78650	chr14:104166992:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	DIABLO--MYEF2	2	0	DIABLO	7311	chr12:122701035:-	MYEF2	24923	chr15:48446090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	DIABLO->chr12:122692210-122712081:-,diablo_IAP-binding_mitochondrial_protein,MYEF2->chr15:48431625-48470714:-,myelin_expression_factor_2	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	DNAJC25--UGCG	2	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	50	73	10	50	0	FALSE	ACH-000317
TUHR14TKB_KIDNEY	FAM19A5--CEBPZ	2	0	FAM19A5	5924	chr22:49103656:+	CEBPZ	14615	chr2:37456179:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	FAM19A5->chr22:48885272-49246724:+,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A5,CEBPZ->CCAAT/enhancer_binding_protein_zeta,chr2:37428755-37458856:-	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	FBXL17--PPIP5K2	2	0	FBXL17	5914	chr5:107684100:-	PPIP5K2	38376	chr5:102502883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	FBXL17->F-box_and_leucine-rich_repeat_protein_17,chr5:107194736-107717799:-,PPIP5K2->chr5:102455853-102548500:+,diphosphoinositol_pentakisphosphate_kinase_2	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	GPALPP1--GTF2F2	2	0	GPALPP1	10576	chr13:45602138:+	GTF2F2	30208	chr13:45857577:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	NEIGHBORS[86904],GPALPP1->GPALPP_motifs_containing_1,chr13:45563687-45607746:+,GTF2F2->chr13:45694650-45858237:+,general_transcription_factor_IIF_subunit_2	TUHR14TKB_KIDNEY	1	1	0.0241	FALSE	0	0	0	1	0	FALSE	ACH-000317
TUHR14TKB_KIDNEY	GUSBP1--CFL1	2	0	GUSBP1	1144	chr5:21342085:+	CFL1	25204	chr11:65623713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GUSBP1->chr5:21341942-21589481:+,glucuronidase,_beta_pseudogene_1,CFL1->chr11:65590493-65629497:-,cofilin_1	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	LITAF--TXNDC11	2	0	LITAF	6541	chr16:11680742:-	TXNDC11	29112	chr16:11792181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	LOCAL_REARRANGEMENT:-:[42699],LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor,TXNDC11->chr16:11772936-11836734:-,thioredoxin_domain_containing_11	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	MCMDC2--BPGM	2	0	MCMDC2	14556	chr8:67817570:+	BPGM	27092	chr7:134363605:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	MCMDC2->chr8:67782984-67834283:+,minichromosome_maintenance_domain_containing_2,BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	MTF2--TFRC	2	0	MTF2	1297	chr1:93545088:+	TFRC	21485	chr3:195803993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2,TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	MYO6--CCT8	2	0	MYO6	30898	chr6:76604977:+	CCT8	53326	chr21:30434877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	MYO6->chr6:76458909-76629254:+,myosin_VI,CCT8->chaperonin_containing_TCP1_subunit_8,chr21:30428126-30446118:-	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	OPTN--MYL12A	2	0	OPTN	9906	chr10:13164487:+	MYL12A	27277	chr18:3253231:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	OPTN->chr10:13141449-13180291:+,optineurin,MYL12A->chr18:3247479-3256234:+,myosin_light_chain_12A	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	RP11-568K15.1--PDHA1	2	0	RP11-568K15.1	4246	chr1:178003840:-	PDHA1	24934	chrX:19372609:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	RP11-568K15.1->chr1:177975271-178007085:-,PDHA1->chrX:19362011-19379823:+,pyruvate_dehydrogenase_(lipoamide)_alpha_1	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	SACS--MIPEP	2	0	SACS	1088	chr13:24007754:-	MIPEP	33697	chr13:24449048:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	SACS->chr13:23902965-24007841:-,sacsin_molecular_chaperone,MIPEP->chr13:24304328-24463558:-,mitochondrial_intermediate_peptidase	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	SRPK2--PUS7	2	0	SRPK2	2897	chr7:105029095:-	PUS7	36117	chr7:105135700:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	USP10--COTL1	2	0	USP10	7066	chr16:84767109:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	5	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	USP34--CCT4	2	0	USP34	1120	chr2:61697785:-	CCT4	79292	chr2:62110683:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Sarcomatoid=1,Skin=1,Kidney=1,Lymphoid=1},USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,CCT4->chaperonin_containing_TCP1_subunit_4,chr2:62095224-62115939:-	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	2	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	VMP1--TUBD1	2	0	VMP1	16307	chr17:57915758:+	TUBD1	32995	chr17:57944110:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_INVERSION:+:-:[17235],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,TUBD1->chr17:57936851-57970304:-,tubulin_delta_1	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	WDR36--HNRNPH1	2	0	WDR36	1903	chr5:110428316:+	HNRNPH1	38999	chr5:179043219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	WDR36->WD_repeat_domain_36,chr5:110427414-110466200:+,HNRNPH1->chr5:179041179-179061785:-,heterogeneous_nuclear_ribonucleoprotein_H1_(H)	TUHR14TKB_KIDNEY	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	RIC8B--RFX4	1	2	RIC8B	2879	chr12:107177822:+	RFX4	51838	chr12:107126702:+	ONLY_REF_SPLICE	YES	12	5	0.2	0.38	0.012	0.0241	LOCAL_REARRANGEMENT:+:[11792],RIC8B->RIC8_guanine_nucleotide_exchange_factor_B,chr12:107168373-107283090:+,RFX4->chr12:106976685-107156581:+,regulatory_factor_X4	TUHR14TKB_KIDNEY	0.2	0.38	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000317
TUHR14TKB_KIDNEY	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.012	0.012	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TUHR14TKB_KIDNEY	1	1	0.024	FALSE	515	4851	409	746	0	FALSE	ACH-000317
TUHR14TKB_KIDNEY	SHROOM3--RP11-328K4.1	1	1	SHROOM3	11918	chr4:77631440:+	RP11-328K4.1	39995	chr4:104374757:+	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.012	0.012	SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3,RP11-328K4.1->chr4:104177316-104374815:+	TUHR14TKB_KIDNEY	0.4	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000317
NCIH446_LUNG	PVT1--CASC8	200	219	PVT1	1202	chr8:128806980:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	126	15	0.77	0.97	2.1119	2.3125	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH446_LUNG	0.77	0.97	4.4244	TRUE	0	2	0	5	2	TRUE	ACH-000800
NCIH446_LUNG	PVT1--CASC8	99	263	PVT1	1202	chr8:128806980:+	CASC8	35426	chr8:128335399:-	ONLY_REF_SPLICE	YES	126	2	0.74	0.99	1.0454	2.7771	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH446_LUNG	0.74	0.99	3.8225	TRUE	0	0	0	5	0	TRUE	ACH-000800
NCIH446_LUNG	PVT1--LY6H	146	28	PVT1	1202	chr8:128806980:+	LY6H	29454	chr8:144241126:-	ONLY_REF_SPLICE	YES	126	8	0.58	0.96	1.5417	0.2957	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LY6H->chr8:144239331-144242128:-,lymphocyte_antigen_6_complex,_locus_H	NCIH446_LUNG	0.58	0.96	1.8374	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	TIMM23B--LINC00843	98	50	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0348	0.528	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH446_LUNG	0.99	1	1.5628	TRUE	508	994	45	981	0	FALSE	ACH-000800
NCIH446_LUNG	ZNF654--HMGB2	88	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9292	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH446_LUNG	1	1	0.9292	TRUE	0	0	0	518	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-120J1.1--RP11-89K10.1	77	29	RP11-120J1.1	1261	chr9:14317344:+	RP11-89K10.1	8112	chr8:127601437:+	ONLY_REF_SPLICE	YES	51	0	0.68	1	0.8131	0.3062	RP11-120J1.1->chr9:14317084-14357907:+,RP11-89K10.1->chr8:127570120-127725660:+	NCIH446_LUNG	0.68	1	1.1193	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	KLF3--KLHL5	70	36	KLF3	2362	chr4:38682303:+	KLHL5	18579	chr4:39077585:+	ONLY_REF_SPLICE	YES	15	21	0.88	0.83	0.7392	0.3801	KLF3->Kruppel-like_factor_3_(basic),Oncogene{Bushman},chr4:38665817-38702663:+,KLHL5->chr4:39046659-39128477:+,kelch_like_family_member_5	NCIH446_LUNG	0.83	0.88	1.1193	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RP1-34H18.1--NAV3	63	46	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.6652	0.4857	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH446_LUNG	1	1	1.1509	TRUE	254	575	65	124	0	FALSE	ACH-000800
NCIH446_LUNG	PVT1--CASC8	1	272	PVT1	2457	chr8:128808254:+	CASC8	35426	chr8:128335399:-	ONLY_REF_SPLICE	YES	109	2	0.71	0.99	0.0106	2.8721	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH446_LUNG	0.71	0.99	2.8827	TRUE	0	0	0	2	0	TRUE	ACH-000800
NCIH446_LUNG	TIMM23--RP11-464F9.1	67	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	208	5	0.26	0.94	0.7075	0.0739	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH446_LUNG	0.26	0.94	0.7814	TRUE	519	3926	326	965	0	FALSE	ACH-000800
NCIH446_LUNG	PVT1--CASC8	3	226	PVT1	2457	chr8:128808254:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	109	15	0.68	0.94	0.0317	2.3864	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH446_LUNG	0.68	0.94	2.4181	TRUE	0	1	0	4	0	TRUE	ACH-000800
NCIH446_LUNG	PVT1--CASC8	1	226	PVT1	2520	chr8:128808317:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	90	15	0.72	0.94	0.0106	2.3864	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH446_LUNG	0.72	0.94	2.397	TRUE	0	1	0	4	0	TRUE	ACH-000800
NCIH446_LUNG	OR51S1--TP53I11	44	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4646	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH446_LUNG	1	1	0.4646	TRUE	402	216	10	229	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-680G10.1--GSE1	40	15	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	44	1	0.56	0.4224	0.1584	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH446_LUNG	0.56	1	0.5808	TRUE	465	1949	224	605	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-408A13.2--NFIB	35	23	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	1212	1	0.05	0.3696	0.2429	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	NCIH446_LUNG	0.05	1	0.6125	TRUE	0	14	0	20	14	FALSE	ACH-000800
NCIH446_LUNG	MT-TA--MT-TC	31	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3273	0.0422	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH446_LUNG	1	1	0.3695	FALSE	462	80	0	856	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND5--MT-ATP8	31	2	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3230	14	0.01	0.7	0.3273	0.0211	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0.01	0.7	0.3484	FALSE	43	37	8	105	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-123O10.4--GRIP1	29	10	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	10	1	0.8	0.3062	0.1056	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH446_LUNG	0.8	1	0.4118	FALSE	416	2512	207	587	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-680G10.1--GSE1	26	17	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	29	1	0.6	0.2745	0.1795	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH446_LUNG	0.6	1	0.454	TRUE	458	1351	185	561	0	FALSE	ACH-000800
NCIH446_LUNG	ERBB4--AC079610.1	29	2	ERBB4	1393	chr2:213403173:-	AC079610.1	50458	chr2:213446132:-	ONLY_REF_SPLICE	YES	52	0	0.37	1	0.3062	0.0211	LOCAL_REARRANGEMENT:-:[42516],ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,AC079610.1->chr2:213446081-213886269:-	NCIH446_LUNG	0.37	1	0.3273	TRUE	0	2	0	3	2	TRUE	ACH-000800
NCIH446_LUNG	WI2-1896O14.1--RP11-353N4.1	24	15	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2534	0.1584	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	NCIH446_LUNG	1	1	0.4118	TRUE	361	258	24	38	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ND4L	7	81	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	34	0	0.72	1	0.0739	0.8553	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH446_LUNG	0.72	1	0.9292	FALSE	344	826	44	306	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ND4L	3	87	MT-ND4	1168	chrM:10927:+	MT-ND4L	5460	chrM:10551:+	INCL_NON_REF_SPLICE	YES	65	0	0.58	1	0.0317	0.9187	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH446_LUNG	0.58	1	0.9504	FALSE	344	826	44	306	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ND4L	3	87	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	81	0	0.53	1	0.0317	0.9187	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH446_LUNG	0.53	1	0.9504	FALSE	344	826	44	306	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND5--MT-ATP8	23	3	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	12	0	0.68	1	0.2429	0.0317	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0.68	1	0.2746	FALSE	43	37	8	105	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-89K10.1--RP11-120J1.1	22	4	RP11-89K10.1	2156	chr8:127601535:+	RP11-120J1.1	15701	chr9:14357151:+	ONLY_REF_SPLICE	YES	0	57	1	0.31	0.2323	0.0422	RP11-89K10.1->chr8:127570120-127725660:+,RP11-120J1.1->chr9:14317084-14357907:+	NCIH446_LUNG	0.31	1	0.2745	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RALA--YAE1D1	18	14	RALA	1343	chr7:39663424:+	YAE1D1	15182	chr7:39610105:+	ONLY_REF_SPLICE	YES	519	173	0.06	0.16	0.1901	0.1478	LOCAL_REARRANGEMENT:+:[13163],RALA->Oncogene{Bushman},chr7:39663082-39747723:+,v-ral_simian_leukemia_viral_oncogene_homolog_A_(ras_related),YAE1D1->Yae1_domain_containing_1,chr7:39605975-39649919:+	NCIH446_LUNG	0.06	0.16	0.3379	TRUE	0	2	0	1	1	TRUE	ACH-000800
NCIH446_LUNG	PLXDC1--TAF13	21	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2217	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH446_LUNG	1	1	0.2217	TRUE	7	10	0	216	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ND4L	3	69	MT-ND4	1789	chrM:11548:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	8997	0	0.01	1	0.0317	0.7286	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH446_LUNG	0.01	1	0.7603	FALSE	344	827	44	306	0	FALSE	ACH-000800
NCIH446_LUNG	APBA1--PTAR1	17	8	APBA1	1154	chr9:72287069:-	PTAR1	27014	chr9:72356774:-	ONLY_REF_SPLICE	YES	32	107	0.44	0.19	0.1795	0.0845	LOCAL_REARRANGEMENT:-:[37216],APBA1->amyloid_beta_precursor_protein_binding_family_A_member_1,chr9:72042446-72287222:-,PTAR1->chr9:72324438-72374875:-,protein_prenyltransferase_alpha_subunit_repeat_containing_1	NCIH446_LUNG	0.19	0.44	0.264	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RP11-123O10.4--RP11-81H14.2	17	8	RP11-123O10.4	1113	chr12:67462830:-	RP11-81H14.2	5304	chr12:68845332:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1795	0.0845	RP11-123O10.4->chr12:67285656-67462942:-,RP11-81H14.2->chr12:68726668-68845443:-	NCIH446_LUNG	1	1	0.264	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RP11-98J23.2--CDH12P3	16	11	RP11-98J23.2	5639	chr5:69216694:+	CDH12P3	10901	chr5:69428506:+	ONLY_REF_SPLICE	YES	48	0	0.36	1	0.1689	0.1162	RP11-98J23.2->chr5:69171098-69274436:+,CDH12P3->cadherin_12_pseudogene_3,chr5:69428506-69428800:+	NCIH446_LUNG	0.36	1	0.2851	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	MTDH--TRHR	18	2	MTDH	1709	chr8:98657115:+	TRHR	23749	chr8:110131277:+	ONLY_REF_SPLICE	YES	64	2	0.24	0.91	0.1901	0.0211	{Klijn_CCL:Lung=1},MTDH->chr8:98656407-98740998:+,metadherin,TRHR->Oncogene{Bushman},chr8:110098850-110131813:+,thyrotropin_releasing_hormone_receptor	NCIH446_LUNG	0.24	0.91	0.2112	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ND4L	4	54	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	20	0	0.74	1	0.0422	0.5702	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH446_LUNG	0.74	1	0.6124	FALSE	344	821	44	306	0	FALSE	ACH-000800
NCIH446_LUNG	PVT1--LY6H	10	28	PVT1	2457	chr8:128808254:+	LY6H	29454	chr8:144241126:-	ONLY_REF_SPLICE	YES	109	8	0.26	0.83	0.1056	0.2957	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LY6H->chr8:144239331-144242128:-,lymphocyte_antigen_6_complex,_locus_H	NCIH446_LUNG	0.26	0.83	0.4013	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	LDLRAD3--PRR5L	15	7	LDLRAD3	5673	chr11:36120011:+	PRR5L	17578	chr11:36317840:+	INCL_NON_REF_SPLICE	YES	102	0	0.18	1	0.1584	0.0739	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	NCIH446_LUNG	0.18	1	0.2323	FALSE	0	52	1	15	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	16	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1689	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	1	1	0.1689	FALSE	230	193	14	283	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ND4L	11	18	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	100	0	0.22	1	0.1162	0.1901	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH446_LUNG	0.22	1	0.3063	FALSE	344	826	44	306	0	FALSE	ACH-000800
NCIH446_LUNG	AL589743.1--RP11-536C10.17	15	1	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	23	0	0.41	1	0.1584	0.0106	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	NCIH446_LUNG	0.41	1	0.169	TRUE	0	33	0	45	33	FALSE	ACH-000800
NCIH446_LUNG	AP000525.9--LA16c-60G3.6	15	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	16	0	0.5	1	0.1584	0.0106	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH446_LUNG	0.5	1	0.169	TRUE	0	42	0	133	42	FALSE	ACH-000800
NCIH446_LUNG	CALM3--MT-ND4L	10	19	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2194	0	0.01	1	0.1056	0.2006	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH446_LUNG	0.01	1	0.3062	FALSE	1	1	0	107	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-408A13.2--NFIB	8	25	RP11-408A13.2	1096	chr9:14531945:-	NFIB	4303	chr9:14398807:-	INCL_NON_REF_SPLICE	YES	0	2	1	0.94	0.0845	0.264	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	NCIH446_LUNG	0.94	1	0.3485	TRUE	0	0	0	2	0	TRUE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ND4L	7	27	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	12113	0	0	1	0.0739	0.2851	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH446_LUNG	0	1	0.359	FALSE	328	800	43	304	0	FALSE	ACH-000800
NCIH446_LUNG	HELLS--TBC1D12	11	8	HELLS	1709	chr10:96306255:+	TBC1D12	38230	chr10:96253122:+	ONLY_REF_SPLICE	YES	163	15	0.1	0.56	0.1162	0.0845	LOCAL_REARRANGEMENT:+:[9860],HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific,TBC1D12->TBC1_domain_family_member_12,chr10:96162261-96295687:+	NCIH446_LUNG	0.1	0.56	0.2007	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ND4L	8	19	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1173	0	0.02	1	0.0845	0.2006	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH446_LUNG	0.02	1	0.2851	FALSE	344	827	44	306	0	FALSE	ACH-000800
NCIH446_LUNG	RNF152--RP11-879F14.1	12	3	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	40	0	0.27	1	0.1267	0.0317	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	NCIH446_LUNG	0.27	1	0.1584	FALSE	275	472	65	43	0	FALSE	ACH-000800
NCIH446_LUNG	APBA1--PTAR1	8	15	APBA1	1154	chr9:72287069:-	PTAR1	25844	chr9:72365866:-	ONLY_REF_SPLICE	YES	32	30	0.42	0.43	0.0845	0.1584	LOCAL_REARRANGEMENT:-:[37216],APBA1->amyloid_beta_precursor_protein_binding_family_A_member_1,chr9:72042446-72287222:-,PTAR1->chr9:72324438-72374875:-,protein_prenyltransferase_alpha_subunit_repeat_containing_1	NCIH446_LUNG	0.42	0.43	0.2429	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	KLF3--KLHL5	2	39	KLF3	2362	chr4:38682303:+	KLHL5	16340	chr4:39064179:+	ONLY_REF_SPLICE	YES	15	0	0.73	1	0.0211	0.4118	KLF3->Kruppel-like_factor_3_(basic),Oncogene{Bushman},chr4:38665817-38702663:+,KLHL5->chr4:39046659-39128477:+,kelch_like_family_member_5	NCIH446_LUNG	0.73	1	0.4329	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	PCAT1--RP11-382A18.2	11	3	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.1162	0.0317	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	NCIH446_LUNG	0.88	1	0.1479	TRUE	4	84	1	46	0	FALSE	ACH-000800
NCIH446_LUNG	PAM--LINC00492	10	5	PAM	20703	chr5:102286524:+	LINC00492	43003	chr5:101952900:+	ONLY_REF_SPLICE	YES	605	0	0.02	1	0.1056	0.0528	PAM->chr5:102089685-102366809:+,peptidylglycine_alpha-amidating_monooxygenase,LINC00492->chr5:101917072-101953293:+,long_intergenic_non-protein_coding_RNA_492	NCIH446_LUNG	0.02	1	0.1584	TRUE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	PVT1--LY6H	3	32	PVT1	1202	chr8:128806980:+	LY6H	28546	chr8:144242034:-	INCL_NON_REF_SPLICE	YES	126	0	0.22	1	0.0317	0.3379	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LY6H->chr8:144239331-144242128:-,lymphocyte_antigen_6_complex,_locus_H	NCIH446_LUNG	0.22	1	0.3696	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ND4L	4	26	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1677	0	0.02	1	0.0422	0.2745	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH446_LUNG	0.02	1	0.3167	FALSE	344	827	44	306	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-307P5.1--SASH1	7	14	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0739	0.1478	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NCIH446_LUNG	1	1	0.2217	TRUE	0	2	0	37	2	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	10	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1056	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	1	1	0.1056	FALSE	230	198	14	283	0	FALSE	ACH-000800
NCIH446_LUNG	NIN--TRIM9	10	0	NIN	1658	chr14:51297182:-	TRIM9	48969	chr14:51492078:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1056	0	NIN->Oncogene{Bushman},chr14:51186481-51297839:-,ninein,TRIM9->chr14:51441980-51562779:-,tripartite_motif_containing_9	NCIH446_LUNG	1	1	0.1056	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	UNK--ITGB4	9	3	UNK	1385	chr17:73781065:+	ITGB4	24741	chr17:73723275:+	ONLY_REF_SPLICE	YES	193	3	0.06	0.8	0.095	0.0317	LOCAL_REARRANGEMENT:+:[26782],UNK->chr17:73780681-73821886:+,unkempt_family_zinc_finger,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	NCIH446_LUNG	0.06	0.8	0.1267	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	KCNC2--CAPS2	8	6	KCNC2	3370	chr12:75601077:-	CAPS2	37231	chr12:75687147:-	ONLY_REF_SPLICE	YES	33	5	0.3	0.74	0.0845	0.0634	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[66111],KCNC2->chr12:75433857-75603648:-,potassium_voltage-gated_channel_subfamily_C_member_2,CAPS2->calcyphosine_2,chr12:75669759-75784708:-	NCIH446_LUNG	0.3	0.74	0.1479	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RP11-120D5.1--MID1	7	9	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	42	0.76	0.28	0.0739	0.095	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH446_LUNG	0.28	0.76	0.1689	FALSE	16	356	14	466	0	FALSE	ACH-000800
NCIH446_LUNG	PVT1--LY6H	2	28	PVT1	2520	chr8:128808317:+	LY6H	29454	chr8:144241126:-	ONLY_REF_SPLICE	YES	90	8	0.25	0.79	0.0211	0.2957	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LY6H->chr8:144239331-144242128:-,lymphocyte_antigen_6_complex,_locus_H	NCIH446_LUNG	0.25	0.79	0.3168	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	UNC5A--EIF4E1B	9	0	UNC5A	1344	chr5:176237821:+	EIF4E1B	18936	chr5:176069044:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.095	0	GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1},UNC5A->chr5:176237478-176307897:+,unc-5_netrin_receptor_A,EIF4E1B->chr5:176057683-176073642:+,eukaryotic_translation_initiation_factor_4E_family_member_1B	NCIH446_LUNG	1	1	0.095	TRUE	1	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RP11-141M1.3--STARD13	6	10	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	36	1	0.31	0.0634	0.1056	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NCIH446_LUNG	0.31	1	0.169	FALSE	141	264	50	91	0	FALSE	ACH-000800
NCIH446_LUNG	KCNC2--CAPS2	6	9	KCNC2	7507	chr12:75444937:-	CAPS2	37231	chr12:75687147:-	INCL_NON_REF_SPLICE	YES	9	5	0.62	0.75	0.0634	0.095	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[66111],KCNC2->chr12:75433857-75603648:-,potassium_voltage-gated_channel_subfamily_C_member_2,CAPS2->calcyphosine_2,chr12:75669759-75784708:-	NCIH446_LUNG	0.62	0.75	0.1584	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	PVT1--LY6H	1	29	PVT1	1202	chr8:128806980:+	LY6H	28896	chr8:144241684:-	ONLY_REF_SPLICE	YES	126	1	0.19	0.97	0.0106	0.3062	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LY6H->chr8:144239331-144242128:-,lymphocyte_antigen_6_complex,_locus_H	NCIH446_LUNG	0.19	0.97	0.3168	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	MT-TA--MT-TC	7	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0739	0.0422	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH446_LUNG	1	1	0.1161	FALSE	462	80	0	856	0	FALSE	ACH-000800
NCIH446_LUNG	NPM1P24--SET	8	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH446_LUNG	1	1	0.0845	TRUE	0	0	0	434	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-120D5.1--MID1	5	12	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	5	42	0.77	0.29	0.0528	0.1267	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH446_LUNG	0.29	0.77	0.1795	FALSE	0	9	0	55	0	FALSE	ACH-000800
NCIH446_LUNG	RP4-565E6.1--HYDIN	7	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0739	0.0422	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH446_LUNG	1	1	0.1161	TRUE	456	1387	91	133	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-120D5.1--MID1	6	7	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	42	0.65	0.24	0.0634	0.0739	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH446_LUNG	0.24	0.65	0.1373	FALSE	0	48	1	163	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	7	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15019	14	0	0.39	0.0739	0.0211	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0	0.39	0.095	FALSE	231	205	14	283	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-123O10.4--GRIP1	6	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	10	1	0.5	0.0634	0.0422	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH446_LUNG	0.5	1	0.1056	FALSE	93	270	15	244	0	FALSE	ACH-000800
NCIH446_LUNG	C15orf57--CBX3	5	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	70	86	0.15	0.12	0.0528	0.0739	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH446_LUNG	0.12	0.15	0.1267	TRUE	267	562	48	632	0	FALSE	ACH-000800
NCIH446_LUNG	MT-TA--MT-TC	5	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0.0634	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH446_LUNG	1	1	0.1162	FALSE	462	80	0	856	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	4	9	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17476	80	0	0.14	0.0422	0.095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0	0.14	0.1372	FALSE	231	217	16	283	0	FALSE	ACH-000800
NCIH446_LUNG	TYW1--ZNF92	5	5	TYW1	12596	chr7:66532390:+	ZNF92	24709	chr7:64852815:+	ONLY_REF_SPLICE	YES	35	99	0.22	0.09	0.0528	0.0528	TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog,ZNF92->chr7:64838712-64866038:+,zinc_finger_protein_92	NCIH446_LUNG	0.09	0.22	0.1056	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	5	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	17476	1920	0	0	0.0528	0.0422	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0	0	0.095	FALSE	231	217	16	283	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND5--MT-ATP8	6	0	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0634	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	1	1	0.0634	FALSE	43	37	8	105	0	FALSE	ACH-000800
NCIH446_LUNG	C15orf57--CBX3	4	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	68	88	0.14	0.11	0.0422	0.0739	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH446_LUNG	0.11	0.14	0.1161	TRUE	267	562	48	632	0	FALSE	ACH-000800
NCIH446_LUNG	KLF3--KLHL5	2	15	KLF3	2362	chr4:38682303:+	KLHL5	19762	chr4:39082723:+	ONLY_REF_SPLICE	YES	15	61	0.53	0.22	0.0211	0.1584	KLF3->Kruppel-like_factor_3_(basic),Oncogene{Bushman},chr4:38665817-38702663:+,KLHL5->chr4:39046659-39128477:+,kelch_like_family_member_5	NCIH446_LUNG	0.22	0.53	0.1795	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	4	7	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	18556	0	0	1	0.0422	0.0739	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0	1	0.1161	FALSE	231	217	16	283	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	4	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	18287	14	0	0.44	0.0422	0.0739	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0	0.44	0.1161	FALSE	231	217	16	283	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-408A13.2--FAM84B	5	3	RP11-408A13.2	1096	chr9:14531945:-	FAM84B	9018	chr8:127565748:-	INCL_NON_REF_SPLICE	YES	0	1246	1	0.01	0.0528	0.0317	RP11-408A13.2->chr9:14531914-14532040:-,FAM84B->chr8:127564687-127570638:-,family_with_sequence_similarity_84_member_B	NCIH446_LUNG	0.01	1	0.0845	FALSE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	CDH12--MYO10	5	2	CDH12	16088	chr5:21842270:-	MYO10	32772	chr5:16818276:-	ONLY_REF_SPLICE	YES	131	144	0.05	0.05	0.0528	0.0211	CDH12->cadherin_12,chr5:21750782-22853731:-,MYO10->chr5:16665395-16936372:-,myosin_X	NCIH446_LUNG	0.05	0.05	0.0739	TRUE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	1776	chrM:11535:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	NO	18234	0	0	1	0.0317	0.1056	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0	1	0.1373	FALSE	231	217	16	283	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	4	6	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	18610	0	0	1	0.0422	0.0634	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0	1	0.1056	FALSE	231	217	16	283	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	4	6	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	18684	0	0	1	0.0422	0.0634	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0	1	0.1056	FALSE	231	217	16	283	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-123O10.4--RP11-81H14.2	5	2	RP11-123O10.4	1113	chr12:67462830:-	RP11-81H14.2	6565	chr12:68835921:-	ONLY_REF_SPLICE	YES	0	7	1	0.5	0.0528	0.0211	RP11-123O10.4->chr12:67285656-67462942:-,RP11-81H14.2->chr12:68726668-68845443:-	NCIH446_LUNG	0.5	1	0.0739	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RP11-444D3.1--SOX5	5	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	33	1	0.17	0.0528	0.0211	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH446_LUNG	0.17	1	0.0739	TRUE	477	1352	189	275	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	3	9	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	17842	0	0	1	0.0317	0.095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0	1	0.1267	FALSE	231	217	16	283	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ND4L	3	9	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	28	0	0.3	1	0.0317	0.095	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH446_LUNG	0.3	1	0.1267	FALSE	344	826	44	306	0	FALSE	ACH-000800
NCIH446_LUNG	MT-TA--MT-TC	5	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0528	0.0106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH446_LUNG	1	1	0.0634	FALSE	462	80	0	856	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	18191	1542	0	0.01	0.0317	0.0739	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0	0.01	0.1056	FALSE	231	217	16	283	0	FALSE	ACH-000800
NCIH446_LUNG	CCDC122--ENOX1	4	2	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	37	28	0.14	0.18	0.0422	0.0211	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	NCIH446_LUNG	0.14	0.18	0.0633	FALSE	39	52	2	34	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	19357	0	0	1	0.0317	0.0634	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0	1	0.0951	FALSE	231	217	16	283	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-141M1.3--STARD13	2	10	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	36	0.92	0.25	0.0211	0.1056	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NCIH446_LUNG	0.25	0.92	0.1267	FALSE	49	120	16	70	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-408A13.2--NFIB	4	2	RP11-408A13.2	1096	chr9:14531945:-	NFIB	13366	chr9:14179779:-	INCL_NON_REF_SPLICE	YES	0	1397	1	0	0.0422	0.0211	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	NCIH446_LUNG	0	1	0.0633	FALSE	0	0	0	2	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19252	80	0	0.09	0.0317	0.0528	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0	0.09	0.0845	FALSE	231	217	16	283	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-141M1.3--STARD13	3	5	RP11-141M1.3	5599	chr13:34098375:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	36	0.73	0.18	0.0317	0.0528	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NCIH446_LUNG	0.18	0.73	0.0845	FALSE	9	22	2	16	0	FALSE	ACH-000800
NCIH446_LUNG	ARHGEF28--ENC1	4	0	ARHGEF28	1165	chr5:72922147:+	ENC1	58059	chr5:73932323:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0422	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Frontal_Cortex_(BA9)=1},ARHGEF28->Rho_guanine_nucleotide_exchange_factor_28,chr5:72921983-73237818:+,ENC1->Oncogene{Bushman},chr5:73923234-73937249:-,ectodermal-neural_cortex_1	NCIH446_LUNG	1	1	0.0422	TRUE	0	0	0	2	0	TRUE	ACH-000800
NCIH446_LUNG	CALM3--MT-ATP8	4	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	1	1	0.0422	FALSE	12	0	0	26	0	FALSE	ACH-000800
NCIH446_LUNG	EIF1--RPL5	4	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	NCIH446_LUNG	1	1	0.0422	TRUE	0	0	0	39	0	FALSE	ACH-000800
NCIH446_LUNG	KIAA1456--LINC00681	2	8	KIAA1456	1325	chr8:12803475:+	LINC00681	27109	chr8:12675472:+	ONLY_REF_SPLICE	YES	58	0	0.15	1	0.0211	0.0845	KIAA1456->KIAA1456,chr8:12803151-12889012:+,LINC00681->chr8:12651752-12675800:+,long_intergenic_non-protein_coding_RNA_681	NCIH446_LUNG	0.15	1	0.1056	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17021	80	0	0.08	0.0317	0.0422	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0	0.08	0.0739	FALSE	231	205	14	283	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	1	1	0.0422	FALSE	231	204	14	283	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	19269	2	0	0.78	0.0317	0.0422	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0	0.78	0.0739	FALSE	231	216	16	283	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	1	1	0.0422	FALSE	231	205	14	283	0	FALSE	ACH-000800
NCIH446_LUNG	KANSL1--LRRC37A	3	3	KANSL1	7536	chr17:44248221:-	LRRC37A	37753	chr17:44377160:+	ONLY_REF_SPLICE	YES	60	7	0.09	0.46	0.0317	0.0317	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	NCIH446_LUNG	0.09	0.46	0.0634	TRUE	5	10	0	8	0	FALSE	ACH-000800
NCIH446_LUNG	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0.0317	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH446_LUNG	1	1	0.0634	FALSE	462	80	0	856	0	FALSE	ACH-000800
NCIH446_LUNG	LY6H--EEF1A1	3	2	LY6H	2843	chr8:144240286:-	EEF1A1	11321	chr6:74228452:-	INCL_NON_REF_SPLICE	YES	1025	17615	0	0	0.0317	0.0211	LY6H->chr8:144239331-144242128:-,lymphocyte_antigen_6_complex,_locus_H,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	NCIH446_LUNG	0	0	0.0528	FALSE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	LY6H--EEF1A1	3	2	LY6H	2829	chr8:144240300:-	EEF1A1	11297	chr6:74228476:-	INCL_NON_REF_SPLICE	YES	1014	18737	0	0	0.0317	0.0211	LY6H->chr8:144239331-144242128:-,lymphocyte_antigen_6_complex,_locus_H,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	NCIH446_LUNG	0	0	0.0528	FALSE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ND4L	3	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0.0211	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH446_LUNG	1	1	0.0528	FALSE	344	821	44	306	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND5--MT-ATP8	3	2	MT-ND5	2588	chrM:13924:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2626	14	0	0.26	0.0317	0.0211	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0	0.26	0.0528	FALSE	43	37	8	105	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND5--MT-ATP8	3	2	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	2215	2	0	0.71	0.0317	0.0211	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	0	0.71	0.0528	FALSE	43	37	8	105	0	FALSE	ACH-000800
NCIH446_LUNG	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0.0211	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH446_LUNG	1	1	0.0528	FALSE	462	80	0	856	0	FALSE	ACH-000800
NCIH446_LUNG	TYW1--ZNF92	3	2	TYW1	12596	chr7:66532390:+	ZNF92	26709	chr7:64863254:+	ONLY_REF_SPLICE	YES	35	98	0.12	0.05	0.0317	0.0211	TYW1->chr7:66460160-66704501:+,tRNA-yW_synthesizing_protein_1_homolog,ZNF92->chr7:64838712-64866038:+,zinc_finger_protein_92	NCIH446_LUNG	0.05	0.12	0.0528	TRUE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-120D5.1--MID1	1	9	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	5	16	0.67	0.38	0.0106	0.095	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH446_LUNG	0.38	0.67	0.1056	FALSE	0	23	1	67	0	FALSE	ACH-000800
NCIH446_LUNG	CDKAL1--E2F3	3	0	CDKAL1	5319	chr6:20649608:+	E2F3	24841	chr6:20480077:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0317	0	LOCAL_REARRANGEMENT:+:[40747],CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+,E2F3->E2F_transcription_factor_3,Oncogene{Bushman},chr6:20402398-20493941:+	NCIH446_LUNG	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	LDLRAD3--PRR5L	2	4	LDLRAD3	5673	chr11:36120011:+	PRR5L	20830	chr11:36350668:+	ONLY_REF_SPLICE	YES	102	2	0.06	0.75	0.0211	0.0422	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	NCIH446_LUNG	0.06	0.75	0.0633	FALSE	2	24	3	12	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5571	chrM:8558:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	1	1	0.0317	FALSE	231	204	14	283	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH446_LUNG	1	1	0.0317	FALSE	231	204	14	283	0	FALSE	ACH-000800
NCIH446_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH446_LUNG	1	1	0.0317	FALSE	344	821	44	306	0	FALSE	ACH-000800
NCIH446_LUNG	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH446_LUNG	1	1	0.0317	TRUE	0	0	0	434	0	FALSE	ACH-000800
NCIH446_LUNG	POGZ--SEMA6C	2	4	POGZ	7500	chr1:151403142:-	SEMA6C	28841	chr1:151116910:-	ONLY_REF_SPLICE	YES	113	51	0.05	0.11	0.0211	0.0422	POGZ->chr1:151375200-151431941:-,pogo_transposable_element_with_ZNF_domain,SEMA6C->chr1:151104161-151119104:-,semaphorin_6C	NCIH446_LUNG	0.05	0.11	0.0633	TRUE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH446_LUNG	1	1	0.0317	TRUE	22	156	2	142	0	FALSE	ACH-000800
NCIH446_LUNG	UNC5A--EIF4E1B	3	0	UNC5A	1344	chr5:176237821:+	EIF4E1B	17355	chr5:176057856:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0317	0	GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1},UNC5A->chr5:176237478-176307897:+,unc-5_netrin_receptor_A,EIF4E1B->chr5:176057683-176073642:+,eukaryotic_translation_initiation_factor_4E_family_member_1B	NCIH446_LUNG	1	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RNF152--RP11-879F14.1	2	3	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	YES	40	0	0.11	1	0.0211	0.0317	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	NCIH446_LUNG	0.11	1	0.0528	FALSE	119	124	24	18	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-141M1.3--STARD13	1	6	RP11-141M1.3	8903	chr13:34013828:-	STARD13	26750	chr13:33716510:-	ONLY_REF_SPLICE	YES	0	40	1	0.15	0.0106	0.0634	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NCIH446_LUNG	0.15	1	0.074	FALSE	1	5	1	7	0	FALSE	ACH-000800
NCIH446_LUNG	SOCS2--CRADD	2	2	SOCS2	6360	chr12:93968949:+	CRADD	13792	chr12:94072545:+	ONLY_REF_SPLICE	YES	859	4	0	0.5	0.0211	0.0211	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[93888],SOCS2->Oncogene{Bushman},chr12:93963590-93977263:+,suppressor_of_cytokine_signaling_2,CRADD->CASP2_and_RIPK1_domain_containing_adaptor_with_death_domain,chr12:94071151-94288616:+	NCIH446_LUNG	0	0.5	0.0422	FALSE	17	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	ARHGEF12--POU2F3	2	1	ARHGEF12	4686	chr11:120278532:+	POU2F3	60912	chr11:120168974:+	ONLY_REF_SPLICE	YES	153	0	0.02	1	0.0211	0.0106	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[17134],ARHGEF12->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_12,chr11:120207787-120360645:+,POU2F3->POU_class_2_homeobox_3,chr11:120107349-120190653:+	NCIH446_LUNG	0.02	1	0.0317	TRUE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	CACNA1C--ADIPOR2	2	1	CACNA1C	2730	chr12:2162777:+	ADIPOR2	71723	chr12:1863424:+	ONLY_REF_SPLICE	YES	23	89	0.12	0.03	0.0211	0.0106	CACNA1C->calcium_voltage-gated_channel_subunit_alpha1_C,chr12:2079952-2802108:+,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	NCIH446_LUNG	0.03	0.12	0.0317	TRUE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-123O10.4--RP11-81H14.2	2	1	RP11-123O10.4	1113	chr12:67462830:-	RP11-81H14.2	15123	chr12:68727444:-	ONLY_REF_SPLICE	YES	0	6	1	0.33	0.0211	0.0106	RP11-123O10.4->chr12:67285656-67462942:-,RP11-81H14.2->chr12:68726668-68845443:-	NCIH446_LUNG	0.33	1	0.0317	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RP11-141M1.3--STARD13	1	5	RP11-141M1.3	6791	chr13:34094095:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	36	1	0.14	0.0106	0.0528	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NCIH446_LUNG	0.14	1	0.0634	FALSE	1	2	1	7	0	FALSE	ACH-000800
NCIH446_LUNG	BOC--GALNT13	2	0	BOC	3779	chr3:112935121:+	GALNT13	29218	chr2:154757449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	BOC->BOC_cell_adhesion_associated,_oncogene_regulated,chr3:112929850-113006303:+,GALNT13->chr2:154728426-155310361:+,polypeptide_N-acetylgalactosaminyltransferase_13	NCIH446_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	NCIH446_LUNG	1	1	0.0211	TRUE	0	0	0	11	0	TRUE	ACH-000800
NCIH446_LUNG	GUSBP1--MXI1	2	0	GUSBP1	4568	chr5:21461975:+	MXI1	24938	chr10:111987947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GUSBP1->chr5:21341942-21589481:+,glucuronidase,_beta_pseudogene_1,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	NCIH446_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	KIAA1958--SNX30	2	0	KIAA1958	3467	chr9:115337531:+	SNX30	22440	chr9:115567056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	{Klijn_CCL:Lung=1,Colo-Rectal=1},NEIGHBORS[81441],KIAA1958->KIAA1958,chr9:115249127-115431677:+,SNX30->chr9:115513118-115643951:+,sorting_nexin_family_member_30	NCIH446_LUNG	1	1	0.0211	FALSE	5	9	0	7	0	FALSE	ACH-000800
NCIH446_LUNG	KLF3--KLHL5	1	4	KLF3	1266	chr4:38666082:+	KLHL5	19762	chr4:39082723:+	ONLY_REF_SPLICE	YES	12	61	0.29	0.08	0.0106	0.0422	KLF3->Kruppel-like_factor_3_(basic),Oncogene{Bushman},chr4:38665817-38702663:+,KLHL5->chr4:39046659-39128477:+,kelch_like_family_member_5	NCIH446_LUNG	0.08	0.29	0.0528	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	MANBA--NFKB1	2	0	MANBA	1277	chr4:103681875:-	NFKB1	37744	chr4:103488144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_INVERSION:-:+:[14201],MANBA->chr4:103552660-103682151:-,mannosidase_beta,NFKB1->Oncogene{Bushman},chr4:103422486-103538459:+,nuclear_factor_kappa_B_subunit_1	NCIH446_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	PPP1R12C--CNN2	2	0	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	NCIH446_LUNG	1	1	0.0211	TRUE	35	34	3	30	0	FALSE	ACH-000800
NCIH446_LUNG	RCC1--UBB	2	0	RCC1	2175	chr1:28834672:+	UBB	19982	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,UBB->chr17:16284112-16286059:+,ubiquitin_B	NCIH446_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	RP11-51F16.8--VIM	2	0	RP11-51F16.8	8921	chr17:61783995:-	VIM	20439	chr10:17277168:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	RP11-51F16.8->chr17:61780205-61829457:-,VIM->chr10:17270258-17279592:+,vimentin	NCIH446_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	TMTC2--CORO1C	2	0	TMTC2	1790	chr12:83081448:+	CORO1C	28437	chr12:109095099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	TMTC2->chr12:83080659-83528649:+,transmembrane_and_tetratricopeptide_repeat_containing_2,CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C	NCIH446_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000800
NCIH446_LUNG	YEATS4--LYZ	2	0	YEATS4	7243	chr12:69764755:+	LYZ	13098	chr12:69743888:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_REARRANGEMENT:+:[5469],YEATS4->YEATS_domain_containing_4,chr12:69753483-69784576:+,LYZ->chr12:69742121-69748014:+,lysozyme	NCIH446_LUNG	1	1	0.0211	TRUE	0	7	0	3	6	TRUE	ACH-000800
NCIH446_LUNG	CTC-786C10.1--GSE1	1	2	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	44	1	0.06	0.0106	0.0211	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH446_LUNG	0.06	1	0.0317	TRUE	2	3	0	21	0	FALSE	ACH-000800
NCIH446_LUNG	KANSL1--LRRC37A	1	2	KANSL1	8599	chr17:44230270:-	LRRC37A	38825	chr17:44380004:+	ONLY_REF_SPLICE	YES	67	8	0.04	0.27	0.0106	0.0211	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	NCIH446_LUNG	0.04	0.27	0.0317	TRUE	0	1	0	1	1	FALSE	ACH-000800
NCIH446_LUNG	KANSL1--LRRC37A	1	2	KANSL1	8599	chr17:44230270:-	LRRC37A	41698	chr17:44399688:+	ONLY_REF_SPLICE	YES	67	17	0.04	0.15	0.0106	0.0211	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	NCIH446_LUNG	0.04	0.15	0.0317	TRUE	2	2	0	6	0	FALSE	ACH-000800
NCIH446_LUNG	NLGN1--NAALADL2	1	2	NLGN1	11485	chr3:173525622:+	NAALADL2	42973	chr3:174814580:+	ONLY_REF_SPLICE	YES	86	1	0.03	0.75	0.0106	0.0211	NLGN1->chr3:173114074-174004434:+,neuroligin_1,NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+	NCIH446_LUNG	0.03	0.75	0.0317	TRUE	0	0	0	2	0	FALSE	ACH-000800
NCIH446_LUNG	RP4-565E6.1--HYDIN	1	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	NO	0	2	1	0.6	0.0106	0.0211	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH446_LUNG	0.6	1	0.0317	TRUE	84	87	4	41	0	FALSE	ACH-000800
NCIH446_LUNG	WDPCP--UGP2	1	2	WDPCP	6186	chr2:63815331:-	UGP2	46773	chr2:64083440:+	ONLY_REF_SPLICE	YES	29	448	0.09	0.01	0.0106	0.0211	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_INVERSION:-:+:[13097],WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-,UGP2->UDP-glucose_pyrophosphorylase_2,chr2:64068074-64118696:+	NCIH446_LUNG	0.01	0.09	0.0317	FALSE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	BICD1--FGD4	1	1	BICD1	12831	chr12:32490640:+	FGD4	33337	chr12:32717071:+	ONLY_REF_SPLICE	NO	147	127	0.01	0.02	0.0106	0.0106	NEIGHBORS[15896],BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+	NCIH446_LUNG	0.01	0.02	0.0212	FALSE	0	0	0	2	0	FALSE	ACH-000800
NCIH446_LUNG	CAPZA2--UBB	1	1	CAPZA2	3371	chr7:116502704:+	UBB	26491	chr17:16285216:+	ONLY_REF_SPLICE	NO	119	337	0.02	0.01	0.0106	0.0106	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	NCIH446_LUNG	0.01	0.02	0.0212	FALSE	0	0	0	5	0	FALSE	ACH-000800
NCIH446_LUNG	COPS7B--PPA2	1	1	COPS7B	3516	chr2:232653442:+	PPA2	22764	chr4:106370560:-	ONLY_REF_SPLICE	YES	296	374	0.01	0.01	0.0106	0.0106	COPS7B->COP9_signalosome_subunit_7B,chr2:232646381-232673963:+,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	NCIH446_LUNG	0.01	0.01	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	EPHA7--SEC63	1	1	EPHA7	7377	chr6:94066435:-	SEC63	43231	chr6:108218935:-	ONLY_REF_SPLICE	NO	105	241	0.02	0.01	0.0106	0.0106	EPHA7->ArcherDX_panel,EPH_receptor_A7,FoundationOne_panel,Oncogene{Bushman},chr6:93949738-94129265:-,SEC63->SEC63_homolog,_protein_translocation_regulator,chr6:108188960-108279393:-	NCIH446_LUNG	0.01	0.02	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	EPS15--SRSF11	1	1	EPS15	30922	chr1:51829538:-	SRSF11	40036	chr1:70687298:+	ONLY_REF_SPLICE	YES	130	234	0.02	0.01	0.0106	0.0106	EPS15->Oncogene{Bushman},chr1:51819935-51985000:-,epidermal_growth_factor_receptor_pathway_substrate_15,SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11	NCIH446_LUNG	0.01	0.02	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	GALNT7--CCNI	1	1	GALNT7	1209	chr4:174090112:+	CCNI	23783	chr4:77987558:-	ONLY_REF_SPLICE	YES	74	224	0.03	0.01	0.0106	0.0106	GALNT7->chr4:174089904-174245118:+,polypeptide_N-acetylgalactosaminyltransferase_7,CCNI->chr4:77968311-77997158:-,cyclin_I	NCIH446_LUNG	0.01	0.03	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	GTDC1--ARHGAP15	1	1	GTDC1	7509	chr2:144993243:-	ARHGAP15	54223	chr2:144193170:+	ONLY_REF_SPLICE	YES	45	134	0.04	0.01	0.0106	0.0106	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.03%,GTEx_FI:{Nerve=[count:4=pct:2.4],Blood=[count:4=pct:2.3],Heart=[count:1=pct:0.4],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=27;pct=0.31%;dist=Nerve_-_Tibial=7,Whole_Blood=5,Lung=3,Artery_-_Aorta=3,Heart_-_Left_Ventricle=2,Spleen=2,Artery_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Atrial_Appendage=1},GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	NCIH446_LUNG	0.01	0.04	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	LINC01036--LINC01037	1	1	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0106	0.0106	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	NCIH446_LUNG	1	1	0.0212	FALSE	0	26	0	50	0	FALSE	ACH-000800
NCIH446_LUNG	LINC01036--LINC01037	1	1	LINC01036	2179	chr1:187272671:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0106	0.0106	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	NCIH446_LUNG	1	1	0.0212	FALSE	0	1	0	5	0	FALSE	ACH-000800
NCIH446_LUNG	NRXN1--ASB3	1	1	NRXN1	4249	chr2:51254640:-	ASB3	61306	chr2:53943880:-	ONLY_REF_SPLICE	YES	32	109	0.06	0.02	0.0106	0.0106	NRXN1->chr2:50145643-51259674:-,neurexin_1,ASB3->ankyrin_repeat_and_SOCS_box_containing_3,chr2:53897430-54087297:-	NCIH446_LUNG	0.02	0.06	0.0212	TRUE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-307P5.1--SASH1	1	1	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0106	0.0106	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NCIH446_LUNG	0.67	1	0.0212	TRUE	0	0	0	16	0	TRUE	ACH-000800
NCIH446_LUNG	RP11-390F4.6--GLDC	1	1	RP11-390F4.6	1130	chr9:6646085:+	GLDC	19273	chr9:6587283:-	ONLY_REF_SPLICE	NO	60	323	0.03	0.01	0.0106	0.0106	LOCAL_INVERSION:+:-:[306],RP11-390F4.6->chr9:6645956-6670635:+,GLDC->chr9:6532464-6645650:-,glycine_decarboxylase	NCIH446_LUNG	0.01	0.03	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	33	1	0.06	0.0106	0.0106	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH446_LUNG	0.06	1	0.0212	TRUE	274	363	69	150	0	FALSE	ACH-000800
NCIH446_LUNG	SPOCK3--CPE	1	1	SPOCK3	1812	chr4:168155136:-	CPE	28858	chr4:166385542:+	ONLY_REF_SPLICE	YES	536	1687	0	0	0.0106	0.0106	SPOCK3->chr4:167654535-168155947:-,sparc/osteonectin,_cwcv_and_kazal-like_domains_proteoglycan_(testican)_3,CPE->carboxypeptidase_E,chr4:166282346-166419472:+	NCIH446_LUNG	0	0	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	SPOCK3--SH3RF1	1	1	SPOCK3	1812	chr4:168155136:-	SH3RF1	26020	chr4:170077830:-	ONLY_REF_SPLICE	YES	536	49	0	0.04	0.0106	0.0106	SPOCK3->chr4:167654535-168155947:-,sparc/osteonectin,_cwcv_and_kazal-like_domains_proteoglycan_(testican)_3,SH3RF1->SH3_domain_containing_ring_finger_1,chr4:170015407-170192256:-	NCIH446_LUNG	0	0.04	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	SPOCK3--SH3RF1	1	1	SPOCK3	1812	chr4:168155136:-	SH3RF1	28220	chr4:170057771:-	ONLY_REF_SPLICE	NO	536	69	0	0.03	0.0106	0.0106	SPOCK3->chr4:167654535-168155947:-,sparc/osteonectin,_cwcv_and_kazal-like_domains_proteoglycan_(testican)_3,SH3RF1->SH3_domain_containing_ring_finger_1,chr4:170015407-170192256:-	NCIH446_LUNG	0	0.03	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000800
NCIH446_LUNG	UHRF1BP1L--ANKS1B	1	1	UHRF1BP1L	25106	chr12:100441308:-	ANKS1B	33688	chr12:100219167:-	ONLY_REF_SPLICE	YES	91	64	0.02	0.03	0.0106	0.0106	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[43801],UHRF1BP1L->UHRF1_binding_protein_1_like,chr12:100422233-100536626:-,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	NCIH446_LUNG	0.02	0.03	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000800
OVSAHO_OVARY	PXMP4--RBM39	174	57	PXMP4	1225	chr20:32307901:-	RBM39	16813	chr20:34320057:-	ONLY_REF_SPLICE	YES	48	954	0.83	0.19	2.1116	0.6917	{Klijn_CCL:Ovary=1},PXMP4->chr20:32294512-32308125:-,peroxisomal_membrane_protein_4,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	OVSAHO_OVARY	0.19	0.83	2.8033	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ASCC1--MICU1	103	54	ASCC1	10097	chr10:73956569:-	MICU1	41007	chr10:74183129:-	ONLY_REF_SPLICE	YES	139	126	0.53	0.55	1.25	0.6553	YOSHIHARA_TCGA_num_samples[BRCA:3],{Klijn_CCL:Ovary=1,Lung=1},ASCC1->activating_signal_cointegrator_1_complex_subunit_1,chr10:73856278-73976892:-,MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1	OVSAHO_OVARY	0.53	0.55	1.9053	TRUE	0	1	0	1	1	TRUE	ACH-000409
OVSAHO_OVARY	AP000525.9--LA16c-60G3.6	111	9	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	18	0	0.87	1	1.3471	0.1092	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	OVSAHO_OVARY	0.87	1	1.4563	TRUE	0	42	0	133	42	FALSE	ACH-000409
OVSAHO_OVARY	AL589743.1--RP11-536C10.17	110	10	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	27	0	0.82	1	1.3349	0.1214	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	OVSAHO_OVARY	0.82	1	1.4563	TRUE	0	33	0	45	33	FALSE	ACH-000409
OVSAHO_OVARY	ELL--DDX1	99	47	ELL	1207	chr19:18632731:-	DDX1	19571	chr2:15731778:+	ONLY_REF_SPLICE	YES	53	2	0.73	0.99	1.2014	0.5704	ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	OVSAHO_OVARY	0.73	0.99	1.7718	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	CTD-2314B22.3--RP11-536C10.19	97	9	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	24	0	0.82	1	1.1772	0.1092	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	OVSAHO_OVARY	0.82	1	1.2864	TRUE	0	2	0	9	2	TRUE	ACH-000409
OVSAHO_OVARY	TMEM120B--WDR66	63	38	TMEM120B	1213	chr12:122150870:+	WDR66	30007	chr12:122380440:+	ONLY_REF_SPLICE	YES	19	2	0.84	0.98	0.7646	0.4612	{Klijn_CCL:Ovary=1},TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B,WDR66->WD_repeat_domain_66,chr12:122355768-122441833:+	OVSAHO_OVARY	0.84	0.98	1.2258	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	TIMM23B--LINC00843	66	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.801	0.1578	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OVSAHO_OVARY	1	1	0.9588	TRUE	508	994	45	981	0	FALSE	ACH-000409
OVSAHO_OVARY	PLEC--TONSL	57	25	PLEC	25438	chr8:145000952:-	TONSL	53188	chr8:145655920:-	ONLY_REF_SPLICE	YES	55	77	0.6	0.52	0.6917	0.3034	PLEC->chr8:144989321-145050902:-,plectin,TONSL->chr8:145654165-145669827:-,tonsoku-like,_DNA_repair_protein	OVSAHO_OVARY	0.52	0.6	0.9951	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ELL--RP11-420K14.8	59	13	ELL	1207	chr19:18632731:-	RP11-420K14.8	21660	chr19:21951929:-	ONLY_REF_SPLICE	YES	53	0	0.58	1	0.716	0.1578	ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,RP11-420K14.8->chr19:21951574-21976662:-	OVSAHO_OVARY	0.58	1	0.8738	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ECT2--FNDC3B	50	19	ECT2	20761	chr3:172523659:+	FNDC3B	70390	chr3:172114954:+	ONLY_REF_SPLICE	YES	182	43	0.27	0.62	0.6068	0.2306	ECT2->Oncogene{Bushman},chr3:172468472-172539264:+,epithelial_cell_transforming_2,FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B	OVSAHO_OVARY	0.27	0.62	0.8374	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MKL1--GNB1L	40	26	MKL1	3549	chr22:40948110:-	GNB1L	24759	chr22:19808898:-	ONLY_REF_SPLICE	YES	1	15	0.99	0.81	0.4854	0.3155	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	OVSAHO_OVARY	0.81	0.99	0.8009	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	AP003900.6--AP000345.1	45	2	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	2	0	0.96	1	0.5461	0.0243	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	OVSAHO_OVARY	0.96	1	0.5704	TRUE	4	17	0	31	0	FALSE	ACH-000409
OVSAHO_OVARY	PIGU--FER1L4	38	20	PIGU	14187	chr20:33162908:-	FER1L4	39128	chr20:34153143:-	ONLY_REF_SPLICE	YES	376	0	0.13	1	0.4612	0.2427	PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,FER1L4->chr20:34146507-34195484:-,fer-1_like_family_member_4,_pseudogene	OVSAHO_OVARY	0.13	1	0.7039	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	RNF8--RAB44	40	10	RNF8	3593	chr6:37328350:+	RAB44	28970	chr6:36696477:+	ONLY_REF_SPLICE	YES	56	5	0.47	0.91	0.4854	0.1214	RNF8->chr6:37321748-37362514:+,ring_finger_protein_8,RAB44->RAB44,_member_RAS_oncogene_family,chr6:36683256-36699870:+	OVSAHO_OVARY	0.47	0.91	0.6068	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MT-TA--MT-TC	41	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4976	0.0607	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVSAHO_OVARY	1	1	0.5583	FALSE	462	80	0	856	0	FALSE	ACH-000409
OVSAHO_OVARY	TIMM23--RP11-464F9.1	39	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	241	8	0.14	0.83	0.4733	0.0121	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OVSAHO_OVARY	0.14	0.83	0.4854	TRUE	519	3926	326	965	0	FALSE	ACH-000409
OVSAHO_OVARY	UGGT1--MYO7B	36	13	UGGT1	19665	chr2:128900679:+	MYO7B	77813	chr2:128369825:+	INCL_NON_REF_SPLICE	YES	22	0	0.69	1	0.4369	0.1578	UGGT1->UDP-glucose_glycoprotein_glucosyltransferase_1,chr2:128848774-128953251:+,MYO7B->chr2:128293378-128395304:+,myosin_VIIB	OVSAHO_OVARY	0.69	1	0.5947	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	UBE2D3--SLC9B1	31	6	UBE2D3	3857	chr4:103747642:-	SLC9B1	24377	chr4:103912869:-	ONLY_REF_SPLICE	YES	265	1	0.12	0.97	0.3762	0.0728	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[16152],UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,SLC9B1->chr4:103806205-103940896:-,solute_carrier_family_9_member_B1	OVSAHO_OVARY	0.12	0.97	0.449	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	RP11-1407O15.2--PIP4K2B	30	4	RP11-1407O15.2	5790	chr17:36375100:-	PIP4K2B	35211	chr17:36936857:-	ONLY_REF_SPLICE	YES	67	31	0.34	0.52	0.3641	0.0485	RP11-1407O15.2->chr17:36337717-36421858:-,PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta	OVSAHO_OVARY	0.34	0.52	0.4126	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	RP11-123O10.4--GRIP1	28	10	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3398	0.1214	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OVSAHO_OVARY	1	1	0.4612	FALSE	416	2512	207	587	0	FALSE	ACH-000409
OVSAHO_OVARY	FDXR--GARNL3	24	6	FDXR	1996	chr17:72868161:-	GARNL3	21016	chr9:130073915:+	ONLY_REF_SPLICE	YES	33	0	0.48	1	0.2913	0.0728	{Klijn_CCL:Ovary=1},FDXR->chr17:72858619-72869156:-,ferredoxin_reductase,GARNL3->GTPase_activating_Rap/RanGAP_domain_like_3,chr9:129986544-130155939:+	OVSAHO_OVARY	0.48	1	0.3641	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ARID1A--RP1-153P14.8	22	6	ARID1A	7728	chr1:27059283:+	RP1-153P14.8	27821	chr6:37502052:+	ONLY_REF_SPLICE	YES	19	0	0.6	1	0.267	0.0728	ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,RP1-153P14.8->chr6:37475124-37503392:+	OVSAHO_OVARY	0.6	1	0.3398	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	RALGPS1--ENG	20	10	RALGPS1	4984	chr9:129740024:+	ENG	41275	chr9:130592106:-	ONLY_REF_SPLICE	YES	1	1	0.97	0.97	0.2427	0.1214	{Klijn_CCL:Ovary=1},RALGPS1->Ral_GEF_with_PH_domain_and_SH3_binding_motif_1,chr9:129677053-129985445:+,ENG->chr9:130577291-130617035:-,endoglin	OVSAHO_OVARY	0.97	0.97	0.3641	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	C7orf50--PIP4K2B	18	13	C7orf50	3078	chr7:1166893:-	PIP4K2B	23250	chr17:36935782:-	ONLY_REF_SPLICE	YES	56	40	0.36	0.44	0.2184	0.1578	{Klijn_CCL:Ovary=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,PIP4K2B->chr17:36921942-36956379:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_beta	OVSAHO_OVARY	0.36	0.44	0.3762	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	OR51S1--TP53I11	21	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2549	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	OVSAHO_OVARY	1	1	0.2549	TRUE	402	216	10	229	0	FALSE	ACH-000409
OVSAHO_OVARY	MKL1--GNB1L	12	31	MKL1	3549	chr22:40948110:-	GNB1L	23662	chr22:19842062:-	ONLY_REF_SPLICE	YES	1	13	0.98	0.77	0.1456	0.3762	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	OVSAHO_OVARY	0.77	0.98	0.5218	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	19	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	13771	3	0	0.88	0.2306	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	0.88	0.2549	FALSE	230	193	14	283	0	FALSE	ACH-000409
OVSAHO_OVARY	AP000525.9--LA16c-60G3.6	19	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2306	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	OVSAHO_OVARY	1	1	0.2306	TRUE	0	5	0	18	5	TRUE	ACH-000409
OVSAHO_OVARY	PXMP4--RBM39	4	57	PXMP4	1229	chr20:32307897:-	RBM39	16816	chr20:34320054:-	INCL_NON_REF_SPLICE	YES	51	913	0.54	0.06	0.0485	0.6917	{Klijn_CCL:Ovary=1},PXMP4->chr20:32294512-32308125:-,peroxisomal_membrane_protein_4,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	OVSAHO_OVARY	0.06	0.54	0.7402	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	PLXDC1--TAF13	18	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2184	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	OVSAHO_OVARY	1	1	0.2184	TRUE	7	10	0	216	0	FALSE	ACH-000409
OVSAHO_OVARY	SCMH1--FMNL1	15	7	SCMH1	12062	chr1:41578948:-	FMNL1	33656	chr17:43313501:+	INCL_NON_REF_SPLICE	YES	32	2	0.41	0.92	0.182	0.085	SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila),FMNL1->chr17:43298811-43324687:+,formin_like_1	OVSAHO_OVARY	0.41	0.92	0.267	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	NRIP1--AF127936.7	16	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1942	0.0243	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OVSAHO_OVARY	0.95	1	0.2185	FALSE	292	1546	117	613	0	FALSE	ACH-000409
OVSAHO_OVARY	UGGT1--MYO7B	13	13	UGGT1	19727	chr2:128900741:+	MYO7B	77813	chr2:128369825:+	INCL_NON_REF_SPLICE	YES	32	0	0.45	1	0.1578	0.1578	UGGT1->UDP-glucose_glycoprotein_glucosyltransferase_1,chr2:128848774-128953251:+,MYO7B->chr2:128293378-128395304:+,myosin_VIIB	OVSAHO_OVARY	0.45	1	0.3156	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	HSP90AB1--MT-RNR2	15	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4025	0	0	1	0.182	0.0121	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OVSAHO_OVARY	0	1	0.1941	FALSE	13	9	0	364	0	FALSE	ACH-000409
OVSAHO_OVARY	UGGT1--MYO7B	11	13	UGGT1	19701	chr2:128900715:+	MYO7B	77813	chr2:128369825:+	INCL_NON_REF_SPLICE	YES	28	0	0.46	1	0.1335	0.1578	UGGT1->UDP-glucose_glycoprotein_glucosyltransferase_1,chr2:128848774-128953251:+,MYO7B->chr2:128293378-128395304:+,myosin_VIIB	OVSAHO_OVARY	0.46	1	0.2913	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	AL589743.1--RP11-536C10.17	11	12	AL589743.1	9393	chr14:19680685:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	476	0	0.05	1	0.1335	0.1456	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	OVSAHO_OVARY	0.05	1	0.2791	TRUE	0	8	0	6	8	TRUE	ACH-000409
OVSAHO_OVARY	AP000525.9--LA16c-60G3.6	11	9	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	72	0	0.22	1	0.1335	0.1092	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	OVSAHO_OVARY	0.22	1	0.2427	TRUE	0	8	0	10	8	TRUE	ACH-000409
OVSAHO_OVARY	CTD-2314B22.3--RP11-536C10.19	11	9	CTD-2314B22.3	9273	chr14:19894700:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	489	0	0.04	1	0.1335	0.1092	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	OVSAHO_OVARY	0.04	1	0.2427	TRUE	0	1	0	4	1	TRUE	ACH-000409
OVSAHO_OVARY	HSP90AB1--MT-RNR2	13	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4045	0	0	1	0.1578	0.0121	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OVSAHO_OVARY	0	1	0.1699	FALSE	13	9	0	364	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	12	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18570	0	0	1	0.1456	0.0364	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	1	0.182	FALSE	231	217	16	283	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	12	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13787	7	0	0.67	0.1456	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	0.67	0.1699	FALSE	230	198	14	283	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	12	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16404	7	0	0.67	0.1456	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	0.67	0.1699	FALSE	231	205	14	283	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	12	2	MT-ND4	1201	chrM:10960:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13629	7	0	0.67	0.1456	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	0.67	0.1699	FALSE	230	193	14	283	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-TA--MT-TC	10	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1214	0.0728	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVSAHO_OVARY	1	1	0.1942	FALSE	462	80	0	856	0	FALSE	ACH-000409
OVSAHO_OVARY	RP11-353N4.6--SEC22B	10	5	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	110	509	0.12	0.03	0.1214	0.0607	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	OVSAHO_OVARY	0.03	0.12	0.1821	TRUE	49	42	7	43	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND6--MT-TE	11	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1335	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVSAHO_OVARY	1	1	0.1335	FALSE	499	1288	110	792	0	FALSE	ACH-000409
OVSAHO_OVARY	TMEM205--RPS28	11	0	TMEM205	3471	chr19:11453607:-	RPS28	6969	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1335	0	TMEM205->chr19:11453452-11457194:-,transmembrane_protein_205,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OVSAHO_OVARY	1	1	0.1335	TRUE	0	1	0	3	1	TRUE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	10	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17124	7	0	0.65	0.1214	0.0364	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	0.65	0.1578	FALSE	231	217	16	283	0	FALSE	ACH-000409
OVSAHO_OVARY	TMEM120B--WDR66	6	19	TMEM120B	1213	chr12:122150870:+	WDR66	30368	chr12:122380801:+	ONLY_REF_SPLICE	YES	19	7	0.57	0.78	0.0728	0.2306	{Klijn_CCL:Ovary=1},TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B,WDR66->WD_repeat_domain_66,chr12:122355768-122441833:+	OVSAHO_OVARY	0.57	0.78	0.3034	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MKL1--GNB1L	2	31	MKL1	5920	chr22:40915468:-	GNB1L	23662	chr22:19842062:-	ONLY_REF_SPLICE	YES	1	13	0.97	0.72	0.0243	0.3762	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	OVSAHO_OVARY	0.72	0.97	0.4005	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	PPAP2A--RP11-195E2.1	9	2	PPAP2A	1479	chr5:54830400:-	RP11-195E2.1	16080	chr5:70372179:-	ONLY_REF_SPLICE	YES	16	10	0.41	0.52	0.1092	0.0243	PPAP2A->chr5:54720682-54830878:-,RP11-195E2.1->chr5:70370052-70389020:-	OVSAHO_OVARY	0.41	0.52	0.1335	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	RNF8--RAB44	6	14	RNF8	3593	chr6:37328350:+	RAB44	25352	chr6:36690090:+	INCL_NON_REF_SPLICE	YES	56	0	0.26	1	0.0728	0.1699	RNF8->chr6:37321748-37362514:+,ring_finger_protein_8,RAB44->RAB44,_member_RAS_oncogene_family,chr6:36683256-36699870:+	OVSAHO_OVARY	0.26	1	0.2427	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	RP11-120D5.1--MID1	8	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	4	0.88	0.78	0.0971	0.0728	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OVSAHO_OVARY	0.78	0.88	0.1699	FALSE	16	356	14	466	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ATP6--MT-CO1	9	1	MT-ATP6	1400	chrM:8926:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	13276	19357	0	0	0.1092	0.0121	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OVSAHO_OVARY	0	0	0.1213	FALSE	183	104	9	328	0	FALSE	ACH-000409
OVSAHO_OVARY	PCNX--RAD51B	7	5	PCNX	11592	chr14:71445365:+	RAD51B	87172	chr14:69061202:+	ONLY_REF_SPLICE	YES	11	4	0.52	0.75	0.085	0.0607	PCNX->chr14:71374122-71582099:+,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	OVSAHO_OVARY	0.52	0.75	0.1457	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MKL1--GNB1L	6	8	MKL1	3549	chr22:40948110:-	GNB1L	26537	chr22:19799970:-	ONLY_REF_SPLICE	YES	1	38	0.93	0.27	0.0728	0.0971	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	OVSAHO_OVARY	0.27	0.93	0.1699	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MT-ATP6--MT-CO1	8	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0971	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OVSAHO_OVARY	1	1	0.0971	FALSE	183	104	9	328	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND6--COX7C	8	0	MT-ND6	1261	chrM:14413:-	COX7C	4608	chr5:85913803:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0971	0	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COX7C->chr5:85913721-85916779:+,cytochrome_c_oxidase_subunit_7C	OVSAHO_OVARY	1	1	0.0971	FALSE	0	0	0	7	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	7	3	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	17052	836	0	0.01	0.085	0.0364	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	0.01	0.1214	FALSE	231	217	16	283	0	FALSE	ACH-000409
OVSAHO_OVARY	RNF8--RAB44	4	15	RNF8	3593	chr6:37328350:+	RAB44	24190	chr6:36688928:+	ONLY_REF_SPLICE	YES	56	0	0.25	1	0.0485	0.182	RNF8->chr6:37321748-37362514:+,ring_finger_protein_8,RAB44->RAB44,_member_RAS_oncogene_family,chr6:36683256-36699870:+	OVSAHO_OVARY	0.25	1	0.2305	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	RP11-123O10.4--GRIP1	7	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.085	0.0364	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OVSAHO_OVARY	1	1	0.1214	FALSE	93	270	15	244	0	FALSE	ACH-000409
OVSAHO_OVARY	MKL1--GNB1L	1	26	MKL1	5920	chr22:40915468:-	GNB1L	24759	chr22:19808898:-	ONLY_REF_SPLICE	YES	1	15	0.96	0.64	0.0121	0.3155	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	OVSAHO_OVARY	0.64	0.96	0.3276	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MT-ATP6--MT-CO1	7	2	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3504	22100	0	0	0.085	0.0243	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OVSAHO_OVARY	0	0	0.1093	FALSE	183	104	9	328	0	FALSE	ACH-000409
OVSAHO_OVARY	UBE2D2--PJA2	7	2	UBE2D2	2832	chr5:138941400:+	PJA2	15847	chr5:108719221:-	ONLY_REF_SPLICE	YES	37	58	0.2	0.13	0.085	0.0243	UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2,PJA2->chr5:108670410-108745695:-,praja_ring_finger_ubiquitin_ligase_2	OVSAHO_OVARY	0.13	0.2	0.1093	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ELL--RP11-420K14.8	3	17	ELL	2327	chr19:18586624:-	RP11-420K14.8	20592	chr19:21971749:-	INCL_NON_REF_SPLICE	YES	66	0	0.23	1	0.0364	0.2063	ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,RP11-420K14.8->chr19:21951574-21976662:-	OVSAHO_OVARY	0.23	1	0.2427	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ELL--RP11-420K14.8	4	13	ELL	1207	chr19:18632731:-	RP11-420K14.8	20592	chr19:21971749:-	INCL_NON_REF_SPLICE	YES	53	0	0.24	1	0.0485	0.1578	ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,RP11-420K14.8->chr19:21951574-21976662:-	OVSAHO_OVARY	0.24	1	0.2063	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	5	9	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	17075	0	0	1	0.0607	0.1092	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	1	0.1699	FALSE	231	217	16	283	0	FALSE	ACH-000409
OVSAHO_OVARY	PCDH15--RP11-168O22.1	7	1	PCDH15	1318	chr10:57387385:-	RP11-168O22.1	68273	chr10:57335471:-	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.085	0.0121	GTEx_FI:{Adrenal_Gland=[count:35=pct:41.2],Pituitary=[count:2=pct:3.8],Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3]},PCDH15->chr10:55562531-57387702:-,protocadherin-related_15,RP11-168O22.1->chr10:57007515-57356993:-	OVSAHO_OVARY	0.8	1	0.0971	TRUE	32	58	0	7	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	6	3	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18003	41	0	0.18	0.0728	0.0364	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	0.18	0.1092	FALSE	231	205	14	283	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	5	7	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	16720	0	0	1	0.0607	0.085	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	1	0.1457	FALSE	231	217	16	283	0	FALSE	ACH-000409
OVSAHO_OVARY	PGS1--TEN1	5	5	PGS1	12972	chr17:76415756:+	TEN1	23037	chr17:73982268:+	ONLY_REF_SPLICE	YES	165	109	0.06	0.08	0.0607	0.0607	PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1,TEN1->TEN1_CST_complex_subunit,chr17:73975301-73996667:+	OVSAHO_OVARY	0.06	0.08	0.1214	TRUE	0	0	0	1	0	FALSE	ACH-000409
OVSAHO_OVARY	PGS1--TEN1	5	5	PGS1	13022	chr17:76415806:+	TEN1	23037	chr17:73982268:+	ONLY_REF_SPLICE	YES	152	109	0.06	0.08	0.0607	0.0607	PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1,TEN1->TEN1_CST_complex_subunit,chr17:73975301-73996667:+	OVSAHO_OVARY	0.06	0.08	0.1214	TRUE	0	0	0	1	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ATP6--MT-CO1	6	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0728	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OVSAHO_OVARY	1	1	0.0728	FALSE	183	104	9	328	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ATP6--MT-CO1	6	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0728	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OVSAHO_OVARY	1	1	0.0728	FALSE	183	104	9	328	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	5	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16602	41	0	0.18	0.0607	0.0485	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	0.18	0.1092	FALSE	231	217	16	283	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	5	3	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	18003	0	0	1	0.0607	0.0364	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	1	0.0971	FALSE	231	205	14	283	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	3	10	MT-ND4	1925	chrM:11684:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	16737	0	0	1	0.0364	0.1214	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	1	0.1578	FALSE	231	217	16	283	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	4	6	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2534	41	0	0.2	0.0485	0.0728	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	0.2	0.1213	FALSE	216	209	16	281	0	FALSE	ACH-000409
OVSAHO_OVARY	MTPAP--KIAA1462	5	2	MTPAP	8944	chr10:30638048:-	KIAA1462	26070	chr10:30358750:-	ONLY_REF_SPLICE	YES	18	0	0.28	1	0.0607	0.0243	MTPAP->chr10:30598730-30663377:-,mitochondrial_poly(A)_polymerase,KIAA1462->KIAA1462,chr10:30301729-30404423:-	OVSAHO_OVARY	0.28	1	0.085	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	3	9	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	17123	0	0	1	0.0364	0.1092	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	1	0.1456	FALSE	231	217	16	283	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND6--MT-TE	5	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0607	0.0121	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVSAHO_OVARY	0.75	1	0.0728	FALSE	499	1288	110	792	0	FALSE	ACH-000409
OVSAHO_OVARY	ELL--RP11-420K14.8	1	16	ELL	2327	chr19:18586624:-	RP11-420K14.8	21660	chr19:21951929:-	ONLY_REF_SPLICE	YES	66	0	0.2	1	0.0121	0.1942	ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,RP11-420K14.8->chr19:21951574-21976662:-	OVSAHO_OVARY	0.2	1	0.2063	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MT-ATP6--MT-CO1	5	0	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OVSAHO_OVARY	1	1	0.0607	FALSE	183	104	9	328	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ATP6--MT-CO1	5	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OVSAHO_OVARY	1	1	0.0607	FALSE	183	104	9	328	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVSAHO_OVARY	1	1	0.0607	FALSE	462	80	0	856	0	FALSE	ACH-000409
OVSAHO_OVARY	UBE2D3--SLC9B1	4	4	UBE2D3	3857	chr4:103747642:-	SLC9B1	30031	chr4:103853456:-	ONLY_REF_SPLICE	YES	265	5	0.03	0.62	0.0485	0.0485	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[16152],UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,SLC9B1->chr4:103806205-103940896:-,solute_carrier_family_9_member_B1	OVSAHO_OVARY	0.03	0.62	0.097	TRUE	0	0	0	1	0	FALSE	ACH-000409
OVSAHO_OVARY	C15orf57--CBX3	4	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	17	46	0.29	0.13	0.0485	0.0364	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OVSAHO_OVARY	0.13	0.29	0.0849	TRUE	267	562	48	632	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	4	3	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	18676	0	0	1	0.0485	0.0364	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	1	0.0849	FALSE	231	217	16	283	0	FALSE	ACH-000409
OVSAHO_OVARY	PCBD2--DDX46	4	3	PCBD2	3623	chr5:134246156:+	DDX46	35135	chr5:134130540:+	ONLY_REF_SPLICE	YES	43	247	0.14	0.03	0.0485	0.0364	LOCAL_REARRANGEMENT:+:[49773],PCBD2->chr5:134240596-134343649:+,pterin-4_alpha-carbinolamine_dehydratase_2,DDX46->DEAD-box_helicase_46,chr5:134094469-134190823:+	OVSAHO_OVARY	0.03	0.14	0.0849	TRUE	0	0	0	1	0	FALSE	ACH-000409
OVSAHO_OVARY	TRPC4AP--BLCAP	4	3	TRPC4AP	9141	chr20:33622926:-	BLCAP	33948	chr20:36124094:-	ONLY_REF_SPLICE	YES	399	11	0.02	0.39	0.0485	0.0364	TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,BLCAP->Oncogene{Bushman},bladder_cancer_associated_protein,chr20:36120874-36156333:-	OVSAHO_OVARY	0.02	0.39	0.0849	TRUE	0	0	0	1	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	4	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13771	7	0	0.46	0.0485	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	0.46	0.0728	FALSE	230	193	14	283	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	4	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13885	41	0	0.13	0.0485	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	0.13	0.0728	FALSE	230	198	14	283	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	4	2	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	20105	788	0	0.01	0.0485	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	0.01	0.0728	FALSE	231	217	16	283	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	4	2	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	16271	1687	0	0	0.0485	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	0	0.0728	FALSE	231	205	14	283	0	FALSE	ACH-000409
OVSAHO_OVARY	VAPB--APCDD1L-AS1	4	2	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	29152	chr20:57122868:+	ONLY_REF_SPLICE	YES	56	0	0.1	1	0.0485	0.0243	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	OVSAHO_OVARY	0.1	1	0.0728	FALSE	1	3	0	4	0	FALSE	ACH-000409
OVSAHO_OVARY	C15orf57--CBX3	4	1	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	16	46	0.24	0.1	0.0485	0.0121	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OVSAHO_OVARY	0.1	0.24	0.0606	TRUE	267	562	48	632	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	3	5	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15689	41	0	0.16	0.0364	0.0607	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	0.16	0.0971	FALSE	231	217	16	283	0	FALSE	ACH-000409
OVSAHO_OVARY	RP11-120D5.1--MID1	3	5	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	4	0.67	0.67	0.0364	0.0607	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	OVSAHO_OVARY	0.67	0.67	0.0971	FALSE	0	48	1	163	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ATP6--MT-CO1	4	0	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OVSAHO_OVARY	1	1	0.0485	FALSE	183	104	9	328	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ATP6--MT-CO1	4	0	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0485	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OVSAHO_OVARY	1	1	0.0485	FALSE	183	104	9	328	0	FALSE	ACH-000409
OVSAHO_OVARY	PCBD2--DDX46	3	4	PCBD2	13019	chr5:134305782:+	DDX46	35135	chr5:134130540:+	ONLY_REF_SPLICE	YES	1	247	0.88	0.03	0.0364	0.0485	LOCAL_REARRANGEMENT:+:[49773],PCBD2->chr5:134240596-134343649:+,pterin-4_alpha-carbinolamine_dehydratase_2,DDX46->DEAD-box_helicase_46,chr5:134094469-134190823:+	OVSAHO_OVARY	0.03	0.88	0.0849	TRUE	0	0	0	1	0	FALSE	ACH-000409
OVSAHO_OVARY	PCNX--RAD51B	4	0	PCNX	11592	chr14:71445365:+	RAD51B	92320	chr14:69149654:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0485	0	PCNX->chr14:71374122-71582099:+,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	OVSAHO_OVARY	1	1	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	PCNX--RAD51B	4	0	PCNX	11592	chr14:71445365:+	RAD51B	89684	chr14:69077723:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0485	0	PCNX->chr14:71374122-71582099:+,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	OVSAHO_OVARY	1	1	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	PCNX--RAD51B	4	0	PCNX	11592	chr14:71445365:+	RAD51B	93555	chr14:69196525:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0485	0	PCNX->chr14:71374122-71582099:+,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	OVSAHO_OVARY	1	1	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	3	3	MT-ND4	1459	chrM:11218:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19642	7	0	0.46	0.0364	0.0364	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	0.46	0.0728	FALSE	231	217	16	283	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	3	3	MT-ND4	1453	chrM:11212:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	YES	19324	0	0	1	0.0364	0.0364	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	1	0.0728	FALSE	231	217	16	283	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	3	3	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	19478	0	0	1	0.0364	0.0364	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	1	0.0728	FALSE	231	217	16	283	0	FALSE	ACH-000409
OVSAHO_OVARY	RNF8--RAB44	1	11	RNF8	3593	chr6:37328350:+	RAB44	26773	chr6:36693639:+	ONLY_REF_SPLICE	YES	56	4	0.18	0.75	0.0121	0.1335	RNF8->chr6:37321748-37362514:+,ring_finger_protein_8,RAB44->RAB44,_member_RAS_oncogene_family,chr6:36683256-36699870:+	OVSAHO_OVARY	0.18	0.75	0.1456	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	AP003900.6--AP000345.1	3	2	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0364	0.0243	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	OVSAHO_OVARY	0.71	1	0.0607	TRUE	0	8	0	37	1	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	NO	17056	964	0	0.01	0.0364	0.0243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVSAHO_OVARY	0	0.01	0.0607	FALSE	231	217	16	283	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1400	chrM:8926:+	MT-CO1	5381	chrM:6603:+	INCL_NON_REF_SPLICE	YES	13276	21076	0	0	0.0364	0.0121	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OVSAHO_OVARY	0	0	0.0485	FALSE	183	104	9	328	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND6--MT-TE	3	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0.0121	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVSAHO_OVARY	1	1	0.0485	FALSE	499	1288	110	792	0	FALSE	ACH-000409
OVSAHO_OVARY	VTI1A--RP11-57H14.3	3	1	VTI1A	13856	chr10:114428768:+	RP11-57H14.3	23363	chr10:114648494:+	INCL_NON_REF_SPLICE	YES	21	0	0.16	1	0.0364	0.0121	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	OVSAHO_OVARY	0.16	1	0.0485	FALSE	272	151	14	158	0	FALSE	ACH-000409
OVSAHO_OVARY	FTH1--RPS28	3	0	FTH1	1228	chr11:61734905:-	RPS28	8539	chr19:8386405:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	GTEx&tcga_normals:1/3694=0.03%,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OVSAHO_OVARY	1	1	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	KLHL26--FKBP8	3	0	KLHL26	1173	chr19:18747947:+	FKBP8	13665	chr19:18652805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_INVERSION:+:-:[92888],KLHL26->chr19:18747775-18781309:+,kelch_like_family_member_26,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	OVSAHO_OVARY	1	1	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MKL1--GNB1L	1	8	MKL1	5920	chr22:40915468:-	GNB1L	26537	chr22:19799970:-	ONLY_REF_SPLICE	NO	1	38	0.9	0.19	0.0121	0.0971	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	OVSAHO_OVARY	0.19	0.9	0.1092	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1182	chrM:8708:+	MT-CO1	5375	chrM:6597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OVSAHO_OVARY	1	1	0.0364	FALSE	183	104	9	328	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1130	chrM:8656:+	MT-CO1	5092	chrM:6314:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OVSAHO_OVARY	1	1	0.0364	FALSE	183	104	9	328	0	FALSE	ACH-000409
OVSAHO_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVSAHO_OVARY	1	1	0.0364	FALSE	499	1288	110	792	0	FALSE	ACH-000409
OVSAHO_OVARY	NRIP1--AF127936.7	2	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	4	0	0.6	1	0.0243	0.0485	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OVSAHO_OVARY	0.6	1	0.0728	FALSE	125	705	46	456	0	FALSE	ACH-000409
OVSAHO_OVARY	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	OVSAHO_OVARY	1	1	0.0364	TRUE	465	1949	224	605	0	FALSE	ACH-000409
OVSAHO_OVARY	RP11-353N4.6--SEC22B	1	7	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	110	562	0.07	0.01	0.0121	0.085	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	OVSAHO_OVARY	0.01	0.07	0.0971	FALSE	33	36	9	21	0	FALSE	ACH-000409
OVSAHO_OVARY	VAPB--APCDD1L-AS1	2	2	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	25288	chr20:57098225:+	ONLY_REF_SPLICE	YES	56	0	0.07	1	0.0243	0.0243	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	OVSAHO_OVARY	0.07	1	0.0486	FALSE	0	1	0	5	0	FALSE	ACH-000409
OVSAHO_OVARY	VAPB--APCDD1L-AS1	2	2	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	31664	chr20:57193796:+	ONLY_REF_SPLICE	YES	56	0	0.07	1	0.0243	0.0243	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	OVSAHO_OVARY	0.07	1	0.0486	FALSE	2	12	0	8	0	FALSE	ACH-000409
OVSAHO_OVARY	CMTM8--CMTM7	2	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	60	161	0.05	0.02	0.0243	0.0121	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	OVSAHO_OVARY	0.02	0.05	0.0364	FALSE	118	557	29	88	0	FALSE	ACH-000409
OVSAHO_OVARY	PCDH15--RP11-168O22.1	2	1	PCDH15	1318	chr10:57387385:-	RP11-168O22.1	70457	chr10:57007648:-	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0243	0.0121	GTEx_FI:{Adrenal_Gland=[count:35=pct:41.2],Pituitary=[count:2=pct:3.8],Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3]},PCDH15->chr10:55562531-57387702:-,protocadherin-related_15,RP11-168O22.1->chr10:57007515-57356993:-	OVSAHO_OVARY	0.6	1	0.0364	TRUE	24	53	0	5	0	FALSE	ACH-000409
OVSAHO_OVARY	RP11-634B7.4--TRIM58	2	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	2	1	0.6	0.0243	0.0121	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	OVSAHO_OVARY	0.6	1	0.0364	TRUE	158	633	76	73	0	FALSE	ACH-000409
OVSAHO_OVARY	TMEM120B--WDR66	1	5	TMEM120B	1213	chr12:122150870:+	WDR66	32764	chr12:122386890:+	ONLY_REF_SPLICE	YES	19	18	0.24	0.25	0.0121	0.0607	{Klijn_CCL:Ovary=1},TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B,WDR66->WD_repeat_domain_66,chr12:122355768-122441833:+	OVSAHO_OVARY	0.24	0.25	0.0728	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	DPH6-AS1--RP11-684B21.1	2	0	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	OVSAHO_OVARY	1	1	0.0243	TRUE	17	119	17	33	0	FALSE	ACH-000409
OVSAHO_OVARY	ESR1--MTHFD1L	2	0	ESR1	11300	chr6:152163922:+	MTHFD1L	58368	chr6:151330955:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	ESR1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:151977826-152450754:+,estrogen_receptor_1,MTHFD1L->chr6:151186685-151423023:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_1-like	OVSAHO_OVARY	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	SHISA5--MAP4	2	0	SHISA5	4663	chr3:48538570:-	MAP4	17477	chr3:48040369:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	SHISA5->chr3:48509197-48542259:-,shisa_family_member_5,MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4	OVSAHO_OVARY	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ANKRD7--ST7	1	3	ANKRD7	4659	chr7:117874599:+	ST7	21907	chr7:116739816:+	ONLY_REF_SPLICE	YES	3	87	0.57	0.04	0.0121	0.0364	ANKRD7->ankyrin_repeat_domain_7,chr7:117854727-117882785:+,ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7	OVSAHO_OVARY	0.04	0.57	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ANKRD7--ST7	1	3	ANKRD7	4659	chr7:117874599:+	ST7	22990	chr7:116759615:+	ONLY_REF_SPLICE	YES	3	94	0.57	0.04	0.0121	0.0364	ANKRD7->ankyrin_repeat_domain_7,chr7:117854727-117882785:+,ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7	OVSAHO_OVARY	0.04	0.57	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ANKRD7--ST7	1	3	ANKRD7	1132	chr7:117854858:+	ST7	21907	chr7:116739816:+	ONLY_REF_SPLICE	YES	6	87	0.4	0.04	0.0121	0.0364	ANKRD7->ankyrin_repeat_domain_7,chr7:117854727-117882785:+,ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7	OVSAHO_OVARY	0.04	0.4	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	ANKRD7--ST7	1	3	ANKRD7	1132	chr7:117854858:+	ST7	20758	chr7:116738667:+	ONLY_REF_SPLICE	YES	6	92	0.4	0.04	0.0121	0.0364	ANKRD7->ankyrin_repeat_domain_7,chr7:117854727-117882785:+,ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7	OVSAHO_OVARY	0.04	0.4	0.0485	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	MKL1--GNB1L	1	2	MKL1	3549	chr22:40948110:-	GNB1L	27700	chr22:19794280:-	ONLY_REF_SPLICE	YES	1	46	0.75	0.06	0.0121	0.0243	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-	OVSAHO_OVARY	0.06	0.75	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000409
OVSAHO_OVARY	UBE2D2--PJA2	1	2	UBE2D2	3424	chr5:138941992:+	PJA2	15847	chr5:108719221:-	ONLY_REF_SPLICE	NO	46	58	0.06	0.05	0.0121	0.0243	UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2,PJA2->chr5:108670410-108745695:-,praja_ring_finger_ubiquitin_ligase_2	OVSAHO_OVARY	0.05	0.06	0.0364	TRUE	0	0	0	1	0	FALSE	ACH-000409
OVSAHO_OVARY	FGF14-IT1--FGF14	1	1	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0.0121	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	OVSAHO_OVARY	1	1	0.0242	TRUE	71	201	23	28	0	FALSE	ACH-000409
OVSAHO_OVARY	SCMH1--NMT1	1	1	SCMH1	12055	chr1:41578955:-	NMT1	29314	chr17:43159012:+	ONLY_REF_SPLICE	YES	25	187	0.07	0.01	0.0121	0.0121	SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila),NMT1->N-myristoyltransferase_1,Oncogene{Bushman},chr17:43128978-43186384:+	OVSAHO_OVARY	0.01	0.07	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000409
OVSAHO_OVARY	TM9SF4--TPX2	1	1	TM9SF4	7095	chr20:30730908:+	TPX2	28119	chr20:30354359:+	ONLY_REF_SPLICE	YES	344	286	0.01	0.01	0.0121	0.0121	TM9SF4->chr20:30697309-30755061:+,transmembrane_9_superfamily_member_4,TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+	OVSAHO_OVARY	0.01	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000409
OVSAHO_OVARY	TMEM123--YAP1	1	1	TMEM123	5695	chr11:102319543:-	YAP1	17441	chr11:101984875:+	ONLY_REF_SPLICE	YES	409	71	0	0.03	0.0121	0.0121	{Klijn_CCL:Head-Neck=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	OVSAHO_OVARY	0	0.03	0.0242	FALSE	0	0	0	3	0	FALSE	ACH-000409
CAL148_BREAST	PTMA--PTMS	466	10	PTMA	6054	chr2:232576687:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	5612	685	0.08	0.41	3.3076	0.071	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	0.08	0.41	3.3786	TRUE	0	0	0	16	0	TRUE	ACH-000902
CAL148_BREAST	TIMM23B--LINC00843	95	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6743	0.1562	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAL148_BREAST	1	1	0.8305	TRUE	508	994	45	981	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TN	92	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.653	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL148_BREAST	1	1	0.653	FALSE	369	2501	205	193	0	FALSE	ACH-000902
CAL148_BREAST	OR51S1--TP53I11	86	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6104	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	CAL148_BREAST	1	1	0.6104	TRUE	402	216	10	229	0	FALSE	ACH-000902
CAL148_BREAST	ARMC10--OSR1	85	0	ARMC10	12353	chr7:102740016:+	OSR1	19766	chr2:19554191:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6033	0	GTEx_FI:{Blood_Vessel=[count:3=pct:0.8],Brain=[count:3=pct:0.5],Thyroid=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Esophagus=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Ovary=[count:1=pct:1.9]},ARMC10->armadillo_repeat_containing_10,chr7:102715328-102740205:+,OSR1->chr2:19551246-19558414:-,odd-skipped_related_transciption_factor_1	CAL148_BREAST	1	1	0.6033	TRUE	15	4	0	8	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TC	70	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4968	0.0284	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL148_BREAST	1	1	0.5252	FALSE	462	80	0	856	0	FALSE	ACH-000902
CAL148_BREAST	RP11-123O10.4--GRIP1	66	17	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4685	0.1207	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAL148_BREAST	1	1	0.5892	FALSE	416	2512	207	587	0	FALSE	ACH-000902
CAL148_BREAST	PTMA--PTMS	57	5	PTMA	6054	chr2:232576687:+	PTMS	13973	chr12:6879338:+	INCL_NON_REF_SPLICE	YES	5612	659	0.01	0.09	0.4046	0.0355	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	0.01	0.09	0.4401	TRUE	0	0	0	16	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND6--MT-TE	54	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3833	0.0355	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL148_BREAST	1	1	0.4188	FALSE	499	1288	110	792	0	FALSE	ACH-000902
CAL148_BREAST	TIMM23--RP11-464F9.1	54	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	189	7	0.23	0.89	0.3833	0.0071	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAL148_BREAST	0.23	0.89	0.3904	TRUE	519	3926	326	965	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	3	161	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	7	1	0.96	0.99	0.0213	1.1427	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.96	0.99	1.164	FALSE	344	826	44	306	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	3	159	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	6	1	0.96	0.99	0.0213	1.1286	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.96	0.99	1.1499	FALSE	344	826	44	306	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	9	117	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	1	0.98	0.99	0.0639	0.8304	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.98	0.99	0.8943	FALSE	344	821	44	306	0	FALSE	ACH-000902
CAL148_BREAST	PTMA--PTMS	34	8	PTMA	6060	chr2:232576693:+	PTMS	13789	chr12:6879154:+	INCL_NON_REF_SPLICE	YES	6043	845	0.01	0.05	0.2413	0.0568	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	0.01	0.05	0.2981	TRUE	0	0	0	16	0	FALSE	ACH-000902
CAL148_BREAST	ZNF654--HMGB2	36	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2555	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CAL148_BREAST	1	1	0.2555	TRUE	0	0	0	518	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TN	19	60	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1349	0.4259	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL148_BREAST	1	1	0.5608	FALSE	369	2501	205	193	0	FALSE	ACH-000902
CAL148_BREAST	CENPP--CCSER1	32	6	CENPP	6079	chr9:95142141:+	CCSER1	46238	chr4:91844521:+	ONLY_REF_SPLICE	YES	3	1	0.93	0.97	0.2271	0.0426	GTEx&tcga_normals:1/3694=0.03%,CENPP->centromere_protein_P,chr9:95087766-95382815:+,CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1	CAL148_BREAST	0.93	0.97	0.2697	TRUE	0	0	0	1	0	TRUE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	3	113	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	5	0	0.96	1	0.0213	0.8021	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.96	1	0.8234	FALSE	344	826	44	306	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	3	110	MT-ND4	1164	chrM:10923:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	5	0	0.96	1	0.0213	0.7808	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.96	1	0.8021	FALSE	344	826	44	306	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND6--MT-TE	21	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1491	0.1136	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL148_BREAST	0.97	1	0.2627	FALSE	499	1288	110	792	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TN	15	40	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1065	0.2839	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL148_BREAST	1	1	0.3904	FALSE	369	2501	205	193	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TN	22	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1562	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL148_BREAST	1	1	0.1562	FALSE	369	2501	205	193	0	FALSE	ACH-000902
CAL148_BREAST	SSR2--ERRFI1	19	7	SSR2	8092	chr1:155981601:-	ERRFI1	15006	chr1:8075752:-	ONLY_REF_SPLICE	YES	1001	8	0.03	0.76	0.1349	0.0497	SSR2->chr1:155978839-155990750:-,signal_sequence_receptor,_beta_(translocon-associated_protein_beta),ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-	CAL148_BREAST	0.03	0.76	0.1846	TRUE	0	0	0	1	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TN	16	15	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1136	0.1065	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL148_BREAST	1	1	0.2201	FALSE	369	2501	205	193	0	FALSE	ACH-000902
CAL148_BREAST	PTMA--PTMS	18	1	PTMA	6024	chr2:232576657:+	PTMS	13428	chr12:6878793:+	INCL_NON_REF_SPLICE	YES	5215	278	0	0.06	0.1278	0.0071	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	0	0.06	0.1349	TRUE	0	0	0	16	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	8	39	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	234	0	0.17	1	0.0568	0.2768	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.17	1	0.3336	FALSE	344	827	44	306	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TN	5	51	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.362	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL148_BREAST	1	1	0.3975	FALSE	369	2501	205	193	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND6--MT-TE	16	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1136	0.0355	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL148_BREAST	1	1	0.1491	FALSE	499	1288	110	792	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TC	16	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1136	0.0213	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL148_BREAST	1	1	0.1349	FALSE	462	80	0	856	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TN	5	39	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.2768	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL148_BREAST	1	1	0.3123	FALSE	369	2501	205	193	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	8	26	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	5	0	0.87	1	0.0568	0.1845	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.87	1	0.2413	FALSE	344	826	44	306	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND6--MT-TE	9	22	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0639	0.1562	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL148_BREAST	0.97	1	0.2201	FALSE	499	1288	110	792	0	FALSE	ACH-000902
CAL148_BREAST	PTMA--PTMS	14	1	PTMA	6024	chr2:232576657:+	PTMS	13722	chr12:6879087:+	INCL_NON_REF_SPLICE	YES	5215	594	0	0.02	0.0994	0.0071	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	0	0.02	0.1065	TRUE	0	0	0	16	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	4	39	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	7	0	0.86	1	0.0284	0.2768	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.86	1	0.3052	FALSE	344	826	44	306	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TN	8	23	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0568	0.1632	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL148_BREAST	1	1	0.22	FALSE	369	2501	205	193	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	7	26	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	5	0	0.87	1	0.0497	0.1845	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.87	1	0.2342	FALSE	344	826	44	306	0	FALSE	ACH-000902
CAL148_BREAST	PTMA--PTMS	12	4	PTMA	6054	chr2:232576687:+	PTMS	13976	chr12:6879341:+	INCL_NON_REF_SPLICE	YES	5612	618	0	0.03	0.0852	0.0284	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	0	0.03	0.1136	TRUE	0	0	0	16	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	3	39	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	5	0	0.89	1	0.0213	0.2768	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.89	1	0.2981	FALSE	344	826	44	306	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TN	3	39	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0213	0.2768	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL148_BREAST	1	1	0.2981	FALSE	369	2501	205	193	0	FALSE	ACH-000902
CAL148_BREAST	NRIP1--AF127936.7	12	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.83	1	0.0852	0.0213	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL148_BREAST	0.83	1	0.1065	FALSE	292	1546	117	613	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	6	25	MT-ND4	1114	chrM:10873:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	5	0	0.86	1	0.0426	0.1774	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.86	1	0.22	FALSE	344	826	44	306	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TN	11	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0781	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL148_BREAST	1	1	0.0781	FALSE	369	2501	205	193	0	FALSE	ACH-000902
CAL148_BREAST	RP11-634B7.4--TRIM58	9	6	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0639	0.0426	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	CAL148_BREAST	1	1	0.1065	TRUE	158	633	76	73	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	4	25	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6	0	0.83	1	0.0284	0.1774	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.83	1	0.2058	FALSE	344	826	44	306	0	FALSE	ACH-000902
CAL148_BREAST	SLC2A4RG--PTMA	10	1	SLC2A4RG	3513	chr20:62373726:+	PTMA	12643	chr2:232576631:+	INCL_NON_REF_SPLICE	NO	421	5512	0.03	0	0.071	0.0071	SLC2A4RG->SLC2A4_regulator,chr20:62371214-62374858:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CAL148_BREAST	0	0.03	0.0781	FALSE	0	0	0	1	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	4	24	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0284	0.1703	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.97	1	0.1987	FALSE	344	821	44	306	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	3	28	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0213	0.1987	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.91	1	0.22	FALSE	344	826	44	306	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND6--MT-TE	4	23	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0284	0.1632	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL148_BREAST	0.96	1	0.1916	FALSE	499	1288	110	792	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	4	21	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	7	0	0.78	1	0.0284	0.1491	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.78	1	0.1775	FALSE	344	826	44	306	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	6	12	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	11	0	0.62	1	0.0426	0.0852	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.62	1	0.1278	FALSE	344	827	44	306	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TN	9	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL148_BREAST	1	1	0.0639	FALSE	369	2501	205	193	0	FALSE	ACH-000902
CAL148_BREAST	NIPA2--POLA1	9	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	CAL148_BREAST	1	1	0.0639	TRUE	46	1352	75	139	0	FALSE	ACH-000902
CAL148_BREAST	PTMA--PTMS	9	0	PTMA	6002	chr2:232576635:+	PTMS	13746	chr12:6879111:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0639	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	1	1	0.0639	TRUE	0	0	0	16	0	TRUE	ACH-000902
CAL148_BREAST	HSP90AB1--MT-RNR2	8	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2031	0	0	1	0.0568	0.0071	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL148_BREAST	0	1	0.0639	FALSE	13	9	0	364	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	7	5	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.92	0.0497	0.0355	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.92	1	0.0852	FALSE	344	821	44	306	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TN	8	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0568	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL148_BREAST	1	1	0.0568	FALSE	369	2501	205	193	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND6--MT-TE	5	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0.0781	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL148_BREAST	1	1	0.1136	FALSE	499	1288	110	792	0	FALSE	ACH-000902
CAL148_BREAST	RP11-680G10.1--GSE1	7	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	27	1	0.25	0.0497	0.0142	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAL148_BREAST	0.25	1	0.0639	TRUE	458	1351	185	561	0	FALSE	ACH-000902
CAL148_BREAST	RP11-680G10.1--GSE1	7	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	124	1	0.07	0.0497	0.0142	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAL148_BREAST	0.07	1	0.0639	TRUE	465	1949	224	605	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND6--MT-TE	7	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL148_BREAST	1	1	0.0497	FALSE	499	1288	110	792	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TN	7	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL148_BREAST	1	1	0.0497	FALSE	369	2501	205	193	0	FALSE	ACH-000902
CAL148_BREAST	PTMA--PTMS	4	11	PTMA	6054	chr2:232576687:+	PTMS	13419	chr12:6878784:+	INCL_NON_REF_SPLICE	YES	5612	250	0	0.06	0.0284	0.0781	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	0	0.06	0.1065	TRUE	0	0	0	16	0	FALSE	ACH-000902
CAL148_BREAST	PTMA--PTMS	4	10	PTMA	6060	chr2:232576693:+	PTMS	13750	chr12:6879115:+	INCL_NON_REF_SPLICE	YES	6043	668	0	0.02	0.0284	0.071	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	0	0.02	0.0994	FALSE	0	0	0	16	0	FALSE	ACH-000902
CAL148_BREAST	PTMA--PTMS	4	10	PTMA	6054	chr2:232576687:+	PTMS	13774	chr12:6879139:+	INCL_NON_REF_SPLICE	YES	5612	818	0	0.02	0.0284	0.071	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	0	0.02	0.0994	FALSE	0	0	0	16	0	FALSE	ACH-000902
CAL148_BREAST	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2050	0	0	1	0.0426	0.0071	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL148_BREAST	0	1	0.0497	FALSE	13	9	0	364	0	FALSE	ACH-000902
CAL148_BREAST	PTMA--PTMS	5	5	PTMA	6060	chr2:232576693:+	PTMS	13967	chr12:6879332:+	INCL_NON_REF_SPLICE	YES	6043	763	0	0.01	0.0355	0.0355	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	0	0.01	0.071	FALSE	0	0	0	16	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	3	12	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	11	0	0.58	1	0.0213	0.0852	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	0.58	1	0.1065	FALSE	344	827	44	306	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND6--MT-TE	3	11	MT-ND6	1261	chrM:14413:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0213	0.0781	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL148_BREAST	0.93	1	0.0994	FALSE	499	1288	110	792	0	FALSE	ACH-000902
CAL148_BREAST	PTMA--PTMS	3	11	PTMA	6060	chr2:232576693:+	PTMS	13413	chr12:6878778:+	INCL_NON_REF_SPLICE	YES	6043	243	0	0.05	0.0213	0.0781	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	0	0.05	0.0994	FALSE	0	0	0	16	0	FALSE	ACH-000902
CAL148_BREAST	PTMA--PTMS	3	10	PTMA	6060	chr2:232576693:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	6043	685	0	0.02	0.0213	0.071	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	0	0.02	0.0923	FALSE	0	0	0	16	0	FALSE	ACH-000902
CAL148_BREAST	RP11-1379J22.5--UBE2D2	5	2	RP11-1379J22.5	1720	chr5:179085482:+	UBE2D2	10384	chr5:138979957:+	ONLY_REF_SPLICE	YES	9	95	0.44	0.07	0.0355	0.0142	RP11-1379J22.5->chr5:179084763-179091433:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	CAL148_BREAST	0.07	0.44	0.0497	TRUE	0	5	0	5	2	TRUE	ACH-000902
CAL148_BREAST	MT-TA--MT-TC	4	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0.0355	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL148_BREAST	1	1	0.0639	FALSE	462	80	0	856	0	FALSE	ACH-000902
CAL148_BREAST	PTMA--PTMS	4	5	PTMA	6060	chr2:232576693:+	PTMS	13973	chr12:6879338:+	INCL_NON_REF_SPLICE	YES	6043	659	0	0.01	0.0284	0.0355	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	0	0.01	0.0639	FALSE	0	0	0	16	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0355	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL148_BREAST	1	1	0.0355	FALSE	462	80	0	856	0	FALSE	ACH-000902
CAL148_BREAST	RP11-1379J22.5--MAZ	5	0	RP11-1379J22.5	1720	chr5:179085482:+	MAZ	9084	chr16:29819551:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0355	0	RP11-1379J22.5->chr5:179084763-179091433:+,MAZ->MYC_associated_zinc_finger_protein,chr16:29817427-29823649:+	CAL148_BREAST	1	1	0.0355	TRUE	0	0	0	2	0	TRUE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	1	1	0.0284	FALSE	344	821	44	306	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL148_BREAST	1	1	0.0284	FALSE	499	1288	110	792	0	FALSE	ACH-000902
CAL148_BREAST	PTMA--PTMS	4	0	PTMA	2857	chr2:232573461:+	PTMS	13404	chr12:6878769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	1	1	0.0284	TRUE	0	0	0	2	0	TRUE	ACH-000902
CAL148_BREAST	RP11-123O10.4--GRIP1	3	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.0213	0.0284	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAL148_BREAST	0.88	1	0.0497	FALSE	93	270	15	244	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0213	0.0213	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL148_BREAST	1	1	0.0426	FALSE	462	80	0	856	0	FALSE	ACH-000902
CAL148_BREAST	CMTM8--CMTM7	3	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	57	2	0.07	0.67	0.0213	0.0071	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	CAL148_BREAST	0.07	0.67	0.0284	FALSE	118	557	29	88	0	FALSE	ACH-000902
CAL148_BREAST	LYRM4--RPP40	3	1	LYRM4	4789	chr6:5216851:-	RPP40	24922	chr6:5002479:-	ONLY_REF_SPLICE	YES	140	51	0.03	0.07	0.0213	0.0071	NEIGHBORS[98530],LYRM4->LYR_motif_containing_4,chr6:5102827-5261172:-,RPP40->chr6:4994966-5004297:-,ribonuclease_P/MRP_subunit_p40	CAL148_BREAST	0.03	0.07	0.0284	FALSE	0	3	0	5	0	FALSE	ACH-000902
CAL148_BREAST	SH2B1--MT-CO3	3	1	SH2B1	10521	chr16:28883256:+	MT-CO3	15853	chrM:9268:+	INCL_NON_REF_SPLICE	YES	98	0	0.04	1	0.0213	0.0071	SH2B1->SH2B_adaptor_protein_1,chr16:28857921-28885526:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAL148_BREAST	0.04	1	0.0284	FALSE	0	0	0	1	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0213	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL148_BREAST	1	1	0.0213	FALSE	344	821	44	306	0	FALSE	ACH-000902
CAL148_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0213	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL148_BREAST	1	1	0.0213	FALSE	499	1288	110	792	0	FALSE	ACH-000902
CAL148_BREAST	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0213	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL148_BREAST	1	1	0.0213	FALSE	369	2501	205	193	0	FALSE	ACH-000902
CAL148_BREAST	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.32	1	0.0142	0.0284	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL148_BREAST	0.32	1	0.0426	FALSE	164	806	69	479	0	FALSE	ACH-000902
CAL148_BREAST	SBK1--RPS28	3	0	SBK1	2907	chr16:28328830:+	RPS28	12213	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0213	0	SBK1->SH3_domain_binding_kinase_1,chr16:28303840-28335170:+,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CAL148_BREAST	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000902
CAL148_BREAST	PTMA--PTMS	1	6	PTMA	6060	chr2:232576693:+	PTMS	13958	chr12:6879323:+	ONLY_REF_SPLICE	NO	6043	875	0	0.01	0.0071	0.0426	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	0	0.01	0.0497	FALSE	0	0	0	16	0	FALSE	ACH-000902
CAL148_BREAST	CENPP--CCSER1	2	1	CENPP	6079	chr9:95142141:+	CCSER1	47399	chr4:91859827:+	ONLY_REF_SPLICE	YES	3	1	0.5	0.75	0.0142	0.0071	GTEx&tcga_normals:1/3694=0.03%,CENPP->centromere_protein_P,chr9:95087766-95382815:+,CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1	CAL148_BREAST	0.5	0.75	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000902
CAL148_BREAST	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0142	0.0071	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL148_BREAST	0.5	1	0.0213	FALSE	25	145	6	90	0	FALSE	ACH-000902
CAL148_BREAST	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0142	0.0071	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CAL148_BREAST	0.75	1	0.0213	FALSE	16	356	14	466	0	FALSE	ACH-000902
CAL148_BREAST	SLC2A4RG--PTMA	2	1	SLC2A4RG	3504	chr20:62373717:+	PTMA	13165	chr2:232577153:+	ONLY_REF_SPLICE	YES	418	5854	0.01	0	0.0142	0.0071	SLC2A4RG->SLC2A4_regulator,chr20:62371214-62374858:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CAL148_BREAST	0	0.01	0.0213	FALSE	0	0	0	1	0	FALSE	ACH-000902
CAL148_BREAST	DOT1L--AP3D1	2	0	DOT1L	8576	chr19:2194576:+	AP3D1	62439	chr19:2102267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0142	0	GTEx_v2:{count=6;pct=0.07%;dist=Heart_-_Atrial_Appendage=2,Vagina=1,Brain_-_Hypothalamus=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Testis=1},NEIGHBORS_OVERLAP:+:-:[316],DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	CAL148_BREAST	1	1	0.0142	FALSE	1	0	0	3	0	FALSE	ACH-000902
CAL148_BREAST	PTMA--PTMS	2	0	PTMA	6593	chr2:232577226:+	PTMS	14193	chr12:6879558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0142	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CAL148_BREAST	1	1	0.0142	TRUE	0	0	0	16	0	TRUE	ACH-000902
CAL148_BREAST	TULP4--RP11-732M18.3	2	0	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0142	0	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	CAL148_BREAST	1	1	0.0142	TRUE	126	140	6	21	0	FALSE	ACH-000902
CAL148_BREAST	RP11-1379J22.5--TAF6	1	3	RP11-1379J22.5	1720	chr5:179085482:+	TAF6	10816	chr7:99711891:-	ONLY_REF_SPLICE	YES	9	217	0.31	0.02	0.0071	0.0213	RP11-1379J22.5->chr5:179084763-179091433:+,TAF6->TATA-box_binding_protein_associated_factor_6,chr7:99704693-99717464:-	CAL148_BREAST	0.02	0.31	0.0284	TRUE	0	0	0	1	0	FALSE	ACH-000902
CAL148_BREAST	BBS9--BMPER	1	1	BBS9	29146	chr7:33573788:+	BMPER	36381	chr7:33946430:+	ONLY_REF_SPLICE	YES	27	0	0.07	1	0.0071	0.0071	GTEx_FI:{Nerve=[count:2=pct:1.2],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3]},BBS9->Bardet-Biedl_syndrome_9,chr7:33168856-33645680:+,BMPER->BMP_binding_endothelial_regulator,chr7:33944523-34195484:+	CAL148_BREAST	0.07	1	0.0142	TRUE	4	8	0	1	0	FALSE	ACH-000902
CAL148_BREAST	EEF2--RPL13A	1	1	EEF2	4224	chr19:3982244:-	RPL13A	14350	chr19:49993107:+	ONLY_REF_SPLICE	YES	2929	4	0	0.33	0.0071	0.0071	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.03%,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	CAL148_BREAST	0	0.33	0.0142	FALSE	0	0	0	1	0	FALSE	ACH-000902
CAL148_BREAST	RBM10--UBE2D2	1	1	RBM10	2759	chrX:47006897:+	UBE2D2	21820	chr5:138979957:+	ONLY_REF_SPLICE	NO	104	95	0.02	0.02	0.0071	0.0071	RBM10->ArcherDX_panel,FoundationOne_panel,RNA_binding_motif_protein_10,chrX:47004268-47046212:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	CAL148_BREAST	0.02	0.02	0.0142	TRUE	0	0	0	2	0	FALSE	ACH-000902
CAL148_BREAST	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0071	0.0071	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CAL148_BREAST	1	1	0.0142	FALSE	0	48	1	163	0	FALSE	ACH-000902
CAL148_BREAST	SIPA1L3--SPINT2	1	1	SIPA1L3	1131	chr19:38397998:+	SPINT2	42588	chr19:38774267:+	ONLY_REF_SPLICE	NO	40	2833	0.05	0	0.0071	0.0071	NEIGHBORS[35663],SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2	CAL148_BREAST	0	0.05	0.0142	FALSE	0	1	0	3	0	FALSE	ACH-000902
LUDLU1_LUNG	TIMM23B--PARGP1	82	16	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.2674	0.2473	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	LUDLU1_LUNG	1	1	1.5147	TRUE	393	2105	140	19	0	FALSE	ACH-000390
LUDLU1_LUNG	FRMD8--SLC25A45	46	24	FRMD8	2831	chr11:65156999:+	SLC25A45	16658	chr11:65150042:-	ONLY_REF_SPLICE	YES	50	0	0.58	1	0.711	0.3709	LOCAL_INVERSION:+:-:[2898],FRMD8->FERM_domain_containing_8,Oncogene{Bushman},chr11:65154070-65180996:+,SLC25A45->chr11:65142663-65151172:-,solute_carrier_family_25_member_45	LUDLU1_LUNG	0.58	1	1.0819	TRUE	0	0	0	1	0	TRUE	ACH-000390
LUDLU1_LUNG	TIMM23--RP11-464F9.1	51	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	175	3	0.23	0.95	0.7883	0.0309	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LUDLU1_LUNG	0.23	0.95	0.8192	TRUE	519	3926	326	965	0	FALSE	ACH-000390
LUDLU1_LUNG	RP11-123O10.4--GRIP1	29	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4482	0.0464	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LUDLU1_LUNG	1	1	0.4946	FALSE	416	2512	207	587	0	FALSE	ACH-000390
LUDLU1_LUNG	ZNF654--HMGB2	24	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3709	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	LUDLU1_LUNG	1	1	0.3709	TRUE	0	0	0	518	0	FALSE	ACH-000390
LUDLU1_LUNG	MT-TA--MT-TC	13	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2009	0.0309	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LUDLU1_LUNG	1	1	0.2318	FALSE	462	80	0	856	0	FALSE	ACH-000390
LUDLU1_LUNG	NPM1P24--SET	12	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1855	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LUDLU1_LUNG	1	1	0.1855	TRUE	0	0	0	434	0	FALSE	ACH-000390
LUDLU1_LUNG	RP11-680G10.1--GSE1	10	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	16	1	0.41	0.1546	0.0155	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LUDLU1_LUNG	0.41	1	0.1701	TRUE	465	1949	224	605	0	FALSE	ACH-000390
LUDLU1_LUNG	MT-ND4--MT-ATP8	10	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1546	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LUDLU1_LUNG	1	1	0.1546	FALSE	230	198	14	283	0	FALSE	ACH-000390
LUDLU1_LUNG	MT-ND4--MT-ATP8	10	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1546	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LUDLU1_LUNG	1	1	0.1546	FALSE	230	193	14	283	0	FALSE	ACH-000390
LUDLU1_LUNG	MT-ND4--MT-ATP8	9	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1391	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LUDLU1_LUNG	1	1	0.1391	FALSE	230	193	14	283	0	FALSE	ACH-000390
LUDLU1_LUNG	TXNRD1--RP11-818F20.4	8	3	TXNRD1	11664	chr12:104682818:+	RP11-818F20.4	35622	chr12:104565551:+	ONLY_REF_SPLICE	YES	798	0	0.01	1	0.1236	0.0464	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	LUDLU1_LUNG	0.01	1	0.17	TRUE	0	0	0	2	0	FALSE	ACH-000390
LUDLU1_LUNG	MT-ATP6--MT-CO1	8	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9665	24051	0	0	0.1236	0.0155	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LUDLU1_LUNG	0	0	0.1391	FALSE	183	104	9	328	0	FALSE	ACH-000390
LUDLU1_LUNG	RP11-96H19.1--RP11-446N19.1	7	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1082	0.0773	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LUDLU1_LUNG	1	1	0.1855	FALSE	515	4851	409	746	0	FALSE	ACH-000390
LUDLU1_LUNG	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1236	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LUDLU1_LUNG	1	1	0.1236	FALSE	13	9	0	364	0	FALSE	ACH-000390
LUDLU1_LUNG	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1082	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LUDLU1_LUNG	1	1	0.1082	FALSE	13	9	0	364	0	FALSE	ACH-000390
LUDLU1_LUNG	MT-ND4--MT-ATP8	6	1	MT-ND4	1531	chrM:11290:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15370	5	0	0.58	0.0927	0.0155	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LUDLU1_LUNG	0	0.58	0.1082	FALSE	231	217	16	283	0	FALSE	ACH-000390
LUDLU1_LUNG	MT-ND4--MT-ATP8	6	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0927	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LUDLU1_LUNG	1	1	0.0927	FALSE	231	205	14	283	0	FALSE	ACH-000390
LUDLU1_LUNG	TXNRD1--RP11-818F20.4	5	3	TXNRD1	11674	chr12:104682828:+	RP11-818F20.4	35626	chr12:104565555:+	INCL_NON_REF_SPLICE	YES	1010	0	0.01	1	0.0773	0.0464	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	LUDLU1_LUNG	0.01	1	0.1237	TRUE	0	0	0	2	0	FALSE	ACH-000390
LUDLU1_LUNG	MT-ATP6--MT-CO1	5	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11675	23963	0	0	0.0773	0.0155	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LUDLU1_LUNG	0	0	0.0928	FALSE	183	104	9	328	0	FALSE	ACH-000390
LUDLU1_LUNG	MT-ND4--MT-ATP8	5	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12377	5	0	0.55	0.0773	0.0155	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LUDLU1_LUNG	0	0.55	0.0928	FALSE	231	217	16	283	0	FALSE	ACH-000390
LUDLU1_LUNG	SLC7A5--ATP5G2	5	0	SLC7A5	8052	chr16:87871490:-	ATP5G2	21321	chr12:54066421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0773	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	LUDLU1_LUNG	1	1	0.0773	TRUE	0	0	0	7	0	TRUE	ACH-000390
LUDLU1_LUNG	MT-TA--MT-TC	4	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0618	0.0309	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LUDLU1_LUNG	1	1	0.0927	FALSE	462	80	0	856	0	FALSE	ACH-000390
LUDLU1_LUNG	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.55	0.0618	0.0309	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LUDLU1_LUNG	0.55	1	0.0927	TRUE	458	1351	185	561	0	FALSE	ACH-000390
LUDLU1_LUNG	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0464	0.0927	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LUDLU1_LUNG	1	1	0.1391	FALSE	467	2173	244	435	0	FALSE	ACH-000390
LUDLU1_LUNG	MT-ATP6--MT-CO1	3	5	MT-ATP6	1477	chrM:9003:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	7413	21648	0	0	0.0464	0.0773	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LUDLU1_LUNG	0	0	0.1237	FALSE	183	104	9	328	0	FALSE	ACH-000390
LUDLU1_LUNG	MT-ND5--MT-CO3	4	1	MT-ND5	2591	chrM:13927:+	MT-CO3	6171	chrM:9565:+	INCL_NON_REF_SPLICE	YES	1901	14945	0	0	0.0618	0.0155	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	LUDLU1_LUNG	0	0	0.0773	FALSE	0	15	2	18	0	FALSE	ACH-000390
LUDLU1_LUNG	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0464	0.0773	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LUDLU1_LUNG	1	1	0.1237	FALSE	407	2205	196	549	0	FALSE	ACH-000390
LUDLU1_LUNG	MT-ND5--MT-CO3	3	2	MT-ND5	2730	chrM:14066:+	MT-CO3	6178	chrM:9572:+	INCL_NON_REF_SPLICE	YES	5	14764	0.5	0	0.0464	0.0309	LOCAL_REARRANGEMENT:+:[2347],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	LUDLU1_LUNG	0	0.5	0.0773	FALSE	0	15	2	17	0	FALSE	ACH-000390
LUDLU1_LUNG	TXNRD1--RP11-818F20.4	3	2	TXNRD1	11665	chr12:104682819:+	RP11-818F20.4	35677	chr12:104565606:+	INCL_NON_REF_SPLICE	YES	825	5	0.01	0.5	0.0464	0.0309	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	LUDLU1_LUNG	0.01	0.5	0.0773	FALSE	0	0	0	2	0	FALSE	ACH-000390
LUDLU1_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	11573	22281	0	0	0.0464	0.0155	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LUDLU1_LUNG	0	0	0.0619	FALSE	183	104	9	328	0	FALSE	ACH-000390
LUDLU1_LUNG	MGST1--RPS27A	3	0	MGST1	5873	chr12:16507204:+	RPS27A	25404	chr2:55459944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0464	0	MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	LUDLU1_LUNG	1	1	0.0464	TRUE	0	0	0	2	0	TRUE	ACH-000390
LUDLU1_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LUDLU1_LUNG	1	1	0.0464	FALSE	231	217	16	283	0	FALSE	ACH-000390
LUDLU1_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LUDLU1_LUNG	1	1	0.0464	FALSE	231	205	14	283	0	FALSE	ACH-000390
LUDLU1_LUNG	DPH6--SCG5	2	0	DPH6	9984	chr15:35742886:-	SCG5	28675	chr15:32971967:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	DPH6->chr15:35509546-35838394:-,diphthamine_biosynthesis_6,SCG5->chr15:32933877-32989299:+,secretogranin_V	LUDLU1_LUNG	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000390
LUDLU1_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LUDLU1_LUNG	1	1	0.0309	FALSE	292	1546	117	613	0	FALSE	ACH-000390
LUDLU1_LUNG	RP11-849F2.7--UBQLN1	2	0	RP11-849F2.7	3186	chr17:8283114:-	UBQLN1	17709	chr9:86292876:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0309	0	RP11-849F2.7->chr17:8271956-8286505:-,UBQLN1->chr9:86274878-86323118:-,ubiquilin_1	LUDLU1_LUNG	1	1	0.0309	TRUE	0	0	0	1	0	TRUE	ACH-000390
LUDLU1_LUNG	TXNRD1--RP11-818F20.4	1	3	TXNRD1	12166	chr12:104683320:+	RP11-818F20.4	35622	chr12:104565551:+	ONLY_REF_SPLICE	YES	1002	0	0	1	0.0155	0.0464	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	LUDLU1_LUNG	0	1	0.0619	FALSE	0	0	0	2	0	FALSE	ACH-000390
LUDLU1_LUNG	TXNRD1--RP11-818F20.4	1	2	TXNRD1	11664	chr12:104682818:+	RP11-818F20.4	36886	chr12:104571295:+	ONLY_REF_SPLICE	NO	798	5	0	0.38	0.0155	0.0309	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	LUDLU1_LUNG	0	0.38	0.0464	FALSE	0	1	0	2	0	FALSE	ACH-000390
LUDLU1_LUNG	AC002066.1--AC073130.1	1	1	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0155	0.0155	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	LUDLU1_LUNG	1	1	0.031	FALSE	0	3	0	33	0	FALSE	ACH-000390
LUDLU1_LUNG	PLCB4--PREX1	1	1	PLCB4	4901	chr20:9198099:+	PREX1	48626	chr20:47364417:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0155	0.0155	PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1	LUDLU1_LUNG	0.67	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000390
LUDLU1_LUNG	RP11-624L4.1--RP11-265N7.1	1	1	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0155	0.0155	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	LUDLU1_LUNG	0.2	1	0.031	FALSE	0	20	1	20	0	FALSE	ACH-000390
LUDLU1_LUNG	UBAP1--UBE2R2	1	1	UBAP1	1236	chr9:34179238:+	UBE2R2	16187	chr9:33886879:+	ONLY_REF_SPLICE	YES	156	218	0.01	0.01	0.0155	0.0155	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Muscle=[count:6=pct:2.6],Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4]},GTEx_v2:{count=2;pct=0.02%;dist=Vagina=1,Muscle_-_Skeletal=1},UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	LUDLU1_LUNG	0.01	0.01	0.031	FALSE	8	5	0	9	0	FALSE	ACH-000390
LUDLU1_LUNG	WWOX--RP11-319G9.5	1	1	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	9	0	0.18	1	0.0155	0.0155	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	LUDLU1_LUNG	0.18	1	0.031	FALSE	33	33	2	19	0	FALSE	ACH-000390
TCCSUP_URINARY_TRACT	TIMM23B--LINC00843	127	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.7862	0.436	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TCCSUP_URINARY_TRACT	0.99	1	2.2222	TRUE	508	994	45	981	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	KANSL1--ARL17B	89	20	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	31	45	0.78	0.71	1.2518	0.2813	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	TCCSUP_URINARY_TRACT	0.71	0.78	1.5331	TRUE	181	1564	124	196	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	OR51S1--TP53I11	80	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1252	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	TCCSUP_URINARY_TRACT	1	1	1.1252	TRUE	402	216	10	229	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	TIMM23--RP11-464F9.1	70	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	126	4	0.36	0.95	0.9845	0.0141	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TCCSUP_URINARY_TRACT	0.36	0.95	0.9986	TRUE	519	3926	326	965	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	BAZ2A--NACA	31	24	BAZ2A	3376	chr12:57023909:-	NACA	38221	chr12:57108471:-	ONLY_REF_SPLICE	YES	35	856	0.61	0.06	0.436	0.3376	LOCAL_REARRANGEMENT:-:[75612],BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,NACA->Oncogene{Bushman},chr12:57106212-57125412:-,nascent_polypeptide-associated_complex_alpha_subunit	TCCSUP_URINARY_TRACT	0.06	0.61	0.7736	TRUE	0	1	0	1	1	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	BAZ2A--NACA	28	10	BAZ2A	2725	chr12:57024560:-	NACA	38221	chr12:57108471:-	ONLY_REF_SPLICE	YES	16	856	0.7	0.04	0.3938	0.1406	LOCAL_REARRANGEMENT:-:[75612],BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,NACA->Oncogene{Bushman},chr12:57106212-57125412:-,nascent_polypeptide-associated_complex_alpha_subunit	TCCSUP_URINARY_TRACT	0.04	0.7	0.5344	TRUE	0	1	0	1	1	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	AP003900.6--AC011718.2	27	6	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.3797	0.0844	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	TCCSUP_URINARY_TRACT	0.97	1	0.4641	TRUE	0	3	0	38	3	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	PHTF2--CCDC146	26	10	PHTF2	2338	chr7:77469617:+	CCDC146	52331	chr7:76958713:+	ONLY_REF_SPLICE	YES	30	0	0.55	1	0.3657	0.1406	PHTF2->chr7:77428122-77586818:+,putative_homeodomain_transcription_factor_2,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	TCCSUP_URINARY_TRACT	0.55	1	0.5063	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ND6--MT-TE	23	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3235	0.0422	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TCCSUP_URINARY_TRACT	1	1	0.3657	FALSE	499	1288	110	792	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	AP003900.6--AC011718.2	20	6	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2813	0.0844	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	TCCSUP_URINARY_TRACT	1	1	0.3657	TRUE	0	5	0	45	5	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-TA--MT-TC	20	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2813	0.0281	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TCCSUP_URINARY_TRACT	1	1	0.3094	FALSE	462	80	0	856	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	NDST2--CAMK2G	18	3	NDST2	9551	chr10:75562432:-	CAMK2G	24510	chr10:75597269:-	ONLY_REF_SPLICE	YES	20	38	0.51	0.36	0.2532	0.0422	LOCAL_REARRANGEMENT:-:[670],NDST2->N-deacetylase/N-sulfotransferase_2,chr10:75561669-75571589:-,CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-	TCCSUP_URINARY_TRACT	0.36	0.51	0.2954	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	RP11-1319K7.1--OCLN	16	6	RP11-1319K7.1	12960	chr5:69394512:-	OCLN	23178	chr5:68830521:+	ONLY_REF_SPLICE	YES	28	71	0.44	0.24	0.225	0.0844	GTEx_FI:{Blood=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Breast=[count:2=pct:1.8],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Spleen=[count:1=pct:0.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3]},RP11-1319K7.1->chr5:69390202-69424261:-,OCLN->chr5:68788119-68853931:+,occludin	TCCSUP_URINARY_TRACT	0.24	0.44	0.3094	TRUE	18	3	1	7	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ND6--MT-TE	16	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.225	0.0422	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TCCSUP_URINARY_TRACT	1	1	0.2672	FALSE	499	1288	110	792	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ND6--MT-TE	12	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.1688	0.1828	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TCCSUP_URINARY_TRACT	0.93	1	0.3516	FALSE	499	1288	110	792	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	C10orf112--PLXDC2	14	0	C10orf112	32754	chr10:20079115:+	PLXDC2	37923	chr10:20290704:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1969	0	NEIGHBORS[25838],C10orf112->chr10:19492779-20079330:+,PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2	TCCSUP_URINARY_TRACT	1	1	0.1969	FALSE	73	74	3	10	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	SLC1A5--MT-ND4L	12	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1089	0	0.01	1	0.1688	0.0141	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TCCSUP_URINARY_TRACT	0.01	1	0.1829	FALSE	0	0	0	189	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	ZNF654--HMGB2	12	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1688	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TCCSUP_URINARY_TRACT	1	1	0.1688	TRUE	0	0	0	518	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ND4--MT-ATP8	11	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1547	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TCCSUP_URINARY_TRACT	1	1	0.1547	FALSE	230	193	14	283	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	WDR55--IK	9	4	WDR55	1428	chr5:140044688:+	IK	18126	chr5:140033523:+	ONLY_REF_SPLICE	YES	60	271	0.18	0.05	0.1266	0.0563	LOCAL_REARRANGEMENT:+:[2197],WDR55->WD_repeat_domain_55,chr5:140044261-140053709:+,IK->IK_cytokine,_down-regulator_of_HLA_II,chr5:140026643-140042064:+	TCCSUP_URINARY_TRACT	0.05	0.18	0.1829	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	9	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1266	0.0422	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TCCSUP_URINARY_TRACT	1	1	0.1688	FALSE	515	4851	409	746	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	ATP9B--ABHD3	8	4	ATP9B	13812	chr18:76914555:+	ABHD3	63870	chr18:19237113:-	ONLY_REF_SPLICE	YES	8	41	0.6	0.23	0.1125	0.0563	GTEx&tcga_normals:1/3694=0.03%,ATP9B->ATPase_phospholipid_transporting_9B_(putative),chr18:76829285-77138283:+,ABHD3->abhydrolase_domain_containing_3,chr18:19230858-19284766:-	TCCSUP_URINARY_TRACT	0.23	0.6	0.1688	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	CTB-78F1.2--TENM2	9	0	CTB-78F1.2	1045	chr5:167148412:+	TENM2	11546	chr5:167302991:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1266	0	NEIGHBORS_OVERLAP:+:+:[7761],CTB-78F1.2->chr5:167148368-167156129:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	TCCSUP_URINARY_TRACT	1	1	0.1266	FALSE	1	3	0	6	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ATP6--MT-CO1	9	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1266	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TCCSUP_URINARY_TRACT	1	1	0.1266	FALSE	183	104	9	328	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ND6--MT-TE	3	22	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0422	0.3094	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TCCSUP_URINARY_TRACT	0.93	1	0.3516	FALSE	499	1288	110	792	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ND4--MT-ATP8	8	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11886	9	0	0.5	0.1125	0.0141	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TCCSUP_URINARY_TRACT	0	0.5	0.1266	FALSE	231	217	16	283	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	BAZ2A--NACA	6	7	BAZ2A	1635	chr12:57029966:-	NACA	38221	chr12:57108471:-	ONLY_REF_SPLICE	YES	17	856	0.43	0.01	0.0844	0.0985	LOCAL_REARRANGEMENT:-:[75612],BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,NACA->Oncogene{Bushman},chr12:57106212-57125412:-,nascent_polypeptide-associated_complex_alpha_subunit	TCCSUP_URINARY_TRACT	0.01	0.43	0.1829	TRUE	0	1	0	1	1	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-TA--MT-TC	7	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0985	0.0281	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TCCSUP_URINARY_TRACT	1	1	0.1266	FALSE	462	80	0	856	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0985	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TCCSUP_URINARY_TRACT	1	1	0.0985	FALSE	13	9	0	364	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0985	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TCCSUP_URINARY_TRACT	1	1	0.0985	FALSE	13	9	0	364	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ATP6--MT-CO1	6	4	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2813	24076	0	0	0.0844	0.0563	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TCCSUP_URINARY_TRACT	0	0	0.1407	FALSE	183	104	9	328	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ND6--MT-TE	4	12	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0.1688	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TCCSUP_URINARY_TRACT	1	1	0.2251	FALSE	499	1288	110	792	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	NDST2--CAMK2G	5	6	NDST2	9551	chr10:75562432:-	CAMK2G	23447	chr10:75599359:-	ONLY_REF_SPLICE	YES	20	41	0.35	0.21	0.0703	0.0844	LOCAL_REARRANGEMENT:-:[670],NDST2->N-deacetylase/N-sulfotransferase_2,chr10:75561669-75571589:-,CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-	TCCSUP_URINARY_TRACT	0.21	0.35	0.1547	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	SLC1A5--MT-ND4L	6	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1077	0	0.01	1	0.0844	0.0141	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TCCSUP_URINARY_TRACT	0.01	1	0.0985	FALSE	0	0	0	189	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	COL1A1--NPM1	6	0	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0844	0	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	TCCSUP_URINARY_TRACT	1	1	0.0844	TRUE	0	0	0	31	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ATP6--MT-CO1	6	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0844	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TCCSUP_URINARY_TRACT	1	1	0.0844	FALSE	183	104	9	328	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0844	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TCCSUP_URINARY_TRACT	1	1	0.0844	FALSE	183	104	9	328	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ND4--MT-ATP8	6	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0844	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TCCSUP_URINARY_TRACT	1	1	0.0844	FALSE	230	198	14	283	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	RP11-680G10.1--GSE1	5	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0703	0.0141	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TCCSUP_URINARY_TRACT	1	1	0.0844	TRUE	458	1351	185	561	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	CIRBP--ATP5D	5	0	CIRBP	7559	chr19:1269409:+	ATP5D	18377	chr19:1244096:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0703	0	LOCAL_REARRANGEMENT:+:[14560],CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein,ATP5D->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_delta_subunit,chr19:1241749-1244824:+	TCCSUP_URINARY_TRACT	1	1	0.0703	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	CTD-2337A12.1--CAST	5	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0703	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	TCCSUP_URINARY_TRACT	1	1	0.0703	TRUE	347	1186	183	220	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ND4--MT-ATP8	5	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TCCSUP_URINARY_TRACT	1	1	0.0703	FALSE	231	204	14	283	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ND4--MT-ATP8	4	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11253	34	0	0.15	0.0563	0.0281	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TCCSUP_URINARY_TRACT	0	0.15	0.0844	FALSE	231	217	16	283	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ND4--MT-ATP8	4	2	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1978	34	0	0.15	0.0563	0.0281	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TCCSUP_URINARY_TRACT	0	0.15	0.0844	FALSE	216	209	16	281	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	KANSL1--ARL17B	3	5	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	34	45	0.19	0.15	0.0422	0.0703	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	TCCSUP_URINARY_TRACT	0.15	0.19	0.1125	TRUE	105	90	7	93	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	AP003900.6--AC011718.2	4	0	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0563	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	TCCSUP_URINARY_TRACT	1	1	0.0563	TRUE	0	1	0	24	1	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TCCSUP_URINARY_TRACT	1	1	0.0563	FALSE	499	1288	110	792	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TCCSUP_URINARY_TRACT	1	1	0.0563	FALSE	462	80	0	856	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0563	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TCCSUP_URINARY_TRACT	1	1	0.0563	FALSE	292	1546	117	613	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0563	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TCCSUP_URINARY_TRACT	1	1	0.0563	TRUE	465	1949	224	605	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ATP6--MT-CO1	3	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	10249	0	0	1	0.0422	0.0422	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TCCSUP_URINARY_TRACT	0	1	0.0844	FALSE	182	97	9	327	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0.0281	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TCCSUP_URINARY_TRACT	1	1	0.0703	FALSE	462	80	0	856	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	ACTN4--MT-CO1	3	1	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	591	23168	0.01	0	0.0422	0.0141	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TCCSUP_URINARY_TRACT	0	0.01	0.0563	FALSE	0	0	0	30	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10249	23504	0	0	0.0422	0.0141	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TCCSUP_URINARY_TRACT	0	0	0.0563	FALSE	183	104	9	328	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	VTI1A--RP11-57H14.3	3	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	62	0	0.06	1	0.0422	0.0141	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	TCCSUP_URINARY_TRACT	0.06	1	0.0563	FALSE	272	151	14	158	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	CNOT2--ATF5	3	0	CNOT2	2192	chr12:70637965:+	ATF5	39053	chr19:50435954:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,ATF5->Oncogene{Bushman},activating_transcription_factor_5,chr19:50431959-50437192:+	TCCSUP_URINARY_TRACT	1	1	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ATP6--MT-CO1	3	0	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TCCSUP_URINARY_TRACT	1	1	0.0422	FALSE	183	104	9	328	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	MT-ND4--MT-ATP8	3	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TCCSUP_URINARY_TRACT	1	1	0.0422	FALSE	231	204	14	283	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	RP11-319G9.5--WWOX	3	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0422	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	TCCSUP_URINARY_TRACT	1	1	0.0422	FALSE	154	425	28	76	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0.0422	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TCCSUP_URINARY_TRACT	1	1	0.0703	FALSE	407	2205	196	549	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	AP003900.6--AC011718.2	1	6	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0141	0.0844	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	TCCSUP_URINARY_TRACT	1	1	0.0985	TRUE	0	0	0	21	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	CPSF6--CHMP1A	2	1	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	102	272	0.03	0.01	0.0281	0.0141	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	TCCSUP_URINARY_TRACT	0.01	0.03	0.0422	FALSE	95	74	6	34	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	PRR16--CTD-2334D19.1	2	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	20	0	0.13	1	0.0281	0.0141	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	TCCSUP_URINARY_TRACT	0.13	1	0.0422	FALSE	56	216	12	147	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	AP003900.6--AC011718.2	1	4	AP003900.6	2187	chr21:11172043:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0141	0.0563	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	TCCSUP_URINARY_TRACT	1	1	0.0704	TRUE	0	0	0	5	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	AP003900.6--AC011718.2	1	4	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0141	0.0563	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	TCCSUP_URINARY_TRACT	0.83	1	0.0704	TRUE	0	1	0	26	1	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	CCAT1--CASC8	2	0	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	TCCSUP_URINARY_TRACT	1	1	0.0281	TRUE	0	26	0	18	24	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	CD44--BBS9	2	0	CD44	1501	chr11:35160917:+	BBS9	36984	chr7:33217090:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,BBS9->Bardet-Biedl_syndrome_9,chr7:33168856-33645680:+	TCCSUP_URINARY_TRACT	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	GAS6--TFDP1	2	0	GAS6	1499	chr13:114566548:-	TFDP1	22838	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_Transformed_fibroblasts=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	TCCSUP_URINARY_TRACT	1	1	0.0281	TRUE	0	1	0	5	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TCCSUP_URINARY_TRACT	1	1	0.0281	FALSE	25	145	6	90	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	SMARCA5--GAB1	2	0	SMARCA5	4982	chr4:144445620:+	GAB1	46560	chr4:144380538:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	LOCAL_REARRANGEMENT:+:[38895],SMARCA5->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_5,chr4:144434616-144478639:+,GAB1->GRB2_associated_binding_protein_1,Oncogene{Bushman},chr4:144257915-144395721:+	TCCSUP_URINARY_TRACT	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	TEK--IFT74	2	0	TEK	12419	chr9:27192621:+	IFT74	51715	chr9:27055607:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},LOCAL_REARRANGEMENT:+:[46211],TEK->Oncogene{Bushman},TEK_receptor_tyrosine_kinase,chr9:27109139-27230173:+,IFT74->chr9:26947037-27062928:+,intraflagellar_transport_74	TCCSUP_URINARY_TRACT	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	TRIM22--EIF4ENIF1	2	0	TRIM22	8238	chr11:5729833:+	EIF4ENIF1	36532	chr22:31839080:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	TRIM22->chr11:5710919-5758319:+,tripartite_motif_containing_22,EIF4ENIF1->chr22:31832963-31892094:-,eukaryotic_translation_initiation_factor_4E_nuclear_import_factor_1	TCCSUP_URINARY_TRACT	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000720
TCCSUP_URINARY_TRACT	ZC3HAV1L--CHMP1A	2	0	ZC3HAV1L	4872	chr7:138711454:-	CHMP1A	13652	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Thyroid=[count:3=pct:1.7],Colon=[count:2=pct:1.0],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Lung=[count:1=pct:0.6],Skin=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},GTEx_v2:{count=21;pct=0.24%;dist=Thyroid=7,Breast_-_Mammary_Tissue=2,Lung=2,Adipose_-_Visceral_(Omentum)=2,Cells_-_Transformed_fibroblasts=2,Ovary=1,Minor_Salivary_Gland=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},ZC3HAV1L->chr7:138710452-138720775:-,zinc_finger_CCCH-type_containing,_antiviral_1_like,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	TCCSUP_URINARY_TRACT	1	1	0.0281	TRUE	9	17	1	3	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0141	0.0422	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TCCSUP_URINARY_TRACT	1	1	0.0563	FALSE	192	492	57	212	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0141	0.0422	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TCCSUP_URINARY_TRACT	1	1	0.0563	FALSE	467	2173	244	435	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	FAM208B--GDI2	1	1	FAM208B	1338	chr10:5727138:+	GDI2	44467	chr10:5815904:-	ONLY_REF_SPLICE	YES	12	236	0.14	0.01	0.0141	0.0141	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	TCCSUP_URINARY_TRACT	0.01	0.14	0.0282	FALSE	0	0	0	1	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	RP11-268G12.1--CHMP1A	1	1	RP11-268G12.1	1247	chrX:27416868:-	CHMP1A	18697	chr16:89713739:-	ONLY_REF_SPLICE	NO	10	272	0.17	0.01	0.0141	0.0141	RP11-268G12.1->chrX:27193037-27417114:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	TCCSUP_URINARY_TRACT	0.01	0.17	0.0282	FALSE	0	1	0	2	0	FALSE	ACH-000720
TCCSUP_URINARY_TRACT	TMEM223--SLC3A2	1	1	TMEM223	1343	chr11:62559151:-	SLC3A2	16887	chr11:62650380:+	ONLY_REF_SPLICE	YES	103	1287	0.02	0	0.0141	0.0141	LOCAL_INVERSION:-:+:[64025],TMEM223->chr11:62539101-62559493:-,transmembrane_protein_223,SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2	TCCSUP_URINARY_TRACT	0	0.02	0.0282	FALSE	0	1	0	3	0	FALSE	ACH-000720
SW948_LARGE_INTESTINE	MT-TA--MT-TC	70	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.962	0.1099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW948_LARGE_INTESTINE	1	1	1.0719	FALSE	462	80	0	856	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	TIMM23B--LINC00843	37	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5085	0.3024	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SW948_LARGE_INTESTINE	1	1	0.8109	TRUE	508	994	45	981	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	ASMTL--P2RY8	29	12	ASMTL	6526	chrX:1553915:-	P2RY8	21810	chrX:1585475:-	ONLY_REF_SPLICE	YES	156	0	0.21	1	0.3986	0.1649	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_EBV-transformed_lymphocytes=1,Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,NEIGHBORS[8810],ASMTL->acetylserotonin_O-methyltransferase-like,chrX:1522032-1572655:-,chrY:1472032-1522655:-,P2RY8->Oncogene{Bushman},chrX:1581465-1656000:-,chrY:1531465-1606000:-,purinergic_receptor_P2Y8	SW948_LARGE_INTESTINE	0.21	1	0.5635	FALSE	1	14	0	2	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	ZNF654--HMGB2	31	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.426	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SW948_LARGE_INTESTINE	1	1	0.426	TRUE	0	0	0	518	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	TIMM23--RP11-464F9.1	25	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	294	6	0.1	0.84	0.3436	0.0962	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SW948_LARGE_INTESTINE	0.1	0.84	0.4398	TRUE	519	3926	326	965	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	OR51S1--TP53I11	23	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3161	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SW948_LARGE_INTESTINE	1	1	0.3161	TRUE	402	216	10	229	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	ZBTB5--UNC13B	19	13	ZBTB5	1185	chr9:37465212:-	UNC13B	42117	chr9:35403164:+	ONLY_REF_SPLICE	YES	27	168	0.54	0.16	0.2611	0.1787	ZBTB5->chr9:37438111-37465396:-,zinc_finger_and_BTB_domain_containing_5,UNC13B->chr9:35161999-35405335:+,unc-13_homolog_B_(C._elegans)	SW948_LARGE_INTESTINE	0.16	0.54	0.4398	TRUE	0	0	0	1	0	TRUE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ND4L	13	30	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	20	0	0.68	1	0.1787	0.4123	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW948_LARGE_INTESTINE	0.68	1	0.591	FALSE	344	821	44	306	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	57	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	73	0	0.46	1	0.0687	0.7834	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW948_LARGE_INTESTINE	0.46	1	0.8521	FALSE	344	826	44	306	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	60	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	160	0	0.28	1	0.0412	0.8246	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW948_LARGE_INTESTINE	0.28	1	0.8658	FALSE	344	827	44	306	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	58	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	1962	0	0.03	1	0.0412	0.7971	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW948_LARGE_INTESTINE	0.03	1	0.8383	FALSE	344	827	44	306	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	RP11-503C24.1--MLLT4	16	2	RP11-503C24.1	1331	chr6:168595368:+	MLLT4	31716	chr6:168343809:+	ONLY_REF_SPLICE	YES	0	245	1	0.07	0.2199	0.0275	GTEx_FI:{Colon=[count:1=pct:0.5],Testis=[count:1=pct:1.0]},RP11-503C24.1->chr6:168595038-168605181:+,MLLT4->Oncogene{Bushman},chr6:168227602-168372703:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_4	SW948_LARGE_INTESTINE	0.07	1	0.2474	TRUE	2	10	1	3	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	53	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	61	0	0.48	1	0.0412	0.7284	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW948_LARGE_INTESTINE	0.48	1	0.7696	FALSE	344	826	44	306	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-TA--MT-TC	13	9	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1787	0.1237	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW948_LARGE_INTESTINE	1	1	0.3024	FALSE	462	80	0	856	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-TA--MT-TC	12	12	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1649	0.1649	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW948_LARGE_INTESTINE	1	1	0.3298	FALSE	462	80	0	856	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-TA--MT-TY	13	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1787	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SW948_LARGE_INTESTINE	1	1	0.1787	FALSE	13	214	14	42	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	9	14	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.96	0.92	0.1237	0.1924	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW948_LARGE_INTESTINE	0.92	0.96	0.3161	FALSE	515	4851	409	746	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-CO3--MT-ATP6	8	9	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	2	25	0.89	0.4	0.1099	0.1237	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SW948_LARGE_INTESTINE	0.4	0.89	0.2336	FALSE	189	492	56	216	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	29	MT-ND4	1503	chrM:11262:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	1962	1	0.02	0.97	0.0412	0.3986	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW948_LARGE_INTESTINE	0.02	0.97	0.4398	FALSE	344	827	44	306	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	29	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	340	1	0.09	0.97	0.0412	0.3986	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW948_LARGE_INTESTINE	0.09	0.97	0.4398	FALSE	344	827	44	306	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	5	20	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.0687	0.2749	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW948_LARGE_INTESTINE	0.96	1	0.3436	FALSE	407	2205	196	549	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-TA--MT-TC	9	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1237	0.0137	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW948_LARGE_INTESTINE	1	1	0.1374	FALSE	462	80	0	856	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	19	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	14094	0	0	1	0.055	0.2611	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW948_LARGE_INTESTINE	0	1	0.3161	FALSE	328	800	43	304	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	C15orf57--CBX3	7	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	93	59	0.11	0.17	0.0962	0.0687	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SW948_LARGE_INTESTINE	0.11	0.17	0.1649	TRUE	267	562	48	632	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	EEF2--RPS28	8	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	5322	0	0	1	0.1099	0.0137	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SW948_LARGE_INTESTINE	0	1	0.1236	TRUE	0	0	0	100	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ATP6--MT-CO1	8	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	12588	29185	0	0	0.1099	0.0137	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW948_LARGE_INTESTINE	0	0	0.1236	FALSE	183	104	9	328	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	17	MT-CO3	1220	chrM:9426:+	MT-ATP6	4919	chrM:8661:+	INCL_NON_REF_SPLICE	YES	12	13	0.64	0.62	0.055	0.2336	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SW948_LARGE_INTESTINE	0.62	0.64	0.2886	FALSE	189	492	56	216	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	16	MT-CO3	1256	chrM:9462:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	NO	9	51	0.69	0.28	0.055	0.2199	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SW948_LARGE_INTESTINE	0.28	0.69	0.2749	FALSE	189	492	56	216	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	6	7	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0825	0.0962	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SW948_LARGE_INTESTINE	1	1	0.1787	FALSE	81	155	12	160	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	10	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17369	75	0	0.17	0.0687	0.1374	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW948_LARGE_INTESTINE	0	0.17	0.2061	FALSE	231	217	16	283	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-TA--MT-TC	5	10	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0687	0.1374	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW948_LARGE_INTESTINE	1	1	0.2061	FALSE	462	80	0	856	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ATP8	7	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0962	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW948_LARGE_INTESTINE	1	1	0.0962	FALSE	230	198	14	283	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	8	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	21225	0	0	1	0.0687	0.1099	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW948_LARGE_INTESTINE	0	1	0.1786	FALSE	231	217	16	283	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	NPM1P24--SET	7	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0962	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SW948_LARGE_INTESTINE	1	1	0.0962	TRUE	0	0	0	434	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	15	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0.2062	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW948_LARGE_INTESTINE	1	1	0.2474	FALSE	209	205	15	279	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	NRIP1--AF127936.7	6	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	29	0	0.24	1	0.0825	0.0412	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW948_LARGE_INTESTINE	0.24	1	0.1237	FALSE	164	806	69	479	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	C15orf57--CBX3	5	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	93	59	0.11	0.16	0.0687	0.0825	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SW948_LARGE_INTESTINE	0.11	0.16	0.1512	TRUE	267	562	48	632	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	14	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	15	8	0.53	0.68	0.0412	0.1924	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SW948_LARGE_INTESTINE	0.53	0.68	0.2336	FALSE	189	492	56	216	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	6	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	22627	0	0	1	0.0687	0.0825	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW948_LARGE_INTESTINE	0	1	0.1512	FALSE	231	217	16	283	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	22	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0137	0.3024	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW948_LARGE_INTESTINE	1	1	0.3161	FALSE	192	492	57	212	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	13	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	11	7	0.59	0.7	0.0412	0.1787	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SW948_LARGE_INTESTINE	0.59	0.7	0.2199	FALSE	189	492	56	216	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	METTL16--UBB	6	0	METTL16	1133	chr17:2415053:-	UBB	26889	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0825	0	METTL16->chr17:2308856-2415185:-,methyltransferase_like_16,UBB->chr17:16284112-16286059:+,ubiquitin_B	SW948_LARGE_INTESTINE	1	1	0.0825	TRUE	0	0	0	1	0	TRUE	ACH-000680
SW948_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	12	MT-CO3	1126	chrM:9332:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	NO	8	7	0.65	0.68	0.0412	0.1649	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SW948_LARGE_INTESTINE	0.65	0.68	0.2061	FALSE	189	492	56	216	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND3--MT-ATP8	6	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0825	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW948_LARGE_INTESTINE	1	1	0.0825	FALSE	351	233	23	137	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	12	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	16810	0	0	1	0.0412	0.1649	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW948_LARGE_INTESTINE	0	1	0.2061	FALSE	231	215	16	283	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	4	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	321	0	0.03	1	0.0687	0.055	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW948_LARGE_INTESTINE	0.03	1	0.1237	FALSE	344	827	44	306	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-TA--MT-TY	6	0	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0825	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SW948_LARGE_INTESTINE	1	1	0.0825	FALSE	13	214	14	42	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	21506	10	0	0.52	0.055	0.0962	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW948_LARGE_INTESTINE	0	0.52	0.1512	FALSE	231	217	16	283	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	7	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	15852	0	0	1	0.055	0.0962	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW948_LARGE_INTESTINE	0	1	0.1512	FALSE	343	822	44	305	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	7	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10120	0	0	1	0.055	0.0962	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW948_LARGE_INTESTINE	0	1	0.1512	FALSE	344	827	44	306	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	10	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	5	0	0.72	1	0.0412	0.1374	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW948_LARGE_INTESTINE	0.72	1	0.1786	FALSE	344	821	44	306	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	4	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.055	0.055	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SW948_LARGE_INTESTINE	0.73	1	0.11	FALSE	189	492	56	216	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0687	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SW948_LARGE_INTESTINE	1	1	0.0687	FALSE	189	492	56	216	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0687	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW948_LARGE_INTESTINE	1	1	0.0687	FALSE	231	205	14	283	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-TA--MT-TY	5	0	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0687	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SW948_LARGE_INTESTINE	1	1	0.0687	FALSE	13	214	14	42	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	16	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.89	0.0137	0.2199	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW948_LARGE_INTESTINE	0.89	1	0.2336	FALSE	467	2173	244	435	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	7	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	15267	0	0	1	0.0412	0.0962	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW948_LARGE_INTESTINE	0	1	0.1374	FALSE	182	97	9	327	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	3	MT-CO3	1020	chrM:9226:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	1	14	0.88	0.33	0.055	0.0412	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SW948_LARGE_INTESTINE	0.33	0.88	0.0962	FALSE	189	492	56	216	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	7	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	126	0	0.07	1	0.0412	0.0962	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW948_LARGE_INTESTINE	0.07	1	0.1374	FALSE	344	826	44	306	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	7	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	155	0	0.06	1	0.0412	0.0962	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW948_LARGE_INTESTINE	0.06	1	0.1374	FALSE	344	826	44	306	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	7	MT-ND4	1114	chrM:10873:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	34	0	0.23	1	0.0412	0.0962	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW948_LARGE_INTESTINE	0.23	1	0.1374	FALSE	344	826	44	306	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	SAMD5--SASH1	4	2	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	34	1	0.15	0.86	0.055	0.0275	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SW948_LARGE_INTESTINE	0.15	0.86	0.0825	TRUE	53	396	64	110	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	VCP--ACO1	4	2	VCP	1913	chr9:35072334:-	ACO1	20311	chr9:32405483:+	ONLY_REF_SPLICE	YES	536	12	0.01	0.33	0.055	0.0275	VCP->chr9:35056061-35073246:-,valosin_containing_protein,ACO1->aconitase_1,chr9:32384618-32454767:+	SW948_LARGE_INTESTINE	0.01	0.33	0.0825	FALSE	0	0	0	1	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	FTH1--ACTG1	4	0	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SW948_LARGE_INTESTINE	1	1	0.055	TRUE	0	0	0	64	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	4	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	15124	26091	0	0	0.0412	0.055	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW948_LARGE_INTESTINE	0	0	0.0962	FALSE	183	104	9	328	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	4	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.0412	0.055	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SW948_LARGE_INTESTINE	0.7	1	0.0962	FALSE	189	492	56	216	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW948_LARGE_INTESTINE	1	1	0.055	FALSE	230	193	14	283	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND5--MT-ND6	3	3	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0.0412	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SW948_LARGE_INTESTINE	1	1	0.0824	FALSE	26	124	4	93	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	2	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	12	0	0.29	1	0.0412	0.0275	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SW948_LARGE_INTESTINE	0.29	1	0.0687	FALSE	189	492	56	216	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND5--MT-ND6	3	2	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	3	3271	0.62	0	0.0412	0.0275	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SW948_LARGE_INTESTINE	0	0.62	0.0687	FALSE	26	124	4	93	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	12545	28351	0	0	0.0412	0.0137	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW948_LARGE_INTESTINE	0	0	0.0549	FALSE	183	104	9	328	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12514	28838	0	0	0.0412	0.0137	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW948_LARGE_INTESTINE	0	0	0.0549	FALSE	183	104	9	328	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND1--MT-TL1	3	1	MT-ND1	1341	chrM:3647:+	MT-TL1	5012	chrM:3285:+	INCL_NON_REF_SPLICE	YES	18	0	0.18	1	0.0412	0.0137	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SW948_LARGE_INTESTINE	0.18	1	0.0549	FALSE	210	95	5	49	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	NO	15515	0	0	1	0.0412	0.0137	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW948_LARGE_INTESTINE	0	1	0.0549	FALSE	230	193	14	283	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	FTH1--ACTG1	3	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SW948_LARGE_INTESTINE	1	1	0.0412	TRUE	0	0	0	64	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-CO1--SUMO2	3	0	MT-CO1	1592	chrM:6495:+	SUMO2	5567	chr17:73179054:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	SW948_LARGE_INTESTINE	1	1	0.0412	FALSE	0	0	0	12	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND3--MT-ATP8	3	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW948_LARGE_INTESTINE	1	1	0.0412	FALSE	351	233	23	137	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SW948_LARGE_INTESTINE	1	1	0.0412	FALSE	230	198	14	283	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-TA--MT-TY	3	0	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SW948_LARGE_INTESTINE	1	1	0.0412	FALSE	13	214	14	42	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	MT-TA--MT-TY	3	0	MT-TA	1044	chrM:5612:-	MT-TY	4079	chrM:5882:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0412	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SW948_LARGE_INTESTINE	1	1	0.0412	FALSE	13	214	14	42	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0412	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW948_LARGE_INTESTINE	1	1	0.0412	FALSE	292	1546	117	613	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	RP11-680G10.1--GSE1	3	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0412	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW948_LARGE_INTESTINE	1	1	0.0412	TRUE	465	1949	224	605	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	TOPORS--B4GALT1	2	4	TOPORS	2315	chr9:32550772:-	B4GALT1	14098	chr9:33120604:-	ONLY_REF_SPLICE	YES	45	184	0.12	0.03	0.0275	0.055	TOPORS->Oncogene{Bushman},TOP1_binding_arginine/serine_rich_protein,chr9:32540542-32552551:-,B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-	SW948_LARGE_INTESTINE	0.03	0.12	0.0825	TRUE	0	0	0	1	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	PROSC--CHMP1A	2	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	478	470	0.01	0.01	0.0275	0.0137	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	SW948_LARGE_INTESTINE	0.01	0.01	0.0412	FALSE	13	55	3	29	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	AC073283.4--EPCAM	2	0	AC073283.4	1174	chr2:47572040:-	EPCAM	17191	chr2:47600602:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	LOCAL_INVERSION:-:+:[84],AC073283.4->chr2:47419544-47572213:-,EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule	SW948_LARGE_INTESTINE	1	1	0.0275	TRUE	0	1	0	1	0	TRUE	ACH-000680
SW948_LARGE_INTESTINE	CA5B--FAM210B	2	0	CA5B	8332	chrX:15782898:+	FAM210B	27382	chr20:54940143:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	CA5B->carbonic_anhydrase_5B,chrX:15706953-15805747:+,FAM210B->chr20:54933971-54943719:+,family_with_sequence_similarity_210_member_B	SW948_LARGE_INTESTINE	1	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000680
SW948_LARGE_INTESTINE	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SW948_LARGE_INTESTINE	1	1	0.0275	TRUE	347	1186	183	220	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	GAS6--TFDP1	2	0	GAS6	1499	chr13:114566548:-	TFDP1	22838	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0275	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_Transformed_fibroblasts=1},GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	SW948_LARGE_INTESTINE	1	1	0.0275	TRUE	0	1	0	5	0	TRUE	ACH-000680
SW948_LARGE_INTESTINE	NRIP1--AF127936.7	1	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.0137	0.0412	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW948_LARGE_INTESTINE	0.2	1	0.0549	FALSE	125	705	46	456	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	TOPORS--B4GALT1	1	3	TOPORS	2315	chr9:32550772:-	B4GALT1	15286	chr9:33116111:-	ONLY_REF_SPLICE	YES	45	182	0.08	0.02	0.0137	0.0412	TOPORS->Oncogene{Bushman},TOP1_binding_arginine/serine_rich_protein,chr9:32540542-32552551:-,B4GALT1->beta-1,4-galactosyltransferase_1,chr9:33104080-33167354:-	SW948_LARGE_INTESTINE	0.02	0.08	0.0549	TRUE	0	0	0	1	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	AC131097.3--AC093642.5	1	2	AC131097.3	2273	chr2:242824786:+	AC093642.5	12811	chr2:243056790:+	ONLY_REF_SPLICE	NO	1	31	0.75	0.09	0.0137	0.0275	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	SW948_LARGE_INTESTINE	0.09	0.75	0.0412	FALSE	2	37	1	16	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	CTD-2006C1.2--SS18L2	1	1	CTD-2006C1.2	3469	chr19:12112637:+	SS18L2	20690	chr3:42633017:+	ONLY_REF_SPLICE	YES	77	86	0.03	0.02	0.0137	0.0137	CTD-2006C1.2->chr19:12098432-12157090:+,SS18L2->SS18_like_2,chr3:42623332-42636606:+	SW948_LARGE_INTESTINE	0.02	0.03	0.0274	TRUE	0	0	0	1	0	FALSE	ACH-000680
SW948_LARGE_INTESTINE	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0137	0.0137	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SW948_LARGE_INTESTINE	1	1	0.0274	FALSE	93	270	15	244	0	FALSE	ACH-000680
HCC2108_LUNG	TIMM23B--LINC00843	107	36	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2133	0.4082	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC2108_LUNG	1	1	1.6215	TRUE	508	994	45	981	0	FALSE	ACH-000314
HCC2108_LUNG	TIMM23--RP11-464F9.1	55	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	383	5	0.13	0.92	0.6236	0.0454	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC2108_LUNG	0.13	0.92	0.669	TRUE	519	3926	326	965	0	FALSE	ACH-000314
HCC2108_LUNG	RP11-123O10.4--GRIP1	42	17	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4762	0.1928	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC2108_LUNG	1	1	0.669	FALSE	416	2512	207	587	0	FALSE	ACH-000314
HCC2108_LUNG	CENPK--ADAMTS6	33	26	CENPK	14117	chr5:64817302:-	ADAMTS6	38252	chr5:64522046:-	ONLY_REF_SPLICE	YES	68	24	0.46	0.71	0.3742	0.2948	NEIGHBORS[35846],CENPK->centromere_protein_K,chr5:64813593-64858998:-,ADAMTS6->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_6,chr5:64444563-64777747:-	HCC2108_LUNG	0.46	0.71	0.669	FALSE	0	0	0	1	0	FALSE	ACH-000314
HCC2108_LUNG	MT-TA--MT-TC	35	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3969	0.0567	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2108_LUNG	1	1	0.4536	FALSE	462	80	0	856	0	FALSE	ACH-000314
HCC2108_LUNG	AGO2--RP11-429J17.4	16	10	AGO2	16670	chr8:141557567:-	RP11-429J17.4	27489	chr8:144795177:-	ONLY_REF_SPLICE	YES	49	0	0.35	1	0.1814	0.1134	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,RP11-429J17.4->chr8:144791177-144795754:-	HCC2108_LUNG	0.35	1	0.2948	TRUE	0	0	0	1	0	TRUE	ACH-000314
HCC2108_LUNG	AC104389.28--HBE1	18	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2041	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HCC2108_LUNG	1	1	0.2041	TRUE	0	16	0	53	13	FALSE	ACH-000314
HCC2108_LUNG	RP11-680G10.1--GSE1	16	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	59	1	0.23	0.1814	0.0227	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC2108_LUNG	0.23	1	0.2041	TRUE	465	1949	224	605	0	FALSE	ACH-000314
HCC2108_LUNG	RP11-680G10.1--GSE1	15	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	31	1	0.37	0.1701	0.034	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC2108_LUNG	0.37	1	0.2041	TRUE	458	1351	185	561	0	FALSE	ACH-000314
HCC2108_LUNG	FTH1--ACTB	14	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	4495	0	0	1	0.1587	0.0227	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HCC2108_LUNG	0	1	0.1814	TRUE	1	0	0	97	0	FALSE	ACH-000314
HCC2108_LUNG	B3GNTL1--ARL4D	13	5	B3GNTL1	9993	chr17:80962991:-	ARL4D	25423	chr17:41477029:+	ONLY_REF_SPLICE	YES	40	15	0.31	0.55	0.1474	0.0567	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,ARL4D->ADP_ribosylation_factor_like_GTPase_4D,chr17:41476327-41478505:+	HCC2108_LUNG	0.31	0.55	0.2041	TRUE	0	0	0	1	0	TRUE	ACH-000314
HCC2108_LUNG	PLXDC1--TAF13	13	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1474	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCC2108_LUNG	1	1	0.1474	TRUE	7	10	0	216	0	FALSE	ACH-000314
HCC2108_LUNG	PTMA--PTMS	11	2	PTMA	6054	chr2:232576687:+	PTMS	13958	chr12:6879323:+	INCL_NON_REF_SPLICE	YES	3325	663	0	0.02	0.1247	0.0227	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	HCC2108_LUNG	0	0.02	0.1474	TRUE	0	0	0	16	0	FALSE	ACH-000314
HCC2108_LUNG	PTMA--PTMS	10	4	PTMA	6053	chr2:232576686:+	PTMS	13737	chr12:6879102:+	INCL_NON_REF_SPLICE	YES	3303	455	0	0.03	0.1134	0.0454	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	HCC2108_LUNG	0	0.03	0.1588	TRUE	0	0	0	16	0	FALSE	ACH-000314
HCC2108_LUNG	IGFBP4--NPM1	10	3	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	988	2	0.01	0.87	0.1134	0.034	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HCC2108_LUNG	0.01	0.87	0.1474	TRUE	0	0	0	38	0	FALSE	ACH-000314
HCC2108_LUNG	AGO2--RP11-429J17.4	6	11	AGO2	16670	chr8:141557567:-	RP11-429J17.4	27465	chr8:144795201:-	INCL_NON_REF_SPLICE	YES	49	0	0.26	1	0.068	0.1247	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,RP11-429J17.4->chr8:144791177-144795754:-	HCC2108_LUNG	0.26	1	0.1927	TRUE	0	0	0	1	0	TRUE	ACH-000314
HCC2108_LUNG	RP11-96H19.1--RP11-446N19.1	8	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.0907	0.034	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC2108_LUNG	0.85	1	0.1247	FALSE	515	4851	409	746	0	FALSE	ACH-000314
HCC2108_LUNG	CENPK--ADAMTS6	1	27	CENPK	14117	chr5:64817302:-	ADAMTS6	20564	chr5:64769779:-	ONLY_REF_SPLICE	YES	68	34	0.29	0.45	0.0113	0.3061	NEIGHBORS[35846],CENPK->centromere_protein_K,chr5:64813593-64858998:-,ADAMTS6->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_6,chr5:64444563-64777747:-	HCC2108_LUNG	0.29	0.45	0.3174	FALSE	0	0	0	1	0	FALSE	ACH-000314
HCC2108_LUNG	FTH1--ACTB	7	2	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	4780	0	0	1	0.0794	0.0227	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HCC2108_LUNG	0	1	0.1021	TRUE	1	0	0	97	0	FALSE	ACH-000314
HCC2108_LUNG	AC104389.28--HBE1	7	1	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	1	4	0.89	0.67	0.0794	0.0113	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HCC2108_LUNG	0.67	0.89	0.0907	TRUE	0	48	0	65	48	FALSE	ACH-000314
HCC2108_LUNG	RP11-120D5.1--MID1	6	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	19	0.67	0.34	0.068	0.0454	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC2108_LUNG	0.34	0.67	0.1134	FALSE	16	356	14	466	0	FALSE	ACH-000314
HCC2108_LUNG	MT-TA--MT-TC	5	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0.068	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2108_LUNG	1	1	0.1247	FALSE	462	80	0	856	0	FALSE	ACH-000314
HCC2108_LUNG	NRIP1--AF127936.7	5	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	88	0	0.11	1	0.0567	0.068	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC2108_LUNG	0.11	1	0.1247	FALSE	164	806	69	479	0	FALSE	ACH-000314
HCC2108_LUNG	NRIP1--AF127936.7	6	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.068	0.0227	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC2108_LUNG	0.8	1	0.0907	FALSE	292	1546	117	613	0	FALSE	ACH-000314
HCC2108_LUNG	MT-TA--MT-TC	5	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0.0567	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2108_LUNG	1	1	0.1134	FALSE	462	80	0	856	0	FALSE	ACH-000314
HCC2108_LUNG	PTMA--PTMS	5	4	PTMA	6530	chr2:232577163:+	PTMS	13740	chr12:6879105:+	INCL_NON_REF_SPLICE	NO	3058	462	0	0.02	0.0567	0.0454	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	HCC2108_LUNG	0	0.02	0.1021	FALSE	0	0	0	16	0	FALSE	ACH-000314
HCC2108_LUNG	RP11-123O10.4--GRIP1	4	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0454	0.0907	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC2108_LUNG	1	1	0.1361	FALSE	93	270	15	244	0	FALSE	ACH-000314
HCC2108_LUNG	SLC1A5--MT-ND4L	6	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.068	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC2108_LUNG	1	1	0.068	FALSE	0	0	0	189	0	FALSE	ACH-000314
HCC2108_LUNG	AGO2--RP11-429J17.4	5	2	AGO2	16670	chr8:141557567:-	RP11-429J17.4	28563	chr8:144791339:-	ONLY_REF_SPLICE	YES	49	0	0.12	1	0.0567	0.0227	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,RP11-429J17.4->chr8:144791177-144795754:-	HCC2108_LUNG	0.12	1	0.0794	TRUE	0	0	0	1	0	TRUE	ACH-000314
HCC2108_LUNG	TMSB10--TMSB4X	5	2	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	4187	5706	0	0	0.0567	0.0227	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HCC2108_LUNG	0	0	0.0794	FALSE	0	1	0	17	1	FALSE	ACH-000314
HCC2108_LUNG	SPSB1--H6PD	5	0	SPSB1	1192	chr1:9353130:+	H6PD	16626	chr1:9322118:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0567	0	GTEx_FI:{Esophagus=[count:1=pct:0.2],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6]},LOCAL_REARRANGEMENT:+:[21543],SPSB1->chr1:9352939-9429591:+,splA/ryanodine_receptor_domain_and_SOCS_box_containing_1,H6PD->chr1:9294834-9331396:+,hexose-6-phosphate_dehydrogenase/glucose_1-dehydrogenase	HCC2108_LUNG	1	1	0.0567	TRUE	3	8	0	2	0	FALSE	ACH-000314
HCC2108_LUNG	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0454	0.034	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC2108_LUNG	0.88	1	0.0794	FALSE	467	2173	244	435	0	FALSE	ACH-000314
HCC2108_LUNG	NRIP1--AF127936.7	3	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	56	0	0.11	1	0.034	0.0454	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC2108_LUNG	0.11	1	0.0794	FALSE	125	705	46	456	0	FALSE	ACH-000314
HCC2108_LUNG	PTMA--PTMS	3	4	PTMA	6060	chr2:232576693:+	PTMS	13753	chr12:6879118:+	INCL_NON_REF_SPLICE	NO	3639	511	0	0.01	0.034	0.0454	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	HCC2108_LUNG	0	0.01	0.0794	FALSE	0	0	0	16	0	FALSE	ACH-000314
HCC2108_LUNG	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0454	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	HCC2108_LUNG	1	1	0.0454	TRUE	22	156	2	142	0	FALSE	ACH-000314
HCC2108_LUNG	TIMP1--MT-ATP8	4	0	TIMP1	2212	chrX:47442923:+	MT-ATP8	8138	chrM:8425:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0454	0	TIMP1->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_1,chrX:47441712-47446188:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2108_LUNG	1	1	0.0454	FALSE	0	0	0	2	0	FALSE	ACH-000314
HCC2108_LUNG	JSRP1--RPS28	3	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0.0227	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HCC2108_LUNG	1	1	0.0567	TRUE	0	1	0	84	1	FALSE	ACH-000314
HCC2108_LUNG	VIM--TMSB4X	3	2	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	3695	67	0	0.07	0.034	0.0227	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HCC2108_LUNG	0	0.07	0.0567	FALSE	0	0	0	15	0	FALSE	ACH-000314
HCC2108_LUNG	CTD-2337A12.1--CAST	3	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	118	1	0.03	0.034	0.0113	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HCC2108_LUNG	0.03	1	0.0453	TRUE	347	1186	183	220	0	FALSE	ACH-000314
HCC2108_LUNG	FTH1--ACTB	3	1	FTH1	1234	chr11:61734899:-	ACTB	12526	chr7:5569297:-	INCL_NON_REF_SPLICE	YES	4564	146	0	0.03	0.034	0.0113	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HCC2108_LUNG	0	0.03	0.0453	FALSE	1	0	0	97	0	FALSE	ACH-000314
HCC2108_LUNG	RP1-34H18.1--RP11-781A6.1	3	1	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0.0113	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	HCC2108_LUNG	1	1	0.0453	TRUE	94	160	11	37	0	FALSE	ACH-000314
HCC2108_LUNG	AC104389.28--HBE1	3	0	AC104389.28	1084	chr11:5526799:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HCC2108_LUNG	1	1	0.034	TRUE	0	16	0	53	13	FALSE	ACH-000314
HCC2108_LUNG	ELL--FKBP8	3	0	ELL	1207	chr19:18632731:-	FKBP8	21177	chr19:18652805:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	GTEx_FI:{Esophagus=[count:1=pct:0.2],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[9624],ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	HCC2108_LUNG	1	1	0.034	TRUE	2	2	0	6	0	FALSE	ACH-000314
HCC2108_LUNG	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2108_LUNG	1	1	0.034	FALSE	462	80	0	856	0	FALSE	ACH-000314
HCC2108_LUNG	PHLDA1--MT-ND5	3	0	PHLDA1	4204	chr12:76424509:-	MT-ND5	13202	chrM:13052:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	PHLDA1->chr12:76419227-76427712:-,pleckstrin_homology_like_domain_family_A_member_1,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HCC2108_LUNG	1	1	0.034	FALSE	0	0	0	3	0	FALSE	ACH-000314
HCC2108_LUNG	PTMA--PTMS	3	0	PTMA	5448	chr2:232576081:+	PTMS	13428	chr12:6878793:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.034	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	HCC2108_LUNG	1	1	0.034	TRUE	0	0	0	15	0	TRUE	ACH-000314
HCC2108_LUNG	SETD8--CDK2AP1	3	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	HCC2108_LUNG	1	1	0.034	TRUE	0	0	0	18	0	TRUE	ACH-000314
HCC2108_LUNG	PVT1--NSMCE2	2	2	PVT1	1202	chr8:128806980:+	NSMCE2	35590	chr8:126163413:+	ONLY_REF_SPLICE	YES	334	473	0.01	0.01	0.0227	0.0227	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,NSMCE2->NSE2/MMS21_homolog,_SMC5-SMC6_complex_SUMO_ligase,chr8:126103921-126379362:+	HCC2108_LUNG	0.01	0.01	0.0454	FALSE	0	0	0	1	0	FALSE	ACH-000314
HCC2108_LUNG	MINOS1--CAPZB	2	0	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	HCC2108_LUNG	1	1	0.0227	TRUE	2	7	0	21	0	FALSE	ACH-000314
HCC2108_LUNG	ZNF664--EIF4E2	2	0	ZNF664	4564	chr12:124472685:+	EIF4E2	24605	chr2:233428957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0227	0	ZNF664->chr12:124456392-124499986:+,zinc_finger_protein_664,EIF4E2->chr2:233414762-233448354:+,eukaryotic_translation_initiation_factor_4E_family_member_2	HCC2108_LUNG	1	1	0.0227	TRUE	0	0	0	1	0	TRUE	ACH-000314
HCC2108_LUNG	RPSAP52--HMGA2	1	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	4	568	0.43	0.01	0.0113	0.0227	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HCC2108_LUNG	0.01	0.43	0.034	FALSE	0	59	0	125	0	FALSE	ACH-000314
HCC2108_LUNG	AC002066.1--AC073130.1	1	1	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0113	0.0113	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	HCC2108_LUNG	1	1	0.0226	FALSE	0	3	0	33	0	FALSE	ACH-000314
HCC2108_LUNG	ARL8B--ITPR1	1	1	ARL8B	1369	chr3:5164273:+	ITPR1	82367	chr3:4878458:+	ONLY_REF_SPLICE	NO	171	87	0.01	0.02	0.0113	0.0113	ARL8B->ADP_ribosylation_factor_like_GTPase_8B,chr3:5163905-5222596:+,ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1	HCC2108_LUNG	0.01	0.02	0.0226	FALSE	0	1	0	2	1	FALSE	ACH-000314
HCC2108_LUNG	NCOR2--UBC	1	1	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	1	108	0.67	0.02	0.0113	0.0113	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HCC2108_LUNG	0.02	0.67	0.0226	TRUE	145	312	16	51	0	FALSE	ACH-000314
HCC2108_LUNG	PTMA--PTMS	1	1	PTMA	6593	chr2:232577226:+	PTMS	14193	chr12:6879558:+	ONLY_REF_SPLICE	YES	3261	554	0	0	0.0113	0.0113	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	HCC2108_LUNG	0	0	0.0226	FALSE	0	0	0	16	0	FALSE	ACH-000314
HCC2108_LUNG	RP5-1158E12.3--PICALM	1	1	RP5-1158E12.3	3112	chrX:45708809:-	PICALM	9666	chr11:85742653:-	ONLY_REF_SPLICE	NO	0	523	1	0	0.0113	0.0113	RP5-1158E12.3->chrX:45707328-45710920:-,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	HCC2108_LUNG	0	1	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000314
PK45H_PANCREAS	TIMM23B--LINC00843	116	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9649	0.2495	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PK45H_PANCREAS	0.99	1	1.2144	TRUE	508	994	45	981	0	FALSE	ACH-000468
PK45H_PANCREAS	TIMM23--RP11-464F9.1	62	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	308	2	0.18	0.97	0.5157	0.0333	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PK45H_PANCREAS	0.18	0.97	0.549	TRUE	519	3926	326	965	0	FALSE	ACH-000468
PK45H_PANCREAS	FKBP3--KLHL28	55	17	FKBP3	5465	chr14:45598997:-	KLHL28	25618	chr14:45398394:-	ONLY_REF_SPLICE	YES	185	7	0.28	0.91	0.4575	0.1414	NEIGHBORS[73278],FKBP3->FK506_binding_protein_3,chr14:45584803-45604522:-,KLHL28->chr14:45393522-45511525:-,kelch_like_family_member_28	PK45H_PANCREAS	0.28	0.91	0.5989	FALSE	0	0	0	1	0	FALSE	ACH-000468
PK45H_PANCREAS	MT-TA--MT-TC	44	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.366	0.0499	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PK45H_PANCREAS	1	1	0.4159	FALSE	462	80	0	856	0	FALSE	ACH-000468
PK45H_PANCREAS	ZNF7--RP11-89K10.1	27	1	ZNF7	2627	chr8:146054475:+	RP11-89K10.1	28905	chr8:127725531:+	ONLY_REF_SPLICE	YES	9	2	0.76	0.93	0.2246	0.0083	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,RP11-89K10.1->chr8:127570120-127725660:+	PK45H_PANCREAS	0.76	0.93	0.2329	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	C15orf57--CBX3	20	17	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	66	65	0.36	0.36	0.1664	0.1414	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PK45H_PANCREAS	0.36	0.36	0.3078	TRUE	267	562	48	632	0	FALSE	ACH-000468
PK45H_PANCREAS	FHOD3--ZCCHC7	22	7	FHOD3	12456	chr18:34205712:+	ZCCHC7	48802	chr9:37302185:+	ONLY_REF_SPLICE	YES	12	17	0.71	0.63	0.183	0.0582	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	PK45H_PANCREAS	0.63	0.71	0.2412	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	MT-ND6--MT-TE	20	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1664	0.0333	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PK45H_PANCREAS	1	1	0.1997	FALSE	499	1288	110	792	0	FALSE	ACH-000468
PK45H_PANCREAS	RP11-680G10.1--GSE1	17	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	39	1	0.33	0.1414	0.0166	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PK45H_PANCREAS	0.33	1	0.158	TRUE	465	1949	224	605	0	FALSE	ACH-000468
PK45H_PANCREAS	MT-CO3--MT-ATP6	7	39	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	6	0	0.88	1	0.0582	0.3244	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PK45H_PANCREAS	0.88	1	0.3826	FALSE	189	492	56	216	0	FALSE	ACH-000468
PK45H_PANCREAS	HSP90AB1--MT-RNR2	15	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2385	0	0.01	1	0.1248	0.025	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PK45H_PANCREAS	0.01	1	0.1498	FALSE	13	9	0	364	0	FALSE	ACH-000468
PK45H_PANCREAS	MT-CO3--MT-ATP6	5	39	MT-CO3	1322	chrM:9528:+	MT-ATP6	5065	chrM:8807:+	INCL_NON_REF_SPLICE	NO	8	92	0.85	0.32	0.0416	0.3244	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PK45H_PANCREAS	0.32	0.85	0.366	FALSE	189	492	56	216	0	FALSE	ACH-000468
PK45H_PANCREAS	MT-ND5--MT-ATP8	14	2	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3	0	0.84	1	0.1164	0.0166	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PK45H_PANCREAS	0.84	1	0.133	FALSE	43	37	8	105	0	FALSE	ACH-000468
PK45H_PANCREAS	RP11-96H19.1--RP11-446N19.1	13	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1081	0.0499	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PK45H_PANCREAS	1	1	0.158	FALSE	407	2205	196	549	0	FALSE	ACH-000468
PK45H_PANCREAS	RP11-680G10.1--GSE1	13	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.73	0.1081	0.025	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PK45H_PANCREAS	0.73	1	0.1331	TRUE	458	1351	185	561	0	FALSE	ACH-000468
PK45H_PANCREAS	MT-CO3--MT-ATP6	4	37	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	0	62	1	0.4	0.0333	0.3078	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PK45H_PANCREAS	0.4	1	0.3411	FALSE	189	492	56	216	0	FALSE	ACH-000468
PK45H_PANCREAS	C15orf57--CBX3	10	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	59	67	0.27	0.25	0.0832	0.0998	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PK45H_PANCREAS	0.25	0.27	0.183	TRUE	267	562	48	632	0	FALSE	ACH-000468
PK45H_PANCREAS	UBE2M--CTC-360P9.4	12	1	UBE2M	2954	chr19:59068259:-	CTC-360P9.4	9345	chr19:32493678:-	ONLY_REF_SPLICE	YES	260	0	0.05	1	0.0998	0.0083	UBE2M->chr19:59067079-59070327:-,ubiquitin_conjugating_enzyme_E2_M,CTC-360P9.4->chr19:32458005-32516697:-	PK45H_PANCREAS	0.05	1	0.1081	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	MT-TA--MT-TC	10	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0832	0.0499	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PK45H_PANCREAS	1	1	0.1331	FALSE	462	80	0	856	0	FALSE	ACH-000468
PK45H_PANCREAS	MT-ND6--MT-TE	6	21	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0.1747	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PK45H_PANCREAS	1	1	0.2246	FALSE	499	1288	110	792	0	FALSE	ACH-000468
PK45H_PANCREAS	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0915	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PK45H_PANCREAS	1	1	0.0915	TRUE	0	0	0	434	0	FALSE	ACH-000468
PK45H_PANCREAS	HSP90AB1--MT-RNR2	10	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2416	0	0.01	1	0.0832	0.025	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PK45H_PANCREAS	0.01	1	0.1082	FALSE	13	9	0	364	0	FALSE	ACH-000468
PK45H_PANCREAS	HSPBP1--GRK5	10	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0832	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	PK45H_PANCREAS	1	1	0.0832	TRUE	1	39	0	134	39	FALSE	ACH-000468
PK45H_PANCREAS	MT-CO3--MT-ATP6	10	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0832	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PK45H_PANCREAS	1	1	0.0832	FALSE	189	492	56	216	0	FALSE	ACH-000468
PK45H_PANCREAS	MT-ND6--MT-TE	9	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0749	0.0333	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PK45H_PANCREAS	1	1	0.1082	FALSE	499	1288	110	792	0	FALSE	ACH-000468
PK45H_PANCREAS	NRIP1--AF127936.7	9	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0749	0.0166	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PK45H_PANCREAS	0.92	1	0.0915	FALSE	292	1546	117	613	0	FALSE	ACH-000468
PK45H_PANCREAS	MT-ND6--MT-TE	5	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0.1248	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PK45H_PANCREAS	1	1	0.1664	FALSE	499	1288	110	792	0	FALSE	ACH-000468
PK45H_PANCREAS	TSC1--RABL5	8	0	TSC1	1062	chr9:135819959:-	RABL5	34422	chr7:100959823:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0	TSC1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:135766735-135820020:-,tuberous_sclerosis_1,RABL5->chr7:100956975-100965104:-	PK45H_PANCREAS	1	1	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	EXT1--RBM17	6	5	EXT1	2769	chr8:119122324:-	RBM17	25449	chr10:6139011:+	ONLY_REF_SPLICE	YES	366	229	0.03	0.05	0.0499	0.0416	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,RBM17->RNA_binding_motif_protein_17,chr10:6130950-6159420:+	PK45H_PANCREAS	0.03	0.05	0.0915	TRUE	0	0	0	1	0	FALSE	ACH-000468
PK45H_PANCREAS	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PK45H_PANCREAS	1	1	0.0582	FALSE	462	80	0	856	0	FALSE	ACH-000468
PK45H_PANCREAS	NPM1P24--SET	7	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0582	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PK45H_PANCREAS	1	1	0.0582	TRUE	0	0	0	434	0	FALSE	ACH-000468
PK45H_PANCREAS	C15orf57--CBX3	3	12	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	59	67	0.2	0.18	0.025	0.0998	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PK45H_PANCREAS	0.18	0.2	0.1248	TRUE	267	562	48	632	0	FALSE	ACH-000468
PK45H_PANCREAS	TSC1--RABL5	6	0	TSC1	1091	chr9:135819930:-	RABL5	34422	chr7:100959823:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0499	0	TSC1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:135766735-135820020:-,tuberous_sclerosis_1,RABL5->chr7:100956975-100965104:-	PK45H_PANCREAS	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	MT-ND6--MT-TE	3	11	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0.0915	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PK45H_PANCREAS	1	1	0.1165	FALSE	499	1288	110	792	0	FALSE	ACH-000468
PK45H_PANCREAS	RP11-386G11.10--MYH9	5	3	RP11-386G11.10	2083	chr12:49522647:+	MYH9	37271	chr22:36691103:-	INCL_NON_REF_SPLICE	YES	1	1683	0.89	0	0.0416	0.025	RP11-386G11.10->chr12:49521565-49541652:+,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	PK45H_PANCREAS	0	0.89	0.0666	FALSE	0	0	0	3	0	FALSE	ACH-000468
PK45H_PANCREAS	NDUFA4--PHF14	5	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	PK45H_PANCREAS	1	1	0.0416	TRUE	19	32	3	60	0	FALSE	ACH-000468
PK45H_PANCREAS	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PK45H_PANCREAS	1	1	0.0416	TRUE	0	0	0	434	0	FALSE	ACH-000468
PK45H_PANCREAS	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0333	0.0166	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PK45H_PANCREAS	0.86	1	0.0499	FALSE	515	4851	409	746	0	FALSE	ACH-000468
PK45H_PANCREAS	DPH6-AS1--RP11-684B21.1	4	1	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	8	0	0.38	1	0.0333	0.0083	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	PK45H_PANCREAS	0.38	1	0.0416	TRUE	17	119	17	33	0	FALSE	ACH-000468
PK45H_PANCREAS	RP11-123O10.4--GRIP1	4	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0333	0.0083	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PK45H_PANCREAS	1	1	0.0416	FALSE	416	2512	207	587	0	FALSE	ACH-000468
PK45H_PANCREAS	CBX5--GNAS	4	0	CBX5	1095	chr12:54673792:-	GNAS	37563	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0333	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},CBX5->chr12:54624724-54673886:-,chromobox_5,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	PK45H_PANCREAS	1	1	0.0333	TRUE	0	1	0	3	1	TRUE	ACH-000468
PK45H_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1046	chrM:14628:-	MT-TE	4575	chrM:14693:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PK45H_PANCREAS	1	1	0.0333	FALSE	499	1288	110	792	0	FALSE	ACH-000468
PK45H_PANCREAS	YWHAE--CRK	4	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0333	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	PK45H_PANCREAS	1	1	0.0333	TRUE	6	50	7	115	0	FALSE	ACH-000468
PK45H_PANCREAS	ZNF7--RP11-89K10.1	4	0	ZNF7	1146	chr8:146052994:+	RP11-89K10.1	28905	chr8:127725531:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0333	0	ZNF7->chr8:146052849-146072894:+,zinc_finger_protein_7,RP11-89K10.1->chr8:127570120-127725660:+	PK45H_PANCREAS	1	1	0.0333	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	BRIP1--MED13	3	2	BRIP1	19565	chr17:59820374:-	MED13	35563	chr17:60112969:-	ONLY_REF_SPLICE	YES	22	28	0.19	0.15	0.025	0.0166	LOCAL_REARRANGEMENT:-:[79084],BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-,MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13	PK45H_PANCREAS	0.15	0.19	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	MT-CO3--MT-ATP6	3	2	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	8	0	0.38	1	0.025	0.0166	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PK45H_PANCREAS	0.38	1	0.0416	FALSE	189	492	56	216	0	FALSE	ACH-000468
PK45H_PANCREAS	CTD-2337A12.1--CAST	3	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	115	1	0.03	0.025	0.0083	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	PK45H_PANCREAS	0.03	1	0.0333	TRUE	347	1186	183	220	0	FALSE	ACH-000468
PK45H_PANCREAS	MT-ATP6--MT-CO1	3	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	8436	15015	0	0	0.025	0.0083	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PK45H_PANCREAS	0	0	0.0333	FALSE	183	104	9	328	0	FALSE	ACH-000468
PK45H_PANCREAS	MT-ATP6--MT-CO1	3	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8481	15501	0	0	0.025	0.0083	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PK45H_PANCREAS	0	0	0.0333	FALSE	183	104	9	328	0	FALSE	ACH-000468
PK45H_PANCREAS	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10088	15421	0	0	0.025	0.0083	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PK45H_PANCREAS	0	0	0.0333	FALSE	183	104	9	328	0	FALSE	ACH-000468
PK45H_PANCREAS	MT-ATP6--MT-CO1	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8280	15421	0	0	0.025	0.0083	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PK45H_PANCREAS	0	0	0.0333	FALSE	183	104	9	328	0	FALSE	ACH-000468
PK45H_PANCREAS	NRIP1--AF127936.7	2	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0166	0.0416	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PK45H_PANCREAS	0.7	1	0.0582	FALSE	125	705	46	456	0	FALSE	ACH-000468
PK45H_PANCREAS	PCAT1--RP11-382A18.2	3	1	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.025	0.0083	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	PK45H_PANCREAS	0.8	1	0.0333	TRUE	4	84	1	46	0	FALSE	ACH-000468
PK45H_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PK45H_PANCREAS	1	1	0.025	FALSE	499	1288	110	792	0	FALSE	ACH-000468
PK45H_PANCREAS	FHOD3--ZCCHC7	1	7	FHOD3	12456	chr18:34205712:+	ZCCHC7	49846	chr9:37304185:+	ONLY_REF_SPLICE	NO	12	30	0.4	0.21	0.0083	0.0582	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	PK45H_PANCREAS	0.21	0.4	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	NRIP1--AF127936.7	1	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.67	1	0.0083	0.0582	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PK45H_PANCREAS	0.67	1	0.0665	FALSE	164	806	69	479	0	FALSE	ACH-000468
PK45H_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0083	0.0582	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PK45H_PANCREAS	1	1	0.0665	FALSE	192	492	57	212	0	FALSE	ACH-000468
PK45H_PANCREAS	CTD-2337A12.1--CAST	2	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	154	1	0.02	0.0166	0.0083	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	PK45H_PANCREAS	0.02	1	0.0249	TRUE	15	36	8	26	0	FALSE	ACH-000468
PK45H_PANCREAS	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0.0083	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PK45H_PANCREAS	1	1	0.0249	FALSE	93	270	15	244	0	FALSE	ACH-000468
PK45H_PANCREAS	ANKRD16--UCN3	2	0	ANKRD16	4103	chr10:5927686:-	UCN3	15056	chr10:5415678:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	ANKRD16->ankyrin_repeat_domain_16,chr10:5903580-5931869:-,UCN3->chr10:5406972-5416169:+,urocortin_3	PK45H_PANCREAS	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	CCDC122--ENOX1	2	0	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	PK45H_PANCREAS	1	1	0.0166	FALSE	39	52	2	34	0	FALSE	ACH-000468
PK45H_PANCREAS	CCND1--U2AF2	2	0	CCND1	1425	chr11:69456279:+	U2AF2	18977	chr19:56174972:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,U2AF2->U2_small_nuclear_RNA_auxiliary_factor_2,chr19:56165512-56186081:+	PK45H_PANCREAS	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	PK45H_PANCREAS	1	1	0.0166	TRUE	0	9	0	44	1	FALSE	ACH-000468
PK45H_PANCREAS	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	PK45H_PANCREAS	1	1	0.0166	TRUE	0	6	0	16	3	TRUE	ACH-000468
PK45H_PANCREAS	PRDX5--STIP1	2	0	PRDX5	1299	chr11:64085858:+	STIP1	9628	chr11:63960550:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	PRDX5->chr11:64085560-64089283:+,peroxiredoxin_5,STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1	PK45H_PANCREAS	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	RNF212--VEGFB	2	0	RNF212	3360	chr4:1101040:-	VEGFB	25471	chr11:64004659:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	RNF212->chr4:1050038-1107350:-,ring_finger_protein_212,VEGFB->chr11:64002010-64006259:+,vascular_endothelial_growth_factor_B	PK45H_PANCREAS	1	1	0.0166	TRUE	1	2	0	1	1	TRUE	ACH-000468
PK45H_PANCREAS	RPL23--MED14	2	0	RPL23	1822	chr17:37009275:-	MED14	37236	chrX:40518859:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23,MED14->chrX:40507558-40595110:-,mediator_complex_subunit_14	PK45H_PANCREAS	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	RPSAP52--HMGA2	2	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	PK45H_PANCREAS	1	1	0.0166	FALSE	0	59	0	125	0	FALSE	ACH-000468
PK45H_PANCREAS	SENP2--TRA2B	2	0	SENP2	14349	chr3:185335399:+	TRA2B	37737	chr3:185641772:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	SENP2->SUMO1/sentrin/SMT3_specific_peptidase_2,chr3:185300284-185351339:+,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	PK45H_PANCREAS	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	TBCK--KANSL2	2	0	TBCK	37129	chr4:107037360:-	KANSL2	56557	chr12:49054402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-,KANSL2->KAT8_regulatory_NSL_complex_subunit_2,chr12:49047184-49076021:-	PK45H_PANCREAS	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	EXT1--RP11-536K7.5	1	2	EXT1	2769	chr8:119122324:-	RP11-536K7.5	24662	chr10:6078148:+	ONLY_REF_SPLICE	YES	366	0	0.01	1	0.0083	0.0166	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,RP11-536K7.5->chr10:6067941-6078390:+	PK45H_PANCREAS	0.01	1	0.0249	FALSE	0	0	0	1	0	FALSE	ACH-000468
PK45H_PANCREAS	FHOD3--ZCCHC7	1	2	FHOD3	12456	chr18:34205712:+	ZCCHC7	50972	chr9:37305541:+	ONLY_REF_SPLICE	NO	12	32	0.2	0.09	0.0083	0.0166	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	PK45H_PANCREAS	0.09	0.2	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	ATF2--MTX2	1	1	ATF2	6675	chr2:175994866:-	MTX2	26795	chr2:177161588:+	ONLY_REF_SPLICE	YES	84	167	0.02	0.01	0.0083	0.0083	ATF2->Oncogene{Bushman},activating_transcription_factor_2,chr2:175936978-176033110:-,MTX2->chr2:177134123-177202753:+,metaxin_2	PK45H_PANCREAS	0.01	0.02	0.0166	FALSE	0	1	0	2	0	FALSE	ACH-000468
PK45H_PANCREAS	ATXN1--CTD-2410N18.5	1	1	ATXN1	11220	chr6:16658007:-	CTD-2410N18.5	34707	chr5:133509713:-	ONLY_REF_SPLICE	YES	10	6	0.17	0.25	0.0083	0.0083	ATXN1->ataxin_1,chr6:16299343-16761722:-,CTD-2410N18.5->chr5:133502861-133561762:-	PK45H_PANCREAS	0.17	0.25	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	CD44--PDHX	1	1	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	1127	103	0	0.02	0.0083	0.0083	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	PK45H_PANCREAS	0	0.02	0.0166	FALSE	0	20	0	35	2	FALSE	ACH-000468
PK45H_PANCREAS	CRIM1--FEZ2	1	1	CRIM1	18863	chr2:36749456:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	287	168	0.01	0.01	0.0083	0.0083	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	PK45H_PANCREAS	0.01	0.01	0.0166	FALSE	2	2	0	15	0	FALSE	ACH-000468
PK45H_PANCREAS	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	7488	chr5:95966789:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	115	1	0.02	0.0083	0.0083	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	PK45H_PANCREAS	0.02	1	0.0166	TRUE	18	50	10	12	0	FALSE	ACH-000468
PK45H_PANCREAS	DYNC1I1--JAZF1-AS1	1	1	DYNC1I1	10897	chr7:95499310:+	JAZF1-AS1	32168	chr7:28256862:+	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0083	0.0083	DYNC1I1->chr7:95401866-95739634:+,dynein_cytoplasmic_1_intermediate_chain_1,JAZF1-AS1->JAZF1_antisense_RNA_1,chr7:28219941-28283536:+	PK45H_PANCREAS	0.2	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	PHF17--SKIL	1	1	PHF17	1254	chr4:129731032:+	SKIL	27693	chr3:170077487:+	ONLY_REF_SPLICE	YES	14	18	0.12	0.1	0.0083	0.0083	PHF17->chr4:129730779-129796379:+,SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+	PK45H_PANCREAS	0.1	0.12	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000468
PK45H_PANCREAS	PVRL3--CD96	1	1	PVRL3	17322	chr3:110866331:+	CD96	24930	chr3:111083360:+	ONLY_REF_SPLICE	YES	28	0	0.07	1	0.0083	0.0083	PROTCLUST,NEIGHBORS[17156],PVRL3->chr3:110788918-110994410:+,CD96->CD96_molecule,chr3:111011566-111384597:+	PK45H_PANCREAS	0.07	1	0.0166	FALSE	0	0	0	2	0	FALSE	ACH-000468
PK45H_PANCREAS	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0083	0.0083	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	PK45H_PANCREAS	1	1	0.0166	FALSE	81	155	12	160	0	FALSE	ACH-000468
PK45H_PANCREAS	SMARCA4--AP2A1	1	1	SMARCA4	37709	chr19:11152236:+	AP2A1	47934	chr19:50285014:+	ONLY_REF_SPLICE	YES	130	159	0.02	0.01	0.0083	0.0083	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,AP2A1->adaptor_related_protein_complex_2_alpha_1_subunit,chr19:50270225-50310370:+	PK45H_PANCREAS	0.01	0.02	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000468
PK45H_PANCREAS	SUN1--C7orf50	1	1	SUN1	23266	chr7:905704:+	C7orf50	49705	chr7:1049779:-	ONLY_REF_SPLICE	YES	588	578	0	0	0.0083	0.0083	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Colon_-_Transverse=1},SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	PK45H_PANCREAS	0	0	0.0166	FALSE	1	1	0	1	0	FALSE	ACH-000468
PK45H_PANCREAS	TEAD1--PARVA	1	1	TEAD1	2140	chr11:12697108:+	PARVA	32787	chr11:12495292:+	ONLY_REF_SPLICE	YES	52	257	0.04	0.01	0.0083	0.0083	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	PK45H_PANCREAS	0.01	0.04	0.0166	FALSE	0	2	0	5	2	FALSE	ACH-000468
PK45H_PANCREAS	TEAD1--PARVA	1	1	TEAD1	4496	chr11:12785981:+	PARVA	32787	chr11:12495292:+	ONLY_REF_SPLICE	NO	87	257	0.02	0.01	0.0083	0.0083	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	PK45H_PANCREAS	0.01	0.02	0.0166	FALSE	3	5	0	10	0	FALSE	ACH-000468
PK45H_PANCREAS	WWOX--VAT1L	1	1	WWOX	10605	chr16:78198186:+	VAT1L	42429	chr16:78005747:+	ONLY_REF_SPLICE	YES	22	0	0.08	1	0.0083	0.0083	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	PK45H_PANCREAS	0.08	1	0.0166	TRUE	0	0	0	6	0	TRUE	ACH-000468
RERFLCAI_LUNG	MAPRE1--BPI	137	26	MAPRE1	2260	chr20:31413854:+	BPI	25283	chr20:36946815:+	ONLY_REF_SPLICE	YES	397	0	0.29	1	1.4161	0.2687	MAPRE1->Oncogene{Bushman},chr20:31407699-31438211:+,microtubule_associated_protein_RP/EB_family_member_1,BPI->bactericidal/permeability-increasing_protein,chr20:36888551-36965907:+	RERFLCAI_LUNG	0.29	1	1.6848	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	TIMM23B--LINC00843	97	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0026	0.1757	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RERFLCAI_LUNG	1	1	1.1783	TRUE	508	994	45	981	0	FALSE	ACH-000261
RERFLCAI_LUNG	RNF121--RP11-843A23.1	83	2	RNF121	1424	chr11:71640170:+	RP11-843A23.1	18218	chr11:78257555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.8579	0.0207	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,RP11-843A23.1->chr11:78244222-78269611:+	RERFLCAI_LUNG	1	1	0.8786	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	MT-TA--MT-TC	57	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5892	0.0517	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCAI_LUNG	1	1	0.6409	FALSE	462	80	0	856	0	FALSE	ACH-000261
RERFLCAI_LUNG	TIMM23--RP11-464F9.1	56	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	183	2	0.24	0.97	0.5788	0.0207	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RERFLCAI_LUNG	0.24	0.97	0.5995	TRUE	519	3926	326	965	0	FALSE	ACH-000261
RERFLCAI_LUNG	ZNF654--HMGB2	49	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5065	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RERFLCAI_LUNG	1	1	0.5065	TRUE	0	0	0	518	0	FALSE	ACH-000261
RERFLCAI_LUNG	RP11-680G10.1--GSE1	26	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	16	1	0.64	0.2687	0.031	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RERFLCAI_LUNG	0.64	1	0.2997	TRUE	465	1949	224	605	0	FALSE	ACH-000261
RERFLCAI_LUNG	HSP90AB1--MT-RNR2	25	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2274	0	0.01	1	0.2584	0.0103	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCAI_LUNG	0.01	1	0.2687	FALSE	13	9	0	364	0	FALSE	ACH-000261
RERFLCAI_LUNG	FOXP1--FAM188A	24	0	FOXP1	5088	chr3:71542577:-	FAM188A	64050	chr10:15824225:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2481	0	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,FAM188A->chr10:15820169-15902519:-,family_with_sequence_similarity_188_member_A	RERFLCAI_LUNG	1	1	0.2481	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	RP11-680G10.1--GSE1	21	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	11	1	0.69	0.2171	0.0413	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RERFLCAI_LUNG	0.69	1	0.2584	TRUE	458	1351	185	561	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	21	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	9088	6	0	0.79	0.2171	0.0207	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.79	0.2378	FALSE	230	193	14	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND6--MT-TE	20	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2067	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAI_LUNG	1	1	0.2067	FALSE	499	1288	110	792	0	FALSE	ACH-000261
RERFLCAI_LUNG	GATA4--CTD-2647L4.1	17	2	GATA4	7758	chr8:11566437:+	CTD-2647L4.1	21057	chr8:28997958:+	ONLY_REF_SPLICE	YES	3	5	0.86	0.79	0.1757	0.0207	GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+,CTD-2647L4.1->chr8:28968090-28998246:+	RERFLCAI_LUNG	0.79	0.86	0.1964	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	RNF121--RP11-843A23.1	17	0	RNF121	1424	chr11:71640170:+	RP11-843A23.1	19350	chr11:78266261:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1757	0	RNF121->chr11:71639747-71708643:+,ring_finger_protein_121,RP11-843A23.1->chr11:78244222-78269611:+	RERFLCAI_LUNG	1	1	0.1757	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	15	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10460	6	0	0.74	0.155	0.0207	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.74	0.1757	FALSE	231	205	14	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND6--MT-TE	13	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1344	0.0724	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAI_LUNG	1	1	0.2068	FALSE	499	1288	110	792	0	FALSE	ACH-000261
RERFLCAI_LUNG	PGM2L1--FCHSD2	12	2	PGM2L1	5591	chr11:74079537:-	FCHSD2	28338	chr11:72726930:-	ONLY_REF_SPLICE	YES	2	20	0.88	0.41	0.124	0.0207	PGM2L1->chr11:74041363-74109518:-,phosphoglucomutase_2-like_1,FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-	RERFLCAI_LUNG	0.41	0.88	0.1447	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	RP11-123O10.4--GRIP1	11	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.1137	0.0517	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RERFLCAI_LUNG	0.94	1	0.1654	FALSE	416	2512	207	587	0	FALSE	ACH-000261
RERFLCAI_LUNG	HSP90AB1--MT-RNR2	11	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2282	0	0.01	1	0.1137	0.0103	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCAI_LUNG	0.01	1	0.124	FALSE	13	9	0	364	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	10	5	MT-ND4	2053	chrM:11812:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9131	27	0	0.36	0.1034	0.0517	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.36	0.1551	FALSE	231	215	16	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	10	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9019	6	0	0.67	0.1034	0.0207	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.67	0.1241	FALSE	230	198	14	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	RP11-96H19.1--RP11-446N19.1	9	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.93	0.93	0.093	0.0517	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCAI_LUNG	0.93	0.93	0.1447	FALSE	515	4851	409	746	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	9	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11332	1	0	0.93	0.093	0.0413	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.93	0.1343	FALSE	231	217	16	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND6--MT-TE	10	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1034	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAI_LUNG	1	1	0.1034	FALSE	499	1288	110	792	0	FALSE	ACH-000261
RERFLCAI_LUNG	MAPRE1--BPI	5	19	MAPRE1	2260	chr20:31413854:+	BPI	26744	chr20:36948585:+	ONLY_REF_SPLICE	YES	397	0	0.06	1	0.0517	0.1964	MAPRE1->Oncogene{Bushman},chr20:31407699-31438211:+,microtubule_associated_protein_RP/EB_family_member_1,BPI->bactericidal/permeability-increasing_protein,chr20:36888551-36965907:+	RERFLCAI_LUNG	0.06	1	0.2481	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	8	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9663	27	0	0.31	0.0827	0.0413	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.31	0.124	FALSE	231	217	16	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	8	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10049	6	0	0.65	0.0827	0.031	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.65	0.1137	FALSE	231	217	16	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MTERFD2--CPS1	8	3	MTERFD2	11529	chr2:242028603:-	CPS1	22223	chr2:211384275:+	ONLY_REF_SPLICE	YES	15	0	0.42	1	0.0827	0.031	MTERFD2->chr2:242011584-242041747:-,CPS1->carbamoyl-phosphate_synthase_1,chr2:211342406-211543831:+	RERFLCAI_LUNG	0.42	1	0.1137	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	7	5	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	9759	1	0	0.92	0.0724	0.0517	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.92	0.1241	FALSE	231	217	16	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	6	5	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	10025	0	0	1	0.062	0.0517	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	1	0.1137	FALSE	231	217	16	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ATP6--MT-CO1	6	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	9831	14392	0	0	0.062	0.0207	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFLCAI_LUNG	0	0	0.0827	FALSE	183	104	9	328	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	5	5	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1889	27	0.01	0.27	0.0517	0.0517	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0.01	0.27	0.1034	FALSE	216	209	16	281	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-TA--MT-TC	4	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0.0724	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCAI_LUNG	1	1	0.1137	FALSE	462	80	0	856	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	4	5	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	9998	4	0	0.69	0.0413	0.0517	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.69	0.093	FALSE	231	217	16	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	HIBCH--MT-CO3	5	0	HIBCH	25800	chr2:191069774:-	MT-CO3	31233	chrM:9249:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	HIBCH->3-hydroxyisobutyryl-CoA_hydrolase,chr2:191054461-191208919:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	RERFLCAI_LUNG	1	1	0.0517	FALSE	0	0	0	1	0	FALSE	ACH-000261
RERFLCAI_LUNG	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RERFLCAI_LUNG	1	1	0.0517	TRUE	0	0	0	518	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	10524	1	0	0.91	0.031	0.0724	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.91	0.1034	FALSE	231	217	16	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ATP6--MT-CO1	4	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9881	14879	0	0	0.0413	0.0207	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFLCAI_LUNG	0	0	0.062	FALSE	183	104	9	328	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ATP6--MT-CO1	4	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11572	14726	0	0	0.0413	0.0207	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFLCAI_LUNG	0	0	0.062	FALSE	183	104	9	328	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1528	chrM:11287:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12956	6	0	0.5	0.0413	0.0207	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.5	0.062	FALSE	231	217	16	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	10093	1440	0	0	0.0413	0.0207	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0	0.062	FALSE	231	217	16	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1441	chrM:11200:+	MT-ATP8	5482	chrM:8469:+	INCL_NON_REF_SPLICE	YES	12104	11	0	0.35	0.0413	0.0207	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.35	0.062	FALSE	231	217	16	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	10497	1653	0	0	0.0413	0.0207	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0	0.062	FALSE	231	205	14	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND6--MT-TE	4	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0413	0.0207	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAI_LUNG	1	1	0.062	FALSE	499	1288	110	792	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND6--MT-TE	3	6	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0.062	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAI_LUNG	1	1	0.093	FALSE	499	1288	110	792	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-TA--MT-TC	3	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0.062	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCAI_LUNG	1	1	0.093	FALSE	462	80	0	856	0	FALSE	ACH-000261
RERFLCAI_LUNG	ARHGAP10--EDNRA	4	1	ARHGAP10	1393	chr4:148653606:+	EDNRA	38515	chr4:148441003:+	ONLY_REF_SPLICE	YES	5	2	0.5	0.71	0.0413	0.0103	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	RERFLCAI_LUNG	0.5	0.71	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	GATA4--CTD-2647L4.1	4	1	GATA4	4565	chr8:11561813:+	CTD-2647L4.1	21057	chr8:28997958:+	ONLY_REF_SPLICE	YES	13	5	0.28	0.5	0.0413	0.0103	GATA4->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_4,chr8:11534468-11617511:+,CTD-2647L4.1->chr8:28968090-28998246:+	RERFLCAI_LUNG	0.28	0.5	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	2326	chrM:12085:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	40	1	0.17	0.031	0.0517	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0.17	1	0.0827	FALSE	209	205	15	279	0	FALSE	ACH-000261
RERFLCAI_LUNG	WTAPP1--RUVBL1	4	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0413	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	RERFLCAI_LUNG	1	1	0.0413	TRUE	9	252	6	66	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ATP6--MT-CO1	3	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2905	15166	0	0	0.031	0.031	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFLCAI_LUNG	0	0	0.062	FALSE	183	104	9	328	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	11721	4	0	0.6	0.031	0.031	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.6	0.062	FALSE	231	205	14	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	12385	4	0	0.6	0.031	0.031	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.6	0.062	FALSE	231	216	16	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-RNR2--MT-TV	3	3	MT-RNR2	1060	chrM:1730:+	MT-TV	5583	chrM:1625:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.031	0.031	LOCAL_REARRANGEMENT:+:[1],MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA,MT-TV->chrM:1602-1670:+,mitochondrially_encoded_tRNA_valine	RERFLCAI_LUNG	0.86	1	0.062	FALSE	56	134	3	5	0	FALSE	ACH-000261
RERFLCAI_LUNG	HSP90AB1--MT-RNR2	3	2	HSP90AB1	7266	chr6:44221089:+	MT-RNR2	10831	chrM:1704:+	INCL_NON_REF_SPLICE	YES	2312	0	0	1	0.031	0.0207	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCAI_LUNG	0	1	0.0517	FALSE	13	9	0	364	0	FALSE	ACH-000261
RERFLCAI_LUNG	KAT6B--RP11-641D5.2	3	2	KAT6B	5638	chr10:76603236:+	RP11-641D5.2	35333	chr3:169187933:+	ONLY_REF_SPLICE	YES	17	0	0.23	1	0.031	0.0207	KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B,RP11-641D5.2->chr3:169165655-169194840:+	RERFLCAI_LUNG	0.23	1	0.0517	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	9867	12655	0	0	0.031	0.0207	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFLCAI_LUNG	0	0	0.0517	FALSE	183	104	9	328	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1506	chrM:11265:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	11576	6	0	0.45	0.031	0.0207	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.45	0.0517	FALSE	231	217	16	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1112	chrM:10871:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5504	1	0	0.83	0.031	0.0207	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.83	0.0517	FALSE	230	193	14	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9019	27	0	0.16	0.031	0.0207	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.16	0.0517	FALSE	230	198	14	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1285	chrM:11044:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10597	6	0	0.45	0.031	0.0207	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAI_LUNG	0	0.45	0.0517	FALSE	231	205	14	283	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-ND6--MT-TE	3	2	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0.0207	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAI_LUNG	1	1	0.0517	FALSE	499	1288	110	792	0	FALSE	ACH-000261
RERFLCAI_LUNG	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.89	1	0.0207	0.062	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCAI_LUNG	0.89	1	0.0827	FALSE	407	2205	196	549	0	FALSE	ACH-000261
RERFLCAI_LUNG	USP22--AKAP10	3	2	USP22	3674	chr17:20931855:-	AKAP10	24519	chr17:19871774:-	ONLY_REF_SPLICE	YES	189	60	0.03	0.08	0.031	0.0207	USP22->chr17:20902910-20947073:-,ubiquitin_specific_peptidase_22,AKAP10->A-kinase_anchoring_protein_10,chr17:19807615-19881656:-	RERFLCAI_LUNG	0.03	0.08	0.0517	TRUE	0	0	0	1	0	FALSE	ACH-000261
RERFLCAI_LUNG	FOXP1--FAM188A	3	0	FOXP1	5088	chr3:71542577:-	FAM188A	65122	chr10:15821140:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.031	0	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,FAM188A->chr10:15820169-15902519:-,family_with_sequence_similarity_188_member_A	RERFLCAI_LUNG	1	1	0.031	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	MAPRE1--BPI	1	8	MAPRE1	2260	chr20:31413854:+	BPI	29008	chr20:36952272:+	ONLY_REF_SPLICE	NO	397	4	0.02	0.69	0.0103	0.0827	MAPRE1->Oncogene{Bushman},chr20:31407699-31438211:+,microtubule_associated_protein_RP/EB_family_member_1,BPI->bactericidal/permeability-increasing_protein,chr20:36888551-36965907:+	RERFLCAI_LUNG	0.02	0.69	0.093	TRUE	0	0	0	1	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-CO1--SUMO2	3	0	MT-CO1	1612	chrM:6515:+	SUMO2	5590	chr17:73179031:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	RERFLCAI_LUNG	1	1	0.031	FALSE	0	0	0	12	0	FALSE	ACH-000261
RERFLCAI_LUNG	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.031	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCAI_LUNG	1	1	0.031	FALSE	462	80	0	856	0	FALSE	ACH-000261
RERFLCAI_LUNG	CTPS1--KBTBD2	2	0	CTPS1	4956	chr1:41449128:+	KBTBD2	30869	chr7:32919554:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	CTPS1->CTP_synthase_1,chr1:41445007-41478235:+,KBTBD2->chr7:32907784-32933743:-,kelch_repeat_and_BTB_domain_containing_2	RERFLCAI_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	MLLT6--MSH6	2	0	MLLT6	12141	chr17:36874206:+	MSH6	43723	chr2:48032757:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	MLLT6->Oncogene{Bushman},chr17:36861795-36886056:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_6,MSH6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47922669-48037240:+,mutS_homolog_6	RERFLCAI_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFLCAI_LUNG	1	1	0.0207	FALSE	292	1546	117	613	0	FALSE	ACH-000261
RERFLCAI_LUNG	RABGAP1L--TNN	2	0	RABGAP1L	18286	chr1:174363283:+	TNN	55647	chr1:175046520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	NEIGHBORS[72549],RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,TNN->Oncogene{Bushman},chr1:175036994-175117202:+,tenascin_N	RERFLCAI_LUNG	1	1	0.0207	FALSE	0	0	0	1	0	FALSE	ACH-000261
RERFLCAI_LUNG	TRADD--AKT2	2	0	TRADD	1461	chr16:67193741:-	AKT2	10125	chr19:40788683:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	TRADD->TNFRSF1A_associated_via_death_domain,chr16:67188083-67194201:-,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	RERFLCAI_LUNG	1	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0207	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	RERFLCAI_LUNG	1	1	0.0207	FALSE	272	151	14	158	0	FALSE	ACH-000261
RERFLCAI_LUNG	CAPZA2--SRP9	1	1	CAPZA2	3371	chr7:116502704:+	SRP9	25493	chr1:225965637:+	ONLY_REF_SPLICE	YES	88	51	0.02	0.04	0.0103	0.0103	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	RERFLCAI_LUNG	0.02	0.04	0.0206	TRUE	0	0	0	9	0	FALSE	ACH-000261
RERFLCAI_LUNG	MAPRE1--BPI	1	1	MAPRE1	1136	chr20:31407834:+	BPI	25283	chr20:36946815:+	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0103	0.0103	MAPRE1->Oncogene{Bushman},chr20:31407699-31438211:+,microtubule_associated_protein_RP/EB_family_member_1,BPI->bactericidal/permeability-increasing_protein,chr20:36888551-36965907:+	RERFLCAI_LUNG	0.67	1	0.0206	TRUE	0	0	0	1	0	TRUE	ACH-000261
RERFLCAI_LUNG	R3HDM1--UBXN4	1	1	R3HDM1	1179	chr2:136289203:+	UBXN4	40026	chr2:136505837:+	ONLY_REF_SPLICE	YES	33	181	0.06	0.01	0.0103	0.0103	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[16349],R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+,UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+	RERFLCAI_LUNG	0.01	0.06	0.0206	FALSE	0	0	0	4	0	FALSE	ACH-000261
RERFLCAI_LUNG	RP11-353N4.6--SEC22B	1	1	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	61	339	0.03	0.01	0.0103	0.0103	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	RERFLCAI_LUNG	0.01	0.03	0.0206	FALSE	49	42	7	43	0	FALSE	ACH-000261
STM9101_SOFT_TISSUE	AGMO--MEOX2	222	259	AGMO	13591	chr7:15405139:-	MEOX2	24297	chr7:15652236:-	ONLY_REF_SPLICE	YES	24	1057	0.95	0.31	3.8933	4.5422	LOCAL_REARRANGEMENT:-:[49197],AGMO->alkylglycerol_monooxygenase,chr7:15239943-15601640:-,MEOX2->chr7:15650837-15726437:-,mesenchyme_homeobox_2	STM9101_SOFT_TISSUE	0.31	0.95	8.4355	TRUE	0	1	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	AC007319.1--GDI2	184	57	AC007319.1	1146	chr2:187868092:+	GDI2	24692	chr10:5808258:-	ONLY_REF_SPLICE	YES	0	175	1	0.58	3.2269	0.9996	AC007319.1->chr2:187867947-188419390:+,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	STM9101_SOFT_TISSUE	0.58	1	4.2265	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	MT-TA--MT-TN	111	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.9466	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	STM9101_SOFT_TISSUE	1	1	1.9466	FALSE	369	2501	205	193	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	TIMM23B--LINC00843	92	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6134	0.3683	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	STM9101_SOFT_TISSUE	1	1	1.9817	TRUE	508	994	45	981	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND6--MT-TE	82	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4381	0.0877	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	STM9101_SOFT_TISSUE	1	1	1.5258	FALSE	499	1288	110	792	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	TCF7L1--LRRTM4	67	52	TCF7L1	2041	chr2:85361573:+	LRRTM4	28781	chr2:76976042:-	ONLY_REF_SPLICE	YES	29	0	0.8	1	1.175	0.9119	TCF7L1->chr2:85360533-85537511:+,transcription_factor_7_like_1,LRRTM4->chr2:76974845-77820445:-,leucine_rich_repeat_transmembrane_neuronal_4	STM9101_SOFT_TISSUE	0.8	1	2.0869	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	TIMM23--RP11-464F9.1	69	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	153	4	0.32	0.95	1.2101	0.0701	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	STM9101_SOFT_TISSUE	0.32	0.95	1.2802	TRUE	519	3926	326	965	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	AGMO--MEOX2	1	261	AGMO	13591	chr7:15405139:-	MEOX2	23124	chr7:15666543:-	ONLY_REF_SPLICE	YES	24	849	0.92	0.24	0.0175	4.5773	LOCAL_REARRANGEMENT:-:[49197],AGMO->alkylglycerol_monooxygenase,chr7:15239943-15601640:-,MEOX2->chr7:15650837-15726437:-,mesenchyme_homeobox_2	STM9101_SOFT_TISSUE	0.24	0.92	4.5948	TRUE	0	2	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	FGF2--IL21-AS1	56	24	FGF2	3835	chr4:123813451:+	IL21-AS1	13761	chr4:123541123:+	INCL_NON_REF_SPLICE	YES	112	0	0.42	1	0.9821	0.4209	FGF2->Oncogene{Bushman},chr4:123747863-123819391:+,fibroblast_growth_factor_2,IL21-AS1->IL21_antisense_RNA_1,chr4:123540138-123610311:+	STM9101_SOFT_TISSUE	0.42	1	1.403	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	IP6K1--UBA7	37	91	IP6K1	1189	chr3:49823787:-	UBA7	14675	chr3:49851375:-	INCL_NON_REF_SPLICE	YES	50	0	0.72	1	0.6489	1.5959	LOCAL_REARRANGEMENT:-:[18665],IP6K1->chr3:49761727-49823975:-,inositol_hexakisphosphate_kinase_1,UBA7->Oncogene{Bushman},chr3:49842640-49851379:-,ubiquitin_like_modifier_activating_enzyme_7	STM9101_SOFT_TISSUE	0.72	1	2.2448	TRUE	0	0	0	2	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	SYNPR--PTPRG	47	42	SYNPR	13042	chr3:63466632:+	PTPRG	61647	chr3:62278096:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.8243	0.7366	SYNPR->chr3:63213991-63602597:+,synaptoporin,PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G	STM9101_SOFT_TISSUE	1	1	1.5609	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND6--MT-TE	37	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.93	1	0.6489	0.2806	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	STM9101_SOFT_TISSUE	0.93	1	0.9295	FALSE	499	1288	110	792	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND6--MT-TE	39	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.684	0.0877	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	STM9101_SOFT_TISSUE	1	1	0.7717	FALSE	499	1288	110	792	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-TA--MT-TN	32	22	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5612	0.3858	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	STM9101_SOFT_TISSUE	1	1	0.947	FALSE	369	2501	205	193	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-TA--MT-TC	34	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5963	0.0351	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	STM9101_SOFT_TISSUE	1	1	0.6314	FALSE	462	80	0	856	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	ATG5--RP11-98I9.4	25	18	ATG5	6052	chr6:106727536:-	RP11-98I9.4	15335	chr6:99873100:+	INCL_NON_REF_SPLICE	YES	33	6	0.57	0.88	0.4384	0.3157	ATG5->autophagy_related_5,chr6:106632351-106773666:-,RP11-98I9.4->chr6:99872798-99879249:+	STM9101_SOFT_TISSUE	0.57	0.88	0.7541	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	MT-TA--MT-TN	16	52	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2806	0.9119	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	STM9101_SOFT_TISSUE	1	1	1.1925	FALSE	369	2501	205	193	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-TA--MT-TN	22	16	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3858	0.2806	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	STM9101_SOFT_TISSUE	1	1	0.6664	FALSE	369	2501	205	193	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	ZNF771--RP11-345J4.8	23	9	ZNF771	1898	chr16:30419515:+	RP11-345J4.8	13741	chr16:29577570:-	ONLY_REF_SPLICE	YES	3	6	0.91	0.84	0.4034	0.1578	ZNF771->chr16:30418618-30440920:+,zinc_finger_protein_771,RP11-345J4.8->chr16:29538889-29606395:-	STM9101_SOFT_TISSUE	0.84	0.91	0.5612	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	MT-TA--MT-TN	25	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4384	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	STM9101_SOFT_TISSUE	1	1	0.4384	FALSE	369	2501	205	193	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-TA--MT-TN	14	42	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2455	0.7366	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	STM9101_SOFT_TISSUE	1	1	0.9821	FALSE	369	2501	205	193	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-TA--MT-TN	5	65	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0877	1.1399	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	STM9101_SOFT_TISSUE	1	1	1.2276	FALSE	369	2501	205	193	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-TA--MT-TC	18	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3157	0.0351	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	STM9101_SOFT_TISSUE	1	1	0.3508	FALSE	462	80	0	856	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND6--MT-TE	12	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2104	0.2981	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	STM9101_SOFT_TISSUE	1	1	0.5085	FALSE	499	1288	110	792	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-TA--MT-TN	5	44	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0877	0.7716	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	STM9101_SOFT_TISSUE	1	1	0.8593	FALSE	369	2501	205	193	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-TA--MT-TN	6	38	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1052	0.6664	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	STM9101_SOFT_TISSUE	1	1	0.7716	FALSE	369	2501	205	193	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND6--MT-TE	15	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2631	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	STM9101_SOFT_TISSUE	1	1	0.2631	FALSE	499	1288	110	792	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	TCF7L1--LRRTM4	1	53	TCF7L1	7682	chr2:85461011:+	LRRTM4	28781	chr2:76976042:-	ONLY_REF_SPLICE	YES	30	0	0.64	1	0.0175	0.9295	TCF7L1->chr2:85360533-85537511:+,transcription_factor_7_like_1,LRRTM4->chr2:76974845-77820445:-,leucine_rich_repeat_transmembrane_neuronal_4	STM9101_SOFT_TISSUE	0.64	1	0.947	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	RP11-123O10.4--GRIP1	12	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2104	0.1403	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	STM9101_SOFT_TISSUE	1	1	0.3507	FALSE	416	2512	207	587	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	RP11-603B24.1--HERC2P3	10	14	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1754	0.2455	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	STM9101_SOFT_TISSUE	1	1	0.4209	TRUE	27	10	1	20	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND3--MT-ATP8	12	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2104	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	STM9101_SOFT_TISSUE	1	1	0.2104	FALSE	351	233	23	137	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND6--MT-TE	6	24	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	5	0	0.86	1	0.1052	0.4209	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	STM9101_SOFT_TISSUE	0.86	1	0.5261	FALSE	499	1288	110	792	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	ATRNL1--TRUB1	10	7	ATRNL1	1679	chr10:116853802:+	TRUB1	47671	chr10:116702404:+	ONLY_REF_SPLICE	YES	9	173	0.65	0.09	0.1754	0.1228	ATRNL1->attractin_like_1,chr10:116853124-117708503:+,TRUB1->TruB_pseudouridine_synthase_family_member_1,chr10:116697952-116737430:+	STM9101_SOFT_TISSUE	0.09	0.65	0.2982	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	LINC01014--KCNMB2	10	4	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	13	0	0.52	1	0.1754	0.0701	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	STM9101_SOFT_TISSUE	0.52	1	0.2455	FALSE	11	60	26	37	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND6--MT-TE	5	24	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.0877	0.4209	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	STM9101_SOFT_TISSUE	0.88	1	0.5086	FALSE	499	1288	110	792	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	TIMELESS--BAZ2A	10	4	TIMELESS	8086	chr12:56822020:-	BAZ2A	23578	chr12:57009391:-	ONLY_REF_SPLICE	YES	58	24	0.19	0.37	0.1754	0.0701	TIMELESS->chr12:56810903-56843187:-,timeless_circadian_clock,BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-	STM9101_SOFT_TISSUE	0.19	0.37	0.2455	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	MT-TA--MT-TN	10	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1754	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	STM9101_SOFT_TISSUE	1	1	0.1754	FALSE	369	2501	205	193	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND6--MT-TE	9	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1578	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	STM9101_SOFT_TISSUE	1	1	0.1578	FALSE	499	1288	110	792	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND6--MT-TE	4	19	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	5	0	0.82	1	0.0701	0.3332	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	STM9101_SOFT_TISSUE	0.82	1	0.4033	FALSE	499	1288	110	792	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-TA--MT-TC	8	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1403	0.0351	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	STM9101_SOFT_TISSUE	1	1	0.1754	FALSE	462	80	0	856	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND6--MT-TE	4	16	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.87	1	0.0701	0.2806	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	STM9101_SOFT_TISSUE	0.87	1	0.3507	FALSE	499	1288	110	792	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	NPM1P24--SET	8	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1403	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	STM9101_SOFT_TISSUE	1	1	0.1403	TRUE	0	0	0	434	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	XXbac-BPG252P9.9--TUBBP2	8	0	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1403	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	STM9101_SOFT_TISSUE	1	1	0.1403	TRUE	0	1	0	48	1	FALSE	ACH-001200
STM9101_SOFT_TISSUE	NAA15--NBEAP1	6	7	NAA15	1377	chr4:140222985:+	NBEAP1	37798	chr15:20876597:-	ONLY_REF_SPLICE	YES	74	1	0.15	0.93	0.1052	0.1228	NAA15->N(alpha)-acetyltransferase_15,_NatA_auxiliary_subunit,chr4:140222609-140341187:+,NBEAP1->Oncogene{Bushman},chr15:20862967-20893737:-,neurobeachin_pseudogene_1	STM9101_SOFT_TISSUE	0.15	0.93	0.228	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	FGF2--IL21-AS1	4	13	FGF2	2749	chr4:123797579:+	IL21-AS1	13761	chr4:123541123:+	ONLY_REF_SPLICE	YES	112	0	0.13	1	0.0701	0.228	FGF2->Oncogene{Bushman},chr4:123747863-123819391:+,fibroblast_growth_factor_2,IL21-AS1->IL21_antisense_RNA_1,chr4:123540138-123610311:+	STM9101_SOFT_TISSUE	0.13	1	0.2981	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND6--MT-TE	6	5	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1052	0.0877	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	STM9101_SOFT_TISSUE	1	1	0.1929	FALSE	499	1288	110	792	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1228	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	STM9101_SOFT_TISSUE	1	1	0.1228	FALSE	462	80	0	856	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	CDK13--YAE1D1	5	1	CDK13	2816	chr7:39991451:+	YAE1D1	30211	chr7:39649216:+	ONLY_REF_SPLICE	YES	46	0	0.12	1	0.0877	0.0175	CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,YAE1D1->Yae1_domain_containing_1,chr7:39605975-39649919:+	STM9101_SOFT_TISSUE	0.12	1	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	ACIN1--SLC7A8	4	4	ACIN1	9044	chr14:23547360:-	SLC7A8	34822	chr14:23609833:-	ONLY_REF_SPLICE	YES	106	1024	0.07	0.01	0.0701	0.0701	LOCAL_REARRANGEMENT:-:[29681],ACIN1->apoptotic_chromatin_condensation_inducer_1,chr14:23527773-23564823:-,SLC7A8->chr14:23594504-23652883:-,solute_carrier_family_7_member_8	STM9101_SOFT_TISSUE	0.01	0.07	0.1402	TRUE	0	0	0	1	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	XXbac-BPG252P9.9--TUBBP2	5	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0877	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	STM9101_SOFT_TISSUE	1	1	0.0877	TRUE	0	1	0	48	1	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND3--MT-ATP8	4	3	MT-ND3	1255	chrM:10313:+	MT-ATP8	4437	chrM:8456:+	INCL_NON_REF_SPLICE	NO	2	0	0.78	1	0.0701	0.0526	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	STM9101_SOFT_TISSUE	0.78	1	0.1227	FALSE	351	233	23	137	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	ATG5--RP11-98I9.4	3	6	ATG5	6052	chr6:106727536:-	RP11-98I9.4	17010	chr6:99878589:+	ONLY_REF_SPLICE	YES	33	13	0.21	0.41	0.0526	0.1052	ATG5->autophagy_related_5,chr6:106632351-106773666:-,RP11-98I9.4->chr6:99872798-99879249:+	STM9101_SOFT_TISSUE	0.21	0.41	0.1578	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	ACIN1--SLC7A8	4	0	ACIN1	3818	chr14:23559731:-	SLC7A8	35899	chr14:23608756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0701	0	LOCAL_REARRANGEMENT:-:[29681],ACIN1->apoptotic_chromatin_condensation_inducer_1,chr14:23527773-23564823:-,SLC7A8->chr14:23594504-23652883:-,solute_carrier_family_7_member_8	STM9101_SOFT_TISSUE	1	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	LINC01014--KCNMB2	3	4	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	13	0	0.35	1	0.0526	0.0701	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	STM9101_SOFT_TISSUE	0.35	1	0.1227	FALSE	12	33	18	33	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND3--MT-ATP8	4	0	MT-ND3	1094	chrM:10152:+	MT-ATP8	4474	chrM:8493:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	STM9101_SOFT_TISSUE	1	1	0.0701	FALSE	351	233	23	137	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND3--MT-ATP8	3	3	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	98	7	0.06	0.46	0.0526	0.0526	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	STM9101_SOFT_TISSUE	0.06	0.46	0.1052	FALSE	351	233	23	137	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	ATRNL1--TRUB1	3	2	ATRNL1	1272	chr10:116853395:+	TRUB1	47671	chr10:116702404:+	ONLY_REF_SPLICE	YES	22	173	0.19	0.03	0.0526	0.0351	ATRNL1->attractin_like_1,chr10:116853124-117708503:+,TRUB1->TruB_pseudouridine_synthase_family_member_1,chr10:116697952-116737430:+	STM9101_SOFT_TISSUE	0.03	0.19	0.0877	TRUE	0	0	0	1	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	CTDSP1--DNM3OS	3	2	CTDSP1	5150	chr2:219267128:+	DNM3OS	12044	chr1:172113577:-	ONLY_REF_SPLICE	YES	61	48	0.08	0.09	0.0526	0.0351	GTEx_FI:{Blood_Vessel=[count:34=pct:9.2],Ovary=[count:11=pct:20.8],Colon=[count:9=pct:4.7],Esophagus=[count:5=pct:1.2],Adipose_Tissue=[count:4=pct:1.3],Breast=[count:4=pct:3.6],Thyroid=[count:4=pct:2.3],Spleen=[count:3=pct:2.7],Lung=[count:3=pct:1.8],Vagina=[count:2=pct:3.6],Uterus=[count:2=pct:4.7],Skin=[count:2=pct:0.6],Prostate=[count:2=pct:3.3],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Testis=[count:1=pct:1.0]},CTDSP1->CTD_small_phosphatase_1,chr2:219262979-219270664:+,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	STM9101_SOFT_TISSUE	0.08	0.09	0.0877	TRUE	71	70	15	9	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND3--MT-ATP8	3	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	STM9101_SOFT_TISSUE	1	1	0.0526	FALSE	351	233	23	137	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND3--MT-ATP8	3	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4444	chrM:8463:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	STM9101_SOFT_TISSUE	1	1	0.0526	FALSE	351	233	23	137	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	STM9101_SOFT_TISSUE	1	1	0.0526	FALSE	499	1288	110	792	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	STM9101_SOFT_TISSUE	1	1	0.0526	FALSE	499	1288	110	792	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	STM9101_SOFT_TISSUE	1	1	0.0526	FALSE	499	1288	110	792	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	STM9101_SOFT_TISSUE	1	1	0.0526	FALSE	499	1288	110	792	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MT-TA--MT-TN	3	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	STM9101_SOFT_TISSUE	1	1	0.0526	FALSE	369	2501	205	193	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	SPRED1--RP11-1008C21.1	3	0	SPRED1	1892	chr15:38545418:+	RP11-1008C21.1	27349	chr15:38332197:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0	SPRED1->chr15:38544527-38649450:+,sprouty_related_EVH1_domain_containing_1,RP11-1008C21.1->chr15:38276967-38354541:+	STM9101_SOFT_TISSUE	1	1	0.0526	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1179	chr6:30691476:-	TUBBP2	4914	chr13:41959179:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	STM9101_SOFT_TISSUE	1	1	0.0526	TRUE	0	1	0	48	1	FALSE	ACH-001200
STM9101_SOFT_TISSUE	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1385	chr6:30691270:-	TUBBP2	4818	chr13:41959275:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	STM9101_SOFT_TISSUE	1	1	0.0526	TRUE	0	1	0	48	1	FALSE	ACH-001200
STM9101_SOFT_TISSUE	ATRNL1--TRUB1	1	7	ATRNL1	2874	chr10:116856596:+	TRUB1	47671	chr10:116702404:+	ONLY_REF_SPLICE	YES	11	173	0.42	0.04	0.0175	0.1228	ATRNL1->attractin_like_1,chr10:116853124-117708503:+,TRUB1->TruB_pseudouridine_synthase_family_member_1,chr10:116697952-116737430:+	STM9101_SOFT_TISSUE	0.04	0.42	0.1403	TRUE	0	0	0	1	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	C17orf76-AS1--ANXA2	2	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	STM9101_SOFT_TISSUE	1	1	0.0351	TRUE	0	0	0	10	0	TRUE	ACH-001200
STM9101_SOFT_TISSUE	MANBA--UBE2D3	2	0	MANBA	1277	chr4:103681875:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	STM9101_SOFT_TISSUE	1	1	0.0351	TRUE	12	9	1	12	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	MIR210HG--DNM3OS	2	0	MIR210HG	1106	chr11:568352:-	DNM3OS	7156	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	HGNC_GENEFAM,MIR210HG->MIR210_host_gene,chr11:565660-568457:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	STM9101_SOFT_TISSUE	1	1	0.0351	TRUE	0	2	0	3	2	TRUE	ACH-001200
STM9101_SOFT_TISSUE	PSMC2--DNAJC2	2	0	PSMC2	3155	chr7:102988228:+	DNAJC2	17857	chr7:102982312:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	NEIGHBORS_OVERLAP:+:-:[619],PSMC2->chr7:102984701-103009842:+,proteasome_26S_subunit,_ATPase_2,DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-	STM9101_SOFT_TISSUE	1	1	0.0351	FALSE	0	0	0	1	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	TIMELESS--BAZ2A	1	4	TIMELESS	8086	chr12:56822020:-	BAZ2A	22440	chr12:57011316:-	ONLY_REF_SPLICE	YES	58	38	0.08	0.12	0.0175	0.0701	TIMELESS->chr12:56810903-56843187:-,timeless_circadian_clock,BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-	STM9101_SOFT_TISSUE	0.08	0.12	0.0876	TRUE	0	0	0	1	0	FALSE	ACH-001200
STM9101_SOFT_TISSUE	ACIN1--SLC7A8	1	1	ACIN1	9044	chr14:23547360:-	SLC7A8	35899	chr14:23608756:-	ONLY_REF_SPLICE	NO	106	1403	0.02	0	0.0175	0.0175	LOCAL_REARRANGEMENT:-:[29681],ACIN1->apoptotic_chromatin_condensation_inducer_1,chr14:23527773-23564823:-,SLC7A8->chr14:23594504-23652883:-,solute_carrier_family_7_member_8	STM9101_SOFT_TISSUE	0	0.02	0.035	FALSE	0	0	0	1	0	FALSE	ACH-001200
SKMES1_LUNG	PPP1CC--HAUS7	134	51	PPP1CC	1287	chr12:111180458:-	HAUS7	23177	chrX:152722686:-	ONLY_REF_SPLICE	YES	105	72	0.64	0.72	1.6682	0.6349	PPP1CC->Oncogene{Bushman},chr12:111157485-111180744:-,protein_phosphatase_1_catalytic_subunit_gamma,HAUS7->HAUS_augmin_like_complex_subunit_7,chrX:152713124-152760978:-	SKMES1_LUNG	0.64	0.72	2.3031	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	IKBKG--OPN1MW2	96	88	IKBKG	1193	chrX:153769606:+	OPN1MW2	24990	chrX:153494297:+	ONLY_REF_SPLICE	YES	29	0	0.86	1	1.1951	1.0956	IKBKG->chrX:153769414-153796782:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_gamma,OPN1MW2->chrX:153485225-153498755:+,opsin_1_(cone_pigments),_medium-wave-sensitive_2	SKMES1_LUNG	0.86	1	2.2907	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	MT-TA--MT-TN	89	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.108	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMES1_LUNG	1	1	1.108	FALSE	369	2501	205	193	0	FALSE	ACH-000665
SKMES1_LUNG	IKBKG--OPN1MW2	53	139	IKBKG	2254	chrX:153770667:+	OPN1MW2	24990	chrX:153494297:+	ONLY_REF_SPLICE	YES	37	0	0.84	1	0.6598	1.7305	IKBKG->chrX:153769414-153796782:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_gamma,OPN1MW2->chrX:153485225-153498755:+,opsin_1_(cone_pigments),_medium-wave-sensitive_2	SKMES1_LUNG	0.84	1	2.3903	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	TIMM23B--LINC00843	83	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0333	0.1992	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKMES1_LUNG	1	1	1.2325	TRUE	508	994	45	981	0	FALSE	ACH-000665
SKMES1_LUNG	KANSL1--ARL17B	68	38	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	30	39	0.78	0.73	0.8466	0.4731	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SKMES1_LUNG	0.73	0.78	1.3197	TRUE	181	1564	124	196	0	FALSE	ACH-000665
SKMES1_LUNG	MT-ND6--MT-TE	51	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6349	0.0373	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMES1_LUNG	1	1	0.6722	FALSE	499	1288	110	792	0	FALSE	ACH-000665
SKMES1_LUNG	MT-TA--MT-TC	47	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5851	0.0498	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMES1_LUNG	1	1	0.6349	FALSE	462	80	0	856	0	FALSE	ACH-000665
SKMES1_LUNG	TIMM23--RP11-464F9.1	45	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5602	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKMES1_LUNG	1	1	0.5602	TRUE	519	3926	326	965	0	FALSE	ACH-000665
SKMES1_LUNG	IKBKG--OPN1MW2	11	115	IKBKG	2189	chrX:153770602:+	OPN1MW2	24990	chrX:153494297:+	ONLY_REF_SPLICE	YES	46	0	0.73	1	0.1369	1.4317	IKBKG->chrX:153769414-153796782:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_gamma,OPN1MW2->chrX:153485225-153498755:+,opsin_1_(cone_pigments),_medium-wave-sensitive_2	SKMES1_LUNG	0.73	1	1.5686	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	WWOX--VAT1L	31	13	WWOX	10605	chr16:78198186:+	VAT1L	42429	chr16:78005747:+	ONLY_REF_SPLICE	YES	11	0	0.8	1	0.3859	0.1618	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	SKMES1_LUNG	0.8	1	0.5477	TRUE	0	0	0	6	0	TRUE	ACH-000665
SKMES1_LUNG	CTD-2008L17.1--RP11-456O19.2	29	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	5	1	0.87	0.97	0.361	0.0498	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SKMES1_LUNG	0.87	0.97	0.4108	FALSE	33	240	4	98	0	FALSE	ACH-000665
SKMES1_LUNG	OR51S1--TP53I11	29	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.361	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SKMES1_LUNG	1	1	0.361	TRUE	402	216	10	229	0	FALSE	ACH-000665
SKMES1_LUNG	IKBKG--OPN1MW2	4	89	IKBKG	2083	chrX:153770496:+	OPN1MW2	24990	chrX:153494297:+	INCL_NON_REF_SPLICE	YES	39	0	0.7	1	0.0498	1.108	IKBKG->chrX:153769414-153796782:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_gamma,OPN1MW2->chrX:153485225-153498755:+,opsin_1_(cone_pigments),_medium-wave-sensitive_2	SKMES1_LUNG	0.7	1	1.1578	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	PPIG--ROCK2	24	5	PPIG	1151	chr2:170441000:+	ROCK2	25459	chr2:11389924:-	ONLY_REF_SPLICE	YES	24	8	0.55	0.78	0.2988	0.0622	PPIG->chr2:170440850-170497916:+,peptidylprolyl_isomerase_G,ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-	SKMES1_LUNG	0.55	0.78	0.361	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	MRPL11--RP11-867G23.10	22	12	MRPL11	4325	chr11:66204821:-	RP11-867G23.10	12417	chr11:66184264:+	ONLY_REF_SPLICE	YES	176	0	0.16	1	0.2739	0.1494	LOCAL_INVERSION:-:+:[17938],MRPL11->chr11:66202546-66234209:-,mitochondrial_ribosomal_protein_L11,RP11-867G23.10->chr11:66176629-66184608:+	SKMES1_LUNG	0.16	1	0.4233	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	HDAC8--PHKA1	21	13	HDAC8	4154	chrX:71787739:-	PHKA1	40482	chrX:71846899:-	ONLY_REF_SPLICE	YES	107	56	0.24	0.38	0.2614	0.1618	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:-:[5711],HDAC8->chrX:71549366-71792953:-,histone_deacetylase_8,PHKA1->chrX:71798664-71934167:-,phosphorylase_kinase,_alpha_1_(muscle)	SKMES1_LUNG	0.24	0.38	0.4232	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	MT-TA--MT-TN	8	52	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0996	0.6474	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMES1_LUNG	1	1	0.747	FALSE	369	2501	205	193	0	FALSE	ACH-000665
SKMES1_LUNG	ZBTB20--LSAMP	19	7	ZBTB20	2150	chr3:114863660:-	LSAMP	53449	chr3:115571464:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.2365	0.0871	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1|PRAD:1],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	SKMES1_LUNG	0.96	1	0.3236	TRUE	0	3	0	1	3	TRUE	ACH-000665
SKMES1_LUNG	IKBKG--OPN1MW2	4	66	IKBKG	1188	chrX:153769601:+	OPN1MW2	24990	chrX:153494297:+	INCL_NON_REF_SPLICE	YES	27	0	0.72	1	0.0498	0.8217	IKBKG->chrX:153769414-153796782:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_gamma,OPN1MW2->chrX:153485225-153498755:+,opsin_1_(cone_pigments),_medium-wave-sensitive_2	SKMES1_LUNG	0.72	1	0.8715	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	CTD-2008L17.1--RP11-456O19.2	17	12	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	5	0	0.85	1	0.2116	0.1494	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SKMES1_LUNG	0.85	1	0.361	FALSE	20	187	4	79	0	FALSE	ACH-000665
SKMES1_LUNG	MT-TA--MT-TN	9	40	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.112	0.498	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMES1_LUNG	1	1	0.61	FALSE	369	2501	205	193	0	FALSE	ACH-000665
SKMES1_LUNG	TXNRD1--CHST11	17	8	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	YES	8	32	0.76	0.44	0.2116	0.0996	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	SKMES1_LUNG	0.44	0.76	0.3112	TRUE	0	2	1	13	2	TRUE	ACH-000665
SKMES1_LUNG	MT-TA--MT-TN	12	27	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1494	0.3361	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMES1_LUNG	1	1	0.4855	FALSE	369	2501	205	193	0	FALSE	ACH-000665
SKMES1_LUNG	MT-TA--MT-TN	14	15	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1743	0.1867	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMES1_LUNG	1	1	0.361	FALSE	369	2501	205	193	0	FALSE	ACH-000665
SKMES1_LUNG	MT-ND6--MT-TE	13	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1618	0.1867	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMES1_LUNG	0.97	1	0.3485	FALSE	499	1288	110	792	0	FALSE	ACH-000665
SKMES1_LUNG	MT-ND6--MT-TE	14	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1743	0.0373	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMES1_LUNG	1	1	0.2116	FALSE	499	1288	110	792	0	FALSE	ACH-000665
SKMES1_LUNG	ZBTB20--LSAMP	12	2	ZBTB20	1053	chr3:114866066:-	LSAMP	53449	chr3:115571464:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1494	0.0249	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1|PRAD:1],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	SKMES1_LUNG	1	1	0.1743	TRUE	0	3	0	1	3	TRUE	ACH-000665
SKMES1_LUNG	MT-TC--MT-TY	12	1	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1494	0.0124	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SKMES1_LUNG	1	1	0.1618	FALSE	51	280	19	36	0	FALSE	ACH-000665
SKMES1_LUNG	PLXDC1--TAF13	12	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1494	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SKMES1_LUNG	1	1	0.1494	TRUE	7	10	0	216	0	FALSE	ACH-000665
SKMES1_LUNG	IKBKG--OPN1MW2	3	33	IKBKG	2254	chrX:153770667:+	OPN1MW2	26156	chrX:153496017:+	ONLY_REF_SPLICE	YES	37	64	0.49	0.36	0.0373	0.4108	IKBKG->chrX:153769414-153796782:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_gamma,OPN1MW2->chrX:153485225-153498755:+,opsin_1_(cone_pigments),_medium-wave-sensitive_2	SKMES1_LUNG	0.36	0.49	0.4481	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	MT-TA--MT-TN	11	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1369	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMES1_LUNG	1	1	0.1369	FALSE	369	2501	205	193	0	FALSE	ACH-000665
SKMES1_LUNG	MT-TA--MT-TN	4	26	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0498	0.3237	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMES1_LUNG	1	1	0.3735	FALSE	369	2501	205	193	0	FALSE	ACH-000665
SKMES1_LUNG	CTD-2337A12.1--CAST	10	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	92	1	0.11	0.1245	0.0124	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SKMES1_LUNG	0.11	1	0.1369	TRUE	347	1186	183	220	0	FALSE	ACH-000665
SKMES1_LUNG	MT-TA--MT-TC	9	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.112	0.0498	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMES1_LUNG	1	1	0.1618	FALSE	462	80	0	856	0	FALSE	ACH-000665
SKMES1_LUNG	RP11-96H19.1--RP11-446N19.1	8	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	1	0.8	0.94	0.0996	0.0996	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKMES1_LUNG	0.8	0.94	0.1992	FALSE	515	4851	409	746	0	FALSE	ACH-000665
SKMES1_LUNG	ZBTB20--LSAMP	7	12	ZBTB20	4428	chr3:114790066:-	LSAMP	53449	chr3:115571464:-	ONLY_REF_SPLICE	YES	2	0	0.9	1	0.0871	0.1494	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1|PRAD:1],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	SKMES1_LUNG	0.9	1	0.2365	TRUE	0	0	0	2	0	TRUE	ACH-000665
SKMES1_LUNG	RP11-96H19.1--RP11-446N19.1	7	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.94	0.94	0.0871	0.1245	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKMES1_LUNG	0.94	0.94	0.2116	FALSE	467	2173	244	435	0	FALSE	ACH-000665
SKMES1_LUNG	MT-ND6--MT-TE	7	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0871	0.112	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMES1_LUNG	1	1	0.1991	FALSE	499	1288	110	792	0	FALSE	ACH-000665
SKMES1_LUNG	RP11-123O10.4--GRIP1	9	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.112	0.0124	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKMES1_LUNG	1	1	0.1244	FALSE	416	2512	207	587	0	FALSE	ACH-000665
SKMES1_LUNG	MT-ND4--MT-ATP8	9	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.112	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMES1_LUNG	1	1	0.112	FALSE	230	193	14	283	0	FALSE	ACH-000665
SKMES1_LUNG	RP11-680G10.1--GSE1	8	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	17	1	0.37	0.0996	0.0249	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKMES1_LUNG	0.37	1	0.1245	TRUE	465	1949	224	605	0	FALSE	ACH-000665
SKMES1_LUNG	CHSY3--HSPA8P4	8	0	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0996	0	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	SKMES1_LUNG	1	1	0.0996	FALSE	89	26	1	44	0	FALSE	ACH-000665
SKMES1_LUNG	MT-ATP6--MT-CO2	7	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	46	4	0.19	0.73	0.0871	0.0498	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMES1_LUNG	0.19	0.73	0.1369	FALSE	59	21	0	114	0	FALSE	ACH-000665
SKMES1_LUNG	OXNAD1--FBLN2	7	4	OXNAD1	4251	chr3:16313229:+	FBLN2	27389	chr3:13649562:+	ONLY_REF_SPLICE	YES	25	4	0.31	0.73	0.0871	0.0498	OXNAD1->chr3:16306706-16391806:+,oxidoreductase_NAD_binding_domain_containing_1,FBLN2->chr3:13573824-13679922:+,fibulin_2	SKMES1_LUNG	0.31	0.73	0.1369	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	MT-TA--MT-TN	3	18	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0.2241	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMES1_LUNG	1	1	0.2614	FALSE	369	2501	205	193	0	FALSE	ACH-000665
SKMES1_LUNG	NRIP1--AF127936.7	7	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.69	1	0.0871	0.0249	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKMES1_LUNG	0.69	1	0.112	FALSE	292	1546	117	613	0	FALSE	ACH-000665
SKMES1_LUNG	MT-ATP6--MT-CO2	7	1	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	15	3	0.35	0.73	0.0871	0.0124	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMES1_LUNG	0.35	0.73	0.0995	FALSE	59	21	0	114	0	FALSE	ACH-000665
SKMES1_LUNG	MT-ND4--MT-ATP8	7	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0871	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMES1_LUNG	1	1	0.0871	FALSE	230	198	14	283	0	FALSE	ACH-000665
SKMES1_LUNG	HSP90AB1--MT-RNR2	6	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1783	0	0	1	0.0747	0.0249	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMES1_LUNG	0	1	0.0996	FALSE	13	9	0	364	0	FALSE	ACH-000665
SKMES1_LUNG	PPP1R16A--MROH1	6	2	PPP1R16A	1554	chr8:145703905:+	MROH1	15769	chr8:145215873:+	ONLY_REF_SPLICE	YES	26	0	0.24	1	0.0747	0.0249	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1	SKMES1_LUNG	0.24	1	0.0996	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	MT-ATP6--MT-CO2	6	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	35	3	0.17	0.7	0.0747	0.0124	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMES1_LUNG	0.17	0.7	0.0871	FALSE	59	21	0	114	0	FALSE	ACH-000665
SKMES1_LUNG	IGFBP7--MT-ND4L	6	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKMES1_LUNG	1	1	0.0747	FALSE	1	0	0	30	0	FALSE	ACH-000665
SKMES1_LUNG	MT-ATP6--MT-CO2	5	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	46	2	0.16	0.82	0.0622	0.0498	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMES1_LUNG	0.16	0.82	0.112	FALSE	59	21	0	114	0	FALSE	ACH-000665
SKMES1_LUNG	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMES1_LUNG	1	1	0.0747	FALSE	462	80	0	856	0	FALSE	ACH-000665
SKMES1_LUNG	MT-TA--MT-TC	5	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0622	0.0498	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKMES1_LUNG	1	1	0.112	FALSE	462	80	0	856	0	FALSE	ACH-000665
SKMES1_LUNG	AC004980.7--RP11-1220K2.2	5	3	AC004980.7	2605	chr7:76180839:+	RP11-1220K2.2	40125	chr7:141875452:+	ONLY_REF_SPLICE	YES	7	0	0.53	1	0.0622	0.0373	AC004980.7->chr7:76178677-76257299:+,RP11-1220K2.2->chr7:141811549-141922124:+	SKMES1_LUNG	0.53	1	0.0995	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	RP11-471M2.3--MIR4500HG	5	2	RP11-471M2.3	1749	chr13:88462739:-	MIR4500HG	14934	chr13:88163725:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.88	0.0622	0.0249	RP11-471M2.3->chr13:88459889-88463487:-,MIR4500HG->MIR4500_host_gene,chr13:88079469-88323514:-	SKMES1_LUNG	0.88	1	0.0871	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	RP11-96H19.1--RP11-446N19.1	3	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.0373	0.112	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKMES1_LUNG	0.75	1	0.1493	FALSE	407	2205	196	549	0	FALSE	ACH-000665
SKMES1_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0622	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMES1_LUNG	1	1	0.0622	FALSE	231	217	16	283	0	FALSE	ACH-000665
SKMES1_LUNG	MT-TA--MT-TN	5	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0622	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMES1_LUNG	1	1	0.0622	FALSE	369	2501	205	193	0	FALSE	ACH-000665
SKMES1_LUNG	PPIG--ROCK2	3	8	PPIG	1560	chr2:170441409:+	ROCK2	25459	chr2:11389924:-	ONLY_REF_SPLICE	YES	46	8	0.19	0.58	0.0373	0.0996	PPIG->chr2:170440850-170497916:+,peptidylprolyl_isomerase_G,ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-	SKMES1_LUNG	0.19	0.58	0.1369	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	PRR16--CTD-2334D19.1	4	4	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	14	0	0.36	1	0.0498	0.0498	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKMES1_LUNG	0.36	1	0.0996	FALSE	21	45	1	60	0	FALSE	ACH-000665
SKMES1_LUNG	FLNA--MT-CO2	3	6	FLNA	16638	chrX:153582028:-	MT-CO2	24780	chrM:7591:+	INCL_NON_REF_SPLICE	YES	3723	0	0	1	0.0373	0.0747	FLNA->chrX:153576892-153603006:-,filamin_A,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMES1_LUNG	0	1	0.112	FALSE	0	0	0	5	0	FALSE	ACH-000665
SKMES1_LUNG	HSP90AB1--MT-RNR2	4	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1791	0	0	1	0.0498	0.0249	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKMES1_LUNG	0	1	0.0747	FALSE	13	9	0	364	0	FALSE	ACH-000665
SKMES1_LUNG	MT-ATP6--MT-CO2	3	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	NO	46	4	0.13	0.64	0.0373	0.0498	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SKMES1_LUNG	0.13	0.64	0.0871	FALSE	59	21	0	114	0	FALSE	ACH-000665
SKMES1_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0498	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKMES1_LUNG	1	1	0.0498	FALSE	499	1288	110	792	0	FALSE	ACH-000665
SKMES1_LUNG	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0498	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMES1_LUNG	1	1	0.0498	FALSE	369	2501	205	193	0	FALSE	ACH-000665
SKMES1_LUNG	MT-TC--MT-TY	4	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0498	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SKMES1_LUNG	1	1	0.0498	FALSE	51	280	19	36	0	FALSE	ACH-000665
SKMES1_LUNG	UBL4A--CLIC2	4	0	UBL4A	1134	chrX:153714876:-	CLIC2	9296	chrX:154528458:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	UBL4A->chrX:153712056-153715009:-,ubiquitin_like_4A,CLIC2->chloride_intracellular_channel_2,chrX:154505500-154563966:-	SKMES1_LUNG	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	RP11-120D5.1--MID1	3	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	31	0.75	0.16	0.0373	0.0373	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SKMES1_LUNG	0.16	0.75	0.0746	FALSE	16	356	14	466	0	FALSE	ACH-000665
SKMES1_LUNG	RP11-96H19.1--RP11-446N19.1	1	11	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0124	0.1369	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKMES1_LUNG	0.92	1	0.1493	FALSE	192	492	57	212	0	FALSE	ACH-000665
SKMES1_LUNG	AP000350.4--PKM	3	2	AP000350.4	3755	chr22:24236630:-	PKM	7406	chr15:72523531:-	INCL_NON_REF_SPLICE	YES	0	17	1	0.23	0.0373	0.0249	AP000350.4->chr22:24236613-24241117:-,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	SKMES1_LUNG	0.23	1	0.0622	TRUE	0	0	0	14	0	TRUE	ACH-000665
SKMES1_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	15990	0	0	1	0.0373	0.0124	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMES1_LUNG	0	1	0.0497	FALSE	231	217	16	283	0	FALSE	ACH-000665
SKMES1_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	16246	0	0	1	0.0373	0.0124	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMES1_LUNG	0	1	0.0497	FALSE	231	217	16	283	0	FALSE	ACH-000665
SKMES1_LUNG	PPP1R16A--MROH1	3	1	PPP1R16A	1159	chr8:145703510:+	MROH1	16890	chr8:145218674:+	ONLY_REF_SPLICE	YES	7	18	0.36	0.18	0.0373	0.0124	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1	SKMES1_LUNG	0.18	0.36	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	4	0	0.71	1	0.0124	0.112	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKMES1_LUNG	0.71	1	0.1244	FALSE	275	511	55	178	0	FALSE	ACH-000665
SKMES1_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SKMES1_LUNG	1	1	0.0373	FALSE	230	197	14	283	0	FALSE	ACH-000665
SKMES1_LUNG	MT-TA--MT-TN	3	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMES1_LUNG	1	1	0.0373	FALSE	369	2501	205	193	0	FALSE	ACH-000665
SKMES1_LUNG	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SKMES1_LUNG	1	1	0.0373	FALSE	369	2501	205	193	0	FALSE	ACH-000665
SKMES1_LUNG	AC002066.1--AC073130.1	2	3	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0249	0.0373	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	SKMES1_LUNG	0.71	1	0.0622	FALSE	0	3	0	33	0	FALSE	ACH-000665
SKMES1_LUNG	AC004980.7--RP11-1220K2.2	2	3	AC004980.7	2605	chr7:76180839:+	RP11-1220K2.2	41254	chr7:141883066:+	ONLY_REF_SPLICE	YES	7	1	0.42	0.83	0.0249	0.0373	AC004980.7->chr7:76178677-76257299:+,RP11-1220K2.2->chr7:141811549-141922124:+	SKMES1_LUNG	0.42	0.83	0.0622	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	CTD-2008L17.1--RP11-456O19.2	1	6	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	13011	chr18:53755642:+	ONLY_REF_SPLICE	YES	5	2	0.58	0.78	0.0124	0.0747	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SKMES1_LUNG	0.58	0.78	0.0871	FALSE	0	12	0	8	0	FALSE	ACH-000665
SKMES1_LUNG	PPP1R16A--MROH1	2	2	PPP1R16A	1554	chr8:145703905:+	MROH1	16890	chr8:145218674:+	ONLY_REF_SPLICE	YES	26	18	0.13	0.18	0.0249	0.0249	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1	SKMES1_LUNG	0.13	0.18	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	RP11-353N4.6--SEC22B	2	2	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	97	454	0.04	0.01	0.0249	0.0249	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SKMES1_LUNG	0.01	0.04	0.0498	FALSE	33	36	9	21	0	FALSE	ACH-000665
SKMES1_LUNG	ATRX--PGK1	2	0	ATRX	1235	chrX:77041468:-	PGK1	52000	chrX:77365364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1	SKMES1_LUNG	1	1	0.0249	TRUE	0	1	0	9	0	TRUE	ACH-000665
SKMES1_LUNG	ELP4--WFDC3	2	0	ELP4	10185	chr11:31671769:+	WFDC3	26896	chr20:44387070:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4,WFDC3->WAP_four-disulfide_core_domain_3,chr20:44376583-44420571:-	SKMES1_LUNG	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKMES1_LUNG	1	1	0.0249	FALSE	25	145	6	90	0	FALSE	ACH-000665
SKMES1_LUNG	PRR16--CTD-2334D19.1	1	4	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	5	0	0.5	1	0.0124	0.0498	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKMES1_LUNG	0.5	1	0.0622	FALSE	56	216	12	147	0	FALSE	ACH-000665
SKMES1_LUNG	RP11-190P13.2--GAP43	2	0	RP11-190P13.2	3060	chr3:114981777:+	GAP43	11134	chr3:115394860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	GTEx_FI:{Brain=[count:32=pct:4.9],Nerve=[count:2=pct:1.2],Esophagus=[count:1=pct:0.2]},RP11-190P13.2->chr3:114970043-115004194:+,GAP43->chr3:115342171-115440337:+,growth_associated_protein_43	SKMES1_LUNG	1	1	0.0249	TRUE	22	37	0	1	0	FALSE	ACH-000665
SKMES1_LUNG	ZBTB20--LSAMP	1	4	ZBTB20	4428	chr3:114790066:-	LSAMP	54584	chr3:115561425:-	ONLY_REF_SPLICE	NO	2	14	0.71	0.26	0.0124	0.0498	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1|PRAD:1],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	SKMES1_LUNG	0.26	0.71	0.0622	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	NRIP1--AF127936.7	1	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	26	0	0.13	1	0.0124	0.0373	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKMES1_LUNG	0.13	1	0.0497	FALSE	125	705	46	456	0	FALSE	ACH-000665
SKMES1_LUNG	RP11-680G10.1--GSE1	1	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	3	1	0.57	0.0124	0.0373	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKMES1_LUNG	0.57	1	0.0497	TRUE	458	1351	185	561	0	FALSE	ACH-000665
SKMES1_LUNG	RP11-722M1.1--ARAP2	1	3	RP11-722M1.1	7110	chr4:36500049:-	ARAP2	13528	chr4:36231267:-	ONLY_REF_SPLICE	NO	0	4	1	0.5	0.0124	0.0373	RP11-722M1.1->chr4:36498159-36643522:-,ARAP2->ArfGAP_with_RhoGAP_domain,_ankyrin_repeat_and_PH_domain_2,Oncogene{Bushman},chr4:35949843-36246131:-	SKMES1_LUNG	0.5	1	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	TXNRD1--CHST11	1	3	TXNRD1	27532	chr12:104733051:+	CHST11	40027	chr12:105150727:+	ONLY_REF_SPLICE	YES	8	55	0.33	0.07	0.0124	0.0373	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	SKMES1_LUNG	0.07	0.33	0.0497	TRUE	0	0	0	2	0	TRUE	ACH-000665
SKMES1_LUNG	CTNNB1--ULK4	1	2	CTNNB1	3896	chr3:41241161:+	ULK4	56314	chr3:41723295:-	ONLY_REF_SPLICE	YES	609	1	0	0.75	0.0124	0.0249	GTEx_v2:{count=8;pct=0.09%;dist=Heart_-_Atrial_Appendage=2,Lung=1,Prostate=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Colon_-_Transverse=1},NEIGHBORS_OVERLAP:+:-:[13497],CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	SKMES1_LUNG	0	0.75	0.0373	FALSE	0	0	0	3	0	FALSE	ACH-000665
SKMES1_LUNG	RP11-353N4.6--SEC22B	1	2	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	94	437	0.03	0.01	0.0124	0.0249	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SKMES1_LUNG	0.01	0.03	0.0373	FALSE	49	42	7	43	0	FALSE	ACH-000665
SKMES1_LUNG	RP11-353N4.6--SEC22B	1	2	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	94	454	0.03	0.01	0.0124	0.0249	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SKMES1_LUNG	0.01	0.03	0.0373	FALSE	33	36	9	21	0	FALSE	ACH-000665
SKMES1_LUNG	CYB5B--TANGO6	1	1	CYB5B	3328	chr16:69482047:+	TANGO6	31533	chr16:68961471:+	ONLY_REF_SPLICE	YES	583	24	0	0.08	0.0124	0.0124	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B,TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog	SKMES1_LUNG	0	0.08	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000665
SKMES1_LUNG	G6PD--PLOD3	1	1	G6PD	7528	chrX:153760403:-	PLOD3	16558	chr7:100855936:-	ONLY_REF_SPLICE	YES	3819	164	0	0.01	0.0124	0.0124	G6PD->chrX:153759606-153775787:-,glucose-6-phosphate_dehydrogenase,PLOD3->chr7:100849258-100861701:-,procollagen-lysine,2-oxoglutarate_5-dioxygenase_3	SKMES1_LUNG	0	0.01	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000665
SKMES1_LUNG	KANSL1--ARL17B	1	1	KANSL1	7536	chr17:44248221:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	32	4	0.06	0.33	0.0124	0.0124	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SKMES1_LUNG	0.06	0.33	0.0248	TRUE	16	5	0	9	0	FALSE	ACH-000665
SKMES1_LUNG	LINC01060--RP11-756P10.5	1	1	LINC01060	7782	chr4:189407019:+	RP11-756P10.5	17184	chr4:189705067:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0124	0.0124	NEIGHBORS[95606],LINC01060->chr4:189321890-189602205:+,long_intergenic_non-protein_coding_RNA_1060,RP11-756P10.5->chr4:189697811-189706665:+	SKMES1_LUNG	0.5	1	0.0248	FALSE	1	5	1	2	0	FALSE	ACH-000665
SKMES1_LUNG	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	26	4	0.07	0.33	0.0124	0.0124	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKMES1_LUNG	0.07	0.33	0.0248	FALSE	7	44	2	41	0	FALSE	ACH-000665
SKMES1_LUNG	PPP1R12C--PPP2R3B	1	1	PPP1R12C	8950	chr19:55610152:-	PPP2R3B	22835	chrX:322325:-	ONLY_REF_SPLICE	YES	95	2	0.02	0.5	0.0124	0.0124	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,PPP2R3B->chrX:294698-347690:-,chrY:244698-297690:-,protein_phosphatase_2_regulatory_subunit_B'',_beta	SKMES1_LUNG	0.02	0.5	0.0248	TRUE	0	0	0	1	0	FALSE	ACH-000665
SKMES1_LUNG	PPP1R16A--MROH1	1	1	PPP1R16A	1159	chr8:145703510:+	MROH1	15769	chr8:145215873:+	ONLY_REF_SPLICE	YES	7	0	0.22	1	0.0124	0.0124	PPP1R16A->chr8:145703352-145727504:+,protein_phosphatase_1_regulatory_subunit_16A,MROH1->chr8:145202919-145316843:+,maestro_heat_like_repeat_family_member_1	SKMES1_LUNG	0.22	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000665
SKMES1_LUNG	PRSS23--ME3	1	1	PRSS23	8412	chr11:86534635:+	ME3	26877	chr11:86270865:-	ONLY_REF_SPLICE	YES	132	11	0.01	0.15	0.0124	0.0124	PRSS23->chr11:86502101-86663952:+,protease,_serine_23,ME3->Oncogene{Bushman},chr11:86152150-86383678:-,malic_enzyme_3	SKMES1_LUNG	0.01	0.15	0.0248	FALSE	0	2	0	1	1	FALSE	ACH-000665
SKMES1_LUNG	RP11-722M1.1--RP11-431M7.2	1	1	RP11-722M1.1	7110	chr4:36500049:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0124	0.0124	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	SKMES1_LUNG	1	1	0.0248	TRUE	0	1	0	4	1	TRUE	ACH-000665
SKMES1_LUNG	RP11-722M1.1--RP11-431M7.2	1	1	RP11-722M1.1	4366	chr4:36584279:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0124	0.0124	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	SKMES1_LUNG	0.4	1	0.0248	TRUE	0	1	0	4	1	TRUE	ACH-000665
SKMES1_LUNG	RPLP1--KIF23	1	1	RPLP1	1938	chr15:69746060:+	KIF23	16465	chr15:69721450:+	ONLY_REF_SPLICE	YES	3437	117	0	0.02	0.0124	0.0124	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[4359],RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,KIF23->chr15:69706585-69740764:+,kinesin_family_member_23	SKMES1_LUNG	0	0.02	0.0248	FALSE	0	0	0	5	0	FALSE	ACH-000665
SKMES1_LUNG	TTYH3--PHF13	1	1	TTYH3	1328	chr7:2671912:+	PHF13	21336	chr1:6676817:+	ONLY_REF_SPLICE	YES	134	18	0.01	0.1	0.0124	0.0124	TTYH3->chr7:2671585-2704436:+,tweety_family_member_3,PHF13->PHD_finger_protein_13,chr1:6673745-6684093:+	SKMES1_LUNG	0.01	0.1	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000665
RPMI7951_SKIN	TIMM23B--LINC00843	133	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.4507	0.349	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RPMI7951_SKIN	0.99	1	1.7997	TRUE	508	994	45	981	0	FALSE	ACH-000348
RPMI7951_SKIN	AP003900.6--AC011718.2	84	12	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.9162	0.1309	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	RPMI7951_SKIN	0.99	1	1.0471	TRUE	0	3	0	38	3	FALSE	ACH-000348
RPMI7951_SKIN	TIMM23--RP11-464F9.1	78	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	162	2	0.33	0.98	0.8508	0.0327	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RPMI7951_SKIN	0.33	0.98	0.8835	TRUE	519	3926	326	965	0	FALSE	ACH-000348
RPMI7951_SKIN	MT-TA--MT-TC	47	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5126	0.0218	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RPMI7951_SKIN	1	1	0.5344	FALSE	462	80	0	856	0	FALSE	ACH-000348
RPMI7951_SKIN	GMEB1--RP11-442N24__B.1	40	11	GMEB1	2285	chr1:29010252:+	RP11-442N24__B.1	22049	chr1:28974705:+	ONLY_REF_SPLICE	YES	12	1	0.81	0.98	0.4363	0.12	LOCAL_REARRANGEMENT:+:[20151],GMEB1->chr1:28995244-29045865:+,glucocorticoid_modulatory_element_binding_protein_1,RP11-442N24__B.1->chr1:28969740-28975093:+	RPMI7951_SKIN	0.81	0.98	0.5563	TRUE	0	1	0	2	1	TRUE	ACH-000348
RPMI7951_SKIN	PTPN14--ABHD17AP3	31	14	PTPN14	2267	chr1:214724526:-	ABHD17AP3	43165	chr1:214781827:-	INCL_NON_REF_SPLICE	YES	60	2	0.43	0.96	0.3381	0.1527	LOCAL_REARRANGEMENT:-:[53021],PTPN14->Oncogene{Bushman},chr1:214522039-214725792:-,protein_tyrosine_phosphatase,_non-receptor_type_14,ABHD17AP3->abhydrolase_domain_containing_17A_pseudogene_3,chr1:214778813-214782183:-	RPMI7951_SKIN	0.43	0.96	0.4908	TRUE	0	0	0	2	0	TRUE	ACH-000348
RPMI7951_SKIN	AP003900.6--AC011718.2	17	17	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	4	0	0.89	1	0.1854	0.1854	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	RPMI7951_SKIN	0.89	1	0.3708	TRUE	0	5	0	45	5	FALSE	ACH-000348
RPMI7951_SKIN	C15orf57--CBX3	16	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	32	23	0.48	0.56	0.1745	0.1418	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RPMI7951_SKIN	0.48	0.56	0.3163	TRUE	267	562	48	632	0	FALSE	ACH-000348
RPMI7951_SKIN	AP003900.6--AC011718.2	17	1	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	1	9	0.95	0.67	0.1854	0.0109	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	RPMI7951_SKIN	0.67	0.95	0.1963	TRUE	0	1	0	21	1	FALSE	ACH-000348
RPMI7951_SKIN	ZDHHC15--MAGEA8	16	4	ZDHHC15	1614	chrX:74742724:-	MAGEA8	24717	chrX:149012847:+	ONLY_REF_SPLICE	YES	14	1	0.59	0.95	0.1745	0.0436	ZDHHC15->chrX:74588262-74743337:-,zinc_finger_DHHC-type_containing_15,MAGEA8->MAGE_family_member_A8,chrX:149009941-149014609:+	RPMI7951_SKIN	0.59	0.95	0.2181	TRUE	0	0	0	1	0	TRUE	ACH-000348
RPMI7951_SKIN	AC104389.28--HBE1	16	0	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1745	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	RPMI7951_SKIN	1	1	0.1745	TRUE	0	48	0	65	48	FALSE	ACH-000348
RPMI7951_SKIN	CTD-2008L17.1--RP11-456O19.2	14	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1527	0.0327	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	RPMI7951_SKIN	1	1	0.1854	FALSE	20	187	4	79	0	FALSE	ACH-000348
RPMI7951_SKIN	C15orf57--CBX3	12	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	28	24	0.42	0.45	0.1309	0.0873	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RPMI7951_SKIN	0.42	0.45	0.2182	TRUE	267	562	48	632	0	FALSE	ACH-000348
RPMI7951_SKIN	MT-ND6--MT-TE	12	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1309	0.0764	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RPMI7951_SKIN	1	1	0.2073	FALSE	499	1288	110	792	0	FALSE	ACH-000348
RPMI7951_SKIN	OR51S1--TP53I11	13	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1418	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	RPMI7951_SKIN	1	1	0.1418	TRUE	402	216	10	229	0	FALSE	ACH-000348
RPMI7951_SKIN	AP003900.6--AC011718.2	10	4	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	1	2	0.93	0.88	0.1091	0.0436	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	RPMI7951_SKIN	0.88	0.93	0.1527	TRUE	0	1	0	26	1	FALSE	ACH-000348
RPMI7951_SKIN	MT-ND6--MT-TE	10	2	MT-ND6	1051	chrM:14623:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1091	0.0218	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RPMI7951_SKIN	1	1	0.1309	FALSE	499	1288	110	792	0	FALSE	ACH-000348
RPMI7951_SKIN	ADAM17--YWHAQ	9	3	ADAM17	1284	chr2:9695638:-	YWHAQ	29763	chr2:9731644:-	ONLY_REF_SPLICE	YES	87	1161	0.12	0.01	0.0982	0.0327	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[28180],ADAM17->ADAM_metallopeptidase_domain_17,chr2:9628615-9695921:-,YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta	RPMI7951_SKIN	0.01	0.12	0.1309	TRUE	0	4	0	5	2	TRUE	ACH-000348
RPMI7951_SKIN	MT-ND6--MT-TE	8	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0873	0.0764	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RPMI7951_SKIN	1	1	0.1637	FALSE	499	1288	110	792	0	FALSE	ACH-000348
RPMI7951_SKIN	GMEB1--RP11-442N24__B.1	5	11	GMEB1	2285	chr1:29010252:+	RP11-442N24__B.1	22053	chr1:28974709:+	ONLY_REF_SPLICE	YES	12	1	0.57	0.94	0.0545	0.12	LOCAL_REARRANGEMENT:+:[20151],GMEB1->chr1:28995244-29045865:+,glucocorticoid_modulatory_element_binding_protein_1,RP11-442N24__B.1->chr1:28969740-28975093:+	RPMI7951_SKIN	0.57	0.94	0.1745	TRUE	0	1	0	2	1	TRUE	ACH-000348
RPMI7951_SKIN	CTD-2337A12.1--CAST	7	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	32	1	0.2	0.0764	0.0109	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	RPMI7951_SKIN	0.2	1	0.0873	TRUE	347	1186	183	220	0	FALSE	ACH-000348
RPMI7951_SKIN	AP003900.6--AC011718.2	4	12	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	3	0	0.84	1	0.0436	0.1309	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	RPMI7951_SKIN	0.84	1	0.1745	TRUE	0	0	0	21	0	FALSE	ACH-000348
RPMI7951_SKIN	DNAJC25--UGCG	7	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0764	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	RPMI7951_SKIN	1	1	0.0764	TRUE	50	73	10	50	0	FALSE	ACH-000348
RPMI7951_SKIN	AP003900.6--AC011718.2	5	4	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	4	9	0.69	0.5	0.0545	0.0436	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	RPMI7951_SKIN	0.5	0.69	0.0981	TRUE	0	1	0	24	1	FALSE	ACH-000348
RPMI7951_SKIN	SLC1A5--MT-ND4L	6	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0654	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RPMI7951_SKIN	1	1	0.0654	FALSE	0	0	0	189	0	FALSE	ACH-000348
RPMI7951_SKIN	CTD-2008L17.1--RP11-456O19.2	5	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0545	0.0109	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	RPMI7951_SKIN	1	1	0.0654	FALSE	33	240	4	98	0	FALSE	ACH-000348
RPMI7951_SKIN	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0545	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RPMI7951_SKIN	1	1	0.0545	FALSE	462	80	0	856	0	FALSE	ACH-000348
RPMI7951_SKIN	NRIP1--AF127936.7	4	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0.0436	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RPMI7951_SKIN	1	1	0.0872	FALSE	292	1546	117	613	0	FALSE	ACH-000348
RPMI7951_SKIN	RP11-96H19.1--RP11-446N19.1	5	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0545	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RPMI7951_SKIN	1	1	0.0545	FALSE	515	4851	409	746	0	FALSE	ACH-000348
RPMI7951_SKIN	MT-TA--MT-TC	4	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0.0218	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RPMI7951_SKIN	1	1	0.0654	FALSE	462	80	0	856	0	FALSE	ACH-000348
RPMI7951_SKIN	NRIP1--AF127936.7	3	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.5	1	0.0327	0.0654	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RPMI7951_SKIN	0.5	1	0.0981	FALSE	164	806	69	479	0	FALSE	ACH-000348
RPMI7951_SKIN	MT-ND6--MT-TE	3	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.0218	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RPMI7951_SKIN	1	1	0.0545	FALSE	499	1288	110	792	0	FALSE	ACH-000348
RPMI7951_SKIN	RP11-476K15.1--CTD-2015H3.2	3	2	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	5	0	0.5	1	0.0327	0.0218	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	RPMI7951_SKIN	0.5	1	0.0545	FALSE	0	46	0	73	0	FALSE	ACH-000348
RPMI7951_SKIN	PRR16--CTD-2334D19.1	3	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	12	0	0.25	1	0.0327	0.0109	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	RPMI7951_SKIN	0.25	1	0.0436	FALSE	56	216	12	147	0	FALSE	ACH-000348
RPMI7951_SKIN	FTH1--ACTG1	3	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	RPMI7951_SKIN	1	1	0.0327	TRUE	0	0	0	64	0	FALSE	ACH-000348
RPMI7951_SKIN	RNF152--RP11-879F14.1	3	0	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	RPMI7951_SKIN	1	1	0.0327	FALSE	275	472	65	43	0	FALSE	ACH-000348
RPMI7951_SKIN	ADAM17--YWHAQ	2	3	ADAM17	1284	chr2:9695638:-	YWHAQ	26092	chr2:9770663:-	ONLY_REF_SPLICE	YES	87	38	0.05	0.12	0.0218	0.0327	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[28180],ADAM17->ADAM_metallopeptidase_domain_17,chr2:9628615-9695921:-,YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta	RPMI7951_SKIN	0.05	0.12	0.0545	TRUE	0	0	0	1	0	FALSE	ACH-000348
RPMI7951_SKIN	RP11-476K15.1--CTD-2015H3.2	2	2	RP11-476K15.1	3243	chr18:1626368:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	8	0	0.33	1	0.0218	0.0218	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	RPMI7951_SKIN	0.33	1	0.0436	FALSE	0	1	0	4	0	FALSE	ACH-000348
RPMI7951_SKIN	AC104389.28--HBE1	2	0	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	RPMI7951_SKIN	1	1	0.0218	TRUE	0	35	0	55	35	FALSE	ACH-000348
RPMI7951_SKIN	CDH13--RP11-22H5.2	2	0	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	RPMI7951_SKIN	1	1	0.0218	FALSE	14	31	0	36	0	FALSE	ACH-000348
RPMI7951_SKIN	LINC01036--LINC01037	2	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	RPMI7951_SKIN	1	1	0.0218	FALSE	0	24	0	62	0	FALSE	ACH-000348
RPMI7951_SKIN	NRIP1--AF127936.7	1	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	7	0	0.42	1	0.0109	0.0436	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RPMI7951_SKIN	0.42	1	0.0545	FALSE	125	705	46	456	0	FALSE	ACH-000348
RPMI7951_SKIN	PARD3--RP11-762I7.5	2	0	PARD3	3733	chr10:34805907:-	RP11-762I7.5	51859	chr12:56154424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,RP11-762I7.5->chr12:56151059-56221330:-	RPMI7951_SKIN	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000348
RPMI7951_SKIN	TIMM23--RP11-464F9.1	2	0	TIMM23	4468	chr10:51613218:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RPMI7951_SKIN	1	1	0.0218	TRUE	4	2	0	9	0	FALSE	ACH-000348
RPMI7951_SKIN	COL8A1--CMSS1	1	3	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	24	243	0.14	0.02	0.0109	0.0327	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	RPMI7951_SKIN	0.02	0.14	0.0436	FALSE	38	10	2	29	0	FALSE	ACH-000348
RPMI7951_SKIN	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	16	0.5	0.16	0.0109	0.0218	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RPMI7951_SKIN	0.16	0.5	0.0327	FALSE	16	356	14	466	0	FALSE	ACH-000348
RPMI7951_SKIN	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	3	6	0.5	0.33	0.0109	0.0218	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RPMI7951_SKIN	0.33	0.5	0.0327	FALSE	0	23	1	67	0	FALSE	ACH-000348
RPMI7951_SKIN	RP11-476K15.1--CTD-2015H3.2	1	2	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	5	0	0.38	1	0.0109	0.0218	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	RPMI7951_SKIN	0.38	1	0.0327	FALSE	0	46	0	73	0	FALSE	ACH-000348
RPMI7951_SKIN	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0109	0.0218	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RPMI7951_SKIN	1	1	0.0327	FALSE	192	492	57	212	0	FALSE	ACH-000348
RPMI7951_SKIN	DNER--ANXA2	1	1	DNER	6135	chr2:230450574:-	ANXA2	38364	chr15:60656722:-	ONLY_REF_SPLICE	YES	190	3700	0.01	0	0.0109	0.0109	DNER->chr2:230222345-230579274:-,delta/notch_like_EGF_repeat_containing,ANXA2->annexin_A2,chr15:60639333-60695082:-	RPMI7951_SKIN	0	0.01	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000348
RPMI7951_SKIN	NRAS--CSDE1	1	1	NRAS	1845	chr1:115258671:-	CSDE1	34139	chr1:115261366:-	ONLY_REF_SPLICE	NO	140	500	0.01	0	0.0109	0.0109	LOCAL_REARRANGEMENT:-:[19],NRAS->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr1:115247090-115259515:-,neuroblastoma_RAS_viral_oncogene_homolog,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	RPMI7951_SKIN	0	0.01	0.0218	FALSE	0	0	0	2	0	FALSE	ACH-000348
RPMI7951_SKIN	POLR2J3--GNB1	1	1	POLR2J3	5847	chr7:102207444:-	GNB1	22901	chr1:1756938:-	ONLY_REF_SPLICE	YES	133	63	0.01	0.03	0.0109	0.0109	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	RPMI7951_SKIN	0.01	0.03	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000348
RPMI7951_SKIN	RP11-163F15.1--RP11-215N21.1	1	1	RP11-163F15.1	1139	chr10:110321435:-	RP11-215N21.1	6576	chr10:109871360:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0109	0.0109	RP11-163F15.1->chr10:110307733-110321573:-,RP11-215N21.1->chr10:109517591-109871360:-	RPMI7951_SKIN	0.4	1	0.0218	TRUE	0	5	0	7	5	TRUE	ACH-000348
RPMI7951_SKIN	RP11-400N13.3--RP11-191N8.2	1	1	RP11-400N13.3	2344	chr1:222231756:-	RP11-191N8.2	6776	chr1:222013795:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0109	0.0109	RP11-400N13.3->chr1:222215047-222238105:-,RP11-191N8.2->chr1:222001008-222014008:-	RPMI7951_SKIN	1	1	0.0218	TRUE	0	16	0	2	11	TRUE	ACH-000348
RPMI7951_SKIN	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0109	0.0109	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RPMI7951_SKIN	0.67	1	0.0218	FALSE	407	2205	196	549	0	FALSE	ACH-000348
RPMI7951_SKIN	WDR41--CWC27	1	1	WDR41	7042	chr5:76785282:-	CWC27	44586	chr5:64181270:+	ONLY_REF_SPLICE	YES	120	76	0.02	0.03	0.0109	0.0109	WDR41->WD_repeat_domain_41,chr5:76721795-76916436:-,CWC27->CWC27_spliceosome_associated_protein_homolog,chr5:64064757-64314590:+	RPMI7951_SKIN	0.02	0.03	0.0218	TRUE	0	0	0	1	0	FALSE	ACH-000348
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLX1NB--TRDC	171	147	TLX1NB	1341	chr10:102890543:-	TRDC	7892	chr14:22931924:+	ONLY_REF_SPLICE	YES	5	0	0.98	1	2.0762	1.7848	Mitelman{ALL=2},TLX1NB->TLX1_neighbor,chr10:102849078-102890883:-,TRDC->T_cell_receptor_delta_constant,chr14:22931924-22934779:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	3.861	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AE000661.37--TLX1	167	118	AE000661.37	4572	chr14:22931924:-	TLX1	17229	chr10:102890543:+	INCL_NON_REF_SPLICE	YES	4	46	0.99	0.86	2.0276	1.4327	AE000661.37->chr14:22849083-22951948:-,TLX1->Oncogene{Bushman},T-cell_leukemia_homeobox_1,chr10:102889257-102897545:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	0.99	3.4603	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLX1NB--TRDC	141	162	TLX1NB	1370	chr10:102890514:-	TRDC	7892	chr14:22931924:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.712	1.9669	Mitelman{ALL=2},TLX1NB->TLX1_neighbor,chr10:102849078-102890883:-,TRDC->T_cell_receptor_delta_constant,chr14:22931924-22934779:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	3.6789	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP214--ABL1	140	90	NUP214	38728	chr9:134098317:+	ABL1	51696	chr9:133729451:+	ONLY_REF_SPLICE	YES	92	62	0.71	0.79	1.6998	1.0927	chimerdb_omim:{T-cellacutelymphoblasticleukemia},chimerdb_pubmed{Tcell acute lymphoblastic leukemia (TALL),Tcell acute lymphoblastic leukemia,TALL,Tcell leukemia},NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.79	2.7925	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AE000661.37--TLX1	128	124	AE000661.37	4572	chr14:22931924:-	TLX1	17200	chr10:102890514:+	INCL_NON_REF_SPLICE	YES	4	44	0.98	0.85	1.5541	1.5056	AE000661.37->chr14:22849083-22951948:-,TLX1->Oncogene{Bushman},T-cell_leukemia_homeobox_1,chr10:102889257-102897545:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.98	3.0597	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	138	37	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.6755	0.4492	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	2.1247	TRUE	508	994	45	981	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	105	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2749	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2749	TRUE	0	0	0	518	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	82	35	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	62	53	0.65	0.69	0.9956	0.425	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.69	1.4206	TRUE	181	1564	124	196	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A32--RP11-318M2.2	62	29	SLC25A32	1406	chr8:104427012:-	RP11-318M2.2	25340	chr8:104178524:-	ONLY_REF_SPLICE	YES	51	1	0.64	0.99	0.7528	0.3521	NEIGHBORS[99863],SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,RP11-318M2.2->chr8:104169218-104311000:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.99	1.1049	FALSE	4	4	0	4	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	68	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	214	6	0.25	0.92	0.8256	0.0243	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.92	0.8499	TRUE	519	3926	326	965	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	47	7	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	2206	3	0.02	0.95	0.5707	0.085	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.95	0.6557	FALSE	43	37	8	105	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AE000661.37--TLX1	7	124	AE000661.37	4572	chr14:22931924:-	TLX1	16851	chr10:102890165:+	INCL_NON_REF_SPLICE	YES	4	19	0.97	0.87	0.085	1.5056	AE000661.37->chr14:22849083-22951948:-,TLX1->Oncogene{Bushman},T-cell_leukemia_homeobox_1,chr10:102889257-102897545:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	0.97	1.5906	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A32--RP11-318M2.2	28	33	SLC25A32	1406	chr8:104427012:-	RP11-318M2.2	20486	chr8:104246600:-	ONLY_REF_SPLICE	YES	51	2	0.54	0.97	0.34	0.4007	NEIGHBORS[99863],SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,RP11-318M2.2->chr8:104169218-104311000:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.97	0.7407	FALSE	0	0	0	3	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBA1B--PTMA	35	0	TUBA1B	4414	chr12:49521767:-	PTMA	13136	chr2:232577153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.425	0	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.425	TRUE	0	0	0	4	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	29	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3521	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3521	TRUE	0	0	0	434	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP214--ABL1	7	85	NUP214	38728	chr9:134098317:+	ABL1	51699	chr9:133729454:+	ONLY_REF_SPLICE	YES	92	61	0.5	0.6	0.085	1.032	chimerdb_omim:{T-cellacutelymphoblasticleukemia},chimerdb_pubmed{Tcell acute lymphoblastic leukemia (TALL),Tcell acute lymphoblastic leukemia,TALL,Tcell leukemia},NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.6	1.117	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLX1NB--TRDC	7	64	TLX1NB	1370	chr10:102890514:-	TRDC	8049	chr14:22932081:+	INCL_NON_REF_SPLICE	YES	0	568	1	0.11	0.085	0.7771	Mitelman{ALL=2},TLX1NB->TLX1_neighbor,chr10:102849078-102890883:-,TRDC->T_cell_receptor_delta_constant,chr14:22931924-22934779:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.8621	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A32--C8orf56	18	8	SLC25A32	1406	chr8:104427012:-	C8orf56	13556	chr8:104145597:-	ONLY_REF_SPLICE	YES	51	0	0.34	1	0.2185	0.0971	SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,C8orf56->chr8:104145191-104153703:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	1	0.3156	TRUE	0	1	0	1	1	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	15	17	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5	0	0.86	1	0.1821	0.2064	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.3885	FALSE	43	37	8	105	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLX1NB--TRDC	4	54	TLX1NB	1341	chr10:102890543:-	TRDC	8049	chr14:22932081:+	INCL_NON_REF_SPLICE	YES	5	568	0.92	0.09	0.0486	0.6556	Mitelman{ALL=2},TLX1NB->TLX1_neighbor,chr10:102849078-102890883:-,TRDC->T_cell_receptor_delta_constant,chr14:22931924-22934779:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.92	0.7042	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	15	4	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6364	43	0	0.31	0.1821	0.0486	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.31	0.2307	FALSE	43	37	8	105	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	14	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.17	0.0121	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1821	FALSE	462	80	0	856	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBA1B--PTMA	14	0	TUBA1B	4124	chr12:49522057:-	PTMA	9248	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.17	0	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.17	TRUE	0	0	0	3	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-80H8.4--SLC9A9-AS2	12	4	RP11-80H8.4	1215	chr3:142842418:+	SLC9A9-AS2	6442	chr3:143100786:+	ONLY_REF_SPLICE	YES	8	0	0.67	1	0.1457	0.0486	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-80H8.4->chr3:142842204-142850735:+,SLC9A9-AS2->SLC9A9_antisense_RNA_2,chr3:143100180-143101003:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.1943	TRUE	3	14	0	3	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	8	19	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0971	0.2307	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3278	FALSE	43	37	8	105	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A32--RP11-318M2.2	3	34	SLC25A32	1405	chr8:104427013:-	RP11-318M2.2	13760	chr8:104298133:-	INCL_NON_REF_SPLICE	YES	51	3	0.42	0.93	0.0364	0.4128	NEIGHBORS[99863],SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,RP11-318M2.2->chr8:104169218-104311000:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.93	0.4492	FALSE	0	0	0	3	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	10	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3478	0	0	1	0.1214	0.0121	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1335	FALSE	13	9	0	364	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	21	MT-ND5	2818	chrM:14154:+	MT-ATP8	5853	chrM:8406:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0.255	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3157	FALSE	43	37	8	105	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1093	0.0243	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1336	FALSE	499	1288	110	792	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A32--RP11-318M2.2	1	33	SLC25A32	1406	chr8:104427012:-	RP11-318M2.2	18579	chr8:104258912:-	ONLY_REF_SPLICE	NO	51	3	0.4	0.92	0.0121	0.4007	NEIGHBORS[99863],SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,RP11-318M2.2->chr8:104169218-104311000:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.92	0.4128	FALSE	1	0	0	3	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.085	0.0728	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1578	FALSE	499	1288	110	792	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0971	0.0243	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1214	FALSE	499	1288	110	792	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AE000661.37--TLX1	5	11	AE000661.37	4415	chr14:22932081:-	TLX1	17200	chr10:102890514:+	INCL_NON_REF_SPLICE	YES	132	44	0.11	0.27	0.0607	0.1336	AE000661.37->chr14:22849083-22951948:-,TLX1->Oncogene{Bushman},T-cell_leukemia_homeobox_1,chr10:102889257-102897545:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.27	0.1943	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	11	MT-ND5	2583	chrM:13919:+	MT-ATP8	5869	chrM:8422:+	INCL_NON_REF_SPLICE	YES	2168	0	0.01	1	0.0607	0.1336	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1943	FALSE	43	37	8	105	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	19	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0364	0.2307	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.2671	FALSE	43	37	8	105	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	11	MT-ND5	2712	chrM:14048:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	YES	13	2	0.55	0.89	0.0607	0.1336	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.89	0.1943	FALSE	43	37	8	105	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP214--ABL1	1	27	NUP214	37295	chr9:134090755:+	ABL1	51696	chr9:133729451:+	ONLY_REF_SPLICE	NO	86	62	0.25	0.31	0.0121	0.3278	chimerdb_omim:{T-cellacutelymphoblasticleukemia},chimerdb_pubmed{Tcell acute lymphoblastic leukemia (TALL),Tcell acute lymphoblastic leukemia,TALL,Tcell leukemia},NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.31	0.3399	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	7	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.085	0.0243	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.1093	FALSE	292	1546	117	613	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLX1NB--TRDC	1	26	TLX1NB	1341	chr10:102890543:-	TRDC	8734	chr14:22932766:+	ONLY_REF_SPLICE	YES	5	1359	0.84	0.02	0.0121	0.3157	Mitelman{ALL=2},TLX1NB->TLX1_neighbor,chr10:102849078-102890883:-,TRDC->T_cell_receptor_delta_constant,chr14:22931924-22934779:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.84	0.3278	TRUE	0	0	0	1	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	7	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.085	0.0121	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0971	TRUE	477	1352	189	275	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.085	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.085	FALSE	13	9	0	364	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-80H8.4--SLC9A9-AS2	7	0	RP11-80H8.4	1027	chr3:142842230:+	SLC9A9-AS2	6442	chr3:143100786:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.085	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-80H8.4->chr3:142842204-142850735:+,SLC9A9-AS2->SLC9A9_antisense_RNA_2,chr3:143100180-143101003:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.085	TRUE	3	14	0	3	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AE000661.37--TLX1	4	11	AE000661.37	4415	chr14:22932081:-	TLX1	17229	chr10:102890543:+	INCL_NON_REF_SPLICE	YES	132	46	0.1	0.25	0.0486	0.1336	AE000661.37->chr14:22849083-22951948:-,TLX1->Oncogene{Bushman},T-cell_leukemia_homeobox_1,chr10:102889257-102897545:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.25	0.1822	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	6	0	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0728	0	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0728	FALSE	0	1	0	18	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	5	4	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	1794	1074	0	0.01	0.0607	0.0486	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1093	FALSE	43	37	8	105	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC25A32--RP11-318M2.2	6	0	SLC25A32	1406	chr8:104427012:-	RP11-318M2.2	27128	chr8:104169266:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0728	0	NEIGHBORS[99863],SLC25A32->chr8:104410863-104427417:-,solute_carrier_family_25_member_32,RP11-318M2.2->chr8:104169218-104311000:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0728	FALSE	0	0	0	1	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0.0243	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.085	FALSE	462	80	0	856	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	9	MT-ND5	2167	chrM:13503:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	4300	0	0	1	0.0364	0.1093	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1457	FALSE	43	37	8	105	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	9	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	2913	1	0	0.92	0.0364	0.1093	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.92	0.1457	FALSE	43	37	8	105	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-80H8.4--SLC9A9-AS2	4	4	RP11-80H8.4	1215	chr3:142842418:+	SLC9A9-AS2	6445	chr3:143100789:+	INCL_NON_REF_SPLICE	YES	8	0	0.5	1	0.0486	0.0486	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-80H8.4->chr3:142842204-142850735:+,SLC9A9-AS2->SLC9A9_antisense_RNA_2,chr3:143100180-143101003:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0972	TRUE	3	14	0	3	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBR5--AZIN1	5	0	UBR5	1669	chr8:103424401:-	AZIN1	63524	chr8:103870378:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0607	0	GTEx&tcga_normals:1/3694=0.03%,UBR5->chr8:103265240-103425069:-,ubiquitin_protein_ligase_E3_component_n-recognin_5,AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0607	TRUE	0	0	0	4	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0607	TRUE	0	0	0	518	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND5--MT-ATP8	3	7	MT-ND5	2288	chrM:13624:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	NO	1599	3	0.01	0.77	0.0364	0.085	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.77	0.1214	FALSE	43	37	8	105	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	4	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0486	TRUE	0	5	1	24	1	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	19	0	0.27	1	0.0364	0.0486	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.085	FALSE	164	806	69	479	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBA1B--PTMA	4	0	TUBA1B	4386	chr12:49521795:-	PTMA	12658	chr2:232576675:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0486	0	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0486	TRUE	0	0	0	4	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YIPF6--BAZ1B	4	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0486	TRUE	1	23	1	24	8	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	3	2	AC131097.3	2273	chr2:242824786:+	AC093642.5	15104	chr2:243061116:+	ONLY_REF_SPLICE	YES	15	13	0.25	0.28	0.0364	0.0243	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.28	0.0607	FALSE	0	3	0	4	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	2	6	AC131097.3	2273	chr2:242824786:+	AC093642.5	11670	chr2:243037038:+	ONLY_REF_SPLICE	YES	15	4	0.35	0.67	0.0243	0.0728	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.67	0.0971	FALSE	3	20	2	16	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	2	6	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	72	53	0.1	0.13	0.0243	0.0728	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.13	0.0971	TRUE	105	90	7	93	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0.0243	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0607	FALSE	515	4851	409	746	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	3	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0.0121	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0485	FALSE	0	24	0	62	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	2	4	AC131097.3	2273	chr2:242824786:+	AC093642.5	12811	chr2:243056790:+	ONLY_REF_SPLICE	YES	15	13	0.29	0.32	0.0243	0.0486	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.32	0.0729	FALSE	2	37	1	16	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATXN2L--PTMA	3	0	ATXN2L	13083	chr16:28847966:+	PTMA	18305	chr2:232573234:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	ATXN2L->ataxin_2_like,chr16:28834356-28848558:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0364	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf25--DAZAP1	3	0	C19orf25	1783	chr19:1478773:-	DAZAP1	15362	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0364	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=16;pct=0.18%;dist=Skin_-_Sun_Exposed_(Lower_leg)=5,Lung=3,Stomach=1,Minor_Salivary_Gland=1,Uterus=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1,Whole_Blood=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[25423],C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0364	TRUE	6	7	1	24	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LENG8--MT-ATP6	3	0	LENG8	6197	chr19:54965805:+	MT-ATP6	17010	chrM:8927:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0364	0	LENG8->chr19:54960065-54973217:+,leukocyte_receptor_cluster_(LRC)_member_8,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0364	FALSE	0	0	0	2	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	2	2	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	6	431	0.4	0.01	0.0243	0.0243	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.4	0.0486	FALSE	0	0	0	19	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	2	2	NOC4L	5448	chr12:132633440:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	NO	64	30	0.06	0.12	0.0243	0.0243	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.12	0.0486	TRUE	4	9	0	12	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0243	0.0243	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0486	FALSE	16	356	14	466	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CRYBB2P1--MYO18B	2	1	CRYBB2P1	4552	chr22:25855482:+	MYO18B	43700	chr22:26272156:+	ONLY_REF_SPLICE	YES	59	534	0.05	0.01	0.0243	0.0121	CRYBB2P1->chr22:25844072-25916821:+,crystallin_beta_B2_pseudogene_1,MYO18B->chr22:26138111-26427007:+,myosin_XVIIIB	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.0364	FALSE	0	0	0	1	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC009403.2--SRSF11	2	0	AC009403.2	2738	chr7:155436162:-	SRSF11	24457	chr1:70715635:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	AC009403.2->chr7:155403925-155437899:-,SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EMC2--RASA3	2	0	EMC2	1098	chr8:109455927:+	RASA3	22427	chr13:114817630:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	2	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	FALSE	0	26	0	50	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.28	1	0.0121	0.0486	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	1	0.0607	FALSE	125	705	46	456	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUP214--ABL1	1	4	NUP214	35067	chr9:134074402:+	ABL1	51696	chr9:133729451:+	ONLY_REF_SPLICE	NO	183	62	0.03	0.07	0.0121	0.0486	chimerdb_omim:{T-cellacutelymphoblasticleukemia},chimerdb_pubmed{Tcell acute lymphoblastic leukemia (TALL),Tcell acute lymphoblastic leukemia,TALL,Tcell leukemia},NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.07	0.0607	TRUE	0	0	0	1	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB27A--CCPG1	2	0	RAB27A	4005	chr15:55581914:-	CCPG1	27753	chr15:55670574:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	LOCAL_REARRANGEMENT:-:[20919],RAB27A->RAB27A,_member_RAS_oncogene_family,chr15:55495164-55611311:-,CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RHOH--SFPQ	2	0	RHOH	1286	chr4:40192958:+	SFPQ	34399	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	RHOH->Oncogene{Bushman},chr4:40192673-40248587:+,ras_homolog_family_member_H,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM33--TDRD3	2	0	TRIM33	3895	chr1:115005726:-	TDRD3	48151	chr13:61141659:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0243	0	TRIM33->Oncogene{Bushman},chr1:114935399-115053781:-,tripartite_motif_containing_33,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0243	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	1	2	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	YES	99	56	0.03	0.05	0.0121	0.0243	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.05	0.0364	TRUE	4	3	0	21	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001432.14--TTC3	1	1	AP001432.14	1179	chr21:38593898:+	TTC3	54382	chr21:38555076:+	ONLY_REF_SPLICE	YES	4	161	0.33	0.01	0.0121	0.0121	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.33	0.0242	FALSE	0	0	0	2	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf62--NARF	1	1	C17orf62	1130	chr17:80408576:-	NARF	25725	chr17:80443373:+	ONLY_REF_SPLICE	YES	0	346	1	0.01	0.0121	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[7351],C17orf62->chr17:80400465-80408705:-,chromosome_17_open_reading_frame_62,NARF->chr17:80416056-80448413:+,nuclear_prelamin_A_recognition_factor	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0242	FALSE	0	1	0	1	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMTM8--CMTM7	1	1	CMTM8	3732	chr3:32409480:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	51	10	0.04	0.17	0.0121	0.0121	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.17	0.0242	FALSE	3	14	0	5	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	44	10	0.04	0.17	0.0121	0.0121	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.17	0.0242	FALSE	118	557	29	88	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--GPS1	1	1	EEF2	7141	chr19:3979327:-	GPS1	17466	chr17:80012774:+	ONLY_REF_SPLICE	NO	3398	428	0	0	0.0121	0.0121	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,GPS1->G_protein_pathway_suppressor_1,chr17:80008567-80015346:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NLRP14--SYT9	1	1	NLRP14	13762	chr11:7091687:+	SYT9	20136	chr11:7324270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0121	0.0121	NLRP14->NLR_family,_pyrin_domain_containing_14,chr11:7041677-7092539:+,SYT9->chr11:7260009-7490273:+,synaptotagmin_9	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	1	1	NOC4L	2218	chr12:132630210:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	89	30	0.02	0.06	0.0121	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.06	0.0242	TRUE	0	1	0	10	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAD51-AS1--RAD51	1	1	RAD51-AS1	1522	chr15:40986784:-	RAD51	13646	chr15:41001223:+	ONLY_REF_SPLICE	YES	14	270	0.12	0.01	0.0121	0.0121	NEIGHBORS_OVERLAP:-:+:[333],RAD51-AS1->RAD51_antisense_RNA_1_(head_to_head),chr15:40978922-40987305:-,RAD51->ArcherDX_panel,FoundationOne_panel,RAD51_recombinase,chr15:40986972-41024354:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.12	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RALY--EIF2S2	1	1	RALY	3636	chr20:32619410:+	EIF2S2	18823	chr20:32693351:-	ONLY_REF_SPLICE	YES	831	468	0	0	0.0121	0.0121	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},NEIGHBORS_OVERLAP:+:-:[20010],RALY->RALY_heterogeneous_nuclear_ribonucleoprotein,chr20:32581452-32696114:+,EIF2S2->chr20:32676104-32700138:-,eukaryotic_translation_initiation_factor_2_subunit_beta	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0242	FALSE	0	1	0	5	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--POLR3D	1	1	RCC1	2920	chr1:28835417:+	POLR3D	23245	chr8:22107588:+	ONLY_REF_SPLICE	YES	84	164	0.02	0.01	0.0121	0.0121	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,POLR3D->chr8:22102617-22112113:+,polymerase_(RNA)_III_subunit_D	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SF1--FUS	1	1	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	393	951	0.01	0	0.0121	0.0121	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0242	FALSE	5	20	0	32	0	FALSE	ACH-000105
ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM37--SKA2	1	1	TRIM37	2583	chr17:57181654:-	SKA2	40039	chr17:57196856:-	ONLY_REF_SPLICE	YES	105	455	0.02	0	0.0121	0.0121	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_REARRANGEMENT:-:[3030],TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,SKA2->chr17:57187312-57232630:-,spindle_and_kinetochore_associated_complex_subunit_2	ALLSIL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000105
MDAMB231_BREAST	TIMM23B--LINC00843	60	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.883	0.1619	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MDAMB231_BREAST	0.99	1	1.0449	TRUE	508	994	45	981	0	FALSE	ACH-000768
MDAMB231_BREAST	ZNF654--HMGB2	45	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6622	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MDAMB231_BREAST	1	1	0.6622	TRUE	0	0	0	518	0	FALSE	ACH-000768
MDAMB231_BREAST	MT-TA--MT-TC	39	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5739	0.0736	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB231_BREAST	1	1	0.6475	FALSE	462	80	0	856	0	FALSE	ACH-000768
MDAMB231_BREAST	TIMM23--RP11-464F9.1	33	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	230	0	0.13	1	0.4856	0.0147	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MDAMB231_BREAST	0.13	1	0.5003	TRUE	519	3926	326	965	0	FALSE	ACH-000768
MDAMB231_BREAST	KHDRBS1--HLA-C	29	0	KHDRBS1	4802	chr1:32498799:+	HLA-C	19309	chr6:31237305:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4268	0	KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+,HLA-C->chr6:31236526-31239907:-,major_histocompatibility_complex,_class_I,_C	MDAMB231_BREAST	1	1	0.4268	FALSE	0	0	0	6	0	FALSE	ACH-000768
MDAMB231_BREAST	MIPEPP3--ABHD12	25	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3679	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	MDAMB231_BREAST	1	1	0.3679	TRUE	64	202	9	44	0	FALSE	ACH-000768
MDAMB231_BREAST	MT-ND4--MT-ATP8	21	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.309	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB231_BREAST	1	1	0.309	FALSE	230	193	14	283	0	FALSE	ACH-000768
MDAMB231_BREAST	MT-ND6--MT-TE	19	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2796	0.0294	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB231_BREAST	1	1	0.309	FALSE	499	1288	110	792	0	FALSE	ACH-000768
MDAMB231_BREAST	MT-ND6--MT-TE	13	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.1913	0.1472	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB231_BREAST	0.85	1	0.3385	FALSE	499	1288	110	792	0	FALSE	ACH-000768
MDAMB231_BREAST	PLXDC1--TAF13	15	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2207	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	MDAMB231_BREAST	1	1	0.2207	TRUE	7	10	0	216	0	FALSE	ACH-000768
MDAMB231_BREAST	MT-ND4--MT-ATP8	14	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.206	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB231_BREAST	1	1	0.206	FALSE	230	193	14	283	0	FALSE	ACH-000768
MDAMB231_BREAST	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1913	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MDAMB231_BREAST	1	1	0.1913	TRUE	0	0	0	434	0	FALSE	ACH-000768
MDAMB231_BREAST	MT-ND6--MT-TE	10	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1472	0.0294	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB231_BREAST	1	1	0.1766	FALSE	499	1288	110	792	0	FALSE	ACH-000768
MDAMB231_BREAST	MT-ND6--MT-TE	4	19	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0589	0.2796	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB231_BREAST	1	1	0.3385	FALSE	499	1288	110	792	0	FALSE	ACH-000768
MDAMB231_BREAST	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1177	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB231_BREAST	1	1	0.1177	FALSE	230	198	14	283	0	FALSE	ACH-000768
MDAMB231_BREAST	MT-ND6--MT-TE	4	16	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.83	1	0.0589	0.2355	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB231_BREAST	0.83	1	0.2944	FALSE	499	1288	110	792	0	FALSE	ACH-000768
MDAMB231_BREAST	MT-ND6--MT-TE	3	16	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	6	0	0.76	1	0.0441	0.2355	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB231_BREAST	0.76	1	0.2796	FALSE	499	1288	110	792	0	FALSE	ACH-000768
MDAMB231_BREAST	MT-ND6--MT-TE	3	16	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	5	0	0.79	1	0.0441	0.2355	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB231_BREAST	0.79	1	0.2796	FALSE	499	1288	110	792	0	FALSE	ACH-000768
MDAMB231_BREAST	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.103	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB231_BREAST	1	1	0.103	FALSE	462	80	0	856	0	FALSE	ACH-000768
MDAMB231_BREAST	MT-ND6--MT-TE	4	11	MT-ND6	1199	chrM:14475:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	5	0	0.75	1	0.0589	0.1619	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB231_BREAST	0.75	1	0.2208	FALSE	499	1288	110	792	0	FALSE	ACH-000768
MDAMB231_BREAST	IGFBP4--NPM1	6	1	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	2015	3	0	0.7	0.0883	0.0147	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	MDAMB231_BREAST	0	0.7	0.103	TRUE	0	0	0	38	0	FALSE	ACH-000768
MDAMB231_BREAST	KCNQ5-IT1--KCNQ5	6	1	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	2	16	0.78	0.3	0.0883	0.0147	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	MDAMB231_BREAST	0.3	0.78	0.103	FALSE	1	11	0	34	0	FALSE	ACH-000768
MDAMB231_BREAST	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0883	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MDAMB231_BREAST	1	1	0.0883	FALSE	13	9	0	364	0	FALSE	ACH-000768
MDAMB231_BREAST	MT-TA--MT-TC	4	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0589	0.0883	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB231_BREAST	1	1	0.1472	FALSE	462	80	0	856	0	FALSE	ACH-000768
MDAMB231_BREAST	MT-TA--MT-TC	4	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0589	0.0883	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB231_BREAST	1	1	0.1472	FALSE	462	80	0	856	0	FALSE	ACH-000768
MDAMB231_BREAST	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0736	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MDAMB231_BREAST	1	1	0.0736	FALSE	13	9	0	364	0	FALSE	ACH-000768
MDAMB231_BREAST	IGFBP4--NPM1	4	1	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	2050	3	0	0.62	0.0589	0.0147	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	MDAMB231_BREAST	0	0.62	0.0736	FALSE	0	0	0	38	0	FALSE	ACH-000768
MDAMB231_BREAST	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0589	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MDAMB231_BREAST	1	1	0.0589	TRUE	0	0	0	434	0	FALSE	ACH-000768
MDAMB231_BREAST	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0589	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MDAMB231_BREAST	1	1	0.0589	TRUE	0	0	0	434	0	FALSE	ACH-000768
MDAMB231_BREAST	MT-ND4--MT-ATP8	3	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	12285	2	0	0.67	0.0441	0.0147	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB231_BREAST	0	0.67	0.0588	FALSE	231	217	16	283	0	FALSE	ACH-000768
MDAMB231_BREAST	CALM3--MT-ND4L	3	0	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MDAMB231_BREAST	1	1	0.0441	FALSE	1	1	0	107	0	FALSE	ACH-000768
MDAMB231_BREAST	EMC2--EIF3E	3	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0441	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	MDAMB231_BREAST	1	1	0.0441	TRUE	0	0	0	12	0	TRUE	ACH-000768
MDAMB231_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1029	chrM:10788:+	MT-ATP8	5415	chrM:8402:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB231_BREAST	1	1	0.0441	FALSE	230	190	14	283	0	FALSE	ACH-000768
MDAMB231_BREAST	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	MDAMB231_BREAST	1	1	0.0441	TRUE	22	156	2	142	0	FALSE	ACH-000768
MDAMB231_BREAST	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0.0294	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB231_BREAST	1	1	0.0588	FALSE	515	4851	409	746	0	FALSE	ACH-000768
MDAMB231_BREAST	PROSC--CHMP1A	2	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	37	158	0.07	0.02	0.0294	0.0147	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	MDAMB231_BREAST	0.02	0.07	0.0441	TRUE	13	55	3	29	0	FALSE	ACH-000768
MDAMB231_BREAST	B2M--GNAS	2	0	B2M	1137	chr15:45003811:+	GNAS	25752	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Whole_Blood=[count:8=pct:6.1],Blood=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6],Lung=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=18;pct=0.21%;dist=Whole_Blood=9,Lung=3,Pancreas=1,Minor_Salivary_Gland=1,Thyroid=1,Cells_-_EBV-transformed_lymphocytes=1,Muscle_-_Skeletal=1,Colon_-_Transverse=1},B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	MDAMB231_BREAST	1	1	0.0294	TRUE	14	13	1	7	0	FALSE	ACH-000768
MDAMB231_BREAST	NECAP1--TPT1-AS1	2	0	NECAP1	2859	chr12:8242632:+	TPT1-AS1	21718	chr13:45951196:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	NECAP1->NECAP_endocytosis_associated_1,chr12:8234807-8250367:+,TPT1-AS1->TPT1_antisense_RNA_1,chr13:45915480-45965872:+	MDAMB231_BREAST	1	1	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000768
MDAMB231_BREAST	ZNF324B--RPS5	2	0	ZNF324B	3741	chr19:58965711:+	RPS5	13426	chr19:58904343:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	LOCAL_REARRANGEMENT:+:[56798],ZNF324B->chr19:58962971-58969200:+,zinc_finger_protein_324B,RPS5->chr19:58897767-58906173:+,ribosomal_protein_S5	MDAMB231_BREAST	1	1	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000768
MDAMB231_BREAST	RP11-114H23.1--RP11-114H23.2	1	2	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0.0294	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	MDAMB231_BREAST	1	1	0.0441	FALSE	5	9	0	20	0	FALSE	ACH-000768
MDAMB231_BREAST	RP11-114H23.1--RP11-114H23.2	1	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0.0294	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	MDAMB231_BREAST	1	1	0.0441	FALSE	81	155	12	160	0	FALSE	ACH-000768
MDAMB231_BREAST	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0147	0.0294	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB231_BREAST	1	1	0.0441	FALSE	407	2205	196	549	0	FALSE	ACH-000768
MDAMB231_BREAST	BAZ1B--CALU	1	1	BAZ1B	4916	chr7:72912827:-	CALU	32531	chr7:128398925:+	ONLY_REF_SPLICE	NO	158	776	0.01	0	0.0147	0.0147	BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-,CALU->calumenin,chr7:128379346-128411861:+	MDAMB231_BREAST	0	0.01	0.0294	FALSE	0	0	0	1	0	FALSE	ACH-000768
MDAMB231_BREAST	DIP2C--WDR37	1	1	DIP2C	1250	chr10:735434:-	WDR37	53145	chr10:1118056:+	ONLY_REF_SPLICE	YES	12	13	0.14	0.13	0.0147	0.0147	DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	MDAMB231_BREAST	0.13	0.14	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000768
MDAMB231_BREAST	LDLRAD3--QSER1	1	1	LDLRAD3	4538	chr11:36103328:+	QSER1	19918	chr11:32948703:+	ONLY_REF_SPLICE	NO	34	4	0.06	0.33	0.0147	0.0147	LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,QSER1->chr11:32914724-33014862:+,glutamine_and_serine_rich_1	MDAMB231_BREAST	0.06	0.33	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000768
MDAMB231_BREAST	NT5C2--PCGF6	1	1	NT5C2	3325	chr10:104934615:-	PCGF6	36360	chr10:105074029:-	ONLY_REF_SPLICE	YES	175	60	0.01	0.03	0.0147	0.0147	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},NT5C2->5'-nucleotidase,_cytosolic_II,chr10:104845940-104953056:-,PCGF6->chr10:105062553-105110891:-,polycomb_group_ring_finger_6	MDAMB231_BREAST	0.01	0.03	0.0294	FALSE	0	0	0	1	0	FALSE	ACH-000768
PSN1_PANCREAS	SLC4A7--SUMF1	208	108	SLC4A7	21279	chr3:27442255:-	SUMF1	44932	chr3:4452662:-	ONLY_REF_SPLICE	YES	264	54	0.54	0.85	2.4068	1.2497	SLC4A7->chr3:27414214-27525911:-,solute_carrier_family_4_member_7,SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1	PSN1_PANCREAS	0.54	0.85	3.6565	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	GBF1--PRDX3	169	156	GBF1	3423	chr10:104019873:+	PRDX3	33888	chr10:120934104:-	ONLY_REF_SPLICE	YES	94	1160	0.78	0.22	1.9555	1.8051	GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1,PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3	PSN1_PANCREAS	0.22	0.78	3.7606	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	PRDX3--LRRC27	73	77	PRDX3	2212	chr10:120936533:-	LRRC27	18330	chr10:134155717:+	ONLY_REF_SPLICE	YES	1202	28	0.11	0.84	0.8447	0.891	PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3,LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27	PSN1_PANCREAS	0.11	0.84	1.7357	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	TIMM23B--LINC00843	82	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9488	0.3356	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PSN1_PANCREAS	1	1	1.2844	TRUE	508	994	45	981	0	FALSE	ACH-000320
PSN1_PANCREAS	TIMM23--RP11-464F9.1	52	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	280	5	0.18	0.92	0.6017	0.0926	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PSN1_PANCREAS	0.18	0.92	0.6943	TRUE	519	3926	326	965	0	FALSE	ACH-000320
PSN1_PANCREAS	TBCA--RP11-353N14.1	44	39	TBCA	2304	chr5:77072029:-	RP11-353N14.1	13980	chr17:77775750:+	ONLY_REF_SPLICE	YES	439	0	0.16	1	0.5091	0.4513	TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A,RP11-353N14.1->chr17:77774397-77776326:+	PSN1_PANCREAS	0.16	1	0.9604	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	MUC5AC--EEF1G	49	1	MUC5AC	11131	chr11:1213438:+	EEF1G	26347	chr11:62339112:-	INCL_NON_REF_SPLICE	YES	3150	6407	0.02	0.01	0.567	0.0116	MUC5AC->Oncogene{Bushman},chr11:1151580-1222364:+,mucin_5AC,_oligomeric_mucus/gel-forming,EEF1G->chr11:62327073-62342401:-,eukaryotic_translation_elongation_factor_1_gamma	PSN1_PANCREAS	0.01	0.02	0.5786	TRUE	0	0	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	MT-TA--MT-TC	47	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5438	0.0694	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PSN1_PANCREAS	1	1	0.6132	FALSE	462	80	0	856	0	FALSE	ACH-000320
PSN1_PANCREAS	CASC11--RNU4-25P	30	11	CASC11	10250	chr8:128700016:-	RNU4-25P	14846	chr8:129022690:-	INCL_NON_REF_SPLICE	YES	57	6	0.42	0.87	0.3471	0.1273	CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-,RNU4-25P->RNA,_U4_small_nuclear_25,_pseudogene,chr8:129022628-129022857:-	PSN1_PANCREAS	0.42	0.87	0.4744	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	ANP32E--NCL	29	0	ANP32E	7086	chr1:150199005:-	NCL	20399	chr2:232325472:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3356	0	ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,NCL->chr2:232318242-232348352:-,nucleolin	PSN1_PANCREAS	1	1	0.3356	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	RP11-123O10.4--GRIP1	21	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.243	0.0926	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PSN1_PANCREAS	1	1	0.3356	FALSE	416	2512	207	587	0	FALSE	ACH-000320
PSN1_PANCREAS	PRDX3--LRRC27	6	55	PRDX3	2212	chr10:120936533:-	LRRC27	19389	chr10:134158002:+	ONLY_REF_SPLICE	YES	1202	26	0.05	0.7	0.0694	0.6364	PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3,LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27	PSN1_PANCREAS	0.05	0.7	0.7058	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	PRDX3--LRRC27	3	61	PRDX3	2212	chr10:120936533:-	LRRC27	18353	chr10:134155740:+	INCL_NON_REF_SPLICE	YES	1202	32	0.05	0.67	0.0347	0.7058	PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3,LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27	PSN1_PANCREAS	0.05	0.67	0.7405	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	CASC11--RNU4-25P	13	13	CASC11	11342	chr8:128698924:-	RNU4-25P	14846	chr8:129022690:-	INCL_NON_REF_SPLICE	YES	26	6	0.5	0.81	0.1504	0.1504	CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-,RNU4-25P->RNA,_U4_small_nuclear_25,_pseudogene,chr8:129022628-129022857:-	PSN1_PANCREAS	0.5	0.81	0.3008	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	C15orf57--CBX3	10	23	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	96	17	0.26	0.66	0.1157	0.2661	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PSN1_PANCREAS	0.26	0.66	0.3818	TRUE	267	562	48	632	0	FALSE	ACH-000320
PSN1_PANCREAS	HSP90AB1--MT-RNR2	14	4	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3738	0	0	1	0.162	0.0463	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PSN1_PANCREAS	0	1	0.2083	FALSE	13	9	0	364	0	FALSE	ACH-000320
PSN1_PANCREAS	PVT1--MYC	12	12	PVT1	13955	chr8:129001537:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	211	2698	0.1	0.01	0.1389	0.1389	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	PSN1_PANCREAS	0.01	0.1	0.2778	TRUE	0	0	0	3	0	FALSE	ACH-000320
PSN1_PANCREAS	C15orf57--CBX3	9	20	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	91	17	0.24	0.63	0.1041	0.2314	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PSN1_PANCREAS	0.24	0.63	0.3355	TRUE	267	562	48	632	0	FALSE	ACH-000320
PSN1_PANCREAS	ANP32E--NCL	13	0	ANP32E	7005	chr1:150199086:-	NCL	20390	chr2:232325481:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1504	0	ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,NCL->chr2:232318242-232348352:-,nucleolin	PSN1_PANCREAS	1	1	0.1504	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	PRDX3--LRRC27	11	1	PRDX3	1079	chr10:120938267:-	LRRC27	19389	chr10:134158002:+	ONLY_REF_SPLICE	YES	0	26	1	0.32	0.1273	0.0116	PRDX3->chr10:120927215-120938345:-,peroxiredoxin_3,LRRC27->chr10:134145614-134195010:+,leucine_rich_repeat_containing_27	PSN1_PANCREAS	0.32	1	0.1389	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	ANP32E--NCL	11	0	ANP32E	7086	chr1:150199005:-	NCL	19588	chr2:232326283:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1273	0	ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,NCL->chr2:232318242-232348352:-,nucleolin	PSN1_PANCREAS	1	1	0.1273	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	CASC4--RP11-403B2.7	8	8	CASC4	1628	chr15:44581554:+	RP11-403B2.7	26532	chr15:20936423:-	ONLY_REF_SPLICE	YES	183	0	0.08	1	0.0926	0.0926	CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+,RP11-403B2.7->chr15:20935076-20961512:-	PSN1_PANCREAS	0.08	1	0.1852	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	RPSAP52--HMGA2	9	3	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	23	178	0.34	0.06	0.1041	0.0347	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	PSN1_PANCREAS	0.06	0.34	0.1388	FALSE	0	59	0	125	0	FALSE	ACH-000320
PSN1_PANCREAS	MT-TA--MT-TC	8	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0926	0.0694	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PSN1_PANCREAS	1	1	0.162	FALSE	462	80	0	856	0	FALSE	ACH-000320
PSN1_PANCREAS	PFN2--RP11-651P23.5	8	5	PFN2	5734	chr3:149686145:-	RP11-651P23.5	13015	chr3:149695899:+	ONLY_REF_SPLICE	YES	520	0	0.02	1	0.0926	0.0579	NEIGHBORS_OVERLAP:-:+:[2600],PFN2->chr3:149682691-149768575:-,profilin_2,RP11-651P23.5->chr3:149694542-149697142:+	PSN1_PANCREAS	0.02	1	0.1505	FALSE	0	0	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	RP11-680G10.1--GSE1	7	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	12	1	0.52	0.081	0.0694	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PSN1_PANCREAS	0.52	1	0.1504	TRUE	458	1351	185	561	0	FALSE	ACH-000320
PSN1_PANCREAS	HSP90AB1--MT-RNR2	7	4	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3760	0	0	1	0.081	0.0463	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PSN1_PANCREAS	0	1	0.1273	FALSE	13	9	0	364	0	FALSE	ACH-000320
PSN1_PANCREAS	PVT1--MYC	5	11	PVT1	13955	chr8:129001537:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	211	2632	0.07	0.01	0.0579	0.1273	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	PSN1_PANCREAS	0.01	0.07	0.1852	TRUE	0	0	0	3	0	FALSE	ACH-000320
PSN1_PANCREAS	ARHGEF2--UBQLN4	6	5	ARHGEF2	7863	chr1:155959025:-	UBQLN4	43465	chr1:156006921:-	ONLY_REF_SPLICE	YES	40	222	0.22	0.05	0.0694	0.0579	LOCAL_REARRANGEMENT:-:[28231],ARHGEF2->Oncogene{Bushman},Rho/Rac_guanine_nucleotide_exchange_factor_2,chr1:155916630-155976861:-,UBQLN4->chr1:156005092-156023585:-,ubiquilin_4	PSN1_PANCREAS	0.05	0.22	0.1273	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	MT-CO3--MT-ATP6	7	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.081	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PSN1_PANCREAS	1	1	0.081	FALSE	189	492	56	216	0	FALSE	ACH-000320
PSN1_PANCREAS	MUC5AC--MT-ND4L	4	11	MUC5AC	11253	chr11:1213560:+	MT-ND4L	23059	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2876	0	0.01	1	0.0463	0.1273	MUC5AC->Oncogene{Bushman},chr11:1151580-1222364:+,mucin_5AC,_oligomeric_mucus/gel-forming,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PSN1_PANCREAS	0.01	1	0.1736	FALSE	0	0	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	IGFBP4--NPM1	6	2	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	929	8	0.01	0.5	0.0694	0.0231	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	PSN1_PANCREAS	0.01	0.5	0.0925	FALSE	0	0	0	38	0	FALSE	ACH-000320
PSN1_PANCREAS	MT-TA--MT-TC	5	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0.0694	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PSN1_PANCREAS	1	1	0.1273	FALSE	462	80	0	856	0	FALSE	ACH-000320
PSN1_PANCREAS	PVT1--MYC	5	5	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	739	2698	0.01	0	0.0579	0.0579	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	PSN1_PANCREAS	0	0.01	0.1158	TRUE	3	14	0	24	0	FALSE	ACH-000320
PSN1_PANCREAS	NPM1P24--SET	6	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0694	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PSN1_PANCREAS	1	1	0.0694	TRUE	0	0	0	434	0	FALSE	ACH-000320
PSN1_PANCREAS	MT-CO3--MT-ATP6	5	3	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0.0347	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PSN1_PANCREAS	1	1	0.0926	FALSE	189	492	56	216	0	FALSE	ACH-000320
PSN1_PANCREAS	PVT1--CASC8	4	7	PVT1	1202	chr8:128806980:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	739	1	0.01	0.92	0.0463	0.081	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	PSN1_PANCREAS	0.01	0.92	0.1273	TRUE	0	2	0	5	2	TRUE	ACH-000320
PSN1_PANCREAS	MT-ND1--MT-RNR2	3	10	MT-ND1	1435	chrM:3741:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	139	0	0.09	1	0.0347	0.1157	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PSN1_PANCREAS	0.09	1	0.1504	FALSE	114	26	4	85	0	FALSE	ACH-000320
PSN1_PANCREAS	MT-CO3--MT-ATP6	3	9	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	12	0.92	0.5	0.0347	0.1041	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PSN1_PANCREAS	0.5	0.92	0.1388	FALSE	189	492	56	216	0	FALSE	ACH-000320
PSN1_PANCREAS	MT-ND6--MT-TE	5	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0.0116	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PSN1_PANCREAS	1	1	0.0695	FALSE	499	1288	110	792	0	FALSE	ACH-000320
PSN1_PANCREAS	MT-ND6--MT-TE	5	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0.0116	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PSN1_PANCREAS	1	1	0.0695	FALSE	499	1288	110	792	0	FALSE	ACH-000320
PSN1_PANCREAS	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0579	0.0116	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PSN1_PANCREAS	0.86	1	0.0695	FALSE	292	1546	117	613	0	FALSE	ACH-000320
PSN1_PANCREAS	PVT1--MYC	4	5	PVT1	1202	chr8:128806980:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	739	2632	0.01	0	0.0463	0.0579	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	PSN1_PANCREAS	0	0.01	0.1042	TRUE	3	14	0	24	0	FALSE	ACH-000320
PSN1_PANCREAS	RP11-680G10.1--GSE1	4	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	72	1	0.11	0.0463	0.0579	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PSN1_PANCREAS	0.11	1	0.1042	TRUE	465	1949	224	605	0	FALSE	ACH-000320
PSN1_PANCREAS	ANP32E--NCL	5	0	ANP32E	7076	chr1:150199015:-	NCL	19455	chr2:232326416:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0	ANP32E->acidic_nuclear_phosphoprotein_32_family_member_E,chr1:150190717-150208504:-,NCL->chr2:232318242-232348352:-,nucleolin	PSN1_PANCREAS	1	1	0.0579	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	HTRA3--S100A6	5	0	HTRA3	6950	chr4:8295867:+	S100A6	16328	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0	HTRA3->HtrA_serine_peptidase_3,chr4:8271492-8308838:+,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	PSN1_PANCREAS	1	1	0.0579	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	MT-CO3--MT-ATP6	3	8	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	3	0.92	0.79	0.0347	0.0926	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PSN1_PANCREAS	0.79	0.92	0.1273	FALSE	189	492	56	216	0	FALSE	ACH-000320
PSN1_PANCREAS	MUC5AC--MT-ND4L	5	0	MUC5AC	10658	chr11:1212965:+	MT-ND4L	23062	chrM:10474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0	MUC5AC->Oncogene{Bushman},chr11:1151580-1222364:+,mucin_5AC,_oligomeric_mucus/gel-forming,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PSN1_PANCREAS	1	1	0.0579	FALSE	0	0	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	PVT1--CASC8	3	8	PVT1	1202	chr8:128806980:+	CASC8	35426	chr8:128335399:-	ONLY_REF_SPLICE	YES	739	0	0.01	1	0.0347	0.0926	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	PSN1_PANCREAS	0.01	1	0.1273	TRUE	0	0	0	5	0	FALSE	ACH-000320
PSN1_PANCREAS	RPS6--B2M	5	0	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	PSN1_PANCREAS	1	1	0.0579	TRUE	0	0	0	28	0	FALSE	ACH-000320
PSN1_PANCREAS	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PSN1_PANCREAS	1	1	0.0579	FALSE	0	0	0	189	0	FALSE	ACH-000320
PSN1_PANCREAS	MT-ND1--MT-RNR2	4	3	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	52	0	0.12	1	0.0463	0.0347	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PSN1_PANCREAS	0.12	1	0.081	FALSE	114	26	4	85	0	FALSE	ACH-000320
PSN1_PANCREAS	MT-ND4--MT-CO1	4	3	MT-ND4	1773	chrM:11532:+	MT-CO1	5916	chrM:6441:+	INCL_NON_REF_SPLICE	YES	15483	21213	0	0	0.0463	0.0347	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PSN1_PANCREAS	0	0	0.081	FALSE	19	92	11	16	0	FALSE	ACH-000320
PSN1_PANCREAS	CALM3--MT-ND4L	4	1	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	717	0	0.01	1	0.0463	0.0116	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PSN1_PANCREAS	0.01	1	0.0579	FALSE	1	1	0	107	0	FALSE	ACH-000320
PSN1_PANCREAS	PVT1--MYC	1	13	PVT1	18060	chr8:129022690:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	33	2698	0.3	0.01	0.0116	0.1504	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	PSN1_PANCREAS	0.01	0.3	0.162	TRUE	0	0	0	3	0	FALSE	ACH-000320
PSN1_PANCREAS	PVT1--MYC	2	9	PVT1	13955	chr8:129001537:+	MYC	30686	chr8:128750538:+	ONLY_REF_SPLICE	YES	211	2408	0.05	0	0.0231	0.1041	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	PSN1_PANCREAS	0	0.05	0.1272	TRUE	0	0	0	3	0	FALSE	ACH-000320
PSN1_PANCREAS	C17orf76-AS1--RHOA	4	0	C17orf76-AS1	1593	chr17:16342728:+	RHOA	16477	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0463	0	C17orf76-AS1->chr17:16342136-16381992:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	PSN1_PANCREAS	1	1	0.0463	TRUE	0	0	0	4	0	TRUE	ACH-000320
PSN1_PANCREAS	LPIN2--MYL12B	4	0	LPIN2	1229	chr18:3013085:-	MYL12B	32733	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0463	0	LPIN2->chr18:2916992-3013313:-,lipin_2,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	PSN1_PANCREAS	1	1	0.0463	TRUE	0	1	0	4	0	TRUE	ACH-000320
PSN1_PANCREAS	MT-ND1--MT-RNR2	3	4	MT-ND1	1297	chrM:3603:+	MT-RNR2	5502	chrM:2216:+	INCL_NON_REF_SPLICE	YES	79	13235	0.08	0	0.0347	0.0463	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PSN1_PANCREAS	0	0.08	0.081	FALSE	120	26	5	87	0	FALSE	ACH-000320
PSN1_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PSN1_PANCREAS	1	1	0.0463	FALSE	499	1288	110	792	0	FALSE	ACH-000320
PSN1_PANCREAS	MUC5AC--MT-ND4L	4	0	MUC5AC	10583	chr11:1212890:+	MT-ND4L	23059	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0463	0	MUC5AC->Oncogene{Bushman},chr11:1151580-1222364:+,mucin_5AC,_oligomeric_mucus/gel-forming,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PSN1_PANCREAS	1	1	0.0463	FALSE	0	0	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	PVT1--MYC	1	12	PVT1	18060	chr8:129022690:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	NO	33	2632	0.28	0	0.0116	0.1389	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	PSN1_PANCREAS	0	0.28	0.1505	TRUE	0	0	0	3	0	FALSE	ACH-000320
PSN1_PANCREAS	RCC1--SNX5	4	0	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0463	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	PSN1_PANCREAS	1	1	0.0463	TRUE	0	5	0	11	0	TRUE	ACH-000320
PSN1_PANCREAS	MT-ND1--MT-TL1	3	3	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	7	0	0.46	1	0.0347	0.0347	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	PSN1_PANCREAS	0.46	1	0.0694	FALSE	210	95	5	49	0	FALSE	ACH-000320
PSN1_PANCREAS	MT-TA--MT-TC	3	3	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0.0347	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PSN1_PANCREAS	1	1	0.0694	FALSE	462	80	0	856	0	FALSE	ACH-000320
PSN1_PANCREAS	PVT1--CASC8	1	9	PVT1	13955	chr8:129001537:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	NO	211	1	0.05	0.91	0.0116	0.1041	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	PSN1_PANCREAS	0.05	0.91	0.1157	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	PVT1--MYC	2	5	PVT1	2520	chr8:128808317:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	718	2698	0.01	0	0.0231	0.0579	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	PSN1_PANCREAS	0	0.01	0.081	FALSE	0	6	0	6	0	FALSE	ACH-000320
PSN1_PANCREAS	SLC1A5--MT-ND4L	3	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	812	0	0	1	0.0347	0.0116	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PSN1_PANCREAS	0	1	0.0463	FALSE	0	0	0	189	0	FALSE	ACH-000320
PSN1_PANCREAS	WWOX--FHIT	3	1	WWOX	23541	chr16:78466649:+	FHIT	48299	chr3:59908140:-	ONLY_REF_SPLICE	YES	9	18	0.31	0.18	0.0347	0.0116	WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	PSN1_PANCREAS	0.18	0.31	0.0463	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	MT-ND4--MT-CO1	3	0	MT-ND4	1234	chrM:10993:+	MT-CO1	6016	chrM:6541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PSN1_PANCREAS	1	1	0.0347	FALSE	19	89	11	16	0	FALSE	ACH-000320
PSN1_PANCREAS	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	64	0	0.09	1	0.0231	0.0463	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PSN1_PANCREAS	0.09	1	0.0694	FALSE	164	806	69	479	0	FALSE	ACH-000320
PSN1_PANCREAS	PVT1--MYC	1	8	PVT1	8346	chr8:128903244:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	462	2698	0.02	0	0.0116	0.0926	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	PSN1_PANCREAS	0	0.02	0.1042	TRUE	0	5	0	7	2	FALSE	ACH-000320
PSN1_PANCREAS	PVT1--MYC	1	8	PVT1	10746	chr8:128951922:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	325	2632	0.03	0	0.0116	0.0926	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	PSN1_PANCREAS	0	0.03	0.1042	TRUE	0	1	0	4	0	FALSE	ACH-000320
PSN1_PANCREAS	VIM--RPS28	3	0	VIM	2114	chr10:17271371:+	RPS28	12553	chr19:8386390:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	VIM->chr10:17270258-17279592:+,vimentin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	PSN1_PANCREAS	1	1	0.0347	TRUE	0	0	0	4	0	TRUE	ACH-000320
PSN1_PANCREAS	CCAT1--PVT1	2	2	CCAT1	1279	chr8:128231055:-	PVT1	16709	chr8:128951754:+	ONLY_REF_SPLICE	YES	349	407	0.01	0.01	0.0231	0.0231	CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	PSN1_PANCREAS	0.01	0.01	0.0462	FALSE	0	0	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	1	6	0.75	0.33	0.0231	0.0116	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PSN1_PANCREAS	0.33	0.75	0.0347	FALSE	25	145	6	90	0	FALSE	ACH-000320
PSN1_PANCREAS	ABCC1--RRN3P1	2	0	ABCC1	25239	chr16:16196574:+	RRN3P1	45710	chr16:21830082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,RRN3P1->RRN3_homolog,_RNA_polymerase_I_transcription_factor_pseudogene_1,chr16:21807951-21831731:-	PSN1_PANCREAS	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	PSN1_PANCREAS	1	1	0.0231	TRUE	0	6	0	16	3	TRUE	ACH-000320
PSN1_PANCREAS	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	PSN1_PANCREAS	1	1	0.0231	TRUE	0	0	0	11	0	TRUE	ACH-000320
PSN1_PANCREAS	HNRNPU--PRRC2C	2	0	HNRNPU	10119	chr1:245018726:-	PRRC2C	53892	chr1:171556142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	HNRNPU->chr1:245014468-245027844:-,heterogeneous_nuclear_ribonucleoprotein_U_(scaffold_attachment_factor_A),PRRC2C->chr1:171454651-171562650:+,proline_rich_coiled-coil_2C	PSN1_PANCREAS	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	INPP5A--PWWP2B	2	0	INPP5A	11782	chr10:134563349:+	PWWP2B	25739	chr10:134230565:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_FI:{Skin=[count:6=pct:1.9],Brain=[count:1=pct:0.2],Blood=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=6;pct=0.07%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Pancreas=1,Colon_-_Sigmoid=1},INPP5A->chr10:134351324-134596979:+,inositol_polyphosphate-5-phosphatase_A,PWWP2B->PWWP_domain_containing_2B,chr10:134210672-134231367:+	PSN1_PANCREAS	1	1	0.0231	TRUE	2	1	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	PTPN1--PTGIS	2	0	PTPN1	1237	chr20:49127127:+	PTGIS	21144	chr20:48140776:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	PTPN1->chr20:49126891-49201299:+,protein_tyrosine_phosphatase,_non-receptor_type_1,PTGIS->Oncogene{Bushman},chr20:48120411-48184683:-,prostaglandin_I2_(prostacyclin)_synthase	PSN1_PANCREAS	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	PVT1--MYC	2	0	PVT1	1202	chr8:128806980:+	MYC	32414	chr8:128752642:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	PSN1_PANCREAS	1	1	0.0231	TRUE	0	3	0	4	1	FALSE	ACH-000320
PSN1_PANCREAS	RBM6--DAG1	2	0	RBM6	1219	chr3:49977658:+	DAG1	41920	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	PSN1_PANCREAS	1	1	0.0231	TRUE	0	0	0	2	0	TRUE	ACH-000320
PSN1_PANCREAS	SDCBP2-AS1--AFMID	2	0	SDCBP2-AS1	1125	chr20:1306173:+	AFMID	22548	chr17:76202027:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	SDCBP2-AS1->SDCBP2_antisense_RNA_1,chr20:1306049-1359378:+,AFMID->arylformamidase,chr17:76183398-76203782:+	PSN1_PANCREAS	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	SLC38A10--SLC16A3	2	0	SLC38A10	17526	chr17:79225995:-	SLC16A3	33547	chr17:80193859:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	HGNC_GENEFAM,SLC38A10->chr17:79218800-79269347:-,solute_carrier_family_38_member_10,SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3	PSN1_PANCREAS	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	SPAG9--NME2	2	0	SPAG9	1512	chr17:49197715:-	NME2	53943	chr17:49247298:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	LOCAL_INVERSION:-:+:[32725],SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,NME2->NME/NM23_nucleoside_diphosphate_kinase_2,chr17:49230951-49249105:+	PSN1_PANCREAS	1	1	0.0231	TRUE	0	1	0	2	0	TRUE	ACH-000320
PSN1_PANCREAS	TRA2A--HNRNPC	2	0	TRA2A	1253	chr7:23571408:-	HNRNPC	21224	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0231	0	HGNC_GENEFAM,TRA2A->chr7:23544399-23571660:-,transformer_2_alpha_homolog,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	PSN1_PANCREAS	1	1	0.0231	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	CCAT1--CASC8	1	3	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	349	1	0.01	0.8	0.0116	0.0347	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	PSN1_PANCREAS	0.01	0.8	0.0463	FALSE	0	26	0	18	24	FALSE	ACH-000320
PSN1_PANCREAS	RP11-114H23.1--RP11-114H23.2	1	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0.0347	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	PSN1_PANCREAS	1	1	0.0463	FALSE	81	155	12	160	0	FALSE	ACH-000320
PSN1_PANCREAS	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0.0347	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PSN1_PANCREAS	1	1	0.0463	FALSE	93	270	15	244	0	FALSE	ACH-000320
PSN1_PANCREAS	CPSF6--C9orf3	1	2	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	NO	194	595	0.02	0.01	0.0116	0.0231	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	PSN1_PANCREAS	0.01	0.02	0.0347	FALSE	53	99	2	44	0	FALSE	ACH-000320
PSN1_PANCREAS	NRIP1--AF127936.7	1	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	31	0	0.09	1	0.0116	0.0231	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PSN1_PANCREAS	0.09	1	0.0347	FALSE	125	705	46	456	0	FALSE	ACH-000320
PSN1_PANCREAS	TGIF1--MYL12B	1	2	TGIF1	8043	chr18:3450503:+	MYL12B	20407	chr18:3272882:+	ONLY_REF_SPLICE	YES	254	274	0.01	0.01	0.0116	0.0231	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Lung=1},TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	PSN1_PANCREAS	0.01	0.01	0.0347	FALSE	0	2	0	6	0	FALSE	ACH-000320
PSN1_PANCREAS	ALDOA--MYC	1	1	ALDOA	11578	chr16:30081350:+	MYC	17241	chr8:128750538:+	ONLY_REF_SPLICE	NO	2603	2408	0	0	0.0116	0.0116	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	PSN1_PANCREAS	0	0	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	CD44--PDHX	1	1	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	2417	248	0	0.01	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	PSN1_PANCREAS	0	0.01	0.0232	FALSE	0	7	0	19	1	FALSE	ACH-000320
PSN1_PANCREAS	DANCR--FLNB	1	1	DANCR	1530	chr4:53579126:+	FLNB	8751	chr3:58062773:+	ONLY_REF_SPLICE	NO	613	1128	0	0	0.0116	0.0116	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B	PSN1_PANCREAS	0	0	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	DOCK1--MGMT	1	1	DOCK1	52633	chr10:129231692:+	MGMT	67032	chr10:131506159:+	ONLY_REF_SPLICE	YES	153	398	0.01	0.01	0.0116	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,MGMT->O-6-methylguanine-DNA_methyltransferase,chr10:131265448-131566271:+	PSN1_PANCREAS	0.01	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	GNE--CLTA	1	1	GNE	1163	chr9:36276891:-	CLTA	22890	chr9:36198976:+	ONLY_REF_SPLICE	YES	32	939	0.06	0	0.0116	0.0116	GTEx_v2:{count=2;pct=0.02%;dist=Breast_-_Mammary_Tissue=1,Colon_-_Transverse=1},NEIGHBORS_OVERLAP:-:+:[62615],GNE->chr9:36214438-36277053:-,glucosamine_(UDP-N-acetyl)-2-epimerase/N-acetylmannosamine_kinase,CLTA->chr9:36190853-36304778:+,clathrin_light_chain_A	PSN1_PANCREAS	0	0.06	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	MFSD10--CAP1	1	1	MFSD10	4633	chr4:2932954:-	CAP1	14773	chr1:40530146:+	ONLY_REF_SPLICE	YES	427	2129	0	0	0.0116	0.0116	MFSD10->chr4:2932288-2936586:-,major_facilitator_superfamily_domain_containing_10,CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+	PSN1_PANCREAS	0	0	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	MTERF--ITM2C	1	1	MTERF	1666	chr7:91509369:-	ITM2C	17365	chr2:231740335:+	ONLY_REF_SPLICE	YES	8	644	0.2	0	0.0116	0.0116	MTERF->chr7:91321323-91510034:-,ITM2C->chr2:231729354-231743963:+,integral_membrane_protein_2C	PSN1_PANCREAS	0	0.2	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	64	6	0.03	0.25	0.0116	0.0116	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PSN1_PANCREAS	0.03	0.25	0.0232	FALSE	8	57	1	47	0	FALSE	ACH-000320
PSN1_PANCREAS	PDHX--CD44	1	1	PDHX	1987	chr11:34938362:+	CD44	20666	chr11:35198122:+	ONLY_REF_SPLICE	YES	260	2438	0.01	0	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	PSN1_PANCREAS	0	0.01	0.0232	FALSE	0	0	0	2	0	FALSE	ACH-000320
PSN1_PANCREAS	PHLPP2--AP1G1	1	1	PHLPP2	1933	chr16:71757672:-	AP1G1	46199	chr16:71798629:-	ONLY_REF_SPLICE	YES	3	59	0.4	0.03	0.0116	0.0116	LOCAL_REARRANGEMENT:-:[4309],PHLPP2->Oncogene{Bushman},PH_domain_and_leucine_rich_repeat_protein_phosphatase_2,chr16:71671738-71758604:-,AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-	PSN1_PANCREAS	0.03	0.4	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	PPP1R9A--HERPUD2	1	1	PPP1R9A	5004	chr7:94540820:+	HERPUD2	35740	chr7:35712888:-	ONLY_REF_SPLICE	NO	13	61	0.13	0.03	0.0116	0.0116	PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A,HERPUD2->HERPUD_family_member_2,chr7:35672269-35735181:-	PSN1_PANCREAS	0.03	0.13	0.0232	TRUE	0	0	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0116	0.0116	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PSN1_PANCREAS	0.67	1	0.0232	FALSE	515	4851	409	746	0	FALSE	ACH-000320
PSN1_PANCREAS	SUN1--ADAP1	1	1	SUN1	31224	chr7:927156:+	ADAP1	48428	chr7:959687:-	ONLY_REF_SPLICE	NO	156	80	0.01	0.02	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Aorta=1,Prostate=1,Uterus=1},LOCAL_INVERSION:+:-:[1468],SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+,ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-	PSN1_PANCREAS	0.01	0.02	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	UBAP1--CAPRIN2	1	1	UBAP1	1236	chr9:34179238:+	CAPRIN2	16211	chr12:30906493:-	ONLY_REF_SPLICE	YES	180	616	0.01	0	0.0116	0.0116	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,CAPRIN2->caprin_family_member_2,chr12:30862486-30907885:-	PSN1_PANCREAS	0	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	WWOX--FHIT	1	1	WWOX	23541	chr16:78466649:+	FHIT	50436	chr3:59738047:-	ONLY_REF_SPLICE	YES	9	18	0.18	0.1	0.0116	0.0116	WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	PSN1_PANCREAS	0.1	0.18	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000320
PSN1_PANCREAS	ZFAS1--NOP56	1	1	ZFAS1	2031	chr20:47895745:+	NOP56	11762	chr20:2635971:+	ONLY_REF_SPLICE	YES	1683	1089	0	0	0.0116	0.0116	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,NOP56->NOP56_ribonucleoprotein,chr20:2632791-2639039:+	PSN1_PANCREAS	0	0	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000320
PSN1_PANCREAS	ZFAS1--RNF149	1	1	ZFAS1	2031	chr20:47895745:+	RNF149	20350	chr2:101888206:-	ONLY_REF_SPLICE	YES	1683	14	0	0.12	0.0116	0.0116	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	PSN1_PANCREAS	0	0.12	0.0232	FALSE	0	1	0	3	1	FALSE	ACH-000320
SW1990_PANCREAS	TIMM23B--LINC00843	169	44	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.4173	0.6293	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SW1990_PANCREAS	1	1	3.0466	TRUE	508	994	45	981	0	FALSE	ACH-000155
SW1990_PANCREAS	MIER1--PTMA	118	0	MIER1	11096	chr1:67423844:+	PTMA	31863	chr2:232576070:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6878	0	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SW1990_PANCREAS	1	1	1.6878	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	TIMM23--RP11-464F9.1	101	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	393	5	0.21	0.95	1.4446	0.0572	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SW1990_PANCREAS	0.21	0.95	1.5018	TRUE	519	3926	326	965	0	FALSE	ACH-000155
SW1990_PANCREAS	LINC00152--AC093616.4	56	15	LINC00152	14196	chr2:87906288:+	AC093616.4	17233	chr2:88000503:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.801	0.2146	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	SW1990_PANCREAS	1	1	1.0156	FALSE	0	0	0	14	0	FALSE	ACH-000155
SW1990_PANCREAS	ZNF654--HMGB2	51	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7295	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SW1990_PANCREAS	1	1	0.7295	TRUE	0	0	0	518	0	FALSE	ACH-000155
SW1990_PANCREAS	MT-TA--MT-TC	47	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6723	0.1144	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW1990_PANCREAS	1	1	0.7867	FALSE	462	80	0	856	0	FALSE	ACH-000155
SW1990_PANCREAS	TMCO3--RBM14	37	39	TMCO3	9896	chr13:114175048:+	RBM14	28154	chr11:66393932:+	ONLY_REF_SPLICE	YES	91	69	0.46	0.52	0.5292	0.5578	{Klijn_CCL:Pancreas=1},TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,RBM14->RNA_binding_motif_protein_14,chr11:66384053-66394818:+	SW1990_PANCREAS	0.46	0.52	1.087	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	KANSL1--ARL17B	24	11	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	16	50	0.69	0.41	0.3433	0.1573	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SW1990_PANCREAS	0.41	0.69	0.5006	TRUE	181	1564	124	196	0	FALSE	ACH-000155
SW1990_PANCREAS	NRIP1--AF127936.7	23	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.329	0.0286	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW1990_PANCREAS	1	1	0.3576	FALSE	292	1546	117	613	0	FALSE	ACH-000155
SW1990_PANCREAS	MIER1--PTMA	23	0	MIER1	11096	chr1:67423844:+	PTMA	32433	chr2:232576640:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.329	0	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SW1990_PANCREAS	1	1	0.329	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	MT-ND6--MT-TE	21	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3004	0.0286	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1990_PANCREAS	1	1	0.329	FALSE	499	1288	110	792	0	FALSE	ACH-000155
SW1990_PANCREAS	TADA2A--DMD	17	8	TADA2A	11279	chr17:35804870:+	DMD	105496	chrX:31341775:-	ONLY_REF_SPLICE	YES	35	0	0.42	1	0.2432	0.1144	{Klijn_CCL:Pancreas=1},TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,DMD->chrX:31115794-33357558:-,dystrophin	SW1990_PANCREAS	0.42	1	0.3576	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	ZNRD1-AS1--TRIM40	16	8	ZNRD1-AS1	11211	chr6:29989444:-	TRIM40	33021	chr6:30113771:+	ONLY_REF_SPLICE	YES	4	0	0.86	1	0.2289	0.1144	LOCAL_INVERSION:-:+:[74468],ZNRD1-AS1->chr6:29968788-30029417:-,TRIM40->chr6:30103885-30116512:+,tripartite_motif_containing_40	SW1990_PANCREAS	0.86	1	0.3433	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	MIER1--PTMA	16	0	MIER1	11113	chr1:67423861:+	PTMA	31884	chr2:232576091:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2289	0	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SW1990_PANCREAS	1	1	0.2289	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	MIER1--PTMA	14	0	MIER1	11096	chr1:67423844:+	PTMA	31873	chr2:232576080:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2002	0	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SW1990_PANCREAS	1	1	0.2002	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	TMCO3--RBM14	3	40	TMCO3	9896	chr13:114175048:+	RBM14	27259	chr11:66393037:+	INCL_NON_REF_SPLICE	YES	91	35	0.32	0.55	0.0429	0.5721	{Klijn_CCL:Pancreas=1},TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,RBM14->RNA_binding_motif_protein_14,chr11:66384053-66394818:+	SW1990_PANCREAS	0.32	0.55	0.615	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	RP11-680G10.1--GSE1	12	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.93	0.1716	0.0286	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW1990_PANCREAS	0.93	1	0.2002	TRUE	458	1351	185	561	0	FALSE	ACH-000155
SW1990_PANCREAS	ITSN1--C21orf49	9	9	ITSN1	1314	chr21:35015019:+	C21orf49	75345	chr21:34258240:+	ONLY_REF_SPLICE	YES	48	0	0.27	1	0.1287	0.1287	ITSN1->chr21:35014706-35272165:+,intersectin_1,C21orf49->chr21:34144411-34266043:+	SW1990_PANCREAS	0.27	1	0.2574	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	ZNRD1-AS1--TRIM40	10	3	ZNRD1-AS1	4526	chr6:30025892:-	TRIM40	33021	chr6:30113771:+	ONLY_REF_SPLICE	YES	10	0	0.57	1	0.143	0.0429	LOCAL_INVERSION:-:+:[74468],ZNRD1-AS1->chr6:29968788-30029417:-,TRIM40->chr6:30103885-30116512:+,tripartite_motif_containing_40	SW1990_PANCREAS	0.57	1	0.1859	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	NPM1P24--SET	10	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.143	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SW1990_PANCREAS	1	1	0.143	TRUE	0	0	0	434	0	FALSE	ACH-000155
SW1990_PANCREAS	MT-TA--MT-TC	8	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1144	0.1001	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW1990_PANCREAS	1	1	0.2145	FALSE	462	80	0	856	0	FALSE	ACH-000155
SW1990_PANCREAS	XXbac-BPG252P9.9--IFI27	9	3	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	3694	2	0	0.86	0.1287	0.0429	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	SW1990_PANCREAS	0	0.86	0.1716	TRUE	0	2	0	13	2	TRUE	ACH-000155
SW1990_PANCREAS	MT-ND6--MT-TE	7	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1001	0.143	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1990_PANCREAS	1	1	0.2431	FALSE	499	1288	110	792	0	FALSE	ACH-000155
SW1990_PANCREAS	RP11-96H19.1--RP11-446N19.1	8	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1144	0.0858	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW1990_PANCREAS	0.88	1	0.2002	FALSE	515	4851	409	746	0	FALSE	ACH-000155
SW1990_PANCREAS	MT-ND6--MT-TE	8	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1144	0.0286	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1990_PANCREAS	1	1	0.143	FALSE	499	1288	110	792	0	FALSE	ACH-000155
SW1990_PANCREAS	TMEM241--NPC1	7	5	TMEM241	4388	chr18:20979530:-	NPC1	44141	chr18:21125113:-	ONLY_REF_SPLICE	YES	7	21	0.63	0.36	0.1001	0.0715	LOCAL_REARRANGEMENT:-:[68223],TMEM241->chr18:20777108-21017925:-,transmembrane_protein_241,NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-	SW1990_PANCREAS	0.36	0.63	0.1716	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	MIER1--PTMA	8	0	MIER1	11113	chr1:67423861:+	PTMA	32444	chr2:232576651:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1144	0	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SW1990_PANCREAS	1	1	0.1144	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	MT-ND6--MT-TE	4	16	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0572	0.2289	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1990_PANCREAS	1	1	0.2861	FALSE	499	1288	110	792	0	FALSE	ACH-000155
SW1990_PANCREAS	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1144	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW1990_PANCREAS	1	1	0.1144	FALSE	462	80	0	856	0	FALSE	ACH-000155
SW1990_PANCREAS	NRIP1--AF127936.7	6	8	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.5	1	0.0858	0.1144	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW1990_PANCREAS	0.5	1	0.2002	FALSE	125	705	46	456	0	FALSE	ACH-000155
SW1990_PANCREAS	CTSC--RPL13A	7	0	CTSC	19843	chr11:88027207:-	RPL13A	26005	chr19:49994730:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1001	0	CTSC->cathepsin_C,chr11:88026760-88070955:-,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	SW1990_PANCREAS	1	1	0.1001	TRUE	0	0	0	2	0	TRUE	ACH-000155
SW1990_PANCREAS	MT-TA--MT-TC	5	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0.1144	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW1990_PANCREAS	1	1	0.1859	FALSE	462	80	0	856	0	FALSE	ACH-000155
SW1990_PANCREAS	RP11-680G10.1--GSE1	6	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0858	0.0286	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW1990_PANCREAS	0.89	1	0.1144	TRUE	465	1949	224	605	0	FALSE	ACH-000155
SW1990_PANCREAS	DHX36--ARHGEF26-AS1	6	1	DHX36	7825	chr3:154027442:-	ARHGEF26-AS1	40944	chr3:153748168:-	ONLY_REF_SPLICE	YES	53	0	0.12	1	0.0858	0.0143	DHX36->DEAH-box_helicase_36,chr3:153990335-154042286:-,ARHGEF26-AS1->ARHGEF26_antisense_RNA_1,chr3:153742190-153839121:-	SW1990_PANCREAS	0.12	1	0.1001	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	NRIP1--AF127936.7	2	17	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	24	0	0.44	1	0.0286	0.2432	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW1990_PANCREAS	0.44	1	0.2718	FALSE	164	806	69	479	0	FALSE	ACH-000155
SW1990_PANCREAS	TMEM241--NPC1	6	1	TMEM241	3306	chr18:21001331:-	NPC1	44141	chr18:21125113:-	ONLY_REF_SPLICE	YES	12	21	0.37	0.25	0.0858	0.0143	LOCAL_REARRANGEMENT:-:[68223],TMEM241->chr18:20777108-21017925:-,transmembrane_protein_241,NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-	SW1990_PANCREAS	0.25	0.37	0.1001	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	IGFBP4--NPM1	6	0	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0858	0	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	SW1990_PANCREAS	1	1	0.0858	TRUE	0	0	0	38	0	FALSE	ACH-000155
SW1990_PANCREAS	MIER1--PTMA	6	0	MIER1	11111	chr1:67423859:+	PTMA	32424	chr2:232576631:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0858	0	MIER1->MIER1_transcriptional_regulator,Oncogene{Bushman},chr1:67390578-67454302:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	SW1990_PANCREAS	1	1	0.0858	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	RP11-96H19.1--RP11-446N19.1	4	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.0572	0.1144	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW1990_PANCREAS	0.86	1	0.1716	FALSE	407	2205	196	549	0	FALSE	ACH-000155
SW1990_PANCREAS	JSRP1--RPS28	5	2	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0715	0.0286	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SW1990_PANCREAS	0.88	1	0.1001	TRUE	0	1	0	84	1	FALSE	ACH-000155
SW1990_PANCREAS	GET4--TMEM222	5	0	GET4	6761	chr7:926268:+	TMEM222	16434	chr1:27648764:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0	GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4,TMEM222->chr1:27648651-27662891:+,transmembrane_protein_222	SW1990_PANCREAS	1	1	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	JSRP1--RPS28	4	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0572	0.0286	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SW1990_PANCREAS	0.86	1	0.0858	TRUE	0	1	0	84	1	FALSE	ACH-000155
SW1990_PANCREAS	PRR16--CTD-2334D19.1	4	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0572	0.0286	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SW1990_PANCREAS	0.67	1	0.0858	FALSE	56	216	12	147	0	FALSE	ACH-000155
SW1990_PANCREAS	ZNRD1-AS1--TRIM40	3	6	ZNRD1-AS1	10116	chr6:30002685:-	TRIM40	33021	chr6:30113771:+	ONLY_REF_SPLICE	YES	8	0	0.53	1	0.0429	0.0858	LOCAL_INVERSION:-:+:[74468],ZNRD1-AS1->chr6:29968788-30029417:-,TRIM40->chr6:30103885-30116512:+,tripartite_motif_containing_40	SW1990_PANCREAS	0.53	1	0.1287	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	MT-ND6--MT-TE	3	5	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0.0715	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1990_PANCREAS	1	1	0.1144	FALSE	499	1288	110	792	0	FALSE	ACH-000155
SW1990_PANCREAS	MT-TA--MT-TC	3	5	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0.0715	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW1990_PANCREAS	1	1	0.1144	FALSE	462	80	0	856	0	FALSE	ACH-000155
SW1990_PANCREAS	NPM1P24--SET	4	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	34	961	0.13	0.01	0.0572	0.0143	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SW1990_PANCREAS	0.01	0.13	0.0715	FALSE	0	0	0	434	0	FALSE	ACH-000155
SW1990_PANCREAS	NPM1P46--HMGB1	4	0	NPM1P46	1679	chr2:198244938:-	HMGB1	12190	chr13:31035581:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0572	0	NPM1P46->chr2:198244425-198245616:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_46,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	SW1990_PANCREAS	1	1	0.0572	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	RP11-96H19.1--RP11-446N19.1	2	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0.1001	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW1990_PANCREAS	1	1	0.1287	FALSE	467	2173	244	435	0	FALSE	ACH-000155
SW1990_PANCREAS	IGFBP4--NPM1	3	0	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0429	0	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	SW1990_PANCREAS	1	1	0.0429	TRUE	0	0	0	38	0	FALSE	ACH-000155
SW1990_PANCREAS	ITSN1--C21orf49	2	3	ITSN1	1314	chr21:35015019:+	C21orf49	76482	chr21:34265886:+	ONLY_REF_SPLICE	NO	48	0	0.09	1	0.0286	0.0429	ITSN1->chr21:35014706-35272165:+,intersectin_1,C21orf49->chr21:34144411-34266043:+	SW1990_PANCREAS	0.09	1	0.0715	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	TADA2A--DMD	1	6	TADA2A	10206	chr17:35802753:+	DMD	105496	chrX:31341775:-	ONLY_REF_SPLICE	YES	50	0	0.12	1	0.0143	0.0858	{Klijn_CCL:Pancreas=1},TADA2A->chr17:35766965-35839835:+,transcriptional_adaptor_2A,DMD->chrX:31115794-33357558:-,dystrophin	SW1990_PANCREAS	0.12	1	0.1001	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	C17orf76-AS1--CTD-2354A18.1	2	1	C17orf76-AS1	1593	chr17:16342728:+	CTD-2354A18.1	16095	chr18:70999698:+	ONLY_REF_SPLICE	YES	47	204	0.06	0.01	0.0286	0.0143	C17orf76-AS1->chr17:16342136-16381992:+,CTD-2354A18.1->chr18:70992176-71017113:+	SW1990_PANCREAS	0.01	0.06	0.0429	FALSE	0	0	0	3	0	FALSE	ACH-000155
SW1990_PANCREAS	RNF126--BSG	2	1	RNF126	1231	chr19:663047:-	BSG	17444	chr19:579500:+	ONLY_REF_SPLICE	YES	51	596	0.06	0.01	0.0286	0.0143	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Adrenal_Gland=1},LOCAL_INVERSION:-:+:[64033],RNF126->chr19:647526-663277:-,ring_finger_protein_126,BSG->basigin_(Ok_blood_group),chr19:571297-583493:+	SW1990_PANCREAS	0.01	0.06	0.0429	FALSE	0	2	0	12	0	FALSE	ACH-000155
SW1990_PANCREAS	RP11-114H23.1--RP11-114H23.2	2	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0286	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SW1990_PANCREAS	1	1	0.0286	FALSE	81	155	12	160	0	FALSE	ACH-000155
SW1990_PANCREAS	DHX36--ARHGEF26-AS1	1	1	DHX36	7825	chr3:154027442:-	ARHGEF26-AS1	40947	chr3:153748165:-	ONLY_REF_SPLICE	YES	53	0	0.04	1	0.0143	0.0143	DHX36->DEAH-box_helicase_36,chr3:153990335-154042286:-,ARHGEF26-AS1->ARHGEF26_antisense_RNA_1,chr3:153742190-153839121:-	SW1990_PANCREAS	0.04	1	0.0286	TRUE	0	0	0	1	0	TRUE	ACH-000155
SW1990_PANCREAS	MINOS1--CAPZB	1	1	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	97	46	0.02	0.04	0.0143	0.0143	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	SW1990_PANCREAS	0.02	0.04	0.0286	TRUE	2	7	0	21	0	FALSE	ACH-000155
SW1990_PANCREAS	SCAF11--NELL2	1	1	SCAF11	2468	chr12:46384136:-	NELL2	56549	chr12:44914012:-	ONLY_REF_SPLICE	YES	111	0	0.02	1	0.0143	0.0143	SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-,NELL2->chr12:44902058-45315631:-,neural_EGFL_like_2	SW1990_PANCREAS	0.02	1	0.0286	TRUE	0	0	0	1	0	FALSE	ACH-000155
ECGI10_OESOPHAGUS	AC104389.28--HBE1	257	115	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	35	1	0.91	1	2.3509	1.052	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	ECGI10_OESOPHAGUS	0.91	1	3.4029	TRUE	0	48	0	65	48	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TN	139	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2715	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECGI10_OESOPHAGUS	1	1	1.2715	FALSE	369	2501	205	193	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	SNRPD1--AC016629.3	85	13	SNRPD1	1177	chr18:19192404:+	AC016629.3	8883	chr19:59110627:-	INCL_NON_REF_SPLICE	YES	239	0	0.29	1	0.7776	0.1189	SNRPD1->chr18:19192228-19210417:+,small_nuclear_ribonucleoprotein_D1_polypeptide,AC016629.3->chr19:59105263-59110722:-	ECGI10_OESOPHAGUS	0.29	1	0.8965	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	CD44--PAMR1	73	31	CD44	1501	chr11:35160917:+	PAMR1	35703	chr11:35515820:-	ONLY_REF_SPLICE	YES	1259	0	0.08	1	0.6678	0.2836	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PAMR1->chr11:35453370-35551848:-,peptidase_domain_containing_associated_with_muscle_regeneration_1	ECGI10_OESOPHAGUS	0.08	1	0.9514	TRUE	0	0	0	2	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TC	78	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7135	0.0457	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ECGI10_OESOPHAGUS	1	1	0.7592	FALSE	462	80	0	856	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	AC104389.28--HBE1	26	127	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	35	0	0.81	1	0.2378	1.1618	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	ECGI10_OESOPHAGUS	0.81	1	1.3996	TRUE	0	35	0	55	35	FALSE	ACH-000305
ECGI10_OESOPHAGUS	TIMM23B--LINC00843	51	4	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4665	0.0366	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ECGI10_OESOPHAGUS	1	1	0.5031	TRUE	508	994	45	981	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND6--MT-TE	34	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.311	0.0091	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECGI10_OESOPHAGUS	1	1	0.3201	FALSE	499	1288	110	792	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TN	14	78	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.1281	0.7135	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECGI10_OESOPHAGUS	1	1	0.8416	FALSE	369	2501	205	193	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	TIMM23--RP11-464F9.1	33	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3019	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ECGI10_OESOPHAGUS	1	1	0.3019	TRUE	519	3926	326	965	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TN	26	26	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2378	0.2378	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECGI10_OESOPHAGUS	1	1	0.4756	FALSE	369	2501	205	193	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	AC104389.28--HBE1	3	107	AC104389.28	3440	chr11:5367003:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	35	1	0.76	0.99	0.0274	0.9788	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	ECGI10_OESOPHAGUS	0.76	0.99	1.0062	TRUE	0	48	0	65	48	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TC	26	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2378	0.0457	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ECGI10_OESOPHAGUS	1	1	0.2835	FALSE	462	80	0	856	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	RANBP3--RFX2	26	0	RANBP3	1082	chr19:5978072:-	RFX2	48959	chr19:6016282:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2378	0	LOCAL_REARRANGEMENT:-:[15022],RANBP3->RAN_binding_protein_3,chr19:5916150-5978153:-,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	ECGI10_OESOPHAGUS	1	1	0.2378	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	PROCA1--TMEM33	23	9	PROCA1	6786	chr17:27031101:-	TMEM33	17884	chr4:41956087:+	INCL_NON_REF_SPLICE	YES	3	69	0.91	0.32	0.2104	0.0823	PROCA1->chr17:27030215-27038872:-,protein_interacting_with_cyclin_A1,TMEM33->chr4:41937137-41962589:+,transmembrane_protein_33	ECGI10_OESOPHAGUS	0.32	0.91	0.2927	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TN	16	36	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1464	0.3293	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECGI10_OESOPHAGUS	1	1	0.4757	FALSE	369	2501	205	193	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	C15orf57--CBX3	21	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	27	10	0.56	0.77	0.1921	0.1189	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	ECGI10_OESOPHAGUS	0.56	0.77	0.311	TRUE	267	562	48	632	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	NFXL1--GABRB1	23	2	NFXL1	1668	chr4:47915986:-	GABRB1	32082	chr4:47163266:+	ONLY_REF_SPLICE	YES	5	0	0.83	1	0.2104	0.0183	NFXL1->chr4:47849257-47916653:-,nuclear_transcription_factor,_X-box_binding_like_1,GABRB1->chr4:46995740-47428461:+,gamma-aminobutyric_acid_type_A_receptor_beta1_subunit	ECGI10_OESOPHAGUS	0.83	1	0.2287	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND1--MT-TL1	20	13	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.183	0.1189	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	ECGI10_OESOPHAGUS	0.97	1	0.3019	FALSE	210	95	5	49	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TN	10	53	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0915	0.4848	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECGI10_OESOPHAGUS	1	1	0.5763	FALSE	369	2501	205	193	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	SPG11--MRPL52	23	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2104	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	ECGI10_OESOPHAGUS	1	1	0.2104	TRUE	38	11	0	19	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	RANBP3--RFX2	21	1	RANBP3	1082	chr19:5978072:-	RFX2	46774	chr19:6026248:-	ONLY_REF_SPLICE	YES	2	5	0.92	0.81	0.1921	0.0091	LOCAL_REARRANGEMENT:-:[15022],RANBP3->RAN_binding_protein_3,chr19:5916150-5978153:-,RFX2->Oncogene{Bushman},chr19:5993175-6199583:-,regulatory_factor_X2	ECGI10_OESOPHAGUS	0.81	0.92	0.2012	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	C11orf49--AC008163.4	17	12	C11orf49	3405	chr11:47008861:+	AC008163.4	27025	chr7:81189581:-	ONLY_REF_SPLICE	YES	52	0	0.36	1	0.1555	0.1098	C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49,AC008163.4->chr7:81157719-81191099:-	ECGI10_OESOPHAGUS	0.36	1	0.2653	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TN	19	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1738	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECGI10_OESOPHAGUS	1	1	0.1738	FALSE	369	2501	205	193	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MGST1--RP11-424M22.3	17	6	MGST1	16905	chr12:16536538:+	RP11-424M22.3	25672	chr12:16726445:+	ONLY_REF_SPLICE	YES	6	0	0.79	1	0.1555	0.0549	NEIGHBORS_OVERLAP:+:+:[6529],MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,RP11-424M22.3->chr12:16720345-16726874:+	ECGI10_OESOPHAGUS	0.79	1	0.2104	FALSE	0	1	0	6	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	18	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13630	19	0	0.51	0.1647	0.0183	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	0.51	0.183	FALSE	230	198	14	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	RP11-680G10.1--GSE1	17	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	27	1	0.46	0.1555	0.0549	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ECGI10_OESOPHAGUS	0.46	1	0.2104	TRUE	465	1949	224	605	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TN	11	28	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1006	0.2561	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECGI10_OESOPHAGUS	1	1	0.3567	FALSE	369	2501	205	193	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	SLC7A5--MT-ND4L	16	8	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	3094	0	0.01	1	0.1464	0.0732	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ECGI10_OESOPHAGUS	0.01	1	0.2196	FALSE	0	0	0	23	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TN	17	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1555	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECGI10_OESOPHAGUS	1	1	0.1555	FALSE	369	2501	205	193	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	FAM222B--PHF12	13	14	FAM222B	5825	chr17:27117396:-	PHF12	26936	chr17:27248826:-	ONLY_REF_SPLICE	YES	22	38	0.55	0.42	0.1189	0.1281	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	ECGI10_OESOPHAGUS	0.42	0.55	0.247	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	16	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	13873	17	0	0.51	0.1464	0.0183	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	0.51	0.1647	FALSE	230	193	14	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	SNRPD1--AC016629.3	12	16	SNRPD1	1177	chr18:19192404:+	AC016629.3	8790	chr19:59110720:-	INCL_NON_REF_SPLICE	YES	239	0	0.1	1	0.1098	0.1464	SNRPD1->chr18:19192228-19210417:+,small_nuclear_ribonucleoprotein_D1_polypeptide,AC016629.3->chr19:59105263-59110722:-	ECGI10_OESOPHAGUS	0.1	1	0.2562	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND6--MT-TE	15	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.77	1	0.1372	0.0183	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECGI10_OESOPHAGUS	0.77	1	0.1555	FALSE	499	1288	110	792	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TN	15	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1372	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECGI10_OESOPHAGUS	1	1	0.1372	FALSE	369	2501	205	193	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	CD44--PAMR1	7	31	CD44	1501	chr11:35160917:+	PAMR1	32049	chr11:35550527:-	ONLY_REF_SPLICE	YES	1259	0	0.03	1	0.064	0.2836	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PAMR1->chr11:35453370-35551848:-,peptidase_domain_containing_associated_with_muscle_regeneration_1	ECGI10_OESOPHAGUS	0.03	1	0.3476	TRUE	0	0	0	1	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TN	6	33	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0.3019	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECGI10_OESOPHAGUS	1	1	0.3568	FALSE	369	2501	205	193	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TC	14	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1281	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ECGI10_OESOPHAGUS	1	1	0.1281	FALSE	462	80	0	856	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-CO2	12	7	MT-ND4	1494	chrM:11253:+	MT-CO2	5509	chrM:7716:+	INCL_NON_REF_SPLICE	YES	17412	4953	0	0	0.1098	0.064	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ECGI10_OESOPHAGUS	0	0	0.1738	FALSE	5	1	0	19	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	13	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15400	19	0	0.44	0.1189	0.0183	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	0.44	0.1372	FALSE	231	205	14	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	11	9	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18847	55	0	0.27	0.1006	0.0823	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	0.27	0.1829	FALSE	231	217	16	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	NALCN--LINC00393	12	3	NALCN	8525	chr13:101997652:-	LINC00393	54104	chr13:73987773:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1098	0.0274	NALCN->chr13:101706130-102068843:-,sodium_leak_channel,_non-selective,LINC00393->chr13:73987610-74222390:-,long_intergenic_non-protein_coding_RNA_393	ECGI10_OESOPHAGUS	0.88	1	0.1372	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	11	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	1	0.82	0.95	0.1006	0.064	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ECGI10_OESOPHAGUS	0.82	0.95	0.1646	FALSE	515	4851	409	746	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND1--MT-TL1	7	21	MT-ND1	1341	chrM:3647:+	MT-TL1	5012	chrM:3285:+	INCL_NON_REF_SPLICE	YES	22	0	0.56	1	0.064	0.1921	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	ECGI10_OESOPHAGUS	0.56	1	0.2561	FALSE	210	95	5	49	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	12	1	MT-ND4	1152	chrM:10911:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	11364	10	0	0.57	0.1098	0.0091	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	0.57	0.1189	FALSE	230	193	14	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	RP11-476K15.1--CTD-2015H3.2	12	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.1098	0.0091	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	ECGI10_OESOPHAGUS	0.93	1	0.1189	FALSE	0	46	0	73	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	NRIP1--AF127936.7	12	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1098	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ECGI10_OESOPHAGUS	1	1	0.1098	FALSE	292	1546	117	613	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1006	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ECGI10_OESOPHAGUS	1	1	0.1006	TRUE	0	0	0	434	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	RP11-123O10.4--GRIP1	10	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0915	0.0366	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ECGI10_OESOPHAGUS	1	1	0.1281	FALSE	416	2512	207	587	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	FAM222B--PHF12	10	3	FAM222B	2441	chr17:27169700:-	PHF12	26936	chr17:27248826:-	ONLY_REF_SPLICE	YES	4	38	0.76	0.25	0.0915	0.0274	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	ECGI10_OESOPHAGUS	0.25	0.76	0.1189	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	10	1	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	11325	0	0	1	0.0915	0.0091	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	1	0.1006	FALSE	230	193	14	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-CO2	10	1	MT-ND4	1209	chrM:10968:+	MT-CO2	5522	chrM:7729:+	INCL_NON_REF_SPLICE	YES	13873	6855	0	0	0.0915	0.0091	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ECGI10_OESOPHAGUS	0	0	0.1006	FALSE	5	1	0	19	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND6--MT-TE	10	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0915	0.0091	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECGI10_OESOPHAGUS	1	1	0.1006	FALSE	499	1288	110	792	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	8	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.81	1	0.0732	0.0823	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ECGI10_OESOPHAGUS	0.81	1	0.1555	FALSE	407	2205	196	549	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	5	20	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17076	0	0	1	0.0457	0.183	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	1	0.2287	FALSE	231	217	16	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	NALCN--LINC00393	9	4	NALCN	8560	chr13:101997617:-	LINC00393	54104	chr13:73987773:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0823	0.0366	NALCN->chr13:101706130-102068843:-,sodium_leak_channel,_non-selective,LINC00393->chr13:73987610-74222390:-,long_intergenic_non-protein_coding_RNA_393	ECGI10_OESOPHAGUS	1	1	0.1189	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	CD44--PAMR1	2	31	CD44	1501	chr11:35160917:+	PAMR1	34596	chr11:35535025:-	ONLY_REF_SPLICE	YES	1259	0	0.03	1	0.0183	0.2836	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PAMR1->chr11:35453370-35551848:-,peptidase_domain_containing_associated_with_muscle_regeneration_1	ECGI10_OESOPHAGUS	0.03	1	0.3019	TRUE	0	0	0	1	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	NFE2L1--LCN2	9	3	NFE2L1	8899	chr17:46135734:+	LCN2	17903	chr9:130914238:+	INCL_NON_REF_SPLICE	YES	1606	7261	0.01	0	0.0823	0.0274	NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,LCN2->chr9:130911350-130915734:+,lipocalin_2	ECGI10_OESOPHAGUS	0	0.01	0.1097	TRUE	0	0	0	1	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	RP11-680G10.1--GSE1	8	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	18	1	0.45	0.0732	0.064	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ECGI10_OESOPHAGUS	0.45	1	0.1372	TRUE	458	1351	185	561	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	VEGFA--LCN2	9	2	VEGFA	16320	chr6:43753310:+	LCN2	20638	chr9:130911753:+	INCL_NON_REF_SPLICE	YES	851	2	0.01	0.85	0.0823	0.0183	VEGFA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:43737921-43754224:+,vascular_endothelial_growth_factor_A,LCN2->chr9:130911350-130915734:+,lipocalin_2	ECGI10_OESOPHAGUS	0.01	0.85	0.1006	TRUE	0	0	0	2	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	7	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.94	0.94	0.064	0.0823	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ECGI10_OESOPHAGUS	0.94	0.94	0.1463	FALSE	467	2173	244	435	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	SLC1A5--MT-ND4L	9	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	528	0	0.02	1	0.0823	0.0091	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ECGI10_OESOPHAGUS	0.02	1	0.0914	FALSE	0	0	0	189	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	CELF1--AMBRA1	8	4	CELF1	16003	chr11:47504247:-	AMBRA1	50579	chr11:46465148:-	ONLY_REF_SPLICE	YES	91	52	0.12	0.19	0.0732	0.0366	CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-	ECGI10_OESOPHAGUS	0.12	0.19	0.1098	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TN	9	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0823	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECGI10_OESOPHAGUS	1	1	0.0823	FALSE	369	2501	205	193	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	4	19	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	16765	0	0	1	0.0366	0.1738	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	1	0.2104	FALSE	231	217	16	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	SLC39A11--LINC00511	8	3	SLC39A11	8636	chr17:71027695:-	LINC00511	39209	chr17:70427365:-	ONLY_REF_SPLICE	YES	30	22	0.27	0.33	0.0732	0.0274	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	ECGI10_OESOPHAGUS	0.27	0.33	0.1006	FALSE	0	1	0	2	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	3	21	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	2	0	0.92	1	0.0274	0.1921	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0.92	1	0.2195	FALSE	209	205	15	279	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	4	17	MT-ND4	2283	chrM:12042:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	88	55	0.19	0.28	0.0366	0.1555	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0.19	0.28	0.1921	FALSE	213	207	15	279	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	3	21	MT-ND4	2335	chrM:12094:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0.1921	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	1	1	0.2195	FALSE	209	205	15	279	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	3	21	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	16759	0	0	1	0.0274	0.1921	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	1	0.2195	FALSE	231	217	16	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	RFX3--PDHX	8	1	RFX3	1258	chr9:3525747:-	PDHX	38794	chr11:34978931:+	ONLY_REF_SPLICE	YES	6	117	0.6	0.07	0.0732	0.0091	RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	ECGI10_OESOPHAGUS	0.07	0.6	0.0823	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	4	16	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5722	55	0	0.27	0.0366	0.1464	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	0.27	0.183	FALSE	218	210	16	281	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	6	8	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	18215	0	0	1	0.0549	0.0732	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	1	0.1281	FALSE	231	217	16	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	4	16	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	15834	162	0	0.11	0.0366	0.1464	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	0.11	0.183	FALSE	231	217	16	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND6--MT-TE	7	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0.0366	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECGI10_OESOPHAGUS	1	1	0.1006	FALSE	499	1288	110	792	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-CO2	6	6	MT-ND4	1467	chrM:11226:+	MT-CO2	5412	chrM:7619:+	INCL_NON_REF_SPLICE	YES	18214	0	0	1	0.0549	0.0549	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ECGI10_OESOPHAGUS	0	1	0.1098	FALSE	5	1	0	19	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TC	6	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0.0549	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ECGI10_OESOPHAGUS	1	1	0.1098	FALSE	462	80	0	856	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	REV3L--FYN	7	2	REV3L	1966	chr6:111803953:-	FYN	51684	chr6:112167832:-	ONLY_REF_SPLICE	YES	6	6	0.6	0.6	0.064	0.0183	GTEx_FI:{Skin=[count:2=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Cells_-_Transformed_fibroblasts=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-	ECGI10_OESOPHAGUS	0.6	0.6	0.0823	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	4	13	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	16844	746	0	0.02	0.0366	0.1189	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	0.02	0.1555	FALSE	231	217	16	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	4	13	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15999	55	0	0.24	0.0366	0.1189	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	0.24	0.1555	FALSE	231	217	16	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	6	5	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	16808	4	0	0.73	0.0549	0.0457	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	0.73	0.1006	FALSE	231	205	14	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	4	13	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	16055	0	0	1	0.0366	0.1189	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	1	0.1555	FALSE	231	217	16	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	3	16	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15834	55	0	0.26	0.0274	0.1464	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	0.26	0.1738	FALSE	231	217	16	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND6--MT-TE	6	4	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.67	1	0.0549	0.0366	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECGI10_OESOPHAGUS	0.67	1	0.0915	FALSE	499	1288	110	792	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	NHS--IL1RAPL1	7	0	NHS	5498	chrX:17710588:+	IL1RAPL1	23099	chrX:28807437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.064	0	NHS->NHS_actin_remodeling_regulator,chrX:17393543-17754114:+,IL1RAPL1->chrX:28605516-29974840:+,interleukin_1_receptor_accessory_protein_like_1	ECGI10_OESOPHAGUS	1	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	SLC7A5--ATP5G2	7	0	SLC7A5	8052	chr16:87871490:-	ATP5G2	21321	chr12:54066421:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.064	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	ECGI10_OESOPHAGUS	1	1	0.064	TRUE	0	0	0	7	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	SNRPD1--AC016629.3	6	4	SNRPD1	1177	chr18:19192404:+	AC016629.3	10044	chr19:59109183:-	ONLY_REF_SPLICE	YES	239	5	0.04	0.67	0.0549	0.0366	SNRPD1->chr18:19192228-19210417:+,small_nuclear_ribonucleoprotein_D1_polypeptide,AC016629.3->chr19:59105263-59110722:-	ECGI10_OESOPHAGUS	0.04	0.67	0.0915	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	3	15	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	16353	0	0	1	0.0274	0.1372	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	1	0.1646	FALSE	231	217	16	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	4	9	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17439	0	0	1	0.0366	0.0823	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	1	0.1189	FALSE	231	217	16	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	5	5	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	18000	4	0	0.71	0.0457	0.0457	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	0.71	0.0914	FALSE	231	216	16	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	4	9	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	17526	0	0	1	0.0366	0.0823	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	1	0.1189	FALSE	231	217	16	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	APTX--ZDHHC21	6	0	APTX	4991	chr9:33001565:-	ZDHHC21	26545	chr9:14662324:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0549	0	APTX->aprataxin,chr9:32972604-33025166:-,ZDHHC21->chr9:14611069-14693469:-,zinc_finger_DHHC-type_containing_21	ECGI10_OESOPHAGUS	1	1	0.0549	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TC	5	4	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0.0366	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ECGI10_OESOPHAGUS	1	1	0.0823	FALSE	462	80	0	856	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	5	3	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	13982	0	0	1	0.0457	0.0274	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	1	0.0731	FALSE	231	204	14	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	C11orf49--AC008163.4	5	2	C11orf49	1163	chr11:46958402:+	AC008163.4	27025	chr7:81189581:-	ONLY_REF_SPLICE	YES	11	0	0.39	1	0.0457	0.0183	C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49,AC008163.4->chr7:81157719-81191099:-	ECGI10_OESOPHAGUS	0.39	1	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	KRT5--MT-CO3	5	2	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	2244	11793	0	0	0.0457	0.0183	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	ECGI10_OESOPHAGUS	0	0	0.064	FALSE	0	0	0	18	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MIR205HG--MT-CO3	5	2	MIR205HG	4440	chr1:209605604:+	MT-CO3	8225	chrM:9412:+	INCL_NON_REF_SPLICE	YES	2890	9946	0	0	0.0457	0.0183	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	ECGI10_OESOPHAGUS	0	0	0.064	FALSE	0	0	0	1	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	5	2	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	17586	1394	0	0	0.0457	0.0183	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	0	0.064	FALSE	231	205	14	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-CO2	5	1	MT-ND4	1192	chrM:10951:+	MT-CO2	5527	chrM:7734:+	INCL_NON_REF_SPLICE	YES	12770	7381	0	0	0.0457	0.0091	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ECGI10_OESOPHAGUS	0	0	0.0548	FALSE	5	1	0	19	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	AC104389.28--HBE1	5	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0457	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	ECGI10_OESOPHAGUS	1	1	0.0457	TRUE	0	16	0	53	13	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MAEA--CTBP1	5	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0457	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	ECGI10_OESOPHAGUS	1	1	0.0457	TRUE	3	14	2	43	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MIR205HG--FTH1	5	0	MIR205HG	4437	chr1:209605601:+	FTH1	8214	chr11:61734938:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	ECGI10_OESOPHAGUS	1	1	0.0457	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MIR205HG--MT-CO3	5	0	MIR205HG	2657	chr1:209603821:+	MT-CO3	8210	chrM:9397:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	ECGI10_OESOPHAGUS	1	1	0.0457	FALSE	0	0	0	1	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TN	5	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECGI10_OESOPHAGUS	1	1	0.0457	FALSE	369	2501	205	193	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TN	5	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0457	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECGI10_OESOPHAGUS	1	1	0.0457	FALSE	369	2501	205	193	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	2	12	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0183	0.1098	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ECGI10_OESOPHAGUS	0.93	1	0.1281	FALSE	192	492	57	212	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	GAB2--ALG8	4	3	GAB2	1703	chr11:78128692:-	ALG8	38874	chr11:77815499:-	ONLY_REF_SPLICE	YES	4	59	0.64	0.11	0.0366	0.0274	NEIGHBORS[75637],GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,ALG8->ALG8,_alpha-1,3-glucosyltransferase,chr11:77811982-77850706:-	ECGI10_OESOPHAGUS	0.11	0.64	0.064	FALSE	0	1	0	1	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-CO2	3	7	MT-ND4	1544	chrM:11303:+	MT-CO2	5580	chrM:7787:+	INCL_NON_REF_SPLICE	YES	19341	12744	0	0	0.0274	0.064	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ECGI10_OESOPHAGUS	0	0	0.0914	FALSE	5	1	0	19	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND6--MT-TE	3	7	MT-ND6	1168	chrM:14506:-	MT-TE	4530	chrM:14738:-	INCL_NON_REF_SPLICE	YES	5	0	0.67	1	0.0274	0.064	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECGI10_OESOPHAGUS	0.67	1	0.0914	FALSE	499	1288	110	792	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	FAM222B--PHF12	2	10	FAM222B	4726	chr17:27139227:-	PHF12	26936	chr17:27248826:-	ONLY_REF_SPLICE	YES	18	38	0.4	0.24	0.0183	0.0915	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	ECGI10_OESOPHAGUS	0.24	0.4	0.1098	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	IL1RAPL1--REPS2	4	2	IL1RAPL1	2755	chrX:28807542:+	REPS2	19579	chrX:17024344:+	ONLY_REF_SPLICE	YES	0	6	1	0.5	0.0366	0.0183	IL1RAPL1->chrX:28605516-29974840:+,interleukin_1_receptor_accessory_protein_like_1,REPS2->Oncogene{Bushman},RALBP1_associated_Eps_domain_containing_2,chrX:16964814-17171395:+	ECGI10_OESOPHAGUS	0.5	1	0.0549	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	PKN2--RP5-908D6.1	4	2	PKN2	6391	chr1:89237562:+	RP5-908D6.1	27892	chr1:89797606:+	INCL_NON_REF_SPLICE	YES	26	0	0.19	1	0.0366	0.0183	PKN2->chr1:89149905-89301938:+,protein_kinase_N2,RP5-908D6.1->chr1:89790205-89800563:+	ECGI10_OESOPHAGUS	0.19	1	0.0549	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	2	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.0183	0.0915	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ECGI10_OESOPHAGUS	0.75	1	0.1098	FALSE	275	511	55	178	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	FAM222B--PHF12	3	5	FAM222B	4726	chr17:27139227:-	PHF12	28057	chr17:27246293:-	ONLY_REF_SPLICE	YES	18	51	0.31	0.14	0.0274	0.0457	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	ECGI10_OESOPHAGUS	0.14	0.31	0.0731	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	3	5	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18215	55	0	0.13	0.0274	0.0457	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	0.13	0.0731	FALSE	231	217	16	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-CO2	4	1	MT-ND4	1257	chrM:11016:+	MT-CO2	5694	chrM:7901:+	INCL_NON_REF_SPLICE	YES	14453	17170	0	0	0.0366	0.0091	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ECGI10_OESOPHAGUS	0	0	0.0457	FALSE	5	1	0	19	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-TA--MT-TC	3	5	MT-TA	1063	chrM:5593:-	MT-TC	4102	chrM:5794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0.0457	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ECGI10_OESOPHAGUS	1	1	0.0731	FALSE	462	80	0	856	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	23	816	0.18	0.01	0.0366	0.0091	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ECGI10_OESOPHAGUS	0.01	0.18	0.0457	FALSE	0	0	0	434	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	SLC1A5--MT-ND4L	4	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	545	0	0.01	1	0.0366	0.0091	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ECGI10_OESOPHAGUS	0.01	1	0.0457	FALSE	0	0	0	189	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	ADK--KAT6B	4	0	ADK	13900	chr10:76360251:+	KAT6B	25609	chr10:76719728:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	GTEx&tcga_normals:1/3694=0.03%,ADK->adenosine_kinase,chr10:75910960-76469061:+,KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B	ECGI10_OESOPHAGUS	1	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	DNAJC25--UGCG	4	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	ECGI10_OESOPHAGUS	1	1	0.0366	TRUE	50	73	10	50	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	FAM222B--PHF12	3	4	FAM222B	3499	chr17:27161311:-	PHF12	26936	chr17:27248826:-	ONLY_REF_SPLICE	YES	10	38	0.41	0.16	0.0274	0.0366	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	ECGI10_OESOPHAGUS	0.16	0.41	0.064	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MIR205HG--FTH1	4	0	MIR205HG	4453	chr1:209605617:+	FTH1	8227	chr11:61734925:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0366	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	ECGI10_OESOPHAGUS	1	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND6--MT-TE	3	4	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	5	0	0.58	1	0.0274	0.0366	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECGI10_OESOPHAGUS	0.58	1	0.064	FALSE	499	1288	110	792	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0366	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ECGI10_OESOPHAGUS	1	1	0.0366	TRUE	0	0	0	434	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	SLC39A11--LINC00511	4	0	SLC39A11	8636	chr17:71027695:-	LINC00511	40306	chr17:70424439:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	ECGI10_OESOPHAGUS	1	1	0.0366	FALSE	0	1	0	3	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	VEGFA--LCN2	4	0	VEGFA	16298	chr6:43753288:+	LCN2	20617	chr9:130911732:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0366	0	VEGFA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:43737921-43754224:+,vascular_endothelial_growth_factor_A,LCN2->chr9:130911350-130915734:+,lipocalin_2	ECGI10_OESOPHAGUS	1	1	0.0366	TRUE	0	0	0	2	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	FAM222B--PHF12	1	11	FAM222B	4777	chr17:27139176:-	PHF12	26936	chr17:27248826:-	ONLY_REF_SPLICE	NO	19	38	0.39	0.24	0.0091	0.1006	LOCAL_REARRANGEMENT:-:[50018],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-	ECGI10_OESOPHAGUS	0.24	0.39	0.1097	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	NFE2L1--LCN2	3	3	NFE2L1	9342	chr17:46136177:+	LCN2	15406	chr9:130911741:+	INCL_NON_REF_SPLICE	YES	1185	2	0.01	0.75	0.0274	0.0274	NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,LCN2->chr9:130911350-130915734:+,lipocalin_2	ECGI10_OESOPHAGUS	0.01	0.75	0.0548	FALSE	0	0	0	1	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MIR205HG--MT-CO3	3	2	MIR205HG	4446	chr1:209605610:+	MT-CO3	8225	chrM:9412:+	INCL_NON_REF_SPLICE	YES	2991	9946	0	0	0.0274	0.0183	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	ECGI10_OESOPHAGUS	0	0	0.0457	FALSE	0	0	0	1	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	SGTB--GRAMD1A	3	2	SGTB	7620	chr5:64981195:-	GRAMD1A	19761	chr19:35486898:+	ONLY_REF_SPLICE	YES	16	0	0.24	1	0.0274	0.0183	SGTB->chr5:64961755-65018862:-,small_glutamine_rich_tetratricopeptide_repeat_containing_beta,GRAMD1A->GRAM_domain_containing_1A,chr19:35485688-35517375:+	ECGI10_OESOPHAGUS	0.24	1	0.0457	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	C11orf49--AC008163.4	3	1	C11orf49	3405	chr11:47008861:+	AC008163.4	28171	chr7:81157892:-	ONLY_REF_SPLICE	YES	52	0	0.07	1	0.0274	0.0091	C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49,AC008163.4->chr7:81157719-81191099:-	ECGI10_OESOPHAGUS	0.07	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-ATP8	3	1	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	9024	0	0	1	0.0274	0.0091	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	0	1	0.0365	FALSE	230	193	14	283	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-CO2	3	1	MT-ND4	1222	chrM:10981:+	MT-CO2	5514	chrM:7721:+	INCL_NON_REF_SPLICE	YES	13807	6057	0	0	0.0274	0.0091	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ECGI10_OESOPHAGUS	0	0	0.0365	FALSE	5	1	0	19	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND4--MT-CO2	3	1	MT-ND4	1232	chrM:10991:+	MT-CO2	5678	chrM:7885:+	INCL_NON_REF_SPLICE	YES	13858	16954	0	0	0.0274	0.0091	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ECGI10_OESOPHAGUS	0	0	0.0365	FALSE	5	1	0	19	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	SCARB1--UBC	3	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	56	50	0.07	0.07	0.0274	0.0091	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	ECGI10_OESOPHAGUS	0.07	0.07	0.0365	TRUE	55	66	6	101	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	AC104389.28--HBE1	2	4	AC104389.28	3440	chr11:5367003:-	HBE1	14230	chr11:5290906:-	ONLY_REF_SPLICE	YES	35	123	0.15	0.05	0.0183	0.0366	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	ECGI10_OESOPHAGUS	0.05	0.15	0.0549	TRUE	0	48	0	65	48	FALSE	ACH-000305
ECGI10_OESOPHAGUS	AC104389.28--HBE1	3	0	AC104389.28	1093	chr11:5526790:-	HBE1	13750	chr11:5291386:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	ECGI10_OESOPHAGUS	1	1	0.0274	TRUE	0	16	0	53	13	FALSE	ACH-000305
ECGI10_OESOPHAGUS	F3--LCN2	3	0	F3	1181	chr1:95007176:-	LCN2	11477	chr9:130911762:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,LCN2->chr9:130911350-130915734:+,lipocalin_2	ECGI10_OESOPHAGUS	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND1--MT-TL1	3	0	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	ECGI10_OESOPHAGUS	1	1	0.0274	FALSE	210	95	5	49	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECGI10_OESOPHAGUS	1	1	0.0274	FALSE	499	1288	110	792	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECGI10_OESOPHAGUS	1	1	0.0274	FALSE	499	1288	110	792	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECGI10_OESOPHAGUS	1	1	0.0274	FALSE	499	1288	110	792	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	SAMD5--SASH1	3	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	ECGI10_OESOPHAGUS	1	1	0.0274	TRUE	53	396	64	110	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	SLC7A5--MT-ATP8	3	0	SLC7A5	8027	chr16:87871515:-	MT-ATP8	17607	chrM:8392:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECGI10_OESOPHAGUS	1	1	0.0274	FALSE	0	0	0	2	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	VEGFA--LCN2	3	0	VEGFA	1568	chr6:43738488:+	LCN2	20626	chr9:130911741:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	VEGFA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:43737921-43754224:+,vascular_endothelial_growth_factor_A,LCN2->chr9:130911350-130915734:+,lipocalin_2	ECGI10_OESOPHAGUS	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	SLC39A11--LINC00511	2	3	SLC39A11	9695	chr17:70989030:-	LINC00511	39209	chr17:70427365:-	ONLY_REF_SPLICE	YES	31	22	0.14	0.19	0.0183	0.0274	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	ECGI10_OESOPHAGUS	0.14	0.19	0.0457	FALSE	0	0	0	3	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	REV3L--FYN	2	2	REV3L	1966	chr6:111803953:-	FYN	60258	chr6:112101838:-	ONLY_REF_SPLICE	YES	6	7	0.4	0.36	0.0183	0.0183	GTEx_FI:{Skin=[count:2=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Cells_-_Transformed_fibroblasts=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-	ECGI10_OESOPHAGUS	0.36	0.4	0.0366	TRUE	1	2	0	1	2	TRUE	ACH-000305
ECGI10_OESOPHAGUS	CALB1--RP11-37B2.1	2	1	CALB1	6004	chr8:91090601:-	RP11-37B2.1	20739	chr8:90737869:-	ONLY_REF_SPLICE	YES	388	25	0.01	0.11	0.0183	0.0091	CALB1->calbindin_1,chr8:91070836-91107703:-,RP11-37B2.1->chr8:90621638-90769955:-	ECGI10_OESOPHAGUS	0.01	0.11	0.0274	FALSE	0	0	0	1	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	NOC4L--ULK1	2	1	NOC4L	5448	chr12:132633440:+	ULK1	15327	chr12:132393189:+	ONLY_REF_SPLICE	YES	34	102	0.08	0.03	0.0183	0.0091	NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,ULK1->chr12:132379196-132407712:+,unc-51_like_autophagy_activating_kinase_1	ECGI10_OESOPHAGUS	0.03	0.08	0.0274	TRUE	1	0	0	1	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	RFX3--PDHX	2	1	RFX3	3828	chr9:3488776:-	PDHX	38794	chr11:34978931:+	ONLY_REF_SPLICE	YES	7	117	0.3	0.03	0.0183	0.0091	RFX3->chr9:3218297-3526004:-,regulatory_factor_X3,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	ECGI10_OESOPHAGUS	0.03	0.3	0.0274	TRUE	0	0	0	1	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0.0091	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	ECGI10_OESOPHAGUS	1	1	0.0274	TRUE	0	10	0	4	10	TRUE	ACH-000305
ECGI10_OESOPHAGUS	YWHAE--CRK	2	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1749	134	0	0.02	0.0183	0.0091	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	ECGI10_OESOPHAGUS	0	0.02	0.0274	FALSE	6	50	7	115	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	ZFYVE21--KLC1	2	1	ZFYVE21	1250	chr14:104182316:+	KLC1	34861	chr14:104166992:+	ONLY_REF_SPLICE	YES	103	92	0.03	0.03	0.0183	0.0091	GTEx_FI:{Esophagus=[count:4=pct:1.0],Brain=[count:3=pct:0.5],Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Colon=[count:1=pct:0.5],Pituitary=[count:1=pct:1.9],Breast=[count:1=pct:0.9]},GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_REARRANGEMENT:+:[14179],ZFYVE21->chr14:104182067-104200005:+,zinc_finger_FYVE-type_containing_21,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	ECGI10_OESOPHAGUS	0.03	0.03	0.0274	TRUE	10	10	1	10	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	CPSF6--TP53BP1	2	0	CPSF6	11046	chr12:69656342:+	TP53BP1	30672	chr15:43762264:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	GTEx_v2:{count=2;pct=0.02%;dist=Pituitary=1,Cells_-_EBV-transformed_lymphocytes=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	ECGI10_OESOPHAGUS	1	1	0.0183	TRUE	0	0	0	3	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MIR205HG--FAIM	2	0	MIR205HG	1589	chr1:209602753:+	FAIM	12252	chr3:138340249:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,FAIM->Fas_apoptotic_inhibitory_molecule,Oncogene{Bushman},chr3:138327448-138352218:+	ECGI10_OESOPHAGUS	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MYO1E--TP53BP1	2	0	MYO1E	18913	chr15:59497599:-	TP53BP1	55780	chr15:43730614:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	MYO1E->chr15:59427113-59665099:-,myosin_IE,TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1	ECGI10_OESOPHAGUS	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ECGI10_OESOPHAGUS	1	1	0.0183	FALSE	25	145	6	90	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	NRIP1--AF127936.7	2	0	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ECGI10_OESOPHAGUS	1	1	0.0183	FALSE	164	806	69	479	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	PPP4R2--PCID2	2	0	PPP4R2	2374	chr3:73047309:+	PCID2	19668	chr13:113854830:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	PPP4R2->chr3:73045936-73118350:+,protein_phosphatase_4_regulatory_subunit_2,PCID2->PCI_domain_containing_2,chr13:113831891-113863029:-	ECGI10_OESOPHAGUS	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	PTBP1--TMEM259	2	0	PTBP1	1431	chr19:797505:+	TMEM259	17849	chr19:1014472:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	GTEx&tcga_normals:1/3694=0.03%,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1,TMEM259->chr19:1009647-1021117:-,transmembrane_protein_259	ECGI10_OESOPHAGUS	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	RPS3--UBB	2	0	RPS3	2292	chr11:75111821:+	UBB	14087	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,UBB->chr17:16284112-16286059:+,ubiquitin_B	ECGI10_OESOPHAGUS	1	1	0.0183	TRUE	0	0	0	6	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	STUB1--RNASEH2C	2	0	STUB1	3058	chr16:732281:+	RNASEH2C	7178	chr11:65487888:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	STUB1->STIP1_homology_and_U-box_containing_protein_1,chr16:730224-732870:+,RNASEH2C->chr11:65482367-65488418:-,ribonuclease_H2_subunit_C	ECGI10_OESOPHAGUS	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	CD44--PAMR1	1	3	CD44	1501	chr11:35160917:+	PAMR1	38009	chr11:35496292:-	ONLY_REF_SPLICE	NO	1259	17	0	0.19	0.0091	0.0274	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PAMR1->chr11:35453370-35551848:-,peptidase_domain_containing_associated_with_muscle_regeneration_1	ECGI10_OESOPHAGUS	0	0.19	0.0365	FALSE	0	0	0	2	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	FAM83D--PPP1R16B	1	2	FAM83D	3907	chr20:37576643:+	PPP1R16B	10518	chr20:37464468:+	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0091	0.0183	LOCAL_REARRANGEMENT:+:[3288],FAM83D->chr20:37554955-37581703:+,family_with_sequence_similarity_83_member_D,PPP1R16B->Oncogene{Bushman},chr20:37434348-37551667:+,protein_phosphatase_1_regulatory_subunit_16B	ECGI10_OESOPHAGUS	0.25	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	IL1RAPL1--REPS2	1	2	IL1RAPL1	2755	chrX:28807542:+	REPS2	20703	chrX:17040246:+	ONLY_REF_SPLICE	NO	0	6	1	0.33	0.0091	0.0183	IL1RAPL1->chrX:28605516-29974840:+,interleukin_1_receptor_accessory_protein_like_1,REPS2->Oncogene{Bushman},RALBP1_associated_Eps_domain_containing_2,chrX:16964814-17171395:+	ECGI10_OESOPHAGUS	0.33	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	MGST1--RP11-424M22.3	1	2	MGST1	11416	chr12:16520399:+	RP11-424M22.3	25672	chr12:16726445:+	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0091	0.0183	NEIGHBORS_OVERLAP:+:+:[6529],MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,RP11-424M22.3->chr12:16720345-16726874:+	ECGI10_OESOPHAGUS	0.3	1	0.0274	FALSE	0	2	0	4	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	PKN2--RP5-908D6.1	1	2	PKN2	6391	chr1:89237562:+	RP5-908D6.1	27907	chr1:89797621:+	ONLY_REF_SPLICE	NO	26	0	0.1	1	0.0091	0.0183	PKN2->chr1:89149905-89301938:+,protein_kinase_N2,RP5-908D6.1->chr1:89790205-89800563:+	ECGI10_OESOPHAGUS	0.1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	GAB2--ALG8	1	1	GAB2	1703	chr11:78128692:-	ALG8	39275	chr11:77815098:-	ONLY_REF_SPLICE	YES	4	55	0.33	0.04	0.0091	0.0091	NEIGHBORS[75637],GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,ALG8->ALG8,_alpha-1,3-glucosyltransferase,chr11:77811982-77850706:-	ECGI10_OESOPHAGUS	0.04	0.33	0.0182	FALSE	0	1	0	1	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	LZTS2--MBD3	1	1	LZTS2	1617	chr10:102756991:+	MBD3	17863	chr19:1585213:-	ONLY_REF_SPLICE	YES	36	23	0.05	0.08	0.0091	0.0091	LZTS2->chr10:102756375-102767593:+,leucine_zipper,_putative_tumor_suppressor_2,MBD3->chr19:1576639-1592882:-,methyl-CpG_binding_domain_protein_3	ECGI10_OESOPHAGUS	0.05	0.08	0.0182	TRUE	0	0	0	1	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	NOC4L--ULK1	1	1	NOC4L	2218	chr12:132630210:+	ULK1	15327	chr12:132393189:+	ONLY_REF_SPLICE	YES	47	102	0.04	0.02	0.0091	0.0091	NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,ULK1->chr12:132379196-132407712:+,unc-51_like_autophagy_activating_kinase_1	ECGI10_OESOPHAGUS	0.02	0.04	0.0182	TRUE	0	0	0	1	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	NQO1--KRT6A	1	1	NQO1	2684	chr16:69752273:-	KRT6A	13892	chr12:52885520:-	ONLY_REF_SPLICE	YES	279	2190	0.01	0	0.0091	0.0091	NQO1->NAD(P)H_quinone_dehydrogenase_1,Oncogene{Bushman},chr16:69740899-69760854:-,KRT6A->chr12:52880958-52887041:-,keratin_6A	ECGI10_OESOPHAGUS	0	0.01	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	P4HB--MT-ND4L	1	1	P4HB	7728	chr17:79803747:-	MT-ND4L	13390	chrM:10470:+	ONLY_REF_SPLICE	NO	1210	0	0	1	0.0091	0.0091	P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ECGI10_OESOPHAGUS	0	1	0.0182	FALSE	1	1	0	2	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	RP11-476K15.1--CTD-2015H3.2	1	1	RP11-476K15.1	1041	chr18:1509224:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	NO	6	0	0.25	1	0.0091	0.0091	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	ECGI10_OESOPHAGUS	0.25	1	0.0182	FALSE	0	0	0	5	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	53	1	0.04	0.0091	0.0091	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ECGI10_OESOPHAGUS	0.04	1	0.0182	TRUE	64	13	3	59	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0091	0.0091	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	ECGI10_OESOPHAGUS	1	1	0.0182	TRUE	0	4	1	7	4	TRUE	ACH-000305
ECGI10_OESOPHAGUS	RP11-681L8.1--STPG2	1	1	RP11-681L8.1	2417	chr4:98493799:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0091	0.0091	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	ECGI10_OESOPHAGUS	1	1	0.0182	TRUE	0	2	0	5	2	TRUE	ACH-000305
ECGI10_OESOPHAGUS	SNAPC1--RP11-799P8.1	1	1	SNAPC1	7963	chr14:62249115:+	RP11-799P8.1	15949	chr14:82074045:-	ONLY_REF_SPLICE	YES	51	0	0.04	1	0.0091	0.0091	SNAPC1->chr14:62229075-62263146:+,small_nuclear_RNA_activating_complex_polypeptide_1,RP11-799P8.1->chr14:82071691-82089405:-	ECGI10_OESOPHAGUS	0.04	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000305
ECGI10_OESOPHAGUS	SYNCRIP--PTMA	1	1	SYNCRIP	1996	chr6:86352515:-	PTMA	24815	chr2:232576058:+	ONLY_REF_SPLICE	YES	156	1033	0.01	0	0.0091	0.0091	SYNCRIP->chr6:86318053-86353510:-,synaptotagmin_binding_cytoplasmic_RNA_interacting_protein,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	ECGI10_OESOPHAGUS	0	0.01	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000305
ECGI10_OESOPHAGUS	TPM4--PTMS	1	1	TPM4	3954	chr19:16187507:+	PTMS	23525	chr12:6878769:+	ONLY_REF_SPLICE	NO	598	57	0	0.03	0.0091	0.0091	TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4,PTMS->chr12:6874682-6880116:+,parathymosin	ECGI10_OESOPHAGUS	0	0.03	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000305
MDAMB415_BREAST	SHANK2--OTUB1	130	17	SHANK2	52998	chr11:70331419:-	OTUB1	68065	chr11:63764002:+	ONLY_REF_SPLICE	YES	3	423	0.98	0.26	1.7335	0.2267	SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-,OTUB1->OTU_deubiquitinase,_ubiquitin_aldehyde_binding_1,chr11:63753325-63769283:+	MDAMB415_BREAST	0.26	0.98	1.9602	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	MT-TA--MT-TN	74	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9868	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB415_BREAST	1	1	0.9868	FALSE	369	2501	205	193	0	FALSE	ACH-000876
MDAMB415_BREAST	RAD9A--SHANK2	63	36	RAD9A	3086	chr11:67161261:+	SHANK2	59419	chr11:70333825:-	ONLY_REF_SPLICE	YES	70	10	0.59	0.91	0.8401	0.48	RAD9A->Oncogene{Bushman},RAD9_checkpoint_clamp_component_A,chr11:67159176-67165881:+,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	MDAMB415_BREAST	0.59	0.91	1.3201	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	MT-ND4--MT-ATP8	62	3	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	14591	1572	0	0.04	0.8268	0.04	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB415_BREAST	0	0.04	0.8668	FALSE	231	217	16	283	0	FALSE	ACH-000876
MDAMB415_BREAST	OR51S1--TP53I11	56	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7467	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	MDAMB415_BREAST	1	1	0.7467	TRUE	402	216	10	229	0	FALSE	ACH-000876
MDAMB415_BREAST	TIMM23B--LINC00843	48	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6401	0.1734	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MDAMB415_BREAST	1	1	0.8135	TRUE	508	994	45	981	0	FALSE	ACH-000876
MDAMB415_BREAST	AP3D1--SLC6A8	47	0	AP3D1	26929	chr19:2101455:-	SLC6A8	38438	chrX:152961595:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6267	0	GTEx&tcga_normals:500/3694=13.54%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9]},GTEx_v2:{count=1021;pct=11.80%;dist=Thyroid=52,Muscle_-_Skeletal=40,Lung=39,Esophagus_-_Mucosa=38,Testis=37,Esophagus_-_Muscularis=36,Cells_-_Transformed_fibroblasts=34,Skin_-_Sun_Exposed_(Lower_leg)=33,Nerve_-_Tibial=30,Artery_-_Tibial=29,Pituitary=28,Adipose_-_Visceral_(Omentum)=27,Spleen=27,Colon_-_Transverse=27,Stomach=26,Adrenal_Gland=26,Pancreas=25,Adipose_-_Subcutaneous=25,Breast_-_Mammary_Tissue=24,Cells_-_EBV-transformed_lymphocytes=24,Heart_-_Atrial_Appendage=24,Brain_-_Cerebellar_Hemisphere=21,Brain_-_Cerebellum=20,Colon_-_Sigmoid=20,Prostate=19,Heart_-_Left_Ventricle=19,Artery_-_Coronary=18,Brain_-_Cortex=18,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Small_Intestine_-_Terminal_Ileum=17,Artery_-_Aorta=17,Brain_-_Frontal_Cortex_(BA9)=17,Esophagus_-_Gastroesophageal_Junction=17,Skin_-_Not_Sun_Exposed_(Suprapubic)=17,Liver=16,Brain_-_Hypothalamus=13,Minor_Salivary_Gland=12,Brain_-_Hippocampus=12,Uterus=11,Ovary=10,Brain_-_Anterior_cingulate_cortex_(BA24)=10,Brain_-_Putamen_(basal_ganglia)=9,Brain_-_Caudate_(basal_ganglia)=9,Vagina=8,Whole_Blood=6,Kidney_-_Cortex=5,Brain_-_Substantia_nigra=4,Brain_-_Spinal_cord_(cervical_c-1)=3,Brain_-_Amygdala=3,=1},AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-,SLC6A8->chrX:152953554-152962048:+,solute_carrier_family_6_member_8	MDAMB415_BREAST	1	1	0.6267	TRUE	6	6	0	5	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-TA--MT-TC	37	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4934	0.0667	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB415_BREAST	1	1	0.5601	FALSE	462	80	0	856	0	FALSE	ACH-000876
MDAMB415_BREAST	ZNF331--ANO1	31	26	ZNF331	7495	chr19:54042536:+	ANO1	21169	chr11:69924648:+	INCL_NON_REF_SPLICE	YES	10	0	0.85	1	0.4134	0.3467	ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331,ANO1->anoctamin_1,chr11:69924408-70035634:+	MDAMB415_BREAST	0.85	1	0.7601	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	LRP5--RP11-554A11.9	28	29	LRP5	6121	chr11:68133170:+	RP11-554A11.9	35381	chr11:68926914:+	ONLY_REF_SPLICE	YES	50	6	0.53	0.9	0.3734	0.3867	LRP5->LDL_receptor_related_protein_5,Oncogene{Bushman},chr11:68080077-68216743:+,RP11-554A11.9->chr11:68923378-68927220:+	MDAMB415_BREAST	0.53	0.9	0.7601	TRUE	0	1	0	1	1	TRUE	ACH-000876
MDAMB415_BREAST	MT-ND6--MT-TE	34	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4534	0.0267	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB415_BREAST	1	1	0.4801	FALSE	499	1288	110	792	0	FALSE	ACH-000876
MDAMB415_BREAST	TIMM23--RP11-464F9.1	27	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	174	6	0.14	0.83	0.36	0.0267	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MDAMB415_BREAST	0.14	0.83	0.3867	TRUE	519	3926	326	965	0	FALSE	ACH-000876
MDAMB415_BREAST	ZNF654--HMGB2	23	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3067	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MDAMB415_BREAST	1	1	0.3067	TRUE	0	0	0	518	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND4--MT-ATP8	19	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2534	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB415_BREAST	1	1	0.2534	FALSE	230	193	14	283	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND6--MT-TE	18	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.24	0.0267	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB415_BREAST	1	1	0.2667	FALSE	499	1288	110	792	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-TA--MT-TN	9	33	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.12	0.44	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB415_BREAST	1	1	0.56	FALSE	369	2501	205	193	0	FALSE	ACH-000876
MDAMB415_BREAST	LRIG1--FHIT	17	0	LRIG1	5520	chr3:66512862:-	FHIT	36667	chr3:61027771:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2267	0	LRIG1->Oncogene{Bushman},chr3:66429221-66551687:-,leucine-rich_repeats_and_immunoglobulin_like_domains_1,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	MDAMB415_BREAST	1	1	0.2267	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	MT-TA--MT-TN	6	43	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.08	0.5734	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB415_BREAST	1	1	0.6534	FALSE	369	2501	205	193	0	FALSE	ACH-000876
MDAMB415_BREAST	HSP90AB1--MT-RNR2	15	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2208	0	0.01	1	0.2	0.0133	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MDAMB415_BREAST	0.01	1	0.2133	FALSE	13	9	0	364	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-TA--MT-TN	9	25	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.12	0.3334	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB415_BREAST	1	1	0.4534	FALSE	369	2501	205	193	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND6--MT-TE	11	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1467	0.2	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB415_BREAST	0.96	1	0.3467	FALSE	499	1288	110	792	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-TA--MT-TN	10	18	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1333	0.24	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB415_BREAST	1	1	0.3733	FALSE	369	2501	205	193	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-TA--MT-TN	7	28	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0933	0.3734	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB415_BREAST	1	1	0.4667	FALSE	369	2501	205	193	0	FALSE	ACH-000876
MDAMB415_BREAST	FMN2--RYR2	12	5	FMN2	6146	chr1:240286645:+	RYR2	131018	chr1:237923076:+	ONLY_REF_SPLICE	YES	12	0	0.59	1	0.16	0.0667	FMN2->chr1:240177648-240638489:+,formin_2,RYR2->chr1:237205505-237997288:+,ryanodine_receptor_2	MDAMB415_BREAST	0.59	1	0.2267	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	MT-TA--MT-TN	13	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1734	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB415_BREAST	1	1	0.1734	FALSE	369	2501	205	193	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-TA--MT-TN	9	15	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.12	0.2	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB415_BREAST	1	1	0.32	FALSE	369	2501	205	193	0	FALSE	ACH-000876
MDAMB415_BREAST	PDE6B--PPP2R2D	12	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.16	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	MDAMB415_BREAST	1	1	0.16	TRUE	7	65	3	22	0	FALSE	ACH-000876
MDAMB415_BREAST	RP11-123O10.4--GRIP1	12	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.16	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MDAMB415_BREAST	1	1	0.16	FALSE	416	2512	207	587	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ATP6--MT-CO1	11	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1467	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB415_BREAST	1	1	0.1467	FALSE	183	104	9	328	0	FALSE	ACH-000876
MDAMB415_BREAST	OBFC1--CCSER2	10	4	OBFC1	9778	chr10:105648830:-	CCSER2	22118	chr10:86185487:+	ONLY_REF_SPLICE	YES	24	7	0.37	0.67	0.1333	0.0533	OBFC1->chr10:105642300-105677963:-,oligonucleotide/oligosaccharide_binding_fold_containing_1,CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2	MDAMB415_BREAST	0.37	0.67	0.1866	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	LRP5--RP11-554A11.9	3	28	LRP5	6117	chr11:68133166:+	RP11-554A11.9	35381	chr11:68926914:+	INCL_NON_REF_SPLICE	YES	48	6	0.39	0.84	0.04	0.3734	LRP5->LDL_receptor_related_protein_5,Oncogene{Bushman},chr11:68080077-68216743:+,RP11-554A11.9->chr11:68923378-68927220:+	MDAMB415_BREAST	0.39	0.84	0.4134	TRUE	0	1	0	1	1	TRUE	ACH-000876
MDAMB415_BREAST	MT-ATP6--MT-CO1	10	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1333	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB415_BREAST	1	1	0.1333	FALSE	183	104	9	328	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-TA--MT-TN	4	23	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0.3067	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB415_BREAST	1	1	0.36	FALSE	369	2501	205	193	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND6--MT-TE	4	18	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0533	0.24	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB415_BREAST	0.96	1	0.2933	FALSE	499	1288	110	792	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND6--MT-TE	6	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.08	0.1067	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB415_BREAST	1	1	0.1867	FALSE	499	1288	110	792	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-TA--MT-TC	7	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0933	0.0533	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB415_BREAST	1	1	0.1466	FALSE	462	80	0	856	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND6--MT-TE	5	9	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0.12	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB415_BREAST	1	1	0.1867	FALSE	499	1288	110	792	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ATP6--MT-CO1	6	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.08	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB415_BREAST	1	1	0.08	FALSE	183	104	9	328	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.08	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB415_BREAST	1	1	0.08	FALSE	369	2501	205	193	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-TA--MT-TN	6	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.08	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB415_BREAST	1	1	0.08	FALSE	369	2501	205	193	0	FALSE	ACH-000876
MDAMB415_BREAST	RAD9A--SHANK2	4	8	RAD9A	2906	chr11:67161081:+	SHANK2	59419	chr11:70333825:-	ONLY_REF_SPLICE	YES	74	10	0.14	0.55	0.0533	0.1067	RAD9A->Oncogene{Bushman},RAD9_checkpoint_clamp_component_A,chr11:67159176-67165881:+,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	MDAMB415_BREAST	0.14	0.55	0.16	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	MT-ATP6--MT-CO1	4	7	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	6652	29931	0	0	0.0533	0.0933	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB415_BREAST	0	0	0.1466	FALSE	183	104	9	328	0	FALSE	ACH-000876
MDAMB415_BREAST	RP11-96H19.1--RP11-446N19.1	5	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0667	0.04	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB415_BREAST	1	1	0.1067	FALSE	515	4851	409	746	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-TA--MT-TC	5	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0.0133	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDAMB415_BREAST	1	1	0.08	FALSE	462	80	0	856	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ATP6--MT-CO1	5	0	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB415_BREAST	1	1	0.0667	FALSE	183	104	9	328	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB415_BREAST	1	1	0.0667	FALSE	230	198	14	283	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND4--MT-ATP8	4	4	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2253	45	0	0.15	0.0533	0.0533	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB415_BREAST	0	0.15	0.1066	FALSE	216	209	16	281	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND4--MT-ATP8	5	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB415_BREAST	1	1	0.0667	FALSE	230	198	14	283	0	FALSE	ACH-000876
MDAMB415_BREAST	FMN2--RYR2	4	3	FMN2	6146	chr1:240286645:+	RYR2	133169	chr1:237934107:+	ONLY_REF_SPLICE	YES	12	0	0.37	1	0.0533	0.04	FMN2->chr1:240177648-240638489:+,formin_2,RYR2->chr1:237205505-237997288:+,ryanodine_receptor_2	MDAMB415_BREAST	0.37	1	0.0933	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	MT-ATP6--MT-CO1	4	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3816	32378	0	0	0.0533	0.04	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB415_BREAST	0	0	0.0933	FALSE	183	104	9	328	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ATP6--MT-CO1	4	3	MT-ATP6	1537	chrM:9063:+	MT-CO1	5319	chrM:6541:+	INCL_NON_REF_SPLICE	YES	5135	31513	0	0	0.0533	0.04	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB415_BREAST	0	0	0.0933	FALSE	183	104	9	328	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB415_BREAST	1	1	0.0533	FALSE	231	217	16	283	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND4--MT-ATP8	3	4	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	13855	833	0	0.01	0.04	0.0533	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB415_BREAST	0	0.01	0.0933	FALSE	231	217	16	283	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0533	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB415_BREAST	1	1	0.0533	FALSE	369	2501	205	193	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND4--MT-ATP8	3	3	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	NO	14271	0	0	1	0.04	0.04	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB415_BREAST	0	1	0.08	FALSE	231	217	16	283	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND4--MT-ATP8	3	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	14669	3	0	0.67	0.04	0.04	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB415_BREAST	0	0.67	0.08	FALSE	231	217	16	283	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND4--MT-ATP8	3	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	YES	14669	893	0	0.01	0.04	0.04	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB415_BREAST	0	0.01	0.08	FALSE	231	217	16	283	0	FALSE	ACH-000876
MDAMB415_BREAST	PCAT1--RP11-382A18.2	3	2	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0.0267	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	MDAMB415_BREAST	1	1	0.0667	TRUE	4	84	1	46	0	FALSE	ACH-000876
MDAMB415_BREAST	BPIFB1--BPIFB2	3	1	BPIFB1	11033	chr20:31887790:+	BPIFB2	34824	chr20:31611148:+	ONLY_REF_SPLICE	YES	4293	255	0	0.02	0.04	0.0133	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,HGNC_GENEFAM,BPIFB1->BPI_fold_containing_family_B_member_1,chr20:31861286-31897684:+,BPIFB2->BPI_fold_containing_family_B_member_2,chr20:31595406-31611515:+	MDAMB415_BREAST	0	0.02	0.0533	FALSE	0	0	0	1	0	FALSE	ACH-000876
MDAMB415_BREAST	FMN2--RYR2	3	1	FMN2	6146	chr1:240286645:+	RYR2	136468	chr1:237941966:+	ONLY_REF_SPLICE	YES	12	6	0.25	0.4	0.04	0.0133	FMN2->chr1:240177648-240638489:+,formin_2,RYR2->chr1:237205505-237997288:+,ryanodine_receptor_2	MDAMB415_BREAST	0.25	0.4	0.0533	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	MT-ATP6--MT-CO1	3	1	MT-ATP6	1179	chrM:8705:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	15249	29892	0	0	0.04	0.0133	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB415_BREAST	0	0	0.0533	FALSE	183	104	9	328	0	FALSE	ACH-000876
MDAMB415_BREAST	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.04	0.0133	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB415_BREAST	1	1	0.0533	FALSE	292	1546	117	613	0	FALSE	ACH-000876
MDAMB415_BREAST	ACTN4--MT-CO1	3	0	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB415_BREAST	1	1	0.04	FALSE	0	0	0	30	0	FALSE	ACH-000876
MDAMB415_BREAST	CFLAR--NEDD8	3	0	CFLAR	24420	chr2:202028807:+	NEDD8	46438	chr14:24686429:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	GTEx_FI:{Skin=[count:3=pct:1.0],Pancreas=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=3;pct=0.03%;dist=Kidney_-_Cortex=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_Transformed_fibroblasts=1},CFLAR->CASP8_and_FADD_like_apoptosis_regulator,Oncogene{Bushman},chr2:201980827-202041410:+,NEDD8->chr14:24686058-24701660:-,neural_precursor_cell_expressed,_developmentally_down-regulated_8	MDAMB415_BREAST	1	1	0.04	TRUE	5	2	0	2	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB415_BREAST	1	1	0.04	FALSE	183	104	9	328	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB415_BREAST	1	1	0.04	FALSE	183	104	9	328	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MDAMB415_BREAST	1	1	0.04	FALSE	183	104	9	328	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB415_BREAST	1	1	0.04	FALSE	230	193	14	283	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB415_BREAST	1	1	0.04	FALSE	231	217	16	283	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MDAMB415_BREAST	1	1	0.04	FALSE	231	204	14	283	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB415_BREAST	1	1	0.04	FALSE	499	1288	110	792	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB415_BREAST	1	1	0.04	FALSE	499	1288	110	792	0	FALSE	ACH-000876
MDAMB415_BREAST	MT-TA--MT-TN	3	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MDAMB415_BREAST	1	1	0.04	FALSE	369	2501	205	193	0	FALSE	ACH-000876
MDAMB415_BREAST	PLD3--SCGB2A2	3	0	PLD3	11455	chr19:40882634:+	SCGB2A2	17991	chr11:62038354:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	PLD3->chr19:40854363-40886346:+,phospholipase_D_family_member_3,SCGB2A2->chr11:62037627-62040628:+,secretoglobin_family_2A_member_2	MDAMB415_BREAST	1	1	0.04	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0267	0.0133	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB415_BREAST	0.6	1	0.04	FALSE	164	806	69	479	0	FALSE	ACH-000876
MDAMB415_BREAST	RBBP8--TAF4B	2	1	RBBP8	20867	chr18:20571012:+	TAF4B	50573	chr18:23937654:+	ONLY_REF_SPLICE	YES	40	1	0.07	0.75	0.0267	0.0133	RBBP8->Oncogene{Bushman},chr18:20378224-20606451:+,retinoblastoma_binding_protein_8,TAF4B->TATA-box_binding_protein_associated_factor_4b,chr18:23805900-23971649:+	MDAMB415_BREAST	0.07	0.75	0.04	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	LRIG1--FHIT	2	0	LRIG1	5520	chr3:66512862:-	FHIT	37720	chr3:60807705:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	LRIG1->Oncogene{Bushman},chr3:66429221-66551687:-,leucine-rich_repeats_and_immunoglobulin_like_domains_1,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	MDAMB415_BREAST	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	MAP4K3--TPT1	2	0	MAP4K3	33636	chr2:39481591:-	TPT1	44115	chr13:45911523:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	MAP4K3->chr2:39476407-39664453:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_3,TPT1->chr13:45911008-45915505:-,tumor_protein,_translationally-controlled_1	MDAMB415_BREAST	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	MYEOV--PPFIA1	2	0	MYEOV	1439	chr11:69062043:+	PPFIA1	46814	chr11:70218318:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	MDAMB415_BREAST	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	RCC1--KIF16B	2	0	RCC1	2175	chr1:28834672:+	KIF16B	45927	chr20:16337097:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,KIF16B->chr20:16252749-16554078:-,kinesin_family_member_16B	MDAMB415_BREAST	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000876
MDAMB415_BREAST	RNF152--RP11-879F14.2	2	0	RNF152	2453	chr18:59560028:-	RP11-879F14.2	22428	chr18:59259856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	GTEx_FI:{Blood_Vessel=[count:8=pct:2.2],Brain=[count:5=pct:0.8],Heart=[count:2=pct:0.8],Skin=[count:2=pct:0.6],Lung=[count:2=pct:1.2],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Thyroid=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9]},RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.2->chr18:59252979-59274149:-	MDAMB415_BREAST	1	1	0.0267	TRUE	18	29	3	1	0	FALSE	ACH-000876
MDAMB415_BREAST	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0133	0.04	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB415_BREAST	1	1	0.0533	FALSE	407	2205	196	549	0	FALSE	ACH-000876
MDAMB415_BREAST	CTD-2337A12.1--CAST	1	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	NO	0	124	1	0.02	0.0133	0.0267	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	MDAMB415_BREAST	0.02	1	0.04	TRUE	347	1186	183	220	0	FALSE	ACH-000876
MDAMB415_BREAST	MB21D2--FGF12	1	1	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	4	6	0.33	0.25	0.0133	0.0133	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	MDAMB415_BREAST	0.25	0.33	0.0266	FALSE	0	17	0	46	0	FALSE	ACH-000876
MDAMB415_BREAST	NDUFS1--FASTKD2	1	1	NDUFS1	16037	chr2:206992521:-	FASTKD2	35673	chr2:207636618:+	ONLY_REF_SPLICE	NO	205	46	0.01	0.04	0.0133	0.0133	NDUFS1->NADH:ubiquinone_oxidoreductase_core_subunit_S1,chr2:206979541-207024327:-,FASTKD2->FAST_kinase_domains_2,chr2:207630081-207657233:+	MDAMB415_BREAST	0.01	0.04	0.0266	FALSE	0	0	0	1	0	FALSE	ACH-000876
MDAMB415_BREAST	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0133	0.0133	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAMB415_BREAST	0.67	1	0.0266	FALSE	125	705	46	456	0	FALSE	ACH-000876
MDAMB415_BREAST	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0133	0.0133	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	MDAMB415_BREAST	0.67	1	0.0266	FALSE	81	155	12	160	0	FALSE	ACH-000876
MDAMB415_BREAST	SETD8--CDK2AP1	1	1	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	NO	1	29	0.67	0.06	0.0133	0.0133	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	MDAMB415_BREAST	0.06	0.67	0.0266	TRUE	0	0	0	18	0	TRUE	ACH-000876
EN_ENDOMETRIUM	PDHX--CAT	895	302	PDHX	3068	chr11:34953031:+	CAT	29038	chr11:34485652:+	ONLY_REF_SPLICE	YES	148	44	0.89	0.96	9.0375	3.0495	YOSHIHARA_TCGA_num_samples[BRCA:2],PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CAT->catalase,chr11:34460472-34493609:+	EN_ENDOMETRIUM	0.89	0.96	12.087	TRUE	0	0	0	2	0	TRUE	ACH-000978
EN_ENDOMETRIUM	EPS15--CALR4P	238	35	EPS15	1130	chr1:51984871:-	CALR4P	40825	chr1:52035422:-	ONLY_REF_SPLICE	YES	28	3	0.91	0.99	2.4033	0.3534	LOCAL_REARRANGEMENT:-:[42538],EPS15->Oncogene{Bushman},chr1:51819935-51985000:-,epidermal_growth_factor_receptor_pathway_substrate_15,CALR4P->calreticulin_4,_pseudogene,chr1:52027538-52060569:-	EN_ENDOMETRIUM	0.91	0.99	2.7567	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	SRPK2--PUS7	155	68	SRPK2	2897	chr7:105029095:-	PUS7	46953	chr7:105099706:-	ONLY_REF_SPLICE	YES	49	42	0.82	0.84	1.5651	0.6866	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	EN_ENDOMETRIUM	0.82	0.84	2.2517	TRUE	0	2	0	2	1	TRUE	ACH-000978
EN_ENDOMETRIUM	TIMM23B--LINC00843	91	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9189	0.2625	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EN_ENDOMETRIUM	1	1	1.1814	TRUE	508	994	45	981	0	FALSE	ACH-000978
EN_ENDOMETRIUM	PDHX--CAT	3	309	PDHX	3076	chr11:34953039:+	CAT	27899	chr11:34482798:+	INCL_NON_REF_SPLICE	YES	155	44	0.67	0.88	0.0303	3.1202	YOSHIHARA_TCGA_num_samples[BRCA:2],PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CAT->catalase,chr11:34460472-34493609:+	EN_ENDOMETRIUM	0.67	0.88	3.1505	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	PDHX--CAT	3	304	PDHX	3068	chr11:34953031:+	CAT	27899	chr11:34482798:+	ONLY_REF_SPLICE	YES	148	44	0.67	0.87	0.0303	3.0697	YOSHIHARA_TCGA_num_samples[BRCA:2],PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CAT->catalase,chr11:34460472-34493609:+	EN_ENDOMETRIUM	0.67	0.87	3.1	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	DENND2C--CSDE1	58	0	DENND2C	1440	chr1:115212604:-	CSDE1	36786	chr1:115282511:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5857	0	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[46491],DENND2C->DENN_domain_containing_2C,chr1:115125469-115213043:-,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	EN_ENDOMETRIUM	1	1	0.5857	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	MT-ND5--MT-ND4	56	0	MT-ND5	1606	chrM:12942:+	MT-ND4	6656	chrM:11603:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5655	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	EN_ENDOMETRIUM	1	1	0.5655	FALSE	45	26	1	22	0	FALSE	ACH-000978
EN_ENDOMETRIUM	FOXO3--LACE1	51	11	FOXO3	2995	chr6:108883032:+	LACE1	30074	chr6:108840900:+	ONLY_REF_SPLICE	YES	15	0	0.81	1	0.515	0.1111	LOCAL_REARRANGEMENT:+:[33039],FOXO3->Oncogene{Bushman},chr6:108881038-109005977:+,forkhead_box_O3,LACE1->chr6:108616098-108847999:+,lactation_elevated_1	EN_ENDOMETRIUM	0.81	1	0.6261	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	TIMM23--RP11-464F9.1	50	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	218	4	0.2	0.93	0.5049	0.0303	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EN_ENDOMETRIUM	0.2	0.93	0.5352	TRUE	519	3926	326	965	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND5--MT-ND4	46	0	MT-ND5	2509	chrM:13845:+	MT-ND4	7031	chrM:11978:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4645	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	EN_ENDOMETRIUM	1	1	0.4645	FALSE	45	28	1	23	0	FALSE	ACH-000978
EN_ENDOMETRIUM	SRPK2--PUS7	26	77	SRPK2	4033	chr7:104946883:-	PUS7	46953	chr7:105099706:-	ONLY_REF_SPLICE	YES	47	42	0.69	0.71	0.2625	0.7775	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	EN_ENDOMETRIUM	0.69	0.71	1.04	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	MT-ND6--MT-TE	36	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.3635	0.0101	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EN_ENDOMETRIUM	0.97	1	0.3736	FALSE	499	1288	110	792	0	FALSE	ACH-000978
EN_ENDOMETRIUM	RGS3--BSPRY	31	15	RGS3	4942	chr9:116226161:+	BSPRY	46311	chr9:116116520:+	ONLY_REF_SPLICE	YES	21	1	0.69	0.98	0.313	0.1515	LOCAL_REARRANGEMENT:+:[73498],RGS3->Oncogene{Bushman},chr9:116207011-116360018:+,regulator_of_G-protein_signaling_3,BSPRY->B-box_and_SPRY_domain_containing,Oncogene{Bushman},chr9:116111821-116133513:+	EN_ENDOMETRIUM	0.69	0.98	0.4645	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	RP11-123O10.4--GRIP1	33	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3332	0.0606	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	EN_ENDOMETRIUM	1	1	0.3938	FALSE	416	2512	207	587	0	FALSE	ACH-000978
EN_ENDOMETRIUM	PDHX--CAT	2	128	PDHX	1987	chr11:34938362:+	CAT	29038	chr11:34485652:+	ONLY_REF_SPLICE	YES	105	44	0.55	0.75	0.0202	1.2925	YOSHIHARA_TCGA_num_samples[BRCA:2],PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CAT->catalase,chr11:34460472-34493609:+	EN_ENDOMETRIUM	0.55	0.75	1.3127	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	RP11-344E13.3--UBBP4	25	32	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	224	0	0.2	1	0.2524	0.3231	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	EN_ENDOMETRIUM	0.2	1	0.5755	TRUE	23	13	0	54	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	30	0	MT-ATP6	1098	chrM:8624:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3029	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	1	1	0.3029	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	C2CD2--BARX2	28	4	C2CD2	17364	chr21:43319162:-	BARX2	27458	chr11:129306646:+	ONLY_REF_SPLICE	YES	11	0	0.74	1	0.2827	0.0404	C2CD2->C2_calcium-dependent_domain_containing_2,chr21:43305221-43373999:-,BARX2->BARX_homeobox_2,chr11:129245835-129322171:+	EN_ENDOMETRIUM	0.74	1	0.3231	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	UBE2D3--SLC9B1	25	12	UBE2D3	1182	chr4:103789872:-	SLC9B1	31207	chr4:103833286:-	ONLY_REF_SPLICE	YES	4	1	0.9	0.97	0.2524	0.1212	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[16152],UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,SLC9B1->chr4:103806205-103940896:-,solute_carrier_family_9_member_B1	EN_ENDOMETRIUM	0.9	0.97	0.3736	TRUE	0	2	0	1	2	TRUE	ACH-000978
EN_ENDOMETRIUM	UBE2D3--SLC9B1	24	9	UBE2D3	1182	chr4:103789872:-	SLC9B1	31799	chr4:103832694:-	ONLY_REF_SPLICE	YES	4	3	0.89	0.92	0.2423	0.0909	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[16152],UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,SLC9B1->chr4:103806205-103940896:-,solute_carrier_family_9_member_B1	EN_ENDOMETRIUM	0.89	0.92	0.3332	TRUE	0	2	0	1	2	TRUE	ACH-000978
EN_ENDOMETRIUM	MT-ND6--MT-TE	24	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2423	0.0606	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EN_ENDOMETRIUM	0.97	1	0.3029	FALSE	499	1288	110	792	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND5--MT-ND4	21	3	MT-ND5	2470	chrM:13806:+	MT-ND4	6656	chrM:11603:+	INCL_NON_REF_SPLICE	YES	2326	4222	0.01	0.01	0.2121	0.0303	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	EN_ENDOMETRIUM	0.01	0.01	0.2424	FALSE	47	28	1	24	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND5--MT-ND4	19	11	MT-ND5	2794	chrM:14130:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	0	8538	1	0	0.1919	0.1111	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	EN_ENDOMETRIUM	0	1	0.303	FALSE	47	27	1	24	0	FALSE	ACH-000978
EN_ENDOMETRIUM	SRPK2--PUS7	4	71	SRPK2	3923	chr7:104946993:-	PUS7	46953	chr7:105099706:-	INCL_NON_REF_SPLICE	YES	52	42	0.59	0.64	0.0404	0.7169	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	EN_ENDOMETRIUM	0.59	0.64	0.7573	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	21	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12490	24	0	0.49	0.2121	0.0202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	0.49	0.2323	FALSE	230	198	14	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	SRPK2--PUS7	3	74	SRPK2	3969	chr7:104946947:-	PUS7	46953	chr7:105099706:-	INCL_NON_REF_SPLICE	YES	53	42	0.59	0.65	0.0303	0.7472	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	EN_ENDOMETRIUM	0.59	0.65	0.7775	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	RP11-680G10.1--GSE1	20	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	40	1	0.38	0.202	0.0505	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	EN_ENDOMETRIUM	0.38	1	0.2525	TRUE	458	1351	185	561	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	18	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14146	24	0	0.45	0.1818	0.0202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	0.45	0.202	FALSE	231	205	14	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	SRPK2--PUS7	1	69	SRPK2	2897	chr7:105029095:-	PUS7	32129	chr7:105148991:-	ONLY_REF_SPLICE	YES	49	70	0.59	0.5	0.0101	0.6967	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	EN_ENDOMETRIUM	0.5	0.59	0.7068	TRUE	0	2	0	1	2	TRUE	ACH-000978
EN_ENDOMETRIUM	TRAF3--TECPR2	18	0	TRAF3	1200	chr14:103244012:+	TECPR2	28338	chr14:102873675:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1818	0	TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+,TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2	EN_ENDOMETRIUM	1	1	0.1818	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	AP003900.6--AC008079.9	17	3	AP003900.6	3299	chr21:11174002:+	AC008079.9	9069	chr22:18682508:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1717	0.0303	AP003900.6->chr21:11169720-11184046:+,AC008079.9->chr22:18660805-18688682:-	EN_ENDOMETRIUM	1	1	0.202	TRUE	0	1	0	3	1	TRUE	ACH-000978
EN_ENDOMETRIUM	FUZ--LMTK3	17	3	FUZ	7255	chr19:50311671:-	LMTK3	14482	chr19:49013430:-	ONLY_REF_SPLICE	YES	109	0	0.16	1	0.1717	0.0303	FUZ->chr19:50310126-50320633:-,fuzzy_planar_cell_polarity_protein,LMTK3->chr19:48988528-49016446:-,lemur_tyrosine_kinase_3	EN_ENDOMETRIUM	0.16	1	0.202	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	MT-ND6--MT-TE	16	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	15	0	0.59	1	0.1616	0.0606	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EN_ENDOMETRIUM	0.59	1	0.2222	FALSE	499	1288	110	792	0	FALSE	ACH-000978
EN_ENDOMETRIUM	CTD-3105H18.16--PRDX2	16	1	CTD-3105H18.16	1171	chr19:12551726:-	PRDX2	7257	chr19:12912084:-	ONLY_REF_SPLICE	YES	3	162	0.85	0.09	0.1616	0.0101	CTD-3105H18.16->chr19:12502763-12551896:-,PRDX2->chr19:12907634-12912694:-,peroxiredoxin_2	EN_ENDOMETRIUM	0.09	0.85	0.1717	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	HSP90AB1--MT-RNR2	15	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2458	0	0.01	1	0.1515	0.0101	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EN_ENDOMETRIUM	0.01	1	0.1616	FALSE	13	9	0	364	0	FALSE	ACH-000978
EN_ENDOMETRIUM	C15orf57--CBX3	12	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	31	28	0.39	0.42	0.1212	0.0808	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EN_ENDOMETRIUM	0.39	0.42	0.202	TRUE	267	562	48	632	0	FALSE	ACH-000978
EN_ENDOMETRIUM	SRPK2--PUS7	3	44	SRPK2	2754	chr7:105029238:-	PUS7	46953	chr7:105099706:-	ONLY_REF_SPLICE	YES	42	42	0.53	0.53	0.0303	0.4443	YOSHIHARA_TCGA_num_samples[BRCA:2|THCA:1],LOCAL_REARRANGEMENT:-:[40353],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative)	EN_ENDOMETRIUM	0.53	0.53	0.4746	TRUE	0	2	0	2	1	TRUE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	13	3	MT-ATP6	1171	chrM:8697:+	MT-ND2	5502	chrM:5290:+	INCL_NON_REF_SPLICE	YES	9222	10808	0	0	0.1313	0.0303	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0	0.1616	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND5--MT-ND4	3	43	MT-ND5	2813	chrM:14149:+	MT-ND4	5799	chrM:10746:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0.4342	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	EN_ENDOMETRIUM	1	1	0.4645	FALSE	27	25	1	22	0	FALSE	ACH-000978
EN_ENDOMETRIUM	RP11-438J1.1--IRAK2	13	3	RP11-438J1.1	7546	chr3:10320718:+	IRAK2	21870	chr3:10268055:+	ONLY_REF_SPLICE	YES	102	1	0.14	0.94	0.1313	0.0303	LOCAL_REARRANGEMENT:+:[5629],RP11-438J1.1->chr3:10291056-10327480:+,IRAK2->Oncogene{Bushman},chr3:10206549-10285427:+,interleukin_1_receptor_associated_kinase_2	EN_ENDOMETRIUM	0.14	0.94	0.1616	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	ZC3HAV1L--KLRG2	10	10	ZC3HAV1L	2487	chr7:138719289:-	KLRG2	10702	chr7:139164993:-	ONLY_REF_SPLICE	YES	10	2	0.67	0.91	0.101	0.101	ZC3HAV1L->chr7:138710452-138720775:-,zinc_finger_CCCH-type_containing,_antiviral_1_like,KLRG2->chr7:139137436-139168458:-,killer_cell_lectin_like_receptor_G2	EN_ENDOMETRIUM	0.67	0.91	0.202	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	12	1	MT-ATP6	1130	chrM:8656:+	MT-ND2	5517	chrM:5305:+	INCL_NON_REF_SPLICE	YES	7700	9980	0	0	0.1212	0.0101	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0	0.1313	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND6--MT-TE	12	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1212	0.0101	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EN_ENDOMETRIUM	0.93	1	0.1313	FALSE	499	1288	110	792	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	12	0	MT-ATP6	1123	chrM:8649:+	MT-ND2	5567	chrM:5355:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1212	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	1	1	0.1212	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	10	5	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14702	24	0	0.38	0.101	0.0505	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	0.38	0.1515	FALSE	231	217	16	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	C15orf57--CBX3	9	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	29	28	0.36	0.36	0.0909	0.0707	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EN_ENDOMETRIUM	0.36	0.36	0.1616	TRUE	267	562	48	632	0	FALSE	ACH-000978
EN_ENDOMETRIUM	RP11-680G10.1--GSE1	10	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	76	1	0.15	0.101	0.0303	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	EN_ENDOMETRIUM	0.15	1	0.1313	TRUE	465	1949	224	605	0	FALSE	ACH-000978
EN_ENDOMETRIUM	SCARB1--UBC	10	3	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	175	108	0.07	0.11	0.101	0.0303	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	EN_ENDOMETRIUM	0.07	0.11	0.1313	TRUE	55	66	6	101	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	10	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	12783	18	0	0.4	0.101	0.0202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	0.4	0.1212	FALSE	230	193	14	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	AP000525.9--LA16c-60G3.6	10	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	13	0	0.46	1	0.101	0.0101	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	EN_ENDOMETRIUM	0.46	1	0.1111	TRUE	0	42	0	133	42	FALSE	ACH-000978
EN_ENDOMETRIUM	RP11-444D3.1--SOX5	10	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	12	1	0.48	0.101	0.0101	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	EN_ENDOMETRIUM	0.48	1	0.1111	TRUE	477	1352	189	275	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	9	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	15425	0	0	1	0.0909	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	1	0.1313	FALSE	231	217	16	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	8	8	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14444	56	0	0.22	0.0808	0.0808	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	0.22	0.1616	FALSE	231	217	16	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND5--MT-ND4	7	12	MT-ND5	2718	chrM:14054:+	MT-ND4	6199	chrM:11146:+	INCL_NON_REF_SPLICE	YES	10	16038	0.66	0	0.0707	0.1212	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	EN_ENDOMETRIUM	0	0.66	0.1919	FALSE	47	27	1	24	0	FALSE	ACH-000978
EN_ENDOMETRIUM	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2455	0	0	1	0.0909	0.0101	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EN_ENDOMETRIUM	0	1	0.101	FALSE	13	9	0	364	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND5--MT-ND4	3	24	MT-ND5	2731	chrM:14067:+	MT-ND4	5927	chrM:10874:+	INCL_NON_REF_SPLICE	YES	4	1847	0.87	0.01	0.0303	0.2423	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	EN_ENDOMETRIUM	0.01	0.87	0.2726	FALSE	29	25	1	23	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	6	10	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14542	56	0	0.22	0.0606	0.101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	0.22	0.1616	FALSE	231	217	16	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	ADAM32--ADAM9	7	5	ADAM32	5476	chr8:38994237:+	ADAM9	50905	chr8:38899465:+	ONLY_REF_SPLICE	YES	6	163	0.67	0.07	0.0707	0.0505	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[1846],ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+,ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+	EN_ENDOMETRIUM	0.07	0.67	0.1212	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	5	13	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	14149	0	0	1	0.0505	0.1313	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	1	0.1818	FALSE	231	215	16	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	DENND2C--CSDE1	8	0	DENND2C	1430	chr1:115212614:-	CSDE1	36786	chr1:115282511:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0808	0	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[46491],DENND2C->DENN_domain_containing_2C,chr1:115125469-115213043:-,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	EN_ENDOMETRIUM	1	1	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	3	20	MT-ATP6	1561	chrM:9087:+	MT-ND2	4707	chrM:4495:+	INCL_NON_REF_SPLICE	NO	2136	0	0.01	1	0.0303	0.202	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0.01	1	0.2323	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND5--MT-ND4	7	4	MT-ND5	2247	chrM:13583:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	2794	8538	0	0	0.0707	0.0404	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	EN_ENDOMETRIUM	0	0	0.1111	FALSE	47	29	1	24	0	FALSE	ACH-000978
EN_ENDOMETRIUM	PDHX--CAT	1	27	PDHX	1987	chr11:34938362:+	CAT	30169	chr11:34489835:+	ONLY_REF_SPLICE	YES	105	121	0.21	0.19	0.0101	0.2726	YOSHIHARA_TCGA_num_samples[BRCA:2],PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CAT->catalase,chr11:34460472-34493609:+	EN_ENDOMETRIUM	0.19	0.21	0.2827	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	7	2	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12706	24	0	0.27	0.0707	0.0202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	0.27	0.0909	FALSE	230	193	14	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND5--MT-ND4	3	18	MT-ND5	2730	chrM:14066:+	MT-ND4	6084	chrM:11031:+	INCL_NON_REF_SPLICE	YES	4	11799	0.84	0	0.0303	0.1818	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	EN_ENDOMETRIUM	0	0.84	0.2121	FALSE	47	27	1	23	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND5--MT-ND4	3	17	MT-ND5	2338	chrM:13674:+	MT-ND4	5998	chrM:10945:+	INCL_NON_REF_SPLICE	NO	2248	7334	0.01	0	0.0303	0.1717	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	EN_ENDOMETRIUM	0	0.01	0.202	FALSE	30	27	1	23	0	FALSE	ACH-000978
EN_ENDOMETRIUM	KIF13A--TPMT	7	0	KIF13A	1570	chr6:17987285:-	TPMT	57872	chr6:18132408:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0707	0	{Klijn_CCL:Head-Neck=1,Lymphoid=1},KIF13A->chr6:17759414-17987854:-,kinesin_family_member_13A,TPMT->chr6:18128542-18155305:-,thiopurine_S-methyltransferase	EN_ENDOMETRIUM	1	1	0.0707	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	MT-ND5--MT-ND4	6	4	MT-ND5	2290	chrM:13626:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	2292	8538	0	0	0.0606	0.0404	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	EN_ENDOMETRIUM	0	0	0.101	FALSE	47	29	1	24	0	FALSE	ACH-000978
EN_ENDOMETRIUM	RP11-123O10.4--GRIP1	5	8	RP11-123O10.4	2167	chr12:67285681:-	GRIP1	11081	chr12:66990707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0.0808	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	EN_ENDOMETRIUM	1	1	0.1313	FALSE	0	5	0	12	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	3	15	MT-ATP6	1557	chrM:9083:+	MT-ND2	5119	chrM:4907:+	INCL_NON_REF_SPLICE	YES	2418	22080	0.01	0	0.0303	0.1515	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0.01	0.1818	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND5--MT-ND4	5	7	MT-ND5	2297	chrM:13633:+	MT-ND4	6279	chrM:11226:+	INCL_NON_REF_SPLICE	YES	2270	15869	0.01	0	0.0505	0.0707	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	EN_ENDOMETRIUM	0	0.01	0.1212	FALSE	47	29	1	24	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	3	14	MT-ATP6	1295	chrM:8821:+	MT-ND2	4712	chrM:4500:+	INCL_NON_REF_SPLICE	YES	11674	0	0	1	0.0303	0.1414	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	1	0.1717	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND5--MT-ND4	3	14	MT-ND5	2344	chrM:13680:+	MT-ND4	6096	chrM:11043:+	INCL_NON_REF_SPLICE	YES	2194	12337	0.01	0	0.0303	0.1414	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	EN_ENDOMETRIUM	0	0.01	0.1717	FALSE	47	29	1	23	0	FALSE	ACH-000978
EN_ENDOMETRIUM	APP--MT-ND2	6	1	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	764	9137	0.01	0	0.0606	0.0101	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0.01	0.0707	FALSE	0	1	0	51	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	4	9	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	14702	0	0	1	0.0404	0.0909	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	1	0.1313	FALSE	231	217	16	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	5	5	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	16207	0	0	1	0.0505	0.0505	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	1	0.101	FALSE	231	217	16	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND5--MT-ND4	3	13	MT-ND5	2112	chrM:13448:+	MT-ND4	5896	chrM:10843:+	INCL_NON_REF_SPLICE	YES	3239	5	0	0.76	0.0303	0.1313	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	EN_ENDOMETRIUM	0	0.76	0.1616	FALSE	32	27	1	23	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND6--MT-TE	3	13	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0303	0.1313	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EN_ENDOMETRIUM	0.94	1	0.1616	FALSE	499	1288	110	792	0	FALSE	ACH-000978
EN_ENDOMETRIUM	APP--MT-ND2	6	0	APP	11619	chr21:27394230:-	MT-ND2	32998	chrM:5292:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	1	1	0.0606	FALSE	0	1	0	51	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	5	4	MT-ATP6	1166	chrM:8692:+	MT-ND2	5497	chrM:5285:+	INCL_NON_REF_SPLICE	YES	8946	11356	0	0	0.0505	0.0404	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0	0.0909	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	5	4	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16877	56	0	0.14	0.0505	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	0.14	0.0909	FALSE	231	217	16	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	5	3	MT-ATP6	1153	chrM:8679:+	MT-ND2	5576	chrM:5364:+	INCL_NON_REF_SPLICE	YES	8625	5368	0	0	0.0505	0.0303	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0	0.0808	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	3	11	MT-ATP6	1223	chrM:8749:+	MT-ND2	4884	chrM:4672:+	INCL_NON_REF_SPLICE	YES	10608	13526	0	0	0.0303	0.1111	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0	0.1414	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	4	0.88	0.64	0.0505	0.0202	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EN_ENDOMETRIUM	0.64	0.88	0.0707	FALSE	467	2173	244	435	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MCU--FAM149B1	5	1	MCU	1171	chr10:74452059:+	FAM149B1	29975	chr10:74987818:+	ONLY_REF_SPLICE	YES	16	15	0.27	0.29	0.0505	0.0101	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,FAM149B1->chr10:74927924-75004262:+,family_with_sequence_similarity_149_member_B1	EN_ENDOMETRIUM	0.27	0.29	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	9	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	14760	0	0	1	0.0303	0.0909	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	1	0.1212	FALSE	231	217	16	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND6--MT-TE	3	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	14	0	0.46	1	0.0303	0.0909	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EN_ENDOMETRIUM	0.46	1	0.1212	FALSE	499	1288	110	792	0	FALSE	ACH-000978
EN_ENDOMETRIUM	RP11-120D5.1--MID1	5	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	35	0.46	0.15	0.0505	0.0101	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	EN_ENDOMETRIUM	0.15	0.46	0.0606	FALSE	16	356	14	466	0	FALSE	ACH-000978
EN_ENDOMETRIUM	APP--MT-ND2	5	0	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	1	1	0.0505	FALSE	0	1	0	51	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	5	0	MT-ATP6	1123	chrM:8649:+	MT-ND2	5507	chrM:5295:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	1	1	0.0505	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	4	4	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	14782	1302	0	0.01	0.0404	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	0.01	0.0808	FALSE	231	217	16	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	8	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	14667	4	0	0.73	0.0303	0.0808	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	0.73	0.1111	FALSE	231	217	16	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND6--MT-TE	5	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EN_ENDOMETRIUM	1	1	0.0505	FALSE	499	1288	110	792	0	FALSE	ACH-000978
EN_ENDOMETRIUM	RGS3--BSPRY	5	0	RGS3	3789	chr9:116224481:+	BSPRY	46311	chr9:116116520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0505	0	LOCAL_REARRANGEMENT:+:[73498],RGS3->Oncogene{Bushman},chr9:116207011-116360018:+,regulator_of_G-protein_signaling_3,BSPRY->B-box_and_SPRY_domain_containing,Oncogene{Bushman},chr9:116111821-116133513:+	EN_ENDOMETRIUM	1	1	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	3	7	MT-ATP6	1567	chrM:9093:+	MT-ND2	5507	chrM:5295:+	INCL_NON_REF_SPLICE	YES	1548	10693	0.01	0	0.0303	0.0707	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0.01	0.101	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	4	3	MT-ATP6	1158	chrM:8684:+	MT-ND2	5581	chrM:5369:+	INCL_NON_REF_SPLICE	YES	9028	4911	0	0	0.0404	0.0303	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0	0.0707	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	4	3	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16207	56	0	0.11	0.0404	0.0303	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	0.11	0.0707	FALSE	231	217	16	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	FGF22--CDC34	4	2	FGF22	1261	chr19:640139:+	CDC34	8577	chr19:535837:+	ONLY_REF_SPLICE	YES	1	60	0.86	0.09	0.0404	0.0202	LOCAL_REARRANGEMENT:+:[97782],FGF22->chr19:639879-643703:+,fibroblast_growth_factor_22,CDC34->Oncogene{Bushman},cell_division_cycle_34,chr19:531714-542097:+	EN_ENDOMETRIUM	0.09	0.86	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	3	6	MT-ATP6	1555	chrM:9081:+	MT-ND2	5539	chrM:5327:+	INCL_NON_REF_SPLICE	YES	2725	8785	0	0	0.0303	0.0606	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0	0.0909	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	APP--MT-ND2	4	1	APP	11633	chr21:27394216:-	MT-ND2	33011	chrM:5305:+	INCL_NON_REF_SPLICE	YES	755	9936	0.01	0	0.0404	0.0101	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0.01	0.0505	FALSE	0	1	0	51	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	4	1	MT-ATP6	1410	chrM:8936:+	MT-ND2	5601	chrM:5389:+	INCL_NON_REF_SPLICE	YES	8530	2232	0	0	0.0404	0.0101	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0	0.0505	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	3	5	MT-ATP6	1303	chrM:8829:+	MT-ND2	5561	chrM:5349:+	INCL_NON_REF_SPLICE	YES	11556	6814	0	0	0.0303	0.0505	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0	0.0808	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	4	1	MT-ATP6	1136	chrM:8662:+	MT-ND2	5498	chrM:5286:+	INCL_NON_REF_SPLICE	YES	7921	11294	0	0	0.0404	0.0101	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0	0.0505	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	UBE2D3--SLC9B1	4	1	UBE2D3	1182	chr4:103789872:-	SLC9B1	33903	chr4:103827801:-	ONLY_REF_SPLICE	YES	4	6	0.56	0.45	0.0404	0.0101	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[16152],UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3,SLC9B1->chr4:103806205-103940896:-,solute_carrier_family_9_member_B1	EN_ENDOMETRIUM	0.45	0.56	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	DENND2C--CSDE1	4	0	DENND2C	1440	chr1:115212604:-	CSDE1	37985	chr1:115280693:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[46491],DENND2C->DENN_domain_containing_2C,chr1:115125469-115213043:-,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	EN_ENDOMETRIUM	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	3	4	MT-ATP6	1161	chrM:8687:+	MT-ND2	5496	chrM:5284:+	INCL_NON_REF_SPLICE	YES	9085	11513	0	0	0.0303	0.0404	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0	0.0707	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	4	0	MT-ATP6	1082	chrM:8608:+	MT-ND2	5507	chrM:5295:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	1	1	0.0404	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	3	4	MT-ATP6	1137	chrM:8663:+	MT-ND2	4927	chrM:4715:+	INCL_NON_REF_SPLICE	YES	8101	16151	0	0	0.0303	0.0404	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0	0.0707	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	3	4	MT-ATP6	1159	chrM:8685:+	MT-ND2	5490	chrM:5278:+	INCL_NON_REF_SPLICE	YES	9068	11920	0	0	0.0303	0.0404	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0	0.0707	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	4	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	14707	772	0	0.01	0.0303	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	0.01	0.0707	FALSE	231	217	16	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	3	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	17170	617	0	0.01	0.0303	0.0303	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	0.01	0.0606	FALSE	231	217	16	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	ADAM32--ADAM9	3	2	ADAM32	1844	chr8:38965352:+	ADAM9	52077	chr8:38912000:+	ONLY_REF_SPLICE	YES	12	158	0.29	0.03	0.0303	0.0202	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[1846],ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+,ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+	EN_ENDOMETRIUM	0.03	0.29	0.0505	TRUE	0	0	0	1	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	3	2	MT-ATP6	1140	chrM:8666:+	MT-ND2	5395	chrM:5183:+	INCL_NON_REF_SPLICE	YES	8239	16412	0	0	0.0303	0.0202	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0	0.0505	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	2	MT-ND4	1314	chrM:11073:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	16103	5	0	0.5	0.0303	0.0202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	0.5	0.0505	FALSE	231	205	14	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	15412	5	0	0.5	0.0303	0.0202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	0.5	0.0505	FALSE	231	205	14	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	2	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	8392	0	0	1	0.0303	0.0202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	1	0.0505	FALSE	230	193	14	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	2	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	16161	1302	0	0	0.0303	0.0202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	0	0.0505	FALSE	231	205	14	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND4--MT-ATP8	3	2	MT-ND4	1294	chrM:11053:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	14926	16	0	0.24	0.0303	0.0202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EN_ENDOMETRIUM	0	0.24	0.0505	FALSE	231	205	14	283	0	FALSE	ACH-000978
EN_ENDOMETRIUM	RP11-120D5.1--MID1	3	2	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	35	0.56	0.12	0.0303	0.0202	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	EN_ENDOMETRIUM	0.12	0.56	0.0505	FALSE	2	31	0	60	0	FALSE	ACH-000978
EN_ENDOMETRIUM	ZC3HAV1L--KLRG2	3	2	ZC3HAV1L	2487	chr7:138719289:-	KLRG2	12323	chr7:139138960:-	ONLY_REF_SPLICE	YES	10	11	0.33	0.31	0.0303	0.0202	ZC3HAV1L->chr7:138710452-138720775:-,zinc_finger_CCCH-type_containing,_antiviral_1_like,KLRG2->chr7:139137436-139168458:-,killer_cell_lectin_like_receptor_G2	EN_ENDOMETRIUM	0.31	0.33	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	APP--MT-ND2	3	1	APP	11652	chr21:27394197:-	MT-ND2	33030	chrM:5324:+	INCL_NON_REF_SPLICE	YES	886	8777	0	0	0.0303	0.0101	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0	0	0.0404	FALSE	0	1	0	51	0	FALSE	ACH-000978
EN_ENDOMETRIUM	C19orf70--LUZP2	3	1	C19orf70	2552	chr19:5679356:-	LUZP2	25143	chr11:25098875:+	ONLY_REF_SPLICE	YES	217	0	0.02	1	0.0303	0.0101	C19orf70->chr19:5678432-5680907:-,chromosome_19_open_reading_frame_70,LUZP2->chr11:24518516-25104150:+,leucine_zipper_protein_2	EN_ENDOMETRIUM	0.02	1	0.0404	TRUE	0	0	0	1	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MCU--FAM149B1	3	1	MCU	5898	chr10:74475660:+	FAM149B1	29975	chr10:74987818:+	ONLY_REF_SPLICE	YES	33	15	0.11	0.21	0.0303	0.0101	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,FAM149B1->chr10:74927924-75004262:+,family_with_sequence_similarity_149_member_B1	EN_ENDOMETRIUM	0.11	0.21	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	MT-TW--MT-ND2	3	1	MT-TW	1010	chrM:5521:+	MT-ND2	4893	chrM:5294:+	INCL_NON_REF_SPLICE	YES	0	49	1	0.08	0.0303	0.0101	LOCAL_REARRANGEMENT:+:[1],MT-TW->chrM:5512-5579:+,mitochondrially_encoded_tRNA_tryptophan,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	0.08	1	0.0404	FALSE	14	0	0	19	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	3	0	MT-ATP6	1084	chrM:8610:+	MT-ND2	5096	chrM:4884:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	1	1	0.0303	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	3	0	MT-ATP6	1120	chrM:8646:+	MT-ND2	5131	chrM:4919:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	1	1	0.0303	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ATP6--MT-ND2	3	0	MT-ATP6	1107	chrM:8633:+	MT-ND2	5117	chrM:4905:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	EN_ENDOMETRIUM	1	1	0.0303	FALSE	177	96	13	17	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MT-ND5--MT-ND4	3	0	MT-ND5	1581	chrM:12917:+	MT-ND4	7079	chrM:12026:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	EN_ENDOMETRIUM	1	1	0.0303	FALSE	45	24	1	19	0	FALSE	ACH-000978
EN_ENDOMETRIUM	SMARCD3--RHEB	2	4	SMARCD3	3331	chr7:150972200:-	RHEB	24640	chr7:151168691:-	ONLY_REF_SPLICE	YES	24	278	0.2	0.02	0.0202	0.0404	SMARCD3->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_d,_member_3,chr7:150935850-150974982:-,RHEB->Ras_homolog_enriched_in_brain,chr7:151163098-151217206:-	EN_ENDOMETRIUM	0.02	0.2	0.0606	TRUE	0	0	0	1	0	FALSE	ACH-000978
EN_ENDOMETRIUM	XPR1--KIAA1614	2	3	XPR1	16140	chr1:180849433:+	KIAA1614	28290	chr1:180885290:+	ONLY_REF_SPLICE	YES	341	2	0.01	0.71	0.0202	0.0303	NEIGHBORS[22903],XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,KIAA1614->KIAA1614,chr1:180882290-180920750:+	EN_ENDOMETRIUM	0.01	0.71	0.0505	FALSE	0	0	0	1	0	FALSE	ACH-000978
EN_ENDOMETRIUM	ZC3HAV1L--KLRG2	1	7	ZC3HAV1L	2487	chr7:138719289:-	KLRG2	11177	chr7:139164518:-	ONLY_REF_SPLICE	YES	10	1	0.44	0.89	0.0101	0.0707	ZC3HAV1L->chr7:138710452-138720775:-,zinc_finger_CCCH-type_containing,_antiviral_1_like,KLRG2->chr7:139137436-139168458:-,killer_cell_lectin_like_receptor_G2	EN_ENDOMETRIUM	0.44	0.89	0.0808	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	AP003900.6--AC008079.9	2	2	AP003900.6	3299	chr21:11174002:+	AC008079.9	10621	chr22:18679010:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0.0202	AP003900.6->chr21:11169720-11184046:+,AC008079.9->chr22:18660805-18688682:-	EN_ENDOMETRIUM	1	1	0.0404	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	CALD1--AKR1B15	2	2	CALD1	3555	chr7:134464500:+	AKR1B15	46831	chr7:134262456:+	ONLY_REF_SPLICE	YES	241	0	0.02	1	0.0202	0.0202	CALD1->caldesmon_1,chr7:134429003-134655479:+,AKR1B15->aldo-keto_reductase_family_1,_member_B15,chr7:134233888-134264627:+	EN_ENDOMETRIUM	0.02	1	0.0404	TRUE	0	0	0	1	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MAML2--CCDC82	2	1	MAML2	2798	chr11:96074547:-	CCDC82	28987	chr11:96092342:-	ONLY_REF_SPLICE	YES	30	55	0.09	0.05	0.0202	0.0101	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[9589],MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,CCDC82->chr11:96085933-96123087:-,coiled-coil_domain_containing_82	EN_ENDOMETRIUM	0.05	0.09	0.0303	TRUE	1	0	0	1	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MCU--FAM149B1	2	1	MCU	8107	chr10:74520430:+	FAM149B1	29975	chr10:74987818:+	ONLY_REF_SPLICE	YES	34	15	0.08	0.17	0.0202	0.0101	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,FAM149B1->chr10:74927924-75004262:+,family_with_sequence_similarity_149_member_B1	EN_ENDOMETRIUM	0.08	0.17	0.0303	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	NRD1--RAB3B	2	1	NRD1	12629	chr1:52287170:-	RAB3B	41390	chr1:52385786:-	ONLY_REF_SPLICE	YES	153	45	0.02	0.06	0.0202	0.0101	LOCAL_REARRANGEMENT:-:[29151],NRD1->chr1:52254863-52344477:-,RAB3B->RAB3B,_member_RAS_oncogene_family,chr1:52373628-52456436:-	EN_ENDOMETRIUM	0.02	0.06	0.0303	TRUE	0	0	0	1	0	FALSE	ACH-000978
EN_ENDOMETRIUM	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	15	1	0.17	0.0202	0.0101	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	EN_ENDOMETRIUM	0.17	1	0.0303	TRUE	160	277	29	98	0	FALSE	ACH-000978
EN_ENDOMETRIUM	YWHAE--CRK	2	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1660	125	0	0.02	0.0202	0.0101	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	EN_ENDOMETRIUM	0	0.02	0.0303	FALSE	6	50	7	115	0	FALSE	ACH-000978
EN_ENDOMETRIUM	ARID4B--CCSAP	2	0	ARID4B	34552	chr1:235324208:-	CCSAP	49336	chr1:229462753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	ARID4B->AT-rich_interaction_domain_4B,chr1:235294949-235491534:-,CCSAP->centriole,_cilia_and_spindle_associated_protein,chr1:229456758-229479041:-	EN_ENDOMETRIUM	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	CLIC4--SRRM1	2	0	CLIC4	3416	chr1:25124342:+	SRRM1	20487	chr1:24972475:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[72090],CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	EN_ENDOMETRIUM	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	DENND2C--CSDE1	2	0	DENND2C	1440	chr1:115212604:-	CSDE1	36951	chr1:115282346:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[46491],DENND2C->DENN_domain_containing_2C,chr1:115125469-115213043:-,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	EN_ENDOMETRIUM	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	RP11-114H23.1--RP11-114H23.2	2	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	EN_ENDOMETRIUM	1	1	0.0202	FALSE	81	155	12	160	0	FALSE	ACH-000978
EN_ENDOMETRIUM	RP11-120D5.1--MID1	2	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	EN_ENDOMETRIUM	1	1	0.0202	FALSE	0	48	1	163	0	FALSE	ACH-000978
EN_ENDOMETRIUM	TXNRD1--STAB2	2	0	TXNRD1	11664	chr12:104682818:+	STAB2	87427	chr12:104129269:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,STAB2->chr12:103981051-104160505:+,stabilin_2	EN_ENDOMETRIUM	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	ADAM32--ADAM9	1	3	ADAM32	1844	chr8:38965352:+	ADAM9	50905	chr8:38899465:+	ONLY_REF_SPLICE	YES	12	163	0.25	0.02	0.0101	0.0303	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[1846],ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+,ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+	EN_ENDOMETRIUM	0.02	0.25	0.0404	TRUE	0	0	0	1	0	FALSE	ACH-000978
EN_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	2	0.8	0.67	0.0101	0.0303	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EN_ENDOMETRIUM	0.67	0.8	0.0404	FALSE	192	492	57	212	0	FALSE	ACH-000978
EN_ENDOMETRIUM	CALD1--AKR1B15	1	2	CALD1	3555	chr7:134464500:+	AKR1B15	44547	chr7:134260172:+	ONLY_REF_SPLICE	NO	241	0	0.01	1	0.0101	0.0202	CALD1->caldesmon_1,chr7:134429003-134655479:+,AKR1B15->aldo-keto_reductase_family_1,_member_B15,chr7:134233888-134264627:+	EN_ENDOMETRIUM	0.01	1	0.0303	FALSE	0	0	0	1	0	FALSE	ACH-000978
EN_ENDOMETRIUM	CALD1--AKR1B15	1	2	CALD1	3555	chr7:134464500:+	AKR1B15	47914	chr7:134264259:+	ONLY_REF_SPLICE	NO	241	0	0.01	1	0.0101	0.0202	CALD1->caldesmon_1,chr7:134429003-134655479:+,AKR1B15->aldo-keto_reductase_family_1,_member_B15,chr7:134233888-134264627:+	EN_ENDOMETRIUM	0.01	1	0.0303	FALSE	0	0	0	1	0	FALSE	ACH-000978
EN_ENDOMETRIUM	LYRM4--RPP40	1	2	LYRM4	4789	chr6:5216851:-	RPP40	24922	chr6:5002479:-	ONLY_REF_SPLICE	YES	96	71	0.03	0.04	0.0101	0.0202	NEIGHBORS[98530],LYRM4->LYR_motif_containing_4,chr6:5102827-5261172:-,RPP40->chr6:4994966-5004297:-,ribonuclease_P/MRP_subunit_p40	EN_ENDOMETRIUM	0.03	0.04	0.0303	FALSE	0	3	0	5	0	FALSE	ACH-000978
EN_ENDOMETRIUM	AC104532.2--CD37	1	1	AC104532.2	1241	chr19:5905092:+	CD37	7467	chr19:49840166:+	ONLY_REF_SPLICE	YES	2	9	0.5	0.18	0.0101	0.0101	AC104532.2->chr19:5904852-5914718:+,CD37->CD37_molecule,chr19:49838428-49846592:+	EN_ENDOMETRIUM	0.18	0.5	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000978
EN_ENDOMETRIUM	KDM1A--EPHB2	1	1	KDM1A	2666	chr1:23357127:+	EPHB2	31732	chr1:23189530:+	ONLY_REF_SPLICE	NO	93	47	0.02	0.04	0.0101	0.0101	KDM1A->chr1:23345941-23410182:+,lysine_demethylase_1A,EPHB2->EPH_receptor_B2,chr1:23037332-23241818:+	EN_ENDOMETRIUM	0.02	0.04	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000978
EN_ENDOMETRIUM	MAML2--CCDC82	1	1	MAML2	2798	chr11:96074547:-	CCDC82	21557	chr11:96116637:-	ONLY_REF_SPLICE	YES	30	101	0.06	0.02	0.0101	0.0101	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[9589],MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,CCDC82->chr11:96085933-96123087:-,coiled-coil_domain_containing_82	EN_ENDOMETRIUM	0.02	0.06	0.0202	TRUE	0	1	0	1	1	FALSE	ACH-000978
EN_ENDOMETRIUM	MCU--FAM149B1	1	1	MCU	1936	chr10:74452824:+	FAM149B1	29975	chr10:74987818:+	ONLY_REF_SPLICE	YES	32	15	0.06	0.12	0.0101	0.0101	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,FAM149B1->chr10:74927924-75004262:+,family_with_sequence_similarity_149_member_B1	EN_ENDOMETRIUM	0.06	0.12	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000978
EN_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0101	0.0101	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EN_ENDOMETRIUM	0.4	1	0.0202	FALSE	275	511	55	178	0	FALSE	ACH-000978
EN_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	3	2	0.4	0.5	0.0101	0.0101	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EN_ENDOMETRIUM	0.4	0.5	0.0202	FALSE	407	2205	196	549	0	FALSE	ACH-000978
EN_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	4	0.4	0.33	0.0101	0.0101	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EN_ENDOMETRIUM	0.33	0.4	0.0202	FALSE	515	4851	409	746	0	FALSE	ACH-000978
EN_ENDOMETRIUM	RP11-983P16.4--RANBP10	1	1	RP11-983P16.4	2043	chr12:53447180:-	RANBP10	24278	chr16:67768945:-	ONLY_REF_SPLICE	NO	7	23	0.22	0.08	0.0101	0.0101	RP11-983P16.4->chr12:53408380-53448222:-,RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-	EN_ENDOMETRIUM	0.08	0.22	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000978
S117_THYROID	TIMM23B--LINC00843	78	10	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7758	0.0995	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	S117_THYROID	1	1	0.8753	TRUE	508	994	45	981	0	FALSE	ACH-000037
S117_THYROID	TIMM23--RP11-464F9.1	50	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4973	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	S117_THYROID	1	1	0.4973	TRUE	519	3926	326	965	0	FALSE	ACH-000037
S117_THYROID	ASMTL--P2RY8	33	7	ASMTL	6526	chrX:1553915:-	P2RY8	21810	chrX:1585475:-	ONLY_REF_SPLICE	YES	15	0	0.73	1	0.3282	0.0696	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_EBV-transformed_lymphocytes=1,Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,NEIGHBORS[8810],ASMTL->acetylserotonin_O-methyltransferase-like,chrX:1522032-1572655:-,chrY:1472032-1522655:-,P2RY8->Oncogene{Bushman},chrX:1581465-1656000:-,chrY:1531465-1606000:-,purinergic_receptor_P2Y8	S117_THYROID	0.73	1	0.3978	FALSE	1	14	0	2	0	FALSE	ACH-000037
S117_THYROID	AP000525.9--LA16c-60G3.6	32	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3183	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	S117_THYROID	1	1	0.3183	TRUE	0	42	0	133	42	FALSE	ACH-000037
S117_THYROID	CTD-2314B22.3--RP11-536C10.19	30	0	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2984	0	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	S117_THYROID	1	1	0.2984	TRUE	0	2	0	9	2	TRUE	ACH-000037
S117_THYROID	COL1A1--COL7A1	17	2	COL1A1	15391	chr17:48264384:-	COL7A1	33641	chr3:48621185:-	INCL_NON_REF_SPLICE	NO	2978	79	0.01	0.19	0.1691	0.0199	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	S117_THYROID	0.01	0.19	0.189	FALSE	0	0	0	1	0	FALSE	ACH-000037
S117_THYROID	PTPRM--PTPN2	15	6	PTPRM	29056	chr18:8253412:+	PTPN2	51452	chr18:12929602:-	INCL_NON_REF_SPLICE	YES	56	0	0.27	1	0.1492	0.0597	GTEx&tcga_normals:1/3694=0.03%,PROTCLUST,PTPRM->chr18:7566780-8406859:+,protein_tyrosine_phosphatase,_receptor_type_M,PTPN2->chr18:12785477-12929642:-,protein_tyrosine_phosphatase,_non-receptor_type_2	S117_THYROID	0.27	1	0.2089	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	PLXDC1--TAF13	16	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1591	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	S117_THYROID	1	1	0.1591	TRUE	7	10	0	216	0	FALSE	ACH-000037
S117_THYROID	RP11-123O10.4--GRIP1	12	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1194	0.0099	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	S117_THYROID	1	1	0.1293	FALSE	416	2512	207	587	0	FALSE	ACH-000037
S117_THYROID	FTH1--ACTG1	10	2	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	4131	0	0	1	0.0995	0.0199	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	S117_THYROID	0	1	0.1194	TRUE	0	0	0	64	0	FALSE	ACH-000037
S117_THYROID	FTH1--ACTG1	9	2	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	4199	0	0	1	0.0895	0.0199	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	S117_THYROID	0	1	0.1094	TRUE	0	0	0	64	0	FALSE	ACH-000037
S117_THYROID	JUN--MT2A	8	0	JUN	2308	chr1:59248478:-	MT2A	7705	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0796	0	JUN->ArcherDX_panel,FoundationOne_panel,Jun_proto-oncogene,_AP-1_transcription_factor_subunit,Oncogene{Bushman},chr1:59246465-59249785:-,MT2A->chr16:56642111-56643409:+,metallothionein_2A	S117_THYROID	1	1	0.0796	TRUE	0	0	0	6	0	TRUE	ACH-000037
S117_THYROID	FAM168B--PGAP1	7	1	FAM168B	1247	chr2:131850787:-	PGAP1	17388	chr2:197784874:-	ONLY_REF_SPLICE	YES	98	3	0.08	0.73	0.0696	0.0099	FAM168B->chr2:131805449-131851033:-,family_with_sequence_similarity_168_member_B,PGAP1->chr2:197697728-197792520:-,post-GPI_attachment_to_proteins_1	S117_THYROID	0.08	0.73	0.0795	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	RP11-96H19.1--RP11-446N19.1	6	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0597	0.0199	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	S117_THYROID	0.89	1	0.0796	FALSE	515	4851	409	746	0	FALSE	ACH-000037
S117_THYROID	CFLAR--METTL21A	6	0	CFLAR	1378	chr2:201981204:+	METTL21A	41548	chr2:208489128:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0597	0	CFLAR->CASP8_and_FADD_like_apoptosis_regulator,Oncogene{Bushman},chr2:201980827-202041410:+,METTL21A->Oncogene{Bushman},chr2:208445355-208490652:-,methyltransferase_like_21A	S117_THYROID	1	1	0.0597	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	C15orf57--CBX3	5	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	9	27	0.47	0.23	0.0497	0.0298	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	S117_THYROID	0.23	0.47	0.0795	TRUE	267	562	48	632	0	FALSE	ACH-000037
S117_THYROID	PTPRM--PTPN2	5	2	PTPRM	29056	chr18:8253412:+	PTPN2	55213	chr18:12859253:-	ONLY_REF_SPLICE	YES	56	77	0.11	0.08	0.0497	0.0199	GTEx&tcga_normals:1/3694=0.03%,PROTCLUST,PTPRM->chr18:7566780-8406859:+,protein_tyrosine_phosphatase,_receptor_type_M,PTPN2->chr18:12785477-12929642:-,protein_tyrosine_phosphatase,_non-receptor_type_2	S117_THYROID	0.08	0.11	0.0696	TRUE	0	0	0	1	0	FALSE	ACH-000037
S117_THYROID	COL1A1--COL7A1	5	1	COL1A1	11863	chr17:48267912:-	COL7A1	50373	chr3:48604160:-	INCL_NON_REF_SPLICE	NO	3557	116	0	0.05	0.0497	0.0099	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	S117_THYROID	0	0.05	0.0596	FALSE	0	0	0	2	0	FALSE	ACH-000037
S117_THYROID	MYH9--MT2A	4	4	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	1183	5	0.01	0.62	0.0398	0.0398	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	S117_THYROID	0.01	0.62	0.0796	FALSE	0	0	0	24	0	FALSE	ACH-000037
S117_THYROID	C15orf57--CBX3	4	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	8	27	0.47	0.21	0.0398	0.0298	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	S117_THYROID	0.21	0.47	0.0696	TRUE	267	562	48	632	0	FALSE	ACH-000037
S117_THYROID	TENM4--AUTS2	4	3	TENM4	7069	chr11:78926853:-	AUTS2	70166	chr7:69755354:+	ONLY_REF_SPLICE	YES	7	3	0.5	0.7	0.0398	0.0298	TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4,AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+	S117_THYROID	0.5	0.7	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	COL1A1--NPM1	4	2	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	2992	1	0	0.86	0.0398	0.0199	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	S117_THYROID	0	0.86	0.0597	FALSE	0	0	0	31	0	FALSE	ACH-000037
S117_THYROID	FAM171B--ITGAV	4	1	FAM171B	1441	chr2:187559138:+	ITGAV	18698	chr2:187466748:+	ONLY_REF_SPLICE	YES	2	31	0.71	0.14	0.0398	0.0099	LOCAL_REARRANGEMENT:+:[13070],FAM171B->chr2:187558698-187630685:+,family_with_sequence_similarity_171_member_B,ITGAV->chr2:187454792-187545628:+,integrin_subunit_alpha_V	S117_THYROID	0.14	0.71	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0.0497	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	S117_THYROID	1	1	0.0795	FALSE	467	2173	244	435	0	FALSE	ACH-000037
S117_THYROID	CTD-2337A12.1--CAST	4	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0398	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	S117_THYROID	1	1	0.0398	TRUE	347	1186	183	220	0	FALSE	ACH-000037
S117_THYROID	RP11-680G10.1--GSE1	3	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.78	0.0298	0.0398	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	S117_THYROID	0.78	1	0.0696	TRUE	458	1351	185	561	0	FALSE	ACH-000037
S117_THYROID	TENM4--AUTS2	3	4	TENM4	8166	chr11:78859755:-	AUTS2	70166	chr7:69755354:+	ONLY_REF_SPLICE	YES	6	3	0.54	0.7	0.0298	0.0398	TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4,AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+	S117_THYROID	0.54	0.7	0.0696	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	RP11-634B7.4--TRIM58	3	3	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	22	1	0.21	0.0298	0.0298	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	S117_THYROID	0.21	1	0.0596	TRUE	158	633	76	73	0	FALSE	ACH-000037
S117_THYROID	COL1A1--COL7A1	3	1	COL1A1	13884	chr17:48265891:-	COL7A1	50537	chr3:48603996:-	ONLY_REF_SPLICE	NO	3413	100	0	0.04	0.0298	0.0099	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	S117_THYROID	0	0.04	0.0397	FALSE	0	0	0	2	0	FALSE	ACH-000037
S117_THYROID	FTH1--ACTG1	3	1	FTH1	1252	chr11:61734881:-	ACTG1	11013	chr17:79479363:-	INCL_NON_REF_SPLICE	YES	4503	171	0	0.02	0.0298	0.0099	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	S117_THYROID	0	0.02	0.0397	FALSE	0	0	0	64	0	FALSE	ACH-000037
S117_THYROID	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	3590	chr22:16189032:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	S117_THYROID	1	1	0.0298	TRUE	0	0	0	3	0	TRUE	ACH-000037
S117_THYROID	RP1-34H18.1--NAV3	2	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0199	0.0099	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	S117_THYROID	0.75	1	0.0298	TRUE	254	575	65	124	0	FALSE	ACH-000037
S117_THYROID	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	10	1	0.23	0.0199	0.0099	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	S117_THYROID	0.23	1	0.0298	TRUE	465	1949	224	605	0	FALSE	ACH-000037
S117_THYROID	TENM4--AUTS2	2	1	TENM4	7069	chr11:78926853:-	AUTS2	72551	chr7:69900738:+	ONLY_REF_SPLICE	YES	7	3	0.3	0.5	0.0199	0.0099	TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4,AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+	S117_THYROID	0.3	0.5	0.0298	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	ADAMTSL1--IFT80	2	0	ADAMTSL1	3576	chr9:18533290:+	IFT80	62840	chr3:160037727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	ADAMTSL1->ADAMTS_like_1,chr9:18473892-18910948:+,IFT80->chr3:159974774-160117668:-,intraflagellar_transport_80	S117_THYROID	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	BNC2--C9orf92	2	0	BNC2	9814	chr9:16552528:-	C9orf92	33426	chr9:16215897:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_FI:{Esophagus=[count:2=pct:0.5],Lung=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},BNC2->basonuclin_2,chr9:16409501-16870841:-,C9orf92->chr9:16203933-16276311:-,chromosome_9_open_reading_frame_92	S117_THYROID	1	1	0.0199	TRUE	3	8	0	3	0	FALSE	ACH-000037
S117_THYROID	CDC42--HP1BP3	2	0	CDC42	6887	chr1:22413359:+	HP1BP3	22058	chr1:21097566:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	S117_THYROID	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	NRAS--CSDE1	2	0	NRAS	3024	chr1:115256421:-	CSDE1	32167	chr1:115263338:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LOCAL_REARRANGEMENT:-:[19],NRAS->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr1:115247090-115259515:-,neuroblastoma_RAS_viral_oncogene_homolog,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	S117_THYROID	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	RP11-400N13.3--RP11-191N8.2	2	0	RP11-400N13.3	2344	chr1:222231756:-	RP11-191N8.2	6776	chr1:222013795:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	RP11-400N13.3->chr1:222215047-222238105:-,RP11-191N8.2->chr1:222001008-222014008:-	S117_THYROID	1	1	0.0199	TRUE	0	16	0	2	11	TRUE	ACH-000037
S117_THYROID	ZFP90--ANKLE2	2	0	ZFP90	2603	chr16:68567758:+	ANKLE2	24894	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	ZFP90->ZFP90_zinc_finger_protein,chr16:68563993-68609975:+,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	S117_THYROID	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0099	0.0298	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	S117_THYROID	0.8	1	0.0397	FALSE	407	2205	196	549	0	FALSE	ACH-000037
S117_THYROID	COL1A1--COL7A1	1	2	COL1A1	11871	chr17:48267904:-	COL7A1	40665	chr3:48613868:-	ONLY_REF_SPLICE	NO	4169	179	0	0.02	0.0099	0.0199	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	S117_THYROID	0	0.02	0.0298	FALSE	0	0	0	1	0	FALSE	ACH-000037
S117_THYROID	COL1A1--COL7A1	1	2	COL1A1	13672	chr17:48266103:-	COL7A1	49910	chr3:48604623:-	ONLY_REF_SPLICE	NO	2645	124	0	0.02	0.0099	0.0199	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL7A1->Oncogene{Bushman},chr3:48601506-48632700:-,collagen_type_VII_alpha_1	S117_THYROID	0	0.02	0.0298	FALSE	0	0	0	2	0	FALSE	ACH-000037
S117_THYROID	AGRN--NCOR2	1	1	AGRN	16807	chr1:987195:+	NCOR2	51851	chr12:124848345:-	ONLY_REF_SPLICE	YES	181	191	0.01	0.01	0.0099	0.0099	AGRN->agrin,chr1:955503-991496:+,NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2	S117_THYROID	0.01	0.01	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000037
S117_THYROID	H2AFZ--HDDC2	1	1	H2AFZ	1726	chr4:100870820:-	HDDC2	7592	chr6:125621805:-	ONLY_REF_SPLICE	NO	1291	138	0	0.01	0.0099	0.0099	H2AFZ->H2A_histone_family_member_Z,chr4:100869243-100871545:-,HDDC2->HD_domain_containing_2,chr6:125541108-125623282:-	S117_THYROID	0	0.01	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000037
S117_THYROID	TENM4--AUTS2	1	1	TENM4	8166	chr11:78859755:-	AUTS2	72551	chr7:69900738:+	ONLY_REF_SPLICE	YES	6	3	0.25	0.4	0.0099	0.0099	TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4,AUTS2->autism_susceptibility_candidate_2,chr7:69063905-70258054:+	S117_THYROID	0.25	0.4	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000037
S117_THYROID	TPM1--TSNAX	1	1	TPM1	2521	chr15:63336351:+	TSNAX	21792	chr1:231665001:+	ONLY_REF_SPLICE	YES	1342	88	0	0.02	0.0099	0.0099	TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha),TSNAX->chr1:231664399-231702270:+,translin-associated_factor_X	S117_THYROID	0	0.02	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000037
HOP62_LUNG	TIMM23B--LINC00843	88	40	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.031	0.4687	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HOP62_LUNG	1	1	1.4997	TRUE	508	994	45	981	0	FALSE	ACH-000861
HOP62_LUNG	CFL1--RP11-480C22.1	49	38	CFL1	2955	chr11:65626702:-	RP11-480C22.1	17058	chr11:127204919:+	ONLY_REF_SPLICE	YES	8	0	0.92	1	0.5741	0.4452	CFL1->chr11:65590493-65629497:-,cofilin_1,RP11-480C22.1->chr11:127140957-127206928:+	HOP62_LUNG	0.92	1	1.0193	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	TIMM23--RP11-464F9.1	52	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	367	6	0.13	0.9	0.6093	0.0586	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HOP62_LUNG	0.13	0.9	0.6679	TRUE	519	3926	326	965	0	FALSE	ACH-000861
HOP62_LUNG	GRAMD4--ATXN10	50	4	GRAMD4	2229	chr22:46973187:+	ATXN10	36048	chr22:46134611:+	ONLY_REF_SPLICE	YES	0	668	1	0.07	0.5858	0.0469	GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+,ATXN10->ataxin_10,chr22:46067678-46241187:+	HOP62_LUNG	0.07	1	0.6327	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	MEF2D--IQGAP3	45	9	MEF2D	1343	chr1:156470278:-	IQGAP3	36742	chr1:156510708:-	ONLY_REF_SPLICE	YES	10	84	0.84	0.39	0.5272	0.1054	LOCAL_REARRANGEMENT:-:[24577],MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,IQGAP3->IQ_motif_containing_GTPase_activating_protein_3,chr1:156495197-156542396:-	HOP62_LUNG	0.39	0.84	0.6326	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	CFL1--RP11-480C22.1	31	40	CFL1	2969	chr11:65626688:-	RP11-480C22.1	17058	chr11:127204919:+	INCL_NON_REF_SPLICE	YES	8	0	0.9	1	0.3632	0.4687	CFL1->chr11:65590493-65629497:-,cofilin_1,RP11-480C22.1->chr11:127140957-127206928:+	HOP62_LUNG	0.9	1	0.8319	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	ZNF654--HMGB2	33	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3866	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HOP62_LUNG	1	1	0.3866	TRUE	0	0	0	518	0	FALSE	ACH-000861
HOP62_LUNG	ENOSF1--TEF	25	19	ENOSF1	13377	chr18:683246:-	TEF	28612	chr22:41783355:+	ONLY_REF_SPLICE	YES	184	10	0.19	0.81	0.2929	0.2226	ENOSF1->chr18:670324-712676:-,enolase_superfamily_member_1,TEF->TEF,_PAR_bZIP_transcription_factor,chr22:41763337-41795330:+	HOP62_LUNG	0.19	0.81	0.5155	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	MT-TA--MT-TC	27	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3163	0.0117	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HOP62_LUNG	1	1	0.328	FALSE	462	80	0	856	0	FALSE	ACH-000861
HOP62_LUNG	C15orf57--CBX3	18	24	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	59	69	0.42	0.38	0.2109	0.2812	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HOP62_LUNG	0.38	0.42	0.4921	TRUE	267	562	48	632	0	FALSE	ACH-000861
HOP62_LUNG	NUP85--SUMO2	18	1	NUP85	1136	chr17:73201889:+	SUMO2	23389	chr17:73177283:-	ONLY_REF_SPLICE	YES	30	1963	0.39	0.01	0.2109	0.0117	{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[22676],NUP85->chr17:73201754-73231853:+,nucleoporin_85,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	HOP62_LUNG	0.01	0.39	0.2226	TRUE	0	0	0	1	0	FALSE	ACH-000861
HOP62_LUNG	RP11-680G10.1--GSE1	16	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	26	1	0.46	0.1875	0.0703	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HOP62_LUNG	0.46	1	0.2578	TRUE	465	1949	224	605	0	FALSE	ACH-000861
HOP62_LUNG	MEF2D--IQGAP3	12	13	MEF2D	2397	chr1:156469224:-	IQGAP3	36742	chr1:156510708:-	ONLY_REF_SPLICE	YES	17	84	0.6	0.23	0.1406	0.1523	LOCAL_REARRANGEMENT:-:[24577],MEF2D->Oncogene{Bushman},chr1:156433519-156470620:-,myocyte_enhancer_factor_2D,IQGAP3->IQ_motif_containing_GTPase_activating_protein_3,chr1:156495197-156542396:-	HOP62_LUNG	0.23	0.6	0.2929	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	OR51S1--TP53I11	13	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1523	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HOP62_LUNG	1	1	0.1523	TRUE	402	216	10	229	0	FALSE	ACH-000861
HOP62_LUNG	C15orf57--CBX3	8	18	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	58	71	0.31	0.27	0.0937	0.2109	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HOP62_LUNG	0.27	0.31	0.3046	TRUE	267	562	48	632	0	FALSE	ACH-000861
HOP62_LUNG	PKM--PPIA	10	3	PKM	16758	chr15:72494872:-	PPIA	23273	chr7:44836291:+	INCL_NON_REF_SPLICE	YES	6186	0	0	1	0.1172	0.0351	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	HOP62_LUNG	0	1	0.1523	TRUE	0	0	0	18	0	FALSE	ACH-000861
HOP62_LUNG	MT-ND4--MT-ATP8	10	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13036	13	0	0.48	0.1172	0.0234	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP62_LUNG	0	0.48	0.1406	FALSE	230	198	14	283	0	FALSE	ACH-000861
HOP62_LUNG	SYNE2--ESR2	10	2	SYNE2	99731	chr14:64626160:+	ESR2	154348	chr14:64716397:-	ONLY_REF_SPLICE	YES	22	0	0.35	1	0.1172	0.0234	SYNE2->Oncogene{Bushman},chr14:64319683-64693165:+,spectrin_repeat_containing_nuclear_envelope_protein_2,ESR2->Oncogene{Bushman},chr14:64550950-64804830:-,estrogen_receptor_2	HOP62_LUNG	0.35	1	0.1406	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	RP11-96H19.1--RP11-446N19.1	8	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.0937	0.0586	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HOP62_LUNG	0.76	1	0.1523	FALSE	515	4851	409	746	0	FALSE	ACH-000861
HOP62_LUNG	MT-ND4--MT-ATP8	8	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	12928	11	0	0.48	0.0937	0.0234	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP62_LUNG	0	0.48	0.1171	FALSE	230	193	14	283	0	FALSE	ACH-000861
HOP62_LUNG	HSP90AB1--MT-RNR2	8	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	5638	0	0	1	0.0937	0.0117	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOP62_LUNG	0	1	0.1054	FALSE	13	9	0	364	0	FALSE	ACH-000861
HOP62_LUNG	AP000525.9--LA16c-60G3.6	7	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.082	0.0117	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HOP62_LUNG	1	1	0.0937	TRUE	0	42	0	133	42	FALSE	ACH-000861
HOP62_LUNG	XXbac-BPG252P9.9--TUBBP2	7	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.082	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HOP62_LUNG	1	1	0.082	TRUE	0	1	0	48	1	FALSE	ACH-000861
HOP62_LUNG	MT-ND1--MT-RNR2	6	3	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	43	0	0.17	1	0.0703	0.0351	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOP62_LUNG	0.17	1	0.1054	FALSE	114	26	4	85	0	FALSE	ACH-000861
HOP62_LUNG	MT-ND4--MT-ATP8	5	7	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	16553	1403	0	0.01	0.0586	0.082	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP62_LUNG	0	0.01	0.1406	FALSE	231	217	16	283	0	FALSE	ACH-000861
HOP62_LUNG	RP11-680G10.1--GSE1	4	11	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.88	0.0469	0.1289	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HOP62_LUNG	0.88	1	0.1758	TRUE	458	1351	185	561	0	FALSE	ACH-000861
HOP62_LUNG	MT-ND4--MT-ATP8	6	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12928	13	0	0.38	0.0703	0.0234	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP62_LUNG	0	0.38	0.0937	FALSE	230	193	14	283	0	FALSE	ACH-000861
HOP62_LUNG	CFL1--RP11-480C22.1	6	0	CFL1	1770	chr11:65628728:-	RP11-480C22.1	17058	chr11:127204919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0703	0	CFL1->chr11:65590493-65629497:-,cofilin_1,RP11-480C22.1->chr11:127140957-127206928:+	HOP62_LUNG	1	1	0.0703	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	MT-ND4--MT-ATP8	3	12	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	16829	0	0	1	0.0351	0.1406	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP62_LUNG	0	1	0.1757	FALSE	231	217	16	283	0	FALSE	ACH-000861
HOP62_LUNG	XXbac-BPG252P9.9--TUBBP2	6	0	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HOP62_LUNG	1	1	0.0703	TRUE	0	1	0	48	1	FALSE	ACH-000861
HOP62_LUNG	MT-ATP6--MT-CO1	5	2	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2493	22909	0	0	0.0586	0.0234	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOP62_LUNG	0	0	0.082	FALSE	183	104	9	328	0	FALSE	ACH-000861
HOP62_LUNG	RP11-96H19.1--RP11-446N19.1	4	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0469	0.0703	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HOP62_LUNG	0.83	1	0.1172	FALSE	467	2173	244	435	0	FALSE	ACH-000861
HOP62_LUNG	MT-ATP6--MT-CO1	5	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	7866	21852	0	0	0.0586	0.0117	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOP62_LUNG	0	0	0.0703	FALSE	183	104	9	328	0	FALSE	ACH-000861
HOP62_LUNG	MT-ND4--MT-ATP8	3	9	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18623	0	0	1	0.0351	0.1054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP62_LUNG	0	1	0.1405	FALSE	231	217	16	283	0	FALSE	ACH-000861
HOP62_LUNG	MT-ND4--MT-ATP8	3	9	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	16943	13	0	0.48	0.0351	0.1054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP62_LUNG	0	0.48	0.1405	FALSE	231	217	16	283	0	FALSE	ACH-000861
HOP62_LUNG	MT-ND4--MT-ATP8	3	9	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	18644	0	0	1	0.0351	0.1054	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP62_LUNG	0	1	0.1405	FALSE	231	217	16	283	0	FALSE	ACH-000861
HOP62_LUNG	RNF13--C12orf50	5	1	RNF13	1646	chr3:149531140:+	C12orf50	25428	chr12:88391967:-	ONLY_REF_SPLICE	YES	66	0	0.08	1	0.0586	0.0117	RNF13->chr3:149530495-149679926:+,ring_finger_protein_13,C12orf50->chr12:88373816-88427814:-,chromosome_12_open_reading_frame_50	HOP62_LUNG	0.08	1	0.0703	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	RP4-565E6.1--HYDIN	5	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	3	1	0.67	0.0586	0.0117	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HOP62_LUNG	0.67	1	0.0703	TRUE	456	1387	91	133	0	FALSE	ACH-000861
HOP62_LUNG	MT-ND1--MT-RNR2	4	3	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	39	6539	0.15	0	0.0469	0.0351	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOP62_LUNG	0	0.15	0.082	FALSE	120	26	5	87	0	FALSE	ACH-000861
HOP62_LUNG	RP11-634B7.4--TRIM58	4	3	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	17	1	0.29	0.0469	0.0351	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	HOP62_LUNG	0.29	1	0.082	TRUE	158	633	76	73	0	FALSE	ACH-000861
HOP62_LUNG	ESR2--SYNE2	4	2	ESR2	15616	chr14:64716264:-	SYNE2	157225	chr14:64685926:+	ONLY_REF_SPLICE	YES	0	47	1	0.11	0.0469	0.0234	ESR2->Oncogene{Bushman},chr14:64550950-64804830:-,estrogen_receptor_2,SYNE2->Oncogene{Bushman},chr14:64319683-64693165:+,spectrin_repeat_containing_nuclear_envelope_protein_2	HOP62_LUNG	0.11	1	0.0703	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	NPM1P24--SET	4	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	48	1434	0.09	0	0.0469	0.0117	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HOP62_LUNG	0	0.09	0.0586	FALSE	0	0	0	434	0	FALSE	ACH-000861
HOP62_LUNG	NPM1P24--SET	4	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	48	1302	0.09	0	0.0469	0.0117	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HOP62_LUNG	0	0.09	0.0586	FALSE	0	0	0	434	0	FALSE	ACH-000861
HOP62_LUNG	RP11-123O10.4--GRIP1	4	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0469	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HOP62_LUNG	1	1	0.0469	FALSE	416	2512	207	587	0	FALSE	ACH-000861
HOP62_LUNG	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1184	chr6:30691471:-	TUBBP2	4919	chr13:41959174:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HOP62_LUNG	1	1	0.0469	TRUE	0	1	0	48	1	FALSE	ACH-000861
HOP62_LUNG	RP11-96H19.1--RP11-446N19.1	2	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0234	0.082	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HOP62_LUNG	0.82	1	0.1054	FALSE	192	492	57	212	0	FALSE	ACH-000861
HOP62_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9476	22318	0	0	0.0351	0.0234	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOP62_LUNG	0	0	0.0585	FALSE	183	104	9	328	0	FALSE	ACH-000861
HOP62_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	12950	0	0	1	0.0351	0.0234	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP62_LUNG	0	1	0.0585	FALSE	230	197	14	283	0	FALSE	ACH-000861
HOP62_LUNG	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	5684	0	0	1	0.0351	0.0117	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HOP62_LUNG	0	1	0.0468	FALSE	13	9	0	364	0	FALSE	ACH-000861
HOP62_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7935	22596	0	0	0.0351	0.0117	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOP62_LUNG	0	0	0.0468	FALSE	183	104	9	328	0	FALSE	ACH-000861
HOP62_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	13113	86	0	0.04	0.0351	0.0117	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP62_LUNG	0	0.04	0.0468	FALSE	231	204	14	283	0	FALSE	ACH-000861
HOP62_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	13036	63	0	0.06	0.0351	0.0117	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HOP62_LUNG	0	0.06	0.0468	FALSE	230	198	14	283	0	FALSE	ACH-000861
HOP62_LUNG	RP11-444D3.1--SOX5	3	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0.0117	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HOP62_LUNG	1	1	0.0468	TRUE	477	1352	189	275	0	FALSE	ACH-000861
HOP62_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1444	chrM:8970:+	MT-CO1	5887	chrM:7109:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HOP62_LUNG	1	1	0.0351	FALSE	183	104	9	328	0	FALSE	ACH-000861
HOP62_LUNG	MYH9--MT2A	3	0	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HOP62_LUNG	1	1	0.0351	TRUE	0	0	0	24	0	FALSE	ACH-000861
HOP62_LUNG	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HOP62_LUNG	1	1	0.0351	TRUE	0	0	0	434	0	FALSE	ACH-000861
HOP62_LUNG	RP11-120D5.1--MID1	3	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HOP62_LUNG	1	1	0.0351	FALSE	16	356	14	466	0	FALSE	ACH-000861
HOP62_LUNG	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1083	chr6:30691572:-	TUBBP2	4900	chr13:41959193:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HOP62_LUNG	1	1	0.0351	TRUE	0	1	0	48	1	FALSE	ACH-000861
HOP62_LUNG	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1068	chr6:30691587:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HOP62_LUNG	1	1	0.0351	TRUE	0	1	0	48	1	FALSE	ACH-000861
HOP62_LUNG	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1137	chr6:30691518:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HOP62_LUNG	1	1	0.0351	TRUE	0	1	0	48	1	FALSE	ACH-000861
HOP62_LUNG	RPSAP52--HMGA2	2	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	22	176	0.12	0.02	0.0234	0.0117	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HOP62_LUNG	0.02	0.12	0.0351	FALSE	0	59	0	125	0	FALSE	ACH-000861
HOP62_LUNG	AHCYL1--RERE	2	0	AHCYL1	1487	chr1:110527794:+	RERE	24814	chr1:8716500:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	AHCYL1->adenosylhomocysteinase_like_1,chr1:110527308-110566357:+,RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-	HOP62_LUNG	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HOP62_LUNG	1	1	0.0234	TRUE	347	1186	183	220	0	FALSE	ACH-000861
HOP62_LUNG	NCOR2--UBC	2	0	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HOP62_LUNG	1	1	0.0234	TRUE	52	148	13	33	0	FALSE	ACH-000861
HOP62_LUNG	PRKCH--HIF1A	2	0	PRKCH	27174	chr14:61952374:+	HIF1A	45882	chr14:62187100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	HOP62_LUNG	1	1	0.0234	TRUE	0	3	0	5	0	TRUE	ACH-000861
HOP62_LUNG	SCP2--BUB1	2	0	SCP2	13329	chr1:53453808:+	BUB1	50190	chr2:111399811:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	SCP2->chr1:53392901-53517375:+,sterol_carrier_protein_2,BUB1->BUB1_mitotic_checkpoint_serine/threonine_kinase,Oncogene{Bushman},chr2:111395275-111435691:-	HOP62_LUNG	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000861
HOP62_LUNG	KCNQ5-IT1--KCNQ5	1	1	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	13	1	0.13	0.0117	0.0117	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	HOP62_LUNG	0.13	1	0.0234	FALSE	1	11	0	34	0	FALSE	ACH-000861
HOP62_LUNG	NDUFA4--PHF14	1	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	NO	1441	86	0	0.02	0.0117	0.0117	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HOP62_LUNG	0	0.02	0.0234	FALSE	19	32	3	60	0	FALSE	ACH-000861
HOP62_LUNG	NDUFV3--PCBP1-AS1	1	1	NDUFV3	5809	chr21:44317157:+	PCBP1-AS1	19568	chr2:70312756:-	ONLY_REF_SPLICE	YES	240	21	0.01	0.09	0.0117	0.0117	NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-	HOP62_LUNG	0.01	0.09	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000861
HOP62_LUNG	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0117	0.0117	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HOP62_LUNG	1	1	0.0234	FALSE	81	155	12	160	0	FALSE	ACH-000861
HOP62_LUNG	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0117	0.0117	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HOP62_LUNG	1	1	0.0234	TRUE	160	277	29	98	0	FALSE	ACH-000861
HOP62_LUNG	RP11-818F20.5--TXNRD1	1	1	RP11-818F20.5	1439	chr12:104674062:-	TXNRD1	29785	chr12:104725312:+	ONLY_REF_SPLICE	YES	72	3338	0.03	0	0.0117	0.0117	NEIGHBORS_OVERLAP:-:+:[18408],RP11-818F20.5->chr12:104656092-104674500:-,TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1	HOP62_LUNG	0	0.03	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000861
HOP62_LUNG	SLC16A3--RPL3	1	1	SLC16A3	9982	chr17:80195581:+	RPL3	17361	chr22:39715628:-	ONLY_REF_SPLICE	YES	1446	6	0	0.25	0.0117	0.0117	SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3,RPL3->chr22:39708887-39716394:-,ribosomal_protein_L3	HOP62_LUNG	0	0.25	0.0234	FALSE	0	0	0	2	0	FALSE	ACH-000861
IMR32_AUTONOMIC_GANGLIA	ANTXR1--AC011897.2	1964	559	ANTXR1	19545	chr2:69397421:+	AC011897.2	31797	chr2:14756552:+	ONLY_REF_SPLICE	YES	126	0	0.95	1	22.9051	6.5193	ANTXR1->anthrax_toxin_receptor_1,chr2:69240310-69476459:+,AC011897.2->chr2:14756552-14770316:+	IMR32_AUTONOMIC_GANGLIA	0.95	1	29.4244	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	KANSL1--ARL17B	224	134	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	96	108	0.79	0.77	2.6124	1.5628	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	IMR32_AUTONOMIC_GANGLIA	0.77	0.79	4.1752	TRUE	181	1564	124	196	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	DDX1--AC068286.1	125	98	DDX1	11293	chr2:15747437:+	AC068286.1	26859	chr2:15030919:-	ONLY_REF_SPLICE	YES	9149	0	0.02	1	1.4578	1.1429	DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+,AC068286.1->chr2:15026771-15047788:-	IMR32_AUTONOMIC_GANGLIA	0.02	1	2.6007	TRUE	0	0	0	1	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	123	36	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4345	0.4198	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	IMR32_AUTONOMIC_GANGLIA	1	1	1.8543	TRUE	508	994	45	981	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	ANTXR1--AC011897.2	1	439	ANTXR1	18503	chr2:69379396:+	AC011897.2	31797	chr2:14756552:+	ONLY_REF_SPLICE	YES	203	0	0.68	1	0.0117	5.1198	ANTXR1->anthrax_toxin_receptor_1,chr2:69240310-69476459:+,AC011897.2->chr2:14756552-14770316:+	IMR32_AUTONOMIC_GANGLIA	0.68	1	5.1315	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	67	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	205	5	0.25	0.93	0.7814	0.035	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	IMR32_AUTONOMIC_GANGLIA	0.25	0.93	0.8164	TRUE	519	3926	326	965	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	ZNF654--HMGB2	66	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7697	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	IMR32_AUTONOMIC_GANGLIA	1	1	0.7697	TRUE	0	0	0	518	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	ANTXR1--AC011897.2	1	217	ANTXR1	19545	chr2:69397421:+	AC011897.2	32855	chr2:14768727:+	ONLY_REF_SPLICE	YES	126	0	0.63	1	0.0117	2.5308	ANTXR1->anthrax_toxin_receptor_1,chr2:69240310-69476459:+,AC011897.2->chr2:14756552-14770316:+	IMR32_AUTONOMIC_GANGLIA	0.63	1	2.5425	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	OR51S1--TP53I11	47	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5481	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	IMR32_AUTONOMIC_GANGLIA	1	1	0.5481	TRUE	402	216	10	229	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	DDX1--AC068286.1	30	65	DDX1	11293	chr2:15747437:+	AC068286.1	27001	chr2:15030777:-	INCL_NON_REF_SPLICE	YES	9149	15	0.01	0.86	0.3499	0.7581	DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+,AC068286.1->chr2:15026771-15047788:-	IMR32_AUTONOMIC_GANGLIA	0.01	0.86	1.108	TRUE	0	0	0	1	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	ANTXR1--AC011897.2	3	169	ANTXR1	19545	chr2:69397421:+	AC011897.2	33937	chr2:14770111:+	ONLY_REF_SPLICE	YES	126	22	0.58	0.89	0.035	1.971	ANTXR1->anthrax_toxin_receptor_1,chr2:69240310-69476459:+,AC011897.2->chr2:14756552-14770316:+	IMR32_AUTONOMIC_GANGLIA	0.58	0.89	2.006	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	DDX1--AC068286.1	36	27	DDX1	11293	chr2:15747437:+	AC068286.1	28126	chr2:15026878:-	ONLY_REF_SPLICE	YES	9149	8	0.01	0.89	0.4198	0.3149	DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+,AC068286.1->chr2:15026771-15047788:-	IMR32_AUTONOMIC_GANGLIA	0.01	0.89	0.7347	TRUE	0	0	0	1	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	DDX1--AC068286.1	25	64	DDX1	11293	chr2:15747437:+	AC068286.1	27004	chr2:15030774:-	INCL_NON_REF_SPLICE	YES	9149	16	0.01	0.85	0.2916	0.7464	DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+,AC068286.1->chr2:15026771-15047788:-	IMR32_AUTONOMIC_GANGLIA	0.01	0.85	1.038	TRUE	0	0	0	1	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	RP11-123O10.4--GRIP1	33	10	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3849	0.1166	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	IMR32_AUTONOMIC_GANGLIA	1	1	0.5015	FALSE	416	2512	207	587	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-TA--MT-TC	33	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3849	0.035	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IMR32_AUTONOMIC_GANGLIA	1	1	0.4199	FALSE	462	80	0	856	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	NFIA--AC097374.2	21	10	NFIA	1208	chr1:61331138:+	AC097374.2	32271	chr2:95601119:-	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.2449	0.1166	NFIA->chr1:61330931-61928465:+,nuclear_factor_I_A,AC097374.2->chr2:95533231-95613086:-	IMR32_AUTONOMIC_GANGLIA	0.94	1	0.3615	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	NPM1P24--SET	18	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2099	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	IMR32_AUTONOMIC_GANGLIA	1	1	0.2099	TRUE	0	0	0	434	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	17	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1983	0.0233	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IMR32_AUTONOMIC_GANGLIA	1	1	0.2216	FALSE	499	1288	110	792	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	KANSL1--ARL17B	6	36	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	120	108	0.26	0.28	0.07	0.4198	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	IMR32_AUTONOMIC_GANGLIA	0.26	0.28	0.4898	TRUE	105	90	7	93	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	10	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1166	0.1399	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IMR32_AUTONOMIC_GANGLIA	0.96	1	0.2565	FALSE	499	1288	110	792	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	12	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1399	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	IMR32_AUTONOMIC_GANGLIA	1	1	0.1399	FALSE	292	1546	117	613	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	11	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1283	0.0233	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IMR32_AUTONOMIC_GANGLIA	1	1	0.1516	FALSE	499	1288	110	792	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	10	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4479	0	0	1	0.1166	0.0233	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IMR32_AUTONOMIC_GANGLIA	0	1	0.1399	FALSE	13	9	0	364	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO2	10	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	29	11	0.29	0.52	0.1166	0.0233	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IMR32_AUTONOMIC_GANGLIA	0.29	0.52	0.1399	FALSE	59	21	0	114	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	DDX1--AC068286.1	4	24	DDX1	10244	chr2:15746388:+	AC068286.1	27001	chr2:15030777:-	INCL_NON_REF_SPLICE	YES	10000	15	0	0.65	0.0466	0.2799	DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+,AC068286.1->chr2:15026771-15047788:-	IMR32_AUTONOMIC_GANGLIA	0	0.65	0.3265	TRUE	0	0	0	1	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	DDX1--AC068286.1	1	33	DDX1	10244	chr2:15746388:+	AC068286.1	26859	chr2:15030919:-	ONLY_REF_SPLICE	NO	10000	0	0	1	0.0117	0.3849	DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+,AC068286.1->chr2:15026771-15047788:-	IMR32_AUTONOMIC_GANGLIA	0	1	0.3966	TRUE	0	0	0	1	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	RP11-408A13.2--NFIB	8	4	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	128	1	0.09	0.0933	0.0466	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	IMR32_AUTONOMIC_GANGLIA	0.09	1	0.1399	TRUE	0	14	0	20	14	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO2	8	0	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0933	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IMR32_AUTONOMIC_GANGLIA	1	1	0.0933	FALSE	59	21	0	114	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	8	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0933	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	IMR32_AUTONOMIC_GANGLIA	1	1	0.0933	FALSE	189	492	56	216	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	WWP2--STARD9	7	3	WWP2	5832	chr16:69820983:+	STARD9	42593	chr15:42927054:+	ONLY_REF_SPLICE	YES	6	8	0.62	0.56	0.0816	0.035	WWP2->WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr16:69796209-69975644:+,STARD9->StAR_related_lipid_transfer_domain_containing_9,chr15:42867857-43013179:+	IMR32_AUTONOMIC_GANGLIA	0.56	0.62	0.1166	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO2	7	1	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	24	9	0.25	0.47	0.0816	0.0117	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IMR32_AUTONOMIC_GANGLIA	0.25	0.47	0.0933	FALSE	59	21	0	114	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0816	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IMR32_AUTONOMIC_GANGLIA	1	1	0.0816	FALSE	462	80	0	856	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	6	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.31	1	0.07	0.0233	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	IMR32_AUTONOMIC_GANGLIA	0.31	1	0.0933	FALSE	125	705	46	456	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0.1516	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IMR32_AUTONOMIC_GANGLIA	1	1	0.1866	FALSE	499	1288	110	792	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-TA--MT-TC	5	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0.035	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IMR32_AUTONOMIC_GANGLIA	1	1	0.0933	FALSE	462	80	0	856	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	NFIA--AC097374.2	3	9	NFIA	1208	chr1:61331138:+	AC097374.2	33330	chr2:95598736:-	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.035	0.105	NFIA->chr1:61330931-61928465:+,nuclear_factor_I_A,AC097374.2->chr2:95533231-95613086:-	IMR32_AUTONOMIC_GANGLIA	0.86	1	0.14	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO2	5	0	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IMR32_AUTONOMIC_GANGLIA	1	1	0.0583	FALSE	59	21	0	114	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	RARA--CASC3	4	3	RARA	2263	chr17:38474700:+	CASC3	22949	chr17:38318006:+	ONLY_REF_SPLICE	YES	74	201	0.09	0.03	0.0466	0.035	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,CASC3->Oncogene{Bushman},cancer_susceptibility_candidate_3,chr17:38296571-38328436:+	IMR32_AUTONOMIC_GANGLIA	0.03	0.09	0.0816	TRUE	0	0	0	1	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	4	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4497	0	0	1	0.0466	0.0233	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	IMR32_AUTONOMIC_GANGLIA	0	1	0.0699	FALSE	13	9	0	364	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO2	4	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	29	8	0.17	0.43	0.0466	0.0233	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IMR32_AUTONOMIC_GANGLIA	0.17	0.43	0.0699	FALSE	59	21	0	114	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	4	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	5	1	0.55	0.0466	0.0233	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	IMR32_AUTONOMIC_GANGLIA	0.55	1	0.0699	TRUE	477	1352	189	275	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	CTDSPL2--YWHAE	4	1	CTDSPL2	1539	chr15:44719970:+	YWHAE	31893	chr17:1265302:-	ONLY_REF_SPLICE	YES	134	1866	0.04	0	0.0466	0.0117	CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon	IMR32_AUTONOMIC_GANGLIA	0	0.04	0.0583	FALSE	0	0	0	1	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	XXbac-BPG252P9.9--TUBBP2	4	1	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	NO	3504	0	0	1	0.0466	0.0117	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	IMR32_AUTONOMIC_GANGLIA	0	1	0.0583	FALSE	0	1	0	48	1	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO2	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IMR32_AUTONOMIC_GANGLIA	1	1	0.0466	FALSE	59	21	0	114	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO2	4	0	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IMR32_AUTONOMIC_GANGLIA	1	1	0.0466	FALSE	59	21	0	114	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO2	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IMR32_AUTONOMIC_GANGLIA	1	1	0.0466	FALSE	59	21	0	114	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	IMR32_AUTONOMIC_GANGLIA	1	1	0.0466	FALSE	189	492	56	216	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	4	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0.0466	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IMR32_AUTONOMIC_GANGLIA	1	1	0.0816	FALSE	499	1288	110	792	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	MT-ATP6--MT-CO2	3	3	MT-ATP6	1169	chrM:8695:+	MT-CO2	4981	chrM:7885:+	INCL_NON_REF_SPLICE	YES	27	1	0.18	0.86	0.035	0.035	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IMR32_AUTONOMIC_GANGLIA	0.18	0.86	0.07	FALSE	59	21	0	114	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	FAF1--STAT5A	3	2	FAF1	18301	chr1:51005264:-	STAT5A	30722	chr17:40440074:+	ONLY_REF_SPLICE	YES	58	16	0.08	0.24	0.035	0.0233	FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,STAT5A->Oncogene{Bushman},chr17:40439565-40463961:+,signal_transducer_and_activator_of_transcription_5A	IMR32_AUTONOMIC_GANGLIA	0.08	0.24	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	CPSF6--C9orf3	3	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	205	220	0.02	0.02	0.035	0.0117	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	IMR32_AUTONOMIC_GANGLIA	0.02	0.02	0.0467	TRUE	53	99	2	44	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	NFIA--AC103563.2	3	1	NFIA	1208	chr1:61331138:+	AC103563.2	31264	chr2:95619207:-	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.035	0.0117	NFIA->chr1:61330931-61928465:+,nuclear_factor_I_A,AC103563.2->chr2:95618906-95619338:-	IMR32_AUTONOMIC_GANGLIA	0.67	1	0.0467	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	XXbac-BPG252P9.9--TUBBP2	3	1	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	1520	0	0	1	0.035	0.0117	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	IMR32_AUTONOMIC_GANGLIA	0	1	0.0467	FALSE	0	1	0	48	1	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	TMTC2--GRIP1	3	0	TMTC2	1790	chr12:83081448:+	GRIP1	55092	chr12:66747343:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.035	0	TMTC2->chr12:83080659-83528649:+,transmembrane_and_tetratricopeptide_repeat_containing_2,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	IMR32_AUTONOMIC_GANGLIA	1	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	RP11-123O10.4--GRIP1	2	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0.035	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	IMR32_AUTONOMIC_GANGLIA	1	1	0.0583	FALSE	93	270	15	244	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	1	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	39	0	0.13	1	0.0117	0.0583	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	IMR32_AUTONOMIC_GANGLIA	0.13	1	0.07	FALSE	164	806	69	479	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	NDUFA4--PHF14	2	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	IMR32_AUTONOMIC_GANGLIA	1	1	0.0233	TRUE	19	32	3	60	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	TSSC2--GPI	2	0	TSSC2	2907	chr11:3405514:+	GPI	29503	chr19:34884153:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	TSSC2->chr11:3402191-3430208:+,tumor_suppressing_subtransferable_candidate_2_pseudogene,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	IMR32_AUTONOMIC_GANGLIA	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	AC007392.3--AC007403.2	1	3	AC007392.3	9796	chr2:66940673:+	AC007403.2	19569	chr2:67172420:+	ONLY_REF_SPLICE	YES	6	1	0.4	0.8	0.0117	0.035	GTEx_FI:{Colon=[count:4=pct:2.1],Prostate=[count:3=pct:4.9],Brain=[count:3=pct:0.5],Uterus=[count:2=pct:4.7],Esophagus=[count:2=pct:0.5],Bladder=[count:1=pct:11.1]},AC007392.3->chr2:66801162-66957289:+,AC007403.2->chr2:67131568-67198594:+	IMR32_AUTONOMIC_GANGLIA	0.4	0.8	0.0467	TRUE	0	0	0	1	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	AC007392.3--AC007403.2	1	3	AC007392.3	8704	chr2:66924635:+	AC007403.2	19569	chr2:67172420:+	ONLY_REF_SPLICE	NO	9	1	0.31	0.8	0.0117	0.035	GTEx_FI:{Colon=[count:4=pct:2.1],Prostate=[count:3=pct:4.9],Brain=[count:3=pct:0.5],Uterus=[count:2=pct:4.7],Esophagus=[count:2=pct:0.5],Bladder=[count:1=pct:11.1]},AC007392.3->chr2:66801162-66957289:+,AC007403.2->chr2:67131568-67198594:+	IMR32_AUTONOMIC_GANGLIA	0.31	0.8	0.0467	TRUE	1	4	0	3	4	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	AC007392.3--AC007403.2	1	3	AC007392.3	6267	chr2:66918855:+	AC007403.2	19569	chr2:67172420:+	ONLY_REF_SPLICE	NO	121	1	0.03	0.8	0.0117	0.035	GTEx_FI:{Colon=[count:4=pct:2.1],Prostate=[count:3=pct:4.9],Brain=[count:3=pct:0.5],Uterus=[count:2=pct:4.7],Esophagus=[count:2=pct:0.5],Bladder=[count:1=pct:11.1]},AC007392.3->chr2:66801162-66957289:+,AC007403.2->chr2:67131568-67198594:+	IMR32_AUTONOMIC_GANGLIA	0.03	0.8	0.0467	TRUE	11	3	0	1	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	DDX1--NBAS	1	2	DDX1	11293	chr2:15747437:+	NBAS	77357	chr2:15359092:-	ONLY_REF_SPLICE	NO	9148	1296	0	0	0.0117	0.0233	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Anterior_cingulate_cortex_(BA24)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:+:-:[29848],DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence	IMR32_AUTONOMIC_GANGLIA	0	0	0.035	FALSE	0	0	0	1	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	5	1	0.38	0.0117	0.0233	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	IMR32_AUTONOMIC_GANGLIA	0.38	1	0.035	TRUE	274	363	69	150	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	AC007392.3--DDX1	1	1	AC007392.3	6267	chr2:66918855:+	DDX1	24181	chr2:15746074:+	ONLY_REF_SPLICE	YES	121	12477	0.02	0	0.0117	0.0117	AC007392.3->chr2:66801162-66957289:+,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	IMR32_AUTONOMIC_GANGLIA	0	0.02	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	C7orf50--MAD1L1	1	1	C7orf50	3078	chr7:1166893:-	MAD1L1	50779	chr7:1938026:-	ONLY_REF_SPLICE	NO	119	38	0.02	0.05	0.0117	0.0117	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	IMR32_AUTONOMIC_GANGLIA	0.02	0.05	0.0234	TRUE	0	1	0	6	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	C7orf50--MAD1L1	1	1	C7orf50	3078	chr7:1166893:-	MAD1L1	55558	chr7:1855864:-	ONLY_REF_SPLICE	YES	119	30	0.02	0.06	0.0117	0.0117	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	IMR32_AUTONOMIC_GANGLIA	0.02	0.06	0.0234	TRUE	0	4	0	5	2	TRUE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	LYPLAL1--RRP15	1	1	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	YES	87	177	0.02	0.01	0.0117	0.0117	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	IMR32_AUTONOMIC_GANGLIA	0.01	0.02	0.0234	FALSE	0	12	0	13	2	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0117	0.0117	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	IMR32_AUTONOMIC_GANGLIA	1	1	0.0234	FALSE	515	4851	409	746	0	FALSE	ACH-000310
IMR32_AUTONOMIC_GANGLIA	UBAP2L--C1orf43	1	1	UBAP2L	3350	chr1:154197689:+	C1orf43	39499	chr1:154180124:-	ONLY_REF_SPLICE	YES	349	613	0.01	0	0.0117	0.0117	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Artery_-_Coronary=1},NEIGHBORS_OVERLAP:+:-:[449],UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like,C1orf43->chr1:154179182-154193104:-,chromosome_1_open_reading_frame_43	IMR32_AUTONOMIC_GANGLIA	0	0.01	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000310
HEC1A_ENDOMETRIUM	MT-ATP6--MT-CO2	8891	1	MT-ATP6	1408	chrM:8934:+	MT-CO2	5049	chrM:7953:+	INCL_NON_REF_SPLICE	YES	40	2	1	1	94.6047	0.0106	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC1A_ENDOMETRIUM	1	1	94.6153	FALSE	59	21	0	114	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	TIMM23B--LINC00843	149	45	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5854	0.4788	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HEC1A_ENDOMETRIUM	1	1	2.0642	TRUE	508	994	45	981	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	TICAM1--PLIN3	87	44	TICAM1	1091	chr19:4831626:-	PLIN3	7727	chr19:4867730:-	INCL_NON_REF_SPLICE	YES	21	0	0.86	1	0.9257	0.4682	LOCAL_REARRANGEMENT:-:[6637],TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1,PLIN3->chr19:4838353-4867780:-,perilipin_3	HEC1A_ENDOMETRIUM	0.86	1	1.3939	TRUE	0	0	0	2	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	TIMM23--RP11-464F9.1	80	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	258	3	0.24	0.96	0.8512	0.0213	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HEC1A_ENDOMETRIUM	0.24	0.96	0.8725	TRUE	519	3926	326	965	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-TA--MT-TC	47	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5001	0.0638	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC1A_ENDOMETRIUM	1	1	0.5639	FALSE	462	80	0	856	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	TICAM1--PLIN3	42	20	TICAM1	1091	chr19:4831626:-	PLIN3	9813	chr19:4861423:-	ONLY_REF_SPLICE	YES	21	22	0.75	0.74	0.4469	0.2128	LOCAL_REARRANGEMENT:-:[6637],TICAM1->chr19:4815944-4831716:-,toll_like_receptor_adaptor_molecule_1,PLIN3->chr19:4838353-4867780:-,perilipin_3	HEC1A_ENDOMETRIUM	0.74	0.75	0.6597	TRUE	0	0	0	2	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	MAP3K1--NDUFAF2	41	15	MAP3K1	18803	chr5:56184184:+	NDUFAF2	27891	chr5:60368952:+	ONLY_REF_SPLICE	YES	25	139	0.69	0.29	0.4363	0.1596	{Klijn_CCL:Uterus=1},MAP3K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:56111401-56191979:+,mitogen-activated_protein_kinase_kinase_kinase_1,NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+	HEC1A_ENDOMETRIUM	0.29	0.69	0.5959	TRUE	0	0	0	2	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	MT-TA--MT-TC	36	8	MT-TA	1053	chrM:5603:-	MT-TC	4081	chrM:5815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3831	0.0851	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC1A_ENDOMETRIUM	1	1	0.4682	FALSE	462	80	0	856	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND6--MT-TE	36	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3831	0.0213	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1A_ENDOMETRIUM	1	1	0.4044	FALSE	499	1288	110	792	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ND4L	6	90	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	6	0	0.94	1	0.0638	0.9576	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC1A_ENDOMETRIUM	0.94	1	1.0214	FALSE	344	826	44	306	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	AP000525.9--LA16c-60G3.6	27	3	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	8	0	0.79	1	0.2873	0.0319	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HEC1A_ENDOMETRIUM	0.79	1	0.3192	TRUE	0	42	0	133	42	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ND4L	7	63	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0745	0.6704	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC1A_ENDOMETRIUM	0.99	1	0.7449	FALSE	344	821	44	306	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ATP6--MT-CO2	21	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	36	22	0.43	0.55	0.2235	0.0638	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC1A_ENDOMETRIUM	0.43	0.55	0.2873	FALSE	59	21	0	114	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4L--MT-RNR2	22	1	MT-ND4L	1159	chrM:10628:+	MT-RNR2	4852	chrM:2225:+	INCL_NON_REF_SPLICE	YES	954	9596	0.02	0	0.2341	0.0106	LOCAL_REARRANGEMENT:+:[7241],MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEC1A_ENDOMETRIUM	0	0.02	0.2447	FALSE	17	32	5	7	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND6--MT-TE	21	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2235	0.0213	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1A_ENDOMETRIUM	1	1	0.2448	FALSE	499	1288	110	792	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	PLXDC1--TAF13	21	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2235	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HEC1A_ENDOMETRIUM	1	1	0.2235	TRUE	7	10	0	216	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ND4L	4	65	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0426	0.6916	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC1A_ENDOMETRIUM	0.97	1	0.7342	FALSE	344	826	44	306	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	HSP90AB1--MT-RNR2	16	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3488	0	0	1	0.1702	0.0106	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEC1A_ENDOMETRIUM	0	1	0.1808	FALSE	13	9	0	364	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	14	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	5	1	0.81	0.149	0.0851	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC1A_ENDOMETRIUM	0.81	1	0.2341	FALSE	515	4851	409	746	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND6--MT-TE	13	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.1383	0.0851	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1A_ENDOMETRIUM	0.91	1	0.2234	FALSE	499	1288	110	792	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	NRIP1--AF127936.7	12	10	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	24	0	0.48	1	0.1277	0.1064	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC1A_ENDOMETRIUM	0.48	1	0.2341	FALSE	164	806	69	479	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	11	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	5	0.95	0.81	0.117	0.1064	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC1A_ENDOMETRIUM	0.81	0.95	0.2234	FALSE	467	2173	244	435	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	DNAJC6--LEPR	10	13	DNAJC6	2273	chr1:65720332:+	LEPR	34245	chr1:66031229:+	ONLY_REF_SPLICE	YES	2	20	0.92	0.53	0.1064	0.1383	NEIGHBORS[4696],DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+,LEPR->chr1:65886248-66107242:+,leptin_receptor	HEC1A_ENDOMETRIUM	0.53	0.92	0.2447	FALSE	0	0	0	2	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	NIPA2--POLA1	13	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1383	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	HEC1A_ENDOMETRIUM	1	1	0.1383	TRUE	46	1352	75	139	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ND4L	3	34	MT-ND4	1112	chrM:10871:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0319	0.3618	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC1A_ENDOMETRIUM	0.95	1	0.3937	FALSE	344	826	44	306	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	8	14	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0851	0.149	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC1A_ENDOMETRIUM	1	1	0.2341	FALSE	407	2205	196	549	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ND4L	4	27	MT-ND4	1101	chrM:10860:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0426	0.2873	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC1A_ENDOMETRIUM	0.94	1	0.3299	FALSE	344	826	44	306	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ND4L	9	6	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	28	0	0.35	1	0.0958	0.0638	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC1A_ENDOMETRIUM	0.35	1	0.1596	FALSE	344	827	44	306	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-TA--MT-TC	10	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1064	0.0106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC1A_ENDOMETRIUM	1	1	0.117	FALSE	462	80	0	856	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ND4L	5	20	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	6	0	0.81	1	0.0532	0.2128	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC1A_ENDOMETRIUM	0.81	1	0.266	FALSE	344	826	44	306	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	RP11-123O10.4--GRIP1	9	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0958	0.0319	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HEC1A_ENDOMETRIUM	1	1	0.1277	FALSE	416	2512	207	587	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ND4L	6	13	MT-ND4	1447	chrM:11206:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	209	0	0.08	1	0.0638	0.1383	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC1A_ENDOMETRIUM	0.08	1	0.2021	FALSE	344	827	44	306	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ND4L	6	13	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	287	0	0.06	1	0.0638	0.1383	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC1A_ENDOMETRIUM	0.06	1	0.2021	FALSE	344	827	44	306	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ND4L	3	22	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	479	0	0.05	1	0.0319	0.2341	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC1A_ENDOMETRIUM	0.05	1	0.266	FALSE	344	827	44	306	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	NPM1P24--SET	8	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0851	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HEC1A_ENDOMETRIUM	1	1	0.0851	TRUE	0	0	0	434	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	RP11-120D5.1--MID1	6	8	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	7	1	0.67	0.0638	0.0851	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEC1A_ENDOMETRIUM	0.67	1	0.1489	FALSE	16	356	14	466	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ND4L	4	15	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0.1596	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC1A_ENDOMETRIUM	1	1	0.2022	FALSE	344	821	44	306	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND6--MT-TE	5	11	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.84	1	0.0532	0.117	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1A_ENDOMETRIUM	0.84	1	0.1702	FALSE	499	1288	110	792	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND6--MT-TE	7	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0745	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1A_ENDOMETRIUM	1	1	0.0745	FALSE	499	1288	110	792	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	APP--MT-CO3	5	5	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	2027	8749	0	0	0.0532	0.0532	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HEC1A_ENDOMETRIUM	0	0	0.1064	FALSE	0	0	0	26	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ATP6--MT-CO1	6	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	7005	20667	0	0	0.0638	0.0106	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC1A_ENDOMETRIUM	0	0	0.0744	FALSE	183	104	9	328	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ND4L	3	13	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	6	0	0.73	1	0.0319	0.1383	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC1A_ENDOMETRIUM	0.73	1	0.1702	FALSE	344	826	44	306	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ND4L	3	13	MT-ND4	1278	chrM:11037:+	MT-ND4L	5663	chrM:10754:+	INCL_NON_REF_SPLICE	YES	27	0	0.37	1	0.0319	0.1383	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC1A_ENDOMETRIUM	0.37	1	0.1702	FALSE	344	827	44	306	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	NRIP1--AF127936.7	6	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0638	0.0106	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC1A_ENDOMETRIUM	0.88	1	0.0744	FALSE	292	1546	117	613	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	RP11-608O21.1--SLIT2	6	1	RP11-608O21.1	2288	chr4:19535241:+	SLIT2	13922	chr4:20469375:+	ONLY_REF_SPLICE	YES	2	1	0.78	0.88	0.0638	0.0106	RP11-608O21.1->chr4:19457059-19911315:+,SLIT2->ArcherDX_panel,FoundationOne_panel,chr4:20254883-20622184:+,slit_guidance_ligand_2	HEC1A_ENDOMETRIUM	0.78	0.88	0.0744	TRUE	0	0	0	1	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ND4L	4	8	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0426	0.0851	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC1A_ENDOMETRIUM	0.92	1	0.1277	FALSE	344	826	44	306	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ATP6--MT-CO1	4	7	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2561	21379	0	0	0.0426	0.0745	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC1A_ENDOMETRIUM	0	0	0.1171	FALSE	183	104	9	328	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ATP6--MT-CO2	5	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	37	14	0.18	0.36	0.0532	0.0319	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC1A_ENDOMETRIUM	0.18	0.36	0.0851	FALSE	59	21	0	114	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ATP8	5	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	12858	1	0	0.89	0.0532	0.0319	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC1A_ENDOMETRIUM	0	0.89	0.0851	FALSE	231	217	16	283	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ATP8	5	2	MT-ND4	1477	chrM:11236:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12639	6	0	0.54	0.0532	0.0213	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC1A_ENDOMETRIUM	0	0.54	0.0745	FALSE	231	217	16	283	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	HSP90AB1--MT-RNR2	5	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3481	0	0	1	0.0532	0.0106	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEC1A_ENDOMETRIUM	0	1	0.0638	FALSE	13	9	0	364	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	NRIP1--AF127936.7	4	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	28	0	0.24	1	0.0426	0.0532	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC1A_ENDOMETRIUM	0.24	1	0.0958	FALSE	125	705	46	456	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	SLC1A5--MT-ND4L	5	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	511	0	0.01	1	0.0532	0.0106	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC1A_ENDOMETRIUM	0.01	1	0.0638	FALSE	0	0	0	189	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	VTI1A--RP11-57H14.3	5	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	56	0	0.1	1	0.0532	0.0106	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HEC1A_ENDOMETRIUM	0.1	1	0.0638	FALSE	272	151	14	158	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	FTH1--ACTB	5	0	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0532	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HEC1A_ENDOMETRIUM	1	1	0.0532	TRUE	1	0	0	97	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND6--MT-TE	3	8	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.79	1	0.0319	0.0851	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1A_ENDOMETRIUM	0.79	1	0.117	FALSE	499	1288	110	792	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND6--MT-TE	4	3	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0.0319	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1A_ENDOMETRIUM	1	1	0.0745	FALSE	499	1288	110	792	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	RP11-123O10.4--GRIP1	4	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0426	0.0319	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HEC1A_ENDOMETRIUM	1	1	0.0745	FALSE	93	270	15	244	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ATP6--MT-CO1	4	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7124	21068	0	0	0.0426	0.0213	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC1A_ENDOMETRIUM	0	0	0.0639	FALSE	183	104	9	328	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND1--MT-RNR2	4	2	MT-ND1	1235	chrM:3541:+	MT-RNR2	5565	chrM:2279:+	INCL_NON_REF_SPLICE	YES	8	9544	0.43	0	0.0426	0.0213	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HEC1A_ENDOMETRIUM	0	0.43	0.0639	FALSE	120	26	5	87	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ND4L	3	6	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	6	0	0.6	1	0.0319	0.0638	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC1A_ENDOMETRIUM	0.6	1	0.0957	FALSE	344	826	44	306	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND6--MT-TE	3	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0319	0.0638	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC1A_ENDOMETRIUM	0.9	1	0.0957	FALSE	499	1288	110	792	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	14	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0106	0.149	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC1A_ENDOMETRIUM	1	1	0.1596	FALSE	275	511	55	178	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	DNAJC6--LEPR	1	13	DNAJC6	3465	chr1:65730615:+	LEPR	34245	chr1:66031229:+	ONLY_REF_SPLICE	YES	2	20	0.88	0.41	0.0106	0.1383	NEIGHBORS[4696],DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+,LEPR->chr1:65886248-66107242:+,leptin_receptor	HEC1A_ENDOMETRIUM	0.41	0.88	0.1489	FALSE	0	0	0	2	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ATP6--MT-CO2	4	1	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	29	14	0.15	0.26	0.0426	0.0106	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC1A_ENDOMETRIUM	0.15	0.26	0.0532	FALSE	59	21	0	114	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ATP6--MT-CO2	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	16	12	0.24	0.29	0.0426	0.0106	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC1A_ENDOMETRIUM	0.24	0.29	0.0532	FALSE	59	21	0	114	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ATP8	4	1	MT-ND4	1200	chrM:10959:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	NO	9341	1	0	0.83	0.0426	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC1A_ENDOMETRIUM	0	0.83	0.0532	FALSE	230	193	14	283	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ATP8	4	1	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	6033	1	0	0.83	0.0426	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC1A_ENDOMETRIUM	0	0.83	0.0532	FALSE	230	193	14	283	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	TXNRD1--CHST11	4	1	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	YES	1051	3	0	0.62	0.0426	0.0106	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	HEC1A_ENDOMETRIUM	0	0.62	0.0532	FALSE	0	2	1	13	2	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ATP8	4	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC1A_ENDOMETRIUM	1	1	0.0426	FALSE	230	198	14	283	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ATP8	4	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0426	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC1A_ENDOMETRIUM	1	1	0.0426	FALSE	231	205	14	283	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MAP3K1--NDUFAF2	2	6	MAP3K1	18803	chr5:56184184:+	NDUFAF2	30068	chr5:60394819:+	ONLY_REF_SPLICE	YES	25	97	0.24	0.08	0.0213	0.0638	{Klijn_CCL:Uterus=1},MAP3K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:56111401-56191979:+,mitogen-activated_protein_kinase_kinase_kinase_1,NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+	HEC1A_ENDOMETRIUM	0.08	0.24	0.0851	TRUE	0	0	0	2	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ATP8	3	2	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	11779	677	0	0.01	0.0319	0.0213	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC1A_ENDOMETRIUM	0	0.01	0.0532	FALSE	231	217	16	283	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ND4--MT-ATP8	3	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	11655	6	0	0.45	0.0319	0.0213	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEC1A_ENDOMETRIUM	0	0.45	0.0532	FALSE	231	217	16	283	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	DNAJC25--UGCG	3	1	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	116	69	0.03	0.05	0.0319	0.0106	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	HEC1A_ENDOMETRIUM	0.03	0.05	0.0425	TRUE	50	73	10	50	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	FBXL5--RP11-484O2.1	3	1	FBXL5	16339	chr4:15613889:-	RP11-484O2.1	22958	chr4:15364147:-	ONLY_REF_SPLICE	YES	68	0	0.06	1	0.0319	0.0106	FBXL5->F-box_and_leucine-rich_repeat_protein_5,chr4:15606162-15683302:-,RP11-484O2.1->chr4:15359765-15421656:-	HEC1A_ENDOMETRIUM	0.06	1	0.0425	TRUE	1	6	0	5	2	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	7036	18795	0	0	0.0319	0.0106	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC1A_ENDOMETRIUM	0	0	0.0425	FALSE	183	104	9	328	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ATP6--MT-CO2	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	16	12	0.2	0.25	0.0319	0.0106	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC1A_ENDOMETRIUM	0.2	0.25	0.0425	FALSE	59	21	0	114	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ATP6--MT-CO2	3	1	MT-ATP6	1081	chrM:8607:+	MT-CO2	4795	chrM:7699:+	INCL_NON_REF_SPLICE	YES	13	5	0.24	0.44	0.0319	0.0106	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC1A_ENDOMETRIUM	0.24	0.44	0.0425	FALSE	59	21	0	114	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	SLC1A5--MT-ND4L	3	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	503	0	0.01	1	0.0319	0.0106	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC1A_ENDOMETRIUM	0.01	1	0.0425	FALSE	0	0	0	189	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	LDLRAD3--PRR5L	3	0	LDLRAD3	5673	chr11:36120011:+	PRR5L	17578	chr11:36317840:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	HEC1A_ENDOMETRIUM	1	1	0.0319	FALSE	0	52	1	15	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MACF1--CSGALNACT1	3	0	MACF1	107551	chr1:39924107:+	CSGALNACT1	147751	chr8:19263300:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,CSGALNACT1->chondroitin_sulfate_N-acetylgalactosaminyltransferase_1,chr8:19261672-19615540:-	HEC1A_ENDOMETRIUM	1	1	0.0319	TRUE	0	0	0	1	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	MT-ATP6--MT-CO1	3	0	MT-ATP6	1098	chrM:8624:+	MT-CO1	6183	chrM:7405:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0319	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEC1A_ENDOMETRIUM	1	1	0.0319	FALSE	183	103	9	328	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	RP11-120D5.1--MID1	1	8	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	0	5	1	0.64	0.0106	0.0851	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEC1A_ENDOMETRIUM	0.64	1	0.0957	FALSE	0	23	1	67	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	MAP3K1--NDUFAF2	1	6	MAP3K1	18803	chr5:56184184:+	NDUFAF2	31109	chr5:60448531:+	ONLY_REF_SPLICE	YES	25	103	0.22	0.06	0.0106	0.0638	{Klijn_CCL:Uterus=1},MAP3K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:56111401-56191979:+,mitogen-activated_protein_kinase_kinase_kinase_1,NDUFAF2->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_2,chr5:60240956-60448853:+	HEC1A_ENDOMETRIUM	0.06	0.22	0.0744	TRUE	0	0	0	1	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	LYPD6--AC144449.1	2	1	LYPD6	6579	chr2:150305661:+	AC144449.1	18144	chr2:150600232:+	ONLY_REF_SPLICE	YES	29	0	0.09	1	0.0213	0.0106	GTEx_FI:{Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9]},LYPD6->LY6/PLAUR_domain_containing_6,chr2:150186499-150330662:+,AC144449.1->chr2:150443710-150704747:+	HEC1A_ENDOMETRIUM	0.09	1	0.0319	TRUE	2	21	0	4	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	RP11-120D5.1--MID1	1	5	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	7	0.75	0.46	0.0106	0.0532	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEC1A_ENDOMETRIUM	0.46	0.75	0.0638	FALSE	0	48	1	163	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	RP13-188A5.1--KLF8	2	1	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	4	2	0.43	0.6	0.0213	0.0106	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	HEC1A_ENDOMETRIUM	0.43	0.6	0.0319	TRUE	10	78	6	20	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0.0106	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HEC1A_ENDOMETRIUM	1	1	0.0319	TRUE	62	24	1	171	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	BSG--GRAMD4	2	0	BSG	2405	chr19:572701:+	GRAMD4	16859	chr22:47022648:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,GRAMD4->GRAM_domain_containing_4,chr22:46971909-47075688:+	HEC1A_ENDOMETRIUM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	DHRS13--NPM1	2	0	DHRS13	3082	chr17:27228008:-	NPM1	14645	chr5:170827157:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	DHRS13->chr17:27224799-27230089:-,dehydrogenase/reductase_(SDR_family)_member_13,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HEC1A_ENDOMETRIUM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	EIF3G--TMUB2	2	0	EIF3G	2253	chr19:10229344:-	TMUB2	12436	chr17:42267869:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	EIF3G->chr19:10225693-10230596:-,eukaryotic_translation_initiation_factor_3_subunit_G,TMUB2->chr17:42264338-42269099:+,transmembrane_and_ubiquitin_like_domain_containing_2	HEC1A_ENDOMETRIUM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	TRMT61B--TTC27	2	0	TRMT61B	1723	chr2:29092445:-	TTC27	35077	chr2:33042524:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	TRMT61B->chr2:29072687-29093167:-,tRNA_methyltransferase_61B,TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27	HEC1A_ENDOMETRIUM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	TXNRD1--TACC3	2	0	TXNRD1	10019	chr12:104680887:+	TACC3	48053	chr4:1746245:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0213	0	TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	HEC1A_ENDOMETRIUM	1	1	0.0213	TRUE	0	0	0	1	0	TRUE	ACH-000954
HEC1A_ENDOMETRIUM	BSG--CNN2	1	1	BSG	2405	chr19:572701:+	CNN2	18085	chr19:1036129:+	ONLY_REF_SPLICE	YES	675	774	0	0	0.0106	0.0106	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,CNN2->calponin_2,chr19:1026298-1039068:+	HEC1A_ENDOMETRIUM	0	0	0.0212	FALSE	1	0	0	1	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	EFCAB11--RP11-944C7.1	1	1	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	44	0	0.04	1	0.0106	0.0106	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	HEC1A_ENDOMETRIUM	0.04	1	0.0212	TRUE	31	91	1	18	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	GULP1--CTD-2354A18.1	1	1	GULP1	4852	chr2:189248616:+	CTD-2354A18.1	32676	chr18:70999698:+	ONLY_REF_SPLICE	NO	237	398	0.01	0.01	0.0106	0.0106	GULP1->GULP,_engulfment_adaptor_PTB_domain_containing_1,chr2:189156396-189460653:+,CTD-2354A18.1->chr18:70992176-71017113:+	HEC1A_ENDOMETRIUM	0.01	0.01	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	18197	chr21:16225752:-	ONLY_REF_SPLICE	NO	24	11	0.08	0.15	0.0106	0.0106	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC1A_ENDOMETRIUM	0.08	0.15	0.0212	FALSE	0	1	0	3	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	24	11	0.08	0.15	0.0106	0.0106	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC1A_ENDOMETRIUM	0.08	0.15	0.0212	FALSE	8	57	1	47	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	TULP4--RP11-732M18.3	1	1	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	18	0	0.1	1	0.0106	0.0106	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	HEC1A_ENDOMETRIUM	0.1	1	0.0212	TRUE	126	140	6	21	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	24436	chr10:114650725:+	ONLY_REF_SPLICE	YES	56	0	0.03	1	0.0106	0.0106	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HEC1A_ENDOMETRIUM	0.03	1	0.0212	FALSE	21	3	0	16	0	FALSE	ACH-000954
HEC1A_ENDOMETRIUM	WASF2--XRN2	1	1	WASF2	1173	chr1:27816497:-	XRN2	36254	chr20:21346059:+	ONLY_REF_SPLICE	YES	282	236	0.01	0.01	0.0106	0.0106	WASF2->Oncogene{Bushman},WAS_protein_family_member_2,chr1:27730730-27816669:-,XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+	HEC1A_ENDOMETRIUM	0.01	0.01	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000954
NCIH2023_LUNG	FTL--MT-CO1	1213	6	FTL	1296	chr19:49468853:+	MT-CO1	5895	chrM:6220:+	INCL_NON_REF_SPLICE	YES	11978	12748	0.09	0.09	12.649	0.0626	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2023_LUNG	0.09	0.09	12.7116	FALSE	0	7	0	14	0	FALSE	ACH-000781
NCIH2023_LUNG	HSP90AB1--MT-RNR2	359	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1929	0	0.16	1	3.7436	0.0209	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2023_LUNG	0.16	1	3.7645	FALSE	13	9	0	364	0	FALSE	ACH-000781
NCIH2023_LUNG	TFG--GPR128	194	67	TFG	5019	chr3:100438902:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	254	0	0.51	1	2.023	0.6987	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	NCIH2023_LUNG	0.51	1	2.7217	TRUE	12	123	7	17	0	FALSE	ACH-000781
NCIH2023_LUNG	TIMM23B--LINC00843	95	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9906	0.2086	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2023_LUNG	0.99	1	1.1992	TRUE	508	994	45	981	0	FALSE	ACH-000781
NCIH2023_LUNG	GRB14--IFIH1	65	15	GRB14	9806	chr2:165378490:-	IFIH1	21083	chr2:163167443:-	ONLY_REF_SPLICE	YES	11	18	0.88	0.82	0.6778	0.1564	{Klijn_CCL:Lung=1},GRB14->chr2:165349322-165478358:-,growth_factor_receptor_bound_protein_14,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	NCIH2023_LUNG	0.82	0.88	0.8342	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	GRB14--CSRNP3	62	21	GRB14	9806	chr2:165378490:-	CSRNP3	22587	chr2:166423287:+	ONLY_REF_SPLICE	YES	11	1	0.88	0.99	0.6465	0.219	GRB14->chr2:165349322-165478358:-,growth_factor_receptor_bound_protein_14,CSRNP3->chr2:166326157-166545917:+,cysteine_and_serine_rich_nuclear_protein_3	NCIH2023_LUNG	0.88	0.99	0.8655	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	TIMM23--RP11-464F9.1	51	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5318	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2023_LUNG	1	1	0.5318	TRUE	519	3926	326	965	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-TA--MT-TC	48	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5005	0.0417	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2023_LUNG	1	1	0.5422	FALSE	462	80	0	856	0	FALSE	ACH-000781
NCIH2023_LUNG	PLEKHG2--MED29	29	26	PLEKHG2	5416	chr19:39907640:+	MED29	22567	chr19:39888097:+	ONLY_REF_SPLICE	YES	32	69	0.63	0.44	0.3024	0.2711	LOCAL_REARRANGEMENT:+:[11948],PLEKHG2->Oncogene{Bushman},chr19:39903225-39919054:+,pleckstrin_homology_and_RhoGEF_domain_containing_G2,MED29->chr19:39881943-39891277:+,mediator_complex_subunit_29	NCIH2023_LUNG	0.44	0.63	0.5735	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	ELOVL5--PKHD1	27	11	ELOVL5	1333	chr6:53213615:-	PKHD1	47010	chr6:51900519:-	ONLY_REF_SPLICE	YES	249	5	0.13	0.88	0.2816	0.1147	ELOVL5->ELOVL_fatty_acid_elongase_5,Oncogene{Bushman},chr6:53132196-53213947:-,PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)	NCIH2023_LUNG	0.13	0.88	0.3963	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	MT-ND5--MT-ATP8	29	3	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1739	5	0.02	0.86	0.3024	0.0313	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2023_LUNG	0.02	0.86	0.3337	FALSE	43	37	8	105	0	FALSE	ACH-000781
NCIH2023_LUNG	DPM2--FAM102A	26	9	DPM2	2932	chr9:130698832:-	FAM102A	10999	chr9:130716204:-	ONLY_REF_SPLICE	YES	219	62	0.14	0.36	0.2711	0.0939	NUCLCLUST,LOCAL_REARRANGEMENT:-:[2095],DPM2->chr9:130697378-130700763:-,dolichyl-phosphate_mannosyltransferase_polypeptide_2,_regulatory_subunit,FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A	NCIH2023_LUNG	0.14	0.36	0.365	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	ZNF654--HMGB2	25	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2607	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2023_LUNG	1	1	0.2607	TRUE	0	0	0	518	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-ND6--MT-TE	21	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.219	0.0626	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2023_LUNG	1	1	0.2816	FALSE	499	1288	110	792	0	FALSE	ACH-000781
NCIH2023_LUNG	FTL--MT-CO1	21	0	FTL	1122	chr19:49468679:+	MT-CO1	6496	chrM:6821:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.219	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2023_LUNG	1	1	0.219	FALSE	0	7	0	14	0	FALSE	ACH-000781
NCIH2023_LUNG	RP11-123O10.4--GRIP1	21	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.219	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2023_LUNG	1	1	0.219	FALSE	416	2512	207	587	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-ND5--MT-ATP8	19	6	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.1981	0.0626	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2023_LUNG	0.89	1	0.2607	FALSE	43	37	8	105	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-CO2--MT-CO1	19	5	MT-CO2	1249	chrM:7834:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12	14895	0.67	0	0.1981	0.0521	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2023_LUNG	0	0.67	0.2502	FALSE	36	10	0	27	0	FALSE	ACH-000781
NCIH2023_LUNG	C15orf57--CBX3	16	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	13	41	0.65	0.37	0.1668	0.0834	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2023_LUNG	0.37	0.65	0.2502	TRUE	267	562	48	632	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-ND5--MT-ATP8	16	3	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3553	45	0.01	0.3	0.1668	0.0313	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2023_LUNG	0.01	0.3	0.1981	FALSE	43	37	8	105	0	FALSE	ACH-000781
NCIH2023_LUNG	AP000525.9--LA16c-60G3.6	16	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	11	0	0.61	1	0.1668	0.0104	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH2023_LUNG	0.61	1	0.1772	TRUE	0	42	0	133	42	FALSE	ACH-000781
NCIH2023_LUNG	ATOX1--ARSI	15	1	ATOX1	2364	chr5:151138107:-	ARSI	16416	chr5:149678175:-	ONLY_REF_SPLICE	YES	1	3	0.94	0.84	0.1564	0.0104	ATOX1->antioxidant_1_copper_chaperone,chr5:151121877-151152093:-,ARSI->arylsulfatase_family_member_I,chr5:149675906-149718870:-	NCIH2023_LUNG	0.84	0.94	0.1668	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	MT-ND5--MT-ATP8	13	2	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	3	530	0.83	0.03	0.1356	0.0209	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2023_LUNG	0.03	0.83	0.1565	FALSE	43	37	8	105	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-ND6--MT-TE	10	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1043	0.1356	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2023_LUNG	0.96	1	0.2399	FALSE	499	1288	110	792	0	FALSE	ACH-000781
NCIH2023_LUNG	ATOX1--CAMK2A	13	0	ATOX1	2364	chr5:151138107:-	CAMK2A	15145	chr5:149652722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1356	0	ATOX1->antioxidant_1_copper_chaperone,chr5:151121877-151152093:-,CAMK2A->calcium/calmodulin_dependent_protein_kinase_II_alpha,chr5:149599054-149669854:-	NCIH2023_LUNG	1	1	0.1356	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	MT-CO2--MT-CO1	10	10	MT-CO2	1345	chrM:7930:+	MT-CO1	4982	chrM:6201:+	INCL_NON_REF_SPLICE	YES	11	13027	0.65	0	0.1043	0.1043	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2023_LUNG	0	0.65	0.2086	FALSE	36	10	0	27	0	FALSE	ACH-000781
NCIH2023_LUNG	EMP2--TEKT5	12	1	EMP2	7419	chr16:10637427:-	TEKT5	24177	chr16:10729775:-	ONLY_REF_SPLICE	YES	202	0	0.06	1	0.1251	0.0104	LOCAL_REARRANGEMENT:-:[46803],EMP2->chr16:10622279-10674555:-,epithelial_membrane_protein_2,TEKT5->chr16:10721358-10788802:-,tektin_5	NCIH2023_LUNG	0.06	1	0.1355	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1251	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2023_LUNG	1	1	0.1251	TRUE	0	0	0	434	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-TA--MT-TC	11	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1147	0.0209	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2023_LUNG	1	1	0.1356	FALSE	462	80	0	856	0	FALSE	ACH-000781
NCIH2023_LUNG	DPM2--FAM102A	11	1	DPM2	2051	chr9:130699713:-	FAM102A	10999	chr9:130716204:-	ONLY_REF_SPLICE	YES	73	62	0.14	0.16	0.1147	0.0104	NUCLCLUST,LOCAL_REARRANGEMENT:-:[2095],DPM2->chr9:130697378-130700763:-,dolichyl-phosphate_mannosyltransferase_polypeptide_2,_regulatory_subunit,FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A	NCIH2023_LUNG	0.14	0.16	0.1251	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	MT-CO2--MT-CO1	9	7	MT-CO2	1278	chrM:7863:+	MT-CO1	5001	chrM:6220:+	INCL_NON_REF_SPLICE	YES	9	12753	0.64	0	0.0939	0.073	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2023_LUNG	0	0.64	0.1669	FALSE	36	10	0	27	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-ND6--MT-TE	9	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0939	0.0626	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2023_LUNG	1	1	0.1565	FALSE	499	1288	110	792	0	FALSE	ACH-000781
NCIH2023_LUNG	NRIP1--AF127936.7	10	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.1043	0.0104	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2023_LUNG	0.79	1	0.1147	FALSE	292	1546	117	613	0	FALSE	ACH-000781
NCIH2023_LUNG	TFG--GPR128	1	37	TFG	3935	chr3:100432713:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	343	0	0.1	1	0.0104	0.3858	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	NCIH2023_LUNG	0.1	1	0.3962	TRUE	1	1	0	1	0	FALSE	ACH-000781
NCIH2023_LUNG	SLC7A5--MT-ND4L	10	0	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1043	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2023_LUNG	1	1	0.1043	FALSE	0	0	0	23	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-ND6--MT-TE	6	15	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0626	0.1564	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2023_LUNG	1	1	0.219	FALSE	499	1288	110	792	0	FALSE	ACH-000781
NCIH2023_LUNG	PBK--MTUS1	8	5	PBK	1444	chr8:27695169:-	MTUS1	39409	chr8:17513574:-	ONLY_REF_SPLICE	YES	263	28	0.05	0.32	0.0834	0.0521	PBK->PDZ_binding_kinase,chr8:27667137-27695612:-,MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1	NCIH2023_LUNG	0.05	0.32	0.1355	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	RP11-680G10.1--GSE1	9	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	34	1	0.23	0.0939	0.0104	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2023_LUNG	0.23	1	0.1043	TRUE	465	1949	224	605	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-ND5--MT-ATP8	7	7	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0.073	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2023_LUNG	1	1	0.146	FALSE	43	37	8	105	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-ND6--MT-TE	4	19	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0417	0.1981	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2023_LUNG	0.92	1	0.2398	FALSE	499	1288	110	792	0	FALSE	ACH-000781
NCIH2023_LUNG	CTD-3116E22.6--ZNF274	8	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	NCIH2023_LUNG	1	1	0.0834	TRUE	0	0	0	13	0	TRUE	ACH-000781
NCIH2023_LUNG	FTL--MT-CO1	8	0	FTL	1129	chr19:49468686:+	MT-CO1	6014	chrM:6339:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2023_LUNG	1	1	0.0834	FALSE	0	7	0	14	0	FALSE	ACH-000781
NCIH2023_LUNG	MIPEPP3--ABHD12	8	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	NCIH2023_LUNG	1	1	0.0834	TRUE	64	202	9	44	0	FALSE	ACH-000781
NCIH2023_LUNG	NRG1--SCARA5	7	2	NRG1	2344	chr8:31498245:+	SCARA5	37908	chr8:27737283:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.073	0.0209	NRG1->chr8:31496902-32622548:+,neuregulin_1,SCARA5->chr8:27727399-27850244:-,scavenger_receptor_class_A_member_5	NCIH2023_LUNG	1	1	0.0939	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	CASC9--RP11-300E4.2	7	1	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	56	0	0.12	1	0.073	0.0104	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH2023_LUNG	0.12	1	0.0834	TRUE	0	23	0	19	23	TRUE	ACH-000781
NCIH2023_LUNG	KIF13B--MTMR7	7	1	KIF13B	3339	chr8:29102863:-	MTMR7	53286	chr8:17230749:-	ONLY_REF_SPLICE	YES	7	0	0.53	1	0.073	0.0104	KIF13B->chr8:28924796-29120641:-,kinesin_family_member_13B,MTMR7->chr8:17155539-17271037:-,myotubularin_related_protein_7	NCIH2023_LUNG	0.53	1	0.0834	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	FTL--MT-CO1	7	0	FTL	1122	chr19:49468679:+	MT-CO1	6221	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2023_LUNG	1	1	0.073	FALSE	0	7	0	14	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-ND6--MT-TE	3	16	MT-ND6	1096	chrM:14578:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0.1668	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2023_LUNG	1	1	0.1981	FALSE	499	1288	110	792	0	FALSE	ACH-000781
NCIH2023_LUNG	RP11-168O22.1--PCDH15	7	0	RP11-168O22.1	2183	chr10:57335410:-	PCDH15	16402	chr10:56287637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.073	0	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	NCIH2023_LUNG	1	1	0.073	TRUE	0	0	0	1	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-CO2--MT-CO1	6	3	MT-CO2	1222	chrM:7807:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13	14895	0.41	0	0.0626	0.0313	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2023_LUNG	0	0.41	0.0939	FALSE	36	10	0	27	0	FALSE	ACH-000781
NCIH2023_LUNG	C15orf57--CBX3	5	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	13	41	0.43	0.2	0.0521	0.0521	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2023_LUNG	0.2	0.43	0.1042	TRUE	267	562	48	632	0	FALSE	ACH-000781
NCIH2023_LUNG	FTL--ENO1	6	0	FTL	1104	chr19:49468661:+	ENO1	6216	chr1:8938671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0626	0	GTEx&tcga_normals:2/3694=0.05%,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	NCIH2023_LUNG	1	1	0.0626	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	MT-TA--MT-TC	5	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0.0417	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2023_LUNG	1	1	0.0938	FALSE	462	80	0	856	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-CO2--MT-CO1	3	11	MT-CO2	1356	chrM:7941:+	MT-CO1	4659	chrM:5878:+	INCL_NON_REF_SPLICE	YES	10	0	0.58	1	0.0313	0.1147	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2023_LUNG	0.58	1	0.146	FALSE	33	9	0	27	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-CO2--MT-CO1	3	10	MT-CO2	1493	chrM:8078:+	MT-CO1	5625	chrM:6844:+	INCL_NON_REF_SPLICE	YES	6	5214	0.68	0	0.0313	0.1043	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2023_LUNG	0	0.68	0.1356	FALSE	36	10	0	27	0	FALSE	ACH-000781
NCIH2023_LUNG	ATOX1--ARSI	4	5	ATOX1	5168	chr5:151131265:-	ARSI	16416	chr5:149678175:-	ONLY_REF_SPLICE	YES	146	3	0.06	0.75	0.0417	0.0521	ATOX1->antioxidant_1_copper_chaperone,chr5:151121877-151152093:-,ARSI->arylsulfatase_family_member_I,chr5:149675906-149718870:-	NCIH2023_LUNG	0.06	0.75	0.0938	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	MT-CO2--MT-CO1	4	5	MT-CO2	1256	chrM:7841:+	MT-CO1	5313	chrM:6532:+	INCL_NON_REF_SPLICE	YES	12	13558	0.43	0	0.0417	0.0521	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2023_LUNG	0	0.43	0.0938	FALSE	36	10	0	27	0	FALSE	ACH-000781
NCIH2023_LUNG	FTL--ENO1	5	0	FTL	1095	chr19:49468652:+	ENO1	6208	chr1:8938679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0521	0	GTEx&tcga_normals:2/3694=0.05%,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	NCIH2023_LUNG	1	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	MT-CO2--MT-CO1	3	8	MT-CO2	1359	chrM:7944:+	MT-CO1	5335	chrM:6554:+	INCL_NON_REF_SPLICE	YES	10	15103	0.52	0	0.0313	0.0834	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2023_LUNG	0	0.52	0.1147	FALSE	36	10	0	27	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-ND5--MT-ATP8	3	8	MT-ND5	2795	chrM:14131:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0.0834	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2023_LUNG	1	1	0.1147	FALSE	43	37	8	105	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-ND5--MT-ATP8	4	4	MT-ND5	2712	chrM:14048:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	YES	13	3	0.38	0.73	0.0417	0.0417	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2023_LUNG	0.38	0.73	0.0834	FALSE	43	37	8	105	0	FALSE	ACH-000781
NCIH2023_LUNG	RP11-168O22.1--PCDH15	5	0	RP11-168O22.1	3305	chr10:57125852:-	PCDH15	16402	chr10:56287637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0521	0	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	NCIH2023_LUNG	1	1	0.0521	TRUE	0	0	0	1	0	FALSE	ACH-000781
NCIH2023_LUNG	UBE2H--ZC3HC1	5	0	UBE2H	2497	chr7:129591118:-	ZC3HC1	21402	chr7:129688984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0521	0	LOCAL_REARRANGEMENT:-:[65337],UBE2H->chr7:129470572-129592789:-,ubiquitin_conjugating_enzyme_E2_H,ZC3HC1->chr7:129658126-129691291:-,zinc_finger_C3HC-type_containing_1	NCIH2023_LUNG	1	1	0.0521	TRUE	0	0	0	2	0	TRUE	ACH-000781
NCIH2023_LUNG	ELOVL5--PKHD1	2	11	ELOVL5	1800	chr6:53213148:-	PKHD1	47010	chr6:51900519:-	ONLY_REF_SPLICE	YES	301	5	0.04	0.72	0.0209	0.1147	ELOVL5->ELOVL_fatty_acid_elongase_5,Oncogene{Bushman},chr6:53132196-53213947:-,PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)	NCIH2023_LUNG	0.04	0.72	0.1356	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	MT-ND5--MT-ATP8	4	3	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7	5	0.5	0.58	0.0417	0.0313	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2023_LUNG	0.5	0.58	0.073	FALSE	43	37	8	105	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-ND5--MT-ATP8	4	3	MT-ND5	2687	chrM:14023:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	551	5	0.01	0.58	0.0417	0.0313	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2023_LUNG	0.01	0.58	0.073	FALSE	43	37	8	105	0	FALSE	ACH-000781
NCIH2023_LUNG	AGFG1--COL4A3	4	2	AGFG1	2531	chr2:228356356:+	COL4A3	57883	chr2:228153866:+	ONLY_REF_SPLICE	YES	99	10	0.06	0.38	0.0417	0.0209	AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,COL4A3->Oncogene{Bushman},chr2:228029281-228179508:+,collagen_type_IV_alpha_3	NCIH2023_LUNG	0.06	0.38	0.0626	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	FTL--MT-CO1	4	1	FTL	2364	chr19:49469921:+	MT-CO1	6488	chrM:6813:+	INCL_NON_REF_SPLICE	NO	7651	15820	0	0	0.0417	0.0104	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2023_LUNG	0	0	0.0521	FALSE	0	1	0	1	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-CO2--MT-CO1	3	5	MT-CO2	1282	chrM:7867:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	9	12918	0.47	0	0.0313	0.0521	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2023_LUNG	0	0.47	0.0834	FALSE	36	10	0	27	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-ND6--MT-TE	3	5	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0.0521	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2023_LUNG	1	1	0.0834	FALSE	499	1288	110	792	0	FALSE	ACH-000781
NCIH2023_LUNG	NRIP1--AF127936.7	4	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.2	1	0.0417	0.0104	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2023_LUNG	0.2	1	0.0521	FALSE	164	806	69	479	0	FALSE	ACH-000781
NCIH2023_LUNG	PLEKHG2--MED29	1	13	PLEKHG2	5416	chr19:39907640:+	MED29	22637	chr19:39888167:+	ONLY_REF_SPLICE	NO	32	70	0.3	0.17	0.0104	0.1356	LOCAL_REARRANGEMENT:+:[11948],PLEKHG2->Oncogene{Bushman},chr19:39903225-39919054:+,pleckstrin_homology_and_RhoGEF_domain_containing_G2,MED29->chr19:39881943-39891277:+,mediator_complex_subunit_29	NCIH2023_LUNG	0.17	0.3	0.146	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	PRELID2--LARS	4	1	PRELID2	1193	chr5:145214740:-	LARS	26526	chr5:145547828:-	ONLY_REF_SPLICE	YES	12	100	0.29	0.05	0.0417	0.0104	{Klijn_CCL:Lung=1},PRELID2->PRELI_domain_containing_2,chr5:144851362-145214932:-,LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase	NCIH2023_LUNG	0.05	0.29	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	RP11-168O22.1--PCDH15	4	1	RP11-168O22.1	3305	chr10:57125852:-	PCDH15	9774	chr10:56926411:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0417	0.0104	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	NCIH2023_LUNG	0.83	1	0.0521	TRUE	14	7	0	7	0	FALSE	ACH-000781
NCIH2023_LUNG	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	17	1	0.23	0.0417	0.0104	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2023_LUNG	0.23	1	0.0521	TRUE	458	1351	185	561	0	FALSE	ACH-000781
NCIH2023_LUNG	ATOX1--CAMK2A	4	0	ATOX1	5168	chr5:151131265:-	CAMK2A	13985	chr5:149669286:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0	ATOX1->antioxidant_1_copper_chaperone,chr5:151121877-151152093:-,CAMK2A->calcium/calmodulin_dependent_protein_kinase_II_alpha,chr5:149599054-149669854:-	NCIH2023_LUNG	1	1	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	ATP5B--HSP90AB1	4	0	ATP5B	1844	chr12:57038955:-	HSP90AB1	15488	chr6:44219736:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0	ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-,HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1	NCIH2023_LUNG	1	1	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	CTD-2152M20.2--GOLPH3	4	0	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	NCIH2023_LUNG	1	1	0.0417	TRUE	10	26	2	24	0	FALSE	ACH-000781
NCIH2023_LUNG	FTL--MT-CO1	4	0	FTL	1134	chr19:49468691:+	MT-CO1	6232	chrM:6557:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0417	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2023_LUNG	1	1	0.0417	FALSE	0	7	0	14	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-CO2--MT-CO1	3	4	MT-CO2	1278	chrM:7863:+	MT-CO1	5602	chrM:6821:+	INCL_NON_REF_SPLICE	YES	9	6246	0.44	0	0.0313	0.0417	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2023_LUNG	0	0.44	0.073	FALSE	36	10	0	27	0	FALSE	ACH-000781
NCIH2023_LUNG	RP11-268G12.1--NR0B1	4	0	RP11-268G12.1	1247	chrX:27416868:-	NR0B1	17355	chrX:30322940:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0	RP11-268G12.1->chrX:27193037-27417114:-,NR0B1->chrX:30322323-30327715:-,nuclear_receptor_subfamily_0_group_B_member_1	NCIH2023_LUNG	1	1	0.0417	TRUE	0	1	0	3	1	TRUE	ACH-000781
NCIH2023_LUNG	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0.0417	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2023_LUNG	1	1	0.073	FALSE	275	511	55	178	0	FALSE	ACH-000781
NCIH2023_LUNG	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0.0417	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2023_LUNG	1	1	0.073	FALSE	407	2205	196	549	0	FALSE	ACH-000781
NCIH2023_LUNG	GALNT10--SAP30L-AS1	3	2	GALNT10	8072	chr5:153709298:+	SAP30L-AS1	37266	chr5:153709517:-	ONLY_REF_SPLICE	YES	159	0	0.03	1	0.0313	0.0209	NEIGHBORS_OVERLAP:+:-:[91547],GALNT10->chr5:153570290-153800544:+,polypeptide_N-acetylgalactosaminyltransferase_10,SAP30L-AS1->SAP30L_antisense_RNA_1_(head_to_head),chr5:153708997-153825410:-	NCIH2023_LUNG	0.03	1	0.0522	FALSE	0	0	0	1	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-TA--MT-TC	3	2	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0.0209	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2023_LUNG	1	1	0.0522	FALSE	462	80	0	856	0	FALSE	ACH-000781
NCIH2023_LUNG	CASC9--RP11-300E4.2	3	0	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH2023_LUNG	1	1	0.0313	TRUE	0	12	0	10	12	TRUE	ACH-000781
NCIH2023_LUNG	LINC01036--LINC01037	3	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	NCIH2023_LUNG	1	1	0.0313	FALSE	0	26	0	50	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1046	chrM:14628:-	MT-TE	4575	chrM:14693:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2023_LUNG	1	1	0.0313	FALSE	499	1288	110	792	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2023_LUNG	1	1	0.0313	FALSE	499	1288	110	792	0	FALSE	ACH-000781
NCIH2023_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0313	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2023_LUNG	1	1	0.0313	FALSE	499	1288	110	792	0	FALSE	ACH-000781
NCIH2023_LUNG	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0209	0.0417	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2023_LUNG	1	1	0.0626	FALSE	192	492	57	212	0	FALSE	ACH-000781
NCIH2023_LUNG	TFG--GPR128	1	8	TFG	1361	chr3:100428565:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	487	0	0.02	1	0.0104	0.0834	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	NCIH2023_LUNG	0.02	1	0.0938	TRUE	0	0	0	1	0	FALSE	ACH-000781
NCIH2023_LUNG	CTD-2336H13.2--MON1B	2	1	CTD-2336H13.2	1138	chr16:76770376:+	MON1B	7108	chr16:77225373:+	ONLY_REF_SPLICE	YES	0	20	1	0.13	0.0209	0.0104	CTD-2336H13.2->chr16:76770239-76962066:+,MON1B->MON1_homolog_B,_secretory_trafficking_associated,chr16:77224732-77236302:+	NCIH2023_LUNG	0.13	1	0.0313	TRUE	0	5	0	2	5	TRUE	ACH-000781
NCIH2023_LUNG	NPC1--ANKRD29	2	1	NPC1	6485	chr18:21148787:-	ANKRD29	49911	chr18:21181273:-	ONLY_REF_SPLICE	YES	193	38	0.02	0.07	0.0209	0.0104	LOCAL_REARRANGEMENT:-:[12028],NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-,ANKRD29->ankyrin_repeat_domain_29,chr18:21178890-21242849:-	NCIH2023_LUNG	0.02	0.07	0.0313	TRUE	0	0	0	1	0	FALSE	ACH-000781
NCIH2023_LUNG	ANO7--HDLBP	2	0	ANO7	20467	chr2:242157796:+	HDLBP	44590	chr2:242189395:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_FI:{Brain=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[1887],ANO7->anoctamin_7,chr2:242127924-242164792:+,HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein	NCIH2023_LUNG	1	1	0.0209	TRUE	0	0	0	2	0	TRUE	ACH-000781
NCIH2023_LUNG	ATOX1--CAMK2A	2	0	ATOX1	2364	chr5:151138107:-	CAMK2A	13985	chr5:149669286:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	ATOX1->antioxidant_1_copper_chaperone,chr5:151121877-151152093:-,CAMK2A->calcium/calmodulin_dependent_protein_kinase_II_alpha,chr5:149599054-149669854:-	NCIH2023_LUNG	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	CTD-2152M20.2--GOLPH3	2	0	CTD-2152M20.2	1447	chr5:32121601:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	NCIH2023_LUNG	1	1	0.0209	TRUE	6	16	0	6	0	FALSE	ACH-000781
NCIH2023_LUNG	CYP24A1--ASPH	2	0	CYP24A1	10936	chr20:52773708:-	ASPH	58327	chr8:62416068:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	NCIH2023_LUNG	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	LINC01036--LINC01037	2	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	NCIH2023_LUNG	1	1	0.0209	FALSE	0	24	0	62	0	FALSE	ACH-000781
NCIH2023_LUNG	RHOA--DAG1	2	0	RHOA	2179	chr3:49449253:-	DAG1	21789	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[55715],RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,DAG1->chr3:49506146-49573048:+,dystroglycan_1	NCIH2023_LUNG	1	1	0.0209	TRUE	0	0	0	8	0	TRUE	ACH-000781
NCIH2023_LUNG	RP11-168O22.1--PCDH15	2	0	RP11-168O22.1	1121	chr10:57356873:-	PCDH15	16402	chr10:56287637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	NCIH2023_LUNG	1	1	0.0209	TRUE	0	0	0	1	0	FALSE	ACH-000781
NCIH2023_LUNG	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0104	0.0417	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2023_LUNG	1	1	0.0521	FALSE	467	2173	244	435	0	FALSE	ACH-000781
NCIH2023_LUNG	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0104	0.0417	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2023_LUNG	1	1	0.0521	FALSE	515	4851	409	746	0	FALSE	ACH-000781
NCIH2023_LUNG	STPG2--RP11-681L8.1	2	0	STPG2	12562	chr4:98633850:-	RP11-681L8.1	27254	chr4:98313879:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_FI:{Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2,RP11-681L8.1->chr4:98255786-98554974:-	NCIH2023_LUNG	1	1	0.0209	TRUE	3	9	9	1	0	FALSE	ACH-000781
NCIH2023_LUNG	TCTN3--MON2	2	0	TCTN3	2224	chr10:97452677:-	MON2	16968	chr12:62877950:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	TCTN3->chr10:97423158-97453900:-,tectonic_family_member_3,MON2->MON2_homolog,_regulator_of_endosome-to-Golgi_trafficking,chr12:62860597-62991363:+	NCIH2023_LUNG	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	AC002066.1--AC073130.1	1	1	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0104	0.0104	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	NCIH2023_LUNG	0.67	1	0.0208	FALSE	0	3	0	33	0	FALSE	ACH-000781
NCIH2023_LUNG	DENND4A--MEGF11	1	1	DENND4A	15384	chr15:66007816:-	MEGF11	45868	chr15:66274826:-	ONLY_REF_SPLICE	NO	20	0	0.09	1	0.0104	0.0104	DENND4A->DENN_domain_containing_4A,chr15:65950384-66084631:-,MEGF11->chr15:66187417-66546085:-,multiple_EGF_like_domains_11	NCIH2023_LUNG	0.09	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000781
NCIH2023_LUNG	DPM2--FAM102A	1	1	DPM2	2932	chr9:130698832:-	FAM102A	12839	chr9:130712818:-	ONLY_REF_SPLICE	YES	219	82	0.01	0.02	0.0104	0.0104	NUCLCLUST,LOCAL_REARRANGEMENT:-:[2095],DPM2->chr9:130697378-130700763:-,dolichyl-phosphate_mannosyltransferase_polypeptide_2,_regulatory_subunit,FAM102A->chr9:130702858-130742792:-,family_with_sequence_similarity_102_member_A	NCIH2023_LUNG	0.01	0.02	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000781
NCIH2023_LUNG	GPR126--VTA1	1	1	GPR126	2987	chr6:142630781:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	YES	253	168	0.01	0.01	0.0104	0.0104	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	NCIH2023_LUNG	0.01	0.01	0.0208	FALSE	0	2	0	15	1	FALSE	ACH-000781
NCIH2023_LUNG	NRP1--PARD3	1	1	NRP1	4012	chr10:33619636:-	PARD3	45004	chr10:34673182:-	ONLY_REF_SPLICE	YES	87	60	0.02	0.03	0.0104	0.0104	GTEx_FI:{Nerve=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Kidney=[count:1=pct:7.1],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Kidney_-_Cortex=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Lung=1},NRP1->chr10:33466420-33625190:-,neuropilin_1,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	NCIH2023_LUNG	0.02	0.03	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000781
NCIH2023_LUNG	RP11-168O22.1--PCDH15	1	1	RP11-168O22.1	2183	chr10:57335410:-	PCDH15	9774	chr10:56926411:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0104	0.0104	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	NCIH2023_LUNG	0.5	1	0.0208	TRUE	18	36	1	9	0	FALSE	ACH-000781
CAL12T_LUNG	TIMM23B--LINC00843	114	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2655	0.2886	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAL12T_LUNG	1	1	1.5541	TRUE	508	994	45	981	0	FALSE	ACH-000826
CAL12T_LUNG	TIMM23--RP11-464F9.1	68	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	185	2	0.27	0.97	0.7548	0.0111	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAL12T_LUNG	0.27	0.97	0.7659	TRUE	519	3926	326	965	0	FALSE	ACH-000826
CAL12T_LUNG	MT-TA--MT-TN	58	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6438	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL12T_LUNG	1	1	0.6438	FALSE	369	2501	205	193	0	FALSE	ACH-000826
CAL12T_LUNG	CAMSAP1--PI4KA	36	8	CAMSAP1	3654	chr9:138773479:-	PI4KA	50980	chr22:21107468:-	ONLY_REF_SPLICE	YES	21	99	0.68	0.31	0.3996	0.0888	CAMSAP1->calmodulin_regulated_spectrin_associated_protein_1,chr9:138700333-138799074:-,PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha	CAL12T_LUNG	0.31	0.68	0.4884	TRUE	0	0	0	1	0	TRUE	ACH-000826
CAL12T_LUNG	MT-ND6--MT-TE	30	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.333	0.0555	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL12T_LUNG	1	1	0.3885	FALSE	499	1288	110	792	0	FALSE	ACH-000826
CAL12T_LUNG	MT-TA--MT-TC	23	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2553	0.0111	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL12T_LUNG	1	1	0.2664	FALSE	462	80	0	856	0	FALSE	ACH-000826
CAL12T_LUNG	MT-TA--MT-TN	22	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2442	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL12T_LUNG	1	1	0.2442	FALSE	369	2501	205	193	0	FALSE	ACH-000826
CAL12T_LUNG	MT-ND6--MT-TE	19	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2109	0.0888	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL12T_LUNG	1	1	0.2997	FALSE	499	1288	110	792	0	FALSE	ACH-000826
CAL12T_LUNG	MT-ND6--MT-TE	14	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1554	0.1665	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL12T_LUNG	1	1	0.3219	FALSE	499	1288	110	792	0	FALSE	ACH-000826
CAL12T_LUNG	VMP1--RPS6KB1	16	0	VMP1	1557	chr17:57785109:+	RPS6KB1	26422	chr17:57987923:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1776	0	NEIGHBORS[50831],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	CAL12T_LUNG	1	1	0.1776	FALSE	0	1	0	2	0	FALSE	ACH-000826
CAL12T_LUNG	NPM1P24--SET	15	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1665	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CAL12T_LUNG	1	1	0.1665	TRUE	0	0	0	434	0	FALSE	ACH-000826
CAL12T_LUNG	USP12--SRCAP	13	7	USP12	3600	chr13:27679868:-	SRCAP	27264	chr16:30727387:+	ONLY_REF_SPLICE	YES	43	22	0.32	0.48	0.1443	0.0777	{Klijn_CCL:Lung=1},USP12->chr13:27640293-27746033:-,ubiquitin_specific_peptidase_12,SRCAP->Snf2-related_CREBBP_activator_protein,chr16:30709530-30755602:+	CAL12T_LUNG	0.32	0.48	0.222	TRUE	0	0	0	1	0	TRUE	ACH-000826
CAL12T_LUNG	MT-TA--MT-TN	5	35	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0555	0.3885	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL12T_LUNG	1	1	0.444	FALSE	369	2501	205	193	0	FALSE	ACH-000826
CAL12T_LUNG	MT-ND6--MT-TE	9	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0999	0.1554	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL12T_LUNG	1	1	0.2553	FALSE	499	1288	110	792	0	FALSE	ACH-000826
CAL12T_LUNG	RP11-680G10.1--GSE1	12	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1332	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAL12T_LUNG	1	1	0.1332	TRUE	458	1351	185	561	0	FALSE	ACH-000826
CAL12T_LUNG	MT-TA--MT-TN	4	29	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0444	0.3219	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL12T_LUNG	1	1	0.3663	FALSE	369	2501	205	193	0	FALSE	ACH-000826
CAL12T_LUNG	MT-TA--MT-TN	5	24	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0.2664	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL12T_LUNG	1	1	0.3219	FALSE	369	2501	205	193	0	FALSE	ACH-000826
CAL12T_LUNG	MT-TA--MT-TN	11	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1221	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL12T_LUNG	1	1	0.1221	FALSE	369	2501	205	193	0	FALSE	ACH-000826
CAL12T_LUNG	MT-ND6--MT-TE	3	29	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0.3219	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL12T_LUNG	1	1	0.3552	FALSE	499	1288	110	792	0	FALSE	ACH-000826
CAL12T_LUNG	MT-ND6--MT-TE	4	23	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0444	0.2553	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL12T_LUNG	1	1	0.2997	FALSE	499	1288	110	792	0	FALSE	ACH-000826
CAL12T_LUNG	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0999	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL12T_LUNG	1	1	0.0999	FALSE	13	9	0	364	0	FALSE	ACH-000826
CAL12T_LUNG	RP11-96H19.1--RP11-446N19.1	7	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0777	0.0333	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL12T_LUNG	0.77	1	0.111	FALSE	515	4851	409	746	0	FALSE	ACH-000826
CAL12T_LUNG	MT-TA--MT-TN	5	10	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0.111	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL12T_LUNG	1	1	0.1665	FALSE	369	2501	205	193	0	FALSE	ACH-000826
CAL12T_LUNG	SLK--DAB2	7	1	SLK	1695	chr10:105727653:+	DAB2	34085	chr5:39394523:-	ONLY_REF_SPLICE	YES	46	1	0.15	0.89	0.0777	0.0111	SLK->STE20_like_kinase,chr10:105726959-105788991:+,DAB2->DAB2,_clathrin_adaptor_protein,Oncogene{Bushman},chr5:39371780-39462402:-	CAL12T_LUNG	0.15	0.89	0.0888	TRUE	0	0	0	1	0	TRUE	ACH-000826
CAL12T_LUNG	RP11-680G10.1--GSE1	7	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0777	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CAL12T_LUNG	1	1	0.0777	TRUE	465	1949	224	605	0	FALSE	ACH-000826
CAL12T_LUNG	FTH1--ACTB	6	3	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	5419	3	0	0.75	0.0666	0.0333	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	CAL12T_LUNG	0	0.75	0.0999	FALSE	1	0	0	97	0	FALSE	ACH-000826
CAL12T_LUNG	MT-TA--MT-TC	6	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0666	0.0111	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL12T_LUNG	1	1	0.0777	FALSE	462	80	0	856	0	FALSE	ACH-000826
CAL12T_LUNG	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0666	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL12T_LUNG	1	1	0.0666	FALSE	13	9	0	364	0	FALSE	ACH-000826
CAL12T_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0666	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL12T_LUNG	1	1	0.0666	FALSE	499	1288	110	792	0	FALSE	ACH-000826
CAL12T_LUNG	MT-TA--MT-TN	6	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0666	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL12T_LUNG	1	1	0.0666	FALSE	369	2501	205	193	0	FALSE	ACH-000826
CAL12T_LUNG	TUBB4B--FTH1	6	0	TUBB4B	1128	chr9:140135792:+	FTH1	6697	chr11:61734931:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0666	0	TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	CAL12T_LUNG	1	1	0.0666	TRUE	0	0	0	6	0	TRUE	ACH-000826
CAL12T_LUNG	MT-TA--MT-TN	3	10	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0.111	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAL12T_LUNG	1	1	0.1443	FALSE	369	2501	205	193	0	FALSE	ACH-000826
CAL12T_LUNG	RP11-96H19.1--RP11-446N19.1	4	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0444	0.0666	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL12T_LUNG	0.77	1	0.111	FALSE	407	2205	196	549	0	FALSE	ACH-000826
CAL12T_LUNG	FTH1--ACTB	4	3	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	5483	2	0	0.78	0.0444	0.0333	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	CAL12T_LUNG	0	0.78	0.0777	FALSE	1	0	0	97	0	FALSE	ACH-000826
CAL12T_LUNG	PFKL--MT-ND4L	3	6	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	413	0	0.02	1	0.0333	0.0666	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL12T_LUNG	0.02	1	0.0999	FALSE	0	0	0	33	0	FALSE	ACH-000826
CAL12T_LUNG	CAMSAP1--PI4KA	4	0	CAMSAP1	1229	chr9:138798846:-	PI4KA	50980	chr22:21107468:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0444	0	CAMSAP1->calmodulin_regulated_spectrin_associated_protein_1,chr9:138700333-138799074:-,PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha	CAL12T_LUNG	1	1	0.0444	TRUE	0	0	0	1	0	TRUE	ACH-000826
CAL12T_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0444	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL12T_LUNG	1	1	0.0444	FALSE	499	1288	110	792	0	FALSE	ACH-000826
CAL12T_LUNG	PTGES3--MT-ND4L	4	0	PTGES3	1363	chr12:57081797:-	MT-ND4L	12459	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0444	0	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL12T_LUNG	1	1	0.0444	FALSE	0	0	0	4	0	FALSE	ACH-000826
CAL12T_LUNG	HSP90AB1--MT-RNR2	3	0	HSP90AB1	7260	chr6:44221083:+	MT-RNR2	10826	chrM:1699:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL12T_LUNG	1	1	0.0333	FALSE	13	9	0	364	0	FALSE	ACH-000826
CAL12T_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL12T_LUNG	1	1	0.0333	FALSE	499	1288	110	792	0	FALSE	ACH-000826
CAL12T_LUNG	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL12T_LUNG	1	1	0.0333	FALSE	462	80	0	856	0	FALSE	ACH-000826
CAL12T_LUNG	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0333	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CAL12T_LUNG	1	1	0.0333	TRUE	0	0	0	434	0	FALSE	ACH-000826
CAL12T_LUNG	C17orf76-AS1--ANXA2	2	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	CAL12T_LUNG	1	1	0.0222	TRUE	0	0	0	10	0	TRUE	ACH-000826
CAL12T_LUNG	LRBA--FAT1	2	0	LRBA	16251	chr4:151817546:-	FAT1	81221	chr4:187560937:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0222	0	LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-,FAT1->ArcherDX_panel,FAT_atypical_cadherin_1,FoundationOne_panel,Oncogene{Bushman},chr4:187508937-187647876:-	CAL12T_LUNG	1	1	0.0222	TRUE	0	0	0	1	0	TRUE	ACH-000826
CAL12T_LUNG	RPLP1--KIF23	1	1	RPLP1	1938	chr15:69746060:+	KIF23	10564	chr15:69713986:+	ONLY_REF_SPLICE	YES	3865	118	0	0.02	0.0111	0.0111	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[4359],RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,KIF23->chr15:69706585-69740764:+,kinesin_family_member_23	CAL12T_LUNG	0	0.02	0.0222	FALSE	0	0	0	1	0	FALSE	ACH-000826
CAL12T_LUNG	ZFR--GOLPH3	1	1	ZFR	2816	chr5:32419926:-	GOLPH3	28918	chr5:32143986:-	ONLY_REF_SPLICE	YES	70	76	0.03	0.03	0.0111	0.0111	ZFR->chr5:32354456-32444867:-,zinc_finger_RNA_binding_protein,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	CAL12T_LUNG	0.03	0.03	0.0222	TRUE	0	1	0	1	0	FALSE	ACH-000826
CL11_LARGE_INTESTINE	AC104389.28--HBE1	202	0	AC104389.28	1084	chr11:5526799:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.9948	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CL11_LARGE_INTESTINE	1	1	1.9948	TRUE	0	16	0	53	13	FALSE	ACH-000249
CL11_LARGE_INTESTINE	AC104389.28--HBE1	146	73	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	6	0	0.97	1	1.4418	0.7209	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CL11_LARGE_INTESTINE	0.97	1	2.1627	TRUE	0	48	0	65	48	FALSE	ACH-000249
CL11_LARGE_INTESTINE	SLC16A3--NF1	156	33	SLC16A3	1710	chr17:80186982:+	NF1	20232	chr17:29486028:+	ONLY_REF_SPLICE	YES	105	51	0.64	0.79	1.5405	0.3259	SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3,NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1	CL11_LARGE_INTESTINE	0.64	0.79	1.8664	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	GATA6--DSG1	149	36	GATA6	7167	chr18:19763004:+	DSG1	27245	chr18:28934260:+	ONLY_REF_SPLICE	YES	1	0	0.99	1	1.4714	0.3555	{Klijn_CCL:Colo-Rectal=1},GATA6->ArcherDX_panel,FoundationOne_panel,GATA_binding_protein_6,Oncogene{Bushman},chr18:19749404-19782491:+,DSG1->chr18:28898052-28936992:+,desmoglein_1	CL11_LARGE_INTESTINE	0.99	1	1.8269	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	TIMM23B--LINC00843	136	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.343	0.2765	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CL11_LARGE_INTESTINE	1	1	1.6195	TRUE	508	994	45	981	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	NF1--PLXDC1	77	39	NF1	5912	chr17:29490394:+	PLXDC1	106808	chr17:37220166:-	INCL_NON_REF_SPLICE	YES	51	7	0.69	0.94	0.7604	0.3851	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1	CL11_LARGE_INTESTINE	0.69	0.94	1.1455	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	AC006273.5--PALM	75	27	AC006273.5	1576	chr19:783330:+	PALM	18031	chr19:746285:+	ONLY_REF_SPLICE	YES	34	0	0.75	1	0.7406	0.2666	LOCAL_REARRANGEMENT:+:[34426],AC006273.5->chr19:782755-785080:+,PALM->chr19:708953-748329:+,paralemmin	CL11_LARGE_INTESTINE	0.75	1	1.0072	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	TIMM23--RP11-464F9.1	76	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	127	0	0.38	1	0.7505	0.0198	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CL11_LARGE_INTESTINE	0.38	1	0.7703	TRUE	519	3926	326	965	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	SPTLC2--ALKBH1	45	14	SPTLC2	2521	chr14:78063529:-	ALKBH1	30238	chr14:78146313:-	ONLY_REF_SPLICE	YES	109	9	0.35	0.87	0.4444	0.1383	LOCAL_REARRANGEMENT:-:[55631],SPTLC2->chr14:77972340-78083116:-,serine_palmitoyltransferase_long_chain_base_subunit_2,ALKBH1->alkB_homolog_1,_histone_H2A_dioxygenase,chr14:78138747-78174363:-	CL11_LARGE_INTESTINE	0.35	0.87	0.5827	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	MT-TA--MT-TC	39	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3851	0.0494	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CL11_LARGE_INTESTINE	1	1	0.4345	FALSE	462	80	0	856	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	NPM1P24--SET	34	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3358	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CL11_LARGE_INTESTINE	1	1	0.3358	TRUE	0	0	0	434	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	AC104389.28--HBE1	10	76	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	6	0	0.93	1	0.0988	0.7505	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CL11_LARGE_INTESTINE	0.93	1	0.8493	TRUE	0	35	0	55	35	FALSE	ACH-000249
CL11_LARGE_INTESTINE	MT-ND6--MT-TE	24	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.237	0.0691	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL11_LARGE_INTESTINE	1	1	0.3061	FALSE	499	1288	110	792	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	SLC16A3--NF1	18	0	SLC16A3	1133	chr17:80186405:+	NF1	20232	chr17:29486028:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1778	0	SLC16A3->Oncogene{Bushman},chr17:80186273-80219005:+,solute_carrier_family_16_member_3,NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1	CL11_LARGE_INTESTINE	1	1	0.1778	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	AC006273.5--PALM	8	33	AC006273.5	2743	chr19:784953:+	PALM	18031	chr19:746285:+	INCL_NON_REF_SPLICE	YES	11	0	0.79	1	0.079	0.3259	LOCAL_REARRANGEMENT:+:[34426],AC006273.5->chr19:782755-785080:+,PALM->chr19:708953-748329:+,paralemmin	CL11_LARGE_INTESTINE	0.79	1	0.4049	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	AC006273.5--PALM	7	34	AC006273.5	2830	chr19:785040:+	PALM	18031	chr19:746285:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0691	0.3358	LOCAL_REARRANGEMENT:+:[34426],AC006273.5->chr19:782755-785080:+,PALM->chr19:708953-748329:+,paralemmin	CL11_LARGE_INTESTINE	1	1	0.4049	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	NPM1P24--SET	15	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1481	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CL11_LARGE_INTESTINE	1	1	0.1481	TRUE	0	0	0	434	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	AC006273.5--PALM	6	33	AC006273.5	2760	chr19:784970:+	PALM	18031	chr19:746285:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0593	0.3259	LOCAL_REARRANGEMENT:+:[34426],AC006273.5->chr19:782755-785080:+,PALM->chr19:708953-748329:+,paralemmin	CL11_LARGE_INTESTINE	0.97	1	0.3852	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	AC104389.28--HBE1	13	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1284	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CL11_LARGE_INTESTINE	1	1	0.1284	TRUE	0	16	0	53	13	FALSE	ACH-000249
CL11_LARGE_INTESTINE	MT-TA--MT-TC	10	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0988	0.0395	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CL11_LARGE_INTESTINE	1	1	0.1383	FALSE	462	80	0	856	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	MT-ND6--MT-TE	9	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0889	0.0691	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL11_LARGE_INTESTINE	1	1	0.158	FALSE	499	1288	110	792	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	STXBP3--SLC25A24P1	9	7	STXBP3	4135	chr1:109299388:+	SLC25A24P1	26709	chr1:108826862:+	ONLY_REF_SPLICE	YES	69	1	0.19	0.94	0.0889	0.0691	STXBP3->chr1:109289296-109352148:+,syntaxin_binding_protein_3,SLC25A24P1->SLC25A24_pseudogene_1,chr1:108815565-108918572:+	CL11_LARGE_INTESTINE	0.19	0.94	0.158	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	HSP90AB1--MT-RNR2	9	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1517	0	0.01	1	0.0889	0.0296	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CL11_LARGE_INTESTINE	0.01	1	0.1185	FALSE	13	9	0	364	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	ACTR3C--RP11-728K20.1	9	2	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	10	0	0.52	1	0.0889	0.0198	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	CL11_LARGE_INTESTINE	0.52	1	0.1087	TRUE	0	5	0	16	1	FALSE	ACH-000249
CL11_LARGE_INTESTINE	MT-ND6--MT-TE	8	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.079	0.0494	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL11_LARGE_INTESTINE	1	1	0.1284	FALSE	499	1288	110	792	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	MT-ND6--MT-TE	3	24	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0.237	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL11_LARGE_INTESTINE	1	1	0.2666	FALSE	499	1288	110	792	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	RP11-680G10.1--GSE1	9	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0889	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CL11_LARGE_INTESTINE	1	1	0.0889	TRUE	465	1949	224	605	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	9	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0889	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CL11_LARGE_INTESTINE	1	1	0.0889	FALSE	515	4851	409	746	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	NRIP1--AF127936.7	8	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.079	0.0099	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CL11_LARGE_INTESTINE	0.82	1	0.0889	FALSE	292	1546	117	613	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	SLC1A5--MT-ND4L	8	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.079	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL11_LARGE_INTESTINE	1	1	0.079	FALSE	0	0	0	189	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	HSP90AB1--MT-RNR2	7	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1527	0	0.01	1	0.0691	0.0296	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CL11_LARGE_INTESTINE	0.01	1	0.0987	FALSE	13	9	0	364	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	MT-ND6--MT-TE	3	18	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0.1778	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL11_LARGE_INTESTINE	1	1	0.2074	FALSE	499	1288	110	792	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	MT-ND6--MT-TE	3	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0.1679	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL11_LARGE_INTESTINE	1	1	0.1975	FALSE	499	1288	110	792	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	7	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0691	0.0099	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	CL11_LARGE_INTESTINE	1	1	0.079	FALSE	81	155	12	160	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	ST3GAL3--PTPRF	7	1	ST3GAL3	3470	chr1:44202051:+	PTPRF	29329	chr1:44003869:+	ONLY_REF_SPLICE	YES	8	144	0.5	0.05	0.0691	0.0099	LOCAL_REARRANGEMENT:+:[82152],ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F	CL11_LARGE_INTESTINE	0.05	0.5	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0691	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CL11_LARGE_INTESTINE	1	1	0.0691	FALSE	462	80	0	856	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	C15orf57--CBX3	5	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	32	41	0.22	0.18	0.0494	0.0395	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CL11_LARGE_INTESTINE	0.18	0.22	0.0889	TRUE	267	562	48	632	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	SAMD5--SASH1	5	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	5	3	0.55	0.67	0.0494	0.0099	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	CL11_LARGE_INTESTINE	0.55	0.67	0.0593	TRUE	53	396	64	110	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	C15orf57--CBX3	4	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	33	39	0.2	0.17	0.0395	0.0395	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CL11_LARGE_INTESTINE	0.17	0.2	0.079	TRUE	267	562	48	632	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0494	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CL11_LARGE_INTESTINE	1	1	0.0494	TRUE	458	1351	185	561	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	RP11-120D5.1--MID1	4	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	21	0.78	0.25	0.0395	0.0296	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CL11_LARGE_INTESTINE	0.25	0.78	0.0691	FALSE	16	356	14	466	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	CCAT1--CASC8	4	1	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	7	1	0.42	0.83	0.0395	0.0099	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	CL11_LARGE_INTESTINE	0.42	0.83	0.0494	TRUE	0	26	0	18	24	TRUE	ACH-000249
CL11_LARGE_INTESTINE	FTH1--ACTG1	4	1	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	2894	7	0	0.42	0.0395	0.0099	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	CL11_LARGE_INTESTINE	0	0.42	0.0494	FALSE	0	0	0	64	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	MECOM--LRRC31	4	1	MECOM	1283	chr3:169381124:-	LRRC31	35633	chr3:169587660:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0.0099	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,LRRC31->chr3:169556967-169587718:-,leucine_rich_repeat_containing_31	CL11_LARGE_INTESTINE	1	1	0.0494	TRUE	0	4	0	2	4	TRUE	ACH-000249
CL11_LARGE_INTESTINE	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0395	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL11_LARGE_INTESTINE	1	1	0.0395	FALSE	499	1288	110	792	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	RP11-120D5.1--MID1	3	3	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	2	21	0.75	0.22	0.0296	0.0296	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CL11_LARGE_INTESTINE	0.22	0.75	0.0592	FALSE	0	9	0	55	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	ADAP1--SUN1	3	2	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	577	241	0.01	0.02	0.0296	0.0198	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	CL11_LARGE_INTESTINE	0.01	0.02	0.0494	FALSE	16	22	0	27	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.42	1	0.0296	0.0198	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CL11_LARGE_INTESTINE	0.42	1	0.0494	FALSE	125	705	46	456	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	RP11-120D5.1--MID1	3	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	21	0.62	0.19	0.0296	0.0198	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CL11_LARGE_INTESTINE	0.19	0.62	0.0494	FALSE	0	48	1	163	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	ACBD4--CTD-2206N4.4	3	1	ACBD4	3215	chr17:43213320:+	CTD-2206N4.4	15132	chr17:37219675:+	ONLY_REF_SPLICE	YES	37	1	0.1	0.8	0.0296	0.0099	ACBD4->acyl-CoA_binding_domain_containing_4,chr17:43209967-43221548:+,CTD-2206N4.4->chr17:37213272-37269443:+	CL11_LARGE_INTESTINE	0.1	0.8	0.0395	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	ROCK2--AC099344.2	3	1	ROCK2	2753	chr2:11484122:-	AC099344.2	39593	chr2:11498162:-	ONLY_REF_SPLICE	YES	44	0	0.08	1	0.0296	0.0099	LOCAL_REARRANGEMENT:-:[9185],ROCK2->Rho_associated_coiled-coil_containing_protein_kinase_2,chr2:11319887-11488456:-,AC099344.2->chr2:11497641-11505762:-	CL11_LARGE_INTESTINE	0.08	1	0.0395	TRUE	0	0	0	2	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	ST3GAL3--PTPRF	3	1	ST3GAL3	3470	chr1:44202051:+	PTPRF	27014	chr1:43994328:+	ONLY_REF_SPLICE	YES	8	0	0.33	1	0.0296	0.0099	LOCAL_REARRANGEMENT:+:[82152],ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,PTPRF->chr1:43990858-44089343:+,protein_tyrosine_phosphatase,_receptor_type_F	CL11_LARGE_INTESTINE	0.33	1	0.0395	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	ADAP1--C7orf50	3	0	ADAP1	9672	chr7:959605:-	C7orf50	29696	chr7:1049779:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_REARRANGEMENT:-:[41579],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	CL11_LARGE_INTESTINE	1	1	0.0296	TRUE	0	6	0	10	1	TRUE	ACH-000249
CL11_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	3	0	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CL11_LARGE_INTESTINE	1	1	0.0296	FALSE	467	2173	244	435	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	RPSAP52--HMGA2	2	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	6	231	0.4	0.02	0.0198	0.0198	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	CL11_LARGE_INTESTINE	0.02	0.4	0.0396	FALSE	0	59	0	125	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	ACBD4--CTD-2206N4.4	2	1	ACBD4	3882	chr17:43213987:+	CTD-2206N4.4	15132	chr17:37219675:+	ONLY_REF_SPLICE	YES	19	1	0.14	0.75	0.0198	0.0099	ACBD4->acyl-CoA_binding_domain_containing_4,chr17:43209967-43221548:+,CTD-2206N4.4->chr17:37213272-37269443:+	CL11_LARGE_INTESTINE	0.14	0.75	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	ACTR3C--RP11-728K20.1	2	1	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	19906	chr7:149588390:-	ONLY_REF_SPLICE	YES	10	1	0.23	0.75	0.0198	0.0099	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	CL11_LARGE_INTESTINE	0.23	0.75	0.0297	TRUE	3	46	4	12	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	ADAP1--SUN1	2	1	ADAP1	9672	chr7:959605:-	SUN1	48590	chr7:925693:+	ONLY_REF_SPLICE	YES	577	0	0.01	1	0.0198	0.0099	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	CL11_LARGE_INTESTINE	0.01	1	0.0297	FALSE	0	4	0	9	2	FALSE	ACH-000249
CL11_LARGE_INTESTINE	NRIP1--AF127936.7	1	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	9	0	0.4	1	0.0099	0.0494	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CL11_LARGE_INTESTINE	0.4	1	0.0593	FALSE	164	806	69	479	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	ADAP1--SUN1	2	0	ADAP1	2012	chr7:994032:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	CL11_LARGE_INTESTINE	1	1	0.0198	TRUE	0	0	0	3	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	TXNRD1--CHST11	2	0	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	CL11_LARGE_INTESTINE	1	1	0.0198	TRUE	0	2	1	13	2	TRUE	ACH-000249
CL11_LARGE_INTESTINE	ADAP1--SUN1	1	2	ADAP1	9672	chr7:959605:-	SUN1	24014	chr7:872142:+	ONLY_REF_SPLICE	YES	577	12	0.01	0.2	0.0099	0.0198	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	CL11_LARGE_INTESTINE	0.01	0.2	0.0297	FALSE	0	1	0	6	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	ACBD4--CTD-2206N4.4	1	1	ACBD4	3494	chr17:43213599:+	CTD-2206N4.4	15132	chr17:37219675:+	ONLY_REF_SPLICE	YES	24	1	0.08	0.67	0.0099	0.0099	ACBD4->acyl-CoA_binding_domain_containing_4,chr17:43209967-43221548:+,CTD-2206N4.4->chr17:37213272-37269443:+	CL11_LARGE_INTESTINE	0.08	0.67	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000249
CL11_LARGE_INTESTINE	CCAT1--CASC8	1	1	CCAT1	1279	chr8:128231055:-	CASC8	12971	chr8:128433208:-	ONLY_REF_SPLICE	YES	7	2	0.22	0.5	0.0099	0.0099	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	CL11_LARGE_INTESTINE	0.22	0.5	0.0198	TRUE	0	7	0	7	7	TRUE	ACH-000249
CL11_LARGE_INTESTINE	DCBLD2--LRRC58	1	1	DCBLD2	5444	chr3:98600384:-	LRRC58	31425	chr3:120054800:-	ONLY_REF_SPLICE	YES	460	35	0	0.05	0.0099	0.0099	DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2,LRRC58->chr3:120043356-120068186:-,leucine_rich_repeat_containing_58	CL11_LARGE_INTESTINE	0	0.05	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	EEF2--CTTN	1	1	EEF2	9099	chr19:3977213:-	CTTN	22784	chr11:70265852:+	ONLY_REF_SPLICE	YES	2192	303	0	0.01	0.0099	0.0099	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin	CL11_LARGE_INTESTINE	0	0.01	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	LARP4B--TAF15	1	1	LARP4B	8341	chr10:909683:-	TAF15	40620	chr17:34163136:+	ONLY_REF_SPLICE	YES	117	253	0.02	0.01	0.0099	0.0099	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},LARP4B->La_ribonucleoprotein_domain_family_member_4B,chr10:855484-977564:-,TAF15->Oncogene{Bushman},TATA-box_binding_protein_associated_factor_15,chr17:34136459-34191619:+	CL11_LARGE_INTESTINE	0.01	0.02	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	9	1	0.18	0.67	0.0099	0.0099	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CL11_LARGE_INTESTINE	0.18	0.67	0.0198	FALSE	8	57	1	47	0	FALSE	ACH-000249
CL11_LARGE_INTESTINE	SPATS2--GDI2	1	1	SPATS2	15753	chr12:49884514:+	GDI2	35405	chr10:5842668:-	ONLY_REF_SPLICE	NO	57	376	0.03	0.01	0.0099	0.0099	SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	CL11_LARGE_INTESTINE	0.01	0.03	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000249
NCIH510_LUNG	MACF1--HEYL	367	207	MACF1	6636	chr1:39571389:+	HEYL	126928	chr1:40098387:-	ONLY_REF_SPLICE	YES	100	36	0.85	0.94	3.9621	2.2347	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,HEYL->chr1:40089825-40105617:-,hes_related_family_bHLH_transcription_factor_with_YRPW_motif-like	NCIH510_LUNG	0.85	0.94	6.1968	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TWSG1--PIK3C3	265	72	TWSG1	3414	chr18:9360069:+	PIK3C3	47788	chr18:39661087:+	ONLY_REF_SPLICE	YES	110	24	0.75	0.93	2.8609	0.7773	TWSG1->chr18:9334765-9402418:+,twisted_gastrulation_BMP_signaling_modulator_1,PIK3C3->chr18:39535171-39667794:+,phosphatidylinositol_3-kinase_catalytic_subunit_type_3	NCIH510_LUNG	0.75	0.93	3.6382	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	SMEK1--HEATR3	220	48	SMEK1	2049	chr14:91975850:-	HEATR3	33620	chr16:50128616:+	ONLY_REF_SPLICE	YES	71	54	0.79	0.83	2.3751	0.5182	{Klijn_CCL:Lung=1},SMEK1->chr14:91923955-91976898:-,HEATR3->HEAT_repeat_containing_3,chr16:50099852-50140298:+	NCIH510_LUNG	0.79	0.83	2.8933	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TIMM23B--LINC00843	93	39	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.004	0.421	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH510_LUNG	1	1	1.425	TRUE	508	994	45	981	0	FALSE	ACH-000871
NCIH510_LUNG	KIAA1958--HSDL2	96	26	KIAA1958	1272	chr9:115249398:+	HSDL2	32584	chr9:115221729:+	ONLY_REF_SPLICE	YES	4	81	0.97	0.6	1.0364	0.2807	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:+:[14437],KIAA1958->KIAA1958,chr9:115249127-115431677:+,HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2	NCIH510_LUNG	0.6	0.97	1.3171	TRUE	0	1	0	2	1	TRUE	ACH-000871
NCIH510_LUNG	RAP2A--PCDH9-AS1	83	77	RAP2A	1563	chr13:98087038:+	PCDH9-AS1	12715	chr13:66897306:+	ONLY_REF_SPLICE	YES	96	0	0.62	1	0.8961	0.8313	RAP2A->Oncogene{Bushman},RAP2A,_member_of_RAS_oncogene_family,chr13:98086476-98121382:+,PCDH9-AS1->PCDH9_antisense_RNA_1,chr13:66878003-66897693:+	NCIH510_LUNG	0.62	1	1.7274	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PTK2--PKHD1L1	88	49	PTK2	47959	chr8:141710990:-	PKHD1L1	140485	chr8:110530396:+	ONLY_REF_SPLICE	YES	114	0	0.55	1	0.95	0.529	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,PKHD1L1->chr8:110374706-110542559:+,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)-like_1	NCIH510_LUNG	0.55	1	1.479	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	CAPZB--RP11-774D14.1	79	2	CAPZB	1137	chr1:19811930:-	RP11-774D14.1	27836	chr5:20895592:+	ONLY_REF_SPLICE	YES	25	0	0.76	1	0.8529	0.0216	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,RP11-774D14.1->chr5:20611949-20937800:+	NCIH510_LUNG	0.76	1	0.8745	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	KANSL1--ARL17B	69	42	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	63	54	0.64	0.67	0.7449	0.4534	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH510_LUNG	0.64	0.67	1.1983	TRUE	181	1564	124	196	0	FALSE	ACH-000871
NCIH510_LUNG	MT-TA--MT-TC	73	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7881	0.0972	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH510_LUNG	1	1	0.8853	FALSE	462	80	0	856	0	FALSE	ACH-000871
NCIH510_LUNG	PHF15--UBE2B	57	44	PHF15	6248	chr5:133873773:+	UBE2B	29270	chr5:133710074:+	ONLY_REF_SPLICE	YES	32	7	0.76	0.94	0.6154	0.475	PHF15->chr5:133860003-133918918:+,UBE2B->chr5:133706870-133727683:+,ubiquitin_conjugating_enzyme_E2_B	NCIH510_LUNG	0.76	0.94	1.0904	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TIMM23--RP11-464F9.1	57	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	167	9	0.27	0.88	0.6154	0.0648	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH510_LUNG	0.27	0.88	0.6802	TRUE	519	3926	326	965	0	FALSE	ACH-000871
NCIH510_LUNG	RP11-774D14.1--RP5-857K21.4	57	3	RP11-774D14.1	9780	chr5:20895676:+	RP5-857K21.4	23981	chr1:543436:-	ONLY_REF_SPLICE	YES	0	1	1	0.98	0.6154	0.0324	RP11-774D14.1->chr5:20611949-20937800:+,RP5-857K21.4->chr1:536816-659930:-	NCIH510_LUNG	0.98	1	0.6478	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	HDAC2--BEND3	47	35	HDAC2	2607	chr6:114292021:-	BEND3	34907	chr6:107420500:-	ONLY_REF_SPLICE	YES	203	0	0.29	1	0.5074	0.3779	HDAC2->Oncogene{Bushman},chr6:114254192-114332472:-,histone_deacetylase_2,BEND3->BEN_domain_containing_3,chr6:107386386-107436473:-	NCIH510_LUNG	0.29	1	0.8853	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	MACF1--HEYL	1	208	MACF1	8522	chr1:39670803:+	HEYL	126928	chr1:40098387:-	ONLY_REF_SPLICE	YES	129	36	0.62	0.85	0.0108	2.2455	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,HEYL->chr1:40089825-40105617:-,hes_related_family_bHLH_transcription_factor_with_YRPW_motif-like	NCIH510_LUNG	0.62	0.85	2.2563	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	MACF1--HEYL	9	176	MACF1	6636	chr1:39571389:+	HEYL	126932	chr1:40098383:-	INCL_NON_REF_SPLICE	YES	100	36	0.65	0.84	0.0972	1.9001	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,HEYL->chr1:40089825-40105617:-,hes_related_family_bHLH_transcription_factor_with_YRPW_motif-like	NCIH510_LUNG	0.65	0.84	1.9973	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TBC1D3F--SMYD3	41	33	TBC1D3F	8291	chr17:36291514:+	SMYD3	42584	chr1:245927451:-	ONLY_REF_SPLICE	YES	34	210	0.69	0.26	0.4426	0.3563	TBC1D3F->TBC1_domain_family_member_3F,chr17:36283971-36294915:+,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	NCIH510_LUNG	0.26	0.69	0.7989	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	NFE2L1--SKAP1	39	18	NFE2L1	8029	chr17:46134864:+	SKAP1	29800	chr17:46214699:-	ONLY_REF_SPLICE	YES	1142	42	0.05	0.58	0.421	0.1943	{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[71953],NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,SKAP1->chr17:46210802-46507637:-,src_kinase_associated_phosphoprotein_1	NCIH510_LUNG	0.05	0.58	0.6153	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PLXDC1--TAF13	41	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4426	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH510_LUNG	1	1	0.4426	TRUE	7	10	0	216	0	FALSE	ACH-000871
NCIH510_LUNG	PKHD1L1--ESRP1	32	19	PKHD1L1	78224	chr8:110535119:+	ESRP1	92517	chr8:95680177:+	ONLY_REF_SPLICE	YES	2	215	0.96	0.19	0.3455	0.2051	PKHD1L1->chr8:110374706-110542559:+,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)-like_1,ESRP1->chr8:95653302-95719694:+,epithelial_splicing_regulatory_protein_1	NCIH510_LUNG	0.19	0.96	0.5506	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	BAZ1A--SFTA3	26	37	BAZ1A	24866	chr14:35240717:-	SFTA3	39563	chr14:36947083:-	ONLY_REF_SPLICE	YES	122	518	0.34	0.11	0.2807	0.3994	{Klijn_CCL:Lung=1},BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,SFTA3->chr14:36942493-36983034:-,surfactant_associated_3	NCIH510_LUNG	0.11	0.34	0.6801	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	R3HDM2--DCTN2	26	10	R3HDM2	2356	chr12:57789532:-	DCTN2	39713	chr12:57929628:-	ONLY_REF_SPLICE	YES	16	566	0.69	0.06	0.2807	0.108	LOCAL_REARRANGEMENT:-:[99097],R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,DCTN2->chr12:57923885-57941114:-,dynactin_subunit_2	NCIH510_LUNG	0.06	0.69	0.3887	TRUE	0	2	0	1	1	TRUE	ACH-000871
NCIH510_LUNG	HSP90AB1--MT-RNR2	27	4	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3251	0	0.01	1	0.2915	0.0432	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH510_LUNG	0.01	1	0.3347	FALSE	13	9	0	364	0	FALSE	ACH-000871
NCIH510_LUNG	BAZ1A--SFTA3	21	26	BAZ1A	24866	chr14:35240717:-	SFTA3	40338	chr14:36946308:-	ONLY_REF_SPLICE	YES	122	574	0.28	0.08	0.2267	0.2807	{Klijn_CCL:Lung=1},BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,SFTA3->chr14:36942493-36983034:-,surfactant_associated_3	NCIH510_LUNG	0.08	0.28	0.5074	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	XRCC6--ACO2	23	15	XRCC6	9366	chr22:42049694:+	ACO2	18770	chr22:41895730:+	ONLY_REF_SPLICE	YES	902	4	0.04	0.9	0.2483	0.1619	LOCAL_REARRANGEMENT:+:[92130],XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+,ACO2->aconitase_2,chr22:41865129-41924993:+	NCIH510_LUNG	0.04	0.9	0.4102	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	FBXL3--TRPC4	21	10	FBXL3	1369	chr13:77600962:-	TRPC4	16483	chr13:38357497:-	ONLY_REF_SPLICE	YES	7	1	0.82	0.97	0.2267	0.108	FBXL3->F-box_and_leucine-rich_repeat_protein_3,chr13:77566740-77601330:-,TRPC4->chr13:38210773-38444562:-,transient_receptor_potential_cation_channel_subfamily_C_member_4	NCIH510_LUNG	0.82	0.97	0.3347	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP11-774D14.1--RP5-857K21.4	23	1	RP11-774D14.1	9780	chr5:20895676:+	RP5-857K21.4	25083	chr1:536957:-	ONLY_REF_SPLICE	YES	0	4	1	0.86	0.2483	0.0108	RP11-774D14.1->chr5:20611949-20937800:+,RP5-857K21.4->chr1:536816-659930:-	NCIH510_LUNG	0.86	1	0.2591	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	MT-ND5--MT-ATP8	22	3	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3406	8	0.01	0.76	0.2375	0.0324	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH510_LUNG	0.01	0.76	0.2699	FALSE	43	37	8	105	0	FALSE	ACH-000871
NCIH510_LUNG	AP003900.6--AC011718.2	18	16	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	23	0	0.6	1	0.1943	0.1727	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH510_LUNG	0.6	1	0.367	TRUE	0	5	0	45	5	FALSE	ACH-000871
NCIH510_LUNG	ELOVL6--ENPEP	17	20	ELOVL6	1953	chr4:111119403:-	ENPEP	17436	chr4:111397768:+	INCL_NON_REF_SPLICE	YES	67	0	0.36	1	0.1835	0.2159	{Klijn_CCL:Lung=1},ELOVL6->ELOVL_fatty_acid_elongase_6,chr4:110967002-111120355:-,ENPEP->chr4:111286889-111486441:+,glutamyl_aminopeptidase	NCIH510_LUNG	0.36	1	0.3994	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	CTD-2008L17.1--RP11-456O19.2	17	17	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	7	0	0.83	1	0.1835	0.1835	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH510_LUNG	0.83	1	0.367	FALSE	20	187	4	79	0	FALSE	ACH-000871
NCIH510_LUNG	TRIO--CTD-2296D1.5	21	1	TRIO	1181	chr5:14143991:+	CTD-2296D1.5	76570	chr5:7379726:+	ONLY_REF_SPLICE	YES	4	0	0.85	1	0.2267	0.0108	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,CTD-2296D1.5->chr5:7373230-7379903:+	NCIH510_LUNG	0.85	1	0.2375	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TBC1D3F--SMYD3	11	39	TBC1D3F	9827	chr17:36293050:+	SMYD3	42584	chr1:245927451:-	ONLY_REF_SPLICE	YES	59	210	0.46	0.19	0.1188	0.421	TBC1D3F->TBC1_domain_family_member_3F,chr17:36283971-36294915:+,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	NCIH510_LUNG	0.19	0.46	0.5398	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	MT-ND6--MT-TE	19	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2051	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH510_LUNG	1	1	0.2051	FALSE	499	1288	110	792	0	FALSE	ACH-000871
NCIH510_LUNG	ELOVL6--ENPEP	14	13	ELOVL6	1953	chr4:111119403:-	ENPEP	18883	chr4:111409697:+	ONLY_REF_SPLICE	YES	67	8	0.29	0.77	0.1511	0.1403	{Klijn_CCL:Lung=1},ELOVL6->ELOVL_fatty_acid_elongase_6,chr4:110967002-111120355:-,ENPEP->chr4:111286889-111486441:+,glutamyl_aminopeptidase	NCIH510_LUNG	0.29	0.77	0.2914	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PDXDC2P--RP11-296I10.3	16	4	PDXDC2P	1193	chr16:70099659:-	RP11-296I10.3	38298	chr16:70192792:-	ONLY_REF_SPLICE	YES	13	41	0.61	0.33	0.1727	0.0432	LOCAL_INVERSION:-,chr16:-:[90392],PDXDC2P->chr16:70010200-70099851:-,chr16:70044654-70099848:-,pyridoxal-dependent_decarboxylase_domain_containing_2,_pseudogene,RP11-296I10.3->chr16:70190243-70207351:-	NCIH510_LUNG	0.33	0.61	0.2159	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	BAGE2--CTBP2P1	15	6	BAGE2	5645	chr21:11058161:-	CTBP2P1	23085	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	123	0	0.15	1	0.1619	0.0648	BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	NCIH510_LUNG	0.15	1	0.2267	TRUE	0	0	0	6	0	TRUE	ACH-000871
NCIH510_LUNG	PPIEL--INPP5B	15	6	PPIEL	6401	chr1:40007392:-	INPP5B	21018	chr1:38357126:-	INCL_NON_REF_SPLICE	YES	0	27	1	0.44	0.1619	0.0648	PPIEL->chr1:39997510-40024379:-,peptidylprolyl_isomerase_E_like_pseudogene,INPP5B->chr1:38326369-38412729:-,inositol_polyphosphate-5-phosphatase_B	NCIH510_LUNG	0.44	1	0.2267	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP4-565E6.1--HYDIN	13	11	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	3	1	0.89	0.1403	0.1188	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH510_LUNG	0.89	1	0.2591	TRUE	456	1387	91	133	0	FALSE	ACH-000871
NCIH510_LUNG	BAZ1A--SFTA3	8	26	BAZ1A	24866	chr14:35240717:-	SFTA3	40343	chr14:36946303:-	ONLY_REF_SPLICE	YES	122	565	0.22	0.06	0.0864	0.2807	{Klijn_CCL:Lung=1},BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,SFTA3->chr14:36942493-36983034:-,surfactant_associated_3	NCIH510_LUNG	0.06	0.22	0.3671	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PTK2--PKHD1L1	12	7	PTK2	47959	chr8:141710990:-	PKHD1L1	140697	chr8:110530608:+	INCL_NON_REF_SPLICE	YES	114	26	0.14	0.42	0.1295	0.0756	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,PKHD1L1->chr8:110374706-110542559:+,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive)-like_1	NCIH510_LUNG	0.14	0.42	0.2051	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TBC1D3F--SMYD3	5	35	TBC1D3F	9304	chr17:36292527:+	SMYD3	42584	chr1:245927451:-	ONLY_REF_SPLICE	YES	52	210	0.43	0.16	0.054	0.3779	TBC1D3F->TBC1_domain_family_member_3F,chr17:36283971-36294915:+,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	NCIH510_LUNG	0.16	0.43	0.4319	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	AP003900.6--AC011718.2	8	19	AP003900.6	1122	chr21:11169841:+	AC011718.2	10130	chr22:20656894:-	INCL_NON_REF_SPLICE	YES	11	0	0.71	1	0.0864	0.2051	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH510_LUNG	0.71	1	0.2915	TRUE	0	0	0	11	0	TRUE	ACH-000871
NCIH510_LUNG	TBC1D3F--SMYD3	4	34	TBC1D3F	8741	chr17:36291964:+	SMYD3	42584	chr1:245927451:-	ONLY_REF_SPLICE	YES	51	210	0.43	0.15	0.0432	0.3671	TBC1D3F->TBC1_domain_family_member_3F,chr17:36283971-36294915:+,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	NCIH510_LUNG	0.15	0.43	0.4103	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PLXND1--TMCC1	11	5	PLXND1	15664	chr3:129288686:-	TMCC1	45922	chr3:129390107:-	ONLY_REF_SPLICE	YES	161	34	0.09	0.32	0.1188	0.054	Cosmic{samples=4,mutations=4,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[40974],PLXND1->chr3:129274018-129325661:-,plexin_D1,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	NCIH510_LUNG	0.09	0.32	0.1728	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TWSG1--PIK3C3	2	38	TWSG1	2314	chr18:9337350:+	PIK3C3	47788	chr18:39661087:+	ONLY_REF_SPLICE	YES	159	24	0.2	0.62	0.0216	0.4102	TWSG1->chr18:9334765-9402418:+,twisted_gastrulation_BMP_signaling_modulator_1,PIK3C3->chr18:39535171-39667794:+,phosphatidylinositol_3-kinase_catalytic_subunit_type_3	NCIH510_LUNG	0.2	0.62	0.4318	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	BAZ1A--SFTA3	9	6	BAZ1A	24866	chr14:35240717:-	SFTA3	42968	chr14:36943086:-	ONLY_REF_SPLICE	YES	122	508	0.11	0.03	0.0972	0.0648	{Klijn_CCL:Lung=1},BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,SFTA3->chr14:36942493-36983034:-,surfactant_associated_3	NCIH510_LUNG	0.03	0.11	0.162	TRUE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	VPS8--AGRN	9	6	VPS8	30387	chr3:184603944:+	AGRN	69518	chr1:976045:+	ONLY_REF_SPLICE	YES	41	143	0.27	0.09	0.0972	0.0648	VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+,AGRN->agrin,chr1:955503-991496:+	NCIH510_LUNG	0.09	0.27	0.162	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	MAF--RP11-679B19.2	8	9	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0864	0.0972	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	NCIH510_LUNG	1	1	0.1836	TRUE	48	25	3	38	0	FALSE	ACH-000871
NCIH510_LUNG	NF1--EPHB3	10	1	NF1	7019	chr17:29497015:+	EPHB3	79185	chr3:184289106:+	ONLY_REF_SPLICE	YES	40	2	0.22	0.85	0.108	0.0108	{Klijn_CCL:Lung=1},NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,EPHB3->EPH_receptor_B3,chr3:184279572-184300197:+	NCIH510_LUNG	0.22	0.85	0.1188	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	SMEK1--HEATR3	4	25	SMEK1	2049	chr14:91975850:-	HEATR3	34721	chr16:50134141:+	ONLY_REF_SPLICE	YES	71	74	0.29	0.28	0.0432	0.2699	{Klijn_CCL:Lung=1},SMEK1->chr14:91923955-91976898:-,HEATR3->HEAT_repeat_containing_3,chr16:50099852-50140298:+	NCIH510_LUNG	0.28	0.29	0.3131	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	NPM1P24--SET	10	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.108	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH510_LUNG	1	1	0.108	TRUE	0	0	0	434	0	FALSE	ACH-000871
NCIH510_LUNG	CYLD--KLF3	8	6	CYLD	6992	chr16:50788335:+	KLF3	40071	chr4:38698703:+	ONLY_REF_SPLICE	YES	46	80	0.23	0.15	0.0864	0.0648	{Klijn_CCL:Lung=1},CYLD->ArcherDX_panel,CYLD_lysine_63_deubiquitinase,FoundationOne_panel,Oncogene{Bushman},chr16:50775961-50835846:+,KLF3->Kruppel-like_factor_3_(basic),Oncogene{Bushman},chr4:38665817-38702663:+	NCIH510_LUNG	0.15	0.23	0.1512	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	AC027612.3--AP000345.1	8	5	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	20	0	0.39	1	0.0864	0.054	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH510_LUNG	0.39	1	0.1404	TRUE	0	0	0	11	0	TRUE	ACH-000871
NCIH510_LUNG	MT-ND6--MT-TE	8	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.81	1	0.0864	0.054	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH510_LUNG	0.81	1	0.1404	FALSE	499	1288	110	792	0	FALSE	ACH-000871
NCIH510_LUNG	MT-TA--MT-TC	7	9	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0756	0.0972	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH510_LUNG	1	1	0.1728	FALSE	462	80	0	856	0	FALSE	ACH-000871
NCIH510_LUNG	RP11-680G10.1--GSE1	9	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	57	1	0.15	0.0972	0.0108	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH510_LUNG	0.15	1	0.108	TRUE	458	1351	185	561	0	FALSE	ACH-000871
NCIH510_LUNG	AP000525.9--LA16c-60G3.6	9	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0972	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH510_LUNG	1	1	0.0972	TRUE	0	42	0	133	42	FALSE	ACH-000871
NCIH510_LUNG	BTD--FGD5	9	0	BTD	1554	chr3:15643401:+	FGD5	18414	chr3:14905635:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0972	0	{Klijn_CCL:Lung=1},BTD->biotinidase,chr3:15642848-15687329:+,FGD5->FYVE,_RhoGEF_and_PH_domain_containing_5,chr3:14860469-14975895:+	NCIH510_LUNG	1	1	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	HSP90AB1--MT-RNR2	8	4	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3250	0	0	1	0.0864	0.0432	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH510_LUNG	0	1	0.1296	FALSE	13	9	0	364	0	FALSE	ACH-000871
NCIH510_LUNG	MT-TA--MT-TC	6	12	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0648	0.1295	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH510_LUNG	1	1	0.1943	FALSE	462	80	0	856	0	FALSE	ACH-000871
NCIH510_LUNG	UNC45A--DYRK1A	6	12	UNC45A	10955	chr15:91488293:+	DYRK1A	37919	chr21:38868420:+	ONLY_REF_SPLICE	YES	136	83	0.12	0.18	0.0648	0.1295	UNC45A->chr15:91473410-91497323:+,unc-45_myosin_chaperone_A,DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A	NCIH510_LUNG	0.12	0.18	0.1943	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	DSCR4--KCNJ6	7	6	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	8	5	0.62	0.72	0.0756	0.0648	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	NCIH510_LUNG	0.62	0.72	0.1404	FALSE	0	24	0	27	0	FALSE	ACH-000871
NCIH510_LUNG	ELOVL6--ENPEP	3	20	ELOVL6	1953	chr4:111119403:-	ENPEP	17327	chr4:111397659:+	INCL_NON_REF_SPLICE	YES	67	0	0.26	1	0.0324	0.2159	{Klijn_CCL:Lung=1},ELOVL6->ELOVL_fatty_acid_elongase_6,chr4:110967002-111120355:-,ENPEP->chr4:111286889-111486441:+,glutamyl_aminopeptidase	NCIH510_LUNG	0.26	1	0.2483	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	MT-ATP6--MT-CO1	5	11	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2514	23086	0.01	0	0.054	0.1188	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH510_LUNG	0	0.01	0.1728	FALSE	183	104	9	328	0	FALSE	ACH-000871
NCIH510_LUNG	C15orf57--CBX3	7	2	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	29	43	0.24	0.17	0.0756	0.0216	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH510_LUNG	0.17	0.24	0.0972	TRUE	267	562	48	632	0	FALSE	ACH-000871
NCIH510_LUNG	HDAC2--BEND3	1	25	HDAC2	2607	chr6:114292021:-	BEND3	35450	chr6:107419957:-	ONLY_REF_SPLICE	YES	203	0	0.11	1	0.0108	0.2699	HDAC2->Oncogene{Bushman},chr6:114254192-114332472:-,histone_deacetylase_2,BEND3->BEN_domain_containing_3,chr6:107386386-107436473:-	NCIH510_LUNG	0.11	1	0.2807	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	MT-ND5--MT-ATP8	7	1	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5932	57	0	0.12	0.0756	0.0108	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH510_LUNG	0	0.12	0.0864	FALSE	43	37	8	105	0	FALSE	ACH-000871
NCIH510_LUNG	PDXDC2P--RP11-296I10.3	4	13	PDXDC2P	1193	chr16:70099659:-	RP11-296I10.3	35294	chr16:70195796:-	ONLY_REF_SPLICE	YES	13	1	0.57	0.94	0.0432	0.1403	LOCAL_INVERSION:-,chr16:-:[90392],PDXDC2P->chr16:70010200-70099851:-,chr16:70044654-70099848:-,pyridoxal-dependent_decarboxylase_domain_containing_2,_pseudogene,RP11-296I10.3->chr16:70190243-70207351:-	NCIH510_LUNG	0.57	0.94	0.1835	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PHF15--UBE2B	1	25	PHF15	6248	chr5:133873773:+	UBE2B	30471	chr5:133712360:+	ONLY_REF_SPLICE	YES	32	323	0.45	0.07	0.0108	0.2699	PHF15->chr5:133860003-133918918:+,UBE2B->chr5:133706870-133727683:+,ubiquitin_conjugating_enzyme_E2_B	NCIH510_LUNG	0.07	0.45	0.2807	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TCEA2--ITGAE	7	1	TCEA2	7488	chr20:62697891:+	ITGAE	28235	chr17:3655168:-	ONLY_REF_SPLICE	YES	37	0	0.18	1	0.0756	0.0108	TCEA2->chr20:62681189-62703700:+,transcription_elongation_factor_A2,ITGAE->chr17:3617922-3704537:-,integrin_subunit_alpha_E	NCIH510_LUNG	0.18	1	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	CTD-2314B22.3--RP11-536C10.19	7	0	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0756	0	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	NCIH510_LUNG	1	1	0.0756	TRUE	0	2	0	9	2	TRUE	ACH-000871
NCIH510_LUNG	CAPZB--RP11-774D14.1	6	3	CAPZB	2383	chr1:19810684:-	RP11-774D14.1	27836	chr5:20895592:+	ONLY_REF_SPLICE	YES	81	0	0.1	1	0.0648	0.0324	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,RP11-774D14.1->chr5:20611949-20937800:+	NCIH510_LUNG	0.1	1	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PDXDC2P--RP11-296I10.3	5	7	PDXDC2P	1193	chr16:70099659:-	RP11-296I10.3	36246	chr16:70194844:-	ONLY_REF_SPLICE	YES	13	14	0.48	0.46	0.054	0.0756	LOCAL_INVERSION:-,chr16:-:[90392],PDXDC2P->chr16:70010200-70099851:-,chr16:70044654-70099848:-,pyridoxal-dependent_decarboxylase_domain_containing_2,_pseudogene,RP11-296I10.3->chr16:70190243-70207351:-	NCIH510_LUNG	0.46	0.48	0.1296	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP11-123O10.4--GRIP1	6	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0648	0.0324	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH510_LUNG	1	1	0.0972	FALSE	416	2512	207	587	0	FALSE	ACH-000871
NCIH510_LUNG	BAZ1A--SFTA3	4	10	BAZ1A	24866	chr14:35240717:-	SFTA3	41976	chr14:36944078:-	ONLY_REF_SPLICE	YES	122	534	0.1	0.03	0.0432	0.108	{Klijn_CCL:Lung=1},BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,SFTA3->chr14:36942493-36983034:-,surfactant_associated_3	NCIH510_LUNG	0.03	0.1	0.1512	TRUE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	SLC1A5--MT-ND4L	6	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	639	0	0.01	1	0.0648	0.0108	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH510_LUNG	0.01	1	0.0756	FALSE	0	0	0	189	0	FALSE	ACH-000871
NCIH510_LUNG	AP003900.6--AC011718.2	5	4	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	23	9	0.28	0.5	0.054	0.0432	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH510_LUNG	0.28	0.5	0.0972	TRUE	0	1	0	24	1	FALSE	ACH-000871
NCIH510_LUNG	MT-ATP6--MT-CO1	3	12	MT-ATP6	1462	chrM:8988:+	MT-CO1	5224	chrM:6446:+	INCL_NON_REF_SPLICE	YES	6239	20536	0	0	0.0324	0.1295	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH510_LUNG	0	0	0.1619	FALSE	183	104	9	328	0	FALSE	ACH-000871
NCIH510_LUNG	RP11-120D5.1--MID1	5	4	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	8	42	0.53	0.18	0.054	0.0432	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH510_LUNG	0.18	0.53	0.0972	FALSE	0	9	0	55	0	FALSE	ACH-000871
NCIH510_LUNG	HECTD4--RP11-113C12.4	4	7	HECTD4	9161	chr12:112720914:-	RP11-113C12.4	83137	chr12:8521578:+	ONLY_REF_SPLICE	YES	34	0	0.24	1	0.0432	0.0756	HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,RP11-113C12.4->chr12:8472977-8522151:+	NCIH510_LUNG	0.24	1	0.1188	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	MTND4P12--MT-ATP8	5	3	MTND4P12	1966	chr5:134262761:-	MT-ATP8	5439	chrM:8427:+	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.054	0.0324	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH510_LUNG	0.73	1	0.0864	FALSE	19	17	1	5	0	FALSE	ACH-000871
NCIH510_LUNG	BAGE2--CTBP2P1	4	6	BAGE2	5645	chr21:11058161:-	CTBP2P1	23091	chrY:59001446:+	INCL_NON_REF_SPLICE	YES	123	0	0.08	1	0.0432	0.0648	BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	NCIH510_LUNG	0.08	1	0.108	TRUE	0	0	0	6	0	TRUE	ACH-000871
NCIH510_LUNG	R3HDM2--DCTN2	3	10	R3HDM2	2357	chr12:57789531:-	DCTN2	39708	chr12:57929633:-	INCL_NON_REF_SPLICE	YES	17	592	0.43	0.02	0.0324	0.108	LOCAL_REARRANGEMENT:-:[99097],R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,DCTN2->chr12:57923885-57941114:-,dynactin_subunit_2	NCIH510_LUNG	0.02	0.43	0.1404	TRUE	0	2	0	1	1	FALSE	ACH-000871
NCIH510_LUNG	HECTD4--RP11-266K4.9	5	1	HECTD4	9161	chr12:112720914:-	RP11-266K4.9	85848	chr12:8394958:+	ONLY_REF_SPLICE	YES	34	0	0.15	1	0.054	0.0108	HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,RP11-266K4.9->chr12:8388011-8395160:+	NCIH510_LUNG	0.15	1	0.0648	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	CTD-2008L17.1--RP11-456O19.2	4	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	7	1	0.53	0.89	0.0432	0.0432	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH510_LUNG	0.53	0.89	0.0864	FALSE	33	240	4	98	0	FALSE	ACH-000871
NCIH510_LUNG	MT-ATP6--MT-CO1	4	4	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	7635	20073	0	0	0.0432	0.0432	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH510_LUNG	0	0	0.0864	FALSE	183	104	9	328	0	FALSE	ACH-000871
NCIH510_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH510_LUNG	1	1	0.054	FALSE	499	1288	110	792	0	FALSE	ACH-000871
NCIH510_LUNG	MTND4P12--MT-ATP8	5	0	MTND4P12	1281	chr5:134263446:-	MT-ATP8	5480	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH510_LUNG	1	1	0.054	FALSE	19	17	1	5	0	FALSE	ACH-000871
NCIH510_LUNG	MTND4P12--MT-ATP8	5	0	MTND4P12	1209	chr5:134263518:-	MT-ATP8	5477	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH510_LUNG	1	1	0.054	FALSE	19	17	1	5	0	FALSE	ACH-000871
NCIH510_LUNG	NPM1P24--SET	5	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH510_LUNG	1	1	0.054	TRUE	0	0	0	434	0	FALSE	ACH-000871
NCIH510_LUNG	XXbac-BPG252P9.9--TUBBP2	5	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	NCIH510_LUNG	1	1	0.054	TRUE	0	1	0	48	1	FALSE	ACH-000871
NCIH510_LUNG	KCNQ3--RP11-382A18.2	4	3	KCNQ3	5087	chr8:133196488:-	RP11-382A18.2	31616	chr8:128404749:+	ONLY_REF_SPLICE	YES	25	0	0.22	1	0.0432	0.0324	KCNQ3->chr8:133133108-133493200:-,potassium_voltage-gated_channel_subfamily_Q_member_3,RP11-382A18.2->chr8:128351519-128404876:+	NCIH510_LUNG	0.22	1	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	R3HDM2--DCTN2	2	11	R3HDM2	2356	chr12:57789532:-	DCTN2	33799	chr12:57939879:-	ONLY_REF_SPLICE	YES	16	707	0.45	0.02	0.0216	0.1188	LOCAL_REARRANGEMENT:-:[99097],R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,DCTN2->chr12:57923885-57941114:-,dynactin_subunit_2	NCIH510_LUNG	0.02	0.45	0.1404	TRUE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	RP5-864K19.4--GRIK3	4	2	RP5-864K19.4	1240	chr1:39325911:+	GRIK3	20757	chr1:37291427:-	ONLY_REF_SPLICE	YES	7	153	0.46	0.04	0.0432	0.0216	RP5-864K19.4->chr1:39325672-39385068:+,GRIK3->chr1:37261128-37499730:-,glutamate_ionotropic_receptor_kainate_type_subunit_3	NCIH510_LUNG	0.04	0.46	0.0648	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	AC131097.3--AC093642.5	3	5	AC131097.3	2273	chr2:242824786:+	AC093642.5	11670	chr2:243037038:+	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0324	0.054	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	NCIH510_LUNG	0.89	1	0.0864	FALSE	3	20	2	16	0	FALSE	ACH-000871
NCIH510_LUNG	LPHN3--UNC5C	4	1	LPHN3	36778	chr4:62936707:+	UNC5C	67338	chr4:96090550:-	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0432	0.0108	LPHN3->chr4:62066976-62944053:+,UNC5C->chr4:96083655-96470357:-,unc-5_netrin_receptor_C	NCIH510_LUNG	0.62	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	MT-ATP6--MT-CO1	4	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7505	22683	0	0	0.0432	0.0108	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH510_LUNG	0	0	0.054	FALSE	183	104	9	328	0	FALSE	ACH-000871
NCIH510_LUNG	MT-ND5--MT-ATP8	4	1	MT-ND5	1076	chrM:12412:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	NO	578	0	0.01	1	0.0432	0.0108	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH510_LUNG	0.01	1	0.054	FALSE	34	25	3	77	0	FALSE	ACH-000871
NCIH510_LUNG	MT-ND5--MT-ATP8	3	5	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	5	408	0.62	0.02	0.0324	0.054	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH510_LUNG	0.02	0.62	0.0864	FALSE	43	37	8	105	0	FALSE	ACH-000871
NCIH510_LUNG	MT-ND6--MT-TE	3	5	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0324	0.054	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH510_LUNG	0.89	1	0.0864	FALSE	499	1288	110	792	0	FALSE	ACH-000871
NCIH510_LUNG	OXR1--PTK2	3	5	OXR1	9883	chr8:107670413:+	PTK2	45090	chr8:141900868:-	ONLY_REF_SPLICE	YES	217	177	0.04	0.04	0.0324	0.054	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	NCIH510_LUNG	0.04	0.04	0.0864	TRUE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	RP11-634B7.4--TRIM58	4	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	10	1	0.33	0.0432	0.0108	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	NCIH510_LUNG	0.33	1	0.054	TRUE	158	633	76	73	0	FALSE	ACH-000871
NCIH510_LUNG	BCAS4--PTPN1	3	4	BCAS4	2352	chr20:49434819:+	PTPN1	13549	chr20:49177900:+	ONLY_REF_SPLICE	YES	76	228	0.08	0.03	0.0324	0.0432	{Klijn_CCL:Lung=1},BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,PTPN1->chr20:49126891-49201299:+,protein_tyrosine_phosphatase,_non-receptor_type_1	NCIH510_LUNG	0.03	0.08	0.0756	TRUE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	KCNN3--TAF12	4	0	KCNN3	9249	chr1:154698392:-	TAF12	28782	chr1:28948677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	KCNN3->chr1:154669931-154842756:-,potassium_calcium-activated_channel_subfamily_N_member_3,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	NCIH510_LUNG	1	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	MT-ND1--MT-RNR2	3	4	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	7	0	0.5	1	0.0324	0.0432	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH510_LUNG	0.5	1	0.0756	FALSE	114	26	4	85	0	FALSE	ACH-000871
NCIH510_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH510_LUNG	1	1	0.0432	FALSE	499	1288	110	792	0	FALSE	ACH-000871
NCIH510_LUNG	TMC5--TMC7	3	4	TMC5	27974	chr16:19508485:+	TMC7	39217	chr16:19041546:+	ONLY_REF_SPLICE	YES	15	3	0.32	0.7	0.0324	0.0432	PROTCLUST,TMC5->chr16:19421818-19510435:+,transmembrane_channel_like_5,TMC7->chr16:18995256-19075264:+,transmembrane_channel_like_7	NCIH510_LUNG	0.32	0.7	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	AP003900.6--AC011718.2	2	7	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	23	2	0.28	0.82	0.0216	0.0756	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH510_LUNG	0.28	0.82	0.0972	TRUE	0	1	0	20	1	FALSE	ACH-000871
NCIH510_LUNG	KANSL1--ARL17B	2	7	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	69	54	0.12	0.14	0.0216	0.0756	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH510_LUNG	0.12	0.14	0.0972	TRUE	105	90	7	93	0	FALSE	ACH-000871
NCIH510_LUNG	MTND4P12--MT-ATP8	3	3	MTND4P12	1989	chr5:134262738:-	MT-ATP8	5464	chrM:8452:+	INCL_NON_REF_SPLICE	YES	3	0	0.67	1	0.0324	0.0324	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH510_LUNG	0.67	1	0.0648	FALSE	19	17	1	5	0	FALSE	ACH-000871
NCIH510_LUNG	PLXND1--TMCC1	3	3	PLXND1	14721	chr3:129289629:-	TMCC1	45922	chr3:129390107:-	ONLY_REF_SPLICE	YES	203	34	0.03	0.15	0.0324	0.0324	Cosmic{samples=4,mutations=4,papers=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[40974],PLXND1->chr3:129274018-129325661:-,plexin_D1,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	NCIH510_LUNG	0.03	0.15	0.0648	TRUE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	RP11-120D5.1--MID1	3	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	42	0.46	0.12	0.0324	0.0324	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH510_LUNG	0.12	0.46	0.0648	FALSE	16	356	14	466	0	FALSE	ACH-000871
NCIH510_LUNG	RP4-565E6.1--HYDIN	3	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	6	1	0.5	0.0324	0.0324	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH510_LUNG	0.5	1	0.0648	TRUE	84	87	4	41	0	FALSE	ACH-000871
NCIH510_LUNG	UNC45A--DYRK1A	3	3	UNC45A	9776	chr15:91486312:+	DYRK1A	37919	chr21:38868420:+	ONLY_REF_SPLICE	YES	70	83	0.08	0.07	0.0324	0.0324	UNC45A->chr15:91473410-91497323:+,unc-45_myosin_chaperone_A,DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A	NCIH510_LUNG	0.07	0.08	0.0648	TRUE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	AC131097.3--AC093642.5	3	2	AC131097.3	2273	chr2:242824786:+	AC093642.5	12811	chr2:243056790:+	ONLY_REF_SPLICE	YES	0	10	1	0.33	0.0324	0.0216	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	NCIH510_LUNG	0.33	1	0.054	FALSE	2	37	1	16	0	FALSE	ACH-000871
NCIH510_LUNG	LINC01014--KCNMB2	3	2	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	2	23	0.71	0.18	0.0324	0.0216	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH510_LUNG	0.18	0.71	0.054	FALSE	11	60	26	37	0	FALSE	ACH-000871
NCIH510_LUNG	MT-ND1--MT-RNR2	3	2	MT-ND1	1018	chrM:3324:+	MT-RNR2	6435	chrM:3149:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.83	0.0324	0.0216	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH510_LUNG	0.83	1	0.054	FALSE	92	22	4	61	0	FALSE	ACH-000871
NCIH510_LUNG	PRDM2--MT-ND4L	3	2	PRDM2	17152	chr1:14107322:+	MT-ND4L	28802	chrM:10485:+	INCL_NON_REF_SPLICE	YES	107	0	0.04	1	0.0324	0.0216	PRDM2->Oncogene{Bushman},PR_domain_2,chr1:14026693-14151574:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH510_LUNG	0.04	1	0.054	FALSE	0	0	0	4	0	FALSE	ACH-000871
NCIH510_LUNG	RP11-89K10.1--RP11-103H7.3	3	2	RP11-89K10.1	2156	chr8:127601535:+	RP11-103H7.3	14591	chr8:127533145:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0324	0.0216	LOCAL_REARRANGEMENT:+:[35524],RP11-89K10.1->chr8:127570120-127725660:+,RP11-103H7.3->chr8:127530943-127534596:+	NCIH510_LUNG	0.83	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	UHRF1--PIAS4	3	2	UHRF1	7807	chr19:4932968:+	PIAS4	31264	chr19:4037372:+	ONLY_REF_SPLICE	YES	158	109	0.03	0.04	0.0324	0.0216	{Klijn_CCL:Lung=1},UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1,PIAS4->chr19:4007644-4039384:+,protein_inhibitor_of_activated_STAT_4	NCIH510_LUNG	0.03	0.04	0.054	TRUE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	AC027612.3--AP000345.1	2	5	AC027612.3	3881	chr2:91893844:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0216	0.054	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	NCIH510_LUNG	0.78	1	0.0756	TRUE	0	0	0	11	0	TRUE	ACH-000871
NCIH510_LUNG	MT-TA--MT-TC	3	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0.0108	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH510_LUNG	1	1	0.0432	FALSE	462	80	0	856	0	FALSE	ACH-000871
NCIH510_LUNG	PPIE--MYCL	3	1	PPIE	14803	chr1:40219161:+	MYCL	25795	chr1:40363202:-	INCL_NON_REF_SPLICE	NO	2377	4654	0	0	0.0324	0.0108	PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH510_LUNG	0	0	0.0432	FALSE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	ANKLE2--LONP2	3	0	ANKLE2	6732	chr12:133332743:-	LONP2	50303	chr16:48388351:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-,LONP2->chr16:48278207-48397033:+,lon_peptidase_2,_peroxisomal	NCIH510_LUNG	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	C15orf57--CBX3	3	0	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH510_LUNG	1	1	0.0324	TRUE	267	562	48	632	0	FALSE	ACH-000871
NCIH510_LUNG	CGNL1--TCF12	3	0	CGNL1	1601	chr15:57668765:+	TCF12	48460	chr15:57458600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:+:[76686],CGNL1->chr15:57668165-57842925:+,cingulin-like_1,TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12	NCIH510_LUNG	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	CTD-2021H9.3--PTPRR	3	0	CTD-2021H9.3	2287	chr12:71509630:-	PTPRR	8077	chr12:71286757:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	CTD-2021H9.3->chr12:71441182-71512027:-,PTPRR->chr12:71031853-71314623:-,protein_tyrosine_phosphatase,_receptor_type_R	NCIH510_LUNG	1	1	0.0324	TRUE	0	4	0	1	4	TRUE	ACH-000871
NCIH510_LUNG	EHMT1--EGFL7	3	0	EHMT1	1058	chr9:140513501:+	EGFL7	54659	chr9:139559144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,EGFL7->EGF_like_domain_multiple_7,chr9:139553308-139567130:+	NCIH510_LUNG	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	HDAC2--BEND3	2	4	HDAC2	2607	chr6:114292021:-	BEND3	36653	chr6:107392154:-	ONLY_REF_SPLICE	YES	203	27	0.03	0.18	0.0216	0.0432	HDAC2->Oncogene{Bushman},chr6:114254192-114332472:-,histone_deacetylase_2,BEND3->BEN_domain_containing_3,chr6:107386386-107436473:-	NCIH510_LUNG	0.03	0.18	0.0648	TRUE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1088	chrM:8614:+	MT-CO1	5237	chrM:6459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH510_LUNG	1	1	0.0324	FALSE	183	104	9	328	0	FALSE	ACH-000871
NCIH510_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH510_LUNG	1	1	0.0324	FALSE	183	104	9	328	0	FALSE	ACH-000871
NCIH510_LUNG	MTND4P12--MT-ATP8	3	0	MTND4P12	1212	chr5:134263515:-	MT-ATP8	5425	chrM:8413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH510_LUNG	1	1	0.0324	FALSE	19	17	1	5	0	FALSE	ACH-000871
NCIH510_LUNG	RP1-118J21.5--BMP8B	2	4	RP1-118J21.5	1322	chr1:40363738:+	BMP8B	8987	chr1:40230489:-	ONLY_REF_SPLICE	YES	16	163	0.27	0.04	0.0216	0.0432	RP1-118J21.5->chr1:40363417-40364770:+,BMP8B->bone_morphogenetic_protein_8b,chr1:40222854-40254533:-	NCIH510_LUNG	0.04	0.27	0.0648	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP11-319G9.5--WWOX	3	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	NCIH510_LUNG	1	1	0.0324	FALSE	154	425	28	76	0	FALSE	ACH-000871
NCIH510_LUNG	TRAPPC9--KCNK9	3	0	TRAPPC9	55504	chr8:140898123:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0324	0	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	NCIH510_LUNG	1	1	0.0324	FALSE	7	13	2	16	0	FALSE	ACH-000871
NCIH510_LUNG	EBAG9--CASC8	2	3	EBAG9	1751	chr8:110552690:+	CASC8	22351	chr8:128335399:-	ONLY_REF_SPLICE	YES	22	0	0.19	1	0.0216	0.0324	EBAG9->Oncogene{Bushman},chr8:110551940-110578225:+,estrogen_receptor_binding_site_associated,_antigen,_9,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH510_LUNG	0.19	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	FAM53A--NELFA	2	3	FAM53A	5655	chr4:1656705:-	NELFA	30132	chr4:1986646:-	ONLY_REF_SPLICE	YES	0	140	1	0.03	0.0216	0.0324	FAM53A->chr4:1619642-1686029:-,family_with_sequence_similarity_53_member_A,NELFA->chr4:1984441-2043630:-,negative_elongation_factor_complex_member_A	NCIH510_LUNG	0.03	1	0.054	TRUE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	RP11-1L12.3--SLC5A12	1	7	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	3	0	0.73	1	0.0108	0.0756	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	NCIH510_LUNG	0.73	1	0.0864	TRUE	3	101	0	60	0	FALSE	ACH-000871
NCIH510_LUNG	SMARCA4--ASB16	2	3	SMARCA4	40642	chr19:11170863:+	ASB16	49568	chr17:42254106:+	ONLY_REF_SPLICE	YES	599	0	0.01	1	0.0216	0.0324	SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+,ASB16->ankyrin_repeat_and_SOCS_box_containing_16,chr17:42247815-42256451:+	NCIH510_LUNG	0.01	1	0.054	FALSE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	XRCC6--ACO2	2	3	XRCC6	9366	chr22:42049694:+	ACO2	19907	chr22:41903795:+	ONLY_REF_SPLICE	YES	902	246	0.01	0.02	0.0216	0.0324	LOCAL_REARRANGEMENT:+:[92130],XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+,ACO2->aconitase_2,chr22:41865129-41924993:+	NCIH510_LUNG	0.01	0.02	0.054	FALSE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	FHOD3--RP11-172F10.1	2	2	FHOD3	1287	chr18:33877963:+	RP11-172F10.1	40912	chr18:5004002:-	ONLY_REF_SPLICE	YES	26	0	0.13	1	0.0216	0.0216	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,RP11-172F10.1->chr18:4775053-5004536:-	NCIH510_LUNG	0.13	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	MACF1--NT5C1A	2	2	MACF1	6636	chr1:39571389:+	NT5C1A	130402	chr1:40125158:-	ONLY_REF_SPLICE	YES	100	0	0.04	1	0.0216	0.0216	MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1,NT5C1A->5'-nucleotidase,_cytosolic_IA,chr1:40124793-40137710:-	NCIH510_LUNG	0.04	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	NCALD--RRM2B	2	2	NCALD	5524	chr8:103032465:-	RRM2B	39011	chr8:103231175:-	ONLY_REF_SPLICE	YES	28	181	0.12	0.02	0.0216	0.0216	LOCAL_REARRANGEMENT:-:[79595],NCALD->chr8:102698771-103137135:-,neurocalcin_delta,RRM2B->chr8:103216730-103251346:-,ribonucleotide_reductase_regulatory_TP53_inducible_subunit_M2B	NCIH510_LUNG	0.02	0.12	0.0432	TRUE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	OXR1--PTK2	2	2	OXR1	4606	chr8:107531367:+	PTK2	41423	chr8:141935848:-	ONLY_REF_SPLICE	YES	50	151	0.07	0.03	0.0216	0.0216	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	NCIH510_LUNG	0.03	0.07	0.0432	TRUE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	PDXDC2P--RP11-296I10.3	1	6	PDXDC2P	1193	chr16:70099659:-	RP11-296I10.3	36876	chr16:70194214:-	ONLY_REF_SPLICE	YES	13	16	0.35	0.3	0.0108	0.0648	LOCAL_INVERSION:-,chr16:-:[90392],PDXDC2P->chr16:70010200-70099851:-,chr16:70044654-70099848:-,pyridoxal-dependent_decarboxylase_domain_containing_2,_pseudogene,RP11-296I10.3->chr16:70190243-70207351:-	NCIH510_LUNG	0.3	0.35	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PHF15--UBE2B	1	6	PHF15	6248	chr5:133873773:+	UBE2B	33808	chr5:133724016:+	ONLY_REF_SPLICE	YES	32	464	0.18	0.01	0.0108	0.0648	PHF15->chr5:133860003-133918918:+,UBE2B->chr5:133706870-133727683:+,ubiquitin_conjugating_enzyme_E2_B	NCIH510_LUNG	0.01	0.18	0.0756	FALSE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	RP1-118J21.5--BMP8B	2	2	RP1-118J21.5	1322	chr1:40363738:+	BMP8B	10013	chr1:40229463:-	ONLY_REF_SPLICE	YES	16	130	0.2	0.03	0.0216	0.0216	RP1-118J21.5->chr1:40363417-40364770:+,BMP8B->bone_morphogenetic_protein_8b,chr1:40222854-40254533:-	NCIH510_LUNG	0.03	0.2	0.0432	TRUE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	CNGB3--RP11-99H20.1	2	1	CNGB3	12313	chr8:87655979:-	RP11-99H20.1	30246	chr8:83020948:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0.0108	CNGB3->chr8:87566205-87755903:-,cyclic_nucleotide_gated_channel_beta_3,RP11-99H20.1->chr8:83010686-83072812:-	NCIH510_LUNG	1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	MMP26--OR51E1	2	1	MMP26	2191	chr11:4788571:+	OR51E1	11830	chr11:4673718:+	ONLY_REF_SPLICE	YES	0	9	1	0.25	0.0216	0.0108	LOCAL_REARRANGEMENT:+:[49439],MMP26->chr11:4726157-5013659:+,matrix_metallopeptidase_26,OR51E1->chr11:4664650-4676718:+,olfactory_receptor_family_51_subfamily_E_member_1	NCIH510_LUNG	0.25	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0.0108	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH510_LUNG	1	1	0.0324	FALSE	93	270	15	244	0	FALSE	ACH-000871
NCIH510_LUNG	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	1346	chr4:98554629:-	STPG2	26866	chr4:98108984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0.0108	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	NCIH510_LUNG	1	1	0.0324	TRUE	0	6	0	6	6	TRUE	ACH-000871
NCIH510_LUNG	TCEA2--ITGAE	2	1	TCEA2	7970	chr20:62698373:+	ITGAE	28235	chr17:3655168:-	ONLY_REF_SPLICE	YES	29	0	0.09	1	0.0216	0.0108	TCEA2->chr20:62681189-62703700:+,transcription_elongation_factor_A2,ITGAE->chr17:3617922-3704537:-,integrin_subunit_alpha_E	NCIH510_LUNG	0.09	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TMC5--TMC7	2	1	TMC5	27974	chr16:19508485:+	TMC7	42813	chr16:19049196:+	ONLY_REF_SPLICE	YES	15	8	0.17	0.27	0.0216	0.0108	PROTCLUST,TMC5->chr16:19421818-19510435:+,transmembrane_channel_like_5,TMC7->chr16:18995256-19075264:+,transmembrane_channel_like_7	NCIH510_LUNG	0.17	0.27	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	USP10--COTL1	2	1	USP10	7066	chr16:84767109:+	COTL1	26655	chr16:84623868:-	ONLY_REF_SPLICE	YES	337	2386	0.01	0	0.0216	0.0108	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	NCIH510_LUNG	0	0.01	0.0324	FALSE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	VTI1A--RP11-57H14.3	2	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	45	0	0.06	1	0.0216	0.0108	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH510_LUNG	0.06	1	0.0324	FALSE	272	151	14	158	0	FALSE	ACH-000871
NCIH510_LUNG	VWDE--PHF14	2	1	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	14	54	0.18	0.05	0.0216	0.0108	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH510_LUNG	0.05	0.18	0.0324	TRUE	0	6	0	17	2	TRUE	ACH-000871
NCIH510_LUNG	ANKRD12--PTPN2	2	0	ANKRD12	1869	chr18:9137094:+	PTPN2	44038	chr18:12817364:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	ANKRD12->ankyrin_repeat_domain_12,chr18:9136226-9285983:+,PTPN2->chr18:12785477-12929642:-,protein_tyrosine_phosphatase,_non-receptor_type_2	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	CTD-2368P22.1--ZFP28	2	0	CTD-2368P22.1	1986	chr19:58514414:+	ZFP28	22320	chr19:57065053:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	CTD-2368P22.1->chr19:58513429-58522600:+,ZFP28->ZFP28_zinc_finger_protein,chr19:57050317-57068169:+	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	HAT1--IMPA1	2	0	HAT1	5270	chr2:172803303:+	IMPA1	25212	chr8:82586184:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1,IMPA1->chr8:82570196-82598928:-,inositol_monophosphatase_1	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	HSP90AA1--DYNC1H1	2	0	HSP90AA1	7819	chr14:102549371:-	DYNC1H1	29012	chr14:102467291:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,{Klijn_CCL:Lung=1,Breast=1},LOCAL_INVERSION:-:+:[29946],HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1,DYNC1H1->chr14:102430865-102517129:+,dynein_cytoplasmic_1_heavy_chain_1	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	2	0	TRUE	ACH-000871
NCIH510_LUNG	KIAA1467--TMEM123	2	0	KIAA1467	11392	chr12:13229077:+	TMEM123	27366	chr11:102272937:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	KIAA1467->chr12:13197218-13295455:+,TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	LINC00299--AC007464.1	2	0	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	NCIH510_LUNG	1	1	0.0216	TRUE	67	49	0	25	0	FALSE	ACH-000871
NCIH510_LUNG	LNPEP--TRIM23	2	0	LNPEP	8811	chr5:96322374:+	TRIM23	45481	chr5:64900872:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LNPEP->Oncogene{Bushman},chr5:96271098-96373219:+,leucyl/cystinyl_aminopeptidase,TRIM23->chr5:64885507-64921802:-,tripartite_motif_containing_23	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	OXR1--PTK2	1	4	OXR1	9783	chr8:107670313:+	PTK2	35791	chr8:141994254:-	ONLY_REF_SPLICE	YES	283	148	0.02	0.03	0.0108	0.0432	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	NCIH510_LUNG	0.02	0.03	0.054	TRUE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	PLCB4--PLCB1	1	4	PLCB4	4901	chr20:9198099:+	PLCB1	54377	chr20:8630021:+	ONLY_REF_SPLICE	YES	22	28	0.19	0.15	0.0108	0.0432	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	NCIH510_LUNG	0.15	0.19	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PLCB4--PLCB1	1	4	PLCB4	4901	chr20:9198099:+	PLCB1	57052	chr20:8637831:+	ONLY_REF_SPLICE	YES	22	30	0.19	0.14	0.0108	0.0432	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	NCIH510_LUNG	0.14	0.19	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	R3HDM2--DCTN2	2	0	R3HDM2	1286	chr12:57824503:-	DCTN2	39713	chr12:57929628:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	LOCAL_REARRANGEMENT:-:[99097],R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,DCTN2->chr12:57923885-57941114:-,dynactin_subunit_2	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP11-1038A11.1--RIT2	2	0	RP11-1038A11.1	4371	chr12:5514622:+	RIT2	13036	chr18:40503728:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	RP11-1038A11.1->chr12:5497755-5515817:+,RIT2->Ras-like_without_CAAX_2,chr18:40323192-40695657:-	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP11-120D5.1--MID1	1	4	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	3	42	0.62	0.11	0.0108	0.0432	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH510_LUNG	0.11	0.62	0.054	FALSE	2	31	0	60	0	FALSE	ACH-000871
NCIH510_LUNG	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH510_LUNG	1	1	0.0216	FALSE	515	4851	409	746	0	FALSE	ACH-000871
NCIH510_LUNG	TAF1--BACE2	2	0	TAF1	28193	chrX:70644088:+	BACE2	62239	chr21:42647298:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	TAF1->ArcherDX_panel,FoundationOne_panel,TATA-box_binding_protein_associated_factor_1,chrX:70586114-70752224:+,BACE2->beta-site_APP-cleaving_enzyme_2,chr21:42539728-42654445:+	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	THRAP3--HP1BP3	2	0	THRAP3	3151	chr1:36725085:+	HP1BP3	27101	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TMEM184B--CSNK1E	2	0	TMEM184B	4621	chr22:38641941:-	CSNK1E	26710	chr22:38699253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:-:[17657],TMEM184B->chr22:38615298-38669040:-,transmembrane_protein_184B,CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	USP10--COTL1	2	0	USP10	1134	chr16:84733717:+	COTL1	26655	chr16:84623868:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	5	0	TRUE	ACH-000871
NCIH510_LUNG	VPS41--MIPEPP3	2	0	VPS41	4321	chr7:38937691:-	MIPEPP3	43587	chr13:21875558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	VPS41->VPS41,_HOPS_complex_subunit,chr7:38762563-38971994:-,MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3	NCIH510_LUNG	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	NFE2L1--SKAP1	1	3	NFE2L1	8029	chr17:46134864:+	SKAP1	31663	chr17:46211178:-	ONLY_REF_SPLICE	YES	1142	26	0	0.13	0.0108	0.0324	{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[71953],NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,SKAP1->chr17:46210802-46507637:-,src_kinase_associated_phosphoprotein_1	NCIH510_LUNG	0	0.13	0.0432	FALSE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	PPIE--MYCL	1	3	PPIE	14366	chr1:40218724:+	MYCL	25355	chr1:40363642:-	ONLY_REF_SPLICE	YES	3809	3951	0	0	0.0108	0.0324	PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH510_LUNG	0	0	0.0432	FALSE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	ADCY2--PRDM16	1	2	ADCY2	3659	chr5:7521012:+	PRDM16	71734	chr1:3347436:+	ONLY_REF_SPLICE	YES	27	0	0.1	1	0.0108	0.0216	ADCY2->adenylate_cyclase_2_(brain),chr5:7396321-7830194:+,PRDM16->Oncogene{Bushman},PR_domain_16,chr1:2985732-3355185:+	NCIH510_LUNG	0.1	1	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	LINC01014--KCNMB2	1	2	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	2	24	0.6	0.11	0.0108	0.0216	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH510_LUNG	0.11	0.6	0.0324	FALSE	12	33	18	33	0	FALSE	ACH-000871
NCIH510_LUNG	OXR1--PTK2	1	2	OXR1	4606	chr8:107531367:+	PTK2	38198	chr8:141958822:-	ONLY_REF_SPLICE	NO	50	146	0.06	0.02	0.0108	0.0216	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	NCIH510_LUNG	0.02	0.06	0.0324	TRUE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	PLCB4--PLCB1	1	2	PLCB4	4901	chr20:9198099:+	PLCB1	58153	chr20:8639185:+	ONLY_REF_SPLICE	YES	22	26	0.12	0.1	0.0108	0.0216	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	NCIH510_LUNG	0.1	0.12	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	42	0.3	0.07	0.0108	0.0216	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH510_LUNG	0.07	0.3	0.0324	FALSE	0	48	1	163	0	FALSE	ACH-000871
NCIH510_LUNG	RP5-864K19.4--GRIK3	1	2	RP5-864K19.4	3456	chr1:39341690:+	GRIK3	20757	chr1:37291427:-	ONLY_REF_SPLICE	YES	19	153	0.14	0.02	0.0108	0.0216	RP5-864K19.4->chr1:39325672-39385068:+,GRIK3->chr1:37261128-37499730:-,glutamate_ionotropic_receptor_kainate_type_subunit_3	NCIH510_LUNG	0.02	0.14	0.0324	TRUE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	STX18-AS1--MSX1	1	2	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	1	17	0.75	0.15	0.0108	0.0216	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	NCIH510_LUNG	0.15	0.75	0.0324	TRUE	37	101	7	40	0	FALSE	ACH-000871
NCIH510_LUNG	AC073283.4--EPCAM	1	1	AC073283.4	1174	chr2:47572040:-	EPCAM	20907	chr2:47606092:+	ONLY_REF_SPLICE	YES	2	2101	0.5	0	0.0108	0.0108	LOCAL_INVERSION:-:+:[84],AC073283.4->chr2:47419544-47572213:-,EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule	NCIH510_LUNG	0	0.5	0.0216	FALSE	0	5	0	5	2	FALSE	ACH-000871
NCIH510_LUNG	AC073283.4--EPCAM	1	1	AC073283.4	1174	chr2:47572040:-	EPCAM	18777	chr2:47602373:+	ONLY_REF_SPLICE	YES	2	1658	0.5	0	0.0108	0.0108	LOCAL_INVERSION:-:+:[84],AC073283.4->chr2:47419544-47572213:-,EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule	NCIH510_LUNG	0	0.5	0.0216	FALSE	0	3	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	C14orf37--PSMA3	1	1	C14orf37	1185	chr14:58764673:-	PSMA3	29605	chr14:58734192:+	ONLY_REF_SPLICE	YES	0	513	1	0	0.0108	0.0108	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	NCIH510_LUNG	0	1	0.0216	FALSE	0	2	0	2	0	FALSE	ACH-000871
NCIH510_LUNG	C14orf37--PSMA3	1	1	C14orf37	2258	chr14:58758353:-	PSMA3	29605	chr14:58734192:+	ONLY_REF_SPLICE	YES	0	513	1	0	0.0108	0.0108	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	NCIH510_LUNG	0	1	0.0216	FALSE	0	1	0	2	0	FALSE	ACH-000871
NCIH510_LUNG	DOK6--RTTN	1	1	DOK6	2364	chr18:67231830:+	RTTN	58044	chr18:67742777:-	ONLY_REF_SPLICE	YES	141	23	0.01	0.08	0.0108	0.0108	DOK6->chr18:67068291-67516323:+,docking_protein_6,RTTN->chr18:67671029-67873181:-,rotatin	NCIH510_LUNG	0.01	0.08	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	EXOC4--CHCHD3	1	1	EXOC4	9042	chr7:133059756:+	CHCHD3	46755	chr7:132709387:-	ONLY_REF_SPLICE	YES	59	159	0.03	0.01	0.0108	0.0108	GTEx_v2:{count=5;pct=0.06%;dist=Lung=1,Artery_-_Aorta=1,Thyroid=1,Adipose_-_Visceral_(Omentum)=1,Spleen=1},EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3	NCIH510_LUNG	0.01	0.03	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	FAM53A--NELFA	1	1	FAM53A	5655	chr4:1656705:-	NELFA	30938	chr4:1985840:-	ONLY_REF_SPLICE	YES	0	165	1	0.01	0.0108	0.0108	FAM53A->chr4:1619642-1686029:-,family_with_sequence_similarity_53_member_A,NELFA->chr4:1984441-2043630:-,negative_elongation_factor_complex_member_A	NCIH510_LUNG	0.01	1	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	HS2ST1--SH3GLB1	1	1	HS2ST1	1513	chr1:87380843:+	SH3GLB1	26932	chr1:87185190:+	ONLY_REF_SPLICE	YES	354	442	0.01	0	0.0108	0.0108	HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SH3GLB1->SH3_domain_containing_GRB2_like_endophilin_B1,chr1:87170259-87213867:+	NCIH510_LUNG	0	0.01	0.0216	FALSE	0	2	0	1	2	FALSE	ACH-000871
NCIH510_LUNG	IER3IP1--SMAD2	1	1	IER3IP1	1188	chr18:44702558:-	SMAD2	15011	chr18:45423180:-	ONLY_REF_SPLICE	YES	306	54	0.01	0.04	0.0108	0.0108	IER3IP1->chr18:44661027-44702652:-,chr18:44681413-44702745:-,immediate_early_response_3_interacting_protein_1,SMAD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_2,chr18:45357922-45457515:-	NCIH510_LUNG	0.01	0.04	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	LPHN3--ITSN1	1	1	LPHN3	1508	chr4:62067483:+	ITSN1	50626	chr21:35091102:+	ONLY_REF_SPLICE	NO	0	34	1	0.06	0.0108	0.0108	LPHN3->chr4:62066976-62944053:+,ITSN1->chr21:35014706-35272165:+,intersectin_1	NCIH510_LUNG	0.06	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	PICALM--SYTL2	1	1	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	158	3	0.01	0.4	0.0108	0.0108	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	NCIH510_LUNG	0.01	0.4	0.0216	FALSE	4	2	0	20	0	FALSE	ACH-000871
NCIH510_LUNG	PPIE--MYCL	1	1	PPIE	13223	chr1:40214760:+	MYCL	25355	chr1:40363642:-	ONLY_REF_SPLICE	YES	4241	3951	0	0	0.0108	0.0108	PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH510_LUNG	0	0	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	RP11-387D10.2--KCNJ6	1	1	RP11-387D10.2	3420	chr15:91256398:-	KCNJ6	12599	chr21:39087434:-	ONLY_REF_SPLICE	YES	2	2	0.5	0.5	0.0108	0.0108	RP11-387D10.2->chr15:91163239-91260372:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	NCIH510_LUNG	0.5	0.5	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	RP11-89K10.1--RP11-103H7.3	1	1	RP11-89K10.1	2156	chr8:127601535:+	RP11-103H7.3	15682	chr8:127534446:+	ONLY_REF_SPLICE	NO	1	0	0.67	1	0.0108	0.0108	LOCAL_REARRANGEMENT:+:[35524],RP11-89K10.1->chr8:127570120-127725660:+,RP11-103H7.3->chr8:127530943-127534596:+	NCIH510_LUNG	0.67	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	SDK2--ZNF652	1	1	SDK2	17682	chr17:71415305:-	ZNF652	56947	chr17:47395345:-	ONLY_REF_SPLICE	YES	17	3	0.11	0.4	0.0108	0.0108	SDK2->chr17:71330523-71640228:-,sidekick_cell_adhesion_molecule_2,ZNF652->chr17:47366568-47439835:-,zinc_finger_protein_652	NCIH510_LUNG	0.11	0.4	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000871
NCIH510_LUNG	TARDBP--SRM	1	1	TARDBP	7405	chr1:11080656:+	SRM	19010	chr1:11115141:-	ONLY_REF_SPLICE	YES	1249	1508	0	0	0.0108	0.0108	GTEx_v2:{count=2;pct=0.02%;dist=Uterus=1,Adipose_-_Visceral_(Omentum)=1},LOCAL_INVERSION:+:-:[28845],TARDBP->TAR_DNA_binding_protein,chr1:11072414-11085796:+,SRM->chr1:11114641-11120081:-,spermidine_synthase	NCIH510_LUNG	0	0	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	TARDBP--SRM	1	1	TARDBP	7405	chr1:11080656:+	SRM	17337	chr1:11116814:-	ONLY_REF_SPLICE	NO	1249	1340	0	0	0.0108	0.0108	GTEx_v2:{count=2;pct=0.02%;dist=Uterus=1,Adipose_-_Visceral_(Omentum)=1},LOCAL_INVERSION:+:-:[28845],TARDBP->TAR_DNA_binding_protein,chr1:11072414-11085796:+,SRM->chr1:11114641-11120081:-,spermidine_synthase	NCIH510_LUNG	0	0	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000871
NCIH510_LUNG	USP10--COTL1	1	1	USP10	7066	chr16:84767109:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	337	1904	0.01	0	0.0108	0.0108	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	NCIH510_LUNG	0	0.01	0.0216	FALSE	0	0	0	5	0	FALSE	ACH-000871
NCIH510_LUNG	ZNF326--RFWD2	1	1	ZNF326	3297	chr1:90470651:+	RFWD2	42676	chr1:175996824:-	ONLY_REF_SPLICE	YES	242	81	0.01	0.02	0.0108	0.0108	ZNF326->chr1:90460671-90501090:+,zinc_finger_protein_326,RFWD2->chr1:175913967-176176629:-,ring_finger_and_WD_repeat_domain_2	NCIH510_LUNG	0.01	0.02	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000871
MDST8_LARGE_INTESTINE	TIMM23B--LINC00843	111	36	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5685	0.5087	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MDST8_LARGE_INTESTINE	1	1	2.0772	TRUE	508	994	45	981	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	TIMM23--RP11-464F9.1	49	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	265	2	0.16	0.96	0.6924	0.0283	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MDST8_LARGE_INTESTINE	0.16	0.96	0.7207	TRUE	519	3926	326	965	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	RP11-440L14.1--CPLX1	33	1	RP11-440L14.1	1078	chr4:775560:-	CPLX1	13252	chr4:780486:-	ONLY_REF_SPLICE	YES	0	3	1	0.92	0.4663	0.0141	GTEx_FI:{Adipose_Tissue=[count:2=pct:0.7],Ovary=[count:1=pct:1.9],Blood=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:-:[3108],RP11-440L14.1->chr4:756175-775637:-,CPLX1->chr4:778745-819986:-,complexin_1	MDST8_LARGE_INTESTINE	0.92	1	0.4804	TRUE	1	4	0	1	4	TRUE	ACH-000935
MDST8_LARGE_INTESTINE	RAB8B--RP11-321G12.1	30	10	RAB8B	1280	chr15:63481947:+	RP11-321G12.1	21602	chr15:63690586:+	ONLY_REF_SPLICE	YES	38	0	0.51	1	0.4239	0.1413	RAB8B->RAB8B,_member_RAS_oncogene_family,chr15:63481668-63559981:+,RP11-321G12.1->chr15:63682335-63729347:+	MDST8_LARGE_INTESTINE	0.51	1	0.5652	TRUE	0	0	0	1	0	TRUE	ACH-000935
MDST8_LARGE_INTESTINE	MT-TA--MT-TC	21	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2967	0.0141	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDST8_LARGE_INTESTINE	1	1	0.3108	FALSE	462	80	0	856	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	ZNF654--HMGB2	16	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2261	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MDST8_LARGE_INTESTINE	1	1	0.2261	TRUE	0	0	0	518	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	RP11-634B7.4--TRIM58	9	7	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	8	1	0.67	0.1272	0.0989	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	MDST8_LARGE_INTESTINE	0.67	1	0.2261	TRUE	158	633	76	73	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	RP1-34H18.1--NAV3	9	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1272	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	MDST8_LARGE_INTESTINE	1	1	0.1272	TRUE	254	575	65	124	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	AC139887.4--CPLX1	7	4	AC139887.4	1586	chr4:758277:-	CPLX1	9265	chr4:780486:-	INCL_NON_REF_SPLICE	YES	0	3	1	0.79	0.0989	0.0565	LOCAL_REARRANGEMENT:-:[19883],AC139887.4->chr4:758275-758862:-,CPLX1->chr4:778745-819986:-,complexin_1	MDST8_LARGE_INTESTINE	0.79	1	0.1554	TRUE	0	2	0	1	2	TRUE	ACH-000935
MDST8_LARGE_INTESTINE	RP11-444D3.1--SOX5	7	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0989	0.0565	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MDST8_LARGE_INTESTINE	1	1	0.1554	TRUE	477	1352	189	275	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	KANSL1--ARL17B	6	5	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	12	29	0.48	0.28	0.0848	0.0707	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	MDST8_LARGE_INTESTINE	0.28	0.48	0.1555	TRUE	181	1564	124	196	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	6	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.82	0.9	0.0848	0.0424	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDST8_LARGE_INTESTINE	0.82	0.9	0.1272	FALSE	515	4851	409	746	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	RP11-680G10.1--GSE1	6	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0848	0.0283	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MDST8_LARGE_INTESTINE	1	1	0.1131	TRUE	465	1949	224	605	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	NPM1P24--SET	6	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0848	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MDST8_LARGE_INTESTINE	1	1	0.0848	TRUE	0	0	0	434	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	RPSAP52--HMGA2	5	3	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	23	355	0.26	0.02	0.0707	0.0424	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	MDST8_LARGE_INTESTINE	0.02	0.26	0.1131	FALSE	0	59	0	125	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	MT-TA--MT-TC	5	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0707	0.0141	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MDST8_LARGE_INTESTINE	1	1	0.0848	FALSE	462	80	0	856	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	4	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0565	0.0707	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDST8_LARGE_INTESTINE	0.82	1	0.1272	FALSE	407	2205	196	549	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	APP--MT-CO3	5	0	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0707	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MDST8_LARGE_INTESTINE	1	1	0.0707	FALSE	0	0	0	26	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0565	0.0141	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDST8_LARGE_INTESTINE	1	1	0.0706	FALSE	292	1546	117	613	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	C15orf57--CBX3	3	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	66	12	0.08	0.33	0.0424	0.0424	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MDST8_LARGE_INTESTINE	0.08	0.33	0.0848	TRUE	267	562	48	632	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	RC3H1--RP11-160H22.5	3	0	RC3H1	7810	chr1:173947626:-	RP11-160H22.5	36278	chr1:174084787:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0424	0	LOCAL_REARRANGEMENT:-:[93003],RC3H1->chr1:173900352-173991435:-,ring_finger_and_CCCH-type_domains_1,RP11-160H22.5->chr1:174084438-174129142:-	MDST8_LARGE_INTESTINE	1	1	0.0424	TRUE	0	0	0	1	0	TRUE	ACH-000935
MDST8_LARGE_INTESTINE	VIM--ACTB	3	0	VIM	2082	chr10:17271339:+	ACTB	15618	chr7:5570234:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0424	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MDST8_LARGE_INTESTINE	1	1	0.0424	TRUE	0	0	0	9	0	TRUE	ACH-000935
MDST8_LARGE_INTESTINE	NRIP1--AF127936.7	2	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.26	1	0.0283	0.0424	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDST8_LARGE_INTESTINE	0.26	1	0.0707	FALSE	125	705	46	456	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.83	0.83	0.0283	0.0424	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDST8_LARGE_INTESTINE	0.83	0.83	0.0707	FALSE	467	2173	244	435	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	RP11-307P5.1--SASH1	2	2	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	3	1	0.57	0.0283	0.0283	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	MDST8_LARGE_INTESTINE	0.57	1	0.0566	TRUE	0	2	0	37	2	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	RP11-680G10.1--GSE1	2	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0.0283	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MDST8_LARGE_INTESTINE	1	1	0.0566	TRUE	458	1351	185	561	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	R3HDM1--UBXN4	2	1	R3HDM1	1179	chr2:136289203:+	UBXN4	44043	chr2:136519388:+	ONLY_REF_SPLICE	YES	38	95	0.07	0.03	0.0283	0.0141	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[16349],R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+,UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+	MDST8_LARGE_INTESTINE	0.03	0.07	0.0424	FALSE	0	0	0	1	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	RP11-444D3.1--BCAT1	2	1	RP11-444D3.1	1253	chr12:24715272:-	BCAT1	16803	chr12:25054819:-	ONLY_REF_SPLICE	YES	5	33	0.38	0.08	0.0283	0.0141	RP11-444D3.1->chr12:24366190-24715524:-,BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-	MDST8_LARGE_INTESTINE	0.08	0.38	0.0424	TRUE	0	0	0	2	0	TRUE	ACH-000935
MDST8_LARGE_INTESTINE	NRIP1--AF127936.7	1	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.24	1	0.0141	0.0565	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDST8_LARGE_INTESTINE	0.24	1	0.0706	FALSE	164	806	69	479	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	RP1-34H18.1--RP11-781A6.1	2	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	MDST8_LARGE_INTESTINE	1	1	0.0283	TRUE	94	160	11	37	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	RP11-444D3.1--SOX5	1	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0141	0.0565	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MDST8_LARGE_INTESTINE	1	1	0.0706	TRUE	160	277	29	98	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	SULT1B1--CHMP1A	2	0	SULT1B1	6393	chr4:70615439:-	CHMP1A	24243	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GTEx&tcga_normals:1/3694=0.03%,SULT1B1->chr4:70586880-70653679:-,sulfotransferase_family_1B_member_1,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	MDST8_LARGE_INTESTINE	1	1	0.0283	TRUE	0	1	1	1	1	TRUE	ACH-000935
MDST8_LARGE_INTESTINE	ZNF519--CHMP1A	2	0	ZNF519	2343	chr18:14124349:-	CHMP1A	27273	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Muscularis=1},ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	MDST8_LARGE_INTESTINE	1	1	0.0283	TRUE	1	2	0	4	2	TRUE	ACH-000935
MDST8_LARGE_INTESTINE	CCBE1--FAM168A	1	1	CCBE1	1752	chr18:57363861:-	FAM168A	21445	chr11:73179537:-	ONLY_REF_SPLICE	YES	71	75	0.03	0.03	0.0141	0.0141	CCBE1->chr18:57098172-57364612:-,collagen_and_calcium_binding_EGF_domains_1,FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A	MDST8_LARGE_INTESTINE	0.03	0.03	0.0282	TRUE	0	0	0	1	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	R3HDM1--UBXN4	1	1	R3HDM1	1179	chr2:136289203:+	UBXN4	45137	chr2:136527339:+	ONLY_REF_SPLICE	NO	38	86	0.05	0.02	0.0141	0.0141	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[16349],R3HDM1->R3H_domain_containing_1,chr2:136289025-136482840:+,UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+	MDST8_LARGE_INTESTINE	0.02	0.05	0.0282	FALSE	0	0	0	1	0	FALSE	ACH-000935
MDST8_LARGE_INTESTINE	TXNL4A--C18orf25	1	1	TXNL4A	5001	chr18:77748240:-	C18orf25	17232	chr18:43795777:+	ONLY_REF_SPLICE	YES	223	31	0.01	0.06	0.0141	0.0141	TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A,C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25	MDST8_LARGE_INTESTINE	0.01	0.06	0.0282	FALSE	0	0	0	1	0	FALSE	ACH-000935
TE4_OESOPHAGUS	TIMM23B--LINC00843	28	10	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4676	0.167	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TE4_OESOPHAGUS	1	1	0.6346	TRUE	508	994	45	981	0	FALSE	ACH-000917
TE4_OESOPHAGUS	MYO1E--RP11-507B12.2	28	6	MYO1E	30587	chr15:59445789:-	RP11-507B12.2	42278	chr15:61592738:-	ONLY_REF_SPLICE	YES	40	0	0.46	1	0.4676	0.1002	MYO1E->chr15:59427113-59665099:-,myosin_IE,RP11-507B12.2->chr15:61592525-61927648:-	TE4_OESOPHAGUS	0.46	1	0.5678	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	PAPOLA--GSKIP	22	5	PAPOLA	2168	chr14:96968937:+	GSKIP	39454	chr14:96851860:+	ONLY_REF_SPLICE	YES	24	13	0.53	0.68	0.3674	0.0835	PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,GSKIP->GSK3B_interacting_protein,chr14:96829814-96853625:+	TE4_OESOPHAGUS	0.53	0.68	0.4509	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	TIMM23--RP11-464F9.1	16	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	80	1	0.18	0.95	0.2672	0.0334	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TE4_OESOPHAGUS	0.18	0.95	0.3006	TRUE	519	3926	326	965	0	FALSE	ACH-000917
TE4_OESOPHAGUS	INTS3--S100A7A	11	0	INTS3	12021	chr1:153730239:+	S100A7A	31529	chr1:153390542:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1837	0	INTS3->chr1:153700543-153746555:+,integrator_complex_subunit_3,S100A7A->S100_calcium_binding_protein_A7A,chr1:153389000-153395701:+	TE4_OESOPHAGUS	1	1	0.1837	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	TAOK1--NLK	7	4	TAOK1	1561	chr17:27718042:+	NLK	51940	chr17:26512205:+	ONLY_REF_SPLICE	YES	1	5	0.92	0.69	0.1169	0.0668	PROTCLUST,TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,NLK->chr17:26368763-26523407:+,nemo_like_kinase	TE4_OESOPHAGUS	0.69	0.92	0.1837	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	C15orf57--CBX3	6	1	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	23	4	0.23	0.64	0.1002	0.0167	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TE4_OESOPHAGUS	0.23	0.64	0.1169	TRUE	267	562	48	632	0	FALSE	ACH-000917
TE4_OESOPHAGUS	BCAS3--TEC	5	1	BCAS3	16133	chr17:58964572:+	TEC	74793	chr4:48143436:-	ONLY_REF_SPLICE	YES	0	5	1	0.55	0.0835	0.0167	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,TEC->chr4:48137800-48271881:-,tec_protein_tyrosine_kinase	TE4_OESOPHAGUS	0.55	1	0.1002	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	MT-ND6--MT-TE	5	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0835	0.0167	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE4_OESOPHAGUS	1	1	0.1002	FALSE	499	1288	110	792	0	FALSE	ACH-000917
TE4_OESOPHAGUS	MT-ND6--MT-TE	4	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0668	0.0668	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE4_OESOPHAGUS	1	1	0.1336	FALSE	499	1288	110	792	0	FALSE	ACH-000917
TE4_OESOPHAGUS	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0835	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TE4_OESOPHAGUS	1	1	0.0835	TRUE	465	1949	224	605	0	FALSE	ACH-000917
TE4_OESOPHAGUS	RP11-123O10.4--GRIP1	4	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0668	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TE4_OESOPHAGUS	1	1	0.0668	FALSE	416	2512	207	587	0	FALSE	ACH-000917
TE4_OESOPHAGUS	AP000304.12--MCM3	3	0	AP000304.12	3253	chr21:35279678:-	MCM3	22974	chr6:52130166:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	AP000304.12->chr21:34956993-35284635:-,MCM3->chr6:52128807-52149679:-,minichromosome_maintenance_complex_component_3	TE4_OESOPHAGUS	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	ATP13A1--FARSB	3	0	ATP13A1	7850	chr19:19766006:-	FARSB	23602	chr2:223507603:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	ATP13A1->ATPase_13A1,chr19:19756007-19774502:-,FARSB->chr2:223435255-223521056:-,phenylalanyl-tRNA_synthetase_beta_subunit	TE4_OESOPHAGUS	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	BFSP1--STRBP	3	0	BFSP1	4872	chr20:17539333:-	STRBP	25092	chr9:125946577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0501	0	BFSP1->beaded_filament_structural_protein_1,chr20:17474550-17549865:-,STRBP->chr9:125871779-126030855:-,spermatid_perinuclear_RNA_binding_protein	TE4_OESOPHAGUS	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	LYPD1--FOXJ3	3	0	LYPD1	6186	chr2:133403625:-	FOXJ3	23213	chr1:42657057:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	LYPD1->LY6/PLAUR_domain_containing_1,chr2:133402426-133429152:-,FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3	TE4_OESOPHAGUS	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	MAN1A2--FAM46C	3	0	MAN1A2	2037	chr1:117911107:+	FAM46C	27888	chr1:118165464:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0501	0	NEIGHBORS[77062],MAN1A2->chr1:117910071-118071494:+,mannosidase_alpha_class_1A_member_2,FAM46C->ArcherDX_panel,FoundationOne_panel,chr1:118148556-118170994:+,family_with_sequence_similarity_46_member_C	TE4_OESOPHAGUS	1	1	0.0501	FALSE	0	0	0	1	0	FALSE	ACH-000917
TE4_OESOPHAGUS	RAD1--ATP5G3	3	0	RAD1	3979	chr5:34915831:-	ATP5G3	18525	chr2:176046398:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	RAD1->RAD1_checkpoint_DNA_exonuclease,chr5:34905369-34919094:-,ATP5G3->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C3_(subunit_9),chr2:176040986-176049335:-	TE4_OESOPHAGUS	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	SH3GLB2--PYGB	3	0	SH3GLB2	11875	chr9:131770752:-	PYGB	37439	chr20:25277700:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	SH3GLB2->SH3_domain_containing_GRB2_like_endophilin_B2,chr9:131769315-131790582:-,PYGB->chr20:25228705-25278650:+,phosphorylase,_glycogen;_brain	TE4_OESOPHAGUS	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	XRCC6--NOB1	3	0	XRCC6	4673	chr22:42032620:+	NOB1	21225	chr16:69782172:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+,NOB1->NIN1/PSMD8_binding_protein_1_homolog,chr16:69775770-69788843:-	TE4_OESOPHAGUS	1	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	C17orf76-AS1--RBBP7	2	0	C17orf76-AS1	1593	chr17:16342728:+	RBBP7	14397	chrX:16887343:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	C17orf76-AS1->chr17:16342136-16381992:+,RBBP7->Oncogene{Bushman},chrX:16857406-16888537:-,retinoblastoma_binding_protein_7	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	CCDC101--NPC1	2	0	CCDC101	2273	chr16:28592465:+	NPC1	25506	chr18:21125113:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	CCDC101->chr16:28565236-28603111:+,NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	CTD-2369P2.10--RAVER1	2	0	CTD-2369P2.10	5380	chr19:10418861:-	RAVER1	12326	chr19:10439787:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:-:[203],CTD-2369P2.10->chr19:10416103-10426685:-,RAVER1->chr19:10426888-10444316:-,ribonucleoprotein,_PTB_binding_1	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	ELF2--CANX	2	0	ELF2	11008	chr4:140005287:-	CANX	44991	chr5:179155592:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,CANX->calnexin,chr5:179105629-179157926:+	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	FCHSD2--NUMA1	2	0	FCHSD2	1405	chr11:72852902:-	NUMA1	43541	chr11:71747021:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	GOSR1--CDK12	2	0	GOSR1	10351	chr17:28819771:+	CDK12	28391	chr17:37646810:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	NAGK--GNB2L1	2	0	NAGK	5920	chr2:71297969:+	GNB2L1	25805	chr5:180665239:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	NAGK->N-acetylglucosamine_kinase,chr2:71291474-71306935:+,GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	NDUFAF6--CHD7	2	0	NDUFAF6	1161	chr8:95908155:+	CHD7	38153	chr8:61653818:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	NDUFAF6->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_6,chr8:95907995-96128683:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	NOTCH3--RAB8A	2	0	NOTCH3	2273	chr19:15308311:-	RAB8A	37719	chr19:16243022:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	NOTCH3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:15270444-15311792:-,notch_3,RAB8A->Oncogene{Bushman},RAB8A,_member_RAS_oncogene_family,chr19:16222439-16245044:+	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	RHOA--TTC19	2	0	RHOA	2179	chr3:49449253:-	TTC19	21578	chr17:15928331:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,TTC19->chr17:15902694-15948329:+,tetratricopeptide_repeat_domain_19	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	SENP1--MAPRE1	2	0	SENP1	9371	chr12:48477374:-	MAPRE1	34304	chr20:31436478:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	SENP1->SUMO1/sentrin_specific_peptidase_1,chr12:48436681-48500091:-,MAPRE1->Oncogene{Bushman},chr20:31407699-31438211:+,microtubule_associated_protein_RP/EB_family_member_1	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	SRP14-AS1--SNHG15	2	0	SRP14-AS1	2247	chr15:40338270:+	SNHG15	13218	chr7:45024025:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	HGNC_GENEFAM,SRP14-AS1->SRP14_antisense_RNA1_(head_to_head),chr15:40331512-40359491:+,SNHG15->chr7:45022622-45026560:-,small_nucleolar_RNA_host_gene_15	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	STRN3--SCFD1	2	0	STRN3	1498	chr14:31495110:-	SCFD1	47090	chr14:31163979:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	{Klijn_CCL:Brain=1,Liver=1},STRN3->chr14:31363005-31495607:-,striatin_3,SCFD1->chr14:31091318-31205018:+,sec1_family_domain_containing_1	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	TASP1--ZNF839	2	0	TASP1	12602	chr20:13539655:-	ZNF839	28412	chr14:102792322:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	TASP1->chr20:13246709-13619587:-,taspase_1,ZNF839->chr14:102783714-102809044:+,zinc_finger_protein_839	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	TET2--PPA2	2	0	TET2	4071	chr4:106111662:+	PPA2	47041	chr4:106292030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1,Heart_-_Atrial_Appendage=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[89261],TET2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:106067032-106200973:+,tet_methylcytosine_dioxygenase_2,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	WDFY3--PPA2	2	0	WDFY3	3377	chr4:85818064:-	PPA2	98130	chr4:106320321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	WDFY3->WD_repeat_and_FYVE_domain_containing_3,chr4:85590704-85887544:-,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	TE4_OESOPHAGUS	1	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	SLC45A4--UGT3A2	1	3	SLC45A4	2851	chr8:142264088:-	UGT3A2	23916	chr5:36064452:-	ONLY_REF_SPLICE	YES	6	0	0.4	1	0.0167	0.0501	SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4,UGT3A2->UDP_glycosyltransferase_family_3_member_A2,chr5:36035119-36071460:-	TE4_OESOPHAGUS	0.4	1	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	KLF12--SCEL	1	2	KLF12	4990	chr13:74419964:-	SCEL	23361	chr13:78129992:+	ONLY_REF_SPLICE	YES	0	6	1	0.33	0.0167	0.0334	KLF12->Kruppel-like_factor_12,chr13:74260226-74708394:-,SCEL->chr13:78109809-78219398:+,sciellin	TE4_OESOPHAGUS	0.33	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	PPP6R3--IKZF3	1	2	PPP6R3	2237	chr11:68272739:+	IKZF3	47721	chr17:37922746:-	ONLY_REF_SPLICE	YES	20	0	0.13	1	0.0167	0.0334	PPP6R3->chr11:68228186-68382802:+,protein_phosphatase_6_regulatory_subunit_3,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	TE4_OESOPHAGUS	0.13	1	0.0501	TRUE	0	0	0	1	0	TRUE	ACH-000917
TE4_OESOPHAGUS	EZR--RSPH3	1	1	EZR	2248	chr6:159239114:-	RSPH3	25887	chr6:159399378:-	ONLY_REF_SPLICE	YES	48	5	0.04	0.29	0.0167	0.0167	EZR->chr6:159186773-159240444:-,ezrin,RSPH3->chr6:159393903-159421219:-,radial_spoke_3_homolog	TE4_OESOPHAGUS	0.04	0.29	0.0334	TRUE	0	0	0	3	0	TRUE	ACH-000917
TE4_OESOPHAGUS	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	9	1	0.18	0.0167	0.0167	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TE4_OESOPHAGUS	0.18	1	0.0334	TRUE	458	1351	185	561	0	FALSE	ACH-000917
TE4_OESOPHAGUS	SLC45A4--UGT3A2	1	1	SLC45A4	2851	chr8:142264088:-	UGT3A2	25018	chr5:36052086:-	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0167	0.0167	SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4,UGT3A2->UDP_glycosyltransferase_family_3_member_A2,chr5:36035119-36071460:-	TE4_OESOPHAGUS	0.25	1	0.0334	TRUE	0	0	0	1	0	TRUE	ACH-000917
A673_BONE	EWSR1--FLI1	319	137	EWSR1	11554	chr22:29683123:+	FLI1	37654	chr11:128675261:+	ONLY_REF_SPLICE	YES	410	3	0.53	0.99	2.8901	1.2412	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	A673_BONE	0.53	0.99	4.1313	TRUE	0	0	0	6	0	TRUE	ACH-000052
A673_BONE	SUPT20H--CHRDL2	94	16	SUPT20H	1155	chr13:37633696:-	CHRDL2	46537	chr11:74408342:-	ONLY_REF_SPLICE	YES	22	0	0.83	1	0.8516	0.145	SUPT20H->SPT20_homolog,_SAGA_complex_component,chr13:37583449-37633850:-,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	A673_BONE	0.83	1	0.9966	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	TIMM23B--LINC00843	78	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.7067	0.1812	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	A673_BONE	0.98	1	0.8879	TRUE	508	994	45	981	0	FALSE	ACH-000052
A673_BONE	ZNF654--HMGB2	71	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6432	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	A673_BONE	1	1	0.6432	TRUE	0	0	0	518	0	FALSE	ACH-000052
A673_BONE	TIMM23--RP11-464F9.1	58	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	224	3	0.22	0.95	0.5255	0.0362	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	A673_BONE	0.22	0.95	0.5617	TRUE	519	3926	326	965	0	FALSE	ACH-000052
A673_BONE	AC005562.1--SP2	49	17	AC005562.1	8359	chr17:28937960:+	SP2	20548	chr17:45992678:+	ONLY_REF_SPLICE	YES	24	1	0.73	0.99	0.4439	0.154	AC005562.1->chr17:28903482-28999807:+,SP2->Sp2_transcription_factor,chr17:45973516-46006323:+	A673_BONE	0.73	0.99	0.5979	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	RP11-680G10.1--GSE1	45	23	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.87	0.4077	0.2084	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A673_BONE	0.87	1	0.6161	TRUE	458	1351	185	561	0	FALSE	ACH-000052
A673_BONE	LINC00221--SPG7	47	7	LINC00221	8624	chr14:106962380:+	SPG7	24377	chr16:89592737:+	ONLY_REF_SPLICE	YES	0	61	1	0.47	0.4258	0.0634	LINC00221->chr14:106938445-106977000:+,long_intergenic_non-protein_coding_RNA_221,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	A673_BONE	0.47	1	0.4892	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	RP11-444D3.1--SOX5	44	8	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.98	0.3986	0.0725	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	A673_BONE	0.98	1	0.4711	TRUE	477	1352	189	275	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ND4L	5	135	MT-ND4	1942	chrM:11701:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	10378	0	0.01	1	0.0453	1.2231	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A673_BONE	0.01	1	1.2684	FALSE	344	827	44	306	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ND4L	5	129	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	17	0	0.89	1	0.0453	1.1687	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A673_BONE	0.89	1	1.214	FALSE	344	826	44	306	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ND4L	3	133	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	340	0	0.29	1	0.0272	1.2049	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A673_BONE	0.29	1	1.2321	FALSE	344	827	44	306	0	FALSE	ACH-000052
A673_BONE	PTMA--PTMS	35	1	PTMA	6054	chr2:232576687:+	PTMS	13973	chr12:6879338:+	INCL_NON_REF_SPLICE	YES	3471	443	0.01	0.08	0.3171	0.0091	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	A673_BONE	0.01	0.08	0.3262	TRUE	0	0	0	16	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ND4L	3	128	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	10	0	0.93	1	0.0272	1.1596	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A673_BONE	0.93	1	1.1868	FALSE	344	826	44	306	0	FALSE	ACH-000052
A673_BONE	RP11-680G10.1--GSE1	31	12	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	34	1	0.56	0.2809	0.1087	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A673_BONE	0.56	1	0.3896	TRUE	465	1949	224	605	0	FALSE	ACH-000052
A673_BONE	MT-TA--MT-TC	27	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2446	0.0362	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A673_BONE	1	1	0.2808	FALSE	462	80	0	856	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ND4L	5	85	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	0	0.96	1	0.0453	0.7701	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A673_BONE	0.96	1	0.8154	FALSE	344	821	44	306	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ND4L	3	92	MT-ND4	1164	chrM:10923:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	21	0	0.82	1	0.0272	0.8335	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A673_BONE	0.82	1	0.8607	FALSE	344	826	44	306	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ND4L	3	90	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	38	0	0.71	1	0.0272	0.8154	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A673_BONE	0.71	1	0.8426	FALSE	344	827	44	306	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO2	23	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	55	8	0.33	0.77	0.2084	0.0362	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A673_BONE	0.33	0.77	0.2446	FALSE	59	21	0	114	0	FALSE	ACH-000052
A673_BONE	SUPT20H--CHRDL2	17	24	SUPT20H	1234	chr13:37633617:-	CHRDL2	46537	chr11:74408342:-	ONLY_REF_SPLICE	YES	50	0	0.45	1	0.154	0.2174	SUPT20H->SPT20_homolog,_SAGA_complex_component,chr13:37583449-37633850:-,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	A673_BONE	0.45	1	0.3714	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	EWSR1--FLI1	2	76	EWSR1	11554	chr22:29683123:+	FLI1	39468	chr11:128677075:+	ONLY_REF_SPLICE	YES	410	3	0.16	0.96	0.0181	0.6885	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	A673_BONE	0.16	0.96	0.7066	TRUE	0	0	0	4	0	TRUE	ACH-000052
A673_BONE	MT-ND6--MT-TE	17	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.154	0.1087	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A673_BONE	0.88	1	0.2627	FALSE	499	1288	110	792	0	FALSE	ACH-000052
A673_BONE	LINC00221--SPG7	19	3	LINC00221	8624	chr14:106962380:+	SPG7	25789	chr16:89595885:+	ONLY_REF_SPLICE	YES	0	82	1	0.21	0.1721	0.0272	LINC00221->chr14:106938445-106977000:+,long_intergenic_non-protein_coding_RNA_221,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	A673_BONE	0.21	1	0.1993	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	CYP7B1--RP11-32K4.1	18	3	CYP7B1	1296	chr8:65711023:-	RP11-32K4.1	24443	chr8:64599789:-	ONLY_REF_SPLICE	YES	17	0	0.55	1	0.1631	0.0272	CYP7B1->Oncogene{Bushman},chr8:65500320-65711318:-,cytochrome_P450_family_7_subfamily_B_member_1,RP11-32K4.1->chr8:64599737-65281115:-	A673_BONE	0.55	1	0.1903	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	AC123023.1--AC018359.1	18	1	AC123023.1	1065	chr3:34244800:+	AC018359.1	7715	chr3:34340345:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1631	0.0091	NEIGHBORS_OVERLAP:+:+:[65567],AC123023.1->chr3:34244736-34310303:+,AC018359.1->chr3:34200826-34604369:+	A673_BONE	1	1	0.1722	FALSE	0	2	0	3	0	FALSE	ACH-000052
A673_BONE	MT-CO3--MT-ATP6	6	47	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	25	3	0.68	0.95	0.0544	0.4258	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A673_BONE	0.68	0.95	0.4802	FALSE	189	492	56	216	0	FALSE	ACH-000052
A673_BONE	MT-CO3--MT-ATP6	3	56	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	YES	72	0	0.45	1	0.0272	0.5073	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A673_BONE	0.45	1	0.5345	FALSE	189	492	56	216	0	FALSE	ACH-000052
A673_BONE	MT-CO3--MT-ATP6	4	51	MT-CO3	1220	chrM:9426:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	72	0	0.43	1	0.0362	0.462	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A673_BONE	0.43	1	0.4982	FALSE	189	492	56	216	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ND4L	10	27	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	5518	0	0.01	1	0.0906	0.2446	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A673_BONE	0.01	1	0.3352	FALSE	344	827	44	306	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO1	16	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	7670	19735	0	0	0.145	0.0091	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A673_BONE	0	0	0.1541	FALSE	183	104	9	328	0	FALSE	ACH-000052
A673_BONE	NPM1P24--SET	16	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.145	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	A673_BONE	1	1	0.145	TRUE	0	0	0	434	0	FALSE	ACH-000052
A673_BONE	MT-CO3--MT-ATP6	3	49	MT-CO3	1138	chrM:9344:+	MT-ATP6	4745	chrM:8487:+	INCL_NON_REF_SPLICE	YES	23	0	0.69	1	0.0272	0.4439	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A673_BONE	0.69	1	0.4711	FALSE	189	492	56	216	0	FALSE	ACH-000052
A673_BONE	MT-CO3--MT-ATP6	3	47	MT-CO3	1075	chrM:9281:+	MT-ATP6	5166	chrM:8908:+	INCL_NON_REF_SPLICE	YES	0	44	1	0.53	0.0272	0.4258	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A673_BONE	0.53	1	0.453	FALSE	189	492	56	216	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ATP8	14	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	9063	3	0	0.84	0.1268	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	0	0.84	0.1449	FALSE	230	193	14	283	0	FALSE	ACH-000052
A673_BONE	EWSR1--FLI1	1	53	EWSR1	11554	chr22:29683123:+	FLI1	40528	chr11:128679052:+	ONLY_REF_SPLICE	YES	410	42	0.12	0.56	0.0091	0.4802	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	A673_BONE	0.12	0.56	0.4893	TRUE	0	0	0	5	0	TRUE	ACH-000052
A673_BONE	MT-ATP6--MT-CO1	12	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8500	20051	0	0	0.1087	0.0091	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A673_BONE	0	0	0.1178	FALSE	183	104	9	328	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ND4L	3	36	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.0272	0.3262	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A673_BONE	0.91	1	0.3534	FALSE	344	821	44	306	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ND4L	8	14	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	34	0	0.39	1	0.0725	0.1268	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A673_BONE	0.39	1	0.1993	FALSE	344	827	44	306	0	FALSE	ACH-000052
A673_BONE	PTMA--PTMS	9	5	PTMA	6053	chr2:232576686:+	PTMS	13737	chr12:6879102:+	INCL_NON_REF_SPLICE	YES	3461	491	0	0.03	0.0815	0.0453	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	A673_BONE	0	0.03	0.1268	TRUE	0	0	0	16	0	FALSE	ACH-000052
A673_BONE	MT-ND3--MT-ATP8	10	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0906	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	1	1	0.0906	FALSE	351	233	23	137	0	FALSE	ACH-000052
A673_BONE	MT-ND6--MT-TE	3	28	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.0272	0.2537	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A673_BONE	0.89	1	0.2809	FALSE	499	1288	110	792	0	FALSE	ACH-000052
A673_BONE	PTMA--PTMS	8	5	PTMA	6054	chr2:232576687:+	PTMS	13958	chr12:6879323:+	INCL_NON_REF_SPLICE	YES	3471	618	0	0.02	0.0725	0.0453	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	A673_BONE	0	0.02	0.1178	TRUE	0	0	0	16	0	FALSE	ACH-000052
A673_BONE	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A673_BONE	1	1	0.0815	FALSE	13	9	0	364	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO2	8	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	55	9	0.18	0.57	0.0725	0.0362	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A673_BONE	0.18	0.57	0.1087	FALSE	59	21	0	114	0	FALSE	ACH-000052
A673_BONE	MT-CO3--MT-ATP6	9	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A673_BONE	1	1	0.0815	FALSE	189	492	56	216	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ATP8	8	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10042	54	0	0.17	0.0725	0.0272	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	0	0.17	0.0997	FALSE	231	217	16	283	0	FALSE	ACH-000052
A673_BONE	MT-CO3--MT-ATP6	5	14	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0453	0.1268	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A673_BONE	0.95	1	0.1721	FALSE	189	492	56	216	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ND4L	3	22	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	25	0	0.5	1	0.0272	0.1993	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A673_BONE	0.5	1	0.2265	FALSE	344	826	44	306	0	FALSE	ACH-000052
A673_BONE	AC123023.1--AC018359.1	8	0	AC123023.1	1065	chr3:34244800:+	AC018359.1	12826	chr3:34450753:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0725	0	NEIGHBORS_OVERLAP:+:+:[65567],AC123023.1->chr3:34244736-34310303:+,AC018359.1->chr3:34200826-34604369:+	A673_BONE	1	1	0.0725	FALSE	1	4	3	3	0	FALSE	ACH-000052
A673_BONE	MT-CO3--MT-ATP6	4	16	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0.145	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A673_BONE	1	1	0.1812	FALSE	189	492	56	216	0	FALSE	ACH-000052
A673_BONE	MT-CO3--MT-ATP6	8	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0725	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A673_BONE	1	1	0.0725	FALSE	189	492	56	216	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ATP8	7	4	MT-ND4	2053	chrM:11812:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9127	54	0	0.17	0.0634	0.0362	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	0	0.17	0.0996	FALSE	231	215	16	283	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO2	7	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	51	8	0.16	0.56	0.0634	0.0272	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A673_BONE	0.16	0.56	0.0906	FALSE	59	21	0	114	0	FALSE	ACH-000052
A673_BONE	EEF1G--UBXN1	6	6	EEF1G	3346	chr11:62340056:-	UBXN1	13633	chr11:62444477:-	ONLY_REF_SPLICE	YES	3109	422	0	0.03	0.0544	0.0544	{Klijn_CCL:Sarcomatoid=1},EEF1G->chr11:62327073-62342401:-,eukaryotic_translation_elongation_factor_1_gamma,UBXN1->UBX_domain_protein_1,chr11:62443970-62446567:-	A673_BONE	0	0.03	0.1088	TRUE	0	0	0	1	0	FALSE	ACH-000052
A673_BONE	PTMA--PTMS	6	6	PTMA	6530	chr2:232577163:+	PTMS	13740	chr12:6879105:+	INCL_NON_REF_SPLICE	NO	3196	503	0	0.02	0.0544	0.0544	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	A673_BONE	0	0.02	0.1088	FALSE	0	0	0	16	0	FALSE	ACH-000052
A673_BONE	RP11-96H19.1--RP11-446N19.1	7	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0634	0.0091	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A673_BONE	1	1	0.0725	FALSE	515	4851	409	746	0	FALSE	ACH-000052
A673_BONE	UBE2G1--MYH2	7	1	UBE2G1	1358	chr17:4269566:-	MYH2	33895	chr17:10431191:-	ONLY_REF_SPLICE	YES	96	0	0.08	1	0.0634	0.0091	UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,MYH2->chr17:10424465-10453274:-,myosin,_heavy_chain_2,_skeletal_muscle,_adult	A673_BONE	0.08	1	0.0725	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	C15orf57--CBX3	6	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	23	22	0.3	0.31	0.0544	0.0362	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A673_BONE	0.3	0.31	0.0906	TRUE	267	562	48	632	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ND4L	4	12	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0362	0.1087	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A673_BONE	0.94	1	0.1449	FALSE	344	821	44	306	0	FALSE	ACH-000052
A673_BONE	SUPT20H--CHRDL2	1	24	SUPT20H	1519	chr13:37633332:-	CHRDL2	46537	chr11:74408342:-	ONLY_REF_SPLICE	YES	50	0	0.33	1	0.0091	0.2174	SUPT20H->SPT20_homolog,_SAGA_complex_component,chr13:37583449-37633850:-,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	A673_BONE	0.33	1	0.2265	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	MT-ND4--MT-ATP8	6	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10382	5	0	0.64	0.0544	0.0272	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	0	0.64	0.0816	FALSE	231	217	16	283	0	FALSE	ACH-000052
A673_BONE	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0.0272	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A673_BONE	1	1	0.0816	FALSE	462	80	0	856	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO2	5	6	MT-ATP6	1291	chrM:8817:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	95	9	0.1	0.55	0.0453	0.0544	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A673_BONE	0.1	0.55	0.0997	FALSE	59	21	0	114	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO2	3	14	MT-ATP6	1575	chrM:9101:+	MT-CO2	4747	chrM:7651:+	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0272	0.1268	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A673_BONE	0.89	1	0.154	FALSE	59	21	0	114	0	FALSE	ACH-000052
A673_BONE	MT-CO3--MT-ATP6	3	14	MT-CO3	1205	chrM:9411:+	MT-ATP6	5416	chrM:9158:+	INCL_NON_REF_SPLICE	YES	70	0	0.2	1	0.0272	0.1268	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A673_BONE	0.2	1	0.154	FALSE	189	492	56	216	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ATP8	6	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	9032	5	0	0.62	0.0544	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	0	0.62	0.0725	FALSE	230	198	14	283	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ND4L	3	14	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	25	0	0.4	1	0.0272	0.1268	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A673_BONE	0.4	1	0.154	FALSE	344	826	44	306	0	FALSE	ACH-000052
A673_BONE	MT-ND6--MT-TE	3	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0.1268	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A673_BONE	1	1	0.154	FALSE	499	1288	110	792	0	FALSE	ACH-000052
A673_BONE	AC005562.1--SP2	2	17	AC005562.1	9444	chr17:28942998:+	SP2	20548	chr17:45992678:+	ONLY_REF_SPLICE	YES	28	1	0.4	0.95	0.0181	0.154	AC005562.1->chr17:28903482-28999807:+,SP2->Sp2_transcription_factor,chr17:45973516-46006323:+	A673_BONE	0.4	0.95	0.1721	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	MT-ND4--MT-ND4L	3	13	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	0	0.84	1	0.0272	0.1178	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A673_BONE	0.84	1	0.145	FALSE	344	821	44	306	0	FALSE	ACH-000052
A673_BONE	PROSC--CHMP1A	6	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	207	207	0.03	0.03	0.0544	0.0091	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	A673_BONE	0.03	0.03	0.0635	TRUE	13	55	3	29	0	FALSE	ACH-000052
A673_BONE	RP11-96H19.1--RP11-446N19.1	6	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0544	0.0091	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A673_BONE	1	1	0.0635	FALSE	407	2205	196	549	0	FALSE	ACH-000052
A673_BONE	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A673_BONE	1	1	0.0544	FALSE	13	9	0	364	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO1	5	4	MT-ATP6	1516	chrM:9042:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	NO	4231	20316	0	0	0.0453	0.0362	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A673_BONE	0	0	0.0815	FALSE	183	104	9	328	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO2	5	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	55	8	0.14	0.53	0.0453	0.0362	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A673_BONE	0.14	0.53	0.0815	FALSE	59	21	0	114	0	FALSE	ACH-000052
A673_BONE	PTMA--PTMS	4	8	PTMA	6551	chr2:232577184:+	PTMS	13767	chr12:6879132:+	INCL_NON_REF_SPLICE	NO	2933	606	0	0.02	0.0362	0.0725	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	A673_BONE	0	0.02	0.1087	FALSE	0	0	0	16	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO1	5	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	8500	0	0	1	0.0453	0.0272	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A673_BONE	0	1	0.0725	FALSE	182	97	9	327	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO2	5	3	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	33	8	0.2	0.5	0.0453	0.0272	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A673_BONE	0.2	0.5	0.0725	FALSE	59	21	0	114	0	FALSE	ACH-000052
A673_BONE	MT-CO3--MT-ATP6	3	10	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0272	0.0906	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	A673_BONE	0.93	1	0.1178	FALSE	189	492	56	216	0	FALSE	ACH-000052
A673_BONE	PTMA--PTMS	4	6	PTMA	6060	chr2:232576693:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	3790	536	0	0.02	0.0362	0.0544	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	A673_BONE	0	0.02	0.0906	FALSE	0	0	0	16	0	FALSE	ACH-000052
A673_BONE	AC123023.1--AC018359.1	5	1	AC123023.1	1065	chr3:34244800:+	AC018359.1	11639	chr3:34428383:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0453	0.0091	NEIGHBORS_OVERLAP:+:+:[65567],AC123023.1->chr3:34244736-34310303:+,AC018359.1->chr3:34200826-34604369:+	A673_BONE	0.86	1	0.0544	FALSE	0	1	1	2	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO1	5	1	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	7910	0	0	1	0.0453	0.0091	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A673_BONE	0	1	0.0544	FALSE	182	97	9	327	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO1	5	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	8440	18456	0	0	0.0453	0.0091	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A673_BONE	0	0	0.0544	FALSE	183	104	9	328	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO1	5	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7594	20051	0	0	0.0453	0.0091	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A673_BONE	0	0	0.0544	FALSE	183	104	9	328	0	FALSE	ACH-000052
A673_BONE	NPM1P24--SET	5	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	25	1357	0.19	0	0.0453	0.0091	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	A673_BONE	0	0.19	0.0544	FALSE	0	0	0	434	0	FALSE	ACH-000052
A673_BONE	PTMA--PTMS	4	5	PTMA	6541	chr2:232577174:+	PTMS	13956	chr12:6879321:+	INCL_NON_REF_SPLICE	YES	3056	688	0	0.01	0.0362	0.0453	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	A673_BONE	0	0.01	0.0815	FALSE	0	0	0	16	0	FALSE	ACH-000052
A673_BONE	RP11-96H19.1--RP11-446N19.1	5	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0453	0.0091	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A673_BONE	1	1	0.0544	FALSE	467	2173	244	435	0	FALSE	ACH-000052
A673_BONE	PTMA--PTMS	5	0	PTMA	6054	chr2:232576687:+	PTMS	13976	chr12:6879341:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	A673_BONE	1	1	0.0453	TRUE	0	0	0	16	0	TRUE	ACH-000052
A673_BONE	PTMA--PTMS	3	8	PTMA	6551	chr2:232577184:+	PTMS	13746	chr12:6879111:+	INCL_NON_REF_SPLICE	NO	2933	532	0	0.02	0.0272	0.0725	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	A673_BONE	0	0.02	0.0997	FALSE	0	0	0	16	0	FALSE	ACH-000052
A673_BONE	FGF14-IT1--FGF14	4	3	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	9	1	0.44	0.0362	0.0272	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	A673_BONE	0.44	1	0.0634	TRUE	71	201	23	28	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO1	4	3	MT-ATP6	1444	chrM:8970:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	7793	18032	0	0	0.0362	0.0272	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A673_BONE	0	0	0.0634	FALSE	183	104	9	328	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ATP8	4	3	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9800	54	0	0.11	0.0362	0.0272	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	0	0.11	0.0634	FALSE	231	217	16	283	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ATP8	4	2	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	11361	0	0	1	0.0362	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	0	1	0.0543	FALSE	231	217	16	283	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ATP8	4	2	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11910	54	0	0.1	0.0362	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	0	0.1	0.0543	FALSE	231	217	16	283	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ND4L	4	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0.0181	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A673_BONE	1	1	0.0543	FALSE	344	821	44	306	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	7442	18422	0	0	0.0362	0.0091	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A673_BONE	0	0	0.0453	FALSE	183	104	9	328	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1070	chrM:8596:+	MT-CO1	5268	chrM:6490:+	INCL_NON_REF_SPLICE	YES	6017	17208	0	0	0.0362	0.0091	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A673_BONE	0	0	0.0453	FALSE	183	104	9	328	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ATP8	3	5	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1050	0	0.01	1	0.0272	0.0453	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	0.01	1	0.0725	FALSE	216	209	16	281	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ATP8	4	1	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	10260	754	0	0.01	0.0362	0.0091	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	0	0.01	0.0453	FALSE	231	217	16	283	0	FALSE	ACH-000052
A673_BONE	RP11-444D3.1--SOX5	3	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0272	0.0453	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	A673_BONE	0.89	1	0.0725	TRUE	274	363	69	150	0	FALSE	ACH-000052
A673_BONE	SAMD5--SASH1	4	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	2	11	0.71	0.31	0.0362	0.0091	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	A673_BONE	0.31	0.71	0.0453	TRUE	53	396	64	110	0	FALSE	ACH-000052
A673_BONE	GPI--UBB	4	0	GPI	6789	chr19:34868440:+	UBB	24216	chr17:16285477:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase,UBB->chr17:16284112-16286059:+,ubiquitin_B	A673_BONE	1	1	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	ITM2C--MT-CO1	4	0	ITM2C	5714	chr2:231741622:+	MT-CO1	11698	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	ITM2C->chr2:231729354-231743963:+,integral_membrane_protein_2C,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A673_BONE	1	1	0.0362	FALSE	0	0	0	6	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1555	chrM:9081:+	MT-CO1	5956	chrM:7178:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A673_BONE	1	1	0.0362	FALSE	183	104	9	328	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO1	3	4	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2397	20316	0	0	0.0272	0.0362	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A673_BONE	0	0	0.0634	FALSE	183	104	9	328	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO2	4	0	MT-ATP6	1072	chrM:8598:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A673_BONE	1	1	0.0362	FALSE	59	21	0	114	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ATP8	3	4	MT-ND4	2214	chrM:11973:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	3719	0	0	1	0.0272	0.0362	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	0	1	0.0634	FALSE	222	211	16	282	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A673_BONE	1	1	0.0362	FALSE	344	821	44	306	0	FALSE	ACH-000052
A673_BONE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A673_BONE	1	1	0.0362	FALSE	462	80	0	856	0	FALSE	ACH-000052
A673_BONE	SLC1A5--MT-ND4L	4	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A673_BONE	1	1	0.0362	FALSE	0	0	0	189	0	FALSE	ACH-000052
A673_BONE	SNHG3--GNAS	4	0	SNHG3	3181	chr1:28834672:+	GNAS	24750	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	A673_BONE	1	1	0.0362	TRUE	0	0	0	2	0	TRUE	ACH-000052
A673_BONE	MT-ATP6--MT-CO2	3	3	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	NO	26	9	0.19	0.4	0.0272	0.0272	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A673_BONE	0.19	0.4	0.0544	FALSE	59	21	0	114	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO2	3	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	29	9	0.17	0.4	0.0272	0.0272	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	A673_BONE	0.17	0.4	0.0544	FALSE	59	21	0	114	0	FALSE	ACH-000052
A673_BONE	MT-ND6--MT-TE	3	3	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0272	0.0272	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A673_BONE	0.75	1	0.0544	FALSE	499	1288	110	792	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ATP8	3	2	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	11446	0	0	1	0.0272	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	0	1	0.0453	FALSE	231	217	16	283	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ATP8	3	2	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	8938	5	0	0.5	0.0272	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	0	0.5	0.0453	FALSE	230	193	14	283	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ATP8	3	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9097	54	0	0.08	0.0272	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	0	0.08	0.0453	FALSE	230	198	14	283	0	FALSE	ACH-000052
A673_BONE	AC005562.1--SP2	3	1	AC005562.1	8359	chr17:28937960:+	SP2	23367	chr17:46000328:+	ONLY_REF_SPLICE	YES	24	47	0.14	0.08	0.0272	0.0091	AC005562.1->chr17:28903482-28999807:+,SP2->Sp2_transcription_factor,chr17:45973516-46006323:+	A673_BONE	0.08	0.14	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	CENPK--CHMP1A	3	1	CENPK	14117	chr5:64817302:-	CHMP1A	23763	chr16:89713739:-	ONLY_REF_SPLICE	YES	93	207	0.04	0.02	0.0272	0.0091	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Cells_-_Transformed_fibroblasts=1},{Klijn_CCL:Skin=1},CENPK->centromere_protein_K,chr5:64813593-64858998:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	A673_BONE	0.02	0.04	0.0363	TRUE	1	1	0	3	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1072	chrM:8598:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	6648	20316	0	0	0.0272	0.0091	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A673_BONE	0	0	0.0363	FALSE	183	104	9	328	0	FALSE	ACH-000052
A673_BONE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	8116	18560	0	0	0.0272	0.0091	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A673_BONE	0	0	0.0363	FALSE	183	104	9	328	0	FALSE	ACH-000052
A673_BONE	MT-ND4--MT-ATP8	3	1	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	NO	9200	486	0	0.01	0.0272	0.0091	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	0	0.01	0.0363	FALSE	231	204	14	283	0	FALSE	ACH-000052
A673_BONE	NPM1P24--SET	3	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	25	1450	0.14	0	0.0272	0.0091	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	A673_BONE	0	0.14	0.0363	FALSE	0	0	0	434	0	FALSE	ACH-000052
A673_BONE	PTMA--PTMS	3	1	PTMA	6060	chr2:232576693:+	PTMS	13973	chr12:6879338:+	INCL_NON_REF_SPLICE	YES	3790	443	0	0.01	0.0272	0.0091	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	A673_BONE	0	0.01	0.0363	FALSE	0	0	0	16	0	FALSE	ACH-000052
A673_BONE	FGF14-IT1--FGF14	2	4	FGF14-IT1	3717	chr13:103018795:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	9	1	0.4	0.0181	0.0362	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	A673_BONE	0.4	1	0.0543	TRUE	80	58	2	10	0	FALSE	ACH-000052
A673_BONE	MT-ND3--MT-ATP8	3	0	MT-ND3	1154	chrM:10212:+	MT-ATP8	4468	chrM:8487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	1	1	0.0272	FALSE	351	233	23	137	0	FALSE	ACH-000052
A673_BONE	MT-ND3--MT-ATP8	3	0	MT-ND3	1094	chrM:10152:+	MT-ATP8	4474	chrM:8493:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A673_BONE	1	1	0.0272	FALSE	351	233	23	137	0	FALSE	ACH-000052
A673_BONE	PTMA--PTMS	3	0	PTMA	6060	chr2:232576693:+	PTMS	13988	chr12:6879353:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	A673_BONE	1	1	0.0272	TRUE	0	0	0	16	0	TRUE	ACH-000052
A673_BONE	RP11-120D5.1--MID1	3	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	A673_BONE	1	1	0.0272	FALSE	16	356	14	466	0	FALSE	ACH-000052
A673_BONE	RP11-319G9.5--WWOX	3	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	A673_BONE	1	1	0.0272	FALSE	154	425	28	76	0	FALSE	ACH-000052
A673_BONE	RP11-444D3.1--SOX5	1	8	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	1	1	0.9	0.0091	0.0725	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	A673_BONE	0.9	1	0.0816	TRUE	160	277	29	98	0	FALSE	ACH-000052
A673_BONE	RP11-680G10.1--GSE1	2	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	35	1	0.12	0.0181	0.0272	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A673_BONE	0.12	1	0.0453	TRUE	64	13	3	59	0	FALSE	ACH-000052
A673_BONE	VTI1A--RP11-57H14.3	2	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	22	0	0.15	1	0.0181	0.0181	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	A673_BONE	0.15	1	0.0362	FALSE	272	151	14	158	0	FALSE	ACH-000052
A673_BONE	AC123023.1--AC018359.1	2	1	AC123023.1	1065	chr3:34244800:+	AC018359.1	10384	chr3:34402297:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0.0091	NEIGHBORS_OVERLAP:+:+:[65567],AC123023.1->chr3:34244736-34310303:+,AC018359.1->chr3:34200826-34604369:+	A673_BONE	1	1	0.0272	FALSE	0	0	1	1	0	FALSE	ACH-000052
A673_BONE	CYP7B1--RP11-32K4.1	1	5	CYP7B1	1296	chr8:65711023:-	RP11-32K4.1	23208	chr8:64641566:-	ONLY_REF_SPLICE	YES	17	0	0.26	1	0.0091	0.0453	CYP7B1->Oncogene{Bushman},chr8:65500320-65711318:-,cytochrome_P450_family_7_subfamily_B_member_1,RP11-32K4.1->chr8:64599737-65281115:-	A673_BONE	0.26	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	LINC00221--SPG7	2	1	LINC00221	8624	chr14:106962380:+	SPG7	26995	chr16:89597091:+	ONLY_REF_SPLICE	YES	0	60	1	0.05	0.0181	0.0091	LINC00221->chr14:106938445-106977000:+,long_intergenic_non-protein_coding_RNA_221,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	A673_BONE	0.05	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	PTMA--PTMS	1	5	PTMA	6060	chr2:232576693:+	PTMS	13958	chr12:6879323:+	ONLY_REF_SPLICE	NO	3790	618	0	0.01	0.0091	0.0453	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	A673_BONE	0	0.01	0.0544	FALSE	0	0	0	16	0	FALSE	ACH-000052
A673_BONE	RP13-16H11.2--CHMP1A	2	1	RP13-16H11.2	2132	chr10:26957336:-	CHMP1A	11097	chr16:89713739:-	ONLY_REF_SPLICE	YES	164	207	0.02	0.01	0.0181	0.0091	RP13-16H11.2->chr10:26953135-26965088:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	A673_BONE	0.01	0.02	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000052
A673_BONE	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	A673_BONE	1	1	0.0181	TRUE	0	9	0	44	1	FALSE	ACH-000052
A673_BONE	HMGA2--CAND1	2	0	HMGA2	5315	chr12:66232349:+	CAND1	29660	chr12:67675690:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,CAND1->chr12:67663061-67713731:+,cullin_associated_and_neddylation_dissociated_1	A673_BONE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	KAT6B--TSPAN14	2	0	KAT6B	5638	chr10:76603236:+	TSPAN14	37709	chr10:82248973:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	KAT6B->Oncogene{Bushman},chr10:76585340-76792380:+,lysine_acetyltransferase_6B,TSPAN14->chr10:82213922-82292879:+,tetraspanin_14	A673_BONE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	LIPI--ABCA13	2	0	LIPI	1046	chr21:15583121:-	ABCA13	91658	chr7:48654881:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LIPI->chr21:15481134-15583166:-,lipase_I,ABCA13->ATP_binding_cassette_subfamily_A_member_13,chr7:48211055-48687092:+	A673_BONE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A673_BONE	1	1	0.0181	FALSE	292	1546	117	613	0	FALSE	ACH-000052
A673_BONE	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	A673_BONE	1	1	0.0181	FALSE	0	23	1	67	0	FALSE	ACH-000052
A673_BONE	RTCB--ATRX	2	0	RTCB	2851	chr22:32804162:-	ATRX	55744	chrX:76776394:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	RTCB->RNA_2',3'-cyclic_phosphate_and_5'-OH_ligase,chr22:32783569-32808242:-,ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-	A673_BONE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000052
A673_BONE	AC123023.1--AC018359.1	1	1	AC123023.1	1065	chr3:34244800:+	AC018359.1	9850	chr3:34401763:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0091	0.0091	NEIGHBORS_OVERLAP:+:+:[65567],AC123023.1->chr3:34244736-34310303:+,AC018359.1->chr3:34200826-34604369:+	A673_BONE	1	1	0.0182	FALSE	0	0	1	1	0	FALSE	ACH-000052
A673_BONE	AC123023.1--AC018359.1	1	1	AC123023.1	1065	chr3:34244800:+	AC018359.1	8782	chr3:34387714:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0091	0.0091	NEIGHBORS_OVERLAP:+:+:[65567],AC123023.1->chr3:34244736-34310303:+,AC018359.1->chr3:34200826-34604369:+	A673_BONE	1	1	0.0182	FALSE	0	1	0	3	0	FALSE	ACH-000052
A673_BONE	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0091	0.0091	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A673_BONE	0.25	1	0.0182	FALSE	125	705	46	456	0	FALSE	ACH-000052
A673_BONE	PCDH7--ZSWIM6	1	1	PCDH7	8615	chr4:30921991:+	ZSWIM6	24603	chr5:60817090:+	ONLY_REF_SPLICE	YES	108	81	0.02	0.02	0.0091	0.0091	{Klijn_CCL:Sarcomatoid=1},PCDH7->chr4:30722037-31148422:+,protocadherin_7,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	A673_BONE	0.02	0.02	0.0182	TRUE	0	0	0	1	0	FALSE	ACH-000052
A673_BONE	RP11-838N2.5--MYL12B	1	1	RP11-838N2.5	1115	chr18:3284257:+	MYL12B	8095	chr18:3272882:+	ONLY_REF_SPLICE	YES	38	216	0.05	0.01	0.0091	0.0091	LOCAL_REARRANGEMENT:+:[5861],RP11-838N2.5->chr18:3284143-3327290:+,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	A673_BONE	0.01	0.05	0.0182	FALSE	0	0	0	3	0	FALSE	ACH-000052
A673_BONE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0091	0.0091	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A673_BONE	1	1	0.0182	FALSE	275	511	55	178	0	FALSE	ACH-000052
A673_BONE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	24436	chr10:114650725:+	ONLY_REF_SPLICE	YES	22	0	0.08	1	0.0091	0.0091	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	A673_BONE	0.08	1	0.0182	FALSE	21	3	0	16	0	FALSE	ACH-000052
SNU81_LARGE_INTESTINE	OR51S1--TP53I11	7	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1318	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU81_LARGE_INTESTINE	1	1	0.1318	TRUE	402	216	10	229	0	FALSE	ACH-000991
SNU81_LARGE_INTESTINE	TIMM23B--PARGP1	5	3	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0942	0.0565	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	SNU81_LARGE_INTESTINE	1	1	0.1507	TRUE	393	2105	140	19	0	FALSE	ACH-000991
SNU81_LARGE_INTESTINE	RPL10--THRA	4	0	RPL10	4459	chrX:153627935:+	THRA	29717	chr17:38249638:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0753	0	RPL10->Oncogene{Bushman},chrX:153618315-153637504:+,ribosomal_protein_L10,THRA->Oncogene{Bushman},chr17:38214543-38250120:+,thyroid_hormone_receptor,_alpha	SNU81_LARGE_INTESTINE	1	1	0.0753	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	BDP1--H2AFV	3	0	BDP1	7182	chr5:70763314:+	H2AFV	55984	chr7:44874161:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0565	0	BDP1->B_double_prime_1,_subunit_of_RNA_polymerase_III_transcription_initiation_factor_IIIB,chr5:70751442-70863649:+,H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	CD82--ERBB2	3	0	CD82	15463	chr11:44640742:+	ERBB2	43637	chr17:37884153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	HGNC_GENEFAM,CD82->CD82_molecule,Oncogene{Bushman},chr11:44585977-44641913:+,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	CUL9--TPD52L2	3	0	CUL9	24876	chr6:43189748:+	TPD52L2	31706	chr20:62500759:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	CUL9->chr6:43149913-43192325:+,cullin_9,TPD52L2->chr20:62496596-62522898:+,tumor_protein_D52_like_2	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	FUCA2--CASZ1	3	0	FUCA2	1185	chr6:143832643:-	CASZ1	21405	chr1:10719899:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	FUCA2->chr6:143815948-143832827:-,fucosidase,_alpha-L-_2,_plasma,CASZ1->castor_zinc_finger_1,chr1:10696661-10856707:-	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	GSTP1--SUGT1	3	0	GSTP1	1928	chr11:67351993:+	SUGT1	7227	chr13:53227004:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1,SUGT1->SGT1_homolog,_MIS12_kinetochore_complex_assembly_cochaperone,chr13:53226844-53275044:+	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	LENG8--MSTO1	3	0	LENG8	10294	chr19:54969902:+	MSTO1	18120	chr1:155581489:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	LENG8->chr19:54960065-54973217:+,leukocyte_receptor_cluster_(LRC)_member_8,MSTO1->chr1:155579979-155718153:+,misato_1,_mitochondrial_distribution_and_morphology_regulator	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	LENG8--MSTO1	3	0	LENG8	10294	chr19:54969902:+	MSTO1	22872	chr1:155717069:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	LENG8->chr19:54960065-54973217:+,leukocyte_receptor_cluster_(LRC)_member_8,MSTO1->chr1:155579979-155718153:+,misato_1,_mitochondrial_distribution_and_morphology_regulator	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	LMO7--CLTA	3	0	LMO7	35970	chr13:76417052:+	CLTA	49839	chr9:36197548:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0565	0	LMO7->LIM_domain_7,Oncogene{Bushman},chr13:76194570-76434004:+,CLTA->chr9:36190853-36304778:+,clathrin_light_chain_A	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU81_LARGE_INTESTINE	1	1	0.0565	FALSE	183	104	9	328	0	FALSE	ACH-000991
SNU81_LARGE_INTESTINE	NEAT1--NAGK	3	0	NEAT1	1605	chr11:65190849:+	NAGK	36480	chr2:71302787:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding),NAGK->N-acetylglucosamine_kinase,chr2:71291474-71306935:+	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	RAB1B--RNF38	3	0	RAB1B	4790	chr11:66044239:+	RNF38	20016	chr9:36353236:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	RAB1B->RAB1B,_member_RAS_oncogene_family,chr11:66036004-66044963:+,RNF38->chr9:36336393-36487545:-,ring_finger_protein_38	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	SH3BP2--MTHFD2	3	0	SH3BP2	26310	chr4:2838870:+	MTHFD2	43913	chr2:74443974:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	SH3BP2->Oncogene{Bushman},SH3_domain_binding_protein_2,chr4:2794750-2842825:+,MTHFD2->chr2:74425689-74444692:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_2,_methenyltetrahydrofolate_cyclohydrolase	SNU81_LARGE_INTESTINE	1	1	0.0565	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	SRRM2--MT-CO1	3	0	SRRM2	16160	chr16:2819177:+	MT-CO1	22976	chrM:6357:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	SRRM2->chr16:2802330-2822539:+,serine/arginine_repetitive_matrix_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU81_LARGE_INTESTINE	1	1	0.0565	FALSE	0	0	0	1	0	FALSE	ACH-000991
SNU81_LARGE_INTESTINE	DHX36--ARID2	2	0	DHX36	15916	chr3:154011537:-	ARID2	42876	chr12:46231104:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	DHX36->DEAH-box_helicase_36,chr3:153990335-154042286:-,ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	FRS2--CORO1C	2	0	FRS2	1182	chr12:69864310:+	CORO1C	27912	chr12:109095099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	MLTK--RAPGEF4	2	0	MLTK	5626	chr2:174034620:+	RAPGEF4	51193	chr2:173825488:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	LOCAL_REARRANGEMENT:+:[22542],MLTK->chr2:173940163-174132738:+,RAPGEF4->Rap_guanine_nucleotide_exchange_factor_4,chr2:173600002-173917621:+	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	NUP160--OCLN	2	0	NUP160	23053	chr11:47819331:-	OCLN	38476	chr5:68800004:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	NUP160->chr11:47799639-47870107:-,nucleoporin_160kDa,OCLN->chr5:68788119-68853931:+,occludin	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	RBM26--SNX1	2	0	RBM26	1774	chr13:79979839:-	SNX1	34579	chr15:64404772:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	RBM26->RNA_binding_motif_protein_26,chr13:79885962-79980612:-,SNX1->chr15:64386322-64438289:+,sorting_nexin_1	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	RCC1--HSPD1	2	0	RCC1	2175	chr1:28834672:+	HSPD1	26108	chr2:198358216:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,HSPD1->Oncogene{Bushman},chr2:198351305-198381461:-,heat_shock_protein_family_D_(Hsp60)_member_1	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	RPL10A--SLC22A18	2	0	RPL10A	1620	chr6:35436804:+	SLC22A18	18304	chr11:2943332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	RPL10A->chr6:35436185-35438562:+,ribosomal_protein_L10a,SLC22A18->Oncogene{Bushman},chr11:2920951-2946476:+,solute_carrier_family_22_member_18	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	SEL1L--ZC3H14	2	0	SEL1L	6630	chr14:81969065:-	ZC3H14	36347	chr14:89041037:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	GTEx&tcga_normals:1/3694=0.03%,SEL1L->Oncogene{Bushman},SEL1L_ERAD_E3_ligase_adaptor_subunit,chr14:81937893-82000205:-,ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	TMEM67--KNSTRN	2	0	TMEM67	33371	chr8:94828743:+	KNSTRN	44490	chr15:40681707:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	TMEM67->chr8:94767072-94831462:+,transmembrane_protein_67,KNSTRN->chr15:40674922-40686447:+,kinetochore-localized_astrin/SPAG5_binding_protein	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
SNU81_LARGE_INTESTINE	TNFRSF10B--WDR11	2	0	TNFRSF10B	5034	chr8:22888272:-	WDR11	32809	chr10:122640338:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0	TNFRSF10B->chr8:22877646-22926692:-,tumor_necrosis_factor_receptor_superfamily_member_10b,WDR11->Oncogene{Bushman},WD_repeat_domain_11,chr10:122610687-122669036:+	SNU81_LARGE_INTESTINE	1	1	0.0377	TRUE	0	0	0	1	0	TRUE	ACH-000991
ONS76_CENTRAL_NERVOUS_SYSTEM	GNA11--CCDC94	133	86	GNA11	1378	chr19:3094785:+	CCDC94	24223	chr19:4268581:+	ONLY_REF_SPLICE	YES	38	29	0.85	0.88	1.694	1.0953	GNA11->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_11,Oncogene{Bushman},OncomapV4_panel,chr19:3094408-3124002:+,CCDC94->chr19:4247076-4269087:+,coiled-coil_domain_containing_94	ONS76_CENTRAL_NERVOUS_SYSTEM	0.85	0.88	2.7893	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	ZC3H15--SLC39A10	97	59	ZC3H15	3333	chr2:187360061:+	SLC39A10	17603	chr2:196470860:+	ONLY_REF_SPLICE	YES	62	0	0.72	1	1.2354	0.7515	ZC3H15->chr2:187350883-187374090:+,zinc_finger_CCCH-type_containing_15,SLC39A10->chr2:196440701-196602426:+,solute_carrier_family_39_member_10	ONS76_CENTRAL_NERVOUS_SYSTEM	0.72	1	1.9869	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	RAB11B--TMOD3	104	1	RAB11B	1476	chr19:8455340:+	TMOD3	32881	chr15:52226447:+	ONLY_REF_SPLICE	YES	13	1	0.89	0.99	1.3246	0.0127	RAB11B->RAB11B,_member_RAS_oncogene_family,chr19:8454865-8469318:+,TMOD3->chr15:52121825-52239492:+,tropomodulin_3	ONS76_CENTRAL_NERVOUS_SYSTEM	0.89	0.99	1.3373	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MAPK6--FBN1	82	21	MAPK6	3577	chr15:52311573:+	FBN1	21726	chr15:48937147:-	ONLY_REF_SPLICE	YES	40	4	0.72	0.96	1.0444	0.2675	MAPK6->Oncogene{Bushman},chr15:52244303-52358462:+,mitogen-activated_protein_kinase_6,FBN1->chr15:48700503-48938046:-,fibrillin_1	ONS76_CENTRAL_NERVOUS_SYSTEM	0.72	0.96	1.3119	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	77	4	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	18350	1525	0	0.05	0.9807	0.0509	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0.05	1.0316	FALSE	231	217	16	283	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	73	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9298	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.9298	FALSE	369	2501	205	193	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	57	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.726	0.242	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ONS76_CENTRAL_NERVOUS_SYSTEM	0.99	1	0.968	TRUE	508	994	45	981	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	IMMP2L--DOCK4	49	10	IMMP2L	1667	chr7:111201907:-	DOCK4	73934	chr7:111372343:-	ONLY_REF_SPLICE	YES	16	33	0.79	0.64	0.6241	0.1274	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	ONS76_CENTRAL_NERVOUS_SYSTEM	0.64	0.79	0.7515	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	48	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6114	0.0509	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.6623	FALSE	462	80	0	856	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	ZNF77--AC011526.1	44	6	ZNF77	1134	chr19:2944836:-	AC011526.1	15106	chr19:41962392:-	ONLY_REF_SPLICE	YES	0	11	1	0.82	0.5604	0.0764	ZNF77->chr19:2933216-2944969:-,zinc_finger_protein_77,AC011526.1->chr19:41960074-42006559:-	ONS76_CENTRAL_NERVOUS_SYSTEM	0.82	1	0.6368	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	34	19	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.433	0.242	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.675	TRUE	0	5	0	45	5	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MAPK6--FBN1	35	15	MAPK6	3577	chr15:52311573:+	FBN1	26688	chr15:48905289:-	ONLY_REF_SPLICE	YES	40	41	0.56	0.55	0.4458	0.191	MAPK6->Oncogene{Bushman},chr15:52244303-52358462:+,mitogen-activated_protein_kinase_6,FBN1->chr15:48700503-48938046:-,fibrillin_1	ONS76_CENTRAL_NERVOUS_SYSTEM	0.55	0.56	0.6368	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	32	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	132	5	0.2	0.87	0.4076	0.0127	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ONS76_CENTRAL_NERVOUS_SYSTEM	0.2	0.87	0.4203	TRUE	519	3926	326	965	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	13	69	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1656	0.8788	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	1.0444	FALSE	369	2501	205	193	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	PEX11G--NRL	29	0	PEX11G	3750	chr19:7553837:-	NRL	16382	chr14:24553954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3694	0	PEX11G->chr19:7541761-7562335:-,peroxisomal_biogenesis_factor_11_gamma,NRL->chr14:24549316-24584223:-,neural_retina_leucine_zipper	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.3694	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	28	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	47	4	0.4	0.89	0.3566	0.0382	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ONS76_CENTRAL_NERVOUS_SYSTEM	0.4	0.89	0.3948	FALSE	59	21	0	114	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	26	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.3312	0.0637	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ONS76_CENTRAL_NERVOUS_SYSTEM	0.97	1	0.3949	FALSE	499	1288	110	792	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	13	53	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1656	0.675	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.8406	FALSE	369	2501	205	193	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	25	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	14624	5	0	0.84	0.3184	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0.84	0.3311	FALSE	230	193	14	283	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	RPAP2--MTF2	23	9	RPAP2	11085	chr1:92801984:+	MTF2	34703	chr1:93575787:+	ONLY_REF_SPLICE	YES	14	35	0.7	0.48	0.2929	0.1146	RPAP2->RNA_polymerase_II_associated_protein_2,chr1:92764522-92867613:+,MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2	ONS76_CENTRAL_NERVOUS_SYSTEM	0.48	0.7	0.4075	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	13	41	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1656	0.5222	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.6878	FALSE	369	2501	205	193	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	21	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2675	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.2675	FALSE	369	2501	205	193	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	SUFU--TMEM180	19	3	SUFU	2483	chr10:104269060:+	TMEM180	25288	chr10:104228712:+	ONLY_REF_SPLICE	YES	11	16	0.67	0.58	0.242	0.0382	LOCAL_REARRANGEMENT:+:[26942],SUFU->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SUFU_negative_regulator_of_hedgehog_signaling,chr10:104263744-104393292:+,TMEM180->chr10:104221149-104236802:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.58	0.67	0.2802	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	ZNF77--AC011526.1	15	7	ZNF77	1134	chr19:2944836:-	AC011526.1	14670	chr19:41962828:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.191	0.0892	ZNF77->chr19:2933216-2944969:-,zinc_finger_protein_77,AC011526.1->chr19:41960074-42006559:-	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.2802	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	16	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2038	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.2038	FALSE	13	9	0	364	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	10	23	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.1274	0.2929	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.4203	FALSE	369	2501	205	193	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	14	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1783	0.0637	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ONS76_CENTRAL_NERVOUS_SYSTEM	0.95	1	0.242	FALSE	499	1288	110	792	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	9	18	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.1146	0.2293	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ONS76_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.3439	FALSE	499	1288	110	792	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	13	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	11453	31549	0	0	0.1656	0.0127	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0	0.1783	FALSE	183	104	9	328	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	13	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14628	8	0	0.64	0.1656	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0.64	0.1783	FALSE	230	198	14	283	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	6	27	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0764	0.3439	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ONS76_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.4203	FALSE	499	1288	110	792	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	7	21	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0892	0.2675	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.3567	FALSE	369	2501	205	193	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	11	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1401	0.0255	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.1656	FALSE	515	4851	409	746	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	ZC3H15--SLC39A10	5	25	ZC3H15	3333	chr2:187360061:+	SLC39A10	22606	chr2:196544756:+	ONLY_REF_SPLICE	YES	62	30	0.33	0.5	0.0637	0.3184	ZC3H15->chr2:187350883-187374090:+,zinc_finger_CCCH-type_containing_15,SLC39A10->chr2:196440701-196602426:+,solute_carrier_family_39_member_10	ONS76_CENTRAL_NERVOUS_SYSTEM	0.33	0.5	0.3821	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-CO1--MT-RNR2	9	8	MT-CO1	1653	chrM:6556:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	32250	0	0	1	0.1146	0.1019	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ONS76_CENTRAL_NERVOUS_SYSTEM	0	1	0.2165	FALSE	44	51	6	21	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	9	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.7	0.1146	0.0637	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.7	1	0.1783	TRUE	458	1351	185	561	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	TRAP1--CREBBP	10	1	TRAP1	1177	chr16:3767422:-	CREBBP	49184	chr16:3799684:-	ONLY_REF_SPLICE	YES	15	10	0.42	0.52	0.1274	0.0127	LOCAL_REARRANGEMENT:-:[7457],TRAP1->Oncogene{Bushman},TNF_receptor_associated_protein_1,chr16:3701640-3767598:-,CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-	ONS76_CENTRAL_NERVOUS_SYSTEM	0.42	0.52	0.1401	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	CLPX--CCDC171	9	4	CLPX	1268	chr15:65477413:-	CCDC171	45732	chr9:15777598:+	ONLY_REF_SPLICE	YES	39	2	0.25	0.87	0.1146	0.0509	CLPX->caseinolytic_mitochondrial_matrix_peptidase_chaperone_subunit,chr15:65440557-65477680:-,CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171	ONS76_CENTRAL_NERVOUS_SYSTEM	0.25	0.87	0.1655	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	27	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0382	0.3439	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ONS76_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.3821	FALSE	499	1288	110	792	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	8	4	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	13067	29779	0	0	0.1019	0.0509	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0	0.1528	FALSE	183	104	9	328	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	8	4	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	49	3	0.2	0.8	0.1019	0.0509	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ONS76_CENTRAL_NERVOUS_SYSTEM	0.2	0.8	0.1528	FALSE	59	21	0	114	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	8	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	46	3	0.19	0.79	0.1019	0.0382	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ONS76_CENTRAL_NERVOUS_SYSTEM	0.19	0.79	0.1401	FALSE	59	21	0	114	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	8	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	25	1	0.31	0.1019	0.0382	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.1401	TRUE	465	1949	224	605	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	DENND4A--ANKDD1A	7	6	DENND4A	1284	chr15:66084348:-	ANKDD1A	42462	chr15:65207996:+	ONLY_REF_SPLICE	YES	5	0	0.72	1	0.0892	0.0764	DENND4A->DENN_domain_containing_4A,chr15:65950384-66084631:-,ANKDD1A->ankyrin_repeat_and_death_domain_containing_1A,chr15:65204101-65251042:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.72	1	0.1656	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	18	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0509	0.2293	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ONS76_CENTRAL_NERVOUS_SYSTEM	0.96	1	0.2802	FALSE	499	1288	110	792	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1019	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.1019	FALSE	13	9	0	364	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-CO1--MT-RNR2	7	4	MT-CO1	1536	chrM:6439:+	MT-RNR2	6107	chrM:2235:+	INCL_NON_REF_SPLICE	NO	29735	12333	0	0	0.0892	0.0509	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0	0.1401	FALSE	44	51	6	21	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	7	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0892	0.0509	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.1401	FALSE	462	80	0	856	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	19	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0382	0.242	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ONS76_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.2802	FALSE	499	1288	110	792	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND3--MT-ATP8	7	1	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	205	2	0.04	0.8	0.0892	0.0127	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0.04	0.8	0.1019	FALSE	351	233	23	137	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	7	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0892	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0892	FALSE	416	2512	207	587	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	TMEM132A--MT-ND4L	7	0	TMEM132A	12311	chr11:60703820:+	MT-ND4L	16124	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0892	0	TMEM132A->chr11:60691935-60704631:+,transmembrane_protein_132A,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0892	FALSE	0	0	0	3	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	DENND4A--ANKDD1A	6	2	DENND4A	1284	chr15:66084348:-	ANKDD1A	46952	chr15:65218265:+	ONLY_REF_SPLICE	YES	5	4	0.62	0.67	0.0764	0.0255	DENND4A->DENN_domain_containing_4A,chr15:65950384-66084631:-,ANKDD1A->ankyrin_repeat_and_death_domain_containing_1A,chr15:65204101-65251042:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.62	0.67	0.1019	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	6	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17211	8	0	0.5	0.0764	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0.5	0.1019	FALSE	231	205	14	283	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	IGFBP4--NPM1	6	1	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	1770	1	0	0.88	0.0764	0.0127	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0.88	0.0891	FALSE	0	0	0	38	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	6	1	MT-ATP6	1121	chrM:8647:+	MT-CO1	4698	chrM:5920:+	INCL_NON_REF_SPLICE	YES	11323	0	0	1	0.0764	0.0127	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ONS76_CENTRAL_NERVOUS_SYSTEM	0	1	0.0891	FALSE	182	97	9	327	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-CO1--MT-RNR2	3	13	MT-CO1	2223	chrM:7126:+	MT-RNR2	5598	chrM:1726:+	INCL_NON_REF_SPLICE	NO	23123	0	0	1	0.0382	0.1656	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ONS76_CENTRAL_NERVOUS_SYSTEM	0	1	0.2038	FALSE	44	51	6	21	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	4	8	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	12382	0	0	1	0.0509	0.1019	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ONS76_CENTRAL_NERVOUS_SYSTEM	0	1	0.1528	FALSE	182	97	9	327	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	12	MT-ATP6	1444	chrM:8970:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	12201	29051	0	0	0.0382	0.1528	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0	0.191	FALSE	183	104	9	328	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	4	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	20089	1	0	0.9	0.0637	0.0509	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0.9	0.1146	FALSE	231	217	16	283	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	6	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0764	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0764	FALSE	499	1288	110	792	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	CNTN5--CDH12	5	3	CNTN5	1318	chr11:98892000:+	CDH12	45814	chr5:22212752:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0637	0.0382	CNTN5->chr11:98891683-100229616:+,contactin_5,CDH12->cadherin_12,chr5:21750782-22853731:-	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.1019	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	DENND4A--ANKDD1A	5	3	DENND4A	1284	chr15:66084348:-	ANKDD1A	45853	chr15:65214120:+	ONLY_REF_SPLICE	YES	5	3	0.62	0.73	0.0637	0.0382	DENND4A->DENN_domain_containing_4A,chr15:65950384-66084631:-,ANKDD1A->ankyrin_repeat_and_death_domain_containing_1A,chr15:65204101-65251042:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.62	0.73	0.1019	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MAPK6--FBN1	2	15	MAPK6	7684	chr15:52320070:+	FBN1	26688	chr15:48905289:-	ONLY_REF_SPLICE	YES	49	41	0.26	0.29	0.0255	0.191	MAPK6->Oncogene{Bushman},chr15:52244303-52358462:+,mitogen-activated_protein_kinase_6,FBN1->chr15:48700503-48938046:-,fibrillin_1	ONS76_CENTRAL_NERVOUS_SYSTEM	0.26	0.29	0.2165	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	3	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20765	53	0	0.13	0.0637	0.0382	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0.13	0.1019	FALSE	231	217	16	283	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	5	2	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0637	0.0255	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0892	TRUE	0	3	0	38	3	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	CDKN2B-AS1--SOX13	5	2	CDKN2B-AS1	1384	chr9:21995160:+	SOX13	29172	chr1:204082043:+	ONLY_REF_SPLICE	YES	0	6	1	0.54	0.0637	0.0255	CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+,SOX13->SRY-box_13,chr1:204042243-204096863:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.54	1	0.0892	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	5	2	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	30	3	0.19	0.7	0.0637	0.0255	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ONS76_CENTRAL_NERVOUS_SYSTEM	0.19	0.7	0.0892	FALSE	59	21	0	114	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	6	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0509	0.0764	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.1273	FALSE	209	205	15	279	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	19156	1	0	0.88	0.0637	0.0255	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0.88	0.0892	FALSE	231	205	14	283	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	TRAP1--CREBBP	5	2	TRAP1	2246	chr16:3760386:-	CREBBP	49184	chr16:3799684:-	ONLY_REF_SPLICE	YES	65	10	0.1	0.41	0.0637	0.0255	LOCAL_REARRANGEMENT:-:[7457],TRAP1->Oncogene{Bushman},TNF_receptor_associated_protein_1,chr16:3701640-3767598:-,CREBBP->ArcherDX_panel,CREB_binding_protein,FoundationOne_panel,Oncogene{Bushman},chr16:3775055-3930727:-	ONS76_CENTRAL_NERVOUS_SYSTEM	0.1	0.41	0.0892	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	DENND4A--ANKDD1A	5	1	DENND4A	1284	chr15:66084348:-	ANKDD1A	48886	chr15:65223020:+	ONLY_REF_SPLICE	YES	5	8	0.55	0.43	0.0637	0.0127	DENND4A->DENN_domain_containing_4A,chr15:65950384-66084631:-,ANKDD1A->ankyrin_repeat_and_death_domain_containing_1A,chr15:65204101-65251042:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.43	0.55	0.0764	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	LDLR--BRK1	4	5	LDLR	7851	chr19:11216276:+	BRK1	28270	chr3:10167310:+	ONLY_REF_SPLICE	YES	315	468	0.03	0.02	0.0509	0.0637	{Klijn_CCL:Ovary=1},LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.1146	TRUE	0	0	0	2	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	5	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	11322	28863	0	0	0.0637	0.0127	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0	0.0764	FALSE	183	104	9	328	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17796	53	0	0.15	0.0509	0.0637	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0.15	0.1146	FALSE	231	217	16	283	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	5	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14670	53	0	0.1	0.0637	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0.1	0.0764	FALSE	230	198	14	283	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	EEF2--RPS28	5	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0637	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0637	TRUE	0	0	0	100	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TN	5	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0637	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0637	FALSE	369	2501	205	193	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	SUFU--TMEM180	4	4	SUFU	2483	chr10:104269060:+	TMEM180	23514	chr10:104225739:+	ONLY_REF_SPLICE	YES	11	0	0.42	1	0.0509	0.0509	LOCAL_REARRANGEMENT:+:[26942],SUFU->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SUFU_negative_regulator_of_hedgehog_signaling,chr10:104263744-104393292:+,TMEM180->chr10:104221149-104236802:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.42	1	0.1018	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	4	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	28	3	0.2	0.7	0.0509	0.0382	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ONS76_CENTRAL_NERVOUS_SYSTEM	0.2	0.7	0.0891	FALSE	59	21	0	114	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	4	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	47	3	0.13	0.7	0.0509	0.0382	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ONS76_CENTRAL_NERVOUS_SYSTEM	0.13	0.7	0.0891	FALSE	59	21	0	114	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-CO1--MT-RNR2	3	7	MT-CO1	1704	chrM:6607:+	MT-RNR2	6119	chrM:2247:+	INCL_NON_REF_SPLICE	YES	31072	11878	0	0	0.0382	0.0892	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0	0.1274	FALSE	44	51	6	21	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	4	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	11444	32072	0	0	0.0509	0.0255	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0	0.0764	FALSE	183	104	9	328	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	4	2	MT-ATP6	1146	chrM:8672:+	MT-CO2	4974	chrM:7878:+	INCL_NON_REF_SPLICE	YES	46	4	0.12	0.6	0.0509	0.0255	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ONS76_CENTRAL_NERVOUS_SYSTEM	0.12	0.6	0.0764	FALSE	59	21	0	114	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	6	MT-ND4	2214	chrM:11973:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	5823	0	0	1	0.0382	0.0764	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0	1	0.1146	FALSE	222	211	16	282	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	LDLR--BRK1	4	1	LDLR	5037	chr19:11213462:+	BRK1	28270	chr3:10167310:+	ONLY_REF_SPLICE	YES	390	468	0.01	0.01	0.0509	0.0127	{Klijn_CCL:Ovary=1},LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0636	FALSE	0	0	0	2	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	4	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	10953	29602	0	0	0.0509	0.0127	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0	0.0636	FALSE	183	104	9	328	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	4	1	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	14917	20381	0	0	0.0509	0.0127	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0	0.0636	FALSE	183	104	9	328	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11322	31981	0	0	0.0509	0.0127	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0	0.0636	FALSE	183	104	9	328	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14411	8	0	0.38	0.0509	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0.38	0.0636	FALSE	230	193	14	283	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	1	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	14592	0	0	1	0.0509	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0	1	0.0636	FALSE	230	197	14	283	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	5	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	NO	18061	1	0	0.89	0.0382	0.0637	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0.89	0.1019	FALSE	231	217	16	283	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0509	0.0127	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ONS76_CENTRAL_NERVOUS_SYSTEM	0.71	1	0.0636	FALSE	292	1546	117	613	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13842	31981	0	0	0.0382	0.0509	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0	0.0891	FALSE	183	104	9	328	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	4	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	47	3	0.13	0.7	0.0382	0.0509	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ONS76_CENTRAL_NERVOUS_SYSTEM	0.13	0.7	0.0891	FALSE	59	21	0	114	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	4	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	20765	0	0	1	0.0382	0.0509	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0	1	0.0891	FALSE	231	217	16	283	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	20035	0	0	1	0.0382	0.0509	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0	1	0.0891	FALSE	231	217	16	283	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	PEX11G--NRL	4	0	PEX11G	3353	chr19:7554234:-	NRL	16382	chr14:24553954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0509	0	PEX11G->chr19:7541761-7562335:-,peroxisomal_biogenesis_factor_11_gamma,NRL->chr14:24549316-24584223:-,neural_retina_leucine_zipper	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0509	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	URI1--ZNF536	3	4	URI1	19282	chr19:30503438:+	ZNF536	41024	chr19:31201664:+	ONLY_REF_SPLICE	YES	106	0	0.06	1	0.0382	0.0509	URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+,ZNF536->chr19:30719197-31204445:+,zinc_finger_protein_536	ONS76_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0891	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	28	3	0.18	0.67	0.0382	0.0382	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ONS76_CENTRAL_NERVOUS_SYSTEM	0.18	0.67	0.0764	FALSE	59	21	0	114	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	17796	1892	0	0	0.0382	0.0382	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0	0.0764	FALSE	231	217	16	283	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	3	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0.0382	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0764	TRUE	477	1352	189	275	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	2	MT-ATP6	1555	chrM:9081:+	MT-CO2	4955	chrM:7859:+	INCL_NON_REF_SPLICE	YES	4	4	0.56	0.56	0.0382	0.0255	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ONS76_CENTRAL_NERVOUS_SYSTEM	0.56	0.56	0.0637	FALSE	59	21	0	114	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO2	3	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	31	3	0.14	0.62	0.0382	0.0255	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	ONS76_CENTRAL_NERVOUS_SYSTEM	0.14	0.62	0.0637	FALSE	59	21	0	114	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0.0255	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0637	FALSE	467	2173	244	435	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11372	31981	0	0	0.0382	0.0127	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0	0.0509	FALSE	183	104	9	328	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	15774	1942	0	0	0.0382	0.0127	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0	0.0509	FALSE	231	204	14	283	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MIR205HG--RPS28	3	0	MIR205HG	4432	chr1:209605596:+	RPS28	8361	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0382	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0382	FALSE	499	1288	110	792	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0382	FALSE	499	1288	110	792	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0382	FALSE	462	80	0	856	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	PHLDA1--MT-ND5	3	0	PHLDA1	4269	chr12:76424444:-	MT-ND5	13540	chrM:13390:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	PHLDA1->chr12:76419227-76427712:-,pleckstrin_homology_like_domain_family_A_member_1,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0382	FALSE	0	0	0	3	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	PHLDA1--MT-ND5	3	0	PHLDA1	4204	chr12:76424509:-	MT-ND5	13202	chrM:13052:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	PHLDA1->chr12:76419227-76427712:-,pleckstrin_homology_like_domain_family_A_member_1,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0382	FALSE	0	0	0	3	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	SDC1--RPL18AP3	3	0	SDC1	6963	chr2:20402403:-	RPL18AP3	11879	chr12:104659126:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0	SDC1->Oncogene{Bushman},chr2:20400558-20425194:-,syndecan_1,RPL18AP3->chr12:104659056-104659669:+,ribosomal_protein_L18a_pseudogene_3	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0382	TRUE	0	0	0	2	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	XXyac-YX65C7_A.2--RNASET2	2	2	XXyac-YX65C7_A.2	2234	chr6:169614582:+	RNASET2	14448	chr6:167356577:-	ONLY_REF_SPLICE	YES	0	36	1	0.1	0.0255	0.0255	XXyac-YX65C7_A.2->chr6:169613349-169639660:+,RNASET2->Oncogene{Bushman},chr6:167342992-167370679:-,ribonuclease_T2	ONS76_CENTRAL_NERVOUS_SYSTEM	0.1	1	0.051	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	RPSAP52--HMGA2	2	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0255	FALSE	0	59	0	125	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	TFB1M--TMEM120B	2	0	TFB1M	1198	chr6:155635430:-	TMEM120B	21394	chr12:122199555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0255	0	TFB1M->chr6:155578643-155635627:-,transcription_factor_B1,_mitochondrial,TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0255	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	LDLR--BRK1	1	3	LDLR	7851	chr19:11216276:+	BRK1	28913	chr3:10167953:+	ONLY_REF_SPLICE	YES	315	450	0.01	0.01	0.0127	0.0382	{Klijn_CCL:Ovary=1},LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0509	FALSE	0	0	0	2	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	1	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	40	0.57	0.09	0.0127	0.0382	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	ONS76_CENTRAL_NERVOUS_SYSTEM	0.09	0.57	0.0509	FALSE	16	356	14	466	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	MIR205HG--PANK2	1	2	MIR205HG	4006	chr1:209605170:+	PANK2	16617	chr20:3899318:+	ONLY_REF_SPLICE	YES	1383	100	0	0.03	0.0127	0.0255	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2	ONS76_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.0382	FALSE	0	15	0	5	1	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0127	0.0255	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	ONS76_CENTRAL_NERVOUS_SYSTEM	1	1	0.0382	TRUE	274	363	69	150	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	TRPC4AP--AVPI1	1	2	TRPC4AP	7955	chr20:33632308:-	AVPI1	25357	chr10:99439672:-	ONLY_REF_SPLICE	YES	155	27	0.02	0.1	0.0127	0.0255	TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,AVPI1->Oncogene{Bushman},arginine_vasopressin_induced_1,chr10:99437181-99447080:-	ONS76_CENTRAL_NERVOUS_SYSTEM	0.02	0.1	0.0382	TRUE	0	0	0	2	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	XXyac-YX65C7_A.2--RNASET2	1	2	XXyac-YX65C7_A.2	2234	chr6:169614582:+	RNASET2	11366	chr6:167362113:-	ONLY_REF_SPLICE	NO	0	36	1	0.08	0.0127	0.0255	XXyac-YX65C7_A.2->chr6:169613349-169639660:+,RNASET2->Oncogene{Bushman},chr6:167342992-167370679:-,ribonuclease_T2	ONS76_CENTRAL_NERVOUS_SYSTEM	0.08	1	0.0382	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	CLPX--CCDC171	1	1	CLPX	1268	chr15:65477413:-	CCDC171	46959	chr9:15778966:+	ONLY_REF_SPLICE	YES	39	10	0.05	0.17	0.0127	0.0127	CLPX->caseinolytic_mitochondrial_matrix_peptidase_chaperone_subunit,chr15:65440557-65477680:-,CCDC171->chr9:15552895-16061661:+,coiled-coil_domain_containing_171	ONS76_CENTRAL_NERVOUS_SYSTEM	0.05	0.17	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	RPS6KA2--RP11-252P19.1	1	1	RPS6KA2	12660	chr6:166944720:-	RP11-252P19.1	43201	chr6:166188341:+	ONLY_REF_SPLICE	YES	12	0	0.14	1	0.0127	0.0127	RPS6KA2->chr6:166822852-167319939:-,ribosomal_protein_S6_kinase_A2,RP11-252P19.1->chr6:166167677-166189268:+	ONS76_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	URI1--ZNF536	1	1	URI1	11960	chr19:30477324:+	ZNF536	41024	chr19:31201664:+	ONLY_REF_SPLICE	YES	96	0	0.02	1	0.0127	0.0127	URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+,ZNF536->chr19:30719197-31204445:+,zinc_finger_protein_536	ONS76_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0254	TRUE	0	0	0	1	0	FALSE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	XXyac-YX65C7_A.2--RNASET2	1	1	XXyac-YX65C7_A.2	2234	chr6:169614582:+	RNASET2	15519	chr6:167352496:-	ONLY_REF_SPLICE	NO	0	37	1	0.05	0.0127	0.0127	XXyac-YX65C7_A.2->chr6:169613349-169639660:+,RNASET2->Oncogene{Bushman},chr6:167342992-167370679:-,ribonuclease_T2	ONS76_CENTRAL_NERVOUS_SYSTEM	0.05	1	0.0254	TRUE	0	0	0	1	0	TRUE	ACH-000776
ONS76_CENTRAL_NERVOUS_SYSTEM	ZNF791--TSR1	1	1	ZNF791	4345	chr19:12735524:+	TSR1	20481	chr17:2232769:-	ONLY_REF_SPLICE	YES	29	68	0.06	0.03	0.0127	0.0127	ZNF791->chr19:12721732-12742735:+,zinc_finger_protein_791,TSR1->TSR1,_ribosome_maturation_factor,chr17:2225797-2240801:-	ONS76_CENTRAL_NERVOUS_SYSTEM	0.03	0.06	0.0254	TRUE	0	0	0	1	0	FALSE	ACH-000776
G402_SOFT_TISSUE	TIMM23B--LINC00843	138	39	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.2598	0.356	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	G402_SOFT_TISSUE	0.99	1	1.6158	TRUE	508	994	45	981	0	FALSE	ACH-000375
G402_SOFT_TISSUE	TIMM23--RP11-464F9.1	74	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	229	4	0.25	0.95	0.6755	0.0091	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	G402_SOFT_TISSUE	0.25	0.95	0.6846	TRUE	519	3926	326	965	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-TA--MT-TC	60	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5477	0.0548	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	G402_SOFT_TISSUE	1	1	0.6025	FALSE	462	80	0	856	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-ND1--MT-RNR2	53	2	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	NO	29	38	0.65	0.59	0.4838	0.0183	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	G402_SOFT_TISSUE	0.59	0.65	0.5021	FALSE	92	22	4	61	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-ND6--MT-TE	51	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4656	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G402_SOFT_TISSUE	1	1	0.4656	FALSE	499	1288	110	792	0	FALSE	ACH-000375
G402_SOFT_TISSUE	KANSL1--ARL17B	43	20	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	30	59	0.68	0.52	0.3925	0.1826	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	G402_SOFT_TISSUE	0.52	0.68	0.5751	TRUE	181	1564	124	196	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-ND6--MT-TE	30	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2739	0.0091	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G402_SOFT_TISSUE	1	1	0.283	FALSE	499	1288	110	792	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-ND4--MT-ND1	27	0	MT-ND4	1213	chrM:10972:+	MT-ND1	5394	chrM:3322:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2465	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	G402_SOFT_TISSUE	1	1	0.2465	FALSE	51	50	3	16	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-ND6--MT-TE	24	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.87	1	0.2191	0.0913	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G402_SOFT_TISSUE	0.87	1	0.3104	FALSE	499	1288	110	792	0	FALSE	ACH-000375
G402_SOFT_TISSUE	CTB-78F1.2--TENM2	25	0	CTB-78F1.2	1045	chr5:167148412:+	TENM2	11546	chr5:167302991:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2282	0	NEIGHBORS_OVERLAP:+:+:[7761],CTB-78F1.2->chr5:167148368-167156129:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	G402_SOFT_TISSUE	1	1	0.2282	FALSE	1	3	0	6	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-TA--MT-TC	23	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.21	0.0548	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	G402_SOFT_TISSUE	1	1	0.2648	FALSE	462	80	0	856	0	FALSE	ACH-000375
G402_SOFT_TISSUE	ZNF654--HMGB2	24	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2191	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	G402_SOFT_TISSUE	1	1	0.2191	TRUE	0	0	0	518	0	FALSE	ACH-000375
G402_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	20	14	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	2	0.87	0.94	0.1826	0.1278	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	G402_SOFT_TISSUE	0.87	0.94	0.3104	FALSE	407	2205	196	549	0	FALSE	ACH-000375
G402_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	13	29	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	2	0.95	0.95	0.1187	0.2647	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	G402_SOFT_TISSUE	0.95	0.95	0.3834	FALSE	192	492	57	212	0	FALSE	ACH-000375
G402_SOFT_TISSUE	NPM1P24--SET	20	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1826	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	G402_SOFT_TISSUE	1	1	0.1826	TRUE	0	0	0	434	0	FALSE	ACH-000375
G402_SOFT_TISSUE	NPM1P24--SET	20	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1826	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	G402_SOFT_TISSUE	1	1	0.1826	TRUE	0	0	0	434	0	FALSE	ACH-000375
G402_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	17	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	13	0.82	0.64	0.1552	0.0548	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	G402_SOFT_TISSUE	0.64	0.82	0.21	FALSE	515	4851	409	746	0	FALSE	ACH-000375
G402_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	12	18	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	13	0.94	0.7	0.1095	0.1643	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	G402_SOFT_TISSUE	0.7	0.94	0.2738	FALSE	467	2173	244	435	0	FALSE	ACH-000375
G402_SOFT_TISSUE	RP11-680G10.1--GSE1	14	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	14	1	0.61	0.1278	0.073	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	G402_SOFT_TISSUE	0.61	1	0.2008	TRUE	458	1351	185	561	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-TA--MT-TC	11	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1004	0.0091	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	G402_SOFT_TISSUE	1	1	0.1095	FALSE	462	80	0	856	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-ND6--MT-TE	8	9	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0.0822	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G402_SOFT_TISSUE	1	1	0.1552	FALSE	499	1288	110	792	0	FALSE	ACH-000375
G402_SOFT_TISSUE	TMSB10--TMSB4X	9	3	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	2734	7165	0	0	0.0822	0.0274	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	G402_SOFT_TISSUE	0	0	0.1096	TRUE	0	1	0	17	1	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-ND4--MT-ND1	9	1	MT-ND4	2043	chrM:11802:+	MT-ND1	5745	chrM:3673:+	INCL_NON_REF_SPLICE	NO	8383	8679	0	0	0.0822	0.0091	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	G402_SOFT_TISSUE	0	0	0.0913	FALSE	51	52	3	16	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-ND6--MT-TE	6	12	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	5	0	0.78	1	0.0548	0.1095	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G402_SOFT_TISSUE	0.78	1	0.1643	FALSE	499	1288	110	792	0	FALSE	ACH-000375
G402_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	5	14	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	5	0	0.79	1	0.0456	0.1278	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	G402_SOFT_TISSUE	0.79	1	0.1734	FALSE	275	511	55	178	0	FALSE	ACH-000375
G402_SOFT_TISSUE	REV3L--RPL28	8	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.073	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	G402_SOFT_TISSUE	1	1	0.073	TRUE	22	156	2	142	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-ND1--MT-RNR2	6	6	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	9	0	0.57	1	0.0548	0.0548	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	G402_SOFT_TISSUE	0.57	1	0.1096	FALSE	114	26	4	85	0	FALSE	ACH-000375
G402_SOFT_TISSUE	TMSB10--TMSB4X	7	2	TMSB10	1438	chr2:85133186:+	TMSB4X	6247	chrX:12994426:+	INCL_NON_REF_SPLICE	YES	1078	3130	0.01	0	0.0639	0.0183	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	G402_SOFT_TISSUE	0	0.01	0.0822	FALSE	0	1	0	17	1	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-ND6--MT-TE	5	9	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0.0822	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G402_SOFT_TISSUE	1	1	0.1278	FALSE	499	1288	110	792	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-ND6--MT-TE	5	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0456	0.0822	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G402_SOFT_TISSUE	1	1	0.1278	FALSE	499	1288	110	792	0	FALSE	ACH-000375
G402_SOFT_TISSUE	RP11-114H23.1--RP11-114H23.2	7	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0639	0.0091	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	G402_SOFT_TISSUE	0.89	1	0.073	FALSE	81	155	12	160	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-ND6--MT-TE	4	11	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	5	0	0.75	1	0.0365	0.1004	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G402_SOFT_TISSUE	0.75	1	0.1369	FALSE	499	1288	110	792	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-ND1--MT-RNR2	5	6	MT-ND1	1454	chrM:3760:+	MT-RNR2	5501	chrM:2215:+	INCL_NON_REF_SPLICE	YES	35	4784	0.24	0	0.0456	0.0548	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	G402_SOFT_TISSUE	0	0.24	0.1004	FALSE	120	26	5	87	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-ND6--MT-TE	3	13	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.84	1	0.0274	0.1187	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G402_SOFT_TISSUE	0.84	1	0.1461	FALSE	499	1288	110	792	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-ND6--MT-TE	3	10	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0.0913	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G402_SOFT_TISSUE	1	1	0.1187	FALSE	499	1288	110	792	0	FALSE	ACH-000375
G402_SOFT_TISSUE	TMSB10--TMSB4X	5	2	TMSB10	1444	chr2:85133192:+	TMSB4X	6253	chrX:12994432:+	INCL_NON_REF_SPLICE	YES	1533	3924	0	0	0.0456	0.0183	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	G402_SOFT_TISSUE	0	0	0.0639	FALSE	0	1	0	17	1	FALSE	ACH-000375
G402_SOFT_TISSUE	COL1A2--PTMA	4	5	COL1A2	14602	chr7:94041987:+	PTMA	37657	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	3315	3	0	0.75	0.0365	0.0456	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	G402_SOFT_TISSUE	0	0.75	0.0821	FALSE	0	0	0	9	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-ND1--MT-RNR2	3	9	MT-ND1	1482	chrM:3788:+	MT-RNR2	4976	chrM:1690:+	INCL_NON_REF_SPLICE	YES	46	0	0.21	1	0.0274	0.0822	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	G402_SOFT_TISSUE	0.21	1	0.1096	FALSE	114	26	4	85	0	FALSE	ACH-000375
G402_SOFT_TISSUE	MT-TA--MT-TC	3	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0.0639	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	G402_SOFT_TISSUE	1	1	0.0913	FALSE	462	80	0	856	0	FALSE	ACH-000375
G402_SOFT_TISSUE	FLRT2--LINC00911	4	0	FLRT2	1391	chr14:85996878:+	LINC00911	21941	chr14:85886028:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0365	0	FLRT2->chr14:85996488-86095034:+,fibronectin_leucine_rich_transmembrane_protein_2,LINC00911->chr14:85860223-85886418:+,long_intergenic_non-protein_coding_RNA_911	G402_SOFT_TISSUE	1	1	0.0365	TRUE	0	0	0	1	0	TRUE	ACH-000375
G402_SOFT_TISSUE	MT-ND6--MT-TE	3	4	MT-ND6	1029	chrM:14645:-	MT-TE	4495	chrM:14773:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0.0365	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	G402_SOFT_TISSUE	1	1	0.0639	FALSE	499	1288	110	792	0	FALSE	ACH-000375
G402_SOFT_TISSUE	APP--MT-CO3	3	1	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	859	8634	0	0	0.0274	0.0091	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	G402_SOFT_TISSUE	0	0	0.0365	FALSE	0	0	0	26	0	FALSE	ACH-000375
G402_SOFT_TISSUE	CTB-78F1.2--TENM2	3	0	CTB-78F1.2	1045	chr5:167148412:+	TENM2	14028	chr5:167379593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0274	0	NEIGHBORS_OVERLAP:+:+:[7761],CTB-78F1.2->chr5:167148368-167156129:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	G402_SOFT_TISSUE	1	1	0.0274	FALSE	1	4	0	8	0	FALSE	ACH-000375
G402_SOFT_TISSUE	ISPD--SOSTDC1	3	0	ISPD	2534	chr7:16445686:-	SOSTDC1	18686	chr7:16505169:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0274	0	LOCAL_REARRANGEMENT:-:[40159],ISPD->chr7:16130817-16460947:-,isoprenoid_synthase_domain_containing,SOSTDC1->chr7:16501106-16570205:-,sclerostin_domain_containing_1	G402_SOFT_TISSUE	1	1	0.0274	TRUE	0	0	0	1	0	TRUE	ACH-000375
G402_SOFT_TISSUE	RP11-680G10.1--GSE1	2	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	65	1	0.07	0.0183	0.0274	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	G402_SOFT_TISSUE	0.07	1	0.0457	TRUE	465	1949	224	605	0	FALSE	ACH-000375
G402_SOFT_TISSUE	GPR125--MTCH2	2	0	GPR125	17445	chr4:22425814:-	MTCH2	43720	chr11:47648679:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	GPR125->chr4:22346694-22517677:-,MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2	G402_SOFT_TISSUE	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000375
G402_SOFT_TISSUE	MED13L--RIMS2	2	0	MED13L	6460	chr12:116534474:-	RIMS2	80184	chr8:105257144:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,RIMS2->chr8:104512976-105268322:+,regulating_synaptic_membrane_exocytosis_2	G402_SOFT_TISSUE	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000375
G402_SOFT_TISSUE	RP11-166D19.1--DNM3OS	2	0	RP11-166D19.1	5868	chr11:121971082:-	DNM3OS	18442	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	GTEx_FI:{Ovary=[count:4=pct:7.5],Blood_Vessel=[count:3=pct:0.8],Thyroid=[count:2=pct:1.1],Uterus=[count:1=pct:2.3],Esophagus=[count:1=pct:0.2]},RP11-166D19.1->chr11:121899063-121987031:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	G402_SOFT_TISSUE	1	1	0.0183	TRUE	11	20	1	11	0	FALSE	ACH-000375
G402_SOFT_TISSUE	STXBP1--NCL	2	0	STXBP1	1176	chr9:130374719:+	NCL	38606	chr2:232321835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	STXBP1->chr9:130374544-130457460:+,syntaxin_binding_protein_1,NCL->chr2:232318242-232348352:-,nucleolin	G402_SOFT_TISSUE	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000375
G402_SOFT_TISSUE	TMCO4--CNPPD1	2	0	TMCO4	17858	chr1:20027261:-	CNPPD1	25468	chr2:220041569:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0183	0	TMCO4->chr1:20008706-20126438:-,transmembrane_and_coiled-coil_domains_4,CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1	G402_SOFT_TISSUE	1	1	0.0183	TRUE	0	0	0	1	0	TRUE	ACH-000375
G402_SOFT_TISSUE	KANSL1--ARL17B	1	3	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	35	59	0.1	0.06	0.0091	0.0274	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	G402_SOFT_TISSUE	0.06	0.1	0.0365	TRUE	105	90	7	93	0	FALSE	ACH-000375
G402_SOFT_TISSUE	RP11-120D5.1--ARHGAP6	1	1	RP11-120D5.1	2349	chrX:11125021:-	ARHGAP6	31904	chrX:11174746:-	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0091	0.0091	LOCAL_REARRANGEMENT:-:[6978],RP11-120D5.1->chrX:10865996-11129261:-,ARHGAP6->Rho_GTPase_activating_protein_6,chrX:11136239-11683821:-	G402_SOFT_TISSUE	0.33	1	0.0182	TRUE	0	0	0	1	0	TRUE	ACH-000375
G402_SOFT_TISSUE	SUMF2--CCT6A	1	1	SUMF2	3658	chr7:56140804:+	CCT6A	20326	chr7:56127962:+	ONLY_REF_SPLICE	YES	230	729	0.01	0	0.0091	0.0091	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[13],SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	G402_SOFT_TISSUE	0	0.01	0.0182	FALSE	0	5	0	5	0	FALSE	ACH-000375
SIHA_CERVIX	ATP2A2--IFT81	367	170	ATP2A2	22424	chr12:110783187:+	IFT81	55642	chr12:110655849:+	ONLY_REF_SPLICE	YES	1010	94	0.35	0.85	3.8576	1.7869	YOSHIHARA_TCGA_num_samples[LUAD:2],{Klijn_CCL:Stomach=1,Cervix=1},LOCAL_REARRANGEMENT:+:[61959],ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+,IFT81->chr12:110562140-110656602:+,intraflagellar_transport_81	SIHA_CERVIX	0.35	0.85	5.6445	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	CHMP4B--NCOA6	115	48	CHMP4B	1355	chr20:32399464:+	NCOA6	34617	chr20:33303169:-	ONLY_REF_SPLICE	YES	1187	96	0.12	0.63	1.2088	0.5045	{Klijn_CCL:Cervix=1},CHMP4B->charged_multivesicular_body_protein_4B,chr20:32399110-32442172:+,NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6	SIHA_CERVIX	0.12	0.63	1.7133	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	TIMM23B--LINC00843	87	44	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9145	0.4625	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SIHA_CERVIX	1	1	1.377	TRUE	508	994	45	981	0	FALSE	ACH-000556
SIHA_CERVIX	XRCC6--CENPM	83	28	XRCC6	1968	chr22:42018090:+	CENPM	18054	chr22:42342500:-	ONLY_REF_SPLICE	YES	1768	229	0.06	0.33	0.8724	0.2943	XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+,CENPM->centromere_protein_M,chr22:42334725-42343168:-	SIHA_CERVIX	0.06	0.33	1.1667	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	CDH13--HYDIN	75	16	CDH13	1335	chr16:82660742:+	HYDIN	68910	chr16:71054220:-	ONLY_REF_SPLICE	YES	165	0	0.36	1	0.7883	0.1682	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SIHA_CERVIX	0.36	1	0.9565	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	DDAH1--NEGR1	49	57	DDAH1	5553	chr1:85961849:-	NEGR1	34373	chr1:71873253:-	ONLY_REF_SPLICE	YES	132	0	0.45	1	0.5151	0.5991	DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1	SIHA_CERVIX	0.45	1	1.1142	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	RIPK1--NQO2	58	19	RIPK1	7996	chr6:3085642:+	NQO2	32460	chr6:3017118:+	ONLY_REF_SPLICE	YES	80	155	0.49	0.33	0.6097	0.1997	GTEx_v2:{count=2;pct=0.02%;dist=Pancreas=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_REARRANGEMENT:+:[44229],RIPK1->chr6:3064225-3115421:+,receptor_interacting_serine/threonine_kinase_1,NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+	SIHA_CERVIX	0.33	0.49	0.8094	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	TIMM23--RP11-464F9.1	57	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	245	8	0.19	0.88	0.5991	0.021	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SIHA_CERVIX	0.19	0.88	0.6201	TRUE	519	3926	326	965	0	FALSE	ACH-000556
SIHA_CERVIX	PLXDC1--TAF13	54	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5676	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SIHA_CERVIX	1	1	0.5676	TRUE	7	10	0	216	0	FALSE	ACH-000556
SIHA_CERVIX	ATP2A2--IFT81	1	170	ATP2A2	22424	chr12:110783187:+	IFT81	54516	chr12:110654513:+	ONLY_REF_SPLICE	NO	1010	97	0.14	0.64	0.0105	1.7869	YOSHIHARA_TCGA_num_samples[LUAD:2],{Klijn_CCL:Stomach=1,Cervix=1},LOCAL_REARRANGEMENT:+:[61959],ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+,IFT81->chr12:110562140-110656602:+,intraflagellar_transport_81	SIHA_CERVIX	0.14	0.64	1.7974	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	TMEM104--JUP	43	2	TMEM104	1893	chr17:72773514:+	JUP	20992	chr17:39928114:-	ONLY_REF_SPLICE	YES	83	388	0.35	0.1	0.452	0.021	GTEx&tcga_normals:1/3694=0.03%,TMEM104->Oncogene{Bushman},chr17:72772622-72835918:+,transmembrane_protein_104,JUP->chr17:39775692-39943183:-,junction_plakoglobin	SIHA_CERVIX	0.1	0.35	0.473	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	MT-TA--MT-TC	42	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4415	0.021	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SIHA_CERVIX	1	1	0.4625	FALSE	462	80	0	856	0	FALSE	ACH-000556
SIHA_CERVIX	DDAH1--NEGR1	22	72	DDAH1	10736	chr1:85930426:-	NEGR1	34373	chr1:71873253:-	ONLY_REF_SPLICE	YES	140	0	0.4	1	0.2312	0.7568	DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1	SIHA_CERVIX	0.4	1	0.988	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	RP11-123O10.4--GRIP1	34	14	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3574	0.1472	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SIHA_CERVIX	1	1	0.5046	FALSE	416	2512	207	587	0	FALSE	ACH-000556
SIHA_CERVIX	AMBRA1--ARHGAP1	33	13	AMBRA1	17529	chr11:46515158:-	ARHGAP1	35902	chr11:46709810:-	ONLY_REF_SPLICE	YES	53	152	0.46	0.23	0.3469	0.1366	YOSHIHARA_TCGA_num_samples[LUAD:2],{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[82955],AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,ARHGAP1->Rho_GTPase_activating_protein_1,chr11:46698630-46722165:-	SIHA_CERVIX	0.23	0.46	0.4835	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	KIFC3--CNGB1	35	1	KIFC3	4565	chr16:57836282:-	CNGB1	66819	chr16:57918361:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.3679	0.0105	{Klijn_CCL:Kidney=1},LOCAL_REARRANGEMENT:-:[20546],KIFC3->chr16:57792129-57896957:-,kinesin_family_member_C3,CNGB1->chr16:57917503-58005020:-,cyclic_nucleotide_gated_channel_beta_1	SIHA_CERVIX	0.97	1	0.3784	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	AGFG1--AC097662.2	28	15	AGFG1	2531	chr2:228356356:+	AC097662.2	31383	chr2:228146505:-	ONLY_REF_SPLICE	YES	44	4	0.49	0.91	0.2943	0.1577	AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,AC097662.2->chr2:228085768-228189917:-	SIHA_CERVIX	0.49	0.91	0.452	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	PIEZO1--CBFA2T3	26	3	PIEZO1	1311	chr16:88851309:-	CBFA2T3	38097	chr16:88952550:-	ONLY_REF_SPLICE	YES	44	1	0.4	0.97	0.2733	0.0315	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:-:[89647],PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1,CBFA2T3->CBFA2/RUNX1_translocation_partner_3,Oncogene{Bushman},chr16:88941266-89043612:-	SIHA_CERVIX	0.4	0.97	0.3048	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	HSPBP1--ZSWIM6	24	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2523	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	SIHA_CERVIX	1	1	0.2523	TRUE	47	32	1	28	0	FALSE	ACH-000556
SIHA_CERVIX	OR51S1--TP53I11	24	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2523	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SIHA_CERVIX	1	1	0.2523	TRUE	402	216	10	229	0	FALSE	ACH-000556
SIHA_CERVIX	CDH13--HYDIN	13	32	CDH13	3588	chr16:82673070:+	HYDIN	68910	chr16:71054220:-	ONLY_REF_SPLICE	YES	196	0	0.19	1	0.1366	0.3364	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SIHA_CERVIX	0.19	1	0.473	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	GCAT--GGA1	17	9	GCAT	1259	chr22:38204170:+	GGA1	15123	chr22:38010197:+	ONLY_REF_SPLICE	YES	164	28	0.14	0.48	0.1787	0.0946	{Klijn_CCL:Cervix=1},GCAT->chr22:38203912-38213183:+,glycine_C-acetyltransferase,GGA1->Oncogene{Bushman},chr22:38004481-38029571:+,golgi-associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_1	SIHA_CERVIX	0.14	0.48	0.2733	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	NRIP1--AF127936.7	18	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1892	0.0105	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SIHA_CERVIX	1	1	0.1997	FALSE	292	1546	117	613	0	FALSE	ACH-000556
SIHA_CERVIX	MAP4K5--LINC00085	16	6	MAP4K5	3887	chr14:50998660:-	LINC00085	41183	chr19:52204911:+	ONLY_REF_SPLICE	YES	66	111	0.25	0.17	0.1682	0.0631	MAP4K5->chr14:50885219-51027844:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_5,LINC00085->chr19:52196593-52215640:+	SIHA_CERVIX	0.17	0.25	0.2313	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	MT-ND1--MT-RNR2	17	2	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	42	0	0.31	1	0.1787	0.021	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SIHA_CERVIX	0.31	1	0.1997	FALSE	114	26	4	85	0	FALSE	ACH-000556
SIHA_CERVIX	SLC7A5--MT-ND4L	13	16	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	6480	0	0	1	0.1366	0.1682	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SIHA_CERVIX	0	1	0.3048	FALSE	0	0	0	23	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ND6--MT-TE	15	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1577	0.0631	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIHA_CERVIX	1	1	0.2208	FALSE	499	1288	110	792	0	FALSE	ACH-000556
SIHA_CERVIX	DDAH1--NEGR1	2	57	DDAH1	6990	chr1:85960412:-	NEGR1	34373	chr1:71873253:-	ONLY_REF_SPLICE	YES	106	0	0.36	1	0.021	0.5991	DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1	SIHA_CERVIX	0.36	1	0.6201	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	RCOR1--ZNF710	14	6	RCOR1	1665	chr14:103059662:+	ZNF710	21264	chr15:90610342:+	ONLY_REF_SPLICE	YES	28	2	0.42	0.91	0.1472	0.0631	RCOR1->REST_corepressor_1,chr14:103058998-103196913:+,ZNF710->chr15:90544624-90625438:+,zinc_finger_protein_710	SIHA_CERVIX	0.42	0.91	0.2103	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	FTH1--ACTG1	13	3	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	3784	1	0	0.94	0.1366	0.0315	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SIHA_CERVIX	0	0.94	0.1681	TRUE	0	0	0	64	0	FALSE	ACH-000556
SIHA_CERVIX	PFKL--MT-ND4L	11	7	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1607	0	0.01	1	0.1156	0.0736	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SIHA_CERVIX	0.01	1	0.1892	FALSE	0	0	0	33	0	FALSE	ACH-000556
SIHA_CERVIX	RNF13--RP13-34L8.7	11	7	RNF13	8097	chr3:149589941:+	RP13-34L8.7	20469	chrX:52576582:+	ONLY_REF_SPLICE	YES	70	0	0.2	1	0.1156	0.0736	RNF13->chr3:149530495-149679926:+,ring_finger_protein_13,RP13-34L8.7->chrX:52574163-52576707:+	SIHA_CERVIX	0.2	1	0.1892	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	MT-ND6--MT-TE	11	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1156	0.0631	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIHA_CERVIX	1	1	0.1787	FALSE	499	1288	110	792	0	FALSE	ACH-000556
SIHA_CERVIX	CHMP4B--PIGU	10	5	CHMP4B	1355	chr20:32399464:+	PIGU	10798	chr20:33245048:-	ONLY_REF_SPLICE	YES	1187	285	0.01	0.05	0.1051	0.0526	{Klijn_CCL:Cervix=1},CHMP4B->charged_multivesicular_body_protein_4B,chr20:32399110-32442172:+,PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U	SIHA_CERVIX	0.01	0.05	0.1577	TRUE	0	0	0	1	0	FALSE	ACH-000556
SIHA_CERVIX	PSMD5--C5	8	12	PSMD5	1248	chr9:123605015:-	C5	53861	chr9:123726016:-	ONLY_REF_SPLICE	YES	267	6	0.07	0.77	0.0841	0.1261	{Klijn_CCL:Cervix=1},PSMD5->chr9:123577774-123605262:-,proteasome_26S_subunit,_non-ATPase_5,C5->chr9:123714616-123812554:-,complement_component_5	SIHA_CERVIX	0.07	0.77	0.2102	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	DDAH1--NEGR1	2	34	DDAH1	1267	chr1:86043667:-	NEGR1	34373	chr1:71873253:-	ONLY_REF_SPLICE	NO	143	0	0.2	1	0.021	0.3574	DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1	SIHA_CERVIX	0.2	1	0.3784	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	RANGAP1--PHF5A	7	14	RANGAP1	1266	chr22:41681990:-	PHF5A	25916	chr22:41856491:-	ONLY_REF_SPLICE	YES	815	547	0.03	0.04	0.0736	0.1472	RANGAP1->Ran_GTPase_activating_protein_1,chr22:41641615-41682255:-,PHF5A->PHD_finger_protein_5A,chr22:41855721-41864729:-	SIHA_CERVIX	0.03	0.04	0.2208	TRUE	0	0	0	1	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ND6--MT-TE	9	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.82	1	0.0946	0.0526	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIHA_CERVIX	0.82	1	0.1472	FALSE	499	1288	110	792	0	FALSE	ACH-000556
SIHA_CERVIX	HSPBP1--GRK5	10	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1051	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SIHA_CERVIX	1	1	0.1051	TRUE	1	39	0	134	39	FALSE	ACH-000556
SIHA_CERVIX	MT-ND4--MT-ATP8	10	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1051	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SIHA_CERVIX	1	1	0.1051	FALSE	230	198	14	283	0	FALSE	ACH-000556
SIHA_CERVIX	FTH1--ACTG1	9	3	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	3849	1	0	0.92	0.0946	0.0315	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SIHA_CERVIX	0	0.92	0.1261	TRUE	0	0	0	64	0	FALSE	ACH-000556
SIHA_CERVIX	DDAH1--NEGR1	1	34	DDAH1	3294	chr1:86041515:-	NEGR1	34373	chr1:71873253:-	ONLY_REF_SPLICE	NO	176	0	0.17	1	0.0105	0.3574	DDAH1->chr1:85784164-86043933:-,dimethylarginine_dimethylaminohydrolase_1,NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1	SIHA_CERVIX	0.17	1	0.3679	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	MT-ND4--MT-ATP8	9	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0946	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SIHA_CERVIX	1	1	0.0946	FALSE	230	193	14	283	0	FALSE	ACH-000556
SIHA_CERVIX	SLC38A9--CTD-2288O8.1	7	6	SLC38A9	7186	chr5:54993674:-	CTD-2288O8.1	35936	chr5:51981524:-	ONLY_REF_SPLICE	YES	40	0	0.25	1	0.0736	0.0631	SLC38A9->chr5:54921673-55069022:-,solute_carrier_family_38_member_9,CTD-2288O8.1->chr5:51971027-52083860:-	SIHA_CERVIX	0.25	1	0.1367	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	MT-ND4--MT-ATP8	7	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14636	43	0	0.22	0.0736	0.0526	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SIHA_CERVIX	0	0.22	0.1262	FALSE	231	217	16	283	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ND6--MT-TE	5	13	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.0526	0.1366	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIHA_CERVIX	0.86	1	0.1892	FALSE	499	1288	110	792	0	FALSE	ACH-000556
SIHA_CERVIX	NRIP1--AF127936.7	7	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.67	1	0.0736	0.0526	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SIHA_CERVIX	0.67	1	0.1262	FALSE	125	705	46	456	0	FALSE	ACH-000556
SIHA_CERVIX	AGFG1--AC097662.2	5	10	AGFG1	2531	chr2:228356356:+	AC097662.2	32469	chr2:228144294:-	ONLY_REF_SPLICE	YES	44	8	0.25	0.65	0.0526	0.1051	AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,AC097662.2->chr2:228085768-228189917:-	SIHA_CERVIX	0.25	0.65	0.1577	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	RP11-680G10.1--GSE1	7	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	190	1	0.05	0.0736	0.021	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SIHA_CERVIX	0.05	1	0.0946	TRUE	465	1949	224	605	0	FALSE	ACH-000556
SIHA_CERVIX	NAT9--NT5C3B	7	1	NAT9	5413	chr17:72767834:-	NT5C3B	11990	chr17:39988729:-	ONLY_REF_SPLICE	YES	113	219	0.07	0.04	0.0736	0.0105	NAT9->N-acetyltransferase_9_(putative),chr17:72766686-72772506:-,NT5C3B->5'-nucleotidase,_cytosolic_IIIB,chr17:39981335-39992523:-	SIHA_CERVIX	0.04	0.07	0.0841	TRUE	0	0	0	1	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ND6--MT-TE	5	7	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0.0736	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIHA_CERVIX	1	1	0.1262	FALSE	499	1288	110	792	0	FALSE	ACH-000556
SIHA_CERVIX	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0631	0.0315	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SIHA_CERVIX	1	1	0.0946	FALSE	462	80	0	856	0	FALSE	ACH-000556
SIHA_CERVIX	CDH13--HYDIN	1	21	CDH13	2482	chr16:82671372:+	HYDIN	68910	chr16:71054220:-	ONLY_REF_SPLICE	YES	198	0	0.1	1	0.0105	0.2207	CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SIHA_CERVIX	0.1	1	0.2312	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	GCAT--GGA1	3	12	GCAT	2468	chr22:38206164:+	GGA1	15123	chr22:38010197:+	ONLY_REF_SPLICE	YES	119	28	0.11	0.35	0.0315	0.1261	{Klijn_CCL:Cervix=1},GCAT->chr22:38203912-38213183:+,glycine_C-acetyltransferase,GGA1->Oncogene{Bushman},chr22:38004481-38029571:+,golgi-associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_1	SIHA_CERVIX	0.11	0.35	0.1576	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	NRIP1--AF127936.7	4	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.44	1	0.042	0.0736	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SIHA_CERVIX	0.44	1	0.1156	FALSE	164	806	69	479	0	FALSE	ACH-000556
SIHA_CERVIX	RAB34--NEK8	5	3	RAB34	3789	chr17:27042659:-	NEK8	15623	chr17:27067481:+	ONLY_REF_SPLICE	YES	665	21	0.01	0.28	0.0526	0.0315	{Klijn_CCL:Cervix=1},LOCAL_INVERSION:-:+:[7468],RAB34->RAB34,_member_RAS_oncogene_family,chr17:27041299-27045447:-,NEK8->NIMA_related_kinase_8,chr17:27052915-27070473:+	SIHA_CERVIX	0.01	0.28	0.0841	FALSE	0	0	0	1	0	FALSE	ACH-000556
SIHA_CERVIX	AGFG1--AC097662.2	4	5	AGFG1	2531	chr2:228356356:+	AC097662.2	33565	chr2:228133485:-	ONLY_REF_SPLICE	YES	44	16	0.17	0.36	0.042	0.0526	AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,AC097662.2->chr2:228085768-228189917:-	SIHA_CERVIX	0.17	0.36	0.0946	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	FTL--MT-CO1	5	1	FTL	1134	chr19:49468691:+	MT-CO1	6232	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4621	18448	0	0	0.0526	0.0105	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SIHA_CERVIX	0	0	0.0631	FALSE	0	7	0	14	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ND4--MT-ATP8	4	5	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	14969	0	0	1	0.042	0.0526	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SIHA_CERVIX	0	1	0.0946	FALSE	231	217	16	283	0	FALSE	ACH-000556
SIHA_CERVIX	SLC7A5--TPM2	4	5	SLC7A5	11739	chr16:87866470:-	TPM2	18672	chr9:35689926:-	INCL_NON_REF_SPLICE	YES	4297	25	0	0.26	0.042	0.0526	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	SIHA_CERVIX	0	0.26	0.0946	FALSE	0	0	0	1	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ATP6--MT-CO1	5	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SIHA_CERVIX	1	1	0.0526	FALSE	183	104	9	328	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ND1--MT-RNR2	4	4	MT-ND1	1297	chrM:3603:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	52	0	0.13	1	0.042	0.042	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SIHA_CERVIX	0.13	1	0.084	FALSE	114	26	4	85	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ND4--MT-ATP8	3	8	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13007	43	0	0.2	0.0315	0.0841	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SIHA_CERVIX	0	0.2	0.1156	FALSE	231	217	16	283	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ND4--MT-ATP8	3	8	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	13007	157	0	0.07	0.0315	0.0841	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SIHA_CERVIX	0	0.07	0.1156	FALSE	231	217	16	283	0	FALSE	ACH-000556
SIHA_CERVIX	XXbac-BPG252P9.9--TUBBP2	5	0	XXbac-BPG252P9.9	1083	chr6:30691572:-	TUBBP2	4900	chr13:41959193:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SIHA_CERVIX	1	1	0.0526	TRUE	0	1	0	48	1	FALSE	ACH-000556
SIHA_CERVIX	SLC7A5--ACTG1	4	3	SLC7A5	8075	chr16:87871467:-	ACTG1	21185	chr17:79478596:-	INCL_NON_REF_SPLICE	YES	8178	13106	0	0	0.042	0.0315	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SIHA_CERVIX	0	0	0.0735	FALSE	0	0	0	11	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ND1--MT-RNR2	4	2	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	42	0	0.12	1	0.042	0.021	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SIHA_CERVIX	0.12	1	0.063	FALSE	114	26	4	85	0	FALSE	ACH-000556
SIHA_CERVIX	RANGAP1--PHF5A	1	14	RANGAP1	1708	chr22:41681548:-	PHF5A	25916	chr22:41856491:-	ONLY_REF_SPLICE	YES	863	547	0.02	0.03	0.0105	0.1472	RANGAP1->Ran_GTPase_activating_protein_1,chr22:41641615-41682255:-,PHF5A->PHD_finger_protein_5A,chr22:41855721-41864729:-	SIHA_CERVIX	0.02	0.03	0.1577	TRUE	0	0	0	1	0	FALSE	ACH-000556
SIHA_CERVIX	RP11-123O10.4--GRIP1	1	14	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0105	0.1472	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SIHA_CERVIX	1	1	0.1577	FALSE	9	21	5	22	0	FALSE	ACH-000556
SIHA_CERVIX	ARHGAP1--CKAP5	4	1	ARHGAP1	3978	chr11:46717210:-	CKAP5	44466	chr11:46786806:-	ONLY_REF_SPLICE	YES	158	246	0.03	0.02	0.042	0.0105	LOCAL_REARRANGEMENT:-:[42433],ARHGAP1->Rho_GTPase_activating_protein_1,chr11:46698630-46722165:-,CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5	SIHA_CERVIX	0.02	0.03	0.0525	TRUE	0	0	0	1	0	FALSE	ACH-000556
SIHA_CERVIX	FTL--MT-CO1	4	1	FTL	1122	chr19:49468679:+	MT-CO1	6221	chrM:6546:+	INCL_NON_REF_SPLICE	YES	1068	17955	0	0	0.042	0.0105	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SIHA_CERVIX	0	0	0.0525	FALSE	0	7	0	14	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ND6--MT-TE	3	5	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	4	0	0.67	1	0.0315	0.0526	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIHA_CERVIX	0.67	1	0.0841	FALSE	499	1288	110	792	0	FALSE	ACH-000556
SIHA_CERVIX	PVT1--RP11-103H7.1	4	1	PVT1	13955	chr8:129001537:+	RP11-103H7.1	30635	chr8:127504610:+	ONLY_REF_SPLICE	YES	57	3	0.08	0.62	0.042	0.0105	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-103H7.1->chr8:127486434-127504841:+	SIHA_CERVIX	0.08	0.62	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	SLC7A5--MT-ND4L	4	1	SLC7A5	8026	chr16:87871516:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	9069	0	0	1	0.042	0.0105	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SIHA_CERVIX	0	1	0.0525	FALSE	0	0	0	1	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ND1--MT-RNR2	3	4	MT-ND1	1291	chrM:3597:+	MT-RNR2	4993	chrM:1707:+	INCL_NON_REF_SPLICE	YES	49	0	0.12	1	0.0315	0.042	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SIHA_CERVIX	0.12	1	0.0735	FALSE	114	26	4	85	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.042	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SIHA_CERVIX	1	1	0.042	FALSE	499	1288	110	792	0	FALSE	ACH-000556
SIHA_CERVIX	SLC1A5--MT-ND4L	4	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.042	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SIHA_CERVIX	1	1	0.042	FALSE	0	0	0	189	0	FALSE	ACH-000556
SIHA_CERVIX	SLC7A5--ACTG1	3	4	SLC7A5	8068	chr16:87871474:-	ACTG1	21178	chr17:79478603:-	INCL_NON_REF_SPLICE	YES	8119	13254	0	0	0.0315	0.042	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SIHA_CERVIX	0	0	0.0735	FALSE	0	0	0	11	0	FALSE	ACH-000556
SIHA_CERVIX	FTH1--ACTG1	3	3	FTH1	1187	chr11:61734946:-	ACTG1	10556	chr17:79479820:-	INCL_NON_REF_SPLICE	YES	3130	1	0	0.86	0.0315	0.0315	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SIHA_CERVIX	0	0.86	0.063	FALSE	0	0	0	64	0	FALSE	ACH-000556
SIHA_CERVIX	CTC-228N24.2--CTC-228N24.3	3	2	CTC-228N24.2	1191	chr5:127193306:-	CTC-228N24.3	17759	chr5:127302620:-	ONLY_REF_SPLICE	YES	0	58	1	0.08	0.0315	0.021	LOCAL_REARRANGEMENT:-:[82622],CTC-228N24.2->chr5:127174178-127193496:-,CTC-228N24.3->chr5:127276118-127418864:-	SIHA_CERVIX	0.08	1	0.0525	TRUE	0	1	0	12	1	TRUE	ACH-000556
SIHA_CERVIX	MT-ND1--MT-RNR2	3	2	MT-ND1	1272	chrM:3578:+	MT-RNR2	5546	chrM:2260:+	INCL_NON_REF_SPLICE	YES	43	8652	0.1	0	0.0315	0.021	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SIHA_CERVIX	0	0.1	0.0525	FALSE	120	26	5	87	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ND4--MT-ATP8	3	2	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	18397	592	0	0.01	0.0315	0.021	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SIHA_CERVIX	0	0.01	0.0525	FALSE	231	217	16	283	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ND4--MT-ATP8	3	2	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	17159	0	0	1	0.0315	0.021	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SIHA_CERVIX	0	1	0.0525	FALSE	231	217	16	283	0	FALSE	ACH-000556
SIHA_CERVIX	XXbac-BPG252P9.9--TUBBP2	3	2	XXbac-BPG252P9.9	1385	chr6:30691270:-	TUBBP2	4818	chr13:41959275:-	INCL_NON_REF_SPLICE	YES	1417	0	0	1	0.0315	0.021	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SIHA_CERVIX	0	1	0.0525	FALSE	0	1	0	48	1	FALSE	ACH-000556
SIHA_CERVIX	CTD-2337A12.1--CAST	3	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	318	1	0.01	0.0315	0.0105	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SIHA_CERVIX	0.01	1	0.042	FALSE	347	1186	183	220	0	FALSE	ACH-000556
SIHA_CERVIX	NAT9--NT5C3B	3	1	NAT9	5413	chr17:72767834:-	NT5C3B	11764	chr17:39988955:-	ONLY_REF_SPLICE	YES	113	237	0.03	0.02	0.0315	0.0105	NAT9->N-acetyltransferase_9_(putative),chr17:72766686-72772506:-,NT5C3B->5'-nucleotidase,_cytosolic_IIIB,chr17:39981335-39992523:-	SIHA_CERVIX	0.02	0.03	0.042	TRUE	0	0	0	1	0	FALSE	ACH-000556
SIHA_CERVIX	AC097662.2--AGFG1	3	0	AC097662.2	1034	chr2:228189884:-	AGFG1	25815	chr2:228384664:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0	AC097662.2->chr2:228085768-228189917:-,AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+	SIHA_CERVIX	1	1	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	AGFG1--AC097662.2	1	8	AGFG1	1437	chr2:228337304:+	AC097662.2	31383	chr2:228146505:-	ONLY_REF_SPLICE	YES	33	4	0.21	0.69	0.0105	0.0841	AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,AC097662.2->chr2:228085768-228189917:-	SIHA_CERVIX	0.21	0.69	0.0946	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	HSPBP1--ZSWIM6	3	0	HSPBP1	1850	chr19:55790900:-	ZSWIM6	11317	chr5:60628540:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	SIHA_CERVIX	1	1	0.0315	TRUE	47	32	1	28	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ND4--MT-ATP8	3	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SIHA_CERVIX	1	1	0.0315	FALSE	231	205	14	283	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SIHA_CERVIX	1	1	0.0315	FALSE	231	204	14	283	0	FALSE	ACH-000556
SIHA_CERVIX	MT-ND4--MT-CO2	3	0	MT-ND4	1220	chrM:10979:+	MT-CO2	5458	chrM:7665:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SIHA_CERVIX	1	1	0.0315	FALSE	5	1	0	19	0	FALSE	ACH-000556
SIHA_CERVIX	RP11-123O10.4--GRIP1	2	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0.042	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SIHA_CERVIX	1	1	0.063	FALSE	93	270	15	244	0	FALSE	ACH-000556
SIHA_CERVIX	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	SIHA_CERVIX	1	1	0.0315	TRUE	0	1	0	48	1	FALSE	ACH-000556
SIHA_CERVIX	RNF111--FAM63B	2	2	RNF111	2542	chr15:59280267:+	FAM63B	29056	chr15:59080105:+	ONLY_REF_SPLICE	YES	50	37	0.07	0.1	0.021	0.021	LOCAL_REARRANGEMENT:+:[3275],RNF111->chr15:59157374-59389618:+,ring_finger_protein_111,FAM63B->chr15:59063391-59154099:+,family_with_sequence_similarity_63_member_B	SIHA_CERVIX	0.07	0.1	0.042	TRUE	0	0	0	1	0	FALSE	ACH-000556
SIHA_CERVIX	TMEM104--JUP	2	2	TMEM104	1893	chr17:72773514:+	JUP	19928	chr17:39929178:-	ONLY_REF_SPLICE	YES	83	401	0.05	0.01	0.021	0.021	GTEx&tcga_normals:1/3694=0.03%,TMEM104->Oncogene{Bushman},chr17:72772622-72835918:+,transmembrane_protein_104,JUP->chr17:39775692-39943183:-,junction_plakoglobin	SIHA_CERVIX	0.01	0.05	0.042	FALSE	0	0	0	1	0	FALSE	ACH-000556
SIHA_CERVIX	YWHAE--GNAS	2	2	YWHAE	1332	chr17:1303341:-	GNAS	30056	chr20:57470667:+	ONLY_REF_SPLICE	YES	3436	1722	0	0	0.021	0.021	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Colon_-_Transverse=1},YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SIHA_CERVIX	0	0	0.042	FALSE	0	6	0	6	1	FALSE	ACH-000556
SIHA_CERVIX	CHMP4B--NCOA6	2	0	CHMP4B	1355	chr20:32399464:+	NCOA6	37550	chr20:33285047:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	{Klijn_CCL:Cervix=1},CHMP4B->charged_multivesicular_body_protein_4B,chr20:32399110-32442172:+,NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6	SIHA_CERVIX	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	HEATR3--HERC2P4	1	4	HEATR3	12031	chr16:50120262:+	HERC2P4	21911	chr16:32198426:-	ONLY_REF_SPLICE	YES	77	0	0.06	1	0.0105	0.042	HEATR3->HEAT_repeat_containing_3,chr16:50099852-50140298:+,HERC2P4->chr16:32114566-32199434:-,hect_domain_and_RLD_2_pseudogene_4	SIHA_CERVIX	0.06	1	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	WDR76--DGKA	2	0	WDR76	1130	chr15:44119290:+	DGKA	34851	chr12:56345819:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	WDR76->WD_repeat_domain_76,chr15:44119161-44160617:+,DGKA->chr12:56321103-56347811:+,diacylglycerol_kinase_alpha	SIHA_CERVIX	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	RIPK1--NQO2	1	2	RIPK1	5617	chr6:3081350:+	NQO2	32460	chr6:3017118:+	ONLY_REF_SPLICE	YES	120	155	0.02	0.02	0.0105	0.021	GTEx_v2:{count=2;pct=0.02%;dist=Pancreas=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_REARRANGEMENT:+:[44229],RIPK1->chr6:3064225-3115421:+,receptor_interacting_serine/threonine_kinase_1,NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+	SIHA_CERVIX	0.02	0.02	0.0315	TRUE	0	0	0	1	0	FALSE	ACH-000556
SIHA_CERVIX	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	78	1	0.04	0.0105	0.021	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SIHA_CERVIX	0.04	1	0.0315	TRUE	458	1351	185	561	0	FALSE	ACH-000556
SIHA_CERVIX	AGFG1--TM4SF20	1	1	AGFG1	2531	chr2:228356356:+	TM4SF20	30603	chr2:228235696:-	ONLY_REF_SPLICE	YES	44	0	0.04	1	0.0105	0.0105	LOCAL_INVERSION:+:-:[90157],AGFG1->ArfGAP_with_FG_repeats_1,chr2:228336868-228425930:+,TM4SF20->chr2:228226872-228246711:-,transmembrane_4_L_six_family_member_20	SIHA_CERVIX	0.04	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000556
SIHA_CERVIX	CHMP4B--PIGU	1	1	CHMP4B	1355	chr20:32399464:+	PIGU	14583	chr20:33225789:-	ONLY_REF_SPLICE	YES	1187	191	0	0.01	0.0105	0.0105	{Klijn_CCL:Cervix=1},CHMP4B->charged_multivesicular_body_protein_4B,chr20:32399110-32442172:+,PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U	SIHA_CERVIX	0	0.01	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000556
SIHA_CERVIX	CTC-295J13.3--SPINK6	1	1	CTC-295J13.3	1077	chr5:147618209:+	SPINK6	5454	chr5:147582584:+	ONLY_REF_SPLICE	YES	73	1080	0.03	0	0.0105	0.0105	LOCAL_REARRANGEMENT:+:[23433],CTC-295J13.3->chr5:147618133-147622157:+,SPINK6->chr5:147582357-147594700:+,serine_peptidase_inhibitor,_Kazal_type_6	SIHA_CERVIX	0	0.03	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000556
SIHA_CERVIX	PAWR--RP1-78O14.1	1	1	PAWR	2369	chr12:80083509:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	NO	146	0	0.01	1	0.0105	0.0105	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	SIHA_CERVIX	0.01	1	0.021	FALSE	0	7	0	7	0	FALSE	ACH-000556
SIHA_CERVIX	PVT1--RP11-103H7.1	1	1	PVT1	13955	chr8:129001537:+	RP11-103H7.1	29551	chr8:127499792:+	ONLY_REF_SPLICE	NO	57	0	0.03	1	0.0105	0.0105	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-103H7.1->chr8:127486434-127504841:+	SIHA_CERVIX	0.03	1	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000556
SIHA_CERVIX	TEAD1--PARVA	1	1	TEAD1	4496	chr11:12785981:+	PARVA	32787	chr11:12495292:+	ONLY_REF_SPLICE	YES	172	739	0.01	0	0.0105	0.0105	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	SIHA_CERVIX	0	0.01	0.021	FALSE	3	5	0	10	0	FALSE	ACH-000556
SIHA_CERVIX	TERF2--CYB5B	1	1	TERF2	4649	chr16:69418483:-	CYB5B	20081	chr16:69481053:+	ONLY_REF_SPLICE	YES	221	2146	0.01	0	0.0105	0.0105	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[15954],TERF2->chr16:69389464-69442474:-,telomeric_repeat_binding_factor_2,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	SIHA_CERVIX	0	0.01	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000556
SIHA_CERVIX	TTLL3--PSMA7	1	1	TTLL3	4985	chr3:9855029:+	PSMA7	26252	chr20:60716000:-	ONLY_REF_SPLICE	YES	23	3183	0.08	0	0.0105	0.0105	TTLL3->Oncogene{Bushman},chr3:9849770-9896822:+,tubulin_tyrosine_ligase_like_3,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	SIHA_CERVIX	0	0.08	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000556
PK59_PANCREAS	TIMM23B--LINC00843	99	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8866	0.2418	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PK59_PANCREAS	1	1	1.1284	TRUE	508	994	45	981	0	FALSE	ACH-000205
PK59_PANCREAS	CCNJ--BLNK	76	33	CCNJ	3280	chr10:97810223:+	BLNK	30741	chr10:97951848:-	ONLY_REF_SPLICE	YES	12	0	0.9	1	0.6806	0.2955	CCNJ->chr10:97803151-97820627:+,cyclin_J,BLNK->B-cell_linker,chr10:97951458-98031344:-	PK59_PANCREAS	0.9	1	0.9761	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	MT-TA--MT-TN	82	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7344	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PK59_PANCREAS	1	1	0.7344	FALSE	369	2501	205	193	0	FALSE	ACH-000205
PK59_PANCREAS	MT-TA--MT-TC	77	14	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6896	0.1254	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PK59_PANCREAS	1	1	0.815	FALSE	462	80	0	856	0	FALSE	ACH-000205
PK59_PANCREAS	TIMM23--RP11-464F9.1	59	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5284	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PK59_PANCREAS	1	1	0.5284	TRUE	519	3926	326	965	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND4--MT-ND4L	4	154	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	28	0	0.85	1	0.0358	1.3792	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK59_PANCREAS	0.85	1	1.415	FALSE	344	827	44	306	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND4--MT-ND4L	4	153	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	13	1	0.92	0.99	0.0358	1.3702	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK59_PANCREAS	0.92	0.99	1.406	FALSE	344	826	44	306	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND4--MT-ND4L	3	154	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	27	1	0.85	0.99	0.0269	1.3792	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK59_PANCREAS	0.85	0.99	1.4061	FALSE	344	826	44	306	0	FALSE	ACH-000205
PK59_PANCREAS	MT-CO1--KRT6A	40	0	MT-CO1	1575	chrM:6478:+	KRT6A	5543	chr12:52887041:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3582	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	PK59_PANCREAS	1	1	0.3582	FALSE	7	19	2	8	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND4--MT-ND4L	3	106	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	1	0.96	0.99	0.0269	0.9493	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK59_PANCREAS	0.96	0.99	0.9762	FALSE	344	821	44	306	0	FALSE	ACH-000205
PK59_PANCREAS	MT-TA--MT-TN	14	60	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1254	0.5373	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PK59_PANCREAS	1	1	0.6627	FALSE	369	2501	205	193	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND4--MT-ND4L	3	102	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	78	1	0.57	0.99	0.0269	0.9135	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK59_PANCREAS	0.57	0.99	0.9404	FALSE	344	827	44	306	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND4--MT-ND1	25	3	MT-ND4	2043	chrM:11802:+	MT-ND1	5745	chrM:3673:+	INCL_NON_REF_SPLICE	NO	15162	12782	0	0	0.2239	0.0269	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PK59_PANCREAS	0	0	0.2508	FALSE	51	52	3	16	0	FALSE	ACH-000205
PK59_PANCREAS	RP11-96H19.1--RP11-446N19.1	19	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.1702	0.1164	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PK59_PANCREAS	0.97	1	0.2866	FALSE	407	2205	196	549	0	FALSE	ACH-000205
PK59_PANCREAS	EHMT1--ARRDC1	18	16	EHMT1	7911	chr9:140637980:+	ARRDC1	53812	chr9:140507348:+	ONLY_REF_SPLICE	YES	62	430	0.35	0.07	0.1612	0.1433	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},LOCAL_REARRANGEMENT:+:[3632],EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,ARRDC1->arrestin_domain_containing_1,chr9:140500106-140509812:+	PK59_PANCREAS	0.07	0.35	0.3045	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	MT-TA--MT-TC	19	12	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1702	0.1075	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PK59_PANCREAS	1	1	0.2777	FALSE	462	80	0	856	0	FALSE	ACH-000205
PK59_PANCREAS	MT-TA--MT-TN	22	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.197	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PK59_PANCREAS	1	1	0.197	FALSE	369	2501	205	193	0	FALSE	ACH-000205
PK59_PANCREAS	MT-TA--MT-TN	10	46	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0896	0.412	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PK59_PANCREAS	1	1	0.5016	FALSE	369	2501	205	193	0	FALSE	ACH-000205
PK59_PANCREAS	MT-TA--MT-TN	12	36	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1075	0.3224	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PK59_PANCREAS	1	1	0.4299	FALSE	369	2501	205	193	0	FALSE	ACH-000205
PK59_PANCREAS	MT-TA--MT-TN	16	15	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1433	0.1343	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PK59_PANCREAS	1	1	0.2776	FALSE	369	2501	205	193	0	FALSE	ACH-000205
PK59_PANCREAS	HSP90AB1--MT-RNR2	18	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1612	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PK59_PANCREAS	1	1	0.1612	FALSE	13	9	0	364	0	FALSE	ACH-000205
PK59_PANCREAS	ITPR2--CCDC91	16	5	ITPR2	61046	chr12:26540367:-	CCDC91	86928	chr12:28515371:+	ONLY_REF_SPLICE	YES	19	86	0.53	0.2	0.1433	0.0448	{Klijn_CCL:Pancreas=1},ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	PK59_PANCREAS	0.2	0.53	0.1881	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1522	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	PK59_PANCREAS	1	1	0.1522	TRUE	0	0	0	518	0	FALSE	ACH-000205
PK59_PANCREAS	RP11-96H19.1--RP11-446N19.1	14	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.96	0.92	0.1254	0.0896	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PK59_PANCREAS	0.92	0.96	0.215	FALSE	515	4851	409	746	0	FALSE	ACH-000205
PK59_PANCREAS	NRIP1--AF127936.7	16	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.1433	0.009	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PK59_PANCREAS	0.89	1	0.1523	FALSE	292	1546	117	613	0	FALSE	ACH-000205
PK59_PANCREAS	KIF1B--HLCS	16	0	KIF1B	1074	chr1:10270936:+	HLCS	76178	chr21:38269431:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1433	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},KIF1B->chr1:10270863-10441661:+,kinesin_family_member_1B,HLCS->chr21:38123189-38362536:-,holocarboxylase_synthetase	PK59_PANCREAS	1	1	0.1433	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	MT-ND4--MT-ND4L	6	36	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	876	0	0.05	1	0.0537	0.3224	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK59_PANCREAS	0.05	1	0.3761	FALSE	344	827	44	306	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND4--MT-ND4L	3	45	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	5	1	0.91	0.98	0.0269	0.403	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK59_PANCREAS	0.91	0.98	0.4299	FALSE	344	821	44	306	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND4--MT-ND4L	7	26	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	27	0	0.55	1	0.0627	0.2328	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK59_PANCREAS	0.55	1	0.2955	FALSE	344	826	44	306	0	FALSE	ACH-000205
PK59_PANCREAS	TPT1--H19	13	0	TPT1	1319	chr13:45915187:-	H19	11854	chr11:2017003:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1164	0	TPT1->chr13:45911008-45915505:-,tumor_protein,_translationally-controlled_1,H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-	PK59_PANCREAS	1	1	0.1164	TRUE	0	0	0	4	0	TRUE	ACH-000205
PK59_PANCREAS	MT-TA--MT-TN	9	15	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0806	0.1343	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PK59_PANCREAS	1	1	0.2149	FALSE	369	2501	205	193	0	FALSE	ACH-000205
PK59_PANCREAS	MT-TA--MT-TN	3	39	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0.3493	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PK59_PANCREAS	1	1	0.3762	FALSE	369	2501	205	193	0	FALSE	ACH-000205
PK59_PANCREAS	RP11-123O10.4--GRIP1	11	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0985	0.0537	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PK59_PANCREAS	1	1	0.1522	FALSE	416	2512	207	587	0	FALSE	ACH-000205
PK59_PANCREAS	RP11-680G10.1--GSE1	12	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	24	1	0.35	0.1075	0.009	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PK59_PANCREAS	0.35	1	0.1165	TRUE	465	1949	224	605	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND4--MT-ND4L	3	36	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	59	0	0.4	1	0.0269	0.3224	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK59_PANCREAS	0.4	1	0.3493	FALSE	344	827	44	306	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND6--MT-TE	11	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0985	0.009	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PK59_PANCREAS	1	1	0.1075	FALSE	499	1288	110	792	0	FALSE	ACH-000205
PK59_PANCREAS	MT-TA--MT-TN	3	33	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0.2955	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PK59_PANCREAS	1	1	0.3224	FALSE	369	2501	205	193	0	FALSE	ACH-000205
PK59_PANCREAS	SLC1A5--MT-ND4L	11	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1366	0	0.01	1	0.0985	0.009	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK59_PANCREAS	0.01	1	0.1075	FALSE	0	0	0	189	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND6--MT-TE	10	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0896	0.009	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PK59_PANCREAS	1	1	0.0986	FALSE	499	1288	110	792	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND6--MT-TE	9	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0806	0.0358	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PK59_PANCREAS	0.93	1	0.1164	FALSE	499	1288	110	792	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND4--MT-ND4L	4	22	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	1	0.9	0.96	0.0358	0.197	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK59_PANCREAS	0.9	0.96	0.2328	FALSE	344	821	44	306	0	FALSE	ACH-000205
PK59_PANCREAS	MT-TA--MT-TC	5	17	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	0.1522	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PK59_PANCREAS	1	1	0.197	FALSE	462	80	0	856	0	FALSE	ACH-000205
PK59_PANCREAS	MT-TA--MT-TN	9	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0806	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PK59_PANCREAS	1	1	0.0806	FALSE	369	2501	205	193	0	FALSE	ACH-000205
PK59_PANCREAS	NIPA2--POLA1	9	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0806	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	PK59_PANCREAS	1	1	0.0806	TRUE	46	1352	75	139	0	FALSE	ACH-000205
PK59_PANCREAS	CTD-3116E22.6--ZNF274	8	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0716	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	PK59_PANCREAS	1	1	0.0716	TRUE	0	0	0	13	0	TRUE	ACH-000205
PK59_PANCREAS	MT-TA--MT-TN	8	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0716	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PK59_PANCREAS	1	1	0.0716	FALSE	369	2501	205	193	0	FALSE	ACH-000205
PK59_PANCREAS	HSPA1B--UBB	6	4	HSPA1B	3019	chr6:31797530:+	UBB	7625	chr17:16285216:+	INCL_NON_REF_SPLICE	YES	2968	197	0	0.05	0.0537	0.0358	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.14%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Whole_Blood=1},HSPA1B->chr6:31795512-31798031:+,heat_shock_protein_family_A_(Hsp70)_member_1B,UBB->chr17:16284112-16286059:+,ubiquitin_B	PK59_PANCREAS	0	0.05	0.0895	FALSE	4	0	0	2	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND4--MT-ND1	6	3	MT-ND4	1538	chrM:11297:+	MT-ND1	5585	chrM:3513:+	INCL_NON_REF_SPLICE	YES	20695	7976	0	0	0.0537	0.0269	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	PK59_PANCREAS	0	0	0.0806	FALSE	51	52	3	16	0	FALSE	ACH-000205
PK59_PANCREAS	RP11-96H19.1--RP11-446N19.1	3	15	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0.1343	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PK59_PANCREAS	1	1	0.1612	FALSE	192	492	57	212	0	FALSE	ACH-000205
PK59_PANCREAS	CCNJ--BLNK	6	2	CCNJ	2069	chr10:97804219:+	BLNK	30741	chr10:97951848:-	ONLY_REF_SPLICE	YES	16	0	0.33	1	0.0537	0.0179	CCNJ->chr10:97803151-97820627:+,cyclin_J,BLNK->B-cell_linker,chr10:97951458-98031344:-	PK59_PANCREAS	0.33	1	0.0716	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PK59_PANCREAS	1	1	0.0537	FALSE	462	80	0	856	0	FALSE	ACH-000205
PK59_PANCREAS	ZNF654--HMGB2	6	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	PK59_PANCREAS	1	1	0.0537	TRUE	0	0	0	518	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND4--MT-ND4L	3	11	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	59	0	0.19	1	0.0269	0.0985	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK59_PANCREAS	0.19	1	0.1254	FALSE	344	827	44	306	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND4--MT-ND4L	5	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.86	0.0448	0.009	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK59_PANCREAS	0.86	1	0.0538	FALSE	344	821	44	306	0	FALSE	ACH-000205
PK59_PANCREAS	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PK59_PANCREAS	1	1	0.0448	FALSE	13	9	0	364	0	FALSE	ACH-000205
PK59_PANCREAS	MT-CO1--KRT6A	5	0	MT-CO1	1591	chrM:6494:+	KRT6A	5561	chr12:52887023:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	PK59_PANCREAS	1	1	0.0448	FALSE	7	19	2	8	0	FALSE	ACH-000205
PK59_PANCREAS	NPM1P24--SET	5	0	NPM1P24	1533	chr10:74677760:-	SET	12307	chr9:131456202:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0448	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PK59_PANCREAS	1	1	0.0448	TRUE	0	0	0	434	0	FALSE	ACH-000205
PK59_PANCREAS	MT-TA--MT-TC	3	7	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0.0627	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PK59_PANCREAS	1	1	0.0896	FALSE	462	80	0	856	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND6--MT-TE	4	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0.009	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PK59_PANCREAS	1	1	0.0448	FALSE	499	1288	110	792	0	FALSE	ACH-000205
PK59_PANCREAS	C17orf76-AS1--CTD-2354A18.1	4	0	C17orf76-AS1	1593	chr17:16342728:+	CTD-2354A18.1	16095	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	C17orf76-AS1->chr17:16342136-16381992:+,CTD-2354A18.1->chr18:70992176-71017113:+	PK59_PANCREAS	1	1	0.0358	TRUE	0	0	0	3	0	TRUE	ACH-000205
PK59_PANCREAS	RP11-444D3.1--SOX5	4	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	PK59_PANCREAS	1	1	0.0358	TRUE	477	1352	189	275	0	FALSE	ACH-000205
PK59_PANCREAS	VTI1A--RP11-57H14.3	4	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0358	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	PK59_PANCREAS	1	1	0.0358	FALSE	272	151	14	158	0	FALSE	ACH-000205
PK59_PANCREAS	ZNF664--GTF2H3	3	4	ZNF664	4564	chr12:124472685:+	GTF2H3	20780	chr12:124130002:+	ONLY_REF_SPLICE	YES	217	122	0.03	0.05	0.0269	0.0358	ZNF664->chr12:124456392-124499986:+,zinc_finger_protein_664,GTF2H3->chr12:124118375-124147153:+,general_transcription_factor_IIH_subunit_3	PK59_PANCREAS	0.03	0.05	0.0627	TRUE	0	0	0	1	0	FALSE	ACH-000205
PK59_PANCREAS	AC002066.1--AC073130.1	3	3	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	5	0	0.55	1	0.0269	0.0269	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	PK59_PANCREAS	0.55	1	0.0538	FALSE	0	3	0	33	0	FALSE	ACH-000205
PK59_PANCREAS	HSPA1B--UBB	3	2	HSPA1B	3019	chr6:31797530:+	UBB	7770	chr17:16285361:+	INCL_NON_REF_SPLICE	YES	2968	3310	0	0	0.0269	0.0179	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.14%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Whole_Blood=1},HSPA1B->chr6:31795512-31798031:+,heat_shock_protein_family_A_(Hsp70)_member_1B,UBB->chr17:16284112-16286059:+,ubiquitin_B	PK59_PANCREAS	0	0	0.0448	FALSE	4	0	0	2	0	FALSE	ACH-000205
PK59_PANCREAS	ITPR2--CCDC91	3	2	ITPR2	61046	chr12:26540367:-	CCDC91	88006	chr12:28544237:+	ONLY_REF_SPLICE	YES	19	103	0.21	0.05	0.0269	0.0179	{Klijn_CCL:Pancreas=1},ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	PK59_PANCREAS	0.05	0.21	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.85	0.009	0.0896	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PK59_PANCREAS	0.85	1	0.0986	FALSE	467	2173	244	435	0	FALSE	ACH-000205
PK59_PANCREAS	DANCR--CTD-2354A18.1	3	1	DANCR	1530	chr4:53579126:+	CTD-2354A18.1	10186	chr18:70999698:+	ONLY_REF_SPLICE	YES	203	500	0.02	0.01	0.0269	0.009	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,CTD-2354A18.1->chr18:70992176-71017113:+	PK59_PANCREAS	0.01	0.02	0.0359	FALSE	0	0	0	5	0	FALSE	ACH-000205
PK59_PANCREAS	NRIP1--AF127936.7	3	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.27	1	0.0269	0.009	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PK59_PANCREAS	0.27	1	0.0359	FALSE	164	806	69	479	0	FALSE	ACH-000205
PK59_PANCREAS	RP11-467H10.2--TCF7L2	3	1	RP11-467H10.2	1058	chr7:76673095:+	TCF7L2	13405	chr10:114900943:+	ONLY_REF_SPLICE	YES	0	67	1	0.06	0.0269	0.009	RP11-467H10.2->chr7:76673038-76827943:+,TCF7L2->Oncogene{Bushman},chr10:114710009-114927437:+,transcription_factor_7_like_2	PK59_PANCREAS	0.06	1	0.0359	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	EIF1--RPL5	3	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	PK59_PANCREAS	1	1	0.0269	TRUE	0	0	0	39	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND4--MT-ND4L	3	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PK59_PANCREAS	1	1	0.0269	FALSE	344	821	44	306	0	FALSE	ACH-000205
PK59_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PK59_PANCREAS	1	1	0.0269	FALSE	499	1288	110	792	0	FALSE	ACH-000205
PK59_PANCREAS	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0269	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PK59_PANCREAS	1	1	0.0269	TRUE	0	0	0	434	0	FALSE	ACH-000205
PK59_PANCREAS	EHMT1--ARRDC1	1	5	EHMT1	7911	chr9:140637980:+	ARRDC1	54376	chr9:140507912:+	ONLY_REF_SPLICE	YES	62	421	0.09	0.01	0.009	0.0448	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},LOCAL_REARRANGEMENT:+:[3632],EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,ARRDC1->arrestin_domain_containing_1,chr9:140500106-140509812:+	PK59_PANCREAS	0.01	0.09	0.0538	FALSE	0	0	0	1	0	FALSE	ACH-000205
PK59_PANCREAS	RP11-114H23.1--RP11-114H23.2	2	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0.009	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	PK59_PANCREAS	1	1	0.0269	FALSE	81	155	12	160	0	FALSE	ACH-000205
PK59_PANCREAS	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0.009	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PK59_PANCREAS	1	1	0.0269	FALSE	93	270	15	244	0	FALSE	ACH-000205
PK59_PANCREAS	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.23	0.0179	0.009	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PK59_PANCREAS	0.23	1	0.0269	TRUE	458	1351	185	561	0	FALSE	ACH-000205
PK59_PANCREAS	TXNRD1--CHST11	2	1	TXNRD1	27532	chr12:104733051:+	CHST11	38653	chr12:104995684:+	ONLY_REF_SPLICE	YES	733	59	0	0.05	0.0179	0.009	GTEx_FI:{Brain=[count:3=pct:0.5]},{Klijn_CCL:Lung=1},TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+	PK59_PANCREAS	0	0.05	0.0269	FALSE	0	2	1	13	2	FALSE	ACH-000205
PK59_PANCREAS	EP300--RANGAP1	2	0	EP300	32070	chr22:41569788:+	RANGAP1	43685	chr22:41677086:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	LOCAL_INVERSION:+:-:[65534],EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+,RANGAP1->Ran_GTPase_activating_protein_1,chr22:41641615-41682255:-	PK59_PANCREAS	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	PCBP2--C12orf10	2	0	PCBP2	7833	chr12:53849785:+	C12orf10	30096	chr12:53700464:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},PCBP2->chr12:53835525-53874946:+,poly(rC)_binding_protein_2,C12orf10->chr12:53693470-53700961:+,chromosome_12_open_reading_frame_10	PK59_PANCREAS	1	1	0.0179	TRUE	0	1	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	PSMD4--SNHG12	2	0	PSMD4	5133	chr1:151236504:+	SNHG12	14587	chr1:28906493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	PSMD4->chr1:151227179-151239955:+,proteasome_26S_subunit,_non-ATPase_4,SNHG12->chr1:28905050-28909495:-,small_nucleolar_RNA_host_gene_12	PK59_PANCREAS	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	PVT1--FAM49B	2	0	PVT1	1202	chr8:128806980:+	FAM49B	42030	chr8:130883742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	PK59_PANCREAS	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	RP11-114H23.1--RP11-114H23.2	2	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12608	chr12:76088550:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	PK59_PANCREAS	1	1	0.0179	FALSE	81	155	12	160	0	FALSE	ACH-000205
PK59_PANCREAS	RP5-1158E12.3--CCDC91	2	0	RP5-1158E12.3	3112	chrX:45708809:-	CCDC91	23294	chr12:28458582:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	RP5-1158E12.3->chrX:45707328-45710920:-,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	PK59_PANCREAS	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	RPSAP52--HMGA2	2	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	PK59_PANCREAS	1	1	0.0179	FALSE	0	59	0	125	0	FALSE	ACH-000205
PK59_PANCREAS	VPS36--RB1	2	0	VPS36	7499	chr13:53007797:-	RB1	40869	chr13:49027129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	VPS36->chr13:52986737-53024763:-,vacuolar_protein_sorting_36_homolog,RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1	PK59_PANCREAS	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000205
PK59_PANCREAS	EHF--TSG101	1	1	EHF	10074	chr11:34673352:+	TSG101	33738	chr11:18490765:-	ONLY_REF_SPLICE	YES	67	5	0.03	0.29	0.009	0.009	EHF->ETS_homologous_factor,chr11:34642640-34682604:+,TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101	PK59_PANCREAS	0.03	0.29	0.018	TRUE	0	0	0	2	0	FALSE	ACH-000205
PK59_PANCREAS	PI4KA--SERPIND1	1	1	PI4KA	20246	chr22:21147481:-	SERPIND1	55593	chr22:21133585:+	ONLY_REF_SPLICE	YES	28	0	0.07	1	0.009	0.009	NEIGHBORS_OVERLAP:-:+:[13841],PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha,SERPIND1->chr22:21128167-21142008:+,serpin_family_D_member_1	PK59_PANCREAS	0.07	1	0.018	FALSE	0	1	0	1	0	FALSE	ACH-000205
SNU520_STOMACH	TIMM23B--LINC00843	140	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3136	0.319	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU520_STOMACH	1	1	1.6326	TRUE	508	994	45	981	0	FALSE	ACH-000908
SNU520_STOMACH	TIMM23--RP11-464F9.1	89	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	298	3	0.24	0.97	0.8351	0.0375	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU520_STOMACH	0.24	0.97	0.8726	TRUE	519	3926	326	965	0	FALSE	ACH-000908
SNU520_STOMACH	MT-ND6--MT-TE	38	8	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3566	0.0751	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU520_STOMACH	1	1	0.4317	FALSE	499	1288	110	792	0	FALSE	ACH-000908
SNU520_STOMACH	OR51S1--TP53I11	32	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3003	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU520_STOMACH	1	1	0.3003	TRUE	402	216	10	229	0	FALSE	ACH-000908
SNU520_STOMACH	NIPA2--POLA1	26	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.244	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SNU520_STOMACH	1	1	0.244	TRUE	46	1352	75	139	0	FALSE	ACH-000908
SNU520_STOMACH	MT-ND6--MT-TE	18	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1689	0.0657	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU520_STOMACH	1	1	0.2346	FALSE	499	1288	110	792	0	FALSE	ACH-000908
SNU520_STOMACH	SAMD5--SASH1	18	2	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	22	3	0.48	0.87	0.1689	0.0188	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SNU520_STOMACH	0.48	0.87	0.1877	TRUE	53	396	64	110	0	FALSE	ACH-000908
SNU520_STOMACH	MT-ND6--MT-TE	10	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0938	0.1032	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU520_STOMACH	0.95	1	0.197	FALSE	499	1288	110	792	0	FALSE	ACH-000908
SNU520_STOMACH	NRIP1--AF127936.7	11	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1032	0.0281	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU520_STOMACH	1	1	0.1313	FALSE	292	1546	117	613	0	FALSE	ACH-000908
SNU520_STOMACH	NRIP1--AF127936.7	9	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.48	1	0.0844	0.0563	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU520_STOMACH	0.48	1	0.1407	FALSE	164	806	69	479	0	FALSE	ACH-000908
SNU520_STOMACH	MUC6--MT-ND4	9	3	MUC6	16688	chr11:1017394:-	MT-ND4	23888	chrM:11146:+	INCL_NON_REF_SPLICE	YES	9599	9458	0	0	0.0844	0.0281	MUC6->Oncogene{Bushman},chr11:1012821-1036706:-,mucin_6,_oligomeric_mucus/gel-forming,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SNU520_STOMACH	0	0	0.1125	FALSE	0	0	0	2	0	FALSE	ACH-000908
SNU520_STOMACH	MUC6--MT-ND4	8	5	MUC6	17195	chr11:1016887:-	MT-ND4	23888	chrM:11146:+	INCL_NON_REF_SPLICE	YES	7889	9458	0	0	0.0751	0.0469	MUC6->Oncogene{Bushman},chr11:1012821-1036706:-,mucin_6,_oligomeric_mucus/gel-forming,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SNU520_STOMACH	0	0	0.122	FALSE	0	0	0	2	0	FALSE	ACH-000908
SNU520_STOMACH	MT-ND6--MT-TE	3	22	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0281	0.2064	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU520_STOMACH	0.96	1	0.2345	FALSE	499	1288	110	792	0	FALSE	ACH-000908
SNU520_STOMACH	MT-ND6--MT-TE	3	21	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0.197	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU520_STOMACH	1	1	0.2251	FALSE	499	1288	110	792	0	FALSE	ACH-000908
SNU520_STOMACH	MT-ND6--MT-TE	3	15	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.0281	0.1407	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU520_STOMACH	0.9	1	0.1688	FALSE	499	1288	110	792	0	FALSE	ACH-000908
SNU520_STOMACH	MUC6--MT-ND4	5	6	MUC6	17179	chr11:1016903:-	MT-ND4	23871	chrM:11129:+	INCL_NON_REF_SPLICE	YES	8369	9357	0	0	0.0469	0.0563	MUC6->Oncogene{Bushman},chr11:1012821-1036706:-,mucin_6,_oligomeric_mucus/gel-forming,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SNU520_STOMACH	0	0	0.1032	FALSE	0	0	0	2	0	FALSE	ACH-000908
SNU520_STOMACH	NRIP1--AF127936.7	5	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.5	1	0.0469	0.0469	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU520_STOMACH	0.5	1	0.0938	FALSE	125	705	46	456	0	FALSE	ACH-000908
SNU520_STOMACH	MT-ND6--MT-TE	5	1	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0469	0.0094	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU520_STOMACH	1	1	0.0563	FALSE	499	1288	110	792	0	FALSE	ACH-000908
SNU520_STOMACH	SCARB1--UBC	5	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	28	37	0.18	0.14	0.0469	0.0094	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU520_STOMACH	0.14	0.18	0.0563	TRUE	55	66	6	101	0	FALSE	ACH-000908
SNU520_STOMACH	ANKRD11--EXD3	5	0	ANKRD11	1317	chr16:89556653:-	EXD3	66202	chr9:140204152:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0469	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3	SNU520_STOMACH	1	1	0.0469	TRUE	0	0	0	1	0	TRUE	ACH-000908
SNU520_STOMACH	MT-ND6--MT-TE	3	7	MT-ND6	1149	chrM:14525:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0.0657	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU520_STOMACH	1	1	0.0938	FALSE	499	1288	110	792	0	FALSE	ACH-000908
SNU520_STOMACH	MUC6--MT-ND4	4	3	MUC6	17036	chr11:1017046:-	MT-ND4	23828	chrM:11086:+	INCL_NON_REF_SPLICE	YES	8418	8711	0	0	0.0375	0.0281	MUC6->Oncogene{Bushman},chr11:1012821-1036706:-,mucin_6,_oligomeric_mucus/gel-forming,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SNU520_STOMACH	0	0	0.0656	FALSE	0	0	0	2	0	FALSE	ACH-000908
SNU520_STOMACH	MT-ND6--MT-TE	3	6	MT-ND6	1198	chrM:14476:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0281	0.0563	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU520_STOMACH	0.9	1	0.0844	FALSE	499	1288	110	792	0	FALSE	ACH-000908
SNU520_STOMACH	MUC6--MT-ND4	3	2	MUC6	16181	chr11:1017901:-	MT-ND4	23616	chrM:10874:+	INCL_NON_REF_SPLICE	YES	6089	812	0	0.01	0.0281	0.0188	MUC6->Oncogene{Bushman},chr11:1012821-1036706:-,mucin_6,_oligomeric_mucus/gel-forming,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SNU520_STOMACH	0	0.01	0.0469	FALSE	0	0	0	2	0	FALSE	ACH-000908
SNU520_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1002	chrM:14672:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0281	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU520_STOMACH	1	1	0.0281	FALSE	499	1288	110	792	0	FALSE	ACH-000908
SNU520_STOMACH	ACBD6--ATP1A1	2	0	ACBD6	7351	chr1:180366651:-	ATP1A1	21361	chr1:116926636:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ACBD6->acyl-CoA_binding_domain_containing_6,chr1:180244515-180472089:-,ATP1A1->ATPase_Na+/K+_transporting_subunit_alpha_1,chr1:116915290-116952883:+	SNU520_STOMACH	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000908
SNU520_STOMACH	ARMC4P1--RP11-748L13.2	2	0	ARMC4P1	5853	chr10:27577753:+	RP11-748L13.2	13614	chr10:27620495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	LOCAL_INVERSION:+:-:[42533],ARMC4P1->armadillo_repeat_containing_4_pseudogene_1,chr10:27547691-27577753:+,RP11-748L13.2->chr10:27620286-27630181:-	SNU520_STOMACH	1	1	0.0188	TRUE	1	34	11	8	34	TRUE	ACH-000908
SNU520_STOMACH	ONECUT3--CIRBP	2	0	ONECUT3	3482	chr19:1754853:+	CIRBP	21395	chr19:1270927:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ONECUT3->chr19:1752372-1780987:+,one_cut_homeobox_3,CIRBP->Oncogene{Bushman},chr19:1259384-1274879:+,cold_inducible_RNA_binding_protein	SNU520_STOMACH	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000908
SNU520_STOMACH	TIMM23B--LINC00843	1	3	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	3	1	0.57	0.0094	0.0281	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU520_STOMACH	0.57	1	0.0375	TRUE	62	24	1	171	0	FALSE	ACH-000908
SNU520_STOMACH	NCOR2--UBC	1	2	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	94	37	0.03	0.07	0.0094	0.0188	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU520_STOMACH	0.03	0.07	0.0282	TRUE	52	148	13	33	0	FALSE	ACH-000908
SNU520_STOMACH	RAB1A--MOB1A	1	1	RAB1A	4967	chr2:65325105:-	MOB1A	15740	chr2:74399879:-	ONLY_REF_SPLICE	YES	956	244	0	0.01	0.0094	0.0094	RAB1A->Oncogene{Bushman},RAB1A,_member_RAS_oncogene_family,chr2:65297835-65357240:-,MOB1A->MOB_kinase_activator_1A,chr2:74379655-74406025:-	SNU520_STOMACH	0	0.01	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000908
TTC642_SOFT_TISSUE	TIMM23B--LINC00843	73	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2179	0.3003	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TTC642_SOFT_TISSUE	1	1	1.5182	TRUE	508	994	45	981	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TN	59	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9844	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC642_SOFT_TISSUE	1	1	0.9844	FALSE	369	2501	205	193	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	AP003900.6--AP000345.1	55	0	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.9176	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	TTC642_SOFT_TISSUE	1	1	0.9176	TRUE	4	17	0	31	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	TIMM23--RP11-464F9.1	48	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	215	3	0.2	0.95	0.8008	0.0834	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TTC642_SOFT_TISSUE	0.2	0.95	0.8842	TRUE	519	3926	326	965	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TC	29	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4838	0.0334	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TTC642_SOFT_TISSUE	1	1	0.5172	FALSE	462	80	0	856	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TN	18	46	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3003	0.7675	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC642_SOFT_TISSUE	1	1	1.0678	FALSE	369	2501	205	193	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TN	20	25	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3337	0.4171	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC642_SOFT_TISSUE	1	1	0.7508	FALSE	369	2501	205	193	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TN	16	35	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2669	0.5839	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC642_SOFT_TISSUE	1	1	0.8508	FALSE	369	2501	205	193	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TN	9	61	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.1502	1.0177	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC642_SOFT_TISSUE	1	1	1.1679	FALSE	369	2501	205	193	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ND6--MT-TE	20	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3337	0.1001	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC642_SOFT_TISSUE	1	1	0.4338	FALSE	499	1288	110	792	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TN	14	30	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2336	0.5005	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC642_SOFT_TISSUE	1	1	0.7341	FALSE	369	2501	205	193	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ND6--MT-TE	20	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3337	0.0334	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC642_SOFT_TISSUE	1	1	0.3671	FALSE	499	1288	110	792	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TN	17	14	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2836	0.2336	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC642_SOFT_TISSUE	1	1	0.5172	FALSE	369	2501	205	193	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	NPM1P24--SET	17	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2836	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TTC642_SOFT_TISSUE	1	1	0.2836	TRUE	0	0	0	434	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	NPM1P24--SET	17	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2836	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TTC642_SOFT_TISSUE	1	1	0.2836	TRUE	0	0	0	434	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ND6--MT-TE	16	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2669	0.0167	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC642_SOFT_TISSUE	1	1	0.2836	FALSE	499	1288	110	792	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	AP003900.6--AP000345.1	14	4	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	2	0	0.9	1	0.2336	0.0667	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	TTC642_SOFT_TISSUE	0.9	1	0.3003	TRUE	0	8	0	37	1	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TN	14	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2336	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC642_SOFT_TISSUE	1	1	0.2336	FALSE	369	2501	205	193	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TN	4	39	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0.6507	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC642_SOFT_TISSUE	1	1	0.7174	FALSE	369	2501	205	193	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TN	13	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2169	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC642_SOFT_TISSUE	1	1	0.2169	FALSE	369	2501	205	193	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	NPM1P24--SET	12	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2002	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TTC642_SOFT_TISSUE	1	1	0.2002	TRUE	0	0	0	434	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TN	3	34	MT-TA	1051	chrM:5605:-	MT-TN	4091	chrM:5708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0.5673	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC642_SOFT_TISSUE	1	1	0.6174	FALSE	369	2501	205	193	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	RP11-680G10.1--GSE1	10	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	26	1	0.35	0.1668	0.0667	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TTC642_SOFT_TISSUE	0.35	1	0.2335	TRUE	458	1351	185	561	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	RP1-34H18.1--NAV3	9	4	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	52	1	0.2	0.1502	0.0667	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	TTC642_SOFT_TISSUE	0.2	1	0.2169	TRUE	254	575	65	124	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TC	8	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1335	0.0334	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TTC642_SOFT_TISSUE	1	1	0.1669	FALSE	462	80	0	856	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ND6--MT-TE	4	14	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0.2336	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC642_SOFT_TISSUE	1	1	0.3003	FALSE	499	1288	110	792	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ND6--MT-TE	5	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0.1502	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC642_SOFT_TISSUE	1	1	0.2336	FALSE	499	1288	110	792	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1168	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC642_SOFT_TISSUE	1	1	0.1168	FALSE	499	1288	110	792	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ND6--MT-TE	5	7	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0834	0.1168	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC642_SOFT_TISSUE	0.92	1	0.2002	FALSE	499	1288	110	792	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TC	6	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1001	0.0334	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TTC642_SOFT_TISSUE	1	1	0.1335	FALSE	462	80	0	856	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1001	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TTC642_SOFT_TISSUE	1	1	0.1001	FALSE	183	104	9	328	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ND6--MT-TE	4	5	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0.0834	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC642_SOFT_TISSUE	1	1	0.1501	FALSE	499	1288	110	792	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TTC642_SOFT_TISSUE	1	1	0.0834	FALSE	63	17	1	58	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TTC642_SOFT_TISSUE	1	1	0.0834	FALSE	63	17	1	58	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ND6--MT-TE	3	8	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0.1335	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC642_SOFT_TISSUE	1	1	0.1836	FALSE	499	1288	110	792	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC642_SOFT_TISSUE	1	1	0.0834	FALSE	499	1288	110	792	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	AP003900.6--AP000345.1	4	3	AP003900.6	2187	chr21:11172043:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	3	0	0.7	1	0.0667	0.0501	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	TTC642_SOFT_TISSUE	0.7	1	0.1168	TRUE	1	2	0	16	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC642_SOFT_TISSUE	1	1	0.0667	FALSE	499	1288	110	792	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TTC642_SOFT_TISSUE	1	1	0.0667	FALSE	462	80	0	856	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC642_SOFT_TISSUE	1	1	0.0667	FALSE	369	2501	205	193	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0667	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC642_SOFT_TISSUE	1	1	0.0667	FALSE	369	2501	205	193	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	RP11-166D19.1--DNM3OS	4	0	RP11-166D19.1	5868	chr11:121971082:-	DNM3OS	18442	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0667	0	GTEx_FI:{Ovary=[count:4=pct:7.5],Blood_Vessel=[count:3=pct:0.8],Thyroid=[count:2=pct:1.1],Uterus=[count:1=pct:2.3],Esophagus=[count:1=pct:0.2]},RP11-166D19.1->chr11:121899063-121987031:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	TTC642_SOFT_TISSUE	1	1	0.0667	TRUE	11	20	1	11	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	SAMD5--SASH1	4	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0667	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	TTC642_SOFT_TISSUE	1	1	0.0667	TRUE	53	396	64	110	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	CTC-340A15.2--CTC-535M15.2	3	3	CTC-340A15.2	25965	chr5:164434418:+	CTC-535M15.2	32673	chr5:165204982:+	ONLY_REF_SPLICE	YES	22	0	0.21	1	0.0501	0.0501	CTC-340A15.2->chr5:163723702-164598649:+,CTC-535M15.2->chr5:164776036-165205694:+	TTC642_SOFT_TISSUE	0.21	1	0.1002	TRUE	0	0	0	2	0	TRUE	ACH-001212
TTC642_SOFT_TISSUE	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	40	1	0.11	0.0501	0.0334	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TTC642_SOFT_TISSUE	0.11	1	0.0835	TRUE	465	1949	224	605	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TTC642_SOFT_TISSUE	1	1	0.0501	FALSE	183	104	9	328	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TTC642_SOFT_TISSUE	1	1	0.0501	FALSE	183	104	9	328	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TTC642_SOFT_TISSUE	1	1	0.0501	FALSE	63	17	1	58	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TTC642_SOFT_TISSUE	1	1	0.0501	FALSE	63	17	1	58	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	MT-TA--MT-TN	3	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC642_SOFT_TISSUE	1	1	0.0501	FALSE	369	2501	205	193	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	VIM--MT-ATP6	3	0	VIM	2149	chr10:17271406:+	MT-ATP6	12335	chrM:8657:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	VIM->chr10:17270258-17279592:+,vimentin,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TTC642_SOFT_TISSUE	1	1	0.0501	FALSE	0	0	0	2	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	VIM--MT-ATP6	3	0	VIM	2101	chr10:17271358:+	MT-ATP6	12159	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	VIM->chr10:17270258-17279592:+,vimentin,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TTC642_SOFT_TISSUE	1	1	0.0501	FALSE	0	0	0	2	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	CTC-340A15.2--CTC-535M15.2	2	0	CTC-340A15.2	1501	chr5:163724202:+	CTC-535M15.2	32673	chr5:165204982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	CTC-340A15.2->chr5:163723702-164598649:+,CTC-535M15.2->chr5:164776036-165205694:+	TTC642_SOFT_TISSUE	1	1	0.0334	TRUE	0	0	0	3	0	TRUE	ACH-001212
TTC642_SOFT_TISSUE	CTDSP1--DNM3OS	2	0	CTDSP1	5150	chr2:219267128:+	DNM3OS	12044	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	GTEx_FI:{Blood_Vessel=[count:34=pct:9.2],Ovary=[count:11=pct:20.8],Colon=[count:9=pct:4.7],Esophagus=[count:5=pct:1.2],Adipose_Tissue=[count:4=pct:1.3],Breast=[count:4=pct:3.6],Thyroid=[count:4=pct:2.3],Spleen=[count:3=pct:2.7],Lung=[count:3=pct:1.8],Vagina=[count:2=pct:3.6],Uterus=[count:2=pct:4.7],Skin=[count:2=pct:0.6],Prostate=[count:2=pct:3.3],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Testis=[count:1=pct:1.0]},CTDSP1->CTD_small_phosphatase_1,chr2:219262979-219270664:+,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	TTC642_SOFT_TISSUE	1	1	0.0334	TRUE	71	70	15	9	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	SNX8--MAD1L1	2	0	SNX8	3400	chr7:2353963:-	MAD1L1	56914	chr7:1938026:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0	NEIGHBORS[18527],SNX8->chr7:2291405-2393953:-,sorting_nexin_8,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	TTC642_SOFT_TISSUE	1	1	0.0334	FALSE	0	0	0	2	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	CTC-340A15.2--CTC-535M15.2	1	3	CTC-340A15.2	20516	chr5:164149813:+	CTC-535M15.2	32673	chr5:165204982:+	ONLY_REF_SPLICE	NO	33	0	0.11	1	0.0167	0.0501	CTC-340A15.2->chr5:163723702-164598649:+,CTC-535M15.2->chr5:164776036-165205694:+	TTC642_SOFT_TISSUE	0.11	1	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-001212
TTC642_SOFT_TISSUE	RSU1--CUBN	1	1	RSU1	1556	chr10:16858972:-	CUBN	76930	chr10:16930565:-	ONLY_REF_SPLICE	YES	2079	490	0	0	0.0167	0.0167	LOCAL_REARRANGEMENT:-:[6436],RSU1->Ras_suppressor_protein_1,chr10:16632610-16859527:-,CUBN->Oncogene{Bushman},chr10:16865963-17171830:-,cubilin	TTC642_SOFT_TISSUE	0	0	0.0334	FALSE	0	0	0	1	0	FALSE	ACH-001212
TTC642_SOFT_TISSUE	ZNRD1-AS1--HCN1	1	1	ZNRD1-AS1	11211	chr6:29989444:-	HCN1	37182	chr5:45303941:-	ONLY_REF_SPLICE	YES	11	122	0.15	0.02	0.0167	0.0167	ZNRD1-AS1->chr6:29968788-30029417:-,HCN1->chr5:45259349-45696253:-,hyperpolarization_activated_cyclic_nucleotide_gated_potassium_channel_1	TTC642_SOFT_TISSUE	0.02	0.15	0.0334	TRUE	0	0	0	1	0	FALSE	ACH-001212
SNU182_LIVER	USP43--AHSP	157	110	USP43	2439	chr17:9549453:+	AHSP	23400	chr16:31539457:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.376	0.9641	USP43->chr17:9548015-9633008:+,ubiquitin_specific_peptidase_43,AHSP->alpha_hemoglobin_stabilizing_protein,chr16:31539185-31540124:+	SNU182_LIVER	1	1	2.3401	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	TIMM23B--LINC00843	149	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3059	0.2717	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU182_LIVER	1	1	1.5776	TRUE	508	994	45	981	0	FALSE	ACH-000483
SNU182_LIVER	USP43--AHSP	113	104	USP43	2439	chr17:9549453:+	AHSP	23404	chr16:31539461:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9903	0.9115	USP43->chr17:9548015-9633008:+,ubiquitin_specific_peptidase_43,AHSP->alpha_hemoglobin_stabilizing_protein,chr16:31539185-31540124:+	SNU182_LIVER	1	1	1.9018	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	TIMM23--RP11-464F9.1	79	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	255	2	0.24	0.98	0.6924	0.0175	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU182_LIVER	0.24	0.98	0.7099	TRUE	519	3926	326	965	0	FALSE	ACH-000483
SNU182_LIVER	GNB1L--SEPT5	49	15	GNB1L	5537	chr22:19794182:-	SEPT5	20203	chr22:19707125:+	ONLY_REF_SPLICE	YES	95	258	0.4	0.2	0.4294	0.1315	{Klijn_CCL:Liver=1},LOCAL_INVERSION:-:+:[58452],GNB1L->G_protein_subunit_beta_1_like,chr22:19770747-19842462:-,SEPT5->Oncogene{Bushman},chr22:19701987-19712295:+,septin_5	SNU182_LIVER	0.2	0.4	0.5609	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	RNF115--ANKRD34A	41	17	RNF115	1306	chr1:145611341:+	ANKRD34A	24014	chr1:145472122:+	ONLY_REF_SPLICE	YES	84	1	0.41	0.98	0.3593	0.149	RNF115->chr1:145611036-145696218:+,ring_finger_protein_115,ANKRD34A->ankyrin_repeat_domain_34A,chr1:145470508-145475646:+	SNU182_LIVER	0.41	0.98	0.5083	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	MAVS--CDC25B	45	0	MAVS	1064	chr20:3827550:+	CDC25B	14051	chr20:3767745:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3944	0	LOCAL_REARRANGEMENT:+:[40725],MAVS->chr20:3827487-3849280:+,mitochondrial_antiviral_signaling_protein,CDC25B->Oncogene{Bushman},cell_division_cycle_25B,chr20:3767578-3786762:+	SNU182_LIVER	1	1	0.3944	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	MT-TA--MT-TC	39	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3418	0.0613	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU182_LIVER	1	1	0.4031	FALSE	462	80	0	856	0	FALSE	ACH-000483
SNU182_LIVER	GREB1L--TULP3	24	9	GREB1L	8901	chr18:18983955:+	TULP3	50038	chr12:3031428:+	ONLY_REF_SPLICE	YES	18	50	0.65	0.4	0.2103	0.0789	{Klijn_CCL:Liver=1},GREB1L->chr18:18822203-19105378:+,growth_regulation_by_estrogen_in_breast_cancer-like,TULP3->chr12:2986389-3050306:+,tubby_like_protein_3	SNU182_LIVER	0.4	0.65	0.2892	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	OR51S1--TP53I11	26	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2279	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU182_LIVER	1	1	0.2279	TRUE	402	216	10	229	0	FALSE	ACH-000483
SNU182_LIVER	PRICKLE1--RP11-547C5.2	22	6	PRICKLE1	6733	chr12:42864048:-	RP11-547C5.2	20073	chr12:43373203:-	ONLY_REF_SPLICE	YES	72	0	0.28	1	0.1928	0.0526	PRICKLE1->chr12:42852140-42984157:-,prickle_planar_cell_polarity_protein_1,RP11-547C5.2->chr12:43373057-43390289:-	SNU182_LIVER	0.28	1	0.2454	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	RP11-123O10.4--GRIP1	21	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.184	0.0438	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU182_LIVER	1	1	0.2278	FALSE	416	2512	207	587	0	FALSE	ACH-000483
SNU182_LIVER	NRIP1--AF127936.7	20	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.88	1	0.1753	0.0175	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU182_LIVER	0.88	1	0.1928	FALSE	292	1546	117	613	0	FALSE	ACH-000483
SNU182_LIVER	RP11-680G10.1--GSE1	19	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	61	1	0.25	0.1665	0.0088	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU182_LIVER	0.25	1	0.1753	TRUE	465	1949	224	605	0	FALSE	ACH-000483
SNU182_LIVER	RP11-680G10.1--GSE1	18	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	24	1	0.48	0.1578	0.0351	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU182_LIVER	0.48	1	0.1929	TRUE	458	1351	185	561	0	FALSE	ACH-000483
SNU182_LIVER	USP43--AHSP	17	7	USP43	1645	chr17:9548659:+	AHSP	23400	chr16:31539457:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.149	0.0613	USP43->chr17:9548015-9633008:+,ubiquitin_specific_peptidase_43,AHSP->alpha_hemoglobin_stabilizing_protein,chr16:31539185-31540124:+	SNU182_LIVER	1	1	0.2103	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	RP1-34H18.1--NAV3	18	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1578	0.0175	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SNU182_LIVER	1	1	0.1753	TRUE	254	575	65	124	0	FALSE	ACH-000483
SNU182_LIVER	CCDC57--CSNK1D	15	2	CCDC57	7669	chr17:80151632:-	CSNK1D	49497	chr17:80211120:-	ONLY_REF_SPLICE	YES	11	293	0.61	0.05	0.1315	0.0175	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_REARRANGEMENT:-:[26193],CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	SNU182_LIVER	0.05	0.61	0.149	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	MT-ND6--MT-TE	14	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1227	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU182_LIVER	1	1	0.1227	FALSE	499	1288	110	792	0	FALSE	ACH-000483
SNU182_LIVER	PRICKLE1--RP11-547C5.2	12	5	PRICKLE1	1891	chr12:42983267:-	RP11-547C5.2	18972	chr12:43383650:-	ONLY_REF_SPLICE	YES	30	0	0.36	1	0.1052	0.0438	PRICKLE1->chr12:42852140-42984157:-,prickle_planar_cell_polarity_protein_1,RP11-547C5.2->chr12:43373057-43390289:-	SNU182_LIVER	0.36	1	0.149	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	SKP2--TTC23L	12	4	SKP2	9003	chr5:36177394:+	TTC23L	18112	chr5:34845592:+	ONLY_REF_SPLICE	YES	133	1	0.11	0.94	0.1052	0.0351	SKP2->Oncogene{Bushman},S-phase_kinase-associated_protein_2,_E3_ubiquitin_protein_ligase,chr5:36152091-36184421:+,TTC23L->chr5:34838938-34899561:+,tetratricopeptide_repeat_domain_23_like	SNU182_LIVER	0.11	0.94	0.1403	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	RNF115--ANKRD34A	9	14	RNF115	1306	chr1:145611341:+	ANKRD34A	24038	chr1:145472146:+	INCL_NON_REF_SPLICE	YES	84	1	0.21	0.96	0.0789	0.1227	RNF115->chr1:145611036-145696218:+,ring_finger_protein_115,ANKRD34A->ankyrin_repeat_domain_34A,chr1:145470508-145475646:+	SNU182_LIVER	0.21	0.96	0.2016	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	COL3A1--COL4A1	12	0	COL3A1	16779	chr2:189864295:+	COL4A1	64304	chr13:110822055:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1052	0	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	SNU182_LIVER	1	1	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	MT-ND6--MT-TE	12	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1052	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU182_LIVER	1	1	0.1052	FALSE	499	1288	110	792	0	FALSE	ACH-000483
SNU182_LIVER	MT-TA--MT-TC	10	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0876	0.0438	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU182_LIVER	1	1	0.1314	FALSE	462	80	0	856	0	FALSE	ACH-000483
SNU182_LIVER	COL1A1--COL16A1	9	6	COL1A1	13881	chr17:48265894:-	COL16A1	56360	chr1:32127299:-	INCL_NON_REF_SPLICE	NO	5436	317	0	0.05	0.0789	0.0526	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1	SNU182_LIVER	0	0.05	0.1315	FALSE	0	8	0	1	0	FALSE	ACH-000483
SNU182_LIVER	PRR16--CTD-2334D19.1	9	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	40	0	0.22	1	0.0789	0.0175	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SNU182_LIVER	0.22	1	0.0964	FALSE	56	216	12	147	0	FALSE	ACH-000483
SNU182_LIVER	COL1A1--NPM1	8	4	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	5005	1	0	0.92	0.0701	0.0351	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	SNU182_LIVER	0	0.92	0.1052	TRUE	0	0	0	31	0	FALSE	ACH-000483
SNU182_LIVER	ZZZ3--USP33	4	19	ZZZ3	1158	chr1:78148947:-	USP33	28168	chr1:78207433:-	ONLY_REF_SPLICE	YES	26	89	0.47	0.21	0.0351	0.1665	LOCAL_REARRANGEMENT:-:[12568],ZZZ3->chr1:78028101-78149104:-,zinc_finger_ZZ-type_containing_3,USP33->chr1:78161672-78225537:-,ubiquitin_specific_peptidase_33	SNU182_LIVER	0.21	0.47	0.2016	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	AP000525.9--LA16c-60G3.6	8	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SNU182_LIVER	1	1	0.0701	TRUE	0	42	0	133	42	FALSE	ACH-000483
SNU182_LIVER	MT-CO3--MT-ATP6	8	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU182_LIVER	1	1	0.0701	FALSE	189	492	56	216	0	FALSE	ACH-000483
SNU182_LIVER	PCAT1--RP11-382A18.2	7	3	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0613	0.0263	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	SNU182_LIVER	1	1	0.0876	TRUE	4	84	1	46	0	FALSE	ACH-000483
SNU182_LIVER	GREB1L--TULP3	5	10	GREB1L	8901	chr18:18983955:+	TULP3	48878	chr12:3029929:+	ONLY_REF_SPLICE	YES	18	24	0.45	0.38	0.0438	0.0876	{Klijn_CCL:Liver=1},GREB1L->chr18:18822203-19105378:+,growth_regulation_by_estrogen_in_breast_cancer-like,TULP3->chr12:2986389-3050306:+,tubby_like_protein_3	SNU182_LIVER	0.38	0.45	0.1314	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	COL3A1--COL4A1	7	1	COL3A1	20808	chr2:189868825:+	COL4A1	53606	chr13:110835408:-	INCL_NON_REF_SPLICE	YES	2894	1215	0	0.01	0.0613	0.0088	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	SNU182_LIVER	0	0.01	0.0701	FALSE	0	0	0	1	0	FALSE	ACH-000483
SNU182_LIVER	CTD-2337A12.1--CAST	7	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0613	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU182_LIVER	1	1	0.0613	TRUE	347	1186	183	220	0	FALSE	ACH-000483
SNU182_LIVER	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0613	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU182_LIVER	1	1	0.0613	FALSE	462	80	0	856	0	FALSE	ACH-000483
SNU182_LIVER	CCDC88A--PNPT1	6	3	CCDC88A	23223	chr2:55559702:-	PNPT1	63632	chr2:55883355:-	ONLY_REF_SPLICE	YES	41	209	0.18	0.04	0.0526	0.0263	CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,PNPT1->chr2:55861400-55921045:-,polyribonucleotide_nucleotidyltransferase_1	SNU182_LIVER	0.04	0.18	0.0789	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	CCDC88A--PNPT1	6	3	CCDC88A	23223	chr2:55559702:-	PNPT1	63481	chr2:55883506:-	ONLY_REF_SPLICE	YES	41	217	0.18	0.04	0.0526	0.0263	CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,PNPT1->chr2:55861400-55921045:-,polyribonucleotide_nucleotidyltransferase_1	SNU182_LIVER	0.04	0.18	0.0789	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	COL3A1--COL4A1	6	3	COL3A1	19718	chr2:189867735:+	COL4A1	41091	chr13:110859037:-	INCL_NON_REF_SPLICE	YES	2480	1008	0	0.01	0.0526	0.0263	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	SNU182_LIVER	0	0.01	0.0789	FALSE	0	0	0	2	0	FALSE	ACH-000483
SNU182_LIVER	SAMD5--SASH1	6	2	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	2	7	0.8	0.53	0.0526	0.0175	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SNU182_LIVER	0.53	0.8	0.0701	TRUE	53	396	64	110	0	FALSE	ACH-000483
SNU182_LIVER	MT-CO3--MT-ATP6	6	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.58	1	0.0526	0.0088	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU182_LIVER	0.58	1	0.0614	FALSE	189	492	56	216	0	FALSE	ACH-000483
SNU182_LIVER	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU182_LIVER	1	1	0.0526	FALSE	13	9	0	364	0	FALSE	ACH-000483
SNU182_LIVER	MT-CO3--MT-ATP6	4	8	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.0351	0.0701	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU182_LIVER	0.86	1	0.1052	FALSE	189	492	56	216	0	FALSE	ACH-000483
SNU182_LIVER	RP11-476K15.1--CTD-2015H3.2	5	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0438	0.0088	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	SNU182_LIVER	0.86	1	0.0526	FALSE	0	46	0	73	0	FALSE	ACH-000483
SNU182_LIVER	RP11-96H19.1--RP11-446N19.1	5	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0438	0.0088	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU182_LIVER	0.86	0.86	0.0526	FALSE	515	4851	409	746	0	FALSE	ACH-000483
SNU182_LIVER	COL1A1--COL16A1	3	8	COL1A1	12083	chr17:48267692:-	COL16A1	26054	chr1:32164172:-	INCL_NON_REF_SPLICE	NO	6244	255	0	0.04	0.0263	0.0701	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1	SNU182_LIVER	0	0.04	0.0964	FALSE	0	8	0	1	0	FALSE	ACH-000483
SNU182_LIVER	COL3A1--COL4A1	5	0	COL3A1	20470	chr2:189868487:+	COL4A1	66320	chr13:110818641:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	SNU182_LIVER	1	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0438	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU182_LIVER	1	1	0.0438	FALSE	13	9	0	364	0	FALSE	ACH-000483
SNU182_LIVER	MT-ND6--MT-TE	4	4	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	5	0	0.62	1	0.0351	0.0351	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU182_LIVER	0.62	1	0.0702	FALSE	499	1288	110	792	0	FALSE	ACH-000483
SNU182_LIVER	RACGAP1--LIMA1	5	0	RACGAP1	3498	chr12:50419181:-	LIMA1	35156	chr12:50599851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0438	0	RACGAP1->Rac_GTPase_activating_protein_1,chr12:50370706-50426919:-,LIMA1->LIM_domain_and_actin_binding_1,chr12:50569571-50677329:-	SNU182_LIVER	1	1	0.0438	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	RP11-123O10.4--GRIP1	4	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0.0263	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU182_LIVER	1	1	0.0614	FALSE	93	270	15	244	0	FALSE	ACH-000483
SNU182_LIVER	COL3A1--COL4A1	4	2	COL3A1	22122	chr2:189870139:+	COL4A1	55816	chr13:110831725:-	INCL_NON_REF_SPLICE	YES	2553	993	0	0.01	0.0351	0.0175	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	SNU182_LIVER	0	0.01	0.0526	FALSE	0	0	0	1	0	FALSE	ACH-000483
SNU182_LIVER	RP11-120D5.1--MID1	3	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	31	0.9	0.23	0.0263	0.0526	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU182_LIVER	0.23	0.9	0.0789	FALSE	16	356	14	466	0	FALSE	ACH-000483
SNU182_LIVER	C17orf76-AS1--GNAS	4	1	C17orf76-AS1	1593	chr17:16342728:+	GNAS	29039	chr20:57470667:+	ONLY_REF_SPLICE	YES	540	952	0.01	0.01	0.0351	0.0088	C17orf76-AS1->chr17:16342136-16381992:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SNU182_LIVER	0.01	0.01	0.0439	FALSE	0	0	0	4	0	FALSE	ACH-000483
SNU182_LIVER	COL3A1--COL4A1	4	1	COL3A1	15898	chr2:189863414:+	COL4A1	46034	chr13:110850958:-	INCL_NON_REF_SPLICE	NO	2200	1047	0	0	0.0351	0.0088	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	SNU182_LIVER	0	0	0.0439	FALSE	0	0	0	1	0	FALSE	ACH-000483
SNU182_LIVER	MB21D2--FGF12	4	1	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	25	11	0.17	0.31	0.0351	0.0088	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	SNU182_LIVER	0.17	0.31	0.0439	FALSE	0	17	0	46	0	FALSE	ACH-000483
SNU182_LIVER	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	58	812	0.08	0.01	0.0351	0.0088	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU182_LIVER	0.01	0.08	0.0439	FALSE	0	0	0	434	0	FALSE	ACH-000483
SNU182_LIVER	NRIP1--AF127936.7	3	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.35	1	0.0263	0.0351	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU182_LIVER	0.35	1	0.0614	FALSE	125	705	46	456	0	FALSE	ACH-000483
SNU182_LIVER	ZDHHC8--LZTR1	4	0	ZDHHC8	4031	chr22:20127415:+	LZTR1	28718	chr22:21350985:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},ZDHHC8->chr22:20116979-20135530:+,zinc_finger_DHHC-type_containing_8,LZTR1->ArcherDX_panel,FoundationOne_panel,chr22:21333751-21353327:+,leucine-zipper-like_transcription_regulator_1	SNU182_LIVER	1	1	0.0351	TRUE	0	5	0	2	0	TRUE	ACH-000483
SNU182_LIVER	CTB-113P19.1--FTL	3	2	CTB-113P19.1	4742	chr5:151066491:+	FTL	9972	chr19:49468589:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0.0175	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	SNU182_LIVER	1	1	0.0438	TRUE	0	2	0	13	2	TRUE	ACH-000483
SNU182_LIVER	RPSAP52--HMGA2	3	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	728	1	0.01	0.0263	0.0088	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SNU182_LIVER	0.01	1	0.0351	FALSE	0	59	0	125	0	FALSE	ACH-000483
SNU182_LIVER	CTGF--RPS28	3	0	CTGF	1152	chr6:132272362:-	RPS28	7541	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	GTEx&tcga_normals:1/3694=0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SNU182_LIVER	1	1	0.0263	TRUE	0	0	0	5	0	TRUE	ACH-000483
SNU182_LIVER	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU182_LIVER	1	1	0.0263	FALSE	189	492	56	216	0	FALSE	ACH-000483
SNU182_LIVER	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU182_LIVER	1	1	0.0263	FALSE	499	1288	110	792	0	FALSE	ACH-000483
SNU182_LIVER	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU182_LIVER	1	1	0.0263	TRUE	0	0	0	434	0	FALSE	ACH-000483
SNU182_LIVER	RACGAP1--LIMA1	3	0	RACGAP1	3568	chr12:50419111:-	LIMA1	35156	chr12:50599851:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	RACGAP1->Rac_GTPase_activating_protein_1,chr12:50370706-50426919:-,LIMA1->LIM_domain_and_actin_binding_1,chr12:50569571-50677329:-	SNU182_LIVER	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	TUBA1C--ACTB	3	0	TUBA1C	7613	chr12:49658934:+	ACTB	17872	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0263	0	TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SNU182_LIVER	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	COL1A1--COL16A1	1	7	COL1A1	11871	chr17:48267904:-	COL16A1	37391	chr1:32151736:-	ONLY_REF_SPLICE	NO	6735	225	0	0.03	0.0088	0.0613	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1	SNU182_LIVER	0	0.03	0.0701	FALSE	0	0	0	1	0	FALSE	ACH-000483
SNU182_LIVER	LRCH3--PAK2	2	2	LRCH3	14068	chr3:197574331:+	PAK2	44978	chr3:196537461:+	ONLY_REF_SPLICE	YES	24	179	0.14	0.02	0.0175	0.0175	LRCH3->chr3:197518097-197615307:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_3,PAK2->chr3:196466728-196559518:+,p21_(RAC1)_activated_kinase_2	SNU182_LIVER	0.02	0.14	0.035	TRUE	0	0	0	1	0	FALSE	ACH-000483
SNU182_LIVER	RP11-120D5.1--MID1	1	6	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	0	31	1	0.18	0.0088	0.0526	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU182_LIVER	0.18	1	0.0614	FALSE	2	31	0	60	0	FALSE	ACH-000483
SNU182_LIVER	RP11-120D5.1--MID1	1	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	1	11	0.88	0.39	0.0088	0.0526	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU182_LIVER	0.39	0.88	0.0614	FALSE	0	23	1	67	0	FALSE	ACH-000483
SNU182_LIVER	FOXO1--LINC00598	2	1	FOXO1	2015	chr13:41239720:-	LINC00598	16798	chr13:41034543:-	ONLY_REF_SPLICE	YES	13	1	0.19	0.75	0.0175	0.0088	NEIGHBORS[74661],FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,LINC00598->chr13:41025131-41055143:-,long_intergenic_non-protein_coding_RNA_598	SNU182_LIVER	0.19	0.75	0.0263	FALSE	8	15	1	11	0	FALSE	ACH-000483
SNU182_LIVER	RP11-476K15.1--CTD-2015H3.2	2	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0175	0.0088	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	SNU182_LIVER	0.75	1	0.0263	FALSE	0	46	0	73	0	FALSE	ACH-000483
SNU182_LIVER	RPS6KB1--VMP1	2	1	RPS6KB1	7326	chr17:57992064:+	VMP1	32885	chr17:57842332:+	ONLY_REF_SPLICE	YES	64	164	0.04	0.02	0.0175	0.0088	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SNU182_LIVER	0.02	0.04	0.0263	TRUE	0	2	0	2	1	FALSE	ACH-000483
SNU182_LIVER	C17orf76-AS1--TXNDC15	2	0	C17orf76-AS1	1593	chr17:16342728:+	TXNDC15	15796	chr5:134223385:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	C17orf76-AS1->chr17:16342136-16381992:+,TXNDC15->chr5:134209493-134237215:+,thioredoxin_domain_containing_15	SNU182_LIVER	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	CALD1--BPGM	2	0	CALD1	3555	chr7:134464500:+	BPGM	39851	chr7:134346199:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	LOCAL_REARRANGEMENT:+:[64438],CALD1->caldesmon_1,chr7:134429003-134655479:+,BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+	SNU182_LIVER	1	1	0.0175	TRUE	0	0	0	2	0	TRUE	ACH-000483
SNU182_LIVER	FAT3--RSF1	2	0	FAT3	5624	chr11:92258114:+	RSF1	52425	chr11:77475734:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	FAT3->FAT_atypical_cadherin_3,chr11:92085262-92629618:+,RSF1->Oncogene{Bushman},chr11:77371041-77532063:-,remodeling_and_spacing_factor_1	SNU182_LIVER	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	LINC01036--LINC01037	2	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SNU182_LIVER	1	1	0.0175	FALSE	0	26	0	50	0	FALSE	ACH-000483
SNU182_LIVER	NRIP1--AF127936.7	1	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	19	0	0.21	1	0.0088	0.0351	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU182_LIVER	0.21	1	0.0439	FALSE	164	806	69	479	0	FALSE	ACH-000483
SNU182_LIVER	TVP23C--UBB	2	0	TVP23C	6853	chr17:15449099:-	UBB	21178	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae),UBB->chr17:16284112-16286059:+,ubiquitin_B	SNU182_LIVER	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	TXNIP--IPO5	2	0	TXNIP	1584	chr1:145439052:+	IPO5	39774	chr13:98671835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0175	0	TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein,IPO5->chr13:98605912-98676551:+,importin_5	SNU182_LIVER	1	1	0.0175	TRUE	0	0	0	1	0	TRUE	ACH-000483
SNU182_LIVER	LACTB--RP11-1069G10.2	1	2	LACTB	5026	chr15:63421849:+	RP11-1069G10.2	12007	chr15:63190850:+	ONLY_REF_SPLICE	YES	91	2	0.03	0.6	0.0088	0.0175	LACTB->Oncogene{Bushman},chr15:63413999-63434260:+,lactamase_beta,RP11-1069G10.2->chr15:63188011-63191742:+	SNU182_LIVER	0.03	0.6	0.0263	TRUE	0	0	0	1	0	FALSE	ACH-000483
SNU182_LIVER	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0088	0.0175	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU182_LIVER	0.75	1	0.0263	FALSE	407	2205	196	549	0	FALSE	ACH-000483
SNU182_LIVER	SKP2--TTC23L	1	2	SKP2	9003	chr5:36177394:+	TTC23L	19339	chr5:34850290:+	ONLY_REF_SPLICE	YES	133	2	0.02	0.6	0.0088	0.0175	SKP2->Oncogene{Bushman},S-phase_kinase-associated_protein_2,_E3_ubiquitin_protein_ligase,chr5:36152091-36184421:+,TTC23L->chr5:34838938-34899561:+,tetratricopeptide_repeat_domain_23_like	SNU182_LIVER	0.02	0.6	0.0263	TRUE	0	0	0	1	0	FALSE	ACH-000483
SNU182_LIVER	CALD1--BPGM	1	1	CALD1	6757	chr7:134528722:+	BPGM	39851	chr7:134346199:+	ONLY_REF_SPLICE	YES	1206	14	0	0.12	0.0088	0.0088	LOCAL_REARRANGEMENT:+:[64438],CALD1->caldesmon_1,chr7:134429003-134655479:+,BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+	SNU182_LIVER	0	0.12	0.0176	FALSE	0	0	0	2	0	FALSE	ACH-000483
SNU182_LIVER	COL3A1--COL4A1	1	1	COL3A1	14599	chr2:189862115:+	COL4A1	34911	chr13:110866173:-	ONLY_REF_SPLICE	YES	2628	827	0	0	0.0088	0.0088	GTEx&tcga_normals:1/3694=0.03%,HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1	SNU182_LIVER	0	0	0.0176	FALSE	0	0	0	1	0	FALSE	ACH-000483
SNU182_LIVER	LDLRAD3--PRR5L	1	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	20830	chr11:36350668:+	ONLY_REF_SPLICE	NO	20	0	0.09	1	0.0088	0.0088	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	SNU182_LIVER	0.09	1	0.0176	FALSE	2	24	3	12	0	FALSE	ACH-000483
SNU182_LIVER	SDC2--CPQ	1	1	SDC2	1981	chr8:97506559:+	CPQ	28269	chr8:97978163:+	ONLY_REF_SPLICE	NO	1025	64	0	0.03	0.0088	0.0088	NEIGHBORS[33455],SDC2->chr8:97505579-97624000:+,syndecan_2,CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+	SNU182_LIVER	0	0.03	0.0176	FALSE	2	0	1	1	0	FALSE	ACH-000483
EFO27_OVARY	MT-ND6--MT-TE	84	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	6	0	0.94	1	1.1625	0.0415	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO27_OVARY	0.94	1	1.204	FALSE	499	1288	110	792	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND6--MT-TE	78	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0795	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO27_OVARY	1	1	1.0795	FALSE	499	1288	110	792	0	FALSE	ACH-000936
EFO27_OVARY	TIMM23B--LINC00843	57	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.96	0.7889	0.3321	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EFO27_OVARY	0.96	1	1.121	TRUE	508	994	45	981	0	FALSE	ACH-000936
EFO27_OVARY	MT-TC--MT-TY	51	0	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7058	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	EFO27_OVARY	1	1	0.7058	FALSE	51	280	19	36	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND1	48	3	MT-ND4	2043	chrM:11802:+	MT-ND1	5745	chrM:3673:+	INCL_NON_REF_SPLICE	NO	22577	14884	0	0	0.6643	0.0415	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	EFO27_OVARY	0	0	0.7058	FALSE	51	52	3	16	0	FALSE	ACH-000936
EFO27_OVARY	IQGAP1--CTD-2315E11.1	43	6	IQGAP1	3814	chr15:90969498:+	CTD-2315E11.1	46960	chr15:90676629:+	ONLY_REF_SPLICE	YES	206	0	0.19	1	0.5951	0.083	IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,CTD-2315E11.1->chr15:90645881-90676674:+	EFO27_OVARY	0.19	1	0.6781	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	KANSL1--ARL17B	34	31	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	44	76	0.6	0.46	0.4705	0.429	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	EFO27_OVARY	0.46	0.6	0.8995	TRUE	181	1564	124	196	0	FALSE	ACH-000936
EFO27_OVARY	MT-TA--MT-TC	36	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4982	0.0692	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFO27_OVARY	1	1	0.5674	FALSE	462	80	0	856	0	FALSE	ACH-000936
EFO27_OVARY	TIMM23--RP11-464F9.1	35	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	200	8	0.17	0.83	0.4844	0.0692	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EFO27_OVARY	0.17	0.83	0.5536	TRUE	519	3926	326	965	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND6--MT-TE	28	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3875	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO27_OVARY	1	1	0.3875	FALSE	499	1288	110	792	0	FALSE	ACH-000936
EFO27_OVARY	MT-TA--MT-TC	24	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3321	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFO27_OVARY	1	1	0.3321	FALSE	462	80	0	856	0	FALSE	ACH-000936
EFO27_OVARY	MT-TA--MT-TN	22	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3045	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFO27_OVARY	1	1	0.3045	FALSE	369	2501	205	193	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	7	53	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	24	8	0.71	0.88	0.0969	0.7335	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.71	0.88	0.8304	FALSE	344	826	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	12	33	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	9	6	0.83	0.88	0.1661	0.4567	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.83	0.88	0.6228	FALSE	344	821	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	6	56	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	30	0	0.67	1	0.083	0.775	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.67	1	0.858	FALSE	344	826	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	20	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2768	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	1	1	0.2768	FALSE	344	821	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	18	4	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	156	0	0.12	1	0.2491	0.0554	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.12	1	0.3045	FALSE	344	827	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-TA--MT-TN	19	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.263	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFO27_OVARY	1	1	0.263	FALSE	369	2501	205	193	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	4	57	MT-ND4	1285	chrM:11044:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	147	0	0.29	1	0.0554	0.7889	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.29	1	0.8443	FALSE	344	827	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND1--MT-RNR2	17	3	MT-ND1	1454	chrM:3760:+	MT-RNR2	5501	chrM:2215:+	INCL_NON_REF_SPLICE	YES	117	19755	0.15	0	0.2353	0.0415	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO27_OVARY	0	0.15	0.2768	FALSE	120	26	5	87	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	3	56	MT-ND4	1197	chrM:10956:+	MT-ND4L	5432	chrM:10523:+	INCL_NON_REF_SPLICE	YES	57	0	0.51	1	0.0415	0.775	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.51	1	0.8165	FALSE	344	826	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND6--MT-TE	16	4	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	7	0	0.74	1	0.2214	0.0554	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO27_OVARY	0.74	1	0.2768	FALSE	499	1288	110	792	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ATP8	16	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	22137	3	0	0.85	0.2214	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFO27_OVARY	0	0.85	0.2352	FALSE	230	193	14	283	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	3	53	MT-ND4	1112	chrM:10871:+	MT-ND4L	5464	chrM:10555:+	INCL_NON_REF_SPLICE	YES	18	0	0.76	1	0.0415	0.7335	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.76	1	0.775	FALSE	344	826	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	6	41	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	8	5	0.85	0.9	0.083	0.5674	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.85	0.9	0.6504	FALSE	344	826	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-TC--MT-TY	16	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2214	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	EFO27_OVARY	1	1	0.2214	FALSE	51	280	19	36	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	15	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2076	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	1	1	0.2076	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	6	35	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	12434	4	0	0.91	0.083	0.4844	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0	0.91	0.5674	FALSE	344	827	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	11	11	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	20350	4	0	0.85	0.1522	0.1522	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0	0.85	0.3044	FALSE	328	800	43	304	0	FALSE	ACH-000936
EFO27_OVARY	MT-ATP6--MT-CO1	12	4	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	15618	40916	0	0	0.1661	0.0554	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFO27_OVARY	0	0	0.2215	FALSE	183	104	9	328	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	11	7	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	3	3	0.86	0.86	0.1522	0.0969	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	0.86	0.86	0.2491	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-TA--MT-TN	7	23	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0969	0.3183	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFO27_OVARY	1	1	0.4152	FALSE	369	2501	205	193	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	12	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1661	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	1	1	0.1661	FALSE	344	821	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	3	34	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	186	4	0.17	0.9	0.0415	0.4705	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.17	0.9	0.512	FALSE	344	827	44	306	0	FALSE	ACH-000936
EFO27_OVARY	C15orf57--CBX3	9	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	81	22	0.18	0.45	0.1246	0.1246	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EFO27_OVARY	0.18	0.45	0.2492	TRUE	267	562	48	632	0	FALSE	ACH-000936
EFO27_OVARY	MT-TA--MT-TC	10	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1384	0.0692	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFO27_OVARY	1	1	0.2076	FALSE	462	80	0	856	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND6--MT-TE	10	4	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.82	1	0.1384	0.0554	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO27_OVARY	0.82	1	0.1938	FALSE	499	1288	110	792	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	9	7	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	16	6	0.5	0.73	0.1246	0.0969	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	0.5	0.73	0.2215	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ATP8	10	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22267	4	0	0.73	0.1384	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFO27_OVARY	0	0.73	0.1522	FALSE	230	198	14	283	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND3--MT-ATP8	10	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1384	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFO27_OVARY	1	1	0.1384	FALSE	351	233	23	137	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND6--MT-TE	9	4	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	5	0	0.72	1	0.1246	0.0554	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO27_OVARY	0.72	1	0.18	FALSE	499	1288	110	792	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	8	7	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	14	6	0.52	0.71	0.1107	0.0969	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	0.52	0.71	0.2076	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	8	7	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1936	3	0.01	0.83	0.1107	0.0969	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.01	0.83	0.2076	FALSE	344	827	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	6	11	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1679	4	0.01	0.81	0.083	0.1522	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.01	0.81	0.2352	FALSE	344	827	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-TA--MT-TN	7	7	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0969	0.0969	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFO27_OVARY	1	1	0.1938	FALSE	369	2501	205	193	0	FALSE	ACH-000936
EFO27_OVARY	MT-ATP6--MT-CO1	7	6	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	18995	39843	0	0	0.0969	0.083	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFO27_OVARY	0	0	0.1799	FALSE	183	104	9	328	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ATP8	8	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22319	180	0	0.05	0.1107	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFO27_OVARY	0	0.05	0.1245	FALSE	230	198	14	283	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	8	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1107	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	1	1	0.1107	FALSE	344	821	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	7	4	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	54	0	0.17	1	0.0969	0.0554	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.17	1	0.1523	FALSE	344	826	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	6	7	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	2	15	0.87	0.46	0.083	0.0969	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	0.46	0.87	0.1799	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND1--MT-RNR2	7	3	MT-ND1	1450	chrM:3756:+	MT-RNR2	5497	chrM:2211:+	INCL_NON_REF_SPLICE	YES	111	19271	0.08	0	0.0969	0.0415	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO27_OVARY	0	0.08	0.1384	FALSE	120	26	5	87	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	6	6	MT-ND4	1279	chrM:11038:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	128	3	0.09	0.8	0.083	0.083	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.09	0.8	0.166	FALSE	344	827	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	5	8	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	3	39	0.81	0.25	0.0692	0.1107	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	0.25	0.81	0.1799	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND6--MT-TE	7	0	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0969	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO27_OVARY	1	1	0.0969	FALSE	499	1288	110	792	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND6--MT-TE	7	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0969	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO27_OVARY	1	1	0.0969	FALSE	499	1288	110	792	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND6--MT-TE	6	4	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	6	0	0.62	1	0.083	0.0554	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO27_OVARY	0.62	1	0.1384	FALSE	499	1288	110	792	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	5	7	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	26	6	0.32	0.67	0.0692	0.0969	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	0.32	0.67	0.1661	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	5	6	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	6	5	0.65	0.69	0.0692	0.083	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.65	0.69	0.1522	FALSE	344	821	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-TA--MT-TC	6	2	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.083	0.0277	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFO27_OVARY	1	1	0.1107	FALSE	462	80	0	856	0	FALSE	ACH-000936
EFO27_OVARY	RP11-96H19.1--RP11-446N19.1	5	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.0692	0.083	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EFO27_OVARY	0.85	1	0.1522	FALSE	515	4851	409	746	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND1	6	1	MT-ND4	1213	chrM:10972:+	MT-ND1	5394	chrM:3322:+	INCL_NON_REF_SPLICE	YES	22310	0	0	1	0.083	0.0138	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	EFO27_OVARY	0	1	0.0968	FALSE	51	50	3	16	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	3	12	MT-CO3	1228	chrM:9434:+	MT-ATP6	4749	chrM:8491:+	INCL_NON_REF_SPLICE	NO	15	0	0.5	1	0.0415	0.1661	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	0.5	1	0.2076	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	6	0	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.083	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	1	1	0.083	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND3--MT-TG	6	0	MT-ND3	1063	chrM:10121:+	MT-TG	4390	chrM:10034:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.083	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	EFO27_OVARY	1	1	0.083	FALSE	97	9	0	14	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.083	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO27_OVARY	1	1	0.083	FALSE	499	1288	110	792	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	3	11	MT-CO3	1126	chrM:9332:+	MT-ATP6	5034	chrM:8776:+	INCL_NON_REF_SPLICE	YES	6	31	0.7	0.31	0.0415	0.1522	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	0.31	0.7	0.1937	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND6--MT-TE	5	3	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	6	0	0.57	1	0.0692	0.0415	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO27_OVARY	0.57	1	0.1107	FALSE	499	1288	110	792	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	3	10	MT-CO3	1113	chrM:9319:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	4	0	0.76	1	0.0415	0.1384	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	0.76	1	0.1799	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND1--MT-RNR2	5	2	MT-ND1	1264	chrM:3570:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	22	0	0.24	1	0.0692	0.0277	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO27_OVARY	0.24	1	0.0969	FALSE	114	26	4	85	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND1--MT-RNR2	5	2	MT-ND1	1264	chrM:3570:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	22	0	0.24	1	0.0692	0.0277	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO27_OVARY	0.24	1	0.0969	FALSE	114	26	4	85	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND1--MT-RNR2	5	2	MT-ND1	1272	chrM:3578:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	YES	24	0	0.23	1	0.0692	0.0277	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO27_OVARY	0.23	1	0.0969	FALSE	114	26	4	85	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	4	6	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	24	3	0.29	0.77	0.0554	0.083	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.29	0.77	0.1384	FALSE	344	826	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	3	10	MT-ND4	1201	chrM:10960:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	64	4	0.17	0.76	0.0415	0.1384	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.17	0.76	0.1799	FALSE	344	826	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	3	10	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	156	4	0.08	0.76	0.0415	0.1384	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.08	0.76	0.1799	FALSE	344	827	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	3	10	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	54	4	0.19	0.76	0.0415	0.1384	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.19	0.76	0.1799	FALSE	344	826	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	4	6	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	62	3	0.14	0.77	0.0554	0.083	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.14	0.77	0.1384	FALSE	344	826	44	306	0	FALSE	ACH-000936
EFO27_OVARY	C15orf57--CBX3	4	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	80	24	0.1	0.27	0.0554	0.0692	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EFO27_OVARY	0.1	0.27	0.1246	TRUE	267	562	48	632	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ATP8	5	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	27451	2149	0	0	0.0692	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFO27_OVARY	0	0	0.083	FALSE	231	217	16	283	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ATP8	5	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	28416	4	0	0.6	0.0692	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFO27_OVARY	0	0.6	0.083	FALSE	231	217	16	283	0	FALSE	ACH-000936
EFO27_OVARY	RP11-96H19.1--RP11-446N19.1	3	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.0415	0.1246	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EFO27_OVARY	0.86	1	0.1661	FALSE	407	2205	196	549	0	FALSE	ACH-000936
EFO27_OVARY	CDC73--RGS13	4	4	CDC73	2651	chr1:193094347:+	RGS13	24766	chr1:192605374:+	INCL_NON_REF_SPLICE	YES	109	0	0.07	1	0.0554	0.0554	CDC73->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cell_division_cycle_73,chr1:193091147-193223031:+,RGS13->chr1:192605275-192629390:+,regulator_of_G-protein_signaling_13	EFO27_OVARY	0.07	1	0.1108	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	MT-ATP6--MT-CO1	4	4	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	15558	23713	0	0	0.0554	0.0554	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFO27_OVARY	0	0	0.1108	FALSE	183	104	9	328	0	FALSE	ACH-000936
EFO27_OVARY	MT-ATP6--MT-CO1	4	4	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	15659	38721	0	0	0.0554	0.0554	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFO27_OVARY	0	0	0.1108	FALSE	183	104	9	328	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND5--MT-RNR2	4	4	MT-ND5	2047	chrM:13383:+	MT-RNR2	6367	chrM:2225:+	INCL_NON_REF_SPLICE	YES	9243	19805	0	0	0.0554	0.0554	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO27_OVARY	0	0	0.1108	FALSE	4	14	1	9	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0692	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO27_OVARY	1	1	0.0692	FALSE	499	1288	110	792	0	FALSE	ACH-000936
EFO27_OVARY	MT-TC--MT-TY	5	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0692	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	EFO27_OVARY	1	1	0.0692	FALSE	51	280	19	36	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	3	7	MT-CO3	1083	chrM:9289:+	MT-ATP6	5185	chrM:8927:+	INCL_NON_REF_SPLICE	YES	3	96	0.77	0.09	0.0415	0.0969	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	0.09	0.77	0.1384	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	3	7	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	2	4	0.83	0.71	0.0415	0.0969	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	0.71	0.83	0.1384	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	3	6	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	3	3	0.75	0.75	0.0415	0.083	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	0.75	0.75	0.1245	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	3	6	MT-CO3	1061	chrM:9267:+	MT-ATP6	5343	chrM:9085:+	INCL_NON_REF_SPLICE	YES	2	2	0.82	0.82	0.0415	0.083	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	0.82	0.82	0.1245	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ATP8	4	2	MT-ND4	1394	chrM:11153:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	28534	0	0	1	0.0554	0.0277	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFO27_OVARY	0	1	0.0831	FALSE	231	217	16	283	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	3	6	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	135	3	0.06	0.75	0.0415	0.083	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.06	0.75	0.1245	FALSE	344	827	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-TA--MT-TN	3	6	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0415	0.083	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFO27_OVARY	1	1	0.1245	FALSE	369	2501	205	193	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	4	1	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0554	0.0138	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	0.62	1	0.0692	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND1--MT-RNR2	3	5	MT-ND1	1861	chrM:4167:+	MT-RNR2	5504	chrM:2218:+	INCL_NON_REF_SPLICE	YES	10	20223	0.44	0	0.0415	0.0692	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO27_OVARY	0	0.44	0.1107	FALSE	120	26	5	87	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND5--MT-RNR2	3	5	MT-ND5	2455	chrM:13791:+	MT-RNR2	6367	chrM:2225:+	INCL_NON_REF_SPLICE	YES	6913	19805	0	0	0.0415	0.0692	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO27_OVARY	0	0	0.1107	FALSE	4	14	1	9	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	4	0	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	1	1	0.0554	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	4	0	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	1	1	0.0554	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND3--MT-TG	4	0	MT-ND3	1071	chrM:10129:+	MT-TG	4398	chrM:10042:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0	LOCAL_REARRANGEMENT:+:[1],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-TG->chrM:9991-10058:+,mitochondrially_encoded_tRNA_glycine	EFO27_OVARY	1	1	0.0554	FALSE	97	9	0	14	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ND4L	3	4	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	156	0	0.04	1	0.0415	0.0554	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EFO27_OVARY	0.04	1	0.0969	FALSE	344	827	44	306	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND6--MT-TE	3	4	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.64	1	0.0415	0.0554	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO27_OVARY	0.64	1	0.0969	FALSE	499	1288	110	792	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO27_OVARY	1	1	0.0554	FALSE	499	1288	110	792	0	FALSE	ACH-000936
EFO27_OVARY	MT-TA--MT-TN	4	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0554	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	EFO27_OVARY	1	1	0.0554	FALSE	369	2501	205	193	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ATP8	3	3	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	28393	0	0	1	0.0415	0.0415	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFO27_OVARY	0	1	0.083	FALSE	231	217	16	283	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND6--MT-TE	3	3	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0415	0.0415	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO27_OVARY	0.75	1	0.083	FALSE	499	1288	110	792	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	28060	0	0	1	0.0415	0.0277	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFO27_OVARY	0	1	0.0692	FALSE	231	217	16	283	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3639	180	0	0.03	0.0415	0.0277	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFO27_OVARY	0	0.03	0.0692	FALSE	216	209	16	281	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ATP8	3	2	MT-ND4	2250	chrM:12009:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	3639	3	0	0.62	0.0415	0.0277	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFO27_OVARY	0	0.62	0.0692	FALSE	216	209	16	281	0	FALSE	ACH-000936
EFO27_OVARY	KANSL1--ARL17B	1	9	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	NO	44	74	0.19	0.12	0.0138	0.1246	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	EFO27_OVARY	0.12	0.19	0.1384	TRUE	20	16	0	28	0	FALSE	ACH-000936
EFO27_OVARY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1063	chrM:8589:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	10140	9978	0	0	0.0415	0.0138	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFO27_OVARY	0	0	0.0553	FALSE	183	104	9	328	0	FALSE	ACH-000936
EFO27_OVARY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1063	chrM:8589:+	MT-CO1	5236	chrM:6458:+	INCL_NON_REF_SPLICE	YES	10140	22437	0	0	0.0415	0.0138	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFO27_OVARY	0	0	0.0553	FALSE	183	104	9	328	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND4--MT-ATP8	3	1	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17003	180	0	0.02	0.0415	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFO27_OVARY	0	0.02	0.0553	FALSE	230	193	14	283	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND6--MT-TE	3	1	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0415	0.0138	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO27_OVARY	0.67	1	0.0553	FALSE	499	1288	110	792	0	FALSE	ACH-000936
EFO27_OVARY	RP11-123O10.4--GRIP1	3	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0415	0.0138	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	EFO27_OVARY	1	1	0.0553	FALSE	416	2512	207	587	0	FALSE	ACH-000936
EFO27_OVARY	ID3--MT-RNR2	3	0	ID3	1668	chr1:23885618:-	MT-RNR2	5917	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0415	0	ID3->Oncogene{Bushman},chr1:23884409-23886285:-,inhibitor_of_DNA_binding_3,_HLH_protein,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO27_OVARY	1	1	0.0415	FALSE	0	0	0	1	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	3	0	MT-CO3	1525	chrM:9731:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0415	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	1	1	0.0415	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	3	0	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0415	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	1	1	0.0415	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0415	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO27_OVARY	1	1	0.0415	FALSE	189	492	56	216	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND1--MT-RNR2	3	0	MT-ND1	1009	chrM:3315:+	MT-RNR2	6449	chrM:3163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0415	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO27_OVARY	1	1	0.0415	FALSE	92	22	4	61	0	FALSE	ACH-000936
EFO27_OVARY	MT-ND1--MT-RNR2	3	0	MT-ND1	1207	chrM:3513:+	MT-RNR2	5683	chrM:2397:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0415	0	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO27_OVARY	1	1	0.0415	FALSE	120	26	5	87	0	FALSE	ACH-000936
EFO27_OVARY	TMEM161A--MEF2B	3	0	TMEM161A	5583	chr19:19240965:-	MEF2B	20108	chr19:19261573:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0415	0	LOCAL_REARRANGEMENT:-:[7055],TMEM161A->chr19:19229978-19249322:-,transmembrane_protein_161A,MEF2B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:19256377-19303400:-,myocyte_enhancer_factor_2B	EFO27_OVARY	1	1	0.0415	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0138	0.083	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EFO27_OVARY	1	1	0.0968	FALSE	467	2173	244	435	0	FALSE	ACH-000936
EFO27_OVARY	CENPL--GAS5	2	1	CENPL	1795	chr1:173793064:-	GAS5	15532	chr1:173836181:-	ONLY_REF_SPLICE	YES	34	10	0.08	0.23	0.0277	0.0138	LOCAL_REARRANGEMENT:-:[39180],CENPL->centromere_protein_L,chr1:173768688-173793858:-,GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding)	EFO27_OVARY	0.08	0.23	0.0415	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0277	0.0138	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	EFO27_OVARY	0.5	1	0.0415	FALSE	292	1546	117	613	0	FALSE	ACH-000936
EFO27_OVARY	ATP5B--ANKRD29	2	0	ATP5B	3612	chr12:57037187:-	ANKRD29	14987	chr18:21226251:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-,ANKRD29->ankyrin_repeat_domain_29,chr18:21178890-21242849:-	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	CELF2--EXOC2	2	0	CELF2	2379	chr10:11060126:+	EXOC2	51804	chr6:532610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	CELF2->CUGBP,_Elav-like_family_member_2,chr10:11047259-11378674:+,EXOC2->chr6:485133-693117:-,exocyst_complex_component_2	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	CERS5--LIMA1	2	0	CERS5	1405	chr12:50560884:-	LIMA1	38181	chr12:50575820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	LOCAL_REARRANGEMENT:-:[8283],CERS5->ceramide_synthase_5,chr12:50523575-50561288:-,LIMA1->LIM_domain_and_actin_binding_1,chr12:50569571-50677329:-	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	CTD-2021J15.1--ALG11	2	0	CTD-2021J15.1	1094	chr3:98621361:+	ALG11	7769	chr13:52593049:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	CTD-2021J15.1->chr3:98621268-98737406:+,ALG11->ALG11,_alpha-1,2-mannosyltransferase,chr13:52586534-52603800:+	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	DMWD--DDX39B	2	0	DMWD	2670	chr19:46294163:-	DDX39B	22492	chr6:31499182:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	DMWD->chr19:46286205-46296060:-,dystrophia_myotonica,_WD_repeat_containing,DDX39B->DEAD-box_helicase_39B,chr6:31497996-31510225:-	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	FAM204A--SEC23IP	2	0	FAM204A	2844	chr10:120095694:-	SEC23IP	30013	chr10:121685548:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	FAM204A->chr10:120065401-120101840:-,family_with_sequence_similarity_204_member_A,SEC23IP->SEC23_interacting_protein,chr10:121652223-121702014:+	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	IFT140--HN1L	2	0	IFT140	21093	chr16:1607936:-	HN1L	40011	chr16:1735440:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	LOCAL_INVERSION:-:+:[66146],IFT140->chr16:1560428-1662111:-,intraflagellar_transport_140,HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like	EFO27_OVARY	1	1	0.0277	TRUE	0	2	0	2	0	TRUE	ACH-000936
EFO27_OVARY	MRPL18--SURF2	2	0	MRPL18	2315	chr6:160212158:+	SURF2	8625	chr9:136224587:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	MRPL18->chr6:160210844-160219468:+,mitochondrial_ribosomal_protein_L18,SURF2->chr9:136223428-136228045:+,surfeit_2	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	NRIP1--AF127936.7	1	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	37	0	0.12	1	0.0138	0.0554	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	EFO27_OVARY	0.12	1	0.0692	FALSE	164	806	69	479	0	FALSE	ACH-000936
EFO27_OVARY	PCNX--UBL4A	2	0	PCNX	34724	chr14:71524441:+	UBL4A	58507	chrX:153714672:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	PCNX->chr14:71374122-71582099:+,UBL4A->chrX:153712056-153715009:-,ubiquitin_like_4A	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	RC3H2--GOLT1B	2	0	RC3H2	3064	chr9:125659558:-	GOLT1B	33106	chr12:21660878:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0277	0	RC3H2->chr9:125606835-125667620:-,ring_finger_and_CCCH-type_domains_2,GOLT1B->chr12:21654715-21671342:+,golgi_transport_1B	EFO27_OVARY	1	1	0.0277	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	IQGAP1--CTD-2315E11.1	1	3	IQGAP1	2279	chr15:90934105:+	CTD-2315E11.1	46960	chr15:90676629:+	ONLY_REF_SPLICE	YES	238	0	0.02	1	0.0138	0.0415	IQGAP1->IQ_motif_containing_GTPase_activating_protein_1,chr15:90931450-91045475:+,CTD-2315E11.1->chr15:90645881-90676674:+	EFO27_OVARY	0.02	1	0.0553	TRUE	0	0	0	1	0	FALSE	ACH-000936
EFO27_OVARY	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	NO	0	41	1	0.05	0.0138	0.0138	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	EFO27_OVARY	0.05	1	0.0276	TRUE	347	1186	183	220	0	FALSE	ACH-000936
EFO27_OVARY	NQO2--COA5	1	1	NQO2	9651	chr6:3006793:+	COA5	21723	chr2:99220654:-	ONLY_REF_SPLICE	YES	136	104	0.01	0.02	0.0138	0.0138	NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+,COA5->chr2:99215773-99224978:-,cytochrome_c_oxidase_assembly_factor_5	EFO27_OVARY	0.01	0.02	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000936
EFO27_OVARY	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0138	0.0138	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	EFO27_OVARY	1	1	0.0276	FALSE	93	270	15	244	0	FALSE	ACH-000936
EFO27_OVARY	RP11-867G23.8--FUT11	1	1	RP11-867G23.8	2471	chr11:66116941:+	FUT11	16378	chr10:75538586:+	ONLY_REF_SPLICE	YES	3	22	0.4	0.08	0.0138	0.0138	RP11-867G23.8->chr11:66115421-66132275:+,FUT11->chr10:75532049-75540009:+,fucosyltransferase_11	EFO27_OVARY	0.08	0.4	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000936
EFO27_OVARY	TMEM161A--MEF2B	1	1	TMEM161A	7095	chr19:19232117:-	MEF2B	20108	chr19:19261573:-	ONLY_REF_SPLICE	NO	142	35	0.01	0.05	0.0138	0.0138	LOCAL_REARRANGEMENT:-:[7055],TMEM161A->chr19:19229978-19249322:-,transmembrane_protein_161A,MEF2B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:19256377-19303400:-,myocyte_enhancer_factor_2B	EFO27_OVARY	0.01	0.05	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000936
WM1799_SKIN	PRKD1--STXBP6	224	66	PRKD1	5311	chr14:30194742:-	STXBP6	38730	chr14:25444056:-	ONLY_REF_SPLICE	YES	9	27	0.97	0.91	2.1087	0.6213	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,STXBP6->chr14:25278862-25519503:-,syntaxin_binding_protein_6	WM1799_SKIN	0.91	0.97	2.73	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	PYROXD2--HPSE2	89	57	PYROXD2	5918	chr10:100167339:-	HPSE2	30736	chr10:100249953:-	ONLY_REF_SPLICE	YES	34	0	0.81	1	0.8378	0.5366	LOCAL_REARRANGEMENT:-:[43934],PYROXD2->chr10:100143322-100174941:-,pyridine_nucleotide-disulphide_oxidoreductase_domain_2,HPSE2->chr10:100218875-100995619:-,heparanase_2_(inactive)	WM1799_SKIN	0.81	1	1.3744	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	TIMM23B--LINC00843	69	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6496	0.2165	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	WM1799_SKIN	1	1	0.8661	TRUE	508	994	45	981	0	FALSE	ACH-000661
WM1799_SKIN	RP11-159G9.5--HTR1F	37	37	RP11-159G9.5	4596	chr3:88175419:+	HTR1F	12334	chr3:88039858:+	INCL_NON_REF_SPLICE	YES	29	0	0.72	1	0.3483	0.3483	LOCAL_REARRANGEMENT:+:[65505],RP11-159G9.5->chr3:88108424-88188123:+,HTR1F->5-hydroxytryptamine_receptor_1F,chr3:88039846-88042919:+	WM1799_SKIN	0.72	1	0.6966	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	TIMM23--RP11-464F9.1	40	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	188	4	0.18	0.91	0.3766	0.0188	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	WM1799_SKIN	0.18	0.91	0.3954	TRUE	519	3926	326	965	0	FALSE	ACH-000661
WM1799_SKIN	MT-TA--MT-TC	38	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3577	0.0282	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	WM1799_SKIN	1	1	0.3859	FALSE	462	80	0	856	0	FALSE	ACH-000661
WM1799_SKIN	KANSL1--ARL17B	23	14	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	20	31	0.65	0.54	0.2165	0.1318	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	WM1799_SKIN	0.54	0.65	0.3483	TRUE	181	1564	124	196	0	FALSE	ACH-000661
WM1799_SKIN	RP11-159G9.5--HTR1F	21	20	RP11-159G9.5	3460	chr3:88162346:+	HTR1F	12334	chr3:88039858:+	INCL_NON_REF_SPLICE	YES	79	0	0.34	1	0.1977	0.1883	LOCAL_REARRANGEMENT:+:[65505],RP11-159G9.5->chr3:88108424-88188123:+,HTR1F->5-hydroxytryptamine_receptor_1F,chr3:88039846-88042919:+	WM1799_SKIN	0.34	1	0.386	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	PRKD1--STXBP6	17	14	PRKD1	5311	chr14:30194742:-	STXBP6	41078	chr14:25326363:-	ONLY_REF_SPLICE	YES	9	76	0.78	0.29	0.16	0.1318	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,STXBP6->chr14:25278862-25519503:-,syntaxin_binding_protein_6	WM1799_SKIN	0.29	0.78	0.2918	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	MT-ND6--MT-TE	17	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.16	0.0377	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	WM1799_SKIN	1	1	0.1977	FALSE	499	1288	110	792	0	FALSE	ACH-000661
WM1799_SKIN	RP11-444D3.1--SOX5	16	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	14	1	0.6	0.1506	0.0471	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	WM1799_SKIN	0.6	1	0.1977	TRUE	477	1352	189	275	0	FALSE	ACH-000661
WM1799_SKIN	KMT2C--CTBP2P1	14	2	KMT2C	8616	chr7:151970790:-	CTBP2P1	74892	chrY:59001440:+	INCL_NON_REF_SPLICE	YES	27	0	0.37	1	0.1318	0.0188	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,CTBP2P1->C-terminal_binding_protein_2_pseudogene_1,chrY:59001391-59001635:+	WM1799_SKIN	0.37	1	0.1506	TRUE	0	1	0	4	1	TRUE	ACH-000661
WM1799_SKIN	MT-ND6--MT-TE	11	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.1036	0.113	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	WM1799_SKIN	0.85	1	0.2166	FALSE	499	1288	110	792	0	FALSE	ACH-000661
WM1799_SKIN	RP11-141M1.3--STARD13	10	15	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	60	0.93	0.29	0.0941	0.1412	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	WM1799_SKIN	0.29	0.93	0.2353	FALSE	49	120	16	70	0	FALSE	ACH-000661
WM1799_SKIN	C15orf57--CBX3	11	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	77	46	0.21	0.31	0.1036	0.0941	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	WM1799_SKIN	0.21	0.31	0.1977	TRUE	267	562	48	632	0	FALSE	ACH-000661
WM1799_SKIN	RP1-34H18.1--NAV3	13	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.1224	0.0188	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	WM1799_SKIN	0.94	1	0.1412	TRUE	254	575	65	124	0	FALSE	ACH-000661
WM1799_SKIN	AP003900.6--AP000345.1	11	2	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	9	0	0.59	1	0.1036	0.0188	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	WM1799_SKIN	0.59	1	0.1224	TRUE	0	8	0	37	1	FALSE	ACH-000661
WM1799_SKIN	RP11-123O10.4--GRIP1	11	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1036	0.0188	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	WM1799_SKIN	1	1	0.1224	FALSE	416	2512	207	587	0	FALSE	ACH-000661
WM1799_SKIN	MT-ND6--MT-TE	10	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0941	0.0377	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	WM1799_SKIN	1	1	0.1318	FALSE	499	1288	110	792	0	FALSE	ACH-000661
WM1799_SKIN	C15orf57--CBX3	9	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	75	46	0.18	0.26	0.0847	0.0659	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	WM1799_SKIN	0.18	0.26	0.1506	TRUE	267	562	48	632	0	FALSE	ACH-000661
WM1799_SKIN	RP11-141M1.3--STARD13	7	10	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	6	60	0.74	0.22	0.0659	0.0941	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	WM1799_SKIN	0.22	0.74	0.16	FALSE	141	264	50	91	0	FALSE	ACH-000661
WM1799_SKIN	CD82--GLYAT	9	1	CD82	2222	chr11:44587286:+	GLYAT	21841	chr11:58491984:-	ONLY_REF_SPLICE	YES	35	0	0.22	1	0.0847	0.0094	CD82->CD82_molecule,Oncogene{Bushman},chr11:44585977-44641913:+,GLYAT->chr11:58407899-58499447:-,glycine-N-acyltransferase	WM1799_SKIN	0.22	1	0.0941	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	MT-ATP6--MT-CO1	8	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	6320	17054	0	0	0.0753	0.0094	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	WM1799_SKIN	0	0	0.0847	FALSE	183	104	9	328	0	FALSE	ACH-000661
WM1799_SKIN	CTD-2023N9.1--CTD-2023N9.2	6	5	CTD-2023N9.1	1119	chr5:56691005:+	CTD-2023N9.2	7902	chr5:56869858:+	INCL_NON_REF_SPLICE	YES	7	0	0.61	1	0.0565	0.0471	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	WM1799_SKIN	0.61	1	0.1036	FALSE	0	0	0	6	0	FALSE	ACH-000661
WM1799_SKIN	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	WM1799_SKIN	1	1	0.0659	FALSE	462	80	0	856	0	FALSE	ACH-000661
WM1799_SKIN	C15orf57--CBX3	5	7	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	75	46	0.14	0.21	0.0471	0.0659	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	WM1799_SKIN	0.14	0.21	0.113	TRUE	267	562	48	632	0	FALSE	ACH-000661
WM1799_SKIN	MT-ATP6--MT-CO1	6	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	6328	16290	0	0	0.0565	0.0094	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	WM1799_SKIN	0	0	0.0659	FALSE	183	104	9	328	0	FALSE	ACH-000661
WM1799_SKIN	MT-ND6--MT-TE	4	8	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.0753	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	WM1799_SKIN	1	1	0.113	FALSE	499	1288	110	792	0	FALSE	ACH-000661
WM1799_SKIN	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0565	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	WM1799_SKIN	1	1	0.0565	FALSE	292	1546	117	613	0	FALSE	ACH-000661
WM1799_SKIN	NRIP1--AF127936.7	6	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0565	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	WM1799_SKIN	1	1	0.0565	FALSE	125	705	46	456	0	FALSE	ACH-000661
WM1799_SKIN	PDE6B--PPP2R2D	6	0	PDE6B	1510	chr4:619882:+	PPP2R2D	25830	chr10:133753533:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0565	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	WM1799_SKIN	1	1	0.0565	TRUE	5	45	2	9	0	FALSE	ACH-000661
WM1799_SKIN	MT-TA--MT-TC	5	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0.0282	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	WM1799_SKIN	1	1	0.0753	FALSE	462	80	0	856	0	FALSE	ACH-000661
WM1799_SKIN	RP11-96H19.1--RP11-446N19.1	5	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0471	0.0094	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	WM1799_SKIN	1	1	0.0565	FALSE	515	4851	409	746	0	FALSE	ACH-000661
WM1799_SKIN	MT-ATP6--MT-CO1	4	4	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	6755	0	0	1	0.0377	0.0377	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	WM1799_SKIN	0	1	0.0754	FALSE	182	97	9	327	0	FALSE	ACH-000661
WM1799_SKIN	RP4-565E6.1--HYDIN	5	0	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0471	0	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	WM1799_SKIN	1	1	0.0471	TRUE	456	1387	91	133	0	FALSE	ACH-000661
WM1799_SKIN	CTD-2023N9.1--CTD-2023N9.2	4	3	CTD-2023N9.1	1119	chr5:56691005:+	CTD-2023N9.2	11053	chr5:56910004:+	ONLY_REF_SPLICE	YES	7	1	0.5	0.88	0.0377	0.0282	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	WM1799_SKIN	0.5	0.88	0.0659	FALSE	0	0	0	9	0	FALSE	ACH-000661
WM1799_SKIN	PYROXD2--HPSE2	1	14	PYROXD2	1176	chr10:100174766:-	HPSE2	30736	chr10:100249953:-	ONLY_REF_SPLICE	NO	81	0	0.16	1	0.0094	0.1318	LOCAL_REARRANGEMENT:-:[43934],PYROXD2->chr10:100143322-100174941:-,pyridine_nucleotide-disulphide_oxidoreductase_domain_2,HPSE2->chr10:100218875-100995619:-,heparanase_2_(inactive)	WM1799_SKIN	0.16	1	0.1412	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	RP11-460N16.1--MITF	3	5	RP11-460N16.1	3607	chr3:70062823:+	MITF	17567	chr3:69928285:+	ONLY_REF_SPLICE	YES	11	17	0.42	0.32	0.0282	0.0471	LOCAL_REARRANGEMENT:+:[31240],RP11-460N16.1->chr3:70048728-70064469:+,MITF->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:69788586-70017488:+,microphthalmia-associated_transcription_factor	WM1799_SKIN	0.32	0.42	0.0753	TRUE	0	1	0	1	1	TRUE	ACH-000661
WM1799_SKIN	PDE6B--PPP2R2D	4	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	WM1799_SKIN	1	1	0.0377	TRUE	7	65	3	22	0	FALSE	ACH-000661
WM1799_SKIN	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	WM1799_SKIN	1	1	0.0377	TRUE	22	156	2	142	0	FALSE	ACH-000661
WM1799_SKIN	KIF4A--IGBP1	3	1	KIF4A	13168	chrX:69573657:+	IGBP1	35607	chrX:69368611:+	ONLY_REF_SPLICE	YES	96	97	0.04	0.04	0.0282	0.0094	KIF4A->chrX:69509879-69640682:+,kinesin_family_member_4A,IGBP1->chrX:69353299-69386174:+,immunoglobulin_(CD79A)_binding_protein_1	WM1799_SKIN	0.04	0.04	0.0376	TRUE	0	0	0	1	0	FALSE	ACH-000661
WM1799_SKIN	MT-ATP6--MT-CO1	3	1	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	7068	14655	0	0	0.0282	0.0094	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	WM1799_SKIN	0	0	0.0376	FALSE	183	104	9	328	0	FALSE	ACH-000661
WM1799_SKIN	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0282	0.0094	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	WM1799_SKIN	0.8	1	0.0376	TRUE	458	1351	185	561	0	FALSE	ACH-000661
WM1799_SKIN	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	5	1	0.44	0.0282	0.0094	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	WM1799_SKIN	0.44	1	0.0376	TRUE	465	1949	224	605	0	FALSE	ACH-000661
WM1799_SKIN	STAG3L1--WBSCR28	2	5	STAG3L1	1231	chr7:74988678:+	WBSCR28	15941	chr7:73279323:+	ONLY_REF_SPLICE	YES	71	1	0.09	0.88	0.0188	0.0471	STAG3L1->chr7:74988448-75024657:+,stromal_antigen_3-like_1_(pseudogene),WBSCR28->Williams-Beuren_syndrome_chromosome_region_28,chr7:73275489-73280223:+	WM1799_SKIN	0.09	0.88	0.0659	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	ADAM23--PARD3B	3	0	ADAM23	3837	chr2:207346032:+	PARD3B	67904	chr2:206480180:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	ADAM23->ADAM_metallopeptidase_domain_23,Oncogene{Bushman},chr2:207308263-207485851:+,PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta	WM1799_SKIN	1	1	0.0282	TRUE	0	0	0	2	0	TRUE	ACH-000661
WM1799_SKIN	MAP4--SMARCC1	3	0	MAP4	1507	chr3:48130263:-	SMARCC1	64525	chr3:47680270:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	{Klijn_CCL:Skin=1,Colo-Rectal=1},NEIGHBORS[68586],MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-	WM1799_SKIN	1	1	0.0282	FALSE	0	0	0	1	0	FALSE	ACH-000661
WM1799_SKIN	MT-ND5--MT-ND4	3	0	MT-ND5	2430	chrM:13766:+	MT-ND4	7105	chrM:12052:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0282	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	WM1799_SKIN	1	1	0.0282	FALSE	45	27	1	23	0	FALSE	ACH-000661
WM1799_SKIN	RP1-34H18.1--RP11-781A6.1	3	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	WM1799_SKIN	1	1	0.0282	TRUE	94	160	11	37	0	FALSE	ACH-000661
WM1799_SKIN	KIF4A--IGBP1	2	2	KIF4A	13168	chrX:69573657:+	IGBP1	34411	chrX:69366483:+	ONLY_REF_SPLICE	YES	96	89	0.04	0.04	0.0188	0.0188	KIF4A->chrX:69509879-69640682:+,kinesin_family_member_4A,IGBP1->chrX:69353299-69386174:+,immunoglobulin_(CD79A)_binding_protein_1	WM1799_SKIN	0.04	0.04	0.0376	TRUE	0	0	0	1	0	FALSE	ACH-000661
WM1799_SKIN	CTD-2023N9.1--CTD-2023N9.2	1	5	CTD-2023N9.1	3408	chr5:56792744:+	CTD-2023N9.2	11053	chr5:56910004:+	ONLY_REF_SPLICE	NO	9	1	0.4	0.86	0.0094	0.0471	NEIGHBORS[40603],CTD-2023N9.1->chr5:56690887-56829251:+,CTD-2023N9.2->chr5:56869854-56910168:+	WM1799_SKIN	0.4	0.86	0.0565	FALSE	0	0	0	7	0	FALSE	ACH-000661
WM1799_SKIN	RP11-444D3.1--SOX5	1	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	18	1	0.25	0.0094	0.0471	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	WM1799_SKIN	0.25	1	0.0565	TRUE	160	277	29	98	0	FALSE	ACH-000661
WM1799_SKIN	RP11-444D3.1--SOX5	1	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	14	1	0.3	0.0094	0.0471	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	WM1799_SKIN	0.3	1	0.0565	TRUE	274	363	69	150	0	FALSE	ACH-000661
WM1799_SKIN	ALS2--FAM169A	2	0	ALS2	1313	chr2:202645600:-	FAM169A	49780	chr5:74137504:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ALS2->ALS2,_alsin_Rho_guanine_nucleotide_exchange_factor,chr2:202565277-202645912:-,FAM169A->chr5:74073399-74162776:-,family_with_sequence_similarity_169_member_A	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	B3GALNT2--DAG1	2	0	B3GALNT2	3612	chr1:235657991:-	DAG1	29785	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	B3GALNT2->beta-1,3-N-acetylgalactosaminyltransferase_2,chr1:235613238-235667781:-,DAG1->chr3:49506146-49573048:+,dystroglycan_1	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	FRYL--CORO1C	2	0	FRYL	1245	chr4:48782095:-	CORO1C	87149	chr12:109095099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	IER2--USP22	2	0	IER2	1138	chr19:13261366:+	USP22	10614	chr17:20931987:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	IER2->Oncogene{Bushman},chr19:13261229-13265722:+,immediate_early_response_2,USP22->chr17:20902910-20947073:-,ubiquitin_specific_peptidase_22	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	KRBA2--PPP1R7	2	0	KRBA2	1812	chr17:8279218:-	PPP1R7	21825	chr2:242122062:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	KRBA2->KRAB-A_domain_containing_2,chr17:8271955-8280029:-,PPP1R7->chr2:242088991-242123067:+,protein_phosphatase_1_regulatory_subunit_7	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	LRCH1--ROCK1	2	0	LRCH1	6257	chr13:47255981:+	ROCK1	38964	chr18:18622196:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	LRCH1->chr13:47127303-47327175:+,leucine-rich_repeats_and_calponin_homology_(CH)_domain_containing_1,ROCK1->Rho_associated_coiled-coil_containing_protein_kinase_1,chr18:18526867-18691812:-	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	MED30--EIF3H	2	0	MED30	1341	chr8:118533292:+	EIF3H	17749	chr8:117671219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	MED30->chr8:118532952-118552501:+,mediator_complex_subunit_30,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	POLR3F--MFN1	2	0	POLR3F	8364	chr20:18462454:+	MFN1	26217	chr3:179096129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	POLR3F->chr20:18447771-18465287:+,polymerase_(RNA)_III_subunit_F,MFN1->chr3:179065480-179112719:+,mitofusin_1	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	RP11-141M1.3--STARD13	1	4	RP11-141M1.3	11074	chr13:33933602:-	STARD13	26750	chr13:33716510:-	ONLY_REF_SPLICE	YES	2	62	0.71	0.07	0.0094	0.0377	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	WM1799_SKIN	0.07	0.71	0.0471	FALSE	0	1	0	6	0	FALSE	ACH-000661
WM1799_SKIN	SCAMP1--LHFPL2	2	0	SCAMP1	1214	chr5:77656552:+	LHFPL2	31828	chr5:77860694:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	LOCAL_INVERSION:+:-:[4476],SCAMP1->chr5:77656339-77776562:+,secretory_carrier_membrane_protein_1,LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	ZNF738--RAB23	2	0	ZNF738	3429	chr19:21544660:+	RAB23	15336	chr6:57075243:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0188	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,RAB23->RAB23,_member_RAS_oncogene_family,chr6:57053607-57087078:-	WM1799_SKIN	1	1	0.0188	TRUE	0	0	0	1	0	TRUE	ACH-000661
WM1799_SKIN	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	40	0	0.07	1	0.0094	0.0188	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	WM1799_SKIN	0.07	1	0.0282	FALSE	164	806	69	479	0	FALSE	ACH-000661
WM1799_SKIN	HMCN1--FAM129A	1	1	HMCN1	1497	chr1:185704179:+	FAM129A	121742	chr1:184801096:-	ONLY_REF_SPLICE	YES	141	439	0.01	0	0.0094	0.0094	HMCN1->chr1:185703683-186160085:+,hemicentin_1,FAM129A->chr1:184759858-184943682:-,family_with_sequence_similarity_129_member_A	WM1799_SKIN	0	0.01	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000661
WM1799_SKIN	HNRNPH3--HERC4	1	1	HNRNPH3	2062	chr10:70091992:+	HERC4	22719	chr10:69797926:-	ONLY_REF_SPLICE	YES	335	57	0.01	0.03	0.0094	0.0094	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},HNRNPH3->chr10:70090931-70102948:+,heterogeneous_nuclear_ribonucleoprotein_H3,HERC4->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_4,chr10:69681665-69835105:-	WM1799_SKIN	0.01	0.03	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000661
WM1799_SKIN	PRMT2--S100B	1	1	PRMT2	2824	chr21:48056902:+	S100B	24017	chr21:48020288:-	ONLY_REF_SPLICE	YES	293	4879	0.01	0	0.0094	0.0094	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1},LOCAL_INVERSION:+:-:[29958],PRMT2->chr21:48055079-48085036:+,protein_arginine_methyltransferase_2,S100B->Oncogene{Bushman},S100_calcium_binding_protein_B,chr21:48018875-48025121:-	WM1799_SKIN	0	0.01	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000661
WM1799_SKIN	RHOA--DAG1	1	1	RHOA	2179	chr3:49449253:-	DAG1	21789	chr3:49547852:+	ONLY_REF_SPLICE	YES	1750	426	0	0	0.0094	0.0094	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[55715],RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,DAG1->chr3:49506146-49573048:+,dystroglycan_1	WM1799_SKIN	0	0	0.0188	FALSE	0	0	0	8	0	FALSE	ACH-000661
WM1799_SKIN	SETD5--STT3B	1	1	SETD5	1363	chr3:9439661:+	STT3B	39148	chr3:31617888:+	ONLY_REF_SPLICE	YES	27	90	0.07	0.02	0.0094	0.0094	NUCLCLUST,SETD5->SET_domain_containing_5,chr3:9439299-9520924:+,STT3B->STT3B,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr3:31574130-31679112:+	WM1799_SKIN	0.02	0.07	0.0188	TRUE	0	0	0	1	0	FALSE	ACH-000661
WM1799_SKIN	VPS8--VIM	1	1	VPS8	27024	chr3:184587316:+	VIM	70565	chr10:17277168:+	ONLY_REF_SPLICE	NO	35	9902	0.05	0	0.0094	0.0094	VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+,VIM->chr10:17270258-17279592:+,vimentin	WM1799_SKIN	0	0.05	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000661
8MGBA_CENTRAL_NERVOUS_SYSTEM	QKI--PACRG	388	236	QKI	9463	chr6:163899928:+	PACRG	44484	chr6:163735859:+	ONLY_REF_SPLICE	YES	240	27	0.72	0.96	4.1424	2.5196	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.72	0.96	6.662	TRUE	0	1	0	3	1	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	TMED9--RGS14	276	175	TMED9	1518	chr5:177019676:+	RGS14	9201	chr5:176792964:+	ONLY_REF_SPLICE	YES	2430	127	0.16	0.78	2.9467	1.8684	TMED9->chr5:177019159-177023125:+,transmembrane_p24_trafficking_protein_9,RGS14->chr5:176784838-176799602:+,regulator_of_G-protein_signaling_14	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.16	0.78	4.8151	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	EZH1--BRCA1	170	58	EZH1	9261	chr17:40872291:-	BRCA1	44339	chr17:41228631:-	ONLY_REF_SPLICE	YES	31	58	0.88	0.8	1.815	0.6192	EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,BRCA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_1,chr17:41196312-41277500:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.8	0.88	2.4342	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	QKI--PACRG	111	281	QKI	9463	chr6:163899928:+	PACRG	43367	chr6:163733811:+	ONLY_REF_SPLICE	YES	240	0	0.62	1	1.1851	3.0001	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.62	1	4.1852	TRUE	0	1	0	2	1	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC008079.9	165	16	AP003900.6	1122	chr21:11169841:+	AC008079.9	9069	chr22:18682508:-	ONLY_REF_SPLICE	YES	2	0	0.99	1	1.7616	0.1708	AP003900.6->chr21:11169720-11184046:+,AC008079.9->chr22:18660805-18688682:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.99	1	1.9324	TRUE	0	0	0	2	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	EIF4H--EXTL3	136	66	EIF4H	4732	chr7:73604248:+	EXTL3	24382	chr8:28573102:+	ONLY_REF_SPLICE	YES	707	34	0.22	0.86	1.452	0.7046	EIF4H->chr7:73588575-73611431:+,eukaryotic_translation_initiation_factor_4H,EXTL3->chr8:28457986-28613116:+,exostosin_like_glycosyltransferase_3	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.22	0.86	2.1566	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	TMED9--RGS14	68	192	TMED9	1518	chr5:177019676:+	RGS14	7977	chr5:176784847:+	INCL_NON_REF_SPLICE	YES	2430	0	0.1	1	0.726	2.0499	TMED9->chr5:177019159-177023125:+,transmembrane_p24_trafficking_protein_9,RGS14->chr5:176784838-176799602:+,regulator_of_G-protein_signaling_14	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.1	1	2.7759	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	QKI--PACRG	7	281	QKI	9463	chr6:163899928:+	PACRG	43363	chr6:163733807:+	INCL_NON_REF_SPLICE	YES	240	0	0.55	1	0.0747	3.0001	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.55	1	3.0748	TRUE	0	1	0	2	1	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	65	39	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.694	0.4164	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	1.1104	TRUE	508	994	45	981	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	QKI--PACRG	1	281	QKI	9463	chr6:163899928:+	PACRG	42138	chr6:163665972:+	ONLY_REF_SPLICE	YES	240	0	0.54	1	0.0107	3.0001	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.54	1	3.0108	TRUE	0	1	0	1	1	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	52	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5552	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.5552	TRUE	7	10	0	216	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	38	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	316	5	0.12	0.9	0.4057	0.0747	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.12	0.9	0.4804	TRUE	519	3926	326	965	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	EZH1--BRCA1	18	57	EZH1	9261	chr17:40872291:-	BRCA1	44342	chr17:41228628:-	ONLY_REF_SPLICE	YES	31	55	0.71	0.58	0.1922	0.6086	EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,BRCA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_1,chr17:41196312-41277500:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.58	0.71	0.8008	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	ADRBK1--KDM2A	22	28	ADRBK1	11413	chr11:67052797:+	KDM2A	29226	chr11:66995517:+	INCL_NON_REF_SPLICE	YES	352	102	0.12	0.33	0.2349	0.2989	LOCAL_REARRANGEMENT:+:[8323],ADRBK1->adrenergic,_beta,_receptor_kinase_1,chr11:67033881-67054027:+,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.12	0.33	0.5338	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	EIF4H--EXTL3	11	71	EIF4H	5120	chr7:73604636:+	EXTL3	24382	chr8:28573102:+	ONLY_REF_SPLICE	YES	737	34	0.1	0.71	0.1174	0.758	EIF4H->chr7:73588575-73611431:+,eukaryotic_translation_initiation_factor_4H,EXTL3->chr8:28457986-28613116:+,exostosin_like_glycosyltransferase_3	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.1	0.71	0.8754	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	ADRBK1--KDM2A	25	10	ADRBK1	11275	chr11:67052659:+	KDM2A	30344	chr11:66999037:+	ONLY_REF_SPLICE	YES	227	78	0.13	0.31	0.2669	0.1068	LOCAL_REARRANGEMENT:+:[8323],ADRBK1->adrenergic,_beta,_receptor_kinase_1,chr11:67033881-67054027:+,KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.13	0.31	0.3737	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC008079.9	18	27	AP003900.6	3299	chr21:11174002:+	AC008079.9	9069	chr22:18682508:-	ONLY_REF_SPLICE	YES	7	0	0.87	1	0.1922	0.2883	AP003900.6->chr21:11169720-11184046:+,AC008079.9->chr22:18660805-18688682:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.87	1	0.4805	TRUE	0	1	0	3	1	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	AUP1--EVA1A	20	16	AUP1	4222	chr2:74753845:-	EVA1A	15512	chr2:75720735:-	INCL_NON_REF_SPLICE	YES	0	141	1	0.2	0.2135	0.1708	AUP1->ancient_ubiquitous_protein_1,chr2:74753772-74757066:-,EVA1A->chr2:75696428-75796848:-,eva-1_homolog_A,_regulator_of_programmed_cell_death	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.2	1	0.3843	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	LRTOMT--RNF121	22	3	LRTOMT	1550	chr11:71791931:+	RNF121	28399	chr11:71705765:+	ONLY_REF_SPLICE	YES	9	210	0.74	0.11	0.2349	0.032	LOCAL_REARRANGEMENT:+:[82739],LRTOMT->chr11:71791382-71821828:+,leucine_rich_transmembrane_and_O-methyltransferase_domain_containing,RNF121->chr11:71639747-71708643:+,ring_finger_protein_121	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.11	0.74	0.2669	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	QKI--PACRG	3	70	QKI	7175	chr6:163876453:+	PACRG	44484	chr6:163735859:+	ONLY_REF_SPLICE	YES	225	27	0.24	0.73	0.032	0.7473	YOSHIHARA_TCGA_num_samples[BRCA:3|LUAD:1|OV:1],{Klijn_CCL:Breast=1,Brain=1},LOCAL_REARRANGEMENT:+:[98508],QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.24	0.73	0.7793	TRUE	0	0	0	3	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-1102P16.1--EYA1	16	13	RP11-1102P16.1	7994	chr8:72447979:-	EYA1	19218	chr8:72268746:-	ONLY_REF_SPLICE	YES	7	117	0.81	0.2	0.1708	0.1388	NEIGHBORS[41208],RP11-1102P16.1->chr8:72315675-72504260:-,EYA1->EYA_transcriptional_coactivator_and_phosphatase_1,chr8:72109668-72274467:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.2	0.81	0.3096	FALSE	1	26	0	4	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	TRIM23--AC003002.6	15	11	TRIM23	7459	chr5:64906688:-	AC003002.6	23611	chr19:57922248:+	ONLY_REF_SPLICE	YES	58	0	0.31	1	0.1601	0.1174	TRIM23->chr5:64885507-64921802:-,tripartite_motif_containing_23,AC003002.6->chr19:57901252-57931362:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.2775	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	EZH1--BRCA1	1	60	EZH1	10364	chr17:40871123:-	BRCA1	44339	chr17:41228631:-	ONLY_REF_SPLICE	YES	46	58	0.57	0.51	0.0107	0.6406	EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,BRCA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_1,chr17:41196312-41277500:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.51	0.57	0.6513	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	EZH1--BRCA1	1	59	EZH1	10364	chr17:40871123:-	BRCA1	44342	chr17:41228628:-	ONLY_REF_SPLICE	NO	46	55	0.57	0.52	0.0107	0.6299	EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,BRCA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_1,chr17:41196312-41277500:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.52	0.57	0.6406	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	USP4--AMT	11	15	USP4	5189	chr3:49363138:-	AMT	35340	chr3:49456584:-	INCL_NON_REF_SPLICE	YES	207	26	0.11	0.5	0.1174	0.1601	LOCAL_REARRANGEMENT:-:[76066],USP4->Oncogene{Bushman},chr3:49315264-49378145:-,ubiquitin_specific_peptidase_4,AMT->aminomethyltransferase,chr3:49454211-49460186:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.11	0.5	0.2775	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	5	37	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	0	0.88	1	0.0534	0.395	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.4484	FALSE	344	821	44	306	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	13	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.67	1	0.1388	0.0107	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.1495	FALSE	292	1546	117	613	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	10	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	76	95	0.2	0.17	0.1068	0.0961	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.17	0.2	0.2029	TRUE	267	562	48	632	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	12	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1281	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.1281	FALSE	13	9	0	364	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-1102P16.1--EYA1	8	15	RP11-1102P16.1	11923	chr8:72383093:-	EYA1	19218	chr8:72268746:-	ONLY_REF_SPLICE	YES	5	117	0.82	0.16	0.0854	0.1601	NEIGHBORS[41208],RP11-1102P16.1->chr8:72315675-72504260:-,EYA1->EYA_transcriptional_coactivator_and_phosphatase_1,chr8:72109668-72274467:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.16	0.82	0.2455	FALSE	1	26	0	4	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	SBNO2--FGF22	11	2	SBNO2	6949	chr19:1147308:-	FGF22	30811	chr19:643235:+	ONLY_REF_SPLICE	YES	161	0	0.07	1	0.1174	0.0214	SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),FGF22->chr19:639879-643703:+,fibroblast_growth_factor_22	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.1388	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	TRPM2--PKNOX1	10	6	TRPM2	22884	chr21:45833957:+	PKNOX1	42299	chr21:44427601:+	ONLY_REF_SPLICE	YES	7	74	0.7	0.18	0.1068	0.0641	TRPM2->chr21:45770046-45862964:+,transient_receptor_potential_cation_channel_subfamily_M_member_2,PKNOX1->Oncogene{Bushman},PBX/knotted_1_homeobox_1,chr21:44394620-44453691:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.18	0.7	0.1709	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RPS6--B2M	11	1	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	5041	0	0	1	0.1174	0.0107	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0	1	0.1281	TRUE	0	0	0	28	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	EZH1--BRCA1	3	24	EZH1	10364	chr17:40871123:-	BRCA1	45466	chr17:41226538:-	ONLY_REF_SPLICE	YES	46	51	0.37	0.35	0.032	0.2562	EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,BRCA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_1,chr17:41196312-41277500:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.35	0.37	0.2882	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	3	23	MT-CO3	1220	chrM:9426:+	MT-ATP6	5072	chrM:8814:+	INCL_NON_REF_SPLICE	NO	4	16	0.87	0.62	0.032	0.2456	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.62	0.87	0.2776	FALSE	189	492	56	216	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	7	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0747	0.0747	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.93	1	0.1494	FALSE	515	4851	409	746	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	18	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	7456	0	0	1	0.0427	0.1922	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	8MGBA_CENTRAL_NERVOUS_SYSTEM	0	1	0.2349	FALSE	328	800	43	304	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	8	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0854	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0854	TRUE	347	1186	183	220	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	USP4--AMT	7	4	USP4	5175	chr3:49363152:-	AMT	36518	chr3:49455406:-	ONLY_REF_SPLICE	YES	201	26	0.05	0.3	0.0747	0.0427	LOCAL_REARRANGEMENT:-:[76066],USP4->Oncogene{Bushman},chr3:49315264-49378145:-,ubiquitin_specific_peptidase_4,AMT->aminomethyltransferase,chr3:49454211-49460186:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.05	0.3	0.1174	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC008079.9	2	23	AP003900.6	3299	chr21:11174002:+	AC008079.9	9596	chr22:18681981:-	ONLY_REF_SPLICE	YES	7	2	0.78	0.93	0.0214	0.2456	AP003900.6->chr21:11169720-11184046:+,AC008079.9->chr22:18660805-18688682:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.78	0.93	0.267	TRUE	0	1	0	3	1	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	5	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	77	94	0.16	0.14	0.0534	0.1068	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.14	0.16	0.1602	TRUE	267	562	48	632	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTG1	7	1	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	8491	1	0	0.89	0.0747	0.0107	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0	0.89	0.0854	FALSE	0	0	0	64	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	7	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	8662	8	0	0.5	0.0747	0.0107	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	8MGBA_CENTRAL_NERVOUS_SYSTEM	0	0.5	0.0854	FALSE	230	193	14	283	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC008079.9	2	20	AP003900.6	2187	chr21:11172043:+	AC008079.9	9069	chr22:18682508:-	ONLY_REF_SPLICE	YES	8	0	0.73	1	0.0214	0.2135	AP003900.6->chr21:11169720-11184046:+,AC008079.9->chr22:18660805-18688682:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.73	1	0.2349	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0747	FALSE	13	9	0	364	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	7	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0747	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0747	TRUE	458	1351	185	561	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-476K15.1--CTD-2015H3.2	4	6	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10183	chr18:1779897:+	INCL_NON_REF_SPLICE	YES	5	0	0.67	1	0.0427	0.0641	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.1068	FALSE	0	46	0	73	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	4	5	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0.0534	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0961	FALSE	189	492	56	216	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	5	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.55	1	0.0534	0.0107	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.55	1	0.0641	FALSE	189	492	56	216	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10476	64	0	0.11	0.0427	0.0427	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	8MGBA_CENTRAL_NERVOUS_SYSTEM	0	0.11	0.0854	FALSE	231	217	16	283	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RCC1--TAF12	5	0	RCC1	2175	chr1:28834672:+	TAF12	21394	chr1:28948677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0534	0	LOCAL_INVERSION:+:-:[50023],RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0534	TRUE	0	1	0	2	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	3	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.032	0.0854	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.1174	FALSE	407	2205	196	549	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	ZNF567--EID2B	4	4	ZNF567	6932	chr19:37203769:+	EID2B	17422	chr19:40022153:-	ONLY_REF_SPLICE	YES	18	6	0.31	0.57	0.0427	0.0427	ZNF567->chr19:37178514-37218603:+,zinc_finger_protein_567,EID2B->EP300_interacting_inhibitor_of_differentiation_2B,chr19:40021630-40023494:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.31	0.57	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	COL1A1--NPM1	4	2	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	3977	1	0	0.86	0.0427	0.0214	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	8MGBA_CENTRAL_NERVOUS_SYSTEM	0	0.86	0.0641	FALSE	0	0	0	31	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	LUZP1--CTB-32O4.2	4	2	LUZP1	2577	chr1:23495259:-	CTB-32O4.2	20994	chr19:29706188:+	ONLY_REF_SPLICE	YES	3	6	0.67	0.5	0.0427	0.0214	LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1,CTB-32O4.2->chr19:29704142-29706722:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.5	0.67	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-476K15.1--CTD-2015H3.2	3	6	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	5	0	0.64	1	0.032	0.0641	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.64	1	0.0961	FALSE	0	46	0	73	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	4	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	8725	12	0	0.29	0.0427	0.0107	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	8MGBA_CENTRAL_NERVOUS_SYSTEM	0	0.29	0.0534	FALSE	230	198	14	283	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ATP8	3	5	MT-ND4	2326	chrM:12085:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	1	87	0.89	0.08	0.032	0.0534	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.08	0.89	0.0854	FALSE	209	205	15	279	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0427	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0427	TRUE	0	0	0	434	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-1102P16.1--EYA1	2	8	RP11-1102P16.1	7994	chr8:72447979:-	EYA1	21396	chr8:72246409:-	ONLY_REF_SPLICE	YES	7	129	0.59	0.07	0.0214	0.0854	NEIGHBORS[41208],RP11-1102P16.1->chr8:72315675-72504260:-,EYA1->EYA_transcriptional_coactivator_and_phosphatase_1,chr8:72109668-72274467:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.07	0.59	0.1068	FALSE	0	24	0	3	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-114H23.1--RP11-114H23.2	3	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0.0214	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0534	FALSE	81	155	12	160	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-307P5.1--SASH1	3	2	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	10	1	0.33	0.032	0.0214	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.0534	TRUE	0	2	0	37	2	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	3	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	19	0	0.17	1	0.032	0.0107	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.17	1	0.0427	FALSE	125	705	46	456	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	3	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.032	0.0107	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.0427	TRUE	254	575	65	124	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-ND2	3	0	MT-ATP6	1098	chrM:8624:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.032	FALSE	177	96	13	17	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-ND2	3	0	MT-ATP6	1140	chrM:8666:+	MT-ND2	5395	chrM:5183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:+:[3016],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.032	FALSE	177	96	13	17	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-254I22.1--CTD-2337A12.1	3	0	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.032	TRUE	6	15	3	35	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	USP4--AMT	2	3	USP4	5175	chr3:49363152:-	AMT	36773	chr3:49455151:-	ONLY_REF_SPLICE	YES	201	33	0.02	0.13	0.0214	0.032	LOCAL_REARRANGEMENT:-:[76066],USP4->Oncogene{Bushman},chr3:49315264-49378145:-,ubiquitin_specific_peptidase_4,AMT->aminomethyltransferase,chr3:49454211-49460186:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.02	0.13	0.0534	TRUE	0	0	0	1	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	23	0	0.15	1	0.0214	0.0214	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.0428	FALSE	164	806	69	479	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RILP--SMYD4	2	1	RILP	1878	chr17:1552494:-	SMYD4	12591	chr17:1715409:-	ONLY_REF_SPLICE	YES	10	36	0.23	0.08	0.0214	0.0107	RILP->Rab_interacting_lysosomal_protein,chr17:1549444-1553371:-,SMYD4->SET_and_MYND_domain_containing_4,chr17:1682779-1733928:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.08	0.23	0.0321	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	SCAMP1--AP3B1	2	1	SCAMP1	1214	chr5:77656552:+	AP3B1	27243	chr5:77512061:-	ONLY_REF_SPLICE	YES	128	99	0.02	0.03	0.0214	0.0107	GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[65760],SCAMP1->chr5:77656339-77776562:+,secretory_carrier_membrane_protein_1,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.0321	TRUE	0	1	0	1	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	SCARB1--UBC	2	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	354	181	0.01	0.02	0.0214	0.0107	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0321	FALSE	55	66	6	101	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	CALM2--SOCS5	2	0	CALM2	1161	chr2:47403580:-	SOCS5	16436	chr2:46985658:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,SOCS5->chr2:46926091-46990268:+,suppressor_of_cytokine_signaling_5	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	CHRFAM7A--EIF4G3	2	0	CHRFAM7A	5236	chr15:30673906:-	EIF4G3	50509	chr1:21187010:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CHRFAM7A->CHRNA7_(exons_5-10)_and_FAM7A_(exons_A-E)_fusion,chr15:30653443-30686052:-,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	CPSF4--ARPC1A	2	0	CPSF4	3909	chr7:99042462:+	ARPC1A	16077	chr7:98930948:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	LOCAL_REARRANGEMENT:+:[50758],CPSF4->chr7:99036545-99054994:+,cleavage_and_polyadenylation_specific_factor_4,ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0214	TRUE	0	1	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	CPSF6--IVNS1ABP	2	0	CPSF6	11046	chr12:69656342:+	IVNS1ABP	26367	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=2},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0214	TRUE	0	0	0	3	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	GNB1--UBB	2	0	GNB1	1237	chr1:1822259:-	UBB	23081	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-,UBB->chr17:16284112-16286059:+,ubiquitin_B	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	MATR3--CTNNA1	2	0	MATR3	9772	chr5:138629494:+	CTNNA1	45982	chr5:138145727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0214	TRUE	3	14	0	14	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	NLN--CCDC94	2	0	NLN	16272	chr5:65108218:+	CCDC94	32517	chr19:4249225:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	NLN->chr5:65018023-65167553:+,neurolysin,CCDC94->chr19:4247076-4269087:+,coiled-coil_domain_containing_94	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-51M18.1--FAM192A	2	0	RP11-51M18.1	1312	chr8:84316304:+	FAM192A	12513	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	RP11-51M18.1->chr8:84315993-84321135:+,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	SENP2--FKBP10	2	0	SENP2	3765	chr3:185307957:+	FKBP10	32091	chr17:39977199:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SENP2->SUMO1/sentrin/SMT3_specific_peptidase_2,chr3:185300284-185351339:+,FKBP10->FK506_binding_protein_10,chr17:39968932-39979465:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	ACTN4--RYR1	1	3	ACTN4	1259	chr19:39138547:+	RYR1	82929	chr19:39018287:+	ONLY_REF_SPLICE	NO	2292	0	0	1	0.0107	0.032	LOCAL_REARRANGEMENT:+:[60085],ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	8MGBA_CENTRAL_NERVOUS_SYSTEM	0	1	0.0427	FALSE	0	0	0	1	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	ACTN4--RYR1	1	3	ACTN4	1259	chr19:39138547:+	RYR1	82275	chr19:39017633:+	ONLY_REF_SPLICE	NO	2292	0	0	1	0.0107	0.032	LOCAL_REARRANGEMENT:+:[60085],ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	8MGBA_CENTRAL_NERVOUS_SYSTEM	0	1	0.0427	FALSE	0	0	0	1	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	TMEM67--FAM92A1	1	3	TMEM67	25800	chr8:94811986:+	FAM92A1	52601	chr8:94738622:+	ONLY_REF_SPLICE	NO	91	77	0.04	0.05	0.0107	0.032	LOCAL_REARRANGEMENT:+:[23317],TMEM67->chr8:94767072-94831462:+,transmembrane_protein_67,FAM92A1->chr8:94710789-94743755:+,family_with_sequence_similarity_92_member_A1	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.04	0.05	0.0427	TRUE	0	0	0	1	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	LRTOMT--RNF121	1	2	LRTOMT	1550	chr11:71791931:+	RNF121	29120	chr11:71706486:+	ONLY_REF_SPLICE	YES	9	275	0.25	0.01	0.0107	0.0214	LOCAL_REARRANGEMENT:+:[82739],LRTOMT->chr11:71791382-71821828:+,leucine_rich_transmembrane_and_O-methyltransferase_domain_containing,RNF121->chr11:71639747-71708643:+,ring_finger_protein_121	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.01	0.25	0.0321	FALSE	0	0	0	1	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	ARFGEF1--SNHG6	1	1	ARFGEF1	1514	chr8:68255399:-	SNHG6	49503	chr8:67834349:-	ONLY_REF_SPLICE	YES	56	368	0.03	0.01	0.0107	0.0107	ARFGEF1->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_1,chr8:68085747-68255912:-,SNHG6->chr8:67833919-67838633:-,small_nucleolar_RNA_host_gene_6	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-722M1.1--RP11-431M7.2	1	1	RP11-722M1.1	7110	chr4:36500049:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	NO	13	0	0.13	1	0.0107	0.0107	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.13	1	0.0214	TRUE	0	1	0	4	1	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	RP11-722M1.1--RP11-431M7.2	1	1	RP11-722M1.1	4366	chr4:36584279:-	RP11-431M7.2	12957	chr4:36313401:-	ONLY_REF_SPLICE	YES	31	0	0.06	1	0.0107	0.0107	RP11-722M1.1->chr4:36498159-36643522:-,RP11-431M7.2->chr4:36312812-36394032:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0214	TRUE	0	1	0	4	1	TRUE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	SCAMP1--AP3B1	1	1	SCAMP1	1214	chr5:77656552:+	AP3B1	28426	chr5:77477486:-	ONLY_REF_SPLICE	YES	128	162	0.02	0.01	0.0107	0.0107	GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[65760],SCAMP1->chr5:77656339-77776562:+,secretory_carrier_membrane_protein_1,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	SNX8--MAD1L1	1	1	SNX8	3400	chr7:2353963:-	MAD1L1	53150	chr7:1997354:-	ONLY_REF_SPLICE	NO	25	102	0.07	0.02	0.0107	0.0107	NEIGHBORS[18527],SNX8->chr7:2291405-2393953:-,sorting_nexin_8,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.02	0.07	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	SNX8--MAD1L1	1	1	SNX8	3400	chr7:2353963:-	MAD1L1	61693	chr7:1855864:-	ONLY_REF_SPLICE	YES	25	108	0.07	0.02	0.0107	0.0107	NEIGHBORS[18527],SNX8->chr7:2291405-2393953:-,sorting_nexin_8,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.02	0.07	0.0214	FALSE	0	0	0	6	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	USP4--AMT	1	1	USP4	4048	chr3:49365119:-	AMT	36773	chr3:49455151:-	ONLY_REF_SPLICE	YES	223	33	0.01	0.06	0.0107	0.0107	LOCAL_REARRANGEMENT:-:[76066],USP4->Oncogene{Bushman},chr3:49315264-49378145:-,ubiquitin_specific_peptidase_4,AMT->aminomethyltransferase,chr3:49454211-49460186:-	8MGBA_CENTRAL_NERVOUS_SYSTEM	0.01	0.06	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000137
8MGBA_CENTRAL_NERVOUS_SYSTEM	YWHAE--GNAS	1	1	YWHAE	1332	chr17:1303341:-	GNAS	30056	chr20:57470667:+	ONLY_REF_SPLICE	YES	2792	682	0	0	0.0107	0.0107	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Colon_-_Transverse=1},YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	8MGBA_CENTRAL_NERVOUS_SYSTEM	0	0	0.0214	FALSE	0	6	0	6	1	FALSE	ACH-000137
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--AC096579.7	53	10	IGKV3-20	1101	chr2:89442543:-	AC096579.7	7309	chr2:89157196:-	ONLY_REF_SPLICE	YES	6	4	0.91	0.94	0.9467	0.1786	GTEx_FI:{Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Blood=[count:2=pct:1.1],Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4],Thyroid=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6]},IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,AC096579.7->chr2:89130700-89165653:-	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.94	1.1253	TRUE	9	277	13	4	0	FALSE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COX16--TMEM106B	20	10	COX16	1213	chr14:70826236:-	TMEM106B	11940	chr7:12254435:+	ONLY_REF_SPLICE	YES	30	6	0.5	0.83	0.3573	0.1786	COX16->COX16_cytochrome_c_oxidase_assembly_homolog,chr14:70791798-70826448:-,TMEM106B->chr7:12250867-12282993:+,transmembrane_protein_106B	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.83	0.5359	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	12	3	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	3	0	0.83	1	0.2144	0.0536	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.268	TRUE	0	5	0	45	5	FALSE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARFIP1--FNDC3B	10	9	ARFIP1	1290	chr4:153701378:+	FNDC3B	25012	chr3:171830242:+	ONLY_REF_SPLICE	YES	1	6	0.95	0.76	0.1786	0.1608	ARFIP1->ADP_ribosylation_factor_interacting_protein_1,chr4:153701089-153839615:+,FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.95	0.3394	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	9	4	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1608	0.0715	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2323	TRUE	508	994	45	981	0	FALSE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EHD3--SLC25A6	8	0	EHD3	7910	chr2:31489638:+	SLC25A6	18299	chrX:1505478:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1429	0	EHD3->EH_domain_containing_3,chr2:31456880-31492313:+,SLC25A6->chrX:1505045-1511617:-,chrY:1455045-1461617:-,solute_carrier_family_25_member_6	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1429	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	6	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1072	0.0179	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1251	FALSE	515	4851	409	746	0	FALSE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FNDC3B--ARFIP1	5	1	FNDC3B	1144	chr3:171757561:+	ARFIP1	51680	chr4:153750777:+	ONLY_REF_SPLICE	YES	5	1	0.55	0.86	0.0893	0.0179	FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,ARFIP1->ADP_ribosylation_factor_interacting_protein_1,chr4:153701089-153839615:+	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.86	0.1072	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	5	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	29	2	0.17	0.75	0.0893	0.0179	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.75	0.1072	TRUE	519	3926	326	965	0	FALSE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	3	0	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0536	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	0	3	0	38	3	FALSE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAP1--RPS28	3	0	BAP1	7745	chr3:52437622:-	RPS28	13692	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	BAP1->ArcherDX_panel,BRCA1_associated_protein_1,FoundationOne_panel,Oncogene{Bushman},chr3:52435029-52444366:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ2A--HMGN2	3	0	BAZ2A	15686	chr12:56997370:-	HMGN2	26742	chr1:26799006:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,HMGN2->chr1:26798941-26802463:+,high_mobility_group_nucleosomal_binding_domain_2	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FRS2--ZMYM2	3	0	FRS2	6634	chr12:69925836:+	ZMYM2	51023	chr13:20656156:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0536	0	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,ZMYM2->Oncogene{Bushman},chr13:20532810-20665968:+,zinc_finger_MYM-type_containing_2	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTHFD2--HLA-DRA	3	0	MTHFD2	9060	chr2:74441386:+	HLA-DRA	17316	chr6:32410983:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	MTHFD2->chr2:74425689-74444692:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_2,_methenyltetrahydrofolate_cyclohydrolase,HLA-DRA->chr6:32407619-32412823:+,major_histocompatibility_complex,_class_II,_DR_alpha	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	FALSE	0	0	0	1	0	FALSE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRD1--HNRNPF	3	0	NRD1	17272	chr1:52280448:-	HNRNPF	43903	chr10:43881586:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	NRD1->chr1:52254863-52344477:-,HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS14--KIAA1429	3	0	RPS14	3089	chr5:149827231:-	KIAA1429	17272	chr8:95541439:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	RPS14->chr5:149822753-149829319:-,ribosomal_protein_S14,KIAA1429->KIAA1429,chr8:95499921-95565757:-	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TGFB1--NELFE	3	0	TGFB1	1236	chr19:41859581:-	NELFE	18053	chr6:31922395:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1,NELFE->chr6:31919864-31926887:-,negative_elongation_factor_complex_member_E	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TJP1--ARCN1	3	0	TJP1	22842	chr15:30020142:-	ARCN1	45747	chr11:118454599:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	TJP1->chr15:29991571-30261068:-,tight_junction_protein_1,ARCN1->archain_1,chr11:118443105-118473748:+	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AIMP2--CHAF1A	2	0	AIMP2	1254	chr7:6049129:+	CHAF1A	15075	chr19:4422563:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	AIMP2->aminoacyl_tRNA_synthetase_complex-interacting_multifunctional_protein_2,chr7:6048876-6063465:+,CHAF1A->chr19:4402659-4445015:+,chromatin_assembly_factor_1_subunit_A	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	2	0	AP003900.6	1122	chr21:11169841:+	AC011718.2	15042	chr22:20643785:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	2	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP17--DCTN5	2	0	ARHGAP17	4834	chr16:24988536:-	DCTN5	39936	chr16:23669828:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	ARHGAP17->Rho_GTPase_activating_protein_17,chr16:24930706-25026987:-,DCTN5->chr16:23652713-23681195:+,dynactin_subunit_5	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSNK1D--NDUFS6	2	0	CSNK1D	1426	chr17:80231182:-	NDUFS6	26123	chr5:1814453:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-,NDUFS6->NADH:ubiquinone_oxidoreductase_subunit_S6,chr5:1801514-1816719:+	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FANCI--YWHAQ	2	0	FANCI	1119	chr15:89787298:+	YWHAQ	44822	chr2:9731644:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KDM2A--XPOT	2	0	KDM2A	2906	chr11:66888829:+	XPOT	36347	chr12:64803742:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A,XPOT->chr12:64798130-64844907:+,exportin_for_tRNA	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LMAN2--BAG6	2	0	LMAN2	5644	chr5:176761285:-	BAG6	20735	chr6:31609005:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	LMAN2->chr5:176758563-176778853:-,lectin,_mannose_binding_2,BAG6->BCL2_associated_athanogene_6,chr6:31606805-31620482:-	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	3	14	2	43	0	FALSE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFA8--STRBP	2	0	NDUFA8	1193	chr9:124921906:-	STRBP	27906	chr9:125898794:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	NDUFA8->NADH:ubiquinone_oxidoreductase_subunit_A8,chr9:124894745-124922098:-,STRBP->chr9:125871779-126030855:-,spermatid_perinuclear_RNA_binding_protein	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2J3--SCG5	2	0	POLR2J3	5847	chr7:102207444:-	SCG5	19709	chr15:32935787:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	POLR2J3->chr7:102178365-102213103:-,polymerase_(RNA)_II_subunit_J3,SCG5->chr15:32933877-32989299:+,secretogranin_V	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRDM5--RP11-366F6.2	2	0	PRDM5	11780	chr4:121737608:-	RP11-366F6.2	39893	chrX:151073261:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	PRDM5->PR_domain_5,chr4:121606074-121844025:-,RP11-366F6.2->chrX:151072903-151082440:-	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-435B5.4--KANSL1	2	0	RP11-435B5.4	2843	chr1:143465380:-	KANSL1	24756	chr17:44249598:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	RP11-435B5.4->chr1:143354963-143467632:-,KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-529K1.2--ATXN7	2	0	RP11-529K1.2	3850	chr16:70367723:-	ATXN7	23833	chr3:63976414:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	RP11-529K1.2->chr16:70349543-70380650:-,ATXN7->ataxin_7,chr3:63850233-63989138:+	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCFD2--CPT2	2	0	SCFD2	5445	chr4:54139993:-	CPT2	21644	chr1:53678936:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,CPT2->carnitine_palmitoyltransferase_2,chr1:53662101-53679869:+	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAGAP--RALY	2	0	TAGAP	6282	chr6:159460146:-	RALY	16482	chr20:32619328:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	TAGAP->T-cell_activation_RhoGTPase_activating_protein,chr6:159455500-159466184:-,RALY->RALY_heterogeneous_nuclear_ribonucleoprotein,chr20:32581452-32696114:+	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMMDC1--COPB2	2	0	TIMMDC1	6578	chr3:119236162:+	COPB2	33056	chr3:139077113:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	TIMMDC1->chr3:119217379-119243937:+,translocase_of_inner_mitochondrial_membrane_domain_containing_1,COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TM9SF2--CLYBL	2	0	TM9SF2	18522	chr13:100207901:+	CLYBL	26104	chr13:100425078:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	NEIGHBORS[42659],TM9SF2->chr13:100153671-100216260:+,transmembrane_9_superfamily_member_2,CLYBL->chr13:100258919-100549387:+,citrate_lyase_beta_like	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	FALSE	0	0	0	2	0	FALSE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VAPA--ANKRD12	2	0	VAPA	1334	chr18:9914332:+	ANKRD12	37033	chr18:9254209:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,ANKRD12->ankyrin_repeat_domain_12,chr18:9136226-9285983:+	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XPR1--FCRL5	2	0	XPR1	7223	chr1:180780624:+	FCRL5	42200	chr1:157494347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,FCRL5->Fc_receptor_like_5,Oncogene{Bushman},chr1:157483167-157522310:-	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0.0536	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0715	FALSE	407	2205	196	549	0	FALSE	ACH-000626
U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPESP1--INTS1	1	1	SPESP1	1097	chr15:69110656:+	INTS1	21527	chr7:1529318:-	ONLY_REF_SPLICE	YES	0	17	1	0.11	0.0179	0.0179	SPESP1->chr15:69110560-69239150:+,sperm_equatorial_segment_protein_1,INTS1->chr7:1509913-1545489:-,integrator_complex_subunit_1	U266B1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-000626
A204_SOFT_TISSUE	TIMM23B--LINC00843	71	40	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9979	0.5622	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	A204_SOFT_TISSUE	0.99	1	1.5601	TRUE	508	994	45	981	0	FALSE	ACH-000201
A204_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	52	78	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	13	2	0.91	0.98	0.7309	1.0963	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A204_SOFT_TISSUE	0.91	0.98	1.8272	FALSE	407	2205	196	549	0	FALSE	ACH-000201
A204_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	52	50	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	13	9	0.89	0.92	0.7309	0.7027	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A204_SOFT_TISSUE	0.89	0.92	1.4336	FALSE	515	4851	409	746	0	FALSE	ACH-000201
A204_SOFT_TISSUE	TIMM23--RP11-464F9.1	44	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	241	3	0.17	0.94	0.6184	0.0562	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	A204_SOFT_TISSUE	0.17	0.94	0.6746	TRUE	519	3926	326	965	0	FALSE	ACH-000201
A204_SOFT_TISSUE	KANSL1--ARL17B	35	11	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	28	115	0.62	0.29	0.4919	0.1546	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	A204_SOFT_TISSUE	0.29	0.62	0.6465	TRUE	181	1564	124	196	0	FALSE	ACH-000201
A204_SOFT_TISSUE	MT-TA--MT-TC	34	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4779	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A204_SOFT_TISSUE	1	1	0.4779	FALSE	462	80	0	856	0	FALSE	ACH-000201
A204_SOFT_TISSUE	PAK2--PIGX	25	23	PAK2	1301	chr3:196467028:+	PIGX	27705	chr3:196443729:+	ONLY_REF_SPLICE	YES	52	10	0.48	0.83	0.3514	0.3233	LOCAL_REARRANGEMENT:+:[3850],PAK2->chr3:196466728-196559518:+,p21_(RAC1)_activated_kinase_2,PIGX->chr3:196366646-196462878:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_X	A204_SOFT_TISSUE	0.48	0.83	0.6747	TRUE	0	0	0	1	0	TRUE	ACH-000201
A204_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	6	85	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	2	0.98	0.98	0.0843	1.1947	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A204_SOFT_TISSUE	0.98	0.98	1.279	FALSE	192	492	57	212	0	FALSE	ACH-000201
A204_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	4	78	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	13	0	0.86	1	0.0562	1.0963	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A204_SOFT_TISSUE	0.86	1	1.1525	FALSE	275	511	55	178	0	FALSE	ACH-000201
A204_SOFT_TISSUE	MT-ND6--MT-TE	21	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2952	0.0281	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A204_SOFT_TISSUE	1	1	0.3233	FALSE	499	1288	110	792	0	FALSE	ACH-000201
A204_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	4	57	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	9	0.97	0.87	0.0562	0.8011	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A204_SOFT_TISSUE	0.87	0.97	0.8573	FALSE	467	2173	244	435	0	FALSE	ACH-000201
A204_SOFT_TISSUE	MT-ND6--MT-TE	13	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1827	0.0141	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A204_SOFT_TISSUE	1	1	0.1968	FALSE	499	1288	110	792	0	FALSE	ACH-000201
A204_SOFT_TISSUE	MT-ND6--MT-TE	9	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1265	0.0281	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A204_SOFT_TISSUE	1	1	0.1546	FALSE	499	1288	110	792	0	FALSE	ACH-000201
A204_SOFT_TISSUE	PAK2--PIGX	7	10	PAK2	1301	chr3:196467028:+	PIGX	30982	chr3:196449286:+	ONLY_REF_SPLICE	YES	52	28	0.25	0.38	0.0984	0.1405	LOCAL_REARRANGEMENT:+:[3850],PAK2->chr3:196466728-196559518:+,p21_(RAC1)_activated_kinase_2,PIGX->chr3:196366646-196462878:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_X	A204_SOFT_TISSUE	0.25	0.38	0.2389	TRUE	0	0	0	1	0	TRUE	ACH-000201
A204_SOFT_TISSUE	MT-TA--MT-TC	8	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1124	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A204_SOFT_TISSUE	1	1	0.1124	FALSE	462	80	0	856	0	FALSE	ACH-000201
A204_SOFT_TISSUE	KCNMA1--DLG5	7	3	KCNMA1	2331	chr10:79397023:-	DLG5	63557	chr10:79628955:-	ONLY_REF_SPLICE	YES	363	41	0.03	0.2	0.0984	0.0422	KCNMA1->chr10:78629359-79398353:-,potassium_calcium-activated_channel_subfamily_M_alpha_1,DLG5->chr10:79550549-79686378:-,discs_large_homolog_5	A204_SOFT_TISSUE	0.03	0.2	0.1406	TRUE	0	0	0	1	0	FALSE	ACH-000201
A204_SOFT_TISSUE	MT-ND6--MT-TE	5	3	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0703	0.0422	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A204_SOFT_TISSUE	1	1	0.1125	FALSE	499	1288	110	792	0	FALSE	ACH-000201
A204_SOFT_TISSUE	NRG1--NRG1-IT1	4	6	NRG1	2344	chr8:31498245:+	NRG1-IT1	30006	chr8:31886895:+	ONLY_REF_SPLICE	YES	13	0	0.43	1	0.0562	0.0843	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+	A204_SOFT_TISSUE	0.43	1	0.1405	TRUE	1	0	0	3	0	TRUE	ACH-000201
A204_SOFT_TISSUE	FGFR2--COL14A1	5	1	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0703	0.0141	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	A204_SOFT_TISSUE	1	1	0.0844	TRUE	0	0	0	32	0	FALSE	ACH-000201
A204_SOFT_TISSUE	SCARB1--UBC	5	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	1774	94	0	0.06	0.0703	0.0141	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	A204_SOFT_TISSUE	0	0.06	0.0844	FALSE	55	66	6	101	0	FALSE	ACH-000201
A204_SOFT_TISSUE	NRG1--NRG1-IT2	4	4	NRG1	2344	chr8:31498245:+	NRG1-IT2	31143	chr8:32144617:+	ONLY_REF_SPLICE	YES	13	0	0.38	1	0.0562	0.0562	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT2->chr8:32028898-32145082:+	A204_SOFT_TISSUE	0.38	1	0.1124	TRUE	0	2	0	3	2	TRUE	ACH-000201
A204_SOFT_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A204_SOFT_TISSUE	1	1	0.0562	FALSE	499	1288	110	792	0	FALSE	ACH-000201
A204_SOFT_TISSUE	MT-ND6--MT-TE	3	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0.0422	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A204_SOFT_TISSUE	1	1	0.0844	FALSE	499	1288	110	792	0	FALSE	ACH-000201
A204_SOFT_TISSUE	ATN1--ENO1	3	0	ATN1	5734	chr12:7045589:+	ENO1	14564	chr1:8938672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	ATN1->atrophin_1,chr12:7033626-7051484:+,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1	A204_SOFT_TISSUE	1	1	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000201
A204_SOFT_TISSUE	FAM118A--CRH	3	0	FAM118A	5582	chr22:45718307:+	CRH	21239	chr8:67090598:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	FAM118A->chr22:45704849-45737836:+,family_with_sequence_similarity_118_member_A,CRH->chr8:67088620-67090960:-,corticotropin_releasing_hormone	A204_SOFT_TISSUE	1	1	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000201
A204_SOFT_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A204_SOFT_TISSUE	1	1	0.0422	FALSE	499	1288	110	792	0	FALSE	ACH-000201
A204_SOFT_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A204_SOFT_TISSUE	1	1	0.0422	FALSE	462	80	0	856	0	FALSE	ACH-000201
A204_SOFT_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A204_SOFT_TISSUE	1	1	0.0422	FALSE	462	80	0	856	0	FALSE	ACH-000201
A204_SOFT_TISSUE	NRG1--NRG1-IT1	2	4	NRG1	2344	chr8:31498245:+	NRG1-IT1	37780	chr8:31996731:+	ONLY_REF_SPLICE	YES	13	0	0.32	1	0.0281	0.0562	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+	A204_SOFT_TISSUE	0.32	1	0.0843	TRUE	0	3	0	4	3	TRUE	ACH-000201
A204_SOFT_TISSUE	RP11-680G10.1--GSE1	2	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.5	0.0281	0.0422	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A204_SOFT_TISSUE	0.5	1	0.0703	TRUE	458	1351	185	561	0	FALSE	ACH-000201
A204_SOFT_TISSUE	RP11-680G10.1--GSE1	2	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	15	1	0.21	0.0281	0.0281	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A204_SOFT_TISSUE	0.21	1	0.0562	TRUE	465	1949	224	605	0	FALSE	ACH-000201
A204_SOFT_TISSUE	RLF--MYCL	2	0	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	A204_SOFT_TISSUE	1	1	0.0281	TRUE	0	0	0	10	0	TRUE	ACH-000201
A204_SOFT_TISSUE	UBE2T--GYS1	2	0	UBE2T	1086	chr1:202311023:-	GYS1	16570	chr19:49481414:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0281	0	UBE2T->chr1:202300785-202311108:-,ubiquitin_conjugating_enzyme_E2_T,GYS1->chr19:49471382-49496567:-,glycogen_synthase_1	A204_SOFT_TISSUE	1	1	0.0281	TRUE	0	0	0	1	0	TRUE	ACH-000201
A204_SOFT_TISSUE	KCNMA1--DLG5	1	2	KCNMA1	2331	chr10:79397023:-	DLG5	64656	chr10:79616650:-	ONLY_REF_SPLICE	YES	363	53	0.01	0.05	0.0141	0.0281	KCNMA1->chr10:78629359-79398353:-,potassium_calcium-activated_channel_subfamily_M_alpha_1,DLG5->chr10:79550549-79686378:-,discs_large_homolog_5	A204_SOFT_TISSUE	0.01	0.05	0.0422	FALSE	0	0	0	1	0	FALSE	ACH-000201
A204_SOFT_TISSUE	DNER--TRIP12	1	1	DNER	6135	chr2:230450574:-	TRIP12	39108	chr2:230673085:-	ONLY_REF_SPLICE	NO	1994	126	0	0.02	0.0141	0.0141	LOCAL_REARRANGEMENT:-:[49280],DNER->chr2:230222345-230579274:-,delta/notch_like_EGF_repeat_containing,TRIP12->chr2:230628554-230787955:-,thyroid_hormone_receptor_interactor_12	A204_SOFT_TISSUE	0	0.02	0.0282	FALSE	0	0	0	1	0	FALSE	ACH-000201
A204_SOFT_TISSUE	EHMT1--GNAS	1	1	EHMT1	3610	chr9:140605482:+	GNAS	67021	chr20:57470667:+	ONLY_REF_SPLICE	YES	18	4162	0.1	0	0.0141	0.0141	EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	A204_SOFT_TISSUE	0	0.1	0.0282	FALSE	0	0	0	2	0	FALSE	ACH-000201
A204_SOFT_TISSUE	LYRM4--FARS2	1	1	LYRM4	4789	chr6:5216851:-	FARS2	27758	chr6:5404775:+	ONLY_REF_SPLICE	NO	220	46	0.01	0.04	0.0141	0.0141	GTEx_v2:{count=2;pct=0.02%;dist=Ovary=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[105],LYRM4->LYR_motif_containing_4,chr6:5102827-5261172:-,FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial	A204_SOFT_TISSUE	0.01	0.04	0.0282	FALSE	0	1	0	2	0	FALSE	ACH-000201
EKVX_LUNG	MT-ND4--MT-ND4L	155	9	MT-ND4	1170	chrM:10929:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	95	0	0.63	1	1.7954	0.1042	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EKVX_LUNG	0.63	1	1.8996	FALSE	344	826	44	306	0	FALSE	ACH-000706
EKVX_LUNG	TIMM23B--LINC00843	71	41	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8224	0.4749	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EKVX_LUNG	1	1	1.2973	TRUE	508	994	45	981	0	FALSE	ACH-000706
EKVX_LUNG	GMDS--RP11-284J1.1	51	45	GMDS	10931	chr6:1930337:-	RP11-284J1.1	23635	chr6:776969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5907	0.5212	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,RP11-284J1.1->chr6:774747-780214:-	EKVX_LUNG	1	1	1.1119	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	TIMM23--RP11-464F9.1	41	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	518	5	0.08	0.9	0.4749	0.0695	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EKVX_LUNG	0.08	0.9	0.5444	TRUE	519	3926	326	965	0	FALSE	ACH-000706
EKVX_LUNG	CUL5--RP11-680E19.2	28	47	CUL5	12496	chr11:107948967:+	RP11-680E19.2	27117	chr11:106181513:+	INCL_NON_REF_SPLICE	YES	585	8	0.11	0.9	0.3243	0.5444	CUL5->chr11:107879459-107978503:+,cullin_5,RP11-680E19.2->chr11:106180772-106182518:+	EKVX_LUNG	0.11	0.9	0.8687	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	C15orf57--CBX3	25	48	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	119	69	0.38	0.51	0.2896	0.556	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EKVX_LUNG	0.38	0.51	0.8456	TRUE	267	562	48	632	0	FALSE	ACH-000706
EKVX_LUNG	UVRAG--CCDC67	25	19	UVRAG	21434	chr11:75728024:+	CCDC67	50791	chr11:93170709:+	ONLY_REF_SPLICE	YES	46	0	0.49	1	0.2896	0.2201	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,CCDC67->chr11:93063137-93171653:+,coiled-coil_domain_containing_67	EKVX_LUNG	0.49	1	0.5097	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	MT-TA--MT-TC	24	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.278	0.0116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EKVX_LUNG	1	1	0.2896	FALSE	462	80	0	856	0	FALSE	ACH-000706
EKVX_LUNG	ATXN2--BRAP	22	2	ATXN2	1893	chr12:112036588:-	BRAP	43409	chr12:112103591:-	ONLY_REF_SPLICE	YES	3	40	0.89	0.38	0.2548	0.0232	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Left_Ventricle=1},LOCAL_REARRANGEMENT:-:[42470],ATXN2->ataxin_2,chr12:111890018-112037480:-,BRAP->BRCA1_associated_protein,chr12:112079950-112123790:-	EKVX_LUNG	0.38	0.89	0.278	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	ZNF217--RP11-499O7.7	17	20	ZNF217	12223	chr20:52188260:-	RP11-499O7.7	18973	chr10:5038229:+	ONLY_REF_SPLICE	YES	167	17	0.18	0.69	0.1969	0.2317	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,RP11-499O7.7->chr10:5037680-5039572:+	EKVX_LUNG	0.18	0.69	0.4286	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	NARS2--MMP10	17	19	NARS2	7420	chr11:78270585:-	MMP10	21347	chr11:102650092:-	ONLY_REF_SPLICE	YES	247	33	0.13	0.52	0.1969	0.2201	{Klijn_CCL:Lung=1},NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-,MMP10->chr11:102641234-102651359:-,matrix_metallopeptidase_10	EKVX_LUNG	0.13	0.52	0.417	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	DDX10--CUL5	18	13	DDX10	15097	chr11:108594189:+	CUL5	35569	chr11:107904528:+	ONLY_REF_SPLICE	YES	679	405	0.04	0.07	0.2085	0.1506	{Klijn_CCL:Lung=1},DDX10->DEAD-box_helicase_10,Oncogene{Bushman},chr11:108535752-108811657:+,CUL5->chr11:107879459-107978503:+,cullin_5	EKVX_LUNG	0.04	0.07	0.3591	TRUE	0	0	0	1	0	FALSE	ACH-000706
EKVX_LUNG	NEU3--ZDHHC24	14	25	NEU3	6879	chr11:74716670:+	ZDHHC24	14672	chr11:66311452:-	ONLY_REF_SPLICE	YES	18	87	0.68	0.31	0.1622	0.2896	NEU3->Oncogene{Bushman},chr11:74699179-74729938:+,neuraminidase_3_(membrane_sialidase),ZDHHC24->chr11:66288108-66313709:-,zinc_finger_DHHC-type_containing_24	EKVX_LUNG	0.31	0.68	0.4518	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ND4L	6	55	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	2769	0	0.02	1	0.0695	0.6371	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EKVX_LUNG	0.02	1	0.7066	FALSE	344	827	44	306	0	FALSE	ACH-000706
EKVX_LUNG	TGFBR2--GPD1L	17	8	TGFBR2	1476	chr3:30648469:+	GPD1L	17834	chr3:32169568:+	ONLY_REF_SPLICE	YES	18	44	0.58	0.36	0.1969	0.0927	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,GPD1L->chr3:32147181-32210205:+,glycerol-3-phosphate_dehydrogenase_1-like	EKVX_LUNG	0.36	0.58	0.2896	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	17	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19144	14	0	0.58	0.1969	0.0232	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	0.58	0.2201	FALSE	230	198	14	283	0	FALSE	ACH-000706
EKVX_LUNG	C15orf57--CBX3	8	37	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	115	69	0.28	0.39	0.0927	0.4286	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EKVX_LUNG	0.28	0.39	0.5213	TRUE	267	562	48	632	0	FALSE	ACH-000706
EKVX_LUNG	NRIP1--AF127936.7	14	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1622	0.0347	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	EKVX_LUNG	1	1	0.1969	FALSE	292	1546	117	613	0	FALSE	ACH-000706
EKVX_LUNG	RP5-977B1.7--NDRG3	12	11	RP5-977B1.7	7893	chr20:35153904:-	NDRG3	25745	chr20:35294795:-	ONLY_REF_SPLICE	YES	1	189	0.96	0.11	0.139	0.1274	LOCAL_REARRANGEMENT:-:[78375],RP5-977B1.7->chr20:35136563-35201794:-,NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-	EKVX_LUNG	0.11	0.96	0.2664	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	11	12	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	25072	85	0	0.21	0.1274	0.139	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	0.21	0.2664	FALSE	231	217	16	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	13	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	18855	4	0	0.79	0.1506	0.0232	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	0.79	0.1738	FALSE	230	193	14	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND5--MT-ND6	8	17	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	1	4939	0.96	0.01	0.0927	0.1969	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	EKVX_LUNG	0.01	0.96	0.2896	FALSE	26	124	4	93	0	FALSE	ACH-000706
EKVX_LUNG	NARS2--MMP10	6	25	NARS2	7420	chr11:78270585:-	MMP10	20963	chr11:102650476:-	ONLY_REF_SPLICE	YES	247	33	0.11	0.48	0.0695	0.2896	{Klijn_CCL:Lung=1},NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-,MMP10->chr11:102641234-102651359:-,matrix_metallopeptidase_10	EKVX_LUNG	0.11	0.48	0.3591	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	YAP1--CUL5	9	13	YAP1	8159	chr11:102076805:+	CUL5	21322	chr11:107904528:+	ONLY_REF_SPLICE	YES	1109	405	0.02	0.05	0.1042	0.1506	{Klijn_CCL:Lung=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,CUL5->chr11:107879459-107978503:+,cullin_5	EKVX_LUNG	0.02	0.05	0.2548	TRUE	0	0	0	1	0	FALSE	ACH-000706
EKVX_LUNG	MT-ATP6--MT-CO1	12	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.139	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EKVX_LUNG	1	1	0.139	FALSE	183	104	9	328	0	FALSE	ACH-000706
EKVX_LUNG	GMDS--RP11-284J1.1	9	10	GMDS	10931	chr6:1930337:-	RP11-284J1.1	24974	chr6:775630:-	INCL_NON_REF_SPLICE	YES	0	34	1	0.36	0.1042	0.1158	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,RP11-284J1.1->chr6:774747-780214:-	EKVX_LUNG	0.36	1	0.22	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	9	10	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	26337	1596	0	0.01	0.1042	0.1158	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	0.01	0.22	FALSE	231	217	16	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND6--MT-TE	11	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.81	1	0.1274	0.0232	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EKVX_LUNG	0.81	1	0.1506	FALSE	499	1288	110	792	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ND4L	3	30	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	19	0	0.63	1	0.0347	0.3475	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EKVX_LUNG	0.63	1	0.3822	FALSE	344	821	44	306	0	FALSE	ACH-000706
EKVX_LUNG	RP5-977B1.7--NDRG3	8	10	RP5-977B1.7	2583	chr20:35199844:-	NDRG3	25745	chr20:35294795:-	ONLY_REF_SPLICE	YES	0	189	1	0.09	0.0927	0.1158	LOCAL_REARRANGEMENT:-:[78375],RP5-977B1.7->chr20:35136563-35201794:-,NDRG3->NDRG_family_member_3,chr20:35280169-35374481:-	EKVX_LUNG	0.09	1	0.2085	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ND4L	8	9	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	163	0	0.09	1	0.0927	0.1042	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EKVX_LUNG	0.09	1	0.1969	FALSE	344	826	44	306	0	FALSE	ACH-000706
EKVX_LUNG	MT-ATP6--MT-CO1	10	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1158	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EKVX_LUNG	1	1	0.1158	FALSE	183	104	9	328	0	FALSE	ACH-000706
EKVX_LUNG	THRB--ZCWPW2	8	6	THRB	1596	chr3:24536178:-	ZCWPW2	37185	chr3:28533618:+	ONLY_REF_SPLICE	YES	5	4	0.74	0.78	0.0927	0.0695	THRB->chr3:24158651-24536773:-,thyroid_hormone_receptor_beta,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	EKVX_LUNG	0.74	0.78	0.1622	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	MT-ND6--MT-TE	9	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1042	0.0116	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EKVX_LUNG	1	1	0.1158	FALSE	499	1288	110	792	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND5--MT-ND6	3	24	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0.278	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	EKVX_LUNG	1	1	0.3127	FALSE	26	124	4	93	0	FALSE	ACH-000706
EKVX_LUNG	GMDS--RP11-284J1.1	2	27	GMDS	8873	chr6:1960101:-	RP11-284J1.1	23635	chr6:776969:-	ONLY_REF_SPLICE	YES	12	0	0.71	1	0.0232	0.3127	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,RP11-284J1.1->chr6:774747-780214:-	EKVX_LUNG	0.71	1	0.3359	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	3	22	MT-ND4	2240	chrM:11999:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	3929	0	0.01	1	0.0347	0.2548	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0.01	1	0.2895	FALSE	216	209	16	281	0	FALSE	ACH-000706
EKVX_LUNG	RP11-353N4.6--SEC22B	6	10	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	174	806	0.08	0.02	0.0695	0.1158	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	EKVX_LUNG	0.02	0.08	0.1853	TRUE	49	42	7	43	0	FALSE	ACH-000706
EKVX_LUNG	MT-ATP6--MT-CO2	6	9	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	65	4	0.19	0.79	0.0695	0.1042	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	EKVX_LUNG	0.19	0.79	0.1737	FALSE	59	21	0	114	0	FALSE	ACH-000706
EKVX_LUNG	NRIP1--AF127936.7	7	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.63	1	0.0811	0.0579	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	EKVX_LUNG	0.63	1	0.139	FALSE	125	705	46	456	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ND4L	4	16	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	16155	0	0	1	0.0463	0.1853	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EKVX_LUNG	0	1	0.2316	FALSE	328	800	43	304	0	FALSE	ACH-000706
EKVX_LUNG	ATXN2--BRAP	6	7	ATXN2	2761	chr12:112035720:-	BRAP	43409	chr12:112103591:-	ONLY_REF_SPLICE	YES	11	40	0.54	0.25	0.0695	0.0811	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Left_Ventricle=1},LOCAL_REARRANGEMENT:-:[42470],ATXN2->ataxin_2,chr12:111890018-112037480:-,BRAP->BRCA1_associated_protein,chr12:112079950-112123790:-	EKVX_LUNG	0.25	0.54	0.1506	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	DPH6-AS1--RP11-684B21.1	7	3	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	10	0	0.5	1	0.0811	0.0347	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	EKVX_LUNG	0.5	1	0.1158	TRUE	17	119	17	33	0	FALSE	ACH-000706
EKVX_LUNG	RP11-353N4.6--SEC22B	5	11	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	171	806	0.09	0.02	0.0579	0.1274	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	EKVX_LUNG	0.02	0.09	0.1853	TRUE	49	42	7	43	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	4	14	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	26984	0	0	1	0.0463	0.1622	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	1	0.2085	FALSE	231	217	16	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ATP6--MT-CO2	5	9	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	65	3	0.18	0.82	0.0579	0.1042	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	EKVX_LUNG	0.18	0.82	0.1621	FALSE	59	21	0	114	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	6	5	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	28571	0	0	1	0.0695	0.0579	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	1	0.1274	FALSE	231	217	16	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ATP6--MT-CO1	7	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0811	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EKVX_LUNG	1	1	0.0811	FALSE	183	104	9	328	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	3	15	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	26029	0	0	1	0.0347	0.1737	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	1	0.2084	FALSE	231	217	16	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ATP6--MT-CO2	6	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	46	4	0.15	0.67	0.0695	0.0232	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	EKVX_LUNG	0.15	0.67	0.0927	FALSE	59	21	0	114	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	6	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	19064	85	0	0.09	0.0695	0.0232	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	0.09	0.0927	FALSE	230	198	14	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND6--MT-TE	6	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0695	0.0232	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EKVX_LUNG	1	1	0.0927	FALSE	499	1288	110	792	0	FALSE	ACH-000706
EKVX_LUNG	GULP1--ANKAR	5	5	GULP1	2444	chr2:189157839:+	ANKAR	33432	chr2:190554253:+	ONLY_REF_SPLICE	YES	256	15	0.04	0.4	0.0579	0.0579	GULP1->GULP,_engulfment_adaptor_PTB_domain_containing_1,chr2:189156396-189460653:+,ANKAR->ankyrin_and_armadillo_repeat_containing,chr2:190539016-190625919:+	EKVX_LUNG	0.04	0.4	0.1158	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	5	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	28629	0	0	1	0.0579	0.0579	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	1	0.1158	FALSE	231	217	16	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	3	13	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	27065	0	0	1	0.0347	0.1506	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	1	0.1853	FALSE	231	217	16	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	3	13	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	27131	14	0	0.53	0.0347	0.1506	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	0.53	0.1853	FALSE	231	217	16	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	3	12	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	27002	0	0	1	0.0347	0.139	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	1	0.1737	FALSE	231	217	16	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	3	12	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	26950	0	0	1	0.0347	0.139	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	1	0.1737	FALSE	231	217	16	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND6--MT-TE	5	4	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.0579	0.0463	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EKVX_LUNG	0.69	1	0.1042	FALSE	499	1288	110	792	0	FALSE	ACH-000706
EKVX_LUNG	PLCB4--PLCB1	6	0	PLCB4	1141	chr20:9049550:+	PLCB1	86832	chr20:8862269:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0695	0	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	EKVX_LUNG	1	1	0.0695	TRUE	0	0	0	2	0	TRUE	ACH-000706
EKVX_LUNG	RP11-123O10.4--GRIP1	5	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0579	0.0347	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	EKVX_LUNG	1	1	0.0926	FALSE	416	2512	207	587	0	FALSE	ACH-000706
EKVX_LUNG	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.0463	0.0811	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EKVX_LUNG	0.85	1	0.1274	FALSE	407	2205	196	549	0	FALSE	ACH-000706
EKVX_LUNG	CALM3--MT-ND4L	5	2	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1744	0	0	1	0.0579	0.0232	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EKVX_LUNG	0	1	0.0811	FALSE	1	1	0	107	0	FALSE	ACH-000706
EKVX_LUNG	MT-TA--MT-TC	5	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0.0232	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EKVX_LUNG	1	1	0.0811	FALSE	462	80	0	856	0	FALSE	ACH-000706
EKVX_LUNG	MT-TA--MT-TC	5	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0.0232	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EKVX_LUNG	1	1	0.0811	FALSE	462	80	0	856	0	FALSE	ACH-000706
EKVX_LUNG	MB21D2--FGF12	5	1	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	35	8	0.15	0.43	0.0579	0.0116	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	EKVX_LUNG	0.15	0.43	0.0695	FALSE	0	17	0	46	0	FALSE	ACH-000706
EKVX_LUNG	MT-ATP6--MT-CO1	5	1	MT-ATP6	1380	chrM:8906:+	MT-CO1	5953	chrM:7175:+	INCL_NON_REF_SPLICE	NO	18196	16349	0	0	0.0579	0.0116	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EKVX_LUNG	0	0	0.0695	FALSE	183	104	9	328	0	FALSE	ACH-000706
EKVX_LUNG	MT-ATP6--MT-CO2	3	9	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	65	4	0.16	0.75	0.0347	0.1042	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	EKVX_LUNG	0.16	0.75	0.1389	FALSE	59	21	0	114	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	1	1	0.0579	FALSE	231	205	14	283	0	FALSE	ACH-000706
EKVX_LUNG	LINC00473--PDE10A	4	3	LINC00473	1520	chr6:166401017:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	93	1	0.07	0.88	0.0463	0.0347	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	EKVX_LUNG	0.07	0.88	0.081	FALSE	6	13	0	15	0	FALSE	ACH-000706
EKVX_LUNG	MT-ATP6--MT-CO2	3	6	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	59	4	0.13	0.69	0.0347	0.0695	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	EKVX_LUNG	0.13	0.69	0.1042	FALSE	59	21	0	114	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	18919	0	0	1	0.0463	0.0232	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	1	0.0695	FALSE	230	197	14	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	19144	85	0	0.07	0.0463	0.0232	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	0.07	0.0695	FALSE	230	198	14	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	20477	2034	0	0	0.0463	0.0232	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	0	0.0695	FALSE	231	204	14	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	28817	0	0	1	0.0347	0.0579	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	1	0.0926	FALSE	231	217	16	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	28629	0	0	1	0.0347	0.0579	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	1	0.0926	FALSE	231	217	16	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	28626	0	0	1	0.0347	0.0579	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	1	0.0926	FALSE	231	217	16	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	28701	0	0	1	0.0347	0.0579	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	1	0.0926	FALSE	231	217	16	283	0	FALSE	ACH-000706
EKVX_LUNG	RP11-108K3.1--GLDN	4	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0463	0.0116	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	EKVX_LUNG	0.83	1	0.0579	FALSE	0	30	1	55	0	FALSE	ACH-000706
EKVX_LUNG	XXbac-BPG252P9.9--TUBBP2	4	1	XXbac-BPG252P9.9	1083	chr6:30691572:-	TUBBP2	4900	chr13:41959193:-	INCL_NON_REF_SPLICE	YES	2631	0	0	1	0.0463	0.0116	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	EKVX_LUNG	0	1	0.0579	FALSE	0	1	0	48	1	FALSE	ACH-000706
EKVX_LUNG	XXbac-BPG252P9.9--TUBBP2	4	1	XXbac-BPG252P9.9	1181	chr6:30691474:-	TUBBP2	4895	chr13:41959198:-	INCL_NON_REF_SPLICE	NO	2988	0	0	1	0.0463	0.0116	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	EKVX_LUNG	0	1	0.0579	FALSE	0	1	0	48	1	FALSE	ACH-000706
EKVX_LUNG	YAP1--CUL5	1	13	YAP1	8171	chr11:102076817:+	CUL5	21322	chr11:107904528:+	ONLY_REF_SPLICE	YES	1221	405	0.01	0.03	0.0116	0.1506	{Klijn_CCL:Lung=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,CUL5->chr11:107879459-107978503:+,cullin_5	EKVX_LUNG	0.01	0.03	0.1622	TRUE	0	0	0	1	0	FALSE	ACH-000706
EKVX_LUNG	YAP1--CUL5	1	13	YAP1	9219	chr11:102080295:+	CUL5	21322	chr11:107904528:+	ONLY_REF_SPLICE	YES	1201	405	0.01	0.03	0.0116	0.1506	{Klijn_CCL:Lung=1},YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+,CUL5->chr11:107879459-107978503:+,cullin_5	EKVX_LUNG	0.01	0.03	0.1622	TRUE	0	0	0	1	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND6--MT-TE	3	4	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0347	0.0463	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EKVX_LUNG	0.88	1	0.081	FALSE	499	1288	110	792	0	FALSE	ACH-000706
EKVX_LUNG	NUDT1--HACE1	4	0	NUDT1	5854	chr7:2289637:+	HACE1	17983	chr6:105272782:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0463	0	GTEx&tcga_normals:1/3694=0.03%,NUDT1->chr7:2281857-2290781:+,nudix_hydrolase_1,HACE1->HECT_domain_and_ankyrin_repeat_containing_E3_ubiquitin_protein_ligase_1,chr6:105175968-105307794:-	EKVX_LUNG	1	1	0.0463	TRUE	1	20	0	20	17	FALSE	ACH-000706
EKVX_LUNG	RP11-162A12.2--ALKBH8	4	0	RP11-162A12.2	1280	chr18:74533972:-	ALKBH8	10919	chr11:107431625:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0463	0	RP11-162A12.2->chr18:74506688-74534251:-,ALKBH8->alkB_homolog_8,_tRNA_methyltransferase,chr11:107373452-107436472:-	EKVX_LUNG	1	1	0.0463	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ND4L	3	3	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	122	0	0.05	1	0.0347	0.0347	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EKVX_LUNG	0.05	1	0.0694	FALSE	344	826	44	306	0	FALSE	ACH-000706
EKVX_LUNG	NCOA3--RP11-1M18.1	3	3	NCOA3	1163	chr20:46130763:+	RP11-1M18.1	29532	chrX:6639585:-	ONLY_REF_SPLICE	YES	17	0	0.26	1	0.0347	0.0347	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,RP11-1M18.1->chrX:6585906-6639585:-	EKVX_LUNG	0.26	1	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	UVRAG--CCDC67	1	11	UVRAG	19092	chr11:75719911:+	CCDC67	50791	chr11:93170709:+	ONLY_REF_SPLICE	NO	70	0	0.15	1	0.0116	0.1274	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,CCDC67->chr11:93063137-93171653:+,coiled-coil_domain_containing_67	EKVX_LUNG	0.15	1	0.139	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	NO	10571	546	0	0.01	0.0347	0.0232	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	0.01	0.0579	FALSE	230	193	14	283	0	FALSE	ACH-000706
EKVX_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	19667	0	0	1	0.0347	0.0232	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	0	1	0.0579	FALSE	231	204	14	283	0	FALSE	ACH-000706
EKVX_LUNG	NCOA3--RP11-1M18.1	3	2	NCOA3	1163	chr20:46130763:+	RP11-1M18.1	30660	chrX:6624507:-	ONLY_REF_SPLICE	YES	17	0	0.23	1	0.0347	0.0232	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,RP11-1M18.1->chrX:6585906-6639585:-	EKVX_LUNG	0.23	1	0.0579	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	RP11-120D5.1--MID1	3	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	84	0.71	0.06	0.0347	0.0232	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	EKVX_LUNG	0.06	0.71	0.0579	FALSE	16	356	14	466	0	FALSE	ACH-000706
EKVX_LUNG	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.42	0.0347	0.0232	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	EKVX_LUNG	0.42	1	0.0579	TRUE	458	1351	185	561	0	FALSE	ACH-000706
EKVX_LUNG	THRB--ZCWPW2	2	6	THRB	1631	chr3:24536143:-	ZCWPW2	39357	chr3:28555555:+	ONLY_REF_SPLICE	YES	7	5	0.53	0.62	0.0232	0.0695	THRB->chr3:24158651-24536773:-,thyroid_hormone_receptor_beta,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	EKVX_LUNG	0.53	0.62	0.0927	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	WTAPP1--RP11-843A23.1	3	2	WTAPP1	2324	chr11:102622157:+	RP11-843A23.1	18949	chr11:78269310:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0.0232	WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RP11-843A23.1->chr11:78244222-78269611:+	EKVX_LUNG	1	1	0.0579	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	ZNF217--RP11-499O7.7	1	10	ZNF217	11090	chr20:52192266:-	RP11-499O7.7	18973	chr10:5038229:+	ONLY_REF_SPLICE	YES	176	17	0.06	0.39	0.0116	0.1158	ZNF217->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr20:52183604-52226446:-,zinc_finger_protein_217,RP11-499O7.7->chr10:5037680-5039572:+	EKVX_LUNG	0.06	0.39	0.1274	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	RP11-120D5.1--MID1	3	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	84	0.5	0.05	0.0347	0.0116	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	EKVX_LUNG	0.05	0.5	0.0463	FALSE	0	48	1	163	0	FALSE	ACH-000706
EKVX_LUNG	TGFBR2--GPD1L	3	1	TGFBR2	1092	chr3:30648085:+	GPD1L	17834	chr3:32169568:+	INCL_NON_REF_SPLICE	YES	1	44	0.8	0.08	0.0347	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,GPD1L->chr3:32147181-32210205:+,glycerol-3-phosphate_dehydrogenase_1-like	EKVX_LUNG	0.08	0.8	0.0463	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	XXbac-BPG252P9.9--TUBBP2	3	1	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	1232	0	0	1	0.0347	0.0116	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	EKVX_LUNG	0	1	0.0463	FALSE	0	1	0	48	1	FALSE	ACH-000706
EKVX_LUNG	CLPB--BANF1	2	4	CLPB	6253	chr11:72114010:-	BANF1	26434	chr11:65770706:+	ONLY_REF_SPLICE	NO	42	458	0.12	0.01	0.0232	0.0463	CLPB->ClpB_homolog,_mitochondrial_AAA_ATPase_chaperonin,chr11:72003469-72145692:-,BANF1->barrier_to_autointegration_factor_1,chr11:65769550-65771620:+	EKVX_LUNG	0.01	0.12	0.0695	FALSE	0	0	0	1	0	FALSE	ACH-000706
EKVX_LUNG	NRIP1--AF127936.7	1	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	14	0	0.39	1	0.0116	0.0927	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	EKVX_LUNG	0.39	1	0.1043	FALSE	164	806	69	479	0	FALSE	ACH-000706
EKVX_LUNG	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.75	0.86	0.0232	0.0463	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EKVX_LUNG	0.75	0.86	0.0695	FALSE	515	4851	409	746	0	FALSE	ACH-000706
EKVX_LUNG	SNRNP70--MT-ATP8	3	0	SNRNP70	2048	chr19:49589723:+	MT-ATP8	15299	chrM:8423:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	SNRNP70->chr19:49588676-49611862:+,small_nuclear_ribonucleoprotein_U1_subunit_70,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	1	1	0.0347	FALSE	0	0	0	1	0	FALSE	ACH-000706
EKVX_LUNG	SNRNP70--MT-ATP8	3	0	SNRNP70	2059	chr19:49589734:+	MT-ATP8	15344	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	SNRNP70->chr19:49588676-49611862:+,small_nuclear_ribonucleoprotein_U1_subunit_70,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EKVX_LUNG	1	1	0.0347	FALSE	0	0	0	1	0	FALSE	ACH-000706
EKVX_LUNG	THRB--ZCWPW2	3	0	THRB	1488	chr3:24536286:-	ZCWPW2	39357	chr3:28555555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	THRB->chr3:24158651-24536773:-,thyroid_hormone_receptor_beta,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	EKVX_LUNG	1	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	CLPB--BANF1	2	3	CLPB	6253	chr11:72114010:-	BANF1	26825	chr11:65771097:+	ONLY_REF_SPLICE	YES	42	2719	0.11	0	0.0232	0.0347	CLPB->ClpB_homolog,_mitochondrial_AAA_ATPase_chaperonin,chr11:72003469-72145692:-,BANF1->barrier_to_autointegration_factor_1,chr11:65769550-65771620:+	EKVX_LUNG	0	0.11	0.0579	FALSE	0	0	0	1	0	FALSE	ACH-000706
EKVX_LUNG	GULP1--ANKAR	2	3	GULP1	1498	chr2:189156893:+	ANKAR	33432	chr2:190554253:+	ONLY_REF_SPLICE	YES	133	15	0.04	0.25	0.0232	0.0347	GULP1->GULP,_engulfment_adaptor_PTB_domain_containing_1,chr2:189156396-189460653:+,ANKAR->ankyrin_and_armadillo_repeat_containing,chr2:190539016-190625919:+	EKVX_LUNG	0.04	0.25	0.0579	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	BASP1--RP11-321E2.3	2	2	BASP1	4506	chr5:17217919:+	RP11-321E2.3	12944	chr5:17441578:+	ONLY_REF_SPLICE	NO	879	0	0	1	0.0232	0.0232	BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+,RP11-321E2.3->chr5:17404128-17441803:+	EKVX_LUNG	0	1	0.0464	FALSE	0	4	0	4	3	FALSE	ACH-000706
EKVX_LUNG	THRB--ZCWPW2	1	6	THRB	1631	chr3:24536143:-	ZCWPW2	37185	chr3:28533618:+	ONLY_REF_SPLICE	YES	7	4	0.5	0.64	0.0116	0.0695	THRB->chr3:24158651-24536773:-,thyroid_hormone_receptor_beta,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	EKVX_LUNG	0.5	0.64	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	THRB--ZCWPW2	1	6	THRB	1596	chr3:24536178:-	ZCWPW2	39357	chr3:28555555:+	ONLY_REF_SPLICE	YES	5	5	0.58	0.58	0.0116	0.0695	THRB->chr3:24158651-24536773:-,thyroid_hormone_receptor_beta,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	EKVX_LUNG	0.58	0.58	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	CCDC122--ENOX1	2	1	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	48	32	0.06	0.09	0.0232	0.0116	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	EKVX_LUNG	0.06	0.09	0.0348	FALSE	39	52	2	34	0	FALSE	ACH-000706
EKVX_LUNG	TLN1--ACTG1	2	1	TLN1	24590	chr9:35699971:-	ACTG1	34165	chr17:79478652:-	ONLY_REF_SPLICE	YES	368	15038	0.01	0	0.0232	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Gastroesophageal_Junction=2},TLN1->chr9:35696945-35732392:-,talin_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	EKVX_LUNG	0	0.01	0.0348	FALSE	0	0	0	1	0	FALSE	ACH-000706
EKVX_LUNG	ANTXR1--ACTR2	2	0	ANTXR1	14156	chr2:69351775:+	ACTR2	42591	chr2:65495698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	ANTXR1->anthrax_toxin_receptor_1,chr2:69240310-69476459:+,ACTR2->ARP2_actin-related_protein_2_homolog_(yeast),chr2:65454887-65498387:+	EKVX_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	BCL6--MRPL47	2	0	BCL6	5252	chr3:187452657:-	MRPL47	21062	chr3:179319578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	BCL6->B-cell_CLL/lymphoma_6,Oncogene{Bushman},chr3:187439165-187463515:-,MRPL47->chr3:179306073-179322442:-,mitochondrial_ribosomal_protein_L47	EKVX_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	EXT2--HSD17B12	2	0	EXT2	12956	chr11:44151688:+	HSD17B12	54733	chr11:43876265:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	EXT2->Oncogene{Bushman},chr11:44117099-44266979:+,exostosin_glycosyltransferase_2,HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12	EKVX_LUNG	1	1	0.0232	TRUE	0	0	0	2	0	TRUE	ACH-000706
EKVX_LUNG	LINC00473--PDE10A	2	0	LINC00473	1520	chr6:166401017:-	PDE10A	20849	chr6:165895831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	EKVX_LUNG	1	1	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000706
EKVX_LUNG	LINC01004--SRPK2	2	0	LINC01004	1113	chr7:104653379:-	SRPK2	21959	chr7:104787105:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	LOCAL_REARRANGEMENT:-:[97660],LINC01004->chr7:104590762-104653491:-,long_intergenic_non-protein_coding_RNA_1004,SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-	EKVX_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	PIGN--CCDC9	2	0	PIGN	1275	chr18:59854077:-	CCDC9	49356	chr19:47769868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	PIGN->chr18:59710800-59854351:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_N,CCDC9->chr19:47759237-47775210:+,coiled-coil_domain_containing_9	EKVX_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	EKVX_LUNG	1	1	0.0232	TRUE	465	1949	224	605	0	FALSE	ACH-000706
EKVX_LUNG	RP4-594A5.1--NXPH1	2	0	RP4-594A5.1	1415	chr7:8343785:+	NXPH1	8026	chr7:8475234:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	NEIGHBORS[92612],RP4-594A5.1->chr7:8343371-8380973:+,NXPH1->chr7:8473585-8792593:+,neurexophilin_1	EKVX_LUNG	1	1	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000706
EKVX_LUNG	RP4-594A5.1--NXPH1	2	0	RP4-594A5.1	1415	chr7:8343785:+	NXPH1	11347	chr7:8790638:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	NEIGHBORS[92612],RP4-594A5.1->chr7:8343371-8380973:+,NXPH1->chr7:8473585-8792593:+,neurexophilin_1	EKVX_LUNG	1	1	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000706
EKVX_LUNG	SLC7A6--PIGG	2	0	SLC7A6	3192	chr16:68300624:+	PIGG	32734	chr4:517248:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	SLC7A6->chr16:68298433-68335722:+,solute_carrier_family_7_member_6,PIGG->chr4:492989-533985:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_G	EKVX_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	SRSF11--UFC1	2	0	SRSF11	1099	chr1:70671463:+	UFC1	24579	chr1:161123716:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11,UFC1->chr1:161122566-161128646:+,ubiquitin-fold_modifier_conjugating_enzyme_1	EKVX_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	THRB--ZCWPW2	1	4	THRB	1596	chr3:24536178:-	ZCWPW2	41484	chr3:28562483:+	ONLY_REF_SPLICE	YES	5	12	0.5	0.29	0.0116	0.0463	THRB->chr3:24158651-24536773:-,thyroid_hormone_receptor_beta,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	EKVX_LUNG	0.29	0.5	0.0579	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	THRB--ZCWPW2	2	0	THRB	1150	chr3:24536624:-	ZCWPW2	37185	chr3:28533618:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0232	0	THRB->chr3:24158651-24536773:-,thyroid_hormone_receptor_beta,ZCWPW2->chr3:28390637-28579613:+,zinc_finger_CW-type_and_PWWP_domain_containing_2	EKVX_LUNG	1	1	0.0232	TRUE	0	0	0	1	0	TRUE	ACH-000706
EKVX_LUNG	CLPB--BANF1	1	3	CLPB	2760	chr11:72141356:-	BANF1	26825	chr11:65771097:+	ONLY_REF_SPLICE	YES	77	2719	0.05	0	0.0116	0.0347	CLPB->ClpB_homolog,_mitochondrial_AAA_ATPase_chaperonin,chr11:72003469-72145692:-,BANF1->barrier_to_autointegration_factor_1,chr11:65769550-65771620:+	EKVX_LUNG	0	0.05	0.0463	FALSE	0	0	0	1	0	FALSE	ACH-000706
EKVX_LUNG	LINC00473--PDE10A	1	3	LINC00473	9097	chr6:166324296:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	10	1	0.29	0.8	0.0116	0.0347	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	EKVX_LUNG	0.29	0.8	0.0463	FALSE	2	5	0	11	0	FALSE	ACH-000706
EKVX_LUNG	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0.0347	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	EKVX_LUNG	1	1	0.0463	FALSE	93	270	15	244	0	FALSE	ACH-000706
EKVX_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	2	32	0.6	0.09	0.0116	0.0232	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	EKVX_LUNG	0.09	0.6	0.0348	FALSE	0	23	1	67	0	FALSE	ACH-000706
EKVX_LUNG	TIMM23--RP11-464F9.1	1	2	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	644	5	0	0.38	0.0116	0.0232	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EKVX_LUNG	0	0.38	0.0348	FALSE	5	8	0	33	0	FALSE	ACH-000706
EKVX_LUNG	TMEM123--BIRC2	1	2	TMEM123	5695	chr11:102319543:-	BIRC2	22451	chr11:102248227:+	ONLY_REF_SPLICE	NO	1844	1602	0	0	0.0116	0.0232	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},{Klijn_CCL:Brain=1},LOCAL_INVERSION:-:+:[17662],TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	EKVX_LUNG	0	0	0.0348	FALSE	1	3	0	8	0	FALSE	ACH-000706
EKVX_LUNG	TMEM123--BIRC2	1	2	TMEM123	5695	chr11:102319543:-	BIRC2	19387	chr11:102233627:+	ONLY_REF_SPLICE	YES	1844	1122	0	0	0.0116	0.0232	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},{Klijn_CCL:Brain=1},LOCAL_INVERSION:-:+:[17662],TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,BIRC2->Oncogene{Bushman},baculoviral_IAP_repeat_containing_2,chr11:102217942-102249401:+	EKVX_LUNG	0	0	0.0348	FALSE	0	1	0	2	0	FALSE	ACH-000706
EKVX_LUNG	ARL15--NDUFS4	1	1	ARL15	5950	chr5:53409032:-	NDUFS4	15711	chr5:52899282:+	ONLY_REF_SPLICE	YES	53	326	0.04	0.01	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Heart=[count:2=pct:0.8],Blood_Vessel=[count:1=pct:0.3],Adrenal_Gland=[count:1=pct:1.2],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5]},GTEx_v2:{count=18;pct=0.21%;dist=Skin_-_Sun_Exposed_(Lower_leg)=3,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Prostate=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Heart_-_Atrial_Appendage=1,Testis=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,NDUFS4->NADH:ubiquinone_oxidoreductase_subunit_S4,chr5:52856463-52979168:+	EKVX_LUNG	0.01	0.04	0.0232	FALSE	0	2	1	1	0	FALSE	ACH-000706
EKVX_LUNG	CPSF6--C9orf3	1	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	190	252	0.01	0.01	0.0116	0.0116	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	EKVX_LUNG	0.01	0.01	0.0232	FALSE	53	99	2	44	0	FALSE	ACH-000706
EKVX_LUNG	GPR126--VTA1	1	1	GPR126	2987	chr6:142630781:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	YES	143	240	0.01	0.01	0.0116	0.0116	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	EKVX_LUNG	0.01	0.01	0.0232	FALSE	0	2	0	15	1	FALSE	ACH-000706
EKVX_LUNG	NOMO1--PPP1R7	1	1	NOMO1	8284	chr16:14946439:+	PPP1R7	44675	chr2:242105752:+	ONLY_REF_SPLICE	YES	936	357	0	0.01	0.0116	0.0116	NOMO1->NODAL_modulator_1,chr16:14927538-14990017:+,PPP1R7->chr2:242088991-242123067:+,protein_phosphatase_1_regulatory_subunit_7	EKVX_LUNG	0	0.01	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000706
EKVX_LUNG	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	7	12	0.22	0.14	0.0116	0.0116	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	EKVX_LUNG	0.14	0.22	0.0232	FALSE	7	44	2	41	0	FALSE	ACH-000706
EKVX_LUNG	PKM--HEXA	1	1	PKM	1708	chr15:72523457:-	HEXA	31284	chr15:72648958:-	ONLY_REF_SPLICE	NO	152	761	0.01	0	0.0116	0.0116	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,HEXA->chr15:72635775-72668817:-,hexosaminidase_subunit_alpha	EKVX_LUNG	0	0.01	0.0232	FALSE	0	0	0	2	0	FALSE	ACH-000706
EKVX_LUNG	PRR16--CTD-2334D19.1	1	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0116	0.0116	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	EKVX_LUNG	0.5	1	0.0232	FALSE	56	216	12	147	0	FALSE	ACH-000706
EKVX_LUNG	RNF11--FAF1	1	1	RNF11	1609	chr1:51702551:+	FAF1	10715	chr1:51323669:-	ONLY_REF_SPLICE	YES	407	41	0	0.05	0.0116	0.0116	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=9;pct=0.10%;dist=Artery_-_Tibial=2,Whole_Blood=2,Ovary=1,Lung=1,Brain_-_Frontal_Cortex_(BA9)=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Urinary_Bladder=1},RNF11->chr1:51701943-51739127:+,ring_finger_protein_11,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	EKVX_LUNG	0	0.05	0.0232	FALSE	2	2	0	2	0	FALSE	ACH-000706
EKVX_LUNG	UQCRC2--SEC31A	1	1	UQCRC2	14109	chr16:21987564:+	SEC31A	25926	chr4:83803093:-	ONLY_REF_SPLICE	NO	1123	90	0	0.02	0.0116	0.0116	UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II,SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-	EKVX_LUNG	0	0.02	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000706
SNU719_STOMACH	AP003900.6--AC011718.2	206	26	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	3	0	0.99	1	2.7023	0.3411	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU719_STOMACH	0.99	1	3.0434	TRUE	0	3	0	38	3	FALSE	ACH-000898
SNU719_STOMACH	TIMM23B--LINC00843	60	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7871	0.2886	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU719_STOMACH	0.99	1	1.0757	TRUE	508	994	45	981	0	FALSE	ACH-000898
SNU719_STOMACH	MT-TA--MT-TC	55	12	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7215	0.1574	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU719_STOMACH	1	1	0.8789	FALSE	462	80	0	856	0	FALSE	ACH-000898
SNU719_STOMACH	WNK1--ERC1	42	15	WNK1	37578	chr12:1017200:+	ERC1	78963	chr12:1599259:+	ONLY_REF_SPLICE	YES	100	8	0.36	0.88	0.551	0.1968	{Klijn_CCL:Stomach=1,Kidney=1,Head-Neck=1},NEIGHBORS[79057],WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,ERC1->ELKS/RAB6-interacting/CAST_family_member_1,Oncogene{Bushman},chr12:1099675-1605099:+	SNU719_STOMACH	0.36	0.88	0.7478	FALSE	0	0	0	1	0	FALSE	ACH-000898
SNU719_STOMACH	TIMM23--RP11-464F9.1	39	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5116	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU719_STOMACH	1	1	0.5116	TRUE	519	3926	326	965	0	FALSE	ACH-000898
SNU719_STOMACH	AP003900.6--AC011718.2	26	36	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	2	0	0.97	1	0.3411	0.4722	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU719_STOMACH	0.97	1	0.8133	TRUE	0	5	0	45	5	FALSE	ACH-000898
SNU719_STOMACH	MT-ND6--MT-TE	33	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4329	0.0525	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU719_STOMACH	1	1	0.4854	FALSE	499	1288	110	792	0	FALSE	ACH-000898
SNU719_STOMACH	TMEM181--WTAP	32	7	TMEM181	12663	chr6:159046238:+	WTAP	28071	chr6:160160022:+	ONLY_REF_SPLICE	YES	24	49	0.62	0.44	0.4198	0.0918	TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181,WTAP->Wilms_tumor_1_associated_protein,chr6:160146617-160177351:+	SNU719_STOMACH	0.44	0.62	0.5116	TRUE	0	0	0	1	0	TRUE	ACH-000898
SNU719_STOMACH	NRIP1--AF127936.7	31	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.4067	0.0394	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU719_STOMACH	0.94	1	0.4461	FALSE	292	1546	117	613	0	FALSE	ACH-000898
SNU719_STOMACH	NPM1P24--SET	30	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3935	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU719_STOMACH	1	1	0.3935	TRUE	0	0	0	434	0	FALSE	ACH-000898
SNU719_STOMACH	MT-ND6--MT-TE	18	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.2361	0.223	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU719_STOMACH	0.95	1	0.4591	FALSE	499	1288	110	792	0	FALSE	ACH-000898
SNU719_STOMACH	RCC1--SERINC2	20	0	RCC1	2175	chr1:28834672:+	SERINC2	30138	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2624	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	SNU719_STOMACH	1	1	0.2624	TRUE	0	24	0	2	11	TRUE	ACH-000898
SNU719_STOMACH	MT-ND6--MT-TE	18	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2361	0.0656	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU719_STOMACH	1	1	0.3017	FALSE	499	1288	110	792	0	FALSE	ACH-000898
SNU719_STOMACH	MT-TA--MT-TC	15	11	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1968	0.1443	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU719_STOMACH	1	1	0.3411	FALSE	462	80	0	856	0	FALSE	ACH-000898
SNU719_STOMACH	AP003900.6--AC011718.2	11	14	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	3	0	0.89	1	0.1443	0.1837	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU719_STOMACH	0.89	1	0.328	TRUE	0	1	0	26	1	FALSE	ACH-000898
SNU719_STOMACH	AP003900.6--AC011718.2	7	28	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	3	0	0.92	1	0.0918	0.3673	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU719_STOMACH	0.92	1	0.4591	TRUE	0	0	0	21	0	FALSE	ACH-000898
SNU719_STOMACH	NRIP1--AF127936.7	10	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.62	1	0.1312	0.0787	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU719_STOMACH	0.62	1	0.2099	FALSE	125	705	46	456	0	FALSE	ACH-000898
SNU719_STOMACH	C15orf57--CBX3	10	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	54	67	0.19	0.16	0.1312	0.0394	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU719_STOMACH	0.16	0.19	0.1706	TRUE	267	562	48	632	0	FALSE	ACH-000898
SNU719_STOMACH	AP003900.6--AC011718.2	3	29	AP003900.6	1122	chr21:11169841:+	AC011718.2	10130	chr22:20656894:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0394	0.3804	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU719_STOMACH	0.91	1	0.4198	TRUE	0	0	0	11	0	TRUE	ACH-000898
SNU719_STOMACH	AP003900.6--AC011718.2	8	9	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	3	19	0.85	0.47	0.1049	0.1181	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU719_STOMACH	0.47	0.85	0.223	TRUE	0	1	0	21	1	FALSE	ACH-000898
SNU719_STOMACH	CMTM8--CMTM7	8	4	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	72	0	0.14	1	0.1049	0.0525	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	SNU719_STOMACH	0.14	1	0.1574	FALSE	118	557	29	88	0	FALSE	ACH-000898
SNU719_STOMACH	C15orf57--CBX3	7	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	55	65	0.2	0.18	0.0918	0.0918	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU719_STOMACH	0.18	0.2	0.1836	TRUE	267	562	48	632	0	FALSE	ACH-000898
SNU719_STOMACH	MT-ND6--MT-TE	3	22	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0394	0.2886	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU719_STOMACH	0.93	1	0.328	FALSE	499	1288	110	792	0	FALSE	ACH-000898
SNU719_STOMACH	NRIP1--AF127936.7	6	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.44	1	0.0787	0.1049	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU719_STOMACH	0.44	1	0.1836	FALSE	164	806	69	479	0	FALSE	ACH-000898
SNU719_STOMACH	MT-TA--MT-TC	4	14	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0525	0.1837	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU719_STOMACH	1	1	0.2362	FALSE	462	80	0	856	0	FALSE	ACH-000898
SNU719_STOMACH	MT-ND6--MT-TE	3	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.223	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU719_STOMACH	1	1	0.2624	FALSE	499	1288	110	792	0	FALSE	ACH-000898
SNU719_STOMACH	MT-ND4--MT-ATP8	6	4	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11341	1	0	0.91	0.0787	0.0525	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU719_STOMACH	0	0.91	0.1312	FALSE	231	217	16	283	0	FALSE	ACH-000898
SNU719_STOMACH	AP003900.6--AC011718.2	4	10	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	2	19	0.88	0.42	0.0525	0.1312	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU719_STOMACH	0.42	0.88	0.1837	TRUE	0	1	0	24	1	FALSE	ACH-000898
SNU719_STOMACH	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0787	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU719_STOMACH	1	1	0.0787	FALSE	499	1288	110	792	0	FALSE	ACH-000898
SNU719_STOMACH	MT-ND4--MT-ATP8	5	3	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	10870	145	0	0.05	0.0656	0.0394	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU719_STOMACH	0	0.05	0.105	FALSE	231	217	16	283	0	FALSE	ACH-000898
SNU719_STOMACH	AP003900.6--AC011718.2	1	18	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	2	0	0.9	1	0.0131	0.2361	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU719_STOMACH	0.9	1	0.2492	TRUE	0	1	0	20	1	FALSE	ACH-000898
SNU719_STOMACH	MT-TA--MT-TC	3	9	MT-TA	1063	chrM:5593:-	MT-TC	4102	chrM:5794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.1181	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU719_STOMACH	1	1	0.1575	FALSE	462	80	0	856	0	FALSE	ACH-000898
SNU719_STOMACH	MT-ND6--MT-TE	3	8	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	3	0	0.79	1	0.0394	0.1049	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU719_STOMACH	0.79	1	0.1443	FALSE	499	1288	110	792	0	FALSE	ACH-000898
SNU719_STOMACH	MT-ND6--MT-TE	3	8	MT-ND6	1170	chrM:14504:-	MT-TE	4589	chrM:14679:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0394	0.1049	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU719_STOMACH	0.85	1	0.1443	FALSE	499	1288	110	792	0	FALSE	ACH-000898
SNU719_STOMACH	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0656	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU719_STOMACH	1	1	0.0656	FALSE	462	80	0	856	0	FALSE	ACH-000898
SNU719_STOMACH	AP003900.6--AC011718.2	1	15	AP003900.6	2187	chr21:11172043:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	3	0	0.84	1	0.0131	0.1968	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU719_STOMACH	0.84	1	0.2099	TRUE	0	0	0	5	0	TRUE	ACH-000898
SNU719_STOMACH	AP003900.6--AC011718.2	2	9	AP003900.6	2187	chr21:11172043:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	3	19	0.79	0.37	0.0262	0.1181	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	SNU719_STOMACH	0.37	0.79	0.1443	TRUE	0	0	0	4	0	TRUE	ACH-000898
SNU719_STOMACH	MT-CO1--MT-RNR2	4	1	MT-CO1	1536	chrM:6439:+	MT-RNR2	6107	chrM:2235:+	INCL_NON_REF_SPLICE	NO	21881	6720	0	0	0.0525	0.0131	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU719_STOMACH	0	0	0.0656	FALSE	44	51	6	21	0	FALSE	ACH-000898
SNU719_STOMACH	MT-CO1--MT-RNR2	4	1	MT-CO1	1653	chrM:6556:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	24021	0	0	1	0.0525	0.0131	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU719_STOMACH	0	1	0.0656	FALSE	44	51	6	21	0	FALSE	ACH-000898
SNU719_STOMACH	MT-CO1--MT-RNR2	4	1	MT-CO1	1603	chrM:6506:+	MT-RNR2	5550	chrM:1678:+	INCL_NON_REF_SPLICE	YES	20845	0	0	1	0.0525	0.0131	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU719_STOMACH	0	1	0.0656	FALSE	44	51	6	21	0	FALSE	ACH-000898
SNU719_STOMACH	C17orf76-AS1--SERINC2	4	0	C17orf76-AS1	1593	chr17:16342728:+	SERINC2	24463	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0525	0	C17orf76-AS1->chr17:16342136-16381992:+,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	SNU719_STOMACH	1	1	0.0525	TRUE	0	4	0	2	2	TRUE	ACH-000898
SNU719_STOMACH	MT-ND4--MT-ATP8	4	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0525	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU719_STOMACH	1	1	0.0525	FALSE	230	198	14	283	0	FALSE	ACH-000898
SNU719_STOMACH	MT-ND4--MT-ATP8	4	0	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0525	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU719_STOMACH	1	1	0.0525	FALSE	231	217	16	283	0	FALSE	ACH-000898
SNU719_STOMACH	RP11-662B19.2--WDR37	4	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0525	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	SNU719_STOMACH	1	1	0.0525	TRUE	31	42	1	25	0	FALSE	ACH-000898
SNU719_STOMACH	SIRT2--ZFP30	4	0	SIRT2	1357	chr19:39390146:-	ZFP30	27819	chr19:38127206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0525	0	SIRT2->chr19:39369197-39390502:-,sirtuin_2,ZFP30->ZFP30_zinc_finger_protein,chr19:38104650-38183238:-	SNU719_STOMACH	1	1	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000898
SNU719_STOMACH	AC073283.4--EPCAM	3	0	AC073283.4	1174	chr2:47572040:-	EPCAM	20907	chr2:47606092:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_INVERSION:-:+:[84],AC073283.4->chr2:47419544-47572213:-,EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule	SNU719_STOMACH	1	1	0.0394	TRUE	0	5	0	5	2	TRUE	ACH-000898
SNU719_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU719_STOMACH	1	1	0.0394	FALSE	231	205	14	283	0	FALSE	ACH-000898
SNU719_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU719_STOMACH	1	1	0.0394	FALSE	230	198	14	283	0	FALSE	ACH-000898
SNU719_STOMACH	RP11-6N13.1--CTD-2374C24.1	3	0	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SNU719_STOMACH	1	1	0.0394	TRUE	5	4	0	46	0	FALSE	ACH-000898
SNU719_STOMACH	AC073283.4--EPCAM	2	0	AC073283.4	1174	chr2:47572040:-	EPCAM	22924	chr2:47612305:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	LOCAL_INVERSION:-:+:[84],AC073283.4->chr2:47419544-47572213:-,EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule	SNU719_STOMACH	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000898
SNU719_STOMACH	GAS5--PCCA	2	0	GAS5	3122	chr1:173835899:-	PCCA	34973	chr13:101077887:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	GAS5->Oncogene{Bushman},chr1:173833038-173838020:-,growth_arrest_specific_5_(non-protein_coding),PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	SNU719_STOMACH	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000898
SNU719_STOMACH	MB21D2--FGF12	2	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	SNU719_STOMACH	1	1	0.0262	FALSE	0	17	0	46	0	FALSE	ACH-000898
SNU719_STOMACH	RP11-6N13.1--CTD-2374C24.1	2	0	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	SNU719_STOMACH	1	1	0.0262	TRUE	5	12	0	42	0	FALSE	ACH-000898
SNU719_STOMACH	ADAP1--SUN1	1	3	ADAP1	9672	chr7:959605:-	SUN1	30181	chr7:888055:+	ONLY_REF_SPLICE	YES	625	171	0.01	0.02	0.0131	0.0394	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SNU719_STOMACH	0.01	0.02	0.0525	FALSE	0	0	0	2	0	FALSE	ACH-000898
SNU719_STOMACH	ADAP1--SUN1	1	3	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	YES	625	220	0.01	0.02	0.0131	0.0394	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SNU719_STOMACH	0.01	0.02	0.0525	FALSE	16	22	0	27	0	FALSE	ACH-000898
SNU719_STOMACH	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0131	0.0394	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU719_STOMACH	1	1	0.0525	FALSE	467	2173	244	435	0	FALSE	ACH-000898
SNU719_STOMACH	RP13-188A5.1--KLF8	1	3	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0131	0.0394	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	SNU719_STOMACH	0.67	1	0.0525	TRUE	10	78	6	20	0	FALSE	ACH-000898
SNU719_STOMACH	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0.0262	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU719_STOMACH	1	1	0.0393	FALSE	515	4851	409	746	0	FALSE	ACH-000898
SNU719_STOMACH	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	48590	chr7:925693:+	ONLY_REF_SPLICE	YES	625	0	0	1	0.0131	0.0131	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	SNU719_STOMACH	0	1	0.0262	FALSE	0	4	0	9	2	FALSE	ACH-000898
SNU719_STOMACH	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	10744	chr3:32490946:+	ONLY_REF_SPLICE	YES	72	3	0.03	0.4	0.0131	0.0131	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	SNU719_STOMACH	0.03	0.4	0.0262	FALSE	1	9	0	2	0	FALSE	ACH-000898
SNU719_STOMACH	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	18197	chr21:16225752:-	ONLY_REF_SPLICE	NO	18	15	0.1	0.12	0.0131	0.0131	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU719_STOMACH	0.1	0.12	0.0262	FALSE	0	1	0	3	0	FALSE	ACH-000898
SNU719_STOMACH	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	7	1	0.22	0.0131	0.0131	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SNU719_STOMACH	0.22	1	0.0262	FALSE	141	264	50	91	0	FALSE	ACH-000898
SNU719_STOMACH	SEC31A--LIN54	1	1	SEC31A	4707	chr4:83812241:-	LIN54	54858	chr4:83852298:-	ONLY_REF_SPLICE	YES	12	18	0.14	0.1	0.0131	0.0131	LOCAL_REARRANGEMENT:-:[8807],SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-,LIN54->chr4:83831126-83934079:-,lin-54_DREAM_MuvB_core_complex_component	SNU719_STOMACH	0.1	0.14	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000898
SNU719_STOMACH	SNHG16--EHBP1	1	1	SNHG16	1092	chr17:74553939:+	EHBP1	15104	chr2:62974530:+	ONLY_REF_SPLICE	YES	5	249	0.29	0.01	0.0131	0.0131	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+	SNU719_STOMACH	0.01	0.29	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000898
SNU719_STOMACH	SNHG16--EHBP1	1	1	SNHG16	4633	chr17:74557480:+	EHBP1	28148	chr2:63169853:+	ONLY_REF_SPLICE	YES	335	311	0.01	0.01	0.0131	0.0131	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+	SNU719_STOMACH	0.01	0.01	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000898
KNS42_CENTRAL_NERVOUS_SYSTEM	RPL14--AC005540.3	232	0	RPL14	4483	chr3:40503515:+	AC005540.3	8966	chr2:191745649:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	3.2246	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	3.2246	TRUE	1	3	0	5	3	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	GORASP2--CDADC1	147	55	GORASP2	10899	chr2:171813069:+	CDADC1	25440	chr13:49848427:+	ONLY_REF_SPLICE	YES	143	8	0.59	0.96	2.0432	0.7645	GORASP2->chr2:171784974-171823639:+,golgi_reassembly_stacking_protein_2,CDADC1->chr13:49822047-49867618:+,cytidine_and_dCMP_deaminase_domain_containing_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.59	0.96	2.8077	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	NUTF2--PRMT7	62	1	NUTF2	1254	chr16:67880888:+	PRMT7	17434	chr16:68358586:+	ONLY_REF_SPLICE	YES	0	29	1	0.68	0.8617	0.0139	NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2,PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7	KNS42_CENTRAL_NERVOUS_SYSTEM	0.68	1	0.8756	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	CLIC5--AC010883.5	46	16	CLIC5	7603	chr6:45909284:-	AC010883.5	25484	chr2:43459874:+	INCL_NON_REF_SPLICE	YES	147	0	0.3	1	0.6394	0.2224	CLIC5->chloride_intracellular_channel_5,chr6:45868045-46048132:-,AC010883.5->chr2:43456712-43460533:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.3	1	0.8618	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	44	10	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6116	0.139	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.7506	TRUE	508	994	45	981	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	C17orf62--STRA13	36	12	C17orf62	5966	chr17:80403740:-	STRA13	14565	chr17:79977785:-	ONLY_REF_SPLICE	YES	95	22	0.34	0.69	0.5004	0.1668	C17orf62->chr17:80400465-80408705:-,chromosome_17_open_reading_frame_62,STRA13->chr17:79976578-79981983:-,stimulated_by_retinoic_acid_13	KNS42_CENTRAL_NERVOUS_SYSTEM	0.34	0.69	0.6672	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	PTBP2--MYSM1	33	23	PTBP2	10604	chr1:97250810:+	MYSM1	45970	chr1:59127183:-	ONLY_REF_SPLICE	YES	10	20	0.85	0.74	0.4587	0.3197	PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,MYSM1->Myb_like,_SWIRM_and_MPN_domains_1,chr1:59120411-59165764:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.74	0.85	0.7784	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	35	15	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	6	1	0.89	0.4865	0.2085	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.695	TRUE	477	1352	189	275	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	ZNF605--TWF1	36	9	ZNF605	5653	chr12:133509621:-	TWF1	24665	chr12:44189558:-	ONLY_REF_SPLICE	YES	10	251	0.82	0.15	0.5004	0.1251	ZNF605->chr12:133498019-133532892:-,zinc_finger_protein_605,TWF1->chr12:44187526-44200178:-,twinfilin_actin_binding_protein_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.15	0.82	0.6255	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MPHOSPH9--C12orf55	25	28	MPHOSPH9	13160	chr12:123694603:-	C12orf55	103164	chr12:97186149:+	INCL_NON_REF_SPLICE	YES	29	0	0.65	1	0.3475	0.3892	MPHOSPH9->M-phase_phosphoprotein_9,chr12:123636867-123728561:-,C12orf55->chr12:96883349-97269333:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.65	1	0.7367	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	29	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.4031	0.0556	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.4587	FALSE	292	1546	117	613	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	NUTF2--PRMT7	26	9	NUTF2	1725	chr16:67881359:+	PRMT7	17434	chr16:68358586:+	ONLY_REF_SPLICE	YES	21	29	0.62	0.55	0.3614	0.1251	NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2,PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7	KNS42_CENTRAL_NERVOUS_SYSTEM	0.55	0.62	0.4865	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	26	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	184	3	0.13	0.9	0.3614	0.0278	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.13	0.9	0.3892	TRUE	519	3926	326	965	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RPL14--AC005540.3	26	0	RPL14	4486	chr3:40503518:+	AC005540.3	8972	chr2:191745643:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3614	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.3614	TRUE	1	3	0	5	3	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MPHOSPH9--C12orf55	15	31	MPHOSPH9	13160	chr12:123694603:-	C12orf55	103122	chr12:97186107:+	ONLY_REF_SPLICE	YES	29	0	0.61	1	0.2085	0.4309	MPHOSPH9->M-phase_phosphoprotein_9,chr12:123636867-123728561:-,C12orf55->chr12:96883349-97269333:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.61	1	0.6394	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	CLIC5--AC010883.5	19	12	CLIC5	7603	chr6:45909284:-	AC010883.5	25513	chr2:43459903:+	ONLY_REF_SPLICE	YES	147	0	0.17	1	0.2641	0.1668	CLIC5->chloride_intracellular_channel_5,chr6:45868045-46048132:-,AC010883.5->chr2:43456712-43460533:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.17	1	0.4309	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	21	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2919	0.0139	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.3058	FALSE	462	80	0	856	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	TRAPPC8--DSC1	17	10	TRAPPC8	23878	chr18:29444590:-	DSC1	41860	chr18:28739492:-	ONLY_REF_SPLICE	YES	28	1	0.49	0.96	0.2363	0.139	TRAPPC8->chr18:29409136-29533099:-,trafficking_protein_particle_complex_8,DSC1->chr18:28709199-28742819:-,desmocollin_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.49	0.96	0.3753	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	19	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2641	0.0139	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.278	FALSE	499	1288	110	792	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	LMBRD1--RP1-177I10.1	17	7	LMBRD1	14756	chr6:70407455:-	RP1-177I10.1	21294	chr6:92100262:-	ONLY_REF_SPLICE	YES	72	0	0.25	1	0.2363	0.0973	LMBRD1->LMBR1_domain_containing_1,chr6:70385694-70507003:-,RP1-177I10.1->chr6:92100031-92102718:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.25	1	0.3336	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	CADPS--FHIT	13	2	CADPS	32585	chr3:62477014:-	FHIT	59604	chr3:61027771:-	ONLY_REF_SPLICE	YES	24	1	0.38	0.94	0.1807	0.0278	CADPS->Ca2+_dependent_secretion_activator,chr3:62384022-62861054:-,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	KNS42_CENTRAL_NERVOUS_SYSTEM	0.38	0.94	0.2085	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RPL14--AC005540.3	13	0	RPL14	4486	chr3:40503518:+	AC005540.3	8975	chr2:191745640:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1807	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.1807	TRUE	1	3	0	5	3	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	9	13	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	6	1	0.79	0.1251	0.1807	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.79	1	0.3058	TRUE	274	363	69	150	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MPHOSPH9--C12orf55	3	33	MPHOSPH9	13160	chr12:123694603:-	C12orf55	102057	chr12:97180612:+	INCL_NON_REF_SPLICE	YES	29	1	0.55	0.97	0.0417	0.4587	MPHOSPH9->M-phase_phosphoprotein_9,chr12:123636867-123728561:-,C12orf55->chr12:96883349-97269333:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.55	0.97	0.5004	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	9	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.1251	0.0973	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS42_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.2224	FALSE	499	1288	110	792	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	FRY--CYBRD1	9	6	FRY	40493	chr13:32800111:+	CYBRD1	79331	chr2:172409856:+	ONLY_REF_SPLICE	YES	1	300	0.94	0.05	0.1251	0.0834	FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+,CYBRD1->chr2:172378757-172414643:+,cytochrome_b_reductase_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.05	0.94	0.2085	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MPHOSPH9--C12orf55	2	33	MPHOSPH9	13160	chr12:123694603:-	C12orf55	101898	chr12:97180453:+	ONLY_REF_SPLICE	YES	29	0	0.55	1	0.0278	0.4587	MPHOSPH9->M-phase_phosphoprotein_9,chr12:123636867-123728561:-,C12orf55->chr12:96883349-97269333:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.55	1	0.4865	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	10	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.139	0.0139	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.1529	FALSE	499	1288	110	792	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	C6orf141--ZNF529	10	0	C6orf141	5089	chr6:49522870:+	ZNF529	13907	chr19:37073608:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.139	0	GTEx_FI:{Brain=[count:22=pct:3.3],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Breast=[count:1=pct:0.9]},C6orf141->chr6:49518113-49529620:+,chromosome_6_open_reading_frame_141,ZNF529->chr19:37025676-37096178:-,zinc_finger_protein_529	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.139	TRUE	23	15	0	4	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	GORASP2--CDADC1	1	36	GORASP2	10899	chr2:171813069:+	CDADC1	26490	chr13:49852486:+	ONLY_REF_SPLICE	YES	143	10	0.21	0.79	0.0139	0.5004	GORASP2->chr2:171784974-171823639:+,golgi_reassembly_stacking_protein_2,CDADC1->chr13:49822047-49867618:+,cytidine_and_dCMP_deaminase_domain_containing_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.21	0.79	0.5143	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	NIPA2--POLA1	10	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.139	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.139	TRUE	46	1352	75	139	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	8	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	57	74	0.21	0.17	0.1112	0.0973	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KNS42_CENTRAL_NERVOUS_SYSTEM	0.17	0.21	0.2085	TRUE	267	562	48	632	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MPHOSPH9--C12orf55	6	14	MPHOSPH9	13160	chr12:123694603:-	C12orf55	104293	chr12:97205514:+	ONLY_REF_SPLICE	YES	29	7	0.41	0.74	0.0834	0.1946	MPHOSPH9->M-phase_phosphoprotein_9,chr12:123636867-123728561:-,C12orf55->chr12:96883349-97269333:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.41	0.74	0.278	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	PTBP2--MYSM1	3	24	PTBP2	10604	chr1:97250810:+	MYSM1	44837	chr1:59131303:-	ONLY_REF_SPLICE	YES	10	26	0.73	0.51	0.0417	0.3336	PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,MYSM1->Myb_like,_SWIRM_and_MPN_domains_1,chr1:59120411-59165764:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.51	0.73	0.3753	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	CTB-78F1.2--TENM2	8	1	CTB-78F1.2	1045	chr5:167148412:+	TENM2	11546	chr5:167302991:+	ONLY_REF_SPLICE	YES	0	5	1	0.64	0.1112	0.0139	NEIGHBORS_OVERLAP:+:+:[7761],CTB-78F1.2->chr5:167148368-167156129:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	KNS42_CENTRAL_NERVOUS_SYSTEM	0.64	1	0.1251	FALSE	1	3	0	6	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	TRAPPC8--DSC1	5	13	TRAPPC8	23878	chr18:29444590:-	DSC1	40543	chr18:28742811:-	INCL_NON_REF_SPLICE	YES	28	0	0.39	1	0.0695	0.1807	TRAPPC8->chr18:29409136-29533099:-,trafficking_protein_particle_complex_8,DSC1->chr18:28709199-28742819:-,desmocollin_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.39	1	0.2502	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	6	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	28	1	0.26	0.0834	0.0556	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.26	1	0.139	FALSE	16	356	14	466	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.0556	0.1251	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS42_CENTRAL_NERVOUS_SYSTEM	0.87	1	0.1807	FALSE	499	1288	110	792	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	ARID2--ITGA5	5	4	ARID2	2571	chr12:46125097:+	ITGA5	35959	chr12:54805748:-	ONLY_REF_SPLICE	YES	14	12	0.39	0.43	0.0695	0.0556	ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,ITGA5->chr12:54789045-54813244:-,integrin_subunit_alpha_5	KNS42_CENTRAL_NERVOUS_SYSTEM	0.39	0.43	0.1251	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RPL14--AC005540.3	6	0	RPL14	4495	chr3:40503527:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0834	TRUE	1	3	0	5	3	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RPL14--AC005540.3	6	0	RPL14	4492	chr3:40503524:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0834	TRUE	1	3	0	5	3	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	TRAPPC8--DSC1	3	11	TRAPPC8	23878	chr18:29444590:-	DSC1	40674	chr18:28742680:-	INCL_NON_REF_SPLICE	YES	28	0	0.33	1	0.0417	0.1529	TRAPPC8->chr18:29409136-29533099:-,trafficking_protein_particle_complex_8,DSC1->chr18:28709199-28742819:-,desmocollin_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.1946	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	ERBB4--AC079610.1	5	2	ERBB4	1393	chr2:213403173:-	AC079610.1	50458	chr2:213446132:-	ONLY_REF_SPLICE	YES	9	0	0.44	1	0.0695	0.0278	LOCAL_REARRANGEMENT:-:[42516],ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,AC079610.1->chr2:213446081-213886269:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.44	1	0.0973	TRUE	0	2	0	3	2	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	C15orf57--CBX3	4	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	54	74	0.14	0.11	0.0556	0.0695	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KNS42_CENTRAL_NERVOUS_SYSTEM	0.11	0.14	0.1251	TRUE	267	562	48	632	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	C17orf62--STRA13	5	0	C17orf62	1130	chr17:80408576:-	STRA13	14565	chr17:79977785:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0695	0	C17orf62->chr17:80400465-80408705:-,chromosome_17_open_reading_frame_62,STRA13->chr17:79976578-79981983:-,stimulated_by_retinoic_acid_13	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0695	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0695	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0695	FALSE	462	80	0	856	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	4	4	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	28	0.89	0.22	0.0556	0.0556	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.22	0.89	0.1112	FALSE	2	31	0	60	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RPL14--AC005540.3	5	0	RPL14	4498	chr3:40503530:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0695	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0695	TRUE	1	3	0	5	3	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RPL14--AC005540.3	5	0	RPL14	4487	chr3:40503519:+	AC005540.3	8967	chr2:191745648:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0695	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0695	TRUE	1	3	0	5	3	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	3	7	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0417	0.0973	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KNS42_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.139	FALSE	499	1288	110	792	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	1	15	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	6	1	0.73	0.0139	0.2085	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.73	1	0.2224	TRUE	160	277	29	98	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	DNAJC25--UGCG	4	1	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	156	65	0.03	0.07	0.0556	0.0139	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.03	0.07	0.0695	TRUE	50	73	10	50	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	SYT1--RP11-171L9.1	4	1	SYT1	18973	chr12:79693331:+	RP11-171L9.1	31828	chr12:78842981:-	ONLY_REF_SPLICE	YES	10	0	0.33	1	0.0556	0.0139	SYT1->chr12:79257773-79845788:+,synaptotagmin_1,RP11-171L9.1->chr12:78842775-78934455:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.33	1	0.0695	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0556	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0556	FALSE	189	492	56	216	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	3	4	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	0	28	1	0.2	0.0417	0.0556	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.2	1	0.0973	FALSE	0	9	0	55	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RPL14--AC005540.3	4	0	RPL14	4485	chr3:40503517:+	AC005540.3	8959	chr2:191745656:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0556	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0556	TRUE	1	3	0	5	3	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	ZNF385B--URI1	4	0	ZNF385B	13883	chr2:180427126:-	URI1	37837	chr19:30462100:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0556	0	ZNF385B->chr2:180306709-180726232:-,zinc_finger_protein_385B,URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	COG5--SLC26A4-AS1	3	3	COG5	6059	chr7:107188556:-	SLC26A4-AS1	34462	chr7:107302267:-	INCL_NON_REF_SPLICE	YES	30	0	0.17	1	0.0417	0.0417	LOCAL_REARRANGEMENT:-:[89462],COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5,SLC26A4-AS1->SLC26A4_antisense_RNA_1,chr7:107294421-107302596:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.17	1	0.0834	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	3	3	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0417	0.0417	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0834	FALSE	189	492	56	216	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	CHSY3--HSPA8P4	3	1	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	23	0	0.15	1	0.0417	0.0139	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	KNS42_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.0556	FALSE	89	26	1	44	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	NUTF2--PRMT7	3	1	NUTF2	1254	chr16:67880888:+	PRMT7	19578	chr16:68362969:+	ONLY_REF_SPLICE	YES	0	67	1	0.06	0.0417	0.0139	NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2,PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7	KNS42_CENTRAL_NERVOUS_SYSTEM	0.06	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MT-CO2--GFAP	3	0	MT-CO2	1235	chrM:7820:+	GFAP	14169	chr17:42984377:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0417	0	MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,GFAP->chr17:42982376-42994305:-,glial_fibrillary_acidic_protein	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0417	FALSE	11	0	0	3	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	MT-CO3--MT-ATP6	3	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0417	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0417	FALSE	189	492	56	216	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0417	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0417	TRUE	0	0	0	434	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.43	1	0.0278	0.0556	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.43	1	0.0834	FALSE	125	705	46	456	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RP11-120D5.1--MID1	2	4	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	28	0.67	0.18	0.0278	0.0556	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.18	0.67	0.0834	FALSE	0	48	1	163	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	VAPA--RAB31	3	0	VAPA	1334	chr18:9914332:+	RAB31	35016	chr18:9845579:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0417	0	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Adrenal_Gland=1,Whole_Blood=1},{Klijn_CCL:Lung=1,Head-Neck=1},LOCAL_REARRANGEMENT:+:[51451],VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0417	TRUE	3	3	0	4	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	AFTPH--DNMT3A	2	2	AFTPH	4249	chr2:64780543:+	DNMT3A	18911	chr2:25537030:-	ONLY_REF_SPLICE	YES	55	0	0.07	1	0.0278	0.0278	AFTPH->aftiphilin,chr2:64751465-64820139:+,DNMT3A->ArcherDX_panel,DNA_(cytosine-5-)-methyltransferase_3_alpha,FoundationOne_panel,Oncogene{Bushman},chr2:25455845-25565459:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	COG5--SLC26A4-AS1	2	2	COG5	6059	chr7:107188556:-	SLC26A4-AS1	41640	chr7:107294678:-	ONLY_REF_SPLICE	YES	30	0	0.12	1	0.0278	0.0278	LOCAL_REARRANGEMENT:-:[89462],COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5,SLC26A4-AS1->SLC26A4_antisense_RNA_1,chr7:107294421-107302596:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.12	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	COG5--SLC26A4-AS1	2	2	COG5	6059	chr7:107188556:-	SLC26A4-AS1	34526	chr7:107302203:-	ONLY_REF_SPLICE	YES	30	0	0.12	1	0.0278	0.0278	LOCAL_REARRANGEMENT:-:[89462],COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5,SLC26A4-AS1->SLC26A4_antisense_RNA_1,chr7:107294421-107302596:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.12	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	DPH6-AS1--RP11-684B21.1	2	1	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0278	0.0139	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.6	1	0.0417	TRUE	17	119	17	33	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	NUTF2--PRMT7	2	1	NUTF2	1254	chr16:67880888:+	PRMT7	20739	chr16:68371362:+	ONLY_REF_SPLICE	YES	0	86	1	0.03	0.0278	0.0139	NUTF2->chr16:67880635-67906470:+,nuclear_transport_factor_2,PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7	KNS42_CENTRAL_NERVOUS_SYSTEM	0.03	1	0.0417	TRUE	0	0	0	1	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	21326	chr12:23908658:-	ONLY_REF_SPLICE	YES	0	17	1	0.15	0.0278	0.0139	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.15	1	0.0417	TRUE	0	1	0	5	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	AC074011.2--PPP1CB	2	0	AC074011.2	1459	chr2:28886948:-	PPP1CB	7119	chr2:28999717:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	LOCAL_INVERSION:-:+:[87100],AC074011.2->chr2:28856148-28887406:-,PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	CPSF6--SLC44A5	2	0	CPSF6	11046	chr12:69656342:+	SLC44A5	47198	chr1:75669518:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SLC44A5->chr1:75667816-76076801:-,solute_carrier_family_44_member_5	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	CTB-78F1.2--TENM2	2	0	CTB-78F1.2	1045	chr5:167148412:+	TENM2	14028	chr5:167379593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	NEIGHBORS_OVERLAP:+:+:[7761],CTB-78F1.2->chr5:167148368-167156129:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	FALSE	1	4	0	8	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	11	0	0.31	1	0.0139	0.0556	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.0695	FALSE	164	806	69	479	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	SCARB1--UBC	2	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	55	66	6	101	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	TMCO3--CUL4A	2	0	TMCO3	12355	chr13:114193822:+	CUL4A	41014	chr13:113917801:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3,CUL4A->chr13:113862552-113919399:+,cullin_4A	KNS42_CENTRAL_NERVOUS_SYSTEM	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	GDAP1--RP11-758M4.1	1	3	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	52	0	0.07	1	0.0139	0.0417	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.07	1	0.0556	TRUE	7	28	0	43	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	ZNF605--TWF1	1	3	ZNF605	3709	chr12:133522207:-	TWF1	24665	chr12:44189558:-	ONLY_REF_SPLICE	YES	20	251	0.17	0.02	0.0139	0.0417	ZNF605->chr12:133498019-133532892:-,zinc_finger_protein_605,TWF1->chr12:44187526-44200178:-,twinfilin_actin_binding_protein_1	KNS42_CENTRAL_NERVOUS_SYSTEM	0.02	0.17	0.0556	TRUE	0	0	0	1	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	CRIM1--FEZ2	1	1	CRIM1	18863	chr2:36749456:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	192	259	0.01	0.01	0.0139	0.0139	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	KNS42_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0278	FALSE	2	2	0	15	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	CTDSPL2--CASC4	1	1	CTDSPL2	1539	chr15:44719970:+	CASC4	38385	chr15:44671888:+	ONLY_REF_SPLICE	YES	48	256	0.04	0.01	0.0139	0.0139	LOCAL_REARRANGEMENT:+:[11476],CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+	KNS42_CENTRAL_NERVOUS_SYSTEM	0.01	0.04	0.0278	FALSE	0	0	0	4	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	KIF20B--PCGF5	1	1	KIF20B	30644	chr10:91522592:+	PCGF5	47611	chr10:93021083:+	ONLY_REF_SPLICE	NO	61	107	0.03	0.02	0.0139	0.0139	KIF20B->chr10:91461367-91534700:+,kinesin_family_member_20B,PCGF5->chr10:92979908-93044088:+,polycomb_group_ring_finger_5	KNS42_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	NCOR2--UBC	1	1	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	3	97	0.4	0.02	0.0139	0.0139	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	KNS42_CENTRAL_NERVOUS_SYSTEM	0.02	0.4	0.0278	TRUE	145	312	16	51	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	2	8	0.5	0.2	0.0139	0.0139	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KNS42_CENTRAL_NERVOUS_SYSTEM	0.2	0.5	0.0278	FALSE	25	145	6	90	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	RP1-34H18.1--NAV3	1	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	NO	0	1	1	0.67	0.0139	0.0139	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	KNS42_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.0278	TRUE	254	575	65	124	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	STYXL1--POR	1	1	STYXL1	1193	chr7:75677130:-	POR	27273	chr7:75601731:+	ONLY_REF_SPLICE	YES	68	270	0.03	0.01	0.0139	0.0139	LOCAL_INVERSION:-:+:[9483],STYXL1->chr7:75625656-75677322:-,serine/threonine/tyrosine_interacting-like_1,POR->chr7:75528518-75616173:+,cytochrome_p450_oxidoreductase	KNS42_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	UBL5--MED19	1	1	UBL5	1498	chr19:9939065:+	MED19	8317	chr11:57471868:-	ONLY_REF_SPLICE	NO	658	87	0	0.02	0.0139	0.0139	UBL5->chr19:9938568-9940791:+,ubiquitin_like_5,MED19->chr11:57471186-57479693:-,mediator_complex_subunit_19	KNS42_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0278	FALSE	0	0	0	4	0	FALSE	ACH-000622
KNS42_CENTRAL_NERVOUS_SYSTEM	ZNF436--TCEA3	1	1	ZNF436	1077	chr1:23695859:-	TCEA3	12599	chr1:23745632:-	ONLY_REF_SPLICE	YES	41	3	0.05	0.4	0.0139	0.0139	LOCAL_REARRANGEMENT:-:[11619],ZNF436->chr1:23685941-23695935:-,zinc_finger_protein_436,TCEA3->chr1:23707554-23751233:-,transcription_elongation_factor_A3	KNS42_CENTRAL_NERVOUS_SYSTEM	0.05	0.4	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000622
647V_URINARY_TRACT	PTK2--TRAPPC9	638	189	PTK2	2092	chr8:142011224:-	TRAPPC9	94279	chr8:140999044:-	ONLY_REF_SPLICE	YES	25	20	0.97	0.98	7.8718	2.3319	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	647V_URINARY_TRACT	0.97	0.98	10.2037	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	ARHGAP23--MRPL45	123	60	ARHGAP23	17583	chr17:36642381:+	MRPL45	35351	chr17:36462500:+	ONLY_REF_SPLICE	YES	222	203	0.45	0.47	1.5176	0.7403	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45	647V_URINARY_TRACT	0.45	0.47	2.2579	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	PTK2--TRAPPC9	55	207	PTK2	2337	chr8:142010979:-	TRAPPC9	94279	chr8:140999044:-	ONLY_REF_SPLICE	YES	48	20	0.85	0.93	0.6786	2.554	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	647V_URINARY_TRACT	0.85	0.93	3.2326	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	PTK2--TRAPPC9	32	230	PTK2	3651	chr8:141993941:-	TRAPPC9	94279	chr8:140999044:-	ONLY_REF_SPLICE	YES	30	20	0.9	0.93	0.3948	2.8378	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	647V_URINARY_TRACT	0.9	0.93	3.2326	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	C15orf39--ADPGK	56	48	C15orf39	3572	chr15:75494400:+	ADPGK	16713	chr15:73067438:-	ONLY_REF_SPLICE	YES	85	205	0.55	0.34	0.6909	0.5922	C15orf39->chr15:75487984-75504510:+,chromosome_15_open_reading_frame_39,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	647V_URINARY_TRACT	0.34	0.55	1.2831	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	MT-TA--MT-TC	57	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7033	0.0864	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	647V_URINARY_TRACT	1	1	0.7897	FALSE	462	80	0	856	0	FALSE	ACH-000896
647V_URINARY_TRACT	PTK2--TRAPPC9	5	211	PTK2	3415	chr8:141994177:-	TRAPPC9	94279	chr8:140999044:-	ONLY_REF_SPLICE	YES	46	20	0.82	0.92	0.0617	2.6034	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	647V_URINARY_TRACT	0.82	0.92	2.6651	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	TIMM23B--LINC00843	53	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6539	0.1604	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	647V_URINARY_TRACT	1	1	0.8143	TRUE	508	994	45	981	0	FALSE	ACH-000896
647V_URINARY_TRACT	RORA--ANXA2	42	18	RORA	13827	chr15:60884586:-	ANXA2	63129	chr15:60649435:-	ONLY_REF_SPLICE	YES	2	6964	0.97	0.01	0.5182	0.2221	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	647V_URINARY_TRACT	0.01	0.97	0.7403	FALSE	0	0	0	1	0	FALSE	ACH-000896
647V_URINARY_TRACT	PTK2--TRAPPC9	24	86	PTK2	2092	chr8:142011224:-	TRAPPC9	95390	chr8:140922544:-	ONLY_REF_SPLICE	YES	25	172	0.81	0.39	0.2961	1.0611	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	647V_URINARY_TRACT	0.39	0.81	1.3572	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	SVIP--CCDC179	37	17	SVIP	3714	chr11:22848753:-	CCDC179	16394	chr11:22869067:-	ONLY_REF_SPLICE	YES	182	0	0.23	1	0.4565	0.2098	LOCAL_REARRANGEMENT:-:[16632],SVIP->chr11:22835345-22851845:-,small_VCP/p97-interacting_protein,CCDC179->chr11:22868477-22881972:-,coiled-coil_domain_containing_179	647V_URINARY_TRACT	0.23	1	0.6663	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	TIMM23--RP11-464F9.1	38	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	211	1	0.16	0.97	0.4689	0.0123	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	647V_URINARY_TRACT	0.16	0.97	0.4812	TRUE	519	3926	326	965	0	FALSE	ACH-000896
647V_URINARY_TRACT	KANSL1--ARL17B	32	9	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	36	28	0.53	0.59	0.3948	0.111	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	647V_URINARY_TRACT	0.53	0.59	0.5058	TRUE	181	1564	124	196	0	FALSE	ACH-000896
647V_URINARY_TRACT	CHCHD6--ALDH1L1-AS2	25	10	CHCHD6	4504	chr3:126452065:+	ALDH1L1-AS2	21398	chr3:125927169:+	ONLY_REF_SPLICE	YES	121	0	0.22	1	0.3085	0.1234	CHCHD6->chr3:126423063-126679249:+,coiled-coil-helix-coiled-coil-helix_domain_containing_6,ALDH1L1-AS2->ALDH1L1_antisense_RNA_2,chr3:125898908-125929012:+	647V_URINARY_TRACT	0.22	1	0.4319	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	PTK2--TRAPPC9	1	103	PTK2	3651	chr8:141993941:-	TRAPPC9	95390	chr8:140922544:-	ONLY_REF_SPLICE	YES	30	172	0.78	0.38	0.0123	1.2708	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	647V_URINARY_TRACT	0.38	0.78	1.2831	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	PTK2--TRAPPC9	2	93	PTK2	2337	chr8:142010979:-	TRAPPC9	95390	chr8:140922544:-	ONLY_REF_SPLICE	YES	48	172	0.66	0.36	0.0247	1.1475	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	647V_URINARY_TRACT	0.36	0.66	1.1722	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	RP11-123O10.4--GRIP1	21	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2591	0.0494	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	647V_URINARY_TRACT	1	1	0.3085	FALSE	416	2512	207	587	0	FALSE	ACH-000896
647V_URINARY_TRACT	HSP90AB1--MT-RNR2	21	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3954	0	0.01	1	0.2591	0.0123	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	647V_URINARY_TRACT	0.01	1	0.2714	FALSE	13	9	0	364	0	FALSE	ACH-000896
647V_URINARY_TRACT	PLCG1--PHACTR3	21	0	PLCG1	1076	chr20:39765675:+	PHACTR3	36754	chr20:58381096:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2591	0	PLCG1->chr20:39765600-39811629:+,phospholipase_C_gamma_1,PHACTR3->chr20:58152564-58422766:+,phosphatase_and_actin_regulator_3	647V_URINARY_TRACT	1	1	0.2591	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	C15orf39--ADPGK	5	50	C15orf39	3572	chr15:75494400:+	ADPGK	13958	chr15:73078187:-	ONLY_REF_SPLICE	YES	85	0	0.39	1	0.0617	0.6169	C15orf39->chr15:75487984-75504510:+,chromosome_15_open_reading_frame_39,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	647V_URINARY_TRACT	0.39	1	0.6786	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	SLC27A5--MAST2	16	1	SLC27A5	9320	chr19:59010490:-	MAST2	25153	chr1:46425058:+	ONLY_REF_SPLICE	YES	6	47	0.74	0.27	0.1974	0.0123	SLC27A5->chr19:58990879-59023780:-,solute_carrier_family_27_member_5,MAST2->chr1:46252659-46501796:+,microtubule_associated_serine/threonine_kinase_2	647V_URINARY_TRACT	0.27	0.74	0.2097	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	PTK2--TRAPPC9	16	0	PTK2	1203	chr8:142012113:-	TRAPPC9	94279	chr8:140999044:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1974	0	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	647V_URINARY_TRACT	1	1	0.1974	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	HSP90AB1--MT-RNR2	15	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3902	0	0	1	0.1851	0.0123	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	647V_URINARY_TRACT	0	1	0.1974	FALSE	13	9	0	364	0	FALSE	ACH-000896
647V_URINARY_TRACT	C15orf39--ADPGK	10	19	C15orf39	3572	chr15:75494400:+	ADPGK	19002	chr15:73052868:-	ONLY_REF_SPLICE	YES	85	209	0.25	0.12	0.1234	0.2344	C15orf39->chr15:75487984-75504510:+,chromosome_15_open_reading_frame_39,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	647V_URINARY_TRACT	0.12	0.25	0.3578	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	C15orf39--ADPGK	1	48	C15orf39	3939	chr15:75494767:+	ADPGK	16713	chr15:73067438:-	ONLY_REF_SPLICE	NO	96	205	0.34	0.19	0.0123	0.5922	C15orf39->chr15:75487984-75504510:+,chromosome_15_open_reading_frame_39,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	647V_URINARY_TRACT	0.19	0.34	0.6045	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	ZNF654--HMGB2	13	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1604	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	647V_URINARY_TRACT	1	1	0.1604	TRUE	0	0	0	518	0	FALSE	ACH-000896
647V_URINARY_TRACT	PLXNA1--CHCHD6	12	2	PLXNA1	8201	chr3:126726756:+	CHCHD6	39841	chr3:126633523:+	ONLY_REF_SPLICE	YES	137	125	0.09	0.1	0.1481	0.0247	YOSHIHARA_TCGA_num_samples[BLCA:1|PRAD:1],LOCAL_REARRANGEMENT:+:[28188],PLXNA1->chr3:126707437-126756235:+,plexin_A1,CHCHD6->chr3:126423063-126679249:+,coiled-coil-helix-coiled-coil-helix_domain_containing_6	647V_URINARY_TRACT	0.09	0.1	0.1728	TRUE	0	0	0	1	0	FALSE	ACH-000896
647V_URINARY_TRACT	MT-ND6--MT-TE	9	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.111	0.0987	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	647V_URINARY_TRACT	0.94	1	0.2097	FALSE	499	1288	110	792	0	FALSE	ACH-000896
647V_URINARY_TRACT	ARHGAP23--MRPL45	1	39	ARHGAP23	16504	chr17:36638919:+	MRPL45	35351	chr17:36462500:+	ONLY_REF_SPLICE	NO	228	203	0.15	0.16	0.0123	0.4812	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45	647V_URINARY_TRACT	0.15	0.16	0.4935	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	MT-ND6--MT-TE	10	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1234	0.0247	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	647V_URINARY_TRACT	1	1	0.1481	FALSE	499	1288	110	792	0	FALSE	ACH-000896
647V_URINARY_TRACT	MT-ND6--MT-TE	10	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1234	0.0247	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	647V_URINARY_TRACT	1	1	0.1481	FALSE	499	1288	110	792	0	FALSE	ACH-000896
647V_URINARY_TRACT	MT-TA--MT-TC	9	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.111	0.074	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	647V_URINARY_TRACT	1	1	0.185	FALSE	462	80	0	856	0	FALSE	ACH-000896
647V_URINARY_TRACT	MT-TA--MT-TC	10	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1234	0.0123	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	647V_URINARY_TRACT	1	1	0.1357	FALSE	462	80	0	856	0	FALSE	ACH-000896
647V_URINARY_TRACT	MT-TA--MT-TC	8	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0987	0.111	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	647V_URINARY_TRACT	1	1	0.2097	FALSE	462	80	0	856	0	FALSE	ACH-000896
647V_URINARY_TRACT	RP11-351I24.1--SBF2	10	1	RP11-351I24.1	1409	chr11:10324843:-	SBF2	31377	chr11:9879943:-	ONLY_REF_SPLICE	YES	1	12	0.92	0.48	0.1234	0.0123	NEIGHBORS[8450],RP11-351I24.1->chr11:10324204-10325251:-,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	647V_URINARY_TRACT	0.48	0.92	0.1357	FALSE	0	0	0	2	0	FALSE	ACH-000896
647V_URINARY_TRACT	C15orf39--ADPGK	4	20	C15orf39	3572	chr15:75494400:+	ADPGK	17939	chr15:73064186:-	ONLY_REF_SPLICE	YES	85	150	0.22	0.14	0.0494	0.2468	C15orf39->chr15:75487984-75504510:+,chromosome_15_open_reading_frame_39,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	647V_URINARY_TRACT	0.14	0.22	0.2962	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	PPHLN1--ATXN1	8	3	PPHLN1	19729	chr12:42792796:+	ATXN1	42752	chr6:16658132:-	ONLY_REF_SPLICE	YES	97	25	0.1	0.31	0.0987	0.037	PPHLN1->chr12:42632249-42853517:+,periphilin_1,ATXN1->ataxin_1,chr6:16299343-16761722:-	647V_URINARY_TRACT	0.1	0.31	0.1357	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	CCNYL1--NRP2	7	4	CCNYL1	5170	chr2:208591600:+	NRP2	39629	chr2:206628398:+	ONLY_REF_SPLICE	YES	63	0	0.15	1	0.0864	0.0494	CCNYL1->chr2:208576264-208626563:+,cyclin_Y_like_1,NRP2->chr2:206546714-206662857:+,neuropilin_2	647V_URINARY_TRACT	0.15	1	0.1358	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	MT-TA--MT-TY	8	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0987	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	647V_URINARY_TRACT	1	1	0.0987	FALSE	13	214	14	42	0	FALSE	ACH-000896
647V_URINARY_TRACT	NPM1P24--SET	8	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0987	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	647V_URINARY_TRACT	1	1	0.0987	TRUE	0	0	0	434	0	FALSE	ACH-000896
647V_URINARY_TRACT	ARHGAP23--MRPL45	1	26	ARHGAP23	17583	chr17:36642381:+	MRPL45	36816	chr17:36474586:+	ONLY_REF_SPLICE	NO	222	165	0.11	0.14	0.0123	0.3208	ARHGAP23->Rho_GTPase_activating_protein_23,chr17:36584662-36668628:+,MRPL45->chr17:36452989-36479101:+,mitochondrial_ribosomal_protein_L45	647V_URINARY_TRACT	0.11	0.14	0.3331	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	ERBB2IP--NLN	7	1	ERBB2IP	19029	chr5:65340138:+	NLN	56094	chr5:65118609:+	ONLY_REF_SPLICE	YES	88	66	0.08	0.11	0.0864	0.0123	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_REARRANGEMENT:+:[54750],ERBB2IP->chr5:65222303-65378377:+,NLN->chr5:65018023-65167553:+,neurolysin	647V_URINARY_TRACT	0.08	0.11	0.0987	TRUE	0	0	0	1	0	FALSE	ACH-000896
647V_URINARY_TRACT	NCOA6--GSS	5	5	NCOA6	22411	chr20:33324494:-	GSS	33321	chr20:33539663:-	ONLY_REF_SPLICE	YES	58	4	0.15	0.71	0.0617	0.0617	NCOA6->Oncogene{Bushman},chr20:33284722-33413452:-,nuclear_receptor_coactivator_6,GSS->chr20:33516236-33543620:-,glutathione_synthetase	647V_URINARY_TRACT	0.15	0.71	0.1234	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	F3--S100A6	6	0	F3	1194	chr1:95007163:-	S100A6	11318	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0	F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	647V_URINARY_TRACT	1	1	0.074	TRUE	0	0	0	3	0	TRUE	ACH-000896
647V_URINARY_TRACT	FTH1--ACTB	6	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.074	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	647V_URINARY_TRACT	1	1	0.074	TRUE	1	0	0	97	0	FALSE	ACH-000896
647V_URINARY_TRACT	JUP--MT-CO3	5	2	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	919	15226	0.01	0	0.0617	0.0247	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	647V_URINARY_TRACT	0	0.01	0.0864	FALSE	0	0	0	33	0	FALSE	ACH-000896
647V_URINARY_TRACT	RORA--ANXA2	1	18	RORA	13827	chr15:60884586:-	ANXA2	59082	chr15:60656722:-	ONLY_REF_SPLICE	YES	2	5455	0.9	0	0.0123	0.2221	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	647V_URINARY_TRACT	0	0.9	0.2344	FALSE	2	1	0	8	0	FALSE	ACH-000896
647V_URINARY_TRACT	MT-TA--MT-TC	4	5	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0494	0.0617	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	647V_URINARY_TRACT	1	1	0.1111	FALSE	462	80	0	856	0	FALSE	ACH-000896
647V_URINARY_TRACT	FTH1--ACTB	5	0	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0617	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	647V_URINARY_TRACT	1	1	0.0617	TRUE	1	0	0	97	0	FALSE	ACH-000896
647V_URINARY_TRACT	MT-TA--MT-TC	3	8	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0.0987	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	647V_URINARY_TRACT	1	1	0.1357	FALSE	462	80	0	856	0	FALSE	ACH-000896
647V_URINARY_TRACT	MT-TA--MT-TC	3	6	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0.074	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	647V_URINARY_TRACT	1	1	0.111	FALSE	462	80	0	856	0	FALSE	ACH-000896
647V_URINARY_TRACT	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0494	0.0123	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	647V_URINARY_TRACT	0.83	1	0.0617	FALSE	292	1546	117	613	0	FALSE	ACH-000896
647V_URINARY_TRACT	XXbac-BPG252P9.9--IFI27	4	0	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0494	0	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	647V_URINARY_TRACT	1	1	0.0494	TRUE	0	2	0	13	2	TRUE	ACH-000896
647V_URINARY_TRACT	CHCHD6--ALDH1L1-AS2	1	10	CHCHD6	5595	chr3:126499273:+	ALDH1L1-AS2	21398	chr3:125927169:+	ONLY_REF_SPLICE	YES	132	0	0.08	1	0.0123	0.1234	CHCHD6->chr3:126423063-126679249:+,coiled-coil-helix-coiled-coil-helix_domain_containing_6,ALDH1L1-AS2->ALDH1L1_antisense_RNA_2,chr3:125898908-125929012:+	647V_URINARY_TRACT	0.08	1	0.1357	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	NRIP1--AF127936.7	3	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.037	0.0247	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	647V_URINARY_TRACT	0.56	1	0.0617	FALSE	125	705	46	456	0	FALSE	ACH-000896
647V_URINARY_TRACT	PCSK6--RP11-505E24.2	3	2	PCSK6	13496	chr15:101922297:-	RP11-505E24.2	39748	chr15:101605869:-	ONLY_REF_SPLICE	YES	11	0	0.31	1	0.037	0.0247	PCSK6->chr15:101840818-102065405:-,proprotein_convertase_subtilisin/kexin_type_6,RP11-505E24.2->chr15:101590937-101626271:-	647V_URINARY_TRACT	0.31	1	0.0617	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	RORA--ANXA2	3	2	RORA	13406	chr15:60885007:-	ANXA2	63129	chr15:60649435:-	ONLY_REF_SPLICE	YES	1	6964	0.83	0	0.037	0.0247	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[85401],RORA->RAR_related_orphan_receptor_A,chr15:60780483-61521518:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	647V_URINARY_TRACT	0	0.83	0.0617	FALSE	0	0	0	1	0	FALSE	ACH-000896
647V_URINARY_TRACT	F3--S100A6	3	0	F3	1208	chr1:95007149:-	S100A6	11335	chr1:153508450:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	647V_URINARY_TRACT	1	1	0.037	TRUE	0	0	0	3	0	TRUE	ACH-000896
647V_URINARY_TRACT	LGALS3BP--KRT18	3	0	LGALS3BP	4113	chr17:76972107:-	KRT18	11877	chr12:53342918:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,KRT18->chr12:53342655-53346685:+,keratin_18	647V_URINARY_TRACT	1	1	0.037	TRUE	0	0	0	9	0	TRUE	ACH-000896
647V_URINARY_TRACT	MT-TA--MT-TY	3	0	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	647V_URINARY_TRACT	1	1	0.037	FALSE	13	214	14	42	0	FALSE	ACH-000896
647V_URINARY_TRACT	MT-TA--MT-TY	3	0	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	647V_URINARY_TRACT	1	1	0.037	FALSE	13	214	14	42	0	FALSE	ACH-000896
647V_URINARY_TRACT	RP11-351I24.1--SBF2	3	0	RP11-351I24.1	1009	chr11:10325243:-	SBF2	31377	chr11:9879943:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	NEIGHBORS[8450],RP11-351I24.1->chr11:10324204-10325251:-,SBF2->SET_binding_factor_2,chr11:9800214-10315754:-	647V_URINARY_TRACT	1	1	0.037	FALSE	0	0	0	2	0	FALSE	ACH-000896
647V_URINARY_TRACT	TAPBP--MT-ND4L	3	0	TAPBP	4456	chr6:33273137:-	MT-ND4L	12323	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	TAPBP->TAP_binding_protein_(tapasin),chr6:33267471-33282164:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	647V_URINARY_TRACT	1	1	0.037	FALSE	0	0	0	3	0	FALSE	ACH-000896
647V_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0.0247	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	647V_URINARY_TRACT	1	1	0.0494	FALSE	467	2173	244	435	0	FALSE	ACH-000896
647V_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0247	0.0247	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	647V_URINARY_TRACT	0.8	1	0.0494	FALSE	515	4851	409	746	0	FALSE	ACH-000896
647V_URINARY_TRACT	PCSK6--RP11-505E24.2	2	1	PCSK6	13496	chr15:101922297:-	RP11-505E24.2	41052	chr15:101590984:-	ONLY_REF_SPLICE	YES	11	0	0.21	1	0.0247	0.0123	PCSK6->chr15:101840818-102065405:-,proprotein_convertase_subtilisin/kexin_type_6,RP11-505E24.2->chr15:101590937-101626271:-	647V_URINARY_TRACT	0.21	1	0.037	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	SLC27A5--MAST2	2	1	SLC27A5	9658	chr19:59010152:-	MAST2	25153	chr1:46425058:+	ONLY_REF_SPLICE	YES	23	47	0.12	0.06	0.0247	0.0123	SLC27A5->chr19:58990879-59023780:-,solute_carrier_family_27_member_5,MAST2->chr1:46252659-46501796:+,microtubule_associated_serine/threonine_kinase_2	647V_URINARY_TRACT	0.06	0.12	0.037	TRUE	0	0	0	1	0	FALSE	ACH-000896
647V_URINARY_TRACT	CDCA7L--TSPAN13	2	0	CDCA7L	1304	chr7:21985399:-	TSPAN13	18570	chr7:16815836:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	CDCA7L->cell_division_cycle_associated_7_like,chr7:21940518-21985702:-,TSPAN13->chr7:16793160-16824161:+,tetraspanin_13	647V_URINARY_TRACT	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	KRT7--SNHG15	2	0	KRT7	1272	chr12:52626575:+	SNHG15	20295	chr7:45023645:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	KRT7->chr12:52626304-52645970:+,keratin_7,SNHG15->chr7:45022622-45026560:-,small_nucleolar_RNA_host_gene_15	647V_URINARY_TRACT	1	1	0.0247	TRUE	0	0	0	1	0	TRUE	ACH-000896
647V_URINARY_TRACT	YWHAE--CRK	2	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0247	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	647V_URINARY_TRACT	1	1	0.0247	TRUE	6	50	7	115	0	FALSE	ACH-000896
647V_URINARY_TRACT	C15orf39--ADPGK	1	3	C15orf39	3572	chr15:75494400:+	ADPGK	24365	chr15:73045233:-	ONLY_REF_SPLICE	NO	85	205	0.04	0.02	0.0123	0.037	C15orf39->chr15:75487984-75504510:+,chromosome_15_open_reading_frame_39,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	647V_URINARY_TRACT	0.02	0.04	0.0493	TRUE	0	0	0	1	0	FALSE	ACH-000896
647V_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.8	1	0.0123	0.037	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	647V_URINARY_TRACT	0.8	1	0.0493	FALSE	407	2205	196	549	0	FALSE	ACH-000896
A1207_CENTRAL_NERVOUS_SYSTEM	EPG5--PSTPIP2	72	49	EPG5	12892	chr18:43514775:-	PSTPIP2	62344	chr18:43591253:-	ONLY_REF_SPLICE	YES	33	15	0.79	0.89	1.1563	0.7869	LOCAL_REARRANGEMENT:-:[16262],EPG5->Oncogene{Bushman},chr18:43427574-43547240:-,ectopic_P-granules_autophagy_protein_5_homolog_(C._elegans),PSTPIP2->chr18:43563502-43652238:-,proline-serine-threonine_phosphatase_interacting_protein_2	A1207_CENTRAL_NERVOUS_SYSTEM	0.79	0.89	1.9432	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	52	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8351	0.273	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	A1207_CENTRAL_NERVOUS_SYSTEM	0.99	1	1.1081	TRUE	508	994	45	981	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	ZNF106--RHOH	50	22	ZNF106	20484	chr15:42720216:-	RHOH	47837	chr4:40244334:+	ONLY_REF_SPLICE	YES	61	0	0.54	1	0.803	0.3533	ZNF106->chr15:42705021-42783321:-,zinc_finger_protein_106,RHOH->Oncogene{Bushman},chr4:40192673-40248587:+,ras_homolog_family_member_H	A1207_CENTRAL_NERVOUS_SYSTEM	0.54	1	1.1563	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	32	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	225	0	0.14	1	0.5139	0.0964	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	A1207_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.6103	TRUE	519	3926	326	965	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	CAPZB--GABPB2	18	21	CAPZB	1137	chr1:19811930:-	GABPB2	24145	chr1:151065668:+	ONLY_REF_SPLICE	YES	21	2	0.65	0.95	0.2891	0.3373	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,GABPB2->GA_binding_protein_transcription_factor_beta_subunit_2,chr1:151043054-151098018:+	A1207_CENTRAL_NERVOUS_SYSTEM	0.65	0.95	0.6264	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	22	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3533	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.3533	TRUE	0	0	0	518	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	CAPZB--GABPB2	20	4	CAPZB	1137	chr1:19811930:-	GABPB2	25340	chr1:151070328:+	ONLY_REF_SPLICE	YES	21	21	0.53	0.53	0.3212	0.0642	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,GABPB2->GA_binding_protein_transcription_factor_beta_subunit_2,chr1:151043054-151098018:+	A1207_CENTRAL_NERVOUS_SYSTEM	0.53	0.53	0.3854	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	CDYL--RP11-428J1.5	8	1	CDYL	6988	chr6:4777041:+	RP11-428J1.5	24686	chr6:5042740:+	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.1285	0.0161	NEIGHBORS[74421],CDYL->chr6:4706393-4955785:+,chromodomain_protein,_Y-like,RP11-428J1.5->chr6:5030206-5043683:+	A1207_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.1446	FALSE	0	0	0	1	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	8	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1285	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.1285	FALSE	183	104	9	328	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	6	4	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0964	0.0642	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	A1207_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.1606	TRUE	0	48	0	65	48	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	7	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1124	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.1124	TRUE	0	16	0	53	13	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	CAPZB--GABPB2	1	21	CAPZB	2383	chr1:19810684:-	GABPB2	24145	chr1:151065668:+	ONLY_REF_SPLICE	NO	45	2	0.33	0.92	0.0161	0.3373	CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-,GABPB2->GA_binding_protein_transcription_factor_beta_subunit_2,chr1:151043054-151098018:+	A1207_CENTRAL_NERVOUS_SYSTEM	0.33	0.92	0.3534	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	RP11-123O10.4--GRIP1	6	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0964	0.0161	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.1125	FALSE	416	2512	207	587	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	SERPINE1--MT-ND4	6	1	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	6170	11534	0	0	0.0964	0.0161	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	A1207_CENTRAL_NERVOUS_SYSTEM	0	0	0.1125	FALSE	1	0	0	29	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	6	0	AC104389.28	1084	chr11:5526799:-	HBE1	13754	chr11:5291382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0964	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0964	TRUE	0	16	0	53	13	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.92	0.92	0.0642	0.1124	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A1207_CENTRAL_NERVOUS_SYSTEM	0.92	0.92	0.1766	FALSE	467	2173	244	435	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	PODXL--MT-ND4L	5	2	PODXL	8405	chr7:131190729:-	MT-ND4L	16755	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1250	0	0.01	1	0.0803	0.0321	PODXL->chr7:131185021-131242976:-,podocalyxin_like,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A1207_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.1124	FALSE	0	0	0	5	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	RP11-444D3.1--SOX5	5	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.0803	0.0321	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	A1207_CENTRAL_NERVOUS_SYSTEM	0.88	1	0.1124	TRUE	477	1352	189	275	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	EPG5--PSTPIP2	1	17	EPG5	11734	chr18:43519566:-	PSTPIP2	62344	chr18:43591253:-	ONLY_REF_SPLICE	YES	49	15	0.27	0.55	0.0161	0.273	LOCAL_REARRANGEMENT:-:[16262],EPG5->Oncogene{Bushman},chr18:43427574-43547240:-,ectopic_P-granules_autophagy_protein_5_homolog_(C._elegans),PSTPIP2->chr18:43563502-43652238:-,proline-serine-threonine_phosphatase_interacting_protein_2	A1207_CENTRAL_NERVOUS_SYSTEM	0.27	0.55	0.2891	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	ANPEP--MT-ND4L	5	0	ANPEP	16060	chr15:90328379:-	MT-ND4L	19321	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0803	FALSE	0	1	0	16	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	NPM1P24--SET	5	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0803	TRUE	0	0	0	434	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0803	TRUE	22	156	2	142	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0803	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0803	TRUE	458	1351	185	561	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0321	0.1606	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A1207_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.1927	FALSE	407	2205	196	549	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	C11orf68--DRAP1	4	0	C11orf68	1087	chr11:65686502:-	DRAP1	6880	chr11:65687297:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0642	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0642	TRUE	0	1	0	6	1	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	C11orf68--DRAP1	4	0	C11orf68	1089	chr11:65686500:-	DRAP1	6319	chr11:65686736:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0642	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0642	TRUE	0	1	0	6	1	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	DHX40--VMP1	3	4	DHX40	11821	chr17:57665414:+	VMP1	38423	chr17:57915656:+	ONLY_REF_SPLICE	YES	139	738	0.05	0.01	0.0482	0.0642	NEIGHBORS[98847],DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	A1207_CENTRAL_NERVOUS_SYSTEM	0.01	0.05	0.1124	FALSE	0	0	0	2	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.9	0.9	0.0321	0.1124	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A1207_CENTRAL_NERVOUS_SYSTEM	0.9	0.9	0.1445	FALSE	515	4851	409	746	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0161	0.1767	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A1207_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.1928	FALSE	275	511	55	178	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0161	0.1606	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A1207_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.1767	FALSE	192	492	57	212	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	3	0	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0482	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0482	TRUE	0	11	0	26	8	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	C11orf68--DRAP1	3	0	C11orf68	1088	chr11:65686501:-	DRAP1	6884	chr11:65687301:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0482	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0482	TRUE	0	1	0	6	1	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0482	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0482	FALSE	183	104	9	328	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	CDH13--RP11-22H5.2	2	3	CDH13	7013	chr16:82753080:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	268	0	0.02	1	0.0321	0.0482	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	A1207_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0803	FALSE	1	1	0	8	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	CDH13--RP11-22H5.2	2	2	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	219	0	0.02	1	0.0321	0.0321	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	A1207_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0642	FALSE	14	31	0	36	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	CLTC--VMP1	2	2	CLTC	1316	chr17:57697534:+	VMP1	53132	chr17:57915656:+	ONLY_REF_SPLICE	YES	537	738	0.01	0.01	0.0321	0.0321	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	A1207_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0642	FALSE	0	6	0	10	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	APBB2--SLC30A9	2	0	APBB2	2423	chr4:41216422:-	SLC30A9	41515	chr4:42003633:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0321	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-,SLC30A9->chr4:41992489-42092474:+,solute_carrier_family_30_member_9	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0321	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	CALM2--CCDC132	2	0	CALM2	1161	chr2:47403580:-	CCDC132	29226	chr7:92921015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0321	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,CCDC132->chr7:92861653-92988338:+	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0321	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	HAT1--YWHAQ	2	0	HAT1	6391	chr2:172809519:+	YWHAQ	21921	chr2:9731644:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0321	0	HAT1->chr2:172778958-172848599:+,histone_acetyltransferase_1,YWHAQ->chr2:9724101-9771143:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_theta	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0321	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0321	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0321	FALSE	292	1546	117	613	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	PUM2--LAPTM4A	2	0	PUM2	2307	chr2:20550358:-	LAPTM4A	33499	chr2:20240772:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0321	0	PUM2->chr2:20448452-20551995:-,pumilio_RNA_binding_family_member_2,LAPTM4A->chr2:20232411-20251789:-,lysosomal_protein_transmembrane_4_alpha	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0321	TRUE	0	3	0	1	2	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	SNHG16--KANSL2	2	0	SNHG16	4633	chr17:74557480:+	KANSL2	19778	chr12:49055026:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0321	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,KANSL2->KAT8_regulatory_NSL_complex_subunit_2,chr12:49047184-49076021:-	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0321	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	TGM2--RSBN1L	2	0	TGM2	2360	chr20:36793591:-	RSBN1L	26387	chr7:77378741:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0321	0	TGM2->chr20:36756863-36794980:-,transglutaminase_2,RSBN1L->chr7:77325760-77412339:+,round_spermatid_basic_protein_1_like	A1207_CENTRAL_NERVOUS_SYSTEM	1	1	0.0321	TRUE	0	0	0	1	0	TRUE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	CDH13--RP11-22H5.2	1	3	CDH13	4686	chr16:82679937:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	NO	266	0	0.01	1	0.0161	0.0482	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	A1207_CENTRAL_NERVOUS_SYSTEM	0.01	1	0.0643	FALSE	0	0	0	1	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	FHOD3--KIAA1328	1	3	FHOD3	25400	chr18:34298678:+	KIAA1328	58582	chr18:34664088:+	ONLY_REF_SPLICE	YES	16	3	0.2	0.57	0.0161	0.0482	NEIGHBORS[49051],FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,KIAA1328->KIAA1328,chr18:34409069-34812135:+	A1207_CENTRAL_NERVOUS_SYSTEM	0.2	0.57	0.0643	FALSE	0	0	0	1	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	CLTC--VMP1	1	2	CLTC	4540	chr17:57725762:+	VMP1	53132	chr17:57915656:+	ONLY_REF_SPLICE	YES	298	738	0.01	0	0.0161	0.0321	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	A1207_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0482	FALSE	0	0	0	2	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	CLTC--VMP1	1	2	CLTC	24732	chr17:57760375:+	VMP1	53132	chr17:57915656:+	ONLY_REF_SPLICE	YES	960	738	0	0	0.0161	0.0321	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	A1207_CENTRAL_NERVOUS_SYSTEM	0	0	0.0482	FALSE	0	0	0	1	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	FHOD3--KIAA1328	1	2	FHOD3	25400	chr18:34298678:+	KIAA1328	59883	chr18:34740163:+	ONLY_REF_SPLICE	NO	16	3	0.16	0.5	0.0161	0.0321	NEIGHBORS[49051],FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,KIAA1328->KIAA1328,chr18:34409069-34812135:+	A1207_CENTRAL_NERVOUS_SYSTEM	0.16	0.5	0.0482	FALSE	0	0	0	1	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	USP10--COTL1	1	2	USP10	1134	chr16:84733717:+	COTL1	26655	chr16:84623868:-	ONLY_REF_SPLICE	YES	28	387	0.1	0.01	0.0161	0.0321	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	A1207_CENTRAL_NERVOUS_SYSTEM	0.01	0.1	0.0482	FALSE	0	0	0	5	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	CRIM1--FEZ2	1	1	CRIM1	18863	chr2:36749456:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	717	347	0	0.01	0.0161	0.0161	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	A1207_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0322	FALSE	2	2	0	15	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	FOSL1--SATB2	1	1	FOSL1	1333	chr11:65667712:-	SATB2	14678	chr2:200320819:-	ONLY_REF_SPLICE	NO	613	15	0	0.12	0.0161	0.0161	FOSL1->FOS_like_1,_AP-1_trancription_factor_subunit,Oncogene{Bushman},chr11:65659520-65668044:-,SATB2->SATB_homeobox_2,chr2:200134223-200335989:-	A1207_CENTRAL_NERVOUS_SYSTEM	0	0.12	0.0322	FALSE	0	0	0	1	0	FALSE	ACH-000283
A1207_CENTRAL_NERVOUS_SYSTEM	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	NO	4	269	0.33	0.01	0.0161	0.0161	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	A1207_CENTRAL_NERVOUS_SYSTEM	0.01	0.33	0.0322	FALSE	0	59	0	125	0	FALSE	ACH-000283
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--RUNX1T1	233	70	RUNX1	28357	chr21:36231771:-	RUNX1T1	55630	chr8:93029591:-	ONLY_REF_SPLICE	YES	96	0	0.76	1	2.6382	0.7926	Mitelman{Heart=2,Skin=11,ALL=2,AML=17},YOSHIHARA_TCGA_num_samples[LAML:7],chimerdb_omim:{acutemyelogenousleukemia},chimerdb_omim:{leukemia},chimerdb_pubmed{acute myeloid leukemia (AML), acute myelogenous leukemia,Promyelocytic leukemia (PML),acute myelocytic leukaemia,Acute myeloid leukaemia, M2 type, with dysplastic features and Auer rods, good prognosis,acute myeloid leukemia,acute myeloid leukemia, chronic myelogenous leukemia,Acute myeloid leukaemia (AML),acute myeloid leukemia with eosinophilia ,de novo cases of acute myeloid leukemia,acute myeloid leukemia(AML),Acute myeloid leukemia,pediatric acute myelogenous leukemia,Acute myelocytic leukemia(AML),AML(acute myeloid leukemia),leukemia,severalleukaemia,acute nonlymphoid leukemia,Primary granulocytic sarcoma (GS),core binding factor [CBF] leukemias,myeloid leukemia,childhood acute myeloid leukemia (AML),Acute myelogenous leukemia,myelodysplastic syndromes (MDS),acute myelocitic leukemia (AML),granulocytic sarcoma,acute myelogenous leukemia,Acute myeloid leukemia (AML),acute promyelocytic leukemia (APL),acute myeloid leukemia (AML) ,acute myeloid leukaemia(AML),acute promyelocytic leukemia(APL),acute myelogenous leukemia (AML),AML,nonHodgkin's lymphoma (NHL),acute myelogenous leukemia ,Acute leukemia,acute myelogenous leukemia with maturation (AMLM2),acute myeloblastic leukemia,acute myelogenous leukemia(AML), minimal residual diseases (MRD),acute myelogenous leukaemia,acute myeloblastic leukaemia,acute myelogenous leukemia(AML),spinal granulocytic sarcoma,Myelomastocytic leukemia,acute myeloid leukaemia (AML),acute myeloid leukaemia,acute leukemia},{Klijn_CCL:Lymphoid=1},RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,RUNX1T1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RUNX1_translocation_partner_1,chr8:92967203-93115514:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	3.4308	TRUE	0	7	0	2	7	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	108	36	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2229	0.4076	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.6305	TRUE	508	994	45	981	0	FALSE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	67	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	138	9	0.33	0.88	0.7586	0.0113	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.88	0.7699	TRUE	519	3926	326	965	0	FALSE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX1--RUNX1T1	12	71	RUNX1	28357	chr21:36231771:-	RUNX1T1	55562	chr8:93029659:-	ONLY_REF_SPLICE	YES	96	0	0.46	1	0.1359	0.8039	Mitelman{Heart=2,Skin=11,ALL=2,AML=17},YOSHIHARA_TCGA_num_samples[LAML:7],chimerdb_omim:{acutemyelogenousleukemia},chimerdb_omim:{leukemia},chimerdb_pubmed{acute myeloid leukemia (AML), acute myelogenous leukemia,Promyelocytic leukemia (PML),acute myelocytic leukaemia,Acute myeloid leukaemia, M2 type, with dysplastic features and Auer rods, good prognosis,acute myeloid leukemia,acute myeloid leukemia, chronic myelogenous leukemia,Acute myeloid leukaemia (AML),acute myeloid leukemia with eosinophilia ,de novo cases of acute myeloid leukemia,acute myeloid leukemia(AML),Acute myeloid leukemia,pediatric acute myelogenous leukemia,Acute myelocytic leukemia(AML),AML(acute myeloid leukemia),leukemia,severalleukaemia,acute nonlymphoid leukemia,Primary granulocytic sarcoma (GS),core binding factor [CBF] leukemias,myeloid leukemia,childhood acute myeloid leukemia (AML),Acute myelogenous leukemia,myelodysplastic syndromes (MDS),acute myelocitic leukemia (AML),granulocytic sarcoma,acute myelogenous leukemia,Acute myeloid leukemia (AML),acute promyelocytic leukemia (APL),acute myeloid leukemia (AML) ,acute myeloid leukaemia(AML),acute promyelocytic leukemia(APL),acute myelogenous leukemia (AML),AML,nonHodgkin's lymphoma (NHL),acute myelogenous leukemia ,Acute leukemia,acute myelogenous leukemia with maturation (AMLM2),acute myeloblastic leukemia,acute myelogenous leukemia(AML), minimal residual diseases (MRD),acute myelogenous leukaemia,acute myeloblastic leukaemia,acute myelogenous leukemia(AML),spinal granulocytic sarcoma,Myelomastocytic leukemia,acute myeloid leukaemia (AML),acute myeloid leukaemia,acute leukemia},{Klijn_CCL:Lymphoid=1},RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1,RUNX1T1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RUNX1_translocation_partner_1,chr8:92967203-93115514:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	1	0.9398	TRUE	0	7	0	2	7	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	16	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1812	0.0226	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2038	FALSE	462	80	0	856	0	FALSE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHP1--FAM189A1	14	6	CHP1	8348	chr15:41562816:+	FAM189A1	20075	chr15:29674035:-	ONLY_REF_SPLICE	YES	35	1	0.36	0.95	0.1585	0.0679	CHP1->calcineurin_like_EF-hand_protein_1,chr15:41523037-41574043:+,FAM189A1->chr15:29412457-29862927:-,family_with_sequence_similarity_189_member_A1	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.95	0.2264	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	8	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0906	0.0226	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1132	FALSE	416	2512	207	587	0	FALSE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	6	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0679	TRUE	0	0	0	100	0	FALSE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	6	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0679	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0679	TRUE	62	24	1	171	0	FALSE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0453	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0453	FALSE	292	1546	117	613	0	FALSE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--TBCA	3	0	RCC1	2175	chr1:28834672:+	TBCA	22542	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.034	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.034	TRUE	0	3	0	7	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--RP11-403I13.4	2	2	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.4	15135	chr1:149239868:+	ONLY_REF_SPLICE	YES	76	0	0.05	1	0.0226	0.0226	GTEx_FI:{Brain=[count:17=pct:2.6],Blood_Vessel=[count:10=pct:2.7],Ovary=[count:8=pct:15.1],Nerve=[count:6=pct:3.5],Esophagus=[count:6=pct:1.5],Colon=[count:6=pct:3.1],Breast=[count:4=pct:3.6],Adipose_Tissue=[count:3=pct:1.0],Whole_Blood=[count:3=pct:2.3],Pancreas=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Prostate=[count:2=pct:3.3],Pituitary=[count:2=pct:3.8],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Skin=[count:1=pct:0.3],Stomach=[count:1=pct:1.1],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.4->chr1:149239531-149265510:+	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0452	TRUE	61	154	6	19	0	FALSE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AAMP--MRPL47	2	0	AAMP	1876	chr2:219134105:-	MRPL47	11499	chr3:179319578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	AAMP->angio_associated_migratory_cell_protein,chr2:219128850-219134980:-,MRPL47->chr3:179306073-179322442:-,mitochondrial_ribosomal_protein_L47	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARID1B--WDR27	2	0	ARID1B	8327	chr6:157256710:+	WDR27	74120	chr6:169857729:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+,WDR27->WD_repeat_domain_27,chr6:169857307-170102159:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATRX--MED14	2	0	ATRX	35890	chrX:76812922:-	MED14	51878	chrX:40573962:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,MED14->chrX:40507558-40595110:-,mediator_complex_subunit_14	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRAF--SRPK2	2	0	BRAF	14964	chr7:140476712:-	SRPK2	41282	chr7:104844232:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	BRAF->ArcherDX_panel,B-Raf_proto-oncogene,_serine/threonine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:140419127-140624564:-,SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BTAF1--IDE	2	0	BTAF1	26785	chr10:93768032:+	IDE	63961	chr10:94235751:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},BTAF1->B-TFIID_TATA-box_binding_protein_associated_factor_1,chr10:93683526-93790082:+,IDE->chr10:94211441-94333833:-,insulin_degrading_enzyme	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BTBD7--OSTC	2	0	BTBD7	1273	chr14:93799166:-	OSTC	28720	chr4:109576720:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	BTBD7->BTB_domain_containing_7,chr14:93703896-93799438:-,OSTC->chr4:109571740-109588976:+,oligosaccharyltransferase_complex_subunit_(non-catalytic)	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C19orf25--FAM156A	2	0	C19orf25	1783	chr19:1478773:-	FAM156A	17703	chrX:52985544:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	C19orf25->chr19:1461142-1479555:-,chromosome_19_open_reading_frame_25,FAM156A->chrX:52976462-53024651:-,family_with_sequence_similarity_156_member_A	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMTM7--STT3B	2	0	CMTM7	2569	chr3:32483505:+	STT3B	19364	chr3:31656597:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+,STT3B->STT3B,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr3:31574130-31679112:+	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDB2--CKAP5	2	0	DDB2	3036	chr11:47238600:+	CKAP5	24726	chr11:46818490:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	DDB2->Oncogene{Bushman},chr11:47236493-47260767:+,damage_specific_DNA_binding_protein_2,CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FANCA--EDF1	2	0	FANCA	16080	chr16:89849267:-	EDF1	44865	chr9:139758323:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-,EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXO42--SFPQ	2	0	FBXO42	1200	chr1:16678750:-	SFPQ	33396	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	FBXO42->F-box_protein_42,chr1:16573334-16678949:-,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GAB2--NARS2	2	0	GAB2	1703	chr11:78128692:-	NARS2	31929	chr11:78204241:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[17613],GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GLTSCR2--DHX34	2	0	GLTSCR2	1262	chr19:48249040:+	DHX34	29491	chr19:47885237:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:2=pct:3.8],Breast=[count:2=pct:1.8],Cervix_Uteri=[count:1=pct:12.5],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=4;pct=0.05%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hippocampus=1,Whole_Blood=1,Spleen=1},GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	14	43	2	13	0	FALSE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRIPAP1--HP1BP3	2	0	GRIPAP1	18642	chrX:48832430:-	HP1BP3	30947	chr1:21100103:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GRIPAP1->GRIP1_associated_protein_1,chrX:48830134-48858675:-,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LRRC8D--ZNF644	2	0	LRRC8D	4992	chr1:90309341:+	ZNF644	20044	chr1:91406866:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	LRRC8D->chr1:90286573-90402170:+,leucine-rich_repeat_containing_8_family_member_D,ZNF644->chr1:91380859-91487829:-,zinc_finger_protein_644	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED17--ATAD5	2	0	MED17	5500	chr11:93523959:+	ATAD5	33414	chr17:29183973:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MED17->chr11:93517393-93547861:+,mediator_complex_subunit_17,ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MS4A14--B3GALNT2	2	0	MS4A14	1135	chr11:60146137:+	B3GALNT2	24151	chr1:235629031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MS4A14->chr11:60146003-60185161:+,membrane_spanning_4-domains_A14,B3GALNT2->beta-1,3-N-acetylgalactosaminyltransferase_2,chr1:235613238-235667781:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTF2--FCAR	2	0	MTF2	1297	chr1:93545088:+	FCAR	23316	chr19:55396647:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2,FCAR->Fc_fragment_of_IgA_receptor,chr19:55385704-55401838:+	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NHLRC3--PTK2	2	0	NHLRC3	2406	chr13:39613848:+	PTK2	64374	chr8:141684503:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NHLRC3->NHL_repeat_containing_3,chr13:39612443-39624246:+,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NKTR--TMEM165	2	0	NKTR	15451	chr3:42674315:+	TMEM165	43088	chr4:56290705:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NKTR->chr3:42642106-42690227:+,natural_killer_cell_triggering_receptor,TMEM165->chr4:56262124-56319564:+,transmembrane_protein_165	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLSCR1--RASA2	2	0	PLSCR1	1398	chr3:146262254:-	RASA2	19055	chr3:141231005:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	PLSCR1->chr3:146232967-146262651:-,phospholipid_scramblase_1,RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PNISR--CCNL2	2	0	PNISR	5163	chr6:99860427:-	CCNL2	27468	chr1:1326245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-,CCNL2->chr1:1321091-1334708:-,cyclin_L2	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRAM1--CSNK1D	2	0	PRAM1	1548	chr19:8567449:-	CSNK1D	14432	chr17:80223672:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	PRAM1->PML-RARA_regulated_adaptor_molecule_1,chr19:8554940-8567996:-,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRA--DDRGK1	2	0	PTPRA	12273	chr20:2969120:+	DDRGK1	33485	chr20:3175999:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A,DDRGK1->DDRGK_domain_containing_1,chr20:3170996-3185331:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PXN-AS1--RNF10	2	0	PXN-AS1	1136	chr12:120639229:+	RNF10	24064	chr12:121004628:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	PXN-AS1->PXN_antisense_RNA_1,chr12:120639094-120650941:+,RNF10->chr12:120971283-121015397:+,ring_finger_protein_10	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL5--DR1	2	0	RPL5	2636	chr1:93299217:+	DR1	13560	chr1:93819465:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5,DR1->chr1:93811445-93835055:+,down-regulator_of_transcription_1	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL5--UBB	2	0	RPL5	1093	chr1:93297674:+	UBB	12686	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5,UBB->chr17:16284112-16286059:+,ubiquitin_B	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RUNX2--POLH	2	0	RUNX2	8095	chr6:45405788:+	POLH	24483	chr6:43550053:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RUNX2->Oncogene{Bushman},chr6:45295894-45632086:+,runt_related_transcription_factor_2,POLH->Oncogene{Bushman},chr6:43543887-43586701:+,polymerase_(DNA)_eta	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG8--NOM1	2	0	SNHG8	1429	chr4:119200292:+	NOM1	17438	chr7:156761781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,NOM1->chr7:156742417-156765876:+,nucleolar_protein_with_MIF4G_domain_1	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TJAP1--RRN3P1	2	0	TJAP1	9770	chr6:43471444:+	RRN3P1	17270	chr16:21830082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	TJAP1->chr6:43445261-43474294:+,tight_junction_associated_protein_1,RRN3P1->RRN3_homolog,_RNA_polymerase_I_transcription_factor_pseudogene_1,chr16:21807951-21831731:-	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSSK3--PPIEL	2	0	TSSK3	2919	chr1:32819142:+	PPIEL	14870	chr1:40007513:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	TSSK3->chr1:32817122-32829913:+,testis_specific_serine_kinase_3,PPIEL->chr1:39997510-40024379:-,peptidylprolyl_isomerase_E_like_pseudogene	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNRD2--NOL12	2	0	TXNRD2	13999	chr22:19882930:-	NOL12	48040	chr22:38147779:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	TXNRD2->chr22:19863040-19929341:-,thioredoxin_reductase_2,NOL12->chr22:38077680-38170137:+,nucleolar_protein_12	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE3C--EIF4A2	2	0	UBE3C	27669	chr7:157049738:+	EIF4A2	39378	chr3:186506914:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C,EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELF1--ITFG1	1	1	ELF1	1603	chr13:41634974:-	ITFG1	27529	chr16:47462809:-	ONLY_REF_SPLICE	YES	10	15	0.17	0.12	0.0113	0.0113	ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-,ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.17	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ELF1--ITFG1	1	1	ELF1	1603	chr13:41634974:-	ITFG1	31307	chr16:47409851:-	ONLY_REF_SPLICE	YES	10	19	0.17	0.1	0.0113	0.0113	ELF1->E74_like_ETS_transcription_factor_1,chr13:41506056-41635576:-,ITFG1->chr16:47188298-47498060:-,integrin_alpha_FG-GAP_repeat_containing_1	KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.17	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000263
CAPAN2_PANCREAS	PFDN2--B4GALT3	214	13	PFDN2	1160	chr1:161087742:-	B4GALT3	7711	chr1:161146369:-	ONLY_REF_SPLICE	YES	12	16	0.95	0.93	1.7939	0.109	LOCAL_REARRANGEMENT:-:[53199],PFDN2->chr1:161070346-161087901:-,prefoldin_subunit_2,B4GALT3->beta-1,4-galactosyltransferase_3,chr1:161141100-161147287:-	CAPAN2_PANCREAS	0.93	0.95	1.9029	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	TIMM23B--LINC00843	100	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8383	0.1509	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAPAN2_PANCREAS	1	1	0.9892	TRUE	508	994	45	981	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-TA--MT-TN	97	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8131	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAPAN2_PANCREAS	1	1	0.8131	FALSE	369	2501	205	193	0	FALSE	ACH-000107
CAPAN2_PANCREAS	UPK3B--PMS2P2	9	302	UPK3B	9229	chr7:76648314:+	PMS2P2	13966	chr7:74984929:-	INCL_NON_REF_SPLICE	YES	0	5	1	0.98	0.0754	2.5316	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P2->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_2,chr7:74880905-74988262:-	CAPAN2_PANCREAS	0.98	1	2.607	TRUE	0	2	0	1	2	TRUE	ACH-000107
CAPAN2_PANCREAS	MT-ND6--MT-TE	64	8	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5365	0.0671	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN2_PANCREAS	1	1	0.6036	FALSE	499	1288	110	792	0	FALSE	ACH-000107
CAPAN2_PANCREAS	TIMM23--RP11-464F9.1	59	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	130	5	0.32	0.92	0.4946	0.0084	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAPAN2_PANCREAS	0.32	0.92	0.503	TRUE	519	3926	326	965	0	FALSE	ACH-000107
CAPAN2_PANCREAS	SMARCC1--LCN2	49	0	SMARCC1	30620	chr3:47651556:-	LCN2	39245	chr9:130911762:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4108	0	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,LCN2->chr9:130911350-130915734:+,lipocalin_2	CAPAN2_PANCREAS	1	1	0.4108	TRUE	0	0	0	2	0	TRUE	ACH-000107
CAPAN2_PANCREAS	MT-TA--MT-TC	38	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3185	0.0251	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAPAN2_PANCREAS	1	1	0.3436	FALSE	462	80	0	856	0	FALSE	ACH-000107
CAPAN2_PANCREAS	UPK3B--PMS2P2	33	0	UPK3B	7014	chr7:76157169:+	PMS2P2	18745	chr7:74973330:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2766	0	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P2->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_2,chr7:74880905-74988262:-	CAPAN2_PANCREAS	1	1	0.2766	TRUE	1	8	0	1	8	TRUE	ACH-000107
CAPAN2_PANCREAS	MT-ND6--MT-TE	25	9	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2096	0.0754	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN2_PANCREAS	1	1	0.285	FALSE	499	1288	110	792	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-TA--MT-TN	8	76	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0.6371	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAPAN2_PANCREAS	1	1	0.7042	FALSE	369	2501	205	193	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-ND6--MT-TE	21	20	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.176	0.1677	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN2_PANCREAS	0.98	1	0.3437	FALSE	499	1288	110	792	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-TA--MT-TN	17	30	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1425	0.2515	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAPAN2_PANCREAS	1	1	0.394	FALSE	369	2501	205	193	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-ATP6--MT-CO2	23	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	42	4	0.4	0.88	0.1928	0.0419	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAPAN2_PANCREAS	0.4	0.88	0.2347	FALSE	59	21	0	114	0	FALSE	ACH-000107
CAPAN2_PANCREAS	UPK3B--PMS2P2	22	2	UPK3B	2455	chr7:76141199:+	PMS2P2	13966	chr7:74984929:-	ONLY_REF_SPLICE	YES	339	5	0.07	0.83	0.1844	0.0168	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P2->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_2,chr7:74880905-74988262:-	CAPAN2_PANCREAS	0.07	0.83	0.2012	TRUE	1	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	RP11-96H19.1--RP11-446N19.1	19	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	0	0.85	1	0.1593	0.0251	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAPAN2_PANCREAS	0.85	1	0.1844	FALSE	515	4851	409	746	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-ATP6--MT-CO2	18	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	42	4	0.35	0.85	0.1509	0.0419	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAPAN2_PANCREAS	0.35	0.85	0.1928	FALSE	59	21	0	114	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-TA--MT-TN	7	47	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0.394	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAPAN2_PANCREAS	1	1	0.4527	FALSE	369	2501	205	193	0	FALSE	ACH-000107
CAPAN2_PANCREAS	HSP90AB1--MT-RNR2	17	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1425	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAPAN2_PANCREAS	1	1	0.1425	FALSE	13	9	0	364	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-ATP6--MT-CO2	16	4	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	95	7	0.17	0.74	0.1341	0.0335	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAPAN2_PANCREAS	0.17	0.74	0.1676	FALSE	59	21	0	114	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-TA--MT-TN	7	39	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0.3269	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAPAN2_PANCREAS	1	1	0.3856	FALSE	369	2501	205	193	0	FALSE	ACH-000107
CAPAN2_PANCREAS	CELF1--RP11-574M7.1	15	5	CELF1	1296	chr11:47586826:-	RP11-574M7.1	39622	chr11:50320146:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1257	0.0419	CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,RP11-574M7.1->chr11:50266852-50320877:+	CAPAN2_PANCREAS	0.95	1	0.1676	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	MT-ND6--MT-TE	7	34	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0587	0.285	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN2_PANCREAS	0.98	1	0.3437	FALSE	499	1288	110	792	0	FALSE	ACH-000107
CAPAN2_PANCREAS	RP11-471M2.3--MIR4500HG	14	1	RP11-471M2.3	1749	chr13:88462739:-	MIR4500HG	11306	chr13:88268010:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1174	0.0084	RP11-471M2.3->chr13:88459889-88463487:-,MIR4500HG->MIR4500_host_gene,chr13:88079469-88323514:-	CAPAN2_PANCREAS	0.94	1	0.1258	TRUE	0	1	0	1	1	TRUE	ACH-000107
CAPAN2_PANCREAS	APP--MT-CO3	12	6	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	1312	8728	0.01	0	0.1006	0.0503	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CAPAN2_PANCREAS	0	0.01	0.1509	FALSE	0	0	0	26	0	FALSE	ACH-000107
CAPAN2_PANCREAS	UPK3B--PMS2P2	13	2	UPK3B	2455	chr7:76141199:+	PMS2P2	13971	chr7:74984924:-	INCL_NON_REF_SPLICE	YES	339	5	0.04	0.75	0.109	0.0168	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P2->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_2,chr7:74880905-74988262:-	CAPAN2_PANCREAS	0.04	0.75	0.1258	TRUE	1	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	MT-TA--MT-TN	13	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.109	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAPAN2_PANCREAS	1	1	0.109	FALSE	369	2501	205	193	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-ND6--MT-TE	3	33	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0251	0.2766	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN2_PANCREAS	0.97	1	0.3017	FALSE	499	1288	110	792	0	FALSE	ACH-000107
CAPAN2_PANCREAS	HSP90AB1--MT-RNR2	11	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0922	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAPAN2_PANCREAS	1	1	0.0922	FALSE	13	9	0	364	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-TA--MT-TN	8	12	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0.1006	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAPAN2_PANCREAS	1	1	0.1677	FALSE	369	2501	205	193	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-ND6--MT-TE	3	30	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0.2515	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN2_PANCREAS	1	1	0.2766	FALSE	499	1288	110	792	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-ND6--MT-TE	5	20	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0419	0.1677	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN2_PANCREAS	0.93	1	0.2096	FALSE	499	1288	110	792	0	FALSE	ACH-000107
CAPAN2_PANCREAS	CELF1--RP11-574M7.1	8	5	CELF1	1296	chr11:47586826:-	RP11-574M7.1	39619	chr11:50320143:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0671	0.0419	CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,RP11-574M7.1->chr11:50266852-50320877:+	CAPAN2_PANCREAS	0.93	1	0.109	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	CTD-2337A12.1--CAST	9	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	109	1	0.08	0.0754	0.0084	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	CAPAN2_PANCREAS	0.08	1	0.0838	TRUE	347	1186	183	220	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-TA--MT-TN	9	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0754	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAPAN2_PANCREAS	1	1	0.0754	FALSE	369	2501	205	193	0	FALSE	ACH-000107
CAPAN2_PANCREAS	AL139819.1--MT-ATP6	8	1	AL139819.1	2074	chr10:102122470:+	MT-ATP6	6381	chrM:8927:+	INCL_NON_REF_SPLICE	YES	2041	7630	0	0	0.0671	0.0084	AL139819.1->chr10:102121397-102123376:+,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN2_PANCREAS	0	0	0.0755	FALSE	0	0	0	3	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-TA--MT-TN	8	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0.0084	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAPAN2_PANCREAS	1	1	0.0755	FALSE	369	2501	205	193	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-TA--MT-TC	7	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0.0168	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAPAN2_PANCREAS	1	1	0.0755	FALSE	462	80	0	856	0	FALSE	ACH-000107
CAPAN2_PANCREAS	AL139819.1--MT-ATP6	7	1	AL139819.1	2068	chr10:102122464:+	MT-ATP6	6045	chrM:8591:+	INCL_NON_REF_SPLICE	NO	2053	1	0	0.89	0.0587	0.0084	AL139819.1->chr10:102121397-102123376:+,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CAPAN2_PANCREAS	0	0.89	0.0671	FALSE	0	0	0	3	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-TA--MT-TC	7	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0.0084	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAPAN2_PANCREAS	1	1	0.0671	FALSE	462	80	0	856	0	FALSE	ACH-000107
CAPAN2_PANCREAS	RP11-120D5.1--MID1	7	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	16	1	0.33	0.0587	0.0084	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CAPAN2_PANCREAS	0.33	1	0.0671	FALSE	16	356	14	466	0	FALSE	ACH-000107
CAPAN2_PANCREAS	B3GNT3--FCHO1	7	0	B3GNT3	1379	chr19:17906015:+	FCHO1	31513	chr19:17897383:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0587	0	LOCAL_REARRANGEMENT:+:[6260],B3GNT3->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_3,chr19:17905637-17923891:+,FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+	CAPAN2_PANCREAS	1	1	0.0587	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN2_PANCREAS	1	1	0.0587	FALSE	499	1288	110	792	0	FALSE	ACH-000107
CAPAN2_PANCREAS	REV3L--RPL28	7	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CAPAN2_PANCREAS	1	1	0.0587	TRUE	22	156	2	142	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-ATP6--MT-CO2	6	2	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	20	4	0.29	0.67	0.0503	0.0168	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAPAN2_PANCREAS	0.29	0.67	0.0671	FALSE	59	21	0	114	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-ATP6--MT-CO2	4	7	MT-ATP6	1555	chrM:9081:+	MT-CO2	4955	chrM:7859:+	INCL_NON_REF_SPLICE	YES	4	9	0.73	0.55	0.0335	0.0587	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAPAN2_PANCREAS	0.55	0.73	0.0922	FALSE	59	21	0	114	0	FALSE	ACH-000107
CAPAN2_PANCREAS	PFDN2--B4GALT3	4	7	PFDN2	1160	chr1:161087742:-	B4GALT3	7782	chr1:161146298:-	ONLY_REF_SPLICE	YES	12	102	0.48	0.1	0.0335	0.0587	LOCAL_REARRANGEMENT:-:[53199],PFDN2->chr1:161070346-161087901:-,prefoldin_subunit_2,B4GALT3->beta-1,4-galactosyltransferase_3,chr1:161141100-161147287:-	CAPAN2_PANCREAS	0.1	0.48	0.0922	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	KLK6--PTMA	5	2	KLK6	7099	chr19:51462364:-	PTMA	12230	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	3651	4	0	0.64	0.0419	0.0168	KLK6->Oncogene{Bushman},chr19:51461887-51472929:-,kallikrein_related_peptidase_6,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CAPAN2_PANCREAS	0	0.64	0.0587	FALSE	0	0	0	2	0	FALSE	ACH-000107
CAPAN2_PANCREAS	LGALS3BP--KRT18	5	2	LGALS3BP	4113	chr17:76972107:-	KRT18	11877	chr12:53342918:+	INCL_NON_REF_SPLICE	YES	1083	2	0.01	0.78	0.0419	0.0168	LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,KRT18->chr12:53342655-53346685:+,keratin_18	CAPAN2_PANCREAS	0.01	0.78	0.0587	FALSE	0	0	0	9	0	FALSE	ACH-000107
CAPAN2_PANCREAS	UPK3B--PMS2P2	3	10	UPK3B	5781	chr7:76144726:+	PMS2P2	17656	chr7:74978010:-	INCL_NON_REF_SPLICE	YES	41	0	0.24	1	0.0251	0.0838	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P2->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_2,chr7:74880905-74988262:-	CAPAN2_PANCREAS	0.24	1	0.1089	TRUE	0	8	0	1	8	TRUE	ACH-000107
CAPAN2_PANCREAS	CTC-518B2.12--PTMA	5	1	CTC-518B2.12	1351	chr19:51517980:+	PTMA	8793	chr2:232576065:+	INCL_NON_REF_SPLICE	NO	0	3135	1	0	0.0419	0.0084	CTC-518B2.12->chr19:51517630-51517990:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CAPAN2_PANCREAS	0	1	0.0503	FALSE	0	0	0	1	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN2_PANCREAS	1	1	0.0419	FALSE	499	1288	110	792	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-TA--MT-TN	5	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAPAN2_PANCREAS	1	1	0.0419	FALSE	369	2501	205	193	0	FALSE	ACH-000107
CAPAN2_PANCREAS	UPK3B--PMS2P2	5	0	UPK3B	4448	chr7:76143393:+	PMS2P2	17656	chr7:74978010:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0419	0	UPK3B->chr7:76139745-76648340:+,uroplakin_3B,PMS2P2->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_2,chr7:74880905-74988262:-	CAPAN2_PANCREAS	1	1	0.0419	TRUE	0	10	0	1	7	TRUE	ACH-000107
CAPAN2_PANCREAS	MT-ATP6--MT-CO2	4	3	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	39	4	0.15	0.64	0.0335	0.0251	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAPAN2_PANCREAS	0.15	0.64	0.0586	FALSE	59	21	0	114	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-TA--MT-TC	4	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0.0251	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAPAN2_PANCREAS	1	1	0.0586	FALSE	462	80	0	856	0	FALSE	ACH-000107
CAPAN2_PANCREAS	LGALS3BP--KRT18	4	2	LGALS3BP	4100	chr17:76972120:-	KRT18	11864	chr12:53342905:+	INCL_NON_REF_SPLICE	YES	1109	3	0.01	0.67	0.0335	0.0168	LGALS3BP->Oncogene{Bushman},chr17:76967320-76976191:-,lectin,_galactoside_binding_soluble_3_binding_protein,KRT18->chr12:53342655-53346685:+,keratin_18	CAPAN2_PANCREAS	0.01	0.67	0.0503	FALSE	0	0	0	9	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-ATP6--MT-CO2	4	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	21	4	0.22	0.6	0.0335	0.0168	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAPAN2_PANCREAS	0.22	0.6	0.0503	FALSE	59	21	0	114	0	FALSE	ACH-000107
CAPAN2_PANCREAS	CTC-518B2.12--PTMA	4	1	CTC-518B2.12	1351	chr19:51517980:+	PTMA	9347	chr2:232576619:+	INCL_NON_REF_SPLICE	NO	0	3094	1	0	0.0335	0.0084	CTC-518B2.12->chr19:51517630-51517990:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CAPAN2_PANCREAS	0	1	0.0419	FALSE	0	0	0	1	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-ND6--MT-TE	3	5	MT-ND6	1271	chrM:14403:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0251	0.0419	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN2_PANCREAS	0.8	1	0.067	FALSE	499	1288	110	792	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAPAN2_PANCREAS	1	1	0.0335	FALSE	369	2501	205	193	0	FALSE	ACH-000107
CAPAN2_PANCREAS	RP11-471M2.3--MIR4500HG	4	0	RP11-471M2.3	1749	chr13:88462739:-	MIR4500HG	13711	chr13:88237335:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0335	0	RP11-471M2.3->chr13:88459889-88463487:-,MIR4500HG->MIR4500_host_gene,chr13:88079469-88323514:-	CAPAN2_PANCREAS	1	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0251	0.0335	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAPAN2_PANCREAS	0.64	1	0.0586	FALSE	275	511	55	178	0	FALSE	ACH-000107
CAPAN2_PANCREAS	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0168	0.0503	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAPAN2_PANCREAS	0.89	1	0.0671	FALSE	467	2173	244	435	0	FALSE	ACH-000107
CAPAN2_PANCREAS	CTC-518B2.12--PTMA	3	1	CTC-518B2.12	1350	chr19:51517979:+	PTMA	9361	chr2:232576633:+	INCL_NON_REF_SPLICE	NO	0	2946	1	0	0.0251	0.0084	CTC-518B2.12->chr19:51517630-51517990:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CAPAN2_PANCREAS	0	1	0.0335	FALSE	0	0	0	1	0	FALSE	ACH-000107
CAPAN2_PANCREAS	CTC-518B2.12--PTMA	3	1	CTC-518B2.12	1355	chr19:51517984:+	PTMA	9366	chr2:232576638:+	INCL_NON_REF_SPLICE	NO	0	2848	1	0	0.0251	0.0084	CTC-518B2.12->chr19:51517630-51517990:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CAPAN2_PANCREAS	0	1	0.0335	FALSE	0	0	0	1	0	FALSE	ACH-000107
CAPAN2_PANCREAS	CTC-518B2.12--PTMA	3	0	CTC-518B2.12	1338	chr19:51517967:+	PTMA	9880	chr2:232577152:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	CTC-518B2.12->chr19:51517630-51517990:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CAPAN2_PANCREAS	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	MT-ATP6--MT-CO2	3	0	MT-ATP6	1072	chrM:8598:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CAPAN2_PANCREAS	1	1	0.0251	FALSE	59	21	0	114	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN2_PANCREAS	1	1	0.0251	FALSE	499	1288	110	792	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAPAN2_PANCREAS	1	1	0.0251	FALSE	499	1288	110	792	0	FALSE	ACH-000107
CAPAN2_PANCREAS	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CAPAN2_PANCREAS	1	1	0.0251	FALSE	369	2501	205	193	0	FALSE	ACH-000107
CAPAN2_PANCREAS	PFDN2--B4GALT3	2	3	PFDN2	1160	chr1:161087742:-	B4GALT3	8216	chr1:161145864:-	ONLY_REF_SPLICE	YES	12	153	0.29	0.03	0.0168	0.0251	LOCAL_REARRANGEMENT:-:[53199],PFDN2->chr1:161070346-161087901:-,prefoldin_subunit_2,B4GALT3->beta-1,4-galactosyltransferase_3,chr1:161141100-161147287:-	CAPAN2_PANCREAS	0.03	0.29	0.0419	TRUE	0	0	0	1	0	FALSE	ACH-000107
CAPAN2_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0084	0.0587	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAPAN2_PANCREAS	0.89	1	0.0671	FALSE	192	492	57	212	0	FALSE	ACH-000107
CAPAN2_PANCREAS	CD2AP--LRRC1	2	0	CD2AP	12794	chr6:47549801:+	LRRC1	29034	chr6:53706908:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	CD2AP->CD2-associated_protein,chr6:47445525-47594999:+,LRRC1->chr6:53659295-53788919:+,leucine_rich_repeat_containing_1	CAPAN2_PANCREAS	1	1	0.0168	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	R3HDM2--SRSF4	2	0	R3HDM2	8772	chr12:57691873:-	SRSF4	38143	chr1:29485998:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,SRSF4->chr1:29474255-29508499:-,serine/arginine-rich_splicing_factor_4	CAPAN2_PANCREAS	1	1	0.0168	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	ZDHHC2--MTUS1	2	0	ZDHHC2	1825	chr8:17014362:+	MTUS1	45316	chr8:17542051:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0168	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},ZDHHC2->chr8:17013538-17082308:+,zinc_finger_DHHC-type_containing_2,MTUS1->Oncogene{Bushman},chr8:17501304-17658426:-,microtubule_associated_tumor_suppressor_1	CAPAN2_PANCREAS	1	1	0.0168	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	CELF1--RP11-574M7.1	1	2	CELF1	1296	chr11:47586826:-	RP11-574M7.1	40186	chr11:50320710:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0084	0.0168	CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,RP11-574M7.1->chr11:50266852-50320877:+	CAPAN2_PANCREAS	0.75	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000107
CAPAN2_PANCREAS	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	0	7	1	0.22	0.0084	0.0084	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CAPAN2_PANCREAS	0.22	1	0.0168	FALSE	0	23	1	67	0	FALSE	ACH-000107
CAPAN2_PANCREAS	TNRC6B--GNAS	1	1	TNRC6B	6221	chr22:40574144:+	GNAS	63324	chr20:57470667:+	ONLY_REF_SPLICE	NO	7	609	0.22	0	0.0084	0.0084	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},TNRC6B->chr22:40440821-40731812:+,trinucleotide_repeat_containing_6B,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	CAPAN2_PANCREAS	0	0.22	0.0168	FALSE	0	0	0	1	0	FALSE	ACH-000107
T24_URINARY_TRACT	TIMM23B--LINC00843	76	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8842	0.2211	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	T24_URINARY_TRACT	0.99	1	1.1053	TRUE	508	994	45	981	0	FALSE	ACH-000018
T24_URINARY_TRACT	ACTG1--NPLOC4	65	36	ACTG1	3555	chr17:79479646:-	NPLOC4	21433	chr17:79567453:-	INCL_NON_REF_SPLICE	YES	64	162	0.61	0.38	0.7563	0.4189	LOCAL_REARRANGEMENT:-:[33040],ACTG1->actin_gamma_1,chr17:79476997-79490873:-,NPLOC4->NPL4_homolog,_ubiquitin_recognition_factor,chr17:79523913-79615495:-	T24_URINARY_TRACT	0.38	0.61	1.1752	TRUE	0	1	0	1	1	TRUE	ACH-000018
T24_URINARY_TRACT	TIMM23--RP11-464F9.1	43	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	179	2	0.2	0.96	0.5003	0.0349	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	T24_URINARY_TRACT	0.2	0.96	0.5352	TRUE	519	3926	326	965	0	FALSE	ACH-000018
T24_URINARY_TRACT	ZNF654--HMGB2	34	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3956	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	T24_URINARY_TRACT	1	1	0.3956	TRUE	0	0	0	518	0	FALSE	ACH-000018
T24_URINARY_TRACT	C15orf57--CBX3	12	17	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	60	39	0.33	0.43	0.1396	0.1978	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	T24_URINARY_TRACT	0.33	0.43	0.3374	TRUE	267	562	48	632	0	FALSE	ACH-000018
T24_URINARY_TRACT	PRR16--CTD-2334D19.1	10	10	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	144	0	0.12	1	0.1163	0.1163	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	T24_URINARY_TRACT	0.12	1	0.2326	FALSE	56	216	12	147	0	FALSE	ACH-000018
T24_URINARY_TRACT	C15orf57--CBX3	6	14	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	58	40	0.26	0.33	0.0698	0.1629	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	T24_URINARY_TRACT	0.26	0.33	0.2327	TRUE	267	562	48	632	0	FALSE	ACH-000018
T24_URINARY_TRACT	PLXNB2--MT2A	9	0	PLXNB2	4885	chr22:50728393:-	MT2A	23273	chr16:56642513:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1047	0	PLXNB2->chr22:50713408-50746056:-,plexin_B2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	T24_URINARY_TRACT	1	1	0.1047	TRUE	0	0	0	5	0	TRUE	ACH-000018
T24_URINARY_TRACT	TXNL4A--RP11-370A5.1	7	4	TXNL4A	6150	chr18:77746602:-	RP11-370A5.1	24066	chr18:20303712:-	ONLY_REF_SPLICE	YES	135	0	0.08	1	0.0814	0.0465	TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A,RP11-370A5.1->chr18:20303454-20487684:-	T24_URINARY_TRACT	0.08	1	0.1279	TRUE	0	0	0	1	0	TRUE	ACH-000018
T24_URINARY_TRACT	ZNF654--HMGB2	7	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0814	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	T24_URINARY_TRACT	1	1	0.0814	TRUE	0	0	0	518	0	FALSE	ACH-000018
T24_URINARY_TRACT	RPSAP52--HMGA2	6	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	27	312	0.23	0.03	0.0698	0.0233	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	T24_URINARY_TRACT	0.03	0.23	0.0931	FALSE	0	59	0	125	0	FALSE	ACH-000018
T24_URINARY_TRACT	PRR16--CTD-2334D19.1	3	13	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	32	0	0.33	1	0.0349	0.1513	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	T24_URINARY_TRACT	0.33	1	0.1862	FALSE	21	45	1	60	0	FALSE	ACH-000018
T24_URINARY_TRACT	KRT7--TUBA1C	6	0	KRT7	1809	chr12:52627112:+	TUBA1C	26832	chr12:49666110:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0698	0	KRT7->chr12:52626304-52645970:+,keratin_7,TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c	T24_URINARY_TRACT	1	1	0.0698	TRUE	0	0	0	4	0	TRUE	ACH-000018
T24_URINARY_TRACT	ZNF654--HMGB2	6	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0698	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	T24_URINARY_TRACT	1	1	0.0698	TRUE	0	0	0	518	0	FALSE	ACH-000018
T24_URINARY_TRACT	IGFBP4--NPM1	5	3	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	1303	2	0.01	0.8	0.0582	0.0349	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	T24_URINARY_TRACT	0.01	0.8	0.0931	FALSE	0	0	0	38	0	FALSE	ACH-000018
T24_URINARY_TRACT	IGFBP4--NPM1	5	2	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	1261	2	0.01	0.78	0.0582	0.0233	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	T24_URINARY_TRACT	0.01	0.78	0.0815	FALSE	0	0	0	38	0	FALSE	ACH-000018
T24_URINARY_TRACT	ADIRF-AS1--LGALS1	5	1	ADIRF-AS1	3782	chr10:88728287:-	LGALS1	10007	chr22:38071654:+	INCL_NON_REF_SPLICE	YES	14	0	0.3	1	0.0582	0.0116	ADIRF-AS1->ADIRF_antisense_RNA_1,chr10:88725102-88731068:-,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	T24_URINARY_TRACT	0.3	1	0.0698	TRUE	0	0	0	5	0	TRUE	ACH-000018
T24_URINARY_TRACT	BNIP2--ANXA2	5	1	BNIP2	1400	chr15:59981334:-	ANXA2	37731	chr15:60656722:-	ONLY_REF_SPLICE	YES	177	7304	0.03	0	0.0582	0.0116	BNIP2->BCL2/adenovirus_E1B_19kDa_interacting_protein_2,chr15:59951345-59981733:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	T24_URINARY_TRACT	0	0.03	0.0698	FALSE	0	2	0	6	0	FALSE	ACH-000018
T24_URINARY_TRACT	MYH9--PKM	5	1	MYH9	40291	chr22:36678629:-	PKM	55094	chr15:72501167:-	INCL_NON_REF_SPLICE	YES	1323	6418	0	0	0.0582	0.0116	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	T24_URINARY_TRACT	0	0	0.0698	FALSE	0	0	0	1	0	FALSE	ACH-000018
T24_URINARY_TRACT	PRR16--CTD-2334D19.1	2	10	PRR16	5763	chr5:119952887:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	151	0	0.07	1	0.0233	0.1163	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	T24_URINARY_TRACT	0.07	1	0.1396	FALSE	0	0	0	1	0	FALSE	ACH-000018
T24_URINARY_TRACT	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	4	1	0.6	0.0465	0.0233	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	T24_URINARY_TRACT	0.6	1	0.0698	TRUE	465	1949	224	605	0	FALSE	ACH-000018
T24_URINARY_TRACT	TXNL4A--RP11-370A5.1	4	1	TXNL4A	5001	chr18:77748240:-	RP11-370A5.1	24066	chr18:20303712:-	ONLY_REF_SPLICE	YES	110	0	0.04	1	0.0465	0.0116	TXNL4A->chr18:77732867-77793949:-,thioredoxin_like_4A,RP11-370A5.1->chr18:20303454-20487684:-	T24_URINARY_TRACT	0.04	1	0.0581	TRUE	0	0	0	1	0	TRUE	ACH-000018
T24_URINARY_TRACT	EEF2--MT2A	3	4	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	NO	1574	6	0	0.54	0.0349	0.0465	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	T24_URINARY_TRACT	0	0.54	0.0814	FALSE	1	0	0	19	0	FALSE	ACH-000018
T24_URINARY_TRACT	AC005540.3--LDHA	3	2	AC005540.3	2138	chr2:191745648:-	LDHA	5439	chr11:18416110:+	INCL_NON_REF_SPLICE	YES	2	6	0.71	0.45	0.0349	0.0233	AC005540.3->chr2:191745523-191746785:-,LDHA->chr11:18415935-18429972:+,lactate_dehydrogenase_A	T24_URINARY_TRACT	0.45	0.71	0.0582	TRUE	0	0	0	3	0	TRUE	ACH-000018
T24_URINARY_TRACT	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0349	0.0233	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	T24_URINARY_TRACT	0.83	1	0.0582	TRUE	458	1351	185	561	0	FALSE	ACH-000018
T24_URINARY_TRACT	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0349	0.0116	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	T24_URINARY_TRACT	0.8	1	0.0465	FALSE	292	1546	117	613	0	FALSE	ACH-000018
T24_URINARY_TRACT	EIF1--RPL5	3	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	T24_URINARY_TRACT	1	1	0.0349	TRUE	0	0	0	39	0	FALSE	ACH-000018
T24_URINARY_TRACT	POLE--ANKLE2	2	1	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	43	37	0.07	0.07	0.0233	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	T24_URINARY_TRACT	0.07	0.07	0.0349	TRUE	0	0	0	11	0	FALSE	ACH-000018
T24_URINARY_TRACT	ASXL1--TRPC4AP	2	0	ASXL1	6650	chr20:30956926:+	TRPC4AP	29037	chr20:33637797:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ASXL1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},additional_sex_combs_like_1,_transcriptional_regulator,chr20:30946155-31027122:+,TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein	T24_URINARY_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000018
T24_URINARY_TRACT	BRI3BP--UBC	2	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	T24_URINARY_TRACT	1	1	0.0233	TRUE	5	99	5	34	0	FALSE	ACH-000018
T24_URINARY_TRACT	DOT1L--AP3D1	2	0	DOT1L	1117	chr19:2164264:+	AP3D1	62439	chr19:2102267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_v2:{count=6;pct=0.07%;dist=Heart_-_Atrial_Appendage=2,Vagina=1,Brain_-_Hypothalamus=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Testis=1},NEIGHBORS_OVERLAP:+:-:[316],DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+,AP3D1->adaptor_related_protein_complex_3_delta_1_subunit,chr19:2100988-2164464:-	T24_URINARY_TRACT	1	1	0.0233	FALSE	0	0	0	1	0	FALSE	ACH-000018
T24_URINARY_TRACT	MB21D2--FGF12	2	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	T24_URINARY_TRACT	1	1	0.0233	FALSE	0	17	0	46	0	FALSE	ACH-000018
T24_URINARY_TRACT	USP10--COTL1	2	0	USP10	1134	chr16:84733717:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	T24_URINARY_TRACT	1	1	0.0233	TRUE	0	0	0	7	0	TRUE	ACH-000018
T24_URINARY_TRACT	ZEB1--GNAS	2	0	ZEB1	1798	chr10:31608221:+	GNAS	44891	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	T24_URINARY_TRACT	1	1	0.0233	TRUE	0	1	0	2	1	TRUE	ACH-000018
T24_URINARY_TRACT	KATNA1--PCMT1	1	1	KATNA1	1504	chr6:149969605:-	PCMT1	19997	chr6:150094274:+	ONLY_REF_SPLICE	YES	39	331	0.05	0.01	0.0116	0.0116	KATNA1->chr6:149916009-149970108:-,katanin_catalytic_subunit_A1,PCMT1->chr6:150070579-150132556:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase	T24_URINARY_TRACT	0.01	0.05	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000018
T24_URINARY_TRACT	MLTK--OLA1	1	1	MLTK	5626	chr2:174034620:+	OLA1	43542	chr2:175006728:-	ONLY_REF_SPLICE	NO	118	374	0.02	0.01	0.0116	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},MLTK->chr2:173940163-174132738:+,OLA1->Obg-like_ATPase_1,chr2:174937175-175113426:-	T24_URINARY_TRACT	0.01	0.02	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000018
T24_URINARY_TRACT	MTF2--DR1	1	1	MTF2	1297	chr1:93545088:+	DR1	22104	chr1:93819465:+	ONLY_REF_SPLICE	YES	59	291	0.03	0.01	0.0116	0.0116	MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2,DR1->chr1:93811445-93835055:+,down-regulator_of_transcription_1	T24_URINARY_TRACT	0.01	0.03	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000018
T24_URINARY_TRACT	SPOCK1--CTD-2410N18.5	1	1	SPOCK1	10138	chr5:136448124:-	CTD-2410N18.5	24925	chr5:133509713:-	ONLY_REF_SPLICE	YES	381	5	0.01	0.29	0.0116	0.0116	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Brain_-_Hippocampus=1},SPOCK1->chr5:136310987-136934068:-,sparc/osteonectin,_cwcv_and_kazal-like_domains_proteoglycan_(testican)_1,CTD-2410N18.5->chr5:133502861-133561762:-	T24_URINARY_TRACT	0.01	0.29	0.0232	FALSE	0	0	0	1	0	FALSE	ACH-000018
PC3_PROSTATE	MT-ND5--MT-CO2	185	11	MT-ND5	2667	chrM:14003:+	MT-CO2	5947	chrM:7720:+	INCL_NON_REF_SPLICE	YES	1979	7432	0.09	0.03	2.6043	0.1549	LOCAL_REARRANGEMENT:+:[4068],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PC3_PROSTATE	0.03	0.09	2.7592	FALSE	7	5	0	9	0	FALSE	ACH-000090
PC3_PROSTATE	SAMD8--ADK	164	44	SAMD8	2395	chr10:76871480:+	ADK	25355	chr10:76285014:+	ONLY_REF_SPLICE	YES	8	650	0.96	0.24	2.3087	0.6194	SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,ADK->adenosine_kinase,chr10:75910960-76469061:+	PC3_PROSTATE	0.24	0.96	2.9281	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TN	161	2	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.2665	0.0282	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC3_PROSTATE	1	1	2.2947	FALSE	369	2501	205	193	0	FALSE	ACH-000090
PC3_PROSTATE	KDM5B--RP11-547I7.2	137	71	KDM5B	22316	chr1:202714986:-	RP11-547I7.2	39233	chr1:190449475:+	ONLY_REF_SPLICE	YES	16	2	0.93	0.99	1.9286	0.9995	KDM5B->chr1:202696526-202778598:-,lysine_demethylase_5B,RP11-547I7.2->chr1:190447681-190449865:+	PC3_PROSTATE	0.93	0.99	2.9281	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	TIMM23B--LINC00843	118	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.6611	0.4505	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PC3_PROSTATE	0.99	1	2.1116	TRUE	508	994	45	981	0	FALSE	ACH-000090
PC3_PROSTATE	MIER2--PPFIA3	118	30	MIER2	2111	chr19:340514:-	PPFIA3	33009	chr19:49644677:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.6611	0.4223	MIER2->MIER_family_member_2,chr19:305575-344798:-,PPFIA3->PTPRF_interacting_protein_alpha_3,chr19:49622646-49654283:+	PC3_PROSTATE	1	1	2.0834	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	SAMD8--ADK	100	25	SAMD8	2395	chr10:76871480:+	ADK	28066	chr10:76349040:+	ONLY_REF_SPLICE	YES	8	801	0.94	0.13	1.4077	0.3519	SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,ADK->adenosine_kinase,chr10:75910960-76469061:+	PC3_PROSTATE	0.13	0.94	1.7596	TRUE	0	0	0	2	0	TRUE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TC	103	12	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.45	0.1689	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PC3_PROSTATE	1	1	1.6189	FALSE	462	80	0	856	0	FALSE	ACH-000090
PC3_PROSTATE	SAMD8--ADK	74	106	SAMD8	2451	chr10:76871536:+	ADK	25355	chr10:76285014:+	ONLY_REF_SPLICE	YES	39	650	0.82	0.22	1.0417	1.4922	SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,ADK->adenosine_kinase,chr10:75910960-76469061:+	PC3_PROSTATE	0.22	0.82	2.5339	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	SAMD8--ADK	64	57	SAMD8	2451	chr10:76871536:+	ADK	28066	chr10:76349040:+	ONLY_REF_SPLICE	YES	39	801	0.76	0.13	0.901	0.8024	SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,ADK->adenosine_kinase,chr10:75910960-76469061:+	PC3_PROSTATE	0.13	0.76	1.7034	TRUE	0	0	0	2	0	TRUE	ACH-000090
PC3_PROSTATE	TIMM23--RP11-464F9.1	75	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	164	14	0.32	0.84	1.0558	0.0141	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PC3_PROSTATE	0.32	0.84	1.0699	TRUE	519	3926	326	965	0	FALSE	ACH-000090
PC3_PROSTATE	NUMB--DPF3	67	1	NUMB	5521	chr14:73925199:-	DPF3	49092	chr14:73141076:-	ONLY_REF_SPLICE	YES	0	37	1	0.65	0.9432	0.0141	NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-,DPF3->chr14:73086004-73360809:-,double_PHD_fingers_3	PC3_PROSTATE	0.65	1	0.9573	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	MT-ND6--MT-TE	65	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.915	0.0845	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC3_PROSTATE	1	1	0.9995	FALSE	499	1288	110	792	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	3	233	MT-ND4	1545	chrM:11304:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2509	0	0.09	1	0.0422	3.28	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.09	1	3.3222	FALSE	344	827	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	5	225	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	120	3	0.66	0.99	0.0704	3.1674	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.66	0.99	3.2378	FALSE	344	827	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	5	225	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	NO	85	0	0.73	1	0.0704	3.1674	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.73	1	3.2378	FALSE	344	826	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	4	224	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	51	1	0.82	1	0.0563	3.1533	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.82	1	3.2096	FALSE	344	826	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	4	224	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	46	3	0.83	0.99	0.0563	3.1533	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.83	0.99	3.2096	FALSE	344	826	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	3	224	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	73	3	0.76	0.99	0.0422	3.1533	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.76	0.99	3.1955	FALSE	344	826	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	13	167	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	16	2	0.92	0.99	0.183	2.3509	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.92	0.99	2.5339	FALSE	344	821	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	5	193	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	19	2	0.91	0.99	0.0704	2.7169	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.91	0.99	2.7873	FALSE	344	826	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	CTNNA1--CTB-46B19.2	50	0	CTNNA1	5795	chr5:138089199:+	CTB-46B19.2	41052	chr5:138348339:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.7039	0	NEIGHBORS[77613],CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,CTB-46B19.2->chr5:138348336-138386892:+	PC3_PROSTATE	1	1	0.7039	FALSE	0	0	0	1	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-ATP8	44	13	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	5812	7	0.01	0.89	0.6194	0.183	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0.01	0.89	0.8024	FALSE	43	37	8	105	0	FALSE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TN	23	93	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3238	1.3092	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC3_PROSTATE	1	1	1.633	FALSE	369	2501	205	193	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	4	160	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	31	2	0.84	0.99	0.0563	2.2524	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.84	0.99	2.3087	FALSE	344	826	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	3	155	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	33	2	0.83	0.99	0.0422	2.182	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.83	0.99	2.2242	FALSE	344	826	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	3	146	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	278	2	0.35	0.99	0.0422	2.0553	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.35	0.99	2.0975	FALSE	344	827	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	PUS7--CTB-111H14.1	33	19	PUS7	1216	chr7:105162499:-	CTB-111H14.1	36078	chr7:106106382:-	ONLY_REF_SPLICE	YES	90	0	0.37	1	0.4646	0.2675	PUS7->chr7:105080108-105162714:-,pseudouridylate_synthase_7_(putative),CTB-111H14.1->chr7:106012697-106410653:-	PC3_PROSTATE	0.37	1	0.7321	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-ATP8	28	30	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5	1	0.92	0.98	0.3942	0.4223	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0.92	0.98	0.8165	FALSE	43	37	8	105	0	FALSE	ACH-000090
PC3_PROSTATE	CAMK2G--KIAA1279	30	12	CAMK2G	12239	chr10:75597226:-	KIAA1279	34714	chr10:70770656:+	ONLY_REF_SPLICE	YES	162	98	0.21	0.3	0.4223	0.1689	CAMK2G->calcium/calmodulin_dependent_protein_kinase_II_gamma,chr10:75572259-75634343:-,KIAA1279->chr10:70748487-70776738:+	PC3_PROSTATE	0.21	0.3	0.5912	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	3	119	MT-ND4	1144	chrM:10903:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	NO	42	2	0.74	0.98	0.0422	1.6752	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.74	0.98	1.7174	FALSE	344	826	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	PLOD2--IQCJ	28	19	PLOD2	2347	chr3:145878668:-	IQCJ	30890	chr3:158963632:+	ONLY_REF_SPLICE	YES	85	0	0.36	1	0.3942	0.2675	PLOD2->chr3:145787227-145881440:-,procollagen-lysine,2-oxoglutarate_5-dioxygenase_2,IQCJ->IQ_motif_containing_J,chr3:158680717-158984096:+	PC3_PROSTATE	0.36	1	0.6617	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TN	18	56	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2534	0.7883	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC3_PROSTATE	1	1	1.0417	FALSE	369	2501	205	193	0	FALSE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TN	25	24	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3519	0.3379	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC3_PROSTATE	1	1	0.6898	FALSE	369	2501	205	193	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND6--MT-TE	29	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4082	0.0985	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC3_PROSTATE	1	1	0.5067	FALSE	499	1288	110	792	0	FALSE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TN	3	107	MT-TA	1059	chrM:5597:-	MT-TN	4080	chrM:5719:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	1.5063	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC3_PROSTATE	1	1	1.5485	FALSE	369	2501	205	193	0	FALSE	ACH-000090
PC3_PROSTATE	SIL1--AC034243.1	27	9	SIL1	21983	chr5:138356860:-	AC034243.1	30812	chr5:138080451:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.3801	0.1267	SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,AC034243.1->chr5:138080123-138088998:-	PC3_PROSTATE	0.97	1	0.5068	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	20	31	MT-ND4	1447	chrM:11206:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1091	2	0.04	0.96	0.2815	0.4364	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.04	0.96	0.7179	FALSE	344	827	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	PLOD2--IQCJ	19	27	PLOD2	2439	chr3:145878576:-	IQCJ	30890	chr3:158963632:+	ONLY_REF_SPLICE	YES	105	0	0.3	1	0.2675	0.3801	PLOD2->chr3:145787227-145881440:-,procollagen-lysine,2-oxoglutarate_5-dioxygenase_2,IQCJ->IQ_motif_containing_J,chr3:158680717-158984096:+	PC3_PROSTATE	0.3	1	0.6476	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TN	16	33	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2252	0.4646	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC3_PROSTATE	1	1	0.6898	FALSE	369	2501	205	193	0	FALSE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TN	6	72	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	1.0136	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC3_PROSTATE	1	1	1.0981	FALSE	369	2501	205	193	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND6--MT-TE	18	23	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.2534	0.3238	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC3_PROSTATE	0.93	1	0.5772	FALSE	499	1288	110	792	0	FALSE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TN	23	2	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3238	0.0282	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC3_PROSTATE	1	1	0.352	FALSE	369	2501	205	193	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	14	31	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1445	2	0.03	0.96	0.1971	0.4364	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.03	0.96	0.6335	FALSE	344	827	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TN	7	57	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0985	0.8024	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC3_PROSTATE	1	1	0.9009	FALSE	369	2501	205	193	0	FALSE	ACH-000090
PC3_PROSTATE	NIPA2--POLA1	20	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2815	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	PC3_PROSTATE	1	1	0.2815	TRUE	46	1352	75	139	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	3	66	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	9	1	0.88	0.99	0.0422	0.9291	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.88	0.99	0.9713	FALSE	344	821	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TC	19	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2675	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PC3_PROSTATE	1	1	0.2675	FALSE	462	80	0	856	0	FALSE	ACH-000090
PC3_PROSTATE	PTEN--METTL18	16	11	PTEN	4898	chr10:89653866:+	METTL18	24118	chr1:169763038:-	ONLY_REF_SPLICE	YES	1	6	0.96	0.82	0.2252	0.1549	PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog,METTL18->chr1:169761670-169764107:-,methyltransferase_like_18	PC3_PROSTATE	0.82	0.96	0.3801	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TN	4	54	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0.7602	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC3_PROSTATE	1	1	0.8165	FALSE	369	2501	205	193	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	5	46	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	88	2	0.37	0.96	0.0704	0.6476	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.37	0.96	0.718	FALSE	344	826	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND6--MT-TE	8	34	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.1126	0.4786	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC3_PROSTATE	0.93	1	0.5912	FALSE	499	1288	110	792	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-ATP8	14	9	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8031	73	0	0.24	0.1971	0.1267	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0	0.24	0.3238	FALSE	43	37	8	105	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-ATP8	8	33	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.95	0.1126	0.4646	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0.95	1	0.5772	FALSE	43	37	8	105	0	FALSE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TN	16	1	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2252	0.0141	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC3_PROSTATE	1	1	0.2393	FALSE	369	2501	205	193	0	FALSE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TC	14	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1971	0.0985	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PC3_PROSTATE	1	1	0.2956	FALSE	462	80	0	856	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND3--MT-ATP8	15	1	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	180	1	0.08	0.94	0.2112	0.0141	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0.08	0.94	0.2253	FALSE	351	233	23	137	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-ATP8	6	37	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	0.5209	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	1	1	0.6054	FALSE	43	37	8	105	0	FALSE	ACH-000090
PC3_PROSTATE	PLEKHA6--ASAH2B	13	7	PLEKHA6	3218	chr1:204336927:-	ASAH2B	42918	chr10:52565853:+	ONLY_REF_SPLICE	YES	13	0	0.61	1	0.183	0.0985	PLEKHA6->chr1:204187979-204346793:-,pleckstrin_homology_domain_containing_A6,ASAH2B->N-acylsphingosine_amidohydrolase_(non-lysosomal_ceramidase)_2B,chr10:52499078-52576255:+	PC3_PROSTATE	0.61	1	0.2815	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	3	46	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	65	2	0.43	0.96	0.0422	0.6476	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.43	0.96	0.6898	FALSE	344	826	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	HECTD4--RPL6	14	1	HECTD4	1141	chr12:112819756:-	RPL6	88607	chr12:112843841:-	ONLY_REF_SPLICE	YES	0	2125	1	0.01	0.1971	0.0141	LOCAL_REARRANGEMENT:-:[23098],HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,RPL6->chr12:112842994-112856642:-,ribosomal_protein_L6	PC3_PROSTATE	0.01	1	0.2112	TRUE	0	1	0	1	1	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	7	28	MT-ND4	1195	chrM:10954:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	88	2	0.28	0.95	0.0985	0.3942	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.28	0.95	0.4927	FALSE	344	826	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND6--MT-TE	7	26	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0985	0.366	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC3_PROSTATE	1	1	0.4645	FALSE	499	1288	110	792	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-ATP8	8	18	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	5	598	0.84	0.04	0.1126	0.2534	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0.04	0.84	0.366	FALSE	43	37	8	105	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	5	29	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	119	2	0.22	0.94	0.0704	0.4082	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.22	0.94	0.4786	FALSE	344	826	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND6--MT-TE	4	33	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.0563	0.4646	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC3_PROSTATE	0.9	1	0.5209	FALSE	499	1288	110	792	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	4	32	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	11229	2	0	0.95	0.0563	0.4505	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0	0.95	0.5068	FALSE	344	827	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-ATP8	3	33	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.0422	0.4646	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0.97	1	0.5068	FALSE	43	37	8	105	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-ATP8	4	29	MT-ND5	2712	chrM:14048:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	14	2	0.7	0.94	0.0563	0.4082	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0.7	0.94	0.4645	FALSE	43	37	8	105	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	4	28	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	65	2	0.33	0.94	0.0563	0.3942	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.33	0.94	0.4505	FALSE	344	826	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	8	12	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	237	0	0.08	1	0.1126	0.1689	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.08	1	0.2815	FALSE	344	827	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-ATP8	5	23	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8	73	0.78	0.28	0.0704	0.3238	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0.28	0.78	0.3942	FALSE	43	37	8	105	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	3	29	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	115	2	0.22	0.94	0.0422	0.4082	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.22	0.94	0.4504	FALSE	344	826	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-ATP8	3	27	MT-ND5	2648	chrM:13984:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	2471	0	0.01	1	0.0422	0.3801	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0.01	1	0.4223	FALSE	43	37	8	105	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-ATP8	6	13	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	5051	1286	0	0.01	0.0845	0.183	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0	0.01	0.2675	FALSE	43	37	8	105	0	FALSE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TC	6	13	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	0.183	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PC3_PROSTATE	1	1	0.2675	FALSE	462	80	0	856	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND6--MT-TE	3	24	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.87	1	0.0422	0.3379	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC3_PROSTATE	0.87	1	0.3801	FALSE	499	1288	110	792	0	FALSE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TN	9	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1267	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC3_PROSTATE	1	1	0.1267	FALSE	369	2501	205	193	0	FALSE	ACH-000090
PC3_PROSTATE	TAGLN2--MT-ND5	9	0	TAGLN2	6046	chr1:159888579:-	MT-ND5	10456	chrM:13064:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1267	0	TAGLN2->chr1:159887897-159895522:-,transgelin_2,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	PC3_PROSTATE	1	1	0.1267	FALSE	0	0	0	9	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	4	18	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	4	2	0.85	0.92	0.0563	0.2534	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.85	0.92	0.3097	FALSE	344	821	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-ATP8	3	22	MT-ND5	2599	chrM:13935:+	MT-ATP8	5885	chrM:8438:+	INCL_NON_REF_SPLICE	YES	4119	1	0.01	0.96	0.0422	0.3097	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0.01	0.96	0.3519	FALSE	43	37	8	105	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-ATP8	5	14	MT-ND5	2303	chrM:13639:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4818	73	0	0.21	0.0704	0.1971	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0	0.21	0.2675	FALSE	43	37	8	105	0	FALSE	ACH-000090
PC3_PROSTATE	C15orf57--CBX3	7	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	26	34	0.32	0.26	0.0985	0.0704	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PC3_PROSTATE	0.26	0.32	0.1689	TRUE	267	562	48	632	0	FALSE	ACH-000090
PC3_PROSTATE	ERO1L--GNG2	8	1	ERO1L	1533	chr14:53162086:-	GNG2	36509	chr14:52417368:+	ONLY_REF_SPLICE	YES	328	28	0.03	0.24	0.1126	0.0141	ERO1L->chr14:53106634-53162618:-,GNG2->G_protein_subunit_gamma_2,chr14:52292913-52446060:+	PC3_PROSTATE	0.03	0.24	0.1267	TRUE	0	0	0	1	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-ATP8	4	17	MT-ND5	2599	chrM:13935:+	MT-ATP8	5925	chrM:8478:+	INCL_NON_REF_SPLICE	YES	4119	393	0.01	0.05	0.0563	0.2393	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0.01	0.05	0.2956	FALSE	43	37	8	105	0	FALSE	ACH-000090
PC3_PROSTATE	ZMIZ1--CTNNA3	7	5	ZMIZ1	10069	chr10:81037082:+	CTNNA3	52577	chr10:68040379:-	ONLY_REF_SPLICE	YES	36	0	0.25	1	0.0985	0.0704	GTEx&tcga_normals:1/3694=0.03%,ZMIZ1->Oncogene{Bushman},chr10:80828792-81076276:+,zinc_finger_MIZ-type_containing_1,CTNNA3->catenin_alpha_3,chr10:67672276-69455927:-	PC3_PROSTATE	0.25	1	0.1689	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TN	7	1	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0985	0.0141	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC3_PROSTATE	1	1	0.1126	FALSE	369	2501	205	193	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-CO2	5	8	MT-ND5	2347	chrM:13683:+	MT-CO2	5971	chrM:7744:+	INCL_NON_REF_SPLICE	YES	4864	11686	0	0	0.0704	0.1126	LOCAL_REARRANGEMENT:+:[4068],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	PC3_PROSTATE	0	0	0.183	FALSE	7	5	0	9	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND6--MT-TE	7	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0985	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC3_PROSTATE	1	1	0.0985	FALSE	499	1288	110	792	0	FALSE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TC	4	12	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0.1689	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PC3_PROSTATE	1	1	0.2252	FALSE	462	80	0	856	0	FALSE	ACH-000090
PC3_PROSTATE	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0985	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PC3_PROSTATE	1	1	0.0985	FALSE	292	1546	117	613	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-ATP8	3	15	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	4957	1	0	0.95	0.0422	0.2112	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0	0.95	0.2534	FALSE	43	37	8	105	0	FALSE	ACH-000090
PC3_PROSTATE	RP11-96H19.1--RP11-446N19.1	6	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.9	0.9	0.0845	0.0422	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PC3_PROSTATE	0.9	0.9	0.1267	FALSE	515	4851	409	746	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND6--MT-TE	4	10	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0563	0.1408	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC3_PROSTATE	0.88	1	0.1971	FALSE	499	1288	110	792	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND3--MT-ATP8	6	1	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	107	7	0.06	0.5	0.0845	0.0141	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0.06	0.5	0.0986	FALSE	351	233	23	137	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-ATP8	5	5	MT-ND5	1969	chrM:13305:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	7407	598	0	0.02	0.0704	0.0704	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0	0.02	0.1408	FALSE	43	37	8	105	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND5--MT-ATP8	4	9	MT-ND5	2216	chrM:13552:+	MT-ATP8	5961	chrM:8514:+	INCL_NON_REF_SPLICE	YES	5544	1996	0	0.01	0.0563	0.1267	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0	0.01	0.183	FALSE	43	37	8	105	0	FALSE	ACH-000090
PC3_PROSTATE	SAMD8--ADK	5	5	SAMD8	2362	chr10:76871447:+	ADK	28066	chr10:76349040:+	INCL_NON_REF_SPLICE	YES	1	801	0.91	0.01	0.0704	0.0704	SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,ADK->adenosine_kinase,chr10:75910960-76469061:+	PC3_PROSTATE	0.01	0.91	0.1408	TRUE	0	0	0	2	0	FALSE	ACH-000090
PC3_PROSTATE	SIL1--AC034243.1	4	9	SIL1	21987	chr5:138356856:-	AC034243.1	30812	chr5:138080451:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0563	0.1267	SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,AC034243.1->chr5:138080123-138088998:-	PC3_PROSTATE	0.93	1	0.183	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	6	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	1	1	0.0845	FALSE	344	821	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND6--MT-TE	6	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC3_PROSTATE	1	1	0.0845	FALSE	499	1288	110	792	0	FALSE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TN	6	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PC3_PROSTATE	1	1	0.0845	FALSE	369	2501	205	193	0	FALSE	ACH-000090
PC3_PROSTATE	TTC37--ARSK	6	0	TTC37	2304	chr5:94886285:-	ARSK	46699	chr5:94901702:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0845	0	LOCAL_INVERSION:-:+:[67],TTC37->chr5:94799599-94890711:-,tetratricopeptide_repeat_domain_37,ARSK->arylsulfatase_family_member_K,chr5:94890778-94940768:+	PC3_PROSTATE	1	1	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	RP11-123O10.4--GRIP1	5	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0704	0.0422	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PC3_PROSTATE	1	1	0.1126	FALSE	416	2512	207	587	0	FALSE	ACH-000090
PC3_PROSTATE	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0704	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PC3_PROSTATE	1	1	0.0704	TRUE	465	1949	224	605	0	FALSE	ACH-000090
PC3_PROSTATE	RP11-96H19.1--RP11-446N19.1	4	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0563	0.0563	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PC3_PROSTATE	0.89	1	0.1126	FALSE	407	2205	196	549	0	FALSE	ACH-000090
PC3_PROSTATE	MT-TA--MT-TC	3	7	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0422	0.0985	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PC3_PROSTATE	1	1	0.1407	FALSE	462	80	0	856	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	4	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	1	2	0.86	0.75	0.0563	0.0282	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	0.75	0.86	0.0845	FALSE	344	821	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND3--MT-ATP8	4	1	MT-ND3	1053	chrM:10111:+	MT-ATP8	4482	chrM:8501:+	INCL_NON_REF_SPLICE	NO	101	1689	0.05	0	0.0563	0.0141	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0	0.05	0.0704	FALSE	351	233	23	137	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND3--MT-ATP8	4	1	MT-ND3	1060	chrM:10118:+	MT-ATP8	4489	chrM:8508:+	INCL_NON_REF_SPLICE	YES	164	1835	0.03	0	0.0563	0.0141	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	0	0.03	0.0704	FALSE	351	233	23	137	0	FALSE	ACH-000090
PC3_PROSTATE	CCSER1--MMRN1	4	0	CCSER1	1297	chr4:91048982:+	MMRN1	41500	chr4:90815875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0563	0	CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1,MMRN1->chr4:90800683-90875780:+,multimerin_1	PC3_PROSTATE	1	1	0.0563	TRUE	0	3	0	5	3	TRUE	ACH-000090
PC3_PROSTATE	CHSY3--HSPA8P4	4	0	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	PC3_PROSTATE	1	1	0.0563	FALSE	89	26	1	44	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND3--MT-ATP8	4	0	MT-ND3	1071	chrM:10129:+	MT-ATP8	4502	chrM:8521:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PC3_PROSTATE	1	1	0.0563	FALSE	351	233	23	137	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND4--MT-ND4L	4	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PC3_PROSTATE	1	1	0.0563	FALSE	344	821	44	306	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC3_PROSTATE	1	1	0.0563	FALSE	499	1288	110	792	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC3_PROSTATE	1	1	0.0563	FALSE	499	1288	110	792	0	FALSE	ACH-000090
PC3_PROSTATE	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.4	0.0422	0.0141	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PC3_PROSTATE	0.4	1	0.0563	TRUE	458	1351	185	561	0	FALSE	ACH-000090
PC3_PROSTATE	CTNNA1--CTB-46B19.2	3	0	CTNNA1	5795	chr5:138089199:+	CTB-46B19.2	47471	chr5:138368583:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0422	0	NEIGHBORS[77613],CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,CTB-46B19.2->chr5:138348336-138386892:+	PC3_PROSTATE	1	1	0.0422	FALSE	0	0	0	1	0	FALSE	ACH-000090
PC3_PROSTATE	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PC3_PROSTATE	1	1	0.0422	FALSE	499	1288	110	792	0	FALSE	ACH-000090
PC3_PROSTATE	SAMD8--ADK	1	6	SAMD8	2395	chr10:76871480:+	ADK	30217	chr10:76429941:+	ONLY_REF_SPLICE	YES	8	768	0.47	0.01	0.0141	0.0845	SAMD8->chr10:76859344-76941881:+,sterile_alpha_motif_domain_containing_8,ADK->adenosine_kinase,chr10:75910960-76469061:+	PC3_PROSTATE	0.01	0.47	0.0986	FALSE	0	0	0	1	0	FALSE	ACH-000090
PC3_PROSTATE	IPO11--RANBP17	2	1	IPO11	37673	chr5:61887499:+	RANBP17	79130	chr5:170648762:+	ONLY_REF_SPLICE	YES	25	4	0.11	0.43	0.0282	0.0141	IPO11->chr5:61699799-61924409:+,importin_11,RANBP17->Oncogene{Bushman},RAN_binding_protein_17,chr5:170288874-170727019:+	PC3_PROSTATE	0.11	0.43	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	IPO11--RANBP17	1	5	IPO11	37673	chr5:61887499:+	RANBP17	72429	chr5:170610326:+	ONLY_REF_SPLICE	NO	25	1	0.19	0.86	0.0141	0.0704	IPO11->chr5:61699799-61924409:+,importin_11,RANBP17->Oncogene{Bushman},RAN_binding_protein_17,chr5:170288874-170727019:+	PC3_PROSTATE	0.19	0.86	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	IPO11--RANBP17	1	5	IPO11	37673	chr5:61887499:+	RANBP17	72302	chr5:170610199:+	ONLY_REF_SPLICE	NO	25	1	0.19	0.86	0.0141	0.0704	IPO11->chr5:61699799-61924409:+,importin_11,RANBP17->Oncogene{Bushman},RAN_binding_protein_17,chr5:170288874-170727019:+	PC3_PROSTATE	0.19	0.86	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	PLEKHA6--ASAH2B	1	5	PLEKHA6	2160	chr1:204340658:-	ASAH2B	42918	chr10:52565853:+	ONLY_REF_SPLICE	YES	10	0	0.38	1	0.0141	0.0704	PLEKHA6->chr1:204187979-204346793:-,pleckstrin_homology_domain_containing_A6,ASAH2B->N-acylsphingosine_amidohydrolase_(non-lysosomal_ceramidase)_2B,chr10:52499078-52576255:+	PC3_PROSTATE	0.38	1	0.0845	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	SH3TC2--IPO11	2	1	SH3TC2	24929	chr5:148386444:-	IPO11	49544	chr5:61778928:+	ONLY_REF_SPLICE	YES	18	17	0.14	0.15	0.0282	0.0141	{Klijn_CCL:Other=1},SH3TC2->SH3_domain_and_tetratricopeptide_repeats_2,chr5:148303202-148442726:-,IPO11->chr5:61699799-61924409:+,importin_11	PC3_PROSTATE	0.14	0.15	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	ATL1--CTD-2213F21.2	2	0	ATL1	5521	chr14:51054796:+	CTD-2213F21.2	27430	chr14:31914850:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	ATL1->atlastin_GTPase_1,chr14:50999227-51099786:+,CTD-2213F21.2->chr14:31889492-31922089:+	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	ATL1--CTD-2213F21.2	2	0	ATL1	5521	chr14:51054796:+	CTD-2213F21.2	26152	chr14:31908878:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	ATL1->atlastin_GTPase_1,chr14:50999227-51099786:+,CTD-2213F21.2->chr14:31889492-31922089:+	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	COA1--STK17A	2	0	COA1	1289	chr7:43769028:-	STK17A	27976	chr7:43635500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	NEIGHBORS_OVERLAP:-:+:[18330],COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,STK17A->chr7:43622357-43666385:+,serine/threonine_kinase_17a	PC3_PROSTATE	1	1	0.0282	FALSE	0	3	1	13	0	FALSE	ACH-000090
PC3_PROSTATE	DHCR24--ZMYM4	2	0	DHCR24	2757	chr1:55349291:-	ZMYM4	23846	chr1:35846860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-,ZMYM4->chr1:35734568-35887659:+,zinc_finger_MYM-type_containing_4	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	EPB41L2--MAPK9	2	0	EPB41L2	1168	chr6:131384295:-	MAPK9	43565	chr5:179707608:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	EPB41L2->chr6:131160487-131384462:-,erythrocyte_membrane_protein_band_4.1_like_2,MAPK9->Oncogene{Bushman},chr5:179660143-179719099:-,mitogen-activated_protein_kinase_9	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	FER--SLIT3	2	0	FER	20079	chr5:108295048:+	SLIT3	42920	chr5:168678463:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	FER->FER_tyrosine_kinase,chr5:108083523-108532542:+,SLIT3->chr5:168088745-168728133:-,slit_guidance_ligand_3	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	NDUFA1--F8	2	0	NDUFA1	2617	chrX:119007356:+	F8	26824	chrX:154134848:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	NDUFA1->NADH:ubiquinone_oxidoreductase_subunit_A1,chrX:119005450-119010625:+,F8->chrX:154064063-154255215:-,coagulation_factor_VIII	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	PPIP5K2--CHSY3	2	0	PPIP5K2	18250	chr5:102495032:+	CHSY3	54166	chr5:129519922:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	PPIP5K2->chr5:102455853-102548500:+,diphosphoinositol_pentakisphosphate_kinase_2,CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	RAD51B--COX16	2	0	RAD51B	11638	chr14:68353921:+	COX16	41309	chr14:70809446:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+,COX16->COX16_cytochrome_c_oxidase_assembly_homolog,chr14:70791798-70826448:-	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	RBL1--NPEPPS	2	0	RBL1	1223	chr20:35724176:-	NPEPPS	57742	chr17:45697103:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	RBL1->Oncogene{Bushman},chr20:35624752-35724398:-,chr20:35724188-35725581:+,retinoblastoma-like_1,NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	RNF10--RP1-317E23.3	2	0	RNF10	17704	chr12:121009094:+	RP1-317E23.3	26672	chr1:26144204:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	RNF10->chr12:120971283-121015397:+,ring_finger_protein_10,RP1-317E23.3->chr1:26143240-26146263:-	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	RP11-634B7.4--TRIM58	2	0	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	PC3_PROSTATE	1	1	0.0282	TRUE	158	633	76	73	0	FALSE	ACH-000090
PC3_PROSTATE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0141	0.0563	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PC3_PROSTATE	0.83	1	0.0704	FALSE	275	511	55	178	0	FALSE	ACH-000090
PC3_PROSTATE	ZBTB25--RHOJ	2	0	ZBTB25	5948	chr14:64957079:-	RHOJ	26940	chr14:63757596:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0282	0	ZBTB25->chr14:64915824-64971931:-,zinc_finger_and_BTB_domain_containing_25,RHOJ->chr14:63670832-63759937:+,ras_homolog_family_member_J	PC3_PROSTATE	1	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	NRIP1--AF127936.7	1	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	21	0	0.16	1	0.0141	0.0422	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PC3_PROSTATE	0.16	1	0.0563	FALSE	125	705	46	456	0	FALSE	ACH-000090
PC3_PROSTATE	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	1	0.8	0.8	0.0141	0.0422	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PC3_PROSTATE	0.8	0.8	0.0563	FALSE	467	2173	244	435	0	FALSE	ACH-000090
PC3_PROSTATE	C1orf170--MIB2	1	2	C1orf170	5380	chr1:911879:-	MIB2	10774	chr1:1551888:+	ONLY_REF_SPLICE	YES	1	39	0.75	0.07	0.0141	0.0282	C1orf170->chr1:910579-917497:-,MIB2->Oncogene{Bushman},chr1:1550795-1565990:+,mindbomb_E3_ubiquitin_protein_ligase_2	PC3_PROSTATE	0.07	0.75	0.0423	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	C14orf159--NUMB	1	1	C14orf159	1372	chr14:91527048:+	NUMB	43424	chr14:73876776:-	ONLY_REF_SPLICE	YES	1	1	0.67	0.67	0.0141	0.0141	C14orf159->chr14:91526677-91691976:+,chromosome_14_open_reading_frame_159,NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-	PC3_PROSTATE	0.67	0.67	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	EMC2--EIF3E	1	1	EMC2	14565	chr8:109491339:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	101	801	0.02	0	0.0141	0.0141	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	PC3_PROSTATE	0	0.02	0.0282	FALSE	0	0	0	2	0	FALSE	ACH-000090
PC3_PROSTATE	FAF1--AGBL4	1	1	FAF1	9453	chr1:51121114:-	AGBL4	31364	chr1:50317190:-	ONLY_REF_SPLICE	NO	17	0	0.11	1	0.0141	0.0141	{Klijn_CCL:Lung=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	PC3_PROSTATE	0.11	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	MIER2--PPFIA3	1	1	MIER2	2111	chr19:340514:-	PPFIA3	35850	chr19:49649200:+	ONLY_REF_SPLICE	NO	0	43	1	0.04	0.0141	0.0141	MIER2->MIER_family_member_2,chr19:305575-344798:-,PPFIA3->PTPRF_interacting_protein_alpha_3,chr19:49622646-49654283:+	PC3_PROSTATE	0.04	1	0.0282	TRUE	0	0	0	1	0	TRUE	ACH-000090
PC3_PROSTATE	UEVLD--COPB1	1	1	UEVLD	4932	chr11:18596894:-	COPB1	44623	chr11:14480233:-	ONLY_REF_SPLICE	YES	49	323	0.04	0.01	0.0141	0.0141	UEVLD->UEV_and_lactate/malate_dehyrogenase_domains,chr11:18551156-18610294:-,COPB1->chr11:14464986-14521573:-,coatomer_protein_complex_subunit_beta_1	PC3_PROSTATE	0.01	0.04	0.0282	FALSE	0	0	0	1	0	FALSE	ACH-000090
OE19_OESOPHAGUS	PHF12--GRB7	879	292	PHF12	2707	chr17:27277083:-	GRB7	28882	chr17:37898505:+	ONLY_REF_SPLICE	YES	83	2175	0.93	0.35	9.5013	3.1563	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7	OE19_OESOPHAGUS	0.35	0.93	12.6576	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	506	517	PHF12	2707	chr17:27277083:-	MYO18A	42710	chr17:27442858:-	ONLY_REF_SPLICE	YES	83	101	0.92	0.91	5.4694	5.5883	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.91	0.92	11.0577	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	DDX23--RP11-554L12.1	561	269	DDX23	4063	chr12:49239357:-	RP11-554L12.1	19349	chr12:39486484:-	ONLY_REF_SPLICE	YES	103	2	0.89	1	6.0639	2.9077	DDX23->DEAD-box_helicase_23,chr12:49223547-49246625:-,RP11-554L12.1->chr12:39481515-39486676:-	OE19_OESOPHAGUS	0.89	1	8.9716	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	336	530	PHF12	2707	chr17:27277083:-	MYO18A	42095	chr17:27443473:-	ONLY_REF_SPLICE	YES	83	86	0.91	0.91	3.6319	5.7289	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.91	0.91	9.3608	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	EIF1--JUP	269	88	EIF1	1185	chr17:39845321:+	JUP	11834	chr17:39928114:-	ONLY_REF_SPLICE	YES	3836	2702	0.09	0.12	2.9077	0.9512	NEIGHBORS_OVERLAP:+:-:[3783],EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,JUP->chr17:39775692-39943183:-,junction_plakoglobin	OE19_OESOPHAGUS	0.09	0.12	3.8589	FALSE	0	0	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	SREBF2--DBF4B	239	138	SREBF2	12729	chr22:42281015:+	DBF4B	39693	chr17:42818769:+	ONLY_REF_SPLICE	YES	181	17	0.68	0.96	2.5834	1.4917	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+	OE19_OESOPHAGUS	0.68	0.96	4.0751	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	HAP1--FKBP10	208	91	HAP1	4916	chr17:39884453:-	FKBP10	18035	chr17:39973310:+	ONLY_REF_SPLICE	YES	8	48	0.97	0.86	2.2483	0.9836	LOCAL_INVERSION:-:+:[78036],HAP1->chr17:39873994-39890896:-,huntingtin-associated_protein_1,FKBP10->FK506_binding_protein_10,chr17:39968932-39979465:+	OE19_OESOPHAGUS	0.86	0.97	3.2319	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	SREBF2--DBF4B	195	100	SREBF2	12729	chr22:42281015:+	DBF4B	40745	chr17:42824451:+	ONLY_REF_SPLICE	YES	181	19	0.62	0.94	2.1078	1.0809	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+	OE19_OESOPHAGUS	0.62	0.94	3.1887	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--GRB7	103	349	PHF12	2707	chr17:27277083:-	GRB7	25670	chr17:37894223:+	INCL_NON_REF_SPLICE	YES	83	0	0.84	1	1.1133	3.7724	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7	OE19_OESOPHAGUS	0.84	1	4.8857	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	13	530	PHF12	3104	chr17:27276686:-	MYO18A	42095	chr17:27443473:-	ONLY_REF_SPLICE	YES	55	86	0.91	0.86	0.1405	5.7289	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.86	0.91	5.8694	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	8	538	PHF12	4171	chr17:27271521:-	MYO18A	42095	chr17:27443473:-	ONLY_REF_SPLICE	YES	42	86	0.93	0.86	0.0865	5.8153	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.86	0.93	5.9018	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	8	530	PHF12	3108	chr17:27276682:-	MYO18A	42095	chr17:27443473:-	INCL_NON_REF_SPLICE	YES	55	86	0.91	0.86	0.0865	5.7289	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.86	0.91	5.8154	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	9	517	PHF12	3104	chr17:27276686:-	MYO18A	42710	chr17:27442858:-	ONLY_REF_SPLICE	YES	55	101	0.91	0.84	0.0973	5.5883	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.84	0.91	5.6856	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	2	524	PHF12	4171	chr17:27271521:-	MYO18A	42710	chr17:27442858:-	ONLY_REF_SPLICE	YES	42	101	0.93	0.84	0.0216	5.664	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.84	0.93	5.6856	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	MT-TA--MT-TC	111	18	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1998	0.1946	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE19_OESOPHAGUS	1	1	1.3944	FALSE	462	80	0	856	0	FALSE	ACH-000679
OE19_OESOPHAGUS	PHF12--GRB7	34	318	PHF12	2707	chr17:27277083:-	GRB7	25730	chr17:37894283:+	INCL_NON_REF_SPLICE	YES	83	9	0.81	0.98	0.3675	3.4373	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7	OE19_OESOPHAGUS	0.81	0.98	3.8048	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	96	45	PHF12	2707	chr17:27277083:-	MYO18A	44453	chr17:27441115:-	ONLY_REF_SPLICE	YES	83	351	0.63	0.29	1.0377	0.4864	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.29	0.63	1.5241	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--GRB7	23	294	PHF12	2707	chr17:27277083:-	GRB7	27818	chr17:37896371:+	INCL_NON_REF_SPLICE	YES	83	2420	0.79	0.12	0.2486	3.1779	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7	OE19_OESOPHAGUS	0.12	0.79	3.4265	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	ERBB2--EIF1	88	16	ERBB2	13316	chr17:37868300:+	EIF1	32067	chr17:39847034:+	ONLY_REF_SPLICE	YES	5081	5478	0.02	0.02	0.9512	0.1729	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1	OE19_OESOPHAGUS	0.02	0.02	1.1241	TRUE	0	0	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	PHF12--GRB7	9	294	PHF12	2707	chr17:27277083:-	GRB7	27814	chr17:37896367:+	INCL_NON_REF_SPLICE	YES	83	2421	0.78	0.11	0.0973	3.1779	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7	OE19_OESOPHAGUS	0.11	0.78	3.2752	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PHF12--GRB7	7	295	PHF12	2707	chr17:27277083:-	GRB7	27754	chr17:37896307:+	INCL_NON_REF_SPLICE	YES	83	2467	0.78	0.11	0.0757	3.1887	PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,GRB7->chr17:37894180-37903544:+,growth_factor_receptor_bound_protein_7	OE19_OESOPHAGUS	0.11	0.78	3.2644	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	MT-ND6--MT-TE	75	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.8107	0.0216	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE19_OESOPHAGUS	0.99	1	0.8323	FALSE	499	1288	110	792	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	8	225	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	29	1	0.89	1	0.0865	2.4321	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.89	1	2.5186	FALSE	344	826	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	5	233	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	35	0	0.87	1	0.054	2.5185	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.87	1	2.5725	FALSE	344	827	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	HAP1--FKBP10	33	116	HAP1	5355	chr17:39884014:-	FKBP10	18035	chr17:39973310:+	ONLY_REF_SPLICE	YES	7	48	0.96	0.76	0.3567	1.2539	LOCAL_INVERSION:-:+:[78036],HAP1->chr17:39873994-39890896:-,huntingtin-associated_protein_1,FKBP10->FK506_binding_protein_10,chr17:39968932-39979465:+	OE19_OESOPHAGUS	0.76	0.96	1.6106	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	4	224	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	17	1	0.93	1	0.0432	2.4213	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.93	1	2.4645	FALSE	344	826	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	3	228	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	NO	17	1	0.93	1	0.0324	2.4645	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.93	1	2.4969	FALSE	344	826	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	3	227	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	15	1	0.94	1	0.0324	2.4537	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.94	1	2.4861	FALSE	344	826	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	4	223	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	16	1	0.93	1	0.0432	2.4104	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.93	1	2.4536	FALSE	344	826	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	WDTC1--DYM	47	29	WDTC1	2583	chr1:27587593:+	DYM	43555	chr18:46812986:-	ONLY_REF_SPLICE	YES	35	21	0.68	0.78	0.508	0.3135	WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	OE19_OESOPHAGUS	0.68	0.78	0.8215	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	SREBF2--DBF4B	17	143	SREBF2	14026	chr22:42282312:+	DBF4B	39693	chr17:42818769:+	ONLY_REF_SPLICE	YES	195	17	0.45	0.9	0.1838	1.5457	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+	OE19_OESOPHAGUS	0.45	0.9	1.7295	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	11	160	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	9	1	0.95	0.99	0.1189	1.7295	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.95	0.99	1.8484	FALSE	344	821	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	3	188	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	9	1	0.95	0.99	0.0324	2.0321	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.95	0.99	2.0645	FALSE	344	826	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	5	163	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	15	0	0.92	1	0.054	1.7619	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.92	1	1.8159	FALSE	344	826	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	SREBF2--DBF4B	11	139	SREBF2	12729	chr22:42281015:+	DBF4B	39628	chr17:42818704:+	ONLY_REF_SPLICE	YES	181	13	0.45	0.92	0.1189	1.5025	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+	OE19_OESOPHAGUS	0.45	0.92	1.6214	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	ERBB2--JUP	40	16	ERBB2	16192	chr17:37872192:+	JUP	44508	chr17:39911684:-	ONLY_REF_SPLICE	YES	8154	5489	0.01	0.01	0.4324	0.1729	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Skin=[count:6=pct:1.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=12;pct=0.14%;dist=Skin_-_Sun_Exposed_(Lower_leg)=7,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Esophagus_-_Mucosa=2},ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,JUP->chr17:39775692-39943183:-,junction_plakoglobin	OE19_OESOPHAGUS	0.01	0.01	0.6053	TRUE	7	23	1	2	0	FALSE	ACH-000679
OE19_OESOPHAGUS	SREBF2--DBF4B	7	148	SREBF2	14026	chr22:42282312:+	DBF4B	39628	chr17:42818704:+	ONLY_REF_SPLICE	YES	195	13	0.44	0.92	0.0757	1.5998	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+	OE19_OESOPHAGUS	0.44	0.92	1.6755	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	3	157	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	35	0	0.82	1	0.0324	1.697	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.82	1	1.7294	FALSE	344	826	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	EIF1--JUP	18	91	EIF1	1185	chr17:39845321:+	JUP	10770	chr17:39929178:-	ONLY_REF_SPLICE	YES	3836	2666	0.03	0.04	0.1946	0.9836	NEIGHBORS_OVERLAP:+:-:[3783],EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,JUP->chr17:39775692-39943183:-,junction_plakoglobin	OE19_OESOPHAGUS	0.03	0.04	1.1782	FALSE	0	0	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	TIMM23B--LINC00843	34	8	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3675	0.0865	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OE19_OESOPHAGUS	1	1	0.454	TRUE	508	994	45	981	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND6--MT-TE	30	23	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.91	1	0.3243	0.2486	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE19_OESOPHAGUS	0.91	1	0.5729	FALSE	499	1288	110	792	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-TA--MT-TC	31	16	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3351	0.1729	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE19_OESOPHAGUS	1	1	0.508	FALSE	462	80	0	856	0	FALSE	ACH-000679
OE19_OESOPHAGUS	EIF1--JUP	13	87	EIF1	1185	chr17:39845321:+	JUP	11837	chr17:39928111:-	ONLY_REF_SPLICE	YES	3836	2671	0.03	0.04	0.1405	0.9404	NEIGHBORS_OVERLAP:+:-:[3783],EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,JUP->chr17:39775692-39943183:-,junction_plakoglobin	OE19_OESOPHAGUS	0.03	0.04	1.0809	FALSE	0	0	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	3	127	PHF12	2707	chr17:27277083:-	MYO18A	43109	chr17:27442459:-	ONLY_REF_SPLICE	YES	83	344	0.61	0.27	0.0324	1.3728	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.27	0.61	1.4052	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	OR51S1--TP53I11	32	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3459	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	OE19_OESOPHAGUS	1	1	0.3459	TRUE	402	216	10	229	0	FALSE	ACH-000679
OE19_OESOPHAGUS	WDTC1--DYM	25	28	WDTC1	2583	chr1:27587593:+	DYM	43558	chr18:46812983:-	ONLY_REF_SPLICE	YES	35	21	0.6	0.72	0.2702	0.3027	WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	OE19_OESOPHAGUS	0.6	0.72	0.5729	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	MT-ND6--MT-TE	31	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.3351	0.0324	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE19_OESOPHAGUS	0.97	1	0.3675	FALSE	499	1288	110	792	0	FALSE	ACH-000679
OE19_OESOPHAGUS	SREBF2--DBF4B	5	98	SREBF2	12709	chr22:42280995:+	DBF4B	39693	chr17:42818769:+	INCL_NON_REF_SPLICE	YES	160	17	0.39	0.86	0.054	1.0593	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+	OE19_OESOPHAGUS	0.39	0.86	1.1133	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	SREBF2--DBF4B	4	102	SREBF2	14026	chr22:42282312:+	DBF4B	40745	chr17:42824451:+	ONLY_REF_SPLICE	YES	195	19	0.35	0.85	0.0432	1.1025	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+	OE19_OESOPHAGUS	0.35	0.85	1.1457	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	PGAP3--NT5C3B	24	21	PGAP3	4973	chr17:37840850:-	NT5C3B	16102	chr17:39988729:-	ONLY_REF_SPLICE	YES	2620	263	0.02	0.15	0.2594	0.227	PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,NT5C3B->5'-nucleotidase,_cytosolic_IIIB,chr17:39981335-39992523:-	OE19_OESOPHAGUS	0.02	0.15	0.4864	TRUE	0	0	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	4	97	MT-ND4	1112	chrM:10871:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	15	0	0.87	1	0.0432	1.0485	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.87	1	1.0917	FALSE	344	826	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	3	77	MT-ND4	1039	chrM:10798:+	MT-ND4L	5496	chrM:10587:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0324	0.8323	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.98	1	0.8647	FALSE	344	821	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND6--MT-TE	14	32	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.9	1	0.1513	0.3459	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE19_OESOPHAGUS	0.9	1	0.4972	FALSE	499	1288	110	792	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	4	70	MT-ND4	1277	chrM:11036:+	MT-ND4L	5652	chrM:10743:+	INCL_NON_REF_SPLICE	YES	59	0	0.56	1	0.0432	0.7566	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.56	1	0.7998	FALSE	344	827	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	14	29	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	29	0	0.6	1	0.1513	0.3135	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.6	1	0.4648	FALSE	344	826	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	SREBF2--DBF4B	3	70	SREBF2	12709	chr22:42280995:+	DBF4B	40745	chr17:42824451:+	INCL_NON_REF_SPLICE	YES	160	19	0.31	0.79	0.0324	0.7566	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+	OE19_OESOPHAGUS	0.31	0.79	0.789	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	4	61	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	9	0	0.88	1	0.0432	0.6594	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.88	1	0.7026	FALSE	344	821	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	4	57	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	21	0	0.74	1	0.0432	0.6161	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.74	1	0.6593	FALSE	344	826	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	NPM1P24--SET	18	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1946	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OE19_OESOPHAGUS	1	1	0.1946	TRUE	0	0	0	434	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	8	39	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	383	0	0.11	1	0.0865	0.4216	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.11	1	0.5081	FALSE	344	827	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	3	58	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	70	0	0.47	1	0.0324	0.6269	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.47	1	0.6593	FALSE	344	827	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	3	58	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	60	0	0.5	1	0.0324	0.6269	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.5	1	0.6593	FALSE	344	827	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MED15--CCND2	15	6	MED15	3426	chr22:20862033:+	CCND2	29383	chr12:4383167:+	INCL_NON_REF_SPLICE	YES	60	0	0.26	1	0.1621	0.0649	MED15->chr22:20850200-20941919:+,mediator_complex_subunit_15,CCND2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:4382938-4414516:+,cyclin_D2	OE19_OESOPHAGUS	0.26	1	0.227	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	7	38	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	35	0	0.56	1	0.0757	0.4107	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.56	1	0.4864	FALSE	344	826	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	HSP90AB1--MT-RNR2	15	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2680	0	0.01	1	0.1621	0.0324	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OE19_OESOPHAGUS	0.01	1	0.1945	FALSE	13	9	0	364	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-TA--MT-TC	15	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1621	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE19_OESOPHAGUS	1	1	0.1621	FALSE	462	80	0	856	0	FALSE	ACH-000679
OE19_OESOPHAGUS	PGAP3--NT5C3B	9	24	PGAP3	4973	chr17:37840850:-	NT5C3B	14673	chr17:39991524:-	ONLY_REF_SPLICE	YES	2620	17	0.01	0.66	0.0973	0.2594	PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,NT5C3B->5'-nucleotidase,_cytosolic_IIIB,chr17:39981335-39992523:-	OE19_OESOPHAGUS	0.01	0.66	0.3567	TRUE	0	0	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	7	29	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0757	0.3135	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.92	1	0.3892	FALSE	344	821	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	JUP--MT-CO3	12	8	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	7144	13040	0	0	0.1297	0.0865	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OE19_OESOPHAGUS	0	0	0.2162	FALSE	0	0	0	33	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	4	40	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	29	0	0.6	1	0.0432	0.4324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.6	1	0.4756	FALSE	344	826	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND6--MT-TE	9	19	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0973	0.2054	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE19_OESOPHAGUS	0.97	1	0.3027	FALSE	499	1288	110	792	0	FALSE	ACH-000679
OE19_OESOPHAGUS	ERBB2--JUP	8	20	ERBB2	24628	chr17:37883778:+	JUP	38853	chr17:39921042:-	INCL_NON_REF_SPLICE	YES	6063	6521	0	0	0.0865	0.2162	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Skin=[count:6=pct:1.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=12;pct=0.14%;dist=Skin_-_Sun_Exposed_(Lower_leg)=7,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Esophagus_-_Mucosa=2},ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,JUP->chr17:39775692-39943183:-,junction_plakoglobin	OE19_OESOPHAGUS	0	0	0.3027	TRUE	0	0	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND3--MT-ATP8	13	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1405	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OE19_OESOPHAGUS	1	1	0.1405	FALSE	351	233	23	137	0	FALSE	ACH-000679
OE19_OESOPHAGUS	PGAP3--PIPOX	12	4	PGAP3	4973	chr17:37840850:-	PIPOX	26605	chr17:27381563:+	ONLY_REF_SPLICE	YES	2620	20	0.01	0.44	0.1297	0.0432	PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,PIPOX->chr17:27277531-27384234:+,pipecolic_acid_and_sarcosine_oxidase	OE19_OESOPHAGUS	0.01	0.44	0.1729	TRUE	0	0	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	3	38	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	34	0	0.55	1	0.0324	0.4107	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.55	1	0.4431	FALSE	344	826	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	3	37	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	21	0	0.66	1	0.0324	0.3999	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.66	1	0.4323	FALSE	344	826	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	PHF12--MYO18A	1	45	PHF12	3104	chr17:27276686:-	MYO18A	44453	chr17:27441115:-	ONLY_REF_SPLICE	YES	55	351	0.46	0.12	0.0108	0.4864	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hippocampus=1},{Klijn_CCL:Lung=1},PHF12->PHD_finger_protein_12,chr17:27232268-27278789:-,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	OE19_OESOPHAGUS	0.12	0.46	0.4972	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	12	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1297	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	1	1	0.1297	FALSE	344	821	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	JUP--MT-CO3	8	14	JUP	8242	chr17:39923795:-	MT-CO3	24128	chrM:9574:+	INCL_NON_REF_SPLICE	YES	6752	12662	0	0	0.0865	0.1513	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OE19_OESOPHAGUS	0	0	0.2378	FALSE	0	0	0	33	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-TA--MT-TC	6	20	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0.2162	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE19_OESOPHAGUS	1	1	0.2811	FALSE	462	80	0	856	0	FALSE	ACH-000679
OE19_OESOPHAGUS	HSP90AB1--MT-RNR2	10	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2702	0	0	1	0.1081	0.0216	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OE19_OESOPHAGUS	0	1	0.1297	FALSE	13	9	0	364	0	FALSE	ACH-000679
OE19_OESOPHAGUS	ERBB2--MT-ND2	6	17	ERBB2	24821	chr17:37883971:+	MT-ND2	30577	chrM:4877:+	INCL_NON_REF_SPLICE	YES	5434	17891	0	0	0.0649	0.1838	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OE19_OESOPHAGUS	0	0	0.2487	FALSE	0	0	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ATP6--MT-CO1	9	2	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	10895	21342	0	0	0.0973	0.0216	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE19_OESOPHAGUS	0	0	0.1189	FALSE	183	104	9	328	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MUC5B--MT-ATP6	8	5	MUC5B	37133	chr11:1282732:+	MT-ATP6	41208	chrM:8927:+	INCL_NON_REF_SPLICE	YES	890	10614	0.01	0	0.0865	0.054	MUC5B->chr11:1244296-1283406:+,mucin_5B,_oligomeric_mucus/gel-forming,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OE19_OESOPHAGUS	0	0.01	0.1405	FALSE	2	0	0	6	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ATP6--MT-CO1	9	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0973	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE19_OESOPHAGUS	1	1	0.0973	FALSE	183	104	9	328	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND6--MT-TE	6	12	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0.1297	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE19_OESOPHAGUS	1	1	0.1946	FALSE	499	1288	110	792	0	FALSE	ACH-000679
OE19_OESOPHAGUS	NRIP1--AF127936.7	9	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0973	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OE19_OESOPHAGUS	1	1	0.0973	FALSE	292	1546	117	613	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND6--MT-TE	3	23	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0324	0.2486	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE19_OESOPHAGUS	0.96	1	0.281	FALSE	499	1288	110	792	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND6--MT-TE	3	23	MT-ND6	1084	chrM:14590:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0324	0.2486	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE19_OESOPHAGUS	0.96	1	0.281	FALSE	499	1288	110	792	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	5	14	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	32	0	0.37	1	0.054	0.1513	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.37	1	0.2053	FALSE	344	826	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	HAP1--FKBP10	1	29	HAP1	5355	chr17:39884014:-	FKBP10	19066	chr17:39974341:+	ONLY_REF_SPLICE	YES	7	250	0.81	0.11	0.0108	0.3135	LOCAL_INVERSION:-:+:[78036],HAP1->chr17:39873994-39890896:-,huntingtin-associated_protein_1,FKBP10->FK506_binding_protein_10,chr17:39968932-39979465:+	OE19_OESOPHAGUS	0.11	0.81	0.3243	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	4	15	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	70	0	0.21	1	0.0432	0.1621	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.21	1	0.2053	FALSE	344	827	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	HAP1--FKBP10	1	25	HAP1	3785	chr17:39887745:-	FKBP10	18035	chr17:39973310:+	ONLY_REF_SPLICE	NO	105	48	0.2	0.35	0.0108	0.2702	LOCAL_INVERSION:-:+:[78036],HAP1->chr17:39873994-39890896:-,huntingtin-associated_protein_1,FKBP10->FK506_binding_protein_10,chr17:39968932-39979465:+	OE19_OESOPHAGUS	0.2	0.35	0.281	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	MT-ATP6--MT-CO1	6	5	MT-ATP6	1477	chrM:9003:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	NO	7451	21408	0	0	0.0649	0.054	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE19_OESOPHAGUS	0	0	0.1189	FALSE	183	104	9	328	0	FALSE	ACH-000679
OE19_OESOPHAGUS	RP11-123O10.4--GRIP1	7	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0757	0.0108	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OE19_OESOPHAGUS	1	1	0.0865	FALSE	416	2512	207	587	0	FALSE	ACH-000679
OE19_OESOPHAGUS	ERBB2--EIF1	3	16	ERBB2	17632	chr17:37873632:+	EIF1	30385	chr17:39845352:+	INCL_NON_REF_SPLICE	NO	7503	3913	0	0	0.0324	0.1729	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1	OE19_OESOPHAGUS	0	0	0.2053	FALSE	0	0	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	FGD4--CMAS	7	0	FGD4	1431	chr12:32552893:+	CMAS	39253	chr12:22208083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0757	0	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	OE19_OESOPHAGUS	1	1	0.0757	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	MT-ND6--MT-TE	7	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0757	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE19_OESOPHAGUS	1	1	0.0757	FALSE	499	1288	110	792	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ATP6--MT-CO1	6	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3229	23654	0	0	0.0649	0.0324	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE19_OESOPHAGUS	0	0	0.0973	FALSE	183	104	9	328	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND6--MT-TE	3	15	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0324	0.1621	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE19_OESOPHAGUS	0.95	1	0.1945	FALSE	499	1288	110	792	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND6--MT-TE	3	15	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0.1621	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE19_OESOPHAGUS	1	1	0.1945	FALSE	499	1288	110	792	0	FALSE	ACH-000679
OE19_OESOPHAGUS	DOCK7--CACHD1	5	6	DOCK7	29950	chr1:63003562:-	CACHD1	79049	chr1:65137247:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.054	0.0649	DOCK7->chr1:62920399-63153969:-,dedicator_of_cytokinesis_7,CACHD1->cache_domain_containing_1,chr1:64936428-65158741:+	OE19_OESOPHAGUS	0.85	1	0.1189	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	ERBB2--MT-ND2	5	6	ERBB2	11903	chr17:37866441:+	MT-ND2	30537	chrM:4837:+	INCL_NON_REF_SPLICE	YES	5776	20821	0	0	0.054	0.0649	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OE19_OESOPHAGUS	0	0	0.1189	FALSE	0	0	0	2	0	FALSE	ACH-000679
OE19_OESOPHAGUS	ERBB2--MT-ND2	6	2	ERBB2	16444	chr17:37872444:+	MT-ND2	31009	chrM:5309:+	INCL_NON_REF_SPLICE	YES	8583	8954	0	0	0.0649	0.0216	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OE19_OESOPHAGUS	0	0	0.0865	FALSE	0	0	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	JUP--ERBB2	4	9	JUP	13556	chr17:39913667:-	ERBB2	43182	chr17:37879572:+	ONLY_REF_SPLICE	YES	7516	7538	0	0	0.0432	0.0973	GTEx&tcga_normals:2/3694=0.05%,JUP->chr17:39775692-39943183:-,junction_plakoglobin,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2	OE19_OESOPHAGUS	0	0	0.1405	TRUE	0	0	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	SLC1A5--MT-ND4L	6	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	886	0	0.01	1	0.0649	0.0108	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	0.01	1	0.0757	FALSE	0	0	0	189	0	FALSE	ACH-000679
OE19_OESOPHAGUS	C15orf57--CBX3	5	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	42	11	0.18	0.45	0.054	0.0432	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OE19_OESOPHAGUS	0.18	0.45	0.0972	TRUE	267	562	48	632	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	6	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	1	1	0.0649	FALSE	344	821	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	AGPS--PACRG	5	3	AGPS	10716	chr2:178333252:+	PACRG	43818	chr6:163735859:+	ONLY_REF_SPLICE	YES	62	0	0.11	1	0.054	0.0324	AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+,PACRG->PARK2_co-regulated,chr6:163148164-163736524:+	OE19_OESOPHAGUS	0.11	1	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	DDX23--RP11-554L12.1	2	15	DDX23	4063	chr12:49239357:-	RP11-554L12.1	20566	chr12:39481794:-	ONLY_REF_SPLICE	YES	103	73	0.14	0.19	0.0216	0.1621	DDX23->DEAD-box_helicase_23,chr12:49223547-49246625:-,RP11-554L12.1->chr12:39481515-39486676:-	OE19_OESOPHAGUS	0.14	0.19	0.1837	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	ERBB2--MT-ND2	4	7	ERBB2	24595	chr17:37883745:+	MT-ND2	30929	chrM:5229:+	INCL_NON_REF_SPLICE	YES	5537	12823	0	0	0.0432	0.0757	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OE19_OESOPHAGUS	0	0	0.1189	FALSE	0	0	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	ERBB2--MT-ND2	4	6	ERBB2	11905	chr17:37866443:+	MT-ND2	30535	chrM:4835:+	INCL_NON_REF_SPLICE	YES	5804	20723	0	0	0.0432	0.0649	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	OE19_OESOPHAGUS	0	0	0.1081	FALSE	0	0	0	2	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-TA--MT-TC	3	9	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0.0973	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OE19_OESOPHAGUS	1	1	0.1297	FALSE	462	80	0	856	0	FALSE	ACH-000679
OE19_OESOPHAGUS	C17orf76-AS1--SEPT9	5	0	C17orf76-AS1	1593	chr17:16342728:+	SEPT9	45890	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.054	0	C17orf76-AS1->chr17:16342136-16381992:+,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	OE19_OESOPHAGUS	1	1	0.054	TRUE	0	3	0	6	0	TRUE	ACH-000679
OE19_OESOPHAGUS	CASC9--RP11-300E4.2	5	0	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	OE19_OESOPHAGUS	1	1	0.054	TRUE	0	23	0	19	23	TRUE	ACH-000679
OE19_OESOPHAGUS	MT-ND1--MT-RNR2	4	4	MT-ND1	1246	chrM:3552:+	MT-RNR2	5019	chrM:1733:+	INCL_NON_REF_SPLICE	YES	18	0	0.31	1	0.0432	0.0432	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OE19_OESOPHAGUS	0.31	1	0.0864	FALSE	114	26	4	85	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	5	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	1	1	0.054	FALSE	344	821	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	AGPS--AC009478.1	4	3	AGPS	10716	chr2:178333252:+	AC009478.1	32498	chr2:181465634:-	ONLY_REF_SPLICE	YES	62	0	0.1	1	0.0432	0.0324	AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+,AC009478.1->chr2:181436439-181557181:-	OE19_OESOPHAGUS	0.1	1	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	JUP--ERBB2	4	3	JUP	1344	chr17:39942840:-	ERBB2	24543	chr17:37844949:+	ONLY_REF_SPLICE	YES	948	324	0.01	0.02	0.0432	0.0324	GTEx&tcga_normals:2/3694=0.05%,JUP->chr17:39775692-39943183:-,junction_plakoglobin,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2	OE19_OESOPHAGUS	0.01	0.02	0.0756	FALSE	0	0	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	NRIP1--AF127936.7	4	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.45	1	0.0432	0.0108	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OE19_OESOPHAGUS	0.45	1	0.054	FALSE	164	806	69	479	0	FALSE	ACH-000679
OE19_OESOPHAGUS	SAMD5--SASH1	4	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	9	1	0.36	0.83	0.0432	0.0108	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	OE19_OESOPHAGUS	0.36	0.83	0.054	TRUE	53	396	64	110	0	FALSE	ACH-000679
OE19_OESOPHAGUS	FGD4--RP11-729I10.2	4	0	FGD4	1431	chr12:32552893:+	RP11-729I10.2	40164	chr12:22022516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,RP11-729I10.2->chr12:21980144-22040891:+	OE19_OESOPHAGUS	1	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE19_OESOPHAGUS	1	1	0.0432	FALSE	183	104	9	328	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND4--MT-ND4L	3	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0.0432	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OE19_OESOPHAGUS	1	1	0.0756	FALSE	344	821	44	306	0	FALSE	ACH-000679
OE19_OESOPHAGUS	NAALADL2--KRT42P	4	0	NAALADL2	2201	chr3:174158822:+	KRT42P	46110	chr17:39791654:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0432	0	NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+,KRT42P->chr17:39782579-39796451:-,keratin_42_pseudogene	OE19_OESOPHAGUS	1	1	0.0432	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0432	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OE19_OESOPHAGUS	1	1	0.0432	TRUE	0	0	0	434	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND6--MT-TE	3	3	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0324	0.0324	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE19_OESOPHAGUS	0.86	1	0.0648	FALSE	499	1288	110	792	0	FALSE	ACH-000679
OE19_OESOPHAGUS	C15orf57--CBX3	3	2	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	35	12	0.12	0.29	0.0324	0.0216	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OE19_OESOPHAGUS	0.12	0.29	0.054	TRUE	267	562	48	632	0	FALSE	ACH-000679
OE19_OESOPHAGUS	FBXL17--KIAA0825	3	2	FBXL17	9230	chr5:107356626:-	KIAA0825	49377	chr5:93489829:-	ONLY_REF_SPLICE	YES	11	0	0.31	1	0.0324	0.0216	FBXL17->F-box_and_leucine-rich_repeat_protein_17,chr5:107194736-107717799:-,KIAA0825->KIAA0825,chr5:93488671-93954309:-	OE19_OESOPHAGUS	0.31	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	MT-ATP6--MT-CO1	3	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	NO	10437	21590	0	0	0.0324	0.0216	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE19_OESOPHAGUS	0	0	0.054	FALSE	183	104	9	328	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MUC5B--MT-ATP6	3	2	MUC5B	24533	chr11:1270021:+	MT-ATP6	40749	chrM:8468:+	INCL_NON_REF_SPLICE	NO	907	0	0.01	1	0.0324	0.0216	MUC5B->chr11:1244296-1283406:+,mucin_5B,_oligomeric_mucus/gel-forming,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OE19_OESOPHAGUS	0.01	1	0.054	FALSE	0	0	0	2	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MUC5B--MT-ATP6	3	1	MUC5B	20762	chr11:1266250:+	MT-ATP6	40749	chrM:8468:+	INCL_NON_REF_SPLICE	NO	283	0	0.01	1	0.0324	0.0108	MUC5B->chr11:1244296-1283406:+,mucin_5B,_oligomeric_mucus/gel-forming,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OE19_OESOPHAGUS	0.01	1	0.0432	FALSE	0	0	0	2	0	FALSE	ACH-000679
OE19_OESOPHAGUS	ASS1--MT-CO3	3	0	ASS1	7359	chr9:133339534:+	MT-CO3	21796	chrM:9549:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	ASS1->argininosuccinate_synthase_1,chr9:133320316-133376661:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OE19_OESOPHAGUS	1	1	0.0324	FALSE	0	0	0	12	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE19_OESOPHAGUS	1	1	0.0324	FALSE	183	104	9	328	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ATP6--MT-CO1	3	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5953	chrM:7175:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OE19_OESOPHAGUS	1	1	0.0324	FALSE	183	104	9	328	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND3--MT-ATP8	3	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OE19_OESOPHAGUS	1	1	0.0324	FALSE	351	233	23	137	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE19_OESOPHAGUS	1	1	0.0324	FALSE	499	1288	110	792	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE19_OESOPHAGUS	1	1	0.0324	FALSE	499	1288	110	792	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE19_OESOPHAGUS	1	1	0.0324	FALSE	499	1288	110	792	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND6--MT-TE	3	0	MT-ND6	1051	chrM:14623:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE19_OESOPHAGUS	1	1	0.0324	FALSE	499	1288	110	792	0	FALSE	ACH-000679
OE19_OESOPHAGUS	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0324	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OE19_OESOPHAGUS	1	1	0.0324	FALSE	499	1288	110	792	0	FALSE	ACH-000679
OE19_OESOPHAGUS	PGAP3--NT5C3B	2	2	PGAP3	2566	chr17:37844087:-	NT5C3B	14673	chr17:39991524:-	ONLY_REF_SPLICE	YES	1582	17	0	0.19	0.0216	0.0216	PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,NT5C3B->5'-nucleotidase,_cytosolic_IIIB,chr17:39981335-39992523:-	OE19_OESOPHAGUS	0	0.19	0.0432	FALSE	0	0	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.2	1	0.0216	0.0108	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OE19_OESOPHAGUS	0.2	1	0.0324	FALSE	125	705	46	456	0	FALSE	ACH-000679
OE19_OESOPHAGUS	RP11-1L12.3--SLC5A12	2	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	6	0	0.33	1	0.0216	0.0108	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	OE19_OESOPHAGUS	0.33	1	0.0324	TRUE	3	101	0	60	0	FALSE	ACH-000679
OE19_OESOPHAGUS	WDTC1--DYM	2	1	WDTC1	1436	chr1:27561442:+	DYM	54993	chr18:46623868:-	ONLY_REF_SPLICE	YES	15	54	0.17	0.05	0.0216	0.0108	WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	OE19_OESOPHAGUS	0.05	0.17	0.0324	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	CPSF6--CHMP1A	2	0	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	OE19_OESOPHAGUS	1	1	0.0216	TRUE	95	74	6	34	0	FALSE	ACH-000679
OE19_OESOPHAGUS	EPC1--PFKP	2	0	EPC1	4087	chr10:32635691:-	PFKP	30507	chr10:3124580:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	EPC1->chr10:32556679-32667726:-,enhancer_of_polycomb_homolog_1,PFKP->chr10:3108525-3179904:+,phosphofructokinase,_platelet	OE19_OESOPHAGUS	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	GRHL2--YWHAZ	2	0	GRHL2	1358	chr8:102505017:+	YWHAZ	32633	chr8:101937267:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	GRHL2->chr8:102504660-102681954:+,grainyhead_like_transcription_factor_2,YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta	OE19_OESOPHAGUS	1	1	0.0216	TRUE	0	0	0	2	0	TRUE	ACH-000679
OE19_OESOPHAGUS	QSOX2--SET	2	0	QSOX2	1366	chr9:139137322:-	SET	22312	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0216	0	QSOX2->chr9:139098179-139137687:-,quiescin_sulfhydryl_oxidase_2,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OE19_OESOPHAGUS	1	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	WDTC1--DYM	1	4	WDTC1	1436	chr1:27561442:+	DYM	43558	chr18:46812983:-	ONLY_REF_SPLICE	YES	15	21	0.25	0.19	0.0108	0.0432	WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	OE19_OESOPHAGUS	0.19	0.25	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	WDTC1--DYM	1	4	WDTC1	2583	chr1:27587593:+	DYM	45917	chr18:46798673:-	ONLY_REF_SPLICE	YES	35	43	0.12	0.1	0.0108	0.0432	WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	OE19_OESOPHAGUS	0.1	0.12	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	WDTC1--DYM	1	4	WDTC1	1436	chr1:27561442:+	DYM	43555	chr18:46812986:-	ONLY_REF_SPLICE	YES	15	21	0.25	0.19	0.0108	0.0432	WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+,DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin	OE19_OESOPHAGUS	0.19	0.25	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	ADAP1--MAFK	1	2	ADAP1	9672	chr7:959605:-	MAFK	22677	chr7:1578785:+	ONLY_REF_SPLICE	NO	436	5	0.01	0.38	0.0108	0.0216	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,MAFK->Oncogene{Bushman},chr7:1570350-1582679:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_K	OE19_OESOPHAGUS	0.01	0.38	0.0324	FALSE	1	1	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	EIF1--JUP	1	2	EIF1	1185	chr17:39845321:+	JUP	18885	chr17:39915122:-	ONLY_REF_SPLICE	YES	3836	8539	0	0	0.0108	0.0216	NEIGHBORS_OVERLAP:+:-:[3783],EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,JUP->chr17:39775692-39943183:-,junction_plakoglobin	OE19_OESOPHAGUS	0	0	0.0324	FALSE	0	0	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	JUP--ERBB2	1	2	JUP	1344	chr17:39942840:-	ERBB2	25648	chr17:37849514:+	ONLY_REF_SPLICE	NO	948	442	0	0.01	0.0108	0.0216	GTEx&tcga_normals:2/3694=0.05%,JUP->chr17:39775692-39943183:-,junction_plakoglobin,ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2	OE19_OESOPHAGUS	0	0.01	0.0324	FALSE	0	0	0	1	0	FALSE	ACH-000679
OE19_OESOPHAGUS	DHX58--RP11-115J16.2	1	1	DHX58	5633	chr17:40259622:-	RP11-115J16.2	20081	chr8:9232649:-	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0108	0.0108	DHX58->DEXH-box_helicase_58,chr17:40253422-40264751:-,RP11-115J16.2->chr8:9229480-9293715:-	OE19_OESOPHAGUS	0.33	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	FGD4--RP11-729I10.2	1	1	FGD4	1431	chr12:32552893:+	RP11-729I10.2	37833	chr12:21980144:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0108	0.0108	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,RP11-729I10.2->chr12:21980144-22040891:+	OE19_OESOPHAGUS	0.67	1	0.0216	TRUE	0	0	0	1	0	TRUE	ACH-000679
OE19_OESOPHAGUS	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0108	0.0108	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OE19_OESOPHAGUS	1	1	0.0216	FALSE	93	270	15	244	0	FALSE	ACH-000679
FTC238_THYROID	RP11-307P5.1--STXBP5	142	28	RP11-307P5.1	1117	chr6:147981955:+	STXBP5	41144	chr6:147703914:+	ONLY_REF_SPLICE	YES	24	20	0.88	0.89	1.4763	0.2911	RP11-307P5.1->chr6:147981839-148275073:+,STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5	FTC238_THYROID	0.88	0.89	1.7674	TRUE	0	0	0	1	0	TRUE	ACH-000897
FTC238_THYROID	CLTC--VMP1	97	44	CLTC	1316	chr17:57697534:+	VMP1	53132	chr17:57915656:+	ONLY_REF_SPLICE	YES	107	192	0.57	0.42	1.0085	0.4575	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	FTC238_THYROID	0.42	0.57	1.466	FALSE	0	6	0	10	0	FALSE	ACH-000897
FTC238_THYROID	TIMM23B--LINC00843	61	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6342	0.1352	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	FTC238_THYROID	1	1	0.7694	TRUE	508	994	45	981	0	FALSE	ACH-000897
FTC238_THYROID	RP11-307P5.1--SASH1	49	19	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	1	2	0.99	0.97	0.5094	0.1975	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	FTC238_THYROID	0.97	0.99	0.7069	TRUE	0	2	0	37	2	FALSE	ACH-000897
FTC238_THYROID	WI2-1896O14.1--RP11-353N4.1	46	9	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4782	0.0936	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	FTC238_THYROID	1	1	0.5718	TRUE	361	258	24	38	0	FALSE	ACH-000897
FTC238_THYROID	TIMM23--RP11-464F9.1	36	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	163	1	0.19	0.97	0.3743	0.0208	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	FTC238_THYROID	0.19	0.97	0.3951	TRUE	519	3926	326	965	0	FALSE	ACH-000897
FTC238_THYROID	RP11-344E13.3--UBBP4	30	20	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3119	0.2079	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	FTC238_THYROID	1	1	0.5198	TRUE	23	13	0	54	0	FALSE	ACH-000897
FTC238_THYROID	C15orf57--CBX3	24	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	22	38	0.56	0.42	0.2495	0.0416	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	FTC238_THYROID	0.42	0.56	0.2911	TRUE	267	562	48	632	0	FALSE	ACH-000897
FTC238_THYROID	SERPINE1--MT-ND4	18	0	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1871	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	FTC238_THYROID	1	1	0.1871	FALSE	1	0	0	29	0	FALSE	ACH-000897
FTC238_THYROID	RP11-307P5.1--STXBP5	9	29	RP11-307P5.1	2198	chr6:147997291:+	STXBP5	41144	chr6:147703914:+	ONLY_REF_SPLICE	YES	118	20	0.24	0.66	0.0936	0.3015	RP11-307P5.1->chr6:147981839-148275073:+,STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5	FTC238_THYROID	0.24	0.66	0.3951	TRUE	0	0	0	1	0	TRUE	ACH-000897
FTC238_THYROID	AP000525.9--LA16c-60G3.6	12	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1248	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	FTC238_THYROID	1	1	0.1248	TRUE	0	42	0	133	42	FALSE	ACH-000897
FTC238_THYROID	MT-TA--MT-TC	11	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1144	0.0208	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	FTC238_THYROID	1	1	0.1352	FALSE	462	80	0	856	0	FALSE	ACH-000897
FTC238_THYROID	HSPBP1--GRK5	11	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1144	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	FTC238_THYROID	1	1	0.1144	TRUE	1	39	0	134	39	FALSE	ACH-000897
FTC238_THYROID	C15orf57--CBX3	7	1	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	17	40	0.32	0.17	0.0728	0.0104	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	FTC238_THYROID	0.17	0.32	0.0832	TRUE	267	562	48	632	0	FALSE	ACH-000897
FTC238_THYROID	MT-ND5--MT-ND4	3	14	MT-ND5	2705	chrM:14041:+	MT-ND4	5940	chrM:10887:+	INCL_NON_REF_SPLICE	YES	146	1410	0.1	0.01	0.0312	0.1456	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	FTC238_THYROID	0.01	0.1	0.1768	FALSE	29	25	1	23	0	FALSE	ACH-000897
FTC238_THYROID	MAF--RP11-679B19.2	5	4	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0.0416	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	FTC238_THYROID	1	1	0.0936	TRUE	48	25	3	38	0	FALSE	ACH-000897
FTC238_THYROID	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0624	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	FTC238_THYROID	1	1	0.0624	TRUE	465	1949	224	605	0	FALSE	ACH-000897
FTC238_THYROID	RP11-307P5.1--SASH1	4	3	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	24	2	0.23	0.78	0.0416	0.0312	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	FTC238_THYROID	0.23	0.78	0.0728	TRUE	0	0	0	16	0	TRUE	ACH-000897
FTC238_THYROID	MT-ND5--MT-ND4	3	6	MT-ND5	2317	chrM:13653:+	MT-ND4	6294	chrM:11241:+	INCL_NON_REF_SPLICE	YES	1442	6829	0.01	0	0.0312	0.0624	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	FTC238_THYROID	0	0.01	0.0936	FALSE	47	29	1	24	0	FALSE	ACH-000897
FTC238_THYROID	RP11-6N13.1--CTD-2374C24.1	4	2	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0.0208	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	FTC238_THYROID	1	1	0.0624	TRUE	5	4	0	46	0	FALSE	ACH-000897
FTC238_THYROID	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	FTC238_THYROID	1	1	0.0416	FALSE	183	104	9	328	0	FALSE	ACH-000897
FTC238_THYROID	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	FTC238_THYROID	1	1	0.0416	TRUE	458	1351	185	561	0	FALSE	ACH-000897
FTC238_THYROID	RP11-96H19.1--RP11-446N19.1	4	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	FTC238_THYROID	1	1	0.0416	FALSE	407	2205	196	549	0	FALSE	ACH-000897
FTC238_THYROID	RPLP1--TAGLN2	4	0	RPLP1	1170	chr15:69745292:+	TAGLN2	12429	chr1:159888329:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,TAGLN2->chr1:159887897-159895522:-,transgelin_2	FTC238_THYROID	1	1	0.0416	TRUE	0	0	0	4	0	TRUE	ACH-000897
FTC238_THYROID	MT-TA--MT-TC	3	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0.0208	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	FTC238_THYROID	1	1	0.052	FALSE	462	80	0	856	0	FALSE	ACH-000897
FTC238_THYROID	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	FTC238_THYROID	1	1	0.0312	TRUE	0	5	0	18	5	TRUE	ACH-000897
FTC238_THYROID	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	FTC238_THYROID	1	1	0.0312	TRUE	0	8	0	10	8	TRUE	ACH-000897
FTC238_THYROID	MT-ATP6--MT-CO1	3	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	FTC238_THYROID	1	1	0.0312	FALSE	183	104	9	328	0	FALSE	ACH-000897
FTC238_THYROID	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	FTC238_THYROID	1	1	0.0312	TRUE	0	0	0	434	0	FALSE	ACH-000897
FTC238_THYROID	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	38	0.36	0.1	0.0208	0.0208	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	FTC238_THYROID	0.1	0.36	0.0416	FALSE	16	356	14	466	0	FALSE	ACH-000897
FTC238_THYROID	RP11-6N13.1--CTD-2374C24.1	2	2	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0.0208	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	FTC238_THYROID	1	1	0.0416	TRUE	5	12	0	42	0	FALSE	ACH-000897
FTC238_THYROID	EFCAB11--RP11-944C7.1	2	1	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	27	0	0.1	1	0.0208	0.0104	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	FTC238_THYROID	0.1	1	0.0312	TRUE	31	91	1	18	0	FALSE	ACH-000897
FTC238_THYROID	NCOR1P2--KCNJ12	2	1	NCOR1P2	1104	chr17:21536117:+	KCNJ12	8204	chr17:21311831:+	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0208	0.0104	NCOR1P2->chr17:21536014-21544603:+,nuclear_receptor_corepressor_1_pseudogene_2,KCNJ12->chr17:21279509-21323179:+,potassium_voltage-gated_channel_subfamily_J_member_12	FTC238_THYROID	0.75	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000897
FTC238_THYROID	RP11-307P5.1--SASH1	1	5	RP11-307P5.1	6659	chr6:148268655:+	SASH1	15276	chr6:148761494:+	ONLY_REF_SPLICE	YES	1	17	0.86	0.26	0.0104	0.052	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	FTC238_THYROID	0.26	0.86	0.0624	TRUE	0	0	0	2	0	TRUE	ACH-000897
FTC238_THYROID	RP11-6N13.1--CTD-2374C24.1	2	1	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0.0104	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	FTC238_THYROID	1	1	0.0312	TRUE	1	1	0	17	1	FALSE	ACH-000897
FTC238_THYROID	EMC2--EIF3E	2	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	FTC238_THYROID	1	1	0.0208	TRUE	0	0	0	12	0	TRUE	ACH-000897
FTC238_THYROID	MB21D2--GOLIM4	2	0	MB21D2	1532	chr3:192635419:-	GOLIM4	10246	chr3:167766153:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,GOLIM4->chr3:167726465-167813763:-,golgi_integral_membrane_protein_4	FTC238_THYROID	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000897
FTC238_THYROID	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	FTC238_THYROID	1	1	0.0208	FALSE	515	4851	409	746	0	FALSE	ACH-000897
FTC238_THYROID	SMAD2--CHRNA5	2	0	SMAD2	13078	chr18:45391430:-	CHRNA5	38080	chr15:78885434:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	SMAD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_2,chr18:45357922-45457515:-,CHRNA5->cholinergic_receptor_nicotinic_alpha_5_subunit,chr15:78857862-78887611:+	FTC238_THYROID	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000897
FTC238_THYROID	SOGA3--LUC7L2	2	0	SOGA3	1777	chr6:127839724:-	LUC7L2	37759	chr7:139106909:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	SOGA3->SOGA_family_member_3,chr6:127759551-127840146:-,chr6:127759551-127840500:-,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	FTC238_THYROID	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000897
FTC238_THYROID	ASPH--RAB2A	1	1	ASPH	27900	chr8:62531537:-	RAB2A	50700	chr8:61471411:+	ONLY_REF_SPLICE	NO	94	194	0.02	0.01	0.0104	0.0104	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,RAB2A->RAB2A,_member_RAS_oncogene_family,chr8:61429416-61536186:+	FTC238_THYROID	0.01	0.02	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000897
FTC238_THYROID	FAM122C--HPRT1	1	1	FAM122C	3740	chrX:133941738:+	HPRT1	30193	chrX:133632420:+	ONLY_REF_SPLICE	NO	11	425	0.15	0	0.0104	0.0104	FAM122C->chrX:133930819-133988640:+,family_with_sequence_similarity_122C,HPRT1->chrX:133594183-133654543:+,hypoxanthine_phosphoribosyltransferase_1	FTC238_THYROID	0	0.15	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000897
FTC238_THYROID	RASA2--ZBTB38	1	1	RASA2	5564	chr3:141259451:+	ZBTB38	53331	chr3:141161231:+	ONLY_REF_SPLICE	YES	14	62	0.12	0.03	0.0104	0.0104	YOSHIHARA_TCGA_num_samples[BLCA:1|LUAD:1],LOCAL_REARRANGEMENT:+:[37255],RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,ZBTB38->chr3:141043055-141168634:+,zinc_finger_and_BTB_domain_containing_38	FTC238_THYROID	0.03	0.12	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000897
FTC238_THYROID	SCAMP1--AP3B1	1	1	SCAMP1	1214	chr5:77656552:+	AP3B1	23233	chr5:77536760:-	ONLY_REF_SPLICE	NO	43	49	0.04	0.04	0.0104	0.0104	GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[65760],SCAMP1->chr5:77656339-77776562:+,secretory_carrier_membrane_protein_1,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	FTC238_THYROID	0.04	0.04	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000897
FTC238_THYROID	SCAMP1--AP3B1	1	1	SCAMP1	1214	chr5:77656552:+	AP3B1	43235	chr5:77396849:-	ONLY_REF_SPLICE	YES	43	130	0.04	0.02	0.0104	0.0104	GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[65760],SCAMP1->chr5:77656339-77776562:+,secretory_carrier_membrane_protein_1,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	FTC238_THYROID	0.02	0.04	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000897
TTC1240_SOFT_TISSUE	TIMM23B--LINC00843	55	42	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8636	0.6595	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TTC1240_SOFT_TISSUE	1	1	1.5231	TRUE	508	994	45	981	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	TANC2--CYB561	46	58	TANC2	22474	chr17:61432751:+	CYB561	56503	chr17:61514921:-	ONLY_REF_SPLICE	YES	164	3	0.39	0.97	0.7223	0.9107	LOCAL_INVERSION:+:-:[4605],TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,CYB561->chr17:61509665-61523739:-,cytochrome_b561	TTC1240_SOFT_TISSUE	0.39	0.97	1.633	TRUE	0	0	0	1	0	TRUE	ACH-001210
TTC1240_SOFT_TISSUE	MT-TA--MT-TN	60	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9421	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC1240_SOFT_TISSUE	1	1	0.9421	FALSE	369	2501	205	193	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	TIMM23--RP11-464F9.1	40	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	326	3	0.13	0.94	0.6281	0.1099	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TTC1240_SOFT_TISSUE	0.13	0.94	0.738	TRUE	519	3926	326	965	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-ND6--MT-TE	31	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4868	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC1240_SOFT_TISSUE	1	1	0.4868	FALSE	499	1288	110	792	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	ZNF654--HMGB2	28	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4397	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TTC1240_SOFT_TISSUE	1	1	0.4397	TRUE	0	0	0	518	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-TA--MT-TN	16	29	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2512	0.4554	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC1240_SOFT_TISSUE	1	1	0.7066	FALSE	369	2501	205	193	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-TA--MT-TN	14	36	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2198	0.5653	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC1240_SOFT_TISSUE	1	1	0.7851	FALSE	369	2501	205	193	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-TA--MT-TC	20	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.314	0.0314	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TTC1240_SOFT_TISSUE	1	1	0.3454	FALSE	462	80	0	856	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-TA--MT-TN	17	8	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2669	0.1256	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC1240_SOFT_TISSUE	1	1	0.3925	FALSE	369	2501	205	193	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	SFMBT2--ITIH5	16	12	SFMBT2	1144	chr10:7453307:-	ITIH5	50069	chr10:7628032:-	ONLY_REF_SPLICE	YES	94	1072	0.23	0.03	0.2512	0.1884	SFMBT2->Oncogene{Bushman},Scm-like_with_four_mbt_domains_2,chr10:7200586-7453450:-,ITIH5->chr10:7601232-7708961:-,inter-alpha-trypsin_inhibitor_heavy_chain_family_member_5	TTC1240_SOFT_TISSUE	0.03	0.23	0.4396	TRUE	0	0	0	1	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-ND6--MT-TE	17	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.2669	0.0942	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC1240_SOFT_TISSUE	0.85	1	0.3611	FALSE	499	1288	110	792	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-TA--MT-TN	4	48	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0628	0.7537	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC1240_SOFT_TISSUE	1	1	0.8165	FALSE	369	2501	205	193	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-TA--MT-TN	9	26	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1413	0.4083	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC1240_SOFT_TISSUE	1	1	0.5496	FALSE	369	2501	205	193	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	C15orf57--CBX3	12	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	66	27	0.27	0.47	0.1884	0.1884	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TTC1240_SOFT_TISSUE	0.27	0.47	0.3768	TRUE	267	562	48	632	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-ND5--MT-ND6	13	4	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	2	3937	0.89	0	0.2041	0.0628	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	TTC1240_SOFT_TISSUE	0	0.89	0.2669	FALSE	26	124	4	93	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-TA--MT-TN	11	12	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1727	0.1884	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC1240_SOFT_TISSUE	1	1	0.3611	FALSE	369	2501	205	193	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-TA--MT-TN	6	32	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0942	0.5025	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC1240_SOFT_TISSUE	1	1	0.5967	FALSE	369	2501	205	193	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-ND6--MT-TE	13	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2041	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC1240_SOFT_TISSUE	1	1	0.2041	FALSE	499	1288	110	792	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	RP11-680G10.1--GSE1	10	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.87	0.157	0.157	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TTC1240_SOFT_TISSUE	0.87	1	0.314	TRUE	458	1351	185	561	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-TA--MT-TN	12	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1884	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC1240_SOFT_TISSUE	1	1	0.1884	FALSE	369	2501	205	193	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	RP11-680G10.1--GSE1	10	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	16	1	0.52	0.157	0.1099	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TTC1240_SOFT_TISSUE	0.52	1	0.2669	TRUE	465	1949	224	605	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-TA--MT-TC	10	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.157	0.0314	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TTC1240_SOFT_TISSUE	1	1	0.1884	FALSE	462	80	0	856	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	NIPA2--POLA1	9	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1413	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	TTC1240_SOFT_TISSUE	1	1	0.1413	TRUE	46	1352	75	139	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1413	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TTC1240_SOFT_TISSUE	1	1	0.1413	TRUE	0	0	0	434	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	C15orf57--CBX3	6	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	65	27	0.19	0.36	0.0942	0.1413	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TTC1240_SOFT_TISSUE	0.19	0.36	0.2355	TRUE	267	562	48	632	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-TA--MT-TN	8	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1256	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TTC1240_SOFT_TISSUE	1	1	0.1256	FALSE	369	2501	205	193	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	RP11-123O10.4--GRIP1	7	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1099	0.0628	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TTC1240_SOFT_TISSUE	1	1	0.1727	FALSE	416	2512	207	587	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-TA--MT-TC	7	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1099	0.0314	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TTC1240_SOFT_TISSUE	1	1	0.1413	FALSE	462	80	0	856	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1099	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TTC1240_SOFT_TISSUE	1	1	0.1099	FALSE	462	80	0	856	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-ND1--MT-RNR2	5	1	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	72	10927	0.08	0	0.0785	0.0157	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TTC1240_SOFT_TISSUE	0	0.08	0.0942	FALSE	120	26	5	87	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-ND5--MT-ND6	3	8	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0.1256	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	TTC1240_SOFT_TISSUE	1	1	0.1727	FALSE	26	124	4	93	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-ND6--MT-TE	4	2	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	3	0	0.67	1	0.0628	0.0314	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC1240_SOFT_TISSUE	0.67	1	0.0942	FALSE	499	1288	110	792	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-ND6--MT-TE	3	5	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0.0785	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC1240_SOFT_TISSUE	1	1	0.1256	FALSE	499	1288	110	792	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	SFMBT2--ITIH5	1	12	SFMBT2	2184	chr10:7451264:-	ITIH5	50069	chr10:7628032:-	ONLY_REF_SPLICE	YES	128	1072	0.09	0.01	0.0157	0.1884	SFMBT2->Oncogene{Bushman},Scm-like_with_four_mbt_domains_2,chr10:7200586-7453450:-,ITIH5->chr10:7601232-7708961:-,inter-alpha-trypsin_inhibitor_heavy_chain_family_member_5	TTC1240_SOFT_TISSUE	0.01	0.09	0.2041	TRUE	0	0	0	1	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-ND5--MT-ND6	3	2	MT-ND5	2812	chrM:14148:+	MT-ND6	6227	chrM:14259:-	INCL_NON_REF_SPLICE	YES	0	3000	1	0	0.0471	0.0314	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	TTC1240_SOFT_TISSUE	0	1	0.0785	FALSE	26	124	4	93	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-ND6--MT-TE	3	2	MT-ND6	1198	chrM:14476:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	5	0	0.5	1	0.0471	0.0314	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TTC1240_SOFT_TISSUE	0.5	1	0.0785	FALSE	499	1288	110	792	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	SFMBT2--ITIH5	3	2	SFMBT2	3904	chr10:7423761:-	ITIH5	55517	chr10:7615158:-	ONLY_REF_SPLICE	YES	209	1066	0.02	0	0.0471	0.0314	SFMBT2->Oncogene{Bushman},Scm-like_with_four_mbt_domains_2,chr10:7200586-7453450:-,ITIH5->chr10:7601232-7708961:-,inter-alpha-trypsin_inhibitor_heavy_chain_family_member_5	TTC1240_SOFT_TISSUE	0	0.02	0.0785	FALSE	0	0	0	1	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-ND1--MT-RNR2	3	1	MT-ND1	1267	chrM:3573:+	MT-RNR2	6490	chrM:3204:+	INCL_NON_REF_SPLICE	YES	74	8	0.05	0.33	0.0471	0.0157	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TTC1240_SOFT_TISSUE	0.05	0.33	0.0628	FALSE	92	21	4	61	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MT-ND1--MT-RNR2	3	1	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	74	0	0.05	1	0.0471	0.0157	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TTC1240_SOFT_TISSUE	0.05	1	0.0628	FALSE	114	26	4	85	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0471	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TTC1240_SOFT_TISSUE	1	1	0.0471	TRUE	0	0	0	434	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	SFMBT2--ITIH5	1	8	SFMBT2	1144	chr10:7453307:-	ITIH5	51238	chr10:7622027:-	ONLY_REF_SPLICE	YES	94	1328	0.09	0.01	0.0157	0.1256	SFMBT2->Oncogene{Bushman},Scm-like_with_four_mbt_domains_2,chr10:7200586-7453450:-,ITIH5->chr10:7601232-7708961:-,inter-alpha-trypsin_inhibitor_heavy_chain_family_member_5	TTC1240_SOFT_TISSUE	0.01	0.09	0.1413	TRUE	0	0	0	1	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	RP1-34H18.1--NAV3	2	3	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	210	1	0.02	0.0314	0.0471	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	TTC1240_SOFT_TISSUE	0.02	1	0.0785	TRUE	254	575	65	124	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	RP11-275N1.1--NEBL	1	6	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	9	9	0.44	0.44	0.0157	0.0942	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	TTC1240_SOFT_TISSUE	0.44	0.44	0.1099	TRUE	0	2	0	25	2	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	RP11-166D19.1--DNM3OS	2	1	RP11-166D19.1	5868	chr11:121971082:-	DNM3OS	18442	chr1:172113577:-	ONLY_REF_SPLICE	YES	56	79	0.05	0.04	0.0314	0.0157	GTEx_FI:{Ovary=[count:4=pct:7.5],Blood_Vessel=[count:3=pct:0.8],Thyroid=[count:2=pct:1.1],Uterus=[count:1=pct:2.3],Esophagus=[count:1=pct:0.2]},RP11-166D19.1->chr11:121899063-121987031:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	TTC1240_SOFT_TISSUE	0.04	0.05	0.0471	TRUE	11	20	1	11	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	RP11-275N1.1--NEBL	2	1	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	9	1	0.25	0.0314	0.0157	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	TTC1240_SOFT_TISSUE	0.25	1	0.0471	TRUE	0	0	0	21	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	SCARB1--UBC	2	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	TTC1240_SOFT_TISSUE	1	1	0.0314	TRUE	55	66	6	101	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	NAV3--RP1-34H18.1	1	3	NAV3	3667	chr12:78334913:+	RP1-34H18.1	56591	chr12:77965639:+	ONLY_REF_SPLICE	YES	299	2	0.01	0.67	0.0157	0.0471	NAV3->chr12:78224685-78606790:+,neuron_navigator_3,RP1-34H18.1->chr12:77718421-77966055:+	TTC1240_SOFT_TISSUE	0.01	0.67	0.0628	FALSE	0	0	0	1	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	FILIP1L--ABI3BP	1	2	FILIP1L	9706	chr3:99594916:-	ABI3BP	52363	chr3:100551194:-	ONLY_REF_SPLICE	YES	324	0	0.01	1	0.0157	0.0314	FILIP1L->chr3:99548985-99833357:-,filamin_A_interacting_protein_1-like,ABI3BP->ABI_family_member_3_binding_protein,chr3:100468000-100712359:-	TTC1240_SOFT_TISSUE	0.01	1	0.0471	FALSE	0	0	0	1	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	C18orf25--ATP5A1	1	1	C18orf25	1778	chr18:43754296:+	ATP5A1	17660	chr18:43675097:-	ONLY_REF_SPLICE	YES	104	1911	0.02	0	0.0157	0.0157	LOCAL_INVERSION:+:-:[69219],C18orf25->chr18:43753519-43846949:+,chromosome_18_open_reading_frame_25,ATP5A1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_alpha_subunit_1,_cardiac_muscle,chr18:43664110-43684300:-	TTC1240_SOFT_TISSUE	0	0.02	0.0314	FALSE	0	0	0	1	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	GALK2--COPS2	1	1	GALK2	19879	chr15:49584734:+	COPS2	30945	chr15:49437275:-	ONLY_REF_SPLICE	YES	37	4	0.05	0.33	0.0157	0.0157	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},NEIGHBORS_OVERLAP:+:-:[5],GALK2->chr15:49447853-49660066:+,galactokinase_2,COPS2->COP9_signalosome_subunit_2,Oncogene{Bushman},chr15:49398268-49447858:-	TTC1240_SOFT_TISSUE	0.05	0.33	0.0314	FALSE	0	0	0	1	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	MINOS1--CAPZB	1	1	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	86	117	0.02	0.02	0.0157	0.0157	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	TTC1240_SOFT_TISSUE	0.02	0.02	0.0314	TRUE	2	7	0	21	0	FALSE	ACH-001210
TTC1240_SOFT_TISSUE	WDR75--COL3A1	1	1	WDR75	4736	chr2:190315694:+	COL3A1	44107	chr2:189868708:+	ONLY_REF_SPLICE	YES	1645	7525	0	0	0.0157	0.0157	WDR75->WD_repeat_domain_75,chr2:190306159-190340291:+,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	TTC1240_SOFT_TISSUE	0	0	0.0314	FALSE	0	0	0	1	0	FALSE	ACH-001210
CAL78_BONE	IPO7--SLC22A18AS	45	32	IPO7	1226	chr11:9406394:+	SLC22A18AS	35727	chr11:2909865:-	ONLY_REF_SPLICE	YES	22	0	0.78	1	0.9133	0.6494	IPO7->chr11:9406169-9469673:+,importin_7,SLC22A18AS->chr11:2909010-2924970:-,solute_carrier_family_22_member_18_antisense	CAL78_BONE	0.78	1	1.5627	TRUE	0	0	0	2	0	TRUE	ACH-000516
CAL78_BONE	SIRT2--RYR1	22	23	SIRT2	8232	chr19:39379725:-	RYR1	95600	chr19:39068769:+	INCL_NON_REF_SPLICE	YES	39	0	0.54	1	0.4465	0.4668	SIRT2->chr19:39369197-39390502:-,sirtuin_2,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	CAL78_BONE	0.54	1	0.9133	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	EPRS--PCNXL2	15	5	EPRS	6868	chr1:220203728:-	PCNXL2	64352	chr1:233231609:-	ONLY_REF_SPLICE	YES	22	6	0.48	0.77	0.3044	0.1015	EPRS->chr1:220141943-220220000:-,glutamyl-prolyl-tRNA_synthetase,PCNXL2->chr1:233119181-233431459:-	CAL78_BONE	0.48	0.77	0.4059	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	KANSL1--ARL17B	12	9	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	5	2	0.81	0.91	0.2435	0.1827	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	CAL78_BONE	0.81	0.91	0.4262	TRUE	181	1564	124	196	0	FALSE	ACH-000516
CAL78_BONE	TIMM23B--LINC00843	10	7	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2029	0.1421	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAL78_BONE	1	1	0.345	TRUE	508	994	45	981	0	FALSE	ACH-000516
CAL78_BONE	PDSS1--CTC-459I6.1	9	4	PDSS1	5064	chr10:26998697:+	CTC-459I6.1	18701	chr5:80247299:-	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.1827	0.0812	PDSS1->chr10:26986588-27035727:+,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_1,CTC-459I6.1->chr5:80243516-80256726:-	CAL78_BONE	0.76	1	0.2639	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	SIRT2--RYR1	2	18	SIRT2	8230	chr19:39379727:-	RYR1	96676	chr19:39070622:+	ONLY_REF_SPLICE	YES	39	0	0.34	1	0.0406	0.3653	SIRT2->chr19:39369197-39390502:-,sirtuin_2,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	CAL78_BONE	0.34	1	0.4059	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	PRR16--CTD-2334D19.1	6	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	8	0	0.47	1	0.1218	0.0203	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	CAL78_BONE	0.47	1	0.1421	FALSE	56	216	12	147	0	FALSE	ACH-000516
CAL78_BONE	RP11-444D3.1--SOX5	5	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1015	0.1015	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CAL78_BONE	1	1	0.203	TRUE	477	1352	189	275	0	FALSE	ACH-000516
CAL78_BONE	AC010127.3--WDR33	6	0	AC010127.3	19007	chr2:167108422:+	WDR33	31110	chr2:128526575:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1218	0	AC010127.3->chr2:166813909-167158294:+,WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-	CAL78_BONE	1	1	0.1218	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	XXbac-BPG252P9.9--TUBBP2	6	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1218	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	CAL78_BONE	1	1	0.1218	TRUE	0	1	0	48	1	FALSE	ACH-000516
CAL78_BONE	TIMM23--RP11-464F9.1	5	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	45	1	0.13	0.88	0.1015	0.0406	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAL78_BONE	0.13	0.88	0.1421	TRUE	519	3926	326	965	0	FALSE	ACH-000516
CAL78_BONE	GLYR1--PPL	4	2	GLYR1	15773	chr16:4861171:-	PPL	36111	chr16:4940922:-	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.0812	0.0406	LOCAL_REARRANGEMENT:-:[35165],GLYR1->chr16:4853204-4897343:-,glyoxylate_reductase_1_homolog,PPL->chr16:4932508-5010742:-,periplakin	CAL78_BONE	0.3	1	0.1218	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	LPHN1--MT-RNR2	4	0	LPHN1	9809	chr19:14272396:-	MT-RNR2	23049	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0812	0	LPHN1->chr19:14260750-14316999:-,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL78_BONE	1	1	0.0812	FALSE	0	0	0	1	0	FALSE	ACH-000516
CAL78_BONE	POLR2E--KDM1A	4	0	POLR2E	7574	chr19:1088642:-	KDM1A	27516	chr1:23399862:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0812	0	POLR2E->chr19:1086594-1095598:-,polymerase_(RNA)_II_subunit_E,KDM1A->chr1:23345941-23410182:+,lysine_demethylase_1A	CAL78_BONE	1	1	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	C2CD3--FAM168A	3	3	C2CD3	48092	chr11:73739332:-	FAM168A	55371	chr11:73179537:-	ONLY_REF_SPLICE	YES	18	18	0.25	0.25	0.0609	0.0609	C2CD3->C2_calcium-dependent_domain_containing_3,chr11:73723763-73882255:-,FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A	CAL78_BONE	0.25	0.25	0.1218	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	XXbac-BPG252P9.9--TUBBP2	3	2	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	NO	441	0	0.01	1	0.0609	0.0406	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	CAL78_BONE	0.01	1	0.1015	FALSE	0	1	0	48	1	FALSE	ACH-000516
CAL78_BONE	COL1A1--DNMBP	3	0	COL1A1	6099	chr17:48273676:-	DNMBP	25990	chr10:101716458:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,DNMBP->chr10:101635334-101769676:-,dynamin_binding_protein	CAL78_BONE	1	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	KIF1C--OSTC	3	0	KIF1C	7655	chr17:4907897:+	OSTC	25626	chr4:109571794:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	KIF1C->chr17:4901243-4931696:+,kinesin_family_member_1C,OSTC->chr4:109571740-109588976:+,oligosaccharyltransferase_complex_subunit_(non-catalytic)	CAL78_BONE	1	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	LARP1--UTP20	3	0	LARP1	24235	chr5:154196751:+	UTP20	73231	chr12:101763507:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+,UTP20->UTP20,_small_subunit_processome_component,chr12:101673887-101780394:+	CAL78_BONE	1	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	PSMD14--MYO5C	3	0	PSMD14	3934	chr2:162175384:+	MYO5C	30176	chr15:52562057:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0609	0	PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14,MYO5C->chr15:52484519-52587995:-,myosin_VC	CAL78_BONE	1	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	SRCAP--EEF1G	3	0	SRCAP	14734	chr16:30732151:+	EEF1G	36673	chr11:62340120:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	SRCAP->Snf2-related_CREBBP_activator_protein,chr16:30709530-30755602:+,EEF1G->chr11:62327073-62342401:-,eukaryotic_translation_elongation_factor_1_gamma	CAL78_BONE	1	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	USP1--SH3D21	3	0	USP1	1806	chr1:62902773:+	SH3D21	16494	chr1:36772728:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	USP1->chr1:62901968-62917475:+,ubiquitin_specific_peptidase_1,SH3D21->SH3_domain_containing_21,chr1:36771988-36790484:+	CAL78_BONE	1	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	CHID1--KCNQ1	2	1	CHID1	14506	chr11:883200:-	KCNQ1	32848	chr11:2604665:+	ONLY_REF_SPLICE	YES	34	0	0.08	1	0.0406	0.0203	CHID1->chitinase_domain_containing_1,chr11:867357-915058:-,KCNQ1->chr11:2465914-2870339:+,potassium_voltage-gated_channel_subfamily_Q_member_1	CAL78_BONE	0.08	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	ANPEP--TPM1	2	0	ANPEP	1630	chr15:90358004:-	TPM1	25782	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	COPS5--ATP5F1	2	0	COPS5	15513	chr8:67958047:-	ATP5F1	24403	chr1:111998708:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	COPS5->COP9_signalosome_subunit_5,chr8:67955314-67996018:-,ATP5F1->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_B1,chr1:111991486-112005395:+	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	CTA-392C11.1--MSH3	2	0	CTA-392C11.1	1125	chr8:40200797:-	MSH3	35727	chr5:80168935:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	CTA-392C11.1->chr8:40156260-40200921:-,MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	CUL3--OSER1	2	0	CUL3	1450	chr2:225449661:-	OSER1	38154	chr20:42835638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3,OSER1->chr20:42825136-42839431:-,oxidative_stress_responsive_serine_rich_1	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	ERH--ATP5O	2	0	ERH	1397	chr14:69864948:-	ATP5O	15484	chr21:35276325:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	ERH->chr14:69846848-69865344:-,enhancer_of_rudimentary_homolog_(Drosophila),ATP5O->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_O_subunit,chr21:35275757-35288284:-	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	FAF1--UEVLD	2	0	FAF1	9453	chr1:51121114:-	UEVLD	35506	chr11:18591924:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,UEVLD->UEV_and_lactate/malate_dehyrogenase_domains,chr11:18551156-18610294:-	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	FAM126A--TSC1	2	0	FAM126A	2285	chr7:23030680:-	TSC1	30826	chr9:135787844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	FAM126A->chr7:22980878-23053749:-,family_with_sequence_similarity_126_member_A,TSC1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:135766735-135820020:-,tuberous_sclerosis_1	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	GPD2--PSMD14	2	0	GPD2	2224	chr2:157293025:+	PSMD14	45786	chr2:162265348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	GPD2->chr2:157291802-157470247:+,glycerol-3-phosphate_dehydrogenase_2,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	LAMB1--IMMP2L	2	0	LAMB1	21656	chr7:107591671:-	IMMP2L	51531	chr7:110303777:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	LAMB1->chr7:107564244-107643700:-,laminin_subunit_beta_1,IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	MAPK8--HNRNPF	2	0	MAPK8	1167	chr10:49514864:+	HNRNPF	29204	chr10:43883384:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	MAPK8->Oncogene{Bushman},chr10:49514698-49647403:+,mitogen-activated_protein_kinase_8,HNRNPF->chr10:43881065-43904614:-,heterogeneous_nuclear_ribonucleoprotein_F	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	MED15--PRKAR1A	2	0	MED15	3426	chr22:20862033:+	PRKAR1A	32219	chr17:66511535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	MED15->chr22:20850200-20941919:+,mediator_complex_subunit_15,PRKAR1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:66507921-66547460:+,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_alpha	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	MKLN1-AS1--CARKD	2	0	MKLN1-AS1	13605	chr7:130630479:-	CARKD	20504	chr13:111274563:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	MKLN1-AS1->chr7:130626519-130794935:-,CARKD->chr13:111267881-111292340:+	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	MTMR10--GALNT1	2	0	MTMR10	1831	chr15:31282980:-	GALNT1	28901	chr18:33234524:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	MTMR10->chr15:31231144-31283810:-,myotubularin_related_protein_10,GALNT1->chr18:33161081-33291798:+,polypeptide_N-acetylgalactosaminyltransferase_1	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	NR2C1--METAP2	2	0	NR2C1	10531	chr12:95442844:-	METAP2	31036	chr12:95887832:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	NR2C1->chr12:95414005-95467479:-,nuclear_receptor_subfamily_2_group_C_member_1,METAP2->Oncogene{Bushman},chr12:95867296-95909615:+,methionyl_aminopeptidase_2	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	NRIP1--CLK3	2	0	NRIP1	3459	chr21:16386665:-	CLK3	29823	chr15:74914835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,CLK3->CDC_like_kinase_3,chr15:74890841-74932057:+	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	PCMTD1--POLR2B	2	0	PCMTD1	1246	chr8:52811490:-	POLR2B	23685	chr4:57852520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,POLR2B->chr4:57843888-57897334:+,polymerase_(RNA)_II_subunit_B	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	PPARA--TBX15	2	0	PPARA	9304	chr22:46594488:+	TBX15	29971	chr1:119474455:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	PPARA->chr22:46546424-46639653:+,peroxisome_proliferator_activated_receptor_alpha,TBX15->T-box_15,chr1:119425669-119532179:-	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	PRDM6--CXXC5	2	0	PRDM6	2486	chr5:122426301:+	CXXC5	28815	chr5:139059949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	PRDM6->PR_domain_6,chr5:122424816-122529960:+,CXXC5->CXXC_finger_protein_5,chr5:139026884-139063467:+	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	RAP1GDS1--PDZRN3-AS1	2	0	RAP1GDS1	5677	chr4:99273752:+	PDZRN3-AS1	28380	chr3:73674563:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+,PDZRN3-AS1->PDZRN3_antisense_RNA_1,chr3:73670864-73675149:+	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	RCC1--IFRD1	2	0	RCC1	2175	chr1:28834672:+	IFRD1	30859	chr7:112101921:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,IFRD1->chr7:112063023-112121072:+,interferon_related_developmental_regulator_1	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	SAFB--PLIN3	2	0	SAFB	2445	chr19:5626500:+	PLIN3	30410	chr19:4839548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	SAFB->chr19:5623046-5668489:+,scaffold_attachment_factor_B,PLIN3->chr19:4838353-4867780:-,perilipin_3	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	STXBP5--NOLC1	2	0	STXBP5	4539	chr6:147560406:+	NOLC1	39644	chr10:103918950:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,NOLC1->chr10:103911933-103923627:+,nucleolar_and_coiled-body_phosphoprotein_1	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	TRAF3--NRXN3	2	0	TRAF3	1200	chr14:103244012:+	NRXN3	59940	chr14:80130121:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	TRAF3->Oncogene{Bushman},TNF_receptor_associated_factor_3,chr14:103243813-103377837:+,NRXN3->chr14:78708734-80330762:+,neurexin_3	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	TSEN15--USP47	2	0	TSEN15	2296	chr1:184023569:+	USP47	35325	chr11:11969492:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	TSEN15->chr1:184020811-184043346:+,tRNA_splicing_endonuclease_subunit_15,USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	TUBB--SH3BP4	2	0	TUBB	1363	chr6:30688340:+	SH3BP4	16586	chr2:235903947:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I,SH3BP4->SH3_domain_binding_protein_4,chr2:235860617-235964358:+	CAL78_BONE	1	1	0.0406	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	B3GAT2--DLEU1	1	3	B3GAT2	2200	chr6:71665542:-	DLEU1	32652	chr13:50964334:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0203	0.0609	B3GAT2->beta-1,3-glucuronyltransferase_2,chr6:71566382-71666741:-,DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding)	CAL78_BONE	1	1	0.0812	TRUE	0	0	0	1	0	TRUE	ACH-000516
CAL78_BONE	GLYR1--PPL	1	2	GLYR1	15773	chr16:4861171:-	PPL	36698	chr16:4940335:-	ONLY_REF_SPLICE	YES	14	1	0.18	0.75	0.0203	0.0406	LOCAL_REARRANGEMENT:-:[35165],GLYR1->chr16:4853204-4897343:-,glyoxylate_reductase_1_homolog,PPL->chr16:4932508-5010742:-,periplakin	CAL78_BONE	0.18	0.75	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000516
NCIH1666_LUNG	TIMM23B--LINC00843	79	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.9865	0.4246	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1666_LUNG	0.98	1	1.4111	TRUE	508	994	45	981	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-TA--MT-TC	83	17	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0364	0.2123	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1666_LUNG	1	1	1.2487	FALSE	462	80	0	856	0	FALSE	ACH-000448
NCIH1666_LUNG	MAP3K4--C6orf118	41	14	MAP3K4	1357	chr6:161413115:+	C6orf118	45098	chr6:165703556:-	ONLY_REF_SPLICE	YES	12	0	0.82	1	0.512	0.1748	MAP3K4->chr6:161412759-161538417:+,mitogen-activated_protein_kinase_kinase_kinase_4,C6orf118->chr6:165693153-165723096:-,chromosome_6_open_reading_frame_118	NCIH1666_LUNG	0.82	1	0.6868	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	TIMM23--RP11-464F9.1	42	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	255	2	0.15	0.96	0.5244	0.0375	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1666_LUNG	0.15	0.96	0.5619	TRUE	519	3926	326	965	0	FALSE	ACH-000448
NCIH1666_LUNG	SLC25A3--ANKS1B	35	27	SLC25A3	1545	chr12:98987913:+	ANKS1B	32729	chr12:99640642:-	ONLY_REF_SPLICE	YES	1054	0	0.06	1	0.437	0.3371	SLC25A3->chr12:98987369-98995946:+,solute_carrier_family_25_member_3,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	NCIH1666_LUNG	0.06	1	0.7741	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	KANSL1--ARL17B	27	23	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	33	62	0.6	0.45	0.3371	0.2872	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH1666_LUNG	0.45	0.6	0.6243	TRUE	181	1564	124	196	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-ATP6--MT-CO1	26	0	MT-ATP6	1018	chrM:8544:+	MT-CO1	5856	chrM:7078:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3247	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1666_LUNG	1	1	0.3247	FALSE	183	104	9	328	0	FALSE	ACH-000448
NCIH1666_LUNG	MED29--FREM2	20	7	MED29	3335	chr19:39884277:+	FREM2	41431	chr13:39454421:+	ONLY_REF_SPLICE	YES	77	0	0.26	1	0.2497	0.0874	MED29->chr19:39881943-39891277:+,mediator_complex_subunit_29,FREM2->FRAS1_related_extracellular_matrix_protein_2,chr13:39261266-39460074:+	NCIH1666_LUNG	0.26	1	0.3371	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	NRIP1--AF127936.7	19	6	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	19	3	0.57	0.89	0.2372	0.0749	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1666_LUNG	0.57	0.89	0.3121	FALSE	292	1546	117	613	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-ND4--MT-ATP6	20	1	MT-ND4	1477	chrM:11236:+	MT-ATP6	5883	chrM:9031:+	INCL_NON_REF_SPLICE	YES	16844	8771	0	0	0.2497	0.0125	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1666_LUNG	0	0	0.2622	FALSE	21	137	19	8	0	FALSE	ACH-000448
NCIH1666_LUNG	TMC6--TK1	17	6	TMC6	3942	chr17:76124693:-	TK1	26873	chr17:76171699:-	ONLY_REF_SPLICE	YES	10	281	0.7	0.08	0.2123	0.0749	LOCAL_REARRANGEMENT:-:[41672],TMC6->chr17:76106539-76128488:-,transmembrane_channel_like_6,TK1->Oncogene{Bushman},chr17:76170160-76183314:-,thymidine_kinase_1	NCIH1666_LUNG	0.08	0.7	0.2872	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	MT-TA--MT-TC	14	16	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1748	0.1998	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1666_LUNG	1	1	0.3746	FALSE	462	80	0	856	0	FALSE	ACH-000448
NCIH1666_LUNG	OR51S1--TP53I11	18	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2248	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH1666_LUNG	1	1	0.2248	TRUE	402	216	10	229	0	FALSE	ACH-000448
NCIH1666_LUNG	IGF2R--EPM2A	16	3	IGF2R	1297	chr6:160390427:+	EPM2A	56523	chr6:146007432:-	ONLY_REF_SPLICE	YES	5	0	0.79	1	0.1998	0.0375	IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor,EPM2A->chr6:145822719-146057160:-,epilepsy,_progressive_myoclonus_type_2A,_Lafora_disease_(laforin)	NCIH1666_LUNG	0.79	1	0.2373	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	MT-TA--MT-TC	11	23	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1374	0.2872	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1666_LUNG	1	1	0.4246	FALSE	462	80	0	856	0	FALSE	ACH-000448
NCIH1666_LUNG	IGF2R--RP3-466P17.2	15	1	IGF2R	1297	chr6:160390427:+	RP3-466P17.2	54072	chr6:146058307:-	INCL_NON_REF_SPLICE	YES	5	0	0.76	1	0.1873	0.0125	IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor,RP3-466P17.2->chr6:146058047-146058309:-	NCIH1666_LUNG	0.76	1	0.1998	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	LDLR--FXYD3	13	9	LDLR	1254	chr19:11200291:+	FXYD3	33790	chr19:35613669:+	ONLY_REF_SPLICE	YES	57	3098	0.28	0.01	0.1623	0.1124	LDLR->chr19:11200038-11244492:+,low_density_lipoprotein_receptor,FXYD3->FXYD_domain_containing_ion_transport_regulator_3,chr19:35606732-35615228:+	NCIH1666_LUNG	0.01	0.28	0.2747	TRUE	0	0	0	1	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-ND6--MT-TE	15	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1873	0.0125	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1666_LUNG	1	1	0.1998	FALSE	499	1288	110	792	0	FALSE	ACH-000448
NCIH1666_LUNG	PRDM15--CRYZL1	13	7	PRDM15	22683	chr21:43242259:-	CRYZL1	47978	chr21:35003863:-	ONLY_REF_SPLICE	YES	4	0	0.83	1	0.1623	0.0874	PRDM15->PR_domain_15,chr21:43218385-43299591:-,CRYZL1->chr21:34961647-35016232:-,crystallin_zeta_like_1	NCIH1666_LUNG	0.83	1	0.2497	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	MT-CO3--MT-ATP6	5	34	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	6	2	0.87	0.95	0.0624	0.4246	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1666_LUNG	0.87	0.95	0.487	FALSE	189	492	56	216	0	FALSE	ACH-000448
NCIH1666_LUNG	NRIP1--AF127936.7	10	13	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	59	3	0.28	0.88	0.1249	0.1623	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1666_LUNG	0.28	0.88	0.2872	FALSE	125	705	46	456	0	FALSE	ACH-000448
NCIH1666_LUNG	RP11-123O10.4--GRIP1	12	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1498	0.0624	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1666_LUNG	1	1	0.2122	FALSE	416	2512	207	587	0	FALSE	ACH-000448
NCIH1666_LUNG	NIPA2--POLA1	13	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1623	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	NCIH1666_LUNG	1	1	0.1623	TRUE	46	1352	75	139	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-CO3--MT-ATP6	3	38	MT-CO3	1205	chrM:9411:+	MT-ATP6	5179	chrM:8921:+	INCL_NON_REF_SPLICE	YES	6	30	0.87	0.58	0.0375	0.4745	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1666_LUNG	0.58	0.87	0.512	FALSE	189	492	56	216	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-CO3--MT-ATP6	11	4	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1374	0.0499	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1666_LUNG	0.94	1	0.1873	FALSE	189	492	56	216	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-ND5--MT-ATP8	12	0	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1498	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1666_LUNG	1	1	0.1498	FALSE	43	37	8	105	0	FALSE	ACH-000448
NCIH1666_LUNG	NRIP1--AF127936.7	7	18	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	80	3	0.24	0.89	0.0874	0.2248	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1666_LUNG	0.24	0.89	0.3122	FALSE	164	806	69	479	0	FALSE	ACH-000448
NCIH1666_LUNG	RP11-96H19.1--RP11-446N19.1	9	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.1124	0.0874	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1666_LUNG	0.94	1	0.1998	FALSE	515	4851	409	746	0	FALSE	ACH-000448
NCIH1666_LUNG	MAP7--IGF2R	10	0	MAP7	1478	chr6:136871480:-	IGF2R	26465	chr6:160412216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1249	0	MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7,IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor	NCIH1666_LUNG	1	1	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	MT-ND6--MT-TE	9	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1124	0.0499	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1666_LUNG	1	1	0.1623	FALSE	499	1288	110	792	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-CO3--MT-ATP6	9	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.79	1	0.1124	0.025	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1666_LUNG	0.79	1	0.1374	FALSE	189	492	56	216	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-ATP6--MT-CO1	8	4	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9697	26986	0	0	0.0999	0.0499	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1666_LUNG	0	0	0.1498	FALSE	183	104	9	328	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-CO3--MT-ATP6	8	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.0999	0.0499	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1666_LUNG	0.86	1	0.1498	FALSE	189	492	56	216	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-CO3--MT-ATP6	4	20	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	1	2	0.96	0.92	0.0499	0.2497	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1666_LUNG	0.92	0.96	0.2996	FALSE	189	492	56	216	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-CO3--MT-ATP6	3	23	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	26	0.96	0.5	0.0375	0.2872	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1666_LUNG	0.5	0.96	0.3247	FALSE	189	492	56	216	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-TA--MT-TC	4	19	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0.2372	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1666_LUNG	1	1	0.2871	FALSE	462	80	0	856	0	FALSE	ACH-000448
NCIH1666_LUNG	ARID1B--AL590867.1	8	0	ARID1B	9571	chr6:157406039:+	AL590867.1	42490	chr6:153667581:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0999	0	ARID1B->AT-rich_interaction_domain_1B,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:157099063-157531913:+,AL590867.1->chr6:153552455-153668623:+	NCIH1666_LUNG	1	1	0.0999	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	MT-ND5--MT-ATP8	8	0	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0999	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1666_LUNG	1	1	0.0999	FALSE	43	37	8	105	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-TA--MT-TC	6	8	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0749	0.0999	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1666_LUNG	1	1	0.1748	FALSE	462	80	0	856	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0999	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1666_LUNG	1	1	0.0999	FALSE	462	80	0	856	0	FALSE	ACH-000448
NCIH1666_LUNG	MAP3K4--C6orf118	7	3	MAP3K4	1357	chr6:161413115:+	C6orf118	46609	chr6:165695182:-	ONLY_REF_SPLICE	YES	12	20	0.45	0.33	0.0874	0.0375	MAP3K4->chr6:161412759-161538417:+,mitogen-activated_protein_kinase_kinase_kinase_4,C6orf118->chr6:165693153-165723096:-,chromosome_6_open_reading_frame_118	NCIH1666_LUNG	0.33	0.45	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	MT-CO3--MT-ATP6	3	19	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.92	0.0375	0.2372	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1666_LUNG	0.92	1	0.2747	FALSE	189	492	56	216	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-ND4--MT-ATP6	7	1	MT-ND4	1209	chrM:10968:+	MT-ATP6	5317	chrM:8465:+	INCL_NON_REF_SPLICE	NO	12961	0	0	1	0.0874	0.0125	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1666_LUNG	0	1	0.0999	FALSE	21	91	18	8	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-ND4--MT-ATP6	4	13	MT-ND4	1818	chrM:11577:+	MT-ATP6	5537	chrM:8685:+	INCL_NON_REF_SPLICE	YES	15312	5344	0	0	0.0499	0.1623	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1666_LUNG	0	0	0.2122	FALSE	21	137	19	8	0	FALSE	ACH-000448
NCIH1666_LUNG	EIF1--RPS28	7	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0874	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH1666_LUNG	1	1	0.0874	TRUE	0	0	0	81	0	FALSE	ACH-000448
NCIH1666_LUNG	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2646	0	0	1	0.0749	0.0125	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1666_LUNG	0	1	0.0874	FALSE	13	9	0	364	0	FALSE	ACH-000448
NCIH1666_LUNG	RP11-96H19.1--RP11-446N19.1	4	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0499	0.0999	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1666_LUNG	1	1	0.1498	FALSE	407	2205	196	549	0	FALSE	ACH-000448
NCIH1666_LUNG	RP11-680G10.1--GSE1	5	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.41	0.0624	0.025	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1666_LUNG	0.41	1	0.0874	TRUE	458	1351	185	561	0	FALSE	ACH-000448
NCIH1666_LUNG	HSP90AB1--MT-RNR2	5	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2632	0	0	1	0.0624	0.0125	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1666_LUNG	0	1	0.0749	FALSE	13	9	0	364	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-ND4--MT-ATP6	5	1	MT-ND4	1258	chrM:11017:+	MT-ATP6	5371	chrM:8519:+	INCL_NON_REF_SPLICE	YES	13624	0	0	1	0.0624	0.0125	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1666_LUNG	0	1	0.0749	FALSE	21	93	18	8	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-ND4--MT-ATP6	3	9	MT-ND4	1546	chrM:11305:+	MT-ATP6	5337	chrM:8485:+	INCL_NON_REF_SPLICE	YES	18241	0	0	1	0.0375	0.1124	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1666_LUNG	0	1	0.1499	FALSE	21	137	19	8	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-CO3--MT-ATP6	4	4	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0.0499	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1666_LUNG	1	1	0.0998	FALSE	189	492	56	216	0	FALSE	ACH-000448
NCIH1666_LUNG	RBL1--TMPRSS15	4	4	RBL1	14322	chr20:35668556:-	TMPRSS15	32585	chr21:19770646:-	ONLY_REF_SPLICE	YES	20	1	0.29	0.89	0.0499	0.0499	RBL1->Oncogene{Bushman},chr20:35624752-35724398:-,chr20:35724188-35725581:+,retinoblastoma-like_1,TMPRSS15->chr21:19641433-19858197:-,transmembrane_protease,_serine_15	NCIH1666_LUNG	0.29	0.89	0.0998	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	RP11-96H19.1--RP11-446N19.1	3	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0375	0.0999	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1666_LUNG	0.92	1	0.1374	FALSE	467	2173	244	435	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-ND6--MT-TE	4	3	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0.0375	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1666_LUNG	1	1	0.0874	FALSE	499	1288	110	792	0	FALSE	ACH-000448
NCIH1666_LUNG	BMP2K--CNGA1	4	2	BMP2K	18691	chr4:79808438:+	CNGA1	30701	chr4:48012910:-	ONLY_REF_SPLICE	YES	3	6	0.67	0.5	0.0499	0.025	BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+,CNGA1->chr4:47937994-48018689:-,cyclic_nucleotide_gated_channel_alpha_1	NCIH1666_LUNG	0.5	0.67	0.0749	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	ANK3--RP11-417J8.1	3	4	ANK3	45695	chr10:61840295:-	RP11-417J8.1	75703	chr1:142557333:+	ONLY_REF_SPLICE	YES	22	0	0.24	1	0.0375	0.0499	ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-,RP11-417J8.1->chr1:142553293-142559170:+	NCIH1666_LUNG	0.24	1	0.0874	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	MT-CO3--MT-ATP6	3	4	MT-CO3	1131	chrM:9337:+	MT-ATP6	5429	chrM:9171:+	INCL_NON_REF_SPLICE	NO	2	0	0.78	1	0.0375	0.0499	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1666_LUNG	0.78	1	0.0874	FALSE	189	492	56	216	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-ND5--MT-ATP8	4	0	MT-ND5	1570	chrM:12906:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1666_LUNG	1	1	0.0499	FALSE	42	36	7	104	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-ND6--MT-TE	3	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0.0499	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1666_LUNG	1	1	0.0874	FALSE	499	1288	110	792	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-ND6--MT-TE	3	4	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0375	0.0499	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1666_LUNG	0.88	1	0.0874	FALSE	499	1288	110	792	0	FALSE	ACH-000448
NCIH1666_LUNG	NPM1P24--SET	4	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1666_LUNG	1	1	0.0499	TRUE	0	0	0	434	0	FALSE	ACH-000448
NCIH1666_LUNG	RP11-114H23.1--RP11-114H23.2	3	4	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0375	0.0499	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH1666_LUNG	1	1	0.0874	FALSE	81	155	12	160	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-CO3--MT-ATP6	3	3	MT-CO3	1211	chrM:9417:+	MT-ATP6	5458	chrM:9200:+	INCL_NON_REF_SPLICE	YES	6	0	0.5	1	0.0375	0.0375	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1666_LUNG	0.5	1	0.075	FALSE	189	492	56	216	0	FALSE	ACH-000448
NCIH1666_LUNG	TMC6--TK1	3	2	TMC6	3895	chr17:76124740:-	TK1	26873	chr17:76171699:-	ONLY_REF_SPLICE	YES	2	281	0.71	0.02	0.0375	0.025	LOCAL_REARRANGEMENT:-:[41672],TMC6->chr17:76106539-76128488:-,transmembrane_channel_like_6,TK1->Oncogene{Bushman},chr17:76170160-76183314:-,thymidine_kinase_1	NCIH1666_LUNG	0.02	0.71	0.0625	TRUE	0	0	0	1	0	FALSE	ACH-000448
NCIH1666_LUNG	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	19	23	0.17	0.15	0.0375	0.0125	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1666_LUNG	0.15	0.17	0.05	FALSE	25	145	6	90	0	FALSE	ACH-000448
NCIH1666_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0375	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1666_LUNG	1	1	0.0375	FALSE	499	1288	110	792	0	FALSE	ACH-000448
NCIH1666_LUNG	RP11-120D5.1--MID1	3	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0375	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1666_LUNG	1	1	0.0375	FALSE	16	356	14	466	0	FALSE	ACH-000448
NCIH1666_LUNG	KANSL1--ARL17B	1	7	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	NO	41	62	0.16	0.11	0.0125	0.0874	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH1666_LUNG	0.11	0.16	0.0999	TRUE	105	90	7	93	0	FALSE	ACH-000448
NCIH1666_LUNG	PVT1--SNTB1	2	2	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	NO	79	1	0.05	0.8	0.025	0.025	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	NCIH1666_LUNG	0.05	0.8	0.05	TRUE	0	0	0	25	0	FALSE	ACH-000448
NCIH1666_LUNG	NRIP1--AF127936.7	1	5	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	80	23	0.07	0.21	0.0125	0.0624	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1666_LUNG	0.07	0.21	0.0749	FALSE	8	57	1	47	0	FALSE	ACH-000448
NCIH1666_LUNG	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	14	1	0.18	0.025	0.0125	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1666_LUNG	0.18	1	0.0375	TRUE	465	1949	224	605	0	FALSE	ACH-000448
NCIH1666_LUNG	ACTN4--AC016582.2	2	0	ACTN4	1259	chr19:39138547:+	AC016582.2	28792	chr19:38327655:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,AC016582.2->chr19:38314362-38345855:-	NCIH1666_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	AP4B1--PPFIA1	2	0	AP4B1	1597	chr1:114447227:-	PPFIA1	15186	chr11:70118279:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	AP4B1->adaptor_related_protein_complex_4_beta_1_subunit,chr1:114437370-114447823:-,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	NCIH1666_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	C2orf69--UBC	2	0	C2orf69	1516	chr2:200776494:+	UBC	13024	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	C2orf69->chr2:200775979-200820658:+,chromosome_2_open_reading_frame_69,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH1666_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	47891	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	NCIH1666_LUNG	1	1	0.025	TRUE	1	3	0	10	0	FALSE	ACH-000448
NCIH1666_LUNG	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	NCIH1666_LUNG	1	1	0.025	TRUE	2	8	0	24	0	FALSE	ACH-000448
NCIH1666_LUNG	EPCAM--MSH6	2	0	EPCAM	2720	chr2:47596720:+	MSH6	25286	chr2:48023033:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	EPCAM->Oncogene{Bushman},chr2:47572297-47614740:+,epithelial_cell_adhesion_molecule,MSH6->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47922669-48037240:+,mutS_homolog_6	NCIH1666_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	GEMIN6--DHX57	2	0	GEMIN6	4383	chr2:39006260:+	DHX57	38088	chr2:39033835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	LOCAL_INVERSION:+:-:[12729],GEMIN6->chr2:38978676-39012142:+,gem_nuclear_organelle_associated_protein_6,DHX57->DEAH-box_helicase_57,chr2:39024871-39103075:-	NCIH1666_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	MRPL15--CNST	2	0	MRPL15	3108	chr8:55049993:+	CNST	20001	chr1:246829002:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	MRPL15->chr8:55047770-55060461:+,mitochondrial_ribosomal_protein_L15,CNST->chr1:246729746-246831886:+,consortin,_connexin_sorting_protein	NCIH1666_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	SLX4IP--SNAP25	2	0	SLX4IP	2207	chr20:10438879:+	SNAP25	15326	chr20:10256077:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.025	0	SLX4IP->SLX4_interacting_protein,chr20:10415951-10617477:+,SNAP25->chr20:10199478-10288066:+,synaptosome_associated_protein_25kDa	NCIH1666_LUNG	1	1	0.025	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	MED29--FREM2	1	2	MED29	1336	chr19:39882278:+	FREM2	41431	chr13:39454421:+	ONLY_REF_SPLICE	NO	60	0	0.05	1	0.0125	0.025	MED29->chr19:39881943-39891277:+,mediator_complex_subunit_29,FREM2->FRAS1_related_extracellular_matrix_protein_2,chr13:39261266-39460074:+	NCIH1666_LUNG	0.05	1	0.0375	TRUE	0	0	0	1	0	TRUE	ACH-000448
NCIH1666_LUNG	MOB1A--SLC4A5	1	2	MOB1A	3123	chr2:74399713:-	SLC4A5	47596	chr2:74452122:-	ONLY_REF_SPLICE	YES	251	1	0.01	0.75	0.0125	0.025	LOCAL_REARRANGEMENT:-:[37344],MOB1A->MOB_kinase_activator_1A,chr2:74379655-74406025:-,SLC4A5->chr2:74443369-74570541:-,solute_carrier_family_4_member_5	NCIH1666_LUNG	0.01	0.75	0.0375	FALSE	0	0	0	1	0	FALSE	ACH-000448
NCIH1666_LUNG	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	17	120	0.11	0.02	0.0125	0.0125	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	NCIH1666_LUNG	0.02	0.11	0.025	FALSE	118	557	29	88	0	FALSE	ACH-000448
NCIH1666_LUNG	FAM60A--GNAS	1	1	FAM60A	2035	chr12:31478958:-	GNAS	34764	chr20:57470667:+	ONLY_REF_SPLICE	YES	84	914	0.02	0	0.0125	0.0125	FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1666_LUNG	0	0.02	0.025	FALSE	0	0	0	2	0	FALSE	ACH-000448
NCIH1666_LUNG	NCOR2--UBC	1	1	NCOR2	3484	chr12:125002686:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	7	44	0.22	0.04	0.0125	0.0125	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH1666_LUNG	0.04	0.22	0.025	TRUE	7	26	3	12	0	FALSE	ACH-000448
NCIH1666_LUNG	NUDCD1--TBC1D31	1	1	NUDCD1	13056	chr8:110257551:-	TBC1D31	27684	chr8:124105831:+	ONLY_REF_SPLICE	YES	94	20	0.02	0.09	0.0125	0.0125	NUDCD1->NudC_domain_containing_1,chr8:110253148-110346614:-,TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+	NCIH1666_LUNG	0.02	0.09	0.025	TRUE	0	0	0	1	0	FALSE	ACH-000448
NCIH1666_LUNG	PPP4R1--VAPA	1	1	PPP4R1	2015	chr18:9614224:-	VAPA	33688	chr18:9931807:+	ONLY_REF_SPLICE	NO	124	596	0.02	0	0.0125	0.0125	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	NCIH1666_LUNG	0	0.02	0.025	FALSE	0	1	0	3	0	FALSE	ACH-000448
NCIH1666_LUNG	PPP4R1--VAPA	1	1	PPP4R1	2714	chr18:9613525:-	VAPA	40734	chr18:9950392:+	ONLY_REF_SPLICE	YES	177	618	0.01	0	0.0125	0.0125	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+	NCIH1666_LUNG	0	0.01	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000448
NCIH1666_LUNG	RAB31--PPP4R1	1	1	RAB31	11081	chr18:9815219:+	PPP4R1	27769	chr18:9595100:-	ONLY_REF_SPLICE	YES	796	178	0	0.01	0.0125	0.0125	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},LOCAL_INVERSION:+:-:[92924],RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1	NCIH1666_LUNG	0	0.01	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000448
NCIH1666_LUNG	RLF--MYCL	1	1	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	29	9	0.06	0.18	0.0125	0.0125	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	NCIH1666_LUNG	0.06	0.18	0.025	TRUE	0	0	0	10	0	TRUE	ACH-000448
NCIH1666_LUNG	RP11-155G15.2--RP11-1E3.1	1	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0125	0.0125	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH1666_LUNG	1	1	0.025	FALSE	46	201	11	112	0	FALSE	ACH-000448
NCIH1666_LUNG	SLC25A3--ANKS1B	1	1	SLC25A3	1545	chr12:98987913:+	ANKS1B	36087	chr12:99548173:-	ONLY_REF_SPLICE	YES	1054	44	0	0.04	0.0125	0.0125	SLC25A3->chr12:98987369-98995946:+,solute_carrier_family_25_member_3,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	NCIH1666_LUNG	0	0.04	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000448
NCIH1666_LUNG	SLC25A3--ANKS1B	1	1	SLC25A3	1545	chr12:98987913:+	ANKS1B	45880	chr12:99225914:-	ONLY_REF_SPLICE	NO	1054	23	0	0.08	0.0125	0.0125	SLC25A3->chr12:98987369-98995946:+,solute_carrier_family_25_member_3,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	NCIH1666_LUNG	0	0.08	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000448
A172_CENTRAL_NERVOUS_SYSTEM	CNOT1--AC008731.1	344	64	CNOT1	1159	chr16:58663632:-	AC008731.1	52332	chr16:24931581:-	INCL_NON_REF_SPLICE	YES	18	3	0.96	0.99	4.2774	0.7958	CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,AC008731.1->chr16:24930714-24932325:-	A172_CENTRAL_NERVOUS_SYSTEM	0.96	0.99	5.0732	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	SNTB2--IL34	119	59	SNTB2	5129	chr16:69294163:+	IL34	25032	chr16:70690505:+	ONLY_REF_SPLICE	YES	21	2	0.89	0.99	1.4797	0.7336	{Klijn_CCL:Brain=1},SNTB2->chr16:69221032-69342955:+,syntrophin_beta_2,IL34->chr16:70613798-70694585:+,interleukin_34	A172_CENTRAL_NERVOUS_SYSTEM	0.89	0.99	2.2133	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	SETX--TNRC6A	69	24	SETX	14146	chr9:135201711:-	TNRC6A	53789	chr16:24808811:+	ONLY_REF_SPLICE	YES	26	41	0.78	0.69	0.858	0.2984	{Klijn_CCL:Brain=1},SETX->chr9:135136743-135230372:-,senataxin,TNRC6A->chr16:24741016-24838953:+,trinucleotide_repeat_containing_6A	A172_CENTRAL_NERVOUS_SYSTEM	0.69	0.78	1.1564	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PAFAH1B1--COX10-AS1	51	31	PAFAH1B1	14978	chr17:2579900:+	COX10-AS1	35992	chr17:13694350:-	INCL_NON_REF_SPLICE	YES	151	3	0.35	0.96	0.6342	0.3855	PAFAH1B1->chr17:2496504-2588909:+,platelet_activating_factor_acetylhydrolase_1b_regulatory_subunit_1,COX10-AS1->COX10_antisense_RNA_1,chr17:13659795-13972812:-	A172_CENTRAL_NERVOUS_SYSTEM	0.35	0.96	1.0197	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CTB-31N19.2--RANBP10	50	24	CTB-31N19.2	2725	chr16:21558722:-	RANBP10	15693	chr16:67771938:-	ONLY_REF_SPLICE	YES	0	21	1	0.78	0.6217	0.2984	CTB-31N19.2->chr16:21544266-21561694:-,RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-	A172_CENTRAL_NERVOUS_SYSTEM	0.78	1	0.9201	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	ABL1--GINS3	49	26	ABL1	1510	chr9:133589842:+	GINS3	24698	chr16:58420525:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.6093	0.3233	ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.9326	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	C16orf52--PALB2	53	8	C16orf52	1770	chr16:22019728:+	PALB2	29524	chr16:23619333:-	ONLY_REF_SPLICE	YES	3	26	0.95	0.7	0.659	0.0995	C16orf52->chr16:22018959-22098855:+,chromosome_16_open_reading_frame_52,PALB2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:23614488-23652631:-,partner_and_localizer_of_BRCA2	A172_CENTRAL_NERVOUS_SYSTEM	0.7	0.95	0.7585	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	49	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.97	0.6093	0.2736	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	A172_CENTRAL_NERVOUS_SYSTEM	0.97	1	0.8829	TRUE	508	994	45	981	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	42	39	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	9	2	0.9	0.98	0.5222	0.4849	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	A172_CENTRAL_NERVOUS_SYSTEM	0.9	0.98	1.0071	TRUE	0	48	0	65	48	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	NFAT5--IQCE	44	29	NFAT5	2281	chr16:69600277:+	IQCE	55997	chr7:2641075:+	ONLY_REF_SPLICE	YES	10	57	0.88	0.56	0.5471	0.3606	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+	A172_CENTRAL_NERVOUS_SYSTEM	0.56	0.88	0.9077	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CTD-2547E10.2--CTB-31N19.2	31	21	CTD-2547E10.2	1617	chr16:21531149:-	CTB-31N19.2	32575	chr16:21561694:-	ONLY_REF_SPLICE	YES	5	0	0.91	1	0.3855	0.2611	LOCAL_REARRANGEMENT:-:[12501],CTD-2547E10.2->chr16:21458004-21531765:-,CTB-31N19.2->chr16:21544266-21561694:-	A172_CENTRAL_NERVOUS_SYSTEM	0.91	1	0.6466	TRUE	0	0	0	2	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CBFB--FUK	28	16	CBFB	3391	chr16:67070658:+	FUK	17088	chr16:70497072:+	ONLY_REF_SPLICE	YES	159	2	0.22	0.96	0.3482	0.199	{Klijn_CCL:Brain=1},CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,FUK->chr16:70488324-70514177:+,fucokinase	A172_CENTRAL_NERVOUS_SYSTEM	0.22	0.96	0.5472	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	31	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	264	2	0.11	0.94	0.3855	0.0373	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	A172_CENTRAL_NERVOUS_SYSTEM	0.11	0.94	0.4228	TRUE	519	3926	326	965	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	29	9	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3606	0.1119	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.4725	TRUE	0	3	0	38	3	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	ABL1--CBFB	26	14	ABL1	12120	chr9:133756051:+	CBFB	23219	chr16:67100585:+	ONLY_REF_SPLICE	YES	15	181	0.73	0.18	0.3233	0.1741	ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit	A172_CENTRAL_NERVOUS_SYSTEM	0.18	0.73	0.4974	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	DBF4B--NMT1	26	14	DBF4B	1759	chr17:42786734:+	NMT1	21628	chr17:43138651:+	ONLY_REF_SPLICE	YES	48	0	0.45	1	0.3233	0.1741	DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+,NMT1->N-myristoyltransferase_1,Oncogene{Bushman},chr17:43128978-43186384:+	A172_CENTRAL_NERVOUS_SYSTEM	0.45	1	0.4974	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	NFAT5--IQCE	20	35	NFAT5	3335	chr16:69602451:+	IQCE	55997	chr7:2641075:+	ONLY_REF_SPLICE	YES	12	57	0.82	0.49	0.2487	0.4352	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+	A172_CENTRAL_NERVOUS_SYSTEM	0.49	0.82	0.6839	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CNOT1--AC008731.1	9	73	CNOT1	2301	chr16:58658557:-	AC008731.1	52332	chr16:24931581:-	INCL_NON_REF_SPLICE	YES	53	3	0.61	0.96	0.1119	0.9077	CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,AC008731.1->chr16:24930714-24932325:-	A172_CENTRAL_NERVOUS_SYSTEM	0.61	0.96	1.0196	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	USB1--SLC6A2	22	17	USB1	3411	chr16:58036549:+	SLC6A2	19544	chr16:55690556:+	ONLY_REF_SPLICE	YES	100	0	0.28	1	0.2736	0.2114	USB1->U6_snRNA_biogenesis_phosphodiesterase_1,chr16:58033450-58055522:+,SLC6A2->chr16:55689516-55740104:+,solute_carrier_family_6_member_2	A172_CENTRAL_NERVOUS_SYSTEM	0.28	1	0.485	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	C7orf50--CCL17	17	32	C7orf50	3078	chr7:1166893:-	CCL17	18029	chr16:57447783:+	INCL_NON_REF_SPLICE	YES	190	0	0.21	1	0.2114	0.3979	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,CCL17->C-C_motif_chemokine_ligand_17,chr16:57438679-57449974:+	A172_CENTRAL_NERVOUS_SYSTEM	0.21	1	0.6093	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	DCAF12--ELMSAN1	22	9	DCAF12	3377	chr9:34125021:-	ELMSAN1	21736	chr14:74206958:-	ONLY_REF_SPLICE	YES	60	5	0.34	0.86	0.2736	0.1119	DCAF12->DDB1_and_CUL4_associated_factor_12,chr9:34086385-34127397:-,ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-	A172_CENTRAL_NERVOUS_SYSTEM	0.34	0.86	0.3855	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	FAM20C--RAPGEF1	19	17	FAM20C	5852	chr7:208976:+	RAPGEF1	25081	chr9:134505711:-	ONLY_REF_SPLICE	YES	98	0	0.27	1	0.2363	0.2114	{Klijn_CCL:Brain=1},FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,RAPGEF1->Oncogene{Bushman},Rap_guanine_nucleotide_exchange_factor_1,chr9:134452157-134615461:-	A172_CENTRAL_NERVOUS_SYSTEM	0.27	1	0.4477	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	TAOK1--CCDC144A	20	9	TAOK1	22436	chr17:27844674:+	CCDC144A	66092	chr17:16675291:+	ONLY_REF_SPLICE	YES	80	0	0.27	1	0.2487	0.1119	{Klijn_CCL:Brain=1},TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,CCDC144A->chr17:16592851-16707767:+,coiled-coil_domain_containing_144A	A172_CENTRAL_NERVOUS_SYSTEM	0.27	1	0.3606	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	21	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2611	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.2611	TRUE	7	10	0	216	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PAFAH1B1--COX10-AS1	12	35	PAFAH1B1	14978	chr17:2579900:+	COX10-AS1	35950	chr17:13694392:-	INCL_NON_REF_SPLICE	YES	151	3	0.24	0.94	0.1492	0.4352	PAFAH1B1->chr17:2496504-2588909:+,platelet_activating_factor_acetylhydrolase_1b_regulatory_subunit_1,COX10-AS1->COX10_antisense_RNA_1,chr17:13659795-13972812:-	A172_CENTRAL_NERVOUS_SYSTEM	0.24	0.94	0.5844	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	VARS--EHMT2	18	9	VARS	4634	chr6:31759387:-	EHMT2	30298	chr6:31848869:-	ONLY_REF_SPLICE	YES	141	67	0.16	0.29	0.2238	0.1119	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[83806],VARS->chr6:31745295-31763730:-,valyl-tRNA_synthetase,EHMT2->chr6:31847536-31865464:-,euchromatic_histone-lysine_N-methyltransferase_2	A172_CENTRAL_NERVOUS_SYSTEM	0.16	0.29	0.3357	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	ADAMTS2--RNF130	17	10	ADAMTS2	7234	chr5:178585724:-	RNF130	34605	chr5:179440311:-	ONLY_REF_SPLICE	YES	1	231	0.96	0.1	0.2114	0.1243	{Klijn_CCL:Brain=1},ADAMTS2->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_2,chr5:178537852-178772431:-,RNF130->chr5:179338651-179499118:-,ring_finger_protein_130	A172_CENTRAL_NERVOUS_SYSTEM	0.1	0.96	0.3357	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	GPR56--ZDHHC1	16	11	GPR56	22984	chr16:57689904:+	ZDHHC1	35213	chr16:67441716:-	ONLY_REF_SPLICE	YES	138	27	0.16	0.5	0.199	0.1368	GPR56->chr16:57644564-57698944:+,ZDHHC1->chr16:67428322-67450736:-,zinc_finger_DHHC-type_containing_1	A172_CENTRAL_NERVOUS_SYSTEM	0.16	0.5	0.3358	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	17	6	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2114	0.0746	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.286	TRUE	0	1	0	26	1	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	18	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2238	0.0124	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.2362	FALSE	499	1288	110	792	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	5	51	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	5	0	0.92	1	0.0622	0.6342	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A172_CENTRAL_NERVOUS_SYSTEM	0.92	1	0.6964	FALSE	344	826	44	306	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MAD1L1--CPNE2	15	6	MAD1L1	33817	chr7:1976323:-	CPNE2	57376	chr16:57159772:+	ONLY_REF_SPLICE	YES	78	107	0.21	0.16	0.1865	0.0746	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,CPNE2->chr16:57126449-57181878:+,copine_2	A172_CENTRAL_NERVOUS_SYSTEM	0.16	0.21	0.2611	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	FAM20C--RAPGEF1	14	8	FAM20C	5852	chr7:208976:+	RAPGEF1	26151	chr9:134504641:-	ONLY_REF_SPLICE	YES	98	0	0.18	1	0.1741	0.0995	{Klijn_CCL:Brain=1},FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,RAPGEF1->Oncogene{Bushman},Rap_guanine_nucleotide_exchange_factor_1,chr9:134452157-134615461:-	A172_CENTRAL_NERVOUS_SYSTEM	0.18	1	0.2736	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	3	52	MT-ND4	1180	chrM:10939:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	12	0	0.82	1	0.0373	0.6466	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A172_CENTRAL_NERVOUS_SYSTEM	0.82	1	0.6839	FALSE	344	826	44	306	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CPNE2--MAFK	15	1	CPNE2	1254	chr16:57126702:+	MAFK	28992	chr7:1578785:+	ONLY_REF_SPLICE	YES	1	116	0.94	0.12	0.1865	0.0124	CPNE2->chr16:57126449-57181878:+,copine_2,MAFK->Oncogene{Bushman},chr7:1570350-1582679:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_K	A172_CENTRAL_NERVOUS_SYSTEM	0.12	0.94	0.1989	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	4	43	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	9	0	0.84	1	0.0497	0.5347	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	A172_CENTRAL_NERVOUS_SYSTEM	0.84	1	0.5844	TRUE	0	35	0	55	35	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	C7orf50--CCL17	6	32	C7orf50	3078	chr7:1166893:-	CCL17	18032	chr16:57447786:+	ONLY_REF_SPLICE	YES	190	0	0.17	1	0.0746	0.3979	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,CCL17->C-C_motif_chemokine_ligand_17,chr16:57438679-57449974:+	A172_CENTRAL_NERVOUS_SYSTEM	0.17	1	0.4725	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	C16orf52--NDUFAB1	13	1	C16orf52	1770	chr16:22019728:+	NDUFAB1	18686	chr16:23598640:-	ONLY_REF_SPLICE	YES	3	638	0.82	0.02	0.1616	0.0124	C16orf52->chr16:22018959-22098855:+,chromosome_16_open_reading_frame_52,NDUFAB1->NADH:ubiquinone_oxidoreductase_subunit_AB1,chr16:23592323-23607677:-	A172_CENTRAL_NERVOUS_SYSTEM	0.02	0.82	0.174	TRUE	0	0	0	1	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	SDK1--EEF2K	12	5	SDK1	23022	chr7:4091462:+	EEF2K	68018	chr16:22268069:+	ONLY_REF_SPLICE	YES	7	10	0.71	0.63	0.1492	0.0622	SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1,EEF2K->chr16:22217603-22298554:+,eukaryotic_elongation_factor_2_kinase	A172_CENTRAL_NERVOUS_SYSTEM	0.63	0.71	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	12	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.1492	0.0497	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A172_CENTRAL_NERVOUS_SYSTEM	0.89	1	0.1989	FALSE	499	1288	110	792	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	12	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3028	0	0	1	0.1492	0.0124	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A172_CENTRAL_NERVOUS_SYSTEM	0	1	0.1616	FALSE	13	9	0	364	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	29	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0497	0.3606	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A172_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.4103	FALSE	344	821	44	306	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	7	16	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	5	0	0.82	1	0.087	0.199	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A172_CENTRAL_NERVOUS_SYSTEM	0.82	1	0.286	TRUE	0	5	0	45	5	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PMFBP1--RADIL	9	8	PMFBP1	7273	chr16:72188110:-	RADIL	36612	chr7:4862185:-	ONLY_REF_SPLICE	YES	1	7	0.94	0.71	0.1119	0.0995	PMFBP1->chr16:72146056-72210777:-,polyamine_modulated_factor_1_binding_protein_1,RADIL->Rap_associating_with_DIL_domain,chr7:4836686-4923350:-	A172_CENTRAL_NERVOUS_SYSTEM	0.71	0.94	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MED27--AC012317.1	9	4	MED27	2412	chr9:134952829:-	AC012317.1	15981	chr16:24675325:-	ONLY_REF_SPLICE	YES	46	0	0.22	1	0.1119	0.0497	MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27,AC012317.1->chr16:24672743-24682383:-	A172_CENTRAL_NERVOUS_SYSTEM	0.22	1	0.1616	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	9	2	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	0	7	1	0.61	0.1119	0.0249	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A172_CENTRAL_NERVOUS_SYSTEM	0.61	1	0.1368	TRUE	0	1	0	21	1	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MAD1L1--CPNE2	9	2	MAD1L1	33817	chr7:1976323:-	CPNE2	60664	chr16:57168687:+	ONLY_REF_SPLICE	YES	78	89	0.12	0.11	0.1119	0.0249	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,CPNE2->chr16:57126449-57181878:+,copine_2	A172_CENTRAL_NERVOUS_SYSTEM	0.11	0.12	0.1368	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	C7orf50--MICALL2	9	1	C7orf50	3078	chr7:1166893:-	MICALL2	21511	chr7:1486464:-	ONLY_REF_SPLICE	YES	190	35	0.05	0.22	0.1119	0.0124	{Klijn_CCL:Brain=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MICALL2->MICAL_like_2,chr7:1468101-1499138:-	A172_CENTRAL_NERVOUS_SYSTEM	0.05	0.22	0.1243	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	METTL9--SDK1	7	6	METTL9	3213	chr16:21611219:+	SDK1	37781	chr7:4088980:+	ONLY_REF_SPLICE	YES	84	6	0.13	0.68	0.087	0.0746	METTL9->chr16:21608539-21668794:+,methyltransferase_like_9,SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1	A172_CENTRAL_NERVOUS_SYSTEM	0.13	0.68	0.1616	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PMFBP1--RADIL	6	10	PMFBP1	8495	chr16:72184507:-	RADIL	36612	chr7:4862185:-	ONLY_REF_SPLICE	YES	0	7	1	0.7	0.0746	0.1243	PMFBP1->chr16:72146056-72210777:-,polyamine_modulated_factor_1_binding_protein_1,RADIL->Rap_associating_with_DIL_domain,chr7:4836686-4923350:-	A172_CENTRAL_NERVOUS_SYSTEM	0.7	1	0.1989	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	TAGLN2--MT-ND4	8	1	TAGLN2	6224	chr1:159888401:-	MT-ND4	10197	chrM:11228:+	INCL_NON_REF_SPLICE	YES	3934	8450	0	0	0.0995	0.0124	TAGLN2->chr1:159887897-159895522:-,transgelin_2,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	A172_CENTRAL_NERVOUS_SYSTEM	0	0	0.1119	FALSE	0	0	0	2	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	C16orf52--PALB2	7	4	C16orf52	1770	chr16:22019728:+	PALB2	30673	chr16:23614990:-	ONLY_REF_SPLICE	YES	3	21	0.79	0.34	0.087	0.0497	C16orf52->chr16:22018959-22098855:+,chromosome_16_open_reading_frame_52,PALB2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:23614488-23652631:-,partner_and_localizer_of_BRCA2	A172_CENTRAL_NERVOUS_SYSTEM	0.34	0.79	0.1367	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	GUSBP9--COL4A4	8	0	GUSBP9	9242	chr5:70498080:-	COL4A4	52178	chr2:227898197:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0995	0	GUSBP9->chr5:70435716-70585611:-,glucuronidase,_beta_pseudogene_9,COL4A4->chr2:227867427-228028829:-,collagen_type_IV_alpha_4	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0995	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MED27--C16orf52	7	2	MED27	2412	chr9:134952829:-	C16orf52	16888	chr16:22086808:+	ONLY_REF_SPLICE	YES	46	10	0.16	0.47	0.087	0.0249	MED27->chr9:134735494-134955295:-,mediator_complex_subunit_27,C16orf52->chr16:22018959-22098855:+,chromosome_16_open_reading_frame_52	A172_CENTRAL_NERVOUS_SYSTEM	0.16	0.47	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CTD-2547E10.2--CTB-31N19.2	6	5	CTD-2547E10.2	1617	chr16:21531149:-	CTB-31N19.2	33694	chr16:21559327:-	ONLY_REF_SPLICE	YES	5	5	0.69	0.69	0.0746	0.0622	LOCAL_REARRANGEMENT:-:[12501],CTD-2547E10.2->chr16:21458004-21531765:-,CTB-31N19.2->chr16:21544266-21561694:-	A172_CENTRAL_NERVOUS_SYSTEM	0.69	0.69	0.1368	TRUE	0	0	0	2	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	DBF4B--NMT1	6	5	DBF4B	1759	chr17:42786734:+	NMT1	23256	chr17:43159012:+	ONLY_REF_SPLICE	YES	48	290	0.19	0.04	0.0746	0.0622	DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+,NMT1->N-myristoyltransferase_1,Oncogene{Bushman},chr17:43128978-43186384:+	A172_CENTRAL_NERVOUS_SYSTEM	0.04	0.19	0.1368	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	NFAT5--IQCE	1	25	NFAT5	2281	chr16:69600277:+	IQCE	57506	chr7:2644515:+	ONLY_REF_SPLICE	NO	10	50	0.72	0.34	0.0124	0.3109	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+	A172_CENTRAL_NERVOUS_SYSTEM	0.34	0.72	0.3233	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	ABL1--GINS3	6	4	ABL1	1510	chr9:133589842:+	GINS3	31566	chr16:58438403:+	ONLY_REF_SPLICE	YES	0	77	1	0.11	0.0746	0.0497	ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	A172_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.1243	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	DPH6-AS1--RP11-684B21.1	7	0	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.087	0	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.087	TRUE	17	119	17	33	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	SUN1--POMT1	7	0	SUN1	1783	chr7:856310:+	POMT1	54923	chr9:134397434:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.087	0	SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+,POMT1->chr9:134378289-134399193:+,protein_O-mannosyltransferase_1	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	WWP2--PDXDC2P	7	0	WWP2	30081	chr16:69970355:+	PDXDC2P	65983	chr16:70012185:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.087	0	LOCAL_INVERSION:+:-,chr16:[34556],WWP2->WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr16:69796209-69975644:+,PDXDC2P->chr16:70010200-70099851:-,chr16:70044654-70099848:-,pyridoxal-dependent_decarboxylase_domain_containing_2,_pseudogene	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	LARS--AKAP6	6	3	LARS	14360	chr5:145531425:-	AKAP6	38807	chr14:32902666:+	ONLY_REF_SPLICE	YES	201	0	0.04	1	0.0746	0.0373	LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	A172_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PAFAH1B1--COX10-AS1	4	11	PAFAH1B1	14978	chr17:2579900:+	COX10-AS1	37757	chr17:13680666:-	ONLY_REF_SPLICE	YES	151	8	0.09	0.65	0.0497	0.1368	PAFAH1B1->chr17:2496504-2588909:+,platelet_activating_factor_acetylhydrolase_1b_regulatory_subunit_1,COX10-AS1->COX10_antisense_RNA_1,chr17:13659795-13972812:-	A172_CENTRAL_NERVOUS_SYSTEM	0.09	0.65	0.1865	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	6	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	20	1	0.29	0.0746	0.0249	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A172_CENTRAL_NERVOUS_SYSTEM	0.29	1	0.0995	TRUE	465	1949	224	605	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	ABL1--GINS3	5	4	ABL1	1510	chr9:133589842:+	GINS3	30165	chr16:58437002:+	ONLY_REF_SPLICE	YES	0	75	1	0.11	0.0622	0.0497	ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	A172_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	TMEM244--ARHGAP18	5	4	TMEM244	1392	chr6:130182301:-	ARHGAP18	10024	chr6:129963163:-	ONLY_REF_SPLICE	YES	9	180	0.5	0.05	0.0622	0.0497	GTEx_FI:{Brain=[count:4=pct:0.6]},TMEM244->chr6:130152389-130182692:-,transmembrane_protein_244,ARHGAP18->Rho_GTPase_activating_protein_18,chr6:129897277-130031370:-	A172_CENTRAL_NERVOUS_SYSTEM	0.05	0.5	0.1119	TRUE	3	2	2	2	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	USP31--AC093627.9	5	4	USP31	1633	chr16:23159959:-	AC093627.9	33199	chr7:136271:-	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.0622	0.0497	USP31->chr16:23072727-23160591:-,ubiquitin_specific_peptidase_31,AC093627.9->chr7:135853-149466:-	A172_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	USP31--AC093627.9	5	4	USP31	1633	chr16:23159959:-	AC093627.9	33202	chr7:136268:-	INCL_NON_REF_SPLICE	YES	3	0	0.75	1	0.0622	0.0497	USP31->chr16:23072727-23160591:-,ubiquitin_specific_peptidase_31,AC093627.9->chr7:135853-149466:-	A172_CENTRAL_NERVOUS_SYSTEM	0.75	1	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	DBF4B--NMT1	4	7	DBF4B	1232	chr17:42786207:+	NMT1	21628	chr17:43138651:+	ONLY_REF_SPLICE	YES	32	0	0.26	1	0.0497	0.087	DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+,NMT1->N-myristoyltransferase_1,Oncogene{Bushman},chr17:43128978-43186384:+	A172_CENTRAL_NERVOUS_SYSTEM	0.26	1	0.1367	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CTB-31N19.2--RANBP10	1	18	CTB-31N19.2	2725	chr16:21558722:-	RANBP10	17428	chr16:67768945:-	ONLY_REF_SPLICE	YES	0	25	1	0.43	0.0124	0.2238	CTB-31N19.2->chr16:21544266-21561694:-,RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-	A172_CENTRAL_NERVOUS_SYSTEM	0.43	1	0.2362	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	AC104389.28--HBE1	5	1	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	5	2	0.55	0.75	0.0622	0.0124	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	A172_CENTRAL_NERVOUS_SYSTEM	0.55	0.75	0.0746	TRUE	0	16	0	53	13	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CTD-2547E10.2--RANBP10	3	9	CTD-2547E10.2	1617	chr16:21531149:-	RANBP10	40242	chr16:67771938:-	ONLY_REF_SPLICE	YES	5	21	0.71	0.36	0.0373	0.1119	CTD-2547E10.2->chr16:21458004-21531765:-,RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-	A172_CENTRAL_NERVOUS_SYSTEM	0.36	0.71	0.1492	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	5	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0622	0.0124	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0746	FALSE	499	1288	110	792	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	USB1--SLC6A2	1	17	USB1	3429	chr16:58036567:+	SLC6A2	19544	chr16:55690556:+	ONLY_REF_SPLICE	YES	108	0	0.14	1	0.0124	0.2114	USB1->U6_snRNA_biogenesis_phosphodiesterase_1,chr16:58033450-58055522:+,SLC6A2->chr16:55689516-55740104:+,solute_carrier_family_6_member_2	A172_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.2238	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CACYBP--RABGAP1L	4	4	CACYBP	2032	chr1:174969331:+	RABGAP1L	49111	chr1:174926594:+	ONLY_REF_SPLICE	YES	766	18	0.01	0.31	0.0497	0.0497	{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:+:[3855],CACYBP->calcyclin_binding_protein,chr1:174968300-174980851:+,RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+	A172_CENTRAL_NERVOUS_SYSTEM	0.01	0.31	0.0994	FALSE	0	1	0	1	1	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CBFB--FUK	1	16	CBFB	3391	chr16:67070658:+	FUK	16092	chr16:70496076:+	ONLY_REF_SPLICE	YES	159	2	0.1	0.89	0.0124	0.199	{Klijn_CCL:Brain=1},CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,FUK->chr16:70488324-70514177:+,fucokinase	A172_CENTRAL_NERVOUS_SYSTEM	0.1	0.89	0.2114	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0622	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0622	FALSE	13	9	0	364	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	3	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	17	0	0.29	1	0.0497	0.0373	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A172_CENTRAL_NERVOUS_SYSTEM	0.29	1	0.087	FALSE	344	826	44	306	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	C7orf50--CCL17	2	10	C7orf50	3078	chr7:1166893:-	CCL17	19161	chr16:57448993:+	ONLY_REF_SPLICE	YES	190	5	0.06	0.71	0.0249	0.1243	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,CCL17->C-C_motif_chemokine_ligand_17,chr16:57438679-57449974:+	A172_CENTRAL_NERVOUS_SYSTEM	0.06	0.71	0.1492	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	NFAT5--IQCE	1	14	NFAT5	2281	chr16:69600277:+	IQCE	58501	chr7:2645510:+	ONLY_REF_SPLICE	YES	10	102	0.6	0.13	0.0124	0.1741	NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,IQCE->IQ_motif_containing_E,Oncogene{Bushman},chr7:2598632-2654368:+	A172_CENTRAL_NERVOUS_SYSTEM	0.13	0.6	0.1865	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	2	9	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	5	0	0.69	1	0.0249	0.1119	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A172_CENTRAL_NERVOUS_SYSTEM	0.69	1	0.1368	TRUE	0	1	0	20	1	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CTB-31N19.2--RANBP10	2	9	CTB-31N19.2	2213	chr16:21559234:-	RANBP10	15693	chr16:67771938:-	ONLY_REF_SPLICE	YES	0	21	1	0.34	0.0249	0.1119	CTB-31N19.2->chr16:21544266-21561694:-,RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-	A172_CENTRAL_NERVOUS_SYSTEM	0.34	1	0.1368	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PEA15--MT-RNR2	4	1	PEA15	6398	chr1:160183374:+	MT-RNR2	11219	chrM:1699:+	INCL_NON_REF_SPLICE	NO	134	0	0.04	1	0.0497	0.0124	PEA15->chr1:160175127-160185166:+,phosphoprotein_enriched_in_astrocytes_15,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	A172_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0621	FALSE	0	0	0	1	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	SETX--TNRC6A	4	1	SETX	13517	chr9:135202340:-	TNRC6A	53789	chr16:24808811:+	INCL_NON_REF_SPLICE	YES	51	41	0.09	0.11	0.0497	0.0124	{Klijn_CCL:Brain=1},SETX->chr9:135136743-135230372:-,senataxin,TNRC6A->chr16:24741016-24838953:+,trinucleotide_repeat_containing_6A	A172_CENTRAL_NERVOUS_SYSTEM	0.09	0.11	0.0621	TRUE	0	0	0	1	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	AP003900.6--AC011718.2	2	8	AP003900.6	2187	chr21:11172043:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0249	0.0995	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A172_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.1244	TRUE	0	0	0	5	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0497	FALSE	344	821	44	306	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0497	FALSE	499	1288	110	792	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PRKRIRP3--PRKG1	4	0	PRKRIRP3	3140	chr10:54173034:+	PRKG1	28737	chr10:54053675:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	PRKRIRP3->chr10:54170895-54173252:+,PRKG1->chr10:52750945-54058110:+,protein_kinase,_cGMP-dependent,_type_I	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	3	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.54	0.0373	0.0497	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A172_CENTRAL_NERVOUS_SYSTEM	0.54	1	0.087	TRUE	458	1351	185	561	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	EIF3B--TTYH3	3	3	EIF3B	7545	chr7:2406083:+	TTYH3	23965	chr7:2685406:+	INCL_NON_REF_SPLICE	YES	232	116	0.03	0.05	0.0373	0.0373	EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B,TTYH3->chr7:2671585-2704436:+,tweety_family_member_3	A172_CENTRAL_NERVOUS_SYSTEM	0.03	0.05	0.0746	TRUE	0	0	0	1	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	WWP2--AMZ1	3	2	WWP2	8568	chr16:69833198:+	AMZ1	49248	chr7:2755350:+	INCL_NON_REF_SPLICE	YES	17	2	0.23	0.71	0.0373	0.0249	WWP2->WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr16:69796209-69975644:+,AMZ1->archaelysin_family_metallopeptidase_1,chr7:2719156-2815134:+	A172_CENTRAL_NERVOUS_SYSTEM	0.23	0.71	0.0622	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PIK3C3--RP1-127D3.4	3	1	PIK3C3	15488	chr18:39595530:+	RP1-127D3.4	47264	chr1:171173127:-	ONLY_REF_SPLICE	YES	31	0	0.11	1	0.0373	0.0124	PIK3C3->chr18:39535171-39667794:+,phosphatidylinositol_3-kinase_catalytic_subunit_type_3,RP1-127D3.4->chr1:171168383-171196927:-	A172_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PRKAR1B--FAM20C	3	1	PRKAR1B	1441	chr7:766847:-	FAM20C	30291	chr7:286381:+	ONLY_REF_SPLICE	YES	0	97	1	0.04	0.0373	0.0124	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta,FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C	A172_CENTRAL_NERVOUS_SYSTEM	0.04	1	0.0497	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CES5A--RP11-105C20.2	3	0	CES5A	15355	chr16:55890289:-	RP11-105C20.2	27548	chr16:59744199:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	CES5A->carboxylesterase_5A,chr16:55880066-55989943:-,RP11-105C20.2->chr16:59743897-59788752:-	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	SDK1--WWP2	3	0	SDK1	1437	chr7:3341516:+	WWP2	74838	chr16:69905707:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0373	0	SDK1->chr7:3341080-4308632:+,sidekick_cell_adhesion_molecule_1,WWP2->WW_domain_containing_E3_ubiquitin_protein_ligase_2,chr16:69796209-69975644:+	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	DHX38--C9orf171	2	3	DHX38	16950	chr16:72144976:+	C9orf171	22875	chr9:135357697:+	ONLY_REF_SPLICE	YES	33	0	0.13	1	0.0249	0.0373	DHX38->DEAH-box_helicase_38,chr16:72127461-72146811:+,C9orf171->chr9:135285430-135448704:+	A172_CENTRAL_NERVOUS_SYSTEM	0.13	1	0.0622	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	LARS--AKAP6	2	3	LARS	14360	chr5:145531425:-	AKAP6	37367	chr14:32871204:+	ONLY_REF_SPLICE	YES	201	0	0.02	1	0.0249	0.0373	LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	A172_CENTRAL_NERVOUS_SYSTEM	0.02	1	0.0622	TRUE	0	0	0	1	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0.0373	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0622	FALSE	515	4851	409	746	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CTB-31N19.2--RANBP10	1	6	CTB-31N19.2	2725	chr16:21558722:-	RANBP10	18613	chr16:67765487:-	ONLY_REF_SPLICE	YES	0	56	1	0.11	0.0124	0.0746	CTB-31N19.2->chr16:21544266-21561694:-,RANBP10->RAN_binding_protein_10,chr16:67757005-67840555:-	A172_CENTRAL_NERVOUS_SYSTEM	0.11	1	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	FGFR2--COL14A1	2	2	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0249	0.0249	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	A172_CENTRAL_NERVOUS_SYSTEM	0.8	1	0.0498	TRUE	0	0	0	32	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MAP3K14--ARHGAP27	2	2	MAP3K14	12074	chr17:43344459:-	ARHGAP27	29482	chr17:43483449:-	ONLY_REF_SPLICE	YES	121	4	0.03	0.5	0.0249	0.0249	LOCAL_REARRANGEMENT:-:[76861],MAP3K14->chr17:43340488-43394414:-,mitogen-activated_protein_kinase_kinase_kinase_14,ARHGAP27->Rho_GTPase_activating_protein_27,chr17:43471275-43511787:-	A172_CENTRAL_NERVOUS_SYSTEM	0.03	0.5	0.0498	TRUE	0	0	0	1	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PROSC--CHMP1A	2	2	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	105	275	0.04	0.01	0.0249	0.0249	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	A172_CENTRAL_NERVOUS_SYSTEM	0.01	0.04	0.0498	FALSE	13	55	3	29	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	TAOK1--CCDC144A	1	6	TAOK1	22436	chr17:27844674:+	CCDC144A	67612	chr17:16676811:+	ONLY_REF_SPLICE	YES	80	1	0.08	0.88	0.0124	0.0746	{Klijn_CCL:Brain=1},TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,CCDC144A->chr17:16592851-16707767:+,coiled-coil_domain_containing_144A	A172_CENTRAL_NERVOUS_SYSTEM	0.08	0.88	0.087	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	KDM5B--RABIF	2	1	KDM5B	27412	chr1:202704557:-	RABIF	38806	chr1:202850351:-	ONLY_REF_SPLICE	YES	75	143	0.04	0.02	0.0249	0.0124	LOCAL_REARRANGEMENT:-:[69487],KDM5B->chr1:202696526-202778598:-,lysine_demethylase_5B,RABIF->RAB_interacting_factor,chr1:202848085-202858263:-	A172_CENTRAL_NERVOUS_SYSTEM	0.02	0.04	0.0373	TRUE	0	0	0	1	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PPP2R4--RPS6KA5	2	1	PPP2R4	12285	chr9:131899971:+	RPS6KA5	33713	chr14:91372643:-	ONLY_REF_SPLICE	YES	304	11	0.01	0.21	0.0249	0.0124	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,RPS6KA5->chr14:91336799-91526980:-,ribosomal_protein_S6_kinase_A5	A172_CENTRAL_NERVOUS_SYSTEM	0.01	0.21	0.0373	FALSE	0	0	0	1	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	EIF4A2--DDHD2	2	0	EIF4A2	5380	chr3:186505373:+	DDHD2	28993	chr8:38117558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,DDHD2->DDHD_domain_containing_2,chr8:38082736-38133076:+	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	FAM20C--RAPGEF1	2	0	FAM20C	3327	chr7:195732:+	RAPGEF1	29994	chr9:134497385:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	{Klijn_CCL:Brain=1},FAM20C->chr7:192969-300711:+,family_with_sequence_similarity_20_member_C,RAPGEF1->Oncogene{Bushman},Rap_guanine_nucleotide_exchange_factor_1,chr9:134452157-134615461:-	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MTMR10--TRPM1	2	0	MTMR10	1831	chr15:31282980:-	TRPM1	33460	chr15:31359390:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	LOCAL_REARRANGEMENT:-:[9454],MTMR10->chr15:31231144-31283810:-,myotubularin_related_protein_10,TRPM1->Oncogene{Bushman},chr15:31293264-31453476:-,transient_receptor_potential_cation_channel_subfamily_M_member_1	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	SAP130--PARVA	2	0	SAP130	2940	chr2:128783755:-	PARVA	29597	chr11:12495292:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-,PARVA->chr11:12398732-12552348:+,parvin_alpha	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	UQCRC2--PDZD9	2	0	UQCRC2	4162	chr16:21969920:+	PDZD9	21922	chr16:22007822:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	LOCAL_INVERSION:+:-:[205],UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II,PDZD9->PDZ_domain_containing_9,chr16:21995186-22012433:-	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	UQCRC2--PDZD9	2	0	UQCRC2	4162	chr16:21969920:+	PDZD9	24173	chr16:22000112:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	LOCAL_INVERSION:+:-:[205],UQCRC2->Oncogene{Bushman},chr16:21963981-21994981:+,ubiquinol-cytochrome_c_reductase_core_protein_II,PDZD9->PDZ_domain_containing_9,chr16:21995186-22012433:-	A172_CENTRAL_NERVOUS_SYSTEM	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	DBF4B--NMT1	1	3	DBF4B	1232	chr17:42786207:+	NMT1	23256	chr17:43159012:+	ONLY_REF_SPLICE	YES	32	290	0.11	0.01	0.0124	0.0373	DBF4B->DBF4_zinc_finger_B,chr17:42785976-42829632:+,NMT1->N-myristoyltransferase_1,Oncogene{Bushman},chr17:43128978-43186384:+	A172_CENTRAL_NERVOUS_SYSTEM	0.01	0.11	0.0497	FALSE	0	0	0	1	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	EIF3B--TTYH3	1	3	EIF3B	7545	chr7:2406083:+	TTYH3	25046	chr7:2686487:+	ONLY_REF_SPLICE	YES	232	99	0.02	0.04	0.0124	0.0373	EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B,TTYH3->chr7:2671585-2704436:+,tweety_family_member_3	A172_CENTRAL_NERVOUS_SYSTEM	0.02	0.04	0.0497	TRUE	0	0	0	1	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	MAD1L1--CPNE2	1	3	MAD1L1	33817	chr7:1976323:-	CPNE2	58510	chr16:57161761:+	ONLY_REF_SPLICE	YES	78	89	0.05	0.04	0.0124	0.0373	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,CPNE2->chr16:57126449-57181878:+,copine_2	A172_CENTRAL_NERVOUS_SYSTEM	0.04	0.05	0.0497	TRUE	0	0	0	1	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	BOLA3--MOB1A	1	2	BOLA3	3806	chr2:74372316:-	MOB1A	11113	chr2:74399879:-	ONLY_REF_SPLICE	YES	189	416	0.02	0.01	0.0124	0.0249	LOCAL_REARRANGEMENT:-:[4534],BOLA3->bolA_family_member_3,chr2:74362525-74375121:-,MOB1A->MOB_kinase_activator_1A,chr2:74379655-74406025:-	A172_CENTRAL_NERVOUS_SYSTEM	0.01	0.02	0.0373	FALSE	0	1	0	1	1	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CSNK2A2--AC093627.10	1	2	CSNK2A2	1288	chr16:58231537:-	AC093627.10	25093	chr7:153409:+	ONLY_REF_SPLICE	YES	11	5	0.21	0.38	0.0124	0.0249	CSNK2A2->casein_kinase_2_alpha_2,chr16:58191811-58231824:-,AC093627.10->chr7:149597-155465:+	A172_CENTRAL_NERVOUS_SYSTEM	0.21	0.38	0.0373	TRUE	0	0	0	1	0	TRUE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PPP2R4--RPS6KA5	1	2	PPP2R4	13972	chr9:131901928:+	RPS6KA5	33713	chr14:91372643:-	ONLY_REF_SPLICE	YES	381	11	0.01	0.21	0.0124	0.0249	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,RPS6KA5->chr14:91336799-91526980:-,ribosomal_protein_S6_kinase_A5	A172_CENTRAL_NERVOUS_SYSTEM	0.01	0.21	0.0373	FALSE	0	0	0	1	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PPP2R4--RPS6KA5	1	2	PPP2R4	14474	chr9:131902430:+	RPS6KA5	33713	chr14:91372643:-	ONLY_REF_SPLICE	NO	385	11	0.01	0.21	0.0124	0.0249	PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4,RPS6KA5->chr14:91336799-91526980:-,ribosomal_protein_S6_kinase_A5	A172_CENTRAL_NERVOUS_SYSTEM	0.01	0.21	0.0373	FALSE	0	0	0	1	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CBFB--FUK	1	1	CBFB	3391	chr16:67070658:+	FUK	18790	chr16:70499029:+	ONLY_REF_SPLICE	YES	159	16	0.01	0.11	0.0124	0.0124	{Klijn_CCL:Brain=1},CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,FUK->chr16:70488324-70514177:+,fucokinase	A172_CENTRAL_NERVOUS_SYSTEM	0.01	0.11	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	CCDC88A--RTN4	1	1	CCDC88A	2106	chr2:55645952:-	RTN4	62662	chr2:55214834:-	ONLY_REF_SPLICE	YES	50	122	0.04	0.02	0.0124	0.0124	CCDC88A->chr2:55514978-55647057:-,coiled-coil_domain_containing_88A,RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4	A172_CENTRAL_NERVOUS_SYSTEM	0.02	0.04	0.0248	TRUE	0	1	0	3	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	HNRNPA2B1--GNAS	1	1	HNRNPA2B1	1958	chr7:26240192:-	GNAS	30423	chr20:57470667:+	ONLY_REF_SPLICE	YES	2310	657	0	0	0.0124	0.0124	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	A172_CENTRAL_NERVOUS_SYSTEM	0	0	0.0248	FALSE	0	0	0	3	0	FALSE	ACH-000558
A172_CENTRAL_NERVOUS_SYSTEM	PPAPDC1B--CHMP1A	1	1	PPAPDC1B	4103	chr8:38123659:-	CHMP1A	14892	chr16:89713739:-	ONLY_REF_SPLICE	YES	59	275	0.03	0.01	0.0124	0.0124	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PPAPDC1B->chr8:38120648-38126761:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	A172_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.0248	FALSE	0	3	0	1	0	FALSE	ACH-000558
HEPG2_LIVER	MT-TA--MT-TN	93	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1156	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEPG2_LIVER	1	1	1.1156	FALSE	369	2501	205	193	0	FALSE	ACH-000739
HEPG2_LIVER	TIMM23B--LINC00843	82	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.9836	0.3719	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HEPG2_LIVER	0.98	1	1.3555	TRUE	508	994	45	981	0	FALSE	ACH-000739
HEPG2_LIVER	MT-TA--MT-TC	49	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5878	0.072	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEPG2_LIVER	1	1	0.6598	FALSE	462	80	0	856	0	FALSE	ACH-000739
HEPG2_LIVER	TIMM23--RP11-464F9.1	46	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	353	7	0.12	0.87	0.5518	0.024	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HEPG2_LIVER	0.12	0.87	0.5758	TRUE	519	3926	326	965	0	FALSE	ACH-000739
HEPG2_LIVER	MT-TA--MT-TN	13	47	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1559	0.5638	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEPG2_LIVER	1	1	0.7197	FALSE	369	2501	205	193	0	FALSE	ACH-000739
HEPG2_LIVER	MT-ND6--MT-TE	19	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2279	0.072	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEPG2_LIVER	1	1	0.2999	FALSE	499	1288	110	792	0	FALSE	ACH-000739
HEPG2_LIVER	ZNF654--HMGB2	20	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2399	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HEPG2_LIVER	1	1	0.2399	TRUE	0	0	0	518	0	FALSE	ACH-000739
HEPG2_LIVER	MT-TA--MT-TN	11	33	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1319	0.3958	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEPG2_LIVER	1	1	0.5277	FALSE	369	2501	205	193	0	FALSE	ACH-000739
HEPG2_LIVER	RP11-307P5.1--SASH1	16	6	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	6	1	0.79	0.1919	0.072	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HEPG2_LIVER	0.79	1	0.2639	TRUE	0	2	0	37	2	FALSE	ACH-000739
HEPG2_LIVER	MT-TA--MT-TN	6	39	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.072	0.4678	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEPG2_LIVER	1	1	0.5398	FALSE	369	2501	205	193	0	FALSE	ACH-000739
HEPG2_LIVER	MT-ND6--MT-TE	12	13	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1439	0.1559	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEPG2_LIVER	1	1	0.2998	FALSE	499	1288	110	792	0	FALSE	ACH-000739
HEPG2_LIVER	CALM3--MT-ND4L	10	14	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1603	0	0.01	1	0.12	0.1679	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEPG2_LIVER	0.01	1	0.2879	FALSE	1	1	0	107	0	FALSE	ACH-000739
HEPG2_LIVER	LMO7--UCHL3	11	10	LMO7	6975	chr13:76210862:+	UCHL3	56568	chr13:76178905:+	ONLY_REF_SPLICE	YES	15	118	0.58	0.15	0.1319	0.12	{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:+:[14485],LMO7->LIM_domain_7,Oncogene{Bushman},chr13:76194570-76434004:+,UCHL3->chr13:76123619-76180085:+,ubiquitin_C-terminal_hydrolase_L3	HEPG2_LIVER	0.15	0.58	0.2519	TRUE	0	0	0	1	0	TRUE	ACH-000739
HEPG2_LIVER	RP11-96H19.1--RP11-446N19.1	12	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.94	0.94	0.1439	0.06	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEPG2_LIVER	0.94	0.94	0.2039	FALSE	515	4851	409	746	0	FALSE	ACH-000739
HEPG2_LIVER	MT-ND6--MT-TE	10	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.79	1	0.12	0.108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEPG2_LIVER	0.79	1	0.228	FALSE	499	1288	110	792	0	FALSE	ACH-000739
HEPG2_LIVER	SCARB1--UBC	11	4	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	854	47	0.02	0.24	0.1319	0.048	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	HEPG2_LIVER	0.02	0.24	0.1799	TRUE	55	66	6	101	0	FALSE	ACH-000739
HEPG2_LIVER	MT-TA--MT-TN	9	10	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.108	0.12	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEPG2_LIVER	1	1	0.228	FALSE	369	2501	205	193	0	FALSE	ACH-000739
HEPG2_LIVER	MT-ND6--MT-TE	3	32	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0.3838	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEPG2_LIVER	1	1	0.4198	FALSE	499	1288	110	792	0	FALSE	ACH-000739
HEPG2_LIVER	MT-ND6--MT-TE	9	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.108	0.084	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEPG2_LIVER	1	1	0.192	FALSE	499	1288	110	792	0	FALSE	ACH-000739
HEPG2_LIVER	MT-TA--MT-TN	3	31	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0.3719	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEPG2_LIVER	1	1	0.4079	FALSE	369	2501	205	193	0	FALSE	ACH-000739
HEPG2_LIVER	MT-ND6--MT-TE	4	21	MT-ND6	1053	chrM:14621:-	MT-TE	4526	chrM:14742:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.048	0.2519	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEPG2_LIVER	1	1	0.2999	FALSE	499	1288	110	792	0	FALSE	ACH-000739
HEPG2_LIVER	MT-ND6--MT-TE	4	19	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.82	1	0.048	0.2279	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEPG2_LIVER	0.82	1	0.2759	FALSE	499	1288	110	792	0	FALSE	ACH-000739
HEPG2_LIVER	MT-TA--MT-TC	8	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.096	0.036	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEPG2_LIVER	1	1	0.132	FALSE	462	80	0	856	0	FALSE	ACH-000739
HEPG2_LIVER	MT-ND6--MT-TE	6	9	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	5	0	0.75	1	0.072	0.108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEPG2_LIVER	0.75	1	0.18	FALSE	499	1288	110	792	0	FALSE	ACH-000739
HEPG2_LIVER	MT-ND6--MT-TE	6	9	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.79	1	0.072	0.108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEPG2_LIVER	0.79	1	0.18	FALSE	499	1288	110	792	0	FALSE	ACH-000739
HEPG2_LIVER	RP11-680G10.1--GSE1	7	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	14	1	0.46	0.084	0.06	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEPG2_LIVER	0.46	1	0.144	TRUE	458	1351	185	561	0	FALSE	ACH-000739
HEPG2_LIVER	MT-TA--MT-TC	6	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.072	0.096	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEPG2_LIVER	1	1	0.168	FALSE	462	80	0	856	0	FALSE	ACH-000739
HEPG2_LIVER	C10orf112--PLXDC2	7	3	C10orf112	32754	chr10:20079115:+	PLXDC2	37923	chr10:20290704:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.084	0.036	NEIGHBORS[25838],C10orf112->chr10:19492779-20079330:+,PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2	HEPG2_LIVER	1	1	0.12	FALSE	73	74	3	10	0	FALSE	ACH-000739
HEPG2_LIVER	MT-ND6--MT-TE	3	19	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.036	0.2279	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEPG2_LIVER	0.81	1	0.2639	FALSE	499	1288	110	792	0	FALSE	ACH-000739
HEPG2_LIVER	RP11-141M1.3--STARD13	6	5	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	33	1	0.25	0.072	0.06	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HEPG2_LIVER	0.25	1	0.132	FALSE	49	120	16	70	0	FALSE	ACH-000739
HEPG2_LIVER	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.084	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEPG2_LIVER	1	1	0.084	FALSE	462	80	0	856	0	FALSE	ACH-000739
HEPG2_LIVER	NRIP1--AF127936.7	5	5	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.71	1	0.06	0.06	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEPG2_LIVER	0.71	1	0.12	FALSE	292	1546	117	613	0	FALSE	ACH-000739
HEPG2_LIVER	PRRC2A--MT-ND5	6	1	PRRC2A	10211	chr6:31598538:+	MT-ND5	22015	chrM:14130:+	INCL_NON_REF_SPLICE	NO	183	964	0.04	0.01	0.072	0.012	PRRC2A->chr6:31588497-31605548:+,proline_rich_coiled-coil_2A,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HEPG2_LIVER	0.01	0.04	0.084	FALSE	0	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	RP11-120D5.1--MID1	5	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	2	0.77	0.83	0.06	0.06	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEPG2_LIVER	0.77	0.83	0.12	FALSE	16	356	14	466	0	FALSE	ACH-000739
HEPG2_LIVER	C10orf10--SERPINA1	6	0	C10orf10	1193	chr10:45474066:-	SERPINA1	10483	chr14:94854925:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.072	0	C10orf10->chr10:45466429-45474258:-,chromosome_10_open_reading_frame_10,SERPINA1->Oncogene{Bushman},chr14:94843084-94857030:-,serpin_family_A_member_1	HEPG2_LIVER	1	1	0.072	TRUE	0	0	0	1	0	TRUE	ACH-000739
HEPG2_LIVER	MT-TA--MT-TN	6	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.072	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEPG2_LIVER	1	1	0.072	FALSE	369	2501	205	193	0	FALSE	ACH-000739
HEPG2_LIVER	ALB--TF	4	6	ALB	13461	chr4:74283848:+	TF	22258	chr3:133467315:+	INCL_NON_REF_SPLICE	YES	31970	6595	0	0	0.048	0.072	GTEx&tcga_normals:64/3694=1.73%,GTEx:1.33%,GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},ALB->albumin,chr4:74262831-74287129:+,TF->chr3:133464800-133497850:+,transferrin	HEPG2_LIVER	0	0	0.12	TRUE	0	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	CTD-2337A12.1--CAST	5	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	22	1	0.24	0.06	0.024	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HEPG2_LIVER	0.24	1	0.084	TRUE	347	1186	183	220	0	FALSE	ACH-000739
HEPG2_LIVER	AFP--ALB	5	1	AFP	6643	chr4:74306530:+	ALB	25870	chr4:74275072:+	ONLY_REF_SPLICE	YES	11996	31580	0	0	0.06	0.012	DGD_PARALOGS,PROTCLUST,LOCAL_REARRANGEMENT:+:[9726],AFP->alpha_fetoprotein,chr4:74296855-74321891:+,ALB->albumin,chr4:74262831-74287129:+	HEPG2_LIVER	0	0	0.072	FALSE	0	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	GPC3--GNAS	5	1	GPC3	1585	chrX:133119338:-	GNAS	28297	chr20:57466760:+	INCL_NON_REF_SPLICE	NO	8945	24	0	0.2	0.06	0.012	GPC3->Oncogene{Bushman},chrX:132669773-133119922:-,glypican_3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HEPG2_LIVER	0	0.2	0.072	FALSE	0	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	MLLT10--C10orf112	3	8	MLLT10	20170	chr10:21970305:+	C10orf112	40675	chr10:19546613:+	ONLY_REF_SPLICE	YES	54	0	0.17	1	0.036	0.096	MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,C10orf112->chr10:19492779-20079330:+	HEPG2_LIVER	0.17	1	0.132	TRUE	0	0	0	1	0	TRUE	ACH-000739
HEPG2_LIVER	PRRC2A--MT-ND5	5	0	PRRC2A	7515	chr6:31595842:+	MT-ND5	21929	chrM:14044:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.06	0	PRRC2A->chr6:31588497-31605548:+,proline_rich_coiled-coil_2A,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HEPG2_LIVER	1	1	0.06	FALSE	0	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	NRIP1--AF127936.7	3	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	27	0	0.25	1	0.036	0.072	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEPG2_LIVER	0.25	1	0.108	FALSE	125	705	46	456	0	FALSE	ACH-000739
HEPG2_LIVER	ALB--TF	3	4	ALB	9453	chr4:74279263:+	TF	21025	chr3:133466082:+	INCL_NON_REF_SPLICE	NO	32632	586	0	0.01	0.036	0.048	GTEx&tcga_normals:64/3694=1.73%,GTEx:1.33%,GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},ALB->albumin,chr4:74262831-74287129:+,TF->chr3:133464800-133497850:+,transferrin	HEPG2_LIVER	0	0.01	0.084	FALSE	0	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	MT-TA--MT-TN	4	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.048	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEPG2_LIVER	1	1	0.048	FALSE	369	2501	205	193	0	FALSE	ACH-000739
HEPG2_LIVER	RPRD2--RPS28	4	0	RPRD2	2337	chr1:150337154:+	RPS28	24316	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.048	0	RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HEPG2_LIVER	1	1	0.048	TRUE	0	0	0	1	0	TRUE	ACH-000739
HEPG2_LIVER	NRIP1--AF127936.7	2	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	35	0	0.2	1	0.024	0.084	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEPG2_LIVER	0.2	1	0.108	FALSE	164	806	69	479	0	FALSE	ACH-000739
HEPG2_LIVER	RP11-120D5.1--MID1	2	7	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	2	0.9	0.82	0.024	0.084	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEPG2_LIVER	0.82	0.9	0.108	FALSE	2	31	0	60	0	FALSE	ACH-000739
HEPG2_LIVER	RP11-96H19.1--RP11-446N19.1	2	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.024	0.084	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEPG2_LIVER	0.9	1	0.108	FALSE	407	2205	196	549	0	FALSE	ACH-000739
HEPG2_LIVER	FN1--DHRS2	3	1	FN1	30148	chr2:216251500:-	DHRS2	61769	chr14:24111515:+	INCL_NON_REF_SPLICE	YES	10231	5250	0	0	0.036	0.012	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,DHRS2->chr14:24099324-24114848:+,dehydrogenase/reductase_(SDR_family)_member_2	HEPG2_LIVER	0	0	0.048	FALSE	0	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	GPC3--GNAS	3	1	GPC3	1587	chrX:133119336:-	GNAS	28302	chr20:57466765:+	INCL_NON_REF_SPLICE	NO	8810	24	0	0.14	0.036	0.012	GPC3->Oncogene{Bushman},chrX:132669773-133119922:-,glypican_3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HEPG2_LIVER	0	0.14	0.048	FALSE	0	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	87	1	0.04	0.036	0.012	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEPG2_LIVER	0.04	1	0.048	TRUE	465	1949	224	605	0	FALSE	ACH-000739
HEPG2_LIVER	IGF2--FTL	3	0	IGF2	6236	chr11:2159953:-	FTL	17584	chr19:49468644:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	HEPG2_LIVER	1	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000739
HEPG2_LIVER	RP11-120D5.1--MID1	2	4	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	2	0.46	0.75	0.024	0.048	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEPG2_LIVER	0.46	0.75	0.072	FALSE	0	48	1	163	0	FALSE	ACH-000739
HEPG2_LIVER	RPL13--KDM2B	3	0	RPL13	1715	chr16:89627779:+	KDM2B	10019	chr12:122016788:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.036	0	RPL13->chr16:89627065-89630950:+,ribosomal_protein_L13,KDM2B->Oncogene{Bushman},chr12:121866900-122018920:-,lysine_demethylase_2B	HEPG2_LIVER	1	1	0.036	TRUE	0	0	0	1	0	TRUE	ACH-000739
HEPG2_LIVER	NRIP1--AF127936.7	2	3	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	4	9	0.56	0.36	0.024	0.036	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEPG2_LIVER	0.36	0.56	0.06	FALSE	25	145	6	90	0	FALSE	ACH-000739
HEPG2_LIVER	YWHAE--CRK	2	3	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	2051	105	0	0.05	0.024	0.036	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	HEPG2_LIVER	0	0.05	0.06	FALSE	6	50	7	115	0	FALSE	ACH-000739
HEPG2_LIVER	LYZ--CCT2	2	1	LYZ	3682	chr12:69746078:+	CCT2	12770	chr12:69983265:+	ONLY_REF_SPLICE	YES	9999	572	0	0.01	0.024	0.012	LYZ->chr12:69742121-69748014:+,lysozyme,CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+	HEPG2_LIVER	0	0.01	0.036	FALSE	1	6	0	5	1	FALSE	ACH-000739
HEPG2_LIVER	AFP--ALB	2	0	AFP	12270	chr4:74315184:+	ALB	35577	chr4:74285971:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	DGD_PARALOGS,PROTCLUST,LOCAL_REARRANGEMENT:+:[9726],AFP->alpha_fetoprotein,chr4:74296855-74321891:+,ALB->albumin,chr4:74262831-74287129:+	HEPG2_LIVER	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000739
HEPG2_LIVER	C17orf76-AS1--UBAP2	2	0	C17orf76-AS1	1593	chr17:16342728:+	UBAP2	31037	chr9:33948585:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	C17orf76-AS1->chr17:16342136-16381992:+,UBAP2->chr9:33921691-34048947:-,ubiquitin_associated_protein_2	HEPG2_LIVER	1	1	0.024	TRUE	0	0	0	2	0	TRUE	ACH-000739
HEPG2_LIVER	RABEP1--PABPC1	2	0	RABEP1	11707	chr17:5257785:+	PABPC1	33164	chr8:101730116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	RABEP1->Oncogene{Bushman},chr17:5185558-5289129:+,rabaptin,_RAB_GTPase_binding_effector_protein_1,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	HEPG2_LIVER	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000739
HEPG2_LIVER	RP11-307P5.1--SASH1	2	0	RP11-307P5.1	1117	chr6:147981955:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HEPG2_LIVER	1	1	0.024	TRUE	0	0	0	16	0	TRUE	ACH-000739
HEPG2_LIVER	GPC3--GNAS	1	3	GPC3	2783	chrX:133087077:-	GNAS	30548	chr20:57470667:+	ONLY_REF_SPLICE	YES	8957	1015	0	0	0.012	0.036	GPC3->Oncogene{Bushman},chrX:132669773-133119922:-,glypican_3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HEPG2_LIVER	0	0	0.048	FALSE	0	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	MANBA--UBE2D3	1	3	MANBA	9780	chr4:103610731:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	YES	57	629	0.07	0.01	0.012	0.036	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	HEPG2_LIVER	0.01	0.07	0.048	FALSE	6	5	0	8	0	FALSE	ACH-000739
HEPG2_LIVER	RP11-141M1.3--STARD13	1	3	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	NO	1	33	0.8	0.11	0.012	0.036	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HEPG2_LIVER	0.11	0.8	0.048	FALSE	141	264	50	91	0	FALSE	ACH-000739
HEPG2_LIVER	FNDC3B--PLD1	1	2	FNDC3B	6332	chr3:171851336:+	PLD1	49603	chr3:171507325:-	ONLY_REF_SPLICE	NO	437	13	0.01	0.19	0.012	0.024	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Coronary=1,Esophagus_-_Mucosa=1},FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B,PLD1->Oncogene{Bushman},chr3:171318195-171528740:-,phospholipase_D1	HEPG2_LIVER	0.01	0.19	0.036	FALSE	0	2	0	4	1	FALSE	ACH-000739
HEPG2_LIVER	MANBA--UBE2D3	1	2	MANBA	9780	chr4:103610731:-	UBE2D3	38146	chr4:103723795:-	ONLY_REF_SPLICE	NO	57	872	0.05	0	0.012	0.024	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	HEPG2_LIVER	0	0.05	0.036	FALSE	1	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	BCKDHB--RP11-250B2.3	1	1	BCKDHB	13350	chr6:80982938:+	RP11-250B2.3	23317	chr6:81172589:+	ONLY_REF_SPLICE	YES	56	4	0.03	0.33	0.012	0.012	NEIGHBORS[97074],BCKDHB->branched_chain_keto_acid_dehydrogenase_E1,_beta_polypeptide,chr6:80816364-81055987:+,RP11-250B2.3->chr6:81153061-81175644:+	HEPG2_LIVER	0.03	0.33	0.024	FALSE	0	0	0	2	0	FALSE	ACH-000739
HEPG2_LIVER	CPSF6--RP11-453F18__B.1	1	1	CPSF6	11046	chr12:69656342:+	RP11-453F18__B.1	24979	chrX:130928494:-	ONLY_REF_SPLICE	NO	211	3	0.01	0.4	0.012	0.012	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,RP11-453F18__B.1->chrX:130836678-130964671:-	HEPG2_LIVER	0.01	0.4	0.024	FALSE	0	0	0	2	0	FALSE	ACH-000739
HEPG2_LIVER	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	29	1	0.06	0.012	0.012	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HEPG2_LIVER	0.06	1	0.024	TRUE	15	36	8	26	0	FALSE	ACH-000739
HEPG2_LIVER	EDF1--TPRN	1	1	EDF1	2690	chr9:139757740:-	TPRN	13208	chr9:140087143:-	ONLY_REF_SPLICE	YES	853	25	0	0.07	0.012	0.012	{Klijn_CCL:Colo-Rectal=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,TPRN->chr9:140086069-140098645:-,taperin	HEPG2_LIVER	0	0.07	0.024	FALSE	0	4	0	4	0	FALSE	ACH-000739
HEPG2_LIVER	GALM--HNRNPLL	1	1	GALM	1442	chr2:38893493:+	HNRNPLL	19069	chr2:38818790:-	ONLY_REF_SPLICE	YES	376	151	0.01	0.01	0.012	0.012	LOCAL_INVERSION:+:-:[62324],GALM->chr2:38893052-38968379:+,galactose_mutarotase_(aldose_1-epimerase),HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	HEPG2_LIVER	0.01	0.01	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	GPC3--GNAS	1	1	GPC3	1621	chrX:133119302:-	GNAS	30548	chr20:57470667:+	ONLY_REF_SPLICE	YES	9495	1015	0	0	0.012	0.012	GPC3->Oncogene{Bushman},chrX:132669773-133119922:-,glypican_3,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HEPG2_LIVER	0	0	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	GRTP1--TMCO3	1	1	GRTP1	1370	chr13:114018077:-	TMCO3	21100	chr13:114174931:+	ONLY_REF_SPLICE	NO	171	223	0.01	0.01	0.012	0.012	GRTP1->chr13:113978505-114018446:-,growth_hormone_regulated_TBC_protein_1,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	HEPG2_LIVER	0.01	0.01	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	HAUS1--IER3IP1	1	1	HAUS1	2037	chr18:43685334:+	IER3IP1	18226	chr18:44683908:-	ONLY_REF_SPLICE	NO	171	548	0.01	0	0.012	0.012	HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+,IER3IP1->chr18:44661027-44702652:-,chr18:44681413-44702745:-,immediate_early_response_3_interacting_protein_1	HEPG2_LIVER	0	0.01	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	LMO7--UCHL3	1	1	LMO7	6139	chr13:76210026:+	UCHL3	56568	chr13:76178905:+	ONLY_REF_SPLICE	YES	0	118	1	0.02	0.012	0.012	{Klijn_CCL:Liver=1},LOCAL_REARRANGEMENT:+:[14485],LMO7->LIM_domain_7,Oncogene{Bushman},chr13:76194570-76434004:+,UCHL3->chr13:76123619-76180085:+,ubiquitin_C-terminal_hydrolase_L3	HEPG2_LIVER	0.02	1	0.024	TRUE	0	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	MGRN1--TRAP1	1	1	MGRN1	5323	chr16:4702825:+	TRAP1	32512	chr16:3740986:-	ONLY_REF_SPLICE	YES	171	178	0.01	0.01	0.012	0.012	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},MGRN1->chr16:4666494-4740975:+,mahogunin_ring_finger_1,TRAP1->Oncogene{Bushman},TNF_receptor_associated_protein_1,chr16:3701640-3767598:-	HEPG2_LIVER	0.01	0.01	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	PLXNA1--ZXDC	1	1	PLXNA1	8201	chr3:126726756:+	ZXDC	34035	chr3:126191148:-	ONLY_REF_SPLICE	YES	54	67	0.04	0.03	0.012	0.012	PLXNA1->chr3:126707437-126756235:+,plexin_A1,ZXDC->ZXD_family_zinc_finger_C,chr3:126156444-126194762:-	HEPG2_LIVER	0.03	0.04	0.024	TRUE	0	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	PPL--SEC14L5	1	1	PPL	5706	chr16:4952407:-	SEC14L5	28506	chr16:5037558:+	ONLY_REF_SPLICE	YES	16	2	0.11	0.5	0.012	0.012	{Klijn_CCL:Lung=1,Liver=1},NEIGHBORS_OVERLAP:-:+:[2424],PPL->chr16:4932508-5010742:-,periplakin,SEC14L5->SEC14_like_lipid_binding_5,chr16:5008318-5069159:+	HEPG2_LIVER	0.11	0.5	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000739
HEPG2_LIVER	RP11-307P5.1--SASH1	1	1	RP11-307P5.1	4371	chr6:148054947:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	NO	69	6	0.03	0.25	0.012	0.012	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HEPG2_LIVER	0.03	0.25	0.024	TRUE	0	0	0	11	0	FALSE	ACH-000739
HEPG2_LIVER	RPS3--ALB	1	1	RPS3	2292	chr11:75111821:+	ALB	14160	chr4:74270086:+	ONLY_REF_SPLICE	YES	4375	32	0	0.06	0.012	0.012	GTEx&tcga_normals:2/3694=0.05%,RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,ALB->albumin,chr4:74262831-74287129:+	HEPG2_LIVER	0	0.06	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000739
LOUNH91_LUNG	TNFAIP8--HSD17B4	68	61	TNFAIP8	1216	chr5:118604602:+	HSD17B4	33119	chr5:118832238:+	ONLY_REF_SPLICE	YES	16	49	0.89	0.72	0.9848	0.8834	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	LOUNH91_LUNG	0.72	0.89	1.8682	FALSE	0	0	0	1	0	FALSE	ACH-000176
LOUNH91_LUNG	TIMM23B--LINC00843	61	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8834	0.2896	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LOUNH91_LUNG	1	1	1.173	TRUE	508	994	45	981	0	FALSE	ACH-000176
LOUNH91_LUNG	CD63--TGFBI	41	0	CD63	3509	chr12:56120983:-	TGFBI	17625	chr5:135388691:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5938	0	CD63->CD63_molecule,chr12:56119107-56123491:-,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced	LOUNH91_LUNG	1	1	0.5938	TRUE	0	0	0	14	0	TRUE	ACH-000176
LOUNH91_LUNG	TIMM23--RP11-464F9.1	34	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	172	4	0.18	0.9	0.4924	0.0434	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LOUNH91_LUNG	0.18	0.9	0.5358	TRUE	519	3926	326	965	0	FALSE	ACH-000176
LOUNH91_LUNG	TNFAIP8--HSD17B4	7	69	TNFAIP8	1216	chr5:118604602:+	HSD17B4	31163	chr5:118829513:+	ONLY_REF_SPLICE	YES	16	57	0.83	0.57	0.1014	0.9993	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	LOUNH91_LUNG	0.57	0.83	1.1007	FALSE	0	0	0	1	0	FALSE	ACH-000176
LOUNH91_LUNG	RP11-680G10.1--GSE1	20	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2896	0.0869	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LOUNH91_LUNG	1	1	0.3765	TRUE	458	1351	185	561	0	FALSE	ACH-000176
LOUNH91_LUNG	RP11-680G10.1--GSE1	21	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	13	1	0.64	0.3041	0.029	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LOUNH91_LUNG	0.64	1	0.3331	TRUE	465	1949	224	605	0	FALSE	ACH-000176
LOUNH91_LUNG	SLC16A1--RP11-31F15.2	17	6	SLC16A1	1979	chr1:113498657:-	RP11-31F15.2	18758	chr1:113556461:-	ONLY_REF_SPLICE	YES	160	0	0.13	1	0.2462	0.0869	LOCAL_REARRANGEMENT:-:[54674],SLC16A1->Oncogene{Bushman},chr1:113454469-113499635:-,solute_carrier_family_16_member_1,RP11-31F15.2->chr1:113554309-113615727:-	LOUNH91_LUNG	0.13	1	0.3331	TRUE	0	0	0	1	0	TRUE	ACH-000176
LOUNH91_LUNG	MT-CO3--MT-ATP6	8	41	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.92	0.1159	0.5938	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LOUNH91_LUNG	0.92	1	0.7097	FALSE	189	492	56	216	0	FALSE	ACH-000176
LOUNH91_LUNG	TNFAIP8--HSD17B4	1	62	TNFAIP8	1216	chr5:118604602:+	HSD17B4	32292	chr5:118831411:+	ONLY_REF_SPLICE	YES	16	54	0.8	0.54	0.0145	0.8979	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	LOUNH91_LUNG	0.54	0.8	0.9124	FALSE	0	0	0	1	0	FALSE	ACH-000176
LOUNH91_LUNG	CDH4--NME1	14	5	CDH4	5876	chr20:60348238:+	NME1	30089	chr17:49237341:+	ONLY_REF_SPLICE	YES	10	1303	0.66	0.01	0.2027	0.0724	CDH4->cadherin_4,chr20:59827482-60515673:+,NME1->NME/NM23_nucleoside_diphosphate_kinase_1,chr17:49230897-49239789:+	LOUNH91_LUNG	0.01	0.66	0.2751	TRUE	0	0	0	1	0	FALSE	ACH-000176
LOUNH91_LUNG	MT-CO3--MT-ATP6	4	42	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	0	38	1	0.55	0.0579	0.6082	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LOUNH91_LUNG	0.55	1	0.6661	FALSE	189	492	56	216	0	FALSE	ACH-000176
LOUNH91_LUNG	MT-ND6--MT-TE	14	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.2027	0.0145	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LOUNH91_LUNG	0.94	1	0.2172	FALSE	499	1288	110	792	0	FALSE	ACH-000176
LOUNH91_LUNG	MT-CO3--MT-ATP6	4	40	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	1	3	0.98	0.94	0.0579	0.5793	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LOUNH91_LUNG	0.94	0.98	0.6372	FALSE	189	492	56	216	0	FALSE	ACH-000176
LOUNH91_LUNG	PLXDC1--TAF13	14	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2027	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	LOUNH91_LUNG	1	1	0.2027	TRUE	7	10	0	216	0	FALSE	ACH-000176
LOUNH91_LUNG	SERPINE1--MT-ND4	12	4	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	9230	11825	0	0	0.1738	0.0579	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	LOUNH91_LUNG	0	0	0.2317	FALSE	1	0	0	29	0	FALSE	ACH-000176
LOUNH91_LUNG	TGFBI--POSTN	12	0	TGFBI	6352	chr5:135382704:+	POSTN	28054	chr13:38161065:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1738	0	PROTCLUST,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced,POSTN->chr13:38136720-38172981:-,periostin	LOUNH91_LUNG	1	1	0.1738	TRUE	0	0	0	1	0	TRUE	ACH-000176
LOUNH91_LUNG	C15orf57--CBX3	7	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	36	28	0.37	0.43	0.1014	0.2027	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LOUNH91_LUNG	0.37	0.43	0.3041	TRUE	267	562	48	632	0	FALSE	ACH-000176
LOUNH91_LUNG	MT-CO3--MT-ATP6	4	26	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	NO	1	1	0.97	0.97	0.0579	0.3765	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LOUNH91_LUNG	0.97	0.97	0.4344	FALSE	189	492	56	216	0	FALSE	ACH-000176
LOUNH91_LUNG	MT-CO3--MT-ATP6	7	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1014	0.0869	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LOUNH91_LUNG	1	1	0.1883	FALSE	189	492	56	216	0	FALSE	ACH-000176
LOUNH91_LUNG	CTD-2544M6.1--LINC00923	8	0	CTD-2544M6.1	4364	chr15:98589896:-	LINC00923	10269	chr15:98301891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1159	0	CTD-2544M6.1->chr15:98589896-98836406:-,LINC00923->chr15:98285448-98417780:-,long_intergenic_non-protein_coding_RNA_923	LOUNH91_LUNG	1	1	0.1159	TRUE	0	3	0	6	3	TRUE	ACH-000176
LOUNH91_LUNG	CTD-2337A12.1--CAST	7	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1014	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	LOUNH91_LUNG	1	1	0.1014	TRUE	347	1186	183	220	0	FALSE	ACH-000176
LOUNH91_LUNG	MT-ND6--MT-TE	6	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0869	0.0579	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LOUNH91_LUNG	0.91	1	0.1448	FALSE	499	1288	110	792	0	FALSE	ACH-000176
LOUNH91_LUNG	RP11-123O10.4--GRIP1	6	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0869	0.029	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LOUNH91_LUNG	1	1	0.1159	FALSE	416	2512	207	587	0	FALSE	ACH-000176
LOUNH91_LUNG	NRIP1--AF127936.7	6	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0869	0.0145	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LOUNH91_LUNG	0.88	1	0.1014	FALSE	292	1546	117	613	0	FALSE	ACH-000176
LOUNH91_LUNG	SERPINE1--MT-ND4	5	5	SERPINE1	4787	chr7:100775280:+	MT-ND4	14131	chrM:11260:+	INCL_NON_REF_SPLICE	YES	8923	11403	0	0	0.0724	0.0724	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	LOUNH91_LUNG	0	0	0.1448	FALSE	1	0	0	29	0	FALSE	ACH-000176
LOUNH91_LUNG	MT-ND4--MT-ATP6	6	0	MT-ND4	1471	chrM:11230:+	MT-ATP6	5934	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0869	0	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LOUNH91_LUNG	1	1	0.0869	FALSE	21	137	19	8	0	FALSE	ACH-000176
LOUNH91_LUNG	MT-CO3--MT-ATP6	3	10	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0434	0.1448	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LOUNH91_LUNG	0.93	1	0.1882	FALSE	189	492	56	216	0	FALSE	ACH-000176
LOUNH91_LUNG	FTH1--ACTG1	5	1	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	571	0	0.01	1	0.0724	0.0145	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	LOUNH91_LUNG	0.01	1	0.0869	FALSE	0	0	0	64	0	FALSE	ACH-000176
LOUNH91_LUNG	SERPINE1--MT-ND4	4	5	SERPINE1	4767	chr7:100775260:+	MT-ND4	14110	chrM:11239:+	INCL_NON_REF_SPLICE	YES	9306	11447	0	0	0.0579	0.0724	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	LOUNH91_LUNG	0	0	0.1303	FALSE	1	0	0	29	0	FALSE	ACH-000176
LOUNH91_LUNG	MT-CO3--MT-ATP6	4	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0579	0.029	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LOUNH91_LUNG	1	1	0.0869	FALSE	189	492	56	216	0	FALSE	ACH-000176
LOUNH91_LUNG	MT-ND6--MT-TE	3	6	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0434	0.0869	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LOUNH91_LUNG	1	1	0.1303	FALSE	499	1288	110	792	0	FALSE	ACH-000176
LOUNH91_LUNG	SLC16A1--RP11-31F15.2	3	6	SLC16A1	1979	chr1:113498657:-	RP11-31F15.2	18762	chr1:113556457:-	INCL_NON_REF_SPLICE	YES	160	0	0.05	1	0.0434	0.0869	LOCAL_REARRANGEMENT:-:[54674],SLC16A1->Oncogene{Bushman},chr1:113454469-113499635:-,solute_carrier_family_16_member_1,RP11-31F15.2->chr1:113554309-113615727:-	LOUNH91_LUNG	0.05	1	0.1303	TRUE	0	0	0	1	0	TRUE	ACH-000176
LOUNH91_LUNG	MT-ND6--MT-TE	3	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0434	0.0724	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LOUNH91_LUNG	1	1	0.1158	FALSE	499	1288	110	792	0	FALSE	ACH-000176
LOUNH91_LUNG	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	59	1	0.08	0.0579	0.0145	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LOUNH91_LUNG	0.08	1	0.0724	FALSE	16	356	14	466	0	FALSE	ACH-000176
LOUNH91_LUNG	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0434	0.0724	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LOUNH91_LUNG	1	1	0.1158	FALSE	407	2205	196	549	0	FALSE	ACH-000176
LOUNH91_LUNG	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0434	0.0724	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LOUNH91_LUNG	1	1	0.1158	FALSE	515	4851	409	746	0	FALSE	ACH-000176
LOUNH91_LUNG	SLC1A5--MT-ND4L	4	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0579	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LOUNH91_LUNG	1	1	0.0579	FALSE	0	0	0	189	0	FALSE	ACH-000176
LOUNH91_LUNG	NRIP1--AF127936.7	3	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	11	0	0.35	1	0.0434	0.0434	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LOUNH91_LUNG	0.35	1	0.0868	FALSE	164	806	69	479	0	FALSE	ACH-000176
LOUNH91_LUNG	RP11-123O10.4--GRIP1	3	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0434	0.029	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LOUNH91_LUNG	1	1	0.0724	FALSE	93	270	15	244	0	FALSE	ACH-000176
LOUNH91_LUNG	MT-ND4--MT-ATP6	3	1	MT-ND4	1209	chrM:10968:+	MT-ATP6	5317	chrM:8465:+	INCL_NON_REF_SPLICE	NO	9264	0	0	1	0.0434	0.0145	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LOUNH91_LUNG	0	1	0.0579	FALSE	21	91	18	8	0	FALSE	ACH-000176
LOUNH91_LUNG	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0.0724	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LOUNH91_LUNG	1	1	0.1014	FALSE	467	2173	244	435	0	FALSE	ACH-000176
LOUNH91_LUNG	TGFBI--POSTN	3	1	TGFBI	13990	chr5:135392441:+	POSTN	28780	chr13:38160339:-	INCL_NON_REF_SPLICE	YES	6339	5311	0	0	0.0434	0.0145	PROTCLUST,TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced,POSTN->chr13:38136720-38172981:-,periostin	LOUNH91_LUNG	0	0	0.0579	FALSE	0	0	0	1	0	FALSE	ACH-000176
LOUNH91_LUNG	CDC73--AXDND1	3	0	CDC73	9616	chr1:193117095:+	AXDND1	49423	chr1:179494469:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0434	0	CDC73->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cell_division_cycle_73,chr1:193091147-193223031:+,AXDND1->axonemal_dynein_light_chain_domain_containing_1,chr1:179334855-179523870:+	LOUNH91_LUNG	1	1	0.0434	TRUE	0	0	0	1	0	TRUE	ACH-000176
LOUNH91_LUNG	MT-ND4--MT-ATP6	3	0	MT-ND4	1234	chrM:10993:+	MT-ATP6	5773	chrM:8921:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0434	0	LOCAL_REARRANGEMENT:+:[1553],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LOUNH91_LUNG	1	1	0.0434	FALSE	21	91	18	8	0	FALSE	ACH-000176
LOUNH91_LUNG	PFKL--MT-ND4L	3	0	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0434	0	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LOUNH91_LUNG	1	1	0.0434	FALSE	0	0	0	33	0	FALSE	ACH-000176
LOUNH91_LUNG	RP11-155G15.2--RP11-1E3.1	3	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0434	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	LOUNH91_LUNG	1	1	0.0434	FALSE	46	201	11	112	0	FALSE	ACH-000176
LOUNH91_LUNG	RP11-344E13.3--UBBP4	2	3	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0.0434	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	LOUNH91_LUNG	1	1	0.0724	TRUE	23	13	0	54	0	FALSE	ACH-000176
LOUNH91_LUNG	CDH4--NME1	1	5	CDH4	5876	chr20:60348238:+	NME1	28193	chr17:49233012:+	ONLY_REF_SPLICE	YES	10	70	0.38	0.08	0.0145	0.0724	CDH4->cadherin_4,chr20:59827482-60515673:+,NME1->NME/NM23_nucleoside_diphosphate_kinase_1,chr17:49230897-49239789:+	LOUNH91_LUNG	0.08	0.38	0.0869	TRUE	0	0	0	1	0	TRUE	ACH-000176
LOUNH91_LUNG	DPH6-AS1--RP11-684B21.1	2	1	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.029	0.0145	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	LOUNH91_LUNG	0.43	1	0.0435	TRUE	17	119	17	33	0	FALSE	ACH-000176
LOUNH91_LUNG	XKR9--RP11-326E22.1	2	1	XKR9	8344	chr8:71619388:+	RP11-326E22.1	21087	chr8:72111375:+	ONLY_REF_SPLICE	YES	21	0	0.12	1	0.029	0.0145	GTEx_FI:{Brain=[count:4=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Liver=[count:1=pct:0.8]},XKR9->XK_related_9,chr8:71581600-71702606:+,RP11-326E22.1->chr8:72067692-72116458:+	LOUNH91_LUNG	0.12	1	0.0435	TRUE	5	29	0	13	0	FALSE	ACH-000176
LOUNH91_LUNG	CLIC4--ATP1B1	2	0	CLIC4	1269	chr1:25072116:+	ATP1B1	19595	chr1:169094122:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,ATP1B1->ATPase_Na+/K+_transporting_subunit_beta_1,chr1:169074935-169101960:+	LOUNH91_LUNG	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000176
LOUNH91_LUNG	MB21D2--FGF12	2	0	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	LOUNH91_LUNG	1	1	0.029	FALSE	0	17	0	46	0	FALSE	ACH-000176
LOUNH91_LUNG	RP11-313P13.3--BAZ1B	2	0	RP11-313P13.3	11471	chr7:72515008:+	BAZ1B	27180	chr7:72884813:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	RP11-313P13.3->chr7:72476064-72555749:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	LOUNH91_LUNG	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000176
LOUNH91_LUNG	RP11-59N23.1--CMAS	2	0	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	LOUNH91_LUNG	1	1	0.029	TRUE	21	102	17	28	0	FALSE	ACH-000176
LOUNH91_LUNG	SERTAD1--CAPN2	2	0	SERTAD1	1159	chr19:40931774:-	CAPN2	21947	chr1:223946972:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.029	0	SERTAD1->SERTA_domain_containing_1,chr19:40927499-40931932:-,CAPN2->calpain_2,chr1:223889295-223963720:+	LOUNH91_LUNG	1	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000176
LOUNH91_LUNG	RSBN1L-AS1--PTPN12	1	1	RSBN1L-AS1	1370	chr7:77325213:-	PTPN12	27587	chr7:77247797:+	ONLY_REF_SPLICE	YES	47	141	0.04	0.01	0.0145	0.0145	LOCAL_INVERSION:-:+:[17589],RSBN1L-AS1->chr7:77286977-77325582:-,PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12	LOUNH91_LUNG	0.01	0.04	0.029	FALSE	0	0	0	1	0	FALSE	ACH-000176
CORL88_LUNG	SGTB--NLN	139	120	SGTB	5415	chr5:65004316:-	NLN	25804	chr5:65077088:+	ONLY_REF_SPLICE	YES	73	179	0.78	0.59	1.9955	1.7227	NEIGHBORS_OVERLAP:-:+:[839],SGTB->chr5:64961755-65018862:-,small_glutamine_rich_tetratricopeptide_repeat_containing_beta,NLN->chr5:65018023-65167553:+,neurolysin	CORL88_LUNG	0.59	0.78	3.7182	FALSE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	ACOT7--NPHP4	141	85	ACOT7	18465	chr1:6341162:-	NPHP4	42083	chr1:5947526:-	ONLY_REF_SPLICE	YES	22	11	0.91	0.95	2.0242	1.2202	{Klijn_CCL:Lung=1},ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-,NPHP4->chr1:5922871-6052533:-,nephronophthisis_4	CORL88_LUNG	0.91	0.95	3.2444	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	CCSER2--RGR	88	180	CCSER2	1223	chr10:86088564:+	RGR	28175	chr10:86007347:+	ONLY_REF_SPLICE	YES	27	0	0.91	1	1.2633	2.584	LOCAL_REARRANGEMENT:+:[68626],CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,RGR->chr10:86004809-86019716:+,retinal_G_protein_coupled_receptor	CORL88_LUNG	0.91	1	3.8473	TRUE	0	1	0	1	1	TRUE	ACH-000508
CORL88_LUNG	CCSER2--RGR	73	148	CCSER2	1223	chr10:86088564:+	RGR	28225	chr10:86007397:+	ONLY_REF_SPLICE	YES	27	32	0.89	0.87	1.048	2.1247	LOCAL_REARRANGEMENT:+:[68626],CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,RGR->chr10:86004809-86019716:+,retinal_G_protein_coupled_receptor	CORL88_LUNG	0.87	0.89	3.1727	TRUE	0	1	0	1	1	TRUE	ACH-000508
CORL88_LUNG	NLN--MAP2K3	78	82	NLN	5852	chr5:65073361:+	MAP2K3	41338	chr17:21208363:+	ONLY_REF_SPLICE	YES	112	77	0.59	0.68	1.1198	1.1772	{Klijn_CCL:Lung=1},NLN->chr5:65018023-65167553:+,neurolysin,MAP2K3->chr17:21187984-21218552:+,mitogen-activated_protein_kinase_kinase_3	CORL88_LUNG	0.59	0.68	2.297	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	KANSL1--ARL17B	53	42	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	71	83	0.57	0.53	0.7609	0.6029	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	CORL88_LUNG	0.53	0.57	1.3638	TRUE	181	1564	124	196	0	FALSE	ACH-000508
CORL88_LUNG	NLN--MAP2K3	44	54	NLN	5852	chr5:65073361:+	MAP2K3	42871	chr17:21215454:+	ONLY_REF_SPLICE	YES	112	85	0.47	0.54	0.6317	0.7752	{Klijn_CCL:Lung=1},NLN->chr5:65018023-65167553:+,neurolysin,MAP2K3->chr17:21187984-21218552:+,mitogen-activated_protein_kinase_kinase_3	CORL88_LUNG	0.47	0.54	1.4069	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	CCSER2--RGR	46	43	CCSER2	1223	chr10:86088564:+	RGR	32171	chr10:86012613:+	ONLY_REF_SPLICE	YES	27	171	0.77	0.34	0.6604	0.6173	LOCAL_REARRANGEMENT:+:[68626],CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,RGR->chr10:86004809-86019716:+,retinal_G_protein_coupled_receptor	CORL88_LUNG	0.34	0.77	1.2777	TRUE	0	1	0	1	1	TRUE	ACH-000508
CORL88_LUNG	TIMM23B--LINC00843	46	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6604	0.3589	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CORL88_LUNG	1	1	1.0193	TRUE	508	994	45	981	0	FALSE	ACH-000508
CORL88_LUNG	ZNF654--HMGB2	51	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7321	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CORL88_LUNG	1	1	0.7321	TRUE	0	0	0	518	0	FALSE	ACH-000508
CORL88_LUNG	RERE--SLC25A33	48	11	RERE	1484	chr1:8877219:-	SLC25A33	42193	chr1:9613684:+	ONLY_REF_SPLICE	YES	0	6	1	0.91	0.6891	0.1579	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC25A33->chr1:9599541-9645237:+,solute_carrier_family_25_member_33	CORL88_LUNG	0.91	1	0.847	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	AP003900.6--AC011718.2	41	26	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	3	0	0.96	1	0.5886	0.3733	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	CORL88_LUNG	0.96	1	0.9619	TRUE	0	5	0	45	5	FALSE	ACH-000508
CORL88_LUNG	LINC01014--KCNMB2	29	5	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	2	28	0.94	0.55	0.4163	0.0718	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	CORL88_LUNG	0.55	0.94	0.4881	FALSE	11	60	26	37	0	FALSE	ACH-000508
CORL88_LUNG	PDS5B--RP11-29G8.3	26	6	PDS5B	1167	chr13:33160730:+	RP11-29G8.3	54270	chr13:76195899:+	ONLY_REF_SPLICE	YES	6	0	0.84	1	0.3733	0.0861	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,RP11-29G8.3->chr13:76123909-76381256:+	CORL88_LUNG	0.84	1	0.4594	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	CCSER2--RGR	10	66	CCSER2	1223	chr10:86088564:+	RGR	29506	chr10:86008678:+	ONLY_REF_SPLICE	YES	27	161	0.74	0.32	0.1436	0.9475	LOCAL_REARRANGEMENT:+:[68626],CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,RGR->chr10:86004809-86019716:+,retinal_G_protein_coupled_receptor	CORL88_LUNG	0.32	0.74	1.0911	TRUE	0	1	0	1	1	TRUE	ACH-000508
CORL88_LUNG	RP11-123O10.4--GRIP1	22	12	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.3158	0.1723	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CORL88_LUNG	0.97	1	0.4881	FALSE	416	2512	207	587	0	FALSE	ACH-000508
CORL88_LUNG	TIMM23--RP11-464F9.1	23	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	259	0	0.09	1	0.3302	0.0574	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CORL88_LUNG	0.09	1	0.3876	TRUE	519	3926	326	965	0	FALSE	ACH-000508
CORL88_LUNG	PDS5B--RP11-29G8.3	20	6	PDS5B	1167	chr13:33160730:+	RP11-29G8.3	53194	chr13:76169051:+	ONLY_REF_SPLICE	YES	6	1	0.81	0.96	0.2871	0.0861	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,RP11-29G8.3->chr13:76123909-76381256:+	CORL88_LUNG	0.81	0.96	0.3732	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	SGTB--NLN	8	53	SGTB	4345	chr5:65008788:-	NLN	25804	chr5:65077088:+	ONLY_REF_SPLICE	YES	69	179	0.47	0.25	0.1148	0.7609	NEIGHBORS_OVERLAP:-:+:[839],SGTB->chr5:64961755-65018862:-,small_glutamine_rich_tetratricopeptide_repeat_containing_beta,NLN->chr5:65018023-65167553:+,neurolysin	CORL88_LUNG	0.25	0.47	0.8757	FALSE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	RERE--SLC25A33	16	18	RERE	2669	chr1:8852463:-	SLC25A33	42193	chr1:9613684:+	ONLY_REF_SPLICE	YES	3	6	0.92	0.85	0.2297	0.2584	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC25A33->chr1:9599541-9645237:+,solute_carrier_family_25_member_33	CORL88_LUNG	0.85	0.92	0.4881	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	AL109763.2--TMPRSS15	16	11	AL109763.2	6027	chr21:19961845:-	TMPRSS15	13875	chr21:19770646:-	ONLY_REF_SPLICE	YES	40	3	0.4	0.9	0.2297	0.1579	NEIGHBORS[75386],AL109763.2->chr21:19933583-20132321:-,TMPRSS15->chr21:19641433-19858197:-,transmembrane_protease,_serine_15	CORL88_LUNG	0.4	0.9	0.3876	FALSE	0	0	0	2	0	FALSE	ACH-000508
CORL88_LUNG	MT-TC--MT-TY	18	0	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2584	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	CORL88_LUNG	1	1	0.2584	FALSE	51	280	19	36	0	FALSE	ACH-000508
CORL88_LUNG	MT-ND6--MT-TE	17	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.244	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL88_LUNG	1	1	0.244	FALSE	499	1288	110	792	0	FALSE	ACH-000508
CORL88_LUNG	RP11-319G9.5--WWOX	16	4	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	1	53	0.95	0.27	0.2297	0.0574	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	CORL88_LUNG	0.27	0.95	0.2871	FALSE	154	425	28	76	0	FALSE	ACH-000508
CORL88_LUNG	CTD-2008L17.1--RP11-456O19.2	14	11	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.201	0.1579	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	CORL88_LUNG	1	1	0.3589	FALSE	20	187	4	79	0	FALSE	ACH-000508
CORL88_LUNG	MAF--RP11-679B19.2	15	5	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2153	0.0718	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	CORL88_LUNG	1	1	0.2871	TRUE	48	25	3	38	0	FALSE	ACH-000508
CORL88_LUNG	PDS5B--RP11-29G8.3	13	5	PDS5B	1167	chr13:33160730:+	RP11-29G8.3	56426	chr13:76287318:+	ONLY_REF_SPLICE	YES	6	5	0.75	0.78	0.1866	0.0718	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,RP11-29G8.3->chr13:76123909-76381256:+	CORL88_LUNG	0.75	0.78	0.2584	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	CAPZA2--TPK1	12	5	CAPZA2	3371	chr7:116502704:+	TPK1	27650	chr7:144463044:-	ONLY_REF_SPLICE	YES	22	0	0.44	1	0.1723	0.0718	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,TPK1->Oncogene{Bushman},chr7:144149034-144533488:-,thiamin_pyrophosphokinase_1	CORL88_LUNG	0.44	1	0.2441	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	PDS5B--RP11-29G8.3	12	4	PDS5B	1167	chr13:33160730:+	RP11-29G8.3	57497	chr13:76301165:+	ONLY_REF_SPLICE	YES	6	15	0.73	0.52	0.1723	0.0574	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,RP11-29G8.3->chr13:76123909-76381256:+	CORL88_LUNG	0.52	0.73	0.2297	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	RP11-120D5.1--MID1	11	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	23	0.85	0.42	0.1579	0.0861	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL88_LUNG	0.42	0.85	0.244	FALSE	16	356	14	466	0	FALSE	ACH-000508
CORL88_LUNG	JPH1--ZMYM6	11	4	JPH1	3180	chr8:75227096:-	ZMYM6	15371	chr1:35486068:-	ONLY_REF_SPLICE	YES	60	102	0.2	0.13	0.1579	0.0574	JPH1->chr8:75146935-75233563:-,junctophilin_1,ZMYM6->chr1:35447134-35497342:-,chr1:35449523-35497569:-,zinc_finger_MYM-type_containing_6	CORL88_LUNG	0.13	0.2	0.2153	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1723	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	CORL88_LUNG	1	1	0.1723	TRUE	46	1352	75	139	0	FALSE	ACH-000508
CORL88_LUNG	LINC01014--KCNMB2	10	7	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	2	29	0.89	0.37	0.1436	0.1005	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	CORL88_LUNG	0.37	0.89	0.2441	FALSE	12	33	18	33	0	FALSE	ACH-000508
CORL88_LUNG	C15orf57--CBX3	9	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	28	65	0.4	0.23	0.1292	0.1436	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CORL88_LUNG	0.23	0.4	0.2728	TRUE	267	562	48	632	0	FALSE	ACH-000508
CORL88_LUNG	CAPZA2--TPK1	10	5	CAPZA2	3371	chr7:116502704:+	TPK1	26164	chr7:144532711:-	ONLY_REF_SPLICE	YES	22	0	0.41	1	0.1436	0.0718	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,TPK1->Oncogene{Bushman},chr7:144149034-144533488:-,thiamin_pyrophosphokinase_1	CORL88_LUNG	0.41	1	0.2154	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	ARHGAP24--NENF	9	8	ARHGAP24	6161	chr4:86643125:+	NENF	31904	chr1:212617681:+	ONLY_REF_SPLICE	YES	2	84	0.89	0.17	0.1292	0.1148	{Klijn_CCL:Lung=1},ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+,NENF->chr1:212606229-212619714:+,neudesin_neurotrophic_factor	CORL88_LUNG	0.17	0.89	0.244	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	PRKAA1--EGFLAM	9	7	PRKAA1	6692	chr5:40769518:-	EGFLAM	30659	chr5:38409106:+	ONLY_REF_SPLICE	YES	144	0	0.1	1	0.1292	0.1005	PRKAA1->chr5:40759481-40798476:-,protein_kinase_AMP-activated_catalytic_subunit_alpha_1,EGFLAM->EGF_like,_fibronectin_type_III_and_laminin_G_domains,chr5:38258511-38465123:+	CORL88_LUNG	0.1	1	0.2297	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	ACOT7--NPHP4	7	14	ACOT7	18465	chr1:6341162:-	NPHP4	46665	chr1:5940299:-	ONLY_REF_SPLICE	YES	22	50	0.49	0.3	0.1005	0.201	{Klijn_CCL:Lung=1},ACOT7->acyl-CoA_thioesterase_7,chr1:6324329-6454451:-,NPHP4->chr1:5922871-6052533:-,nephronophthisis_4	CORL88_LUNG	0.3	0.49	0.3015	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	MT-ND6--MT-TE	10	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.1436	0.0144	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL88_LUNG	0.92	1	0.158	FALSE	499	1288	110	792	0	FALSE	ACH-000508
CORL88_LUNG	RP4-565E6.1--HYDIN	7	13	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	5	1	0.8	0.1005	0.1866	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	CORL88_LUNG	0.8	1	0.2871	TRUE	456	1387	91	133	0	FALSE	ACH-000508
CORL88_LUNG	AP003900.6--AC011718.2	9	4	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.1292	0.0574	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	CORL88_LUNG	0.81	1	0.1866	TRUE	0	3	0	38	3	FALSE	ACH-000508
CORL88_LUNG	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1436	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CORL88_LUNG	1	1	0.1436	TRUE	0	0	0	434	0	FALSE	ACH-000508
CORL88_LUNG	GDAP1--RP11-758M4.1	8	5	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	184	0	0.07	1	0.1148	0.0718	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	CORL88_LUNG	0.07	1	0.1866	TRUE	7	28	0	43	0	FALSE	ACH-000508
CORL88_LUNG	NLN--MAP2K3	4	20	NLN	5852	chr5:65073361:+	MAP2K3	44011	chr17:21216804:+	ONLY_REF_SPLICE	YES	112	118	0.18	0.17	0.0574	0.2871	{Klijn_CCL:Lung=1},NLN->chr5:65018023-65167553:+,neurolysin,MAP2K3->chr17:21187984-21218552:+,mitogen-activated_protein_kinase_kinase_3	CORL88_LUNG	0.17	0.18	0.3445	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	RP11-475J5.8--MT-ATP6	9	0	RP11-475J5.8	1074	chr5:99387547:-	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1292	0	RP11-475J5.8->chr5:99386837-99387620:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CORL88_LUNG	1	1	0.1292	FALSE	0	0	0	4	0	FALSE	ACH-000508
CORL88_LUNG	SGTB--NLN	2	27	SGTB	5415	chr5:65004316:-	NLN	26965	chr5:65081602:+	ONLY_REF_SPLICE	YES	73	130	0.28	0.18	0.0287	0.3876	NEIGHBORS_OVERLAP:-:+:[839],SGTB->chr5:64961755-65018862:-,small_glutamine_rich_tetratricopeptide_repeat_containing_beta,NLN->chr5:65018023-65167553:+,neurolysin	CORL88_LUNG	0.18	0.28	0.4163	FALSE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	MT-TC--MT-TY	8	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1148	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	CORL88_LUNG	1	1	0.1148	FALSE	51	280	19	36	0	FALSE	ACH-000508
CORL88_LUNG	NRIP1--AF127936.7	8	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1148	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CORL88_LUNG	1	1	0.1148	FALSE	292	1546	117	613	0	FALSE	ACH-000508
CORL88_LUNG	C15orf57--CBX3	6	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	28	67	0.3	0.15	0.0861	0.0861	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CORL88_LUNG	0.15	0.3	0.1722	TRUE	267	562	48	632	0	FALSE	ACH-000508
CORL88_LUNG	MT-ND6--MT-TE	7	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1005	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL88_LUNG	1	1	0.1005	FALSE	499	1288	110	792	0	FALSE	ACH-000508
CORL88_LUNG	RERE--SLC25A33	2	18	RERE	5242	chr1:8763114:-	SLC25A33	42193	chr1:9613684:+	ONLY_REF_SPLICE	YES	15	6	0.57	0.77	0.0287	0.2584	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,SLC25A33->chr1:9599541-9645237:+,solute_carrier_family_25_member_33	CORL88_LUNG	0.57	0.77	0.2871	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	KANSL1--ARL17B	3	13	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	81	83	0.16	0.16	0.0431	0.1866	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	CORL88_LUNG	0.16	0.16	0.2297	TRUE	105	90	7	93	0	FALSE	ACH-000508
CORL88_LUNG	RP11-120D5.1--MID1	5	5	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	8	23	0.56	0.3	0.0718	0.0718	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL88_LUNG	0.3	0.56	0.1436	FALSE	0	48	1	163	0	FALSE	ACH-000508
CORL88_LUNG	LDLRAD3--PRR5L	4	8	LDLRAD3	5673	chr11:36120011:+	PRR5L	17578	chr11:36317840:+	INCL_NON_REF_SPLICE	YES	51	0	0.19	1	0.0574	0.1148	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	CORL88_LUNG	0.19	1	0.1722	FALSE	0	52	1	15	0	FALSE	ACH-000508
CORL88_LUNG	AL109763.2--TMPRSS15	4	7	AL109763.2	3701	chr21:20110242:-	TMPRSS15	13875	chr21:19770646:-	ONLY_REF_SPLICE	YES	39	3	0.22	0.79	0.0574	0.1005	NEIGHBORS[75386],AL109763.2->chr21:19933583-20132321:-,TMPRSS15->chr21:19641433-19858197:-,transmembrane_protease,_serine_15	CORL88_LUNG	0.22	0.79	0.1579	FALSE	0	3	0	3	0	FALSE	ACH-000508
CORL88_LUNG	BAGE2--AP003900.6	5	3	BAGE2	12991	chr21:11021110:-	AP003900.6	25223	chr21:11173891:+	ONLY_REF_SPLICE	YES	16	4	0.33	0.67	0.0718	0.0431	LOCAL_INVERSION:-:+:[70740],BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,AP003900.6->chr21:11169720-11184046:+	CORL88_LUNG	0.33	0.67	0.1149	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	RP11-108K3.1--GLDN	5	3	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	1	1	0.89	0.89	0.0718	0.0431	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CORL88_LUNG	0.89	0.89	0.1149	FALSE	1	20	0	46	0	FALSE	ACH-000508
CORL88_LUNG	RP11-123O10.4--GRIP1	4	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0574	0.1005	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CORL88_LUNG	0.92	1	0.1579	FALSE	93	270	15	244	0	FALSE	ACH-000508
CORL88_LUNG	MT-ATP6--MT-CO1	5	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0718	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL88_LUNG	1	1	0.0718	FALSE	183	104	9	328	0	FALSE	ACH-000508
CORL88_LUNG	RP11-475J5.8--MT-ATP6	5	0	RP11-475J5.8	1074	chr5:99387547:-	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0718	0	RP11-475J5.8->chr5:99386837-99387620:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CORL88_LUNG	1	1	0.0718	FALSE	0	0	0	4	0	FALSE	ACH-000508
CORL88_LUNG	C15orf57--CBX3	3	7	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	28	67	0.26	0.13	0.0431	0.1005	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CORL88_LUNG	0.13	0.26	0.1436	TRUE	267	562	48	632	0	FALSE	ACH-000508
CORL88_LUNG	MB21D2--FGF12	4	2	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	20	6	0.23	0.5	0.0574	0.0287	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	CORL88_LUNG	0.23	0.5	0.0861	FALSE	0	17	0	46	0	FALSE	ACH-000508
CORL88_LUNG	RP11-120D5.1--MID1	3	6	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	4	23	0.69	0.28	0.0431	0.0861	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL88_LUNG	0.28	0.69	0.1292	FALSE	0	9	0	55	0	FALSE	ACH-000508
CORL88_LUNG	CTD-2008L17.1--RP11-456O19.2	3	5	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0431	0.0718	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	CORL88_LUNG	0.89	1	0.1149	FALSE	33	240	4	98	0	FALSE	ACH-000508
CORL88_LUNG	FGF14-IT1--FGF14	4	1	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	16	1	0.24	0.0574	0.0144	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	CORL88_LUNG	0.24	1	0.0718	TRUE	71	201	23	28	0	FALSE	ACH-000508
CORL88_LUNG	MT-TC--MT-TY	4	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	CORL88_LUNG	1	1	0.0574	FALSE	51	280	19	36	0	FALSE	ACH-000508
CORL88_LUNG	CCSER2--RGR	1	11	CCSER2	1223	chr10:86088564:+	RGR	33325	chr10:86014082:+	ONLY_REF_SPLICE	YES	27	423	0.31	0.03	0.0144	0.1579	LOCAL_REARRANGEMENT:+:[68626],CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,RGR->chr10:86004809-86019716:+,retinal_G_protein_coupled_receptor	CORL88_LUNG	0.03	0.31	0.1723	TRUE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	KANSL1--ARL17B	1	11	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	71	63	0.14	0.16	0.0144	0.1579	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	CORL88_LUNG	0.14	0.16	0.1723	TRUE	20	16	0	28	0	FALSE	ACH-000508
CORL88_LUNG	SGTB--NLN	1	11	SGTB	4345	chr5:65008788:-	NLN	26965	chr5:65081602:+	ONLY_REF_SPLICE	YES	69	130	0.15	0.08	0.0144	0.1579	NEIGHBORS_OVERLAP:-:+:[839],SGTB->chr5:64961755-65018862:-,small_glutamine_rich_tetratricopeptide_repeat_containing_beta,NLN->chr5:65018023-65167553:+,neurolysin	CORL88_LUNG	0.08	0.15	0.1723	FALSE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	AP003900.6--AC011718.2	3	2	AP003900.6	1122	chr21:11169841:+	AC011718.2	11864	chr22:20653813:-	ONLY_REF_SPLICE	YES	3	6	0.62	0.45	0.0431	0.0287	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	CORL88_LUNG	0.45	0.62	0.0718	TRUE	0	3	0	38	3	FALSE	ACH-000508
CORL88_LUNG	ARHGAP24--NENF	1	10	ARHGAP24	6161	chr4:86643125:+	NENF	30843	chr1:212615907:+	ONLY_REF_SPLICE	YES	2	67	0.85	0.14	0.0144	0.1436	{Klijn_CCL:Lung=1},ARHGAP24->Rho_GTPase_activating_protein_24,chr4:86396267-86923823:+,NENF->chr1:212606229-212619714:+,neudesin_neurotrophic_factor	CORL88_LUNG	0.14	0.85	0.158	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	DNAJC3-AS1--EXOC2	3	2	DNAJC3-AS1	2074	chr13:96328106:-	EXOC2	19348	chr6:610178:-	ONLY_REF_SPLICE	YES	13	41	0.28	0.11	0.0431	0.0287	DNAJC3-AS1->DNAJC3_antisense_RNA_1_(head_to_head),chr13:96300987-96329179:-,EXOC2->chr6:485133-693117:-,exocyst_complex_component_2	CORL88_LUNG	0.11	0.28	0.0718	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	1308	21784	0	0	0.0431	0.0287	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL88_LUNG	0	0	0.0718	FALSE	183	104	9	328	0	FALSE	ACH-000508
CORL88_LUNG	RP11-108K3.1--GLDN	2	6	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.0287	0.0861	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CORL88_LUNG	0.89	1	0.1148	FALSE	0	19	0	46	0	FALSE	ACH-000508
CORL88_LUNG	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0431	0.0287	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CORL88_LUNG	1	1	0.0718	FALSE	515	4851	409	746	0	FALSE	ACH-000508
CORL88_LUNG	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CORL88_LUNG	1	1	0.0431	TRUE	0	0	0	434	0	FALSE	ACH-000508
CORL88_LUNG	RNF13--RP11-167H9.4	3	0	RNF13	12719	chr3:149639014:+	RP11-167H9.4	22223	chr3:149842725:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0431	0	NEIGHBORS[77075],RNF13->chr3:149530495-149679926:+,ring_finger_protein_13,RP11-167H9.4->chr3:149757001-149931513:+	CORL88_LUNG	1	1	0.0431	FALSE	4	2	0	3	0	FALSE	ACH-000508
CORL88_LUNG	RP4-565E6.1--HYDIN	2	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	10	1	0.38	0.0287	0.0574	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	CORL88_LUNG	0.38	1	0.0861	TRUE	84	87	4	41	0	FALSE	ACH-000508
CORL88_LUNG	RP11-120D5.1--MID1	1	7	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	NO	3	20	0.73	0.29	0.0144	0.1005	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL88_LUNG	0.29	0.73	0.1149	FALSE	0	23	1	67	0	FALSE	ACH-000508
CORL88_LUNG	LDLRAD3--PRR5L	2	2	LDLRAD3	5673	chr11:36120011:+	PRR5L	34366	chr11:36422547:+	ONLY_REF_SPLICE	YES	51	4	0.07	0.5	0.0287	0.0287	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	CORL88_LUNG	0.07	0.5	0.0574	FALSE	12	71	0	11	0	FALSE	ACH-000508
CORL88_LUNG	PDS5B--RP11-29G8.3	2	2	PDS5B	1167	chr13:33160730:+	RP11-29G8.3	58567	chr13:76335068:+	ONLY_REF_SPLICE	YES	6	68	0.4	0.06	0.0287	0.0287	PDS5B->Oncogene{Bushman},PDS5_cohesin_associated_factor_B,chr13:33160564-33352157:+,RP11-29G8.3->chr13:76123909-76381256:+	CORL88_LUNG	0.06	0.4	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	CTD-2008L17.1--RP11-456O19.2	1	5	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	10258	chr18:53744753:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0144	0.0718	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	CORL88_LUNG	1	1	0.0862	FALSE	0	4	0	1	0	FALSE	ACH-000508
CORL88_LUNG	FUBP1--IVNS1ABP	2	1	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	NO	166	341	0.02	0.01	0.0287	0.0144	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	CORL88_LUNG	0.01	0.02	0.0431	FALSE	1	4	0	16	0	FALSE	ACH-000508
CORL88_LUNG	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.23	1	0.0287	0.0144	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CORL88_LUNG	0.23	1	0.0431	FALSE	164	806	69	479	0	FALSE	ACH-000508
CORL88_LUNG	PRKAA1--EGFLAM	1	5	PRKAA1	5604	chr5:40771821:-	EGFLAM	30659	chr5:38409106:+	ONLY_REF_SPLICE	NO	225	0	0.03	1	0.0144	0.0718	PRKAA1->chr5:40759481-40798476:-,protein_kinase_AMP-activated_catalytic_subunit_alpha_1,EGFLAM->EGF_like,_fibronectin_type_III_and_laminin_G_domains,chr5:38258511-38465123:+	CORL88_LUNG	0.03	1	0.0862	TRUE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	PSMB2--KPNA6	2	1	PSMB2	4860	chr1:36074847:-	KPNA6	14261	chr1:32620189:+	ONLY_REF_SPLICE	YES	979	0	0	1	0.0287	0.0144	PSMB2->chr1:36067185-36107445:-,proteasome_subunit_beta_2,KPNA6->chr1:32573639-32642169:+,karyopherin_subunit_alpha_6	CORL88_LUNG	0	1	0.0431	FALSE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	RP11-108K3.1--GLDN	1	5	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0144	0.0718	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CORL88_LUNG	0.86	0.86	0.0862	FALSE	0	30	1	55	0	FALSE	ACH-000508
CORL88_LUNG	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	23013	chrX:10491227:-	ONLY_REF_SPLICE	YES	3	42	0.5	0.07	0.0287	0.0144	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL88_LUNG	0.07	0.5	0.0431	FALSE	0	3	0	6	0	FALSE	ACH-000508
CORL88_LUNG	WWOX--RP11-319G9.5	2	1	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	52	1	0.05	0.75	0.0287	0.0144	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	CORL88_LUNG	0.05	0.75	0.0431	FALSE	33	33	2	19	0	FALSE	ACH-000508
CORL88_LUNG	ACN9--DYNC1I1	2	0	ACN9	2308	chr7:96747209:+	DYNC1I1	19085	chr7:95499195:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	ACN9->chr7:96745902-96811075:+,DYNC1I1->chr7:95401866-95739634:+,dynein_cytoplasmic_1_intermediate_chain_1	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	C17orf75--LMBR1L	2	0	C17orf75	5683	chr17:30665227:-	LMBR1L	23438	chr12:49494429:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	C17orf75->chr17:30651584-30677042:-,chromosome_17_open_reading_frame_75,LMBR1L->chr12:49490919-49504683:-,limb_development_membrane_protein_1_like	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	C1orf63--RHEB	2	0	C1orf63	2174	chr1:25663531:-	RHEB	24150	chr7:151188100:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	C1orf63->Oncogene{Bushman},chr1:25568728-25664704:-,RHEB->Ras_homolog_enriched_in_brain,chr7:151163098-151217206:-	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	CWF19L2--BUD13	2	0	CWF19L2	5600	chr11:107312229:-	BUD13	26751	chr11:116640938:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	CWF19L2->CWF19-like_2,_cell_cycle_control_(S._pombe),chr11:107197071-107328572:-,BUD13->BUD13_homolog,chr11:116618886-116643704:-	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	EMG1--ATP5S	2	0	EMG1	2414	chr12:7080253:+	ATP5S	14490	chr14:50781309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	EMG1->EMG1_N1-specific_pseudouridine_methyltransferase,chr12:7072408-7105520:+,ATP5S->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_s_(factor_B),chr14:50779044-50802276:+	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	ERCC6--LPGAT1	2	0	ERCC6	5243	chr10:50736463:-	LPGAT1	33835	chr1:211966532:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	ERCC6->Oncogene{Bushman},chr10:50663414-50747584:-,excision_repair_cross-complementation_group_6,LPGAT1->chr1:211916799-212004114:-,lysophosphatidylglycerol_acyltransferase_1	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	FBXO3--SLC35B2	2	0	FBXO3	10396	chr11:33777317:-	SLC35B2	28264	chr6:44223381:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	FBXO3->F-box_protein_3,chr11:33762485-33796089:-,SLC35B2->chr6:44221833-44225291:-,solute_carrier_family_35_member_B2	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	HAUS1--SMAD2	2	0	HAUS1	2037	chr18:43685334:+	SMAD2	31170	chr18:45375058:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	HAUS1->HAUS_augmin_like_complex_subunit_1,chr18:43684298-43708299:+,SMAD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_2,chr18:45357922-45457515:-	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	JPH1--ZMYM6	1	4	JPH1	3180	chr8:75227096:-	ZMYM6	13806	chr1:35496314:-	ONLY_REF_SPLICE	YES	60	56	0.08	0.08	0.0144	0.0574	JPH1->chr8:75146935-75233563:-,junctophilin_1,ZMYM6->chr1:35447134-35497342:-,chr1:35449523-35497569:-,zinc_finger_MYM-type_containing_6	CORL88_LUNG	0.08	0.08	0.0718	TRUE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	PRR4--ATF7IP	2	0	PRR4	1192	chr12:11324021:-	ATF7IP	35070	chr12:14576843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	PRR4->chr12:10977559-11324212:-,proline_rich_4_(lacrimal),ATF7IP->Oncogene{Bushman},activating_transcription_factor_7_interacting_protein,chr12:14518610-14651697:+	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	QDPR--GOLGA8A	2	0	QDPR	4087	chr4:17506002:-	GOLGA8A	31057	chr15:34690930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	QDPR->chr4:17461884-17513857:-,quinoid_dihydropteridine_reductase,GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	QDPR--GOLGA8A	2	0	QDPR	4087	chr4:17506002:-	GOLGA8A	20465	chr15:34837154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	QDPR->chr4:17461884-17513857:-,quinoid_dihydropteridine_reductase,GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	SEH1L--USP34	2	0	SEH1L	18361	chr18:12984189:+	USP34	72001	chr2:61463524:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	SEH1L->SEH1_like_nucleoporin,chr18:12947132-12987535:+,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	SF1--BAZ2B	2	0	SF1	3289	chr11:64543970:-	BAZ2B	31105	chr2:160304920:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx&tcga_normals:1/3694=0.03%,SF1->chr11:64532078-64546258:-,splicing_factor_1,BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	SPAG16--VWC2L	2	0	SPAG16	24747	chr2:215013990:+	VWC2L	37163	chr2:215301353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	NEIGHBORS[564],SPAG16->chr2:214149113-215275225:+,sperm_associated_antigen_16,VWC2L->chr2:215275789-215443683:+,von_Willebrand_factor_C_domain_containing_protein_2-like	CORL88_LUNG	1	1	0.0287	FALSE	3	0	0	4	0	FALSE	ACH-000508
CORL88_LUNG	SPC25--STK39	2	0	SPC25	8048	chr2:169730095:-	STK39	20136	chr2:168997268:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	SPC25->SPC25,_NDC80_kinetochore_complex_component,chr2:169690642-169769881:-,STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39	CORL88_LUNG	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	BAGE2--AP003900.6	1	3	BAGE2	13288	chr21:11020813:-	AP003900.6	24158	chr21:11171979:+	ONLY_REF_SPLICE	YES	9	3	0.31	0.57	0.0144	0.0431	LOCAL_INVERSION:-:+:[70740],BAGE2->B_melanoma_antigen_family_member_2,chr21:10996026-11098980:-,AP003900.6->chr21:11169720-11184046:+	CORL88_LUNG	0.31	0.57	0.0575	TRUE	0	0	0	1	0	TRUE	ACH-000508
CORL88_LUNG	CCSER2--RGR	1	3	CCSER2	1223	chr10:86088564:+	RGR	35440	chr10:86017649:+	ONLY_REF_SPLICE	YES	27	534	0.13	0.01	0.0144	0.0431	LOCAL_REARRANGEMENT:+:[68626],CCSER2->chr10:86088342-86278273:+,coiled-coil_serine_rich_protein_2,RGR->chr10:86004809-86019716:+,retinal_G_protein_coupled_receptor	CORL88_LUNG	0.01	0.13	0.0575	FALSE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	AL109763.2--TMPRSS15	1	2	AL109763.2	3701	chr21:20110242:-	TMPRSS15	15326	chr21:19756095:-	ONLY_REF_SPLICE	YES	39	14	0.07	0.18	0.0144	0.0287	NEIGHBORS[75386],AL109763.2->chr21:19933583-20132321:-,TMPRSS15->chr21:19641433-19858197:-,transmembrane_protease,_serine_15	CORL88_LUNG	0.07	0.18	0.0431	FALSE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	LDLRAD3--PRR5L	1	2	LDLRAD3	5673	chr11:36120011:+	PRR5L	30278	chr11:36415396:+	ONLY_REF_SPLICE	YES	51	1	0.06	0.75	0.0144	0.0287	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	CORL88_LUNG	0.06	0.75	0.0431	FALSE	12	80	1	10	0	FALSE	ACH-000508
CORL88_LUNG	LDLRAD3--PRR5L	1	2	LDLRAD3	5673	chr11:36120011:+	PRR5L	20830	chr11:36350668:+	ONLY_REF_SPLICE	YES	51	1	0.06	0.75	0.0144	0.0287	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	CORL88_LUNG	0.06	0.75	0.0431	FALSE	2	24	3	12	0	FALSE	ACH-000508
CORL88_LUNG	LYPD6--AC144449.1	1	2	LYPD6	6579	chr2:150305661:+	AC144449.1	18144	chr2:150600232:+	ONLY_REF_SPLICE	YES	36	0	0.08	1	0.0144	0.0287	GTEx_FI:{Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9]},LYPD6->LY6/PLAUR_domain_containing_6,chr2:150186499-150330662:+,AC144449.1->chr2:150443710-150704747:+	CORL88_LUNG	0.08	1	0.0431	TRUE	2	21	0	4	0	FALSE	ACH-000508
CORL88_LUNG	MB21D2--FGF12	1	2	MB21D2	1532	chr3:192635419:-	FGF12	9706	chr3:192445112:-	ONLY_REF_SPLICE	YES	20	0	0.13	1	0.0144	0.0287	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	CORL88_LUNG	0.13	1	0.0431	FALSE	0	0	0	2	0	FALSE	ACH-000508
CORL88_LUNG	NCALD--GRHL2	1	2	NCALD	9898	chr8:102928037:-	GRHL2	33417	chr8:102555469:+	ONLY_REF_SPLICE	YES	143	53	0.02	0.05	0.0144	0.0287	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[16817],NCALD->chr8:102698771-103137135:-,neurocalcin_delta,GRHL2->chr8:102504660-102681954:+,grainyhead_like_transcription_factor_2	CORL88_LUNG	0.02	0.05	0.0431	TRUE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0144	0.0287	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CORL88_LUNG	1	1	0.0431	FALSE	407	2205	196	549	0	FALSE	ACH-000508
CORL88_LUNG	TRAPPC9--KCNK9	1	2	TRAPPC9	55504	chr8:140898123:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	YES	49	9	0.06	0.25	0.0144	0.0287	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	CORL88_LUNG	0.06	0.25	0.0431	FALSE	7	13	2	16	0	FALSE	ACH-000508
CORL88_LUNG	BMP2K--FRAS1	1	1	BMP2K	16502	chr4:79800045:+	FRAS1	36989	chr4:79173546:+	ONLY_REF_SPLICE	NO	40	77	0.05	0.03	0.0144	0.0144	BMP2K->BMP2_inducible_kinase,chr4:79697496-79837526:+,FRAS1->Fraser_extracellular_matrix_complex_subunit_1,chr4:78978724-79465423:+	CORL88_LUNG	0.03	0.05	0.0288	TRUE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	LYPD6--AC144449.1	1	1	LYPD6	5480	chr2:150294340:+	AC144449.1	18144	chr2:150600232:+	ONLY_REF_SPLICE	NO	43	0	0.04	1	0.0144	0.0144	GTEx_FI:{Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9]},LYPD6->LY6/PLAUR_domain_containing_6,chr2:150186499-150330662:+,AC144449.1->chr2:150443710-150704747:+	CORL88_LUNG	0.04	1	0.0288	TRUE	0	8	0	1	6	FALSE	ACH-000508
CORL88_LUNG	MAPKAP1--PBX3	1	1	MAPKAP1	15839	chr9:128305338:-	PBX3	40311	chr9:128677965:+	ONLY_REF_SPLICE	YES	252	122	0.01	0.02	0.0144	0.0144	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:-:+:[40111],MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1,PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3	CORL88_LUNG	0.01	0.02	0.0288	FALSE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	MLLT10--DNAJC1	1	1	MLLT10	14908	chr10:21940697:+	DNAJC1	47756	chr10:22055238:-	ONLY_REF_SPLICE	YES	72	115	0.03	0.02	0.0144	0.0144	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:+:-:[12907],MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,DNAJC1->DnaJ_heat_shock_protein_family_(Hsp40)_member_C1,chr10:22045466-22292698:-	CORL88_LUNG	0.02	0.03	0.0288	TRUE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	PIK3R3--MAST2	1	1	PIK3R3	3451	chr1:46597519:-	MAST2	23663	chr1:46290105:+	ONLY_REF_SPLICE	NO	72	13	0.03	0.13	0.0144	0.0144	LOCAL_INVERSION:-:+:[4016],PIK3R3->chr1:46505812-46642160:-,phosphoinositide-3-kinase_regulatory_subunit_3,MAST2->chr1:46252659-46501796:+,microtubule_associated_serine/threonine_kinase_2	CORL88_LUNG	0.03	0.13	0.0288	TRUE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	PRKAA1--EGFLAM	1	1	PRKAA1	3977	chr5:40775512:-	EGFLAM	30659	chr5:38409106:+	ONLY_REF_SPLICE	YES	118	0	0.02	1	0.0144	0.0144	PRKAA1->chr5:40759481-40798476:-,protein_kinase_AMP-activated_catalytic_subunit_alpha_1,EGFLAM->EGF_like,_fibronectin_type_III_and_laminin_G_domains,chr5:38258511-38465123:+	CORL88_LUNG	0.02	1	0.0288	TRUE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	PRR16--HSD17B4	1	1	PRR16	1368	chr5:119800340:+	HSD17B4	30272	chr5:118842513:+	ONLY_REF_SPLICE	YES	11	96	0.15	0.02	0.0144	0.0144	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Coronary=1,Cells_-_Transformed_fibroblasts=1},PRR16->chr5:119799973-120023027:+,proline_rich_16,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	CORL88_LUNG	0.02	0.15	0.0288	TRUE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	PRR16--HSD17B4	1	1	PRR16	1368	chr5:119800340:+	HSD17B4	33764	chr5:118860911:+	ONLY_REF_SPLICE	YES	11	138	0.15	0.01	0.0144	0.0144	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Coronary=1,Cells_-_Transformed_fibroblasts=1},PRR16->chr5:119799973-120023027:+,proline_rich_16,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	CORL88_LUNG	0.01	0.15	0.0288	FALSE	1	2	0	1	0	FALSE	ACH-000508
CORL88_LUNG	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0144	0.0144	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CORL88_LUNG	1	1	0.0288	TRUE	62	24	1	171	0	FALSE	ACH-000508
CORL88_LUNG	TMEM164--RGAG1	1	1	TMEM164	9463	chrX:109416681:+	RGAG1	20408	chrX:109688381:+	ONLY_REF_SPLICE	NO	40	0	0.05	1	0.0144	0.0144	GTEx_FI:{Brain=[count:3=pct:0.5],Muscle=[count:1=pct:0.4]},TMEM164->chrX:109245859-109425962:+,transmembrane_protein_164,RGAG1->chrX:109602044-109699562:+,retrotransposon_gag_domain_containing_1	CORL88_LUNG	0.05	1	0.0288	TRUE	3	4	0	2	0	FALSE	ACH-000508
CORL88_LUNG	TRIT1--RSBN1L	1	1	TRIT1	4505	chr1:40319642:-	RSBN1L	19596	chr7:77378741:+	ONLY_REF_SPLICE	YES	1073	59	0	0.03	0.0144	0.0144	TRIT1->chr1:40306723-40349183:-,tRNA_isopentenyltransferase_1,RSBN1L->chr7:77325760-77412339:+,round_spermatid_basic_protein_1_like	CORL88_LUNG	0	0.03	0.0288	FALSE	0	0	0	1	0	FALSE	ACH-000508
CORL88_LUNG	VWDE--PHF14	1	1	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	NO	5	97	0.29	0.02	0.0144	0.0144	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	CORL88_LUNG	0.02	0.29	0.0288	TRUE	0	6	0	17	2	TRUE	ACH-000508
TIG3TD_FIBROBLAST	FN1--COL1A1	168	3	FN1	36954	chr2:216243980:-	COL1A1	69586	chr17:48264124:-	INCL_NON_REF_SPLICE	YES	9089	10227	0.02	0.02	2.1219	0.0379	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	TIG3TD_FIBROBLAST	0.02	0.02	2.1598	TRUE	0	0	0	13	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	TIMM23B--LINC00843	83	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0483	0.3536	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TIG3TD_FIBROBLAST	1	1	1.4019	TRUE	508	994	45	981	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	TIMM23--RP11-464F9.1	47	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	415	4	0.11	0.92	0.5936	0.0253	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TIG3TD_FIBROBLAST	0.11	0.92	0.6189	TRUE	519	3926	326	965	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	RP11-680G10.1--GSE1	30	17	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.87	0.3789	0.2147	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TIG3TD_FIBROBLAST	0.87	1	0.5936	TRUE	458	1351	185	561	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	RP11-680G10.1--GSE1	22	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	29	1	0.51	0.2779	0.101	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TIG3TD_FIBROBLAST	0.51	1	0.3789	TRUE	465	1949	224	605	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-TA--MT-TC	23	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2905	0.0126	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TIG3TD_FIBROBLAST	1	1	0.3031	FALSE	462	80	0	856	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	ZNF654--HMGB2	23	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2905	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TIG3TD_FIBROBLAST	1	1	0.2905	TRUE	0	0	0	518	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	PLXDC1--TAF13	22	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2779	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	TIG3TD_FIBROBLAST	1	1	0.2779	TRUE	7	10	0	216	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	COL12A1--COL1A1	20	1	COL12A1	59327	chr6:75797359:-	COL1A1	69301	chr17:48275118:-	INCL_NON_REF_SPLICE	NO	1006	8179	0.02	0	0.2526	0.0126	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,HGNC_GENEFAM,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	TIG3TD_FIBROBLAST	0	0.02	0.2652	FALSE	0	0	0	4	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	OR51S1--TP53I11	19	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.24	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	TIG3TD_FIBROBLAST	1	1	0.24	TRUE	402	216	10	229	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-ND6--MT-TE	13	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1642	0.0505	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TIG3TD_FIBROBLAST	1	1	0.2147	FALSE	499	1288	110	792	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	COL1A1--FN1	5	25	COL1A1	15650	chr17:48264125:-	FN1	58080	chr2:216243979:-	INCL_NON_REF_SPLICE	YES	10264	9104	0	0	0.0632	0.3158	GTEx&tcga_normals:13/3694=0.35%,GTEx:0.11%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	TIG3TD_FIBROBLAST	0	0	0.379	TRUE	0	0	0	18	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-ATP6--MT-CO1	11	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1389	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TIG3TD_FIBROBLAST	1	1	0.1389	FALSE	183	104	9	328	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	COL1A1--NPM1	7	12	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	10718	7	0	0.73	0.0884	0.1516	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	TIG3TD_FIBROBLAST	0	0.73	0.24	TRUE	0	0	0	31	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-ND4--MT-ATP8	10	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1263	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TIG3TD_FIBROBLAST	1	1	0.1263	FALSE	230	193	14	283	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	CALM3--MT-ND4L	7	3	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2206	0	0	1	0.0884	0.0379	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TIG3TD_FIBROBLAST	0	1	0.1263	FALSE	1	1	0	107	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-ND4--MT-ATP8	7	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13919	62	0	0.14	0.0884	0.0379	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TIG3TD_FIBROBLAST	0	0.14	0.1263	FALSE	231	217	16	283	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-ND1--MT-RNR2	7	2	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	35	0	0.2	1	0.0884	0.0253	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TIG3TD_FIBROBLAST	0.2	1	0.1137	FALSE	114	26	4	85	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	RP11-444D3.1--SOX5	6	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0758	0.0379	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	TIG3TD_FIBROBLAST	1	1	0.1137	TRUE	477	1352	189	275	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-ND4--MT-ATP8	6	2	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	17502	0	0	1	0.0758	0.0253	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TIG3TD_FIBROBLAST	0	1	0.1011	FALSE	231	217	16	283	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	5	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.92	0.92	0.0632	0.0758	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TIG3TD_FIBROBLAST	0.92	0.92	0.139	FALSE	515	4851	409	746	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0758	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TIG3TD_FIBROBLAST	1	1	0.0758	FALSE	183	104	9	328	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-ND4--MT-ATP8	6	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0758	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TIG3TD_FIBROBLAST	1	1	0.0758	FALSE	230	193	14	283	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-ND6--MT-TE	4	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.0505	0.101	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TIG3TD_FIBROBLAST	0.86	1	0.1515	FALSE	499	1288	110	792	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	PRR16--CTD-2334D19.1	4	8	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	149	0	0.07	1	0.0505	0.101	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	TIG3TD_FIBROBLAST	0.07	1	0.1515	FALSE	56	216	12	147	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	4	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.92	0.92	0.0505	0.0884	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TIG3TD_FIBROBLAST	0.92	0.92	0.1389	FALSE	467	2173	244	435	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	CTB-113P19.1--FTL	5	2	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0632	0.0253	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	TIG3TD_FIBROBLAST	0.88	1	0.0885	TRUE	0	2	0	13	2	TRUE	ACH-001207
TIG3TD_FIBROBLAST	LINC00623--SEC22B	4	6	LINC00623	2231	chr1:144340526:-	SEC22B	25473	chr1:145103908:+	ONLY_REF_SPLICE	YES	55	1154	0.15	0.01	0.0505	0.0758	LINC00623->chr1:144275918-144341756:-,long_intergenic_non-protein_coding_RNA_623,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	TIG3TD_FIBROBLAST	0.01	0.15	0.1263	TRUE	0	0	0	1	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	CTD-2337A12.1--CAST	5	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	95	1	0.06	0.0632	0.0126	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	TIG3TD_FIBROBLAST	0.06	1	0.0758	TRUE	347	1186	183	220	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	CTGF--ACTB	5	1	CTGF	1136	chr6:132272378:-	ACTB	10623	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	148	0	0.04	1	0.0632	0.0126	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	TIG3TD_FIBROBLAST	0.04	1	0.0758	TRUE	0	0	0	9	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0632	0.0126	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TIG3TD_FIBROBLAST	0.86	1	0.0758	FALSE	292	1546	117	613	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	IGFBP4--NPM1	4	4	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	3793	7	0	0.53	0.0505	0.0505	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	TIG3TD_FIBROBLAST	0	0.53	0.101	TRUE	0	0	0	38	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-ND6--MT-TE	3	8	MT-ND6	1333	chrM:14341:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0379	0.101	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TIG3TD_FIBROBLAST	0.92	1	0.1389	FALSE	499	1288	110	792	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	VIM--TUBB4B	5	0	VIM	2175	chr10:17271432:+	TUBB4B	13784	chr9:140137244:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	VIM->chr10:17270258-17279592:+,vimentin,TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb	TIG3TD_FIBROBLAST	1	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	LINC00623--SEC22B	4	3	LINC00623	2231	chr1:144340526:-	SEC22B	26583	chr1:145109524:+	ONLY_REF_SPLICE	YES	55	1308	0.11	0.01	0.0505	0.0379	LINC00623->chr1:144275918-144341756:-,long_intergenic_non-protein_coding_RNA_623,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	TIG3TD_FIBROBLAST	0.01	0.11	0.0884	FALSE	0	0	0	1	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	CTGF--ACTB	4	2	CTGF	1204	chr6:132272310:-	ACTB	10614	chr7:5570232:-	INCL_NON_REF_SPLICE	YES	66	0	0.08	1	0.0505	0.0253	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	TIG3TD_FIBROBLAST	0.08	1	0.0758	TRUE	0	0	0	9	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	MT-TA--MT-TC	4	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0.0253	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TIG3TD_FIBROBLAST	1	1	0.0758	FALSE	462	80	0	856	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0379	0.0758	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TIG3TD_FIBROBLAST	0.9	1	0.1137	FALSE	407	2205	196	549	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	ARF1--MT-CO1	4	0	ARF1	6843	chr1:228285395:+	MT-CO1	11358	chrM:5901:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TIG3TD_FIBROBLAST	1	1	0.0505	FALSE	0	0	0	7	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-ATP6--MT-CO1	4	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TIG3TD_FIBROBLAST	1	1	0.0505	FALSE	183	104	9	328	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TIG3TD_FIBROBLAST	1	1	0.0505	FALSE	462	80	0	856	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	XXbac-BPG252P9.9--TUBBP2	4	0	XXbac-BPG252P9.9	1003	chr6:30691652:-	TUBBP2	4896	chr13:41959197:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	TIG3TD_FIBROBLAST	1	1	0.0505	TRUE	0	1	0	48	1	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-ATP6--MT-CO1	3	2	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2973	24191	0	0	0.0379	0.0253	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TIG3TD_FIBROBLAST	0	0	0.0632	FALSE	183	104	9	328	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0.0253	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TIG3TD_FIBROBLAST	1	1	0.0632	FALSE	462	80	0	856	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	TPM2--ACTG1	3	2	TPM2	4592	chr9:35685061:-	ACTG1	14213	chr17:79478652:-	ONLY_REF_SPLICE	YES	3477	15046	0	0	0.0379	0.0253	GTEx&tcga_normals:114/3694=3.09%,GTEx:2.09%,GTEx_FI:{Blood_Vessel=[count:158=pct:42.8],Esophagus=[count:132=pct:32.6],Colon=[count:59=pct:30.9],Heart=[count:15=pct:6.0],Prostate=[count:9=pct:14.8],Stomach=[count:8=pct:9.0],Adipose_Tissue=[count:6=pct:2.0],Uterus=[count:4=pct:9.3],Small_Intestine=[count:3=pct:5.5],Vagina=[count:3=pct:5.5],Bladder=[count:2=pct:22.2],Lung=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Breast=[count:1=pct:0.9],_not_provided_=[count:1=pct:100.0],Fallopian_Tube=[count:1=pct:16.7],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=484;pct=5.59%;dist=Artery_-_Tibial=130,Esophagus_-_Muscularis=91,Esophagus_-_Gastroesophageal_Junction=56,Colon_-_Sigmoid=48,Artery_-_Coronary=29,Artery_-_Aorta=28,Colon_-_Transverse=23,Stomach=15,Adipose_-_Subcutaneous=13,Prostate=10,Uterus=8,Esophagus_-_Mucosa=6,Small_Intestine_-_Terminal_Ileum=5,Heart_-_Left_Ventricle=5,Heart_-_Atrial_Appendage=5,Breast_-_Mammary_Tissue=2,Vagina=2,Bladder=2,Ovary=1,Lung=1,Adipose_-_Visceral_(Omentum)=1,Muscle_-_Skeletal=1,Cells_-_Transformed_fibroblasts=1,Fallopian_Tube=1},TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta),ACTG1->actin_gamma_1,chr17:79476997-79490873:-	TIG3TD_FIBROBLAST	0	0	0.0632	FALSE	237	57	25	9	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-ATP6--MT-CO1	3	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	10646	21001	0	0	0.0379	0.0126	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TIG3TD_FIBROBLAST	0	0	0.0505	FALSE	183	104	9	328	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-ND4--MT-ATP8	3	1	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	13199	997	0	0	0.0379	0.0126	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TIG3TD_FIBROBLAST	0	0	0.0505	FALSE	231	205	14	283	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	XXbac-BPG252P9.9--TUBBP2	3	1	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	NO	5242	0	0	1	0.0379	0.0126	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	TIG3TD_FIBROBLAST	0	1	0.0505	FALSE	0	1	0	48	1	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TIG3TD_FIBROBLAST	1	1	0.0379	FALSE	230	193	14	283	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TIG3TD_FIBROBLAST	1	1	0.0379	FALSE	230	198	14	283	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TIG3TD_FIBROBLAST	1	1	0.0379	TRUE	0	0	0	434	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	RP11-662B19.2--WDR37	3	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0379	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	TIG3TD_FIBROBLAST	1	1	0.0379	TRUE	31	42	1	25	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	RPS23--ACTB	3	0	RPS23	1766	chr5:81573631:-	ACTB	12635	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	GTEx&tcga_normals:1/3694=0.03%,RPS23->chr5:81569177-81574396:-,ribosomal_protein_S23,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	TIG3TD_FIBROBLAST	1	1	0.0379	TRUE	0	0	0	1	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	VIM--TPM2	3	0	VIM	2115	chr10:17271372:+	TPM2	13337	chr9:35689885:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	TIG3TD_FIBROBLAST	1	1	0.0379	TRUE	0	0	0	8	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	VIM--TPM2	3	0	VIM	2142	chr10:17271399:+	TPM2	13302	chr9:35689920:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	TIG3TD_FIBROBLAST	1	1	0.0379	TRUE	0	0	0	8	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	TIG3TD_FIBROBLAST	1	1	0.0379	TRUE	0	1	0	48	1	FALSE	ACH-001207
TIG3TD_FIBROBLAST	LSAMP--RP11-768G7.2	2	2	LSAMP	1067	chr3:117716029:-	RP11-768G7.2	27686	chr3:117408925:-	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0253	0.0253	NEIGHBORS_OVERLAP:-:-:[12239],LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein,RP11-768G7.2->chr3:117397540-117409779:-	TIG3TD_FIBROBLAST	0.19	1	0.0506	FALSE	0	2	0	3	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	LSAMP--RP11-768G7.2	2	2	LSAMP	1067	chr3:117716029:-	RP11-768G7.2	27689	chr3:117408922:-	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0253	0.0253	NEIGHBORS_OVERLAP:-:-:[12239],LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein,RP11-768G7.2->chr3:117397540-117409779:-	TIG3TD_FIBROBLAST	0.19	1	0.0506	FALSE	0	2	0	3	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	NCOR2--UBC	2	1	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	43	53	0.07	0.05	0.0253	0.0126	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	TIG3TD_FIBROBLAST	0.05	0.07	0.0379	TRUE	52	148	13	33	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	PPP1R12C--CNN2	2	1	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	177	1573	0.02	0	0.0253	0.0126	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	TIG3TD_FIBROBLAST	0	0.02	0.0379	FALSE	35	34	3	30	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	SDCCAG8--CEP170	2	1	SDCCAG8	1223	chr1:243419542:+	CEP170	34466	chr1:243388623:-	ONLY_REF_SPLICE	YES	73	185	0.04	0.02	0.0253	0.0126	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[670],SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	TIG3TD_FIBROBLAST	0.02	0.04	0.0379	TRUE	0	3	1	3	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	ATF6B--MYO19	2	0	ATF6B	4790	chr6:32088548:-	MYO19	27908	chr17:34867294:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	ATF6B->activating_transcription_factor_6_beta,chr6:32065953-32096030:-,MYO19->chr17:34851477-34899284:-,myosin_XIX	TIG3TD_FIBROBLAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	ATG4B--FAF2	2	0	ATG4B	12057	chr2:242608100:+	FAF2	32368	chr5:175933769:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+,FAF2->Fas_associated_factor_family_member_2,chr5:175874629-175937075:+	TIG3TD_FIBROBLAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	DNAJC25--UGCG	2	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	TIG3TD_FIBROBLAST	1	1	0.0253	TRUE	50	73	10	50	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	NAALADL2--FNDC3B	2	0	NAALADL2	12723	chr3:174455536:+	FNDC3B	46357	chr3:171830242:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	NAALADL2->N-acetylated_alpha-linked_acidic_dipeptidase-like_2,chr3:174156363-175523428:+,FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B	TIG3TD_FIBROBLAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	NCOR2--UBC	2	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	TIG3TD_FIBROBLAST	1	1	0.0253	TRUE	145	312	16	51	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	PDE4B--CACNA2D1	2	0	PDE4B	2847	chr1:66379039:+	CACNA2D1	35290	chr7:81978965:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	PDE4B->chr1:66258197-66840259:+,phosphodiesterase_4B,CACNA2D1->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_1,chr7:81575760-82073114:-	TIG3TD_FIBROBLAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	RNF19B--PRMT7	2	0	RNF19B	1635	chr1:33429652:-	PRMT7	20747	chr16:68358586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	RNF19B->chr1:33402046-33430286:-,ring_finger_protein_19B,PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7	TIG3TD_FIBROBLAST	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-001207
TIG3TD_FIBROBLAST	LINC00623--SEC22B	1	3	LINC00623	5379	chr1:144326026:-	SEC22B	26583	chr1:145109524:+	ONLY_REF_SPLICE	YES	54	1308	0.07	0	0.0126	0.0379	LINC00623->chr1:144275918-144341756:-,long_intergenic_non-protein_coding_RNA_623,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	TIG3TD_FIBROBLAST	0	0.07	0.0505	FALSE	0	0	0	1	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0126	0.0253	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	TIG3TD_FIBROBLAST	1	1	0.0379	TRUE	274	363	69	150	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	AMBRA1--SEC31A	1	1	AMBRA1	1298	chr11:46615378:-	SEC31A	62844	chr4:83752128:-	ONLY_REF_SPLICE	NO	44	921	0.04	0	0.0126	0.0126	HGNC_GENEFAM,AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-	TIG3TD_FIBROBLAST	0	0.04	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	FN1--ASPH	1	1	FN1	41587	chr2:216238045:-	ASPH	73915	chr8:62556560:-	ONLY_REF_SPLICE	YES	10657	1796	0	0	0.0126	0.0126	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-	TIG3TD_FIBROBLAST	0	0	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	FN1--COL6A3	1	1	FN1	33999	chr2:216246935:-	COL6A3	106707	chr2:238234367:-	ONLY_REF_SPLICE	NO	9976	3302	0	0	0.0126	0.0126	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	TIG3TD_FIBROBLAST	0	0	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	GPC5--GPC5-IT1	1	1	GPC5	10063	chr13:92797242:+	GPC5-IT1	16096	chr13:93161766:+	ONLY_REF_SPLICE	YES	7	0	0.22	1	0.0126	0.0126	NEIGHBORS_OVERLAP:+:+:[25488],GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5,GPC5-IT1->GPC5_intronic_transcript_1,chr13:93136859-93162347:+	TIG3TD_FIBROBLAST	0.22	1	0.0252	FALSE	21	23	3	6	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	MYLIP--DTNBP1	1	1	MYLIP	1285	chr6:16129640:+	DTNBP1	16727	chr6:15638035:-	ONLY_REF_SPLICE	YES	30	75	0.06	0.03	0.0126	0.0126	MYLIP->chr6:16129356-16148479:+,myosin_regulatory_light_chain_interacting_protein,DTNBP1->chr6:15523032-15663289:-,dystrobrevin_binding_protein_1	TIG3TD_FIBROBLAST	0.03	0.06	0.0252	TRUE	0	0	0	1	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.15	1	0.0126	0.0126	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TIG3TD_FIBROBLAST	0.15	1	0.0252	FALSE	125	705	46	456	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	SCFD2--FIP1L1	1	1	SCFD2	6695	chr4:54011500:-	FIP1L1	31107	chr4:54319087:+	ONLY_REF_SPLICE	YES	55	278	0.04	0.01	0.0126	0.0126	GTEx_FI:{Pancreas=[count:1=pct:0.6],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=6;pct=0.07%;dist=Ovary=1,Prostate=1,Liver=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:-:+:[11568],SCFD2->chr4:53739149-54232242:-,sec1_family_domain_containing_2,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	TIG3TD_FIBROBLAST	0.01	0.04	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-001207
TIG3TD_FIBROBLAST	ZFP36L1--ACTN1	1	1	ZFP36L1	4592	chr14:69259599:-	ACTN1	20378	chr14:69378959:-	ONLY_REF_SPLICE	NO	641	1467	0	0	0.0126	0.0126	LOCAL_REARRANGEMENT:-:[77670],ZFP36L1->Oncogene{Bushman},ZFP36_ring_finger_protein-like_1,chr14:69254377-69263190:-,ACTN1->actinin_alpha_1,chr14:69340860-69446157:-	TIG3TD_FIBROBLAST	0	0	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-001207
NCIH2171_LUNG	PVT1--CHD7	675	514	PVT1	10746	chr8:128951922:+	CHD7	34736	chr8:61707545:+	ONLY_REF_SPLICE	YES	15	50	0.99	0.96	10.6645	8.1208	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.96	0.99	18.7853	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	253	429	PVT1	1202	chr8:128806980:+	SLC7A7	36644	chr14:23282649:-	ONLY_REF_SPLICE	YES	577	43	0.54	0.94	3.9972	6.7779	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.54	0.94	10.7751	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	202	596	PVT1	1202	chr8:128806980:+	SLC7A7	34887	chr14:23284660:-	ONLY_REF_SPLICE	YES	577	0	0.58	1	3.1914	9.4164	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.58	1	12.6078	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	ENO2--ACRBP	231	208	ENO2	5418	chr12:7027326:+	ACRBP	13267	chr12:6756178:-	ONLY_REF_SPLICE	YES	2588	12	0.15	0.97	3.6496	3.2862	{Klijn_CCL:Lung=1},ENO2->chr12:7022909-7032861:+,enolase_2,ACRBP->acrosin_binding_protein,chr12:6747241-6756626:-	NCIH2171_LUNG	0.15	0.97	6.9358	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	143	234	PVT1	8346	chr8:128903244:+	CHD7	34736	chr8:61707545:+	ONLY_REF_SPLICE	YES	235	50	0.62	0.88	2.2593	3.697	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.62	0.88	5.9563	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	27	633	PVT1	2520	chr8:128808317:+	SLC7A7	34887	chr14:23284660:-	ONLY_REF_SPLICE	YES	561	0	0.54	1	0.4266	10.0009	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.54	1	10.4275	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	17	616	PVT1	2457	chr8:128808254:+	SLC7A7	34887	chr14:23284660:-	ONLY_REF_SPLICE	YES	552	0	0.53	1	0.2686	9.7323	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.53	1	10.0009	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CCNB1IP1	118	129	PVT1	1202	chr8:128806980:+	CCNB1IP1	31291	chr14:20797532:-	ONLY_REF_SPLICE	YES	577	8	0.3	0.97	1.8643	2.0381	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	NCIH2171_LUNG	0.3	0.97	3.9024	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	1	596	PVT1	1202	chr8:128806980:+	SLC7A7	32742	chr14:23288965:-	ONLY_REF_SPLICE	YES	577	0	0.51	1	0.0158	9.4164	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.51	1	9.4322	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	115	123	PVT1	1202	chr8:128806980:+	SLC7A7	38609	chr14:23249260:-	ONLY_REF_SPLICE	YES	577	475	0.29	0.33	1.8169	1.9433	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.29	0.33	3.7602	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	12	458	PVT1	2520	chr8:128808317:+	SLC7A7	36644	chr14:23282649:-	ONLY_REF_SPLICE	YES	561	43	0.46	0.92	0.1896	7.2361	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.46	0.92	7.4257	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	8	444	PVT1	2457	chr8:128808254:+	SLC7A7	36644	chr14:23282649:-	ONLY_REF_SPLICE	YES	552	43	0.45	0.91	0.1264	7.0149	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.45	0.91	7.1413	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	CACNA1C--SPSB2	88	56	CACNA1C	5158	chr12:2229596:+	SPSB2	69114	chr12:6986764:-	ONLY_REF_SPLICE	YES	8	10	0.95	0.94	1.3903	0.8848	CACNA1C->calcium_voltage-gated_channel_subunit_alpha1_C,chr12:2079952-2802108:+,SPSB2->chr12:6980099-6998522:-,splA/ryanodine_receptor_domain_and_SOCS_box_containing_2	NCIH2171_LUNG	0.94	0.95	2.2751	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	KANSL1--ARL17B	73	49	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	51	78	0.71	0.61	1.1533	0.7742	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH2171_LUNG	0.61	0.71	1.9275	TRUE	181	1564	124	196	0	FALSE	ACH-000525
NCIH2171_LUNG	PICALM--CCDC81	68	48	PICALM	23636	chr11:85685751:-	CCDC81	35323	chr11:86106376:+	ONLY_REF_SPLICE	YES	437	12	0.21	0.91	1.0743	0.7584	{Klijn_CCL:Lung=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81	NCIH2171_LUNG	0.21	0.91	1.8327	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CCNB1IP1	57	54	PVT1	1202	chr8:128806980:+	CCNB1IP1	32491	chr14:20794952:-	ONLY_REF_SPLICE	YES	577	399	0.16	0.22	0.9006	0.8532	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	NCIH2171_LUNG	0.16	0.22	1.7538	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	OR51S1--TP53I11	65	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.027	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH2171_LUNG	1	1	1.027	TRUE	402	216	10	229	0	FALSE	ACH-000525
NCIH2171_LUNG	TPX2--HM13	52	43	TPX2	2458	chr20:30330450:+	HM13	27706	chr20:30125982:+	ONLY_REF_SPLICE	YES	443	290	0.18	0.25	0.8216	0.6794	TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	NCIH2171_LUNG	0.18	0.25	1.501	TRUE	0	0	0	2	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	10	150	PVT1	10746	chr8:128951922:+	CHD7	35878	chr8:61712947:+	ONLY_REF_SPLICE	YES	15	209	0.91	0.43	0.158	2.3699	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.43	0.91	2.5279	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CCNB1IP1	10	142	PVT1	2457	chr8:128808254:+	CCNB1IP1	31291	chr14:20797532:-	ONLY_REF_SPLICE	YES	552	8	0.22	0.95	0.158	2.2435	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	NCIH2171_LUNG	0.22	0.95	2.4015	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	TIMM23B--LINC00843	41	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6478	0.2844	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2171_LUNG	1	1	0.9322	TRUE	508	994	45	981	0	FALSE	ACH-000525
NCIH2171_LUNG	PVT1--CCNB1IP1	8	148	PVT1	2520	chr8:128808317:+	CCNB1IP1	31291	chr14:20797532:-	ONLY_REF_SPLICE	YES	561	8	0.22	0.95	0.1264	2.3383	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	NCIH2171_LUNG	0.22	0.95	2.4647	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	12	127	PVT1	2520	chr8:128808317:+	SLC7A7	38609	chr14:23249260:-	ONLY_REF_SPLICE	YES	561	475	0.2	0.23	0.1896	2.0065	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.2	0.23	2.1961	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	RP11-680G10.1--GSE1	32	12	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	23	1	0.66	0.5056	0.1896	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2171_LUNG	0.66	1	0.6952	TRUE	458	1351	185	561	0	FALSE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	16	72	PVT1	8346	chr8:128903244:+	CHD7	35878	chr8:61712947:+	ONLY_REF_SPLICE	YES	235	209	0.27	0.3	0.2528	1.1375	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.27	0.3	1.3903	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	1	125	PVT1	2457	chr8:128808254:+	SLC7A7	38609	chr14:23249260:-	ONLY_REF_SPLICE	YES	552	475	0.19	0.21	0.0158	1.9749	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.19	0.21	1.9907	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	TIMM23--RP11-464F9.1	27	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	234	0	0.11	1	0.4266	0.0316	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2171_LUNG	0.11	1	0.4582	TRUE	519	3926	326	965	0	FALSE	ACH-000525
NCIH2171_LUNG	HM13--BCL2L1	22	17	HM13	1307	chr20:30102537:+	BCL2L1	25488	chr20:30253889:-	ONLY_REF_SPLICE	YES	346	315	0.1	0.11	0.3476	0.2686	{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[94885],HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13,BCL2L1->ArcherDX_panel,BCL2_like_1,FoundationOne_panel,Oncogene{Bushman},chr20:30252255-30311792:-	NCIH2171_LUNG	0.1	0.11	0.6162	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	PICALM--CCDC81	12	52	PICALM	23636	chr11:85685751:-	CCDC81	33843	chr11:86103583:+	ONLY_REF_SPLICE	YES	437	5	0.13	0.93	0.1896	0.8216	{Klijn_CCL:Lung=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81	NCIH2171_LUNG	0.13	0.93	1.0112	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	ZNF654--HMGB2	25	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.395	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2171_LUNG	1	1	0.395	TRUE	0	0	0	518	0	FALSE	ACH-000525
NCIH2171_LUNG	PVT1--CCNB1IP1	6	64	PVT1	2520	chr8:128808317:+	CCNB1IP1	32491	chr14:20794952:-	ONLY_REF_SPLICE	YES	561	399	0.11	0.15	0.0948	1.0112	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	NCIH2171_LUNG	0.11	0.15	1.106	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CCNB1IP1	6	61	PVT1	2457	chr8:128808254:+	CCNB1IP1	32491	chr14:20794952:-	ONLY_REF_SPLICE	YES	552	399	0.11	0.14	0.0948	0.9638	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	NCIH2171_LUNG	0.11	0.14	1.0586	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	7	57	PVT1	1202	chr8:128806980:+	SLC7A7	39723	chr14:23248146:-	ONLY_REF_SPLICE	YES	577	375	0.1	0.15	0.1106	0.9006	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.1	0.15	1.0112	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	RP11-680G10.1--GSE1	19	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	121	1	0.18	0.3002	0.1106	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2171_LUNG	0.18	1	0.4108	TRUE	465	1949	224	605	0	FALSE	ACH-000525
NCIH2171_LUNG	ENO2--ACRBP	7	49	ENO2	5418	chr12:7027326:+	ACRBP	13702	chr12:6755743:-	ONLY_REF_SPLICE	YES	2588	138	0.02	0.29	0.1106	0.7742	{Klijn_CCL:Lung=1},ENO2->chr12:7022909-7032861:+,enolase_2,ACRBP->acrosin_binding_protein,chr12:6747241-6756626:-	NCIH2171_LUNG	0.02	0.29	0.8848	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	ENO2--ACRBP	11	27	ENO2	5418	chr12:7027326:+	ACRBP	14797	chr12:6754503:-	ONLY_REF_SPLICE	YES	2588	171	0.01	0.18	0.1738	0.4266	{Klijn_CCL:Lung=1},ENO2->chr12:7022909-7032861:+,enolase_2,ACRBP->acrosin_binding_protein,chr12:6747241-6756626:-	NCIH2171_LUNG	0.01	0.18	0.6004	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	AC022182.1--CLVS1	15	5	AC022182.1	8857	chr8:61879028:+	CLVS1	13019	chr8:62044329:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.237	0.079	NEIGHBORS[90601],AC022182.1->chr8:61822612-61879116:+,CLVS1->chr8:61969717-62414204:+,clavesin_1	NCIH2171_LUNG	1	1	0.316	FALSE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	MT-TA--MT-TC	15	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.237	0.079	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2171_LUNG	1	1	0.316	FALSE	462	80	0	856	0	FALSE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	1	59	PVT1	2520	chr8:128808317:+	SLC7A7	39723	chr14:23248146:-	ONLY_REF_SPLICE	YES	561	375	0.1	0.14	0.0158	0.9322	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.1	0.14	0.948	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	NPM1P24--SET	15	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.237	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2171_LUNG	1	1	0.237	TRUE	0	0	0	434	0	FALSE	ACH-000525
NCIH2171_LUNG	THSD7B--CCAT1	13	8	THSD7B	35663	chr2:138425431:+	CCAT1	42137	chr8:128221962:-	ONLY_REF_SPLICE	YES	22	0	0.49	1	0.2054	0.1264	THSD7B->chr2:137523115-138435287:+,thrombospondin_type_1_domain_containing_7B,CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding)	NCIH2171_LUNG	0.49	1	0.3318	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	7	28	PVT1	10746	chr8:128951922:+	CHD7	39139	chr8:61728946:+	ONLY_REF_SPLICE	YES	15	472	0.7	0.07	0.1106	0.4424	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.07	0.7	0.553	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	5	33	PVT1	1202	chr8:128806980:+	CHD7	34736	chr8:61707545:+	ONLY_REF_SPLICE	YES	577	50	0.06	0.43	0.079	0.5214	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.06	0.43	0.6004	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	MT-ND6--MT-TE	13	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2054	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2171_LUNG	1	1	0.2054	FALSE	499	1288	110	792	0	FALSE	ACH-000525
NCIH2171_LUNG	TPX2--HM13	8	17	TPX2	2458	chr20:30330450:+	HM13	30321	chr20:30132750:+	ONLY_REF_SPLICE	YES	443	273	0.05	0.08	0.1264	0.2686	TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	NCIH2171_LUNG	0.05	0.08	0.395	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	RP11-382A18.2--YTHDF3	11	4	RP11-382A18.2	1162	chr8:128351680:+	YTHDF3	14524	chr8:64122241:+	ONLY_REF_SPLICE	YES	0	330	1	0.04	0.1738	0.0632	RP11-382A18.2->chr8:128351519-128404876:+,YTHDF3->YTH_N6-methyladenosine_RNA_binding_protein_3,chr8:64081112-64125346:+	NCIH2171_LUNG	0.04	1	0.237	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	10	7	PVT1	1202	chr8:128806980:+	SLC7A7	43470	chr14:23242925:-	ONLY_REF_SPLICE	YES	577	481	0.03	0.03	0.158	0.1106	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.03	0.03	0.2686	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	AC022182.1--C3AR1	10	6	AC022182.1	8857	chr8:61879028:+	C3AR1	13197	chr12:8212791:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.158	0.0948	AC022182.1->chr8:61822612-61879116:+,C3AR1->Oncogene{Bushman},chr12:8210898-8219067:-,complement_component_3a_receptor_1	NCIH2171_LUNG	1	1	0.2528	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	RP11-123O10.4--GRIP1	11	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	2	1	0.87	0.1738	0.0316	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2171_LUNG	0.87	1	0.2054	FALSE	416	2512	207	587	0	FALSE	ACH-000525
NCIH2171_LUNG	FBRSL1--SNAP29	11	0	FBRSL1	24302	chr12:133161403:+	SNAP29	33876	chr22:21242621:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1738	0	FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,SNAP29->chr22:21213271-21245506:+,synaptosome_associated_protein_29kDa	NCIH2171_LUNG	1	1	0.1738	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	1	40	PVT1	10746	chr8:128951922:+	CHD7	38083	chr8:61720776:+	ONLY_REF_SPLICE	YES	15	469	0.73	0.08	0.0158	0.632	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.08	0.73	0.6478	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	RPAIN--TUBB	11	0	RPAIN	2822	chr17:5324786:+	TUBB	17601	chr6:30690314:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1738	0	RPAIN->RPA_interacting_protein,chr17:5322961-5336196:+,TUBB->chr6:30687978-30693203:+,tubulin_beta_class_I	NCIH2171_LUNG	1	1	0.1738	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	CKB--MT-CO1	9	6	CKB	4320	chr14:103986129:-	MT-CO1	7451	chrM:5901:+	INCL_NON_REF_SPLICE	YES	428	0	0.03	1	0.1422	0.0948	CKB->chr14:103985996-103989448:-,creatine_kinase_B,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2171_LUNG	0.03	1	0.237	FALSE	0	0	0	3	0	FALSE	ACH-000525
NCIH2171_LUNG	HSP90AB1--MT-RNR2	9	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2934	0	0	1	0.1422	0.0474	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2171_LUNG	0	1	0.1896	FALSE	13	9	0	364	0	FALSE	ACH-000525
NCIH2171_LUNG	MT-ND6--MT-TE	8	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1264	0.079	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2171_LUNG	0.93	1	0.2054	FALSE	499	1288	110	792	0	FALSE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	1	33	PVT1	2520	chr8:128808317:+	CHD7	34736	chr8:61707545:+	ONLY_REF_SPLICE	NO	560	50	0.06	0.4	0.0158	0.5214	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.06	0.4	0.5372	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	EED--RP11-382A18.2	7	8	EED	8639	chr11:85975305:+	RP11-382A18.2	20024	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	366	0	0.04	1	0.1106	0.1264	EED->chr11:85955586-85989855:+,embryonic_ectoderm_development,RP11-382A18.2->chr8:128351519-128404876:+	NCIH2171_LUNG	0.04	1	0.237	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	3	21	PVT1	8346	chr8:128903244:+	CHD7	38083	chr8:61720776:+	ONLY_REF_SPLICE	YES	235	469	0.09	0.05	0.0474	0.3318	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.05	0.09	0.3792	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	SENP2--MAP3K13	7	3	SENP2	9004	chr3:185327138:+	MAP3K13	54697	chr3:185205396:+	INCL_NON_REF_SPLICE	YES	110	14	0.08	0.42	0.1106	0.0474	LOCAL_REARRANGEMENT:+:[93399],SENP2->SUMO1/sentrin/SMT3_specific_peptidase_2,chr3:185300284-185351339:+,MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13	NCIH2171_LUNG	0.08	0.42	0.158	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PICALM--CCDC81	2	21	PICALM	19502	chr11:85692172:-	CCDC81	35323	chr11:86106376:+	ONLY_REF_SPLICE	YES	502	12	0.04	0.66	0.0316	0.3318	{Klijn_CCL:Lung=1},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81	NCIH2171_LUNG	0.04	0.66	0.3634	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	KANSL1--ARL17B	1	22	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	NO	51	68	0.31	0.25	0.0158	0.3476	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH2171_LUNG	0.25	0.31	0.3634	TRUE	20	16	0	28	0	FALSE	ACH-000525
NCIH2171_LUNG	MT-ND6--MT-TE	5	5	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.079	0.079	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2171_LUNG	1	1	0.158	FALSE	499	1288	110	792	0	FALSE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	2	16	PVT1	8346	chr8:128903244:+	CHD7	39139	chr8:61728946:+	ONLY_REF_SPLICE	YES	235	472	0.07	0.04	0.0316	0.2528	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.04	0.07	0.2844	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	3	12	PVT1	1202	chr8:128806980:+	SLC7A7	41646	chr14:23244749:-	ONLY_REF_SPLICE	YES	577	503	0.03	0.03	0.0474	0.1896	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.03	0.03	0.237	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	4	8	PVT1	1202	chr8:128806980:+	SLC7A7	43070	chr14:23243325:-	ONLY_REF_SPLICE	YES	577	515	0.02	0.02	0.0632	0.1264	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.02	0.02	0.1896	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	TPX2--HM13	2	16	TPX2	1351	chr20:30327424:+	HM13	27706	chr20:30125982:+	ONLY_REF_SPLICE	YES	498	290	0.03	0.06	0.0316	0.2528	TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,HM13->chr20:30102231-30157370:+,histocompatibility_(minor)_13	NCIH2171_LUNG	0.03	0.06	0.2844	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	C15orf57--CBX3	5	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	29	17	0.22	0.32	0.079	0.0474	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2171_LUNG	0.22	0.32	0.1264	TRUE	267	562	48	632	0	FALSE	ACH-000525
NCIH2171_LUNG	HNRNPD--SCD5	5	2	HNRNPD	3442	chr4:83292681:-	SCD5	22924	chr4:83557976:-	ONLY_REF_SPLICE	YES	285	30	0.02	0.19	0.079	0.0316	HNRNPD->Oncogene{Bushman},chr4:83273651-83295656:-,heterogeneous_nuclear_ribonucleoprotein_D,SCD5->chr4:83550692-83720010:-,stearoyl-CoA_desaturase_5	NCIH2171_LUNG	0.02	0.19	0.1106	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	MT-ND6--MT-TE	4	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0.0948	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2171_LUNG	1	1	0.158	FALSE	499	1288	110	792	0	FALSE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	2	13	PVT1	1202	chr8:128806980:+	CHD7	35878	chr8:61712947:+	ONLY_REF_SPLICE	YES	577	209	0.03	0.07	0.0316	0.2054	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.03	0.07	0.237	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	USP48--WNT4	5	0	USP48	1783	chr1:22109317:-	WNT4	40253	chr1:22456344:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.079	0	USP48->chr1:22004791-22110099:-,ubiquitin_specific_peptidase_48,WNT4->Wnt_family_member_4,chr1:22443798-22470462:-	NCIH2171_LUNG	1	1	0.079	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	ABHD16A--FKBPL	4	3	ABHD16A	10981	chr6:31655818:-	FKBPL	15511	chr6:32097631:-	ONLY_REF_SPLICE	YES	45	32	0.13	0.18	0.0632	0.0474	{Klijn_CCL:Lung=1},ABHD16A->abhydrolase_domain_containing_16A,chr6:31654726-31671221:-,FKBPL->FK506_binding_protein_like,chr6:32096484-32098068:-	NCIH2171_LUNG	0.13	0.18	0.1106	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	HSP90AB1--MT-RNR2	4	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2939	0	0	1	0.0632	0.0474	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2171_LUNG	0	1	0.1106	FALSE	13	9	0	364	0	FALSE	ACH-000525
NCIH2171_LUNG	MT-ND6--MT-TE	3	7	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0474	0.1106	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2171_LUNG	0.91	1	0.158	FALSE	499	1288	110	792	0	FALSE	ACH-000525
NCIH2171_LUNG	PVT1--CCNB1IP1	2	11	PVT1	1202	chr8:128806980:+	CCNB1IP1	38297	chr14:20784719:-	ONLY_REF_SPLICE	NO	577	515	0.02	0.02	0.0316	0.1738	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	NCIH2171_LUNG	0.02	0.02	0.2054	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	3	6	PVT1	1202	chr8:128806980:+	CHD7	39139	chr8:61728946:+	ONLY_REF_SPLICE	YES	577	472	0.02	0.02	0.0474	0.0948	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0.02	0.02	0.1422	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	HNRNPD--SCD5	4	1	HNRNPD	2058	chr4:83294599:-	SCD5	22924	chr4:83557976:-	ONLY_REF_SPLICE	YES	109	30	0.04	0.14	0.0632	0.0158	HNRNPD->Oncogene{Bushman},chr4:83273651-83295656:-,heterogeneous_nuclear_ribonucleoprotein_D,SCD5->chr4:83550692-83720010:-,stearoyl-CoA_desaturase_5	NCIH2171_LUNG	0.04	0.14	0.079	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	MT-ND5--MT-ND4L	3	5	MT-ND5	2656	chrM:13992:+	MT-ND4L	5828	chrM:10485:+	INCL_NON_REF_SPLICE	YES	1389	0	0.01	1	0.0474	0.079	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1571],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2171_LUNG	0.01	1	0.1264	FALSE	1	4	0	2	0	FALSE	ACH-000525
NCIH2171_LUNG	C7orf50--CASC8	3	4	C7orf50	3078	chr7:1166893:-	CASC8	25076	chr8:128302305:-	ONLY_REF_SPLICE	YES	222	1	0.03	0.88	0.0474	0.0632	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH2171_LUNG	0.03	0.88	0.1106	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	CTD-2034I4.1--CTD-2034I4.2	4	0	CTD-2034I4.1	1098	chr15:81719886:+	CTD-2034I4.2	12876	chr15:81980751:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0632	0	CTD-2034I4.1->chr15:81719789-82047558:+,CTD-2034I4.2->chr15:81846344-81989121:+	NCIH2171_LUNG	1	1	0.0632	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PFKM--MT-ND4L	4	0	PFKM	16513	chr12:48531603:+	MT-ND4L	27661	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	PFKM->chr12:48498922-48540187:+,phosphofructokinase,_muscle,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2171_LUNG	1	1	0.0632	FALSE	0	0	0	8	0	FALSE	ACH-000525
NCIH2171_LUNG	CCDC91--PPFIBP1	3	3	CCDC91	18961	chr12:28460682:+	PPFIBP1	60620	chr12:27829361:+	ONLY_REF_SPLICE	YES	254	92	0.02	0.06	0.0474	0.0474	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+	NCIH2171_LUNG	0.02	0.06	0.0948	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	PVT1--SLC7A7	1	11	PVT1	1202	chr8:128806980:+	SLC7A7	42683	chr14:23243712:-	ONLY_REF_SPLICE	YES	577	480	0.02	0.02	0.0158	0.1738	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SLC7A7->chr14:23242431-23299029:-,solute_carrier_family_7_member_7	NCIH2171_LUNG	0.02	0.02	0.1896	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0.0316	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2171_LUNG	1	1	0.079	FALSE	462	80	0	856	0	FALSE	ACH-000525
NCIH2171_LUNG	CACNA1C--SPSB2	2	5	CACNA1C	5158	chr12:2229596:+	SPSB2	72145	chr12:6982161:-	ONLY_REF_SPLICE	YES	8	27	0.47	0.21	0.0316	0.079	CACNA1C->calcium_voltage-gated_channel_subunit_alpha1_C,chr12:2079952-2802108:+,SPSB2->chr12:6980099-6998522:-,splA/ryanodine_receptor_domain_and_SOCS_box_containing_2	NCIH2171_LUNG	0.21	0.47	0.1106	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	AC022182.1--CLVS1	3	0	AC022182.1	3937	chr8:61832981:+	CLVS1	13019	chr8:62044329:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0474	0	NEIGHBORS[90601],AC022182.1->chr8:61822612-61879116:+,CLVS1->chr8:61969717-62414204:+,clavesin_1	NCIH2171_LUNG	1	1	0.0474	FALSE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	CALM3--MT-ATP8	3	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2171_LUNG	1	1	0.0474	FALSE	12	0	0	26	0	FALSE	ACH-000525
NCIH2171_LUNG	CALM3--MT-ATP8	3	0	CALM3	8081	chr19:47113583:+	MT-ATP8	11589	chrM:8406:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2171_LUNG	1	1	0.0474	FALSE	12	0	0	26	0	FALSE	ACH-000525
NCIH2171_LUNG	CHD8--HNRNPC	3	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0474	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	NCIH2171_LUNG	1	1	0.0474	TRUE	2	8	0	24	0	FALSE	ACH-000525
NCIH2171_LUNG	DOCK3--RNF123	3	0	DOCK3	2144	chr3:50816189:+	RNF123	77430	chr3:49758233:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0474	0	DOCK3->chr3:50712672-51421629:+,dedicator_of_cytokinesis_3,RNF123->chr3:49726932-49758962:+,ring_finger_protein_123	NCIH2171_LUNG	1	1	0.0474	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	MT-ND2--MT-RNR2	3	0	MT-ND2	1459	chrM:4928:+	MT-RNR2	5624	chrM:2252:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	LOCAL_REARRANGEMENT:+:[1241],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH2171_LUNG	1	1	0.0474	FALSE	19	92	8	6	0	FALSE	ACH-000525
NCIH2171_LUNG	MT-ND5--MT-ND4L	3	0	MT-ND5	2166	chrM:13502:+	MT-ND4L	6095	chrM:10752:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[1571],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2171_LUNG	1	1	0.0474	FALSE	1	4	0	3	0	FALSE	ACH-000525
NCIH2171_LUNG	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2171_LUNG	1	1	0.0474	FALSE	462	80	0	856	0	FALSE	ACH-000525
NCIH2171_LUNG	PABPC1--NACAP1	2	2	PABPC1	10143	chr8:101718879:-	NACAP1	22736	chr8:102384759:+	ONLY_REF_SPLICE	YES	492	0	0.01	1	0.0316	0.0316	PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,NACAP1->chr8:102374022-102384935:+,nascent_polypeptide_associated_complex_alpha_subunit_pseudogene_1	NCIH2171_LUNG	0.01	1	0.0632	FALSE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	ATL2--HNRNPLL	2	1	ATL2	1143	chr2:38604285:-	HNRNPLL	26994	chr2:38813023:-	ONLY_REF_SPLICE	YES	74	108	0.04	0.03	0.0316	0.0158	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	NCIH2171_LUNG	0.03	0.04	0.0474	TRUE	0	1	0	4	0	FALSE	ACH-000525
NCIH2171_LUNG	PAIP2--MATR3	2	1	PAIP2	1394	chr5:138677669:+	MATR3	21102	chr5:138642928:+	ONLY_REF_SPLICE	YES	70	63	0.04	0.05	0.0316	0.0158	LOCAL_REARRANGEMENT:+:[9916],PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2,MATR3->chr5:138609441-138667360:+,matrin_3	NCIH2171_LUNG	0.04	0.05	0.0474	TRUE	0	1	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	TXNRD1--RP11-818F20.4	2	1	TXNRD1	22926	chr12:104720201:+	RP11-818F20.4	36886	chr12:104571295:+	ONLY_REF_SPLICE	YES	715	0	0	1	0.0316	0.0158	LOCAL_REARRANGEMENT:+:[38120],TXNRD1->chr12:104609557-104744061:+,thioredoxin_reductase_1,RP11-818F20.4->chr12:104564173-104571437:+	NCIH2171_LUNG	0	1	0.0474	FALSE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	AIMP1--RP11-66N24.4	2	0	AIMP1	4299	chr4:107248721:+	RP11-66N24.4	14518	chr14:23982426:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	AIMP1->aminoacyl_tRNA_synthetase_complex-interacting_multifunctional_protein_1,chr4:107236701-107270383:+,RP11-66N24.4->chr14:23980969-24029987:+	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	ASPH--CHD7	2	0	ASPH	8053	chr8:62593527:-	CHD7	59546	chr8:61728946:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	C14orf64--VAPB	2	0	C14orf64	1148	chr14:98444314:-	VAPB	16417	chr20:56993267:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	C14orf64->chr14:98391947-98444461:-,VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	CBX5--GNAS	2	0	CBX5	1095	chr12:54673792:-	GNAS	37563	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},CBX5->chr12:54624724-54673886:-,chromobox_5,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH2171_LUNG	1	1	0.0316	TRUE	0	1	0	3	1	TRUE	ACH-000525
NCIH2171_LUNG	CTD-2006C1.2--WDR62	2	0	CTD-2006C1.2	3469	chr19:12112637:+	WDR62	47003	chr19:36593654:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	CTD-2006C1.2->chr19:12098432-12157090:+,WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	CTD-2034I4.1--CTD-2034I4.2	2	0	CTD-2034I4.1	1098	chr15:81719886:+	CTD-2034I4.2	11761	chr15:81960509:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	CTD-2034I4.1->chr15:81719789-82047558:+,CTD-2034I4.2->chr15:81846344-81989121:+	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	FAM120B--PSMB1	2	0	FAM120B	3590	chr6:170615930:+	PSMB1	23731	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	NCIH2171_LUNG	1	1	0.0316	TRUE	0	2	0	5	0	TRUE	ACH-000525
NCIH2171_LUNG	KIAA1211--NOP58	2	0	KIAA1211	2203	chr4:57045596:+	NOP58	33281	chr2:203160397:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	KIAA1211->KIAA1211,chr4:57036361-57194791:+,NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	LUZP1--TCEA3	2	0	LUZP1	2577	chr1:23495259:-	TCEA3	21960	chr1:23744502:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	LUZP1->chr1:23410516-23504301:-,leucine_zipper_protein_1,TCEA3->chr1:23707554-23751233:-,transcription_elongation_factor_A3	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PLCB1--KCNJ3	2	0	PLCB1	3721	chr20:8352097:+	KCNJ3	55409	chr2:155711239:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1,KCNJ3->chr2:155554811-155714863:+,potassium_voltage-gated_channel_subfamily_J_member_3	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	PRRC2B--PPAPDC3	2	0	PRRC2B	5695	chr9:134314448:+	PPAPDC3	44222	chr9:134183310:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[84831],PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,PPAPDC3->chr9:134165081-134184649:+	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2171_LUNG	1	1	0.0316	FALSE	93	270	15	244	0	FALSE	ACH-000525
NCIH2171_LUNG	STX5--FANCA	2	0	STX5	6582	chr11:62591638:-	FANCA	30301	chr16:89842223:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	STX5->chr11:62574369-62599560:-,syntaxin_5,FANCA->ArcherDX_panel,Fanconi_anemia_complementation_group_A,FoundationOne_panel,Oncogene{Bushman},chr16:89803957-89883065:-	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	TASP1--CCDC91	2	0	TASP1	9330	chr20:13567897:-	CCDC91	41226	chr12:28458582:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	TASP1->chr20:13246709-13619587:-,taspase_1,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	XRCC6--ST13	2	0	XRCC6	3081	chr22:42024234:+	ST13	23244	chr22:41236696:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	NCIH2171_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	MDM2--SLC35E3	1	3	MDM2	9036	chr12:69218431:+	SLC35E3	26331	chr12:69152937:+	ONLY_REF_SPLICE	YES	99	39	0.04	0.09	0.0158	0.0474	LOCAL_REARRANGEMENT:+:[14448],MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,SLC35E3->chr12:69139886-69187508:+,solute_carrier_family_35_member_E3	NCIH2171_LUNG	0.04	0.09	0.0632	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	ATL2--HNRNPLL	1	2	ATL2	6688	chr2:38570410:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	NO	63	112	0.05	0.03	0.0158	0.0316	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	NCIH2171_LUNG	0.03	0.05	0.0474	TRUE	0	5	0	8	2	TRUE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	1	2	PVT1	1202	chr8:128806980:+	CHD7	54409	chr8:61761074:+	ONLY_REF_SPLICE	NO	577	843	0.01	0	0.0158	0.0316	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0	0.01	0.0474	FALSE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	1	2	PVT1	2457	chr8:128808254:+	CHD7	45871	chr8:61741222:+	ONLY_REF_SPLICE	YES	552	632	0.01	0	0.0158	0.0316	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0	0.01	0.0474	FALSE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	PVT1--CHD7	1	2	PVT1	8346	chr8:128903244:+	CHD7	48271	chr8:61748632:+	ONLY_REF_SPLICE	YES	235	736	0.01	0	0.0158	0.0316	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7	NCIH2171_LUNG	0	0.01	0.0474	FALSE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	AC007682.1--NRXN1	1	1	AC007682.1	2514	chr2:51279592:+	NRXN1	24293	chr2:51153093:-	ONLY_REF_SPLICE	YES	3	23	0.4	0.08	0.0158	0.0158	LOCAL_INVERSION:+:-:[65],AC007682.1->chr2:51259739-52635055:+,NRXN1->chr2:50145643-51259674:-,neurexin_1	NCIH2171_LUNG	0.08	0.4	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	ARL15--CLVS1	1	1	ARL15	1151	chr5:53606262:-	CLVS1	24962	chr8:62366700:+	ONLY_REF_SPLICE	YES	17	478	0.11	0	0.0158	0.0158	ARL15->ADP_ribosylation_factor_like_GTPase_15,chr5:53179775-53606412:-,CLVS1->chr8:61969717-62414204:+,clavesin_1	NCIH2171_LUNG	0	0.11	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	DDX3Y--USP9Y	1	1	DDX3Y	1874	chrY:15016892:+	USP9Y	46436	chrY:14922114:+	ONLY_REF_SPLICE	NO	106	25	0.02	0.07	0.0158	0.0158	LOCAL_REARRANGEMENT:+:[43255],DDX3Y->DEAD-box_helicase_3,_Y-linked,chrY:15016019-15032390:+,USP9Y->chrY:14813160-14972764:+,ubiquitin_specific_peptidase_9,_Y-linked	NCIH2171_LUNG	0.02	0.07	0.0316	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	DLEU2--RNASEH2B	1	1	DLEU2	2589	chr13:50655959:-	RNASEH2B	16192	chr13:51501543:+	ONLY_REF_SPLICE	YES	183	42	0.01	0.05	0.0158	0.0158	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),RNASEH2B->chr13:51483814-51544592:+,ribonuclease_H2_subunit_B	NCIH2171_LUNG	0.01	0.05	0.0316	FALSE	0	1	0	4	0	FALSE	ACH-000525
NCIH2171_LUNG	EIF4G3--ENC1	1	1	EIF4G3	7239	chr1:21415631:-	ENC1	57541	chr5:73932323:-	ONLY_REF_SPLICE	YES	43	237	0.04	0.01	0.0158	0.0158	EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3,ENC1->Oncogene{Bushman},chr5:73923234-73937249:-,ectodermal-neural_cortex_1	NCIH2171_LUNG	0.01	0.04	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	MICAL3--BID	1	1	MICAL3	2388	chr22:18484159:-	BID	70154	chr22:18222254:-	ONLY_REF_SPLICE	NO	41	172	0.05	0.01	0.0158	0.0158	NEIGHBORS[12879],MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,BID->BH3_interacting_domain_death_agonist,Oncogene{Bushman},chr22:18216906-18257536:-	NCIH2171_LUNG	0.01	0.05	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	NFIA--SRP9	1	1	NFIA	1208	chr1:61331138:+	SRP9	31239	chr1:225965637:+	ONLY_REF_SPLICE	YES	15	42	0.12	0.05	0.0158	0.0158	NFIA->chr1:61330931-61928465:+,nuclear_factor_I_A,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	NCIH2171_LUNG	0.05	0.12	0.0316	TRUE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	PPP1CB--BRE	1	1	PPP1CB	1537	chr2:28975042:+	BRE	31984	chr2:28521205:+	ONLY_REF_SPLICE	YES	334	49	0.01	0.04	0.0158	0.0158	GTEx_FI:{Esophagus=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2]},GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta,BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+	NCIH2171_LUNG	0.01	0.04	0.0316	FALSE	1	0	0	2	0	FALSE	ACH-000525
NCIH2171_LUNG	RPL32P3--CPNE4	1	1	RPL32P3	4754	chr3:129112478:-	CPNE4	14831	chr3:131759165:-	ONLY_REF_SPLICE	YES	24	0	0.08	1	0.0158	0.0158	RPL32P3->chr3:129101765-129118498:-,ribosomal_protein_L32_pseudogene_3,CPNE4->chr3:131252399-132004254:-,copine_4	NCIH2171_LUNG	0.08	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000525
NCIH2171_LUNG	RSPRY1--FAM192A	1	1	RSPRY1	12923	chr16:57255327:+	FAM192A	26214	chr16:57212764:-	ONLY_REF_SPLICE	YES	51	133	0.04	0.01	0.0158	0.0158	LOCAL_INVERSION:+:-:[21],RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	NCIH2171_LUNG	0.01	0.04	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000525
NCIH2171_LUNG	SHFM1--SLC25A13	1	1	SHFM1	1204	chr7:96339000:-	SLC25A13	27185	chr7:95926263:-	ONLY_REF_SPLICE	YES	700	77	0	0.03	0.0158	0.0158	GTEx&tcga_normals:2/3694=0.05%,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13	NCIH2171_LUNG	0	0.03	0.0316	FALSE	0	0	0	2	0	FALSE	ACH-000525
NCIH2171_LUNG	SPINT2--SIPA1L3	1	1	SPINT2	2641	chr19:38755638:+	SIPA1L3	38567	chr19:38673159:+	ONLY_REF_SPLICE	YES	1338	43	0	0.04	0.0158	0.0158	LOCAL_REARRANGEMENT:+:[35663],SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2,SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3	NCIH2171_LUNG	0	0.04	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000525
RKN_SOFT_TISSUE	EIF4H--ELN	570	15	EIF4H	1198	chr7:73588772:+	ELN	32519	chr7:73477483:+	ONLY_REF_SPLICE	YES	9	0	0.98	1	5.7844	0.1522	EIF4H->chr7:73588575-73611431:+,eukaryotic_translation_initiation_factor_4H,ELN->Oncogene{Bushman},chr7:73442119-73484237:+,elastin	RKN_SOFT_TISSUE	0.98	1	5.9366	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	NCLN--GNA11	242	133	NCLN	3611	chr19:3193426:+	GNA11	18010	chr19:3110147:+	ONLY_REF_SPLICE	YES	130	179	0.74	0.68	2.4558	1.3497	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[61559],NCLN->chr19:3185561-3209573:+,nicalin,GNA11->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_11,Oncogene{Bushman},OncomapV4_panel,chr19:3094408-3124002:+	RKN_SOFT_TISSUE	0.68	0.74	3.8055	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	EIF4H--ELN	249	15	EIF4H	1198	chr7:73588772:+	ELN	31480	chr7:73475431:+	ONLY_REF_SPLICE	YES	9	0	0.97	1	2.5269	0.1522	EIF4H->chr7:73588575-73611431:+,eukaryotic_translation_initiation_factor_4H,ELN->Oncogene{Bushman},chr7:73442119-73484237:+,elastin	RKN_SOFT_TISSUE	0.97	1	2.6791	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	CCDC91--OVCH1-AS1	183	126	CCDC91	24767	chr12:28605587:+	OVCH1-AS1	37516	chr12:29614667:+	ONLY_REF_SPLICE	YES	238	0	0.56	1	1.8571	1.2787	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,OVCH1-AS1->OVCH1_antisense_RNA_1,chr12:29542227-29640421:+	RKN_SOFT_TISSUE	0.56	1	3.1358	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	TIMM23B--LINC00843	151	35	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5324	0.3552	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RKN_SOFT_TISSUE	1	1	1.8876	TRUE	508	994	45	981	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	PPP3CC--SLC39A14	138	76	PPP3CC	3311	chr8:22333137:+	SLC39A14	25379	chr8:22262209:+	ONLY_REF_SPLICE	YES	32	398	0.87	0.35	1.4004	0.7713	LOCAL_REARRANGEMENT:+:[6690],PPP3CC->chr8:22298332-22398652:+,protein_phosphatase_3_catalytic_subunit_gamma,SLC39A14->chr8:22224762-22291642:+,solute_carrier_family_39_member_14	RKN_SOFT_TISSUE	0.35	0.87	2.1717	TRUE	0	1	0	1	1	TRUE	ACH-000505
RKN_SOFT_TISSUE	TIMM23--RP11-464F9.1	96	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	212	5	0.33	0.95	0.9742	0.071	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RKN_SOFT_TISSUE	0.33	0.95	1.0452	TRUE	519	3926	326	965	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	76	79	PTP4A2	11185	chr1:32381496:-	CLDN16	23854	chr3:190088682:+	ONLY_REF_SPLICE	YES	675	0	0.19	1	0.7713	0.8017	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.19	1	1.573	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	NCLN--GNA11	75	37	NCLN	1652	chr19:3186212:+	GNA11	18010	chr19:3110147:+	ONLY_REF_SPLICE	YES	138	179	0.45	0.38	0.7611	0.3755	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[61559],NCLN->chr19:3185561-3209573:+,nicalin,GNA11->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_11,Oncogene{Bushman},OncomapV4_panel,chr19:3094408-3124002:+	RKN_SOFT_TISSUE	0.38	0.45	1.1366	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	CCDC91--OVCH1-AS1	73	22	CCDC91	24767	chr12:28605587:+	OVCH1-AS1	40054	chr12:29639819:+	ONLY_REF_SPLICE	YES	238	2	0.29	0.98	0.7408	0.2233	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,OVCH1-AS1->OVCH1_antisense_RNA_1,chr12:29542227-29640421:+	RKN_SOFT_TISSUE	0.29	0.98	0.9641	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	RFTN1--DAZL	67	18	RFTN1	3399	chr3:16535232:-	DAZL	34630	chr3:16633655:-	ONLY_REF_SPLICE	YES	119	0	0.42	1	0.6799	0.1827	YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],LOCAL_REARRANGEMENT:-:[72766],RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,DAZL->chr3:16628299-16711813:-,deleted_in_azoospermia_like	RKN_SOFT_TISSUE	0.42	1	0.8626	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	BCAT1--TSPAN11	45	18	BCAT1	10920	chr12:24995016:-	TSPAN11	28865	chr12:31106915:+	ONLY_REF_SPLICE	YES	647	0	0.09	1	0.4567	0.1827	{Klijn_CCL:Ovary=1},BCAT1->branched_chain_amino_acid_transaminase_1,chr12:24964295-25102393:-,TSPAN11->chr12:31079362-31149534:+,tetraspanin_11	RKN_SOFT_TISSUE	0.09	1	0.6394	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	CCDC91--OVCH1-AS1	19	94	CCDC91	24767	chr12:28605587:+	OVCH1-AS1	37578	chr12:29614729:+	INCL_NON_REF_SPLICE	YES	238	0	0.32	1	0.1928	0.9539	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,OVCH1-AS1->OVCH1_antisense_RNA_1,chr12:29542227-29640421:+	RKN_SOFT_TISSUE	0.32	1	1.1467	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	RP11-77I22.2--PKP2	35	26	RP11-77I22.2	1198	chr12:30908205:+	PKP2	12704	chr12:33003907:-	ONLY_REF_SPLICE	YES	4	1	0.94	0.98	0.3552	0.2638	RP11-77I22.2->chr12:30908008-30933673:+,PKP2->chr12:32943679-33049774:-,plakophilin_2	RKN_SOFT_TISSUE	0.94	0.98	0.619	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	MT-TA--MT-TC	38	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3856	0.0304	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RKN_SOFT_TISSUE	1	1	0.416	FALSE	462	80	0	856	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	ARHGEF12--POU2F3	33	17	ARHGEF12	4686	chr11:120278532:+	POU2F3	58808	chr11:120117158:+	ONLY_REF_SPLICE	YES	122	0	0.29	1	0.3349	0.1725	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[17134],ARHGEF12->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_12,chr11:120207787-120360645:+,POU2F3->POU_class_2_homeobox_3,chr11:120107349-120190653:+	RKN_SOFT_TISSUE	0.29	1	0.5074	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	NIPA2--POLA1	32	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3247	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	RKN_SOFT_TISSUE	1	1	0.3247	TRUE	46	1352	75	139	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	ZNF654--HMGB2	32	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3247	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RKN_SOFT_TISSUE	1	1	0.3247	TRUE	0	0	0	518	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	FN3KRP--FOXK2	24	23	FN3KRP	2828	chr17:80676933:+	FOXK2	29643	chr17:80559179:+	ONLY_REF_SPLICE	YES	114	117	0.29	0.29	0.2436	0.2334	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[72021],FN3KRP->chr17:80674559-80688204:+,fructosamine_3_kinase_related_protein,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	RKN_SOFT_TISSUE	0.29	0.29	0.477	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	CTD-2337A12.1--CAST	25	6	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	40	1	0.44	0.2537	0.0609	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	RKN_SOFT_TISSUE	0.44	1	0.3146	TRUE	347	1186	183	220	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	6	80	PTP4A2	11185	chr1:32381496:-	CLDN16	23831	chr3:190088659:+	INCL_NON_REF_SPLICE	YES	675	0	0.11	1	0.0609	0.8118	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.11	1	0.8727	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	19	26	PTP4A2	11185	chr1:32381496:-	CLDN16	27611	chr3:190120126:+	ONLY_REF_SPLICE	YES	675	49	0.06	0.48	0.1928	0.2638	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.06	0.48	0.4566	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	5	80	PTP4A2	11189	chr1:32381492:-	CLDN16	23854	chr3:190088682:+	INCL_NON_REF_SPLICE	YES	711	0	0.11	1	0.0507	0.8118	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.11	1	0.8625	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	NF2--RP11-782C8.2	23	7	NF2	4890	chr22:30038274:+	RP11-782C8.2	40586	chr1:143134483:-	INCL_NON_REF_SPLICE	YES	91	0	0.25	1	0.2334	0.071	NF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:29999545-30094587:+,neurofibromin_2_(merlin),RP11-782C8.2->chr1:143118704-143211070:-	RKN_SOFT_TISSUE	0.25	1	0.3044	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	KDM4D--AMOTL1	20	11	KDM4D	2483	chr11:94708912:+	AMOTL1	21236	chr11:94583279:+	ONLY_REF_SPLICE	YES	6	63	0.84	0.33	0.203	0.1116	LOCAL_REARRANGEMENT:+:[96927],KDM4D->chr11:94706845-94732682:+,lysine_demethylase_4D,AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+	RKN_SOFT_TISSUE	0.33	0.84	0.3146	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	FN3KRP--FOXK2	19	12	FN3KRP	1214	chr17:80674772:+	FOXK2	29643	chr17:80559179:+	ONLY_REF_SPLICE	YES	188	117	0.14	0.21	0.1928	0.1218	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[72021],FN3KRP->chr17:80674559-80688204:+,fructosamine_3_kinase_related_protein,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	RKN_SOFT_TISSUE	0.14	0.21	0.3146	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	SRP54--KIAA0391	20	3	SRP54	2259	chr14:35452421:+	KIAA0391	29434	chr14:35735933:+	ONLY_REF_SPLICE	YES	285	248	0.07	0.08	0.203	0.0304	LOCAL_INVERSION:+:+,chr14:[92279],SRP54->chr14:35451163-35498773:+,signal_recognition_particle_54kDa,KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+	RKN_SOFT_TISSUE	0.07	0.08	0.2334	TRUE	0	0	0	1	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	PPP3CC--SLC39A14	1	77	PPP3CC	3311	chr8:22333137:+	SLC39A14	21139	chr8:22236940:+	ONLY_REF_SPLICE	YES	32	397	0.71	0.16	0.0101	0.7814	LOCAL_REARRANGEMENT:+:[6690],PPP3CC->chr8:22298332-22398652:+,protein_phosphatase_3_catalytic_subunit_gamma,SLC39A14->chr8:22224762-22291642:+,solute_carrier_family_39_member_14	RKN_SOFT_TISSUE	0.16	0.71	0.7915	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	NPM1P24--SET	20	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.203	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RKN_SOFT_TISSUE	1	1	0.203	TRUE	0	0	0	434	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	CAMKK2--P2RX4	18	7	CAMKK2	7496	chr12:121706441:-	P2RX4	31988	chr12:121659716:+	ONLY_REF_SPLICE	YES	55	79	0.31	0.24	0.1827	0.071	LOCAL_INVERSION:-:+:[3588],CAMKK2->Oncogene{Bushman},calcium/calmodulin-dependent_protein_kinase_kinase_2,chr12:121675497-121736111:-,P2RX4->chr12:121647660-121671909:+,purinergic_receptor_P2X_4	RKN_SOFT_TISSUE	0.24	0.31	0.2537	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	C15orf57--CBX3	13	26	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	69	48	0.36	0.45	0.1319	0.2638	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RKN_SOFT_TISSUE	0.36	0.45	0.3957	TRUE	267	562	48	632	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	BICD1--RP11-50I19.1	18	2	BICD1	1710	chr12:32260478:+	RP11-50I19.1	25626	chr12:32160271:+	INCL_NON_REF_SPLICE	YES	475	0	0.04	1	0.1827	0.0203	LOCAL_REARRANGEMENT:+:[99400],BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,RP11-50I19.1->chr12:32160061-32160369:+	RKN_SOFT_TISSUE	0.04	1	0.203	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	GMEB1--TRNAU1AP	18	1	GMEB1	1108	chr1:28995351:+	TRNAU1AP	20015	chr1:28880152:+	ONLY_REF_SPLICE	YES	0	7	1	0.73	0.1827	0.0101	LOCAL_REARRANGEMENT:+:[90193],GMEB1->chr1:28995244-29045865:+,glucocorticoid_modulatory_element_binding_protein_1,TRNAU1AP->chr1:28879597-28905051:+,tRNA_selenocysteine_1_associated_protein_1	RKN_SOFT_TISSUE	0.73	1	0.1928	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	7	40	PTP4A2	11185	chr1:32381496:-	CLDN16	26404	chr3:190106026:+	INCL_NON_REF_SPLICE	YES	675	30	0.07	0.61	0.071	0.4059	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.07	0.61	0.4769	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	TSPAN15--HK1	16	4	TSPAN15	3695	chr10:71244971:+	HK1	29369	chr10:71124539:+	ONLY_REF_SPLICE	YES	26	206	0.43	0.09	0.1624	0.0406	LOCAL_REARRANGEMENT:+:[49591],TSPAN15->chr10:71211229-71267425:+,tetraspanin_15,HK1->chr10:71029740-71161638:+,hexokinase_1	RKN_SOFT_TISSUE	0.09	0.43	0.203	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	CCDC91--OVCH1-AS1	2	56	CCDC91	24767	chr12:28605587:+	OVCH1-AS1	38717	chr12:29617338:+	ONLY_REF_SPLICE	YES	238	71	0.2	0.45	0.0203	0.5683	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,OVCH1-AS1->OVCH1_antisense_RNA_1,chr12:29542227-29640421:+	RKN_SOFT_TISSUE	0.2	0.45	0.5886	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	TBC1D22A--ANKRD20A14P	15	1	TBC1D22A	1228	chr22:47158745:+	ANKRD20A14P	29451	chr1:142813101:+	ONLY_REF_SPLICE	YES	28	0	0.36	1	0.1522	0.0101	TBC1D22A->TBC1_domain_family_member_22A,chr22:47158518-47571336:+,ANKRD20A14P->ankyrin_repeat_domain_20_family_member_A14,_pseudogene,chr1:142803532-142827235:+	RKN_SOFT_TISSUE	0.36	1	0.1623	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	MT-ND6--MT-TE	15	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1522	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RKN_SOFT_TISSUE	1	1	0.1522	FALSE	499	1288	110	792	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	C15orf57--CBX3	9	18	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	67	48	0.29	0.36	0.0913	0.1827	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RKN_SOFT_TISSUE	0.29	0.36	0.274	TRUE	267	562	48	632	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	3	40	PTP4A2	10092	chr1:32384571:-	CLDN16	23854	chr3:190088682:+	ONLY_REF_SPLICE	YES	652	0	0.06	1	0.0304	0.4059	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.06	1	0.4363	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	ARHGEF12--POU2F3	8	17	ARHGEF12	6313	chr11:120280159:+	POU2F3	58808	chr11:120117158:+	ONLY_REF_SPLICE	YES	134	0	0.16	1	0.0812	0.1725	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[17134],ARHGEF12->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_12,chr11:120207787-120360645:+,POU2F3->POU_class_2_homeobox_3,chr11:120107349-120190653:+	RKN_SOFT_TISSUE	0.16	1	0.2537	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	1	45	PTP4A2	11185	chr1:32381496:-	CLDN16	24963	chr3:190092317:+	ONLY_REF_SPLICE	NO	675	11	0.06	0.81	0.0101	0.4567	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.06	0.81	0.4668	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1015	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RKN_SOFT_TISSUE	1	1	0.1015	TRUE	0	0	0	434	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	RP11-120D5.1--MID1	8	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	22	0.81	0.37	0.0812	0.0507	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RKN_SOFT_TISSUE	0.37	0.81	0.1319	FALSE	16	356	14	466	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	RP11-680G10.1--GSE1	9	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	5	1	0.67	0.0913	0.0101	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RKN_SOFT_TISSUE	0.67	1	0.1014	TRUE	465	1949	224	605	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	RP11-680G10.1--GSE1	8	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0812	0.0203	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RKN_SOFT_TISSUE	0.91	1	0.1015	TRUE	458	1351	185	561	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	RPSAP52--HMGA2	8	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	5	393	0.67	0.02	0.0812	0.0203	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	RKN_SOFT_TISSUE	0.02	0.67	0.1015	FALSE	0	59	0	125	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	C15orf57--CBX3	3	21	C15orf57	2548	chr15:40854971:-	CBX3	19796	chr7:26241364:+	INCL_NON_REF_SPLICE	YES	67	48	0.26	0.33	0.0304	0.2131	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RKN_SOFT_TISSUE	0.26	0.33	0.2435	TRUE	267	562	48	632	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	MT-ND6--MT-TE	7	4	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.071	0.0406	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RKN_SOFT_TISSUE	1	1	0.1116	FALSE	499	1288	110	792	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	FN3KRP--FOXK2	2	23	FN3KRP	2828	chr17:80676933:+	FOXK2	27080	chr17:80553658:+	ONLY_REF_SPLICE	YES	114	127	0.18	0.16	0.0203	0.2334	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:+:[72021],FN3KRP->chr17:80674559-80688204:+,fructosamine_3_kinase_related_protein,FOXK2->chr17:80477589-80602538:+,forkhead_box_K2	RKN_SOFT_TISSUE	0.16	0.18	0.2537	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	MT-TA--MT-TC	7	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.071	0.0304	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RKN_SOFT_TISSUE	1	1	0.1014	FALSE	462	80	0	856	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	EIF1--RPS28	7	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.071	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	RKN_SOFT_TISSUE	1	1	0.071	TRUE	0	0	0	81	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	MT-ND6--MT-TE	7	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.071	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RKN_SOFT_TISSUE	1	1	0.071	FALSE	499	1288	110	792	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	MT-TA--MT-TC	6	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0.0406	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RKN_SOFT_TISSUE	1	1	0.1015	FALSE	462	80	0	856	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	EIF1--RPS28	6	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	RKN_SOFT_TISSUE	1	1	0.0609	TRUE	0	0	0	81	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	5	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0507	0.0406	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RKN_SOFT_TISSUE	0.9	1	0.0913	FALSE	407	2205	196	549	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	KDM4D--AMOTL1	4	7	KDM4D	1388	chr11:94707232:+	AMOTL1	21236	chr11:94583279:+	ONLY_REF_SPLICE	YES	5	63	0.69	0.15	0.0406	0.071	LOCAL_REARRANGEMENT:+:[96927],KDM4D->chr11:94706845-94732682:+,lysine_demethylase_4D,AMOTL1->angiomotin_like_1,chr11:94439597-94609918:+	RKN_SOFT_TISSUE	0.15	0.69	0.1116	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	1	19	PTP4A2	10092	chr1:32384571:-	CLDN16	24963	chr3:190092317:+	ONLY_REF_SPLICE	YES	652	11	0.03	0.65	0.0101	0.1928	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.03	0.65	0.2029	TRUE	0	0	0	1	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	NPM1P24--SET	5	2	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	45	1483	0.13	0	0.0507	0.0203	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RKN_SOFT_TISSUE	0	0.13	0.071	FALSE	0	0	0	434	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	C11orf68--DRAP1	5	0	C11orf68	1088	chr11:65686501:-	DRAP1	6884	chr11:65687301:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0507	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	RKN_SOFT_TISSUE	1	1	0.0507	TRUE	0	1	0	6	1	TRUE	ACH-000505
RKN_SOFT_TISSUE	NRIP1--AF127936.7	4	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	47	0	0.13	1	0.0406	0.0304	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RKN_SOFT_TISSUE	0.13	1	0.071	FALSE	164	806	69	479	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	2	11	PTP4A2	10092	chr1:32384571:-	CLDN16	27611	chr3:190120126:+	ONLY_REF_SPLICE	YES	652	49	0.02	0.21	0.0203	0.1116	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.02	0.21	0.1319	TRUE	0	0	0	1	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	ARHGEF12--POU2F3	3	6	ARHGEF12	1198	chr11:120207984:+	POU2F3	58808	chr11:120117158:+	ONLY_REF_SPLICE	YES	78	0	0.1	1	0.0304	0.0609	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[17134],ARHGEF12->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_12,chr11:120207787-120360645:+,POU2F3->POU_class_2_homeobox_3,chr11:120107349-120190653:+	RKN_SOFT_TISSUE	0.1	1	0.0913	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	MT-ND6--MT-TE	3	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0.0609	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RKN_SOFT_TISSUE	1	1	0.0913	FALSE	499	1288	110	792	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	NPM1P24--SET	4	2	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	45	1474	0.12	0	0.0406	0.0203	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RKN_SOFT_TISSUE	0	0.12	0.0609	FALSE	0	0	0	434	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	1	13	PTP4A2	11185	chr1:32381496:-	CLDN16	28714	chr3:190122551:+	ONLY_REF_SPLICE	YES	675	81	0.02	0.15	0.0101	0.1319	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.02	0.15	0.142	TRUE	0	0	0	1	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	RP11-155G15.2--RP11-1E3.1	4	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0.0101	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	RKN_SOFT_TISSUE	1	1	0.0507	FALSE	46	201	11	112	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0406	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RKN_SOFT_TISSUE	1	1	0.0406	FALSE	462	80	0	856	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0406	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RKN_SOFT_TISSUE	1	1	0.0406	FALSE	292	1546	117	613	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0304	0.0406	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RKN_SOFT_TISSUE	0.88	1	0.071	FALSE	515	4851	409	746	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	NPM1P24--SET	3	2	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	YES	45	1580	0.1	0	0.0304	0.0203	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RKN_SOFT_TISSUE	0	0.1	0.0507	FALSE	0	0	0	434	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	PTP4A2--CLDN16	2	6	PTP4A2	11185	chr1:32381496:-	CLDN16	29883	chr3:190126103:+	ONLY_REF_SPLICE	YES	675	102	0.01	0.07	0.0203	0.0609	{Klijn_CCL:Ovary=1},PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2,CLDN16->chr3:190040330-190129932:+,claudin_16	RKN_SOFT_TISSUE	0.01	0.07	0.0812	FALSE	0	0	0	1	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	NPM1P24--SET	3	1	NPM1P24	1544	chr10:74677749:-	SET	12351	chr9:131456246:+	INCL_NON_REF_SPLICE	YES	45	1260	0.08	0	0.0304	0.0101	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RKN_SOFT_TISSUE	0	0.08	0.0405	FALSE	0	0	0	434	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	VIM-AS1--FSCN1	3	1	VIM-AS1	1555	chr10:17271430:-	FSCN1	9803	chr7:5632447:+	INCL_NON_REF_SPLICE	YES	8359	0	0	1	0.0304	0.0101	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1	RKN_SOFT_TISSUE	0	1	0.0405	FALSE	0	0	0	3	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	VIM-AS1--PSMA7	3	1	VIM-AS1	1641	chr10:17271344:-	PSMA7	11761	chr20:60716000:-	ONLY_REF_SPLICE	YES	2	3397	0.67	0	0.0304	0.0101	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,PSMA7->chr20:60711791-60718496:-,proteasome_subunit_alpha_7	RKN_SOFT_TISSUE	0	0.67	0.0405	FALSE	0	0	0	1	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	C11orf68--DRAP1	3	0	C11orf68	1087	chr11:65686502:-	DRAP1	6880	chr11:65687297:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	RKN_SOFT_TISSUE	1	1	0.0304	TRUE	0	1	0	6	1	TRUE	ACH-000505
RKN_SOFT_TISSUE	C11orf68--DRAP1	3	0	C11orf68	1070	chr11:65686519:-	DRAP1	6879	chr11:65687296:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0304	0	LOCAL_INVERSION:-:+:[140],C11orf68->chr11:65684279-65686588:-,chromosome_11_open_reading_frame_68,DRAP1->DR1_associated_protein_1,chr11:65686728-65689032:+	RKN_SOFT_TISSUE	1	1	0.0304	TRUE	0	1	0	6	1	TRUE	ACH-000505
RKN_SOFT_TISSUE	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	47	0	0.08	1	0.0203	0.0203	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RKN_SOFT_TISSUE	0.08	1	0.0406	FALSE	125	705	46	456	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	RPL23AP79--GPR50	2	1	RPL23AP79	2311	chr19:59086955:+	GPR50	16315	chrX:150348243:+	ONLY_REF_SPLICE	YES	97	0	0.03	1	0.0203	0.0101	RPL23AP79->chr19:59084870-59111168:+,ribosomal_protein_L23a_pseudogene_79,GPR50->G_protein-coupled_receptor_50,chrX:150345125-150349937:+	RKN_SOFT_TISSUE	0.03	1	0.0304	TRUE	0	0	0	1	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	AGPAT4--MAP3K4	2	0	AGPAT4	2391	chr6:161653068:-	MAP3K4	23935	chr6:161455291:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Thyroid=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[12594],AGPAT4->1-acylglycerol-3-phosphate_O-acyltransferase_4,chr6:161551011-161695093:-,MAP3K4->chr6:161412759-161538417:+,mitogen-activated_protein_kinase_kinase_kinase_4	RKN_SOFT_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	ANKRD36--KANSL3	2	0	ANKRD36	18699	chr2:97833504:+	KANSL3	77473	chr2:97274801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ANKRD36->ankyrin_repeat_domain_36,chr2:97779233-97930258:+,KANSL3->KAT8_regulatory_NSL_complex_subunit_3,chr2:97258907-97308524:-	RKN_SOFT_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	ARIH1--PKM	2	0	ARIH1	1689	chr15:72767355:+	PKM	30400	chr15:72511451:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellar_Hemisphere=1},ARIH1->ariadne_RBR_E3_ubiquitin_protein_ligase_1,chr15:72766667-72879692:+,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	RKN_SOFT_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	CLIP2--GS1-124K5.12	2	0	CLIP2	2448	chr7:73731997:+	GS1-124K5.12	33127	chr7:66019824:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	CLIP2->CAP-Gly_domain_containing_linker_protein_2,chr7:73703805-73820273:+,GS1-124K5.12->chr7:66010634-66057373:-	RKN_SOFT_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	ERP29--MAPKAPK5	2	0	ERP29	1294	chr12:112451413:+	MAPKAPK5	18949	chr12:112318251:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	ERP29->chr12:112451120-112461255:+,endoplasmic_reticulum_protein_29,MAPKAPK5->chr12:112279782-112334343:+,mitogen-activated_protein_kinase-activated_protein_kinase_5	RKN_SOFT_TISSUE	1	1	0.0203	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RKN_SOFT_TISSUE	1	1	0.0203	FALSE	25	145	6	90	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	RP1-34H18.1--RP11-781A6.1	2	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	RKN_SOFT_TISSUE	1	1	0.0203	TRUE	94	160	11	37	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	RP11-319G9.5--WWOX	2	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0203	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	RKN_SOFT_TISSUE	1	1	0.0203	FALSE	154	425	28	76	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0101	0.0406	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RKN_SOFT_TISSUE	1	1	0.0507	FALSE	467	2173	244	435	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0101	0.0406	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RKN_SOFT_TISSUE	0.83	1	0.0507	FALSE	275	511	55	178	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	DOPEY2--ARHGAP8	1	2	DOPEY2	9063	chr21:37586854:+	ARHGAP8	57395	chr22:45197957:+	ONLY_REF_SPLICE	YES	10	1	0.23	0.75	0.0101	0.0203	DOPEY2->Oncogene{Bushman},chr21:37529080-37666572:+,dopey_family_member_2,ARHGAP8->Rho_GTPase_activating_protein_8,chr22:45098355-45258665:+	RKN_SOFT_TISSUE	0.23	0.75	0.0304	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	NF2--RP11-782C8.2	1	2	NF2	4890	chr22:30038274:+	RP11-782C8.2	42926	chr1:143121165:-	ONLY_REF_SPLICE	YES	91	0	0.03	1	0.0101	0.0203	NF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:29999545-30094587:+,neurofibromin_2_(merlin),RP11-782C8.2->chr1:143118704-143211070:-	RKN_SOFT_TISSUE	0.03	1	0.0304	TRUE	0	0	0	1	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	NF2--RP11-782C8.2	1	2	NF2	3806	chr22:30035201:+	RP11-782C8.2	42926	chr1:143121165:-	ONLY_REF_SPLICE	YES	96	0	0.03	1	0.0101	0.0203	NF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:29999545-30094587:+,neurofibromin_2_(merlin),RP11-782C8.2->chr1:143118704-143211070:-	RKN_SOFT_TISSUE	0.03	1	0.0304	TRUE	0	0	0	1	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	BICD1--FGFR1OP2	1	1	BICD1	12831	chr12:32490640:+	FGFR1OP2	33745	chr12:27116275:+	ONLY_REF_SPLICE	YES	114	314	0.02	0.01	0.0101	0.0101	BICD1->BICD_cargo_adaptor_1,chr12:32259769-32536567:+,FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+	RKN_SOFT_TISSUE	0.01	0.02	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	DANCR--NVL	1	1	DANCR	1530	chr4:53579126:+	NVL	29469	chr1:224455835:-	ONLY_REF_SPLICE	NO	177	49	0.01	0.04	0.0101	0.0101	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,NVL->chr1:224415036-224518089:-,nuclear_VCP-like	RKN_SOFT_TISSUE	0.01	0.04	0.0202	FALSE	0	0	0	3	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	KIRREL3--SIK3	1	1	KIRREL3	2916	chr11:126870351:-	SIK3	35232	chr11:116768033:-	ONLY_REF_SPLICE	NO	6	26	0.25	0.07	0.0101	0.0101	KIRREL3->chr11:126293254-126873355:-,kin_of_IRRE_like_3_(Drosophila),SIK3->Oncogene{Bushman},SIK_family_kinase_3,chr11:116714118-116969153:-	RKN_SOFT_TISSUE	0.07	0.25	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000505
RKN_SOFT_TISSUE	NPAT--DDX10	1	1	NPAT	1143	chr11:108093227:-	DDX10	43114	chr11:108709173:+	ONLY_REF_SPLICE	YES	27	49	0.07	0.04	0.0101	0.0101	NPAT->chr11:108027942-108093369:-,nuclear_protein,_co-activator_of_histone_transcription,DDX10->DEAD-box_helicase_10,Oncogene{Bushman},chr11:108535752-108811657:+	RKN_SOFT_TISSUE	0.04	0.07	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000505
RKN_SOFT_TISSUE	PAIP2--UBE2D2	1	1	PAIP2	1394	chr5:138677669:+	UBE2D2	13562	chr5:138979957:+	ONLY_REF_SPLICE	NO	214	110	0.01	0.02	0.0101	0.0101	PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	RKN_SOFT_TISSUE	0.01	0.02	0.0202	FALSE	0	2	0	1	2	FALSE	ACH-000505
PANC0504_PANCREAS	TIMM23B--LINC00843	107	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0761	0.181	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PANC0504_PANCREAS	1	1	1.2571	TRUE	508	994	45	981	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	86	2	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	11044	1533	0.01	0.05	0.8649	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0.01	0.05	0.885	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND6--MT-TE	67	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6738	0.0402	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0504_PANCREAS	1	1	0.714	FALSE	499	1288	110	792	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-TA--MT-TC	64	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6437	0.0503	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0504_PANCREAS	1	1	0.694	FALSE	462	80	0	856	0	FALSE	ACH-000093
PANC0504_PANCREAS	TIMM23--RP11-464F9.1	64	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	147	2	0.31	0.97	0.6437	0.0101	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PANC0504_PANCREAS	0.31	0.97	0.6538	TRUE	519	3926	326	965	0	FALSE	ACH-000093
PANC0504_PANCREAS	OR51S1--TP53I11	46	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4626	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	PANC0504_PANCREAS	1	1	0.4626	TRUE	402	216	10	229	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND6--MT-TE	31	25	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	6	0	0.9	1	0.3118	0.2514	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0504_PANCREAS	0.9	1	0.5632	FALSE	499	1288	110	792	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND6--MT-TE	29	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2917	0.0402	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0504_PANCREAS	1	1	0.3319	FALSE	499	1288	110	792	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	23	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	8633	4	0	0.86	0.2313	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	0.86	0.2414	FALSE	230	193	14	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	NCOA2--PRDM14	15	9	NCOA2	1106	chr8:71315935:-	PRDM14	38060	chr8:70982119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1509	0.0905	NEIGHBORS[38069],NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,PRDM14->PR_domain_14,chr8:70963886-70983928:-	PANC0504_PANCREAS	1	1	0.2414	FALSE	0	0	0	1	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND6--MT-TE	10	27	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1006	0.2715	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0504_PANCREAS	1	1	0.3721	FALSE	499	1288	110	792	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	16	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8510	6	0	0.74	0.1609	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	0.74	0.171	FALSE	230	198	14	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND6--MT-TE	7	36	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	6	0	0.88	1	0.0704	0.3621	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0504_PANCREAS	0.88	1	0.4325	FALSE	499	1288	110	792	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-TA--MT-TC	14	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1408	0.0503	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0504_PANCREAS	1	1	0.1911	FALSE	462	80	0	856	0	FALSE	ACH-000093
PANC0504_PANCREAS	NRIP1--AF127936.7	12	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.1207	0.0201	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0504_PANCREAS	0.93	1	0.1408	FALSE	292	1546	117	613	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND6--MT-TE	3	35	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	7	0	0.84	1	0.0302	0.352	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0504_PANCREAS	0.84	1	0.3822	FALSE	499	1288	110	792	0	FALSE	ACH-000093
PANC0504_PANCREAS	RP11-123O10.4--GRIP1	11	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1106	0.0302	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PANC0504_PANCREAS	1	1	0.1408	FALSE	416	2512	207	587	0	FALSE	ACH-000093
PANC0504_PANCREAS	MAP3K13--ETV5-AS1	10	1	MAP3K13	2430	chr3:185003431:+	ETV5-AS1	35069	chr3:185798660:+	INCL_NON_REF_SPLICE	YES	29	0	0.28	1	0.1006	0.0101	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,ETV5-AS1->ETV5_antisense_RNA_1,chr3:185796959-185798736:+	PANC0504_PANCREAS	0.28	1	0.1107	TRUE	0	0	0	1	0	TRUE	ACH-000093
PANC0504_PANCREAS	MT-ATP6--MT-CO1	10	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8157	16309	0	0	0.1006	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0504_PANCREAS	0	0	0.1107	FALSE	183	104	9	328	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ATP6--MT-CO1	9	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9769	16225	0	0	0.0905	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0504_PANCREAS	0	0	0.1006	FALSE	183	104	9	328	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND6--MT-TE	3	25	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	NO	3	0	0.9	1	0.0302	0.2514	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0504_PANCREAS	0.9	1	0.2816	FALSE	499	1288	110	792	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	8	4	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10267	37	0	0.24	0.0805	0.0402	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	0.24	0.1207	FALSE	231	215	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND6--MT-TE	9	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0905	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0504_PANCREAS	1	1	0.0905	FALSE	499	1288	110	792	0	FALSE	ACH-000093
PANC0504_PANCREAS	NRIP1--AF127936.7	7	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.45	1	0.0704	0.0603	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0504_PANCREAS	0.45	1	0.1307	FALSE	164	806	69	479	0	FALSE	ACH-000093
PANC0504_PANCREAS	JUP--MT-CO3	8	1	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	592	9917	0.01	0	0.0805	0.0101	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PANC0504_PANCREAS	0	0.01	0.0906	FALSE	0	0	0	33	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	8	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	11108	6	0	0.6	0.0805	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	0.6	0.0906	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-TA--MT-TC	7	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0704	0.0503	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0504_PANCREAS	1	1	0.1207	FALSE	462	80	0	856	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	8	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0805	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	1	1	0.0805	FALSE	231	204	14	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND6--MT-TE	8	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0805	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0504_PANCREAS	1	1	0.0805	FALSE	499	1288	110	792	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND6--MT-TE	3	19	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.1911	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0504_PANCREAS	1	1	0.2213	FALSE	499	1288	110	792	0	FALSE	ACH-000093
PANC0504_PANCREAS	C15orf57--CBX3	7	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	30	23	0.23	0.28	0.0704	0.0201	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PANC0504_PANCREAS	0.23	0.28	0.0905	TRUE	267	562	48	632	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	7	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11747	0	0	1	0.0704	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	1	0.0905	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	7	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10763	37	0	0.2	0.0704	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	0.2	0.0905	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	HSP90AB1--MT-RNR2	7	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1350	0	0.01	1	0.0704	0.0101	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0504_PANCREAS	0.01	1	0.0805	FALSE	13	9	0	364	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ATP6--MT-CO1	7	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	8098	15962	0	0	0.0704	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0504_PANCREAS	0	0	0.0805	FALSE	183	104	9	328	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	7	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8633	6	0	0.57	0.0704	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	0.57	0.0805	FALSE	230	193	14	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	7	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8631	37	0	0.18	0.0704	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	0.18	0.0805	FALSE	230	198	14	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	7	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9958	6	0	0.57	0.0704	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	0.57	0.0805	FALSE	231	205	14	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	7	1	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	5803	527	0	0.01	0.0704	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	0.01	0.0805	FALSE	230	193	14	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	6	4	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10621	37	0	0.21	0.0603	0.0402	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	0.21	0.1005	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0704	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0504_PANCREAS	1	1	0.0704	FALSE	462	80	0	856	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ATP6--MT-CO1	6	3	MT-ATP6	1265	chrM:8791:+	MT-CO1	5019	chrM:6241:+	INCL_NON_REF_SPLICE	YES	13180	14914	0	0	0.0603	0.0302	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0504_PANCREAS	0	0	0.0905	FALSE	183	104	9	328	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	6	2	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	10803	0	0	1	0.0603	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	1	0.0804	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1354	0	0.01	1	0.0603	0.0101	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PANC0504_PANCREAS	0.01	1	0.0704	FALSE	13	9	0	364	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	5	5	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1984	37	0.01	0.21	0.0503	0.0503	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0.01	0.21	0.1006	FALSE	216	209	16	281	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND6--MT-TE	4	9	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0402	0.0905	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0504_PANCREAS	0.93	1	0.1307	FALSE	499	1288	110	792	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ATP6--MT-CO1	5	3	MT-ATP6	1400	chrM:8926:+	MT-CO1	5381	chrM:6603:+	INCL_NON_REF_SPLICE	YES	9741	15794	0	0	0.0503	0.0302	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0504_PANCREAS	0	0	0.0805	FALSE	183	104	9	328	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	4	6	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	10859	0	0	1	0.0402	0.0603	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	1	0.1005	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	5	1	MT-ND4	1507	chrM:11266:+	MT-ATP8	5525	chrM:8512:+	INCL_NON_REF_SPLICE	YES	12141	1802	0	0	0.0503	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	0	0.0604	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND6--MT-TE	5	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0504_PANCREAS	1	1	0.0503	FALSE	499	1288	110	792	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0504_PANCREAS	1	1	0.0503	FALSE	499	1288	110	792	0	FALSE	ACH-000093
PANC0504_PANCREAS	RP11-475J5.6--MT-ND4L	5	0	RP11-475J5.6	1003	chr5:99386064:-	MT-ND4L	5565	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	RP11-475J5.6->chr5:99384692-99386066:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0504_PANCREAS	1	1	0.0503	FALSE	20	1	0	1	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ATP6--MT-CO1	4	3	MT-ATP6	1295	chrM:8821:+	MT-CO1	5307	chrM:6529:+	INCL_NON_REF_SPLICE	NO	13127	14820	0	0	0.0402	0.0302	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0504_PANCREAS	0	0	0.0704	FALSE	183	104	9	328	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	4	3	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	11054	0	0	1	0.0402	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	1	0.0704	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	RP11-475J5.6--MT-ND4L	3	7	RP11-475J5.6	1013	chr5:99386054:-	MT-ND4L	5569	chrM:10663:+	INCL_NON_REF_SPLICE	YES	0	3551	1	0	0.0302	0.0704	RP11-475J5.6->chr5:99384692-99386066:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0504_PANCREAS	0	1	0.1006	FALSE	20	1	0	1	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	4	2	MT-ND4	1503	chrM:11262:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	11923	0	0	1	0.0402	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	1	0.0603	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	3	6	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	11506	0	0	1	0.0302	0.0603	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	1	0.0905	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	3	6	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	10806	0	0	1	0.0302	0.0603	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	1	0.0905	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ATP6--MT-CO1	4	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	7604	14694	0	0	0.0402	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0504_PANCREAS	0	0	0.0503	FALSE	183	104	9	328	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	3	5	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3719	37	0	0.18	0.0302	0.0503	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	0.18	0.0805	FALSE	218	210	16	281	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	4	1	MT-ND4	1261	chrM:11020:+	MT-ATP8	5407	chrM:8394:+	INCL_NON_REF_SPLICE	YES	9332	0	0	1	0.0402	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	1	0.0503	FALSE	231	205	14	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	4	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	11026	0	0	1	0.0402	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	1	0.0503	FALSE	231	205	14	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	4	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8485	6	0	0.45	0.0402	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	0.45	0.0503	FALSE	230	193	14	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ATP6--MT-CO1	4	0	MT-ATP6	1380	chrM:8906:+	MT-CO1	5953	chrM:7175:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0504_PANCREAS	1	1	0.0402	FALSE	183	104	9	328	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	3	4	MT-ND4	1774	chrM:11533:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	NO	11129	0	0	1	0.0302	0.0402	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	1	0.0704	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	4	0	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	1	1	0.0402	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	3	4	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	10621	165	0	0.04	0.0302	0.0402	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	0.04	0.0704	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND5--MT-CO1	3	4	MT-ND5	2830	chrM:14166:+	MT-CO1	6455	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	16234	1	0	0.0302	0.0402	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0504_PANCREAS	0	1	0.0704	FALSE	8	10	2	9	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND5--MT-CO1	3	4	MT-ND5	2712	chrM:14048:+	MT-CO1	6449	chrM:6540:+	INCL_NON_REF_SPLICE	YES	16	15936	0.3	0	0.0302	0.0402	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0504_PANCREAS	0	0.3	0.0704	FALSE	8	12	2	9	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0504_PANCREAS	1	1	0.0402	FALSE	499	1288	110	792	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0504_PANCREAS	1	1	0.0402	FALSE	499	1288	110	792	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.0402	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PANC0504_PANCREAS	1	1	0.0704	FALSE	462	80	0	856	0	FALSE	ACH-000093
PANC0504_PANCREAS	IPO11--TMEM174	3	2	IPO11	2454	chr5:61708756:+	TMEM174	45588	chr5:72469887:+	ONLY_REF_SPLICE	YES	9	2	0.36	0.71	0.0302	0.0201	IPO11->chr5:61699799-61924409:+,importin_11,TMEM174->chr5:72469022-72470970:+,transmembrane_protein_174	PANC0504_PANCREAS	0.36	0.71	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000093
PANC0504_PANCREAS	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	9769	0	0	1	0.0302	0.0201	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0504_PANCREAS	0	1	0.0503	FALSE	182	97	9	327	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	11676	0	0	1	0.0302	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	1	0.0503	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1783	chrM:11542:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	11192	37	0	0.12	0.0302	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	0.12	0.0503	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	11716	0	0	1	0.0302	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PANC0504_PANCREAS	0	1	0.0503	FALSE	231	217	16	283	0	FALSE	ACH-000093
PANC0504_PANCREAS	RP11-114H23.1--RP11-114H23.2	3	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.0302	0.0201	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	PANC0504_PANCREAS	0.62	1	0.0503	FALSE	81	155	12	160	0	FALSE	ACH-000093
PANC0504_PANCREAS	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0.0201	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PANC0504_PANCREAS	1	1	0.0503	FALSE	515	4851	409	746	0	FALSE	ACH-000093
PANC0504_PANCREAS	APP--MT-ND2	3	1	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	1054	2699	0	0	0.0302	0.0101	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	PANC0504_PANCREAS	0	0	0.0403	FALSE	0	1	0	51	0	FALSE	ACH-000093
PANC0504_PANCREAS	MAP3K13--ETV5-AS1	3	1	MAP3K13	3578	chr3:185009548:+	ETV5-AS1	35069	chr3:185798660:+	INCL_NON_REF_SPLICE	YES	14	0	0.22	1	0.0302	0.0101	MAP3K13->chr3:185000729-185206885:+,mitogen-activated_protein_kinase_kinase_kinase_13,ETV5-AS1->ETV5_antisense_RNA_1,chr3:185796959-185798736:+	PANC0504_PANCREAS	0.22	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000093
PANC0504_PANCREAS	MT-ATP6--MT-CO1	3	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	9678	14607	0	0	0.0302	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0504_PANCREAS	0	0	0.0403	FALSE	183	104	9	328	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ATP6--MT-CO1	3	1	MT-ATP6	1098	chrM:8624:+	MT-CO1	5381	chrM:6603:+	INCL_NON_REF_SPLICE	YES	7196	15794	0	0	0.0302	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0504_PANCREAS	0	0	0.0403	FALSE	183	104	9	328	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ATP6--MT-CO1	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	8091	14053	0	0	0.0302	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0504_PANCREAS	0	0	0.0403	FALSE	183	104	9	328	0	FALSE	ACH-000093
PANC0504_PANCREAS	MT-ATP6--MT-CO1	3	1	MT-ATP6	1153	chrM:8679:+	MT-CO1	5318	chrM:6540:+	INCL_NON_REF_SPLICE	YES	9373	15920	0	0	0.0302	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	PANC0504_PANCREAS	0	0	0.0403	FALSE	183	104	9	328	0	FALSE	ACH-000093
PANC0504_PANCREAS	NCOA2--PRDM14	3	1	NCOA2	1106	chr8:71315935:-	PRDM14	39412	chr8:70980767:-	ONLY_REF_SPLICE	YES	0	4	1	0.5	0.0302	0.0101	NEIGHBORS[38069],NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,PRDM14->PR_domain_14,chr8:70963886-70983928:-	PANC0504_PANCREAS	0.5	1	0.0403	FALSE	0	0	0	1	0	FALSE	ACH-000093
PANC0504_PANCREAS	ETV5--EHHADH	3	0	ETV5	9388	chr3:185797606:-	EHHADH	26393	chr3:184966305:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	ETV5->ArcherDX_panel,ETS_variant_5,FoundationOne_panel,Oncogene{Bushman},chr3:185764097-185828107:-,EHHADH->chr3:184908412-184999778:-,enoyl-CoA,_hydratase/3-hydroxyacyl_CoA_dehydrogenase	PANC0504_PANCREAS	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000093
PANC0504_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PANC0504_PANCREAS	1	1	0.0302	FALSE	499	1288	110	792	0	FALSE	ACH-000093
PANC0504_PANCREAS	NRIP1--AF127936.7	2	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.38	1	0.0201	0.0402	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	PANC0504_PANCREAS	0.38	1	0.0603	FALSE	125	705	46	456	0	FALSE	ACH-000093
PANC0504_PANCREAS	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	PANC0504_PANCREAS	1	1	0.0302	TRUE	22	156	2	142	0	FALSE	ACH-000093
PANC0504_PANCREAS	RP11-475J5.6--MT-ND4L	3	0	RP11-475J5.6	1017	chr5:99386050:-	MT-ND4L	5619	chrM:10713:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	RP11-475J5.6->chr5:99384692-99386066:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0504_PANCREAS	1	1	0.0302	FALSE	20	1	0	1	0	FALSE	ACH-000093
PANC0504_PANCREAS	RP11-475J5.6--MT-ND4L	3	0	RP11-475J5.6	1009	chr5:99386058:-	MT-ND4L	5618	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	RP11-475J5.6->chr5:99384692-99386066:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PANC0504_PANCREAS	1	1	0.0302	FALSE	20	1	0	1	0	FALSE	ACH-000093
PANC0504_PANCREAS	SH3GL1--MT-ND4	3	0	SH3GL1	11758	chr19:4361367:-	MT-ND4	16225	chrM:11226:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	SH3GL1->Oncogene{Bushman},SH3_domain_containing_GRB2_like_1,chr19:4360367-4400544:-,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	PANC0504_PANCREAS	1	1	0.0302	FALSE	0	0	0	1	0	FALSE	ACH-000093
PANC0504_PANCREAS	RPSAP52--HMGA2	2	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	153	1	0.03	0.0201	0.0201	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	PANC0504_PANCREAS	0.03	1	0.0402	FALSE	0	59	0	125	0	FALSE	ACH-000093
PANC0504_PANCREAS	ANKS3--GLYR1	2	0	ANKS3	1223	chr16:4784157:-	GLYR1	26416	chr16:4882913:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},LOCAL_REARRANGEMENT:-:[68825],ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-,GLYR1->chr16:4853204-4897343:-,glyoxylate_reductase_1_homolog	PANC0504_PANCREAS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000093
PANC0504_PANCREAS	CMTM8--CMTM7	2	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	PANC0504_PANCREAS	1	1	0.0201	FALSE	118	557	29	88	0	FALSE	ACH-000093
PANC0504_PANCREAS	NUFIP1--SEPT2	2	0	NUFIP1	6266	chr13:45539979:-	SEPT2	31183	chr2:242287549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NUFIP1->chr13:45513384-45563618:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_1,SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2	PANC0504_PANCREAS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000093
PANC0504_PANCREAS	SGSM2--FER1L4	2	0	SGSM2	15714	chr17:2280362:+	FER1L4	23779	chr20:34194328:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	SGSM2->chr17:2240792-2284352:+,small_G_protein_signaling_modulator_2,FER1L4->chr20:34146507-34195484:-,fer-1_like_family_member_4,_pseudogene	PANC0504_PANCREAS	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000093
PANC0504_PANCREAS	IPO11--TMEM174	1	2	IPO11	5276	chr5:61718395:+	TMEM174	45588	chr5:72469887:+	ONLY_REF_SPLICE	YES	11	2	0.21	0.6	0.0101	0.0201	IPO11->chr5:61699799-61924409:+,importin_11,TMEM174->chr5:72469022-72470970:+,transmembrane_protein_174	PANC0504_PANCREAS	0.21	0.6	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000093
PANC0504_PANCREAS	NCOA2--PRDM14	1	2	NCOA2	2531	chr8:71314398:-	PRDM14	39412	chr8:70980767:-	ONLY_REF_SPLICE	YES	3	4	0.5	0.43	0.0101	0.0201	NEIGHBORS[38069],NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2,PRDM14->PR_domain_14,chr8:70963886-70983928:-	PANC0504_PANCREAS	0.43	0.5	0.0302	FALSE	0	0	0	1	0	FALSE	ACH-000093
PANC0504_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0101	0.0201	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PANC0504_PANCREAS	1	1	0.0302	FALSE	407	2205	196	549	0	FALSE	ACH-000093
PANC0504_PANCREAS	NBR2--ALDH3A2	1	1	NBR2	1161	chr17:41277787:+	ALDH3A2	18743	chr17:19559679:+	ONLY_REF_SPLICE	YES	24	110	0.08	0.02	0.0101	0.0101	NBR2->chr17:41277627-41305688:+,neighbor_of_BRCA1_gene_2_(non-protein_coding),ALDH3A2->aldehyde_dehydrogenase_3_family_member_A2,chr17:19551449-19580911:+	PANC0504_PANCREAS	0.02	0.08	0.0202	TRUE	0	2	0	4	0	FALSE	ACH-000093
PANC0504_PANCREAS	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	1261	89	0	0.02	0.0101	0.0101	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	PANC0504_PANCREAS	0	0.02	0.0202	FALSE	6	50	7	115	0	FALSE	ACH-000093
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BATF--TTLL5	752	197	BATF	2426	chr14:75991531:+	TTLL5	48845	chr14:76286350:+	ONLY_REF_SPLICE	YES	291	27	0.77	0.97	9.7731	2.5603	NEIGHBORS[86610],BATF->Oncogene{Bushman},basic_leucine_zipper_ATF-like_transcription_factor,chr14:75988768-76013358:+,TTLL5->chr14:76099968-76421421:+,tubulin_tyrosine_ligase_like_5	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.97	12.3334	FALSE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX29--AY269186.1	203	63	SNX29	2139	chr16:12093215:+	AY269186.1	41476	chr3:65642:+	ONLY_REF_SPLICE	YES	14	0	0.95	1	2.6382	0.8188	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,AY269186.1->chr3:65431-66175:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	3.457	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DPH7--PTP4A3	204	0	DPH7	1297	chr9:140473091:-	PTP4A3	14726	chr8:142431487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.6512	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:10=pct:2.7],Heart=[count:7=pct:2.8],Pituitary=[count:4=pct:7.7],Nerve=[count:2=pct:1.2],Esophagus=[count:2=pct:0.5],Colon=[count:2=pct:1.0],Lung=[count:2=pct:1.2],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Kidney=[count:1=pct:7.1],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},GTEx_v2:{count=46;pct=0.53%;dist=Artery_-_Tibial=9,Heart_-_Atrial_Appendage=9,Pituitary=6,Cells_-_EBV-transformed_lymphocytes=5,Artery_-_Aorta=3,Lung=2,Artery_-_Coronary=2,Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hypothalamus=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1,Testis=1},DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7,PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.6512	TRUE	29	213	5	17	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITPR1--AKAP13	164	36	ITPR1	4338	chr3:4562778:+	AKAP13	119861	chr15:86262307:+	ONLY_REF_SPLICE	YES	26	134	0.88	0.6	2.1314	0.4679	ITPR1->chr3:4535032-4889524:+,inositol_1,4,5-trisphosphate_receptor_type_1,AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.88	2.5993	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--GLUD1P2	127	11	IGH@	95370	chr14:106329408:-	GLUD1P2	141193	chr10:48980202:+	ONLY_REF_SPLICE	YES	2	1	0.99	0.99	1.6505	0.143	IGH@->Oncogene{Bushman},GLUD1P2->chr10:48952491-48980269:+,glutamate_dehydrogenase_1_pseudogene_2	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	0.99	1.7935	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BATF--TTLL5	72	221	BATF	2426	chr14:75991531:+	TTLL5	46547	chr14:76259256:+	ONLY_REF_SPLICE	YES	291	3	0.5	0.99	0.9357	2.8722	NEIGHBORS[86610],BATF->Oncogene{Bushman},basic_leucine_zipper_ATF-like_transcription_factor,chr14:75988768-76013358:+,TTLL5->chr14:76099968-76421421:+,tubulin_tyrosine_ligase_like_5	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.99	3.8079	FALSE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BATF--TTLL5	51	221	BATF	2426	chr14:75991531:+	TTLL5	46550	chr14:76259259:+	ONLY_REF_SPLICE	YES	291	3	0.48	0.99	0.6628	2.8722	NEIGHBORS[86610],BATF->Oncogene{Bushman},basic_leucine_zipper_ATF-like_transcription_factor,chr14:75988768-76013358:+,TTLL5->chr14:76099968-76421421:+,tubulin_tyrosine_ligase_like_5	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.99	3.535	FALSE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	76	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9877	0.2339	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.2216	TRUE	508	994	45	981	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSDL2--PTBP3	80	0	HSDL2	1244	chr9:115142460:+	PTBP3	21491	chr9:115060196:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.0397	0	LOCAL_INVERSION:+:-:[46270],HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2,PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0397	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FMNL1--SMURF2	66	12	FMNL1	6407	chr17:43311567:+	SMURF2	41491	chr17:62547822:-	ONLY_REF_SPLICE	YES	48	16	0.62	0.83	0.8577	0.156	FMNL1->chr17:43298811-43324687:+,formin_like_1,SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.83	1.0137	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTSLP1--IGH@	63	14	CTSLP1	1099	chr10:89149862:-	IGH@	133815	chr14:106054731:-	INCL_NON_REF_SPLICE	YES	0	5	1	0.94	0.8188	0.1819	CTSLP1->cathepsin_L_pseudogene_1,chr10:89146442-89149960:-,IGH@->Oncogene{Bushman}	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	1.0007	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX8--MAD1L1	63	3	SNX8	3400	chr7:2353963:-	MAD1L1	61693	chr7:1855864:-	ONLY_REF_SPLICE	YES	13	47	0.84	0.58	0.8188	0.039	NEIGHBORS[18527],SNX8->chr7:2291405-2393953:-,sorting_nexin_8,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	0.84	0.8578	FALSE	0	0	0	6	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BATF--TTLL5	6	198	BATF	2426	chr14:75991531:+	TTLL5	47733	chr14:76269485:+	INCL_NON_REF_SPLICE	YES	291	26	0.41	0.89	0.078	2.5732	NEIGHBORS[86610],BATF->Oncogene{Bushman},basic_leucine_zipper_ATF-like_transcription_factor,chr14:75988768-76013358:+,TTLL5->chr14:76099968-76421421:+,tubulin_tyrosine_ligase_like_5	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.89	2.6512	FALSE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX29--AY269186.1	33	68	SNX29	2139	chr16:12093215:+	AY269186.1	41269	chr3:65435:+	INCL_NON_REF_SPLICE	YES	14	0	0.88	1	0.4289	0.8837	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,AY269186.1->chr3:65431-66175:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	1.3126	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	43	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5588	0.026	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5848	FALSE	462	80	0	856	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	42	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	229	3	0.16	0.93	0.5458	0.013	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.93	0.5588	TRUE	519	3926	326	965	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--GLUD1P2	41	4	IGH@	94754	chr14:106330024:-	GLUD1P2	141193	chr10:48980202:+	ONLY_REF_SPLICE	YES	2	1	0.96	0.98	0.5328	0.052	IGH@->Oncogene{Bushman},GLUD1P2->chr10:48952491-48980269:+,glutamate_dehydrogenase_1_pseudogene_2	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.98	0.5848	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAPLN--KIAA0513	36	16	PAPLN	12655	chr14:73726253:+	KIAA0513	31368	chr16:85105389:+	ONLY_REF_SPLICE	YES	3	4	0.95	0.93	0.4679	0.2079	PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein,KIAA0513->KIAA0513,chr16:85061375-85127836:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.95	0.6758	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--GLUD1P2	39	3	IGH@	94353	chr14:106330425:-	GLUD1P2	141193	chr10:48980202:+	ONLY_REF_SPLICE	YES	2	1	0.95	0.98	0.5069	0.039	IGH@->Oncogene{Bushman},GLUD1P2->chr10:48952491-48980269:+,glutamate_dehydrogenase_1_pseudogene_2	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	0.98	0.5459	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDCD1LG2--IGH@	31	13	PDCD1LG2	7089	chr9:5563211:+	IGH@	12603	chr14:107283096:-	ONLY_REF_SPLICE	YES	72	3	0.38	0.94	0.4029	0.169	PDCD1LG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:5510545-5571282:+,programmed_cell_death_1_ligand_2,IGH@->Oncogene{Bushman}	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.94	0.5719	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GOSR1--DCAKD	31	12	GOSR1	7218	chr17:28811319:+	DCAKD	26560	chr17:43112367:-	ONLY_REF_SPLICE	YES	87	18	0.33	0.7	0.4029	0.156	GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1,DCAKD->chr17:43100708-43138473:-,dephospho-CoA_kinase_domain_containing	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.7	0.5589	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GMDS--FKBP5	30	5	GMDS	8873	chr6:1960101:-	FKBP5	30378	chr6:35565181:-	ONLY_REF_SPLICE	YES	30	66	0.54	0.35	0.3899	0.065	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,FKBP5->FK506_binding_protein_5,chr6:35541362-35696360:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.54	0.4549	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BIRC6--TTC27	28	8	BIRC6	4973	chr2:32614011:+	TTC27	90883	chr2:32875198:+	ONLY_REF_SPLICE	YES	30	15	0.55	0.71	0.3639	0.104	{Klijn_CCL:Colo-Rectal=1},NEIGHBORS[9133],BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.71	0.4679	FALSE	0	1	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERLEC1--ACYP2	28	7	ERLEC1	1329	chr2:54014509:+	ACYP2	36167	chr2:54531825:+	ONLY_REF_SPLICE	YES	159	18	0.18	0.66	0.3639	0.091	ERLEC1->chr2:54014181-54045956:+,endoplasmic_reticulum_lectin_1,ACYP2->acylphosphatase_2,chr2:54197975-54532437:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.66	0.4549	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--GLUD1P2	28	3	IGH@	93161	chr14:106331617:-	GLUD1P2	141193	chr10:48980202:+	ONLY_REF_SPLICE	YES	4	1	0.89	0.97	0.3639	0.039	IGH@->Oncogene{Bushman},GLUD1P2->chr10:48952491-48980269:+,glutamate_dehydrogenase_1_pseudogene_2	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.97	0.4029	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	26	10	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3379	0.13	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4679	FALSE	499	1288	110	792	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCAKD--CUEDC1	24	6	DCAKD	1218	chr17:43138256:-	CUEDC1	16050	chr17:55963240:-	ONLY_REF_SPLICE	YES	8	0	0.79	1	0.3119	0.078	DCAKD->chr17:43100708-43138473:-,dephospho-CoA_kinase_domain_containing,CUEDC1->CUE_domain_containing_1,Oncogene{Bushman},chr17:55938604-56032684:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	0.3899	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UHRF2--KDM4C	23	9	UHRF2	15827	chr9:6493932:+	KDM4C	36655	chr9:6849507:+	ONLY_REF_SPLICE	YES	99	51	0.24	0.39	0.2989	0.117	UHRF2->Oncogene{Bushman},chr9:6413151-6507054:+,ubiquitin_like_with_PHD_and_ring_finger_domains_2,KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.39	0.4159	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DTL--PPP2R5A	19	18	DTL	4858	chr1:212220759:+	PPP2R5A	28627	chr1:212502477:+	ONLY_REF_SPLICE	YES	151	74	0.2	0.33	0.2469	0.2339	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.33	0.4808	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COMMD1--B3GNT2	19	6	COMMD1	9512	chr2:62363114:+	B3GNT2	17072	chr2:62449347:+	ONLY_REF_SPLICE	YES	7	9	0.78	0.74	0.2469	0.078	NEIGHBORS[48866],COMMD1->chr2:62115859-62374382:+,copper_metabolism_domain_containing_1,B3GNT2->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_2,chr2:62423248-62451866:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	0.78	0.3249	FALSE	0	4	0	4	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-319G9.5--WWOX	19	5	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	47	1	0.34	0.2469	0.065	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	1	0.3119	FALSE	154	425	28	76	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BATF--TTLL5	4	60	BATF	2426	chr14:75991531:+	TTLL5	50607	chr14:76330010:+	ONLY_REF_SPLICE	YES	291	107	0.18	0.37	0.052	0.7798	NEIGHBORS[86610],BATF->Oncogene{Bushman},basic_leucine_zipper_ATF-like_transcription_factor,chr14:75988768-76013358:+,TTLL5->chr14:76099968-76421421:+,tubulin_tyrosine_ligase_like_5	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.37	0.8318	FALSE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCAKD--CUEDC1	15	10	DCAKD	2519	chr17:43128729:-	CUEDC1	16050	chr17:55963240:-	ONLY_REF_SPLICE	YES	17	0	0.6	1	0.1949	0.13	DCAKD->chr17:43100708-43138473:-,dephospho-CoA_kinase_domain_containing,CUEDC1->CUE_domain_containing_1,Oncogene{Bushman},chr17:55938604-56032684:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.3249	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FNBP1--C9orf78	16	4	FNBP1	1243	chr9:132805231:-	C9orf78	28746	chr9:132597045:-	ONLY_REF_SPLICE	YES	98	263	0.17	0.07	0.2079	0.052	NEIGHBORS[51324],FNBP1->Oncogene{Bushman},chr9:132649466-132805473:-,formin_binding_protein_1,C9orf78->chr9:132589569-132598142:-,chromosome_9_open_reading_frame_78	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.17	0.2599	FALSE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXDC1--TAF13	17	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2209	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2209	TRUE	7	10	0	216	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	10	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.169	0.13	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.299	FALSE	499	1288	110	792	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.13	0.1949	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.3249	FALSE	499	1288	110	792	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDCD1LG2--IGH@	9	13	PDCD1LG2	7093	chr9:5563215:+	IGH@	12603	chr14:107283096:-	INCL_NON_REF_SPLICE	YES	78	3	0.22	0.88	0.117	0.169	PDCD1LG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:5510545-5571282:+,programmed_cell_death_1_ligand_2,IGH@->Oncogene{Bushman}	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.88	0.286	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MICAL1--AK9	10	5	MICAL1	1305	chr6:109786867:-	AK9	49935	chr6:109837845:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.13	0.065	LOCAL_REARRANGEMENT:-:[26888],MICAL1->chr6:109765265-109787171:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_1,AK9->adenylate_kinase_9,chr6:109814059-110012420:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.195	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSDL2--PTBP3	11	0	HSDL2	1244	chr9:115142460:+	PTBP3	20457	chr9:115092754:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.143	0	LOCAL_INVERSION:+:-:[46270],HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2,PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.143	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAP2K1--SMAD6	8	1	MAP2K1	1611	chr15:66679765:+	SMAD6	21934	chr15:67004006:+	ONLY_REF_SPLICE	YES	67	1	0.12	0.9	0.104	0.013	MAP2K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr15:66679155-66784650:+,mitogen-activated_protein_kinase_kinase_1,SMAD6->SMAD_family_member_6,chr15:66994566-67074338:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.9	0.117	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF267--RP11-426C22.5	8	1	ZNF267	4304	chr16:31896577:+	RP11-426C22.5	19363	chr16:29228802:+	ONLY_REF_SPLICE	YES	112	4	0.07	0.69	0.104	0.013	ZNF267->chr16:31885079-31928668:+,zinc_finger_protein_267,RP11-426C22.5->chr16:29127448-29229181:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.69	0.117	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GINM1--PCMT1	6	7	GINM1	1241	chr6:149887670:+	PCMT1	17923	chr6:150111090:+	ONLY_REF_SPLICE	YES	34	242	0.28	0.05	0.078	0.091	GINM1->chr6:149887430-149912884:+,glycoprotein_integral_membrane_1,PCMT1->chr6:150070579-150132556:+,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.28	0.169	TRUE	0	1	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCAKD--CUEDC1	6	6	DCAKD	2327	chr17:43128921:-	CUEDC1	16050	chr17:55963240:-	ONLY_REF_SPLICE	YES	13	0	0.48	1	0.078	0.078	DCAKD->chr17:43100708-43138473:-,dephospho-CoA_kinase_domain_containing,CUEDC1->CUE_domain_containing_1,Oncogene{Bushman},chr17:55938604-56032684:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	0.156	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	7	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	34	0.8	0.19	0.091	0.013	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.8	0.104	FALSE	16	356	14	466	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BATF--TTLL5	7	0	BATF	2426	chr14:75991531:+	TTLL5	58177	chr14:76420767:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.091	0	NEIGHBORS[86610],BATF->Oncogene{Bushman},basic_leucine_zipper_ATF-like_transcription_factor,chr14:75988768-76013358:+,TTLL5->chr14:76099968-76421421:+,tubulin_tyrosine_ligase_like_5	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.091	FALSE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERLEC1--ACYP2	5	8	ERLEC1	1329	chr2:54014509:+	ACYP2	34010	chr2:54450134:+	ONLY_REF_SPLICE	YES	159	18	0.08	0.42	0.065	0.104	ERLEC1->chr2:54014181-54045956:+,endoplasmic_reticulum_lectin_1,ACYP2->acylphosphatase_2,chr2:54197975-54532437:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.42	0.169	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAP2K1--RP11-321F6.1	7	0	MAP2K1	1611	chr15:66679765:+	RP11-321F6.1	18998	chr15:66956700:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.091	0	NEIGHBORS[89878],MAP2K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr15:66679155-66784650:+,mitogen-activated_protein_kinase_kinase_1,RP11-321F6.1->chr15:66874528-66978132:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.091	FALSE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-345J4.8--DHX29	6	4	RP11-345J4.8	1188	chr16:29606208:-	DHX29	36886	chr5:54585256:-	ONLY_REF_SPLICE	YES	7	40	0.59	0.2	0.078	0.052	RP11-345J4.8->chr16:29538889-29606395:-,DHX29->DEAH-box_helicase_29,chr5:54552073-54603550:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.59	0.13	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DTL--PPP2R5A	2	18	DTL	4858	chr1:212220759:+	PPP2R5A	25290	chr1:212480125:+	ONLY_REF_SPLICE	YES	151	75	0.12	0.21	0.026	0.2339	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.21	0.2599	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0513--PAPLN	6	2	KIAA0513	4098	chr16:85101006:+	PAPLN	37362	chr14:73727864:+	ONLY_REF_SPLICE	YES	3	3	0.73	0.73	0.078	0.026	KIAA0513->KIAA0513,chr16:85061375-85127836:+,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.73	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.078	0.026	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.104	FALSE	462	80	0	856	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GOSR1--DCAKD	3	12	GOSR1	7218	chr17:28811319:+	DCAKD	26557	chr17:43112370:-	INCL_NON_REF_SPLICE	YES	87	19	0.15	0.44	0.039	0.156	GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1,DCAKD->chr17:43100708-43138473:-,dephospho-CoA_kinase_domain_containing	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.44	0.195	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABEP2--DSTN	5	4	RABEP2	2913	chr16:28936424:-	DSTN	21465	chr20:17581383:+	ONLY_REF_SPLICE	YES	21	159	0.3	0.05	0.065	0.052	RABEP2->chr16:28915742-28947847:-,rabaptin,_RAB_GTPase_binding_effector_protein_2,DSTN->chr20:17550508-17590564:+,destrin,_actin_depolymerizing_factor	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.3	0.117	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.065	FALSE	462	80	0	856	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	4	2	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	3	83	0.67	0.07	0.052	0.026	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.67	0.078	FALSE	0	0	0	19	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.052	0.026	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.078	FALSE	515	4851	409	746	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDYL2--RP11-525K10.3	4	1	CDYL2	1180	chr16:80838047:-	RP11-525K10.3	29631	chr16:80526662:-	ONLY_REF_SPLICE	YES	15	2	0.25	0.71	0.052	0.013	NEIGHBORS[34771],CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2,RP11-525K10.3->chr16:80188950-80597032:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.71	0.065	FALSE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	4	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.052	0.013	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.065	FALSE	46	201	11	112	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BATF--TTLL5	2	8	BATF	2426	chr14:75991531:+	TTLL5	51803	chr14:76349028:+	ONLY_REF_SPLICE	YES	291	209	0.03	0.05	0.026	0.104	NEIGHBORS[86610],BATF->Oncogene{Bushman},basic_leucine_zipper_ATF-like_transcription_factor,chr14:75988768-76013358:+,TTLL5->chr14:76099968-76421421:+,tubulin_tyrosine_ligase_like_5	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.05	0.13	FALSE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C16orf47--ZFHX3	4	0	C16orf47	2823	chr16:73164867:-	ZFHX3	18077	chr16:72863758:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.052	0	NEIGHBORS[66939],C16orf47->chr16:73160536-73178346:-,chromosome_16_open_reading_frame_47,ZFHX3->Oncogene{Bushman},chr16:72816784-73093597:-,zinc_finger_homeobox_3	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.052	FALSE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FMNL1--SMURF2	1	12	FMNL1	7056	chr17:43312216:+	SMURF2	41491	chr17:62547822:-	ONLY_REF_SPLICE	YES	45	16	0.22	0.45	0.013	0.156	FMNL1->chr17:43298811-43324687:+,formin_like_1,SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.45	0.169	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MICAL1--AK9	3	4	MICAL1	1275	chr6:109786897:-	AK9	49935	chr6:109837845:-	INCL_NON_REF_SPLICE	YES	20	0	0.26	1	0.039	0.052	LOCAL_REARRANGEMENT:-:[26888],MICAL1->chr6:109765265-109787171:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_1,AK9->adenylate_kinase_9,chr6:109814059-110012420:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.091	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRR16--CTD-2334D19.1	4	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.052	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.052	FALSE	56	216	12	147	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DTL--PPP2R5A	3	3	DTL	4858	chr1:212220759:+	PPP2R5A	29824	chr1:212506839:+	ONLY_REF_SPLICE	YES	151	88	0.04	0.06	0.039	0.039	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.06	0.078	TRUE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	3	2	AC104820.2	16783	chr2:182227645:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	3	76	0.62	0.06	0.039	0.026	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.62	0.065	FALSE	0	0	0	16	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABEP2--DSTN	2	6	RABEP2	3613	chr16:28935724:-	DSTN	21465	chr20:17581383:+	ONLY_REF_SPLICE	YES	33	159	0.2	0.05	0.026	0.078	RABEP2->chr16:28915742-28947847:-,rabaptin,_RAB_GTPase_binding_effector_protein_2,DSTN->chr20:17550508-17590564:+,destrin,_actin_depolymerizing_factor	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.2	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	3	2	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0.026	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.065	TRUE	13	49	2	38	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMURF2--ARSG	1	9	SMURF2	17516	chr17:62553726:-	ARSG	35794	chr17:66339745:+	ONLY_REF_SPLICE	YES	25	5	0.29	0.67	0.013	0.117	SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,ARSG->arylsulfatase_G,chr17:66255323-66418872:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.67	0.13	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRR16--CTD-2334D19.1	3	0	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.039	FALSE	21	45	1	60	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTGES3--MT-ND4L	3	0	PTGES3	1363	chr12:57081797:-	MT-ND4L	12459	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.039	FALSE	0	0	0	4	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UHRF2--KDM4C	2	4	UHRF2	15827	chr9:6493932:+	KDM4C	37849	chr9:6880012:+	ONLY_REF_SPLICE	YES	99	56	0.06	0.1	0.026	0.052	UHRF2->Oncogene{Bushman},chr9:6413151-6507054:+,ubiquitin_like_with_PHD_and_ring_finger_domains_2,KDM4C->Oncogene{Bushman},chr9:6720863-7175648:+,lysine_demethylase_4C	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.1	0.078	TRUE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERLEC1--ACYP2	1	7	ERLEC1	1329	chr2:54014509:+	ACYP2	35097	chr2:54494433:+	ONLY_REF_SPLICE	YES	159	18	0.05	0.31	0.013	0.091	ERLEC1->chr2:54014181-54045956:+,endoplasmic_reticulum_lectin_1,ACYP2->acylphosphatase_2,chr2:54197975-54532437:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.31	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BATF--TTLL5	2	2	BATF	2426	chr14:75991531:+	TTLL5	54620	chr14:76368485:+	ONLY_REF_SPLICE	NO	291	186	0.01	0.02	0.026	0.026	NEIGHBORS[86610],BATF->Oncogene{Bushman},basic_leucine_zipper_ATF-like_transcription_factor,chr14:75988768-76013358:+,TTLL5->chr14:76099968-76421421:+,tubulin_tyrosine_ligase_like_5	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.052	FALSE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABEP2--DSTN	1	6	RABEP2	3613	chr16:28935724:-	DSTN	20333	chr20:17572577:+	ONLY_REF_SPLICE	NO	33	199	0.17	0.03	0.013	0.078	RABEP2->chr16:28915742-28947847:-,rabaptin,_RAB_GTPase_binding_effector_protein_2,DSTN->chr20:17550508-17590564:+,destrin,_actin_depolymerizing_factor	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.17	0.091	TRUE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C16orf58--BCL7C	2	1	C16orf58	2546	chr16:31519085:-	BCL7C	23032	chr16:30846469:-	ONLY_REF_SPLICE	YES	69	1	0.04	0.75	0.026	0.013	C16orf58->chr16:31500792-31520630:-,chromosome_16_open_reading_frame_58,BCL7C->B-cell_CLL/lymphoma_7C,chr16:30844947-30906281:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.75	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRPK2--AHCYL2	2	1	SRPK2	2897	chr7:105029095:-	AHCYL2	49924	chr7:129062681:+	ONLY_REF_SPLICE	YES	41	78	0.07	0.04	0.026	0.013	SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,AHCYL2->adenosylhomocysteinase_like_2,chr7:128864864-129070052:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.07	0.039	TRUE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BIRC6--TTC27	2	0	BIRC6	1459	chr2:32582554:+	TTC27	98717	chr2:32958895:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	{Klijn_CCL:Colo-Rectal=1},NEIGHBORS[9133],BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--ERBB4	2	0	IKZF2	10408	chr2:213914437:-	ERBB4	33117	chr2:212812341:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDST4--SKIV2L	2	0	NDST4	14064	chr4:115766979:-	SKIV2L	28983	chr6:31933560:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	NDST4->N-deacetylase/N-sulfotransferase_4,chr4:115748919-116035032:-,SKIV2L->Ski2_like_RNA_helicase,chr6:31926857-31937532:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDCD1LG2--IGH@	2	0	PDCD1LG2	7089	chr9:5563211:+	IGH@	24986	chr14:107095433:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	PDCD1LG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:5510545-5571282:+,programmed_cell_death_1_ligand_2,IGH@->Oncogene{Bushman}	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDCD1LG2--IGH@	2	0	PDCD1LG2	7089	chr9:5563211:+	IGH@	26567	chr14:107083557:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	PDCD1LG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:5510545-5571282:+,programmed_cell_death_1_ligand_2,IGH@->Oncogene{Bushman}	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDCD1LG2--IGH@	2	0	PDCD1LG2	7089	chr9:5563211:+	IGH@	75300	chr14:106478411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	PDCD1LG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:5510545-5571282:+,programmed_cell_death_1_ligand_2,IGH@->Oncogene{Bushman}	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FNBP1--C9orf78	1	3	FNBP1	1243	chr9:132805231:-	C9orf78	29995	chr9:132595796:-	ONLY_REF_SPLICE	YES	98	361	0.04	0.01	0.013	0.039	NEIGHBORS[51324],FNBP1->Oncogene{Bushman},chr9:132649466-132805473:-,formin_binding_protein_1,C9orf78->chr9:132589569-132598142:-,chromosome_9_open_reading_frame_78	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.052	FALSE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GDAP1--RP11-758M4.1	1	2	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	24	0	0.11	1	0.013	0.026	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.039	TRUE	7	28	0	43	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0513--PAPLN	1	2	KIAA0513	4098	chr16:85101006:+	PAPLN	36915	chr14:73727417:+	ONLY_REF_SPLICE	YES	3	3	0.5	0.5	0.013	0.026	KIAA0513->KIAA0513,chr16:85061375-85127836:+,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.5	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDYL2--RP11-525K10.3	1	1	CDYL2	1180	chr16:80838047:-	RP11-525K10.3	34863	chr16:80193352:-	ONLY_REF_SPLICE	YES	15	5	0.12	0.29	0.013	0.013	NEIGHBORS[34771],CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2,RP11-525K10.3->chr16:80188950-80597032:-	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.29	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COMMD1--B3GNT2	1	1	COMMD1	6915	chr2:62228117:+	B3GNT2	17072	chr2:62449347:+	ONLY_REF_SPLICE	YES	156	9	0.01	0.18	0.013	0.013	NEIGHBORS[48866],COMMD1->chr2:62115859-62374382:+,copper_metabolism_domain_containing_1,B3GNT2->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_2,chr2:62423248-62451866:+	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.18	0.026	FALSE	1	6	2	5	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL1R1--IL18R1	1	1	IL1R1	4314	chr2:102721332:+	IL18R1	26159	chr2:102972743:+	ONLY_REF_SPLICE	NO	63	15	0.03	0.12	0.013	0.013	HGNC_GENEFAM,PROTCLUST,IL1R1->chr2:102681004-102796334:+,interleukin_1_receptor_type_1,IL18R1->chr2:102927989-103015218:+,interleukin_18_receptor_1	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.12	0.026	TRUE	0	0	0	1	0	FALSE	ACH-000702
L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRPK2--LINC01004	1	1	SRPK2	7398	chr7:104909253:-	LINC01004	32026	chr7:104623138:-	ONLY_REF_SPLICE	YES	62	2	0.03	0.5	0.013	0.013	NEIGHBORS[97660],SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,LINC01004->chr7:104590762-104653491:-,long_intergenic_non-protein_coding_RNA_1004	L1236_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.5	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000702
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	844	21	IGH@	94353	chr14:106330425:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	5	151	0.99	0.85	9.0232	0.2245	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.99	9.2477	TRUE	0	0	0	5	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	589	26	IGH@	94754	chr14:106330024:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	5	151	0.99	0.8	6.297	0.278	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	0.99	6.575	TRUE	0	0	0	6	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	223	812	IGKV2-30	1681	chr2:89544399:-	AC096579.7	7538	chr2:89157196:-	INCL_NON_REF_SPLICE	YES	740	0	0.58	1	2.3841	8.6811	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.58	1	11.0652	TRUE	4	29	1	1	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOTCH2--SRGAP2B	311	110	NOTCH2	1293	chr1:120611948:-	SRGAP2B	54124	chr1:144013901:+	ONLY_REF_SPLICE	YES	57	38	0.88	0.92	3.3249	1.176	NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.92	4.5009	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WHSC1--IGH@	284	115	WHSC1	9027	chr4:1906105:+	IGH@	155043	chr14:106209407:-	INCL_NON_REF_SPLICE	YES	136	6	0.75	0.99	3.0362	1.2295	WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,IGH@->Oncogene{Bushman}	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.99	4.2657	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	180	440	IGKV2-30	1587	chr2:89544493:-	AC096579.7	7538	chr2:89157196:-	INCL_NON_REF_SPLICE	YES	1423	0	0.3	1	1.9244	4.704	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	6.6284	TRUE	4	29	1	1	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	241	13	IGH@	93161	chr14:106331617:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	7	151	0.97	0.63	2.5765	0.139	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.97	2.7155	TRUE	0	0	0	5	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	179	80	IGH@	95370	chr14:106329408:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	5	151	0.98	0.63	1.9137	0.8553	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.63	0.98	2.769	TRUE	0	0	0	6	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	7	737	IGKV2-30	1669	chr2:89544411:-	AC096579.7	7542	chr2:89157192:-	INCL_NON_REF_SPLICE	YES	931	4	0.44	0.99	0.0748	7.8792	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.99	7.954	TRUE	4	29	1	1	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	172	55	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.8388	0.588	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	2.4268	TRUE	508	994	45	981	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	147	23	IGH@	94353	chr14:106330425:-	WHSC1	140829	chr4:1913818:+	ONLY_REF_SPLICE	YES	5	139	0.97	0.55	1.5716	0.2459	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.97	1.8175	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	U2AF2--ZNF524	134	67	U2AF2	10392	chr19:56181058:+	ZNF524	16758	chr19:56113441:+	ONLY_REF_SPLICE	YES	361	23	0.36	0.9	1.4326	0.7163	{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:+:[51008],U2AF2->U2_small_nuclear_RNA_auxiliary_factor_2,chr19:56165512-56186081:+,ZNF524->chr19:56111388-56114504:+,zinc_finger_protein_524	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.9	2.1489	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	115	28	IGH@	94754	chr14:106330024:-	WHSC1	140829	chr4:1913818:+	ONLY_REF_SPLICE	YES	5	139	0.97	0.51	1.2295	0.2993	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.97	1.5288	TRUE	0	0	0	2	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TOM1L2--NECAB2	88	75	TOM1L2	7886	chr17:17782941:-	NECAB2	30339	chr16:84012049:+	ONLY_REF_SPLICE	YES	72	3	0.69	0.98	0.9408	0.8018	{Klijn_CCL:Lymphoid=1},TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,NECAB2->N-terminal_EF-hand_calcium_binding_protein_2,chr16:84002237-84036381:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.98	1.7426	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	90	9	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	312	13	0.24	0.88	0.9622	0.0962	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.88	1.0584	TRUE	519	3926	326	965	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WHSC1--IGH@	92	0	WHSC1	9027	chr4:1906105:+	IGH@	163957	chr14:106111126:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9836	0	WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,IGH@->Oncogene{Bushman}	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9836	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TOM1L2--NECAB2	66	83	TOM1L2	7886	chr17:17782941:-	NECAB2	29314	chr16:84005756:+	ONLY_REF_SPLICE	YES	72	2	0.67	0.99	0.7056	0.8873	{Klijn_CCL:Lymphoid=1},TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,NECAB2->N-terminal_EF-hand_calcium_binding_protein_2,chr16:84002237-84036381:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.99	1.5929	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-312O7.2--NOTCH2NL	67	35	RP11-312O7.2	2914	chr1:206135293:-	NOTCH2NL	9633	chr1:145248813:+	ONLY_REF_SPLICE	YES	0	369	1	0.22	0.7163	0.3742	RP11-312O7.2->chr1:206135293-206137984:-,NOTCH2NL->chr1:145209119-145291972:+,notch_2_N-terminal_like	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	1.0905	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	25	83	IGH@	95370	chr14:106329408:-	WHSC1	140829	chr4:1913818:+	ONLY_REF_SPLICE	YES	5	139	0.96	0.44	0.2673	0.8873	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.96	1.1546	TRUE	0	0	0	2	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	41	13	IGH@	93161	chr14:106331617:-	WHSC1	140829	chr4:1913818:+	ONLY_REF_SPLICE	NO	7	139	0.89	0.28	0.4383	0.139	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.89	0.5773	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAI1--RP11-558A11.2	37	12	RAI1	5710	chr17:17627473:+	RP11-558A11.2	22111	chr16:84329430:-	ONLY_REF_SPLICE	YES	9	0	0.84	1	0.3956	0.1283	RAI1->chr17:17584787-17714767:+,retinoic_acid_induced_1,RP11-558A11.2->chr16:84329104-84330591:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.84	1	0.5239	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JAKMIP2--DPYSL3	33	12	JAKMIP2	4096	chr5:147040511:-	DPYSL3	35258	chr5:146804526:-	ONLY_REF_SPLICE	YES	24	24	0.65	0.65	0.3528	0.1283	{Klijn_CCL:Lymphoid=1},NEIGHBORS[78371],JAKMIP2->chr5:146967990-147162338:-,janus_kinase_and_microtubule_interacting_protein_2,DPYSL3->chr5:146770374-146889619:-,dihydropyrimidinase_like_3	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.65	0.4811	FALSE	0	0	0	1	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	34	7	IGH@	94353	chr14:106330425:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	YES	5	685	0.89	0.06	0.3635	0.0748	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.89	0.4383	TRUE	0	0	0	3	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	29	9	IGH@	94754	chr14:106330024:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	YES	5	685	0.88	0.05	0.31	0.0962	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.88	0.4062	TRUE	0	0	0	3	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	28	1	IGH@	94353	chr14:106330425:-	WHSC1	145147	chr4:1932353:+	ONLY_REF_SPLICE	YES	5	925	0.85	0.03	0.2993	0.0107	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.85	0.31	TRUE	0	0	0	3	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	26	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.278	0.0535	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3315	FALSE	462	80	0	856	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	27	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2887	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2887	TRUE	0	0	0	518	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	26	1	IGH@	94754	chr14:106330024:-	WHSC1	145147	chr4:1932353:+	ONLY_REF_SPLICE	YES	5	925	0.84	0.03	0.278	0.0107	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.84	0.2887	TRUE	0	0	0	3	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	19	25	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	146	16	0.23	0.73	0.2031	0.2673	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.73	0.4704	TRUE	267	562	48	632	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	25	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2673	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2673	TRUE	46	1352	75	139	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPFIBP1--RP11-993B23.3	19	4	PPFIBP1	4200	chr12:27731172:+	RP11-993B23.3	41842	chr12:28111452:+	INCL_NON_REF_SPLICE	YES	53	0	0.3	1	0.2031	0.0428	PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,RP11-993B23.3->chr12:28111450-28122746:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.2459	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	13	18	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	140	16	0.18	0.66	0.139	0.1924	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.66	0.3314	TRUE	267	562	48	632	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-30--AC096579.7	11	15	IGKV2-30	1079	chr2:89545001:-	AC096579.7	7538	chr2:89157196:-	ONLY_REF_SPLICE	YES	6	0	0.81	1	0.1176	0.1604	GTEx_FI:{Blood=[count:3=pct:1.7],Blood_Vessel=[count:3=pct:0.8],Pituitary=[count:1=pct:1.9],Lung=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},IGKV2-30->chr2:89544264-89545079:-,immunoglobulin_kappa_variable_2-30,AC096579.7->chr2:89130700-89165653:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.278	TRUE	4	29	1	1	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	12	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.96	0.96	0.1283	0.1069	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.96	0.2352	FALSE	515	4851	409	746	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	14	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1497	0.0107	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.1604	FALSE	499	1288	110	792	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	5	27	IGH@	95370	chr14:106329408:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	YES	5	685	0.86	0.04	0.0535	0.2887	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.86	0.3422	TRUE	0	0	0	3	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	9	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.0962	0.1176	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2138	FALSE	407	2205	196	549	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OTUD5--MT-ND4L	11	2	OTUD5	9682	chrX:48780079:-	MT-ND4L	13458	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2204	0	0.01	1	0.1176	0.0214	OTUD5->OTU_deubiquitinase_5,chrX:48779305-48815648:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.139	FALSE	0	0	0	6	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	10	5	IGH@	93161	chr14:106331617:-	WHSC1	143100	chr4:1919868:+	ONLY_REF_SPLICE	NO	7	685	0.68	0.02	0.1069	0.0535	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.68	0.1604	TRUE	0	0	0	2	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0962	0.0535	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1497	FALSE	462	80	0	856	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	18	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	140	16	0.14	0.58	0.0428	0.1924	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.58	0.2352	TRUE	267	562	48	632	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	3	21	IGH@	94353	chr14:106330425:-	WHSC1	141931	chr4:1918596:+	INCL_NON_REF_SPLICE	YES	5	157	0.83	0.13	0.0321	0.2245	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.83	0.2566	TRUE	0	0	0	5	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--UBB	8	0	TXNDC5	5859	chr6:7899816:-	UBB	19351	chr17:16285276:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0855	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,UBB->chr17:16284112-16286059:+,ubiquitin_B	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0855	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAF--RP11-679B19.2	7	3	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0748	0.0321	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1069	TRUE	48	25	3	38	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CFDP1--DOK4	5	7	CFDP1	9207	chr16:75425278:-	DOK4	27740	chr16:57509869:-	ONLY_REF_SPLICE	YES	77	11	0.13	0.52	0.0535	0.0748	CFDP1->chr16:75327596-75467383:-,craniofacial_development_protein_1,DOK4->chr16:57505863-57521239:-,docking_protein_4	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.52	0.1283	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	6	3	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	2	2	0.82	0.82	0.0641	0.0321	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.82	0.0962	TRUE	0	1	0	84	1	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIF21B--IGKV1-5	6	2	KIF21B	14304	chr1:200960803:-	IGKV1-5	35536	chr2:89247321:-	INCL_NON_REF_SPLICE	YES	372	22	0.02	0.27	0.0641	0.0214	KIF21B->chr1:200938520-200992828:-,kinesin_family_member_21B,IGKV1-5->chr2:89246819-89247475:-,immunoglobulin_kappa_variable_1-5	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.27	0.0855	TRUE	0	0	0	1	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0641	0.0107	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0748	FALSE	499	1288	110	792	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0.0107	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0748	FALSE	462	80	0	856	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLSTN2--PRKCA	5	4	CLSTN2	2422	chr3:139894915:+	PRKCA	36624	chr17:64492319:+	ONLY_REF_SPLICE	YES	7	4	0.56	0.69	0.0535	0.0428	CLSTN2->calsyntenin_2,chr3:139654027-140296239:+,PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	0.69	0.0963	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZSCAN2--WDR73	6	0	ZSCAN2	3779	chr15:85147564:+	WDR73	21965	chr15:85186954:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0641	0	{Klijn_CCL:Lymphoid=1},LOCAL_INVERSION:+:-:[14972],ZSCAN2->chr15:85144217-85171027:+,zinc_finger_and_SCAN_domain_containing_2,WDR73->WD_repeat_domain_73,chr15:85185999-85197574:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0641	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	5	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	15	0	0.32	1	0.0535	0.0214	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.0749	TRUE	0	42	0	133	42	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	5	2	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	1	2	0.88	0.78	0.0535	0.0214	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.88	0.0749	TRUE	0	1	0	84	1	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	5	1	IGH@	93161	chr14:106331617:-	WHSC1	145147	chr4:1932353:+	ONLY_REF_SPLICE	NO	7	925	0.46	0.01	0.0535	0.0107	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.46	0.0642	FALSE	0	0	0	2	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-TL1	5	1	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0535	0.0107	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0642	FALSE	210	95	5	49	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	5	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0428	0.0535	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.0963	FALSE	499	1288	110	792	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACO2--IGKV1-5	5	0	ACO2	14752	chr22:41920972:+	IGKV1-5	21930	chr2:89247319:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0535	0	ACO2->aconitase_2,chr22:41865129-41924993:+,IGKV1-5->chr2:89246819-89247475:-,immunoglobulin_kappa_variable_1-5	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0535	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	5	0	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	13792	chr6:73787045:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0535	0	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0535	FALSE	0	0	0	1	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0428	0.0428	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0856	FALSE	499	1288	110	792	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	11	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.93	0.93	0.0214	0.1176	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.93	0.139	FALSE	467	2173	244	435	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0321	0.0641	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0962	FALSE	462	80	0	856	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	4	2	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	6	2	0.5	0.75	0.0428	0.0214	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.75	0.0642	FALSE	0	9	0	55	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AL589743.1--RP11-536C10.17	4	1	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	22	0	0.19	1	0.0428	0.0107	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.0535	TRUE	0	33	0	45	33	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-TL1	3	5	MT-ND1	1342	chrM:3648:+	MT-TL1	5013	chrM:3286:+	INCL_NON_REF_SPLICE	YES	5	0	0.62	1	0.0321	0.0535	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.0856	FALSE	210	95	5	49	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-TY	4	0	MT-CO1	1064	chrM:5967:+	MT-TY	5520	chrM:5914:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0428	0	LOCAL_INVERSION:+:-:[13],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0428	FALSE	0	10	0	2	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0107	0.1283	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.139	FALSE	275	511	55	178	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	3	3	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	2	2	0.75	0.75	0.0321	0.0321	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.75	0.0642	TRUE	0	1	0	84	1	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOTCH2--SRGAP2B	1	10	NOTCH2	1293	chr1:120611948:-	SRGAP2B	55317	chr1:144053506:+	ONLY_REF_SPLICE	NO	57	86	0.16	0.11	0.0107	0.1069	NOTCH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:120454176-120612240:-,notch_2,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.16	0.1176	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	2	0.42	0.71	0.0321	0.0214	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.71	0.0535	FALSE	16	356	14	466	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KHDRBS1--EIF4G3	3	1	KHDRBS1	12018	chr1:32510991:+	EIF4G3	22870	chr1:21415706:-	ONLY_REF_SPLICE	YES	0	6	1	0.4	0.0321	0.0107	KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.0428	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZADH2--TSHZ1	3	1	ZADH2	1499	chr18:72920805:-	TSHZ1	22211	chr18:72997403:+	ONLY_REF_SPLICE	YES	91	11	0.04	0.27	0.0321	0.0107	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Brain_-_Hypothalamus=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[1407],ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2,TSHZ1->chr18:72922710-73001905:+,teashirt_zinc_finger_homeobox_1	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.27	0.0428	TRUE	0	4	0	5	1	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CFDP1--DOK4	1	8	CFDP1	11744	chr16:75396773:-	DOK4	27740	chr16:57509869:-	ONLY_REF_SPLICE	YES	74	11	0.11	0.45	0.0107	0.0855	CFDP1->chr16:75327596-75467383:-,craniofacial_development_protein_1,DOK4->chr16:57505863-57521239:-,docking_protein_4	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.45	0.0962	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0321	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0321	FALSE	292	1546	117	613	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IMMP2L--AC003088.1	2	1	IMMP2L	12890	chr7:110526649:-	AC003088.1	22075	chr7:110072963:-	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0214	0.0107	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0321	TRUE	0	1	0	2	1	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0214	0.0107	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.0321	FALSE	125	705	46	456	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0.0107	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0321	TRUE	62	24	1	171	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC011997.1--PLCL1	2	0	AC011997.1	3224	chr2:198636638:+	PLCL1	11793	chr2:198948482:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	NEIGHBORS[29879],AC011997.1->chr2:198557830-198639547:+,PLCL1->Oncogene{Bushman},chr2:198669426-199437305:+,phospholipase_C_like_1	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	FALSE	0	9	0	3	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC026202.3--ITGB3BP	2	0	AC026202.3	1375	chr3:5228640:-	ITGB3BP	18179	chr1:63920639:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	AC026202.3->chr3:5198590-5229014:-,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADAM22--PEG10	2	0	ADAM22	4172	chr7:87607727:+	PEG10	47545	chr7:94292646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	ADAM22->ADAM_metallopeptidase_domain_22,chr7:87563458-87832204:+,PEG10->Oncogene{Bushman},chr7:94285637-94299007:+,paternally_expressed_10	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHSY3--ZNF85	2	0	CHSY3	3444	chr5:129244053:+	ZNF85	20315	chr19:21131550:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,ZNF85->chr19:21106028-21133503:+,zinc_finger_protein_85	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--SRSF10	2	0	CPSF6	11046	chr12:69656342:+	SRSF10	30767	chr1:24294213:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF10->chr1:24291294-24307417:-,serine/arginine-rich_splicing_factor_10	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EMC2--SRSF1	2	0	EMC2	1098	chr8:109455927:+	SRSF1	21276	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FLJ27365--RASA3	2	0	FLJ27365	1052	chr22:46449800:+	RASA3	21089	chr13:114806570:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	FLJ27365->chr22:46449749-46509808:+,RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LIN52--RAPGEF2	2	0	LIN52	6088	chr14:74567941:+	RAPGEF2	52629	chr4:160279266:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	LIN52->chr14:74551499-74667936:+,lin-52_DREAM_MuvB_core_complex_component,RAPGEF2->Rap_guanine_nucleotide_exchange_factor_2,chr4:160025330-160281321:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED14--PHF8	2	0	MED14	3989	chrX:40585998:-	PHF8	44517	chrX:54049276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	MED14->chrX:40507558-40595110:-,mediator_complex_subunit_14,PHF8->PHD_finger_protein_8,chrX:53963109-54075391:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRCAM--IGJ	2	0	NRCAM	2633	chr7:108039880:-	IGJ	46708	chr4:71532231:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	NRCAM->Oncogene{Bushman},chr7:107788068-108097161:-,neuronal_cell_adhesion_molecule,IGJ->chr4:71521258-71547534:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTBP3--TEX30	2	0	PTBP3	3994	chr9:115060121:-	TEX30	26626	chr13:103422436:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	PTBP3->chr9:114980715-115095947:-,polypyrimidine_tract_binding_protein_3,TEX30->chr13:103418340-103426161:-,testis_expressed_30	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF19A--MTX2	2	0	RNF19A	4601	chr8:101322095:-	MTX2	24895	chr2:177161588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	RNF19A->chr8:101269288-101348446:-,ring_finger_protein_19A,_RBR_E3_ubiquitin_protein_ligase,MTX2->chr2:177134123-177202753:+,metaxin_2	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-304L19.5--SLC9A3R1	2	0	RP11-304L19.5	1216	chr16:2205144:-	SLC9A3R1	8717	chr17:72763075:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	RP11-304L19.5->chr16:2204798-2205359:-,SLC9A3R1->Oncogene{Bushman},SLC9A3_regulator_1,chr17:72744791-72765492:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SFSWAP--FAM120AOS	2	0	SFSWAP	1367	chr12:132195992:+	FAM120AOS	32764	chr9:96212881:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SFSWAP->chr12:132195626-132284282:+,splicing_factor,_suppressor_of_white-apricot_homolog,FAM120AOS->chr9:96208776-96215874:-,family_with_sequence_similarity_120A_opposite_strand	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNRPF--MLEC	2	0	SNRPF	1149	chr12:96252854:+	MLEC	14420	chr12:121131894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SNRPF->chr12:96252706-96297606:+,small_nuclear_ribonucleoprotein_polypeptide_F,MLEC->chr12:121124672-121139667:+,malectin	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUB1--SAR1B	2	0	SUB1	1284	chr5:32532022:+	SAR1B	26160	chr5:133959727:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	SUB1->SUB1_homolog,_transcriptional_regulator,chr5:32531739-32604185:+,SAR1B->chr5:133936834-133984961:-,secretion_associated_Ras_related_GTPase_1B	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF4--PSMD14	2	0	TCF4	42046	chr18:52921728:-	PSMD14	73971	chr2:162265348:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	TCF4->chr18:52889562-53332018:-,transcription_factor_4,PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF4--TXNL1	2	0	TCF4	27453	chr18:52988901:-	TXNL1	62278	chr18:54293688:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	TCF4->chr18:52889562-53332018:-,transcription_factor_4,TXNL1->chr18:54264439-54318831:-,thioredoxin_like_1	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNRC6B--IGL@	2	0	TNRC6B	6221	chr22:40574144:+	IGL@	106833	chr22:23237555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	TNRC6B->chr22:40440821-40731812:+,trinucleotide_repeat_containing_6B,IGL@->Oncogene{Bushman}	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TXNDC5--ZCCHC17	2	0	TXNDC5	6963	chr6:7895339:-	ZCCHC17	22527	chr1:31810022:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	TXNDC5->chr6:7881483-8026646:-,thioredoxin_domain_containing_5,ZCCHC17->chr1:31769842-31837783:+,zinc_finger_CCHC-type_containing_17	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBE3A--SNRPN	2	0	UBE3A	1493	chr15:25683636:-	SNRPN	29711	chr15:25207261:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1},UBE3A->Oncogene{Bushman},chr15:25582381-25684128:-,ubiquitin_protein_ligase_E3A,SNRPN->chr15:25068794-25223870:+,small_nuclear_ribonucleoprotein_polypeptide_N	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	2	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VPS13A--CBWD1	2	0	VPS13A	1452	chr9:79792720:+	CBWD1	110558	chr9:135030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0214	0	VPS13A->chr9:79792269-80036457:+,vacuolar_protein_sorting_13_homolog_A,CBWD1->COBW_domain_containing_1,chr9:121041-188979:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADM--APLF	1	2	ADM	1550	chr11:10326776:+	APLF	7986	chr2:68717322:+	ONLY_REF_SPLICE	YES	314	10	0.01	0.23	0.0107	0.0214	ADM->adrenomedullin,chr11:10326227-10328944:+,APLF->aprataxin_and_PNKP_like_factor,chr2:68694693-68858004:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.23	0.0321	FALSE	0	0	0	1	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EML4--COX7A2L	1	2	EML4	1287	chr2:42396776:+	COX7A2L	44768	chr2:42580483:-	ONLY_REF_SPLICE	NO	219	705	0.01	0	0.0107	0.0214	GTEx_v2:{count=2;pct=0.02%;dist=Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1},LOCAL_INVERSION:+:-:[998],EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,COX7A2L->chr2:42560686-42652228:-,cytochrome_c_oxidase_subunit_7A2_like	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0321	FALSE	0	4	0	1	2	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	2	IGH@	95370	chr14:106329408:-	WHSC1	145147	chr4:1932353:+	ONLY_REF_SPLICE	NO	5	925	0.38	0	0.0107	0.0214	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.38	0.0321	FALSE	0	0	0	3	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	1	2	RCC1	2916	chr1:28835413:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	16	209	0.16	0.01	0.0107	0.0214	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.16	0.0321	FALSE	1	10	0	18	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	1	2	RCC1	2920	chr1:28835417:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	16	209	0.16	0.01	0.0107	0.0214	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.16	0.0321	FALSE	1	10	0	18	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AGTPBP1--NAA35	1	1	AGTPBP1	1255	chr9:88356690:-	NAA35	39136	chr9:88576928:+	ONLY_REF_SPLICE	YES	48	90	0.04	0.02	0.0107	0.0107	AGTPBP1->ATP/GTP_binding_protein_1,chr9:88161455-88356944:-,NAA35->N(alpha)-acetyltransferase_35,_NatC_auxiliary_subunit,chr9:88556061-88637213:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0214	TRUE	0	0	0	1	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC91--ASUN	1	1	CCDC91	21147	chr12:28544344:+	ASUN	38790	chr12:27081838:-	ONLY_REF_SPLICE	YES	311	194	0.01	0.01	0.0107	0.0107	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,ASUN->asunder,_spermatogenesis_regulator,chr12:27058114-27091259:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGFR1OP2--ITPR2	1	1	FGFR1OP2	1328	chr12:27091643:+	ITPR2	17008	chr12:26943160:-	ONLY_REF_SPLICE	YES	298	55	0.01	0.04	0.0107	0.0107	{Klijn_CCL:Lung=1},FGFR1OP2->FGFR1_oncogene_partner_2,chr12:27091316-27119583:+,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0214	FALSE	0	0	0	2	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL1RAP--CLDN1	1	1	IL1RAP	1169	chr3:190232008:+	CLDN1	34498	chr3:190030825:-	ONLY_REF_SPLICE	YES	18	1	0.1	0.67	0.0107	0.0107	IL1RAP->chr3:190231840-190375843:+,interleukin_1_receptor_accessory_protein,CLDN1->chr3:190023490-190040264:-,claudin_1	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.67	0.0214	TRUE	0	2	0	3	0	TRUE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LARP1--STMN1	1	1	LARP1	19930	chr5:154191200:+	STMN1	29905	chr1:26231229:-	ONLY_REF_SPLICE	YES	333	17	0.01	0.11	0.0107	0.0107	LARP1->La_ribonucleoprotein_domain_family_member_1,chr5:154092462-154197167:+,STMN1->chr1:26210672-26233482:-,stathmin_1	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.11	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MFSD8--PLK4	1	1	MFSD8	3016	chr4:128878656:-	PLK4	22404	chr4:128806863:+	ONLY_REF_SPLICE	NO	34	54	0.06	0.04	0.0107	0.0107	LOCAL_INVERSION:-:+:[18610],MFSD8->chr4:128838960-128887150:-,major_facilitator_superfamily_domain_containing_8,PLK4->chr4:128802016-128820350:+,polo_like_kinase_4	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.06	0.0214	TRUE	0	0	0	1	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB18--MKX	1	1	RAB18	5856	chr10:27815818:+	MKX	21626	chr10:28024303:-	ONLY_REF_SPLICE	NO	307	149	0.01	0.01	0.0107	0.0107	RAB18->RAB18,_member_RAS_oncogene_family,chr10:27793197-27831143:+,MKX->chr10:27961804-28034989:-,mohawk_homeobox	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TANC1--XPO1	1	1	TANC1	4533	chr2:159954346:+	XPO1	43831	chr2:61761038:-	ONLY_REF_SPLICE	YES	136	222	0.01	0.01	0.0107	0.0107	TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TATDN1--DEPTOR	1	1	TATDN1	8556	chr8:125527987:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	NO	187	634	0.01	0	0.0107	0.0107	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0214	FALSE	0	0	0	6	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFR--GOLPH3	1	1	ZFR	1533	chr5:32444335:-	GOLPH3	28918	chr5:32143986:-	ONLY_REF_SPLICE	YES	196	65	0.01	0.03	0.0107	0.0107	ZFR->chr5:32354456-32444867:-,zinc_finger_RNA_binding_protein,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000588
KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZSCAN2--WDR73	1	1	ZSCAN2	3779	chr15:85147564:+	WDR73	20083	chr15:85189067:-	ONLY_REF_SPLICE	NO	26	145	0.07	0.01	0.0107	0.0107	{Klijn_CCL:Lymphoid=1},LOCAL_INVERSION:+:-:[14972],ZSCAN2->chr15:85144217-85171027:+,zinc_finger_and_SCAN_domain_containing_2,WDR73->WD_repeat_domain_73,chr15:85185999-85197574:-	KMS26_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.07	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000588
HCC15_LUNG	ALDH3A1--MT-ND4	415	0	ALDH3A1	5842	chr17:19645873:-	MT-ND4	13533	chrM:10874:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	4.5192	0	ALDH3A1->aldehyde_dehydrogenase_3_family_member_A1,chr17:19641297-19652256:-,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HCC15_LUNG	1	1	4.5192	FALSE	0	0	0	2	0	FALSE	ACH-000878
HCC15_LUNG	PXN--PLA2G1B	113	113	PXN	1155	chr12:120703420:-	PLA2G1B	24329	chr12:120763823:-	ONLY_REF_SPLICE	YES	106	0	0.68	1	1.2305	1.2305	{Klijn_CCL:Stomach=1,Lung=1},LOCAL_REARRANGEMENT:-:[56340],PXN->Oncogene{Bushman},chr12:120648250-120703574:-,paxillin,PLA2G1B->chr12:120759914-120765592:-,phospholipase_A2_group_IB	HCC15_LUNG	0.68	1	2.461	TRUE	0	2	0	2	2	TRUE	ACH-000878
HCC15_LUNG	RAB27A--CCPG1	87	86	RAB27A	14973	chr15:55516087:-	CCPG1	38945	chr15:55648607:-	ONLY_REF_SPLICE	YES	213	42	0.45	0.8	0.9474	0.9365	LOCAL_REARRANGEMENT:-:[20919],RAB27A->RAB27A,_member_RAS_oncogene_family,chr15:55495164-55611311:-,CCPG1->cell_cycle_progression_1,chr15:55632230-55700708:-	HCC15_LUNG	0.45	0.8	1.8839	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	TIMM23B--LINC00843	79	36	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8603	0.392	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC15_LUNG	1	1	1.2523	TRUE	508	994	45	981	0	FALSE	ACH-000878
HCC15_LUNG	FHOD3--ELP2	55	49	FHOD3	1287	chr18:33877963:+	ELP2	42006	chr18:33713201:+	ONLY_REF_SPLICE	YES	42	130	0.71	0.44	0.5989	0.5336	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,ELP2->chr18:33709407-33757909:+,elongator_acetyltransferase_complex_subunit_2	HCC15_LUNG	0.44	0.71	1.1325	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	MT-ND6--MT-TE	56	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	24	0	0.7	1	0.6098	0.0109	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC15_LUNG	0.7	1	0.6207	FALSE	499	1288	110	792	0	FALSE	ACH-000878
HCC15_LUNG	TIMM23--RP11-464F9.1	43	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	584	16	0.08	0.76	0.4683	0.0762	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC15_LUNG	0.08	0.76	0.5445	TRUE	519	3926	326	965	0	FALSE	ACH-000878
HCC15_LUNG	MT-TA--MT-TC	37	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4029	0.0762	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC15_LUNG	1	1	0.4791	FALSE	462	80	0	856	0	FALSE	ACH-000878
HCC15_LUNG	MT-ND6--MT-TE	38	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.4138	0.0109	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC15_LUNG	0.91	1	0.4247	FALSE	499	1288	110	792	0	FALSE	ACH-000878
HCC15_LUNG	DHX34--PTK2B	38	0	DHX34	1072	chr19:47852609:+	PTK2B	30532	chr8:27255065:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4138	0	DHX34->DEAH-box_helicase_34,chr19:47852538-47885961:+,PTK2B->chr8:27168999-27316903:+,protein_tyrosine_kinase_2_beta	HCC15_LUNG	1	1	0.4138	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	PRKCE--TTC7A	22	28	PRKCE	2104	chr2:45879587:+	TTC7A	56095	chr2:47233061:+	ONLY_REF_SPLICE	YES	10	119	0.83	0.3	0.2396	0.3049	PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,TTC7A->chr2:47143296-47303276:+,tetratricopeptide_repeat_domain_7A	HCC15_LUNG	0.3	0.83	0.5445	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	TMEM184B--DMC1	24	20	TMEM184B	7506	chr22:38626675:-	DMC1	28410	chr22:38934617:-	ONLY_REF_SPLICE	YES	115	30	0.28	0.59	0.2614	0.2178	TMEM184B->chr22:38615298-38669040:-,transmembrane_protein_184B,DMC1->DNA_meiotic_recombinase_1,chr22:38914954-38966291:-	HCC15_LUNG	0.28	0.59	0.4792	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	MT-ND6--MT-TE	28	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.3049	0.0109	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC15_LUNG	0.88	1	0.3158	FALSE	499	1288	110	792	0	FALSE	ACH-000878
HCC15_LUNG	SNRNP35--SETD8	25	1	SNRNP35	1576	chr12:123942763:+	SETD8	16456	chr12:123875177:+	ONLY_REF_SPLICE	YES	6	39	0.81	0.4	0.2722	0.0109	LOCAL_REARRANGEMENT:+:[48283],SNRNP35->chr12:123942188-123957701:+,small_nuclear_ribonucleoprotein_U11/U12_subunit_35,SETD8->chr12:123868320-123893905:+	HCC15_LUNG	0.4	0.81	0.2831	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	MT-TA--MT-TC	21	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2287	0.0109	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC15_LUNG	1	1	0.2396	FALSE	462	80	0	856	0	FALSE	ACH-000878
HCC15_LUNG	MT-ND6--MT-TE	20	1	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	25	0	0.46	1	0.2178	0.0109	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC15_LUNG	0.46	1	0.2287	FALSE	499	1288	110	792	0	FALSE	ACH-000878
HCC15_LUNG	CCNT2--AC098823.3	14	20	CCNT2	2657	chr2:135677461:+	AC098823.3	21235	chr2:231561410:-	ONLY_REF_SPLICE	YES	130	0	0.21	1	0.1525	0.2178	CCNT2->chr2:135675805-135716912:+,cyclin_T2,AC098823.3->chr2:231555636-231565244:-	HCC15_LUNG	0.21	1	0.3703	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	CHMP2B--MAGI1	11	13	CHMP2B	2754	chr3:87289940:+	MAGI1	24731	chr3:65479306:-	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.1198	0.1416	CHMP2B->charged_multivesicular_body_protein_2B,chr3:87276421-87304698:+,MAGI1->chr3:65339200-66024509:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_1	HCC15_LUNG	0.96	1	0.2614	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	IMMP2L--DOCK4	12	3	IMMP2L	1667	chr7:111201907:-	DOCK4	57580	chr7:111418425:-	ONLY_REF_SPLICE	YES	8	47	0.65	0.24	0.1307	0.0327	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	HCC15_LUNG	0.24	0.65	0.1634	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	MT-TA--MT-TC	11	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1198	0.0762	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC15_LUNG	1	1	0.196	FALSE	462	80	0	856	0	FALSE	ACH-000878
HCC15_LUNG	NRIP1--AF127936.7	10	5	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.68	1	0.1089	0.0544	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC15_LUNG	0.68	1	0.1633	FALSE	292	1546	117	613	0	FALSE	ACH-000878
HCC15_LUNG	MAGI1--CHMP2B	9	8	MAGI1	8512	chr3:65607647:-	CHMP2B	51167	chr3:87294864:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.098	0.0871	MAGI1->chr3:65339200-66024509:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_1,CHMP2B->charged_multivesicular_body_protein_2B,chr3:87276421-87304698:+	HCC15_LUNG	0.94	1	0.1851	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	OR51S1--TP53I11	11	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1198	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HCC15_LUNG	1	1	0.1198	TRUE	402	216	10	229	0	FALSE	ACH-000878
HCC15_LUNG	PLXDC1--TAF13	11	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1198	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCC15_LUNG	1	1	0.1198	TRUE	7	10	0	216	0	FALSE	ACH-000878
HCC15_LUNG	PRKCE--TTC7A	8	6	PRKCE	2104	chr2:45879587:+	TTC7A	57898	chr2:47238470:+	ONLY_REF_SPLICE	YES	10	143	0.58	0.09	0.0871	0.0653	PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,TTC7A->chr2:47143296-47303276:+,tetratricopeptide_repeat_domain_7A	HCC15_LUNG	0.09	0.58	0.1524	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	PRKCE--TTC7A	1	29	PRKCE	10365	chr2:45928630:+	TTC7A	56095	chr2:47233061:+	ONLY_REF_SPLICE	YES	11	119	0.73	0.2	0.0109	0.3158	PRKCE->chr2:45878484-46415129:+,protein_kinase_C_epsilon,TTC7A->chr2:47143296-47303276:+,tetratricopeptide_repeat_domain_7A	HCC15_LUNG	0.2	0.73	0.3267	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	RP11-96H19.1--RP11-446N19.1	7	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0762	0.0544	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC15_LUNG	1	1	0.1306	FALSE	515	4851	409	746	0	FALSE	ACH-000878
HCC15_LUNG	MT-ND6--MT-TE	7	1	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	26	0	0.24	1	0.0762	0.0109	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC15_LUNG	0.24	1	0.0871	FALSE	499	1288	110	792	0	FALSE	ACH-000878
HCC15_LUNG	ASXL2--GPR113	5	4	ASXL2	1351	chr2:26101035:-	GPR113	40263	chr2:26535990:-	ONLY_REF_SPLICE	YES	33	20	0.21	0.31	0.0544	0.0436	ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,GPR113->chr2:26531041-26569685:-	HCC15_LUNG	0.21	0.31	0.098	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	HSPBP1--GRK5	6	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0653	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HCC15_LUNG	1	1	0.0653	TRUE	1	39	0	134	39	FALSE	ACH-000878
HCC15_LUNG	RP11-275N1.1--NEBL	4	8	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	6	56	0.67	0.18	0.0436	0.0871	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	HCC15_LUNG	0.18	0.67	0.1307	TRUE	0	2	0	25	2	FALSE	ACH-000878
HCC15_LUNG	NRIP1--AF127936.7	4	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	43	0	0.19	1	0.0436	0.0653	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC15_LUNG	0.19	1	0.1089	FALSE	125	705	46	456	0	FALSE	ACH-000878
HCC15_LUNG	RP11-96H19.1--RP11-446N19.1	4	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0.0653	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC15_LUNG	1	1	0.1089	FALSE	467	2173	244	435	0	FALSE	ACH-000878
HCC15_LUNG	FOXN3--RP11-242P2.2	5	1	FOXN3	13459	chr14:89747294:-	RP11-242P2.2	36411	chr14:80078173:-	ONLY_REF_SPLICE	YES	26	0	0.19	1	0.0544	0.0109	FOXN3->chr14:89591215-90085493:-,forkhead_box_N3,RP11-242P2.2->chr14:80077761-80099654:-	HCC15_LUNG	0.19	1	0.0653	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	MT-ND6--MT-TE	5	1	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0544	0.0109	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC15_LUNG	0.6	1	0.0653	FALSE	499	1288	110	792	0	FALSE	ACH-000878
HCC15_LUNG	MT-TA--MT-TC	3	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.0871	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC15_LUNG	1	1	0.1198	FALSE	462	80	0	856	0	FALSE	ACH-000878
HCC15_LUNG	MTAP--CDKN2B-AS1	3	6	MTAP	8659	chr9:21838009:+	CDKN2B-AS1	36403	chr9:22077678:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0327	0.0653	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HCC15_LUNG	0.9	1	0.098	FALSE	0	1	0	1	0	FALSE	ACH-000878
HCC15_LUNG	NRIP1--AF127936.7	1	13	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	82	0	0.15	1	0.0109	0.1416	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC15_LUNG	0.15	1	0.1525	FALSE	164	806	69	479	0	FALSE	ACH-000878
HCC15_LUNG	ALDH3A1--MT-ND4	4	0	ALDH3A1	5114	chr17:19646601:-	MT-ND4	13628	chrM:10969:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	ALDH3A1->aldehyde_dehydrogenase_3_family_member_A1,chr17:19641297-19652256:-,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HCC15_LUNG	1	1	0.0436	FALSE	0	0	0	2	0	FALSE	ACH-000878
HCC15_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC15_LUNG	1	1	0.0436	FALSE	499	1288	110	792	0	FALSE	ACH-000878
HCC15_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC15_LUNG	1	1	0.0436	FALSE	499	1288	110	792	0	FALSE	ACH-000878
HCC15_LUNG	RP11-275N1.1--NEBL	4	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	HCC15_LUNG	1	1	0.0436	TRUE	0	0	0	21	0	FALSE	ACH-000878
HCC15_LUNG	IMMP2L--DOCK4	3	2	IMMP2L	1667	chr7:111201907:-	DOCK4	58674	chr7:111409733:-	ONLY_REF_SPLICE	YES	8	60	0.38	0.08	0.0327	0.0218	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	HCC15_LUNG	0.08	0.38	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	MT-ND6--MT-TE	3	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.0327	0.0218	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC15_LUNG	0.56	1	0.0545	FALSE	499	1288	110	792	0	FALSE	ACH-000878
HCC15_LUNG	MT-ND6--MT-TE	3	2	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0.0218	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC15_LUNG	1	1	0.0545	FALSE	499	1288	110	792	0	FALSE	ACH-000878
HCC15_LUNG	MT-ND6--MT-TE	3	1	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	26	0	0.13	1	0.0327	0.0109	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC15_LUNG	0.13	1	0.0436	FALSE	499	1288	110	792	0	FALSE	ACH-000878
HCC15_LUNG	SNRNP35--SETD8	3	1	SNRNP35	1576	chr12:123942763:+	SETD8	15259	chr12:123873980:+	ONLY_REF_SPLICE	YES	6	9	0.4	0.31	0.0327	0.0109	LOCAL_REARRANGEMENT:+:[48283],SNRNP35->chr12:123942188-123957701:+,small_nuclear_ribonucleoprotein_U11/U12_subunit_35,SETD8->chr12:123868320-123893905:+	HCC15_LUNG	0.31	0.4	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	ASXL2--GPR113	1	8	ASXL2	1351	chr2:26101035:-	GPR113	38762	chr2:26537491:-	ONLY_REF_SPLICE	YES	33	15	0.21	0.38	0.0109	0.0871	ASXL2->additional_sex_combs_like_2,_transcriptional_regulator,chr2:25956622-26101385:-,GPR113->chr2:26531041-26569685:-	HCC15_LUNG	0.21	0.38	0.098	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	CCNT2--AC098823.3	2	4	CCNT2	2657	chr2:135677461:+	AC098823.3	22628	chr2:231559961:-	ONLY_REF_SPLICE	YES	130	18	0.04	0.25	0.0218	0.0436	CCNT2->chr2:135675805-135716912:+,cyclin_T2,AC098823.3->chr2:231555636-231565244:-	HCC15_LUNG	0.04	0.25	0.0654	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	LEPROTL1--DDX42	3	0	LEPROTL1	4123	chr8:29962371:+	DDX42	25926	chr17:61882431:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	LEPROTL1->chr8:29952914-30034724:+,leptin_receptor_overlapping_transcript-like_1,DDX42->DEAD-box_helicase_42,chr17:61850963-61896677:+	HCC15_LUNG	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	TXN--UBB	3	0	TXN	2260	chr9:113013712:-	UBB	9283	chr17:16285216:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0327	0	TXN->Oncogene{Bushman},chr9:113006091-113018920:-,thioredoxin,UBB->chr17:16284112-16286059:+,ubiquitin_B	HCC15_LUNG	1	1	0.0327	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	USP34--XPO1	3	0	USP34	1120	chr2:61697785:-	XPO1	80582	chr2:61761038:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0327	0	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	HCC15_LUNG	1	1	0.0327	TRUE	0	2	0	4	2	TRUE	ACH-000878
HCC15_LUNG	CHMP2B--MAGI1	1	7	CHMP2B	1286	chr3:87276706:+	MAGI1	24731	chr3:65479306:-	ONLY_REF_SPLICE	NO	1	1	0.89	0.89	0.0109	0.0762	CHMP2B->charged_multivesicular_body_protein_2B,chr3:87276421-87304698:+,MAGI1->chr3:65339200-66024509:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_1	HCC15_LUNG	0.89	0.89	0.0871	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	IMMP2L--DOCK4	2	3	IMMP2L	1667	chr7:111201907:-	DOCK4	32527	chr7:111555959:-	ONLY_REF_SPLICE	YES	8	54	0.38	0.08	0.0218	0.0327	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	HCC15_LUNG	0.08	0.38	0.0545	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	MTAP--CDKN2B-AS1	1	5	MTAP	8659	chr9:21838009:+	CDKN2B-AS1	37616	chr9:22092307:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0109	0.0544	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	HCC15_LUNG	0.86	1	0.0653	FALSE	0	0	0	2	0	FALSE	ACH-000878
HCC15_LUNG	NUBP2--HN1L	2	1	NUBP2	1136	chr16:1833037:+	HN1L	14963	chr16:1741844:+	ONLY_REF_SPLICE	YES	17	633	0.15	0	0.0218	0.0109	LOCAL_REARRANGEMENT:+:[80621],NUBP2->chr16:1832902-1839192:+,nucleotide_binding_protein_2,HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like	HCC15_LUNG	0	0.15	0.0327	FALSE	0	0	0	1	0	FALSE	ACH-000878
HCC15_LUNG	ACACA--RHOT1	2	0	ACACA	1558	chr17:35766352:-	RHOT1	87423	chr17:30519220:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	ACACA->acetyl-CoA_carboxylase_alpha,chr17:35441923-35766909:-,RHOT1->chr17:30469473-30580393:+,ras_homolog_family_member_T1	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	BOP1--EIF4G3	2	0	BOP1	2339	chr8:145512776:-	EIF4G3	60624	chr1:21139732:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	BTBD3--TASP1	2	0	BTBD3	1232	chr20:11871602:+	TASP1	29681	chr20:13463984:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_v2:{count=1;pct=0.01%;dist=Minor_Salivary_Gland=1},BTBD3->BTB_domain_containing_3,chr20:11871371-11907257:+,TASP1->chr20:13246709-13619587:-,taspase_1	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	CDK5RAP1--NPEPPS	2	0	CDK5RAP1	1134	chr20:31989234:-	NPEPPS	49332	chr17:45697103:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	CDK5RAP1->CDK5_regulatory_subunit_associated_protein_1,chr20:31946645-31989367:-,NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	CRIM1--FEZ2	2	0	CRIM1	5875	chr2:36623930:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	HCC15_LUNG	1	1	0.0218	TRUE	0	1	0	2	0	TRUE	ACH-000878
HCC15_LUNG	CTC-260F20.3--ZFP30	2	0	CTC-260F20.3	1106	chr19:19627141:+	ZFP30	23587	chr19:38127206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	CTC-260F20.3->chr19:19627036-19646885:+,ZFP30->ZFP30_zinc_finger_protein,chr19:38104650-38183238:-	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	CTNNB1--ULK4	2	0	CTNNB1	3896	chr3:41241161:+	ULK4	46934	chr3:41877463:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_v2:{count=8;pct=0.09%;dist=Heart_-_Atrial_Appendage=2,Lung=1,Prostate=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Colon_-_Transverse=1},NEIGHBORS_OVERLAP:+:-:[13497],CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	HCC15_LUNG	1	1	0.0218	FALSE	0	1	0	3	0	FALSE	ACH-000878
HCC15_LUNG	DDX39B--SP1	2	0	DDX39B	1499	chr6:31509727:-	SP1	16574	chr12:53775443:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	DDX39B->DEAD-box_helicase_39B,chr6:31497996-31510225:-,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	46572	chr10:5810347:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	11	0	TRUE	ACH-000878
HCC15_LUNG	FAT1--CEP78	2	0	FAT1	6844	chr4:187627717:-	CEP78	46665	chr9:80856612:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	FAT1->ArcherDX_panel,FAT_atypical_cadherin_1,FoundationOne_panel,Oncogene{Bushman},chr4:187508937-187647876:-,CEP78->centrosomal_protein_78,chr9:80850978-80894606:+	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	HDLBP--PASK	2	0	HDLBP	2464	chr2:242254985:-	PASK	57319	chr2:242054828:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	NEIGHBORS[77000],HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein,PASK->PAS_domain_containing_serine/threonine_kinase,chr2:242045514-242089679:-	HCC15_LUNG	1	1	0.0218	FALSE	0	0	0	3	0	FALSE	ACH-000878
HCC15_LUNG	HERC4--REXO2	2	0	HERC4	3466	chr10:69832640:-	REXO2	49581	chr11:114316701:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	HERC4->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_4,chr10:69681665-69835105:-,REXO2->RNA_exonuclease_2,chr11:114310108-114321001:+	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	NQO2--IGF2BP3	2	0	NQO2	9651	chr6:3006793:+	IGF2BP3	42958	chr7:23353272:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+,IGF2BP3->chr7:23349828-23510086:-,insulin_like_growth_factor_2_mRNA_binding_protein_3	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	PBX1--GNAS	2	0	PBX1	4894	chr1:164532548:+	GNAS	66713	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	PSMA3--ACTR10	2	0	PSMA3	2731	chr14:58714550:+	ACTR10	27735	chr14:58697117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[9799],PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3,ACTR10->actin-related_protein_10_homolog,chr14:58666798-58701750:+	HCC15_LUNG	1	1	0.0218	TRUE	0	1	0	2	1	TRUE	ACH-000878
HCC15_LUNG	RNF207--PABPC1	2	0	RNF207	8709	chr1:6273243:+	PABPC1	18532	chr8:101730116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	RNF207->chr1:6265535-6281359:+,ring_finger_protein_207,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	ROR1--YPEL5	2	0	ROR1	5491	chr1:64516388:+	YPEL5	23739	chr2:30379494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	ROR1->chr1:64239693-64647181:+,receptor_tyrosine_kinase-like_orphan_receptor_1,YPEL5->chr2:30369807-30383399:+,yippee_like_5	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	RP11-108K3.1--GLDN	1	4	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0109	0.0436	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	HCC15_LUNG	1	1	0.0545	FALSE	1	20	0	46	0	FALSE	ACH-000878
HCC15_LUNG	RPL4--UBFD1	2	0	RPL4	5255	chr15:66795696:-	UBFD1	19461	chr16:23575360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	RPL4->chr15:66790355-66816870:-,ribosomal_protein_L4,UBFD1->chr16:23568392-23585710:+,ubiquitin_family_domain_containing_1	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	SMAD3--GLE1	2	0	SMAD3	2698	chr15:67358698:+	GLE1	28588	chr9:131271155:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	SMAD3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_3,chr15:67356101-67487533:+,GLE1->GLE1,_RNA_export_mediator,chr9:131266979-131304567:+	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	STAG2--EIF4EBP2	2	0	STAG2	1655	chrX:123094716:+	EIF4EBP2	47569	chr10:72179670:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	STAG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:123094062-123556514:+,stromal_antigen_2,EIF4EBP2->chr10:72164135-72188374:+,eukaryotic_translation_initiation_factor_4E_binding_protein_2	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	TMSB10--CDC14B	2	0	TMSB10	1094	chr2:85132842:+	CDC14B	8900	chr9:99327765:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,CDC14B->cell_division_cycle_14B,chr9:99252523-99382112:-	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	TRAPPC11--VIM	2	0	TRAPPC11	16959	chr4:184614300:+	VIM	32623	chr10:17272649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	TRAPPC11->chr4:184580420-184634745:+,trafficking_protein_particle_complex_11,VIM->chr10:17270258-17279592:+,vimentin	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	VPS29--GAPVD1	2	0	VPS29	1069	chr12:110939854:-	GAPVD1	24998	chr9:128074731:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	VPS29->VPS29_retromer_complex_component,chr12:110928902-110939922:-,GAPVD1->GTPase_activating_protein_and_VPS9_domains_1,chr9:128024073-128129486:+	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	ZC3H14--CCT6A	2	0	ZC3H14	10094	chr14:89044484:+	CCT6A	29414	chr7:56123317:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	ZC3H18--CPSF7	2	0	ZC3H18	20370	chr16:88697747:+	CPSF7	24739	chr11:61196762:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0218	0	ZC3H18->chr16:88636789-88698374:+,zinc_finger_CCCH-type_containing_18,CPSF7->chr11:61170121-61197503:-,cleavage_and_polyadenylation_specific_factor_7	HCC15_LUNG	1	1	0.0218	TRUE	0	0	0	1	0	TRUE	ACH-000878
HCC15_LUNG	VTI1A--RP11-57H14.3	1	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	117	0	0.03	1	0.0109	0.0218	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HCC15_LUNG	0.03	1	0.0327	FALSE	272	151	14	158	0	FALSE	ACH-000878
HCC15_LUNG	CPSF6--NR0B1	1	1	CPSF6	11046	chr12:69656342:+	NR0B1	23329	chrX:30322940:-	ONLY_REF_SPLICE	YES	267	243	0.01	0.01	0.0109	0.0109	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,NR0B1->chrX:30322323-30327715:-,nuclear_receptor_subfamily_0_group_B_member_1	HCC15_LUNG	0.01	0.01	0.0218	FALSE	0	1	0	8	0	FALSE	ACH-000878
HCC15_LUNG	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	223	1	0.01	0.0109	0.0109	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HCC15_LUNG	0.01	1	0.0218	FALSE	347	1186	183	220	0	FALSE	ACH-000878
HCC15_LUNG	FARS2--RP3-380B8.4	1	1	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	YES	49	0	0.04	1	0.0109	0.0109	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	HCC15_LUNG	0.04	1	0.0218	FALSE	27	82	4	18	0	FALSE	ACH-000878
HCC15_LUNG	KPNB1--EFTUD2	1	1	KPNB1	6438	chr17:45736026:+	EFTUD2	43680	chr17:42953468:-	ONLY_REF_SPLICE	YES	925	391	0	0.01	0.0109	0.0109	KPNB1->chr17:45726842-45762871:+,karyopherin_subunit_beta_1,EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2	HCC15_LUNG	0	0.01	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000878
HCC15_LUNG	PIGU--DYNLRB1	1	1	PIGU	1151	chr20:33264760:-	DYNLRB1	21224	chr20:33114073:+	ONLY_REF_SPLICE	YES	130	4	0.02	0.33	0.0109	0.0109	LOCAL_INVERSION:-:+:[19584],PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,DYNLRB1->chr20:33104214-33128762:+,dynein_light_chain_roadblock-type_1	HCC15_LUNG	0.02	0.33	0.0218	TRUE	0	0	0	1	0	FALSE	ACH-000878
HCC15_LUNG	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	17	1	0.11	0.0109	0.0109	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC15_LUNG	0.11	1	0.0218	TRUE	458	1351	185	561	0	FALSE	ACH-000878
HCC15_LUNG	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	48	1	0.04	0.0109	0.0109	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC15_LUNG	0.04	1	0.0218	TRUE	465	1949	224	605	0	FALSE	ACH-000878
HCC15_LUNG	SUMF2--NUPL2	1	1	SUMF2	3658	chr7:56140804:+	NUPL2	22244	chr7:23239077:+	ONLY_REF_SPLICE	YES	962	93	0	0.02	0.0109	0.0109	SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2,NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2	HCC15_LUNG	0	0.02	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000878
HCC15_LUNG	TMEM123--APLP2	1	1	TMEM123	5695	chr11:102319543:-	APLP2	26175	chr11:129996595:+	ONLY_REF_SPLICE	YES	720	3156	0	0	0.0109	0.0109	TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	HCC15_LUNG	0	0	0.0218	FALSE	0	0	0	1	0	FALSE	ACH-000878
HCC15_LUNG	TSPAN4--POLR2L	1	1	TSPAN4	6469	chr11:850367:+	POLR2L	16422	chr11:840480:-	ONLY_REF_SPLICE	YES	2123	1289	0	0	0.0109	0.0109	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[263],TSPAN4->chr11:842808-867116:+,tetraspanin_4,POLR2L->chr11:837356-842545:-,polymerase_(RNA)_II_subunit_L	HCC15_LUNG	0	0	0.0218	FALSE	1	0	0	1	0	FALSE	ACH-000878
HCC15_LUNG	ZNF227--IFT74	1	1	ZNF227	3044	chr19:44717397:+	IFT74	33984	chr9:27044740:+	ONLY_REF_SPLICE	NO	127	61	0.02	0.03	0.0109	0.0109	ZNF227->chr19:44711700-44741421:+,zinc_finger_protein_227,IFT74->chr9:26947037-27062928:+,intraflagellar_transport_74	HCC15_LUNG	0.02	0.03	0.0218	TRUE	0	0	0	1	0	FALSE	ACH-000878
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPAG9--P4HB	229	94	SPAG9	2633	chr17:49156945:-	P4HB	47818	chr17:79817263:-	ONLY_REF_SPLICE	YES	293	3253	0.52	0.09	2.2418	0.9202	SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,P4HB->chr17:79801035-79818570:-,prolyl_4-hydroxylase_subunit_beta	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.52	3.162	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00152--AC093616.4	76	51	LINC00152	14196	chr2:87906288:+	AC093616.4	17233	chr2:88000503:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.744	0.4993	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2433	FALSE	0	0	0	14	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	80	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7832	0.3035	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0867	TRUE	508	994	45	981	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	51	61	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	20	1	0.85	0.99	0.4993	0.5972	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.99	1.0965	TRUE	0	48	0	65	48	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP54--ANXA7	64	0	USP54	1017	chr10:75385695:-	ANXA7	41932	chr10:75160615:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6265	0	NEIGHBORS[83462],USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54,ANXA7->annexin_A7,chr10:75134859-75173834:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6265	FALSE	0	1	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	49	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	362	3	0.13	0.95	0.4797	0.0294	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.95	0.5091	TRUE	519	3926	326	965	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCP11L1--QSER1	40	17	TCP11L1	13636	chr11:33094199:+	QSER1	30266	chr11:32975403:+	ONLY_REF_SPLICE	YES	48	70	0.54	0.45	0.3916	0.1664	LOCAL_REARRANGEMENT:+:[46101],TCP11L1->chr11:33060963-33127489:+,t-complex_11_like_1,QSER1->chr11:32914724-33014862:+,glutamine_and_serine_rich_1	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	0.54	0.558	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COLGALT1--TMEM147	42	1	COLGALT1	13872	chr19:17691714:+	TMEM147	19423	chr19:36036790:+	ONLY_REF_SPLICE	YES	1424	913	0.03	0.04	0.4112	0.0098	COLGALT1->chr19:17666403-17693971:+,collagen_beta(1-O)galactosyltransferase_1,TMEM147->chr19:36036497-36038428:+,transmembrane_protein_147	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.421	TRUE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	38	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.372	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.372	TRUE	0	0	0	518	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC073072.5--STEAP1B	33	0	AC073072.5	1053	chr7:22767187:-	STEAP1B	6230	chr7:22672541:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3231	0	NEIGHBORS[92470],AC073072.5->chr7:22765014-22767239:-,STEAP1B->STEAP_family_member_1B,chr7:22459063-22672544:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3231	FALSE	0	0	0	5	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	25	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2447	0.0685	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3132	FALSE	462	80	0	856	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR70--NUP155	21	18	WDR70	2427	chr5:37381787:+	NUP155	37889	chr5:37338020:-	ONLY_REF_SPLICE	YES	228	137	0.15	0.22	0.2056	0.1762	LOCAL_INVERSION:+:-:[8031],WDR70->WD_repeat_domain_70,chr5:37379314-37753537:+,NUP155->chr5:37288239-37371283:-,nucleoporin_155kDa	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.22	0.3818	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLXDC1--TAF13	24	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.235	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.235	TRUE	7	10	0	216	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	7	64	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	20	0	0.78	1	0.0685	0.6265	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.695	TRUE	0	35	0	55	35	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	21	5	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	143	1	0.15	0.2056	0.0489	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.2545	TRUE	347	1186	183	220	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM38B--UNC13B	18	13	TMEM38B	8365	chr9:108510471:+	UNC13B	28908	chr9:35366944:+	ONLY_REF_SPLICE	YES	101	50	0.23	0.38	0.1762	0.1273	TMEM38B->chr9:108456825-108538893:+,transmembrane_protein_38B,UNC13B->chr9:35161999-35405335:+,unc-13_homolog_B_(C._elegans)	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.38	0.3035	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOK1--ALMS1P	16	4	DOK1	1147	chr2:74776299:+	ALMS1P	14972	chr2:73912088:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1566	0.0392	DOK1->chr2:74776153-74784681:+,docking_protein_1,ALMS1P->chr2:73872046-73912703:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1958	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	14	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	49	1	0.28	0.1371	0.0489	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	1	0.186	TRUE	465	1949	224	605	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ENTPD1-AS1--ZNF518A	12	8	ENTPD1-AS1	1973	chr10:97849023:-	ZNF518A	39069	chr10:97915681:+	ONLY_REF_SPLICE	YES	2	6	0.91	0.77	0.1175	0.0783	LOCAL_INVERSION:-:+:[39477],ENTPD1-AS1->ENTPD1_antisense_RNA_1,chr10:97512963-97849995:-,ZNF518A->chr10:97889472-97965044:+,zinc_finger_protein_518A	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.91	0.1958	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VIM-AS1--HNRNPA1	13	4	VIM-AS1	1641	chr10:17271344:-	HNRNPA1	12402	chr12:54676584:+	ONLY_REF_SPLICE	YES	1	5625	0.94	0	0.1273	0.0392	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,HNRNPA1->chr12:54673977-54680872:+,heterogeneous_nuclear_ribonucleoprotein_A1	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.94	0.1665	TRUE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	11	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	23	1	0.48	0.1077	0.0979	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	0.2056	TRUE	458	1351	185	561	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1077	0.0392	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1469	FALSE	499	1288	110	792	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ECE1--EIF4G3	9	11	ECE1	13447	chr1:21582440:-	EIF4G3	41598	chr1:21329301:-	ONLY_REF_SPLICE	YES	214	99	0.09	0.17	0.0881	0.1077	NEIGHBORS[40363],ECE1->chr1:21543740-21671997:-,endothelin_converting_enzyme_1,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.17	0.1958	FALSE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANPEP--MT-ND4L	8	14	ANPEP	16060	chr15:90328379:-	MT-ND4L	19321	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1828	0	0.01	1	0.0783	0.1371	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.2154	FALSE	0	1	0	16	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	9	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	0	0.75	1	0.0881	0.0587	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.1468	FALSE	515	4851	409	746	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	9	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0881	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0881	FALSE	230	193	14	283	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPSAP52--HMGA2	8	4	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	25	1169	0.32	0.01	0.0783	0.0392	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.32	0.1175	FALSE	0	59	0	125	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCP11L1--QSER1	4	18	TCP11L1	15656	chr11:33102770:+	QSER1	30266	chr11:32975403:+	ONLY_REF_SPLICE	YES	1	70	0.96	0.24	0.0392	0.1762	LOCAL_REARRANGEMENT:+:[46101],TCP11L1->chr11:33060963-33127489:+,t-complex_11_like_1,QSER1->chr11:32914724-33014862:+,glutamine_and_serine_rich_1	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.96	0.2154	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	8	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0783	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0783	TRUE	0	16	0	53	13	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--SEC22B	6	6	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	108	1077	0.1	0.01	0.0587	0.0587	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.1	0.1174	TRUE	49	42	7	43	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00152--AC093616.4	1	25	LINC00152	11136	chr2:87882865:+	AC093616.4	17233	chr2:88000503:+	ONLY_REF_SPLICE	YES	221	0	0.11	1	0.0098	0.2447	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.2545	FALSE	0	0	0	2	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--B2M	7	1	RPS6	2435	chr9:19378818:-	B2M	8049	chr15:45003711:+	INCL_NON_REF_SPLICE	YES	6272	0	0	1	0.0685	0.0098	GTEx&tcga_normals:4/3694=0.11%,RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0783	FALSE	0	0	0	28	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--MT-RNR2	5	6	MT-CO1	1653	chrM:6556:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	27316	0	0	1	0.0489	0.0587	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1076	FALSE	44	51	6	21	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	6	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0587	TRUE	0	0	0	100	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1051	chrM:14623:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0587	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0587	FALSE	499	1288	110	792	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ENTPD1-AS1--ZNF518A	5	3	ENTPD1-AS1	1973	chr10:97849023:-	ZNF518A	48252	chr10:97963676:+	ONLY_REF_SPLICE	YES	2	3	0.8	0.73	0.0489	0.0294	LOCAL_INVERSION:-:+:[39477],ENTPD1-AS1->ENTPD1_antisense_RNA_1,chr10:97512963-97849995:-,ZNF518A->chr10:97889472-97965044:+,zinc_finger_protein_518A	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.8	0.0783	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0392	0.0685	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1077	FALSE	462	80	0	856	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00152--AC093616.4	1	18	LINC00152	1278	chr2:87755164:+	AC093616.4	17233	chr2:88000503:+	ONLY_REF_SPLICE	YES	1117	0	0.02	1	0.0098	0.1762	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.186	FALSE	0	0	0	11	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ECE1--EIF4G3	2	13	ECE1	14590	chr1:21573714:-	EIF4G3	41598	chr1:21329301:-	ONLY_REF_SPLICE	YES	150	99	0.09	0.13	0.0196	0.1273	NEIGHBORS[40363],ECE1->chr1:21543740-21671997:-,endothelin_converting_enzyme_1,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.13	0.1469	FALSE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ECE1--EIF4G3	3	8	ECE1	13447	chr1:21582440:-	EIF4G3	45899	chr1:21307720:-	ONLY_REF_SPLICE	YES	214	127	0.05	0.08	0.0294	0.0783	NEIGHBORS[40363],ECE1->chr1:21543740-21671997:-,endothelin_converting_enzyme_1,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.08	0.1077	FALSE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--MT2A	3	8	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	4135	3	0	0.79	0.0294	0.0783	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.79	0.1077	TRUE	1	0	0	19	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JUN--MT2A	5	0	JUN	2308	chr1:59248478:-	MT2A	7705	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	JUN->ArcherDX_panel,FoundationOne_panel,Jun_proto-oncogene,_AP-1_transcription_factor_subunit,Oncogene{Bushman},chr1:59246465-59249785:-,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0489	TRUE	0	0	0	6	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00152--AC093616.4	3	8	LINC00152	14196	chr2:87906288:+	AC093616.4	20662	chr2:88007281:+	INCL_NON_REF_SPLICE	YES	0	35	1	0.24	0.0294	0.0783	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.1077	FALSE	0	0	0	4	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	5	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0489	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0489	FALSE	231	205	14	283	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0489	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0489	FALSE	292	1546	117	613	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--MT2A	3	7	EEF2	9846	chr19:3976466:-	MT2A	13683	chr16:56642535:+	INCL_NON_REF_SPLICE	YES	3539	4	0	0.71	0.0294	0.0685	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.71	0.0979	FALSE	1	0	0	19	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	3	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13163	57	0	0.11	0.0392	0.0294	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.11	0.0686	FALSE	231	217	16	283	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	4	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.29	1	0.0392	0.0294	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.0686	FALSE	164	806	69	479	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0294	0.0685	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.0979	FALSE	467	2173	244	435	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14271	57	0	0.1	0.0392	0.0196	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.1	0.0588	FALSE	231	217	16	283	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0392	0.0196	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0588	FALSE	499	1288	110	792	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0294	0.0587	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0881	FALSE	462	80	0	856	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	5	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0294	0.0489	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0783	FALSE	499	1288	110	792	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP54--ANXA7	4	1	USP54	5793	chr10:75371289:-	ANXA7	41932	chr10:75160615:-	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.0392	0.0098	NEIGHBORS[83462],USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54,ANXA7->annexin_A7,chr10:75134859-75173834:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.049	FALSE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	4	0	AC104389.28	1093	chr11:5526790:-	HBE1	13750	chr11:5291386:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0392	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0392	TRUE	0	16	0	53	13	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	4	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0392	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0392	FALSE	351	233	23	137	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1245	chrM:11004:+	MT-ATP8	5477	chrM:8464:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0392	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0392	FALSE	231	204	14	283	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--SEC22B	2	8	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	103	1077	0.09	0.01	0.0196	0.0783	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.09	0.0979	FALSE	49	42	7	43	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STK3--RP11-410L14.2	4	0	STK3	14445	chr8:99761504:-	RP11-410L14.2	40104	chr8:100009194:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	LOCAL_REARRANGEMENT:-:[53936],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,RP11-410L14.2->chr8:100008991-100025272:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRR16--CTD-2334D19.1	3	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	105	0	0.05	1	0.0294	0.0294	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0588	FALSE	56	216	12	147	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-353N4.6--SEC22B	1	11	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	103	1008	0.1	0.01	0.0098	0.1077	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.1	0.1175	TRUE	33	36	9	21	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.64	1	0.0196	0.0685	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.0881	FALSE	407	2205	196	549	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	2	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	NO	15375	0	0	1	0.0294	0.0196	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.049	FALSE	231	217	16	283	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCKAP5--TMEM163	3	2	NCKAP5	5640	chr2:134060609:-	TMEM163	36643	chr2:135309662:-	ONLY_REF_SPLICE	YES	8	0	0.38	1	0.0294	0.0196	NCKAP5->NCK_associated_protein_5,chr2:133429374-134326034:-,TMEM163->chr2:135213330-135476570:-,transmembrane_protein_163	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.049	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NF1--TET1	3	2	NF1	39979	chr17:29592357:+	TET1	78702	chr10:70331974:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0.0196	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,TET1->Oncogene{Bushman},chr10:70320413-70454239:+,tet_methylcytosine_dioxygenase_1	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.049	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	91	0.45	0.05	0.0294	0.0196	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.45	0.049	FALSE	16	356	14	466	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO1--SUMO2	3	0	MT-CO1	1592	chrM:6495:+	SUMO2	5567	chr17:73179054:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0294	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0294	FALSE	0	0	0	12	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0294	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0294	FALSE	230	198	14	283	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0294	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0294	FALSE	231	217	16	283	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOR2--UBC	3	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0294	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0294	TRUE	145	312	16	51	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NEO1--ADPGK	2	1	NEO1	9310	chr15:73470768:+	ADPGK	39484	chr15:73078187:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0196	0.0098	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},NEO1->chr15:73344051-73597547:+,neogenin_1,ADPGK->ADP-dependent_glucokinase,chr15:73043710-73078187:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1L12.3--SLC5A12	2	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	NO	4	0	0.43	1	0.0196	0.0098	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.0294	TRUE	3	101	0	60	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP79--TRIM28	2	1	RPL23AP79	7666	chr19:59097723:+	TRIM28	18106	chr19:59058743:+	ONLY_REF_SPLICE	YES	26	751	0.1	0	0.0196	0.0098	LOCAL_REARRANGEMENT:+:[22781],RPL23AP79->chr19:59084870-59111168:+,ribosomal_protein_L23a_pseudogene_79,TRIM28->chr19:59055458-59062089:+,tripartite_motif_containing_28	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.1	0.0294	FALSE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC073072.5--STEAP1B	2	0	AC073072.5	1053	chr7:22767187:-	STEAP1B	9322	chr7:22534505:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	NEIGHBORS[92470],AC073072.5->chr7:22765014-22767239:-,STEAP1B->STEAP_family_member_1B,chr7:22459063-22672544:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	FALSE	1	7	0	3	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRI3BP--UBC	2	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	TRUE	5	99	5	34	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM2--TTC7A	2	0	CALM2	1161	chr2:47403580:-	TTC7A	28805	chr2:47233061:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	GTEx_v2:{count=2;pct=0.02%;dist=Heart_-_Atrial_Appendage=1,Colon_-_Transverse=1},LOCAL_INVERSION:-:+:[83945],CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,TTC7A->chr2:47143296-47303276:+,tetratricopeptide_repeat_domain_7A	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	TRUE	0	0	0	2	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COA1--STK17A	2	0	COA1	1289	chr7:43769028:-	STK17A	27976	chr7:43635500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	NEIGHBORS_OVERLAP:-:+:[18330],COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,STK17A->chr7:43622357-43666385:+,serine/threonine_kinase_17a	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	FALSE	0	3	1	13	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	2	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	FALSE	0	24	0	62	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30007	chr8:144669019:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	TRUE	1	10	0	18	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP6-99M1.2--EIF4A2	2	0	RP6-99M1.2	1489	chrX:45629189:-	EIF4A2	12891	chr3:186506099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	RP6-99M1.2->chrX:45604639-45629677:-,EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THSD4--ATP1B3	2	0	THSD4	7149	chr15:71549054:+	ATP1B3	48009	chr3:141644373:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	THSD4->chr15:71389291-72075722:+,thrombospondin_type_1_domain_containing_4,ATP1B3->ATPase_Na+/K+_transporting_subunit_beta_3,chr3:141594966-141645356:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	U2AF1--PKNOX1	2	0	U2AF1	1137	chr21:44527561:-	PKNOX1	18796	chr21:44424436:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},LOCAL_INVERSION:-:+:[59375],U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-,PKNOX1->Oncogene{Bushman},PBX/knotted_1_homeobox_1,chr21:44394620-44453691:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	TRUE	0	1	0	3	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP54--ANXA7	2	0	USP54	2491	chr10:75384197:-	ANXA7	41932	chr10:75160615:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	NEIGHBORS[83462],USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54,ANXA7->annexin_A7,chr10:75134859-75173834:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP54--ANXA7	2	0	USP54	1017	chr10:75385695:-	ANXA7	42987	chr10:75158143:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	NEIGHBORS[83462],USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54,ANXA7->annexin_A7,chr10:75134859-75173834:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VMP1--CLTC	2	0	VMP1	1557	chr17:57785109:+	CLTC	24482	chr17:57721637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0196	0	{Klijn_CCL:Lung=1,Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[10882],VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1,CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0196	TRUE	0	0	0	3	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CRIM1--FEZ2	1	3	CRIM1	21418	chr2:36764689:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	436	1285	0.01	0	0.0098	0.0294	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0392	FALSE	1	4	0	11	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C7orf60--AC018464.3	1	2	C7orf60	5088	chr7:112535624:-	AC018464.3	18799	chr7:112613727:-	ONLY_REF_SPLICE	YES	65	12	0.04	0.2	0.0098	0.0196	LOCAL_REARRANGEMENT:-:[14730],C7orf60->chr7:112459202-112579971:-,AC018464.3->chr7:112594701-112635689:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.2	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C7orf60--AC018464.3	1	2	C7orf60	5088	chr7:112535624:-	AC018464.3	19867	chr7:112596757:-	ONLY_REF_SPLICE	YES	65	13	0.04	0.19	0.0098	0.0196	LOCAL_REARRANGEMENT:-:[14730],C7orf60->chr7:112459202-112579971:-,AC018464.3->chr7:112594701-112635689:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.19	0.0294	TRUE	0	0	0	1	0	TRUE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP54--ANXA7	1	2	USP54	6893	chr10:75366127:-	ANXA7	41932	chr10:75160615:-	ONLY_REF_SPLICE	YES	0	2	1	0.6	0.0098	0.0196	NEIGHBORS[83462],USP54->chr10:75257296-75385711:-,ubiquitin_specific_peptidase_54,ANXA7->annexin_A7,chr10:75134859-75173834:-	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.0294	FALSE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC004967.7--CAPN2	1	1	AC004967.7	1120	chr7:97601447:-	CAPN2	21679	chr1:223946972:+	ONLY_REF_SPLICE	YES	66	2229	0.03	0	0.0098	0.0098	AC004967.7->chr7:97598317-97601566:-,CAPN2->calpain_2,chr1:223889295-223963720:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANO7--HDLBP	1	1	ANO7	20467	chr2:242157796:+	HDLBP	33898	chr2:242207956:-	ONLY_REF_SPLICE	YES	16	689	0.11	0	0.0098	0.0098	GTEx_FI:{Brain=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[1887],ANO7->anoctamin_7,chr2:242127924-242164792:+,HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.11	0.0196	FALSE	2	1	0	3	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHCHD3--BPGM	1	1	CHCHD3	7933	chr7:132659929:-	BPGM	26180	chr7:134363605:+	ONLY_REF_SPLICE	YES	568	1369	0	0	0.0098	0.0098	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,BPGM->bisphosphoglycerate_mutase,chr7:134331560-134364565:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHCHD3--EXOC4	1	1	CHCHD3	10629	chr7:132570422:-	EXOC4	23855	chr7:132973676:+	ONLY_REF_SPLICE	YES	613	220	0	0.01	0.0098	0.0098	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0196	FALSE	0	0	0	2	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERP44--TEX10	1	1	ERP44	1257	chr9:102861066:-	TEX10	21306	chr9:103111654:-	ONLY_REF_SPLICE	YES	506	262	0	0.01	0.0098	0.0098	ERP44->chr9:102741461-102861322:-,endoplasmic_reticulum_protein_44,TEX10->chr9:103064359-103115221:-,testis_expressed_10	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NAA20--CRYZL1	1	1	NAA20	3427	chr20:20003124:+	CRYZL1	31150	chr21:34963517:-	ONLY_REF_SPLICE	NO	859	140	0	0.01	0.0098	0.0098	NAA20->N(alpha)-acetyltransferase_20,_NatB_catalytic_subunit,chr20:19997760-20014299:+,CRYZL1->chr21:34961647-35016232:-,crystallin_zeta_like_1	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPC1--OSBPL1A	1	1	NPC1	11958	chr18:21134722:-	OSBPL1A	48373	chr18:21898773:-	ONLY_REF_SPLICE	YES	85	69	0.02	0.03	0.0098	0.0098	NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-,OSBPL1A->chr18:21742008-21977844:-,oxysterol_binding_protein_like_1A	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0196	TRUE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR3K--ABCA17P	1	1	POLR3K	1153	chr16:103476:-	ABCA17P	13390	chr16:2411117:+	ONLY_REF_SPLICE	YES	274	5	0.01	0.29	0.0098	0.0098	POLR3K->chr16:96407-103628:-,polymerase_(RNA)_III_subunit_K,ABCA17P->ATP_binding_cassette_subfamily_A_member_17,_pseudogene,chr16:2389151-2476700:+	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.29	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRPS1--EZR	1	1	TRPS1	4117	chr8:116680772:-	EZR	29914	chr6:159210403:-	ONLY_REF_SPLICE	NO	54	1094	0.04	0	0.0098	0.0098	TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1,EZR->chr6:159186773-159240444:-,ezrin	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP3--ZNF609	1	1	USP3	1237	chr15:63797029:+	ZNF609	36813	chr15:64915026:+	ONLY_REF_SPLICE	NO	237	42	0.01	0.05	0.0098	0.0098	USP3->Oncogene{Bushman},chr15:63796793-63886839:+,ubiquitin_specific_peptidase_3,ZNF609->chr15:64752941-64978264:+,zinc_finger_protein_609	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000190
HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XRN2--SNX5	1	1	XRN2	1170	chr20:21284111:+	SNX5	32571	chr20:17937681:-	ONLY_REF_SPLICE	YES	425	1333	0	0	0.0098	0.0098	XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	HDMYZ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000190
SALE_LUNG	KANSL1--ARL17B	119	87	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	29	44	0.88	0.82	1.6271	1.1896	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SALE_LUNG	0.82	0.88	2.8167	TRUE	181	1564	124	196	0	FALSE	ACH-000064
SALE_LUNG	TIMM23B--LINC00843	81	36	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1075	0.4922	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SALE_LUNG	1	1	1.5997	TRUE	508	994	45	981	0	FALSE	ACH-000064
SALE_LUNG	TIMM23--RP11-464F9.1	55	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	159	11	0.26	0.84	0.752	0.0137	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SALE_LUNG	0.26	0.84	0.7657	TRUE	519	3926	326	965	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-ND1	27	1	MT-ND4	1213	chrM:10972:+	MT-ND1	5394	chrM:3322:+	INCL_NON_REF_SPLICE	YES	16265	0	0	1	0.3692	0.0137	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SALE_LUNG	0	1	0.3829	FALSE	51	50	3	16	0	FALSE	ACH-000064
SALE_LUNG	MT-TA--MT-TC	23	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3145	0.041	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SALE_LUNG	1	1	0.3555	FALSE	462	80	0	856	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-ATP8	21	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2871	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	1	1	0.2871	FALSE	230	193	14	283	0	FALSE	ACH-000064
SALE_LUNG	PLXDC1--TAF13	18	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2461	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SALE_LUNG	1	1	0.2461	TRUE	7	10	0	216	0	FALSE	ACH-000064
SALE_LUNG	MT-ND5--MT-ATP8	16	4	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6303	60	0	0.25	0.2188	0.0547	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	0	0.25	0.2735	FALSE	43	37	8	105	0	FALSE	ACH-000064
SALE_LUNG	MT-ND6--MT-TE	14	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1914	0.0957	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SALE_LUNG	0.95	1	0.2871	FALSE	499	1288	110	792	0	FALSE	ACH-000064
SALE_LUNG	MT-ND5--MT-ATP8	12	14	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1641	0.1914	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	0.96	1	0.3555	FALSE	43	37	8	105	0	FALSE	ACH-000064
SALE_LUNG	MT-ND5--MT-ATP8	14	5	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4166	4	0	0.83	0.1914	0.0684	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	0	0.83	0.2598	FALSE	43	37	8	105	0	FALSE	ACH-000064
SALE_LUNG	MT-ND2--MT-RNR2	14	1	MT-ND2	1899	chrM:5368:+	MT-RNR2	5071	chrM:1699:+	INCL_NON_REF_SPLICE	YES	3390	0	0	1	0.1914	0.0137	LOCAL_REARRANGEMENT:+:[1241],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SALE_LUNG	0	1	0.2051	FALSE	19	92	8	6	0	FALSE	ACH-000064
SALE_LUNG	MT-ATP6--MT-CO1	12	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	11836	28310	0	0	0.1641	0.0137	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SALE_LUNG	0	0	0.1778	FALSE	183	104	9	328	0	FALSE	ACH-000064
SALE_LUNG	KANSL1--ARL17B	1	37	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	29	39	0.57	0.49	0.0137	0.5059	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SALE_LUNG	0.49	0.57	0.5196	TRUE	20	16	0	28	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-ATP8	10	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1367	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	1	1	0.1367	FALSE	230	198	14	283	0	FALSE	ACH-000064
SALE_LUNG	SLC7A5--MT-ND1	9	3	SLC7A5	13719	chr16:87864490:-	MT-ND1	17596	chrM:3322:+	INCL_NON_REF_SPLICE	YES	7292	0	0	1	0.1231	0.041	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SALE_LUNG	0	1	0.1641	FALSE	0	0	0	11	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-ND1	9	2	MT-ND4	2043	chrM:11802:+	MT-ND1	5745	chrM:3673:+	INCL_NON_REF_SPLICE	NO	16558	12570	0	0	0.1231	0.0273	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SALE_LUNG	0	0	0.1504	FALSE	51	52	3	16	0	FALSE	ACH-000064
SALE_LUNG	RP4-565E6.1--HYDIN	7	5	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0957	0.0684	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SALE_LUNG	1	1	0.1641	TRUE	456	1387	91	133	0	FALSE	ACH-000064
SALE_LUNG	MT-CO2--MT-ND2	8	0	MT-CO2	1276	chrM:7861:+	MT-ND2	5365	chrM:5150:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1094	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SALE_LUNG	1	1	0.1094	FALSE	105	46	5	21	0	FALSE	ACH-000064
SALE_LUNG	MT-ND6--MT-TE	7	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0957	0.0137	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SALE_LUNG	0.89	1	0.1094	FALSE	499	1288	110	792	0	FALSE	ACH-000064
SALE_LUNG	MT-ND5--MT-ATP8	3	16	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0.2188	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	1	1	0.2598	FALSE	43	37	8	105	0	FALSE	ACH-000064
SALE_LUNG	C15orf57--CBX3	5	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	31	21	0.28	0.36	0.0684	0.0957	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SALE_LUNG	0.28	0.36	0.1641	TRUE	267	562	48	632	0	FALSE	ACH-000064
SALE_LUNG	KANSL1--ARL17B	1	22	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	53	44	0.3	0.34	0.0137	0.3008	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SALE_LUNG	0.3	0.34	0.3145	TRUE	105	90	7	93	0	FALSE	ACH-000064
SALE_LUNG	MT-ND6--MT-TE	6	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.082	0.0137	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SALE_LUNG	0.88	1	0.0957	FALSE	499	1288	110	792	0	FALSE	ACH-000064
SALE_LUNG	MT-TA--MT-TC	5	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0684	0.0547	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SALE_LUNG	1	1	0.1231	FALSE	462	80	0	856	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-ATP8	5	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	21976	4	0	0.67	0.0684	0.041	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	0	0.67	0.1094	FALSE	231	217	16	283	0	FALSE	ACH-000064
SALE_LUNG	MT-ND5--MT-ATP8	3	11	MT-ND5	2644	chrM:13980:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	1893	0	0.01	1	0.041	0.1504	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	0.01	1	0.1914	FALSE	43	37	8	105	0	FALSE	ACH-000064
SALE_LUNG	MT-ATP6--MT-ND1	5	2	MT-ATP6	1558	chrM:9084:+	MT-ND1	4887	chrM:3512:+	INCL_NON_REF_SPLICE	YES	3253	8003	0	0	0.0684	0.0273	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SALE_LUNG	0	0	0.0957	FALSE	78	55	12	7	0	FALSE	ACH-000064
SALE_LUNG	MT-ND6--MT-TE	3	10	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.041	0.1367	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SALE_LUNG	0.93	1	0.1777	FALSE	499	1288	110	792	0	FALSE	ACH-000064
SALE_LUNG	MT-ATP6--MT-CO1	5	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	14187	28015	0	0	0.0684	0.0137	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SALE_LUNG	0	0	0.0821	FALSE	183	104	9	328	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0684	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	1	1	0.0684	FALSE	230	193	14	283	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-CO1	5	0	MT-ND4	1245	chrM:11004:+	MT-CO1	6028	chrM:6553:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0684	0	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SALE_LUNG	1	1	0.0684	FALSE	19	89	11	16	0	FALSE	ACH-000064
SALE_LUNG	MT-ATP6--MT-CO1	4	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	14187	0	0	1	0.0547	0.0273	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SALE_LUNG	0	1	0.082	FALSE	182	97	9	327	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-CO1	4	2	MT-ND4	1281	chrM:11040:+	MT-CO1	5695	chrM:6220:+	INCL_NON_REF_SPLICE	YES	19115	22272	0	0	0.0547	0.0273	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SALE_LUNG	0	0	0.082	FALSE	19	89	11	16	0	FALSE	ACH-000064
SALE_LUNG	RPSAP52--HMGA2	4	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	13	223	0.32	0.03	0.0547	0.0273	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SALE_LUNG	0.03	0.32	0.082	FALSE	0	59	0	125	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	21873	0	0	1	0.041	0.0684	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	0	1	0.1094	FALSE	231	217	16	283	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-ND1	4	1	MT-ND4	1209	chrM:10968:+	MT-ND1	5566	chrM:3494:+	INCL_NON_REF_SPLICE	YES	16123	7477	0	0	0.0547	0.0137	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SALE_LUNG	0	0	0.0684	FALSE	51	50	3	16	0	FALSE	ACH-000064
SALE_LUNG	MT-ND6--MT-TE	3	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.041	0.0684	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SALE_LUNG	0.89	1	0.1094	FALSE	499	1288	110	792	0	FALSE	ACH-000064
SALE_LUNG	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.73	1	0.041	0.0684	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SALE_LUNG	0.73	1	0.1094	FALSE	515	4851	409	746	0	FALSE	ACH-000064
SALE_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0547	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SALE_LUNG	1	1	0.0547	FALSE	183	104	9	328	0	FALSE	ACH-000064
SALE_LUNG	MT-CO2--MT-ND2	4	0	MT-CO2	1301	chrM:7886:+	MT-ND2	5509	chrM:5294:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0547	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SALE_LUNG	1	1	0.0547	FALSE	105	46	5	21	0	FALSE	ACH-000064
SALE_LUNG	MT-CO2--MT-ND2	4	0	MT-CO2	1234	chrM:7819:+	MT-ND2	5523	chrM:5308:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0547	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SALE_LUNG	1	1	0.0547	FALSE	105	46	5	21	0	FALSE	ACH-000064
SALE_LUNG	MT-CO2--MT-ND2	4	0	MT-CO2	1276	chrM:7861:+	MT-ND2	5541	chrM:5326:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0547	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SALE_LUNG	1	1	0.0547	FALSE	105	46	5	21	0	FALSE	ACH-000064
SALE_LUNG	MT-ND2--MT-RNR2	4	0	MT-ND2	1462	chrM:4931:+	MT-RNR2	5625	chrM:2253:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0547	0	LOCAL_REARRANGEMENT:+:[1241],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SALE_LUNG	1	1	0.0547	FALSE	19	92	8	6	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	18656	0	0	1	0.041	0.0547	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	0	1	0.0957	FALSE	231	217	16	283	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0547	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	1	1	0.0547	FALSE	231	205	14	283	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0547	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	1	1	0.0547	FALSE	230	198	14	283	0	FALSE	ACH-000064
SALE_LUNG	MT-TA--MT-TC	3	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0.0547	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SALE_LUNG	1	1	0.0957	FALSE	462	80	0	856	0	FALSE	ACH-000064
SALE_LUNG	PRSS8--GDF15	4	0	PRSS8	4614	chr16:31143470:-	GDF15	11121	chr19:18496968:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0547	0	PRSS8->ArcherDX_panel,FoundationOne_panel,chr16:31142756-31147083:-,protease,_serine_8,GDF15->Oncogene{Bushman},chr19:18485541-18499986:+,growth_differentiation_factor_15	SALE_LUNG	1	1	0.0547	TRUE	0	0	0	1	0	TRUE	ACH-000064
SALE_LUNG	MT-ND4--MT-CO1	3	3	MT-ND4	1776	chrM:11535:+	MT-CO1	5922	chrM:6447:+	INCL_NON_REF_SPLICE	YES	21863	25401	0	0	0.041	0.041	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SALE_LUNG	0	0	0.082	FALSE	19	92	11	16	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	22073	0	0	1	0.041	0.0273	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	0	1	0.0683	FALSE	231	217	16	283	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	22073	0	0	1	0.041	0.0273	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	0	1	0.0683	FALSE	231	217	16	283	0	FALSE	ACH-000064
SALE_LUNG	BRI3BP--UBC	3	1	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	16	45	0.2	0.08	0.041	0.0137	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	SALE_LUNG	0.08	0.2	0.0547	TRUE	5	99	5	34	0	FALSE	ACH-000064
SALE_LUNG	MT-CO2--MT-ND2	3	1	MT-CO2	1377	chrM:7962:+	MT-ND2	5414	chrM:5199:+	INCL_NON_REF_SPLICE	YES	21932	12653	0	0	0.041	0.0137	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SALE_LUNG	0	0	0.0547	FALSE	105	46	5	21	0	FALSE	ACH-000064
SALE_LUNG	MT-ND2--MT-RNR2	3	1	MT-ND2	1879	chrM:5348:+	MT-RNR2	5050	chrM:1678:+	INCL_NON_REF_SPLICE	NO	5115	0	0	1	0.041	0.0137	LOCAL_REARRANGEMENT:+:[1241],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SALE_LUNG	0	1	0.0547	FALSE	19	92	8	6	0	FALSE	ACH-000064
SALE_LUNG	MT-ND2--MT-RNR2	3	1	MT-ND2	1741	chrM:5210:+	MT-RNR2	5087	chrM:1715:+	INCL_NON_REF_SPLICE	YES	11995	0	0	1	0.041	0.0137	LOCAL_REARRANGEMENT:+:[1241],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SALE_LUNG	0	1	0.0547	FALSE	19	92	8	6	0	FALSE	ACH-000064
SALE_LUNG	AC005307.3--AC005616.1	3	0	AC005307.3	5855	chr19:29212861:-	AC005616.1	22332	chr19:28983930:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.041	0	AC005307.3->chr19:28926295-29218684:-,AC005616.1->chr19:28982771-29123635:-	SALE_LUNG	1	1	0.041	TRUE	0	2	0	3	2	TRUE	ACH-000064
SALE_LUNG	IGFBP7--KRT17	3	0	IGFBP7	1114	chr4:57976438:-	KRT17	10573	chr17:39780797:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,KRT17->chr17:39775689-39781094:-,keratin_17	SALE_LUNG	1	1	0.041	TRUE	0	0	0	9	0	TRUE	ACH-000064
SALE_LUNG	LTBP4--NEAT1	3	0	LTBP4	14015	chr19:41116563:+	NEAT1	31894	chr11:65190766:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	LTBP4->chr19:41098789-41135725:+,latent_transforming_growth_factor_beta_binding_protein_4,NEAT1->chr11:65190245-65213011:+,nuclear_paraspeckle_assembly_transcript_1_(non-protein_coding)	SALE_LUNG	1	1	0.041	TRUE	0	0	0	1	0	TRUE	ACH-000064
SALE_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SALE_LUNG	1	1	0.041	FALSE	183	104	9	328	0	FALSE	ACH-000064
SALE_LUNG	MT-ATP6--MT-ND1	3	0	MT-ATP6	1126	chrM:8652:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	LOCAL_REARRANGEMENT:+:[4265],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	SALE_LUNG	1	1	0.041	FALSE	78	55	12	7	0	FALSE	ACH-000064
SALE_LUNG	MT-ND2--MT-RNR2	3	0	MT-ND2	1405	chrM:4874:+	MT-RNR2	5050	chrM:1678:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	LOCAL_REARRANGEMENT:+:[1241],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SALE_LUNG	1	1	0.041	FALSE	19	92	8	6	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	1	1	0.041	FALSE	231	217	16	283	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	1	1	0.041	FALSE	231	217	16	283	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	1	1	0.041	FALSE	231	204	14	283	0	FALSE	ACH-000064
SALE_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SALE_LUNG	1	1	0.041	FALSE	231	204	14	283	0	FALSE	ACH-000064
SALE_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SALE_LUNG	1	1	0.041	FALSE	499	1288	110	792	0	FALSE	ACH-000064
SALE_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SALE_LUNG	1	1	0.041	FALSE	499	1288	110	792	0	FALSE	ACH-000064
SALE_LUNG	PRSS8--GDF15	3	0	PRSS8	4634	chr16:31143450:-	GDF15	11143	chr19:18496990:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.041	0	PRSS8->ArcherDX_panel,FoundationOne_panel,chr16:31142756-31147083:-,protease,_serine_8,GDF15->Oncogene{Bushman},chr19:18485541-18499986:+,growth_differentiation_factor_15	SALE_LUNG	1	1	0.041	TRUE	0	0	0	1	0	TRUE	ACH-000064
SALE_LUNG	RP11-219G17.4--PLA2G6	3	0	RP11-219G17.4	2765	chr17:76267333:-	PLA2G6	39371	chr22:38509661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.041	0	GTEx_FI:{Testis=[count:23=pct:21.9],Brain=[count:18=pct:2.7],Nerve=[count:11=pct:6.5],Thyroid=[count:8=pct:4.5],Ovary=[count:6=pct:11.3],Colon=[count:5=pct:2.6],Pancreas=[count:3=pct:1.7],Uterus=[count:2=pct:4.7],Spleen=[count:2=pct:1.8],Blood=[count:2=pct:1.1],Prostate=[count:2=pct:3.3],Vagina=[count:1=pct:1.8],Blood_Vessel=[count:1=pct:0.3],Muscle=[count:1=pct:0.4],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},RP11-219G17.4->chr17:76257430-76274573:-,PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI	SALE_LUNG	1	1	0.041	TRUE	63	15	0	9	0	FALSE	ACH-000064
SALE_LUNG	AP1G2--FN3KRP	2	0	AP1G2	9133	chr14:24029147:-	FN3KRP	18898	chr17:80684925:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	AP1G2->adaptor_related_protein_complex_1_gamma_2_subunit,chr14:24028774-24037279:-,FN3KRP->chr17:80674559-80688204:+,fructosamine_3_kinase_related_protein	SALE_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000064
SALE_LUNG	CHTF8--BDNF-AS	2	0	CHTF8	2554	chr16:69155339:-	BDNF-AS	18013	chr11:27696844:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	CHTF8->chr16:69151913-69166487:-,chr16:69152757-69154331:-,chromosome_transmission_fidelity_factor_8,BDNF-AS->BDNF_antisense_RNA,chr11:27528385-27719721:+	SALE_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000064
SALE_LUNG	FKBP10--HSPA9	2	0	FKBP10	4070	chr17:39974779:+	HSPA9	16907	chr5:137903411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	FKBP10->FK506_binding_protein_10,chr17:39968932-39979465:+,HSPA9->Oncogene{Bushman},chr5:137890571-137911133:-,heat_shock_protein_family_A_(Hsp70)_member_9	SALE_LUNG	1	1	0.0273	TRUE	0	0	0	1	0	TRUE	ACH-000064
SALE_LUNG	KANSL1--ARL17B	1	4	KANSL1	9741	chr17:44171926:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	NO	29	8	0.15	0.38	0.0137	0.0547	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SALE_LUNG	0.15	0.38	0.0684	TRUE	51	25	1	17	0	FALSE	ACH-000064
SALE_LUNG	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0273	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SALE_LUNG	1	1	0.0273	TRUE	465	1949	224	605	0	FALSE	ACH-000064
SALE_LUNG	UVSSA--CTBP1	1	2	UVSSA	7499	chr4:1349033:+	CTBP1	24040	chr4:1235307:-	ONLY_REF_SPLICE	NO	33	64	0.08	0.04	0.0137	0.0273	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Lung=[count:7=pct:4.2],Skin=[count:4=pct:1.3],Whole_Blood=[count:4=pct:3.0],Blood=[count:3=pct:1.7],Pancreas=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Liver=[count:2=pct:1.7],Colon=[count:2=pct:1.0],Thyroid=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=7,Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=2,Pancreas=2,Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=2,Breast_-_Mammary_Tissue=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Vagina=1,Artery_-_Aorta=1,Prostate=1,Liver=1,Thyroid=1,Pituitary=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Spleen=1,Brain_-_Cerebellum=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1,=1},LOCAL_INVERSION:+:-:[97313],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SALE_LUNG	0.04	0.08	0.041	TRUE	23	5	0	14	0	FALSE	ACH-000064
SALE_LUNG	ARHGEF12--SNHG1	1	1	ARHGEF12	19419	chr11:120310930:+	SNHG1	58886	chr11:62621062:-	ONLY_REF_SPLICE	NO	39	1634	0.05	0	0.0137	0.0137	ARHGEF12->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_12,chr11:120207787-120360645:+,SNHG1->chr11:62619460-62623386:-,small_nucleolar_RNA_host_gene_1	SALE_LUNG	0	0.05	0.0274	FALSE	0	0	0	1	0	FALSE	ACH-000064
SALE_LUNG	B4GALT4--IGSF11	1	1	B4GALT4	12789	chr3:118935087:-	IGSF11	30908	chr3:118649122:-	ONLY_REF_SPLICE	NO	236	0	0.01	1	0.0137	0.0137	NEIGHBORS[65664],B4GALT4->beta-1,4-galactosyltransferase_4,chr3:118930579-118959950:-,IGSF11->chr3:118619404-118864915:-,immunoglobulin_superfamily_member_11	SALE_LUNG	0.01	1	0.0274	FALSE	10	5	0	3	0	FALSE	ACH-000064
CORL47_LUNG	RLF--MYCL	3744	1145	RLF	1264	chr1:40627308:+	MYCL	20892	chr1:40363642:-	ONLY_REF_SPLICE	YES	2	495	1	0.91	38.2174	11.6878	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	CORL47_LUNG	0.91	1	49.9052	TRUE	0	0	0	10	0	TRUE	ACH-000695
CORL47_LUNG	RLF--MYCL	1491	1639	RLF	1264	chr1:40627308:+	MYCL	18060	chr1:40367115:-	ONLY_REF_SPLICE	YES	2	9	1	1	15.2196	16.7303	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	CORL47_LUNG	1	1	31.9499	TRUE	0	0	0	6	0	TRUE	ACH-000695
CORL47_LUNG	RLF--MYCL	12	1130	RLF	1264	chr1:40627308:+	MYCL	20894	chr1:40363640:-	INCL_NON_REF_SPLICE	YES	2	490	1	0.7	0.1225	11.5346	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	CORL47_LUNG	0.7	1	11.6571	TRUE	0	0	0	10	0	TRUE	ACH-000695
CORL47_LUNG	FAF1--AGBL4	68	11	FAF1	1497	chr1:51425439:-	AGBL4	34989	chr1:49711536:-	ONLY_REF_SPLICE	YES	15	4	0.84	0.95	0.6941	0.1123	{Klijn_CCL:Lung=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	CORL47_LUNG	0.84	0.95	0.8064	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	MT-TA--MT-TC	61	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6227	0.0919	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL47_LUNG	1	1	0.7146	FALSE	462	80	0	856	0	FALSE	ACH-000695
CORL47_LUNG	PNO1--RP11-215P8.4	46	10	PNO1	4135	chr2:68389795:+	RP11-215P8.4	11976	chr5:133765642:-	ONLY_REF_SPLICE	YES	23	0	0.71	1	0.4696	0.1021	PNO1->chr2:68384976-68403370:+,partner_of_NOB1_homolog,RP11-215P8.4->chr5:133764742-133796306:-	CORL47_LUNG	0.71	1	0.5717	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	ZNF654--HMGB2	45	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4593	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CORL47_LUNG	1	1	0.4593	TRUE	0	0	0	518	0	FALSE	ACH-000695
CORL47_LUNG	RPS6KA5--IRS1	37	7	RPS6KA5	18192	chr14:91356831:-	IRS1	33404	chr2:227600966:-	ONLY_REF_SPLICE	YES	15	2	0.75	0.96	0.3777	0.0715	RPS6KA5->chr14:91336799-91526980:-,ribosomal_protein_S6_kinase_A5,IRS1->chr2:227596033-227664475:-,insulin_receptor_substrate_1	CORL47_LUNG	0.75	0.96	0.4492	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	TIMM23B--LINC00843	33	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3369	0.1123	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CORL47_LUNG	1	1	0.4492	TRUE	508	994	45	981	0	FALSE	ACH-000695
CORL47_LUNG	AGBL4--BEND5	21	12	AGBL4	8128	chr1:49332863:-	BEND5	28501	chr1:49227142:-	ONLY_REF_SPLICE	YES	27	31	0.55	0.52	0.2144	0.1225	NEIGHBORS_OVERLAP:-:-:[49446],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	CORL47_LUNG	0.52	0.55	0.3369	FALSE	0	10	1	4	0	FALSE	ACH-000695
CORL47_LUNG	RP11-680G10.1--GSE1	22	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	116	1	0.18	0.2246	0.0408	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CORL47_LUNG	0.18	1	0.2654	TRUE	465	1949	224	605	0	FALSE	ACH-000695
CORL47_LUNG	TIMM23--RP11-464F9.1	19	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	53	0	0.27	1	0.1939	0.0102	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CORL47_LUNG	0.27	1	0.2041	TRUE	519	3926	326	965	0	FALSE	ACH-000695
CORL47_LUNG	AMN1--DDX11L2	16	1	AMN1	1204	chr12:31881905:-	DDX11L2	16031	chr2:114359006:-	INCL_NON_REF_SPLICE	YES	1	1	0.94	0.94	0.1633	0.0102	AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	CORL47_LUNG	0.94	0.94	0.1735	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	PPP3R1--PHF15	15	4	PPP3R1	4763	chr2:68444224:-	PHF15	17162	chr5:133871548:+	ONLY_REF_SPLICE	YES	12	1	0.61	0.95	0.1531	0.0408	PPP3R1->chr2:68405989-68483369:-,protein_phosphatase_3_regulatory_subunit_B,_alpha,PHF15->chr5:133860003-133918918:+	CORL47_LUNG	0.61	0.95	0.1939	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	MT-ND6--MT-TE	14	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1429	0.0306	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL47_LUNG	1	1	0.1735	FALSE	499	1288	110	792	0	FALSE	ACH-000695
CORL47_LUNG	RP11-141M1.3--STARD13	10	7	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1021	0.0715	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	CORL47_LUNG	1	1	0.1736	FALSE	141	264	50	91	0	FALSE	ACH-000695
CORL47_LUNG	PPP3R1--AC005355.1	10	2	PPP3R1	4763	chr2:68444224:-	AC005355.1	15265	chr5:133827820:+	ONLY_REF_SPLICE	YES	12	0	0.5	1	0.1021	0.0204	PPP3R1->chr2:68405989-68483369:-,protein_phosphatase_3_regulatory_subunit_B,_alpha,AC005355.1->chr5:133772402-133828210:+	CORL47_LUNG	0.5	1	0.1225	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	MT-ATP6--MT-CO2	10	0	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1021	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CORL47_LUNG	1	1	0.1021	FALSE	59	21	0	114	0	FALSE	ACH-000695
CORL47_LUNG	MT-TA--MT-TC	8	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0817	0.0715	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL47_LUNG	1	1	0.1532	FALSE	462	80	0	856	0	FALSE	ACH-000695
CORL47_LUNG	RP11-680G10.1--GSE1	8	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	9	1	0.61	0.0817	0.0612	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CORL47_LUNG	0.61	1	0.1429	TRUE	458	1351	185	561	0	FALSE	ACH-000695
CORL47_LUNG	AMN1--DDX11L2	9	0	AMN1	1184	chr12:31881925:-	DDX11L2	16031	chr2:114359006:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0919	0	AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	CORL47_LUNG	1	1	0.0919	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0919	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CORL47_LUNG	1	1	0.0919	TRUE	0	0	0	434	0	FALSE	ACH-000695
CORL47_LUNG	RP11-123O10.4--GRIP1	9	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0919	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CORL47_LUNG	1	1	0.0919	FALSE	416	2512	207	587	0	FALSE	ACH-000695
CORL47_LUNG	MT-ND6--MT-TE	7	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0715	0.0715	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL47_LUNG	0.88	1	0.143	FALSE	499	1288	110	792	0	FALSE	ACH-000695
CORL47_LUNG	CAP1--PPT1	8	1	CAP1	1569	chr1:40506473:+	PPT1	20129	chr1:40558179:-	ONLY_REF_SPLICE	YES	51	1791	0.15	0.01	0.0817	0.0102	LOCAL_INVERSION:+:-:[58],CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1	CORL47_LUNG	0.01	0.15	0.0919	FALSE	0	0	0	1	0	FALSE	ACH-000695
CORL47_LUNG	MT-ATP6--MT-CO2	8	0	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0817	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CORL47_LUNG	1	1	0.0817	FALSE	59	21	0	114	0	FALSE	ACH-000695
CORL47_LUNG	AGBL4--BEND5	7	3	AGBL4	8128	chr1:49332863:-	BEND5	30006	chr1:49224956:-	ONLY_REF_SPLICE	YES	27	19	0.27	0.34	0.0715	0.0306	NEIGHBORS_OVERLAP:-:-:[49446],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	CORL47_LUNG	0.27	0.34	0.1021	FALSE	0	2	2	2	0	FALSE	ACH-000695
CORL47_LUNG	C15orf57--CBX3	6	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	44	22	0.19	0.31	0.0612	0.0408	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CORL47_LUNG	0.19	0.31	0.102	TRUE	267	562	48	632	0	FALSE	ACH-000695
CORL47_LUNG	MT-ND6--MT-TE	6	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0612	0.0306	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CORL47_LUNG	1	1	0.0918	FALSE	499	1288	110	792	0	FALSE	ACH-000695
CORL47_LUNG	CPSF6--CHMP1A	6	1	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	72	144	0.09	0.05	0.0612	0.0102	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	CORL47_LUNG	0.05	0.09	0.0714	TRUE	95	74	6	34	0	FALSE	ACH-000695
CORL47_LUNG	LINC01014--KCNMB2	6	1	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	1	293	0.88	0.02	0.0612	0.0102	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	CORL47_LUNG	0.02	0.88	0.0714	FALSE	11	60	26	37	0	FALSE	ACH-000695
CORL47_LUNG	MT-ATP6--MT-CO1	6	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	5129	13349	0	0	0.0612	0.0102	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL47_LUNG	0	0	0.0714	FALSE	183	104	9	328	0	FALSE	ACH-000695
CORL47_LUNG	MT-ND5--MT-CO1	5	5	MT-ND5	2798	chrM:14134:+	MT-CO1	6375	chrM:6466:+	INCL_NON_REF_SPLICE	YES	0	10602	1	0	0.051	0.051	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL47_LUNG	0	1	0.102	FALSE	8	11	2	9	0	FALSE	ACH-000695
CORL47_LUNG	MT-ATP6--MT-CO2	6	0	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0612	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CORL47_LUNG	1	1	0.0612	FALSE	59	21	0	114	0	FALSE	ACH-000695
CORL47_LUNG	RP4-565E6.1--HYDIN	5	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.89	0.051	0.0306	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	CORL47_LUNG	0.89	1	0.0816	TRUE	456	1387	91	133	0	FALSE	ACH-000695
CORL47_LUNG	MT-ATP6--MT-CO1	5	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	5969	13087	0	0	0.051	0.0204	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL47_LUNG	0	0	0.0714	FALSE	183	104	9	328	0	FALSE	ACH-000695
CORL47_LUNG	LINC01014--KCNMB2	5	1	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	1	322	0.86	0.02	0.051	0.0102	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	CORL47_LUNG	0.02	0.86	0.0612	FALSE	12	33	18	33	0	FALSE	ACH-000695
CORL47_LUNG	CAP1--PPT1	5	0	CAP1	1551	chr1:40506455:+	PPT1	20129	chr1:40558179:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.051	0	LOCAL_INVERSION:+:-:[58],CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1	CORL47_LUNG	1	1	0.051	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	MT-ATP6--MT-CO1	5	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.051	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL47_LUNG	1	1	0.051	FALSE	183	104	9	328	0	FALSE	ACH-000695
CORL47_LUNG	MT-CO1--MT-RNR2	4	4	MT-CO1	1642	chrM:6545:+	MT-RNR2	5587	chrM:1715:+	INCL_NON_REF_SPLICE	YES	12855	0	0	1	0.0408	0.0408	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL47_LUNG	0	1	0.0816	FALSE	44	51	6	21	0	FALSE	ACH-000695
CORL47_LUNG	MT-CO1--MT-RNR2	4	4	MT-CO1	1653	chrM:6556:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	13450	0	0	1	0.0408	0.0408	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL47_LUNG	0	1	0.0816	FALSE	44	51	6	21	0	FALSE	ACH-000695
CORL47_LUNG	PPT1--CAP1	4	2	PPT1	6334	chr1:40555082:-	CAP1	19700	chr1:40525006:+	ONLY_REF_SPLICE	YES	2368	131	0	0.04	0.0408	0.0204	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[58],PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1,CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+	CORL47_LUNG	0	0.04	0.0612	FALSE	0	0	0	1	0	FALSE	ACH-000695
CORL47_LUNG	AGBL4--BEND5	4	1	AGBL4	7088	chr1:49511256:-	BEND5	30006	chr1:49224956:-	ONLY_REF_SPLICE	YES	23	19	0.18	0.21	0.0408	0.0102	NEIGHBORS_OVERLAP:-:-:[49446],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	CORL47_LUNG	0.18	0.21	0.051	FALSE	0	4	0	2	0	FALSE	ACH-000695
CORL47_LUNG	RP11-120D5.1--MID1	4	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	7	0.83	0.42	0.0408	0.0102	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL47_LUNG	0.42	0.83	0.051	FALSE	16	356	14	466	0	FALSE	ACH-000695
CORL47_LUNG	TRAF4--SUPT6H	4	1	TRAF4	4740	chr17:27074965:+	SUPT6H	33076	chr17:27022370:+	ONLY_REF_SPLICE	YES	57	109	0.08	0.04	0.0408	0.0102	LOCAL_REARRANGEMENT:+:[41305],TRAF4->Oncogene{Bushman},TNF_receptor_associated_factor_4,chr17:27071002-27077974:+,SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+	CORL47_LUNG	0.04	0.08	0.051	TRUE	0	0	0	1	0	FALSE	ACH-000695
CORL47_LUNG	AGBL4--BEND5	2	8	AGBL4	7088	chr1:49511256:-	BEND5	28501	chr1:49227142:-	ONLY_REF_SPLICE	YES	23	31	0.3	0.24	0.0204	0.0817	NEIGHBORS_OVERLAP:-:-:[49446],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	CORL47_LUNG	0.24	0.3	0.1021	FALSE	0	10	2	2	0	FALSE	ACH-000695
CORL47_LUNG	MT-ND5--MT-CO1	3	4	MT-ND5	2217	chrM:13553:+	MT-CO1	6357	chrM:6448:+	INCL_NON_REF_SPLICE	YES	1992	11057	0	0	0.0306	0.0408	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL47_LUNG	0	0	0.0714	FALSE	8	12	2	9	0	FALSE	ACH-000695
CORL47_LUNG	MT-TA--MT-TC	4	0	MT-TA	1029	chrM:5627:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL47_LUNG	1	1	0.0408	FALSE	462	80	0	856	0	FALSE	ACH-000695
CORL47_LUNG	ZNF654--HMGB2	4	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CORL47_LUNG	1	1	0.0408	TRUE	0	0	0	518	0	FALSE	ACH-000695
CORL47_LUNG	FAF1--AGBL4	1	11	FAF1	1497	chr1:51425439:-	AGBL4	31364	chr1:50317190:-	ONLY_REF_SPLICE	NO	15	1	0.44	0.92	0.0102	0.1123	{Klijn_CCL:Lung=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-	CORL47_LUNG	0.44	0.92	0.1225	TRUE	0	0	0	2	0	TRUE	ACH-000695
CORL47_LUNG	MT-ND5--MT-CO1	3	3	MT-ND5	2718	chrM:14054:+	MT-CO1	6466	chrM:6557:+	INCL_NON_REF_SPLICE	YES	18	13499	0.25	0	0.0306	0.0306	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL47_LUNG	0	0.25	0.0612	FALSE	8	12	2	9	0	FALSE	ACH-000695
CORL47_LUNG	RP11-141M1.3--STARD13	2	7	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0.0715	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	CORL47_LUNG	1	1	0.0919	FALSE	49	120	16	70	0	FALSE	ACH-000695
CORL47_LUNG	GATS--PILRB	3	2	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	51	40	0.09	0.11	0.0306	0.0204	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	CORL47_LUNG	0.09	0.11	0.051	TRUE	57	41	2	35	0	FALSE	ACH-000695
CORL47_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5314	chrM:6536:+	INCL_NON_REF_SPLICE	YES	5969	12531	0	0	0.0306	0.0204	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL47_LUNG	0	0	0.051	FALSE	183	104	9	328	0	FALSE	ACH-000695
CORL47_LUNG	AGBL4--BEND5	3	1	AGBL4	8128	chr1:49332863:-	BEND5	31391	chr1:49208443:-	ONLY_REF_SPLICE	YES	27	27	0.13	0.13	0.0306	0.0102	NEIGHBORS_OVERLAP:-:-:[49446],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,BEND5->BEN_domain_containing_5,chr1:49193195-49242641:-	CORL47_LUNG	0.13	0.13	0.0408	FALSE	0	1	0	1	0	FALSE	ACH-000695
CORL47_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	4759	10523	0	0	0.0306	0.0102	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CORL47_LUNG	0	0	0.0408	FALSE	183	104	9	328	0	FALSE	ACH-000695
CORL47_LUNG	MT-CO1--MT-RNR2	3	1	MT-CO1	1603	chrM:6506:+	MT-RNR2	5550	chrM:1678:+	INCL_NON_REF_SPLICE	YES	11076	0	0	1	0.0306	0.0102	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CORL47_LUNG	0	1	0.0408	FALSE	44	51	6	21	0	FALSE	ACH-000695
CORL47_LUNG	CAP1--PPT1	3	0	CAP1	1569	chr1:40506473:+	PPT1	24619	chr1:40546159:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	LOCAL_INVERSION:+:-:[58],CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1	CORL47_LUNG	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	DNAJC24--IMMP1L	3	0	DNAJC24	2020	chr11:31392406:+	IMMP1L	34941	chr11:31455117:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Nerve_-_Tibial=2,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Pancreas=1},LOCAL_INVERSION:+:-:[552],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	CORL47_LUNG	1	1	0.0306	TRUE	0	4	0	9	1	TRUE	ACH-000695
CORL47_LUNG	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CORL47_LUNG	1	1	0.0306	FALSE	462	80	0	856	0	FALSE	ACH-000695
CORL47_LUNG	NEDD8--MARCKSL1	3	0	NEDD8	7589	chr14:24686255:-	MARCKSL1	13039	chr1:32799728:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	NEDD8->chr14:24686058-24701660:-,neural_precursor_cell_expressed,_developmentally_down-regulated_8,MARCKSL1->MARCKS-like_1,chr1:32799433-32801980:-	CORL47_LUNG	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	SREBF2--AHSA1	3	0	SREBF2	1254	chr22:42229362:+	AHSA1	34340	chr14:77930941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,AHSA1->activator_of_Hsp90_ATPase_activity_1,chr14:77924213-77935817:+	CORL47_LUNG	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	TENM3--ELF2	3	0	TENM3	4123	chr4:183245405:+	ELF2	56126	chr4:139994721:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	TENM3->chr4:183065140-183724177:+,teneurin_transmembrane_protein_3,ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-	CORL47_LUNG	1	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	DNAJC25--UGCG	2	1	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	73	20	0.04	0.13	0.0204	0.0102	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	CORL47_LUNG	0.04	0.13	0.0306	TRUE	50	73	10	50	0	FALSE	ACH-000695
CORL47_LUNG	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	1	2	0.75	0.6	0.0204	0.0102	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	CORL47_LUNG	0.6	0.75	0.0306	FALSE	0	23	1	67	0	FALSE	ACH-000695
CORL47_LUNG	SCAF4--CHMP1A	2	1	SCAF4	16796	chr21:33057362:-	CHMP1A	27950	chr16:89713739:-	ONLY_REF_SPLICE	YES	48	144	0.06	0.02	0.0204	0.0102	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.03%,GTEx_FI:{Skin=[count:3=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=22;pct=0.25%;dist=Small_Intestine_-_Terminal_Ileum=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Breast_-_Mammary_Tissue=1,Lung=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Brain_-_Frontal_Cortex_(BA9)=1,Uterus=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellar_Hemisphere=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Testis=1,Cells_-_Transformed_fibroblasts=1},SCAF4->SR-related_CTD_associated_factor_4,chr21:33043346-33104388:-,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	CORL47_LUNG	0.02	0.06	0.0306	TRUE	8	8	2	7	0	FALSE	ACH-000695
CORL47_LUNG	AC074117.10--WARS	2	0	AC074117.10	2657	chr2:27580769:+	WARS	23809	chr14:100809724:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	AC074117.10->chr2:27579113-27590489:+,WARS->chr14:100800125-100843142:-,tryptophanyl-tRNA_synthetase	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	ATP2C1--MRPL3	2	0	ATP2C1	5569	chr3:130613619:+	MRPL3	48804	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ATP2C1->ATPase_secretory_pathway_Ca2+_transporting_1,chr3:130569439-130735556:+,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	ATXN2--NDUFAF5	2	0	ATXN2	21230	chr12:111923075:-	NDUFAF5	41484	chr20:13775484:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ATXN2->ataxin_2,chr12:111890018-112037480:-,NDUFAF5->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_5,chr20:13765596-13799067:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	C14orf37--CDC5L	2	0	C14orf37	2258	chr14:58758353:-	CDC5L	26075	chr6:44364078:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,CDC5L->cell_division_cycle_5_like,chr6:44355262-44418163:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	CALM2--NRXN1	2	0	CALM2	1161	chr2:47403580:-	NRXN1	53766	chr2:50318632:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,NRXN1->chr2:50145643-51259674:-,neurexin_1	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	CALM3--FAM83D	2	0	CALM3	6082	chr19:47111584:+	FAM83D	13163	chr20:37570602:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,FAM83D->chr20:37554955-37581703:+,family_with_sequence_similarity_83_member_D	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	CAP1--PPT1	2	0	CAP1	2261	chr1:40507165:+	PPT1	22378	chr1:40555184:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_INVERSION:+:-:[58],CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	CHN2--PHF14	2	0	CHN2	7426	chr7:29186576:+	PHF14	45399	chr7:11021999:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CHN2->chimerin_2,chr7:29161890-29553944:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	CLTC--APPBP2	2	0	CLTC	1316	chr17:57697534:+	APPBP2	54438	chr17:58531853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	CLYBL--PCCA	2	0	CLYBL	3469	chr13:100511303:+	PCCA	51656	chr13:101179929:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CLYBL->chr13:100258919-100549387:+,citrate_lyase_beta_like,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	CTD-2006C1.2--SLC3A2	2	0	CTD-2006C1.2	3469	chr19:12112637:+	SLC3A2	25695	chr11:62650380:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CTD-2006C1.2->chr19:12098432-12157090:+,SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	DDX50--MARCH6	2	0	DDX50	1194	chr10:70661227:+	MARCH6	39482	chr5:10414545:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	DDX50->DEAD-box_helicase_50,chr10:70661034-70706603:+,MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	EEF2K--CCP110	2	0	EEF2K	1398	chr16:22218000:+	CCP110	39874	chr16:19559277:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	EEF2K->chr16:22217603-22298554:+,eukaryotic_elongation_factor_2_kinase,CCP110->centriolar_coiled-coil_protein_110kDa,chr16:19535133-19564730:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	ERBB4--METTL21A	2	0	ERBB4	25807	chr2:212426628:-	METTL21A	52058	chr2:208478167:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ERBB4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:212240446-213403565:-,erb-b2_receptor_tyrosine_kinase_4,METTL21A->Oncogene{Bushman},chr2:208445355-208490652:-,methyltransferase_like_21A	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	FAXC--PRIM2	2	0	FAXC	4289	chr6:99781227:-	PRIM2	35865	chr6:57393112:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	FAXC->chr6:99719045-99797938:-,failed_axon_connections_homolog,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	FKBP1A--MYH10	2	0	FKBP1A	1329	chr20:1373478:-	MYH10	29371	chr17:8424603:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	FKBP1A->FK506_binding_protein_1A,chr20:1349622-1373806:-,MYH10->chr17:8377523-8534079:-,myosin,_heavy_chain_10,_non-muscle	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	FMN2--ALG11	2	0	FMN2	6146	chr1:240286645:+	ALG11	36090	chr13:52593049:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	FMN2->chr1:240177648-240638489:+,formin_2,ALG11->ALG11,_alpha-1,2-mannosyltransferase,chr13:52586534-52603800:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	GFOD1--BRAF	2	0	GFOD1	2025	chr6:13486870:-	BRAF	20340	chr7:140550012:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GFOD1->chr6:13358062-13487894:-,glucose-fructose_oxidoreductase_domain_containing_1,BRAF->ArcherDX_panel,B-Raf_proto-oncogene,_serine/threonine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:140419127-140624564:-	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	GTF2F2--MIPEPP3	2	0	GTF2F2	4445	chr13:45725966:+	MIPEPP3	17114	chr13:21875558:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTF2F2->chr13:45694650-45858237:+,general_transcription_factor_IIF_subunit_2,MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	HNRNPL--HMGXB4	2	0	HNRNPL	7921	chr19:39334482:-	HMGXB4	20940	chr22:35658316:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	HNRNPL->chr19:39327028-39342987:-,heterogeneous_nuclear_ribonucleoprotein_L,HMGXB4->HMG-box_containing_4,chr22:35653445-35691800:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	IARS--RP11-1084J3.4	2	0	IARS	1146	chr9:95055893:-	RP11-1084J3.4	38140	chr5:34124633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase,RP11-1084J3.4->chr5:33987279-34124633:-	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	JTB--SNAPIN	2	0	JTB	2863	chr1:153948302:-	SNAPIN	7905	chr1:153631614:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	{Klijn_CCL:Uterus=1,Ovary=1},JTB->chr1:153946745-153950164:-,jumping_translocation_breakpoint,SNAPIN->SNAP_associated_protein,chr1:153631130-153634306:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	3	0	TRUE	ACH-000695
CORL47_LUNG	KIAA0319--HIRA	2	0	KIAA0319	16152	chr6:24569009:-	HIRA	58160	chr22:19319079:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	KIAA0319->KIAA0319,chr6:24544332-24646383:-,HIRA->chr22:19318221-19435224:-,histone_cell_cycle_regulator	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	KIF2A--CFL1	2	0	KIF2A	1375	chr5:61602363:+	CFL1	36955	chr11:65623713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	KIF2A->chr5:61601989-61833076:+,kinesin_heavy_chain_member_2A,CFL1->chr11:65590493-65629497:-,cofilin_1	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	MIPEPP3--CTDSPL2	2	0	MIPEPP3	2501	chr13:21875757:+	CTDSPL2	20752	chr15:44806796:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	MKL2--PTPN12	2	0	MKL2	4491	chr16:14234617:+	PTPN12	52248	chr7:77227159:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	MKL2->MKL1/myocardin_like_2,chr16:14165178-14360630:+,PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	NDUFA4--PHF14	2	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	CORL47_LUNG	1	1	0.0204	TRUE	19	32	3	60	0	FALSE	ACH-000695
CORL47_LUNG	NDUFA6-AS1--SREBF2	2	0	NDUFA6-AS1	1670	chr22:42487604:+	SREBF2	21606	chr22:42262835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NDUFA6-AS1->NDUFA6_antisense_RNA_1_(head_to_head),chr22:42486935-42535286:+,SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	PHF21B--FTO	2	0	PHF21B	2455	chr22:45404426:-	FTO	37490	chr16:53922744:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	PHF21B->PHD_finger_protein_21B,chr22:45277042-45405880:-,FTO->chr16:53737875-54155853:+,fat_mass_and_obesity_associated	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	PPT1--CAP1	2	0	PPT1	1589	chr1:40562787:-	CAP1	19700	chr1:40525006:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[58],PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1,CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	RP11-120D5.1--HSPBAP1	2	0	RP11-120D5.1	4510	chrX:11074056:-	HSPBAP1	27271	chr3:122459960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	RP11-120D5.1->chrX:10865996-11129261:-,HSPBAP1->HSPB1_associated_protein_1,Oncogene{Bushman},chr3:122458846-122512671:-	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	RP11-1379J22.5--ENOPH1	2	0	RP11-1379J22.5	1720	chr5:179085482:+	ENOPH1	8312	chr4:83369073:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	RP11-1379J22.5->chr5:179084763-179091433:+,ENOPH1->chr4:83351715-83382244:+,enolase-phosphatase_1	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	RP11-319G9.5--WWOX	2	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	CORL47_LUNG	1	1	0.0204	FALSE	154	425	28	76	0	FALSE	ACH-000695
CORL47_LUNG	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	CORL47_LUNG	1	1	0.0204	TRUE	0	1	0	17	0	TRUE	ACH-000695
CORL47_LUNG	SIVA1--DYNC1H1	2	0	SIVA1	1220	chr14:105219656:+	DYNC1H1	15033	chr14:102445656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	SIVA1->SIVA1_apoptosis_inducing_factor,chr14:105219437-105234831:+,DYNC1H1->chr14:102430865-102517129:+,dynein_cytoplasmic_1_heavy_chain_1	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	SMYD3--TTC13	2	0	SMYD3	13047	chr1:246350045:-	TTC13	34642	chr1:231097049:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,TTC13->chr1:231041989-231114621:-,tetratricopeptide_repeat_domain_13	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	SNRPN--SYT1	2	0	SNRPN	11083	chr15:25213229:+	SYT1	28163	chr12:79389539:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	SNRPN->chr15:25068794-25223870:+,small_nuclear_ribonucleoprotein_polypeptide_N,SYT1->chr12:79257773-79845788:+,synaptotagmin_1	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	SPIN1--TUG1	2	0	SPIN1	1120	chr9:91003453:+	TUG1	19869	chr22:31368841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	SPIN1->chr9:91003334-91093609:+,spindlin_1,TUG1->chr22:31366663-31375381:+,taurine_up-regulated_1_(non-protein_coding)	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	TMX1--GPHN	2	0	TMX1	6512	chr14:51716483:+	GPHN	30739	chr14:67490350:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	TMX1->chr14:51706880-51722759:+,thioredoxin_related_transmembrane_protein_1,GPHN->Oncogene{Bushman},chr14:66974125-67648520:+,gephyrin	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	TNFAIP8--MYCL	2	0	TNFAIP8	1216	chr5:118604602:+	MYCL	22237	chr1:40363642:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,MYCL->ArcherDX_panel,FoundationOne_panel,chr1:40361098-40367928:-,v-myc_avian_myelocytomatosis_viral_oncogene_lung_carcinoma_derived_homolog	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	TPPP--TERT	2	0	TPPP	2433	chr5:677865:-	TERT	20989	chr5:1268748:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	TPPP->chr5:660883-693510:-,tubulin_polymerization_promoting_protein,TERT->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:1253262-1295184:-,telomerase_reverse_transcriptase	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	WBP2--NDUFS1	2	0	WBP2	3549	chr17:73848737:-	NDUFS1	14567	chr2:207018406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	WBP2->WW_domain_binding_protein_2,chr17:73841780-73852588:-,NDUFS1->NADH:ubiquinone_oxidoreductase_core_subunit_S1,chr2:206979541-207024327:-	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	XRRA1--DPYSL3	2	0	XRRA1	1273	chr11:74659973:-	DPYSL3	43080	chr5:146785293:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	XRRA1->X-ray_radiation_resistance_associated_1,chr11:74518784-74660245:-,DPYSL3->chr5:146770374-146889619:-,dihydropyrimidinase_like_3	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	ZC3H7B--MKL1	2	0	ZC3H7B	14403	chr22:41736141:+	MKL1	48301	chr22:40807911:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ZC3H7B->chr22:41697526-41756151:+,zinc_finger_CCCH-type_containing_7B,MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	ZFYVE28--BRF1	2	0	ZFYVE28	5035	chr4:2355660:-	BRF1	61074	chr14:105688251:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ZFYVE28->chr4:2271309-2420390:-,zinc_finger_FYVE-type_containing_28,BRF1->BRF1,_RNA_polymerase_III_transcription_initiation_factor_90_kDa_subunit,chr14:105675623-105781926:-	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	ZNF608--CCDC14	2	0	ZNF608	6075	chr5:124036707:-	CCDC14	30180	chr3:123667979:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608,CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14	CORL47_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000695
CORL47_LUNG	ZNRF3--HSCB	2	0	ZNRF3	3718	chr22:29383189:+	HSCB	25276	chr22:29153066:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ZNRF3->chr22:29279580-29453475:+,zinc_and_ring_finger_3,HSCB->HscB_mitochondrial_iron-sulfur_cluster_co-chaperone,chr22:29138019-29153503:+	CORL47_LUNG	1	1	0.0204	TRUE	0	1	0	1	1	TRUE	ACH-000695
CORL47_LUNG	DYNC1I1--SHFM1	1	2	DYNC1I1	10897	chr7:95499310:+	SHFM1	35793	chr7:96324203:-	ONLY_REF_SPLICE	YES	35	435	0.08	0.01	0.0102	0.0204	DYNC1I1->chr7:95401866-95739634:+,dynein_cytoplasmic_1_intermediate_chain_1,SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1	CORL47_LUNG	0.01	0.08	0.0306	FALSE	0	1	0	1	1	FALSE	ACH-000695
CORL47_LUNG	PPT1--CAP1	1	2	PPT1	6334	chr1:40555082:-	CAP1	19703	chr1:40525009:+	ONLY_REF_SPLICE	YES	2368	113	0	0.03	0.0102	0.0204	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[58],PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1,CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+	CORL47_LUNG	0	0.03	0.0306	FALSE	0	0	0	1	0	FALSE	ACH-000695
CORL47_LUNG	CAP1--PPT1	1	1	CAP1	2261	chr1:40507165:+	PPT1	20129	chr1:40558179:-	ONLY_REF_SPLICE	NO	115	1791	0.02	0	0.0102	0.0102	LOCAL_INVERSION:+:-:[58],CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1	CORL47_LUNG	0	0.02	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000695
CORL47_LUNG	CAP1--PPT1	1	1	CAP1	1569	chr1:40506473:+	PPT1	19042	chr1:40559691:-	ONLY_REF_SPLICE	YES	51	1959	0.04	0	0.0102	0.0102	LOCAL_INVERSION:+:-:[58],CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,PPT1->chr1:40538379-40563375:-,palmitoyl-protein_thioesterase_1	CORL47_LUNG	0	0.04	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000695
CORL47_LUNG	CCDC122--ENOX1	1	1	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	NO	12	10	0.14	0.17	0.0102	0.0102	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	CORL47_LUNG	0.14	0.17	0.0204	FALSE	39	52	2	34	0	FALSE	ACH-000695
CORL47_LUNG	CMTM8--CMTM7	1	1	CMTM8	3732	chr3:32409480:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	14	1	0.12	0.67	0.0102	0.0102	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	CORL47_LUNG	0.12	0.67	0.0204	FALSE	3	14	0	5	0	FALSE	ACH-000695
CORL47_LUNG	DENND6A--QRICH1	1	1	DENND6A	1308	chr3:57678509:-	QRICH1	30876	chr3:49084679:-	ONLY_REF_SPLICE	YES	18	39	0.1	0.05	0.0102	0.0102	DENND6A->DENN_domain_containing_6A,chr3:57611184-57678816:-,QRICH1->chr3:49067140-49131796:-,glutamine_rich_1	CORL47_LUNG	0.05	0.1	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000695
CORL47_LUNG	DNMT1--KIAA1324	1	1	DNMT1	4841	chr19:10305496:-	KIAA1324	49324	chr1:109727667:+	ONLY_REF_SPLICE	YES	88	124	0.02	0.02	0.0102	0.0102	DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-,KIAA1324->KIAA1324,chr1:109656301-109749401:+	CORL47_LUNG	0.02	0.02	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000695
CORL47_LUNG	LDLRAD3--PRR5L	1	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	30278	chr11:36415396:+	ONLY_REF_SPLICE	YES	34	1	0.06	0.67	0.0102	0.0102	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	CORL47_LUNG	0.06	0.67	0.0204	FALSE	12	80	1	10	0	FALSE	ACH-000695
CORL47_LUNG	UBAC2--TMTC4	1	1	UBAC2	14124	chr13:100020160:+	TMTC4	38123	chr13:101266684:-	ONLY_REF_SPLICE	YES	86	75	0.02	0.03	0.0102	0.0102	UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,TMTC4->chr13:101256181-101327347:-,transmembrane_and_tetratricopeptide_repeat_containing_4	CORL47_LUNG	0.02	0.03	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000695
SKHEP1_LIVER	TIMM23B--LINC00843	87	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0367	0.2026	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKHEP1_LIVER	1	1	1.2393	TRUE	508	994	45	981	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ND4--MT-ND4L	48	143	MT-ND4	1213	chrM:10972:+	MT-ND4L	5376	chrM:10467:+	INCL_NON_REF_SPLICE	YES	86	0	0.69	1	0.572	1.7039	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKHEP1_LIVER	0.69	1	2.2759	FALSE	344	826	44	306	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-TA--MT-TC	59	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.703	0.0477	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKHEP1_LIVER	1	1	0.7507	FALSE	462	80	0	856	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ND6--MT-ND5	54	1	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1521	1	0.03	0.6434	0.0119	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SKHEP1_LIVER	0.03	1	0.6553	FALSE	101	855	57	72	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ND4--MT-ND4L	13	142	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	87	1	0.64	0.99	0.1549	1.692	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKHEP1_LIVER	0.64	0.99	1.8469	FALSE	344	826	44	306	0	FALSE	ACH-000361
SKHEP1_LIVER	TIMM23--RP11-464F9.1	41	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	253	4	0.15	0.92	0.4885	0.0357	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKHEP1_LIVER	0.15	0.92	0.5242	TRUE	519	3926	326	965	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ND4--MT-ND4L	3	142	MT-ND4	1110	chrM:10869:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	55	1	0.72	0.99	0.0357	1.692	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKHEP1_LIVER	0.72	0.99	1.7277	FALSE	344	826	44	306	0	FALSE	ACH-000361
SKHEP1_LIVER	RSPRY1--SPG7	28	16	RSPRY1	1315	chr16:57220363:+	SPG7	33453	chr16:89590414:+	ONLY_REF_SPLICE	YES	33	83	0.57	0.35	0.3336	0.1907	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SKHEP1_LIVER	0.35	0.57	0.5243	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	MT-ND4--MT-ND4L	3	98	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	NO	28	1	0.78	0.99	0.0357	1.1677	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKHEP1_LIVER	0.78	0.99	1.2034	FALSE	344	821	44	306	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-CO3--MT-ATP6	16	35	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	6	5	0.89	0.91	0.1907	0.417	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKHEP1_LIVER	0.89	0.91	0.6077	FALSE	189	492	56	216	0	FALSE	ACH-000361
SKHEP1_LIVER	RSPRY1--SPG7	18	23	RSPRY1	1649	chr16:57220697:+	SPG7	33453	chr16:89590414:+	ONLY_REF_SPLICE	YES	78	83	0.34	0.33	0.2145	0.2741	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SKHEP1_LIVER	0.33	0.34	0.4886	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	ARID4A--PSMA3	18	14	ARID4A	6968	chr14:58772830:+	PSMA3	38775	chr14:58730423:+	ONLY_REF_SPLICE	YES	8	508	0.8	0.06	0.2145	0.1668	LOCAL_REARRANGEMENT:+:[26373],ARID4A->AT-rich_interaction_domain_4A,Oncogene{Bushman},chr14:58765103-58840605:+,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	SKHEP1_LIVER	0.06	0.8	0.3813	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	RP11-123O10.4--GRIP1	19	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2264	0.0357	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKHEP1_LIVER	1	1	0.2621	FALSE	416	2512	207	587	0	FALSE	ACH-000361
SKHEP1_LIVER	ZNF654--HMGB2	19	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2264	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKHEP1_LIVER	1	1	0.2264	TRUE	0	0	0	518	0	FALSE	ACH-000361
SKHEP1_LIVER	ANPEP--MT-ND4L	18	2	ANPEP	16060	chr15:90328379:-	MT-ND4L	19321	chrM:10471:+	INCL_NON_REF_SPLICE	YES	979	0	0.02	1	0.2145	0.0238	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKHEP1_LIVER	0.02	1	0.2383	FALSE	0	1	0	16	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ND6--MT-TE	17	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2026	0.0357	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKHEP1_LIVER	1	1	0.2383	FALSE	499	1288	110	792	0	FALSE	ACH-000361
SKHEP1_LIVER	RSPRY1--SPG7	13	18	RSPRY1	1315	chr16:57220363:+	SPG7	33210	chr16:89590171:+	INCL_NON_REF_SPLICE	YES	33	78	0.48	0.28	0.1549	0.2145	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SKHEP1_LIVER	0.28	0.48	0.3694	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	MT-ND6--MT-TE	12	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.143	0.1549	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKHEP1_LIVER	0.96	1	0.2979	FALSE	499	1288	110	792	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-CO3--MT-ATP6	4	39	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	YES	6	0	0.88	1	0.0477	0.4647	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKHEP1_LIVER	0.88	1	0.5124	FALSE	189	492	56	216	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ND6--MT-TE	13	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1549	0.0357	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKHEP1_LIVER	1	1	0.1906	FALSE	499	1288	110	792	0	FALSE	ACH-000361
SKHEP1_LIVER	RSPRY1--SPG7	8	23	RSPRY1	1914	chr16:57220962:+	SPG7	33453	chr16:89590414:+	ONLY_REF_SPLICE	YES	71	83	0.3	0.27	0.0953	0.2741	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SKHEP1_LIVER	0.27	0.3	0.3694	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	RSPRY1--SPG7	6	27	RSPRY1	1649	chr16:57220697:+	SPG7	33210	chr16:89590171:+	INCL_NON_REF_SPLICE	YES	78	78	0.3	0.3	0.0715	0.3217	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SKHEP1_LIVER	0.3	0.3	0.3932	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	FAM192A--GPR114	11	6	FAM192A	10833	chr16:57197913:-	GPR114	19664	chr16:57597003:+	ONLY_REF_SPLICE	YES	200	0	0.08	1	0.1311	0.0715	FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A,GPR114->chr16:57576333-57625593:+	SKHEP1_LIVER	0.08	1	0.2026	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	C15orf57--CBX3	10	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	39	39	0.32	0.32	0.1192	0.0953	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKHEP1_LIVER	0.32	0.32	0.2145	TRUE	267	562	48	632	0	FALSE	ACH-000361
SKHEP1_LIVER	ARID4A--PSMA3	10	7	ARID4A	3587	chr14:58768408:+	PSMA3	38775	chr14:58730423:+	ONLY_REF_SPLICE	YES	19	508	0.47	0.03	0.1192	0.0834	LOCAL_REARRANGEMENT:+:[26373],ARID4A->AT-rich_interaction_domain_4A,Oncogene{Bushman},chr14:58765103-58840605:+,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	SKHEP1_LIVER	0.03	0.47	0.2026	TRUE	0	0	0	1	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ND6--MT-ND5	11	2	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	2784	1	0	0.1311	0.0238	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SKHEP1_LIVER	0	1	0.1549	FALSE	101	855	57	72	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ND4--MT-ND4L	3	33	MT-ND4	1024	chrM:10783:+	MT-ND4L	5471	chrM:10562:+	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.0357	0.3932	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKHEP1_LIVER	0.88	1	0.4289	FALSE	344	821	44	306	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ND6--MT-TE	8	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0953	0.1549	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKHEP1_LIVER	1	1	0.2502	FALSE	499	1288	110	792	0	FALSE	ACH-000361
SKHEP1_LIVER	RP11-680G10.1--GSE1	10	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.65	0.1192	0.0357	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKHEP1_LIVER	0.65	1	0.1549	TRUE	458	1351	185	561	0	FALSE	ACH-000361
SKHEP1_LIVER	HSP90AB1--MT-RNR2	10	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1192	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKHEP1_LIVER	1	1	0.1192	FALSE	13	9	0	364	0	FALSE	ACH-000361
SKHEP1_LIVER	CDH13--RP11-22H5.2	9	0	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1072	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	SKHEP1_LIVER	1	1	0.1072	FALSE	14	31	0	36	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ND6--MT-ND5	8	1	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	2	483	0.82	0.02	0.0953	0.0119	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SKHEP1_LIVER	0.02	0.82	0.1072	FALSE	101	855	57	72	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ND6--MT-TE	3	21	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0357	0.2502	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKHEP1_LIVER	0.96	1	0.2859	FALSE	499	1288	110	792	0	FALSE	ACH-000361
SKHEP1_LIVER	ACTN4--MT-CO1	7	3	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	1682	25731	0.01	0	0.0834	0.0357	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKHEP1_LIVER	0	0.01	0.1191	FALSE	0	0	0	30	0	FALSE	ACH-000361
SKHEP1_LIVER	RP11-680G10.1--GSE1	7	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	10	1	0.44	0.0834	0.0119	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKHEP1_LIVER	0.44	1	0.0953	TRUE	465	1949	224	605	0	FALSE	ACH-000361
SKHEP1_LIVER	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SKHEP1_LIVER	1	1	0.0834	FALSE	13	9	0	364	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ATP6--MT-CO1	6	4	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	14367	0	0	1	0.0715	0.0477	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKHEP1_LIVER	0	1	0.1192	FALSE	182	97	9	327	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0834	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKHEP1_LIVER	1	1	0.0834	FALSE	462	80	0	856	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ND6--MT-ND5	6	1	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	1479	1	0	0.0715	0.0119	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SKHEP1_LIVER	0	1	0.0834	FALSE	101	855	57	72	0	FALSE	ACH-000361
SKHEP1_LIVER	SERPINE1--MT-ND4	6	1	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	2904	16920	0	0	0.0715	0.0119	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SKHEP1_LIVER	0	0	0.0834	FALSE	1	0	0	29	0	FALSE	ACH-000361
SKHEP1_LIVER	TAGLN2--MT-ND5	6	1	TAGLN2	6046	chr1:159888579:-	MT-ND5	10456	chrM:13064:+	INCL_NON_REF_SPLICE	YES	1232	3628	0.01	0	0.0715	0.0119	TAGLN2->chr1:159887897-159895522:-,transgelin_2,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SKHEP1_LIVER	0	0.01	0.0834	FALSE	0	0	0	9	0	FALSE	ACH-000361
SKHEP1_LIVER	YBX3--MT-CO3	6	1	YBX3	1219	chr12:10875693:-	MT-CO3	20797	chrM:9412:+	INCL_NON_REF_SPLICE	YES	7	13446	0.5	0	0.0715	0.0119	YBX3->Y-box_binding_protein_3,chr12:10851683-10875911:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SKHEP1_LIVER	0	0.5	0.0834	FALSE	25	0	0	6	0	FALSE	ACH-000361
SKHEP1_LIVER	VIM--PPIA	6	0	VIM	2122	chr10:17271379:+	PPIA	12215	chr7:44836289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0	VIM->chr10:17270258-17279592:+,vimentin,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	SKHEP1_LIVER	1	1	0.0715	TRUE	0	0	0	6	0	TRUE	ACH-000361
SKHEP1_LIVER	ZNF654--HMGB2	6	0	ZNF654	1688	chr3:88188941:+	HMGB2	12525	chr4:174253314:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKHEP1_LIVER	1	1	0.0715	TRUE	0	0	0	518	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ND4--MT-ND4L	3	11	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	89	0	0.14	1	0.0357	0.1311	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKHEP1_LIVER	0.14	1	0.1668	FALSE	344	826	44	306	0	FALSE	ACH-000361
SKHEP1_LIVER	RP11-96H19.1--RP11-446N19.1	4	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.77	1	0.0477	0.0715	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKHEP1_LIVER	0.77	1	0.1192	FALSE	515	4851	409	746	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ATP6--MT-CO1	5	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	11657	25723	0	0	0.0596	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKHEP1_LIVER	0	0	0.0715	FALSE	183	104	9	328	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-CO3--MT-ATP6	3	9	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	6	1	0.67	0.92	0.0357	0.1072	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKHEP1_LIVER	0.67	0.92	0.1429	FALSE	189	492	56	216	0	FALSE	ACH-000361
SKHEP1_LIVER	VIM-AS1--THBS1	4	5	VIM-AS1	1552	chr10:17271433:-	THBS1	18630	chr15:39882162:+	INCL_NON_REF_SPLICE	YES	8466	4008	0	0	0.0477	0.0596	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	SKHEP1_LIVER	0	0	0.1073	TRUE	0	0	0	1	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-TA--MT-TC	4	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0477	0.0477	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKHEP1_LIVER	1	1	0.0954	FALSE	462	80	0	856	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ATP6--MT-CO1	3	7	MT-ATP6	1444	chrM:8970:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	11942	23579	0	0	0.0357	0.0834	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKHEP1_LIVER	0	0	0.1191	FALSE	183	104	9	328	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ND6--MT-TE	4	3	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0477	0.0357	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKHEP1_LIVER	0.88	1	0.0834	FALSE	499	1288	110	792	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ATP6--MT-CO1	4	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	11928	26144	0	0	0.0477	0.0238	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKHEP1_LIVER	0	0	0.0715	FALSE	183	104	9	328	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-CO3--MT-ATP6	4	2	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	7	0	0.46	1	0.0477	0.0238	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKHEP1_LIVER	0.46	1	0.0715	FALSE	189	492	56	216	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ATP6--MT-CO1	4	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	10994	23914	0	0	0.0477	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKHEP1_LIVER	0	0	0.0596	FALSE	183	104	9	328	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ATP6--MT-CO1	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11380	26115	0	0	0.0477	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKHEP1_LIVER	0	0	0.0596	FALSE	183	104	9	328	0	FALSE	ACH-000361
SKHEP1_LIVER	RSPRY1--SPG7	4	1	RSPRY1	1293	chr16:57220341:+	SPG7	33453	chr16:89590414:+	ONLY_REF_SPLICE	YES	3	83	0.62	0.06	0.0477	0.0119	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SKHEP1_LIVER	0.06	0.62	0.0596	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	MT-ND4--MT-ND4L	3	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.88	0.0357	0.0477	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKHEP1_LIVER	0.88	1	0.0834	FALSE	344	821	44	306	0	FALSE	ACH-000361
SKHEP1_LIVER	VIM-AS1--THBS1	3	4	VIM-AS1	1561	chr10:17271424:-	THBS1	18634	chr15:39882166:+	INCL_NON_REF_SPLICE	YES	8077	3969	0	0	0.0357	0.0477	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1	SKHEP1_LIVER	0	0	0.0834	FALSE	0	0	0	1	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ATP6--MT-CO1	3	3	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	14250	24106	0	0	0.0357	0.0357	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKHEP1_LIVER	0	0	0.0714	FALSE	183	104	9	328	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ATP6--MT-CO1	3	3	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	12098	24017	0	0	0.0357	0.0357	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKHEP1_LIVER	0	0	0.0714	FALSE	183	104	9	328	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ATP6--MT-CO1	3	3	MT-ATP6	1150	chrM:8676:+	MT-CO1	5195	chrM:6417:+	INCL_NON_REF_SPLICE	YES	13645	23451	0	0	0.0357	0.0357	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKHEP1_LIVER	0	0	0.0714	FALSE	183	104	9	328	0	FALSE	ACH-000361
SKHEP1_LIVER	RP4-594A5.1--PLCB1	3	2	RP4-594A5.1	1056	chr7:8343426:+	PLCB1	7951	chr20:8130941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0.0238	GTEx_FI:{Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Cervix_Uteri=[count:1=pct:12.5],Testis=[count:1=pct:1.0]},RP4-594A5.1->chr7:8343371-8380973:+,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	SKHEP1_LIVER	1	1	0.0595	TRUE	0	4	0	1	0	FALSE	ACH-000361
SKHEP1_LIVER	YBX3--MT-CO3	3	2	YBX3	1227	chr12:10875685:-	MT-CO3	20806	chrM:9421:+	INCL_NON_REF_SPLICE	YES	5	13589	0.5	0	0.0357	0.0238	YBX3->Y-box_binding_protein_3,chr12:10851683-10875911:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SKHEP1_LIVER	0	0.5	0.0595	FALSE	25	0	0	6	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ATP6--MT-CO1	3	1	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	11497	23665	0	0	0.0357	0.0119	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKHEP1_LIVER	0	0	0.0476	FALSE	183	104	9	328	0	FALSE	ACH-000361
SKHEP1_LIVER	MYH9--MT2A	3	1	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	1404	0	0	1	0.0357	0.0119	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	SKHEP1_LIVER	0	1	0.0476	FALSE	0	0	0	24	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SKHEP1_LIVER	1	1	0.0357	FALSE	189	492	56	216	0	FALSE	ACH-000361
SKHEP1_LIVER	MT-ND6--MT-ND5	3	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	SKHEP1_LIVER	1	1	0.0357	FALSE	101	855	57	72	0	FALSE	ACH-000361
SKHEP1_LIVER	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	3	0	0.73	1	0.0119	0.0834	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKHEP1_LIVER	0.73	1	0.0953	FALSE	275	511	55	178	0	FALSE	ACH-000361
SKHEP1_LIVER	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	3	0	0.73	1	0.0119	0.0834	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKHEP1_LIVER	0.73	1	0.0953	FALSE	407	2205	196	549	0	FALSE	ACH-000361
SKHEP1_LIVER	RP4-594A5.1--PLCB1	2	2	RP4-594A5.1	1056	chr7:8343426:+	PLCB1	10098	chr20:8608941:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0238	0.0238	GTEx_FI:{Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3],Cervix_Uteri=[count:1=pct:12.5],Testis=[count:1=pct:1.0]},RP4-594A5.1->chr7:8343371-8380973:+,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	SKHEP1_LIVER	0.8	1	0.0476	TRUE	3	6	0	1	0	FALSE	ACH-000361
SKHEP1_LIVER	PRR16--CTD-2334D19.1	2	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	30	0	0.09	1	0.0238	0.0119	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SKHEP1_LIVER	0.09	1	0.0357	FALSE	56	216	12	147	0	FALSE	ACH-000361
SKHEP1_LIVER	ADIPOR2--WNT5B	2	0	ADIPOR2	2331	chr12:1800379:+	WNT5B	26960	chr12:1740464:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	LOCAL_REARRANGEMENT:+:[41331],ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+,WNT5B->Wnt_family_member_5B,chr12:1639057-1756409:+	SKHEP1_LIVER	1	1	0.0238	TRUE	0	1	0	2	1	TRUE	ACH-000361
SKHEP1_LIVER	APP--BTG3	2	0	APP	20667	chr21:27326904:-	BTG3	34467	chr21:18981470:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,BTG3->BTG_family_member_3,chr21:18965971-18985265:-	SKHEP1_LIVER	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	F3--SPG7	2	0	F3	1264	chr1:95007093:-	SPG7	29909	chr16:89611056:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Head-Neck=2,Breast=1},F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	SKHEP1_LIVER	1	1	0.0238	TRUE	0	0	0	8	0	TRUE	ACH-000361
SKHEP1_LIVER	LPP--RPL39L	2	0	LPP	1080	chr3:187871151:+	RPL39L	57575	chr3:186845850:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Artery_-_Coronary=1},LPP->LIM_domain_containing_preferred_translocation_partner_in_lipoma,Oncogene{Bushman},chr3:187871072-188608460:+,RPL39L->chr3:186838736-186898696:-,ribosomal_protein_L39_like	SKHEP1_LIVER	1	1	0.0238	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	YWHAE--CRK	2	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0238	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SKHEP1_LIVER	1	1	0.0238	TRUE	6	50	7	115	0	FALSE	ACH-000361
SKHEP1_LIVER	RP11-114H23.1--RP11-114H23.2	1	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0119	0.0357	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SKHEP1_LIVER	1	1	0.0476	FALSE	81	155	12	160	0	FALSE	ACH-000361
SKHEP1_LIVER	RSPRY1--PIEZO1	1	3	RSPRY1	1306	chr16:57220354:+	PIEZO1	24716	chr16:88815887:-	ONLY_REF_SPLICE	NO	15	13	0.21	0.24	0.0119	0.0357	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1	SKHEP1_LIVER	0.21	0.24	0.0476	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	RSPRY1--PIEZO1	1	3	RSPRY1	1649	chr16:57220697:+	PIEZO1	24716	chr16:88815887:-	ONLY_REF_SPLICE	NO	78	13	0.05	0.24	0.0119	0.0357	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1	SKHEP1_LIVER	0.05	0.24	0.0476	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	RSPRY1--PIEZO1	1	3	RSPRY1	1315	chr16:57220363:+	PIEZO1	24716	chr16:88815887:-	ONLY_REF_SPLICE	NO	33	13	0.11	0.24	0.0119	0.0357	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,PIEZO1->chr16:88781751-88851619:-,piezo_type_mechanosensitive_ion_channel_component_1	SKHEP1_LIVER	0.11	0.24	0.0476	TRUE	0	0	0	1	0	TRUE	ACH-000361
SKHEP1_LIVER	EEF2--RPS11	1	1	EEF2	6662	chr19:3979806:-	RPS11	14088	chr19:50000451:+	ONLY_REF_SPLICE	YES	3263	4	0	0.33	0.0119	0.0119	GTEx&tcga_normals:1/3694=0.03%,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS11->chr19:49999622-50002946:+,ribosomal_protein_S11	SKHEP1_LIVER	0	0.33	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000361
SKHEP1_LIVER	YWHAE--GNAS	1	1	YWHAE	1332	chr17:1303341:-	GNAS	30056	chr20:57470667:+	ONLY_REF_SPLICE	YES	2531	663	0	0	0.0119	0.0119	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Colon_-_Transverse=1},YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SKHEP1_LIVER	0	0	0.0238	FALSE	0	6	0	6	1	FALSE	ACH-000361
SAOS2_BONE	TIMM23B--LINC00843	128	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2679	0.3368	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SAOS2_BONE	1	1	1.6047	TRUE	508	994	45	981	0	FALSE	ACH-000410
SAOS2_BONE	TIMM23--RP11-464F9.1	74	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	126	0	0.38	1	0.733	0.0198	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SAOS2_BONE	0.38	1	0.7528	TRUE	519	3926	326	965	0	FALSE	ACH-000410
SAOS2_BONE	ZNF654--HMGB2	57	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5646	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SAOS2_BONE	1	1	0.5646	TRUE	0	0	0	518	0	FALSE	ACH-000410
SAOS2_BONE	LHFP--LINC00462	51	13	LHFP	3205	chr13:40174969:-	LINC00462	9697	chr13:49151995:-	ONLY_REF_SPLICE	YES	95	0	0.4	1	0.5052	0.1288	LHFP->Oncogene{Bushman},chr13:39917029-40177665:-,lipoma_HMGIC_fusion_partner,LINC00462->chr13:49151110-49152224:-,long_intergenic_non-protein_coding_RNA_462	SAOS2_BONE	0.4	1	0.634	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	DIP2C--MLTK	43	33	DIP2C	1250	chr10:735434:-	MLTK	52423	chr2:173955726:+	ONLY_REF_SPLICE	YES	16	69	0.83	0.52	0.4259	0.3269	DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,MLTK->chr2:173940163-174132738:+	SAOS2_BONE	0.52	0.83	0.7528	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	MIPEPP3--ABHD12	49	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4854	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	SAOS2_BONE	1	1	0.4854	TRUE	64	202	9	44	0	FALSE	ACH-000410
SAOS2_BONE	OXR1--ANGPT1	42	23	OXR1	9883	chr8:107670413:+	ANGPT1	36681	chr8:108359325:-	ONLY_REF_SPLICE	YES	55	1	0.54	0.98	0.416	0.2278	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,ANGPT1->angiopoietin_1,chr8:108261721-108510283:-	SAOS2_BONE	0.54	0.98	0.6438	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	DDT--HMOX1	13	48	DDT	4753	chr22:24315957:-	HMOX1	15712	chr22:35789461:+	ONLY_REF_SPLICE	YES	568	43	0.1	0.59	0.1288	0.4755	DDT->D-dopachrome_tautomerase,chr22:24313554-24322660:-,HMOX1->chr22:35776354-35790207:+,heme_oxygenase_1	SAOS2_BONE	0.1	0.59	0.6043	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	MSI2--RP11-429O1.1	21	5	MSI2	25423	chr17:55674311:+	RP11-429O1.1	50357	chr17:50609892:+	ONLY_REF_SPLICE	YES	69	0	0.27	1	0.208	0.0495	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,RP11-429O1.1->chr17:50467875-50613061:+	SAOS2_BONE	0.27	1	0.2575	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	UBR4--HP1BP3	21	5	UBR4	49221	chr1:19464501:-	HP1BP3	98737	chr1:21107033:-	ONLY_REF_SPLICE	YES	194	259	0.12	0.09	0.208	0.0495	UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	SAOS2_BONE	0.09	0.12	0.2575	TRUE	0	0	0	1	0	FALSE	ACH-000410
SAOS2_BONE	RP11-152P17.2--RSPO2	21	2	RP11-152P17.2	1144	chr8:107072609:-	RSPO2	20987	chr8:109001472:-	ONLY_REF_SPLICE	YES	8	9	0.74	0.72	0.208	0.0198	RP11-152P17.2->chr8:106792474-107072752:-,RSPO2->Oncogene{Bushman},R-spondin_2,chr8:108911544-109095913:-	SAOS2_BONE	0.72	0.74	0.2278	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	MT-ND6--MT-TE	20	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1981	0.0396	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SAOS2_BONE	1	1	0.2377	FALSE	499	1288	110	792	0	FALSE	ACH-000410
SAOS2_BONE	MT-TA--MT-TC	20	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1981	0.0099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SAOS2_BONE	1	1	0.208	FALSE	462	80	0	856	0	FALSE	ACH-000410
SAOS2_BONE	GLIPR1--RHD	15	17	GLIPR1	11501	chr12:75897304:+	RHD	16134	chr1:25611064:+	INCL_NON_REF_SPLICE	YES	7	0	0.82	1	0.1486	0.1684	GLIPR1->GLI_pathogenesis_related_1,chr12:75874460-75897633:+,RHD->Rh_blood_group_D_antigen,chr1:25598884-25656936:+	SAOS2_BONE	0.82	1	0.317	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	R3HDM2--RP11-654D12.2	18	2	R3HDM2	2356	chr12:57789532:-	RP11-654D12.2	34860	chr12:90314844:+	ONLY_REF_SPLICE	YES	3	0	0.87	1	0.1783	0.0198	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,RP11-654D12.2->chr12:90276442-90383066:+	SAOS2_BONE	0.87	1	0.1981	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	GLIPR1--RHD	17	4	GLIPR1	6697	chr12:75892500:+	RHD	16134	chr1:25611064:+	ONLY_REF_SPLICE	YES	278	0	0.07	1	0.1684	0.0396	GLIPR1->GLI_pathogenesis_related_1,chr12:75874460-75897633:+,RHD->Rh_blood_group_D_antigen,chr1:25598884-25656936:+	SAOS2_BONE	0.07	1	0.208	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	RP11-152P17.2--RSPO2	17	3	RP11-152P17.2	1144	chr8:107072609:-	RSPO2	16329	chr8:109095035:-	ONLY_REF_SPLICE	YES	8	1	0.71	0.95	0.1684	0.0297	RP11-152P17.2->chr8:106792474-107072752:-,RSPO2->Oncogene{Bushman},R-spondin_2,chr8:108911544-109095913:-	SAOS2_BONE	0.71	0.95	0.1981	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	MT-ND6--MT-TE	15	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1486	0.0594	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SAOS2_BONE	1	1	0.208	FALSE	499	1288	110	792	0	FALSE	ACH-000410
SAOS2_BONE	COL12A1--COL1A1	16	1	COL12A1	59327	chr6:75797359:-	COL1A1	69301	chr17:48275118:-	INCL_NON_REF_SPLICE	YES	406	4008	0.04	0	0.1585	0.0099	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,HGNC_GENEFAM,COL12A1->chr6:75794042-75915767:-,collagen_type_XII_alpha_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	SAOS2_BONE	0	0.04	0.1684	TRUE	0	0	0	4	0	FALSE	ACH-000410
SAOS2_BONE	RP11-444D3.1--SOX5	15	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1486	0.0099	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SAOS2_BONE	1	1	0.1585	TRUE	477	1352	189	275	0	FALSE	ACH-000410
SAOS2_BONE	LARP1B--TBCK	14	2	LARP1B	18863	chr4:129100667:+	TBCK	39811	chr4:107183369:-	ONLY_REF_SPLICE	YES	7	7	0.7	0.7	0.1387	0.0198	LARP1B->La_ribonucleoprotein_domain_family_member_1B,chr4:128982423-129144086:+,TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-	SAOS2_BONE	0.7	0.7	0.1585	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	RP11-640M9.1--SEC22B	12	7	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	YES	19	209	0.5	0.08	0.1189	0.0693	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SAOS2_BONE	0.08	0.5	0.1882	TRUE	20	16	6	14	0	FALSE	ACH-000410
SAOS2_BONE	COL1A1--NPM1	13	1	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	3808	1	0	0.93	0.1288	0.0099	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	SAOS2_BONE	0	0.93	0.1387	TRUE	0	0	0	31	0	FALSE	ACH-000410
SAOS2_BONE	DDT--HMOX1	5	28	DDT	4214	chr22:24316496:-	HMOX1	15712	chr22:35789461:+	ONLY_REF_SPLICE	YES	740	43	0.04	0.43	0.0495	0.2774	DDT->D-dopachrome_tautomerase,chr22:24313554-24322660:-,HMOX1->chr22:35776354-35790207:+,heme_oxygenase_1	SAOS2_BONE	0.04	0.43	0.3269	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	RP11-120D5.1--MID1	11	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	118	0.93	0.11	0.109	0.0297	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SAOS2_BONE	0.11	0.93	0.1387	FALSE	16	356	14	466	0	FALSE	ACH-000410
SAOS2_BONE	RP11-640M9.1--SEC22B	9	9	RP11-640M9.1	3158	chr1:144519813:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	YES	27	209	0.4	0.08	0.0891	0.0891	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SAOS2_BONE	0.08	0.4	0.1782	TRUE	20	16	6	14	0	FALSE	ACH-000410
SAOS2_BONE	GLIPR1--RHD	8	8	GLIPR1	6842	chr12:75892645:+	RHD	16134	chr1:25611064:+	INCL_NON_REF_SPLICE	YES	259	0	0.06	1	0.0792	0.0792	GLIPR1->GLI_pathogenesis_related_1,chr12:75874460-75897633:+,RHD->Rh_blood_group_D_antigen,chr1:25598884-25656936:+	SAOS2_BONE	0.06	1	0.1584	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	NRIP1--AF127936.7	9	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.65	1	0.0891	0.0198	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SAOS2_BONE	0.65	1	0.1089	FALSE	292	1546	117	613	0	FALSE	ACH-000410
SAOS2_BONE	TBCK--PHF20	9	2	TBCK	7962	chr4:107216251:-	PHF20	65707	chr20:34487292:+	ONLY_REF_SPLICE	YES	6	0	0.65	1	0.0891	0.0198	TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	SAOS2_BONE	0.65	1	0.1089	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	MT-ND6--MT-TE	7	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0693	0.0891	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SAOS2_BONE	1	1	0.1584	FALSE	499	1288	110	792	0	FALSE	ACH-000410
SAOS2_BONE	MAF--RP11-679B19.2	8	4	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.92	0.0792	0.0396	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	SAOS2_BONE	0.92	1	0.1188	TRUE	48	25	3	38	0	FALSE	ACH-000410
SAOS2_BONE	RP11-680G10.1--GSE1	7	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	1	21	0.9	0.3	0.0693	0.0198	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SAOS2_BONE	0.3	0.9	0.0891	TRUE	458	1351	185	561	0	FALSE	ACH-000410
SAOS2_BONE	OXR1--ANGPT1	5	8	OXR1	9783	chr8:107670313:+	ANGPT1	36681	chr8:108359325:-	ONLY_REF_SPLICE	YES	62	1	0.17	0.93	0.0495	0.0792	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,ANGPT1->angiopoietin_1,chr8:108261721-108510283:-	SAOS2_BONE	0.17	0.93	0.1287	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	OMA1--RP11-91K9.1	6	2	OMA1	10671	chr1:58971732:-	RP11-91K9.1	22869	chr3:177613401:+	ONLY_REF_SPLICE	YES	23	0	0.26	1	0.0594	0.0198	OMA1->OMA1_zinc_metallopeptidase,chr1:58881056-59012474:-,RP11-91K9.1->chr3:177534653-177617012:+	SAOS2_BONE	0.26	1	0.0792	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	NRIP1--AF127936.7	5	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.5	1	0.0495	0.0495	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SAOS2_BONE	0.5	1	0.099	FALSE	125	705	46	456	0	FALSE	ACH-000410
SAOS2_BONE	MT-TA--MT-TC	5	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0.0099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SAOS2_BONE	1	1	0.0594	FALSE	462	80	0	856	0	FALSE	ACH-000410
SAOS2_BONE	MT-ND6--MT-TE	3	8	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0.0792	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SAOS2_BONE	1	1	0.1089	FALSE	499	1288	110	792	0	FALSE	ACH-000410
SAOS2_BONE	RP11-96H19.1--RP11-446N19.1	5	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0495	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SAOS2_BONE	1	1	0.0495	FALSE	407	2205	196	549	0	FALSE	ACH-000410
SAOS2_BONE	RP11-640M9.1--SEC22B	3	7	RP11-640M9.1	2197	chr1:144520774:-	SEC22B	25754	chr1:145103908:+	ONLY_REF_SPLICE	YES	19	245	0.34	0.04	0.0297	0.0693	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SAOS2_BONE	0.04	0.34	0.099	TRUE	14	18	7	11	0	FALSE	ACH-000410
SAOS2_BONE	EIF4G3--RHD	4	2	EIF4G3	21194	chr1:21267984:-	RHD	62961	chr1:25643491:+	ONLY_REF_SPLICE	YES	115	7	0.05	0.46	0.0396	0.0198	EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3,RHD->Rh_blood_group_D_antigen,chr1:25598884-25656936:+	SAOS2_BONE	0.05	0.46	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	PDPR--ADAT1	4	2	PDPR	6367	chr16:70163025:+	ADAT1	32504	chr16:75652538:-	ONLY_REF_SPLICE	YES	16	28	0.27	0.18	0.0396	0.0198	PDPR->chr16:70147529-70195203:+,pyruvate_dehydrogenase_phosphatase_regulatory_subunit,ADAT1->adenosine_deaminase,_tRNA_specific_1,chr16:75630879-75657198:-	SAOS2_BONE	0.18	0.27	0.0594	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	RP1-34H18.1--NAV3	4	2	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0396	0.0198	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	SAOS2_BONE	0.86	1	0.0594	TRUE	254	575	65	124	0	FALSE	ACH-000410
SAOS2_BONE	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	1	89	0.86	0.06	0.0396	0.0198	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SAOS2_BONE	0.06	0.86	0.0594	TRUE	465	1949	224	605	0	FALSE	ACH-000410
SAOS2_BONE	CTD-2251F13.1--PRKD1	4	0	CTD-2251F13.1	1069	chr14:30766181:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	SAOS2_BONE	1	1	0.0396	TRUE	0	3	0	9	3	TRUE	ACH-000410
SAOS2_BONE	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SAOS2_BONE	1	1	0.0396	FALSE	499	1288	110	792	0	FALSE	ACH-000410
SAOS2_BONE	RP11-96H19.1--RP11-446N19.1	4	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0396	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SAOS2_BONE	1	1	0.0396	FALSE	515	4851	409	746	0	FALSE	ACH-000410
SAOS2_BONE	COL1A1--RAD23B	3	2	COL1A1	12372	chr17:48267403:-	RAD23B	27171	chr9:110068766:+	INCL_NON_REF_SPLICE	YES	4479	491	0	0.01	0.0297	0.0198	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,RAD23B->Oncogene{Bushman},RAD23_homolog_B,_nucleotide_excision_repair_protein,chr9:110045418-110094475:+	SAOS2_BONE	0	0.01	0.0495	FALSE	0	0	0	4	0	FALSE	ACH-000410
SAOS2_BONE	NRIP1--AF127936.7	2	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	16	0	0.33	1	0.0198	0.0594	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SAOS2_BONE	0.33	1	0.0792	FALSE	164	806	69	479	0	FALSE	ACH-000410
SAOS2_BONE	PRR16--CTD-2334D19.1	3	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0297	0.0099	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SAOS2_BONE	0.5	1	0.0396	FALSE	56	216	12	147	0	FALSE	ACH-000410
SAOS2_BONE	DIP2C--MLTK	1	8	DIP2C	1250	chr10:735434:-	MLTK	55014	chr2:174034533:+	ONLY_REF_SPLICE	YES	16	79	0.36	0.1	0.0099	0.0792	DIP2C->Oncogene{Bushman},chr10:320130-735683:-,disco_interacting_protein_2_homolog_C,MLTK->chr2:173940163-174132738:+	SAOS2_BONE	0.1	0.36	0.0891	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	EIF1--RPL5	3	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	SAOS2_BONE	1	1	0.0297	TRUE	0	0	0	39	0	FALSE	ACH-000410
SAOS2_BONE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SAOS2_BONE	1	1	0.0297	FALSE	462	80	0	856	0	FALSE	ACH-000410
SAOS2_BONE	OXR1--ANGPT1	3	0	OXR1	4606	chr8:107531367:+	ANGPT1	36681	chr8:108359325:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,ANGPT1->angiopoietin_1,chr8:108261721-108510283:-	SAOS2_BONE	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	RPS6KA1--FABP3	3	0	RPS6KA1	8219	chr1:26873761:+	FABP3	28684	chr1:31842404:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	RPS6KA1->Oncogene{Bushman},chr1:26856252-26901521:+,ribosomal_protein_S6_kinase_A1,FABP3->Oncogene{Bushman},chr1:31838472-31849697:-,fatty_acid_binding_protein_3	SAOS2_BONE	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	SLC1A5--MT-ND4L	3	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SAOS2_BONE	1	1	0.0297	FALSE	0	0	0	189	0	FALSE	ACH-000410
SAOS2_BONE	TBC1D15--EPHB2	3	0	TBC1D15	1105	chr12:72233591:+	EPHB2	32930	chr1:23107914:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	TBC1D15->TBC1_domain_family_member_15,chr12:72233487-72320629:+,EPHB2->EPH_receptor_B2,chr1:23037332-23241818:+	SAOS2_BONE	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	UBR4--HP1BP3	2	3	UBR4	49221	chr1:19464501:-	HP1BP3	100466	chr1:21103243:-	ONLY_REF_SPLICE	YES	194	424	0.03	0.01	0.0198	0.0297	UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	SAOS2_BONE	0.01	0.03	0.0495	FALSE	0	0	0	1	0	FALSE	ACH-000410
SAOS2_BONE	CPSF6--C9orf3	2	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	182	144	0.02	0.02	0.0198	0.0099	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SAOS2_BONE	0.02	0.02	0.0297	TRUE	53	99	2	44	0	FALSE	ACH-000410
SAOS2_BONE	EIF4G3--RHD	2	1	EIF4G3	21194	chr1:21267984:-	RHD	65115	chr1:25655389:+	ONLY_REF_SPLICE	YES	115	5	0.03	0.38	0.0198	0.0099	EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3,RHD->Rh_blood_group_D_antigen,chr1:25598884-25656936:+	SAOS2_BONE	0.03	0.38	0.0297	TRUE	0	0	0	1	0	FALSE	ACH-000410
SAOS2_BONE	CHSY1--CAPZB	2	0	CHSY1	4362	chr15:101775287:-	CAPZB	19882	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CHSY1->chondroitin_sulfate_synthase_1,chr15:101715928-101792137:-,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	SAOS2_BONE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	SAOS2_BONE	1	1	0.0198	TRUE	0	1	0	7	1	TRUE	ACH-000410
SAOS2_BONE	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	SAOS2_BONE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	12223	chr14:30660656:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	SAOS2_BONE	1	1	0.0198	TRUE	0	0	0	4	0	TRUE	ACH-000410
SAOS2_BONE	EIF4G3--RHD	2	0	EIF4G3	18245	chr1:21295967:-	RHD	62961	chr1:25643491:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3,RHD->Rh_blood_group_D_antigen,chr1:25598884-25656936:+	SAOS2_BONE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	RALY--CHMP4B	2	0	RALY	3636	chr20:32619410:+	CHMP4B	18941	chr20:32436273:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1},RALY->RALY_heterogeneous_nuclear_ribonucleoprotein,chr20:32581452-32696114:+,CHMP4B->charged_multivesicular_body_protein_4B,chr20:32399110-32442172:+	SAOS2_BONE	1	1	0.0198	TRUE	0	1	0	1	1	TRUE	ACH-000410
SAOS2_BONE	RP11-141M1.3--STARD13	2	0	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SAOS2_BONE	1	1	0.0198	FALSE	141	264	50	91	0	FALSE	ACH-000410
SAOS2_BONE	RP11-152P17.2--RSPO2	2	0	RP11-152P17.2	1144	chr8:107072609:-	RSPO2	22176	chr8:108973045:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	RP11-152P17.2->chr8:106792474-107072752:-,RSPO2->Oncogene{Bushman},R-spondin_2,chr8:108911544-109095913:-	SAOS2_BONE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	SAOS2_BONE	1	1	0.0198	FALSE	46	201	11	112	0	FALSE	ACH-000410
SAOS2_BONE	RP11-1L12.3--SLC5A12	2	0	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	SAOS2_BONE	1	1	0.0198	TRUE	3	101	0	60	0	FALSE	ACH-000410
SAOS2_BONE	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SAOS2_BONE	1	1	0.0198	FALSE	467	2173	244	435	0	FALSE	ACH-000410
SAOS2_BONE	MSI2--RP11-429O1.1	1	3	MSI2	25423	chr17:55674311:+	RP11-429O1.1	51420	chr17:50612093:+	ONLY_REF_SPLICE	YES	69	1	0.05	0.8	0.0099	0.0297	MSI2->Oncogene{Bushman},chr17:55333212-55762046:+,musashi_RNA_binding_protein_2,RP11-429O1.1->chr17:50467875-50613061:+	SAOS2_BONE	0.05	0.8	0.0396	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	UBR4--HP1BP3	1	3	UBR4	49221	chr1:19464501:-	HP1BP3	99366	chr1:21106404:-	ONLY_REF_SPLICE	YES	194	352	0.02	0.01	0.0099	0.0297	UBR4->chr1:19401000-19536770:-,ubiquitin_protein_ligase_E3_component_n-recognin_4,HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3	SAOS2_BONE	0.01	0.02	0.0396	FALSE	0	0	0	1	0	FALSE	ACH-000410
SAOS2_BONE	GLIPR1--RHD	1	2	GLIPR1	6697	chr12:75892500:+	RHD	17321	chr1:25617132:+	ONLY_REF_SPLICE	YES	278	12	0.01	0.2	0.0099	0.0198	GLIPR1->GLI_pathogenesis_related_1,chr12:75874460-75897633:+,RHD->Rh_blood_group_D_antigen,chr1:25598884-25656936:+	SAOS2_BONE	0.01	0.2	0.0297	FALSE	0	0	0	1	0	FALSE	ACH-000410
SAOS2_BONE	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	16	1	0.16	0.75	0.0099	0.0198	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SAOS2_BONE	0.16	0.75	0.0297	FALSE	8	57	1	47	0	FALSE	ACH-000410
SAOS2_BONE	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	118	1	0.02	0.0099	0.0198	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SAOS2_BONE	0.02	1	0.0297	FALSE	0	48	1	163	0	FALSE	ACH-000410
SAOS2_BONE	CADM1--NNMT	1	1	CADM1	15113	chr11:115080294:-	NNMT	39591	chr11:114182767:+	ONLY_REF_SPLICE	YES	201	171	0.01	0.01	0.0099	0.0099	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},CADM1->cell_adhesion_molecule_1,chr11:115039938-115375675:-,NNMT->Oncogene{Bushman},chr11:114128509-114184007:+,nicotinamide_N-methyltransferase	SAOS2_BONE	0.01	0.01	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000410
SAOS2_BONE	NTM--ENC1	1	1	NTM	1411	chr11:131240783:+	ENC1	32357	chr5:73932323:-	ONLY_REF_SPLICE	YES	372	216	0.01	0.01	0.0099	0.0099	NTM->chr11:131240373-132206716:+,neurotrimin,ENC1->Oncogene{Bushman},chr5:73923234-73937249:-,ectodermal-neural_cortex_1	SAOS2_BONE	0.01	0.01	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000410
SAOS2_BONE	PICALM--SYTL2	1	1	PICALM	19502	chr11:85692172:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	401	11	0	0.15	0.0099	0.0099	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	SAOS2_BONE	0	0.15	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000410
SAOS2_BONE	PSMC2--DNAJC2	1	1	PSMC2	7162	chr7:103002535:+	DNAJC2	18959	chr7:102978258:-	ONLY_REF_SPLICE	YES	452	197	0	0.01	0.0099	0.0099	NEIGHBORS_OVERLAP:+:-:[619],PSMC2->chr7:102984701-103009842:+,proteasome_26S_subunit,_ATPase_2,DNAJC2->DnaJ_heat_shock_protein_family_(Hsp40)_member_C2,chr7:102952921-102985320:-	SAOS2_BONE	0	0.01	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000410
SAOS2_BONE	RDH11--RPL10	1	1	RDH11	2800	chr14:68159155:-	RPL10	17065	chrX:153628144:+	ONLY_REF_SPLICE	YES	256	3096	0.01	0	0.0099	0.0099	RDH11->chr14:68143518-68162531:-,retinol_dehydrogenase_11_(all-trans/9-cis/11-cis),RPL10->Oncogene{Bushman},chrX:153618315-153637504:+,ribosomal_protein_L10	SAOS2_BONE	0	0.01	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000410
SAOS2_BONE	TBCK--PHF20	1	1	TBCK	7962	chr4:107216251:-	PHF20	66986	chr20:34501171:+	ONLY_REF_SPLICE	YES	6	4	0.25	0.33	0.0099	0.0099	TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	SAOS2_BONE	0.25	0.33	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000410
SAOS2_BONE	VAPB--GNAS	1	1	VAPB	3372	chr20:56993419:+	GNAS	36861	chr20:57470667:+	ONLY_REF_SPLICE	NO	99	786	0.02	0	0.0099	0.0099	VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SAOS2_BONE	0	0.02	0.0198	FALSE	0	5	0	4	0	FALSE	ACH-000410
MDAPCA2B_PROSTATE	TRA2B--EHHADH	194	72	TRA2B	16076	chr3:185637225:-	EHHADH	26108	chr3:184966305:-	ONLY_REF_SPLICE	YES	162	0	0.62	1	2.8264	1.049	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),EHHADH->chr3:184908412-184999778:-,enoyl-CoA,_hydratase/3-hydroxyacyl_CoA_dehydrogenase	MDAPCA2B_PROSTATE	0.62	1	3.8754	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	96	38	TTC6	2242	chr14:38075947:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	YES	74	62	0.64	0.68	1.3986	0.5536	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.64	0.68	1.9522	TRUE	0	13	0	3	11	TRUE	ACH-000952
MDAPCA2B_PROSTATE	RP11-1319K7.1--OCLN	81	56	RP11-1319K7.1	12960	chr5:69394512:-	OCLN	23178	chr5:68830521:+	ONLY_REF_SPLICE	YES	38	57	0.78	0.71	1.1801	0.8159	GTEx_FI:{Blood=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Breast=[count:2=pct:1.8],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Spleen=[count:1=pct:0.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3]},RP11-1319K7.1->chr5:69390202-69424261:-,OCLN->chr5:68788119-68853931:+,occludin	MDAPCA2B_PROSTATE	0.71	0.78	1.996	TRUE	18	3	1	7	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	TIMM23B--LINC00843	70	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0198	0.3642	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MDAPCA2B_PROSTATE	1	1	1.384	TRUE	508	994	45	981	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	59	55	TTC6	2242	chr14:38075947:+	MIPOL1	73587	chr14:37838722:+	ONLY_REF_SPLICE	YES	74	31	0.61	0.79	0.8596	0.8013	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.61	0.79	1.6609	TRUE	0	3	0	4	3	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TIMM23--RP11-592B15.3	64	18	TIMM23	6952	chr10:51606988:-	RP11-592B15.3	21430	chr10:51262177:-	ONLY_REF_SPLICE	YES	256	10	0.24	0.89	0.9324	0.2622	GTEx_FI:{Stomach=[count:2=pct:2.2],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Nerve=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Breast=[count:1=pct:0.9],Muscle=[count:1=pct:0.4]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-592B15.3->chr10:51253146-51371338:-	MDAPCA2B_PROSTATE	0.24	0.89	1.1946	TRUE	8	39	3	4	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	NIPA2--POLA1	50	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7285	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	MDAPCA2B_PROSTATE	1	1	0.7285	TRUE	46	1352	75	139	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	22	58	TTC6	5307	chr14:38092208:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	YES	9	62	0.9	0.56	0.3205	0.845	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.56	0.9	1.1655	TRUE	0	2	0	1	1	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	22	43	TTC6	2242	chr14:38075947:+	MIPOL1	77335	chr14:37892060:+	ONLY_REF_SPLICE	YES	74	46	0.47	0.59	0.3205	0.6265	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.47	0.59	0.947	TRUE	0	4	0	4	2	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	27	11	TTC6	2242	chr14:38075947:+	MIPOL1	90133	chr14:38016110:+	ONLY_REF_SPLICE	YES	74	105	0.34	0.27	0.3934	0.1603	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.27	0.34	0.5537	TRUE	0	9	0	2	8	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	17	37	TTC6	1162	chr14:38065213:+	MIPOL1	61096	chr14:37716308:+	ONLY_REF_SPLICE	YES	48	26	0.53	0.68	0.2477	0.5391	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.53	0.68	0.7868	TRUE	0	0	0	2	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	20	22	TTC6	1162	chr14:38065213:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	YES	48	62	0.47	0.4	0.2914	0.3205	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.4	0.47	0.6119	TRUE	0	9	0	5	8	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	16	21	TTC6	5307	chr14:38092208:+	MIPOL1	90133	chr14:38016110:+	ONLY_REF_SPLICE	YES	9	105	0.8	0.26	0.2331	0.306	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.26	0.8	0.5391	TRUE	0	4	0	2	3	TRUE	ACH-000952
MDAPCA2B_PROSTATE	ZNF654--HMGB2	21	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.306	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MDAPCA2B_PROSTATE	1	1	0.306	TRUE	0	0	0	518	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	C8orf31--LY6E	16	15	C8orf31	3373	chr8:144124679:+	LY6E	16452	chr8:144102300:+	ONLY_REF_SPLICE	YES	0	95	1	0.25	0.2331	0.2185	LOCAL_REARRANGEMENT:+:[15377],C8orf31->chr8:144120626-144141359:+,chromosome_8_open_reading_frame_31,LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E	MDAPCA2B_PROSTATE	0.25	1	0.4516	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	RP11-314O13.1--CDYL2	15	4	RP11-314O13.1	3268	chr16:80874016:-	CDYL2	13750	chr16:80719026:-	ONLY_REF_SPLICE	YES	35	43	0.35	0.31	0.2185	0.0583	NEIGHBORS[24406],RP11-314O13.1->chr16:80862632-80926492:-,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	MDAPCA2B_PROSTATE	0.31	0.35	0.2768	FALSE	0	0	0	4	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	MIPEPP3--ABHD12	13	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1894	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	MDAPCA2B_PROSTATE	1	1	0.1894	TRUE	64	202	9	44	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	5	31	TTC6	1162	chr14:38065213:+	MIPOL1	73587	chr14:37838722:+	ONLY_REF_SPLICE	YES	48	31	0.43	0.54	0.0728	0.4516	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.43	0.54	0.5244	TRUE	0	3	0	4	2	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	1	43	TTC6	2242	chr14:38075947:+	MIPOL1	76296	chr14:37866181:+	ONLY_REF_SPLICE	YES	74	52	0.37	0.46	0.0146	0.6265	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.37	0.46	0.6411	TRUE	0	3	0	1	1	TRUE	ACH-000952
MDAPCA2B_PROSTATE	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1603	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MDAPCA2B_PROSTATE	1	1	0.1603	TRUE	0	0	0	434	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	1	37	TTC6	1162	chr14:38065213:+	MIPOL1	58837	chr14:37696931:+	ONLY_REF_SPLICE	YES	48	20	0.44	0.66	0.0146	0.5391	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.44	0.66	0.5537	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	2	32	TTC6	1162	chr14:38065213:+	MIPOL1	63976	chr14:37736143:+	ONLY_REF_SPLICE	YES	48	35	0.41	0.49	0.0291	0.4662	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.41	0.49	0.4953	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	RP11-1319K7.1--OCLN	5	15	RP11-1319K7.1	11795	chr5:69396543:-	OCLN	23178	chr5:68830521:+	ONLY_REF_SPLICE	YES	56	57	0.26	0.26	0.0728	0.2185	GTEx_FI:{Blood=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Breast=[count:2=pct:1.8],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Spleen=[count:1=pct:0.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3]},RP11-1319K7.1->chr5:69390202-69424261:-,OCLN->chr5:68788119-68853931:+,occludin	MDAPCA2B_PROSTATE	0.26	0.26	0.2913	TRUE	5	2	0	4	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	KMT2C--RP11-328J2.1	7	5	KMT2C	3611	chr7:152027686:-	RP11-328J2.1	75926	chr7:119440928:-	ONLY_REF_SPLICE	YES	11	0	0.52	1	0.102	0.0728	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,RP11-328J2.1->chr7:119344610-119547429:-	MDAPCA2B_PROSTATE	0.52	1	0.1748	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	AC010547.9--SLC26A8	5	11	AC010547.9	5314	chr16:71512131:-	SLC26A8	37797	chr6:35912117:-	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.0728	0.1603	AC010547.9->chr16:71481503-71523214:-,SLC26A8->chr6:35911291-35992645:-,solute_carrier_family_26_member_8	MDAPCA2B_PROSTATE	0.89	1	0.2331	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TTC6--MIPOL1	1	25	TTC6	1162	chr14:38065213:+	MIPOL1	77335	chr14:37892060:+	ONLY_REF_SPLICE	YES	48	46	0.35	0.36	0.0146	0.3642	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.35	0.36	0.3788	TRUE	0	2	0	1	2	TRUE	ACH-000952
MDAPCA2B_PROSTATE	NRIP1--AF127936.7	5	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.44	1	0.0728	0.0437	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAPCA2B_PROSTATE	0.44	1	0.1165	FALSE	125	705	46	456	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	NRIP1--AF127936.7	5	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0728	0.0291	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAPCA2B_PROSTATE	0.88	1	0.1019	FALSE	292	1546	117	613	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	GLG1--WDR59	5	1	GLG1	1458	chr16:74640555:-	WDR59	40847	chr16:74999720:-	ONLY_REF_SPLICE	YES	40	10	0.13	0.38	0.0728	0.0146	GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-	MDAPCA2B_PROSTATE	0.13	0.38	0.0874	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	NRIP1--AF127936.7	4	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	0	0.41	1	0.0583	0.0728	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MDAPCA2B_PROSTATE	0.41	1	0.1311	FALSE	164	806	69	479	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	PCAT1--RP11-382A18.2	5	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0728	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	MDAPCA2B_PROSTATE	1	1	0.0728	TRUE	4	84	1	46	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	C8orf31--LY6E	1	15	C8orf31	3373	chr8:144124679:+	LY6E	16457	chr8:144102305:+	ONLY_REF_SPLICE	YES	0	90	1	0.15	0.0146	0.2185	LOCAL_REARRANGEMENT:+:[15377],C8orf31->chr8:144120626-144141359:+,chromosome_8_open_reading_frame_31,LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E	MDAPCA2B_PROSTATE	0.15	1	0.2331	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MDAPCA2B_PROSTATE	1	1	0.0583	TRUE	0	0	0	434	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	TUSC3--POLB	3	3	TUSC3	10467	chr8:15531345:+	POLB	23526	chr8:42196137:+	INCL_NON_REF_SPLICE	YES	62	113	0.09	0.05	0.0437	0.0437	TUSC3->chr8:15274724-15624158:+,tumor_suppressor_candidate_3,POLB->chr8:42195972-42229326:+,polymerase_(DNA)_beta	MDAPCA2B_PROSTATE	0.05	0.09	0.0874	TRUE	0	0	0	1	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	SLC25A21--MIPOL1	2	6	SLC25A21	1586	chr14:37641486:-	MIPOL1	25364	chr14:37716308:+	ONLY_REF_SPLICE	YES	8	26	0.5	0.24	0.0291	0.0874	LOCAL_INVERSION:-:+:[25047],SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.24	0.5	0.1165	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	FASN--RPS28	3	0	FASN	1174	chr17:80056035:-	RPS28	23122	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0437	0	FASN->chr17:80036214-80056208:-,fatty_acid_synthase,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MDAPCA2B_PROSTATE	1	1	0.0437	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	SLC25A21--MIPOL1	1	7	SLC25A21	1586	chr14:37641486:-	MIPOL1	20838	chr14:37681435:+	ONLY_REF_SPLICE	YES	8	17	0.5	0.32	0.0146	0.102	LOCAL_INVERSION:-:+:[25047],SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.32	0.5	0.1166	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	SLC25A21--MIPOL1	1	7	SLC25A21	1586	chr14:37641486:-	MIPOL1	21966	chr14:37688758:+	ONLY_REF_SPLICE	NO	8	24	0.5	0.25	0.0146	0.102	LOCAL_INVERSION:-:+:[25047],SLC25A21->chr14:37147636-37642071:-,solute_carrier_family_25_member_21,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAPCA2B_PROSTATE	0.25	0.5	0.1166	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	CMTM8--CMTM7	2	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	37	6	0.07	0.33	0.0291	0.0146	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	MDAPCA2B_PROSTATE	0.07	0.33	0.0437	FALSE	118	557	29	88	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	FTO--AKTIP	2	0	FTO	1267	chr16:53738141:+	AKTIP	35537	chr16:53534241:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	GTEx&tcga_normals:1/3694=0.03%,FTO->chr16:53737875-54155853:+,fat_mass_and_obesity_associated,AKTIP->AKT_interacting_protein,chr16:53524952-53538323:-	MDAPCA2B_PROSTATE	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	GDF15--CTD-2207O23.12	2	0	GDF15	4101	chr19:18497276:+	CTD-2207O23.12	11757	chr19:7584091:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	GDF15->Oncogene{Bushman},chr19:18485541-18499986:+,growth_differentiation_factor_15,CTD-2207O23.12->chr19:7571938-7584508:+	MDAPCA2B_PROSTATE	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	RP11-435B5.4--AC079776.7	2	0	RP11-435B5.4	2843	chr1:143465380:-	AC079776.7	23272	chr2:130726375:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	RP11-435B5.4->chr1:143354963-143467632:-,AC079776.7->chr2:130724165-130738039:-	MDAPCA2B_PROSTATE	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TP53BP2--RP11-592B15.4	2	0	TP53BP2	1319	chr1:224033356:-	RP11-592B15.4	27492	chr10:51364771:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	TP53BP2->Oncogene{Bushman},chr1:223967601-224033674:-,tumor_protein_p53_binding_protein_2,RP11-592B15.4->chr10:51287081-51371070:-	MDAPCA2B_PROSTATE	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	TUSC3--POLB	1	2	TUSC3	10467	chr8:15531345:+	POLB	26055	chr8:42202471:+	ONLY_REF_SPLICE	YES	62	195	0.05	0.02	0.0146	0.0291	TUSC3->chr8:15274724-15624158:+,tumor_suppressor_candidate_3,POLB->chr8:42195972-42229326:+,polymerase_(DNA)_beta	MDAPCA2B_PROSTATE	0.02	0.05	0.0437	TRUE	0	0	0	1	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	CDK19--AMD1	1	1	CDK19	1950	chr6:111136212:-	AMD1	26680	chr6:111208708:+	ONLY_REF_SPLICE	YES	63	1153	0.03	0	0.0146	0.0146	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Brain_-_Putamen_(basal_ganglia)=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[58812],CDK19->chr6:110931181-111137161:-,cyclin-dependent_kinase_19,AMD1->adenosylmethionine_decarboxylase_1,chr6:111195973-111216916:+	MDAPCA2B_PROSTATE	0	0.03	0.0292	FALSE	0	0	0	1	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	CDK19--AMD1	1	1	CDK19	5938	chr6:111067329:-	AMD1	26680	chr6:111208708:+	ONLY_REF_SPLICE	YES	125	1153	0.02	0	0.0146	0.0146	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Brain_-_Putamen_(basal_ganglia)=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[58812],CDK19->chr6:110931181-111137161:-,cyclin-dependent_kinase_19,AMD1->adenosylmethionine_decarboxylase_1,chr6:111195973-111216916:+	MDAPCA2B_PROSTATE	0	0.02	0.0292	FALSE	0	0	0	1	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	KMT2C--RP11-328J2.1	1	1	KMT2C	3611	chr7:152027686:-	RP11-328J2.1	76985	chr7:119422411:-	ONLY_REF_SPLICE	NO	11	0	0.15	1	0.0146	0.0146	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,RP11-328J2.1->chr7:119344610-119547429:-	MDAPCA2B_PROSTATE	0.15	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	MNT--KDM6B	1	1	MNT	5622	chr17:2297337:-	KDM6B	21078	chr17:7748219:+	ONLY_REF_SPLICE	NO	27	14	0.07	0.12	0.0146	0.0146	MNT->MAX_network_transcriptional_repressor,chr17:2287354-2304412:-,KDM6B->chr17:7743222-7758114:+,lysine_demethylase_6B	MDAPCA2B_PROSTATE	0.07	0.12	0.0292	TRUE	0	0	0	1	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	MORN4--SHOC2	1	1	MORN4	1241	chr10:99393104:-	SHOC2	12075	chr10:112723883:+	ONLY_REF_SPLICE	NO	48	4	0.04	0.33	0.0146	0.0146	MORN4->MORN_repeat_containing_4,chr10:99374310-99393344:-,SHOC2->SHOC2_leucine-rich_repeat_scaffold_protein,chr10:112679301-112773425:+	MDAPCA2B_PROSTATE	0.04	0.33	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000952
MDAPCA2B_PROSTATE	PICALM--SYTL2	1	1	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	172	25	0.01	0.07	0.0146	0.0146	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	MDAPCA2B_PROSTATE	0.01	0.07	0.0292	FALSE	4	2	0	20	0	FALSE	ACH-000952
MDAPCA2B_PROSTATE	TRAPPC9--KCNK9	1	1	TRAPPC9	55504	chr8:140898123:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	YES	113	0	0.02	1	0.0146	0.0146	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	MDAPCA2B_PROSTATE	0.02	1	0.0292	FALSE	7	13	2	16	0	FALSE	ACH-000952
LXF289_LUNG	RPL9P9--ERAL1	268	199	RPL9P9	2430	chr15:82664702:-	ERAL1	5883	chr17:27182165:+	INCL_NON_REF_SPLICE	YES	718	96	0.39	0.83	3.5804	2.6586	RPL9P9->chr15:82664459-82748784:-,ribosomal_protein_L9_pseudogene_9,ERAL1->Era_like_12S_mitochondrial_rRNA_chaperone_1,chr17:27181956-27188085:+	LXF289_LUNG	0.39	0.83	6.239	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	RPL9P9--ERAL1	84	73	RPL9P9	2430	chr15:82664702:-	ERAL1	7000	chr17:27183282:+	INCL_NON_REF_SPLICE	YES	718	211	0.18	0.43	1.1222	0.9752	RPL9P9->chr15:82664459-82748784:-,ribosomal_protein_L9_pseudogene_9,ERAL1->Era_like_12S_mitochondrial_rRNA_chaperone_1,chr17:27181956-27188085:+	LXF289_LUNG	0.18	0.43	2.0974	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	TIMM23B--LINC00843	68	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9084	0.2004	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LXF289_LUNG	1	1	1.1088	TRUE	508	994	45	981	0	FALSE	ACH-000787
LXF289_LUNG	MT-TA--MT-TC	52	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6947	0.0134	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LXF289_LUNG	1	1	0.7081	FALSE	462	80	0	856	0	FALSE	ACH-000787
LXF289_LUNG	TIMM23--RP11-464F9.1	38	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	86	4	0.31	0.91	0.5077	0.0134	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LXF289_LUNG	0.31	0.91	0.5211	TRUE	519	3926	326	965	0	FALSE	ACH-000787
LXF289_LUNG	AP000525.9--LA16c-60G3.6	19	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.2538	0.0267	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	LXF289_LUNG	0.91	1	0.2805	TRUE	0	42	0	133	42	FALSE	ACH-000787
LXF289_LUNG	MT-ND6--MT-TE	18	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2405	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LXF289_LUNG	1	1	0.2405	FALSE	499	1288	110	792	0	FALSE	ACH-000787
LXF289_LUNG	KYNU--ARHGAP15	12	13	KYNU	4717	chr2:143643105:+	ARHGAP15	28065	chr2:143913046:+	ONLY_REF_SPLICE	YES	163	0	0.13	1	0.1603	0.1737	NEIGHBORS[49041],KYNU->chr2:143635067-143799890:+,kynureninase,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	LXF289_LUNG	0.13	1	0.334	FALSE	0	0	0	1	0	FALSE	ACH-000787
LXF289_LUNG	MT-ND6--MT-TE	15	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2004	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LXF289_LUNG	1	1	0.2004	FALSE	499	1288	110	792	0	FALSE	ACH-000787
LXF289_LUNG	NPM1P24--SET	14	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.187	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LXF289_LUNG	1	1	0.187	TRUE	0	0	0	434	0	FALSE	ACH-000787
LXF289_LUNG	RP11-662B19.2--WDR37	14	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.187	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	LXF289_LUNG	1	1	0.187	TRUE	31	42	1	25	0	FALSE	ACH-000787
LXF289_LUNG	HSP90AB1--MT-RNR2	12	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2383	0	0.01	1	0.1603	0.0401	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LXF289_LUNG	0.01	1	0.2004	FALSE	13	9	0	364	0	FALSE	ACH-000787
LXF289_LUNG	RP11-59N23.1--CMAS	11	3	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	3	37	0.82	0.27	0.147	0.0401	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	LXF289_LUNG	0.27	0.82	0.1871	TRUE	21	102	17	28	0	FALSE	ACH-000787
LXF289_LUNG	RP11-96H19.1--RP11-446N19.1	11	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.147	0.0401	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LXF289_LUNG	0.88	1	0.1871	FALSE	515	4851	409	746	0	FALSE	ACH-000787
LXF289_LUNG	KYNU--ARHGAP15	10	5	KYNU	4717	chr2:143643105:+	ARHGAP15	30357	chr2:143959703:+	ONLY_REF_SPLICE	YES	163	7	0.08	0.68	0.1336	0.0668	NEIGHBORS[49041],KYNU->chr2:143635067-143799890:+,kynureninase,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	LXF289_LUNG	0.08	0.68	0.2004	FALSE	0	0	0	1	0	FALSE	ACH-000787
LXF289_LUNG	RP11-680G10.1--GSE1	10	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	10	1	0.55	0.1336	0.0267	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LXF289_LUNG	0.55	1	0.1603	TRUE	465	1949	224	605	0	FALSE	ACH-000787
LXF289_LUNG	MT-ND6--MT-TE	9	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1202	0.0534	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LXF289_LUNG	1	1	0.1736	FALSE	499	1288	110	792	0	FALSE	ACH-000787
LXF289_LUNG	RP11-680G10.1--GSE1	9	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.86	0.1202	0.0401	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LXF289_LUNG	0.86	1	0.1603	TRUE	458	1351	185	561	0	FALSE	ACH-000787
LXF289_LUNG	MT-ATP6--MT-CO1	9	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8195	16249	0	0	0.1202	0.0134	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LXF289_LUNG	0	0	0.1336	FALSE	183	104	9	328	0	FALSE	ACH-000787
LXF289_LUNG	MT-ATP6--MT-CO1	9	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1202	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LXF289_LUNG	1	1	0.1202	FALSE	183	104	9	328	0	FALSE	ACH-000787
LXF289_LUNG	HSP90AB1--MT-RNR2	8	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2367	0	0	1	0.1069	0.0401	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LXF289_LUNG	0	1	0.147	FALSE	13	9	0	364	0	FALSE	ACH-000787
LXF289_LUNG	MT-ND1--MT-TL1	6	7	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0802	0.0935	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	LXF289_LUNG	1	1	0.1737	FALSE	210	95	5	49	0	FALSE	ACH-000787
LXF289_LUNG	MT-CO2--MT-ND2	7	2	MT-CO2	1320	chrM:7905:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	13736	3162	0	0	0.0935	0.0267	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	LXF289_LUNG	0	0	0.1202	FALSE	105	46	5	21	0	FALSE	ACH-000787
LXF289_LUNG	RP4-565E6.1--HYDIN	6	5	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	3	1	0.79	0.0802	0.0668	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	LXF289_LUNG	0.79	1	0.147	TRUE	456	1387	91	133	0	FALSE	ACH-000787
LXF289_LUNG	GLCE--NOX5	7	0	GLCE	1174	chr15:69453096:+	NOX5	19550	chr15:69318868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0935	0	LOCAL_REARRANGEMENT:+:[97840],GLCE->chr15:69452923-69564556:+,glucuronic_acid_epimerase,NOX5->NADPH_oxidase,_EF-hand_calcium_binding_domain_5,chr15:69222864-69355083:+	LXF289_LUNG	1	1	0.0935	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0935	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	LXF289_LUNG	1	1	0.0935	TRUE	1	39	0	134	39	FALSE	ACH-000787
LXF289_LUNG	MT-ND1--MT-TL1	3	13	MT-ND1	1342	chrM:3648:+	MT-TL1	5013	chrM:3286:+	INCL_NON_REF_SPLICE	YES	3	0	0.84	1	0.0401	0.1737	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	LXF289_LUNG	0.84	1	0.2138	FALSE	210	95	5	49	0	FALSE	ACH-000787
LXF289_LUNG	SLC7A5--MT-ND4L	6	1	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1537	0	0	1	0.0802	0.0134	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LXF289_LUNG	0	1	0.0936	FALSE	0	0	0	23	0	FALSE	ACH-000787
LXF289_LUNG	VTI1A--RP11-57H14.3	6	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	34	0	0.17	1	0.0802	0.0134	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	LXF289_LUNG	0.17	1	0.0936	FALSE	272	151	14	158	0	FALSE	ACH-000787
LXF289_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0802	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LXF289_LUNG	1	1	0.0802	FALSE	499	1288	110	792	0	FALSE	ACH-000787
LXF289_LUNG	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0802	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LXF289_LUNG	1	1	0.0802	FALSE	462	80	0	856	0	FALSE	ACH-000787
LXF289_LUNG	RP11-353N4.6--SEC22B	6	0	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0802	0	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	LXF289_LUNG	1	1	0.0802	TRUE	49	42	7	43	0	FALSE	ACH-000787
LXF289_LUNG	RP11-123O10.4--GRIP1	5	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0668	0.0401	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LXF289_LUNG	1	1	0.1069	FALSE	416	2512	207	587	0	FALSE	ACH-000787
LXF289_LUNG	TNPO3--TES	5	2	TNPO3	24442	chr7:128607334:-	TES	38288	chr7:115897348:+	ONLY_REF_SPLICE	YES	58	272	0.11	0.03	0.0668	0.0267	TNPO3->chr7:128594948-128695198:-,transportin_3,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	LXF289_LUNG	0.03	0.11	0.0935	TRUE	0	0	0	1	0	FALSE	ACH-000787
LXF289_LUNG	ACTN4--MT-CO1	5	1	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	2162	15933	0	0	0.0668	0.0134	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LXF289_LUNG	0	0	0.0802	FALSE	0	0	0	30	0	FALSE	ACH-000787
LXF289_LUNG	MT-ND1--MT-TL1	3	9	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.0401	0.1202	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	LXF289_LUNG	0.86	1	0.1603	FALSE	210	95	5	49	0	FALSE	ACH-000787
LXF289_LUNG	YIF1B--GGN	5	1	YIF1B	2217	chr19:38806509:-	GGN	12298	chr19:38877669:-	ONLY_REF_SPLICE	YES	6	2	0.5	0.75	0.0668	0.0134	LOCAL_REARRANGEMENT:-:[66992],YIF1B->Yip1_interacting_factor_homolog_B,_membrane_trafficking_protein,chr19:38795753-38807913:-,GGN->chr19:38874905-38878722:-,gametogenetin	LXF289_LUNG	0.5	0.75	0.0802	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	MT-ND6--MT-TE	4	4	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0.0534	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LXF289_LUNG	1	1	0.1068	FALSE	499	1288	110	792	0	FALSE	ACH-000787
LXF289_LUNG	MT-ND6--MT-TE	3	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0.0802	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LXF289_LUNG	1	1	0.1203	FALSE	499	1288	110	792	0	FALSE	ACH-000787
LXF289_LUNG	MT-CO2--MT-ND2	4	1	MT-CO2	1281	chrM:7866:+	MT-ND2	5518	chrM:5303:+	INCL_NON_REF_SPLICE	YES	13220	4536	0	0	0.0534	0.0134	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	LXF289_LUNG	0	0	0.0668	FALSE	105	46	5	21	0	FALSE	ACH-000787
LXF289_LUNG	MT-CO2--MT-ND2	4	1	MT-CO2	1240	chrM:7825:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	12320	3162	0	0	0.0534	0.0134	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	LXF289_LUNG	0	0	0.0668	FALSE	105	46	5	21	0	FALSE	ACH-000787
LXF289_LUNG	MT-TA--MT-TC	4	1	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0.0134	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LXF289_LUNG	1	1	0.0668	FALSE	462	80	0	856	0	FALSE	ACH-000787
LXF289_LUNG	YIF1B--GGN	4	1	YIF1B	2217	chr19:38806509:-	GGN	11505	chr19:38878462:-	ONLY_REF_SPLICE	YES	6	1	0.45	0.83	0.0534	0.0134	LOCAL_REARRANGEMENT:-:[66992],YIF1B->Yip1_interacting_factor_homolog_B,_membrane_trafficking_protein,chr19:38795753-38807913:-,GGN->chr19:38874905-38878722:-,gametogenetin	LXF289_LUNG	0.45	0.83	0.0668	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	FTH1--ACTG1	4	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	LXF289_LUNG	1	1	0.0534	TRUE	0	0	0	64	0	FALSE	ACH-000787
LXF289_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LXF289_LUNG	1	1	0.0534	FALSE	499	1288	110	792	0	FALSE	ACH-000787
LXF289_LUNG	RP11-120D5.1--MID1	3	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	34	0.71	0.13	0.0401	0.0267	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LXF289_LUNG	0.13	0.71	0.0668	FALSE	16	356	14	466	0	FALSE	ACH-000787
LXF289_LUNG	CCDC122--ENOX1	3	1	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	17	0	0.19	1	0.0401	0.0134	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	LXF289_LUNG	0.19	1	0.0535	FALSE	39	52	2	34	0	FALSE	ACH-000787
LXF289_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	7779	14626	0	0	0.0401	0.0134	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LXF289_LUNG	0	0	0.0535	FALSE	183	104	9	328	0	FALSE	ACH-000787
LXF289_LUNG	MT-TA--MT-TC	3	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0401	0.0134	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LXF289_LUNG	1	1	0.0535	FALSE	462	80	0	856	0	FALSE	ACH-000787
LXF289_LUNG	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0267	0.0668	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LXF289_LUNG	0.78	1	0.0935	FALSE	407	2205	196	549	0	FALSE	ACH-000787
LXF289_LUNG	FTH1--ACTG1	3	0	FTH1	1226	chr11:61734907:-	ACTG1	10990	chr17:79479386:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	LXF289_LUNG	1	1	0.0401	TRUE	0	0	0	64	0	FALSE	ACH-000787
LXF289_LUNG	FTH1--ACTG1	3	0	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	LXF289_LUNG	1	1	0.0401	TRUE	0	0	0	64	0	FALSE	ACH-000787
LXF289_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1578	chrM:9104:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LXF289_LUNG	1	1	0.0401	FALSE	183	104	9	328	0	FALSE	ACH-000787
LXF289_LUNG	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LXF289_LUNG	1	1	0.0401	TRUE	0	0	0	434	0	FALSE	ACH-000787
LXF289_LUNG	RP11-108K3.1--GLDN	2	1	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0.0134	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	LXF289_LUNG	1	1	0.0401	FALSE	0	19	0	46	0	FALSE	ACH-000787
LXF289_LUNG	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0134	0.0668	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LXF289_LUNG	1	1	0.0802	FALSE	192	492	57	212	0	FALSE	ACH-000787
LXF289_LUNG	YIF1B--GGN	2	1	YIF1B	2217	chr19:38806509:-	GGN	12047	chr19:38877920:-	ONLY_REF_SPLICE	YES	6	1	0.33	0.75	0.0267	0.0134	LOCAL_REARRANGEMENT:-:[66992],YIF1B->Yip1_interacting_factor_homolog_B,_membrane_trafficking_protein,chr19:38795753-38807913:-,GGN->chr19:38874905-38878722:-,gametogenetin	LXF289_LUNG	0.33	0.75	0.0401	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	C17orf76-AS1--SMAD2	2	0	C17orf76-AS1	1593	chr17:16342728:+	SMAD2	18292	chr18:45423180:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	C17orf76-AS1->chr17:16342136-16381992:+,SMAD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_2,chr18:45357922-45457515:-	LXF289_LUNG	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	LXF289_LUNG	1	1	0.0267	FALSE	292	1546	117	613	0	FALSE	ACH-000787
LXF289_LUNG	RP11-108K3.1--GLDN	2	0	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	LXF289_LUNG	1	1	0.0267	FALSE	0	30	1	55	0	FALSE	ACH-000787
LXF289_LUNG	STAG3L1--MAD1L1	2	0	STAG3L1	8935	chr7:75014432:+	MAD1L1	42165	chr7:2041756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	STAG3L1->chr7:74988448-75024657:+,stromal_antigen_3-like_1_(pseudogene),MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	LXF289_LUNG	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LXF289_LUNG	1	1	0.0267	TRUE	62	24	1	171	0	FALSE	ACH-000787
LXF289_LUNG	TMEM120B--KLC1	2	0	TMEM120B	1213	chr12:122150870:+	KLC1	37806	chr14:104153418:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	TMEM120B->chr12:122150658-122220907:+,transmembrane_protein_120B,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	LXF289_LUNG	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0134	0.0401	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LXF289_LUNG	1	1	0.0535	FALSE	467	2173	244	435	0	FALSE	ACH-000787
LXF289_LUNG	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0134	0.0134	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LXF289_LUNG	1	1	0.0268	FALSE	93	270	15	244	0	FALSE	ACH-000787
LXF289_LUNG	RP11-353N4.6--SEC22B	1	1	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	NO	68	95	0.03	0.02	0.0134	0.0134	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	LXF289_LUNG	0.02	0.03	0.0268	TRUE	49	42	7	43	0	FALSE	ACH-000787
LXF289_LUNG	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	13	1	0.13	0.0134	0.0134	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LXF289_LUNG	0.13	1	0.0268	TRUE	64	13	3	59	0	FALSE	ACH-000787
LXF289_LUNG	TASP1--RP5-1069C8.2	1	1	TASP1	21244	chr20:13296617:-	RP5-1069C8.2	29257	chr20:12921584:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0134	0.0134	TASP1->chr20:13246709-13619587:-,taspase_1,RP5-1069C8.2->chr20:12845850-12933167:-	LXF289_LUNG	1	1	0.0268	TRUE	1	0	0	3	0	TRUE	ACH-000787
LXF289_LUNG	TRA2A--BRAT1	1	1	TRA2A	8732	chr7:23545365:-	BRAT1	16239	chr7:2584690:-	ONLY_REF_SPLICE	YES	75	87	0.03	0.02	0.0134	0.0134	TRA2A->chr7:23544399-23571660:-,transformer_2_alpha_homolog,BRAT1->BRCA1_associated_ATM_activator_1,Oncogene{Bushman},chr7:2577511-2595361:-	LXF289_LUNG	0.02	0.03	0.0268	TRUE	0	0	0	1	0	FALSE	ACH-000787
LXF289_LUNG	YIF1B--GGN	1	1	YIF1B	2226	chr19:38806500:-	GGN	12298	chr19:38877669:-	ONLY_REF_SPLICE	YES	17	2	0.11	0.5	0.0134	0.0134	LOCAL_REARRANGEMENT:-:[66992],YIF1B->Yip1_interacting_factor_homolog_B,_membrane_trafficking_protein,chr19:38795753-38807913:-,GGN->chr19:38874905-38878722:-,gametogenetin	LXF289_LUNG	0.11	0.5	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000787
LXF289_LUNG	YIF1B--GGN	1	1	YIF1B	2226	chr19:38806500:-	GGN	12047	chr19:38877920:-	ONLY_REF_SPLICE	YES	17	1	0.11	0.67	0.0134	0.0134	LOCAL_REARRANGEMENT:-:[66992],YIF1B->Yip1_interacting_factor_homolog_B,_membrane_trafficking_protein,chr19:38795753-38807913:-,GGN->chr19:38874905-38878722:-,gametogenetin	LXF289_LUNG	0.11	0.67	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000787
MALME3M_SKIN	TIMM23B--LINC00843	82	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0517	0.295	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MALME3M_SKIN	1	1	1.3467	TRUE	508	994	45	981	0	FALSE	ACH-000477
MALME3M_SKIN	KIAA0556--EME2	50	23	KIAA0556	21697	chr16:27751783:+	EME2	47195	chr16:1828416:+	INCL_NON_REF_SPLICE	YES	5	41	0.94	0.64	0.6413	0.295	KIAA0556->KIAA0556,chr16:27561454-27791690:+,EME2->chr16:1823208-1831709:+,essential_meiotic_structure-specific_endonuclease_subunit_2	MALME3M_SKIN	0.64	0.94	0.9363	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	MAPK8IP3--ABAT	52	7	MAPK8IP3	2596	chr16:1774678:+	ABAT	43786	chr16:8857926:+	ONLY_REF_SPLICE	YES	25	5	0.7	0.92	0.6669	0.0898	MAPK8IP3->chr16:1756184-1820318:+,mitogen-activated_protein_kinase_8_interacting_protein_3,ABAT->4-aminobutyrate_aminotransferase,chr16:8768422-8878432:+	MALME3M_SKIN	0.7	0.92	0.7567	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	PARN--ANKS3	50	13	PARN	27201	chr16:14645878:-	ANKS3	46291	chr16:4755254:-	ONLY_REF_SPLICE	YES	112	21	0.36	0.75	0.6413	0.1667	PARN->chr16:14529558-14726585:-,poly(A)-specific_ribonuclease,ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-	MALME3M_SKIN	0.36	0.75	0.808	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	TIMM23--RP11-464F9.1	48	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	113	1	0.31	0.98	0.6156	0.0257	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MALME3M_SKIN	0.31	0.98	0.6413	TRUE	519	3926	326	965	0	FALSE	ACH-000477
MALME3M_SKIN	MT-TA--MT-TC	40	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.513	0.1026	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MALME3M_SKIN	1	1	0.6156	FALSE	462	80	0	856	0	FALSE	ACH-000477
MALME3M_SKIN	RP1-34H18.1--NAV3	30	6	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3848	0.077	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	MALME3M_SKIN	1	1	0.4618	TRUE	254	575	65	124	0	FALSE	ACH-000477
MALME3M_SKIN	MT-ND6--MT-TE	28	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3591	0.0257	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MALME3M_SKIN	1	1	0.3848	FALSE	499	1288	110	792	0	FALSE	ACH-000477
MALME3M_SKIN	MT-ND6--MT-TE	18	14	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2309	0.1796	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MALME3M_SKIN	0.97	1	0.4105	FALSE	499	1288	110	792	0	FALSE	ACH-000477
MALME3M_SKIN	GPR114--SCNN1B	18	3	GPR114	1281	chr16:57576613:+	SCNN1B	23838	chr16:23359913:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2309	0.0385	GPR114->chr16:57576333-57625593:+,SCNN1B->Oncogene{Bushman},chr16:23289552-23392620:+,sodium_channel_epithelial_1_beta_subunit	MALME3M_SKIN	1	1	0.2694	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	ZNF654--HMGB2	18	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2309	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MALME3M_SKIN	1	1	0.2309	TRUE	0	0	0	518	0	FALSE	ACH-000477
MALME3M_SKIN	MT-ND6--MT-TE	15	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1924	0.0257	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MALME3M_SKIN	1	1	0.2181	FALSE	499	1288	110	792	0	FALSE	ACH-000477
MALME3M_SKIN	PLXDC1--TAF13	15	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1924	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	MALME3M_SKIN	1	1	0.1924	TRUE	7	10	0	216	0	FALSE	ACH-000477
MALME3M_SKIN	RP11-444D3.1--SOX5	14	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	5	1	0.76	0.1796	0.0257	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MALME3M_SKIN	0.76	1	0.2053	TRUE	477	1352	189	275	0	FALSE	ACH-000477
MALME3M_SKIN	C15orf57--CBX3	11	10	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	16	44	0.57	0.32	0.1411	0.1283	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MALME3M_SKIN	0.32	0.57	0.2694	TRUE	267	562	48	632	0	FALSE	ACH-000477
MALME3M_SKIN	RP11-141M1.3--STARD13	12	6	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	31	0.86	0.37	0.1539	0.077	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	MALME3M_SKIN	0.37	0.86	0.2309	FALSE	141	264	50	91	0	FALSE	ACH-000477
MALME3M_SKIN	DGCR2--RAC2	12	4	DGCR2	1327	chr22:19109641:-	RAC2	20620	chr22:37637698:-	ONLY_REF_SPLICE	YES	204	59	0.07	0.21	0.1539	0.0513	DGCR2->DiGeorge_syndrome_critical_region_gene_2,chr22:19023795-19109967:-,RAC2->Oncogene{Bushman},chr22:37621301-37640488:-,ras-related_C3_botulinum_toxin_substrate_2_(rho_family,_small_GTP_binding_protein_Rac2)	MALME3M_SKIN	0.07	0.21	0.2052	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	MT-TA--MT-TC	10	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1283	0.0898	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MALME3M_SKIN	1	1	0.2181	FALSE	462	80	0	856	0	FALSE	ACH-000477
MALME3M_SKIN	KIFC3--SCNN1B	6	11	KIFC3	23665	chr16:57799371:-	SCNN1B	38467	chr16:23359913:+	ONLY_REF_SPLICE	YES	115	0	0.13	1	0.077	0.1411	KIFC3->chr16:57792129-57896957:-,kinesin_family_member_C3,SCNN1B->Oncogene{Bushman},chr16:23289552-23392620:+,sodium_channel_epithelial_1_beta_subunit	MALME3M_SKIN	0.13	1	0.2181	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1026	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MALME3M_SKIN	1	1	0.1026	FALSE	462	80	0	856	0	FALSE	ACH-000477
MALME3M_SKIN	KIAA0556--EME2	6	5	KIAA0556	21567	chr16:27751653:+	EME2	47191	chr16:1828412:+	INCL_NON_REF_SPLICE	YES	8	41	0.58	0.21	0.077	0.0641	KIAA0556->KIAA0556,chr16:27561454-27791690:+,EME2->chr16:1823208-1831709:+,essential_meiotic_structure-specific_endonuclease_subunit_2	MALME3M_SKIN	0.21	0.58	0.1411	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	KIFC3--SCNN1B	3	17	KIFC3	24912	chr16:57798055:-	SCNN1B	38467	chr16:23359913:+	ONLY_REF_SPLICE	YES	106	0	0.16	1	0.0385	0.218	KIFC3->chr16:57792129-57896957:-,kinesin_family_member_C3,SCNN1B->Oncogene{Bushman},chr16:23289552-23392620:+,sodium_channel_epithelial_1_beta_subunit	MALME3M_SKIN	0.16	1	0.2565	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	C15orf57--CBX3	5	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	15	44	0.46	0.23	0.0641	0.1026	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MALME3M_SKIN	0.23	0.46	0.1667	TRUE	267	562	48	632	0	FALSE	ACH-000477
MALME3M_SKIN	MT-ND6--MT-TE	7	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0898	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MALME3M_SKIN	1	1	0.0898	FALSE	499	1288	110	792	0	FALSE	ACH-000477
MALME3M_SKIN	MT-ND6--MT-TE	4	12	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0.1539	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MALME3M_SKIN	1	1	0.2052	FALSE	499	1288	110	792	0	FALSE	ACH-000477
MALME3M_SKIN	SFI1--RFPL2	7	0	SFI1	2459	chr22:31892623:+	RFPL2	46026	chr22:32589179:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0898	0	SFI1->SFI1_centrin_binding_protein,chr22:31884674-32014572:+,RFPL2->chr22:32586422-32600718:-,ret_finger_protein_like_2	MALME3M_SKIN	1	1	0.0898	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	MT-ND6--MT-TE	3	14	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0.1796	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MALME3M_SKIN	1	1	0.2181	FALSE	499	1288	110	792	0	FALSE	ACH-000477
MALME3M_SKIN	RP11-680G10.1--GSE1	6	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	16	1	0.33	0.077	0.0257	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MALME3M_SKIN	0.33	1	0.1027	TRUE	465	1949	224	605	0	FALSE	ACH-000477
MALME3M_SKIN	EIF4ENIF1--PI4KA	6	1	EIF4ENIF1	2400	chr22:31885680:-	PI4KA	42573	chr22:21156393:-	ONLY_REF_SPLICE	YES	0	109	1	0.06	0.077	0.0128	EIF4ENIF1->chr22:31832963-31892094:-,eukaryotic_translation_initiation_factor_4E_nuclear_import_factor_1,PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha	MALME3M_SKIN	0.06	1	0.0898	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	MT-TA--MT-TC	4	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0.1154	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MALME3M_SKIN	1	1	0.1667	FALSE	462	80	0	856	0	FALSE	ACH-000477
MALME3M_SKIN	RP11-141M1.3--STARD13	4	8	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	31	0.92	0.28	0.0513	0.1026	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	MALME3M_SKIN	0.28	0.92	0.1539	FALSE	49	120	16	70	0	FALSE	ACH-000477
MALME3M_SKIN	PMEL--MT-CO3	4	7	PMEL	8323	chr12:56351362:-	MT-CO3	14834	chrM:9244:+	INCL_NON_REF_SPLICE	YES	14330	0	0	1	0.0513	0.0898	PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MALME3M_SKIN	0	1	0.1411	FALSE	0	0	0	2	0	FALSE	ACH-000477
MALME3M_SKIN	MMP17--NOC4L	5	0	MMP17	1261	chr12:132313198:+	NOC4L	19756	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0641	0	GTEx_FI:{Brain=[count:15=pct:2.3]},MMP17->chr12:132312938-132336328:+,matrix_metallopeptidase_17,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	MALME3M_SKIN	1	1	0.0641	TRUE	7	45	0	7	0	FALSE	ACH-000477
MALME3M_SKIN	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MALME3M_SKIN	1	1	0.0641	FALSE	499	1288	110	792	0	FALSE	ACH-000477
MALME3M_SKIN	PMEL--MT-CO3	3	7	PMEL	8329	chr12:56351356:-	MT-CO3	14839	chrM:9249:+	INCL_NON_REF_SPLICE	YES	14016	0	0	1	0.0385	0.0898	PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MALME3M_SKIN	0	1	0.1283	FALSE	0	0	0	2	0	FALSE	ACH-000477
MALME3M_SKIN	C10orf90--UROS	4	1	C10orf90	2343	chr10:128335134:-	UROS	25548	chr10:127505094:-	ONLY_REF_SPLICE	YES	91	92	0.05	0.05	0.0513	0.0128	C10orf90->chr10:128113566-128359079:-,chromosome_10_open_reading_frame_90,UROS->chr10:127477146-127511817:-,uroporphyrinogen_III_synthase	MALME3M_SKIN	0.05	0.05	0.0641	TRUE	0	0	0	1	0	FALSE	ACH-000477
MALME3M_SKIN	LIF--MT-CO1	4	1	LIF	5672	chr22:30637426:-	MT-CO1	10647	chrM:6888:+	INCL_NON_REF_SPLICE	NO	241	23308	0.02	0	0.0513	0.0128	LIF->chr22:30636436-30642840:-,leukemia_inhibitory_factor,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MALME3M_SKIN	0	0.02	0.0641	FALSE	0	0	0	1	0	FALSE	ACH-000477
MALME3M_SKIN	RP11-1E3.1--RP11-455B3.1	3	2	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0.0257	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	MALME3M_SKIN	1	1	0.0642	TRUE	13	49	2	38	0	FALSE	ACH-000477
MALME3M_SKIN	CSNK2A2--NDUFAB1	3	1	CSNK2A2	5609	chr16:58218164:-	NDUFAB1	24477	chr16:23598640:-	ONLY_REF_SPLICE	YES	58	369	0.06	0.01	0.0385	0.0128	CSNK2A2->casein_kinase_2_alpha_2,chr16:58191811-58231824:-,NDUFAB1->NADH:ubiquinone_oxidoreductase_subunit_AB1,chr16:23592323-23607677:-	MALME3M_SKIN	0.01	0.06	0.0513	FALSE	0	0	0	1	0	FALSE	ACH-000477
MALME3M_SKIN	ANP32B--APP	3	0	ANP32B	8117	chr9:100773588:+	APP	24328	chr21:27394353:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	MALME3M_SKIN	1	1	0.0385	TRUE	0	0	0	7	0	TRUE	ACH-000477
MALME3M_SKIN	LIF--MT-CO1	3	0	LIF	3257	chr22:30639841:-	MT-CO1	10305	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	LIF->chr22:30636436-30642840:-,leukemia_inhibitory_factor,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MALME3M_SKIN	1	1	0.0385	FALSE	0	0	0	8	0	FALSE	ACH-000477
MALME3M_SKIN	PMEL--MT-ND2	3	0	PMEL	8344	chr12:56351341:-	MT-ND2	15485	chrM:5158:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MALME3M_SKIN	1	1	0.0385	FALSE	0	0	0	1	0	FALSE	ACH-000477
MALME3M_SKIN	DGCR2--SERHL	2	2	DGCR2	9277	chr22:19044499:-	SERHL	20331	chr22:42897631:+	ONLY_REF_SPLICE	YES	96	0	0.04	1	0.0257	0.0257	DGCR2->DiGeorge_syndrome_critical_region_gene_2,chr22:19023795-19109967:-,SERHL->chr22:42896585-42908566:+,serine_hydrolase-like_(pseudogene)	MALME3M_SKIN	0.04	1	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	HPS4--PI4KA	2	2	HPS4	16239	chr22:26859883:-	PI4KA	50132	chr22:21107468:-	ONLY_REF_SPLICE	YES	229	80	0.02	0.05	0.0257	0.0257	HPS4->HPS4,_biogenesis_of_lysosomal_organelles_complex_3_subunit_2,chr22:26839389-26879803:-,PI4KA->chr22:21061979-21213705:-,phosphatidylinositol_4-kinase_alpha	MALME3M_SKIN	0.02	0.05	0.0514	TRUE	0	0	0	1	0	FALSE	ACH-000477
MALME3M_SKIN	KIAA1644--SNRPD3	2	2	KIAA1644	4732	chr22:44681308:-	SNRPD3	20801	chr22:24977900:+	ONLY_REF_SPLICE	YES	88	1	0.04	0.8	0.0257	0.0257	KIAA1644->KIAA1644,chr22:44639547-44708731:-,SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide	MALME3M_SKIN	0.04	0.8	0.0514	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	KIAA1644--SNRPD3	2	1	KIAA1644	4732	chr22:44681308:-	SNRPD3	21922	chr22:24979650:+	ONLY_REF_SPLICE	YES	88	1	0.03	0.75	0.0257	0.0128	KIAA1644->KIAA1644,chr22:44639547-44708731:-,SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide	MALME3M_SKIN	0.03	0.75	0.0385	TRUE	0	0	0	1	0	FALSE	ACH-000477
MALME3M_SKIN	C17orf76-AS1--UBE2D2	2	0	C17orf76-AS1	1593	chr17:16342728:+	UBE2D2	16627	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	C17orf76-AS1->chr17:16342136-16381992:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	MALME3M_SKIN	1	1	0.0257	TRUE	0	2	0	1	1	TRUE	ACH-000477
MALME3M_SKIN	CTC-228N24.3--CAPG	2	0	CTC-228N24.3	1203	chr5:127418662:-	CAPG	26824	chr2:85628711:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	CTC-228N24.3->chr5:127276118-127418864:-,CAPG->Oncogene{Bushman},capping_actin_protein,_gelsolin_like,chr2:85621871-85645555:-	MALME3M_SKIN	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	SYN3--ISX	2	0	SYN3	5498	chr22:33376630:-	ISX	30488	chr22:35478511:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	SYN3->chr22:32908539-33454358:-,synapsin_III,ISX->chr22:35462129-35483380:+,intestine_specific_homeobox	MALME3M_SKIN	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000477
MALME3M_SKIN	RP1-34H18.1--RP11-781A6.1	1	2	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0128	0.0257	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	MALME3M_SKIN	1	1	0.0385	TRUE	94	160	11	37	0	FALSE	ACH-000477
MALME3M_SKIN	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	5	1	0.38	0.0128	0.0257	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MALME3M_SKIN	0.38	1	0.0385	TRUE	274	363	69	150	0	FALSE	ACH-000477
MALME3M_SKIN	CLDN6--FAHD1	1	1	CLDN6	2408	chr16:3068150:-	FAHD1	10681	chr16:1888017:+	ONLY_REF_SPLICE	YES	0	5	1	0.29	0.0128	0.0128	CLDN6->chr16:3064713-3070072:-,claudin_6,FAHD1->chr16:1876968-1890208:+,fumarylacetoacetate_hydrolase_domain_containing_1	MALME3M_SKIN	0.29	1	0.0256	TRUE	0	0	0	1	0	TRUE	ACH-000477
JHH4_LIVER	AC104389.28--HBE1	446	0	AC104389.28	1084	chr11:5526799:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	5.402	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JHH4_LIVER	1	1	5.402	TRUE	0	16	0	53	13	FALSE	ACH-000476
JHH4_LIVER	HSPBP1--GRK5	156	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.8895	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	JHH4_LIVER	1	1	1.8895	TRUE	1	39	0	134	39	FALSE	ACH-000476
JHH4_LIVER	TIMM23B--LINC00843	121	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4656	0.3028	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHH4_LIVER	1	1	1.7684	TRUE	508	994	45	981	0	FALSE	ACH-000476
JHH4_LIVER	TIMM23--RP11-464F9.1	83	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	188	3	0.32	0.97	1.0053	0.0484	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JHH4_LIVER	0.32	0.97	1.0537	TRUE	519	3926	326	965	0	FALSE	ACH-000476
JHH4_LIVER	MAN2A1--CDK14	54	17	MAN2A1	26690	chr5:109191035:+	CDK14	60577	chr7:90675212:+	ONLY_REF_SPLICE	YES	77	72	0.48	0.5	0.6541	0.2059	{Klijn_CCL:Liver=1},MAN2A1->chr5:109025067-109205326:+,mannosidase_alpha_class_2A_member_1,CDK14->chr7:90095738-90839905:+,cyclin-dependent_kinase_14	JHH4_LIVER	0.48	0.5	0.86	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	MT-ND4--MT-ND4L	3	209	MT-ND4	2290	chrM:12049:+	MT-ND4L	5392	chrM:10483:+	INCL_NON_REF_SPLICE	YES	15	0	0.93	1	0.0363	2.5314	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH4_LIVER	0.93	1	2.5677	FALSE	268	700	35	287	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND4--MT-ND4L	4	200	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	26	0	0.89	1	0.0484	2.4224	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH4_LIVER	0.89	1	2.4708	FALSE	344	826	44	306	0	FALSE	ACH-000476
JHH4_LIVER	AC104389.28--HBE1	48	20	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	50	11	0.58	0.86	0.5814	0.2422	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JHH4_LIVER	0.58	0.86	0.8236	TRUE	0	48	0	65	48	FALSE	ACH-000476
JHH4_LIVER	MT-ND4--MT-ND4L	3	200	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	26	0	0.89	1	0.0363	2.4224	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH4_LIVER	0.89	1	2.4587	FALSE	344	826	44	306	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND4--MT-ND4L	18	136	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	7058	0	0.02	1	0.218	1.6472	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH4_LIVER	0.02	1	1.8652	FALSE	344	827	44	306	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND4--MT-ND4L	9	138	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	7	0	0.95	1	0.109	1.6715	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH4_LIVER	0.95	1	1.7805	FALSE	344	821	44	306	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND4--MT-ND4L	4	129	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	131	0	0.5	1	0.0484	1.5625	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH4_LIVER	0.5	1	1.6109	FALSE	344	827	44	306	0	FALSE	ACH-000476
JHH4_LIVER	ZNF654--HMGB2	36	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.436	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JHH4_LIVER	1	1	0.436	TRUE	0	0	0	518	0	FALSE	ACH-000476
JHH4_LIVER	AC104389.28--HBE1	34	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4118	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JHH4_LIVER	1	1	0.4118	TRUE	0	16	0	53	13	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	29	18	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	6	1	0.89	0.98	0.3513	0.218	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	0.89	0.98	0.5693	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	24	11	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1702	11	0.02	0.76	0.2907	0.1332	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	0.02	0.76	0.4239	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND4--MT-ND4L	14	48	MT-ND4	2122	chrM:11881:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	10393	0	0.01	1	0.1696	0.5814	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH4_LIVER	0.01	1	0.751	FALSE	315	784	43	302	0	FALSE	ACH-000476
JHH4_LIVER	ADAM22--CAV2	24	7	ADAM22	4172	chr7:87607727:+	CAV2	61938	chr7:116067376:+	ONLY_REF_SPLICE	YES	5	0	0.86	1	0.2907	0.0848	ADAM22->ADAM_metallopeptidase_domain_22,chr7:87563458-87832204:+,CAV2->caveolin_2,chr7:115927434-116148595:+	JHH4_LIVER	0.86	1	0.3755	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	VOPP1--MRPS17	22	2	VOPP1	1718	chr7:55639964:-	MRPS17	29369	chr7:55990855:+	ONLY_REF_SPLICE	YES	41	4	0.37	0.86	0.2665	0.0242	VOPP1->chr7:55503749-55640681:-,vesicular,_overexpressed_in_cancer,_prosurvival_protein_1,MRPS17->chr7:55954970-56022932:+,chr7:56019512-56024192:+,mitochondrial_ribosomal_protein_S17	JHH4_LIVER	0.37	0.86	0.2907	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	MT-ND4--MT-ND4L	13	35	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9054	0	0.01	1	0.1575	0.4239	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH4_LIVER	0.01	1	0.5814	FALSE	344	827	44	306	0	FALSE	ACH-000476
JHH4_LIVER	NRG1--RP11-150O12.1	19	10	NRG1	8502	chr8:32474403:+	RP11-150O12.1	38725	chr8:37279087:-	ONLY_REF_SPLICE	YES	54	1	0.35	0.97	0.2301	0.1211	NRG1->chr8:31496902-32622548:+,neuregulin_1,RP11-150O12.1->chr8:37278859-37411701:-	JHH4_LIVER	0.35	0.97	0.3512	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	MT-ND4--MT-ND4L	6	48	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1171	0	0.04	1	0.0727	0.5814	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH4_LIVER	0.04	1	0.6541	FALSE	344	827	44	306	0	FALSE	ACH-000476
JHH4_LIVER	RP11-96H19.1--RP11-446N19.1	15	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	2	0.9	0.93	0.1817	0.1453	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHH4_LIVER	0.9	0.93	0.327	FALSE	515	4851	409	746	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND4--MT-ND4L	9	35	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	807	0	0.05	1	0.109	0.4239	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH4_LIVER	0.05	1	0.5329	FALSE	344	827	44	306	0	FALSE	ACH-000476
JHH4_LIVER	HSP90AB1--MT-RNR2	15	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2333	0	0.01	1	0.1817	0.0121	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH4_LIVER	0.01	1	0.1938	FALSE	13	9	0	364	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	9	23	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	5	0	0.86	1	0.109	0.2786	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	0.86	1	0.3876	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND4--MT-ND4L	6	34	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	53	0	0.43	1	0.0727	0.4118	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH4_LIVER	0.43	1	0.4845	FALSE	344	826	44	306	0	FALSE	ACH-000476
JHH4_LIVER	NPM1P24--SET	14	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1696	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	JHH4_LIVER	1	1	0.1696	TRUE	0	0	0	434	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND4--MT-ND4L	5	35	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1333	0	0.03	1	0.0606	0.4239	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH4_LIVER	0.03	1	0.4845	FALSE	344	827	44	306	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	11	10	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4175	116	0.01	0.15	0.1332	0.1211	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	0.01	0.15	0.2543	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	RP11-96H19.1--RP11-446N19.1	10	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.88	1	0.1211	0.1575	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHH4_LIVER	0.88	1	0.2786	FALSE	407	2205	196	549	0	FALSE	ACH-000476
JHH4_LIVER	C15orf57--CBX3	12	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	22	26	0.42	0.38	0.1453	0.0484	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JHH4_LIVER	0.38	0.42	0.1937	TRUE	267	562	48	632	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND6--MT-TE	10	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1211	0.1332	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH4_LIVER	1	1	0.2543	FALSE	499	1288	110	792	0	FALSE	ACH-000476
JHH4_LIVER	AC104389.28--HBE1	7	22	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	50	0	0.37	1	0.0848	0.2665	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JHH4_LIVER	0.37	1	0.3513	TRUE	0	35	0	55	35	FALSE	ACH-000476
JHH4_LIVER	RP11-123O10.4--GRIP1	11	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1332	0.0363	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHH4_LIVER	1	1	0.1695	FALSE	416	2512	207	587	0	FALSE	ACH-000476
JHH4_LIVER	MT-CO2--MT-CO1	8	14	MT-CO2	1282	chrM:7867:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	9	20003	0.71	0	0.0969	0.1696	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH4_LIVER	0	0.71	0.2665	FALSE	36	10	0	27	0	FALSE	ACH-000476
JHH4_LIVER	HSP90AB1--MT-RNR2	11	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2321	0	0.01	1	0.1332	0.0121	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH4_LIVER	0.01	1	0.1453	FALSE	13	9	0	364	0	FALSE	ACH-000476
JHH4_LIVER	MT-CO2--MT-CO1	7	16	MT-CO2	1345	chrM:7930:+	MT-CO1	4982	chrM:6201:+	INCL_NON_REF_SPLICE	YES	9	17966	0.72	0	0.0848	0.1938	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH4_LIVER	0	0.72	0.2786	FALSE	36	10	0	27	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND4--MT-ND4L	3	30	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	43	0	0.43	1	0.0363	0.3634	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH4_LIVER	0.43	1	0.3997	FALSE	344	826	44	306	0	FALSE	ACH-000476
JHH4_LIVER	ME3--TYR	10	1	ME3	1875	chr11:86382804:-	TYR	25842	chr11:88924370:+	ONLY_REF_SPLICE	YES	6	0	0.65	1	0.1211	0.0121	{Klijn_CCL:Liver=1},ME3->Oncogene{Bushman},chr11:86152150-86383678:-,malic_enzyme_3,TYR->chr11:88910620-89028927:+,tyrosinase	JHH4_LIVER	0.65	1	0.1332	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	MT-ND4--MT-ND4L	6	17	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	109	0	0.17	1	0.0727	0.2059	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH4_LIVER	0.17	1	0.2786	FALSE	344	827	44	306	0	FALSE	ACH-000476
JHH4_LIVER	MT-CO2--MT-CO1	6	16	MT-CO2	1345	chrM:7930:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	9	20003	0.71	0	0.0727	0.1938	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH4_LIVER	0	0.71	0.2665	FALSE	36	10	0	27	0	FALSE	ACH-000476
JHH4_LIVER	MT-CO2--MT-CO1	9	3	MT-CO2	1320	chrM:7905:+	MT-CO1	5908	chrM:7127:+	INCL_NON_REF_SPLICE	YES	9	941	0.57	0.01	0.109	0.0363	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH4_LIVER	0.01	0.57	0.1453	FALSE	36	10	0	27	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	4	23	MT-ND5	2795	chrM:14131:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0.2786	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	1	1	0.327	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	4	23	MT-ND5	2849	chrM:14185:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.96	0.0484	0.2786	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	0.96	1	0.327	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND4--MT-ND4L	4	22	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	7	0	0.79	1	0.0484	0.2665	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH4_LIVER	0.79	1	0.3149	FALSE	344	821	44	306	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	3	25	MT-ND5	2830	chrM:14166:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0.3028	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	1	1	0.3391	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	NRG1--RP11-150O12.1	6	12	NRG1	8502	chr8:32474403:+	RP11-150O12.1	37069	chr8:37289305:-	ONLY_REF_SPLICE	YES	54	0	0.25	1	0.0727	0.1453	NRG1->chr8:31496902-32622548:+,neuregulin_1,RP11-150O12.1->chr8:37278859-37411701:-	JHH4_LIVER	0.25	1	0.218	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	3	23	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0.2786	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	1	1	0.3149	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	4	18	MT-ND5	2764	chrM:14100:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.79	0.0484	0.218	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	0.79	1	0.2664	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	5	12	MT-ND5	2641	chrM:13977:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1306	11	0.01	0.61	0.0606	0.1453	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	0.01	0.61	0.2059	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	3	20	MT-ND5	2712	chrM:14048:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	69	0	0.25	1	0.0363	0.2422	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	0.25	1	0.2785	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	SLC1A5--MT-ND4L	8	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0969	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH4_LIVER	1	1	0.0969	FALSE	0	0	0	189	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	3	19	MT-ND5	2872	chrM:14208:+	MT-ATP8	5906	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.96	0.0363	0.2301	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	0.96	1	0.2664	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND6--MT-TE	4	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0484	0.1696	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH4_LIVER	0.95	1	0.218	FALSE	499	1288	110	792	0	FALSE	ACH-000476
JHH4_LIVER	RP11-307P5.1--SASH1	7	2	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	4	1	0.69	0.0848	0.0242	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	JHH4_LIVER	0.69	1	0.109	TRUE	0	2	0	37	2	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	3	17	MT-ND5	2764	chrM:14100:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	116	1	0.15	0.0363	0.2059	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	0.15	1	0.2422	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	4	13	MT-ND5	2181	chrM:13517:+	MT-ATP8	5878	chrM:8431:+	INCL_NON_REF_SPLICE	YES	2412	1	0.01	0.94	0.0484	0.1575	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	0.01	0.94	0.2059	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	MT-CO2--MT-CO1	4	12	MT-CO2	1278	chrM:7863:+	MT-CO1	5001	chrM:6220:+	INCL_NON_REF_SPLICE	YES	8	17868	0.67	0	0.0484	0.1453	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH4_LIVER	0	0.67	0.1937	FALSE	36	10	0	27	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND1--MT-TL1	5	8	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0.0969	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	JHH4_LIVER	1	1	0.1575	FALSE	210	95	5	49	0	FALSE	ACH-000476
JHH4_LIVER	MT-CO2--MT-CO1	3	14	MT-CO2	1493	chrM:8078:+	MT-CO1	5625	chrM:6844:+	INCL_NON_REF_SPLICE	YES	5	9108	0.77	0	0.0363	0.1696	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH4_LIVER	0	0.77	0.2059	FALSE	36	10	0	27	0	FALSE	ACH-000476
JHH4_LIVER	MT-CO2--MT-CO1	3	14	MT-CO2	1366	chrM:7951:+	MT-CO1	5341	chrM:6560:+	INCL_NON_REF_SPLICE	YES	10	22334	0.63	0	0.0363	0.1696	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH4_LIVER	0	0.63	0.2059	FALSE	36	10	0	27	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	3	14	MT-ND5	2851	chrM:14187:+	MT-ATP8	5954	chrM:8507:+	INCL_NON_REF_SPLICE	YES	0	1745	1	0.01	0.0363	0.1696	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	0.01	1	0.2059	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	MT-CO2--MT-CO1	3	13	MT-CO2	1286	chrM:7871:+	MT-CO1	5166	chrM:6385:+	INCL_NON_REF_SPLICE	YES	9	20311	0.64	0	0.0363	0.1575	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH4_LIVER	0	0.64	0.1938	FALSE	36	10	0	27	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND6--MT-TE	5	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0606	0.0606	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH4_LIVER	0.91	1	0.1212	FALSE	499	1288	110	792	0	FALSE	ACH-000476
JHH4_LIVER	RP11-168O22.1--PCDH15	6	1	RP11-168O22.1	3305	chr10:57125852:-	PCDH15	9774	chr10:56926411:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0727	0.0121	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	JHH4_LIVER	0.88	1	0.0848	TRUE	14	7	0	7	0	FALSE	ACH-000476
JHH4_LIVER	ADAM22--AOAH	6	0	ADAM22	7418	chr7:87737573:+	AOAH	53411	chr7:36677516:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0727	0	ADAM22->ADAM_metallopeptidase_domain_22,chr7:87563458-87832204:+,AOAH->acyloxyacyl_hydrolase,chr7:36552456-36764154:-	JHH4_LIVER	1	1	0.0727	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	MT-CO2--MT-CO1	3	12	MT-CO2	1319	chrM:7904:+	MT-CO1	5244	chrM:6463:+	INCL_NON_REF_SPLICE	YES	9	19538	0.62	0	0.0363	0.1453	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH4_LIVER	0	0.62	0.1816	FALSE	36	10	0	27	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	3	12	MT-ND5	2647	chrM:13983:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	NO	1285	11	0.01	0.58	0.0363	0.1453	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	0.01	0.58	0.1816	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	3	11	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	1172	1	0.01	0.93	0.0363	0.1332	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	0.01	0.93	0.1695	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	RP11-59N23.1--CMAS	5	2	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	4	85	0.64	0.08	0.0606	0.0242	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	JHH4_LIVER	0.08	0.64	0.0848	TRUE	21	102	17	28	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND1--MT-RNR2	4	5	MT-ND1	1482	chrM:3788:+	MT-RNR2	4976	chrM:1690:+	INCL_NON_REF_SPLICE	YES	96	0	0.09	1	0.0484	0.0606	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH4_LIVER	0.09	1	0.109	FALSE	114	26	4	85	0	FALSE	ACH-000476
JHH4_LIVER	MTATP6P1--MTND2P28	5	1	MTATP6P1	1133	chr1:569208:+	MTND2P28	4695	chr1:565033:+	INCL_NON_REF_SPLICE	YES	1521	0	0	1	0.0606	0.0121	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	JHH4_LIVER	0	1	0.0727	FALSE	20	3	0	12	0	FALSE	ACH-000476
JHH4_LIVER	RP11-96H19.1--RP11-446N19.1	2	13	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	3	2	0.83	0.88	0.0242	0.1575	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHH4_LIVER	0.83	0.88	0.1817	FALSE	467	2173	244	435	0	FALSE	ACH-000476
JHH4_LIVER	MT-CO2--MT-CO1	3	8	MT-CO2	1278	chrM:7863:+	MT-CO1	5602	chrM:6821:+	INCL_NON_REF_SPLICE	YES	8	10630	0.58	0	0.0363	0.0969	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH4_LIVER	0	0.58	0.1332	FALSE	36	10	0	27	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND1--MT-TL1	5	0	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	JHH4_LIVER	1	1	0.0606	FALSE	210	95	5	49	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	3	7	MT-ND5	2223	chrM:13559:+	MT-ATP8	5968	chrM:8521:+	INCL_NON_REF_SPLICE	YES	1713	1996	0.01	0	0.0363	0.0848	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	0	0.01	0.1211	FALSE	43	37	8	105	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND1--MT-RNR2	4	2	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	22	0	0.21	1	0.0484	0.0242	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH4_LIVER	0.21	1	0.0726	FALSE	114	26	4	85	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND1--MT-RNR2	4	2	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	21	0	0.22	1	0.0484	0.0242	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH4_LIVER	0.22	1	0.0726	FALSE	114	26	4	85	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND1--MT-TL1	3	6	MT-ND1	1342	chrM:3648:+	MT-TL1	5013	chrM:3286:+	INCL_NON_REF_SPLICE	YES	6	0	0.6	1	0.0363	0.0727	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	JHH4_LIVER	0.6	1	0.109	FALSE	210	95	5	49	0	FALSE	ACH-000476
JHH4_LIVER	RP11-344E13.3--UBBP4	3	6	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	111	0	0.07	1	0.0363	0.0727	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	JHH4_LIVER	0.07	1	0.109	TRUE	23	13	0	54	0	FALSE	ACH-000476
JHH4_LIVER	RP11-96H19.1--RP11-446N19.1	1	14	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	3	0	0.83	1	0.0121	0.1696	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHH4_LIVER	0.83	1	0.1817	FALSE	192	492	57	212	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	4	1	MT-ND5	1128	chrM:12464:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	1775	0	0	1	0.0484	0.0121	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	0	1	0.0605	FALSE	41	30	6	101	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND6--MT-TE	3	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0363	0.0606	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHH4_LIVER	0.89	1	0.0969	FALSE	499	1288	110	792	0	FALSE	ACH-000476
JHH4_LIVER	RP11-168O22.1--PCDH15	4	1	RP11-168O22.1	2183	chr10:57335410:-	PCDH15	9774	chr10:56926411:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0484	0.0121	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	JHH4_LIVER	0.71	1	0.0605	TRUE	18	36	1	9	0	FALSE	ACH-000476
JHH4_LIVER	RP11-96H19.1--RP11-446N19.1	1	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	3	0	0.82	1	0.0121	0.1575	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHH4_LIVER	0.82	1	0.1696	FALSE	275	511	55	178	0	FALSE	ACH-000476
JHH4_LIVER	USP28--DLG2	4	1	USP28	1126	chr11:113746167:-	DLG2	55116	chr11:83962334:-	ONLY_REF_SPLICE	YES	6	0	0.45	1	0.0484	0.0121	{Klijn_CCL:Liver=1},USP28->chr11:113668596-113746292:-,ubiquitin_specific_peptidase_28,DLG2->chr11:83166055-85338966:-,discs_large_homolog_2	JHH4_LIVER	0.45	1	0.0605	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	AC104389.28--HBE1	4	0	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0484	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JHH4_LIVER	1	1	0.0484	TRUE	0	11	0	26	8	FALSE	ACH-000476
JHH4_LIVER	AC104389.28--HBE1	4	0	AC104389.28	1093	chr11:5526790:-	HBE1	13750	chr11:5291386:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JHH4_LIVER	1	1	0.0484	TRUE	0	16	0	53	13	FALSE	ACH-000476
JHH4_LIVER	C15orf57--CBX3	3	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	21	28	0.25	0.2	0.0363	0.0484	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JHH4_LIVER	0.2	0.25	0.0847	TRUE	267	562	48	632	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND1--MT-TL1	3	4	MT-ND1	1263	chrM:3569:+	MT-TL1	5019	chrM:3292:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0.0484	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	JHH4_LIVER	1	1	0.0847	FALSE	210	95	5	49	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND4--MT-ND4L	4	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	JHH4_LIVER	1	1	0.0484	FALSE	344	821	44	306	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND1--MT-RNR2	3	3	MT-ND1	1465	chrM:3771:+	MT-RNR2	5529	chrM:2243:+	INCL_NON_REF_SPLICE	YES	79	11554	0.07	0	0.0363	0.0363	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH4_LIVER	0	0.07	0.0726	FALSE	120	26	5	87	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND1--MT-RNR2	3	2	MT-ND1	1296	chrM:3602:+	MT-RNR2	5569	chrM:2283:+	INCL_NON_REF_SPLICE	YES	28	12117	0.15	0	0.0363	0.0242	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH4_LIVER	0	0.15	0.0605	FALSE	120	26	5	87	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND1--MT-RNR2	3	2	MT-ND1	1272	chrM:3578:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	YES	24	0	0.17	1	0.0363	0.0242	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	JHH4_LIVER	0.17	1	0.0605	FALSE	114	26	4	85	0	FALSE	ACH-000476
JHH4_LIVER	MT-ND5--MT-ATP8	3	2	MT-ND5	1378	chrM:12714:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	3689	1	0	0.83	0.0363	0.0242	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHH4_LIVER	0	0.83	0.0605	FALSE	42	36	7	104	0	FALSE	ACH-000476
JHH4_LIVER	EEF2--MT2A	3	1	EEF2	9810	chr19:3976502:-	MT2A	13643	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	1828	1	0	0.8	0.0363	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Muscle_-_Skeletal=1},EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT2A->chr16:56642111-56643409:+,metallothionein_2A	JHH4_LIVER	0	0.8	0.0484	FALSE	1	0	0	19	0	FALSE	ACH-000476
JHH4_LIVER	GNGT1--AC002076.10	2	5	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	4	0	0.64	1	0.0242	0.0606	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	JHH4_LIVER	0.64	1	0.0848	FALSE	0	10	0	30	0	FALSE	ACH-000476
JHH4_LIVER	AC104389.28--HBE1	3	0	AC104389.28	1093	chr11:5526790:-	HBE1	12705	chr11:5303181:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JHH4_LIVER	1	1	0.0363	TRUE	0	11	0	26	8	FALSE	ACH-000476
JHH4_LIVER	ACTN4--MT-CO1	3	0	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHH4_LIVER	1	1	0.0363	FALSE	0	0	0	30	0	FALSE	ACH-000476
JHH4_LIVER	NCOR2--UBC	3	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	JHH4_LIVER	1	1	0.0363	TRUE	145	312	16	51	0	FALSE	ACH-000476
JHH4_LIVER	GNGT1--AC002076.10	2	3	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0242	0.0363	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	JHH4_LIVER	0.56	1	0.0605	FALSE	0	28	0	37	0	FALSE	ACH-000476
JHH4_LIVER	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0242	0.0121	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHH4_LIVER	0.75	1	0.0363	FALSE	292	1546	117	613	0	FALSE	ACH-000476
JHH4_LIVER	AC104389.28--HBE1	2	0	AC104389.28	2337	chr11:5368106:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	JHH4_LIVER	1	1	0.0242	TRUE	0	0	0	9	0	TRUE	ACH-000476
JHH4_LIVER	ANKS1B--GAS2L3	2	0	ANKS1B	1551	chr12:100377882:-	GAS2L3	60746	chr12:100988653:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-,GAS2L3->chr12:100967461-101022064:+,growth_arrest_specific_2_like_3	JHH4_LIVER	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	LMBRD1--FAM135A	2	0	LMBRD1	10338	chr6:70423537:-	FAM135A	37197	chr6:71232216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	LMBRD1->LMBR1_domain_containing_1,chr6:70385694-70507003:-,FAM135A->chr6:71122644-71270877:+,family_with_sequence_similarity_135_member_A	JHH4_LIVER	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	NCOR2--UBC	2	0	NCOR2	10431	chr12:124941652:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	JHH4_LIVER	1	1	0.0242	TRUE	4	3	0	2	0	FALSE	ACH-000476
JHH4_LIVER	RP13-650J16.1--TPD52L2	2	0	RP13-650J16.1	1509	chr17:79996289:+	TPD52L2	9974	chr20:62514072:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RP13-650J16.1->chr17:79995781-79997256:+,TPD52L2->chr20:62496596-62522898:+,tumor_protein_D52_like_2	JHH4_LIVER	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	TMEM135--NAALAD2	1	2	TMEM135	3570	chr11:86782657:+	NAALAD2	26291	chr11:89865262:+	ONLY_REF_SPLICE	YES	23	0	0.12	1	0.0121	0.0242	TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,NAALAD2->N-acetylated_alpha-linked_acidic_dipeptidase_2,chr11:89864683-89926062:+	JHH4_LIVER	0.12	1	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	ADAM22--CAV2	1	1	ADAM22	4172	chr7:87607727:+	CAV2	66525	chr7:116139298:+	ONLY_REF_SPLICE	NO	5	0	0.29	1	0.0121	0.0121	ADAM22->ADAM_metallopeptidase_domain_22,chr7:87563458-87832204:+,CAV2->caveolin_2,chr7:115927434-116148595:+	JHH4_LIVER	0.29	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	ADAM22--CAV2	1	1	ADAM22	4172	chr7:87607727:+	CAV2	65310	chr7:116137823:+	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0121	0.0121	ADAM22->ADAM_metallopeptidase_domain_22,chr7:87563458-87832204:+,CAV2->caveolin_2,chr7:115927434-116148595:+	JHH4_LIVER	0.29	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000476
JHH4_LIVER	ATRX--PGK1	1	1	ATRX	1235	chrX:77041468:-	PGK1	52000	chrX:77365364:+	ONLY_REF_SPLICE	YES	43	789	0.04	0	0.0121	0.0121	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1	JHH4_LIVER	0	0.04	0.0242	FALSE	0	1	0	9	0	FALSE	ACH-000476
JHH4_LIVER	AXL--TMEM138	1	1	AXL	6344	chr19:41737203:+	TMEM138	29757	chr11:61136069:+	ONLY_REF_SPLICE	YES	420	90	0	0.02	0.0121	0.0121	AXL->AXL_receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:41725108-41767671:+,TMEM138->chr11:61129473-61136981:+,transmembrane_protein_138	JHH4_LIVER	0	0.02	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000476
JHH4_LIVER	ENC1--TPM1	1	1	ENC1	2118	chr5:73936132:-	TPM1	20313	chr15:63349184:+	ONLY_REF_SPLICE	YES	108	3138	0.02	0	0.0121	0.0121	ENC1->Oncogene{Bushman},chr5:73923234-73937249:-,ectodermal-neural_cortex_1,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	JHH4_LIVER	0	0.02	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000476
JHH4_LIVER	KRIT1--ANKIB1	1	1	KRIT1	16288	chr7:91842509:-	ANKIB1	24589	chr7:91924203:+	ONLY_REF_SPLICE	YES	119	40	0.02	0.05	0.0121	0.0121	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,LOCAL_INVERSION:-:+:[68],KRIT1->KRIT1,_ankyrin_repeat_containing,chr7:91828283-91875480:-,ANKIB1->ankyrin_repeat_and_IBR_domain_containing_1,chr7:91875548-92030698:+	JHH4_LIVER	0.02	0.05	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000476
JHH4_LIVER	RP11-307P5.1--SASH1	1	1	RP11-307P5.1	4371	chr6:148054947:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	126	4	0.02	0.33	0.0121	0.0121	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	JHH4_LIVER	0.02	0.33	0.0242	TRUE	0	0	0	11	0	FALSE	ACH-000476
JHH4_LIVER	RP11-548L20.1--RP11-79E3.3	1	1	RP11-548L20.1	2265	chr4:34260709:-	RP11-79E3.3	12416	chr4:33949146:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0121	0.0121	NEIGHBORS[81001],RP11-548L20.1->chr4:34122516-34271369:-,RP11-79E3.3->chr4:33777969-34041515:-	JHH4_LIVER	0.67	1	0.0242	FALSE	2	10	2	7	0	FALSE	ACH-000476
JHH4_LIVER	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	1515	1	0	0.0121	0.0121	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	JHH4_LIVER	0	1	0.0242	FALSE	0	59	0	125	0	FALSE	ACH-000476
JHH4_LIVER	ZFYVE21--KLC1	1	1	ZFYVE21	1250	chr14:104182316:+	KLC1	34861	chr14:104166992:+	ONLY_REF_SPLICE	YES	175	31	0.01	0.06	0.0121	0.0121	GTEx_FI:{Esophagus=[count:4=pct:1.0],Brain=[count:3=pct:0.5],Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Colon=[count:1=pct:0.5],Pituitary=[count:1=pct:1.9],Breast=[count:1=pct:0.9]},GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_REARRANGEMENT:+:[14179],ZFYVE21->chr14:104182067-104200005:+,zinc_finger_FYVE-type_containing_21,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	JHH4_LIVER	0.01	0.06	0.0242	FALSE	10	10	1	10	0	FALSE	ACH-000476
KYSE270_OESOPHAGUS	ARHGAP21--ARMC4	575	231	ARHGAP21	2832	chr10:25010766:-	ARMC4	55475	chr10:28196706:-	ONLY_REF_SPLICE	YES	16	18	0.98	0.98	7.7293	3.1051	{Klijn_CCL:Head-Neck=1},ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-	KYSE270_OESOPHAGUS	0.98	0.98	10.8344	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PWP2--ASIP	589	80	PWP2	5426	chr21:45535801:+	ASIP	22984	chr20:32850638:+	ONLY_REF_SPLICE	YES	46	0	0.94	1	7.9175	1.0754	PWP2->PWP2_periodic_tryptophan_protein_homolog_(yeast),chr21:45527171-45551063:+,ASIP->agouti_signaling_protein,chr20:32782375-32857150:+	KYSE270_OESOPHAGUS	0.94	1	8.9929	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	GLG1--FA2H	287	61	GLG1	1458	chr16:74640555:-	FA2H	38262	chr16:74774013:-	ONLY_REF_SPLICE	YES	29	7	0.92	0.98	3.8579	0.82	{Klijn_CCL:Head-Neck=1,Breast=1},GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,FA2H->chr16:74746853-74808729:-,fatty_acid_2-hydroxylase	KYSE270_OESOPHAGUS	0.92	0.98	4.6779	TRUE	0	0	0	2	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	ARHGAP21--ARMC4	76	111	ARHGAP21	2832	chr10:25010766:-	ARMC4	56590	chr10:28151551:-	ONLY_REF_SPLICE	YES	16	85	0.92	0.69	1.0216	1.4921	{Klijn_CCL:Head-Neck=1},ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-	KYSE270_OESOPHAGUS	0.69	0.92	2.5137	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	ARHGAP21--ARMC4	23	234	ARHGAP21	2832	chr10:25010766:-	ARMC4	53077	chr10:28225809:-	ONLY_REF_SPLICE	YES	16	3	0.94	0.99	0.3092	3.1455	{Klijn_CCL:Head-Neck=1},ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-	KYSE270_OESOPHAGUS	0.94	0.99	3.4547	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	TIMM23B--LINC00843	66	8	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8872	0.1075	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KYSE270_OESOPHAGUS	1	1	0.9947	TRUE	508	994	45	981	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	ARHGAP21--ARMC4	9	234	ARHGAP21	2832	chr10:25010766:-	ARMC4	51966	chr10:28228936:-	ONLY_REF_SPLICE	YES	16	5	0.94	0.98	0.121	3.1455	{Klijn_CCL:Head-Neck=1},ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-	KYSE270_OESOPHAGUS	0.94	0.98	3.2665	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	RP11-344E13.3--UBBP4	52	58	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	27	1	0.8	0.99	0.699	0.7796	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	KYSE270_OESOPHAGUS	0.8	0.99	1.4786	TRUE	23	13	0	54	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	DNAJB6--UBE3C	58	16	DNAJB6	20269	chr7:157178305:+	UBE3C	54589	chr7:157023774:+	ONLY_REF_SPLICE	YES	123	40	0.38	0.65	0.7796	0.2151	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[66009],DNAJB6->DnaJ_heat_shock_protein_family_(Hsp40)_member_B6,chr7:157128075-157210133:+,UBE3C->chr7:156931607-157062066:+,ubiquitin_protein_ligase_E3C	KYSE270_OESOPHAGUS	0.38	0.65	0.9947	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	ARHGAP21--ARMC4	4	231	ARHGAP21	2831	chr10:25010767:-	ARMC4	55462	chr10:28196719:-	INCL_NON_REF_SPLICE	YES	16	19	0.94	0.93	0.0538	3.1051	{Klijn_CCL:Head-Neck=1},ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-	KYSE270_OESOPHAGUS	0.93	0.94	3.1589	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	ARHGAP21--ARMC4	3	233	ARHGAP21	2832	chr10:25010766:-	ARMC4	54232	chr10:28224181:-	ONLY_REF_SPLICE	NO	16	5	0.94	0.98	0.0403	3.132	{Klijn_CCL:Head-Neck=1},ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-	KYSE270_OESOPHAGUS	0.94	0.98	3.1723	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	ARHGAP21--ARMC4	1	231	ARHGAP21	3914	chr10:25003226:-	ARMC4	55475	chr10:28196706:-	ONLY_REF_SPLICE	YES	17	18	0.93	0.93	0.0134	3.1051	{Klijn_CCL:Head-Neck=1},ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-	KYSE270_OESOPHAGUS	0.93	0.93	3.1185	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	FAM49B--ASAP1	50	17	FAM49B	8896	chr8:130915558:-	ASAP1	68548	chr8:131073315:-	ONLY_REF_SPLICE	YES	101	30	0.4	0.69	0.6721	0.2285	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[34978],FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-	KYSE270_OESOPHAGUS	0.4	0.69	0.9006	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	MT-ND6--MT-TE	46	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6183	0.0807	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE270_OESOPHAGUS	1	1	0.699	FALSE	499	1288	110	792	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	PTK2--CASC7	42	22	PTK2	12863	chr8:141900642:-	CASC7	74121	chr8:141530787:-	INCL_NON_REF_SPLICE	YES	45	28	0.59	0.7	0.5646	0.2957	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,CASC7->cancer_susceptibility_candidate_7_(non-protein_coding),chr8:141530255-141539600:-	KYSE270_OESOPHAGUS	0.59	0.7	0.8603	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	CTD-3105H18.16--ATP13A5	40	7	CTD-3105H18.16	1171	chr19:12551726:-	ATP13A5	6615	chr3:193096664:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.5377	0.0941	CTD-3105H18.16->chr19:12502763-12551896:-,ATP13A5->ATPase_13A5,chr3:192992579-193096632:-	KYSE270_OESOPHAGUS	0.98	1	0.6318	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	TIMM23--RP11-464F9.1	41	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	146	7	0.22	0.86	0.5511	0.0134	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KYSE270_OESOPHAGUS	0.22	0.86	0.5645	TRUE	519	3926	326	965	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	ABI1--RP11-556E13.1	27	11	ABI1	3560	chr10:27112067:-	RP11-556E13.1	21048	chr10:54320875:-	ONLY_REF_SPLICE	YES	33	0	0.54	1	0.3629	0.1479	ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,RP11-556E13.1->chr10:54316462-54515169:-	KYSE270_OESOPHAGUS	0.54	1	0.5108	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	MT-ND6--MT-TE	28	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3764	0.0941	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE270_OESOPHAGUS	1	1	0.4705	FALSE	499	1288	110	792	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	SMPD4P1--VWA9	28	1	SMPD4P1	1051	chr22:21011151:-	VWA9	28169	chr15:65888163:-	ONLY_REF_SPLICE	YES	0	36	1	0.45	0.3764	0.0134	SMPD4P1->chr22:20956882-21011201:-,sphingomyelin_phosphodiesterase_4_pseudogene_1,VWA9->chr15:65871091-65903627:-,von_Willebrand_factor_A_domain_containing_9	KYSE270_OESOPHAGUS	0.45	1	0.3898	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	AC012501.2--FMNL2	23	9	AC012501.2	1429	chr2:154449373:-	FMNL2	9469	chr2:153378457:+	ONLY_REF_SPLICE	YES	0	12	1	0.73	0.3092	0.121	AC012501.2->chr2:154278130-154449801:-,FMNL2->chr2:153191751-153506348:+,formin_like_2	KYSE270_OESOPHAGUS	0.73	1	0.4302	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	MT-ND6--MT-TE	19	22	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.2554	0.2957	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE270_OESOPHAGUS	0.98	1	0.5511	FALSE	499	1288	110	792	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	APOLD1--CREBL2	22	9	APOLD1	1180	chr12:12879030:+	CREBL2	24756	chr12:12788711:+	ONLY_REF_SPLICE	YES	5	16	0.86	0.66	0.2957	0.121	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[80809],APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+,CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+	KYSE270_OESOPHAGUS	0.66	0.86	0.4167	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	RP11-680G10.1--GSE1	21	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	8	1	0.76	0.2823	0.0538	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE270_OESOPHAGUS	0.76	1	0.3361	TRUE	465	1949	224	605	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	INPP4A--TRIP13	18	0	INPP4A	1232	chr2:99061548:+	TRIP13	51000	chr5:911958:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.242	0	INPP4A->chr2:99061317-99210853:+,inositol_polyphosphate-4-phosphatase_type_I_A,TRIP13->chr5:892758-919472:+,thyroid_hormone_receptor_interactor_13	KYSE270_OESOPHAGUS	1	1	0.242	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	FHOD3--GALNT1	16	5	FHOD3	3459	chr18:33952707:+	GALNT1	56197	chr18:33289588:+	ONLY_REF_SPLICE	YES	14	149	0.6	0.12	0.2151	0.0672	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,GALNT1->chr18:33161081-33291798:+,polypeptide_N-acetylgalactosaminyltransferase_1	KYSE270_OESOPHAGUS	0.12	0.6	0.2823	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	HGSNAT--HOOK3	17	1	HGSNAT	2318	chr8:43002206:+	HOOK3	52037	chr8:42865448:+	ONLY_REF_SPLICE	YES	17	17	0.51	0.51	0.2285	0.0134	GTEx&tcga_normals:1/3694=0.03%,HGSNAT->chr8:42995556-43057998:+,heparan-alpha-glucosaminide_N-acetyltransferase,HOOK3->Oncogene{Bushman},chr8:42752075-42885682:+,hook_microtubule-tethering_protein_3	KYSE270_OESOPHAGUS	0.51	0.51	0.2419	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	RP5-857K21.11--MTATP6P1	7	35	RP5-857K21.11	1220	chr1:569975:+	MTATP6P1	4835	chr1:569363:+	INCL_NON_REF_SPLICE	YES	9	333	0.82	0.11	0.0941	0.4705	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	KYSE270_OESOPHAGUS	0.11	0.82	0.5646	TRUE	16	42	4	10	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	RP5-857K21.11--MTATP6P1	3	50	RP5-857K21.11	1468	chr1:570223:+	MTATP6P1	4541	chr1:569069:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0.6721	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	KYSE270_OESOPHAGUS	1	1	0.7124	TRUE	16	42	4	10	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	RP11-680G10.1--GSE1	13	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	4	1	0.83	0.1747	0.0941	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE270_OESOPHAGUS	0.83	1	0.2688	TRUE	458	1351	185	561	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	MT-ND6--MT-TE	5	38	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0672	0.5108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE270_OESOPHAGUS	0.98	1	0.578	FALSE	499	1288	110	792	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	MT-ND6--MT-TE	5	38	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.0672	0.5108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE270_OESOPHAGUS	0.96	1	0.578	FALSE	499	1288	110	792	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	MT-TA--MT-TC	14	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1882	0.0269	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE270_OESOPHAGUS	1	1	0.2151	FALSE	462	80	0	856	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	MTATP6P1--MT-ND1	14	0	MTATP6P1	1126	chr1:569201:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1882	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	KYSE270_OESOPHAGUS	1	1	0.1882	FALSE	16	0	0	13	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	RP5-857K21.11--MTATP6P1	5	35	RP5-857K21.11	1220	chr1:569975:+	MTATP6P1	4682	chr1:569210:+	INCL_NON_REF_SPLICE	YES	9	136	0.82	0.23	0.0672	0.4705	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	KYSE270_OESOPHAGUS	0.23	0.82	0.5377	TRUE	16	42	4	10	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	RCL1--INSL4	12	2	RCL1	3607	chr9:4827033:+	INSL4	20493	chr9:5233654:+	ONLY_REF_SPLICE	YES	22	0	0.39	1	0.1613	0.0269	RCL1->RNA_terminal_phosphate_cyclase_like_1,chr9:4792869-4885917:+,INSL4->chr9:5231419-5235304:+,insulin_like_4	KYSE270_OESOPHAGUS	0.39	1	0.1882	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	CCDC57--NOTUM	12	1	CCDC57	1046	chr17:80170661:-	NOTUM	46535	chr17:79914950:-	ONLY_REF_SPLICE	YES	0	27	1	0.33	0.1613	0.0134	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,NOTUM->NOTUM,_palmitoleoyl-protein_carboxylesterase,chr17:79910388-79919716:-	KYSE270_OESOPHAGUS	0.33	1	0.1747	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PIGU--AC097495.2	12	1	PIGU	1151	chr20:33264760:-	AC097495.2	22096	chr2:69064514:+	ONLY_REF_SPLICE	YES	56	0	0.19	1	0.1613	0.0134	PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U,AC097495.2->chr2:69059176-69064856:+	KYSE270_OESOPHAGUS	0.19	1	0.1747	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	RP5-857K21.11--MTATP6P1	3	36	RP5-857K21.11	1465	chr1:570220:+	MTATP6P1	4979	chr1:569507:+	INCL_NON_REF_SPLICE	YES	0	173	1	0.18	0.0403	0.4839	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	KYSE270_OESOPHAGUS	0.18	1	0.5242	TRUE	16	42	4	10	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	RP11-123O10.4--GRIP1	11	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1479	0.0269	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYSE270_OESOPHAGUS	1	1	0.1748	FALSE	416	2512	207	587	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	RP5-857K21.11--MTATP6P1	3	34	RP5-857K21.11	1208	chr1:569963:+	MTATP6P1	4677	chr1:569205:+	INCL_NON_REF_SPLICE	NO	13	130	0.74	0.22	0.0403	0.457	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	KYSE270_OESOPHAGUS	0.22	0.74	0.4973	TRUE	16	42	4	10	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	EDEM2--DNAH14	10	5	EDEM2	16975	chr20:33706401:-	DNAH14	93065	chr1:225492610:+	ONLY_REF_SPLICE	YES	109	0	0.12	1	0.1344	0.0672	{Klijn_CCL:Head-Neck=1},EDEM2->ER_degradation_enhancing_alpha-mannosidase_like_protein_2,chr20:33703167-33865928:-,DNAH14->chr1:225083964-225586996:+,dynein_axonemal_heavy_chain_14	KYSE270_OESOPHAGUS	0.12	1	0.2016	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PTPRA--TMC2	11	1	PTPRA	3475	chr20:2854406:+	TMC2	36862	chr20:2572956:+	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.1479	0.0134	PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A,TMC2->chr20:2517253-2622430:+,transmembrane_channel_like_2	KYSE270_OESOPHAGUS	0.8	1	0.1613	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	RP5-857K21.11--MTATP6P1	3	31	RP5-857K21.11	1220	chr1:569975:+	MTATP6P1	5052	chr1:569580:+	INCL_NON_REF_SPLICE	YES	9	75	0.79	0.31	0.0403	0.4167	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	KYSE270_OESOPHAGUS	0.31	0.79	0.457	TRUE	16	42	4	10	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	RP5-857K21.11--MTATP6P1	3	31	RP5-857K21.11	1205	chr1:569960:+	MTATP6P1	5047	chr1:569575:+	INCL_NON_REF_SPLICE	YES	13	75	0.72	0.31	0.0403	0.4167	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	KYSE270_OESOPHAGUS	0.31	0.72	0.457	TRUE	16	42	4	10	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	RP5-857K21.11--MTATP6P1	4	26	RP5-857K21.11	1090	chr1:569845:+	MTATP6P1	4813	chr1:569341:+	INCL_NON_REF_SPLICE	YES	0	408	1	0.07	0.0538	0.3495	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	KYSE270_OESOPHAGUS	0.07	1	0.4033	TRUE	16	42	4	10	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	RP5-857K21.11--MTATP6P1	4	26	RP5-857K21.11	1090	chr1:569845:+	MTATP6P1	4851	chr1:569379:+	INCL_NON_REF_SPLICE	YES	0	262	1	0.1	0.0538	0.3495	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	KYSE270_OESOPHAGUS	0.1	1	0.4033	TRUE	16	42	4	10	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	RP5-857K21.11--MTATP6P1	3	28	RP5-857K21.11	1115	chr1:569870:+	MTATP6P1	4836	chr1:569364:+	INCL_NON_REF_SPLICE	YES	9	332	0.78	0.09	0.0403	0.3764	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	KYSE270_OESOPHAGUS	0.09	0.78	0.4167	TRUE	16	42	4	10	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	PTK2--CASC7	4	22	PTK2	12863	chr8:141900642:-	CASC7	72700	chr8:141532208:-	INCL_NON_REF_SPLICE	YES	45	20	0.37	0.57	0.0538	0.2957	PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,CASC7->cancer_susceptibility_candidate_7_(non-protein_coding),chr8:141530255-141539600:-	KYSE270_OESOPHAGUS	0.37	0.57	0.3495	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	RP5-857K21.11--MTATP6P1	8	6	RP5-857K21.11	1106	chr1:569861:+	MTATP6P1	5190	chr1:569718:+	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.1075	0.0807	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	KYSE270_OESOPHAGUS	0.88	1	0.1882	TRUE	16	42	4	10	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	AURKA--CCT2	9	1	AURKA	11844	chr20:54944818:-	CCT2	23191	chr12:69990936:+	INCL_NON_REF_SPLICE	YES	115	317	0.08	0.03	0.121	0.0134	AURKA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},aurora_kinase_A,chr20:54944445-54967393:-,CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+	KYSE270_OESOPHAGUS	0.03	0.08	0.1344	TRUE	0	0	0	1	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	SLC39A11--LINC00511	7	5	SLC39A11	10819	chr17:70943891:-	LINC00511	39209	chr17:70427365:-	ONLY_REF_SPLICE	YES	15	35	0.44	0.26	0.0941	0.0672	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	KYSE270_OESOPHAGUS	0.26	0.44	0.1613	FALSE	0	3	0	4	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	ARHGAP21--ARMC4	5	12	ARHGAP21	2832	chr10:25010766:-	ARMC4	62123	chr10:28101554:-	ONLY_REF_SPLICE	YES	16	207	0.52	0.08	0.0672	0.1613	{Klijn_CCL:Head-Neck=1},ARHGAP21->Rho_GTPase_activating_protein_21,chr10:24872538-25012597:-,ARMC4->armadillo_repeat_containing_4,chr10:28064115-28287977:-	KYSE270_OESOPHAGUS	0.08	0.52	0.2285	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PACS1--OVOL1	7	4	PACS1	14012	chr11:65988718:+	OVOL1	35564	chr11:65561502:+	ONLY_REF_SPLICE	YES	48	18	0.19	0.38	0.0941	0.0538	PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1,OVOL1->chr11:65554493-65564690:+,ovo_like_zinc_finger_1	KYSE270_OESOPHAGUS	0.19	0.38	0.1479	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	SDF4--MT-ND4L	7	2	SDF4	2252	chr1:1164215:-	MT-ND4L	13838	chrM:10471:+	INCL_NON_REF_SPLICE	YES	502	0	0.02	1	0.0941	0.0269	SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE270_OESOPHAGUS	0.02	1	0.121	FALSE	0	0	0	7	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	RP5-857K21.11--MTATP6P1	5	6	RP5-857K21.11	1105	chr1:569860:+	MTATP6P1	5191	chr1:569719:+	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0672	0.0807	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	KYSE270_OESOPHAGUS	0.85	1	0.1479	TRUE	16	42	4	10	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	ALDH1A3--RP11-66B24.5	4	6	ALDH1A3	16368	chr15:101448687:+	RP11-66B24.5	24566	chr15:101368331:+	ONLY_REF_SPLICE	YES	224	0	0.04	1	0.0538	0.0807	LOCAL_REARRANGEMENT:+:[49217],ALDH1A3->aldehyde_dehydrogenase_1_family_member_A3,chr15:101417919-101456831:+,RP11-66B24.5->chr15:101256454-101368702:+	KYSE270_OESOPHAGUS	0.04	1	0.1345	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	CCAT1--CASC8	5	2	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	45	1	0.13	0.88	0.0672	0.0269	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	KYSE270_OESOPHAGUS	0.13	0.88	0.0941	TRUE	0	26	0	18	24	TRUE	ACH-000873
KYSE270_OESOPHAGUS	FAM49B--ASAP1	1	18	FAM49B	10430	chr8:130908918:-	ASAP1	68548	chr8:131073315:-	ONLY_REF_SPLICE	NO	113	30	0.14	0.39	0.0134	0.242	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[34978],FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-	KYSE270_OESOPHAGUS	0.14	0.39	0.2554	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	HYDIN--CTD-2231H16.1	5	1	HYDIN	1161	chr16:71264465:-	CTD-2231H16.1	110792	chr5:113366:+	ONLY_REF_SPLICE	YES	2	10	0.75	0.38	0.0672	0.0134	HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-,CTD-2231H16.1->chr5:92266-139978:+	KYSE270_OESOPHAGUS	0.38	0.75	0.0806	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	MTATP6P1--MT-ND1	3	9	MTATP6P1	1516	chr1:569591:+	MT-ND1	4888	chrM:3513:+	INCL_NON_REF_SPLICE	YES	1654	8491	0.01	0	0.0403	0.121	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	KYSE270_OESOPHAGUS	0	0.01	0.1613	FALSE	16	0	0	13	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	KRT5--MT-CO3	5	0	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0672	0	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	KYSE270_OESOPHAGUS	1	1	0.0672	FALSE	0	0	0	18	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0672	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE270_OESOPHAGUS	1	1	0.0672	FALSE	499	1288	110	792	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	MT-ND6--MT-TE	5	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0672	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE270_OESOPHAGUS	1	1	0.0672	FALSE	499	1288	110	792	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	MTATP6P1--MT-ND1	5	0	MTATP6P1	1111	chr1:569186:+	MT-ND1	4880	chrM:3505:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0672	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	KYSE270_OESOPHAGUS	1	1	0.0672	FALSE	16	0	0	13	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	MTATP6P1--MT-ND1	5	0	MTATP6P1	1127	chr1:569202:+	MT-ND1	5166	chrM:3791:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0672	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	KYSE270_OESOPHAGUS	1	1	0.0672	FALSE	16	0	0	13	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	SLC39A11--LINC00511	3	8	SLC39A11	10840	chr17:70943870:-	LINC00511	39209	chr17:70427365:-	ONLY_REF_SPLICE	YES	16	35	0.41	0.24	0.0403	0.1075	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	KYSE270_OESOPHAGUS	0.24	0.41	0.1478	FALSE	0	3	0	4	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	SPIDR--RP11-1134I14.8	5	0	SPIDR	7740	chr8:48206619:+	RP11-1134I14.8	40823	chr8:48103346:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0672	0	LOCAL_REARRANGEMENT:+:[68282],SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,RP11-1134I14.8->chr8:48102395-48104885:+	KYSE270_OESOPHAGUS	1	1	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	ZNF324--NEO1	5	0	ZNF324	3368	chr19:58981211:+	NEO1	17137	chr15:73468744:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0672	0	{Klijn_CCL:Head-Neck=1},ZNF324->chr19:58978423-58984945:+,zinc_finger_protein_324,NEO1->chr15:73344051-73597547:+,neogenin_1	KYSE270_OESOPHAGUS	1	1	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	MTATP6P1--MT-ND1	3	7	MTATP6P1	1346	chr1:569421:+	MT-ND1	4767	chrM:3392:+	INCL_NON_REF_SPLICE	YES	1680	4	0.01	0.71	0.0403	0.0941	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	KYSE270_OESOPHAGUS	0.01	0.71	0.1344	FALSE	16	0	0	13	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	MT-TA--MT-TC	4	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0.0269	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE270_OESOPHAGUS	1	1	0.0807	FALSE	462	80	0	856	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	MT-TA--MT-TC	4	2	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0.0269	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE270_OESOPHAGUS	1	1	0.0807	FALSE	462	80	0	856	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	TLK1--METTL8	4	2	TLK1	7437	chr2:171974249:-	METTL8	47363	chr2:172188377:-	ONLY_REF_SPLICE	YES	11	13	0.35	0.32	0.0538	0.0269	LOCAL_REARRANGEMENT:-:[86095],TLK1->chr2:171847333-172087824:-,tousled_like_kinase_1,METTL8->chr2:172173919-172291312:-,methyltransferase_like_8	KYSE270_OESOPHAGUS	0.32	0.35	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	LRP12--DPYS	4	1	LRP12	1206	chr8:105601047:-	DPYS	31942	chr8:105393542:-	ONLY_REF_SPLICE	YES	15	0	0.25	1	0.0538	0.0134	NEIGHBORS[22178],LRP12->LDL_receptor_related_protein_12,chr8:105501459-105601252:-,DPYS->chr8:105342552-105479281:-,dihydropyrimidinase	KYSE270_OESOPHAGUS	0.25	1	0.0672	FALSE	0	0	0	1	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	XPR1--RP11-522D2.1	4	1	XPR1	2319	chr1:180651547:+	RP11-522D2.1	27467	chr1:180531340:+	ONLY_REF_SPLICE	YES	64	0	0.07	1	0.0538	0.0134	LOCAL_REARRANGEMENT:+:[65486],XPR1->chr1:180601140-180859387:+,xenotropic_and_polytropic_retrovirus_receptor_1,RP11-522D2.1->chr1:180528112-180535654:+	KYSE270_OESOPHAGUS	0.07	1	0.0672	TRUE	0	8	0	2	8	TRUE	ACH-000873
KYSE270_OESOPHAGUS	FAM49B--ASAP1	1	12	FAM49B	5614	chr8:130951854:-	ASAP1	68548	chr8:131073315:-	ONLY_REF_SPLICE	YES	130	30	0.09	0.3	0.0134	0.1613	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[34978],FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-	KYSE270_OESOPHAGUS	0.09	0.3	0.1747	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	INPP4A--TRIP13	4	0	INPP4A	1232	chr2:99061548:+	TRIP13	52154	chr5:914580:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0538	0	INPP4A->chr2:99061317-99210853:+,inositol_polyphosphate-4-phosphatase_type_I_A,TRIP13->chr5:892758-919472:+,thyroid_hormone_receptor_interactor_13	KYSE270_OESOPHAGUS	1	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	MT-ND6--MT-TE	4	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE270_OESOPHAGUS	1	1	0.0538	FALSE	499	1288	110	792	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	RP5-857K21.11--MTATP6P1	4	0	RP5-857K21.11	1028	chr1:569783:+	MTATP6P1	5197	chr1:569725:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0538	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	KYSE270_OESOPHAGUS	1	1	0.0538	TRUE	16	42	4	10	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	RPSAP52--HMGA2	4	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0538	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	KYSE270_OESOPHAGUS	1	1	0.0538	FALSE	0	59	0	125	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	UQCC1--FER1L4	4	0	UQCC1	1202	chr20:33999743:-	FER1L4	49805	chr20:34147394:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0538	0	UQCC1->chr20:33890369-33999944:-,ubiquinol-cytochrome_c_reductase_complex_assembly_factor_1,FER1L4->chr20:34146507-34195484:-,fer-1_like_family_member_4,_pseudogene	KYSE270_OESOPHAGUS	1	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PCBP3--AP001048.4	3	2	PCBP3	16041	chr21:47270009:+	AP001048.4	40350	chr21:44886938:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0403	0.0269	PCBP3->chr21:47063608-47362368:+,poly(rC)_binding_protein_3,AP001048.4->chr21:44885189-44887178:+	KYSE270_OESOPHAGUS	0.83	1	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	SLC39A11--LINC00511	3	2	SLC39A11	10840	chr17:70943870:-	LINC00511	40306	chr17:70424439:-	ONLY_REF_SPLICE	YES	16	39	0.24	0.11	0.0403	0.0269	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	KYSE270_OESOPHAGUS	0.11	0.24	0.0672	FALSE	0	2	0	3	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	AMBRA1--CKAP5	3	1	AMBRA1	13434	chr11:46529741:-	CKAP5	56531	chr11:46792532:-	ONLY_REF_SPLICE	YES	16	60	0.2	0.06	0.0403	0.0134	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5	KYSE270_OESOPHAGUS	0.06	0.2	0.0537	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	APOLD1--CREBL2	1	9	APOLD1	1457	chr12:12879307:+	CREBL2	24756	chr12:12788711:+	ONLY_REF_SPLICE	YES	4	16	0.71	0.38	0.0134	0.121	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[80809],APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+,CREBL2->cAMP_responsive_element_binding_protein_like_2,chr12:12764761-12798042:+	KYSE270_OESOPHAGUS	0.38	0.71	0.1344	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	RP5-857K21.11--MTATP6P1	3	1	RP5-857K21.11	1182	chr1:569937:+	MTATP6P1	5220	chr1:569748:+	INCL_NON_REF_SPLICE	YES	14	0	0.22	1	0.0403	0.0134	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	KYSE270_OESOPHAGUS	0.22	1	0.0537	TRUE	16	42	4	10	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	SMPD4P1--VWA9	3	1	SMPD4P1	1051	chr22:21011151:-	VWA9	29262	chr15:65885910:-	ONLY_REF_SPLICE	YES	0	38	1	0.1	0.0403	0.0134	SMPD4P1->chr22:20956882-21011201:-,sphingomyelin_phosphodiesterase_4_pseudogene_1,VWA9->chr15:65871091-65903627:-,von_Willebrand_factor_A_domain_containing_9	KYSE270_OESOPHAGUS	0.1	1	0.0537	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	FHOD3--GALNT1	2	4	FHOD3	2394	chr18:33935608:+	GALNT1	56197	chr18:33289588:+	ONLY_REF_SPLICE	YES	12	149	0.33	0.04	0.0269	0.0538	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,GALNT1->chr18:33161081-33291798:+,polypeptide_N-acetylgalactosaminyltransferase_1	KYSE270_OESOPHAGUS	0.04	0.33	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE270_OESOPHAGUS	1	1	0.0403	FALSE	499	1288	110	792	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE270_OESOPHAGUS	1	1	0.0403	FALSE	499	1288	110	792	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	PACS1--OVOL1	2	4	PACS1	13556	chr11:65988262:+	OVOL1	35564	chr11:65561502:+	ONLY_REF_SPLICE	YES	44	18	0.12	0.25	0.0269	0.0538	PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1,OVOL1->chr11:65554493-65564690:+,ovo_like_zinc_finger_1	KYSE270_OESOPHAGUS	0.12	0.25	0.0807	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	RP5-857K21.11--MTATP6P1	3	0	RP5-857K21.11	1075	chr1:569830:+	MTATP6P1	5225	chr1:569753:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	KYSE270_OESOPHAGUS	1	1	0.0403	TRUE	16	42	4	10	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	CTD-3105H18.16--ATP13A5	2	3	CTD-3105H18.16	1171	chr19:12551726:-	ATP13A5	8894	chr3:193082069:-	ONLY_REF_SPLICE	YES	1	8	0.83	0.38	0.0269	0.0403	CTD-3105H18.16->chr19:12502763-12551896:-,ATP13A5->ATPase_13A5,chr3:192992579-193096632:-	KYSE270_OESOPHAGUS	0.38	0.83	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	SVIL--BTRC	2	3	SVIL	23475	chr10:29811339:-	BTRC	60613	chr10:103285770:+	ONLY_REF_SPLICE	YES	49	9	0.09	0.36	0.0269	0.0403	SVIL->chr10:29746267-30025710:-,supervillin,BTRC->Oncogene{Bushman},beta-transducin_repeat_containing_E3_ubiquitin_protein_ligase,chr10:103113820-103317078:+	KYSE270_OESOPHAGUS	0.09	0.36	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	TVP23C--CDRT1	2	2	TVP23C	14926	chr17:15406412:-	CDRT1	35280	chr17:15469667:-	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0269	0.0269	LOCAL_INVERSION:-:-,chr17:[1888],TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae),CDRT1->CMT1A_duplicated_region_transcript_1,chr17:15468797-15469590:-,chr17:15468798-15522826:-	KYSE270_OESOPHAGUS	0.18	1	0.0538	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	AC002066.1--AC073130.1	2	1	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0269	0.0134	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	KYSE270_OESOPHAGUS	0.75	1	0.0403	FALSE	0	1	1	30	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	BAZ2A--PTGES3	2	1	BAZ2A	3376	chr12:57023909:-	PTGES3	32210	chr12:57060050:-	ONLY_REF_SPLICE	YES	12	654	0.2	0	0.0269	0.0134	LOCAL_REARRANGEMENT:-:[26527],BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3	KYSE270_OESOPHAGUS	0	0.2	0.0403	FALSE	0	1	0	1	1	FALSE	ACH-000873
KYSE270_OESOPHAGUS	C19orf44--CACNA1A	2	1	C19orf44	8169	chr19:16620799:+	CACNA1A	40141	chr19:13411470:-	ONLY_REF_SPLICE	YES	2	1	0.6	0.75	0.0269	0.0134	C19orf44->chr19:16607122-16632163:+,chromosome_19_open_reading_frame_44,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	KYSE270_OESOPHAGUS	0.6	0.75	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	FARP2--ANO7	2	1	FARP2	2877	chr2:242312705:+	ANO7	53669	chr2:242141609:+	ONLY_REF_SPLICE	YES	15	0	0.17	1	0.0269	0.0134	FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+,ANO7->anoctamin_7,chr2:242127924-242164792:+	KYSE270_OESOPHAGUS	0.17	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	LINC00511--SLC39A11	2	1	LINC00511	8867	chr17:70588342:-	SLC39A11	49102	chr17:70732858:-	ONLY_REF_SPLICE	YES	36	11	0.08	0.21	0.0269	0.0134	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	KYSE270_OESOPHAGUS	0.08	0.21	0.0403	TRUE	0	5	0	7	4	TRUE	ACH-000873
KYSE270_OESOPHAGUS	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	16236	chr16:85696587:+	ONLY_REF_SPLICE	YES	0	26	1	0.1	0.0269	0.0134	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE270_OESOPHAGUS	0.1	1	0.0403	TRUE	0	0	0	1	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	AGO2--PTK2	2	0	AGO2	21292	chr8:141545567:-	PTK2	71506	chr8:141716304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[22281],AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	BAZ2A--PTGES3	2	0	BAZ2A	1635	chr12:57029966:-	PTGES3	32210	chr12:57060050:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:-:[26527],BAZ2A->bromodomain_adjacent_to_zinc_finger_domain_2A,chr12:56989380-57030600:-,PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	C1orf21--C20orf203	2	0	C1orf21	1311	chr1:184356502:+	C20orf203	27160	chr20:31239783:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	C1orf21->chr1:184356192-184598154:+,chromosome_1_open_reading_frame_21,C20orf203->chr20:31219428-31261743:-,chromosome_20_open_reading_frame_203	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	CNBP--RUVBL1	2	0	CNBP	1147	chr3:128902619:-	RUVBL1	18114	chr3:127806651:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	CNBP->CCHC-type_zinc_finger_nucleic_acid_binding_protein,chr3:128888327-128902765:-,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	NBAS--SYVN1	2	0	NBAS	21960	chr2:15601325:-	SYVN1	66072	chr11:64898844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,SYVN1->chr11:64889252-64902004:-,synoviolin_1	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PTPRA--TMC2	2	0	PTPRA	3475	chr20:2854406:+	TMC2	40252	chr20:2582759:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A,TMC2->chr20:2517253-2622430:+,transmembrane_channel_like_2	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	PTPRA--TMC2	2	0	PTPRA	3475	chr20:2854406:+	TMC2	41441	chr20:2591065:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A,TMC2->chr20:2517253-2622430:+,transmembrane_channel_like_2	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	RCC1--LARP4	2	0	RCC1	2175	chr1:28834672:+	LARP4	36880	chr12:50854918:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	1	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	TOX3--C9orf3	2	0	TOX3	6771	chr16:52497846:-	C9orf3	53744	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	TOX3->TOX_high_mobility_group_box_family_member_3,chr16:52471917-52581714:-,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	KYSE270_OESOPHAGUS	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	CTD-3105H18.16--ATP13A5	1	2	CTD-3105H18.16	1171	chr19:12551726:-	ATP13A5	9792	chr3:193081171:-	ONLY_REF_SPLICE	NO	1	16	0.75	0.16	0.0134	0.0269	CTD-3105H18.16->chr19:12502763-12551896:-,ATP13A5->ATPase_13A5,chr3:192992579-193096632:-	KYSE270_OESOPHAGUS	0.16	0.75	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0134	0.0269	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYSE270_OESOPHAGUS	1	1	0.0403	FALSE	93	270	15	244	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	TVP23C--CDRT1	1	2	TVP23C	6853	chr17:15449099:-	CDRT1	35280	chr17:15469667:-	ONLY_REF_SPLICE	YES	90	0	0.03	1	0.0134	0.0269	LOCAL_INVERSION:-:-,chr17:[1888],TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae),CDRT1->CMT1A_duplicated_region_transcript_1,chr17:15468797-15469590:-,chr17:15468798-15522826:-	KYSE270_OESOPHAGUS	0.03	1	0.0403	TRUE	0	0	0	1	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	TVP23C--CDRT1	1	2	TVP23C	12676	chr17:15419733:-	CDRT1	35280	chr17:15469667:-	ONLY_REF_SPLICE	YES	19	0	0.14	1	0.0134	0.0269	LOCAL_INVERSION:-:-,chr17:[1888],TVP23C->chr17:15341205-15466909:-,trans-golgi_network_vesicle_protein_23_homolog_C_(S._cerevisiae),CDRT1->CMT1A_duplicated_region_transcript_1,chr17:15468797-15469590:-,chr17:15468798-15522826:-	KYSE270_OESOPHAGUS	0.14	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	BASP1--MYO10	1	1	BASP1	4506	chr5:17217919:+	MYO10	15341	chr5:16815572:-	ONLY_REF_SPLICE	YES	318	83	0.01	0.02	0.0134	0.0134	BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+,MYO10->chr5:16665395-16936372:-,myosin_X	KYSE270_OESOPHAGUS	0.01	0.02	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	GFOD2--SRP9	1	1	GFOD2	1259	chr16:67753066:-	SRP9	14747	chr1:225965637:+	ONLY_REF_SPLICE	YES	29	21	0.06	0.09	0.0134	0.0134	GFOD2->chr16:67708434-67753324:-,glucose-fructose_oxidoreductase_domain_containing_2,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	KYSE270_OESOPHAGUS	0.06	0.09	0.0268	TRUE	0	0	0	1	0	FALSE	ACH-000873
KYSE270_OESOPHAGUS	PTPRA--TMC2	1	1	PTPRA	3475	chr20:2854406:+	TMC2	37961	chr20:2575471:+	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0134	0.0134	PTPRA->chr20:2844830-3019722:+,protein_tyrosine_phosphatase,_receptor_type_A,TMC2->chr20:2517253-2622430:+,transmembrane_channel_like_2	KYSE270_OESOPHAGUS	0.4	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000873
KYSE270_OESOPHAGUS	SLC39A11--LINC00511	1	1	SLC39A11	10819	chr17:70943891:-	LINC00511	40306	chr17:70424439:-	ONLY_REF_SPLICE	NO	15	39	0.12	0.05	0.0134	0.0134	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	KYSE270_OESOPHAGUS	0.05	0.12	0.0268	FALSE	0	2	0	3	0	FALSE	ACH-000873
NCIH82_LUNG	PVT1--CASC8	322	348	PVT1	1202	chr8:128806980:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	336	27	0.67	0.96	4.3455	4.6964	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH82_LUNG	0.67	0.96	9.0419	TRUE	0	2	0	5	2	TRUE	ACH-000355
NCIH82_LUNG	PVT1--MYH7	327	268	PVT1	1202	chr8:128806980:+	MYH7	49555	chr14:23883102:-	ONLY_REF_SPLICE	YES	336	12	0.64	0.98	4.413	3.6168	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	NCIH82_LUNG	0.64	0.98	8.0298	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--MYH7	111	372	PVT1	1202	chr8:128806980:+	MYH7	49346	chr14:23883311:-	ONLY_REF_SPLICE	YES	336	0	0.59	1	1.498	5.0203	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	NCIH82_LUNG	0.59	1	6.5183	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	SUPT6H--MYH10	152	30	SUPT6H	1252	chr17:26989360:+	MYH10	40576	chr17:8457336:-	ONLY_REF_SPLICE	YES	86	115	0.68	0.61	2.0513	0.4049	SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+,MYH10->chr17:8377523-8534079:-,myosin,_heavy_chain_10,_non-muscle	NCIH82_LUNG	0.61	0.68	2.4562	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--CASC8	51	363	PVT1	2457	chr8:128808254:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	78	27	0.84	0.94	0.6883	4.8988	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH82_LUNG	0.84	0.94	5.5871	TRUE	0	1	0	4	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--CASC8	39	386	PVT1	1202	chr8:128806980:+	CASC8	34291	chr8:128433208:-	ONLY_REF_SPLICE	YES	336	2	0.56	1	0.5263	5.2092	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH82_LUNG	0.56	1	5.7355	TRUE	0	1	0	2	1	TRUE	ACH-000355
NCIH82_LUNG	PVT1--CASC8	37	372	PVT1	2520	chr8:128808317:+	CASC8	36566	chr8:128302305:-	ONLY_REF_SPLICE	YES	57	27	0.88	0.94	0.4993	5.0203	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH82_LUNG	0.88	0.94	5.5196	TRUE	0	1	0	4	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--MYH7	27	397	PVT1	2520	chr8:128808317:+	MYH7	49346	chr14:23883311:-	ONLY_REF_SPLICE	YES	57	0	0.88	1	0.3644	5.3577	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	NCIH82_LUNG	0.88	1	5.7221	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--MYH7	22	390	PVT1	2457	chr8:128808254:+	MYH7	49346	chr14:23883311:-	ONLY_REF_SPLICE	YES	78	0	0.84	1	0.2969	5.2632	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	NCIH82_LUNG	0.84	1	5.5601	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--CASC8	1	411	PVT1	2520	chr8:128808317:+	CASC8	34291	chr8:128433208:-	ONLY_REF_SPLICE	NO	57	2	0.88	1	0.0135	5.5466	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH82_LUNG	0.88	1	5.5601	TRUE	0	1	0	1	1	TRUE	ACH-000355
NCIH82_LUNG	PVT1--CASC8	1	402	PVT1	2457	chr8:128808254:+	CASC8	34291	chr8:128433208:-	ONLY_REF_SPLICE	YES	78	2	0.84	1	0.0135	5.4251	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH82_LUNG	0.84	1	5.4386	TRUE	0	1	0	1	1	TRUE	ACH-000355
NCIH82_LUNG	PVT1--MYH7	1	397	PVT1	3930	chr8:128815805:+	MYH7	49346	chr14:23883311:-	ONLY_REF_SPLICE	YES	57	0	0.87	1	0.0135	5.3577	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	NCIH82_LUNG	0.87	1	5.3712	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--MYH7	7	373	PVT1	1202	chr8:128806980:+	MYH7	49338	chr14:23883319:-	INCL_NON_REF_SPLICE	YES	336	0	0.53	1	0.0945	5.0338	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	NCIH82_LUNG	0.53	1	5.1283	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--CASC8	3	354	PVT1	1202	chr8:128806980:+	CASC8	35426	chr8:128335399:-	ONLY_REF_SPLICE	YES	336	14	0.52	0.96	0.0405	4.7774	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH82_LUNG	0.52	0.96	4.8179	TRUE	0	0	0	5	0	TRUE	ACH-000355
NCIH82_LUNG	PVT1--MYH7	20	278	PVT1	2457	chr8:128808254:+	MYH7	49555	chr14:23883102:-	ONLY_REF_SPLICE	YES	78	12	0.79	0.96	0.2699	3.7517	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	NCIH82_LUNG	0.79	0.96	4.0216	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	TIMM23B--LINC00843	79	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0661	0.4319	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH82_LUNG	1	1	1.498	TRUE	508	994	45	981	0	FALSE	ACH-000355
NCIH82_LUNG	TFG--GPR128	75	42	TFG	5019	chr3:100438902:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	303	0	0.28	1	1.0122	0.5668	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	NCIH82_LUNG	0.28	1	1.579	TRUE	12	123	7	17	0	FALSE	ACH-000355
NCIH82_LUNG	PVT1--MYH7	5	282	PVT1	2520	chr8:128808317:+	MYH7	49555	chr14:23883102:-	ONLY_REF_SPLICE	YES	57	12	0.83	0.96	0.0675	3.8057	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	NCIH82_LUNG	0.83	0.96	3.8732	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PSEN1--CASC11	63	33	PSEN1	12660	chr14:73640415:+	CASC11	30138	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	101	0	0.49	1	0.8502	0.4453	PSEN1->chr14:73603126-73690399:+,presenilin_1,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NCIH82_LUNG	0.49	1	1.2955	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	LTBP2--CASC8	53	25	LTBP2	3224	chr14:75070338:-	CASC8	45038	chr8:128302305:-	ONLY_REF_SPLICE	YES	0	27	1	0.74	0.7153	0.3374	LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	NCIH82_LUNG	0.74	1	1.0527	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RBM25--PAPLN	44	45	RBM25	1270	chr14:73525413:+	PAPLN	50403	chr14:73739203:+	ONLY_REF_SPLICE	YES	164	32	0.35	0.74	0.5938	0.6073	RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	NCIH82_LUNG	0.35	0.74	1.2011	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RP4-647C14.3--RP11-109N23.4	44	44	RP4-647C14.3	2557	chr14:73739203:-	RP11-109N23.4	6581	chr14:73525413:-	INCL_NON_REF_SPLICE	YES	7	1	0.93	0.99	0.5938	0.5938	RP4-647C14.3->chr14:73738890-73740789:-,RP11-109N23.4->chr14:73525139-73526123:-	NCIH82_LUNG	0.93	0.99	1.1876	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	TIMM23--RP11-464F9.1	53	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	293	4	0.16	0.93	0.7153	0.0135	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH82_LUNG	0.16	0.93	0.7288	TRUE	519	3926	326	965	0	FALSE	ACH-000355
NCIH82_LUNG	SLC22A17--CASC11	45	26	SLC22A17	7001	chr14:23815965:-	CASC11	11595	chr8:128743168:-	INCL_NON_REF_SPLICE	YES	118	13	0.38	0.85	0.6073	0.3509	SLC22A17->chr14:23815515-23822121:-,solute_carrier_family_22_member_17,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NCIH82_LUNG	0.38	0.85	0.9582	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RBM25--PAPLN	28	63	RBM25	1270	chr14:73525413:+	PAPLN	49189	chr14:73735218:+	INCL_NON_REF_SPLICE	YES	164	17	0.36	0.84	0.3779	0.8502	RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	NCIH82_LUNG	0.36	0.84	1.2281	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	TPD52L1--PARVA	35	33	TPD52L1	2662	chr6:125475116:+	PARVA	31386	chr11:12518005:+	ONLY_REF_SPLICE	YES	325	59	0.17	0.54	0.4723	0.4453	{Klijn_CCL:Lung=1},TPD52L1->chr6:125440195-125585553:+,tumor_protein_D52-like_1,PARVA->chr11:12398732-12552348:+,parvin_alpha	NCIH82_LUNG	0.17	0.54	0.9176	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PAPLN--PSEN1	38	19	PAPLN	24088	chr14:73741167:+	PSEN1	32459	chr14:73614503:+	INCL_NON_REF_SPLICE	YES	10	47	0.85	0.55	0.5128	0.2564	LOCAL_REARRANGEMENT:+:[13806],PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein,PSEN1->chr14:73603126-73690399:+,presenilin_1	NCIH82_LUNG	0.55	0.85	0.7692	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	DACH2--HDAC8	34	22	DACH2	1651	chrX:85404112:+	HDAC8	40354	chrX:71571688:-	ONLY_REF_SPLICE	YES	75	38	0.43	0.6	0.4588	0.2969	DACH2->Oncogene{Bushman},chrX:85403462-86087607:+,dachshund_family_transcription_factor_2,HDAC8->chrX:71549366-71792953:-,histone_deacetylase_8	NCIH82_LUNG	0.43	0.6	0.7557	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RP11-444D3.1--SOX5	32	8	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	7	1	0.85	0.4319	0.108	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH82_LUNG	0.85	1	0.5399	TRUE	477	1352	189	275	0	FALSE	ACH-000355
NCIH82_LUNG	MT-TA--MT-TC	31	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4184	0.0675	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH82_LUNG	1	1	0.4859	FALSE	462	80	0	856	0	FALSE	ACH-000355
NCIH82_LUNG	PPP4R1--AP005530.2	27	18	PPP4R1	2015	chr18:9614224:-	AP005530.2	29664	chr18:16898:-	ONLY_REF_SPLICE	YES	22	0	0.67	1	0.3644	0.2429	PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,AP005530.2->chr18:14195-16898:-	NCIH82_LUNG	0.67	1	0.6073	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RBM25--PAPLN	9	58	RBM25	1270	chr14:73525413:+	PAPLN	49236	chr14:73735265:+	ONLY_REF_SPLICE	YES	164	17	0.29	0.8	0.1215	0.7827	RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	NCIH82_LUNG	0.29	0.8	0.9042	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RP11-680G10.1--GSE1	19	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	19	1	0.55	0.2564	0.054	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH82_LUNG	0.55	1	0.3104	TRUE	458	1351	185	561	0	FALSE	ACH-000355
NCIH82_LUNG	ZNF654--HMGB2	19	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2564	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH82_LUNG	1	1	0.2564	TRUE	0	0	0	518	0	FALSE	ACH-000355
NCIH82_LUNG	PLXDC1--TAF13	18	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2429	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH82_LUNG	1	1	0.2429	TRUE	7	10	0	216	0	FALSE	ACH-000355
NCIH82_LUNG	MTX2--AC017048.4	16	4	MTX2	4061	chr2:177162623:+	AC017048.4	16379	chr2:177504219:+	ONLY_REF_SPLICE	YES	92	0	0.18	1	0.2159	0.054	MTX2->chr2:177134123-177202753:+,metaxin_2,AC017048.4->chr2:177502438-177520686:+	NCIH82_LUNG	0.18	1	0.2699	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RBM25--PAPLN	1	58	RBM25	1376	chr14:73525519:+	PAPLN	49236	chr14:73735265:+	ONLY_REF_SPLICE	YES	175	17	0.25	0.78	0.0135	0.7827	RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+,PAPLN->chr14:73704205-73741348:+,papilin,_proteoglycan-like_sulfated_glycoprotein	NCIH82_LUNG	0.25	0.78	0.7962	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	SLC35F4--RP11-382A18.2	12	9	SLC35F4	3829	chr14:58332441:-	RP11-382A18.2	22846	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	10	0	0.68	1	0.1619	0.1215	SLC35F4->chr14:58030640-58448912:-,solute_carrier_family_35_member_F4,RP11-382A18.2->chr8:128351519-128404876:+	NCIH82_LUNG	0.68	1	0.2834	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	SLC22A17--CASC11	11	10	SLC22A17	6656	chr14:23816310:-	CASC11	11595	chr8:128743168:-	ONLY_REF_SPLICE	YES	165	13	0.11	0.62	0.1484	0.135	SLC22A17->chr14:23815515-23822121:-,solute_carrier_family_22_member_17,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NCIH82_LUNG	0.11	0.62	0.2834	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	HSP90AB1--MT-RNR2	10	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4732	0	0	1	0.135	0.027	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH82_LUNG	0	1	0.162	FALSE	13	9	0	364	0	FALSE	ACH-000355
NCIH82_LUNG	MT-ND6--MT-TE	9	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.1215	0.0135	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH82_LUNG	0.91	1	0.135	FALSE	499	1288	110	792	0	FALSE	ACH-000355
NCIH82_LUNG	UBR1--EPB42	9	0	UBR1	1172	chr15:43398140:-	EPB42	73129	chr15:43423340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1215	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},LOCAL_REARRANGEMENT:-:[112],UBR1->chr15:43235095-43398311:-,ubiquitin_protein_ligase_E3_component_n-recognin_1,EPB42->chr15:43398423-43513481:-,erythrocyte_membrane_protein_band_4.2	NCIH82_LUNG	1	1	0.1215	TRUE	0	1	0	1	1	TRUE	ACH-000355
NCIH82_LUNG	MT-ND6--MT-TE	8	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.108	0.0135	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH82_LUNG	0.9	1	0.1215	FALSE	499	1288	110	792	0	FALSE	ACH-000355
NCIH82_LUNG	USP14--RP11-78F17.1	8	1	USP14	13593	chr18:204692:+	RP11-78F17.1	25973	chr18:1133844:+	ONLY_REF_SPLICE	YES	238	1	0.04	0.9	0.108	0.0135	USP14->chr18:158383-214629:+,ubiquitin_specific_peptidase_14,RP11-78F17.1->chr18:976590-1174824:+	NCIH82_LUNG	0.04	0.9	0.1215	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RP11-408A13.2--NFIB	7	4	RP11-408A13.2	1096	chr9:14531945:-	NFIB	9580	chr9:14307519:-	INCL_NON_REF_SPLICE	YES	0	101	1	0.1	0.0945	0.054	RP11-408A13.2->chr9:14531914-14532040:-,NFIB->Oncogene{Bushman},chr9:14081842-14398982:-,nuclear_factor_I_B	NCIH82_LUNG	0.1	1	0.1485	TRUE	0	14	0	20	14	FALSE	ACH-000355
NCIH82_LUNG	MT-ND6--MT-TE	6	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.081	0.0405	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH82_LUNG	0.82	1	0.1215	FALSE	499	1288	110	792	0	FALSE	ACH-000355
NCIH82_LUNG	RP11-120D5.1--MID1	6	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	19	0.69	0.32	0.081	0.0405	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH82_LUNG	0.32	0.69	0.1215	FALSE	16	356	14	466	0	FALSE	ACH-000355
NCIH82_LUNG	RP11-319G9.5--WWOX	6	2	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	9	1	0.47	0.081	0.027	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	NCIH82_LUNG	0.47	1	0.108	FALSE	154	425	28	76	0	FALSE	ACH-000355
NCIH82_LUNG	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.081	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH82_LUNG	1	1	0.081	TRUE	465	1949	224	605	0	FALSE	ACH-000355
NCIH82_LUNG	MT-ND6--MT-TE	4	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.054	0.0675	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH82_LUNG	0.9	1	0.1215	FALSE	499	1288	110	792	0	FALSE	ACH-000355
NCIH82_LUNG	PPM1E--TRIM37	5	1	PPM1E	6895	chr17:57050286:+	TRIM37	43743	chr17:57060282:-	ONLY_REF_SPLICE	YES	51	2	0.11	0.75	0.0675	0.0135	LOCAL_INVERSION:+:-:[1016],PPM1E->Oncogene{Bushman},chr17:56833230-57058983:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1E,TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37	NCIH82_LUNG	0.11	0.75	0.081	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	TSEN34--ZFP14	5	1	TSEN34	1513	chr19:54694301:+	ZFP14	11055	chr19:36851435:-	ONLY_REF_SPLICE	YES	15	9	0.29	0.4	0.0675	0.0135	TSEN34->chr19:54693789-54697585:+,tRNA_splicing_endonuclease_subunit_34,ZFP14->ZFP14_zinc_finger_protein,chr19:36827162-36870101:-	NCIH82_LUNG	0.29	0.4	0.081	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0675	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH82_LUNG	1	1	0.0675	FALSE	230	198	14	283	0	FALSE	ACH-000355
NCIH82_LUNG	SLC7A8--TRAV6	5	0	SLC7A8	1911	chr14:23651973:-	TRAV6	22404	chr14:22237033:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0675	0	SLC7A8->chr14:23594504-23652883:-,solute_carrier_family_7_member_8,TRAV6->T_cell_receptor_alpha_variable_6,chr14:22236729-22237320:+	NCIH82_LUNG	1	1	0.0675	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	1875	chrM:11634:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	9706	0	0	1	0.0405	0.0945	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH82_LUNG	0	1	0.135	FALSE	231	217	16	283	0	FALSE	ACH-000355
NCIH82_LUNG	PPP4R1--AP005530.2	1	15	PPP4R1	2015	chr18:9614224:-	AP005530.2	31012	chr18:14653:-	ONLY_REF_SPLICE	YES	22	0	0.42	1	0.0135	0.2024	PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,AP005530.2->chr18:14195-16898:-	NCIH82_LUNG	0.42	1	0.2159	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	ASH1L--QSER1	3	4	ASH1L	33742	chr1:155307880:-	QSER1	48566	chr11:32975403:+	ONLY_REF_SPLICE	YES	56	44	0.11	0.14	0.0405	0.054	{Klijn_CCL:Lung=1},ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-,QSER1->chr11:32914724-33014862:+,glutamine_and_serine_rich_1	NCIH82_LUNG	0.11	0.14	0.0945	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	MACROD1--GNAS	4	0	MACROD1	3565	chr11:63918711:-	GNAS	29718	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.054	0	MACROD1->MACRO_domain_containing_1,Oncogene{Bushman},chr11:63766030-63933578:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH82_LUNG	1	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.054	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH82_LUNG	1	1	0.054	FALSE	230	193	14	283	0	FALSE	ACH-000355
NCIH82_LUNG	MT-ND6--MT-TE	3	4	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0405	0.054	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH82_LUNG	0.78	1	0.0945	FALSE	499	1288	110	792	0	FALSE	ACH-000355
NCIH82_LUNG	RBM10--SLC38A5	4	0	RBM10	2759	chrX:47006897:+	SLC38A5	20728	chrX:48326312:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.054	0	RBM10->ArcherDX_panel,FoundationOne_panel,RNA_binding_motif_protein_10,chrX:47004268-47046212:+,SLC38A5->chrX:48316920-48328644:-,solute_carrier_family_38_member_5	NCIH82_LUNG	1	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RCC1--GNAS	4	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.054	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH82_LUNG	1	1	0.054	TRUE	0	3	0	13	2	TRUE	ACH-000355
NCIH82_LUNG	TPD52L1--PARVA	1	12	TPD52L1	2662	chr6:125475116:+	PARVA	32527	chr11:12525861:+	ONLY_REF_SPLICE	NO	325	57	0.04	0.19	0.0135	0.1619	{Klijn_CCL:Lung=1},TPD52L1->chr6:125440195-125585553:+,tumor_protein_D52-like_1,PARVA->chr11:12398732-12552348:+,parvin_alpha	NCIH82_LUNG	0.04	0.19	0.1754	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	HSP90AB1--MT-RNR2	3	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4763	0	0	1	0.0405	0.027	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH82_LUNG	0	1	0.0675	FALSE	13	9	0	364	0	FALSE	ACH-000355
NCIH82_LUNG	NPM1P24--SET	3	2	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	46	1203	0.1	0	0.0405	0.027	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH82_LUNG	0	0.1	0.0675	FALSE	0	0	0	434	0	FALSE	ACH-000355
NCIH82_LUNG	NDUFV2--RP11-190I17.2	3	1	NDUFV2	1168	chr18:9102795:+	RP11-190I17.2	14939	chr18:5163680:+	ONLY_REF_SPLICE	YES	61	0	0.06	1	0.0405	0.0135	NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+,RP11-190I17.2->chr18:5159331-5171025:+	NCIH82_LUNG	0.06	1	0.054	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RP11-266E6.3--LINC00457	3	0	RP11-266E6.3	1183	chr13:35245137:-	LINC00457	7915	chr13:35009781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0405	0	NEIGHBORS_OVERLAP:-:-:[94756],RP11-266E6.3->chr13:35120066-35245319:-,LINC00457->chr13:35009587-35214822:-,long_intergenic_non-protein_coding_RNA_457	NCIH82_LUNG	1	1	0.0405	FALSE	0	0	0	2	0	FALSE	ACH-000355
NCIH82_LUNG	MYH10--SUPT6H	2	3	MYH10	7696	chr17:8473038:-	SUPT6H	51197	chr17:27000389:+	ONLY_REF_SPLICE	YES	101	170	0.05	0.03	0.027	0.0405	MYH10->chr17:8377523-8534079:-,myosin,_heavy_chain_10,_non-muscle,SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+	NCIH82_LUNG	0.03	0.05	0.0675	TRUE	0	0	0	1	0	FALSE	ACH-000355
NCIH82_LUNG	CCDC175--PELI2	2	2	CCDC175	8196	chr14:60027837:-	PELI2	28623	chr14:56645053:+	ONLY_REF_SPLICE	YES	0	161	1	0.02	0.027	0.027	CCDC175->chr14:59971257-60043549:-,coiled-coil_domain_containing_175,PELI2->chr14:56584532-56768244:+,pellino_E3_ubiquitin_protein_ligase_family_member_2	NCIH82_LUNG	0.02	1	0.054	TRUE	0	0	0	1	0	FALSE	ACH-000355
NCIH82_LUNG	CUL1--EZH2	2	1	CUL1	2116	chr7:148396121:+	EZH2	26148	chr7:148544397:-	ONLY_REF_SPLICE	YES	217	5	0.01	0.38	0.027	0.0135	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:+:-:[6347],CUL1->Oncogene{Bushman},chr7:148395006-148498128:+,cullin_1,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	NCIH82_LUNG	0.01	0.38	0.0405	FALSE	0	0	0	2	0	FALSE	ACH-000355
NCIH82_LUNG	TSEN34--ZFP14	2	1	TSEN34	1513	chr19:54694301:+	ZFP14	11052	chr19:36851438:-	ONLY_REF_SPLICE	YES	15	9	0.17	0.25	0.027	0.0135	TSEN34->chr19:54693789-54697585:+,tRNA_splicing_endonuclease_subunit_34,ZFP14->ZFP14_zinc_finger_protein,chr19:36827162-36870101:-	NCIH82_LUNG	0.17	0.25	0.0405	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	AC074363.1--B3GALT1	1	4	AC074363.1	2265	chr2:168346787:+	B3GALT1	6463	chr2:168675182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0135	0.054	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	NCIH82_LUNG	1	1	0.0675	TRUE	0	4	2	6	4	TRUE	ACH-000355
NCIH82_LUNG	ADSS--SDCCAG8	2	0	ADSS	1500	chr1:244614937:-	SDCCAG8	20774	chr1:243433394:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	ADSS->adenylosuccinate_synthase,chr1:244571796-244615436:-,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	ATG13--AMBRA1	2	0	ATG13	1615	chr11:46639440:+	AMBRA1	55718	chr11:46419493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	LOCAL_INVERSION:+:-:[23151],ATG13->autophagy_related_13,chr11:46638826-46696368:+,AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	C17orf76-AS1--NCL	2	0	C17orf76-AS1	1593	chr17:16342728:+	NCL	23593	chr2:232320847:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	C17orf76-AS1->chr17:16342136-16381992:+,NCL->chr2:232318242-232348352:-,nucleolin	NCIH82_LUNG	1	1	0.027	TRUE	0	1	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	DMGDH--NAA35	2	0	DMGDH	1228	chr5:78531634:-	NAA35	31112	chr9:88557070:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	DMGDH->chr5:78293438-78531861:-,dimethylglycine_dehydrogenase,NAA35->N(alpha)-acetyltransferase_35,_NatC_auxiliary_subunit,chr9:88556061-88637213:+	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	EIF4A2--PRICKLE2	2	0	EIF4A2	5380	chr3:186505373:+	PRICKLE2	19958	chr3:64139044:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,PRICKLE2->chr3:64079543-64431152:-,prickle_planar_cell_polarity_protein_2	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	EMC2--EIF3E	2	0	EMC2	1098	chr8:109455927:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	12	0	TRUE	ACH-000355
NCIH82_LUNG	EMC2--EIF3E	2	0	EMC2	14565	chr8:109491339:+	EIF3E	34135	chr8:109241424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[8268],EMC2->ER_membrane_protein_complex_subunit_2,chr8:109455830-109499145:+,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	2	0	TRUE	ACH-000355
NCIH82_LUNG	INTS2--MED13	2	0	INTS2	4907	chr17:59999086:-	MED13	40978	chr17:60088594:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	LOCAL_REARRANGEMENT:-:[14589],INTS2->chr17:59942731-60005377:-,integrator_complex_subunit_2,MED13->chr17:60019966-60142643:-,mediator_complex_subunit_13	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	MGST1--SRP9	2	0	MGST1	5873	chr12:16507204:+	SRP9	24605	chr1:225965637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	PREP--TNFRSF19	2	0	PREP	8016	chr6:105800847:-	TNFRSF19	35624	chr13:24247511:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	PREP->chr6:105725440-105850959:-,prolyl_endopeptidase,TNFRSF19->chr13:24144509-24250232:+,tumor_necrosis_factor_receptor_superfamily_member_19	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	RCC1--EEF1D	2	0	RCC1	2920	chr1:28835417:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	NCIH82_LUNG	1	1	0.027	TRUE	1	10	0	18	0	TRUE	ACH-000355
NCIH82_LUNG	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	NCIH82_LUNG	1	1	0.027	TRUE	1	10	0	18	0	TRUE	ACH-000355
NCIH82_LUNG	RP11-120D5.1--MID1	1	4	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	19	0.71	0.21	0.0135	0.054	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH82_LUNG	0.21	0.71	0.0675	FALSE	2	31	0	60	0	FALSE	ACH-000355
NCIH82_LUNG	RP4-622L5.7--ABCA4	2	0	RP4-622L5.7	1700	chr1:32671716:-	ABCA4	54981	chr1:94466661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	RP4-622L5.7->chr1:32670370-32672415:-,ABCA4->ATP_binding_cassette_subfamily_A_member_4,chr1:94458393-94586688:-	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	TSEN34--ZFP14	2	0	TSEN34	1434	chr19:54694222:+	ZFP14	11052	chr19:36851438:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.027	0	TSEN34->chr19:54693789-54697585:+,tRNA_splicing_endonuclease_subunit_34,ZFP14->ZFP14_zinc_finger_protein,chr19:36827162-36870101:-	NCIH82_LUNG	1	1	0.027	TRUE	0	0	0	1	0	TRUE	ACH-000355
NCIH82_LUNG	AP001432.14--TTC3	1	1	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	NO	5	344	0.29	0.01	0.0135	0.0135	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NCIH82_LUNG	0.01	0.29	0.027	FALSE	0	0	0	15	0	FALSE	ACH-000355
NCIH82_LUNG	ARHGEF7--PCCA	1	1	ARHGEF7	12932	chr13:111870227:+	PCCA	72583	chr13:101179929:+	ONLY_REF_SPLICE	YES	69	54	0.03	0.04	0.0135	0.0135	GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Thyroid=1,Esophagus_-_Mucosa=1},ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	NCIH82_LUNG	0.03	0.04	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000355
NCIH82_LUNG	CPSF6--RNF149	1	1	CPSF6	11046	chr12:69656342:+	RNF149	31662	chr2:101888206:-	ONLY_REF_SPLICE	YES	273	15	0.01	0.12	0.0135	0.0135	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	NCIH82_LUNG	0.01	0.12	0.027	FALSE	0	1	0	1	0	FALSE	ACH-000355
NCIH82_LUNG	CTD-2341M24.1--SDC2	1	1	CTD-2341M24.1	5631	chr14:86537311:+	SDC2	21522	chr8:97605708:+	ONLY_REF_SPLICE	YES	1	289	0.67	0.01	0.0135	0.0135	CTD-2341M24.1->chr14:86401054-86596117:+,SDC2->chr8:97505579-97624000:+,syndecan_2	NCIH82_LUNG	0.01	0.67	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000355
NCIH82_LUNG	DPY19L1--PAPD4	1	1	DPY19L1	11015	chr7:35013126:-	PAPD4	47727	chr5:78975402:+	ONLY_REF_SPLICE	NO	115	32	0.02	0.06	0.0135	0.0135	DPY19L1->chr7:34968488-35077883:-,dpy-19_like_1_(C._elegans),PAPD4->PAP_associated_domain_containing_4,chr5:78907943-78982471:+	NCIH82_LUNG	0.02	0.06	0.027	TRUE	0	0	0	1	0	FALSE	ACH-000355
NCIH82_LUNG	DYM--ACAA2	1	1	DYM	18340	chr18:46858234:-	ACAA2	42484	chr18:47329223:-	ONLY_REF_SPLICE	YES	58	165	0.03	0.01	0.0135	0.0135	DYM->Oncogene{Bushman},chr18:46570039-46987717:-,dymeclin,ACAA2->acetyl-CoA_acyltransferase_2,chr18:47309869-47340330:-	NCIH82_LUNG	0.01	0.03	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000355
NCIH82_LUNG	JARID2--DTNBP1	1	1	JARID2	5780	chr6:15410596:+	DTNBP1	32321	chr6:15638035:-	ONLY_REF_SPLICE	NO	145	88	0.01	0.02	0.0135	0.0135	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=7;pct=0.08%;dist=Lung=1,Brain_-_Hippocampus=1,Artery_-_Coronary=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:+:-:[780],JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,DTNBP1->chr6:15523032-15663289:-,dystrobrevin_binding_protein_1	NCIH82_LUNG	0.01	0.02	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000355
NCIH82_LUNG	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0135	0.0135	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH82_LUNG	0.67	1	0.027	FALSE	292	1546	117	613	0	FALSE	ACH-000355
NCIH82_LUNG	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0135	0.0135	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH82_LUNG	1	1	0.027	FALSE	416	2512	207	587	0	FALSE	ACH-000355
NCIH82_LUNG	SCAMP1--AP3B1	1	1	SCAMP1	3806	chr5:77684738:+	AP3B1	28426	chr5:77477486:-	ONLY_REF_SPLICE	NO	469	96	0	0.02	0.0135	0.0135	GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[65760],SCAMP1->chr5:77656339-77776562:+,secretory_carrier_membrane_protein_1,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	NCIH82_LUNG	0	0.02	0.027	FALSE	0	1	0	1	0	FALSE	ACH-000355
NCIH82_LUNG	SNHG5--DKC1	1	1	SNHG5	1780	chr6:86387672:-	DKC1	20282	chrX:154005074:+	ONLY_REF_SPLICE	NO	385	632	0.01	0	0.0135	0.0135	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,DKC1->Oncogene{Bushman},chrX:153991031-154005964:+,dyskerin_pseudouridine_synthase_1	NCIH82_LUNG	0	0.01	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000355
NCIH82_LUNG	SNRPN--SF1	1	1	SNRPN	9029	chr15:25207356:+	SF1	22249	chr11:64544098:-	ONLY_REF_SPLICE	YES	373	445	0.01	0	0.0135	0.0135	SNRPN->chr15:25068794-25223870:+,small_nuclear_ribonucleoprotein_polypeptide_N,SF1->chr11:64532078-64546258:-,splicing_factor_1	NCIH82_LUNG	0	0.01	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000355
NCIH82_LUNG	U2AF2--MICAL1	1	1	U2AF2	2008	chr19:56166519:+	MICAL1	20767	chr6:109772903:-	ONLY_REF_SPLICE	NO	424	22	0	0.08	0.0135	0.0135	U2AF2->U2_small_nuclear_RNA_auxiliary_factor_2,chr19:56165512-56186081:+,MICAL1->chr6:109765265-109787171:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_1	NCIH82_LUNG	0	0.08	0.027	FALSE	0	0	0	1	0	FALSE	ACH-000355
NCIH82_LUNG	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	3363	178	0	0.01	0.0135	0.0135	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NCIH82_LUNG	0	0.01	0.027	FALSE	6	50	7	115	0	FALSE	ACH-000355
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	2923	268	MT-ND4	1180	chrM:10939:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	40	0	0.99	1	23.4514	2.1502	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.99	1	25.6016	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	502	24	MT-ND5	2641	chrM:13977:+	MT-ND4	6579	chrM:11526:+	INCL_NON_REF_SPLICE	YES	4019	13372	0.12	0.04	4.0276	0.1926	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0.04	0.12	4.2202	FALSE	47	27	1	24	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	VCL--ADK	245	79	VCL	15969	chr10:75860855:+	ADK	36629	chr10:76153899:+	ONLY_REF_SPLICE	YES	75	95	0.81	0.77	1.9656	0.6338	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[31042],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ADK->adenosine_kinase,chr10:75910960-76469061:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.77	0.81	2.5994	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	ATF7IP--RP11-695J4.2	195	130	ATF7IP	1152	chr12:14518761:+	RP11-695J4.2	35045	chr12:14765813:+	ONLY_REF_SPLICE	YES	78	0	0.81	1	1.5645	1.043	NEIGHBORS[68987],ATF7IP->Oncogene{Bushman},activating_transcription_factor_7_interacting_protein,chr12:14518610-14651697:+,RP11-695J4.2->chr12:14720684-14772689:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.81	1	2.6075	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	151	15	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2115	0.1203	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	1.3318	FALSE	462	80	0	856	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	148	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	1.1874	0.0321	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	0.99	1	1.2195	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	KDM4B--UHRF1	93	40	KDM4B	2200	chr19:5016350:+	UHRF1	38758	chr19:4910888:+	ONLY_REF_SPLICE	YES	24	64	0.85	0.68	0.7461	0.3209	YOSHIHARA_TCGA_num_samples[BRCA:2],LOCAL_REARRANGEMENT:+:[6960],KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1	BICR16_UPPER_AERODIGESTIVE_TRACT	0.68	0.85	1.067	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	51	205	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	9353	5	0.03	0.98	0.4092	1.6447	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.03	0.98	2.0539	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	36	264	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	42	4	0.88	0.99	0.2888	2.1181	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.88	0.99	2.4069	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	PRRC2B--PKP2	89	25	PRRC2B	5695	chr9:134314448:+	PKP2	51382	chr12:32977096:-	ONLY_REF_SPLICE	YES	96	26	0.54	0.81	0.7141	0.2006	PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,PKP2->chr12:32943679-33049774:-,plakophilin_2	BICR16_UPPER_AERODIGESTIVE_TRACT	0.54	0.81	0.9147	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	KRT5--MT-CO3	88	2	KRT5	4002	chr12:52911470:-	MT-CO3	10585	chrM:9678:+	INCL_NON_REF_SPLICE	NO	10085	22761	0.01	0	0.706	0.016	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.722	FALSE	0	0	0	4	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	20	269	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	45	0	0.87	1	0.1605	2.1582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.87	1	2.3187	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	307	MT-ND4	1968	chrM:11727:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	21797	0	0.01	1	0.0802	2.4631	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.01	1	2.5433	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	20	265	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	28	2	0.91	0.99	0.1605	2.1261	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.91	0.99	2.2866	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	ZFAND3--CMTR1	78	25	ZFAND3	1518	chr6:37787792:+	CMTR1	30527	chr6:37438797:+	ONLY_REF_SPLICE	YES	28	46	0.79	0.69	0.6258	0.2006	ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3,CMTR1->cap_methyltransferase_1,chr6:37400995-37450603:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.69	0.79	0.8264	TRUE	0	1	0	1	1	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	13	282	MT-ND4	1285	chrM:11044:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	117	0	0.72	1	0.1043	2.2625	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.72	1	2.3668	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	37	177	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	18	5	0.92	0.98	0.2969	1.4201	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.92	0.98	1.717	FALSE	344	821	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	13	270	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	42	0	0.87	1	0.1043	2.1662	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.87	1	2.2705	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	68	42	MT-ND4	1783	chrM:11542:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	9353	2	0.01	0.98	0.5456	0.337	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.01	0.98	0.8826	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	294	MT-ND4	1544	chrM:11303:+	MT-ND4L	5522	chrM:10613:+	INCL_NON_REF_SPLICE	YES	1164	4	0.2	0.99	0.0401	2.3588	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.2	0.99	2.3989	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	265	MT-ND4	1170	chrM:10929:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	YES	36	4	0.88	0.99	0.0963	2.1261	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.88	0.99	2.2224	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	77	5	MT-ND5	2509	chrM:13845:+	MT-ND4	7031	chrM:11978:+	INCL_NON_REF_SPLICE	YES	7636	75	0.01	0.52	0.6178	0.0401	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0.01	0.52	0.6579	FALSE	45	28	1	23	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	272	MT-ND4	1209	chrM:10968:+	MT-ND4L	5470	chrM:10561:+	INCL_NON_REF_SPLICE	YES	64	0	0.82	1	0.0802	2.1823	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.82	1	2.2625	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	299	MT-ND4	2004	chrM:11763:+	MT-ND4L	5529	chrM:10620:+	INCL_NON_REF_SPLICE	YES	21453	4	0.01	0.99	0.0241	2.3989	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.01	0.99	2.423	FALSE	344	826	44	305	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	282	MT-ND4	1299	chrM:11058:+	MT-ND4L	5462	chrM:10553:+	INCL_NON_REF_SPLICE	YES	121	0	0.7	1	0.0562	2.2625	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.7	1	2.3187	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	252	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	26	4	0.91	0.99	0.1123	2.0218	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.91	0.99	2.1341	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	251	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	25	2	0.91	0.99	0.1123	2.0138	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.91	0.99	2.1261	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	293	MT-ND4	1531	chrM:11290:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	1075	4	0.22	0.99	0.0241	2.3508	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.22	0.99	2.3749	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	271	MT-ND4	1152	chrM:10911:+	MT-ND4L	5417	chrM:10508:+	INCL_NON_REF_SPLICE	NO	28	0	0.91	1	0.0642	2.1742	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.91	1	2.2384	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	273	MT-ND4	1205	chrM:10964:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	62	0	0.82	1	0.0481	2.1903	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.82	1	2.2384	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	29	179	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	25	5	0.89	0.98	0.2327	1.4361	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.89	0.98	1.6688	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	247	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	25	4	0.91	0.98	0.0963	1.9817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.91	0.98	2.078	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	274	MT-ND4	1197	chrM:10956:+	MT-ND4L	5432	chrM:10523:+	INCL_NON_REF_SPLICE	YES	45	0	0.86	1	0.0401	2.1983	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.86	1	2.2384	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	269	MT-ND4	1209	chrM:10968:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	NO	64	4	0.81	0.99	0.0481	2.1582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.81	0.99	2.2063	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	252	MT-ND4	1114	chrM:10873:+	MT-ND4L	5509	chrM:10600:+	INCL_NON_REF_SPLICE	YES	25	2	0.91	0.99	0.0802	2.0218	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.91	0.99	2.102	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	276	MT-ND4	1285	chrM:11044:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	117	4	0.71	0.99	0.0321	2.2144	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.71	0.99	2.2465	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	271	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	73	4	0.79	0.99	0.0401	2.1742	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.79	0.99	2.2143	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	259	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	28	2	0.91	0.99	0.0642	2.078	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.91	0.99	2.1422	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	275	MT-ND4	1263	chrM:11022:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	111	0	0.71	1	0.0241	2.2063	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.71	1	2.2304	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	265	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	39	4	0.87	0.99	0.0401	2.1261	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.87	0.99	2.1662	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	271	MT-ND4	1284	chrM:11043:+	MT-ND4L	5537	chrM:10628:+	INCL_NON_REF_SPLICE	YES	118	5	0.7	0.98	0.0241	2.1742	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.7	0.98	2.1983	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	269	MT-ND4	1216	chrM:10975:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	YES	71	4	0.79	0.99	0.0241	2.1582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.79	0.99	2.1823	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	269	MT-ND4	1195	chrM:10954:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	44	0	0.86	1	0.0241	2.1582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.86	1	2.1823	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	264	MT-ND4	1159	chrM:10918:+	MT-ND4L	5503	chrM:10594:+	INCL_NON_REF_SPLICE	YES	32	2	0.89	0.99	0.0321	2.1181	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.89	0.99	2.1502	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	264	MT-ND4	1155	chrM:10914:+	MT-ND4L	5512	chrM:10603:+	INCL_NON_REF_SPLICE	YES	30	3	0.9	0.99	0.0321	2.1181	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.9	0.99	2.1502	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	268	MT-ND4	1168	chrM:10927:+	MT-ND4L	5460	chrM:10551:+	INCL_NON_REF_SPLICE	YES	36	0	0.88	1	0.0241	2.1502	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.88	1	2.1743	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	259	MT-ND4	1147	chrM:10906:+	MT-ND4L	5504	chrM:10595:+	INCL_NON_REF_SPLICE	YES	27	2	0.91	0.99	0.0401	2.078	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.91	0.99	2.1181	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	62	31	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	8	0	0.92	1	0.4974	0.2487	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	0.92	1	0.7461	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	266	MT-ND4	1208	chrM:10967:+	MT-ND4L	5537	chrM:10628:+	INCL_NON_REF_SPLICE	YES	63	5	0.81	0.98	0.0241	2.1341	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.81	0.98	2.1582	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	265	MT-ND4	1184	chrM:10943:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	40	4	0.87	0.99	0.0241	2.1261	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.87	0.99	2.1502	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	264	MT-ND4	1195	chrM:10954:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	44	4	0.86	0.99	0.0241	2.1181	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.86	0.99	2.1422	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	253	MT-ND4	1114	chrM:10873:+	MT-ND4L	5466	chrM:10557:+	INCL_NON_REF_SPLICE	YES	25	0	0.91	1	0.0241	2.0298	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.91	1	2.0539	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	253	MT-ND4	1112	chrM:10871:+	MT-ND4L	5464	chrM:10555:+	INCL_NON_REF_SPLICE	YES	25	0	0.91	1	0.0241	2.0298	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.91	1	2.0539	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	249	MT-ND4	1108	chrM:10867:+	MT-ND4L	5519	chrM:10610:+	INCL_NON_REF_SPLICE	YES	25	4	0.91	0.98	0.0321	1.9977	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.91	0.98	2.0298	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	253	MT-ND4	1122	chrM:10881:+	MT-ND4L	5515	chrM:10606:+	INCL_NON_REF_SPLICE	YES	22	4	0.92	0.98	0.0241	2.0298	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.92	0.98	2.0539	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	251	MT-ND4	1105	chrM:10864:+	MT-ND4L	5459	chrM:10550:+	INCL_NON_REF_SPLICE	YES	25	0	0.91	1	0.0241	2.0138	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.91	1	2.0379	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	236	MT-ND4	1984	chrM:11743:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	21741	5	0.01	0.98	0.0321	1.8934	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.01	0.98	1.9255	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	202	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	20	4	0.91	0.98	0.0963	1.6207	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.91	0.98	1.717	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	58	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.4653	0.0481	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	0.98	1	0.5134	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	180	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	64	5	0.75	0.97	0.1123	1.4441	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.75	0.97	1.5564	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	28	122	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2246	0.9788	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	1.2034	FALSE	369	2501	205	193	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	49	37	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	42	2	0.67	0.98	0.3931	0.2969	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.67	0.98	0.69	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	217	MT-ND4	1092	chrM:10851:+	MT-ND4L	5537	chrM:10628:+	INCL_NON_REF_SPLICE	YES	21	5	0.91	0.98	0.0321	1.741	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.91	0.98	1.7731	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	170	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	130	5	0.59	0.97	0.1123	1.3639	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.59	0.97	1.4762	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	ATF7IP--RP11-695J4.2	39	66	ATF7IP	1152	chr12:14518761:+	RP11-695J4.2	37142	chr12:14772086:+	ONLY_REF_SPLICE	YES	78	16	0.57	0.87	0.3129	0.5295	NEIGHBORS[68987],ATF7IP->Oncogene{Bushman},activating_transcription_factor_7_interacting_protein,chr12:14518610-14651697:+,RP11-695J4.2->chr12:14720684-14772689:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.57	0.87	0.8424	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	54	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4332	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.4332	FALSE	369	2501	205	193	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	200	MT-ND4	1081	chrM:10840:+	MT-ND4L	5526	chrM:10617:+	INCL_NON_REF_SPLICE	NO	20	4	0.91	0.98	0.0241	1.6046	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.91	0.98	1.6287	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	185	MT-ND4	1289	chrM:11048:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	118	5	0.62	0.97	0.0481	1.4843	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.62	0.97	1.5324	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	174	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	25	5	0.88	0.97	0.0642	1.396	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.88	0.97	1.4602	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	170	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	120	5	0.6	0.97	0.0722	1.3639	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.6	0.97	1.4361	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	185	MT-ND4	1285	chrM:11044:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	117	5	0.62	0.97	0.0401	1.4843	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.62	0.97	1.5244	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	31	78	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	18388	3	0.01	0.97	0.2487	0.6258	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.01	0.97	0.8745	FALSE	328	800	43	304	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	189	MT-ND4	1215	chrM:10974:+	MT-ND4L	5606	chrM:10697:+	INCL_NON_REF_SPLICE	YES	74	5	0.72	0.97	0.0241	1.5164	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.72	0.97	1.5405	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	46	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3691	0.1284	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.4975	TRUE	508	994	45	981	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	179	MT-ND4	1164	chrM:10923:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	34	5	0.84	0.97	0.0321	1.4361	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.84	0.97	1.4682	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	179	MT-ND4	1298	chrM:11057:+	MT-ND4L	5614	chrM:10705:+	INCL_NON_REF_SPLICE	YES	120	5	0.6	0.97	0.0241	1.4361	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.6	0.97	1.4602	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	36	44	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	71	3	0.53	0.96	0.2888	0.353	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.53	0.96	0.6418	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	126	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	34	5	0.81	0.97	0.1203	1.0109	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.81	0.97	1.1312	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	174	MT-ND4	1295	chrM:11054:+	MT-ND4L	5617	chrM:10708:+	INCL_NON_REF_SPLICE	YES	121	5	0.59	0.97	0.0241	1.396	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.59	0.97	1.4201	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	ATF7IP--RP11-695J4.2	12	136	ATF7IP	4794	chr12:14538334:+	RP11-695J4.2	35045	chr12:14765813:+	ONLY_REF_SPLICE	YES	84	0	0.64	1	0.0963	1.0911	NEIGHBORS[68987],ATF7IP->Oncogene{Bushman},activating_transcription_factor_7_interacting_protein,chr12:14518610-14651697:+,RP11-695J4.2->chr12:14720684-14772689:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.64	1	1.1874	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	171	MT-ND4	1093	chrM:10852:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	21	5	0.89	0.97	0.0241	1.3719	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.89	0.97	1.396	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	169	MT-ND4	1226	chrM:10985:+	MT-ND4L	5617	chrM:10708:+	INCL_NON_REF_SPLICE	YES	78	5	0.69	0.97	0.0241	1.3559	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.69	0.97	1.38	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	44	1	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.353	0.008	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.361	FALSE	51	280	19	36	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	44	0	MT-ND4	1003	chrM:10762:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.353	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.353	FALSE	344	821	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	156	MT-ND4	1062	chrM:10821:+	MT-ND4L	5516	chrM:10607:+	INCL_NON_REF_SPLICE	YES	12	4	0.93	0.98	0.0321	1.2516	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.93	0.98	1.2837	FALSE	344	821	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	43	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.345	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.345	FALSE	462	80	0	856	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	151	MT-ND4	1503	chrM:11262:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	716	5	0.18	0.97	0.0401	1.2115	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.18	0.97	1.2516	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	146	MT-ND4	1170	chrM:10929:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	36	5	0.81	0.97	0.0481	1.1714	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.81	0.97	1.2195	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	144	MT-ND4	1220	chrM:10979:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	73	5	0.67	0.97	0.0481	1.1553	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.67	0.97	1.2034	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	11	123	MT-ND4	1144	chrM:10903:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	26	5	0.84	0.96	0.0883	0.9868	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.84	0.96	1.0751	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	152	MT-ND4	1169	chrM:10928:+	MT-ND4L	5620	chrM:10711:+	INCL_NON_REF_SPLICE	YES	36	5	0.81	0.97	0.0241	1.2195	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.81	0.97	1.2436	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	37	15	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2969	0.1203	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.4172	FALSE	462	80	0	856	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	31	38	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2487	0.3049	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.5536	FALSE	369	2501	205	193	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	39	5	MT-ND5	2455	chrM:13791:+	MT-ND4	7040	chrM:11987:+	INCL_NON_REF_SPLICE	YES	7429	66	0.01	0.4	0.3129	0.0401	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0.01	0.4	0.353	FALSE	45	28	1	23	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	122	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	57	5	0.7	0.96	0.0722	0.9788	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.7	0.96	1.051	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	118	MT-ND4	1231	chrM:10990:+	MT-ND4L	5632	chrM:10723:+	INCL_NON_REF_SPLICE	YES	86	5	0.6	0.96	0.0722	0.9467	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.6	0.96	1.0189	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	32	24	MT-ND5	2530	chrM:13866:+	MT-ND4	6581	chrM:11528:+	INCL_NON_REF_SPLICE	YES	7457	13260	0.01	0	0.2567	0.1926	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.4493	FALSE	47	28	1	24	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	119	MT-ND4	1144	chrM:10903:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	26	5	0.83	0.96	0.0642	0.9547	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.83	0.96	1.0189	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	RSRC1--MFSD1	34	14	RSRC1	15892	chr3:158178792:+	MFSD1	30521	chr3:158522108:+	ONLY_REF_SPLICE	YES	39	108	0.55	0.31	0.2728	0.1123	RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,MFSD1->chr3:158449987-158547508:+,major_facilitator_superfamily_domain_containing_1	BICR16_UPPER_AERODIGESTIVE_TRACT	0.31	0.55	0.3851	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	19	73	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	918	3	0.09	0.97	0.1524	0.5857	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.09	0.97	0.7381	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	ATF7IP--RP11-695J4.2	7	119	ATF7IP	1152	chr12:14518761:+	RP11-695J4.2	35049	chr12:14765817:+	INCL_NON_REF_SPLICE	YES	78	0	0.62	1	0.0562	0.9547	NEIGHBORS[68987],ATF7IP->Oncogene{Bushman},activating_transcription_factor_7_interacting_protein,chr12:14518610-14651697:+,RP11-695J4.2->chr12:14720684-14772689:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.62	1	1.0109	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	ATF7IP--RP11-695J4.2	1	136	ATF7IP	6184	chr12:14548186:+	RP11-695J4.2	35045	chr12:14765813:+	ONLY_REF_SPLICE	YES	88	0	0.61	1	0.008	1.0911	NEIGHBORS[68987],ATF7IP->Oncogene{Bushman},activating_transcription_factor_7_interacting_protein,chr12:14518610-14651697:+,RP11-695J4.2->chr12:14720684-14772689:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.61	1	1.0991	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	ATF7IP--RP11-695J4.2	1	131	ATF7IP	2278	chr12:14520383:+	RP11-695J4.2	35045	chr12:14765813:+	ONLY_REF_SPLICE	YES	82	0	0.62	1	0.008	1.051	NEIGHBORS[68987],ATF7IP->Oncogene{Bushman},activating_transcription_factor_7_interacting_protein,chr12:14518610-14651697:+,RP11-695J4.2->chr12:14720684-14772689:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.62	1	1.059	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	KRT5--MT-CO3	28	19	KRT5	6920	chr12:52908552:-	MT-CO3	10163	chrM:9256:+	INCL_NON_REF_SPLICE	NO	3948	0	0.01	1	0.2246	0.1524	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BICR16_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.377	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	21	44	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	64	3	0.5	0.96	0.1685	0.353	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.5	0.96	0.5215	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	PAIP2--CTB-35F21.1	32	0	PAIP2	1394	chr5:138677669:+	CTB-35F21.1	11926	chr5:139101488:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2567	0	PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2,CTB-35F21.1->chr5:139064230-139124595:+	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.2567	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	97	MT-ND4	1519	chrM:11278:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	YES	918	5	0.1	0.95	0.0562	0.7782	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.1	0.95	0.8344	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	19	44	MT-ND5	2794	chrM:14130:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	0	14371	1	0	0.1524	0.353	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	1	0.5054	FALSE	47	27	1	24	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	61	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	40	3	0.65	0.96	0.1123	0.4894	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.65	0.96	0.6017	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	23	21	MT-ND5	2470	chrM:13806:+	MT-ND4	6656	chrM:11603:+	INCL_NON_REF_SPLICE	YES	7859	7144	0.01	0.01	0.1845	0.1685	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0.01	0.01	0.353	FALSE	47	28	1	24	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	27	4	MT-ND5	2730	chrM:14066:+	MT-ND4	7048	chrM:11995:+	INCL_NON_REF_SPLICE	YES	5	53	0.86	0.37	0.2166	0.0321	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0.37	0.86	0.2487	FALSE	45	27	1	23	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	50	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1075	3	0.06	0.96	0.1203	0.4012	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.06	0.96	0.5215	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	3	98	MT-ND5	2800	chrM:14136:+	MT-ND4	5942	chrM:10889:+	INCL_NON_REF_SPLICE	YES	0	4469	1	0.02	0.0241	0.7863	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0.02	1	0.8104	FALSE	29	25	1	23	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	97	MT-ND4	1112	chrM:10871:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	25	5	0.8	0.95	0.0241	0.7782	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.8	0.95	0.8023	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	71	MT-ND4	1471	chrM:11230:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	486	3	0.14	0.96	0.0722	0.5696	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.14	0.96	0.6418	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	16	42	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	8	0	0.88	1	0.1284	0.337	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.4654	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	6	79	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0.6338	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.6819	FALSE	369	2501	205	193	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	6	78	MT-TC	1061	chrM:5766:-	MT-TY	4075	chrM:5883:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0.6258	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.6739	FALSE	51	280	19	36	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	61	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	44	3	0.62	0.96	0.0802	0.4894	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.62	0.96	0.5696	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	45	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	42	3	0.58	0.95	0.1123	0.361	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.58	0.95	0.4733	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	13	49	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	549	3	0.1	0.95	0.1043	0.3931	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.1	0.95	0.4974	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	44	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	34	3	0.63	0.95	0.1123	0.353	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.63	0.95	0.4653	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TL1--MT-RNR2	25	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2006	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.2006	FALSE	7	521	16	32	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	20	19	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	44	2	0.47	0.95	0.1605	0.1524	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.47	0.95	0.3129	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	20	19	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	118	2	0.25	0.95	0.1605	0.1524	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.25	0.95	0.3129	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	21	15	MT-ND5	2680	chrM:14016:+	MT-ND4	6806	chrM:11753:+	INCL_NON_REF_SPLICE	YES	2050	1559	0.02	0.02	0.1685	0.1203	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0.02	0.02	0.2888	FALSE	47	27	1	24	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	10	59	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0802	0.4734	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.5536	FALSE	369	2501	205	193	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	66	MT-ND4	1342	chrM:11101:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	180	3	0.29	0.96	0.0642	0.5295	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.29	0.96	0.5937	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	78	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	21	5	0.8	0.94	0.0401	0.6258	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.8	0.94	0.6659	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	65	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	18	5	0.8	0.94	0.0642	0.5215	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.8	0.94	0.5857	FALSE	344	821	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	76	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	8643	3	0.01	0.96	0.0401	0.6098	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.01	0.96	0.6499	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TL1--MT-RNR2	5	76	MT-TL1	1092	chrM:3321:+	MT-RNR2	5245	chrM:2840:+	INCL_NON_REF_SPLICE	YES	0	160	1	0.34	0.0401	0.6098	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BICR16_UPPER_AERODIGESTIVE_TRACT	0.34	1	0.6499	FALSE	7	521	16	32	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	67	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	6	0	0.93	1	0.0562	0.5375	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.93	1	0.5937	FALSE	344	821	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	3	82	MT-ND5	2764	chrM:14100:+	MT-ND4	6098	chrM:11045:+	INCL_NON_REF_SPLICE	YES	0	18140	1	0	0.0241	0.6579	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	1	0.682	FALSE	47	27	1	23	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	72	MT-ND4	1125	chrM:10884:+	MT-ND4L	5651	chrM:10742:+	INCL_NON_REF_SPLICE	YES	24	4	0.76	0.95	0.0401	0.5777	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.76	0.95	0.6178	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	12	43	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	8	0	0.87	1	0.0963	0.345	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	0.87	1	0.4413	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TL1--MT-RNR2	9	55	MT-TL1	1086	chrM:3315:+	MT-RNR2	5568	chrM:3163:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.96	0.0722	0.4413	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BICR16_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.5135	FALSE	7	521	16	32	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	ATF7IP--RP11-695J4.2	1	86	ATF7IP	1152	chr12:14518761:+	RP11-695J4.2	36093	chr12:14767456:+	ONLY_REF_SPLICE	YES	78	3	0.53	0.97	0.008	0.69	NEIGHBORS[68987],ATF7IP->Oncogene{Bushman},activating_transcription_factor_7_interacting_protein,chr12:14518610-14651697:+,RP11-695J4.2->chr12:14720684-14772689:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.53	0.97	0.698	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	KRT5--MT-CO3	21	6	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	6585	23446	0	0	0.1685	0.0481	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0	0.2166	FALSE	0	0	0	18	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	61	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	34	3	0.67	0.96	0.0562	0.4894	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.67	0.96	0.5456	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	33	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	11	5	0.81	0.9	0.1123	0.2648	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.81	0.9	0.3771	FALSE	344	821	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	75	MT-ND4	1180	chrM:10939:+	MT-ND4L	5650	chrM:10741:+	INCL_NON_REF_SPLICE	NO	40	4	0.66	0.95	0.0241	0.6017	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.66	0.95	0.6258	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	74	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	6	0	0.93	1	0.0241	0.5937	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.93	1	0.6178	FALSE	344	821	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TL1--MT-RNR2	5	65	MT-TL1	1095	chrM:3324:+	MT-RNR2	5554	chrM:3149:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.96	0.0401	0.5215	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BICR16_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.5616	FALSE	7	521	16	32	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	21	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1685	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1685	FALSE	369	2501	205	193	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	20	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1605	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1605	FALSE	369	2501	205	193	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	5	60	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0.4814	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.5215	FALSE	369	2501	205	193	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	20	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1605	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1605	TRUE	519	3926	326	965	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	51	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	5	2	0.92	0.97	0.0562	0.4092	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.92	0.97	0.4654	FALSE	344	821	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	13	27	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1043	0.2166	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.3209	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-CO1--KRT6A	19	2	MT-CO1	1575	chrM:6478:+	KRT6A	5543	chr12:52887041:-	INCL_NON_REF_SPLICE	YES	17328	0	0	1	0.1524	0.016	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	BICR16_UPPER_AERODIGESTIVE_TRACT	0	1	0.1684	FALSE	7	19	2	8	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	46	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	117	3	0.32	0.95	0.0642	0.3691	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.32	0.95	0.4333	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	61	MT-ND4	1209	chrM:10968:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	64	3	0.5	0.96	0.0321	0.4894	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.5	0.96	0.5215	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	4	61	MT-ND5	2667	chrM:14003:+	MT-ND4	6022	chrM:10969:+	INCL_NON_REF_SPLICE	YES	2884	12881	0.02	0.01	0.0321	0.4894	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.5215	FALSE	29	25	1	23	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	19	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1524	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1524	TRUE	0	0	0	434	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	63	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	118	3	0.36	0.96	0.0241	0.5055	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.36	0.96	0.5296	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	4	59	MT-ND5	2730	chrM:14066:+	MT-ND4	6084	chrM:11031:+	INCL_NON_REF_SPLICE	YES	5	17262	0.93	0	0.0321	0.4734	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.93	0.5055	FALSE	47	27	1	23	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	58	MT-ND4	1144	chrM:10903:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	26	3	0.7	0.95	0.0321	0.4653	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.7	0.95	0.4974	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	ATF7IP--RP11-695J4.2	1	68	ATF7IP	4794	chr12:14538334:+	RP11-695J4.2	37142	chr12:14772086:+	ONLY_REF_SPLICE	NO	84	16	0.45	0.81	0.008	0.5456	NEIGHBORS[68987],ATF7IP->Oncogene{Bushman},activating_transcription_factor_7_interacting_protein,chr12:14518610-14651697:+,RP11-695J4.2->chr12:14720684-14772689:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.45	0.81	0.5536	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	CTSZ--ATP5E	17	4	CTSZ	5501	chr20:57571694:-	ATP5E	12707	chr20:57603896:-	ONLY_REF_SPLICE	YES	282	603	0.07	0.03	0.1364	0.0321	LOCAL_REARRANGEMENT:-:[18220],CTSZ->cathepsin_Z,chr20:57570240-57582302:-,ATP5E->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_epsilon_subunit,chr20:57600522-57607437:-	BICR16_UPPER_AERODIGESTIVE_TRACT	0.03	0.07	0.1685	TRUE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MFSD1--DGKG	17	4	MFSD1	10596	chr3:158527076:+	DGKG	50414	chr3:185906168:-	ONLY_REF_SPLICE	YES	76	7	0.22	0.75	0.1364	0.0321	MFSD1->chr3:158449987-158547508:+,major_facilitator_superfamily_domain_containing_1,DGKG->chr3:185823457-186080026:-,diacylglycerol_kinase_gamma	BICR16_UPPER_AERODIGESTIVE_TRACT	0.22	0.75	0.1685	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	52	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8643	3	0.01	0.95	0.0401	0.4172	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.01	0.95	0.4573	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	12	24	MT-ND5	2317	chrM:13653:+	MT-ND4	6294	chrM:11241:+	INCL_NON_REF_SPLICE	YES	8198	22993	0	0	0.0963	0.1926	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0	0.2889	FALSE	47	29	1	24	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	9	34	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0.2728	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.345	FALSE	369	2501	205	193	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	13	17	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	21	2	0.59	0.94	0.1043	0.1364	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.59	0.94	0.2407	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	4	53	MT-ND5	2514	chrM:13850:+	MT-ND4	6040	chrM:10987:+	INCL_NON_REF_SPLICE	NO	7486	13824	0.01	0	0.0321	0.4252	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.4573	FALSE	46	28	1	23	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	4	53	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0321	0.4252	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.4573	FALSE	369	2501	205	193	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	3	56	MT-TC	1102	chrM:5725:-	MT-TY	4082	chrM:5876:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0241	0.4493	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.4734	FALSE	51	280	19	36	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	52	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	20055	3	0	0.95	0.0241	0.4172	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.95	0.4413	FALSE	343	822	44	305	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	16	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1284	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1284	FALSE	369	2501	205	193	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	11	19	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	57	2	0.34	0.94	0.0883	0.1524	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.34	0.94	0.2407	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	10	23	MT-ND5	2662	chrM:13998:+	MT-ND4	6656	chrM:11603:+	INCL_NON_REF_SPLICE	YES	3110	7144	0.01	0	0.0802	0.1845	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.2647	FALSE	47	27	1	24	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-CO1--KRT6A	15	2	MT-CO1	1591	chrM:6494:+	KRT6A	5561	chr12:52887023:-	INCL_NON_REF_SPLICE	YES	19455	0	0	1	0.1203	0.016	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	BICR16_UPPER_AERODIGESTIVE_TRACT	0	1	0.1363	FALSE	7	19	2	8	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	46	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	118	3	0.3	0.94	0.0321	0.3691	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.3	0.94	0.4012	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	42	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	9	0	0.84	1	0.0401	0.337	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	0.84	1	0.3771	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	5	41	MT-ND5	2303	chrM:13639:+	MT-ND4	6057	chrM:11004:+	INCL_NON_REF_SPLICE	YES	7840	14783	0.01	0	0.0401	0.3289	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.369	FALSE	47	29	1	23	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	5	41	MT-ND5	2455	chrM:13791:+	MT-ND4	6098	chrM:11045:+	INCL_NON_REF_SPLICE	YES	7429	18140	0.01	0	0.0401	0.3289	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.369	FALSE	47	28	1	23	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	44	MT-ND4	1170	chrM:10929:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	36	3	0.57	0.94	0.0321	0.353	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.57	0.94	0.3851	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	40	MT-ND4	1170	chrM:10929:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	36	2	0.56	0.96	0.0401	0.3209	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.56	0.96	0.361	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	40	MT-ND4	1114	chrM:10873:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	25	3	0.64	0.94	0.0401	0.3209	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.64	0.94	0.361	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	ZNF654--HMGB2	15	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1203	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1203	TRUE	0	0	0	518	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	14	3	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1123	0.0241	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1364	FALSE	13	214	14	42	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	3	47	MT-TC	1047	chrM:5780:-	MT-TY	4069	chrM:5889:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0241	0.3771	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.4012	FALSE	51	280	19	36	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	CTD-2008L17.1--RP11-456O19.2	12	8	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.0963	0.0642	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.1605	FALSE	20	187	4	79	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	3	44	MT-ND5	2228	chrM:13564:+	MT-ND4	5977	chrM:10924:+	INCL_NON_REF_SPLICE	YES	9338	8355	0.01	0.01	0.0241	0.353	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0.01	0.01	0.3771	FALSE	31	27	1	23	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	40	MT-ND6	1153	chrM:14521:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.0321	0.3209	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	0.92	1	0.353	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	3	43	MT-ND5	2251	chrM:13587:+	MT-ND4	6022	chrM:10969:+	INCL_NON_REF_SPLICE	YES	9005	12881	0.01	0	0.0241	0.345	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.3691	FALSE	30	27	1	23	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	10	15	MT-ND5	2290	chrM:13626:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	8128	14371	0	0	0.0802	0.1203	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0	0.2005	FALSE	47	29	1	24	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	35	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	7	0	0.85	1	0.0401	0.2808	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	0.85	1	0.3209	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	6	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.82	0.0963	0.0481	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.82	1	0.1444	FALSE	344	821	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	9	18	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0.1444	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.2166	FALSE	462	80	0	856	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	13	2	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1043	0.016	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1203	FALSE	13	214	14	42	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	12	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.95	0.95	0.0963	0.0481	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.95	0.95	0.1444	FALSE	515	4851	409	746	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	5	33	MT-ND5	2247	chrM:13583:+	MT-ND4	6120	chrM:11067:+	INCL_NON_REF_SPLICE	NO	9099	20071	0	0	0.0401	0.2648	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0	0.3049	FALSE	47	29	1	24	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	33	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.0401	0.2648	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.3049	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	40	MT-ND4	1112	chrM:10871:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	25	3	0.63	0.93	0.0241	0.3209	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.63	0.93	0.345	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	40	MT-ND6	1162	chrM:14512:-	MT-TE	4552	chrM:14716:-	INCL_NON_REF_SPLICE	YES	5	0	0.9	1	0.0241	0.3209	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	0.9	1	0.345	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	32	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	9	0	0.8	1	0.0401	0.2567	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.2968	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	13	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1043	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1043	FALSE	369	2501	205	193	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	12	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0963	0.0321	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1284	FALSE	416	2512	207	587	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	39	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	21	3	0.67	0.93	0.0241	0.3129	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.67	0.93	0.337	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	12	3	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0963	0.0241	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1204	FALSE	13	214	14	42	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	PAIP2--PSD2	7	23	PAIP2	1394	chr5:138677669:+	PSD2	11293	chr5:139188976:+	ONLY_REF_SPLICE	YES	45	0	0.4	1	0.0562	0.1845	PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2,PSD2->chr5:139175406-139224051:+,pleckstrin_and_Sec7_domain_containing_2	BICR16_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.2407	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	29	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0.2327	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.2728	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	CTD-2008L17.1--RP11-456O19.2	11	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0883	0.0321	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.94	1	0.1204	FALSE	33	240	4	98	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	3	36	MT-ND5	2234	chrM:13570:+	MT-ND4	6098	chrM:11045:+	INCL_NON_REF_SPLICE	YES	9552	18140	0	0	0.0241	0.2888	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0	0.3129	FALSE	47	29	1	23	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	12	0	MT-TC	1009	chrM:5818:-	MT-TY	4068	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0963	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0963	FALSE	51	280	19	36	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	19	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	118	0	0.18	1	0.0562	0.1524	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.18	1	0.2086	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	10	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	16	1	0.48	0.0802	0.0401	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.48	1	0.1203	TRUE	465	1949	224	605	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	3	32	MT-ND5	2172	chrM:13508:+	MT-ND4	6088	chrM:11035:+	INCL_NON_REF_SPLICE	NO	10576	17404	0	0	0.0241	0.2567	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0	0.2808	FALSE	47	29	1	24	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	3	31	MT-ND5	2034	chrM:13370:+	MT-ND4	5917	chrM:10864:+	INCL_NON_REF_SPLICE	YES	10601	685	0	0.05	0.0241	0.2487	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.05	0.2728	FALSE	32	27	1	24	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	7	15	MT-TA	1054	chrM:5602:-	MT-TC	4006	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0.1203	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1765	FALSE	462	80	0	856	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	6	18	MT-ND5	1692	chrM:13028:+	MT-ND4	6022	chrM:10969:+	INCL_NON_REF_SPLICE	YES	9324	12881	0	0	0.0481	0.1444	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0	0.1925	FALSE	29	25	1	21	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	3	29	MT-ND5	2047	chrM:13383:+	MT-ND4	5977	chrM:10924:+	INCL_NON_REF_SPLICE	YES	10664	8355	0	0	0.0241	0.2327	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0	0.2568	FALSE	32	27	1	24	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	10	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0802	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0802	FALSE	13	214	14	42	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	6	15	MT-ND5	2303	chrM:13639:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	7840	14371	0	0	0.0481	0.1203	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0	0.1684	FALSE	47	29	1	24	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	6	15	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0.1203	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1684	FALSE	462	80	0	856	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	8	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	45	25	0.24	0.36	0.0642	0.0481	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	BICR16_UPPER_AERODIGESTIVE_TRACT	0.24	0.36	0.1123	TRUE	267	562	48	632	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	22	MT-ND4	1093	chrM:10852:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	21	3	0.55	0.9	0.0321	0.1765	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.55	0.9	0.2086	FALSE	344	826	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	25	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.88	0.0241	0.2006	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.2247	FALSE	344	821	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	13	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0481	0.1043	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.1524	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	9	1	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0.008	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0802	FALSE	51	280	19	36	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	6	12	MT-ND5	2247	chrM:13583:+	MT-ND4	6727	chrM:11674:+	INCL_NON_REF_SPLICE	YES	9099	3646	0	0	0.0481	0.0963	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0	0.1444	FALSE	47	29	1	24	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	7	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	14	1	0.52	0.0562	0.0642	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.52	1	0.1204	TRUE	458	1351	185	561	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	KDM4B--UHRF1	6	11	KDM4B	2200	chr19:5016350:+	UHRF1	39921	chr19:4929234:+	ONLY_REF_SPLICE	YES	24	69	0.41	0.2	0.0481	0.0883	YOSHIHARA_TCGA_num_samples[BRCA:2],LOCAL_REARRANGEMENT:+:[6960],KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1	BICR16_UPPER_AERODIGESTIVE_TRACT	0.2	0.41	0.1364	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	19	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	75	0	0.23	1	0.0321	0.1524	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.23	1	0.1845	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	5	15	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0.1203	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1604	FALSE	462	80	0	856	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TL1--MT-RNR2	7	7	MT-TL1	1104	chrM:3333:+	MT-RNR2	5603	chrM:3198:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.93	0.0562	0.0562	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BICR16_UPPER_AERODIGESTIVE_TRACT	0.93	1	0.1124	FALSE	7	521	16	32	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	6	10	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0.0802	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1283	FALSE	462	80	0	856	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	5	14	MT-TC	1065	chrM:5762:-	MT-TY	4101	chrM:5857:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0401	0.1123	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1524	FALSE	51	280	19	36	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	NFE2L1--CBX1	7	5	NFE2L1	8029	chr17:46134864:+	CBX1	19273	chr17:46154403:-	ONLY_REF_SPLICE	YES	2644	297	0	0.04	0.0562	0.0401	LOCAL_INVERSION:+:-:[8565],NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,CBX1->chr17:46147414-46178883:-,chromobox_1	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.04	0.0963	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	16	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0321	0.1284	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1605	FALSE	462	80	0	856	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	19	MT-ND4	1294	chrM:11053:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	NO	121	2	0.15	0.92	0.0241	0.1524	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.15	0.92	0.1765	FALSE	344	827	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	19	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	6	0	0.79	1	0.0241	0.1524	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	0.79	1	0.1765	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MLLT10--ACBD5	7	2	MLLT10	2720	chr10:21827841:+	ACBD5	40571	chr10:27520749:-	ONLY_REF_SPLICE	YES	26	28	0.26	0.24	0.0562	0.016	MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,ACBD5->acyl-CoA_binding_domain_containing_5,chr10:27484146-27531059:-	BICR16_UPPER_AERODIGESTIVE_TRACT	0.24	0.26	0.0722	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	11	5	0.42	0.62	0.0562	0.008	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.42	0.62	0.0642	FALSE	344	821	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	FAM227A--RP3-508I15.9	6	4	FAM227A	10957	chr22:39022198:-	RP3-508I15.9	38041	chr22:39064137:-	INCL_NON_REF_SPLICE	YES	0	37	1	0.21	0.0481	0.0321	LOCAL_REARRANGEMENT:-:[10956],FAM227A->chr22:38974125-39052634:-,family_with_sequence_similarity_227_member_A,RP3-508I15.9->chr22:39063590-39077825:-	BICR16_UPPER_AERODIGESTIVE_TRACT	0.21	1	0.0802	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	6	4	MT-ND5	1627	chrM:12963:+	MT-ND4	6727	chrM:11674:+	INCL_NON_REF_SPLICE	YES	6550	3646	0	0	0.0481	0.0321	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0	0.0802	FALSE	45	26	1	22	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	PLCB1--IL20RB	7	0	PLCB1	3721	chr20:8352097:+	IL20RB	62242	chr3:136728955:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0562	0	PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1,IL20RB->chr3:136665072-136729927:+,interleukin_20_receptor_subunit_beta	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0562	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	DNAJC25--UGCG	6	1	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	106	229	0.06	0.03	0.0481	0.008	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.03	0.06	0.0561	TRUE	50	73	10	50	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	13	MT-ND6	1111	chrM:14563:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0241	0.1043	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.1284	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	1	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0481	0.008	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.0561	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	NIPBL--NUP155	6	1	NIPBL	1420	chr5:36877280:+	NUP155	80894	chr5:37305312:-	ONLY_REF_SPLICE	YES	16	81	0.3	0.08	0.0481	0.008	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,NUP155->chr5:37288239-37371283:-,nucleoporin_155kDa	BICR16_UPPER_AERODIGESTIVE_TRACT	0.08	0.3	0.0561	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0481	FALSE	344	821	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	5	4	MT-TA	1034	chrM:5622:-	MT-TC	4085	chrM:5811:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0.0321	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0722	FALSE	462	80	0	856	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	NOSIP--NAP1L1	6	0	NOSIP	4422	chr19:50080016:-	NAP1L1	27836	chr12:76444433:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0481	0	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Spleen=[count:1=pct:0.9],Testis=[count:1=pct:1.0]},GTEx_v2:{count=15;pct=0.17%;dist=Muscle_-_Skeletal=2,Heart_-_Left_Ventricle=2,Stomach=1,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Lung=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Spleen=1,Testis=1,Cells_-_Transformed_fibroblasts=1},NOSIP->chr19:50058968-50093519:-,nitric_oxide_synthase_interacting_protein,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0481	TRUE	2	9	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	CTD-2337A12.1--CAST	5	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	88	1	0.07	0.0401	0.016	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.0561	TRUE	347	1186	183	220	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-CO1--KRT6A	5	2	MT-CO1	1597	chrM:6500:+	KRT6A	5569	chr12:52887015:-	INCL_NON_REF_SPLICE	YES	19953	0	0	1	0.0401	0.016	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	BICR16_UPPER_AERODIGESTIVE_TRACT	0	1	0.0561	FALSE	7	19	2	8	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	4	6	MT-ND5	1609	chrM:12945:+	MT-ND4	6590	chrM:11537:+	INCL_NON_REF_SPLICE	YES	5676	12315	0	0	0.0321	0.0481	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0	0.0802	FALSE	45	26	1	22	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	10	MT-ND6	1170	chrM:14504:-	MT-TE	4591	chrM:14677:-	INCL_NON_REF_SPLICE	YES	7	0	0.65	1	0.0241	0.0802	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	0.65	1	0.1043	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	5	2	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0.016	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0561	FALSE	13	214	14	42	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	THBS1--MT-ND2	5	2	THBS1	9159	chr15:39881485:+	MT-ND2	23101	chrM:5229:+	INCL_NON_REF_SPLICE	YES	1900	683	0	0.01	0.0401	0.016	THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0561	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	3	9	MT-ND5	1576	chrM:12912:+	MT-ND4	6122	chrM:11069:+	INCL_NON_REF_SPLICE	YES	3832	20321	0	0	0.0241	0.0722	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0	0.0963	FALSE	45	26	1	22	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	3	9	MT-ND5	1701	chrM:13037:+	MT-ND4	6333	chrM:11280:+	INCL_NON_REF_SPLICE	YES	10286	25339	0	0	0.0241	0.0722	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0	0.0963	FALSE	47	27	1	22	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	IGFBP7--MT-ND4L	5	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0401	FALSE	1	0	0	30	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0401	FALSE	351	233	23	137	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	3	8	MT-ND5	1403	chrM:12739:+	MT-ND4	6038	chrM:10985:+	INCL_NON_REF_SPLICE	YES	715	13810	0.02	0	0.0241	0.0642	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.02	0.0883	FALSE	17	23	0	20	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0401	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0401	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0401	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	5	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0401	FALSE	369	2501	205	193	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0401	TRUE	22	156	2	142	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	DGKG--RGS7	4	2	DGKG	24575	chr3:185929584:-	RGS7	46743	chr1:241262062:-	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.0321	0.016	DGKG->chr3:185823457-186080026:-,diacylglycerol_kinase_gamma,RGS7->chr1:240931554-241520530:-,regulator_of_G-protein_signaling_7	BICR16_UPPER_AERODIGESTIVE_TRACT	0.46	1	0.0481	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	FAM227A--RP3-508I15.9	4	2	FAM227A	10941	chr22:39022214:-	RP3-508I15.9	38041	chr22:39064137:-	INCL_NON_REF_SPLICE	YES	0	37	1	0.14	0.0321	0.016	LOCAL_REARRANGEMENT:-:[10956],FAM227A->chr22:38974125-39052634:-,family_with_sequence_similarity_227_member_A,RP3-508I15.9->chr22:39063590-39077825:-	BICR16_UPPER_AERODIGESTIVE_TRACT	0.14	1	0.0481	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	KRT5--MT-CO3	3	5	KRT5	1489	chr12:52913983:-	MT-CO3	10505	chrM:9598:+	INCL_NON_REF_SPLICE	YES	7036	22817	0	0	0.0241	0.0401	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0	0.0642	FALSE	0	0	0	18	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	4	1	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	NO	71	23	0.07	0.18	0.0321	0.008	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR16_UPPER_AERODIGESTIVE_TRACT	0.07	0.18	0.0401	FALSE	351	233	23	137	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	1	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	8	5	0.38	0.5	0.0321	0.008	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.38	0.5	0.0401	FALSE	344	821	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	4	1	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0321	0.008	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0401	FALSE	51	280	19	36	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	FTH1--ACTB	4	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0321	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0321	TRUE	1	0	0	97	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND5--MT-ND4	4	0	MT-ND5	1089	chrM:12425:+	MT-ND4	7085	chrM:12032:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0321	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0321	FALSE	9	6	1	10	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0321	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0321	FALSE	369	2501	205	193	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TL1--MT-RNR2	4	0	MT-TL1	1038	chrM:3267:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0321	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0321	FALSE	7	521	16	32	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	2	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.016	0.0642	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.91	1	0.0802	FALSE	275	511	55	178	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	2	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.016	0.0642	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.91	1	0.0802	FALSE	407	2205	196	549	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	3	3	MT-TA	1053	chrM:5603:-	MT-TY	4088	chrM:5873:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0241	0.0241	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0482	FALSE	13	214	14	42	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	LDLRAD3--PRR5L	3	2	LDLRAD3	5673	chr11:36120011:+	PRR5L	20830	chr11:36350668:+	ONLY_REF_SPLICE	YES	33	0	0.13	1	0.0241	0.016	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	BICR16_UPPER_AERODIGESTIVE_TRACT	0.13	1	0.0401	FALSE	2	24	3	12	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-CO1--KRT6A	3	2	MT-CO1	1592	chrM:6495:+	KRT6A	5560	chr12:52887024:-	INCL_NON_REF_SPLICE	YES	19517	0	0	1	0.0241	0.016	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	BICR16_UPPER_AERODIGESTIVE_TRACT	0	1	0.0401	FALSE	7	19	2	8	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	3	2	MT-TA	1044	chrM:5612:-	MT-TY	4079	chrM:5882:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0241	0.016	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0401	FALSE	13	214	14	42	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--MID1	3	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	32	0.71	0.14	0.0241	0.016	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	BICR16_UPPER_AERODIGESTIVE_TRACT	0.14	0.71	0.0401	FALSE	16	356	14	466	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	AC131097.3--AC093642.5	3	1	AC131097.3	2273	chr2:242824786:+	AC093642.5	11670	chr2:243037038:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0.008	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0321	FALSE	3	20	2	16	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	1	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	10	2	0.29	0.67	0.0241	0.008	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	0.29	0.67	0.0321	FALSE	344	821	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	1	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0241	0.008	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	0.8	1	0.0321	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TY	3	1	MT-TA	1016	chrM:5640:-	MT-TY	4072	chrM:5889:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0241	0.008	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0321	FALSE	13	214	14	42	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	RNF152--RP11-879F14.1	3	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	6	0	0.4	1	0.0241	0.008	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	BICR16_UPPER_AERODIGESTIVE_TRACT	0.4	1	0.0321	FALSE	275	472	65	43	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--MID1	3	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	32	0.4	0.11	0.0241	0.008	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	BICR16_UPPER_AERODIGESTIVE_TRACT	0.11	0.4	0.0321	FALSE	0	48	1	163	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	COA1--STK17A	3	0	COA1	1289	chr7:43769028:-	STK17A	27976	chr7:43635500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	NEIGHBORS_OVERLAP:-:+:[18330],COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,STK17A->chr7:43622357-43666385:+,serine/threonine_kinase_17a	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0241	FALSE	0	3	1	13	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	ECI1--TMEM204	3	0	ECI1	3113	chr16:2296860:-	TMEM204	15251	chr16:1604783:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	ECI1->chr16:2289396-2302301:-,enoyl-CoA_delta_isomerase_1,TMEM204->chr16:1578689-1605581:+,transmembrane_protein_204	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	FTH1--ACTB	3	0	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0241	TRUE	1	0	0	97	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1015	chrM:10774:+	MT-ND4L	5613	chrM:10704:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0241	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0241	FALSE	344	821	44	306	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1014	chrM:14660:-	MT-TE	4552	chrM:14716:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0241	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0241	FALSE	499	1288	110	792	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	PTPN1--CDH4	3	0	PTPN1	1237	chr20:49127127:+	CDH4	18910	chr20:60318619:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	PTPN1->chr20:49126891-49201299:+,protein_tyrosine_phosphatase,_non-receptor_type_1,CDH4->cadherin_4,chr20:59827482-60515673:+	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	RP11-624L4.1--RP11-265N7.1	2	2	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	20	0	0.17	1	0.016	0.016	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	BICR16_UPPER_AERODIGESTIVE_TRACT	0.17	1	0.032	FALSE	0	20	1	20	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	ATF7IP--RP11-695J4.2	2	1	ATF7IP	1152	chr12:14518761:+	RP11-695J4.2	37728	chr12:14772672:+	ONLY_REF_SPLICE	YES	78	16	0.04	0.16	0.016	0.008	NEIGHBORS[68987],ATF7IP->Oncogene{Bushman},activating_transcription_factor_7_interacting_protein,chr12:14518610-14651697:+,RP11-695J4.2->chr12:14720684-14772689:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.04	0.16	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	FARS2--RP3-380B8.4	2	1	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	YES	6	0	0.33	1	0.016	0.008	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.33	1	0.024	FALSE	27	82	4	18	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	APOLD1--CNOT1	2	0	APOLD1	1457	chr12:12879307:+	CNOT1	40116	chr16:58592578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	APOLD1->apolipoprotein_L_domain_containing_1,chr12:12878851-12982909:+,CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	EFNB2--ARGLU1	2	0	EFNB2	1272	chr13:107187191:-	ARGLU1	14927	chr13:107212005:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[6559],EFNB2->chr13:107142079-107187462:-,ephrin_B2,ARGLU1->arginine_and_glutamate_rich_1,chr13:107194021-107220512:-	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.016	TRUE	1	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MBD2--RPS27A	2	0	MBD2	10258	chr18:51686135:-	RPS27A	17774	chr2:55459944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MIB1--CD27-AS1	2	0	MIB1	25475	chr18:19438607:+	CD27-AS1	38163	chr12:6557923:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	MIB1->chr18:19284918-19450918:+,mindbomb_E3_ubiquitin_protein_ligase_1,CD27-AS1->CD27_antisense_RNA_1,chr12:6548167-6560733:-	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.016	TRUE	477	1352	189	275	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.016	TRUE	274	363	69	150	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	SAMD5--SASH1	2	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.016	TRUE	53	396	64	110	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	SLC25A36--C9orf3	2	0	SLC25A36	5624	chr3:140682069:+	C9orf3	56869	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},SLC25A36->chr3:140660672-140698775:+,solute_carrier_family_25_member_36,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	NFE2L1--CBX1	1	2	NFE2L1	8029	chr17:46134864:+	CBX1	20136	chr17:46153540:-	ONLY_REF_SPLICE	NO	2644	253	0	0.01	0.008	0.016	LOCAL_INVERSION:+:-:[8565],NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,CBX1->chr17:46147414-46178883:-,chromobox_1	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	NFE2L1--CBX1	1	2	NFE2L1	8029	chr17:46134864:+	CBX1	21214	chr17:46152462:-	ONLY_REF_SPLICE	YES	2644	193	0	0.02	0.008	0.016	LOCAL_INVERSION:+:-:[8565],NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,CBX1->chr17:46147414-46178883:-,chromobox_1	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.02	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	PARL--ATP11B	1	2	PARL	1212	chr3:183602510:-	ATP11B	47121	chr3:182631649:+	ONLY_REF_SPLICE	NO	378	140	0.01	0.02	0.008	0.016	PARL->chr3:183547173-183602721:-,presenilin_associated_rhomboid_like,ATP11B->ATPase_phospholipid_transporting_11B_(putative),chr3:182511288-182639423:+	BICR16_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	AC131097.3--AC093642.5	1	1	AC131097.3	2273	chr2:242824786:+	AC093642.5	12811	chr2:243056790:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.008	0.008	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	BICR16_UPPER_AERODIGESTIVE_TRACT	1	1	0.016	FALSE	2	37	1	16	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	DSC3--CSDE1	1	1	DSC3	9827	chr18:28598037:-	CSDE1	32555	chr1:115282346:-	ONLY_REF_SPLICE	NO	184	564	0.01	0	0.008	0.008	DSC3->chr18:28569974-28622781:-,desmocollin_3,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	EFCAB11--AC003665.1	1	1	EFCAB11	7383	chr14:90397885:-	AC003665.1	26011	chr17:45995937:-	ONLY_REF_SPLICE	NO	40	0	0.05	1	0.008	0.008	EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,AC003665.1->chr17:45974696-46018776:-	BICR16_UPPER_AERODIGESTIVE_TRACT	0.05	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	ENO1--MKI67	1	1	ENO1	7014	chr1:8928047:-	MKI67	19451	chr10:129917583:-	ONLY_REF_SPLICE	YES	3858	81	0	0.02	0.008	0.008	ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.02	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	MRPS18C--SCD5	1	1	MRPS18C	2027	chr4:84378111:+	SCD5	21412	chr4:83557976:-	ONLY_REF_SPLICE	YES	472	142	0	0.01	0.008	0.008	MRPS18C->chr4:84377085-84390888:+,mitochondrial_ribosomal_protein_S18C,SCD5->chr4:83550692-83720010:-,stearoyl-CoA_desaturase_5	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	NFE2L1--CBX1	1	1	NFE2L1	8029	chr17:46134864:+	CBX1	22389	chr17:46148941:-	ONLY_REF_SPLICE	YES	2644	273	0	0.01	0.008	0.008	LOCAL_INVERSION:+:-:[8565],NFE2L1->chr17:46125691-46138849:+,nuclear_factor,_erythroid_2_like_1,CBX1->chr17:46147414-46178883:-,chromobox_1	BICR16_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	PHF20L1--IRF2BP2	1	1	PHF20L1	24869	chr8:133837616:+	IRF2BP2	41889	chr1:234743598:-	ONLY_REF_SPLICE	YES	40	183	0.05	0.01	0.008	0.008	PHF20L1->PHD_finger_protein_20-like_1,chr8:133787618-133861052:+,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	BICR16_UPPER_AERODIGESTIVE_TRACT	0.01	0.05	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	PROSC--CHMP1A	1	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	81	392	0.02	0.01	0.008	0.008	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	BICR16_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.016	FALSE	13	55	3	29	0	FALSE	ACH-000503
BICR16_UPPER_AERODIGESTIVE_TRACT	SEPT11--CCNI	1	1	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	195	221	0.01	0.01	0.008	0.008	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	BICR16_UPPER_AERODIGESTIVE_TRACT	0.01	0.01	0.016	FALSE	0	1	0	17	0	FALSE	ACH-000503
TE11_OESOPHAGUS	FHOD3--MOCOS	147	43	FHOD3	5633	chr18:34092506:+	MOCOS	53610	chr18:33836931:+	ONLY_REF_SPLICE	YES	12	28	0.94	0.87	1.5283	0.4471	LOCAL_REARRANGEMENT:+:[25557],FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,MOCOS->chr18:33767482-33852120:+,molybdenum_cofactor_sulfurase	TE11_OESOPHAGUS	0.87	0.94	1.9754	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	NHSL1--MAP7	85	43	NHSL1	11203	chr6:138768138:-	MAP7	28659	chr6:136742937:-	ONLY_REF_SPLICE	YES	13	5	0.91	0.96	0.8837	0.4471	NHSL1->NHS_like_1,chr6:138743180-139013708:-,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	TE11_OESOPHAGUS	0.91	0.96	1.3308	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-TA--MT-TN	89	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9253	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TE11_OESOPHAGUS	1	1	0.9253	FALSE	369	2501	205	193	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND1--MT-RNR2	88	3	MT-ND1	1396	chrM:3702:+	MT-RNR2	6126	chrM:2840:+	INCL_NON_REF_SPLICE	NO	143	317	0.39	0.22	0.9149	0.0312	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE11_OESOPHAGUS	0.22	0.39	0.9461	FALSE	92	22	4	61	0	FALSE	ACH-000488
TE11_OESOPHAGUS	SUN1--FAM133B	77	31	SUN1	26402	chr7:912199:+	FAM133B	48151	chr7:92199229:-	ONLY_REF_SPLICE	YES	188	99	0.36	0.52	0.8006	0.3223	SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+,FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B	TE11_OESOPHAGUS	0.36	0.52	1.1229	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	FANCI--RNF135	63	54	FANCI	25566	chr15:89838325:+	RNF135	47704	chr17:29324260:+	ONLY_REF_SPLICE	YES	145	20	0.45	0.85	0.655	0.5614	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,RNF135->chr17:29295803-29326929:+,ring_finger_protein_135	TE11_OESOPHAGUS	0.45	0.85	1.2164	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	TIMM23B--LINC00843	67	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6966	0.1767	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TE11_OESOPHAGUS	1	1	0.8733	TRUE	508	994	45	981	0	FALSE	ACH-000488
TE11_OESOPHAGUS	KRT5--NCL	69	1	KRT5	1659	chr12:52913813:-	NCL	12524	chr2:232328853:-	INCL_NON_REF_SPLICE	YES	8052	3010	0.01	0.02	0.7174	0.0104	GTEx&tcga_normals:6/3694=0.16%,KRT5->chr12:52908359-52914471:-,keratin_5,NCL->chr2:232318242-232348352:-,nucleolin	TE11_OESOPHAGUS	0.01	0.02	0.7278	TRUE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	58	41	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2715	0	0.04	1	0.603	0.4263	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.04	1	1.0293	FALSE	344	827	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	26	161	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	14257	0	0.01	1	0.2703	1.6739	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.01	1	1.9442	FALSE	344	827	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	3	252	MT-ND4	2279	chrM:12038:+	MT-ND4L	5519	chrM:10610:+	INCL_NON_REF_SPLICE	NO	199	0	0.56	1	0.0312	2.62	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.56	1	2.6512	FALSE	288	732	40	297	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	6	231	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	91	0	0.72	1	0.0624	2.4017	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.72	1	2.4641	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	22	163	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	13	0	0.93	1	0.2287	1.6947	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.93	1	1.9234	FALSE	344	821	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	5	230	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	47	0	0.83	1	0.052	2.3913	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.83	1	2.4433	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	61	1	MT-ND4	1151	chrM:10910:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	NO	17397	409	0	0.13	0.6342	0.0104	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.13	0.6446	FALSE	230	193	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RP11-123O10.4--GRIP1	56	20	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.5822	0.2079	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TE11_OESOPHAGUS	0.99	1	0.7901	FALSE	416	2512	207	587	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	3	231	MT-ND4	1205	chrM:10964:+	MT-ND4L	5494	chrM:10585:+	INCL_NON_REF_SPLICE	YES	102	0	0.7	1	0.0312	2.4017	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.7	1	2.4329	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	4	226	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	38	0	0.86	1	0.0416	2.3497	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.86	1	2.3913	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	3	229	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	111	0	0.68	1	0.0312	2.3809	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.68	1	2.4121	FALSE	344	827	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	4	222	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	22	0	0.91	1	0.0416	2.3081	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.91	1	2.3497	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	KRT5--NCL	54	1	KRT5	1764	chr12:52913708:-	NCL	21135	chr2:232320216:-	INCL_NON_REF_SPLICE	YES	10365	1430	0.01	0.04	0.5614	0.0104	GTEx&tcga_normals:6/3694=0.16%,KRT5->chr12:52908359-52914471:-,keratin_5,NCL->chr2:232318242-232348352:-,nucleolin	TE11_OESOPHAGUS	0.01	0.04	0.5718	TRUE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	B3GNTL1--OGFOD3	48	20	B3GNTL1	6043	chr17:80972330:-	OGFOD3	37219	chr17:80350410:-	ONLY_REF_SPLICE	YES	3	35	0.96	0.66	0.499	0.2079	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-	TE11_OESOPHAGUS	0.66	0.96	0.7069	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	39	39	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	107	0	0.42	1	0.4055	0.4055	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.42	1	0.811	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	3	183	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	16	0	0.92	1	0.0312	1.9026	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.92	1	1.9338	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	ACTN4--RYR1	43	8	ACTN4	10448	chr19:39205201:+	RYR1	95231	chr19:39051753:+	ONLY_REF_SPLICE	YES	612	0	0.08	1	0.4471	0.0832	LOCAL_REARRANGEMENT:+:[60085],ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	TE11_OESOPHAGUS	0.08	1	0.5303	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	3	156	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	23	0	0.87	1	0.0312	1.6219	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.87	1	1.6531	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	3	152	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	24	0	0.87	1	0.0312	1.5803	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.87	1	1.6115	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	4	147	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	292	0	0.34	1	0.0416	1.5283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.34	1	1.5699	FALSE	344	827	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	39	4	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	22151	6	0	0.88	0.4055	0.0416	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.88	0.4471	FALSE	230	193	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	3	147	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	263	0	0.36	1	0.0312	1.5283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.36	1	1.5595	FALSE	344	827	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	3	141	MT-ND4	1061	chrM:10820:+	MT-ND4L	5392	chrM:10483:+	INCL_NON_REF_SPLICE	YES	10	0	0.94	1	0.0312	1.466	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.94	1	1.4972	FALSE	344	821	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND6--MT-TE	35	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3639	0.0416	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE11_OESOPHAGUS	1	1	0.4055	FALSE	499	1288	110	792	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	22	54	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	21651	0	0	1	0.2287	0.5614	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0	1	0.7901	FALSE	328	800	43	304	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-TA--MT-TC	34	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3535	0.0312	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE11_OESOPHAGUS	1	1	0.3847	FALSE	462	80	0	856	0	FALSE	ACH-000488
TE11_OESOPHAGUS	TIMM23--RP11-464F9.1	34	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	266	2	0.12	0.95	0.3535	0.0104	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TE11_OESOPHAGUS	0.12	0.95	0.3639	TRUE	519	3926	326	965	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	4	112	MT-ND4	1144	chrM:10903:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	38	0	0.75	1	0.0416	1.1644	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.75	1	1.206	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	NHSL1--MAP7	16	55	NHSL1	12546	chr6:138763120:-	MAP7	28659	chr6:136742937:-	ONLY_REF_SPLICE	YES	10	5	0.88	0.93	0.1663	0.5718	NHSL1->NHS_like_1,chr6:138743180-139013708:-,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	TE11_OESOPHAGUS	0.88	0.93	0.7381	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	ZNF654--HMGB2	28	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2911	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	TE11_OESOPHAGUS	1	1	0.2911	TRUE	0	0	0	518	0	FALSE	ACH-000488
TE11_OESOPHAGUS	NF1--INA	23	15	NF1	1443	chr17:29422387:+	INA	79729	chr10:105046792:+	ONLY_REF_SPLICE	YES	23	2	0.62	0.95	0.2391	0.156	NF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:29421945-29709134:+,neurofibromin_1,INA->chr10:105036920-105050108:+,internexin_neuronal_intermediate_filament_protein_alpha	TE11_OESOPHAGUS	0.62	0.95	0.3951	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-ND6--MT-TE	19	27	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.1975	0.2807	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE11_OESOPHAGUS	0.94	1	0.4782	FALSE	499	1288	110	792	0	FALSE	ACH-000488
TE11_OESOPHAGUS	FANCI--RNF135	11	56	FANCI	25566	chr15:89838325:+	RNF135	46639	chr17:29320858:+	ONLY_REF_SPLICE	YES	145	24	0.32	0.74	0.1144	0.5822	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,RNF135->chr17:29295803-29326929:+,ring_finger_protein_135	TE11_OESOPHAGUS	0.32	0.74	0.6966	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	3	88	MT-ND4	1112	chrM:10871:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	23	0	0.8	1	0.0312	0.9149	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.8	1	0.9461	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	6	70	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	13	0	0.85	1	0.0624	0.7278	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.85	1	0.7902	FALSE	344	821	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	21	9	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.2183	0.0936	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	TE11_OESOPHAGUS	0.97	1	0.3119	FALSE	20	187	4	79	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	13	41	MT-ND4	1452	chrM:11211:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1286	0	0.04	1	0.1352	0.4263	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.04	1	0.5615	FALSE	344	827	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	22	4	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22225	12	0	0.68	0.2287	0.0416	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.68	0.2703	FALSE	230	198	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	HSP90AB1--MT-RNR2	22	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4918	0	0	1	0.2287	0.0104	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE11_OESOPHAGUS	0	1	0.2391	FALSE	13	9	0	364	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	21	4	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	17397	2	0	0.93	0.2183	0.0416	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.93	0.2599	FALSE	230	193	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RPS6KB1--VMP1	19	11	RPS6KB1	9551	chr17:58007535:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	48	186	0.38	0.14	0.1975	0.1144	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TE11_OESOPHAGUS	0.14	0.38	0.3119	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	C15orf57--CBX3	18	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	44	40	0.37	0.39	0.1871	0.0832	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TE11_OESOPHAGUS	0.37	0.39	0.2703	TRUE	267	562	48	632	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-TA--MT-TN	9	44	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0936	0.4575	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TE11_OESOPHAGUS	1	1	0.5511	FALSE	369	2501	205	193	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	9	41	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1664	0	0.03	1	0.0936	0.4263	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.03	1	0.5199	FALSE	344	827	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	17	8	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	30579	1	0	0.96	0.1767	0.0832	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.96	0.2599	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	NPM1P24--SET	19	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1975	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TE11_OESOPHAGUS	1	1	0.1975	TRUE	0	0	0	434	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	3	62	MT-ND4	1125	chrM:10884:+	MT-ND4L	5651	chrM:10742:+	INCL_NON_REF_SPLICE	YES	27	0	0.71	1	0.0312	0.6446	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.71	1	0.6758	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND6--MT-TE	17	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1767	0.0624	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE11_OESOPHAGUS	1	1	0.2391	FALSE	499	1288	110	792	0	FALSE	ACH-000488
TE11_OESOPHAGUS	HSP90AB1--MT-RNR2	18	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4888	0	0	1	0.1871	0.0104	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE11_OESOPHAGUS	0	1	0.1975	FALSE	13	9	0	364	0	FALSE	ACH-000488
TE11_OESOPHAGUS	C15orf57--CBX3	15	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	44	40	0.38	0.4	0.156	0.1248	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	TE11_OESOPHAGUS	0.38	0.4	0.2808	TRUE	267	562	48	632	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	4	52	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	13440	0	0	1	0.0416	0.5406	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0	1	0.5822	FALSE	344	827	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-TA--MT-TN	4	52	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0.5406	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TE11_OESOPHAGUS	1	1	0.5822	FALSE	369	2501	205	193	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-TA--MT-TN	17	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1767	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TE11_OESOPHAGUS	1	1	0.1767	FALSE	369	2501	205	193	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	9	30	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	87	0	0.31	1	0.0936	0.3119	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.31	1	0.4055	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	3	53	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0312	0.551	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.98	1	0.5822	FALSE	344	821	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-TA--MT-TN	12	17	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1248	0.1767	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TE11_OESOPHAGUS	1	1	0.3015	FALSE	369	2501	205	193	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	3	52	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	2466	0	0.02	1	0.0312	0.5406	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.02	1	0.5718	FALSE	344	827	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	6	39	MT-ND4	1213	chrM:10972:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	107	0	0.3	1	0.0624	0.4055	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.3	1	0.4679	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	FANCI--RNF135	13	10	FANCI	23535	chr15:89836294:+	RNF135	47704	chr17:29324260:+	ONLY_REF_SPLICE	YES	168	20	0.12	0.53	0.1352	0.104	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,RNF135->chr17:29295803-29326929:+,ring_finger_protein_135	TE11_OESOPHAGUS	0.12	0.53	0.2392	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	15	2	MT-ND4	1152	chrM:10911:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	17452	3	0	0.85	0.156	0.0208	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.85	0.1768	FALSE	230	193	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	3	49	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	89	0	0.37	1	0.0312	0.5094	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.37	1	0.5406	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	3	49	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	79	0	0.4	1	0.0312	0.5094	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.4	1	0.5406	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	5	39	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	213	0	0.17	1	0.052	0.4055	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.17	1	0.4575	FALSE	344	827	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	13	6	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	22151	2	0	0.9	0.1352	0.0624	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.9	0.1976	FALSE	230	193	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	CCND1--MT-ND1	12	9	CCND1	1290	chr11:69456144:+	MT-ND1	12240	chrM:3322:+	INCL_NON_REF_SPLICE	YES	3812	0	0.01	1	0.1248	0.0936	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	TE11_OESOPHAGUS	0.01	1	0.2184	FALSE	0	0	0	5	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND6--MT-TE	5	36	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.052	0.3743	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE11_OESOPHAGUS	0.93	1	0.4263	FALSE	499	1288	110	792	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-TA--MT-TN	5	36	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0.3743	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TE11_OESOPHAGUS	1	1	0.4263	FALSE	369	2501	205	193	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND1--MT-RNR2	8	23	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	55	0	0.36	1	0.0832	0.2391	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE11_OESOPHAGUS	0.36	1	0.3223	FALSE	114	26	4	85	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	4	39	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	104	0	0.29	1	0.0416	0.4055	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.29	1	0.4471	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	11	10	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	29605	12	0	0.64	0.1144	0.104	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.64	0.2184	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-TA--MT-TN	4	37	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0.3847	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TE11_OESOPHAGUS	1	1	0.4263	FALSE	369	2501	205	193	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	9	16	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	26237	133	0	0.16	0.0936	0.1663	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.16	0.2599	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	9	16	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	29603	0	0	1	0.0936	0.1663	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	1	0.2599	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	5	32	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	9	0	0.8	1	0.052	0.3327	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.8	1	0.3847	FALSE	344	821	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RPS6KB1--VMP1	10	12	RPS6KB1	11099	chr17:58009083:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	38	186	0.37	0.11	0.104	0.1248	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TE11_OESOPHAGUS	0.11	0.37	0.2288	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-ND6--MT-TE	3	39	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0312	0.4055	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE11_OESOPHAGUS	0.95	1	0.4367	FALSE	499	1288	110	792	0	FALSE	ACH-000488
TE11_OESOPHAGUS	FANCI--RNF135	8	18	FANCI	24469	chr15:89837228:+	RNF135	47704	chr17:29324260:+	ONLY_REF_SPLICE	YES	176	20	0.13	0.57	0.0832	0.1871	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,RNF135->chr17:29295803-29326929:+,ring_finger_protein_135	TE11_OESOPHAGUS	0.13	0.57	0.2703	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	7	21	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	27452	1	0	0.97	0.0728	0.2183	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.97	0.2911	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	8	17	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4033	133	0.01	0.16	0.0832	0.1767	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0.01	0.16	0.2599	FALSE	216	209	16	281	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	11	4	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22151	12	0	0.56	0.1144	0.0416	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.56	0.156	FALSE	230	193	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	8	16	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	26237	322	0	0.07	0.0832	0.1663	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.07	0.2495	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND1--MT-RNR2	6	23	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	54	0	0.35	1	0.0624	0.2391	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE11_OESOPHAGUS	0.35	1	0.3015	FALSE	114	26	4	85	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	9	11	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	89	0	0.18	1	0.0936	0.1144	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.18	1	0.208	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	9	9	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	29880	2	0	0.9	0.0936	0.0936	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.9	0.1872	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	9	9	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	29880	1	0	0.95	0.0936	0.0936	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.95	0.1872	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	SUN1--FAM133B	3	32	SUN1	27682	chr7:913479:+	FAM133B	48151	chr7:92199229:-	INCL_NON_REF_SPLICE	YES	225	99	0.13	0.26	0.0312	0.3327	SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+,FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B	TE11_OESOPHAGUS	0.13	0.26	0.3639	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-ND6--MT-TE	3	30	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0312	0.3119	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE11_OESOPHAGUS	0.92	1	0.3431	FALSE	499	1288	110	792	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MPZL1--POU2F1	9	4	MPZL1	2051	chr1:167691479:+	POU2F1	42394	chr1:167381196:+	ONLY_REF_SPLICE	YES	236	15	0.05	0.46	0.0936	0.0416	MPZL1->chr1:167690429-167761156:+,myelin_protein_zero_like_1,POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+	TE11_OESOPHAGUS	0.05	0.46	0.1352	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	7	12	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	29102	2	0	0.9	0.0728	0.1248	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.9	0.1976	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND6--MT-TE	3	28	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0312	0.2911	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE11_OESOPHAGUS	0.91	1	0.3223	FALSE	499	1288	110	792	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND6--MT-TE	10	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.104	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE11_OESOPHAGUS	1	1	0.104	FALSE	499	1288	110	792	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	4	23	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	69	2	0.28	0.93	0.0416	0.2391	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0.28	0.93	0.2807	FALSE	213	207	15	279	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	27	MT-ND4	2258	chrM:12017:+	MT-ATP8	5406	chrM:8393:+	INCL_NON_REF_SPLICE	YES	2822	0	0.01	1	0.0312	0.2807	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0.01	1	0.3119	FALSE	216	209	16	281	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-TA--MT-TN	6	15	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0624	0.156	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TE11_OESOPHAGUS	1	1	0.2184	FALSE	369	2501	205	193	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	4	22	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	28584	0	0	1	0.0416	0.2287	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	1	0.2703	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	6	12	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	28468	133	0	0.12	0.0624	0.1248	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.12	0.1872	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	23	MT-ND4	2214	chrM:11973:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	8756	0	0	1	0.0312	0.2391	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	1	0.2703	FALSE	222	211	16	282	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	8	3	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	23919	2211	0	0	0.0832	0.0312	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0	0.1144	FALSE	231	204	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	5	15	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	29042	0	0	1	0.052	0.156	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	1	0.208	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	6	11	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	245	0	0.06	1	0.0624	0.1144	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.06	1	0.1768	FALSE	344	827	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	22	MT-ND4	1959	chrM:11718:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	28149	1	0	0.96	0.0312	0.2287	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.96	0.2599	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	SLC7A5--MT-ND1	8	2	SLC7A5	13719	chr16:87864490:-	MT-ND1	17596	chrM:3322:+	INCL_NON_REF_SPLICE	YES	2151	0	0	1	0.0832	0.0208	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	TE11_OESOPHAGUS	0	1	0.104	FALSE	0	0	0	11	0	FALSE	ACH-000488
TE11_OESOPHAGUS	YWHAZ--ZNF706	8	2	YWHAZ	2460	chr8:101964157:-	ZNF706	24352	chr8:102213971:-	ONLY_REF_SPLICE	YES	1087	1199	0.01	0.01	0.0832	0.0208	GTEx_FI:{Skin=[count:2=pct:0.6],Blood=[count:2=pct:1.1],Esophagus=[count:1=pct:0.2],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},YWHAZ->chr8:101928753-101965616:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_zeta,ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706	TE11_OESOPHAGUS	0.01	0.01	0.104	TRUE	5	5	0	7	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	4	17	MT-ND4	1828	chrM:11587:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	28468	1	0	0.95	0.0416	0.1767	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.95	0.2183	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	21	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	28803	2	0	0.92	0.0312	0.2183	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.92	0.2495	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	6	9	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	29966	2	0	0.88	0.0624	0.0936	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.88	0.156	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND3--MT-ATP8	8	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0832	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	1	1	0.0832	FALSE	351	233	23	137	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	6	8	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	29215	1828	0	0.01	0.0624	0.0832	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.01	0.1456	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-TA--MT-TN	8	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0832	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TE11_OESOPHAGUS	1	1	0.0832	FALSE	369	2501	205	193	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RP11-662B19.2--WDR37	8	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0832	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	TE11_OESOPHAGUS	1	1	0.0832	TRUE	31	42	1	25	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-CO1--KRT6A	7	3	MT-CO1	1575	chrM:6478:+	KRT6A	5543	chr12:52887041:-	INCL_NON_REF_SPLICE	YES	34874	0	0	1	0.0728	0.0312	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	TE11_OESOPHAGUS	0	1	0.104	FALSE	7	19	2	8	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	4	15	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	29404	2	0	0.9	0.0416	0.156	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.9	0.1976	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	FANCI--RNF135	3	18	FANCI	24469	chr15:89837228:+	RNF135	46639	chr17:29320858:+	ONLY_REF_SPLICE	YES	176	24	0.11	0.47	0.0312	0.1871	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,RNF135->chr17:29295803-29326929:+,ring_finger_protein_135	TE11_OESOPHAGUS	0.11	0.47	0.2183	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	3	18	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0.1871	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	1	1	0.2183	FALSE	344	821	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RPS6KB1--VMP1	7	2	RPS6KB1	1240	chr17:57970686:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	92	186	0.09	0.05	0.0728	0.0208	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TE11_OESOPHAGUS	0.05	0.09	0.0936	TRUE	0	9	0	10	6	TRUE	ACH-000488
TE11_OESOPHAGUS	WDR59--LDHD	7	2	WDR59	31017	chr16:74923601:-	LDHD	41996	chr16:75148063:-	ONLY_REF_SPLICE	YES	59	6	0.13	0.6	0.0728	0.0208	WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-,LDHD->chr16:75145758-75150669:-,lactate_dehydrogenase_D	TE11_OESOPHAGUS	0.13	0.6	0.0936	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	KRT5--NCL	7	1	KRT5	1728	chr12:52913744:-	NCL	21135	chr2:232320216:-	INCL_NON_REF_SPLICE	YES	9124	1430	0	0.01	0.0728	0.0104	GTEx&tcga_normals:6/3694=0.16%,KRT5->chr12:52908359-52914471:-,keratin_5,NCL->chr2:232318242-232348352:-,nucleolin	TE11_OESOPHAGUS	0	0.01	0.0832	FALSE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	6	5	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	30386	133	0	0.08	0.0624	0.052	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.08	0.1144	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	BCAM--PPARD	7	0	BCAM	1136	chr19:45312463:+	PPARD	19397	chr6:35391723:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0728	0	BCAM->basal_cell_adhesion_molecule_(Lutheran_blood_group),chr19:45312328-45324673:+,PPARD->Oncogene{Bushman},chr6:35310335-35395968:+,peroxisome_proliferator_activated_receptor_delta	TE11_OESOPHAGUS	1	1	0.0728	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	16	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8219	133	0	0.12	0.0312	0.1663	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.12	0.1975	FALSE	218	210	16	281	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-TA--MT-TN	7	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0728	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TE11_OESOPHAGUS	1	1	0.0728	FALSE	369	2501	205	193	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MTATP8P1--MT-ND2	7	0	MTATP8P1	1063	chr1:568977:+	MT-ND2	4637	chrM:4899:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0728	0	MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TE11_OESOPHAGUS	1	1	0.0728	FALSE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	5	7	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	27797	2	0	0.86	0.052	0.0728	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.86	0.1248	FALSE	231	205	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	5	7	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	NO	29505	1188	0	0.01	0.052	0.0728	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.01	0.1248	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	6	3	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	22557	702	0	0.01	0.0624	0.0312	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.01	0.0936	FALSE	231	204	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	4	11	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	99	0	0.13	1	0.0416	0.1144	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.13	1	0.156	FALSE	344	826	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND6--MT-TE	3	15	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0.156	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE11_OESOPHAGUS	1	1	0.1872	FALSE	499	1288	110	792	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0624	0.0312	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE11_OESOPHAGUS	1	1	0.0936	FALSE	462	80	0	856	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	4	10	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	29876	0	0	1	0.0416	0.104	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	1	0.1456	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND6--MT-TE	3	14	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0.1456	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE11_OESOPHAGUS	1	1	0.1768	FALSE	499	1288	110	792	0	FALSE	ACH-000488
TE11_OESOPHAGUS	KRT5--NCL	6	1	KRT5	1764	chr12:52913708:-	NCL	21177	chr2:232320174:-	INCL_NON_REF_SPLICE	YES	10365	1366	0	0.01	0.0624	0.0104	GTEx&tcga_normals:6/3694=0.16%,KRT5->chr12:52908359-52914471:-,keratin_5,NCL->chr2:232318242-232348352:-,nucleolin	TE11_OESOPHAGUS	0	0.01	0.0728	FALSE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	5	5	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	31758	133	0	0.07	0.052	0.052	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.07	0.104	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	5	5	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	25855	12	0	0.45	0.052	0.052	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.45	0.104	FALSE	231	205	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	13	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	28829	0	0	1	0.0312	0.1352	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	1	0.1664	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	NRIP1--AF127936.7	6	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.58	1	0.0624	0.0104	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TE11_OESOPHAGUS	0.58	1	0.0728	FALSE	292	1546	117	613	0	FALSE	ACH-000488
TE11_OESOPHAGUS	B3GNTL1--OGFOD3	1	20	B3GNTL1	6043	chr17:80972330:-	OGFOD3	35210	chr17:80352419:-	ONLY_REF_SPLICE	YES	3	38	0.88	0.36	0.0104	0.2079	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-	TE11_OESOPHAGUS	0.36	0.88	0.2183	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	5	4	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	28856	1828	0	0	0.052	0.0416	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0	0.0936	FALSE	231	205	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	4	8	MT-ND4	1311	chrM:11070:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	28813	0	0	1	0.0416	0.0832	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	1	0.1248	FALSE	231	205	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	5	4	MT-ND4	1201	chrM:10960:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	21687	12	0	0.43	0.052	0.0416	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.43	0.0936	FALSE	230	193	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	6	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0624	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	1	1	0.0624	FALSE	344	821	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND6--MT-TE	4	8	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0.0832	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE11_OESOPHAGUS	1	1	0.1248	FALSE	499	1288	110	792	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-TA--MT-TN	6	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0624	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TE11_OESOPHAGUS	1	1	0.0624	FALSE	369	2501	205	193	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RP11-680G10.1--GSE1	5	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	23	1	0.28	0.052	0.0416	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TE11_OESOPHAGUS	0.28	1	0.0936	TRUE	465	1949	224	605	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	6	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0624	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE11_OESOPHAGUS	1	1	0.0624	FALSE	515	4851	409	746	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-CO1--KRT6A	5	3	MT-CO1	1591	chrM:6494:+	KRT6A	5561	chr12:52887023:-	INCL_NON_REF_SPLICE	YES	34180	0	0	1	0.052	0.0312	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	TE11_OESOPHAGUS	0	1	0.0832	FALSE	7	19	2	8	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	4	7	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	28468	2167	0	0.01	0.0416	0.0728	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.01	0.1144	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	5	3	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22275	133	0	0.06	0.052	0.0312	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.06	0.0832	FALSE	230	198	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	3	11	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	245	0	0.05	1	0.0312	0.1144	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	0.05	1	0.1456	FALSE	344	827	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MTR--CDC73	5	3	MTR	3733	chr1:236969533:+	CDC73	60011	chr1:193202123:+	ONLY_REF_SPLICE	YES	19	89	0.3	0.08	0.052	0.0312	MTR->5-methyltetrahydrofolate-homocysteine_methyltransferase,chr1:236958610-237067281:+,CDC73->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cell_division_cycle_73,chr1:193091147-193223031:+	TE11_OESOPHAGUS	0.08	0.3	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	B3GNTL1--OGFOD3	3	10	B3GNTL1	3835	chr17:80992911:-	OGFOD3	37219	chr17:80350410:-	ONLY_REF_SPLICE	YES	3	35	0.81	0.27	0.0312	0.104	B3GNTL1->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase-like_1,chr17:80900031-81009686:-,OGFOD3->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_3,chr17:80347099-80376513:-	TE11_OESOPHAGUS	0.27	0.81	0.1352	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	10	MT-ND4	1478	chrM:11237:+	MT-ATP8	5425	chrM:8412:+	INCL_NON_REF_SPLICE	YES	30098	0	0	1	0.0312	0.104	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	1	0.1352	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	10	MT-ND4	1508	chrM:11267:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	30625	0	0	1	0.0312	0.104	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	1	0.1352	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	C6orf136--ATAT1	5	1	C6orf136	1808	chr6:30615623:+	ATAT1	11873	chr6:30608154:+	ONLY_REF_SPLICE	YES	66	22	0.08	0.21	0.052	0.0104	LOCAL_REARRANGEMENT:+:[216],C6orf136->chr6:30614816-30620987:+,chromosome_6_open_reading_frame_136,ATAT1->alpha_tubulin_acetyltransferase_1,chr6:30594619-30614600:+	TE11_OESOPHAGUS	0.08	0.21	0.0624	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	KLF3--TBC1D1	5	1	KLF3	2362	chr4:38682303:+	TBC1D1	27595	chr4:38037209:+	ONLY_REF_SPLICE	YES	40	35	0.13	0.15	0.052	0.0104	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Amygdala=1},KLF3->Kruppel-like_factor_3_(basic),Oncogene{Bushman},chr4:38665817-38702663:+,TBC1D1->TBC1_domain_family_member_1,chr4:37892708-38140796:+	TE11_OESOPHAGUS	0.13	0.15	0.0624	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	9	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	30399	2	0	0.86	0.0312	0.0936	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.86	0.1248	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	4	5	MT-ND4	1572	chrM:11331:+	MT-ATP8	5534	chrM:8521:+	INCL_NON_REF_SPLICE	YES	30885	2175	0	0	0.0416	0.052	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0	0.0936	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	9	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	30044	1	0	0.92	0.0312	0.0936	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.92	0.1248	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	4	5	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0.052	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	1	1	0.0936	FALSE	344	821	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	SUN1--FAM133B	4	5	SUN1	23266	chr7:905704:+	FAM133B	48151	chr7:92199229:-	ONLY_REF_SPLICE	YES	326	99	0.03	0.08	0.0416	0.052	SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+,FAM133B->chr7:92190107-92219708:-,family_with_sequence_similarity_133_member_B	TE11_OESOPHAGUS	0.03	0.08	0.0936	TRUE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND1--MT-RNR2	4	4	MT-ND1	1717	chrM:4023:+	MT-RNR2	6113	chrM:2827:+	INCL_NON_REF_SPLICE	YES	1154	363	0.01	0.02	0.0416	0.0416	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE11_OESOPHAGUS	0.01	0.02	0.0832	FALSE	92	22	4	61	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	8	MT-ND4	1394	chrM:11153:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	30608	2	0	0.85	0.0312	0.0832	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.85	0.1144	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	4	4	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	21857	12	0	0.4	0.0416	0.0416	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.4	0.0832	FALSE	230	193	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	8	MT-ND4	1295	chrM:11054:+	MT-ATP8	5413	chrM:8400:+	INCL_NON_REF_SPLICE	YES	27336	0	0	1	0.0312	0.0832	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	1	0.1144	FALSE	231	205	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	5	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	1	1	0.052	FALSE	344	821	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE11_OESOPHAGUS	1	1	0.052	FALSE	462	80	0	856	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MTATP8P1--MT-ND2	5	0	MTATP8P1	1070	chr1:568984:+	MT-ND2	4956	chrM:5218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0	MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TE11_OESOPHAGUS	1	1	0.052	FALSE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND1--MT-RNR2	3	7	MT-ND1	1282	chrM:3588:+	MT-RNR2	4985	chrM:1699:+	INCL_NON_REF_SPLICE	YES	60	0	0.14	1	0.0312	0.0728	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE11_OESOPHAGUS	0.14	1	0.104	FALSE	114	26	4	85	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	7	MT-ND4	1645	chrM:11404:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	31095	133	0	0.07	0.0312	0.0728	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.07	0.104	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	4	3	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	22424	180	0	0.04	0.0416	0.0312	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.04	0.0728	FALSE	231	204	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RPS6KB1--VMP1	2	11	RPS6KB1	9809	chr17:58007793:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	50	186	0.21	0.07	0.0208	0.1144	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TE11_OESOPHAGUS	0.07	0.21	0.1352	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	KRT5--NCL	4	2	KRT5	1821	chr12:52913651:-	NCL	21123	chr2:232320228:-	INCL_NON_REF_SPLICE	NO	9892	1545	0	0	0.0416	0.0208	GTEx&tcga_normals:6/3694=0.16%,KRT5->chr12:52908359-52914471:-,keratin_5,NCL->chr2:232318242-232348352:-,nucleolin	TE11_OESOPHAGUS	0	0	0.0624	FALSE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	6	MT-ND4	1220	chrM:10979:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	22424	2	0	0.82	0.0312	0.0624	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.82	0.0936	FALSE	231	204	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	6	MT-ND4	1266	chrM:11025:+	MT-ATP8	5466	chrM:8453:+	INCL_NON_REF_SPLICE	YES	25381	0	0	1	0.0312	0.0624	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	1	0.0936	FALSE	231	205	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	6	MT-ND4	1192	chrM:10951:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	20234	1	0	0.9	0.0312	0.0624	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.9	0.0936	FALSE	230	193	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MTR--CDC73	4	2	MTR	1428	chr1:236959037:+	CDC73	60011	chr1:193202123:+	ONLY_REF_SPLICE	YES	14	89	0.3	0.06	0.0416	0.0208	MTR->5-methyltetrahydrofolate-homocysteine_methyltransferase,chr1:236958610-237067281:+,CDC73->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cell_division_cycle_73,chr1:193091147-193223031:+	TE11_OESOPHAGUS	0.06	0.3	0.0624	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	NRIP1--AF127936.7	4	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.3	1	0.0416	0.0208	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TE11_OESOPHAGUS	0.3	1	0.0624	FALSE	125	705	46	456	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RP11-114H23.1--RP11-114H23.2	4	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0.0208	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	TE11_OESOPHAGUS	1	1	0.0624	FALSE	81	155	12	160	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RP11-680G10.1--GSE1	3	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.64	0.0312	0.0624	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TE11_OESOPHAGUS	0.64	1	0.0936	TRUE	458	1351	185	561	0	FALSE	ACH-000488
TE11_OESOPHAGUS	C6orf136--ATAT1	4	1	C6orf136	1265	chr6:30615080:+	ATAT1	11873	chr6:30608154:+	ONLY_REF_SPLICE	YES	47	22	0.1	0.19	0.0416	0.0104	LOCAL_REARRANGEMENT:+:[216],C6orf136->chr6:30614816-30620987:+,chromosome_6_open_reading_frame_136,ATAT1->alpha_tubulin_acetyltransferase_1,chr6:30594619-30614600:+	TE11_OESOPHAGUS	0.1	0.19	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	4	1	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	23007	637	0	0.01	0.0416	0.0104	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.01	0.052	FALSE	231	204	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	5	MT-ND4	1515	chrM:11274:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	31627	322	0	0.02	0.0312	0.052	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.02	0.0832	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	5	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	32330	987	0	0.01	0.0312	0.052	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.01	0.0832	FALSE	231	217	16	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND6--MT-TE	3	5	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0.052	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE11_OESOPHAGUS	1	1	0.0832	FALSE	499	1288	110	792	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND3--MT-ATP8	4	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	1	1	0.0416	FALSE	351	233	23	137	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	4	0	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	1	1	0.0416	FALSE	230	193	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	1	1	0.0416	FALSE	344	821	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ND4L	4	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE11_OESOPHAGUS	1	1	0.0416	FALSE	344	821	44	306	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MTATP8P1--MT-ND2	4	0	MTATP8P1	1063	chr1:568977:+	MT-ND2	5033	chrM:5295:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	MTATP8P1->chr1:568915-569121:+,mitochondrially_encoded_ATP_synthase_8_pseudogene_1,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	TE11_OESOPHAGUS	1	1	0.0416	FALSE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TE11_OESOPHAGUS	1	1	0.0416	TRUE	0	0	0	434	0	FALSE	ACH-000488
TE11_OESOPHAGUS	SAMD5--SASH1	4	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	TE11_OESOPHAGUS	1	1	0.0416	TRUE	53	396	64	110	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND3--MT-ATP8	3	3	MT-ND3	1283	chrM:10341:+	MT-ATP8	4411	chrM:8430:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.75	0.0312	0.0312	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0.75	1	0.0624	FALSE	351	233	23	137	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	3	MT-ND4	1104	chrM:10863:+	MT-ATP8	5444	chrM:8431:+	INCL_NON_REF_SPLICE	NO	12231	2	0	0.75	0.0312	0.0312	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.75	0.0624	FALSE	230	193	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RPS6KB1--VMP1	1	11	RPS6KB1	10429	chr17:58008413:+	VMP1	35185	chr17:57886157:+	ONLY_REF_SPLICE	YES	53	186	0.18	0.06	0.0104	0.1144	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TE11_OESOPHAGUS	0.06	0.18	0.1248	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	GOLGA3--GALNT9	3	2	GOLGA3	17616	chr12:133362925:-	GALNT9	35366	chr12:132863016:-	ONLY_REF_SPLICE	YES	70	0	0.07	1	0.0312	0.0208	GOLGA3->chr12:133345495-133405444:-,golgin_A3,GALNT9->chr12:132680924-132905935:-,polypeptide_N-acetylgalactosaminyltransferase_9	TE11_OESOPHAGUS	0.07	1	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-CO1--KRT6A	3	2	MT-CO1	1597	chrM:6500:+	KRT6A	5569	chr12:52887015:-	INCL_NON_REF_SPLICE	YES	33658	0	0	1	0.0312	0.0208	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,KRT6A->chr12:52880958-52887041:-,keratin_6A	TE11_OESOPHAGUS	0	1	0.052	FALSE	7	19	2	8	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	2	MT-ND4	1164	chrM:10923:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18181	133	0	0.04	0.0312	0.0208	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	0	0.04	0.052	FALSE	230	193	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	WDR59--LDHD	3	2	WDR59	31017	chr16:74923601:-	LDHD	41927	chr16:75148132:-	ONLY_REF_SPLICE	YES	59	5	0.08	0.5	0.0312	0.0208	WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-,LDHD->chr16:75145758-75150669:-,lactate_dehydrogenase_D	TE11_OESOPHAGUS	0.08	0.5	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	FANCI--RNF135	2	5	FANCI	23336	chr15:89836095:+	RNF135	47704	chr17:29324260:+	ONLY_REF_SPLICE	YES	193	20	0.04	0.26	0.0208	0.052	FANCI->Fanconi_anemia_complementation_group_I,chr15:89787180-89860492:+,RNF135->chr17:29295803-29326929:+,ring_finger_protein_135	TE11_OESOPHAGUS	0.04	0.26	0.0728	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	FHOD3--MOCOS	2	5	FHOD3	5633	chr18:34092506:+	MOCOS	55855	chr18:33846712:+	ONLY_REF_SPLICE	YES	12	38	0.37	0.16	0.0208	0.052	LOCAL_REARRANGEMENT:+:[25557],FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,MOCOS->chr18:33767482-33852120:+,molybdenum_cofactor_sulfurase	TE11_OESOPHAGUS	0.16	0.37	0.0728	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	FHOD3--MOCOS	1	9	FHOD3	3459	chr18:33952707:+	MOCOS	42631	chr18:33778653:+	ONLY_REF_SPLICE	YES	27	40	0.27	0.2	0.0104	0.0936	LOCAL_REARRANGEMENT:+:[25557],FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,MOCOS->chr18:33767482-33852120:+,molybdenum_cofactor_sulfurase	TE11_OESOPHAGUS	0.2	0.27	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	KRT5--NCL	3	1	KRT5	1686	chr12:52913786:-	NCL	21177	chr2:232320174:-	INCL_NON_REF_SPLICE	YES	8470	1366	0	0	0.0312	0.0104	GTEx&tcga_normals:6/3694=0.16%,KRT5->chr12:52908359-52914471:-,keratin_5,NCL->chr2:232318242-232348352:-,nucleolin	TE11_OESOPHAGUS	0	0	0.0416	FALSE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RP11-123O10.4--GRIP1	1	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	NO	1	1	0.91	0.91	0.0104	0.0936	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TE11_OESOPHAGUS	0.91	0.91	0.104	FALSE	93	270	15	244	0	FALSE	ACH-000488
TE11_OESOPHAGUS	KRT5--HNRNPA2B1	3	0	KRT5	1686	chr12:52913786:-	HNRNPA2B1	16947	chr7:26233299:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	GTEx&tcga_normals:6/3694=0.16%,KRT5->chr12:52908359-52914471:-,keratin_5,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1	TE11_OESOPHAGUS	1	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	0	MT-ND4	1003	chrM:10762:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	1	1	0.0312	FALSE	230	189	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-ND4--MT-ATP8	3	0	MT-ND4	1062	chrM:10821:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE11_OESOPHAGUS	1	1	0.0312	FALSE	230	192	14	283	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	TE11_OESOPHAGUS	1	1	0.0312	FALSE	369	2501	205	193	0	FALSE	ACH-000488
TE11_OESOPHAGUS	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0312	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	TE11_OESOPHAGUS	1	1	0.0312	TRUE	0	0	0	434	0	FALSE	ACH-000488
TE11_OESOPHAGUS	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.23	1	0.0208	0.0416	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TE11_OESOPHAGUS	0.23	1	0.0624	FALSE	164	806	69	479	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RCC1--TBCA	3	0	RCC1	2175	chr1:28834672:+	TBCA	22542	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	TE11_OESOPHAGUS	1	1	0.0312	TRUE	0	3	0	7	0	TRUE	ACH-000488
TE11_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0.0312	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE11_OESOPHAGUS	1	1	0.052	FALSE	467	2173	244	435	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RPS6KB1--VMP1	1	7	RPS6KB1	11099	chr17:58009083:+	VMP1	36266	chr17:57889031:+	ONLY_REF_SPLICE	NO	38	141	0.17	0.05	0.0104	0.0728	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TE11_OESOPHAGUS	0.05	0.17	0.0832	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	MIR205HG--PANK2	2	1	MIR205HG	4006	chr1:209605170:+	PANK2	16617	chr20:3899318:+	ONLY_REF_SPLICE	YES	424	64	0.01	0.04	0.0208	0.0104	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,PANK2->chr20:3869486-3907605:+,pantothenate_kinase_2	TE11_OESOPHAGUS	0.01	0.04	0.0312	FALSE	0	15	0	5	1	FALSE	ACH-000488
TE11_OESOPHAGUS	RP11-1L12.3--SLC5A12	2	1	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	12	0	0.2	1	0.0208	0.0104	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	TE11_OESOPHAGUS	0.2	1	0.0312	TRUE	3	101	0	60	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RPS6KB1--VMP1	1	5	RPS6KB1	15604	chr17:58018304:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	NO	49	471	0.11	0.01	0.0104	0.052	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TE11_OESOPHAGUS	0.01	0.11	0.0624	FALSE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	BSG--PTBP1	2	0	BSG	2405	chr19:572701:+	PTBP1	16835	chr19:803561:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	0	0	2	0	TRUE	ACH-000488
TE11_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	1	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0104	0.0416	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	TE11_OESOPHAGUS	0.83	1	0.052	FALSE	33	240	4	98	0	FALSE	ACH-000488
TE11_OESOPHAGUS	HN1L--UBE2I	2	0	HN1L	1101	chr16:1728357:+	UBE2I	22624	chr16:1364021:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	0	0	2	0	TRUE	ACH-000488
TE11_OESOPHAGUS	HP1BP3--EIF4G3	2	0	HP1BP3	1129	chr1:21113688:-	EIF4G3	28440	chr1:21415706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	2	0	6	0	TRUE	ACH-000488
TE11_OESOPHAGUS	NDUFA4--PHF14	2	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	TE11_OESOPHAGUS	1	1	0.0208	TRUE	19	32	3	60	0	FALSE	ACH-000488
TE11_OESOPHAGUS	NEK6--GNAS	2	0	NEK6	1480	chr9:127020364:+	GNAS	38201	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	NEK6->NIMA_related_kinase_6,chr9:127019885-127115586:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	PAN2--TIMELESS	2	0	PAN2	6627	chr12:56719119:-	TIMELESS	27930	chr12:56816776:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	LOCAL_REARRANGEMENT:-:[83066],PAN2->PAN2_poly(A)_specific_ribonuclease_subunit,chr12:56710007-56727837:-,TIMELESS->chr12:56810903-56843187:-,timeless_circadian_clock	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	RP11-85K15.2--SRP54	2	0	RP11-85K15.2	1109	chr14:35451630:-	SRP54	16520	chr14:35465883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	NEIGHBORS_OVERLAP:-:+:[575],RP11-85K15.2->chr14:35390064-35451738:-,SRP54->chr14:35451163-35498773:+,signal_recognition_particle_54kDa	TE11_OESOPHAGUS	1	1	0.0208	FALSE	1	0	0	2	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RPSAP52--HMGA2	2	0	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	TE11_OESOPHAGUS	1	1	0.0208	FALSE	0	59	0	125	0	FALSE	ACH-000488
TE11_OESOPHAGUS	SETD8--CDK2AP1	2	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	0	0	18	0	TRUE	ACH-000488
TE11_OESOPHAGUS	TJP1--PPP1CB	2	0	TJP1	3834	chr15:30114205:-	PPP1CB	47331	chr2:29006773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	TJP1->chr15:29991571-30261068:-,tight_junction_protein_1,PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	VAPA--CCDC127	2	0	VAPA	1334	chr18:9914332:+	CCDC127	25486	chr5:206073:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,CCDC127->chr5:196986-218330:-,coiled-coil_domain_containing_127	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	VEZT--METAP2	2	0	VEZT	1141	chr12:95611662:+	METAP2	41371	chr12:95897841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	VEZT->chr12:95611522-95696566:+,vezatin,_adherens_junctions_transmembrane_protein,METAP2->Oncogene{Bushman},chr12:95867296-95909615:+,methionyl_aminopeptidase_2	TE11_OESOPHAGUS	1	1	0.0208	TRUE	0	0	0	2	0	TRUE	ACH-000488
TE11_OESOPHAGUS	YWHAE--CRK	2	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	TE11_OESOPHAGUS	1	1	0.0208	TRUE	6	50	7	115	0	FALSE	ACH-000488
TE11_OESOPHAGUS	MTR--CDC73	1	3	MTR	2643	chr1:236966942:+	CDC73	60011	chr1:193202123:+	ONLY_REF_SPLICE	YES	30	89	0.12	0.04	0.0104	0.0312	MTR->5-methyltetrahydrofolate-homocysteine_methyltransferase,chr1:236958610-237067281:+,CDC73->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cell_division_cycle_73,chr1:193091147-193223031:+	TE11_OESOPHAGUS	0.04	0.12	0.0416	TRUE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RPS6KB1--VMP1	1	3	RPS6KB1	7326	chr17:57992064:+	VMP1	37383	chr17:57895073:+	ONLY_REF_SPLICE	YES	86	136	0.04	0.03	0.0104	0.0312	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	TE11_OESOPHAGUS	0.03	0.04	0.0416	TRUE	0	0	0	2	0	FALSE	ACH-000488
TE11_OESOPHAGUS	NHSL1--MAP7	1	2	NHSL1	7828	chr6:138817356:-	MAP7	28659	chr6:136742937:-	ONLY_REF_SPLICE	NO	16	5	0.16	0.38	0.0104	0.0208	NHSL1->NHS_like_1,chr6:138743180-139013708:-,MAP7->chr6:136663875-136871957:-,microtubule_associated_protein_7	TE11_OESOPHAGUS	0.16	0.38	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	SMYD3--TFB2M	1	2	SMYD3	8315	chr1:246490503:-	TFB2M	38966	chr1:246711909:-	ONLY_REF_SPLICE	YES	22	63	0.12	0.05	0.0104	0.0208	LOCAL_REARRANGEMENT:-:[33248],SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,TFB2M->chr1:246703862-246729626:-,transcription_factor_B2,_mitochondrial	TE11_OESOPHAGUS	0.05	0.12	0.0312	TRUE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	ARPC3--CDC42	1	1	ARPC3	7128	chr12:110874470:-	CDC42	14902	chr1:22404922:+	ONLY_REF_SPLICE	YES	1156	45	0	0.04	0.0104	0.0104	ARPC3->actin_related_protein_2/3_complex_subunit_3,chr12:110872630-110888227:-,CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+	TE11_OESOPHAGUS	0	0.04	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	CLEC16A--CDH1	1	1	CLEC16A	2439	chr16:11051767:+	CDH1	48198	chr16:68835573:+	ONLY_REF_SPLICE	YES	19	308	0.1	0.01	0.0104	0.0104	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,CDH1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},cadherin_1,chr16:68771128-68869451:+	TE11_OESOPHAGUS	0.01	0.1	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	DIAPH3--TDRD3	1	1	DIAPH3	11595	chr13:60566607:-	TDRD3	40703	chr13:61018817:+	ONLY_REF_SPLICE	NO	50	12	0.04	0.14	0.0104	0.0104	DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3	TE11_OESOPHAGUS	0.04	0.14	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	DIAPH3--TDRD3	1	1	DIAPH3	12910	chr13:60565292:-	TDRD3	39618	chr13:61013822:+	ONLY_REF_SPLICE	NO	53	2	0.04	0.5	0.0104	0.0104	DIAPH3->chr13:60239717-60738121:-,diaphanous_related_formin_3,TDRD3->chr13:60970591-61148012:+,tudor_domain_containing_3	TE11_OESOPHAGUS	0.04	0.5	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	HIF1A-AS2--HIF1A	1	1	HIF1A-AS2	1213	chr14:62217603:-	HIF1A	11316	chr14:62188227:+	ONLY_REF_SPLICE	YES	1	296	0.67	0.01	0.0104	0.0104	NEIGHBORS_OVERLAP:-:+:[32700],HIF1A-AS2->HIF1A_antisense_RNA_2,chr14:62182276-62217815:-,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	TE11_OESOPHAGUS	0.01	0.67	0.0208	FALSE	0	1	0	3	0	FALSE	ACH-000488
TE11_OESOPHAGUS	HSP90AA1--DYNC1H1	1	1	HSP90AA1	7819	chr14:102549371:-	DYNC1H1	29012	chr14:102467291:+	ONLY_REF_SPLICE	NO	5263	200	0	0.01	0.0104	0.0104	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,{Klijn_CCL:Lung=1,Breast=1},LOCAL_INVERSION:-:+:[29946],HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1,DYNC1H1->chr14:102430865-102517129:+,dynein_cytoplasmic_1_heavy_chain_1	TE11_OESOPHAGUS	0	0.01	0.0208	FALSE	0	0	0	2	0	FALSE	ACH-000488
TE11_OESOPHAGUS	KIAA1671--AP000350.10	1	1	KIAA1671	11917	chr22:25445331:+	AP000350.10	37250	chr22:24236959:+	ONLY_REF_SPLICE	YES	64	0	0.03	1	0.0104	0.0104	KIAA1671->KIAA1671,chr22:25348697-25593415:+,AP000350.10->chr22:24204375-24237410:+	TE11_OESOPHAGUS	0.03	1	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	LDLRAD3--CD44	1	1	LDLRAD3	1164	chr11:35965694:+	CD44	19081	chr11:35198122:+	ONLY_REF_SPLICE	NO	2	809	0.5	0	0.0104	0.0104	{Klijn_CCL:Skin=1},LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	TE11_OESOPHAGUS	0	0.5	0.0208	FALSE	0	1	0	2	1	FALSE	ACH-000488
TE11_OESOPHAGUS	MARCH6--CCT5	1	1	MARCH6	10353	chr5:10394897:+	CCT5	41550	chr5:10254257:+	ONLY_REF_SPLICE	YES	263	1685	0.01	0	0.0104	0.0104	GTEx_v2:{count=1;pct=0.01%;dist=Kidney_-_Cortex=1},LOCAL_REARRANGEMENT:+:[87291],MARCH6->chr5:10353815-10440500:+,membrane_associated_ring-CH-type_finger_6,CCT5->chaperonin_containing_TCP1_subunit_5,chr5:10250033-10266524:+	TE11_OESOPHAGUS	0	0.01	0.0208	FALSE	0	0	0	3	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RB1--ITM2B	1	1	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	44	678	0.04	0	0.0104	0.0104	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	TE11_OESOPHAGUS	0	0.04	0.0208	FALSE	53	73	8	19	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RBM27--ANKHD1	1	1	RBM27	8920	chr5:145616995:+	ANKHD1	36167	chr5:139825327:+	ONLY_REF_SPLICE	NO	57	99	0.03	0.02	0.0104	0.0104	RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+,ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+	TE11_OESOPHAGUS	0.02	0.03	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000488
TE11_OESOPHAGUS	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	34	1	0.06	0.0104	0.0104	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TE11_OESOPHAGUS	0.06	1	0.0208	TRUE	64	13	3	59	0	FALSE	ACH-000488
TE11_OESOPHAGUS	SPEN--DNAJC16	1	1	SPEN	5344	chr1:16203173:+	DNAJC16	31400	chr1:15860732:+	ONLY_REF_SPLICE	NO	41	10	0.05	0.17	0.0104	0.0104	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,DNAJC16->DnaJ_heat_shock_protein_family_(Hsp40)_member_C16,chr1:15853308-15918874:+	TE11_OESOPHAGUS	0.05	0.17	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000488
TE11_OESOPHAGUS	TTC9C--RAD21	1	1	TTC9C	4283	chr11:62503036:+	RAD21	17742	chr8:117869010:-	ONLY_REF_SPLICE	YES	108	833	0.02	0	0.0104	0.0104	TTC9C->chr11:62495541-62507765:+,tetratricopeptide_repeat_domain_9C,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-	TE11_OESOPHAGUS	0	0.02	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000488
A375_SKIN	AC104389.28--HBE1	85	147	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	157	4	0.6	0.98	1.1076	1.9156	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	A375_SKIN	0.6	0.98	3.0232	TRUE	0	48	0	65	48	FALSE	ACH-000219
A375_SKIN	AC104389.28--HBE1	60	162	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	157	0	0.59	1	0.7819	2.111	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	A375_SKIN	0.59	1	2.8929	TRUE	0	35	0	55	35	FALSE	ACH-000219
A375_SKIN	TIMM23B--LINC00843	65	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.847	0.43	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	A375_SKIN	0.99	1	1.277	TRUE	508	994	45	981	0	FALSE	ACH-000219
A375_SKIN	AP003900.6--AC011718.2	68	15	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	8	0	0.91	1	0.8861	0.1955	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A375_SKIN	0.91	1	1.0816	TRUE	0	3	0	38	3	FALSE	ACH-000219
A375_SKIN	CECR7--AC008132.1	65	20	CECR7	1775	chr22:17518234:+	AC008132.1	13601	chr22:18723545:+	ONLY_REF_SPLICE	YES	6	0	0.93	1	0.847	0.2606	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	A375_SKIN	0.93	1	1.1076	TRUE	0	0	0	5	0	TRUE	ACH-000219
A375_SKIN	ST3GAL2--COG4	45	0	ST3GAL2	1289	chr16:70472852:-	COG4	19031	chr16:70553634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5864	0	LOCAL_REARRANGEMENT:-:[41331],ST3GAL2->ST3_beta-galactoside_alpha-2,3-sialyltransferase_2,chr16:70413338-70473140:-,COG4->chr16:70514471-70557468:-,component_of_oligomeric_golgi_complex_4	A375_SKIN	1	1	0.5864	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	L3MBTL2--EP300	31	20	L3MBTL2	5553	chr22:41610030:+	EP300	49101	chr22:41564725:+	ONLY_REF_SPLICE	YES	102	88	0.33	0.37	0.404	0.2606	LOCAL_REARRANGEMENT:+:[25128],L3MBTL2->L3MBTL2_polycomb_repressive_complex_1_subunit,chr22:41601209-41627275:+,EP300->ArcherDX_panel,E1A_binding_protein_p300,FoundationOne_panel,Oncogene{Bushman},chr22:41487790-41576081:+	A375_SKIN	0.33	0.37	0.6646	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	TIMM23--RP11-464F9.1	34	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	428	4	0.09	0.91	0.4431	0.0782	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	A375_SKIN	0.09	0.91	0.5213	TRUE	519	3926	326	965	0	FALSE	ACH-000219
A375_SKIN	LINC00511--SLC39A11	26	34	LINC00511	8867	chr17:70588342:-	SLC39A11	52513	chr17:70645407:-	ONLY_REF_SPLICE	YES	121	11	0.33	0.85	0.3388	0.4431	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	A375_SKIN	0.33	0.85	0.7819	TRUE	0	1	0	5	1	TRUE	ACH-000219
A375_SKIN	RP11-444D3.1--SOX5	27	28	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	123	1	0.31	0.3518	0.3649	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	A375_SKIN	0.31	1	0.7167	TRUE	477	1352	189	275	0	FALSE	ACH-000219
A375_SKIN	ELOVL5--KLHL31	23	29	ELOVL5	1333	chr6:53213615:-	KLHL31	22692	chr6:53517128:-	ONLY_REF_SPLICE	YES	294	0	0.15	1	0.2997	0.3779	ELOVL5->ELOVL_fatty_acid_elongase_5,Oncogene{Bushman},chr6:53132196-53213947:-,KLHL31->chr6:53512699-53530506:-,kelch_like_family_member_31	A375_SKIN	0.15	1	0.6776	TRUE	0	0	0	2	0	TRUE	ACH-000219
A375_SKIN	KANSL1--ARL17B	25	21	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	50	72	0.48	0.39	0.3258	0.2737	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	A375_SKIN	0.39	0.48	0.5995	TRUE	181	1564	124	196	0	FALSE	ACH-000219
A375_SKIN	C15orf57--CBX3	16	29	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	82	55	0.35	0.45	0.2085	0.3779	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A375_SKIN	0.35	0.45	0.5864	TRUE	267	562	48	632	0	FALSE	ACH-000219
A375_SKIN	CECR7--AC008132.1	14	13	CECR7	1775	chr22:17518234:+	AC008132.1	15153	chr22:18727043:+	ONLY_REF_SPLICE	YES	6	2	0.82	0.93	0.1824	0.1694	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	A375_SKIN	0.82	0.93	0.3518	TRUE	0	0	0	5	0	TRUE	ACH-000219
A375_SKIN	AP003900.6--AC011718.2	14	8	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	8	2	0.73	0.92	0.1824	0.1042	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A375_SKIN	0.73	0.92	0.2866	TRUE	0	1	0	26	1	FALSE	ACH-000219
A375_SKIN	AP003900.6--AC011718.2	15	3	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	8	13	0.69	0.58	0.1955	0.0391	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A375_SKIN	0.58	0.69	0.2346	TRUE	0	1	0	21	1	FALSE	ACH-000219
A375_SKIN	MT-ND4--MT-ND4L	3	51	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	17	0	0.76	1	0.0391	0.6646	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A375_SKIN	0.76	1	0.7037	FALSE	344	826	44	306	0	FALSE	ACH-000219
A375_SKIN	DYNC1LI2--BLMH	11	17	DYNC1LI2	2643	chr16:66783100:-	BLMH	34213	chr17:28576186:-	ONLY_REF_SPLICE	YES	375	347	0.07	0.07	0.1433	0.2215	DYNC1LI2->chr16:66754796-66785701:-,dynein_cytoplasmic_1_light_intermediate_chain_2,BLMH->bleomycin_hydrolase,chr17:28575218-28619074:-	A375_SKIN	0.07	0.07	0.3648	TRUE	0	0	0	1	0	FALSE	ACH-000219
A375_SKIN	OSBPL9--RP11-191G24.1	14	5	OSBPL9	8120	chr1:52179751:+	RP11-191G24.1	39734	chr1:52026554:+	ONLY_REF_SPLICE	YES	120	0	0.14	1	0.1824	0.0652	LOCAL_REARRANGEMENT:+:[15550],OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,RP11-191G24.1->chr1:51983981-52027301:+	A375_SKIN	0.14	1	0.2476	TRUE	0	0	0	2	0	TRUE	ACH-000219
A375_SKIN	AP003900.6--AC011718.2	7	30	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	17	0	0.69	1	0.0912	0.3909	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A375_SKIN	0.69	1	0.4821	TRUE	0	5	0	45	5	FALSE	ACH-000219
A375_SKIN	CECR7--AC008132.1	12	8	CECR7	1775	chr22:17518234:+	AC008132.1	16240	chr22:18732023:+	ONLY_REF_SPLICE	YES	6	16	0.77	0.56	0.1564	0.1042	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	A375_SKIN	0.56	0.77	0.2606	TRUE	0	0	0	5	0	TRUE	ACH-000219
A375_SKIN	MT-ND4--MT-ND4L	3	44	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	13	0	0.78	1	0.0391	0.5734	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A375_SKIN	0.78	1	0.6125	FALSE	344	826	44	306	0	FALSE	ACH-000219
A375_SKIN	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1694	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	A375_SKIN	1	1	0.1694	TRUE	0	0	0	434	0	FALSE	ACH-000219
A375_SKIN	MT-ND4--MT-ND4L	4	35	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	8	0	0.83	1	0.0521	0.4561	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	A375_SKIN	0.83	1	0.5082	FALSE	344	821	44	306	0	FALSE	ACH-000219
A375_SKIN	DPYD--MIR137HG	11	6	DPYD	1166	chr1:98386440:-	MIR137HG	40342	chr1:98460556:-	ONLY_REF_SPLICE	YES	61	1	0.22	0.94	0.1433	0.0782	LOCAL_REARRANGEMENT:-:[66951],DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,MIR137HG->MIR137_host_gene,chr1:98453556-98515419:-	A375_SKIN	0.22	0.94	0.2215	TRUE	0	0	0	2	0	TRUE	ACH-000219
A375_SKIN	RP11-344E13.3--UBBP4	6	26	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	358	0	0.08	1	0.0782	0.3388	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	A375_SKIN	0.08	1	0.417	TRUE	23	13	0	54	0	FALSE	ACH-000219
A375_SKIN	MT-ND4--MT-ATP8	12	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	10453	4	0	0.76	0.1564	0.013	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A375_SKIN	0	0.76	0.1694	FALSE	230	193	14	283	0	FALSE	ACH-000219
A375_SKIN	RP11-141M1.3--STARD13	7	20	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	88	0.9	0.23	0.0912	0.2606	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	A375_SKIN	0.23	0.9	0.3518	FALSE	141	264	50	91	0	FALSE	ACH-000219
A375_SKIN	RP11-141M1.3--STARD13	6	24	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	4	88	0.88	0.25	0.0782	0.3127	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	A375_SKIN	0.25	0.88	0.3909	FALSE	49	120	16	70	0	FALSE	ACH-000219
A375_SKIN	ZNF654--HMGB2	12	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1564	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	A375_SKIN	1	1	0.1564	TRUE	0	0	0	518	0	FALSE	ACH-000219
A375_SKIN	C15orf57--CBX3	5	23	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	81	55	0.26	0.34	0.0652	0.2997	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	A375_SKIN	0.26	0.34	0.3649	TRUE	267	562	48	632	0	FALSE	ACH-000219
A375_SKIN	RP11-444D3.1--SOX5	3	31	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	141	1	0.19	0.0391	0.404	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	A375_SKIN	0.19	1	0.4431	TRUE	160	277	29	98	0	FALSE	ACH-000219
A375_SKIN	ELOVL5--KLHL31	3	29	ELOVL5	1800	chr6:53213148:-	KLHL31	22692	chr6:53517128:-	ONLY_REF_SPLICE	YES	365	0	0.08	1	0.0391	0.3779	ELOVL5->ELOVL_fatty_acid_elongase_5,Oncogene{Bushman},chr6:53132196-53213947:-,KLHL31->chr6:53512699-53530506:-,kelch_like_family_member_31	A375_SKIN	0.08	1	0.417	TRUE	0	0	0	2	0	TRUE	ACH-000219
A375_SKIN	AP000525.9--LA16c-60G3.6	9	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	13	0	0.43	1	0.1173	0.013	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	A375_SKIN	0.43	1	0.1303	TRUE	0	42	0	133	42	FALSE	ACH-000219
A375_SKIN	MT-ND5--MT-ND6	7	5	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	2207	1	0.01	0.0912	0.0652	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	A375_SKIN	0.01	1	0.1564	FALSE	26	124	4	93	0	FALSE	ACH-000219
A375_SKIN	RP11-444D3.1--SOX5	2	23	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	123	1	0.17	0.0261	0.2997	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	A375_SKIN	0.17	1	0.3258	TRUE	274	363	69	150	0	FALSE	ACH-000219
A375_SKIN	RP11-444D3.1--SOX5	1	26	RP11-444D3.1	8531	chr12:24430150:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	141	1	0.16	0.013	0.3388	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	A375_SKIN	0.16	1	0.3518	TRUE	13	17	1	13	0	FALSE	ACH-000219
A375_SKIN	AP003900.6--AC011718.2	2	17	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	17	2	0.53	0.9	0.0261	0.2215	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A375_SKIN	0.53	0.9	0.2476	TRUE	0	1	0	20	1	FALSE	ACH-000219
A375_SKIN	DPYD--MIR137HG	5	4	DPYD	1166	chr1:98386440:-	MIR137HG	41427	chr1:98455125:-	ONLY_REF_SPLICE	YES	61	1	0.13	0.9	0.0652	0.0521	LOCAL_REARRANGEMENT:-:[66951],DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,MIR137HG->MIR137_host_gene,chr1:98453556-98515419:-	A375_SKIN	0.13	0.9	0.1173	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	MT-ND4--MT-ATP8	5	4	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	12194	206	0	0.04	0.0652	0.0521	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A375_SKIN	0	0.04	0.1173	FALSE	231	217	16	283	0	FALSE	ACH-000219
A375_SKIN	ST3GAL2--COG4	6	0	ST3GAL2	1289	chr16:70472852:-	COG4	20114	chr16:70551643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0782	0	LOCAL_REARRANGEMENT:-:[41331],ST3GAL2->ST3_beta-galactoside_alpha-2,3-sialyltransferase_2,chr16:70413338-70473140:-,COG4->chr16:70514471-70557468:-,component_of_oligomeric_golgi_complex_4	A375_SKIN	1	1	0.0782	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	MT-ND4--MT-ATP8	5	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13591	66	0	0.11	0.0652	0.0391	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A375_SKIN	0	0.11	0.1043	FALSE	231	217	16	283	0	FALSE	ACH-000219
A375_SKIN	LINC00511--SLC39A11	1	18	LINC00511	8867	chr17:70588342:-	SLC39A11	52820	chr17:70645100:-	ONLY_REF_SPLICE	YES	121	20	0.14	0.49	0.013	0.2346	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	A375_SKIN	0.14	0.49	0.2476	TRUE	0	1	0	5	1	TRUE	ACH-000219
A375_SKIN	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0652	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	A375_SKIN	1	1	0.0652	TRUE	0	0	0	434	0	FALSE	ACH-000219
A375_SKIN	CDH13--RP11-22H5.2	4	1	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	234	0	0.02	1	0.0521	0.013	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	A375_SKIN	0.02	1	0.0651	FALSE	14	31	0	36	0	FALSE	ACH-000219
A375_SKIN	RP11-444D3.1--SOX5	3	5	RP11-444D3.1	1258	chr12:24715267:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	21	123	0.28	0.06	0.0391	0.0652	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	A375_SKIN	0.06	0.28	0.1043	TRUE	0	1	1	7	0	FALSE	ACH-000219
A375_SKIN	RP11-444D3.1--SOX5	1	13	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	10	123	0.58	0.1	0.013	0.1694	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	A375_SKIN	0.1	0.58	0.1824	TRUE	16	11	2	20	0	FALSE	ACH-000219
A375_SKIN	LINC01036--LINC01037	4	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0521	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	A375_SKIN	1	1	0.0521	FALSE	0	24	0	62	0	FALSE	ACH-000219
A375_SKIN	LUC7L3--ABCC3	3	4	LUC7L3	13606	chr17:48825777:+	ABCC3	44916	chr17:48755105:+	ONLY_REF_SPLICE	YES	794	16	0.01	0.3	0.0391	0.0521	LOCAL_REARRANGEMENT:+:[27292],LUC7L3->LUC7_like_3_pre-mRNA_splicing_factor,chr17:48796905-48833574:+,ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+	A375_SKIN	0.01	0.3	0.0912	FALSE	0	0	0	1	0	FALSE	ACH-000219
A375_SKIN	MT-ND4--MT-ATP8	3	4	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12194	66	0	0.1	0.0391	0.0521	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A375_SKIN	0	0.1	0.0912	FALSE	231	217	16	283	0	FALSE	ACH-000219
A375_SKIN	MT-ND4--MT-ATP8	3	3	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15883	66	0	0.08	0.0391	0.0391	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A375_SKIN	0	0.08	0.0782	FALSE	231	217	16	283	0	FALSE	ACH-000219
A375_SKIN	MT-ND4--MT-ATP8	3	3	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	13811	0	0	1	0.0391	0.0391	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A375_SKIN	0	1	0.0782	FALSE	231	217	16	283	0	FALSE	ACH-000219
A375_SKIN	PNPLA2--TALDO1	3	3	PNPLA2	2004	chr11:819905:+	TALDO1	13268	chr11:755879:+	ONLY_REF_SPLICE	YES	135	675	0.04	0.01	0.0391	0.0391	LOCAL_REARRANGEMENT:+:[53878],PNPLA2->chr11:818902-825573:+,patatin_like_phospholipase_domain_containing_2,TALDO1->chr11:747329-765024:+,transaldolase_1	A375_SKIN	0.01	0.04	0.0782	FALSE	0	0	0	1	0	FALSE	ACH-000219
A375_SKIN	DPP9--AC005523.3	3	2	DPP9	9373	chr19:4714093:-	AC005523.3	33107	chr19:4785539:-	ONLY_REF_SPLICE	YES	223	0	0.02	1	0.0391	0.0261	LOCAL_REARRANGEMENT:-:[60447],DPP9->chr19:4675236-4724685:-,dipeptidyl_peptidase_9,AC005523.3->chr19:4785132-4791219:-	A375_SKIN	0.02	1	0.0652	TRUE	0	0	0	1	0	FALSE	ACH-000219
A375_SKIN	HIF1A--PRKCH	2	6	HIF1A	10588	chr14:62201003:+	PRKCH	26044	chr14:61766429:+	ONLY_REF_SPLICE	YES	500	0	0.02	1	0.0261	0.0782	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	A375_SKIN	0.02	1	0.1043	TRUE	0	0	0	1	0	FALSE	ACH-000219
A375_SKIN	MT-ND4--MT-ATP8	3	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	13591	1883	0	0	0.0391	0.0261	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A375_SKIN	0	0	0.0652	FALSE	231	217	16	283	0	FALSE	ACH-000219
A375_SKIN	MT-ND4--MT-ATP8	3	1	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	12468	1055	0	0	0.0391	0.013	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	A375_SKIN	0	0	0.0521	FALSE	231	205	14	283	0	FALSE	ACH-000219
A375_SKIN	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0391	0.013	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A375_SKIN	0.8	1	0.0521	TRUE	458	1351	185	561	0	FALSE	ACH-000219
A375_SKIN	AC104389.28--HBE1	3	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0391	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	A375_SKIN	1	1	0.0391	TRUE	0	16	0	53	13	FALSE	ACH-000219
A375_SKIN	KANSL1--ARL17B	3	0	KANSL1	9741	chr17:44171926:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0391	0	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	A375_SKIN	1	1	0.0391	TRUE	51	25	1	17	0	FALSE	ACH-000219
A375_SKIN	RCC1--EIF4A1	3	0	RCC1	2175	chr1:28834672:+	EIF4A1	21291	chr17:7478437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0391	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	A375_SKIN	1	1	0.0391	TRUE	0	0	0	2	0	TRUE	ACH-000219
A375_SKIN	RP11-141M1.3--STARD13	1	8	RP11-141M1.3	8903	chr13:34013828:-	STARD13	26750	chr13:33716510:-	ONLY_REF_SPLICE	YES	3	83	0.75	0.1	0.013	0.1042	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	A375_SKIN	0.1	0.75	0.1172	FALSE	1	5	1	7	0	FALSE	ACH-000219
A375_SKIN	SLC25A44--LMNA	3	0	SLC25A44	1159	chr1:156164038:+	LMNA	29378	chr1:156105692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0391	0	LOCAL_REARRANGEMENT:+:[54000],SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,LMNA->chr1:156052364-156109880:+,lamin_A/C	A375_SKIN	1	1	0.0391	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	AP003900.6--AC011718.2	2	2	AP003900.6	1122	chr21:11169841:+	AC011718.2	15569	chr22:20643258:-	ONLY_REF_SPLICE	YES	8	2	0.33	0.67	0.0261	0.0261	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	A375_SKIN	0.33	0.67	0.0522	TRUE	0	0	0	2	0	TRUE	ACH-000219
A375_SKIN	PSMB4--PSMD4	2	2	PSMB4	1654	chr1:151372663:+	PSMD4	8677	chr1:151234637:+	ONLY_REF_SPLICE	YES	4777	10	0	0.29	0.0261	0.0261	HGNC_GENEFAM,PSMB4->chr1:151372010-151374420:+,proteasome_subunit_beta_4,PSMD4->chr1:151227179-151239955:+,proteasome_26S_subunit,_non-ATPase_4	A375_SKIN	0	0.29	0.0522	FALSE	0	0	0	1	0	FALSE	ACH-000219
A375_SKIN	HIF1A--PRKCH	1	5	HIF1A	10588	chr14:62201003:+	PRKCH	36008	chr14:61857943:+	ONLY_REF_SPLICE	YES	500	13	0.01	0.32	0.013	0.0652	YOSHIHARA_TCGA_num_samples[LUAD:1|OV:1],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,PRKCH->chr14:61654277-62017694:+,protein_kinase_C_eta	A375_SKIN	0.01	0.32	0.0782	FALSE	0	0	0	1	0	FALSE	ACH-000219
A375_SKIN	AC104389.28--HBE1	2	0	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	A375_SKIN	1	1	0.0261	TRUE	0	11	0	26	8	FALSE	ACH-000219
A375_SKIN	C17orf76-AS1--AP2B1	2	0	C17orf76-AS1	1593	chr17:16342728:+	AP2B1	30869	chr17:33977549:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	C17orf76-AS1->chr17:16342136-16381992:+,AP2B1->adaptor_related_protein_complex_2_beta_1_subunit,chr17:33905065-34053436:+	A375_SKIN	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	DENND4A--PTPLAD1	2	0	DENND4A	1284	chr15:66084348:-	PTPLAD1	45382	chr15:65844014:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[79697],DENND4A->DENN_domain_containing_4A,chr15:65950384-66084631:-,PTPLAD1->chr15:65822756-65870687:+	A375_SKIN	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	ELMO1--AOAH	2	0	ELMO1	22806	chr7:37250991:-	AOAH	46527	chr7:36726399:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1,AOAH->acyloxyacyl_hydrolase,chr7:36552456-36764154:-	A375_SKIN	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	MINOS1--CAPZB	2	0	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	A375_SKIN	1	1	0.0261	TRUE	2	7	0	21	0	FALSE	ACH-000219
A375_SKIN	POLE4--RP11-355F16.1	2	0	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	A375_SKIN	1	1	0.0261	TRUE	5	7	0	37	0	FALSE	ACH-000219
A375_SKIN	RP11-634B7.4--TRIM58	1	4	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	15	1	0.25	0.013	0.0521	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	A375_SKIN	0.25	1	0.0651	TRUE	158	633	76	73	0	FALSE	ACH-000219
A375_SKIN	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A375_SKIN	1	1	0.0261	TRUE	465	1949	224	605	0	FALSE	ACH-000219
A375_SKIN	SS18L1--DNAJC5	2	0	SS18L1	1124	chr20:60718945:+	DNAJC5	20214	chr20:62559688:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,DNAJC5->DnaJ_heat_shock_protein_family_(Hsp40)_member_C5,chr20:62526518-62567384:+	A375_SKIN	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	SS18L1--TAF4	2	0	SS18L1	1124	chr20:60718945:+	TAF4	21561	chr20:60589763:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	GTEx_FI:{Skin=[count:2=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Pancreas=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[77956],SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-	A375_SKIN	1	1	0.0261	TRUE	2	5	0	8	0	FALSE	ACH-000219
A375_SKIN	CDH13--RP11-22H5.2	1	2	CDH13	3588	chr16:82673070:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	NO	273	0	0.01	1	0.013	0.0261	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	A375_SKIN	0.01	1	0.0391	FALSE	0	2	0	10	0	FALSE	ACH-000219
A375_SKIN	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	21326	chr12:23908658:-	ONLY_REF_SPLICE	YES	0	365	1	0.01	0.013	0.0261	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	A375_SKIN	0.01	1	0.0391	FALSE	0	1	0	5	0	FALSE	ACH-000219
A375_SKIN	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	4311	193	0	0.02	0.013	0.0261	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	A375_SKIN	0	0.02	0.0391	FALSE	6	50	7	115	0	FALSE	ACH-000219
A375_SKIN	YWHAE--CRK	1	2	YWHAE	7944	chr17:1257505:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	2271	193	0	0.02	0.013	0.0261	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	A375_SKIN	0	0.02	0.0391	FALSE	0	0	0	4	0	FALSE	ACH-000219
A375_SKIN	ANKHD1--SKP1	1	1	ANKHD1	1460	chr5:139781858:+	SKP1	47172	chr5:133509713:-	ONLY_REF_SPLICE	YES	71	507	0.03	0	0.013	0.013	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-	A375_SKIN	0	0.03	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000219
A375_SKIN	ATP6V1C1--AZIN1	1	1	ATP6V1C1	1163	chr8:104033453:+	AZIN1	29641	chr8:103855975:-	ONLY_REF_SPLICE	NO	298	447	0.01	0	0.013	0.013	GTEx&tcga_normals:1/3694=0.03%,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+,AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-	A375_SKIN	0	0.01	0.026	FALSE	0	0	0	2	0	FALSE	ACH-000219
A375_SKIN	CCDC34--KIF18A	1	1	CCDC34	4280	chr11:27371879:-	KIF18A	26502	chr11:28084063:-	ONLY_REF_SPLICE	YES	159	88	0.01	0.02	0.013	0.013	CCDC34->chr11:27352374-27385415:-,coiled-coil_domain_containing_34,KIF18A->chr11:28042167-28129855:-,kinesin_family_member_18A	A375_SKIN	0.01	0.02	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000219
A375_SKIN	CNOT2--CPSF6	1	1	CNOT2	11745	chr12:70704797:+	CPSF6	36420	chr12:69644909:+	ONLY_REF_SPLICE	YES	226	295	0.01	0.01	0.013	0.013	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6	A375_SKIN	0.01	0.01	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000219
A375_SKIN	CSAG1--CT45A3	1	1	CSAG1	2291	chrX:151904518:+	CT45A3	8279	chrX:134887227:+	ONLY_REF_SPLICE	YES	185	46	0.01	0.04	0.013	0.013	CSAG1->chondrosarcoma_associated_gene_1,chrX:151903228-151909518:+,CT45A3->cancer/testis_antigen_family_45,_member_A3,chrX:134883488-134891885:+	A375_SKIN	0.01	0.04	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000219
A375_SKIN	CSNK1A1--G3BP1	1	1	CSNK1A1	2370	chr5:148929638:-	G3BP1	27334	chr5:151166133:+	ONLY_REF_SPLICE	NO	885	90	0	0.02	0.013	0.013	CSNK1A1->Oncogene{Bushman},casein_kinase_1_alpha_1,chr5:148871760-148931007:-,G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+	A375_SKIN	0	0.02	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000219
A375_SKIN	DANCR--NVL	1	1	DANCR	1530	chr4:53579126:+	NVL	29469	chr1:224455835:-	ONLY_REF_SPLICE	NO	912	84	0	0.02	0.013	0.013	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,NVL->chr1:224415036-224518089:-,nuclear_VCP-like	A375_SKIN	0	0.02	0.026	FALSE	0	0	0	3	0	FALSE	ACH-000219
A375_SKIN	ETF1--CTNNA1	1	1	ETF1	1468	chr5:137878522:-	CTNNA1	29160	chr5:138145727:+	ONLY_REF_SPLICE	YES	987	1286	0	0	0.013	0.013	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},LOCAL_INVERSION:-:+:[67667],ETF1->chr5:137841784-137878989:-,eukaryotic_translation_termination_factor_1,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	A375_SKIN	0	0	0.026	FALSE	0	0	0	2	0	FALSE	ACH-000219
A375_SKIN	NAP1L1--OSBPL8	1	1	NAP1L1	1467	chr12:76478347:-	OSBPL8	28640	chr12:76881398:-	ONLY_REF_SPLICE	YES	374	37	0.01	0.05	0.013	0.013	NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1,OSBPL8->chr12:76745577-76953589:-,oxysterol_binding_protein_like_8	A375_SKIN	0.01	0.05	0.026	FALSE	0	0	0	2	0	FALSE	ACH-000219
A375_SKIN	PELI2--KTN1	1	1	PELI2	3527	chr14:56645182:+	KTN1	51853	chr14:56133959:+	ONLY_REF_SPLICE	YES	19	473	0.1	0	0.013	0.013	PELI2->chr14:56584532-56768244:+,pellino_E3_ubiquitin_protein_ligase_family_member_2,KTN1->Oncogene{Bushman},chr14:56025790-56168244:+,kinectin_1	A375_SKIN	0	0.1	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000219
A375_SKIN	PROSC--CHMP1A	1	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	145	497	0.01	0	0.013	0.013	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	A375_SKIN	0	0.01	0.026	FALSE	13	55	3	29	0	FALSE	ACH-000219
A375_SKIN	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	2	87	0.5	0.02	0.013	0.013	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	A375_SKIN	0.02	0.5	0.026	FALSE	16	356	14	466	0	FALSE	ACH-000219
A375_SKIN	TIMM23--RP11-464F9.1	1	1	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	694	4	0	0.33	0.013	0.013	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	A375_SKIN	0	0.33	0.026	FALSE	5	8	0	33	0	FALSE	ACH-000219
A375_SKIN	UBAP1--UBE2R2	1	1	UBAP1	1236	chr9:34179238:+	UBE2R2	16187	chr9:33886879:+	ONLY_REF_SPLICE	YES	219	215	0.01	0.01	0.013	0.013	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Muscle=[count:6=pct:2.6],Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4]},GTEx_v2:{count=2;pct=0.02%;dist=Vagina=1,Muscle_-_Skeletal=1},UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	A375_SKIN	0.01	0.01	0.026	FALSE	8	5	0	9	0	FALSE	ACH-000219
A375_SKIN	WWOX--CLEC3A	1	1	WWOX	6262	chr16:78149051:+	CLEC3A	38815	chr16:78085855:+	ONLY_REF_SPLICE	NO	31	0	0.06	1	0.013	0.013	LOCAL_REARRANGEMENT:+:[32652],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,CLEC3A->C-type_lectin_domain_family_3_member_A,chr16:78056412-78100658:+	A375_SKIN	0.06	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000219
A375_SKIN	ZNF736--CHMP1A	1	1	ZNF736	8361	chr7:63797360:+	CHMP1A	24290	chr16:89713739:-	ONLY_REF_SPLICE	YES	23	497	0.08	0	0.013	0.013	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adipose_Tissue=[count:2=pct:0.7],Breast=[count:2=pct:1.8],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Lung=[count:1=pct:0.6]},GTEx_v2:{count=25;pct=0.29%;dist=Thyroid=4,Cells_-_Transformed_fibroblasts=3,Breast_-_Mammary_Tissue=2,Esophagus_-_Mucosa=2,Ovary=1,Pancreas=1,Lung=1,Vagina=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Spleen=1,Colon_-_Sigmoid=1,Testis=1,Colon_-_Transverse=1},ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	A375_SKIN	0	0.08	0.026	FALSE	10	14	2	10	0	FALSE	ACH-000219
253J_URINARY_TRACT	MCU--RP11-344N10.2	171	54	MCU	9177	chr10:74594186:+	RP11-344N10.2	22137	chr10:74831065:+	INCL_NON_REF_SPLICE	YES	27	0	0.89	1	2.0557	0.6492	MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter,RP11-344N10.2->chr10:74831053-74833766:+	253J_URINARY_TRACT	0.89	1	2.7049	TRUE	0	0	0	2	0	TRUE	ACH-000011
253J_URINARY_TRACT	MT-TA--MT-TN	159	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.9114	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253J_URINARY_TRACT	1	1	1.9114	FALSE	369	2501	205	193	0	FALSE	ACH-000011
253J_URINARY_TRACT	SPP1--RPL15	134	0	SPP1	6794	chr4:88903712:+	RPL15	11975	chr3:23959366:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6109	0	SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1,RPL15->chr3:23958036-23965183:+,ribosomal_protein_L15	253J_URINARY_TRACT	1	1	1.6109	TRUE	0	0	0	1	0	TRUE	ACH-000011
253J_URINARY_TRACT	USP34--XPO1	82	11	USP34	1120	chr2:61697785:-	XPO1	85339	chr2:61729445:-	ONLY_REF_SPLICE	YES	5	94	0.95	0.5	0.9858	0.1322	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	253J_URINARY_TRACT	0.5	0.95	1.118	TRUE	0	1	0	4	1	TRUE	ACH-000011
253J_URINARY_TRACT	TIMM23B--LINC00843	76	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9136	0.2525	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	253J_URINARY_TRACT	0.99	1	1.1661	TRUE	508	994	45	981	0	FALSE	ACH-000011
253J_URINARY_TRACT	SHISA9--U91319.1	67	9	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	39	0	0.66	1	0.8055	0.1082	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	253J_URINARY_TRACT	0.66	1	0.9137	FALSE	4	37	0	19	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-TA--MT-TC	60	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7213	0.0962	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	253J_URINARY_TRACT	1	1	0.8175	FALSE	462	80	0	856	0	FALSE	ACH-000011
253J_URINARY_TRACT	GPR126--VTA1	55	22	GPR126	10409	chr6:142714137:+	VTA1	40534	chr6:142510563:+	ONLY_REF_SPLICE	YES	314	129	0.2	0.37	0.6612	0.2645	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	253J_URINARY_TRACT	0.2	0.37	0.9257	TRUE	0	0	0	2	0	TRUE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	7	205	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	10	2	0.95	0.99	0.0842	2.4644	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	0.95	0.99	2.5486	FALSE	344	826	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	3	211	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	72	0	0.75	1	0.0361	2.5366	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	0.75	1	2.5727	FALSE	344	827	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	TIMM23--RP11-464F9.1	48	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	286	7	0.15	0.88	0.577	0.012	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	253J_URINARY_TRACT	0.15	0.88	0.589	TRUE	519	3926	326	965	0	FALSE	ACH-000011
253J_URINARY_TRACT	IMMP2L--DOCK4	45	1	IMMP2L	1667	chr7:111201907:-	DOCK4	48299	chr7:111462512:-	ONLY_REF_SPLICE	YES	33	33	0.58	0.58	0.541	0.012	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4	253J_URINARY_TRACT	0.58	0.58	0.553	TRUE	0	0	0	2	0	TRUE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	7	152	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	2	0.96	0.99	0.0842	1.8273	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	0.96	0.99	1.9115	FALSE	344	821	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	3	150	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	10	2	0.94	0.99	0.0361	1.8033	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	0.94	0.99	1.8394	FALSE	344	826	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND6--MT-TE	39	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.4688	0.0601	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	253J_URINARY_TRACT	0.96	1	0.5289	FALSE	499	1288	110	792	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	3	141	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	12	2	0.92	0.99	0.0361	1.6951	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	0.92	0.99	1.7312	FALSE	344	826	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	28	34	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	72	0	0.46	1	0.3366	0.4087	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	0.46	1	0.7453	FALSE	344	826	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	29	13	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	47	4	0.47	0.91	0.3486	0.1563	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.47	0.91	0.5049	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-TA--MT-TN	9	82	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1082	0.9858	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253J_URINARY_TRACT	1	1	1.094	FALSE	369	2501	205	193	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND6--MT-TE	25	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.3005	0.1563	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	253J_URINARY_TRACT	0.88	1	0.4568	FALSE	499	1288	110	792	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-TA--MT-TN	15	50	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1803	0.6011	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253J_URINARY_TRACT	1	1	0.7814	FALSE	369	2501	205	193	0	FALSE	ACH-000011
253J_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	23	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.95	0.97	0.2765	0.1563	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	253J_URINARY_TRACT	0.95	0.97	0.4328	FALSE	515	4851	409	746	0	FALSE	ACH-000011
253J_URINARY_TRACT	RP11-123O10.4--GRIP1	24	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2885	0.0962	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	253J_URINARY_TRACT	1	1	0.3847	FALSE	416	2512	207	587	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	17	34	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12992	0	0	1	0.2044	0.4087	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	0	1	0.6131	FALSE	344	827	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-TA--MT-TN	18	29	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2164	0.3486	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253J_URINARY_TRACT	1	1	0.565	FALSE	369	2501	205	193	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND6--MT-TE	21	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.2525	0.0601	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	253J_URINARY_TRACT	0.93	1	0.3126	FALSE	499	1288	110	792	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-TA--MT-TC	19	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2284	0.0721	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	253J_URINARY_TRACT	1	1	0.3005	FALSE	462	80	0	856	0	FALSE	ACH-000011
253J_URINARY_TRACT	RBPMS--SMIM18	19	6	RBPMS	1731	chr8:30242674:+	SMIM18	33509	chr8:30502009:+	ONLY_REF_SPLICE	YES	21	0	0.54	1	0.2284	0.0721	NEIGHBORS[66339],RBPMS->RNA_binding_protein_with_multiple_splicing,chr8:30241944-30429778:+,SMIM18->chr8:30496117-30503581:+,small_integral_membrane_protein_18	253J_URINARY_TRACT	0.54	1	0.3005	FALSE	0	0	0	2	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	3	65	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	6	3	0.92	0.96	0.0361	0.7814	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	0.92	0.96	0.8175	FALSE	344	821	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	RBPMS--SMIM18	17	5	RBPMS	1731	chr8:30242674:+	SMIM18	33527	chr8:30502027:+	INCL_NON_REF_SPLICE	YES	21	1	0.51	0.96	0.2044	0.0601	NEIGHBORS[66339],RBPMS->RNA_binding_protein_with_multiple_splicing,chr8:30241944-30429778:+,SMIM18->chr8:30496117-30503581:+,small_integral_membrane_protein_18	253J_URINARY_TRACT	0.51	0.96	0.2645	FALSE	0	0	0	2	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-TA--MT-TN	8	36	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0962	0.4328	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253J_URINARY_TRACT	1	1	0.529	FALSE	369	2501	205	193	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	8	34	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1168	0	0.03	1	0.0962	0.4087	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	0.03	1	0.5049	FALSE	344	827	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	13	13	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	47	3	0.36	0.9	0.1563	0.1563	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.36	0.9	0.3126	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	NRIP1--AF127936.7	16	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1923	0.012	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	253J_URINARY_TRACT	1	1	0.2043	FALSE	292	1546	117	613	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	3	48	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1677	0	0.03	1	0.0361	0.577	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	0.03	1	0.6131	FALSE	344	827	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-TA--MT-TN	15	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1803	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253J_URINARY_TRACT	1	1	0.1803	FALSE	369	2501	205	193	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND6--MT-ND5	14	1	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	2139	1	0.01	0.1683	0.012	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	253J_URINARY_TRACT	0.01	1	0.1803	FALSE	101	855	57	72	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-TA--MT-TN	4	39	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0.4688	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253J_URINARY_TRACT	1	1	0.5169	FALSE	369	2501	205	193	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	10	14	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	48	2	0.33	0.92	0.1202	0.1683	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.33	0.92	0.2885	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-TA--MT-TN	7	24	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0.2885	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253J_URINARY_TRACT	1	1	0.3727	FALSE	369	2501	205	193	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	4	34	MT-ND4	1452	chrM:11211:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	932	0	0.04	1	0.0481	0.4087	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	0.04	1	0.4568	FALSE	344	827	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND6--COX7C	12	0	MT-ND6	1261	chrM:14413:-	COX7C	4608	chr5:85913803:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1443	0	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COX7C->chr5:85913721-85916779:+,cytochrome_c_oxidase_subunit_7C	253J_URINARY_TRACT	1	1	0.1443	FALSE	0	0	0	7	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND6--MT-TE	6	21	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.84	1	0.0721	0.2525	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	253J_URINARY_TRACT	0.84	1	0.3246	FALSE	499	1288	110	792	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-TA--MT-TN	11	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1322	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253J_URINARY_TRACT	1	1	0.1322	FALSE	369	2501	205	193	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	9	7	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	44	3	0.27	0.84	0.1082	0.0842	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.27	0.84	0.1924	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-TA--MT-TN	3	31	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0.3727	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253J_URINARY_TRACT	1	1	0.4088	FALSE	369	2501	205	193	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	4	24	MT-ND4	1093	chrM:10852:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	7	0	0.8	1	0.0481	0.2885	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	0.8	1	0.3366	FALSE	344	826	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	MTAP--CDKN2B-AS1	9	4	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	27457	chr9:22046750:+	ONLY_REF_SPLICE	YES	1	35	0.93	0.27	0.1082	0.0481	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	253J_URINARY_TRACT	0.27	0.93	0.1563	FALSE	0	3	0	6	0	FALSE	ACH-000011
253J_URINARY_TRACT	RP11-275N1.1--NEBL	10	0	RP11-275N1.1	1056	chr10:21661824:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1202	0	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	253J_URINARY_TRACT	1	1	0.1202	TRUE	0	0	0	21	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	6	15	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	47	1	0.31	0.95	0.0721	0.1803	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.31	0.95	0.2524	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	RP11-275N1.1--NEBL	9	3	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.1082	0.0361	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	253J_URINARY_TRACT	0.75	1	0.1443	TRUE	0	2	0	25	2	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	6	14	MT-ATP6	1249	chrM:8775:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	79	3	0.2	0.87	0.0721	0.1683	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.2	0.87	0.2404	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-TA--MT-TN	9	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1082	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253J_URINARY_TRACT	1	1	0.1082	FALSE	369	2501	205	193	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND6--MT-ND5	8	3	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	4078	1	0	0.0962	0.0361	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	253J_URINARY_TRACT	0	1	0.1323	FALSE	101	855	57	72	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	8	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	20	1	0.33	0.91	0.0962	0.024	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.33	0.91	0.1202	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	8	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	20	9	0.31	0.5	0.0962	0.012	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.31	0.5	0.1082	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	5	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	163	0	0.1	1	0.0601	0.1563	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	0.1	1	0.2164	FALSE	344	827	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	GPR126--VTA1	6	8	GPR126	7186	chr6:142703156:+	VTA1	41643	chr6:142519576:+	ONLY_REF_SPLICE	YES	372	112	0.04	0.11	0.0721	0.0962	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	253J_URINARY_TRACT	0.04	0.11	0.1683	TRUE	0	0	0	1	0	FALSE	ACH-000011
253J_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	4	16	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.95	0.0481	0.1923	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	253J_URINARY_TRACT	0.95	1	0.2404	FALSE	467	2173	244	435	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND6--MT-TE	3	19	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0361	0.2284	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	253J_URINARY_TRACT	0.92	1	0.2645	FALSE	499	1288	110	792	0	FALSE	ACH-000011
253J_URINARY_TRACT	APP--MT-ND2	7	2	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	2054	5316	0	0	0.0842	0.024	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	253J_URINARY_TRACT	0	0	0.1082	FALSE	0	1	0	51	0	FALSE	ACH-000011
253J_URINARY_TRACT	RP11-120D5.1--MID1	6	6	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	8	57	0.6	0.17	0.0721	0.0721	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	253J_URINARY_TRACT	0.17	0.6	0.1442	FALSE	16	356	14	466	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND6--MT-ND5	7	0	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	253J_URINARY_TRACT	1	1	0.0842	FALSE	101	855	57	72	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	253J_URINARY_TRACT	1	1	0.0842	FALSE	462	80	0	856	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-TA--MT-TN	7	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	253J_URINARY_TRACT	1	1	0.0842	FALSE	369	2501	205	193	0	FALSE	ACH-000011
253J_URINARY_TRACT	MYO9A--PKM	6	4	MYO9A	3811	chr15:72338065:-	PKM	77505	chr15:72501232:-	ONLY_REF_SPLICE	YES	11	1966	0.48	0.01	0.0721	0.0481	LOCAL_REARRANGEMENT:-:[80452],MYO9A->chr15:72114632-72410918:-,myosin_IXA,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	253J_URINARY_TRACT	0.01	0.48	0.1202	TRUE	0	0	0	1	0	FALSE	ACH-000011
253J_URINARY_TRACT	PCAT1--RP11-382A18.2	7	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	253J_URINARY_TRACT	1	1	0.0842	TRUE	4	84	1	46	0	FALSE	ACH-000011
253J_URINARY_TRACT	TMEM205--RPS28	7	0	TMEM205	3471	chr19:11453607:-	RPS28	6969	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0	TMEM205->chr19:11453452-11457194:-,transmembrane_protein_205,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	253J_URINARY_TRACT	1	1	0.0842	TRUE	0	1	0	3	1	TRUE	ACH-000011
253J_URINARY_TRACT	WTAPP1--RUVBL1	7	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0842	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	253J_URINARY_TRACT	1	1	0.0842	TRUE	9	252	6	66	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	6	2	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	25	3	0.24	0.73	0.0721	0.024	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.24	0.73	0.0961	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	6	2	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	20	2	0.29	0.8	0.0721	0.024	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.29	0.8	0.0961	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	3	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	163	0	0.09	1	0.0361	0.1563	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	0.09	1	0.1924	FALSE	344	827	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	3	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	46	0	0.26	1	0.0361	0.1563	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	0.26	1	0.1924	FALSE	344	826	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND6--MT-TE	3	13	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0361	0.1563	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	253J_URINARY_TRACT	0.94	1	0.1924	FALSE	499	1288	110	792	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-TA--MT-TC	4	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0.1082	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	253J_URINARY_TRACT	1	1	0.1563	FALSE	462	80	0	856	0	FALSE	ACH-000011
253J_URINARY_TRACT	SAMD5--SASH1	6	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	8	6	0.47	0.54	0.0721	0.012	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	253J_URINARY_TRACT	0.47	0.54	0.0841	TRUE	53	396	64	110	0	FALSE	ACH-000011
253J_URINARY_TRACT	TMSB10--RPS2	6	0	TMSB10	1922	chr2:85133670:+	RPS2	7643	chr16:2012266:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0721	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2	253J_URINARY_TRACT	1	1	0.0721	TRUE	0	0	0	3	0	TRUE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	5	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	27	3	0.21	0.7	0.0601	0.024	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.21	0.7	0.0841	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	5	2	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	21	2	0.25	0.78	0.0601	0.024	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.25	0.78	0.0841	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	USP34--XPO1	3	10	USP34	1120	chr2:61697785:-	XPO1	85609	chr2:61729175:-	ONLY_REF_SPLICE	YES	5	109	0.72	0.11	0.0361	0.1202	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	253J_URINARY_TRACT	0.11	0.72	0.1563	TRUE	0	1	0	4	1	TRUE	ACH-000011
253J_URINARY_TRACT	UBXN2A--NCOA1	5	1	UBXN2A	2468	chr2:24162546:+	NCOA1	31430	chr2:24914350:+	INCL_NON_REF_SPLICE	YES	6	3	0.5	0.67	0.0601	0.012	UBXN2A->UBX_domain_protein_2A,chr2:24150155-24227779:+,NCOA1->Oncogene{Bushman},chr2:24714783-24993571:+,nuclear_receptor_coactivator_1	253J_URINARY_TRACT	0.5	0.67	0.0721	TRUE	0	0	0	2	0	TRUE	ACH-000011
253J_URINARY_TRACT	ANXA1--ALDH1A1	5	0	ANXA1	1168	chr9:75766840:+	ALDH1A1	21839	chr9:75555168:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0601	0	LOCAL_INVERSION:+:-:[71315],ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+,ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-	253J_URINARY_TRACT	1	1	0.0601	TRUE	0	0	0	4	0	TRUE	ACH-000011
253J_URINARY_TRACT	CALM3--MT-ATP8	5	0	CALM3	8081	chr19:47113583:+	MT-ATP8	11589	chrM:8406:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0601	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	253J_URINARY_TRACT	1	1	0.0601	FALSE	12	0	0	26	0	FALSE	ACH-000011
253J_URINARY_TRACT	GPR126--VTA1	1	16	GPR126	10409	chr6:142714137:+	VTA1	41643	chr6:142519576:+	ONLY_REF_SPLICE	YES	314	112	0.05	0.13	0.012	0.1923	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	253J_URINARY_TRACT	0.05	0.13	0.2043	TRUE	0	0	0	2	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	4	4	MT-ATP6	1144	chrM:8670:+	MT-CO2	4926	chrM:7830:+	INCL_NON_REF_SPLICE	YES	44	13	0.15	0.38	0.0481	0.0481	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.15	0.38	0.0962	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	5	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0601	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	1	1	0.0601	FALSE	344	821	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	XXbac-BPG248L24.12--SPP1	4	4	XXbac-BPG248L24.12	1474	chr6:31324897:+	SPP1	5039	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	5	0	0.62	1	0.0481	0.0481	XXbac-BPG248L24.12->chr6:31324424-31325414:+,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	253J_URINARY_TRACT	0.62	1	0.0962	TRUE	0	0	0	5	0	TRUE	ACH-000011
253J_URINARY_TRACT	GPR126--VTA1	4	3	GPR126	5956	chr6:142691930:+	VTA1	41643	chr6:142519576:+	ONLY_REF_SPLICE	YES	350	112	0.02	0.06	0.0481	0.0361	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	253J_URINARY_TRACT	0.02	0.06	0.0842	TRUE	0	0	0	3	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	4	3	MT-ATP6	1142	chrM:8668:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	44	7	0.14	0.5	0.0481	0.0361	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.14	0.5	0.0842	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	NEGR1--PTGER3	4	3	NEGR1	9662	chr1:72058500:-	PTGER3	28535	chr1:71478167:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0481	0.0361	NEGR1->chr1:71861623-72748417:-,neuronal_growth_regulator_1,PTGER3->chr1:71318036-71513491:-,prostaglandin_E_receptor_3	253J_URINARY_TRACT	0.88	1	0.0842	TRUE	0	0	0	2	0	TRUE	ACH-000011
253J_URINARY_TRACT	AKAP9--RP11-115N4.1	4	1	AKAP9	31847	chr7:91691800:+	RP11-115N4.1	72451	chr7:91096160:+	ONLY_REF_SPLICE	YES	21	0	0.19	1	0.0481	0.012	AKAP9->A-kinase_anchoring_protein_9,Oncogene{Bushman},chr7:91570181-91739987:+,RP11-115N4.1->chr7:90940683-91144724:+	253J_URINARY_TRACT	0.19	1	0.0601	TRUE	0	0	0	1	0	TRUE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	4	1	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	26	7	0.16	0.42	0.0481	0.012	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.16	0.42	0.0601	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	4	1	MT-ATP6	1098	chrM:8624:+	MT-CO2	5182	chrM:8086:+	INCL_NON_REF_SPLICE	YES	17	5	0.23	0.5	0.0481	0.012	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.23	0.5	0.0601	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	APP--MT-ND2	4	0	APP	11619	chr21:27394230:-	MT-ND2	32998	chrM:5292:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	253J_URINARY_TRACT	1	1	0.0481	FALSE	0	1	0	51	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	3	4	MT-ATP6	1413	chrM:8939:+	MT-CO2	5052	chrM:7956:+	INCL_NON_REF_SPLICE	YES	99	10	0.07	0.41	0.0361	0.0481	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.07	0.41	0.0842	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	3	4	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	34	4	0.17	0.64	0.0361	0.0481	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	0.17	0.64	0.0842	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	1	1	0.0481	FALSE	344	821	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	4	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	1	1	0.0481	FALSE	344	821	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	NRIP1--AF127936.7	3	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.24	1	0.0361	0.0481	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	253J_URINARY_TRACT	0.24	1	0.0842	FALSE	125	705	46	456	0	FALSE	ACH-000011
253J_URINARY_TRACT	RP11-120D5.1--MID1	2	6	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	57	0.57	0.12	0.024	0.0721	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	253J_URINARY_TRACT	0.12	0.57	0.0961	FALSE	0	48	1	163	0	FALSE	ACH-000011
253J_URINARY_TRACT	CTB-113P19.1--FTL	3	1	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0.012	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	253J_URINARY_TRACT	1	1	0.0481	TRUE	0	2	0	13	2	TRUE	ACH-000011
253J_URINARY_TRACT	MB21D2--FGF12	3	1	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	49	15	0.08	0.21	0.0361	0.012	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	253J_URINARY_TRACT	0.08	0.21	0.0481	FALSE	0	17	0	46	0	FALSE	ACH-000011
253J_URINARY_TRACT	NRIP1--AF127936.7	2	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	46	0	0.13	1	0.024	0.0601	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	253J_URINARY_TRACT	0.13	1	0.0841	FALSE	164	806	69	479	0	FALSE	ACH-000011
253J_URINARY_TRACT	RP11-973F15.1--RP11-94A24.1	3	1	RP11-973F15.1	3763	chr8:123682599:-	RP11-94A24.1	7870	chr8:123429261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0.012	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	253J_URINARY_TRACT	1	1	0.0481	TRUE	0	2	0	7	2	TRUE	ACH-000011
253J_URINARY_TRACT	ZNF503-AS2--C10orf11	3	1	ZNF503-AS2	2261	chr10:77162019:+	C10orf11	15320	chr10:77795766:+	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0361	0.012	GTEx_FI:{Brain=[count:26=pct:3.9]},ZNF503-AS2->ZNF503_antisense_RNA_2,chr10:77160759-77168738:+,C10orf11->chr10:77360998-78319925:+,chromosome_10_open_reading_frame_11	253J_URINARY_TRACT	0.44	1	0.0481	TRUE	21	7	0	2	0	FALSE	ACH-000011
253J_URINARY_TRACT	APP--MT-ND2	3	0	APP	11633	chr21:27394216:-	MT-ND2	33011	chrM:5305:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	253J_URINARY_TRACT	1	1	0.0361	FALSE	0	1	0	51	0	FALSE	ACH-000011
253J_URINARY_TRACT	EIF4G1--MT-CO2	3	0	EIF4G1	8049	chr3:184039713:+	MT-CO2	21765	chrM:7619:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	EIF4G1->Oncogene{Bushman},chr3:184032283-184053146:+,eukaryotic_translation_initiation_factor_4_gamma_1,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	1	1	0.0361	FALSE	0	0	0	1	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ATP6--MT-CO2	3	0	MT-ATP6	1046	chrM:8572:+	MT-CO2	4902	chrM:7806:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	253J_URINARY_TRACT	1	1	0.0361	FALSE	59	21	0	114	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	253J_URINARY_TRACT	1	1	0.0361	FALSE	344	821	44	306	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND6--MT-ND5	3	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	253J_URINARY_TRACT	1	1	0.0361	FALSE	101	855	57	72	0	FALSE	ACH-000011
253J_URINARY_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	253J_URINARY_TRACT	1	1	0.0361	FALSE	499	1288	110	792	0	FALSE	ACH-000011
253J_URINARY_TRACT	RP11-120D5.1--MID1	1	8	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	8	19	0.53	0.32	0.012	0.0962	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	253J_URINARY_TRACT	0.32	0.53	0.1082	FALSE	0	23	1	67	0	FALSE	ACH-000011
253J_URINARY_TRACT	TMSB10--RPS2	3	0	TMSB10	1889	chr2:85133637:+	RPS2	7385	chr16:2012524:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2	253J_URINARY_TRACT	1	1	0.0361	TRUE	0	0	0	3	0	TRUE	ACH-000011
253J_URINARY_TRACT	RP11-275N1.1--NEBL	2	3	RP11-275N1.1	4358	chr10:21643600:-	NEBL	14143	chr10:21309130:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.024	0.0361	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	253J_URINARY_TRACT	1	1	0.0601	TRUE	0	0	0	1	0	TRUE	ACH-000011
253J_URINARY_TRACT	RP11-275N1.1--NEBL	2	3	RP11-275N1.1	4358	chr10:21643600:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0.0361	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	253J_URINARY_TRACT	1	1	0.0601	TRUE	0	0	0	2	0	TRUE	ACH-000011
253J_URINARY_TRACT	UBXN2A--NCOA1	2	2	UBXN2A	3440	chr2:24163518:+	NCOA1	31430	chr2:24914350:+	ONLY_REF_SPLICE	YES	14	3	0.22	0.57	0.024	0.024	UBXN2A->UBX_domain_protein_2A,chr2:24150155-24227779:+,NCOA1->Oncogene{Bushman},chr2:24714783-24993571:+,nuclear_receptor_coactivator_1	253J_URINARY_TRACT	0.22	0.57	0.048	TRUE	0	0	0	2	0	TRUE	ACH-000011
253J_URINARY_TRACT	GPR126--VTA1	1	5	GPR126	11367	chr6:142715095:+	VTA1	44067	chr6:142539635:+	ONLY_REF_SPLICE	YES	340	199	0.02	0.03	0.012	0.0601	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	253J_URINARY_TRACT	0.02	0.03	0.0721	TRUE	0	0	0	1	0	FALSE	ACH-000011
253J_URINARY_TRACT	VTI1A--RP11-57H14.3	2	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	30	0	0.09	1	0.024	0.012	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	253J_URINARY_TRACT	0.09	1	0.036	FALSE	272	151	14	158	0	FALSE	ACH-000011
253J_URINARY_TRACT	ALDH1A1--ANXA1	2	0	ALDH1A1	4560	chr9:75567851:-	ANXA1	30154	chr9:75780032:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx_v2:{count=2;pct=0.02%;dist=Uterus=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[71315],ALDH1A1->aldehyde_dehydrogenase_1_family_member_A1,chr9:75515578-75695358:-,ANXA1->Oncogene{Bushman},annexin_A1,chr9:75766673-75785309:+	253J_URINARY_TRACT	1	1	0.024	TRUE	0	0	0	2	0	TRUE	ACH-000011
253J_URINARY_TRACT	CHCHD3--EXOC4	2	0	CHCHD3	2325	chr7:132754902:-	EXOC4	41339	chr7:133314798:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	253J_URINARY_TRACT	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000011
253J_URINARY_TRACT	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	253J_URINARY_TRACT	1	1	0.024	TRUE	347	1186	183	220	0	FALSE	ACH-000011
253J_URINARY_TRACT	MPLKIP--C7orf10	2	0	MPLKIP	1431	chr7:40173828:-	C7orf10	32310	chr7:40789033:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	LOCAL_INVERSION:-:+:[317],MPLKIP->M-phase_specific_PLK1_interacting_protein,chr7:40165622-40174258:-,C7orf10->chr7:40174575-40900362:+	253J_URINARY_TRACT	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000011
253J_URINARY_TRACT	PHF20--RBM39	2	0	PHF20	4583	chr20:34389527:+	RBM39	45958	chr20:34313077:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx_v2:{count=2;pct=0.02%;dist=Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1},{Klijn_CCL:Stomach=1},LOCAL_INVERSION:+:-:[29662],PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	253J_URINARY_TRACT	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000011
253J_URINARY_TRACT	REXO2--NUP214	2	0	REXO2	4595	chr11:114314655:+	NUP214	49555	chr9:134090599:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	REXO2->RNA_exonuclease_2,chr11:114310108-114321001:+,NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa	253J_URINARY_TRACT	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000011
253J_URINARY_TRACT	RP11-219B17.1--ITPR2	2	0	RP11-219B17.1	11656	chr15:60893256:+	ITPR2	35624	chr12:26808785:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	RP11-219B17.1->chr15:60771377-60922836:+,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	253J_URINARY_TRACT	1	1	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000011
253J_URINARY_TRACT	TMLHE--CLIC2	2	0	TMLHE	2332	chrX:154842453:-	CLIC2	18105	chrX:154528458:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6]},TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,CLIC2->chloride_intracellular_channel_2,chrX:154505500-154563966:-	253J_URINARY_TRACT	1	1	0.024	TRUE	5	6	1	7	0	FALSE	ACH-000011
253J_URINARY_TRACT	TRAPPC9--KCNK9	2	0	TRAPPC9	55504	chr8:140898123:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	253J_URINARY_TRACT	1	1	0.024	FALSE	7	13	2	16	0	FALSE	ACH-000011
253J_URINARY_TRACT	GPR126--VTA1	1	2	GPR126	2987	chr6:142630781:+	VTA1	40534	chr6:142510563:+	ONLY_REF_SPLICE	YES	558	129	0.01	0.02	0.012	0.024	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	253J_URINARY_TRACT	0.01	0.02	0.036	FALSE	0	0	0	2	0	FALSE	ACH-000011
253J_URINARY_TRACT	ALG14--ABCD3	1	1	ALG14	2335	chr1:95530422:-	ABCD3	33963	chr1:94953098:+	ONLY_REF_SPLICE	YES	55	168	0.04	0.01	0.012	0.012	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},ALG14->ALG14,_UDP-N-acetylglucosaminyltransferase_subunit,Oncogene{Bushman},chr1:95439963-95538501:-,ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+	253J_URINARY_TRACT	0.01	0.04	0.024	FALSE	0	0	0	2	0	FALSE	ACH-000011
253J_URINARY_TRACT	AP2A1--CTC-326K19.6	1	1	AP2A1	3201	chr19:50285981:+	CTC-326K19.6	22796	chr19:50413141:-	ONLY_REF_SPLICE	YES	186	0	0.01	1	0.012	0.012	AP2A1->adaptor_related_protein_complex_2_alpha_1_subunit,chr19:50270225-50310370:+,CTC-326K19.6->chr19:50412758-50461648:-	253J_URINARY_TRACT	0.01	1	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000011
253J_URINARY_TRACT	CRIM1--FEZ2	1	1	CRIM1	18863	chr2:36749456:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	348	119	0.01	0.02	0.012	0.012	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	253J_URINARY_TRACT	0.01	0.02	0.024	FALSE	2	2	0	15	0	FALSE	ACH-000011
253J_URINARY_TRACT	EEF1A1--ACTR3	1	1	EEF1A1	5898	chr6:74228077:-	ACTR3	16614	chr2:114688878:+	ONLY_REF_SPLICE	YES	14449	462	0	0	0.012	0.012	EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1,ACTR3->ARP3_actin-related_protein_3_homolog_(yeast),chr2:114647537-114720173:+	253J_URINARY_TRACT	0	0	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000011
253J_URINARY_TRACT	HMGA2--LUM	1	1	HMGA2	5315	chr12:66232349:+	LUM	30462	chr12:91498096:-	ONLY_REF_SPLICE	YES	133	1	0.01	0.67	0.012	0.012	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,LUM->chr12:91496406-91505608:-,lumican	253J_URINARY_TRACT	0.01	0.67	0.024	FALSE	0	0	0	8	0	FALSE	ACH-000011
253J_URINARY_TRACT	RP11-973F15.1--RP11-94A24.1	1	1	RP11-973F15.1	2854	chr8:123683508:-	RP11-94A24.1	7870	chr8:123429261:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.012	0.012	RP11-973F15.1->chr8:123682624-123706345:-,RP11-94A24.1->chr8:123426571-123440790:-	253J_URINARY_TRACT	0.67	1	0.024	TRUE	0	2	0	7	2	TRUE	ACH-000011
253J_URINARY_TRACT	SHISA9--U91319.1	1	1	SHISA9	9974	chr16:13297406:+	U91319.1	24024	chr16:13568067:+	ONLY_REF_SPLICE	NO	39	4	0.05	0.33	0.012	0.012	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	253J_URINARY_TRACT	0.05	0.33	0.024	FALSE	1	17	0	8	0	FALSE	ACH-000011
253J_URINARY_TRACT	XKR9--RP11-326E22.1	1	1	XKR9	8344	chr8:71619388:+	RP11-326E22.1	17622	chr8:72071174:+	ONLY_REF_SPLICE	NO	21	0	0.09	1	0.012	0.012	GTEx_FI:{Brain=[count:4=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Liver=[count:1=pct:0.8]},XKR9->XK_related_9,chr8:71581600-71702606:+,RP11-326E22.1->chr8:72067692-72116458:+	253J_URINARY_TRACT	0.09	1	0.024	TRUE	0	0	0	1	0	FALSE	ACH-000011
253J_URINARY_TRACT	XKR9--RP11-326E22.1	1	1	XKR9	8344	chr8:71619388:+	RP11-326E22.1	21087	chr8:72111375:+	ONLY_REF_SPLICE	NO	21	0	0.09	1	0.012	0.012	GTEx_FI:{Brain=[count:4=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Liver=[count:1=pct:0.8]},XKR9->XK_related_9,chr8:71581600-71702606:+,RP11-326E22.1->chr8:72067692-72116458:+	253J_URINARY_TRACT	0.09	1	0.024	TRUE	5	29	0	13	0	FALSE	ACH-000011
NCIH2342_LUNG	RPS6KB1--VMP1	200	160	RPS6KB1	7326	chr17:57992064:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	94	299	0.79	0.55	2.3611	1.8889	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH2342_LUNG	0.55	0.79	4.25	TRUE	0	8	0	9	5	TRUE	ACH-000951
NCIH2342_LUNG	PLXND1--TFDP2	119	89	PLXND1	11171	chr3:129293179:-	TFDP2	42396	chr3:141713983:-	ONLY_REF_SPLICE	YES	64	176	0.76	0.54	1.4048	1.0507	PLXND1->chr3:129274018-129325661:-,plexin_D1,TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2	NCIH2342_LUNG	0.54	0.76	2.4555	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	TIMM23B--LINC00843	78	39	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9208	0.4604	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2342_LUNG	1	1	1.3812	TRUE	508	994	45	981	0	FALSE	ACH-000951
NCIH2342_LUNG	ERV3-1--PDE1A	57	62	ERV3-1	1203	chr7:64466919:-	PDE1A	15115	chr2:183129141:-	ONLY_REF_SPLICE	YES	43	0	0.73	1	0.6729	0.7319	ERV3-1->chr7:64451187-64467121:-,endogenous_retrovirus_group_3_member_1,PDE1A->chr2:183004763-183387919:-,phosphodiesterase_1A	NCIH2342_LUNG	0.73	1	1.4048	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	MT-TA--MT-TC	46	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.543	0.0236	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2342_LUNG	1	1	0.5666	FALSE	462	80	0	856	0	FALSE	ACH-000951
NCIH2342_LUNG	TIMM23--RP11-464F9.1	44	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	412	7	0.1	0.87	0.5194	0.0472	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2342_LUNG	0.1	0.87	0.5666	TRUE	519	3926	326	965	0	FALSE	ACH-000951
NCIH2342_LUNG	TSACC--CCT3	32	24	TSACC	3478	chr1:156309582:+	CCT3	12472	chr1:156305679:-	ONLY_REF_SPLICE	YES	4	506	0.93	0.1	0.3778	0.2833	NEIGHBORS_OVERLAP:+:-:[9681],TSACC->TSSK6_activating_co-chaperone,chr1:156307105-156316786:+,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	NCIH2342_LUNG	0.1	0.93	0.6611	FALSE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	TSACC--CCT3	27	30	TSACC	3478	chr1:156309582:+	CCT3	10194	chr1:156308028:-	INCL_NON_REF_SPLICE	YES	4	2	0.93	0.97	0.3187	0.3542	NEIGHBORS_OVERLAP:+:-:[9681],TSACC->TSSK6_activating_co-chaperone,chr1:156307105-156316786:+,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	NCIH2342_LUNG	0.93	0.97	0.6729	FALSE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	RPS6KB1--VMP1	16	62	RPS6KB1	15604	chr17:58018304:+	VMP1	41624	chr17:57917129:+	ONLY_REF_SPLICE	YES	70	378	0.53	0.17	0.1889	0.7319	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH2342_LUNG	0.17	0.53	0.9208	TRUE	0	0	0	3	0	TRUE	ACH-000951
NCIH2342_LUNG	RPS6KB1--VMP1	2	113	RPS6KB1	5427	chr17:57990165:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	107	299	0.52	0.28	0.0236	1.334	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	NCIH2342_LUNG	0.28	0.52	1.3576	TRUE	0	5	0	6	5	TRUE	ACH-000951
NCIH2342_LUNG	DNASE1L1--KIF1C	22	30	DNASE1L1	1222	chrX:153640228:-	KIF1C	13820	chr17:4903145:+	ONLY_REF_SPLICE	YES	0	55	1	0.49	0.2597	0.3542	DNASE1L1->chrX:153629579-153640449:-,deoxyribonuclease_I-like_1,KIF1C->chr17:4901243-4931696:+,kinesin_family_member_1C	NCIH2342_LUNG	0.49	1	0.6139	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	TSACC--CCT3	25	4	TSACC	2292	chr1:156308396:+	CCT3	12472	chr1:156305679:-	ONLY_REF_SPLICE	YES	0	506	1	0.05	0.2951	0.0472	NEIGHBORS_OVERLAP:+:-:[9681],TSACC->TSSK6_activating_co-chaperone,chr1:156307105-156316786:+,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	NCIH2342_LUNG	0.05	1	0.3423	FALSE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	KCNJ14--CABP5	18	29	KCNJ14	5766	chr19:48968663:+	CABP5	14922	chr19:48533839:-	INCL_NON_REF_SPLICE	YES	29	0	0.62	1	0.2125	0.3424	KCNJ14->chr19:48958766-48969367:+,potassium_voltage-gated_channel_subfamily_J_member_14,CABP5->calcium_binding_protein_5,chr19:48533210-48547310:-	NCIH2342_LUNG	0.62	1	0.5549	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	SETD5--ATP2B2	24	3	SETD5	1363	chr3:9439661:+	ATP2B2	43067	chr3:10452499:-	ONLY_REF_SPLICE	YES	11	0	0.71	1	0.2833	0.0354	SETD5->SET_domain_containing_5,chr3:9439299-9520924:+,ATP2B2->ATPase_plasma_membrane_Ca2+_transporting_2,chr3:10365707-10749716:-	NCIH2342_LUNG	0.71	1	0.3187	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	C15orf57--CBX3	19	21	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	44	63	0.48	0.39	0.2243	0.2479	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2342_LUNG	0.39	0.48	0.4722	TRUE	267	562	48	632	0	FALSE	ACH-000951
NCIH2342_LUNG	RP11-123O10.4--GRIP1	23	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2715	0.0472	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2342_LUNG	1	1	0.3187	FALSE	416	2512	207	587	0	FALSE	ACH-000951
NCIH2342_LUNG	DGKZ--HIPK3	19	18	DGKZ	10893	chr11:46389629:+	HIPK3	37979	chr11:33368839:+	ONLY_REF_SPLICE	YES	158	70	0.19	0.35	0.2243	0.2125	DGKZ->chr11:46354455-46402104:+,diacylglycerol_kinase_zeta,HIPK3->chr11:33278218-33378569:+,homeodomain_interacting_protein_kinase_3	NCIH2342_LUNG	0.19	0.35	0.4368	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	FAM63B--SLTM	15	28	FAM63B	8666	chr15:59124115:+	SLTM	28709	chr15:59204809:-	ONLY_REF_SPLICE	YES	25	159	0.63	0.21	0.1771	0.3306	LOCAL_INVERSION:+:-:[17145],FAM63B->chr15:59063391-59154099:+,family_with_sequence_similarity_63_member_B,SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-	NCIH2342_LUNG	0.21	0.63	0.5077	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	OR51S1--TP53I11	21	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2479	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH2342_LUNG	1	1	0.2479	TRUE	402	216	10	229	0	FALSE	ACH-000951
NCIH2342_LUNG	RP11-6N13.1--CTD-2374C24.1	17	15	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2007	0.1771	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH2342_LUNG	1	1	0.3778	TRUE	5	4	0	46	0	FALSE	ACH-000951
NCIH2342_LUNG	FAM63B--SLTM	14	24	FAM63B	8666	chr15:59124115:+	SLTM	29757	chr15:59193486:-	ONLY_REF_SPLICE	YES	25	158	0.6	0.19	0.1653	0.2833	LOCAL_INVERSION:+:-:[17145],FAM63B->chr15:59063391-59154099:+,family_with_sequence_similarity_63_member_B,SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-	NCIH2342_LUNG	0.19	0.6	0.4486	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	MT-ND4--MT-ATP8	17	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2007	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2342_LUNG	1	1	0.2007	FALSE	230	193	14	283	0	FALSE	ACH-000951
NCIH2342_LUNG	NPM1P24--SET	15	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1771	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2342_LUNG	1	1	0.1771	TRUE	0	0	0	434	0	FALSE	ACH-000951
NCIH2342_LUNG	PLXDC1--TAF13	14	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1653	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH2342_LUNG	1	1	0.1653	TRUE	7	10	0	216	0	FALSE	ACH-000951
NCIH2342_LUNG	EPB41L4A--FBXL17	11	3	EPB41L4A	12133	chr5:111594926:-	FBXL17	49024	chr5:107216880:-	ONLY_REF_SPLICE	YES	5	22	0.74	0.39	0.1299	0.0354	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},EPB41L4A->chr5:111478138-111755013:-,erythrocyte_membrane_protein_band_4.1_like_4A,FBXL17->F-box_and_leucine-rich_repeat_protein_17,chr5:107194736-107717799:-	NCIH2342_LUNG	0.39	0.74	0.1653	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	PLXND1--TFDP2	3	35	PLXND1	10038	chr3:129294312:-	TFDP2	42396	chr3:141713983:-	ONLY_REF_SPLICE	YES	101	176	0.27	0.18	0.0354	0.4132	PLXND1->chr3:129274018-129325661:-,plexin_D1,TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2	NCIH2342_LUNG	0.18	0.27	0.4486	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	PLXND1--TFDP2	8	13	PLXND1	8651	chr3:129297172:-	TFDP2	42396	chr3:141713983:-	ONLY_REF_SPLICE	YES	141	176	0.13	0.11	0.0944	0.1535	PLXND1->chr3:129274018-129325661:-,plexin_D1,TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2	NCIH2342_LUNG	0.11	0.13	0.2479	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	RP11-96H19.1--RP11-446N19.1	9	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.1062	0.0826	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2342_LUNG	0.89	1	0.1888	FALSE	407	2205	196	549	0	FALSE	ACH-000951
NCIH2342_LUNG	MT-ND4--MT-ATP8	10	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1181	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2342_LUNG	1	1	0.1181	FALSE	231	205	14	283	0	FALSE	ACH-000951
NCIH2342_LUNG	RP4-565E6.1--HYDIN	9	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1062	0.0354	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH2342_LUNG	1	1	0.1416	TRUE	456	1387	91	133	0	FALSE	ACH-000951
NCIH2342_LUNG	KCNJ14--CABP5	5	18	KCNJ14	5459	chr19:48968356:+	CABP5	14922	chr19:48533839:-	INCL_NON_REF_SPLICE	YES	55	0	0.29	1	0.059	0.2125	KCNJ14->chr19:48958766-48969367:+,potassium_voltage-gated_channel_subfamily_J_member_14,CABP5->calcium_binding_protein_5,chr19:48533210-48547310:-	NCIH2342_LUNG	0.29	1	0.2715	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	MT-ND4--MT-ATP8	9	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1062	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2342_LUNG	1	1	0.1062	FALSE	230	198	14	283	0	FALSE	ACH-000951
NCIH2342_LUNG	HMGN2--GSTP1	8	1	HMGN2	1164	chr1:26799104:+	GSTP1	8063	chr11:67351605:+	INCL_NON_REF_SPLICE	YES	962	112	0.01	0.07	0.0944	0.0118	GTEx&tcga_normals:1/3694=0.03%,HMGN2->chr1:26798941-26802463:+,high_mobility_group_nucleosomal_binding_domain_2,GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1	NCIH2342_LUNG	0.01	0.07	0.1062	TRUE	0	0	0	2	0	FALSE	ACH-000951
NCIH2342_LUNG	C15orf57--CBX3	3	18	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	43	63	0.33	0.25	0.0354	0.2125	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2342_LUNG	0.25	0.33	0.2479	TRUE	267	562	48	632	0	FALSE	ACH-000951
NCIH2342_LUNG	SLC1A5--MT-ND4L	7	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1121	0	0.01	1	0.0826	0.0236	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2342_LUNG	0.01	1	0.1062	FALSE	0	0	0	189	0	FALSE	ACH-000951
NCIH2342_LUNG	MT-TA--MT-TC	6	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0708	0.0472	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2342_LUNG	1	1	0.118	FALSE	462	80	0	856	0	FALSE	ACH-000951
NCIH2342_LUNG	MT-ND4--MT-ATP8	4	8	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	16637	1503	0	0.01	0.0472	0.0944	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2342_LUNG	0	0.01	0.1416	FALSE	231	217	16	283	0	FALSE	ACH-000951
NCIH2342_LUNG	PLXND1--TFDP2	1	20	PLXND1	9741	chr3:129294609:-	TFDP2	42396	chr3:141713983:-	ONLY_REF_SPLICE	YES	94	176	0.18	0.11	0.0118	0.2361	PLXND1->chr3:129274018-129325661:-,plexin_D1,TFDP2->chr3:141663277-141868386:-,transcription_factor_Dp-2	NCIH2342_LUNG	0.11	0.18	0.2479	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	RP11-96H19.1--RP11-446N19.1	5	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	3	0.82	0.75	0.059	0.0472	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2342_LUNG	0.75	0.82	0.1062	FALSE	515	4851	409	746	0	FALSE	ACH-000951
NCIH2342_LUNG	EIF3H--RP11-238I10.1	2	15	EIF3H	3765	chr8:117767905:-	RP11-238I10.1	23519	chr8:111639595:+	ONLY_REF_SPLICE	YES	1423	0	0.01	1	0.0236	0.1771	EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RP11-238I10.1->chr8:111621470-111644623:+	NCIH2342_LUNG	0.01	1	0.2007	TRUE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	MT-ND4--MT-ATP8	3	11	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2364	71	0.01	0.16	0.0354	0.1299	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2342_LUNG	0.01	0.16	0.1653	FALSE	216	209	16	281	0	FALSE	ACH-000951
NCIH2342_LUNG	RP11-120D5.1--MID1	5	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	30	0.8	0.21	0.059	0.0354	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2342_LUNG	0.21	0.8	0.0944	FALSE	16	356	14	466	0	FALSE	ACH-000951
NCIH2342_LUNG	MT-TA--MT-TC	4	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0.0708	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2342_LUNG	1	1	0.118	FALSE	462	80	0	856	0	FALSE	ACH-000951
NCIH2342_LUNG	FAM63B--SLTM	3	9	FAM63B	7519	chr15:59114018:+	SLTM	29757	chr15:59193486:-	ONLY_REF_SPLICE	YES	47	158	0.2	0.07	0.0354	0.1062	LOCAL_INVERSION:+:-:[17145],FAM63B->chr15:59063391-59154099:+,family_with_sequence_similarity_63_member_B,SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-	NCIH2342_LUNG	0.07	0.2	0.1416	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	KCNJ14--CABP5	5	1	KCNJ14	4559	chr19:48967456:+	CABP5	14922	chr19:48533839:-	INCL_NON_REF_SPLICE	YES	47	0	0.11	1	0.059	0.0118	KCNJ14->chr19:48958766-48969367:+,potassium_voltage-gated_channel_subfamily_J_member_14,CABP5->calcium_binding_protein_5,chr19:48533210-48547310:-	NCIH2342_LUNG	0.11	1	0.0708	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	MT-ND4--MT-ATP8	3	9	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15746	71	0	0.14	0.0354	0.1062	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2342_LUNG	0	0.14	0.1416	FALSE	231	217	16	283	0	FALSE	ACH-000951
NCIH2342_LUNG	AC093642.5--UBA3	4	4	AC093642.5	5696	chr2:243061208:+	UBA3	21616	chr3:69117159:-	ONLY_REF_SPLICE	YES	12	85	0.4	0.09	0.0472	0.0472	AC093642.5->chr2:243030784-243102304:+,UBA3->chr3:69103881-69129559:-,ubiquitin_like_modifier_activating_enzyme_3	NCIH2342_LUNG	0.09	0.4	0.0944	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.059	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2342_LUNG	1	1	0.059	FALSE	231	205	14	283	0	FALSE	ACH-000951
NCIH2342_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	17115	10	0	0.52	0.0354	0.0944	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2342_LUNG	0	0.52	0.1298	FALSE	231	217	16	283	0	FALSE	ACH-000951
NCIH2342_LUNG	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.059	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2342_LUNG	1	1	0.059	FALSE	462	80	0	856	0	FALSE	ACH-000951
NCIH2342_LUNG	RP11-96H19.1--RP11-446N19.1	3	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0.0944	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2342_LUNG	1	1	0.1298	FALSE	192	492	57	212	0	FALSE	ACH-000951
NCIH2342_LUNG	GTF2F2--RP11-321C24.1	3	6	GTF2F2	1207	chr13:45694856:+	RP11-321C24.1	15813	chr13:45657260:-	ONLY_REF_SPLICE	YES	353	0	0.02	1	0.0354	0.0708	LOCAL_INVERSION:+:-:[37390],GTF2F2->chr13:45694650-45858237:+,general_transcription_factor_IIF_subunit_2,RP11-321C24.1->chr13:45556212-45657260:-	NCIH2342_LUNG	0.02	1	0.1062	TRUE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	RP11-59N23.3--CMAS	3	6	RP11-59N23.3	1459	chr12:21815705:+	CMAS	6999	chr12:22208083:+	ONLY_REF_SPLICE	YES	10	129	0.47	0.07	0.0354	0.0708	RP11-59N23.3->chr12:21815247-21912966:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH2342_LUNG	0.07	0.47	0.1062	TRUE	0	14	5	5	10	TRUE	ACH-000951
NCIH2342_LUNG	TDRP--FBXO25	4	2	TDRP	3649	chr8:444494:-	FBXO25	21301	chr8:413007:+	ONLY_REF_SPLICE	YES	29	23	0.17	0.21	0.0472	0.0236	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Brain_-_Frontal_Cortex_(BA9)=1},LOCAL_INVERSION:-:+:[18578],TDRP->chr8:439803-495781:-,testis_development_related_protein,FBXO25->F-box_protein_25,chr8:356428-421225:+	NCIH2342_LUNG	0.17	0.21	0.0708	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	WDR43--SNUPN	4	2	WDR43	8889	chr2:29140861:+	SNUPN	26002	chr15:75918712:-	INCL_NON_REF_SPLICE	YES	136	0	0.04	1	0.0472	0.0236	WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+,SNUPN->chr15:75890424-75918810:-,snurportin_1	NCIH2342_LUNG	0.04	1	0.0708	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	18860	0	0	1	0.0354	0.059	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2342_LUNG	0	1	0.0944	FALSE	231	217	16	283	0	FALSE	ACH-000951
NCIH2342_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	18860	0	0	1	0.0354	0.059	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2342_LUNG	0	1	0.0944	FALSE	231	217	16	283	0	FALSE	ACH-000951
NCIH2342_LUNG	MT-ND4--MT-ATP8	4	1	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	18839	1503	0	0	0.0472	0.0118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2342_LUNG	0	0	0.059	FALSE	231	205	14	283	0	FALSE	ACH-000951
NCIH2342_LUNG	TDRP--FBXO25	4	1	TDRP	3649	chr8:444494:-	FBXO25	23440	chr8:418715:+	ONLY_REF_SPLICE	YES	29	21	0.15	0.19	0.0472	0.0118	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Brain_-_Frontal_Cortex_(BA9)=1},LOCAL_INVERSION:-:+:[18578],TDRP->chr8:439803-495781:-,testis_development_related_protein,FBXO25->F-box_protein_25,chr8:356428-421225:+	NCIH2342_LUNG	0.15	0.19	0.059	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	AC093642.5--UBA3	2	8	AC093642.5	6865	chr2:243064606:+	UBA3	23305	chr3:69112654:-	ONLY_REF_SPLICE	YES	6	45	0.62	0.18	0.0236	0.0944	AC093642.5->chr2:243030784-243102304:+,UBA3->chr3:69103881-69129559:-,ubiquitin_like_modifier_activating_enzyme_3	NCIH2342_LUNG	0.18	0.62	0.118	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	AC093642.5--UBA3	1	12	AC093642.5	8077	chr2:243073017:+	UBA3	21616	chr3:69117159:-	ONLY_REF_SPLICE	YES	6	85	0.68	0.13	0.0118	0.1417	AC093642.5->chr2:243030784-243102304:+,UBA3->chr3:69103881-69129559:-,ubiquitin_like_modifier_activating_enzyme_3	NCIH2342_LUNG	0.13	0.68	0.1535	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	FAM63B--SLTM	1	12	FAM63B	7519	chr15:59114018:+	SLTM	28709	chr15:59204809:-	ONLY_REF_SPLICE	YES	47	159	0.22	0.08	0.0118	0.1417	LOCAL_INVERSION:+:-:[17145],FAM63B->chr15:59063391-59154099:+,family_with_sequence_similarity_63_member_B,SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-	NCIH2342_LUNG	0.08	0.22	0.1535	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2342_LUNG	1	1	0.0472	FALSE	231	204	14	283	0	FALSE	ACH-000951
NCIH2342_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	19793	0	0	1	0.0354	0.0472	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2342_LUNG	0	1	0.0826	FALSE	231	216	16	283	0	FALSE	ACH-000951
NCIH2342_LUNG	RP11-123O10.4--GRIP1	3	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0.0472	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2342_LUNG	1	1	0.0826	FALSE	93	270	15	244	0	FALSE	ACH-000951
NCIH2342_LUNG	TSACC--CCT3	3	4	TSACC	2292	chr1:156308396:+	CCT3	10194	chr1:156308028:-	INCL_NON_REF_SPLICE	YES	0	2	1	0.78	0.0354	0.0472	NEIGHBORS_OVERLAP:+:-:[9681],TSACC->TSSK6_activating_co-chaperone,chr1:156307105-156316786:+,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	NCIH2342_LUNG	0.78	1	0.0826	FALSE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	AC093642.5--UBA3	1	11	AC093642.5	6865	chr2:243064606:+	UBA3	21616	chr3:69117159:-	ONLY_REF_SPLICE	YES	6	85	0.67	0.12	0.0118	0.1299	AC093642.5->chr2:243030784-243102304:+,UBA3->chr3:69103881-69129559:-,ubiquitin_like_modifier_activating_enzyme_3	NCIH2342_LUNG	0.12	0.67	0.1417	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	RP11-6N13.1--CTD-2374C24.1	1	10	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0118	0.1181	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH2342_LUNG	1	1	0.1299	TRUE	5	12	0	42	0	FALSE	ACH-000951
NCIH2342_LUNG	SLC2A1--MT-ND4L	3	2	SLC2A1	5836	chr1:43395605:-	MT-ND4L	13268	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1476	0	0	1	0.0354	0.0236	SLC2A1->chr1:43391052-43424530:-,solute_carrier_family_2_member_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2342_LUNG	0	1	0.059	FALSE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	KCNJ14--CABP5	3	1	KCNJ14	3540	chr19:48965695:+	CABP5	14922	chr19:48533839:-	ONLY_REF_SPLICE	YES	45	0	0.08	1	0.0354	0.0118	KCNJ14->chr19:48958766-48969367:+,potassium_voltage-gated_channel_subfamily_J_member_14,CABP5->calcium_binding_protein_5,chr19:48533210-48547310:-	NCIH2342_LUNG	0.08	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	ARID1A--MT-ND2	3	0	ARID1A	17261	chr1:27100327:+	MT-ND2	26825	chrM:4831:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH2342_LUNG	1	1	0.0354	FALSE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	DPH6-AS1--RP11-684B21.1	3	0	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	NCIH2342_LUNG	1	1	0.0354	TRUE	17	119	17	33	0	FALSE	ACH-000951
NCIH2342_LUNG	HMGN2--GSTP1	3	0	HMGN2	1141	chr1:26799081:+	GSTP1	7751	chr11:67351293:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx&tcga_normals:1/3694=0.03%,HMGN2->chr1:26798941-26802463:+,high_mobility_group_nucleosomal_binding_domain_2,GSTP1->chr11:67351066-67354131:+,glutathione_S-transferase_pi_1	NCIH2342_LUNG	1	1	0.0354	TRUE	0	0	0	2	0	TRUE	ACH-000951
NCIH2342_LUNG	MLK4--MT-ND4L	3	0	MLK4	14362	chr1:233518097:+	MT-ND4L	20161	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	MLK4->chr1:233463514-233520894:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2342_LUNG	1	1	0.0354	FALSE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	MT-ND1--KRT19	3	0	MT-ND1	1262	chrM:3568:+	KRT19	5384	chr17:39684133:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,KRT19->chr17:39679869-39684560:-,keratin_19	NCIH2342_LUNG	1	1	0.0354	FALSE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2342_LUNG	1	1	0.0354	FALSE	230	193	14	283	0	FALSE	ACH-000951
NCIH2342_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2342_LUNG	1	1	0.0354	FALSE	231	204	14	283	0	FALSE	ACH-000951
NCIH2342_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2342_LUNG	1	1	0.0354	FALSE	231	205	14	283	0	FALSE	ACH-000951
NCIH2342_LUNG	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2342_LUNG	1	1	0.0354	TRUE	0	0	0	434	0	FALSE	ACH-000951
NCIH2342_LUNG	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2342_LUNG	1	1	0.0354	TRUE	0	0	0	434	0	FALSE	ACH-000951
NCIH2342_LUNG	TKT--MT-ND1	3	0	TKT	1163	chr3:53289906:-	MT-ND1	21265	chrM:3315:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	TKT->chr3:53258723-53290068:-,transketolase,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH2342_LUNG	1	1	0.0354	FALSE	0	0	0	2	0	FALSE	ACH-000951
NCIH2342_LUNG	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0118	0.0826	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2342_LUNG	0.8	1	0.0944	FALSE	275	511	55	178	0	FALSE	ACH-000951
NCIH2342_LUNG	FAM63B--SLTM	1	6	FAM63B	6416	chr15:59102587:+	SLTM	28709	chr15:59204809:-	ONLY_REF_SPLICE	YES	34	159	0.17	0.04	0.0118	0.0708	LOCAL_INVERSION:+:-:[17145],FAM63B->chr15:59063391-59154099:+,family_with_sequence_similarity_63_member_B,SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-	NCIH2342_LUNG	0.04	0.17	0.0826	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	GTF2F2--RP11-321C24.1	2	2	GTF2F2	1207	chr13:45694856:+	RP11-321C24.1	16901	chr13:45620876:-	ONLY_REF_SPLICE	YES	353	0	0.01	1	0.0236	0.0236	LOCAL_INVERSION:+:-:[37390],GTF2F2->chr13:45694650-45858237:+,general_transcription_factor_IIF_subunit_2,RP11-321C24.1->chr13:45556212-45657260:-	NCIH2342_LUNG	0.01	1	0.0472	FALSE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	FAM63B--SLTM	1	5	FAM63B	6416	chr15:59102587:+	SLTM	29757	chr15:59193486:-	ONLY_REF_SPLICE	YES	34	158	0.15	0.04	0.0118	0.059	LOCAL_INVERSION:+:-:[17145],FAM63B->chr15:59063391-59154099:+,family_with_sequence_similarity_63_member_B,SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-	NCIH2342_LUNG	0.04	0.15	0.0708	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	NRIP1--AF127936.7	1	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	6	0	0.5	1	0.0118	0.059	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2342_LUNG	0.5	1	0.0708	FALSE	164	806	69	479	0	FALSE	ACH-000951
NCIH2342_LUNG	POLE4--RP11-355F16.1	2	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	443	1	0.01	0.75	0.0236	0.0118	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	NCIH2342_LUNG	0.01	0.75	0.0354	FALSE	5	7	0	37	0	FALSE	ACH-000951
NCIH2342_LUNG	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	3	1	0.67	0.0118	0.059	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2342_LUNG	0.67	1	0.0708	FALSE	467	2173	244	435	0	FALSE	ACH-000951
NCIH2342_LUNG	ABI1--FAM25C	2	0	ABI1	1341	chr10:27149676:-	FAM25C	21043	chr10:49205773:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,FAM25C->chr10:49199649-49207818:-,family_with_sequence_similarity_25_member_C	NCIH2342_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	BRI3--MRE11A	2	0	BRI3	2937	chr7:97911765:+	MRE11A	21469	chr11:94204925:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	BRI3->brain_protein_I3,chr7:97881691-97937162:+,MRE11A->ArcherDX_panel,FoundationOne_panel,MRE11_homolog_A,_double_strand_break_repair_nuclease,Oncogene{Bushman},chr11:94152895-94227074:-	NCIH2342_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	C6orf48--EXOC3	2	0	C6orf48	1844	chr6:31803228:+	EXOC3	18298	chr5:462075:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C6orf48->chr6:31802385-31807541:+,chromosome_6_open_reading_frame_48,EXOC3->chr5:443273-472052:+,exocyst_complex_component_3	NCIH2342_LUNG	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	EFCAB11--RP11-944C7.1	2	0	EFCAB11	7383	chr14:90397885:-	RP11-944C7.1	29223	chr14:90095480:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_FI:{Brain=[count:35=pct:5.3],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},EFCAB11->EF-hand_calcium_binding_domain_11,chr14:90261013-90421121:-,RP11-944C7.1->chr14:90095265-90109015:-	NCIH2342_LUNG	1	1	0.0236	TRUE	31	91	1	18	0	FALSE	ACH-000951
NCIH2342_LUNG	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2342_LUNG	1	1	0.0236	FALSE	292	1546	117	613	0	FALSE	ACH-000951
NCIH2342_LUNG	PPP1R12C--CNN2	2	0	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	NCIH2342_LUNG	1	1	0.0236	TRUE	35	34	3	30	0	FALSE	ACH-000951
NCIH2342_LUNG	RCC1--TBCA	2	0	RCC1	2175	chr1:28834672:+	TBCA	22542	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	NCIH2342_LUNG	1	1	0.0236	TRUE	0	3	0	7	0	TRUE	ACH-000951
NCIH2342_LUNG	RP11-6N13.1--CTD-2374C24.1	1	4	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	23469	chr5:104253599:-	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0118	0.0472	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH2342_LUNG	0.83	1	0.059	TRUE	0	0	0	4	0	FALSE	ACH-000951
NCIH2342_LUNG	TSACC--CCT3	1	4	TSACC	2292	chr1:156308396:+	CCT3	13442	chr1:156304709:-	ONLY_REF_SPLICE	YES	0	1868	1	0	0.0118	0.0472	NEIGHBORS_OVERLAP:+:-:[9681],TSACC->TSSK6_activating_co-chaperone,chr1:156307105-156316786:+,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	NCIH2342_LUNG	0	1	0.059	FALSE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	SRP54--KIAA0391	1	3	SRP54	4569	chr14:35465993:+	KIAA0391	28326	chr14:35649876:+	ONLY_REF_SPLICE	YES	659	205	0.01	0.02	0.0118	0.0354	LOCAL_INVERSION:+:+,chr14:[92279],SRP54->chr14:35451163-35498773:+,signal_recognition_particle_54kDa,KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+	NCIH2342_LUNG	0.01	0.02	0.0472	FALSE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	ERI1--ANKS1B	1	2	ERI1	9839	chr8:8877974:+	ANKS1B	25958	chr12:100219167:-	ONLY_REF_SPLICE	YES	177	1	0.02	0.75	0.0118	0.0236	ERI1->chr8:8859657-8974256:+,exoribonuclease_1,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	NCIH2342_LUNG	0.02	0.75	0.0354	TRUE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	RP11-120D5.1--MID1	1	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	2	30	0.6	0.09	0.0118	0.0236	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2342_LUNG	0.09	0.6	0.0354	FALSE	0	48	1	163	0	FALSE	ACH-000951
NCIH2342_LUNG	EEF2K--SLC9A5	1	1	EEF2K	15952	chr16:22285071:+	SLC9A5	40069	chr16:67304641:+	ONLY_REF_SPLICE	NO	24	19	0.08	0.1	0.0118	0.0118	EEF2K->chr16:22217603-22298554:+,eukaryotic_elongation_factor_2_kinase,SLC9A5->chr16:67271586-67306093:+,solute_carrier_family_9_member_A5	NCIH2342_LUNG	0.08	0.1	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	F2--ATG13	1	1	F2	7821	chr11:46750387:+	ATG13	17476	chr11:46651595:+	ONLY_REF_SPLICE	YES	1	67	0.67	0.03	0.0118	0.0118	LOCAL_REARRANGEMENT:+:[44362],F2->chr11:46740730-46761056:+,coagulation_factor_II,_thrombin,ATG13->autophagy_related_13,chr11:46638826-46696368:+	NCIH2342_LUNG	0.03	0.67	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0118	0.0118	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2342_LUNG	0.4	1	0.0236	FALSE	125	705	46	456	0	FALSE	ACH-000951
NCIH2342_LUNG	RP11-1057B8.2--RP11-452N4.1	1	1	RP11-1057B8.2	3793	chr8:135893523:+	RP11-452N4.1	8797	chr8:136300339:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0118	0.0118	RP11-1057B8.2->chr8:135862178-135894142:+,RP11-452N4.1->chr8:136246374-136311962:+	NCIH2342_LUNG	0.67	1	0.0236	TRUE	0	0	0	3	0	TRUE	ACH-000951
NCIH2342_LUNG	RP11-296O14.3--TNFSF4	1	1	RP11-296O14.3	1985	chr1:173429517:-	TNFSF4	11987	chr1:173157708:-	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0118	0.0118	RP11-296O14.3->chr1:173386932-173430501:-,TNFSF4->chr1:173152873-173176452:-,tumor_necrosis_factor_superfamily_member_4	NCIH2342_LUNG	0.5	1	0.0236	TRUE	0	3	0	3	3	TRUE	ACH-000951
NCIH2342_LUNG	RP4-565E6.1--HYDIN	1	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0118	0.0118	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH2342_LUNG	0.5	1	0.0236	TRUE	84	87	4	41	0	FALSE	ACH-000951
NCIH2342_LUNG	SETBP1--SLC14A2	1	1	SETBP1	12050	chr18:42533305:+	SLC14A2	23851	chr18:43063198:+	ONLY_REF_SPLICE	YES	10	0	0.17	1	0.0118	0.0118	SETBP1->Oncogene{Bushman},SET_binding_protein_1,chr18:42260138-42648475:+,SLC14A2->chr18:42792960-43263072:+,solute_carrier_family_14_member_2	NCIH2342_LUNG	0.17	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000951
NCIH2342_LUNG	SNHG8--DAG1	1	1	SNHG8	1429	chr4:119200292:+	DAG1	13195	chr3:49547852:+	ONLY_REF_SPLICE	YES	268	527	0.01	0	0.0118	0.0118	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,DAG1->chr3:49506146-49573048:+,dystroglycan_1	NCIH2342_LUNG	0	0.01	0.0236	FALSE	0	1	0	2	1	FALSE	ACH-000951
NCIH2342_LUNG	SRP54--KIAA0391	1	1	SRP54	4569	chr14:35465993:+	KIAA0391	29434	chr14:35735933:+	ONLY_REF_SPLICE	YES	659	246	0	0.01	0.0118	0.0118	LOCAL_INVERSION:+:+,chr14:[92279],SRP54->chr14:35451163-35498773:+,signal_recognition_particle_54kDa,KIAA0391->KIAA0391,chr14:35591052-35743271:+,chr14:35591755-35786680:+	NCIH2342_LUNG	0	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	TMEM123--YAP1	1	1	TMEM123	2732	chr11:102323255:-	YAP1	21477	chr11:102076624:+	ONLY_REF_SPLICE	YES	953	308	0	0.01	0.0118	0.0118	{Klijn_CCL:Head-Neck=1},TMEM123->chr11:102267063-102341115:-,transmembrane_protein_123,YAP1->Oncogene{Bushman},Yes_associated_protein_1,chr11:101981192-102104154:+	NCIH2342_LUNG	0	0.01	0.0236	FALSE	0	0	0	2	0	FALSE	ACH-000951
NCIH2342_LUNG	WDR60--ESYT2	1	1	WDR60	1173	chr7:158649441:+	ESYT2	36378	chr7:158591763:-	ONLY_REF_SPLICE	YES	41	110	0.05	0.02	0.0118	0.0118	LOCAL_INVERSION:+:-:[26325],WDR60->WD_repeat_domain_60,chr7:158649269-158749438:+,ESYT2->chr7:158523686-158622944:-,extended_synaptotagmin_protein_2	NCIH2342_LUNG	0.02	0.05	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000951
NCIH2342_LUNG	ZBTB43--RFWD2	1	1	ZBTB43	2250	chr9:129571194:+	RFWD2	25781	chr1:176055026:-	ONLY_REF_SPLICE	NO	31	101	0.06	0.02	0.0118	0.0118	ZBTB43->chr9:129567285-129600489:+,zinc_finger_and_BTB_domain_containing_43,RFWD2->chr1:175913967-176176629:-,ring_finger_and_WD_repeat_domain_2	NCIH2342_LUNG	0.02	0.06	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000951
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	182	88	UPF3A	4015	chr13:115052104:+	CDC16	26255	chr13:115027362:+	ONLY_REF_SPLICE	YES	107	131	0.72	0.67	2.4671	1.1929	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.72	3.66	TRUE	0	2	0	3	2	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UPF3A--CDC16	149	70	UPF3A	4015	chr13:115052104:+	CDC16	27247	chr13:115028354:+	ONLY_REF_SPLICE	YES	107	125	0.67	0.64	2.0197	0.9489	LOCAL_REARRANGEMENT:+:[8861],UPF3A->UPF3_regulator_of_nonsense_transcripts_homolog_A_(yeast),chr13:115047059-115071283:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.67	2.9686	TRUE	0	2	0	3	2	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	148	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.0062	0.3389	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.3451	TRUE	508	994	45	981	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	99	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	188	10	0.35	0.91	1.342	0.0271	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.91	1.3691	TRUE	519	3926	326	965	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP53--RPS10	74	10	RPL23AP53	1103	chr8:182129:-	RPS10	12585	chr6:34386201:-	ONLY_REF_SPLICE	YES	7	522	0.92	0.14	1.0031	0.1356	RPL23AP53->chr8:163186-182231:-,ribosomal_protein_L23a_pseudogene_53,RPS10->chr6:34385231-34393902:-,ribosomal_protein_S10	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.92	1.1387	TRUE	0	0	0	1	0	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	48	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6507	0.0407	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6914	FALSE	462	80	0	856	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP53--RPS10	32	13	RPL23AP53	2207	chr8:180804:-	RPS10	12585	chr6:34386201:-	ONLY_REF_SPLICE	YES	15	522	0.75	0.08	0.4338	0.1762	RPL23AP53->chr8:163186-182231:-,ribosomal_protein_L23a_pseudogene_53,RPS10->chr6:34385231-34393902:-,ribosomal_protein_S10	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.75	0.61	TRUE	0	0	0	1	0	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23AP53--RPS10	21	15	RPL23AP53	4131	chr8:169290:-	RPS10	12585	chr6:34386201:-	ONLY_REF_SPLICE	YES	6	522	0.86	0.06	0.2847	0.2033	RPL23AP53->chr8:163186-182231:-,ribosomal_protein_L23a_pseudogene_53,RPS10->chr6:34385231-34393902:-,ribosomal_protein_S10	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.86	0.488	TRUE	0	0	0	1	0	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	13	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1762	0.0813	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2575	FALSE	416	2512	207	587	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND1	14	1	MT-ND4	2043	chrM:11802:+	MT-ND1	5745	chrM:3673:+	INCL_NON_REF_SPLICE	NO	9862	6257	0	0	0.1898	0.0136	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[6498],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.2034	FALSE	51	52	3	16	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C10orf112--PLXDC2	12	1	C10orf112	32754	chr10:20079115:+	PLXDC2	37923	chr10:20290704:+	INCL_NON_REF_SPLICE	YES	2	17	0.87	0.43	0.1627	0.0136	NEIGHBORS[25838],C10orf112->chr10:19492779-20079330:+,PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.87	0.1763	FALSE	73	74	3	10	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	9	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.122	0.0813	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2033	FALSE	407	2205	196	549	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.122	0.0271	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1491	FALSE	462	80	0	856	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	9	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.71	1	0.122	0.0136	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.1356	FALSE	292	1546	117	613	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	9	1	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	4	1	0.71	0.122	0.0136	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.1356	FALSE	49	120	16	70	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	9	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.122	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.122	TRUE	46	1352	75	139	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	9	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.122	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.122	TRUE	0	0	0	434	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	7	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	6	1	0.67	0.0949	0.0678	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.1627	FALSE	515	4851	409	746	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-40--IGKJ4	7	0	IGKV2-40	1300	chr2:89629887:-	IGKJ4	4319	chr2:89160430:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0949	0	GTEx_FI:{Thyroid=[count:2=pct:1.1],Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3]},HGNC_GENEFAM,IGKV2-40->chr2:89629873-89630186:-,immunoglobulin_kappa_variable_2-40,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0949	FALSE	7	34	0	4	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	7	0	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0949	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0949	FALSE	63	17	1	58	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	6	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0813	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0813	FALSE	272	151	14	158	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANPEP--MT-ND4L	5	1	ANPEP	16060	chr15:90328379:-	MT-ND4L	19321	chrM:10471:+	INCL_NON_REF_SPLICE	YES	442	0	0.01	1	0.0678	0.0136	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0814	FALSE	0	1	0	16	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	6	0.89	0.57	0.0407	0.0678	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	0.89	0.1085	FALSE	467	2173	244	435	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0542	FALSE	183	104	9	328	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0542	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0542	FALSE	63	17	1	58	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0407	FALSE	183	104	9	328	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0407	FALSE	183	104	9	328	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0407	FALSE	63	17	1	58	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	24	0	0.17	1	0.0271	0.0407	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.0678	FALSE	164	806	69	479	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0136	0.0813	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0949	FALSE	192	492	57	212	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C10orf112--PLXDC2	2	1	C10orf112	29174	chr10:19981483:+	PLXDC2	37923	chr10:20290704:+	ONLY_REF_SPLICE	YES	13	17	0.19	0.15	0.0271	0.0136	NEIGHBORS[25838],C10orf112->chr10:19492779-20079330:+,PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.19	0.0407	FALSE	13	21	4	3	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2152M20.2--GOLPH3	2	1	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	17	1	0.15	0.0271	0.0136	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.0407	TRUE	10	26	2	24	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--GNAS	2	1	PROSC	2996	chr8:37623873:+	GNAS	28232	chr20:57470667:+	ONLY_REF_SPLICE	YES	168	416	0.02	0.01	0.0271	0.0136	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0407	FALSE	0	3	1	3	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP13-188A5.1--KLF8	2	1	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0271	0.0136	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.0407	TRUE	10	78	6	20	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BSG--GZMM	2	0	BSG	2405	chr19:572701:+	GZMM	14559	chr19:547280:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[21378],BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,GZMM->chr19:544034-549919:+,granzyme_M	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	0	0	5	0	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--RP11-453F18__B.1	2	0	CPSF6	11046	chr12:69656342:+	RP11-453F18__B.1	24979	chrX:130928494:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,RP11-453F18__B.1->chrX:130836678-130964671:-	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	0	0	2	0	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	23926	chr13:114164553:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	4	0	1	4	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MRPL3--CCDC14	2	0	MRPL3	8064	chr3:131206524:-	CCDC14	20258	chr3:123675642:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3,CCDC14->chr3:123616152-123680564:-,coiled-coil_domain_containing_14	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF168--TFRC	2	0	RNF168	1896	chr3:196229744:-	TFRC	15707	chr3:195803993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	RNF168->chr3:196195654-196230639:-,ring_finger_protein_168,TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	2	0	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0271	FALSE	141	264	50	91	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL8--PHF14	1	1	IL8	1217	chr4:74606439:+	PHF14	31727	chr7:11150977:+	ONLY_REF_SPLICE	NO	88	49	0.02	0.04	0.0136	0.0136	IL8->chr4:74606223-74609433:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0272	TRUE	0	0	0	1	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.15	1	0.0136	0.0136	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.0272	FALSE	125	705	46	456	0	FALSE	ACH-000166
KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHRF1--TSPAN4	1	1	PHRF1	1107	chr11:576592:+	TSPAN4	23727	chr11:847201:+	ONLY_REF_SPLICE	YES	27	92	0.07	0.02	0.0136	0.0136	PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,TSPAN4->chr11:842808-867116:+,tetraspanin_4	KASUMI6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.07	0.0272	TRUE	0	0	0	1	0	FALSE	ACH-000166
ECC10_STOMACH	NKD1--ADCY7	121	33	NKD1	2226	chr16:50583466:+	ADCY7	21506	chr16:50321823:+	ONLY_REF_SPLICE	YES	1225	1	0.11	0.99	1.2228	0.3335	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	ECC10_STOMACH	0.11	0.99	1.5563	TRUE	0	1	0	4	1	TRUE	ACH-000560
ECC10_STOMACH	TIMM23B--LINC00843	98	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9904	0.192	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ECC10_STOMACH	1	1	1.1824	TRUE	508	994	45	981	0	FALSE	ACH-000560
ECC10_STOMACH	MT-TA--MT-TN	83	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8388	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECC10_STOMACH	1	1	0.8388	FALSE	369	2501	205	193	0	FALSE	ACH-000560
ECC10_STOMACH	RP11-123O10.4--GRIP1	57	14	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	3	1	0.96	0.576	0.1415	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ECC10_STOMACH	0.96	1	0.7175	FALSE	416	2512	207	587	0	FALSE	ACH-000560
ECC10_STOMACH	TIMM23--RP11-464F9.1	60	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	71	2	0.46	0.97	0.6063	0.0101	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ECC10_STOMACH	0.46	0.97	0.6164	TRUE	519	3926	326	965	0	FALSE	ACH-000560
ECC10_STOMACH	RP11-680G10.1--GSE1	55	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	78	1	0.44	0.5558	0.0707	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ECC10_STOMACH	0.44	1	0.6265	TRUE	465	1949	224	605	0	FALSE	ACH-000560
ECC10_STOMACH	SLC12A2--AP3S1	51	14	SLC12A2	1945	chr5:127420402:+	AP3S1	41125	chr5:115202367:+	ONLY_REF_SPLICE	YES	4	63	0.94	0.51	0.5154	0.1415	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+	ECC10_STOMACH	0.51	0.94	0.6569	TRUE	0	0	0	1	0	TRUE	ACH-000560
ECC10_STOMACH	MT-ND6--MT-TE	46	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4649	0.0303	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC10_STOMACH	1	1	0.4952	FALSE	499	1288	110	792	0	FALSE	ACH-000560
ECC10_STOMACH	ZNF654--HMGB2	44	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4447	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	ECC10_STOMACH	1	1	0.4447	TRUE	0	0	0	518	0	FALSE	ACH-000560
ECC10_STOMACH	MT-TA--MT-TC	40	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4042	0.0101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ECC10_STOMACH	1	1	0.4143	FALSE	462	80	0	856	0	FALSE	ACH-000560
ECC10_STOMACH	RP11-475J5.8--MT-ATP6	40	0	RP11-475J5.8	1074	chr5:99387547:-	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4042	0	RP11-475J5.8->chr5:99386837-99387620:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	ECC10_STOMACH	1	1	0.4042	FALSE	0	0	0	4	0	FALSE	ACH-000560
ECC10_STOMACH	HSP90AB1--MT-RNR2	38	4	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2144	0	0.02	1	0.384	0.0404	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ECC10_STOMACH	0.02	1	0.4244	FALSE	13	9	0	364	0	FALSE	ACH-000560
ECC10_STOMACH	RP11-680G10.1--GSE1	36	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	14	1	0.77	0.3638	0.1011	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ECC10_STOMACH	0.77	1	0.4649	TRUE	458	1351	185	561	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND6--MT-TE	34	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3436	0.0606	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC10_STOMACH	1	1	0.4042	FALSE	499	1288	110	792	0	FALSE	ACH-000560
ECC10_STOMACH	HSP90AB1--MT-RNR2	33	4	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2165	0	0.02	1	0.3335	0.0404	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ECC10_STOMACH	0.02	1	0.3739	FALSE	13	9	0	364	0	FALSE	ACH-000560
ECC10_STOMACH	CWC27--GRIA4	26	5	CWC27	16634	chr5:64181373:+	GRIA4	32265	chr11:105732750:+	ONLY_REF_SPLICE	YES	25	0	0.55	1	0.2627	0.0505	CWC27->CWC27_spliceosome_associated_protein_homolog,chr5:64064757-64314590:+,GRIA4->chr11:105480721-105852819:+,glutamate_ionotropic_receptor_AMPA_type_subunit_4	ECC10_STOMACH	0.55	1	0.3132	TRUE	0	0	0	1	0	TRUE	ACH-000560
ECC10_STOMACH	APC--YTHDC2	20	15	APC	1385	chr5:112043579:+	YTHDC2	50697	chr5:112896777:+	ONLY_REF_SPLICE	YES	4	9	0.9	0.8	0.2021	0.1516	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,YTHDC2->YTH_domain_containing_2,chr5:112849380-112930982:+	ECC10_STOMACH	0.8	0.9	0.3537	TRUE	0	0	0	1	0	TRUE	ACH-000560
ECC10_STOMACH	MT-TA--MT-TN	9	52	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.091	0.5255	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECC10_STOMACH	1	1	0.6165	FALSE	369	2501	205	193	0	FALSE	ACH-000560
ECC10_STOMACH	MT-TA--MT-TN	12	36	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1213	0.3638	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECC10_STOMACH	1	1	0.4851	FALSE	369	2501	205	193	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	18	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11423	34	0	0.38	0.1819	0.0303	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.38	0.2122	FALSE	231	205	14	283	0	FALSE	ACH-000560
ECC10_STOMACH	CHGB--GNAS	17	4	CHGB	7201	chr20:5903565:+	GNAS	34272	chr20:57478784:+	INCL_NON_REF_SPLICE	YES	3377	3896	0.01	0.01	0.1718	0.0404	CHGB->chr20:5892076-5906007:+,chromogranin_B,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	ECC10_STOMACH	0.01	0.01	0.2122	TRUE	0	0	0	1	0	FALSE	ACH-000560
ECC10_STOMACH	NPM1P24--SET	18	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1819	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ECC10_STOMACH	1	1	0.1819	TRUE	0	0	0	434	0	FALSE	ACH-000560
ECC10_STOMACH	MT-TA--MT-TN	15	9	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1516	0.091	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECC10_STOMACH	1	1	0.2426	FALSE	369	2501	205	193	0	FALSE	ACH-000560
ECC10_STOMACH	MT-TA--MT-TN	10	28	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1011	0.283	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECC10_STOMACH	1	1	0.3841	FALSE	369	2501	205	193	0	FALSE	ACH-000560
ECC10_STOMACH	MT-TA--MT-TN	12	18	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1213	0.1819	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECC10_STOMACH	1	1	0.3032	FALSE	369	2501	205	193	0	FALSE	ACH-000560
ECC10_STOMACH	MT-TA--MT-TN	16	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1617	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECC10_STOMACH	1	1	0.1617	FALSE	369	2501	205	193	0	FALSE	ACH-000560
ECC10_STOMACH	NHP2L1--XRCC6	14	8	NHP2L1	6637	chr22:42076248:-	XRCC6	21270	chr22:42052907:+	ONLY_REF_SPLICE	YES	218	268	0.09	0.08	0.1415	0.0808	LOCAL_INVERSION:-:+:[9890],NHP2L1->chr22:42069934-42086508:-,XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+	ECC10_STOMACH	0.08	0.09	0.2223	TRUE	0	0	0	1	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND6--MT-TE	14	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.1415	0.0707	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC10_STOMACH	0.81	1	0.2122	FALSE	499	1288	110	792	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	14	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1415	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	1	1	0.1415	FALSE	230	198	14	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	13	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1314	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	1	1	0.1314	FALSE	230	193	14	283	0	FALSE	ACH-000560
ECC10_STOMACH	NKD1--ADCY7	3	35	NKD1	2226	chr16:50583466:+	ADCY7	21476	chr16:50321793:+	ONLY_REF_SPLICE	YES	1225	0	0.03	1	0.0303	0.3537	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	ECC10_STOMACH	0.03	1	0.384	TRUE	0	1	0	4	1	FALSE	ACH-000560
ECC10_STOMACH	MT-TA--MT-TN	4	30	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0.3032	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECC10_STOMACH	1	1	0.3436	FALSE	369	2501	205	193	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND6--MT-TE	7	14	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.0707	0.1415	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC10_STOMACH	0.81	1	0.2122	FALSE	499	1288	110	792	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	10	1	MT-ND4	1152	chrM:10911:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	8170	24	0	0.31	0.1011	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.31	0.1112	FALSE	230	193	14	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-TA--MT-TN	10	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1011	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECC10_STOMACH	1	1	0.1011	FALSE	369	2501	205	193	0	FALSE	ACH-000560
ECC10_STOMACH	RP11-120D5.1--MID1	8	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	25	0.77	0.29	0.0808	0.0202	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	ECC10_STOMACH	0.29	0.77	0.101	FALSE	16	356	14	466	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ATP6--MT-CO1	8	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	7786	17169	0	0	0.0808	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC10_STOMACH	0	0	0.0909	FALSE	183	104	9	328	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ATP6--MT-CO1	8	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	7882	17539	0	0	0.0808	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC10_STOMACH	0	0	0.0909	FALSE	183	104	9	328	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	7	4	MT-ND4	1528	chrM:11287:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	NO	14495	5	0	0.69	0.0707	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.69	0.1111	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-TA--MT-TN	8	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0808	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECC10_STOMACH	1	1	0.0808	FALSE	369	2501	205	193	0	FALSE	ACH-000560
ECC10_STOMACH	PCAT1--RP11-382A18.2	8	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0808	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	ECC10_STOMACH	1	1	0.0808	TRUE	4	84	1	46	0	FALSE	ACH-000560
ECC10_STOMACH	MT-TA--MT-TC	7	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0707	0.0101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	ECC10_STOMACH	1	1	0.0808	FALSE	462	80	0	856	0	FALSE	ACH-000560
ECC10_STOMACH	MT-TL1--MT-RNR2	7	1	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0707	0.0101	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ECC10_STOMACH	1	1	0.0808	FALSE	7	521	16	32	0	FALSE	ACH-000560
ECC10_STOMACH	NKD1--ADCY7	7	1	NKD1	2226	chr16:50583466:+	ADCY7	26052	chr16:50326587:+	ONLY_REF_SPLICE	YES	1225	47	0.01	0.15	0.0707	0.0101	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	ECC10_STOMACH	0.01	0.15	0.0808	FALSE	0	1	0	3	1	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	7	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0707	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	1	1	0.0707	FALSE	230	193	14	283	0	FALSE	ACH-000560
ECC10_STOMACH	RPS11--DEFA5	6	4	RPS11	2589	chr19:50001210:+	DEFA5	7117	chr8:6914205:-	INCL_NON_REF_SPLICE	YES	2830	0	0	1	0.0606	0.0404	RPS11->chr19:49999622-50002946:+,ribosomal_protein_S11,DEFA5->chr8:6912831-6914256:-,defensin_alpha_5	ECC10_STOMACH	0	1	0.101	TRUE	0	0	0	1	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ATP6--MT-CO1	6	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9692	17539	0	0	0.0606	0.0303	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC10_STOMACH	0	0	0.0909	FALSE	183	104	9	328	0	FALSE	ACH-000560
ECC10_STOMACH	WDR33--SAP130	5	5	WDR33	4479	chr2:128525763:-	SAP130	51360	chr2:128707982:-	ONLY_REF_SPLICE	YES	87	35	0.1	0.22	0.0505	0.0505	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	ECC10_STOMACH	0.1	0.22	0.101	TRUE	0	0	0	1	0	TRUE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	5	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11554	34	0	0.21	0.0505	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.21	0.0909	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-TA--MT-TN	6	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECC10_STOMACH	1	1	0.0606	FALSE	369	2501	205	193	0	FALSE	ACH-000560
ECC10_STOMACH	NPM1P24--SET	6	0	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ECC10_STOMACH	1	1	0.0606	TRUE	0	0	0	434	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	5	3	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	11775	1333	0	0.01	0.0505	0.0303	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.01	0.0808	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	5	3	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13945	103	0	0.07	0.0505	0.0303	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.07	0.0808	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	4	7	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	11758	0	0	1	0.0404	0.0707	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	1	0.1111	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	CALM3--MT-ND4L	5	2	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	690	0	0.01	1	0.0505	0.0202	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ECC10_STOMACH	0.01	1	0.0707	FALSE	1	1	0	107	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ATP6--MT-CO1	3	10	MT-ATP6	1462	chrM:8988:+	MT-CO1	5224	chrM:6446:+	INCL_NON_REF_SPLICE	YES	7060	15943	0	0	0.0303	0.1011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC10_STOMACH	0	0	0.1314	FALSE	183	104	9	328	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ATP6--MT-CO1	3	10	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	NO	4917	16063	0	0	0.0303	0.1011	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC10_STOMACH	0	0	0.1314	FALSE	183	104	9	328	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	4	5	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	11653	0	0	1	0.0404	0.0505	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	1	0.0909	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	9	MT-ND4	2283	chrM:12042:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	21	0	0.36	1	0.0303	0.091	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0.36	1	0.1213	FALSE	213	207	15	279	0	FALSE	ACH-000560
ECC10_STOMACH	APC--YTHDC2	1	16	APC	2961	chr5:112074157:+	YTHDC2	50697	chr5:112896777:+	ONLY_REF_SPLICE	NO	4	9	0.81	0.65	0.0101	0.1617	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,YTHDC2->YTH_domain_containing_2,chr5:112849380-112930982:+	ECC10_STOMACH	0.65	0.81	0.1718	TRUE	0	0	0	1	0	TRUE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	4	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11388	103	0	0.07	0.0404	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.07	0.0808	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	4	4	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	12582	6	0	0.57	0.0404	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.57	0.0808	FALSE	231	205	14	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	4	4	MT-ND4	1741	chrM:11500:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	11238	6	0	0.57	0.0404	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.57	0.0808	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-TA--MT-TN	5	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	ECC10_STOMACH	1	1	0.0505	FALSE	369	2501	205	193	0	FALSE	ACH-000560
ECC10_STOMACH	NPM1P24--SET	5	0	NPM1P24	1533	chr10:74677760:-	SET	12307	chr9:131456202:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ECC10_STOMACH	1	1	0.0505	TRUE	0	0	0	434	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ATP6--MT-CO1	4	3	MT-ATP6	1153	chrM:8679:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	9203	15080	0	0	0.0404	0.0303	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC10_STOMACH	0	0	0.0707	FALSE	183	104	9	328	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	4	3	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	12281	722	0	0.01	0.0404	0.0303	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.01	0.0707	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	4	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	YES	11554	776	0	0.01	0.0404	0.0303	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.01	0.0707	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	GDAP1--RP11-758M4.1	4	2	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	112	0	0.05	1	0.0404	0.0202	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	ECC10_STOMACH	0.05	1	0.0606	TRUE	7	28	0	43	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	6	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4367	103	0	0.08	0.0303	0.0606	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.08	0.0909	FALSE	218	210	16	281	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	4	2	MT-ND4	1244	chrM:11003:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	10032	686	0	0.01	0.0404	0.0202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.01	0.0606	FALSE	231	204	14	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	6	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11274	103	0	0.08	0.0303	0.0606	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.08	0.0909	FALSE	231	215	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	HSP90AB1--MT-RNR2	3	5	HSP90AB1	7270	chr6:44221093:+	MT-RNR2	10834	chrM:1707:+	INCL_NON_REF_SPLICE	YES	2134	0	0	1	0.0303	0.0505	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	ECC10_STOMACH	0	1	0.0808	FALSE	13	9	0	364	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ATP6--MT-CO1	4	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	7404	15879	0	0	0.0404	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC10_STOMACH	0	0	0.0505	FALSE	183	104	9	328	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	4	1	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	6176	0	0	1	0.0404	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	1	0.0505	FALSE	230	193	14	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	5	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	11648	0	0	1	0.0303	0.0505	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	1	0.0808	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	4	MT-ND4	1314	chrM:11073:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	13068	0	0	1	0.0303	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	1	0.0707	FALSE	231	205	14	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	4	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	13177	0	0	1	0.0303	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	1	0.0707	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	4	MT-ND4	1294	chrM:11053:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	12126	24	0	0.23	0.0303	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.23	0.0707	FALSE	231	205	14	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	4	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	12880	0	0	1	0.0303	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	1	0.0707	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	4	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	6318	484	0	0.01	0.0303	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.01	0.0707	FALSE	231	215	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	4	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	12601	0	0	1	0.0303	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	1	0.0707	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	4	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	12653	0	0	1	0.0303	0.0404	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	1	0.0707	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ECC10_STOMACH	1	1	0.0404	TRUE	0	0	0	434	0	FALSE	ACH-000560
ECC10_STOMACH	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	ECC10_STOMACH	1	1	0.0404	TRUE	0	0	0	434	0	FALSE	ACH-000560
ECC10_STOMACH	RERE--MT-ND4	4	0	RERE	34132	chr1:8416251:-	MT-ND4	41393	chrM:11226:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0404	0	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	ECC10_STOMACH	1	1	0.0404	FALSE	1	0	0	5	0	FALSE	ACH-000560
ECC10_STOMACH	RP11-123O10.4--GRIP1	2	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	5	1	0.67	0.0202	0.0808	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ECC10_STOMACH	0.67	1	0.101	FALSE	93	270	15	244	0	FALSE	ACH-000560
ECC10_STOMACH	TADA2B--SORCS2	4	0	TADA2B	2647	chr4:7045576:+	SORCS2	14461	chr4:7398015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0404	0	GTEx_FI:{Brain=[count:74=pct:11.2],Blood_Vessel=[count:12=pct:3.3],Nerve=[count:8=pct:4.7],Muscle=[count:6=pct:2.6],Pancreas=[count:5=pct:2.8],Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:3=pct:5.7],Breast=[count:2=pct:1.8],Skin=[count:2=pct:0.6],Thyroid=[count:2=pct:1.1],Colon=[count:2=pct:1.0],Uterus=[count:2=pct:4.7],Testis=[count:1=pct:1.0],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},TADA2B->chr4:7043626-7059679:+,transcriptional_adaptor_2B,SORCS2->chr4:7194265-7744554:+,sortilin_related_VPS10_domain_containing_receptor_2	ECC10_STOMACH	1	1	0.0404	TRUE	95	84	3	6	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	3	MT-ND4	1531	chrM:11290:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14466	34	0	0.15	0.0303	0.0303	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.15	0.0606	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	3	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	14414	215	0	0.03	0.0303	0.0303	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.03	0.0606	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	3	MT-ND4	1510	chrM:11269:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13119	34	0	0.15	0.0303	0.0303	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0.15	0.0606	FALSE	231	217	16	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	3	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	10232	0	0	1	0.0303	0.0303	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	1	0.0606	FALSE	231	204	14	283	0	FALSE	ACH-000560
ECC10_STOMACH	RP11-120D5.1--MID1	3	3	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	3	25	0.67	0.19	0.0303	0.0303	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	ECC10_STOMACH	0.19	0.67	0.0606	FALSE	0	9	0	55	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ATP6--MT-CO1	3	2	MT-ATP6	1133	chrM:8659:+	MT-CO1	5176	chrM:6398:+	INCL_NON_REF_SPLICE	YES	8107	15604	0	0	0.0303	0.0202	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC10_STOMACH	0	0	0.0505	FALSE	183	104	9	328	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	13111	1333	0	0	0.0303	0.0202	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	0	0.0505	FALSE	231	205	14	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ATP6--MT-CO1	3	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7929	17644	0	0	0.0303	0.0101	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	ECC10_STOMACH	0	0	0.0404	FALSE	183	104	9	328	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	1	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	8145	0	0	1	0.0303	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	0	1	0.0404	FALSE	230	193	14	283	0	FALSE	ACH-000560
ECC10_STOMACH	TYMS--AMACR	3	1	TYMS	4286	chr18:662320:+	AMACR	14534	chr5:34006004:-	ONLY_REF_SPLICE	YES	149	639	0.03	0.01	0.0303	0.0101	{Klijn_CCL:Lung=1},TYMS->chr18:657604-673578:+,thymidylate_synthetase,AMACR->alpha-methylacyl-CoA_racemase,chr5:33986283-34008220:-	ECC10_STOMACH	0.01	0.03	0.0404	FALSE	0	1	0	1	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	ECC10_STOMACH	1	1	0.0303	FALSE	230	198	14	283	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1046	chrM:14628:-	MT-TE	4575	chrM:14693:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC10_STOMACH	1	1	0.0303	FALSE	499	1288	110	792	0	FALSE	ACH-000560
ECC10_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0303	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	ECC10_STOMACH	1	1	0.0303	FALSE	499	1288	110	792	0	FALSE	ACH-000560
ECC10_STOMACH	ZFYVE21--KLC1	3	0	ZFYVE21	1250	chr14:104182316:+	KLC1	34861	chr14:104166992:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0303	0	GTEx_FI:{Esophagus=[count:4=pct:1.0],Brain=[count:3=pct:0.5],Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Colon=[count:1=pct:0.5],Pituitary=[count:1=pct:1.9],Breast=[count:1=pct:0.9]},GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_REARRANGEMENT:+:[14179],ZFYVE21->chr14:104182067-104200005:+,zinc_finger_FYVE-type_containing_21,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	ECC10_STOMACH	1	1	0.0303	TRUE	10	10	1	10	0	FALSE	ACH-000560
ECC10_STOMACH	RP11-120D5.1--MID1	2	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	25	0.8	0.14	0.0202	0.0202	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	ECC10_STOMACH	0.14	0.8	0.0404	FALSE	0	48	1	163	0	FALSE	ACH-000560
ECC10_STOMACH	APC--YTHDC2	1	5	APC	1385	chr5:112043579:+	YTHDC2	51814	chr5:112899070:+	ONLY_REF_SPLICE	YES	4	11	0.6	0.35	0.0101	0.0505	APC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,adenomatous_polyposis_coli,chr5:112043195-112181936:+,YTHDC2->YTH_domain_containing_2,chr5:112849380-112930982:+	ECC10_STOMACH	0.35	0.6	0.0606	TRUE	0	0	0	1	0	TRUE	ACH-000560
ECC10_STOMACH	NKD1--ADCY7	2	1	NKD1	3293	chr16:50642271:+	ADCY7	33512	chr16:50339414:+	ONLY_REF_SPLICE	YES	1199	42	0	0.07	0.0202	0.0101	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	ECC10_STOMACH	0	0.07	0.0303	FALSE	0	0	0	1	0	FALSE	ACH-000560
ECC10_STOMACH	AC131097.3--ZMYND11	2	0	AC131097.3	5844	chr2:242908198:+	ZMYND11	12600	chr10:225934:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	AC131097.3->chr2:242823514-243020873:+,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	ECC10_STOMACH	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000560
ECC10_STOMACH	CTD-2281E23.2--DLGAP2	2	0	CTD-2281E23.2	3418	chr8:1208883:+	DLGAP2	8510	chr8:1449532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_FI:{Testis=[count:34=pct:32.4],Brain=[count:24=pct:3.6],Pituitary=[count:4=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Thyroid=[count:2=pct:1.1]},CTD-2281E23.2->chr8:1054882-1212580:+,DLGAP2->chr8:1449532-1656642:+,discs_large_homolog_associated_protein_2	ECC10_STOMACH	1	1	0.0202	TRUE	49	61	1	13	0	FALSE	ACH-000560
ECC10_STOMACH	PCMTD1--PCNXL4	2	0	PCMTD1	7395	chr8:52758221:-	PCNXL4	27408	chr14:60582437:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	GTEx_v2:{count=1;pct=0.01%;dist=Uterus=1},PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,PCNXL4->chr14:60558629-60635851:+	ECC10_STOMACH	1	1	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000560
ECC10_STOMACH	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	23013	chrX:10491227:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0202	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	ECC10_STOMACH	1	1	0.0202	FALSE	0	3	0	6	0	FALSE	ACH-000560
ECC10_STOMACH	RP11-680G10.1--GSE1	1	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	134	1	0.03	0.0101	0.0303	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ECC10_STOMACH	0.03	1	0.0404	TRUE	64	13	3	59	0	FALSE	ACH-000560
ECC10_STOMACH	GDAP1--RP11-758M4.1	1	1	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	21480	chr8:75664676:+	ONLY_REF_SPLICE	YES	112	5	0.02	0.29	0.0101	0.0101	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	ECC10_STOMACH	0.02	0.29	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000560
ECC10_STOMACH	NKD1--ADCY7	1	1	NKD1	2226	chr16:50583466:+	ADCY7	35957	chr16:50342238:+	ONLY_REF_SPLICE	YES	1225	64	0	0.03	0.0101	0.0101	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	ECC10_STOMACH	0	0.03	0.0202	FALSE	0	0	0	2	0	FALSE	ACH-000560
ECC10_STOMACH	NKD1--ADCY7	1	1	NKD1	2226	chr16:50583466:+	ADCY7	23908	chr16:50324368:+	ONLY_REF_SPLICE	NO	1225	31	0	0.06	0.0101	0.0101	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	ECC10_STOMACH	0	0.06	0.0202	FALSE	0	0	0	3	0	FALSE	ACH-000560
ECC10_STOMACH	NKD1--ADCY7	1	1	NKD1	5460	chr16:50655619:+	ADCY7	37178	chr16:50343459:+	ONLY_REF_SPLICE	YES	1082	51	0	0.04	0.0101	0.0101	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	ECC10_STOMACH	0	0.04	0.0202	FALSE	0	0	0	1	0	FALSE	ACH-000560
ECC10_STOMACH	STX18-AS1--MSX1	1	1	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	1	896	0.67	0	0.0101	0.0101	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	ECC10_STOMACH	0	0.67	0.0202	FALSE	37	101	7	40	0	FALSE	ACH-000560
EFO21_OVARY	CANX--HMGB3P22	342	87	CANX	7200	chr5:179132853:+	HMGB3P22	26412	chr5:179121307:+	ONLY_REF_SPLICE	YES	1685	10	0.2	0.98	3.0512	0.7762	NEIGHBORS_OVERLAP:+:+:[15749],CANX->calnexin,chr5:179105629-179157926:+,HMGB3P22->chr5:179106033-179121782:+,high_mobility_group_box_3_pseudogene_22	EFO21_OVARY	0.2	0.98	3.8274	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	SRSF7--DHX57	180	37	SRSF7	5801	chr2:38973836:-	DHX57	13044	chr2:39095553:-	ONLY_REF_SPLICE	YES	557	1	0.28	1	1.6059	0.3301	LOCAL_REARRANGEMENT:-:[46235],SRSF7->chr2:38970741-38978636:-,serine/arginine-rich_splicing_factor_7,DHX57->DEAH-box_helicase_57,chr2:39024871-39103075:-	EFO21_OVARY	0.28	1	1.936	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	ZNF787--PARP6	155	73	ZNF787	2455	chr19:56614508:-	PARP6	12652	chr15:72560012:-	ONLY_REF_SPLICE	YES	0	37	1	0.86	1.3828	0.6513	ZNF787->chr19:56598732-56632649:-,zinc_finger_protein_787,PARP6->chr15:72533522-72565340:-,poly(ADP-ribose)_polymerase_family_member_6	EFO21_OVARY	0.86	1	2.0341	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	TIMM23B--LINC00843	152	37	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3561	0.3301	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EFO21_OVARY	1	1	1.6862	TRUE	508	994	45	981	0	FALSE	ACH-000308
EFO21_OVARY	SHISA9--U91319.1	103	27	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	69	0	0.65	1	0.9189	0.2409	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	EFO21_OVARY	0.65	1	1.1598	FALSE	4	37	0	19	0	FALSE	ACH-000308
EFO21_OVARY	TIMM23--RP11-464F9.1	84	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	173	10	0.34	0.9	0.7494	0.0535	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EFO21_OVARY	0.34	0.9	0.8029	TRUE	519	3926	326	965	0	FALSE	ACH-000308
EFO21_OVARY	FXR1--SOX2-OT	84	1	FXR1	3131	chr3:180630524:+	SOX2-OT	37796	chr3:180806665:+	ONLY_REF_SPLICE	YES	16	1	0.84	0.99	0.7494	0.0089	NEIGHBORS[7017],FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	EFO21_OVARY	0.84	0.99	0.7583	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	KANSL1--ARL17B	67	20	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	49	22	0.64	0.8	0.5977	0.1784	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	EFO21_OVARY	0.64	0.8	0.7761	TRUE	181	1564	124	196	0	FALSE	ACH-000308
EFO21_OVARY	MT-TA--MT-TC	58	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5175	0.0625	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFO21_OVARY	1	1	0.58	FALSE	462	80	0	856	0	FALSE	ACH-000308
EFO21_OVARY	RALA--CDK13	42	28	RALA	1343	chr7:39663424:+	CDK13	17750	chr7:40037093:+	ONLY_REF_SPLICE	YES	78	48	0.47	0.59	0.3747	0.2498	RALA->Oncogene{Bushman},chr7:39663082-39747723:+,v-ral_simian_leukemia_viral_oncogene_homolog_A_(ras_related),CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13	EFO21_OVARY	0.47	0.59	0.6245	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	BCAS3--RP11-347C12.1	43	13	BCAS3	7454	chr17:58786686:+	RP11-347C12.1	64563	chr16:30243168:-	ONLY_REF_SPLICE	YES	0	303	1	0.16	0.3836	0.116	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,RP11-347C12.1->chr16:30234258-30265831:-	EFO21_OVARY	0.16	1	0.4996	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	NPIPB5--BCAS3	41	20	NPIPB5	24318	chr16:22539294:+	BCAS3	42550	chr17:58824559:+	ONLY_REF_SPLICE	YES	222	0	0.22	1	0.3658	0.1784	NPIPB5->chr16:22490442-22547842:+,nuclear_pore_complex_interacting_protein_family_member_B5,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	EFO21_OVARY	0.22	1	0.5442	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	SLC4A7--NEK10	38	12	SLC4A7	15336	chr3:27459977:-	NEK10	80452	chr3:27161359:-	ONLY_REF_SPLICE	YES	9	0	0.85	1	0.339	0.1071	NEIGHBORS[3263],SLC4A7->chr3:27414214-27525911:-,solute_carrier_family_4_member_7,NEK10->NIMA_related_kinase_10,chr3:27151576-27410951:-	EFO21_OVARY	0.85	1	0.4461	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	CANX--HMGB3P22	15	88	CANX	7200	chr5:179132853:+	HMGB3P22	26366	chr5:179121261:+	INCL_NON_REF_SPLICE	YES	1685	2	0.06	0.98	0.1338	0.7851	NEIGHBORS_OVERLAP:+:+:[15749],CANX->calnexin,chr5:179105629-179157926:+,HMGB3P22->chr5:179106033-179121782:+,high_mobility_group_box_3_pseudogene_22	EFO21_OVARY	0.06	0.98	0.9189	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	LINC00152--AC093616.4	29	13	LINC00152	14196	chr2:87906288:+	AC093616.4	17233	chr2:88000503:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2587	0.116	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	EFO21_OVARY	1	1	0.3747	FALSE	0	0	0	14	0	FALSE	ACH-000308
EFO21_OVARY	PLXDC1--TAF13	32	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2855	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	EFO21_OVARY	1	1	0.2855	TRUE	7	10	0	216	0	FALSE	ACH-000308
EFO21_OVARY	PRSS23--TMEM135	24	8	PRSS23	8412	chr11:86534635:+	TMEM135	31459	chr11:86947680:+	ONLY_REF_SPLICE	YES	2	21	0.94	0.6	0.2141	0.0714	NEIGHBORS[84934],PRSS23->chr11:86502101-86663952:+,protease,_serine_23,TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135	EFO21_OVARY	0.6	0.94	0.2855	FALSE	0	0	0	2	0	FALSE	ACH-000308
EFO21_OVARY	PAWR--RP1-78O14.1	23	10	PAWR	15902	chr12:79986391:-	RP1-78O14.1	30103	chr12:79787705:-	ONLY_REF_SPLICE	YES	341	0	0.09	1	0.2052	0.0892	NEIGHBORS[71583],PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,RP1-78O14.1->chr12:79734985-79897176:-	EFO21_OVARY	0.09	1	0.2944	FALSE	3	4	0	12	0	FALSE	ACH-000308
EFO21_OVARY	MT-ND6--MT-TE	20	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1784	0.0714	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO21_OVARY	1	1	0.2498	FALSE	499	1288	110	792	0	FALSE	ACH-000308
EFO21_OVARY	RP11-123O10.4--GRIP1	21	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1874	0.0268	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	EFO21_OVARY	1	1	0.2142	FALSE	416	2512	207	587	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO1--MT-RNR2	18	8	MT-CO1	1603	chrM:6506:+	MT-RNR2	5550	chrM:1678:+	INCL_NON_REF_SPLICE	YES	13417	0	0	1	0.1606	0.0714	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	1	0.232	FALSE	44	51	6	21	0	FALSE	ACH-000308
EFO21_OVARY	C15orf57--CBX3	16	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	22	23	0.51	0.5	0.1427	0.0625	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EFO21_OVARY	0.5	0.51	0.2052	TRUE	267	562	48	632	0	FALSE	ACH-000308
EFO21_OVARY	MT-ND6--MT-TE	17	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1517	0.0089	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO21_OVARY	1	1	0.1606	FALSE	499	1288	110	792	0	FALSE	ACH-000308
EFO21_OVARY	RP11-680G10.1--GSE1	16	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	30	1	0.4	0.1427	0.0357	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	EFO21_OVARY	0.4	1	0.1784	TRUE	465	1949	224	605	0	FALSE	ACH-000308
EFO21_OVARY	CANX--HMGB3P22	1	54	CANX	7152	chr5:179132805:+	HMGB3P22	26412	chr5:179121307:+	ONLY_REF_SPLICE	NO	1432	10	0.04	0.85	0.0089	0.4818	NEIGHBORS_OVERLAP:+:+:[15749],CANX->calnexin,chr5:179105629-179157926:+,HMGB3P22->chr5:179106033-179121782:+,high_mobility_group_box_3_pseudogene_22	EFO21_OVARY	0.04	0.85	0.4907	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	FXR1--SOX2-OT	14	1	FXR1	3131	chr3:180630524:+	SOX2-OT	36248	chr3:180774485:+	ONLY_REF_SPLICE	YES	16	1	0.48	0.94	0.1249	0.0089	NEIGHBORS[7017],FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	EFO21_OVARY	0.48	0.94	0.1338	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO1--MT-RNR2	10	16	MT-CO1	1653	chrM:6556:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	16087	0	0	1	0.0892	0.1427	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	1	0.2319	FALSE	44	51	6	21	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO1--MT-RNR2	9	18	MT-CO1	2223	chrM:7126:+	MT-RNR2	5562	chrM:1690:+	INCL_NON_REF_SPLICE	YES	11705	0	0	1	0.0803	0.1606	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	1	0.2409	FALSE	44	51	6	21	0	FALSE	ACH-000308
EFO21_OVARY	MT-TA--MT-TC	12	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1071	0.0535	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFO21_OVARY	1	1	0.1606	FALSE	462	80	0	856	0	FALSE	ACH-000308
EFO21_OVARY	MT-ATP6--MT-RNR2	13	1	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	4944	7666	0	0	0.116	0.0089	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	0	0.1249	FALSE	63	17	1	58	0	FALSE	ACH-000308
EFO21_OVARY	MT-ND6--MT-TE	12	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1071	0.0178	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO21_OVARY	1	1	0.1249	FALSE	499	1288	110	792	0	FALSE	ACH-000308
EFO21_OVARY	RP11-680G10.1--GSE1	11	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.71	0.0981	0.0535	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	EFO21_OVARY	0.71	1	0.1516	TRUE	458	1351	185	561	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO1--MT-RNR2	9	13	MT-CO1	1642	chrM:6545:+	MT-RNR2	5587	chrM:1715:+	INCL_NON_REF_SPLICE	YES	15415	0	0	1	0.0803	0.116	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	1	0.1963	FALSE	44	51	6	21	0	FALSE	ACH-000308
EFO21_OVARY	DLG1--SH3D19	10	3	DLG1	28505	chr3:196803457:-	SH3D19	70229	chr4:152043359:-	ONLY_REF_SPLICE	YES	390	10	0.03	0.57	0.0892	0.0268	DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component,SH3D19->SH3_domain_containing_19,chr4:152023903-152246784:-	EFO21_OVARY	0.03	0.57	0.116	TRUE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	SHISA9--U91319.1	3	29	SHISA9	9974	chr16:13297406:+	U91319.1	21484	chr16:13352190:+	ONLY_REF_SPLICE	YES	69	0	0.32	1	0.0268	0.2587	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	EFO21_OVARY	0.32	1	0.2855	FALSE	0	14	0	12	0	FALSE	ACH-000308
EFO21_OVARY	DLG1--SH3D19	9	3	DLG1	29254	chr3:196802708:-	SH3D19	70229	chr4:152043359:-	ONLY_REF_SPLICE	YES	453	10	0.03	0.55	0.0803	0.0268	DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component,SH3D19->SH3_domain_containing_19,chr4:152023903-152246784:-	EFO21_OVARY	0.03	0.55	0.1071	TRUE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO1--MT-RNR2	7	10	MT-CO1	1642	chrM:6545:+	MT-RNR2	6082	chrM:2210:+	INCL_NON_REF_SPLICE	YES	15415	8119	0	0	0.0625	0.0892	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	0	0.1517	FALSE	44	51	6	21	0	FALSE	ACH-000308
EFO21_OVARY	NRIP1--AF127936.7	9	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	6	0	0.65	1	0.0803	0.0178	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	EFO21_OVARY	0.65	1	0.0981	FALSE	292	1546	117	613	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO3--MT-ATP6	5	17	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	4	0.92	0.85	0.0446	0.1517	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO21_OVARY	0.85	0.92	0.1963	FALSE	189	492	56	216	0	FALSE	ACH-000308
EFO21_OVARY	MT-ATP6--MT-CO1	9	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0803	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFO21_OVARY	1	1	0.0803	FALSE	183	104	9	328	0	FALSE	ACH-000308
EFO21_OVARY	AP000525.9--LA16c-60G3.6	8	3	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	14	0	0.44	1	0.0714	0.0268	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	EFO21_OVARY	0.44	1	0.0982	TRUE	0	42	0	133	42	FALSE	ACH-000308
EFO21_OVARY	CDK13--C7orf10	7	7	CDK13	10205	chr7:40087476:+	C7orf10	35525	chr7:40314112:+	ONLY_REF_SPLICE	YES	44	1	0.24	0.93	0.0625	0.0625	NEIGHBORS[37842],CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,C7orf10->chr7:40174575-40900362:+	EFO21_OVARY	0.24	0.93	0.125	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	RP11-96H19.1--RP11-446N19.1	8	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.85	0.92	0.0714	0.0268	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EFO21_OVARY	0.85	0.92	0.0982	FALSE	515	4851	409	746	0	FALSE	ACH-000308
EFO21_OVARY	FAM155A--GNL3L	8	2	FAM155A	2054	chr13:108518030:-	GNL3L	11754	chrX:54565473:+	ONLY_REF_SPLICE	YES	0	75	1	0.12	0.0714	0.0178	FAM155A->chr13:107820883-108519083:-,family_with_sequence_similarity_155_member_A,GNL3L->G_protein_nucleolar_3_like,chrX:54556644-54587504:+	EFO21_OVARY	0.12	1	0.0892	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	MT-CO3--MT-ATP6	4	17	MT-CO3	1220	chrM:9426:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	NO	3	3	0.88	0.88	0.0357	0.1517	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO21_OVARY	0.88	0.88	0.1874	FALSE	189	492	56	216	0	FALSE	ACH-000308
EFO21_OVARY	MT-ND1--MT-RNR2	8	1	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	7	0	0.56	1	0.0714	0.0089	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0.56	1	0.0803	FALSE	114	26	4	85	0	FALSE	ACH-000308
EFO21_OVARY	RP11-96H19.1--RP11-446N19.1	7	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0625	0.0446	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EFO21_OVARY	0.92	1	0.1071	FALSE	467	2173	244	435	0	FALSE	ACH-000308
EFO21_OVARY	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0714	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFO21_OVARY	1	1	0.0714	FALSE	462	80	0	856	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO3--MT-ATP6	3	19	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	3	0	0.88	1	0.0268	0.1695	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO21_OVARY	0.88	1	0.1963	FALSE	189	492	56	216	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO3--MT-ATP6	7	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.77	1	0.0625	0.0268	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO21_OVARY	0.77	1	0.0893	FALSE	189	492	56	216	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO1--MT-RNR2	3	18	MT-CO1	2502	chrM:7405:+	MT-RNR2	5562	chrM:1690:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0.1606	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	1	1	0.1874	FALSE	44	51	6	21	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO3--MT-ATP6	3	18	MT-CO3	1159	chrM:9365:+	MT-ATP6	4932	chrM:8674:+	INCL_NON_REF_SPLICE	YES	3	4	0.88	0.84	0.0268	0.1606	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO21_OVARY	0.84	0.88	0.1874	FALSE	189	492	56	216	0	FALSE	ACH-000308
EFO21_OVARY	MT-ATP6--MT-RNR2	7	1	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	4640	0	0	1	0.0625	0.0089	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	1	0.0714	FALSE	63	17	1	58	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO1--MT-RNR2	4	13	MT-CO1	1642	chrM:6545:+	MT-RNR2	5562	chrM:1690:+	INCL_NON_REF_SPLICE	YES	15415	0	0	1	0.0357	0.116	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	1	0.1517	FALSE	44	51	6	21	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO3--MT-ATP6	3	17	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	4	4	0.83	0.83	0.0268	0.1517	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO21_OVARY	0.83	0.83	0.1785	FALSE	189	492	56	216	0	FALSE	ACH-000308
EFO21_OVARY	C15orf57--CBX3	6	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	22	23	0.31	0.3	0.0535	0.0357	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EFO21_OVARY	0.3	0.31	0.0892	TRUE	267	562	48	632	0	FALSE	ACH-000308
EFO21_OVARY	MT-ATP6--MT-RNR2	7	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	1	1	0.0625	FALSE	63	17	1	58	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO3--MT-ATP6	3	16	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	0	13	1	0.59	0.0268	0.1427	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO21_OVARY	0.59	1	0.1695	FALSE	189	492	56	216	0	FALSE	ACH-000308
EFO21_OVARY	MT-ATP6--MT-RNR2	5	6	MT-ATP6	1516	chrM:9042:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	YES	2696	7921	0	0	0.0446	0.0535	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	0	0.0981	FALSE	63	17	1	58	0	FALSE	ACH-000308
EFO21_OVARY	SLC15A1--DOCK9	6	2	SLC15A1	17732	chr13:99339835:-	DOCK9	64629	chr13:99489863:-	ONLY_REF_SPLICE	YES	11	71	0.42	0.1	0.0535	0.0178	LOCAL_REARRANGEMENT:-:[40833],SLC15A1->chr13:99336055-99404908:-,solute_carrier_family_15_member_1,DOCK9->chr13:99445741-99738879:-,dedicator_of_cytokinesis_9	EFO21_OVARY	0.1	0.42	0.0713	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	FXR1--SOX2-OT	6	1	FXR1	3131	chr3:180630524:+	SOX2-OT	33952	chr3:180721563:+	ONLY_REF_SPLICE	YES	16	0	0.3	1	0.0535	0.0089	NEIGHBORS[7017],FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	EFO21_OVARY	0.3	1	0.0624	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO1--MT-RNR2	5	5	MT-CO1	1536	chrM:6439:+	MT-RNR2	6107	chrM:2235:+	INCL_NON_REF_SPLICE	YES	13357	8252	0	0	0.0446	0.0446	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	0	0.0892	FALSE	44	51	6	21	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO1--MT-RNR2	4	9	MT-CO1	1617	chrM:6520:+	MT-RNR2	5563	chrM:1691:+	INCL_NON_REF_SPLICE	YES	13596	0	0	1	0.0357	0.0803	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	1	0.116	FALSE	44	51	6	21	0	FALSE	ACH-000308
EFO21_OVARY	MT-ATP6--MT-CO1	6	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0535	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFO21_OVARY	1	1	0.0535	FALSE	183	104	9	328	0	FALSE	ACH-000308
EFO21_OVARY	MT-ATP6--MT-RNR2	6	0	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0535	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	1	1	0.0535	FALSE	63	17	1	58	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO1--MT-RNR2	3	12	MT-CO1	1699	chrM:6602:+	MT-RNR2	6090	chrM:2218:+	INCL_NON_REF_SPLICE	YES	15752	8599	0	0	0.0268	0.1071	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	0	0.1339	FALSE	44	51	6	21	0	FALSE	ACH-000308
EFO21_OVARY	RP11-96H19.1--RP11-446N19.1	5	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0446	0.0357	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EFO21_OVARY	0.82	1	0.0803	FALSE	407	2205	196	549	0	FALSE	ACH-000308
EFO21_OVARY	TULP4--TMEM181	4	8	TULP4	2609	chr6:158735300:+	TMEM181	29554	chr6:158994452:+	ONLY_REF_SPLICE	YES	5	2	0.71	0.86	0.0357	0.0714	NEIGHBORS[24608],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181	EFO21_OVARY	0.71	0.86	0.1071	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	MT-ND6--MT-TE	3	11	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0.0981	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO21_OVARY	1	1	0.1249	FALSE	499	1288	110	792	0	FALSE	ACH-000308
EFO21_OVARY	SRSF7--DHX57	5	3	SRSF7	5801	chr2:38973836:-	DHX57	15347	chr2:39090661:-	ONLY_REF_SPLICE	YES	557	5	0.01	0.62	0.0446	0.0268	LOCAL_REARRANGEMENT:-:[46235],SRSF7->chr2:38970741-38978636:-,serine/arginine-rich_splicing_factor_7,DHX57->DEAH-box_helicase_57,chr2:39024871-39103075:-	EFO21_OVARY	0.01	0.62	0.0714	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	LINC00152--AC093616.4	5	2	LINC00152	14196	chr2:87906288:+	AC093616.4	20662	chr2:88007281:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.58	0.0446	0.0178	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	EFO21_OVARY	0.58	1	0.0624	FALSE	0	0	0	4	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO1--MT-RNR2	3	10	MT-CO1	1782	chrM:6685:+	MT-RNR2	6127	chrM:2255:+	INCL_NON_REF_SPLICE	YES	16290	8161	0	0	0.0268	0.0892	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	0	0.116	FALSE	44	51	6	21	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO1--MT-RNR2	3	10	MT-CO1	1762	chrM:6665:+	MT-RNR2	6105	chrM:2233:+	INCL_NON_REF_SPLICE	YES	15903	8278	0	0	0.0268	0.0892	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	0	0.116	FALSE	44	51	6	21	0	FALSE	ACH-000308
EFO21_OVARY	MT-ND1--MT-RNR2	5	1	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	7	0	0.46	1	0.0446	0.0089	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0.46	1	0.0535	FALSE	114	26	4	85	0	FALSE	ACH-000308
EFO21_OVARY	MT-ND1--MT-RNR2	5	1	MT-ND1	1246	chrM:3552:+	MT-RNR2	5019	chrM:1733:+	INCL_NON_REF_SPLICE	YES	5	0	0.55	1	0.0446	0.0089	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0.55	1	0.0535	FALSE	114	26	4	85	0	FALSE	ACH-000308
EFO21_OVARY	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	1	1	0.0446	FALSE	63	17	1	58	0	FALSE	ACH-000308
EFO21_OVARY	MT-ND6--MT-TE	5	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO21_OVARY	1	1	0.0446	FALSE	499	1288	110	792	0	FALSE	ACH-000308
EFO21_OVARY	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO21_OVARY	1	1	0.0446	FALSE	499	1288	110	792	0	FALSE	ACH-000308
EFO21_OVARY	MT-TA--MT-TC	3	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0.0714	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EFO21_OVARY	1	1	0.0982	FALSE	462	80	0	856	0	FALSE	ACH-000308
EFO21_OVARY	ST7--MET	5	0	ST7	1454	chr7:116593745:+	MET	44516	chr7:116371722:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1],ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,MET->ArcherDX_panel,FoundationOne_panel,MET_proto-oncogene,_receptor_tyrosine_kinase,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:116312444-116438440:+	EFO21_OVARY	1	1	0.0446	TRUE	0	1	0	3	0	TRUE	ACH-000308
EFO21_OVARY	CCAT1--CASC8	4	3	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	64	0	0.1	1	0.0357	0.0268	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	EFO21_OVARY	0.1	1	0.0625	TRUE	0	26	0	18	24	TRUE	ACH-000308
EFO21_OVARY	KANSL1--ARL17B	4	3	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	49	22	0.12	0.24	0.0357	0.0268	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	EFO21_OVARY	0.12	0.24	0.0625	TRUE	105	90	7	93	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO3--MT-ATP6	4	3	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.0357	0.0268	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	EFO21_OVARY	0.7	1	0.0625	FALSE	189	492	56	216	0	FALSE	ACH-000308
EFO21_OVARY	MT-ATP6--MT-RNR2	3	6	MT-ATP6	1657	chrM:9183:+	MT-RNR2	5252	chrM:2241:+	INCL_NON_REF_SPLICE	YES	0	8167	1	0	0.0268	0.0535	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	1	0.0803	FALSE	63	17	1	58	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO1--MT-RNR2	3	6	MT-CO1	1635	chrM:6538:+	MT-RNR2	6251	chrM:2379:+	INCL_NON_REF_SPLICE	YES	15058	10244	0	0	0.0268	0.0535	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	0	0.0803	FALSE	44	51	6	21	0	FALSE	ACH-000308
EFO21_OVARY	NBAS--XDH	4	2	NBAS	44381	chr2:15432661:-	XDH	64003	chr2:31628830:-	ONLY_REF_SPLICE	YES	4	0	0.6	1	0.0357	0.0178	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,XDH->Oncogene{Bushman},chr2:31557187-31637581:-,xanthine_dehydrogenase	EFO21_OVARY	0.6	1	0.0535	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0.0535	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EFO21_OVARY	1	1	0.0803	FALSE	192	492	57	212	0	FALSE	ACH-000308
EFO21_OVARY	BCAS3--RP11-347C12.1	1	13	BCAS3	7681	chr17:58786913:+	RP11-347C12.1	64563	chr16:30243168:-	ONLY_REF_SPLICE	YES	0	303	1	0.04	0.0089	0.116	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,RP11-347C12.1->chr16:30234258-30265831:-	EFO21_OVARY	0.04	1	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	IAH1--IDI2-AS1	3	5	IAH1	6108	chr2:9621576:+	IDI2-AS1	18939	chr10:1081243:+	INCL_NON_REF_SPLICE	YES	51	0	0.14	1	0.0268	0.0446	IAH1->chr2:9613787-9636672:+,isoamyl_acetate-hydrolyzing_esterase_1_homolog,IDI2-AS1->IDI2_antisense_RNA_1,chr10:1068606-1090138:+	EFO21_OVARY	0.14	1	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	MT-ATP6--MT-CO1	4	1	MT-ATP6	1265	chrM:8791:+	MT-CO1	5019	chrM:6241:+	INCL_NON_REF_SPLICE	YES	7501	12253	0	0	0.0357	0.0089	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFO21_OVARY	0	0	0.0446	FALSE	183	104	9	328	0	FALSE	ACH-000308
EFO21_OVARY	MT-ND1--MT-RNR2	4	1	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	7	7986	0.42	0	0.0357	0.0089	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	0.42	0.0446	FALSE	120	26	5	87	0	FALSE	ACH-000308
EFO21_OVARY	CTD-2337A12.1--CAST	4	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	EFO21_OVARY	1	1	0.0357	TRUE	347	1186	183	220	0	FALSE	ACH-000308
EFO21_OVARY	MEX3C--MRO	4	0	MEX3C	2797	chr18:48722937:-	MRO	17099	chr18:48335774:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	MEX3C->chr18:48700920-48744674:-,mex-3_RNA_binding_family_member_C,MRO->chr18:48324574-48351772:-,maestro	EFO21_OVARY	1	1	0.0357	TRUE	0	2	0	1	2	TRUE	ACH-000308
EFO21_OVARY	MT-ATP6--MT-CO1	4	0	MT-ATP6	1074	chrM:8600:+	MT-CO1	5869	chrM:7091:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFO21_OVARY	1	1	0.0357	FALSE	183	104	9	328	0	FALSE	ACH-000308
EFO21_OVARY	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1100	chrM:8626:+	MT-RNR2	5246	chrM:2235:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	1	1	0.0357	FALSE	63	17	1	58	0	FALSE	ACH-000308
EFO21_OVARY	MT-CO1--MT-RNR2	3	4	MT-CO1	1453	chrM:6356:+	MT-RNR2	6134	chrM:2262:+	INCL_NON_REF_SPLICE	YES	12903	7922	0	0	0.0268	0.0357	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	0	0.0625	FALSE	44	51	6	21	0	FALSE	ACH-000308
EFO21_OVARY	PAFAH1B2--KIAA0196	4	0	PAFAH1B2	1152	chr11:117015134:+	KIAA0196	43428	chr8:126044636:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	PAFAH1B2->Oncogene{Bushman},chr11:117014983-117047610:+,platelet_activating_factor_acetylhydrolase_1b_catalytic_subunit_2,KIAA0196->KIAA0196,chr8:126036502-126104082:-	EFO21_OVARY	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	SLC4A7--NEK10	1	12	SLC4A7	30165	chr3:27420740:-	NEK10	41917	chr3:27394410:-	ONLY_REF_SPLICE	NO	20	0	0.39	1	0.0089	0.1071	NEIGHBORS[3263],SLC4A7->chr3:27414214-27525911:-,solute_carrier_family_4_member_7,NEK10->NIMA_related_kinase_10,chr3:27151576-27410951:-	EFO21_OVARY	0.39	1	0.116	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	GNGT1--AC002076.10	3	3	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	10	27	0.38	0.18	0.0268	0.0268	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	EFO21_OVARY	0.18	0.38	0.0536	FALSE	0	28	0	37	0	FALSE	ACH-000308
EFO21_OVARY	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	5057	0	0	1	0.0268	0.0268	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	1	0.0536	FALSE	63	17	1	58	0	FALSE	ACH-000308
EFO21_OVARY	NPIPB5--BCAS3	3	3	NPIPB5	24010	chr16:22538986:+	BCAS3	42550	chr17:58824559:+	ONLY_REF_SPLICE	YES	362	0	0.02	1	0.0268	0.0268	NPIPB5->chr16:22490442-22547842:+,nuclear_pore_complex_interacting_protein_family_member_B5,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	EFO21_OVARY	0.02	1	0.0536	TRUE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	RP11-1L12.3--SLC5A12	3	3	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0268	0.0268	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	EFO21_OVARY	0.86	1	0.0536	TRUE	3	101	0	60	0	FALSE	ACH-000308
EFO21_OVARY	IAH1--IDI2-AS1	2	6	IAH1	6108	chr2:9621576:+	IDI2-AS1	18926	chr10:1081230:+	ONLY_REF_SPLICE	YES	51	0	0.14	1	0.0178	0.0535	IAH1->chr2:9613787-9636672:+,isoamyl_acetate-hydrolyzing_esterase_1_homolog,IDI2-AS1->IDI2_antisense_RNA_1,chr10:1068606-1090138:+	EFO21_OVARY	0.14	1	0.0713	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	MT-ND1--MT-RNR2	3	2	MT-ND1	1462	chrM:3768:+	MT-RNR2	5687	chrM:2401:+	INCL_NON_REF_SPLICE	YES	44	10526	0.1	0	0.0268	0.0178	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	0	0.1	0.0446	FALSE	120	26	5	87	0	FALSE	ACH-000308
EFO21_OVARY	SHISA9--U91319.1	2	6	SHISA9	9974	chr16:13297406:+	U91319.1	24024	chr16:13568067:+	ONLY_REF_SPLICE	YES	69	20	0.1	0.29	0.0178	0.0535	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	EFO21_OVARY	0.1	0.29	0.0713	FALSE	1	17	0	8	0	FALSE	ACH-000308
EFO21_OVARY	CANX--HMGB3P22	1	9	CANX	2847	chr5:179126103:+	HMGB3P22	26412	chr5:179121307:+	ONLY_REF_SPLICE	NO	545	10	0.02	0.5	0.0089	0.0803	NEIGHBORS_OVERLAP:+:+:[15749],CANX->calnexin,chr5:179105629-179157926:+,HMGB3P22->chr5:179106033-179121782:+,high_mobility_group_box_3_pseudogene_22	EFO21_OVARY	0.02	0.5	0.0892	FALSE	0	1	0	1	0	FALSE	ACH-000308
EFO21_OVARY	FXR1--SOX2-OT	3	1	FXR1	3131	chr3:180630524:+	SOX2-OT	39461	chr3:180893302:+	ONLY_REF_SPLICE	YES	16	5	0.2	0.44	0.0268	0.0089	NEIGHBORS[7017],FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	EFO21_OVARY	0.2	0.44	0.0357	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	MT-ATP6--MT-CO1	3	1	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	YES	2453	13409	0	0	0.0268	0.0089	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	EFO21_OVARY	0	0	0.0357	FALSE	183	104	9	328	0	FALSE	ACH-000308
EFO21_OVARY	PTK2--AGO2	3	1	PTK2	12863	chr8:141900642:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	179	1	0.02	0.8	0.0268	0.0089	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	EFO21_OVARY	0.02	0.8	0.0357	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	RP4-565E6.1--HYDIN	3	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0.0089	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	EFO21_OVARY	1	1	0.0357	TRUE	456	1387	91	133	0	FALSE	ACH-000308
EFO21_OVARY	ATP6V0C--MT-ATP8	3	0	ATP6V0C	3289	chr16:2569760:+	MT-ATP8	6814	chrM:8431:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	ATP6V0C->ATPase_H+_transporting_V0_subunit_c,chr16:2563871-2570219:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	EFO21_OVARY	1	1	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	LINC00152--AC093616.4	3	0	LINC00152	1278	chr2:87755164:+	AC093616.4	21811	chr2:88012878:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	EFO21_OVARY	1	1	0.0268	FALSE	0	0	0	3	0	FALSE	ACH-000308
EFO21_OVARY	MID1--CTPS2	3	0	MID1	13557	chrX:10437737:-	CTPS2	38165	chrX:16657366:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1,CTPS2->CTP_synthase_2,chrX:16606126-16731059:-	EFO21_OVARY	1	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1122	chrM:8648:+	MT-RNR2	5410	chrM:2399:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EFO21_OVARY	1	1	0.0268	FALSE	63	17	1	58	0	FALSE	ACH-000308
EFO21_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EFO21_OVARY	1	1	0.0268	FALSE	499	1288	110	792	0	FALSE	ACH-000308
EFO21_OVARY	RASSF6--RP11-447E20.1	3	0	RASSF6	3489	chr4:74477448:-	RP11-447E20.1	20487	chr4:74643447:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	RASSF6->Oncogene{Bushman},Ras_association_domain_family_member_6,chr4:74437267-74486348:-,RP11-447E20.1->chr4:74643353-74643777:-	EFO21_OVARY	1	1	0.0268	TRUE	0	1	0	2	1	TRUE	ACH-000308
EFO21_OVARY	SHISA9--U91319.1	2	4	SHISA9	7683	chr16:13010672:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	113	0	0.05	1	0.0178	0.0357	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	EFO21_OVARY	0.05	1	0.0535	FALSE	2	8	0	8	0	FALSE	ACH-000308
EFO21_OVARY	GNGT1--AC002076.10	2	3	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	16	27	0.24	0.16	0.0178	0.0268	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	EFO21_OVARY	0.16	0.24	0.0446	FALSE	0	10	0	30	0	FALSE	ACH-000308
EFO21_OVARY	NRIP1--AF127936.7	2	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.19	1	0.0178	0.0268	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	EFO21_OVARY	0.19	1	0.0446	FALSE	125	705	46	456	0	FALSE	ACH-000308
EFO21_OVARY	TULP4--TMEM181	2	3	TULP4	2609	chr6:158735300:+	TMEM181	32805	chr6:159006336:+	ONLY_REF_SPLICE	YES	5	37	0.5	0.12	0.0178	0.0268	NEIGHBORS[24608],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181	EFO21_OVARY	0.12	0.5	0.0446	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	NPIPB5--BCAS3	1	6	NPIPB5	24318	chr16:22539294:+	BCAS3	43635	chr17:58885365:+	ONLY_REF_SPLICE	YES	222	1	0.03	0.88	0.0089	0.0535	NPIPB5->chr16:22490442-22547842:+,nuclear_pore_complex_interacting_protein_family_member_B5,BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+	EFO21_OVARY	0.03	0.88	0.0624	TRUE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	PIK3AP1--LYSMD4	2	2	PIK3AP1	13230	chr10:98388155:-	LYSMD4	35536	chr15:100261171:-	ONLY_REF_SPLICE	YES	14	0	0.22	1	0.0178	0.0178	PIK3AP1->chr10:98353069-98480271:-,phosphoinositide-3-kinase_adaptor_protein_1,LYSMD4->LysM_domain_containing_4,chr15:100255902-100273766:-	EFO21_OVARY	0.22	1	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	TULP4--TMEM181	1	6	TULP4	2609	chr6:158735300:+	TMEM181	30658	chr6:159001972:+	ONLY_REF_SPLICE	YES	5	3	0.58	0.7	0.0089	0.0535	NEIGHBORS[24608],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181	EFO21_OVARY	0.58	0.7	0.0624	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	PTK2--AGO2	2	1	PTK2	14257	chr8:141889570:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	178	1	0.02	0.75	0.0178	0.0089	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	EFO21_OVARY	0.02	0.75	0.0267	FALSE	0	1	0	1	0	FALSE	ACH-000308
EFO21_OVARY	ATR--UBAP2L	2	0	ATR	2273	chr3:142286905:-	UBAP2L	67421	chr1:154221715:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	CANX--PPFIA1	2	0	CANX	7200	chr5:179132853:+	PPFIA1	29647	chr11:70172368:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	CANX->calnexin,chr5:179105629-179157926:+,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	CCAT1--CASC8	1	4	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	64	1	0.07	0.83	0.0089	0.0357	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	EFO21_OVARY	0.07	0.83	0.0446	TRUE	0	7	0	14	6	TRUE	ACH-000308
EFO21_OVARY	COPB2--ATP13A3	2	0	COPB2	17575	chr3:139085410:-	ATP13A3	50636	chr3:194152621:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,ATP13A3->ATPase_13A3,chr3:194123401-194219093:-	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	CTPS2--MID1	2	0	CTPS2	18650	chrX:16627664:-	MID1	36979	chrX:10442790:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	CTPS2->CTP_synthase_2,chrX:16606126-16731059:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	FAM155A--TMCC1	2	0	FAM155A	2054	chr13:108518030:-	TMCC1	18283	chr3:129551669:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	FAM155A->chr13:107820883-108519083:-,family_with_sequence_similarity_155_member_A,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	KLHL24--TSC22D2	2	0	KLHL24	6357	chr3:183369064:+	TSC22D2	27903	chr3:150174863:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	KLHL24->chr3:183353356-183402265:+,kelch_like_family_member_24,TSC22D2->TSC22_domain_family_member_2,chr3:150126122-150184218:+	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	LINC00152--AC093616.4	2	0	LINC00152	1278	chr2:87755164:+	AC093616.4	20662	chr2:88007281:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	EFO21_OVARY	1	1	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	LINC00665--CHMP1A	2	0	LINC00665	10538	chr19:36806859:-	CHMP1A	21206	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	LINC00665->chr19:36803969-36822620:-,long_intergenic_non-protein_coding_RNA_665,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	PIK3AP1--LYSMD4	2	0	PIK3AP1	13230	chr10:98388155:-	LYSMD4	36719	chr15:100258027:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	PIK3AP1->chr10:98353069-98480271:-,phosphoinositide-3-kinase_adaptor_protein_1,LYSMD4->LysM_domain_containing_4,chr15:100255902-100273766:-	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	PPM1A--HNRNPC	2	0	PPM1A	2705	chr14:60716395:+	HNRNPC	35307	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	PPM1A->chr14:60712470-60765805:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1A,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	PTK2--AGO2	2	0	PTK2	9058	chr8:141935760:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	EFO21_OVARY	1	1	0.0178	FALSE	0	0	0	3	0	FALSE	ACH-000308
EFO21_OVARY	PTK2--AGO2	2	0	PTK2	14257	chr8:141889570:-	AGO2	70087	chr8:141583031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	EFO21_OVARY	1	1	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	EFO21_OVARY	1	1	0.0178	FALSE	16	356	14	466	0	FALSE	ACH-000308
EFO21_OVARY	RP3-400B16.4--OSBPL9	2	0	RP3-400B16.4	1123	chr6:4135779:+	OSBPL9	38696	chr1:52253387:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	RP3-400B16.4->chr6:4135657-4146287:+,OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	SLC15A1--DOCK9	2	0	SLC15A1	15735	chr13:99354734:-	DOCK9	64629	chr13:99489863:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	LOCAL_REARRANGEMENT:-:[40833],SLC15A1->chr13:99336055-99404908:-,solute_carrier_family_15_member_1,DOCK9->chr13:99445741-99738879:-,dedicator_of_cytokinesis_9	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	SLC38A2--METTL17	2	0	SLC38A2	8190	chr12:46756804:-	METTL17	22442	chr14:21464368:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,METTL17->chr14:21457929-21465189:+,methyltransferase_like_17	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	SRSF7--DHX57	2	0	SRSF7	3916	chr2:38975721:-	DHX57	25053	chr2:39075544:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	LOCAL_REARRANGEMENT:-:[46235],SRSF7->chr2:38970741-38978636:-,serine/arginine-rich_splicing_factor_7,DHX57->DEAH-box_helicase_57,chr2:39024871-39103075:-	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	SUGP2--TBC1D32	2	0	SUGP2	6862	chr19:19129918:-	TBC1D32	57599	chr6:121436387:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	SUGP2->SURP_and_G-patch_domain_containing_2,chr19:19101697-19144832:-,TBC1D32->TBC1_domain_family_member_32,chr6:121400640-121655891:-	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	VNN3--RPS12	2	0	VNN3	1513	chr6:133055392:-	RPS12	15043	chr6:133137600:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	GTEx_v2:{count=1;pct=0.01%;dist=Liver=1},LOCAL_INVERSION:-:+:[79676],VNN3->chr6:133043926-133055904:-,vanin_3,RPS12->chr6:133135580-133138703:+,ribosomal_protein_S12	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	ZNF383--AC016582.2	2	0	ZNF383	2824	chr19:37710651:+	AC016582.2	18809	chr19:38324154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	ZNF383->chr19:37708828-37734828:+,zinc_finger_protein_383,AC016582.2->chr19:38314362-38345855:-	EFO21_OVARY	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	FAM155A--GNL3L	1	3	FAM155A	2054	chr13:108518030:-	GNL3L	10688	chrX:54558953:+	ONLY_REF_SPLICE	YES	0	28	1	0.12	0.0089	0.0268	FAM155A->chr13:107820883-108519083:-,family_with_sequence_similarity_155_member_A,GNL3L->G_protein_nucleolar_3_like,chrX:54556644-54587504:+	EFO21_OVARY	0.12	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	LINC00152--AC093616.4	1	3	LINC00152	1278	chr2:87755164:+	AC093616.4	17233	chr2:88000503:+	ONLY_REF_SPLICE	YES	282	0	0.01	1	0.0089	0.0268	NEIGHBORS[94179],LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152,AC093616.4->chr2:88000503-88038766:+	EFO21_OVARY	0.01	1	0.0357	FALSE	0	0	0	11	0	FALSE	ACH-000308
EFO21_OVARY	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	20	0	0.17	1	0.0089	0.0268	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	EFO21_OVARY	0.17	1	0.0357	FALSE	164	806	69	479	0	FALSE	ACH-000308
EFO21_OVARY	DHX40--VMP1	1	2	DHX40	10663	chr17:57663594:+	VMP1	38423	chr17:57915656:+	ONLY_REF_SPLICE	YES	142	468	0.02	0.01	0.0089	0.0178	NEIGHBORS[98847],DHX40->DEAH-box_helicase_40,chr17:57642886-57685706:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	EFO21_OVARY	0.01	0.02	0.0267	FALSE	0	0	0	2	0	FALSE	ACH-000308
EFO21_OVARY	RALA--CDK13	1	2	RALA	1343	chr7:39663424:+	CDK13	21232	chr7:40085435:+	ONLY_REF_SPLICE	YES	78	62	0.04	0.05	0.0089	0.0178	RALA->Oncogene{Bushman},chr7:39663082-39747723:+,v-ral_simian_leukemia_viral_oncogene_homolog_A_(ras_related),CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13	EFO21_OVARY	0.04	0.05	0.0267	TRUE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	SHISA9--U91319.1	1	2	SHISA9	7683	chr16:13010672:+	U91319.1	24024	chr16:13568067:+	ONLY_REF_SPLICE	YES	113	20	0.03	0.13	0.0089	0.0178	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	EFO21_OVARY	0.03	0.13	0.0267	FALSE	0	1	0	6	0	FALSE	ACH-000308
EFO21_OVARY	KANSL1--ARL17B	1	1	KANSL1	9741	chr17:44171926:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	49	7	0.04	0.22	0.0089	0.0089	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	EFO21_OVARY	0.04	0.22	0.0178	TRUE	51	25	1	17	0	FALSE	ACH-000308
EFO21_OVARY	PPM1B--THADA	1	1	PPM1B	5284	chr2:44436466:+	THADA	40080	chr2:43783694:-	ONLY_REF_SPLICE	YES	286	49	0.01	0.04	0.0089	0.0089	PPM1B->chr2:44395108-44471523:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1B,THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-	EFO21_OVARY	0.01	0.04	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000308
EFO21_OVARY	TPRG1--RP11-85M11.2	1	1	TPRG1	5882	chr3:188741735:+	RP11-85M11.2	46029	chr3:165298647:+	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0089	0.0089	TPRG1->chr3:188665003-189043093:+,tumor_protein_p63_regulated_1,RP11-85M11.2->chr3:164924748-165373211:+	EFO21_OVARY	0.25	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000308
EFO21_OVARY	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	24	0	0.08	1	0.0089	0.0089	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	EFO21_OVARY	0.08	1	0.0178	FALSE	272	151	14	158	0	FALSE	ACH-000308
HS840T_FIBROBLAST	TIMM23B--LINC00843	91	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2029	0.1983	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS840T_FIBROBLAST	1	1	1.4012	TRUE	508	994	45	981	0	FALSE	ACH-000284
HS840T_FIBROBLAST	TIMM23--RP11-464F9.1	52	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6873	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS840T_FIBROBLAST	1	1	0.6873	TRUE	519	3926	326	965	0	FALSE	ACH-000284
HS840T_FIBROBLAST	RP11-680G10.1--GSE1	34	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	22	1	0.62	0.4494	0.0264	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS840T_FIBROBLAST	0.62	1	0.4758	TRUE	465	1949	224	605	0	FALSE	ACH-000284
HS840T_FIBROBLAST	RP11-680G10.1--GSE1	25	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.95	0.3305	0.1322	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS840T_FIBROBLAST	0.95	1	0.4627	TRUE	458	1351	185	561	0	FALSE	ACH-000284
HS840T_FIBROBLAST	PLXDC1--TAF13	25	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3305	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS840T_FIBROBLAST	1	1	0.3305	TRUE	7	10	0	216	0	FALSE	ACH-000284
HS840T_FIBROBLAST	MT-ND6--MT-TE	22	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2908	0.0264	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS840T_FIBROBLAST	1	1	0.3172	FALSE	499	1288	110	792	0	FALSE	ACH-000284
HS840T_FIBROBLAST	MT-ND4--MT-ND4L	6	60	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0793	0.7931	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS840T_FIBROBLAST	0.99	1	0.8724	FALSE	344	821	44	306	0	FALSE	ACH-000284
HS840T_FIBROBLAST	MT-TA--MT-TC	16	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2115	0.0529	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS840T_FIBROBLAST	1	1	0.2644	FALSE	462	80	0	856	0	FALSE	ACH-000284
HS840T_FIBROBLAST	MT-ND6--MT-TE	14	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1851	0.119	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS840T_FIBROBLAST	0.96	1	0.3041	FALSE	499	1288	110	792	0	FALSE	ACH-000284
HS840T_FIBROBLAST	MT-ND6--MT-TE	13	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1718	0.0264	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS840T_FIBROBLAST	1	1	0.1982	FALSE	499	1288	110	792	0	FALSE	ACH-000284
HS840T_FIBROBLAST	PRR16--CTD-2334D19.1	12	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	59	0	0.19	1	0.1586	0.0264	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS840T_FIBROBLAST	0.19	1	0.185	FALSE	56	216	12	147	0	FALSE	ACH-000284
HS840T_FIBROBLAST	MT-ND4--MT-ND4L	7	19	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	263	0	0.09	1	0.0925	0.2511	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS840T_FIBROBLAST	0.09	1	0.3436	FALSE	344	827	44	306	0	FALSE	ACH-000284
HS840T_FIBROBLAST	RP11-444D3.1--SOX5	9	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.119	0.0132	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS840T_FIBROBLAST	1	1	0.1322	TRUE	477	1352	189	275	0	FALSE	ACH-000284
HS840T_FIBROBLAST	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.119	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HS840T_FIBROBLAST	1	1	0.119	FALSE	13	9	0	364	0	FALSE	ACH-000284
HS840T_FIBROBLAST	MT-TA--MT-TC	8	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1057	0.0529	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS840T_FIBROBLAST	1	1	0.1586	FALSE	462	80	0	856	0	FALSE	ACH-000284
HS840T_FIBROBLAST	C15orf57--CBX3	7	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	47	19	0.19	0.37	0.0925	0.0529	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS840T_FIBROBLAST	0.19	0.37	0.1454	TRUE	267	562	48	632	0	FALSE	ACH-000284
HS840T_FIBROBLAST	COL1A1--NPM1	7	3	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	6876	1	0	0.91	0.0925	0.0397	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HS840T_FIBROBLAST	0	0.91	0.1322	TRUE	0	0	0	31	0	FALSE	ACH-000284
HS840T_FIBROBLAST	MT-ND4--MT-ND4L	3	19	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	465	0	0.05	1	0.0397	0.2511	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS840T_FIBROBLAST	0.05	1	0.2908	FALSE	344	827	44	306	0	FALSE	ACH-000284
HS840T_FIBROBLAST	MT-ND6--MT-TE	4	13	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0529	0.1718	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS840T_FIBROBLAST	0.94	1	0.2247	FALSE	499	1288	110	792	0	FALSE	ACH-000284
HS840T_FIBROBLAST	JUN--MT2A	7	0	JUN	2308	chr1:59248478:-	MT2A	7705	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0925	0	JUN->ArcherDX_panel,FoundationOne_panel,Jun_proto-oncogene,_AP-1_transcription_factor_subunit,Oncogene{Bushman},chr1:59246465-59249785:-,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS840T_FIBROBLAST	1	1	0.0925	TRUE	0	0	0	6	0	TRUE	ACH-000284
HS840T_FIBROBLAST	MT-ND6--MT-TE	4	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0.1322	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS840T_FIBROBLAST	1	1	0.1851	FALSE	499	1288	110	792	0	FALSE	ACH-000284
HS840T_FIBROBLAST	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0793	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS840T_FIBROBLAST	1	1	0.0793	FALSE	292	1546	117	613	0	FALSE	ACH-000284
HS840T_FIBROBLAST	ANPEP--MT-ND4L	5	2	ANPEP	16060	chr15:90328379:-	MT-ND4L	19321	chrM:10471:+	INCL_NON_REF_SPLICE	YES	446	0	0.02	1	0.0661	0.0264	ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HS840T_FIBROBLAST	0.02	1	0.0925	FALSE	0	1	0	16	0	FALSE	ACH-000284
HS840T_FIBROBLAST	VIM--TPM2	5	0	VIM	2156	chr10:17271413:+	TPM2	13400	chr9:35689822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS840T_FIBROBLAST	1	1	0.0661	TRUE	0	0	0	8	0	TRUE	ACH-000284
HS840T_FIBROBLAST	VIM--TPM2	5	0	VIM	2142	chr10:17271399:+	TPM2	13302	chr9:35689920:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS840T_FIBROBLAST	1	1	0.0661	TRUE	0	0	0	8	0	TRUE	ACH-000284
HS840T_FIBROBLAST	RP11-334E6.12--MT2A	3	7	RP11-334E6.12	2039	chr11:119289699:+	MT2A	5557	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	246	2	0.04	0.83	0.0397	0.0925	RP11-334E6.12->chr11:119288661-119289824:+,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS840T_FIBROBLAST	0.04	0.83	0.1322	TRUE	0	0	0	7	0	TRUE	ACH-000284
HS840T_FIBROBLAST	COL1A1--RAD23B	3	6	COL1A1	12994	chr17:48266781:-	RAD23B	27178	chr9:110068773:+	INCL_NON_REF_SPLICE	YES	6760	479	0	0.02	0.0397	0.0793	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,RAD23B->Oncogene{Bushman},RAD23_homolog_B,_nucleotide_excision_repair_protein,chr9:110045418-110094475:+	HS840T_FIBROBLAST	0	0.02	0.119	TRUE	0	0	0	4	0	FALSE	ACH-000284
HS840T_FIBROBLAST	COL1A1--RAD23B	3	6	COL1A1	12987	chr17:48266788:-	RAD23B	27171	chr9:110068766:+	INCL_NON_REF_SPLICE	YES	6793	466	0	0.02	0.0397	0.0793	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,RAD23B->Oncogene{Bushman},RAD23_homolog_B,_nucleotide_excision_repair_protein,chr9:110045418-110094475:+	HS840T_FIBROBLAST	0	0.02	0.119	TRUE	0	0	0	4	0	FALSE	ACH-000284
HS840T_FIBROBLAST	MT-ND6--MT-TE	3	6	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0397	0.0793	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS840T_FIBROBLAST	1	1	0.119	FALSE	499	1288	110	792	0	FALSE	ACH-000284
HS840T_FIBROBLAST	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS840T_FIBROBLAST	1	1	0.0529	FALSE	462	80	0	856	0	FALSE	ACH-000284
HS840T_FIBROBLAST	VIM--TMSB4X	4	0	VIM	2162	chr10:17271419:+	TMSB4X	13357	chrX:12994379:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS840T_FIBROBLAST	1	1	0.0529	TRUE	0	0	0	15	0	TRUE	ACH-000284
HS840T_FIBROBLAST	VIM--TPM2	4	0	VIM	2115	chr10:17271372:+	TPM2	13298	chr9:35689924:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS840T_FIBROBLAST	1	1	0.0529	TRUE	0	0	0	8	0	TRUE	ACH-000284
HS840T_FIBROBLAST	AC027612.6--COMMD1	3	1	AC027612.6	3373	chr2:91843394:-	COMMD1	19797	chr2:62227836:+	ONLY_REF_SPLICE	YES	193	132	0.02	0.03	0.0397	0.0132	AC027612.6->chr2:91805186-91847998:-,COMMD1->chr2:62115859-62374382:+,copper_metabolism_domain_containing_1	HS840T_FIBROBLAST	0.02	0.03	0.0529	TRUE	0	0	0	1	0	FALSE	ACH-000284
HS840T_FIBROBLAST	NRIP1--AF127936.7	3	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.22	1	0.0397	0.0132	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS840T_FIBROBLAST	0.22	1	0.0529	FALSE	164	806	69	479	0	FALSE	ACH-000284
HS840T_FIBROBLAST	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS840T_FIBROBLAST	1	1	0.0397	FALSE	499	1288	110	792	0	FALSE	ACH-000284
HS840T_FIBROBLAST	VIM--TMSB4X	3	0	VIM	2153	chr10:17271410:+	TMSB4X	13348	chrX:12994370:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	VIM->chr10:17270258-17279592:+,vimentin,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	HS840T_FIBROBLAST	1	1	0.0397	TRUE	0	0	0	15	0	TRUE	ACH-000284
HS840T_FIBROBLAST	VIM--TPM2	3	0	VIM	2476	chr10:17271733:+	TPM2	16358	chr9:35684499:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS840T_FIBROBLAST	1	1	0.0397	TRUE	0	0	0	2	0	TRUE	ACH-000284
HS840T_FIBROBLAST	VIM--TPM2	3	0	VIM	2115	chr10:17271372:+	TPM2	13337	chr9:35689885:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	GTEx&tcga_normals:44/3694=1.19%,GTEx:0.84%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},VIM->chr10:17270258-17279592:+,vimentin,TPM2->chr9:35681989-35691017:-,tropomyosin_2_(beta)	HS840T_FIBROBLAST	1	1	0.0397	TRUE	0	0	0	8	0	TRUE	ACH-000284
HS840T_FIBROBLAST	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0.0132	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS840T_FIBROBLAST	1	1	0.0396	TRUE	274	363	69	150	0	FALSE	ACH-000284
HS840T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	1	0.43	0.75	0.0264	0.0132	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS840T_FIBROBLAST	0.43	0.75	0.0396	FALSE	515	4851	409	746	0	FALSE	ACH-000284
HS840T_FIBROBLAST	GREM2--FMN2	2	0	GREM2	1266	chr1:240775184:-	FMN2	27193	chr1:240492376:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[14384],GREM2->chr1:240652873-240775449:-,gremlin_2,_DAN_family_BMP_antagonist,FMN2->chr1:240177648-240638489:+,formin_2	HS840T_FIBROBLAST	1	1	0.0264	TRUE	0	0	0	2	0	TRUE	ACH-000284
HS840T_FIBROBLAST	MTM1--SNX5	2	0	MTM1	1044	chrX:149737112:+	SNX5	38028	chr20:17923839:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	MTM1->chrX:149737069-149841795:+,myotubularin_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	HS840T_FIBROBLAST	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000284
HS840T_FIBROBLAST	RP11-114H23.1--RP11-114H23.2	2	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HS840T_FIBROBLAST	1	1	0.0264	FALSE	81	155	12	160	0	FALSE	ACH-000284
HS840T_FIBROBLAST	WHSC1--GABPA	2	0	WHSC1	1119	chr4:1873269:+	GABPA	49046	chr21:27113884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0264	0	WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+,GABPA->GA_binding_protein_transcription_factor_alpha_subunit,chr21:27106881-27144771:+	HS840T_FIBROBLAST	1	1	0.0264	TRUE	0	0	0	1	0	TRUE	ACH-000284
HS840T_FIBROBLAST	ANPEP--AP3S2	1	2	ANPEP	10914	chr15:90340806:-	AP3S2	32730	chr15:90378875:-	ONLY_REF_SPLICE	YES	731	88	0	0.03	0.0132	0.0264	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:-:[15198],ANPEP->alanyl_aminopeptidase,_membrane,chr15:90328120-90358633:-,AP3S2->adaptor_related_protein_complex_3_sigma_2_subunit,chr15:90373831-90437574:-	HS840T_FIBROBLAST	0	0.03	0.0396	FALSE	0	0	0	1	0	FALSE	ACH-000284
HS840T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0132	0.0132	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS840T_FIBROBLAST	0.33	1	0.0264	FALSE	407	2205	196	549	0	FALSE	ACH-000284
HS840T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0132	0.0132	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS840T_FIBROBLAST	0.67	1	0.0264	FALSE	467	2173	244	435	0	FALSE	ACH-000284
HS840T_FIBROBLAST	TSPAN5--METAP1	1	1	TSPAN5	1484	chr4:99579297:-	METAP1	24467	chr4:99950018:+	ONLY_REF_SPLICE	YES	54	128	0.04	0.02	0.0132	0.0132	{Klijn_CCL:Breast=1,Colo-Rectal=1},TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1	HS840T_FIBROBLAST	0.02	0.04	0.0264	TRUE	0	4	0	3	1	FALSE	ACH-000284
HS840T_FIBROBLAST	YWHAE--ABR	1	1	YWHAE	1332	chr17:1303341:-	ABR	26806	chr17:1003975:-	ONLY_REF_SPLICE	YES	1403	45	0	0.04	0.0132	0.0132	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,ABR->Oncogene{Bushman},active_BCR-related,chr17:906758-1132315:-	HS840T_FIBROBLAST	0	0.04	0.0264	FALSE	0	0	0	4	0	FALSE	ACH-000284
RD_SOFT_TISSUE	PTPLAD1--IGF2	270	15	PTPLAD1	18266	chr15:65869815:+	IGF2	32690	chr11:2153287:-	INCL_NON_REF_SPLICE	YES	271	4072	0.51	0.07	2.163	0.1202	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0.07	0.51	2.2832	TRUE	0	0	0	4	0	TRUE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	264	10	PTPLAD1	18266	chr15:65869815:+	IGF2	32899	chr11:2153078:-	INCL_NON_REF_SPLICE	YES	271	6448	0.5	0.04	2.1149	0.0801	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0.04	0.5	2.195	TRUE	0	0	0	4	0	TRUE	ACH-000169
RD_SOFT_TISSUE	SPG20--COG6	159	51	SPG20	8057	chr13:36903499:-	COG6	35562	chr13:40293373:+	ONLY_REF_SPLICE	YES	88	12	0.7	0.95	1.2738	0.4086	SPG20->chr13:36875775-36944317:-,spastic_paraplegia_20_(Troyer_syndrome),COG6->chr13:40229764-40365802:+,component_of_oligomeric_golgi_complex_6	RD_SOFT_TISSUE	0.7	0.95	1.6824	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	TIMM23B--LINC00843	149	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.1936	0.2163	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RD_SOFT_TISSUE	0.99	1	1.4099	TRUE	508	994	45	981	0	FALSE	ACH-000169
RD_SOFT_TISSUE	KANSL1--ARL17B	92	29	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	57	49	0.68	0.71	0.737	0.2323	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	RD_SOFT_TISSUE	0.68	0.71	0.9693	TRUE	181	1564	124	196	0	FALSE	ACH-000169
RD_SOFT_TISSUE	LRP11--FSD1	92	14	LRP11	3814	chr6:150174139:-	FSD1	16042	chr19:4305943:+	ONLY_REF_SPLICE	YES	18	33	0.85	0.76	0.737	0.1122	{Klijn_CCL:Lung=1},LRP11->LDL_receptor_related_protein_11,chr6:150139934-150186199:-,FSD1->chr19:4304597-4323840:+,fibronectin_type_III_and_SPRY_domain_containing_1	RD_SOFT_TISSUE	0.76	0.85	0.8492	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	TANC1--DAPL1	82	27	TANC1	2259	chr2:159857701:+	DAPL1	46461	chr2:159718918:+	INCL_NON_REF_SPLICE	YES	104	0	0.51	1	0.6569	0.2163	GTEx&tcga_normals:1/3694=0.03%,TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,DAPL1->chr2:159651829-159719293:+,death_associated_protein_like_1	RD_SOFT_TISSUE	0.51	1	0.8732	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	PSMD1--RP11-566H8.3	82	11	PSMD1	12030	chr2:231945028:+	RP11-566H8.3	32972	chr8:31241673:+	ONLY_REF_SPLICE	YES	423	0	0.18	1	0.6569	0.0881	PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1,RP11-566H8.3->chr8:31133112-31241795:+	RD_SOFT_TISSUE	0.18	1	0.745	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	TIMM23--RP11-464F9.1	77	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	228	3	0.26	0.96	0.6169	0.016	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RD_SOFT_TISSUE	0.26	0.96	0.6329	TRUE	519	3926	326	965	0	FALSE	ACH-000169
RD_SOFT_TISSUE	RP11-680G10.1--GSE1	64	14	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.93	0.5127	0.1122	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RD_SOFT_TISSUE	0.93	1	0.6249	TRUE	458	1351	185	561	0	FALSE	ACH-000169
RD_SOFT_TISSUE	KIF1B--UBE4B	62	11	KIF1B	4353	chr1:10292492:+	UBE4B	92212	chr1:10221200:+	ONLY_REF_SPLICE	YES	61	103	0.54	0.41	0.4967	0.0881	YOSHIHARA_TCGA_num_samples[GBM:1|KIRC:1],LOCAL_REARRANGEMENT:+:[29566],KIF1B->chr1:10270863-10441661:+,kinesin_family_member_1B,UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B	RD_SOFT_TISSUE	0.41	0.54	0.5848	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	58	13	PTPLAD1	18266	chr15:65869815:+	IGF2	32735	chr11:2153242:-	INCL_NON_REF_SPLICE	YES	271	4604	0.21	0.02	0.4646	0.1041	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0.02	0.21	0.5687	TRUE	0	0	0	4	0	FALSE	ACH-000169
RD_SOFT_TISSUE	E2F5--PDE4DIP	57	2	E2F5	1430	chr8:86089889:+	PDE4DIP	44361	chr1:144917932:-	ONLY_REF_SPLICE	YES	7	40	0.89	0.6	0.4566	0.016	{Klijn_CCL:Lung=1},E2F5->E2F_transcription_factor_5,chr8:86089460-86129387:+,PDE4DIP->Oncogene{Bushman},chr1:144836157-145076186:-,phosphodiesterase_4D_interacting_protein	RD_SOFT_TISSUE	0.6	0.89	0.4726	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	RP11-680G10.1--GSE1	54	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	41	1	0.59	0.4326	0.032	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RD_SOFT_TISSUE	0.59	1	0.4646	TRUE	465	1949	224	605	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-TA--MT-TC	51	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4086	0.0641	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RD_SOFT_TISSUE	1	1	0.4727	FALSE	462	80	0	856	0	FALSE	ACH-000169
RD_SOFT_TISSUE	SPATA5L1--TMIGD2	45	15	SPATA5L1	9557	chr15:45709597:+	TMIGD2	17670	chr19:4294813:-	ONLY_REF_SPLICE	YES	11	1	0.85	0.98	0.3605	0.1202	SPATA5L1->chr15:45694529-45713617:+,spermatogenesis_associated_5_like_1,TMIGD2->chr19:4292229-4302428:-,transmembrane_and_immunoglobulin_domain_containing_2	RD_SOFT_TISSUE	0.85	0.98	0.4807	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	PAK4--RYR1	42	8	PAK4	11086	chr19:39667355:+	RYR1	35075	chr19:38951015:+	ONLY_REF_SPLICE	YES	80	92	0.38	0.35	0.3365	0.0641	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	RD_SOFT_TISSUE	0.35	0.38	0.4006	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	PLXDC1--TAF13	44	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3525	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	RD_SOFT_TISSUE	1	1	0.3525	TRUE	7	10	0	216	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	3	162	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	6	0	0.96	1	0.024	1.2978	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.96	1	1.3218	FALSE	344	827	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	3	159	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	14	0	0.92	1	0.024	1.2738	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.92	1	1.2978	FALSE	344	826	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	3	106	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	3	0.96	0.97	0.024	0.8492	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.96	0.97	0.8732	FALSE	344	821	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND6--MT-TE	27	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2163	0.0401	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RD_SOFT_TISSUE	1	1	0.2564	FALSE	499	1288	110	792	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	14	43	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	6838	0	0.01	1	0.1122	0.3445	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.01	1	0.4567	FALSE	328	800	43	304	0	FALSE	ACH-000169
RD_SOFT_TISSUE	DDX50--CCAR1	21	14	DDX50	2976	chr10:70666763:+	CCAR1	26809	chr10:70508893:+	ONLY_REF_SPLICE	YES	49	126	0.42	0.22	0.1682	0.1122	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},DDX50->DEAD-box_helicase_50,chr10:70661034-70706603:+,CCAR1->cell_division_cycle_and_apoptosis_regulator_1,chr10:70480769-70552134:+	RD_SOFT_TISSUE	0.22	0.42	0.2804	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	SAMD5--SASH1	24	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	32	3	0.44	0.89	0.1923	0.008	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	RD_SOFT_TISSUE	0.44	0.89	0.2003	TRUE	53	396	64	110	0	FALSE	ACH-000169
RD_SOFT_TISSUE	DSCR4--KCNJ6	21	5	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	20	23	0.57	0.53	0.1682	0.0401	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	RD_SOFT_TISSUE	0.53	0.57	0.2083	FALSE	0	24	0	27	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	12	29	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	196	0	0.17	1	0.0961	0.2323	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.17	1	0.3284	FALSE	344	827	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	16	6	PTPLAD1	18246	chr15:65869795:+	IGF2	32926	chr11:2153051:-	INCL_NON_REF_SPLICE	NO	213	6763	0.09	0	0.1282	0.0481	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.09	0.1763	FALSE	0	0	0	4	0	FALSE	ACH-000169
RD_SOFT_TISSUE	RPSAP52--HMGA2	17	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	552	1	0.03	0.1362	0.008	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	RD_SOFT_TISSUE	0.03	1	0.1442	FALSE	0	59	0	125	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	6	43	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	4884	0	0.01	1	0.0481	0.3445	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.01	1	0.3926	FALSE	344	827	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	AP000525.9--LA16c-60G3.6	16	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	26	0	0.41	1	0.1282	0.016	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	RD_SOFT_TISSUE	0.41	1	0.1442	TRUE	0	42	0	133	42	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND6--MT-TE	14	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1122	0.0481	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RD_SOFT_TISSUE	1	1	0.1603	FALSE	499	1288	110	792	0	FALSE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	14	6	PTPLAD1	18246	chr15:65869795:+	IGF2	32814	chr11:2153163:-	INCL_NON_REF_SPLICE	NO	213	6503	0.09	0	0.1122	0.0481	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.09	0.1603	FALSE	0	0	0	4	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	5	41	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.0401	0.3285	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.92	1	0.3686	FALSE	344	821	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-TA--MT-TC	14	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1122	0.0401	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RD_SOFT_TISSUE	1	1	0.1523	FALSE	462	80	0	856	0	FALSE	ACH-000169
RD_SOFT_TISSUE	GLG1--FA2H	13	3	GLG1	1458	chr16:74640555:-	FA2H	38262	chr16:74774013:-	ONLY_REF_SPLICE	YES	82	0	0.16	1	0.1041	0.024	{Klijn_CCL:Head-Neck=1,Breast=1},GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,FA2H->chr16:74746853-74808729:-,fatty_acid_2-hydroxylase	RD_SOFT_TISSUE	0.16	1	0.1281	TRUE	0	0	0	2	0	TRUE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	3	43	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	322	0	0.12	1	0.024	0.3445	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.12	1	0.3685	FALSE	344	827	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND6--MT-TE	11	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.0881	0.0881	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RD_SOFT_TISSUE	0.85	1	0.1762	FALSE	499	1288	110	792	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	6	29	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	4041	0	0.01	1	0.0481	0.2323	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.01	1	0.2804	FALSE	344	827	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	6	29	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	370	0	0.09	1	0.0481	0.2323	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.09	1	0.2804	FALSE	344	827	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	SPG20--COG6	3	41	SPG20	8027	chr13:36903529:-	COG6	35562	chr13:40293373:+	INCL_NON_REF_SPLICE	YES	78	12	0.36	0.79	0.024	0.3285	SPG20->chr13:36875775-36944317:-,spastic_paraplegia_20_(Troyer_syndrome),COG6->chr13:40229764-40365802:+,component_of_oligomeric_golgi_complex_6	RD_SOFT_TISSUE	0.36	0.79	0.3525	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	MAF--RP11-679B19.2	12	4	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	1	1	0.94	0.0961	0.032	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	RD_SOFT_TISSUE	0.94	1	0.1281	TRUE	48	25	3	38	0	FALSE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	11	6	PTPLAD1	18244	chr15:65869793:+	IGF2	32926	chr11:2153051:-	INCL_NON_REF_SPLICE	NO	211	6763	0.07	0	0.0881	0.0481	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.07	0.1362	FALSE	0	0	0	4	0	FALSE	ACH-000169
RD_SOFT_TISSUE	HSP90AB1--MT-RNR2	12	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0961	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RD_SOFT_TISSUE	1	1	0.0961	FALSE	13	9	0	364	0	FALSE	ACH-000169
RD_SOFT_TISSUE	HSPBP1--GRK5	12	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0961	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	RD_SOFT_TISSUE	1	1	0.0961	TRUE	1	39	0	134	39	FALSE	ACH-000169
RD_SOFT_TISSUE	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0961	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	RD_SOFT_TISSUE	1	1	0.0961	TRUE	46	1352	75	139	0	FALSE	ACH-000169
RD_SOFT_TISSUE	RP11-1E3.1--RP11-455B3.1	11	3	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0881	0.024	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	RD_SOFT_TISSUE	1	1	0.1121	TRUE	13	49	2	38	0	FALSE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	7	18	FLNC	24925	chr7:128498698:+	IGF2	39452	chr11:2152942:-	INCL_NON_REF_SPLICE	YES	758	7289	0.03	0	0.0561	0.1442	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.03	0.2003	TRUE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND6--MT-TE	6	22	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.88	1	0.0481	0.1762	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RD_SOFT_TISSUE	0.88	1	0.2243	FALSE	499	1288	110	792	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	4	28	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	27	0	0.54	1	0.032	0.2243	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.54	1	0.2563	FALSE	344	827	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND6--MT-TE	5	24	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0401	0.1923	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RD_SOFT_TISSUE	0.94	1	0.2324	FALSE	499	1288	110	792	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	3	31	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	10	0	0.77	1	0.024	0.2483	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.77	1	0.2723	FALSE	344	826	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	5	22	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0401	0.1762	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.93	1	0.2163	FALSE	344	821	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	PAK4--RYR1	10	2	PAK4	11086	chr19:39667355:+	RYR1	38592	chr19:38956731:+	ONLY_REF_SPLICE	YES	80	77	0.13	0.13	0.0801	0.016	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	RD_SOFT_TISSUE	0.13	0.13	0.0961	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	4	25	FLNC	24870	chr7:128498643:+	IGF2	39251	chr11:2153143:-	INCL_NON_REF_SPLICE	YES	642	6579	0.04	0	0.032	0.2003	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.04	0.2323	TRUE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	3	29	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2680	0	0.01	1	0.024	0.2323	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.01	1	0.2563	FALSE	344	827	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	3	28	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	14	0	0.69	1	0.024	0.2243	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.69	1	0.2483	FALSE	344	826	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	3	28	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	6	0	0.84	1	0.024	0.2243	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.84	1	0.2483	FALSE	344	826	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	DAPK2--ARID1A	8	7	DAPK2	9208	chr15:64275732:-	ARID1A	35510	chr1:27087347:+	ONLY_REF_SPLICE	YES	6	86	0.71	0.15	0.0641	0.0561	DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2,ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+	RD_SOFT_TISSUE	0.15	0.71	0.1202	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	NRIP1--AF127936.7	9	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.0721	0.016	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RD_SOFT_TISSUE	0.85	1	0.0881	FALSE	292	1546	117	613	0	FALSE	ACH-000169
RD_SOFT_TISSUE	TANC1--DAPL1	3	24	TANC1	2259	chr2:159857701:+	DAPL1	46464	chr2:159718921:+	ONLY_REF_SPLICE	YES	104	0	0.21	1	0.024	0.1923	GTEx&tcga_normals:1/3694=0.03%,TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,DAPL1->chr2:159651829-159719293:+,death_associated_protein_like_1	RD_SOFT_TISSUE	0.21	1	0.2163	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	4	19	FLNC	24883	chr7:128498656:+	IGF2	39395	chr11:2152999:-	INCL_NON_REF_SPLICE	NO	694	7144	0.03	0	0.032	0.1522	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.03	0.1842	FALSE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	CDH13--RP11-22H5.2	8	1	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	120	0	0.07	1	0.0641	0.008	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	RD_SOFT_TISSUE	0.07	1	0.0721	FALSE	14	31	0	36	0	FALSE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	6	9	FLNC	24845	chr7:128498618:+	IGF2	39338	chr11:2153056:-	INCL_NON_REF_SPLICE	YES	561	6794	0.03	0	0.0481	0.0721	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.03	0.1202	TRUE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	4	17	FLNC	24896	chr7:128498669:+	IGF2	39425	chr11:2152969:-	INCL_NON_REF_SPLICE	YES	662	7054	0.03	0	0.032	0.1362	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.03	0.1682	TRUE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	3	21	FLNC	24872	chr7:128498645:+	IGF2	39323	chr11:2153071:-	INCL_NON_REF_SPLICE	YES	636	6615	0.04	0	0.024	0.1682	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.04	0.1922	TRUE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND6--MT-TE	4	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.1362	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RD_SOFT_TISSUE	1	1	0.1682	FALSE	499	1288	110	792	0	FALSE	ACH-000169
RD_SOFT_TISSUE	HSP90AB1--MT-RNR2	8	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0641	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RD_SOFT_TISSUE	1	1	0.0641	FALSE	13	9	0	364	0	FALSE	ACH-000169
RD_SOFT_TISSUE	NRIP1--AF127936.7	7	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	24	0	0.31	1	0.0561	0.032	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RD_SOFT_TISSUE	0.31	1	0.0881	FALSE	164	806	69	479	0	FALSE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	4	15	PTPLAD1	18266	chr15:65869815:+	IGF2	32638	chr11:2153339:-	INCL_NON_REF_SPLICE	NO	271	3495	0.07	0.01	0.032	0.1202	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0.01	0.07	0.1522	FALSE	0	0	0	4	0	FALSE	ACH-000169
RD_SOFT_TISSUE	TANC1--DAPL1	6	7	TANC1	1149	chr2:159825294:+	DAPL1	46461	chr2:159718918:+	INCL_NON_REF_SPLICE	YES	77	0	0.14	1	0.0481	0.0561	GTEx&tcga_normals:1/3694=0.03%,TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,DAPL1->chr2:159651829-159719293:+,death_associated_protein_like_1	RD_SOFT_TISSUE	0.14	1	0.1042	TRUE	0	1	0	1	1	TRUE	ACH-000169
RD_SOFT_TISSUE	SAMHD1--TRPS1	6	6	SAMHD1	1408	chr20:35579839:-	TRPS1	38917	chr8:116430680:-	ONLY_REF_SPLICE	YES	31	16	0.28	0.43	0.0481	0.0481	SAMHD1->SAM_and_HD_domain_containing_deoxynucleoside_triphosphate_triphosphohydrolase_1,chr20:35518632-35580246:-,TRPS1->chr8:116420724-116821899:-,transcriptional_repressor_GATA_binding_1	RD_SOFT_TISSUE	0.28	0.43	0.0962	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	MT-CO1--COL3A1	7	1	MT-CO1	1605	chrM:6508:+	COL3A1	28798	chr2:189872273:+	INCL_NON_REF_SPLICE	YES	10632	6674	0	0	0.0561	0.008	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	RD_SOFT_TISSUE	0	0	0.0641	FALSE	0	0	0	12	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND1--MT-TL1	3	17	MT-ND1	1090	chrM:3396:+	MT-TL1	4984	chrM:3257:+	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.024	0.1362	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	RD_SOFT_TISSUE	0.91	1	0.1602	FALSE	210	95	5	49	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-TA--MT-TC	5	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0.0721	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RD_SOFT_TISSUE	1	1	0.1122	FALSE	462	80	0	856	0	FALSE	ACH-000169
RD_SOFT_TISSUE	NCL--TNNT1	7	1	NCL	6884	chr2:232325380:-	TNNT1	20719	chr19:55656933:-	ONLY_REF_SPLICE	YES	2583	1109	0	0.01	0.0561	0.008	NCL->chr2:232318242-232348352:-,nucleolin,TNNT1->chr19:55644162-55660722:-,troponin_T1,_slow_skeletal_type	RD_SOFT_TISSUE	0	0.01	0.0641	FALSE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND6--MT-TE	4	12	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.0961	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RD_SOFT_TISSUE	1	1	0.1281	FALSE	499	1288	110	792	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-TL1--MT-RNR2	7	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0561	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RD_SOFT_TISSUE	1	1	0.0561	FALSE	7	521	16	32	0	FALSE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	3	15	FLNC	24866	chr7:128498639:+	IGF2	39420	chr11:2152974:-	INCL_NON_REF_SPLICE	YES	650	7103	0.03	0	0.024	0.1202	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.03	0.1442	TRUE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	4	11	FLNC	24845	chr7:128498618:+	IGF2	39230	chr11:2153164:-	INCL_NON_REF_SPLICE	YES	561	6486	0.03	0	0.032	0.0881	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.03	0.1201	TRUE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND6--MT-TE	3	15	MT-ND6	1332	chrM:14342:-	MT-TE	4567	chrM:14701:-	INCL_NON_REF_SPLICE	YES	2	0	0.9	1	0.024	0.1202	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RD_SOFT_TISSUE	0.9	1	0.1442	FALSE	499	1288	110	792	0	FALSE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	3	15	PTPLAD1	18275	chr15:65869824:+	IGF2	32614	chr11:2153363:-	INCL_NON_REF_SPLICE	NO	273	2973	0.06	0.01	0.024	0.1202	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0.01	0.06	0.1442	FALSE	0	0	0	4	0	FALSE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	3	15	PTPLAD1	18265	chr15:65869814:+	IGF2	32670	chr11:2153307:-	INCL_NON_REF_SPLICE	YES	274	3762	0.06	0	0.024	0.1202	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.06	0.1442	TRUE	0	0	0	4	0	FALSE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	3	15	PTPLAD1	18266	chr15:65869815:+	IGF2	32640	chr11:2153337:-	INCL_NON_REF_SPLICE	YES	271	3452	0.06	0.01	0.024	0.1202	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0.01	0.06	0.1442	TRUE	0	0	0	4	0	FALSE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	3	15	PTPLAD1	18266	chr15:65869815:+	IGF2	32656	chr11:2153321:-	INCL_NON_REF_SPLICE	NO	271	3358	0.06	0.01	0.024	0.1202	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0.01	0.06	0.1442	FALSE	0	0	0	4	0	FALSE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	6	2	FLNC	20524	chr7:128494094:+	IGF2	39585	chr11:2152809:-	INCL_NON_REF_SPLICE	NO	758	7400	0.01	0	0.0481	0.016	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.01	0.0641	FALSE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	LRP11--FSD1	3	14	LRP11	3823	chr6:150174130:-	FSD1	16042	chr19:4305943:+	INCL_NON_REF_SPLICE	YES	25	33	0.4	0.34	0.024	0.1122	{Klijn_CCL:Lung=1},LRP11->LDL_receptor_related_protein_11,chr6:150139934-150186199:-,FSD1->chr19:4304597-4323840:+,fibronectin_type_III_and_SPRY_domain_containing_1	RD_SOFT_TISSUE	0.34	0.4	0.1362	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	CALM3--MT-ND4L	5	5	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1131	0	0.01	1	0.0401	0.0401	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.01	1	0.0802	FALSE	1	1	0	107	0	FALSE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	3	13	FLNC	24845	chr7:128498618:+	IGF2	39112	chr11:2153282:-	INCL_NON_REF_SPLICE	YES	561	4170	0.03	0	0.024	0.1041	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.03	0.1281	TRUE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	4	9	FLNC	24925	chr7:128498698:+	IGF2	39562	chr11:2152832:-	INCL_NON_REF_SPLICE	YES	758	7684	0.02	0	0.032	0.0721	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.02	0.1041	TRUE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND6--MT-TE	3	13	MT-ND6	1136	chrM:14538:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0.1041	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RD_SOFT_TISSUE	1	1	0.1281	FALSE	499	1288	110	792	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0.008	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RD_SOFT_TISSUE	1	1	0.0561	FALSE	462	80	0	856	0	FALSE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	5	5	PTPLAD1	18226	chr15:65869775:+	IGF2	32899	chr11:2153078:-	INCL_NON_REF_SPLICE	YES	199	6448	0.05	0	0.0401	0.0401	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.05	0.0802	FALSE	0	0	0	4	0	FALSE	ACH-000169
RD_SOFT_TISSUE	DAPK2--ARID1A	5	4	DAPK2	9116	chr15:64275824:-	ARID1A	35510	chr1:27087347:+	ONLY_REF_SPLICE	YES	4	86	0.69	0.09	0.0401	0.032	DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2,ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+	RD_SOFT_TISSUE	0.09	0.69	0.0721	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	3	12	FLNC	24838	chr7:128498611:+	IGF2	39155	chr11:2153239:-	INCL_NON_REF_SPLICE	YES	542	4845	0.03	0	0.024	0.0961	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.03	0.1201	TRUE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	3	12	FLNC	24845	chr7:128498618:+	IGF2	39159	chr11:2153235:-	INCL_NON_REF_SPLICE	YES	561	5027	0.03	0	0.024	0.0961	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.03	0.1201	TRUE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	3	12	FLNC	24925	chr7:128498698:+	IGF2	39541	chr11:2152853:-	INCL_NON_REF_SPLICE	YES	758	7499	0.02	0	0.024	0.0961	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.02	0.1201	TRUE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	LINC01036--LINC01037	6	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0481	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	RD_SOFT_TISSUE	1	1	0.0481	FALSE	0	24	0	62	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND6--MT-TE	3	12	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0.0961	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RD_SOFT_TISSUE	1	1	0.1201	FALSE	499	1288	110	792	0	FALSE	ACH-000169
RD_SOFT_TISSUE	RP11-120D5.1--MID1	5	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	48	0.82	0.16	0.0401	0.032	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RD_SOFT_TISSUE	0.16	0.82	0.0721	FALSE	16	356	14	466	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-TA--MT-TC	4	7	MT-TA	1063	chrM:5593:-	MT-TC	4102	chrM:5794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0.0561	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RD_SOFT_TISSUE	1	1	0.0881	FALSE	462	80	0	856	0	FALSE	ACH-000169
RD_SOFT_TISSUE	NRG1--NRG1-IT1	5	3	NRG1	2344	chr8:31498245:+	NRG1-IT1	37780	chr8:31996731:+	ONLY_REF_SPLICE	YES	4	0	0.67	1	0.0401	0.024	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+	RD_SOFT_TISSUE	0.67	1	0.0641	TRUE	0	3	0	4	3	TRUE	ACH-000169
RD_SOFT_TISSUE	IGF2--MT-ND4	4	5	IGF2	6476	chr11:2159713:-	MT-ND4	17662	chrM:10924:+	INCL_NON_REF_SPLICE	YES	304	3474	0.03	0	0.032	0.0401	IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	RD_SOFT_TISSUE	0	0.03	0.0721	FALSE	0	2	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	5	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0401	0.008	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	1	1	0.0481	FALSE	344	821	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	3	9	PTPLAD1	18264	chr15:65869813:+	IGF2	32975	chr11:2153002:-	INCL_NON_REF_SPLICE	YES	289	7044	0.04	0	0.024	0.0721	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.04	0.0961	FALSE	0	0	0	4	0	FALSE	ACH-000169
RD_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	5	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0401	0.008	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RD_SOFT_TISSUE	1	1	0.0481	FALSE	515	4851	409	746	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ATP6--MT-CO1	4	4	MT-ATP6	1558	chrM:9084:+	MT-CO1	5226	chrM:6448:+	INCL_NON_REF_SPLICE	YES	2017	11351	0	0	0.032	0.032	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RD_SOFT_TISSUE	0	0	0.064	FALSE	183	104	9	328	0	FALSE	ACH-000169
RD_SOFT_TISSUE	SPATA5L1--TMIGD2	1	16	SPATA5L1	9557	chr15:45709597:+	TMIGD2	16310	chr19:4298342:-	ONLY_REF_SPLICE	YES	11	0	0.61	1	0.008	0.1282	SPATA5L1->chr15:45694529-45713617:+,spermatogenesis_associated_5_like_1,TMIGD2->chr19:4292229-4302428:-,transmembrane_and_immunoglobulin_domain_containing_2	RD_SOFT_TISSUE	0.61	1	0.1362	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	3	7	FLNC	24847	chr7:128498620:+	IGF2	39401	chr11:2152993:-	INCL_NON_REF_SPLICE	YES	553	7007	0.02	0	0.024	0.0561	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.02	0.0801	FALSE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	3	7	FLNC	24841	chr7:128498614:+	IGF2	39436	chr11:2152958:-	INCL_NON_REF_SPLICE	YES	549	7115	0.02	0	0.024	0.0561	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.02	0.0801	FALSE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	NRIP1--AF127936.7	4	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.44	1	0.032	0.024	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RD_SOFT_TISSUE	0.44	1	0.056	FALSE	125	705	46	456	0	FALSE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	3	7	PTPLAD1	18254	chr15:65869803:+	IGF2	32878	chr11:2153099:-	INCL_NON_REF_SPLICE	YES	224	6451	0.04	0	0.024	0.0561	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.04	0.0801	FALSE	0	0	0	4	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ATP6--MT-CO1	4	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8154	12970	0	0	0.032	0.016	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RD_SOFT_TISSUE	0	0	0.048	FALSE	183	104	9	328	0	FALSE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	3	6	PTPLAD1	18246	chr15:65869795:+	IGF2	32770	chr11:2153207:-	INCL_NON_REF_SPLICE	NO	213	5817	0.04	0	0.024	0.0481	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.04	0.0721	FALSE	0	0	0	4	0	FALSE	ACH-000169
RD_SOFT_TISSUE	ARFGEF2--NFS1	4	1	ARFGEF2	9495	chr20:47585814:+	NFS1	52545	chr20:34269903:-	ONLY_REF_SPLICE	YES	45	51	0.1	0.09	0.032	0.008	ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+,NFS1->NFS1_cysteine_desulfurase,chr20:34255977-34287281:-	RD_SOFT_TISSUE	0.09	0.1	0.04	TRUE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	CALR--NCL	4	1	CALR	4955	chr19:13054671:+	NCL	13394	chr2:232326457:-	INCL_NON_REF_SPLICE	NO	1696	2801	0	0	0.032	0.008	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,CALR->calreticulin,chr19:13049392-13055303:+,NCL->chr2:232318242-232348352:-,nucleolin	RD_SOFT_TISSUE	0	0	0.04	FALSE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	CDH13--RP11-22H5.2	4	1	CDH13	5791	chr16:82738771:+	RP11-22H5.2	41963	chr16:82862870:+	INCL_NON_REF_SPLICE	YES	142	0	0.03	1	0.032	0.008	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	RD_SOFT_TISSUE	0.03	1	0.04	FALSE	0	1	0	4	0	FALSE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	3	5	FLNC	24870	chr7:128498643:+	IGF2	39616	chr11:2152778:-	INCL_NON_REF_SPLICE	YES	642	6600	0.01	0	0.024	0.0401	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.01	0.0641	FALSE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ATP6--MT-CO1	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	6770	10635	0	0	0.032	0.008	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RD_SOFT_TISSUE	0	0	0.04	FALSE	183	104	9	328	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ATP6--MT-CO1	3	5	MT-ATP6	1555	chrM:9081:+	MT-CO1	4998	chrM:6220:+	INCL_NON_REF_SPLICE	YES	2399	11061	0	0	0.024	0.0401	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RD_SOFT_TISSUE	0	0	0.0641	FALSE	183	104	9	328	0	FALSE	ACH-000169
RD_SOFT_TISSUE	COL19A1--DNM3OS	4	0	COL19A1	15565	chr6:70672762:+	DNM3OS	57397	chr1:172113577:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	COL19A1->Oncogene{Bushman},chr6:70576463-70919679:+,collagen_type_XIX_alpha_1,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	RD_SOFT_TISSUE	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	IGF2--MT-ND4	3	4	IGF2	6449	chr11:2159740:-	MT-ND4	17634	chrM:10896:+	INCL_NON_REF_SPLICE	YES	763	2181	0.01	0	0.024	0.032	IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	RD_SOFT_TISSUE	0	0.01	0.056	FALSE	0	2	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	KANSL1--ARL17B	3	4	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	51	49	0.12	0.12	0.024	0.032	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	RD_SOFT_TISSUE	0.12	0.12	0.056	TRUE	105	90	7	93	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RD_SOFT_TISSUE	1	1	0.032	FALSE	499	1288	110	792	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RD_SOFT_TISSUE	1	1	0.032	FALSE	499	1288	110	792	0	FALSE	ACH-000169
RD_SOFT_TISSUE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.032	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RD_SOFT_TISSUE	1	1	0.032	TRUE	0	0	0	434	0	FALSE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	3	3	FLNC	24841	chr7:128498614:+	IGF2	39584	chr11:2152810:-	INCL_NON_REF_SPLICE	YES	549	7379	0.01	0	0.024	0.024	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.01	0.048	FALSE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	FLNC--IGF2	3	3	FLNC	24845	chr7:128498618:+	IGF2	39587	chr11:2152807:-	INCL_NON_REF_SPLICE	YES	561	7405	0.01	0	0.024	0.024	FLNC->chr7:128470431-128499328:+,filamin_C,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.01	0.048	FALSE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	KIF1B--UBE4B	3	3	KIF1B	4353	chr1:10292492:+	UBE4B	94456	chr1:10228194:+	ONLY_REF_SPLICE	YES	61	104	0.09	0.05	0.024	0.024	YOSHIHARA_TCGA_num_samples[GBM:1|KIRC:1],LOCAL_REARRANGEMENT:+:[29566],KIF1B->chr1:10270863-10441661:+,kinesin_family_member_1B,UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B	RD_SOFT_TISSUE	0.05	0.09	0.048	TRUE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	KIF1B--UBE4B	1	11	KIF1B	11365	chr1:10332364:+	UBE4B	65983	chr1:10132086:+	ONLY_REF_SPLICE	YES	107	90	0.1	0.12	0.008	0.0881	YOSHIHARA_TCGA_num_samples[GBM:1|KIRC:1],LOCAL_REARRANGEMENT:+:[29566],KIF1B->chr1:10270863-10441661:+,kinesin_family_member_1B,UBE4B->chr1:10092890-10241297:+,ubiquitination_factor_E4B	RD_SOFT_TISSUE	0.1	0.12	0.0961	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	MT-ATP6--MT-CO1	3	3	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	3941	11305	0	0	0.024	0.024	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RD_SOFT_TISSUE	0	0	0.048	FALSE	183	104	9	328	0	FALSE	ACH-000169
RD_SOFT_TISSUE	PRR16--CTD-2334D19.1	3	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	56	0	0.1	1	0.024	0.024	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	RD_SOFT_TISSUE	0.1	1	0.048	FALSE	56	216	12	147	0	FALSE	ACH-000169
RD_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0.024	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RD_SOFT_TISSUE	1	1	0.048	FALSE	407	2205	196	549	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1189	chrM:8715:+	MT-CO1	5220	chrM:6442:+	INCL_NON_REF_SPLICE	YES	8871	11283	0	0	0.024	0.016	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RD_SOFT_TISSUE	0	0	0.04	FALSE	183	104	9	328	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	7699	11362	0	0	0.024	0.016	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RD_SOFT_TISSUE	0	0	0.04	FALSE	183	104	9	328	0	FALSE	ACH-000169
RD_SOFT_TISSUE	CALR--NCL	3	1	CALR	4963	chr19:13054679:+	NCL	14285	chr2:232325566:-	INCL_NON_REF_SPLICE	YES	1641	3531	0	0	0.024	0.008	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,CALR->calreticulin,chr19:13049392-13055303:+,NCL->chr2:232318242-232348352:-,nucleolin	RD_SOFT_TISSUE	0	0	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	CALR--NCL	3	1	CALR	4949	chr19:13054665:+	NCL	13409	chr2:232326442:-	INCL_NON_REF_SPLICE	NO	1681	2751	0	0	0.024	0.008	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,CALR->calreticulin,chr19:13049392-13055303:+,NCL->chr2:232318242-232348352:-,nucleolin	RD_SOFT_TISSUE	0	0	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	CALR--NCL	3	1	CALR	4955	chr19:13054671:+	NCL	13403	chr2:232326448:-	INCL_NON_REF_SPLICE	NO	1696	2828	0	0	0.024	0.008	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,CALR->calreticulin,chr19:13049392-13055303:+,NCL->chr2:232318242-232348352:-,nucleolin	RD_SOFT_TISSUE	0	0	0.032	FALSE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	DSCR3--TTC3	3	1	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	39	134	0.09	0.03	0.024	0.008	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	RD_SOFT_TISSUE	0.03	0.09	0.032	TRUE	0	9	0	44	1	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1447	chrM:8973:+	MT-CO1	5363	chrM:6585:+	INCL_NON_REF_SPLICE	YES	6719	13360	0	0	0.024	0.008	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RD_SOFT_TISSUE	0	0	0.032	FALSE	183	104	9	328	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	YES	6616	11019	0	0	0.024	0.008	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RD_SOFT_TISSUE	0	0	0.032	FALSE	183	104	9	328	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ATP6--MT-CO1	3	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	6770	12651	0	0	0.024	0.008	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RD_SOFT_TISSUE	0	0	0.032	FALSE	183	104	9	328	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	3	1	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0.008	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	1	1	0.032	FALSE	344	821	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND4--MT-ND4L	3	1	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.024	0.008	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RD_SOFT_TISSUE	0.8	1	0.032	FALSE	344	821	44	306	0	FALSE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	3	1	PTPLAD1	18228	chr15:65869777:+	IGF2	33046	chr11:2152931:-	INCL_NON_REF_SPLICE	YES	203	7251	0.02	0	0.024	0.008	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.02	0.032	FALSE	0	0	0	4	0	FALSE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	3	1	PTPLAD1	18240	chr15:65869789:+	IGF2	33112	chr11:2152865:-	INCL_NON_REF_SPLICE	NO	217	7407	0.02	0	0.024	0.008	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	0	0.02	0.032	FALSE	0	0	0	4	0	FALSE	ACH-000169
RD_SOFT_TISSUE	MT-ND1--MT-TL1	3	0	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	RD_SOFT_TISSUE	1	1	0.024	FALSE	210	95	5	49	0	FALSE	ACH-000169
RD_SOFT_TISSUE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RD_SOFT_TISSUE	1	1	0.024	TRUE	0	0	0	434	0	FALSE	ACH-000169
RD_SOFT_TISSUE	PTPLAD1--IGF2	3	0	PTPLAD1	18228	chr15:65869777:+	IGF2	33170	chr11:2152807:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.024	0	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RD_SOFT_TISSUE	1	1	0.024	TRUE	0	0	0	4	0	TRUE	ACH-000169
RD_SOFT_TISSUE	VAPB--GNAS	3	0	VAPB	1396	chr20:56964573:+	GNAS	36861	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.024	0	VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	RD_SOFT_TISSUE	1	1	0.024	TRUE	0	3	0	7	1	TRUE	ACH-000169
RD_SOFT_TISSUE	COL4A2--CUL4A	2	1	COL4A2	30895	chr13:111132737:+	CUL4A	71163	chr13:113917801:+	ONLY_REF_SPLICE	YES	401	143	0.01	0.02	0.016	0.008	COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2,CUL4A->chr13:113862552-113919399:+,cullin_4A	RD_SOFT_TISSUE	0.01	0.02	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	XRN2--PLK1S1	2	1	XRN2	1170	chr20:21284111:+	PLK1S1	36437	chr20:21195173:+	ONLY_REF_SPLICE	YES	201	25	0.01	0.11	0.016	0.008	LOCAL_REARRANGEMENT:+:[56682],XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+,PLK1S1->Oncogene{Bushman},chr20:21106624-21227260:+	RD_SOFT_TISSUE	0.01	0.11	0.024	FALSE	1	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	CDC37--TIMM44	2	0	CDC37	7882	chr19:10503762:-	TIMM44	22470	chr19:7993051:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,TIMM44->chr19:7991603-8008805:-,translocase_of_inner_mitochondrial_membrane_44	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	47891	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	RD_SOFT_TISSUE	1	1	0.016	TRUE	1	3	0	10	0	TRUE	ACH-000169
RD_SOFT_TISSUE	CPQ--SDC2	2	0	CPQ	1176	chr8:97657630:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	RD_SOFT_TISSUE	1	1	0.016	TRUE	1	37	5	9	9	TRUE	ACH-000169
RD_SOFT_TISSUE	EHBP1--LINC00667	2	0	EHBP1	10472	chr2:63058293:+	LINC00667	42821	chr18:5241698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	EHBP1->EH_domain_binding_protein_1,chr2:62900986-63273622:+,LINC00667->chr18:5232875-5246507:+,long_intergenic_non-protein_coding_RNA_667	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	LEMD3--IRAK3	2	0	LEMD3	2548	chr12:65564898:+	IRAK3	21199	chr12:66597491:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	LEMD3->LEM_domain_containing_3,chr12:65563351-65642107:+,IRAK3->chr12:66582659-66648402:+,interleukin_1_receptor_associated_kinase_3	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	LINC01036--LINC01037	2	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	RD_SOFT_TISSUE	1	1	0.016	FALSE	0	26	0	50	0	FALSE	ACH-000169
RD_SOFT_TISSUE	OSBPL9--RP11-230B22.1	2	0	OSBPL9	16325	chr1:52215867:+	RP11-230B22.1	39730	chr1:63175309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	OSBPL9->chr1:52042851-52254889:+,oxysterol_binding_protein_like_9,RP11-230B22.1->chr1:63154153-63176365:+	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	PCM1--PSD3	2	0	PCM1	1349	chr8:17780697:+	PSD3	79251	chr8:18432795:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1,PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	RP11-120D5.1--MID1	1	4	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	48	0.83	0.09	0.008	0.032	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RD_SOFT_TISSUE	0.09	0.83	0.04	FALSE	2	31	0	60	0	FALSE	ACH-000169
RD_SOFT_TISSUE	SCRIB--CYHR1	2	0	SCRIB	5901	chr8:144892649:-	CYHR1	30472	chr8:145678843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	SCRIB->chr8:144873090-144897549:-,scribbled_planar_cell_polarity_protein,CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	SETD2--RBM6	2	0	SETD2	1114	chr3:47205344:-	RBM6	47637	chr3:50085678:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},SETD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SET_domain_containing_2,chr3:47057919-47205457:-,RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	SH3RF3--IFI16	2	0	SH3RF3	3042	chr2:109964405:+	IFI16	30317	chr1:159015087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	SH3RF3->SH3_domain_containing_ring_finger_3,chr2:109745804-110262207:+,IFI16->chr1:158969758-159024945:+,interferon_gamma_inducible_protein_16	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	SPOP--LUC7L3	2	0	SPOP	1302	chr17:47755295:-	LUC7L3	27028	chr17:48814321:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,LUC7L3->LUC7_like_3_pre-mRNA_splicing_factor,chr17:48796905-48833574:+	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	SPPL3--TCTN2	2	0	SPPL3	5980	chr12:121248612:-	TCTN2	35472	chr12:124189079:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	SPPL3->Oncogene{Bushman},chr12:121200313-121342174:-,signal_peptide_peptidase_like_3,TCTN2->chr12:124155660-124192948:+,tectonic_family_member_2	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	TMEM126B--C11orf73	2	0	TMEM126B	1104	chr11:85339732:+	C11orf73	14516	chr11:86048421:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	TMEM126B->chr11:85339629-85347580:+,transmembrane_protein_126B,C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	VAPB--GNAS	2	0	VAPB	3372	chr20:56993419:+	GNAS	36861	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.016	0	VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	RD_SOFT_TISSUE	1	1	0.016	TRUE	0	5	0	4	0	TRUE	ACH-000169
RD_SOFT_TISSUE	NRG1--NRG1-IT1	1	3	NRG1	2344	chr8:31498245:+	NRG1-IT1	30006	chr8:31886895:+	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.008	0.024	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT1->NRG1_intronic_transcript_1,chr8:31883735-31996991:+	RD_SOFT_TISSUE	0.5	1	0.032	TRUE	1	0	0	3	0	TRUE	ACH-000169
RD_SOFT_TISSUE	PRR16--CTD-2334D19.1	1	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	56	0	0.07	1	0.008	0.024	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	RD_SOFT_TISSUE	0.07	1	0.032	FALSE	1	13	0	24	0	FALSE	ACH-000169
RD_SOFT_TISSUE	CRIM1--FEZ2	1	2	CRIM1	11742	chr2:36706837:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	NO	290	239	0.01	0.01	0.008	0.016	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	RD_SOFT_TISSUE	0.01	0.01	0.024	FALSE	0	0	0	2	0	FALSE	ACH-000169
RD_SOFT_TISSUE	E2F5--PDE4DIP	1	2	E2F5	2542	chr8:86100031:+	PDE4DIP	44361	chr1:144917932:-	ONLY_REF_SPLICE	YES	11	40	0.21	0.07	0.008	0.016	{Klijn_CCL:Lung=1},E2F5->E2F_transcription_factor_5,chr8:86089460-86129387:+,PDE4DIP->Oncogene{Bushman},chr1:144836157-145076186:-,phosphodiesterase_4D_interacting_protein	RD_SOFT_TISSUE	0.07	0.21	0.024	TRUE	0	0	0	1	0	TRUE	ACH-000169
RD_SOFT_TISSUE	KANSL1--ARL17B	1	2	KANSL1	9741	chr17:44171926:-	ARL17B	40066	chr17:44388641:-	ONLY_REF_SPLICE	YES	57	5	0.05	0.38	0.008	0.016	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	RD_SOFT_TISSUE	0.05	0.38	0.024	TRUE	13	9	0	5	0	FALSE	ACH-000169
RD_SOFT_TISSUE	ANKRD27--NUDT19	1	1	ANKRD27	26423	chr19:33095169:-	NUDT19	36205	chr19:33200091:+	ONLY_REF_SPLICE	YES	51	19	0.04	0.1	0.008	0.008	LOCAL_INVERSION:-:+:[15364],ANKRD27->ankyrin_repeat_domain_27,chr19:33087913-33167503:-,NUDT19->chr19:33182867-33204702:+,nudix_hydrolase_19	RD_SOFT_TISSUE	0.04	0.1	0.016	TRUE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	BNC2--C9orf92	1	1	BNC2	9814	chr9:16552528:-	C9orf92	33426	chr9:16215897:-	ONLY_REF_SPLICE	YES	10	0	0.17	1	0.008	0.008	GTEx_FI:{Esophagus=[count:2=pct:0.5],Lung=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},BNC2->basonuclin_2,chr9:16409501-16870841:-,C9orf92->chr9:16203933-16276311:-,chromosome_9_open_reading_frame_92	RD_SOFT_TISSUE	0.17	1	0.016	TRUE	3	8	0	3	0	FALSE	ACH-000169
RD_SOFT_TISSUE	CDH13--RP11-22H5.2	1	1	CDH13	9210	chr16:82892078:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	266	0	0.01	1	0.008	0.008	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	RD_SOFT_TISSUE	0.01	1	0.016	FALSE	0	2	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	CDH13--RP11-22H5.2	1	1	CDH13	7013	chr16:82753080:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	143	0	0.01	1	0.008	0.008	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	RD_SOFT_TISSUE	0.01	1	0.016	FALSE	1	1	0	8	0	FALSE	ACH-000169
RD_SOFT_TISSUE	EDF1--COL5A1	1	1	EDF1	3072	chr9:139757358:-	COL5A1	45683	chr9:137693800:+	ONLY_REF_SPLICE	YES	521	392	0	0.01	0.008	0.008	{Klijn_CCL:Lung=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1	RD_SOFT_TISSUE	0	0.01	0.016	FALSE	0	0	0	2	0	FALSE	ACH-000169
RD_SOFT_TISSUE	FLJ27365--EEF1D	1	1	FLJ27365	5193	chr22:46494438:+	EEF1D	27655	chr8:144669022:-	ONLY_REF_SPLICE	YES	2	241	0.5	0.01	0.008	0.008	FLJ27365->chr22:46449749-46509808:+,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	RD_SOFT_TISSUE	0.01	0.5	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	RP11-134O21.1--PPP2R2A	1	1	RP11-134O21.1	8335	chr8:2532238:-	PPP2R2A	22380	chr8:26211984:+	ONLY_REF_SPLICE	YES	15	157	0.12	0.01	0.008	0.008	RP11-134O21.1->chr8:2523591-2585991:-,PPP2R2A->chr8:26149007-26230196:+,protein_phosphatase_2_regulatory_subunit_B,_alpha	RD_SOFT_TISSUE	0.01	0.12	0.016	FALSE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	RP11-622K12.1--KDM6A	1	1	RP11-622K12.1	2468	chrX:56758632:+	KDM6A	9007	chrX:44820529:+	ONLY_REF_SPLICE	YES	109	9	0.02	0.18	0.008	0.008	RP11-622K12.1->chrX:56755692-56844813:+,KDM6A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:44732757-44971847:+,lysine_demethylase_6A	RD_SOFT_TISSUE	0.02	0.18	0.016	TRUE	0	0	0	1	0	FALSE	ACH-000169
RD_SOFT_TISSUE	SLMAP--APPL1	1	1	SLMAP	18145	chr3:57882659:+	APPL1	45478	chr3:57276884:+	ONLY_REF_SPLICE	YES	45	74	0.04	0.03	0.008	0.008	SLMAP->chr3:57741177-57914895:+,sarcolemma_associated_protein,APPL1->adaptor_protein,_phosphotyrosine_interacting_with_PH_domain_and_leucine_zipper_1,chr3:57261765-57307496:+	RD_SOFT_TISSUE	0.03	0.04	0.016	TRUE	0	0	0	1	0	FALSE	ACH-000169
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	88	44	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0845	0.5423	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.6268	TRUE	508	994	45	981	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	53	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	152	5	0.27	0.92	0.6532	0.0493	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.92	0.7025	TRUE	519	3926	326	965	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	36	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4437	0.0123	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.456	FALSE	462	80	0	856	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	33	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4067	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4067	TRUE	0	0	0	518	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	13	45	AC131097.3	2273	chr2:242824786:+	AC093642.5	11670	chr2:243037038:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1602	0.5546	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7148	FALSE	3	20	2	16	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	16	31	AC131097.3	2273	chr2:242824786:+	AC093642.5	12811	chr2:243056790:+	ONLY_REF_SPLICE	YES	0	38	1	0.55	0.1972	0.3821	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	1	0.5793	FALSE	2	37	1	16	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	54	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	10	0	0.85	1	0.0493	0.6655	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.7148	FALSE	344	826	44	306	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	56	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	12	0	0.83	1	0.037	0.6902	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.7272	FALSE	344	826	44	306	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	55	MT-ND4	1155	chrM:10914:+	MT-ND4L	5512	chrM:10603:+	INCL_NON_REF_SPLICE	NO	10	0	0.85	1	0.037	0.6778	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.7148	FALSE	344	826	44	306	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	48	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	NO	4932	0	0.01	1	0.0493	0.5916	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.6409	FALSE	344	827	44	306	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	42	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.0616	0.5176	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.5792	FALSE	344	821	44	306	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	44	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	34	0	0.59	1	0.0493	0.5423	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.5916	FALSE	344	827	44	306	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXO11--AC073283.4	14	3	FBXO11	1305	chr2:48132628:-	AC073283.4	33269	chr2:47448462:-	ONLY_REF_SPLICE	YES	5	0	0.77	1	0.1725	0.037	FBXO11->F-box_protein_11,chr2:48016455-48132932:-,AC073283.4->chr2:47419544-47572213:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.2095	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	14	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1725	0.0123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1848	FALSE	499	1288	110	792	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXO11--AC073283.4	12	1	FBXO11	1305	chr2:48132628:-	AC073283.4	38202	chr2:47419956:-	ONLY_REF_SPLICE	YES	5	27	0.72	0.33	0.1479	0.0123	FBXO11->F-box_protein_11,chr2:48016455-48132932:-,AC073283.4->chr2:47419544-47572213:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.72	0.1602	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SECISBP2L--HMGB2	11	0	SECISBP2L	20495	chr15:49284746:-	HMGB2	30528	chr4:174253317:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1356	0	SECISBP2L->SECIS_binding_protein_2_like,chr15:49280673-49338760:-,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1356	TRUE	0	0	0	2	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHRF1--LRRC56	9	4	PHRF1	9811	chr11:601701:+	LRRC56	30876	chr11:553963:+	ONLY_REF_SPLICE	YES	71	6	0.15	0.68	0.1109	0.0493	LOCAL_REARRANGEMENT:+:[21570],PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,LRRC56->chr11:537527-554916:+,leucine_rich_repeat_containing_56	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.68	0.1602	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.79	1	0.1109	0.0246	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	0.1355	FALSE	499	1288	110	792	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1109	0.0123	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1232	FALSE	462	80	0	856	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1109	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1109	FALSE	13	9	0	364	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0986	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0986	FALSE	462	80	0	856	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	7	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0863	0.037	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1233	FALSE	292	1546	117	613	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0863	0.0123	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0986	FALSE	499	1288	110	792	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SECISBP2L--HMGB2	7	0	SECISBP2L	20486	chr15:49284755:-	HMGB2	30518	chr4:174253327:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0863	0	SECISBP2L->SECIS_binding_protein_2_like,chr15:49280673-49338760:-,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0863	TRUE	0	0	0	2	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	3	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	12	0	0.43	1	0.0739	0.037	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.1109	FALSE	344	826	44	306	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PFKL--MT-ND4L	6	2	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1003	0	0.01	1	0.0739	0.0246	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0985	FALSE	0	0	0	33	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	6	0	ZNF654	1688	chr3:88188941:+	HMGB2	12525	chr4:174253314:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0739	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0739	TRUE	0	0	0	518	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	2	15	AC131097.3	2273	chr2:242824786:+	AC093642.5	15104	chr2:243061116:+	ONLY_REF_SPLICE	YES	0	47	1	0.27	0.0246	0.1849	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	0.2095	FALSE	0	3	0	4	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	5	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	8	0	0.5	1	0.0616	0.037	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0986	FALSE	0	48	1	163	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	5	MT-ND4	1152	chrM:10911:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10	0	0.47	1	0.0493	0.0616	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	1	0.1109	FALSE	344	826	44	306	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	5	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0616	TRUE	0	5	1	24	1	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	4	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	0	0.57	1	0.0493	0.0493	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.0986	FALSE	16	356	14	466	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	7	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	12	0	0.45	1	0.037	0.0863	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.45	1	0.1233	FALSE	344	826	44	306	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0.037	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0863	FALSE	499	1288	110	792	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	27	0	0.25	1	0.037	0.0739	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	1	0.1109	FALSE	125	705	46	456	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	4	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	42	0	0.12	1	0.0493	0.0246	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.0739	FALSE	272	151	14	158	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	45	8	0.15	0.5	0.037	0.0616	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.5	0.0986	TRUE	267	562	48	632	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	5	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10	0	0.44	1	0.037	0.0616	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.0986	FALSE	344	826	44	306	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	4	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.037	0.0493	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	1	0.0863	FALSE	499	1288	110	792	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	2	7	AC131097.3	2273	chr2:242824786:+	AC093642.5	18598	chr2:243080935:+	ONLY_REF_SPLICE	YES	0	57	1	0.14	0.0246	0.0863	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.1109	FALSE	0	1	0	3	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-340A15.2--CTC-535M15.2	3	3	CTC-340A15.2	1501	chr5:163724202:+	CTC-535M15.2	32673	chr5:165204982:+	ONLY_REF_SPLICE	YES	102	0	0.06	1	0.037	0.037	CTC-340A15.2->chr5:163723702-164598649:+,CTC-535M15.2->chr5:164776036-165205694:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.074	TRUE	0	0	0	3	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	54	0	0.14	1	0.0246	0.0863	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.1109	FALSE	164	806	69	479	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-340A15.2--CTC-535M15.2	2	5	CTC-340A15.2	25965	chr5:164434418:+	CTC-535M15.2	32673	chr5:165204982:+	ONLY_REF_SPLICE	YES	10	0	0.41	1	0.0246	0.0616	CTC-340A15.2->chr5:163723702-164598649:+,CTC-535M15.2->chr5:164776036-165205694:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	1	0.0862	TRUE	0	0	0	2	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0.0616	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0862	FALSE	467	2173	244	435	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	3	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.037	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.037	TRUE	347	1186	183	220	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.037	FALSE	344	821	44	306	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.037	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.037	FALSE	499	1288	110	792	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHRF1--LRRC56	1	6	PHRF1	9811	chr11:601701:+	LRRC56	29742	chr11:552569:+	ONLY_REF_SPLICE	YES	71	8	0.09	0.47	0.0123	0.0739	LOCAL_REARRANGEMENT:+:[21570],PHRF1->PHD_and_ring_finger_domains_1,chr11:576486-612222:+,LRRC56->chr11:537527-554916:+,leucine_rich_repeat_containing_56	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.47	0.0862	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0123	0.0616	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0739	FALSE	515	4851	409	746	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP8A1--CENPC	2	0	ATP8A1	21565	chr4:42553215:-	CENPC	55007	chr4:68385220:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	ATP8A1->ATPase_phospholipid_transporting_8A1,chr4:42410390-42659122:-,CENPC->centromere_protein_C,chr4:68337521-68411324:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DICER1--VRK1	2	0	DICER1	23279	chr14:95572015:-	VRK1	46457	chr14:97321561:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	DICER1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:95552565-95624347:-,dicer_1,_ribonuclease_III,VRK1->Oncogene{Bushman},chr14:97263641-97398059:+,vaccinia_related_kinase_1	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EXD3--RABL6	2	0	EXD3	1149	chr9:140317566:-	RABL6	36936	chr9:139717977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	1	0	0	3	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA0319L--C11orf30	2	0	KIAA0319L	4118	chr1:36019951:-	C11orf30	48150	chr11:76224430:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	KIAA0319L->KIAA0319_like,chr1:35899091-36023551:-,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	27745	chr4:1232125:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	1	1	1	3	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	3	14	2	43	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRDE2--TDP1	2	0	NRDE2	1297	chr14:90798185:-	TDP1	44415	chr14:90485660:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	NRDE2->NRDE-2,_necessary_for_RNA_interference,_domain_containing,chr14:90742580-90798481:-,TDP1->chr14:90421283-90511106:+,tyrosyl-DNA_phosphodiesterase_1	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--PGAM5	2	0	PPP1R12C	7638	chr19:55614777:-	PGAM5	20968	chr12:133291444:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SSBP2--BACH2	2	0	SSBP2	1817	chr5:81046800:-	BACH2	38655	chr6:90916400:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2,BACH2->BTB_domain_and_CNC_homolog_2,Oncogene{Bushman},chr6:90636248-91006627:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	2	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	30164	chr10:75439864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	3	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAC2--TPP2	2	0	UBAC2	1166	chr13:99853193:+	TPP2	22182	chr13:103257143:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	GTEx&tcga_normals:1/3694=0.03%,UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,TPP2->chr13:103249353-103331521:+,tripeptidyl_peptidase_2	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBL3--SLC7A1	2	0	UBL3	2173	chr13:30423649:-	SLC7A1	14036	chr13:30127997:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	UBL3->Oncogene{Bushman},chr13:30338508-30424821:-,ubiquitin_like_3,SLC7A1->chr13:30083547-30169825:-,solute_carrier_family_7_member_1	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	1	5	0	8	1	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP9Y--ACAD11	2	0	USP9Y	8666	chrY:14838726:+	ACAD11	68155	chr3:132297725:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	USP9Y->chrY:14813160-14972764:+,ubiquitin_specific_peptidase_9,_Y-linked,ACAD11->acyl-CoA_dehydrogenase_family_member_11,chr3:132276982-132379567:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--CRK	2	0	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	6	50	7	115	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF445--SENP7	2	0	ZNF445	1080	chr3:44519083:-	SENP7	35342	chr3:101062798:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0246	0	ZNF445->chr3:44481262-44519162:-,zinc_finger_protein_445,SENP7->SUMO1/sentrin_specific_peptidase_7,chr3:101043049-101232085:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--CHMP1A	1	2	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	NO	237	173	0.01	0.02	0.0123	0.0246	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0369	FALSE	95	74	6	34	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MANBA--UBE2D3	1	2	MANBA	9780	chr4:103610731:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	YES	39	430	0.07	0.01	0.0123	0.0246	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.07	0.0369	FALSE	6	5	0	8	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--SRSF1	1	1	CHD2	6529	chr15:93444529:+	SRSF1	62155	chr17:56082402:-	ONLY_REF_SPLICE	YES	81	897	0.02	0	0.0123	0.0123	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0246	FALSE	1	2	0	9	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--SRSF1	1	1	CPSF6	11046	chr12:69656342:+	SRSF1	22199	chr17:56082402:-	ONLY_REF_SPLICE	NO	237	897	0.01	0	0.0123	0.0123	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0246	FALSE	2	7	0	12	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--STIM2	1	1	DANCR	1530	chr4:53579126:+	STIM2	7815	chr4:26859821:+	ONLY_REF_SPLICE	YES	533	170	0	0.01	0.0123	0.0123	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,STIM2->chr4:26859300-27027003:+,stromal_interaction_molecule_2	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXO11--AC073283.4	1	1	FBXO11	1305	chr2:48132628:-	AC073283.4	34784	chr2:47442398:-	ONLY_REF_SPLICE	YES	5	27	0.29	0.07	0.0123	0.0123	FBXO11->F-box_protein_11,chr2:48016455-48132932:-,AC073283.4->chr2:47419544-47572213:-	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.29	0.0246	TRUE	0	0	0	1	0	TRUE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRM--LRSAM1	1	1	NRM	3145	chr6:30657053:-	LRSAM1	30006	chr9:130258243:+	ONLY_REF_SPLICE	YES	322	28	0.01	0.07	0.0123	0.0123	NRM->chr6:30655824-30659197:-,nurim_(nuclear_envelope_membrane_protein),LRSAM1->chr9:130213765-130265780:+,leucine_rich_repeat_and_sterile_alpha_motif_containing_1	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.07	0.0246	FALSE	0	0	0	1	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPFIBP1--CCDC91	1	1	PPFIBP1	1935	chr12:27677298:+	CCDC91	57700	chr12:28458582:+	ONLY_REF_SPLICE	YES	49	64	0.04	0.03	0.0123	0.0123	PPFIBP1->Oncogene{Bushman},PPFIA_binding_protein_1,chr12:27676364-27848497:+,CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.0246	TRUE	0	0	0	1	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--ACSF2	1	1	PPP1R12C	8950	chr19:55610152:-	ACSF2	29133	chr17:48548389:+	ONLY_REF_SPLICE	NO	104	126	0.02	0.02	0.0123	0.0123	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,ACSF2->acyl-CoA_synthetase_family_member_2,chr17:48503519-48552206:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.0246	TRUE	0	1	0	1	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TPST1--GS1-124K5.4	1	1	TPST1	8006	chr7:65821858:+	GS1-124K5.4	15884	chr7:65960242:+	ONLY_REF_SPLICE	YES	51	7	0.04	0.22	0.0123	0.0123	NEIGHBORS[73163],TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,GS1-124K5.4->chr7:65958693-65960461:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.22	0.0246	FALSE	5	53	0	3	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TPST1--GS1-124K5.4	1	1	TPST1	5907	chr7:65751696:+	GS1-124K5.4	15884	chr7:65960242:+	ONLY_REF_SPLICE	YES	44	7	0.04	0.22	0.0123	0.0123	NEIGHBORS[73163],TPST1->chr7:65670186-65885530:+,tyrosylprotein_sulfotransferase_1,GS1-124K5.4->chr7:65958693-65960461:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.22	0.0246	FALSE	17	126	3	8	0	FALSE	ACH-000938
NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	24436	chr10:114650725:+	ONLY_REF_SPLICE	YES	42	0	0.05	1	0.0123	0.0123	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NALM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0246	FALSE	21	3	0	16	0	FALSE	ACH-000938
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	143	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.2316	0.2498	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.4814	TRUE	508	994	45	981	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	114	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9818	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9818	TRUE	0	0	0	518	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	87	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.7493	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7493	TRUE	519	3926	326	965	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	55	28	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	38778	chr9:22096371:+	ONLY_REF_SPLICE	YES	0	4	1	0.95	0.4737	0.2412	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.7149	FALSE	0	2	0	7	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	47	37	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	37616	chr9:22092307:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4048	0.3187	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7235	FALSE	0	2	0	5	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OR51S1--TP53I11	55	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4737	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4737	TRUE	402	216	10	229	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	36	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3101	0.0517	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3618	FALSE	462	80	0	856	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	34	12	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	39664	chr9:22097257:+	ONLY_REF_SPLICE	YES	0	14	1	0.77	0.2928	0.1034	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	1	0.3962	FALSE	0	2	0	7	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	34	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2928	0.0172	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.31	FALSE	416	2512	207	587	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	26	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2239	0.0086	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2325	FALSE	499	1288	110	792	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBA1B--PTMA	24	3	TUBA1B	4414	chr12:49521767:-	PTMA	13136	chr2:232577153:+	INCL_NON_REF_SPLICE	YES	1441	5988	0.02	0	0.2067	0.0258	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.2325	TRUE	0	0	0	4	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	23	4	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	40771	chr9:22112319:+	ONLY_REF_SPLICE	YES	0	9	1	0.75	0.1981	0.0345	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.2326	FALSE	0	5	0	7	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	14	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1206	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1206	TRUE	0	0	0	100	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0861	0.1034	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1895	FALSE	499	1288	110	792	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.112	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.112	TRUE	0	0	0	434	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	10	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0861	0.0431	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1292	FALSE	462	80	0	856	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	9	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0775	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0775	TRUE	22	156	2	142	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PFKL--MT-ND4L	7	6	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1681	0	0.01	1	0.0603	0.0517	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.112	FALSE	0	0	0	33	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0.0086	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0775	FALSE	499	1288	110	792	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	7	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.82	0.0603	0.0172	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.0775	FALSE	515	4851	409	746	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0.0947	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1292	FALSE	499	1288	110	792	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBA1B--PTMA	6	3	TUBA1B	4386	chr12:49521795:-	PTMA	12658	chr2:232576675:+	INCL_NON_REF_SPLICE	YES	2182	5518	0	0	0.0517	0.0258	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0775	FALSE	0	0	0	4	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0517	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0517	FALSE	462	80	0	856	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0517	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0517	FALSE	292	1546	117	613	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0258	0.0603	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0861	FALSE	462	80	0	856	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBA1B--PTMA	4	3	TUBA1B	4392	chr12:49521789:-	PTMA	12601	chr2:232576618:+	INCL_NON_REF_SPLICE	NO	2052	5833	0	0	0.0345	0.0258	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0603	FALSE	0	0	0	4	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0345	TRUE	0	0	0	434	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TUBA1B--PTMA	3	2	TUBA1B	4124	chr12:49522057:-	PTMA	9248	chr2:232573236:+	INCL_NON_REF_SPLICE	YES	4324	11	0	0.31	0.0258	0.0172	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.31	0.043	FALSE	0	0	0	3	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	57	0	0.11	1	0.0172	0.0431	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0603	FALSE	164	806	69	479	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DSCR3--TTC3	3	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	TRUE	0	9	0	44	1	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERG--TTC3	2	1	ERG	5568	chr21:39870287:-	TTC3	34150	chr21:38459547:+	ONLY_REF_SPLICE	YES	122	164	0.02	0.02	0.0172	0.0086	ERG->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:39751949-40033704:-,v-ets_avian_erythroblastosis_virus_E26_oncogene_homolog,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.0258	TRUE	0	0	0	1	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC144521.1--PMS1	2	0	AC144521.1	5648	chr3:18507531:+	PMS1	40353	chr2:190656516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	AC144521.1->chr3:18486516-18959184:+,PMS1->Oncogene{Bushman},PMS1_homolog_1,_mismatch_repair_system_component,chr2:190649107-190742355:+	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LPIN2--MYL12B	2	0	LPIN2	1229	chr18:3013085:-	MYL12B	32733	chr18:3272882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	LPIN2->chr18:2916992-3013313:-,lipin_2,MYL12B->chr18:3261907-3278282:+,myosin_light_chain_12B	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	1	0	4	0	TRUE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC23A2--PCNA	2	0	SLC23A2	6819	chr20:4883088:-	PCNA	31114	chr20:5098310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0172	0	SLC23A2->chr20:4833002-4990939:-,solute_carrier_family_23_member_2,PCNA->Oncogene{Bushman},chr20:5095599-5107272:-,proliferating_cell_nuclear_antigen	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0086	0.0172	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0258	FALSE	275	511	55	178	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DTYMK--ATG4B	1	1	DTYMK	1338	chr2:242626069:-	ATG4B	21075	chr2:242606060:+	ONLY_REF_SPLICE	NO	252	180	0.01	0.01	0.0086	0.0086	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[1885],DTYMK->chr2:242615157-242626406:-,deoxythymidylate_kinase,ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0172	FALSE	0	0	0	5	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPH3--SIRT1	1	1	HNRNPH3	5812	chr10:70099312:+	SIRT1	15921	chr10:69651160:+	ONLY_REF_SPLICE	YES	644	22	0	0.08	0.0086	0.0086	HNRNPH3->chr10:70090931-70102948:+,heterogeneous_nuclear_ribonucleoprotein_H3,SIRT1->Oncogene{Bushman},chr10:69644427-69678147:+,sirtuin_1	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--CCNL2	1	1	IGLL5	1480	chr22:23230439:+	CCNL2	13380	chr1:1326245:-	ONLY_REF_SPLICE	YES	258	164	0.01	0.01	0.0086	0.0086	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,CCNL2->chr1:1321091-1334708:-,cyclin_L2	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000020
MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPC1--TTC39C	1	1	NPC1	1612	chr18:21166251:-	TTC39C	41264	chr18:21644104:+	ONLY_REF_SPLICE	NO	160	58	0.01	0.03	0.0086	0.0086	NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-,TTC39C->chr18:21572737-21715574:+,tetratricopeptide_repeat_domain_39C	MHHCALL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000020
DU4475_BREAST	AC019118.3--AC019118.2	88	103	AC019118.3	1234	chr2:3149318:-	AC019118.2	8492	chr2:2970447:-	ONLY_REF_SPLICE	YES	39	3	0.83	0.98	1.0286	1.204	NEIGHBORS[5555],AC019118.3->chr2:3135353-3149551:-,AC019118.2->chr2:2898820-3129798:-	DU4475_BREAST	0.83	0.98	2.2326	FALSE	0	0	0	3	0	FALSE	ACH-000258
DU4475_BREAST	TIMM23B--LINC00843	97	49	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1338	0.5728	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DU4475_BREAST	0.99	1	1.7066	TRUE	508	994	45	981	0	FALSE	ACH-000258
DU4475_BREAST	TIMM23--RP11-464F9.1	63	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	416	9	0.14	0.89	0.7364	0.0818	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DU4475_BREAST	0.14	0.89	0.8182	TRUE	519	3926	326	965	0	FALSE	ACH-000258
DU4475_BREAST	RP11-353N4.6--RP11-403I13.8	46	27	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	192	4	0.28	0.95	0.5377	0.3156	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	DU4475_BREAST	0.28	0.95	0.8533	TRUE	6	2	0	8	0	FALSE	ACH-000258
DU4475_BREAST	PHACTR2--ZC2HC1B	41	36	PHACTR2	6210	chr6:144070202:+	ZC2HC1B	37541	chr6:144258786:+	ONLY_REF_SPLICE	YES	12	0	0.87	1	0.4792	0.4208	{Klijn_CCL:Breast=1},NEIGHBORS[33251],PHACTR2->chr6:143857982-144152322:+,phosphatase_and_actin_regulator_2,ZC2HC1B->chr6:144185573-144259483:+,zinc_finger_C2HC-type_containing_1B	DU4475_BREAST	0.87	1	0.9	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	NKD1--PAPD5	39	12	NKD1	2226	chr16:50583466:+	PAPD5	28629	chr16:50263063:+	ONLY_REF_SPLICE	YES	1526	16	0.03	0.76	0.4559	0.1403	NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,PAPD5->PAP_associated_domain_containing_5,chr16:50186829-50269221:+	DU4475_BREAST	0.03	0.76	0.5962	TRUE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	ZNF654--HMGB2	42	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4909	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	DU4475_BREAST	1	1	0.4909	TRUE	0	0	0	518	0	FALSE	ACH-000258
DU4475_BREAST	MT-TA--MT-TC	27	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3156	0.0234	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DU4475_BREAST	1	1	0.339	FALSE	462	80	0	856	0	FALSE	ACH-000258
DU4475_BREAST	AC019118.3--AC019118.2	1	103	AC019118.3	1234	chr2:3149318:-	AC019118.2	7131	chr2:3129427:-	ONLY_REF_SPLICE	YES	39	6	0.73	0.95	0.0117	1.204	NEIGHBORS[5555],AC019118.3->chr2:3135353-3149551:-,AC019118.2->chr2:2898820-3129798:-	DU4475_BREAST	0.73	0.95	1.2157	FALSE	0	0	0	2	0	FALSE	ACH-000258
DU4475_BREAST	AC019118.3--AC019118.2	1	103	AC019118.3	1234	chr2:3149318:-	AC019118.2	7348	chr2:3129210:-	ONLY_REF_SPLICE	YES	39	6	0.73	0.95	0.0117	1.204	NEIGHBORS[5555],AC019118.3->chr2:3135353-3149551:-,AC019118.2->chr2:2898820-3129798:-	DU4475_BREAST	0.73	0.95	1.2157	FALSE	0	0	0	2	0	FALSE	ACH-000258
DU4475_BREAST	ASH1L--RIT1	22	13	ASH1L	20035	chr1:155330092:-	RIT1	43368	chr1:155870409:-	ONLY_REF_SPLICE	YES	98	139	0.26	0.2	0.2572	0.152	{Klijn_CCL:Breast=1},ASH1L->ash1_(absent,_small,_or_homeotic)-like_(Drosophila),chr1:155305059-155532598:-,RIT1->Ras-like_without_CAAX_1,chr1:155867599-155881195:-	DU4475_BREAST	0.2	0.26	0.4092	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	NPM1P24--SET	18	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2104	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	DU4475_BREAST	1	1	0.2104	TRUE	0	0	0	434	0	FALSE	ACH-000258
DU4475_BREAST	MT-ND5--MT-ND4	3	59	MT-ND5	2782	chrM:14118:+	MT-ND4	5918	chrM:10865:+	INCL_NON_REF_SPLICE	YES	0	492	1	0.11	0.0351	0.6896	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	DU4475_BREAST	0.11	1	0.7247	FALSE	29	25	1	23	0	FALSE	ACH-000258
DU4475_BREAST	MT-ND5--MT-ND4	3	57	MT-ND5	2800	chrM:14136:+	MT-ND4	5942	chrM:10889:+	INCL_NON_REF_SPLICE	YES	0	2784	1	0.02	0.0351	0.6663	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	DU4475_BREAST	0.02	1	0.7014	FALSE	29	25	1	23	0	FALSE	ACH-000258
DU4475_BREAST	MT-ND5--MT-ND4	3	57	MT-ND5	2813	chrM:14149:+	MT-ND4	5957	chrM:10904:+	INCL_NON_REF_SPLICE	NO	0	4102	1	0.01	0.0351	0.6663	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	DU4475_BREAST	0.01	1	0.7014	FALSE	29	25	1	23	0	FALSE	ACH-000258
DU4475_BREAST	RP11-680G10.1--GSE1	16	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	205	1	0.08	0.187	0.0234	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DU4475_BREAST	0.08	1	0.2104	TRUE	465	1949	224	605	0	FALSE	ACH-000258
DU4475_BREAST	MT-ND5--MT-ND4	14	5	MT-ND5	2112	chrM:13448:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	9743	14038	0	0	0.1636	0.0584	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	DU4475_BREAST	0	0	0.222	FALSE	47	29	1	25	0	FALSE	ACH-000258
DU4475_BREAST	MT-ND5--MT-ND4	6	36	MT-ND5	2667	chrM:14003:+	MT-ND4	6019	chrM:10966:+	INCL_NON_REF_SPLICE	YES	1641	9953	0.02	0	0.0701	0.4208	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	DU4475_BREAST	0	0.02	0.4909	FALSE	29	25	1	23	0	FALSE	ACH-000258
DU4475_BREAST	MT-ND5--MT-ND4	3	46	MT-ND5	2721	chrM:14057:+	MT-ND4	5917	chrM:10864:+	INCL_NON_REF_SPLICE	YES	5	424	0.91	0.1	0.0351	0.5377	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	DU4475_BREAST	0.1	0.91	0.5728	FALSE	29	25	1	23	0	FALSE	ACH-000258
DU4475_BREAST	MT-ND5--MT-ND4	5	36	MT-ND5	2667	chrM:14003:+	MT-ND4	6040	chrM:10987:+	INCL_NON_REF_SPLICE	YES	1641	10824	0.02	0	0.0584	0.4208	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	DU4475_BREAST	0	0.02	0.4792	FALSE	46	27	1	23	0	FALSE	ACH-000258
DU4475_BREAST	AC073342.12--KEL	13	3	AC073342.12	3786	chr7:142952392:-	KEL	6939	chr7:142659651:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.152	0.0351	GTEx_FI:{Brain=[count:3=pct:0.5]},AC073342.12->chr7:142952357-142984473:-,KEL->ArcherDX_panel,FoundationOne_panel,Kell_blood_group,_metallo-endopeptidase,chr7:142638201-142659768:-	DU4475_BREAST	1	1	0.1871	TRUE	2	0	0	3	0	FALSE	ACH-000258
DU4475_BREAST	FAM188A--DCLRE1C	11	8	FAM188A	15591	chr10:15828560:-	DCLRE1C	28196	chr10:14981868:-	ONLY_REF_SPLICE	YES	26	20	0.42	0.49	0.1286	0.0935	FAM188A->chr10:15820169-15902519:-,family_with_sequence_similarity_188_member_A,DCLRE1C->DNA_cross-link_repair_1C,chr10:14939358-14996431:-	DU4475_BREAST	0.42	0.49	0.2221	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	MT-ND5--MT-ND4	5	30	MT-ND5	2730	chrM:14066:+	MT-ND4	6214	chrM:11161:+	INCL_NON_REF_SPLICE	YES	4	20843	0.9	0	0.0584	0.3507	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	DU4475_BREAST	0	0.9	0.4091	FALSE	47	27	1	24	0	FALSE	ACH-000258
DU4475_BREAST	MT-ND5--MT-ND4	5	28	MT-ND5	2455	chrM:13791:+	MT-ND4	5931	chrM:10878:+	INCL_NON_REF_SPLICE	YES	4273	1671	0.01	0.02	0.0584	0.3273	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	DU4475_BREAST	0.01	0.02	0.3857	FALSE	29	26	1	23	0	FALSE	ACH-000258
DU4475_BREAST	AFAP1L2--ABLIM1	10	6	AFAP1L2	5670	chr10:116092980:-	ABLIM1	47578	chr10:116211430:-	ONLY_REF_SPLICE	YES	194	173	0.08	0.08	0.1169	0.0701	LOCAL_REARRANGEMENT:-:[26357],AFAP1L2->actin_filament_associated_protein_1_like_2,chr10:116054583-116164515:-,ABLIM1->actin_binding_LIM_protein_1,chr10:116190872-116444762:-	DU4475_BREAST	0.08	0.08	0.187	TRUE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	PHACTR2--ZC2HC1B	8	14	PHACTR2	4919	chr6:144033320:+	ZC2HC1B	37541	chr6:144258786:+	ONLY_REF_SPLICE	YES	7	0	0.76	1	0.0935	0.1636	{Klijn_CCL:Breast=1},NEIGHBORS[33251],PHACTR2->chr6:143857982-144152322:+,phosphatase_and_actin_regulator_2,ZC2HC1B->chr6:144185573-144259483:+,zinc_finger_C2HC-type_containing_1B	DU4475_BREAST	0.76	1	0.2571	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	OSBPL5--ZNF195	11	1	OSBPL5	2524	chr11:3186446:-	ZNF195	34791	chr11:3392933:-	ONLY_REF_SPLICE	YES	92	93	0.12	0.11	0.1286	0.0117	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,ZNF195->chr11:3360491-3400448:-,zinc_finger_protein_195	DU4475_BREAST	0.11	0.12	0.1403	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	MT-ND6--MT-TE	10	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1169	0.0468	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DU4475_BREAST	1	1	0.1637	FALSE	499	1288	110	792	0	FALSE	ACH-000258
DU4475_BREAST	NKD1--ADCY7	9	8	NKD1	2226	chr16:50583466:+	ADCY7	21506	chr16:50321823:+	ONLY_REF_SPLICE	YES	1526	0	0.01	1	0.1052	0.0935	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	DU4475_BREAST	0.01	1	0.1987	TRUE	0	1	0	4	1	FALSE	ACH-000258
DU4475_BREAST	MT-ND6--MT-TE	9	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.1052	0.0818	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DU4475_BREAST	0.89	1	0.187	FALSE	499	1288	110	792	0	FALSE	ACH-000258
DU4475_BREAST	RP11-353N4.6--RP11-403I13.8	4	27	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.8	17244	chr1:149291204:+	ONLY_REF_SPLICE	YES	206	4	0.13	0.89	0.0468	0.3156	GTEx_FI:{Esophagus=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5]},RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.8->chr1:149287451-149291743:+	DU4475_BREAST	0.13	0.89	0.3624	TRUE	6	2	0	8	0	FALSE	ACH-000258
DU4475_BREAST	MT-ND5--MT-ND4	8	9	MT-ND5	2794	chrM:14130:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	0	14038	1	0	0.0935	0.1052	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	DU4475_BREAST	0	1	0.1987	FALSE	47	27	1	24	0	FALSE	ACH-000258
DU4475_BREAST	MT-ND6--MT-TE	9	5	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1052	0.0584	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DU4475_BREAST	1	1	0.1636	FALSE	499	1288	110	792	0	FALSE	ACH-000258
DU4475_BREAST	MT-ND5--MT-ND4	3	27	MT-ND5	2697	chrM:14033:+	MT-ND4	6140	chrM:11087:+	INCL_NON_REF_SPLICE	YES	549	18773	0.05	0	0.0351	0.3156	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	DU4475_BREAST	0	0.05	0.3507	FALSE	47	27	1	24	0	FALSE	ACH-000258
DU4475_BREAST	MTSS1--FER1L6-AS1	9	1	MTSS1	4065	chr8:125711767:-	FER1L6-AS1	33985	chr8:125016472:-	ONLY_REF_SPLICE	YES	58	0	0.15	1	0.1052	0.0117	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,FER1L6-AS1->FER1L6_antisense_RNA_1,chr8:124996378-125053023:-	DU4475_BREAST	0.15	1	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	MT-ND5--MT-ND4	3	20	MT-ND5	2247	chrM:13583:+	MT-ND4	6120	chrM:11067:+	INCL_NON_REF_SPLICE	NO	6827	17394	0	0	0.0351	0.2338	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	DU4475_BREAST	0	0	0.2689	FALSE	47	29	1	24	0	FALSE	ACH-000258
DU4475_BREAST	RP11-120D5.1--MID1	6	8	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	20	0.88	0.41	0.0701	0.0935	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	DU4475_BREAST	0.41	0.88	0.1636	FALSE	16	356	14	466	0	FALSE	ACH-000258
DU4475_BREAST	MT-ND6--MT-TE	5	11	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0584	0.1286	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DU4475_BREAST	0.89	1	0.187	FALSE	499	1288	110	792	0	FALSE	ACH-000258
DU4475_BREAST	RP11-114H23.1--RP11-114H23.2	7	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0818	0.0234	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	DU4475_BREAST	0.9	1	0.1052	FALSE	81	155	12	160	0	FALSE	ACH-000258
DU4475_BREAST	AC019118.3--AC019118.2	2	21	AC019118.3	1234	chr2:3149318:-	AC019118.2	10354	chr2:2901076:-	ONLY_REF_SPLICE	YES	39	23	0.37	0.5	0.0234	0.2455	NEIGHBORS[5555],AC019118.3->chr2:3135353-3149551:-,AC019118.2->chr2:2898820-3129798:-	DU4475_BREAST	0.37	0.5	0.2689	FALSE	0	0	0	3	0	FALSE	ACH-000258
DU4475_BREAST	AC019118.3--TSSC1	6	4	AC019118.3	1234	chr2:3149318:-	TSSC1	19669	chr2:3218019:-	ONLY_REF_SPLICE	YES	39	225	0.2	0.04	0.0701	0.0468	LOCAL_REARRANGEMENT:-:[43145],AC019118.3->chr2:3135353-3149551:-,TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1	DU4475_BREAST	0.04	0.2	0.1169	TRUE	0	0	0	2	0	TRUE	ACH-000258
DU4475_BREAST	GDAP1--RP11-758M4.1	6	4	GDAP1	6888	chr8:75275288:+	RP11-758M4.1	16041	chr8:75525088:+	ONLY_REF_SPLICE	YES	51	0	0.16	1	0.0701	0.0468	GTEx_FI:{Esophagus=[count:3=pct:0.7],Muscle=[count:2=pct:0.9],Brain=[count:2=pct:0.3],Pituitary=[count:1=pct:1.9]},GDAP1->chr8:75233365-75401107:+,ganglioside_induced_differentiation_associated_protein_1,RP11-758M4.1->chr8:75512010-75735548:+	DU4475_BREAST	0.16	1	0.1169	TRUE	7	28	0	43	0	FALSE	ACH-000258
DU4475_BREAST	MT-ND6--MT-TE	6	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0.0468	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DU4475_BREAST	1	1	0.1169	FALSE	499	1288	110	792	0	FALSE	ACH-000258
DU4475_BREAST	CYB5B--VPS4A	6	3	CYB5B	1333	chr16:69458760:+	VPS4A	21192	chr16:69356463:+	ONLY_REF_SPLICE	YES	889	339	0.01	0.03	0.0701	0.0351	LOCAL_REARRANGEMENT:+:[99479],CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B,VPS4A->chr16:69345259-69358949:+,vacuolar_protein_sorting_4_homolog_A	DU4475_BREAST	0.01	0.03	0.1052	TRUE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	NKD1--ADCY7	4	10	NKD1	3293	chr16:50642271:+	ADCY7	21506	chr16:50321823:+	ONLY_REF_SPLICE	YES	1423	0	0.01	1	0.0468	0.1169	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	DU4475_BREAST	0.01	1	0.1637	TRUE	0	0	0	2	0	FALSE	ACH-000258
DU4475_BREAST	NKD1--PAPD5	3	14	NKD1	2226	chr16:50583466:+	PAPD5	23740	chr16:50256217:+	ONLY_REF_SPLICE	YES	1526	16	0.01	0.52	0.0351	0.1636	NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,PAPD5->PAP_associated_domain_containing_5,chr16:50186829-50269221:+	DU4475_BREAST	0.01	0.52	0.1987	TRUE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	VDAC1--SKP1	6	2	VDAC1	8911	chr5:133311556:-	SKP1	31682	chr5:133486159:-	INCL_NON_REF_SPLICE	YES	4319	30	0	0.21	0.0701	0.0234	VDAC1->chr5:133307606-133340824:-,voltage_dependent_anion_channel_1,SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-	DU4475_BREAST	0	0.21	0.0935	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	MT-TA--MT-TC	6	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0.0117	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DU4475_BREAST	1	1	0.0818	FALSE	462	80	0	856	0	FALSE	ACH-000258
DU4475_BREAST	PDCD10--SERPINI1	6	1	PDCD10	1134	chr3:167452594:-	SERPINI1	18191	chr3:167506899:+	ONLY_REF_SPLICE	YES	27	1378	0.21	0.01	0.0701	0.0117	LOCAL_INVERSION:-:+:[304],PDCD10->chr3:167401086-167452727:-,programmed_cell_death_10,SERPINI1->chr3:167453031-167543356:+,serpin_family_I_member_1	DU4475_BREAST	0.01	0.21	0.0818	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	PHACTR2--ZC2HC1B	1	21	PHACTR2	6210	chr6:144070202:+	ZC2HC1B	38034	chr6:144259279:+	ONLY_REF_SPLICE	YES	12	0	0.65	1	0.0117	0.2455	{Klijn_CCL:Breast=1},NEIGHBORS[33251],PHACTR2->chr6:143857982-144152322:+,phosphatase_and_actin_regulator_2,ZC2HC1B->chr6:144185573-144259483:+,zinc_finger_C2HC-type_containing_1B	DU4475_BREAST	0.65	1	0.2572	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	RP11-680G10.1--GSE1	5	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	38	1	0.21	0.0584	0.0584	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	DU4475_BREAST	0.21	1	0.1168	TRUE	458	1351	185	561	0	FALSE	ACH-000258
DU4475_BREAST	ADAM19--SOX30	5	4	ADAM19	11399	chr5:156936309:-	SOX30	35759	chr5:157094860:-	ONLY_REF_SPLICE	YES	503	1	0.02	0.9	0.0584	0.0468	LOCAL_REARRANGEMENT:-:[49904],ADAM19->ADAM_metallopeptidase_domain_19,chr5:156822542-157002783:-,SOX30->SRY-box_30,chr5:157052687-157098488:-	DU4475_BREAST	0.02	0.9	0.1052	TRUE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	DKK4--RPLP0	6	0	DKK4	2402	chr8:42233245:-	RPLP0	9297	chr12:120636803:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0	DKK4->chr8:42231586-42234750:-,dickkopf_WNT_signaling_pathway_inhibitor_4,RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0	DU4475_BREAST	1	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	MT-ND3--MT-ATP8	6	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DU4475_BREAST	1	1	0.0701	FALSE	351	233	23	137	0	FALSE	ACH-000258
DU4475_BREAST	MTX2--AC016739.1	4	8	MTX2	4061	chr2:177162623:+	AC016739.1	15528	chr2:177107286:+	INCL_NON_REF_SPLICE	YES	337	4	0.03	0.75	0.0468	0.0935	LOCAL_REARRANGEMENT:+:[26402],MTX2->chr2:177134123-177202753:+,metaxin_2,AC016739.1->chr2:177106839-177107721:+	DU4475_BREAST	0.03	0.75	0.1403	TRUE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	NKD1--PAPD5	2	16	NKD1	2226	chr16:50583466:+	PAPD5	20464	chr16:50248132:+	ONLY_REF_SPLICE	YES	1526	15	0.01	0.55	0.0234	0.187	NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,PAPD5->PAP_associated_domain_containing_5,chr16:50186829-50269221:+	DU4475_BREAST	0.01	0.55	0.2104	TRUE	0	1	0	1	1	FALSE	ACH-000258
DU4475_BREAST	AC019118.3--TSSC1	4	7	AC019118.3	1234	chr2:3149318:-	TSSC1	18308	chr2:3261226:-	ONLY_REF_SPLICE	YES	39	208	0.22	0.05	0.0468	0.0818	LOCAL_REARRANGEMENT:-:[43145],AC019118.3->chr2:3135353-3149551:-,TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1	DU4475_BREAST	0.05	0.22	0.1286	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	MT-ND5--MT-ND4	4	6	MT-ND5	2730	chrM:14066:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	4	14038	0.71	0	0.0468	0.0701	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	DU4475_BREAST	0	0.71	0.1169	FALSE	47	27	1	24	0	FALSE	ACH-000258
DU4475_BREAST	MT-ND6--MT-TE	3	9	MT-ND6	1049	chrM:14625:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0.1052	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DU4475_BREAST	1	1	0.1403	FALSE	499	1288	110	792	0	FALSE	ACH-000258
DU4475_BREAST	RP11-173B14.5--TBC1D4	5	1	RP11-173B14.5	1166	chr13:76209965:-	TBC1D4	9439	chr13:75936743:-	ONLY_REF_SPLICE	YES	1	20	0.86	0.23	0.0584	0.0117	RP11-173B14.5->chr13:76178836-76210130:-,TBC1D4->TBC1_domain_family_member_4,chr13:75858808-76056250:-	DU4475_BREAST	0.23	0.86	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	H3F3A--RP4-613A2.1	5	0	H3F3A	3464	chr1:226252180:+	RP4-613A2.1	13026	chr1:229649725:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0584	0	H3F3A->ArcherDX_panel,FoundationOne_panel,H3_histone,_family_3A,Oncogene{Bushman},chr1:226249552-226259702:+,RP4-613A2.1->chr1:229644248-229650019:+	DU4475_BREAST	1	1	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	MT-ND5--MT-ND4	3	8	MT-ND5	1372	chrM:12708:+	MT-ND4	6107	chrM:11054:+	INCL_NON_REF_SPLICE	YES	618	15566	0.02	0	0.0351	0.0935	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	DU4475_BREAST	0	0.02	0.1286	FALSE	18	23	1	20	0	FALSE	ACH-000258
DU4475_BREAST	NKD1--PAPD5	1	16	NKD1	3293	chr16:50642271:+	PAPD5	19340	chr16:50245234:+	ONLY_REF_SPLICE	YES	1423	7	0.01	0.71	0.0117	0.187	NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,PAPD5->PAP_associated_domain_containing_5,chr16:50186829-50269221:+	DU4475_BREAST	0.01	0.71	0.1987	TRUE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	NKD1--PAPD5	1	16	NKD1	2226	chr16:50583466:+	PAPD5	19340	chr16:50245234:+	ONLY_REF_SPLICE	YES	1526	7	0.01	0.71	0.0117	0.187	NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,PAPD5->PAP_associated_domain_containing_5,chr16:50186829-50269221:+	DU4475_BREAST	0.01	0.71	0.1987	TRUE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	NKD1--ADCY7	2	11	NKD1	6816	chr16:50659491:+	ADCY7	21506	chr16:50321823:+	ONLY_REF_SPLICE	YES	1637	0	0.01	1	0.0234	0.1286	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	DU4475_BREAST	0.01	1	0.152	TRUE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	RP11-123O10.4--GRIP1	4	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	34	1	0.17	0.0468	0.0351	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	DU4475_BREAST	0.17	1	0.0819	FALSE	416	2512	207	587	0	FALSE	ACH-000258
DU4475_BREAST	MT-TA--MT-TC	4	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0.0234	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DU4475_BREAST	1	1	0.0702	FALSE	462	80	0	856	0	FALSE	ACH-000258
DU4475_BREAST	MT-ND6--MT-TE	3	5	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0.0584	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DU4475_BREAST	1	1	0.0935	FALSE	499	1288	110	792	0	FALSE	ACH-000258
DU4475_BREAST	AP000230.1--AP001596.6	4	0	AP000230.1	4332	chr21:27588148:+	AP001596.6	18001	chr21:27843070:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0	GTEx_FI:{Brain=[count:3=pct:0.5]},AP000230.1->chr21:27543189-27589700:+,AP001596.6->chr21:27750871-27844017:+	DU4475_BREAST	1	1	0.0468	TRUE	2	11	0	3	0	FALSE	ACH-000258
DU4475_BREAST	DKK4--RPLP0	4	0	DKK4	2420	chr8:42233227:-	RPLP0	9313	chr12:120636787:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0	DKK4->chr8:42231586-42234750:-,dickkopf_WNT_signaling_pathway_inhibitor_4,RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0	DU4475_BREAST	1	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	HPCAL1--MT-CO3	4	0	HPCAL1	5340	chr2:10537030:+	MT-CO3	17735	chrM:9278:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0	HPCAL1->chr2:10443015-10567743:+,hippocalcin_like_1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	DU4475_BREAST	1	1	0.0468	FALSE	0	0	0	5	0	FALSE	ACH-000258
DU4475_BREAST	MT-ND3--MT-ATP8	4	0	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0468	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DU4475_BREAST	1	1	0.0468	FALSE	351	233	23	137	0	FALSE	ACH-000258
DU4475_BREAST	RP11-108K3.1--GLDN	3	4	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	2	1	0.78	0.0351	0.0468	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	DU4475_BREAST	0.78	1	0.0819	FALSE	1	20	0	46	0	FALSE	ACH-000258
DU4475_BREAST	VDAC1--PPP2CA	4	0	VDAC1	1487	chr5:133340338:-	PPP2CA	17679	chr5:133541822:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0468	0	VDAC1->chr5:133307606-133340824:-,voltage_dependent_anion_channel_1,PPP2CA->chr5:133530025-133561833:-,protein_phosphatase_2_catalytic_subunit_alpha	DU4475_BREAST	1	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	AC019118.3--AC019118.2	1	11	AC019118.3	1234	chr2:3149318:-	AC019118.2	10978	chr2:2900452:-	ONLY_REF_SPLICE	NO	39	28	0.24	0.3	0.0117	0.1286	NEIGHBORS[5555],AC019118.3->chr2:3135353-3149551:-,AC019118.2->chr2:2898820-3129798:-	DU4475_BREAST	0.24	0.3	0.1403	FALSE	0	0	0	3	0	FALSE	ACH-000258
DU4475_BREAST	NKD1--ADCY7	3	3	NKD1	2226	chr16:50583466:+	ADCY7	30123	chr16:50334630:+	INCL_NON_REF_SPLICE	YES	1526	25	0	0.19	0.0351	0.0351	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	DU4475_BREAST	0	0.19	0.0702	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	NKD1--ADCY7	1	11	NKD1	5460	chr16:50655619:+	ADCY7	21506	chr16:50321823:+	ONLY_REF_SPLICE	YES	1488	0	0.01	1	0.0117	0.1286	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	DU4475_BREAST	0.01	1	0.1403	TRUE	0	0	0	2	0	FALSE	ACH-000258
DU4475_BREAST	RP11-108K3.1--GLDN	2	7	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	1	2	0.9	0.82	0.0234	0.0818	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	DU4475_BREAST	0.82	0.9	0.1052	FALSE	0	14	0	30	0	FALSE	ACH-000258
DU4475_BREAST	RP11-120D5.1--MID1	2	7	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	20	0.64	0.31	0.0234	0.0818	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	DU4475_BREAST	0.31	0.64	0.1052	FALSE	0	48	1	163	0	FALSE	ACH-000258
DU4475_BREAST	XKR9--RP11-326E22.1	3	3	XKR9	8344	chr8:71619388:+	RP11-326E22.1	21087	chr8:72111375:+	ONLY_REF_SPLICE	YES	37	0	0.14	1	0.0351	0.0351	GTEx_FI:{Brain=[count:4=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Liver=[count:1=pct:0.8]},XKR9->XK_related_9,chr8:71581600-71702606:+,RP11-326E22.1->chr8:72067692-72116458:+	DU4475_BREAST	0.14	1	0.0702	TRUE	5	29	0	13	0	FALSE	ACH-000258
DU4475_BREAST	KIAA0247--SLC39A9	3	2	KIAA0247	3670	chr14:70125430:+	SLC39A9	21329	chr14:69908786:+	ONLY_REF_SPLICE	YES	378	140	0.01	0.03	0.0351	0.0234	KIAA0247->chr14:70078313-70181859:+,SLC39A9->chr14:69864732-69929105:+,solute_carrier_family_39_member_9	DU4475_BREAST	0.01	0.03	0.0585	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	POU2F1--DUSP27	3	2	POU2F1	1130	chr1:167190195:+	DUSP27	44892	chr1:167082947:+	ONLY_REF_SPLICE	YES	2	4	0.71	0.56	0.0351	0.0234	LOCAL_REARRANGEMENT:+:[91664],POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,DUSP27->chr1:167063282-167098402:+,dual_specificity_phosphatase_27_(putative)	DU4475_BREAST	0.56	0.71	0.0585	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	SUPT4H1--SEPT4	3	2	SUPT4H1	2692	chr17:56428763:-	SEPT4	20076	chr17:56599462:-	ONLY_REF_SPLICE	YES	1164	2	0	0.71	0.0351	0.0234	SUPT4H1->SPT4_homolog,_DSIF_elongation_factor_subunit,chr17:56422539-56430454:-,SEPT4->chr17:56597611-56618179:-,septin_4	DU4475_BREAST	0	0.71	0.0585	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	ARFGEF1--RP11-27N21.3	3	1	ARFGEF1	1514	chr8:68255399:-	RP11-27N21.3	48007	chr8:80689574:+	ONLY_REF_SPLICE	YES	19	0	0.17	1	0.0351	0.0117	ARFGEF1->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_1,chr8:68085747-68255912:-,RP11-27N21.3->chr8:80680377-80715077:+	DU4475_BREAST	0.17	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	CCDC122--ENOX1	3	1	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	66	0	0.06	1	0.0351	0.0117	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	DU4475_BREAST	0.06	1	0.0468	FALSE	39	52	2	34	0	FALSE	ACH-000258
DU4475_BREAST	DKK4--LMO4	3	1	DKK4	2408	chr8:42233239:-	LMO4	9299	chr1:87797370:+	INCL_NON_REF_SPLICE	YES	20406	1856	0	0	0.0351	0.0117	DKK4->chr8:42231586-42234750:-,dickkopf_WNT_signaling_pathway_inhibitor_4,LMO4->LIM_domain_only_4,chr1:87794151-87814606:+	DU4475_BREAST	0	0	0.0468	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	CTB-35F21.1--UBE2D2	3	0	CTB-35F21.1	1788	chr5:139065017:+	UBE2D2	12600	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	LOCAL_REARRANGEMENT:+:[56212],CTB-35F21.1->chr5:139064230-139124595:+,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	DU4475_BREAST	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	MT-ND3--MT-ATP8	3	0	MT-ND3	1011	chrM:10069:+	MT-ATP8	4379	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	DU4475_BREAST	1	1	0.0351	FALSE	351	233	23	137	0	FALSE	ACH-000258
DU4475_BREAST	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DU4475_BREAST	1	1	0.0351	FALSE	499	1288	110	792	0	FALSE	ACH-000258
DU4475_BREAST	NKD1--ADCY7	2	4	NKD1	2226	chr16:50583466:+	ADCY7	26052	chr16:50326587:+	ONLY_REF_SPLICE	YES	1526	18	0	0.25	0.0234	0.0468	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	DU4475_BREAST	0	0.25	0.0702	FALSE	0	1	0	3	1	FALSE	ACH-000258
DU4475_BREAST	FAM188A--DCLRE1C	2	3	FAM188A	14084	chr10:15831246:-	DCLRE1C	28196	chr10:14981868:-	ONLY_REF_SPLICE	YES	27	20	0.16	0.2	0.0234	0.0351	FAM188A->chr10:15820169-15902519:-,family_with_sequence_similarity_188_member_A,DCLRE1C->DNA_cross-link_repair_1C,chr10:14939358-14996431:-	DU4475_BREAST	0.16	0.2	0.0585	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	PHACTR2--ZC2HC1B	1	7	PHACTR2	4919	chr6:144033320:+	ZC2HC1B	38034	chr6:144259279:+	ONLY_REF_SPLICE	NO	7	0	0.53	1	0.0117	0.0818	{Klijn_CCL:Breast=1},NEIGHBORS[33251],PHACTR2->chr6:143857982-144152322:+,phosphatase_and_actin_regulator_2,ZC2HC1B->chr6:144185573-144259483:+,zinc_finger_C2HC-type_containing_1B	DU4475_BREAST	0.53	1	0.0935	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	POU2F1--DUSP27	2	3	POU2F1	1130	chr1:167190195:+	DUSP27	43766	chr1:167064071:+	ONLY_REF_SPLICE	YES	2	1	0.71	0.83	0.0234	0.0351	LOCAL_REARRANGEMENT:+:[91664],POU2F1->POU_class_2_homeobox_1,chr1:167190066-167396582:+,DUSP27->chr1:167063282-167098402:+,dual_specificity_phosphatase_27_(putative)	DU4475_BREAST	0.71	0.83	0.0585	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	ADAM19--SOX30	2	2	ADAM19	22930	chr5:156916110:-	SOX30	43036	chr5:157053729:-	ONLY_REF_SPLICE	YES	574	88	0.01	0.04	0.0234	0.0234	LOCAL_REARRANGEMENT:-:[49904],ADAM19->ADAM_metallopeptidase_domain_19,chr5:156822542-157002783:-,SOX30->SRY-box_30,chr5:157052687-157098488:-	DU4475_BREAST	0.01	0.04	0.0468	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	ADAM19--SOX30	2	1	ADAM19	1173	chr5:157002611:-	SOX30	35759	chr5:157094860:-	ONLY_REF_SPLICE	YES	212	1	0.01	0.75	0.0234	0.0117	LOCAL_REARRANGEMENT:-:[49904],ADAM19->ADAM_metallopeptidase_domain_19,chr5:156822542-157002783:-,SOX30->SRY-box_30,chr5:157052687-157098488:-	DU4475_BREAST	0.01	0.75	0.0351	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	AP001432.14--TTC3	2	1	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	4	129	0.43	0.02	0.0234	0.0117	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	DU4475_BREAST	0.02	0.43	0.0351	TRUE	0	0	0	15	0	FALSE	ACH-000258
DU4475_BREAST	KIF26B--C1orf101	2	1	KIF26B	17029	chr1:245809582:+	C1orf101	54371	chr1:244754983:+	ONLY_REF_SPLICE	YES	126	2	0.02	0.6	0.0234	0.0117	KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,C1orf101->chr1:244617679-244804479:+,chromosome_1_open_reading_frame_101	DU4475_BREAST	0.02	0.6	0.0351	TRUE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	KIF26B--SMYD3	2	1	KIF26B	2699	chr1:245319985:+	SMYD3	63393	chr1:245927451:-	ONLY_REF_SPLICE	YES	31	1308	0.09	0	0.0234	0.0117	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	DU4475_BREAST	0	0.09	0.0351	FALSE	0	5	0	2	2	FALSE	ACH-000258
DU4475_BREAST	NDUFA4--PHF14	2	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	1734	127	0	0.02	0.0234	0.0117	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	DU4475_BREAST	0	0.02	0.0351	FALSE	19	32	3	60	0	FALSE	ACH-000258
DU4475_BREAST	NKD1--ADCY7	1	5	NKD1	5460	chr16:50655619:+	ADCY7	25112	chr16:50325647:+	ONLY_REF_SPLICE	NO	1488	16	0	0.27	0.0117	0.0584	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	DU4475_BREAST	0	0.27	0.0701	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	NRP2--PARD3B	2	1	NRP2	23807	chr2:206631527:+	PARD3B	65812	chr2:206364620:+	ONLY_REF_SPLICE	YES	230	12	0.01	0.2	0.0234	0.0117	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:+:[61828],NRP2->chr2:206546714-206662857:+,neuropilin_2,PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta	DU4475_BREAST	0.01	0.2	0.0351	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	RP11-1379J22.5--DHTKD1	2	1	RP11-1379J22.5	1720	chr5:179085482:+	DHTKD1	8176	chr10:12123471:+	ONLY_REF_SPLICE	YES	9	213	0.25	0.01	0.0234	0.0117	RP11-1379J22.5->chr5:179084763-179091433:+,DHTKD1->chr10:12110971-12165224:+,dehydrogenase_E1_and_transketolase_domain_containing_1	DU4475_BREAST	0.01	0.25	0.0351	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	AC005592.2--SPRY4	2	0	AC005592.2	3506	chr5:141733148:+	SPRY4	20439	chr5:141694720:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	NEIGHBORS_OVERLAP:+:-:[1162],AC005592.2->chr5:141704858-142051566:+,SPRY4->chr5:141689992-141706020:-,sprouty_RTK_signaling_antagonist_4	DU4475_BREAST	1	1	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	ADAM19--SOX30	1	4	ADAM19	10222	chr5:156940442:-	SOX30	35759	chr5:157094860:-	ONLY_REF_SPLICE	YES	408	1	0.01	0.83	0.0117	0.0468	LOCAL_REARRANGEMENT:-:[49904],ADAM19->ADAM_metallopeptidase_domain_19,chr5:156822542-157002783:-,SOX30->SRY-box_30,chr5:157052687-157098488:-	DU4475_BREAST	0.01	0.83	0.0585	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	GPR137B--EDARADD	2	0	GPR137B	6222	chr1:236347206:+	EDARADD	18504	chr1:236572516:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_FI:{Nerve=[count:12=pct:7.1],Brain=[count:4=pct:0.6],Adipose_Tissue=[count:1=pct:0.3]},GPR137B->G_protein-coupled_receptor_137B,chr1:236305832-236385165:+,EDARADD->EDAR-associated_death_domain,chr1:236511562-236648214:+	DU4475_BREAST	1	1	0.0234	TRUE	17	20	0	2	0	FALSE	ACH-000258
DU4475_BREAST	GRAPL--NAA38	2	0	GRAPL	4039	chr17:19041901:+	NAA38	16745	chr7:117831966:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GRAPL->GRB2-related_adaptor_protein-like,chr17:19030782-19062489:+,NAA38->N(alpha)-acetyltransferase_38,_NatC_auxiliary_subunit,chr7:117824086-117832878:+	DU4475_BREAST	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	HHAT--SERTAD4	2	0	HHAT	3366	chr1:210522410:+	SERTAD4	23888	chr1:210411289:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	LOCAL_REARRANGEMENT:+:[81620],HHAT->chr1:210501596-210849638:+,hedgehog_acyltransferase,SERTAD4->SERTA_domain_containing_4,chr1:210406144-210419976:+	DU4475_BREAST	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	NKD1--ADCY7	1	4	NKD1	2226	chr16:50583466:+	ADCY7	23908	chr16:50324368:+	ONLY_REF_SPLICE	YES	1526	19	0	0.21	0.0117	0.0468	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	DU4475_BREAST	0	0.21	0.0585	FALSE	0	0	0	3	0	FALSE	ACH-000258
DU4475_BREAST	NKD1--PAPD5	2	0	NKD1	2226	chr16:50583466:+	PAPD5	34403	chr16:50268837:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,PAPD5->PAP_associated_domain_containing_5,chr16:50186829-50269221:+	DU4475_BREAST	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	NRP2--PARD3B	2	0	NRP2	2374	chr2:206548087:+	PARD3B	68028	chr2:206480180:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:+:[61828],NRP2->chr2:206546714-206662857:+,neuropilin_2,PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta	DU4475_BREAST	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	PROX1-AS1--PROX1	2	0	PROX1-AS1	1051	chr1:214160923:-	PROX1	35743	chr1:214169812:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	NEIGHBORS_OVERLAP:-:+:[4449],PROX1-AS1->PROX1_antisense_RNA_1,chr1:213991094-214160973:-,PROX1->chr1:214156524-214214595:+,prospero_homeobox_1	DU4475_BREAST	1	1	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	STX18-AS1--MSX1	2	0	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	DU4475_BREAST	1	1	0.0234	TRUE	37	101	7	40	0	FALSE	ACH-000258
DU4475_BREAST	TFRC--PCYT1A	2	0	TFRC	1147	chr3:195808914:-	PCYT1A	33845	chr3:195975194:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor,PCYT1A->chr3:195941093-196014828:-,phosphate_cytidylyltransferase_1,_choline,_alpha	DU4475_BREAST	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DU4475_BREAST	1	1	0.0234	TRUE	62	24	1	171	0	FALSE	ACH-000258
DU4475_BREAST	VDAC1--SKP1	1	4	VDAC1	8905	chr5:133311562:-	SKP1	23555	chr5:133494286:-	ONLY_REF_SPLICE	YES	4113	4295	0	0	0.0117	0.0468	VDAC1->chr5:133307606-133340824:-,voltage_dependent_anion_channel_1,SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-	DU4475_BREAST	0	0	0.0585	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	VDAC1--SKP1	2	0	VDAC1	1487	chr5:133340338:-	SKP1	17813	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	VDAC1->chr5:133307606-133340824:-,voltage_dependent_anion_channel_1,SKP1->Oncogene{Bushman},S-phase_kinase-associated_protein_1,chr5:133484633-133512729:-	DU4475_BREAST	1	1	0.0234	TRUE	0	1	0	1	1	TRUE	ACH-000258
DU4475_BREAST	XRN2--SAE1	2	0	XRN2	1170	chr20:21284111:+	SAE1	40897	chr19:47700490:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+,SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+	DU4475_BREAST	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000258
DU4475_BREAST	ADAM19--SOX30	1	3	ADAM19	5864	chr5:156964921:-	SOX30	41543	chr5:157065730:-	ONLY_REF_SPLICE	YES	350	63	0.01	0.06	0.0117	0.0351	LOCAL_REARRANGEMENT:-:[49904],ADAM19->ADAM_metallopeptidase_domain_19,chr5:156822542-157002783:-,SOX30->SRY-box_30,chr5:157052687-157098488:-	DU4475_BREAST	0.01	0.06	0.0468	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	NKD1--ADCY7	1	3	NKD1	2226	chr16:50583466:+	ADCY7	28991	chr16:50332815:+	ONLY_REF_SPLICE	NO	1526	18	0	0.18	0.0117	0.0351	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	DU4475_BREAST	0	0.18	0.0468	FALSE	0	0	0	2	0	FALSE	ACH-000258
DU4475_BREAST	ACTN4--RYR1	1	2	ACTN4	1259	chr19:39138547:+	RYR1	60755	chr19:38986855:+	ONLY_REF_SPLICE	YES	4662	0	0	1	0.0117	0.0234	LOCAL_REARRANGEMENT:+:[60085],ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,RYR1->chr19:38924339-39078204:+,ryanodine_receptor_1	DU4475_BREAST	0	1	0.0351	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	NKD1--ADCY7	1	2	NKD1	2226	chr16:50583466:+	ADCY7	32369	chr16:50338271:+	ONLY_REF_SPLICE	YES	1526	18	0	0.14	0.0117	0.0234	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	DU4475_BREAST	0	0.14	0.0351	FALSE	0	0	0	2	0	FALSE	ACH-000258
DU4475_BREAST	NKD1--ADCY7	1	2	NKD1	3293	chr16:50642271:+	ADCY7	32369	chr16:50338271:+	ONLY_REF_SPLICE	YES	1423	18	0	0.14	0.0117	0.0234	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	DU4475_BREAST	0	0.14	0.0351	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	RP13-977J11.8--NOC4L	1	2	RP13-977J11.8	1121	chr12:132674878:+	NOC4L	10383	chr12:132635526:+	ONLY_REF_SPLICE	YES	4	49	0.43	0.06	0.0117	0.0234	LOCAL_REARRANGEMENT:+:[37745],RP13-977J11.8->chr12:132674758-132675542:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	DU4475_BREAST	0.06	0.43	0.0351	TRUE	0	3	0	2	2	TRUE	ACH-000258
DU4475_BREAST	TIMM23--RP11-464F9.1	1	2	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	596	9	0.01	0.25	0.0117	0.0234	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DU4475_BREAST	0.01	0.25	0.0351	FALSE	5	8	0	33	0	FALSE	ACH-000258
DU4475_BREAST	WIPF1--CHN1	1	2	WIPF1	1143	chr2:175547502:-	CHN1	41509	chr2:175689246:-	ONLY_REF_SPLICE	YES	16	210	0.16	0.01	0.0117	0.0234	WIPF1->WAS/WASL_interacting_protein_family_member_1,chr2:175424300-175547644:-,CHN1->Oncogene{Bushman},chimerin_1,chr2:175664091-175870097:-	DU4475_BREAST	0.01	0.16	0.0351	FALSE	0	0	0	2	0	FALSE	ACH-000258
DU4475_BREAST	XKR9--LACTB2	1	2	XKR9	1174	chr8:71581773:+	LACTB2	20001	chr8:71556478:-	ONLY_REF_SPLICE	YES	47	180	0.06	0.02	0.0117	0.0234	LOCAL_INVERSION:+:-:[191],XKR9->XK_related_9,chr8:71581600-71702606:+,LACTB2->chr8:71547553-71581409:-,lactamase_beta_2	DU4475_BREAST	0.02	0.06	0.0351	TRUE	0	11	0	8	7	TRUE	ACH-000258
DU4475_BREAST	AC019118.3--TSSC1	1	1	AC019118.3	1234	chr2:3149318:-	TSSC1	22923	chr2:3200788:-	ONLY_REF_SPLICE	YES	39	220	0.05	0.01	0.0117	0.0117	LOCAL_REARRANGEMENT:-:[43145],AC019118.3->chr2:3135353-3149551:-,TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1	DU4475_BREAST	0.01	0.05	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	ADAM19--SOX30	1	1	ADAM19	6941	chr5:156957815:-	SOX30	43036	chr5:157053729:-	ONLY_REF_SPLICE	YES	332	88	0.01	0.02	0.0117	0.0117	LOCAL_REARRANGEMENT:-:[49904],ADAM19->ADAM_metallopeptidase_domain_19,chr5:156822542-157002783:-,SOX30->SRY-box_30,chr5:157052687-157098488:-	DU4475_BREAST	0.01	0.02	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	ADAP1--PDGFA	1	1	ADAP1	9672	chr7:959605:-	PDGFA	27038	chr7:540879:-	ONLY_REF_SPLICE	YES	592	618	0	0	0.0117	0.0117	ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,PDGFA->OncocartaV1_panel,Oncogene{Bushman},chr7:536895-559933:-,platelet_derived_growth_factor_subunit_A	DU4475_BREAST	0	0	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	ADAP1--PDGFA	1	1	ADAP1	9672	chr7:959605:-	PDGFA	24745	chr7:552092:-	ONLY_REF_SPLICE	NO	592	539	0	0	0.0117	0.0117	ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,PDGFA->OncocartaV1_panel,Oncogene{Bushman},chr7:536895-559933:-,platelet_derived_growth_factor_subunit_A	DU4475_BREAST	0	0	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	CRELD1--CPNE9	1	1	CRELD1	2096	chr3:9976601:+	CPNE9	21725	chr3:9767633:+	ONLY_REF_SPLICE	YES	61	88	0.03	0.02	0.0117	0.0117	CRELD1->chr3:9975506-9987097:+,cysteine_rich_with_EGF_like_domains_1,CPNE9->chr3:9745491-9771592:+,copine_family_member_9	DU4475_BREAST	0.02	0.03	0.0234	TRUE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	GATS--PILRB	1	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	33	249	0.06	0.01	0.0117	0.0117	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	DU4475_BREAST	0.01	0.06	0.0234	FALSE	57	41	2	35	0	FALSE	ACH-000258
DU4475_BREAST	GGACT--PCCA	1	1	GGACT	3102	chr13:101236079:-	PCCA	40151	chr13:101179929:+	ONLY_REF_SPLICE	NO	31	774	0.06	0	0.0117	0.0117	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	DU4475_BREAST	0	0.06	0.0234	FALSE	7	15	0	10	0	FALSE	ACH-000258
DU4475_BREAST	KIF26B--C1orf101	1	1	KIF26B	17029	chr1:245809582:+	C1orf101	55422	chr1:244756697:+	ONLY_REF_SPLICE	YES	126	2	0.02	0.5	0.0117	0.0117	KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,C1orf101->chr1:244617679-244804479:+,chromosome_1_open_reading_frame_101	DU4475_BREAST	0.02	0.5	0.0234	TRUE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	KIF26B--SMYD3	1	1	KIF26B	5472	chr1:245530669:+	SMYD3	63393	chr1:245927451:-	ONLY_REF_SPLICE	YES	66	1308	0.03	0	0.0117	0.0117	LOCAL_INVERSION:+:-:[39909],KIF26B->chr1:245318287-245872733:+,kinesin_family_member_26B,SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	DU4475_BREAST	0	0.03	0.0234	FALSE	0	1	0	1	1	FALSE	ACH-000258
DU4475_BREAST	NKD1--ADCY7	1	1	NKD1	2226	chr16:50583466:+	ADCY7	39323	chr16:50345604:+	ONLY_REF_SPLICE	NO	1526	26	0	0.07	0.0117	0.0117	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	DU4475_BREAST	0	0.07	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	NKD1--ADCY7	1	1	NKD1	2226	chr16:50583466:+	ADCY7	36297	chr16:50342578:+	ONLY_REF_SPLICE	YES	1526	31	0	0.06	0.0117	0.0117	{Klijn_CCL:Breast=1},NKD1->chr16:50582241-50670647:+,naked_cuticle_homolog_1,ADCY7->adenylate_cyclase_7,chr16:50280048-50352046:+	DU4475_BREAST	0	0.06	0.0234	FALSE	0	0	0	2	0	FALSE	ACH-000258
DU4475_BREAST	NRP2--PARD3B	1	1	NRP2	23807	chr2:206631527:+	PARD3B	68028	chr2:206480180:+	ONLY_REF_SPLICE	YES	230	7	0.01	0.22	0.0117	0.0117	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:+:[61828],NRP2->chr2:206546714-206662857:+,neuropilin_2,PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta	DU4475_BREAST	0.01	0.22	0.0234	FALSE	0	1	0	1	1	FALSE	ACH-000258
DU4475_BREAST	NRP2--PARD3B	1	1	NRP2	19757	chr2:206617699:+	PARD3B	65812	chr2:206364620:+	ONLY_REF_SPLICE	YES	226	12	0.01	0.14	0.0117	0.0117	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:+:[61828],NRP2->chr2:206546714-206662857:+,neuropilin_2,PARD3B->chr2:205410516-206484886:+,par-3_family_cell_polarity_regulator_beta	DU4475_BREAST	0.01	0.14	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	PDP1--DNMT3A	1	1	PDP1	2613	chr8:94929307:+	DNMT3A	16077	chr2:25537030:-	ONLY_REF_SPLICE	YES	64	1	0.03	0.67	0.0117	0.0117	PDP1->chr8:94870035-94938294:+,pyruvate_dehyrogenase_phosphatase_catalytic_subunit_1,DNMT3A->ArcherDX_panel,DNA_(cytosine-5-)-methyltransferase_3_alpha,FoundationOne_panel,Oncogene{Bushman},chr2:25455845-25565459:-	DU4475_BREAST	0.03	0.67	0.0234	TRUE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	RPRD1A--SLC39A6	1	1	RPRD1A	1323	chr18:33647217:-	SLC39A6	30072	chr18:33694437:-	ONLY_REF_SPLICE	YES	293	142	0.01	0.01	0.0117	0.0117	LOCAL_REARRANGEMENT:-:[40956],RPRD1A->chr18:33564350-33647539:-,regulation_of_nuclear_pre-mRNA_domain_containing_1A,SLC39A6->Oncogene{Bushman},chr18:33688495-33709348:-,solute_carrier_family_39_member_6	DU4475_BREAST	0.01	0.01	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	SCCPDH--SMYD3	1	1	SCCPDH	2679	chr1:246890306:+	SMYD3	36270	chr1:246093239:-	ONLY_REF_SPLICE	YES	770	297	0	0.01	0.0117	0.0117	SCCPDH->chr1:246887349-246931439:+,saccharopine_dehydrogenase_(putative),SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-	DU4475_BREAST	0	0.01	0.0234	FALSE	0	0	0	2	0	FALSE	ACH-000258
DU4475_BREAST	SERPINI1--GOLIM4	1	1	SERPINI1	8966	chr3:167525129:+	GOLIM4	17077	chr3:167766153:-	ONLY_REF_SPLICE	YES	4705	1111	0	0	0.0117	0.0117	SERPINI1->chr3:167453031-167543356:+,serpin_family_I_member_1,GOLIM4->chr3:167726465-167813763:-,golgi_integral_membrane_protein_4	DU4475_BREAST	0	0	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	TNK2--TFRC	1	1	TNK2	17505	chr3:195605124:-	TFRC	31029	chr3:195803993:-	ONLY_REF_SPLICE	YES	50	59	0.04	0.03	0.0117	0.0117	TNK2->chr3:195590235-195638816:-,tyrosine_kinase_non_receptor_2,TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor	DU4475_BREAST	0.03	0.04	0.0234	TRUE	0	0	0	1	0	FALSE	ACH-000258
DU4475_BREAST	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	40	0	0.05	1	0.0117	0.0117	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	DU4475_BREAST	0.05	1	0.0234	FALSE	272	151	14	158	0	FALSE	ACH-000258
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--IGKJ4	2051	7	IGKV1-39	1521	chr2:89619384:-	IGKJ4	4522	chr2:89160435:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	19.1483	0.0654	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Esophagus=[count:3=pct:0.7],Blood=[count:2=pct:1.1],Skin=[count:2=pct:0.6],Whole_Blood=[count:2=pct:1.5],Lung=[count:2=pct:1.2],Thyroid=[count:2=pct:1.1],Heart=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},HGNC_GENEFAM,IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	19.2137	FALSE	19	310	15	1	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	116	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.083	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.083	TRUE	0	0	0	518	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	94	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.97	0.8776	0.2054	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	1.083	TRUE	508	994	45	981	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	60	15	PTMA	6054	chr2:232576687:+	ANP32B	17703	chr9:100773556:+	INCL_NON_REF_SPLICE	YES	6210	1301	0.01	0.05	0.5602	0.14	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.7002	TRUE	0	0	0	4	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	47	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4388	0.056	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4948	FALSE	499	1288	110	792	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	47	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	194	4	0.2	0.92	0.4388	0.0093	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.92	0.4481	TRUE	519	3926	326	965	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	43	12	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	23	25	0.71	0.69	0.4015	0.112	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.71	0.5135	TRUE	181	1564	124	196	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRSF2--CD79A	41	0	SRSF2	2110	chr17:74732347:-	CD79A	7455	chr19:42381384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3828	0	SRSF2->Oncogene{Bushman},chr17:74730197-74733456:-,serine/arginine-rich_splicing_factor_2,CD79A->ArcherDX_panel,CD79a_molecule,FoundationOne_panel,Oncogene{Bushman},chr19:42381190-42385439:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3828	TRUE	0	0	0	1	0	TRUE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	31	22	PTMA	6593	chr2:232577226:+	ANP32B	17732	chr9:100773585:+	INCL_NON_REF_SPLICE	YES	6777	1138	0.01	0.04	0.2894	0.2054	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.4948	TRUE	0	0	0	4	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	29	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2707	0.0467	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3174	FALSE	462	80	0	856	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	23	16	PTMA	6060	chr2:232576693:+	ANP32B	17709	chr9:100773562:+	INCL_NON_REF_SPLICE	YES	6679	1259	0.01	0.03	0.2147	0.1494	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.3641	TRUE	0	0	0	4	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	23	10	PTMA	6054	chr2:232576687:+	ANP32B	17763	chr9:100773616:+	INCL_NON_REF_SPLICE	YES	6210	1225	0.01	0.03	0.2147	0.0934	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.3081	TRUE	0	0	0	4	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	21	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.1961	0.1587	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.3548	FALSE	499	1288	110	792	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	17	27	PTMA	6593	chr2:232577226:+	ANP32B	17714	chr9:100773567:+	INCL_NON_REF_SPLICE	YES	6777	1193	0.01	0.04	0.1587	0.2521	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.4108	TRUE	0	0	0	4	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	19	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	42	1594	0.32	0.01	0.1774	0.0093	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.32	0.1867	TRUE	0	0	0	434	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	19	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1774	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1774	TRUE	46	1352	75	139	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	17	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1587	0.0654	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2241	FALSE	499	1288	110	792	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	14	9	PTMA	6054	chr2:232576687:+	ANP32B	17787	chr9:100773640:+	INCL_NON_REF_SPLICE	YES	6210	1159	0	0.02	0.1307	0.084	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.2147	TRUE	0	0	0	4	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	16	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1494	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1494	TRUE	0	0	0	100	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	16	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1494	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1494	TRUE	0	0	0	518	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	15	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.14	0.0093	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1493	TRUE	477	1352	189	275	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	24	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0.2241	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2988	FALSE	499	1288	110	792	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	7	15	PTMA	6593	chr2:232577226:+	ANP32B	17795	chr9:100773648:+	INCL_NON_REF_SPLICE	YES	6777	1159	0	0.02	0.0654	0.14	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.2054	TRUE	0	0	0	4	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	30	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.028	0.2801	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.3081	FALSE	499	1288	110	792	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	10	2	PTMA	6054	chr2:232576687:+	ANP32B	19871	chr9:100777646:+	INCL_NON_REF_SPLICE	YES	6210	703	0	0.02	0.0934	0.0187	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.1121	TRUE	0	0	0	3	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	10	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0934	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0934	TRUE	0	5	1	24	1	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.084	0.028	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.112	FALSE	462	80	0	856	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	1	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0.0093	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.084	FALSE	499	1288	110	792	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	8	1	PTMA	6002	chr2:232576635:+	ANP32B	17714	chr9:100773567:+	INCL_NON_REF_SPLICE	YES	6166	1193	0	0.01	0.0747	0.0093	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.084	FALSE	0	0	0	4	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ND4L	7	4	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1166	0	0.01	1	0.0654	0.0373	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1027	FALSE	1	1	0	107	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE6B--PPP2R2D	8	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0747	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0747	TRUE	7	65	3	22	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	7	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	YES	44	1579	0.15	0.01	0.0654	0.0093	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.15	0.0747	FALSE	0	0	0	434	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	6	5	PTMA	6593	chr2:232577226:+	ANP32B	18858	chr9:100774742:+	INCL_NON_REF_SPLICE	YES	6777	745	0	0.01	0.056	0.0467	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1027	TRUE	0	0	0	3	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	7	0	PTMA	6024	chr2:232576657:+	ANP32B	19883	chr9:100777658:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0654	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0654	TRUE	0	0	0	3	0	TRUE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	3	15	PTMA	6065	chr2:232576698:+	ANP32B	17741	chr9:100773594:+	INCL_NON_REF_SPLICE	YES	6873	1268	0	0.01	0.028	0.14	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.168	TRUE	0	0	0	4	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	5	5	PTMA	6042	chr2:232576675:+	ANP32B	18817	chr9:100774701:+	INCL_NON_REF_SPLICE	YES	6089	1361	0	0.01	0.0467	0.0467	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0934	FALSE	0	0	0	3	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	3	13	PTMA	6056	chr2:232576689:+	ANP32B	17732	chr9:100773585:+	INCL_NON_REF_SPLICE	YES	6401	1138	0	0.01	0.028	0.1214	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1494	TRUE	0	0	0	4	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ATP8	6	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.056	FALSE	12	0	0	26	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--AC096579.7	1	20	IGKV1-39	1102	chr2:89619803:-	AC096579.7	7244	chr2:89157196:-	ONLY_REF_SPLICE	YES	19	0	0.53	1	0.0093	0.1867	GTEx_FI:{Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8]},IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),AC096579.7->chr2:89130700-89165653:-	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	1	0.196	TRUE	2	49	3	3	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	12	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.112	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.14	FALSE	499	1288	110	792	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.056	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.056	FALSE	462	80	0	856	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--IGKJ4	4	7	IGKV1-39	1520	chr2:89619385:-	IGKJ4	4521	chr2:89160436:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0.0654	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Esophagus=[count:3=pct:0.7],Blood=[count:2=pct:1.1],Skin=[count:2=pct:0.6],Whole_Blood=[count:2=pct:1.5],Lung=[count:2=pct:1.2],Thyroid=[count:2=pct:1.1],Heart=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},HGNC_GENEFAM,IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1027	FALSE	19	310	15	1	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	5	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0467	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0467	TRUE	0	0	0	434	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--MRPL3	5	0	RCC1	2175	chr1:28834672:+	MRPL3	27527	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0467	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0467	TRUE	0	0	0	6	0	TRUE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	4	3	PTMA	6532	chr2:232577165:+	ANP32B	19869	chr9:100777644:+	INCL_NON_REF_SPLICE	NO	5797	730	0	0.01	0.0373	0.028	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0653	FALSE	0	0	0	3	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	4	2	PTMA	6024	chr2:232576657:+	ANP32B	17772	chr9:100773625:+	INCL_NON_REF_SPLICE	YES	5812	1175	0	0.01	0.0373	0.0187	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.056	FALSE	0	0	0	4	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	1	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0.0093	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0466	FALSE	499	1288	110	792	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0373	TRUE	0	0	0	434	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDE6B--PPP2R2D	4	0	PDE6B	1510	chr4:619882:+	PPP2R2D	25830	chr10:133753533:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0373	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0373	TRUE	5	45	2	9	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	3	4	PTMA	6060	chr2:232576693:+	ANP32B	18853	chr9:100774737:+	INCL_NON_REF_SPLICE	YES	6679	852	0	0.01	0.028	0.0373	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0653	FALSE	0	0	0	3	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C20orf27--MT-ND4L	3	1	C20orf27	7217	chr20:3734540:-	MT-ND4L	10604	chrM:10471:+	INCL_NON_REF_SPLICE	YES	125	0	0.03	1	0.028	0.0093	C20orf27->chr20:3734155-3749034:-,chromosome_20_open_reading_frame_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0373	FALSE	0	0	0	6	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--RBCK1	3	1	DANCR	1530	chr4:53579126:+	RBCK1	11817	chr20:398170:+	ONLY_REF_SPLICE	YES	1351	103	0	0.04	0.028	0.0093	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,RBCK1->RANBP2-type_and_C3HC4-type_zinc_finger_containing_1,chr20:388142-411610:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.0373	FALSE	0	0	0	2	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	3	1	EEF2	8886	chr19:3977426:-	RPS28	13756	chr19:8386539:+	INCL_NON_REF_SPLICE	YES	2872	2	0	0.67	0.028	0.0093	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.67	0.0373	FALSE	0	0	0	100	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	1	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0.0093	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0373	FALSE	499	1288	110	792	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--CHMP1A	3	1	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	39	197	0.09	0.02	0.028	0.0093	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.09	0.0373	TRUE	1	20	1	28	3	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ATP8	3	0	CALM3	8081	chr19:47113583:+	MT-ATP8	11589	chrM:8406:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.028	FALSE	12	0	0	26	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	3	0	EEF2	8863	chr19:3977449:-	RPS28	13639	chr19:8386422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.028	TRUE	0	0	0	100	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1046	chrM:14628:-	MT-TE	4575	chrM:14693:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.028	FALSE	499	1288	110	792	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.028	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.028	FALSE	499	1288	110	792	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--MYC	2	4	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	30	33	0.17	0.15	0.0187	0.0373	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.17	0.056	TRUE	3	14	0	24	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV1-39--IGKJ4	1	7	IGKV1-39	1522	chr2:89619383:-	IGKJ4	4523	chr2:89160434:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0093	0.0654	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Esophagus=[count:3=pct:0.7],Blood=[count:2=pct:1.1],Skin=[count:2=pct:0.6],Whole_Blood=[count:2=pct:1.5],Lung=[count:2=pct:1.2],Thyroid=[count:2=pct:1.1],Heart=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},HGNC_GENEFAM,IGKV1-39->chr2:89619383-89619904:-,immunoglobulin_kappa_variable_1-39_(gene/pseudogene),IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0747	FALSE	19	310	15	1	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--EZH2	2	1	IGLL5	1480	chr22:23230439:+	EZH2	21519	chr7:148512638:-	ONLY_REF_SPLICE	YES	960	402	0	0.01	0.0187	0.0093	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.028	FALSE	0	0	0	2	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM120B--PSMB1	2	0	FAM120B	3590	chr6:170615930:+	PSMB1	23731	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},FAM120B->chr6:170599791-170716153:+,family_with_sequence_similarity_120B,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0187	TRUE	0	2	0	5	0	TRUE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	2	0	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0187	TRUE	274	363	69	150	0	FALSE	ACH-000402
BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC6A6--ARPC4	2	0	SLC6A6	14309	chr3:14513825:+	ARPC4	34165	chr3:9847894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0187	0	SLC6A6->chr3:14444076-14530857:+,solute_carrier_family_6_member_6,ARPC4->actin_related_protein_2/3_complex_subunit_4,chr3:9834179-9849410:+	BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0187	TRUE	0	0	0	1	0	TRUE	ACH-000402
NCIH1573_LUNG	EMC1--CAPZB	333	59	EMC1	16078	chr1:19553807:-	CAPZB	39272	chr1:19671746:-	ONLY_REF_SPLICE	YES	69	234	0.85	0.63	3.5101	0.6219	LOCAL_REARRANGEMENT:-:[87221],EMC1->ER_membrane_protein_complex_subunit_1,chr1:19542158-19578046:-,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	NCIH1573_LUNG	0.63	0.85	4.132	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TN	167	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.7603	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1573_LUNG	1	1	1.7603	FALSE	369	2501	205	193	0	FALSE	ACH-000916
NCIH1573_LUNG	PAPOLA--AK7	149	57	PAPOLA	21705	chr14:97018959:+	AK7	53995	chr14:96954295:+	ONLY_REF_SPLICE	YES	149	4	0.58	0.98	1.5706	0.6008	LOCAL_REARRANGEMENT:+:[12006],PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	NCIH1573_LUNG	0.58	0.98	2.1714	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	ARHGAP4--MECP2	118	51	ARHGAP4	1116	chrX:153200337:-	MECP2	30380	chrX:153298008:-	ONLY_REF_SPLICE	YES	297	28	0.36	0.86	1.2438	0.5376	LOCAL_REARRANGEMENT:-:[86572],ARHGAP4->Oncogene{Bushman},Rho_GTPase_activating_protein_4,chrX:153172821-153200452:-,MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2	NCIH1573_LUNG	0.36	0.86	1.7814	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	TFG--GPR128	114	32	TFG	5019	chr3:100438902:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	127	0	0.53	1	1.2017	0.3373	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	NCIH1573_LUNG	0.53	1	1.539	TRUE	12	123	7	17	0	FALSE	ACH-000916
NCIH1573_LUNG	TIMM23B--LINC00843	108	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1384	0.3057	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1573_LUNG	1	1	1.4441	TRUE	508	994	45	981	0	FALSE	ACH-000916
NCIH1573_LUNG	WBP1L--SUFU	99	39	WBP1L	1174	chr10:104503900:+	SUFU	21885	chr10:104375025:+	ONLY_REF_SPLICE	YES	61	8	0.69	0.95	1.0436	0.4111	WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+,SUFU->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SUFU_negative_regulator_of_hedgehog_signaling,chr10:104263744-104393292:+	NCIH1573_LUNG	0.69	0.95	1.4547	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	PAPOLA--AK7	81	13	PAPOLA	21705	chr14:97018959:+	AK7	54342	chr14:96954642:+	ONLY_REF_SPLICE	YES	149	21	0.39	0.82	0.8538	0.137	LOCAL_REARRANGEMENT:+:[12006],PAPOLA->chr14:96967770-97033448:+,poly(A)_polymerase_alpha,AK7->adenylate_kinase_7,chr14:96858448-96955764:+	NCIH1573_LUNG	0.39	0.82	0.9908	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TC	80	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8433	0.0843	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1573_LUNG	1	1	0.9276	FALSE	462	80	0	856	0	FALSE	ACH-000916
NCIH1573_LUNG	TIMM23--RP11-464F9.1	77	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	53	8	0.6	0.91	0.8117	0.0211	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1573_LUNG	0.6	0.91	0.8328	TRUE	519	3926	326	965	0	FALSE	ACH-000916
NCIH1573_LUNG	MYO6--SENP6	65	37	MYO6	1232	chr6:76459140:+	SENP6	71943	chr6:76421044:+	ONLY_REF_SPLICE	YES	28	68	0.78	0.6	0.6852	0.39	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[30912],MYO6->chr6:76458909-76629254:+,myosin_VI,SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+	NCIH1573_LUNG	0.6	0.78	1.0752	TRUE	0	1	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	FARP2--SNED1	65	17	FARP2	18844	chr2:242380971:+	SNED1	74948	chr2:242026807:+	ONLY_REF_SPLICE	YES	31	15	0.73	0.85	0.6852	0.1792	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+,SNED1->chr2:241938255-242034983:+,sushi,_nidogen_and_EGF_like_domains_1	NCIH1573_LUNG	0.73	0.85	0.8644	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	BCAP31--MECP2	60	15	BCAP31	8067	chrX:152967462:-	MECP2	21856	chrX:153298008:-	ONLY_REF_SPLICE	YES	364	28	0.17	0.73	0.6325	0.1581	BCAP31->B-cell_receptor-associated_protein_31,chrX:152965947-152990152:-,MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2	NCIH1573_LUNG	0.17	0.73	0.7906	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-ND6--MT-TE	51	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5376	0.0738	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1573_LUNG	1	1	0.6114	FALSE	499	1288	110	792	0	FALSE	ACH-000916
NCIH1573_LUNG	PPFIA1--RNF169	50	11	PPFIA1	21877	chr11:70194526:+	RNF169	49511	chr11:74545721:+	ONLY_REF_SPLICE	YES	147	27	0.29	0.69	0.527	0.116	PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,RNF169->chr11:74459913-74553458:+,ring_finger_protein_169	NCIH1573_LUNG	0.29	0.69	0.643	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TN	26	86	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2741	0.9065	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1573_LUNG	1	1	1.1806	FALSE	369	2501	205	193	0	FALSE	ACH-000916
NCIH1573_LUNG	OR51S1--TP53I11	43	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4533	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH1573_LUNG	1	1	0.4533	TRUE	402	216	10	229	0	FALSE	ACH-000916
NCIH1573_LUNG	RP11-123O10.4--GRIP1	37	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.39	0.0949	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1573_LUNG	1	1	0.4849	FALSE	416	2512	207	587	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	15	75	MT-CO3	1153	chrM:9359:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	4	0.96	0.96	0.1581	0.7906	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.96	0.96	0.9487	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-ND6--MT-TE	29	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.3057	0.1792	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1573_LUNG	0.94	1	0.4849	FALSE	499	1288	110	792	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TN	33	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3479	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1573_LUNG	1	1	0.3479	FALSE	369	2501	205	193	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TN	25	31	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2635	0.3268	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1573_LUNG	1	1	0.5903	FALSE	369	2501	205	193	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TN	26	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2741	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1573_LUNG	1	1	0.2741	FALSE	369	2501	205	193	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TN	14	45	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1476	0.4743	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1573_LUNG	1	1	0.6219	FALSE	369	2501	205	193	0	FALSE	ACH-000916
NCIH1573_LUNG	YIPF1--TMEM59	23	5	YIPF1	5047	chr1:54348786:-	TMEM59	18989	chr1:54513045:-	ONLY_REF_SPLICE	YES	49	580	0.36	0.05	0.2424	0.0527	{Klijn_CCL:Lung=1},YIPF1->Yip1_domain_family_member_1,chr1:54317392-54356407:-,TMEM59->chr1:54497347-54519177:-,transmembrane_protein_59	NCIH1573_LUNG	0.05	0.36	0.2951	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	5	74	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	5	1	0.94	0.99	0.0527	0.78	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.94	0.99	0.8327	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	4	75	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	4	0.96	0.95	0.0422	0.7906	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.95	0.96	0.8328	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	3	77	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	4	4	0.95	0.95	0.0316	0.8117	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.95	0.95	0.8433	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	3	77	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	4	1	0.95	0.99	0.0316	0.8117	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.95	0.99	0.8433	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TN	7	61	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0738	0.643	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1573_LUNG	1	1	0.7168	FALSE	369	2501	205	193	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	3	74	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	5	1	0.94	0.99	0.0316	0.78	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.94	0.99	0.8116	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	TULP3--FKBP4	20	6	TULP3	8621	chr12:3042696:+	FKBP4	20892	chr12:2907872:+	ONLY_REF_SPLICE	YES	22	208	0.54	0.11	0.2108	0.0632	LOCAL_REARRANGEMENT:+:[71813],TULP3->chr12:2986389-3050306:+,tubby_like_protein_3,FKBP4->FK506_binding_protein_4,chr12:2904119-2914576:+	NCIH1573_LUNG	0.11	0.54	0.274	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TC	19	9	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2003	0.0949	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1573_LUNG	1	1	0.2952	FALSE	462	80	0	856	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-ND6--MT-TE	19	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2003	0.0843	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1573_LUNG	1	1	0.2846	FALSE	499	1288	110	792	0	FALSE	ACH-000916
NCIH1573_LUNG	POLE4--HK2	20	3	POLE4	2655	chr2:75187273:+	HK2	15493	chr2:75101393:+	ONLY_REF_SPLICE	YES	115	35	0.17	0.4	0.2108	0.0316	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[65133],POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,HK2->chr2:75061108-75120486:+,hexokinase_2	NCIH1573_LUNG	0.17	0.4	0.2424	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	NIPA2--POLA1	20	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2108	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	NCIH1573_LUNG	1	1	0.2108	TRUE	46	1352	75	139	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	5	59	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	5	0	0.93	1	0.0527	0.6219	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.93	1	0.6746	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TN	12	31	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1265	0.3268	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1573_LUNG	1	1	0.4533	FALSE	369	2501	205	193	0	FALSE	ACH-000916
NCIH1573_LUNG	RP11-120D5.1--MID1	19	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	32	1	0.41	0.2003	0.0316	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1573_LUNG	0.41	1	0.2319	FALSE	16	356	14	466	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TN	7	41	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0738	0.4322	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1573_LUNG	1	1	0.506	FALSE	369	2501	205	193	0	FALSE	ACH-000916
NCIH1573_LUNG	DVL1--SSU72	16	3	DVL1	1455	chr1:1284276:-	SSU72	18764	chr1:1480382:-	ONLY_REF_SPLICE	YES	101	251	0.16	0.07	0.1687	0.0316	DVL1->chr1:1270656-1284730:-,dishevelled_segment_polarity_protein_1,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	NCIH1573_LUNG	0.07	0.16	0.2003	TRUE	0	1	0	1	1	TRUE	ACH-000916
NCIH1573_LUNG	BRWD3--HMGN5	13	13	BRWD3	36803	chrX:79939509:-	HMGN5	53077	chrX:80377171:-	ONLY_REF_SPLICE	YES	17	9	0.6	0.74	0.137	0.137	{Klijn_CCL:Lung=1},BRWD3->Oncogene{Bushman},bromodomain_and_WD_repeat_domain_containing_3,chrX:79926353-80065187:-,HMGN5->chrX:80369200-80457441:-,high_mobility_group_nucleosome_binding_domain_5	NCIH1573_LUNG	0.6	0.74	0.274	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TC	16	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1687	0.0105	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1573_LUNG	1	1	0.1792	FALSE	462	80	0	856	0	FALSE	ACH-000916
NCIH1573_LUNG	CTD-2337A12.1--CAST	16	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1687	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH1573_LUNG	1	1	0.1687	TRUE	347	1186	183	220	0	FALSE	ACH-000916
NCIH1573_LUNG	MAGI1--ATXN7	15	1	MAGI1	1839	chr3:66023671:-	ATXN7	50954	chr3:63884075:+	ONLY_REF_SPLICE	YES	14	2	0.53	0.89	0.1581	0.0105	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1},MAGI1->chr3:65339200-66024509:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_1,ATXN7->ataxin_7,chr3:63850233-63989138:+	NCIH1573_LUNG	0.53	0.89	0.1686	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	6	35	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	5	0	0.89	1	0.0632	0.3689	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.89	1	0.4321	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	EPB41L1--CNBD2	12	9	EPB41L1	9983	chr20:34713449:+	CNBD2	54372	chr20:34618279:+	ONLY_REF_SPLICE	YES	42	0	0.33	1	0.1265	0.0949	LOCAL_REARRANGEMENT:+:[60804],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,CNBD2->chr20:34556512-34618622:+,cyclic_nucleotide_binding_domain_containing_2	NCIH1573_LUNG	0.33	1	0.2214	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TN	14	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1476	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1573_LUNG	1	1	0.1476	FALSE	369	2501	205	193	0	FALSE	ACH-000916
NCIH1573_LUNG	ARHGAP4--MECP2	1	51	ARHGAP4	1116	chrX:153200337:-	MECP2	29268	chrX:153305354:-	ONLY_REF_SPLICE	NO	297	32	0.15	0.62	0.0105	0.5376	LOCAL_REARRANGEMENT:-:[86572],ARHGAP4->Oncogene{Bushman},Rho_GTPase_activating_protein_4,chrX:153172821-153200452:-,MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2	NCIH1573_LUNG	0.15	0.62	0.5481	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	BCAP31--MECP2	10	15	BCAP31	9102	chrX:152966396:-	MECP2	21856	chrX:153298008:-	INCL_NON_REF_SPLICE	YES	329	28	0.07	0.47	0.1054	0.1581	BCAP31->B-cell_receptor-associated_protein_31,chrX:152965947-152990152:-,MECP2->chrX:153287024-153363212:-,methyl-CpG_binding_protein_2	NCIH1573_LUNG	0.07	0.47	0.2635	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	EPB41L1--CNBD2	12	7	EPB41L1	8878	chr20:34710669:+	CNBD2	54372	chr20:34618279:+	ONLY_REF_SPLICE	YES	40	0	0.32	1	0.1265	0.0738	LOCAL_REARRANGEMENT:+:[60804],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,CNBD2->chr20:34556512-34618622:+,cyclic_nucleotide_binding_domain_containing_2	NCIH1573_LUNG	0.32	1	0.2003	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	7	27	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	6	0	0.85	1	0.0738	0.2846	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.85	1	0.3584	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	3	43	MT-CO3	1039	chrM:9245:+	MT-ATP6	5090	chrM:8832:+	INCL_NON_REF_SPLICE	YES	1	19	0.98	0.71	0.0316	0.4533	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.71	0.98	0.4849	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	RP11-96H19.1--RP11-446N19.1	12	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.1265	0.0632	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1573_LUNG	0.95	1	0.1897	FALSE	515	4851	409	746	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	6	29	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0632	0.3057	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.92	1	0.3689	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	13	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	4	0	0.78	1	0.137	0.0105	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.78	1	0.1475	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	RP11-155G15.2--RP11-1E3.1	12	2	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1265	0.0211	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NCIH1573_LUNG	1	1	0.1476	FALSE	46	201	11	112	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	7	21	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	6	0	0.82	1	0.0738	0.2214	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.82	1	0.2952	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TN	3	36	MT-TA	1057	chrM:5599:-	MT-TN	4097	chrM:5702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.3795	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1573_LUNG	1	1	0.4111	FALSE	369	2501	205	193	0	FALSE	ACH-000916
NCIH1573_LUNG	AGBL4--FAF1	11	3	AGBL4	1151	chr1:50489435:-	FAF1	28729	chr1:51323669:-	ONLY_REF_SPLICE	YES	2	22	0.88	0.39	0.116	0.0316	YOSHIHARA_TCGA_num_samples[BRCA:1|PRAD:1],{Klijn_CCL:Breast=1},AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	NCIH1573_LUNG	0.39	0.88	0.1476	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	3	34	MT-CO3	1031	chrM:9237:+	MT-ATP6	4754	chrM:8496:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0.3584	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	1	1	0.39	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	9	10	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.0949	0.1054	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.86	1	0.2003	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-ND6--MT-TE	3	33	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0316	0.3479	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1573_LUNG	0.92	1	0.3795	FALSE	499	1288	110	792	0	FALSE	ACH-000916
NCIH1573_LUNG	ATE1--KIAA1598	9	8	ATE1	13134	chr10:123596233:-	KIAA1598	24177	chr10:118808021:-	ONLY_REF_SPLICE	YES	18	0	0.49	1	0.0949	0.0843	ATE1->arginyltransferase_1,chr10:123499939-123688316:-,KIAA1598->chr10:118643742-118886097:-	NCIH1573_LUNG	0.49	1	0.1792	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	NRIP1--AF127936.7	11	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.116	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1573_LUNG	1	1	0.116	FALSE	292	1546	117	613	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	4	27	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	NO	0	1	1	0.97	0.0422	0.2846	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.97	1	0.3268	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	C15orf57--CBX3	10	1	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	50	20	0.18	0.35	0.1054	0.0105	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1573_LUNG	0.18	0.35	0.1159	TRUE	267	562	48	632	0	FALSE	ACH-000916
NCIH1573_LUNG	EPB41L1--CNBD2	9	4	EPB41L1	5683	chr20:34700402:+	CNBD2	54372	chr20:34618279:+	ONLY_REF_SPLICE	YES	27	0	0.33	1	0.0949	0.0422	LOCAL_REARRANGEMENT:+:[60804],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,CNBD2->chr20:34556512-34618622:+,cyclic_nucleotide_binding_domain_containing_2	NCIH1573_LUNG	0.33	1	0.1371	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-ND6--MT-TE	10	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1054	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1573_LUNG	1	1	0.1054	FALSE	499	1288	110	792	0	FALSE	ACH-000916
NCIH1573_LUNG	VTI1A--RP11-57H14.3	10	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1054	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH1573_LUNG	1	1	0.1054	FALSE	272	151	14	158	0	FALSE	ACH-000916
NCIH1573_LUNG	RP11-30J20.1--RP11-431D12.1	9	2	RP11-30J20.1	2293	chr8:137549302:+	RP11-431D12.1	19777	chr8:137528209:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0949	0.0211	LOCAL_REARRANGEMENT:+:[922],RP11-30J20.1->chr8:137543041-137997178:+,RP11-431D12.1->chr8:137501691-137542119:+	NCIH1573_LUNG	1	1	0.116	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-ND6--MT-TE	4	21	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0.2214	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1573_LUNG	1	1	0.2636	FALSE	499	1288	110	792	0	FALSE	ACH-000916
NCIH1573_LUNG	EPB41L1--CNBD2	6	12	EPB41L1	11138	chr20:34742818:+	CNBD2	54372	chr20:34618279:+	ONLY_REF_SPLICE	YES	46	0	0.28	1	0.0632	0.1265	LOCAL_REARRANGEMENT:+:[60804],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,CNBD2->chr20:34556512-34618622:+,cyclic_nucleotide_binding_domain_containing_2	NCIH1573_LUNG	0.28	1	0.1897	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TN	9	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0949	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1573_LUNG	1	1	0.0949	FALSE	369	2501	205	193	0	FALSE	ACH-000916
NCIH1573_LUNG	MYO6--SENP6	5	16	MYO6	1232	chr6:76459140:+	SENP6	73032	chr6:76423229:+	ONLY_REF_SPLICE	YES	28	65	0.43	0.24	0.0527	0.1687	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[30912],MYO6->chr6:76458909-76629254:+,myosin_VI,SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+	NCIH1573_LUNG	0.24	0.43	0.2214	TRUE	0	1	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	ATE1--KIAA1598	7	7	ATE1	13134	chr10:123596233:-	KIAA1598	26799	chr10:118738819:-	ONLY_REF_SPLICE	YES	18	110	0.44	0.11	0.0738	0.0738	ATE1->arginyltransferase_1,chr10:123499939-123688316:-,KIAA1598->chr10:118643742-118886097:-	NCIH1573_LUNG	0.11	0.44	0.1476	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MYO6--SENP6	8	3	MYO6	1232	chr6:76459140:+	SENP6	74345	chr6:76425101:+	ONLY_REF_SPLICE	YES	28	60	0.28	0.15	0.0843	0.0316	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[30912],MYO6->chr6:76458909-76629254:+,myosin_VI,SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+	NCIH1573_LUNG	0.15	0.28	0.1159	TRUE	0	1	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-ND6--MT-TE	6	10	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0.1054	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1573_LUNG	1	1	0.1686	FALSE	499	1288	110	792	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-ATP6--MT-CO1	8	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0843	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1573_LUNG	1	1	0.0843	FALSE	183	104	9	328	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	8	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0843	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	1	1	0.0843	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	6	7	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	4	0	0.76	1	0.0632	0.0738	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.76	1	0.137	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TC	5	11	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0.116	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1573_LUNG	1	1	0.1687	FALSE	462	80	0	856	0	FALSE	ACH-000916
NCIH1573_LUNG	RP11-96H19.1--RP11-446N19.1	6	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0632	0.0738	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1573_LUNG	1	1	0.137	FALSE	467	2173	244	435	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-ND6--MT-TE	5	10	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0.1054	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1573_LUNG	1	1	0.1581	FALSE	499	1288	110	792	0	FALSE	ACH-000916
NCIH1573_LUNG	LHFPL2--ARSB	7	1	LHFPL2	4775	chr5:77944322:-	ARSB	32229	chr5:78135249:-	ONLY_REF_SPLICE	YES	33	26	0.2	0.24	0.0738	0.0105	LOCAL_REARRANGEMENT:-:[7188],LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,ARSB->arylsulfatase_B,chr5:78073032-78281910:-	NCIH1573_LUNG	0.2	0.24	0.0843	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-ND6--MT-TE	5	9	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0.0949	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1573_LUNG	1	1	0.1476	FALSE	499	1288	110	792	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-ND6--MT-TE	3	17	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.87	1	0.0316	0.1792	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1573_LUNG	0.87	1	0.2108	FALSE	499	1288	110	792	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	7	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0738	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	1	1	0.0738	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-ND6--MT-TE	7	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0738	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1573_LUNG	1	1	0.0738	FALSE	499	1288	110	792	0	FALSE	ACH-000916
NCIH1573_LUNG	RP11-1E3.1--RP11-455B3.1	7	0	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0738	0	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	NCIH1573_LUNG	1	1	0.0738	TRUE	13	49	2	38	0	FALSE	ACH-000916
NCIH1573_LUNG	UVRAG--TBX10	6	4	UVRAG	23629	chr11:75827059:+	TBX10	34544	chr11:67400574:-	ONLY_REF_SPLICE	YES	25	0	0.29	1	0.0632	0.0422	UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+,TBX10->T-box_10,chr11:67398774-67407031:-	NCIH1573_LUNG	0.29	1	0.1054	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	4	10	MT-CO3	1005	chrM:9211:+	MT-ATP6	5314	chrM:9056:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.93	0.0422	0.1054	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.93	1	0.1476	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	AGBL4--RP11-567C20.3	6	0	AGBL4	2274	chr1:50317068:-	RP11-567C20.3	28162	chr1:50671980:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0632	0	AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,RP11-567C20.3->chr1:50671756-50688799:-	NCIH1573_LUNG	1	1	0.0632	TRUE	0	1	0	2	1	TRUE	ACH-000916
NCIH1573_LUNG	SLC1A5--MT-ND4L	6	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0632	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1573_LUNG	1	1	0.0632	FALSE	0	0	0	189	0	FALSE	ACH-000916
NCIH1573_LUNG	KANSL1--LRRC37A	5	2	KANSL1	8599	chr17:44230270:-	LRRC37A	37753	chr17:44377160:+	ONLY_REF_SPLICE	YES	34	18	0.17	0.28	0.0527	0.0211	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	NCIH1573_LUNG	0.17	0.28	0.0738	TRUE	9	6	1	5	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	4	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	3	0	0.77	1	0.0422	0.0632	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.77	1	0.1054	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	RP11-120D5.1--MID1	5	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	32	0.86	0.16	0.0527	0.0105	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1573_LUNG	0.16	0.86	0.0632	FALSE	0	48	1	163	0	FALSE	ACH-000916
NCIH1573_LUNG	AC003084.2--PRPF40A	5	0	AC003084.2	1880	chr7:117643220:-	PRPF40A	18353	chr2:153530220:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0527	0	AC003084.2->chr7:117638912-117644099:-,PRPF40A->chr2:153508107-153574511:-,pre-mRNA_processing_factor_40_homolog_A	NCIH1573_LUNG	1	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-ATP6--MT-CO1	5	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1573_LUNG	1	1	0.0527	FALSE	183	104	9	328	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	3	8	MT-CO3	1032	chrM:9238:+	MT-ATP6	5397	chrM:9139:+	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0316	0.0843	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.92	1	0.1159	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	NRIP1--AF127936.7	4	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.33	1	0.0422	0.0316	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1573_LUNG	0.33	1	0.0738	FALSE	164	806	69	479	0	FALSE	ACH-000916
NCIH1573_LUNG	MYO6--SENP6	3	6	MYO6	1232	chr6:76459140:+	SENP6	73194	chr6:76423391:+	ONLY_REF_SPLICE	YES	28	48	0.24	0.16	0.0316	0.0632	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],LOCAL_REARRANGEMENT:+:[30912],MYO6->chr6:76458909-76629254:+,myosin_VI,SENP6->SUMO1/sentrin_specific_peptidase_6,chr6:76311225-76427997:+	NCIH1573_LUNG	0.16	0.24	0.0948	TRUE	0	1	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	4	1	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.0422	0.0105	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.56	1	0.0527	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1134	chrM:8660:+	MT-CO1	5163	chrM:6385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1573_LUNG	1	1	0.0422	FALSE	183	104	9	328	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1032	chrM:9238:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	1	1	0.0422	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1573_LUNG	1	1	0.0422	FALSE	499	1288	110	792	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1573_LUNG	1	1	0.0422	FALSE	499	1288	110	792	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TN	4	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1573_LUNG	1	1	0.0422	FALSE	369	2501	205	193	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0422	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1573_LUNG	1	1	0.0422	FALSE	369	2501	205	193	0	FALSE	ACH-000916
NCIH1573_LUNG	PPFIA1--RNF169	1	12	PPFIA1	22994	chr11:70196145:+	RNF169	49511	chr11:74545721:+	ONLY_REF_SPLICE	NO	152	27	0.08	0.33	0.0105	0.1265	PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,RNF169->chr11:74459913-74553458:+,ring_finger_protein_169	NCIH1573_LUNG	0.08	0.33	0.137	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	RP11-120D5.1--MID1	3	4	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	0	32	1	0.18	0.0316	0.0422	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1573_LUNG	0.18	1	0.0738	FALSE	0	9	0	55	0	FALSE	ACH-000916
NCIH1573_LUNG	RP11-353N4.6--SEC22B	4	0	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0422	0	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	NCIH1573_LUNG	1	1	0.0422	TRUE	49	42	7	43	0	FALSE	ACH-000916
NCIH1573_LUNG	RP11-96H19.1--RP11-446N19.1	2	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0211	0.0843	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1573_LUNG	1	1	0.1054	FALSE	192	492	57	212	0	FALSE	ACH-000916
NCIH1573_LUNG	RP11-96H19.1--RP11-446N19.1	2	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0.0843	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1573_LUNG	1	1	0.1054	FALSE	76	45	6	15	0	FALSE	ACH-000916
NCIH1573_LUNG	BRWD3--HMGN5	2	7	BRWD3	35650	chrX:79940961:-	HMGN5	53077	chrX:80377171:-	ONLY_REF_SPLICE	YES	58	9	0.13	0.5	0.0211	0.0738	{Klijn_CCL:Lung=1},BRWD3->Oncogene{Bushman},bromodomain_and_WD_repeat_domain_containing_3,chrX:79926353-80065187:-,HMGN5->chrX:80369200-80457441:-,high_mobility_group_nucleosome_binding_domain_5	NCIH1573_LUNG	0.13	0.5	0.0949	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-ATP6--MT-CO1	3	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2462	17809	0	0	0.0316	0.0316	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1573_LUNG	0	0	0.0632	FALSE	183	104	9	328	0	FALSE	ACH-000916
NCIH1573_LUNG	RP11-114H23.1--PHLDA1	3	2	RP11-114H23.1	1295	chr12:76377501:-	PHLDA1	15133	chr12:76423872:-	ONLY_REF_SPLICE	YES	0	194	1	0.03	0.0316	0.0211	LOCAL_REARRANGEMENT:-:[41432],RP11-114H23.1->chr12:75956982-76377795:-,PHLDA1->chr12:76419227-76427712:-,pleckstrin_homology_like_domain_family_A_member_1	NCIH1573_LUNG	0.03	1	0.0527	TRUE	0	0	0	1	0	FALSE	ACH-000916
NCIH1573_LUNG	RP11-123O10.4--GRIP1	3	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0.0211	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1573_LUNG	1	1	0.0527	FALSE	93	270	15	244	0	FALSE	ACH-000916
NCIH1573_LUNG	AC002066.1--AC073130.1	3	1	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	6	0	0.4	1	0.0316	0.0105	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	NCIH1573_LUNG	0.4	1	0.0421	FALSE	0	3	0	33	0	FALSE	ACH-000916
NCIH1573_LUNG	BRWD3--HMGN5	1	9	BRWD3	36723	chrX:79939589:-	HMGN5	53077	chrX:80377171:-	ONLY_REF_SPLICE	YES	39	9	0.2	0.53	0.0105	0.0949	{Klijn_CCL:Lung=1},BRWD3->Oncogene{Bushman},bromodomain_and_WD_repeat_domain_containing_3,chrX:79926353-80065187:-,HMGN5->chrX:80369200-80457441:-,high_mobility_group_nucleosome_binding_domain_5	NCIH1573_LUNG	0.2	0.53	0.1054	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	EPB41L1--RP4-550H1.4	3	1	EPB41L1	5683	chr20:34700402:+	RP4-550H1.4	41494	chr20:34662229:+	ONLY_REF_SPLICE	YES	27	0	0.13	1	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[6244],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,RP4-550H1.4->chr20:34660363-34673182:+	NCIH1573_LUNG	0.13	1	0.0421	TRUE	0	0	0	2	0	TRUE	ACH-000916
NCIH1573_LUNG	IL17B--CSNK1A1	3	1	IL17B	1095	chr5:148783671:-	CSNK1A1	17390	chr5:148892739:-	INCL_NON_REF_SPLICE	YES	0	296	1	0.01	0.0316	0.0105	LOCAL_REARRANGEMENT:-:[87995],IL17B->chr5:148750887-148783765:-,interleukin_17B,CSNK1A1->Oncogene{Bushman},casein_kinase_1_alpha_1,chr5:148871760-148931007:-	NCIH1573_LUNG	0.01	1	0.0421	FALSE	0	0	0	1	0	FALSE	ACH-000916
NCIH1573_LUNG	KANSL1--LRRC37A	3	1	KANSL1	7536	chr17:44248221:-	LRRC37A	37753	chr17:44377160:+	ONLY_REF_SPLICE	YES	31	18	0.11	0.18	0.0316	0.0105	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	NCIH1573_LUNG	0.11	0.18	0.0421	TRUE	5	10	0	8	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1205	chrM:8731:+	MT-CO1	4739	chrM:5961:+	INCL_NON_REF_SPLICE	YES	9344	0	0	1	0.0316	0.0105	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1573_LUNG	0	1	0.0421	FALSE	182	97	9	327	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	4	0	0.5	1	0.0316	0.0105	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	0.5	1	0.0421	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	RP11-123O10.4--GRIP1	1	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0105	0.0949	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1573_LUNG	1	1	0.1054	FALSE	9	21	5	22	0	FALSE	ACH-000916
NCIH1573_LUNG	CYFIP1--AKR1A1	3	0	CYFIP1	5447	chr15:22928477:+	AKR1A1	43922	chr1:46032322:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	CYFIP1->chr15:22892005-23006016:+,cytoplasmic_FMR1_interacting_protein_1,AKR1A1->aldo-keto_reductase_family_1,_member_A1_(aldehyde_reductase),chr1:46016215-46035721:+	NCIH1573_LUNG	1	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1573_LUNG	1	1	0.0316	FALSE	183	104	9	328	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH1573_LUNG	1	1	0.0316	FALSE	189	492	56	216	0	FALSE	ACH-000916
NCIH1573_LUNG	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0316	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1573_LUNG	1	1	0.0316	FALSE	369	2501	205	193	0	FALSE	ACH-000916
NCIH1573_LUNG	RP11-120D5.1--MID1	2	4	RP11-120D5.1	10152	chrX:10878163:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	0	18	1	0.25	0.0211	0.0422	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1573_LUNG	0.25	1	0.0633	FALSE	0	0	0	3	0	FALSE	ACH-000916
NCIH1573_LUNG	ATE1--VAX1	2	2	ATE1	13134	chr10:123596233:-	VAX1	27677	chr10:118891988:-	ONLY_REF_SPLICE	YES	18	0	0.18	1	0.0211	0.0211	ATE1->arginyltransferase_1,chr10:123499939-123688316:-,VAX1->chr10:118888032-118897812:-,ventral_anterior_homeobox_1	NCIH1573_LUNG	0.18	1	0.0422	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	CYP24A1--AC093323.3	2	1	CYP24A1	10936	chr20:52773708:-	AC093323.3	17964	chr4:6676720:+	ONLY_REF_SPLICE	YES	1239	65	0	0.04	0.0211	0.0105	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,AC093323.3->chr4:6675178-6677774:+	NCIH1573_LUNG	0	0.04	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000916
NCIH1573_LUNG	EPB41L1--RP4-550H1.4	2	1	EPB41L1	2310	chr20:34680735:+	RP4-550H1.4	41494	chr20:34662229:+	ONLY_REF_SPLICE	YES	19	0	0.14	1	0.0211	0.0105	LOCAL_REARRANGEMENT:+:[6244],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,RP4-550H1.4->chr20:34660363-34673182:+	NCIH1573_LUNG	0.14	1	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	KANSL1--LRRC37A	2	1	KANSL1	8599	chr17:44230270:-	LRRC37A	41698	chr17:44399688:+	ONLY_REF_SPLICE	YES	34	19	0.08	0.14	0.0211	0.0105	GTEx_FI:{Brain=[count:8=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Blood_Vessel=[count:3=pct:0.8],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Ovary=2,Artery_-_Aorta=2,Brain_-_Cerebellar_Hemisphere=2,Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:-:+:[67366],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	NCIH1573_LUNG	0.08	0.14	0.0316	TRUE	2	2	0	6	0	FALSE	ACH-000916
NCIH1573_LUNG	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0211	0.0105	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1573_LUNG	0.3	1	0.0316	FALSE	125	705	46	456	0	FALSE	ACH-000916
NCIH1573_LUNG	PPFIA1--RNF169	2	1	PPFIA1	19550	chr11:70189998:+	RNF169	49511	chr11:74545721:+	ONLY_REF_SPLICE	YES	180	27	0.02	0.1	0.0211	0.0105	PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,RNF169->chr11:74459913-74553458:+,ring_finger_protein_169	NCIH1573_LUNG	0.02	0.1	0.0316	TRUE	0	0	0	1	0	FALSE	ACH-000916
NCIH1573_LUNG	CPSF6--ANXA2	2	0	CPSF6	11046	chr12:69656342:+	ANXA2	36653	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,ANXA2->annexin_A2,chr15:60639333-60695082:-	NCIH1573_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	CPSF6--NR0B1	2	0	CPSF6	11046	chr12:69656342:+	NR0B1	23329	chrX:30322940:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,NR0B1->chrX:30322323-30327715:-,nuclear_receptor_subfamily_0_group_B_member_1	NCIH1573_LUNG	1	1	0.0211	TRUE	0	1	0	8	0	TRUE	ACH-000916
NCIH1573_LUNG	EPB41L1--CNBD2	1	4	EPB41L1	6790	chr20:34701721:+	CNBD2	54372	chr20:34618279:+	ONLY_REF_SPLICE	YES	32	0	0.14	1	0.0105	0.0422	LOCAL_REARRANGEMENT:+:[60804],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,CNBD2->chr20:34556512-34618622:+,cyclic_nucleotide_binding_domain_containing_2	NCIH1573_LUNG	0.14	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	MAGI1--ATXN7	2	0	MAGI1	1839	chr3:66023671:-	ATXN7	54350	chr3:63938055:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1},MAGI1->chr3:65339200-66024509:-,membrane_associated_guanylate_kinase,_WW_and_PDZ_domain_containing_1,ATXN7->ataxin_7,chr3:63850233-63989138:+	NCIH1573_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	PRSS22--OBSCN	2	0	PRSS22	1148	chr16:2908024:-	OBSCN	12082	chr1:228401142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	PRSS22->chr16:2902728-2908171:-,protease,_serine_22,OBSCN->Oncogene{Bushman},chr1:228395831-228566577:+,obscurin,_cytoskeletal_calmodulin_and_titin-interacting_RhoGEF	NCIH1573_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	RP11-120D5.1--MID1	1	4	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	32	1	0.14	0.0105	0.0422	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1573_LUNG	0.14	1	0.0527	FALSE	2	31	0	60	0	FALSE	ACH-000916
NCIH1573_LUNG	UGDH--SMIM14	2	0	UGDH	2029	chr4:39528903:-	SMIM14	19868	chr4:39606800:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	LOCAL_REARRANGEMENT:-:[18019],UGDH->UDP-glucose_6-dehydrogenase,chr4:39500375-39529931:-,SMIM14->chr4:39547950-39640710:-,small_integral_membrane_protein_14	NCIH1573_LUNG	1	1	0.0211	TRUE	0	1	0	4	0	TRUE	ACH-000916
NCIH1573_LUNG	YIPF1--TMEM59	2	0	YIPF1	5047	chr1:54348786:-	TMEM59	22356	chr1:54509198:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0211	0	{Klijn_CCL:Lung=1},YIPF1->Yip1_domain_family_member_1,chr1:54317392-54356407:-,TMEM59->chr1:54497347-54519177:-,transmembrane_protein_59	NCIH1573_LUNG	1	1	0.0211	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	ATE1--VAX1	1	3	ATE1	13134	chr10:123596233:-	VAX1	25571	chr10:118894094:-	ONLY_REF_SPLICE	NO	18	1	0.18	0.8	0.0105	0.0316	ATE1->arginyltransferase_1,chr10:123499939-123688316:-,VAX1->chr10:118888032-118897812:-,ventral_anterior_homeobox_1	NCIH1573_LUNG	0.18	0.8	0.0421	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	AGBL4--FAF1	1	2	AGBL4	1151	chr1:50489435:-	FAF1	29798	chr1:51267349:-	ONLY_REF_SPLICE	YES	2	39	0.6	0.07	0.0105	0.0211	YOSHIHARA_TCGA_num_samples[BRCA:1|PRAD:1],{Klijn_CCL:Breast=1},AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	NCIH1573_LUNG	0.07	0.6	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	C6orf62--FAM65B	1	1	C6orf62	6732	chr6:24709005:-	FAM65B	40359	chr6:24810035:-	ONLY_REF_SPLICE	YES	119	0	0.02	1	0.0105	0.0105	LOCAL_REARRANGEMENT:-:[76537],C6orf62->chr6:24705089-24721064:-,chromosome_6_open_reading_frame_62,FAM65B->chr6:24797601-25042238:-,family_with_sequence_similarity_65_member_B	NCIH1573_LUNG	0.02	1	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000916
NCIH1573_LUNG	CYP24A1--BMI1	1	1	CYP24A1	10936	chr20:52773708:-	BMI1	19156	chr10:22615360:+	ONLY_REF_SPLICE	YES	1239	47	0	0.04	0.0105	0.0105	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	NCIH1573_LUNG	0	0.04	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000916
NCIH1573_LUNG	EPB41L1--CNBD2	1	1	EPB41L1	1372	chr20:34679797:+	CNBD2	54372	chr20:34618279:+	ONLY_REF_SPLICE	YES	3	0	0.4	1	0.0105	0.0105	LOCAL_REARRANGEMENT:+:[60804],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,CNBD2->chr20:34556512-34618622:+,cyclic_nucleotide_binding_domain_containing_2	NCIH1573_LUNG	0.4	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	EPB41L1--RP4-550H1.4	1	1	EPB41L1	11138	chr20:34742818:+	RP4-550H1.4	41494	chr20:34662229:+	ONLY_REF_SPLICE	NO	46	0	0.04	1	0.0105	0.0105	LOCAL_REARRANGEMENT:+:[6244],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,RP4-550H1.4->chr20:34660363-34673182:+	NCIH1573_LUNG	0.04	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	EPB41L1--RP4-550H1.4	1	1	EPB41L1	9983	chr20:34713449:+	RP4-550H1.4	41494	chr20:34662229:+	ONLY_REF_SPLICE	YES	42	0	0.05	1	0.0105	0.0105	LOCAL_REARRANGEMENT:+:[6244],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,RP4-550H1.4->chr20:34660363-34673182:+	NCIH1573_LUNG	0.05	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	EPB41L1--RP4-550H1.4	1	1	EPB41L1	8878	chr20:34710669:+	RP4-550H1.4	41494	chr20:34662229:+	ONLY_REF_SPLICE	YES	40	0	0.05	1	0.0105	0.0105	LOCAL_REARRANGEMENT:+:[6244],EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,RP4-550H1.4->chr20:34660363-34673182:+	NCIH1573_LUNG	0.05	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	GCNT3--TTLL1	1	1	GCNT3	6273	chr15:59904180:+	TTLL1	25749	chr22:43447893:-	ONLY_REF_SPLICE	YES	167	40	0.01	0.05	0.0105	0.0105	GCNT3->Oncogene{Bushman},chr15:59887074-59932438:+,glucosaminyl_(N-acetyl)_transferase_3,_mucin_type,TTLL1->chr22:43435522-43485434:-,tubulin_tyrosine_ligase_like_1	NCIH1573_LUNG	0.01	0.05	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000916
NCIH1573_LUNG	IL17B--CSNK1A1	1	1	IL17B	1095	chr5:148783671:-	CSNK1A1	17357	chr5:148892772:-	ONLY_REF_SPLICE	YES	0	339	1	0.01	0.0105	0.0105	LOCAL_REARRANGEMENT:-:[87995],IL17B->chr5:148750887-148783765:-,interleukin_17B,CSNK1A1->Oncogene{Bushman},casein_kinase_1_alpha_1,chr5:148871760-148931007:-	NCIH1573_LUNG	0.01	1	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000916
NCIH1573_LUNG	IMMP2L--AC003088.1	1	1	IMMP2L	12890	chr7:110526649:-	AC003088.1	21020	chr7:110151171:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0105	0.0105	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	NCIH1573_LUNG	0.2	1	0.021	TRUE	1	0	0	1	0	TRUE	ACH-000916
NCIH1573_LUNG	RP11-476K15.1--CTD-2015H3.2	1	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0105	0.0105	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCIH1573_LUNG	0.25	1	0.021	FALSE	0	46	0	73	0	FALSE	ACH-000916
NCIH1573_LUNG	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0105	0.0105	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1573_LUNG	1	1	0.021	TRUE	62	24	1	171	0	FALSE	ACH-000916
NCIH1573_LUNG	UBE2G2--DOCK1	1	1	UBE2G2	7524	chr21:46197214:-	DOCK1	18485	chr10:128768966:+	ONLY_REF_SPLICE	YES	167	38	0.01	0.05	0.0105	0.0105	UBE2G2->chr21:46188955-46221934:-,ubiquitin_conjugating_enzyme_E2_G2,DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1	NCIH1573_LUNG	0.01	0.05	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000916
NCIH1573_LUNG	UVSSA--MAEA	1	1	UVSSA	7499	chr4:1349033:+	MAEA	26629	chr4:1305767:+	ONLY_REF_SPLICE	YES	40	13	0.05	0.13	0.0105	0.0105	GTEx_FI:{Blood=[count:5=pct:2.9],Skin=[count:4=pct:1.3],Small_Intestine=[count:2=pct:3.6],Lung=[count:2=pct:1.2],Whole_Blood=[count:1=pct:0.8],Colon=[count:1=pct:0.5],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Whole_Blood=1},LOCAL_REARRANGEMENT:+:[7119],UVSSA->UV_stimulated_scaffold_protein_A,chr4:1341054-1381837:+,MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher	NCIH1573_LUNG	0.05	0.13	0.021	TRUE	2	0	0	5	0	FALSE	ACH-000916
HEC108_ENDOMETRIUM	TIMM23B--LINC00843	127	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2995	0.2354	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HEC108_ENDOMETRIUM	1	1	1.5349	TRUE	508	994	45	981	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	DTX2P1--PRKRIP1	82	8	DTX2P1	11762	chr7:76641336:+	PRKRIP1	25356	chr7:102016270:+	ONLY_REF_SPLICE	YES	5	72	0.95	0.56	0.8391	0.0819	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	HEC108_ENDOMETRIUM	0.56	0.95	0.921	TRUE	0	0	0	3	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	TIMM23--RP11-464F9.1	74	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	108	5	0.41	0.94	0.7572	0.0205	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HEC108_ENDOMETRIUM	0.41	0.94	0.7777	TRUE	519	3926	326	965	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND6--MT-TE	71	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7265	0.0409	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC108_ENDOMETRIUM	1	1	0.7674	FALSE	499	1288	110	792	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	64	10	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	65	56	0.53	0.57	0.6549	0.1023	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.53	0.57	0.7572	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	RP11-123O10.4--GRIP1	61	13	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6242	0.133	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HEC108_ENDOMETRIUM	1	1	0.7572	FALSE	416	2512	207	587	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	SHISA9--U91319.1	55	11	SHISA9	9974	chr16:13297406:+	U91319.1	22587	chr16:13444037:+	ONLY_REF_SPLICE	YES	72	0	0.48	1	0.5628	0.1126	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	HEC108_ENDOMETRIUM	0.48	1	0.6754	FALSE	4	37	0	19	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND4--MT-ND4L	6	169	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	19	0	0.9	1	0.0614	1.7293	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC108_ENDOMETRIUM	0.9	1	1.7907	FALSE	344	826	44	306	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND4--MT-ND4L	5	171	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	34	0	0.84	1	0.0512	1.7498	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC108_ENDOMETRIUM	0.84	1	1.801	FALSE	344	826	44	306	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND4--MT-ND4L	4	171	MT-ND4	1242	chrM:11001:+	MT-ND4L	5450	chrM:10541:+	INCL_NON_REF_SPLICE	YES	48	0	0.78	1	0.0409	1.7498	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC108_ENDOMETRIUM	0.78	1	1.7907	FALSE	344	827	44	306	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND4--MT-ND4L	3	173	MT-ND4	1499	chrM:11258:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	685	0	0.2	1	0.0307	1.7702	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC108_ENDOMETRIUM	0.2	1	1.8009	FALSE	344	827	44	306	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND4--MT-ND4L	3	172	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	38	0	0.82	1	0.0307	1.76	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC108_ENDOMETRIUM	0.82	1	1.7907	FALSE	344	827	44	306	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	CRISPLD2--CDH13	43	9	CRISPLD2	11157	chr16:84888435:+	CDH13	50439	chr16:83520082:+	ONLY_REF_SPLICE	YES	134	0	0.28	1	0.44	0.0921	CRISPLD2->chr16:84853590-84954374:+,cysteine_rich_secretory_protein_LCCL_domain_containing_2,CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+	HEC108_ENDOMETRIUM	0.28	1	0.5321	TRUE	0	0	0	1	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	MT-TA--MT-TC	39	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3991	0.0716	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC108_ENDOMETRIUM	1	1	0.4707	FALSE	462	80	0	856	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND6--MT-TE	33	20	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.3377	0.2047	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC108_ENDOMETRIUM	0.96	1	0.5424	FALSE	499	1288	110	792	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND4--MT-ND4L	9	114	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	5453	0	0.02	1	0.0921	1.1665	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC108_ENDOMETRIUM	0.02	1	1.2586	FALSE	344	827	44	306	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND4--MT-ND4L	5	121	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	9	0	0.93	1	0.0512	1.2382	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC108_ENDOMETRIUM	0.93	1	1.2894	FALSE	344	821	44	306	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	RP11-421F16.3--SUMO3	35	0	RP11-421F16.3	1829	chr12:27125347:+	SUMO3	11565	chr21:46228445:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3581	0	RP11-421F16.3->chr12:27124519-27132515:+,SUMO3->chr21:46225532-46238694:-,small_ubiquitin-like_modifier_3	HEC108_ENDOMETRIUM	1	1	0.3581	TRUE	0	0	0	3	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	29	6	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	60	39	0.37	0.47	0.2967	0.0614	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.37	0.47	0.3581	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND6--MT-TE	29	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2967	0.0409	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC108_ENDOMETRIUM	1	1	0.3376	FALSE	499	1288	110	792	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	NRIP1--AF127936.7	22	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	1	0.83	0.96	0.2251	0.0307	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC108_ENDOMETRIUM	0.83	0.96	0.2558	FALSE	292	1546	117	613	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	19	14	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	65	33	0.34	0.5	0.1944	0.1433	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.34	0.5	0.3377	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	GOLGA3--NDUFA10	22	0	GOLGA3	27277	chr12:133349158:-	NDUFA10	39955	chr2:240953518:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2251	0	GOLGA3->chr12:133345495-133405444:-,golgin_A3,NDUFA10->NADH:ubiquinone_oxidoreductase_subunit_A10,chr2:240831867-240964819:-	HEC108_ENDOMETRIUM	1	1	0.2251	TRUE	0	0	0	1	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND4--MT-ND4L	14	24	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	586	0	0.06	1	0.1433	0.2456	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC108_ENDOMETRIUM	0.06	1	0.3889	FALSE	344	827	44	306	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	17	11	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	65	44	0.3	0.39	0.174	0.1126	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.3	0.39	0.2866	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	15	13	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	65	35	0.3	0.44	0.1535	0.133	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.3	0.44	0.2865	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	15	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.92	1	0.1535	0.0921	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC108_ENDOMETRIUM	0.92	1	0.2456	FALSE	407	2205	196	549	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	16	3	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	54	39	0.26	0.33	0.1637	0.0307	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.26	0.33	0.1944	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	ANP32B--APP	16	0	ANP32B	8117	chr9:100773588:+	APP	24334	chr21:27394347:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1637	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	HEC108_ENDOMETRIUM	1	1	0.1637	TRUE	0	0	0	7	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	10	17	MT-ATP6	1249	chrM:8775:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	101	44	0.21	0.38	0.1023	0.174	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.21	0.38	0.2763	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND4--MT-ND4L	8	24	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	955	0	0.03	1	0.0819	0.2456	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC108_ENDOMETRIUM	0.03	1	0.3275	FALSE	344	827	44	306	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	RP11-275N1.1--NEBL	12	6	RP11-275N1.1	2205	chr10:21658896:-	NEBL	14143	chr10:21309130:-	ONLY_REF_SPLICE	YES	1	66	0.95	0.21	0.1228	0.0614	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	HEC108_ENDOMETRIUM	0.21	0.95	0.1842	TRUE	0	0	0	3	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	11	4	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	105	226	0.12	0.06	0.1126	0.0409	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.06	0.12	0.1535	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND6--MT-TE	12	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1228	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC108_ENDOMETRIUM	1	1	0.1228	FALSE	499	1288	110	792	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	SHISA9--U91319.1	9	12	SHISA9	9974	chr16:13297406:+	U91319.1	21484	chr16:13352190:+	ONLY_REF_SPLICE	YES	72	0	0.23	1	0.0921	0.1228	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	HEC108_ENDOMETRIUM	0.23	1	0.2149	FALSE	0	14	0	12	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND4--MT-ND4L	3	35	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	5071	0	0.01	1	0.0307	0.3581	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC108_ENDOMETRIUM	0.01	1	0.3888	FALSE	344	827	44	306	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	APP--MT-CO3	8	13	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	4345	13725	0	0	0.0819	0.133	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HEC108_ENDOMETRIUM	0	0	0.2149	FALSE	0	0	0	26	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND6--MT-TE	4	28	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0409	0.2865	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC108_ENDOMETRIUM	0.94	1	0.3274	FALSE	499	1288	110	792	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND6--MT-TE	4	28	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0409	0.2865	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC108_ENDOMETRIUM	0.94	1	0.3274	FALSE	499	1288	110	792	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	10	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	33	33	0.28	0.28	0.1023	0.0307	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.28	0.28	0.133	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	9	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0921	0.0512	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC108_ENDOMETRIUM	0.88	1	0.1433	FALSE	515	4851	409	746	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	APP--MT-CO3	7	12	APP	11652	chr21:27394197:-	MT-CO3	32390	chrM:9421:+	INCL_NON_REF_SPLICE	YES	4739	13866	0	0	0.0716	0.1228	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HEC108_ENDOMETRIUM	0	0	0.1944	FALSE	0	0	0	26	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND6--MT-TE	3	28	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0307	0.2865	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC108_ENDOMETRIUM	0.91	1	0.3172	FALSE	499	1288	110	792	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-TA--MT-TC	8	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0819	0.0716	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC108_ENDOMETRIUM	1	1	0.1535	FALSE	462	80	0	856	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	3	26	MT-ATP6	1575	chrM:9101:+	MT-CO2	4747	chrM:7651:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0307	0.266	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.97	1	0.2967	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND4--MT-ND4L	3	24	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	36	0	0.43	1	0.0307	0.2456	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC108_ENDOMETRIUM	0.43	1	0.2763	FALSE	344	826	44	306	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND6--MT-TE	4	20	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0.2047	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC108_ENDOMETRIUM	1	1	0.2456	FALSE	499	1288	110	792	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	NRIP1--AF127936.7	7	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	54	1	0.22	0.94	0.0716	0.0819	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC108_ENDOMETRIUM	0.22	0.94	0.1535	FALSE	164	806	69	479	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	8	3	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	56	40	0.16	0.22	0.0819	0.0307	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.16	0.22	0.1126	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND6--MT-TE	5	15	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0512	0.1535	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC108_ENDOMETRIUM	1	1	0.2047	FALSE	499	1288	110	792	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	NRIP1--AF127936.7	7	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	39	1	0.25	0.93	0.0716	0.0614	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEC108_ENDOMETRIUM	0.25	0.93	0.133	FALSE	125	705	46	456	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	8	1	MT-ATP6	1142	chrM:8668:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	60	241	0.13	0.04	0.0819	0.0102	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.04	0.13	0.0921	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	ANP32B--APP	8	0	ANP32B	8117	chr9:100773588:+	APP	24322	chr21:27394359:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0819	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	HEC108_ENDOMETRIUM	1	1	0.0819	TRUE	0	0	0	7	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	C15orf57--CBX3	7	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	32	14	0.26	0.44	0.0716	0.0409	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEC108_ENDOMETRIUM	0.26	0.44	0.1125	TRUE	267	562	48	632	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND4--MT-ND4L	5	12	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	79	0	0.18	1	0.0512	0.1228	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC108_ENDOMETRIUM	0.18	1	0.174	FALSE	344	827	44	306	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND6--MT-TE	3	20	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0.2047	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC108_ENDOMETRIUM	1	1	0.2354	FALSE	499	1288	110	792	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND6--MT-TE	8	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0819	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC108_ENDOMETRIUM	1	1	0.0819	FALSE	499	1288	110	792	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	7	3	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	33	35	0.23	0.22	0.0716	0.0307	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.22	0.23	0.1023	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND4--MT-ND4L	5	10	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	10	0	0.6	1	0.0512	0.1023	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC108_ENDOMETRIUM	0.6	1	0.1535	FALSE	344	826	44	306	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	APP--MT-CO3	5	9	APP	11625	chr21:27394224:-	MT-CO3	32364	chrM:9395:+	INCL_NON_REF_SPLICE	YES	4128	12403	0	0	0.0512	0.0921	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HEC108_ENDOMETRIUM	0	0	0.1433	FALSE	0	0	0	26	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	6	5	MT-ATP6	1516	chrM:9042:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	9	226	0.55	0.05	0.0614	0.0512	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.05	0.55	0.1126	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	7	1	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	54	241	0.13	0.03	0.0716	0.0102	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.03	0.13	0.0818	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND6--MT-TE	3	16	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0.1637	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC108_ENDOMETRIUM	1	1	0.1944	FALSE	499	1288	110	792	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	6	3	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	33	33	0.21	0.21	0.0614	0.0307	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.21	0.21	0.0921	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND4--MT-ND4L	4	11	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0.1126	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC108_ENDOMETRIUM	1	1	0.1535	FALSE	344	821	44	306	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	RP11-123O10.4--GRIP1	5	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0512	0.0716	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HEC108_ENDOMETRIUM	0.92	1	0.1228	FALSE	93	270	15	244	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	APP--MT-ND2	6	1	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	4345	3797	0	0	0.0614	0.0102	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HEC108_ENDOMETRIUM	0	0	0.0716	FALSE	0	1	0	51	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	DTX2P1--PRKRIP1	4	9	DTX2P1	19696	chr7:76673095:+	PRKRIP1	24253	chr7:102006421:+	INCL_NON_REF_SPLICE	YES	0	108	1	0.11	0.0409	0.0921	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	HEC108_ENDOMETRIUM	0.11	1	0.133	TRUE	0	0	0	2	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	DTX2P1--PRKRIP1	4	9	DTX2P1	14033	chr7:76645172:+	PRKRIP1	24253	chr7:102006421:+	ONLY_REF_SPLICE	YES	18	108	0.42	0.11	0.0409	0.0921	DTX2P1->DTX2_pseudogene_1,chr7:76607934-76673092:+,PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+	HEC108_ENDOMETRIUM	0.11	0.42	0.133	TRUE	0	0	0	2	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0614	0.0102	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC108_ENDOMETRIUM	1	1	0.0716	FALSE	462	80	0	856	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	P2RY11--MT-ND4L	6	1	P2RY11	3959	chr19:10225349:+	MT-ND4L	7660	chrM:10471:+	INCL_NON_REF_SPLICE	YES	109	0	0.06	1	0.0614	0.0102	P2RY11->chr19:10222214-10226048:+,purinergic_receptor_P2Y11,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC108_ENDOMETRIUM	0.06	1	0.0716	FALSE	0	0	0	1	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	ANP32B--APP	6	0	ANP32B	8123	chr9:100773594:+	APP	24331	chr21:27394350:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0614	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	HEC108_ENDOMETRIUM	1	1	0.0614	TRUE	0	0	0	7	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	5	4	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	57	50	0.14	0.15	0.0512	0.0409	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.14	0.15	0.0921	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	RP11-275N1.1--NEBL	4	8	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	1	24	0.92	0.33	0.0409	0.0819	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	HEC108_ENDOMETRIUM	0.33	0.92	0.1228	TRUE	0	2	0	25	2	FALSE	ACH-000990
HEC108_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	3	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.0307	0.1023	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC108_ENDOMETRIUM	0.87	1	0.133	FALSE	275	511	55	178	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	APP--MT-ND2	5	1	APP	11619	chr21:27394230:-	MT-ND2	32998	chrM:5292:+	INCL_NON_REF_SPLICE	YES	4054	4573	0	0	0.0512	0.0102	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HEC108_ENDOMETRIUM	0	0	0.0614	FALSE	0	1	0	51	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	GNPNAT1--TXNDC16	5	1	GNPNAT1	1241	chr14:53258146:-	TXNDC16	35390	chr14:52899305:-	ONLY_REF_SPLICE	YES	19	36	0.24	0.14	0.0512	0.0102	GNPNAT1->chr14:53241912-53258386:-,glucosamine-phosphate_N-acetyltransferase_1,TXNDC16->chr14:52897308-53019240:-,thioredoxin_domain_containing_16	HEC108_ENDOMETRIUM	0.14	0.24	0.0614	TRUE	0	0	0	1	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	3	9	MT-ATP6	1555	chrM:9081:+	MT-CO2	4955	chrM:7859:+	INCL_NON_REF_SPLICE	YES	5	148	0.71	0.07	0.0307	0.0921	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.07	0.71	0.1228	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	ANP32B--APP	5	0	ANP32B	8117	chr9:100773588:+	APP	24361	chr21:27394320:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0512	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	HEC108_ENDOMETRIUM	1	1	0.0512	TRUE	0	0	0	7	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	C20orf27--MT-ND4L	5	0	C20orf27	7217	chr20:3734540:-	MT-ND4L	10604	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0512	0	C20orf27->chr20:3734155-3749034:-,chromosome_20_open_reading_frame_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC108_ENDOMETRIUM	1	1	0.0512	FALSE	0	0	0	6	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	4	3	MT-ATP6	1123	chrM:8649:+	MT-CO2	4811	chrM:7715:+	INCL_NON_REF_SPLICE	YES	56	21	0.11	0.25	0.0409	0.0307	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.11	0.25	0.0716	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	2	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0.1023	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC108_ENDOMETRIUM	1	1	0.1228	FALSE	192	492	57	212	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	4	1	MT-ATP6	1072	chrM:8598:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	NO	24	8	0.17	0.38	0.0409	0.0102	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.17	0.38	0.0511	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	4	1	MT-ATP6	1123	chrM:8649:+	MT-CO2	5045	chrM:7949:+	INCL_NON_REF_SPLICE	YES	56	8	0.08	0.38	0.0409	0.0102	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.08	0.38	0.0511	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4937	chrM:7841:+	INCL_NON_REF_SPLICE	NO	33	132	0.13	0.04	0.0409	0.0102	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.04	0.13	0.0511	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	4	1	MT-ATP6	1118	chrM:8644:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	34	223	0.13	0.02	0.0409	0.0102	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.02	0.13	0.0511	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	VTI1A--RP11-57H14.3	4	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	34	0	0.13	1	0.0409	0.0102	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HEC108_ENDOMETRIUM	0.13	1	0.0511	FALSE	272	151	14	158	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	ANP32B--APP	4	0	ANP32B	8117	chr9:100773588:+	APP	24337	chr21:27394344:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0409	0	GTEx&tcga_normals:2/3694=0.05%,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	HEC108_ENDOMETRIUM	1	1	0.0409	TRUE	0	0	0	7	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	VGLL4--RAB33A	4	0	VGLL4	17693	chr3:11643307:-	RAB33A	30432	chrX:129318259:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0409	0	VGLL4->chr3:11597544-11762220:-,vestigial_like_family_member_4,RAB33A->RAB33A,_member_RAS_oncogene_family,chrX:129305623-129318844:+	HEC108_ENDOMETRIUM	1	1	0.0409	TRUE	0	0	0	1	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	3	3	MT-ATP6	1237	chrM:8763:+	MT-CO2	4983	chrM:7887:+	INCL_NON_REF_SPLICE	YES	100	179	0.06	0.03	0.0307	0.0307	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.03	0.06	0.0614	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	3	2	MT-ATP6	1169	chrM:8695:+	MT-CO2	5026	chrM:7930:+	INCL_NON_REF_SPLICE	YES	68	243	0.07	0.02	0.0307	0.0205	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.02	0.07	0.0512	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	ACTR3C--RP11-728K20.1	3	1	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	15	0	0.21	1	0.0307	0.0102	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	HEC108_ENDOMETRIUM	0.21	1	0.0409	TRUE	0	5	0	16	1	TRUE	ACH-000990
HEC108_ENDOMETRIUM	CTD-2337A12.1--CAST	3	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	26	1	0.13	0.0307	0.0102	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HEC108_ENDOMETRIUM	0.13	1	0.0409	TRUE	347	1186	183	220	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	3	1	MT-ATP6	1147	chrM:8673:+	MT-CO2	4970	chrM:7874:+	INCL_NON_REF_SPLICE	YES	59	165	0.06	0.02	0.0307	0.0102	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.02	0.06	0.0409	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ATP6--MT-CO2	3	1	MT-ATP6	1098	chrM:8624:+	MT-CO2	4969	chrM:7873:+	INCL_NON_REF_SPLICE	YES	30	164	0.12	0.02	0.0307	0.0102	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HEC108_ENDOMETRIUM	0.02	0.12	0.0409	FALSE	59	21	0	114	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	KIF1C--INCA1	3	0	KIF1C	3405	chr17:4903647:+	INCA1	29459	chr17:4893560:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0307	0	LOCAL_INVERSION:+:-:[338],KIF1C->chr17:4901243-4931696:+,kinesin_family_member_1C,INCA1->chr17:4891425-4900905:-,inhibitor_of_CDK,_cyclin_A1_interacting_protein_1	HEC108_ENDOMETRIUM	1	1	0.0307	TRUE	0	0	0	1	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND4--MT-ND4L	3	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC108_ENDOMETRIUM	1	1	0.0307	FALSE	344	821	44	306	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0307	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC108_ENDOMETRIUM	1	1	0.0307	FALSE	499	1288	110	792	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	TULP4--RP11-732M18.3	3	0	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0307	0	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	HEC108_ENDOMETRIUM	1	1	0.0307	TRUE	126	140	6	21	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	RP11-275N1.1--NEBL	1	6	RP11-275N1.1	3264	chr10:21657426:-	NEBL	14143	chr10:21309130:-	ONLY_REF_SPLICE	NO	0	66	1	0.1	0.0102	0.0614	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	HEC108_ENDOMETRIUM	0.1	1	0.0716	TRUE	0	0	0	1	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0102	0.0614	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC108_ENDOMETRIUM	1	1	0.0716	FALSE	467	2173	244	435	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	GNPNAT1--TXNDC16	2	1	GNPNAT1	2280	chr14:53254551:-	TXNDC16	35390	chr14:52899305:-	ONLY_REF_SPLICE	YES	24	36	0.11	0.08	0.0205	0.0102	GNPNAT1->chr14:53241912-53258386:-,glucosamine-phosphate_N-acetyltransferase_1,TXNDC16->chr14:52897308-53019240:-,thioredoxin_domain_containing_16	HEC108_ENDOMETRIUM	0.08	0.11	0.0307	TRUE	0	0	0	1	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	RP11-120D5.1--MID1	2	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0205	0.0102	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEC108_ENDOMETRIUM	0.6	1	0.0307	FALSE	16	356	14	466	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	COPS2--MYEF2	2	0	COPS2	1137	chr15:49447722:-	MYEF2	21695	chr15:48461036:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx&tcga_normals:1/3694=0.03%,COPS2->COP9_signalosome_subunit_2,Oncogene{Bushman},chr15:49398268-49447858:-,MYEF2->chr15:48431625-48470714:-,myelin_expression_factor_2	HEC108_ENDOMETRIUM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	PINX1--RP1L1	2	0	PINX1	6234	chr8:10683662:-	RP1L1	17312	chr8:10480730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	NEIGHBORS[52776],PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	HEC108_ENDOMETRIUM	1	1	0.0205	FALSE	1	8	0	15	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	SAMD12--HMGB1	2	0	SAMD12	1192	chr8:119634043:-	HMGB1	25504	chr13:31037831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,HMGB1->Oncogene{Bushman},chr13:31032884-31191734:-,high_mobility_group_box_1	HEC108_ENDOMETRIUM	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	SHISA9--U91319.1	1	2	SHISA9	7683	chr16:13010672:+	U91319.1	24024	chr16:13568067:+	ONLY_REF_SPLICE	YES	111	1	0.03	0.75	0.0102	0.0205	NEIGHBORS[5901],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,U91319.1->chr16:13340173-13656775:+	HEC108_ENDOMETRIUM	0.03	0.75	0.0307	FALSE	0	1	0	6	0	FALSE	ACH-000990
HEC108_ENDOMETRIUM	BTBD3--TASP1	1	1	BTBD3	1232	chr20:11871602:+	TASP1	25295	chr20:13550233:-	ONLY_REF_SPLICE	YES	9	7	0.18	0.22	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Minor_Salivary_Gland=1},BTBD3->BTB_domain_containing_3,chr20:11871371-11907257:+,TASP1->chr20:13246709-13619587:-,taspase_1	HEC108_ENDOMETRIUM	0.18	0.22	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000990
HEC108_ENDOMETRIUM	UBAP1--UBE2R2	1	1	UBAP1	1236	chr9:34179238:+	UBE2R2	16187	chr9:33886879:+	ONLY_REF_SPLICE	NO	46	42	0.04	0.05	0.0102	0.0102	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Muscle=[count:6=pct:2.6],Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4]},GTEx_v2:{count=2;pct=0.02%;dist=Vagina=1,Muscle_-_Skeletal=1},UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	HEC108_ENDOMETRIUM	0.04	0.05	0.0204	TRUE	8	5	0	9	0	FALSE	ACH-000990
BICR18_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	75	46	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	27	38	0.82	0.76	0.5157	0.3163	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	BICR18_UPPER_AERODIGESTIVE_TRACT	0.76	0.82	0.832	TRUE	181	1564	124	196	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	NUP188--NUP214	62	31	NUP188	29228	chr9:131764255:+	NUP214	44735	chr9:134010285:+	ONLY_REF_SPLICE	YES	47	16	0.66	0.85	0.4263	0.2131	NUP188->chr9:131709978-131769375:+,nucleoporin_188kDa,NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa	BICR18_UPPER_AERODIGESTIVE_TRACT	0.66	0.85	0.6394	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	27	143	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	9823	0	0.02	1	0.1856	0.9832	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.02	1	1.1688	FALSE	344	827	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	48	45	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	16115	0	0.01	1	0.33	0.3094	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.6394	FALSE	328	800	43	304	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	209	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	101	0	0.68	1	0.0413	1.437	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.68	1	1.4783	FALSE	344	826	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	209	MT-ND4	1209	chrM:10968:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	105	0	0.67	1	0.0344	1.437	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.67	1	1.4714	FALSE	344	826	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	209	MT-ND4	1170	chrM:10929:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	83	0	0.72	1	0.0275	1.437	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.72	1	1.4645	FALSE	344	826	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	204	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	45	1	0.82	1	0.0344	1.4026	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.82	1	1.437	FALSE	344	826	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	209	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	112	0	0.65	1	0.0206	1.437	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.65	1	1.4576	FALSE	344	827	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	209	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	69	0	0.75	1	0.0206	1.437	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.75	1	1.4576	FALSE	344	826	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	209	MT-ND4	1222	chrM:10981:+	MT-ND4L	5447	chrM:10538:+	INCL_NON_REF_SPLICE	YES	115	0	0.65	1	0.0206	1.437	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.65	1	1.4576	FALSE	344	827	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	202	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	44	0	0.82	1	0.0206	1.3888	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.82	1	1.4094	FALSE	344	826	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	SWAP70--C11orf49	48	17	SWAP70	2343	chr11:9715833:+	C11orf49	42920	chr11:47181320:+	INCL_NON_REF_SPLICE	YES	34	19	0.66	0.77	0.33	0.1169	SWAP70->Oncogene{Bushman},SWAP_switching_B-cell_complex_70kDa_subunit,chr11:9685624-9774538:+,C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49	BICR18_UPPER_AERODIGESTIVE_TRACT	0.66	0.77	0.4469	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	178	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	30	0	0.86	1	0.0206	1.2238	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.86	1	1.2444	FALSE	344	826	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	156	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	26	0	0.86	1	0.0413	1.0726	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.86	1	1.1139	FALSE	344	821	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	POM121B--RPL37A	36	15	POM121B	8774	chr7:72716342:+	RPL37A	12583	chr2:217363566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2475	0.1031	POM121B->POM121_transmembrane_nucleoporin_B_(pseudogene),chr7:72707497-72716496:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.3506	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MTAP--CDKN2B-AS1	33	13	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	42981	chr9:22118643:+	ONLY_REF_SPLICE	YES	14	0	0.77	1	0.2269	0.0894	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	BICR18_UPPER_AERODIGESTIVE_TRACT	0.77	1	0.3163	FALSE	0	0	0	1	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	131	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	242	0	0.36	1	0.0206	0.9007	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.36	1	0.9213	FALSE	344	827	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	34	6	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2338	0.0413	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.2751	TRUE	508	994	45	981	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	26	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1788	0.0344	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.2132	FALSE	462	80	0	856	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	VCL--ADK	18	14	VCL	2333	chr10:75802911:+	ADK	43773	chr10:76429941:+	ONLY_REF_SPLICE	YES	96	36	0.25	0.47	0.1238	0.0963	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[31042],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ADK->adenosine_kinase,chr10:75910960-76469061:+	BICR18_UPPER_AERODIGESTIVE_TRACT	0.25	0.47	0.2201	FALSE	0	0	0	1	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	14	28	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	108	0	0.28	1	0.0963	0.1925	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.28	1	0.2888	FALSE	344	826	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	TOMM40--G6PC3	17	14	TOMM40	4498	chr19:45397323:+	G6PC3	14885	chr17:42151528:+	ONLY_REF_SPLICE	YES	217	10	0.12	0.76	0.1169	0.0963	TOMM40->chr19:45393826-45406946:+,translocase_of_outer_mitochondrial_membrane_40,G6PC3->chr17:42148103-42153709:+,glucose_6_phosphatase_catalytic_subunit_3	BICR18_UPPER_AERODIGESTIVE_TRACT	0.12	0.76	0.2132	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	20	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	16921	66	0	0.24	0.1375	0.0069	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR18_UPPER_AERODIGESTIVE_TRACT	0	0.24	0.1444	FALSE	230	193	14	283	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	KCNQ5--VMP1	17	10	KCNQ5	1796	chr6:73332315:+	VMP1	31095	chr17:57808782:+	ONLY_REF_SPLICE	YES	6	41	0.82	0.4	0.1169	0.0688	KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	BICR18_UPPER_AERODIGESTIVE_TRACT	0.4	0.82	0.1857	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	12	30	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1793	0	0.02	1	0.0825	0.2063	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.02	1	0.2888	FALSE	344	827	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	45	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1604	0	0.03	1	0.0481	0.3094	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.03	1	0.3575	FALSE	344	827	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	60	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	26	0	0.71	1	0.0206	0.4125	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.71	1	0.4331	FALSE	344	821	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	C7orf60--IMMP2L	15	9	C7orf60	5088	chr7:112535624:-	IMMP2L	27510	chr7:110303777:-	ONLY_REF_SPLICE	YES	33	19	0.42	0.56	0.1031	0.0619	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Frontal_Cortex_(BA9)=1},C7orf60->chr7:112459202-112579971:-,IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2	BICR18_UPPER_AERODIGESTIVE_TRACT	0.42	0.56	0.165	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	10	24	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	97	0	0.26	1	0.0688	0.165	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.26	1	0.2338	FALSE	344	826	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	13	12	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	207	0	0.11	1	0.0894	0.0825	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.11	1	0.1719	FALSE	344	827	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	RP11-114H23.1--RP11-114H23.2	11	10	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0756	0.0688	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.1444	FALSE	81	155	12	160	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	13	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	26	1833	0.35	0.01	0.0894	0.0069	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BICR18_UPPER_AERODIGESTIVE_TRACT	0.01	0.35	0.0963	FALSE	0	0	0	434	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	32	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	20	0	0.65	1	0.0344	0.22	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.65	1	0.2544	FALSE	344	821	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	28	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	105	0	0.24	1	0.0413	0.1925	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.24	1	0.2338	FALSE	344	826	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	11	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0756	0.0275	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.1031	FALSE	462	80	0	856	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	TOMM40--G6PC3	10	7	TOMM40	4498	chr19:45397323:+	G6PC3	15405	chr17:42152048:+	ONLY_REF_SPLICE	YES	217	7	0.07	0.71	0.0688	0.0481	TOMM40->chr19:45393826-45406946:+,translocase_of_outer_mitochondrial_membrane_40,G6PC3->chr17:42148103-42153709:+,glucose_6_phosphatase_catalytic_subunit_3	BICR18_UPPER_AERODIGESTIVE_TRACT	0.07	0.71	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	30	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9187	0	0	1	0.0275	0.2063	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0	1	0.2338	FALSE	344	827	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	11	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0756	0.0138	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.0894	FALSE	416	2512	207	587	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	10	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	22	1	0.33	0.0688	0.0069	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BICR18_UPPER_AERODIGESTIVE_TRACT	0.33	1	0.0757	TRUE	465	1949	224	605	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	AP000525.9--LA16c-60G3.6	10	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0688	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.0688	TRUE	0	42	0	133	42	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	9	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16866	72	0	0.12	0.0619	0.0069	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR18_UPPER_AERODIGESTIVE_TRACT	0	0.12	0.0688	FALSE	230	198	14	283	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	DNMT3A--HADHA	9	0	DNMT3A	1765	chr2:25564695:-	HADHA	39757	chr2:26427065:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0619	0	DNMT3A->ArcherDX_panel,DNA_(cytosine-5-)-methyltransferase_3_alpha,FoundationOne_panel,Oncogene{Bushman},chr2:25455845-25565459:-,HADHA->chr2:26413504-26467594:-,hydroxyacyl-CoA_dehydrogenase/3-ketoacyl-CoA_thiolase/enoyl-CoA_hydratase_(trifunctional_protein),_alpha_subunit	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.0619	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	FBXL2--TOPAZ1	7	4	FBXL2	10864	chr3:33406211:+	TOPAZ1	35454	chr3:44308489:+	ONLY_REF_SPLICE	YES	11	0	0.5	1	0.0481	0.0275	FBXL2->F-box_and_leucine-rich_repeat_protein_2,chr3:33318517-33445154:+,TOPAZ1->chr3:44283378-44373590:+,testis_and_ovary_specific_PAZ_domain_containing_1	BICR18_UPPER_AERODIGESTIVE_TRACT	0.5	1	0.0756	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.055	FALSE	344	821	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	12	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	99	0	0.15	1	0.0344	0.0825	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.15	1	0.1169	FALSE	344	826	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MTAP--CDKN2B-AS1	6	8	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	44105	chr9:22120199:+	ONLY_REF_SPLICE	YES	14	5	0.5	0.74	0.0413	0.055	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	BICR18_UPPER_AERODIGESTIVE_TRACT	0.5	0.74	0.0963	FALSE	0	5	0	4	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	RP11-403B2.7--RP11-403B2.6	6	7	RP11-403B2.7	1254	chr15:20961259:-	RP11-403B2.6	7754	chr15:20965236:-	ONLY_REF_SPLICE	YES	6	1	0.68	0.93	0.0413	0.0481	GTEx_FI:{Brain=[count:17=pct:2.6],Esophagus=[count:15=pct:3.7],Blood_Vessel=[count:8=pct:2.2],Skin=[count:7=pct:2.2],Thyroid=[count:5=pct:2.8],Prostate=[count:4=pct:6.6],Lung=[count:4=pct:2.4],Heart=[count:3=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Blood=[count:2=pct:1.1],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},LOCAL_REARRANGEMENT:-:[3128],RP11-403B2.7->chr15:20935076-20961512:-,RP11-403B2.6->chr15:20964640-20980123:-	BICR18_UPPER_AERODIGESTIVE_TRACT	0.68	0.93	0.0894	TRUE	22	66	5	11	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	7	2	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22243	72	0	0.11	0.0481	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR18_UPPER_AERODIGESTIVE_TRACT	0	0.11	0.0619	FALSE	231	217	16	283	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MTAP--CDKN2B-AS1	7	2	MTAP	7556	chr9:21818201:+	CDKN2B-AS1	44409	chr9:22120503:+	ONLY_REF_SPLICE	YES	14	6	0.39	0.6	0.0481	0.0138	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	BICR18_UPPER_AERODIGESTIVE_TRACT	0.39	0.6	0.0619	FALSE	0	5	0	4	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	CPT1A--AP000439.1	7	0	CPT1A	2423	chr11:68609243:-	AP000439.1	33128	chr11:69242131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0481	0	CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-,AP000439.1->chr11:69240458-69244389:+	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.0481	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	11	1	0.39	0.0413	0.0069	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	BICR18_UPPER_AERODIGESTIVE_TRACT	0.39	1	0.0482	TRUE	458	1351	185	561	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	12	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	106	0	0.12	1	0.0206	0.0825	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.12	1	0.1031	FALSE	344	826	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	CTD-2008L17.1--RP11-456O19.2	5	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0344	0.0138	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.0482	FALSE	20	187	4	79	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19475	72	0	0.08	0.0344	0.0069	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR18_UPPER_AERODIGESTIVE_TRACT	0	0.08	0.0413	FALSE	231	205	14	283	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	1	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	15	0	0.29	1	0.0344	0.0069	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.29	1	0.0413	FALSE	344	821	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	2	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	23611	547	0	0.01	0.0275	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR18_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0413	FALSE	231	217	16	283	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	6	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0206	0.0413	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.0619	FALSE	344	821	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	POM121B--RPL37A	4	2	POM121B	7067	chr7:72714635:+	RPL37A	12604	chr2:217363587:+	INCL_NON_REF_SPLICE	YES	15	0	0.29	1	0.0275	0.0138	POM121B->POM121_transmembrane_nucleoporin_B_(pseudogene),chr7:72707497-72716496:+,RPL37A->chr2:217362912-217443903:+,ribosomal_protein_L37a	BICR18_UPPER_AERODIGESTIVE_TRACT	0.29	1	0.0413	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16962	117	0	0.04	0.0275	0.0069	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR18_UPPER_AERODIGESTIVE_TRACT	0	0.04	0.0344	FALSE	230	198	14	283	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	21	0	0.19	1	0.0275	0.0069	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.19	1	0.0344	FALSE	344	821	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	1	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	18	0	0.22	1	0.0275	0.0069	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.22	1	0.0344	FALSE	344	821	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	4	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	26	1803	0.16	0	0.0275	0.0069	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BICR18_UPPER_AERODIGESTIVE_TRACT	0	0.16	0.0344	FALSE	0	0	0	434	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	3	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	21525	1862	0	0	0.0206	0.0206	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR18_UPPER_AERODIGESTIVE_TRACT	0	0	0.0412	FALSE	231	217	16	283	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	2	6	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	NO	62	38	0.11	0.17	0.0138	0.0413	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	BICR18_UPPER_AERODIGESTIVE_TRACT	0.11	0.17	0.0551	TRUE	105	90	7	93	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	NO	23118	2	0	0.71	0.0206	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	BICR18_UPPER_AERODIGESTIVE_TRACT	0	0.71	0.0344	FALSE	231	217	16	283	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	AMDHD2--OR2L13	3	1	AMDHD2	1767	chr16:2571124:+	OR2L13	12014	chr1:248262660:+	ONLY_REF_SPLICE	YES	40	0	0.09	1	0.0206	0.0069	AMDHD2->amidohydrolase_domain_containing_2,chr16:2570358-2581423:+,OR2L13->chr1:248100493-248264224:+,olfactory_receptor_family_2_subfamily_L_member_13	BICR18_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	AMDHD2--OR2L13	3	1	AMDHD2	1767	chr16:2571124:+	OR2L13	11307	chr1:248261953:+	ONLY_REF_SPLICE	YES	40	0	0.09	1	0.0206	0.0069	AMDHD2->amidohydrolase_domain_containing_2,chr16:2570358-2581423:+,OR2L13->chr1:248100493-248264224:+,olfactory_receptor_family_2_subfamily_L_member_13	BICR18_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	BIN1--SLC4A10	3	1	BIN1	5470	chr2:127826500:-	SLC4A10	28186	chr2:162477425:+	ONLY_REF_SPLICE	YES	53	0	0.07	1	0.0206	0.0069	BIN1->Oncogene{Bushman},bridging_integrator_1,chr2:127805603-127864931:-,SLC4A10->chr2:162280843-162841792:+,solute_carrier_family_4_member_10	BICR18_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.0275	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	1	MT-ND4	1033	chrM:10792:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	13	0	0.24	1	0.0206	0.0069	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	BICR18_UPPER_AERODIGESTIVE_TRACT	0.24	1	0.0275	FALSE	344	821	44	306	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	3	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	26	1569	0.13	0	0.0206	0.0069	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BICR18_UPPER_AERODIGESTIVE_TRACT	0	0.13	0.0275	FALSE	0	0	0	434	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	3	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	YES	26	1726	0.13	0	0.0206	0.0069	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BICR18_UPPER_AERODIGESTIVE_TRACT	0	0.13	0.0275	FALSE	0	0	0	434	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	3	1	NPM1P24	1526	chr10:74677767:-	SET	12291	chr9:131456186:+	INCL_NON_REF_SPLICE	NO	26	1830	0.13	0	0.0206	0.0069	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BICR18_UPPER_AERODIGESTIVE_TRACT	0	0.13	0.0275	FALSE	0	0	0	434	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	VCL--ADK	1	9	VCL	1262	chr10:75758133:+	ADK	43773	chr10:76429941:+	ONLY_REF_SPLICE	YES	101	36	0.09	0.22	0.0069	0.0619	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[31042],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ADK->adenosine_kinase,chr10:75910960-76469061:+	BICR18_UPPER_AERODIGESTIVE_TRACT	0.09	0.22	0.0688	FALSE	0	2	0	3	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	RP11-152F13.7--HIATL1	2	2	RP11-152F13.7	1307	chr15:82945079:+	HIATL1	10523	chr9:97177440:+	ONLY_REF_SPLICE	YES	77	26	0.05	0.13	0.0138	0.0138	RP11-152F13.7->chr15:82944773-82974312:+,HIATL1->chr9:97136833-97223324:+	BICR18_UPPER_AERODIGESTIVE_TRACT	0.05	0.13	0.0276	TRUE	0	0	0	1	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	FBXL2--TOPAZ1	2	1	FBXL2	4577	chr3:33339217:+	TOPAZ1	35454	chr3:44308489:+	ONLY_REF_SPLICE	YES	10	0	0.23	1	0.0138	0.0069	FBXL2->F-box_and_leucine-rich_repeat_protein_2,chr3:33318517-33445154:+,TOPAZ1->chr3:44283378-44373590:+,testis_and_ovary_specific_PAZ_domain_containing_1	BICR18_UPPER_AERODIGESTIVE_TRACT	0.23	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	SWAP70--C11orf49	2	1	SWAP70	2343	chr11:9715833:+	C11orf49	43963	chr11:47182678:+	ONLY_REF_SPLICE	YES	34	17	0.08	0.15	0.0138	0.0069	SWAP70->Oncogene{Bushman},SWAP_switching_B-cell_complex_70kDa_subunit,chr11:9685624-9774538:+,C11orf49->chr11:46958240-47185936:+,chromosome_11_open_reading_frame_49	BICR18_UPPER_AERODIGESTIVE_TRACT	0.08	0.15	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	FBXL2--TOPAZ1	1	4	FBXL2	10864	chr3:33406211:+	TOPAZ1	34389	chr3:44303911:+	ONLY_REF_SPLICE	NO	11	0	0.31	1	0.0069	0.0275	FBXL2->F-box_and_leucine-rich_repeat_protein_2,chr3:33318517-33445154:+,TOPAZ1->chr3:44283378-44373590:+,testis_and_ovary_specific_PAZ_domain_containing_1	BICR18_UPPER_AERODIGESTIVE_TRACT	0.31	1	0.0344	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	KCNQ5--VMP1	2	0	KCNQ5	1796	chr6:73332315:+	VMP1	38106	chr17:57886157:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0138	0	KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.0138	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	PPFIA1--ORAOV1	2	0	PPFIA1	2737	chr11:70118542:+	ORAOV1	49915	chr11:69482780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0138	0	PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+,ORAOV1->Oncogene{Bushman},chr11:69467844-69490184:-,oral_cancer_overexpressed_1	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.0138	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	RP1-34H18.1--NAV3	2	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0138	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.0138	TRUE	254	575	65	124	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	C7orf60--IMMP2L-IT1	1	2	C7orf60	5088	chr7:112535624:-	IMMP2L-IT1	14555	chr7:110364647:-	ONLY_REF_SPLICE	YES	33	0	0.08	1	0.0069	0.0138	C7orf60->chr7:112459202-112579971:-,IMMP2L-IT1->chr7:110364215-110365881:-	BICR18_UPPER_AERODIGESTIVE_TRACT	0.08	1	0.0207	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	18	1	0.14	0.0069	0.0138	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	BICR18_UPPER_AERODIGESTIVE_TRACT	0.14	1	0.0207	FALSE	16	356	14	466	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	RP11-152F13.7--HIATL1	1	2	RP11-152F13.7	1257	chr15:82945029:+	HIATL1	10523	chr9:97177440:+	ONLY_REF_SPLICE	YES	84	26	0.03	0.1	0.0069	0.0138	RP11-152F13.7->chr15:82944773-82974312:+,HIATL1->chr9:97136833-97223324:+	BICR18_UPPER_AERODIGESTIVE_TRACT	0.03	0.1	0.0207	TRUE	0	0	0	1	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	TLK1--WDR34	1	2	TLK1	2781	chr2:172016800:-	WDR34	39113	chr9:131403218:-	ONLY_REF_SPLICE	NO	59	685	0.05	0	0.0069	0.0138	TLK1->chr2:171847333-172087824:-,tousled_like_kinase_1,WDR34->WD_repeat_domain_34,chr9:131395940-131419066:-	BICR18_UPPER_AERODIGESTIVE_TRACT	0	0.05	0.0207	FALSE	0	0	0	1	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	VCL--ADK	1	2	VCL	2333	chr10:75802911:+	ADK	44860	chr10:76468079:+	ONLY_REF_SPLICE	YES	96	34	0.03	0.08	0.0069	0.0138	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[31042],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ADK->adenosine_kinase,chr10:75910960-76469061:+	BICR18_UPPER_AERODIGESTIVE_TRACT	0.03	0.08	0.0207	FALSE	0	1	0	2	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	CTD-2008L17.1--RP11-456O19.2	1	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0069	0.0069	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	BICR18_UPPER_AERODIGESTIVE_TRACT	1	1	0.0138	FALSE	33	240	4	98	0	FALSE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	DFFB--CEP104	1	1	DFFB	1437	chr1:3774281:+	CEP104	16907	chr1:3768985:-	ONLY_REF_SPLICE	NO	16	1	0.11	0.67	0.0069	0.0069	LOCAL_INVERSION:+:-:[67],DFFB->DNA_fragmentation_factor_subunit_beta,chr1:3773845-3801993:+,CEP104->centrosomal_protein_104,chr1:3728645-3773778:-	BICR18_UPPER_AERODIGESTIVE_TRACT	0.11	0.67	0.0138	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	FBXL2--TOPAZ1	1	1	FBXL2	4814	chr3:33339454:+	TOPAZ1	35454	chr3:44308489:+	ONLY_REF_SPLICE	YES	12	0	0.14	1	0.0069	0.0069	FBXL2->F-box_and_leucine-rich_repeat_protein_2,chr3:33318517-33445154:+,TOPAZ1->chr3:44283378-44373590:+,testis_and_ovary_specific_PAZ_domain_containing_1	BICR18_UPPER_AERODIGESTIVE_TRACT	0.14	1	0.0138	TRUE	0	0	0	1	0	TRUE	ACH-000992
BICR18_UPPER_AERODIGESTIVE_TRACT	HSPD1--GLRX3	1	1	HSPD1	6429	chr2:198360018:-	GLRX3	19669	chr10:131959060:+	ONLY_REF_SPLICE	NO	1082	853	0	0	0.0069	0.0069	HSPD1->Oncogene{Bushman},chr2:198351305-198381461:-,heat_shock_protein_family_D_(Hsp60)_member_1,GLRX3->chr10:131934663-131982785:+,glutaredoxin_3	BICR18_UPPER_AERODIGESTIVE_TRACT	0	0	0.0138	FALSE	0	0	0	1	0	FALSE	ACH-000992
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	6419	3121	NBAS	5992	chr2:15691617:-	FAM49A	68667	chr2:16747035:-	ONLY_REF_SPLICE	YES	27	2	1	1	67.2001	32.6735	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	1	1	99.8736	TRUE	0	0	0	5	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	5	2329	NBAS	4948	chr2:15693550:-	FAM49A	68667	chr2:16747035:-	ONLY_REF_SPLICE	YES	37	2	0.98	1	0.0523	24.3822	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0.98	1	24.4345	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	59	947	NBAS	5992	chr2:15691617:-	FAM49A	69789	chr2:16745362:-	ONLY_REF_SPLICE	YES	27	769	0.97	0.57	0.6177	9.9141	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0.57	0.97	10.5318	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	2	919	NBAS	3235	chr2:15696907:-	FAM49A	68667	chr2:16747035:-	ONLY_REF_SPLICE	YES	1654	2	0.36	1	0.0209	9.621	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0.36	1	9.6419	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	102	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0678	0.3455	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NH6_AUTONOMIC_GANGLIA	1	1	1.4133	TRUE	508	994	45	981	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	5	376	NBAS	1143	chr2:15701312:-	FAM49A	68667	chr2:16747035:-	ONLY_REF_SPLICE	YES	1566	2	0.2	0.99	0.0523	3.9363	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0.2	0.99	3.9886	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	64	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	128	7	0.34	0.91	0.67	0.0314	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NH6_AUTONOMIC_GANGLIA	0.34	0.91	0.7014	TRUE	519	3926	326	965	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	42	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.4397	0.0105	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NH6_AUTONOMIC_GANGLIA	0.98	1	0.4502	FALSE	499	1288	110	792	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	37	14	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	1	22	0.98	0.7	0.3874	0.1466	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NH6_AUTONOMIC_GANGLIA	0.7	0.98	0.534	TRUE	458	1351	185	561	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	4	119	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	4	0	0.97	1	0.0419	1.2458	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NH6_AUTONOMIC_GANGLIA	0.97	1	1.2877	FALSE	344	826	44	306	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	8	102	NBAS	5992	chr2:15691617:-	FAM49A	71503	chr2:16742801:-	ONLY_REF_SPLICE	YES	27	2762	0.8	0.04	0.0838	1.0678	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0.04	0.8	1.1516	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	118	MT-ND4	1170	chrM:10929:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	YES	3	0	0.98	1	0.0314	1.2353	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NH6_AUTONOMIC_GANGLIA	0.98	1	1.2667	FALSE	344	826	44	306	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	1	98	NBAS	1143	chr2:15701312:-	FAM49A	69789	chr2:16745362:-	ONLY_REF_SPLICE	YES	1566	769	0.06	0.11	0.0105	1.026	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0.06	0.11	1.0365	TRUE	0	0	0	1	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	22	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.2303	0.1256	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NH6_AUTONOMIC_GANGLIA	0.89	1	0.3559	FALSE	499	1288	110	792	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	4	83	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0419	0.8689	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NH6_AUTONOMIC_GANGLIA	0.98	1	0.9108	FALSE	344	821	44	306	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	24	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2513	0.0105	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NH6_AUTONOMIC_GANGLIA	0.96	1	0.2618	FALSE	499	1288	110	792	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	OR51S1--TP53I11	21	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2198	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NH6_AUTONOMIC_GANGLIA	1	1	0.2198	TRUE	402	216	10	229	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-TA--MT-TC	19	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1989	0.0209	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NH6_AUTONOMIC_GANGLIA	1	1	0.2198	FALSE	462	80	0	856	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	1	74	NBAS	4948	chr2:15693550:-	FAM49A	71503	chr2:16742801:-	ONLY_REF_SPLICE	YES	37	2762	0.67	0.03	0.0105	0.7747	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0.03	0.67	0.7852	TRUE	0	0	0	1	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	13	25	MT-CO3	1138	chrM:9344:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	5	5	0.88	0.88	0.1361	0.2617	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NH6_AUTONOMIC_GANGLIA	0.88	0.88	0.3978	FALSE	189	492	56	216	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	17	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	1	108	0.96	0.19	0.178	0.0838	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NH6_AUTONOMIC_GANGLIA	0.19	0.96	0.2618	TRUE	465	1949	224	605	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	60	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	5	0	0.93	1	0.0314	0.6281	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NH6_AUTONOMIC_GANGLIA	0.93	1	0.6595	FALSE	344	826	44	306	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NPM1P24--SET	18	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1884	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NH6_AUTONOMIC_GANGLIA	1	1	0.1884	TRUE	0	0	0	434	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	RP11-123O10.4--GRIP1	15	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.157	0.0105	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NH6_AUTONOMIC_GANGLIA	1	1	0.1675	FALSE	416	2512	207	587	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	5	31	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	7112	0	0.01	1	0.0523	0.3245	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NH6_AUTONOMIC_GANGLIA	0.01	1	0.3768	FALSE	328	800	43	304	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	12	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.82	1	0.1256	0.0209	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NH6_AUTONOMIC_GANGLIA	0.82	1	0.1465	FALSE	292	1546	117	613	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	4	29	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	1	1	0.97	0.97	0.0419	0.3036	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NH6_AUTONOMIC_GANGLIA	0.97	0.97	0.3455	FALSE	344	821	44	306	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	8	13	NBAS	1143	chr2:15701312:-	FAM49A	71503	chr2:16742801:-	ONLY_REF_SPLICE	YES	1566	2762	0.01	0.01	0.0838	0.1361	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0.01	0.01	0.2199	TRUE	0	0	0	1	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	32	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0314	0.335	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NH6_AUTONOMIC_GANGLIA	0.95	1	0.3664	FALSE	344	821	44	306	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	7	15	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.85	1	0.0733	0.157	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NH6_AUTONOMIC_GANGLIA	0.85	1	0.2303	FALSE	499	1288	110	792	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MAPT-AS1--ACOT11	8	9	MAPT-AS1	1121	chr17:43972846:-	ACOT11	9678	chr1:55050328:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0838	0.0942	MAPT-AS1->MAPT_antisense_RNA_1,chr17:43921017-43972966:-,ACOT11->acyl-CoA_thioesterase_11,chr1:55007930-55104865:+	NH6_AUTONOMIC_GANGLIA	0.94	1	0.178	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	4	21	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.0419	0.2198	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NH6_AUTONOMIC_GANGLIA	0.86	1	0.2617	FALSE	344	826	44	306	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	4	21	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	5	0	0.83	1	0.0419	0.2198	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NH6_AUTONOMIC_GANGLIA	0.83	1	0.2617	FALSE	344	826	44	306	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	8	5	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	24	0	0.35	1	0.0838	0.0523	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NH6_AUTONOMIC_GANGLIA	0.35	1	0.1361	FALSE	125	705	46	456	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	FGF14-IT1--FGF14	9	0	FGF14-IT1	3717	chr13:103018795:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0942	0	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	NH6_AUTONOMIC_GANGLIA	1	1	0.0942	TRUE	80	58	2	10	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	5	15	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	4	0	0.83	1	0.0523	0.157	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NH6_AUTONOMIC_GANGLIA	0.83	1	0.2093	FALSE	344	826	44	306	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	7	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	6	0	0.57	1	0.0733	0.0105	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NH6_AUTONOMIC_GANGLIA	0.57	1	0.0838	FALSE	189	492	56	216	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	5	9	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	4	0	0.78	1	0.0523	0.0942	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NH6_AUTONOMIC_GANGLIA	0.78	1	0.1465	FALSE	344	826	44	306	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NPM1P24--SET	7	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0733	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NH6_AUTONOMIC_GANGLIA	1	1	0.0733	TRUE	0	0	0	434	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	3	15	MT-CO3	1039	chrM:9245:+	MT-ATP6	5321	chrM:9063:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.78	0.0314	0.157	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NH6_AUTONOMIC_GANGLIA	0.78	1	0.1884	FALSE	189	492	56	216	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	15	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.0314	0.157	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NH6_AUTONOMIC_GANGLIA	0.86	1	0.1884	FALSE	499	1288	110	792	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	5	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0523	0.0628	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NH6_AUTONOMIC_GANGLIA	0.85	1	0.1151	FALSE	499	1288	110	792	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-TA--MT-TC	6	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0628	0.0209	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NH6_AUTONOMIC_GANGLIA	1	1	0.0837	FALSE	462	80	0	856	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	4	9	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	13	0	0.5	1	0.0419	0.0942	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NH6_AUTONOMIC_GANGLIA	0.5	1	0.1361	FALSE	344	827	44	306	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	5	1	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	5	0	0.55	1	0.0523	0.0105	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NH6_AUTONOMIC_GANGLIA	0.55	1	0.0628	FALSE	189	492	56	216	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	5	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0523	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NH6_AUTONOMIC_GANGLIA	1	1	0.0523	FALSE	189	492	56	216	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	3	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	27	0	0.27	1	0.0314	0.0733	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NH6_AUTONOMIC_GANGLIA	0.27	1	0.1047	FALSE	164	806	69	479	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NDUFA4--PHF14	4	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	468	48	0.01	0.09	0.0419	0.0105	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NH6_AUTONOMIC_GANGLIA	0.01	0.09	0.0524	FALSE	19	32	3	60	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	4	0	MT-CO3	1012	chrM:9218:+	MT-ATP6	5425	chrM:9167:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NH6_AUTONOMIC_GANGLIA	1	1	0.0419	FALSE	189	492	56	216	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	4	0	MT-ND4	1041	chrM:10800:+	MT-ND4L	5647	chrM:10738:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NH6_AUTONOMIC_GANGLIA	1	1	0.0419	FALSE	344	821	44	306	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0419	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NH6_AUTONOMIC_GANGLIA	1	1	0.0419	FALSE	499	1288	110	792	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MAF--RP11-679B19.2	3	3	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0.0314	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	NH6_AUTONOMIC_GANGLIA	1	1	0.0628	TRUE	48	25	3	38	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	3	3	NBAS	5992	chr2:15691617:-	FAM49A	74507	chr2:16736407:-	ONLY_REF_SPLICE	YES	27	3169	0.18	0	0.0314	0.0314	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0	0.18	0.0628	FALSE	0	0	0	1	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND4--MT-ND4L	3	2	MT-ND4	1004	chrM:10763:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0314	0.0209	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NH6_AUTONOMIC_GANGLIA	0.83	1	0.0523	FALSE	344	821	44	306	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-TA--MT-TC	3	2	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0314	0.0209	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NH6_AUTONOMIC_GANGLIA	1	1	0.0523	FALSE	462	80	0	856	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	CPSF6--C9orf3	3	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	109	74	0.04	0.05	0.0314	0.0105	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	NH6_AUTONOMIC_GANGLIA	0.04	0.05	0.0419	TRUE	53	99	2	44	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	3	1	NBAS	5992	chr2:15691617:-	FAM49A	75578	chr2:16734267:-	ONLY_REF_SPLICE	YES	27	2806	0.13	0	0.0314	0.0105	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0	0.13	0.0419	FALSE	0	0	0	1	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	3	1	NBAS	1143	chr2:15701312:-	FAM49A	75578	chr2:16734267:-	ONLY_REF_SPLICE	YES	1566	2806	0	0	0.0314	0.0105	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0	0	0.0419	FALSE	0	0	0	1	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	3	1	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0314	0.0105	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NH6_AUTONOMIC_GANGLIA	0.67	1	0.0419	FALSE	21	45	1	60	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	PRR16--CTD-2334D19.1	3	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	14	0	0.22	1	0.0314	0.0105	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NH6_AUTONOMIC_GANGLIA	0.22	1	0.0419	FALSE	56	216	12	147	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	CTD-2251F13.1--PRKD1	3	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NH6_AUTONOMIC_GANGLIA	1	1	0.0314	TRUE	0	3	0	9	3	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-CO3--MT-ATP6	3	0	MT-CO3	1063	chrM:9269:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NH6_AUTONOMIC_GANGLIA	1	1	0.0314	FALSE	189	492	56	216	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NH6_AUTONOMIC_GANGLIA	1	1	0.0314	FALSE	499	1288	110	792	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	KANSL1--MAPT-AS1	2	3	KANSL1	7536	chr17:44248221:-	MAPT-AS1	34397	chr17:43921527:-	ONLY_REF_SPLICE	YES	80	0	0.06	1	0.0209	0.0314	KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,MAPT-AS1->MAPT_antisense_RNA_1,chr17:43921017-43972966:-	NH6_AUTONOMIC_GANGLIA	0.06	1	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	19	1	0.17	0.0209	0.0209	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NH6_AUTONOMIC_GANGLIA	0.17	1	0.0418	FALSE	16	356	14	466	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	VTI1A--RP11-57H14.3	2	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	38	0	0.1	1	0.0209	0.0209	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NH6_AUTONOMIC_GANGLIA	0.1	1	0.0418	FALSE	272	151	14	158	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	2	1	NBAS	4313	chr2:15694185:-	FAM49A	75578	chr2:16734267:-	ONLY_REF_SPLICE	YES	166	2806	0.02	0	0.0209	0.0105	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0	0.02	0.0314	FALSE	0	0	0	1	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	CPSF6--AHI1	2	0	CPSF6	11046	chr12:69656342:+	AHI1	32260	chr6:135774574:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,AHI1->Abelson_helper_integration_site_1,Oncogene{Bushman},chr6:135604670-135818914:-	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	1	0	7	1	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	CTD-2281E23.2--DLGAP2	2	0	CTD-2281E23.2	3418	chr8:1208883:+	DLGAP2	8510	chr8:1449532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	GTEx_FI:{Testis=[count:34=pct:32.4],Brain=[count:24=pct:3.6],Pituitary=[count:4=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Thyroid=[count:2=pct:1.1]},CTD-2281E23.2->chr8:1054882-1212580:+,DLGAP2->chr8:1449532-1656642:+,discs_large_homolog_associated_protein_2	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	49	61	1	13	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	EGF--BBX	2	0	EGF	21671	chr4:110909865:+	BBX	49689	chr3:107429299:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	EGF->Oncogene{Bushman},chr4:110834040-110933422:+,epidermal_growth_factor,BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	FXYD6--GTF2IRD1	2	0	FXYD6	9689	chr11:117710496:-	GTF2IRD1	26071	chr7:73938401:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	FXYD6->FXYD_domain_containing_ion_transport_regulator_6,chr11:117707693-117748201:-,GTF2IRD1->GTF2I_repeat_domain_containing_1,chr7:73868120-74016931:+	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	IPO11--MAP3K1	2	0	IPO11	9994	chr5:61747760:+	MAP3K1	46205	chr5:56152427:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	IPO11->chr5:61699799-61924409:+,importin_11,MAP3K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr5:56111401-56191979:+,mitogen-activated_protein_kinase_kinase_kinase_1	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	IPO9--WDR11	2	0	IPO9	9351	chr1:201824051:+	WDR11	66905	chr10:122668068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	IPO9->chr1:201798269-201853422:+,importin_9,WDR11->Oncogene{Bushman},WD_repeat_domain_11,chr10:122610687-122669036:+	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MIR181A2HG--MAP7D1	2	0	MIR181A2HG	1275	chr9:127421020:+	MAP7D1	8375	chr1:36636572:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	MIR181A2HG->MIR181A2_host_gene,chr9:127420746-127460910:+,MAP7D1->MAP7_domain_containing_1,chr1:36621180-36646450:+	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	FALSE	46	201	11	112	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	U2AF1--TUBGCP6	2	0	U2AF1	1137	chr21:44527561:-	TUBGCP6	30839	chr22:50658444:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-,TUBGCP6->chr22:50656118-50683421:-,tubulin_gamma_complex_associated_protein_6	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	WRN--FBXO38	2	0	WRN	1173	chr8:30891489:+	FBXO38	61129	chr5:147812987:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0209	0	WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+,FBXO38->F-box_protein_38,chr5:147763498-147822399:+	NH6_AUTONOMIC_GANGLIA	1	1	0.0209	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	NO	0	13	1	0.19	0.0105	0.0209	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NH6_AUTONOMIC_GANGLIA	0.19	1	0.0314	FALSE	0	23	1	67	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	BSG--ANKRD11	1	1	BSG	2405	chr19:572701:+	ANKRD11	32039	chr16:89357591:-	ONLY_REF_SPLICE	NO	360	111	0.01	0.02	0.0105	0.0105	BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-	NH6_AUTONOMIC_GANGLIA	0.01	0.02	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	LINC00693--RBMS3	1	1	LINC00693	2706	chr3:28617987:+	RBMS3	11220	chr3:29476234:+	ONLY_REF_SPLICE	YES	8	116	0.2	0.02	0.0105	0.0105	LINC00693->chr3:28616282-28799831:+,long_intergenic_non-protein_coding_RNA_693,RBMS3->RNA_binding_motif_single_stranded_interacting_protein_3,chr3:29322473-30051886:+	NH6_AUTONOMIC_GANGLIA	0.02	0.2	0.021	TRUE	1	0	0	2	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	MKL1--SLC25A17	1	1	MKL1	1225	chr22:41032482:-	SLC25A17	37199	chr22:41166985:-	ONLY_REF_SPLICE	NO	57	68	0.03	0.03	0.0105	0.0105	MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,SLC25A17->chr22:41165634-41215403:-,solute_carrier_family_25_member_17	NH6_AUTONOMIC_GANGLIA	0.03	0.03	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	1	1	NBAS	4948	chr2:15693550:-	FAM49A	75578	chr2:16734267:-	ONLY_REF_SPLICE	YES	37	2806	0.05	0	0.0105	0.0105	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0	0.05	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NBAS--FAM49A	1	1	NBAS	1143	chr2:15701312:-	FAM49A	74507	chr2:16736407:-	ONLY_REF_SPLICE	YES	1566	3169	0	0	0.0105	0.0105	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NH6_AUTONOMIC_GANGLIA	0	0	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000203
NH6_AUTONOMIC_GANGLIA	NCR3LG1--SERGEF	1	1	NCR3LG1	4004	chr11:17388894:+	SERGEF	17372	chr11:18029623:-	ONLY_REF_SPLICE	YES	31	12	0.06	0.14	0.0105	0.0105	NCR3LG1->chr11:17373273-17398888:+,natural_killer_cell_cytotoxicity_receptor_3_ligand_1,SERGEF->chr11:17809595-18034709:-,secretion_regulating_guanine_nucleotide_exchange_factor	NH6_AUTONOMIC_GANGLIA	0.06	0.14	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	SLAIN1--SCEL	1	1	SLAIN1	9045	chr13:78320990:+	SCEL	37895	chr13:78187026:+	ONLY_REF_SPLICE	NO	28	0	0.07	1	0.0105	0.0105	LOCAL_REARRANGEMENT:+:[52625],SLAIN1->SLAIN_motif_family_member_1,chr13:78272023-78338377:+,SCEL->chr13:78109809-78219398:+,sciellin	NH6_AUTONOMIC_GANGLIA	0.07	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000203
NH6_AUTONOMIC_GANGLIA	ZNF738--CHMP1A	1	1	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	49	171	0.04	0.01	0.0105	0.0105	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NH6_AUTONOMIC_GANGLIA	0.01	0.04	0.021	FALSE	1	20	1	28	3	FALSE	ACH-000203
HEC151_ENDOMETRIUM	TIMM23B--PARGP1	148	25	TIMM23B	6950	chr10:51387763:+	PARGP1	24510	chr10:51732772:+	ONLY_REF_SPLICE	YES	0	0	1	1	1.6248	0.2745	GTEx_FI:{Brain=[count:141=pct:21.4],Esophagus=[count:79=pct:19.5],Skin=[count:66=pct:21.0],Heart=[count:57=pct:22.7],Blood_Vessel=[count:54=pct:14.6],Adipose_Tissue=[count:48=pct:16.1],Colon=[count:35=pct:18.3],Thyroid=[count:33=pct:18.6],Liver=[count:32=pct:26.4],Pancreas=[count:28=pct:15.5],Muscle=[count:27=pct:11.5],Adrenal_Gland=[count:27=pct:31.8],Lung=[count:25=pct:15.0],Spleen=[count:24=pct:21.4],Stomach=[count:22=pct:24.7],Vagina=[count:21=pct:38.2],Blood=[count:20=pct:11.5],Nerve=[count:20=pct:11.8],Whole_Blood=[count:19=pct:14.4],Testis=[count:17=pct:16.2],Breast=[count:15=pct:13.5],Small_Intestine=[count:12=pct:21.8],Prostate=[count:11=pct:18.0],Salivary_Gland=[count:11=pct:28.2],Uterus=[count:10=pct:23.3],Ovary=[count:10=pct:18.9],Kidney=[count:2=pct:14.3],Cervix_Uteri=[count:2=pct:25.0],Pituitary=[count:1=pct:1.9],Bladder=[count:1=pct:11.1],Fallopian_Tube=[count:1=pct:16.7]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,PARGP1->chr10:51623417-51732824:+,poly(ADP-ribose)_glycohydrolase_pseudogene_1	HEC151_ENDOMETRIUM	1	1	1.8993	TRUE	393	2105	140	19	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	TIMM23--RP11-464F9.1	86	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	310	4	0.22	0.96	0.9442	0.022	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HEC151_ENDOMETRIUM	0.22	0.96	0.9662	TRUE	519	3926	326	965	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-TA--MT-TN	61	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6697	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC151_ENDOMETRIUM	1	1	0.6697	FALSE	369	2501	205	193	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-ND6--MT-TE	52	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.5709	0.0329	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC151_ENDOMETRIUM	0.96	1	0.6038	FALSE	499	1288	110	792	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	ZNF654--HMGB2	42	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4611	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HEC151_ENDOMETRIUM	1	1	0.4611	TRUE	0	0	0	518	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-TA--MT-TC	40	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4391	0.022	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC151_ENDOMETRIUM	1	1	0.4611	FALSE	462	80	0	856	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	TMEM178B--MRPS33	35	12	TMEM178B	1461	chr7:140774492:+	MRPS33	21482	chr7:140706335:-	ONLY_REF_SPLICE	YES	38	179	0.55	0.21	0.3843	0.1317	LOCAL_INVERSION:+:-:[59004],TMEM178B->chr7:140774032-141180180:+,transmembrane_protein_178B,MRPS33->chr7:140705854-140715028:-,mitochondrial_ribosomal_protein_S33	HEC151_ENDOMETRIUM	0.21	0.55	0.516	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	TMEM178B--MRPS33	29	30	TMEM178B	1461	chr7:140774492:+	MRPS33	19496	chr7:140710460:-	ONLY_REF_SPLICE	YES	38	29	0.61	0.67	0.3184	0.3294	LOCAL_INVERSION:+:-:[59004],TMEM178B->chr7:140774032-141180180:+,transmembrane_protein_178B,MRPS33->chr7:140705854-140715028:-,mitochondrial_ribosomal_protein_S33	HEC151_ENDOMETRIUM	0.61	0.67	0.6478	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	MT-ND6--MT-TE	29	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.91	1	0.3184	0.1427	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC151_ENDOMETRIUM	0.91	1	0.4611	FALSE	499	1288	110	792	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-ND6--MT-TE	27	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.2964	0.0549	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC151_ENDOMETRIUM	0.94	1	0.3513	FALSE	499	1288	110	792	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-TA--MT-TN	10	51	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1098	0.5599	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC151_ENDOMETRIUM	1	1	0.6697	FALSE	369	2501	205	193	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-TA--MT-TN	6	60	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0.6587	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC151_ENDOMETRIUM	1	1	0.7246	FALSE	369	2501	205	193	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-TA--MT-TN	16	16	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1757	0.1757	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC151_ENDOMETRIUM	1	1	0.3514	FALSE	369	2501	205	193	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-TA--MT-TN	9	39	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0988	0.4282	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC151_ENDOMETRIUM	1	1	0.527	FALSE	369	2501	205	193	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-ND6--MT-TE	12	21	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.1317	0.2306	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC151_ENDOMETRIUM	0.94	1	0.3623	FALSE	499	1288	110	792	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-TA--MT-TN	10	25	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1098	0.2745	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC151_ENDOMETRIUM	1	1	0.3843	FALSE	369	2501	205	193	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--hsa-mir-6723	15	1	MTATP6P1	1117	chr1:569192:+	hsa-mir-6723	5321	chr1:567093:+	INCL_NON_REF_SPLICE	YES	1429	1279	0.01	0.01	0.1647	0.011	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0.01	0.01	0.1757	TRUE	2	7	0	3	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-TA--MT-TN	15	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1647	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC151_ENDOMETRIUM	1	1	0.1647	FALSE	369	2501	205	193	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	NPM1P24--SET	15	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1647	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HEC151_ENDOMETRIUM	1	1	0.1647	TRUE	0	0	0	434	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	SLC12A4--DPEP2	13	5	SLC12A4	9427	chr16:67988546:-	DPEP2	31131	chr16:68021663:-	ONLY_REF_SPLICE	YES	45	2	0.29	0.9	0.1427	0.0549	LOCAL_REARRANGEMENT:-:[17793],SLC12A4->chr16:67977377-68003504:-,solute_carrier_family_12_member_4,DPEP2->chr16:68021297-68034489:-,dipeptidase_2	HEC151_ENDOMETRIUM	0.29	0.9	0.1976	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	MT-TA--MT-TN	14	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1537	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC151_ENDOMETRIUM	1	1	0.1537	FALSE	369	2501	205	193	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	TMEM178B--MRPS33	7	21	TMEM178B	1461	chr7:140774492:+	MRPS33	19539	chr7:140710417:-	ONLY_REF_SPLICE	YES	38	28	0.42	0.5	0.0769	0.2306	LOCAL_INVERSION:+:-:[59004],TMEM178B->chr7:140774032-141180180:+,transmembrane_protein_178B,MRPS33->chr7:140705854-140715028:-,mitochondrial_ribosomal_protein_S33	HEC151_ENDOMETRIUM	0.42	0.5	0.3075	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	HSPBP1--GRK5	12	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1317	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HEC151_ENDOMETRIUM	1	1	0.1317	TRUE	1	39	0	134	39	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--hsa-mir-6723	11	1	MTATP6P1	1123	chr1:569198:+	hsa-mir-6723	5324	chr1:567096:+	INCL_NON_REF_SPLICE	YES	1625	1275	0.01	0.01	0.1208	0.011	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0.01	0.01	0.1318	TRUE	2	7	0	3	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--MTND2P28	11	0	MTATP6P1	1098	chr1:569173:+	MTND2P28	5521	chr1:565859:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1208	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HEC151_ENDOMETRIUM	1	1	0.1208	TRUE	20	3	0	12	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--hsa-mir-6723	10	4	MTATP6P1	1526	chr1:569601:+	hsa-mir-6723	5887	chr1:567659:+	INCL_NON_REF_SPLICE	NO	1473	2702	0.01	0.01	0.1098	0.0439	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0.01	0.01	0.1537	FALSE	2	7	0	3	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	C15orf57--CBX3	9	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	84	81	0.14	0.15	0.0988	0.0549	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEC151_ENDOMETRIUM	0.14	0.15	0.1537	TRUE	267	562	48	632	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-ND6--MT-TE	5	21	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.87	1	0.0549	0.2306	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC151_ENDOMETRIUM	0.87	1	0.2855	FALSE	499	1288	110	792	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	SPP1--MTATP6P1	10	0	SPP1	6793	chr4:88903711:+	MTATP6P1	10956	chr1:569387:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1098	0	SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	HEC151_ENDOMETRIUM	1	1	0.1098	TRUE	0	0	0	3	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	ATP5B--PTGES3	9	3	ATP5B	4557	chr12:57036242:-	PTGES3	16109	chr12:57060050:-	ONLY_REF_SPLICE	YES	1851	1009	0.01	0.01	0.0988	0.0329	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:-:[17329],ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-,PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3	HEC151_ENDOMETRIUM	0.01	0.01	0.1317	TRUE	0	0	0	1	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--hsa-mir-6723	9	2	MTATP6P1	1128	chr1:569203:+	hsa-mir-6723	5329	chr1:567101:+	INCL_NON_REF_SPLICE	YES	1926	1271	0.01	0.01	0.0988	0.022	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0.01	0.01	0.1208	TRUE	2	7	0	3	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--hsa-mir-6723	6	14	MTATP6P1	1555	chr1:569630:+	hsa-mir-6723	5199	chr1:566971:+	INCL_NON_REF_SPLICE	YES	1119	1376	0.02	0.01	0.0659	0.1537	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0.01	0.02	0.2196	TRUE	2	7	0	3	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-ND6--MT-TE	4	21	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.0439	0.2306	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC151_ENDOMETRIUM	0.86	1	0.2745	FALSE	499	1288	110	792	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	SLC1A5--MT-ND4L	9	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0988	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC151_ENDOMETRIUM	1	1	0.0988	FALSE	0	0	0	189	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	ZNF654--HMGB2	9	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0988	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HEC151_ENDOMETRIUM	1	1	0.0988	TRUE	0	0	0	518	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	LMNB2--AC005624.2	8	3	LMNB2	1327	chr19:2456668:-	AC005624.2	17630	chr19:2459098:-	ONLY_REF_SPLICE	YES	111	1	0.09	0.92	0.0878	0.0329	LOCAL_REARRANGEMENT:-:[1939],LMNB2->chr19:2427636-2456994:-,lamin_B2,AC005624.2->chr19:2458933-2462183:-	HEC151_ENDOMETRIUM	0.09	0.92	0.1207	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--hsa-mir-6723	6	10	MTATP6P1	1158	chr1:569233:+	hsa-mir-6723	4739	chr1:566511:+	INCL_NON_REF_SPLICE	YES	3197	0	0	1	0.0659	0.1098	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0	1	0.1757	TRUE	1	3	0	3	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-ND6--MT-TE	8	1	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0878	0.011	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC151_ENDOMETRIUM	1	1	0.0988	FALSE	499	1288	110	792	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--hsa-mir-6723	8	1	MTATP6P1	1074	chr1:569149:+	hsa-mir-6723	5870	chr1:567642:+	INCL_NON_REF_SPLICE	YES	130	2338	0.06	0	0.0878	0.011	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0	0.06	0.0988	FALSE	2	7	0	3	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-ND6--MT-TE	3	20	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0329	0.2196	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC151_ENDOMETRIUM	0.92	1	0.2525	FALSE	499	1288	110	792	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTND4P12--hsa-mir-6723	7	3	MTND4P12	1975	chr5:134262752:-	hsa-mir-6723	6077	chr1:567153:+	INCL_NON_REF_SPLICE	YES	8	1045	0.56	0.01	0.0769	0.0329	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0.01	0.56	0.1098	TRUE	0	0	0	1	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	SLC12A4--DPEP2	6	7	SLC12A4	9427	chr16:67988546:-	DPEP2	30904	chr16:68021890:-	ONLY_REF_SPLICE	YES	45	0	0.22	1	0.0659	0.0769	LOCAL_REARRANGEMENT:-:[17793],SLC12A4->chr16:67977377-68003504:-,solute_carrier_family_12_member_4,DPEP2->chr16:68021297-68034489:-,dipeptidase_2	HEC151_ENDOMETRIUM	0.22	1	0.1428	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--hsa-mir-6723	7	1	MTATP6P1	1121	chr1:569196:+	hsa-mir-6723	4698	chr1:566470:+	INCL_NON_REF_SPLICE	YES	1555	0	0.01	1	0.0769	0.011	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0.01	1	0.0879	FALSE	1	3	0	3	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0769	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC151_ENDOMETRIUM	1	1	0.0769	FALSE	499	1288	110	792	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--hsa-mir-6723	5	8	MTATP6P1	1158	chr1:569233:+	hsa-mir-6723	5324	chr1:567096:+	INCL_NON_REF_SPLICE	YES	3197	1275	0	0.01	0.0549	0.0878	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0	0.01	0.1427	TRUE	2	7	0	3	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--MTND2P28	5	6	MTATP6P1	1133	chr1:569208:+	MTND2P28	4695	chr1:565033:+	INCL_NON_REF_SPLICE	YES	2200	0	0	1	0.0549	0.0659	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HEC151_ENDOMETRIUM	0	1	0.1208	TRUE	20	3	0	12	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	SF3B14--DTNB	5	6	SF3B14	2363	chr2:24296946:-	DTNB	24995	chr2:25705742:-	ONLY_REF_SPLICE	YES	509	23	0.02	0.32	0.0549	0.0659	SF3B14->chr2:24290454-24299313:-,DTNB->chr2:25600067-25896503:-,dystrobrevin_beta	HEC151_ENDOMETRIUM	0.02	0.32	0.1208	TRUE	0	0	0	1	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-TA--MT-TC	6	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0659	0.011	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC151_ENDOMETRIUM	1	1	0.0769	FALSE	462	80	0	856	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	SDF4--MT-ND4L	5	5	SDF4	2252	chr1:1164215:-	MT-ND4L	13838	chrM:10471:+	INCL_NON_REF_SPLICE	YES	403	0	0.02	1	0.0549	0.0549	SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEC151_ENDOMETRIUM	0.02	1	0.1098	FALSE	0	0	0	7	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--hsa-mir-6723	3	10	MTATP6P1	1158	chr1:569233:+	hsa-mir-6723	4715	chr1:566487:+	INCL_NON_REF_SPLICE	YES	3197	0	0	1	0.0329	0.1098	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0	1	0.1427	TRUE	1	3	0	3	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--hsa-mir-6723	5	1	MTATP6P1	1108	chr1:569183:+	hsa-mir-6723	5324	chr1:567096:+	INCL_NON_REF_SPLICE	YES	1196	1275	0	0	0.0549	0.011	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0	0	0.0659	FALSE	2	7	0	3	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--hsa-mir-6723	5	1	MTATP6P1	1106	chr1:569181:+	hsa-mir-6723	5169	chr1:566941:+	INCL_NON_REF_SPLICE	YES	1067	1457	0.01	0	0.0549	0.011	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0	0.01	0.0659	FALSE	2	7	0	3	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTND4P12--MTND2P28	4	5	MTND4P12	1984	chr5:134262743:-	MTND2P28	5413	chr1:565055:+	INCL_NON_REF_SPLICE	YES	6	0	0.6	1	0.0439	0.0549	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HEC151_ENDOMETRIUM	0.6	1	0.0988	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--MTND2P28	4	4	MTATP6P1	1137	chr1:569212:+	MTND2P28	4927	chr1:565265:+	INCL_NON_REF_SPLICE	YES	2489	4809	0	0	0.0439	0.0439	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HEC151_ENDOMETRIUM	0	0	0.0878	FALSE	20	3	0	12	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTND4P12--MTND2P28	5	0	MTND4P12	1244	chr5:134263483:-	MTND2P28	6170	chr1:565812:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0549	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HEC151_ENDOMETRIUM	1	1	0.0549	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	5	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0549	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC151_ENDOMETRIUM	1	1	0.0549	FALSE	515	4851	409	746	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-TA--MT-TC	4	3	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0.0329	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC151_ENDOMETRIUM	1	1	0.0768	FALSE	462	80	0	856	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTND4P12--hsa-mir-6723	3	7	MTND4P12	1988	chr5:134262739:-	hsa-mir-6723	5406	chr1:566482:+	INCL_NON_REF_SPLICE	YES	7	0	0.59	1	0.0329	0.0769	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0.59	1	0.1098	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--MTND2P28	4	2	MTATP6P1	1108	chr1:569183:+	MTND2P28	4862	chr1:565200:+	INCL_NON_REF_SPLICE	YES	1194	4818	0.01	0	0.0439	0.022	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HEC151_ENDOMETRIUM	0	0.01	0.0659	FALSE	20	3	0	12	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--hsa-mir-6723	3	6	MTATP6P1	1141	chr1:569216:+	hsa-mir-6723	4697	chr1:566469:+	INCL_NON_REF_SPLICE	YES	2655	0	0	1	0.0329	0.0659	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0	1	0.0988	FALSE	1	3	0	3	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	FOXO1--LINC00598	4	1	FOXO1	2015	chr13:41239720:-	LINC00598	16798	chr13:41034543:-	ONLY_REF_SPLICE	YES	36	1	0.12	0.83	0.0439	0.011	NEIGHBORS[74661],FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,LINC00598->chr13:41025131-41055143:-,long_intergenic_non-protein_coding_RNA_598	HEC151_ENDOMETRIUM	0.12	0.83	0.0549	FALSE	8	15	1	11	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--MTND2P28	4	1	MTATP6P1	1108	chr1:569183:+	MTND2P28	4904	chr1:565242:+	INCL_NON_REF_SPLICE	YES	1194	5335	0	0	0.0439	0.011	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HEC151_ENDOMETRIUM	0	0	0.0549	FALSE	20	3	0	12	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--MTND2P28	4	1	MTATP6P1	1112	chr1:569187:+	MTND2P28	4908	chr1:565246:+	INCL_NON_REF_SPLICE	YES	1299	5095	0	0	0.0439	0.011	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HEC151_ENDOMETRIUM	0	0	0.0549	FALSE	20	3	0	12	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--MTND2P28	3	5	MTATP6P1	1124	chr1:569199:+	MTND2P28	4684	chr1:565022:+	INCL_NON_REF_SPLICE	YES	1673	0	0	1	0.0329	0.0549	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HEC151_ENDOMETRIUM	0	1	0.0878	FALSE	20	3	0	12	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEC151_ENDOMETRIUM	1	1	0.0439	FALSE	462	80	0	856	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HEC151_ENDOMETRIUM	1	1	0.0439	FALSE	369	2501	205	193	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--MTND2P28	4	0	MTATP6P1	1121	chr1:569196:+	MTND2P28	5397	chr1:565735:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0	GTEx_FI:{Heart=[count:13=pct:5.2],Brain=[count:12=pct:1.8],Liver=[count:2=pct:1.7],Muscle=[count:2=pct:0.9],Salivary_Gland=[count:1=pct:2.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},LOCAL_REARRANGEMENT:+:[3013],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MTND2P28->chr1:565020-566063:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2_pseudogene_28	HEC151_ENDOMETRIUM	1	1	0.0439	TRUE	20	3	0	12	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTND4P12--hsa-mir-6723	3	4	MTND4P12	1968	chr5:134262759:-	hsa-mir-6723	6059	chr1:567135:+	INCL_NON_REF_SPLICE	YES	9	1180	0.44	0.01	0.0329	0.0439	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0.01	0.44	0.0768	FALSE	0	0	0	1	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HEC151_ENDOMETRIUM	1	1	0.0439	TRUE	0	0	0	434	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	NPM1P24--SET	4	0	NPM1P24	1533	chr10:74677760:-	SET	12307	chr9:131456202:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0439	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HEC151_ENDOMETRIUM	1	1	0.0439	TRUE	0	0	0	434	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTND4P12--hsa-mir-6723	3	3	MTND4P12	1898	chr5:134262829:-	hsa-mir-6723	6060	chr1:567136:+	INCL_NON_REF_SPLICE	NO	24	1170	0.2	0.01	0.0329	0.0329	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0.01	0.2	0.0658	FALSE	0	0	0	1	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	JSRP1--RPS28	3	2	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0329	0.022	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HEC151_ENDOMETRIUM	0.83	1	0.0549	TRUE	0	1	0	84	1	FALSE	ACH-000972
HEC151_ENDOMETRIUM	JSRP1--RPS28	3	1	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0329	0.011	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HEC151_ENDOMETRIUM	0.8	1	0.0439	TRUE	0	1	0	84	1	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MT-ND6--MT-TE	3	1	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0.011	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEC151_ENDOMETRIUM	1	1	0.0439	FALSE	499	1288	110	792	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	MTATP6P1--hsa-mir-6723	3	1	MTATP6P1	1110	chr1:569185:+	hsa-mir-6723	5609	chr1:567381:+	INCL_NON_REF_SPLICE	NO	1265	2686	0	0	0.0329	0.011	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	HEC151_ENDOMETRIUM	0	0	0.0439	FALSE	2	7	0	3	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	SLC20A2--WHSC1L1	3	1	SLC20A2	1389	chr8:42396681:-	WHSC1L1	30315	chr8:38205733:-	ONLY_REF_SPLICE	YES	95	29	0.04	0.12	0.0329	0.011	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,WHSC1L1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1-like_1,chr8:38127215-38239790:-	HEC151_ENDOMETRIUM	0.04	0.12	0.0439	TRUE	0	0	0	1	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	AL136376.1--RPS28	3	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HEC151_ENDOMETRIUM	1	1	0.0329	TRUE	0	0	0	12	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	HSPBP1--GRK5	3	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HEC151_ENDOMETRIUM	1	1	0.0329	TRUE	1	39	0	134	39	FALSE	ACH-000972
HEC151_ENDOMETRIUM	HSPBP1--GRK5	3	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0329	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HEC151_ENDOMETRIUM	1	1	0.0329	TRUE	1	39	0	134	39	FALSE	ACH-000972
HEC151_ENDOMETRIUM	RCC1--GNAS	3	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0329	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HEC151_ENDOMETRIUM	1	1	0.0329	TRUE	0	3	0	13	2	TRUE	ACH-000972
HEC151_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.022	0.022	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC151_ENDOMETRIUM	0.5	1	0.044	FALSE	407	2205	196	549	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	NAE1--CCT6P1	2	0	NAE1	1142	chr16:66907018:-	CCT6P1	30481	chr7:65225411:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	NAE1->NEDD8_activating_enzyme_E1_subunit_1,chr16:66836778-66907159:-,CCT6P1->chaperonin_containing_TCP1_subunit_6_pseudogene_1,chr7:65216129-65228341:+	HEC151_ENDOMETRIUM	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	NPM1--PUS1	2	0	NPM1	5819	chr5:170819982:+	PUS1	18273	chr12:132416720:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),PUS1->chr12:132413745-132428406:+,pseudouridylate_synthase_1	HEC151_ENDOMETRIUM	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HEC151_ENDOMETRIUM	1	1	0.022	FALSE	467	2173	244	435	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	SETD8--CDK2AP1	2	0	SETD8	1436	chr12:123868755:+	CDK2AP1	20256	chr12:123751829:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	{Klijn_CCL:Colo-Rectal=1,Stomach=1,Skin=1,Sarcomatoid=1},SETD8->chr12:123868320-123893905:+,CDK2AP1->Oncogene{Bushman},chr12:123745528-123756881:-,cyclin-dependent_kinase_2_associated_protein_1	HEC151_ENDOMETRIUM	1	1	0.022	TRUE	0	0	0	18	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	UBE2V2--MCM4	2	0	UBE2V2	1071	chr8:48921030:+	MCM4	16151	chr8:48873691:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	LOCAL_REARRANGEMENT:+:[30240],UBE2V2->chr8:48920960-48977268:+,ubiquitin_conjugating_enzyme_E2_V2,MCM4->chr8:48872745-48890720:+,minichromosome_maintenance_complex_component_4	HEC151_ENDOMETRIUM	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000972
HEC151_ENDOMETRIUM	FARP2--SEPT2	1	1	FARP2	2877	chr2:242312705:+	SEPT2	54037	chr2:242274541:+	ONLY_REF_SPLICE	NO	34	767	0.06	0	0.011	0.011	LOCAL_REARRANGEMENT:+:[2216],FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+,SEPT2->Oncogene{Bushman},chr2:242254515-242293442:+,septin_2	HEC151_ENDOMETRIUM	0	0.06	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	GNB2L1--NPM1	1	1	GNB2L1	9574	chr5:180664609:-	NPM1	16420	chr5:170818309:+	ONLY_REF_SPLICE	YES	366	4447	0.01	0	0.011	0.011	GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HEC151_ENDOMETRIUM	0	0.01	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	LINC00473--PDE10A	1	1	LINC00473	1520	chr6:166401017:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	27	0	0.07	1	0.011	0.011	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	HEC151_ENDOMETRIUM	0.07	1	0.022	FALSE	6	13	0	15	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	SDF4--AGRN	1	1	SDF4	5392	chr1:1158624:-	AGRN	21067	chr1:978619:+	ONLY_REF_SPLICE	YES	402	589	0	0	0.011	0.011	SDF4->chr1:1152288-1167411:-,stromal_cell_derived_factor_4,AGRN->agrin,chr1:955503-991496:+	HEC151_ENDOMETRIUM	0	0	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	SNHG3--DDX39B	1	1	SNHG3	3181	chr1:28834672:+	DDX39B	14737	chr6:31503262:-	ONLY_REF_SPLICE	YES	60	1258	0.03	0	0.011	0.011	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,DDX39B->DEAD-box_helicase_39B,chr6:31497996-31510225:-	HEC151_ENDOMETRIUM	0	0.03	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000972
HEC151_ENDOMETRIUM	SNX3--PDSS2	1	1	SNX3	1435	chr6:108582030:-	PDSS2	11047	chr6:107655536:-	ONLY_REF_SPLICE	NO	294	62	0.01	0.03	0.011	0.011	SNX3->chr6:108532426-108582464:-,sorting_nexin_3,PDSS2->chr6:107473761-107780768:-,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_2	HEC151_ENDOMETRIUM	0.01	0.03	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000972
RERFGC1B_STOMACH	VTI1A--GFRA1	608	249	VTI1A	11748	chr10:114298089:+	GFRA1	35034	chr10:117825137:-	ONLY_REF_SPLICE	YES	52	1	0.94	1	6.8002	2.785	VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,GFRA1->GDNF_family_receptor_alpha_1,chr10:117816444-118032979:-	RERFGC1B_STOMACH	0.94	1	9.5852	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	TIMM23B--LINC00843	116	18	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2974	0.2013	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RERFGC1B_STOMACH	1	1	1.4987	TRUE	508	994	45	981	0	FALSE	ACH-000144
RERFGC1B_STOMACH	UACA--ARID1A	93	42	UACA	23836	chr15:70957001:-	ARID1A	45461	chr1:27094281:+	ONLY_REF_SPLICE	YES	110	24	0.55	0.85	1.0402	0.4698	{Klijn_CCL:Stomach=1},UACA->chr15:70946893-71055932:-,uveal_autoantigen_with_coiled-coil_domains_and_ankyrin_repeats,ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+	RERFGC1B_STOMACH	0.55	0.85	1.51	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	WDFY2--SERPINE3	69	18	WDFY2	2385	chr13:52234799:+	SERPINE3	27498	chr13:51929179:+	ONLY_REF_SPLICE	YES	9	0	0.91	1	0.7717	0.2013	{Klijn_CCL:Stomach=1},WDFY2->WD_repeat_and_FYVE_domain_containing_2,chr13:52158644-52336171:+,SERPINE3->chr13:51909909-51938871:+,serpin_family_E_member_3	RERFGC1B_STOMACH	0.91	1	0.973	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	TIMM23--RP11-464F9.1	67	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	170	1	0.29	0.99	0.7494	0.0336	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RERFGC1B_STOMACH	0.29	0.99	0.783	TRUE	519	3926	326	965	0	FALSE	ACH-000144
RERFGC1B_STOMACH	ZNF431--GSS	60	29	ZNF431	2256	chr19:21326446:+	GSS	17825	chr20:33539663:-	ONLY_REF_SPLICE	YES	8	0	0.92	1	0.6711	0.3244	ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431,GSS->chr20:33516236-33543620:-,glutathione_synthetase	RERFGC1B_STOMACH	0.92	1	0.9955	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RP11-680G10.1--GSE1	61	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	49	1	0.59	0.6823	0.1118	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RERFGC1B_STOMACH	0.59	1	0.7941	TRUE	465	1949	224	605	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MYOF--RP11-702H23.4	52	32	MYOF	4553	chr10:95211807:-	RP11-702H23.4	62789	chr11:74139378:+	ONLY_REF_SPLICE	YES	120	0	0.41	1	0.5816	0.3579	MYOF->chr10:95066186-95242074:-,myoferlin,RP11-702H23.4->chr11:74108594-74196787:+	RERFGC1B_STOMACH	0.41	1	0.9395	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	WDFY2--SERPINE3	57	9	WDFY2	2385	chr13:52234799:+	SERPINE3	28599	chr13:51935414:+	ONLY_REF_SPLICE	YES	9	2	0.88	0.97	0.6375	0.1007	{Klijn_CCL:Stomach=1},WDFY2->WD_repeat_and_FYVE_domain_containing_2,chr13:52158644-52336171:+,SERPINE3->chr13:51909909-51938871:+,serpin_family_E_member_3	RERFGC1B_STOMACH	0.88	0.97	0.7382	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MYOF--RP11-702H23.4	50	32	MYOF	4553	chr10:95211807:-	RP11-702H23.4	62786	chr11:74139375:+	INCL_NON_REF_SPLICE	YES	120	0	0.41	1	0.5592	0.3579	MYOF->chr10:95066186-95242074:-,myoferlin,RP11-702H23.4->chr11:74108594-74196787:+	RERFGC1B_STOMACH	0.41	1	0.9171	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	PACSIN2--MCAT	54	11	PACSIN2	1125	chr22:43411027:-	MCAT	31207	chr22:43529492:-	ONLY_REF_SPLICE	YES	41	27	0.61	0.71	0.604	0.123	PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,MCAT->chr22:43528212-43539400:-,malonyl-CoA-acyl_carrier_protein_transacylase	RERFGC1B_STOMACH	0.61	0.71	0.727	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RP11-6N13.1--CTD-2374C24.1	54	10	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.604	0.1118	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	RERFGC1B_STOMACH	0.98	1	0.7158	TRUE	5	4	0	46	0	FALSE	ACH-000144
RERFGC1B_STOMACH	PSEN1--RBM25	50	17	PSEN1	1166	chr14:73603291:+	RBM25	34817	chr14:73543027:+	ONLY_REF_SPLICE	YES	27	168	0.71	0.29	0.5592	0.1901	LOCAL_REARRANGEMENT:+:[15004],PSEN1->chr14:73603126-73690399:+,presenilin_1,RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+	RERFGC1B_STOMACH	0.29	0.71	0.7493	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	VTI1A--UBE2D1	47	15	VTI1A	6899	chr10:114224416:+	UBE2D1	25803	chr10:60123369:+	ONLY_REF_SPLICE	YES	183	102	0.25	0.38	0.5257	0.1678	{Klijn_CCL:Stomach=1},VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,UBE2D1->chr10:60094735-60130513:+,ubiquitin_conjugating_enzyme_E2_D1	RERFGC1B_STOMACH	0.25	0.38	0.6935	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	PRPF40B--COQ5	48	7	PRPF40B	10225	chr12:50017376:+	COQ5	33625	chr12:120947926:-	ONLY_REF_SPLICE	YES	4	99	0.93	0.36	0.5369	0.0783	PRPF40B->chr12:49962001-50038449:+,pre-mRNA_processing_factor_40_homolog_B,COQ5->chr12:120941077-120972237:-,coenzyme_Q5,_methyltransferase	RERFGC1B_STOMACH	0.36	0.93	0.6152	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	LINC00664--UPF1	45	18	LINC00664	12167	chr19:21681151:+	UPF1	22026	chr19:18956789:+	ONLY_REF_SPLICE	YES	5	3	0.93	0.95	0.5033	0.2013	LINC00664->chr19:21666176-21686040:+,long_intergenic_non-protein_coding_RNA_664,UPF1->UPF1,_RNA_helicase_and_ATPase,chr19:18942747-18979045:+	RERFGC1B_STOMACH	0.93	0.95	0.7046	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	CROCCP2--ABCC1	44	1	CROCCP2	1038	chr1:16971141:-	ABCC1	18554	chr16:16101673:+	ONLY_REF_SPLICE	YES	0	3	1	0.94	0.4921	0.0112	CROCCP2->chr1:16944751-16971178:-,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_2,ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+	RERFGC1B_STOMACH	0.94	1	0.5033	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	SMARCC2--ANKRD52	40	15	SMARCC2	2337	chr12:56580971:-	ANKRD52	31767	chr12:56642599:-	INCL_NON_REF_SPLICE	YES	124	63	0.31	0.47	0.4474	0.1678	LOCAL_REARRANGEMENT:-:[48240],SMARCC2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_2,chr12:56556767-56583351:-,ANKRD52->ankyrin_repeat_domain_52,chr12:56631591-56652175:-	RERFGC1B_STOMACH	0.31	0.47	0.6152	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	PACSIN2--MCAT	36	18	PACSIN2	1125	chr22:43411027:-	MCAT	29989	chr22:43533304:-	ONLY_REF_SPLICE	YES	41	27	0.57	0.67	0.4026	0.2013	PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,MCAT->chr22:43528212-43539400:-,malonyl-CoA-acyl_carrier_protein_transacylase	RERFGC1B_STOMACH	0.57	0.67	0.6039	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	QRICH1--ACSBG1	36	16	QRICH1	5617	chr3:49114142:-	ACSBG1	25504	chr15:78500444:-	ONLY_REF_SPLICE	YES	86	1	0.38	0.98	0.4026	0.179	QRICH1->chr3:49067140-49131796:-,glutamine_rich_1,ACSBG1->acyl-CoA_synthetase_bubblegum_family_member_1,chr15:78459810-78538030:-	RERFGC1B_STOMACH	0.38	0.98	0.5816	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RP11-680G10.1--GSE1	33	16	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	34	1	0.59	0.3691	0.179	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RERFGC1B_STOMACH	0.59	1	0.5481	TRUE	458	1351	185	561	0	FALSE	ACH-000144
RERFGC1B_STOMACH	SCARB1--UBC	33	15	SCARB1	14299	chr12:125292307:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	170	154	0.22	0.24	0.3691	0.1678	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	RERFGC1B_STOMACH	0.22	0.24	0.5369	TRUE	2	3	0	2	0	FALSE	ACH-000144
RERFGC1B_STOMACH	DCAF10--CENPP	31	15	DCAF10	3018	chr9:37819398:+	CENPP	24173	chr9:95142045:+	ONLY_REF_SPLICE	YES	11	10	0.81	0.82	0.3467	0.1678	{Klijn_CCL:Stomach=1},DCAF10->DDB1_and_CUL4_associated_factor_10,chr9:37800499-37867663:+,CENPP->centromere_protein_P,chr9:95087766-95382815:+	RERFGC1B_STOMACH	0.81	0.82	0.5145	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	ZNF429--UPF1	31	10	ZNF429	2192	chr19:21681151:+	UPF1	21503	chr19:18956789:+	ONLY_REF_SPLICE	YES	0	3	1	0.93	0.3467	0.1118	ZNF429->chr19:21679484-21739072:+,zinc_finger_protein_429,UPF1->UPF1,_RNA_helicase_and_ATPase,chr19:18942747-18979045:+	RERFGC1B_STOMACH	0.93	1	0.4585	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ND4L	10	93	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	4957	1	0.02	0.99	0.1118	1.0402	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFGC1B_STOMACH	0.02	0.99	1.152	FALSE	344	827	44	306	0	FALSE	ACH-000144
RERFGC1B_STOMACH	GBF1--WBP1L	30	7	GBF1	9564	chr10:104118486:+	WBP1L	33839	chr10:104557750:+	ONLY_REF_SPLICE	YES	48	41	0.44	0.47	0.3355	0.0783	GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1,WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+	RERFGC1B_STOMACH	0.44	0.47	0.4138	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ND4L	7	93	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	11	1	0.9	0.99	0.0783	1.0402	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFGC1B_STOMACH	0.9	0.99	1.1185	FALSE	344	826	44	306	0	FALSE	ACH-000144
RERFGC1B_STOMACH	SMARCC2--ANKRD52	23	26	SMARCC2	2829	chr12:56580479:-	ANKRD52	31767	chr12:56642599:-	INCL_NON_REF_SPLICE	YES	133	63	0.27	0.44	0.2572	0.2908	LOCAL_REARRANGEMENT:-:[48240],SMARCC2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_2,chr12:56556767-56583351:-,ANKRD52->ankyrin_repeat_domain_52,chr12:56631591-56652175:-	RERFGC1B_STOMACH	0.27	0.44	0.548	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	ZNF365--GPR158-AS1	28	5	ZNF365	1267	chr10:64134217:+	GPR158-AS1	28945	chr10:25448832:-	ONLY_REF_SPLICE	YES	1	1	0.97	0.97	0.3132	0.0559	ZNF365->chr10:64133951-64431771:+,zinc_finger_protein_365,GPR158-AS1->GPR158_antisense_RNA_1,chr10:25447001-25465205:-	RERFGC1B_STOMACH	0.97	0.97	0.3691	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ND4L	5	92	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	1	0.95	0.99	0.0559	1.029	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFGC1B_STOMACH	0.95	0.99	1.0849	FALSE	344	821	44	306	0	FALSE	ACH-000144
RERFGC1B_STOMACH	SEPT9--SEC14L1	24	1	SEPT9	1986	chr17:75277636:+	SEC14L1	55433	chr17:75138728:+	ONLY_REF_SPLICE	YES	1	76	0.96	0.25	0.2684	0.0112	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],LOCAL_REARRANGEMENT:+:[63472],SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,SEC14L1->SEC14_like_lipid_binding_1,chr17:75082798-75213179:+	RERFGC1B_STOMACH	0.25	0.96	0.2796	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	PAIP1--TEK	20	6	PAIP1	2929	chr5:43555932:-	TEK	18109	chr9:27157829:+	ONLY_REF_SPLICE	YES	105	0	0.2	1	0.2237	0.0671	PAIP1->chr5:43526369-43557860:-,poly(A)_binding_protein_interacting_protein_1,TEK->Oncogene{Bushman},TEK_receptor_tyrosine_kinase,chr9:27109139-27230173:+	RERFGC1B_STOMACH	0.2	1	0.2908	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RP11-123O10.4--GRIP1	21	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2349	0.0224	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RERFGC1B_STOMACH	1	1	0.2573	FALSE	416	2512	207	587	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND6--MT-TE	20	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2237	0.0447	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFGC1B_STOMACH	1	1	0.2684	FALSE	499	1288	110	792	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MYOF--RP11-632K5.2	18	9	MYOF	4553	chr10:95211807:-	RP11-632K5.2	62538	chr11:74126892:+	ONLY_REF_SPLICE	YES	120	0	0.18	1	0.2013	0.1007	MYOF->chr10:95066186-95242074:-,myoferlin,RP11-632K5.2->chr11:74120105-74127424:+	RERFGC1B_STOMACH	0.18	1	0.302	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	FBXL20--CHRDL2	16	12	FBXL20	2163	chr17:37557614:-	CHRDL2	24821	chr11:74429877:-	ONLY_REF_SPLICE	YES	5	2	0.85	0.93	0.179	0.1342	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	RERFGC1B_STOMACH	0.85	0.93	0.3132	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RTKN2--ACSS2	18	3	RTKN2	11553	chr10:63976877:-	ACSS2	44057	chr20:33514680:+	ONLY_REF_SPLICE	YES	18	83	0.54	0.2	0.2013	0.0336	RTKN2->chr10:63942794-64028466:-,rhotekin_2,ACSS2->acyl-CoA_synthetase_short-chain_family_member_2,chr20:33459949-33515769:+	RERFGC1B_STOMACH	0.2	0.54	0.2349	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	VTI1A--UBE2D1	16	11	VTI1A	6899	chr10:114224416:+	UBE2D1	26965	chr10:60124531:+	ONLY_REF_SPLICE	YES	183	87	0.13	0.24	0.179	0.123	{Klijn_CCL:Stomach=1},VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,UBE2D1->chr10:60094735-60130513:+,ubiquitin_conjugating_enzyme_E2_D1	RERFGC1B_STOMACH	0.13	0.24	0.302	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	UACA--ARID1A	15	14	UACA	23836	chr15:70957001:-	ARID1A	46673	chr1:27097610:+	ONLY_REF_SPLICE	YES	110	39	0.21	0.43	0.1678	0.1566	{Klijn_CCL:Stomach=1},UACA->chr15:70946893-71055932:-,uveal_autoantigen_with_coiled-coil_domains_and_ankyrin_repeats,ARID1A->AT-rich_interaction_domain_1A,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:27022524-27108595:+	RERFGC1B_STOMACH	0.21	0.43	0.3244	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RP11-6N13.1--CTD-2374C24.1	16	7	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.179	0.0783	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	RERFGC1B_STOMACH	0.96	1	0.2573	TRUE	5	12	0	42	0	FALSE	ACH-000144
RERFGC1B_STOMACH	GBF1--WBP1L	13	16	GBF1	11955	chr10:104120877:+	WBP1L	33839	chr10:104557750:+	ONLY_REF_SPLICE	YES	38	41	0.43	0.41	0.1454	0.179	GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1,WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+	RERFGC1B_STOMACH	0.41	0.43	0.3244	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	NPM1P24--SET	16	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.179	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RERFGC1B_STOMACH	1	1	0.179	TRUE	0	0	0	434	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ATP8	13	8	MT-ND4	2053	chrM:11812:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10231	48	0	0.3	0.1454	0.0895	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFGC1B_STOMACH	0	0.3	0.2349	FALSE	231	215	16	283	0	FALSE	ACH-000144
RERFGC1B_STOMACH	RP11-420A23.1--LARP1B	14	3	RP11-420A23.1	3530	chr4:129224190:+	LARP1B	39467	chr4:129120594:+	ONLY_REF_SPLICE	YES	0	7	1	0.71	0.1566	0.0336	LOCAL_REARRANGEMENT:+:[69820],RP11-420A23.1->chr4:129213906-129440549:+,LARP1B->La_ribonucleoprotein_domain_family_member_1B,chr4:128982423-129144086:+	RERFGC1B_STOMACH	0.71	1	0.1902	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ND4L	5	38	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	5	0	0.9	1	0.0559	0.425	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFGC1B_STOMACH	0.9	1	0.4809	FALSE	344	821	44	306	0	FALSE	ACH-000144
RERFGC1B_STOMACH	FBXL20--CHRDL2	13	1	FBXL20	1351	chr17:37558426:-	CHRDL2	24821	chr11:74429877:-	ONLY_REF_SPLICE	YES	2	2	0.88	0.88	0.1454	0.0112	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	RERFGC1B_STOMACH	0.88	0.88	0.1566	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ND4L	3	41	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.0336	0.4586	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFGC1B_STOMACH	0.96	1	0.4922	FALSE	344	821	44	306	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND6--MT-TE	11	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.123	0.0783	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFGC1B_STOMACH	0.95	1	0.2013	FALSE	499	1288	110	792	0	FALSE	ACH-000144
RERFGC1B_STOMACH	VTI1A--UBE2D1	11	7	VTI1A	6899	chr10:114224416:+	UBE2D1	28071	chr10:60127683:+	ONLY_REF_SPLICE	YES	183	112	0.09	0.14	0.123	0.0783	{Klijn_CCL:Stomach=1},VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,UBE2D1->chr10:60094735-60130513:+,ubiquitin_conjugating_enzyme_E2_D1	RERFGC1B_STOMACH	0.09	0.14	0.2013	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	HSP90AB1--MT-RNR2	12	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1659	0	0.01	1	0.1342	0.0224	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFGC1B_STOMACH	0.01	1	0.1566	FALSE	13	9	0	364	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ND4L	4	33	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	769	0	0.05	1	0.0447	0.3691	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFGC1B_STOMACH	0.05	1	0.4138	FALSE	344	827	44	306	0	FALSE	ACH-000144
RERFGC1B_STOMACH	RP11-120D5.1--MID1	12	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	46	0.93	0.22	0.1342	0.0112	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RERFGC1B_STOMACH	0.22	0.93	0.1454	FALSE	16	356	14	466	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ND4L	6	22	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0671	0.2461	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFGC1B_STOMACH	0.9	1	0.3132	FALSE	344	821	44	306	0	FALSE	ACH-000144
RERFGC1B_STOMACH	SCARB1--UBC	8	12	SCARB1	14294	chr12:125292312:-	UBC	30726	chr12:125398320:-	INCL_NON_REF_SPLICE	YES	166	154	0.11	0.11	0.0895	0.1342	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	RERFGC1B_STOMACH	0.11	0.11	0.2237	TRUE	2	3	0	2	0	FALSE	ACH-000144
RERFGC1B_STOMACH	CBLC--BCL3	8	10	CBLC	7355	chr19:45295771:+	BCL3	17956	chr19:45259489:+	ONLY_REF_SPLICE	YES	123	19	0.13	0.49	0.0895	0.1118	LOCAL_REARRANGEMENT:+:[17825],CBLC->Cbl_proto-oncogene_C,Oncogene{Bushman},chr19:45281126-45303891:+,BCL3->B-cell_CLL/lymphoma_3,Oncogene{Bushman},chr19:45250962-45263301:+	RERFGC1B_STOMACH	0.13	0.49	0.2013	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	HSP90AB1--MT-RNR2	10	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1674	0	0.01	1	0.1118	0.0112	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFGC1B_STOMACH	0.01	1	0.123	FALSE	13	9	0	364	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ND4L	5	21	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	41	0	0.39	1	0.0559	0.2349	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFGC1B_STOMACH	0.39	1	0.2908	FALSE	344	826	44	306	0	FALSE	ACH-000144
RERFGC1B_STOMACH	RP11-96H19.1--RP11-446N19.1	9	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1007	0.0559	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFGC1B_STOMACH	0.88	1	0.1566	FALSE	407	2205	196	549	0	FALSE	ACH-000144
RERFGC1B_STOMACH	WNK2--RP11-613M10.9	9	3	WNK2	1695	chr9:95947892:+	RP11-613M10.9	43326	chr9:37974834:-	ONLY_REF_SPLICE	YES	2	18	0.86	0.4	0.1007	0.0336	WNK2->Oncogene{Bushman},WNK_lysine_deficient_protein_kinase_2,chr9:95947198-96082854:+,RP11-613M10.9->chr9:37588410-38068684:-	RERFGC1B_STOMACH	0.4	0.86	0.1343	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	PSEN1--RBM25	6	14	PSEN1	1162	chr14:73603287:+	RBM25	34817	chr14:73543027:+	ONLY_REF_SPLICE	YES	22	168	0.48	0.11	0.0671	0.1566	LOCAL_REARRANGEMENT:+:[15004],PSEN1->chr14:73603126-73690399:+,presenilin_1,RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+	RERFGC1B_STOMACH	0.11	0.48	0.2237	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	ARHGAP35--IGF2	5	17	ARHGAP35	15636	chr19:47507210:+	IGF2	30436	chr11:2153163:-	INCL_NON_REF_SPLICE	YES	141	6925	0.13	0	0.0559	0.1901	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RERFGC1B_STOMACH	0	0.13	0.246	TRUE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	CORO7--ANKS3	8	4	CORO7	7741	chr16:4462357:-	ANKS3	41195	chr16:4752243:-	ONLY_REF_SPLICE	YES	18	17	0.4	0.41	0.0895	0.0447	CORO7->chr16:4404543-4475706:-,coronin_7,ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-	RERFGC1B_STOMACH	0.4	0.41	0.1342	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	EPB41--SERINC2	8	4	EPB41	8280	chr1:29323831:+	SERINC2	45708	chr1:31905814:+	ONLY_REF_SPLICE	YES	28	89	0.3	0.12	0.0895	0.0447	EPB41->chr1:29213603-29446553:+,erythrocyte_membrane_protein_band_4.1,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	RERFGC1B_STOMACH	0.12	0.3	0.1342	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	IMMP2L--LAMB1	8	4	IMMP2L	4976	chr7:111127294:-	LAMB1	29214	chr7:107613516:-	ONLY_REF_SPLICE	YES	9	289	0.57	0.04	0.0895	0.0447	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,LAMB1->chr7:107564244-107643700:-,laminin_subunit_beta_1	RERFGC1B_STOMACH	0.04	0.57	0.1342	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MT-ND6--MT-TE	3	24	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0.2684	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFGC1B_STOMACH	1	1	0.302	FALSE	499	1288	110	792	0	FALSE	ACH-000144
RERFGC1B_STOMACH	TRPC4AP--EDEM2	8	4	TRPC4AP	9141	chr20:33622926:-	EDEM2	29874	chr20:33734738:-	ONLY_REF_SPLICE	YES	255	181	0.04	0.06	0.0895	0.0447	LOCAL_REARRANGEMENT:-:[22493],TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,EDEM2->ER_degradation_enhancing_alpha-mannosidase_like_protein_2,chr20:33703167-33865928:-	RERFGC1B_STOMACH	0.04	0.06	0.1342	TRUE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ATP8	7	7	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	11761	3	0	0.82	0.0783	0.0783	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFGC1B_STOMACH	0	0.82	0.1566	FALSE	231	217	16	283	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MIPOL1--RP11-356O9.1	8	2	MIPOL1	16919	chr14:37754652:+	RP11-356O9.1	45703	chr14:38047909:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0895	0.0224	NEIGHBORS[11686],MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1,RP11-356O9.1->chr14:38033252-38048330:+	RERFGC1B_STOMACH	0.83	1	0.1119	FALSE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND6--MT-TE	5	14	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0559	0.1566	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFGC1B_STOMACH	0.95	1	0.2125	FALSE	499	1288	110	792	0	FALSE	ACH-000144
RERFGC1B_STOMACH	FBXL20--CHRDL2	8	1	FBXL20	1351	chr17:37558426:-	CHRDL2	25934	chr11:74424524:-	ONLY_REF_SPLICE	YES	2	11	0.82	0.45	0.0895	0.0112	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	RERFGC1B_STOMACH	0.45	0.82	0.1007	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	SMG5--IGF2	8	1	SMG5	19586	chr1:156220290:-	IGF2	34644	chr11:2153056:-	INCL_NON_REF_SPLICE	YES	212	7197	0.04	0	0.0895	0.0112	SMG5->SMG5_nonsense_mediated_mRNA_decay_factor,chr1:156219015-156252620:-,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RERFGC1B_STOMACH	0	0.04	0.1007	TRUE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	ARHGAP35--IGF2	4	16	ARHGAP35	15636	chr19:47507210:+	IGF2	30469	chr11:2153130:-	INCL_NON_REF_SPLICE	YES	141	6911	0.12	0	0.0447	0.179	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RERFGC1B_STOMACH	0	0.12	0.2237	TRUE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	GBF1--WBP1L	5	12	GBF1	11230	chr10:104120152:+	WBP1L	33839	chr10:104557750:+	ONLY_REF_SPLICE	YES	48	41	0.26	0.29	0.0559	0.1342	GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1,WBP1L->WW_domain_binding_protein_1-like,chr10:104503727-104576021:+	RERFGC1B_STOMACH	0.26	0.29	0.1901	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MT-ND3--MT-ATP8	8	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0895	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFGC1B_STOMACH	1	1	0.0895	FALSE	351	233	23	137	0	FALSE	ACH-000144
RERFGC1B_STOMACH	SLC35G1--IKZF3	6	8	SLC35G1	1239	chr10:95653968:+	IKZF3	20768	chr17:37949186:-	ONLY_REF_SPLICE	YES	35	0	0.29	1	0.0671	0.0895	SLC35G1->chr10:95653730-95715819:+,solute_carrier_family_35_member_G1,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	RERFGC1B_STOMACH	0.29	1	0.1566	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	ARHGAP35--IGF2	4	15	ARHGAP35	15636	chr19:47507210:+	IGF2	30585	chr11:2153014:-	INCL_NON_REF_SPLICE	YES	141	7264	0.12	0	0.0447	0.1678	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RERFGC1B_STOMACH	0	0.12	0.2125	TRUE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ATP8	5	11	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	10641	0	0	1	0.0559	0.123	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFGC1B_STOMACH	0	1	0.1789	FALSE	231	215	16	283	0	FALSE	ACH-000144
RERFGC1B_STOMACH	RP11-304L19.1--C3orf62	7	3	RP11-304L19.1	1179	chr16:2141615:+	C3orf62	9886	chr3:49311573:-	ONLY_REF_SPLICE	YES	0	11	1	0.48	0.0783	0.0336	RP11-304L19.1->chr16:2141437-2145426:+,C3orf62->chr3:49306035-49315342:-,chromosome_3_open_reading_frame_62	RERFGC1B_STOMACH	0.48	1	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RP4-565E6.1--HYDIN	7	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0783	0.0336	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	RERFGC1B_STOMACH	0.91	1	0.1119	TRUE	456	1387	91	133	0	FALSE	ACH-000144
RERFGC1B_STOMACH	PACSIN2--TTLL1	7	2	PACSIN2	1125	chr22:43411027:-	TTLL1	28252	chr22:43475992:-	ONLY_REF_SPLICE	YES	41	7	0.18	0.56	0.0783	0.0224	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[24371],PACSIN2->Oncogene{Bushman},chr22:43231418-43411151:-,protein_kinase_C_and_casein_kinase_substrate_in_neurons_2,TTLL1->chr22:43435522-43485434:-,tubulin_tyrosine_ligase_like_1	RERFGC1B_STOMACH	0.18	0.56	0.1007	TRUE	0	1	0	1	1	TRUE	ACH-000144
RERFGC1B_STOMACH	SLC35G1--IKZF3	6	6	SLC35G1	1188	chr10:95653917:+	IKZF3	20768	chr17:37949186:-	ONLY_REF_SPLICE	YES	33	0	0.27	1	0.0671	0.0671	SLC35G1->chr10:95653730-95715819:+,solute_carrier_family_35_member_G1,IKZF3->IKAROS_family_zinc_finger_3,Oncogene{Bushman},chr17:37921198-38020441:-	RERFGC1B_STOMACH	0.27	1	0.1342	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-CO1	7	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0783	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFGC1B_STOMACH	1	1	0.0783	FALSE	183	104	9	328	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ATP8	7	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0783	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFGC1B_STOMACH	1	1	0.0783	FALSE	230	198	14	283	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND6--MT-TE	6	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0.0447	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFGC1B_STOMACH	1	1	0.1118	FALSE	499	1288	110	792	0	FALSE	ACH-000144
RERFGC1B_STOMACH	C15orf57--CBX3	5	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	30	38	0.29	0.24	0.0559	0.0783	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RERFGC1B_STOMACH	0.24	0.29	0.1342	TRUE	267	562	48	632	0	FALSE	ACH-000144
RERFGC1B_STOMACH	IPMK--PRKG1	5	7	IPMK	1513	chr10:60027182:-	PRKG1	23923	chr10:53814244:+	ONLY_REF_SPLICE	YES	16	0	0.43	1	0.0559	0.0783	IPMK->chr10:59951278-60027694:-,inositol_polyphosphate_multikinase,PRKG1->chr10:52750945-54058110:+,protein_kinase,_cGMP-dependent,_type_I	RERFGC1B_STOMACH	0.43	1	0.1342	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-RNR2	6	3	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	10119	8052	0	0	0.0671	0.0336	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFGC1B_STOMACH	0	0	0.1007	FALSE	63	17	1	58	0	FALSE	ACH-000144
RERFGC1B_STOMACH	CROCCP2--ABCC1	6	2	CROCCP2	2156	chr1:16969523:-	ABCC1	18554	chr16:16101673:+	ONLY_REF_SPLICE	YES	24	3	0.25	0.73	0.0671	0.0224	CROCCP2->chr1:16944751-16971178:-,ciliary_rootlet_coiled-coil,_rootletin_pseudogene_2,ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+	RERFGC1B_STOMACH	0.25	0.73	0.0895	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	NOS1AP--ATF6	6	1	NOS1AP	2581	chr1:162124266:+	ATF6	32094	chr1:161789423:+	ONLY_REF_SPLICE	YES	2	83	0.78	0.08	0.0671	0.0112	NOS1AP->chr1:162039564-162353321:+,nitric_oxide_synthase_1_adaptor_protein,ATF6->activating_transcription_factor_6,chr1:161736084-161933860:+	RERFGC1B_STOMACH	0.08	0.78	0.0783	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	NUMB--HEATR4	5	5	NUMB	7519	chr14:73876645:-	HEATR4	36587	chr14:73989928:-	ONLY_REF_SPLICE	YES	114	0	0.08	1	0.0559	0.0559	LOCAL_REARRANGEMENT:-:[14841],NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-,HEATR4->HEAT_repeat_containing_4,chr14:73945189-74025651:-	RERFGC1B_STOMACH	0.08	1	0.1118	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	ARHGAP35--IGF2	4	8	ARHGAP35	15596	chr19:47507170:+	IGF2	30544	chr11:2153055:-	INCL_NON_REF_SPLICE	YES	133	7148	0.08	0	0.0447	0.0895	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RERFGC1B_STOMACH	0	0.08	0.1342	TRUE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	IMMP2L--LAMB1	4	8	IMMP2L	7385	chr7:111032858:-	LAMB1	29214	chr7:107613516:-	ONLY_REF_SPLICE	YES	12	289	0.5	0.04	0.0447	0.0895	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,LAMB1->chr7:107564244-107643700:-,laminin_subunit_beta_1	RERFGC1B_STOMACH	0.04	0.5	0.1342	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MED12L--KLHL3	6	0	MED12L	18793	chr3:150959656:+	KLHL3	67899	chr5:137013343:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0	MED12L->chr3:150803484-151154860:+,mediator_complex_subunit_12_like,KLHL3->chr5:136953189-137071779:-,kelch_like_family_member_3	RERFGC1B_STOMACH	1	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MPP5--PLEKHH1	6	0	MPP5	1425	chr14:67708250:+	PLEKHH1	26844	chr14:68008551:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0	MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5,PLEKHH1->chr14:68000018-68056329:+,pleckstrin_homology,_MyTH4_and_FERM_domain_containing_H1	RERFGC1B_STOMACH	1	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MT-ND3--MT-ATP8	6	0	MT-ND3	1222	chrM:10280:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFGC1B_STOMACH	1	1	0.0671	FALSE	351	233	23	137	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ATP8	5	4	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	11806	1509	0	0.01	0.0559	0.0447	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFGC1B_STOMACH	0	0.01	0.1006	FALSE	231	217	16	283	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ATP8	4	8	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1940	48	0.01	0.2	0.0447	0.0895	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFGC1B_STOMACH	0.01	0.2	0.1342	FALSE	216	209	16	281	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-RNR2	5	3	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	9715	7910	0	0	0.0559	0.0336	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFGC1B_STOMACH	0	0	0.0895	FALSE	63	17	1	58	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ATP8	5	3	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	12436	0	0	1	0.0559	0.0336	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFGC1B_STOMACH	0	1	0.0895	FALSE	231	217	16	283	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MYOF--RP11-632K5.2	5	3	MYOF	4553	chr10:95211807:-	RP11-632K5.2	62798	chr11:74127152:+	INCL_NON_REF_SPLICE	YES	120	8	0.06	0.5	0.0559	0.0336	MYOF->chr10:95066186-95242074:-,myoferlin,RP11-632K5.2->chr11:74120105-74127424:+	RERFGC1B_STOMACH	0.06	0.5	0.0895	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ATP8	3	10	MT-ND4	2255	chrM:12014:+	MT-ATP8	5446	chrM:8433:+	INCL_NON_REF_SPLICE	YES	1613	0	0.01	1	0.0336	0.1118	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFGC1B_STOMACH	0.01	1	0.1454	FALSE	216	209	16	281	0	FALSE	ACH-000144
RERFGC1B_STOMACH	ARHGAP35--IGF2	3	9	ARHGAP35	15600	chr19:47507174:+	IGF2	30382	chr11:2153217:-	INCL_NON_REF_SPLICE	YES	121	5960	0.09	0	0.0336	0.1007	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RERFGC1B_STOMACH	0	0.09	0.1343	TRUE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	ARHGAP35--IGF2	3	9	ARHGAP35	15600	chr19:47507174:+	IGF2	30426	chr11:2153173:-	INCL_NON_REF_SPLICE	YES	121	6689	0.09	0	0.0336	0.1007	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RERFGC1B_STOMACH	0	0.09	0.1343	TRUE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	ARHGAP35--IGF2	3	9	ARHGAP35	15610	chr19:47507184:+	IGF2	30335	chr11:2153264:-	INCL_NON_REF_SPLICE	NO	121	4877	0.09	0	0.0336	0.1007	ARHGAP35->Rho_GTPase_activating_protein_35,chr19:47421933-47508334:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RERFGC1B_STOMACH	0	0.09	0.1343	FALSE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	LINC01036--LINC01037	5	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0559	0.0112	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	RERFGC1B_STOMACH	1	1	0.0671	FALSE	0	24	0	62	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ATP8	4	5	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	11727	864	0	0.01	0.0447	0.0559	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFGC1B_STOMACH	0	0.01	0.1006	FALSE	231	217	16	283	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ND4L	3	9	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	37	0	0.24	1	0.0336	0.1007	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFGC1B_STOMACH	0.24	1	0.1343	FALSE	344	826	44	306	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MYOF--RP11-702H23.4	5	1	MYOF	4553	chr10:95211807:-	RP11-702H23.4	64022	chr11:74195222:+	ONLY_REF_SPLICE	YES	120	0	0.05	1	0.0559	0.0112	MYOF->chr10:95066186-95242074:-,myoferlin,RP11-702H23.4->chr11:74108594-74196787:+	RERFGC1B_STOMACH	0.05	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	NPM1P24--SET	5	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	24	1260	0.2	0	0.0559	0.0112	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RERFGC1B_STOMACH	0	0.2	0.0671	FALSE	0	0	0	434	0	FALSE	ACH-000144
RERFGC1B_STOMACH	PSEN1--RBM25	1	17	PSEN1	1806	chr14:73603931:+	RBM25	34817	chr14:73543027:+	ONLY_REF_SPLICE	YES	50	168	0.26	0.1	0.0112	0.1901	LOCAL_REARRANGEMENT:+:[15004],PSEN1->chr14:73603126-73690399:+,presenilin_1,RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+	RERFGC1B_STOMACH	0.1	0.26	0.2013	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RP11-420A23.1--LARP1B	5	1	RP11-420A23.1	1372	chr4:129214277:+	LARP1B	39467	chr4:129120594:+	ONLY_REF_SPLICE	YES	1	7	0.86	0.46	0.0559	0.0112	LOCAL_REARRANGEMENT:+:[69820],RP11-420A23.1->chr4:129213906-129440549:+,LARP1B->La_ribonucleoprotein_domain_family_member_1B,chr4:128982423-129144086:+	RERFGC1B_STOMACH	0.46	0.86	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	SCARB1--UBC	2	13	SCARB1	14299	chr12:125292307:-	UBC	30735	chr12:125398311:-	ONLY_REF_SPLICE	YES	170	134	0.08	0.1	0.0224	0.1454	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	RERFGC1B_STOMACH	0.08	0.1	0.1678	TRUE	2	3	0	2	0	FALSE	ACH-000144
RERFGC1B_STOMACH	TRPC4AP--EDEM2	5	1	TRPC4AP	9141	chr20:33622926:-	EDEM2	32163	chr20:33730281:-	ONLY_REF_SPLICE	YES	255	111	0.02	0.05	0.0559	0.0112	LOCAL_REARRANGEMENT:-:[22493],TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,EDEM2->ER_degradation_enhancing_alpha-mannosidase_like_protein_2,chr20:33703167-33865928:-	RERFGC1B_STOMACH	0.02	0.05	0.0671	TRUE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	FBXL20--CHRDL2	3	8	FBXL20	2163	chr17:37557614:-	CHRDL2	25934	chr11:74424524:-	ONLY_REF_SPLICE	YES	5	11	0.69	0.5	0.0336	0.0895	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,CHRDL2->chordin-like_2,chr11:74407474-74442430:-	RERFGC1B_STOMACH	0.5	0.69	0.1231	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	LIN7A--SCARB1	4	4	LIN7A	2404	chr12:81283030:-	SCARB1	24720	chr12:125302253:-	ONLY_REF_SPLICE	YES	4	76	0.67	0.1	0.0447	0.0447	LIN7A->chr12:81186299-81331704:-,lin-7_homolog_A,_crumbs_cell_polarity_complex_component,SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1	RERFGC1B_STOMACH	0.1	0.67	0.0894	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-RNR2	4	4	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	NO	10119	0	0	1	0.0447	0.0447	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFGC1B_STOMACH	0	1	0.0894	FALSE	63	17	1	58	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-RNR2	5	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0559	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFGC1B_STOMACH	1	1	0.0559	FALSE	63	17	1	58	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ATP8	3	8	MT-ND4	2335	chrM:12094:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	48	1	0.19	0.0336	0.0895	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFGC1B_STOMACH	0.19	1	0.1231	FALSE	209	205	15	279	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-RNR2	4	2	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	9706	7946	0	0	0.0447	0.0224	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFGC1B_STOMACH	0	0	0.0671	FALSE	63	17	1	58	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ATP8	4	2	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	12505	0	0	1	0.0447	0.0224	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFGC1B_STOMACH	0	1	0.0671	FALSE	231	217	16	283	0	FALSE	ACH-000144
RERFGC1B_STOMACH	RP11-131N11.4--RTKN2	4	2	RP11-131N11.4	1087	chr10:62494186:+	RTKN2	18051	chr10:63964781:-	ONLY_REF_SPLICE	YES	0	18	1	0.25	0.0447	0.0224	RP11-131N11.4->chr10:62494100-62501586:+,RTKN2->chr10:63942794-64028466:-,rhotekin_2	RERFGC1B_STOMACH	0.25	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	ARHGAP26--STIP1	4	1	ARHGAP26	1532	chr5:142150480:+	STIP1	56250	chr11:63967412:+	ONLY_REF_SPLICE	YES	0	720	1	0.01	0.0447	0.0112	ARHGAP26->Oncogene{Bushman},Rho_GTPase_activating_protein_26,chr5:142149949-142608576:+,STIP1->chr11:63952744-63972015:+,stress_induced_phosphoprotein_1	RERFGC1B_STOMACH	0.01	1	0.0559	FALSE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-CO1	4	1	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	9501	0	0	1	0.0447	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFGC1B_STOMACH	0	1	0.0559	FALSE	182	97	9	327	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-RNR2	3	5	MT-ATP6	1295	chrM:8821:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	13876	8098	0	0	0.0336	0.0559	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFGC1B_STOMACH	0	0	0.0895	FALSE	63	17	1	58	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ATP8	4	1	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	9248	0	0	1	0.0447	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFGC1B_STOMACH	0	1	0.0559	FALSE	230	197	14	283	0	FALSE	ACH-000144
RERFGC1B_STOMACH	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	24	1245	0.17	0	0.0447	0.0112	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RERFGC1B_STOMACH	0	0.17	0.0559	FALSE	0	0	0	434	0	FALSE	ACH-000144
RERFGC1B_STOMACH	RARS2--C6orf165	4	1	RARS2	20052	chr6:88224146:-	C6orf165	41955	chr6:88210226:+	INCL_NON_REF_SPLICE	YES	0	18	1	0.22	0.0447	0.0112	LOCAL_INVERSION:-:+:[2744],RARS2->arginyl-tRNA_synthetase_2,_mitochondrial,chr6:88224096-88299721:-,C6orf165->chr6:88117730-88221352:+	RERFGC1B_STOMACH	0.22	1	0.0559	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	ROR2--CR848007.2	4	1	ROR2	9887	chr9:94518353:-	CR848007.2	28034	chr9:44059515:-	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0447	0.0112	ROR2->Oncogene{Bushman},chr9:94325373-94712444:-,receptor_tyrosine_kinase_like_orphan_receptor_2,CR848007.2->chr9:44051024-44069881:-	RERFGC1B_STOMACH	0.71	1	0.0559	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	SCARB1--UBC	4	1	SCARB1	12016	chr12:125296416:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	157	154	0.03	0.03	0.0447	0.0112	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	RERFGC1B_STOMACH	0.03	0.03	0.0559	TRUE	1	2	0	2	1	FALSE	ACH-000144
RERFGC1B_STOMACH	FTL--MT-CO1	4	0	FTL	1122	chr19:49468679:+	MT-CO1	6221	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFGC1B_STOMACH	1	1	0.0447	FALSE	0	7	0	14	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFGC1B_STOMACH	1	1	0.0447	FALSE	63	17	1	58	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ATP8	4	0	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0447	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFGC1B_STOMACH	1	1	0.0447	FALSE	230	191	14	283	0	FALSE	ACH-000144
RERFGC1B_STOMACH	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFGC1B_STOMACH	1	1	0.0447	FALSE	292	1546	117	613	0	FALSE	ACH-000144
RERFGC1B_STOMACH	PRPF6--PRIM2	4	0	PRPF6	10113	chr20:62641671:+	PRIM2	31141	chr6:57244699:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	PRPF6->chr20:62612488-62664453:+,pre-mRNA_processing_factor_6,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	RERFGC1B_STOMACH	1	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	SH3GL2--RP11-135D11.2	4	0	SH3GL2	1206	chr9:17579285:+	RP11-135D11.2	18947	chr10:61354710:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	SH3GL2->Oncogene{Bushman},SH3_domain_containing_GRB2_like_2,chr9:17579080-17797127:+,RP11-135D11.2->chr10:61348908-61371006:+	RERFGC1B_STOMACH	1	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	SMG5--IGF2	3	4	SMG5	19606	chr1:156220270:-	IGF2	34664	chr11:2153036:-	INCL_NON_REF_SPLICE	YES	224	7149	0.03	0	0.0336	0.0447	SMG5->SMG5_nonsense_mediated_mRNA_decay_factor,chr1:156219015-156252620:-,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RERFGC1B_STOMACH	0	0.03	0.0783	FALSE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	ZNF462--RP11-308N19.1	4	0	ZNF462	1259	chr9:109625636:+	RP11-308N19.1	34027	chr9:109320753:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0447	0	ZNF462->chr9:109625378-109775915:+,zinc_finger_protein_462,RP11-308N19.1->chr9:109040673-109367076:+	RERFGC1B_STOMACH	1	1	0.0447	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	FBRSL1--IGF2	3	3	FBRSL1	16141	chr12:133148034:+	IGF2	38420	chr11:2153092:-	INCL_NON_REF_SPLICE	NO	58	6776	0.09	0	0.0336	0.0336	FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RERFGC1B_STOMACH	0	0.09	0.0672	FALSE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	IMMP2L--LAMB1	1	10	IMMP2L	9529	chr7:111030627:-	LAMB1	29214	chr7:107613516:-	ONLY_REF_SPLICE	YES	9	289	0.55	0.04	0.0112	0.1118	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,LAMB1->chr7:107564244-107643700:-,laminin_subunit_beta_1	RERFGC1B_STOMACH	0.04	0.55	0.123	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1555	chrM:9081:+	MT-RNR2	5408	chrM:2397:+	INCL_NON_REF_SPLICE	YES	3098	9829	0	0	0.0336	0.0224	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFGC1B_STOMACH	0	0	0.056	FALSE	63	17	1	58	0	FALSE	ACH-000144
RERFGC1B_STOMACH	PSEN1--RBM25	1	10	PSEN1	1166	chr14:73603291:+	RBM25	35867	chr14:73544077:+	ONLY_REF_SPLICE	NO	27	173	0.29	0.06	0.0112	0.1118	LOCAL_REARRANGEMENT:+:[15004],PSEN1->chr14:73603126-73690399:+,presenilin_1,RBM25->RNA_binding_motif_protein_25,chr14:73525144-73588122:+	RERFGC1B_STOMACH	0.06	0.29	0.123	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	DCAF10--CENPP	1	9	DCAF10	3018	chr9:37819398:+	CENPP	27292	chr9:95373596:+	ONLY_REF_SPLICE	NO	11	14	0.48	0.42	0.0112	0.1007	{Klijn_CCL:Stomach=1},DCAF10->DDB1_and_CUL4_associated_factor_10,chr9:37800499-37867663:+,CENPP->centromere_protein_P,chr9:95087766-95382815:+	RERFGC1B_STOMACH	0.42	0.48	0.1119	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	FBRSL1--IGF2	3	1	FBRSL1	16150	chr12:133148043:+	IGF2	38581	chr11:2152931:-	INCL_NON_REF_SPLICE	YES	60	7412	0.06	0	0.0336	0.0112	FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RERFGC1B_STOMACH	0	0.06	0.0448	FALSE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	FBRSL1--IGF2	3	1	FBRSL1	16156	chr12:133148049:+	IGF2	38584	chr11:2152928:-	INCL_NON_REF_SPLICE	YES	60	7516	0.06	0	0.0336	0.0112	FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RERFGC1B_STOMACH	0	0.06	0.0448	FALSE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	FBRSL1--IGF2	3	1	FBRSL1	16124	chr12:133148017:+	IGF2	38453	chr11:2153059:-	INCL_NON_REF_SPLICE	YES	56	7281	0.07	0	0.0336	0.0112	FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RERFGC1B_STOMACH	0	0.07	0.0448	FALSE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	FBRSL1--IGF2	3	1	FBRSL1	16124	chr12:133148017:+	IGF2	38177	chr11:2153335:-	INCL_NON_REF_SPLICE	NO	56	3921	0.07	0	0.0336	0.0112	FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RERFGC1B_STOMACH	0	0.07	0.0448	FALSE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-CO1	3	1	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	10535	16214	0	0	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFGC1B_STOMACH	0	0	0.0448	FALSE	183	104	9	328	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-CO1	3	1	MT-ATP6	1189	chrM:8715:+	MT-CO1	5220	chrM:6442:+	INCL_NON_REF_SPLICE	YES	11746	16180	0	0	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFGC1B_STOMACH	0	0	0.0448	FALSE	183	104	9	328	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	8899	0	0	1	0.0336	0.0112	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFGC1B_STOMACH	0	1	0.0448	FALSE	63	17	1	58	0	FALSE	ACH-000144
RERFGC1B_STOMACH	PRPF6--PRIM2	3	1	PRPF6	11298	chr20:62642856:+	PRIM2	31141	chr6:57244699:+	ONLY_REF_SPLICE	YES	105	23	0.04	0.15	0.0336	0.0112	PRPF6->chr20:62612488-62664453:+,pre-mRNA_processing_factor_6,PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2	RERFGC1B_STOMACH	0.04	0.15	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.67	0.8	0.0336	0.0112	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFGC1B_STOMACH	0.67	0.8	0.0448	FALSE	515	4851	409	746	0	FALSE	ACH-000144
RERFGC1B_STOMACH	SCARB1--UBC	3	1	SCARB1	10920	chr12:125298748:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	202	154	0.02	0.03	0.0336	0.0112	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	RERFGC1B_STOMACH	0.02	0.03	0.0448	TRUE	1	0	0	5	0	FALSE	ACH-000144
RERFGC1B_STOMACH	ZNF431--GSS	2	5	ZNF431	1163	chr19:21324989:+	GSS	17825	chr20:33539663:-	ONLY_REF_SPLICE	YES	9	0	0.44	1	0.0224	0.0559	ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431,GSS->chr20:33516236-33543620:-,glutathione_synthetase	RERFGC1B_STOMACH	0.44	1	0.0783	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	ZNF431--GSS	3	1	ZNF431	1110	chr19:21324936:+	GSS	17825	chr20:33539663:-	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0336	0.0112	ZNF431->chr19:21324827-21373034:+,zinc_finger_protein_431,GSS->chr20:33516236-33543620:-,glutathione_synthetase	RERFGC1B_STOMACH	0.8	1	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	AP1G2--MT-CO3	3	0	AP1G2	6733	chr14:24031547:-	MT-CO3	12567	chrM:9267:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	AP1G2->adaptor_related_protein_complex_1_gamma_2_subunit,chr14:24028774-24037279:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	RERFGC1B_STOMACH	1	1	0.0336	FALSE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	FBRSL1--IGF2	3	0	FBRSL1	16112	chr12:133148005:+	IGF2	38478	chr11:2153034:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	RERFGC1B_STOMACH	1	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	FTL--MT-CO1	3	0	FTL	1134	chr19:49468691:+	MT-CO1	6232	chrM:6557:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFGC1B_STOMACH	1	1	0.0336	FALSE	0	7	0	14	0	FALSE	ACH-000144
RERFGC1B_STOMACH	LINC01036--LINC01037	3	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0336	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	RERFGC1B_STOMACH	1	1	0.0336	FALSE	0	26	0	50	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFGC1B_STOMACH	1	1	0.0336	FALSE	183	104	9	328	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFGC1B_STOMACH	1	1	0.0336	FALSE	183	104	9	328	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFGC1B_STOMACH	1	1	0.0336	FALSE	183	104	9	328	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1113	chrM:8639:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFGC1B_STOMACH	1	1	0.0336	FALSE	183	104	9	328	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFGC1B_STOMACH	1	1	0.0336	FALSE	183	104	9	328	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1132	chrM:8658:+	MT-CO1	5255	chrM:6477:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	RERFGC1B_STOMACH	1	1	0.0336	FALSE	183	104	9	328	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFGC1B_STOMACH	1	1	0.0336	FALSE	230	193	14	283	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0336	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFGC1B_STOMACH	1	1	0.0336	FALSE	344	821	44	306	0	FALSE	ACH-000144
RERFGC1B_STOMACH	VTI1A--UBE2D1	2	3	VTI1A	6899	chr10:114224416:+	UBE2D1	28868	chr10:60128480:+	ONLY_REF_SPLICE	YES	183	107	0.03	0.04	0.0224	0.0336	{Klijn_CCL:Stomach=1},VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,UBE2D1->chr10:60094735-60130513:+,ubiquitin_conjugating_enzyme_E2_D1	RERFGC1B_STOMACH	0.03	0.04	0.056	TRUE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	ANK3--SLC24A3	2	2	ANK3	2267	chr10:62374944:-	SLC24A3	76967	chr20:19496132:+	ONLY_REF_SPLICE	YES	36	12	0.1	0.25	0.0224	0.0224	ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-,SLC24A3->chr20:19193290-19703581:+,solute_carrier_family_24_member_3	RERFGC1B_STOMACH	0.1	0.25	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	IMMP2L--LAMB1	2	2	IMMP2L	4976	chr7:111127294:-	LAMB1	30294	chr7:107605132:-	ONLY_REF_SPLICE	YES	9	316	0.31	0.01	0.0224	0.0224	IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,LAMB1->chr7:107564244-107643700:-,laminin_subunit_beta_1	RERFGC1B_STOMACH	0.01	0.31	0.0448	FALSE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	PHF20--AGO3	2	2	PHF20	9419	chr20:34435356:+	AGO3	55280	chr1:36520547:+	ONLY_REF_SPLICE	YES	47	50	0.08	0.07	0.0224	0.0224	PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+,AGO3->argonaute_3,_RISC_catalytic_component,chr1:36396319-36538101:+	RERFGC1B_STOMACH	0.07	0.08	0.0448	TRUE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0112	0.0671	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFGC1B_STOMACH	0.88	1	0.0783	FALSE	192	492	57	212	0	FALSE	ACH-000144
RERFGC1B_STOMACH	RP11-6N13.1--CTD-2374C24.1	1	5	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	19799	chr5:104315477:-	ONLY_REF_SPLICE	NO	1	1	0.86	0.86	0.0112	0.0559	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	RERFGC1B_STOMACH	0.86	0.86	0.0671	TRUE	1	1	0	17	1	FALSE	ACH-000144
RERFGC1B_STOMACH	RP11-6N13.1--CTD-2374C24.1	2	1	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	23469	chr5:104253599:-	ONLY_REF_SPLICE	YES	1	2	0.75	0.6	0.0224	0.0112	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	RERFGC1B_STOMACH	0.6	0.75	0.0336	TRUE	0	0	0	4	0	FALSE	ACH-000144
RERFGC1B_STOMACH	RP11-6N13.1--DCAF10	2	1	RP11-6N13.1	3400	chr5:104222559:-	DCAF10	20692	chr9:37842086:+	ONLY_REF_SPLICE	YES	0	10	1	0.23	0.0224	0.0112	RP11-6N13.1->chr5:103718999-104728671:-,DCAF10->DDB1_and_CUL4_associated_factor_10,chr9:37800499-37867663:+	RERFGC1B_STOMACH	0.23	1	0.0336	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	1	0.75	0.75	0.0224	0.0112	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFGC1B_STOMACH	0.75	0.75	0.0336	FALSE	467	2173	244	435	0	FALSE	ACH-000144
RERFGC1B_STOMACH	WDFY2--SERPINE3	1	5	WDFY2	1317	chr13:52158960:+	SERPINE3	28599	chr13:51935414:+	ONLY_REF_SPLICE	YES	5	2	0.55	0.75	0.0112	0.0559	{Klijn_CCL:Stomach=1},WDFY2->WD_repeat_and_FYVE_domain_containing_2,chr13:52158644-52336171:+,SERPINE3->chr13:51909909-51938871:+,serpin_family_E_member_3	RERFGC1B_STOMACH	0.55	0.75	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	CACNB4--DNAJC10	2	0	CACNB4	1750	chr2:152954844:-	DNAJC10	46991	chr2:183616799:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	CACNB4->calcium_voltage-gated_channel_auxiliary_subunit_beta_4,chr2:152689290-152955593:-,DNAJC10->DnaJ_heat_shock_protein_family_(Hsp40)_member_C10,chr2:183580999-183659191:+	RERFGC1B_STOMACH	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	LTN1--RWDD2B	2	0	LTN1	17873	chr21:30330708:-	RWDD2B	40867	chr21:30380942:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},LOCAL_REARRANGEMENT:-:[11435],LTN1->chr21:30300466-30365270:-,listerin_E3_ubiquitin_protein_ligase_1,RWDD2B->RWD_domain_containing_2B,chr21:30376705-30391699:-	RERFGC1B_STOMACH	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MED12L--KLHL3	2	0	MED12L	18793	chr3:150959656:+	KLHL3	67904	chr5:137013338:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	MED12L->chr3:150803484-151154860:+,mediator_complex_subunit_12_like,KLHL3->chr5:136953189-137071779:-,kelch_like_family_member_3	RERFGC1B_STOMACH	1	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RP11-624L4.1--RP11-265N7.1	2	0	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	RERFGC1B_STOMACH	1	1	0.0224	FALSE	0	20	1	20	0	FALSE	ACH-000144
RERFGC1B_STOMACH	SCARB1--UBC	2	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	RERFGC1B_STOMACH	1	1	0.0224	TRUE	55	66	6	101	0	FALSE	ACH-000144
RERFGC1B_STOMACH	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0224	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RERFGC1B_STOMACH	1	1	0.0224	TRUE	5	8	0	33	0	FALSE	ACH-000144
RERFGC1B_STOMACH	CORO7--ANKS3	1	3	CORO7	7741	chr16:4462357:-	ANKS3	41200	chr16:4752238:-	ONLY_REF_SPLICE	YES	18	15	0.18	0.21	0.0112	0.0336	CORO7->chr16:4404543-4475706:-,coronin_7,ANKS3->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_3,chr16:4746513-4784379:-	RERFGC1B_STOMACH	0.18	0.21	0.0448	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	MYOF--AP001372.2	1	2	MYOF	4553	chr10:95211807:-	AP001372.2	63040	chr11:74207694:+	ONLY_REF_SPLICE	YES	120	6	0.02	0.33	0.0112	0.0224	MYOF->chr10:95066186-95242074:-,myoferlin,AP001372.2->chr11:74204411-74209578:+	RERFGC1B_STOMACH	0.02	0.33	0.0336	TRUE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	79	1	0.04	0.0112	0.0224	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RERFGC1B_STOMACH	0.04	1	0.0336	TRUE	64	13	3	59	0	FALSE	ACH-000144
RERFGC1B_STOMACH	CA4--VMP1	1	1	CA4	1157	chr17:58227453:+	VMP1	14863	chr17:57808782:+	ONLY_REF_SPLICE	YES	19	42	0.1	0.05	0.0112	0.0112	CA4->carbonic_anhydrase_4,chr17:58227297-58248260:+,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	RERFGC1B_STOMACH	0.05	0.1	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	ME1--SNAP91	1	1	ME1	6828	chr6:84025029:-	SNAP91	44110	chr6:84302978:-	ONLY_REF_SPLICE	YES	229	4	0.01	0.33	0.0112	0.0112	ME1->chr6:83920108-84140797:-,malic_enzyme_1,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	RERFGC1B_STOMACH	0.01	0.33	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000144
RERFGC1B_STOMACH	MIPOL1--TTC6	1	1	MIPOL1	23226	chr14:37892154:+	TTC6	49694	chr14:38149356:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0112	0.0112	NEIGHBORS[43486],MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1,TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6	RERFGC1B_STOMACH	0.67	1	0.0224	FALSE	0	0	0	2	0	FALSE	ACH-000144
RERFGC1B_STOMACH	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0112	0.0112	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFGC1B_STOMACH	1	1	0.0224	FALSE	125	705	46	456	0	FALSE	ACH-000144
RERFGC1B_STOMACH	PAIP1--TEK	1	1	PAIP1	1940	chr5:43556921:-	TEK	18109	chr9:27157829:+	ONLY_REF_SPLICE	NO	26	0	0.07	1	0.0112	0.0112	PAIP1->chr5:43526369-43557860:-,poly(A)_binding_protein_interacting_protein_1,TEK->Oncogene{Bushman},TEK_receptor_tyrosine_kinase,chr9:27109139-27230173:+	RERFGC1B_STOMACH	0.07	1	0.0224	TRUE	0	0	0	1	0	TRUE	ACH-000144
RERFGC1B_STOMACH	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0112	0.0112	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RERFGC1B_STOMACH	1	1	0.0224	FALSE	93	270	15	244	0	FALSE	ACH-000144
RERFGC1B_STOMACH	SEPT9--SEC14L1	1	1	SEPT9	5860	chr17:75290985:+	SEC14L1	55433	chr17:75138728:+	ONLY_REF_SPLICE	NO	16	76	0.11	0.03	0.0112	0.0112	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],LOCAL_REARRANGEMENT:+:[63472],SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,SEC14L1->SEC14_like_lipid_binding_1,chr17:75082798-75213179:+	RERFGC1B_STOMACH	0.03	0.11	0.0224	TRUE	0	0	0	1	0	FALSE	ACH-000144
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFB--MYLPF	4933	1942	CBFB	1698	chr16:67063716:+	MYLPF	16324	chr16:30386143:+	ONLY_REF_SPLICE	YES	61	24	0.99	1	46.5425	18.3226	CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	64.8651	TRUE	0	0	0	2	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV19--TRAJ3	2373	44	TRAV19	1661	chr14:22476411:+	TRAJ3	4674	chr14:23012125:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	22.3891	0.4151	HGNC_GENEFAM,TRAV19->T_cell_receptor_alpha_variable_19,chr14:22475751-22476420:+,TRAJ3->T_cell_receptor_alpha_joining_3,chr14:23012122-23012183:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	22.8042	TRUE	0	1	0	1	1	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV5--TRAJ3	2315	206	TRAV5	1523	chr14:22217984:+	TRAJ3	4532	chr14:23012125:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	21.8419	1.9436	HGNC_GENEFAM,TRAV5->T_cell_receptor_alpha_variable_5,chr14:22217462-22217989:+,TRAJ3->T_cell_receptor_alpha_joining_3,chr14:23012122-23012183:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	23.7855	TRUE	0	1	0	1	1	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFB--MYLPF	103	1952	CBFB	1698	chr16:67063716:+	MYLPF	15140	chr16:30384199:+	ONLY_REF_SPLICE	YES	61	0	0.97	1	0.9718	18.417	CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	19.3888	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFB--MYLPF	11	1946	CBFB	2062	chr16:67064080:+	MYLPF	16324	chr16:30386143:+	ONLY_REF_SPLICE	YES	76	24	0.96	0.99	0.1038	18.3604	CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.99	18.4642	TRUE	0	0	0	2	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFB--MYLPF	2	1956	CBFB	2062	chr16:67064080:+	MYLPF	15140	chr16:30384199:+	ONLY_REF_SPLICE	YES	76	0	0.96	1	0.0189	18.4547	CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	18.4736	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADD3--MXI1	453	93	ADD3	3765	chr10:111768057:+	MXI1	37349	chr10:112038938:+	ONLY_REF_SPLICE	YES	65	25	0.89	0.96	4.274	0.8774	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[72040],ADD3->Oncogene{Bushman},adducin_3,chr10:111756126-111895323:+,MXI1->MAX_interactor_1,_dimerization_protein,Oncogene{Bushman},chr10:111967363-112047123:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.96	5.1514	FALSE	1	0	0	1	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	413	13	PTMA	6054	chr2:232576687:+	HMGB2	13627	chr4:174253268:-	INCL_NON_REF_SPLICE	YES	8097	3652	0.05	0.1	3.8966	0.1227	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.1	4.0193	TRUE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBFB--MYLPF	3	1519	CBFB	1698	chr16:67063716:+	MYLPF	17322	chr16:30387141:+	ONLY_REF_SPLICE	YES	61	38	0.96	0.98	0.0283	14.3317	CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,MYLPF->chr16:30382255-30389312:+,myosin_light_chain,_phosphorylatable,_fast_skeletal_muscle	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.98	14.36	TRUE	0	0	0	2	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	148	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3964	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.3964	TRUE	0	0	0	518	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	129	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2171	0.2642	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.4813	TRUE	508	994	45	981	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	81	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	181	9	0.31	0.9	0.7642	0.0094	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.9	0.7736	TRUE	519	3926	326	965	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV19--TRAC	3	307	TRAV19	1166	chr14:22475916:+	TRAC	4671	chr14:23016447:+	ONLY_REF_SPLICE	YES	2067	0	0.13	1	0.0283	2.8965	HGNC_GENEFAM,TRAV19->T_cell_receptor_alpha_variable_19,chr14:22475751-22476420:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	2.9248	TRUE	0	2	0	1	2	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV5--TRAJ3	30	195	TRAV5	1518	chr14:22217979:+	TRAJ3	4527	chr14:23012120:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.283	1.8398	HGNC_GENEFAM,TRAV5->T_cell_receptor_alpha_variable_5,chr14:22217462-22217989:+,TRAJ3->T_cell_receptor_alpha_joining_3,chr14:23012122-23012183:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.1228	TRUE	0	1	0	1	1	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	39	21	PTMA	6556	chr2:232577189:+	HMGB2	13573	chr4:174253322:-	INCL_NON_REF_SPLICE	YES	7328	4498	0.01	0.01	0.368	0.1981	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.5661	TRUE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV4--TRAC	31	46	TRAV4	1107	chr14:22204540:+	TRAC	4832	chr14:23016447:+	ONLY_REF_SPLICE	YES	17	0	0.82	1	0.2925	0.434	GTEx_FI:{Spleen=[count:3=pct:2.7],Whole_Blood=[count:1=pct:0.8],Blood=[count:1=pct:0.6]},HGNC_GENEFAM,TRAV4->T_cell_receptor_alpha_variable_4,chr14:22204434-22205264:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.7265	TRUE	5	29	1	1	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	36	16	PTMA	6060	chr2:232576693:+	HMGB2	13597	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	8640	4308	0.01	0.01	0.3397	0.151	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.4907	TRUE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTN4--DPY30	36	8	RTN4	6560	chr2:55276881:-	DPY30	36154	chr2:32095021:-	ONLY_REF_SPLICE	YES	21	1	0.68	0.98	0.3397	0.0755	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,DPY30->chr2:32092878-32264881:-,dpy-30,_histone_methyltransferase_complex_regulatory_subunit	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.68	0.98	0.4152	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1958--SNX30	29	9	KIAA1958	1272	chr9:115249398:+	SNX30	22440	chr9:115567056:+	ONLY_REF_SPLICE	YES	14	0	0.73	1	0.2736	0.0849	{Klijn_CCL:Lung=1,Colo-Rectal=1},NEIGHBORS[81441],KIAA1958->KIAA1958,chr9:115249127-115431677:+,SNX30->chr9:115513118-115643951:+,sorting_nexin_family_member_30	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	0.3585	FALSE	0	1	0	1	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	27	16	PTMA	6060	chr2:232576693:+	HMGB2	13600	chr4:174253295:-	INCL_NON_REF_SPLICE	YES	8640	4161	0	0.01	0.2547	0.151	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.4057	TRUE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTN4--DPY30	21	14	RTN4	12432	chr2:55252222:-	DPY30	36154	chr2:32095021:-	ONLY_REF_SPLICE	YES	59	1	0.37	0.97	0.1981	0.1321	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,DPY30->chr2:32092878-32264881:-,dpy-30,_histone_methyltransferase_complex_regulatory_subunit	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.97	0.3302	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	22	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	14	0.84	0.66	0.2076	0.0472	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	0.84	0.2548	FALSE	16	356	14	466	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	19	9	PTMA	6535	chr2:232577168:+	HMGB2	13652	chr4:174253243:-	INCL_NON_REF_SPLICE	YES	7561	3208	0	0.01	0.1793	0.0849	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.2642	TRUE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	16	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.151	0.066	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.217	FALSE	416	2512	207	587	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV3--TRAC	15	8	TRAV3	1222	chr14:22192181:+	TRAC	4610	chr14:23016447:+	ONLY_REF_SPLICE	YES	46	0	0.33	1	0.1415	0.0755	HGNC_GENEFAM,TRAV3->T_cell_receptor_alpha_variable_3_(gene/pseudogene),chr14:22191960-22192568:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.217	TRUE	1	20	1	2	20	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTN4--DPY30	10	18	RTN4	13795	chr2:55237223:-	DPY30	36154	chr2:32095021:-	ONLY_REF_SPLICE	YES	68	1	0.29	0.97	0.0943	0.1698	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,DPY30->chr2:32092878-32264881:-,dpy-30,_histone_methyltransferase_complex_regulatory_subunit	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.97	0.2641	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	12	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	43	18	0.33	0.54	0.1132	0.0849	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.54	0.1981	TRUE	267	562	48	632	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	9	21	PTMA	6552	chr2:232577185:+	HMGB2	13568	chr4:174253327:-	INCL_NON_REF_SPLICE	YES	7478	4459	0	0.01	0.0849	0.1981	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.283	TRUE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	10	16	PTMA	6060	chr2:232576693:+	HMGB2	13543	chr4:174253352:-	INCL_NON_REF_SPLICE	YES	8640	4715	0	0.01	0.0943	0.151	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.2453	TRUE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-662B19.2--WDR37	14	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1321	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1321	TRUE	31	42	1	25	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV19--TRAJ3	3	44	TRAV19	1664	chr14:22476414:+	TRAJ3	4677	chr14:23012128:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0.4151	HGNC_GENEFAM,TRAV19->T_cell_receptor_alpha_variable_19,chr14:22475751-22476420:+,TRAJ3->T_cell_receptor_alpha_joining_3,chr14:23012122-23012183:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4434	TRUE	0	1	0	1	1	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1227	0.0094	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1321	FALSE	499	1288	110	792	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	9	17	PTMA	6068	chr2:232576701:+	HMGB2	13567	chr4:174253328:-	INCL_NON_REF_SPLICE	NO	9068	4436	0	0.01	0.0849	0.1604	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.2453	FALSE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTN4--DPY30	11	7	RTN4	6560	chr2:55276881:-	DPY30	37259	chr2:32093561:-	ONLY_REF_SPLICE	YES	21	5	0.46	0.78	0.1038	0.066	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,DPY30->chr2:32092878-32264881:-,dpy-30,_histone_methyltransferase_complex_regulatory_subunit	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	0.78	0.1698	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	8	14	PTMA	6054	chr2:232576687:+	HMGB2	13551	chr4:174253344:-	INCL_NON_REF_SPLICE	YES	8097	4654	0	0	0.0755	0.1321	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.2076	TRUE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	11	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1038	0.0094	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1132	FALSE	462	80	0	856	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	8	13	PTMA	6054	chr2:232576687:+	HMGB2	13633	chr4:174253262:-	INCL_NON_REF_SPLICE	YES	8097	3682	0	0.01	0.0755	0.1227	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.1982	TRUE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	7	15	PTMA	6060	chr2:232576693:+	HMGB2	13633	chr4:174253262:-	INCL_NON_REF_SPLICE	YES	8640	3682	0	0.01	0.066	0.1415	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.2075	TRUE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC079610.1	10	1	IKZF2	15505	chr2:213878515:-	AC079610.1	32267	chr2:213446132:-	ONLY_REF_SPLICE	YES	147	0	0.07	1	0.0943	0.0094	NEIGHBORS_OVERLAP:-:-:[21840],IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC079610.1->chr2:213446081-213886269:-	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.1037	FALSE	0	0	0	1	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	5	21	PTMA	6551	chr2:232577184:+	HMGB2	13565	chr4:174253330:-	INCL_NON_REF_SPLICE	YES	7315	4558	0	0.01	0.0472	0.1981	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.2453	TRUE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	9	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.87	0.93	0.0849	0.0377	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	0.93	0.1226	FALSE	515	4851	409	746	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV4--TRAC	10	0	TRAV4	1072	chr14:22204505:+	TRAC	4832	chr14:23016447:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0943	0	GTEx_FI:{Spleen=[count:3=pct:2.7],Whole_Blood=[count:1=pct:0.8],Blood=[count:1=pct:0.6]},HGNC_GENEFAM,TRAV4->T_cell_receptor_alpha_variable_4,chr14:22204434-22205264:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0943	TRUE	5	29	1	1	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0755	0.0566	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1321	FALSE	499	1288	110	792	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	9	2	PTMA	6024	chr2:232576657:+	HMGB2	13600	chr4:174253295:-	INCL_NON_REF_SPLICE	YES	7464	4161	0	0	0.0849	0.0189	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1038	TRUE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	8	6	PTMA	6054	chr2:232576687:+	HMGB2	13654	chr4:174253241:-	INCL_NON_REF_SPLICE	YES	8097	3134	0	0	0.0755	0.0566	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1321	TRUE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV3--TRAC	6	12	TRAV3	1427	chr14:22192386:+	TRAC	4610	chr14:23016447:+	INCL_NON_REF_SPLICE	YES	25	0	0.42	1	0.0566	0.1132	HGNC_GENEFAM,TRAV3->T_cell_receptor_alpha_variable_3_(gene/pseudogene),chr14:22191960-22192568:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.1698	TRUE	1	20	1	2	20	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC25--UGCG	8	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0755	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0755	TRUE	50	73	10	50	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	8	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0755	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0755	TRUE	0	5	1	24	1	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKZF2--AC079610.1	7	1	IKZF2	11546	chr2:213886717:-	AC079610.1	32267	chr2:213446132:-	ONLY_REF_SPLICE	YES	268	0	0.03	1	0.066	0.0094	NEIGHBORS_OVERLAP:-:-:[21840],IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-,AC079610.1->chr2:213446081-213886269:-	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0754	FALSE	0	0	0	1	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	7	1	PTMA	6024	chr2:232576657:+	HMGB2	13633	chr4:174253262:-	INCL_NON_REF_SPLICE	YES	7464	3682	0	0	0.066	0.0094	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0754	FALSE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	3	14	PTMA	6054	chr2:232576687:+	HMGB2	12627	chr4:174254268:-	INCL_NON_REF_SPLICE	YES	8097	4902	0	0	0.0283	0.1321	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1604	TRUE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	3	14	PTMA	6054	chr2:232576687:+	HMGB2	13600	chr4:174253295:-	INCL_NON_REF_SPLICE	YES	8097	4161	0	0	0.0283	0.1321	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.1604	TRUE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	3	13	PTMA	6062	chr2:232576695:+	HMGB2	13638	chr4:174253257:-	INCL_NON_REF_SPLICE	YES	8747	3581	0	0	0.0283	0.1227	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.151	TRUE	0	0	0	4	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--KBTBD11	6	0	CPSF6	11046	chr12:69656342:+	KBTBD11	27212	chr8:1954711:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0566	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,KBTBD11->chr8:1922044-1955102:+,kelch_repeat_and_BTB_domain_containing_11	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0566	TRUE	0	1	0	4	1	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	7	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.066	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1037	FALSE	499	1288	110	792	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	5	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0472	0.0189	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.0661	FALSE	292	1546	117	613	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	38	18	0.19	0.33	0.0377	0.0472	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.33	0.0849	TRUE	267	562	48	632	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	5	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0472	TRUE	0	0	0	434	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	7	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0.066	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0943	FALSE	499	1288	110	792	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTN4--DPY30	2	11	RTN4	12432	chr2:55252222:-	DPY30	37259	chr2:32093561:-	ONLY_REF_SPLICE	YES	59	5	0.18	0.72	0.0189	0.1038	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,DPY30->chr2:32092878-32264881:-,dpy-30,_histone_methyltransferase_complex_regulatory_subunit	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.72	0.1227	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	4	2	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	YES	69	92	0.08	0.06	0.0377	0.0189	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.08	0.0566	TRUE	4	3	0	21	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	4	1	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0377	0.0094	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0471	FALSE	0	24	0	62	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAEA--CTBP1	4	1	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	2	92	0.71	0.05	0.0377	0.0094	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.71	0.0471	TRUE	3	14	2	43	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0377	TRUE	0	0	0	434	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0377	TRUE	0	0	0	434	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	4	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0377	FALSE	0	0	0	189	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	3	3	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	50	0	0.11	1	0.0283	0.0283	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0566	FALSE	272	151	14	158	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	3	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	24	0	0.17	1	0.0283	0.0189	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.0472	FALSE	164	806	69	479	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	3	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0.0189	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0472	TRUE	62	24	1	171	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0189	0.0472	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.0661	FALSE	407	2205	196	549	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MT-ATP8	3	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	FALSE	12	0	0	26	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--MYO18B	3	0	CPSF6	11046	chr12:69656342:+	MYO18B	34050	chr22:26219472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,MYO18B->chr22:26138111-26427007:+,myosin_XVIIIB	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC11--CCDC57	3	0	DNAJC11	3659	chr1:6738454:-	CCDC57	59792	chr17:80059742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	DNAJC11->DnaJ_heat_shock_protein_family_(Hsp40)_member_C11,chr1:6694228-6761984:-,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRS--MT-ATP6	3	0	FBRS	7329	chr16:30676192:+	MT-ATP6	16673	chrM:8927:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	FBRS->chr16:30669752-30682135:+,fibrosin,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	FALSE	0	0	0	1	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FUBP1--IVNS1ABP	3	0	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	1	4	0	16	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1014	chrM:14660:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	FALSE	499	1288	110	792	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	FALSE	499	1288	110	792	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	3	0	NOC4L	2218	chr12:132630210:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	1	0	10	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--HMGB2	3	0	PTMA	6047	chr2:232576680:+	HMGB2	13656	chr4:174253239:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0283	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	TRUE	0	0	0	4	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RTN4--DPY30	1	8	RTN4	9354	chr2:55255300:-	DPY30	36154	chr2:32095021:-	ONLY_REF_SPLICE	YES	37	1	0.2	0.9	0.0094	0.0755	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,DPY30->chr2:32092878-32264881:-,dpy-30,_histone_methyltransferase_complex_regulatory_subunit	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.9	0.0849	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWOX--RP11-319G9.5	3	0	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0283	0	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0283	FALSE	33	33	2	19	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	3	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	8	14	0.38	0.26	0.0189	0.0283	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.38	0.0472	FALSE	0	48	1	163	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	NO	50	0	0.07	1	0.0189	0.0189	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0378	FALSE	28	14	1	23	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMTM8--CMTM7	2	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	72	70	0.04	0.04	0.0189	0.0094	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.04	0.0283	FALSE	118	557	29	88	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	1	0.86	0.86	0.0094	0.0472	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	0.86	0.0566	FALSE	467	2173	244	435	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATL2--HNRNPLL	2	0	ATL2	6688	chr2:38570410:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	5	0	8	2	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCCIP--TIMM23	2	0	BCCIP	4322	chr10:127516207:+	TIMM23	24948	chr10:51592619:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	BCCIP->BRCA2_and_CDKN1A_interacting_protein,chr10:127512115-127542264:+,TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BFAR--ZBTB7A	2	0	BFAR	5380	chr16:14743830:+	ZBTB7A	18044	chr19:4055245:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	BFAR->bifunctional_apoptosis_regulator,chr16:14726672-14763093:+,ZBTB7A->chr19:4044362-4066943:-,zinc_finger_and_BTB_domain_containing_7A	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PHF14	2	0	C17orf76-AS1	1593	chr17:16342728:+	PHF14	37718	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	C17orf76-AS1->chr17:16342136-16381992:+,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	5	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C22orf34--ZBED4	2	0	C22orf34	1138	chr22:50051053:-	ZBED4	21292	chr22:50276982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	C22orf34->chr22:49808176-50051190:-,chromosome_22_open_reading_frame_34,ZBED4->chr22:50247490-50283726:+,zinc_finger_BED-type_containing_4	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COX7C--COQ6	2	0	COX7C	1227	chr5:85913947:+	COQ6	13373	chr14:74425674:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	COX7C->chr5:85913721-85916779:+,cytochrome_c_oxidase_subunit_7C,COQ6->chr14:74416629-74430373:+,coenzyme_Q6,_monooxygenase	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CSNK1G2--DAZAP1	2	0	CSNK1G2	1230	chr19:1941417:+	DAZAP1	20530	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	1	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIST1H2BD--CD1E	2	0	HIST1H2BD	1439	chr6:26158787:+	CD1E	9199	chr1:158326554:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	HIST1H2BD->chr6:26158349-26171577:+,histone_cluster_1,_H2bd,CD1E->CD1e_molecule,chr1:158323254-158327343:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNAS	2	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	3	0	13	2	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-316P17.2--RP5-1050E16.2	2	0	RP11-316P17.2	1338	chr9:92316903:+	RP5-1050E16.2	8236	chr9:92522698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_FI:{Lung=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},RP11-316P17.2->chr9:92316566-92334585:+,RP5-1050E16.2->chr9:92501142-92523200:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	2	7	0	5	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLTM--ALDOA	2	0	SLTM	7302	chr15:59204762:-	ALDOA	35214	chr16:30079967:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SLTM->SAFB_like_transcription_modulator,chr15:59171244-59225852:-,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG3--RPLP0	2	0	SNHG3	1105	chr1:28832596:+	RPLP0	12687	chr12:120635265:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SNHG3->chr1:28832492-28837404:+,small_nucleolar_RNA_host_gene_3,RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG8--HUWE1	2	0	SNHG8	1429	chr4:119200292:+	HUWE1	60895	chrX:53581881:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	SNHG8->chr4:119199864-119200978:+,small_nucleolar_RNA_host_gene_8,HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSHZ1--ZADH2	2	0	TSHZ1	2162	chr18:72923871:+	ZADH2	19481	chr18:72914295:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	LOCAL_INVERSION:+:-:[1407],TSHZ1->chr18:72922710-73001905:+,teashirt_zinc_finger_homeobox_1,ZADH2->chr18:72907063-72921303:-,zinc_binding_alcohol_dehydrogenase_domain_containing_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	2	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--RP11-218M22.1	2	0	ZNF738	7035	chr19:21558766:+	RP11-218M22.1	18338	chr12:753125:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,RP11-218M22.1->chr12:740057-772872:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	3	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	24436	chr10:114650725:+	ONLY_REF_SPLICE	YES	50	0	0.07	1	0.0094	0.0283	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	1	0.0377	FALSE	21	3	0	16	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	1	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	20	0	0.13	1	0.0094	0.0189	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.0283	FALSE	125	705	46	456	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	NO	0	5	1	0.29	0.0094	0.0094	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.0188	TRUE	347	1186	183	220	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FGF14-IT1--FGF14	1	1	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0094	0.0094	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0188	TRUE	71	201	23	28	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HADH--LEF1	1	1	HADH	7555	chr4:108944719:+	LEF1	21943	chr4:109010413:-	ONLY_REF_SPLICE	NO	719	3127	0	0	0.0094	0.0094	LOCAL_INVERSION:+:-:[12370],HADH->chr4:108910870-108956331:+,hydroxyacyl-CoA_dehydrogenase,LEF1->Oncogene{Bushman},chr4:108968701-109090112:-,lymphoid_enhancer_binding_factor_1	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC01036--LINC01037	1	1	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0094	0.0094	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0188	FALSE	0	26	0	50	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MSH5--PTP4A2	1	1	MSH5	7840	chr6:31715209:+	PTP4A2	31414	chr1:32385259:-	ONLY_REF_SPLICE	YES	116	533	0.02	0	0.0094	0.0094	MSH5->chr6:31707725-31732622:+,mutS_homolog_5,PTP4A2->chr1:32372022-32410457:-,protein_tyrosine_phosphatase_type_IVA,_member_2	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NHLRC3--ATP5C1	1	1	NHLRC3	2406	chr13:39613848:+	ATP5C1	15507	chr10:7839010:+	ONLY_REF_SPLICE	YES	66	597	0.03	0	0.0094	0.0094	NHLRC3->NHL_repeat_containing_3,chr13:39612443-39624246:+,ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF7--CTD-2410N18.5	1	1	TCF7	2323	chr5:133451724:+	CTD-2410N18.5	20410	chr5:133509713:-	ONLY_REF_SPLICE	NO	2813	1	0	0.67	0.0094	0.0094	LOCAL_INVERSION:+:-:[15305],TCF7->chr5:133450402-133487556:+,transcription_factor_7_(T-cell_specific,_HMG-box),CTD-2410N18.5->chr5:133502861-133561762:-	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.67	0.0188	FALSE	0	2	0	4	1	FALSE	ACH-000942
HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF738--SRSF1	1	1	ZNF738	7035	chr19:21558766:+	SRSF1	15679	chr17:56082402:-	ONLY_REF_SPLICE	YES	179	673	0.01	0	0.0094	0.0094	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	HPBALL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0188	FALSE	0	0	0	1	0	FALSE	ACH-000942
MKN7_STOMACH	MAP4--SHISA5	347	82	MAP4	1507	chr3:48130263:-	SHISA5	48619	chr3:48511242:-	ONLY_REF_SPLICE	YES	20	122	0.96	0.78	4.8157	1.138	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,SHISA5->chr3:48509197-48542259:-,shisa_family_member_5	MKN7_STOMACH	0.78	0.96	5.9537	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TOMM40--CEACAM19	123	86	TOMM40	4498	chr19:45397323:+	CEACAM19	15236	chr19:45175868:+	ONLY_REF_SPLICE	YES	351	26	0.37	0.89	1.707	1.1935	{Klijn_CCL:Stomach=1},TOMM40->chr19:45393826-45406946:+,translocase_of_outer_mitochondrial_membrane_40,CEACAM19->carcinoembryonic_antigen_related_cell_adhesion_molecule_19,chr19:45165545-45187631:+	MKN7_STOMACH	0.37	0.89	2.9005	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	MT-TA--MT-TC	120	24	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6654	0.3331	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MKN7_STOMACH	1	1	1.9985	FALSE	462	80	0	856	0	FALSE	ACH-000678
MKN7_STOMACH	LAMA3--CARM1	106	71	LAMA3	45927	chr18:21462009:+	CARM1	88991	chr19:11024553:+	ONLY_REF_SPLICE	YES	1288	92	0.12	0.66	1.4711	0.9853	{Klijn_CCL:Stomach=1},LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	MKN7_STOMACH	0.12	0.66	2.4564	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PDCD6--CCDC127	75	81	PDCD6	2152	chr5:272887:+	CCDC127	23436	chr5:206073:-	ONLY_REF_SPLICE	YES	597	102	0.21	0.6	1.0409	1.1241	{Klijn_CCL:Stomach=1},LOCAL_INVERSION:+:-:[53406],PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,CCDC127->chr5:196986-218330:-,coiled-coil_domain_containing_127	MKN7_STOMACH	0.21	0.6	2.165	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	FUT8--FNTB	72	85	FUT8	5815	chr14:65922436:+	FNTB	44544	chr14:65519956:+	ONLY_REF_SPLICE	YES	130	55	0.55	0.74	0.9992	1.1796	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,FNTB->chr14:65381203-65529368:+,farnesyltransferase,_CAAX_box,_beta	MKN7_STOMACH	0.55	0.74	2.1788	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	FYTTD1--HOXA-AS2	80	18	FYTTD1	8703	chr3:197497115:+	HOXA-AS2	29111	chr7:27161538:+	ONLY_REF_SPLICE	YES	129	1	0.43	0.99	1.1103	0.2498	FYTTD1->chr3:197464050-197514467:+,forty-two-three_domain_containing_1,HOXA-AS2->HOXA_cluster_antisense_RNA_2,chr7:27147396-27173921:+	MKN7_STOMACH	0.43	0.99	1.3601	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ERBB2--STARD3	66	41	ERBB2	2952	chr17:37849578:+	STARD3	34730	chr17:37813261:+	ONLY_REF_SPLICE	YES	85	638	0.56	0.14	0.916	0.569	LOCAL_REARRANGEMENT:+:[24430],ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+	MKN7_STOMACH	0.14	0.56	1.485	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PDCD6--CCDC127	35	95	PDCD6	2152	chr5:272887:+	CCDC127	22305	chr5:216974:-	ONLY_REF_SPLICE	YES	597	4	0.18	0.97	0.4857	1.3184	{Klijn_CCL:Stomach=1},LOCAL_INVERSION:+:-:[53406],PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,CCDC127->chr5:196986-218330:-,coiled-coil_domain_containing_127	MKN7_STOMACH	0.18	0.97	1.8041	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	SYMPK--PRKD2	51	20	SYMPK	5024	chr19:46357433:-	PRKD2	37129	chr19:47214295:-	ONLY_REF_SPLICE	YES	51	32	0.58	0.69	0.7078	0.2776	SYMPK->chr19:46318668-46366548:-,symplekin,PRKD2->chr19:47177532-47220384:-,protein_kinase_D2	MKN7_STOMACH	0.58	0.69	0.9854	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	WDR45B--RAB40B	47	31	WDR45B	4529	chr17:80588797:-	RAB40B	20861	chr17:80622432:-	ONLY_REF_SPLICE	YES	117	10	0.4	0.89	0.6523	0.4302	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[6420],WDR45B->WD_repeat_domain_45B,chr17:80572438-80606429:-,RAB40B->RAB40B,_member_RAS_oncogene_family,chr17:80612849-80656604:-	MKN7_STOMACH	0.4	0.89	1.0825	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TKT--DCP1A	43	38	TKT	1217	chr3:53289852:-	DCP1A	26793	chr3:53346409:-	ONLY_REF_SPLICE	YES	1049	12	0.07	0.87	0.5968	0.5274	LOCAL_REARRANGEMENT:-:[27379],TKT->chr3:53258723-53290068:-,transketolase,DCP1A->chr3:53317447-53381654:-,decapping_mRNA_1A	MKN7_STOMACH	0.07	0.87	1.1242	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	FUT8--FNTB	41	40	FUT8	5815	chr14:65922436:+	FNTB	46771	chr14:65527899:+	ONLY_REF_SPLICE	YES	130	79	0.38	0.51	0.569	0.5551	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,FNTB->chr14:65381203-65529368:+,farnesyltransferase,_CAAX_box,_beta	MKN7_STOMACH	0.38	0.51	1.1241	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	LAMA3--CARM1	33	44	LAMA3	44817	chr18:21456371:+	CARM1	88991	chr19:11024553:+	ONLY_REF_SPLICE	YES	1122	92	0.06	0.46	0.458	0.6106	{Klijn_CCL:Stomach=1},LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	MKN7_STOMACH	0.06	0.46	1.0686	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	NPM1P24--SET	39	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5412	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MKN7_STOMACH	1	1	0.5412	TRUE	0	0	0	434	0	FALSE	ACH-000678
MKN7_STOMACH	WDR45B--RAB40B	32	23	WDR45B	2355	chr17:80601825:-	RAB40B	20861	chr17:80622432:-	ONLY_REF_SPLICE	YES	124	10	0.31	0.85	0.4441	0.3192	GTEx&tcga_normals:1/3694=0.03%,LOCAL_REARRANGEMENT:-:[6420],WDR45B->WD_repeat_domain_45B,chr17:80572438-80606429:-,RAB40B->RAB40B,_member_RAS_oncogene_family,chr17:80612849-80656604:-	MKN7_STOMACH	0.31	0.85	0.7633	TRUE	0	2	0	1	2	TRUE	ACH-000678
MKN7_STOMACH	TOMM40--CEACAM19	11	95	TOMM40	4498	chr19:45397323:+	CEACAM19	13944	chr19:45174576:+	ONLY_REF_SPLICE	YES	351	0	0.23	1	0.1527	1.3184	{Klijn_CCL:Stomach=1},TOMM40->chr19:45393826-45406946:+,translocase_of_outer_mitochondrial_membrane_40,CEACAM19->carcinoembryonic_antigen_related_cell_adhesion_molecule_19,chr19:45165545-45187631:+	MKN7_STOMACH	0.23	1	1.4711	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TOMM40--CEACAM19	11	89	TOMM40	4498	chr19:45397323:+	CEACAM19	14530	chr19:45175162:+	ONLY_REF_SPLICE	YES	351	37	0.22	0.73	0.1527	1.2352	{Klijn_CCL:Stomach=1},TOMM40->chr19:45393826-45406946:+,translocase_of_outer_mitochondrial_membrane_40,CEACAM19->carcinoembryonic_antigen_related_cell_adhesion_molecule_19,chr19:45165545-45187631:+	MKN7_STOMACH	0.22	0.73	1.3879	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TIMM23B--LINC00843	29	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4025	0.1804	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MKN7_STOMACH	1	1	0.5829	TRUE	508	994	45	981	0	FALSE	ACH-000678
MKN7_STOMACH	TOMM40--CEACAM19	7	94	TOMM40	4498	chr19:45397323:+	CEACAM19	14386	chr19:45175018:+	ONLY_REF_SPLICE	YES	351	14	0.22	0.88	0.0971	1.3045	{Klijn_CCL:Stomach=1},TOMM40->chr19:45393826-45406946:+,translocase_of_outer_mitochondrial_membrane_40,CEACAM19->carcinoembryonic_antigen_related_cell_adhesion_molecule_19,chr19:45165545-45187631:+	MKN7_STOMACH	0.22	0.88	1.4016	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	URI1--SLC7A10	28	9	URI1	5244	chr19:30433571:+	SLC7A10	26473	chr19:33706879:-	ONLY_REF_SPLICE	YES	39	7	0.49	0.84	0.3886	0.1249	URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+,SLC7A10->chr19:33699570-33716756:-,solute_carrier_family_7_member_10	MKN7_STOMACH	0.49	0.84	0.5135	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	RBM6--DAG1	22	30	RBM6	12631	chr3:50085752:+	DAG1	41920	chr3:49547852:+	ONLY_REF_SPLICE	YES	96	283	0.35	0.16	0.3053	0.4163	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	MKN7_STOMACH	0.16	0.35	0.7216	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ZC3H7A--BCAR4	28	0	ZC3H7A	1144	chr16:11890980:-	BCAR4	32219	chr16:11914154:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3886	0	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	MKN7_STOMACH	1	1	0.3886	TRUE	0	12	0	3	12	TRUE	ACH-000678
MKN7_STOMACH	PCBP1-AS1--C2orf42	20	17	PCBP1-AS1	5481	chr2:70310639:-	C2orf42	42422	chr2:70410067:-	ONLY_REF_SPLICE	YES	12	2	0.76	0.95	0.2776	0.2359	LOCAL_REARRANGEMENT:-:[61034],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42	MKN7_STOMACH	0.76	0.95	0.5135	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	LAMA3--CARM1	15	33	LAMA3	45927	chr18:21462009:+	CARM1	90169	chr19:11027083:+	ONLY_REF_SPLICE	YES	1288	129	0.04	0.27	0.2082	0.458	{Klijn_CCL:Stomach=1},LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	MKN7_STOMACH	0.04	0.27	0.6662	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	STX8--USP43	20	10	STX8	4345	chr17:9471688:-	USP43	37472	chr17:9631271:+	ONLY_REF_SPLICE	YES	20	4	0.6	0.88	0.2776	0.1388	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[68107],STX8->chr17:9153788-9479908:-,syntaxin_8,USP43->chr17:9548015-9633008:+,ubiquitin_specific_peptidase_43	MKN7_STOMACH	0.6	0.88	0.4164	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	AIFM1--ZNF280C	20	4	AIFM1	16183	chrX:129263945:-	ZNF280C	31365	chrX:129354454:-	ONLY_REF_SPLICE	YES	105	5	0.19	0.83	0.2776	0.0555	LOCAL_REARRANGEMENT:-:[36824],AIFM1->Oncogene{Bushman},apoptosis_inducing_factor,_mitochondria_associated_1,chrX:129263337-129299861:-,ZNF280C->chrX:129336685-129402873:-,zinc_finger_protein_280C	MKN7_STOMACH	0.19	0.83	0.3331	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PDCD6--CCDC127	5	63	PDCD6	1201	chr5:271936:+	CCDC127	23436	chr5:206073:-	ONLY_REF_SPLICE	YES	657	102	0.09	0.4	0.0694	0.8743	{Klijn_CCL:Stomach=1},LOCAL_INVERSION:+:-:[53406],PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,CCDC127->chr5:196986-218330:-,coiled-coil_domain_containing_127	MKN7_STOMACH	0.09	0.4	0.9437	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	LAMA3--CARM1	13	24	LAMA3	45927	chr18:21462009:+	CARM1	90458	chr19:11027372:+	ONLY_REF_SPLICE	YES	1288	174	0.03	0.18	0.1804	0.3331	{Klijn_CCL:Stomach=1},LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	MKN7_STOMACH	0.03	0.18	0.5135	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	FUT8--FNTB	4	58	FUT8	5815	chr14:65922436:+	FNTB	45656	chr14:65521293:+	ONLY_REF_SPLICE	YES	130	73	0.32	0.46	0.0555	0.8049	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,FNTB->chr14:65381203-65529368:+,farnesyltransferase,_CAAX_box,_beta	MKN7_STOMACH	0.32	0.46	0.8604	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PCBP1-AS1--C2orf42	16	8	PCBP1-AS1	4300	chr2:70312679:-	C2orf42	42422	chr2:70410067:-	ONLY_REF_SPLICE	YES	20	2	0.55	0.92	0.2221	0.111	LOCAL_REARRANGEMENT:-:[61034],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42	MKN7_STOMACH	0.55	0.92	0.3331	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TTC39C--CABLES1	16	8	TTC39C	11238	chr18:21663045:+	CABLES1	42586	chr18:20832924:+	ONLY_REF_SPLICE	YES	12	35	0.67	0.41	0.2221	0.111	{Klijn_CCL:Stomach=1},TTC39C->chr18:21572737-21715574:+,tetratricopeptide_repeat_domain_39C,CABLES1->Cdk5_and_Abl_enzyme_substrate_1,chr18:20714528-20840431:+	MKN7_STOMACH	0.41	0.67	0.3331	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	LAMA3--CARM1	15	9	LAMA3	44817	chr18:21456371:+	CARM1	92149	chr19:11030271:+	ONLY_REF_SPLICE	YES	1122	161	0.02	0.13	0.2082	0.1249	{Klijn_CCL:Stomach=1},LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	MKN7_STOMACH	0.02	0.13	0.3331	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	PIR--ITGB4	17	0	PIR	9674	chrX:15444029:-	ITGB4	31040	chr17:73737063:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2359	0	PIR->chrX:15402921-15511687:-,pirin,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	MKN7_STOMACH	1	1	0.2359	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	MT-TA--MT-TC	11	23	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1527	0.3192	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MKN7_STOMACH	1	1	0.4719	FALSE	462	80	0	856	0	FALSE	ACH-000678
MKN7_STOMACH	VPS8--RP11-433C9.2	15	7	VPS8	32789	chr3:184612713:+	RP11-433C9.2	68539	chr3:184157032:+	ONLY_REF_SPLICE	YES	18	0	0.55	1	0.2082	0.0971	VPS8->VPS8,_CORVET_complex_subunit,chr3:184529931-184770402:+,RP11-433C9.2->chr3:184119325-184157436:+	MKN7_STOMACH	0.55	1	0.3053	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TIMM23--RP11-464F9.1	16	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	120	3	0.12	0.85	0.2221	0.0139	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MKN7_STOMACH	0.12	0.85	0.236	TRUE	519	3926	326	965	0	FALSE	ACH-000678
MKN7_STOMACH	MT-ND6--MT-TE	15	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2082	0.0416	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MKN7_STOMACH	1	1	0.2498	FALSE	499	1288	110	792	0	FALSE	ACH-000678
MKN7_STOMACH	MT-ND6--MT-TE	14	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.8	1	0.1943	0.0833	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MKN7_STOMACH	0.8	1	0.2776	FALSE	499	1288	110	792	0	FALSE	ACH-000678
MKN7_STOMACH	PRPF8--FAM182B	12	12	PRPF8	12802	chr17:1576375:-	FAM182B	36158	chr20:25829584:-	ONLY_REF_SPLICE	YES	78	1	0.24	0.96	0.1665	0.1665	PRPF8->chr17:1553923-1588176:-,pre-mRNA_processing_factor_8,FAM182B->chr20:25744102-25848861:-,family_with_sequence_similarity_182_member_B	MKN7_STOMACH	0.24	0.96	0.333	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	FUT8--FNTB	4	43	FUT8	3623	chr14:65879932:+	FNTB	44544	chr14:65519956:+	ONLY_REF_SPLICE	YES	169	55	0.22	0.46	0.0555	0.5968	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,FNTB->chr14:65381203-65529368:+,farnesyltransferase,_CAAX_box,_beta	MKN7_STOMACH	0.22	0.46	0.6523	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	FYTTD1--HOXA-AS2	10	19	FYTTD1	9739	chr3:197500309:+	HOXA-AS2	28178	chr7:27160605:+	INCL_NON_REF_SPLICE	YES	140	1	0.17	0.97	0.1388	0.2637	FYTTD1->chr3:197464050-197514467:+,forty-two-three_domain_containing_1,HOXA-AS2->HOXA_cluster_antisense_RNA_2,chr7:27147396-27173921:+	MKN7_STOMACH	0.17	0.97	0.4025	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	MT-TA--MT-TC	8	26	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.111	0.3608	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MKN7_STOMACH	1	1	0.4718	FALSE	462	80	0	856	0	FALSE	ACH-000678
MKN7_STOMACH	USP43--PRPF8	13	5	USP43	17389	chr17:9615449:+	PRPF8	36070	chr17:1565447:-	ONLY_REF_SPLICE	YES	4	78	0.82	0.19	0.1804	0.0694	USP43->chr17:9548015-9633008:+,ubiquitin_specific_peptidase_43,PRPF8->chr17:1553923-1588176:-,pre-mRNA_processing_factor_8	MKN7_STOMACH	0.19	0.82	0.2498	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	EHMT1--EXD3	12	7	EHMT1	14080	chr9:140657272:+	EXD3	52338	chr9:140289856:-	ONLY_REF_SPLICE	YES	54	1	0.26	0.95	0.1665	0.0971	EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1,EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3	MKN7_STOMACH	0.26	0.95	0.2636	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PGAP3--CDK12	10	13	PGAP3	2566	chr17:37844087:-	CDK12	18166	chr17:37646810:+	ONLY_REF_SPLICE	YES	268	291	0.08	0.07	0.1388	0.1804	PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	MKN7_STOMACH	0.07	0.08	0.3192	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	RBM6--DAG1	5	33	RBM6	12631	chr3:50085752:+	DAG1	39347	chr3:49526059:+	ONLY_REF_SPLICE	YES	96	280	0.28	0.12	0.0694	0.458	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	MKN7_STOMACH	0.12	0.28	0.5274	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	MT-CO3--MT-ATP6	4	36	MT-CO3	1666	chrM:9872:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.89	0.0555	0.4996	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MKN7_STOMACH	0.89	1	0.5551	FALSE	189	492	56	216	0	FALSE	ACH-000678
MKN7_STOMACH	RBM6--DAG1	5	32	RBM6	12660	chr3:50085781:+	DAG1	41920	chr3:49547852:+	INCL_NON_REF_SPLICE	YES	112	283	0.25	0.12	0.0694	0.4441	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	MKN7_STOMACH	0.12	0.25	0.5135	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	LYL1--CACNA1A	10	11	LYL1	1631	chr19:13213345:-	CACNA1A	47923	chr19:13346544:-	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.1388	0.1527	LYL1->Oncogene{Bushman},chr19:13209847-13213975:-,lymphoblastic_leukemia_associated_hematopoiesis_regulator_1,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	MKN7_STOMACH	0.91	1	0.2915	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	MT-CO3--MT-ATP6	4	35	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	6	5	0.87	0.89	0.0555	0.4857	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MKN7_STOMACH	0.87	0.89	0.5412	FALSE	189	492	56	216	0	FALSE	ACH-000678
MKN7_STOMACH	LAMA3--CARM1	9	13	LAMA3	45927	chr18:21462009:+	CARM1	92149	chr19:11030271:+	ONLY_REF_SPLICE	YES	1288	161	0.02	0.12	0.1249	0.1804	{Klijn_CCL:Stomach=1},LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	MKN7_STOMACH	0.02	0.12	0.3053	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	VPS13B--OSR2	9	10	VPS13B	5103	chr8:100115348:+	OSR2	83665	chr8:99961067:+	ONLY_REF_SPLICE	YES	11	146	0.63	0.12	0.1249	0.1388	LOCAL_REARRANGEMENT:+:[61162],VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast),OSR2->chr8:99956631-99964332:+,odd-skipped_related_transciption_factor_2	MKN7_STOMACH	0.12	0.63	0.2637	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	NRIP1--AF127936.7	10	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.44	1	0.1388	0.0555	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MKN7_STOMACH	0.44	1	0.1943	FALSE	125	705	46	456	0	FALSE	ACH-000678
MKN7_STOMACH	PCBP1-AS1--C2orf42	7	15	PCBP1-AS1	5450	chr2:70310670:-	C2orf42	42422	chr2:70410067:-	ONLY_REF_SPLICE	YES	11	2	0.67	0.92	0.0971	0.2082	LOCAL_REARRANGEMENT:-:[61034],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42	MKN7_STOMACH	0.67	0.92	0.3053	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	RBM6--DAG1	2	35	RBM6	12631	chr3:50085752:+	DAG1	38185	chr3:49524687:+	ONLY_REF_SPLICE	YES	96	280	0.28	0.12	0.0278	0.4857	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	MKN7_STOMACH	0.12	0.28	0.5135	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	MT-CO3--MT-ATP6	5	21	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.9	0.0694	0.2914	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MKN7_STOMACH	0.9	1	0.3608	FALSE	189	492	56	216	0	FALSE	ACH-000678
MKN7_STOMACH	PSD3--LY6K	10	0	PSD3	3423	chr8:18871073:-	LY6K	46876	chr8:143783018:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1388	0	PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,LY6K->chr8:143781529-143786545:+,lymphocyte_antigen_6_complex,_locus_K	MKN7_STOMACH	1	1	0.1388	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	RBM6--DAG1	1	36	RBM6	12631	chr3:50085752:+	DAG1	38159	chr3:49524661:+	ONLY_REF_SPLICE	YES	96	280	0.28	0.12	0.0139	0.4996	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	MKN7_STOMACH	0.12	0.28	0.5135	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	SYTL1--WDTC1	9	4	SYTL1	7182	chr1:27676256:+	WDTC1	20174	chr1:27614165:+	ONLY_REF_SPLICE	YES	2	37	0.87	0.26	0.1249	0.0555	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[33403],SYTL1->chr1:27668513-27680421:+,synaptotagmin_like_1,WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+	MKN7_STOMACH	0.26	0.87	0.1804	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	CEP70--PIK3CB	7	11	CEP70	6826	chr3:138289160:-	PIK3CB	47750	chr3:138384045:-	ONLY_REF_SPLICE	YES	34	38	0.35	0.32	0.0971	0.1527	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:-:[59480],CEP70->centrosomal_protein_70,chr3:138213186-138313380:-,PIK3CB->ArcherDX_panel,FoundationOne_panel,chr3:138372860-138553780:-,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_beta	MKN7_STOMACH	0.32	0.35	0.2498	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PIR--AP1S2	9	3	PIR	7115	chrX:15473971:-	AP1S2	18757	chrX:15870647:-	ONLY_REF_SPLICE	YES	70	0	0.15	1	0.1249	0.0416	PIR->chrX:15402921-15511687:-,pirin,AP1S2->adaptor_related_protein_complex_1_sigma_2_subunit,chrX:15843929-15873054:-	MKN7_STOMACH	0.15	1	0.1665	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	CCND1--MT-ND1	9	2	CCND1	1290	chr11:69456144:+	MT-ND1	12240	chrM:3322:+	INCL_NON_REF_SPLICE	YES	1200	0	0.01	1	0.1249	0.0278	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	MKN7_STOMACH	0.01	1	0.1527	FALSE	0	0	0	5	0	FALSE	ACH-000678
MKN7_STOMACH	CMPK1--MYH11	8	6	CMPK1	4045	chr1:47834287:+	MYH11	16668	chr16:15892544:-	ONLY_REF_SPLICE	YES	207	0	0.06	1	0.111	0.0833	CMPK1->chr1:47799469-47844511:+,cytidine/uridine_monophosphate_kinase_1,MYH11->Oncogene{Bushman},chr16:15797029-15950890:-,myosin,_heavy_chain_11,_smooth_muscle	MKN7_STOMACH	0.06	1	0.1943	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	NAV1--PKP1	9	2	NAV1	4638	chr1:201618553:+	PKP1	49346	chr1:201263070:+	ONLY_REF_SPLICE	YES	12	1	0.48	0.92	0.1249	0.0278	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,PKP1->chr1:201252580-201302121:+,plakophilin_1	MKN7_STOMACH	0.48	0.92	0.1527	TRUE	0	0	0	2	0	TRUE	ACH-000678
MKN7_STOMACH	NRIP1--AF127936.7	9	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.1249	0.0139	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MKN7_STOMACH	0.91	1	0.1388	FALSE	292	1546	117	613	0	FALSE	ACH-000678
MKN7_STOMACH	PRPF8--FAM182B	6	12	PRPF8	12802	chr17:1576375:-	FAM182B	32483	chr20:25840504:-	INCL_NON_REF_SPLICE	YES	78	4	0.19	0.82	0.0833	0.1665	PRPF8->chr17:1553923-1588176:-,pre-mRNA_processing_factor_8,FAM182B->chr20:25744102-25848861:-,family_with_sequence_similarity_182_member_B	MKN7_STOMACH	0.19	0.82	0.2498	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ZNF654--HMGB2	9	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1249	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MKN7_STOMACH	1	1	0.1249	TRUE	0	0	0	518	0	FALSE	ACH-000678
MKN7_STOMACH	RAB5B--CDK2	8	1	RAB5B	1227	chr12:56367923:+	CDK2	14762	chr12:56360811:+	ONLY_REF_SPLICE	YES	0	529	1	0.02	0.111	0.0139	LOCAL_REARRANGEMENT:+:[1129],RAB5B->RAB5B,_member_RAS_oncogene_family,chr12:56367697-56388490:+,CDK2->Oncogene{Bushman},chr12:56360553-56366568:+,cyclin-dependent_kinase_2	MKN7_STOMACH	0.02	1	0.1249	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	PRPF8--FAM182B	7	4	PRPF8	12802	chr17:1576375:-	FAM182B	37402	chr20:25767624:-	ONLY_REF_SPLICE	YES	78	2	0.12	0.85	0.0971	0.0555	PRPF8->chr17:1553923-1588176:-,pre-mRNA_processing_factor_8,FAM182B->chr20:25744102-25848861:-,family_with_sequence_similarity_182_member_B	MKN7_STOMACH	0.12	0.85	0.1526	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PRPF8--FAM182B	7	4	PRPF8	12802	chr17:1576375:-	FAM182B	39814	chr20:25755948:-	ONLY_REF_SPLICE	YES	78	3	0.12	0.79	0.0971	0.0555	PRPF8->chr17:1553923-1588176:-,pre-mRNA_processing_factor_8,FAM182B->chr20:25744102-25848861:-,family_with_sequence_similarity_182_member_B	MKN7_STOMACH	0.12	0.79	0.1526	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	MT-CO3--MT-ATP6	3	19	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.92	0.0416	0.2637	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MKN7_STOMACH	0.92	1	0.3053	FALSE	189	492	56	216	0	FALSE	ACH-000678
MKN7_STOMACH	MT-TA--MT-TC	7	3	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0971	0.0416	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MKN7_STOMACH	1	1	0.1387	FALSE	462	80	0	856	0	FALSE	ACH-000678
MKN7_STOMACH	RP11-476K15.1--CTD-2015H3.2	7	3	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0971	0.0416	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	MKN7_STOMACH	1	1	0.1387	FALSE	0	46	0	73	0	FALSE	ACH-000678
MKN7_STOMACH	POLR2L--MT-ND4L	7	1	POLR2L	2292	chr11:840321:-	MT-ND4L	7144	chrM:10471:+	INCL_NON_REF_SPLICE	YES	220	0	0.04	1	0.0971	0.0139	POLR2L->chr11:837356-842545:-,polymerase_(RNA)_II_subunit_L,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MKN7_STOMACH	0.04	1	0.111	FALSE	0	0	0	4	0	FALSE	ACH-000678
MKN7_STOMACH	MT-CO3--MT-ATP6	7	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0971	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MKN7_STOMACH	1	1	0.0971	FALSE	189	492	56	216	0	FALSE	ACH-000678
MKN7_STOMACH	NRIP1--AF127936.7	5	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.37	1	0.0694	0.111	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MKN7_STOMACH	0.37	1	0.1804	FALSE	164	806	69	479	0	FALSE	ACH-000678
MKN7_STOMACH	RP11-123O10.4--GRIP1	6	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0833	0.0555	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MKN7_STOMACH	1	1	0.1388	FALSE	416	2512	207	587	0	FALSE	ACH-000678
MKN7_STOMACH	ZC3H7A--BCAR4	7	0	ZC3H7A	1144	chr16:11890980:-	BCAR4	31097	chr16:11915612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0971	0	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	MKN7_STOMACH	1	1	0.0971	TRUE	0	7	0	3	7	TRUE	ACH-000678
MKN7_STOMACH	C15orf57--CBX3	6	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	20	33	0.31	0.21	0.0833	0.0416	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MKN7_STOMACH	0.21	0.31	0.1249	TRUE	267	562	48	632	0	FALSE	ACH-000678
MKN7_STOMACH	SMOX--ATRN	6	3	SMOX	11810	chr20:4164301:+	ATRN	18294	chr20:3515900:+	ONLY_REF_SPLICE	YES	80	42	0.1	0.18	0.0833	0.0416	SMOX->chr20:4101627-4168394:+,spermine_oxidase,ATRN->attractin,chr20:3451687-3631769:+	MKN7_STOMACH	0.1	0.18	0.1249	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	IGFBP4--NPM1	6	2	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	3226	0	0	1	0.0833	0.0278	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	MKN7_STOMACH	0	1	0.1111	TRUE	0	0	0	38	0	FALSE	ACH-000678
MKN7_STOMACH	MT-ND6--MT-TE	4	10	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.74	1	0.0555	0.1388	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MKN7_STOMACH	0.74	1	0.1943	FALSE	499	1288	110	792	0	FALSE	ACH-000678
MKN7_STOMACH	RBM6--DAG1	4	10	RBM6	3185	chr3:50000118:+	DAG1	41920	chr3:49547852:+	ONLY_REF_SPLICE	YES	76	283	0.16	0.05	0.0555	0.1388	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	MKN7_STOMACH	0.05	0.16	0.1943	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ANKHD1--CYSTM1	6	1	ANKHD1	1460	chr5:139781858:+	CYSTM1	47050	chr5:139622890:+	ONLY_REF_SPLICE	YES	28	133	0.2	0.05	0.0833	0.0139	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,CYSTM1->chr5:139554227-139661637:+,cysteine_rich_transmembrane_module_containing_1	MKN7_STOMACH	0.05	0.2	0.0972	TRUE	1	2	1	5	0	TRUE	ACH-000678
MKN7_STOMACH	MT-ND6--MT-TE	4	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0.1249	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MKN7_STOMACH	1	1	0.1804	FALSE	499	1288	110	792	0	FALSE	ACH-000678
MKN7_STOMACH	NCOA3--EYA2	6	1	NCOA3	23198	chr20:46282288:+	EYA2	43616	chr20:45771698:+	INCL_NON_REF_SPLICE	YES	41	0	0.15	1	0.0833	0.0139	YOSHIHARA_TCGA_num_samples[LUAD:1|LUSC:1|OV:1],NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,EYA2->EYA_transcriptional_coactivator_and_phosphatase_2,chr20:45523263-45817492:+	MKN7_STOMACH	0.15	1	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PCBP1-AS1--C2orf42	2	17	PCBP1-AS1	7683	chr2:70304433:-	C2orf42	42422	chr2:70410067:-	ONLY_REF_SPLICE	YES	12	2	0.61	0.9	0.0278	0.2359	LOCAL_REARRANGEMENT:-:[61034],PCBP1-AS1->PCBP1_antisense_RNA_1,chr2:70189395-70315978:-,C2orf42->chr2:70377012-70475747:-,chromosome_2_open_reading_frame_42	MKN7_STOMACH	0.61	0.9	0.2637	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PSD3--PSCA	6	1	PSD3	3423	chr8:18871073:-	PSCA	47519	chr8:143762745:+	ONLY_REF_SPLICE	YES	0	3	1	0.7	0.0833	0.0139	PSD3->chr8:18384811-18942240:-,pleckstrin_and_Sec7_domain_containing_3,PSCA->Oncogene{Bushman},chr8:143751726-143764142:+,prostate_stem_cell_antigen	MKN7_STOMACH	0.7	1	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	RP11-680G10.1--GSE1	5	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	11	1	0.48	0.0694	0.0694	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MKN7_STOMACH	0.48	1	0.1388	TRUE	458	1351	185	561	0	FALSE	ACH-000678
MKN7_STOMACH	RP11-680G10.1--GSE1	5	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	15	1	0.4	0.0694	0.0694	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MKN7_STOMACH	0.4	1	0.1388	TRUE	465	1949	224	605	0	FALSE	ACH-000678
MKN7_STOMACH	CALM3--MT-ND4L	4	7	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	749	0	0.01	1	0.0555	0.0971	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MKN7_STOMACH	0.01	1	0.1526	FALSE	1	1	0	107	0	FALSE	ACH-000678
MKN7_STOMACH	CEP70--PIK3CB	4	7	CEP70	6110	chr3:138289876:-	PIK3CB	47750	chr3:138384045:-	ONLY_REF_SPLICE	YES	35	38	0.24	0.22	0.0555	0.0971	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:-:[59480],CEP70->centrosomal_protein_70,chr3:138213186-138313380:-,PIK3CB->ArcherDX_panel,FoundationOne_panel,chr3:138372860-138553780:-,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_beta	MKN7_STOMACH	0.22	0.24	0.1526	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ERBB2--STARD3	1	19	ERBB2	2952	chr17:37849578:+	STARD3	35497	chr17:37814028:+	ONLY_REF_SPLICE	NO	85	651	0.19	0.03	0.0139	0.2637	LOCAL_REARRANGEMENT:+:[24430],ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+	MKN7_STOMACH	0.03	0.19	0.2776	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	MT-ND6--MT-TE	5	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0694	0.0416	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MKN7_STOMACH	1	1	0.111	FALSE	499	1288	110	792	0	FALSE	ACH-000678
MKN7_STOMACH	MT-CO3--MT-ATP6	4	6	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0.0833	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MKN7_STOMACH	1	1	0.1388	FALSE	189	492	56	216	0	FALSE	ACH-000678
MKN7_STOMACH	ELMSAN1--RP5-1021I20.2	5	1	ELMSAN1	2618	chr14:74253805:-	RP5-1021I20.2	28768	chr14:74290195:-	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0694	0.0139	LOCAL_REARRANGEMENT:-:[32274],ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-,RP5-1021I20.2->chr14:74289262-74296838:-	MKN7_STOMACH	0.67	1	0.0833	TRUE	0	4	0	1	4	TRUE	ACH-000678
MKN7_STOMACH	LY6E--MT-CO3	4	4	LY6E	4710	chr8:144103250:+	MT-CO3	9746	chrM:9243:+	INCL_NON_REF_SPLICE	YES	2560	0	0	1	0.0555	0.0555	LY6E->Oncogene{Bushman},chr8:144099399-144105249:+,lymphocyte_antigen_6_complex,_locus_E,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MKN7_STOMACH	0	1	0.111	FALSE	0	1	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	NUDCD1--CCSER1	4	4	NUDCD1	3778	chr8:110334538:-	CCSER1	52526	chr4:92519723:+	ONLY_REF_SPLICE	YES	142	0	0.05	1	0.0555	0.0555	NUDCD1->NudC_domain_containing_1,chr8:110253148-110346614:-,CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1	MKN7_STOMACH	0.05	1	0.111	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PAWR--ASTN2	5	0	PAWR	2369	chr12:80083509:-	ASTN2	29303	chr9:120053792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0694	0	{Klijn_CCL:Stomach=1},PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,ASTN2->Oncogene{Bushman},astrotactin_2,chr9:119187504-120177348:-	MKN7_STOMACH	1	1	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	FUT8--FNTB	4	3	FUT8	2402	chr14:65878711:+	FNTB	44544	chr14:65519956:+	ONLY_REF_SPLICE	YES	18	55	0.28	0.11	0.0555	0.0416	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,FNTB->chr14:65381203-65529368:+,farnesyltransferase,_CAAX_box,_beta	MKN7_STOMACH	0.11	0.28	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	IGFBP4--NPM1	4	3	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	3361	1	0	0.88	0.0555	0.0416	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	MKN7_STOMACH	0	0.88	0.0971	FALSE	0	0	0	38	0	FALSE	ACH-000678
MKN7_STOMACH	LAMA3--CARM1	1	15	LAMA3	43703	chr18:21453179:+	CARM1	88991	chr19:11024553:+	ONLY_REF_SPLICE	NO	1114	92	0.01	0.15	0.0139	0.2082	{Klijn_CCL:Stomach=1},LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3,CARM1->chr19:10982189-11033453:+,coactivator_associated_arginine_methyltransferase_1	MKN7_STOMACH	0.01	0.15	0.2221	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	LYL1--CACNA1A	1	14	LYL1	1631	chr19:13213345:-	CACNA1A	47035	chr19:13347432:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.0139	0.1943	LYL1->Oncogene{Bushman},chr19:13209847-13213975:-,lymphoblastic_leukemia_associated_hematopoiesis_regulator_1,CACNA1A->calcium_voltage-gated_channel_subunit_alpha1_A,chr19:13317256-13734804:-	MKN7_STOMACH	0.88	1	0.2082	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	DTNB--AC009498.1	4	1	DTNB	6145	chr2:25861883:-	AC009498.1	39724	chr2:205093206:-	ONLY_REF_SPLICE	YES	443	0	0.01	1	0.0555	0.0139	DTNB->chr2:25600067-25896503:-,dystrobrevin_beta,AC009498.1->chr2:205092860-205099708:-	MKN7_STOMACH	0.01	1	0.0694	FALSE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	FYTTD1--HOXA-AS2	4	1	FYTTD1	8703	chr3:197497115:+	HOXA-AS2	30652	chr7:27163079:+	ONLY_REF_SPLICE	YES	129	5	0.04	0.5	0.0555	0.0139	FYTTD1->chr3:197464050-197514467:+,forty-two-three_domain_containing_1,HOXA-AS2->HOXA_cluster_antisense_RNA_2,chr7:27147396-27173921:+	MKN7_STOMACH	0.04	0.5	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TANC1--DAPL1	3	5	TANC1	2259	chr2:159857701:+	DAPL1	40745	chr2:159660794:+	ONLY_REF_SPLICE	YES	21	1	0.28	0.89	0.0416	0.0694	GTEx&tcga_normals:1/3694=0.03%,TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,DAPL1->chr2:159651829-159719293:+,death_associated_protein_like_1	MKN7_STOMACH	0.28	0.89	0.111	TRUE	0	1	0	1	1	TRUE	ACH-000678
MKN7_STOMACH	GLTPD1--PITHD1	3	4	GLTPD1	1347	chr1:1260482:+	PITHD1	10923	chr1:24112165:+	ONLY_REF_SPLICE	YES	97	39	0.07	0.15	0.0416	0.0555	GLTPD1->chr1:1260136-1264277:+,PITHD1->PITH_domain_containing_1,chr1:24104895-24114722:+	MKN7_STOMACH	0.07	0.15	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	MAP4--RP11-24C3.2	3	4	MAP4	1507	chr3:48130263:-	RP11-24C3.2	42316	chr3:48482272:-	ONLY_REF_SPLICE	YES	20	1	0.26	0.88	0.0416	0.0555	MAP4->Oncogene{Bushman},chr3:47892182-48130769:-,microtubule_associated_protein_4,RP11-24C3.2->chr3:48481762-48488060:-	MKN7_STOMACH	0.26	0.88	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MKN7_STOMACH	1	1	0.0555	FALSE	499	1288	110	792	0	FALSE	ACH-000678
MKN7_STOMACH	PAWR--ASTN2	4	0	PAWR	2369	chr12:80083509:-	ASTN2	30491	chr9:119977021:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0555	0	{Klijn_CCL:Stomach=1},PAWR->Oncogene{Bushman},chr12:79968759-80084877:-,pro-apoptotic_WT1_regulator,ASTN2->Oncogene{Bushman},astrotactin_2,chr9:119187504-120177348:-	MKN7_STOMACH	1	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PRPF8--FAM182B	3	4	PRPF8	12802	chr17:1576375:-	FAM182B	39790	chr20:25755972:-	ONLY_REF_SPLICE	YES	78	2	0.08	0.78	0.0416	0.0555	PRPF8->chr17:1553923-1588176:-,pre-mRNA_processing_factor_8,FAM182B->chr20:25744102-25848861:-,family_with_sequence_similarity_182_member_B	MKN7_STOMACH	0.08	0.78	0.0971	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	SLC1A5--MT-ND4L	4	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0555	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MKN7_STOMACH	1	1	0.0555	FALSE	0	0	0	189	0	FALSE	ACH-000678
MKN7_STOMACH	SYMPK--PRKD2	1	11	SYMPK	4808	chr19:46357649:-	PRKD2	37129	chr19:47214295:-	ONLY_REF_SPLICE	YES	82	32	0.13	0.27	0.0139	0.1527	SYMPK->chr19:46318668-46366548:-,symplekin,PRKD2->chr19:47177532-47220384:-,protein_kinase_D2	MKN7_STOMACH	0.13	0.27	0.1666	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	URI1--SLC7A10	3	3	URI1	5244	chr19:30433571:+	SLC7A10	27678	chr19:33703908:-	ONLY_REF_SPLICE	YES	39	82	0.13	0.07	0.0416	0.0416	URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+,SLC7A10->chr19:33699570-33716756:-,solute_carrier_family_7_member_10	MKN7_STOMACH	0.07	0.13	0.0832	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	MT-CO3--MT-ATP6	3	2	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	5	0	0.5	1	0.0416	0.0278	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MKN7_STOMACH	0.5	1	0.0694	FALSE	189	492	56	216	0	FALSE	ACH-000678
MKN7_STOMACH	TM9SF4--TLDC2	3	2	TM9SF4	17397	chr20:30749168:+	TLDC2	30527	chr20:35521265:+	ONLY_REF_SPLICE	YES	131	0	0.04	1	0.0416	0.0278	TM9SF4->chr20:30697309-30755061:+,transmembrane_9_superfamily_member_4,TLDC2->TBC/LysM-associated_domain_containing_2,chr20:35504524-35522638:+	MKN7_STOMACH	0.04	1	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PVT1--SNTB1	3	1	PVT1	1202	chr8:128806980:+	SNTB1	39476	chr8:121554240:-	ONLY_REF_SPLICE	YES	127	11	0.03	0.27	0.0416	0.0139	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	MKN7_STOMACH	0.03	0.27	0.0555	TRUE	0	0	0	25	0	FALSE	ACH-000678
MKN7_STOMACH	DOCK4--IMMP2L	3	0	DOCK4	13779	chr7:111575595:-	IMMP2L	72389	chr7:110603621:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2	MKN7_STOMACH	1	1	0.0416	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	FYTTD1--HOXA-AS2	2	4	FYTTD1	7590	chr3:197495458:+	HOXA-AS2	29111	chr7:27161538:+	ONLY_REF_SPLICE	YES	208	1	0.03	0.86	0.0278	0.0555	FYTTD1->chr3:197464050-197514467:+,forty-two-three_domain_containing_1,HOXA-AS2->HOXA_cluster_antisense_RNA_2,chr7:27147396-27173921:+	MKN7_STOMACH	0.03	0.86	0.0833	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MKN7_STOMACH	1	1	0.0416	FALSE	189	492	56	216	0	FALSE	ACH-000678
MKN7_STOMACH	IRF2--RUSC2	2	3	IRF2	11115	chr4:185311857:-	RUSC2	18993	chr9:35546427:+	ONLY_REF_SPLICE	YES	42	1	0.11	0.83	0.0278	0.0416	IRF2->ArcherDX_panel,FoundationOne_panel,chr4:185308867-185395734:-,interferon_regulatory_factor_2,RUSC2->RUN_and_SH3_domain_containing_2,chr9:35490124-35561895:+	MKN7_STOMACH	0.11	0.83	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PGAP3--CDK12	2	3	PGAP3	2566	chr17:37844087:-	CDK12	19343	chr17:37649004:+	ONLY_REF_SPLICE	YES	268	240	0.02	0.02	0.0278	0.0416	PGAP3->chr17:37827375-37853050:-,post-GPI_attachment_to_proteins_3,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	MKN7_STOMACH	0.02	0.02	0.0694	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	RP11-476K15.1--CTD-2015H3.2	2	3	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0.0416	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	MKN7_STOMACH	1	1	0.0694	FALSE	0	46	0	73	0	FALSE	ACH-000678
MKN7_STOMACH	ATG14--TBPL2	2	2	ATG14	9597	chr14:55844537:-	TBPL2	18544	chr14:55907181:-	ONLY_REF_SPLICE	YES	50	0	0.07	1	0.0278	0.0278	LOCAL_REARRANGEMENT:-:[1683],ATG14->autophagy_related_14,chr14:55833110-55878576:-,TBPL2->TATA-box_binding_protein_like_2,chr14:55880259-55923444:-	MKN7_STOMACH	0.07	1	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	CEP70--PIK3CB	1	6	CEP70	3661	chr3:138310696:-	PIK3CB	47750	chr3:138384045:-	ONLY_REF_SPLICE	NO	101	38	0.06	0.16	0.0139	0.0833	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:-:[59480],CEP70->centrosomal_protein_70,chr3:138213186-138313380:-,PIK3CB->ArcherDX_panel,FoundationOne_panel,chr3:138372860-138553780:-,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_beta	MKN7_STOMACH	0.06	0.16	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	NAV1--PKP1	2	2	NAV1	2428	chr1:201598635:+	PKP1	49346	chr1:201263070:+	ONLY_REF_SPLICE	YES	11	1	0.27	0.8	0.0278	0.0278	NAV1->Oncogene{Bushman},chr1:201592411-201796102:+,neuron_navigator_1,PKP1->chr1:201252580-201302121:+,plakophilin_1	MKN7_STOMACH	0.27	0.8	0.0556	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ZC3H7A--BCAR4	2	2	ZC3H7A	2049	chr16:11890075:-	BCAR4	32219	chr16:11914154:-	ONLY_REF_SPLICE	YES	2	2	0.67	0.67	0.0278	0.0278	LOCAL_REARRANGEMENT:-:[22563],ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,BCAR4->breast_cancer_anti-estrogen_resistance_4_(non-protein_coding),chr16:11913686-11922702:-	MKN7_STOMACH	0.67	0.67	0.0556	TRUE	0	12	0	3	12	TRUE	ACH-000678
MKN7_STOMACH	GNGT1--AC002076.10	2	1	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	4	0	0.43	1	0.0278	0.0139	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	MKN7_STOMACH	0.43	1	0.0417	FALSE	0	10	0	30	0	FALSE	ACH-000678
MKN7_STOMACH	LDLRAD3--PRR5L	2	1	LDLRAD3	5673	chr11:36120011:+	PRR5L	20830	chr11:36350668:+	ONLY_REF_SPLICE	NO	21	0	0.12	1	0.0278	0.0139	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	MKN7_STOMACH	0.12	1	0.0417	FALSE	2	24	3	12	0	FALSE	ACH-000678
MKN7_STOMACH	PLAGL2--ARHGAP44	2	1	PLAGL2	2525	chr20:30789722:-	ARHGAP44	20777	chr17:12844373:+	ONLY_REF_SPLICE	YES	28	2	0.1	0.6	0.0278	0.0139	PLAGL2->Oncogene{Bushman},PLAG1_like_zinc_finger_2,chr20:30780306-30795594:-,ARHGAP44->Rho_GTPase_activating_protein_44,chr17:12692856-12894960:+	MKN7_STOMACH	0.1	0.6	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	RBM6--DAG1	2	1	RBM6	1219	chr3:49977658:+	DAG1	41920	chr3:49547852:+	ONLY_REF_SPLICE	YES	20	283	0.13	0.01	0.0278	0.0139	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,DAG1->chr3:49506146-49573048:+,dystroglycan_1	MKN7_STOMACH	0.01	0.13	0.0417	FALSE	0	0	0	2	0	FALSE	ACH-000678
MKN7_STOMACH	ROCK1--ESCO1	1	5	ROCK1	6081	chr18:18625253:-	ESCO1	46191	chr18:19155738:-	ONLY_REF_SPLICE	YES	33	11	0.15	0.35	0.0139	0.0694	ROCK1->Rho_associated_coiled-coil_containing_protein_kinase_1,chr18:18526867-18691812:-,ESCO1->chr18:19109242-19180845:-,establishment_of_sister_chromatid_cohesion_N-acetyltransferase_1	MKN7_STOMACH	0.15	0.35	0.0833	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	SYTL1--WDTC1	2	1	SYTL1	6915	chr1:27675989:+	WDTC1	20174	chr1:27614165:+	ONLY_REF_SPLICE	YES	4	37	0.43	0.07	0.0278	0.0139	{Klijn_CCL:Stomach=1},LOCAL_REARRANGEMENT:+:[33403],SYTL1->chr1:27668513-27680421:+,synaptotagmin_like_1,WDTC1->WD_and_tetratricopeptide_repeats_1,chr1:27561007-27635110:+	MKN7_STOMACH	0.07	0.43	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TMCO4--ST3GAL3	2	1	TMCO4	2809	chr1:20124630:-	ST3GAL3	38245	chr1:44360055:+	ONLY_REF_SPLICE	YES	6	26	0.33	0.1	0.0278	0.0139	TMCO4->chr1:20008706-20126438:-,transmembrane_and_coiled-coil_domains_4,ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+	MKN7_STOMACH	0.1	0.33	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TMCO4--ST3GAL3	2	1	TMCO4	3967	chr1:20113519:-	ST3GAL3	38245	chr1:44360055:+	ONLY_REF_SPLICE	YES	7	26	0.3	0.1	0.0278	0.0139	TMCO4->chr1:20008706-20126438:-,transmembrane_and_coiled-coil_domains_4,ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+	MKN7_STOMACH	0.1	0.3	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	VPS13B--STK3	2	1	VPS13B	26280	chr8:100403932:+	STK3	108959	chr8:99539145:-	ONLY_REF_SPLICE	YES	8	149	0.27	0.02	0.0278	0.0139	GTEx&tcga_normals:3/3694=0.08%,GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Adipose_-_Subcutaneous=1,Whole_Blood=1},LOCAL_INVERSION:+:-:[70439],VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast),STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3	MKN7_STOMACH	0.02	0.27	0.0417	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	ABCC5--NEDD4L	2	0	ABCC5	8141	chr3:183705558:-	NEDD4L	50277	chr18:55833020:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	ABCC5->ATP_binding_cassette_subfamily_C_member_5,chr3:183637722-183735803:-,NEDD4L->chr18:55711599-56068772:+,neural_precursor_cell_expressed,_developmentally_down-regulated_4-like,_E3_ubiquitin_protein_ligase	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ARHGEF3--CCDC66	2	0	ARHGEF3	4019	chr3:57069116:-	CCDC66	47845	chr3:56647617:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	ARHGEF3->Rho_guanine_nucleotide_exchange_factor_3,chr3:56761446-57113357:-,CCDC66->chr3:56591189-56655846:+,coiled-coil_domain_containing_66	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	C14orf37--PSMA3	2	0	C14orf37	2258	chr14:58758353:-	PSMA3	24451	chr14:58718837:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	MKN7_STOMACH	1	1	0.0278	FALSE	1	3	0	9	0	FALSE	ACH-000678
MKN7_STOMACH	GLTPD1--PITHD1	1	4	GLTPD1	3037	chr1:1262412:+	PITHD1	10923	chr1:24112165:+	ONLY_REF_SPLICE	YES	82	39	0.06	0.11	0.0139	0.0555	GLTPD1->chr1:1260136-1264277:+,PITHD1->PITH_domain_containing_1,chr1:24104895-24114722:+	MKN7_STOMACH	0.06	0.11	0.0694	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	PIGT--INPPL1	2	0	PIGT	6714	chr20:44053219:+	INPPL1	12459	chr11:71935824:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	PIGT->chr20:44044717-44054884:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_T,INPPL1->Oncogene{Bushman},chr11:71934745-71950149:+,inositol_polyphosphate_phosphatase_like_1	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	PIR--ITGB4	2	0	PIR	7115	chrX:15473971:-	ITGB4	31040	chr17:73737063:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	PIR->chrX:15402921-15511687:-,pirin,ITGB4->Oncogene{Bushman},chr17:73717408-73753899:+,integrin_subunit_beta_4	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	RP11-466I1.1--PPFIA1	2	0	RP11-466I1.1	2424	chr11:29233312:+	PPFIA1	31698	chr11:70200407:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	RP11-466I1.1->chr11:29181503-29288281:+,PPFIA1->PTPRF_interacting_protein_alpha_1,chr11:70116806-70230509:+	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	RP5-977B1.7--TAF1D	2	0	RP5-977B1.7	2583	chr20:35199844:-	TAF1D	23166	chr11:93467826:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	RP5-977B1.7->chr20:35136563-35201794:-,TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	SHISA5--RPL11	2	0	SHISA5	4663	chr3:48538570:-	RPL11	15720	chr1:24019099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	SHISA5->chr3:48509197-48542259:-,shisa_family_member_5,RPL11->chr1:24018269-24022915:+,ribosomal_protein_L11	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TTC39C--CABLES1	2	0	TTC39C	8714	chr18:21649235:+	CABLES1	42586	chr18:20832924:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	{Klijn_CCL:Stomach=1},TTC39C->chr18:21572737-21715574:+,tetratricopeptide_repeat_domain_39C,CABLES1->Cdk5_and_Abl_enzyme_substrate_1,chr18:20714528-20840431:+	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	URI1--SLC7A10	2	0	URI1	5244	chr19:30433571:+	SLC7A10	31195	chr19:33700391:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	URI1->URI1_prefoldin-like_chaperone,chr19:30414551-30506611:+,SLC7A10->chr19:33699570-33716756:-,solute_carrier_family_7_member_10	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	WNK1--PRKAA2	2	0	WNK1	5126	chr12:936428:+	PRKAA2	47263	chr1:57158031:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0278	0	WNK1->WNK_lysine_deficient_protein_kinase_1,chr12:861759-1020618:+,PRKAA2->chr1:57110995-57181008:+,protein_kinase_AMP-activated_catalytic_subunit_alpha_2	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ARG2--MPP5	1	3	ARG2	2169	chr14:68087683:+	MPP5	14858	chr14:67736418:+	ONLY_REF_SPLICE	YES	74	38	0.05	0.1	0.0139	0.0416	ARG2->arginase_2,chr14:68086515-68118437:+,MPP5->chr14:67707826-67802536:+,membrane_palmitoylated_protein_5	MKN7_STOMACH	0.05	0.1	0.0555	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	RP11-123O10.4--GRIP1	1	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0139	0.0416	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MKN7_STOMACH	0.8	1	0.0555	FALSE	93	270	15	244	0	FALSE	ACH-000678
MKN7_STOMACH	SPEN--AC005594.3	1	3	SPEN	5344	chr1:16203173:+	AC005594.3	30327	chr19:4682813:+	ONLY_REF_SPLICE	YES	21	0	0.16	1	0.0139	0.0416	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,AC005594.3->chr19:4679294-4685960:+	MKN7_STOMACH	0.16	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TMEM241--RP11-403A21.3	1	3	TMEM241	17323	chr18:20889644:-	RP11-403A21.3	30996	chr18:21657223:-	ONLY_REF_SPLICE	NO	34	0	0.11	1	0.0139	0.0416	TMEM241->chr18:20777108-21017925:-,transmembrane_protein_241,RP11-403A21.3->chr18:21656758-21679284:-	MKN7_STOMACH	0.11	1	0.0555	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ATP6V1H--TCEA1	1	2	ATP6V1H	14490	chr8:54708207:-	TCEA1	26873	chr8:54923052:-	ONLY_REF_SPLICE	NO	124	235	0.02	0.01	0.0139	0.0278	GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_EBV-transformed_lymphocytes=1,Whole_Blood=1},ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-,TCEA1->Oncogene{Bushman},chr8:54879112-54935089:-,transcription_elongation_factor_A1	MKN7_STOMACH	0.01	0.02	0.0417	FALSE	0	1	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	SPEN--AC005594.3	1	2	SPEN	5344	chr1:16203173:+	AC005594.3	31237	chr19:4683723:+	ONLY_REF_SPLICE	YES	21	4	0.12	0.43	0.0139	0.0278	SPEN->ArcherDX_panel,FoundationOne_panel,chr1:16174359-16266955:+,spen_family_transcriptional_repressor,AC005594.3->chr19:4679294-4685960:+	MKN7_STOMACH	0.12	0.43	0.0417	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	ADAMTS12--ZFR	1	1	ADAMTS12	14239	chr5:33641915:-	ZFR	44720	chr5:32404202:-	ONLY_REF_SPLICE	YES	708	118	0	0.02	0.0139	0.0139	ADAMTS12->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_12,chr5:33523640-33892297:-,ZFR->chr5:32354456-32444867:-,zinc_finger_RNA_binding_protein	MKN7_STOMACH	0	0.02	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	ANKHD1--CYSTM1	1	1	ANKHD1	1460	chr5:139781858:+	CYSTM1	45843	chr5:139574031:+	ONLY_REF_SPLICE	YES	28	26	0.07	0.07	0.0139	0.0139	GTEx_v2:{count=1;pct=0.01%;dist=Small_Intestine_-_Terminal_Ileum=1},ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,CYSTM1->chr5:139554227-139661637:+,cysteine_rich_transmembrane_module_containing_1	MKN7_STOMACH	0.07	0.07	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	ARHGEF28--BTF3	1	1	ARHGEF28	3185	chr5:72980709:+	BTF3	56982	chr5:72798313:+	ONLY_REF_SPLICE	YES	55	1911	0.04	0	0.0139	0.0139	GTEx_v2:{count=1;pct=0.01%;dist=Adrenal_Gland=1},ARHGEF28->Rho_guanine_nucleotide_exchange_factor_28,chr5:72921983-73237818:+,BTF3->basic_transcription_factor_3,chr5:72794233-72801460:+	MKN7_STOMACH	0	0.04	0.0278	FALSE	0	5	0	3	4	FALSE	ACH-000678
MKN7_STOMACH	ARHGEF28--ENC1	1	1	ARHGEF28	1165	chr5:72922147:+	ENC1	58059	chr5:73932323:-	ONLY_REF_SPLICE	NO	37	82	0.05	0.02	0.0139	0.0139	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Frontal_Cortex_(BA9)=1},ARHGEF28->Rho_guanine_nucleotide_exchange_factor_28,chr5:72921983-73237818:+,ENC1->Oncogene{Bushman},chr5:73923234-73937249:-,ectodermal-neural_cortex_1	MKN7_STOMACH	0.02	0.05	0.0278	TRUE	0	0	0	2	0	FALSE	ACH-000678
MKN7_STOMACH	CHST11--APPL2	1	1	CHST11	5138	chr12:104995769:+	APPL2	17770	chr12:105623001:-	ONLY_REF_SPLICE	YES	74	61	0.03	0.03	0.0139	0.0139	CHST11->carbohydrate_(chondroitin_4)_sulfotransferase_11,chr12:104849073-105155792:+,APPL2->adaptor_protein,_phosphotyrosine_interacting_with_PH_domain_and_leucine_zipper_2,chr12:105567074-105630016:-	MKN7_STOMACH	0.03	0.03	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	FUT8--MAX	1	1	FUT8	19343	chr14:66136198:+	MAX	31098	chr14:65560533:-	ONLY_REF_SPLICE	YES	222	208	0.01	0.01	0.0139	0.0139	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,MAX->MYC_associated_factor_X,Oncogene{Bushman},chr14:65472892-65569413:-	MKN7_STOMACH	0.01	0.01	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	GNGT1--AC002076.10	1	1	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0139	0.0139	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	MKN7_STOMACH	0.33	1	0.0278	FALSE	0	28	0	37	0	FALSE	ACH-000678
MKN7_STOMACH	KLHDC10--NRF1	1	1	KLHDC10	12290	chr7:129769416:+	NRF1	37398	chr7:129394858:+	ONLY_REF_SPLICE	YES	34	15	0.06	0.12	0.0139	0.0139	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},KLHDC10->chr7:129710350-129775560:+,kelch_domain_containing_10,NRF1->Oncogene{Bushman},chr7:129251555-129396922:+,nuclear_respiratory_factor_1	MKN7_STOMACH	0.06	0.12	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	MAX--CHURC1	1	1	MAX	3258	chr14:65560426:-	CHURC1	14223	chr14:65390709:+	ONLY_REF_SPLICE	YES	198	9	0.01	0.18	0.0139	0.0139	LOCAL_INVERSION:-:+:[61583],MAX->MYC_associated_factor_X,Oncogene{Bushman},chr14:65472892-65569413:-,CHURC1->chr14:65381079-65411309:+,churchill_domain_containing_1	MKN7_STOMACH	0.01	0.18	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	NCOR2--SLC15A4	1	1	NCOR2	12551	chr12:124922476:-	SLC15A4	65119	chr12:129294598:-	ONLY_REF_SPLICE	NO	48	37	0.04	0.05	0.0139	0.0139	NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,SLC15A4->chr12:129277739-129308528:-,solute_carrier_family_15_member_4	MKN7_STOMACH	0.04	0.05	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	NFAT5--CYB5B	1	1	NFAT5	13901	chr16:69711238:+	CYB5B	35547	chr16:69481053:+	ONLY_REF_SPLICE	NO	47	654	0.04	0	0.0139	0.0139	LOCAL_REARRANGEMENT:+:[98828],NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	MKN7_STOMACH	0	0.04	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	NPC1--LAMA3	1	1	NPC1	13059	chr18:21131591:-	LAMA3	88159	chr18:21481091:+	ONLY_REF_SPLICE	YES	69	1513	0.03	0	0.0139	0.0139	NPC1->NPC_intracellular_cholesterol_transporter_1,chr18:21086148-21166862:-,LAMA3->chr18:21269407-21535030:+,laminin_subunit_alpha_3	MKN7_STOMACH	0	0.03	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	NUDCD1--EBAG9	1	1	NUDCD1	3778	chr8:110334538:-	EBAG9	29258	chr8:110576668:+	ONLY_REF_SPLICE	NO	142	60	0.01	0.03	0.0139	0.0139	NUDCD1->NudC_domain_containing_1,chr8:110253148-110346614:-,EBAG9->Oncogene{Bushman},chr8:110551940-110578225:+,estrogen_receptor_binding_site_associated,_antigen,_9	MKN7_STOMACH	0.01	0.03	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	PCNX--RP6-65G23.1	1	1	PCNX	3909	chr14:71413840:+	RP6-65G23.1	60535	chr14:71170412:+	ONLY_REF_SPLICE	NO	75	9	0.03	0.18	0.0139	0.0139	PCNX->chr14:71374122-71582099:+,RP6-65G23.1->chr14:71165415-71178870:+	MKN7_STOMACH	0.03	0.18	0.0278	TRUE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	PPM1H--AVPR1A	1	1	PPM1H	13226	chr12:63060958:-	AVPR1A	23958	chr12:63541425:-	ONLY_REF_SPLICE	YES	17	2	0.11	0.5	0.0139	0.0139	PPM1H->chr12:63037762-63328817:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1H,AVPR1A->arginine_vasopressin_receptor_1A,chr12:63539014-63544722:-	MKN7_STOMACH	0.11	0.5	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
MKN7_STOMACH	TANC1--PHLDB2	1	1	TANC1	2259	chr2:159857701:+	PHLDB2	47600	chr3:111632166:+	ONLY_REF_SPLICE	NO	21	253	0.09	0.01	0.0139	0.0139	TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,PHLDB2->chr3:111451344-111695364:+,pleckstrin_homology_like_domain_family_B_member_2	MKN7_STOMACH	0.01	0.09	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	TOMM40--CEACAM19	1	1	TOMM40	4498	chr19:45397323:+	CEACAM19	17486	chr19:45179543:+	ONLY_REF_SPLICE	NO	351	122	0.01	0.02	0.0139	0.0139	{Klijn_CCL:Stomach=1},TOMM40->chr19:45393826-45406946:+,translocase_of_outer_mitochondrial_membrane_40,CEACAM19->carcinoembryonic_antigen_related_cell_adhesion_molecule_19,chr19:45165545-45187631:+	MKN7_STOMACH	0.01	0.02	0.0278	FALSE	0	0	0	1	0	FALSE	ACH-000678
MKN7_STOMACH	WWOX--VAT1L	1	1	WWOX	23541	chr16:78466649:+	VAT1L	37762	chr16:77910267:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0139	0.0139	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	MKN7_STOMACH	1	1	0.0278	TRUE	0	0	0	1	0	TRUE	ACH-000678
YAPC_PANCREAS	MEGF6--PLCH2	60	36	MEGF6	4708	chr1:3496389:-	PLCH2	37795	chr1:2409915:+	ONLY_REF_SPLICE	YES	4	37	0.96	0.72	0.9433	0.566	{Klijn_CCL:Pancreas=1},MEGF6->chr1:3406484-3528059:-,multiple_EGF_like_domains_6,PLCH2->Oncogene{Bushman},chr1:2357419-2436969:+,phospholipase_C_eta_2	YAPC_PANCREAS	0.72	0.96	1.5093	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	VEGFA--KIF6	33	12	VEGFA	2129	chr6:43739049:+	KIF6	21396	chr6:39688587:-	ONLY_REF_SPLICE	YES	32	1	0.58	0.98	0.5188	0.1887	{Klijn_CCL:Pancreas=1},VEGFA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:43737921-43754224:+,vascular_endothelial_growth_factor_A,KIF6->chr6:39297766-39693181:-,kinesin_family_member_6	YAPC_PANCREAS	0.58	0.98	0.7075	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	TIMM23B--LINC00843	21	1	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3301	0.0157	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	YAPC_PANCREAS	1	1	0.3458	TRUE	508	994	45	981	0	FALSE	ACH-000332
YAPC_PANCREAS	SIM2--RIPPLY3	9	7	SIM2	5325	chr21:38084922:+	RIPPLY3	24447	chr21:38385851:+	ONLY_REF_SPLICE	YES	0	3	1	0.84	0.1415	0.11	SIM2->chr21:38071433-38122218:+,single-minded_family_bHLH_transcription_factor_2,RIPPLY3->chr21:38378450-38391959:+,ripply_transcriptional_repressor_3	YAPC_PANCREAS	0.84	1	0.2515	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	TIMM23--RP11-464F9.1	10	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1572	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	YAPC_PANCREAS	1	1	0.1572	TRUE	519	3926	326	965	0	FALSE	ACH-000332
YAPC_PANCREAS	MT-TA--MT-TC	9	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1415	0.0157	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	YAPC_PANCREAS	1	1	0.1572	FALSE	462	80	0	856	0	FALSE	ACH-000332
YAPC_PANCREAS	TFEB--TRERF1	7	2	TFEB	1910	chr6:41703088:-	TRERF1	20005	chr6:42330817:-	ONLY_REF_SPLICE	YES	2	19	0.82	0.32	0.11	0.0314	{Klijn_CCL:Stomach=2,Head-Neck=1},TFEB->Oncogene{Bushman},chr6:41651716-41703997:-,transcription_factor_EB,TRERF1->chr6:42192669-42419789:-,transcriptional_regulating_factor_1	YAPC_PANCREAS	0.32	0.82	0.1414	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	CAMTA1--MRPS18A	7	1	CAMTA1	4547	chr1:6885270:+	MRPS18A	42003	chr6:43648857:-	ONLY_REF_SPLICE	YES	18	171	0.31	0.04	0.11	0.0157	CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+,MRPS18A->chr6:43639040-43655528:-,mitochondrial_ribosomal_protein_S18A	YAPC_PANCREAS	0.04	0.31	0.1257	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	MT-CO3--MT-ATP6	6	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0943	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	YAPC_PANCREAS	1	1	0.0943	FALSE	189	492	56	216	0	FALSE	ACH-000332
YAPC_PANCREAS	MT-CO3--MT-ATP6	4	2	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0629	0.0314	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	YAPC_PANCREAS	1	1	0.0943	FALSE	189	492	56	216	0	FALSE	ACH-000332
YAPC_PANCREAS	MT-CO2--MT-RNR2	4	0	MT-CO2	1381	chrM:7966:+	MT-RNR2	4721	chrM:1707:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0629	0	LOCAL_REARRANGEMENT:+:[4357],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	YAPC_PANCREAS	1	1	0.0629	FALSE	24	6	1	8	0	FALSE	ACH-000332
YAPC_PANCREAS	SWAP70--WEE1	4	0	SWAP70	1202	chr11:9685825:+	WEE1	28332	chr11:9598689:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0629	0	YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],{Klijn_CCL:Lymphoid=1},LOCAL_REARRANGEMENT:+:[70620],SWAP70->Oncogene{Bushman},SWAP_switching_B-cell_complex_70kDa_subunit,chr11:9685624-9774538:+,WEE1->WEE1_G2_checkpoint_kinase,chr11:9595228-9615004:+	YAPC_PANCREAS	1	1	0.0629	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0472	0.0314	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	YAPC_PANCREAS	1	1	0.0786	FALSE	515	4851	409	746	0	FALSE	ACH-000332
YAPC_PANCREAS	ARFIP2--LSP1	3	1	ARFIP2	4719	chr11:6498948:-	LSP1	26877	chr11:1913003:+	ONLY_REF_SPLICE	YES	18	2	0.18	0.67	0.0472	0.0157	ARFIP2->ADP_ribosylation_factor_interacting_protein_2,chr11:6496910-6502666:-,LSP1->chr11:1874200-1913497:+,chr13:25591541-25591675:+,lymphocyte-specific_protein_1	YAPC_PANCREAS	0.18	0.67	0.0629	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	CCND3--WDR62	3	1	CCND3	2857	chr6:42016239:-	WDR62	40011	chr19:36590301:+	ONLY_REF_SPLICE	YES	24	4	0.14	0.5	0.0472	0.0157	CCND3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:41902671-42018095:-,cyclin_D3,WDR62->WD_repeat_domain_62,chr19:36545783-36596008:+	YAPC_PANCREAS	0.14	0.5	0.0629	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	MIR3676--FLNB	3	0	MIR3676	1062	chr17:8090554:+	FLNB	50778	chr3:58148877:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	MIR3676->chr17:8090493-8090577:+,FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B	YAPC_PANCREAS	1	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	MT-TC--MT-TY	3	0	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	YAPC_PANCREAS	1	1	0.0472	FALSE	51	280	19	36	0	FALSE	ACH-000332
YAPC_PANCREAS	MT-TC--MT-TY	3	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	YAPC_PANCREAS	1	1	0.0472	FALSE	51	280	19	36	0	FALSE	ACH-000332
YAPC_PANCREAS	PKM--CCDC94	3	0	PKM	18707	chr15:72492923:-	CCDC94	25458	chr19:4249273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,CCDC94->chr19:4247076-4269087:+,coiled-coil_domain_containing_94	YAPC_PANCREAS	1	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	TBC1D15--NAP1L1	3	0	TBC1D15	1105	chr12:72233591:+	NAP1L1	41127	chr12:76449941:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0472	0	TBC1D15->TBC1_domain_family_member_15,chr12:72233487-72320629:+,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	YAPC_PANCREAS	1	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	TCHP--LRRN1	3	0	TCHP	17087	chr12:110368480:+	LRRN1	32084	chr3:3887034:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	TCHP->chr12:110338069-110421646:+,trichoplein_keratin_filament_binding,LRRN1->chr3:3841121-3889387:+,leucine_rich_repeat_neuronal_1	YAPC_PANCREAS	1	1	0.0472	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	VEGFA--KIF6	1	5	VEGFA	2129	chr6:43739049:+	KIF6	23855	chr6:39682542:-	ONLY_REF_SPLICE	YES	32	7	0.16	0.46	0.0157	0.0786	{Klijn_CCL:Pancreas=1},VEGFA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:43737921-43754224:+,vascular_endothelial_growth_factor_A,KIF6->chr6:39297766-39693181:-,kinesin_family_member_6	YAPC_PANCREAS	0.16	0.46	0.0943	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	ABCA5--RPL35A	2	0	ABCA5	2312	chr17:67321840:-	RPL35A	53810	chr3:197680874:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-,RPL35A->chr3:197676858-197683481:+,ribosomal_protein_L35a	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	ATG16L2--ANP32B	2	0	ATG16L2	4225	chr11:72528900:+	ANP32B	23210	chr9:100756913:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	ATG16L2->autophagy_related_16_like_2,chr11:72525353-72554719:+,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	CALM2--ZBTB2	2	0	CALM2	1161	chr2:47403580:-	ZBTB2	16067	chr6:151694784:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,ZBTB2->ArcherDX_panel,FoundationOne_panel,chr6:151685252-151712683:-,zinc_finger_and_BTB_domain_containing_2	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	FDPS--POLR2B	2	0	FDPS	3847	chr1:155282186:+	POLR2B	28361	chr4:57887065:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	FDPS->chr1:155278539-155290457:+,farnesyl_diphosphate_synthase,POLR2B->chr4:57843888-57897334:+,polymerase_(RNA)_II_subunit_B	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	FUT8--NDUFB2	2	0	FUT8	3623	chr14:65879932:+	NDUFB2	36008	chr7:140402666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	FUT8->Oncogene{Bushman},chr14:65877310-66210839:+,fucosyltransferase_8,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	HEXA--EEF1D	2	0	HEXA	19104	chr15:72637787:-	EEF1D	35180	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	HEXA->chr15:72635775-72668817:-,hexosaminidase_subunit_alpha,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	IRF2--ZNF706	2	0	IRF2	1202	chr4:185395533:-	ZNF706	20920	chr8:102213971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	IRF2->ArcherDX_panel,FoundationOne_panel,chr4:185308867-185395734:-,interferon_regulatory_factor_2,ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	KDM5C--SMC1A	2	0	KDM5C	3663	chrX:53250021:-	SMC1A	31459	chrX:53436434:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	KDM5C->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chrX:53220503-53254604:-,lysine_demethylase_5C,SMC1A->chrX:53401070-53449677:-,structural_maintenance_of_chromosomes_1A	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	RP11-93L9.1--AKR1E2	2	0	RP11-93L9.1	3263	chr4:124582988:+	AKR1E2	27845	chr10:4883977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	RP11-93L9.1->chr4:124571422-124851561:+,AKR1E2->aldo-keto_reductase_family_1,_member_E2,chr10:4828821-4890254:+	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	SIM2--RIPPLY3	1	4	SIM2	5325	chr21:38084922:+	RIPPLY3	25515	chr21:38390174:+	ONLY_REF_SPLICE	YES	0	1	1	0.83	0.0157	0.0629	SIM2->chr21:38071433-38122218:+,single-minded_family_bHLH_transcription_factor_2,RIPPLY3->chr21:38378450-38391959:+,ripply_transcriptional_repressor_3	YAPC_PANCREAS	0.83	1	0.0786	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	THG1L--CLINT1	2	0	THG1L	2612	chr5:157160052:+	CLINT1	13680	chr5:157244555:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[44295],THG1L->chr5:157158205-157168456:+,tRNA-histidine_guanylyltransferase_1_like,CLINT1->chr5:157212751-157286183:-,clathrin_interactor_1	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	THUMPD2--MAP4K3	2	0	THUMPD2	1154	chr2:40006254:-	MAP4K3	32036	chr2:39526942:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	THUMPD2->THUMP_domain_containing_2,chr2:39963200-40006407:-,MAP4K3->chr2:39476407-39664453:-,mitogen-activated_protein_kinase_kinase_kinase_kinase_3	YAPC_PANCREAS	1	1	0.0314	TRUE	0	0	0	1	0	TRUE	ACH-000332
YAPC_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0.0314	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	YAPC_PANCREAS	1	1	0.0471	FALSE	467	2173	244	435	0	FALSE	ACH-000332
YAPC_PANCREAS	SUPT3H--RUNX2	1	1	SUPT3H	2744	chr6:45332938:-	RUNX2	24887	chr6:45339626:+	ONLY_REF_SPLICE	NO	5	0	0.29	1	0.0157	0.0157	NEIGHBORS_OVERLAP:-:+:[49796],SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,RUNX2->Oncogene{Bushman},chr6:45295894-45632086:+,runt_related_transcription_factor_2	YAPC_PANCREAS	0.29	1	0.0314	FALSE	0	0	0	1	0	FALSE	ACH-000332
YAPC_PANCREAS	TYMS--DOCK1	1	1	TYMS	4286	chr18:662320:+	DOCK1	14346	chr10:128768966:+	ONLY_REF_SPLICE	YES	53	7	0.04	0.22	0.0157	0.0157	TYMS->chr18:657604-673578:+,thymidylate_synthetase,DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1	YAPC_PANCREAS	0.04	0.22	0.0314	TRUE	0	2	0	2	0	TRUE	ACH-000332
SNU324_PANCREAS	ABCC3--CACNA1G	313	55	ABCC3	1205	chr17:48712342:+	CACNA1G	46636	chr17:48673923:+	ONLY_REF_SPLICE	YES	105	0	0.78	1	2.6142	0.4594	LOCAL_REARRANGEMENT:+:[7303],ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+,CACNA1G->calcium_voltage-gated_channel_subunit_alpha1_G,chr17:48638429-48704835:+	SNU324_PANCREAS	0.78	1	3.0736	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	TIMM23B--LINC00843	121	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0106	0.2005	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU324_PANCREAS	1	1	1.2111	TRUE	508	994	45	981	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-TA--MT-TN	104	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8686	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU324_PANCREAS	1	1	0.8686	FALSE	369	2501	205	193	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-CO1--LCN2	76	6	MT-CO1	1968	chrM:6871:+	LCN2	5925	chr9:130911732:+	INCL_NON_REF_SPLICE	YES	25620	1	0	0.99	0.6348	0.0501	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,LCN2->chr9:130911350-130915734:+,lipocalin_2	SNU324_PANCREAS	0	0.99	0.6849	FALSE	0	5	0	1	0	FALSE	ACH-000933
SNU324_PANCREAS	ZNF654--HMGB2	77	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6431	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU324_PANCREAS	1	1	0.6431	TRUE	0	0	0	518	0	FALSE	ACH-000933
SNU324_PANCREAS	TIMM23--RP11-464F9.1	73	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	196	7	0.27	0.91	0.6097	0.0084	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU324_PANCREAS	0.27	0.91	0.6181	TRUE	519	3926	326	965	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-TA--MT-TC	58	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4844	0.0251	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU324_PANCREAS	1	1	0.5095	FALSE	462	80	0	856	0	FALSE	ACH-000933
SNU324_PANCREAS	ABCC3--CACNA1G	51	24	ABCC3	1205	chr17:48712342:+	CACNA1G	46804	chr17:48674091:+	ONLY_REF_SPLICE	YES	105	7	0.42	0.91	0.426	0.2005	LOCAL_REARRANGEMENT:+:[7303],ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+,CACNA1G->calcium_voltage-gated_channel_subunit_alpha1_G,chr17:48638429-48704835:+	SNU324_PANCREAS	0.42	0.91	0.6265	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	39	1	MT-ND4	1151	chrM:10910:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	NO	9358	246	0	0.14	0.3257	0.0084	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.14	0.3341	FALSE	230	193	14	283	0	FALSE	ACH-000933
SNU324_PANCREAS	PLXDC1--TAF13	39	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3257	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SNU324_PANCREAS	1	1	0.3257	TRUE	7	10	0	216	0	FALSE	ACH-000933
SNU324_PANCREAS	EML4--ALK	30	24	EML4	8303	chr2:42491871:+	ALK	58055	chr2:29446394:-	ONLY_REF_SPLICE	YES	38	0	0.59	1	0.2506	0.2005	Cosmic{samples=10751,mutations=680,papers=477},YOSHIHARA_TCGA_num_samples[LUAD:4|THCA:1],chimerdb_pubmed{nonsmallcell lung cancer (NSCLC),nonsmall cell lung cancers (NSCLC),lung cancer,nonsmall cell lung cancer (NSCLC),nonsmall cell lung carcinoma,lung cancers,nonsmallcell lung cancers (NSCLC)},{Klijn_CCL:Lung=1},EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	SNU324_PANCREAS	0.59	1	0.4511	TRUE	0	2	0	2	2	TRUE	ACH-000933
SNU324_PANCREAS	MT-TA--MT-TN	11	90	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0919	0.7517	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU324_PANCREAS	1	1	0.8436	FALSE	369	2501	205	193	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND6--MT-TE	32	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2673	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU324_PANCREAS	1	1	0.2673	FALSE	499	1288	110	792	0	FALSE	ACH-000933
SNU324_PANCREAS	RP11-123O10.4--GRIP1	28	10	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2339	0.0835	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU324_PANCREAS	1	1	0.3174	FALSE	416	2512	207	587	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-TA--MT-TN	10	64	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0835	0.5345	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU324_PANCREAS	1	1	0.618	FALSE	369	2501	205	193	0	FALSE	ACH-000933
SNU324_PANCREAS	C15orf57--CBX3	21	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	41	61	0.46	0.36	0.1754	0.1169	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU324_PANCREAS	0.36	0.46	0.2923	TRUE	267	562	48	632	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-TA--MT-TN	12	47	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1002	0.3925	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU324_PANCREAS	1	1	0.4927	FALSE	369	2501	205	193	0	FALSE	ACH-000933
SNU324_PANCREAS	OR51S1--TP53I11	21	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1754	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SNU324_PANCREAS	1	1	0.1754	TRUE	402	216	10	229	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-TA--MT-TC	19	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1587	0.0251	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU324_PANCREAS	1	1	0.1838	FALSE	462	80	0	856	0	FALSE	ACH-000933
SNU324_PANCREAS	ARMC6--UPF1	18	6	ARMC6	12909	chr19:19168467:+	UPF1	20268	chr19:18956789:+	ONLY_REF_SPLICE	YES	57	2	0.3	0.92	0.1503	0.0501	ARMC6->armadillo_repeat_containing_6,chr19:19144384-19170563:+,UPF1->UPF1,_RNA_helicase_and_ATPase,chr19:18942747-18979045:+	SNU324_PANCREAS	0.3	0.92	0.2004	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	MT-TA--MT-TN	12	30	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1002	0.2506	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU324_PANCREAS	1	1	0.3508	FALSE	369	2501	205	193	0	FALSE	ACH-000933
SNU324_PANCREAS	EML4--ALK	12	28	EML4	8523	chr2:42492091:+	ALK	58055	chr2:29446394:-	ONLY_REF_SPLICE	YES	43	0	0.48	1	0.1002	0.2339	Cosmic{samples=10751,mutations=680,papers=477},YOSHIHARA_TCGA_num_samples[LUAD:4|THCA:1],chimerdb_pubmed{nonsmallcell lung cancer (NSCLC),nonsmall cell lung cancers (NSCLC),lung cancer,nonsmall cell lung cancer (NSCLC),nonsmall cell lung carcinoma,lung cancers,nonsmallcell lung cancers (NSCLC)},{Klijn_CCL:Lung=1},EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4,ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	SNU324_PANCREAS	0.48	1	0.3341	TRUE	0	2	0	2	2	TRUE	ACH-000933
SNU324_PANCREAS	MT-CO1--LCN2	17	8	MT-CO1	1978	chrM:6881:+	LCN2	5934	chr9:130911741:+	INCL_NON_REF_SPLICE	YES	25045	1	0	0.96	0.142	0.0668	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,LCN2->chr9:130911350-130915734:+,lipocalin_2	SNU324_PANCREAS	0	0.96	0.2088	FALSE	0	5	0	1	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-CO3--MT-ATP6	6	51	MT-CO3	1138	chrM:9344:+	MT-ATP6	5065	chrM:8807:+	INCL_NON_REF_SPLICE	YES	7	133	0.89	0.3	0.0501	0.426	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU324_PANCREAS	0.3	0.89	0.4761	FALSE	189	492	56	216	0	FALSE	ACH-000933
SNU324_PANCREAS	SLC34A2--MT-CO1	17	7	SLC34A2	12624	chr4:25674871:+	MT-CO1	21760	chrM:7086:+	INCL_NON_REF_SPLICE	YES	3523	22966	0.01	0	0.142	0.0585	SLC34A2->Oncogene{Bushman},chr4:25656923-25680370:+,solute_carrier_family_34_member_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU324_PANCREAS	0	0.01	0.2005	FALSE	0	0	0	1	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	18	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	12008	5	0	0.79	0.1503	0.0084	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.79	0.1587	FALSE	230	193	14	283	0	FALSE	ACH-000933
SNU324_PANCREAS	HSP90AB1--MT-RNR2	17	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2140	0	0.01	1	0.142	0.0251	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU324_PANCREAS	0.01	1	0.1671	FALSE	13	9	0	364	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-CO3--MT-ATP6	3	59	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	NO	11	0	0.85	1	0.0251	0.4928	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU324_PANCREAS	0.85	1	0.5179	FALSE	189	492	56	216	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-CO3--MT-ATP6	3	59	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	11	0	0.85	1	0.0251	0.4928	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU324_PANCREAS	0.85	1	0.5179	FALSE	189	492	56	216	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-CO3--MT-ATP6	4	51	MT-CO3	1138	chrM:9344:+	MT-ATP6	4905	chrM:8647:+	INCL_NON_REF_SPLICE	YES	7	28	0.89	0.66	0.0334	0.426	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU324_PANCREAS	0.66	0.89	0.4594	FALSE	189	492	56	216	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	16	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13677	7	0	0.72	0.1336	0.0167	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.72	0.1503	FALSE	231	205	14	283	0	FALSE	ACH-000933
SNU324_PANCREAS	NIPA2--POLA1	16	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1336	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SNU324_PANCREAS	1	1	0.1336	TRUE	46	1352	75	139	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-CO3--MT-ATP6	3	50	MT-CO3	1144	chrM:9350:+	MT-ATP6	5183	chrM:8925:+	INCL_NON_REF_SPLICE	YES	8	89	0.87	0.37	0.0251	0.4176	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU324_PANCREAS	0.37	0.87	0.4427	FALSE	189	492	56	216	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-CO3--MT-ATP6	3	49	MT-CO3	1220	chrM:9426:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	11	8	0.83	0.87	0.0251	0.4093	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU324_PANCREAS	0.83	0.87	0.4344	FALSE	189	492	56	216	0	FALSE	ACH-000933
SNU324_PANCREAS	ABCC3--CACNA1G	1	55	ABCC3	1205	chr17:48712342:+	CACNA1G	45567	chr17:48672354:+	ONLY_REF_SPLICE	NO	105	0	0.35	1	0.0084	0.4594	LOCAL_REARRANGEMENT:+:[7303],ABCC3->ATP_binding_cassette_subfamily_C_member_3,chr17:48712138-48769613:+,CACNA1G->calcium_voltage-gated_channel_subunit_alpha1_G,chr17:48638429-48704835:+	SNU324_PANCREAS	0.35	1	0.4678	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	MT-TA--MT-TN	3	47	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0.3925	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU324_PANCREAS	1	1	0.4176	FALSE	369	2501	205	193	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-TA--MT-TN	14	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1169	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU324_PANCREAS	1	1	0.1169	FALSE	369	2501	205	193	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-CO3--MT-ATP6	3	43	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	0	17	1	0.73	0.0251	0.3591	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU324_PANCREAS	0.73	1	0.3842	FALSE	189	492	56	216	0	FALSE	ACH-000933
SNU324_PANCREAS	HSP90AB1--MT-RNR2	13	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2148	0	0.01	1	0.1086	0.0167	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU324_PANCREAS	0.01	1	0.1253	FALSE	13	9	0	364	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	12	6	MT-ND4	2053	chrM:11812:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13089	35	0	0.34	0.1002	0.0501	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.34	0.1503	FALSE	231	215	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	VEGFA--LCN2	13	1	VEGFA	16298	chr6:43753288:+	LCN2	20617	chr9:130911732:+	INCL_NON_REF_SPLICE	YES	1419	1	0.01	0.93	0.1086	0.0084	VEGFA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:43737921-43754224:+,vascular_endothelial_growth_factor_A,LCN2->chr9:130911350-130915734:+,lipocalin_2	SNU324_PANCREAS	0.01	0.93	0.117	TRUE	0	0	0	2	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	12	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13976	35	0	0.31	0.1002	0.0334	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.31	0.1336	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	SLC1A5--MT-ND4L	12	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1002	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU324_PANCREAS	1	1	0.1002	FALSE	0	0	0	189	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-TA--MT-TN	11	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0919	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU324_PANCREAS	1	1	0.0919	FALSE	369	2501	205	193	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND6--MT-TE	9	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0752	0.0334	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU324_PANCREAS	0.93	1	0.1086	FALSE	499	1288	110	792	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	9	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14260	7	0	0.63	0.0752	0.0251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.63	0.1003	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	RABGAP1L--DARS2	9	2	RABGAP1L	14961	chr1:174274265:+	DARS2	67170	chr1:173814367:+	ONLY_REF_SPLICE	YES	17	98	0.39	0.1	0.0752	0.0167	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,DARS2->aspartyl-tRNA_synthetase_2,_mitochondrial,chr1:173793641-173827684:+	SNU324_PANCREAS	0.1	0.39	0.0919	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	MT-ATP6--MT-RNR2	9	1	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	11706	0	0	1	0.0752	0.0084	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU324_PANCREAS	0	1	0.0836	FALSE	63	17	1	58	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	8	4	MT-ND4	1528	chrM:11287:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	NO	17008	0	0	1	0.0668	0.0334	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	1	0.1002	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-TA--MT-TN	3	24	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0.2005	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU324_PANCREAS	1	1	0.2256	FALSE	369	2501	205	193	0	FALSE	ACH-000933
SNU324_PANCREAS	SLC34A2--MT-CO1	6	12	SLC34A2	17113	chr4:25679906:+	MT-CO1	20749	chrM:6075:+	INCL_NON_REF_SPLICE	YES	2562	11954	0.01	0	0.0501	0.1002	SLC34A2->Oncogene{Bushman},chr4:25656923-25680370:+,solute_carrier_family_34_member_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU324_PANCREAS	0	0.01	0.1503	FALSE	0	0	0	1	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	8	3	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	14348	1634	0	0.01	0.0668	0.0251	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.01	0.0919	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	8	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	11911	7	0	0.56	0.0668	0.0084	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.56	0.0752	FALSE	230	198	14	283	0	FALSE	ACH-000933
SNU324_PANCREAS	ARF1--MT-CO1	7	1	ARF1	6843	chr1:228285395:+	MT-CO1	11358	chrM:5901:+	INCL_NON_REF_SPLICE	YES	1919	0	0	1	0.0585	0.0084	ARF1->ADP_ribosylation_factor_1,chr1:228270361-228286912:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU324_PANCREAS	0	1	0.0669	FALSE	0	0	0	7	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ATP6--MT-RNR2	7	1	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	9973	0	0	1	0.0585	0.0084	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU324_PANCREAS	0	1	0.0669	FALSE	63	17	1	58	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ATP6--MT-RNR2	7	1	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	NO	10749	0	0	1	0.0585	0.0084	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU324_PANCREAS	0	1	0.0669	FALSE	63	17	1	58	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	6	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	14993	0	0	1	0.0501	0.0334	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	1	0.0835	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	HMGA1--MT-ND4L	5	7	HMGA1	7583	chr6:34213592:+	MT-ND4L	11015	chrM:10485:+	INCL_NON_REF_SPLICE	YES	2235	0	0.01	1	0.0418	0.0585	HMGA1->Oncogene{Bushman},chr6:34204650-34214008:+,high_mobility_group_AT-hook_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU324_PANCREAS	0.01	1	0.1003	FALSE	0	0	0	2	0	FALSE	ACH-000933
SNU324_PANCREAS	SLC34A2--MT-CO1	5	7	SLC34A2	12623	chr4:25674870:+	MT-CO1	21759	chrM:7085:+	INCL_NON_REF_SPLICE	NO	3510	22990	0	0	0.0418	0.0585	SLC34A2->Oncogene{Bushman},chr4:25656923-25680370:+,solute_carrier_family_34_member_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU324_PANCREAS	0	0	0.1003	FALSE	0	0	0	1	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	6	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13677	35	0	0.19	0.0501	0.0167	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.19	0.0668	FALSE	231	205	14	283	0	FALSE	ACH-000933
SNU324_PANCREAS	SLC34A2--MT-CO1	4	10	SLC34A2	15706	chr4:25678499:+	MT-CO1	21008	chrM:6334:+	INCL_NON_REF_SPLICE	NO	2801	22789	0	0	0.0334	0.0835	SLC34A2->Oncogene{Bushman},chr4:25656923-25680370:+,solute_carrier_family_34_member_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU324_PANCREAS	0	0	0.1169	FALSE	0	0	0	1	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	5	5	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	14741	850	0	0.01	0.0418	0.0418	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.01	0.0836	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	VEGFA--LCN2	6	1	VEGFA	16320	chr6:43753310:+	LCN2	20638	chr9:130911753:+	INCL_NON_REF_SPLICE	YES	1408	1	0	0.88	0.0501	0.0084	VEGFA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr6:43737921-43754224:+,vascular_endothelial_growth_factor_A,LCN2->chr9:130911350-130915734:+,lipocalin_2	SNU324_PANCREAS	0	0.88	0.0585	FALSE	0	0	0	2	0	FALSE	ACH-000933
SNU324_PANCREAS	C15orf57--CBX3	4	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	40	62	0.23	0.16	0.0334	0.0668	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU324_PANCREAS	0.16	0.23	0.1002	TRUE	267	562	48	632	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-CO3--MT-ATP6	3	12	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	2	2	0.88	0.88	0.0251	0.1002	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU324_PANCREAS	0.88	0.88	0.1253	FALSE	189	492	56	216	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	5	4	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13895	0	0	1	0.0418	0.0334	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	1	0.0752	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND6--MT-TE	6	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0501	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU324_PANCREAS	1	1	0.0501	FALSE	499	1288	110	792	0	FALSE	ACH-000933
SNU324_PANCREAS	RP11-96H19.1--RP11-446N19.1	5	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0418	0.0334	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU324_PANCREAS	0.9	1	0.0752	FALSE	515	4851	409	746	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-CO3--MT-ATP6	5	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	8	0	0.5	1	0.0418	0.0251	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU324_PANCREAS	0.5	1	0.0669	FALSE	189	492	56	216	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	4	7	MT-ND4	1901	chrM:11660:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	NO	14852	0	0	1	0.0334	0.0585	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	1	0.0919	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	4	6	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13702	35	0	0.22	0.0334	0.0501	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.22	0.0835	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	5	2	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	16646	791	0	0.01	0.0418	0.0167	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.01	0.0585	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	4	6	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	14306	0	0	1	0.0334	0.0501	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	1	0.0835	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	4	6	MT-ND4	1494	chrM:11253:+	MT-ATP8	5431	chrM:8418:+	INCL_NON_REF_SPLICE	YES	14926	0	0	1	0.0334	0.0501	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	1	0.0835	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	5	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	12064	5	0	0.55	0.0418	0.0084	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.55	0.0502	FALSE	230	198	14	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND6--MT-TE	4	5	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0334	0.0418	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU324_PANCREAS	0.9	1	0.0752	FALSE	499	1288	110	792	0	FALSE	ACH-000933
SNU324_PANCREAS	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0418	0.0084	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU324_PANCREAS	0.67	1	0.0502	FALSE	292	1546	117	613	0	FALSE	ACH-000933
SNU324_PANCREAS	EIF1--RPS28	5	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SNU324_PANCREAS	1	1	0.0418	TRUE	0	0	0	81	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	5	0	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	1	1	0.0418	FALSE	230	193	14	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	5	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	1	1	0.0418	FALSE	231	204	14	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-TA--MT-TN	5	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0418	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU324_PANCREAS	1	1	0.0418	FALSE	369	2501	205	193	0	FALSE	ACH-000933
SNU324_PANCREAS	SLC34A2--MT-CO1	3	7	SLC34A2	12607	chr4:25674854:+	MT-CO1	21720	chrM:7046:+	INCL_NON_REF_SPLICE	YES	3181	24746	0	0	0.0251	0.0585	SLC34A2->Oncogene{Bushman},chr4:25656923-25680370:+,solute_carrier_family_34_member_2,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU324_PANCREAS	0	0	0.0836	FALSE	0	0	0	1	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	3	6	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	13910	0	0	1	0.0251	0.0501	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	1	0.0752	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	3	6	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	14315	0	0	1	0.0251	0.0501	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	1	0.0752	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	3	6	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	13702	168	0	0.05	0.0251	0.0501	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.05	0.0752	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	3	6	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	13881	0	0	1	0.0251	0.0501	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	1	0.0752	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-CO2	4	2	MT-ND4	1222	chrM:10981:+	MT-CO2	5514	chrM:7721:+	INCL_NON_REF_SPLICE	YES	12085	6909	0	0	0.0334	0.0167	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU324_PANCREAS	0	0	0.0501	FALSE	5	1	0	19	0	FALSE	ACH-000933
SNU324_PANCREAS	RP11-123O10.4--GRIP1	4	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0334	0.0167	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU324_PANCREAS	1	1	0.0501	FALSE	93	270	15	244	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-CO1--LCN2	3	5	MT-CO1	1957	chrM:6860:+	LCN2	5914	chr9:130911721:+	INCL_NON_REF_SPLICE	YES	25598	1	0	0.89	0.0251	0.0418	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,LCN2->chr9:130911350-130915734:+,lipocalin_2	SNU324_PANCREAS	0	0.89	0.0669	FALSE	0	5	0	1	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	3	5	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	14226	0	0	1	0.0251	0.0418	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	1	0.0669	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-CO2	4	1	MT-ND4	1209	chrM:10968:+	MT-CO2	5522	chrM:7729:+	INCL_NON_REF_SPLICE	NO	12008	7907	0	0	0.0334	0.0084	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU324_PANCREAS	0	0	0.0418	FALSE	5	1	0	19	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1143	chrM:8669:+	MT-RNR2	5305	chrM:2294:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU324_PANCREAS	1	1	0.0334	FALSE	63	17	1	58	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1132	chrM:8658:+	MT-RNR2	5436	chrM:2425:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU324_PANCREAS	1	1	0.0334	FALSE	63	17	1	58	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND6--MT-TE	3	4	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.0251	0.0334	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU324_PANCREAS	0.7	1	0.0585	FALSE	499	1288	110	792	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND6--MT-TE	3	4	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0251	0.0334	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU324_PANCREAS	0.88	1	0.0585	FALSE	499	1288	110	792	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU324_PANCREAS	1	1	0.0334	FALSE	462	80	0	856	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-TA--MT-TN	4	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU324_PANCREAS	1	1	0.0334	FALSE	369	2501	205	193	0	FALSE	ACH-000933
SNU324_PANCREAS	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0251	0.0334	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU324_PANCREAS	0.88	1	0.0585	FALSE	407	2205	196	549	0	FALSE	ACH-000933
SNU324_PANCREAS	SFN--MT-ATP8	4	0	SFN	1559	chr1:27190191:+	MT-ATP8	5342	chrM:8392:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0334	0	SFN->chr1:27189633-27190947:+,stratifin,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	1	1	0.0334	FALSE	0	0	0	1	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-CO1--LCN2	3	2	MT-CO1	1661	chrM:6564:+	LCN2	5944	chr9:130911751:+	INCL_NON_REF_SPLICE	YES	25388	1	0	0.83	0.0251	0.0167	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,LCN2->chr9:130911350-130915734:+,lipocalin_2	SNU324_PANCREAS	0	0.83	0.0418	FALSE	0	5	0	1	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1521	chrM:11280:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	16409	578	0	0.01	0.0251	0.0167	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.01	0.0418	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	16635	523	0	0.01	0.0251	0.0167	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.01	0.0418	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16846	35	0	0.12	0.0251	0.0167	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.12	0.0418	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	3	2	MT-ND4	1534	chrM:11293:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	16846	168	0	0.03	0.0251	0.0167	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.03	0.0418	FALSE	231	217	16	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-CO2	3	2	MT-ND4	1214	chrM:10973:+	MT-CO2	5506	chrM:7713:+	INCL_NON_REF_SPLICE	YES	12011	4664	0	0	0.0251	0.0167	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU324_PANCREAS	0	0	0.0418	FALSE	5	1	0	19	0	FALSE	ACH-000933
SNU324_PANCREAS	MAEA--CTBP1	3	1	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	8	23	0.33	0.15	0.0251	0.0084	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	SNU324_PANCREAS	0.15	0.33	0.0335	TRUE	3	14	2	43	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	3	1	MT-ND4	1152	chrM:10911:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	9383	5	0	0.44	0.0251	0.0084	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0.44	0.0335	FALSE	230	193	14	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	3	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	12197	0	0	1	0.0251	0.0084	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	1	0.0335	FALSE	231	204	14	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-ATP8	3	1	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	13714	1824	0	0	0.0251	0.0084	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	0	0	0.0335	FALSE	231	205	14	283	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ND4--MT-CO2	3	1	MT-ND4	1293	chrM:11052:+	MT-CO2	5723	chrM:7930:+	INCL_NON_REF_SPLICE	YES	14389	22017	0	0	0.0251	0.0084	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU324_PANCREAS	0	0	0.0335	FALSE	5	1	0	19	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-TA--MT-TC	3	1	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0.0084	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU324_PANCREAS	1	1	0.0335	FALSE	462	80	0	856	0	FALSE	ACH-000933
SNU324_PANCREAS	EIF1--MT-ATP8	3	0	EIF1	1172	chr17:39845308:+	MT-ATP8	7826	chrM:8407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	1	1	0.0251	FALSE	0	0	0	1	0	FALSE	ACH-000933
SNU324_PANCREAS	EIF1--RPS28	3	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SNU324_PANCREAS	1	1	0.0251	TRUE	0	0	0	81	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU324_PANCREAS	1	1	0.0251	FALSE	63	17	1	58	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU324_PANCREAS	1	1	0.0251	FALSE	63	17	1	58	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU324_PANCREAS	1	1	0.0251	FALSE	63	17	1	58	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU324_PANCREAS	1	1	0.0251	FALSE	63	17	1	58	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU324_PANCREAS	1	1	0.0251	FALSE	189	492	56	216	0	FALSE	ACH-000933
SNU324_PANCREAS	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU324_PANCREAS	1	1	0.0251	FALSE	369	2501	205	193	0	FALSE	ACH-000933
SNU324_PANCREAS	SFN--MT-ATP8	3	0	SFN	1598	chr1:27190230:+	MT-ATP8	5376	chrM:8426:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0251	0	SFN->chr1:27189633-27190947:+,stratifin,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU324_PANCREAS	1	1	0.0251	FALSE	0	0	0	1	0	FALSE	ACH-000933
SNU324_PANCREAS	WTAPP1--RUVBL1	3	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	SNU324_PANCREAS	1	1	0.0251	TRUE	9	252	6	66	0	FALSE	ACH-000933
SNU324_PANCREAS	HERC1--DAPK2	2	1	HERC1	1116	chr15:64126026:-	DAPK2	98965	chr15:64222654:-	ONLY_REF_SPLICE	YES	6	7	0.33	0.3	0.0167	0.0084	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:1],LOCAL_REARRANGEMENT:-:[73094],HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,DAPK2->chr15:64199235-64364232:-,death-associated_protein_kinase_2	SNU324_PANCREAS	0.3	0.33	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	ARHGEF7--GJB2	2	0	ARHGEF7	9993	chr13:111857720:+	GJB2	43047	chr13:20763742:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,GJB2->chr13:20761609-20767037:-,gap_junction_protein_beta_2	SNU324_PANCREAS	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	C7orf50--GET4	2	0	C7orf50	3078	chr7:1166893:-	GET4	22147	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	SNU324_PANCREAS	1	1	0.0167	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	SNU324_PANCREAS	1	1	0.0167	TRUE	2	8	0	24	0	FALSE	ACH-000933
SNU324_PANCREAS	CMTM8--CMTM7	2	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	SNU324_PANCREAS	1	1	0.0167	FALSE	118	557	29	88	0	FALSE	ACH-000933
SNU324_PANCREAS	HDLBP--PASK	2	0	HDLBP	2464	chr2:242254985:-	PASK	57319	chr2:242054828:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	NEIGHBORS[77000],HDLBP->Oncogene{Bushman},chr2:242166679-242256476:-,high_density_lipoprotein_binding_protein,PASK->PAS_domain_containing_serine/threonine_kinase,chr2:242045514-242089679:-	SNU324_PANCREAS	1	1	0.0167	FALSE	0	0	0	3	0	FALSE	ACH-000933
SNU324_PANCREAS	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0084	0.0334	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU324_PANCREAS	1	1	0.0418	FALSE	467	2173	244	435	0	FALSE	ACH-000933
SNU324_PANCREAS	SCARB1--UBC	2	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0167	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SNU324_PANCREAS	1	1	0.0167	TRUE	55	66	6	101	0	FALSE	ACH-000933
SNU324_PANCREAS	IP6K1--CAMKV	1	3	IP6K1	1189	chr3:49823787:-	CAMKV	16140	chr3:49899835:-	ONLY_REF_SPLICE	YES	75	0	0.05	1	0.0084	0.0251	LOCAL_REARRANGEMENT:-:[71446],IP6K1->chr3:49761727-49823975:-,inositol_hexakisphosphate_kinase_1,CAMKV->CaM_kinase_like_vesicle_associated,chr3:49895421-49907655:-	SNU324_PANCREAS	0.05	1	0.0335	TRUE	0	0	0	1	0	TRUE	ACH-000933
SNU324_PANCREAS	NRIP1--AF127936.7	1	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	38	0	0.1	1	0.0084	0.0251	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU324_PANCREAS	0.1	1	0.0335	FALSE	164	806	69	479	0	FALSE	ACH-000933
SNU324_PANCREAS	NRIP1--AF127936.7	1	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	31	0	0.11	1	0.0084	0.0251	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU324_PANCREAS	0.11	1	0.0335	FALSE	125	705	46	456	0	FALSE	ACH-000933
SNU324_PANCREAS	BNIP2--ANXA2	1	2	BNIP2	1400	chr15:59981334:-	ANXA2	31755	chr15:60678285:-	ONLY_REF_SPLICE	YES	101	253	0.03	0.01	0.0084	0.0167	BNIP2->BCL2/adenovirus_E1B_19kDa_interacting_protein_2,chr15:59951345-59981733:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	SNU324_PANCREAS	0.01	0.03	0.0251	FALSE	0	0	0	2	0	FALSE	ACH-000933
SNU324_PANCREAS	BNIP2--ANXA2	1	2	BNIP2	1400	chr15:59981334:-	ANXA2	37731	chr15:60656722:-	ONLY_REF_SPLICE	YES	101	2402	0.03	0	0.0084	0.0167	BNIP2->BCL2/adenovirus_E1B_19kDa_interacting_protein_2,chr15:59951345-59981733:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	SNU324_PANCREAS	0	0.03	0.0251	FALSE	0	2	0	6	0	FALSE	ACH-000933
SNU324_PANCREAS	NAMPT--HMGA1P4	1	1	NAMPT	6213	chr7:105915392:-	HMGA1P4	23248	chr9:131425679:-	ONLY_REF_SPLICE	YES	1297	1	0	0.67	0.0084	0.0084	NAMPT->chr7:105888731-105926772:-,nicotinamide_phosphoribosyltransferase,HMGA1P4->chr9:131425413-131425857:-,high_mobility_group_AT-hook_1_pseudogene_4	SNU324_PANCREAS	0	0.67	0.0168	FALSE	0	0	0	1	0	FALSE	ACH-000933
SNU324_PANCREAS	NAPG--TGIF1	1	1	NAPG	1254	chr18:10526155:+	TGIF1	30032	chr18:3456352:+	ONLY_REF_SPLICE	YES	59	208	0.03	0.01	0.0084	0.0084	NAPG->NSF_attachment_protein_gamma,chr18:10525902-10552758:+,TGIF1->TGFB_induced_factor_homeobox_1,chr18:3411606-3458409:+	SNU324_PANCREAS	0.01	0.03	0.0168	FALSE	0	0	0	1	0	FALSE	ACH-000933
SNU324_PANCREAS	NDUFA4--PHF14	1	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	NO	1149	76	0	0.03	0.0084	0.0084	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	SNU324_PANCREAS	0	0.03	0.0168	FALSE	19	32	3	60	0	FALSE	ACH-000933
SNU324_PANCREAS	SERPINB8--ATXN10	1	1	SERPINB8	7371	chr18:61652479:+	ATXN10	30936	chr22:46202839:+	ONLY_REF_SPLICE	NO	59	288	0.03	0.01	0.0084	0.0084	SERPINB8->chr18:61637159-61672278:+,serpin_family_B_member_8,ATXN10->ataxin_10,chr22:46067678-46241187:+	SNU324_PANCREAS	0.01	0.03	0.0168	FALSE	0	0	0	1	0	FALSE	ACH-000933
SNU324_PANCREAS	SPAG9--NME2	1	1	SPAG9	1512	chr17:49197715:-	NME2	53943	chr17:49247298:+	ONLY_REF_SPLICE	YES	33	1534	0.06	0	0.0084	0.0084	LOCAL_INVERSION:-:+:[32725],SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,NME2->NME/NM23_nucleoside_diphosphate_kinase_2,chr17:49230951-49249105:+	SNU324_PANCREAS	0	0.06	0.0168	FALSE	0	1	0	2	0	FALSE	ACH-000933
SNU324_PANCREAS	SPAG9--NME2	1	1	SPAG9	1512	chr17:49197715:-	NME2	49496	chr17:49237341:+	ONLY_REF_SPLICE	YES	33	726	0.06	0	0.0084	0.0084	LOCAL_INVERSION:-:+:[32725],SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,NME2->NME/NM23_nucleoside_diphosphate_kinase_2,chr17:49230951-49249105:+	SNU324_PANCREAS	0	0.06	0.0168	FALSE	0	0	0	2	0	FALSE	ACH-000933
SNU324_PANCREAS	WDR37--ZMYND11	1	1	WDR37	2669	chr10:1102908:+	ZMYND11	26026	chr10:225934:+	ONLY_REF_SPLICE	YES	12	9	0.14	0.18	0.0084	0.0084	WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+,ZMYND11->chr10:180405-300577:+,zinc_finger_MYND-type_containing_11	SNU324_PANCREAS	0.14	0.18	0.0168	TRUE	0	0	0	2	0	TRUE	ACH-000933
TE9_OESOPHAGUS	USP12--RP11-417J8.1	133	44	USP12	2386	chr13:27690653:-	RP11-417J8.1	16817	chr1:142557333:+	ONLY_REF_SPLICE	YES	29	1	0.86	0.99	1.4324	0.4739	USP12->chr13:27640293-27746033:-,ubiquitin_specific_peptidase_12,RP11-417J8.1->chr1:142553293-142559170:+	TE9_OESOPHAGUS	0.86	0.99	1.9063	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	MT-ND4--MT-ATP8	120	4	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	25112	1572	0	0.07	1.2924	0.0431	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE9_OESOPHAGUS	0	0.07	1.3355	FALSE	231	217	16	283	0	FALSE	ACH-000694
TE9_OESOPHAGUS	AC104389.28--HBE1	82	55	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	54	0	0.72	1	0.8831	0.5924	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	TE9_OESOPHAGUS	0.72	1	1.4755	TRUE	0	48	0	65	48	FALSE	ACH-000694
TE9_OESOPHAGUS	TIMM23B--LINC00843	78	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8401	0.3554	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TE9_OESOPHAGUS	0.99	1	1.1955	TRUE	508	994	45	981	0	FALSE	ACH-000694
TE9_OESOPHAGUS	USP15--MON2	83	10	USP15	1166	chr12:62654284:+	MON2	39881	chr12:62877950:+	ONLY_REF_SPLICE	YES	4	45	0.96	0.67	0.8939	0.1077	NEIGHBORS[49386],USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,MON2->MON2_homolog,_regulator_of_endosome-to-Golgi_trafficking,chr12:62860597-62991363:+	TE9_OESOPHAGUS	0.67	0.96	1.0016	FALSE	0	1	0	1	0	FALSE	ACH-000694
TE9_OESOPHAGUS	SPAG16--AC016723.4	51	29	SPAG16	4714	chr2:214162081:+	AC016723.4	37815	chr2:168671741:-	ONLY_REF_SPLICE	YES	24	0	0.77	1	0.5493	0.3123	SPAG16->chr2:214149113-215275225:+,sperm_associated_antigen_16,AC016723.4->chr2:168671284-168797654:-	TE9_OESOPHAGUS	0.77	1	0.8616	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	TIMM23--RP11-464F9.1	39	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	237	7	0.15	0.86	0.42	0.0323	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	TE9_OESOPHAGUS	0.15	0.86	0.4523	TRUE	519	3926	326	965	0	FALSE	ACH-000694
TE9_OESOPHAGUS	GLTSCR2--SHANK2	31	20	GLTSCR2	10077	chr19:48260001:+	SHANK2	66390	chr11:70319544:-	ONLY_REF_SPLICE	YES	0	1	1	0.98	0.3339	0.2154	GLTSCR2->Oncogene{Bushman},chr19:48248779-48260315:+,glioma_tumor_suppressor_candidate_region_gene_2,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	TE9_OESOPHAGUS	0.98	1	0.5493	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	PLGRKT--IL33	30	22	PLGRKT	3397	chr9:5431897:-	IL33	13133	chr9:6241684:+	ONLY_REF_SPLICE	YES	2	0	0.96	1	0.3231	0.2369	PLGRKT->chr9:5357973-5437878:-,plasminogen_receptor_with_a_C-terminal_lysine,IL33->chr9:6215805-6257983:+,interleukin_33	TE9_OESOPHAGUS	0.96	1	0.56	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	MT-ND6--MT-TE	26	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.28	0.0108	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE9_OESOPHAGUS	0.96	1	0.2908	FALSE	499	1288	110	792	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-CO3--MT-ATP6	10	58	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	9	0.93	0.88	0.1077	0.6247	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TE9_OESOPHAGUS	0.88	0.93	0.7324	FALSE	189	492	56	216	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-TA--MT-TC	21	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2262	0.0323	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE9_OESOPHAGUS	1	1	0.2585	FALSE	462	80	0	856	0	FALSE	ACH-000694
TE9_OESOPHAGUS	AC104389.28--HBE1	7	57	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	54	0	0.54	1	0.0754	0.6139	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	TE9_OESOPHAGUS	0.54	1	0.6893	TRUE	0	35	0	55	35	FALSE	ACH-000694
TE9_OESOPHAGUS	ELF2--UGT8	17	15	ELF2	3575	chr4:140058784:-	UGT8	27797	chr4:115540579:+	ONLY_REF_SPLICE	YES	32	59	0.5	0.35	0.1831	0.1616	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,UGT8->UDP_glycosyltransferase_8,chr4:115519611-115599380:+	TE9_OESOPHAGUS	0.35	0.5	0.3447	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	USP15--MON2	19	7	USP15	1166	chr12:62654284:+	MON2	42026	chr12:62887695:+	ONLY_REF_SPLICE	YES	4	32	0.87	0.45	0.2046	0.0754	NEIGHBORS[49386],USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,MON2->MON2_homolog,_regulator_of_endosome-to-Golgi_trafficking,chr12:62860597-62991363:+	TE9_OESOPHAGUS	0.45	0.87	0.28	FALSE	0	0	0	1	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-CO3--MT-ATP6	3	63	MT-CO3	1138	chrM:9344:+	MT-ATP6	5026	chrM:8768:+	INCL_NON_REF_SPLICE	YES	5	37	0.93	0.64	0.0323	0.6785	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TE9_OESOPHAGUS	0.64	0.93	0.7108	FALSE	189	492	56	216	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-CO3--MT-ATP6	3	56	MT-CO3	1099	chrM:9305:+	MT-ATP6	5328	chrM:9070:+	INCL_NON_REF_SPLICE	YES	4	9	0.94	0.87	0.0323	0.6031	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TE9_OESOPHAGUS	0.87	0.94	0.6354	FALSE	189	492	56	216	0	FALSE	ACH-000694
TE9_OESOPHAGUS	PCAT1--RP11-382A18.2	16	3	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1723	0.0323	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	TE9_OESOPHAGUS	1	1	0.2046	TRUE	4	84	1	46	0	FALSE	ACH-000694
TE9_OESOPHAGUS	TMX2--SMTNL1	14	8	TMX2	2269	chr11:57505140:+	SMTNL1	9627	chr11:57310114:+	ONLY_REF_SPLICE	YES	542	0	0.04	1	0.1508	0.0862	{Klijn_CCL:Stomach=1},TMX2->chr11:57480072-57508445:+,thioredoxin_related_transmembrane_protein_2,SMTNL1->chr11:57308979-57318108:+,smoothelin-like_1	TE9_OESOPHAGUS	0.04	1	0.237	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	MT-CO3--MT-ATP6	3	45	MT-CO3	1061	chrM:9267:+	MT-ATP6	5343	chrM:9085:+	INCL_NON_REF_SPLICE	YES	1	6	0.98	0.89	0.0323	0.4847	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TE9_OESOPHAGUS	0.89	0.98	0.517	FALSE	189	492	56	216	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND6--MT-TE	13	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.14	0.0323	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE9_OESOPHAGUS	0.94	1	0.1723	FALSE	499	1288	110	792	0	FALSE	ACH-000694
TE9_OESOPHAGUS	USP15--MON2	11	10	USP15	1166	chr12:62654284:+	MON2	38803	chr12:62864481:+	ONLY_REF_SPLICE	YES	4	44	0.84	0.32	0.1185	0.1077	NEIGHBORS[49386],USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,MON2->MON2_homolog,_regulator_of_endosome-to-Golgi_trafficking,chr12:62860597-62991363:+	TE9_OESOPHAGUS	0.32	0.84	0.2262	FALSE	0	0	0	1	0	FALSE	ACH-000694
TE9_OESOPHAGUS	USP12--RP11-417J8.1	2	44	USP12	2386	chr13:27690653:-	RP11-417J8.1	15613	chr1:142553293:+	ONLY_REF_SPLICE	YES	29	0	0.61	1	0.0215	0.4739	USP12->chr13:27640293-27746033:-,ubiquitin_specific_peptidase_12,RP11-417J8.1->chr1:142553293-142559170:+	TE9_OESOPHAGUS	0.61	1	0.4954	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	MT-ND6--MT-TE	10	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1077	0.1185	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE9_OESOPHAGUS	0.95	1	0.2262	FALSE	499	1288	110	792	0	FALSE	ACH-000694
TE9_OESOPHAGUS	KRT5--MT-CO3	11	3	KRT5	4002	chr12:52911470:-	MT-CO3	10585	chrM:9678:+	INCL_NON_REF_SPLICE	NO	10302	17091	0	0	0.1185	0.0323	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TE9_OESOPHAGUS	0	0	0.1508	FALSE	0	0	0	4	0	FALSE	ACH-000694
TE9_OESOPHAGUS	SS18L1--LSM14B	8	15	SS18L1	8410	chr20:60739302:+	LSM14B	26404	chr20:60706412:+	ONLY_REF_SPLICE	YES	51	130	0.31	0.15	0.0862	0.1616	LOCAL_REARRANGEMENT:+:[8388],SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,LSM14B->LSM_family_member_14B,chr20:60697517-60710434:+	TE9_OESOPHAGUS	0.15	0.31	0.2478	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	ALDOA--KRT17	11	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1185	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	TE9_OESOPHAGUS	1	1	0.1185	TRUE	0	0	0	10	0	TRUE	ACH-000694
TE9_OESOPHAGUS	MT-TA--MT-TC	10	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1077	0.0431	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE9_OESOPHAGUS	1	1	0.1508	FALSE	462	80	0	856	0	FALSE	ACH-000694
TE9_OESOPHAGUS	RP11-123O10.4--GRIP1	10	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1077	0.0431	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TE9_OESOPHAGUS	1	1	0.1508	FALSE	416	2512	207	587	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND6--MT-ND5	9	6	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	3635	1	0	0.0969	0.0646	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	TE9_OESOPHAGUS	0	1	0.1615	FALSE	101	855	57	72	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND4--MT-ATP8	10	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	18913	2	0	0.85	0.1077	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE9_OESOPHAGUS	0	0.85	0.1185	FALSE	230	193	14	283	0	FALSE	ACH-000694
TE9_OESOPHAGUS	RP11-680G10.1--GSE1	9	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	43	1	0.22	0.0969	0.0323	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TE9_OESOPHAGUS	0.22	1	0.1292	TRUE	465	1949	224	605	0	FALSE	ACH-000694
TE9_OESOPHAGUS	ELF2--UGT8	7	10	ELF2	3575	chr4:140058784:-	UGT8	29412	chr4:115544035:+	ONLY_REF_SPLICE	YES	32	59	0.35	0.22	0.0754	0.1077	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,UGT8->UDP_glycosyltransferase_8,chr4:115519611-115599380:+	TE9_OESOPHAGUS	0.22	0.35	0.1831	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	8	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	4	1	0.75	0.92	0.0862	0.0431	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	TE9_OESOPHAGUS	0.75	0.92	0.1293	FALSE	33	240	4	98	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND4--MT-ATP8	8	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	25324	3	0	0.8	0.0862	0.0431	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE9_OESOPHAGUS	0	0.8	0.1293	FALSE	231	217	16	283	0	FALSE	ACH-000694
TE9_OESOPHAGUS	RP11-680G10.1--GSE1	8	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.63	0.0862	0.0431	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TE9_OESOPHAGUS	0.63	1	0.1293	TRUE	458	1351	185	561	0	FALSE	ACH-000694
TE9_OESOPHAGUS	HSP90AB1--MT-RNR2	8	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4451	0	0	1	0.0862	0.0323	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE9_OESOPHAGUS	0	1	0.1185	FALSE	13	9	0	364	0	FALSE	ACH-000694
TE9_OESOPHAGUS	USP12--RP11-417J8.1	2	26	USP12	2386	chr13:27690653:-	RP11-417J8.1	17855	chr1:142558448:+	ONLY_REF_SPLICE	YES	29	3	0.49	0.9	0.0215	0.28	USP12->chr13:27640293-27746033:-,ubiquitin_specific_peptidase_12,RP11-417J8.1->chr1:142553293-142559170:+	TE9_OESOPHAGUS	0.49	0.9	0.3015	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	MT-CO3--MT-ATP6	8	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	5	0	0.64	1	0.0862	0.0108	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TE9_OESOPHAGUS	0.64	1	0.097	FALSE	189	492	56	216	0	FALSE	ACH-000694
TE9_OESOPHAGUS	DIP2A--AP000289.6	6	8	DIP2A	9383	chr21:47931527:+	AP000289.6	46046	chr21:34485035:-	ONLY_REF_SPLICE	YES	1	1	0.93	0.93	0.0646	0.0862	DIP2A->chr21:47878812-47989926:+,disco_interacting_protein_2_homolog_A,AP000289.6->chr21:34484005-34496009:-	TE9_OESOPHAGUS	0.93	0.93	0.1508	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	KRT5--MT-CO3	8	0	KRT5	1467	chr12:52914005:-	MT-CO3	10484	chrM:9577:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TE9_OESOPHAGUS	1	1	0.0862	FALSE	0	0	0	18	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE9_OESOPHAGUS	1	1	0.0862	FALSE	462	80	0	856	0	FALSE	ACH-000694
TE9_OESOPHAGUS	NRIP1--AF127936.7	8	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0862	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TE9_OESOPHAGUS	1	1	0.0862	FALSE	292	1546	117	613	0	FALSE	ACH-000694
TE9_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	7	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	1	0.73	0.92	0.0754	0.0431	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE9_OESOPHAGUS	0.73	0.92	0.1185	FALSE	515	4851	409	746	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-CO3--MT-ATP6	6	6	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	9	1	0.57	0.92	0.0646	0.0646	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TE9_OESOPHAGUS	0.57	0.92	0.1292	FALSE	189	492	56	216	0	FALSE	ACH-000694
TE9_OESOPHAGUS	ANKRD11--RP11-104N10.1	7	1	ANKRD11	1317	chr16:89556653:-	RP11-104N10.1	38394	chr16:89570719:-	INCL_NON_REF_SPLICE	YES	1	1	0.89	0.89	0.0754	0.0108	LOCAL_REARRANGEMENT:-:[1456],ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,RP11-104N10.1->chr16:89558425-89570868:-	TE9_OESOPHAGUS	0.89	0.89	0.0862	TRUE	0	1	0	1	1	TRUE	ACH-000694
TE9_OESOPHAGUS	JUP--MT-CO3	6	5	JUP	8242	chr17:39923795:-	MT-CO3	24128	chrM:9574:+	INCL_NON_REF_SPLICE	YES	2606	16855	0	0	0.0646	0.0539	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TE9_OESOPHAGUS	0	0	0.1185	FALSE	0	0	0	33	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ATP6--MT-CO1	7	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0754	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE9_OESOPHAGUS	1	1	0.0754	FALSE	183	104	9	328	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ATP6--MT-CO1	6	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	14894	30295	0	0	0.0646	0.0323	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE9_OESOPHAGUS	0	0	0.0969	FALSE	183	104	9	328	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND6--MT-TE	4	11	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0431	0.1185	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE9_OESOPHAGUS	0.94	1	0.1616	FALSE	499	1288	110	792	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND6--MT-TE	3	15	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0323	0.1616	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE9_OESOPHAGUS	0.95	1	0.1939	FALSE	499	1288	110	792	0	FALSE	ACH-000694
TE9_OESOPHAGUS	DIP2A--AP000289.6	4	10	DIP2A	9383	chr21:47931527:+	AP000289.6	44808	chr21:34486929:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0431	0.1077	DIP2A->chr21:47878812-47989926:+,disco_interacting_protein_2_homolog_A,AP000289.6->chr21:34484005-34496009:-	TE9_OESOPHAGUS	0.93	1	0.1508	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	MT-CO3--MT-ATP6	3	14	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	5	2	0.77	0.89	0.0323	0.1508	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TE9_OESOPHAGUS	0.77	0.89	0.1831	FALSE	189	492	56	216	0	FALSE	ACH-000694
TE9_OESOPHAGUS	PLGRKT--IL33	1	22	PLGRKT	5883	chr9:5381863:-	IL33	13133	chr9:6241684:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0108	0.2369	PLGRKT->chr9:5357973-5437878:-,plasminogen_receptor_with_a_C-terminal_lysine,IL33->chr9:6215805-6257983:+,interleukin_33	TE9_OESOPHAGUS	1	1	0.2477	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	5	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.73	1	0.0539	0.0646	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE9_OESOPHAGUS	0.73	1	0.1185	FALSE	407	2205	196	549	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND4--MT-ATP8	6	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18913	3	0	0.7	0.0646	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE9_OESOPHAGUS	0	0.7	0.0754	FALSE	230	193	14	283	0	FALSE	ACH-000694
TE9_OESOPHAGUS	AC104389.28--HBE1	6	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0646	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	TE9_OESOPHAGUS	1	1	0.0646	TRUE	0	16	0	53	13	FALSE	ACH-000694
TE9_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	5	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	4	0	0.69	1	0.0539	0.0431	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	TE9_OESOPHAGUS	0.69	1	0.097	FALSE	20	187	4	79	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ATP6--MT-CO1	6	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE9_OESOPHAGUS	1	1	0.0646	FALSE	183	104	9	328	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND4--MT-ATP8	5	4	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	24445	834	0	0.01	0.0539	0.0431	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE9_OESOPHAGUS	0	0.01	0.097	FALSE	231	217	16	283	0	FALSE	ACH-000694
TE9_OESOPHAGUS	JUP--MT-CO3	5	3	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	2783	17169	0	0	0.0539	0.0323	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TE9_OESOPHAGUS	0	0	0.0862	FALSE	0	0	0	33	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND4--MT-ATP8	5	3	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	25725	0	0	1	0.0539	0.0323	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE9_OESOPHAGUS	0	1	0.0862	FALSE	231	217	16	283	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND4--MT-ATP8	4	7	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3439	44	0	0.2	0.0431	0.0754	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE9_OESOPHAGUS	0	0.2	0.1185	FALSE	216	209	16	281	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ATP6--MT-CO1	3	10	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	2235	26864	0.01	0	0.0323	0.1077	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE9_OESOPHAGUS	0	0.01	0.14	FALSE	183	104	9	328	0	FALSE	ACH-000694
TE9_OESOPHAGUS	LNPEP--RP11-455B3.1	5	1	LNPEP	1781	chr5:96271878:+	RP11-455B3.1	35564	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0539	0.0108	LNPEP->Oncogene{Bushman},chr5:96271098-96373219:+,leucyl/cystinyl_aminopeptidase,RP11-455B3.1->chr5:97217124-97258399:+	TE9_OESOPHAGUS	0.75	1	0.0647	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	MT-TA--MT-TC	4	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0.0539	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE9_OESOPHAGUS	1	1	0.097	FALSE	462	80	0	856	0	FALSE	ACH-000694
TE9_OESOPHAGUS	USP15--MON2	5	1	USP15	1166	chr12:62654284:+	MON2	49165	chr12:62918295:+	ONLY_REF_SPLICE	YES	4	79	0.6	0.07	0.0539	0.0108	NEIGHBORS[49386],USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,MON2->MON2_homolog,_regulator_of_endosome-to-Golgi_trafficking,chr12:62860597-62991363:+	TE9_OESOPHAGUS	0.07	0.6	0.0647	FALSE	0	0	0	1	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-CO3--MT-ATP6	5	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TE9_OESOPHAGUS	1	1	0.0539	FALSE	189	492	56	216	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-TA--MT-TC	4	4	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0.0431	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	TE9_OESOPHAGUS	1	1	0.0862	FALSE	462	80	0	856	0	FALSE	ACH-000694
TE9_OESOPHAGUS	RP11-120D5.1--MID1	5	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0539	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	TE9_OESOPHAGUS	1	1	0.0539	FALSE	16	356	14	466	0	FALSE	ACH-000694
TE9_OESOPHAGUS	HSP90AB1--MT-RNR2	4	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4496	0	0	1	0.0431	0.0323	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	TE9_OESOPHAGUS	0	1	0.0754	FALSE	13	9	0	364	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND4--MT-ATP8	4	2	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	27750	782	0	0.01	0.0431	0.0215	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE9_OESOPHAGUS	0	0.01	0.0646	FALSE	231	217	16	283	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND4--MT-ATP8	4	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	24476	44	0	0.12	0.0431	0.0215	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE9_OESOPHAGUS	0	0.12	0.0646	FALSE	231	205	14	283	0	FALSE	ACH-000694
TE9_OESOPHAGUS	KRT5--MT-CO3	4	1	KRT5	1489	chr12:52913983:-	MT-CO3	10515	chrM:9608:+	INCL_NON_REF_SPLICE	YES	6692	16771	0	0	0.0431	0.0108	KRT5->chr12:52908359-52914471:-,keratin_5,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	TE9_OESOPHAGUS	0	0	0.0539	FALSE	0	0	0	18	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND4--MT-ATP8	4	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19075	44	0	0.1	0.0431	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE9_OESOPHAGUS	0	0.1	0.0539	FALSE	230	198	14	283	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND4--MT-ATP8	4	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18915	44	0	0.1	0.0431	0.0108	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE9_OESOPHAGUS	0	0.1	0.0539	FALSE	230	198	14	283	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND5--MT-CO2	3	5	MT-ND5	2236	chrM:13572:+	MT-CO2	6035	chrM:7808:+	INCL_NON_REF_SPLICE	YES	3860	16233	0	0	0.0323	0.0539	LOCAL_REARRANGEMENT:+:[4068],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	TE9_OESOPHAGUS	0	0	0.0862	FALSE	11	5	0	10	0	FALSE	ACH-000694
TE9_OESOPHAGUS	EIF1--RPS28	4	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	TE9_OESOPHAGUS	1	1	0.0431	TRUE	0	0	0	81	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ATP6--MT-CO1	4	0	MT-ATP6	1082	chrM:8608:+	MT-CO1	5379	chrM:6601:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE9_OESOPHAGUS	1	1	0.0431	FALSE	183	104	9	328	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ATP6--MT-CO1	4	0	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE9_OESOPHAGUS	1	1	0.0431	FALSE	183	104	9	328	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TE9_OESOPHAGUS	1	1	0.0431	FALSE	189	492	56	216	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TE9_OESOPHAGUS	1	1	0.0431	FALSE	189	492	56	216	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND4--MT-ATP8	4	0	MT-ND4	1112	chrM:10871:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE9_OESOPHAGUS	1	1	0.0431	FALSE	230	193	14	283	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ATP6--MT-CO1	3	2	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	12577	27816	0	0	0.0323	0.0215	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE9_OESOPHAGUS	0	0	0.0538	FALSE	183	104	9	328	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND4--MT-ATP8	3	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	25657	0	0	1	0.0323	0.0215	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE9_OESOPHAGUS	0	1	0.0538	FALSE	231	217	16	283	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND4--MT-ATP8	3	2	MT-ND4	1285	chrM:11044:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	22852	2	0	0.71	0.0323	0.0215	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	TE9_OESOPHAGUS	0	0.71	0.0538	FALSE	231	205	14	283	0	FALSE	ACH-000694
TE9_OESOPHAGUS	RP11-1L12.3--SLC5A12	3	2	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	13	0	0.28	1	0.0323	0.0215	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	TE9_OESOPHAGUS	0.28	1	0.0538	TRUE	3	101	0	60	0	FALSE	ACH-000694
TE9_OESOPHAGUS	KRT4--CTTN	3	1	KRT4	1704	chr12:53207632:-	CTTN	23827	chr11:70269046:+	ONLY_REF_SPLICE	YES	4420	2807	0	0	0.0323	0.0108	GTEx&tcga_normals:1/3694=0.03%,KRT4->chr12:53200333-53208335:-,keratin_4,CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin	TE9_OESOPHAGUS	0	0	0.0431	FALSE	0	0	0	1	0	FALSE	ACH-000694
TE9_OESOPHAGUS	LNPEP--RP11-455B3.1	3	1	LNPEP	1781	chr5:96271878:+	RP11-455B3.1	36702	chr5:97235342:+	ONLY_REF_SPLICE	YES	2	1	0.67	0.8	0.0323	0.0108	LNPEP->Oncogene{Bushman},chr5:96271098-96373219:+,leucyl/cystinyl_aminopeptidase,RP11-455B3.1->chr5:97217124-97258399:+	TE9_OESOPHAGUS	0.67	0.8	0.0431	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	MT-CO3--MT-ATP6	3	1	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	9	0	0.31	1	0.0323	0.0108	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	TE9_OESOPHAGUS	0.31	1	0.0431	FALSE	189	492	56	216	0	FALSE	ACH-000694
TE9_OESOPHAGUS	USP15--MON2	2	5	USP15	1166	chr12:62654284:+	MON2	43127	chr12:62888796:+	ONLY_REF_SPLICE	YES	4	62	0.64	0.1	0.0215	0.0539	NEIGHBORS[49386],USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,MON2->MON2_homolog,_regulator_of_endosome-to-Golgi_trafficking,chr12:62860597-62991363:+	TE9_OESOPHAGUS	0.1	0.64	0.0754	FALSE	0	0	0	1	0	FALSE	ACH-000694
TE9_OESOPHAGUS	AC104389.28--HBE1	3	0	AC104389.28	1093	chr11:5526790:-	HBE1	13750	chr11:5291386:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	TE9_OESOPHAGUS	1	1	0.0323	TRUE	0	16	0	53	13	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ATP6--MT-CO1	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	TE9_OESOPHAGUS	1	1	0.0323	FALSE	183	104	9	328	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND6--MT-ND5	3	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	TE9_OESOPHAGUS	1	1	0.0323	FALSE	101	855	57	72	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND6--MT-TE	3	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE9_OESOPHAGUS	1	1	0.0323	FALSE	499	1288	110	792	0	FALSE	ACH-000694
TE9_OESOPHAGUS	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE9_OESOPHAGUS	1	1	0.0323	FALSE	499	1288	110	792	0	FALSE	ACH-000694
TE9_OESOPHAGUS	NRIP1--AF127936.7	3	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TE9_OESOPHAGUS	1	1	0.0323	FALSE	125	705	46	456	0	FALSE	ACH-000694
TE9_OESOPHAGUS	RNF152--RP11-879F14.1	3	0	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	TE9_OESOPHAGUS	1	1	0.0323	FALSE	119	124	24	18	0	FALSE	ACH-000694
TE9_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0108	0.0862	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE9_OESOPHAGUS	1	1	0.097	FALSE	192	492	57	212	0	FALSE	ACH-000694
TE9_OESOPHAGUS	TET2--PPA2	3	0	TET2	2105	chr4:106068136:+	PPA2	43024	chr4:106320321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Esophagus_-_Mucosa=1,Adipose_-_Subcutaneous=1,Heart_-_Atrial_Appendage=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[89261],TET2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:106067032-106200973:+,tet_methylcytosine_dioxygenase_2,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	TE9_OESOPHAGUS	1	1	0.0323	TRUE	0	1	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	NRIP1--AF127936.7	2	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.25	1	0.0215	0.0323	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TE9_OESOPHAGUS	0.25	1	0.0538	FALSE	164	806	69	479	0	FALSE	ACH-000694
TE9_OESOPHAGUS	RP11-114H21.2--CTB-1I21.1	1	7	RP11-114H21.2	2303	chr5:135840382:+	CTB-1I21.1	8880	chr5:136089504:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0108	0.0754	RP11-114H21.2->chr5:135802366-135855987:+,CTB-1I21.1->chr5:136070616-136090375:+	TE9_OESOPHAGUS	0.8	1	0.0862	TRUE	0	0	0	4	0	TRUE	ACH-000694
TE9_OESOPHAGUS	USP15--MON2	2	3	USP15	1166	chr12:62654284:+	MON2	44259	chr12:62892699:+	ONLY_REF_SPLICE	YES	4	58	0.56	0.08	0.0215	0.0323	NEIGHBORS[49386],USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,MON2->MON2_homolog,_regulator_of_endosome-to-Golgi_trafficking,chr12:62860597-62991363:+	TE9_OESOPHAGUS	0.08	0.56	0.0538	FALSE	0	0	0	1	0	FALSE	ACH-000694
TE9_OESOPHAGUS	USP15--MON2	1	7	USP15	1166	chr12:62654284:+	MON2	40945	chr12:62883816:+	ONLY_REF_SPLICE	YES	4	37	0.67	0.18	0.0108	0.0754	NEIGHBORS[49386],USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,MON2->MON2_homolog,_regulator_of_endosome-to-Golgi_trafficking,chr12:62860597-62991363:+	TE9_OESOPHAGUS	0.18	0.67	0.0862	FALSE	0	0	0	1	0	FALSE	ACH-000694
TE9_OESOPHAGUS	ELF2--UGT8	2	2	ELF2	1252	chr4:140098121:-	UGT8	29412	chr4:115544035:+	ONLY_REF_SPLICE	YES	69	59	0.05	0.06	0.0215	0.0215	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,UGT8->UDP_glycosyltransferase_8,chr4:115519611-115599380:+	TE9_OESOPHAGUS	0.05	0.06	0.043	TRUE	0	0	0	1	0	FALSE	ACH-000694
TE9_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	4	0	0.64	1	0.0108	0.0646	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	TE9_OESOPHAGUS	0.64	1	0.0754	FALSE	275	511	55	178	0	FALSE	ACH-000694
TE9_OESOPHAGUS	AC002066.1--AC073130.1	2	1	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	5	0	0.38	1	0.0215	0.0108	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	TE9_OESOPHAGUS	0.38	1	0.0323	FALSE	0	1	1	30	0	FALSE	ACH-000694
TE9_OESOPHAGUS	ADAP1--SUN1	2	1	ADAP1	9672	chr7:959605:-	SUN1	30181	chr7:888055:+	ONLY_REF_SPLICE	YES	88	275	0.03	0.01	0.0215	0.0108	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	TE9_OESOPHAGUS	0.01	0.03	0.0323	FALSE	0	0	0	2	0	FALSE	ACH-000694
TE9_OESOPHAGUS	CPSF6--ATL2	2	1	CPSF6	11046	chr12:69656342:+	ATL2	37256	chr2:38523255:-	ONLY_REF_SPLICE	YES	193	155	0.02	0.02	0.0215	0.0108	GTEx_v2:{count=2;pct=0.02%;dist=Breast_-_Mammary_Tissue=1,Nerve_-_Tibial=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-	TE9_OESOPHAGUS	0.02	0.02	0.0323	TRUE	0	1	0	1	1	FALSE	ACH-000694
TE9_OESOPHAGUS	DSG3--DSC3	2	1	DSG3	1131	chr18:29027888:+	DSC3	31291	chr18:28588491:-	ONLY_REF_SPLICE	YES	226	342	0.01	0.01	0.0215	0.0108	HGNC_GENEFAM,PROTCLUST,DSG3->chr18:29027758-29058665:+,desmoglein_3,DSC3->chr18:28569974-28622781:-,desmocollin_3	TE9_OESOPHAGUS	0.01	0.01	0.0323	FALSE	0	1	0	1	0	FALSE	ACH-000694
TE9_OESOPHAGUS	RP11-152P17.2--EIF3E	2	1	RP11-152P17.2	1144	chr8:107072609:-	EIF3E	37291	chr8:109215732:-	ONLY_REF_SPLICE	YES	16	782	0.16	0	0.0215	0.0108	RP11-152P17.2->chr8:106792474-107072752:-,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	TE9_OESOPHAGUS	0	0.16	0.0323	FALSE	0	0	0	1	0	FALSE	ACH-000694
TE9_OESOPHAGUS	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0.0108	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	TE9_OESOPHAGUS	1	1	0.0323	TRUE	0	4	1	7	4	TRUE	ACH-000694
TE9_OESOPHAGUS	CNOT1--LARP4	2	0	CNOT1	1159	chr16:58663632:-	LARP4	69590	chr12:50854918:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,LARP4->La_ribonucleoprotein_domain_family_member_4,chr12:50786166-50873787:+	TE9_OESOPHAGUS	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	CTAGE5--PNN	2	0	CTAGE5	18173	chr14:39784003:+	PNN	37277	chr14:39648295:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	LOCAL_REARRANGEMENT:+:[82066],CTAGE5->CTAGE_family_member_5,chr14:39734488-39856156:+,PNN->chr14:39644387-39652422:+,pinin,_desmosome_associated_protein	TE9_OESOPHAGUS	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	CTD-2008L17.1--RP11-456O19.2	1	4	CTD-2008L17.1	3828	chr18:53685010:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	NO	0	1	1	0.83	0.0108	0.0431	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	TE9_OESOPHAGUS	0.83	1	0.0539	FALSE	0	9	1	3	0	FALSE	ACH-000694
TE9_OESOPHAGUS	DPH6-AS1--RP11-684B21.1	2	0	DPH6-AS1	2462	chr15:36004090:+	RP11-684B21.1	9736	chr15:36341303:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	GTEx_FI:{Thyroid=[count:3=pct:1.7],Adrenal_Gland=[count:3=pct:3.5],Heart=[count:3=pct:1.2],Pituitary=[count:2=pct:3.8],Kidney=[count:2=pct:14.3],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6]},DPH6-AS1->DPH6_antisense_RNA_1_(head_to_head),chr15:35838396-36151202:+,RP11-684B21.1->chr15:36338283-36341730:+	TE9_OESOPHAGUS	1	1	0.0215	TRUE	17	119	17	33	0	FALSE	ACH-000694
TE9_OESOPHAGUS	RP1-93I3.1--PLS3	2	0	RP1-93I3.1	1106	chrX:114796953:-	PLS3	11182	chrX:114844555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	NEIGHBORS_OVERLAP:-:+:[1557],RP1-93I3.1->chrX:114752490-114797058:-,PLS3->chrX:114795501-114885181:+,plastin_3	TE9_OESOPHAGUS	1	1	0.0215	FALSE	0	1	0	2	0	FALSE	ACH-000694
TE9_OESOPHAGUS	SRPK2--LMTK2	2	0	SRPK2	20392	chr7:104773238:-	LMTK2	33502	chr7:97766627:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	SRPK2->Oncogene{Bushman},SRSF_protein_kinase_2,chr7:104751151-105039755:-,LMTK2->chr7:97736197-97838945:+,lemur_tyrosine_kinase_2	TE9_OESOPHAGUS	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000694
TE9_OESOPHAGUS	USP15--MON2	2	0	USP15	1166	chr12:62654284:+	MON2	51753	chr12:62926218:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	NEIGHBORS[49386],USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,MON2->MON2_homolog,_regulator_of_endosome-to-Golgi_trafficking,chr12:62860597-62991363:+	TE9_OESOPHAGUS	1	1	0.0215	FALSE	0	0	0	1	0	FALSE	ACH-000694
TE9_OESOPHAGUS	ZNF519--CHMP1A	2	0	ZNF519	2343	chr18:14124349:-	CHMP1A	27273	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Muscularis=1},ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	TE9_OESOPHAGUS	1	1	0.0215	TRUE	1	2	0	4	2	TRUE	ACH-000694
TE9_OESOPHAGUS	CBLL1--BCAP29	1	2	CBLL1	7291	chr7:107395936:+	BCAP29	20737	chr7:107236312:+	ONLY_REF_SPLICE	YES	73	192	0.04	0.02	0.0108	0.0215	CBLL1->Cbl_proto-oncogene_like_1,chr7:107384142-107402112:+,BCAP29->B-cell_receptor-associated_protein_29,chr7:107220422-107269615:+	TE9_OESOPHAGUS	0.02	0.04	0.0323	TRUE	0	0	0	1	0	FALSE	ACH-000694
TE9_OESOPHAGUS	ELF2--UGT8	1	2	ELF2	2337	chr4:140060567:-	UGT8	29412	chr4:115544035:+	ONLY_REF_SPLICE	NO	82	59	0.04	0.05	0.0108	0.0215	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,UGT8->UDP_glycosyltransferase_8,chr4:115519611-115599380:+	TE9_OESOPHAGUS	0.04	0.05	0.0323	TRUE	0	0	0	1	0	FALSE	ACH-000694
TE9_OESOPHAGUS	ADAP1--SUN1	1	1	ADAP1	9672	chr7:959605:-	SUN1	43971	chr7:908986:+	ONLY_REF_SPLICE	NO	88	459	0.02	0	0.0108	0.0108	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	TE9_OESOPHAGUS	0	0.02	0.0216	FALSE	16	22	0	27	0	FALSE	ACH-000694
TE9_OESOPHAGUS	CCND1--CTTN	1	1	CCND1	1425	chr11:69456279:+	CTTN	26000	chr11:70271438:+	ONLY_REF_SPLICE	NO	2258	3267	0	0	0.0108	0.0108	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,CTTN->Oncogene{Bushman},chr11:70244510-70282690:+,cortactin	TE9_OESOPHAGUS	0	0	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000694
TE9_OESOPHAGUS	EXT1--SAMD12	1	1	EXT1	2769	chr8:119122324:-	SAMD12	25699	chr8:119452200:-	ONLY_REF_SPLICE	NO	123	22	0.02	0.08	0.0108	0.0108	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:-:[77606],EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	TE9_OESOPHAGUS	0.02	0.08	0.0216	TRUE	0	2	0	4	0	FALSE	ACH-000694
TE9_OESOPHAGUS	NDUFA4--PHF14	1	1	NDUFA4	1241	chr7:10979643:-	PHF14	26380	chr7:11101418:+	ONLY_REF_SPLICE	YES	954	94	0	0.02	0.0108	0.0108	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	TE9_OESOPHAGUS	0	0.02	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000694
TE9_OESOPHAGUS	RP11-152P17.2--EIF3E	1	1	RP11-152P17.2	1144	chr8:107072609:-	EIF3E	30615	chr8:109241424:-	ONLY_REF_SPLICE	NO	16	711	0.11	0	0.0108	0.0108	RP11-152P17.2->chr8:106792474-107072752:-,EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E	TE9_OESOPHAGUS	0	0.11	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000694
TE9_OESOPHAGUS	SUFU--GBF1	1	1	SUFU	3620	chr10:104309863:+	GBF1	27009	chr10:104111013:+	ONLY_REF_SPLICE	YES	16	74	0.11	0.03	0.0108	0.0108	{Klijn_CCL:Stomach=1},SUFU->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SUFU_negative_regulator_of_hedgehog_signaling,chr10:104263744-104393292:+,GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1	TE9_OESOPHAGUS	0.03	0.11	0.0216	TRUE	0	3	0	1	3	TRUE	ACH-000694
CAL29_URINARY_TRACT	TIMM23B--LINC00843	117	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0418	0.1514	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CAL29_URINARY_TRACT	1	1	1.1932	TRUE	508	994	45	981	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND6--MT-TE	84	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7479	0.0623	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL29_URINARY_TRACT	1	1	0.8102	FALSE	499	1288	110	792	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	TIMM23--RP11-464F9.1	69	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	151	3	0.32	0.96	0.6144	0.0089	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CAL29_URINARY_TRACT	0.32	0.96	0.6233	TRUE	519	3926	326	965	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	9	194	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	25	0	0.89	1	0.0801	1.7274	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.89	1	1.8075	FALSE	344	826	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	5	196	MT-ND4	1209	chrM:10968:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	28	0	0.88	1	0.0445	1.7452	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.88	1	1.7897	FALSE	344	826	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	4	195	MT-ND4	1209	chrM:10968:+	MT-ND4L	5531	chrM:10622:+	INCL_NON_REF_SPLICE	NO	28	1	0.88	0.99	0.0356	1.7363	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.88	0.99	1.7719	FALSE	344	826	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	3	196	MT-ND4	1197	chrM:10956:+	MT-ND4L	5432	chrM:10523:+	INCL_NON_REF_SPLICE	YES	28	0	0.88	1	0.0267	1.7452	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.88	1	1.7719	FALSE	344	826	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	3	196	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	27	0	0.88	1	0.0267	1.7452	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.88	1	1.7719	FALSE	344	827	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	3	196	MT-ND4	1222	chrM:10981:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	27	0	0.88	1	0.0267	1.7452	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.88	1	1.7719	FALSE	344	827	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	3	196	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	28	0	0.88	1	0.0267	1.7452	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.88	1	1.7719	FALSE	344	826	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	KANSL1--ARL17B	47	19	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	16	23	0.8	0.74	0.4185	0.1692	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	CAL29_URINARY_TRACT	0.74	0.8	0.5877	TRUE	181	1564	124	196	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	18	135	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	4325	1	0.03	0.99	0.1603	1.202	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.03	0.99	1.3623	FALSE	344	827	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	3	193	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	23	1	0.89	0.99	0.0267	1.7184	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.89	0.99	1.7451	FALSE	344	826	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND6--MT-TE	45	21	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.94	1	0.4007	0.187	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL29_URINARY_TRACT	0.94	1	0.5877	FALSE	499	1288	110	792	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND6--MT-TE	48	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4274	0.0623	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL29_URINARY_TRACT	1	1	0.4897	FALSE	499	1288	110	792	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	CDCA5--OR5B12	40	17	CDCA5	3350	chr11:64846825:-	OR5B12	11557	chr11:58207643:-	INCL_NON_REF_SPLICE	YES	140	0	0.29	1	0.3562	0.1514	CDCA5->cell_division_cycle_associated_5,chr11:64833772-64851636:-,OR5B12->chr11:58206593-58207646:-,olfactory_receptor_family_5_subfamily_B_member_12	CAL29_URINARY_TRACT	0.29	1	0.5076	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	3	164	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	11	1	0.94	0.99	0.0267	1.4602	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.94	0.99	1.4869	FALSE	344	826	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	4	134	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	28	1	0.83	0.99	0.0356	1.1931	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.83	0.99	1.2287	FALSE	344	826	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	RP11-123O10.4--GRIP1	36	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3205	0.0356	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CAL29_URINARY_TRACT	1	1	0.3561	FALSE	416	2512	207	587	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-TA--MT-TC	32	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2849	0.0712	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL29_URINARY_TRACT	1	1	0.3561	FALSE	462	80	0	856	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	3	98	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	27	0	0.79	1	0.0267	0.8726	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.79	1	0.8993	FALSE	344	826	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	PC--AP000439.1	27	1	PC	3864	chr11:66719901:-	AP000439.1	24552	chr11:69242131:+	ONLY_REF_SPLICE	YES	10	0	0.74	1	0.2404	0.0089	PC->chr11:66615704-66725847:-,pyruvate_carboxylase,AP000439.1->chr11:69240458-69244389:+	CAL29_URINARY_TRACT	0.74	1	0.2493	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	HSP90AB1--MT-RNR2	24	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2353	0	0.01	1	0.2137	0.0089	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL29_URINARY_TRACT	0.01	1	0.2226	FALSE	13	9	0	364	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	C15orf57--CBX3	21	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	26	36	0.55	0.47	0.187	0.0979	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CAL29_URINARY_TRACT	0.47	0.55	0.2849	TRUE	267	562	48	632	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	HSP90AB1--MT-RNR2	22	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2379	0	0.01	1	0.1959	0.0089	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CAL29_URINARY_TRACT	0.01	1	0.2048	FALSE	13	9	0	364	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	9	42	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	9915	0	0.01	1	0.0801	0.374	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.01	1	0.4541	FALSE	328	800	43	304	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	3	61	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	10	0	0.86	1	0.0267	0.5431	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.86	1	0.5698	FALSE	344	821	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	10	27	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	27	0	0.58	1	0.089	0.2404	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.58	1	0.3294	FALSE	344	826	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	10	27	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	208	0	0.15	1	0.089	0.2404	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.15	1	0.3294	FALSE	344	827	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	5	41	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	29	0	0.61	1	0.0445	0.3651	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.61	1	0.4096	FALSE	344	826	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	4	43	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	5	0	0.9	1	0.0356	0.3829	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.9	1	0.4185	FALSE	344	821	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	7	29	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	9	0	0.8	1	0.0623	0.2582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.8	1	0.3205	FALSE	344	821	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND6--MT-TE	3	44	MT-ND6	1262	chrM:14412:-	MT-TE	4528	chrM:14740:-	INCL_NON_REF_SPLICE	YES	7	0	0.87	1	0.0267	0.3918	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL29_URINARY_TRACT	0.87	1	0.4185	FALSE	499	1288	110	792	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	3	42	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	7262	0	0.01	1	0.0267	0.374	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.01	1	0.4007	FALSE	344	827	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	3	42	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	32	0	0.58	1	0.0267	0.374	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.58	1	0.4007	FALSE	344	827	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND6--MT-TE	5	33	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.0445	0.2938	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL29_URINARY_TRACT	0.9	1	0.3383	FALSE	499	1288	110	792	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	TMEM134--CABP4	11	8	TMEM134	2772	chr11:67234972:-	CABP4	11272	chr11:67222905:+	ONLY_REF_SPLICE	YES	294	23	0.06	0.45	0.0979	0.0712	LOCAL_INVERSION:-:+:[5125],TMEM134->chr11:67231824-67236743:-,transmembrane_protein_134,CABP4->calcium_binding_protein_4,chr11:67219877-67226699:+	CAL29_URINARY_TRACT	0.06	0.45	0.1691	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	7	23	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	27	0	0.53	1	0.0623	0.2048	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.53	1	0.2671	FALSE	344	826	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	C15orf57--CBX3	11	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	27	37	0.39	0.31	0.0979	0.0534	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CAL29_URINARY_TRACT	0.31	0.39	0.1513	TRUE	267	562	48	632	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND6--MT-TE	4	33	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	5	0	0.88	1	0.0356	0.2938	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL29_URINARY_TRACT	0.88	1	0.3294	FALSE	499	1288	110	792	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-TA--MT-TC	10	8	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.089	0.0712	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL29_URINARY_TRACT	1	1	0.1602	FALSE	462	80	0	856	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ATP6--MT-CO1	11	3	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9084	20575	0	0	0.0979	0.0267	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL29_URINARY_TRACT	0	0	0.1246	FALSE	183	104	9	328	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	5	27	MT-ND4	1303	chrM:11062:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	35	0	0.48	1	0.0445	0.2404	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.48	1	0.2849	FALSE	344	827	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	5	27	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	28	0	0.53	1	0.0445	0.2404	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.53	1	0.2849	FALSE	344	826	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ATP6--MT-CO1	9	9	MT-ATP6	1567	chrM:9093:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	1884	18853	0.01	0	0.0801	0.0801	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL29_URINARY_TRACT	0	0.01	0.1602	FALSE	183	104	9	328	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ATP8	11	1	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	12315	1403	0	0.01	0.0979	0.0089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL29_URINARY_TRACT	0	0.01	0.1068	FALSE	231	205	14	283	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND6--MT-TE	4	29	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	5	0	0.87	1	0.0356	0.2582	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL29_URINARY_TRACT	0.87	1	0.2938	FALSE	499	1288	110	792	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND5--MT-ND6	10	4	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	3810	1	0	0.089	0.0356	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	CAL29_URINARY_TRACT	0	1	0.1246	FALSE	26	124	4	93	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND6--MT-TE	4	27	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0.2404	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL29_URINARY_TRACT	1	1	0.276	FALSE	499	1288	110	792	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	10	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.089	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	1	1	0.089	FALSE	344	821	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.089	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CAL29_URINARY_TRACT	1	1	0.089	TRUE	0	0	0	434	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ATP6--MT-CO1	9	3	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	9028	20231	0	0	0.0801	0.0267	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL29_URINARY_TRACT	0	0	0.1068	FALSE	183	104	9	328	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	3	27	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	32	0	0.48	1	0.0267	0.2404	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.48	1	0.2671	FALSE	344	827	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	3	26	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	12	0	0.71	1	0.0267	0.2315	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.71	1	0.2582	FALSE	344	826	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND6--MT-TE	4	21	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.0356	0.187	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL29_URINARY_TRACT	0.86	1	0.2226	FALSE	499	1288	110	792	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND6--MT-TE	3	24	MT-ND6	1199	chrM:14475:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	5	0	0.84	1	0.0267	0.2137	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL29_URINARY_TRACT	0.84	1	0.2404	FALSE	499	1288	110	792	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	5	15	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	32	0	0.38	1	0.0445	0.1336	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.38	1	0.1781	FALSE	344	827	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	NRIP1--AF127936.7	8	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0712	0.0178	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL29_URINARY_TRACT	1	1	0.089	FALSE	292	1546	117	613	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ATP6--MT-CO1	6	9	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	11196	0	0	1	0.0534	0.0801	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL29_URINARY_TRACT	0	1	0.1335	FALSE	182	97	9	327	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ATP8	8	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	9718	23	0	0.28	0.0712	0.0089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL29_URINARY_TRACT	0	0.28	0.0801	FALSE	230	193	14	283	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ATP8	7	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10618	27	0	0.23	0.0623	0.0089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL29_URINARY_TRACT	0	0.23	0.0712	FALSE	231	205	14	283	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ATP6--MT-CO1	6	4	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9174	20662	0	0	0.0534	0.0356	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL29_URINARY_TRACT	0	0	0.089	FALSE	183	104	9	328	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	6	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0534	0.0356	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL29_URINARY_TRACT	1	1	0.089	FALSE	407	2205	196	549	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	6	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.9	0.0534	0.0267	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL29_URINARY_TRACT	0.9	1	0.0801	FALSE	515	4851	409	746	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ATP8	6	2	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4464	65	0	0.11	0.0534	0.0178	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL29_URINARY_TRACT	0	0.11	0.0712	FALSE	218	210	16	281	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MEST--KRT17	6	1	MEST	6895	chr7:130135279:+	KRT17	19579	chr17:39780814:-	INCL_NON_REF_SPLICE	YES	843	1	0.01	0.88	0.0534	0.0089	MEST->chr7:130126012-130146133:+,mesoderm_specific_transcript,KRT17->chr17:39775689-39781094:-,keratin_17	CAL29_URINARY_TRACT	0.01	0.88	0.0623	FALSE	0	0	0	1	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0.0089	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CAL29_URINARY_TRACT	1	1	0.0623	FALSE	462	80	0	856	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ATP6--MT-CO1	4	8	MT-ATP6	1265	chrM:8791:+	MT-CO1	4998	chrM:6220:+	INCL_NON_REF_SPLICE	YES	15584	18559	0	0	0.0356	0.0712	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL29_URINARY_TRACT	0	0	0.1068	FALSE	183	104	9	328	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ATP6--MT-CO1	4	8	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	5774	19205	0	0	0.0356	0.0712	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL29_URINARY_TRACT	0	0	0.1068	FALSE	183	104	9	328	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0534	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL29_URINARY_TRACT	1	1	0.0534	FALSE	499	1288	110	792	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ATP6--MT-CO1	4	7	MT-ATP6	1185	chrM:8711:+	MT-CO1	4986	chrM:6208:+	INCL_NON_REF_SPLICE	NO	12277	19173	0	0	0.0356	0.0623	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL29_URINARY_TRACT	0	0	0.0979	FALSE	183	104	9	328	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	5	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.8	0.0445	0.0267	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	0.8	1	0.0712	FALSE	344	821	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND6--MT-TE	4	7	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0356	0.0623	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL29_URINARY_TRACT	0.92	1	0.0979	FALSE	499	1288	110	792	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ATP8	5	2	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2271	65	0	0.1	0.0445	0.0178	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL29_URINARY_TRACT	0	0.1	0.0623	FALSE	216	209	16	281	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND6--MT-TE	3	10	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0267	0.089	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL29_URINARY_TRACT	1	1	0.1157	FALSE	499	1288	110	792	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ATP8	5	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	11695	27	0	0.18	0.0445	0.0089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL29_URINARY_TRACT	0	0.18	0.0534	FALSE	231	217	16	283	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND6--MT-TE	5	1	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0445	0.0089	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL29_URINARY_TRACT	1	1	0.0534	FALSE	499	1288	110	792	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND6--MT-TE	3	9	MT-ND6	1149	chrM:14525:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0267	0.0801	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL29_URINARY_TRACT	0.92	1	0.1068	FALSE	499	1288	110	792	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MYH9--MT-ND4	5	1	MYH9	40405	chr22:36678515:-	MT-ND4	45060	chrM:11226:+	INCL_NON_REF_SPLICE	YES	845	12083	0.01	0	0.0445	0.0089	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	CAL29_URINARY_TRACT	0	0.01	0.0534	FALSE	0	0	0	1	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	SLC7A5--MT-ND1	5	1	SLC7A5	13719	chr16:87864490:-	MT-ND1	17596	chrM:3322:+	INCL_NON_REF_SPLICE	YES	1248	0	0	1	0.0445	0.0089	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	CAL29_URINARY_TRACT	0	1	0.0534	FALSE	0	0	0	11	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ATP6--MT-CO1	3	8	MT-ATP6	1462	chrM:8988:+	MT-CO1	5224	chrM:6446:+	INCL_NON_REF_SPLICE	YES	8568	18980	0	0	0.0267	0.0712	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL29_URINARY_TRACT	0	0	0.0979	FALSE	183	104	9	328	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0445	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL29_URINARY_TRACT	1	1	0.0445	FALSE	499	1288	110	792	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ATP6--MT-CO1	4	3	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	8827	20575	0	0	0.0356	0.0267	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL29_URINARY_TRACT	0	0	0.0623	FALSE	183	104	9	328	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND5--MT-ND6	3	7	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0267	0.0623	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	CAL29_URINARY_TRACT	1	1	0.089	FALSE	26	124	4	93	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MTND4P12--MT-CO1	4	3	MTND4P12	1773	chr5:134262954:-	MT-CO1	5915	chrM:6441:+	INCL_NON_REF_SPLICE	YES	6	19233	0.54	0	0.0356	0.0267	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL29_URINARY_TRACT	0	0.54	0.0623	FALSE	10	0	0	6	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ATP6--MT-CO1	3	6	MT-ATP6	1183	chrM:8709:+	MT-CO1	5221	chrM:6443:+	INCL_NON_REF_SPLICE	YES	12344	19072	0	0	0.0267	0.0534	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL29_URINARY_TRACT	0	0	0.0801	FALSE	183	104	9	328	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ATP8	4	2	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	11854	0	0	1	0.0356	0.0178	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL29_URINARY_TRACT	0	1	0.0534	FALSE	231	217	16	283	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	CDCA5--OR5B12	3	5	CDCA5	1801	chr11:64850836:-	OR5B12	11557	chr11:58207643:-	INCL_NON_REF_SPLICE	YES	109	0	0.07	1	0.0267	0.0445	CDCA5->cell_division_cycle_associated_5,chr11:64833772-64851636:-,OR5B12->chr11:58206593-58207646:-,olfactory_receptor_family_5_subfamily_B_member_12	CAL29_URINARY_TRACT	0.07	1	0.0712	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ATP8	4	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9520	27	0	0.16	0.0356	0.0089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL29_URINARY_TRACT	0	0.16	0.0445	FALSE	230	198	14	283	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ATP8	4	1	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11290	65	0	0.07	0.0356	0.0089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL29_URINARY_TRACT	0	0.07	0.0445	FALSE	231	217	16	283	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ATP8	4	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	9718	27	0	0.16	0.0356	0.0089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL29_URINARY_TRACT	0	0.16	0.0445	FALSE	230	193	14	283	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ATP8	3	5	MT-ND4	2258	chrM:12017:+	MT-ATP8	5406	chrM:8393:+	INCL_NON_REF_SPLICE	YES	1555	0	0.01	1	0.0267	0.0445	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL29_URINARY_TRACT	0.01	1	0.0712	FALSE	216	209	16	281	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	RP11-141M1.3--STARD13	4	1	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	12	1	0.29	0.0356	0.0089	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	CAL29_URINARY_TRACT	0.29	1	0.0445	FALSE	49	120	16	70	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MEST--MT-ND5	4	0	MEST	6890	chr7:130135274:+	MT-ND5	20016	chrM:13054:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	MEST->chr7:130126012-130146133:+,mesoderm_specific_transcript,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	CAL29_URINARY_TRACT	1	1	0.0356	FALSE	0	0	0	3	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	4	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	1	1	0.0356	FALSE	344	821	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	NPM1P24--SET	4	0	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CAL29_URINARY_TRACT	1	1	0.0356	TRUE	0	0	0	434	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CAL29_URINARY_TRACT	1	1	0.0356	TRUE	0	0	0	434	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	RP11-624L4.1--RP11-265N7.1	4	0	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0356	0	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	CAL29_URINARY_TRACT	1	1	0.0356	FALSE	0	20	1	20	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ATP6--MT-CO1	3	3	MT-ATP6	1120	chrM:8646:+	MT-CO1	4991	chrM:6213:+	INCL_NON_REF_SPLICE	NO	9067	19061	0	0	0.0267	0.0267	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL29_URINARY_TRACT	0	0	0.0534	FALSE	183	104	9	328	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ATP6--MT-CO1	3	3	MT-ATP6	1400	chrM:8926:+	MT-CO1	5381	chrM:6603:+	INCL_NON_REF_SPLICE	YES	11868	20147	0	0	0.0267	0.0267	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL29_URINARY_TRACT	0	0	0.0534	FALSE	183	104	9	328	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	DOCK4--RP11-513G19.1	3	2	DOCK4	1310	chr7:111846157:-	RP11-513G19.1	66278	chr12:26572341:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0.0178	DOCK4->chr7:111366166-111846466:-,dedicator_of_cytokinesis_4,RP11-513G19.1->chr12:26471886-26574395:+	CAL29_URINARY_TRACT	1	1	0.0445	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	MT-ATP6--MT-CO1	3	2	MT-ATP6	1098	chrM:8624:+	MT-CO1	5629	chrM:6851:+	INCL_NON_REF_SPLICE	YES	8019	22494	0	0	0.0267	0.0178	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	CAL29_URINARY_TRACT	0	0	0.0445	FALSE	183	104	9	328	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	11926	0	0	1	0.0267	0.0178	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL29_URINARY_TRACT	0	1	0.0445	FALSE	231	217	16	283	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MEST--KRT17	3	1	MEST	6912	chr7:130135296:+	KRT17	19594	chr17:39780799:-	INCL_NON_REF_SPLICE	YES	944	5	0	0.44	0.0267	0.0089	MEST->chr7:130126012-130146133:+,mesoderm_specific_transcript,KRT17->chr17:39775689-39781094:-,keratin_17	CAL29_URINARY_TRACT	0	0.44	0.0356	FALSE	0	0	0	1	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ATP8	3	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11482	65	0	0.06	0.0267	0.0089	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CAL29_URINARY_TRACT	0	0.06	0.0356	FALSE	231	217	16	283	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	HNRNPM--DOT1L	3	0	HNRNPM	15001	chr19:8548095:+	DOT1L	49047	chr19:2225387:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0267	0	HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+	CAL29_URINARY_TRACT	1	1	0.0267	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0267	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	1	1	0.0267	FALSE	344	821	44	306	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0267	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CAL29_URINARY_TRACT	1	1	0.0267	FALSE	499	1288	110	792	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	PFKM--MT-ND4L	3	0	PFKM	16513	chr12:48531603:+	MT-ND4L	27661	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0267	0	PFKM->chr12:48498922-48540187:+,phosphofructokinase,_muscle,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CAL29_URINARY_TRACT	1	1	0.0267	FALSE	0	0	0	8	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	LY75--BAZ2B	2	2	LY75	25092	chr2:160706491:-	BAZ2B	54239	chr2:160335232:-	ONLY_REF_SPLICE	YES	24	14	0.14	0.22	0.0178	0.0178	LY75->chr2:160628362-160761260:-,lymphocyte_antigen_75,BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-	CAL29_URINARY_TRACT	0.14	0.22	0.0356	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	ARHGEF4--PTMA	2	0	ARHGEF4	1077	chr2:131594565:+	PTMA	29736	chr2:232576058:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	ARHGEF4->Oncogene{Bushman},Rho_guanine_nucleotide_exchange_factor_4,chr2:131594489-131804836:+,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CAL29_URINARY_TRACT	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	MIR205HG--C9orf3	2	0	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CAL29_URINARY_TRACT	1	1	0.0178	TRUE	86	303	14	25	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	NRIP1--AF127936.7	1	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	18	0	0.22	1	0.0089	0.0356	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL29_URINARY_TRACT	0.22	1	0.0445	FALSE	164	806	69	479	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	QRICH1--RHOA	2	0	QRICH1	1452	chr3:49131345:-	RHOA	21446	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	QRICH1->chr3:49067140-49131796:-,glutamine_rich_1,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	CAL29_URINARY_TRACT	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	RHOBTB3--GNAS	2	0	RHOBTB3	2421	chr5:95053469:+	GNAS	42114	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	RHOBTB3->Rho_related_BTB_domain_containing_3,chr5:95049226-95160087:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	CAL29_URINARY_TRACT	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	VRK2--U2AF1	2	0	VRK2	9971	chr2:58276102:+	U2AF1	37933	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	VRK2->chr2:58134786-58387055:+,vaccinia_related_kinase_2,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	CAL29_URINARY_TRACT	1	1	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	VWDE--PHF14	2	0	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0178	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	CAL29_URINARY_TRACT	1	1	0.0178	TRUE	0	6	0	17	2	TRUE	ACH-000142
CAL29_URINARY_TRACT	NRIP1--AF127936.7	1	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.36	1	0.0089	0.0267	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CAL29_URINARY_TRACT	0.36	1	0.0356	FALSE	125	705	46	456	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	1	1	0.8	0.0089	0.0267	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CAL29_URINARY_TRACT	0.8	1	0.0356	FALSE	467	2173	244	435	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	JMJD1C--REEP3	1	1	JMJD1C	2633	chr10:65140078:-	REEP3	36225	chr10:65326098:+	ONLY_REF_SPLICE	YES	3	31	0.4	0.06	0.0089	0.0089	LOCAL_INVERSION:-:+:[55401],JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C,REEP3->chr10:65281123-65384883:+,receptor_accessory_protein_3	CAL29_URINARY_TRACT	0.06	0.4	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000142
CAL29_URINARY_TRACT	RALY--ITCH	1	1	RALY	1486	chr20:32581937:+	ITCH	19872	chr20:32981597:+	ONLY_REF_SPLICE	YES	613	156	0	0.01	0.0089	0.0089	RALY->RALY_heterogeneous_nuclear_ribonucleoprotein,chr20:32581452-32696114:+,ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase	CAL29_URINARY_TRACT	0	0.01	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	SLC39A11--LINC00511	1	1	SLC39A11	8636	chr17:71027695:-	LINC00511	40306	chr17:70424439:-	ONLY_REF_SPLICE	YES	22	39	0.08	0.05	0.0089	0.0089	NEIGHBORS[5477],SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11,LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511	CAL29_URINARY_TRACT	0.05	0.08	0.0178	FALSE	0	1	0	3	0	FALSE	ACH-000142
CAL29_URINARY_TRACT	TMEM134--CABP4	1	1	TMEM134	2772	chr11:67234972:-	CABP4	11547	chr11:67223180:+	ONLY_REF_SPLICE	YES	294	15	0.01	0.12	0.0089	0.0089	LOCAL_INVERSION:-:+:[5125],TMEM134->chr11:67231824-67236743:-,transmembrane_protein_134,CABP4->calcium_binding_protein_4,chr11:67219877-67226699:+	CAL29_URINARY_TRACT	0.01	0.12	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000142
NCIH2882_LUNG	TIMM23B--LINC00843	114	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1968	0.3569	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2882_LUNG	1	1	1.5537	TRUE	508	994	45	981	0	FALSE	ACH-000700
NCIH2882_LUNG	TIMM23--RP11-464F9.1	65	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	597	4	0.1	0.94	0.6824	0.021	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2882_LUNG	0.1	0.94	0.7034	TRUE	519	3926	326	965	0	FALSE	ACH-000700
NCIH2882_LUNG	ACTN4--CYP2G2P	57	30	ACTN4	1259	chr19:39138547:+	CYP2G2P	29544	chr19:41562771:-	ONLY_REF_SPLICE	YES	4072	5	0.02	0.95	0.5984	0.3149	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,CYP2G2P->chr19:41556354-41568349:-,cytochrome_P450_family_2_subfamily_G_member_2,_pseudogene	NCIH2882_LUNG	0.02	0.95	0.9133	TRUE	0	0	0	1	0	FALSE	ACH-000700
NCIH2882_LUNG	ZNF654--HMGB2	60	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6299	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2882_LUNG	1	1	0.6299	TRUE	0	0	0	518	0	FALSE	ACH-000700
NCIH2882_LUNG	MT-TA--MT-TC	41	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4304	0.063	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2882_LUNG	1	1	0.4934	FALSE	462	80	0	856	0	FALSE	ACH-000700
NCIH2882_LUNG	RP11-204C23.1--RP11-450H5.1	24	27	RP11-204C23.1	2338	chr3:2004084:-	RP11-450H5.1	5763	chr3:166288146:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.252	0.2835	RP11-204C23.1->chr3:2004065-2029154:-,RP11-450H5.1->chr3:166287481-166288551:-	NCIH2882_LUNG	1	1	0.5355	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	RMDN3--INO80	26	18	RMDN3	2255	chr15:41046795:-	INO80	29953	chr15:41352124:-	ONLY_REF_SPLICE	YES	182	28	0.19	0.61	0.273	0.189	RMDN3->chr15:41028082-41048049:-,regulator_of_microtubule_dynamics_3,INO80->INO80_complex_subunit,chr15:41271078-41408552:-	NCIH2882_LUNG	0.19	0.61	0.462	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	RP11-403B2.7--RP11-403B2.6	21	26	RP11-403B2.7	1254	chr15:20961259:-	RP11-403B2.6	7754	chr15:20965236:-	ONLY_REF_SPLICE	YES	5	0	0.9	1	0.2205	0.273	GTEx_FI:{Brain=[count:17=pct:2.6],Esophagus=[count:15=pct:3.7],Blood_Vessel=[count:8=pct:2.2],Skin=[count:7=pct:2.2],Thyroid=[count:5=pct:2.8],Prostate=[count:4=pct:6.6],Lung=[count:4=pct:2.4],Heart=[count:3=pct:1.2],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Nerve=[count:2=pct:1.2],Ovary=[count:2=pct:3.8],Blood=[count:2=pct:1.1],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},LOCAL_REARRANGEMENT:-:[3128],RP11-403B2.7->chr15:20935076-20961512:-,RP11-403B2.6->chr15:20964640-20980123:-	NCIH2882_LUNG	0.9	1	0.4935	TRUE	22	66	5	11	0	FALSE	ACH-000700
NCIH2882_LUNG	ACTN4--CYP2G2P	14	44	ACTN4	1259	chr19:39138547:+	CYP2G2P	27654	chr19:41565343:-	ONLY_REF_SPLICE	YES	4072	3	0.01	0.95	0.147	0.4619	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,CYP2G2P->chr19:41556354-41568349:-,cytochrome_P450_family_2_subfamily_G_member_2,_pseudogene	NCIH2882_LUNG	0.01	0.95	0.6089	TRUE	0	0	0	1	0	FALSE	ACH-000700
NCIH2882_LUNG	ZNF235--AC011526.1	21	15	ZNF235	4334	chr19:44802961:-	AC011526.1	20648	chr19:41985192:-	ONLY_REF_SPLICE	YES	22	0	0.62	1	0.2205	0.1575	ZNF235->chr19:44732882-44809199:-,zinc_finger_protein_235,AC011526.1->chr19:41960074-42006559:-	NCIH2882_LUNG	0.62	1	0.378	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	C15orf57--CBX3	17	24	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	43	104	0.49	0.28	0.1785	0.252	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2882_LUNG	0.28	0.49	0.4305	TRUE	267	562	48	632	0	FALSE	ACH-000700
NCIH2882_LUNG	RP11-204C23.1--RP11-450H5.1	15	32	RP11-204C23.1	2338	chr3:2004084:-	RP11-450H5.1	5360	chr3:166288549:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1575	0.3359	RP11-204C23.1->chr3:2004065-2029154:-,RP11-450H5.1->chr3:166287481-166288551:-	NCIH2882_LUNG	1	1	0.4934	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	KANSL1--ARL17B	16	17	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	32	95	0.51	0.26	0.168	0.1785	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH2882_LUNG	0.26	0.51	0.3465	TRUE	181	1564	124	196	0	FALSE	ACH-000700
NCIH2882_LUNG	RP11-680G10.1--GSE1	18	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	24	1	0.5	0.189	0.063	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2882_LUNG	0.5	1	0.252	TRUE	458	1351	185	561	0	FALSE	ACH-000700
NCIH2882_LUNG	ZNF235--AC011526.1	14	15	ZNF235	4322	chr19:44802973:-	AC011526.1	20648	chr19:41985192:-	INCL_NON_REF_SPLICE	YES	23	0	0.56	1	0.147	0.1575	ZNF235->chr19:44732882-44809199:-,zinc_finger_protein_235,AC011526.1->chr19:41960074-42006559:-	NCIH2882_LUNG	0.56	1	0.3045	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	BBX--DCBLD2	12	12	BBX	4463	chr3:107245245:+	DCBLD2	52451	chr3:98544210:-	ONLY_REF_SPLICE	YES	37	166	0.39	0.13	0.126	0.126	BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2	NCIH2882_LUNG	0.13	0.39	0.252	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	SLC12A4--PRMT7	11	14	SLC12A4	8083	chr16:67991645:-	PRMT7	34936	chr16:68379578:+	ONLY_REF_SPLICE	YES	53	120	0.32	0.17	0.1155	0.147	SLC12A4->chr16:67977377-68003504:-,solute_carrier_family_12_member_4,PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7	NCIH2882_LUNG	0.17	0.32	0.2625	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	RP11-680G10.1--GSE1	12	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	63	1	0.21	0.126	0.0525	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH2882_LUNG	0.21	1	0.1785	TRUE	465	1949	224	605	0	FALSE	ACH-000700
NCIH2882_LUNG	MT-CO3--MT-ATP6	6	28	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	10	0.92	0.77	0.063	0.2939	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2882_LUNG	0.77	0.92	0.3569	FALSE	189	492	56	216	0	FALSE	ACH-000700
NCIH2882_LUNG	ZCCHC10--HSPA4	12	0	ZCCHC10	1108	chr5:132362189:-	HSPA4	13947	chr5:132400672:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.126	0	LOCAL_INVERSION:-:+:[25358],ZCCHC10->chr5:132332677-132362296:-,zinc_finger_CCHC-type_containing_10,HSPA4->chr5:132387654-132442141:+,heat_shock_protein_family_A_(Hsp70)_member_4	NCIH2882_LUNG	1	1	0.126	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	ACTN4--CYP2G2P	3	34	ACTN4	1259	chr19:39138547:+	CYP2G2P	28804	chr19:41563511:-	ONLY_REF_SPLICE	YES	4072	7	0.01	0.84	0.0315	0.3569	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,CYP2G2P->chr19:41556354-41568349:-,cytochrome_P450_family_2_subfamily_G_member_2,_pseudogene	NCIH2882_LUNG	0.01	0.84	0.3884	TRUE	0	0	0	1	0	FALSE	ACH-000700
NCIH2882_LUNG	MT-CO3--MT-ATP6	6	21	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	8	1	0.77	0.063	0.2205	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2882_LUNG	0.77	1	0.2835	FALSE	189	492	56	216	0	FALSE	ACH-000700
NCIH2882_LUNG	VPS35--CMIP	9	9	VPS35	12653	chr16:46705617:-	CMIP	27412	chr16:81641172:+	ONLY_REF_SPLICE	YES	232	58	0.07	0.24	0.0945	0.0945	VPS35->VPS35_retromer_complex_component,chr16:46690054-46723430:-,CMIP->c-Maf_inducing_protein,chr16:81478775-81745367:+	NCIH2882_LUNG	0.07	0.24	0.189	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	C15orf57--CBX3	6	18	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	43	104	0.36	0.19	0.063	0.189	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2882_LUNG	0.19	0.36	0.252	TRUE	267	562	48	632	0	FALSE	ACH-000700
NCIH2882_LUNG	MT-CO3--MT-ATP6	8	10	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.084	0.105	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2882_LUNG	1	1	0.189	FALSE	189	492	56	216	0	FALSE	ACH-000700
NCIH2882_LUNG	MT-CO3--MT-ATP6	4	25	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.91	0.042	0.2625	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2882_LUNG	0.91	1	0.3045	FALSE	189	492	56	216	0	FALSE	ACH-000700
NCIH2882_LUNG	MT-CO3--MT-ATP6	3	28	MT-CO3	1090	chrM:9296:+	MT-ATP6	5050	chrM:8792:+	INCL_NON_REF_SPLICE	YES	0	10	1	0.76	0.0315	0.2939	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2882_LUNG	0.76	1	0.3254	FALSE	189	492	56	216	0	FALSE	ACH-000700
NCIH2882_LUNG	MT-CO3--MT-ATP6	4	23	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	0	14	1	0.66	0.042	0.2415	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2882_LUNG	0.66	1	0.2835	FALSE	189	492	56	216	0	FALSE	ACH-000700
NCIH2882_LUNG	EHMT2--ZBTB12	7	10	EHMT2	2425	chr6:31864040:-	ZBTB12	19449	chr6:31869102:-	ONLY_REF_SPLICE	YES	187	4	0.08	0.81	0.0735	0.105	LOCAL_REARRANGEMENT:-:[1920],EHMT2->chr6:31847536-31865464:-,euchromatic_histone-lysine_N-methyltransferase_2,ZBTB12->chr6:31867384-31869769:-,zinc_finger_and_BTB_domain_containing_12	NCIH2882_LUNG	0.08	0.81	0.1785	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	MT-CO3--MT-ATP6	6	13	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.95	0.063	0.1365	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2882_LUNG	0.95	1	0.1995	FALSE	189	492	56	216	0	FALSE	ACH-000700
NCIH2882_LUNG	RP4-569M23.2--ZMYND8	7	9	RP4-569M23.2	1180	chr20:45981484:+	ZMYND8	11537	chr20:45976670:-	ONLY_REF_SPLICE	YES	0	6	1	0.73	0.0735	0.0945	NEIGHBORS_OVERLAP:+:-:[2072],RP4-569M23.2->chr20:45981305-45983377:+,ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8	NCIH2882_LUNG	0.73	1	0.168	FALSE	0	0	0	1	0	FALSE	ACH-000700
NCIH2882_LUNG	MT-TA--MT-TC	7	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0735	0.063	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2882_LUNG	1	1	0.1365	FALSE	462	80	0	856	0	FALSE	ACH-000700
NCIH2882_LUNG	RP11-476K15.1--CTD-2015H3.2	8	2	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.084	0.021	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCIH2882_LUNG	1	1	0.105	FALSE	0	46	0	73	0	FALSE	ACH-000700
NCIH2882_LUNG	RP11-6N13.1--CTD-2374C24.1	7	6	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0735	0.063	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH2882_LUNG	0.93	1	0.1365	TRUE	5	4	0	46	0	FALSE	ACH-000700
NCIH2882_LUNG	RP11-96H19.1--RP11-446N19.1	7	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.0735	0.063	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2882_LUNG	0.81	1	0.1365	FALSE	515	4851	409	746	0	FALSE	ACH-000700
NCIH2882_LUNG	MT-TA--MT-TC	7	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0735	0.0525	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2882_LUNG	1	1	0.126	FALSE	462	80	0	856	0	FALSE	ACH-000700
NCIH2882_LUNG	RP4-569M23.2--ZMYND8	6	9	RP4-569M23.2	1184	chr20:45981488:+	ZMYND8	11537	chr20:45976670:-	INCL_NON_REF_SPLICE	YES	1	6	0.94	0.71	0.063	0.0945	NEIGHBORS_OVERLAP:+:-:[2072],RP4-569M23.2->chr20:45981305-45983377:+,ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8	NCIH2882_LUNG	0.71	0.94	0.1575	FALSE	0	0	0	1	0	FALSE	ACH-000700
NCIH2882_LUNG	FTH1--ACTB	8	0	FTH1	1222	chr11:61734911:-	ACTB	12534	chr7:5569289:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.084	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH2882_LUNG	1	1	0.084	TRUE	1	0	0	97	0	FALSE	ACH-000700
NCIH2882_LUNG	SERF2--RPL10	4	16	SERF2	6127	chr15:44086011:+	RPL10	18486	chrX:153626838:+	INCL_NON_REF_SPLICE	YES	1908	191	0.01	0.09	0.042	0.168	SERF2->chr15:44069285-44094787:+,small_EDRK-rich_factor_2,RPL10->Oncogene{Bushman},chrX:153618315-153637504:+,ribosomal_protein_L10	NCIH2882_LUNG	0.01	0.09	0.21	TRUE	0	0	0	1	0	FALSE	ACH-000700
NCIH2882_LUNG	C15orf57--CBX3	3	18	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	43	104	0.33	0.17	0.0315	0.189	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2882_LUNG	0.17	0.33	0.2205	TRUE	267	562	48	632	0	FALSE	ACH-000700
NCIH2882_LUNG	SERF2--RPL10	3	17	SERF2	6131	chr15:44086015:+	RPL10	18487	chrX:153626839:+	INCL_NON_REF_SPLICE	YES	1919	215	0.01	0.09	0.0315	0.1785	SERF2->chr15:44069285-44094787:+,small_EDRK-rich_factor_2,RPL10->Oncogene{Bushman},chrX:153618315-153637504:+,ribosomal_protein_L10	NCIH2882_LUNG	0.01	0.09	0.21	TRUE	0	0	0	1	0	FALSE	ACH-000700
NCIH2882_LUNG	FTH1--ACTB	7	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0735	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH2882_LUNG	1	1	0.0735	TRUE	1	0	0	97	0	FALSE	ACH-000700
NCIH2882_LUNG	MT-CO3--MT-ATP6	3	16	MT-CO3	1051	chrM:9257:+	MT-ATP6	5269	chrM:9011:+	INCL_NON_REF_SPLICE	YES	0	13	1	0.59	0.0315	0.168	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2882_LUNG	0.59	1	0.1995	FALSE	189	492	56	216	0	FALSE	ACH-000700
NCIH2882_LUNG	SLC12A4--PRMT7	5	6	SLC12A4	6780	chr16:67995478:-	PRMT7	34936	chr16:68379578:+	ONLY_REF_SPLICE	YES	65	120	0.14	0.08	0.0525	0.063	SLC12A4->chr16:67977377-68003504:-,solute_carrier_family_12_member_4,PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7	NCIH2882_LUNG	0.08	0.14	0.1155	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	CTD-2337A12.1--CAST	5	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	77	1	0.07	0.0525	0.0105	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH2882_LUNG	0.07	1	0.063	TRUE	347	1186	183	220	0	FALSE	ACH-000700
NCIH2882_LUNG	MT-CO3--MT-ATP6	5	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.67	1	0.0525	0.0105	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2882_LUNG	0.67	1	0.063	FALSE	189	492	56	216	0	FALSE	ACH-000700
NCIH2882_LUNG	MT-CO2--MT-ND2	5	0	MT-CO2	1234	chrM:7819:+	MT-ND2	5523	chrM:5308:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0525	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH2882_LUNG	1	1	0.0525	FALSE	105	46	5	21	0	FALSE	ACH-000700
NCIH2882_LUNG	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0525	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2882_LUNG	1	1	0.0525	FALSE	462	80	0	856	0	FALSE	ACH-000700
NCIH2882_LUNG	SERF2--RPL10	3	8	SERF2	6109	chr15:44085993:+	RPL10	18366	chrX:153626718:+	INCL_NON_REF_SPLICE	NO	2300	14	0	0.44	0.0315	0.084	SERF2->chr15:44069285-44094787:+,small_EDRK-rich_factor_2,RPL10->Oncogene{Bushman},chrX:153618315-153637504:+,ribosomal_protein_L10	NCIH2882_LUNG	0	0.44	0.1155	FALSE	0	0	0	1	0	FALSE	ACH-000700
NCIH2882_LUNG	MT-CO2--MT-ND2	4	0	MT-CO2	1276	chrM:7861:+	MT-ND2	5365	chrM:5150:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.042	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH2882_LUNG	1	1	0.042	FALSE	105	46	5	21	0	FALSE	ACH-000700
NCIH2882_LUNG	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.042	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2882_LUNG	1	1	0.042	FALSE	292	1546	117	613	0	FALSE	ACH-000700
NCIH2882_LUNG	RP11-96H19.1--RP11-446N19.1	2	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.021	0.0735	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2882_LUNG	0.75	1	0.0945	FALSE	407	2205	196	549	0	FALSE	ACH-000700
NCIH2882_LUNG	RP11-114H23.1--RP11-114H23.2	3	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0.021	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH2882_LUNG	1	1	0.0525	FALSE	81	155	12	160	0	FALSE	ACH-000700
NCIH2882_LUNG	RP11-476K15.1--CTD-2015H3.2	3	2	RP11-476K15.1	1041	chr18:1509224:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0.021	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCIH2882_LUNG	1	1	0.0525	FALSE	0	0	0	5	0	FALSE	ACH-000700
NCIH2882_LUNG	RP11-319G9.5--WWOX	3	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	9	1	0.31	0.0315	0.0105	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	NCIH2882_LUNG	0.31	1	0.042	FALSE	154	425	28	76	0	FALSE	ACH-000700
NCIH2882_LUNG	EPS15L1--CHAF1A	3	0	EPS15L1	1173	chr19:16582724:-	CHAF1A	34866	chr19:4405909:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0	EPS15L1->Oncogene{Bushman},chr19:16466050-16582896:-,epidermal_growth_factor_receptor_pathway_substrate_15-like_1,CHAF1A->chr19:4402659-4445015:+,chromatin_assembly_factor_1_subunit_A	NCIH2882_LUNG	1	1	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	KANSL1--ARL17B	1	8	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	NO	32	65	0.22	0.12	0.0105	0.084	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH2882_LUNG	0.12	0.22	0.0945	TRUE	20	16	0	28	0	FALSE	ACH-000700
NCIH2882_LUNG	MT-CO2--MT-ND2	3	0	MT-CO2	1231	chrM:7816:+	MT-ND2	5552	chrM:5337:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0315	0	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH2882_LUNG	1	1	0.0315	FALSE	105	46	5	21	0	FALSE	ACH-000700
NCIH2882_LUNG	ZCCHC10--HSPA4	3	0	ZCCHC10	2178	chr5:132358533:-	HSPA4	13947	chr5:132400672:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0	LOCAL_INVERSION:-:+:[25358],ZCCHC10->chr5:132332677-132362296:-,zinc_finger_CCHC-type_containing_10,HSPA4->chr5:132387654-132442141:+,heat_shock_protein_family_A_(Hsp70)_member_4	NCIH2882_LUNG	1	1	0.0315	TRUE	0	0	0	2	0	TRUE	ACH-000700
NCIH2882_LUNG	RP11-476K15.1--CTD-2015H3.2	2	3	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0.0315	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCIH2882_LUNG	1	1	0.0525	FALSE	0	46	0	73	0	FALSE	ACH-000700
NCIH2882_LUNG	CTD-2008L17.1--RP11-456O19.2	2	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.021	0.021	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH2882_LUNG	0.8	1	0.042	FALSE	20	187	4	79	0	FALSE	ACH-000700
NCIH2882_LUNG	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.33	1	0.021	0.021	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2882_LUNG	0.33	1	0.042	FALSE	164	806	69	479	0	FALSE	ACH-000700
NCIH2882_LUNG	POLE4--RP11-355F16.1	2	2	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	547	0	0.01	1	0.021	0.021	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	NCIH2882_LUNG	0.01	1	0.042	FALSE	5	7	0	37	0	FALSE	ACH-000700
NCIH2882_LUNG	RP11-204C23.1--RP11-450H5.1	1	6	RP11-204C23.1	1102	chr3:2029053:-	RP11-450H5.1	5763	chr3:166288146:-	ONLY_REF_SPLICE	NO	39	0	0.15	1	0.0105	0.063	RP11-204C23.1->chr3:2004065-2029154:-,RP11-450H5.1->chr3:166287481-166288551:-	NCIH2882_LUNG	0.15	1	0.0735	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	RP11-6N13.1--CTD-2374C24.1	1	6	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	NO	1	0	0.88	1	0.0105	0.063	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	NCIH2882_LUNG	0.88	1	0.0735	TRUE	5	12	0	42	0	FALSE	ACH-000700
NCIH2882_LUNG	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	1	0	0.88	1	0.0105	0.063	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2882_LUNG	0.88	1	0.0735	FALSE	467	2173	244	435	0	FALSE	ACH-000700
NCIH2882_LUNG	CD44--PDHX	2	1	CD44	1501	chr11:35160917:+	PDHX	33796	chr11:34969053:+	ONLY_REF_SPLICE	YES	3279	179	0	0.02	0.021	0.0105	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	NCIH2882_LUNG	0	0.02	0.0315	FALSE	0	1	0	5	0	FALSE	ACH-000700
NCIH2882_LUNG	CMTM8--CMTM7	2	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	47	109	0.06	0.03	0.021	0.0105	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	NCIH2882_LUNG	0.03	0.06	0.0315	FALSE	118	557	29	88	0	FALSE	ACH-000700
NCIH2882_LUNG	BDP1--ANAPC1	2	0	BDP1	7182	chr5:70763314:+	ANAPC1	75792	chr2:112580177:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	BDP1->B_double_prime_1,_subunit_of_RNA_polymerase_III_transcription_initiation_factor_IIIB,chr5:70751442-70863649:+,ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-	NCIH2882_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	RCC1--EEF1D	2	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	NCIH2882_LUNG	1	1	0.021	TRUE	1	10	0	18	0	TRUE	ACH-000700
NCIH2882_LUNG	RP11-152P17.2--EIF3H	2	0	RP11-152P17.2	1144	chr8:107072609:-	EIF3H	24759	chr8:117671219:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	RP11-152P17.2->chr8:106792474-107072752:-,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	NCIH2882_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	ZBTB49--APLP2	2	0	ZBTB49	2327	chr4:4301824:+	APLP2	24709	chr11:129996595:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	ZBTB49->chr4:4291924-4323513:+,zinc_finger_and_BTB_domain_containing_49,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	NCIH2882_LUNG	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000700
NCIH2882_LUNG	ZEB1--GNAS	2	0	ZEB1	1798	chr10:31608221:+	GNAS	44891	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH2882_LUNG	1	1	0.021	TRUE	0	1	0	2	1	TRUE	ACH-000700
NCIH2882_LUNG	BBX--DCBLD2	1	3	BBX	4463	chr3:107245245:+	DCBLD2	55017	chr3:98539132:-	ONLY_REF_SPLICE	NO	37	123	0.1	0.03	0.0105	0.0315	BBX->bobby_sox_homolog_(Drosophila),chr3:107241783-107530171:+,DCBLD2->chr3:98514785-98620533:-,discoidin,_CUB_and_LCCL_domain_containing_2	NCIH2882_LUNG	0.03	0.1	0.042	TRUE	0	0	0	1	0	FALSE	ACH-000700
NCIH2882_LUNG	RP11-634B7.4--TRIM58	1	3	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0105	0.0315	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	NCIH2882_LUNG	1	1	0.042	TRUE	158	633	76	73	0	FALSE	ACH-000700
NCIH2882_LUNG	NRIP1--AF127936.7	1	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0105	0.021	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2882_LUNG	0.5	1	0.0315	FALSE	125	705	46	456	0	FALSE	ACH-000700
NCIH2882_LUNG	SLC12A4--PRMT7	1	2	SLC12A4	2163	chr16:68002342:-	PRMT7	34936	chr16:68379578:+	ONLY_REF_SPLICE	YES	80	120	0.04	0.02	0.0105	0.021	SLC12A4->chr16:67977377-68003504:-,solute_carrier_family_12_member_4,PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7	NCIH2882_LUNG	0.02	0.04	0.0315	TRUE	0	0	0	1	0	FALSE	ACH-000700
NCIH2882_LUNG	ABCC10--RPL7	1	1	ABCC10	1602	chr6:43395705:+	RPL7	25112	chr8:74205032:-	ONLY_REF_SPLICE	YES	15	78	0.12	0.03	0.0105	0.0105	ABCC10->ATP_binding_cassette_subfamily_C_member_10,chr6:43395104-43418168:+,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	NCIH2882_LUNG	0.03	0.12	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000700
NCIH2882_LUNG	AC002066.1--TES	1	1	AC002066.1	2203	chr7:116122867:-	TES	19794	chr7:115897348:+	ONLY_REF_SPLICE	YES	13	918	0.13	0	0.0105	0.0105	NEIGHBORS_OVERLAP:-:+:[20523],AC002066.1->chr7:115878314-116139519:-,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	NCIH2882_LUNG	0	0.13	0.021	FALSE	0	0	0	2	0	FALSE	ACH-000700
NCIH2882_LUNG	ATP6V1H--TCEA1	1	1	ATP6V1H	2981	chr8:54754138:-	TCEA1	35310	chr8:54891731:-	ONLY_REF_SPLICE	YES	263	908	0.01	0	0.0105	0.0105	GTEx_v2:{count=2;pct=0.02%;dist=Cells_-_EBV-transformed_lymphocytes=1,Whole_Blood=1},ATP6V1H->ATPase_H+_transporting_V1_subunit_H,chr8:54628117-54756118:-,TCEA1->Oncogene{Bushman},chr8:54879112-54935089:-,transcription_elongation_factor_A1	NCIH2882_LUNG	0	0.01	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000700
NCIH2882_LUNG	CD44--PDHX	1	1	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	NO	2925	179	0	0.01	0.0105	0.0105	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	NCIH2882_LUNG	0	0.01	0.021	FALSE	0	20	0	35	2	FALSE	ACH-000700
NCIH2882_LUNG	CEP128--EXOC5	1	1	CEP128	16734	chr14:81307026:-	EXOC5	53006	chr14:57700750:-	ONLY_REF_SPLICE	YES	19	73	0.1	0.03	0.0105	0.0105	CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,EXOC5->chr14:57670518-57735726:-,exocyst_complex_component_5	NCIH2882_LUNG	0.03	0.1	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000700
NCIH2882_LUNG	CRIM1--FEZ2	1	1	CRIM1	5875	chr2:36623930:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	NO	239	207	0.01	0.01	0.0105	0.0105	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	NCIH2882_LUNG	0.01	0.01	0.021	FALSE	0	1	0	2	0	FALSE	ACH-000700
NCIH2882_LUNG	CTD-2008L17.1--RP11-456O19.2	1	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0105	0.0105	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH2882_LUNG	0.67	1	0.021	FALSE	33	240	4	98	0	FALSE	ACH-000700
NCIH2882_LUNG	RP11-163F15.1--RP11-215N21.1	1	1	RP11-163F15.1	1139	chr10:110321435:-	RP11-215N21.1	6576	chr10:109871360:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0105	0.0105	RP11-163F15.1->chr10:110307733-110321573:-,RP11-215N21.1->chr10:109517591-109871360:-	NCIH2882_LUNG	0.67	1	0.021	TRUE	0	5	0	7	5	TRUE	ACH-000700
NCIH2882_LUNG	SCARB1--UBC	1	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	NO	168	48	0.01	0.04	0.0105	0.0105	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH2882_LUNG	0.01	0.04	0.021	FALSE	55	66	6	101	0	FALSE	ACH-000700
NCIH2882_LUNG	SLC12A4--PRMT7	1	1	SLC12A4	4890	chr16:67997368:-	PRMT7	39553	chr16:68386151:+	ONLY_REF_SPLICE	YES	80	116	0.02	0.02	0.0105	0.0105	SLC12A4->chr16:67977377-68003504:-,solute_carrier_family_12_member_4,PRMT7->chr16:68344877-68392466:+,protein_arginine_methyltransferase_7	NCIH2882_LUNG	0.02	0.02	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000700
NCIH2882_LUNG	TRIO--ZFP36L1	1	1	TRIO	14523	chr5:14336836:+	ZFP36L1	80514	chr14:69257209:-	ONLY_REF_SPLICE	YES	204	772	0.01	0	0.0105	0.0105	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,ZFP36L1->Oncogene{Bushman},ZFP36_ring_finger_protein-like_1,chr14:69254377-69263190:-	NCIH2882_LUNG	0	0.01	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000700
SW1116_LARGE_INTESTINE	MT-TA--MT-TC	45	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.748	0.0499	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW1116_LARGE_INTESTINE	1	1	0.7979	FALSE	462	80	0	856	0	FALSE	ACH-000489
SW1116_LARGE_INTESTINE	TIMM23B--LINC00843	8	7	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.133	0.1164	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SW1116_LARGE_INTESTINE	1	1	0.2494	TRUE	508	994	45	981	0	FALSE	ACH-000489
SW1116_LARGE_INTESTINE	MT-ND6--MT-TE	8	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.86	1	0.133	0.0665	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1116_LARGE_INTESTINE	0.86	1	0.1995	FALSE	499	1288	110	792	0	FALSE	ACH-000489
SW1116_LARGE_INTESTINE	MT-ND6--MT-TE	7	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1164	0.0332	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1116_LARGE_INTESTINE	1	1	0.1496	FALSE	499	1288	110	792	0	FALSE	ACH-000489
SW1116_LARGE_INTESTINE	MT-ND6--MT-TE	3	9	MT-ND6	1262	chrM:14412:-	MT-TE	4528	chrM:14740:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.0499	0.1496	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1116_LARGE_INTESTINE	0.92	1	0.1995	FALSE	499	1288	110	792	0	FALSE	ACH-000489
SW1116_LARGE_INTESTINE	MT-TA--MT-TC	4	5	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0.0831	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW1116_LARGE_INTESTINE	1	1	0.1496	FALSE	462	80	0	856	0	FALSE	ACH-000489
SW1116_LARGE_INTESTINE	MT-ND6--MT-TE	3	7	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.83	1	0.0499	0.1164	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1116_LARGE_INTESTINE	0.83	1	0.1663	FALSE	499	1288	110	792	0	FALSE	ACH-000489
SW1116_LARGE_INTESTINE	MT-ND6--MT-TE	4	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0.0332	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW1116_LARGE_INTESTINE	1	1	0.0997	FALSE	499	1288	110	792	0	FALSE	ACH-000489
SW1116_LARGE_INTESTINE	AMDHD2--EFCAB4A	4	0	AMDHD2	5340	chr16:2579653:+	EFCAB4A	14227	chr11:830260:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0	AMDHD2->amidohydrolase_domain_containing_2,chr16:2570358-2581423:+,EFCAB4A->chr11:826144-831991:+	SW1116_LARGE_INTESTINE	1	1	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	MT-TA--MT-TC	3	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0.0665	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW1116_LARGE_INTESTINE	1	1	0.1164	FALSE	462	80	0	856	0	FALSE	ACH-000489
SW1116_LARGE_INTESTINE	UBXN1--C2orf15	4	0	UBXN1	1591	chr11:62445977:-	C2orf15	13999	chr2:99811274:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0	UBXN1->UBX_domain_protein_1,chr11:62443970-62446567:-,C2orf15->chr2:99757948-99939204:+,chromosome_2_open_reading_frame_15	SW1116_LARGE_INTESTINE	1	1	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	AC018737.1--PSMB1	3	0	AC018737.1	1262	chr2:122407487:+	PSMB1	10976	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0499	0	AC018737.1->chr2:122407226-122485784:+,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	SW1116_LARGE_INTESTINE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	C22orf29--VPS41	3	0	C22orf29	4407	chr22:19838057:-	VPS41	16129	chr7:38908849:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	C22orf29->chr22:19833661-19842419:-,chromosome_22_open_reading_frame_29,VPS41->VPS41,_HOPS_complex_subunit,chr7:38762563-38971994:-	SW1116_LARGE_INTESTINE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	DDX17--TPD52L2	3	0	DDX17	17081	chr22:38881997:-	TPD52L2	32306	chr20:62521442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	GTEx&tcga_normals:1/3694=0.03%,DDX17->DEAD-box_helicase_17,chr22:38879445-38903665:-,TPD52L2->chr20:62496596-62522898:+,tumor_protein_D52_like_2	SW1116_LARGE_INTESTINE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW1116_LARGE_INTESTINE	1	1	0.0499	FALSE	462	80	0	856	0	FALSE	ACH-000489
SW1116_LARGE_INTESTINE	MT-TA--PKMP1	3	0	MT-TA	1048	chrM:5608:-	PKMP1	5280	chr1:115079826:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,PKMP1->chr1:115078616-115080461:+,pyruvate_kinase,_muscle_pseudogene_1	SW1116_LARGE_INTESTINE	1	1	0.0499	FALSE	0	0	0	1	0	FALSE	ACH-000489
SW1116_LARGE_INTESTINE	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0499	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW1116_LARGE_INTESTINE	1	1	0.0499	FALSE	292	1546	117	613	0	FALSE	ACH-000489
SW1116_LARGE_INTESTINE	RNF44--CASKIN2	3	0	RNF44	6400	chr5:175957148:-	CASKIN2	23152	chr17:73498099:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	RNF44->chr5:175953698-175965026:-,ring_finger_protein_44,CASKIN2->CASK_interacting_protein_2,chr17:73496342-73511664:-	SW1116_LARGE_INTESTINE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	SLC9A1--TPPP	3	0	SLC9A1	15029	chr1:27425685:-	TPPP	22096	chr5:664984:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	SLC9A1->chr1:27425306-27493472:-,solute_carrier_family_9_member_A1,TPPP->chr5:660883-693510:-,tubulin_polymerization_promoting_protein	SW1116_LARGE_INTESTINE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	STAU1--KRT8	3	0	STAU1	8682	chr20:47768191:-	KRT8	33154	chr12:53292668:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	STAU1->chr20:47729878-47804904:-,staufen_double-stranded_RNA_binding_protein_1,KRT8->chr12:53290977-53343738:-,keratin_8	SW1116_LARGE_INTESTINE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	TGFBI--ZMIZ2	3	0	TGFBI	19112	chr5:135399183:+	ZMIZ2	37560	chr7:44807562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	TGFBI->Oncogene{Bushman},chr5:135364584-135399507:+,transforming_growth_factor_beta_induced,ZMIZ2->chr7:44788180-44809477:+,zinc_finger_MIZ-type_containing_2	SW1116_LARGE_INTESTINE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	TMBIM1--VCP	3	0	TMBIM1	7141	chr2:219146805:-	VCP	28657	chr9:35059788:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0499	0	TMBIM1->chr2:219138915-219157309:-,transmembrane_BAX_inhibitor_motif_containing_1,VCP->chr9:35056061-35073246:-,valosin_containing_protein	SW1116_LARGE_INTESTINE	1	1	0.0499	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	ATP5C1--ZFAS1	2	0	ATP5C1	7637	chr10:7844817:+	ZFAS1	16866	chr20:47905582:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+,ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+	SW1116_LARGE_INTESTINE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	CALM2--HSP90AA1	2	0	CALM2	1161	chr2:47403580:-	HSP90AA1	18412	chr14:102552715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	CALM2->calmodulin_2_(phosphorylase_kinase,_delta),chr2:47387221-47403740:-,HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1	SW1116_LARGE_INTESTINE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	CYP3A5--EIF4G2	2	0	CYP3A5	2635	chr7:99273738:-	EIF4G2	29620	chr11:10822634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	CYP3A5->chr7:99245817-99277621:-,cytochrome_P450_family_3_subfamily_A_member_5,EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2	SW1116_LARGE_INTESTINE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	IVNS1ABP--LRBA	2	0	IVNS1ABP	1377	chr1:185286085:-	LRBA	58765	chr4:151520283:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein,LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-	SW1116_LARGE_INTESTINE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	MED31--DHX8	2	0	MED31	1134	chr17:6554821:-	DHX8	25985	chr17:41597498:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	MED31->chr17:6546635-6554954:-,mediator_complex_subunit_31,DHX8->DEAH-box_helicase_8,chr17:41561233-41621831:+	SW1116_LARGE_INTESTINE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	TRAPPC9--ZNF706	2	0	TRAPPC9	10586	chr8:141381063:-	ZNF706	71707	chr8:102213971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,ZNF706->chr8:102190106-102218421:-,zinc_finger_protein_706	SW1116_LARGE_INTESTINE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	WDR45--GABPA	2	0	WDR45	1589	chrX:48957520:-	GABPA	15159	chr21:27113884:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	WDR45->WD_repeat_domain_45,chrX:48929385-48958108:-,GABPA->GA_binding_protein_transcription_factor_alpha_subunit,chr21:27106881-27144771:+	SW1116_LARGE_INTESTINE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	WTAPP1--RUVBL1	2	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	SW1116_LARGE_INTESTINE	1	1	0.0332	TRUE	9	252	6	66	0	FALSE	ACH-000489
SW1116_LARGE_INTESTINE	ZFAS1--PHACTR4	2	0	ZFAS1	3117	chr20:47897107:+	PHACTR4	9805	chr1:28733921:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	ZFAS1->ZNFX1_antisense_RNA_1,chr20:47894715-47905797:+,PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4	SW1116_LARGE_INTESTINE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000489
SW1116_LARGE_INTESTINE	ZNF462--SMC2	1	3	ZNF462	1259	chr9:109625636:+	SMC2	32174	chr9:106860727:+	ONLY_REF_SPLICE	YES	0	8	1	0.33	0.0166	0.0499	ZNF462->chr9:109625378-109775915:+,zinc_finger_protein_462,SMC2->chr9:106856541-106903698:+,structural_maintenance_of_chromosomes_2	SW1116_LARGE_INTESTINE	0.33	1	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000489
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--PVT1	512	168	RFTN1	18032	chr3:16364883:-	PVT1	46280	chr8:129108764:+	ONLY_REF_SPLICE	YES	618	97	0.52	0.88	4.708	1.5448	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.88	6.2528	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	185	48	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.7011	0.4414	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.1425	TRUE	477	1352	189	275	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	95	2	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1551	1	0.06	0.8736	0.0184	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.892	FALSE	101	855	57	72	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	66	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6069	0.2942	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9011	TRUE	508	994	45	981	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED20--C6orf132	69	10	MED20	1135	chr6:41888743:-	C6orf132	15988	chr6:42078029:-	ONLY_REF_SPLICE	YES	7	0	0.92	1	0.6345	0.092	MED20->chr6:41873092-41888877:-,mediator_complex_subunit_20,C6orf132->chr6:42068856-42110357:-,chromosome_6_open_reading_frame_132	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.7265	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--PVT1	29	163	RFTN1	18032	chr3:16364883:-	PVT1	46283	chr8:129108767:+	ONLY_REF_SPLICE	YES	618	96	0.24	0.67	0.2667	1.4988	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.67	1.7655	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--PVT1	45	50	RFTN1	15846	chr3:16399439:-	PVT1	46280	chr8:129108764:+	ONLY_REF_SPLICE	YES	525	97	0.15	0.49	0.4138	0.4598	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.49	0.8736	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	43	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	186	0	0.19	1	0.3954	0.0184	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	1	0.4138	TRUE	519	3926	326	965	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	37	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3402	0.0552	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3954	FALSE	462	80	0	856	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A1--RP11-218I7.2	33	8	SLC1A1	1327	chr9:4490770:+	RP11-218I7.2	20593	chr9:6066365:+	ONLY_REF_SPLICE	YES	11	0	0.79	1	0.3034	0.0736	SLC1A1->chr9:4490444-4587469:+,solute_carrier_family_1_member_1,RP11-218I7.2->chr9:6047360-6066714:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	0.377	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	110	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	10	0	0.92	1	0.0368	1.0115	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	1.0483	FALSE	344	826	44	306	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	109	MT-ND4	1170	chrM:10929:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	5	0	0.96	1	0.0368	1.0023	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	1.0391	FALSE	344	826	44	306	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	31	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2851	0.0092	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.2943	FALSE	499	1288	110	792	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	112	MT-ND4	1299	chrM:11058:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	YES	30	0	0.79	1	0.0276	1.0299	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	1.0575	FALSE	344	827	44	306	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	108	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	2	0	0.98	1	0.0276	0.9931	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	1.0207	FALSE	344	826	44	306	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	102	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0276	0.9379	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	0.9655	FALSE	344	826	44	306	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--PVT1	2	93	RFTN1	16950	chr3:16368280:-	PVT1	46280	chr8:129108764:+	ONLY_REF_SPLICE	YES	573	97	0.14	0.49	0.0184	0.8552	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.49	0.8736	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	75	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	29	0	0.73	1	0.0276	0.6896	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	0.7172	FALSE	344	827	44	306	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	9	49	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0828	0.4506	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5334	TRUE	160	277	29	98	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	68	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0276	0.6253	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	0.6529	FALSE	344	821	44	306	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	20	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1839	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1839	FALSE	462	80	0	856	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	18	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1655	0.0552	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2207	FALSE	462	80	0	856	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	59	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0276	0.5425	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.5701	FALSE	344	826	44	306	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	17	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1563	0.0092	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.1655	FALSE	499	1288	110	792	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	17	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1563	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1563	TRUE	46	1352	75	139	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGL@--RPL32	16	0	IGL@	57592	chr22:23222950:+	RPL32	74787	chr3:12883040:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1471	0	IGL@->Oncogene{Bushman},RPL32->chr3:12875984-12883087:-,ribosomal_protein_L32	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1471	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--PVT1	6	39	RFTN1	18032	chr3:16364883:-	PVT1	48937	chr8:129113226:+	ONLY_REF_SPLICE	YES	618	136	0.07	0.25	0.0552	0.3586	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.25	0.4138	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	42	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	3	37	0.94	0.56	0.046	0.3862	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	0.94	0.4322	FALSE	189	492	56	216	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	13	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	118	2	0.15	0.91	0.1195	0.0736	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.91	0.1931	TRUE	267	562	48	632	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--PVT1	3	48	RFTN1	15846	chr3:16399439:-	PVT1	46283	chr8:129108767:+	ONLY_REF_SPLICE	YES	525	96	0.09	0.35	0.0276	0.4414	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.35	0.469	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00477--RP11-444D3.1	12	9	LINC00477	2213	chr12:24735890:-	RP11-444D3.1	10607	chr12:24560500:-	ONLY_REF_SPLICE	YES	43	36	0.33	0.37	0.1103	0.0828	NEIGHBORS[4374],LINC00477->chr12:24719898-24737102:-,long_intergenic_non-protein_coding_RNA_477,RP11-444D3.1->chr12:24366190-24715524:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.37	0.1931	FALSE	0	0	0	3	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	13	2	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	1517	1	0.01	0.1195	0.0184	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1379	FALSE	101	855	57	72	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1011	0.0828	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.1839	FALSE	499	1288	110	792	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	18	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	8	0	0.76	1	0.0736	0.1655	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.2391	FALSE	344	826	44	306	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	9	12	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0828	0.1103	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.1931	FALSE	344	821	44	306	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--PVT1	7	20	RFTN1	14730	chr3:16411583:-	PVT1	46280	chr8:129108764:+	ONLY_REF_SPLICE	YES	537	97	0.05	0.22	0.0644	0.1839	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.22	0.2483	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	6	24	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0552	0.2207	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2759	TRUE	274	363	69	150	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	26	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.046	0.2391	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.2851	FALSE	344	821	44	306	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	25	MT-CO3	1032	chrM:9238:+	MT-ATP6	5217	chrM:8959:+	INCL_NON_REF_SPLICE	YES	1	37	0.97	0.44	0.0368	0.2299	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.97	0.2667	FALSE	189	492	56	216	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	27	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	8	0	0.79	1	0.0276	0.2483	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	0.2759	FALSE	344	826	44	306	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00477--RP11-444D3.1	7	10	LINC00477	3337	chr12:24724468:-	RP11-444D3.1	10607	chr12:24560500:-	ONLY_REF_SPLICE	YES	20	36	0.46	0.32	0.0644	0.092	NEIGHBORS[4374],LINC00477->chr12:24719898-24737102:-,long_intergenic_non-protein_coding_RNA_477,RP11-444D3.1->chr12:24366190-24715524:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.46	0.1564	FALSE	0	0	0	2	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	18	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9	0	0.72	1	0.046	0.1655	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	1	0.2115	FALSE	344	826	44	306	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0736	0.046	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1196	FALSE	499	1288	110	792	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A1--IL33	9	1	SLC1A1	1327	chr9:4490770:+	IL33	20494	chr9:6241684:+	ONLY_REF_SPLICE	YES	11	0	0.48	1	0.0828	0.0092	SLC1A1->chr9:4490444-4587469:+,solute_carrier_family_1_member_1,IL33->chr9:6215805-6257983:+,interleukin_33	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	0.092	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	8	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.0736	0.0368	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.1104	FALSE	515	4851	409	746	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--ALDOA	9	0	RPS3	6203	chr11:75115732:+	ALDOA	22177	chr16:30079967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0828	0	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0828	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	4	16	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	28	0	0.42	1	0.0368	0.1471	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.1839	TRUE	16	11	2	20	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	18	MT-ND6	1302	chrM:14372:-	MT-TE	4520	chrM:14748:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0276	0.1655	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.1931	FALSE	499	1288	110	792	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.0644	0.0092	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	0.0736	FALSE	189	492	56	216	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	8	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	4	0	0.76	1	0.046	0.0736	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.1196	FALSE	189	492	56	216	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	6	3	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	2571	1	0	0.0552	0.0276	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0828	FALSE	101	855	57	72	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	8	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.0368	0.0736	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.1104	FALSE	189	492	56	216	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	8	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	25	0	0.32	1	0.0368	0.0736	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	0.1104	FALSE	344	827	44	306	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	8	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	8	0	0.6	1	0.0368	0.0736	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.1104	FALSE	344	826	44	306	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	6	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0552	FALSE	101	855	57	72	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0552	FALSE	499	1288	110	792	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00477--RP11-444D3.1	3	11	LINC00477	3337	chr12:24724468:-	RP11-444D3.1	9426	chr12:24613710:-	ONLY_REF_SPLICE	YES	20	37	0.41	0.27	0.0276	0.1011	NEIGHBORS[4374],LINC00477->chr12:24719898-24737102:-,long_intergenic_non-protein_coding_RNA_477,RP11-444D3.1->chr12:24366190-24715524:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.41	0.1287	FALSE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	11	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	4	0	0.78	1	0.0276	0.1011	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.1287	FALSE	189	492	56	216	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	114	2	0.08	0.83	0.0368	0.0552	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.83	0.092	TRUE	267	562	48	632	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00477--RP11-444D3.1	3	10	LINC00477	2213	chr12:24735890:-	RP11-444D3.1	9426	chr12:24613710:-	ONLY_REF_SPLICE	YES	43	37	0.23	0.26	0.0276	0.092	NEIGHBORS[4374],LINC00477->chr12:24719898-24737102:-,long_intergenic_non-protein_coding_RNA_477,RP11-444D3.1->chr12:24366190-24715524:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.26	0.1196	FALSE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	10	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	NO	2	0	0.87	1	0.0276	0.092	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	0.1196	FALSE	189	492	56	216	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0.0552	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.092	FALSE	462	80	0	856	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CXXC1--RPLP2	5	1	CXXC1	5217	chr18:47810458:-	RPLP2	10596	chr11:810280:+	INCL_NON_REF_SPLICE	YES	1124	657	0.01	0.01	0.046	0.0092	CXXC1->CXXC_finger_protein_1,chr18:47808713-47814674:-,RPLP2->chr11:809647-812880:+,ribosomal_protein_lateral_stalk_subunit_P2	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0552	FALSE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--ALDOA	5	1	RPS3	3881	chr11:75113410:+	ALDOA	14905	chr16:30066408:+	INCL_NON_REF_SPLICE	NO	7342	2	0	0.75	0.046	0.0092	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.75	0.0552	FALSE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4XP8	5	0	IGH@	97640	chr14:106321054:-	TMSB4XP8	131814	chr4:91760251:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	IGH@->Oncogene{Bushman},TMSB4XP8->chr4:91759652-91760263:-,thymosin_beta_4,_X-linked_pseudogene_8	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.046	TRUE	0	0	0	3	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MMP17--NOC4L	5	0	MMP17	1261	chr12:132313198:+	NOC4L	19756	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.046	0	GTEx_FI:{Brain=[count:15=pct:2.3]},MMP17->chr12:132312938-132336328:+,matrix_metallopeptidase_17,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.046	TRUE	7	45	0	7	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.046	FALSE	189	492	56	216	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RFTN1	3	6	PVT1	22657	chr8:129108900:+	RFTN1	30698	chr3:16535384:-	ONLY_REF_SPLICE	YES	103	237	0.08	0.04	0.0276	0.0552	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.08	0.0828	TRUE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	4	1	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	1	1501	0.83	0	0.0368	0.0092	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.83	0.046	FALSE	101	855	57	72	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RFTN1	4	1	PVT1	1202	chr8:128806980:+	RFTN1	30698	chr3:16535384:-	ONLY_REF_SPLICE	YES	134	237	0.04	0.02	0.0368	0.0092	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.046	TRUE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0.046	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0736	FALSE	467	2173	244	435	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	4	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	33	0	0.13	1	0.0368	0.0092	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.046	FALSE	272	151	14	158	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL5	4	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	TRUE	0	0	0	39	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	FALSE	189	492	56	216	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	FALSE	344	821	44	306	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1034	chrM:5622:-	MT-TC	4085	chrM:5811:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	FALSE	462	80	0	856	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RB1--ITM2B	4	0	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0368	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0368	TRUE	53	73	8	19	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GATS--PILRB	3	2	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	6	132	0.45	0.04	0.0276	0.0184	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.45	0.046	TRUE	57	41	2	35	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	3	1	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	463	1	0.01	0.0276	0.0092	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0368	FALSE	101	855	57	72	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	1	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.0276	0.0092	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.0368	FALSE	499	1288	110	792	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	9	RP11-444D3.1	9606	chr12:24366277:-	SOX5	18992	chr12:23999127:-	ONLY_REF_SPLICE	NO	0	32	1	0.24	0.0092	0.0828	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	1	0.092	TRUE	3	4	0	10	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0.046	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0644	FALSE	192	492	57	212	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A1--COL2A1	3	1	SLC38A1	2153	chr12:46662648:-	COL2A1	33387	chr12:48393908:-	ONLY_REF_SPLICE	YES	461	0	0.01	1	0.0276	0.0092	SLC38A1->Oncogene{Bushman},chr12:46576846-46663800:-,solute_carrier_family_38_member_1,COL2A1->chr12:48366748-48398269:-,collagen_type_II_alpha_1	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0368	FALSE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--MT-ATP8	3	0	EEF2	8430	chr19:3977882:-	MT-ATP8	13379	chrM:8486:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLRC4--ITPR2	3	0	KLRC4	3122	chr12:10560235:-	ITPR2	26148	chr12:26808785:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	KLRC4->chr12:10559983-10562356:-,killer_cell_lectin_like_receptor_C4,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0276	FALSE	189	492	56	216	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0276	FALSE	344	821	44	306	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOP58--CASP10	3	0	NOP58	1271	chr2:203130709:+	CASP10	27857	chr2:202068453:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+,CASP10->caspase_10,chr2:202047604-202094129:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0276	TRUE	0	0	0	434	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC7A5--ACTG1	3	0	SLC7A5	8068	chr16:87871474:-	ACTG1	21178	chr17:79478603:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0276	TRUE	0	0	0	11	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADAP1--C7orf50	2	2	ADAP1	9672	chr7:959605:-	C7orf50	29696	chr7:1049779:-	ONLY_REF_SPLICE	YES	99	177	0.04	0.02	0.0184	0.0184	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Brain_-_Cerebellar_Hemisphere=1},LOCAL_REARRANGEMENT:-:[41579],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0368	TRUE	0	6	0	10	1	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RFTN1	2	2	PVT1	10746	chr8:128951922:+	RFTN1	30695	chr3:16535387:-	ONLY_REF_SPLICE	YES	121	264	0.03	0.01	0.0184	0.0184	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0368	FALSE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RFTN1	2	2	PVT1	18060	chr8:129022690:+	RFTN1	30698	chr3:16535384:-	ONLY_REF_SPLICE	YES	109	237	0.04	0.02	0.0184	0.0184	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0368	TRUE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--PVT1	1	6	RFTN1	15846	chr3:16399439:-	PVT1	48937	chr8:129113226:+	ONLY_REF_SPLICE	NO	525	136	0.01	0.05	0.0092	0.0552	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.0644	FALSE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00477--RP11-444D3.1	1	5	LINC00477	3337	chr12:24724468:-	RP11-444D3.1	11689	chr12:24521573:-	ONLY_REF_SPLICE	YES	20	21	0.23	0.22	0.0092	0.046	NEIGHBORS[4374],LINC00477->chr12:24719898-24737102:-,long_intergenic_non-protein_coding_RNA_477,RP11-444D3.1->chr12:24366190-24715524:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.23	0.0552	FALSE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00477--RP11-444D3.1	1	5	LINC00477	2213	chr12:24735890:-	RP11-444D3.1	11689	chr12:24521573:-	ONLY_REF_SPLICE	NO	43	21	0.12	0.22	0.0092	0.046	NEIGHBORS[4374],LINC00477->chr12:24719898-24737102:-,long_intergenic_non-protein_coding_RNA_477,RP11-444D3.1->chr12:24366190-24715524:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.22	0.0552	FALSE	0	0	0	2	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED13L--UBC	2	1	MED13L	1279	chr12:116714865:-	UBC	45398	chr12:125398320:-	ONLY_REF_SPLICE	YES	9	54	0.25	0.05	0.0184	0.0092	GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Whole_Blood=[count:10=pct:7.6],Blood=[count:6=pct:3.4],Muscle=[count:3=pct:1.3]},GTEx_v2:{count=19;pct=0.22%;dist=Whole_Blood=12,Muscle_-_Skeletal=4,Esophagus_-_Muscularis=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},MED13L->chr12:116395711-116715143:-,mediator_complex_subunit_13_like,UBC->chr12:125396150-125401914:-,ubiquitin_C	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.25	0.0276	TRUE	15	1	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BANP--CTBP1	2	0	BANP	3272	chr16:87985121:+	CTBP1	37969	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	BANP->BTG3_associated_nuclear_protein,chr16:87982850-88110924:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRE--FASTKD5	2	0	BRE	4120	chr2:28117551:+	FASTKD5	23989	chr20:3129906:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+,FASTKD5->FAST_kinase_domains_5,chr20:3127165-3140543:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--PRKAG1	2	0	C17orf76-AS1	1593	chr17:16342728:+	PRKAG1	16794	chr12:49406893:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	C17orf76-AS1->chr17:16342136-16381992:+,PRKAG1->chr12:49396057-49412980:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_1	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CABIN1--SKA2	2	0	CABIN1	29373	chr22:24494155:+	SKA2	57016	chr17:57189706:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	CABIN1->calcineurin_binding_protein_1,chr22:24407642-24574596:+,SKA2->chr17:57187312-57232630:-,spindle_and_kinetochore_associated_complex_subunit_2	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD22--ALDOA	2	0	CD22	2739	chr19:35820133:+	ALDOA	27242	chr16:30079967:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	CD22->CD22_molecule,chr19:35810164-35838258:+,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DHRSX--PSMG3	2	0	DHRSX	9490	chrX:2184781:-	PSMG3	19432	chr7:1608996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	DHRSX->chrX:2137557-2420846:-,chrY:2087557-2370846:-,dehydrogenase/reductase_(SDR_family)_X-linked,PSMG3->chr7:1606966-1610641:-,proteasome_assembly_chaperone_3	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DOT1L--DAZAP1	2	0	DOT1L	1117	chr19:2164264:+	DAZAP1	41573	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	DOT1L->ArcherDX_panel,DOT1_like_histone_H3K79_methyltransferase,FoundationOne_panel,chr19:2164148-2232577:+,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	2	0	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	3	48	0	26	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	3	14	2	43	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAN2B1--TRIM65	2	0	MAN2B1	5543	chr19:12772074:-	TRIM65	25615	chr17:73876710:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	MAN2B1->chr19:12757325-12777556:-,mannosidase_alpha_class_2B_member_1,TRIM65->chr17:73876416-73893084:-,tripartite_motif_containing_65	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MATR3--MAD1L1	2	0	MATR3	9772	chr5:138629494:+	MAD1L1	52120	chr7:2188873:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	MATR3->chr5:138609441-138667360:+,matrin_3,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	2	0	NOC4L	2218	chr12:132630210:+	FBRSL1	23658	chr12:133144067:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	2	2	0	6	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOC4L--FBRSL1	2	0	NOC4L	2218	chr12:132630210:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	1	0	10	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB3GAP2--ARID4B	2	0	RAB3GAP2	9418	chr1:220386229:-	ARID4B	52364	chr1:235394504:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	RAB3GAP2->RAB3_GTPase_activating_non-catalytic_protein_subunit_2,chr1:220321635-220445796:-,ARID4B->AT-rich_interaction_domain_4B,chr1:235294949-235491534:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--PVT1	2	0	RFTN1	3399	chr3:16535232:-	PVT1	46280	chr8:129108764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-656D10.3--NFYC	2	0	RP11-656D10.3	1073	chr1:40974261:-	NFYC	15719	chr1:41204508:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	RP11-656D10.3->chr1:40958829-40974333:-,NFYC->chr1:41157320-41237275:+,nuclear_transcription_factor_Y_subunit_gamma	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SBNO2--DAZAP1	2	0	SBNO2	1112	chr19:1174171:-	DAZAP1	32349	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GTEx_FI:{Skin=[count:2=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Lung=1,Minor_Salivary_Gland=1,Liver=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	4	1	0	5	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TLR8-AS1--DNAJC14	2	0	TLR8-AS1	2180	chrX:12924309:-	DNAJC14	9460	chr12:56222498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	TLR8-AS1->TLR8_antisense_RNA_1,chrX:12920936-12926452:-,DNAJC14->DnaJ_heat_shock_protein_family_(Hsp40)_member_C14,chr12:56214744-56224608:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VAV2--BRD3	2	0	VAV2	1530	chr9:136857197:-	BRD3	42940	chr9:136918712:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[37701],VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,BRD3->Oncogene{Bushman},bromodomain_containing_3,chr9:136895427-136933657:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0184	TRUE	0	0	0	2	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00477--RP11-444D3.1	1	2	LINC00477	3337	chr12:24724468:-	RP11-444D3.1	15598	chr12:24430246:-	ONLY_REF_SPLICE	NO	20	24	0.13	0.11	0.0092	0.0184	NEIGHBORS[4374],LINC00477->chr12:24719898-24737102:-,long_intergenic_non-protein_coding_RNA_477,RP11-444D3.1->chr12:24366190-24715524:-	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.13	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--RFTN1	1	2	PVT1	13955	chr8:129001537:+	RFTN1	30698	chr3:16535384:-	ONLY_REF_SPLICE	YES	83	237	0.03	0.01	0.0092	0.0184	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HLCS--TTC3	1	1	HLCS	13330	chr21:38269160:-	TTC3	32150	chr21:38459547:+	ONLY_REF_SPLICE	NO	12	27	0.14	0.07	0.0092	0.0092	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Coronary=1},LOCAL_INVERSION:-:+:[82990],HLCS->chr21:38123189-38362536:-,holocarboxylase_synthetase,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.14	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INPP5F--MCMBP	1	1	INPP5F	15461	chr10:121571467:+	MCMBP	45494	chr10:121591612:-	ONLY_REF_SPLICE	NO	44	297	0.04	0.01	0.0092	0.0092	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Putamen_(basal_ganglia)=1},LOCAL_INVERSION:+:-:[320],INPP5F->chr10:121485609-121588652:+,inositol_polyphosphate-5-phosphatase_F,MCMBP->chr10:121588972-121652068:-,minichromosome_maintenance_complex_binding_protein	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFB2--GET4	1	1	NDUFB2	2961	chr7:140396642:+	GET4	21417	chr7:925693:+	ONLY_REF_SPLICE	YES	454	82	0	0.02	0.0092	0.0092	NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+,GET4->chr7:916189-936073:+,golgi_to_ER_traffic_protein_4	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--ALDOA	1	1	RPS3	2292	chr11:75111821:+	ALDOA	17955	chr16:30075745:+	ONLY_REF_SPLICE	NO	4329	111	0	0.02	0.0092	0.0092	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNX29--LITAF	1	1	SNX29	5452	chr16:12121301:+	LITAF	52299	chr16:11650591:-	ONLY_REF_SPLICE	YES	32	14	0.06	0.12	0.0092	0.0092	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,LITAF->chr16:11641853-11730237:-,lipopolysaccharide_induced_TNF_factor	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.12	0.0184	TRUE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TSSC1--ACP1	1	1	TSSC1	4895	chr2:3341788:-	ACP1	27632	chr2:271866:+	ONLY_REF_SPLICE	YES	80	31	0.02	0.06	0.0092	0.0092	TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1,ACP1->acid_phosphatase_1,_soluble,chr2:264140-278283:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.06	0.0184	TRUE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB2--ARHGAP15	1	1	ZEB2	3310	chr2:145277506:-	ARHGAP15	64991	chr2:144381702:+	ONLY_REF_SPLICE	YES	54	83	0.04	0.02	0.0092	0.0092	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.08%,GTEx_FI:{Blood=[count:17=pct:9.8],Whole_Blood=[count:16=pct:12.1],Nerve=[count:6=pct:3.5],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=23,Nerve_-_Tibial=9,Spleen=4,Lung=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0184	TRUE	0	0	0	1	0	FALSE	ACH-000388
NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZFYVE21--KLC1	1	1	ZFYVE21	1250	chr14:104182316:+	KLC1	34861	chr14:104166992:+	ONLY_REF_SPLICE	YES	117	90	0.02	0.02	0.0092	0.0092	GTEx_FI:{Esophagus=[count:4=pct:1.0],Brain=[count:3=pct:0.5],Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Colon=[count:1=pct:0.5],Pituitary=[count:1=pct:1.9],Breast=[count:1=pct:0.9]},GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_REARRANGEMENT:+:[14179],ZFYVE21->chr14:104182067-104200005:+,zinc_finger_FYVE-type_containing_21,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.0184	TRUE	10	10	1	10	0	FALSE	ACH-000388
TE6_OESOPHAGUS	TMX2--SHANK2	76	38	TMX2	1208	chr11:57480279:+	SHANK2	14214	chr11:70858384:-	ONLY_REF_SPLICE	YES	54	1	0.68	0.99	1.033	0.5165	TMX2->chr11:57480072-57508445:+,thioredoxin_related_transmembrane_protein_2,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	TE6_OESOPHAGUS	0.68	0.99	1.5495	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	MT-ND4--MT-ND4L	4	77	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	23	0	0.78	1	0.0544	1.0465	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE6_OESOPHAGUS	0.78	1	1.1009	FALSE	344	827	44	306	0	FALSE	ACH-000605
TE6_OESOPHAGUS	MT-ND4--MT-ND4L	3	51	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	43	0	0.56	1	0.0408	0.6932	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE6_OESOPHAGUS	0.56	1	0.734	FALSE	344	827	44	306	0	FALSE	ACH-000605
TE6_OESOPHAGUS	HCG18--EMILIN2	15	0	HCG18	1797	chr6:30294131:-	EMILIN2	25997	chr18:2890559:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2039	0	HCG18->HLA_complex_group_18_(non-protein_coding),chr6:30255174-30294927:-,EMILIN2->chr18:2847028-2915991:+,elastin_microfibril_interfacer_2	TE6_OESOPHAGUS	1	1	0.2039	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	MT-ND6--MT-TE	13	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1767	0.0272	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE6_OESOPHAGUS	1	1	0.2039	FALSE	499	1288	110	792	0	FALSE	ACH-000605
TE6_OESOPHAGUS	TMX2--SHANK2	4	38	TMX2	1208	chr11:57480279:+	SHANK2	14220	chr11:70858378:-	INCL_NON_REF_SPLICE	YES	54	1	0.44	0.98	0.0544	0.5165	TMX2->chr11:57480072-57508445:+,thioredoxin_related_transmembrane_protein_2,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	TE6_OESOPHAGUS	0.44	0.98	0.5709	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	CLYBL--UBAC2	13	1	CLYBL	1093	chr13:100259011:+	UBAC2	29794	chr13:99966351:+	ONLY_REF_SPLICE	YES	0	27	1	0.34	0.1767	0.0136	CLYBL->chr13:100258919-100549387:+,citrate_lyase_beta_like,UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+	TE6_OESOPHAGUS	0.34	1	0.1903	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	TIMM23B--LINC00843	12	4	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1631	0.0544	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TE6_OESOPHAGUS	1	1	0.2175	TRUE	508	994	45	981	0	FALSE	ACH-000605
TE6_OESOPHAGUS	RP11-123O10.4--GRIP1	12	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1631	0.0272	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TE6_OESOPHAGUS	1	1	0.1903	FALSE	416	2512	207	587	0	FALSE	ACH-000605
TE6_OESOPHAGUS	HCG18--EMILIN2	10	7	HCG18	3356	chr6:30282046:-	EMILIN2	25997	chr18:2890559:+	ONLY_REF_SPLICE	YES	6	0	0.74	1	0.1359	0.0951	HCG18->HLA_complex_group_18_(non-protein_coding),chr6:30255174-30294927:-,EMILIN2->chr18:2847028-2915991:+,elastin_microfibril_interfacer_2	TE6_OESOPHAGUS	0.74	1	0.231	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	HCG18--EMILIN2	10	3	HCG18	2142	chr6:30293786:-	EMILIN2	25997	chr18:2890559:+	ONLY_REF_SPLICE	YES	10	0	0.57	1	0.1359	0.0408	HCG18->HLA_complex_group_18_(non-protein_coding),chr6:30255174-30294927:-,EMILIN2->chr18:2847028-2915991:+,elastin_microfibril_interfacer_2	TE6_OESOPHAGUS	0.57	1	0.1767	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	MT-ND4--MT-ND4L	4	19	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	5252	0	0	1	0.0544	0.2582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE6_OESOPHAGUS	0	1	0.3126	FALSE	328	800	43	304	0	FALSE	ACH-000605
TE6_OESOPHAGUS	MEIS2--C15orf41	7	6	MEIS2	13726	chr15:37242525:-	C15orf41	52960	chr15:37100525:+	ONLY_REF_SPLICE	YES	9	17	0.59	0.43	0.0951	0.0815	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:-:+:[78957],MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,C15orf41->chr15:36871812-37102449:+,chromosome_15_open_reading_frame_41	TE6_OESOPHAGUS	0.43	0.59	0.1766	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	MT-ND4--MT-ND4L	5	14	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	23	0	0.45	1	0.068	0.1903	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE6_OESOPHAGUS	0.45	1	0.2583	FALSE	344	826	44	306	0	FALSE	ACH-000605
TE6_OESOPHAGUS	MT-ND4--MT-ND4L	5	14	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	273	0	0.07	1	0.068	0.1903	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	TE6_OESOPHAGUS	0.07	1	0.2583	FALSE	344	827	44	306	0	FALSE	ACH-000605
TE6_OESOPHAGUS	DIP2B--ZNF717	7	3	DIP2B	5613	chr12:51054102:+	ZNF717	51585	chr3:75791016:-	ONLY_REF_SPLICE	YES	12	6	0.45	0.62	0.0951	0.0408	DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B,ZNF717->chr3:75758794-75834734:-,zinc_finger_protein_717	TE6_OESOPHAGUS	0.45	0.62	0.1359	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	NIPA2--POLA1	6	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	TE6_OESOPHAGUS	1	1	0.0815	TRUE	46	1352	75	139	0	FALSE	ACH-000605
TE6_OESOPHAGUS	RP11-680G10.1--GSE1	5	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	8	1	0.5	0.068	0.0408	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	TE6_OESOPHAGUS	0.5	1	0.1088	TRUE	465	1949	224	605	0	FALSE	ACH-000605
TE6_OESOPHAGUS	TTC6--MIPOL1	5	3	TTC6	2242	chr14:38075947:+	MIPOL1	73587	chr14:37838722:+	ONLY_REF_SPLICE	YES	1	10	0.89	0.44	0.068	0.0408	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	TE6_OESOPHAGUS	0.44	0.89	0.1088	TRUE	0	3	0	4	3	TRUE	ACH-000605
TE6_OESOPHAGUS	TTC6--MIPOL1	5	1	TTC6	2242	chr14:38075947:+	MIPOL1	77335	chr14:37892060:+	ONLY_REF_SPLICE	YES	1	11	0.86	0.35	0.068	0.0136	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	TE6_OESOPHAGUS	0.35	0.86	0.0816	TRUE	0	4	0	4	2	TRUE	ACH-000605
TE6_OESOPHAGUS	MT-ND6--MT-TE	4	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.8	1	0.0544	0.0544	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	TE6_OESOPHAGUS	0.8	1	0.1088	FALSE	499	1288	110	792	0	FALSE	ACH-000605
TE6_OESOPHAGUS	LIMD1-AS1--PTER	4	0	LIMD1-AS1	3110	chr3:45721213:-	PTER	14362	chr10:16555003:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	LIMD1-AS1->LIMD1_antisense_RNA_1,chr3:45720535-45730626:-,PTER->chr10:16478942-16555736:+,phosphotriesterase_related	TE6_OESOPHAGUS	1	1	0.0544	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	DHCR7--DDB1	3	0	DHCR7	11432	chr11:71145954:-	DDB1	43332	chr11:61067480:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	DHCR7->7-dehydrocholesterol_reductase,chr11:71139239-71163914:-,DDB1->chr11:61066923-61110068:-,damage_specific_DNA_binding_protein_1	TE6_OESOPHAGUS	1	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	HNRNPAB--GPI	3	0	HNRNPAB	1519	chr5:177632026:+	GPI	12621	chr19:34857295:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	HNRNPAB->chr5:177631508-177638164:+,heterogeneous_nuclear_ribonucleoprotein_A/B,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	TE6_OESOPHAGUS	1	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	NUMA1--SRRM1	3	0	NUMA1	37402	chr11:71715301:-	SRRM1	52111	chr1:24976532:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0408	0	NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	TE6_OESOPHAGUS	1	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	TMX2--SHANK2	2	4	TMX2	1208	chr11:57480279:+	SHANK2	15433	chr11:70830078:-	ONLY_REF_SPLICE	YES	54	18	0.1	0.25	0.0272	0.0544	TMX2->chr11:57480072-57508445:+,thioredoxin_related_transmembrane_protein_2,SHANK2->SH3_and_multiple_ankyrin_repeat_domains_2,chr11:70313961-70963623:-	TE6_OESOPHAGUS	0.1	0.25	0.0816	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	RP11-123O10.4--GRIP1	2	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0.0272	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	TE6_OESOPHAGUS	1	1	0.0544	FALSE	93	270	15	244	0	FALSE	ACH-000605
TE6_OESOPHAGUS	ARHGAP19--GTPBP1	2	0	ARHGAP19	1085	chr10:99052329:-	GTPBP1	25012	chr22:39104850:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	ARHGAP19->Rho_GTPase_activating_protein_19,chr10:98978996-99052413:-,GTPBP1->GTP_binding_protein_1,chr22:39101728-39134304:+	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	BCAR3--ITPA	2	0	BCAR3	1081	chr1:94312626:-	ITPA	35631	chr20:3202487:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	BCAR3->breast_cancer_anti-estrogen_resistance_3,chr1:94027347-94312706:-,ITPA->chr20:3189514-3204516:+,inosine_triphosphatase	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	C7orf10--YLPM1	2	0	C7orf10	20736	chr7:40789096:+	YLPM1	50270	chr14:75295916:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	C7orf10->chr7:40174575-40900362:+,YLPM1->YLP_motif_containing_1,chr14:75230069-75322244:+	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	CCDC130--DPH1	2	0	CCDC130	1526	chr19:13843099:+	DPH1	25065	chr17:1945899:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	CCDC130->chr19:13842574-13874110:+,coiled-coil_domain_containing_130,DPH1->Oncogene{Bushman},chr17:1933404-1946724:+,diphthamide_biosynthesis_1	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	CDKL1--SPG20	2	0	CDKL1	5175	chr14:50862419:-	SPG20	33675	chr13:36910495:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	CDKL1->chr14:50796310-50883179:-,cyclin_dependent_kinase_like_1,SPG20->chr13:36875775-36944317:-,spastic_paraplegia_20_(Troyer_syndrome)	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	COL4A5--FUT10	2	0	COL4A5	21534	chrX:107840798:+	FUT10	66785	chr8:33230322:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	COL4A5->chrX:107683074-107940775:+,collagen_type_IV_alpha_5,FUT10->chr8:33228342-33330940:-,fucosyltransferase_10	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	COL4A6--TIAL1	2	0	COL4A6	23295	chrX:107433622:-	TIAL1	61499	chr10:121336262:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	COL4A6->chrX:107386780-107682727:-,collagen_type_IV_alpha_6,TIAL1->TIA1_cytotoxic_granule-associated_RNA_binding_protein-like_1,chr10:121334199-121356541:-	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	CPT1A--AP1G1	2	0	CPT1A	2423	chr11:68609243:-	AP1G1	47226	chr16:71790062:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-,AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	CREM--CCNY	2	0	CREM	18420	chr10:35495979:+	CCNY	25210	chr10:35537037:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NEIGHBORS[34067],CREM->cAMP_responsive_element_modulator,chr10:35415719-35501886:+,CCNY->chr10:35535953-35860852:+,cyclin_Y	TE6_OESOPHAGUS	1	1	0.0272	FALSE	0	0	0	1	0	FALSE	ACH-000605
TE6_OESOPHAGUS	CSTA--PDIA5	2	0	CSTA	2217	chr3:122056495:+	PDIA5	24931	chr3:122928046:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	CSTA->Oncogene{Bushman},chr3:122044091-122060819:+,cystatin_A,PDIA5->chr3:122785909-122944074:+,protein_disulfide_isomerase_family_A_member_5	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	DEGS1--PHF21A	2	0	DEGS1	2440	chr1:224371120:+	PHF21A	15057	chr11:46113774:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	DEGS1->chr1:224363458-224381143:+,delta(4)-desaturase,_sphingolipid_1,PHF21A->PHD_finger_protein_21A,chr11:45950871-46142985:-	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	FXR1--GMPS	2	0	FXR1	3131	chr3:180630524:+	GMPS	34231	chr3:155611307:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+,GMPS->Oncogene{Bushman},chr3:155588325-155661815:+,guanine_monophosphate_synthase	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	HAPLN3--CPNE3	2	0	HAPLN3	4847	chr15:89424588:-	CPNE3	13989	chr8:87527690:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	HAPLN3->chr15:89420519-89438857:-,hyaluronan_and_proteoglycan_link_protein_3,CPNE3->chr8:87497059-87573726:+,copine_3	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	LSR--FXYD3	2	0	LSR	4450	chr19:35749967:+	FXYD3	18941	chr19:35613669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	LSR->chr19:35739233-35758867:+,lipolysis_stimulated_lipoprotein_receptor,FXYD3->FXYD_domain_containing_ion_transport_regulator_3,chr19:35606732-35615228:+	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	8	1	1	2	TRUE	ACH-000605
TE6_OESOPHAGUS	MEIS2--C15orf41	1	4	MEIS2	12226	chr15:37329015:-	C15orf41	52960	chr15:37100525:+	ONLY_REF_SPLICE	YES	13	17	0.28	0.23	0.0136	0.0544	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Muscularis=1},LOCAL_INVERSION:-:+:[78957],MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,C15orf41->chr15:36871812-37102449:+,chromosome_15_open_reading_frame_41	TE6_OESOPHAGUS	0.23	0.28	0.068	TRUE	0	1	0	4	1	TRUE	ACH-000605
TE6_OESOPHAGUS	NCOR2--RPLP1	2	0	NCOR2	33723	chr12:124838639:-	RPLP1	62120	chr15:69747509:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	TE6_OESOPHAGUS	1	1	0.0272	FALSE	292	1546	117	613	0	FALSE	ACH-000605
TE6_OESOPHAGUS	OSBPL2--ZC3H14	2	0	OSBPL2	4460	chr20:60838747:+	ZC3H14	29171	chr14:89041037:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2,ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	PLEKHA7--TTC17	2	0	PLEKHA7	10153	chr11:16863094:-	TTC17	40103	chr11:43413015:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	PLEKHA7->chr11:16799842-17035990:-,pleckstrin_homology_domain_containing_A7,TTC17->chr11:43380482-43516483:+,tetratricopeptide_repeat_domain_17	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	POFUT2--SKIL	2	0	POFUT2	9316	chr21:46687505:-	SKIL	18000	chr3:170077487:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	POFUT2->chr21:46683843-46707813:-,protein_O-fucosyltransferase_2,SKIL->Oncogene{Bushman},SKI-like_proto-oncogene,chr3:170075466-170114623:+	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	PVT1--SUMF1	2	0	PVT1	8346	chr8:128903244:+	SUMF1	37269	chr3:4403938:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	RP11-152F13.7--SNX5	2	0	RP11-152F13.7	4756	chr15:82972259:+	SNX5	12305	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	RP11-152F13.7->chr15:82944773-82974312:+,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	RP11-662B19.2--WDR37	2	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	TE6_OESOPHAGUS	1	1	0.0272	TRUE	31	42	1	25	0	FALSE	ACH-000605
TE6_OESOPHAGUS	TCHP--SETDB1	2	0	TCHP	10436	chr12:110350877:+	SETDB1	40943	chr1:150923841:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	TCHP->chr12:110338069-110421646:+,trichoplein_keratin_filament_binding,SETDB1->SET_domain_bifurcated_1,chr1:150898739-150937213:+	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	TLE3--AKAP13	2	0	TLE3	19985	chr15:70343730:-	AKAP13	31385	chr15:86064659:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	TLE3->chr15:70340129-70390515:-,transducin_like_enhancer_of_split_3,AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	ZMPSTE24--MACF1	2	0	ZMPSTE24	3573	chr1:40726657:+	MACF1	36863	chr1:39747880:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	ZMPSTE24->chr1:40723779-40759856:+,zinc_metallopeptidase_STE24,MACF1->Oncogene{Bushman},chr1:39546988-39952849:+,microtubule-actin_crosslinking_factor_1	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	ZNF263--SEPT9	2	0	ZNF263	1141	chr16:3313883:+	SEPT9	52401	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	ZNF263->chr16:3313743-3351401:+,zinc_finger_protein_263,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	TE6_OESOPHAGUS	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000605
TE6_OESOPHAGUS	ACTN4--POTEA	1	2	ACTN4	1259	chr19:39138547:+	POTEA	36509	chr8:43211902:+	ONLY_REF_SPLICE	YES	130	0	0.02	1	0.0136	0.0272	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,POTEA->POTE_ankyrin_domain_family_member_A,chr8:43147626-43218661:+	TE6_OESOPHAGUS	0.02	1	0.0408	TRUE	0	0	0	1	0	FALSE	ACH-000605
TE6_OESOPHAGUS	ACTN4--POTEA	1	2	ACTN4	1259	chr19:39138547:+	POTEA	37723	chr8:43216186:+	ONLY_REF_SPLICE	YES	130	0	0.02	1	0.0136	0.0272	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,POTEA->POTE_ankyrin_domain_family_member_A,chr8:43147626-43218661:+	TE6_OESOPHAGUS	0.02	1	0.0408	TRUE	0	0	0	1	0	FALSE	ACH-000605
TE6_OESOPHAGUS	BRI3BP--UBC	1	2	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	3	28	0.5	0.1	0.0136	0.0272	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	TE6_OESOPHAGUS	0.1	0.5	0.0408	TRUE	5	99	5	34	0	FALSE	ACH-000605
TE6_OESOPHAGUS	TTC6--MIPOL1	1	2	TTC6	1162	chr14:38065213:+	MIPOL1	73587	chr14:37838722:+	ONLY_REF_SPLICE	NO	1	10	0.75	0.23	0.0136	0.0272	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	TE6_OESOPHAGUS	0.23	0.75	0.0408	TRUE	0	3	0	4	2	TRUE	ACH-000605
TE6_OESOPHAGUS	CPSF6--C9orf3	1	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	53	52	0.04	0.04	0.0136	0.0136	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	TE6_OESOPHAGUS	0.04	0.04	0.0272	TRUE	53	99	2	44	0	FALSE	ACH-000605
TE6_OESOPHAGUS	MYH10--PNPO	1	1	MYH10	35400	chr17:8393658:-	PNPO	51923	chr17:46023227:+	ONLY_REF_SPLICE	YES	51	29	0.04	0.06	0.0136	0.0136	MYH10->chr17:8377523-8534079:-,myosin,_heavy_chain_10,_non-muscle,PNPO->chr17:46018872-46025654:+,pyridoxamine_5'-phosphate_oxidase	TE6_OESOPHAGUS	0.04	0.06	0.0272	TRUE	0	0	0	1	0	FALSE	ACH-000605
IGR1_SKIN	AC145110.1--RP11-599B13.3	620	552	AC145110.1	1271	chr8:29606095:+	RP11-599B13.3	13197	chr17:7960940:-	INCL_NON_REF_SPLICE	YES	17	0	0.99	1	8.0575	7.1737	AC145110.1->chr8:29605825-29656008:+,RP11-599B13.3->chr17:7959543-7960939:-	IGR1_SKIN	0.99	1	15.2312	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	AC145110.1--RP11-599B13.3	424	466	AC145110.1	1271	chr8:29606095:+	RP11-599B13.3	14128	chr17:7960009:-	ONLY_REF_SPLICE	YES	17	0	0.98	1	5.5103	6.0561	AC145110.1->chr8:29605825-29656008:+,RP11-599B13.3->chr17:7959543-7960939:-	IGR1_SKIN	0.98	1	11.5664	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	AP003900.6--AC011718.2	166	12	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	2.1573	0.156	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	IGR1_SKIN	1	1	2.3133	TRUE	0	3	0	38	3	FALSE	ACH-000882
IGR1_SKIN	PQLC2--RP3-329E20.2	141	70	PQLC2	2806	chr1:19644335:+	RP3-329E20.2	12241	chr1:21593341:+	ONLY_REF_SPLICE	YES	98	3	0.68	0.99	1.8324	0.9097	PQLC2->PQ_loop_repeat_containing_2,chr1:19638820-19655794:+,RP3-329E20.2->chr1:21592575-21593744:+	IGR1_SKIN	0.68	0.99	2.7421	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	AC145110.1--RP11-599B13.3	4	466	AC145110.1	2581	chr8:29607405:+	RP11-599B13.3	14128	chr17:7960009:-	INCL_NON_REF_SPLICE	YES	22	0	0.96	1	0.052	6.0561	AC145110.1->chr8:29605825-29656008:+,RP11-599B13.3->chr17:7959543-7960939:-	IGR1_SKIN	0.96	1	6.1081	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	WIPI1--SLC16A5	95	60	WIPI1	5658	chr17:66440634:-	SLC16A5	23632	chr17:73089684:+	ONLY_REF_SPLICE	YES	0	1	1	0.99	1.2346	0.7798	WIPI1->WD_repeat_domain,_phosphoinositide_interacting_1,chr17:66417089-66453654:-,SLC16A5->chr17:73083822-73102257:+,solute_carrier_family_16_member_5	IGR1_SKIN	0.99	1	2.0144	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	KDM5A--LINC01054	53	20	KDM5A	18084	chr12:438001:-	LINC01054	43723	chr13:115096253:-	ONLY_REF_SPLICE	YES	31	0	0.7	1	0.6888	0.2599	KDM5A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:389295-498620:-,lysine_demethylase_5A,LINC01054->chr13:115095034-115099423:-,long_intergenic_non-protein_coding_RNA_1054	IGR1_SKIN	0.7	1	0.9487	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	3	194	MT-ND4	1519	chrM:11278:+	MT-ND4L	5394	chrM:10485:+	INCL_NON_REF_SPLICE	YES	1518	0	0.11	1	0.039	2.5212	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0.11	1	2.5602	FALSE	344	827	44	306	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	4	188	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	69	0	0.74	1	0.052	2.4432	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0.74	1	2.4952	FALSE	344	827	44	306	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	4	186	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	33	1	0.85	0.99	0.052	2.4172	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0.85	0.99	2.4692	FALSE	344	826	44	306	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	4	182	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	26	0	0.88	1	0.052	2.3653	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0.88	1	2.4173	FALSE	344	826	44	306	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	3	186	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	69	0	0.73	1	0.039	2.4172	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0.73	1	2.4562	FALSE	344	827	44	306	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	3	182	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	21	0	0.9	1	0.039	2.3653	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0.9	1	2.4043	FALSE	344	826	44	306	0	FALSE	ACH-000882
IGR1_SKIN	ITCH--RP11-410N8.1	44	6	ITCH	15725	chr20:33045279:+	RP11-410N8.1	35404	chr20:31181495:+	ONLY_REF_SPLICE	YES	36	0	0.58	1	0.5718	0.078	ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,RP11-410N8.1->chr20:31169765-31181702:+	IGR1_SKIN	0.58	1	0.6498	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	TIMM23B--LINC00843	43	8	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5588	0.104	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	IGR1_SKIN	1	1	0.6628	TRUE	508	994	45	981	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	10	129	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	10	0	0.93	1	0.13	1.6765	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0.93	1	1.8065	FALSE	344	821	44	306	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND6--MT-TE	40	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5198	0.065	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR1_SKIN	1	1	0.5848	FALSE	499	1288	110	792	0	FALSE	ACH-000882
IGR1_SKIN	MT-TA--MT-TC	40	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5198	0.026	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IGR1_SKIN	1	1	0.5458	FALSE	462	80	0	856	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	3	127	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	203	0	0.39	1	0.039	1.6505	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0.39	1	1.6895	FALSE	344	827	44	306	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ATP8	31	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15672	1	0	0.97	0.4029	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR1_SKIN	0	0.97	0.4289	FALSE	230	193	14	283	0	FALSE	ACH-000882
IGR1_SKIN	TIMM23--RP11-464F9.1	29	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	166	1	0.15	0.97	0.3769	0.013	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	IGR1_SKIN	0.15	0.97	0.3899	TRUE	519	3926	326	965	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO2	28	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	98	2	0.23	0.94	0.3639	0.026	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR1_SKIN	0.23	0.94	0.3899	FALSE	59	21	0	114	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	17	29	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	68	0	0.4	1	0.2209	0.3769	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0.4	1	0.5978	FALSE	344	826	44	306	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	11	46	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	13904	0	0	1	0.143	0.5978	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0	1	0.7408	FALSE	328	800	43	304	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND6--MT-TE	17	21	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.2209	0.2729	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR1_SKIN	0.9	1	0.4938	FALSE	499	1288	110	792	0	FALSE	ACH-000882
IGR1_SKIN	PQLC2--RP3-329E20.2	3	73	PQLC2	2806	chr1:19644335:+	RP3-329E20.2	11959	chr1:21593059:+	INCL_NON_REF_SPLICE	YES	98	3	0.44	0.96	0.039	0.9487	PQLC2->PQ_loop_repeat_containing_2,chr1:19638820-19655794:+,RP3-329E20.2->chr1:21592575-21593744:+	IGR1_SKIN	0.44	0.96	0.9877	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	SNAP25--DLGAP4	19	9	SNAP25	9316	chr20:10280060:+	DLGAP4	34868	chr20:35152653:+	ONLY_REF_SPLICE	YES	19	105	0.6	0.21	0.2469	0.117	SNAP25->chr20:10199478-10288066:+,synaptosome_associated_protein_25kDa,DLGAP4->chr20:34894258-35157040:+,discs_large_homolog_associated_protein_4	IGR1_SKIN	0.21	0.6	0.3639	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	13	30	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1735	0	0.02	1	0.1689	0.3899	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0.02	1	0.5588	FALSE	344	827	44	306	0	FALSE	ACH-000882
IGR1_SKIN	PQLC2--RP3-329E20.2	1	74	PQLC2	2806	chr1:19644335:+	RP3-329E20.2	11883	chr1:21592983:+	ONLY_REF_SPLICE	YES	98	0	0.43	1	0.013	0.9617	PQLC2->PQ_loop_repeat_containing_2,chr1:19638820-19655794:+,RP3-329E20.2->chr1:21592575-21593744:+	IGR1_SKIN	0.43	1	0.9747	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	ECE1--AKR7A2	16	9	ECE1	8534	chr1:21599192:-	AKR7A2	33089	chr1:19635136:-	ONLY_REF_SPLICE	YES	55	345	0.31	0.07	0.2079	0.117	ECE1->chr1:21543740-21671997:-,endothelin_converting_enzyme_1,AKR7A2->aldo-keto_reductase_family_7,_member_A2,chr1:19630459-19638640:-	IGR1_SKIN	0.07	0.31	0.3249	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	10	31	MT-ND4	1779	chrM:11538:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	8584	0	0	1	0.13	0.4029	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0	1	0.5329	FALSE	344	827	44	306	0	FALSE	ACH-000882
IGR1_SKIN	WIPI1--SLC16A5	3	59	WIPI1	5658	chr17:66440634:-	SLC16A5	23636	chr17:73089688:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.98	0.039	0.7668	WIPI1->WD_repeat_domain,_phosphoinositide_interacting_1,chr17:66417089-66453654:-,SLC16A5->chr17:73083822-73102257:+,solute_carrier_family_16_member_5	IGR1_SKIN	0.98	1	0.8058	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	3	58	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	10	0	0.86	1	0.039	0.7538	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0.86	1	0.7928	FALSE	344	821	44	306	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND6--MT-TE	13	18	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1689	0.2339	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR1_SKIN	1	1	0.4028	FALSE	499	1288	110	792	0	FALSE	ACH-000882
IGR1_SKIN	MIPEPP3--ABHD12	17	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2209	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	IGR1_SKIN	1	1	0.2209	TRUE	64	202	9	44	0	FALSE	ACH-000882
IGR1_SKIN	MT-TA--MT-TC	15	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1949	0.013	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IGR1_SKIN	1	1	0.2079	FALSE	462	80	0	856	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND6--MT-TE	4	41	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0.5328	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR1_SKIN	1	1	0.5848	FALSE	499	1288	110	792	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND6--MT-TE	13	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1689	0.065	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR1_SKIN	1	1	0.2339	FALSE	499	1288	110	792	0	FALSE	ACH-000882
IGR1_SKIN	AP003900.6--AC011718.2	9	19	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.117	0.2469	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	IGR1_SKIN	0.97	1	0.3639	TRUE	0	5	0	45	5	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	13	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	11297	30315	0	0	0.1689	0.026	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.1949	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND6--MT-TE	6	30	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.078	0.3899	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR1_SKIN	0.9	1	0.4679	FALSE	499	1288	110	792	0	FALSE	ACH-000882
IGR1_SKIN	VRK2--PUS10	11	10	VRK2	9971	chr2:58276102:+	PUS10	29633	chr2:61239040:-	ONLY_REF_SPLICE	YES	35	0	0.38	1	0.143	0.13	VRK2->chr2:58134786-58387055:+,vaccinia_related_kinase_2,PUS10->Oncogene{Bushman},chr2:61167357-61245394:-,pseudouridylate_synthase_10	IGR1_SKIN	0.38	1	0.273	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	AP003900.6--AC011718.2	12	1	AP003900.6	1122	chr21:11169841:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	0	9	1	0.59	0.156	0.013	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	IGR1_SKIN	0.59	1	0.169	TRUE	0	1	0	21	1	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO2	12	1	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	93	2	0.12	0.87	0.156	0.013	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR1_SKIN	0.12	0.87	0.169	FALSE	59	21	0	114	0	FALSE	ACH-000882
IGR1_SKIN	RP11-219G17.4--PLA2G6	12	0	RP11-219G17.4	2765	chr17:76267333:-	PLA2G6	39371	chr22:38509661:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.156	0	GTEx_FI:{Testis=[count:23=pct:21.9],Brain=[count:18=pct:2.7],Nerve=[count:11=pct:6.5],Thyroid=[count:8=pct:4.5],Ovary=[count:6=pct:11.3],Colon=[count:5=pct:2.6],Pancreas=[count:3=pct:1.7],Uterus=[count:2=pct:4.7],Spleen=[count:2=pct:1.8],Blood=[count:2=pct:1.1],Prostate=[count:2=pct:3.3],Vagina=[count:1=pct:1.8],Blood_Vessel=[count:1=pct:0.3],Muscle=[count:1=pct:0.4],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Whole_Blood=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},RP11-219G17.4->chr17:76257430-76274573:-,PLA2G6->chr22:38507502-38601697:-,phospholipase_A2_group_VI	IGR1_SKIN	1	1	0.156	TRUE	63	15	0	9	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	4	31	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8218	0	0	1	0.052	0.4029	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0	1	0.4549	FALSE	344	827	44	306	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO2	11	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	98	2	0.12	0.87	0.143	0.026	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR1_SKIN	0.12	0.87	0.169	FALSE	59	21	0	114	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	5	23	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	52	0	0.35	1	0.065	0.2989	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0.35	1	0.3639	FALSE	344	826	44	306	0	FALSE	ACH-000882
IGR1_SKIN	ITCH--RP11-410N8.4	8	10	ITCH	15725	chr20:33045279:+	RP11-410N8.4	35320	chr20:31189315:+	ONLY_REF_SPLICE	YES	36	0	0.33	1	0.104	0.13	ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,RP11-410N8.4->chr20:31175281-31196695:+	IGR1_SKIN	0.33	1	0.234	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	MT-ND6--MT-TE	3	30	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	5	0	0.87	1	0.039	0.3899	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR1_SKIN	0.87	1	0.4289	FALSE	499	1288	110	792	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	10	1	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	NO	5741	25165	0	0	0.13	0.013	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.143	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	3	29	MT-ND4	1213	chrM:10972:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	67	0	0.32	1	0.039	0.3769	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0.32	1	0.4159	FALSE	344	826	44	306	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	3	29	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1047	0	0.03	1	0.039	0.3769	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0.03	1	0.4159	FALSE	344	827	44	306	0	FALSE	ACH-000882
IGR1_SKIN	AP003900.6--AC011718.2	6	15	AP003900.6	2187	chr21:11172043:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.078	0.1949	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	IGR1_SKIN	0.91	1	0.2729	TRUE	0	0	0	21	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ATP8	9	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19395	6	0	0.67	0.117	0.039	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR1_SKIN	0	0.67	0.156	FALSE	231	217	16	283	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	3	27	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	9	0	0.77	1	0.039	0.3509	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0.77	1	0.3899	FALSE	344	821	44	306	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND6--MT-TE	9	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.117	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR1_SKIN	1	1	0.117	FALSE	499	1288	110	792	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	8	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13338	30280	0	0	0.104	0.026	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.13	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ATP8	8	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15755	6	0	0.62	0.104	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR1_SKIN	0	0.62	0.13	FALSE	230	198	14	283	0	FALSE	ACH-000882
IGR1_SKIN	C15orf57--CBX3	6	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	32	23	0.3	0.38	0.078	0.104	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	IGR1_SKIN	0.3	0.38	0.182	TRUE	267	562	48	632	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	8	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.104	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	1	1	0.104	FALSE	344	821	44	306	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	7	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	10568	26742	0	0	0.091	0.013	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.104	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	7	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	11180	29866	0	0	0.091	0.013	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.104	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO2	7	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	35	2	0.19	0.8	0.091	0.013	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR1_SKIN	0.19	0.8	0.104	FALSE	59	21	0	114	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	4	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	54	0	0.24	1	0.052	0.1689	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0.24	1	0.2209	FALSE	344	826	44	306	0	FALSE	ACH-000882
IGR1_SKIN	COPS2--SHC4	7	0	COPS2	1137	chr15:49447722:-	SHC4	21202	chr15:49217146:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.091	0	GTEx&tcga_normals:1/3694=0.03%,COPS2->COP9_signalosome_subunit_2,Oncogene{Bushman},chr15:49398268-49447858:-,SHC4->Oncogene{Bushman},SHC_(Src_homology_2_domain_containing)_family_member_4,chr15:49115932-49255641:-	IGR1_SKIN	1	1	0.091	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	6	3	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3663	30667	0	0	0.078	0.039	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.117	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	LDLRAD3--PRR5L	6	2	LDLRAD3	5673	chr11:36120011:+	PRR5L	17578	chr11:36317840:+	INCL_NON_REF_SPLICE	YES	43	0	0.16	1	0.078	0.026	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	IGR1_SKIN	0.16	1	0.104	FALSE	0	52	1	15	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	6	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	12745	27519	0	0	0.078	0.026	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.104	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	RP11-6N13.1--CTD-2374C24.1	6	2	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	17672	chr5:104582067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.078	0.026	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	IGR1_SKIN	1	1	0.104	TRUE	5	4	0	46	0	FALSE	ACH-000882
IGR1_SKIN	SLC7A5--MT-ND1	6	2	SLC7A5	13719	chr16:87864490:-	MT-ND1	17596	chrM:3322:+	INCL_NON_REF_SPLICE	YES	2887	0	0	1	0.078	0.026	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	IGR1_SKIN	0	1	0.104	FALSE	0	0	0	11	0	FALSE	ACH-000882
IGR1_SKIN	WIPI1--SLC16A5	2	18	WIPI1	5658	chr17:66440634:-	SLC16A5	24879	chr17:73094133:+	ONLY_REF_SPLICE	YES	0	44	1	0.31	0.026	0.2339	WIPI1->WD_repeat_domain,_phosphoinositide_interacting_1,chr17:66417089-66453654:-,SLC16A5->chr17:73083822-73102257:+,solute_carrier_family_16_member_5	IGR1_SKIN	0.31	1	0.2599	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	6	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10928	30280	0	0	0.078	0.013	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.091	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ATP8	5	5	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16602	76	0	0.12	0.065	0.065	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR1_SKIN	0	0.12	0.13	FALSE	231	217	16	283	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	3	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	173	0	0.08	1	0.039	0.1689	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	0.08	1	0.2079	FALSE	344	827	44	306	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND3--MT-ATP8	6	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.078	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR1_SKIN	1	1	0.078	FALSE	351	233	23	137	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	5	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0.052	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	1	1	0.117	FALSE	344	821	44	306	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.078	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR1_SKIN	1	1	0.078	FALSE	499	1288	110	792	0	FALSE	ACH-000882
IGR1_SKIN	ITCH--RP11-410N8.4	4	7	ITCH	15725	chr20:33045279:+	RP11-410N8.4	35356	chr20:31189351:+	INCL_NON_REF_SPLICE	YES	36	0	0.23	1	0.052	0.091	ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,RP11-410N8.4->chr20:31175281-31196695:+	IGR1_SKIN	0.23	1	0.143	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ATP8	5	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	19395	916	0	0.01	0.065	0.039	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR1_SKIN	0	0.01	0.104	FALSE	231	217	16	283	0	FALSE	ACH-000882
IGR1_SKIN	BNC2--LINC00032	5	2	BNC2	1198	chr9:16870644:-	LINC00032	34229	chr9:27278726:-	ONLY_REF_SPLICE	YES	2	1	0.78	0.88	0.065	0.026	BNC2->basonuclin_2,chr9:16409501-16870841:-,LINC00032->chr9:27245682-27282791:-,long_intergenic_non-protein_coding_RNA_32	IGR1_SKIN	0.78	0.88	0.091	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	5	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	11218	26977	0	0	0.065	0.026	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.091	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	5	2	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	11509	26267	0	0	0.065	0.026	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.091	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO2	5	2	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	103	2	0.06	0.78	0.065	0.026	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR1_SKIN	0.06	0.78	0.091	FALSE	59	21	0	114	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ATP8	5	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	15768	76	0	0.08	0.065	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR1_SKIN	0	0.08	0.091	FALSE	230	198	14	283	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ATP8	4	6	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2887	76	0	0.12	0.052	0.078	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR1_SKIN	0	0.12	0.13	FALSE	216	209	16	281	0	FALSE	ACH-000882
IGR1_SKIN	MT-TA--MT-TC	5	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0.026	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	IGR1_SKIN	1	1	0.091	FALSE	462	80	0	856	0	FALSE	ACH-000882
IGR1_SKIN	AP003900.6--AC011718.2	5	1	AP003900.6	2187	chr21:11172043:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	2	9	0.75	0.4	0.065	0.013	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	IGR1_SKIN	0.4	0.75	0.078	TRUE	0	0	0	4	0	TRUE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO2	5	1	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	36	2	0.14	0.75	0.065	0.013	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR1_SKIN	0.14	0.75	0.078	FALSE	59	21	0	114	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO2	5	1	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	62	2	0.09	0.75	0.065	0.013	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR1_SKIN	0.09	0.75	0.078	FALSE	59	21	0	114	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO2	5	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	35	2	0.15	0.75	0.065	0.013	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR1_SKIN	0.15	0.75	0.078	FALSE	59	21	0	114	0	FALSE	ACH-000882
IGR1_SKIN	BNC2--LINC00032	5	0	BNC2	1198	chr9:16870644:-	LINC00032	41619	chr9:27263263:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.065	0	BNC2->basonuclin_2,chr9:16409501-16870841:-,LINC00032->chr9:27245682-27282791:-,long_intergenic_non-protein_coding_RNA_32	IGR1_SKIN	1	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	BNC2--LINC00032	4	4	BNC2	1198	chr9:16870644:-	LINC00032	32735	chr9:27280919:-	INCL_NON_REF_SPLICE	YES	2	2	0.8	0.8	0.052	0.052	BNC2->basonuclin_2,chr9:16409501-16870841:-,LINC00032->chr9:27245682-27282791:-,long_intergenic_non-protein_coding_RNA_32	IGR1_SKIN	0.8	0.8	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ATP8	4	4	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	NO	17978	857	0	0.01	0.052	0.052	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR1_SKIN	0	0.01	0.104	FALSE	231	217	16	283	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ATP8	3	8	MT-ND4	2176	chrM:11935:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	8640	0	0	1	0.039	0.104	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR1_SKIN	0	1	0.143	FALSE	231	215	16	283	0	FALSE	ACH-000882
IGR1_SKIN	PFKM--MT-ND4L	5	0	PFKM	16513	chr12:48531603:+	MT-ND4L	27661	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.065	0	PFKM->chr12:48498922-48540187:+,phosphofructokinase,_muscle,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	1	1	0.065	FALSE	0	0	0	8	0	FALSE	ACH-000882
IGR1_SKIN	RP11-444D3.1--SOX5	5	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.065	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	IGR1_SKIN	1	1	0.065	TRUE	477	1352	189	275	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	4	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	13338	0	0	1	0.052	0.039	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	1	0.091	FALSE	182	97	9	327	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	4	3	MT-ATP6	1444	chrM:8970:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	11587	26695	0	0	0.052	0.039	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.091	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND6--MT-TE	3	7	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0.091	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR1_SKIN	1	1	0.13	FALSE	499	1288	110	792	0	FALSE	ACH-000882
IGR1_SKIN	E2F1--CBFA2T2	4	2	E2F1	1401	chr20:32273810:-	CBFA2T2	15797	chr20:32194762:+	ONLY_REF_SPLICE	YES	4	12	0.6	0.33	0.052	0.026	LOCAL_INVERSION:-:+:[25647],E2F1->E2F_transcription_factor_1,Oncogene{Bushman},chr20:32263489-32274210:-,CBFA2T2->CBFA2/RUNX1_translocation_partner_2,chr20:32077881-32237842:+	IGR1_SKIN	0.33	0.6	0.078	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	4	2	MT-ATP6	1150	chrM:8676:+	MT-CO1	5195	chrM:6417:+	INCL_NON_REF_SPLICE	YES	12783	26320	0	0	0.052	0.026	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.078	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	4	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	13338	27326	0	0	0.052	0.026	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.078	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ATP8	4	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18393	6	0	0.5	0.052	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR1_SKIN	0	0.5	0.078	FALSE	231	205	14	283	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ATP8	3	6	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	8553	555	0	0.02	0.039	0.078	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR1_SKIN	0	0.02	0.117	FALSE	231	215	16	283	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ATP8	4	2	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	20952	0	0	1	0.052	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR1_SKIN	0	1	0.078	FALSE	231	216	16	283	0	FALSE	ACH-000882
IGR1_SKIN	RP11-120D5.1--MID1	4	2	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	1	70	0.86	0.08	0.052	0.026	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	IGR1_SKIN	0.08	0.86	0.078	FALSE	0	9	0	55	0	FALSE	ACH-000882
IGR1_SKIN	AP003900.6--AC011718.2	3	5	AP003900.6	1122	chr21:11169841:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0.065	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	IGR1_SKIN	1	1	0.104	TRUE	0	1	0	26	1	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	4	1	MT-ATP6	1530	chrM:9056:+	MT-CO1	5890	chrM:7112:+	INCL_NON_REF_SPLICE	YES	5434	25097	0	0	0.052	0.013	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.065	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	4	1	MT-ATP6	1109	chrM:8635:+	MT-CO1	5172	chrM:6394:+	INCL_NON_REF_SPLICE	YES	11023	26518	0	0	0.052	0.013	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.065	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO2	4	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	66	2	0.07	0.71	0.052	0.013	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR1_SKIN	0.07	0.71	0.065	FALSE	59	21	0	114	0	FALSE	ACH-000882
IGR1_SKIN	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.052	0.013	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	IGR1_SKIN	1	1	0.065	FALSE	515	4851	409	746	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	3	4	MT-ATP6	1547	chrM:9073:+	MT-CO1	5163	chrM:6385:+	INCL_NON_REF_SPLICE	YES	4121	26705	0	0	0.039	0.052	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.091	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ATP8	3	4	MT-ND4	2282	chrM:12041:+	MT-ATP8	5515	chrM:8502:+	INCL_NON_REF_SPLICE	YES	30	1520	0.19	0	0.039	0.052	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR1_SKIN	0	0.19	0.091	FALSE	213	207	15	279	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	4	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	1	1	0.052	FALSE	344	821	44	306	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	IGR1_SKIN	1	1	0.052	FALSE	499	1288	110	792	0	FALSE	ACH-000882
IGR1_SKIN	PMEL--DGKA	4	0	PMEL	4690	chr12:56359720:-	DGKA	22112	chr12:56330207:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.052	0	LOCAL_INVERSION:-:+:[78],PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein,DGKA->chr12:56321103-56347811:+,diacylglycerol_kinase_alpha	IGR1_SKIN	1	1	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	SLC1A5--MT-ND4L	4	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	1	1	0.052	FALSE	0	0	0	189	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	3	3	MT-ATP6	1153	chrM:8679:+	MT-CO1	4732	chrM:5954:+	INCL_NON_REF_SPLICE	YES	12891	0	0	1	0.039	0.039	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	1	0.078	FALSE	182	97	9	327	0	FALSE	ACH-000882
IGR1_SKIN	EPB41L1--MIR663A	3	2	EPB41L1	24191	chr20:34785963:+	MIR663A	49158	chr20:26172399:-	ONLY_REF_SPLICE	YES	32	2	0.14	0.71	0.039	0.026	EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,MIR663A->chr20:26167556-26232162:-,microRNA_663a	IGR1_SKIN	0.14	0.71	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	3	2	MT-ATP6	1144	chrM:8670:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	12433	26977	0	0	0.039	0.026	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.065	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	3	2	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	11430	27268	0	0	0.039	0.026	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.065	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND3--MT-ATP8	3	2	MT-ND3	1283	chrM:10341:+	MT-ATP8	4411	chrM:8430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0.026	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR1_SKIN	1	1	0.065	FALSE	351	233	23	137	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND3--MT-ATP8	3	2	MT-ND3	1293	chrM:10351:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0.026	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR1_SKIN	1	1	0.065	FALSE	351	233	23	137	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ATP8	3	2	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	20748	0	0	1	0.039	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	IGR1_SKIN	0	1	0.065	FALSE	231	217	16	283	0	FALSE	ACH-000882
IGR1_SKIN	AP003900.6--AC011718.2	1	9	AP003900.6	2187	chr21:11172043:+	AC011718.2	11864	chr22:20653813:-	ONLY_REF_SPLICE	NO	2	0	0.83	1	0.013	0.117	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	IGR1_SKIN	0.83	1	0.13	TRUE	0	0	0	21	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	3	1	MT-ATP6	1082	chrM:8608:+	MT-CO1	5379	chrM:6601:+	INCL_NON_REF_SPLICE	YES	8708	30076	0	0	0.039	0.013	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.052	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5909	chrM:7131:+	INCL_NON_REF_SPLICE	YES	13338	23520	0	0	0.039	0.013	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.052	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO1	3	1	MT-ATP6	1115	chrM:8641:+	MT-CO1	5177	chrM:6399:+	INCL_NON_REF_SPLICE	NO	10994	26489	0	0	0.039	0.013	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	IGR1_SKIN	0	0	0.052	FALSE	183	104	9	328	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO2	3	1	MT-ATP6	1138	chrM:8664:+	MT-CO2	4988	chrM:7892:+	INCL_NON_REF_SPLICE	YES	89	5	0.04	0.44	0.039	0.013	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR1_SKIN	0.04	0.44	0.052	FALSE	59	21	0	114	0	FALSE	ACH-000882
IGR1_SKIN	MT-ATP6--MT-CO2	3	1	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	64	5	0.06	0.44	0.039	0.013	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	IGR1_SKIN	0.06	0.44	0.052	FALSE	59	21	0	114	0	FALSE	ACH-000882
IGR1_SKIN	RALGAPA2--E2F1	3	1	RALGAPA2	40578	chr20:20475761:-	E2F1	54868	chr20:32268222:-	ONLY_REF_SPLICE	YES	8	5	0.33	0.44	0.039	0.013	RALGAPA2->Ral_GTPase_activating_protein_catalytic_alpha_subunit_2,chr20:20370196-20693131:-,E2F1->E2F_transcription_factor_1,Oncogene{Bushman},chr20:32263489-32274210:-	IGR1_SKIN	0.33	0.44	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	RP11-123O10.4--GRIP1	3	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0.013	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	IGR1_SKIN	1	1	0.052	FALSE	416	2512	207	587	0	FALSE	ACH-000882
IGR1_SKIN	RP11-158I13.2--LINC00570	3	1	RP11-158I13.2	7883	chr2:27830906:+	LINC00570	23964	chr2:11542151:+	ONLY_REF_SPLICE	YES	24	0	0.14	1	0.039	0.013	RP11-158I13.2->chr2:27805913-27858041:+,LINC00570->chr2:11534107-11543203:+,long_intergenic_non-protein_coding_RNA_570	IGR1_SKIN	0.14	1	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	3	1	0.57	0.039	0.013	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	IGR1_SKIN	0.57	1	0.052	TRUE	465	1949	224	605	0	FALSE	ACH-000882
IGR1_SKIN	AP003900.6--AC011718.2	1	8	AP003900.6	1122	chr21:11169841:+	AC011718.2	11864	chr22:20653813:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.013	0.104	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	IGR1_SKIN	1	1	0.117	TRUE	0	3	0	38	3	FALSE	ACH-000882
IGR1_SKIN	IGFBP4--NPM1	3	0	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	IGR1_SKIN	1	1	0.039	TRUE	0	0	0	38	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	3	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	1	1	0.039	FALSE	344	821	44	306	0	FALSE	ACH-000882
IGR1_SKIN	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	IGR1_SKIN	1	1	0.039	FALSE	344	821	44	306	0	FALSE	ACH-000882
IGR1_SKIN	PMEL--DGKA	3	0	PMEL	4690	chr12:56359720:-	DGKA	22706	chr12:56330801:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	LOCAL_INVERSION:-:+:[78],PMEL->Oncogene{Bushman},chr12:56347889-56367101:-,premelanosome_protein,DGKA->chr12:56321103-56347811:+,diacylglycerol_kinase_alpha	IGR1_SKIN	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	RPS12--RNF149	3	0	RPS12	2887	chr6:133137702:+	RNF149	18657	chr2:101888206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	RPS12->chr6:133135580-133138703:+,ribosomal_protein_S12,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	IGR1_SKIN	1	1	0.039	TRUE	0	0	0	3	0	TRUE	ACH-000882
IGR1_SKIN	WIPI1--PRKAR1A	3	0	WIPI1	14701	chr17:66422216:-	PRKAR1A	22789	chr17:66511535:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.039	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Gastroesophageal_Junction=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[54267],WIPI1->WD_repeat_domain,_phosphoinositide_interacting_1,chr17:66417089-66453654:-,PRKAR1A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:66507921-66547460:+,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_alpha	IGR1_SKIN	1	1	0.039	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	EPB41L1--MIR663A	2	3	EPB41L1	24191	chr20:34785963:+	MIR663A	49025	chr20:26172532:-	ONLY_REF_SPLICE	YES	32	0	0.14	1	0.026	0.039	EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,MIR663A->chr20:26167556-26232162:-,microRNA_663a	IGR1_SKIN	0.14	1	0.065	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	RP11-6N13.1--CTD-2374C24.1	2	2	RP11-6N13.1	1210	chr5:104728462:-	CTD-2374C24.1	18748	chr5:104344612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0.026	GTEx_FI:{Testis=[count:9=pct:8.6]},RP11-6N13.1->chr5:103718999-104728671:-,CTD-2374C24.1->chr5:104253193-104582065:-	IGR1_SKIN	1	1	0.052	TRUE	5	12	0	42	0	FALSE	ACH-000882
IGR1_SKIN	RP11-141M1.3--STARD13	2	1	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	17	0.6	0.15	0.026	0.013	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	IGR1_SKIN	0.15	0.6	0.039	FALSE	49	120	16	70	0	FALSE	ACH-000882
IGR1_SKIN	CDK10--TUBB3	2	0	CDK10	3890	chr16:89753205:+	TUBB3	23419	chr16:89998979:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CDK10->chr16:89747145-89762772:+,cyclin-dependent_kinase_10,TUBB3->chr16:89985573-90002500:+,chr16:89987800-90005169:+,tubulin_beta_3_class_III	IGR1_SKIN	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	CHCHD3--NDUFB2	2	0	CHCHD3	5725	chr7:132709306:-	NDUFB2	27779	chr7:140402666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+	IGR1_SKIN	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	LDLRAD3--PRR5L	2	0	LDLRAD3	5673	chr11:36120011:+	PRR5L	34366	chr11:36422547:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	NEIGHBORS[64152],LDLRAD3->chr11:35965531-36253686:+,low_density_lipoprotein_receptor_class_A_domain_containing_3,PRR5L->chr11:36317838-36486754:+,proline_rich_5_like	IGR1_SKIN	1	1	0.026	FALSE	12	71	0	11	0	FALSE	ACH-000882
IGR1_SKIN	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	70	0.75	0.04	0.013	0.026	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	IGR1_SKIN	0.04	0.75	0.039	FALSE	16	356	14	466	0	FALSE	ACH-000882
IGR1_SKIN	BNC2--LINC00032	1	1	BNC2	1198	chr9:16870644:-	LINC00032	39360	chr9:27272086:-	ONLY_REF_SPLICE	YES	2	2	0.5	0.5	0.013	0.013	BNC2->basonuclin_2,chr9:16409501-16870841:-,LINC00032->chr9:27245682-27282791:-,long_intergenic_non-protein_coding_RNA_32	IGR1_SKIN	0.5	0.5	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	BNC2--LINC00032	1	1	BNC2	1198	chr9:16870644:-	LINC00032	38163	chr9:27274284:-	ONLY_REF_SPLICE	YES	2	2	0.5	0.5	0.013	0.013	BNC2->basonuclin_2,chr9:16409501-16870841:-,LINC00032->chr9:27245682-27282791:-,long_intergenic_non-protein_coding_RNA_32	IGR1_SKIN	0.5	0.5	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	C19orf70--ZHX1	1	1	C19orf70	2552	chr19:5679356:-	ZHX1	11434	chr8:124268411:-	ONLY_REF_SPLICE	YES	202	16	0.01	0.11	0.013	0.013	C19orf70->chr19:5678432-5680907:-,chromosome_19_open_reading_frame_70,ZHX1->chr8:124260696-124287781:-,zinc_fingers_and_homeoboxes_1	IGR1_SKIN	0.01	0.11	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000882
IGR1_SKIN	DCT--ZMYM5	1	1	DCT	8627	chr13:95112345:-	ZMYM5	26138	chr13:20409829:-	ONLY_REF_SPLICE	YES	5235	20	0	0.09	0.013	0.013	DCT->chr13:95089558-95131936:-,dopachrome_tautomerase,ZMYM5->chr13:20397622-20437776:-,zinc_finger_MYM-type_containing_5	IGR1_SKIN	0	0.09	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000882
IGR1_SKIN	EZH1--MYO18A	1	1	EZH1	17753	chr17:40858025:-	MYO18A	28767	chr17:27494039:-	ONLY_REF_SPLICE	YES	15	1	0.12	0.67	0.013	0.013	EZH1->chr17:40852293-40897071:-,enhancer_of_zeste_1_polycomb_repressive_complex_2_subunit,MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA	IGR1_SKIN	0.12	0.67	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	FN1--EIF4A2	1	1	FN1	41587	chr2:216238045:-	EIF4A2	60856	chr3:186506914:+	ONLY_REF_SPLICE	YES	2313	659	0	0	0.013	0.013	GTEx&tcga_normals:1/3694=0.03%,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2	IGR1_SKIN	0	0	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000882
IGR1_SKIN	JARID2--DTNBP1	1	1	JARID2	3478	chr6:15374483:+	DTNBP1	40179	chr6:15533626:-	ONLY_REF_SPLICE	YES	54	71	0.04	0.03	0.013	0.013	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=7;pct=0.08%;dist=Lung=1,Brain_-_Hippocampus=1,Artery_-_Coronary=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:+:-:[780],JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,DTNBP1->chr6:15523032-15663289:-,dystrobrevin_binding_protein_1	IGR1_SKIN	0.03	0.04	0.026	TRUE	0	0	0	1	0	FALSE	ACH-000882
IGR1_SKIN	JARID2--DTNBP1	1	1	JARID2	3478	chr6:15374483:+	DTNBP1	34515	chr6:15615630:-	ONLY_REF_SPLICE	YES	54	103	0.04	0.02	0.013	0.013	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=7;pct=0.08%;dist=Lung=1,Brain_-_Hippocampus=1,Artery_-_Coronary=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:+:-:[780],JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,DTNBP1->chr6:15523032-15663289:-,dystrobrevin_binding_protein_1	IGR1_SKIN	0.02	0.04	0.026	TRUE	0	0	0	1	0	FALSE	ACH-000882
IGR1_SKIN	MIR3916--CHTOP	1	1	MIR3916	1166	chr1:247373993:-	CHTOP	17764	chr1:153617540:+	ONLY_REF_SPLICE	YES	10	76	0.17	0.03	0.013	0.013	MIR3916->chr1:247353153-247374158:-,chr1:247365269-247365362:-,microRNA_3916,CHTOP->chr1:153606525-153618782:+,chromatin_target_of_PRMT1	IGR1_SKIN	0.03	0.17	0.026	TRUE	0	0	0	1	0	FALSE	ACH-000882
IGR1_SKIN	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	17	0.4	0.11	0.013	0.013	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	IGR1_SKIN	0.11	0.4	0.026	FALSE	141	264	50	91	0	FALSE	ACH-000882
IGR1_SKIN	RP11-158I13.2--LINC00570	1	1	RP11-158I13.2	7883	chr2:27830906:+	LINC00570	22878	chr2:11540498:+	ONLY_REF_SPLICE	YES	24	0	0.08	1	0.013	0.013	RP11-158I13.2->chr2:27805913-27858041:+,LINC00570->chr2:11534107-11543203:+,long_intergenic_non-protein_coding_RNA_570	IGR1_SKIN	0.08	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000882
IGR1_SKIN	RP11-634B7.4--TRIM58	1	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	17	1	0.11	0.013	0.013	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	IGR1_SKIN	0.11	1	0.026	TRUE	158	633	76	73	0	FALSE	ACH-000882
IGR1_SKIN	SF1--DCT	1	1	SF1	3289	chr11:64543970:-	DCT	20336	chr13:95118912:-	ONLY_REF_SPLICE	YES	178	5020	0.01	0	0.013	0.013	SF1->chr11:64532078-64546258:-,splicing_factor_1,DCT->chr13:95089558-95131936:-,dopachrome_tautomerase	IGR1_SKIN	0	0.01	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000882
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	1428	396	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	22.5327	6.2486	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	28.7813	TRUE	361	258	24	38	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	332	163	NPM1	4640	chr5:170818803:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	YES	1071	0	0.32	1	5.2387	2.572	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	1	7.8107	TRUE	0	0	0	6	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	37	410	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	5570	chr1:149591759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5838	6.4695	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	7.0533	TRUE	361	258	24	38	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	8	396	WI2-1896O14.1	2570	chr1:144676870:-	RP11-353N4.1	6356	chr1:149590973:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1262	6.2486	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	6.3748	TRUE	361	258	24	38	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	75	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1834	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1834	TRUE	0	0	0	518	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARPC1B--KPNA7	46	19	ARPC1B	12188	chr7:98990499:+	KPNA7	20031	chr7:98792961:-	ONLY_REF_SPLICE	YES	738	0	0.08	1	0.7258	0.2998	ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,KPNA7->chr7:98771197-98805129:-,karyopherin_subunit_alpha_7	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	1.0256	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LIX1L--MSRB2	40	23	LIX1L	2530	chr1:145487467:+	MSRB2	13170	chr10:23393073:+	ONLY_REF_SPLICE	YES	31	260	0.67	0.2	0.6312	0.3629	LIX1L->chr1:145477085-145501669:+,limb_and_CNS_expressed_1_like,MSRB2->chr10:23384435-23410942:+,methionine_sulfoxide_reductase_B2	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.67	0.9941	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CALM3--MYL6	43	1	CALM3	4231	chr19:47109114:+	MYL6	12975	chr12:56553371:+	ONLY_REF_SPLICE	YES	1145	45	0.04	0.49	0.6785	0.0158	HGNC_GENEFAM,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.49	0.6943	TRUE	0	0	0	8	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	39	8	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6154	0.1262	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7416	TRUE	508	994	45	981	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIP4K2A--NEBL	33	16	PIP4K2A	1373	chr10:23003112:-	NEBL	51173	chr10:21117563:-	ONLY_REF_SPLICE	YES	21	0	0.7	1	0.5207	0.2525	PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha,NEBL->chr10:21068902-21463116:-,nebulette	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	1	0.7732	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-284F21.7--FLG2	20	36	RP11-284F21.7	2243	chr1:156616814:-	FLG2	6810	chr1:152331382:-	INCL_NON_REF_SPLICE	YES	61	0	0.48	1	0.3156	0.5681	RP11-284F21.7->chr1:156616299-156631216:-,FLG2->chr1:152321211-152332482:-,filaggrin_family_member_2	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	0.8837	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LIX1L--MSRB2	26	8	LIX1L	1366	chr1:145477450:+	MSRB2	13170	chr10:23393073:+	ONLY_REF_SPLICE	YES	16	260	0.68	0.12	0.4103	0.1262	LIX1L->chr1:145477085-145501669:+,limb_and_CNS_expressed_1_like,MSRB2->chr10:23384435-23410942:+,methionine_sulfoxide_reductase_B2	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.68	0.5365	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	22	17	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	26	23	0.6	0.63	0.3471	0.2682	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	0.63	0.6153	TRUE	181	1564	124	196	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	22	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3471	0.0316	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3787	FALSE	462	80	0	856	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	1	86	NPM1	4265	chr5:170818428:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	NO	1257	0	0.06	1	0.0158	1.357	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	1.3728	TRUE	0	0	0	6	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	22	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3471	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3471	FALSE	499	1288	110	792	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FLG-AS1--BCAN	21	0	FLG-AS1	19684	chr1:152338798:+	BCAN	25911	chr1:156616814:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3314	0	FLG-AS1->FLG_antisense_RNA_1,chr1:152140601-152339163:+,BCAN->brevican,chr1:156611182-156629324:+	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3314	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	18	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.284	0.1262	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.4102	FALSE	499	1288	110	792	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	19	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2998	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2998	TRUE	519	3926	326	965	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	18	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.284	0.0158	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2998	FALSE	499	1288	110	792	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LIX1L--MSRB2	12	8	LIX1L	2530	chr1:145487467:+	MSRB2	14271	chr10:23399171:+	ONLY_REF_SPLICE	YES	31	317	0.39	0.06	0.1894	0.1262	LIX1L->chr1:145477085-145501669:+,limb_and_CNS_expressed_1_like,MSRB2->chr10:23384435-23410942:+,methionine_sulfoxide_reductase_B2	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.39	0.3156	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	9	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	79	18	0.22	0.55	0.142	0.2051	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.55	0.3471	TRUE	267	562	48	632	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	9	3	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	17	1	0.41	0.142	0.0473	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	1	0.1893	TRUE	347	1186	183	220	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	8	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1262	0.0316	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1578	FALSE	462	80	0	856	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1217--AL353583.1	7	2	KIAA1217	19679	chr10:24790474:+	AL353583.1	38684	chr10:24770585:-	INCL_NON_REF_SPLICE	YES	55	0	0.14	1	0.1105	0.0316	NEIGHBORS_OVERLAP:+:-:[359],KIAA1217->KIAA1217,chr10:23983675-24836772:+,AL353583.1->chr10:24770273-24770632:-	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.1421	FALSE	0	0	0	1	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	1	24	NPM1	1891	chr5:170815010:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	NO	1199	0	0.02	1	0.0158	0.3787	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.3945	TRUE	0	0	0	3	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0.0947	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1736	FALSE	499	1288	110	792	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARPC1B--KPNA7	1	21	ARPC1B	12188	chr7:98990499:+	KPNA7	19203	chr7:98793789:-	ONLY_REF_SPLICE	YES	738	0	0.03	1	0.0158	0.3314	ARPC1B->actin_related_protein_2/3_complex_subunit_1B,chr7:98971872-98992424:+,KPNA7->chr7:98771197-98805129:-,karyopherin_subunit_alpha_7	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.3472	TRUE	0	0	0	1	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FLG-AS1--BCAN	6	1	FLG-AS1	19684	chr1:152338798:+	BCAN	25782	chr1:156616685:+	INCL_NON_REF_SPLICE	YES	15	17	0.32	0.29	0.0947	0.0158	FLG-AS1->FLG_antisense_RNA_1,chr1:152140601-152339163:+,BCAN->brevican,chr1:156611182-156629324:+	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.32	0.1105	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	6	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1707	0	0	1	0.0947	0.0158	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1105	FALSE	0	0	0	189	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	3	1	0.8	0.0631	0.1262	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.1893	FALSE	515	4851	409	746	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	79	18	0.14	0.42	0.0473	0.1578	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.42	0.2051	TRUE	267	562	48	632	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIP4K2A--NEBL	1	16	PIP4K2A	6137	chr10:22935148:-	NEBL	51173	chr10:21117563:-	ONLY_REF_SPLICE	YES	23	0	0.42	1	0.0158	0.2525	PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha,NEBL->chr10:21068902-21463116:-,nebulette	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.2683	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0.1262	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1578	FALSE	407	2205	196	549	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0473	FALSE	499	1288	110	792	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OTUD5--TEX101	3	0	OTUD5	7431	chrX:48783123:-	TEX101	14523	chr19:43906918:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0473	0	GTEx&tcga_normals:3/3694=0.08%,GTEx_FI:{Skin=[count:4=pct:1.3],Brain=[count:2=pct:0.3],Spleen=[count:2=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Small_Intestine=[count:2=pct:3.6],Heart=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Whole_Blood=[count:1=pct:0.8],Pituitary=[count:1=pct:1.9]},GTEx_v2:{count=56;pct=0.65%;dist=Skin_-_Sun_Exposed_(Lower_leg)=6,Nerve_-_Tibial=6,Lung=4,Artery_-_Aorta=4,Esophagus_-_Muscularis=4,Small_Intestine_-_Terminal_Ileum=3,Artery_-_Coronary=3,Cells_-_EBV-transformed_lymphocytes=3,Whole_Blood=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Thyroid=2,Adipose_-_Subcutaneous=2,Spleen=2,Brain_-_Cerebellum=2,Testis=2,Artery_-_Tibial=1,Liver=1,Pituitary=1,Adipose_-_Visceral_(Omentum)=1,Adrenal_Gland=1,Brain_-_Cerebellar_Hemisphere=1,Heart_-_Atrial_Appendage=1},OTUD5->OTU_deubiquitinase_5,chrX:48779305-48815648:-,TEX101->chr19:43905648-43922763:+,testis_expressed_101	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0473	TRUE	19	21	0	1	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0158	0.1262	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.142	FALSE	275	511	55	178	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	6	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	26	23	0.21	0.23	0.0158	0.0947	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.23	0.1105	TRUE	105	90	7	93	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIP4K2A--NEBL	1	6	PIP4K2A	1373	chr10:23003112:-	NEBL	52278	chr10:21115468:-	ONLY_REF_SPLICE	YES	21	3	0.25	0.7	0.0158	0.0947	PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha,NEBL->chr10:21068902-21463116:-,nebulette	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.7	0.1105	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	2	1	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0316	0.0158	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0474	TRUE	67	49	0	25	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HLA-DQB1--DENND3	2	0	HLA-DQB1	3582	chr6:32632575:-	DENND3	39194	chr8:142195238:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	HLA-DQB1->chr6:32627244-32636160:-,major_histocompatibility_complex,_class_II,_DQ_beta_1,DENND3->DENN_domain_containing_3,chr8:142127377-142205907:+	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0316	FALSE	0	0	0	1	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0316	FALSE	16	356	14	466	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	2	0	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0316	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0316	TRUE	37	101	7	40	0	FALSE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIP4K2A--NEBL	1	1	PIP4K2A	1373	chr10:23003112:-	NEBL	59676	chr10:21101869:-	ONLY_REF_SPLICE	YES	21	5	0.09	0.29	0.0158	0.0158	PIP4K2A->chr10:22823778-23003484:-,phosphatidylinositol-5-phosphate_4-kinase_type_2_alpha,NEBL->chr10:21068902-21463116:-,nebulette	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.29	0.0316	TRUE	0	0	0	1	0	TRUE	ACH-000053
KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB2--ARHGAP15	1	1	ZEB2	5479	chr2:145274845:-	ARHGAP15	64991	chr2:144381702:+	ONLY_REF_SPLICE	YES	66	309	0.03	0.01	0.0158	0.0158	GTEx&tcga_normals:11/3694=0.30%,GTEx:0.08%,GTEx_FI:{Blood=[count:17=pct:9.8],Whole_Blood=[count:16=pct:12.1],Nerve=[count:6=pct:3.5],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=48;pct=0.55%;dist=Whole_Blood=23,Nerve_-_Tibial=9,Spleen=4,Lung=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Uterus=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1},ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,ARHGAP15->Rho_GTPase_activating_protein_15,chr2:143848931-144525921:+	KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0316	FALSE	15	6	0	3	0	FALSE	ACH-000053
MFE280_ENDOMETRIUM	RGL3--ECSIT	145	62	RGL3	3957	chr19:11526613:-	ECSIT	27762	chr19:11617243:-	ONLY_REF_SPLICE	YES	48	25	0.81	0.89	1.9467	0.8324	LOCAL_REARRANGEMENT:-:[86713],RGL3->chr19:11495017-11530018:-,ral_guanine_nucleotide_dissociation_stimulator_like_3,ECSIT->ECSIT_signalling_integrator,chr19:11616731-11639989:-	MFE280_ENDOMETRIUM	0.81	0.89	2.7791	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	KDM2A--SYT12	143	36	KDM2A	2906	chr11:66888829:+	SYT12	37848	chr11:66789340:+	ONLY_REF_SPLICE	YES	12	1	0.94	0.99	1.9198	0.4833	YOSHIHARA_TCGA_num_samples[BRCA:1|GBM:1],LOCAL_REARRANGEMENT:+:[68406],KDM2A->chr11:66886740-67025558:+,lysine_demethylase_2A,SYT12->chr11:66774249-66818334:+,synaptotagmin_12	MFE280_ENDOMETRIUM	0.94	0.99	2.4031	TRUE	0	1	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SUPT6H--SLC13A2	109	61	SUPT6H	3678	chr17:26999876:+	SLC13A2	37788	chr17:26818748:+	ONLY_REF_SPLICE	YES	215	2	0.44	0.99	1.4634	0.8189	SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	MFE280_ENDOMETRIUM	0.44	0.99	2.2823	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	CDC42--CELA3A	113	41	CDC42	4088	chr1:22405076:+	CELA3A	14952	chr1:22329496:+	ONLY_REF_SPLICE	YES	503	0	0.23	1	1.5171	0.5504	LOCAL_REARRANGEMENT:+:[40088],CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,CELA3A->chr1:22328149-22339032:+,chymotrypsin_like_elastase_family_member_3A	MFE280_ENDOMETRIUM	0.23	1	2.0675	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ELMSAN1--FGD5	100	34	ELMSAN1	4154	chr14:74226466:-	FGD5	43376	chr3:14963425:+	ONLY_REF_SPLICE	YES	2	2	0.99	0.99	1.3425	0.4565	ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-,FGD5->FYVE,_RhoGEF_and_PH_domain_containing_5,chr3:14860469-14975895:+	MFE280_ENDOMETRIUM	0.99	0.99	1.799	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ELMSAN1--FGD5	98	17	ELMSAN1	2618	chr14:74253805:-	FGD5	43376	chr3:14963425:+	ONLY_REF_SPLICE	YES	1	2	0.99	0.98	1.3157	0.2282	ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-,FGD5->FYVE,_RhoGEF_and_PH_domain_containing_5,chr3:14860469-14975895:+	MFE280_ENDOMETRIUM	0.98	0.99	1.5439	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RP11-191L9.4--ATXN10	67	35	RP11-191L9.4	2387	chr22:48031102:+	ATXN10	28069	chr22:46202839:+	ONLY_REF_SPLICE	YES	1	173	0.99	0.37	0.8995	0.4699	RP11-191L9.4->chr22:48027423-48251349:+,ATXN10->ataxin_10,chr22:46067678-46241187:+	MFE280_ENDOMETRIUM	0.37	0.99	1.3694	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MGAT4A--AC109826.1	70	22	MGAT4A	5043	chr2:99294767:-	AC109826.1	28686	chr2:99385509:-	ONLY_REF_SPLICE	YES	61	1	0.6	0.99	0.9398	0.2954	LOCAL_REARRANGEMENT:-:[30812],MGAT4A->chr2:99235569-99347589:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_A,AC109826.1->chr2:99378401-99388543:-	MFE280_ENDOMETRIUM	0.6	0.99	1.2352	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	CHMP6--RPTOR	62	37	CHMP6	5952	chr17:78972220:+	RPTOR	49307	chr17:78931424:+	ONLY_REF_SPLICE	YES	28	23	0.78	0.81	0.8324	0.4967	LOCAL_REARRANGEMENT:+:[25227],CHMP6->charged_multivesicular_body_protein_6,chr17:78965398-78983317:+,RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1	MFE280_ENDOMETRIUM	0.78	0.81	1.3291	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	COPB2--COL26A1	60	17	COPB2	21266	chr3:139077840:-	COL26A1	36180	chr7:101192452:+	ONLY_REF_SPLICE	YES	334	22	0.19	0.78	0.8055	0.2282	COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2,COL26A1->chr7:101006101-101202304:+,collagen_type_XXVI_alpha_1	MFE280_ENDOMETRIUM	0.19	0.78	1.0337	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ZNF654--HMGB2	60	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8055	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MFE280_ENDOMETRIUM	1	1	0.8055	TRUE	0	0	0	518	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	FAM13B--BRD8	58	4	FAM13B	11409	chr5:137342679:-	BRD8	37776	chr5:137506098:-	ONLY_REF_SPLICE	YES	35	174	0.64	0.26	0.7787	0.0537	LOCAL_REARRANGEMENT:-:[87805],FAM13B->chr5:137273649-137387650:-,family_with_sequence_similarity_13_member_B,BRD8->bromodomain_containing_8,chr5:137475455-137514675:-	MFE280_ENDOMETRIUM	0.26	0.64	0.8324	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	HIF1A--RP11-47I22.3	48	30	HIF1A	15201	chr14:62207906:+	RP11-47I22.3	25003	chr14:62117680:+	ONLY_REF_SPLICE	YES	221	0	0.26	1	0.6444	0.4028	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	MFE280_ENDOMETRIUM	0.26	1	1.0472	TRUE	0	1	0	1	1	TRUE	ACH-000192
MFE280_ENDOMETRIUM	GON4L--DDX19B	48	17	GON4L	10048	chr1:155790397:-	DDX19B	46887	chr16:70346512:+	ONLY_REF_SPLICE	YES	23	70	0.74	0.48	0.6444	0.2282	GON4L->chr1:155719508-155829191:-,gon-4_like,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	MFE280_ENDOMETRIUM	0.48	0.74	0.8726	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	NUFIP2--MIR4523	47	10	NUFIP2	1336	chr17:27620801:-	MIR4523	19024	chr17:27697323:-	ONLY_REF_SPLICE	YES	128	0	0.31	1	0.631	0.1343	LOCAL_INVERSION:-:-,chr17:[75599],NUFIP2->chr17:27582854-27621136:-,nuclear_fragile_X_mental_retardation_protein_interacting_protein_2,MIR4523->chr17:27696735-27717795:-,chr17:27717680-27717748:+,microRNA_4523	MFE280_ENDOMETRIUM	0.31	1	0.7653	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	NIPBL--WDR70	43	17	NIPBL	24322	chr5:37010327:+	WDR70	66342	chr5:37697757:+	ONLY_REF_SPLICE	YES	22	17	0.73	0.78	0.5773	0.2282	NIPBL->NIPBL,_cohesin_loading_factor,Oncogene{Bushman},chr5:36876861-37066515:+,WDR70->WD_repeat_domain_70,chr5:37379314-37753537:+	MFE280_ENDOMETRIUM	0.73	0.78	0.8055	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	TAF9--RP11-241G9.3	45	9	TAF9	7559	chr5:68651476:-	RP11-241G9.3	15053	chr5:68773502:-	ONLY_REF_SPLICE	YES	234	0	0.19	1	0.6041	0.1208	TAF9->TATA-box_binding_protein_associated_factor_9,chr5:68646811-68665840:-,RP11-241G9.3->chr5:68773299-68798293:-	MFE280_ENDOMETRIUM	0.19	1	0.7249	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	IMMT--PLGLB1	37	32	IMMT	2923	chr2:86408422:-	PLGLB1	29183	chr2:87230280:-	ONLY_REF_SPLICE	YES	94	0	0.42	1	0.4967	0.4296	IMMT->chr2:86371055-86422893:-,inner_membrane_mitochondrial_protein,PLGLB1->chr2:87229682-87248975:-,plasminogen-like_B1	MFE280_ENDOMETRIUM	0.42	1	0.9263	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SUPT6H--SLC13A2	26	68	SUPT6H	3701	chr17:26999899:+	SLC13A2	37476	chr17:26818436:+	INCL_NON_REF_SPLICE	YES	218	0	0.3	1	0.3491	0.9129	SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+,SLC13A2->chr17:26800311-26824799:+,solute_carrier_family_13_member_2	MFE280_ENDOMETRIUM	0.3	1	1.262	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PLEKHG1--MTHFD1L	38	7	PLEKHG1	3260	chr6:150971922:+	MTHFD1L	38926	chr6:151239713:+	ONLY_REF_SPLICE	YES	0	51	1	0.47	0.5102	0.094	NEIGHBORS[21886],PLEKHG1->chr6:150920999-151164799:+,pleckstrin_homology_and_RhoGEF_domain_containing_G1,MTHFD1L->chr6:151186685-151423023:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_1-like	MFE280_ENDOMETRIUM	0.47	1	0.6042	FALSE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	SMARCC1--CELSR3	35	17	SMARCC1	30620	chr3:47651556:-	CELSR3	43862	chr3:48694781:-	ONLY_REF_SPLICE	YES	96	21	0.35	0.71	0.4699	0.2282	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,CELSR3->cadherin_EGF_LAG_seven-pass_G-type_receptor_3,chr3:48673902-48700348:-	MFE280_ENDOMETRIUM	0.35	0.71	0.6981	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	BRD8--ETF1	39	0	BRD8	6330	chr5:137506034:-	ETF1	38797	chr5:137846318:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5236	0	BRD8->bromodomain_containing_8,chr5:137475455-137514675:-,ETF1->chr5:137841784-137878989:-,eukaryotic_translation_termination_factor_1	MFE280_ENDOMETRIUM	1	1	0.5236	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND6--MT-TE	38	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5102	0.0134	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE280_ENDOMETRIUM	1	1	0.5236	FALSE	499	1288	110	792	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	RP11-123O10.4--GRIP1	37	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4967	0.0537	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MFE280_ENDOMETRIUM	1	1	0.5504	FALSE	416	2512	207	587	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	NUMB--HEATR4	34	8	NUMB	7519	chr14:73876645:-	HEATR4	53170	chr14:73959828:-	ONLY_REF_SPLICE	YES	39	0	0.52	1	0.4565	0.1074	LOCAL_REARRANGEMENT:-:[14841],NUMB->NUMB,_endocytic_adaptor_protein,chr14:73741815-73930348:-,HEATR4->HEAT_repeat_containing_4,chr14:73945189-74025651:-	MFE280_ENDOMETRIUM	0.52	1	0.5639	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	CALM3--MYL6	25	0	CALM3	4231	chr19:47109114:+	MYL6	12975	chr12:56553371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3356	0	HGNC_GENEFAM,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6	MFE280_ENDOMETRIUM	1	1	0.3356	TRUE	0	0	0	8	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	IMMT--PLGLB1	13	42	IMMT	2923	chr2:86408422:-	PLGLB1	29132	chr2:87230331:-	INCL_NON_REF_SPLICE	YES	94	0	0.37	1	0.1745	0.5639	IMMT->chr2:86371055-86422893:-,inner_membrane_mitochondrial_protein,PLGLB1->chr2:87229682-87248975:-,plasminogen-like_B1	MFE280_ENDOMETRIUM	0.37	1	0.7384	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RGL3--ECSIT	8	60	RGL3	3947	chr19:11526623:-	ECSIT	27762	chr19:11617243:-	ONLY_REF_SPLICE	YES	47	25	0.59	0.73	0.1074	0.8055	LOCAL_REARRANGEMENT:-:[86713],RGL3->chr19:11495017-11530018:-,ral_guanine_nucleotide_dissociation_stimulator_like_3,ECSIT->ECSIT_signalling_integrator,chr19:11616731-11639989:-	MFE280_ENDOMETRIUM	0.59	0.73	0.9129	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND6--MT-TE	19	15	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.2551	0.2014	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE280_ENDOMETRIUM	0.89	1	0.4565	FALSE	499	1288	110	792	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	ABI2--CYP20A1	19	14	ABI2	5910	chr2:204231767:+	CYP20A1	45807	chr2:204110569:+	ONLY_REF_SPLICE	YES	70	36	0.32	0.48	0.2551	0.188	LOCAL_REARRANGEMENT:+:[29933],ABI2->abl-interactor_2,chr2:204192942-204312446:+,CYP20A1->chr2:204103663-204163009:+,cytochrome_P450_family_20_subfamily_A_member_1	MFE280_ENDOMETRIUM	0.32	0.48	0.4431	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	REV3L--GTF3C6	21	5	REV3L	20973	chr6:111693799:-	GTF3C6	52000	chr6:111283595:+	ONLY_REF_SPLICE	YES	47	242	0.36	0.1	0.2819	0.0671	REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,GTF3C6->chr6:111279763-111289093:+,general_transcription_factor_IIIC_subunit_6	MFE280_ENDOMETRIUM	0.1	0.36	0.349	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RGL3--ECSIT	5	67	RGL3	5150	chr19:11521929:-	ECSIT	27762	chr19:11617243:-	ONLY_REF_SPLICE	YES	54	25	0.57	0.74	0.0671	0.8995	LOCAL_REARRANGEMENT:-:[86713],RGL3->chr19:11495017-11530018:-,ral_guanine_nucleotide_dissociation_stimulator_like_3,ECSIT->ECSIT_signalling_integrator,chr19:11616731-11639989:-	MFE280_ENDOMETRIUM	0.57	0.74	0.9666	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND6--MT-TE	20	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2685	0.0134	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE280_ENDOMETRIUM	1	1	0.2819	FALSE	499	1288	110	792	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	TIMM23B--LINC00843	18	3	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2417	0.0403	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MFE280_ENDOMETRIUM	1	1	0.282	TRUE	508	994	45	981	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	IMMT--PLGLB1	10	33	IMMT	2923	chr2:86408422:-	PLGLB1	29172	chr2:87230291:-	INCL_NON_REF_SPLICE	YES	94	0	0.31	1	0.1343	0.443	IMMT->chr2:86371055-86422893:-,inner_membrane_mitochondrial_protein,PLGLB1->chr2:87229682-87248975:-,plasminogen-like_B1	MFE280_ENDOMETRIUM	0.31	1	0.5773	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PDDC1--CHID1	13	21	PDDC1	6959	chr11:770993:-	CHID1	30552	chr11:870499:-	ONLY_REF_SPLICE	YES	43	85	0.44	0.29	0.1745	0.2819	LOCAL_REARRANGEMENT:-:[89869],PDDC1->Parkinson_disease_7_domain_containing_1,chr11:767220-777488:-,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	MFE280_ENDOMETRIUM	0.29	0.44	0.4564	TRUE	0	1	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PLXDC1--TAF13	18	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2417	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	MFE280_ENDOMETRIUM	1	1	0.2417	TRUE	7	10	0	216	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	RGL3--ECSIT	13	18	RGL3	3282	chr19:11527288:-	ECSIT	27762	chr19:11617243:-	ONLY_REF_SPLICE	YES	68	25	0.31	0.55	0.1745	0.2417	LOCAL_REARRANGEMENT:-:[86713],RGL3->chr19:11495017-11530018:-,ral_guanine_nucleotide_dissociation_stimulator_like_3,ECSIT->ECSIT_signalling_integrator,chr19:11616731-11639989:-	MFE280_ENDOMETRIUM	0.31	0.55	0.4162	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	NPM1P24--SET	16	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2148	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MFE280_ENDOMETRIUM	1	1	0.2148	TRUE	0	0	0	434	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	PDDC1--CHID1	12	16	PDDC1	6619	chr11:771333:-	CHID1	30552	chr11:870499:-	ONLY_REF_SPLICE	YES	51	85	0.35	0.25	0.1611	0.2148	LOCAL_REARRANGEMENT:-:[89869],PDDC1->Parkinson_disease_7_domain_containing_1,chr11:767220-777488:-,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	MFE280_ENDOMETRIUM	0.25	0.35	0.3759	TRUE	0	1	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	BRD1--DENND6B	14	4	BRD1	15303	chr22:50170682:-	DENND6B	23396	chr22:50757432:-	ONLY_REF_SPLICE	YES	26	9	0.41	0.67	0.188	0.0537	BRD1->bromodomain_containing_1,chr22:50166931-50221160:-,DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-	MFE280_ENDOMETRIUM	0.41	0.67	0.2417	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	BLMH--MYO15B	12	11	BLMH	11462	chr17:28593903:-	MYO15B	30619	chr17:73601945:+	ONLY_REF_SPLICE	YES	142	12	0.14	0.66	0.1611	0.1477	BLMH->bleomycin_hydrolase,chr17:28575218-28619074:-,MYO15B->chr17:73584139-73622929:+,myosin_XVB	MFE280_ENDOMETRIUM	0.14	0.66	0.3088	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	14	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	12045	2	0	0.88	0.188	0.0134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.88	0.2014	FALSE	230	193	14	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	HEY2--RP1-293L8.2	12	8	HEY2	4715	chr6:126075692:+	RP1-293L8.2	14071	chr6:126038604:+	ONLY_REF_SPLICE	YES	4	0	0.83	1	0.1611	0.1074	LOCAL_REARRANGEMENT:+:[27446],HEY2->chr6:126068810-126082415:+,hes_related_family_bHLH_transcription_factor_with_YRPW_motif_2,RP1-293L8.2->chr6:125995499-126041364:+	MFE280_ENDOMETRIUM	0.83	1	0.2685	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	OR51S1--TP53I11	14	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.188	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	MFE280_ENDOMETRIUM	1	1	0.188	TRUE	402	216	10	229	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	RP11-773D16.1--RAPGEF4	13	3	RP11-773D16.1	4616	chr10:81568515:-	RAPGEF4	13233	chr2:173659753:+	ONLY_REF_SPLICE	YES	16	1	0.5	0.94	0.1745	0.0403	RP11-773D16.1->chr10:81563813-81586350:-,RAPGEF4->Rap_guanine_nucleotide_exchange_factor_4,chr2:173600002-173917621:+	MFE280_ENDOMETRIUM	0.5	0.94	0.2148	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SH3BP5-AS1--ZBTB3	13	2	SH3BP5-AS1	4033	chr3:15298723:+	ZBTB3	16077	chr11:62515907:-	INCL_NON_REF_SPLICE	YES	41	0	0.27	1	0.1745	0.0269	SH3BP5-AS1->SH3BP5_antisense_RNA_1,chr3:15295691-15306000:+,ZBTB3->chr11:62515791-62521660:-,zinc_finger_and_BTB_domain_containing_3	MFE280_ENDOMETRIUM	0.27	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ITGBL1--RP11-78F17.1	12	5	ITGBL1	9242	chr13:102250649:+	RP11-78F17.1	27861	chr18:1159180:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.1611	0.0671	ITGBL1->chr13:102104966-102375456:+,integrin_subunit_beta_like_1,RP11-78F17.1->chr18:976590-1174824:+	MFE280_ENDOMETRIUM	0.89	1	0.2282	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MPP7--PARD3	11	5	MPP7	3349	chr10:28591790:-	PARD3	61298	chr10:34420511:-	ONLY_REF_SPLICE	YES	1	19	0.94	0.46	0.1477	0.0671	MPP7->chr10:28339922-28623415:-,membrane_palmitoylated_protein_7,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator	MFE280_ENDOMETRIUM	0.46	0.94	0.2148	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	11	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	14054	44	0	0.27	0.1477	0.0671	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.27	0.2148	FALSE	231	217	16	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	REV3L--GTF3C6	11	5	REV3L	22376	chr6:111688829:-	GTF3C6	52000	chr6:111283595:+	INCL_NON_REF_SPLICE	YES	79	242	0.17	0.06	0.1477	0.0671	REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,GTF3C6->chr6:111279763-111289093:+,general_transcription_factor_IIIC_subunit_6	MFE280_ENDOMETRIUM	0.06	0.17	0.2148	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	TIMM23--RP11-464F9.1	12	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1611	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MFE280_ENDOMETRIUM	1	1	0.1611	TRUE	519	3926	326	965	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	TMEM163--THSD7B	12	0	TMEM163	2387	chr2:135470770:-	THSD7B	33646	chr2:138030103:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1611	0	TMEM163->chr2:135213330-135476570:-,transmembrane_protein_163,THSD7B->chr2:137523115-138435287:+,thrombospondin_type_1_domain_containing_7B	MFE280_ENDOMETRIUM	1	1	0.1611	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RP11-307C19.2--HMG20A	11	1	RP11-307C19.2	1207	chr15:77861518:+	HMG20A	14752	chr15:77764125:+	ONLY_REF_SPLICE	YES	0	26	1	0.32	0.1477	0.0134	LOCAL_REARRANGEMENT:+:[83363],RP11-307C19.2->chr15:77861312-77901023:+,HMG20A->chr15:77712754-77777949:+,high_mobility_group_20A	MFE280_ENDOMETRIUM	0.32	1	0.1611	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PDDC1--CHID1	5	24	PDDC1	7638	chr11:770314:-	CHID1	30552	chr11:870499:-	ONLY_REF_SPLICE	YES	35	85	0.45	0.25	0.0671	0.3222	LOCAL_REARRANGEMENT:-:[89869],PDDC1->Parkinson_disease_7_domain_containing_1,chr11:767220-777488:-,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	MFE280_ENDOMETRIUM	0.25	0.45	0.3893	TRUE	0	1	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PIK3R3--MKNK1	10	4	PIK3R3	4696	chr1:46546314:-	MKNK1	27323	chr1:47050475:-	ONLY_REF_SPLICE	YES	58	55	0.19	0.2	0.1343	0.0537	PIK3R3->chr1:46505812-46642160:-,phosphoinositide-3-kinase_regulatory_subunit_3,MKNK1->MAP_kinase_interacting_serine/threonine_kinase_1,chr1:47023090-47082515:-	MFE280_ENDOMETRIUM	0.19	0.2	0.188	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND6--MT-TE	6	18	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.86	1	0.0806	0.2417	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE280_ENDOMETRIUM	0.86	1	0.3223	FALSE	499	1288	110	792	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	YTHDC2--RP11-254I22.3	9	6	YTHDC2	25017	chr5:112917406:+	RP11-254I22.3	36141	chr5:95550671:-	INCL_NON_REF_SPLICE	YES	15	0	0.5	1	0.1208	0.0806	YTHDC2->YTH_domain_containing_2,chr5:112849380-112930982:+,RP11-254I22.3->chr5:95549050-95550779:-	MFE280_ENDOMETRIUM	0.5	1	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	BCAS4--THAP8	10	1	BCAS4	3454	chr20:49446917:+	THAP8	14358	chr19:36530620:-	ONLY_REF_SPLICE	YES	34	15	0.24	0.42	0.1343	0.0134	BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,THAP8->THAP_domain_containing_8,chr19:36525887-36545664:-	MFE280_ENDOMETRIUM	0.24	0.42	0.1477	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-ATP6--MT-CO1	10	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	9517	20543	0	0	0.1343	0.0134	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MFE280_ENDOMETRIUM	0	0	0.1477	FALSE	183	104	9	328	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	PDDC1--CHID1	5	21	PDDC1	7273	chr11:770679:-	CHID1	30552	chr11:870499:-	ONLY_REF_SPLICE	YES	35	85	0.43	0.23	0.0671	0.2819	LOCAL_REARRANGEMENT:-:[89869],PDDC1->Parkinson_disease_7_domain_containing_1,chr11:767220-777488:-,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	MFE280_ENDOMETRIUM	0.23	0.43	0.349	TRUE	0	1	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SMG1--CTA-363E6.2	9	5	SMG1	1505	chr16:18937272:-	CTA-363E6.2	72086	chr16:19407571:-	ONLY_REF_SPLICE	YES	13	0	0.52	1	0.1208	0.0671	SMG1->SMG1_phosphatidylinositol_3-kinase-related_kinase,chr16:18816175-18937776:-,CTA-363E6.2->chr16:19354969-19413015:-	MFE280_ENDOMETRIUM	0.52	1	0.1879	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SLC22A17--MYH7	8	8	SLC22A17	4485	chr14:23818481:-	MYH7	11551	chr14:23903458:-	ONLY_REF_SPLICE	YES	28	0	0.36	1	0.1074	0.1074	LOCAL_REARRANGEMENT:-:[59826],SLC22A17->chr14:23815515-23822121:-,solute_carrier_family_22_member_17,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	MFE280_ENDOMETRIUM	0.36	1	0.2148	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-ATP6--MT-CO1	9	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9612	21299	0	0	0.1208	0.0134	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MFE280_ENDOMETRIUM	0	0	0.1342	FALSE	183	104	9	328	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-RNR2	9	1	MT-ND4	1209	chrM:10968:+	MT-RNR2	5415	chrM:1707:+	INCL_NON_REF_SPLICE	NO	12047	0	0	1	0.1208	0.0134	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MFE280_ENDOMETRIUM	0	1	0.1342	FALSE	13	19	3	21	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	ADAM32--ADAM9	9	0	ADAM32	1844	chr8:38965352:+	ADAM9	61921	chr8:38959382:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1208	0	HGNC_GENEFAM,PROTCLUST,LOCAL_REARRANGEMENT:+:[1846],ADAM32->ADAM_metallopeptidase_domain_32,chr8:38964509-39142430:+,ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+	MFE280_ENDOMETRIUM	1	1	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	KMT2B--DMRT1	9	0	KMT2B	4699	chr19:36212706:+	DMRT1	31054	chr9:967985:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1208	0	KMT2B->chr19:36208921-36229779:+,lysine_methyltransferase_2B,DMRT1->chr9:841690-969090:+,doublesex_and_mab-3_related_transcription_factor_1	MFE280_ENDOMETRIUM	1	1	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	8	4	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	14727	1452	0	0.01	0.1074	0.0537	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.01	0.1611	FALSE	231	217	16	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	8	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14889	4	0	0.75	0.1074	0.0537	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.75	0.1611	FALSE	231	217	16	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	CHST3--AGPAT3	8	3	CHST3	1330	chr10:73724452:+	AGPAT3	35588	chr21:45397927:+	ONLY_REF_SPLICE	YES	3	47	0.79	0.19	0.1074	0.0403	CHST3->carbohydrate_(chondroitin_6)_sulfotransferase_3,chr10:73724123-73773322:+,AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+	MFE280_ENDOMETRIUM	0.19	0.79	0.1477	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-ATP6--MT-CO1	8	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11561	21030	0	0	0.1074	0.0403	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MFE280_ENDOMETRIUM	0	0	0.1477	FALSE	183	104	9	328	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	7	6	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	14607	1	0	0.93	0.094	0.0806	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.93	0.1746	FALSE	231	217	16	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	SLC22A17--MYH7	6	10	SLC22A17	5251	chr14:23817715:-	MYH7	11551	chr14:23903458:-	ONLY_REF_SPLICE	YES	19	0	0.46	1	0.0806	0.1343	LOCAL_REARRANGEMENT:-:[59826],SLC22A17->chr14:23815515-23822121:-,solute_carrier_family_22_member_17,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	MFE280_ENDOMETRIUM	0.46	1	0.2149	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	AP000525.9--LA16c-60G3.6	8	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	13	0	0.41	1	0.1074	0.0134	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	MFE280_ENDOMETRIUM	0.41	1	0.1208	TRUE	0	42	0	133	42	FALSE	ACH-000192
MFE280_ENDOMETRIUM	ELMSAN1--FGD5	7	5	ELMSAN1	2618	chr14:74253805:-	FGD5	49540	chr3:14974084:+	ONLY_REF_SPLICE	YES	1	57	0.92	0.17	0.094	0.0671	ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-,FGD5->FYVE,_RhoGEF_and_PH_domain_containing_5,chr3:14860469-14975895:+	MFE280_ENDOMETRIUM	0.17	0.92	0.1611	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ELMSAN1--FGD5	6	9	ELMSAN1	2618	chr14:74253805:-	FGD5	43869	chr3:14963918:+	ONLY_REF_SPLICE	YES	1	4	0.94	0.79	0.0806	0.1208	ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-,FGD5->FYVE,_RhoGEF_and_PH_domain_containing_5,chr3:14860469-14975895:+	MFE280_ENDOMETRIUM	0.79	0.94	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	KIAA0907--SSR2	8	1	KIAA0907	1768	chr1:155903424:-	SSR2	25680	chr1:155981678:-	ONLY_REF_SPLICE	YES	272	1114	0.03	0.01	0.1074	0.0134	LOCAL_REARRANGEMENT:-:[74648],KIAA0907->KIAA0907,chr1:155882834-155904191:-,SSR2->chr1:155978839-155990750:-,signal_sequence_receptor,_beta_(translocon-associated_protein_beta)	MFE280_ENDOMETRIUM	0.01	0.03	0.1208	TRUE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	8	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12044	4	0	0.69	0.1074	0.0134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.69	0.1208	FALSE	230	198	14	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	RP11-120D5.1--MID1	8	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	10	0.56	0.47	0.1074	0.0134	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MFE280_ENDOMETRIUM	0.47	0.56	0.1208	FALSE	16	356	14	466	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	PSMD4--PIP5K1A	8	0	PSMD4	1106	chr1:151227284:+	PIP5K1A	16262	chr1:151196724:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1074	0	LOCAL_REARRANGEMENT:+:[5167],PSMD4->chr1:151227179-151239955:+,proteasome_26S_subunit,_non-ATPase_4,PIP5K1A->chr1:151170425-151222012:+,phosphatidylinositol-4-phosphate_5-kinase_type_1_alpha	MFE280_ENDOMETRIUM	1	1	0.1074	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND6--MT-TE	4	15	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	5	0	0.79	1	0.0537	0.2014	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE280_ENDOMETRIUM	0.79	1	0.2551	FALSE	499	1288	110	792	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	DNAJC28--GART	7	2	DNAJC28	3281	chr21:34861106:-	GART	18274	chr21:34896569:-	INCL_NON_REF_SPLICE	YES	5	122	0.64	0.07	0.094	0.0269	LOCAL_REARRANGEMENT:-:[12211],DNAJC28->DnaJ_heat_shock_protein_family_(Hsp40)_member_C28,chr21:34860497-34864027:-,GART->chr21:34876238-34915797:-,phosphoribosylglycinamide_formyltransferase,_phosphoribosylglycinamide_synthetase,_phosphoribosylaminoimidazole_synthetase	MFE280_ENDOMETRIUM	0.07	0.64	0.1209	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-RNR2	7	2	MT-ND4	1303	chrM:11062:+	MT-RNR2	5933	chrM:2225:+	INCL_NON_REF_SPLICE	YES	15853	6958	0	0	0.094	0.0269	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MFE280_ENDOMETRIUM	0	0	0.1209	FALSE	13	19	3	21	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND6--MT-TE	3	18	MT-ND6	1327	chrM:14347:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.84	1	0.0403	0.2417	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE280_ENDOMETRIUM	0.84	1	0.282	FALSE	499	1288	110	792	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND6--MT-TE	3	18	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.0403	0.2417	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE280_ENDOMETRIUM	0.81	1	0.282	FALSE	499	1288	110	792	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	RP11-191L9.4--ATXN10	4	14	RP11-191L9.4	1213	chr22:48027635:+	ATXN10	28069	chr22:46202839:+	ONLY_REF_SPLICE	YES	10	173	0.64	0.09	0.0537	0.188	RP11-191L9.4->chr22:48027423-48251349:+,ATXN10->ataxin_10,chr22:46067678-46241187:+	MFE280_ENDOMETRIUM	0.09	0.64	0.2417	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SLX4--ADCY9	6	6	SLX4	4401	chr16:3656475:-	ADCY9	30444	chr16:4043511:-	ONLY_REF_SPLICE	YES	10	12	0.55	0.5	0.0806	0.0806	SLX4->SLX4_structure-specific_endonuclease_subunit,chr16:3631182-3661599:-,ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-	MFE280_ENDOMETRIUM	0.5	0.55	0.1612	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	WDR76--PDIA3	6	6	WDR76	4550	chr15:44128414:+	PDIA3	23717	chr15:44048847:+	ONLY_REF_SPLICE	YES	74	869	0.14	0.01	0.0806	0.0806	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:+:[53684],WDR76->WD_repeat_domain_76,chr15:44119161-44160617:+,PDIA3->chr15:44038590-44065477:+,protein_disulfide_isomerase_family_A_member_3	MFE280_ENDOMETRIUM	0.01	0.14	0.1612	TRUE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	BLMH--MYO15B	4	13	BLMH	11462	chr17:28593903:-	MYO15B	30259	chr17:73601585:+	ONLY_REF_SPLICE	YES	142	8	0.11	0.68	0.0537	0.1745	BLMH->bleomycin_hydrolase,chr17:28575218-28619074:-,MYO15B->chr17:73584139-73622929:+,myosin_XVB	MFE280_ENDOMETRIUM	0.11	0.68	0.2282	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	7	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12106	44	0	0.15	0.094	0.0134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.15	0.1074	FALSE	230	198	14	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	ZNF30--KAT7	7	1	ZNF30	4717	chr19:35424627:+	KAT7	11364	chr17:47865986:+	INCL_NON_REF_SPLICE	YES	26	0	0.24	1	0.094	0.0134	ZNF30->chr19:35417807-35436074:+,zinc_finger_protein_30,KAT7->chr17:47865917-47906458:+,lysine_acetyltransferase_7	MFE280_ENDOMETRIUM	0.24	1	0.1074	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND3--MT-ATP8	7	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.094	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	1	1	0.094	FALSE	351	233	23	137	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	PDDC1--CHID1	3	16	PDDC1	6619	chr11:771333:-	CHID1	29111	chr11:874910:-	ONLY_REF_SPLICE	YES	51	94	0.27	0.17	0.0403	0.2148	LOCAL_REARRANGEMENT:-:[89869],PDDC1->Parkinson_disease_7_domain_containing_1,chr11:767220-777488:-,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	MFE280_ENDOMETRIUM	0.17	0.27	0.2551	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PIK3R3--MKNK1	6	4	PIK3R3	4696	chr1:46546314:-	MKNK1	28623	chr1:47049001:-	ONLY_REF_SPLICE	YES	58	59	0.15	0.14	0.0806	0.0537	PIK3R3->chr1:46505812-46642160:-,phosphoinositide-3-kinase_regulatory_subunit_3,MKNK1->MAP_kinase_interacting_serine/threonine_kinase_1,chr1:47023090-47082515:-	MFE280_ENDOMETRIUM	0.14	0.15	0.1343	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	TMEM150C--SEC31A	7	0	TMEM150C	1452	chr4:83483059:-	SEC31A	30224	chr4:83785751:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.094	0	TMEM150C->chr4:83404323-83483510:-,transmembrane_protein_150C,SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-	MFE280_ENDOMETRIUM	1	1	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RAD50--PDLIM4	6	3	RAD50	3519	chr5:131895059:+	PDLIM4	34820	chr5:131598302:+	ONLY_REF_SPLICE	YES	37	21	0.2	0.3	0.0806	0.0403	RAD50->ArcherDX_panel,FoundationOne_panel,RAD50_double_strand_break_repair_protein,chr5:131891711-131980313:+,PDLIM4->PDZ_and_LIM_domain_4,chr5:131593364-131609147:+	MFE280_ENDOMETRIUM	0.2	0.3	0.1209	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RGL3--ECSIT	4	11	RGL3	3060	chr19:11527510:-	ECSIT	27762	chr19:11617243:-	ONLY_REF_SPLICE	YES	89	25	0.14	0.38	0.0537	0.1477	LOCAL_REARRANGEMENT:-:[86713],RGL3->chr19:11495017-11530018:-,ral_guanine_nucleotide_dissociation_stimulator_like_3,ECSIT->ECSIT_signalling_integrator,chr19:11616731-11639989:-	MFE280_ENDOMETRIUM	0.14	0.38	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ATAD2B--ITSN2	6	2	ATAD2B	15171	chr2:24080285:-	ITSN2	85056	chr2:24443935:-	ONLY_REF_SPLICE	YES	6	5	0.57	0.62	0.0806	0.0269	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Hypothalamus=1},ATAD2B->ATPase_family,_AAA_domain_containing_2B,chr2:23971534-24149984:-,ITSN2->chr2:24425733-24583583:-,intersectin_2	MFE280_ENDOMETRIUM	0.57	0.62	0.1075	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-CO1--MT-ND2	6	2	MT-CO1	1564	chrM:6467:+	MT-ND2	5972	chrM:4899:+	INCL_NON_REF_SPLICE	YES	18109	11431	0	0	0.0806	0.0269	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MFE280_ENDOMETRIUM	0	0	0.1075	FALSE	55	19	1	13	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND5--MT-ND6	6	2	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	3996	1	0	0.0806	0.0269	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	MFE280_ENDOMETRIUM	0	1	0.1075	FALSE	26	124	4	93	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	6	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	12260	1	0	0.88	0.0806	0.0134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.88	0.094	FALSE	231	204	14	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	PDDC1--CHID1	1	21	PDDC1	6959	chr11:770993:-	CHID1	29111	chr11:874910:-	ONLY_REF_SPLICE	YES	43	94	0.34	0.19	0.0134	0.2819	LOCAL_REARRANGEMENT:-:[89869],PDDC1->Parkinson_disease_7_domain_containing_1,chr11:767220-777488:-,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	MFE280_ENDOMETRIUM	0.19	0.34	0.2953	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	6	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0806	0.0134	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MFE280_ENDOMETRIUM	1	1	0.094	FALSE	515	4851	409	746	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	6	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0806	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	1	1	0.0806	FALSE	231	204	14	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	5	4	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	15473	1	0	0.9	0.0671	0.0537	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.9	0.1208	FALSE	231	205	14	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MTATP6P1--MT-ND1	6	0	MTATP6P1	1158	chr1:569233:+	MT-ND1	5165	chrM:3790:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0806	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	MFE280_ENDOMETRIUM	1	1	0.0806	FALSE	16	0	0	13	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ATP6--MT-CO1	4	7	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3038	21543	0	0	0.0537	0.094	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MFE280_ENDOMETRIUM	0	0	0.1477	FALSE	183	104	9	328	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	ABI2--CYP20A1	4	6	ABI2	5910	chr2:204231767:+	CYP20A1	47883	chr2:204116690:+	ONLY_REF_SPLICE	YES	70	42	0.12	0.19	0.0537	0.0806	LOCAL_REARRANGEMENT:+:[29933],ABI2->abl-interactor_2,chr2:204192942-204312446:+,CYP20A1->chr2:204103663-204163009:+,cytochrome_P450_family_20_subfamily_A_member_1	MFE280_ENDOMETRIUM	0.12	0.19	0.1343	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	CDC42--CELA3A	5	2	CDC42	4088	chr1:22405076:+	CELA3A	19107	chr1:22336198:+	ONLY_REF_SPLICE	YES	503	8	0.01	0.47	0.0671	0.0269	LOCAL_REARRANGEMENT:+:[40088],CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,CELA3A->chr1:22328149-22339032:+,chymotrypsin_like_elastase_family_member_3A	MFE280_ENDOMETRIUM	0.01	0.47	0.094	FALSE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	HIF1A--RP11-47I22.3	1	18	HIF1A	15201	chr14:62207906:+	RP11-47I22.3	26059	chr14:62120341:+	ONLY_REF_SPLICE	NO	221	0	0.08	1	0.0134	0.2417	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	MFE280_ENDOMETRIUM	0.08	1	0.2551	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	NME5--CDC23	5	2	NME5	6258	chr5:137454507:-	CDC23	16860	chr5:137534471:-	ONLY_REF_SPLICE	YES	27	71	0.21	0.09	0.0671	0.0269	LOCAL_REARRANGEMENT:-:[48207],NME5->NME/NM23_family_member_5,chr5:137450866-137475132:-,CDC23->cell_division_cycle_23,chr5:137523339-137549032:-	MFE280_ENDOMETRIUM	0.09	0.21	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0671	0.0269	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MFE280_ENDOMETRIUM	1	1	0.094	FALSE	407	2205	196	549	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	GON4L--DDX19B	2	13	GON4L	10048	chr1:155790397:-	DDX19B	48033	chr16:70348805:+	ONLY_REF_SPLICE	YES	23	53	0.39	0.22	0.0269	0.1745	GON4L->chr1:155719508-155829191:-,gon-4_like,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	MFE280_ENDOMETRIUM	0.22	0.39	0.2014	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MFE280_ENDOMETRIUM	1	1	0.0671	FALSE	13	9	0	364	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	4	4	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	17895	696	0	0.01	0.0537	0.0537	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.01	0.1074	FALSE	231	217	16	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-RNR2	4	4	MT-ND4	1754	chrM:11513:+	MT-RNR2	5925	chrM:2217:+	INCL_NON_REF_SPLICE	YES	14612	7127	0	0	0.0537	0.0537	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MFE280_ENDOMETRIUM	0	0	0.1074	FALSE	13	19	3	21	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MTATP6P1--MT-ND1	5	0	MTATP6P1	1126	chr1:569201:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	MFE280_ENDOMETRIUM	1	1	0.0671	FALSE	16	0	0	13	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0671	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MFE280_ENDOMETRIUM	1	1	0.0671	TRUE	0	0	0	434	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	ARSB--FHL2	4	3	ARSB	5737	chr5:78251118:-	FHL2	26309	chr2:106002997:-	ONLY_REF_SPLICE	YES	14	27	0.33	0.21	0.0537	0.0403	ARSB->arylsulfatase_B,chr5:78073032-78281910:-,FHL2->Oncogene{Bushman},chr2:105974169-106054970:-,four_and_a_half_LIM_domains_2	MFE280_ENDOMETRIUM	0.21	0.33	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	BCAS4--THAP8	4	3	BCAS4	3454	chr20:49446917:+	THAP8	13940	chr19:36531038:-	ONLY_REF_SPLICE	YES	34	17	0.17	0.29	0.0537	0.0403	BCAS4->Oncogene{Bushman},breast_carcinoma_amplified_sequence_4,chr20:49411431-49493714:+,THAP8->THAP_domain_containing_8,chr19:36525887-36545664:-	MFE280_ENDOMETRIUM	0.17	0.29	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	HIF1A--RP11-47I22.3	4	3	HIF1A	14640	chr14:62207345:+	RP11-47I22.3	25003	chr14:62117680:+	ONLY_REF_SPLICE	YES	206	0	0.03	1	0.0537	0.0403	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	MFE280_ENDOMETRIUM	0.03	1	0.094	TRUE	0	1	0	1	1	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ATP6--MT-CO1	3	7	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	NO	5400	18708	0	0	0.0403	0.094	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MFE280_ENDOMETRIUM	0	0	0.1343	FALSE	183	104	9	328	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	GALNT16--EXD2	4	2	GALNT16	11075	chr14:69800317:+	EXD2	28911	chr14:69676141:+	ONLY_REF_SPLICE	YES	17	15	0.26	0.29	0.0537	0.0269	LOCAL_REARRANGEMENT:+:[16919],GALNT16->chr14:69725994-69821183:+,polypeptide_N-acetylgalactosaminyltransferase_16,EXD2->chr14:69658228-69709075:+,exonuclease_3'-5'_domain_containing_2	MFE280_ENDOMETRIUM	0.26	0.29	0.0806	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-CO1--MT-ND2	4	2	MT-CO1	1533	chrM:6436:+	MT-ND2	5968	chrM:4895:+	INCL_NON_REF_SPLICE	NO	18787	11202	0	0	0.0537	0.0269	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MFE280_ENDOMETRIUM	0	0	0.0806	FALSE	55	19	1	13	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	4	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13985	4	0	0.6	0.0537	0.0269	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.6	0.0806	FALSE	231	205	14	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	3	6	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	14463	1	0	0.9	0.0403	0.0806	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.9	0.1209	FALSE	231	217	16	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	3	6	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	12896	170	0	0.05	0.0403	0.0806	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.05	0.1209	FALSE	231	217	16	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	AC027763.2--DLG4	4	1	AC027763.2	1154	chr17:6915515:-	DLG4	23700	chr17:7100371:-	ONLY_REF_SPLICE	YES	31	45	0.14	0.1	0.0537	0.0134	AC027763.2->chr17:6779954-6915668:-,DLG4->chr17:7093209-7123021:-,discs_large_homolog_4	MFE280_ENDOMETRIUM	0.1	0.14	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	GATS--PILRB	4	1	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	64	195	0.07	0.03	0.0537	0.0134	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	MFE280_ENDOMETRIUM	0.03	0.07	0.0671	TRUE	57	41	2	35	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	3	5	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	13737	748	0	0.01	0.0403	0.0671	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.01	0.1074	FALSE	231	217	16	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	4	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	NO	12099	65	0	0.07	0.0537	0.0134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.07	0.0671	FALSE	231	204	14	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	3	5	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	13695	415	0	0.02	0.0403	0.0671	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.02	0.1074	FALSE	231	217	16	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-RNR2	4	1	MT-ND4	1201	chrM:10960:+	MT-RNR2	5407	chrM:1699:+	INCL_NON_REF_SPLICE	YES	11759	0	0	1	0.0537	0.0134	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MFE280_ENDOMETRIUM	0	1	0.0671	FALSE	13	19	3	21	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	PTPN13--MEPE	4	1	PTPN13	9224	chr4:87614827:+	MEPE	55690	chr4:88755855:+	ONLY_REF_SPLICE	YES	90	0	0.05	1	0.0537	0.0134	PTPN13->Oncogene{Bushman},chr4:87515468-87736324:+,protein_tyrosine_phosphatase,_non-receptor_type_13,MEPE->chr4:88742563-88767969:+,matrix_extracellular_phosphoglycoprotein	MFE280_ENDOMETRIUM	0.05	1	0.0671	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	3	4	MT-ND4	1452	chrM:11211:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17089	4	0	0.64	0.0403	0.0537	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.64	0.094	FALSE	231	217	16	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	3	4	MT-ND4	1521	chrM:11280:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	18163	506	0	0.01	0.0403	0.0537	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.01	0.094	FALSE	231	217	16	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	3	4	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	17193	1	0	0.88	0.0403	0.0537	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.88	0.094	FALSE	231	217	16	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	3	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	16835	1	0	0.88	0.0403	0.0537	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.88	0.094	FALSE	231	217	16	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	3	4	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	16758	1	0	0.88	0.0403	0.0537	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.88	0.094	FALSE	231	217	16	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	3	4	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	17185	1	0	0.88	0.0403	0.0537	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.88	0.094	FALSE	231	217	16	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MFE280_ENDOMETRIUM	1	1	0.0537	TRUE	0	0	0	434	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0537	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MFE280_ENDOMETRIUM	1	1	0.0537	TRUE	465	1949	224	605	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ATP6--MT-CO1	3	3	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	11433	18747	0	0	0.0403	0.0403	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MFE280_ENDOMETRIUM	0	0	0.0806	FALSE	183	104	9	328	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	AFF1--PTPN13	3	2	AFF1	3385	chr4:87869723:+	PTPN13	45951	chr4:87637683:+	ONLY_REF_SPLICE	YES	16	96	0.24	0.05	0.0403	0.0269	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BLCA:2|LUAD:1|LUSC:1],AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,PTPN13->Oncogene{Bushman},chr4:87515468-87736324:+,protein_tyrosine_phosphatase,_non-receptor_type_13	MFE280_ENDOMETRIUM	0.05	0.24	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	APP--MT-ND2	3	2	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	1476	4550	0	0	0.0403	0.0269	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MFE280_ENDOMETRIUM	0	0	0.0672	FALSE	0	1	0	51	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	HIF1A--RP11-47I22.3	3	2	HIF1A	15201	chr14:62207906:+	RP11-47I22.3	28952	chr14:62124323:+	ONLY_REF_SPLICE	YES	221	0	0.02	1	0.0403	0.0269	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	MFE280_ENDOMETRIUM	0.02	1	0.0672	TRUE	0	0	0	2	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	3	2	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	13979	1009	0	0	0.0403	0.0269	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0	0.0672	FALSE	231	205	14	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND6--MT-TE	3	2	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0403	0.0269	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MFE280_ENDOMETRIUM	0.62	1	0.0672	FALSE	499	1288	110	792	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	RP11-123O10.4--GRIP1	3	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0403	0.0269	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MFE280_ENDOMETRIUM	1	1	0.0672	FALSE	93	270	15	244	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	SMG1--CTA-363E6.2	3	2	SMG1	1505	chr16:18937272:-	CTA-363E6.2	74526	chr16:19379199:-	ONLY_REF_SPLICE	YES	13	0	0.28	1	0.0403	0.0269	SMG1->SMG1_phosphatidylinositol_3-kinase-related_kinase,chr16:18816175-18937776:-,CTA-363E6.2->chr16:19354969-19413015:-	MFE280_ENDOMETRIUM	0.28	1	0.0672	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	BLMH--MYO15B	3	1	BLMH	11462	chr17:28593903:-	MYO15B	35518	chr17:73608879:+	ONLY_REF_SPLICE	YES	142	13	0.03	0.24	0.0403	0.0134	BLMH->bleomycin_hydrolase,chr17:28575218-28619074:-,MYO15B->chr17:73584139-73622929:+,myosin_XVB	MFE280_ENDOMETRIUM	0.03	0.24	0.0537	TRUE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	BMPR1B--KCNU1	3	1	BMPR1B	2171	chr4:95797051:+	KCNU1	43278	chr8:36763226:+	ONLY_REF_SPLICE	YES	1	13	0.8	0.24	0.0403	0.0134	BMPR1B->bone_morphogenetic_protein_receptor_type_1B,chr4:95679119-96079599:+,KCNU1->chr8:36641842-36793646:+,potassium_calcium-activated_channel_subfamily_U_member_1	MFE280_ENDOMETRIUM	0.24	0.8	0.0537	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	BRD1--DENND6B	3	1	BRD1	13523	chr22:50181038:-	DENND6B	23396	chr22:50757432:-	ONLY_REF_SPLICE	YES	33	9	0.11	0.31	0.0403	0.0134	BRD1->bromodomain_containing_1,chr22:50166931-50221160:-,DENND6B->DENN_domain_containing_6B,chr22:50747459-50765489:-	MFE280_ENDOMETRIUM	0.11	0.31	0.0537	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	MT-CO1--MT-ND2	3	1	MT-CO1	1642	chrM:6545:+	MT-ND2	6410	chrM:5337:+	INCL_NON_REF_SPLICE	YES	20745	471	0	0.01	0.0403	0.0134	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MFE280_ENDOMETRIUM	0	0.01	0.0537	FALSE	55	19	1	13	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-CO1--MT-ND2	3	1	MT-CO1	1653	chrM:6556:+	MT-ND2	6382	chrM:5309:+	INCL_NON_REF_SPLICE	YES	21416	752	0	0.01	0.0403	0.0134	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MFE280_ENDOMETRIUM	0	0.01	0.0537	FALSE	55	19	1	13	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-CO1--MT-ND2	3	1	MT-CO1	1578	chrM:6481:+	MT-ND2	6223	chrM:5150:+	INCL_NON_REF_SPLICE	YES	18106	3524	0	0	0.0403	0.0134	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MFE280_ENDOMETRIUM	0	0	0.0537	FALSE	55	19	1	13	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	3	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	14054	1794	0	0	0.0403	0.0134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0	0.0537	FALSE	231	217	16	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	3	1	MT-ND4	1200	chrM:10959:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	11570	1	0	0.8	0.0403	0.0134	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	0	0.8	0.0537	FALSE	230	193	14	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-RNR2	3	1	MT-ND4	1212	chrM:10971:+	MT-RNR2	5959	chrM:2251:+	INCL_NON_REF_SPLICE	NO	12029	6579	0	0	0.0403	0.0134	LOCAL_REARRANGEMENT:+:[7531],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MFE280_ENDOMETRIUM	0	0	0.0537	FALSE	13	19	3	21	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	SLC22A17--MYH7	2	5	SLC22A17	4485	chr14:23818481:-	MYH7	12060	chr14:23902949:-	ONLY_REF_SPLICE	YES	28	0	0.2	1	0.0269	0.0671	LOCAL_REARRANGEMENT:-:[59826],SLC22A17->chr14:23815515-23822121:-,solute_carrier_family_22_member_17,MYH7->chr14:23881947-23904927:-,myosin,_heavy_chain_7,_cardiac_muscle,_beta	MFE280_ENDOMETRIUM	0.2	1	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	DDA1--MYO9B	3	0	DDA1	5254	chr19:17430534:+	MYO9B	47076	chr19:17320395:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:+:[94981],DDA1->DET1_and_DDB1_associated_1,chr19:17420327-17434110:+,MYO9B->chr19:17186591-17325346:+,myosin_IXB	MFE280_ENDOMETRIUM	1	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	FBXO11--MT-CO3	3	0	FBXO11	1078	chr2:48132855:-	MT-CO3	28456	chrM:9290:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	FBXO11->F-box_protein_11,chr2:48016455-48132932:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	MFE280_ENDOMETRIUM	1	1	0.0403	FALSE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-CO1--MT-ND2	3	0	MT-CO1	1316	chrM:6219:+	MT-ND2	6410	chrM:5337:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	MFE280_ENDOMETRIUM	1	1	0.0403	FALSE	55	19	1	13	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	MT-ND4--MT-ATP8	3	0	MT-ND4	1110	chrM:10869:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MFE280_ENDOMETRIUM	1	1	0.0403	FALSE	230	193	14	283	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	PLEKHG1--MTHFD1L	1	8	PLEKHG1	3260	chr6:150971922:+	MTHFD1L	37645	chr6:151233804:+	ONLY_REF_SPLICE	YES	0	65	1	0.12	0.0134	0.1074	NEIGHBORS[21886],PLEKHG1->chr6:150920999-151164799:+,pleckstrin_homology_and_RhoGEF_domain_containing_G1,MTHFD1L->chr6:151186685-151423023:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_1-like	MFE280_ENDOMETRIUM	0.12	1	0.1208	FALSE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	BLMH--MYO15B	2	2	BLMH	11462	chr17:28593903:-	MYO15B	34606	chr17:73607967:+	ONLY_REF_SPLICE	YES	142	18	0.03	0.18	0.0269	0.0269	BLMH->bleomycin_hydrolase,chr17:28575218-28619074:-,MYO15B->chr17:73584139-73622929:+,myosin_XVB	MFE280_ENDOMETRIUM	0.03	0.18	0.0538	TRUE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	CDC42--CELA3A	2	2	CDC42	4088	chr1:22405076:+	CELA3A	17964	chr1:22333866:+	ONLY_REF_SPLICE	YES	503	10	0.01	0.29	0.0269	0.0269	LOCAL_REARRANGEMENT:+:[40088],CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,CELA3A->chr1:22328149-22339032:+,chymotrypsin_like_elastase_family_member_3A	MFE280_ENDOMETRIUM	0.01	0.29	0.0538	FALSE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	HIF1A--RP11-47I22.3	2	1	HIF1A	11809	chr14:62203827:+	RP11-47I22.3	25003	chr14:62117680:+	ONLY_REF_SPLICE	YES	157	0	0.02	1	0.0269	0.0134	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_REARRANGEMENT:+:[36817],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,RP11-47I22.3->chr14:62037258-62125414:+	MFE280_ENDOMETRIUM	0.02	1	0.0403	TRUE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	RP11-120D5.1--MID1	2	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	10	0.3	0.23	0.0269	0.0134	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MFE280_ENDOMETRIUM	0.23	0.3	0.0403	FALSE	0	48	1	163	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	SMARCC1--NCKIPSD	2	1	SMARCC1	30620	chr3:47651556:-	NCKIPSD	47953	chr3:48701567:-	ONLY_REF_SPLICE	YES	96	0	0.03	1	0.0269	0.0134	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,NCKIPSD->NCK_interacting_protein_with_SH3_domain,Oncogene{Bushman},chr3:48701364-48723797:-	MFE280_ENDOMETRIUM	0.03	1	0.0403	TRUE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	SMG1--CTA-363E6.2	1	5	SMG1	1776	chr16:18937001:-	CTA-363E6.2	72086	chr16:19407571:-	ONLY_REF_SPLICE	YES	15	0	0.29	1	0.0134	0.0671	SMG1->SMG1_phosphatidylinositol_3-kinase-related_kinase,chr16:18816175-18937776:-,CTA-363E6.2->chr16:19354969-19413015:-	MFE280_ENDOMETRIUM	0.29	1	0.0805	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ADH5--SEC31A	2	0	ADH5	10079	chr4:99993724:-	SEC31A	47563	chr4:83750211:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	ADH5->alcohol_dehydrogenase_5_(class_III),_chi_polypeptide,chr4:99992132-100009952:-,SEC31A->SEC31_homolog_A,_COPII_coat_complex_component,chr4:83739814-83822319:-	MFE280_ENDOMETRIUM	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	DDX5--SMURF2	2	0	DDX5	8651	chr17:62496667:-	SMURF2	24668	chr17:62568074:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:-:[34096],DDX5->DEAD-box_helicase_5,Oncogene{Bushman},chr17:62495734-62504317:-,SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-	MFE280_ENDOMETRIUM	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ESCO1--AC068542.1	2	0	ESCO1	1262	chr18:19180584:-	AC068542.1	23321	chr2:115586449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	ESCO1->chr18:19109242-19180845:-,establishment_of_sister_chromatid_cohesion_N-acetyltransferase_1,AC068542.1->chr2:115586009-115591125:-	MFE280_ENDOMETRIUM	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	EXD3--RABL6	2	0	EXD3	1149	chr9:140317566:-	RABL6	36936	chr9:139717977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3,RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+	MFE280_ENDOMETRIUM	1	1	0.0269	TRUE	1	0	0	3	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	NHEJ1--ATG9A	2	0	NHEJ1	6332	chr2:220011402:-	ATG9A	20204	chr2:220090294:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:-:[48907],NHEJ1->chr2:219940039-220025587:-,non-homologous_end_joining_factor_1,ATG9A->autophagy_related_9A,chr2:220074494-220094439:-	MFE280_ENDOMETRIUM	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PDDC1--CHID1	2	0	PDDC1	2886	chr11:775066:-	CHID1	30552	chr11:870499:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:-:[89869],PDDC1->Parkinson_disease_7_domain_containing_1,chr11:767220-777488:-,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	MFE280_ENDOMETRIUM	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PKIB--RP11-532N4.2	2	0	PKIB	8843	chr6:122954512:+	RP11-532N4.2	23455	chr6:123755081:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	PKIB->chr6:122793076-123047518:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_beta,RP11-532N4.2->chr6:123732857-123792904:+	MFE280_ENDOMETRIUM	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SNX29--RP11-166B2.8	2	0	SNX29	4327	chr16:12096900:+	RP11-166B2.8	42704	chr16:11989346:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0269	0	LOCAL_REARRANGEMENT:+:[81126],SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,RP11-166B2.8->chr16:11945506-11989468:+	MFE280_ENDOMETRIUM	1	1	0.0269	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	AC027763.2--DLG4	1	3	AC027763.2	3633	chr17:6905803:-	DLG4	23700	chr17:7100371:-	ONLY_REF_SPLICE	YES	34	45	0.11	0.08	0.0134	0.0403	AC027763.2->chr17:6779954-6915668:-,DLG4->chr17:7093209-7123021:-,discs_large_homolog_4	MFE280_ENDOMETRIUM	0.08	0.11	0.0537	TRUE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	AFF1--PTPN13	1	2	AFF1	6061	chr4:87928576:+	PTPN13	45951	chr4:87637683:+	ONLY_REF_SPLICE	YES	33	96	0.08	0.03	0.0134	0.0269	GTEx&tcga_normals:1/3694=0.03%,YOSHIHARA_TCGA_num_samples[BLCA:2|LUAD:1|LUSC:1],AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,PTPN13->Oncogene{Bushman},chr4:87515468-87736324:+,protein_tyrosine_phosphatase,_non-receptor_type_13	MFE280_ENDOMETRIUM	0.03	0.08	0.0403	TRUE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	BLMH--MYO15B	1	2	BLMH	11462	chr17:28593903:-	MYO15B	32886	chr17:73606247:+	ONLY_REF_SPLICE	YES	142	12	0.02	0.2	0.0134	0.0269	BLMH->bleomycin_hydrolase,chr17:28575218-28619074:-,MYO15B->chr17:73584139-73622929:+,myosin_XVB	MFE280_ENDOMETRIUM	0.02	0.2	0.0403	TRUE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0134	0.0269	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MFE280_ENDOMETRIUM	1	1	0.0403	FALSE	192	492	57	212	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	RP13-188A5.1--KLF8	1	2	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	0	2	1	0.6	0.0134	0.0269	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	MFE280_ENDOMETRIUM	0.6	1	0.0403	TRUE	10	78	6	20	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	SLX4--ADCY9	1	2	SLX4	3176	chr16:3658431:-	ADCY9	30444	chr16:4043511:-	ONLY_REF_SPLICE	NO	16	12	0.16	0.2	0.0134	0.0269	SLX4->SLX4_structure-specific_endonuclease_subunit,chr16:3631182-3661599:-,ADCY9->adenylate_cyclase_9,chr16:4003388-4166186:-	MFE280_ENDOMETRIUM	0.16	0.2	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SMG1--CTA-363E6.2	1	2	SMG1	1505	chr16:18937272:-	CTA-363E6.2	75593	chr16:19366123:-	ONLY_REF_SPLICE	YES	13	0	0.19	1	0.0134	0.0269	SMG1->SMG1_phosphatidylinositol_3-kinase-related_kinase,chr16:18816175-18937776:-,CTA-363E6.2->chr16:19354969-19413015:-	MFE280_ENDOMETRIUM	0.19	1	0.0403	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	TAF9--RP11-241G9.3	1	2	TAF9	4494	chr5:68662330:-	RP11-241G9.3	15053	chr5:68773502:-	ONLY_REF_SPLICE	NO	576	0	0.01	1	0.0134	0.0269	TAF9->TATA-box_binding_protein_associated_factor_9,chr5:68646811-68665840:-,RP11-241G9.3->chr5:68773299-68798293:-	MFE280_ENDOMETRIUM	0.01	1	0.0403	FALSE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	AC074286.1--PDE11A	1	1	AC074286.1	1119	chr2:178257301:-	PDE11A	40951	chr2:178592900:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0134	0.0134	AC074286.1->chr2:178148236-178257419:-,PDE11A->Oncogene{Bushman},chr2:178487980-178973066:-,phosphodiesterase_11A	MFE280_ENDOMETRIUM	0.67	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	ATAD5--SEZ6	1	1	ATAD5	21895	chr17:29214390:+	SEZ6	30785	chr17:27309057:-	ONLY_REF_SPLICE	YES	6	0	0.25	1	0.0134	0.0134	ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+,SEZ6->chr17:27281919-27333458:-,seizure_related_6_homolog	MFE280_ENDOMETRIUM	0.25	1	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	CTDSP1--C9orf3	1	1	CTDSP1	5150	chr2:219267128:+	C9orf3	48479	chr9:97848964:+	ONLY_REF_SPLICE	YES	81	260	0.02	0.01	0.0134	0.0134	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:17=pct:4.6],Esophagus=[count:10=pct:2.5],Uterus=[count:6=pct:14.0],Nerve=[count:6=pct:3.5],Skin=[count:4=pct:1.3],Colon=[count:4=pct:2.1],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Salivary_Gland=[count:1=pct:2.6],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Brain=[count:1=pct:0.2]},GTEx_v2:{count=84;pct=0.97%;dist=Artery_-_Tibial=9,Nerve_-_Tibial=8,Esophagus_-_Muscularis=8,Artery_-_Aorta=7,Skin_-_Sun_Exposed_(Lower_leg)=6,Heart_-_Left_Ventricle=6,Artery_-_Coronary=5,Uterus=4,Esophagus_-_Gastroesophageal_Junction=4,Adipose_-_Subcutaneous=3,Vagina=2,Prostate=2,Esophagus_-_Mucosa=2,Adrenal_Gland=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Colon_-_Sigmoid=2,Colon_-_Transverse=2,Ovary=1,Pancreas=1,Brain_-_Hippocampus=1,Kidney_-_Cortex=1,Liver=1,Brain_-_Caudate_(basal_ganglia)=1,Adipose_-_Visceral_(Omentum)=1,Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1,Brain_-_Substantia_nigra=1},CTDSP1->CTD_small_phosphatase_1,chr2:219262979-219270664:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	MFE280_ENDOMETRIUM	0.01	0.02	0.0268	FALSE	58	57	6	3	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	FGF2--SPATA5	1	1	FGF2	1645	chr4:123748507:+	SPATA5	24754	chr4:123977542:+	ONLY_REF_SPLICE	YES	2	5	0.5	0.29	0.0134	0.0134	NEIGHBORS[24838],FGF2->Oncogene{Bushman},chr4:123747863-123819391:+,fibroblast_growth_factor_2,SPATA5->chr4:123844229-124240605:+,spermatogenesis_associated_5	MFE280_ENDOMETRIUM	0.29	0.5	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	FXR1--DNAJC19	1	1	FXR1	8722	chr3:180653019:+	DNAJC19	34312	chr3:180706017:-	ONLY_REF_SPLICE	YES	365	226	0.01	0.01	0.0134	0.0134	LOCAL_INVERSION:+:-:[956],FXR1->FMR1_autosomal_homolog_1,chr3:180585929-180700541:+,DNAJC19->DnaJ_heat_shock_protein_family_(Hsp40)_member_C19,chr3:180701497-180707562:-	MFE280_ENDOMETRIUM	0.01	0.01	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	GFPT1--NFU1	1	1	GFPT1	1186	chr2:69614197:-	NFU1	31383	chr2:69659137:-	ONLY_REF_SPLICE	YES	72	17	0.03	0.11	0.0134	0.0134	YOSHIHARA_TCGA_num_samples[KIRC:1|LUSC:1],LOCAL_REARRANGEMENT:-:[8500],GFPT1->chr2:69546905-69614382:-,glutamine--fructose-6-phosphate_transaminase_1,NFU1->NFU1_iron-sulfur_cluster_scaffold,chr2:69622882-69664760:-	MFE280_ENDOMETRIUM	0.03	0.11	0.0268	TRUE	0	1	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	GMEB1--RP11-442N24__B.1	1	1	GMEB1	2285	chr1:29010252:+	RP11-442N24__B.1	22049	chr1:28974705:+	ONLY_REF_SPLICE	NO	20	0	0.09	1	0.0134	0.0134	LOCAL_REARRANGEMENT:+:[20151],GMEB1->chr1:28995244-29045865:+,glucocorticoid_modulatory_element_binding_protein_1,RP11-442N24__B.1->chr1:28969740-28975093:+	MFE280_ENDOMETRIUM	0.09	1	0.0268	TRUE	0	1	0	2	1	TRUE	ACH-000192
MFE280_ENDOMETRIUM	PTPN13--MEPE	1	1	PTPN13	33912	chr4:87694111:+	MEPE	55690	chr4:88755855:+	ONLY_REF_SPLICE	YES	102	0	0.02	1	0.0134	0.0134	PTPN13->Oncogene{Bushman},chr4:87515468-87736324:+,protein_tyrosine_phosphatase,_non-receptor_type_13,MEPE->chr4:88742563-88767969:+,matrix_extracellular_phosphoglycoprotein	MFE280_ENDOMETRIUM	0.02	1	0.0268	TRUE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	7	7	0.22	0.22	0.0134	0.0134	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MFE280_ENDOMETRIUM	0.22	0.22	0.0268	FALSE	0	23	1	67	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	RP11-773D16.1--RAPGEF4	1	1	RP11-773D16.1	3411	chr10:81574369:-	RAPGEF4	13233	chr2:173659753:+	ONLY_REF_SPLICE	YES	45	1	0.04	0.67	0.0134	0.0134	RP11-773D16.1->chr10:81563813-81586350:-,RAPGEF4->Rap_guanine_nucleotide_exchange_factor_4,chr2:173600002-173917621:+	MFE280_ENDOMETRIUM	0.04	0.67	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000192
MFE280_ENDOMETRIUM	SMARCC1--CELSR3	1	1	SMARCC1	30620	chr3:47651556:-	CELSR3	45816	chr3:48692827:-	ONLY_REF_SPLICE	YES	96	25	0.02	0.07	0.0134	0.0134	SMARCC1->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_1,chr3:47626762-47823596:-,CELSR3->cadherin_EGF_LAG_seven-pass_G-type_receptor_3,chr3:48673902-48700348:-	MFE280_ENDOMETRIUM	0.02	0.07	0.0268	TRUE	0	0	0	1	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	SUMF2--CCT6A	1	1	SUMF2	3658	chr7:56140804:+	CCT6A	20326	chr7:56127962:+	ONLY_REF_SPLICE	NO	267	639	0.01	0	0.0134	0.0134	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[13],SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	MFE280_ENDOMETRIUM	0	0.01	0.0268	FALSE	0	5	0	5	0	FALSE	ACH-000192
MFE280_ENDOMETRIUM	TTLL5--YLPM1	1	1	TTLL5	6098	chr14:76135865:+	YLPM1	78612	chr14:75295916:+	ONLY_REF_SPLICE	YES	48	53	0.04	0.04	0.0134	0.0134	{Klijn_CCL:Cervix=1},TTLL5->chr14:76099968-76421421:+,tubulin_tyrosine_ligase_like_5,YLPM1->YLP_motif_containing_1,chr14:75230069-75322244:+	MFE280_ENDOMETRIUM	0.04	0.04	0.0268	TRUE	0	0	0	1	0	FALSE	ACH-000192
KMRC1_KIDNEY	MT-TA--MT-TN	107	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2959	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC1_KIDNEY	1	1	1.2959	FALSE	369	2501	205	193	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TC	81	11	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.981	0.1332	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMRC1_KIDNEY	1	1	1.1142	FALSE	462	80	0	856	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND6--MT-TE	74	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.8962	0.0484	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC1_KIDNEY	0.99	1	0.9446	FALSE	499	1288	110	792	0	FALSE	ACH-000684
KMRC1_KIDNEY	TIMM23B--LINC00843	65	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7872	0.1332	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMRC1_KIDNEY	1	1	0.9204	TRUE	508	994	45	981	0	FALSE	ACH-000684
KMRC1_KIDNEY	ZNF654--HMGB2	41	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4966	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KMRC1_KIDNEY	1	1	0.4966	TRUE	0	0	0	518	0	FALSE	ACH-000684
KMRC1_KIDNEY	TIMM23--RP11-464F9.1	39	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	644	1	0.06	0.98	0.4723	0.0121	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KMRC1_KIDNEY	0.06	0.98	0.4844	TRUE	519	3926	326	965	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TN	19	74	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2301	0.8962	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC1_KIDNEY	1	1	1.1263	FALSE	369	2501	205	193	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND6--MT-TE	29	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.3512	0.0606	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC1_KIDNEY	0.97	1	0.4118	FALSE	499	1288	110	792	0	FALSE	ACH-000684
KMRC1_KIDNEY	C15orf57--CBX3	25	20	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	72	9	0.38	0.83	0.3028	0.2422	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMRC1_KIDNEY	0.38	0.83	0.545	TRUE	267	562	48	632	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TN	17	52	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2059	0.6298	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC1_KIDNEY	1	1	0.8357	FALSE	369	2501	205	193	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TN	20	38	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2422	0.4602	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC1_KIDNEY	1	1	0.7024	FALSE	369	2501	205	193	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TN	25	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3028	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC1_KIDNEY	1	1	0.3028	FALSE	369	2501	205	193	0	FALSE	ACH-000684
KMRC1_KIDNEY	PLXDC1--TAF13	25	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3028	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	KMRC1_KIDNEY	1	1	0.3028	TRUE	7	10	0	216	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND6--MT-TE	11	49	MT-ND6	1194	chrM:14480:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.1332	0.5934	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC1_KIDNEY	0.95	1	0.7266	FALSE	499	1288	110	792	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TN	17	21	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2059	0.2543	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC1_KIDNEY	1	1	0.4602	FALSE	369	2501	205	193	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TN	14	26	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1696	0.3149	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC1_KIDNEY	1	1	0.4845	FALSE	369	2501	205	193	0	FALSE	ACH-000684
KMRC1_KIDNEY	RP11-96H19.1--RP11-446N19.1	19	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.96	0.92	0.2301	0.0606	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMRC1_KIDNEY	0.92	0.96	0.2907	FALSE	515	4851	409	746	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TC	16	9	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1938	0.109	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMRC1_KIDNEY	1	1	0.3028	FALSE	462	80	0	856	0	FALSE	ACH-000684
KMRC1_KIDNEY	C15orf57--CBX3	15	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	69	9	0.27	0.74	0.1817	0.1332	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMRC1_KIDNEY	0.27	0.74	0.3149	TRUE	267	562	48	632	0	FALSE	ACH-000684
KMRC1_KIDNEY	HSP90AB1--MT-RNR2	17	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2555	0	0.01	1	0.2059	0.0242	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC1_KIDNEY	0.01	1	0.2301	FALSE	13	9	0	364	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND6--MT-TE	11	26	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.1332	0.3149	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC1_KIDNEY	0.93	1	0.4481	FALSE	499	1288	110	792	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TN	17	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2059	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC1_KIDNEY	1	1	0.2059	FALSE	369	2501	205	193	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TC	16	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1938	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMRC1_KIDNEY	1	1	0.1938	FALSE	462	80	0	856	0	FALSE	ACH-000684
KMRC1_KIDNEY	NRIP1--AF127936.7	15	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1817	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMRC1_KIDNEY	1	1	0.1817	FALSE	292	1546	117	613	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND6--MT-TE	9	23	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.109	0.2786	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC1_KIDNEY	0.97	1	0.3876	FALSE	499	1288	110	792	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TN	5	36	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0.436	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC1_KIDNEY	1	1	0.4966	FALSE	369	2501	205	193	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND6--MT-TE	5	34	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.0606	0.4118	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC1_KIDNEY	0.93	1	0.4724	FALSE	499	1288	110	792	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND6--MT-TE	5	33	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.0606	0.3997	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC1_KIDNEY	0.93	1	0.4603	FALSE	499	1288	110	792	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND1--MT-RNR2	12	4	MT-ND1	1291	chrM:3597:+	MT-RNR2	5713	chrM:2427:+	INCL_NON_REF_SPLICE	YES	19	20597	0.46	0	0.1453	0.0484	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC1_KIDNEY	0	0.46	0.1937	FALSE	120	26	5	87	0	FALSE	ACH-000684
KMRC1_KIDNEY	HSP90AB1--MT-RNR2	12	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2577	0	0.01	1	0.1453	0.0242	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC1_KIDNEY	0.01	1	0.1695	FALSE	13	9	0	364	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND6--MT-TE	3	34	MT-ND6	1195	chrM:14479:-	MT-TE	4552	chrM:14716:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.0363	0.4118	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC1_KIDNEY	0.93	1	0.4481	FALSE	499	1288	110	792	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND6--MT-TE	11	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1332	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC1_KIDNEY	1	1	0.1332	FALSE	499	1288	110	792	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND6--MT-TE	4	26	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0.3149	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC1_KIDNEY	1	1	0.3633	FALSE	499	1288	110	792	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND6--MT-TE	3	26	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0363	0.3149	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC1_KIDNEY	0.91	1	0.3512	FALSE	499	1288	110	792	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TC	6	12	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0727	0.1453	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMRC1_KIDNEY	1	1	0.218	FALSE	462	80	0	856	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TN	8	1	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0969	0.0121	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC1_KIDNEY	1	1	0.109	FALSE	369	2501	205	193	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TN	8	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0969	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC1_KIDNEY	1	1	0.0969	FALSE	369	2501	205	193	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TC	5	11	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0.1332	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMRC1_KIDNEY	1	1	0.1938	FALSE	462	80	0	856	0	FALSE	ACH-000684
KMRC1_KIDNEY	RP11-96H19.1--RP11-446N19.1	6	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0727	0.0606	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KMRC1_KIDNEY	0.92	1	0.1333	FALSE	407	2205	196	549	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ATP6--MT-CO1	7	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0848	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC1_KIDNEY	1	1	0.0848	FALSE	183	104	9	328	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND5--MT-RNR2	4	12	MT-ND5	2718	chrM:14054:+	MT-RNR2	5841	chrM:1699:+	INCL_NON_REF_SPLICE	YES	7	0	0.7	1	0.0484	0.1453	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC1_KIDNEY	0.7	1	0.1937	FALSE	4	13	1	9	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND6--MT-TE	3	16	MT-ND6	1051	chrM:14623:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0363	0.1938	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC1_KIDNEY	0.95	1	0.2301	FALSE	499	1288	110	792	0	FALSE	ACH-000684
KMRC1_KIDNEY	TCERG1--RBM27	7	0	TCERG1	18530	chr5:145872601:+	RBM27	53095	chr5:145664185:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0848	0	{Klijn_CCL:Sarcomatoid=1},TCERG1->chr5:145826874-145891524:+,transcription_elongation_regulator_1,RBM27->RNA_binding_motif_protein_27,chr5:145583113-145718814:+	KMRC1_KIDNEY	1	1	0.0848	TRUE	0	0	0	1	0	TRUE	ACH-000684
KMRC1_KIDNEY	MT-ND6--MT-TE	4	10	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0.1211	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC1_KIDNEY	1	1	0.1695	FALSE	499	1288	110	792	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND5--MT-RNR2	4	9	MT-ND5	2813	chrM:14149:+	MT-RNR2	6390	chrM:2248:+	INCL_NON_REF_SPLICE	YES	0	21426	1	0	0.0484	0.109	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC1_KIDNEY	0	1	0.1574	FALSE	4	13	1	9	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND5--MT-RNR2	5	4	MT-ND5	1969	chrM:13305:+	MT-RNR2	5841	chrM:1699:+	INCL_NON_REF_SPLICE	YES	4160	0	0	1	0.0606	0.0484	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC1_KIDNEY	0	1	0.109	FALSE	4	14	1	9	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TC	3	12	MT-TA	1063	chrM:5593:-	MT-TC	4102	chrM:5794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0.1453	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMRC1_KIDNEY	1	1	0.1816	FALSE	462	80	0	856	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ATP6--MT-CO1	5	2	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4263	26388	0	0	0.0606	0.0242	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC1_KIDNEY	0	0	0.0848	FALSE	183	104	9	328	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TC	3	9	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0.109	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMRC1_KIDNEY	1	1	0.1453	FALSE	462	80	0	856	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND1--MT-RNR2	4	4	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	16	21523	0.33	0	0.0484	0.0484	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC1_KIDNEY	0	0.33	0.0968	FALSE	120	26	5	87	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0606	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC1_KIDNEY	1	1	0.0606	FALSE	499	1288	110	792	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND5--MT-RNR2	3	7	MT-ND5	2730	chrM:14066:+	MT-RNR2	6425	chrM:2283:+	INCL_NON_REF_SPLICE	YES	3	21788	0.77	0	0.0363	0.0848	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC1_KIDNEY	0	0.77	0.1211	FALSE	4	13	1	9	0	FALSE	ACH-000684
KMRC1_KIDNEY	ARPC2--CUX1	4	2	ARPC2	1451	chr2:219082267:+	CUX1	53966	chr7:101882600:+	ONLY_REF_SPLICE	YES	1391	36	0	0.14	0.0484	0.0242	ARPC2->actin_related_protein_2/3_complex_subunit_2,chr2:219081817-219119079:+,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	KMRC1_KIDNEY	0	0.14	0.0726	FALSE	0	0	0	1	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ATP6--MT-CO1	3	5	MT-ATP6	1426	chrM:8952:+	MT-CO1	5183	chrM:6405:+	INCL_NON_REF_SPLICE	YES	14466	22888	0	0	0.0363	0.0606	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC1_KIDNEY	0	0	0.0969	FALSE	183	104	9	328	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND1--MT-RNR2	3	5	MT-ND1	1685	chrM:3991:+	MT-RNR2	5522	chrM:2236:+	INCL_NON_REF_SPLICE	YES	636	21974	0.01	0	0.0363	0.0606	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC1_KIDNEY	0	0.01	0.0969	FALSE	120	26	5	87	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ATP6--MT-CO1	4	0	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC1_KIDNEY	1	1	0.0484	FALSE	183	104	9	328	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND1--MT-RNR2	3	4	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	17	0	0.29	1	0.0363	0.0484	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC1_KIDNEY	0.29	1	0.0847	FALSE	114	26	4	85	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND1--MT-RNR2	3	4	MT-ND1	1323	chrM:3629:+	MT-RNR2	5800	chrM:2514:+	INCL_NON_REF_SPLICE	NO	23	7946	0.23	0	0.0363	0.0484	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC1_KIDNEY	0	0.23	0.0847	FALSE	120	26	5	87	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND1--MT-RNR2	3	4	MT-ND1	1272	chrM:3578:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	YES	17	0	0.29	1	0.0363	0.0484	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC1_KIDNEY	0.29	1	0.0847	FALSE	114	26	4	85	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMRC1_KIDNEY	1	1	0.0484	FALSE	499	1288	110	792	0	FALSE	ACH-000684
KMRC1_KIDNEY	TMEM132A--MT-ND4L	4	0	TMEM132A	12311	chr11:60703820:+	MT-ND4L	16124	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0484	0	TMEM132A->chr11:60691935-60704631:+,transmembrane_protein_132A,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMRC1_KIDNEY	1	1	0.0484	FALSE	0	0	0	3	0	FALSE	ACH-000684
KMRC1_KIDNEY	NRIP1--AF127936.7	3	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0363	0.0121	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMRC1_KIDNEY	0.67	1	0.0484	FALSE	125	705	46	456	0	FALSE	ACH-000684
KMRC1_KIDNEY	CALM3--MT-ND4L	3	0	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KMRC1_KIDNEY	1	1	0.0363	FALSE	1	1	0	107	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KMRC1_KIDNEY	1	1	0.0363	FALSE	183	104	9	328	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-ND5--MT-RNR2	3	0	MT-ND5	1670	chrM:13006:+	MT-RNR2	6517	chrM:2375:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	LOCAL_REARRANGEMENT:+:[9108],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KMRC1_KIDNEY	1	1	0.0363	FALSE	3	14	1	8	0	FALSE	ACH-000684
KMRC1_KIDNEY	MT-TA--MT-TN	3	0	MT-TA	1059	chrM:5597:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KMRC1_KIDNEY	1	1	0.0363	FALSE	369	2501	205	193	0	FALSE	ACH-000684
KMRC1_KIDNEY	RP4-565E6.1--HYDIN	3	0	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	KMRC1_KIDNEY	1	1	0.0363	TRUE	456	1387	91	133	0	FALSE	ACH-000684
KMRC1_KIDNEY	SAR1A--KLHL7	2	0	SAR1A	1111	chr10:71930169:-	KLHL7	21797	chr7:23163396:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	SAR1A->chr10:71907045-71930279:-,secretion_associated_Ras_related_GTPase_1A,KLHL7->chr7:23145353-23217533:+,kelch_like_family_member_7	KMRC1_KIDNEY	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000684
KMRC1_KIDNEY	SEPT9--TPM1	2	0	SEPT9	4441	chr17:75284292:+	TPM1	52702	chr15:63349184:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	KMRC1_KIDNEY	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000684
KMRC1_KIDNEY	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0121	0.0242	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KMRC1_KIDNEY	1	1	0.0363	FALSE	164	806	69	479	0	FALSE	ACH-000684
KMRC1_KIDNEY	ATP5B--PSMD2	1	1	ATP5B	5770	chr12:57033764:-	PSMD2	13404	chr3:184019325:+	ONLY_REF_SPLICE	YES	2008	506	0	0	0.0121	0.0121	ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-,PSMD2->Oncogene{Bushman},chr3:184016497-184026842:+,proteasome_26S_subunit,_non-ATPase_2	KMRC1_KIDNEY	0	0	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000684
KMRC1_KIDNEY	BAZ2B--MARCH7	1	1	BAZ2B	1451	chr2:160472753:-	MARCH7	64626	chr2:160585520:+	ONLY_REF_SPLICE	NO	0	46	1	0.04	0.0121	0.0121	GTEx_v2:{count=4;pct=0.05%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1},LOCAL_INVERSION:-:+:[95797],BAZ2B->bromodomain_adjacent_to_zinc_finger_domain_2B,chr2:160175490-160473203:-,MARCH7->chr2:160569000-160627538:+,membrane_associated_ring-CH-type_finger_7	KMRC1_KIDNEY	0.04	1	0.0242	TRUE	1	1	0	4	1	TRUE	ACH-000684
KMRC1_KIDNEY	CYP20A1--SLC35F5	1	1	CYP20A1	1195	chr2:204103857:+	SLC35F5	22940	chr2:114501371:-	ONLY_REF_SPLICE	NO	26	69	0.07	0.03	0.0121	0.0121	CYP20A1->chr2:204103663-204163009:+,cytochrome_P450_family_20_subfamily_A_member_1,SLC35F5->chr2:114462588-114514400:-,solute_carrier_family_35_member_F5	KMRC1_KIDNEY	0.03	0.07	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000684
KMRC1_KIDNEY	DCTN6--MTA3	1	1	DCTN6	2175	chr8:30021691:+	MTA3	22996	chr2:42867313:+	ONLY_REF_SPLICE	NO	44	46	0.04	0.04	0.0121	0.0121	DCTN6->chr8:30013813-30041156:+,dynactin_subunit_6,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	KMRC1_KIDNEY	0.04	0.04	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000684
KMRC1_KIDNEY	LRRC8C--GALNT2	1	1	LRRC8C	2393	chr1:90152170:+	GALNT2	31740	chr1:230381809:+	ONLY_REF_SPLICE	YES	12	122	0.14	0.02	0.0121	0.0121	LRRC8C->chr1:90098631-90235462:+,leucine-rich_repeat_containing_8_family_member_C,GALNT2->chr1:230193536-230417870:+,polypeptide_N-acetylgalactosaminyltransferase_2	KMRC1_KIDNEY	0.02	0.14	0.0242	TRUE	0	0	0	1	0	FALSE	ACH-000684
J82_URINARY_TRACT	TIMM23B--LINC00843	64	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7714	0.2049	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	J82_URINARY_TRACT	0.99	1	0.9763	TRUE	508	994	45	981	0	FALSE	ACH-000396
J82_URINARY_TRACT	RP11-680G10.1--GSE1	61	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	15	1	0.82	0.7352	0.0723	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	J82_URINARY_TRACT	0.82	1	0.8075	TRUE	465	1949	224	605	0	FALSE	ACH-000396
J82_URINARY_TRACT	RP11-680G10.1--GSE1	42	12	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	6	1	0.9	0.5062	0.1446	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	J82_URINARY_TRACT	0.9	1	0.6508	TRUE	458	1351	185	561	0	FALSE	ACH-000396
J82_URINARY_TRACT	TIMM23--RP11-464F9.1	42	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	167	1	0.21	0.98	0.5062	0.0241	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	J82_URINARY_TRACT	0.21	0.98	0.5303	TRUE	519	3926	326	965	0	FALSE	ACH-000396
J82_URINARY_TRACT	ZNF654--HMGB2	41	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4942	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	J82_URINARY_TRACT	1	1	0.4942	TRUE	0	0	0	518	0	FALSE	ACH-000396
J82_URINARY_TRACT	RP11-123O10.4--GRIP1	39	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4701	0.0723	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	J82_URINARY_TRACT	1	1	0.5424	FALSE	416	2512	207	587	0	FALSE	ACH-000396
J82_URINARY_TRACT	CEP85--ZNF593	27	11	CEP85	8479	chr1:26586293:+	ZNF593	20921	chr1:26496909:+	ONLY_REF_SPLICE	YES	42	159	0.47	0.19	0.3254	0.1326	LOCAL_REARRANGEMENT:+:[62140],CEP85->centrosomal_protein_85,chr1:26560691-26605299:+,ZNF593->chr1:26496362-26498551:+,zinc_finger_protein_593	J82_URINARY_TRACT	0.19	0.47	0.458	TRUE	0	0	0	1	0	TRUE	ACH-000396
J82_URINARY_TRACT	KLF7--AC007879.5	19	8	KLF7	2801	chr2:208030191:-	AC007879.5	23383	chr2:208197419:-	ONLY_REF_SPLICE	YES	41	0	0.4	1	0.229	0.0964	LOCAL_REARRANGEMENT:-:[72597],KLF7->Kruppel-like_factor_7_(ubiquitous),chr2:207938861-208031991:-,AC007879.5->chr2:208104588-208394519:-	J82_URINARY_TRACT	0.4	1	0.3254	TRUE	0	0	0	1	0	TRUE	ACH-000396
J82_URINARY_TRACT	RP11-494M8.4--OVCH2	13	10	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	4	0	0.85	1	0.1567	0.1205	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	J82_URINARY_TRACT	0.85	1	0.2772	FALSE	32	0	0	22	0	FALSE	ACH-000396
J82_URINARY_TRACT	HAUS2--SNAP23	14	3	HAUS2	1156	chr15:42841163:+	SNAP23	26197	chr15:42821873:+	ONLY_REF_SPLICE	YES	44	137	0.28	0.11	0.1687	0.0362	LOCAL_REARRANGEMENT:+:[3461],HAUS2->HAUS_augmin_like_complex_subunit_2,chr15:42841008-42862192:+,SNAP23->chr15:42783431-42837547:+,synaptosome_associated_protein_23kDa	J82_URINARY_TRACT	0.11	0.28	0.2049	TRUE	0	0	0	1	0	TRUE	ACH-000396
J82_URINARY_TRACT	HSPBP1--GRK5	12	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1446	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	J82_URINARY_TRACT	1	1	0.1446	TRUE	1	39	0	134	39	FALSE	ACH-000396
J82_URINARY_TRACT	C15orf57--CBX3	9	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	46	25	0.3	0.44	0.1085	0.1326	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	J82_URINARY_TRACT	0.3	0.44	0.2411	TRUE	267	562	48	632	0	FALSE	ACH-000396
J82_URINARY_TRACT	C15orf57--CBX3	9	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	46	25	0.27	0.4	0.1085	0.0964	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	J82_URINARY_TRACT	0.27	0.4	0.2049	TRUE	267	562	48	632	0	FALSE	ACH-000396
J82_URINARY_TRACT	RP11-254I22.1--CTD-2337A12.1	11	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1326	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	J82_URINARY_TRACT	1	1	0.1326	TRUE	4	2	0	28	0	FALSE	ACH-000396
J82_URINARY_TRACT	MT-ATP6--MT-CO2	10	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	16	7	0.45	0.65	0.1205	0.0362	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	J82_URINARY_TRACT	0.45	0.65	0.1567	FALSE	59	21	0	114	0	FALSE	ACH-000396
J82_URINARY_TRACT	XXbac-BPG252P9.9--TUBBP2	9	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1085	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	J82_URINARY_TRACT	1	1	0.1085	TRUE	0	1	0	48	1	FALSE	ACH-000396
J82_URINARY_TRACT	MT-ATP6--MT-CO2	8	1	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	16	6	0.36	0.6	0.0964	0.0121	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	J82_URINARY_TRACT	0.36	0.6	0.1085	FALSE	59	21	0	114	0	FALSE	ACH-000396
J82_URINARY_TRACT	MT-TA--MT-TC	7	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0844	0.0241	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	J82_URINARY_TRACT	1	1	0.1085	FALSE	462	80	0	856	0	FALSE	ACH-000396
J82_URINARY_TRACT	RP11-254I22.1--CTD-2337A12.1	7	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	4	0	0.67	1	0.0844	0.0121	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	J82_URINARY_TRACT	0.67	1	0.0965	TRUE	6	15	3	35	0	FALSE	ACH-000396
J82_URINARY_TRACT	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0844	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	J82_URINARY_TRACT	1	1	0.0844	FALSE	292	1546	117	613	0	FALSE	ACH-000396
J82_URINARY_TRACT	RP11-494M8.4--OVCH2	4	10	RP11-494M8.4	10901	chr11:7775931:-	OVCH2	15008	chr11:7726221:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0482	0.1205	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	J82_URINARY_TRACT	1	1	0.1687	FALSE	16	1	1	11	0	FALSE	ACH-000396
J82_URINARY_TRACT	C15orf57--CBX3	4	8	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	46	25	0.21	0.32	0.0482	0.0964	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	J82_URINARY_TRACT	0.21	0.32	0.1446	TRUE	267	562	48	632	0	FALSE	ACH-000396
J82_URINARY_TRACT	XXbac-BPG252P9.9--TUBBP2	6	0	XXbac-BPG252P9.9	1003	chr6:30691652:-	TUBBP2	4896	chr13:41959197:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0723	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	J82_URINARY_TRACT	1	1	0.0723	TRUE	0	1	0	48	1	FALSE	ACH-000396
J82_URINARY_TRACT	NPM1P24--SET	5	2	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	32	1459	0.18	0	0.0603	0.0241	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	J82_URINARY_TRACT	0	0.18	0.0844	FALSE	0	0	0	434	0	FALSE	ACH-000396
J82_URINARY_TRACT	PRR16--CTD-2334D19.1	5	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	36	0	0.16	1	0.0603	0.0241	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	J82_URINARY_TRACT	0.16	1	0.0844	FALSE	56	216	12	147	0	FALSE	ACH-000396
J82_URINARY_TRACT	FTH1--ACTG1	5	1	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	4469	0	0	1	0.0603	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	J82_URINARY_TRACT	0	1	0.0724	FALSE	0	0	0	64	0	FALSE	ACH-000396
J82_URINARY_TRACT	MT-TA--MT-TC	5	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0603	0.0121	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	J82_URINARY_TRACT	1	1	0.0724	FALSE	462	80	0	856	0	FALSE	ACH-000396
J82_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	5	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0603	0.0121	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	J82_URINARY_TRACT	1	1	0.0724	FALSE	515	4851	409	746	0	FALSE	ACH-000396
J82_URINARY_TRACT	MT-ATP6--MT-CO2	4	3	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	18	6	0.28	0.54	0.0482	0.0362	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	J82_URINARY_TRACT	0.28	0.54	0.0844	FALSE	59	21	0	114	0	FALSE	ACH-000396
J82_URINARY_TRACT	NPM1P24--SET	4	2	NPM1P24	1533	chr10:74677760:-	SET	12307	chr9:131456202:+	INCL_NON_REF_SPLICE	NO	32	1467	0.16	0	0.0482	0.0241	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	J82_URINARY_TRACT	0	0.16	0.0723	FALSE	0	0	0	434	0	FALSE	ACH-000396
J82_URINARY_TRACT	XXbac-BPG252P9.9--TUBBP2	4	2	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	NO	4663	0	0	1	0.0482	0.0241	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	J82_URINARY_TRACT	0	1	0.0723	FALSE	0	1	0	48	1	FALSE	ACH-000396
J82_URINARY_TRACT	HSPA1B--UBB	4	0	HSPA1B	3019	chr6:31797530:+	UBB	7625	chr17:16285216:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0482	0	GTEx&tcga_normals:7/3694=0.19%,GTEx:0.14%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Blood=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Whole_Blood=1},HSPA1B->chr6:31795512-31798031:+,heat_shock_protein_family_A_(Hsp70)_member_1B,UBB->chr17:16284112-16286059:+,ubiquitin_B	J82_URINARY_TRACT	1	1	0.0482	TRUE	4	0	0	2	0	FALSE	ACH-000396
J82_URINARY_TRACT	KLF7--AC007879.5	2	8	KLF7	2801	chr2:208030191:-	AC007879.5	22239	chr2:208282468:-	ONLY_REF_SPLICE	YES	41	0	0.2	1	0.0241	0.0964	LOCAL_REARRANGEMENT:-:[72597],KLF7->Kruppel-like_factor_7_(ubiquitous),chr2:207938861-208031991:-,AC007879.5->chr2:208104588-208394519:-	J82_URINARY_TRACT	0.2	1	0.1205	TRUE	0	0	0	1	0	TRUE	ACH-000396
J82_URINARY_TRACT	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0482	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	J82_URINARY_TRACT	1	1	0.0482	FALSE	183	104	9	328	0	FALSE	ACH-000396
J82_URINARY_TRACT	POLE--ANKLE2	4	0	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0482	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	J82_URINARY_TRACT	1	1	0.0482	TRUE	0	0	0	11	0	TRUE	ACH-000396
J82_URINARY_TRACT	PRR16--CTD-2334D19.1	3	4	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	18	0	0.28	1	0.0362	0.0482	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	J82_URINARY_TRACT	0.28	1	0.0844	FALSE	21	45	1	60	0	FALSE	ACH-000396
J82_URINARY_TRACT	RP11-141M1.3--STARD13	4	0	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0482	0	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	J82_URINARY_TRACT	1	1	0.0482	FALSE	141	264	50	91	0	FALSE	ACH-000396
J82_URINARY_TRACT	RP11-254I22.1--CTD-2337A12.1	4	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0482	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	J82_URINARY_TRACT	1	1	0.0482	TRUE	0	2	1	13	0	FALSE	ACH-000396
J82_URINARY_TRACT	MYH9--MT2A	3	3	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	975	0	0.01	1	0.0362	0.0362	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	J82_URINARY_TRACT	0.01	1	0.0724	FALSE	0	0	0	24	0	FALSE	ACH-000396
J82_URINARY_TRACT	FTH1--ACTG1	3	1	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	NO	4532	0	0	1	0.0362	0.0121	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	J82_URINARY_TRACT	0	1	0.0483	FALSE	0	0	0	64	0	FALSE	ACH-000396
J82_URINARY_TRACT	MT-ATP6--MT-CO2	3	1	MT-ATP6	1129	chrM:8655:+	MT-CO2	4839	chrM:7743:+	INCL_NON_REF_SPLICE	YES	14	7	0.22	0.36	0.0362	0.0121	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	J82_URINARY_TRACT	0.22	0.36	0.0483	FALSE	59	21	0	114	0	FALSE	ACH-000396
J82_URINARY_TRACT	MT-ATP6--MT-CO2	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	8	6	0.33	0.4	0.0362	0.0121	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	J82_URINARY_TRACT	0.33	0.4	0.0483	FALSE	59	21	0	114	0	FALSE	ACH-000396
J82_URINARY_TRACT	MT-ATP6--MT-CO2	3	1	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	9	6	0.31	0.4	0.0362	0.0121	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	J82_URINARY_TRACT	0.31	0.4	0.0483	FALSE	59	21	0	114	0	FALSE	ACH-000396
J82_URINARY_TRACT	MT-ATP6--MT-CO2	3	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	10	6	0.29	0.4	0.0362	0.0121	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	J82_URINARY_TRACT	0.29	0.4	0.0483	FALSE	59	21	0	114	0	FALSE	ACH-000396
J82_URINARY_TRACT	HSPBP1--GRK5	3	0	HSPBP1	1858	chr19:55790892:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	J82_URINARY_TRACT	1	1	0.0362	TRUE	1	39	0	134	39	FALSE	ACH-000396
J82_URINARY_TRACT	MT-ATP6--MT-CO1	3	0	MT-ATP6	1150	chrM:8676:+	MT-CO1	5195	chrM:6417:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	J82_URINARY_TRACT	1	1	0.0362	FALSE	183	104	9	328	0	FALSE	ACH-000396
J82_URINARY_TRACT	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	J82_URINARY_TRACT	1	1	0.0362	TRUE	0	0	0	434	0	FALSE	ACH-000396
J82_URINARY_TRACT	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1083	chr6:30691572:-	TUBBP2	4900	chr13:41959193:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	J82_URINARY_TRACT	1	1	0.0362	TRUE	0	1	0	48	1	FALSE	ACH-000396
J82_URINARY_TRACT	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1179	chr6:30691476:-	TUBBP2	4914	chr13:41959179:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	J82_URINARY_TRACT	1	1	0.0362	TRUE	0	1	0	48	1	FALSE	ACH-000396
J82_URINARY_TRACT	RP11-123O10.4--GRIP1	1	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0121	0.0723	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	J82_URINARY_TRACT	1	1	0.0844	FALSE	9	21	5	22	0	FALSE	ACH-000396
J82_URINARY_TRACT	CTD-2337A12.1--CAST	2	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	29	1	0.09	0.0241	0.0121	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	J82_URINARY_TRACT	0.09	1	0.0362	TRUE	347	1186	183	220	0	FALSE	ACH-000396
J82_URINARY_TRACT	MB21D2--FGF12	2	1	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	42	35	0.07	0.08	0.0241	0.0121	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	J82_URINARY_TRACT	0.07	0.08	0.0362	FALSE	0	17	0	46	0	FALSE	ACH-000396
J82_URINARY_TRACT	RP11-494M8.4--OVCH2	2	1	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	8	0	0.27	1	0.0241	0.0121	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	J82_URINARY_TRACT	0.27	1	0.0362	FALSE	60	13	8	23	0	FALSE	ACH-000396
J82_URINARY_TRACT	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0241	0.0121	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	J82_URINARY_TRACT	1	1	0.0362	FALSE	407	2205	196	549	0	FALSE	ACH-000396
J82_URINARY_TRACT	RP11-123O10.4--GRIP1	1	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	2	1	0.71	0.0121	0.0482	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	J82_URINARY_TRACT	0.71	1	0.0603	FALSE	93	270	15	244	0	FALSE	ACH-000396
J82_URINARY_TRACT	RP11-254I22.1--RP11-254I22.2	2	0	RP11-254I22.1	1087	chr5:95385905:+	RP11-254I22.2	7947	chr5:95614292:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	NEIGHBORS[32257],RP11-254I22.1->chr5:95385819-95551223:+,RP11-254I22.2->chr5:95583480-95614455:+	J82_URINARY_TRACT	1	1	0.0241	FALSE	0	0	0	1	0	FALSE	ACH-000396
J82_URINARY_TRACT	TMSB10--TMSB4X	2	0	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	J82_URINARY_TRACT	1	1	0.0241	TRUE	0	1	0	17	1	TRUE	ACH-000396
J82_URINARY_TRACT	ZMYND8--GNAS	2	0	ZMYND8	6534	chr20:45976600:-	GNAS	53879	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	ZMYND8->Oncogene{Bushman},chr20:45837859-45985567:-,zinc_finger_MYND-type_containing_8,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	J82_URINARY_TRACT	1	1	0.0241	TRUE	0	0	0	2	0	TRUE	ACH-000396
J82_URINARY_TRACT	PRR16--CTD-2334D19.1	1	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	36	0	0.1	1	0.0121	0.0362	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	J82_URINARY_TRACT	0.1	1	0.0483	FALSE	1	13	0	24	0	FALSE	ACH-000396
J82_URINARY_TRACT	ZNF738--CHMP1A	1	3	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	NO	139	285	0.03	0.01	0.0121	0.0362	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	J82_URINARY_TRACT	0.01	0.03	0.0483	FALSE	1	20	1	28	3	FALSE	ACH-000396
J82_URINARY_TRACT	KRT7--FTH1	1	1	KRT7	8206	chr12:52636921:+	FTH1	19114	chr11:61732987:-	ONLY_REF_SPLICE	NO	7829	7705	0	0	0.0121	0.0121	KRT7->chr12:52626304-52645970:+,keratin_7,FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1	J82_URINARY_TRACT	0	0	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000396
J82_URINARY_TRACT	MB21D2--FGF12	1	1	MB21D2	1532	chr3:192635419:-	FGF12	9706	chr3:192445112:-	ONLY_REF_SPLICE	YES	42	0	0.05	1	0.0121	0.0121	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	J82_URINARY_TRACT	0.05	1	0.0242	FALSE	0	0	0	2	0	FALSE	ACH-000396
J82_URINARY_TRACT	RNF144B--DEK	1	1	RNF144B	7058	chr6:18439975:+	DEK	20428	chr6:18258636:-	ONLY_REF_SPLICE	YES	32	1051	0.06	0	0.0121	0.0121	GTEx_v2:{count=3;pct=0.03%;dist=Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Colon_-_Sigmoid=1},RNF144B->chr6:18368779-18469105:+,ring_finger_protein_144B,DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-	J82_URINARY_TRACT	0	0.06	0.0242	FALSE	0	0	0	2	0	FALSE	ACH-000396
J82_URINARY_TRACT	RP11-254I22.1--CTD-2337A12.1	1	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	7741	chr5:95644428:+	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0121	0.0121	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	J82_URINARY_TRACT	0.33	1	0.0242	TRUE	1	1	0	7	1	FALSE	ACH-000396
J82_URINARY_TRACT	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	27	1	0.07	0.0121	0.0121	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	J82_URINARY_TRACT	0.07	1	0.0242	TRUE	64	13	3	59	0	FALSE	ACH-000396
NCIH508_LARGE_INTESTINE	MT-TA--MT-TN	149	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6049	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH508_LARGE_INTESTINE	1	1	1.6049	FALSE	369	2501	205	193	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	TIMM23B--LINC00843	76	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.8186	0.3016	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH508_LARGE_INTESTINE	0.98	1	1.1202	TRUE	508	994	45	981	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TC	73	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7863	0.1077	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH508_LARGE_INTESTINE	1	1	0.894	FALSE	462	80	0	856	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	223	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	17	0	0.93	1	0.0754	2.402	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.93	1	2.4774	FALSE	344	826	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	226	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	29	0	0.89	1	0.0539	2.4343	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.89	1	2.4882	FALSE	344	826	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	227	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	32	0	0.88	1	0.0323	2.4451	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.88	1	2.4774	FALSE	344	827	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	220	MT-ND4	1110	chrM:10869:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	9	0	0.96	1	0.0431	2.3697	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.96	1	2.4128	FALSE	344	826	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	VTI1A--TCF7L2	55	16	VTI1A	5788	chr10:114220341:+	TCF7L2	30150	chr10:114900943:+	ONLY_REF_SPLICE	YES	22	24	0.76	0.75	0.5924	0.1723	Cosmic{samples=98,mutations=4,papers=1},GTEx&tcga_normals:1/3694=0.03%,VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,TCF7L2->Oncogene{Bushman},chr10:114710009-114927437:+,transcription_factor_7_like_2	NCIH508_LARGE_INTESTINE	0.75	0.76	0.7647	TRUE	0	0	0	1	0	TRUE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND6--MT-TE	54	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.5816	0.0539	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH508_LARGE_INTESTINE	0.97	1	0.6355	FALSE	499	1288	110	792	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TN	30	87	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3231	0.9371	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH508_LARGE_INTESTINE	1	1	1.2602	FALSE	369	2501	205	193	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	161	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	0	0.97	1	0.0754	1.7342	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.97	1	1.8096	FALSE	344	821	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TN	47	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5062	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH508_LARGE_INTESTINE	1	1	0.5062	FALSE	369	2501	205	193	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TN	11	133	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1185	1.4326	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH508_LARGE_INTESTINE	1	1	1.5511	FALSE	369	2501	205	193	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TN	31	42	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3339	0.4524	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH508_LARGE_INTESTINE	1	1	0.7863	FALSE	369	2501	205	193	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	145	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	10	0	0.94	1	0.0431	1.5618	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.94	1	1.6049	FALSE	344	826	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	TIMM23--RP11-464F9.1	40	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	128	4	0.24	0.91	0.4309	0.0108	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH508_LARGE_INTESTINE	0.24	0.91	0.4417	TRUE	519	3926	326	965	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	143	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	65	0	0.69	1	0.0323	1.5403	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.69	1	1.5726	FALSE	344	827	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	143	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	57	0	0.72	1	0.0323	1.5403	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.72	1	1.5726	FALSE	344	827	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TN	23	59	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2477	0.6355	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH508_LARGE_INTESTINE	1	1	0.8832	FALSE	369	2501	205	193	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	HEATR5A--RP11-966I7.2	33	11	HEATR5A	36123	chr14:31777099:-	RP11-966I7.2	50156	chr14:29253736:-	INCL_NON_REF_SPLICE	YES	50	1	0.47	0.98	0.3555	0.1185	HEATR5A->HEAT_repeat_containing_5A,chr14:31760994-31889788:-,RP11-966I7.2->chr14:29252697-29254993:-	NCIH508_LARGE_INTESTINE	0.47	0.98	0.474	TRUE	0	0	0	1	0	TRUE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	25	38	MT-ND4	1528	chrM:11287:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	823	0	0.07	1	0.2693	0.4093	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.07	1	0.6786	FALSE	344	827	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	34	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3662	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	1	1	0.3662	FALSE	230	193	14	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	110	MT-ND4	1175	chrM:10934:+	MT-ND4L	5626	chrM:10717:+	INCL_NON_REF_SPLICE	YES	26	0	0.81	1	0.0431	1.1848	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.81	1	1.2279	FALSE	344	826	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND6--MT-TE	27	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.2908	0.0539	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH508_LARGE_INTESTINE	0.94	1	0.3447	FALSE	499	1288	110	792	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND3--MT-ATP8	26	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2801	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	1	1	0.2801	FALSE	351	233	23	137	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TN	7	64	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0754	0.6894	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH508_LARGE_INTESTINE	1	1	0.7648	FALSE	369	2501	205	193	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TN	11	45	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1185	0.4847	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH508_LARGE_INTESTINE	1	1	0.6032	FALSE	369	2501	205	193	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND6--MT-TE	15	24	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.1616	0.2585	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH508_LARGE_INTESTINE	0.95	1	0.4201	FALSE	499	1288	110	792	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	8	51	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	12988	0	0	1	0.0862	0.5493	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0	1	0.6355	FALSE	328	800	43	304	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TC	17	8	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1831	0.0862	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH508_LARGE_INTESTINE	1	1	0.2693	FALSE	462	80	0	856	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TN	19	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2047	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH508_LARGE_INTESTINE	1	1	0.2047	FALSE	369	2501	205	193	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TN	6	51	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0.5493	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH508_LARGE_INTESTINE	1	1	0.6139	FALSE	369	2501	205	193	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-CO2--MT-CO1	16	2	MT-CO2	1129	chrM:7714:+	MT-CO1	5001	chrM:6220:+	INCL_NON_REF_SPLICE	YES	6	2203	0.75	0.01	0.1723	0.0215	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH508_LARGE_INTESTINE	0.01	0.75	0.1938	FALSE	36	10	0	27	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	50	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	26	0	0.68	1	0.0431	0.5386	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.68	1	0.5817	FALSE	344	826	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	16	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1723	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	1	1	0.1723	FALSE	230	198	14	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TN	16	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1723	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH508_LARGE_INTESTINE	1	1	0.1723	FALSE	369	2501	205	193	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	33	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	26	0	0.61	1	0.0754	0.3555	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.61	1	0.4309	FALSE	344	826	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-CO2--MT-CO1	12	10	MT-CO2	1282	chrM:7867:+	MT-CO1	5117	chrM:6336:+	INCL_NON_REF_SPLICE	YES	11	5966	0.67	0	0.1293	0.1077	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH508_LARGE_INTESTINE	0	0.67	0.237	FALSE	36	10	0	27	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TC	14	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1508	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH508_LARGE_INTESTINE	1	1	0.1508	FALSE	462	80	0	856	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	10	14	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2771	90	0.01	0.21	0.1077	0.1508	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0.01	0.21	0.2585	FALSE	216	209	16	281	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND6--MT-TE	9	18	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0969	0.1939	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH508_LARGE_INTESTINE	0.93	1	0.2908	FALSE	499	1288	110	792	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	37	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	30	0	0.58	1	0.0431	0.3985	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.58	1	0.4416	FALSE	344	826	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	11	8	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16774	12	0	0.61	0.1185	0.0862	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0	0.61	0.2047	FALSE	231	217	16	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND6--MT-TE	5	32	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0539	0.3447	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH508_LARGE_INTESTINE	0.95	1	0.3986	FALSE	499	1288	110	792	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TN	13	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.14	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH508_LARGE_INTESTINE	1	1	0.14	FALSE	369	2501	205	193	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	10	10	MT-ND4	1756	chrM:11515:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	16196	0	0	1	0.1077	0.1077	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0	1	0.2154	FALSE	231	217	16	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	37	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	21	0	0.66	1	0.0323	0.3985	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.66	1	0.4308	FALSE	344	826	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TY	12	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1293	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH508_LARGE_INTESTINE	1	1	0.1293	FALSE	13	214	14	42	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TC	9	11	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0969	0.1185	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH508_LARGE_INTESTINE	1	1	0.2154	FALSE	462	80	0	856	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	LTN1--APP	10	6	LTN1	33412	chr21:30302681:-	APP	49118	chr21:27394358:-	INCL_NON_REF_SPLICE	YES	17	491	0.48	0.03	0.1077	0.0646	LTN1->chr21:30300466-30365270:-,listerin_E3_ubiquitin_protein_ligase_1,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	NCIH508_LARGE_INTESTINE	0.03	0.48	0.1723	TRUE	0	0	0	1	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	8	9	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	16053	908	0	0.02	0.0862	0.0969	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0	0.02	0.1831	FALSE	231	217	16	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	C15orf57--CBX3	9	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	59	15	0.18	0.46	0.0969	0.0431	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH508_LARGE_INTESTINE	0.18	0.46	0.14	TRUE	267	562	48	632	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-CO2--MT-CO1	3	25	MT-CO2	1547	chrM:8132:+	MT-CO1	5229	chrM:6448:+	INCL_NON_REF_SPLICE	YES	3	13114	0.9	0	0.0323	0.2693	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH508_LARGE_INTESTINE	0	0.9	0.3016	FALSE	36	10	0	27	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND6--MT-TE	3	25	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	6	0	0.82	1	0.0323	0.2693	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH508_LARGE_INTESTINE	0.82	1	0.3016	FALSE	499	1288	110	792	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	9	0	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0969	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	1	1	0.0969	FALSE	230	193	14	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-CO2--MT-CO1	3	21	MT-CO2	1543	chrM:8128:+	MT-CO1	5333	chrM:6552:+	INCL_NON_REF_SPLICE	NO	3	25688	0.89	0	0.0323	0.2262	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH508_LARGE_INTESTINE	0	0.89	0.2585	FALSE	36	10	0	27	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	21	MT-ND4	2237	chrM:11996:+	MT-ATP8	5422	chrM:8409:+	INCL_NON_REF_SPLICE	YES	3908	0	0.01	1	0.0323	0.2262	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0.01	1	0.2585	FALSE	216	209	16	281	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	17	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	55	0	0.28	1	0.0431	0.1831	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.28	1	0.2262	FALSE	344	827	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	17	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	29	0	0.42	1	0.0431	0.1831	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.42	1	0.2262	FALSE	344	826	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	17	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	55	0	0.28	1	0.0431	0.1831	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.28	1	0.2262	FALSE	344	827	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TC	6	9	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0.0969	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH508_LARGE_INTESTINE	1	1	0.1615	FALSE	462	80	0	856	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TY	8	1	MT-TA	1056	chrM:5600:-	MT-TY	4026	chrM:5935:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0.0108	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH508_LARGE_INTESTINE	1	1	0.097	FALSE	13	214	14	42	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-CO2--MT-CO1	3	20	MT-CO2	1463	chrM:8048:+	MT-CO1	5176	chrM:6395:+	INCL_NON_REF_SPLICE	YES	16	9061	0.59	0	0.0323	0.2154	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH508_LARGE_INTESTINE	0	0.59	0.2477	FALSE	36	10	0	27	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-CO2--MT-CO1	3	20	MT-CO2	1492	chrM:8077:+	MT-CO1	5246	chrM:6465:+	INCL_NON_REF_SPLICE	YES	11	14084	0.68	0	0.0323	0.2154	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH508_LARGE_INTESTINE	0	0.68	0.2477	FALSE	36	10	0	27	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-CO2--MT-CO1	5	12	MT-CO2	1278	chrM:7863:+	MT-CO1	5001	chrM:6220:+	INCL_NON_REF_SPLICE	YES	12	2203	0.59	0.01	0.0539	0.1293	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH508_LARGE_INTESTINE	0.01	0.59	0.1832	FALSE	36	10	0	27	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	16	MT-ND4	1883	chrM:11642:+	MT-ATP8	5419	chrM:8406:+	INCL_NON_REF_SPLICE	YES	16793	0	0	1	0.0431	0.1723	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0	1	0.2154	FALSE	231	217	16	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND6--MT-TE	8	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH508_LARGE_INTESTINE	1	1	0.0862	FALSE	499	1288	110	792	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	PDE6B--PPP2R2D	8	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0862	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	NCIH508_LARGE_INTESTINE	1	1	0.0862	TRUE	7	65	3	22	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	15	MT-ND4	1982	chrM:11741:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	15609	0	0	1	0.0431	0.1616	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0	1	0.2047	FALSE	231	217	16	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	19	MT-ND4	2301	chrM:12060:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	6	0	0.79	1	0.0323	0.2047	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0.79	1	0.237	FALSE	209	205	15	279	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	VPS54--WDPCP	7	2	VPS54	8396	chr2:64192969:-	WDPCP	31873	chr2:63938725:-	ONLY_REF_SPLICE	YES	10	0	0.47	1	0.0754	0.0215	NEIGHBORS[64303],VPS54->VPS54,_GARP_complex_subunit,chr2:64119280-64246206:-,WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-	NCIH508_LARGE_INTESTINE	0.47	1	0.0969	FALSE	0	0	0	1	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	13	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5547	90	0	0.16	0.0431	0.14	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0	0.16	0.1831	FALSE	218	210	16	281	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	5	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0.0539	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	1	1	0.1185	FALSE	344	821	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	4	0	0.67	1	0.0754	0.0108	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.67	1	0.0862	FALSE	344	821	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	17	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	29	0	0.41	1	0.0323	0.1831	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	0.41	1	0.2154	FALSE	344	826	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND6--MT-TE	4	13	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0431	0.14	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH508_LARGE_INTESTINE	0.94	1	0.1831	FALSE	499	1288	110	792	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-CO2--MT-CO1	3	16	MT-CO2	1443	chrM:8028:+	MT-CO1	5365	chrM:6584:+	INCL_NON_REF_SPLICE	YES	19	26577	0.5	0	0.0323	0.1723	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH508_LARGE_INTESTINE	0	0.5	0.2046	FALSE	36	10	0	27	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	RP11-123O10.4--GRIP1	7	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0754	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH508_LARGE_INTESTINE	1	1	0.0754	FALSE	416	2512	207	587	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	10	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	16050	537	0	0.03	0.0431	0.1077	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0	0.03	0.1508	FALSE	231	217	16	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TC	4	10	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0.1077	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH508_LARGE_INTESTINE	1	1	0.1508	FALSE	462	80	0	856	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-CO2--MT-CO1	5	5	MT-CO2	1286	chrM:7871:+	MT-CO1	5166	chrM:6385:+	INCL_NON_REF_SPLICE	YES	11	8639	0.48	0	0.0539	0.0539	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH508_LARGE_INTESTINE	0	0.48	0.1078	FALSE	36	10	0	27	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-CO2--MT-CO1	3	13	MT-CO2	1345	chrM:7930:+	MT-CO1	5249	chrM:6468:+	INCL_NON_REF_SPLICE	YES	9	14324	0.64	0	0.0323	0.14	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH508_LARGE_INTESTINE	0	0.64	0.1723	FALSE	36	10	0	27	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND3--MT-ATP8	6	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	1	1	0.0646	FALSE	351	233	23	137	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	6	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	1	1	0.0646	FALSE	230	193	14	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH508_LARGE_INTESTINE	1	1	0.0646	FALSE	499	1288	110	792	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TY	6	0	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH508_LARGE_INTESTINE	1	1	0.0646	FALSE	13	214	14	42	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TY	6	0	MT-TA	1048	chrM:5608:-	MT-TY	4059	chrM:5902:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0646	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH508_LARGE_INTESTINE	1	1	0.0646	FALSE	13	214	14	42	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	C15orf57--CBX3	5	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	55	15	0.13	0.35	0.0539	0.0323	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH508_LARGE_INTESTINE	0.13	0.35	0.0862	TRUE	267	562	48	632	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-CO2--MT-CO1	5	3	MT-CO2	1227	chrM:7812:+	MT-CO1	5226	chrM:6445:+	INCL_NON_REF_SPLICE	YES	11	12878	0.42	0	0.0539	0.0323	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH508_LARGE_INTESTINE	0	0.42	0.0862	FALSE	36	10	0	27	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-CO2--MT-CO1	5	3	MT-CO2	1256	chrM:7841:+	MT-CO1	5313	chrM:6532:+	INCL_NON_REF_SPLICE	YES	13	21830	0.38	0	0.0539	0.0323	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH508_LARGE_INTESTINE	0	0.38	0.0862	FALSE	36	10	0	27	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	11	MT-ND4	2277	chrM:12036:+	MT-ATP8	5512	chrM:8499:+	INCL_NON_REF_SPLICE	YES	129	1559	0.1	0.01	0.0323	0.1185	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0.01	0.1	0.1508	FALSE	216	209	16	281	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	11	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15218	90	0	0.13	0.0323	0.1185	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0	0.13	0.1508	FALSE	231	217	16	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-CO2--MT-CO1	4	6	MT-CO2	1295	chrM:7880:+	MT-CO1	5216	chrM:6435:+	INCL_NON_REF_SPLICE	YES	11	11816	0.48	0	0.0431	0.0646	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH508_LARGE_INTESTINE	0	0.48	0.1077	FALSE	36	10	0	27	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-CO2--MT-CO1	3	9	MT-CO2	1256	chrM:7841:+	MT-CO1	5118	chrM:6337:+	INCL_NON_REF_SPLICE	YES	13	6024	0.48	0	0.0323	0.0969	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH508_LARGE_INTESTINE	0	0.48	0.1292	FALSE	36	10	0	27	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TY	5	1	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0.0108	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH508_LARGE_INTESTINE	1	1	0.0647	FALSE	13	214	14	42	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	1	1	0.0539	FALSE	230	198	14	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	16087	2023	0	0	0.0431	0.0431	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0	0	0.0862	FALSE	231	217	16	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	5	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	1	1	0.0539	FALSE	231	205	14	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH508_LARGE_INTESTINE	1	1	0.0539	FALSE	344	821	44	306	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0539	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH508_LARGE_INTESTINE	1	1	0.0539	FALSE	499	1288	110	792	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TC	3	8	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0.0862	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH508_LARGE_INTESTINE	1	1	0.1185	FALSE	462	80	0	856	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	2	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	18142	0	0	1	0.0431	0.0215	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0	1	0.0646	FALSE	231	217	16	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	6	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	16774	979	0	0.01	0.0323	0.0646	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0	0.01	0.0969	FALSE	231	217	16	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-CO2--MT-CO1	3	4	MT-CO2	1293	chrM:7878:+	MT-CO1	5518	chrM:6737:+	INCL_NON_REF_SPLICE	YES	12	20680	0.37	0	0.0323	0.0431	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH508_LARGE_INTESTINE	0	0.37	0.0754	FALSE	36	10	0	27	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	4	0	MT-ND4	1110	chrM:10869:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	1	1	0.0431	FALSE	230	193	14	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	4	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18713	90	0	0.07	0.0323	0.0431	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0	0.07	0.0754	FALSE	231	217	16	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	4	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	19166	866	0	0.01	0.0323	0.0431	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0	0.01	0.0754	FALSE	231	217	16	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TN	4	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH508_LARGE_INTESTINE	1	1	0.0431	FALSE	369	2501	205	193	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH508_LARGE_INTESTINE	1	1	0.0431	FALSE	369	2501	205	193	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	2	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18005	90	0	0.05	0.0323	0.0215	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0	0.05	0.0538	FALSE	231	217	16	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	2	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	18153	2	0	0.71	0.0323	0.0215	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	0	0.71	0.0538	FALSE	231	216	16	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	ARHGAP5--RP11-320M16.2	3	1	ARHGAP5	8068	chr14:32563592:+	RP11-320M16.2	23419	chr14:32872600:-	ONLY_REF_SPLICE	YES	648	0	0.01	1	0.0323	0.0108	ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,RP11-320M16.2->chr14:32842543-32887180:-	NCIH508_LARGE_INTESTINE	0.01	1	0.0431	FALSE	0	0	0	1	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-CO2--MT-CO1	3	1	MT-CO2	1320	chrM:7905:+	MT-CO1	5908	chrM:7127:+	INCL_NON_REF_SPLICE	YES	10	683	0.29	0.01	0.0323	0.0108	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH508_LARGE_INTESTINE	0.01	0.29	0.0431	FALSE	36	10	0	27	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	NRIP1--AF127936.7	3	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0.0108	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH508_LARGE_INTESTINE	1	1	0.0431	FALSE	292	1546	117	613	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	ARHGAP5--RP11-320M16.2	3	0	ARHGAP5	8068	chr14:32563592:+	RP11-320M16.2	24770	chr14:32854350:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,RP11-320M16.2->chr14:32842543-32887180:-	NCIH508_LARGE_INTESTINE	1	1	0.0323	TRUE	0	0	0	1	0	TRUE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND3--MT-ATP8	3	0	MT-ND3	1069	chrM:10127:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	1	1	0.0323	FALSE	351	233	23	137	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND3--MT-ATP8	3	0	MT-ND3	1094	chrM:10152:+	MT-ATP8	4474	chrM:8493:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	1	1	0.0323	FALSE	351	233	23	137	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND3--MT-ATP8	3	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	1	1	0.0323	FALSE	351	233	23	137	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND3--MT-ATP8	3	0	MT-ND3	1071	chrM:10129:+	MT-ATP8	4502	chrM:8521:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	1	1	0.0323	FALSE	351	233	23	137	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	1	1	0.0323	FALSE	231	204	14	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND4--MT-ATP8	3	0	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH508_LARGE_INTESTINE	1	1	0.0323	FALSE	231	204	14	283	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH508_LARGE_INTESTINE	1	1	0.0323	FALSE	499	1288	110	792	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH508_LARGE_INTESTINE	1	1	0.0323	FALSE	499	1288	110	792	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	MT-TA--MT-TY	3	0	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0323	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH508_LARGE_INTESTINE	1	1	0.0323	FALSE	13	214	14	42	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	PIH1D2--ABCA5	3	0	PIH1D2	2536	chr11:111943463:-	ABCA5	45537	chr17:67252424:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	PIH1D2->PIH1_domain_containing_2,chr11:111934734-111944998:-,ABCA5->ATP_binding_cassette_subfamily_A_member_5,chr17:67240452-67323385:-	NCIH508_LARGE_INTESTINE	1	1	0.0323	TRUE	1	3	0	1	3	TRUE	ACH-000360
NCIH508_LARGE_INTESTINE	TIMM23B--LINC00843	3	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0323	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH508_LARGE_INTESTINE	1	1	0.0323	TRUE	62	24	1	171	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	9	0	0.25	1	0.0215	0.0108	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH508_LARGE_INTESTINE	0.25	1	0.0323	FALSE	164	806	69	479	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	CDK7--PPM1G	2	0	CDK7	1613	chr5:68531280:+	PPM1G	18030	chr2:27610025:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	CDK7->Oncogene{Bushman},chr5:68530668-68573250:+,cyclin-dependent_kinase_7,PPM1G->chr2:27604061-27632554:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1G	NCIH508_LARGE_INTESTINE	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000360
NCIH508_LARGE_INTESTINE	LTN1--APP	1	4	LTN1	32616	chr21:30303477:-	APP	49118	chr21:27394358:-	ONLY_REF_SPLICE	YES	52	491	0.09	0.01	0.0108	0.0431	LTN1->chr21:30300466-30365270:-,listerin_E3_ubiquitin_protein_ligase_1,APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-	NCIH508_LARGE_INTESTINE	0.01	0.09	0.0539	FALSE	0	0	0	1	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0108	0.0431	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH508_LARGE_INTESTINE	1	1	0.0539	FALSE	407	2205	196	549	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0108	0.0431	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH508_LARGE_INTESTINE	1	1	0.0539	FALSE	515	4851	409	746	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	VPS54--WDPCP	2	0	VPS54	8396	chr2:64192969:-	WDPCP	32968	chr2:63877972:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	NEIGHBORS[64303],VPS54->VPS54,_GARP_complex_subunit,chr2:64119280-64246206:-,WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-	NCIH508_LARGE_INTESTINE	1	1	0.0215	FALSE	0	0	0	1	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	ZNF783--LTB4R	2	0	ZNF783	2583	chr7:148963821:+	LTB4R	25232	chr14:24784843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	ZNF783->chr7:148959262-148994393:+,zinc_finger_family_member_783,LTB4R->chr14:24780656-24787242:+,leukotriene_B4_receptor	NCIH508_LARGE_INTESTINE	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000360
NCIH508_LARGE_INTESTINE	HECTD1--RP11-159L20.2	1	1	HECTD1	40659	chr14:31574589:-	RP11-159L20.2	48428	chr14:31251202:-	ONLY_REF_SPLICE	YES	655	0	0	1	0.0108	0.0108	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,RP11-159L20.2->chr14:31204132-31291908:-	NCIH508_LARGE_INTESTINE	0	1	0.0216	FALSE	0	0	0	1	0	FALSE	ACH-000360
NCIH508_LARGE_INTESTINE	NFKBIA--EGLN3	1	1	NFKBIA	1332	chr14:35873624:-	EGLN3	14625	chr14:34596350:-	ONLY_REF_SPLICE	YES	101	1	0.02	0.67	0.0108	0.0108	NFKBIA->ArcherDX_panel,FoundationOne_panel,NFKB_inhibitor_alpha,Oncogene{Bushman},chr14:35870717-35873955:-,EGLN3->chr14:34393437-34931980:-,egl-9_family_hypoxia_inducible_factor_3	NCIH508_LARGE_INTESTINE	0.02	0.67	0.0216	TRUE	0	0	0	1	0	FALSE	ACH-000360
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV38-2DV8--TRAC	1145	40	TRAV38-2DV8	1095	chr14:22749082:+	TRAC	4645	chr14:23016447:+	ONLY_REF_SPLICE	YES	1	0	1	1	9.6512	0.3372	GTEx_FI:{Whole_Blood=[count:12=pct:9.1],Blood=[count:8=pct:4.6],Spleen=[count:5=pct:4.5],Small_Intestine=[count:2=pct:3.6],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6]},HGNC_GENEFAM,TRAV38-2DV8->T_cell_receptor_alpha_variable_38-2/delta_variable_8,chr14:22748988-22749631:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	9.9884	TRUE	26	95	4	1	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	195	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6437	0.2866	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.9303	TRUE	508	994	45	981	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	100	28	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.8429	0.236	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0789	TRUE	477	1352	189	275	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	102	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	267	5	0.28	0.95	0.8598	0.0169	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.95	0.8767	TRUE	519	3926	326	965	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	90	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7586	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7586	FALSE	369	2501	205	193	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	75	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6322	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6322	TRUE	0	0	0	518	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV38-2DV8--TRAC	57	49	TRAV38-2DV8	1437	chr14:22749424:+	TRAC	4645	chr14:23016447:+	INCL_NON_REF_SPLICE	YES	15	0	0.88	1	0.4805	0.413	GTEx_FI:{Whole_Blood=[count:12=pct:9.1],Blood=[count:8=pct:4.6],Spleen=[count:5=pct:4.5],Small_Intestine=[count:2=pct:3.6],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6]},HGNC_GENEFAM,TRAV38-2DV8->T_cell_receptor_alpha_variable_38-2/delta_variable_8,chr14:22748988-22749631:+,TRAC->T-cell_receptor_alpha_constant,chr14:23016447-23021097:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.8935	TRUE	26	95	4	1	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544L4.1--TBC1D7	56	5	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5189	chr6:13328738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.472	0.0421	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5141	TRUE	0	0	0	5	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	194	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	3	3	0.98	0.98	0.0253	1.6352	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	0.98	1.6605	FALSE	344	826	44	306	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544L4.1--TBC1D7	47	5	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5183	chr6:13328744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3962	0.0421	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4383	TRUE	0	0	0	5	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	11	141	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	1	1	0.99	0.99	0.0927	1.1885	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	0.99	1.2812	FALSE	344	821	44	306	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544L4.1--TBC1D7	43	5	CTD-2544L4.1	1933	chr8:111568569:+	TBC1D7	5177	chr6:13328750:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3624	0.0421	CTD-2544L4.1->chr8:111567637-111568747:+,TBC1D7->TBC1_domain_family_member_7,chr6:13266774-13328815:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4045	TRUE	0	0	0	5	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	10	136	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	3029	1	0.05	0.99	0.0843	1.1463	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.99	1.2306	FALSE	344	827	44	306	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	38	6	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3203	0.0506	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3709	FALSE	499	1288	110	792	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	145	MT-ND4	1475	chrM:11234:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	162	1	0.48	0.99	0.0253	1.2222	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	0.99	1.2475	FALSE	344	827	44	306	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	140	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	1	1	0.99	0.99	0.0253	1.1801	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	0.99	1.2054	FALSE	344	826	44	306	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	111	MT-ND4	1503	chrM:11262:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	216	1	0.35	0.99	0.0337	0.9356	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.99	0.9693	FALSE	344	827	44	306	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	30	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2529	0.0421	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.295	FALSE	462	80	0	856	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	19	27	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1602	0.2276	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3878	FALSE	369	2501	205	193	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	8	56	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0.472	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5394	FALSE	369	2501	205	193	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	71	MT-ND4	1566	chrM:11325:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	409	1	0.15	0.99	0.0253	0.5985	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.99	0.6238	FALSE	344	827	44	306	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAV38-2DV8--TRAJ26	20	1	TRAV38-2DV8	1643	chr14:22749630:+	TRAJ26	4644	chr14:22987423:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1686	0.0084	HGNC_GENEFAM,TRAV38-2DV8->T_cell_receptor_alpha_variable_38-2/delta_variable_8,chr14:22748988-22749631:+,TRAJ26->T_cell_receptor_alpha_joining_26,chr14:22987424-22987483:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.177	TRUE	0	0	0	1	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	20	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1686	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1686	FALSE	369	2501	205	193	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	16	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	41	16	0.4	0.63	0.1349	0.0927	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.63	0.2276	TRUE	267	562	48	632	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	54	MT-CO3	1138	chrM:9344:+	MT-ATP6	4905	chrM:8647:+	INCL_NON_REF_SPLICE	YES	2	13	0.97	0.82	0.0421	0.4552	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.97	0.4973	FALSE	189	492	56	216	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	58	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	1	1	0.98	0.98	0.0337	0.4889	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	0.98	0.5226	FALSE	344	821	44	306	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	57	MT-CO3	1220	chrM:9426:+	MT-ATP6	4919	chrM:8661:+	INCL_NON_REF_SPLICE	YES	4	22	0.94	0.73	0.0337	0.4805	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	0.94	0.5142	FALSE	189	492	56	216	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	53	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	8	0.95	0.88	0.0337	0.4467	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.95	0.4804	FALSE	189	492	56	216	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	17	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	42	1433	0.3	0.01	0.1433	0.0084	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.3	0.1517	TRUE	0	0	0	434	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	15	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1264	0.0506	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.177	FALSE	499	1288	110	792	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	10	26	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0843	0.2192	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3035	FALSE	369	2501	205	193	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	16	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1349	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1349	FALSE	13	9	0	364	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	16	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1349	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1349	TRUE	1	39	0	134	39	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	16	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1349	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1349	FALSE	369	2501	205	193	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	47	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	4	0	0.93	1	0.0337	0.3962	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.4299	FALSE	344	826	44	306	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	31	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	176	0	0.18	1	0.0674	0.2613	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.3287	FALSE	344	827	44	306	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	41	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0.3456	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3793	FALSE	499	1288	110	792	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	14	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.118	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.118	FALSE	13	9	0	364	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	19	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0759	0.1602	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2361	FALSE	499	1288	110	792	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	8	20	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0674	0.1686	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.236	TRUE	274	363	69	150	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	12	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1011	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1011	TRUE	347	1186	183	220	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	12	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1011	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1011	TRUE	0	0	0	518	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	3	32	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0.2697	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.295	TRUE	160	277	29	98	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0759	0.0421	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.118	FALSE	462	80	0	856	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	28	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0253	0.236	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2613	FALSE	499	1288	110	792	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	8	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	39	16	0.28	0.48	0.0674	0.059	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.48	0.1264	TRUE	267	562	48	632	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-254I22.1--CTD-2337A12.1	9	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0759	0.0084	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0843	TRUE	6	15	3	35	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIPEPP3--ABHD12	9	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0759	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0759	TRUE	64	202	9	44	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0674	FALSE	462	80	0	856	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMB8--MT2A	8	0	PSMB8	2684	chr6:32810797:-	MT2A	8371	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0	PSMB8->chr6:32808494-32812480:-,proteasome_subunit_beta_8,MT2A->chr16:56642111-56643409:+,metallothionein_2A	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0674	TRUE	0	0	0	3	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	19	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0253	0.1602	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.1855	FALSE	499	1288	110	792	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.059	0.0084	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	0.0674	FALSE	189	492	56	216	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	1	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	1	1	0.89	0.89	0.059	0.0084	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.89	0.0674	FALSE	344	821	44	306	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	17	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	16	0	0.56	1	0.0253	0.1433	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	1	0.1686	FALSE	344	827	44	306	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	7	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.059	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.059	FALSE	369	2501	205	193	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	15	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0253	0.1264	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.1517	FALSE	344	826	44	306	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	13	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0253	0.1096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1349	FALSE	499	1288	110	792	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0506	FALSE	189	492	56	216	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0506	FALSE	189	492	56	216	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	6	0	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0506	TRUE	13	49	2	38	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-254I22.1--CTD-2337A12.1	6	0	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0506	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0506	TRUE	0	7	2	11	5	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZMIZ1--EEF1A1	6	0	ZMIZ1	29626	chr10:81072538:+	EEF1A1	40845	chr6:74228494:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0506	0	ZMIZ1->Oncogene{Bushman},chr10:80828792-81076276:+,zinc_finger_MIZ-type_containing_1,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0506	TRUE	0	0	0	1	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0421	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0421	FALSE	499	1288	110	792	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	2	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	1	1	0.86	0.86	0.0337	0.0169	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	0.86	0.0506	FALSE	344	821	44	306	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	5	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0253	0.0421	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0674	FALSE	462	80	0	856	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	42	1317	0.11	0	0.0337	0.0084	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.11	0.0421	FALSE	0	0	0	434	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-319G9.5--WWOX	4	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	28	1	0.15	0.0337	0.0084	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.0421	FALSE	154	425	28	76	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPLP0--RGS1	4	1	RPLP0	2869	chr12:120637170:-	RGS1	8613	chr1:192544919:+	INCL_NON_REF_SPLICE	YES	3728	0	0	1	0.0337	0.0084	RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0,RGS1->Oncogene{Bushman},chr1:192544857-192549161:+,regulator_of_G-protein_signaling_1	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0421	FALSE	0	0	0	1	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	4	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0337	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0337	TRUE	0	16	0	53	13	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0337	FALSE	369	2501	205	193	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0337	FALSE	369	2501	205	193	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VIM--ACTB	4	0	VIM	2136	chr10:17271393:+	ACTB	15629	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0337	TRUE	0	0	0	9	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL2RA--RBM17	3	3	IL2RA	1238	chr10:6104051:-	RBM17	15670	chr10:6139011:+	ONLY_REF_SPLICE	YES	2193	430	0	0.01	0.0253	0.0253	LOCAL_INVERSION:-:+:[26662],IL2RA->Oncogene{Bushman},chr10:6052652-6104288:-,interleukin_2_receptor_subunit_alpha,RBM17->RNA_binding_motif_protein_17,chr10:6130950-6159420:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0506	FALSE	0	0	0	1	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	2	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	1	1	0.83	0.83	0.0253	0.0169	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.83	0.0422	FALSE	344	821	44	306	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZMIZ1--EEF1A1	3	2	ZMIZ1	29639	chr10:81072551:+	EEF1A1	40858	chr6:74228481:-	INCL_NON_REF_SPLICE	YES	1271	13133	0	0	0.0253	0.0169	ZMIZ1->Oncogene{Bushman},chr10:80828792-81076276:+,zinc_finger_MIZ-type_containing_1,EEF1A1->Oncogene{Bushman},chr6:74225473-74233520:-,eukaryotic_translation_elongation_factor_1_alpha_1	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0422	FALSE	0	0	0	1	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IL2RA--SET	3	1	IL2RA	1238	chr10:6104051:-	SET	18206	chr9:131453449:+	ONLY_REF_SPLICE	YES	2193	601	0	0.01	0.0253	0.0084	IL2RA->Oncogene{Bushman},chr10:6052652-6104288:-,interleukin_2_receptor_subunit_alpha,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0337	FALSE	0	0	0	2	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	1	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	6	0	0.4	1	0.0253	0.0084	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.0337	FALSE	189	492	56	216	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	42	1173	0.09	0	0.0253	0.0084	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0337	FALSE	0	0	0	434	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	NO	42	1315	0.09	0	0.0253	0.0084	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0337	FALSE	0	0	0	434	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	1	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	42	1410	0.09	0	0.0253	0.0084	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0337	FALSE	0	0	0	434	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	42	1295	0.09	0	0.0253	0.0084	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0337	FALSE	0	0	0	434	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	3	0	FBRSL1	12572	chr12:133136816:+	NOC4L	33548	chr12:132635803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	3	48	0	26	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LIF--MT-CO1	3	0	LIF	3257	chr22:30639841:-	MT-CO1	10305	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0253	0	LIF->chr22:30636436-30642840:-,leukemia_inhibitory_factor,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	FALSE	0	0	0	8	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0253	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	FALSE	189	492	56	216	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0253	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	FALSE	499	1288	110	792	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VIM--ACTB	3	0	VIM	2124	chr10:17271381:+	ACTB	17037	chr7:5568815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	1	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VIM--ACTB	3	0	VIM	2082	chr10:17271339:+	ACTB	15618	chr7:5570234:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0253	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	0	0	0	9	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	7	RP11-444D3.1	4602	chr12:24521497:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	10	0	0.44	1	0.0084	0.059	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.0674	TRUE	16	11	2	20	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	2	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0.0084	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	FALSE	46	201	11	112	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-254I22.1--CTD-2337A12.1	2	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	7741	chr5:95644428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0.0084	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0253	TRUE	1	1	0	7	1	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	18992	chr12:23999127:-	ONLY_REF_SPLICE	NO	0	17	1	0.26	0.0084	0.0421	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.0505	TRUE	2	0	0	1	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--AP3B1	2	0	CPSF6	11046	chr12:69656342:+	AP3B1	26296	chr5:77512061:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DENND1A--PSMB7	2	0	DENND1A	2335	chr9:126641230:-	PSMB7	50112	chr9:127146935:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Heart_-_Atrial_Appendage=1},DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	1	0	2	1	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF3H--RAD21	2	0	EIF3H	7051	chr8:117738255:-	RAD21	24431	chr8:117879000:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	LOCAL_REARRANGEMENT:-:[79010],EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	7	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--TNPO2	2	0	OAZ1	1259	chr19:2269743:+	TNPO2	11025	chr19:12831804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0169	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,TNPO2->chr19:12810008-12834825:-,transportin_2	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0169	TRUE	0	0	0	1	0	TRUE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FLNA--HLA-B	1	2	FLNA	19389	chrX:153579277:-	HLA-B	26371	chr6:31323369:-	ONLY_REF_SPLICE	YES	958	4022	0	0	0.0084	0.0169	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.05%,FLNA->chrX:153576892-153603006:-,filamin_A,HLA-B->chr6:31321649-31324965:-,major_histocompatibility_complex,_class_I,_B	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0253	FALSE	0	0	0	1	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCAS1--SNHG1	1	1	BCAS1	14147	chr20:52569971:-	SNHG1	28585	chr11:62620153:-	ONLY_REF_SPLICE	NO	61	392	0.03	0.01	0.0084	0.0084	BCAS1->breast_carcinoma_amplified_sequence_1,chr20:52553316-52687304:-,SNHG1->chr11:62619460-62623386:-,small_nucleolar_RNA_host_gene_1	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0168	FALSE	0	0	0	1	0	FALSE	ACH-000077
MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0084	0.0084	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MJ_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0168	FALSE	16	356	14	466	0	FALSE	ACH-000077
HCC2279_LUNG	MT-TA--MT-TN	82	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0776	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2279_LUNG	1	1	1.0776	FALSE	369	2501	205	193	0	FALSE	ACH-000731
HCC2279_LUNG	CACNB4--VWC2	61	31	CACNB4	1750	chr2:152954844:-	VWC2	35978	chr7:49951630:+	ONLY_REF_SPLICE	YES	17	0	0.84	1	0.8016	0.4074	CACNB4->calcium_voltage-gated_channel_auxiliary_subunit_beta_4,chr2:152689290-152955593:-,VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2	HCC2279_LUNG	0.84	1	1.209	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	MT-TA--MT-TC	59	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7753	0.0526	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2279_LUNG	1	1	0.8279	FALSE	462	80	0	856	0	FALSE	ACH-000731
HCC2279_LUNG	TIMM23B--LINC00843	39	6	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5125	0.0788	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC2279_LUNG	1	1	0.5913	TRUE	508	994	45	981	0	FALSE	ACH-000731
HCC2279_LUNG	ST6GALNAC3--PEPD	27	24	ST6GALNAC3	1166	chr1:76540569:+	PEPD	30972	chr19:33892775:-	ONLY_REF_SPLICE	YES	6	172	0.89	0.23	0.3548	0.3154	ST6GALNAC3->ST6_N-acetylgalactosaminide_alpha-2,6-sialyltransferase_3,chr1:76540404-77100286:+,PEPD->chr19:33877856-34012700:-,peptidase_D	HCC2279_LUNG	0.23	0.89	0.6702	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	MT-TA--MT-TN	14	65	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.184	0.8542	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2279_LUNG	1	1	1.0382	FALSE	369	2501	205	193	0	FALSE	ACH-000731
HCC2279_LUNG	MT-TA--MT-TN	11	76	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1446	0.9987	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2279_LUNG	1	1	1.1433	FALSE	369	2501	205	193	0	FALSE	ACH-000731
HCC2279_LUNG	PLXDC1--TAF13	28	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.368	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCC2279_LUNG	1	1	0.368	TRUE	7	10	0	216	0	FALSE	ACH-000731
HCC2279_LUNG	CACNB4--VWC2	19	34	CACNB4	4497	chr2:152828059:-	VWC2	35978	chr7:49951630:+	ONLY_REF_SPLICE	YES	13	0	0.8	1	0.2497	0.4468	CACNB4->calcium_voltage-gated_channel_auxiliary_subunit_beta_4,chr2:152689290-152955593:-,VWC2->chr7:49813257-49961546:+,von_Willebrand_factor_C_domain_containing_2	HCC2279_LUNG	0.8	1	0.6965	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	LRP12--ATP6V0D2	24	12	LRP12	1206	chr8:105601047:-	ATP6V0D2	24682	chr8:87111218:+	INCL_NON_REF_SPLICE	YES	97	3	0.27	0.92	0.3154	0.1577	LRP12->LDL_receptor_related_protein_12,chr8:105501459-105601252:-,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	HCC2279_LUNG	0.27	0.92	0.4731	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	MT-TA--MT-TN	10	46	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1314	0.6045	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2279_LUNG	1	1	0.7359	FALSE	369	2501	205	193	0	FALSE	ACH-000731
HCC2279_LUNG	PTK2--AGO2	17	16	PTK2	9058	chr8:141935760:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	297	3	0.1	0.92	0.2234	0.2103	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	HCC2279_LUNG	0.1	0.92	0.4337	FALSE	0	0	0	3	0	FALSE	ACH-000731
HCC2279_LUNG	TIMM23--RP11-464F9.1	21	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.276	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC2279_LUNG	1	1	0.276	TRUE	519	3926	326	965	0	FALSE	ACH-000731
HCC2279_LUNG	RP11-123O10.4--GRIP1	20	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2628	0.0394	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC2279_LUNG	1	1	0.3022	FALSE	416	2512	207	587	0	FALSE	ACH-000731
HCC2279_LUNG	OR51S1--TP53I11	19	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2497	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HCC2279_LUNG	1	1	0.2497	TRUE	402	216	10	229	0	FALSE	ACH-000731
HCC2279_LUNG	MT-TA--MT-TN	18	1	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2365	0.0131	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2279_LUNG	1	1	0.2496	FALSE	369	2501	205	193	0	FALSE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	7	44	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.092	0.5782	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	1	1	0.6702	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	MT-TA--MT-TN	13	20	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1708	0.2628	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2279_LUNG	1	1	0.4336	FALSE	369	2501	205	193	0	FALSE	ACH-000731
HCC2279_LUNG	LRP12--ATP6V0D2	14	14	LRP12	1206	chr8:105601047:-	ATP6V0D2	24086	chr8:87110622:+	ONLY_REF_SPLICE	YES	97	0	0.22	1	0.184	0.184	LRP12->LDL_receptor_related_protein_12,chr8:105501459-105601252:-,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	HCC2279_LUNG	0.22	1	0.368	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	NRIP1--AF127936.7	16	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2103	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC2279_LUNG	1	1	0.2103	FALSE	292	1546	117	613	0	FALSE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	4	46	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	1	0.94	0.98	0.0526	0.6045	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	0.94	0.98	0.6571	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	PTK2--AGO2	13	7	PTK2	2092	chr8:142011224:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	126	3	0.14	0.87	0.1708	0.092	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	HCC2279_LUNG	0.14	0.87	0.2628	FALSE	0	6	0	3	0	FALSE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	3	46	MT-CO3	1136	chrM:9342:+	MT-ATP6	4831	chrM:8573:+	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.0394	0.6045	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	0.94	1	0.6439	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	RP11-680G10.1--GSE1	14	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.68	0.184	0.0131	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC2279_LUNG	0.68	1	0.1971	TRUE	458	1351	185	561	0	FALSE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	3	44	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	0	24	1	0.66	0.0394	0.5782	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	0.66	1	0.6176	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	MT-TA--MT-TN	8	24	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1051	0.3154	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2279_LUNG	1	1	0.4205	FALSE	369	2501	205	193	0	FALSE	ACH-000731
HCC2279_LUNG	PTK2--AGO2	9	20	PTK2	9058	chr8:141935760:-	AGO2	67776	chr8:141616013:-	INCL_NON_REF_SPLICE	YES	297	0	0.09	1	0.1183	0.2628	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	HCC2279_LUNG	0.09	1	0.3811	FALSE	0	0	0	1	0	FALSE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	4	38	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0.4994	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	1	1	0.552	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	MTATP6P1--MT-ND1	13	1	MTATP6P1	1126	chr1:569201:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	1021	6505	0.01	0	0.1708	0.0131	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC2279_LUNG	0	0.01	0.1839	FALSE	16	0	0	13	0	FALSE	ACH-000731
HCC2279_LUNG	LRP12--ATP6V0D2	9	13	LRP12	1206	chr8:105601047:-	ATP6V0D2	24597	chr8:87111133:+	ONLY_REF_SPLICE	YES	97	0	0.18	1	0.1183	0.1708	LRP12->LDL_receptor_related_protein_12,chr8:105501459-105601252:-,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	HCC2279_LUNG	0.18	1	0.2891	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	RP11-59N23.3--CMAS	9	11	RP11-59N23.3	1459	chr12:21815705:+	CMAS	6999	chr12:22208083:+	ONLY_REF_SPLICE	YES	4	273	0.83	0.07	0.1183	0.1446	RP11-59N23.3->chr12:21815247-21912966:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	HCC2279_LUNG	0.07	0.83	0.2629	TRUE	0	14	5	5	10	TRUE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	11	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.1446	0.0131	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	0.8	1	0.1577	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	4	28	MT-CO3	1049	chrM:9255:+	MT-ATP6	5317	chrM:9059:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0.368	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	1	1	0.4206	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	MT-TA--MT-TN	11	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1446	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2279_LUNG	1	1	0.1446	FALSE	369	2501	205	193	0	FALSE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	6	19	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0788	0.2497	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	1	1	0.3285	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	MT-TA--MT-TN	10	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1314	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2279_LUNG	1	1	0.1314	FALSE	369	2501	205	193	0	FALSE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	3	24	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.3154	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	1	1	0.3548	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	TIMP3--MT-ND4	9	0	TIMP3	5621	chr22:33255392:+	MT-ND4	12727	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1183	0	TIMP3->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_3,chr22:33197687-33259030:+,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HCC2279_LUNG	1	1	0.1183	FALSE	0	0	0	10	0	FALSE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	3	23	MT-CO3	1038	chrM:9244:+	MT-ATP6	5188	chrM:8930:+	INCL_NON_REF_SPLICE	YES	0	29	1	0.47	0.0394	0.3022	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	0.47	1	0.3416	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	NRIP1--AF127936.7	8	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	19	0	0.37	1	0.1051	0.0394	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC2279_LUNG	0.37	1	0.1445	FALSE	125	705	46	456	0	FALSE	ACH-000731
HCC2279_LUNG	NUDCD1--SYBU	8	3	NUDCD1	11896	chr8:110283234:-	SYBU	34627	chr8:110592231:-	ONLY_REF_SPLICE	YES	208	27	0.05	0.29	0.1051	0.0394	NUDCD1->NudC_domain_containing_1,chr8:110253148-110346614:-,SYBU->chr8:110586207-110704020:-,syntabulin	HCC2279_LUNG	0.05	0.29	0.1445	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	RP11-680G10.1--GSE1	8	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	19	1	0.32	0.1051	0.0131	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC2279_LUNG	0.32	1	0.1182	TRUE	465	1949	224	605	0	FALSE	ACH-000731
HCC2279_LUNG	CTSD--MT-CO1	8	0	CTSD	6192	chr11:1778562:-	MT-CO1	13251	chrM:6357:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1051	0	CTSD->cathepsin_D,chr11:1773982-1785222:-,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC2279_LUNG	1	1	0.1051	FALSE	0	0	0	1	0	FALSE	ACH-000731
HCC2279_LUNG	MT-ATP6--MT-CO1	8	0	MT-ATP6	1117	chrM:8643:+	MT-CO1	5171	chrM:6393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1051	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC2279_LUNG	1	1	0.1051	FALSE	183	104	9	328	0	FALSE	ACH-000731
HCC2279_LUNG	MT-ATP6--MT-CO1	8	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1051	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC2279_LUNG	1	1	0.1051	FALSE	183	104	9	328	0	FALSE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	3	20	MT-CO3	1036	chrM:9242:+	MT-ATP6	5156	chrM:8898:+	INCL_NON_REF_SPLICE	YES	0	16	1	0.59	0.0394	0.2628	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	0.59	1	0.3022	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	8	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1051	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	1	1	0.1051	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	MT-TA--MT-TC	7	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.092	0.0394	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2279_LUNG	1	1	0.1314	FALSE	462	80	0	856	0	FALSE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	3	18	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.2365	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	1	1	0.2759	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	NRIP1--AF127936.7	6	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	22	0	0.35	1	0.0788	0.0788	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC2279_LUNG	0.35	1	0.1576	FALSE	164	806	69	479	0	FALSE	ACH-000731
HCC2279_LUNG	MTND4P12--MT-ATP8	7	0	MTND4P12	1213	chr5:134263514:-	MT-ATP8	5484	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.092	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2279_LUNG	1	1	0.092	FALSE	19	17	1	5	0	FALSE	ACH-000731
HCC2279_LUNG	RP11-59N23.3--CMAS	4	11	RP11-59N23.3	2631	chr12:21913019:+	CMAS	6999	chr12:22208083:+	INCL_NON_REF_SPLICE	YES	0	273	1	0.05	0.0526	0.1446	RP11-59N23.3->chr12:21815247-21912966:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	HCC2279_LUNG	0.05	1	0.1972	TRUE	0	0	0	3	0	TRUE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	3	13	MT-CO3	1020	chrM:9226:+	MT-ATP6	5383	chrM:9125:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.1708	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	1	1	0.2102	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	MT-TA--MT-TN	6	1	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0788	0.0131	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2279_LUNG	1	1	0.0919	FALSE	369	2501	205	193	0	FALSE	ACH-000731
HCC2279_LUNG	MT-TA--MT-TN	6	1	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0788	0.0131	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2279_LUNG	1	1	0.0919	FALSE	369	2501	205	193	0	FALSE	ACH-000731
HCC2279_LUNG	MT-ATP6--MT-CO1	6	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0788	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC2279_LUNG	1	1	0.0788	FALSE	183	104	9	328	0	FALSE	ACH-000731
HCC2279_LUNG	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0788	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2279_LUNG	1	1	0.0788	FALSE	462	80	0	856	0	FALSE	ACH-000731
HCC2279_LUNG	ELF2--SLC7A11	5	3	ELF2	1252	chr4:140098121:-	SLC7A11	34472	chr4:139104459:-	ONLY_REF_SPLICE	YES	10	30	0.44	0.21	0.0657	0.0394	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,SLC7A11->chr4:139085251-139163503:-,solute_carrier_family_7_member_11	HCC2279_LUNG	0.21	0.44	0.1051	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	NUCB1--PLEKHA4	5	3	NUCB1	1882	chr19:49404188:+	PLEKHA4	28513	chr19:49344567:-	ONLY_REF_SPLICE	YES	291	3	0.03	0.73	0.0657	0.0394	LOCAL_INVERSION:+:-:[31418],NUCB1->chr19:49403307-49426629:+,nucleobindin_1,PLEKHA4->chr19:49340354-49371889:-,pleckstrin_homology_domain_containing_A4	HCC2279_LUNG	0.03	0.73	0.1051	TRUE	0	0	0	1	0	FALSE	ACH-000731
HCC2279_LUNG	GALNT13--SCN2A	5	2	GALNT13	4761	chr2:154801152:+	SCN2A	29366	chr2:166152283:+	ONLY_REF_SPLICE	YES	27	0	0.21	1	0.0657	0.0263	GALNT13->chr2:154728426-155310361:+,polypeptide_N-acetylgalactosaminyltransferase_13,SCN2A->chr2:166095912-166248818:+,sodium_voltage-gated_channel_alpha_subunit_2	HCC2279_LUNG	0.21	1	0.092	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	INADL--DNAJC6	4	6	INADL	36863	chr1:62483619:+	DNAJC6	68120	chr1:65831568:+	ONLY_REF_SPLICE	YES	26	24	0.28	0.29	0.0526	0.0788	{Klijn_CCL:Lung=1},INADL->Oncogene{Bushman},chr1:62208149-62629592:+,DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+	HCC2279_LUNG	0.28	0.29	0.1314	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0657	0.0263	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC2279_LUNG	1	1	0.092	FALSE	515	4851	409	746	0	FALSE	ACH-000731
HCC2279_LUNG	CTD-2023M8.1--DEFB112	4	5	CTD-2023M8.1	1176	chr5:18746107:-	DEFB112	6354	chr6:50011514:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0526	0.0657	CTD-2023M8.1->chr5:18704542-18746282:-,DEFB112->chr6:50011288-50016364:-,defensin_beta_112	HCC2279_LUNG	1	1	0.1183	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	MT-ATP6--MT-CO1	5	0	MT-ATP6	1564	chrM:9090:+	MT-CO1	5965	chrM:7187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0657	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC2279_LUNG	1	1	0.0657	FALSE	183	104	9	328	0	FALSE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	5	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0657	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	1	1	0.0657	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	MT-TA--MT-TN	5	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0657	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC2279_LUNG	1	1	0.0657	FALSE	369	2501	205	193	0	FALSE	ACH-000731
HCC2279_LUNG	MT-ATP6--MT-CO1	4	3	MT-ATP6	1568	chrM:9094:+	MT-CO1	5184	chrM:6406:+	INCL_NON_REF_SPLICE	YES	1268	21179	0.01	0	0.0526	0.0394	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC2279_LUNG	0	0.01	0.092	FALSE	183	104	9	328	0	FALSE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	3	7	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	3	0	0.77	1	0.0394	0.092	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	0.77	1	0.1314	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	ZCCHC4--RP11-302F12.3	4	2	ZCCHC4	3354	chr4:25317022:+	RP11-302F12.3	20139	chr4:25620871:+	ONLY_REF_SPLICE	YES	19	0	0.24	1	0.0526	0.0263	ZCCHC4->chr4:25314407-25372005:+,zinc_finger_CCHC-type_containing_4,RP11-302F12.3->chr4:25610333-25621087:+	HCC2279_LUNG	0.24	1	0.0789	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	MT-ATP6--MT-CO1	4	1	MT-ATP6	1135	chrM:8661:+	MT-CO1	5178	chrM:6400:+	INCL_NON_REF_SPLICE	YES	9068	20881	0	0	0.0526	0.0131	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC2279_LUNG	0	0	0.0657	FALSE	183	104	9	328	0	FALSE	ACH-000731
HCC2279_LUNG	MT-ATP6--MT-CO1	4	1	MT-ATP6	1121	chrM:8647:+	MT-CO1	4698	chrM:5920:+	INCL_NON_REF_SPLICE	YES	8901	0	0	1	0.0526	0.0131	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC2279_LUNG	0	1	0.0657	FALSE	182	97	9	327	0	FALSE	ACH-000731
HCC2279_LUNG	MT-TA--MT-TC	3	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.0657	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2279_LUNG	1	1	0.1051	FALSE	462	80	0	856	0	FALSE	ACH-000731
HCC2279_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1179	chrM:8705:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC2279_LUNG	1	1	0.0526	FALSE	183	104	9	328	0	FALSE	ACH-000731
HCC2279_LUNG	MT-TA--MT-TC	3	4	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.0526	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC2279_LUNG	1	1	0.092	FALSE	462	80	0	856	0	FALSE	ACH-000731
HCC2279_LUNG	MTATP6P1--MT-ND1	4	0	MTATP6P1	1158	chr1:569233:+	MT-ND1	5165	chrM:3790:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC2279_LUNG	1	1	0.0526	FALSE	16	0	0	13	0	FALSE	ACH-000731
HCC2279_LUNG	MTND4P12--MT-ATP8	4	0	MTND4P12	1966	chr5:134262761:-	MT-ATP8	5439	chrM:8427:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0526	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2279_LUNG	1	1	0.0526	FALSE	19	17	1	5	0	FALSE	ACH-000731
HCC2279_LUNG	APP--MT-ND2	3	3	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	2286	4985	0	0	0.0394	0.0394	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	HCC2279_LUNG	0	0	0.0788	FALSE	0	1	0	51	0	FALSE	ACH-000731
HCC2279_LUNG	MT-ATP6--MT-CO1	3	3	MT-ATP6	1547	chrM:9073:+	MT-CO1	5163	chrM:6385:+	INCL_NON_REF_SPLICE	NO	3141	21533	0	0	0.0394	0.0394	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC2279_LUNG	0	0	0.0788	FALSE	183	104	9	328	0	FALSE	ACH-000731
HCC2279_LUNG	MT-ND4--MT-CO2	3	3	MT-ND4	1942	chrM:11701:+	MT-CO2	5460	chrM:7667:+	INCL_NON_REF_SPLICE	YES	13035	1	0	0.86	0.0394	0.0394	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2279_LUNG	0	0.86	0.0788	FALSE	5	1	0	19	0	FALSE	ACH-000731
HCC2279_LUNG	PTK2--AGO2	2	7	PTK2	2337	chr8:142010979:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	212	3	0.04	0.75	0.0263	0.092	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	HCC2279_LUNG	0.04	0.75	0.1183	FALSE	0	6	0	3	0	FALSE	ACH-000731
HCC2279_LUNG	C15orf57--CBX3	3	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	36	43	0.12	0.1	0.0394	0.0263	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC2279_LUNG	0.1	0.12	0.0657	TRUE	267	562	48	632	0	FALSE	ACH-000731
HCC2279_LUNG	ELF2--SLC7A11	2	6	ELF2	1252	chr4:140098121:-	SLC7A11	33348	chr4:139106398:-	ONLY_REF_SPLICE	YES	10	18	0.44	0.31	0.0263	0.0788	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,SLC7A11->chr4:139085251-139163503:-,solute_carrier_family_7_member_11	HCC2279_LUNG	0.31	0.44	0.1051	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	9637	0	0	1	0.0394	0.0263	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC2279_LUNG	0	1	0.0657	FALSE	182	97	9	327	0	FALSE	ACH-000731
HCC2279_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2838	23650	0	0	0.0394	0.0131	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC2279_LUNG	0	0	0.0525	FALSE	183	104	9	328	0	FALSE	ACH-000731
HCC2279_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1436	chrM:8962:+	MT-CO1	5163	chrM:6385:+	INCL_NON_REF_SPLICE	YES	8555	21533	0	0	0.0394	0.0131	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC2279_LUNG	0	0	0.0525	FALSE	183	104	9	328	0	FALSE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	6	0	0.4	1	0.0394	0.0131	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	0.4	1	0.0525	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	MT-ND4--MT-CO2	3	1	MT-ND4	1299	chrM:11058:+	MT-CO2	5514	chrM:7721:+	INCL_NON_REF_SPLICE	YES	14617	6131	0	0	0.0394	0.0131	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2279_LUNG	0	0	0.0525	FALSE	5	1	0	19	0	FALSE	ACH-000731
HCC2279_LUNG	MT-ND4--MT-CO2	3	1	MT-ND4	1469	chrM:11228:+	MT-CO2	5500	chrM:7707:+	INCL_NON_REF_SPLICE	YES	14839	2775	0	0	0.0394	0.0131	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2279_LUNG	0	0	0.0525	FALSE	5	1	0	19	0	FALSE	ACH-000731
HCC2279_LUNG	MTATP6P1--MT-ND1	3	1	MTATP6P1	1111	chr1:569186:+	MT-ND1	4880	chrM:3505:+	INCL_NON_REF_SPLICE	NO	745	6084	0.01	0	0.0394	0.0131	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC2279_LUNG	0	0.01	0.0525	FALSE	16	0	0	13	0	FALSE	ACH-000731
HCC2279_LUNG	MTATP6P1--MT-ND1	3	1	MTATP6P1	1106	chr1:569181:+	MT-ND1	5099	chrM:3724:+	INCL_NON_REF_SPLICE	YES	615	9138	0.01	0	0.0394	0.0131	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC2279_LUNG	0	0.01	0.0525	FALSE	16	0	0	13	0	FALSE	ACH-000731
HCC2279_LUNG	MTATP6P1--MT-ND1	3	1	MTATP6P1	1098	chr1:569173:+	MT-ND1	4697	chrM:3322:+	INCL_NON_REF_SPLICE	YES	438	0	0.01	1	0.0394	0.0131	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC2279_LUNG	0.01	1	0.0525	FALSE	16	0	0	13	0	FALSE	ACH-000731
HCC2279_LUNG	PTK2--AGO2	1	9	PTK2	5802	chr8:141958765:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	YES	257	3	0.04	0.77	0.0131	0.1183	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	HCC2279_LUNG	0.04	0.77	0.1314	FALSE	0	0	0	2	0	FALSE	ACH-000731
HCC2279_LUNG	CMTM4--RP11-1M18.1	3	0	CMTM4	1368	chr16:66730243:-	RP11-1M18.1	16246	chrX:6624507:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0394	0	CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,RP11-1M18.1->chrX:6585906-6639585:-	HCC2279_LUNG	1	1	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC2279_LUNG	1	1	0.0394	FALSE	183	104	9	328	0	FALSE	ACH-000731
HCC2279_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC2279_LUNG	1	1	0.0394	FALSE	183	104	9	328	0	FALSE	ACH-000731
HCC2279_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC2279_LUNG	1	1	0.0394	FALSE	183	104	9	328	0	FALSE	ACH-000731
HCC2279_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC2279_LUNG	1	1	0.0394	FALSE	183	104	9	328	0	FALSE	ACH-000731
HCC2279_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1083	chrM:9289:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC2279_LUNG	1	1	0.0394	FALSE	189	492	56	216	0	FALSE	ACH-000731
HCC2279_LUNG	MT-ND4--MT-CO2	3	0	MT-ND4	1268	chrM:11027:+	MT-CO2	5540	chrM:7747:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2279_LUNG	1	1	0.0394	FALSE	5	1	0	19	0	FALSE	ACH-000731
HCC2279_LUNG	MT-ND4--MT-CO2	3	0	MT-ND4	1216	chrM:10975:+	MT-CO2	5541	chrM:7748:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_REARRANGEMENT:+:[2491],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC2279_LUNG	1	1	0.0394	FALSE	5	1	0	19	0	FALSE	ACH-000731
HCC2279_LUNG	MTND4P12--MT-ATP8	3	0	MTND4P12	1989	chr5:134262738:-	MT-ATP8	5464	chrM:8452:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC2279_LUNG	1	1	0.0394	FALSE	19	17	1	5	0	FALSE	ACH-000731
HCC2279_LUNG	PTK2--AGO2	1	8	PTK2	3651	chr8:141993941:-	AGO2	68894	chr8:141595410:-	ONLY_REF_SPLICE	NO	232	3	0.04	0.75	0.0131	0.1051	GTEx&tcga_normals:1/3694=0.03%,NEIGHBORS[22281],PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-	HCC2279_LUNG	0.04	0.75	0.1182	FALSE	0	0	0	2	0	FALSE	ACH-000731
HCC2279_LUNG	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0.0394	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC2279_LUNG	1	1	0.0657	FALSE	407	2205	196	549	0	FALSE	ACH-000731
HCC2279_LUNG	LRP12--ATP6V0D2	1	6	LRP12	1206	chr8:105601047:-	ATP6V0D2	25802	chr8:87125938:+	ONLY_REF_SPLICE	NO	97	18	0.07	0.28	0.0131	0.0788	LRP12->LDL_receptor_related_protein_12,chr8:105501459-105601252:-,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	HCC2279_LUNG	0.07	0.28	0.0919	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	LRP12--ATP6V0D2	2	1	LRP12	1206	chr8:105601047:-	ATP6V0D2	26974	chr8:87151686:+	ONLY_REF_SPLICE	YES	97	18	0.03	0.14	0.0263	0.0131	LRP12->LDL_receptor_related_protein_12,chr8:105501459-105601252:-,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	HCC2279_LUNG	0.03	0.14	0.0394	TRUE	0	0	0	1	0	FALSE	ACH-000731
HCC2279_LUNG	PRSS23--PICALM	2	1	PRSS23	8412	chr11:86534635:+	PICALM	25674	chr11:85742653:-	ONLY_REF_SPLICE	YES	75	265	0.04	0.01	0.0263	0.0131	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},PRSS23->chr11:86502101-86663952:+,protease,_serine_23,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	HCC2279_LUNG	0.01	0.04	0.0394	FALSE	0	3	0	5	0	FALSE	ACH-000731
HCC2279_LUNG	TMEM64--RIPK2	2	1	TMEM64	8846	chr8:91657339:-	RIPK2	20483	chr8:90775057:+	ONLY_REF_SPLICE	YES	41	130	0.07	0.02	0.0263	0.0131	TMEM64->chr8:91634223-91803860:-,transmembrane_protein_64,RIPK2->chr8:90769975-90803291:+,receptor_interacting_serine/threonine_kinase_2	HCC2279_LUNG	0.02	0.07	0.0394	TRUE	0	0	0	1	0	FALSE	ACH-000731
HCC2279_LUNG	AAK1--PSMB1	2	0	AAK1	3410	chr2:69870010:-	PSMB1	42261	chr6:170858201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	AAK1->AP2_associated_kinase_1,chr2:69688532-69901481:-,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	HCC2279_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	CMTM4--RP11-1M18.1	2	0	CMTM4	1368	chr16:66730243:-	RP11-1M18.1	15118	chrX:6639585:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,RP11-1M18.1->chrX:6585906-6639585:-	HCC2279_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	MAD1L1--PTTG1	2	0	MAD1L1	19401	chr7:2188787:-	PTTG1	43513	chr5:159849309:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,PTTG1->Oncogene{Bushman},chr5:159848829-159855748:+,pituitary_tumor-transforming_1	HCC2279_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	VPS13C--YWHAH	2	0	VPS13C	48152	chr15:62228796:-	YWHAH	98164	chr22:32352126:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0263	0	VPS13C->chr15:62144588-62352672:-,vacuolar_protein_sorting_13_homolog_C,YWHAH->chr22:32340447-32353590:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_eta	HCC2279_LUNG	1	1	0.0263	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	ZCCHC4--RP11-302F12.3	1	2	ZCCHC4	3354	chr4:25317022:+	RP11-302F12.3	18948	chr4:25610333:+	ONLY_REF_SPLICE	YES	19	0	0.14	1	0.0131	0.0263	ZCCHC4->chr4:25314407-25372005:+,zinc_finger_CCHC-type_containing_4,RP11-302F12.3->chr4:25610333-25621087:+	HCC2279_LUNG	0.14	1	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	APBB2--LIMCH1	1	1	APBB2	10480	chr4:41102656:-	LIMCH1	45938	chr4:41496553:+	ONLY_REF_SPLICE	YES	154	108	0.01	0.02	0.0131	0.0131	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1,Brain_-_Frontal_Cortex_(BA9)=1,Thyroid=1},APBB2->amyloid_beta_precursor_protein_binding_family_B_member_2,chr4:40812044-41218731:-,LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+	HCC2279_LUNG	0.01	0.02	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000731
HCC2279_LUNG	CRIM1--LCLAT1	1	1	CRIM1	11742	chr2:36706837:+	LCLAT1	43749	chr2:30862983:+	ONLY_REF_SPLICE	YES	796	36	0	0.05	0.0131	0.0131	CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),LCLAT1->chr2:30670092-30867091:+,lysocardiolipin_acyltransferase_1	HCC2279_LUNG	0	0.05	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000731
HCC2279_LUNG	CTC-786C10.1--GSE1	1	1	CTC-786C10.1	1532	chr16:85205413:+	GSE1	8143	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	7	1	0.22	0.0131	0.0131	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC2279_LUNG	0.22	1	0.0262	TRUE	5	1	0	10	0	FALSE	ACH-000731
HCC2279_LUNG	DESI1--XRCC6	1	1	DESI1	1345	chr22:42016756:-	XRCC6	16313	chr22:42032117:+	ONLY_REF_SPLICE	YES	360	1239	0.01	0	0.0131	0.0131	LOCAL_INVERSION:-:+:[23],DESI1->chr22:41994032-42017100:-,desumoylating_isopeptidase_1,XRCC6->Oncogene{Bushman},X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_6,chr22:42017123-42060044:+	HCC2279_LUNG	0	0.01	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000731
HCC2279_LUNG	FAM134B--EFHC1	1	1	FAM134B	3087	chr5:16572105:-	EFHC1	18502	chr6:52288744:+	ONLY_REF_SPLICE	YES	3	9	0.4	0.18	0.0131	0.0131	FAM134B->chr5:16473147-16617167:-,family_with_sequence_similarity_134_member_B,EFHC1->EF-hand_domain_containing_1,chr6:52285106-52387892:+	HCC2279_LUNG	0.18	0.4	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	HP1BP3--XRCC4	1	1	HP1BP3	5022	chr1:21103090:-	XRCC4	26936	chr5:82499371:+	ONLY_REF_SPLICE	NO	162	39	0.01	0.05	0.0131	0.0131	HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,XRCC4->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_4,chr5:82373317-82649606:+	HCC2279_LUNG	0.01	0.05	0.0262	FALSE	0	0	0	1	0	FALSE	ACH-000731
HCC2279_LUNG	LRP12--ATP6V0D2	1	1	LRP12	1206	chr8:105601047:-	ATP6V0D2	28153	chr8:87153679:+	ONLY_REF_SPLICE	YES	97	31	0.02	0.06	0.0131	0.0131	LRP12->LDL_receptor_related_protein_12,chr8:105501459-105601252:-,ATP6V0D2->ATPase_H+_transporting_V0_subunit_d2,chr8:86999552-87166457:+	HCC2279_LUNG	0.02	0.06	0.0262	TRUE	0	0	0	1	0	FALSE	ACH-000731
HCC2279_LUNG	RNF220--ERI3	1	1	RNF220	8059	chr1:44889811:+	ERI3	33059	chr1:44785416:-	ONLY_REF_SPLICE	YES	67	252	0.03	0.01	0.0131	0.0131	LOCAL_INVERSION:+:-:[49934],RNF220->Oncogene{Bushman},chr1:44870866-45117396:+,ring_finger_protein_220,ERI3->ERI1_exoribonuclease_family_member_3,chr1:44686742-44820932:-	HCC2279_LUNG	0.01	0.03	0.0262	FALSE	0	0	0	2	0	FALSE	ACH-000731
HCC2279_LUNG	SSBP1--MGAM	1	1	SSBP1	9443	chr7:141450184:+	MGAM	20665	chr7:141705329:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0.0131	SSBP1->chr7:141438121-141487722:+,single_stranded_DNA_binding_protein_1,MGAM->chr7:141607613-141806547:+,maltase-glucoamylase	HCC2279_LUNG	1	1	0.0262	TRUE	0	1	0	7	1	TRUE	ACH-000731
HCC2279_LUNG	STK3--VPS13B	1	1	STK3	11120	chr8:99837743:-	VPS13B	39422	chr8:100025988:+	ONLY_REF_SPLICE	NO	27	0	0.07	1	0.0131	0.0131	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Heart_-_Left_Ventricle=1},LOCAL_INVERSION:-:+:[70439],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast)	HCC2279_LUNG	0.07	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000731
HCC2279_LUNG	XKR9--LACTB2	1	1	XKR9	1174	chr8:71581773:+	LACTB2	20001	chr8:71556478:-	ONLY_REF_SPLICE	NO	1	164	0.67	0.01	0.0131	0.0131	LOCAL_INVERSION:+:-:[191],XKR9->XK_related_9,chr8:71581600-71702606:+,LACTB2->chr8:71547553-71581409:-,lactamase_beta_2	HCC2279_LUNG	0.01	0.67	0.0262	FALSE	0	11	0	8	7	FALSE	ACH-000731
NCIH2347_LUNG	TIMM23B--LINC00843	114	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1201	0.1867	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2347_LUNG	1	1	1.3068	TRUE	508	994	45	981	0	FALSE	ACH-000875
NCIH2347_LUNG	TIMM23--RP11-464F9.1	72	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	152	2	0.33	0.97	0.7074	0.0295	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2347_LUNG	0.33	0.97	0.7369	TRUE	519	3926	326	965	0	FALSE	ACH-000875
NCIH2347_LUNG	ZNF654--HMGB2	41	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4028	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH2347_LUNG	1	1	0.4028	TRUE	0	0	0	518	0	FALSE	ACH-000875
NCIH2347_LUNG	MT-ND6--MT-TE	25	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2456	0.0393	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2347_LUNG	0.97	1	0.2849	FALSE	499	1288	110	792	0	FALSE	ACH-000875
NCIH2347_LUNG	MIPEPP3--ABHD12	24	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2358	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	NCIH2347_LUNG	1	1	0.2358	TRUE	64	202	9	44	0	FALSE	ACH-000875
NCIH2347_LUNG	MT-TA--MT-TC	23	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.226	0.0098	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2347_LUNG	1	1	0.2358	FALSE	462	80	0	856	0	FALSE	ACH-000875
NCIH2347_LUNG	MT-ND6--MT-TE	22	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2162	0.0393	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2347_LUNG	0.96	1	0.2555	FALSE	499	1288	110	792	0	FALSE	ACH-000875
NCIH2347_LUNG	CNTLN--RP11-132E11.2	18	3	CNTLN	2533	chr9:17143374:+	RP11-132E11.2	42578	chr9:17112271:+	ONLY_REF_SPLICE	YES	26	0	0.45	1	0.1769	0.0295	LOCAL_REARRANGEMENT:+:[22167],CNTLN->centlein,chr9:17134980-17503921:+,RP11-132E11.2->chr9:17048917-17112813:+	NCIH2347_LUNG	0.45	1	0.2064	TRUE	0	1	0	1	1	TRUE	ACH-000875
NCIH2347_LUNG	MT-ND6--MT-TE	14	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1376	0.1081	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2347_LUNG	1	1	0.2457	FALSE	499	1288	110	792	0	FALSE	ACH-000875
NCIH2347_LUNG	RP11-96H19.1--RP11-446N19.1	13	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.1277	0.0393	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2347_LUNG	0.89	1	0.167	FALSE	515	4851	409	746	0	FALSE	ACH-000875
NCIH2347_LUNG	C15orf57--CBX3	11	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	8	46	0.68	0.27	0.1081	0.059	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2347_LUNG	0.27	0.68	0.1671	TRUE	267	562	48	632	0	FALSE	ACH-000875
NCIH2347_LUNG	MT-TA--MT-TC	12	0	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1179	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2347_LUNG	1	1	0.1179	FALSE	462	80	0	856	0	FALSE	ACH-000875
NCIH2347_LUNG	MT-ND6--MT-TE	4	30	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0.2948	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2347_LUNG	1	1	0.3341	FALSE	499	1288	110	792	0	FALSE	ACH-000875
NCIH2347_LUNG	MT-ND6--MT-TE	8	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0786	0.1376	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2347_LUNG	0.96	1	0.2162	FALSE	499	1288	110	792	0	FALSE	ACH-000875
NCIH2347_LUNG	RP11-114H23.1--RP11-114H23.2	10	6	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0983	0.059	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH2347_LUNG	0.94	1	0.1573	FALSE	81	155	12	160	0	FALSE	ACH-000875
NCIH2347_LUNG	C15orf57--CBX3	9	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	8	45	0.69	0.29	0.0884	0.0884	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH2347_LUNG	0.29	0.69	0.1768	TRUE	267	562	48	632	0	FALSE	ACH-000875
NCIH2347_LUNG	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1081	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2347_LUNG	1	1	0.1081	TRUE	0	0	0	434	0	FALSE	ACH-000875
NCIH2347_LUNG	MT-ND6--MT-TE	3	30	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0295	0.2948	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2347_LUNG	0.97	1	0.3243	FALSE	499	1288	110	792	0	FALSE	ACH-000875
NCIH2347_LUNG	RP11-96H19.1--RP11-446N19.1	8	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	1	0.87	0.93	0.0786	0.0491	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2347_LUNG	0.87	0.93	0.1277	FALSE	407	2205	196	549	0	FALSE	ACH-000875
NCIH2347_LUNG	MT-ND6--MT-TE	4	15	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0.1474	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2347_LUNG	1	1	0.1867	FALSE	499	1288	110	792	0	FALSE	ACH-000875
NCIH2347_LUNG	RCC1--RHOA	7	0	RCC1	2175	chr1:28834672:+	RHOA	22152	chr3:49413024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0688	0	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Testis=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	NCIH2347_LUNG	1	1	0.0688	TRUE	0	1	0	6	0	TRUE	ACH-000875
NCIH2347_LUNG	RP11-114H23.1--RP11-114H23.2	6	4	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12431	chr12:76088727:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.059	0.0393	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH2347_LUNG	0.91	1	0.0983	FALSE	81	155	12	160	0	FALSE	ACH-000875
NCIH2347_LUNG	KRT7--TUBA1C	5	0	KRT7	1809	chr12:52627112:+	TUBA1C	26832	chr12:49666110:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0491	0	KRT7->chr12:52626304-52645970:+,keratin_7,TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c	NCIH2347_LUNG	1	1	0.0491	TRUE	0	0	0	4	0	TRUE	ACH-000875
NCIH2347_LUNG	MT-ND1--MT-TL1	4	3	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0.0295	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH2347_LUNG	1	1	0.0688	FALSE	210	95	5	49	0	FALSE	ACH-000875
NCIH2347_LUNG	AP000350.4--ACTG1	4	0	AP000350.4	3718	chr22:24236667:-	ACTG1	9817	chr17:79479156:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	AP000350.4->chr22:24236613-24241117:-,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH2347_LUNG	1	1	0.0393	TRUE	0	0	0	1	0	TRUE	ACH-000875
NCIH2347_LUNG	EIF1--RPL5	4	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	NCIH2347_LUNG	1	1	0.0393	TRUE	0	0	0	39	0	FALSE	ACH-000875
NCIH2347_LUNG	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH2347_LUNG	1	1	0.0393	TRUE	0	0	0	434	0	FALSE	ACH-000875
NCIH2347_LUNG	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0.0197	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2347_LUNG	1	1	0.0492	FALSE	462	80	0	856	0	FALSE	ACH-000875
NCIH2347_LUNG	RP11-114H23.1--RP11-114H23.2	2	6	RP11-114H23.1	2326	chr12:76171280:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	NO	2	0	0.8	1	0.0197	0.059	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NCIH2347_LUNG	0.8	1	0.0787	FALSE	5	9	0	20	0	FALSE	ACH-000875
NCIH2347_LUNG	UBAP1--UBE2D2	3	2	UBAP1	1236	chr9:34179238:+	UBE2D2	18243	chr5:138979957:+	ONLY_REF_SPLICE	YES	87	69	0.05	0.07	0.0295	0.0197	UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	NCIH2347_LUNG	0.05	0.07	0.0492	TRUE	1	0	0	3	0	FALSE	ACH-000875
NCIH2347_LUNG	RP4-565E6.1--HYDIN	3	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0295	0.0098	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH2347_LUNG	0.8	1	0.0393	TRUE	456	1387	91	133	0	FALSE	ACH-000875
NCIH2347_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2347_LUNG	1	1	0.0295	FALSE	499	1288	110	792	0	FALSE	ACH-000875
NCIH2347_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2347_LUNG	1	1	0.0295	FALSE	499	1288	110	792	0	FALSE	ACH-000875
NCIH2347_LUNG	MT-TA--MT-TC	3	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2347_LUNG	1	1	0.0295	FALSE	462	80	0	856	0	FALSE	ACH-000875
NCIH2347_LUNG	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	1	1	0.86	0.0098	0.0491	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2347_LUNG	0.86	1	0.0589	FALSE	192	492	57	212	0	FALSE	ACH-000875
NCIH2347_LUNG	CCNB1--PAFAH1B1	2	0	CCNB1	5804	chr5:68471364:+	PAFAH1B1	26445	chr17:2583458:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	CCNB1->Oncogene{Bushman},chr5:68462837-68474072:+,cyclin_B1,PAFAH1B1->chr17:2496504-2588909:+,platelet_activating_factor_acetylhydrolase_1b_regulatory_subunit_1	NCIH2347_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000875
NCIH2347_LUNG	JMJD1C--RP11-29G8.3	2	0	JMJD1C	2633	chr10:65140078:-	RP11-29G8.3	36225	chr13:76134889:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	JMJD1C->chr10:64926981-65225722:-,jumonji_domain_containing_1C,RP11-29G8.3->chr13:76123909-76381256:+	NCIH2347_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000875
NCIH2347_LUNG	MAFK--ACTB	2	0	MAFK	1185	chr7:1570534:+	ACTB	15096	chr7:5569294:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3]},MAFK->Oncogene{Bushman},chr7:1570350-1582679:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_K,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NCIH2347_LUNG	1	1	0.0197	TRUE	2	1	0	1	0	FALSE	ACH-000875
NCIH2347_LUNG	NCEH1--ECT2	2	0	NCEH1	1372	chr3:172428637:-	ECT2	35027	chr3:172533394:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	LOCAL_INVERSION:-:+:[39464],NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,ECT2->Oncogene{Bushman},chr3:172468472-172539264:+,epithelial_cell_transforming_2	NCIH2347_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000875
NCIH2347_LUNG	RBM10--PHF16	2	0	RBM10	2759	chrX:47006897:+	PHF16	20053	chrX:46844285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	LOCAL_REARRANGEMENT:+:[83627],RBM10->ArcherDX_panel,FoundationOne_panel,RNA_binding_motif_protein_10,chrX:47004268-47046212:+,PHF16->chrX:46771711-46920641:+	NCIH2347_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000875
NCIH2347_LUNG	VEZT--WIPI2	2	0	VEZT	1141	chr12:95611662:+	WIPI2	44771	chr7:5267735:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	VEZT->chr12:95611522-95696566:+,vezatin,_adherens_junctions_transmembrane_protein,WIPI2->WD_repeat_domain,_phosphoinositide_interacting_2,chr7:5229819-5273457:+	NCIH2347_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000875
NCIH2347_LUNG	GBX1--RHEB	1	1	GBX1	1130	chr7:150871703:-	RHEB	12424	chr7:151188100:-	ONLY_REF_SPLICE	YES	4	584	0.33	0	0.0098	0.0098	GBX1->chr7:150845676-150871832:-,gastrulation_brain_homeobox_1,RHEB->Ras_homolog_enriched_in_brain,chr7:151163098-151217206:-	NCIH2347_LUNG	0	0.33	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000875
NCIH2347_LUNG	TES--CAV1	1	1	TES	1242	chr7:115850788:+	CAV1	16985	chr7:116199000:+	ONLY_REF_SPLICE	NO	271	1165	0.01	0	0.0098	0.0098	{Klijn_CCL:Lung=1,Head-Neck=1},TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	NCIH2347_LUNG	0	0.01	0.0196	FALSE	1	1	1	3	0	FALSE	ACH-000875
NCIH727_LUNG	PRSS3P1--KRT8	330	0	PRSS3P1	3295	chr7:142470637:+	KRT8	17295	chr12:53293794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.9838	0	PRSS3P1->chr7:142468264-142471794:+,protease,_serine_3_pseudogene_1,KRT8->chr12:53290977-53343738:-,keratin_8	NCIH727_LUNG	1	1	2.9838	TRUE	1	0	0	3	0	TRUE	ACH-000775
NCIH727_LUNG	TIMM23B--LINC00843	143	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.293	0.217	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH727_LUNG	0.99	1	1.51	TRUE	508	994	45	981	0	FALSE	ACH-000775
NCIH727_LUNG	ASAP1--FAM19A5	138	21	ASAP1	11022	chr8:131249168:-	FAM19A5	50160	chr22:49042409:+	ONLY_REF_SPLICE	YES	30	19	0.84	0.89	1.2478	0.1899	{Klijn_CCL:Brain=1,Lung=1},ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM19A5->chr22:48885272-49246724:+,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A5	NCIH727_LUNG	0.84	0.89	1.4377	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	FBRSL1--STX2	102	21	FBRSL1	4632	chr12:133084936:+	STX2	28871	chr12:131311812:-	ONLY_REF_SPLICE	YES	82	21	0.6	0.85	0.9223	0.1899	{Klijn_CCL:Lung=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,STX2->chr12:131274145-131323811:-,syntaxin_2	NCIH727_LUNG	0.6	0.85	1.1122	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	RP11-507B12.1--RP11-507B12.2	93	0	RP11-507B12.1	1057	chr15:62007314:-	RP11-507B12.2	6395	chr15:61927688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8409	0	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	NCIH727_LUNG	1	1	0.8409	FALSE	0	0	0	4	0	FALSE	ACH-000775
NCIH727_LUNG	SPIDR--ZFAT	86	15	SPIDR	13881	chr8:48320523:+	ZFAT	66520	chr8:135521992:-	ONLY_REF_SPLICE	YES	43	13	0.7	0.89	0.7776	0.1356	SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,ZFAT->chr8:135490031-135725292:-,zinc_finger_and_AT-hook_domain_containing	NCIH727_LUNG	0.7	0.89	0.9132	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	MT-ND6--MT-TE	83	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7505	0.0362	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH727_LUNG	1	1	0.7867	FALSE	499	1288	110	792	0	FALSE	ACH-000775
NCIH727_LUNG	TIMM23--RP11-464F9.1	80	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	144	5	0.37	0.94	0.7234	0.0452	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH727_LUNG	0.37	0.94	0.7686	TRUE	519	3926	326	965	0	FALSE	ACH-000775
NCIH727_LUNG	FMNL2--UPP2	65	13	FMNL2	1484	chr2:153192234:+	UPP2	47198	chr2:158991260:+	ONLY_REF_SPLICE	YES	18	0	0.81	1	0.5877	0.1175	FMNL2->chr2:153191751-153506348:+,formin_like_2,UPP2->chr2:158733214-158992666:+,uridine_phosphorylase_2	NCIH727_LUNG	0.81	1	0.7052	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	7	188	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	17	0	0.92	1	0.0633	1.6999	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0.92	1	1.7632	FALSE	344	826	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	3	187	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	10	0	0.95	1	0.0271	1.6908	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0.95	1	1.7179	FALSE	344	826	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	3	186	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	9	0	0.95	1	0.0271	1.6818	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0.95	1	1.7089	FALSE	344	826	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	3	180	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	5	0	0.97	1	0.0271	1.6276	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0.97	1	1.6547	FALSE	344	826	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	SSH2--MICAL3	41	10	SSH2	1339	chr17:28256956:-	MICAL3	38222	chr22:18389652:-	ONLY_REF_SPLICE	YES	35	11	0.59	0.82	0.3707	0.0904	SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2,MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3	NCIH727_LUNG	0.59	0.82	0.4611	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	ARHGAP5--AKAP6	37	17	ARHGAP5	9216	chr14:32586493:+	AKAP6	41154	chr14:33147517:+	ONLY_REF_SPLICE	YES	99	5	0.35	0.92	0.3346	0.1537	{Klijn_CCL:Lung=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	NCIH727_LUNG	0.35	0.92	0.4883	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	PPP1R8--SMAP2	35	18	PPP1R8	2650	chr1:28159327:+	SMAP2	13881	chr1:40827972:+	ONLY_REF_SPLICE	YES	63	0	0.46	1	0.3165	0.1628	PPP1R8->chr1:28157289-28178187:+,protein_phosphatase_1_regulatory_subunit_8,SMAP2->chr1:40810522-40888998:+,small_ArfGAP2	NCIH727_LUNG	0.46	1	0.4793	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	6	130	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	0	0.98	1	0.0543	1.1755	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0.98	1	1.2298	FALSE	344	821	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	4	128	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	5	1	0.96	0.99	0.0362	1.1574	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0.96	0.99	1.1936	FALSE	344	826	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	RP4-565E6.1--HYDIN	32	14	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.98	0.2893	0.1266	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH727_LUNG	0.98	1	0.4159	TRUE	456	1387	91	133	0	FALSE	ACH-000775
NCIH727_LUNG	OR51S1--TP53I11	35	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3165	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH727_LUNG	1	1	0.3165	TRUE	402	216	10	229	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	3	121	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	37	1	0.77	0.99	0.0271	1.0941	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0.77	0.99	1.1212	FALSE	344	827	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	HPN--ASIC2	28	18	HPN	2191	chr19:35532776:+	ASIC2	20125	chr17:31439085:-	ONLY_REF_SPLICE	YES	146	40	0.24	0.53	0.2532	0.1628	HPN->chr19:35531410-35557475:+,hepsin,ASIC2->acid_sensing_ion_channel_subunit_2,chr17:31340105-32501983:-	NCIH727_LUNG	0.24	0.53	0.416	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	RP11-507B12.1--RP11-507B12.2	31	0	RP11-507B12.1	1057	chr15:62007314:-	RP11-507B12.2	7470	chr15:61882202:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2803	0	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	NCIH727_LUNG	1	1	0.2803	FALSE	0	23	0	4	0	FALSE	ACH-000775
NCIH727_LUNG	ST3GAL3--SSBP3	27	11	ST3GAL3	11381	chr1:44303983:+	SSBP3	29109	chr1:54870603:-	ONLY_REF_SPLICE	YES	20	41	0.66	0.48	0.2441	0.0995	{Klijn_CCL:Lung=1},ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,SSBP3->Oncogene{Bushman},chr1:54691105-54879152:-,single_stranded_DNA_binding_protein_3	NCIH727_LUNG	0.48	0.66	0.3436	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	MT-ND6--MT-TE	28	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2532	0.0362	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH727_LUNG	1	1	0.2894	FALSE	499	1288	110	792	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND6--MT-TE	22	20	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.89	1	0.1989	0.1808	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH727_LUNG	0.89	1	0.3797	FALSE	499	1288	110	792	0	FALSE	ACH-000775
NCIH727_LUNG	MT-TA--MT-TC	27	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2441	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH727_LUNG	1	1	0.2441	FALSE	462	80	0	856	0	FALSE	ACH-000775
NCIH727_LUNG	RP11-123O10.4--GRIP1	24	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.217	0.0633	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH727_LUNG	1	1	0.2803	FALSE	416	2512	207	587	0	FALSE	ACH-000775
NCIH727_LUNG	CCDC91--RP11-993B23.3	25	1	CCDC91	5569	chr12:28343574:+	RP11-993B23.3	34818	chr12:28111452:+	INCL_NON_REF_SPLICE	YES	96	0	0.21	1	0.226	0.009	CCDC91->chr12:28286182-28732883:+,coiled-coil_domain_containing_91,RP11-993B23.3->chr12:28111450-28122746:+	NCIH727_LUNG	0.21	1	0.235	TRUE	0	0	0	2	0	TRUE	ACH-000775
NCIH727_LUNG	SPECC1L--DIP2B	20	9	SPECC1L	1198	chr22:24666983:+	DIP2B	61935	chr12:51126205:+	INCL_NON_REF_SPLICE	YES	27	27	0.52	0.52	0.1808	0.0814	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B	NCIH727_LUNG	0.52	0.52	0.2622	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	RAB8B--TPM1	19	5	RAB8B	1280	chr15:63481947:+	TPM1	25107	chr15:63349184:+	ONLY_REF_SPLICE	YES	20	2138	0.55	0.01	0.1718	0.0452	RAB8B->RAB8B,_member_RAS_oncogene_family,chr15:63481668-63559981:+,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha)	NCIH727_LUNG	0.01	0.55	0.217	TRUE	1	0	0	3	0	FALSE	ACH-000775
NCIH727_LUNG	TNS3--PKD1L1	18	9	TNS3	35383	chr7:47336680:-	PKD1L1	82264	chr7:47886669:-	ONLY_REF_SPLICE	YES	149	0	0.15	1	0.1628	0.0814	{Klijn_CCL:Lung=2},TNS3->chr7:47314752-47622156:-,tensin_3,PKD1L1->chr7:47814250-47988088:-,polycystin_1_like_1,_transient_receptor_potential_channel_interacting	NCIH727_LUNG	0.15	1	0.2442	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	ARHGAP5--AKAP6	17	10	ARHGAP5	8068	chr14:32563592:+	AKAP6	41154	chr14:33147517:+	ONLY_REF_SPLICE	YES	83	5	0.25	0.84	0.1537	0.0904	{Klijn_CCL:Lung=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	NCIH727_LUNG	0.25	0.84	0.2441	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	CPE--TLR3	17	7	CPE	13030	chr4:166414422:+	TLR3	20056	chr4:186997767:+	ONLY_REF_SPLICE	YES	2339	0	0.01	1	0.1537	0.0633	CPE->carboxypeptidase_E,chr4:166282346-166419472:+,TLR3->chr4:186990306-187009223:+,toll_like_receptor_3	NCIH727_LUNG	0.01	1	0.217	TRUE	0	0	0	1	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	4	55	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	3	1	0.95	0.98	0.0362	0.4973	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0.95	0.98	0.5335	FALSE	344	821	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	SIK3--PCSK7	17	2	SIK3	1295	chr11:116968859:-	PCSK7	48642	chr11:117090474:-	ONLY_REF_SPLICE	YES	11	71	0.63	0.21	0.1537	0.0181	{Klijn_CCL:Lung=1},SIK3->Oncogene{Bushman},SIK_family_kinase_3,chr11:116714118-116969153:-,PCSK7->Oncogene{Bushman},chr11:117075053-117103241:-,proprotein_convertase_subtilisin/kexin_type_7	NCIH727_LUNG	0.21	0.63	0.1718	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	MT-TA--MT-TC	17	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1537	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH727_LUNG	1	1	0.1537	FALSE	462	80	0	856	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND6--MT-TE	9	31	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	5	0	0.89	1	0.0814	0.2803	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH727_LUNG	0.89	1	0.3617	FALSE	499	1288	110	792	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	5	44	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	391	0	0.11	1	0.0452	0.3978	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0.11	1	0.443	FALSE	344	827	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	8	29	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	16	0	0.7	1	0.0723	0.2622	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0.7	1	0.3345	FALSE	344	826	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ATP6--MT-CO2	14	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	39	4	0.29	0.8	0.1266	0.0181	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH727_LUNG	0.29	0.8	0.1447	FALSE	59	21	0	114	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	3	44	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0.3978	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	1	1	0.4249	FALSE	344	821	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	3	43	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	17	0	0.73	1	0.0271	0.3888	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0.73	1	0.4159	FALSE	344	826	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	TTLL7--GNG5	13	2	TTLL7	16182	chr1:84383287:-	GNG5	41581	chr1:84967653:-	ONLY_REF_SPLICE	YES	12	492	0.56	0.03	0.1175	0.0181	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Lung=1},TTLL7->chr1:84330711-84464833:-,tubulin_tyrosine_ligase_like_7,GNG5->G_protein_subunit_gamma_5,chr1:84964008-84972248:-	NCIH727_LUNG	0.03	0.56	0.1356	TRUE	0	0	0	1	0	FALSE	ACH-000775
NCIH727_LUNG	SPECC1L--DIP2B	12	5	SPECC1L	1166	chr22:24666951:+	DIP2B	63050	chr12:51127918:+	ONLY_REF_SPLICE	YES	23	30	0.42	0.36	0.1085	0.0452	SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like,DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B	NCIH727_LUNG	0.36	0.42	0.1537	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	5	30	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	454	0	0.07	1	0.0452	0.2713	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0.07	1	0.3165	FALSE	344	827	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	6	24	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	2	1	0.94	0.97	0.0543	0.217	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0.94	0.97	0.2713	FALSE	344	821	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND6--MT-TE	6	23	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0.208	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH727_LUNG	1	1	0.2623	FALSE	499	1288	110	792	0	FALSE	ACH-000775
NCIH727_LUNG	NRIP1--AF127936.7	11	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.81	1	0.0995	0.0181	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH727_LUNG	0.81	1	0.1176	FALSE	292	1546	117	613	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND6--MT-TE	3	32	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.92	1	0.0271	0.2893	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH727_LUNG	0.92	1	0.3164	FALSE	499	1288	110	792	0	FALSE	ACH-000775
NCIH727_LUNG	PPP1R8--SMAP2	8	8	PPP1R8	2650	chr1:28159327:+	SMAP2	18086	chr1:40872408:+	ONLY_REF_SPLICE	YES	63	47	0.2	0.25	0.0723	0.0723	PPP1R8->chr1:28157289-28178187:+,protein_phosphatase_1_regulatory_subunit_8,SMAP2->chr1:40810522-40888998:+,small_ArfGAP2	NCIH727_LUNG	0.2	0.25	0.1446	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	MT-ND6--MT-TE	4	23	MT-ND6	1199	chrM:14475:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	5	0	0.84	1	0.0362	0.208	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH727_LUNG	0.84	1	0.2442	FALSE	499	1288	110	792	0	FALSE	ACH-000775
NCIH727_LUNG	ST3GAL3--SSBP3	7	11	ST3GAL3	12555	chr1:44323980:+	SSBP3	29109	chr1:54870603:-	ONLY_REF_SPLICE	YES	14	41	0.56	0.31	0.0633	0.0995	{Klijn_CCL:Lung=1},ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,SSBP3->Oncogene{Bushman},chr1:54691105-54879152:-,single_stranded_DNA_binding_protein_3	NCIH727_LUNG	0.31	0.56	0.1628	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	HSP90AB1--MT-RNR2	9	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0814	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH727_LUNG	1	1	0.0814	FALSE	13	9	0	364	0	FALSE	ACH-000775
NCIH727_LUNG	LINC01014--KCNMB2	9	0	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0814	0	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH727_LUNG	1	1	0.0814	FALSE	12	33	18	33	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	3	24	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	13	0	0.68	1	0.0271	0.217	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0.68	1	0.2441	FALSE	344	826	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	6	12	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	26	0	0.41	1	0.0543	0.1085	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0.41	1	0.1628	FALSE	344	827	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	C15orf57--CBX3	8	3	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	22	8	0.33	0.58	0.0723	0.0271	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH727_LUNG	0.33	0.58	0.0994	TRUE	267	562	48	632	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ATP6--MT-CO1	8	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	7174	14635	0	0	0.0723	0.009	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH727_LUNG	0	0	0.0813	FALSE	183	104	9	328	0	FALSE	ACH-000775
NCIH727_LUNG	RP11-680G10.1--GSE1	8	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	68	1	0.12	0.0723	0.009	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH727_LUNG	0.12	1	0.0813	TRUE	465	1949	224	605	0	FALSE	ACH-000775
NCIH727_LUNG	RP11-96H19.1--RP11-446N19.1	7	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0633	0.0452	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH727_LUNG	1	1	0.1085	FALSE	515	4851	409	746	0	FALSE	ACH-000775
NCIH727_LUNG	LINC01014--KCNMB2	8	0	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0723	0	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	NCIH727_LUNG	1	1	0.0723	FALSE	11	60	26	37	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ATP8	8	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0723	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH727_LUNG	1	1	0.0723	FALSE	230	198	14	283	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ATP8	8	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0723	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH727_LUNG	1	1	0.0723	FALSE	231	205	14	283	0	FALSE	ACH-000775
NCIH727_LUNG	FTH1--ACTG1	7	3	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	5007	3	0	0.77	0.0633	0.0271	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH727_LUNG	0	0.77	0.0904	FALSE	0	0	0	64	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND1--MT-TL1	3	19	MT-ND1	1094	chrM:3400:+	MT-TL1	4988	chrM:3261:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0271	0.1718	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH727_LUNG	0.96	1	0.1989	FALSE	210	95	5	49	0	FALSE	ACH-000775
NCIH727_LUNG	MICAL3--SSH2	7	2	MICAL3	2388	chr22:18484159:-	SSH2	70284	chr17:28120955:-	ONLY_REF_SPLICE	YES	9	4	0.5	0.69	0.0633	0.0181	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2	NCIH727_LUNG	0.5	0.69	0.0814	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ATP8	7	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10332	4	0	0.67	0.0633	0.009	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH727_LUNG	0	0.67	0.0723	FALSE	231	217	16	283	0	FALSE	ACH-000775
NCIH727_LUNG	ARHGAP5--AKAP6	7	0	ARHGAP5	2322	chr14:32546641:+	AKAP6	41154	chr14:33147517:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0633	0	{Klijn_CCL:Lung=1},ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+,AKAP6->A-kinase_anchoring_protein_6,chr14:32798479-33300567:+	NCIH727_LUNG	1	1	0.0633	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	MT-ATP6--MT-CO2	6	3	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	39	2	0.19	0.82	0.0543	0.0271	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH727_LUNG	0.19	0.82	0.0814	FALSE	59	21	0	114	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	3	15	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0.1356	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	1	1	0.1627	FALSE	344	821	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	RP11-87H9.2--LINGO2	6	2	RP11-87H9.2	5208	chr9:69084959:+	LINGO2	12603	chr9:28080976:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0.0181	RP11-87H9.2->chr9:69065655-69084989:+,LINGO2->chr9:27948076-28670283:-,leucine_rich_repeat_and_Ig_domain_containing_2	NCIH727_LUNG	1	1	0.0724	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	SCARB1--UBC	6	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	205	30	0.03	0.19	0.0543	0.009	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH727_LUNG	0.03	0.19	0.0633	TRUE	55	66	6	101	0	FALSE	ACH-000775
NCIH727_LUNG	FMNL2--CCDC148-AS1	6	0	FMNL2	1484	chr2:153192234:+	CCDC148-AS1	38869	chr2:159063996:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0543	0	FMNL2->chr2:153191751-153506348:+,formin_like_2,CCDC148-AS1->CCDC148_antisense_RNA_1,chr2:159023162-159092681:+	NCIH727_LUNG	1	1	0.0543	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	6	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	1	1	0.0543	FALSE	344	821	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	6	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	1	1	0.0543	FALSE	344	821	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	3	12	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	17	0	0.47	1	0.0271	0.1085	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0.47	1	0.1356	FALSE	344	826	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	REV3L--RPL28	6	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0543	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH727_LUNG	1	1	0.0543	TRUE	22	156	2	142	0	FALSE	ACH-000775
NCIH727_LUNG	RP11-507B12.1--RP11-507B12.2	6	0	RP11-507B12.1	1057	chr15:62007314:-	RP11-507B12.2	8558	chr15:61799439:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0543	0	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	NCIH727_LUNG	1	1	0.0543	FALSE	0	11	0	4	0	FALSE	ACH-000775
NCIH727_LUNG	C15orf57--CBX3	5	1	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	20	8	0.23	0.43	0.0452	0.009	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH727_LUNG	0.23	0.43	0.0542	TRUE	267	562	48	632	0	FALSE	ACH-000775
NCIH727_LUNG	SAMD5--SASH1	5	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0452	0.009	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NCIH727_LUNG	0.67	1	0.0542	TRUE	53	396	64	110	0	FALSE	ACH-000775
NCIH727_LUNG	CTD-2337A12.1--CAST	5	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0452	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH727_LUNG	1	1	0.0452	TRUE	347	1186	183	220	0	FALSE	ACH-000775
NCIH727_LUNG	FBRSL1--STX2	1	16	FBRSL1	4632	chr12:133084936:+	STX2	29946	chr12:131306333:-	ONLY_REF_SPLICE	NO	82	35	0.17	0.33	0.009	0.1447	{Klijn_CCL:Lung=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,STX2->chr12:131274145-131323811:-,syntaxin_2	NCIH727_LUNG	0.17	0.33	0.1537	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH727_LUNG	1	1	0.0452	FALSE	13	9	0	364	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH727_LUNG	1	1	0.0452	FALSE	499	1288	110	792	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0452	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH727_LUNG	1	1	0.0452	FALSE	499	1288	110	792	0	FALSE	ACH-000775
NCIH727_LUNG	FTH1--ACTG1	4	3	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	5074	3	0	0.7	0.0362	0.0271	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH727_LUNG	0	0.7	0.0633	FALSE	0	0	0	64	0	FALSE	ACH-000775
NCIH727_LUNG	NRIP1--AF127936.7	4	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.58	1	0.0362	0.0271	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH727_LUNG	0.58	1	0.0633	FALSE	125	705	46	456	0	FALSE	ACH-000775
NCIH727_LUNG	RP11-96H19.1--RP11-446N19.1	3	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0.0633	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH727_LUNG	1	1	0.0904	FALSE	407	2205	196	549	0	FALSE	ACH-000775
NCIH727_LUNG	ASAP1--FAM19A5	2	10	ASAP1	7774	chr8:131370263:-	FAM19A5	50160	chr22:49042409:+	ONLY_REF_SPLICE	YES	35	19	0.26	0.39	0.0181	0.0904	{Klijn_CCL:Brain=1,Lung=1},ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,FAM19A5->chr22:48885272-49246724:+,family_with_sequence_similarity_19_(chemokine_(C-C_motif)-like),_member_A5	NCIH727_LUNG	0.26	0.39	0.1085	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	DTD1--POLR3F	4	2	DTD1	1223	chr20:18568759:+	POLR3F	18886	chr20:18460682:+	ONLY_REF_SPLICE	YES	59	42	0.09	0.12	0.0362	0.0181	DTD1->D-tyrosyl-tRNA_deacylase_1,chr20:18568537-18744561:+,POLR3F->chr20:18447771-18465287:+,polymerase_(RNA)_III_subunit_F	NCIH727_LUNG	0.09	0.12	0.0543	TRUE	0	0	0	1	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ATP6--MT-CO2	4	2	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	39	2	0.13	0.75	0.0362	0.0181	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH727_LUNG	0.13	0.75	0.0543	FALSE	59	21	0	114	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	10490	0	0	1	0.0362	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH727_LUNG	0	1	0.0543	FALSE	231	217	16	283	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND5--MT-ND6	3	6	MT-ND5	2761	chrM:14097:+	MT-ND6	6169	chrM:14317:-	INCL_NON_REF_SPLICE	YES	0	3742	1	0	0.0271	0.0543	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH727_LUNG	0	1	0.0814	FALSE	26	124	4	93	0	FALSE	ACH-000775
NCIH727_LUNG	SEC14L1--C19orf12	4	2	SEC14L1	11207	chr17:75139741:+	C19orf12	38464	chr19:30199330:-	ONLY_REF_SPLICE	YES	41	40	0.13	0.13	0.0362	0.0181	SEC14L1->SEC14_like_lipid_binding_1,chr17:75082798-75213179:+,C19orf12->chr19:30191721-30206364:-,chromosome_19_open_reading_frame_12	NCIH727_LUNG	0.13	0.13	0.0543	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	MT-ATP6--MT-CO2	4	1	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	23	2	0.18	0.71	0.0362	0.009	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH727_LUNG	0.18	0.71	0.0452	FALSE	59	21	0	114	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND1--MT-RNR2	3	5	MT-ND1	1861	chrM:4167:+	MT-RNR2	5546	chrM:2260:+	INCL_NON_REF_SPLICE	YES	2	3848	0.8	0	0.0271	0.0452	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH727_LUNG	0	0.8	0.0723	FALSE	120	26	5	87	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND1--MT-RNR2	3	5	MT-ND1	1492	chrM:3798:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	32	0	0.2	1	0.0271	0.0452	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH727_LUNG	0.2	1	0.0723	FALSE	114	26	4	85	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	3	5	MT-ND4	1008	chrM:10767:+	MT-ND4L	5567	chrM:10658:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0271	0.0452	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	1	1	0.0723	FALSE	344	821	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	PRSS3P1--KRT8	4	1	PRSS3P1	3324	chr7:142470666:+	KRT8	17324	chr12:53293765:-	INCL_NON_REF_SPLICE	YES	70	4856	0.07	0	0.0362	0.009	PRSS3P1->chr7:142468264-142471794:+,protease,_serine_3_pseudogene_1,KRT8->chr12:53290977-53343738:-,keratin_8	NCIH727_LUNG	0	0.07	0.0452	FALSE	1	0	0	3	0	FALSE	ACH-000775
NCIH727_LUNG	VGF--MT-ND4L	4	1	VGF	1176	chr7:100808699:-	MT-ND4L	7087	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1777	0	0	1	0.0362	0.009	VGF->Oncogene{Bushman},VGF_nerve_growth_factor_inducible,chr7:100805790-100808874:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0	1	0.0452	FALSE	0	0	0	4	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH727_LUNG	1	1	0.0362	FALSE	231	217	16	283	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	1	1	0.0362	FALSE	344	821	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND5--MT-ND6	3	4	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	0	3691	1	0	0.0271	0.0362	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	NCIH727_LUNG	0	1	0.0633	FALSE	26	124	4	93	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH727_LUNG	1	1	0.0362	FALSE	499	1288	110	792	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH727_LUNG	1	1	0.0362	FALSE	499	1288	110	792	0	FALSE	ACH-000775
NCIH727_LUNG	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH727_LUNG	1	1	0.0362	FALSE	462	80	0	856	0	FALSE	ACH-000775
NCIH727_LUNG	NRG1--NRG1-IT2	4	0	NRG1	2344	chr8:31498245:+	NRG1-IT2	31143	chr8:32144617:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	NRG1->chr8:31496902-32622548:+,neuregulin_1,NRG1-IT2->chr8:32028898-32145082:+	NCIH727_LUNG	1	1	0.0362	TRUE	0	2	0	3	2	TRUE	ACH-000775
NCIH727_LUNG	MT-ND1--MT-RNR2	3	3	MT-ND1	1235	chrM:3541:+	MT-RNR2	5565	chrM:2279:+	INCL_NON_REF_SPLICE	YES	7	3919	0.46	0	0.0271	0.0271	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH727_LUNG	0	0.46	0.0542	FALSE	120	26	5	87	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	10444	724	0	0.01	0.0271	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH727_LUNG	0	0.01	0.0452	FALSE	231	217	16	283	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	2288	chrM:12047:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	YES	14	237	0.26	0.02	0.0271	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH727_LUNG	0.02	0.26	0.0452	FALSE	213	207	15	279	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	2326	chrM:12085:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	62	1	0.07	0.0271	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH727_LUNG	0.07	1	0.0452	FALSE	209	205	15	279	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1508	chrM:11267:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	11680	0	0	1	0.0271	0.0181	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH727_LUNG	0	1	0.0452	FALSE	231	217	16	283	0	FALSE	ACH-000775
NCIH727_LUNG	TNS3--PKD1L1	3	2	TNS3	35383	chr7:47336680:-	PKD1L1	83457	chr7:47884676:-	ONLY_REF_SPLICE	NO	149	12	0.03	0.29	0.0271	0.0181	{Klijn_CCL:Lung=2},TNS3->chr7:47314752-47622156:-,tensin_3,PKD1L1->chr7:47814250-47988088:-,polycystin_1_like_1,_transient_receptor_potential_channel_interacting	NCIH727_LUNG	0.03	0.29	0.0452	TRUE	0	0	0	1	0	FALSE	ACH-000775
NCIH727_LUNG	ATP2A3--MT-ND4L	3	1	ATP2A3	17807	chr17:3832624:-	MT-ND4L	24728	chrM:10474:+	INCL_NON_REF_SPLICE	YES	1006	0	0	1	0.0271	0.009	ATP2A3->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_3,chr17:3827169-3867736:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	0	1	0.0361	FALSE	0	0	0	1	0	FALSE	ACH-000775
NCIH727_LUNG	FBRSL1--STX2	3	1	FBRSL1	2311	chr12:133067447:+	STX2	28871	chr12:131311812:-	ONLY_REF_SPLICE	YES	4	21	0.5	0.16	0.0271	0.009	{Klijn_CCL:Lung=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,STX2->chr12:131274145-131323811:-,syntaxin_2	NCIH727_LUNG	0.16	0.5	0.0361	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	9040	10211	0	0	0.0271	0.009	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH727_LUNG	0	0	0.0361	FALSE	183	104	9	328	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	10005	1685	0	0	0.0271	0.009	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH727_LUNG	0	0	0.0361	FALSE	231	217	16	283	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1779	chrM:11538:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	10344	4	0	0.5	0.0271	0.009	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH727_LUNG	0	0.5	0.0361	FALSE	231	217	16	283	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	12743	686	0	0.01	0.0271	0.009	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH727_LUNG	0	0.01	0.0361	FALSE	231	217	16	283	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	10501	1361	0	0	0.0271	0.009	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH727_LUNG	0	0	0.0361	FALSE	231	217	16	283	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	8540	0	0	1	0.0271	0.009	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH727_LUNG	0	1	0.0361	FALSE	231	204	14	283	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ND4L	3	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0.009	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH727_LUNG	1	1	0.0361	FALSE	344	821	44	306	0	FALSE	ACH-000775
NCIH727_LUNG	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	18	1	0.18	0.0271	0.009	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH727_LUNG	0.18	1	0.0361	TRUE	458	1351	185	561	0	FALSE	ACH-000775
NCIH727_LUNG	ZC3H8--CKAP2L	3	1	ZC3H8	11093	chr2:112988280:-	CKAP2L	24128	chr2:113514791:-	ONLY_REF_SPLICE	YES	56	106	0.07	0.04	0.0271	0.009	ZC3H8->Oncogene{Bushman},chr2:112969102-113012713:-,zinc_finger_CCCH-type_containing_8,CKAP2L->chr2:113493930-113522254:-,cytoskeleton_associated_protein_2_like	NCIH727_LUNG	0.04	0.07	0.0361	TRUE	0	0	0	1	0	FALSE	ACH-000775
NCIH727_LUNG	ZNF738--CHMP1A	3	1	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	94	185	0.04	0.02	0.0271	0.009	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH727_LUNG	0.02	0.04	0.0361	TRUE	1	20	1	28	3	FALSE	ACH-000775
NCIH727_LUNG	CASC9--RP11-300E4.2	3	0	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH727_LUNG	1	1	0.0271	TRUE	0	23	0	19	23	TRUE	ACH-000775
NCIH727_LUNG	FARS2--RP3-380B8.4	3	0	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	NCIH727_LUNG	1	1	0.0271	FALSE	27	82	4	18	0	FALSE	ACH-000775
NCIH727_LUNG	FGF14-IT1--FGF14	3	0	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	NCIH727_LUNG	1	1	0.0271	TRUE	71	201	23	28	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH727_LUNG	1	1	0.0271	FALSE	183	104	9	328	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1079	chrM:10838:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH727_LUNG	1	1	0.0271	FALSE	230	192	14	283	0	FALSE	ACH-000775
NCIH727_LUNG	MT-ND5--MT-CO2	3	0	MT-ND5	1791	chrM:13127:+	MT-CO2	6185	chrM:7958:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0271	0	LOCAL_REARRANGEMENT:+:[4068],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH727_LUNG	1	1	0.0271	FALSE	10	5	0	10	0	FALSE	ACH-000775
NCIH727_LUNG	RP11-1L12.3--SLC5A12	3	0	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0271	0	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	NCIH727_LUNG	1	1	0.0271	TRUE	3	101	0	60	0	FALSE	ACH-000775
NCIH727_LUNG	ST3GAL3--SSBP3	2	3	ST3GAL3	11381	chr1:44303983:+	SSBP3	30464	chr1:54867618:-	ONLY_REF_SPLICE	YES	20	125	0.2	0.04	0.0181	0.0271	{Klijn_CCL:Lung=1},ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+,SSBP3->Oncogene{Bushman},chr1:54691105-54879152:-,single_stranded_DNA_binding_protein_3	NCIH727_LUNG	0.04	0.2	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	MICAL3--SSH2	2	2	MICAL3	2388	chr22:18484159:-	SSH2	67987	chr17:28175947:-	ONLY_REF_SPLICE	YES	9	4	0.31	0.5	0.0181	0.0181	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2	NCIH727_LUNG	0.31	0.5	0.0362	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	PPP1R8--SMAP2	2	2	PPP1R8	2650	chr1:28159327:+	SMAP2	19220	chr1:40874325:+	ONLY_REF_SPLICE	YES	63	60	0.06	0.06	0.0181	0.0181	PPP1R8->chr1:28157289-28178187:+,protein_phosphatase_1_regulatory_subunit_8,SMAP2->chr1:40810522-40888998:+,small_ArfGAP2	NCIH727_LUNG	0.06	0.06	0.0362	TRUE	0	0	0	1	0	FALSE	ACH-000775
NCIH727_LUNG	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.009	0.0452	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH727_LUNG	1	1	0.0542	FALSE	467	2173	244	435	0	FALSE	ACH-000775
NCIH727_LUNG	CS--APOF	2	0	CS	9162	chr12:56676204:-	APOF	18377	chr12:56755973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_REARRANGEMENT:-:[60177],CS->chr12:56665483-56694176:-,citrate_synthase,APOF->apolipoprotein_F,chr12:56754353-56756607:-	NCIH727_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	DNM1L--YARS2	2	0	DNM1L	18357	chr12:32890095:+	YARS2	31106	chr12:32903808:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	NEIGHBORS_OVERLAP:+:-:[18062],DNM1L->chr12:32832134-32898486:+,dynamin_1-like,YARS2->chr12:32880424-32908836:-,tyrosyl-tRNA_synthetase_2	NCIH727_LUNG	1	1	0.0181	FALSE	0	0	0	1	0	FALSE	ACH-000775
NCIH727_LUNG	KCMF1--TSSC1	2	0	KCMF1	1375	chr2:85198590:+	TSSC1	23227	chr2:3341920:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	KCMF1->Oncogene{Bushman},chr2:85198216-85286595:+,potassium_channel_modulatory_factor_1,TSSC1->chr2:3192696-3381653:-,tumor_suppressing_subtransferable_candidate_1	NCIH727_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	PSMD14--TANK	2	0	PSMD14	2882	chr2:162173080:+	TANK	40404	chr2:162091853:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	LOCAL_REARRANGEMENT:+:[71817],PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14,TANK->TRAF_family_member_associated_NFKB_activator,chr2:161993419-162092732:+	NCIH727_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	RP11-656D10.3--FAF1	2	0	RP11-656D10.3	1073	chr1:40974261:-	FAF1	12864	chr1:51171563:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	RP11-656D10.3->chr1:40958829-40974333:-,FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-	NCIH727_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	SARS--ATP1A1	2	0	SARS	1211	chr1:109756750:+	ATP1A1	18575	chr1:116926636:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	SARS->chr1:109756540-109780791:+,seryl-tRNA_synthetase,ATP1A1->ATPase_Na+/K+_transporting_subunit_alpha_1,chr1:116915290-116952883:+	NCIH727_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	ZNF608--ITGB1	2	0	ZNF608	4819	chr5:124079777:-	ITGB1	40530	chr10:33211274:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	ZNF608->Oncogene{Bushman},chr5:123972608-124084500:-,zinc_finger_protein_608,ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1	NCIH727_LUNG	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	MICAL3--SSH2	1	2	MICAL3	1279	chr22:18507047:-	SSH2	70284	chr17:28120955:-	ONLY_REF_SPLICE	NO	4	4	0.43	0.43	0.009	0.0181	MICAL3->chr22:18270415-18507325:-,microtubule_associated_monooxygenase,_calponin_and_LIM_domain_containing_3,SSH2->chr17:27952956-28257294:-,slingshot_protein_phosphatase_2	NCIH727_LUNG	0.43	0.43	0.0271	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.009	0.0181	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH727_LUNG	1	1	0.0271	FALSE	93	270	15	244	0	FALSE	ACH-000775
NCIH727_LUNG	DMXL2--CYP19A1	1	1	DMXL2	1375	chr15:51914656:-	CYP19A1	67186	chr15:51529206:-	ONLY_REF_SPLICE	YES	16	0	0.11	1	0.009	0.009	DMXL2->Dmx_like_2,chr15:51739908-51915030:-,CYP19A1->Oncogene{Bushman},chr15:51500254-51630807:-,cytochrome_P450_family_19_subfamily_A_member_1	NCIH727_LUNG	0.11	1	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	EPC2--ORC4	1	1	EPC2	3271	chr2:149447942:+	ORC4	25772	chr2:148733544:-	ONLY_REF_SPLICE	YES	25	35	0.07	0.05	0.009	0.009	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Whole_Blood=1},EPC2->chr2:149402009-149545130:+,enhancer_of_polycomb_homolog_2,ORC4->chr2:148687968-148779147:-,origin_recognition_complex_subunit_4	NCIH727_LUNG	0.05	0.07	0.018	TRUE	0	1	0	1	0	FALSE	ACH-000775
NCIH727_LUNG	ISCA1--AGTPBP1	1	1	ISCA1	3953	chr9:88886922:-	AGTPBP1	27269	chr9:88236200:-	ONLY_REF_SPLICE	YES	60	22	0.03	0.08	0.009	0.009	ISCA1->chr9:88879461-88897676:-,iron-sulfur_cluster_assembly_1,AGTPBP1->ATP/GTP_binding_protein_1,chr9:88161455-88356944:-	NCIH727_LUNG	0.03	0.08	0.018	TRUE	0	0	0	1	0	FALSE	ACH-000775
NCIH727_LUNG	LINC00299--AC007464.1	1	1	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.009	0.009	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	NCIH727_LUNG	1	1	0.018	TRUE	67	49	0	25	0	FALSE	ACH-000775
NCIH727_LUNG	PSMD14--TANK	1	1	PSMD14	2882	chr2:162173080:+	TANK	27436	chr2:162036125:+	ONLY_REF_SPLICE	YES	667	51	0	0.04	0.009	0.009	LOCAL_REARRANGEMENT:+:[71817],PSMD14->chr2:162164549-162268228:+,proteasome_26S_subunit,_non-ATPase_14,TANK->TRAF_family_member_associated_NFKB_activator,chr2:161993419-162092732:+	NCIH727_LUNG	0	0.04	0.018	FALSE	0	0	0	1	0	FALSE	ACH-000775
NCIH727_LUNG	RP11-141M1.3--STARD13	1	1	RP11-141M1.3	5599	chr13:34098375:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.009	0.009	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	NCIH727_LUNG	0.67	1	0.018	FALSE	9	22	2	16	0	FALSE	ACH-000775
NCIH727_LUNG	RP11-677M14.2--EXOC2	1	1	RP11-677M14.2	1423	chr11:124615811:-	EXOC2	9231	chr6:657250:-	ONLY_REF_SPLICE	YES	3	16	0.4	0.11	0.009	0.009	RP11-677M14.2->chr11:124614530-124616233:-,EXOC2->chr6:485133-693117:-,exocyst_complex_component_2	NCIH727_LUNG	0.11	0.4	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH727_LUNG	RP11-758M4.1--RPL7	1	1	RP11-758M4.1	2222	chr8:75525175:+	RPL7	18573	chr8:74205032:-	ONLY_REF_SPLICE	YES	6	33	0.25	0.06	0.009	0.009	RP11-758M4.1->chr8:75512010-75735548:+,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	NCIH727_LUNG	0.06	0.25	0.018	TRUE	0	0	0	1	0	TRUE	ACH-000775
NCIH460_LUNG	PVT1--RP11-89M16.1	2841	3445	PVT1	1202	chr8:128806980:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	202	5	0.97	1	26.9523	32.6823	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.97	1	59.6346	TRUE	0	1	0	3	1	TRUE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ND4L	3559	30	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	2020	0	0.64	1	33.7638	0.2846	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH460_LUNG	0.64	1	34.0484	FALSE	344	827	44	306	0	FALSE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	431	3732	PVT1	2457	chr8:128808254:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	101	5	0.98	1	4.0888	35.4051	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.98	1	39.4939	TRUE	0	1	0	3	1	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	289	3839	PVT1	2520	chr8:128808317:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	95	5	0.98	1	2.7417	36.4202	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.98	1	39.1619	TRUE	0	1	0	3	1	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	4	3881	PVT1	2520	chr8:128808317:+	RP11-89M16.1	28817	chr8:129576560:-	INCL_NON_REF_SPLICE	YES	95	4	0.98	1	0.0379	36.8186	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.98	1	36.8565	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	1	3839	PVT1	3930	chr8:128815805:+	RP11-89M16.1	29903	chr8:129573372:-	ONLY_REF_SPLICE	YES	94	5	0.98	1	0.0095	36.4202	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.98	1	36.4297	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	5	3770	PVT1	2457	chr8:128808254:+	RP11-89M16.1	28813	chr8:129576564:-	INCL_NON_REF_SPLICE	YES	101	4	0.97	1	0.0474	35.7656	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.97	1	35.813	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	4	3769	PVT1	2457	chr8:128808254:+	RP11-89M16.1	28817	chr8:129576560:-	INCL_NON_REF_SPLICE	YES	101	4	0.97	1	0.0379	35.7561	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.97	1	35.794	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	9	3465	PVT1	1202	chr8:128806980:+	RP11-89M16.1	28813	chr8:129576564:-	INCL_NON_REF_SPLICE	YES	202	4	0.95	1	0.0854	32.8721	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.95	1	32.9575	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	4	3458	PVT1	1202	chr8:128806980:+	RP11-89M16.1	28858	chr8:129576519:-	INCL_NON_REF_SPLICE	YES	202	4	0.94	1	0.0379	32.8057	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.94	1	32.8436	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	493	1355	PVT1	1202	chr8:128806980:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	202	13	0.9	0.99	4.677	12.8547	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.9	0.99	17.5317	TRUE	0	2	0	3	2	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	46	1456	PVT1	2457	chr8:128808254:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	101	13	0.94	0.99	0.4364	13.8129	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.94	0.99	14.2493	TRUE	0	2	0	3	2	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	26	1489	PVT1	2520	chr8:128808317:+	RP11-89M16.1	33007	chr8:129440630:-	ONLY_REF_SPLICE	YES	95	13	0.94	0.99	0.2467	14.126	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.94	0.99	14.3727	TRUE	0	2	0	3	2	TRUE	ACH-000463
NCIH460_LUNG	SLC38A2--PTMA	204	0	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.9353	0	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH460_LUNG	1	1	1.9353	TRUE	0	0	0	10	0	TRUE	ACH-000463
NCIH460_LUNG	TIMM23B--LINC00843	179	60	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6982	0.5692	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH460_LUNG	1	1	2.2674	TRUE	508	994	45	981	0	FALSE	ACH-000463
NCIH460_LUNG	TIMM23--RP11-464F9.1	111	10	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	761	7	0.14	0.95	1.053	0.0949	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH460_LUNG	0.14	0.95	1.1479	TRUE	519	3926	326	965	0	FALSE	ACH-000463
NCIH460_LUNG	APP--NCL	102	2	APP	11587	chr21:27394262:-	NCL	37020	chr2:232326419:-	INCL_NON_REF_SPLICE	YES	1393	5642	0.07	0.02	0.9677	0.019	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,NCL->chr2:232318242-232348352:-,nucleolin	NCIH460_LUNG	0.02	0.07	0.9867	TRUE	0	0	0	1	0	FALSE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	19	303	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34734	chr8:129435839:-	ONLY_REF_SPLICE	YES	202	688	0.61	0.32	0.1803	2.8745	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.32	0.61	3.0548	TRUE	0	1	0	3	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	12	310	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34727	chr8:129435846:-	INCL_NON_REF_SPLICE	YES	202	735	0.61	0.3	0.1138	2.9409	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.3	0.61	3.0547	TRUE	0	1	0	3	0	TRUE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	10	314	PVT1	1202	chr8:128806980:+	RP11-89M16.1	34720	chr8:129435853:-	INCL_NON_REF_SPLICE	YES	202	736	0.62	0.31	0.0949	2.9789	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.31	0.62	3.0738	TRUE	0	1	0	3	0	TRUE	ACH-000463
NCIH460_LUNG	MT-TA--MT-TC	47	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4459	0.0759	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH460_LUNG	1	1	0.5218	FALSE	462	80	0	856	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ND4L	5	128	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	120	0	0.53	1	0.0474	1.2143	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH460_LUNG	0.53	1	1.2617	FALSE	344	827	44	306	0	FALSE	ACH-000463
NCIH460_LUNG	C15orf57--CBX3	27	38	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	109	46	0.37	0.59	0.2561	0.3605	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH460_LUNG	0.37	0.59	0.6166	TRUE	267	562	48	632	0	FALSE	ACH-000463
NCIH460_LUNG	TUBA1B--PTMA	36	0	TUBA1B	4414	chr12:49521767:-	PTMA	13136	chr2:232577153:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3415	0	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH460_LUNG	1	1	0.3415	TRUE	0	0	0	4	0	TRUE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ND4L	3	129	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	124	0	0.52	1	0.0285	1.2238	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH460_LUNG	0.52	1	1.2523	FALSE	344	827	44	306	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ND4L	3	129	MT-ND4	1223	chrM:10982:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	127	0	0.51	1	0.0285	1.2238	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH460_LUNG	0.51	1	1.2523	FALSE	344	827	44	306	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ND4L	3	126	MT-ND4	1178	chrM:10937:+	MT-ND4L	5464	chrM:10555:+	INCL_NON_REF_SPLICE	YES	77	0	0.63	1	0.0285	1.1953	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH460_LUNG	0.63	1	1.2238	FALSE	344	826	44	306	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ND4L	3	119	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	28	0	0.81	1	0.0285	1.1289	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH460_LUNG	0.81	1	1.1574	FALSE	344	826	44	306	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ND4L	4	100	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	17	0	0.86	1	0.0379	0.9487	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH460_LUNG	0.86	1	0.9866	FALSE	344	826	44	306	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	28	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2656	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	1	1	0.2656	FALSE	230	193	14	283	0	FALSE	ACH-000463
NCIH460_LUNG	APP--NCL	25	2	APP	11587	chr21:27394262:-	NCL	37065	chr2:232326374:-	INCL_NON_REF_SPLICE	YES	1393	5399	0.02	0	0.2372	0.019	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,NCL->chr2:232318242-232348352:-,nucleolin	NCIH460_LUNG	0	0.02	0.2562	TRUE	0	0	0	1	0	FALSE	ACH-000463
NCIH460_LUNG	PLXDC1--TAF13	25	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2372	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH460_LUNG	1	1	0.2372	TRUE	7	10	0	216	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ND4L	5	79	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	15	0	0.85	1	0.0474	0.7495	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH460_LUNG	0.85	1	0.7969	FALSE	344	821	44	306	0	FALSE	ACH-000463
NCIH460_LUNG	ANKRD11--CTC-454I21.3	24	0	ANKRD11	4629	chr16:89484692:-	CTC-454I21.3	39317	chr19:37698156:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2277	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,CTC-454I21.3->chr19:37583921-37701414:-	NCIH460_LUNG	1	1	0.2277	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ND4L	3	78	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	280	0	0.22	1	0.0285	0.74	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH460_LUNG	0.22	1	0.7685	FALSE	344	827	44	306	0	FALSE	ACH-000463
NCIH460_LUNG	HSPBP1--GRK5	22	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2087	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH460_LUNG	1	1	0.2087	TRUE	1	39	0	134	39	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	15	17	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	22597	0	0	1	0.1423	0.1613	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	1	0.3036	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ND4L	11	32	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	14969	0	0	1	0.1044	0.3036	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH460_LUNG	0	1	0.408	FALSE	328	800	43	304	0	FALSE	ACH-000463
NCIH460_LUNG	NPM1P24--SET	19	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1803	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH460_LUNG	1	1	0.1803	TRUE	0	0	0	434	0	FALSE	ACH-000463
NCIH460_LUNG	AL589743.1--RP11-536C10.17	18	1	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	20	0	0.49	1	0.1708	0.0095	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	NCIH460_LUNG	0.49	1	0.1803	TRUE	0	33	0	45	33	FALSE	ACH-000463
NCIH460_LUNG	AP000525.9--LA16c-60G3.6	18	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	19	0	0.5	1	0.1708	0.0095	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH460_LUNG	0.5	1	0.1803	TRUE	0	42	0	133	42	FALSE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	2	61	PVT1	1202	chr8:128806980:+	RP11-89M16.1	39491	chr8:129426654:-	ONLY_REF_SPLICE	YES	202	1050	0.24	0.06	0.019	0.5787	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.06	0.24	0.5977	TRUE	0	1	0	2	0	TRUE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	17	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1613	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	1	1	0.1613	FALSE	230	198	14	283	0	FALSE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	7	39	PVT1	1202	chr8:128806980:+	RP11-89M16.1	40686	chr8:129419092:-	ONLY_REF_SPLICE	YES	202	1380	0.19	0.03	0.0664	0.37	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.03	0.19	0.4364	TRUE	0	1	0	2	0	FALSE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	1	63	PVT1	2457	chr8:128808254:+	RP11-89M16.1	39491	chr8:129426654:-	ONLY_REF_SPLICE	YES	101	1050	0.39	0.06	0.0095	0.5977	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.06	0.39	0.6072	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	MT-TA--MT-TC	14	9	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1328	0.0854	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH460_LUNG	1	1	0.2182	FALSE	462	80	0	856	0	FALSE	ACH-000463
NCIH460_LUNG	C15orf57--CBX3	8	31	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	107	47	0.27	0.45	0.0759	0.2941	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH460_LUNG	0.27	0.45	0.37	TRUE	267	562	48	632	0	FALSE	ACH-000463
NCIH460_LUNG	APP--NCL	15	2	APP	11579	chr21:27394270:-	NCL	37958	chr2:232325481:-	INCL_NON_REF_SPLICE	YES	1373	5413	0.01	0	0.1423	0.019	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,NCL->chr2:232318242-232348352:-,nucleolin	NCIH460_LUNG	0	0.01	0.1613	TRUE	0	0	0	1	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	6	37	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	40	0	0.52	1	0.0569	0.351	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0.52	1	0.4079	FALSE	213	207	15	279	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ND4L	11	15	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2252	0	0.01	1	0.1044	0.1423	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH460_LUNG	0.01	1	0.2467	FALSE	344	827	44	306	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	8	25	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18656	80	0	0.29	0.0759	0.2372	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	0.29	0.3131	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	4	41	MT-ND4	2176	chrM:11935:+	MT-ATP8	5382	chrM:8369:+	INCL_NON_REF_SPLICE	YES	8809	0	0.01	1	0.0379	0.389	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0.01	1	0.4269	FALSE	231	215	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	7	28	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	21097	0	0	1	0.0664	0.2656	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	1	0.332	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ND4L	10	15	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	13449	0	0	1	0.0949	0.1423	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH460_LUNG	0	1	0.2372	FALSE	344	827	44	306	0	FALSE	ACH-000463
NCIH460_LUNG	C15orf57--CBX3	5	31	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	107	47	0.25	0.43	0.0474	0.2941	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH460_LUNG	0.25	0.43	0.3415	TRUE	267	562	48	632	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ND4L	9	15	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1368	0	0.02	1	0.0854	0.1423	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH460_LUNG	0.02	1	0.2277	FALSE	344	827	44	306	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	3	38	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	5805	0	0.01	1	0.0285	0.3605	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0.01	1	0.389	FALSE	222	212	16	282	0	FALSE	ACH-000463
NCIH460_LUNG	TANGO6--GS1-293C5.1	11	6	TANGO6	19367	chr16:68964198:+	GS1-293C5.1	30642	chr7:95045494:+	INCL_NON_REF_SPLICE	YES	41	0	0.29	1	0.1044	0.0569	TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog,GS1-293C5.1->chr7:95045420-95045774:+	NCIH460_LUNG	0.29	1	0.1613	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	5	28	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5354	80	0.01	0.29	0.0474	0.2656	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0.01	0.29	0.313	FALSE	218	210	16	281	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	3	36	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	17835	0	0	1	0.0285	0.3415	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	1	0.37	FALSE	231	215	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	6	24	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	21715	0	0	1	0.0569	0.2277	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	1	0.2846	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	6	23	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	18656	224	0	0.11	0.0569	0.2182	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	0.11	0.2751	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	8	14	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	22577	0	0	1	0.0759	0.1328	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	1	0.2087	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	7	18	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21312	80	0	0.24	0.0664	0.1708	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	0.24	0.2372	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	6	21	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	21126	0	0	1	0.0569	0.1992	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	1	0.2561	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	5	25	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	20970	0	0	1	0.0474	0.2372	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	1	0.2846	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	1	41	PVT1	2520	chr8:128808317:+	RP11-89M16.1	40686	chr8:129419092:-	ONLY_REF_SPLICE	NO	95	1380	0.31	0.03	0.0095	0.389	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.03	0.31	0.3985	TRUE	0	1	0	2	0	FALSE	ACH-000463
NCIH460_LUNG	PVT1--RP11-89M16.1	1	41	PVT1	2457	chr8:128808254:+	RP11-89M16.1	40686	chr8:129419092:-	ONLY_REF_SPLICE	YES	101	1380	0.29	0.03	0.0095	0.389	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RP11-89M16.1->chr8:129417515-129576925:-	NCIH460_LUNG	0.03	0.29	0.3985	TRUE	0	1	0	2	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND3--MT-ATP8	11	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1044	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	1	1	0.1044	FALSE	351	233	23	137	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	4	26	MT-ND4	1998	chrM:11757:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19659	10	0	0.75	0.0379	0.2467	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	0.75	0.2846	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-TA--MT-TC	8	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0759	0.0949	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH460_LUNG	1	1	0.1708	FALSE	462	80	0	856	0	FALSE	ACH-000463
NCIH460_LUNG	MT-CO3--MT-ATP8	10	0	MT-CO3	1123	chrM:9329:+	MT-ATP8	4843	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0949	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	1	1	0.0949	FALSE	16	100	1	11	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	4	24	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	21019	0	0	1	0.0379	0.2277	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	1	0.2656	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	3	26	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17757	80	0	0.27	0.0285	0.2467	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	0.27	0.2752	FALSE	231	215	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	3	25	MT-ND4	2288	chrM:12047:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	YES	19	300	0.6	0.09	0.0285	0.2372	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0.09	0.6	0.2657	FALSE	213	207	15	279	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	4	21	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	21762	0	0	1	0.0379	0.1992	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	1	0.2371	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MTATP6P1--MT-ND2	9	0	MTATP6P1	1098	chr1:569173:+	MT-ND2	5521	chrM:5309:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0854	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH460_LUNG	1	1	0.0854	FALSE	11	0	0	2	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	8	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18561	10	0	0.52	0.0759	0.0285	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	0.52	0.1044	FALSE	231	205	14	283	0	FALSE	ACH-000463
NCIH460_LUNG	APP--NCL	8	2	APP	11579	chr21:27394270:-	NCL	37006	chr2:232326433:-	INCL_NON_REF_SPLICE	YES	1373	5699	0.01	0	0.0759	0.019	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,NCL->chr2:232318242-232348352:-,nucleolin	NCIH460_LUNG	0	0.01	0.0949	FALSE	0	0	0	1	0	FALSE	ACH-000463
NCIH460_LUNG	CHSY3--HSPA8P4	7	6	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	61	0	0.18	1	0.0664	0.0569	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	NCIH460_LUNG	0.18	1	0.1233	FALSE	89	26	1	44	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	7	6	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	22332	1438	0	0.01	0.0664	0.0569	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	0.01	0.1233	FALSE	231	205	14	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	5	14	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	22577	0	0	1	0.0474	0.1328	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	1	0.1802	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	4	17	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	23385	0	0	1	0.0379	0.1613	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	1	0.1992	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	4	16	MT-ND4	1754	chrM:11513:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	21126	118	0	0.14	0.0379	0.1518	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	0.14	0.1897	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	5	11	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	21312	1818	0	0.01	0.0474	0.1044	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	0.01	0.1518	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	RP11-120D5.1--MID1	7	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	92	0.59	0.1	0.0664	0.0285	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH460_LUNG	0.1	0.59	0.0949	FALSE	16	356	14	466	0	FALSE	ACH-000463
NCIH460_LUNG	ADIPOR2--ZNF565	7	2	ADIPOR2	2309	chr12:1800357:+	ZNF565	25842	chr19:36692952:-	ONLY_REF_SPLICE	YES	31	8	0.23	0.53	0.0664	0.019	ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+,ZNF565->chr19:36673188-36737159:-,zinc_finger_protein_565	NCIH460_LUNG	0.23	0.53	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	ADIPOR2--ZNF565	7	2	ADIPOR2	2331	chr12:1800379:+	ZNF565	26916	chr19:36686058:-	ONLY_REF_SPLICE	YES	41	12	0.18	0.43	0.0664	0.019	ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+,ZNF565->chr19:36673188-36737159:-,zinc_finger_protein_565	NCIH460_LUNG	0.18	0.43	0.0854	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	4	13	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	25560	775	0	0.02	0.0379	0.1233	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	0.02	0.1612	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	FTH1--ACTG1	7	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH460_LUNG	1	1	0.0664	TRUE	0	0	0	64	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	3	16	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	23262	0	0	1	0.0285	0.1518	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	1	0.1803	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	REV3L--RPL28	7	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH460_LUNG	1	1	0.0664	TRUE	22	156	2	142	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	3	15	MT-ND4	1503	chrM:11262:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	23443	0	0	1	0.0285	0.1423	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	1	0.1708	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ND4L	3	15	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	120	0	0.13	1	0.0285	0.1423	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH460_LUNG	0.13	1	0.1708	FALSE	344	826	44	306	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	5	6	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20745	80	0	0.12	0.0474	0.0569	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	0.12	0.1043	FALSE	231	205	14	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-CO3--MT-ATP8	6	1	MT-CO3	1263	chrM:9469:+	MT-ATP8	4826	chrM:8407:+	INCL_NON_REF_SPLICE	YES	18225	0	0	1	0.0569	0.0095	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	1	0.0664	FALSE	16	100	1	11	0	FALSE	ACH-000463
NCIH460_LUNG	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0569	0.0095	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH460_LUNG	1	1	0.0664	FALSE	462	80	0	856	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	3	12	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	23328	1	0	0.94	0.0285	0.1138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	0.94	0.1423	FALSE	231	216	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	RCC1--UBE2D2	6	0	RCC1	2175	chr1:28834672:+	UBE2D2	22302	chr5:138979957:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0569	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	NCIH460_LUNG	1	1	0.0569	TRUE	0	20	0	3	11	TRUE	ACH-000463
NCIH460_LUNG	ZRANB2--WDR78	3	12	ZRANB2	7616	chr1:71534959:-	WDR78	32177	chr1:67306354:-	ONLY_REF_SPLICE	YES	325	0	0.04	1	0.0285	0.1138	ZRANB2->chr1:71528974-71546980:-,zinc_finger_RANBP2-type_containing_2,WDR78->WD_repeat_domain_78,chr1:67278568-67390570:-	NCIH460_LUNG	0.04	1	0.1423	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	23385	80	0	0.14	0.0285	0.0949	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	0.14	0.1234	FALSE	231	217	16	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-TA--MT-TC	3	10	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0.0949	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH460_LUNG	1	1	0.1234	FALSE	462	80	0	856	0	FALSE	ACH-000463
NCIH460_LUNG	RP11-123O10.4--GRIP1	5	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0474	0.0095	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH460_LUNG	1	1	0.0569	FALSE	416	2512	207	587	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	1	1	0.0474	FALSE	230	193	14	283	0	FALSE	ACH-000463
NCIH460_LUNG	WTAPP1--RUVBL1	5	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0474	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	NCIH460_LUNG	1	1	0.0474	TRUE	9	252	6	66	0	FALSE	ACH-000463
NCIH460_LUNG	MTATP6P1--MT-ND2	4	2	MTATP6P1	1126	chr1:569201:+	MT-ND2	5513	chrM:5301:+	INCL_NON_REF_SPLICE	YES	1270	7466	0	0	0.0379	0.019	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH460_LUNG	0	0	0.0569	FALSE	11	0	0	2	0	FALSE	ACH-000463
NCIH460_LUNG	APP--NCL	4	1	APP	10449	chr21:27423357:-	NCL	37023	chr2:232326416:-	INCL_NON_REF_SPLICE	NO	1221	5665	0	0	0.0379	0.0095	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,NCL->chr2:232318242-232348352:-,nucleolin	NCIH460_LUNG	0	0	0.0474	FALSE	0	0	0	1	0	FALSE	ACH-000463
NCIH460_LUNG	CDH13--RP11-22H5.2	4	1	CDH13	1335	chr16:82660742:+	RP11-22H5.2	37471	chr16:82856817:+	ONLY_REF_SPLICE	YES	128	0	0.04	1	0.0379	0.0095	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH460_LUNG	0.04	1	0.0474	FALSE	0	1	0	7	0	FALSE	ACH-000463
NCIH460_LUNG	CDH13--RP11-22H5.2	4	1	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	128	0	0.04	1	0.0379	0.0095	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH460_LUNG	0.04	1	0.0474	FALSE	14	31	0	36	0	FALSE	ACH-000463
NCIH460_LUNG	TUBA1B--PTMA	4	1	TUBA1B	4433	chr12:49521748:-	PTMA	12067	chr2:232576084:+	INCL_NON_REF_SPLICE	NO	3147	9437	0	0	0.0379	0.0095	TUBA1B->chr12:49521565-49525180:-,tubulin_alpha_1b,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	NCIH460_LUNG	0	0	0.0474	FALSE	0	0	0	4	0	FALSE	ACH-000463
NCIH460_LUNG	AP000525.9--LA16c-60G3.6	4	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	17528	chr22:16419513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NCIH460_LUNG	1	1	0.0379	TRUE	0	5	0	18	5	TRUE	ACH-000463
NCIH460_LUNG	EEF2--RPS28	4	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH460_LUNG	1	1	0.0379	TRUE	0	0	0	100	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	1	1	0.0379	FALSE	230	193	14	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH460_LUNG	1	1	0.0379	FALSE	344	821	44	306	0	FALSE	ACH-000463
NCIH460_LUNG	MTATP6P1--MT-ND2	3	4	MTATP6P1	1140	chr1:569215:+	MT-ND2	5395	chrM:5183:+	INCL_NON_REF_SPLICE	YES	1864	12441	0	0	0.0285	0.0379	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH460_LUNG	0	0	0.0664	FALSE	11	0	0	2	0	FALSE	ACH-000463
NCIH460_LUNG	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0379	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH460_LUNG	1	1	0.0379	TRUE	0	0	0	434	0	FALSE	ACH-000463
NCIH460_LUNG	RP11-680G10.1--GSE1	4	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0379	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH460_LUNG	1	1	0.0379	TRUE	465	1949	224	605	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	18411	1101	0	0.01	0.0285	0.0285	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	0.01	0.057	FALSE	231	205	14	283	0	FALSE	ACH-000463
NCIH460_LUNG	MT-TA--MT-TC	3	3	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0.0285	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH460_LUNG	1	1	0.057	FALSE	462	80	0	856	0	FALSE	ACH-000463
NCIH460_LUNG	MT-CO3--MT-ATP8	3	2	MT-CO3	1450	chrM:9656:+	MT-ATP8	4906	chrM:8487:+	INCL_NON_REF_SPLICE	YES	19343	0	0	1	0.0285	0.019	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	1	0.0475	FALSE	16	100	1	11	0	FALSE	ACH-000463
NCIH460_LUNG	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	12	1	0.29	0.0285	0.019	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH460_LUNG	0.29	1	0.0475	TRUE	458	1351	185	561	0	FALSE	ACH-000463
NCIH460_LUNG	E2F4--RPL14	3	1	E2F4	4714	chr16:67229785:+	RPL14	13673	chr3:40503545:+	INCL_NON_REF_SPLICE	YES	390	3228	0.01	0	0.0285	0.0095	GTEx&tcga_normals:24/3694=0.65%,GTEx:0.11%,GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},E2F4->E2F_transcription_factor_4,Oncogene{Bushman},chr16:67226072-67232821:+,RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14	NCIH460_LUNG	0	0.01	0.038	FALSE	0	3	0	1	0	FALSE	ACH-000463
NCIH460_LUNG	MT-CO3--MT-ATP8	3	1	MT-CO3	1369	chrM:9575:+	MT-ATP8	4860	chrM:8441:+	INCL_NON_REF_SPLICE	YES	19237	0	0	1	0.0285	0.0095	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	1	0.038	FALSE	16	100	1	11	0	FALSE	ACH-000463
NCIH460_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1244	chrM:11003:+	MT-ATP8	5476	chrM:8463:+	INCL_NON_REF_SPLICE	YES	16011	3	0	0.57	0.0285	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	0	0.57	0.038	FALSE	231	204	14	283	0	FALSE	ACH-000463
NCIH460_LUNG	TKT--MT-ND1	3	1	TKT	1163	chr3:53289906:-	MT-ND1	21265	chrM:3315:+	INCL_NON_REF_SPLICE	YES	3281	0	0	1	0.0285	0.0095	TKT->chr3:53258723-53290068:-,transketolase,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	NCIH460_LUNG	0	1	0.038	FALSE	0	0	0	2	0	FALSE	ACH-000463
NCIH460_LUNG	AC131097.3--AC093642.5	2	4	AC131097.3	2273	chr2:242824786:+	AC093642.5	11670	chr2:243037038:+	ONLY_REF_SPLICE	YES	0	2	1	0.75	0.019	0.0379	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	NCIH460_LUNG	0.75	1	0.0569	FALSE	3	20	2	16	0	FALSE	ACH-000463
NCIH460_LUNG	ANKRD11--CTC-454I21.3	3	0	ANKRD11	4629	chr16:89484692:-	CTC-454I21.3	44285	chr19:37660956:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,CTC-454I21.3->chr19:37583921-37701414:-	NCIH460_LUNG	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	FTH1--ACTG1	3	0	FTH1	1225	chr11:61734908:-	ACTG1	10554	chr17:79479822:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH460_LUNG	1	1	0.0285	TRUE	0	0	0	64	0	FALSE	ACH-000463
NCIH460_LUNG	HSPBP1--GRK5	3	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH460_LUNG	1	1	0.0285	TRUE	1	39	0	134	39	FALSE	ACH-000463
NCIH460_LUNG	MKI67--GNAS	3	0	MKI67	1810	chr10:129923840:-	GNAS	42554	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	MKI67->chr10:129894923-129924649:-,marker_of_proliferation_Ki-67,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH460_LUNG	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	MT-CO3--MT-ATP8	3	0	MT-CO3	1140	chrM:9346:+	MT-ATP8	4859	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	1	1	0.0285	FALSE	16	100	1	11	0	FALSE	ACH-000463
NCIH460_LUNG	MT-CO3--MT-ATP8	3	0	MT-CO3	1122	chrM:9328:+	MT-ATP8	4832	chrM:8413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0285	0	LOCAL_REARRANGEMENT:+:[635],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH460_LUNG	1	1	0.0285	FALSE	16	100	1	11	0	FALSE	ACH-000463
NCIH460_LUNG	NAA60--UBA52	3	0	NAA60	4004	chr16:3454648:+	UBA52	27474	chr19:18684103:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	NAA60->N(alpha)-acetyltransferase_60,_NatF_catalytic_subunit,chr16:3415099-3536960:+,chr16:3493611-3536963:+,UBA52->chr19:18682540-18688360:+,ubiquitin_A-52_residue_ribosomal_protein_fusion_product_1	NCIH460_LUNG	1	1	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	SAMD5--SASH1	3	0	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0285	0	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NCIH460_LUNG	1	1	0.0285	TRUE	53	396	64	110	0	FALSE	ACH-000463
NCIH460_LUNG	ADIPOR2--ZNF565	2	2	ADIPOR2	2309	chr12:1800357:+	ZNF565	26916	chr19:36686058:-	ONLY_REF_SPLICE	YES	31	12	0.11	0.25	0.019	0.019	ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+,ZNF565->chr19:36673188-36737159:-,zinc_finger_protein_565	NCIH460_LUNG	0.11	0.25	0.038	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	RP11-120D5.1--MID1	2	2	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	10	92	0.29	0.04	0.019	0.019	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH460_LUNG	0.04	0.29	0.038	FALSE	0	48	1	163	0	FALSE	ACH-000463
NCIH460_LUNG	AC083884.8--UBE2D2	2	1	AC083884.8	1297	chr7:74143043:-	UBE2D2	14295	chr5:138979957:+	ONLY_REF_SPLICE	YES	62	91	0.05	0.03	0.019	0.0095	AC083884.8->chr7:74103273-74143339:-,UBE2D2->Oncogene{Bushman},chr5:138906016-139008018:+,ubiquitin_conjugating_enzyme_E2_D2	NCIH460_LUNG	0.03	0.05	0.0285	TRUE	0	0	0	1	0	FALSE	ACH-000463
NCIH460_LUNG	CDH13--RP11-22H5.2	2	1	CDH13	3588	chr16:82673070:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	152	0	0.02	1	0.019	0.0095	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	NCIH460_LUNG	0.02	1	0.0285	FALSE	0	2	0	10	0	FALSE	ACH-000463
NCIH460_LUNG	PVT1--MYC	2	1	PVT1	1202	chr8:128806980:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	202	460	0.01	0.01	0.019	0.0095	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	NCIH460_LUNG	0.01	0.01	0.0285	FALSE	3	14	0	24	0	FALSE	ACH-000463
NCIH460_LUNG	AC019221.4--CTBP1	2	0	AC019221.4	2212	chr2:234297013:+	CTBP1	10321	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	AC019221.4->chr2:234263220-234301045:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	CNOT6--RUFY1	2	0	CNOT6	2344	chr5:179922755:+	RUFY1	45157	chr5:179036377:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	CNOT6->CCR4-NOT_transcription_complex_subunit_6,chr5:179921412-180005405:+,RUFY1->RUN_and_FYVE_domain_containing_1,chr5:178977559-179037027:+	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	DIDO1--GNAS	2	0	DIDO1	1157	chr20:61569148:-	GNAS	44888	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	GPR65--GALC	2	0	GPR65	1099	chr14:88471566:+	GALC	23326	chr14:88417092:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	LOCAL_INVERSION:+:-:[11459],GPR65->G_protein-coupled_receptor_65,chr14:88471468-88478419:+,GALC->chr14:88304164-88460009:-,galactosylceramidase	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH460_LUNG	1	1	0.019	TRUE	3	14	2	43	0	FALSE	ACH-000463
NCIH460_LUNG	NAA60--ZNF75A	2	0	NAA60	1084	chr16:3415182:+	ZNF75A	32120	chr16:3361753:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	PROTCLUST,LOCAL_INVERSION:+,chr16:+:[46247],NAA60->N(alpha)-acetyltransferase_60,_NatF_catalytic_subunit,chr16:3415099-3536960:+,chr16:3493611-3536963:+,ZNF75A->chr16:3355406-3368852:+,zinc_finger_protein_75a	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	NPM1--MFAP3	2	0	NPM1	5819	chr5:170819982:+	MFAP3	17080	chr5:153429117:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),MFAP3->chr5:153418466-153600038:+,microfibrillar_associated_protein_3	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	PSMD1--SMOC1	2	0	PSMD1	16072	chr2:231951895:+	SMOC1	41076	chr14:70459134:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	PSMD1->chr2:231921578-232037541:+,proteasome_26S_subunit,_non-ATPase_1,SMOC1->SPARC_related_modular_calcium_binding_1,chr14:70320848-70499083:+	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	RBM6--CBFB	2	0	RBM6	3185	chr3:50000118:+	CBFB	38641	chr16:67116116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	RCC1--RNF149	2	0	RCC1	2175	chr1:28834672:+	RNF149	30646	chr2:101888206:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	RCC1--TBCA	2	0	RCC1	2175	chr1:28834672:+	TBCA	22542	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	NCIH460_LUNG	1	1	0.019	TRUE	0	3	0	7	0	TRUE	ACH-000463
NCIH460_LUNG	RHOA--DAG1	2	0	RHOA	2179	chr3:49449253:-	DAG1	21789	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[55715],RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,DAG1->chr3:49506146-49573048:+,dystroglycan_1	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	8	0	TRUE	ACH-000463
NCIH460_LUNG	RP11-440L14.1--GAK	2	0	RP11-440L14.1	1078	chr4:775560:-	GAK	32943	chr4:864692:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	GTEx_FI:{Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[67427],RP11-440L14.1->chr4:756175-775637:-,GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase	NCIH460_LUNG	1	1	0.019	TRUE	1	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	SLCO4A1--GNAS	2	0	SLCO4A1	1109	chr20:61273905:+	GNAS	33894	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH460_LUNG	1	1	0.019	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	TET2--UBE2D3	2	0	TET2	2105	chr4:106068136:+	UBE2D3	38083	chr4:103731012:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.019	0	TET2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr4:106067032-106200973:+,tet_methylcytosine_dioxygenase_2,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	NCIH460_LUNG	1	1	0.019	TRUE	0	1	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	AC131097.3--AC093642.5	1	3	AC131097.3	2273	chr2:242824786:+	AC093642.5	12811	chr2:243056790:+	ONLY_REF_SPLICE	YES	0	9	1	0.31	0.0095	0.0285	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	NCIH460_LUNG	0.31	1	0.038	FALSE	2	37	1	16	0	FALSE	ACH-000463
NCIH460_LUNG	ADIPOR2--ZNF565	1	3	ADIPOR2	2331	chr12:1800379:+	ZNF565	24746	chr19:36694444:-	ONLY_REF_SPLICE	YES	41	9	0.09	0.31	0.0095	0.0285	ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+,ZNF565->chr19:36673188-36737159:-,zinc_finger_protein_565	NCIH460_LUNG	0.09	0.31	0.038	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	ADIPOR2--ZNF565	1	2	ADIPOR2	2331	chr12:1800379:+	ZNF565	25842	chr19:36692952:-	ONLY_REF_SPLICE	YES	41	8	0.07	0.27	0.0095	0.019	ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+,ZNF565->chr19:36673188-36737159:-,zinc_finger_protein_565	NCIH460_LUNG	0.07	0.27	0.0285	TRUE	0	0	0	1	0	TRUE	ACH-000463
NCIH460_LUNG	CPSF6--NR0B1	1	2	CPSF6	11046	chr12:69656342:+	NR0B1	23329	chrX:30322940:-	ONLY_REF_SPLICE	NO	370	491	0.01	0.01	0.0095	0.019	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,NR0B1->chrX:30322323-30327715:-,nuclear_receptor_subfamily_0_group_B_member_1	NCIH460_LUNG	0.01	0.01	0.0285	FALSE	0	1	0	8	0	FALSE	ACH-000463
NCIH460_LUNG	KIAA1731--RNF149	1	1	KIAA1731	21008	chr11:93454578:+	RNF149	44259	chr2:101888206:-	ONLY_REF_SPLICE	YES	38	19	0.05	0.1	0.0095	0.0095	KIAA1731->chr11:93394805-93463522:+,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	NCIH460_LUNG	0.05	0.1	0.019	TRUE	0	0	0	2	0	FALSE	ACH-000463
NCIH460_LUNG	METTL8--SFSWAP	1	1	METTL8	7519	chr2:172195694:-	SFSWAP	28661	chr12:132199367:+	ONLY_REF_SPLICE	YES	92	115	0.02	0.02	0.0095	0.0095	METTL8->chr2:172173919-172291312:-,methyltransferase_like_8,SFSWAP->chr12:132195626-132284282:+,splicing_factor,_suppressor_of_white-apricot_homolog	NCIH460_LUNG	0.02	0.02	0.019	TRUE	0	0	0	1	0	FALSE	ACH-000463
NCIH460_LUNG	MTMR2--CEP57	1	1	MTMR2	5940	chr11:95621320:-	CEP57	31194	chr11:95532396:+	ONLY_REF_SPLICE	NO	195	187	0.01	0.01	0.0095	0.0095	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},LOCAL_INVERSION:-:+:[189],MTMR2->chr11:95566046-95658479:-,myotubularin_related_protein_2,CEP57->centrosomal_protein_57,chr11:95523129-95565857:+	NCIH460_LUNG	0.01	0.01	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000463
NCIH460_LUNG	NOC4L--FBRSL1	1	1	NOC4L	4659	chr12:132632651:+	FBRSL1	23658	chr12:133144067:+	ONLY_REF_SPLICE	YES	187	87	0.01	0.02	0.0095	0.0095	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	NCIH460_LUNG	0.01	0.02	0.019	FALSE	16	9	0	6	0	FALSE	ACH-000463
NCIH460_LUNG	PDE4D--DEPDC1B	1	1	PDE4D	3298	chr5:59744464:-	DEPDC1B	63202	chr5:59943360:-	ONLY_REF_SPLICE	NO	11	276	0.15	0.01	0.0095	0.0095	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1|LUSC:1|PRAD:2],LOCAL_REARRANGEMENT:-:[74792],PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-	NCIH460_LUNG	0.01	0.15	0.019	FALSE	0	2	0	1	2	FALSE	ACH-000463
NCIH460_LUNG	PILRB--GATS	1	1	PILRB	2935	chr7:99936512:+	GATS	25912	chr7:99810756:-	ONLY_REF_SPLICE	YES	115	11	0.02	0.15	0.0095	0.0095	GTEx&tcga_normals:22/3694=0.60%,GTEx_FI:{Muscle=[count:2=pct:0.9],Brain=[count:1=pct:0.2]},GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Cerebellum=1},LOCAL_INVERSION:+:-,chr7:[63900],PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta,GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-	NCIH460_LUNG	0.02	0.15	0.019	TRUE	3	7	0	3	0	FALSE	ACH-000463
NCIH460_LUNG	PPP1R12C--TSPAN4	1	1	PPP1R12C	8950	chr19:55610152:-	TSPAN4	25714	chr11:862550:+	ONLY_REF_SPLICE	YES	96	1254	0.02	0	0.0095	0.0095	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,TSPAN4->chr11:842808-867116:+,tetraspanin_4	NCIH460_LUNG	0	0.02	0.019	FALSE	0	1	0	1	1	FALSE	ACH-000463
NCIH460_LUNG	PVT1--MYC	1	1	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	202	475	0.01	0	0.0095	0.0095	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	NCIH460_LUNG	0	0.01	0.019	FALSE	3	14	0	24	0	FALSE	ACH-000463
NCIH460_LUNG	RP11-435B5.4--CDK5RAP2	1	1	RP11-435B5.4	2843	chr1:143465380:-	CDK5RAP2	60855	chr9:123165349:-	ONLY_REF_SPLICE	YES	7	589	0.22	0	0.0095	0.0095	RP11-435B5.4->chr1:143354963-143467632:-,CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-	NCIH460_LUNG	0	0.22	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000463
NCIH460_LUNG	RTN3--C7orf26	1	1	RTN3	1333	chr11:63449250:+	C7orf26	26212	chr7:6647591:+	ONLY_REF_SPLICE	NO	887	22	0	0.08	0.0095	0.0095	RTN3->chr11:63448918-63527363:+,reticulon_3,C7orf26->chr7:6629648-6648357:+,chromosome_7_open_reading_frame_26	NCIH460_LUNG	0	0.08	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000463
NCIH460_LUNG	WDR45B--KIF5B	1	1	WDR45B	2355	chr17:80601825:-	KIF5B	34227	chr10:32308887:-	ONLY_REF_SPLICE	YES	297	379	0.01	0.01	0.0095	0.0095	WDR45B->WD_repeat_domain_45B,chr17:80572438-80606429:-,KIF5B->chr10:32297938-32345359:-,kinesin_family_member_5B	NCIH460_LUNG	0.01	0.01	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000463
NCIH460_LUNG	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	4597	183	0	0.01	0.0095	0.0095	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	NCIH460_LUNG	0	0.01	0.019	FALSE	6	50	7	115	0	FALSE	ACH-000463
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	ERBB2IP--SREK1	479	163	ERBB2IP	1332	chr5:65222634:+	SREK1	41566	chr5:65449291:+	ONLY_REF_SPLICE	YES	29	52	0.96	0.93	5.5848	1.9005	NEIGHBORS[57422],ERBB2IP->chr5:65222303-65378377:+,SREK1->chr5:65435799-65479443:+,splicing_regulatory_glutamic_acid/lysine-rich_protein_1	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.93	0.96	7.4853	FALSE	0	2	0	3	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MYO9B--NR2F6	82	26	MYO9B	20393	chr19:17295796:+	NR2F6	49404	chr19:17343435:-	ONLY_REF_SPLICE	YES	31	71	0.78	0.6	0.9561	0.3031	LOCAL_INVERSION:+:-:[17346],MYO9B->chr19:17186591-17325346:+,myosin_IXB,NR2F6->Oncogene{Bushman},chr19:17342692-17356749:-,nuclear_receptor_subfamily_2_group_F_member_6	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.6	0.78	1.2592	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	73	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8511	0.035	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.8861	FALSE	462	80	0	856	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	67	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7812	0.2682	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	1.0494	TRUE	508	994	45	981	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	11	208	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	NO	32	0	0.87	1	0.1283	2.4251	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.87	1	2.5534	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	RP11-49I11.1--AXL	56	27	RP11-49I11.1	1214	chr18:33767198:-	AXL	16713	chr19:41754419:+	ONLY_REF_SPLICE	YES	182	109	0.31	0.43	0.6529	0.3148	RP11-49I11.1->chr18:33759959-33767411:-,AXL->AXL_receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:41725108-41767671:+	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.31	0.43	0.9677	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	207	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	12	1	0.95	1	0.1049	2.4135	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.95	1	2.5184	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	212	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	36	0	0.86	1	0.0816	2.4718	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.86	1	2.5534	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	221	MT-ND4	1937	chrM:11696:+	MT-ND4L	5386	chrM:10477:+	INCL_NON_REF_SPLICE	YES	19308	0	0.01	1	0.035	2.5767	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.01	1	2.6117	FALSE	344	827	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	214	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	32	0	0.87	1	0.035	2.4951	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.87	1	2.5301	FALSE	344	827	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	214	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	33	0	0.87	1	0.035	2.4951	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.87	1	2.5301	FALSE	344	827	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	209	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	27	0	0.89	1	0.0466	2.4368	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.89	1	2.4834	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	205	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	22	0	0.9	1	0.0466	2.3902	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.9	1	2.4368	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	208	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	25	1	0.89	1	0.035	2.4251	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.89	1	2.4601	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	207	MT-ND4	1114	chrM:10873:+	MT-ND4L	5509	chrM:10600:+	INCL_NON_REF_SPLICE	YES	15	1	0.93	1	0.035	2.4135	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.93	1	2.4485	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	52	8	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6063	0.0933	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.6996	FALSE	499	1288	110	792	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	9	158	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	1	0.98	0.99	0.1049	1.8422	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.98	0.99	1.9471	FALSE	344	821	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	179	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	8	0	0.96	1	0.035	2.087	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.96	1	2.122	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	163	MT-ND4	1093	chrM:10852:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	9	0	0.95	1	0.035	1.9005	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.95	1	1.9355	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	156	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	11	0	0.94	1	0.035	1.8189	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.94	1	1.8539	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	7	137	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	75	0	0.66	1	0.0816	1.5973	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.66	1	1.6789	FALSE	344	827	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	147	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	15	0	0.91	1	0.035	1.7139	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.91	1	1.7489	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	141	MT-ND4	1062	chrM:10821:+	MT-ND4L	5516	chrM:10607:+	INCL_NON_REF_SPLICE	YES	3	1	0.98	0.99	0.035	1.644	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.98	0.99	1.679	FALSE	344	821	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	32	23	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	48	0	0.53	1	0.3731	0.2682	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.53	1	0.6413	FALSE	499	1288	110	792	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	37	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4314	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.4314	TRUE	519	3926	326	965	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	34	11	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	18	24	0.71	0.65	0.3964	0.1283	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.65	0.71	0.5247	TRUE	181	1564	124	196	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	VPS13B--RP11-410L14.2	32	6	VPS13B	2814	chr8:100050794:+	RP11-410L14.2	81482	chr8:100009194:-	ONLY_REF_SPLICE	YES	11	14	0.78	0.73	0.3731	0.07	LOCAL_INVERSION:+:-:[222],VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast),RP11-410L14.2->chr8:100008991-100025272:-	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.73	0.78	0.4431	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	32	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	16070	6	0	0.85	0.3731	0.0233	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.85	0.3964	FALSE	230	193	14	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	28	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3265	0.0933	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.4198	FALSE	499	1288	110	792	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	22	31	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10770	0	0	1	0.2565	0.3614	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.6179	FALSE	344	827	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	98	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	37	0	0.73	1	0.0466	1.1426	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.73	1	1.1892	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	96	MT-ND4	1144	chrM:10903:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	22	0	0.82	1	0.0466	1.1193	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.82	1	1.1659	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	STK3--VPS13B	21	24	STK3	11120	chr8:99837743:-	VPS13B	40598	chr8:100050651:+	ONLY_REF_SPLICE	YES	81	12	0.36	0.79	0.2448	0.2798	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Heart_-_Left_Ventricle=1},LOCAL_INVERSION:-:+:[70439],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast)	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.36	0.79	0.5246	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	24	5	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	21932	0	0	1	0.2798	0.0583	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.3381	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	73	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	9	0	0.9	1	0.0583	0.8511	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.9	1	0.9094	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	15	31	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	600	0	0.07	1	0.1749	0.3614	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.07	1	0.5363	FALSE	344	827	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	13	31	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	34	0	0.56	1	0.1516	0.3614	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.56	1	0.513	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	12	33	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	48	0	0.48	1	0.1399	0.3848	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.48	1	0.5247	FALSE	499	1288	110	792	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	63	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0466	0.7345	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.99	1	0.7811	FALSE	344	821	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	17	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19508	11	0	0.66	0.1982	0.0466	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.66	0.2448	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	52	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0.6063	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.6413	FALSE	499	1288	110	792	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	44	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	7519	0	0.01	1	0.0466	0.513	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.5596	FALSE	344	827	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	45	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.035	0.5247	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.98	1	0.5597	FALSE	344	821	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	13	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1516	0.0583	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.2099	FALSE	462	80	0	856	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	44	MT-ND4	1471	chrM:11230:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	513	0	0.08	1	0.035	0.513	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.08	1	0.548	FALSE	344	827	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	13	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16075	11	0	0.58	0.1516	0.0233	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.58	0.1749	FALSE	230	198	14	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	33	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	40	0	0.49	1	0.0583	0.3848	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.49	1	0.4431	FALSE	499	1288	110	792	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	HSP90AB1--MT-RNR2	12	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1651	0	0.01	1	0.1399	0.0117	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.1516	FALSE	13	9	0	364	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	7	21	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0816	0.2448	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.3264	FALSE	499	1288	110	792	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	9	11	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	18613	0	0	1	0.1049	0.1283	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.2332	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	30	MT-ND4	1170	chrM:10929:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	31	0	0.52	1	0.0466	0.3498	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.52	1	0.3964	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	9	8	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	17922	252	0	0.06	0.1049	0.0933	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.06	0.1982	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	9	7	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	9248	625	0	0.02	0.1049	0.0816	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.02	0.1865	FALSE	231	215	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	31	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	36	0	0.49	1	0.035	0.3614	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.49	1	0.3964	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	31	MT-ND6	1196	chrM:14478:-	MT-TE	4557	chrM:14711:-	INCL_NON_REF_SPLICE	YES	47	0	0.42	1	0.035	0.3614	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.42	1	0.3964	FALSE	499	1288	110	792	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	31	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	47	0	0.42	1	0.035	0.3614	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.42	1	0.3964	FALSE	499	1288	110	792	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	10	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16183	96	0	0.11	0.1166	0.0233	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.11	0.1399	FALSE	230	198	14	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	30	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	28	0	0.54	1	0.035	0.3498	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.54	1	0.3848	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	17	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	9	0	0.72	1	0.07	0.1982	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.72	1	0.2682	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	8	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	26	19	0.38	0.46	0.0933	0.0933	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.38	0.46	0.1866	TRUE	267	562	48	632	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	10	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1166	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.1166	FALSE	351	233	23	137	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	8	5	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	20609	0	0	1	0.0933	0.0583	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.1516	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	25	MT-ND6	1148	chrM:14526:-	MT-TE	4559	chrM:14709:-	INCL_NON_REF_SPLICE	YES	53	0	0.35	1	0.035	0.2915	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.35	1	0.3265	FALSE	499	1288	110	792	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	25	MT-ND6	1159	chrM:14515:-	MT-TE	4559	chrM:14709:-	INCL_NON_REF_SPLICE	YES	52	0	0.35	1	0.035	0.2915	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.35	1	0.3265	FALSE	499	1288	110	792	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	6	11	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	33	0	0.34	1	0.07	0.1283	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.34	1	0.1983	FALSE	344	826	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	23	MT-ND6	1199	chrM:14475:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	47	0	0.36	1	0.035	0.2682	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.36	1	0.3032	FALSE	499	1288	110	792	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	7	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0816	0.07	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.1516	FALSE	462	80	0	856	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	8	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0933	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0933	FALSE	344	821	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	20	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0.2332	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.2682	FALSE	499	1288	110	792	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	8	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0933	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0933	TRUE	465	1949	224	605	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	9	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	19785	0	0	1	0.0583	0.1049	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.1632	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	6	5	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	20672	0	0	1	0.07	0.0583	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.1283	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	13	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	3	0	0.85	1	0.0466	0.1516	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.85	1	0.1982	FALSE	209	205	15	279	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	7	1	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15866	11	0	0.42	0.0816	0.0117	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.42	0.0933	FALSE	230	193	14	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	12	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	17489	0	0	1	0.0466	0.1399	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.1865	FALSE	231	215	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	6	4	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	19472	1718	0	0.01	0.07	0.0466	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.1166	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	RP11-479O16.1--MSMO1	7	0	RP11-479O16.1	5346	chr5:58037747:-	MSMO1	15454	chr4:166263475:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0816	0	RP11-479O16.1->chr5:58037408-58112926:-,MSMO1->chr4:166248775-166264312:+,methylsterol_monooxygenase_1	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0816	TRUE	0	0	0	5	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	C15orf57--CBX3	6	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	25	19	0.26	0.32	0.07	0.035	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.26	0.32	0.105	TRUE	267	562	48	632	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	15	MT-ND4	2302	chrM:12061:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	12	0	0.6	1	0.035	0.1749	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.6	1	0.2099	FALSE	209	205	15	279	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	6	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18446	11	0	0.45	0.07	0.035	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.45	0.105	FALSE	231	205	14	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	7	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	19574	0	0	1	0.0583	0.0816	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.1399	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	11	MT-ND4	2232	chrM:11991:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	4784	3	0	0.83	0.0466	0.1283	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.83	0.1749	FALSE	216	209	16	281	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	6	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	29324	chr12:66788132:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.07	0.0233	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0933	FALSE	0	0	0	1	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1645	0	0	1	0.07	0.0117	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.0817	FALSE	13	9	0	364	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	20709	0	0	1	0.0583	0.0583	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.1166	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	ERBB2IP--SREK1	1	20	ERBB2IP	1332	chr5:65222634:+	SREK1	46048	chr5:65455047:+	ONLY_REF_SPLICE	YES	29	166	0.42	0.11	0.0117	0.2332	NEIGHBORS[57422],ERBB2IP->chr5:65222303-65378377:+,SREK1->chr5:65435799-65479443:+,splicing_regulatory_glutamic_acid/lysine-rich_protein_1	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.11	0.42	0.2449	FALSE	0	0	0	1	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	8	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17922	96	0	0.11	0.0466	0.0933	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.11	0.1399	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	8	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	6148	96	0	0.11	0.0466	0.0933	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.11	0.1399	FALSE	218	210	16	281	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	4	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22634	96	0	0.09	0.0583	0.0466	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.09	0.1049	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	JUP--MT-CO3	5	3	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	622	23095	0.01	0	0.0583	0.035	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0933	FALSE	0	0	0	33	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	11	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	19499	0	0	1	0.035	0.1283	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.1633	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	5	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	16070	0	0	1	0.0583	0.035	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.0933	FALSE	230	193	14	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	11	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	19464	0	0	1	0.035	0.1283	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.1633	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	PLEKHA1--LRP6	5	3	PLEKHA1	6220	chr10:124152857:+	LRP6	33366	chr12:12356334:-	ONLY_REF_SPLICE	YES	37	8	0.18	0.5	0.0583	0.035	PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1,LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.18	0.5	0.0933	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	5	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0583	0.035	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0933	FALSE	416	2512	207	587	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	6	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	NO	19519	551	0	0.02	0.0466	0.07	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.02	0.1166	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	10	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	64	0	0.17	1	0.035	0.1166	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.17	1	0.1516	FALSE	344	827	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	5	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.86	0.0583	0.0117	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.86	1	0.07	FALSE	344	821	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	9	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	26	0	0.32	1	0.035	0.1049	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.32	1	0.1399	FALSE	499	1288	110	792	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	4	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0466	0.0583	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.1049	FALSE	407	2205	196	549	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	AC104389.28--HBG1	5	0	AC104389.28	1084	chr11:5526799:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0583	0	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0583	FALSE	0	1	0	13	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	8	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17374	96	0	0.1	0.035	0.0933	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.1	0.1283	FALSE	231	215	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	4	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	18821	2094	0	0	0.0466	0.0466	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0	0.0932	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	4	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21880	96	0	0.08	0.0466	0.0466	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.08	0.0932	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0583	FALSE	499	1288	110	792	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0583	FALSE	462	80	0	856	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	7	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	19611	947	0	0.01	0.035	0.0816	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.1166	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	3	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	16462	0	0	1	0.0466	0.035	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.0816	FALSE	231	204	14	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16070	11	0	0.35	0.0466	0.0233	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.35	0.0699	FALSE	230	193	14	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	6	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	19348	0	0	1	0.035	0.07	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.105	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	6	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19097	0	0	1	0.035	0.07	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.105	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	2	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0.0233	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0699	FALSE	462	80	0	856	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	4	1	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	16643	604	0	0.01	0.0466	0.0117	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0583	FALSE	231	204	14	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	5	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	20609	0	0	1	0.035	0.0583	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.0933	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	5	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	20745	0	0	1	0.035	0.0583	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.0933	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	1	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0.0117	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0583	FALSE	499	1288	110	792	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	3	5	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0.0583	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0933	FALSE	462	80	0	856	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	11	1	0.31	0.0466	0.0117	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.31	1	0.0583	TRUE	458	1351	185	561	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	SUMO3--WRB	4	1	SUMO3	1832	chr21:46237863:-	WRB	15959	chr21:40763695:+	ONLY_REF_SPLICE	YES	31	70	0.14	0.07	0.0466	0.0117	SUMO3->chr21:46225532-46238694:-,small_ubiquitin-like_modifier_3,WRB->chr21:40752170-40800454:+,tryptophan_rich_basic_protein	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.07	0.14	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	APP--MT-ND2	4	0	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0466	FALSE	0	1	0	51	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	4	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	YES	16313	0	0	1	0.035	0.0466	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.0816	FALSE	231	204	14	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	4	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	16325	0	0	1	0.035	0.0466	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	1	0.0816	FALSE	231	204	14	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	4	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	19380	1078	0	0.01	0.035	0.0466	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0816	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0466	FALSE	344	821	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MTND4P12--MTATP6P1	4	0	MTND4P12	1756	chr5:134262971:-	MTATP6P1	5665	chr1:569363:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0466	0	GTEx_FI:{Heart=[count:14=pct:5.6],Brain=[count:8=pct:1.2],Muscle=[count:3=pct:1.3],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Kidney=[count:1=pct:7.1],Small_Intestine=[count:1=pct:1.8]},MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0466	TRUE	27	31	5	8	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	3	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.035	0.0466	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0816	FALSE	515	4851	409	746	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	3	MT-ND4	1452	chrM:11211:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	21446	11	0	0.35	0.035	0.035	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.35	0.07	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	3	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	21554	6	0	0.5	0.035	0.035	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.5	0.07	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	3	MT-ND4	1510	chrM:11269:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	21326	11	0	0.35	0.035	0.035	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.35	0.07	FALSE	231	217	16	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	BBS9--FKBP9	3	2	BBS9	7370	chr7:33217203:+	FKBP9	46072	chr7:33035775:+	ONLY_REF_SPLICE	YES	10	184	0.33	0.03	0.035	0.0233	{Klijn_CCL:Head-Neck=1},BBS9->Bardet-Biedl_syndrome_9,chr7:33168856-33645680:+,FKBP9->FK506_binding_protein_9,chr7:32997017-33046543:+	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.03	0.33	0.0583	TRUE	0	0	0	1	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	DPYD--RP11-272L13.3	3	2	DPYD	13320	chr1:98144651:-	RP11-272L13.3	34586	chr1:98407296:-	INCL_NON_REF_SPLICE	YES	21	0	0.19	1	0.035	0.0233	LOCAL_REARRANGEMENT:-:[12425],DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,RP11-272L13.3->chr1:98399030-98407302:-	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.19	1	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	16989	2115	0	0	0.035	0.0233	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0	0.0583	FALSE	231	204	14	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	2	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	NO	16312	625	0	0.01	0.035	0.0233	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0583	FALSE	231	204	14	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ATP8	3	1	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	NO	10251	625	0	0.01	0.035	0.0117	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0467	FALSE	230	193	14	283	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	1	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0.0117	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0467	FALSE	499	1288	110	792	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0233	0.0583	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0816	FALSE	192	492	57	212	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	DST--MYO16	2	4	DST	13246	chr6:56564451:-	MYO16	130438	chr13:109318234:+	ONLY_REF_SPLICE	YES	12	0	0.33	1	0.0233	0.0466	DST->Oncogene{Bushman},chr6:56322785-56819426:-,dystonin,MYO16->chr13:109248500-109860355:+,myosin_XVI	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.33	1	0.0699	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND2--MT-RNR2	3	0	MT-ND2	1462	chrM:4931:+	MT-RNR2	5625	chrM:2253:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	LOCAL_REARRANGEMENT:+:[1241],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.035	FALSE	19	92	8	6	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	3	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.035	FALSE	351	233	23	137	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND3--MT-ATP8	3	0	MT-ND3	1270	chrM:10328:+	MT-ATP8	4454	chrM:8473:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.035	FALSE	351	233	23	137	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	MT-ND4--MT-ND4L	3	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.035	FALSE	344	821	44	306	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0.0466	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0699	FALSE	467	2173	244	435	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	STK3--VPS13B	1	8	STK3	11120	chr8:99837743:-	VPS13B	41742	chr8:100108540:+	ONLY_REF_SPLICE	NO	81	14	0.1	0.39	0.0117	0.0933	GTEx&tcga_normals:4/3694=0.11%,GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Heart_-_Left_Ventricle=1},LOCAL_INVERSION:-:+:[70439],STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3,VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast)	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.1	0.39	0.105	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	KANSL1--ARL17B	1	6	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	28	24	0.2	0.23	0.0117	0.07	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.2	0.23	0.0817	TRUE	105	90	7	93	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	DPYD--RP11-272L13.3	2	1	DPYD	13320	chr1:98144651:-	RP11-272L13.3	35754	chr1:98399725:-	ONLY_REF_SPLICE	YES	21	1	0.12	0.75	0.0233	0.0117	LOCAL_REARRANGEMENT:-:[12425],DPYD->chr1:97543299-98386605:-,dihydropyrimidine_dehydrogenase,RP11-272L13.3->chr1:98399030-98407302:-	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.12	0.75	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	SMYD3--RP11-439E19.8	2	1	SMYD3	1259	chr1:246670356:-	RP11-439E19.8	40216	chr1:246963073:-	ONLY_REF_SPLICE	YES	29	0	0.09	1	0.0233	0.0117	SMYD3->Oncogene{Bushman},SET_and_MYND_domain_containing_3,chr1:245912642-246670614:-,RP11-439E19.8->chr1:246935139-246993361:-	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.09	1	0.035	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	STK39--RPE	2	0	STK39	6334	chr2:169018297:-	RPE	26824	chr2:210880697:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39,RPE->chr2:210867289-210886300:+,ribulose-5-phosphate-3-epimerase	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	TBC1D19--RBPJ	2	0	TBC1D19	10043	chr4:26641809:+	RBPJ	47147	chr4:26417097:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	TBC1D19->TBC1_domain_family_member_19,chr4:26578059-26756973:+,RBPJ->chr4:26165077-26436541:+,recombination_signal_binding_protein_for_immunoglobulin_kappa_J_region	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	WDR53--SDHAP1	2	0	WDR53	2670	chr3:196293748:-	SDHAP1	25131	chr3:195686957:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	WDR53->WD_repeat_domain_53,chr3:196281056-196295545:-,SDHAP1->chr3:195686619-195717189:-,succinate_dehydrogenase_complex_flavoprotein_subunit_A_pseudogene_1	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	ZNF317--CDK5RAP2	2	0	ZNF317	1213	chr19:9251268:+	CDK5RAP2	13760	chr9:123334319:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ZNF317->chr19:9251056-9274100:+,zinc_finger_protein_317,CDK5RAP2->CDK5_regulatory_subunit_associated_protein_2,chr9:123151147-123342448:-	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	NMT1--ARHGAP44	1	3	NMT1	2262	chr17:43138828:+	ARHGAP44	28335	chr17:12823072:+	ONLY_REF_SPLICE	NO	172	3	0.02	0.57	0.0117	0.035	NMT1->N-myristoyltransferase_1,Oncogene{Bushman},chr17:43128978-43186384:+,ARHGAP44->Rho_GTPase_activating_protein_44,chr17:12692856-12894960:+	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.02	0.57	0.0467	TRUE	0	0	0	1	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	RP11-49I11.1--AXL	1	2	RP11-49I11.1	1214	chr18:33767198:-	AXL	18020	chr19:41758256:+	ONLY_REF_SPLICE	YES	182	148	0.02	0.02	0.0117	0.0233	RP11-49I11.1->chr18:33759959-33767411:-,AXL->AXL_receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr19:41725108-41767671:+	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.02	0.02	0.035	TRUE	0	0	0	1	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	ATR--U2SURP	1	1	ATR	3414	chr3:142284963:-	U2SURP	75627	chr3:142751626:+	ONLY_REF_SPLICE	YES	25	184	0.07	0.01	0.0117	0.0117	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Vagina=1},ATR->ATR_serine/threonine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:142168077-142297668:-,U2SURP->U2_snRNP_associated_SURP_domain_containing,chr3:142683339-142779567:+	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.01	0.07	0.0234	FALSE	0	10	0	10	7	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	CLSTN3--MRPS5	1	1	CLSTN3	15868	chr12:7303659:+	MRPS5	33867	chr2:95767468:-	ONLY_REF_SPLICE	YES	49	106	0.04	0.02	0.0117	0.0117	CLSTN3->calsyntenin_3,chr12:7282294-7311541:+,MRPS5->chr2:95752952-95815179:-,mitochondrial_ribosomal_protein_S5	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.02	0.04	0.0234	TRUE	0	0	0	1	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	GPATCH8--PPM1D	1	1	GPATCH8	2180	chr17:42552197:-	PPM1D	28191	chr17:58711214:+	ONLY_REF_SPLICE	NO	30	21	0.06	0.09	0.0117	0.0117	GPATCH8->G-patch_domain_containing_8,chr17:42472652-42580798:-,PPM1D->Oncogene{Bushman},chr17:58677544-58741849:+,protein_phosphatase,_Mg2+/Mn2+_dependent_1D	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.06	0.09	0.0234	TRUE	0	0	0	1	0	FALSE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	LRP6--PLEKHA1	1	1	LRP6	2726	chr12:12397196:-	PLEKHA1	40097	chr10:124152697:+	ONLY_REF_SPLICE	NO	8	11	0.2	0.15	0.0117	0.0117	LRP6->LDL_receptor_related_protein_6,chr12:12268959-12419946:-,PLEKHA1->chr10:124134212-124191867:+,pleckstrin_homology_domain_containing_A1	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.15	0.2	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000619
PECAPJ15_UPPER_AERODIGESTIVE_TRACT	SBNO2--CNN2	1	1	SBNO2	6949	chr19:1147308:-	CNN2	32718	chr19:1036129:+	ONLY_REF_SPLICE	YES	91	318	0.02	0.01	0.0117	0.0117	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Blood=[count:3=pct:1.7],Whole_Blood=[count:3=pct:2.3],Spleen=[count:1=pct:0.9],Colon=[count:1=pct:0.5],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=5,Lung=2,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1},LOCAL_INVERSION:-:+:[68568],SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),CNN2->calponin_2,chr19:1026298-1039068:+	PECAPJ15_UPPER_AERODIGESTIVE_TRACT	0.01	0.02	0.0234	FALSE	4	1	0	1	0	FALSE	ACH-000619
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	160	40	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	1.8029	0.4507	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.2536	TRUE	508	994	45	981	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	84	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	217	7	0.29	0.93	0.9465	0.0338	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.93	0.9803	TRUE	519	3926	326	965	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	57	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6423	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6423	FALSE	369	2501	205	193	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--MT-ND5	55	1	IGH@	97384	chr14:106321310:-	MT-ND5	131849	chrM:12384:+	INCL_NON_REF_SPLICE	YES	9047	0	0.01	1	0.6197	0.0113	IGH@->Oncogene{Bushman},MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.631	FALSE	0	0	0	2	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	50	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5634	0.0338	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5972	FALSE	499	1288	110	792	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	135	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	6	1	0.96	0.99	0.0676	1.5212	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.99	1.5888	FALSE	344	826	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	136	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	11	0	0.93	1	0.0563	1.5324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	1.5887	FALSE	344	826	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	13	103	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	2328	0	0.05	1	0.1465	1.1606	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	1.3071	FALSE	344	827	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	134	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	7	0	0.95	1	0.0451	1.5099	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	1.555	FALSE	344	826	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	12	101	MT-ND4	1386	chrM:11145:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	39	0	0.74	1	0.1352	1.1381	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	1.2733	FALSE	344	827	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	134	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	6	0	0.96	1	0.0338	1.5099	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	1.5437	FALSE	344	826	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	36	2	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1395	1	0.03	0.4056	0.0225	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.4281	FALSE	101	855	57	72	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	7	94	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	1	0.96	0.99	0.0789	1.0592	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.99	1.1381	FALSE	344	821	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	29	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3268	0.0113	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3381	FALSE	462	80	0	856	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	104	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	6	0	0.95	1	0.0338	1.1719	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	1.2057	FALSE	344	826	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	104	MT-ND4	1190	chrM:10949:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	11	0	0.91	1	0.0338	1.1719	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	1.2057	FALSE	344	826	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EXOSC10--RP11-435B5.3	27	4	EXOSC10	3422	chr1:11155815:-	RP11-435B5.3	33845	chr1:143364849:+	ONLY_REF_SPLICE	YES	32	1	0.49	0.97	0.3042	0.0451	EXOSC10->chr1:11126675-11159938:-,exosome_component_10,RP11-435B5.3->chr1:143347958-143376829:+	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.97	0.3493	TRUE	0	0	0	1	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	91	MT-ND4	1503	chrM:11262:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	158	0	0.37	1	0.0338	1.0254	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	1	1.0592	FALSE	344	827	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	75	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	NO	7	0	0.92	1	0.0563	0.8451	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.9014	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	75	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	7	0	0.92	1	0.0563	0.8451	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.9014	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	78	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	12	0	0.87	1	0.0451	0.8789	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	0.924	FALSE	344	826	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	62	MT-CO3	1434	chrM:9640:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	6	5	0.92	0.93	0.0789	0.6986	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	0.93	0.7775	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	19	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.2141	0.1239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.338	FALSE	499	1288	110	792	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	58	MT-CO3	1083	chrM:9289:+	MT-ATP6	4916	chrM:8658:+	INCL_NON_REF_SPLICE	YES	2	21	0.97	0.76	0.0789	0.6535	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.97	0.7324	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	58	MT-CO3	1083	chrM:9289:+	MT-ATP6	4902	chrM:8644:+	INCL_NON_REF_SPLICE	YES	2	5	0.97	0.93	0.0789	0.6535	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.97	0.7324	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	62	MT-CO3	1220	chrM:9426:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	7	3	0.91	0.96	0.0676	0.6986	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.96	0.7662	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	62	MT-CO3	1666	chrM:9872:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.93	0.0676	0.6986	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.7662	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	7	53	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0789	0.5972	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6761	FALSE	369	2501	205	193	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	55	MT-CO3	1083	chrM:9289:+	MT-ATP6	5173	chrM:8915:+	INCL_NON_REF_SPLICE	YES	2	39	0.97	0.61	0.0676	0.6197	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.61	0.97	0.6873	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	62	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	12	5	0.85	0.93	0.0451	0.6986	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.93	0.7437	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	19	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2141	0.0113	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2254	FALSE	46	201	11	112	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	59	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	5	5	0.93	0.93	0.0451	0.6648	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.93	0.7099	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	63	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	4	52	0.94	0.56	0.0338	0.7099	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.56	0.94	0.7437	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	58	MT-CO3	1105	chrM:9311:+	MT-ATP6	5163	chrM:8905:+	INCL_NON_REF_SPLICE	YES	2	34	0.97	0.65	0.0451	0.6535	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.97	0.6986	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	17	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1916	0.0451	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2367	FALSE	499	1288	110	792	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	57	MT-CO3	1123	chrM:9329:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	5	0.97	0.92	0.0338	0.6423	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	0.97	0.6761	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	53	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	2	3	0.97	0.95	0.0451	0.5972	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	0.97	0.6423	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	17	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1916	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1916	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	55	MT-CO3	1089	chrM:9295:+	MT-ATP6	5156	chrM:8898:+	INCL_NON_REF_SPLICE	YES	2	33	0.97	0.64	0.0338	0.6197	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.97	0.6535	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	11	23	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1239	0.2592	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3831	FALSE	369	2501	205	193	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	53	MT-CO3	1072	chrM:9278:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0338	0.5972	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	0.631	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	7	33	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0.3718	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4507	FALSE	369	2501	205	193	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	15	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.169	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.169	FALSE	369	2501	205	193	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	46	MT-ND4	1125	chrM:10884:+	MT-ND4L	5651	chrM:10742:+	INCL_NON_REF_SPLICE	YES	7	0	0.88	1	0.0338	0.5183	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.5521	FALSE	344	826	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	14	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1578	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1578	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	32	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	11	0	0.78	1	0.0676	0.3606	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.4282	FALSE	344	826	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	27	MT-CO3	1035	chrM:9241:+	MT-ATP6	5316	chrM:9058:+	INCL_NON_REF_SPLICE	YES	2	4	0.94	0.89	0.0789	0.3042	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	0.94	0.3831	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	12	6	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	4	1	0.82	0.95	0.1352	0.0676	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	0.95	0.2028	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	33	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	197	0	0.16	1	0.0563	0.3718	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.4281	FALSE	344	827	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	13	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1465	0.0113	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1578	FALSE	462	80	0	856	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	13	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1465	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1465	FALSE	369	2501	205	193	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	8	19	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	4	1	0.87	0.96	0.0901	0.2141	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	0.96	0.3042	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	12	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	6	0	0.71	1	0.1352	0.0338	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.169	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	8	19	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	11	0	0.71	1	0.0901	0.2141	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.3042	FALSE	344	826	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	35	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0.3944	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4395	FALSE	369	2501	205	193	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	10	8	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	21	0	0.46	1	0.1127	0.0901	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	1	0.2028	FALSE	344	827	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1352	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1352	TRUE	46	1352	75	139	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	7	18	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0789	0.2028	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2817	FALSE	369	2501	205	193	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	24	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.0563	0.2704	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.3267	FALSE	344	821	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	11	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1239	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1239	FALSE	101	855	57	72	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	10	4	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1127	0.0451	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1578	TRUE	13	49	2	38	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	30	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0.338	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3718	FALSE	344	821	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	10	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	20	0	0.35	1	0.1127	0.0113	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	1	0.124	FALSE	272	151	14	158	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	20	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	10	0	0.71	1	0.0563	0.2254	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.2817	FALSE	344	826	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	19	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8	0	0.75	1	0.0563	0.2141	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.2704	FALSE	344	826	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	9	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1014	0.0225	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1239	FALSE	462	80	0	856	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	20	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0451	0.2254	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.2705	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	9	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1014	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1014	TRUE	22	156	2	142	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	15	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	11	0	0.65	1	0.0563	0.169	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	0.2253	FALSE	344	826	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAOK1--TTLL6	8	2	TAOK1	1561	chr17:27718042:+	TTLL6	52917	chr17:46868965:-	ONLY_REF_SPLICE	YES	7	0	0.59	1	0.0901	0.0225	TAOK1->TAO_kinase_1,chr17:27717482-27878922:+,TTLL6->chr17:46839597-46894576:-,tubulin_tyrosine_ligase_like_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.1126	TRUE	0	0	0	1	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	21	MT-CO3	1020	chrM:9226:+	MT-ATP6	5229	chrM:8971:+	INCL_NON_REF_SPLICE	YES	1	5	0.96	0.83	0.0338	0.2366	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.96	0.2704	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	8	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0901	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0901	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	19	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	7	0	0.76	1	0.0338	0.2141	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	1	0.2479	FALSE	344	826	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-156P1.3--GOSR1	7	3	RP11-156P1.3	10988	chr17:45110644:-	GOSR1	31452	chr17:28819697:+	ONLY_REF_SPLICE	YES	0	67	1	0.13	0.0789	0.0338	RP11-156P1.3->chr17:45061411-45177689:-,GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.1127	TRUE	0	0	0	1	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	5	8	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	11	0	0.54	1	0.0563	0.0901	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	1	0.1464	FALSE	344	826	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	11	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0.1239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.169	FALSE	499	1288	110	792	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	14	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0338	0.1578	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1916	FALSE	499	1288	110	792	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	6	0	IGH@	97649	chr14:106321045:-	TMSB4X	131824	chrX:12993249:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0676	0	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0676	TRUE	0	0	0	6	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	4	1	0.69	0.9	0.0563	0.0451	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	0.9	0.1014	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	4	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.64	0.0563	0.0451	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	1	0.1014	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0676	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0676	FALSE	369	2501	205	193	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	5	2	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	1371	1	0.01	0.0563	0.0225	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0788	FALSE	101	855	57	72	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	5	1	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0563	0.0113	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0676	FALSE	369	2501	205	193	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	8	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	21	0	0.34	1	0.0338	0.0901	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	1	0.1239	FALSE	344	827	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0563	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0563	TRUE	465	1949	224	605	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0451	0.0225	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.0676	FALSE	407	2205	196	549	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--TMSB4X	4	0	IGH@	97640	chr14:106321054:-	TMSB4X	131816	chrX:12993241:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	IGH@->Oncogene{Bushman},TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0451	TRUE	0	0	0	6	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1024	chrM:9230:+	MT-ATP6	5461	chrM:9203:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0451	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	4	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	10	1	0.41	0.88	0.0338	0.0451	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.88	0.0789	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	4	MT-CO3	1090	chrM:9296:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	2	1	0.78	0.88	0.0338	0.0451	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.88	0.0789	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0451	FALSE	344	821	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0451	FALSE	344	821	44	306	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0451	FALSE	499	1288	110	792	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0451	FALSE	499	1288	110	792	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0451	FALSE	369	2501	205	193	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0451	FALSE	369	2501	205	193	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	3	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	10	0	0.38	1	0.0338	0.0338	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.0676	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	2	MT-CO3	1158	chrM:9364:+	MT-ATP6	5461	chrM:9203:+	INCL_NON_REF_SPLICE	NO	9	0	0.36	1	0.0338	0.0225	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	1	0.0563	FALSE	189	492	56	216	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	3	2	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	2321	1	0	0.0338	0.0225	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0563	FALSE	101	855	57	72	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.83	0.83	0.0338	0.0225	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.83	0.0563	FALSE	515	4851	409	746	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EXOSC10--RP11-435B5.3	3	1	EXOSC10	3422	chr1:11155815:-	RP11-435B5.3	36147	chr1:143370995:+	ONLY_REF_SPLICE	YES	32	1	0.11	0.8	0.0338	0.0113	EXOSC10->chr1:11126675-11159938:-,exosome_component_10,RP11-435B5.3->chr1:143347958-143376829:+	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.8	0.0451	TRUE	0	0	0	1	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-ND5	3	1	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	362	1	0.01	0.0338	0.0113	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0451	FALSE	101	855	57	72	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	1	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0.0113	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0451	FALSE	462	80	0	856	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-156P1.3--GOSR1	3	1	RP11-156P1.3	7452	chr17:45133826:-	GOSR1	31452	chr17:28819697:+	ONLY_REF_SPLICE	YES	34	67	0.11	0.06	0.0338	0.0113	RP11-156P1.3->chr17:45061411-45177689:-,GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.11	0.0451	TRUE	0	0	0	1	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	3	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0338	0.0113	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0451	TRUE	62	24	1	171	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	3	0	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	8873	chr5:97235342:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0338	0	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0338	TRUE	0	1	0	5	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.5	0.0225	0.0113	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0338	TRUE	458	1351	185	561	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	B2M--GNAS	2	0	B2M	1137	chr15:45003811:+	GNAS	25752	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Whole_Blood=[count:8=pct:6.1],Blood=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6],Lung=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=18;pct=0.21%;dist=Whole_Blood=9,Lung=3,Pancreas=1,Minor_Salivary_Gland=1,Thyroid=1,Cells_-_EBV-transformed_lymphocytes=1,Muscle_-_Skeletal=1,Colon_-_Transverse=1},B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	14	13	1	7	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EXOSC10--RP11-435B5.3	1	4	EXOSC10	3422	chr1:11155815:-	RP11-435B5.3	33687	chr1:143364691:+	ONLY_REF_SPLICE	NO	32	1	0.14	0.83	0.0113	0.0451	EXOSC10->chr1:11126675-11159938:-,exosome_component_10,RP11-435B5.3->chr1:143347958-143376829:+	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.83	0.0564	TRUE	0	0	0	1	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SFXN4--AKR1A1	2	0	SFXN4	3607	chr10:120921852:-	AKR1A1	19001	chr1:46027461:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	SFXN4->chr10:120900279-120925179:-,sideroflexin_4,AKR1A1->aldo-keto_reductase_family_1,_member_A1_(aldehyde_reductase),chr1:46016215-46035721:+	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNIP1--SYNPO	2	0	TNIP1	2716	chr5:150466646:-	SYNPO	34735	chr5:150027506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	TNIP1->TNFAIP3_interacting_protein_1,chr5:150409506-150473138:-,SYNPO->chr5:149980642-150038782:+,synaptopodin	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YWHAE--UBE2J2	2	0	YWHAE	1332	chr17:1303341:-	UBE2J2	17381	chr1:1203372:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,UBE2J2->chr1:1189289-1209265:-,ubiquitin_conjugating_enzyme_E2_J2	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTR3C--RP11-728K20.1	1	2	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	18809	chr7:149589487:-	ONLY_REF_SPLICE	NO	4	0	0.43	1	0.0113	0.0225	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	1	0.0338	TRUE	0	3	0	4	2	TRUE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARF3--PPM1G	1	1	ARF3	6942	chr12:49333438:-	PPM1G	15260	chr2:27610025:-	ONLY_REF_SPLICE	YES	105	230	0.02	0.01	0.0113	0.0113	ARF3->ADP_ribosylation_factor_3,chr12:49329506-49351334:-,PPM1G->chr2:27604061-27632554:-,protein_phosphatase,_Mg2+/Mn2+_dependent_1G	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	1	1	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0113	0.0113	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	67	49	0	25	0	FALSE	ACH-000073
GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RAB30-AS1--PICALM	1	1	RAB30-AS1	1637	chr11:82783744:+	PICALM	27993	chr11:85692271:-	ONLY_REF_SPLICE	YES	31	78	0.06	0.03	0.0113	0.0113	RAB30-AS1->RAB30_antisense_RNA_1_(head_to_head),chr11:82783108-82817761:+,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	GRANTA519_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.06	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000073
JHUEM3_ENDOMETRIUM	SLC20A2--NECAB1	153	51	SLC20A2	1389	chr8:42396681:-	NECAB1	33977	chr8:91929720:+	ONLY_REF_SPLICE	YES	55	1	0.79	1	1.9979	0.666	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,NECAB1->N-terminal_EF-hand_calcium_binding_protein_1,chr8:91803778-91971636:+	JHUEM3_ENDOMETRIUM	0.79	1	2.6639	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	FAM49B--SULF1	132	7	FAM49B	1760	chr8:131028616:-	SULF1	36422	chr8:70414109:+	ONLY_REF_SPLICE	YES	0	12	1	0.92	1.7237	0.0914	FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,SULF1->chr8:70378859-70573150:+,sulfatase_1	JHUEM3_ENDOMETRIUM	0.92	1	1.8151	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	HDGFRP2--DDX19B	108	37	HDGFRP2	1136	chr19:4472419:+	DDX19B	21453	chr16:70346512:+	ONLY_REF_SPLICE	YES	28	88	0.84	0.62	1.4103	0.4832	HDGFRP2->chr19:4472284-4502223:+,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	JHUEM3_ENDOMETRIUM	0.62	0.84	1.8935	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CHD7--MED30	96	21	CHD7	6284	chr8:61693989:+	MED30	44975	chr8:118540890:+	ONLY_REF_SPLICE	YES	4	63	0.97	0.65	1.2536	0.2742	CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7,MED30->chr8:118532952-118552501:+,mediator_complex_subunit_30	JHUEM3_ENDOMETRIUM	0.65	0.97	1.5278	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	TIMM23B--LINC00843	87	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.1361	0.3395	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	JHUEM3_ENDOMETRIUM	0.99	1	1.4756	TRUE	508	994	45	981	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	FAM49B--NKAIN3	70	27	FAM49B	15806	chr8:130874475:-	NKAIN3	31750	chr8:63492098:+	ONLY_REF_SPLICE	YES	148	0	0.4	1	0.9141	0.3526	FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,NKAIN3->Na+/K+_transporting_ATPase_interacting_3,chr8:63161150-63912211:+	JHUEM3_ENDOMETRIUM	0.4	1	1.2667	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CPQ--PRKDC	68	24	CPQ	7410	chr8:97797558:+	PRKDC	99686	chr8:48696370:-	ONLY_REF_SPLICE	YES	41	212	0.69	0.3	0.888	0.3134	CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide	JHUEM3_ENDOMETRIUM	0.3	0.69	1.2014	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	MED30--NCALD	67	19	MED30	1341	chr8:118533292:+	NCALD	29579	chr8:102731876:-	ONLY_REF_SPLICE	YES	58	7	0.6	0.92	0.8749	0.2481	MED30->chr8:118532952-118552501:+,mediator_complex_subunit_30,NCALD->chr8:102698771-103137135:-,neurocalcin_delta	JHUEM3_ENDOMETRIUM	0.6	0.92	1.123	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	TIMM23--RP11-464F9.1	53	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	146	1	0.27	0.98	0.6921	0.0261	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	JHUEM3_ENDOMETRIUM	0.27	0.98	0.7182	TRUE	519	3926	326	965	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-TA--MT-TC	46	10	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6007	0.1306	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM3_ENDOMETRIUM	1	1	0.7313	FALSE	462	80	0	856	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	HDGFRP2--DDX19B	37	42	HDGFRP2	1136	chr19:4472419:+	DDX19B	20288	chr16:70333093:+	INCL_NON_REF_SPLICE	YES	28	2	0.74	0.98	0.4832	0.5485	HDGFRP2->chr19:4472284-4502223:+,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	JHUEM3_ENDOMETRIUM	0.74	0.98	1.0317	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CA8--FAM110B	38	13	CA8	2557	chr8:61192248:-	FAM110B	24759	chr8:59058466:+	ONLY_REF_SPLICE	YES	10	5	0.84	0.91	0.4962	0.1698	CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-,FAM110B->chr8:58907068-59116838:+,family_with_sequence_similarity_110_member_B	JHUEM3_ENDOMETRIUM	0.84	0.91	0.666	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	DPH7--PTP4A3	39	0	DPH7	1297	chr9:140473091:-	PTP4A3	14726	chr8:142431487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5093	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:10=pct:2.7],Heart=[count:7=pct:2.8],Pituitary=[count:4=pct:7.7],Nerve=[count:2=pct:1.2],Esophagus=[count:2=pct:0.5],Colon=[count:2=pct:1.0],Lung=[count:2=pct:1.2],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Kidney=[count:1=pct:7.1],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},GTEx_v2:{count=46;pct=0.53%;dist=Artery_-_Tibial=9,Heart_-_Atrial_Appendage=9,Pituitary=6,Cells_-_EBV-transformed_lymphocytes=5,Artery_-_Aorta=3,Lung=2,Artery_-_Coronary=2,Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hypothalamus=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1,Testis=1},DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7,PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3	JHUEM3_ENDOMETRIUM	1	1	0.5093	TRUE	29	213	5	17	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-123O10.4--GRIP1	38	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4962	0.0392	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHUEM3_ENDOMETRIUM	1	1	0.5354	FALSE	416	2512	207	587	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	GRB10--LANCL2	33	21	GRB10	10466	chr7:50823584:-	LANCL2	44741	chr7:55459486:+	ONLY_REF_SPLICE	YES	11	22	0.83	0.71	0.4309	0.2742	GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10,LANCL2->LanC_like_2,chr7:55433141-55501435:+	JHUEM3_ENDOMETRIUM	0.71	0.83	0.7051	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	SLC20A2--NECAB1	15	55	SLC20A2	2012	chr8:42396058:-	NECAB1	33977	chr8:91929720:+	ONLY_REF_SPLICE	YES	65	1	0.52	0.99	0.1959	0.7182	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,NECAB1->N-terminal_EF-hand_calcium_binding_protein_1,chr8:91803778-91971636:+	JHUEM3_ENDOMETRIUM	0.52	0.99	0.9141	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	GRB10--LANCL2	20	23	GRB10	12649	chr7:50799969:-	LANCL2	44741	chr7:55459486:+	ONLY_REF_SPLICE	YES	20	22	0.68	0.66	0.2612	0.3003	GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10,LANCL2->LanC_like_2,chr7:55433141-55501435:+	JHUEM3_ENDOMETRIUM	0.66	0.68	0.5615	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-ND6--MT-TE	25	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3265	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM3_ENDOMETRIUM	1	1	0.3265	FALSE	499	1288	110	792	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	ZNF654--HMGB2	21	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2742	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	JHUEM3_ENDOMETRIUM	1	1	0.2742	TRUE	0	0	0	518	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	NRIP1--AF127936.7	19	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.2481	0.0261	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHUEM3_ENDOMETRIUM	0.91	1	0.2742	FALSE	292	1546	117	613	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	GRB10--LANCL2	10	32	GRB10	16627	chr7:50793710:-	LANCL2	44741	chr7:55459486:+	ONLY_REF_SPLICE	YES	18	22	0.7	0.66	0.1306	0.4179	GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10,LANCL2->LanC_like_2,chr7:55433141-55501435:+	JHUEM3_ENDOMETRIUM	0.66	0.7	0.5485	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-ND6--MT-TE	16	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.2089	0.0392	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM3_ENDOMETRIUM	0.95	1	0.2481	FALSE	499	1288	110	792	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-TA--MT-TC	14	11	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.1828	0.1436	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM3_ENDOMETRIUM	1	1	0.3264	FALSE	462	80	0	856	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	FAM49B--SULF1	14	7	FAM49B	1760	chr8:131028616:-	SULF1	35260	chr8:70408000:+	ONLY_REF_SPLICE	YES	0	12	1	0.64	0.1828	0.0914	FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,SULF1->chr8:70378859-70573150:+,sulfatase_1	JHUEM3_ENDOMETRIUM	0.64	1	0.2742	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	LAMA2--TUSC3	13	8	LAMA2	33536	chr6:129663612:+	TUSC3	83236	chr8:15517016:+	ONLY_REF_SPLICE	YES	1	110	0.95	0.16	0.1698	0.1045	LAMA2->chr6:129204342-129837714:+,laminin_subunit_alpha_2,TUSC3->chr8:15274724-15624158:+,tumor_suppressor_candidate_3	JHUEM3_ENDOMETRIUM	0.16	0.95	0.2743	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	HDGFRP2--DDX19B	8	27	HDGFRP2	1136	chr19:4472419:+	DDX19B	22599	chr16:70348805:+	ONLY_REF_SPLICE	YES	28	63	0.56	0.36	0.1045	0.3526	HDGFRP2->chr19:4472284-4502223:+,DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+	JHUEM3_ENDOMETRIUM	0.36	0.56	0.4571	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	SLC20A2--NECAB1	2	51	SLC20A2	1475	chr8:42396595:-	NECAB1	33977	chr8:91929720:+	ONLY_REF_SPLICE	YES	56	1	0.49	0.98	0.0261	0.666	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,NECAB1->N-terminal_EF-hand_calcium_binding_protein_1,chr8:91803778-91971636:+	JHUEM3_ENDOMETRIUM	0.49	0.98	0.6921	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-ND6--MT-TE	14	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1828	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM3_ENDOMETRIUM	1	1	0.1828	FALSE	499	1288	110	792	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	PAK1--AAMDC	13	1	PAK1	2084	chr11:77184597:-	AAMDC	43610	chr11:77629107:+	ONLY_REF_SPLICE	YES	58	7	0.19	0.67	0.1698	0.0131	PAK1->Oncogene{Bushman},chr11:77032752-77185680:-,p21_(RAC1)_activated_kinase_1,AAMDC->adipogenesis_associated,_Mth938_domain_containing,chr11:77532155-77629478:+	JHUEM3_ENDOMETRIUM	0.19	0.67	0.1829	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	INTS4--DKFZP434E1119	12	1	INTS4	20592	chr11:77629107:-	DKFZP434E1119	33470	chr11:77184597:+	INCL_NON_REF_SPLICE	YES	272	1	0.05	0.93	0.1567	0.0131	INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,DKFZP434E1119->chr11:77184416-77188074:+	JHUEM3_ENDOMETRIUM	0.05	0.93	0.1698	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	PCAT1--RP11-382A18.2	11	2	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10907	chr8:128351526:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1436	0.0261	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	JHUEM3_ENDOMETRIUM	0.93	1	0.1697	TRUE	4	84	1	46	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	FAM110B--FAM49B	9	4	FAM110B	5782	chr8:58988182:+	FAM49B	40472	chr8:130859120:-	ONLY_REF_SPLICE	YES	7	167	0.65	0.07	0.1175	0.0522	FAM110B->chr8:58907068-59116838:+,family_with_sequence_similarity_110_member_B,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	JHUEM3_ENDOMETRIUM	0.07	0.65	0.1697	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	RP4-565E6.1--HYDIN	9	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	2	1	0.87	0.1175	0.0522	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	JHUEM3_ENDOMETRIUM	0.87	1	0.1697	TRUE	456	1387	91	133	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	SLC20A2--NECAB1	10	0	SLC20A2	1067	chr8:42397003:-	NECAB1	33977	chr8:91929720:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1306	0	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,NECAB1->N-terminal_EF-hand_calcium_binding_protein_1,chr8:91803778-91971636:+	JHUEM3_ENDOMETRIUM	1	1	0.1306	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-ND6--MT-TE	8	6	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1045	0.0784	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM3_ENDOMETRIUM	1	1	0.1829	FALSE	499	1288	110	792	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	TUSC3--LAMA2	8	5	TUSC3	5774	chr8:15480758:+	LAMA2	40687	chr6:129581856:+	ONLY_REF_SPLICE	YES	89	0	0.13	1	0.1045	0.0653	TUSC3->chr8:15274724-15624158:+,tumor_suppressor_candidate_3,LAMA2->chr6:129204342-129837714:+,laminin_subunit_alpha_2	JHUEM3_ENDOMETRIUM	0.13	1	0.1698	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	MED30--NCALD	4	20	MED30	1341	chr8:118533292:+	NCALD	24532	chr8:102792207:-	ONLY_REF_SPLICE	YES	58	8	0.29	0.75	0.0522	0.2612	MED30->chr8:118532952-118552501:+,mediator_complex_subunit_30,NCALD->chr8:102698771-103137135:-,neurocalcin_delta	JHUEM3_ENDOMETRIUM	0.29	0.75	0.3134	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-353N4.6--SEC22B	8	4	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	57	217	0.17	0.05	0.1045	0.0522	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	JHUEM3_ENDOMETRIUM	0.05	0.17	0.1567	TRUE	49	42	7	43	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	8	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.1045	0.0261	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHUEM3_ENDOMETRIUM	0.91	1	0.1306	FALSE	515	4851	409	746	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	CASC9--RP11-300E4.2	8	1	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	13	0	0.41	1	0.1045	0.0131	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	JHUEM3_ENDOMETRIUM	0.41	1	0.1176	TRUE	0	12	0	10	12	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CHD7--MED30	8	1	CHD7	6284	chr8:61693989:+	MED30	47694	chr8:118552122:+	ONLY_REF_SPLICE	YES	4	86	0.69	0.09	0.1045	0.0131	CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7,MED30->chr8:118532952-118552501:+,mediator_complex_subunit_30	JHUEM3_ENDOMETRIUM	0.09	0.69	0.1176	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	DSCR4--KCNJ6	7	5	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	2	4	0.86	0.75	0.0914	0.0653	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	JHUEM3_ENDOMETRIUM	0.75	0.86	0.1567	FALSE	0	24	0	27	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	GRB10--LANCL2	1	29	GRB10	15728	chr7:50794609:-	LANCL2	44741	chr7:55459486:+	ONLY_REF_SPLICE	YES	18	22	0.62	0.58	0.0131	0.3787	GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10,LANCL2->LanC_like_2,chr7:55433141-55501435:+	JHUEM3_ENDOMETRIUM	0.58	0.62	0.3918	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-TA--MT-TC	5	11	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0653	0.1436	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM3_ENDOMETRIUM	1	1	0.2089	FALSE	462	80	0	856	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	GRB10--LANCL2	1	25	GRB10	14847	chr7:50795490:-	LANCL2	44741	chr7:55459486:+	ONLY_REF_SPLICE	NO	20	22	0.57	0.54	0.0131	0.3265	GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10,LANCL2->LanC_like_2,chr7:55433141-55501435:+	JHUEM3_ENDOMETRIUM	0.54	0.57	0.3396	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CASC9--RP11-300E4.2	6	4	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	14	0	0.42	1	0.0784	0.0522	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	JHUEM3_ENDOMETRIUM	0.42	1	0.1306	TRUE	0	23	0	19	23	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	FAM49B--SULF1	7	0	FAM49B	1523	chr8:131028853:-	SULF1	36422	chr8:70414109:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0914	0	FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,SULF1->chr8:70378859-70573150:+,sulfatase_1	JHUEM3_ENDOMETRIUM	1	1	0.0914	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-CO1--MT-ND1	6	4	MT-CO1	1653	chrM:6556:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	16750	7091	0	0	0.0784	0.0522	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHUEM3_ENDOMETRIUM	0	0	0.1306	FALSE	39	30	6	19	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0914	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	JHUEM3_ENDOMETRIUM	1	1	0.0914	FALSE	462	80	0	856	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-680G10.1--GSE1	7	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0914	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHUEM3_ENDOMETRIUM	1	1	0.0914	TRUE	465	1949	224	605	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	FAM49B--NKAIN3	3	14	FAM49B	14700	chr8:130883621:-	NKAIN3	31750	chr8:63492098:+	ONLY_REF_SPLICE	YES	154	0	0.1	1	0.0392	0.1828	FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,NKAIN3->Na+/K+_transporting_ATPase_interacting_3,chr8:63161150-63912211:+	JHUEM3_ENDOMETRIUM	0.1	1	0.222	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-ND6--MT-TE	5	6	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0653	0.0784	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM3_ENDOMETRIUM	1	1	0.1437	FALSE	499	1288	110	792	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-114H23.1--RP11-114H23.2	6	2	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0784	0.0261	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	JHUEM3_ENDOMETRIUM	0.89	1	0.1045	FALSE	81	155	12	160	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	C15orf57--CBX3	5	5	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	17	13	0.37	0.43	0.0653	0.0653	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JHUEM3_ENDOMETRIUM	0.37	0.43	0.1306	TRUE	267	562	48	632	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	CTD-2337A12.1--CAST	6	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	133	1	0.05	0.0784	0.0131	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	JHUEM3_ENDOMETRIUM	0.05	1	0.0915	TRUE	347	1186	183	220	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-ND3--MT-ATP8	6	1	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	137	2	0.05	0.78	0.0784	0.0131	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	JHUEM3_ENDOMETRIUM	0.05	0.78	0.0915	FALSE	351	233	23	137	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-CO1--MT-ND1	5	4	MT-CO1	1653	chrM:6556:+	MT-ND1	5761	chrM:3525:+	INCL_NON_REF_SPLICE	YES	16750	7410	0	0	0.0653	0.0522	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHUEM3_ENDOMETRIUM	0	0	0.1175	FALSE	39	30	6	19	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	MED30--NCALD	1	19	MED30	1341	chr8:118533292:+	NCALD	27271	chr8:102758221:-	ONLY_REF_SPLICE	YES	58	7	0.26	0.74	0.0131	0.2481	MED30->chr8:118532952-118552501:+,mediator_complex_subunit_30,NCALD->chr8:102698771-103137135:-,neurocalcin_delta	JHUEM3_ENDOMETRIUM	0.26	0.74	0.2612	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	PRKDC--RP11-388G22.1	5	3	PRKDC	75800	chr8:48701467:-	RP11-388G22.1	91018	chr8:58507021:-	ONLY_REF_SPLICE	YES	163	0	0.05	1	0.0653	0.0392	PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide,RP11-388G22.1->chr8:58506725-58717588:-	JHUEM3_ENDOMETRIUM	0.05	1	0.1045	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-353N4.6--SEC22B	4	6	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	59	230	0.14	0.04	0.0522	0.0784	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	JHUEM3_ENDOMETRIUM	0.04	0.14	0.1306	TRUE	33	36	9	21	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-CO1--MT-ND1	4	4	MT-CO1	1699	chrM:6602:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	NO	16035	7091	0	0	0.0522	0.0522	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHUEM3_ENDOMETRIUM	0	0	0.1044	FALSE	39	30	6	19	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-680G10.1--GSE1	5	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0653	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	JHUEM3_ENDOMETRIUM	1	1	0.0653	TRUE	458	1351	185	561	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-ND6--MT-TE	4	3	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0522	0.0392	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM3_ENDOMETRIUM	0.88	1	0.0914	FALSE	499	1288	110	792	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-ND6--MT-TE	4	3	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.88	1	0.0522	0.0392	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM3_ENDOMETRIUM	0.88	1	0.0914	FALSE	499	1288	110	792	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	ZNF250--PVT1	4	3	ZNF250	13108	chr8:146101922:-	PVT1	34328	chr8:129001408:+	ONLY_REF_SPLICE	YES	2	22	0.78	0.24	0.0522	0.0392	ZNF250->chr8:146076632-146127553:-,zinc_finger_protein_250,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	JHUEM3_ENDOMETRIUM	0.24	0.78	0.0914	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	C15orf57--CBX3	3	6	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	19	10	0.32	0.47	0.0392	0.0784	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	JHUEM3_ENDOMETRIUM	0.32	0.47	0.1176	TRUE	267	562	48	632	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	CA8--FAM110B	4	2	CA8	2557	chr8:61192248:-	FAM110B	29740	chr8:59110390:+	ONLY_REF_SPLICE	YES	10	0	0.38	1	0.0522	0.0261	CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-,FAM110B->chr8:58907068-59116838:+,family_with_sequence_similarity_110_member_B	JHUEM3_ENDOMETRIUM	0.38	1	0.0783	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-CO1--MT-ND1	3	6	MT-CO1	1971	chrM:6874:+	MT-ND1	5731	chrM:3495:+	INCL_NON_REF_SPLICE	YES	16622	6670	0	0	0.0392	0.0784	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHUEM3_ENDOMETRIUM	0	0	0.1176	FALSE	39	30	6	19	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-CO1--MT-ND1	4	1	MT-CO1	1324	chrM:6227:+	MT-ND1	5558	chrM:3322:+	INCL_NON_REF_SPLICE	YES	14624	0	0	1	0.0522	0.0131	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHUEM3_ENDOMETRIUM	0	1	0.0653	FALSE	39	29	6	19	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	JHUEM3_ENDOMETRIUM	1	1	0.0522	FALSE	183	104	9	328	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0522	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM3_ENDOMETRIUM	1	1	0.0522	FALSE	499	1288	110	792	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	TRAM1--RP11-573J24.1	4	0	TRAM1	10505	chr8:71495399:-	RP11-573J24.1	18214	chr8:64501381:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0522	0	TRAM1->chr8:71485677-71520622:-,translocation_associated_membrane_protein_1,RP11-573J24.1->chr8:64498558-64501966:+	JHUEM3_ENDOMETRIUM	1	1	0.0522	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-ND6--MT-TE	3	3	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.75	1	0.0392	0.0392	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	JHUEM3_ENDOMETRIUM	0.75	1	0.0784	FALSE	499	1288	110	792	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-120D5.1--MID1	3	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	19	1	0.24	0.0392	0.0392	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHUEM3_ENDOMETRIUM	0.24	1	0.0784	FALSE	16	356	14	466	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	CA8--FAM110B	3	2	CA8	2557	chr8:61192248:-	FAM110B	28641	chr8:59101877:+	ONLY_REF_SPLICE	YES	10	0	0.33	1	0.0392	0.0261	CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-,FAM110B->chr8:58907068-59116838:+,family_with_sequence_similarity_110_member_B	JHUEM3_ENDOMETRIUM	0.33	1	0.0653	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	FAM49B--NKAIN3	2	6	FAM49B	8896	chr8:130915558:-	NKAIN3	31750	chr8:63492098:+	ONLY_REF_SPLICE	YES	156	0	0.05	1	0.0261	0.0784	FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B,NKAIN3->Na+/K+_transporting_ATPase_interacting_3,chr8:63161150-63912211:+	JHUEM3_ENDOMETRIUM	0.05	1	0.1045	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-CO1--MT-ND1	3	2	MT-CO1	1585	chrM:6488:+	MT-ND1	5567	chrM:3331:+	INCL_NON_REF_SPLICE	YES	13877	0	0	1	0.0392	0.0261	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHUEM3_ENDOMETRIUM	0	1	0.0653	FALSE	39	30	6	19	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	MT-CO1--MT-ND1	3	2	MT-CO1	1653	chrM:6556:+	MT-ND1	6262	chrM:4026:+	INCL_NON_REF_SPLICE	YES	16750	5009	0	0	0.0392	0.0261	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	JHUEM3_ENDOMETRIUM	0	0	0.0653	FALSE	39	30	6	19	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	AMN1--ITPR2	3	1	AMN1	9564	chr12:31841941:-	ITPR2	17402	chr12:26943160:-	ONLY_REF_SPLICE	YES	7	9	0.36	0.31	0.0392	0.0131	AMN1->antagonist_of_mitotic_exit_network_1_homolog,chr12:31824071-31882108:-,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	JHUEM3_ENDOMETRIUM	0.31	0.36	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CA8--FAM110B	3	1	CA8	2557	chr8:61192248:-	FAM110B	31067	chr8:59116074:+	ONLY_REF_SPLICE	YES	10	0	0.29	1	0.0392	0.0131	CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-,FAM110B->chr8:58907068-59116838:+,family_with_sequence_similarity_110_member_B	JHUEM3_ENDOMETRIUM	0.29	1	0.0523	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-123O10.4--GRIP1	3	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0.0131	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHUEM3_ENDOMETRIUM	1	1	0.0523	FALSE	93	270	15	244	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	CHD7--MED30	3	0	CHD7	4853	chr8:61655656:+	MED30	44975	chr8:118540890:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7,MED30->chr8:118532952-118552501:+,mediator_complex_subunit_30	JHUEM3_ENDOMETRIUM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	GRB10--LANCL2	3	0	GRB10	1239	chr7:50860921:-	LANCL2	44741	chr7:55459486:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0392	0	GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10,LANCL2->LanC_like_2,chr7:55433141-55501435:+	JHUEM3_ENDOMETRIUM	1	1	0.0392	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.29	1	0.0261	0.0522	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHUEM3_ENDOMETRIUM	0.29	1	0.0783	FALSE	164	806	69	479	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	ZNF250--PVT1	2	4	ZNF250	13108	chr8:146101922:-	PVT1	33027	chr8:128996150:+	ONLY_REF_SPLICE	YES	2	20	0.75	0.23	0.0261	0.0522	ZNF250->chr8:146076632-146127553:-,zinc_finger_protein_250,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	JHUEM3_ENDOMETRIUM	0.23	0.75	0.0783	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	CA8--FAM110B	2	3	CA8	1365	chr8:61193607:-	FAM110B	24759	chr8:59058466:+	ONLY_REF_SPLICE	YES	21	5	0.19	0.5	0.0261	0.0392	CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-,FAM110B->chr8:58907068-59116838:+,family_with_sequence_similarity_110_member_B	JHUEM3_ENDOMETRIUM	0.19	0.5	0.0653	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-120D5.1--MID1	2	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	0	7	1	0.42	0.0261	0.0392	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHUEM3_ENDOMETRIUM	0.42	1	0.0653	FALSE	0	23	1	67	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-123O10.4--GRIP1	2	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0.0392	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	JHUEM3_ENDOMETRIUM	1	1	0.0653	FALSE	9	21	5	22	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-59N23.3--CMAS	2	3	RP11-59N23.3	1459	chr12:21815705:+	CMAS	6999	chr12:22208083:+	ONLY_REF_SPLICE	YES	0	69	1	0.07	0.0261	0.0392	RP11-59N23.3->chr12:21815247-21912966:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	JHUEM3_ENDOMETRIUM	0.07	1	0.0653	TRUE	0	14	5	5	10	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	DSCR4--KCNJ6	2	2	DSCR4	1233	chr21:39493222:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	6	4	0.4	0.5	0.0261	0.0261	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	JHUEM3_ENDOMETRIUM	0.4	0.5	0.0522	FALSE	0	24	0	27	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	2	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0.0261	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHUEM3_ENDOMETRIUM	1	1	0.0522	FALSE	467	2173	244	435	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	EVA1A--TACR1	2	1	EVA1A	7973	chr2:75745182:-	TACR1	16733	chr2:75347894:-	ONLY_REF_SPLICE	YES	182	0	0.02	1	0.0261	0.0131	EVA1A->chr2:75696428-75796848:-,eva-1_homolog_A,_regulator_of_programmed_cell_death,TACR1->chr2:75273590-75426826:-,tachykinin_receptor_1	JHUEM3_ENDOMETRIUM	0.02	1	0.0392	TRUE	0	0	0	2	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-353N4.6--SEC22B	1	5	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	59	217	0.09	0.03	0.0131	0.0653	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	JHUEM3_ENDOMETRIUM	0.03	0.09	0.0784	TRUE	49	42	7	43	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	GNAI2--NT5DC2	2	0	GNAI2	7094	chr3:50273885:+	NT5DC2	24024	chr3:52563350:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	GNAI2->G_protein_subunit_alpha_i2,Oncogene{Bushman},chr3:50263724-50296787:+,NT5DC2->5'-nucleotidase_domain_containing_2,chr3:52558386-52569070:-	JHUEM3_ENDOMETRIUM	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	GTF2A2--ANXA2	2	0	GTF2A2	1136	chr15:59949605:-	ANXA2	28017	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	GTF2A2->chr15:59930261-59949740:-,general_transcription_factor_IIA_subunit_2,ANXA2->annexin_A2,chr15:60639333-60695082:-	JHUEM3_ENDOMETRIUM	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	NRIP1--AF127936.7	1	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.33	1	0.0131	0.0522	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	JHUEM3_ENDOMETRIUM	0.33	1	0.0653	FALSE	125	705	46	456	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	RNF144B--DCDC2	2	0	RNF144B	2552	chr6:18387861:+	DCDC2	24966	chr6:24278439:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	RNF144B->chr6:18368779-18469105:+,ring_finger_protein_144B,DCDC2->chr6:24171984-24358280:-,doublecortin_domain_containing_2	JHUEM3_ENDOMETRIUM	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-353N4.6--SEC22B	1	4	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	NO	57	230	0.08	0.02	0.0131	0.0522	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	JHUEM3_ENDOMETRIUM	0.02	0.08	0.0653	TRUE	33	36	9	21	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	RPS4X--COL6A3	2	0	RPS4X	5069	chrX:71493082:-	COL6A3	39920	chr2:238262046:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0261	0	RPS4X->chrX:71475529-71497150:-,ribosomal_protein_S4,_X-linked,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	JHUEM3_ENDOMETRIUM	1	1	0.0261	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	TUSC3--LAMA2	1	4	TUSC3	5774	chr8:15480758:+	LAMA2	41799	chr6:129588251:+	ONLY_REF_SPLICE	YES	89	1	0.05	0.83	0.0131	0.0522	TUSC3->chr8:15274724-15624158:+,tumor_suppressor_candidate_3,LAMA2->chr6:129204342-129837714:+,laminin_subunit_alpha_2	JHUEM3_ENDOMETRIUM	0.05	0.83	0.0653	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	FAM110B--FAM49B	1	2	FAM110B	5782	chr8:58988182:+	FAM49B	41543	chr8:130854451:-	ONLY_REF_SPLICE	NO	7	129	0.3	0.02	0.0131	0.0261	FAM110B->chr8:58907068-59116838:+,family_with_sequence_similarity_110_member_B,FAM49B->chr8:130851839-131029375:-,family_with_sequence_similarity_49_member_B	JHUEM3_ENDOMETRIUM	0.02	0.3	0.0392	TRUE	0	0	0	1	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.75	1	0.0131	0.0261	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHUEM3_ENDOMETRIUM	0.75	1	0.0392	FALSE	407	2205	196	549	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0131	0.0261	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	JHUEM3_ENDOMETRIUM	1	1	0.0392	FALSE	192	492	57	212	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	GRB10--LANCL2	1	1	GRB10	6797	chr7:50846832:-	LANCL2	44741	chr7:55459486:+	ONLY_REF_SPLICE	NO	2	22	0.5	0.08	0.0131	0.0131	GRB10->Oncogene{Bushman},chr7:50657760-50861159:-,growth_factor_receptor_bound_protein_10,LANCL2->LanC_like_2,chr7:55433141-55501435:+	JHUEM3_ENDOMETRIUM	0.08	0.5	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000173
JHUEM3_ENDOMETRIUM	PAK1--AAMDC	1	1	PAK1	2084	chr11:77184597:-	AAMDC	42395	chr11:77611617:+	ONLY_REF_SPLICE	NO	58	18	0.03	0.1	0.0131	0.0131	PAK1->Oncogene{Bushman},chr11:77032752-77185680:-,p21_(RAC1)_activated_kinase_1,AAMDC->adipogenesis_associated,_Mth938_domain_containing,chr11:77532155-77629478:+	JHUEM3_ENDOMETRIUM	0.03	0.1	0.0262	TRUE	0	0	0	1	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	PCMTD1--C9orf3	1	1	PCMTD1	7395	chr8:52758221:-	C9orf3	57100	chr9:97848964:+	ONLY_REF_SPLICE	YES	76	92	0.03	0.02	0.0131	0.0131	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Ovary=[count:1=pct:1.9]},GTEx_v2:{count=12;pct=0.14%;dist=Artery_-_Tibial=2,Ovary=2,Artery_-_Coronary=2,Nerve_-_Tibial=2,Stomach=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Colon_-_Sigmoid=1},PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	JHUEM3_ENDOMETRIUM	0.02	0.03	0.0262	TRUE	2	3	0	1	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	RP11-120D5.1--MID1	1	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	0	19	1	0.1	0.0131	0.0131	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	JHUEM3_ENDOMETRIUM	0.1	1	0.0262	FALSE	0	48	1	163	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	RP4-565E6.1--HYDIN	1	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	8	1	0.2	0.0131	0.0131	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	JHUEM3_ENDOMETRIUM	0.2	1	0.0262	TRUE	84	87	4	41	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	2	472	0.5	0	0.0131	0.0131	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	JHUEM3_ENDOMETRIUM	0	0.5	0.0262	FALSE	0	59	0	125	0	FALSE	ACH-000173
JHUEM3_ENDOMETRIUM	ZFP41--BIRC6	1	1	ZFP41	1929	chr8:144329919:+	BIRC6	95347	chr2:32832522:+	ONLY_REF_SPLICE	YES	5	61	0.29	0.03	0.0131	0.0131	ZFP41->ZFP41_zinc_finger_protein,chr8:144328991-144344875:+,chr8:144329280-144358573:+,BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+	JHUEM3_ENDOMETRIUM	0.03	0.29	0.0262	TRUE	0	0	0	1	0	FALSE	ACH-000173
SNGM_ENDOMETRIUM	MT-TA--MT-TN	78	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.022	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNGM_ENDOMETRIUM	1	1	1.022	FALSE	369	2501	205	193	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	TIMM23B--LINC00843	62	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8124	0.3669	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNGM_ENDOMETRIUM	0.99	1	1.1793	TRUE	508	994	45	981	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-TA--MT-TC	51	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6682	0.0655	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNGM_ENDOMETRIUM	1	1	0.7337	FALSE	462	80	0	856	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	TIMM23--RP11-464F9.1	43	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	200	3	0.19	0.94	0.5634	0.0393	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNGM_ENDOMETRIUM	0.19	0.94	0.6027	TRUE	519	3926	326	965	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-TA--MT-TN	18	56	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2359	0.7338	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNGM_ENDOMETRIUM	1	1	0.9697	FALSE	369	2501	205	193	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-TA--MT-TN	10	73	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.131	0.9565	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNGM_ENDOMETRIUM	1	1	1.0875	FALSE	369	2501	205	193	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	25	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	0	0.9	1	0.3276	0.1572	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNGM_ENDOMETRIUM	0.9	1	0.4848	FALSE	515	4851	409	746	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-TA--MT-TN	19	26	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.249	0.3407	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNGM_ENDOMETRIUM	1	1	0.5897	FALSE	369	2501	205	193	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND6--MT-TE	23	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3014	0.0393	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNGM_ENDOMETRIUM	1	1	0.3407	FALSE	499	1288	110	792	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-TA--MT-TC	21	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2752	0.0524	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNGM_ENDOMETRIUM	1	1	0.3276	FALSE	462	80	0	856	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-TA--MT-TN	11	43	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1441	0.5634	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNGM_ENDOMETRIUM	1	1	0.7075	FALSE	369	2501	205	193	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND1--MT-RNR2	10	34	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	50	0	0.47	1	0.131	0.4455	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0.47	1	0.5765	FALSE	114	26	4	85	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-TA--MT-TN	17	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2227	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNGM_ENDOMETRIUM	1	1	0.2227	FALSE	369	2501	205	193	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	ZNF654--HMGB2	17	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2227	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNGM_ENDOMETRIUM	1	1	0.2227	TRUE	0	0	0	518	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND1--MT-RNR2	8	33	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	49	0	0.46	1	0.1048	0.4324	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0.46	1	0.5372	FALSE	114	26	4	85	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-TA--MT-TN	5	38	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0655	0.4979	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNGM_ENDOMETRIUM	1	1	0.5634	FALSE	369	2501	205	193	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND1--MT-RNR2	4	40	MT-ND1	1297	chrM:3603:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	68	0	0.39	1	0.0524	0.5241	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0.39	1	0.5765	FALSE	114	26	4	85	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	10	13	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.131	0.1703	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNGM_ENDOMETRIUM	1	1	0.3013	FALSE	467	2173	244	435	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ATP6--MT-RNR2	12	4	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	12243	21815	0	0	0.1572	0.0524	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	0	0.2096	FALSE	63	17	1	58	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-CO3--MT-ATP6	6	28	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	8	5	0.81	0.87	0.0786	0.3669	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNGM_ENDOMETRIUM	0.81	0.87	0.4455	FALSE	189	492	56	216	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	RP11-123O10.4--GRIP1	13	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1703	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNGM_ENDOMETRIUM	1	1	0.1703	FALSE	416	2512	207	587	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND6--MT-TE	12	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1572	0.0393	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNGM_ENDOMETRIUM	1	1	0.1965	FALSE	499	1288	110	792	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ATP6--MT-RNR2	11	5	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	12826	21572	0	0	0.1441	0.0655	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	0	0.2096	FALSE	63	17	1	58	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND1--MT-RNR2	3	36	MT-ND1	1273	chrM:3579:+	MT-RNR2	4969	chrM:1683:+	INCL_NON_REF_SPLICE	YES	50	0	0.44	1	0.0393	0.4717	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0.44	1	0.511	FALSE	114	26	4	85	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND6--MT-TE	10	8	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.131	0.1048	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNGM_ENDOMETRIUM	0.95	1	0.2358	FALSE	499	1288	110	792	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	NRIP1--AF127936.7	11	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.1441	0.0262	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNGM_ENDOMETRIUM	0.76	1	0.1703	FALSE	292	1546	117	613	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-CO3--MT-ATP6	3	28	MT-CO3	1220	chrM:9426:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	NO	11	5	0.74	0.86	0.0393	0.3669	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNGM_ENDOMETRIUM	0.74	0.86	0.4062	FALSE	189	492	56	216	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-CO3--MT-ATP6	3	27	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	1	4	0.97	0.88	0.0393	0.3538	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNGM_ENDOMETRIUM	0.88	0.97	0.3931	FALSE	189	492	56	216	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND1--MT-TL1	6	15	MT-ND1	1342	chrM:3648:+	MT-TL1	5013	chrM:3286:+	INCL_NON_REF_SPLICE	YES	10	0	0.68	1	0.0786	0.1965	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SNGM_ENDOMETRIUM	0.68	1	0.2751	FALSE	210	95	5	49	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-TA--MT-TN	3	25	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0.3276	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNGM_ENDOMETRIUM	1	1	0.3669	FALSE	369	2501	205	193	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-TA--MT-TN	9	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1179	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNGM_ENDOMETRIUM	1	1	0.1179	FALSE	369	2501	205	193	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ATP6--MT-RNR2	6	11	MT-ATP6	1555	chrM:9081:+	MT-RNR2	5408	chrM:2397:+	INCL_NON_REF_SPLICE	YES	4002	23725	0	0	0.0786	0.1441	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	0	0.2227	FALSE	63	17	1	58	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND4--MT-ATP8	8	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19646	76	0	0.11	0.1048	0.0131	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNGM_ENDOMETRIUM	0	0.11	0.1179	FALSE	231	205	14	283	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND4--MT-ATP8	8	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	16462	5	0	0.64	0.1048	0.0131	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNGM_ENDOMETRIUM	0	0.64	0.1179	FALSE	230	193	14	283	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1048	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNGM_ENDOMETRIUM	1	1	0.1048	FALSE	462	80	0	856	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-TA--MT-TC	7	4	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0917	0.0524	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNGM_ENDOMETRIUM	1	1	0.1441	FALSE	462	80	0	856	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-TA--MT-TN	8	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1048	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNGM_ENDOMETRIUM	1	1	0.1048	FALSE	369	2501	205	193	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-TA--MT-TN	8	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1048	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNGM_ENDOMETRIUM	1	1	0.1048	FALSE	369	2501	205	193	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	HSP90AB1--MT-RNR2	7	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2783	0	0	1	0.0917	0.0262	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	1	0.1179	FALSE	13	9	0	364	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	HSP90AB1--MT-RNR2	7	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2790	0	0	1	0.0917	0.0262	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	1	0.1179	FALSE	13	9	0	364	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND6--MT-TE	4	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0.1834	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNGM_ENDOMETRIUM	1	1	0.2358	FALSE	499	1288	110	792	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ATP6--MT-RNR2	7	1	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	10794	0	0	1	0.0917	0.0131	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	1	0.1048	FALSE	63	17	1	58	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ATP6--MT-RNR2	7	1	MT-ATP6	1132	chrM:8658:+	MT-RNR2	5436	chrM:2425:+	INCL_NON_REF_SPLICE	YES	11458	23558	0	0	0.0917	0.0131	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	0	0.1048	FALSE	63	17	1	58	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ATP6--MT-RNR2	7	1	MT-ATP6	1110	chrM:8636:+	MT-RNR2	5247	chrM:2236:+	INCL_NON_REF_SPLICE	YES	10748	22346	0	0	0.0917	0.0131	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	0	0.1048	FALSE	63	17	1	58	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND4--MT-ATP8	7	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	19646	8	0	0.5	0.0917	0.0131	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNGM_ENDOMETRIUM	0	0.5	0.1048	FALSE	231	205	14	283	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	RP11-155G15.2--RP11-1E3.1	7	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0917	0.0131	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	SNGM_ENDOMETRIUM	1	1	0.1048	FALSE	46	201	11	112	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	4	13	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.81	1	0.0524	0.1703	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNGM_ENDOMETRIUM	0.81	1	0.2227	FALSE	407	2205	196	549	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ATP6--MT-RNR2	6	3	MT-ATP6	1123	chrM:8649:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	11124	22694	0	0	0.0786	0.0393	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	0	0.1179	FALSE	63	17	1	58	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND6--MT-TE	3	15	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0393	0.1965	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNGM_ENDOMETRIUM	0.95	1	0.2358	FALSE	499	1288	110	792	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND6--MT-TE	3	15	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0393	0.1965	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNGM_ENDOMETRIUM	0.95	1	0.2358	FALSE	499	1288	110	792	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	DNAJC25--UGCG	6	2	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	55	99	0.13	0.07	0.0786	0.0262	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	SNGM_ENDOMETRIUM	0.07	0.13	0.1048	TRUE	50	73	10	50	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND1--MT-TL1	4	10	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	6	0	0.7	1	0.0524	0.131	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SNGM_ENDOMETRIUM	0.7	1	0.1834	FALSE	210	95	5	49	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	ACTR3C--RP11-728K20.1	6	1	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	7	0	0.5	1	0.0786	0.0131	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	SNGM_ENDOMETRIUM	0.5	1	0.0917	TRUE	0	5	0	16	1	FALSE	ACH-000974
SNGM_ENDOMETRIUM	CCDC122--ENOX1	6	1	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	43	7	0.14	0.5	0.0786	0.0131	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	SNGM_ENDOMETRIUM	0.14	0.5	0.0917	FALSE	39	52	2	34	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ATP6--MT-RNR2	6	1	MT-ATP6	1111	chrM:8637:+	MT-RNR2	5402	chrM:2391:+	INCL_NON_REF_SPLICE	YES	10757	23601	0	0	0.0786	0.0131	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	0	0.0917	FALSE	63	17	1	58	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND1--MT-RNR2	5	5	MT-ND1	1207	chrM:3513:+	MT-RNR2	5683	chrM:2397:+	INCL_NON_REF_SPLICE	NO	34	23728	0.23	0	0.0655	0.0655	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	0.23	0.131	FALSE	120	26	5	87	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ATP6--MT-RNR2	3	12	MT-ATP6	1516	chrM:9042:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	YES	6955	21274	0	0	0.0393	0.1572	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	0	0.1965	FALSE	63	17	1	58	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND1--MT-RNR2	3	12	MT-ND1	1343	chrM:3649:+	MT-RNR2	5020	chrM:1734:+	INCL_NON_REF_SPLICE	YES	85	0	0.15	1	0.0393	0.1572	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0.15	1	0.1965	FALSE	114	26	4	85	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND4--MT-ATP8	4	8	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17751	76	0	0.14	0.0524	0.1048	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNGM_ENDOMETRIUM	0	0.14	0.1572	FALSE	231	215	16	283	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND1--MT-RNR2	3	11	MT-ND1	1282	chrM:3588:+	MT-RNR2	4985	chrM:1699:+	INCL_NON_REF_SPLICE	YES	59	0	0.19	1	0.0393	0.1441	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0.19	1	0.1834	FALSE	114	26	4	85	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND1--MT-TL1	4	6	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0.0786	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	SNGM_ENDOMETRIUM	1	1	0.131	FALSE	210	95	5	49	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND4--MT-ATP8	5	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	16623	101	0	0.06	0.0655	0.0131	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNGM_ENDOMETRIUM	0	0.06	0.0786	FALSE	231	204	14	283	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	RP11-120D5.1--MID1	5	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	33	1	0.15	0.0655	0.0131	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNGM_ENDOMETRIUM	0.15	1	0.0786	FALSE	16	356	14	466	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	CTD-2337A12.1--CAST	5	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0655	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNGM_ENDOMETRIUM	1	1	0.0655	TRUE	347	1186	183	220	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ATP6--MT-RNR2	3	7	MT-ATP6	1171	chrM:8697:+	MT-RNR2	4819	chrM:1808:+	INCL_NON_REF_SPLICE	YES	14044	6957	0	0	0.0393	0.0917	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	0	0.131	FALSE	63	17	1	58	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-TA--MT-TC	3	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0.0786	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNGM_ENDOMETRIUM	1	1	0.1179	FALSE	462	80	0	856	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	NRIP1--AF127936.7	4	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.29	1	0.0524	0.0262	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNGM_ENDOMETRIUM	0.29	1	0.0786	FALSE	125	705	46	456	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	RP11-96H19.1--RP11-446N19.1	1	14	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0.1834	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNGM_ENDOMETRIUM	1	1	0.1965	FALSE	192	492	57	212	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND1--MT-RNR2	3	5	MT-ND1	1235	chrM:3541:+	MT-RNR2	5565	chrM:2279:+	INCL_NON_REF_SPLICE	YES	40	22266	0.17	0	0.0393	0.0655	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	0.17	0.1048	FALSE	120	26	5	87	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND1--MT-RNR2	3	5	MT-ND1	1227	chrM:3533:+	MT-RNR2	5558	chrM:2272:+	INCL_NON_REF_SPLICE	YES	36	21819	0.18	0	0.0393	0.0655	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	0.18	0.1048	FALSE	120	26	5	87	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND4--MT-ATP8	3	5	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	20394	1	0	0.89	0.0393	0.0655	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNGM_ENDOMETRIUM	0	0.89	0.1048	FALSE	231	217	16	283	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	PCAT1--RP11-382A18.2	4	1	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0.0131	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	SNGM_ENDOMETRIUM	1	1	0.0655	TRUE	4	84	1	46	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	HSPBP1--GRK5	4	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNGM_ENDOMETRIUM	1	1	0.0524	TRUE	1	39	0	134	39	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNGM_ENDOMETRIUM	1	1	0.0524	FALSE	189	492	56	216	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-CO3--MT-ATP6	4	0	MT-CO3	1032	chrM:9238:+	MT-ATP6	5421	chrM:9163:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNGM_ENDOMETRIUM	1	1	0.0524	FALSE	189	492	56	216	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND3--MT-ATP8	4	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNGM_ENDOMETRIUM	1	1	0.0524	FALSE	351	233	23	137	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND4--MT-ATP8	3	4	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	20347	1	0	0.88	0.0393	0.0524	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNGM_ENDOMETRIUM	0	0.88	0.0917	FALSE	231	217	16	283	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND4--MT-ATP8	4	0	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNGM_ENDOMETRIUM	1	1	0.0524	FALSE	230	193	14	283	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNGM_ENDOMETRIUM	1	1	0.0524	FALSE	499	1288	110	792	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	11458	0	0	1	0.0393	0.0393	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	1	0.0786	FALSE	63	17	1	58	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1125	chrM:8651:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	11186	21753	0	0	0.0393	0.0393	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	0	0.0786	FALSE	63	17	1	58	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5222	chrM:2211:+	INCL_NON_REF_SPLICE	YES	11227	21893	0	0	0.0393	0.0393	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	0	0.0786	FALSE	63	17	1	58	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1121	chrM:8647:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	YES	11126	21484	0	0	0.0393	0.0262	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	0	0.0655	FALSE	63	17	1	58	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-CO3--MT-ATP6	3	2	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	12	0	0.29	1	0.0393	0.0262	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNGM_ENDOMETRIUM	0.29	1	0.0655	FALSE	189	492	56	216	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	NRIP1--AF127936.7	3	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	19	0	0.21	1	0.0393	0.0262	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNGM_ENDOMETRIUM	0.21	1	0.0655	FALSE	164	806	69	479	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	ACTR3C--RP11-728K20.1	3	1	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	19906	chr7:149588390:-	ONLY_REF_SPLICE	YES	7	1	0.36	0.8	0.0393	0.0131	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	SNGM_ENDOMETRIUM	0.36	0.8	0.0524	TRUE	3	46	4	12	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	DNAJC24--IMMP1L	3	1	DNAJC24	2020	chr11:31392406:+	IMMP1L	34941	chr11:31455117:-	ONLY_REF_SPLICE	YES	106	52	0.04	0.07	0.0393	0.0131	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Nerve_-_Tibial=2,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Pancreas=1},LOCAL_INVERSION:+:-:[552],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	SNGM_ENDOMETRIUM	0.04	0.07	0.0524	TRUE	0	4	0	9	1	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1122	chrM:8648:+	MT-RNR2	5410	chrM:2399:+	INCL_NON_REF_SPLICE	YES	11141	23704	0	0	0.0393	0.0131	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	0	0	0.0524	FALSE	63	17	1	58	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND4--MT-ATP8	3	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	17205	1	0	0.8	0.0393	0.0131	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNGM_ENDOMETRIUM	0	0.8	0.0524	FALSE	231	204	14	283	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	RP11-353N4.6--SEC22B	3	1	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	154	219	0.03	0.02	0.0393	0.0131	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SNGM_ENDOMETRIUM	0.02	0.03	0.0524	TRUE	49	42	7	43	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	FBXL5--RP11-665G4.1	3	0	FBXL5	16339	chr4:15613889:-	RP11-665G4.1	25121	chr4:15068021:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0393	0	GTEx_FI:{Blood_Vessel=[count:24=pct:6.5],Brain=[count:7=pct:1.1],Nerve=[count:2=pct:1.2],Heart=[count:1=pct:0.4],Testis=[count:1=pct:1.0]},FBXL5->F-box_and_leucine-rich_repeat_protein_5,chr4:15606162-15683302:-,RP11-665G4.1->chr4:15006566-15429538:-	SNGM_ENDOMETRIUM	1	1	0.0393	TRUE	15	15	1	1	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	GATS--PILRB	3	0	GATS	6032	chr7:99820220:-	PILRB	24823	chr7:99952766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0393	0	GTEx&tcga_normals:31/3694=0.84%,GTEx:0.30%,GTEx_FI:{Muscle=[count:30=pct:12.8],Brain=[count:21=pct:3.2],Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Adrenal_Gland=[count:2=pct:2.4],Lung=[count:2=pct:1.2],Vagina=[count:1=pct:1.8],Kidney=[count:1=pct:7.1],Pancreas=[count:1=pct:0.6],Blood=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3],Whole_Blood=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Muscle_-_Skeletal=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1},LOCAL_INVERSION:-,chr7:+:[63900],GATS->GATS,_stromal_antigen_3_opposite_strand,chr7:99798276-99869837:-,chr7:99798283-99869855:-,PILRB->chr7:99933737-99965356:+,paired_immunoglobin-like_type_2_receptor_beta	SNGM_ENDOMETRIUM	1	1	0.0393	TRUE	57	41	2	35	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNGM_ENDOMETRIUM	1	1	0.0393	FALSE	63	17	1	58	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNGM_ENDOMETRIUM	1	1	0.0393	FALSE	189	492	56	216	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNGM_ENDOMETRIUM	1	1	0.0393	FALSE	499	1288	110	792	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	MT-TA--MT-TN	3	0	MT-TA	1067	chrM:5589:-	MT-TN	4133	chrM:5666:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNGM_ENDOMETRIUM	1	1	0.0393	FALSE	369	2501	205	193	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	STX18-AS1--MSX1	2	3	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	3	14	0.62	0.26	0.0262	0.0393	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	SNGM_ENDOMETRIUM	0.26	0.62	0.0655	TRUE	37	101	7	40	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	CCDC142--TMEM205	2	0	CCDC142	3640	chr2:74707896:-	TMEM205	12272	chr19:11456304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	CCDC142->chr2:74699113-74710535:-,coiled-coil_domain_containing_142,TMEM205->chr19:11453452-11457194:-,transmembrane_protein_205	SNGM_ENDOMETRIUM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000974
SNGM_ENDOMETRIUM	FBXL8--SLC3A2	2	0	FBXL8	2944	chr16:67195840:+	SLC3A2	15421	chr11:62650380:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	FBXL8->F-box_and_leucine-rich_repeat_protein_8,chr16:67193834-67198473:+,SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2	SNGM_ENDOMETRIUM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000974
SNGM_ENDOMETRIUM	RP11-89K10.1--PCAT1	2	0	RP11-89K10.1	2156	chr8:127601535:+	PCAT1	14438	chr8:127889917:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	RP11-89K10.1->chr8:127570120-127725660:+,PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding)	SNGM_ENDOMETRIUM	1	1	0.0262	TRUE	0	4	0	4	4	TRUE	ACH-000974
SNGM_ENDOMETRIUM	TATDN1--GSDMB	2	0	TATDN1	1434	chr8:125551266:-	GSDMB	23528	chr17:38066177:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SNGM_ENDOMETRIUM	1	1	0.0262	TRUE	0	1	0	3	1	TRUE	ACH-000974
SNGM_ENDOMETRIUM	TCEB1--STAU2	2	0	TCEB1	1211	chr8:74884312:-	STAU2	33997	chr8:74516098:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	TCEB1->chr8:74851404-74884522:-,transcription_elongation_factor_B_subunit_1,STAU2->chr8:74332604-74659943:-,staufen_double-stranded_RNA_binding_protein_2	SNGM_ENDOMETRIUM	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000974
SNGM_ENDOMETRIUM	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SNGM_ENDOMETRIUM	1	1	0.0262	FALSE	272	151	14	158	0	FALSE	ACH-000974
SNGM_ENDOMETRIUM	RP11-467J12.4--CASC16	1	2	RP11-467J12.4	2192	chr16:53081117:-	CASC16	7619	chr16:52682024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0131	0.0262	RP11-467J12.4->chr16:53069602-53086785:-,CASC16->cancer_susceptibility_candidate_16_(non-protein_coding),chr16:52586002-52686017:-	SNGM_ENDOMETRIUM	1	1	0.0393	TRUE	0	6	0	3	6	TRUE	ACH-000974
SNGM_ENDOMETRIUM	PISD--YWHAH	1	1	PISD	3545	chr22:32044087:-	YWHAH	24267	chr22:32352126:+	ONLY_REF_SPLICE	NO	208	266	0.01	0.01	0.0131	0.0131	GTEx_v2:{count=2;pct=0.02%;dist=Small_Intestine_-_Terminal_Ileum=1,Brain_-_Caudate_(basal_ganglia)=1},PISD->chr22:32014477-32058418:-,phosphatidylserine_decarboxylase,YWHAH->chr22:32340447-32353590:+,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_eta	SNGM_ENDOMETRIUM	0.01	0.01	0.0262	FALSE	0	2	0	2	0	FALSE	ACH-000974
KYSE520_OESOPHAGUS	CSE1L--ARFGEF2	232	133	CSE1L	19051	chr20:47707559:+	ARFGEF2	59036	chr20:47639588:+	ONLY_REF_SPLICE	YES	293	74	0.55	0.83	3.0853	1.7688	YOSHIHARA_TCGA_num_samples[BRCA:1|KIRC:1],{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[9619],CSE1L->Oncogene{Bushman},chr20:47662849-47713489:+,chromosome_segregation_1_like,ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+	KYSE520_OESOPHAGUS	0.55	0.83	4.8541	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	CABIN1--VSTM2A	209	87	CABIN1	13521	chr22:24456604:+	VSTM2A	54701	chr7:54614640:+	ONLY_REF_SPLICE	YES	119	0	0.71	1	2.7795	1.157	{Klijn_CCL:Head-Neck=1},CABIN1->calcineurin_binding_protein_1,chr22:24407642-24574596:+,VSTM2A->V-set_and_transmembrane_domain_containing_2A,chr7:54610018-54638773:+	KYSE520_OESOPHAGUS	0.71	1	3.9365	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	CCT6A--PSPH	192	114	CCT6A	1856	chr7:56120178:+	PSPH	16247	chr7:56110954:-	ONLY_REF_SPLICE	YES	1490	455	0.17	0.4	2.5534	1.5161	LOCAL_INVERSION:+:-:[26],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase	KYSE520_OESOPHAGUS	0.17	0.4	4.0695	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	PGS1--KRT17P2	107	52	PGS1	4628	chr17:76388746:+	KRT17P2	22324	chr17:18332236:+	ONLY_REF_SPLICE	YES	18	0	0.9	1	1.423	0.6915	PGS1->chr17:76374721-76421195:+,phosphatidylglycerophosphate_synthase_1,KRT17P2->chr17:18330175-18335162:+,keratin_17_pseudogene_2	KYSE520_OESOPHAGUS	0.9	1	2.1145	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MT-TA--MT-TN	101	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3432	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE520_OESOPHAGUS	1	1	1.3432	FALSE	369	2501	205	193	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	AKT3--CEP170	82	40	AKT3	22413	chr1:243736228:-	CEP170	63272	chr1:243299533:-	ONLY_REF_SPLICE	YES	46	36	0.73	0.77	1.0905	0.532	{Klijn_CCL:Head-Neck=1},AKT3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:243651535-244014381:-,v-akt_murine_thymoma_viral_oncogene_homolog_3,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	KYSE520_OESOPHAGUS	0.73	0.77	1.6225	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	CCT6A--PSPH	69	66	CCT6A	1856	chr7:56120178:+	PSPH	17379	chr7:56101847:-	ONLY_REF_SPLICE	YES	1490	431	0.08	0.24	0.9176	0.8777	LOCAL_INVERSION:+:-:[26],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase	KYSE520_OESOPHAGUS	0.08	0.24	1.7953	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MT-TA--MT-TC	73	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9708	0.1197	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE520_OESOPHAGUS	1	1	1.0905	FALSE	462	80	0	856	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	PITPNA--SLC43A2	74	5	PITPNA	4632	chr17:1461823:-	SLC43A2	29457	chr17:1496573:-	ONLY_REF_SPLICE	YES	20	26	0.8	0.75	0.9841	0.0665	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[6451],PITPNA->chr17:1421012-1466110:-,phosphatidylinositol_transfer_protein_alpha,SLC43A2->chr17:1472561-1532180:-,solute_carrier_family_43_member_2	KYSE520_OESOPHAGUS	0.75	0.8	1.0506	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MTMR4--SEPT4	62	20	MTMR4	5314	chr17:56590213:-	SEPT4	31582	chr17:56603674:-	ONLY_REF_SPLICE	YES	14	21	0.85	0.8	0.8245	0.266	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[2345],MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4,SEPT4->chr17:56597611-56618179:-,septin_4	KYSE520_OESOPHAGUS	0.8	0.85	1.0905	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-TE	58	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7713	0.0399	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE520_OESOPHAGUS	1	1	0.8112	FALSE	499	1288	110	792	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	TIMM23B--LINC00843	46	6	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6117	0.0798	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KYSE520_OESOPHAGUS	1	1	0.6915	TRUE	508	994	45	981	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	SS18L1--MYH15	41	22	SS18L1	1124	chr20:60718945:+	MYH15	31439	chr3:108195362:-	ONLY_REF_SPLICE	YES	27	0	0.7	1	0.5453	0.2926	SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,MYH15->chr3:108099216-108248169:-,myosin,_heavy_chain_15	KYSE520_OESOPHAGUS	0.7	1	0.8379	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	TNS3--INTS1	39	18	TNS3	8632	chr7:47546505:-	INTS1	68057	chr7:1522343:-	ONLY_REF_SPLICE	YES	121	81	0.32	0.41	0.5187	0.2394	TNS3->chr7:47314752-47622156:-,tensin_3,INTS1->chr7:1509913-1545489:-,integrator_complex_subunit_1	KYSE520_OESOPHAGUS	0.32	0.41	0.7581	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	CUX1--GINS3	35	19	CUX1	10206	chr7:101671425:+	GINS3	63070	chr16:58420525:+	ONLY_REF_SPLICE	YES	152	1	0.26	0.98	0.4655	0.2527	{Klijn_CCL:Head-Neck=1},CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	KYSE520_OESOPHAGUS	0.26	0.98	0.7182	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	CCT6A--PSPH	25	57	CCT6A	1856	chr7:56120178:+	PSPH	17427	chr7:56101799:-	ONLY_REF_SPLICE	YES	1490	435	0.05	0.16	0.3325	0.758	LOCAL_INVERSION:+:-:[26],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase	KYSE520_OESOPHAGUS	0.05	0.16	1.0905	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-TE	37	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4921	0.0399	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE520_OESOPHAGUS	1	1	0.532	FALSE	499	1288	110	792	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-TA--MT-TN	17	81	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.2261	1.0772	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE520_OESOPHAGUS	1	1	1.3033	FALSE	369	2501	205	193	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CCT6A--PSPH	22	57	CCT6A	1856	chr7:56120178:+	PSPH	17430	chr7:56101796:-	ONLY_REF_SPLICE	YES	1490	426	0.05	0.16	0.2926	0.758	LOCAL_INVERSION:+:-:[26],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase	KYSE520_OESOPHAGUS	0.05	0.16	1.0506	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND5--MT-ATP8	34	6	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8359	3	0	0.93	0.4522	0.0798	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.93	0.532	FALSE	43	37	8	105	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-TE	29	21	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.3857	0.2793	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE520_OESOPHAGUS	0.89	1	0.665	FALSE	499	1288	110	792	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-CO1	29	13	MT-ND4	1903	chrM:11662:+	MT-CO1	6015	chrM:6540:+	INCL_NON_REF_SPLICE	NO	24304	36565	0	0	0.3857	0.1729	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE520_OESOPHAGUS	0	0	0.5586	FALSE	19	92	11	16	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	SH3PXD2A--OBFC1	30	4	SH3PXD2A	1349	chr10:105614953:-	OBFC1	35985	chr10:105670380:-	ONLY_REF_SPLICE	YES	1	35	0.97	0.49	0.399	0.0532	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:2|LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[26999],SH3PXD2A->SH3_and_PX_domains_2A,chr10:105348285-105615301:-,OBFC1->chr10:105642300-105677963:-,oligonucleotide/oligosaccharide_binding_fold_containing_1	KYSE520_OESOPHAGUS	0.49	0.97	0.4522	TRUE	0	3	0	1	2	TRUE	ACH-000637
KYSE520_OESOPHAGUS	TUBGCP3--HCN1	26	12	TUBGCP3	1263	chr13:113242219:-	HCN1	30885	chr5:45645710:-	ONLY_REF_SPLICE	YES	17	0	0.69	1	0.3458	0.1596	TUBGCP3->chr13:113139325-113242481:-,tubulin_gamma_complex_associated_protein_3,HCN1->chr5:45259349-45696253:-,hyperpolarization_activated_cyclic_nucleotide_gated_potassium_channel_1	KYSE520_OESOPHAGUS	0.69	1	0.5054	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	27	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	19709	3	0	0.9	0.3591	0.0133	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.9	0.3724	FALSE	230	193	14	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MTMR4--SEPT4	21	25	MTMR4	5314	chr17:56590213:-	SEPT4	30917	chr17:56604339:-	ONLY_REF_SPLICE	YES	14	2	0.77	0.96	0.2793	0.3325	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[2345],MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4,SEPT4->chr17:56597611-56618179:-,septin_4	KYSE520_OESOPHAGUS	0.77	0.96	0.6118	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	TIMM23--RP11-464F9.1	26	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	108	7	0.2	0.79	0.3458	0.0133	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KYSE520_OESOPHAGUS	0.2	0.79	0.3591	TRUE	519	3926	326	965	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-TA--MT-TN	10	53	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.133	0.7048	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE520_OESOPHAGUS	1	1	0.8378	FALSE	369	2501	205	193	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	RP11-123O10.4--GRIP1	22	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2926	0.0665	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYSE520_OESOPHAGUS	1	1	0.3591	FALSE	416	2512	207	587	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-TA--MT-TN	17	20	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2261	0.266	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE520_OESOPHAGUS	1	1	0.4921	FALSE	369	2501	205	193	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	ZNF654--HMGB2	22	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2926	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KYSE520_OESOPHAGUS	1	1	0.2926	TRUE	0	0	0	518	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-TE	12	35	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.1596	0.4655	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE520_OESOPHAGUS	0.89	1	0.6251	FALSE	499	1288	110	792	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	18	5	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	27228	0	0	1	0.2394	0.0665	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	1	0.3059	FALSE	231	217	16	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	18	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19638	3	0	0.87	0.2394	0.0266	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.87	0.266	FALSE	230	198	14	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-TE	3	55	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.0399	0.7314	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE520_OESOPHAGUS	0.95	1	0.7713	FALSE	499	1288	110	792	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-TA--MT-TN	7	39	MT-TA	1054	chrM:5602:-	MT-TN	4092	chrM:5707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0931	0.5187	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE520_OESOPHAGUS	1	1	0.6118	FALSE	369	2501	205	193	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-ND5	16	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2128	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KYSE520_OESOPHAGUS	1	1	0.2128	FALSE	101	855	57	72	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-TA--MT-TN	6	36	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0798	0.4788	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE520_OESOPHAGUS	1	1	0.5586	FALSE	369	2501	205	193	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-TA--MT-TN	8	28	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1064	0.3724	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE520_OESOPHAGUS	1	1	0.4788	FALSE	369	2501	205	193	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-TE	8	27	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1064	0.3591	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE520_OESOPHAGUS	1	1	0.4655	FALSE	499	1288	110	792	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-ND5	13	4	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	3195	1	0.01	0.1729	0.0532	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KYSE520_OESOPHAGUS	0.01	1	0.2261	FALSE	101	855	57	72	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CCT6A--PSPH	3	42	CCT6A	1356	chr7:56119678:+	PSPH	17430	chr7:56101796:-	ONLY_REF_SPLICE	YES	1780	426	0.02	0.1	0.0399	0.5586	LOCAL_INVERSION:+:-:[26],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase	KYSE520_OESOPHAGUS	0.02	0.1	0.5985	TRUE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-TE	5	34	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	7	0	0.85	1	0.0665	0.4522	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE520_OESOPHAGUS	0.85	1	0.5187	FALSE	499	1288	110	792	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CSE1L--ARFGEF2	1	49	CSE1L	19051	chr20:47707559:+	ARFGEF2	60167	chr20:47641850:+	ONLY_REF_SPLICE	YES	293	144	0.15	0.26	0.0133	0.6516	YOSHIHARA_TCGA_num_samples[BRCA:1|KIRC:1],{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[9619],CSE1L->Oncogene{Bushman},chr20:47662849-47713489:+,chromosome_segregation_1_like,ARFGEF2->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_2,chr20:47538427-47653230:+	KYSE520_OESOPHAGUS	0.15	0.26	0.6649	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND5--MT-ATP8	11	9	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.1463	0.1197	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0.91	1	0.266	FALSE	43	37	8	105	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-CO1	9	15	MT-ND4	1773	chrM:11532:+	MT-CO1	5916	chrM:6441:+	INCL_NON_REF_SPLICE	YES	25205	34766	0	0	0.1197	0.1995	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE520_OESOPHAGUS	0	0	0.3192	FALSE	19	92	11	16	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	RP11-444D3.1--SOX5	12	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1596	0.0266	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KYSE520_OESOPHAGUS	1	1	0.1862	TRUE	477	1352	189	275	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	RP11-680G10.1--GSE1	11	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	8	1	0.68	0.1463	0.0798	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE520_OESOPHAGUS	0.68	1	0.2261	TRUE	458	1351	185	561	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-TA--MT-TC	10	9	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.133	0.1197	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE520_OESOPHAGUS	1	1	0.2527	FALSE	462	80	0	856	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CCT6A--PSPH	8	15	CCT6A	1856	chr7:56120178:+	PSPH	19477	chr7:56099670:-	ONLY_REF_SPLICE	YES	1490	381	0.02	0.06	0.1064	0.1995	LOCAL_INVERSION:+:-:[26],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase	KYSE520_OESOPHAGUS	0.02	0.06	0.3059	TRUE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CCT6A--PSPH	1	42	CCT6A	1356	chr7:56119678:+	PSPH	17427	chr7:56101799:-	ONLY_REF_SPLICE	YES	1780	435	0.02	0.09	0.0133	0.5586	LOCAL_INVERSION:+:-:[26],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase	KYSE520_OESOPHAGUS	0.02	0.09	0.5719	TRUE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-TE	6	21	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	7	0	0.79	1	0.0798	0.2793	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE520_OESOPHAGUS	0.79	1	0.3591	FALSE	499	1288	110	792	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND5--MT-ATP8	10	4	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9696	56	0	0.2	0.133	0.0532	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.2	0.1862	FALSE	43	37	8	105	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-TA--MT-TN	11	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1463	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE520_OESOPHAGUS	1	1	0.1463	FALSE	369	2501	205	193	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	C15orf57--CBX3	9	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	30	38	0.35	0.3	0.1197	0.0931	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KYSE520_OESOPHAGUS	0.3	0.35	0.2128	TRUE	267	562	48	632	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	TAF4--HHLA2	9	5	TAF4	2360	chr20:60639507:-	HHLA2	33666	chr3:108070635:+	ONLY_REF_SPLICE	YES	23	0	0.38	1	0.1197	0.0665	{Klijn_CCL:Head-Neck=1},TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,HHLA2->HERV-H_LTR-associating_2,chr3:108015376-108097132:+	KYSE520_OESOPHAGUS	0.38	1	0.1862	FALSE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	AC004158.2--WDR59	10	0	AC004158.2	1118	chr16:72698791:-	WDR59	46043	chr16:74927710:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.133	0	AC004158.2->chr16:72459384-72698908:-,WDR59->WD_repeat_domain_59,chr16:74907468-75034071:-	KYSE520_OESOPHAGUS	1	1	0.133	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MT-TA--MT-TN	10	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.133	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE520_OESOPHAGUS	1	1	0.133	FALSE	369	2501	205	193	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ATP6--MT-CO1	9	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1197	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE520_OESOPHAGUS	1	1	0.1197	FALSE	183	104	9	328	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CDC42EP3--AC012457.2	8	3	CDC42EP3	9658	chr2:37898569:-	AC012457.2	20666	chr2:25431843:+	ONLY_REF_SPLICE	YES	33	0	0.25	1	0.1064	0.0399	CDC42EP3->CDC42_effector_protein_3,chr2:37869032-37965611:-,AC012457.2->chr2:25427182-25432071:+	KYSE520_OESOPHAGUS	0.25	1	0.1463	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	7	6	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	25202	3	0	0.81	0.0931	0.0798	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.81	0.1729	FALSE	231	217	16	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-TE	3	21	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0.2793	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE520_OESOPHAGUS	1	1	0.3192	FALSE	499	1288	110	792	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MTMR4--SEPT4	3	20	MTMR4	5314	chr17:56590213:-	SEPT4	31485	chr17:56603771:-	ONLY_REF_SPLICE	YES	14	20	0.62	0.53	0.0399	0.266	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[2345],MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4,SEPT4->chr17:56597611-56618179:-,septin_4	KYSE520_OESOPHAGUS	0.53	0.62	0.3059	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	HIP1--MIB2	7	3	HIP1	1162	chr7:75368119:-	MIB2	49250	chr1:1563653:+	ONLY_REF_SPLICE	YES	3	144	0.77	0.06	0.0931	0.0399	HIP1->Oncogene{Bushman},chr7:75162621-75368280:-,huntingtin_interacting_protein_1,MIB2->Oncogene{Bushman},chr1:1550795-1565990:+,mindbomb_E3_ubiquitin_protein_ligase_2	KYSE520_OESOPHAGUS	0.06	0.77	0.133	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-ND5	7	2	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	1007	1	0.01	0.0931	0.0266	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KYSE520_OESOPHAGUS	0.01	1	0.1197	FALSE	101	855	57	72	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	6	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	25728	0	0	1	0.0798	0.0665	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	1	0.1463	FALSE	231	217	16	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-ND5	6	5	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	6208	1	0	0.0798	0.0665	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KYSE520_OESOPHAGUS	0	1	0.1463	FALSE	101	855	57	72	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	TAF4--HHLA2	6	5	TAF4	2360	chr20:60639507:-	HHLA2	32588	chr3:108047117:+	ONLY_REF_SPLICE	YES	23	0	0.32	1	0.0798	0.0665	{Klijn_CCL:Head-Neck=1},TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,HHLA2->HERV-H_LTR-associating_2,chr3:108015376-108097132:+	KYSE520_OESOPHAGUS	0.32	1	0.1463	FALSE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-CO1	6	4	MT-ND4	1245	chrM:11004:+	MT-CO1	6028	chrM:6553:+	INCL_NON_REF_SPLICE	YES	20526	37696	0	0	0.0798	0.0532	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE520_OESOPHAGUS	0	0	0.133	FALSE	19	89	11	16	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-TE	7	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0931	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE520_OESOPHAGUS	1	1	0.0931	FALSE	499	1288	110	792	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-TA--MT-TN	7	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0931	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE520_OESOPHAGUS	1	1	0.0931	FALSE	369	2501	205	193	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-CO1	3	15	MT-ND4	1992	chrM:11751:+	MT-CO1	6021	chrM:6546:+	INCL_NON_REF_SPLICE	YES	22956	37236	0	0	0.0399	0.1995	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE520_OESOPHAGUS	0	0	0.2394	FALSE	19	92	11	16	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	6	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	23158	3	0	0.73	0.0798	0.0266	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.73	0.1064	FALSE	231	205	14	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-ND5	6	2	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	1	3194	0.89	0	0.0798	0.0266	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KYSE520_OESOPHAGUS	0	0.89	0.1064	FALSE	101	855	57	72	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	5	5	MT-ND4	1779	chrM:11538:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	25120	56	0	0.15	0.0665	0.0665	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.15	0.133	FALSE	231	217	16	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0798	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE520_OESOPHAGUS	1	1	0.0798	FALSE	183	104	9	328	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-CO1	5	4	MT-ND4	1314	chrM:11073:+	MT-CO1	6305	chrM:6830:+	INCL_NON_REF_SPLICE	YES	26028	38273	0	0	0.0665	0.0532	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE520_OESOPHAGUS	0	0	0.1197	FALSE	19	90	11	16	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND5--MT-ATP8	4	8	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9	56	0.57	0.18	0.0532	0.1064	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0.18	0.57	0.1596	FALSE	43	37	8	105	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0798	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE520_OESOPHAGUS	1	1	0.0798	FALSE	292	1546	117	613	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	6	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0798	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE520_OESOPHAGUS	1	1	0.0798	FALSE	515	4851	409	746	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CCT6A--PSPH	1	19	CCT6A	1856	chr7:56120178:+	PSPH	19400	chr7:56099747:-	ONLY_REF_SPLICE	YES	1490	472	0.01	0.04	0.0133	0.2527	LOCAL_INVERSION:+:-:[26],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase	KYSE520_OESOPHAGUS	0.01	0.04	0.266	TRUE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	4	7	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	24948	0	0	1	0.0532	0.0931	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	1	0.1463	FALSE	231	217	16	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-CO1	4	7	MT-ND4	1499	chrM:11258:+	MT-CO1	6021	chrM:6546:+	INCL_NON_REF_SPLICE	YES	25414	37236	0	0	0.0532	0.0931	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE520_OESOPHAGUS	0	0	0.1463	FALSE	19	92	11	16	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-CO1	3	11	MT-ND4	1915	chrM:11674:+	MT-CO1	6077	chrM:6602:+	INCL_NON_REF_SPLICE	YES	24461	37235	0	0	0.0399	0.1463	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE520_OESOPHAGUS	0	0	0.1862	FALSE	19	92	11	16	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	RP11-120D5.1--MID1	5	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	19	0.89	0.3	0.0665	0.0399	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KYSE520_OESOPHAGUS	0.3	0.89	0.1064	FALSE	16	356	14	466	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	5	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19638	56	0	0.11	0.0665	0.0266	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.11	0.0931	FALSE	230	198	14	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	5	2	MT-ND4	1200	chrM:10959:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	19051	0	0	1	0.0665	0.0266	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	1	0.0931	FALSE	230	193	14	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-CO1	3	10	MT-ND4	1747	chrM:11506:+	MT-CO1	6021	chrM:6546:+	INCL_NON_REF_SPLICE	YES	24629	37236	0	0	0.0399	0.133	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE520_OESOPHAGUS	0	0	0.1729	FALSE	19	92	11	16	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-TA--MT-TC	3	10	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0.133	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE520_OESOPHAGUS	1	1	0.1729	FALSE	462	80	0	856	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	SRC--RPN2	4	6	SRC	10328	chr20:36024714:+	RPN2	31845	chr20:35842163:+	ONLY_REF_SPLICE	YES	61	682	0.14	0.01	0.0532	0.0798	SRC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,SRC_proto-oncogene,_non-receptor_tyrosine_kinase,chr20:35973088-36034453:+,RPN2->chr20:35806813-35870022:+,ribophorin_II	KYSE520_OESOPHAGUS	0.01	0.14	0.133	TRUE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CCT6A--PSPH	1	17	CCT6A	1356	chr7:56119678:+	PSPH	19400	chr7:56099747:-	ONLY_REF_SPLICE	YES	1780	472	0.01	0.04	0.0133	0.2261	LOCAL_INVERSION:+:-:[26],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase	KYSE520_OESOPHAGUS	0.01	0.04	0.2394	TRUE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	5	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19709	3	0	0.67	0.0665	0.0133	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.67	0.0798	FALSE	230	193	14	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	4	5	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	YES	25202	930	0	0.01	0.0532	0.0665	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.01	0.1197	FALSE	231	217	16	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-ND5	4	5	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	5933	1	0	0.0532	0.0665	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KYSE520_OESOPHAGUS	0	1	0.1197	FALSE	101	855	57	72	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MTMR4--SEPT4	5	1	MTMR4	2128	chr17:56593941:-	SEPT4	31582	chr17:56603674:-	ONLY_REF_SPLICE	YES	1	21	0.86	0.22	0.0665	0.0133	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[2345],MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4,SEPT4->chr17:56597611-56618179:-,septin_4	KYSE520_OESOPHAGUS	0.22	0.86	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	NRIP1--AF127936.7	5	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.0665	0.0133	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE520_OESOPHAGUS	0.46	1	0.0798	FALSE	164	806	69	479	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	RP11-680G10.1--GSE1	4	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	22	1	0.29	0.0532	0.0665	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE520_OESOPHAGUS	0.29	1	0.1197	TRUE	465	1949	224	605	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	1	1	0.0665	FALSE	351	233	23	137	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	4	4	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	25031	1	0	0.89	0.0532	0.0532	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.89	0.1064	FALSE	231	205	14	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	4	4	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	27815	812	0	0.01	0.0532	0.0532	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.01	0.1064	FALSE	231	217	16	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-TE	5	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE520_OESOPHAGUS	1	1	0.0665	FALSE	499	1288	110	792	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ATP6--MT-CO1	3	7	MT-ATP6	1543	chrM:9069:+	MT-CO1	5325	chrM:6547:+	INCL_NON_REF_SPLICE	YES	5184	37402	0	0	0.0399	0.0931	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE520_OESOPHAGUS	0	0	0.133	FALSE	183	104	9	328	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ATP6--MT-CO1	3	7	MT-ATP6	1265	chrM:8791:+	MT-CO1	4998	chrM:6220:+	INCL_NON_REF_SPLICE	NO	21375	28700	0	0	0.0399	0.0931	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE520_OESOPHAGUS	0	0	0.133	FALSE	183	104	9	328	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	3	7	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	NO	24348	866	0	0.01	0.0399	0.0931	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.01	0.133	FALSE	231	217	16	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	4	3	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	20605	0	0	1	0.0532	0.0399	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	1	0.0931	FALSE	231	204	14	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CCT6A--PSPH	4	2	CCT6A	1856	chr7:56120178:+	PSPH	25189	chr7:56079562:-	ONLY_REF_SPLICE	YES	1490	372	0	0.02	0.0532	0.0266	LOCAL_INVERSION:+:-:[26],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase	KYSE520_OESOPHAGUS	0	0.02	0.0798	FALSE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ATP6--MT-CO1	3	6	MT-ATP6	1295	chrM:8821:+	MT-CO1	5307	chrM:6529:+	INCL_NON_REF_SPLICE	NO	21296	34934	0	0	0.0399	0.0798	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE520_OESOPHAGUS	0	0	0.1197	FALSE	183	104	9	328	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	3	6	MT-ND4	1844	chrM:11603:+	MT-ATP8	5503	chrM:8490:+	INCL_NON_REF_SPLICE	YES	24716	1110	0	0.01	0.0399	0.0798	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.01	0.1197	FALSE	231	217	16	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	3	6	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	24268	56	0	0.14	0.0399	0.0798	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.14	0.1197	FALSE	231	217	16	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	3	6	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	24859	0	0	1	0.0399	0.0798	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	1	0.1197	FALSE	231	217	16	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND5--MT-ATP8	4	2	MT-ND5	1648	chrM:12984:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	9334	56	0	0.1	0.0532	0.0266	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.1	0.0798	FALSE	42	36	7	104	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND5--MT-ATP8	4	2	MT-ND5	1570	chrM:12906:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9379	3	0	0.67	0.0532	0.0266	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.67	0.0798	FALSE	42	36	7	104	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND5--MT-ATP8	3	6	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	7289	1	0	0.9	0.0399	0.0798	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.9	0.1197	FALSE	43	37	8	105	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MTMR4--SEPT4	4	2	MTMR4	3849	chr17:56591724:-	SEPT4	31582	chr17:56603674:-	ONLY_REF_SPLICE	YES	6	21	0.5	0.22	0.0532	0.0266	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[2345],MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4,SEPT4->chr17:56597611-56618179:-,septin_4	KYSE520_OESOPHAGUS	0.22	0.5	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	DHCR24--USP24	4	1	DHCR24	10105	chr1:55317876:-	USP24	63788	chr1:55551711:-	ONLY_REF_SPLICE	YES	253	40	0.02	0.11	0.0532	0.0133	DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-,USP24->Oncogene{Bushman},chr1:55532032-55680786:-,ubiquitin_specific_peptidase_24	KYSE520_OESOPHAGUS	0.02	0.11	0.0665	TRUE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ATP6--MT-CO1	4	1	MT-ATP6	1153	chrM:8679:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	15793	33581	0	0	0.0532	0.0133	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE520_OESOPHAGUS	0	0	0.0665	FALSE	183	104	9	328	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	3	5	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	26127	0	0	1	0.0399	0.0665	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	1	0.1064	FALSE	231	217	16	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MTMR4--SEPT4	4	1	MTMR4	2128	chr17:56593941:-	SEPT4	30917	chr17:56604339:-	ONLY_REF_SPLICE	YES	1	2	0.83	0.71	0.0532	0.0133	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:-:[2345],MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4,SEPT4->chr17:56597611-56618179:-,septin_4	KYSE520_OESOPHAGUS	0.71	0.83	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	RP11-444D3.1--SOX5	4	1	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0532	0.0133	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KYSE520_OESOPHAGUS	1	1	0.0665	TRUE	274	363	69	150	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	C20orf27--MT-ND4L	4	0	C20orf27	7217	chr20:3734540:-	MT-ND4L	10604	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0532	0	C20orf27->chr20:3734155-3749034:-,chromosome_20_open_reading_frame_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE520_OESOPHAGUS	1	1	0.0532	FALSE	0	0	0	6	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	3	4	MT-ND4	1477	chrM:11236:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	25879	3	0	0.7	0.0399	0.0532	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.7	0.0931	FALSE	231	217	16	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	3	4	MT-ND4	1540	chrM:11299:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	28189	194	0	0.03	0.0399	0.0532	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.03	0.0931	FALSE	231	217	16	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-TE	4	0	MT-ND6	1046	chrM:14628:-	MT-TE	4575	chrM:14693:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0532	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE520_OESOPHAGUS	1	1	0.0532	FALSE	499	1288	110	792	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0532	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE520_OESOPHAGUS	1	1	0.0532	FALSE	499	1288	110	792	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-TE	4	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0532	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KYSE520_OESOPHAGUS	1	1	0.0532	FALSE	499	1288	110	792	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-TA--MT-TN	4	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0532	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE520_OESOPHAGUS	1	1	0.0532	FALSE	369	2501	205	193	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	RP11-123O10.4--GRIP1	3	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0.0532	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYSE520_OESOPHAGUS	1	1	0.0931	FALSE	93	270	15	244	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	SS18L1--MYH15	1	12	SS18L1	1124	chr20:60718945:+	MYH15	32558	chr3:108189694:-	ONLY_REF_SPLICE	YES	27	2	0.33	0.87	0.0133	0.1596	SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,MYH15->chr3:108099216-108248169:-,myosin,_heavy_chain_15	KYSE520_OESOPHAGUS	0.33	0.87	0.1729	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	XKR9--RP11-326E22.1	3	3	XKR9	8344	chr8:71619388:+	RP11-326E22.1	21087	chr8:72111375:+	ONLY_REF_SPLICE	YES	7	0	0.46	1	0.0399	0.0399	GTEx_FI:{Brain=[count:4=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Liver=[count:1=pct:0.8]},XKR9->XK_related_9,chr8:71581600-71702606:+,RP11-326E22.1->chr8:72067692-72116458:+	KYSE520_OESOPHAGUS	0.46	1	0.0798	TRUE	5	29	0	13	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CCT6A--PSPH	3	2	CCT6A	1856	chr7:56120178:+	PSPH	24040	chr7:56082864:-	ONLY_REF_SPLICE	YES	1490	445	0	0.01	0.0399	0.0266	LOCAL_INVERSION:+:-:[26],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase	KYSE520_OESOPHAGUS	0	0.01	0.0665	FALSE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CUX1--GINS3	3	2	CUX1	10206	chr7:101671425:+	GINS3	64820	chr16:58426134:+	ONLY_REF_SPLICE	YES	152	2	0.03	0.71	0.0399	0.0266	{Klijn_CCL:Head-Neck=1},CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	KYSE520_OESOPHAGUS	0.03	0.71	0.0665	TRUE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	HIP1--MIB2	3	2	HIP1	1162	chr7:75368119:-	MIB2	49466	chr1:1563869:+	ONLY_REF_SPLICE	YES	3	120	0.62	0.04	0.0399	0.0266	HIP1->Oncogene{Bushman},chr7:75162621-75368280:-,huntingtin_interacting_protein_1,MIB2->Oncogene{Bushman},chr1:1550795-1565990:+,mindbomb_E3_ubiquitin_protein_ligase_2	KYSE520_OESOPHAGUS	0.04	0.62	0.0665	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	3	2	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	NO	19811	82	0	0.06	0.0399	0.0266	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.06	0.0665	FALSE	231	204	14	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	3	2	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	NO	19720	0	0	1	0.0399	0.0266	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	1	0.0665	FALSE	230	197	14	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND5--MT-ATP8	3	2	MT-ND5	1628	chrM:12964:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	9848	0	0	1	0.0399	0.0266	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	1	0.0665	FALSE	42	36	7	104	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND5--MT-ATP8	3	2	MT-ND5	1770	chrM:13106:+	MT-ATP8	5861	chrM:8414:+	INCL_NON_REF_SPLICE	YES	8181	0	0	1	0.0399	0.0266	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	1	0.0665	FALSE	43	37	8	105	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND6--MT-ND5	3	2	MT-ND6	1463	chrM:14211:-	MT-ND5	6283	chrM:14094:+	INCL_NON_REF_SPLICE	YES	0	3016	1	0	0.0399	0.0266	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	KYSE520_OESOPHAGUS	0	1	0.0665	FALSE	101	855	57	72	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	16436	0	0	1	0.0399	0.0133	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE520_OESOPHAGUS	0	1	0.0532	FALSE	182	97	9	327	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-CO1	3	1	MT-ND4	1235	chrM:10994:+	MT-CO1	6597	chrM:7122:+	INCL_NON_REF_SPLICE	YES	20265	30812	0	0	0.0399	0.0133	LOCAL_REARRANGEMENT:+:[3315],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE520_OESOPHAGUS	0	0	0.0532	FALSE	19	89	11	16	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND5--MT-ATP8	3	1	MT-ND5	1701	chrM:13037:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	8733	554	0	0.01	0.0399	0.0133	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	0	0.01	0.0532	FALSE	42	36	7	104	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	APP--MT-CO3	3	0	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	KYSE520_OESOPHAGUS	1	1	0.0399	FALSE	0	0	0	26	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE520_OESOPHAGUS	1	1	0.0399	FALSE	183	104	9	328	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-ND4--MT-ATP8	3	0	MT-ND4	1195	chrM:10954:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE520_OESOPHAGUS	1	1	0.0399	FALSE	230	193	14	283	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE520_OESOPHAGUS	1	1	0.0399	FALSE	462	80	0	856	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-TA--MT-TN	3	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE520_OESOPHAGUS	1	1	0.0399	FALSE	369	2501	205	193	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	KYSE520_OESOPHAGUS	1	1	0.0399	FALSE	369	2501	205	193	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	NQO1--UBB	3	0	NQO1	2684	chr16:69752273:-	UBB	13620	chr17:16285361:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0399	0	NQO1->NAD(P)H_quinone_dehydrogenase_1,Oncogene{Bushman},chr16:69740899-69760854:-,UBB->chr17:16284112-16286059:+,ubiquitin_B	KYSE520_OESOPHAGUS	1	1	0.0399	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	PRR16--CTD-2334D19.1	3	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0399	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	KYSE520_OESOPHAGUS	1	1	0.0399	FALSE	56	216	12	147	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	SS18L1--MYH15	2	4	SS18L1	1124	chr20:60718945:+	MYH15	34364	chr3:108183661:-	ONLY_REF_SPLICE	YES	27	23	0.18	0.21	0.0266	0.0532	SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,MYH15->chr3:108099216-108248169:-,myosin,_heavy_chain_15	KYSE520_OESOPHAGUS	0.18	0.21	0.0798	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	ANO7--FARP2	2	2	ANO7	20467	chr2:242157796:+	FARP2	51409	chr2:242396162:+	ONLY_REF_SPLICE	YES	0	19	1	0.17	0.0266	0.0266	ANO7->anoctamin_7,chr2:242127924-242164792:+,FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+	KYSE520_OESOPHAGUS	0.17	1	0.0532	TRUE	0	0	0	2	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	EGFR--GNAS	2	2	EGFR	1345	chr7:55087058:+	GNAS	61107	chr20:57470667:+	ONLY_REF_SPLICE	YES	1100	1025	0	0	0.0266	0.0266	GTEx&tcga_normals:1/3694=0.03%,EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	KYSE520_OESOPHAGUS	0	0	0.0532	FALSE	0	2	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	GALNT14--EML4	2	2	GALNT14	9877	chr2:31348020:-	EML4	37777	chr2:42488261:+	ONLY_REF_SPLICE	YES	34	57	0.11	0.07	0.0266	0.0266	GALNT14->chr2:31133333-31378068:-,polypeptide_N-acetylgalactosaminyltransferase_14,EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4	KYSE520_OESOPHAGUS	0.07	0.11	0.0532	TRUE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CCT6A--PSPH	1	5	CCT6A	1856	chr7:56120178:+	PSPH	21759	chr7:56087427:-	ONLY_REF_SPLICE	NO	1490	681	0	0.01	0.0133	0.0665	LOCAL_INVERSION:+:-:[26],CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+,PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase	KYSE520_OESOPHAGUS	0	0.01	0.0798	FALSE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	ARHGAP29--ENOSF1	2	0	ARHGAP29	27533	chr1:94640160:-	ENOSF1	38722	chr18:706578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	ARHGAP29->Rho_GTPase_activating_protein_29,chr1:94614544-94740624:-,ENOSF1->chr18:670324-712676:-,enolase_superfamily_member_1	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	C17orf76-AS1--RPS3	2	0	C17orf76-AS1	1593	chr17:16342728:+	RPS3	18389	chr11:75115716:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	C17orf76-AS1->chr17:16342136-16381992:+,RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	CSNK1G1--TMCC1	2	0	CSNK1G1	2661	chr15:64592518:-	TMCC1	26549	chr3:129599402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	CSNK1G1->casein_kinase_1_gamma_1,chr15:64457716-64648442:-,TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	CTB-78F1.2--TENM2	2	0	CTB-78F1.2	1045	chr5:167148412:+	TENM2	14028	chr5:167379593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	NEIGHBORS_OVERLAP:+:+:[7761],CTB-78F1.2->chr5:167148368-167156129:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	KYSE520_OESOPHAGUS	1	1	0.0266	FALSE	1	4	0	8	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CUX1--GINS3	2	0	CUX1	10206	chr7:101671425:+	GINS3	69938	chr16:58438403:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	{Klijn_CCL:Head-Neck=1},CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	DUSP22--SET	2	0	DUSP22	13386	chr6:348841:+	SET	23560	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	DUSP22->chr6:291630-351355:+,dual_specificity_phosphatase_22,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MBTD1--SRSF4	2	0	MBTD1	17118	chr17:49269564:-	SRSF4	26351	chr1:29495150:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1,SRSF4->chr1:29474255-29508499:-,serine/arginine-rich_splicing_factor_4	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	MGST1--RPS27A	2	0	MGST1	5873	chr12:16507204:+	RPS27A	25404	chr2:55459944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	MGST1->chr12:16500076-16762193:+,microsomal_glutathione_S-transferase_1,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	2	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	NQO1--UBB	2	0	NQO1	2684	chr16:69752273:-	UBB	13475	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	NQO1->NAD(P)H_quinone_dehydrogenase_1,Oncogene{Bushman},chr16:69740899-69760854:-,UBB->chr17:16284112-16286059:+,ubiquitin_B	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE520_OESOPHAGUS	1	1	0.0266	FALSE	25	145	6	90	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE520_OESOPHAGUS	1	1	0.0266	FALSE	125	705	46	456	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	SH3PXD2A--OBFC1	1	4	SH3PXD2A	1349	chr10:105614953:-	OBFC1	37081	chr10:105664914:-	ONLY_REF_SPLICE	YES	1	39	0.83	0.11	0.0133	0.0532	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:2|LUAD:1|LUSC:1],LOCAL_REARRANGEMENT:-:[26999],SH3PXD2A->SH3_and_PX_domains_2A,chr10:105348285-105615301:-,OBFC1->chr10:105642300-105677963:-,oligonucleotide/oligosaccharide_binding_fold_containing_1	KYSE520_OESOPHAGUS	0.11	0.83	0.0665	TRUE	0	4	0	1	2	TRUE	ACH-000637
KYSE520_OESOPHAGUS	TMPRSS5--STK39	2	0	TMPRSS5	10673	chr11:113560487:-	STK39	26744	chr2:168931741:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0266	0	TMPRSS5->chr11:113558272-113577095:-,transmembrane_protease,_serine_5,STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39	KYSE520_OESOPHAGUS	1	1	0.0266	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	NUP155--CTC-313D10.1	1	3	NUP155	27954	chr5:37304841:-	CTC-313D10.1	44091	chr5:113915002:+	ONLY_REF_SPLICE	YES	31	0	0.11	1	0.0133	0.0399	NUP155->chr5:37288239-37371283:-,nucleoporin_155kDa,CTC-313D10.1->chr5:113911738-113915667:+	KYSE520_OESOPHAGUS	0.11	1	0.0532	TRUE	0	0	0	1	0	TRUE	ACH-000637
KYSE520_OESOPHAGUS	TAF4--HHLA2	1	3	TAF4	2360	chr20:60639507:-	HHLA2	34756	chr3:108072274:+	ONLY_REF_SPLICE	YES	23	0	0.15	1	0.0133	0.0399	{Klijn_CCL:Head-Neck=1},TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-,HHLA2->HERV-H_LTR-associating_2,chr3:108015376-108097132:+	KYSE520_OESOPHAGUS	0.15	1	0.0532	FALSE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	GALNT14--EML4	1	2	GALNT14	5157	chr2:31360824:-	EML4	37777	chr2:42488261:+	ONLY_REF_SPLICE	YES	33	57	0.08	0.05	0.0133	0.0266	GALNT14->chr2:31133333-31378068:-,polypeptide_N-acetylgalactosaminyltransferase_14,EML4->Oncogene{Bushman},chr2:42396490-42559688:+,echinoderm_microtubule_associated_protein_like_4	KYSE520_OESOPHAGUS	0.05	0.08	0.0399	TRUE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CAPZA2--RPS27A	1	1	CAPZA2	3371	chr7:116502704:+	RPS27A	26292	chr2:55459944:+	ONLY_REF_SPLICE	YES	50	34	0.04	0.06	0.0133	0.0133	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	KYSE520_OESOPHAGUS	0.04	0.06	0.0266	TRUE	0	0	0	3	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CAPZA2--SRP9	1	1	CAPZA2	3371	chr7:116502704:+	SRP9	25493	chr1:225965637:+	ONLY_REF_SPLICE	YES	50	37	0.04	0.05	0.0133	0.0133	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	KYSE520_OESOPHAGUS	0.04	0.05	0.0266	TRUE	0	0	0	9	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CHD2--SRSF1	1	1	CHD2	6529	chr15:93444529:+	SRSF1	62155	chr17:56082402:-	ONLY_REF_SPLICE	YES	65	383	0.03	0.01	0.0133	0.0133	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	KYSE520_OESOPHAGUS	0.01	0.03	0.0266	FALSE	1	2	0	9	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CSE1L--TNPO1	1	1	CSE1L	3351	chr20:47679881:+	TNPO1	34648	chr5:72161423:+	ONLY_REF_SPLICE	YES	509	168	0	0.01	0.0133	0.0133	CSE1L->Oncogene{Bushman},chr20:47662849-47713489:+,chromosome_segregation_1_like,TNPO1->chr5:72112139-72212560:+,transportin_1	KYSE520_OESOPHAGUS	0	0.01	0.0266	FALSE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	CUX1--GINS3	1	1	CUX1	10206	chr7:101671425:+	GINS3	68537	chr16:58437002:+	ONLY_REF_SPLICE	YES	152	60	0.01	0.03	0.0133	0.0133	{Klijn_CCL:Head-Neck=1},CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	KYSE520_OESOPHAGUS	0.01	0.03	0.0266	FALSE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	HIP1--MIB2	1	1	HIP1	1162	chr7:75368119:-	MIB2	50110	chr1:1564513:+	ONLY_REF_SPLICE	NO	3	99	0.4	0.02	0.0133	0.0133	HIP1->Oncogene{Bushman},chr7:75162621-75368280:-,huntingtin_interacting_protein_1,MIB2->Oncogene{Bushman},chr1:1550795-1565990:+,mindbomb_E3_ubiquitin_protein_ligase_2	KYSE520_OESOPHAGUS	0.02	0.4	0.0266	TRUE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	KIF13A--NUP153	1	1	KIF13A	1570	chr6:17987285:-	NUP153	52951	chr6:17676001:-	ONLY_REF_SPLICE	YES	10	45	0.17	0.04	0.0133	0.0133	NEIGHBORS[52758],KIF13A->chr6:17759414-17987854:-,kinesin_family_member_13A,NUP153->chr6:17615269-17706656:-,nucleoporin_153kDa	KYSE520_OESOPHAGUS	0.04	0.17	0.0266	FALSE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	MICU1--MCU	1	1	MICU1	5854	chr10:74293504:-	MCU	34745	chr10:74594117:+	ONLY_REF_SPLICE	YES	90	43	0.02	0.04	0.0133	0.0133	GTEx_v2:{count=2;pct=0.02%;dist=Stomach=1,Lung=1},LOCAL_INVERSION:-:+:[65990],MICU1->chr10:74127098-74385899:-,mitochondrial_calcium_uptake_1,MCU->chr10:74451889-74647452:+,mitochondrial_calcium_uniporter	KYSE520_OESOPHAGUS	0.02	0.04	0.0266	TRUE	0	1	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	NQO1--TIMP2	1	1	NQO1	2684	chr16:69752273:-	TIMP2	17433	chr17:76853728:-	ONLY_REF_SPLICE	YES	3695	447	0	0	0.0133	0.0133	GTEx&tcga_normals:1/3694=0.03%,NQO1->NAD(P)H_quinone_dehydrogenase_1,Oncogene{Bushman},chr16:69740899-69760854:-,TIMP2->Oncogene{Bushman},TIMP_metallopeptidase_inhibitor_2,chr17:76849059-76921469:-	KYSE520_OESOPHAGUS	0	0	0.0266	FALSE	0	0	0	1	0	FALSE	ACH-000637
KYSE520_OESOPHAGUS	WDR75--NABP1	1	1	WDR75	5663	chr2:190316621:+	NABP1	30131	chr2:192550325:+	ONLY_REF_SPLICE	YES	162	145	0.01	0.01	0.0133	0.0133	WDR75->WD_repeat_domain_75,chr2:190306159-190340291:+,NABP1->chr2:192542794-192561385:+,nucleic_acid_binding_protein_1	KYSE520_OESOPHAGUS	0.01	0.01	0.0266	FALSE	0	0	0	1	0	FALSE	ACH-000637
HS172T_FIBROBLAST	MT-ND6--MT-ND5	58	14	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	4280	1	0.02	0.9583	0.2313	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS172T_FIBROBLAST	0.02	1	1.1896	FALSE	101	855	57	72	0	FALSE	ACH-000088
HS172T_FIBROBLAST	TIMM23B--LINC00843	47	33	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.7765	0.5452	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS172T_FIBROBLAST	0.98	1	1.3217	TRUE	508	994	45	981	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-TA--MT-TC	51	6	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8426	0.0991	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS172T_FIBROBLAST	1	1	0.9417	FALSE	462	80	0	856	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-TE	28	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	6	0	0.85	1	0.4626	0.1157	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS172T_FIBROBLAST	0.85	1	0.5783	FALSE	499	1288	110	792	0	FALSE	ACH-000088
HS172T_FIBROBLAST	TIMM23--RP11-464F9.1	27	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	217	6	0.12	0.83	0.4461	0.0496	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS172T_FIBROBLAST	0.12	0.83	0.4957	TRUE	519	3926	326	965	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-TE	26	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4296	0.0165	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS172T_FIBROBLAST	1	1	0.4461	FALSE	499	1288	110	792	0	FALSE	ACH-000088
HS172T_FIBROBLAST	PLXDC1--TAF13	26	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4296	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS172T_FIBROBLAST	1	1	0.4296	TRUE	7	10	0	216	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-CO1--MT-TS1	24	0	MT-CO1	2512	chrM:7415:+	MT-TS1	5592	chrM:7465:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3965	0	LOCAL_INVERSION:+:-:[1],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-TS1->chrM:7446-7514:-,mitochondrially_encoded_tRNA_serine_1_(UCN)	HS172T_FIBROBLAST	1	1	0.3965	FALSE	5	22	0	2	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-ND5	20	1	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	3165	2251	0.01	0.01	0.3304	0.0165	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS172T_FIBROBLAST	0.01	0.01	0.3469	FALSE	101	855	57	72	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-ND5	16	14	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	YES	0	4080	1	0.01	0.2644	0.2313	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS172T_FIBROBLAST	0.01	1	0.4957	FALSE	101	855	57	72	0	FALSE	ACH-000088
HS172T_FIBROBLAST	C15orf57--CBX3	13	20	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	51	14	0.39	0.7	0.2148	0.3304	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS172T_FIBROBLAST	0.39	0.7	0.5452	TRUE	267	562	48	632	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-TA--MT-TC	16	7	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2644	0.1157	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS172T_FIBROBLAST	1	1	0.3801	FALSE	462	80	0	856	0	FALSE	ACH-000088
HS172T_FIBROBLAST	PRR16--CTD-2334D19.1	16	6	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	43	0	0.34	1	0.2644	0.0991	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS172T_FIBROBLAST	0.34	1	0.3635	FALSE	21	45	1	60	0	FALSE	ACH-000088
HS172T_FIBROBLAST	C15orf57--CBX3	11	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	51	14	0.28	0.59	0.1817	0.1487	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS172T_FIBROBLAST	0.28	0.59	0.3304	TRUE	267	562	48	632	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-ND5	10	13	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	2265	1	0.01	0.1652	0.2148	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS172T_FIBROBLAST	0.01	1	0.38	FALSE	101	855	57	72	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND4--MT-ATP8	13	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2148	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS172T_FIBROBLAST	1	1	0.2148	FALSE	230	193	14	283	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-TE	12	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1983	0.0165	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS172T_FIBROBLAST	1	1	0.2148	FALSE	499	1288	110	792	0	FALSE	ACH-000088
HS172T_FIBROBLAST	RP4-565E6.1--HYDIN	11	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1817	0.0496	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS172T_FIBROBLAST	1	1	0.2313	TRUE	456	1387	91	133	0	FALSE	ACH-000088
HS172T_FIBROBLAST	RP11-444D3.1--SOX5	10	6	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1652	0.0991	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS172T_FIBROBLAST	1	1	0.2643	TRUE	477	1352	189	275	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND5--MT-ND4	9	5	MT-ND5	2794	chrM:14130:+	MT-ND4	6566	chrM:11513:+	INCL_NON_REF_SPLICE	YES	0	6934	1	0	0.1487	0.0826	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HS172T_FIBROBLAST	0	1	0.2313	FALSE	47	27	1	24	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-TE	7	8	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	6	0	0.71	1	0.1157	0.1322	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS172T_FIBROBLAST	0.71	1	0.2479	FALSE	499	1288	110	792	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-ND5	6	9	MT-ND6	1462	chrM:14212:-	MT-ND5	6206	chrM:14017:+	INCL_NON_REF_SPLICE	YES	1	3662	0.94	0	0.0991	0.1487	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS172T_FIBROBLAST	0	0.94	0.2478	FALSE	101	855	57	72	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-ND5	6	9	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	1	704	0.94	0.02	0.0991	0.1487	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS172T_FIBROBLAST	0.02	0.94	0.2478	FALSE	101	855	57	72	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-TA--MT-TC	6	7	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0991	0.1157	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS172T_FIBROBLAST	1	1	0.2148	FALSE	462	80	0	856	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND4--MT-ATP8	7	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1157	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS172T_FIBROBLAST	1	1	0.1157	FALSE	230	198	14	283	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-ND5	3	14	MT-ND6	1593	chrM:14081:-	MT-ND5	6080	chrM:13891:+	INCL_NON_REF_SPLICE	YES	0	5135	1	0	0.0496	0.2313	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS172T_FIBROBLAST	0	1	0.2809	FALSE	101	855	57	72	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-TE	3	13	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.0496	0.2148	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS172T_FIBROBLAST	0.89	1	0.2644	FALSE	499	1288	110	792	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0991	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS172T_FIBROBLAST	1	1	0.0991	FALSE	462	80	0	856	0	FALSE	ACH-000088
HS172T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	5	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0826	0.0661	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS172T_FIBROBLAST	1	1	0.1487	FALSE	515	4851	409	746	0	FALSE	ACH-000088
HS172T_FIBROBLAST	XXbac-BPG252P9.9--TUBBP2	6	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0991	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	HS172T_FIBROBLAST	1	1	0.0991	TRUE	0	1	0	48	1	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-ND5	4	7	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	YES	2	2289	0.85	0	0.0661	0.1157	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS172T_FIBROBLAST	0	0.85	0.1818	FALSE	101	855	57	72	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-TE	4	7	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.79	1	0.0661	0.1157	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS172T_FIBROBLAST	0.79	1	0.1818	FALSE	499	1288	110	792	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-ND5	3	9	MT-ND6	1463	chrM:14211:-	MT-ND5	6283	chrM:14094:+	INCL_NON_REF_SPLICE	YES	1	2130	0.92	0.01	0.0496	0.1487	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS172T_FIBROBLAST	0.01	0.92	0.1983	FALSE	101	855	57	72	0	FALSE	ACH-000088
HS172T_FIBROBLAST	RP11-141M1.3--STARD13	4	5	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	36	0.82	0.2	0.0661	0.0826	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HS172T_FIBROBLAST	0.2	0.82	0.1487	FALSE	141	264	50	91	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-TE	5	0	MT-ND6	1031	chrM:14643:-	MT-TE	4590	chrM:14678:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0826	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS172T_FIBROBLAST	1	1	0.0826	FALSE	499	1288	110	792	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-TE	3	7	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	6	0	0.62	1	0.0496	0.1157	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS172T_FIBROBLAST	0.62	1	0.1653	FALSE	499	1288	110	792	0	FALSE	ACH-000088
HS172T_FIBROBLAST	RP11-141M1.3--STARD13	3	6	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	3	36	0.75	0.2	0.0496	0.0991	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	HS172T_FIBROBLAST	0.2	0.75	0.1487	FALSE	49	120	16	70	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-TE	3	5	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0.0826	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS172T_FIBROBLAST	1	1	0.1322	FALSE	499	1288	110	792	0	FALSE	ACH-000088
HS172T_FIBROBLAST	PRR16--CTD-2334D19.1	3	5	PRR16	8644	chr5:120022405:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	54	0	0.13	1	0.0496	0.0826	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS172T_FIBROBLAST	0.13	1	0.1322	FALSE	21	45	1	60	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-CO1--MT-TS1	4	0	MT-CO1	2271	chrM:7174:+	MT-TS1	5597	chrM:7460:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0	LOCAL_INVERSION:+:-:[1],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-TS1->chrM:7446-7514:-,mitochondrially_encoded_tRNA_serine_1_(UCN)	HS172T_FIBROBLAST	1	1	0.0661	FALSE	5	22	0	2	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS172T_FIBROBLAST	1	1	0.0661	FALSE	230	193	14	283	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS172T_FIBROBLAST	1	1	0.0661	FALSE	499	1288	110	792	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-TE	4	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0661	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS172T_FIBROBLAST	1	1	0.0661	FALSE	499	1288	110	792	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-TE	3	3	MT-ND6	1273	chrM:14401:-	MT-TE	4574	chrM:14694:-	INCL_NON_REF_SPLICE	YES	6	0	0.5	1	0.0496	0.0496	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS172T_FIBROBLAST	0.5	1	0.0992	FALSE	499	1288	110	792	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-CO1--MT-TS1	3	2	MT-CO1	2544	chrM:7447:+	MT-TS1	5544	chrM:7513:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0.033	LOCAL_INVERSION:+:-:[1],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-TS1->chrM:7446-7514:-,mitochondrially_encoded_tRNA_serine_1_(UCN)	HS172T_FIBROBLAST	1	1	0.0826	FALSE	5	22	0	2	0	FALSE	ACH-000088
HS172T_FIBROBLAST	RP11-444D3.1--SOX5	2	6	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0.0991	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS172T_FIBROBLAST	1	1	0.1321	TRUE	274	363	69	150	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND4--MT-ATP8	3	1	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10058	5	0	0.44	0.0496	0.0165	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HS172T_FIBROBLAST	0	0.44	0.0661	FALSE	231	217	16	283	0	FALSE	ACH-000088
HS172T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0.0826	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS172T_FIBROBLAST	1	1	0.1156	FALSE	467	2173	244	435	0	FALSE	ACH-000088
HS172T_FIBROBLAST	CTD-2337A12.1--CAST	3	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0496	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS172T_FIBROBLAST	1	1	0.0496	TRUE	347	1186	183	220	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS172T_FIBROBLAST	1	1	0.0496	FALSE	499	1288	110	792	0	FALSE	ACH-000088
HS172T_FIBROBLAST	RP11-444D3.1--SOX5	1	8	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0165	0.1322	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS172T_FIBROBLAST	1	1	0.1487	TRUE	160	277	29	98	0	FALSE	ACH-000088
HS172T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0165	0.0826	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS172T_FIBROBLAST	1	1	0.0991	FALSE	407	2205	196	549	0	FALSE	ACH-000088
HS172T_FIBROBLAST	CHPT1--EEA1	2	0	CHPT1	5260	chr12:102110590:+	EEA1	42600	chr12:93202932:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	CHPT1->choline_phosphotransferase_1,chr12:102090725-102137918:+,EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1	HS172T_FIBROBLAST	1	1	0.033	TRUE	0	0	0	1	0	TRUE	ACH-000088
HS172T_FIBROBLAST	MATR3--CTNNA1	2	0	MATR3	9772	chr5:138629494:+	CTNNA1	45982	chr5:138145727:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:2=pct:0.5],Esophagus=[count:2=pct:0.5],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Artery_-_Aorta=2,Brain_-_Hippocampus=1,Uterus=1,Esophagus_-_Mucosa=1,Colon_-_Sigmoid=1},MATR3->chr5:138609441-138667360:+,matrin_3,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	HS172T_FIBROBLAST	1	1	0.033	TRUE	3	14	0	14	0	FALSE	ACH-000088
HS172T_FIBROBLAST	ZEB1--B2M	2	0	ZEB1	1798	chr10:31608221:+	B2M	31515	chr15:45007621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Blood=[count:1=pct:0.6]},GTEx_v2:{count=3;pct=0.03%;dist=Whole_Blood=3},ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+	HS172T_FIBROBLAST	1	1	0.033	TRUE	2	0	0	1	0	FALSE	ACH-000088
HS172T_FIBROBLAST	MANBA--UBE2D3	1	2	MANBA	1277	chr4:103681875:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	NO	299	556	0.01	0.01	0.0165	0.033	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	HS172T_FIBROBLAST	0.01	0.01	0.0495	FALSE	12	9	1	12	0	FALSE	ACH-000088
HS172T_FIBROBLAST	PRR16--CTD-2334D19.1	1	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	22	0	0.08	1	0.0165	0.0165	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS172T_FIBROBLAST	0.08	1	0.033	FALSE	56	216	12	147	0	FALSE	ACH-000088
HS172T_FIBROBLAST	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0165	0.0165	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HS172T_FIBROBLAST	1	1	0.033	FALSE	416	2512	207	587	0	FALSE	ACH-000088
HS172T_FIBROBLAST	RP11-155G15.2--RP11-1E3.1	1	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0165	0.0165	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HS172T_FIBROBLAST	1	1	0.033	FALSE	46	201	11	112	0	FALSE	ACH-000088
HS172T_FIBROBLAST	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0165	0.0165	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS172T_FIBROBLAST	1	1	0.033	TRUE	458	1351	185	561	0	FALSE	ACH-000088
HS172T_FIBROBLAST	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0165	0.0165	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS172T_FIBROBLAST	0.5	1	0.033	TRUE	465	1949	224	605	0	FALSE	ACH-000088
HS172T_FIBROBLAST	RP4-565E6.1--HYDIN	1	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	3	1	0.4	0.0165	0.0165	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS172T_FIBROBLAST	0.4	1	0.033	TRUE	84	87	4	41	0	FALSE	ACH-000088
HCC827_LUNG	RASSF3--FRG1B	1059	86	RASSF3	1231	chr12:65004523:+	FRG1B	15672	chr20:29623129:+	ONLY_REF_SPLICE	YES	5	46	1	0.96	10.4306	0.8471	RASSF3->Ras_association_domain_family_member_3,chr12:65004293-65091347:+,FRG1B->chr20:29611857-29634010:+	HCC827_LUNG	0.96	1	11.2777	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	KIAA1429--RP11-586K2.1	210	68	KIAA1429	2261	chr8:95556055:-	RP11-586K2.1	37940	chr8:89712521:+	ONLY_REF_SPLICE	YES	40	0	0.87	1	2.0684	0.6698	KIAA1429->KIAA1429,chr8:95499921-95565757:-,RP11-586K2.1->chr8:89339065-89749363:+	HCC827_LUNG	0.87	1	2.7382	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	TBK1--RP11-338E21.1	150	29	TBK1	6330	chr12:64860862:+	RP11-338E21.1	24507	chr12:64992996:-	ONLY_REF_SPLICE	YES	448	0	0.29	1	1.4774	0.2856	LOCAL_INVERSION:+:-:[96970],TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,RP11-338E21.1->chr12:64992858-65003239:-	HCC827_LUNG	0.29	1	1.763	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	TIMM23B--LINC00843	66	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.6501	0.1083	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC827_LUNG	0.99	1	0.7584	TRUE	508	994	45	981	0	FALSE	ACH-000012
HCC827_LUNG	ST3GAL1--RP11-103H7.2	44	13	ST3GAL1	12845	chr8:134487962:-	RP11-103H7.2	27477	chr8:127512122:+	ONLY_REF_SPLICE	YES	6	0	0.9	1	0.4334	0.128	ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-,RP11-103H7.2->chr8:127510394-127512548:+	HCC827_LUNG	0.9	1	0.5614	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	JPH1--NCOA2	40	11	JPH1	3180	chr8:75227096:-	NCOA2	15431	chr8:71209035:-	ONLY_REF_SPLICE	YES	106	4	0.32	0.93	0.394	0.1083	JPH1->chr8:75146935-75233563:-,junctophilin_1,NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2	HCC827_LUNG	0.32	0.93	0.5023	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	MT-TA--MT-TC	41	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4038	0.0394	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC827_LUNG	1	1	0.4432	FALSE	462	80	0	856	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND6--MT-TE	35	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3447	0.0492	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC827_LUNG	1	1	0.3939	FALSE	499	1288	110	792	0	FALSE	ACH-000012
HCC827_LUNG	TIMM23--RP11-464F9.1	31	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	188	4	0.15	0.89	0.3053	0.0098	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC827_LUNG	0.15	0.89	0.3151	TRUE	519	3926	326	965	0	FALSE	ACH-000012
HCC827_LUNG	TBK1--RP11-338E21.1	21	33	TBK1	6330	chr12:64860862:+	RP11-338E21.1	24489	chr12:64993014:-	INCL_NON_REF_SPLICE	YES	448	0	0.11	1	0.2068	0.325	LOCAL_INVERSION:+:-:[96970],TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,RP11-338E21.1->chr12:64992858-65003239:-	HCC827_LUNG	0.11	1	0.5318	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	RPL7--CASC8	24	14	RPL7	3775	chr8:74204924:-	CASC8	15033	chr8:128433208:-	ONLY_REF_SPLICE	YES	5006	0	0.01	1	0.2364	0.1379	RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC827_LUNG	0.01	1	0.3743	TRUE	0	0	0	2	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND6--MT-TE	26	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2561	0.0492	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC827_LUNG	1	1	0.3053	FALSE	499	1288	110	792	0	FALSE	ACH-000012
HCC827_LUNG	PLXDC1--TAF13	27	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2659	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCC827_LUNG	1	1	0.2659	TRUE	7	10	0	216	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND5--MT-ATP8	23	5	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3442	3	0.01	0.9	0.2265	0.0492	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827_LUNG	0.01	0.9	0.2757	FALSE	43	37	8	105	0	FALSE	ACH-000012
HCC827_LUNG	ZSWIM4--RFX1	16	9	ZSWIM4	6454	chr19:13923978:+	RFX1	24652	chr19:14094407:-	ONLY_REF_SPLICE	YES	8	10	0.76	0.71	0.1576	0.0886	{Klijn_CCL:Lung=1},ZSWIM4->chr19:13906274-13943044:+,zinc_finger_SWIM-type_containing_4,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	HCC827_LUNG	0.71	0.76	0.2462	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	TMEM9B--TMEM41B	17	3	TMEM9B	7711	chr11:8969849:-	TMEM41B	14298	chr11:9316934:-	INCL_NON_REF_SPLICE	YES	52	48	0.28	0.29	0.1674	0.0295	TMEM9B->TMEM9_domain_family_member_B,chr11:8968841-8986558:-,TMEM41B->chr11:9302201-9336327:-,transmembrane_protein_41B	HCC827_LUNG	0.28	0.29	0.1969	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	C15orf57--CBX3	14	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	22	33	0.56	0.46	0.1379	0.1379	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC827_LUNG	0.46	0.56	0.2758	TRUE	267	562	48	632	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-RNR2	15	6	MT-ATP6	1567	chrM:9093:+	MT-RNR2	4710	chrM:1699:+	INCL_NON_REF_SPLICE	YES	1692	0	0.01	1	0.1477	0.0591	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC827_LUNG	0.01	1	0.2068	FALSE	63	17	1	58	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND6--MT-TE	13	14	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.128	0.1379	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC827_LUNG	0.96	1	0.2659	FALSE	499	1288	110	792	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND5--MT-ATP8	13	10	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	5	0	0.82	1	0.128	0.0985	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827_LUNG	0.82	1	0.2265	FALSE	43	37	8	105	0	FALSE	ACH-000012
HCC827_LUNG	RP11-123O10.4--GRIP1	14	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1379	0.0295	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC827_LUNG	1	1	0.1674	FALSE	416	2512	207	587	0	FALSE	ACH-000012
HCC827_LUNG	ICAM5--ANO8	12	5	ICAM5	3886	chr19:10403542:+	ANO8	11828	chr19:17444609:-	ONLY_REF_SPLICE	YES	12	8	0.59	0.68	0.1182	0.0492	{Klijn_CCL:Lung=1},ICAM5->Oncogene{Bushman},chr19:10400657-10407454:+,intercellular_adhesion_molecule_5,ANO8->anoctamin_8,chr19:17434032-17445638:-	HCC827_LUNG	0.59	0.68	0.1674	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	NPM1P24--SET	13	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.128	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCC827_LUNG	1	1	0.128	TRUE	0	0	0	434	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-CO1	12	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	8504	20433	0	0	0.1182	0.0197	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827_LUNG	0	0	0.1379	FALSE	183	104	9	328	0	FALSE	ACH-000012
HCC827_LUNG	TPD52--PCAT1	12	2	TPD52	6214	chr8:81083660:-	PCAT1	30419	chr8:127889917:+	ONLY_REF_SPLICE	YES	456	0	0.03	1	0.1182	0.0197	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding)	HCC827_LUNG	0.03	1	0.1379	TRUE	0	0	0	2	0	FALSE	ACH-000012
HCC827_LUNG	SGK3--COPS5	11	4	SGK3	3963	chr8:67687554:+	COPS5	35899	chr8:67971680:-	ONLY_REF_SPLICE	YES	4	648	0.79	0.02	0.1083	0.0394	SGK3->chr8:67624653-67774257:+,serum/glucocorticoid_regulated_kinase_family_member_3,COPS5->COP9_signalosome_subunit_5,chr8:67955314-67996018:-	HCC827_LUNG	0.02	0.79	0.1477	TRUE	0	0	0	2	0	FALSE	ACH-000012
HCC827_LUNG	ARFGEF1--SGK3	11	3	ARFGEF1	22076	chr8:68150578:-	SGK3	53454	chr8:67705851:+	ONLY_REF_SPLICE	YES	72	5	0.16	0.74	0.1083	0.0295	ARFGEF1->ADP_ribosylation_factor_guanine_nucleotide_exchange_factor_1,chr8:68085747-68255912:-,SGK3->chr8:67624653-67774257:+,serum/glucocorticoid_regulated_kinase_family_member_3	HCC827_LUNG	0.16	0.74	0.1378	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	FGFR2--COL14A1	10	7	FGFR2	29001	chr10:123243212:-	COL14A1	77744	chr8:121301847:+	ONLY_REF_SPLICE	YES	6	1	0.74	0.94	0.0985	0.0689	{Klijn_CCL:Colo-Rectal=1,Lung=1},FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,COL14A1->chr8:121072019-121384275:+,collagen_type_XIV_alpha_1	HCC827_LUNG	0.74	0.94	0.1674	TRUE	0	0	0	32	0	FALSE	ACH-000012
HCC827_LUNG	MT-TA--MT-TC	8	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0788	0.0591	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC827_LUNG	1	1	0.1379	FALSE	462	80	0	856	0	FALSE	ACH-000012
HCC827_LUNG	KIAA1429--RP11-586K2.1	4	21	KIAA1429	2261	chr8:95556055:-	RP11-586K2.1	38998	chr8:89721559:+	ONLY_REF_SPLICE	YES	40	0	0.38	1	0.0394	0.2068	KIAA1429->KIAA1429,chr8:95499921-95565757:-,RP11-586K2.1->chr8:89339065-89749363:+	HCC827_LUNG	0.38	1	0.2462	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	MT-ND6--MT-TE	3	24	MT-ND6	1136	chrM:14538:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0.2364	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC827_LUNG	1	1	0.2659	FALSE	499	1288	110	792	0	FALSE	ACH-000012
HCC827_LUNG	PFN1--CTD-2192J16.15	9	0	PFN1	1760	chr17:4851597:-	CTD-2192J16.15	7412	chr19:12754732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0886	0	PFN1->Oncogene{Bushman},chr17:4848947-4852356:-,profilin_1,CTD-2192J16.15->chr19:12754089-12754733:-	HCC827_LUNG	1	1	0.0886	TRUE	0	0	0	1	0	TRUE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-CO1	8	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8628	20886	0	0	0.0788	0.0197	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827_LUNG	0	0	0.0985	FALSE	183	104	9	328	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-RNR2	8	2	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	9655	8850	0	0	0.0788	0.0197	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC827_LUNG	0	0	0.0985	FALSE	63	17	1	58	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-CO1	8	1	MT-ATP6	1526	chrM:9052:+	MT-CO1	5886	chrM:7108:+	INCL_NON_REF_SPLICE	YES	4539	18776	0	0	0.0788	0.0098	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827_LUNG	0	0	0.0886	FALSE	183	104	9	328	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND6--MT-TE	6	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0.0886	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC827_LUNG	1	1	0.1477	FALSE	499	1288	110	792	0	FALSE	ACH-000012
HCC827_LUNG	PKM--RPL5	8	1	PKM	19662	chr15:72491968:-	RPL5	23274	chr1:93297595:+	INCL_NON_REF_SPLICE	YES	1906	0	0	1	0.0788	0.0098	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	HCC827_LUNG	0	1	0.0886	FALSE	0	0	0	1	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND6--MT-TE	3	20	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0295	0.197	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC827_LUNG	0.96	1	0.2265	FALSE	499	1288	110	792	0	FALSE	ACH-000012
HCC827_LUNG	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0788	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC827_LUNG	1	1	0.0788	FALSE	462	80	0	856	0	FALSE	ACH-000012
HCC827_LUNG	C15orf57--CBX3	5	11	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	22	34	0.42	0.32	0.0492	0.1083	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC827_LUNG	0.32	0.42	0.1575	TRUE	267	562	48	632	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-CO1	7	3	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	10525	20779	0	0	0.0689	0.0295	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827_LUNG	0	0	0.0984	FALSE	183	104	9	328	0	FALSE	ACH-000012
HCC827_LUNG	MT-TA--MT-TC	6	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0.0591	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC827_LUNG	1	1	0.1182	FALSE	462	80	0	856	0	FALSE	ACH-000012
HCC827_LUNG	RBM39--SPAG4	6	6	RBM39	17218	chr20:34300941:-	SPAG4	27634	chr20:34203991:+	INCL_NON_REF_SPLICE	YES	377	5	0.03	0.71	0.0591	0.0591	LOCAL_INVERSION:-:+:[82560],RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-,SPAG4->chr20:34203814-34208971:+,sperm_associated_antigen_4	HCC827_LUNG	0.03	0.71	0.1182	TRUE	0	0	0	1	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-CO1	7	1	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	7983	18945	0	0	0.0689	0.0098	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827_LUNG	0	0	0.0787	FALSE	183	104	9	328	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-RNR2	7	1	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	9639	8846	0	0	0.0689	0.0098	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC827_LUNG	0	0	0.0787	FALSE	63	17	1	58	0	FALSE	ACH-000012
HCC827_LUNG	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HCC827_LUNG	1	1	0.0689	TRUE	1	39	0	134	39	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-RNR2	7	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0689	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC827_LUNG	1	1	0.0689	FALSE	63	17	1	58	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND5--MT-ATP8	4	12	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	3	0	0.84	1	0.0394	0.1182	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827_LUNG	0.84	1	0.1576	FALSE	43	37	8	105	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-CO1	6	3	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	10431	18956	0	0	0.0591	0.0295	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827_LUNG	0	0	0.0886	FALSE	183	104	9	328	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND6--MT-TE	3	14	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0.1379	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC827_LUNG	1	1	0.1674	FALSE	499	1288	110	792	0	FALSE	ACH-000012
HCC827_LUNG	RPL7--CASC8	3	14	RPL7	3775	chr8:74204924:-	CASC8	13251	chr8:128455965:-	ONLY_REF_SPLICE	YES	5006	1	0	0.94	0.0295	0.1379	RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC827_LUNG	0	0.94	0.1674	TRUE	0	0	0	2	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND5--MT-ATP8	3	12	MT-ND5	2792	chrM:14128:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0.1182	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827_LUNG	1	1	0.1477	FALSE	43	37	8	105	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND5--MT-ATP8	3	12	MT-ND5	2795	chrM:14131:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0.1182	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827_LUNG	1	1	0.1477	FALSE	43	37	8	105	0	FALSE	ACH-000012
HCC827_LUNG	KIAA1429--RP11-586K2.1	4	7	KIAA1429	2261	chr8:95556055:-	RP11-586K2.1	40396	chr8:89747954:+	ONLY_REF_SPLICE	YES	40	0	0.22	1	0.0394	0.0689	KIAA1429->KIAA1429,chr8:95499921-95565757:-,RP11-586K2.1->chr8:89339065-89749363:+	HCC827_LUNG	0.22	1	0.1083	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	FLNC--MT-ATP6	5	2	FLNC	20524	chr7:128494094:+	MT-ATP6	28956	chrM:8927:+	INCL_NON_REF_SPLICE	YES	1011	10346	0.01	0	0.0492	0.0197	FLNC->chr7:128470431-128499328:+,filamin_C,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC827_LUNG	0	0.01	0.0689	FALSE	2	0	0	1	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-RNR2	5	2	MT-ATP6	1555	chrM:9081:+	MT-RNR2	5408	chrM:2397:+	INCL_NON_REF_SPLICE	YES	2995	10761	0	0	0.0492	0.0197	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC827_LUNG	0	0	0.0689	FALSE	63	17	1	58	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-RNR2	5	2	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	10072	8934	0	0	0.0492	0.0197	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC827_LUNG	0	0	0.0689	FALSE	63	17	1	58	0	FALSE	ACH-000012
HCC827_LUNG	NRIP1--AF127936.7	5	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.58	1	0.0492	0.0197	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC827_LUNG	0.58	1	0.0689	FALSE	292	1546	117	613	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-CO1	4	5	MT-ATP6	1295	chrM:8821:+	MT-CO1	5307	chrM:6529:+	INCL_NON_REF_SPLICE	NO	14180	18853	0	0	0.0394	0.0492	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827_LUNG	0	0	0.0886	FALSE	183	104	9	328	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-CO1	4	5	MT-ATP6	1444	chrM:8970:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	9040	18505	0	0	0.0394	0.0492	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827_LUNG	0	0	0.0886	FALSE	183	104	9	328	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1132	chrM:8658:+	MT-RNR2	4742	chrM:1731:+	INCL_NON_REF_SPLICE	YES	8776	0	0	1	0.0492	0.0098	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC827_LUNG	0	1	0.059	FALSE	63	17	1	58	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-RNR2	4	5	MT-ATP6	1516	chrM:9042:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	NO	5026	8763	0	0	0.0394	0.0492	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC827_LUNG	0	0	0.0886	FALSE	63	17	1	58	0	FALSE	ACH-000012
HCC827_LUNG	SGK3--COPS5	5	1	SGK3	1416	chr8:67625068:+	COPS5	35899	chr8:67971680:-	ONLY_REF_SPLICE	YES	3	648	0.67	0.01	0.0492	0.0098	SGK3->chr8:67624653-67774257:+,serum/glucocorticoid_regulated_kinase_family_member_3,COPS5->COP9_signalosome_subunit_5,chr8:67955314-67996018:-	HCC827_LUNG	0.01	0.67	0.059	FALSE	0	0	0	2	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-CO1	4	4	MT-ATP6	1447	chrM:8973:+	MT-CO1	5363	chrM:6585:+	INCL_NON_REF_SPLICE	YES	8971	21328	0	0	0.0394	0.0394	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827_LUNG	0	0	0.0788	FALSE	183	104	9	328	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-CO1	4	4	MT-ATP6	1400	chrM:8926:+	MT-CO1	5381	chrM:6603:+	INCL_NON_REF_SPLICE	YES	10507	20480	0	0	0.0394	0.0394	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827_LUNG	0	0	0.0788	FALSE	183	104	9	328	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-RNR2	4	4	MT-ATP6	1200	chrM:8726:+	MT-RNR2	4701	chrM:1690:+	INCL_NON_REF_SPLICE	YES	12449	0	0	1	0.0394	0.0394	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC827_LUNG	0	1	0.0788	FALSE	63	17	1	58	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND5--MT-ATP8	3	8	MT-ND5	2583	chrM:13919:+	MT-ATP8	5869	chrM:8422:+	INCL_NON_REF_SPLICE	YES	2652	0	0	1	0.0295	0.0788	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827_LUNG	0	1	0.1083	FALSE	43	37	8	105	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND5--MT-ATP8	4	4	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	NO	5270	72	0	0.1	0.0394	0.0394	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827_LUNG	0	0.1	0.0788	FALSE	43	37	8	105	0	FALSE	ACH-000012
HCC827_LUNG	WTAPP1--RUVBL1	5	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0492	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	HCC827_LUNG	1	1	0.0492	TRUE	9	252	6	66	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND5--MT-ATP8	3	7	MT-ND5	2592	chrM:13928:+	MT-ATP8	5878	chrM:8431:+	INCL_NON_REF_SPLICE	YES	2533	0	0	1	0.0295	0.0689	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827_LUNG	0	1	0.0984	FALSE	43	37	8	105	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND5--MT-ATP8	3	6	MT-ND5	2167	chrM:13503:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	4091	0	0	1	0.0295	0.0591	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827_LUNG	0	1	0.0886	FALSE	43	37	8	105	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND5--MT-ATP8	3	6	MT-ND5	2339	chrM:13675:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	2851	0	0	1	0.0295	0.0591	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827_LUNG	0	1	0.0886	FALSE	43	37	8	105	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND5--MT-ATP8	3	6	MT-ND5	2777	chrM:14113:+	MT-ATP8	5920	chrM:8473:+	INCL_NON_REF_SPLICE	YES	0	65	1	0.12	0.0295	0.0591	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827_LUNG	0.12	1	0.0886	FALSE	43	37	8	105	0	FALSE	ACH-000012
HCC827_LUNG	KRT7--MT-ND4L	4	1	KRT7	5533	chr12:52632512:+	MT-ND4L	17380	chrM:10470:+	INCL_NON_REF_SPLICE	YES	8616	0	0	1	0.0394	0.0098	KRT7->chr12:52626304-52645970:+,keratin_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC827_LUNG	0	1	0.0492	FALSE	0	0	0	2	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-CO1	3	5	MT-ATP6	1558	chrM:9084:+	MT-CO1	5226	chrM:6448:+	INCL_NON_REF_SPLICE	YES	2498	19064	0	0	0.0295	0.0492	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827_LUNG	0	0	0.0787	FALSE	183	104	9	328	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-RNR2	3	5	MT-ATP6	1530	chrM:9056:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	4315	9249	0	0	0.0295	0.0492	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC827_LUNG	0	0	0.0787	FALSE	63	17	1	58	0	FALSE	ACH-000012
HCC827_LUNG	RP11-114H23.1--RP11-114H23.2	4	1	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0394	0.0098	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC827_LUNG	1	1	0.0492	FALSE	81	155	12	160	0	FALSE	ACH-000012
HCC827_LUNG	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	37	1	0.12	0.0394	0.0098	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC827_LUNG	0.12	1	0.0492	TRUE	465	1949	224	605	0	FALSE	ACH-000012
HCC827_LUNG	FLNC--MT-ATP6	4	0	FLNC	11593	chr7:128485163:+	MT-ATP6	28956	chrM:8927:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	FLNC->chr7:128470431-128499328:+,filamin_C,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC827_LUNG	1	1	0.0394	FALSE	0	0	0	1	0	FALSE	ACH-000012
HCC827_LUNG	KB-1047C11.2--SULF1	4	0	KB-1047C11.2	2912	chr8:96281118:+	SULF1	38101	chr8:70539445:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0394	0	KB-1047C11.2->chr8:96216684-96822364:+,SULF1->chr8:70378859-70573150:+,sulfatase_1	HCC827_LUNG	1	1	0.0394	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC827_LUNG	1	1	0.0394	FALSE	63	17	1	58	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND5--MT-ATP8	3	4	MT-ND5	1628	chrM:12964:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	4172	0	0	1	0.0295	0.0394	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827_LUNG	0	1	0.0689	FALSE	42	36	7	104	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND5--MT-ATP8	3	4	MT-ND5	2297	chrM:13633:+	MT-ATP8	5933	chrM:8486:+	INCL_NON_REF_SPLICE	YES	2959	750	0	0.01	0.0295	0.0394	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827_LUNG	0	0.01	0.0689	FALSE	43	37	8	105	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND5--MT-ATP8	3	4	MT-ND5	1518	chrM:12854:+	MT-ATP8	5826	chrM:8379:+	INCL_NON_REF_SPLICE	YES	5052	0	0	1	0.0295	0.0394	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC827_LUNG	0	1	0.0689	FALSE	42	36	7	104	0	FALSE	ACH-000012
HCC827_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC827_LUNG	1	1	0.0394	FALSE	499	1288	110	792	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-CO1	3	3	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	9933	19040	0	0	0.0295	0.0295	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827_LUNG	0	0	0.059	FALSE	183	104	9	328	0	FALSE	ACH-000012
HCC827_LUNG	ZSWIM4--RFX1	3	3	ZSWIM4	5286	chr19:13920034:+	RFX1	24652	chr19:14094407:-	ONLY_REF_SPLICE	YES	22	10	0.21	0.38	0.0295	0.0295	{Klijn_CCL:Lung=1},ZSWIM4->chr19:13906274-13943044:+,zinc_finger_SWIM-type_containing_4,RFX1->chr19:14072350-14117851:-,regulatory_factor_X1	HCC827_LUNG	0.21	0.38	0.059	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	8507	18423	0	0	0.0295	0.0197	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCC827_LUNG	0	0	0.0492	FALSE	183	104	9	328	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1149	chrM:8675:+	MT-RNR2	4732	chrM:1721:+	INCL_NON_REF_SPLICE	YES	9933	0	0	1	0.0295	0.0197	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC827_LUNG	0	1	0.0492	FALSE	63	17	1	58	0	FALSE	ACH-000012
HCC827_LUNG	FTH1--ACTB	3	1	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	462	2	0.01	0.67	0.0295	0.0098	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	HCC827_LUNG	0.01	0.67	0.0393	FALSE	1	0	0	97	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1142	chrM:8668:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	NO	9393	8727	0	0	0.0295	0.0098	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC827_LUNG	0	0	0.0393	FALSE	63	17	1	58	0	FALSE	ACH-000012
HCC827_LUNG	RP11-386G11.10--MYH9	3	1	RP11-386G11.10	2083	chr12:49522647:+	MYH9	37271	chr22:36691103:-	INCL_NON_REF_SPLICE	YES	4	944	0.5	0	0.0295	0.0098	RP11-386G11.10->chr12:49521565-49541652:+,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	HCC827_LUNG	0	0.5	0.0393	FALSE	0	0	0	3	0	FALSE	ACH-000012
HCC827_LUNG	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0.0098	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC827_LUNG	1	1	0.0393	FALSE	407	2205	196	549	0	FALSE	ACH-000012
HCC827_LUNG	SLC7A5--ACTG1	3	1	SLC7A5	8068	chr16:87871474:-	ACTG1	21178	chr17:79478603:-	INCL_NON_REF_SPLICE	YES	1041	8859	0	0	0.0295	0.0098	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	HCC827_LUNG	0	0	0.0393	FALSE	0	0	0	11	0	FALSE	ACH-000012
HCC827_LUNG	JPH1--NCOA2	3	0	JPH1	1420	chr8:75233144:-	NCOA2	15431	chr8:71209035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	JPH1->chr8:75146935-75233563:-,junctophilin_1,NCOA2->Oncogene{Bushman},chr8:71021997-71316040:-,nuclear_receptor_coactivator_2	HCC827_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000012
HCC827_LUNG	KRT7--TUBA1C	3	0	KRT7	1809	chr12:52627112:+	TUBA1C	26832	chr12:49666110:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	KRT7->chr12:52626304-52645970:+,keratin_7,TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c	HCC827_LUNG	1	1	0.0295	TRUE	0	0	0	4	0	TRUE	ACH-000012
HCC827_LUNG	KRT7--TUBA1C	3	0	KRT7	6745	chr12:52635420:+	TUBA1C	27565	chr12:49666843:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	KRT7->chr12:52626304-52645970:+,keratin_7,TUBA1C->chr12:49582519-49667114:+,tubulin_alpha_1c	HCC827_LUNG	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC827_LUNG	1	1	0.0295	FALSE	63	17	1	58	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1126	chrM:8652:+	MT-RNR2	5289	chrM:2278:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC827_LUNG	1	1	0.0295	FALSE	63	17	1	58	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1111	chrM:8637:+	MT-RNR2	5402	chrM:2391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC827_LUNG	1	1	0.0295	FALSE	63	17	1	58	0	FALSE	ACH-000012
HCC827_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5408	chrM:2397:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC827_LUNG	1	1	0.0295	FALSE	63	17	1	58	0	FALSE	ACH-000012
HCC827_LUNG	RPL7--CASC8	2	4	RPL7	3775	chr8:74204924:-	CASC8	17308	chr8:128302305:-	ONLY_REF_SPLICE	YES	5006	3	0	0.67	0.0197	0.0394	RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7,CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCC827_LUNG	0	0.67	0.0591	FALSE	0	0	0	2	0	FALSE	ACH-000012
HCC827_LUNG	TATDN1--DEPTOR	3	0	TATDN1	8556	chr8:125527987:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	HCC827_LUNG	1	1	0.0295	TRUE	0	0	0	6	0	TRUE	ACH-000012
HCC827_LUNG	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	32	0	0.11	1	0.0197	0.0197	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC827_LUNG	0.11	1	0.0394	FALSE	164	806	69	479	0	FALSE	ACH-000012
HCC827_LUNG	NRIP1--AF127936.7	2	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	25	0	0.14	1	0.0197	0.0197	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC827_LUNG	0.14	1	0.0394	FALSE	125	705	46	456	0	FALSE	ACH-000012
HCC827_LUNG	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	5	5	0.38	0.38	0.0197	0.0098	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC827_LUNG	0.38	0.38	0.0295	FALSE	25	145	6	90	0	FALSE	ACH-000012
HCC827_LUNG	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0.0098	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC827_LUNG	1	1	0.0295	FALSE	515	4851	409	746	0	FALSE	ACH-000012
HCC827_LUNG	ZNF107--LNX1	2	1	ZNF107	7065	chr7:64152338:+	LNX1	17927	chr4:54540635:-	ONLY_REF_SPLICE	YES	16	0	0.16	1	0.0197	0.0098	ZNF107->chr7:64126511-64171404:+,zinc_finger_protein_107,LNX1->chr4:54325468-54567572:-,ligand_of_numb-protein_X_1	HCC827_LUNG	0.16	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000012
HCC827_LUNG	FCHO1--ABCA4	2	0	FCHO1	10532	chr19:17877619:+	ABCA4	56572	chr1:94505683:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	FCHO1->FCH_domain_only_1,chr19:17858527-17899377:+,ABCA4->ATP_binding_cassette_subfamily_A_member_4,chr1:94458393-94586688:-	HCC827_LUNG	1	1	0.0197	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	MSN--ACTN4	2	0	MSN	18292	chrX:64958479:+	ACTN4	33960	chr19:39205109:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	MSN->Oncogene{Bushman},chrX:64808257-64961791:+,moesin,ACTN4->actinin_alpha_4,chr19:39138289-39222223:+	HCC827_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000012
HCC827_LUNG	SGK3--COPS5	1	4	SGK3	3963	chr8:67687554:+	COPS5	30061	chr8:67981438:-	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0098	0.0394	SGK3->chr8:67624653-67774257:+,serum/glucocorticoid_regulated_kinase_family_member_3,COPS5->COP9_signalosome_subunit_5,chr8:67955314-67996018:-	HCC827_LUNG	0.56	1	0.0492	TRUE	0	0	0	1	0	TRUE	ACH-000012
HCC827_LUNG	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	26	1	0.1	0.0098	0.0197	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC827_LUNG	0.1	1	0.0295	TRUE	458	1351	185	561	0	FALSE	ACH-000012
HCC827_LUNG	BOP1--EEF1D	1	1	BOP1	4671	chr8:145500212:-	EEF1D	29535	chr8:144663498:-	ONLY_REF_SPLICE	YES	231	1219	0.01	0	0.0098	0.0098	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	HCC827_LUNG	0	0.01	0.0196	FALSE	0	0	0	4	0	FALSE	ACH-000012
HCC827_LUNG	KIAA1429--RP11-586K2.1	1	1	KIAA1429	1145	chr8:95565613:-	RP11-586K2.1	37940	chr8:89712521:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0098	0.0098	KIAA1429->KIAA1429,chr8:95499921-95565757:-,RP11-586K2.1->chr8:89339065-89749363:+	HCC827_LUNG	0.5	1	0.0196	TRUE	0	0	0	2	0	TRUE	ACH-000012
HCC827_LUNG	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	NO	32	5	0.06	0.29	0.0098	0.0098	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC827_LUNG	0.06	0.29	0.0196	FALSE	8	57	1	47	0	FALSE	ACH-000012
HCC827_LUNG	SGK3--COPS5	1	1	SGK3	1416	chr8:67625068:+	COPS5	33922	chr8:67973657:-	ONLY_REF_SPLICE	YES	3	707	0.4	0	0.0098	0.0098	SGK3->chr8:67624653-67774257:+,serum/glucocorticoid_regulated_kinase_family_member_3,COPS5->COP9_signalosome_subunit_5,chr8:67955314-67996018:-	HCC827_LUNG	0	0.4	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000012
HCC827_LUNG	TBK1--RP11-338E21.1	1	1	TBK1	2877	chr12:64849737:+	RP11-338E21.1	24507	chr12:64992996:-	ONLY_REF_SPLICE	YES	689	0	0	1	0.0098	0.0098	LOCAL_INVERSION:+:-:[96970],TBK1->TANK_binding_kinase_1,chr12:64845660-64895888:+,RP11-338E21.1->chr12:64992858-65003239:-	HCC827_LUNG	0	1	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000012
8305C_THYROID	TIMM23B--LINC00843	53	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.633	0.1314	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	8305C_THYROID	1	1	0.7644	TRUE	508	994	45	981	0	FALSE	ACH-001306
8305C_THYROID	TIMM23--RP11-464F9.1	31	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3702	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	8305C_THYROID	1	1	0.3702	TRUE	519	3926	326	965	0	FALSE	ACH-001306
8305C_THYROID	ACTN1--FTL	26	2	ACTN1	30946	chr14:69341503:-	FTL	34743	chr19:49468711:+	INCL_NON_REF_SPLICE	YES	1277	3394	0.02	0.01	0.3105	0.0239	ACTN1->actinin_alpha_1,chr14:69340860-69446157:-,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	8305C_THYROID	0.01	0.02	0.3344	TRUE	0	0	0	3	0	FALSE	ACH-001306
8305C_THYROID	MT-ND6--MT-TE	17	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.203	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	8305C_THYROID	1	1	0.203	FALSE	499	1288	110	792	0	FALSE	ACH-001306
8305C_THYROID	NRIP1--AF127936.7	16	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1911	0.0119	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	8305C_THYROID	1	1	0.203	FALSE	292	1546	117	613	0	FALSE	ACH-001306
8305C_THYROID	MYH9--MT2A	12	6	MYH9	40245	chr22:36678675:-	MT2A	44978	chr16:56642495:+	INCL_NON_REF_SPLICE	YES	2380	11	0.01	0.62	0.1433	0.0717	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	8305C_THYROID	0.01	0.62	0.215	TRUE	0	0	0	24	0	FALSE	ACH-001306
8305C_THYROID	SAMD5--SASH1	13	1	SAMD5	1461	chr6:147830523:+	SASH1	22535	chr6:148835460:+	ONLY_REF_SPLICE	YES	6	10	0.7	0.58	0.1553	0.0119	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	8305C_THYROID	0.58	0.7	0.1672	TRUE	0	0	0	2	0	TRUE	ACH-001306
8305C_THYROID	CUX1--GTF2I	11	6	CUX1	13547	chr7:101747739:+	GTF2I	73181	chr7:74143124:+	ONLY_REF_SPLICE	YES	75	113	0.18	0.13	0.1314	0.0717	CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1,GTF2I->chr7:74071994-74175026:+,general_transcription_factor_IIi	8305C_THYROID	0.13	0.18	0.2031	TRUE	0	0	0	1	0	TRUE	ACH-001306
8305C_THYROID	MT-ND6--MT-TE	9	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1075	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	8305C_THYROID	1	1	0.1075	FALSE	499	1288	110	792	0	FALSE	ACH-001306
8305C_THYROID	RP11-96H19.1--RP11-446N19.1	8	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.92	0.92	0.0955	0.0358	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	8305C_THYROID	0.92	0.92	0.1313	FALSE	515	4851	409	746	0	FALSE	ACH-001306
8305C_THYROID	JUN--MT2A	8	1	JUN	2308	chr1:59248478:-	MT2A	7705	chr16:56642494:+	INCL_NON_REF_SPLICE	YES	398	10	0.02	0.47	0.0955	0.0119	JUN->ArcherDX_panel,FoundationOne_panel,Jun_proto-oncogene,_AP-1_transcription_factor_subunit,Oncogene{Bushman},chr1:59246465-59249785:-,MT2A->chr16:56642111-56643409:+,metallothionein_2A	8305C_THYROID	0.02	0.47	0.1074	TRUE	0	0	0	6	0	FALSE	ACH-001306
8305C_THYROID	RP11-680G10.1--GSE1	7	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0836	0.0597	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	8305C_THYROID	1	1	0.1433	TRUE	458	1351	185	561	0	FALSE	ACH-001306
8305C_THYROID	MYH9--MT2A	6	8	MYH9	40281	chr22:36678639:-	MT2A	45018	chr16:56642535:+	INCL_NON_REF_SPLICE	YES	2403	7	0.01	0.67	0.0717	0.0955	MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle,MT2A->chr16:56642111-56643409:+,metallothionein_2A	8305C_THYROID	0.01	0.67	0.1672	TRUE	0	0	0	24	0	FALSE	ACH-001306
8305C_THYROID	RP11-120D5.1--MID1	7	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	18	1	0.36	0.0836	0.0358	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	8305C_THYROID	0.36	1	0.1194	FALSE	16	356	14	466	0	FALSE	ACH-001306
8305C_THYROID	RP11-680G10.1--GSE1	7	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	1	1	0.91	0.0836	0.0358	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	8305C_THYROID	0.91	1	0.1194	TRUE	465	1949	224	605	0	FALSE	ACH-001306
8305C_THYROID	MT-ND6--MT-TE	7	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0836	0.0239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	8305C_THYROID	0.9	1	0.1075	FALSE	499	1288	110	792	0	FALSE	ACH-001306
8305C_THYROID	NRIP1--AF127936.7	7	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.4	1	0.0836	0.0119	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	8305C_THYROID	0.4	1	0.0955	FALSE	125	705	46	456	0	FALSE	ACH-001306
8305C_THYROID	CTD-2337A12.1--CAST	6	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	65	1	0.11	0.0717	0.0239	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	8305C_THYROID	0.11	1	0.0956	TRUE	347	1186	183	220	0	FALSE	ACH-001306
8305C_THYROID	RNF152--RP11-879F14.1	5	5	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	11	1	0.48	0.91	0.0597	0.0597	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	8305C_THYROID	0.48	0.91	0.1194	FALSE	275	472	65	43	0	FALSE	ACH-001306
8305C_THYROID	COL8A1--CMSS1	4	7	COL8A1	14564	chr3:99513226:+	CMSS1	32892	chr3:99865817:+	INCL_NON_REF_SPLICE	YES	155	215	0.07	0.05	0.0478	0.0836	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	8305C_THYROID	0.05	0.07	0.1314	FALSE	76	19	3	26	0	FALSE	ACH-001306
8305C_THYROID	AP000525.9--LA16c-60G3.6	5	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0597	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	8305C_THYROID	1	1	0.0597	TRUE	0	42	0	133	42	FALSE	ACH-001306
8305C_THYROID	MT-ND6--MT-TE	4	1	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0478	0.0119	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	8305C_THYROID	1	1	0.0597	FALSE	499	1288	110	792	0	FALSE	ACH-001306
8305C_THYROID	VIM--ACTB	4	1	VIM	2136	chr10:17271393:+	ACTB	15629	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	1783	0	0	1	0.0478	0.0119	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	8305C_THYROID	0	1	0.0597	FALSE	0	0	0	9	0	FALSE	ACH-001306
8305C_THYROID	PRR16--CTD-2334D19.1	4	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0478	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	8305C_THYROID	1	1	0.0478	FALSE	56	216	12	147	0	FALSE	ACH-001306
8305C_THYROID	RP1-34H18.1--NAV3	4	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0478	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	8305C_THYROID	1	1	0.0478	TRUE	254	575	65	124	0	FALSE	ACH-001306
8305C_THYROID	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0358	0.0358	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	8305C_THYROID	0.86	1	0.0716	FALSE	407	2205	196	549	0	FALSE	ACH-001306
8305C_THYROID	MT-ND6--MT-TE	3	2	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0358	0.0239	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	8305C_THYROID	0.83	1	0.0597	FALSE	499	1288	110	792	0	FALSE	ACH-001306
8305C_THYROID	VIM--ACTB	3	2	VIM	2195	chr10:17271452:+	ACTB	15620	chr7:5570232:-	INCL_NON_REF_SPLICE	YES	8383	0	0	1	0.0358	0.0239	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	8305C_THYROID	0	1	0.0597	FALSE	0	0	0	9	0	FALSE	ACH-001306
8305C_THYROID	VIM-AS1--SERPINE1	3	1	VIM-AS1	1414	chr10:17271571:-	SERPINE1	13504	chr7:100775203:+	INCL_NON_REF_SPLICE	YES	9261	5499	0	0	0.0358	0.0119	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1	8305C_THYROID	0	0	0.0477	FALSE	0	0	0	1	0	FALSE	ACH-001306
8305C_THYROID	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0358	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	8305C_THYROID	1	1	0.0358	FALSE	499	1288	110	792	0	FALSE	ACH-001306
8305C_THYROID	COL8A1--CMSS1	1	6	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	NO	176	215	0.04	0.03	0.0119	0.0717	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	8305C_THYROID	0.03	0.04	0.0836	FALSE	38	10	2	29	0	FALSE	ACH-001306
8305C_THYROID	AHCY--RP11-317N12.1	2	1	AHCY	2446	chr20:32891049:-	RP11-317N12.1	22986	chr8:33895881:+	ONLY_REF_SPLICE	YES	54	8	0.05	0.27	0.0239	0.0119	AHCY->adenosylhomocysteinase,chr20:32868074-32899608:-,RP11-317N12.1->chr8:33462374-33896526:+	8305C_THYROID	0.05	0.27	0.0358	TRUE	0	0	0	1	0	TRUE	ACH-001306
8305C_THYROID	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	19	0	0.14	1	0.0239	0.0119	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	8305C_THYROID	0.14	1	0.0358	FALSE	164	806	69	479	0	FALSE	ACH-001306
8305C_THYROID	RNF152--RP11-879F14.1	1	5	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	NO	11	0	0.35	1	0.0119	0.0597	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	8305C_THYROID	0.35	1	0.0716	FALSE	119	124	24	18	0	FALSE	ACH-001306
8305C_THYROID	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0.0119	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	8305C_THYROID	1	1	0.0358	TRUE	477	1352	189	275	0	FALSE	ACH-001306
8305C_THYROID	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	8305C_THYROID	1	1	0.0239	TRUE	2	8	0	24	0	FALSE	ACH-001306
8305C_THYROID	NCK2--C2orf40	2	0	NCK2	5567	chr2:106471745:+	C2orf40	16942	chr2:106688300:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	NCK2->NCK_adaptor_protein_2,chr2:106361354-106510730:+,C2orf40->chr2:106679702-106694615:+,chromosome_2_open_reading_frame_40	8305C_THYROID	1	1	0.0239	TRUE	1	2	0	1	2	TRUE	ACH-001306
8305C_THYROID	NRIP1--AF127936.7	2	0	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	8305C_THYROID	1	1	0.0239	FALSE	8	57	1	47	0	FALSE	ACH-001306
8305C_THYROID	RNF122--PIGU	2	0	RNF122	1427	chr8:33424217:-	PIGU	17914	chr20:33176411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0239	0	RNF122->chr8:33405273-33424643:-,ring_finger_protein_122,PIGU->chr20:33148346-33264910:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_U	8305C_THYROID	1	1	0.0239	TRUE	0	0	0	1	0	TRUE	ACH-001306
8305C_THYROID	COL8A1--CMSS1	1	3	COL8A1	12080	chr3:99463865:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	NO	256	215	0.02	0.02	0.0119	0.0358	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	8305C_THYROID	0.02	0.02	0.0477	FALSE	4	4	0	17	0	FALSE	ACH-001306
8305C_THYROID	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.67	1	0.0119	0.0358	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	8305C_THYROID	0.67	1	0.0477	FALSE	192	492	57	212	0	FALSE	ACH-001306
8305C_THYROID	RP11-476K15.1--CTD-2015H3.2	1	2	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0119	0.0239	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	8305C_THYROID	1	1	0.0358	FALSE	0	46	0	73	0	FALSE	ACH-001306
8305C_THYROID	COL8A1--CMSS1	1	1	COL8A1	1190	chr3:99357508:+	CMSS1	31776	chr3:99860374:+	ONLY_REF_SPLICE	YES	24	224	0.08	0.01	0.0119	0.0119	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	8305C_THYROID	0.01	0.08	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-001306
8305C_THYROID	GGACT--PCCA	1	1	GGACT	3102	chr13:101236079:-	PCCA	40151	chr13:101179929:+	ONLY_REF_SPLICE	YES	44	30	0.04	0.06	0.0119	0.0119	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	8305C_THYROID	0.04	0.06	0.0238	TRUE	7	15	0	10	0	FALSE	ACH-001306
8305C_THYROID	PICALM--SYTL2	1	1	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	286	10	0.01	0.17	0.0119	0.0119	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	8305C_THYROID	0.01	0.17	0.0238	FALSE	4	2	0	20	0	FALSE	ACH-001306
8305C_THYROID	RP4-565E6.1--HYDIN	1	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0119	0.0119	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	8305C_THYROID	0.67	1	0.0238	TRUE	456	1387	91	133	0	FALSE	ACH-001306
8305C_THYROID	TDRP--ATP6V1C1	1	1	TDRP	2132	chr8:494650:-	ATP6V1C1	11755	chr8:104053026:+	ONLY_REF_SPLICE	YES	0	168	1	0.01	0.0119	0.0119	TDRP->chr8:439803-495781:-,testis_development_related_protein,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+	8305C_THYROID	0.01	1	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-001306
HCT15_LARGE_INTESTINE	TIMM23B--LINC00843	81	42	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.957	0.4962	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCT15_LARGE_INTESTINE	0.99	1	1.4532	TRUE	508	994	45	981	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	CCAT1--CASC8	60	59	CCAT1	1279	chr8:128231055:-	CASC8	15246	chr8:128302305:-	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.7089	0.6971	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	HCT15_LARGE_INTESTINE	0.99	1	1.406	TRUE	0	26	0	18	24	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	MGRN1--C16orf96	63	41	MGRN1	2342	chr16:4675049:+	C16orf96	30423	chr16:4621562:+	ONLY_REF_SPLICE	YES	64	0	0.62	1	0.7443	0.4844	LOCAL_REARRANGEMENT:+:[15779],MGRN1->chr16:4666494-4740975:+,mahogunin_ring_finger_1,C16orf96->chr16:4606491-4650715:+,chromosome_16_open_reading_frame_96	HCT15_LARGE_INTESTINE	0.62	1	1.2287	TRUE	0	1	0	1	1	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	GGA3--NUP85	59	35	GGA3	5372	chr17:73240700:-	NUP85	24993	chr17:73221198:+	ONLY_REF_SPLICE	YES	70	125	0.57	0.43	0.6971	0.4135	LOCAL_INVERSION:-:+:[841],GGA3->chr17:73232694-73258444:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_3,NUP85->chr17:73201754-73231853:+,nucleoporin_85	HCT15_LARGE_INTESTINE	0.43	0.57	1.1106	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	UBA2--GPI	54	42	UBA2	10047	chr19:34936026:+	GPI	34351	chr19:34884153:+	ONLY_REF_SPLICE	YES	838	1640	0.1	0.06	0.638	0.4962	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[26196],UBA2->chr19:34919257-34960853:+,ubiquitin_like_modifier_activating_enzyme_2,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	HCT15_LARGE_INTESTINE	0.06	0.1	1.1342	TRUE	0	0	0	1	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND6--MT-TE	62	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.7325	0.0118	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCT15_LARGE_INTESTINE	0.95	1	0.7443	FALSE	499	1288	110	792	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND6--MT-TE	62	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7325	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCT15_LARGE_INTESTINE	1	1	0.7325	FALSE	499	1288	110	792	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	NT5DC1--FRK	48	38	NT5DC1	6611	chr6:116439108:+	FRK	26838	chr6:116289902:-	ONLY_REF_SPLICE	YES	71	6	0.55	0.93	0.5671	0.449	{Klijn_CCL:Colo-Rectal=1},LOCAL_INVERSION:+:-:[40091],NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+,FRK->chr6:116252312-116381921:-,fyn_related_Src_family_tyrosine_kinase	HCT15_LARGE_INTESTINE	0.55	0.93	1.0161	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	ZNF654--HMGB2	55	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6498	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HCT15_LARGE_INTESTINE	1	1	0.6498	TRUE	0	0	0	518	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	FRK--NT5DC1	43	25	FRK	6190	chr6:116288714:-	NT5DC1	32385	chr6:116542217:+	ONLY_REF_SPLICE	YES	2	86	0.97	0.44	0.508	0.2954	{Klijn_CCL:Colo-Rectal=1},LOCAL_INVERSION:-:+:[40091],FRK->chr6:116252312-116381921:-,fyn_related_Src_family_tyrosine_kinase,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	HCT15_LARGE_INTESTINE	0.44	0.97	0.8034	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	TIMM23--RP11-464F9.1	47	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	548	7	0.09	0.88	0.5553	0.0709	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCT15_LARGE_INTESTINE	0.09	0.88	0.6262	TRUE	519	3926	326	965	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-TC--MT-TY	30	0	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3544	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCT15_LARGE_INTESTINE	1	1	0.3544	FALSE	51	280	19	36	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-TA--MT-TC	26	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3072	0.0118	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCT15_LARGE_INTESTINE	1	1	0.319	FALSE	462	80	0	856	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	PLXDC1--TAF13	23	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2717	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HCT15_LARGE_INTESTINE	1	1	0.2717	TRUE	7	10	0	216	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	PRMT3--RBM4B	16	26	PRMT3	2708	chr11:20411372:+	RBM4B	27502	chr11:66436762:-	ONLY_REF_SPLICE	YES	138	33	0.23	0.56	0.189	0.3072	PRMT3->chr11:20409076-20530840:+,protein_arginine_methyltransferase_3,RBM4B->RNA_binding_motif_protein_4B,chr11:66432469-66445392:-	HCT15_LARGE_INTESTINE	0.23	0.56	0.4962	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND6--MT-TE	21	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2481	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCT15_LARGE_INTESTINE	1	1	0.2481	FALSE	499	1288	110	792	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND4--MT-ND4L	20	2	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	68	0	0.24	1	0.2363	0.0236	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCT15_LARGE_INTESTINE	0.24	1	0.2599	FALSE	344	827	44	306	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND4--MT-ND4L	10	41	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	0	0.89	1	0.1181	0.4844	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCT15_LARGE_INTESTINE	0.89	1	0.6025	FALSE	344	821	44	306	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	PLAUR--LYPD5	18	8	PLAUR	10024	chr19:44156377:-	LYPD5	23011	chr19:44303986:-	ONLY_REF_SPLICE	YES	250	0	0.09	1	0.2127	0.0945	PLAUR->Oncogene{Bushman},chr19:44150247-44174699:-,plasminogen_activator,_urokinase_receptor,LYPD5->LY6/PLAUR_domain_containing_5,chr19:44300081-44331358:-	HCT15_LARGE_INTESTINE	0.09	1	0.3072	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	GGA3--NUP85	13	19	GGA3	4273	chr17:73242590:-	NUP85	24993	chr17:73221198:+	ONLY_REF_SPLICE	YES	58	125	0.36	0.2	0.1536	0.2245	LOCAL_INVERSION:-:+:[841],GGA3->chr17:73232694-73258444:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_3,NUP85->chr17:73201754-73231853:+,nucleoporin_85	HCT15_LARGE_INTESTINE	0.2	0.36	0.3781	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	MBTD1--UTP18	15	10	MBTD1	1329	chr17:49337196:-	UTP18	26407	chr17:49340635:+	ONLY_REF_SPLICE	YES	15	143	0.62	0.15	0.1772	0.1181	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},LOCAL_INVERSION:-:+:[365],MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1,UTP18->UTP18,_small_subunit_processome_component,chr17:49337889-49375297:+	HCT15_LARGE_INTESTINE	0.15	0.62	0.2953	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	NPM1P24--SET	17	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2008	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCT15_LARGE_INTESTINE	1	1	0.2008	TRUE	0	0	0	434	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	NT5DC3--RP11-642P15.1	13	13	NT5DC3	6455	chr12:104192365:-	RP11-642P15.1	35067	chr12:104300085:-	INCL_NON_REF_SPLICE	YES	30	2	0.46	0.93	0.1536	0.1536	LOCAL_REARRANGEMENT:-:[2552],NT5DC3->5'-nucleotidase_domain_containing_3,chr12:104164231-104234975:-,RP11-642P15.1->chr12:104237527-104323989:-	HCT15_LARGE_INTESTINE	0.46	0.93	0.3072	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	51	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	8	0	0.87	1	0.0354	0.6025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCT15_LARGE_INTESTINE	0.87	1	0.6379	FALSE	344	826	44	306	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND6--MT-TE	15	2	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.85	1	0.1772	0.0236	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCT15_LARGE_INTESTINE	0.85	1	0.2008	FALSE	499	1288	110	792	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	NCOA3--SPINT1	11	11	NCOA3	1163	chr20:46130763:+	SPINT1	30004	chr15:41136688:+	ONLY_REF_SPLICE	YES	10	97	0.69	0.18	0.13	0.13	NCOA3->Oncogene{Bushman},chr20:46130601-46285621:+,nuclear_receptor_coactivator_3,SPINT1->Oncogene{Bushman},chr15:41136216-41150405:+,serine_peptidase_inhibitor,_Kunitz_type_1	HCT15_LARGE_INTESTINE	0.18	0.69	0.26	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	MT-TA--MT-TC	13	0	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1536	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCT15_LARGE_INTESTINE	1	1	0.1536	FALSE	462	80	0	856	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	ZNF654--HMGB2	13	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1536	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HCT15_LARGE_INTESTINE	1	1	0.1536	TRUE	0	0	0	518	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-TA--MT-TC	12	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1418	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCT15_LARGE_INTESTINE	1	1	0.1418	FALSE	462	80	0	856	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	RP11-123O10.4--GRIP1	9	9	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1063	0.1063	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCT15_LARGE_INTESTINE	1	1	0.2126	FALSE	416	2512	207	587	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	C15orf57--CBX3	7	12	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	81	38	0.19	0.33	0.0827	0.1418	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCT15_LARGE_INTESTINE	0.19	0.33	0.2245	TRUE	267	562	48	632	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	FYN--KRT18P65	9	1	FYN	3621	chr6:112167792:-	KRT18P65	37428	chr6:112683202:-	INCL_NON_REF_SPLICE	YES	5	0	0.67	1	0.1063	0.0118	FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-,KRT18P65->chr6:112682639-112684039:-,keratin_18_pseudogene_65	HCT15_LARGE_INTESTINE	0.67	1	0.1181	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	MT-CO3--MT-ATP6	9	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1063	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT15_LARGE_INTESTINE	1	1	0.1063	FALSE	189	492	56	216	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-TC--MT-TY	9	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1063	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	HCT15_LARGE_INTESTINE	1	1	0.1063	FALSE	51	280	19	36	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	8	3	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.0945	0.0354	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCT15_LARGE_INTESTINE	0.79	1	0.1299	FALSE	81	155	12	160	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	NPM1P24--SET	8	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0945	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCT15_LARGE_INTESTINE	1	1	0.0945	TRUE	0	0	0	434	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	7	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	4	0	0.76	1	0.0709	0.0827	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCT15_LARGE_INTESTINE	0.76	1	0.1536	FALSE	344	821	44	306	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	FRK--NT5DC1	1	25	FRK	6190	chr6:116288714:-	NT5DC1	31327	chr6:116466601:+	ONLY_REF_SPLICE	YES	2	91	0.93	0.22	0.0118	0.2954	{Klijn_CCL:Colo-Rectal=1},LOCAL_INVERSION:-:+:[40091],FRK->chr6:116252312-116381921:-,fyn_related_Src_family_tyrosine_kinase,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	HCT15_LARGE_INTESTINE	0.22	0.93	0.3072	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	FYN--KRT18P65	7	0	FYN	1485	chr6:112194171:-	KRT18P65	37428	chr6:112683202:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0827	0	FYN->FYN_proto-oncogene,_Src_family_tyrosine_kinase,Oncogene{Bushman},chr6:111981535-112194655:-,KRT18P65->chr6:112682639-112684039:-,keratin_18_pseudogene_65	HCT15_LARGE_INTESTINE	1	1	0.0827	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND6--MT-TE	6	2	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.73	1	0.0709	0.0236	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCT15_LARGE_INTESTINE	0.73	1	0.0945	FALSE	499	1288	110	792	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	5	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	8	3	0.56	0.77	0.0591	0.0591	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT15_LARGE_INTESTINE	0.56	0.77	0.1182	FALSE	189	492	56	216	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	9	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	14841	0	0	1	0.0473	0.1063	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCT15_LARGE_INTESTINE	0	1	0.1536	FALSE	328	800	43	304	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0709	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HCT15_LARGE_INTESTINE	1	1	0.0709	FALSE	183	104	9	328	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0709	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCT15_LARGE_INTESTINE	1	1	0.0709	FALSE	344	821	44	306	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	3	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	8	3	0.5	0.73	0.0591	0.0354	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT15_LARGE_INTESTINE	0.5	0.73	0.0945	FALSE	189	492	56	216	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	GGA3--NUP85	1	17	GGA3	5372	chr17:73240700:-	NUP85	25232	chr17:73221437:+	ONLY_REF_SPLICE	NO	70	150	0.2	0.11	0.0118	0.2008	LOCAL_INVERSION:-:+:[841],GGA3->chr17:73232694-73258444:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_3,NUP85->chr17:73201754-73231853:+,nucleoporin_85	HCT15_LARGE_INTESTINE	0.11	0.2	0.2126	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	1	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	7	0	0.46	1	0.0591	0.0118	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT15_LARGE_INTESTINE	0.46	1	0.0709	FALSE	189	492	56	216	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	9	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	695	0	0.02	1	0.0354	0.1063	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCT15_LARGE_INTESTINE	0.02	1	0.1417	FALSE	344	827	44	306	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	PSME2--ADCY4	4	5	PSME2	3513	chr14:24614267:-	ADCY4	21005	chr14:24789094:-	ONLY_REF_SPLICE	YES	896	0	0.01	1	0.0473	0.0591	PSME2->chr14:24612574-24616779:-,proteasome_activator_subunit_2,ADCY4->adenylate_cyclase_4,chr14:24787555-24804299:-	HCT15_LARGE_INTESTINE	0.01	1	0.1064	TRUE	0	0	0	1	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4584	chrM:14684:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCT15_LARGE_INTESTINE	1	1	0.0591	FALSE	499	1288	110	792	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCT15_LARGE_INTESTINE	1	1	0.0591	FALSE	499	1288	110	792	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	3	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	32	0	0.18	1	0.0473	0.0354	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCT15_LARGE_INTESTINE	0.18	1	0.0827	FALSE	344	826	44	306	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0473	0.0354	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCT15_LARGE_INTESTINE	1	1	0.0827	FALSE	515	4851	409	746	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	2	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	22	0	0.21	1	0.0473	0.0236	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCT15_LARGE_INTESTINE	0.21	1	0.0709	FALSE	344	826	44	306	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	6	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	22	0	0.29	1	0.0354	0.0709	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCT15_LARGE_INTESTINE	0.29	1	0.1063	FALSE	344	826	44	306	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	5	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.47	0.0354	0.0591	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT15_LARGE_INTESTINE	0.47	1	0.0945	FALSE	189	492	56	216	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND6--MT-TE	4	1	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0473	0.0118	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCT15_LARGE_INTESTINE	0.62	1	0.0591	FALSE	499	1288	110	792	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND6--MT-TE	4	1	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	3	0	0.62	1	0.0473	0.0118	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCT15_LARGE_INTESTINE	0.62	1	0.0591	FALSE	499	1288	110	792	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	4	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.7	0.0354	0.0473	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT15_LARGE_INTESTINE	0.7	1	0.0827	FALSE	189	492	56	216	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCT15_LARGE_INTESTINE	1	1	0.0473	FALSE	344	821	44	306	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCT15_LARGE_INTESTINE	1	1	0.0473	FALSE	499	1288	110	792	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	3	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	63	0	0.09	1	0.0354	0.0354	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCT15_LARGE_INTESTINE	0.09	1	0.0708	FALSE	344	827	44	306	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND6--MT-TE	3	3	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0.0354	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCT15_LARGE_INTESTINE	1	1	0.0708	FALSE	499	1288	110	792	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	GGA3--NUP85	1	10	GGA3	4273	chr17:73242590:-	NUP85	25232	chr17:73221437:+	ONLY_REF_SPLICE	YES	58	150	0.16	0.07	0.0118	0.1181	LOCAL_INVERSION:-:+:[841],GGA3->chr17:73232694-73258444:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_3,NUP85->chr17:73201754-73231853:+,nucleoporin_85	HCT15_LARGE_INTESTINE	0.07	0.16	0.1299	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	MBTD1--UTP18	1	10	MBTD1	3544	chr17:49333668:-	UTP18	26407	chr17:49340635:+	ONLY_REF_SPLICE	NO	8	143	0.58	0.07	0.0118	0.1181	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},LOCAL_INVERSION:-:+:[365],MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1,UTP18->UTP18,_small_subunit_processome_component,chr17:49337889-49375297:+	HCT15_LARGE_INTESTINE	0.07	0.58	0.1299	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	2	MT-CO3	1070	chrM:9276:+	MT-ATP6	5343	chrM:9085:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.83	0.0354	0.0236	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT15_LARGE_INTESTINE	0.83	1	0.059	FALSE	189	492	56	216	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	1	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	7	0	0.36	1	0.0354	0.0118	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT15_LARGE_INTESTINE	0.36	1	0.0472	FALSE	189	492	56	216	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	CMTM8--CMTM7	3	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	HCT15_LARGE_INTESTINE	1	1	0.0354	FALSE	118	557	29	88	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	IMMP2L--AC003088.1	3	0	IMMP2L	4976	chr7:111127294:-	AC003088.1	21020	chr7:110151171:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,AC003088.1->chr7:110072296-110174811:-	HCT15_LARGE_INTESTINE	1	1	0.0354	TRUE	0	2	0	1	2	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT15_LARGE_INTESTINE	1	1	0.0354	FALSE	189	492	56	216	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	0	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCT15_LARGE_INTESTINE	1	1	0.0354	FALSE	189	492	56	216	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCT15_LARGE_INTESTINE	1	1	0.0354	FALSE	499	1288	110	792	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	NPM1P24--SET	3	0	NPM1P24	1533	chr10:74677760:-	SET	12307	chr9:131456202:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCT15_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	434	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	NPM1P24--SET	3	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HCT15_LARGE_INTESTINE	1	1	0.0354	TRUE	0	0	0	434	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	PRMT3--RBM4B	2	4	PRMT3	1625	chr11:20409700:+	RBM4B	27502	chr11:66436762:-	ONLY_REF_SPLICE	YES	68	33	0.08	0.15	0.0236	0.0473	PRMT3->chr11:20409076-20530840:+,protein_arginine_methyltransferase_3,RBM4B->RNA_binding_motif_protein_4B,chr11:66432469-66445392:-	HCT15_LARGE_INTESTINE	0.08	0.15	0.0709	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	RP11-680G10.1--GSE1	2	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	18	1	0.22	0.0236	0.0354	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCT15_LARGE_INTESTINE	0.22	1	0.059	TRUE	458	1351	185	561	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	SFMBT1--RFT1	2	2	SFMBT1	7119	chr3:53003117:-	RFT1	34986	chr3:53156579:-	ONLY_REF_SPLICE	YES	57	181	0.07	0.02	0.0236	0.0236	YOSHIHARA_TCGA_num_samples[BRCA:2],LOCAL_REARRANGEMENT:-:[41733],SFMBT1->Scm-like_with_four_mbt_domains_1,chr3:52937588-53080766:-,RFT1->RFT1_homolog,chr3:53122499-53164478:-	HCT15_LARGE_INTESTINE	0.02	0.07	0.0472	TRUE	0	0	0	1	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	UBA2--GPI	1	5	UBA2	10047	chr19:34936026:+	GPI	36170	chr19:34887206:+	ONLY_REF_SPLICE	NO	838	2054	0.01	0	0.0118	0.0591	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[26196],UBA2->chr19:34919257-34960853:+,ubiquitin_like_modifier_activating_enzyme_2,GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase	HCT15_LARGE_INTESTINE	0	0.01	0.0709	FALSE	0	0	0	1	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	C12orf4--RRAS2	2	0	C12orf4	1100	chr12:4647575:-	RRAS2	30458	chr11:14317401:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C12orf4->chr12:4596894-4647674:-,chromosome_12_open_reading_frame_4,RRAS2->Oncogene{Bushman},chr11:14299472-14386052:-,related_RAS_viral_(r-ras)_oncogene_homolog_2	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	C17orf76-AS1--EIF4G2	2	0	C17orf76-AS1	1882	chr17:16343017:+	EIF4G2	21226	chr11:10822634:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	C17orf76-AS1->chr17:16342136-16381992:+,EIF4G2->chr11:10818597-10830657:-,eukaryotic_translation_initiation_factor_4_gamma_2	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	2	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	CACUL1--NUP43	2	0	CACUL1	3970	chr10:120488807:-	NUP43	31090	chr6:150048334:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	CACUL1->CDK2_associated_cullin_domain_1,chr10:120433679-120514761:-,NUP43->chr6:150045451-150070801:-,nucleoporin_43kDa	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	ING3--CHD8	2	0	ING3	3654	chr7:120595678:+	CHD8	39393	chr14:21869230:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ING3->Oncogene{Bushman},chr7:120590803-120617270:+,inhibitor_of_growth_family_member_3,CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	3	14	2	43	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	NAP1L4--RPL7	2	0	NAP1L4	1124	chr11:3013484:-	RPL7	30760	chr8:74205032:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NAP1L4->chr11:2965667-3013607:-,nucleosome_assembly_protein_1_like_4,RPL7->chr8:74202506-74208024:-,ribosomal_protein_L7	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCT15_LARGE_INTESTINE	1	1	0.0236	FALSE	292	1546	117	613	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	NUP210--HDAC11	2	0	NUP210	15246	chr3:13407446:-	HDAC11	49019	chr3:13538236:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	LOCAL_INVERSION:-:+:[59415],NUP210->chr3:13357737-13461809:-,nucleoporin_210kDa,HDAC11->chr3:13521224-13547916:+,histone_deacetylase_11	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	PRMT3--RBM4B	2	0	PRMT3	1245	chr11:20409320:+	RBM4B	27502	chr11:66436762:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	PRMT3->chr11:20409076-20530840:+,protein_arginine_methyltransferase_3,RBM4B->RNA_binding_motif_protein_4B,chr11:66432469-66445392:-	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	TBC1D16--RP11-334C17.5	2	0	TBC1D16	3895	chr17:77983959:-	RP11-334C17.5	31265	chr17:78175648:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	TBC1D16->TBC1_domain_family_member_16,chr17:77906142-78009647:-,RP11-334C17.5->chr17:78174472-78179748:-	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	TTC13--XPO7	2	0	TTC13	3487	chr1:231093970:-	XPO7	59209	chr8:21862506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	TTC13->chr1:231041989-231114621:-,tetratricopeptide_repeat_domain_13,XPO7->chr8:21777180-21864096:+,exportin_7	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	ZMIZ2--DCAF8	2	0	ZMIZ2	7621	chr7:44799059:+	DCAF8	42040	chr1:160188230:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZMIZ2->chr7:44788180-44809477:+,zinc_finger_MIZ-type_containing_2,DCAF8->DDB1_and_CUL4_associated_factor_8,chr1:160185505-160254920:-,chr1:160187254-160254920:-	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	ZNF177--HNRNPD	2	0	ZNF177	17024	chr19:9490815:+	HNRNPD	24888	chr4:83292737:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZNF177->chr19:9434850-9493293:+,chr19:9435021-9493293:+,zinc_finger_protein_177,HNRNPD->Oncogene{Bushman},chr4:83273651-83295656:-,heterogeneous_nuclear_ribonucleoprotein_D	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	ZNF738--NUP214	2	0	ZNF738	7035	chr19:21558766:+	NUP214	49512	chr9:134090599:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,NUP214->Oncogene{Bushman},chr9:134000948-134110057:+,nucleoporin_214kDa	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	TMEM106A--SLC25A19	1	3	TMEM106A	5687	chr17:41369331:+	SLC25A19	16796	chr17:73274416:-	ONLY_REF_SPLICE	YES	0	139	1	0.03	0.0118	0.0354	TMEM106A->chr17:41363854-41372061:+,transmembrane_protein_106A,SLC25A19->chr17:73269073-73285591:-,solute_carrier_family_25_member_19	HCT15_LARGE_INTESTINE	0.03	1	0.0472	TRUE	0	0	0	1	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	TPM4--CTD-2231E14.4	1	3	TPM4	12237	chr19:16204563:+	CTD-2231E14.4	21108	chr19:16176915:+	ONLY_REF_SPLICE	YES	2514	0	0	1	0.0118	0.0354	LOCAL_REARRANGEMENT:+:[709],TPM4->Oncogene{Bushman},chr19:16177831-16213813:+,tropomyosin_4,CTD-2231E14.4->chr19:16176547-16177122:+	HCT15_LARGE_INTESTINE	0	1	0.0472	FALSE	0	1	0	1	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	NT5DC3--RP11-642P15.1	1	2	NT5DC3	2434	chr12:104208715:-	RP11-642P15.1	37406	chr12:104287174:-	ONLY_REF_SPLICE	YES	24	7	0.11	0.3	0.0118	0.0236	LOCAL_REARRANGEMENT:-:[2552],NT5DC3->5'-nucleotidase_domain_containing_3,chr12:104164231-104234975:-,RP11-642P15.1->chr12:104237527-104323989:-	HCT15_LARGE_INTESTINE	0.11	0.3	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	NT5DC3--RP11-642P15.1	1	2	NT5DC3	4042	chr12:104200100:-	RP11-642P15.1	37406	chr12:104287174:-	ONLY_REF_SPLICE	YES	23	7	0.12	0.3	0.0118	0.0236	LOCAL_REARRANGEMENT:-:[2552],NT5DC3->5'-nucleotidase_domain_containing_3,chr12:104164231-104234975:-,RP11-642P15.1->chr12:104237527-104323989:-	HCT15_LARGE_INTESTINE	0.12	0.3	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000997
HCT15_LARGE_INTESTINE	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	NO	0	24	1	0.11	0.0118	0.0236	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCT15_LARGE_INTESTINE	0.11	1	0.0354	TRUE	465	1949	224	605	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	DANCR--DNAJC1	1	1	DANCR	1530	chr4:53579126:+	DNAJC1	18204	chr10:22055238:-	ONLY_REF_SPLICE	YES	756	148	0	0.01	0.0118	0.0118	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,DNAJC1->DnaJ_heat_shock_protein_family_(Hsp40)_member_C1,chr10:22045466-22292698:-	HCT15_LARGE_INTESTINE	0	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	DDX50--CCAR1	1	1	DDX50	8109	chr10:70679737:+	CCAR1	34268	chr10:70525645:+	ONLY_REF_SPLICE	YES	90	377	0.02	0.01	0.0118	0.0118	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},DDX50->DEAD-box_helicase_50,chr10:70661034-70706603:+,CCAR1->cell_division_cycle_and_apoptosis_regulator_1,chr10:70480769-70552134:+	HCT15_LARGE_INTESTINE	0.01	0.02	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	DNAJC24--IMMP1L	1	1	DNAJC24	8756	chr11:31436496:+	IMMP1L	23604	chr11:31499306:-	ONLY_REF_SPLICE	YES	58	38	0.03	0.05	0.0118	0.0118	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Nerve_-_Tibial=2,Brain_-_Anterior_cingulate_cortex_(BA24)=1},{Klijn_CCL:Lung=1,Pancreas=1},LOCAL_INVERSION:+:-:[552],DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1	HCT15_LARGE_INTESTINE	0.03	0.05	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	KIAA1731--RNF149	1	1	KIAA1731	21008	chr11:93454578:+	RNF149	44259	chr2:101888206:-	ONLY_REF_SPLICE	YES	46	23	0.04	0.08	0.0118	0.0118	KIAA1731->chr11:93394805-93463522:+,RNF149->chr2:101887681-101925163:-,ring_finger_protein_149	HCT15_LARGE_INTESTINE	0.04	0.08	0.0236	TRUE	0	0	0	2	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	MB21D2--FGF12	1	1	MB21D2	1532	chr3:192635419:-	FGF12	14478	chr3:192078327:-	ONLY_REF_SPLICE	YES	39	0	0.05	1	0.0118	0.0118	NEIGHBORS[29051],MB21D2->Mab-21_domain_containing_2,chr3:192514604-192635950:-,FGF12->Oncogene{Bushman},chr3:191857184-192485553:-,fibroblast_growth_factor_12	HCT15_LARGE_INTESTINE	0.05	1	0.0236	FALSE	0	17	0	46	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	NOP58--SUMO1	1	1	NOP58	1271	chr2:203130709:+	SUMO1	24481	chr2:203084829:-	ONLY_REF_SPLICE	YES	681	460	0	0	0.0118	0.0118	LOCAL_INVERSION:+:-:[27108],NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+,SUMO1->chr2:203070903-203103331:-,small_ubiquitin-like_modifier_1	HCT15_LARGE_INTESTINE	0	0	0.0236	FALSE	0	1	0	1	1	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	PICALM--SYTL2	1	1	PICALM	23636	chr11:85685751:-	SYTL2	31305	chr11:85469157:-	ONLY_REF_SPLICE	YES	313	11	0.01	0.15	0.0118	0.0118	GTEx_FI:{Nerve=[count:2=pct:1.2],Adipose_Tissue=[count:2=pct:0.7],Blood_Vessel=[count:1=pct:0.3]},PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein,SYTL2->chr11:85405267-85522184:-,synaptotagmin_like_2	HCT15_LARGE_INTESTINE	0.01	0.15	0.0236	FALSE	4	2	0	20	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	SLC25A17--ST13	1	1	SLC25A17	1205	chr22:41215199:-	ST13	21943	chr22:41246884:-	ONLY_REF_SPLICE	YES	162	1088	0.01	0	0.0118	0.0118	LOCAL_REARRANGEMENT:-:[5136],SLC25A17->chr22:41165634-41215403:-,solute_carrier_family_25_member_17,ST13->Oncogene{Bushman},chr22:41220539-41253026:-,suppression_of_tumorigenicity_13_(colon_carcinoma)_(Hsp70_interacting_protein)	HCT15_LARGE_INTESTINE	0	0.01	0.0236	FALSE	0	0	0	2	0	FALSE	ACH-000997
HCT15_LARGE_INTESTINE	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0118	0.0118	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCT15_LARGE_INTESTINE	1	1	0.0236	TRUE	62	24	1	171	0	FALSE	ACH-000997
TE125T_FIBROBLAST	TIMM23B--LINC00843	9	1	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1992	0.0221	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	TE125T_FIBROBLAST	1	1	0.2213	TRUE	508	994	45	981	0	FALSE	ACH-000079
TE125T_FIBROBLAST	KLHL29--AC012506.4	3	0	KLHL29	5038	chr2:23785351:+	AC012506.4	30381	chr2:23598331:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0664	0	LOCAL_INVERSION:+:-:[3918],KLHL29->chr2:23608088-23931481:+,kelch_like_family_member_29,AC012506.4->chr2:23598100-23604170:-	TE125T_FIBROBLAST	1	1	0.0664	TRUE	0	0	0	1	0	TRUE	ACH-000079
TE125T_FIBROBLAST	SPAG7--PRSS23	3	0	SPAG7	5546	chr17:4862646:-	PRSS23	12474	chr11:86519926:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0	SPAG7->chr17:4862521-4871167:-,sperm_associated_antigen_7,PRSS23->chr11:86502101-86663952:+,protease,_serine_23	TE125T_FIBROBLAST	1	1	0.0664	TRUE	0	0	0	1	0	TRUE	ACH-000079
TE125T_FIBROBLAST	TXNL4B--CDV3	3	0	TXNL4B	7316	chr16:72119251:-	CDV3	14311	chr3:133302886:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0	TXNL4B->chr16:72078188-72128330:-,thioredoxin_like_4B,CDV3->CDV3_homolog,chr3:133292574-133309105:+	TE125T_FIBROBLAST	1	1	0.0664	TRUE	0	0	0	1	0	TRUE	ACH-000079
TE125T_FIBROBLAST	VIM-AS1--ARHGAP5	3	0	VIM-AS1	1567	chr10:17271418:-	ARHGAP5	15719	chr14:32562449:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+	TE125T_FIBROBLAST	1	1	0.0664	TRUE	0	0	0	1	0	TRUE	ACH-000079
TE125T_FIBROBLAST	VIM-AS1--HSD17B12	3	0	VIM-AS1	1271	chr10:17271714:-	HSD17B12	25706	chr11:43819958:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12	TE125T_FIBROBLAST	1	1	0.0664	TRUE	0	0	0	1	0	TRUE	ACH-000079
TE125T_FIBROBLAST	C9orf3--BMI1	2	0	C9orf3	24370	chr9:97767898:+	BMI1	44005	chr10:22615360:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,BMI1->BMI1_proto-oncogene,_polycomb_ring_finger,Oncogene{Bushman},chr10:22610140-22620413:+	TE125T_FIBROBLAST	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000079
TE125T_FIBROBLAST	CLASP1--SEC22A	2	0	CLASP1	42356	chr2:122144698:-	SEC22A	67520	chr3:122978371:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	CLASP1->chr2:122095352-122407163:-,cytoplasmic_linker_associated_protein_1,SEC22A->SEC22_homolog_A,_vesicle_trafficking_protein,chr3:122920774-122992977:+	TE125T_FIBROBLAST	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000079
TE125T_FIBROBLAST	CTC-429P9.4--KDM3B	2	0	CTC-429P9.4	3954	chr19:16757931:-	KDM3B	22237	chr5:137733867:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	CTC-429P9.4->chr19:16688453-16770926:-,KDM3B->chr5:137688285-137772717:+,lysine_demethylase_3B	TE125T_FIBROBLAST	1	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000079
SW480_LARGE_INTESTINE	COPG2--MKLN1-AS1	65	38	COPG2	4965	chr7:130337709:-	MKLN1-AS1	28285	chr7:130630594:-	ONLY_REF_SPLICE	YES	89	8	0.54	0.93	0.792	0.463	COPG2->chr7:130146089-130353598:-,coatomer_protein_complex_subunit_gamma_2,MKLN1-AS1->chr7:130626519-130794935:-	SW480_LARGE_INTESTINE	0.54	0.93	1.255	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	TIMM23B--LINC00843	47	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5727	0.2315	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SW480_LARGE_INTESTINE	1	1	0.8042	TRUE	508	994	45	981	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	KANSL1--ARL17B	41	19	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	14	63	0.81	0.49	0.4996	0.2315	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SW480_LARGE_INTESTINE	0.49	0.81	0.7311	TRUE	181	1564	124	196	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	MT-TA--MT-TC	43	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5239	0.0487	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW480_LARGE_INTESTINE	1	1	0.5726	FALSE	462	80	0	856	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	ZNF654--HMGB2	40	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4874	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SW480_LARGE_INTESTINE	1	1	0.4874	TRUE	0	0	0	518	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	AKAP13--PDE8A	28	39	AKAP13	1228	chr15:85924029:+	PDE8A	69389	chr15:85607601:+	ONLY_REF_SPLICE	YES	7	5	0.91	0.93	0.3412	0.4752	{Klijn_CCL:Breast=1},AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+,PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A	SW480_LARGE_INTESTINE	0.91	0.93	0.8164	TRUE	0	1	0	2	1	TRUE	ACH-000842
SW480_LARGE_INTESTINE	SLC1A5--MT-ND4L	29	3	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1716	0	0.02	1	0.3533	0.0366	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW480_LARGE_INTESTINE	0.02	1	0.3899	FALSE	0	0	0	189	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	TIMM23--RP11-464F9.1	25	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	345	1	0.08	0.97	0.3046	0.0366	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SW480_LARGE_INTESTINE	0.08	0.97	0.3412	TRUE	519	3926	326	965	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	ARMC10--OSR1	23	0	ARMC10	12353	chr7:102740016:+	OSR1	19766	chr2:19554191:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2802	0	GTEx_FI:{Blood_Vessel=[count:3=pct:0.8],Brain=[count:3=pct:0.5],Thyroid=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Esophagus=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Ovary=[count:1=pct:1.9]},ARMC10->armadillo_repeat_containing_10,chr7:102715328-102740205:+,OSR1->chr2:19551246-19558414:-,odd-skipped_related_transciption_factor_1	SW480_LARGE_INTESTINE	1	1	0.2802	TRUE	15	4	0	8	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	ARNTL2--RP11-59N23.3	21	4	ARNTL2	15041	chr12:27556474:+	RP11-59N23.3	25602	chr12:21912848:+	ONLY_REF_SPLICE	YES	139	0	0.15	1	0.2559	0.0487	ARNTL2->aryl_hydrocarbon_receptor_nuclear_translocator_like_2,chr12:27485787-27576241:+,RP11-59N23.3->chr12:21815247-21912966:+	SW480_LARGE_INTESTINE	0.15	1	0.3046	TRUE	0	0	0	2	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	MT-ND6--MT-TE	15	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.1828	0.1462	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW480_LARGE_INTESTINE	0.9	1	0.329	FALSE	499	1288	110	792	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	MT-ND6--MT-TE	16	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.195	0.0853	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW480_LARGE_INTESTINE	1	1	0.2803	FALSE	499	1288	110	792	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	MIR4435-1HG--ANAPC1	14	14	MIR4435-1HG	14499	chr2:112101638:-	ANAPC1	48681	chr2:112596089:-	ONLY_REF_SPLICE	YES	66	49	0.3	0.36	0.1706	0.1706	MIR4435-1HG->chr2:111953927-112252677:-,ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-	SW480_LARGE_INTESTINE	0.3	0.36	0.3412	TRUE	0	1	0	4	1	TRUE	ACH-000842
SW480_LARGE_INTESTINE	PTK2--TRAPPC9	12	10	PTK2	32129	chr8:141771264:-	TRAPPC9	74677	chr8:141381279:-	ONLY_REF_SPLICE	YES	29	2	0.43	0.92	0.1462	0.1218	{Klijn_CCL:Colo-Rectal=1},PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2,TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9	SW480_LARGE_INTESTINE	0.43	0.92	0.268	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	MT-ND6--MT-TE	4	35	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0.4265	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW480_LARGE_INTESTINE	1	1	0.4752	FALSE	499	1288	110	792	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	MT-ND6--MT-TE	8	19	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0975	0.2315	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW480_LARGE_INTESTINE	1	1	0.329	FALSE	499	1288	110	792	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	YTHDF3--NKAIN3	11	4	YTHDF3	7936	chr8:64100303:+	NKAIN3	24664	chr8:63877913:+	ONLY_REF_SPLICE	YES	46	0	0.25	1	0.134	0.0487	YTHDF3->YTH_N6-methyladenosine_RNA_binding_protein_3,chr8:64081112-64125346:+,NKAIN3->Na+/K+_transporting_ATPase_interacting_3,chr8:63161150-63912211:+	SW480_LARGE_INTESTINE	0.25	1	0.1827	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	HSP90AB1--MT-RNR2	11	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2991	0	0	1	0.134	0.0122	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SW480_LARGE_INTESTINE	0	1	0.1462	FALSE	13	9	0	364	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	MT-TA--MT-TC	10	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1218	0.0487	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW480_LARGE_INTESTINE	1	1	0.1705	FALSE	462	80	0	856	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	SLC1A5--MT-ND4L	9	6	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1736	0	0.01	1	0.1097	0.0731	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW480_LARGE_INTESTINE	0.01	1	0.1828	FALSE	0	0	0	189	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	MT-ND6--MT-TE	8	7	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0975	0.0853	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW480_LARGE_INTESTINE	1	1	0.1828	FALSE	499	1288	110	792	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	C15orf57--CBX3	7	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	91	60	0.15	0.21	0.0853	0.1097	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SW480_LARGE_INTESTINE	0.15	0.21	0.195	TRUE	267	562	48	632	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	HSP90AB1--MT-RNR2	9	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2981	0	0	1	0.1097	0.0122	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SW480_LARGE_INTESTINE	0	1	0.1219	FALSE	13	9	0	364	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	MT-ND6--MT-TE	3	21	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.0366	0.2559	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW480_LARGE_INTESTINE	0.89	1	0.2925	FALSE	499	1288	110	792	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	MT-ND6--MT-TE	4	14	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0.1706	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW480_LARGE_INTESTINE	1	1	0.2193	FALSE	499	1288	110	792	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	ARMC10--OSR1	7	0	ARMC10	12349	chr7:102740012:+	OSR1	19762	chr2:19554195:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0853	0	GTEx_FI:{Blood_Vessel=[count:3=pct:0.8],Brain=[count:3=pct:0.5],Thyroid=[count:2=pct:1.1],Nerve=[count:2=pct:1.2],Esophagus=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Prostate=[count:1=pct:1.6],Ovary=[count:1=pct:1.9]},ARMC10->armadillo_repeat_containing_10,chr7:102715328-102740205:+,OSR1->chr2:19551246-19558414:-,odd-skipped_related_transciption_factor_1	SW480_LARGE_INTESTINE	1	1	0.0853	TRUE	15	4	0	8	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0853	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW480_LARGE_INTESTINE	1	1	0.0853	FALSE	462	80	0	856	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	7	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0853	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW480_LARGE_INTESTINE	1	1	0.0853	FALSE	515	4851	409	746	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	C15orf57--CBX3	5	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	87	64	0.12	0.16	0.0609	0.0853	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SW480_LARGE_INTESTINE	0.12	0.16	0.1462	TRUE	267	562	48	632	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	COPG2--MKLN1-AS1	1	22	COPG2	3885	chr7:130347807:-	MKLN1-AS1	28285	chr7:130630594:-	ONLY_REF_SPLICE	YES	95	8	0.19	0.74	0.0122	0.2681	COPG2->chr7:130146089-130353598:-,coatomer_protein_complex_subunit_gamma_2,MKLN1-AS1->chr7:130626519-130794935:-	SW480_LARGE_INTESTINE	0.19	0.74	0.2803	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	MT-ND6--MT-TE	5	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0609	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW480_LARGE_INTESTINE	1	1	0.0609	FALSE	499	1288	110	792	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	EIF4A1P10--HSP90AA1	4	1	EIF4A1P10	1852	chrX:91368609:-	HSP90AA1	12841	chr14:102548565:-	INCL_NON_REF_SPLICE	YES	238	8450	0.02	0	0.0487	0.0122	EIF4A1P10->chrX:91368245-91369460:-,eukaryotic_translation_initiation_factor_4A1_pseudogene_10,HSP90AA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr14:102547075-102606036:-,heat_shock_protein_90kDa_alpha_family_class_A_member_1	SW480_LARGE_INTESTINE	0	0.02	0.0609	FALSE	0	0	0	2	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	FAM160B2--TUSC3	4	1	FAM160B2	7617	chr8:21956871:+	TUSC3	23251	chr8:15517016:+	ONLY_REF_SPLICE	YES	9	0	0.36	1	0.0487	0.0122	{Klijn_CCL:Colo-Rectal=1},FAM160B2->chr8:21946670-21962409:+,family_with_sequence_similarity_160_member_B2,TUSC3->chr8:15274724-15624158:+,tumor_suppressor_candidate_3	SW480_LARGE_INTESTINE	0.36	1	0.0609	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	ANP32B--SEPT7	4	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	SW480_LARGE_INTESTINE	1	1	0.0487	TRUE	1	1	0	18	1	TRUE	ACH-000842
SW480_LARGE_INTESTINE	MIR4435-1HG--ANAPC1	4	0	MIR4435-1HG	14499	chr2:112101638:-	ANAPC1	52117	chr2:112589011:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0487	0	MIR4435-1HG->chr2:111953927-112252677:-,ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-	SW480_LARGE_INTESTINE	1	1	0.0487	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	TUBB4B--MT-CO3	4	0	TUBB4B	2562	chr9:140137226:+	MT-CO3	6557	chrM:9268:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0487	0	TUBB4B->chr9:140135665-140138159:+,tubulin_beta_4B_class_IVb,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SW480_LARGE_INTESTINE	1	1	0.0487	FALSE	0	0	0	1	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	MYEOV--FGF3	3	0	MYEOV	1439	chr11:69062043:+	FGF3	14945	chr11:69631191:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	MYEOV->Oncogene{Bushman},chr11:69061605-69182494:+,myeloma_overexpressed,FGF3->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69624992-69633792:-,fibroblast_growth_factor_3	SW480_LARGE_INTESTINE	1	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	PTBP1--CAPN15	3	0	PTBP1	1431	chr19:797505:+	CAPN15	22553	chr16:596817:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1,CAPN15->calpain_15,chr16:577717-604636:+	SW480_LARGE_INTESTINE	1	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	3	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW480_LARGE_INTESTINE	1	1	0.0366	FALSE	407	2205	196	549	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	SLC4A7--PPP2R3A	3	0	SLC4A7	8015	chr3:27475407:-	PPP2R3A	58132	chr3:135863885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0366	0	SLC4A7->chr3:27414214-27525911:-,solute_carrier_family_4_member_7,PPP2R3A->chr3:135684515-135866733:+,protein_phosphatase_2_regulatory_subunit_B'',_alpha	SW480_LARGE_INTESTINE	1	1	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	RABGAP1L--RP3-436N22.3	2	3	RABGAP1L	17135	chr1:174340210:+	RP3-436N22.3	55637	chr1:173571911:+	ONLY_REF_SPLICE	YES	10	0	0.33	1	0.0244	0.0366	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,RP3-436N22.3->chr1:173524390-173581911:+	SW480_LARGE_INTESTINE	0.33	1	0.061	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	ATG4B--C9orf3	2	0	ATG4B	3487	chr2:242590750:+	C9orf3	56322	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	ATG4B->autophagy_related_4B_cysteine_peptidase,chr2:242576628-242613272:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SW480_LARGE_INTESTINE	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	CHMP3--LINC00152	2	0	CHMP3	4551	chr2:86790427:-	LINC00152	30364	chr2:87820726:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	CHMP3->charged_multivesicular_body_protein_3,chr2:86730554-86948245:-,LINC00152->chr2:87754887-87906324:+,long_intergenic_non-protein_coding_RNA_152	SW480_LARGE_INTESTINE	1	1	0.0244	TRUE	0	0	0	2	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	DCUN1D2--TFDP1	2	0	DCUN1D2	1286	chr13:114144982:-	TFDP1	18891	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[93746],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	SW480_LARGE_INTESTINE	1	1	0.0244	TRUE	0	1	0	6	1	TRUE	ACH-000842
SW480_LARGE_INTESTINE	KANSL1--ARL17B	2	0	KANSL1	7536	chr17:44248221:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SW480_LARGE_INTESTINE	1	1	0.0244	TRUE	16	5	0	9	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	MIR4435-1HG--ANAPC1	1	4	MIR4435-1HG	12168	chr2:112123138:-	ANAPC1	48681	chr2:112596089:-	ONLY_REF_SPLICE	NO	158	49	0.03	0.09	0.0122	0.0487	MIR4435-1HG->chr2:111953927-112252677:-,ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-	SW480_LARGE_INTESTINE	0.03	0.09	0.0609	TRUE	0	0	0	1	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	PLK1S1--XRN2	2	0	PLK1S1	2285	chr20:21112800:+	XRN2	36641	chr20:21335427:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	NEIGHBORS[56682],PLK1S1->Oncogene{Bushman},chr20:21106624-21227260:+,XRN2->5'-3'_exoribonuclease_2,chr20:21283942-21370463:+	SW480_LARGE_INTESTINE	1	1	0.0244	FALSE	0	0	0	1	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	RAB20--ING1	2	0	RAB20	1386	chr13:111213695:-	ING1	10788	chr13:111371576:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	GTEx_FI:{Blood=[count:3=pct:1.7],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=3,Lung=1,Adrenal_Gland=1},RAB20->RAB20,_member_RAS_oncogene_family,chr13:111175417-111214080:-,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	SW480_LARGE_INTESTINE	1	1	0.0244	TRUE	4	0	0	3	0	FALSE	ACH-000842
SW480_LARGE_INTESTINE	RSRC1--SCHIP1	2	0	RSRC1	11834	chr3:158015864:+	SCHIP1	30434	chr3:159603996:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	RSRC1->arginine/serine-rich_coiled-coil_1,chr3:157823644-158263519:+,SCHIP1->chr3:159557650-159615149:+,schwannomin_interacting_protein_1	SW480_LARGE_INTESTINE	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	TINAGL1--SERINC2	2	0	TINAGL1	1081	chr1:32042196:+	SERINC2	25231	chr1:31905814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0244	0	TINAGL1->chr1:32042116-32053288:+,tubulointerstitial_nephritis_antigen_like_1,SERINC2->chr1:31882412-31907525:+,serine_incorporator_2	SW480_LARGE_INTESTINE	1	1	0.0244	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	LARP4B--GTPBP4	1	2	LARP4B	8341	chr10:909683:-	GTPBP4	31630	chr10:1038429:+	ONLY_REF_SPLICE	NO	17	3	0.15	0.5	0.0122	0.0244	LOCAL_INVERSION:-:+:[56774],LARP4B->La_ribonucleoprotein_domain_family_member_4B,chr10:855484-977564:-,GTPBP4->GTP_binding_protein_4,chr10:1034338-1065876:+	SW480_LARGE_INTESTINE	0.15	0.5	0.0366	TRUE	0	0	0	1	0	TRUE	ACH-000842
SW480_LARGE_INTESTINE	HMGA2--LUM	1	1	HMGA2	5315	chr12:66232349:+	LUM	30462	chr12:91498096:-	ONLY_REF_SPLICE	YES	112	1	0.02	0.67	0.0122	0.0122	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,LUM->chr12:91496406-91505608:-,lumican	SW480_LARGE_INTESTINE	0.02	0.67	0.0244	TRUE	0	0	0	8	0	FALSE	ACH-000842
SW837_LARGE_INTESTINE	TIMM23B--LINC00843	19	6	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3395	0.1072	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SW837_LARGE_INTESTINE	1	1	0.4467	TRUE	508	994	45	981	0	FALSE	ACH-000421
SW837_LARGE_INTESTINE	ANKRD13C--PTGER3	13	4	ANKRD13C	11079	chr1:70758071:-	PTGER3	40940	chr1:71318542:-	ONLY_REF_SPLICE	YES	6	0	0.74	1	0.2323	0.0715	ANKRD13C->ankyrin_repeat_domain_13C,chr1:70726271-70820417:-,PTGER3->chr1:71318036-71513491:-,prostaglandin_E_receptor_3	SW837_LARGE_INTESTINE	0.74	1	0.3038	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	RBM12B--FSBP	10	7	RBM12B	1389	chr8:94752857:-	FSBP	16089	chr8:95444884:-	ONLY_REF_SPLICE	YES	5	0	0.77	1	0.1787	0.1251	RBM12B->RNA_binding_motif_protein_12B,chr8:94741584-94753245:-,FSBP->chr8:95390605-95449180:-,fibrinogen_silencer_binding_protein	SW837_LARGE_INTESTINE	0.77	1	0.3038	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	TAB2--PPP1R14C	10	0	TAB2	2225	chr6:149639151:+	PPP1R14C	22604	chr6:150535880:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1787	0	TAB2->TGF-beta_activated_kinase_1/MAP3K7_binding_protein_2,chr6:149539777-149732749:+,PPP1R14C->chr6:150464212-150571493:+,protein_phosphatase_1_regulatory_inhibitor_subunit_14C	SW837_LARGE_INTESTINE	1	1	0.1787	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	RBM12B--FSBP	8	4	RBM12B	1137	chr8:94753109:-	FSBP	17799	chr8:95423543:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.1429	0.0715	RBM12B->RNA_binding_motif_protein_12B,chr8:94741584-94753245:-,FSBP->chr8:95390605-95449180:-,fibrinogen_silencer_binding_protein	SW837_LARGE_INTESTINE	0.92	1	0.2144	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	TIMM23--RP11-464F9.1	9	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1608	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SW837_LARGE_INTESTINE	1	1	0.1608	TRUE	519	3926	326	965	0	FALSE	ACH-000421
SW837_LARGE_INTESTINE	SPRED2--RAB1A	7	6	SPRED2	1676	chr2:65659096:-	RAB1A	19919	chr2:65331940:-	ONLY_REF_SPLICE	YES	1	84	0.93	0.13	0.1251	0.1072	{Klijn_CCL:Colo-Rectal=1},SPRED2->chr2:65537985-65659771:-,sprouty_related_EVH1_domain_containing_2,RAB1A->Oncogene{Bushman},RAB1A,_member_RAS_oncogene_family,chr2:65297835-65357240:-	SW837_LARGE_INTESTINE	0.13	0.93	0.2323	TRUE	0	1	0	1	1	TRUE	ACH-000421
SW837_LARGE_INTESTINE	RP11-680G10.1--GSE1	7	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	14	1	0.44	0.1251	0.0715	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW837_LARGE_INTESTINE	0.44	1	0.1966	TRUE	465	1949	224	605	0	FALSE	ACH-000421
SW837_LARGE_INTESTINE	RBM12B--FSBP	6	6	RBM12B	3679	chr8:94749535:-	FSBP	17799	chr8:95423543:-	ONLY_REF_SPLICE	YES	6	0	0.67	1	0.1072	0.1072	RBM12B->RNA_binding_motif_protein_12B,chr8:94741584-94753245:-,FSBP->chr8:95390605-95449180:-,fibrinogen_silencer_binding_protein	SW837_LARGE_INTESTINE	0.67	1	0.2144	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	RBM12B--FSBP	6	5	RBM12B	1389	chr8:94752857:-	FSBP	17799	chr8:95423543:-	ONLY_REF_SPLICE	YES	5	0	0.69	1	0.1072	0.0893	RBM12B->RNA_binding_motif_protein_12B,chr8:94741584-94753245:-,FSBP->chr8:95390605-95449180:-,fibrinogen_silencer_binding_protein	SW837_LARGE_INTESTINE	0.69	1	0.1965	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	MT-ND5--MT-ND4	5	2	MT-ND5	2503	chrM:13839:+	MT-ND4	6902	chrM:11849:+	INCL_NON_REF_SPLICE	YES	639	116	0.01	0.06	0.0893	0.0357	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[200],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SW837_LARGE_INTESTINE	0.01	0.06	0.125	FALSE	47	28	1	23	0	FALSE	ACH-000421
SW837_LARGE_INTESTINE	ANKRD11--MT-CO2	4	0	ANKRD11	26309	chr16:89349910:-	MT-CO2	38686	chrM:8027:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0715	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SW837_LARGE_INTESTINE	1	1	0.0715	FALSE	0	0	0	1	0	FALSE	ACH-000421
SW837_LARGE_INTESTINE	RP11-120D5.1--MID1	3	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	2	0.83	0.71	0.0536	0.0357	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SW837_LARGE_INTESTINE	0.71	0.83	0.0893	FALSE	16	356	14	466	0	FALSE	ACH-000421
SW837_LARGE_INTESTINE	CALM3--MT-ND4L	3	0	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW837_LARGE_INTESTINE	1	1	0.0536	FALSE	1	1	0	107	0	FALSE	ACH-000421
SW837_LARGE_INTESTINE	DCK--SLC35B1	3	0	DCK	3596	chr4:71863899:+	SLC35B1	16159	chr17:47784430:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0536	0	DCK->chr4:71858255-71896631:+,deoxycytidine_kinase,SLC35B1->chr17:47778305-47786376:-,solute_carrier_family_35_member_B1	SW837_LARGE_INTESTINE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	FAM135A--DIP2B	3	0	FAM135A	25362	chr6:71243557:+	DIP2B	51595	chr12:51086732:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0536	0	FAM135A->chr6:71122644-71270877:+,family_with_sequence_similarity_135_member_A,DIP2B->chr12:50898768-51142450:+,disco_interacting_protein_2_homolog_B	SW837_LARGE_INTESTINE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	IFT43--RNPEP	3	0	IFT43	3738	chr14:76455320:+	RNPEP	18088	chr1:201958032:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0536	0	IFT43->chr14:76368479-76550928:+,intraflagellar_transport_43,RNPEP->arginyl_aminopeptidase,chr1:201951500-201975275:+	SW837_LARGE_INTESTINE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	PCDH1--BCAM	3	0	PCDH1	8461	chr5:141243451:-	BCAM	20365	chr19:45316703:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	PCDH1->chr5:141232938-141258811:-,protocadherin_1,BCAM->basal_cell_adhesion_molecule_(Lutheran_blood_group),chr19:45312328-45324673:+	SW837_LARGE_INTESTINE	1	1	0.0536	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	RBM12B--FSBP	1	5	RBM12B	1137	chr8:94753109:-	FSBP	16089	chr8:95444884:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0179	0.0893	RBM12B->RNA_binding_motif_protein_12B,chr8:94741584-94753245:-,FSBP->chr8:95390605-95449180:-,fibrinogen_silencer_binding_protein	SW837_LARGE_INTESTINE	0.86	1	0.1072	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	ANK3--SGMS1	2	0	ANK3	1228	chr10:62493021:-	SGMS1	90632	chr10:52071175:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-,SGMS1->Oncogene{Bushman},chr10:52065360-52384923:-,sphingomyelin_synthase_1	SW837_LARGE_INTESTINE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	ETNK1--SEPT7	2	0	ETNK1	1512	chr12:22778520:+	SEPT7	26799	chr7:35912276:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	ETNK1->chr12:22778009-22843599:+,ethanolamine_kinase_1,SEPT7->chr7:35840542-35944917:+,septin_7	SW837_LARGE_INTESTINE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	NCOR2--UBC	2	0	NCOR2	3484	chr12:125002686:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SW837_LARGE_INTESTINE	1	1	0.0357	TRUE	7	26	3	12	0	FALSE	ACH-000421
SW837_LARGE_INTESTINE	PRSS23--NXNL2	2	0	PRSS23	8412	chr11:86534635:+	NXNL2	25078	chr9:91159294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	PRSS23->chr11:86502101-86663952:+,protease,_serine_23,NXNL2->chr9:91150016-91199189:+,nucleoredoxin-like_2	SW837_LARGE_INTESTINE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	RP11-465N4.4--RNPEP	2	0	RP11-465N4.4	1554	chr1:201978928:-	RNPEP	16664	chr1:201973482:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	NEIGHBORS_OVERLAP:-:+:[6053],RP11-465N4.4->chr1:201969222-201979481:-,RNPEP->arginyl_aminopeptidase,chr1:201951500-201975275:+	SW837_LARGE_INTESTINE	1	1	0.0357	FALSE	0	0	0	1	0	FALSE	ACH-000421
SW837_LARGE_INTESTINE	RP11-680G10.1--GSE1	1	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	5	1	0.5	0.0179	0.0715	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW837_LARGE_INTESTINE	0.5	1	0.0894	TRUE	458	1351	185	561	0	FALSE	ACH-000421
SW837_LARGE_INTESTINE	TACC3--METRNL	2	0	TACC3	12081	chr4:1741729:+	METRNL	20511	chr17:81042814:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3,METRNL->chr17:81037567-81052864:+,meteorin,_glial_cell_differentiation_regulator-like	SW837_LARGE_INTESTINE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	TCERG1--CDC25A	2	0	TCERG1	18530	chr5:145872601:+	CDC25A	38760	chr3:48222330:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	TCERG1->chr5:145826874-145891524:+,transcription_elongation_regulator_1,CDC25A->Oncogene{Bushman},cell_division_cycle_25A,chr3:48198636-48229892:-	SW837_LARGE_INTESTINE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	TMEM127--CPSF7	2	0	TMEM127	1126	chr2:96931607:-	CPSF7	14182	chr11:61196762:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	TMEM127->chr2:96914254-96931732:-,transmembrane_protein_127,CPSF7->chr11:61170121-61197503:-,cleavage_and_polyadenylation_specific_factor_7	SW837_LARGE_INTESTINE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000421
SW837_LARGE_INTESTINE	TMEM14B--STK3	2	0	TMEM14B	5163	chr6:10755465:+	STK3	49900	chr8:99539145:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	TMEM14B->chr6:10747992-10852986:+,transmembrane_protein_14B,STK3->chr8:99413631-99955055:-,serine/threonine_kinase_3	SW837_LARGE_INTESTINE	1	1	0.0357	TRUE	0	0	0	1	0	TRUE	ACH-000421
HS870T_FIBROBLAST	TIMM23B--LINC00843	98	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.2589	0.4111	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS870T_FIBROBLAST	0.99	1	1.67	TRUE	508	994	45	981	0	FALSE	ACH-000340
HS870T_FIBROBLAST	TIMM23--RP11-464F9.1	52	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	288	2	0.16	0.96	0.668	0.0257	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS870T_FIBROBLAST	0.16	0.96	0.6937	TRUE	519	3926	326	965	0	FALSE	ACH-000340
HS870T_FIBROBLAST	PLXDC1--TAF13	31	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3982	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS870T_FIBROBLAST	1	1	0.3982	TRUE	7	10	0	216	0	FALSE	ACH-000340
HS870T_FIBROBLAST	MT-TA--MT-TC	22	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2826	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS870T_FIBROBLAST	1	1	0.2826	FALSE	462	80	0	856	0	FALSE	ACH-000340
HS870T_FIBROBLAST	OR51S1--TP53I11	20	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2569	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HS870T_FIBROBLAST	1	1	0.2569	TRUE	402	216	10	229	0	FALSE	ACH-000340
HS870T_FIBROBLAST	ZNF654--HMGB2	20	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2569	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HS870T_FIBROBLAST	1	1	0.2569	TRUE	0	0	0	518	0	FALSE	ACH-000340
HS870T_FIBROBLAST	C15orf57--CBX3	13	15	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	47	34	0.37	0.45	0.167	0.1927	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS870T_FIBROBLAST	0.37	0.45	0.3597	TRUE	267	562	48	632	0	FALSE	ACH-000340
HS870T_FIBROBLAST	C15orf57--CBX3	11	18	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	51	34	0.36	0.46	0.1413	0.2312	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS870T_FIBROBLAST	0.36	0.46	0.3725	TRUE	267	562	48	632	0	FALSE	ACH-000340
HS870T_FIBROBLAST	PRR16--CTD-2334D19.1	11	8	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	144	0	0.12	1	0.1413	0.1028	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS870T_FIBROBLAST	0.12	1	0.2441	FALSE	56	216	12	147	0	FALSE	ACH-000340
HS870T_FIBROBLAST	MT-ND6--MT-TE	12	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1542	0.0128	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS870T_FIBROBLAST	1	1	0.167	FALSE	499	1288	110	792	0	FALSE	ACH-000340
HS870T_FIBROBLAST	MT-ND6--MT-TE	9	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1156	0.1542	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS870T_FIBROBLAST	1	1	0.2698	FALSE	499	1288	110	792	0	FALSE	ACH-000340
HS870T_FIBROBLAST	RP11-680G10.1--GSE1	10	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1285	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS870T_FIBROBLAST	1	1	0.1285	TRUE	465	1949	224	605	0	FALSE	ACH-000340
HS870T_FIBROBLAST	RP4-565E6.1--HYDIN	8	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1028	0.0514	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS870T_FIBROBLAST	1	1	0.1542	TRUE	456	1387	91	133	0	FALSE	ACH-000340
HS870T_FIBROBLAST	COL1A1--NPM1	8	3	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	7296	1	0	0.92	0.1028	0.0385	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HS870T_FIBROBLAST	0	0.92	0.1413	TRUE	0	0	0	31	0	FALSE	ACH-000340
HS870T_FIBROBLAST	IGFBP4--NPM1	8	2	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	3858	1	0	0.91	0.1028	0.0257	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HS870T_FIBROBLAST	0	0.91	0.1285	TRUE	0	0	0	38	0	FALSE	ACH-000340
HS870T_FIBROBLAST	MT-ND6--MT-TE	8	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1028	0.0257	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS870T_FIBROBLAST	1	1	0.1285	FALSE	499	1288	110	792	0	FALSE	ACH-000340
HS870T_FIBROBLAST	MT-ND6--MT-TE	4	17	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0514	0.2184	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS870T_FIBROBLAST	1	1	0.2698	FALSE	499	1288	110	792	0	FALSE	ACH-000340
HS870T_FIBROBLAST	CHSY3--HSPA8P4	7	1	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	28	0	0.22	1	0.0899	0.0128	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	HS870T_FIBROBLAST	0.22	1	0.1027	FALSE	89	26	1	44	0	FALSE	ACH-000340
HS870T_FIBROBLAST	PRR16--CTD-2334D19.1	4	12	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	62	0	0.21	1	0.0514	0.1542	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS870T_FIBROBLAST	0.21	1	0.2056	FALSE	21	45	1	60	0	FALSE	ACH-000340
HS870T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	6	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0771	0.0257	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS870T_FIBROBLAST	0.8	1	0.1028	FALSE	407	2205	196	549	0	FALSE	ACH-000340
HS870T_FIBROBLAST	RP11-680G10.1--GSE1	5	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0642	0.0128	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS870T_FIBROBLAST	0.86	1	0.077	TRUE	458	1351	185	561	0	FALSE	ACH-000340
HS870T_FIBROBLAST	CDH13--RP11-22H5.2	5	0	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0642	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	HS870T_FIBROBLAST	1	1	0.0642	FALSE	14	31	0	36	0	FALSE	ACH-000340
HS870T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0.0642	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS870T_FIBROBLAST	1	1	0.1027	FALSE	467	2173	244	435	0	FALSE	ACH-000340
HS870T_FIBROBLAST	RP11-155G15.2--RP11-1E3.1	3	3	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0.0385	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HS870T_FIBROBLAST	1	1	0.077	FALSE	46	201	11	112	0	FALSE	ACH-000340
HS870T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.0385	0.0257	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS870T_FIBROBLAST	0.71	1	0.0642	FALSE	515	4851	409	746	0	FALSE	ACH-000340
HS870T_FIBROBLAST	MT-TA--MT-TC	3	1	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0.0128	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS870T_FIBROBLAST	1	1	0.0513	FALSE	462	80	0	856	0	FALSE	ACH-000340
HS870T_FIBROBLAST	RP11-166D19.1--DNM3OS	3	1	RP11-166D19.1	5868	chr11:121971082:-	DNM3OS	18442	chr1:172113577:-	ONLY_REF_SPLICE	YES	27	3	0.13	0.57	0.0385	0.0128	GTEx_FI:{Ovary=[count:4=pct:7.5],Blood_Vessel=[count:3=pct:0.8],Thyroid=[count:2=pct:1.1],Uterus=[count:1=pct:2.3],Esophagus=[count:1=pct:0.2]},RP11-166D19.1->chr11:121899063-121987031:-,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	HS870T_FIBROBLAST	0.13	0.57	0.0513	TRUE	11	20	1	11	0	FALSE	ACH-000340
HS870T_FIBROBLAST	RPSAP52--HMGA2	3	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	18	190	0.18	0.02	0.0385	0.0128	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HS870T_FIBROBLAST	0.02	0.18	0.0513	FALSE	0	59	0	125	0	FALSE	ACH-000340
HS870T_FIBROBLAST	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS870T_FIBROBLAST	1	1	0.0385	FALSE	499	1288	110	792	0	FALSE	ACH-000340
HS870T_FIBROBLAST	NRIP1--AF127936.7	3	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0385	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS870T_FIBROBLAST	1	1	0.0385	FALSE	292	1546	117	613	0	FALSE	ACH-000340
HS870T_FIBROBLAST	PRR16--CTD-2334D19.1	1	8	PRR16	3559	chr5:119816988:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	NO	171	0	0.05	1	0.0128	0.1028	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS870T_FIBROBLAST	0.05	1	0.1156	FALSE	1	5	0	12	0	FALSE	ACH-000340
HS870T_FIBROBLAST	SERPINE1--MT-ND4	3	0	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0385	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	HS870T_FIBROBLAST	1	1	0.0385	FALSE	1	0	0	29	0	FALSE	ACH-000340
HS870T_FIBROBLAST	PRKD1--CTD-2251F13.1	2	3	PRKD1	2678	chr14:30516916:-	CTD-2251F13.1	38031	chr14:30449473:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0.0385	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,CTD-2251F13.1->chr14:30421603-30766249:-	HS870T_FIBROBLAST	1	1	0.0642	TRUE	0	0	0	2	0	TRUE	ACH-000340
HS870T_FIBROBLAST	PRKD1--CTD-2251F13.1	2	2	PRKD1	1600	chr14:30660505:-	CTD-2251F13.1	38031	chr14:30449473:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0.0257	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,CTD-2251F13.1->chr14:30421603-30766249:-	HS870T_FIBROBLAST	1	1	0.0514	TRUE	0	1	0	5	1	TRUE	ACH-000340
HS870T_FIBROBLAST	CDH13--RP11-22H5.2	2	0	CDH13	7013	chr16:82753080:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	HS870T_FIBROBLAST	1	1	0.0257	FALSE	1	1	0	8	0	FALSE	ACH-000340
HS870T_FIBROBLAST	FAM172A--NR2F1-AS1	2	0	FAM172A	12880	chr5:93111865:-	NR2F1-AS1	39228	chr5:92747215:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	NEIGHBORS[32421],FAM172A->chr5:92953775-93447404:-,family_with_sequence_similarity_172_member_A,NR2F1-AS1->NR2F1_antisense_RNA_1,chr5:92745065-92921354:-	HS870T_FIBROBLAST	1	1	0.0257	FALSE	3	3	0	3	0	FALSE	ACH-000340
HS870T_FIBROBLAST	RAB40C--ZDHHC8	2	0	RAB40C	2077	chr16:640433:+	ZDHHC8	16174	chr22:20126717:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	RAB40C->RAB40C,_member_RAS_oncogene_family,chr16:639357-679272:+,ZDHHC8->chr22:20116979-20135530:+,zinc_finger_DHHC-type_containing_8	HS870T_FIBROBLAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000340
HS870T_FIBROBLAST	RP11-20I20.2--NAP1L4	2	0	RP11-20I20.2	1114	chr4:1107540:+	NAP1L4	12612	chr11:3000467:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	RP11-20I20.2->chr4:1107427-1126765:+,NAP1L4->chr11:2965667-3013607:-,nucleosome_assembly_protein_1_like_4	HS870T_FIBROBLAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000340
HS870T_FIBROBLAST	ZEB1--LRPAP1	2	0	ZEB1	1798	chr10:31608221:+	LRPAP1	30727	chr4:3526778:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0257	0	ZEB1->chr10:31607424-31818742:+,zinc_finger_E-box_binding_homeobox_1,LRPAP1->LDL_receptor_related_protein_associated_protein_1,chr4:3508103-3534286:-	HS870T_FIBROBLAST	1	1	0.0257	TRUE	0	0	0	1	0	TRUE	ACH-000340
HS870T_FIBROBLAST	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	3	28	0.5	0.1	0.0128	0.0257	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HS870T_FIBROBLAST	0.1	0.5	0.0385	FALSE	16	356	14	466	0	FALSE	ACH-000340
HS870T_FIBROBLAST	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.18	1	0.0128	0.0128	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS870T_FIBROBLAST	0.18	1	0.0256	FALSE	164	806	69	479	0	FALSE	ACH-000340
COLO668_LUNG	NFYC--ZFP69B	654	356	NFYC	1220	chr1:41157539:+	ZFP69B	29792	chr1:40922617:+	ONLY_REF_SPLICE	YES	275	475	0.79	0.68	7.6315	4.1542	NFYC->chr1:41157320-41237275:+,nuclear_transcription_factor_Y_subunit_gamma,ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+	COLO668_LUNG	0.68	0.79	11.7857	TRUE	0	1	0	1	1	TRUE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	320	4	RPL14	4483	chr3:40503515:+	AC005540.3	8966	chr2:191745649:-	INCL_NON_REF_SPLICE	YES	3093	2	0.09	0.99	3.7341	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0.09	0.99	3.7808	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	ZFP69B--RLF	137	97	ZFP69B	4568	chr1:40923111:+	RLF	15704	chr1:40688246:+	ONLY_REF_SPLICE	YES	1041	564	0.18	0.29	1.5987	1.1319	HGNC_GENEFAM,ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+,RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion	COLO668_LUNG	0.18	0.29	2.7306	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	LINC01014--KCNMB2	106	19	LINC01014	1175	chr3:178137163:+	KCNMB2	10864	chr3:178525131:+	ONLY_REF_SPLICE	YES	6	108	0.95	0.54	1.2369	0.2217	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	COLO668_LUNG	0.54	0.95	1.4586	FALSE	11	60	26	37	0	FALSE	ACH-000803
COLO668_LUNG	NFYC--ZFP69B	7	369	NFYC	1553	chr1:41157872:+	ZFP69B	29792	chr1:40922617:+	ONLY_REF_SPLICE	YES	221	475	0.63	0.44	0.0817	4.3059	NFYC->chr1:41157320-41237275:+,nuclear_transcription_factor_Y_subunit_gamma,ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+	COLO668_LUNG	0.44	0.63	4.3876	TRUE	0	1	0	1	1	TRUE	ACH-000803
COLO668_LUNG	NFYC--ZFP69B	3	356	NFYC	1411	chr1:41157730:+	ZFP69B	29792	chr1:40922617:+	INCL_NON_REF_SPLICE	YES	218	475	0.62	0.43	0.035	4.1542	NFYC->chr1:41157320-41237275:+,nuclear_transcription_factor_Y_subunit_gamma,ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+	COLO668_LUNG	0.43	0.62	4.1892	TRUE	0	1	0	1	1	TRUE	ACH-000803
COLO668_LUNG	RLF--RIMS3	80	45	RLF	1264	chr1:40627308:+	RIMS3	18511	chr1:41113514:-	ONLY_REF_SPLICE	YES	622	17	0.17	0.88	0.9335	0.5251	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,RIMS3->chr1:41086351-41131329:-,regulating_synaptic_membrane_exocytosis_3	COLO668_LUNG	0.17	0.88	1.4586	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	MT-ND6--MT-TE	91	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0619	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO668_LUNG	1	1	1.0619	FALSE	499	1288	110	792	0	FALSE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	80	0	RPL14	4486	chr3:40503518:+	AC005540.3	8972	chr2:191745643:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9335	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	1	1	0.9335	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	MT-ND6--MT-TE	73	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8518	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO668_LUNG	1	1	0.8518	FALSE	499	1288	110	792	0	FALSE	ACH-000803
COLO668_LUNG	TIMM23B--LINC00843	49	35	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5718	0.4084	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COLO668_LUNG	1	1	0.9802	TRUE	508	994	45	981	0	FALSE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	50	0	RPL14	4486	chr3:40503518:+	AC005540.3	8975	chr2:191745640:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5834	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	1	1	0.5834	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	MT-TA--MT-TC	46	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5368	0.0467	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO668_LUNG	1	1	0.5835	FALSE	462	80	0	856	0	FALSE	ACH-000803
COLO668_LUNG	RP11-507B12.1--RP11-507B12.2	45	2	RP11-507B12.1	1057	chr15:62007314:-	RP11-507B12.2	6395	chr15:61927688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5251	0.0233	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	COLO668_LUNG	1	1	0.5484	FALSE	0	0	0	4	0	FALSE	ACH-000803
COLO668_LUNG	LINC01014--KCNMB2	40	20	LINC01014	1175	chr3:178137163:+	KCNMB2	9739	chr3:178512930:+	ONLY_REF_SPLICE	YES	6	103	0.91	0.37	0.4668	0.2334	NEIGHBORS_OVERLAP:+:+:[38108],LINC01014->chr3:178136989-178175097:+,long_intergenic_non-protein_coding_RNA_1014,KCNMB2->chr3:177990720-178562217:+,potassium_calcium-activated_channel_subfamily_M_regulatory_beta_subunit_2	COLO668_LUNG	0.37	0.91	0.7002	FALSE	12	33	18	33	0	FALSE	ACH-000803
COLO668_LUNG	EXO5--RP4-739H11.4	28	30	EXO5	3170	chr1:40980306:+	RP4-739H11.4	8292	chr1:41157539:-	INCL_NON_REF_SPLICE	YES	289	131	0.17	0.31	0.3267	0.3501	EXO5->chr1:40974413-40982228:+,exonuclease_5,RP4-739H11.4->chr1:41156052-41157738:-	COLO668_LUNG	0.17	0.31	0.6768	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	EXO5--RP4-739H11.4	24	34	EXO5	4655	chr1:40981791:+	RP4-739H11.4	8292	chr1:41157539:-	INCL_NON_REF_SPLICE	YES	57	131	0.5	0.31	0.2801	0.3967	EXO5->chr1:40974413-40982228:+,exonuclease_5,RP4-739H11.4->chr1:41156052-41157738:-	COLO668_LUNG	0.31	0.5	0.6768	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	MT-ND6--MT-TE	32	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3734	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO668_LUNG	1	1	0.3734	FALSE	499	1288	110	792	0	FALSE	ACH-000803
COLO668_LUNG	TIMM23--RP11-464F9.1	31	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	210	8	0.14	0.8	0.3617	0.0233	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	COLO668_LUNG	0.14	0.8	0.385	TRUE	519	3926	326	965	0	FALSE	ACH-000803
COLO668_LUNG	AP003900.6--FAM230A	27	6	AP003900.6	1122	chr21:11169841:+	FAM230A	9140	chr22:20695279:+	ONLY_REF_SPLICE	YES	2	0	0.94	1	0.3151	0.07	AP003900.6->chr21:11169720-11184046:+,FAM230A->chr22:20692438-20716938:+,family_with_sequence_similarity_230_member_A	COLO668_LUNG	0.94	1	0.3851	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	RP11-141M1.3--STARD13	17	44	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	1	0.97	0.98	0.1984	0.5134	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	COLO668_LUNG	0.97	0.98	0.7118	FALSE	49	120	16	70	0	FALSE	ACH-000803
COLO668_LUNG	RP11-141M1.3--STARD13	17	39	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	9	1	0.86	0.98	0.1984	0.4551	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	COLO668_LUNG	0.86	0.98	0.6535	FALSE	141	264	50	91	0	FALSE	ACH-000803
COLO668_LUNG	CAP1--ZNF684	25	5	CAP1	1569	chr1:40506473:+	ZNF684	19413	chr1:41006258:+	ONLY_REF_SPLICE	YES	10	477	0.75	0.06	0.2917	0.0583	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,ZNF684->chr1:40997233-41013841:+,zinc_finger_protein_684	COLO668_LUNG	0.06	0.75	0.35	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	CAP1--ZMPSTE24	25	2	CAP1	1569	chr1:40506473:+	ZMPSTE24	25837	chr1:40747015:+	ONLY_REF_SPLICE	YES	10	2918	0.73	0.01	0.2917	0.0233	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,ZMPSTE24->chr1:40723779-40759856:+,zinc_metallopeptidase_STE24	COLO668_LUNG	0.01	0.73	0.315	TRUE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	24	4	RPL14	4492	chr3:40503524:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	2616	2	0.01	0.93	0.2801	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0.01	0.93	0.3268	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	MFSD2A--BMP8A	17	30	MFSD2A	1256	chr1:40421057:+	BMP8A	15432	chr1:39976846:+	ONLY_REF_SPLICE	YES	1060	52	0.04	0.47	0.1984	0.3501	MFSD2A->chr1:40420802-40435638:+,major_facilitator_superfamily_domain_containing_2A,BMP8A->bone_morphogenetic_protein_8a,chr1:39957318-39991607:+	COLO668_LUNG	0.04	0.47	0.5485	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	RP4-565E6.1--HYDIN	20	18	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	7	1	0.84	0.2334	0.21	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	COLO668_LUNG	0.84	1	0.4434	TRUE	456	1387	91	133	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND4--MT-ND4L	20	16	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	5	2	0.88	0.95	0.2334	0.1867	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO668_LUNG	0.88	0.95	0.4201	FALSE	344	821	44	306	0	FALSE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	23	4	RPL14	4498	chr3:40503530:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	2506	2	0.01	0.93	0.2684	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0.01	0.93	0.3151	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	MT-TA--MT-TC	23	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2684	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO668_LUNG	1	1	0.2684	FALSE	462	80	0	856	0	FALSE	ACH-000803
COLO668_LUNG	RP11-507B12.1--RP11-507B12.2	22	2	RP11-507B12.1	1057	chr15:62007314:-	RP11-507B12.2	7470	chr15:61882202:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2567	0.0233	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	COLO668_LUNG	1	1	0.28	FALSE	0	23	0	4	0	FALSE	ACH-000803
COLO668_LUNG	NFYC--ZFP69B	2	81	NFYC	1220	chr1:41157539:+	ZFP69B	30191	chr1:40923016:+	ONLY_REF_SPLICE	YES	275	709	0.23	0.1	0.0233	0.9452	NFYC->chr1:41157320-41237275:+,nuclear_transcription_factor_Y_subunit_gamma,ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+	COLO668_LUNG	0.1	0.23	0.9685	TRUE	0	1	0	1	1	TRUE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	21	4	RPL14	4495	chr3:40503527:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	2530	2	0.01	0.93	0.245	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0.01	0.93	0.2917	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	MT-ND4--MT-ND4L	20	1	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	74	0	0.22	1	0.2334	0.0117	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO668_LUNG	0.22	1	0.2451	FALSE	344	827	44	306	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND6--MT-TE	20	0	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2334	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO668_LUNG	1	1	0.2334	FALSE	499	1288	110	792	0	FALSE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	19	4	RPL14	4487	chr3:40503519:+	AC005540.3	8967	chr2:191745648:-	INCL_NON_REF_SPLICE	YES	3108	2	0.01	0.92	0.2217	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0.01	0.92	0.2684	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	C15orf57--CBX3	14	19	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	99	58	0.25	0.36	0.1634	0.2217	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COLO668_LUNG	0.25	0.36	0.3851	TRUE	267	562	48	632	0	FALSE	ACH-000803
COLO668_LUNG	RP11-680G10.1--GSE1	17	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	98	1	0.2	0.1984	0.0817	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COLO668_LUNG	0.2	1	0.2801	TRUE	465	1949	224	605	0	FALSE	ACH-000803
COLO668_LUNG	ZNF654--HMGB2	18	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.21	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	COLO668_LUNG	1	1	0.21	TRUE	0	0	0	518	0	FALSE	ACH-000803
COLO668_LUNG	RLF--RIMS3	9	27	RLF	1264	chr1:40627308:+	RIMS3	18591	chr1:41113434:-	ONLY_REF_SPLICE	YES	622	30	0.05	0.55	0.105	0.3151	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,RIMS3->chr1:41086351-41131329:-,regulating_synaptic_membrane_exocytosis_3	COLO668_LUNG	0.05	0.55	0.4201	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	ZNF684--RP4-739H11.3	12	13	ZNF684	2266	chr1:40998853:+	RP4-739H11.3	11627	chr1:41153274:-	INCL_NON_REF_SPLICE	YES	480	0	0.05	1	0.14	0.1517	ZNF684->chr1:40997233-41013841:+,zinc_finger_protein_684,RP4-739H11.3->chr1:41134761-41153260:-	COLO668_LUNG	0.05	1	0.2917	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	14	4	RPL14	4485	chr3:40503517:+	AC005540.3	8959	chr2:191745656:-	INCL_NON_REF_SPLICE	YES	3096	2	0.01	0.9	0.1634	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0.01	0.9	0.2101	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	MT-ND4--MT-ND4L	6	33	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	17	0	0.7	1	0.07	0.3851	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO668_LUNG	0.7	1	0.4551	FALSE	344	826	44	306	0	FALSE	ACH-000803
COLO668_LUNG	MT-TA--MT-TC	13	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1517	0.0467	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO668_LUNG	1	1	0.1984	FALSE	462	80	0	856	0	FALSE	ACH-000803
COLO668_LUNG	RLF--RIMS3	2	47	RLF	3501	chr1:40656525:+	RIMS3	18511	chr1:41113514:-	ONLY_REF_SPLICE	YES	658	17	0.07	0.74	0.0233	0.5484	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,RIMS3->chr1:41086351-41131329:-,regulating_synaptic_membrane_exocytosis_3	COLO668_LUNG	0.07	0.74	0.5717	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	RLF--RIMS3	1	48	RLF	5837	chr1:40668286:+	RIMS3	18511	chr1:41113514:-	ONLY_REF_SPLICE	YES	579	17	0.08	0.74	0.0117	0.5601	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,RIMS3->chr1:41086351-41131329:-,regulating_synaptic_membrane_exocytosis_3	COLO668_LUNG	0.08	0.74	0.5718	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	12	4	RPL14	4501	chr3:40503533:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	2464	2	0.01	0.89	0.14	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0.01	0.89	0.1867	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.14	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	COLO668_LUNG	1	1	0.14	TRUE	46	1352	75	139	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND4--MT-ND4L	4	31	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	15	1	0.7	0.97	0.0467	0.3617	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO668_LUNG	0.7	0.97	0.4084	FALSE	344	826	44	306	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND4--MT-ND4L	10	7	MT-ND4	1447	chrM:11206:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	407	0	0.04	1	0.1167	0.0817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO668_LUNG	0.04	1	0.1984	FALSE	344	827	44	306	0	FALSE	ACH-000803
COLO668_LUNG	RP11-123O10.4--GRIP1	9	11	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.105	0.1284	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO668_LUNG	1	1	0.2334	FALSE	416	2512	207	587	0	FALSE	ACH-000803
COLO668_LUNG	RP11-680G10.1--GSE1	9	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	14	1	0.58	0.105	0.1167	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COLO668_LUNG	0.58	1	0.2217	TRUE	458	1351	185	561	0	FALSE	ACH-000803
COLO668_LUNG	RP11-120D5.1--MID1	9	9	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	8	77	0.69	0.19	0.105	0.105	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	COLO668_LUNG	0.19	0.69	0.21	FALSE	16	356	14	466	0	FALSE	ACH-000803
COLO668_LUNG	MT-CO3--MT-ATP6	10	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	9	0	0.57	1	0.1167	0.0233	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO668_LUNG	0.57	1	0.14	FALSE	189	492	56	216	0	FALSE	ACH-000803
COLO668_LUNG	CAP1--ZNF684	9	5	CAP1	1551	chr1:40506455:+	ZNF684	19413	chr1:41006258:+	ONLY_REF_SPLICE	YES	9	477	0.61	0.03	0.105	0.0583	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,ZNF684->chr1:40997233-41013841:+,zinc_finger_protein_684	COLO668_LUNG	0.03	0.61	0.1633	TRUE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	MFSD2A--BMP8A	3	28	MFSD2A	1250	chr1:40421051:+	BMP8A	15432	chr1:39976846:+	ONLY_REF_SPLICE	YES	997	52	0.03	0.37	0.035	0.3267	MFSD2A->chr1:40420802-40435638:+,major_facilitator_superfamily_domain_containing_2A,BMP8A->bone_morphogenetic_protein_8a,chr1:39957318-39991607:+	COLO668_LUNG	0.03	0.37	0.3617	TRUE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND4--MT-ND4L	3	25	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	7	2	0.8	0.93	0.035	0.2917	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO668_LUNG	0.8	0.93	0.3267	FALSE	344	826	44	306	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND6--MT-TE	9	0	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.105	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO668_LUNG	1	1	0.105	FALSE	499	1288	110	792	0	FALSE	ACH-000803
COLO668_LUNG	C15orf57--CBX3	6	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	98	59	0.14	0.21	0.07	0.1167	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COLO668_LUNG	0.14	0.21	0.1867	TRUE	267	562	48	632	0	FALSE	ACH-000803
COLO668_LUNG	RP11-1L12.3--SLC5A12	7	5	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	15	0	0.44	1	0.0817	0.0583	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	COLO668_LUNG	0.44	1	0.14	TRUE	3	101	0	60	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND6--MT-TE	8	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0934	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO668_LUNG	1	1	0.0934	FALSE	499	1288	110	792	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND6--MT-TE	8	0	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0934	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO668_LUNG	1	1	0.0934	FALSE	499	1288	110	792	0	FALSE	ACH-000803
COLO668_LUNG	AP003900.6--FAM230A	7	3	AP003900.6	1122	chr21:11169841:+	FAM230A	11779	chr22:20703776:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0817	0.035	AP003900.6->chr21:11169720-11184046:+,FAM230A->chr22:20692438-20716938:+,family_with_sequence_similarity_230_member_A	COLO668_LUNG	0.83	1	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	MAF--RP11-679B19.2	6	7	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.07	0.0817	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	COLO668_LUNG	1	1	0.1517	TRUE	48	25	3	38	0	FALSE	ACH-000803
COLO668_LUNG	CAP1--ZMPSTE24	7	2	CAP1	1551	chr1:40506455:+	ZMPSTE24	25837	chr1:40747015:+	ONLY_REF_SPLICE	YES	9	2918	0.5	0	0.0817	0.0233	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,ZMPSTE24->chr1:40723779-40759856:+,zinc_metallopeptidase_STE24	COLO668_LUNG	0	0.5	0.105	TRUE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	MT-CO3--MT-ATP6	7	2	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	13	0	0.41	1	0.0817	0.0233	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO668_LUNG	0.41	1	0.105	FALSE	189	492	56	216	0	FALSE	ACH-000803
COLO668_LUNG	AP003900.6--FAM230A	6	4	AP003900.6	1122	chr21:11169841:+	FAM230A	10692	chr22:20698777:+	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.07	0.0467	AP003900.6->chr21:11169720-11184046:+,FAM230A->chr22:20692438-20716938:+,family_with_sequence_similarity_230_member_A	COLO668_LUNG	0.83	1	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	MT-ATP6--MT-CO1	7	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0817	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO668_LUNG	1	1	0.0817	FALSE	183	104	9	328	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND4--MT-ND4L	7	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0817	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO668_LUNG	1	1	0.0817	FALSE	344	821	44	306	0	FALSE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	6	4	RPL14	4476	chr3:40503508:+	AC005540.3	8959	chr2:191745656:-	INCL_NON_REF_SPLICE	YES	3065	2	0	0.83	0.07	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0	0.83	0.1167	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	ZNF684--PPIE	4	12	ZNF684	2266	chr1:40998853:+	PPIE	15492	chr1:40205837:+	ONLY_REF_SPLICE	YES	480	8	0.03	0.67	0.0467	0.14	ZNF684->chr1:40997233-41013841:+,zinc_finger_protein_684,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	COLO668_LUNG	0.03	0.67	0.1867	TRUE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	AP003900.6--FAM230A	4	11	AP003900.6	3299	chr21:11174002:+	FAM230A	9140	chr22:20695279:+	ONLY_REF_SPLICE	YES	14	0	0.52	1	0.0467	0.1284	AP003900.6->chr21:11169720-11184046:+,FAM230A->chr22:20692438-20716938:+,family_with_sequence_similarity_230_member_A	COLO668_LUNG	0.52	1	0.1751	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	CAP1--ZMPSTE24	6	3	CAP1	2261	chr1:40507165:+	ZMPSTE24	25837	chr1:40747015:+	ONLY_REF_SPLICE	YES	44	2918	0.17	0	0.07	0.035	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,ZMPSTE24->chr1:40723779-40759856:+,zinc_metallopeptidase_STE24	COLO668_LUNG	0	0.17	0.105	TRUE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND4--MT-ND4L	5	7	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	65	0	0.16	1	0.0583	0.0817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO668_LUNG	0.16	1	0.14	FALSE	344	827	44	306	0	FALSE	ACH-000803
COLO668_LUNG	RP11-319G9.5--WWOX	6	3	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	98	1	0.08	0.07	0.035	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	COLO668_LUNG	0.08	1	0.105	FALSE	154	425	28	76	0	FALSE	ACH-000803
COLO668_LUNG	EXO5--RP4-739H11.4	5	6	EXO5	1847	chr1:40975259:+	RP4-739H11.4	8292	chr1:41157539:-	INCL_NON_REF_SPLICE	YES	327	131	0.03	0.08	0.0583	0.07	EXO5->chr1:40974413-40982228:+,exonuclease_5,RP4-739H11.4->chr1:41156052-41157738:-	COLO668_LUNG	0.03	0.08	0.1283	TRUE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	MT-CO3--MT-ATP6	6	1	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	2	0.88	0.78	0.07	0.0117	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO668_LUNG	0.78	0.88	0.0817	FALSE	189	492	56	216	0	FALSE	ACH-000803
COLO668_LUNG	NFYC--ZFP69B	1	21	NFYC	1220	chr1:41157539:+	ZFP69B	31287	chr1:40928093:+	ONLY_REF_SPLICE	YES	275	1035	0.07	0.02	0.0117	0.245	NFYC->chr1:41157320-41237275:+,nuclear_transcription_factor_Y_subunit_gamma,ZFP69B->ZFP69_zinc_finger_protein_B,chr1:40915774-40929390:+	COLO668_LUNG	0.02	0.07	0.2567	TRUE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	RP11-96H19.1--RP11-446N19.1	4	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0467	0.105	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO668_LUNG	1	1	0.1517	FALSE	515	4851	409	746	0	FALSE	ACH-000803
COLO668_LUNG	MT-ATP6--MT-CO1	6	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.07	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO668_LUNG	1	1	0.07	FALSE	183	104	9	328	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.07	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO668_LUNG	1	1	0.07	FALSE	499	1288	110	792	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.07	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO668_LUNG	1	1	0.07	FALSE	499	1288	110	792	0	FALSE	ACH-000803
COLO668_LUNG	MT-TA--MT-TC	5	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0.0467	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO668_LUNG	1	1	0.105	FALSE	462	80	0	856	0	FALSE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	6	0	RPL14	4486	chr3:40503518:+	AC005540.3	8978	chr2:191745637:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.07	0	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	1	1	0.07	TRUE	1	3	0	5	3	TRUE	ACH-000803
COLO668_LUNG	MT-ND4--MT-ND4L	4	7	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	939	0	0.01	1	0.0467	0.0817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO668_LUNG	0.01	1	0.1284	FALSE	344	827	44	306	0	FALSE	ACH-000803
COLO668_LUNG	RLF--RIMS3	2	15	RLF	1264	chr1:40627308:+	RIMS3	19686	chr1:41107628:-	ONLY_REF_SPLICE	YES	622	71	0.03	0.19	0.0233	0.175	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,RIMS3->chr1:41086351-41131329:-,regulating_synaptic_membrane_exocytosis_3	COLO668_LUNG	0.03	0.19	0.1983	TRUE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	AP003900.6--FAM230A	4	6	AP003900.6	3299	chr21:11174002:+	FAM230A	11779	chr22:20703776:+	ONLY_REF_SPLICE	YES	14	0	0.42	1	0.0467	0.07	AP003900.6->chr21:11169720-11184046:+,FAM230A->chr22:20692438-20716938:+,family_with_sequence_similarity_230_member_A	COLO668_LUNG	0.42	1	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	NRIP1--AF127936.7	5	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.78	1	0.0583	0.0233	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO668_LUNG	0.78	1	0.0816	FALSE	292	1546	117	613	0	FALSE	ACH-000803
COLO668_LUNG	ZNF684--PPIE	1	18	ZNF684	2266	chr1:40998853:+	PPIE	13048	chr1:40201140:+	ONLY_REF_SPLICE	NO	480	0	0.04	1	0.0117	0.21	ZNF684->chr1:40997233-41013841:+,zinc_finger_protein_684,PPIE->chr1:40157854-40229586:+,peptidylprolyl_isomerase_E	COLO668_LUNG	0.04	1	0.2217	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	MT-CO3--MT-ATP6	4	5	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	7	12	0.56	0.43	0.0467	0.0583	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO668_LUNG	0.43	0.56	0.105	FALSE	189	492	56	216	0	FALSE	ACH-000803
COLO668_LUNG	RLF--RIMS3	1	17	RLF	6974	chr1:40688382:+	RIMS3	19686	chr1:41107628:-	ONLY_REF_SPLICE	YES	652	71	0.03	0.2	0.0117	0.1984	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,RIMS3->chr1:41086351-41131329:-,regulating_synaptic_membrane_exocytosis_3	COLO668_LUNG	0.03	0.2	0.2101	TRUE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	MT-CO3--MT-ATP6	3	8	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	14	65	0.44	0.14	0.035	0.0934	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO668_LUNG	0.14	0.44	0.1284	FALSE	189	492	56	216	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO668_LUNG	1	1	0.0583	FALSE	499	1288	110	792	0	FALSE	ACH-000803
COLO668_LUNG	NRIP1--AF127936.7	4	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.32	1	0.0467	0.0467	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO668_LUNG	0.32	1	0.0934	FALSE	125	705	46	456	0	FALSE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	4	4	RPL14	4504	chr3:40503536:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	2452	2	0	0.8	0.0467	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0	0.8	0.0934	FALSE	1	3	0	5	3	FALSE	ACH-000803
COLO668_LUNG	RPL14--AC005540.3	4	4	RPL14	4507	chr3:40503539:+	AC005540.3	8969	chr2:191745646:-	INCL_NON_REF_SPLICE	YES	2478	2	0	0.8	0.0467	0.0467	RPL14->chr3:40498783-40503861:+,ribosomal_protein_L14,AC005540.3->chr2:191745523-191746785:-	COLO668_LUNG	0	0.8	0.0934	FALSE	1	3	0	5	3	FALSE	ACH-000803
COLO668_LUNG	CAP1--ZNF684	3	7	CAP1	2261	chr1:40507165:+	ZNF684	19413	chr1:41006258:+	ONLY_REF_SPLICE	YES	44	477	0.19	0.02	0.035	0.0817	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,ZNF684->chr1:40997233-41013841:+,zinc_finger_protein_684	COLO668_LUNG	0.02	0.19	0.1167	TRUE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND4--MT-ND4L	3	7	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	74	0	0.12	1	0.035	0.0817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO668_LUNG	0.12	1	0.1167	FALSE	344	827	44	306	0	FALSE	ACH-000803
COLO668_LUNG	ZNF684--RP4-739H11.3	3	7	ZNF684	2266	chr1:40998853:+	RP4-739H11.3	12705	chr1:41147222:-	ONLY_REF_SPLICE	YES	480	0	0.02	1	0.035	0.0817	ZNF684->chr1:40997233-41013841:+,zinc_finger_protein_684,RP4-739H11.3->chr1:41134761-41153260:-	COLO668_LUNG	0.02	1	0.1167	TRUE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	GNGT1--AC002076.10	3	6	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	14	0	0.39	1	0.035	0.07	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	COLO668_LUNG	0.39	1	0.105	FALSE	0	10	0	30	0	FALSE	ACH-000803
COLO668_LUNG	MT-CO3--MT-ATP6	3	6	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	6	73	0.6	0.11	0.035	0.07	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO668_LUNG	0.11	0.6	0.105	FALSE	189	492	56	216	0	FALSE	ACH-000803
COLO668_LUNG	MT-CO3--MT-ATP6	3	5	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	15	11	0.35	0.42	0.035	0.0583	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO668_LUNG	0.35	0.42	0.0933	FALSE	189	492	56	216	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND4--MT-ND4L	4	1	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	32	0	0.14	1	0.0467	0.0117	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO668_LUNG	0.14	1	0.0584	FALSE	344	826	44	306	0	FALSE	ACH-000803
COLO668_LUNG	RP11-96H19.1--RP11-446N19.1	2	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0.105	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO668_LUNG	1	1	0.1283	FALSE	407	2205	196	549	0	FALSE	ACH-000803
COLO668_LUNG	IFNAR2--RBFA	4	0	IFNAR2	4961	chr21:34617379:+	RBFA	23088	chr18:77801910:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0467	0	IFNAR2->chr21:34602206-34637980:+,interferon_alpha_and_beta_receptor_subunit_2,RBFA->chr18:77794358-77806397:+,ribosome_binding_factor_A_(putative)	COLO668_LUNG	1	1	0.0467	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0467	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO668_LUNG	1	1	0.0467	FALSE	183	104	9	328	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0467	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO668_LUNG	1	1	0.0467	FALSE	499	1288	110	792	0	FALSE	ACH-000803
COLO668_LUNG	EXO5--RP4-739H11.4	3	3	EXO5	1739	chr1:40975151:+	RP4-739H11.4	8292	chr1:41157539:-	INCL_NON_REF_SPLICE	YES	303	131	0.02	0.04	0.035	0.035	EXO5->chr1:40974413-40982228:+,exonuclease_5,RP4-739H11.4->chr1:41156052-41157738:-	COLO668_LUNG	0.02	0.04	0.07	TRUE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	MT-CO3--MT-ATP6	3	3	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	0	12	1	0.33	0.035	0.035	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO668_LUNG	0.33	1	0.07	FALSE	189	492	56	216	0	FALSE	ACH-000803
COLO668_LUNG	CAP1--ZMPSTE24	3	2	CAP1	1569	chr1:40506473:+	ZMPSTE24	25859	chr1:40747037:+	INCL_NON_REF_SPLICE	YES	10	2740	0.33	0	0.035	0.0233	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,ZMPSTE24->chr1:40723779-40759856:+,zinc_metallopeptidase_STE24	COLO668_LUNG	0	0.33	0.0583	FALSE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	GNGT1--AC002076.10	2	5	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	11	0	0.39	1	0.0233	0.0583	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	COLO668_LUNG	0.39	1	0.0816	FALSE	0	28	0	37	0	FALSE	ACH-000803
COLO668_LUNG	MT-CO3--MT-ATP6	3	1	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	13	0	0.24	1	0.035	0.0117	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO668_LUNG	0.24	1	0.0467	FALSE	189	492	56	216	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND6--MT-TE	3	1	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.8	1	0.035	0.0117	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO668_LUNG	0.8	1	0.0467	FALSE	499	1288	110	792	0	FALSE	ACH-000803
COLO668_LUNG	MT-TA--MT-TC	3	1	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0.0117	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO668_LUNG	1	1	0.0467	FALSE	462	80	0	856	0	FALSE	ACH-000803
COLO668_LUNG	RP11-120D5.1--MID1	2	5	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	11	77	0.39	0.08	0.0233	0.0583	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	COLO668_LUNG	0.08	0.39	0.0816	FALSE	0	48	1	163	0	FALSE	ACH-000803
COLO668_LUNG	RP11-123O10.4--GRIP1	2	5	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.88	0.0233	0.0583	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO668_LUNG	0.88	1	0.0816	FALSE	93	270	15	244	0	FALSE	ACH-000803
COLO668_LUNG	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0117	0.105	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO668_LUNG	1	1	0.1167	FALSE	467	2173	244	435	0	FALSE	ACH-000803
COLO668_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	COLO668_LUNG	1	1	0.035	FALSE	183	104	9	328	0	FALSE	ACH-000803
COLO668_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	COLO668_LUNG	1	1	0.035	FALSE	189	492	56	216	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1059	chrM:10818:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO668_LUNG	1	1	0.035	FALSE	344	821	44	306	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO668_LUNG	1	1	0.035	FALSE	499	1288	110	792	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO668_LUNG	1	1	0.035	FALSE	499	1288	110	792	0	FALSE	ACH-000803
COLO668_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.035	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	COLO668_LUNG	1	1	0.035	FALSE	499	1288	110	792	0	FALSE	ACH-000803
COLO668_LUNG	CCDC122--ENOX1	2	3	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	88	35	0.05	0.12	0.0233	0.035	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	COLO668_LUNG	0.05	0.12	0.0583	FALSE	39	52	2	34	0	FALSE	ACH-000803
COLO668_LUNG	RLF--RIMS3	2	3	RLF	1264	chr1:40627308:+	RIMS3	23189	chr1:41095044:-	ONLY_REF_SPLICE	YES	622	83	0.01	0.06	0.0233	0.035	RLF->Oncogene{Bushman},chr1:40627045-40706593:+,rearranged_L-myc_fusion,RIMS3->chr1:41086351-41131329:-,regulating_synaptic_membrane_exocytosis_3	COLO668_LUNG	0.01	0.06	0.0583	FALSE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	CPSF6--C9orf3	1	6	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	316	498	0.02	0.01	0.0117	0.07	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	COLO668_LUNG	0.01	0.02	0.0817	FALSE	53	99	2	44	0	FALSE	ACH-000803
COLO668_LUNG	RP11-108K3.1--GLDN	2	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	17	1	0.19	0.0233	0.0233	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	COLO668_LUNG	0.19	1	0.0466	FALSE	0	30	1	55	0	FALSE	ACH-000803
COLO668_LUNG	RP11-507B12.1--RP11-507B12.2	2	2	RP11-507B12.1	1057	chr15:62007314:-	RP11-507B12.2	8558	chr15:61799439:-	ONLY_REF_SPLICE	YES	0	17	1	0.19	0.0233	0.0233	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	COLO668_LUNG	0.19	1	0.0466	FALSE	0	11	0	4	0	FALSE	ACH-000803
COLO668_LUNG	RP4-565E6.1--HYDIN	1	6	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	25	1	0.22	0.0117	0.07	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	COLO668_LUNG	0.22	1	0.0817	TRUE	84	87	4	41	0	FALSE	ACH-000803
COLO668_LUNG	RB1--ITM2B	2	1	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	66	678	0.04	0	0.0233	0.0117	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	COLO668_LUNG	0	0.04	0.035	FALSE	53	73	8	19	0	FALSE	ACH-000803
COLO668_LUNG	SAMD5--SASH1	2	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	5	3	0.38	0.5	0.0233	0.0117	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	COLO668_LUNG	0.38	0.5	0.035	TRUE	53	396	64	110	0	FALSE	ACH-000803
COLO668_LUNG	AC073283.4--ADAM17	2	0	AC073283.4	1174	chr2:47572040:-	ADAM17	25726	chr2:9650260:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	AC073283.4->chr2:47419544-47572213:-,ADAM17->ADAM_metallopeptidase_domain_17,chr2:9628615-9695921:-	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	ADAM10--DFNB31	2	0	ADAM10	16025	chr15:58925514:-	DFNB31	35875	chr9:117228672:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ADAM10->ADAM_metallopeptidase_domain_10,chr15:58887403-59042177:-,DFNB31->chr9:117164360-117267730:-,deafness,_autosomal_recessive_31	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	AGPAT3--TNK2	2	0	AGPAT3	14510	chr21:45379740:+	TNK2	41335	chr3:195615477:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx&tcga_normals:1/3694=0.03%,AGPAT3->1-acylglycerol-3-phosphate_O-acyltransferase_3,chr21:45285067-45406417:+,TNK2->chr3:195590235-195638816:-,tyrosine_kinase_non_receptor_2	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	ATXN2--NUP98	2	0	ATXN2	17370	chr12:111947353:-	NUP98	60701	chr11:3727857:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	ATXN2->ataxin_2,chr12:111890018-112037480:-,NUP98->Oncogene{Bushman},chr11:3692313-3819022:-,nucleoporin_98kDa	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	CALCA--TPD52	2	0	CALCA	4479	chr11:14990372:-	TPD52	27038	chr8:80956443:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CALCA->Oncogene{Bushman},calcitonin_related_polypeptide_alpha,chr11:14988214-14993900:-,TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	CAP1--ZMPSTE24	2	0	CAP1	1551	chr1:40506455:+	ZMPSTE24	27022	chr1:40751597:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,ZMPSTE24->chr1:40723779-40759856:+,zinc_metallopeptidase_STE24	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	CEP170--SDCCAG8	2	0	CEP170	5453	chr1:243385026:-	SDCCAG8	50643	chr1:243493842:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Artery_-_Coronary=1,Nerve_-_Tibial=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_INVERSION:-:+:[670],CEP170->centrosomal_protein_170,chr1:243287730-243418650:-,SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8	COLO668_LUNG	1	1	0.0233	TRUE	0	1	0	1	1	TRUE	ACH-000803
COLO668_LUNG	COG5--TIPARP	2	0	COG5	7293	chr7:107167682:-	TIPARP	43867	chr3:156421213:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	COG5->chr7:106842000-107204959:-,component_of_oligomeric_golgi_complex_5,TIPARP->TCDD_inducible_poly(ADP-ribose)_polymerase,chr3:156391024-156424559:+	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	COX7A2L--LPIN1	2	0	COX7A2L	8717	chr2:42588230:-	LPIN1	28825	chr2:11905659:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	COX7A2L->chr2:42560686-42652228:-,cytochrome_c_oxidase_subunit_7A2_like,LPIN1->chr2:11817721-11967535:+,lipin_1	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	COLO668_LUNG	1	1	0.0233	TRUE	347	1186	183	220	0	FALSE	ACH-000803
COLO668_LUNG	JAZF1--MEOX2	2	0	JAZF1	1281	chr7:28220082:-	MEOX2	20061	chr7:15666543:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	JAZF1->JAZF_zinc_finger_1,Oncogene{Bushman},chr7:27870192-28220362:-,MEOX2->chr7:15650837-15726437:-,mesenchyme_homeobox_2	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	OPHN1--IDS	2	0	OPHN1	6301	chrX:67494580:-	IDS	57351	chrX:148564749:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	OPHN1->chrX:67262186-67653755:-,oligophrenin_1,IDS->chrX:148558521-148615470:-,chrX:148564074-148615470:-,iduronate_2-sulfatase	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	PAFAH1B1--METTL16	2	0	PAFAH1B1	1797	chr17:2497300:+	METTL16	26041	chr17:2405625:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	LOCAL_INVERSION:+:-:[81319],PAFAH1B1->chr17:2496504-2588909:+,platelet_activating_factor_acetylhydrolase_1b_regulatory_subunit_1,METTL16->chr17:2308856-2415185:-,methyltransferase_like_16	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	PTDSS1--SLC20A1	2	0	PTDSS1	8974	chr8:97316409:+	SLC20A1	25314	chr2:113410279:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	PTDSS1->chr8:97273943-97349223:+,phosphatidylserine_synthase_1,SLC20A1->chr2:113403434-113421404:+,solute_carrier_family_20_member_1	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	SEC11C--RIF1	2	0	SEC11C	7744	chr18:56823039:+	RIF1	37850	chr2:152315325:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	SEC11C->SEC11_homolog_C,_signal_peptidase_complex_subunit,chr18:56806709-56826068:+,RIF1->chr2:152266397-152364527:+,replication_timing_regulatory_factor_1	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	SREBF2--NHP2L1	2	0	SREBF2	1254	chr22:42229362:+	NHP2L1	34900	chr22:42076368:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,NHP2L1->chr22:42069934-42086508:-	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	STK33--PRMT3	2	0	STK33	25637	chr11:8435042:-	PRMT3	47242	chr11:20515465:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	STK33->chr11:8413418-8615836:-,serine/threonine_kinase_33,PRMT3->chr11:20409076-20530840:+,protein_arginine_methyltransferase_3	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	TTC17--HSD17B12	2	0	TTC17	16765	chr11:43436326:+	HSD17B12	55374	chr11:43836987:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	NEIGHBORS[61503],TTC17->chr11:43380482-43516483:+,tetratricopeptide_repeat_domain_17,HSD17B12->chr11:43577986-43878167:+,hydroxysteroid_(17-beta)_dehydrogenase_12	COLO668_LUNG	1	1	0.0233	FALSE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	TUBGCP3--CUL4A	2	0	TUBGCP3	1263	chr13:113242219:-	CUL4A	32253	chr13:113873259:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Left_Ventricle=1},TUBGCP3->chr13:113139325-113242481:-,tubulin_gamma_complex_associated_protein_3,CUL4A->chr13:113862552-113919399:+,cullin_4A	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	UBQLN1--GKAP1	2	0	UBQLN1	1704	chr9:86322415:-	GKAP1	31396	chr9:86368274:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[31218],UBQLN1->chr9:86274878-86323118:-,ubiquilin_1,GKAP1->G_kinase_anchoring_protein_1,chr9:86354336-86444431:-	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	2	0	TRUE	ACH-000803
COLO668_LUNG	VAV2--EHMT1	2	0	VAV2	1530	chr9:136857197:-	EHMT1	57187	chr9:140674087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	VAV2->Oncogene{Bushman},chr9:136627016-136857726:-,vav_guanine_nucleotide_exchange_factor_2,EHMT1->Oncogene{Bushman},chr9:140513444-140764468:+,euchromatic_histone-lysine_N-methyltransferase_1	COLO668_LUNG	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000803
COLO668_LUNG	RP11-108K3.1--GLDN	1	3	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	0	20	1	0.17	0.0117	0.035	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	COLO668_LUNG	0.17	1	0.0467	FALSE	0	14	0	30	0	FALSE	ACH-000803
COLO668_LUNG	CAP1--ZNF684	1	2	CAP1	1569	chr1:40506473:+	ZNF684	20442	chr1:41007287:+	ONLY_REF_SPLICE	YES	10	477	0.23	0.01	0.0117	0.0233	CAP1->CAP,_adenylate_cyclase-associated_protein_1_(yeast),chr1:40505905-40538321:+,ZNF684->chr1:40997233-41013841:+,zinc_finger_protein_684	COLO668_LUNG	0.01	0.23	0.035	FALSE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	RP11-108K3.1--GLDN	1	2	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	0	20	1	0.13	0.0117	0.0233	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	COLO668_LUNG	0.13	1	0.035	FALSE	1	20	0	46	0	FALSE	ACH-000803
COLO668_LUNG	RP11-507B12.1--RP11-507B12.2	1	2	RP11-507B12.1	1057	chr15:62007314:-	RP11-507B12.2	9621	chr15:61692630:-	ONLY_REF_SPLICE	YES	0	18	1	0.14	0.0117	0.0233	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	COLO668_LUNG	0.14	1	0.035	FALSE	0	8	0	2	0	FALSE	ACH-000803
COLO668_LUNG	RP11-507B12.1--RP11-507B12.2	1	2	RP11-507B12.1	2070	chr15:61945388:-	RP11-507B12.2	9621	chr15:61692630:-	ONLY_REF_SPLICE	YES	0	18	1	0.14	0.0117	0.0233	NEIGHBORS[3900],RP11-507B12.1->chr15:61931548-62007370:-,RP11-507B12.2->chr15:61592525-61927648:-	COLO668_LUNG	0.14	1	0.035	FALSE	0	2	0	1	0	FALSE	ACH-000803
COLO668_LUNG	RP11-586L23.1--RNF150	1	2	RP11-586L23.1	2446	chr4:142195495:-	RNF150	10260	chr4:141974885:-	ONLY_REF_SPLICE	NO	0	11	1	0.21	0.0117	0.0233	NEIGHBORS[27862],RP11-586L23.1->chr4:142161893-142199943:-,RNF150->chr4:141780961-142134031:-,ring_finger_protein_150	COLO668_LUNG	0.21	1	0.035	FALSE	0	0	0	2	0	FALSE	ACH-000803
COLO668_LUNG	ADCYAP1--RP11-78F17.1	1	1	ADCYAP1	2794	chr18:907791:+	RP11-78F17.1	13815	chr18:1133844:+	ONLY_REF_SPLICE	YES	47	0	0.04	1	0.0117	0.0117	NEIGHBORS[64417],ADCYAP1->adenylate_cyclase_activating_polypeptide_1,chr18:904944-912173:+,RP11-78F17.1->chr18:976590-1174824:+	COLO668_LUNG	0.04	1	0.0234	FALSE	0	4	0	2	0	FALSE	ACH-000803
COLO668_LUNG	ADCYAP1--RP11-78F17.1	1	1	ADCYAP1	3367	chr18:908364:+	RP11-78F17.1	11402	chr18:1061464:+	ONLY_REF_SPLICE	YES	301	0	0.01	1	0.0117	0.0117	NEIGHBORS[64417],ADCYAP1->adenylate_cyclase_activating_polypeptide_1,chr18:904944-912173:+,RP11-78F17.1->chr18:976590-1174824:+	COLO668_LUNG	0.01	1	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	CD46--HNRNPDL	1	1	CD46	6873	chr1:207940540:+	HNRNPDL	25816	chr4:83346036:-	ONLY_REF_SPLICE	YES	622	1019	0	0	0.0117	0.0117	CD46->CD46_molecule,Oncogene{Bushman},chr1:207925402-207968858:+,HNRNPDL->chr4:83343717-83351294:-,heterogeneous_nuclear_ribonucleoprotein_D_like	COLO668_LUNG	0	0	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	FAM168B--YTHDC1	1	1	FAM168B	3412	chr2:131829428:-	YTHDC1	22363	chr4:69189941:-	ONLY_REF_SPLICE	YES	259	284	0.01	0.01	0.0117	0.0117	FAM168B->chr2:131805449-131851033:-,family_with_sequence_similarity_168_member_B,YTHDC1->YTH_domain_containing_1,chr4:69176105-69215807:-	COLO668_LUNG	0.01	0.01	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	FBXW7--ZNF330	1	1	FBXW7	7513	chr4:153303341:-	ZNF330	33048	chr4:142150725:+	ONLY_REF_SPLICE	YES	109	259	0.02	0.01	0.0117	0.0117	FBXW7->ArcherDX_panel,F-box_and_WD_repeat_domain_containing_7,FoundationOne_panel,Oncogene{Bushman},chr4:153242410-153457253:-,ZNF330->chr4:142142041-142155851:+,zinc_finger_protein_330	COLO668_LUNG	0.01	0.02	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	HOXD-AS2--MTX2	1	1	HOXD-AS2	2582	chr2:177000047:-	MTX2	10155	chr2:177161588:+	ONLY_REF_SPLICE	YES	3	354	0.4	0.01	0.0117	0.0117	GTEx_FI:{Blood_Vessel=[count:2=pct:0.5]},HOXD-AS2->HOXD_cluster_antisense_RNA_2,chr2:176986339-177001826:-,MTX2->chr2:177134123-177202753:+,metaxin_2	COLO668_LUNG	0.01	0.4	0.0234	FALSE	2	4	0	1	0	FALSE	ACH-000803
COLO668_LUNG	INIP--HSDL2	1	1	INIP	2331	chr9:115478741:-	HSDL2	21284	chr9:115200711:+	ONLY_REF_SPLICE	NO	162	172	0.01	0.01	0.0117	0.0117	INIP->INTS3_and_NABP_interacting_protein,chr9:115446206-115480516:-,HSDL2->chr9:115142217-115234690:+,hydroxysteroid_dehydrogenase_like_2	COLO668_LUNG	0.01	0.01	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	MBNL1--PDCD10	1	1	MBNL1	3666	chr3:151986881:+	PDCD10	32099	chr3:167438061:-	ONLY_REF_SPLICE	YES	101	304	0.02	0.01	0.0117	0.0117	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,PDCD10->chr3:167401086-167452727:-,programmed_cell_death_10	COLO668_LUNG	0.01	0.02	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000803
COLO668_LUNG	MINOS1--CAPZB	1	1	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	204	86	0.01	0.02	0.0117	0.0117	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	COLO668_LUNG	0.01	0.02	0.0234	FALSE	2	7	0	21	0	FALSE	ACH-000803
COLO668_LUNG	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	18197	chr21:16225752:-	ONLY_REF_SPLICE	NO	29	10	0.06	0.17	0.0117	0.0117	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO668_LUNG	0.06	0.17	0.0234	FALSE	0	1	0	3	0	FALSE	ACH-000803
COLO668_LUNG	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	17	11	0.11	0.15	0.0117	0.0117	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO668_LUNG	0.11	0.15	0.0234	FALSE	7	44	2	41	0	FALSE	ACH-000803
COLO668_LUNG	NT5DC1--YLPM1	1	1	NT5DC1	6611	chr6:116439108:+	YLPM1	45597	chr14:75295916:+	ONLY_REF_SPLICE	YES	110	204	0.02	0.01	0.0117	0.0117	NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+,YLPM1->YLP_motif_containing_1,chr14:75230069-75322244:+	COLO668_LUNG	0.01	0.02	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000803
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BMS1P20--TRBV5-1	231	0	BMS1P20	9525	chr22:22677056:+	TRBV5-1	13347	chr7:142021170:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.2777	0	BMS1P20->BMS1,_ribosome_biogenesis_factor_pseudogene_20,chr22:22657589-22677203:+,TRBV5-1->T_cell_receptor_beta_variable_5-1,chr7:142020496-142021363:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.2777	TRUE	0	0	0	1	0	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	113	54	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1142	0.5324	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.6466	TRUE	508	994	45	981	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	68	12	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6705	0.1183	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7888	FALSE	462	80	0	856	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	68	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	264	28	0.22	0.73	0.6705	0.0592	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.73	0.7297	TRUE	519	3926	326	965	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	62	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6113	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.6113	TRUE	0	0	0	518	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	21	39	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	181	33	0.25	0.65	0.2071	0.3845	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.65	0.5916	TRUE	267	562	48	632	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1319K7.1--OCLN	27	13	RP11-1319K7.1	9896	chr5:69400244:-	OCLN	23178	chr5:68830521:+	ONLY_REF_SPLICE	YES	22	0	0.65	1	0.2662	0.1282	GTEx_FI:{Blood=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Breast=[count:2=pct:1.8],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Spleen=[count:1=pct:0.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3]},RP11-1319K7.1->chr5:69390202-69424261:-,OCLN->chr5:68788119-68853931:+,occludin	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	1	0.3944	TRUE	6	0	0	2	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	22	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2169	0.0493	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2662	TRUE	477	1352	189	275	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	19	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1873	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1873	TRUE	0	0	0	434	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	19	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1873	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1873	TRUE	0	0	0	434	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IQCB1--EAF2	16	4	IQCB1	1689	chr3:121553238:-	EAF2	26736	chr3:121591384:+	ONLY_REF_SPLICE	YES	226	186	0.08	0.1	0.1578	0.0394	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_INVERSION:-:+:[104],IQCB1->IQ_motif_containing_B1,chr3:121488610-121553926:-,EAF2->ELL_associated_factor_2,chr3:121554030-121605373:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.1	0.1972	TRUE	0	0	0	1	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	8	33	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	177	34	0.19	0.55	0.0789	0.3254	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.55	0.4043	TRUE	267	562	48	632	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIPEPP3--ABHD12	16	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1578	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1578	TRUE	64	202	9	44	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	15	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.1479	0.0394	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	1	0.1873	FALSE	499	1288	110	792	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1319K7.1--OCLN	11	18	RP11-1319K7.1	12960	chr5:69394512:-	OCLN	23178	chr5:68830521:+	ONLY_REF_SPLICE	YES	6	0	0.83	1	0.1085	0.1775	GTEx_FI:{Blood=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Breast=[count:2=pct:1.8],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Spleen=[count:1=pct:0.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3]},RP11-1319K7.1->chr5:69390202-69424261:-,OCLN->chr5:68788119-68853931:+,occludin	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.286	TRUE	18	3	1	7	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	15	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1479	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1479	TRUE	46	1352	75	139	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	14	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.138	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.138	TRUE	0	0	0	81	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	13	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3294	0	0	1	0.1282	0.0099	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1381	FALSE	13	9	0	364	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	33	C15orf57	2548	chr15:40854971:-	CBX3	19815	chr7:26241383:+	INCL_NON_REF_SPLICE	YES	177	34	0.17	0.51	0.0296	0.3254	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.51	0.355	TRUE	267	562	48	632	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	10	4	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	7561	0	0	1	0.0986	0.0394	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.138	TRUE	0	0	0	100	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL5	10	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0986	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0986	TRUE	0	0	0	39	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	13	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0.1282	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1874	FALSE	462	80	0	856	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	10	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0.0986	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1578	FALSE	462	80	0	856	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	8	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0.0789	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1381	FALSE	462	80	0	856	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0.0296	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0986	FALSE	499	1288	110	792	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	8	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.81	1	0.0493	0.0789	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.1282	FALSE	499	1288	110	792	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	6	4	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0.0394	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0986	TRUE	13	49	2	38	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	10	MT-TA	1054	chrM:5602:-	MT-TC	4006	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.0986	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.138	FALSE	462	80	0	856	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	5	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0.0493	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0986	FALSE	462	80	0	856	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC1A5--MT-ND4L	6	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0592	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0592	FALSE	0	0	0	189	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	3	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0.0296	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0789	FALSE	499	1288	110	792	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	5	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0493	0.0099	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0592	FALSE	46	201	11	112	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	5	0	EIF1	1089	chr17:39845225:+	RPS28	8128	chr19:8386385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0493	TRUE	0	0	0	81	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	8	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	2	0	0.85	1	0.0296	0.0789	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.1085	FALSE	499	1288	110	792	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0493	FALSE	462	80	0	856	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.0296	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.069	FALSE	499	1288	110	792	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	6	MT-ND6	1053	chrM:14621:-	MT-TE	4526	chrM:14742:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0.0592	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0888	FALSE	499	1288	110	792	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0296	0.0592	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.0888	FALSE	467	2173	244	435	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0296	0.0592	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	1	0.0888	FALSE	515	4851	409	746	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0394	TRUE	0	0	0	81	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	4	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0394	TRUE	1	39	0	134	39	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR142--MCM7	4	0	MIR142	1039	chr17:56409831:-	MCM7	13987	chr7:99691024:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	MIR142->chr17:56408245-56409869:-,microRNA_142,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0394	TRUE	0	5	1	24	1	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-RNR2	3	4	MT-ND1	1207	chrM:3513:+	MT-RNR2	4985	chrM:1699:+	INCL_NON_REF_SPLICE	YES	20	0	0.26	1	0.0296	0.0394	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	1	0.069	FALSE	114	26	4	85	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0394	FALSE	499	1288	110	792	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1319K7.1--OCLN	2	7	RP11-1319K7.1	8728	chr5:69404135:-	OCLN	23178	chr5:68830521:+	ONLY_REF_SPLICE	YES	37	0	0.2	1	0.0197	0.069	GTEx_FI:{Blood=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Breast=[count:2=pct:1.8],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2],Spleen=[count:1=pct:0.9],Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3]},RP11-1319K7.1->chr5:69390202-69424261:-,OCLN->chr5:68788119-68853931:+,occludin	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	1	0.0887	TRUE	2	0	0	2	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COMMD1--B3GNT2	3	1	COMMD1	9512	chr2:62363114:+	B3GNT2	17072	chr2:62449347:+	ONLY_REF_SPLICE	YES	12	27	0.25	0.13	0.0296	0.0099	NEIGHBORS[48866],COMMD1->chr2:62115859-62374382:+,copper_metabolism_domain_containing_1,B3GNT2->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_2,chr2:62423248-62451866:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.25	0.0395	FALSE	0	4	0	4	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	1	EIF1	1121	chr17:39845257:+	RPS28	8168	chr19:8386425:+	INCL_NON_REF_SPLICE	YES	1661	0	0	1	0.0296	0.0099	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0395	FALSE	0	0	0	81	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	1	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	267	0	0.01	1	0.0296	0.0099	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0395	FALSE	0	0	0	81	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0296	FALSE	499	1288	110	792	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNAS	3	0	RCC1	2175	chr1:28834672:+	GNAS	34714	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0296	TRUE	0	3	0	13	2	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-109D20.1--C1orf112	3	0	RP11-109D20.1	3445	chr15:45334565:-	C1orf112	24714	chr1:169796192:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0	GTEx_FI:{Brain=[count:1=pct:0.2],Testis=[count:1=pct:1.0]},RP11-109D20.1->chr15:45333914-45350905:-,C1orf112->chr1:169631245-169823221:+,chromosome_1_open_reading_frame_112	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0296	TRUE	2	4	0	1	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0099	0.0592	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0691	FALSE	407	2205	196	549	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0099	0.0493	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0592	TRUE	160	277	29	98	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT10--UBP1	2	0	CNOT10	1338	chr3:32726974:+	UBP1	32961	chr3:33467233:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	CNOT10->CCR4-NOT_transcription_complex_subunit_10,chr3:32726637-32815367:+,UBP1->chr3:33429828-33482863:-,upstream_binding_protein_1_(LBP-1a)	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT4--RP11-155G14.5	2	0	CNOT4	8430	chr7:135095265:-	RP11-155G14.5	23695	chr7:128106617:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	CNOT4->CCR4-NOT_transcription_complex_subunit_4,chr7:135046547-135194875:-,RP11-155G14.5->chr7:128106617-128109225:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--CCNB1IP1	2	0	CPSF6	11046	chr12:69656342:+	CCNB1IP1	32498	chr14:20781960:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CCNB1IP1->Oncogene{Bushman},chr14:20779527-20801471:-,cyclin_B1_interacting_protein_1	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0197	TRUE	0	1	0	1	0	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CRNDE--CBWD1	2	0	CRNDE	2809	chr16:54959013:-	CBWD1	34882	chr9:146158:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	CRNDE->chr16:54952775-54963101:-,colorectal_neoplasia_differentially_expressed_(non-protein_coding),CBWD1->COBW_domain_containing_1,chr9:121041-188979:-	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF4A2--KIAA1430	2	0	EIF4A2	1435	chr3:186501428:+	KIAA1430	14178	chr4:186112366:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	EIF4A2->Oncogene{Bushman},chr3:186500994-186507689:+,eukaryotic_translation_initiation_factor_4A2,KIAA1430->chr4:186080819-186130658:-	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MINK1--CTDP1	2	0	MINK1	1253	chr17:4736935:+	CTDP1	38458	chr18:77496355:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	MINK1->chr17:4736683-4801356:+,misshapen_like_kinase_1,CTDP1->CTD_phosphatase_subunit_1,chr18:77439801-77514510:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--MRPL3	2	0	RCC1	2175	chr1:28834672:+	MRPL3	27527	chr3:131190123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,MRPL3->chr3:131181056-131221827:-,mitochondrial_ribosomal_protein_L3	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0197	TRUE	0	0	0	6	0	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TERF2IP--PHACTR1	2	0	TERF2IP	4157	chr16:75690239:+	PHACTR1	26869	chr6:13273092:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	TERF2IP->TERF2_interacting_protein,chr16:75681684-75795770:+,PHACTR1->chr6:12717893-13288645:+,phosphatase_and_actin_regulator_1	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	2	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	24240	chr10:75464836:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0197	TRUE	0	3	1	1	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COMMD1--B3GNT2	1	1	COMMD1	6915	chr2:62228117:+	B3GNT2	17072	chr2:62449347:+	ONLY_REF_SPLICE	NO	151	27	0.01	0.07	0.0099	0.0099	NEIGHBORS[48866],COMMD1->chr2:62115859-62374382:+,copper_metabolism_domain_containing_1,B3GNT2->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_2,chr2:62423248-62451866:+	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.07	0.0198	FALSE	1	6	2	5	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--GGA2	1	1	IGLL5	1480	chr22:23230439:+	GGA2	27039	chr16:23478099:-	ONLY_REF_SPLICE	NO	481	405	0	0	0.0099	0.0099	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,GGA2->chr16:23474863-23533316:-,golgi_associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_2	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	INTS7--ANGEL2	1	1	INTS7	1199	chr1:212208686:-	ANGEL2	37357	chr1:213173725:-	ONLY_REF_SPLICE	YES	188	126	0.01	0.02	0.0099	0.0099	INTS7->chr1:212113741-212208884:-,integrator_complex_subunit_7,ANGEL2->angel_homolog_2_(Drosophila),chr1:213165524-213189168:-	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MANBA--UBE2D3	1	1	MANBA	1277	chr4:103681875:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	YES	106	1777	0.02	0	0.0099	0.0099	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0198	FALSE	12	9	1	12	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MNAT1--PTEN	1	1	MNAT1	1210	chr14:61201669:+	PTEN	24545	chr10:89711875:+	ONLY_REF_SPLICE	YES	320	440	0.01	0	0.0099	0.0099	MNAT1->MNAT1,_CDK_activating_kinase_assembly_factor,Oncogene{Bushman},chr14:61201460-61436671:+,PTEN->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:89622870-89731687:+,phosphatase_and_tensin_homolog	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRKCA--COX7A2	1	1	PRKCA	4995	chr17:64492401:+	COX7A2	39790	chr6:75947704:-	ONLY_REF_SPLICE	NO	35	776	0.05	0	0.0099	0.0099	PRKCA->chr17:64298754-64806861:+,protein_kinase_C_alpha,COX7A2->chr6:75947391-75960039:-,cytochrome_c_oxidase_subunit_7A2	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	18992	chr12:23999127:-	ONLY_REF_SPLICE	YES	0	2	1	0.5	0.0099	0.0099	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0198	TRUE	3	4	0	10	0	FALSE	ACH-000877
EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUPT3H--ELMO1	1	1	SUPT3H	2744	chr6:45332938:-	ELMO1	28367	chr7:37382367:-	ONLY_REF_SPLICE	YES	73	5	0.03	0.29	0.0099	0.0099	SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1	EB1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.29	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000877
NCIH1581_LUNG	TIMM23B--LINC00843	88	43	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.98	1.1039	0.5394	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1581_LUNG	0.98	1	1.6433	TRUE	508	994	45	981	0	FALSE	ACH-000015
NCIH1581_LUNG	INPP4B--ANAPC10	73	37	INPP4B	7802	chr4:143646992:-	ANAPC10	63514	chr4:146017263:-	ONLY_REF_SPLICE	YES	30	37	0.79	0.75	0.9158	0.4642	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH1581_LUNG	0.75	0.79	1.38	TRUE	0	0	0	2	0	TRUE	ACH-000015
NCIH1581_LUNG	INPP4B--ANAPC10	42	86	INPP4B	11304	chr4:143481610:-	ANAPC10	63514	chr4:146017263:-	ONLY_REF_SPLICE	YES	28	37	0.82	0.78	0.5269	1.0788	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH1581_LUNG	0.78	0.82	1.6057	TRUE	0	0	0	2	0	TRUE	ACH-000015
NCIH1581_LUNG	MT-TA--MT-TN	63	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7903	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1581_LUNG	1	1	0.7903	FALSE	369	2501	205	193	0	FALSE	ACH-000015
NCIH1581_LUNG	TIMM23--RP11-464F9.1	60	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	687	3	0.09	0.96	0.7527	0.0627	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1581_LUNG	0.09	0.96	0.8154	TRUE	519	3926	326	965	0	FALSE	ACH-000015
NCIH1581_LUNG	KANSL1--ARL17B	37	37	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	50	66	0.6	0.53	0.4642	0.4642	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH1581_LUNG	0.53	0.6	0.9284	TRUE	181	1564	124	196	0	FALSE	ACH-000015
NCIH1581_LUNG	RP11-353N4.6--RP11-403I13.7	25	37	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.7	14808	chr1:149284655:+	INCL_NON_REF_SPLICE	YES	224	0	0.22	1	0.3136	0.4642	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	NCIH1581_LUNG	0.22	1	0.7778	TRUE	1	0	0	4	0	TRUE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ND4L	8	100	MT-ND4	1741	chrM:11500:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	8093	0	0.01	1	0.1004	1.2545	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1581_LUNG	0.01	1	1.3549	FALSE	344	827	44	306	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ND4L	4	94	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	73	0	0.57	1	0.0502	1.1792	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1581_LUNG	0.57	1	1.2294	FALSE	344	826	44	306	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-TA--MT-TC	26	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3262	0.0502	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1581_LUNG	1	1	0.3764	FALSE	462	80	0	856	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ND4L	3	93	MT-ND4	1178	chrM:10937:+	MT-ND4L	5464	chrM:10555:+	INCL_NON_REF_SPLICE	YES	64	0	0.6	1	0.0376	1.1667	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1581_LUNG	0.6	1	1.2043	FALSE	344	826	44	306	0	FALSE	ACH-000015
NCIH1581_LUNG	RP11-353N4.6--RP11-403I13.7	15	37	RP11-353N4.6	2221	chr1:149576702:+	RP11-403I13.7	14803	chr1:149284650:+	INCL_NON_REF_SPLICE	YES	231	0	0.18	1	0.1882	0.4642	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	NCIH1581_LUNG	0.18	1	0.6524	TRUE	1	0	0	4	0	TRUE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	17	21	RP5-857K21.11	1107	chr1:569862:+	MTATP6P1	5103	chr1:569631:+	INCL_NON_REF_SPLICE	YES	6	21	0.86	0.64	0.2133	0.2634	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.64	0.86	0.4767	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	20	9	RP5-857K21.11	1106	chr1:569861:+	MTATP6P1	5190	chr1:569718:+	INCL_NON_REF_SPLICE	YES	5	2	0.85	0.94	0.2509	0.1129	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.85	0.94	0.3638	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	19	9	RP5-857K21.11	1105	chr1:569860:+	MTATP6P1	5191	chr1:569719:+	INCL_NON_REF_SPLICE	YES	5	2	0.85	0.93	0.2383	0.1129	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.85	0.93	0.3512	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	INPP4B--ANAPC10	16	19	INPP4B	7802	chr4:143646992:-	ANAPC10	64641	chr4:146002902:-	ONLY_REF_SPLICE	YES	30	399	0.54	0.08	0.2007	0.2383	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH1581_LUNG	0.08	0.54	0.439	TRUE	0	0	0	2	0	TRUE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ATP8	19	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2383	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1581_LUNG	1	1	0.2383	FALSE	230	193	14	283	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ND4L	3	60	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	14	0	0.82	1	0.0376	0.7527	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1581_LUNG	0.82	1	0.7903	FALSE	344	821	44	306	0	FALSE	ACH-000015
NCIH1581_LUNG	INPP4B--ANAPC10	5	49	INPP4B	11304	chr4:143481610:-	ANAPC10	64641	chr4:146002902:-	ONLY_REF_SPLICE	YES	28	399	0.66	0.12	0.0627	0.6147	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH1581_LUNG	0.12	0.66	0.6774	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	RP11-353N4.6--RP11-403I13.7	7	39	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.7	14808	chr1:149284655:+	INCL_NON_REF_SPLICE	YES	236	0	0.16	1	0.0878	0.4892	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	NCIH1581_LUNG	0.16	1	0.577	TRUE	1	0	0	4	0	TRUE	ACH-000015
NCIH1581_LUNG	C15orf57--CBX3	12	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	66	101	0.23	0.17	0.1505	0.1004	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1581_LUNG	0.17	0.23	0.2509	TRUE	267	562	48	632	0	FALSE	ACH-000015
NCIH1581_LUNG	POLR2A--MT-CO3	13	4	POLR2A	16874	chr17:7417222:+	MT-CO3	20977	chrM:9598:+	INCL_NON_REF_SPLICE	YES	569	19274	0.03	0	0.1631	0.0502	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH1581_LUNG	0	0.03	0.2133	FALSE	0	0	0	5	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	5	34	RP5-857K21.11	1205	chr1:569960:+	MTATP6P1	5047	chr1:569575:+	INCL_NON_REF_SPLICE	YES	166	38	0.19	0.51	0.0627	0.4265	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.19	0.51	0.4892	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	ANKLE2--PGAM5	13	1	ANKLE2	6732	chr12:133332743:-	PGAM5	37560	chr12:133298420:+	INCL_NON_REF_SPLICE	NO	71	320	0.16	0.04	0.1631	0.0125	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[3026],ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	NCIH1581_LUNG	0.04	0.16	0.1756	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	INPP4B--ANAPC10	4	37	INPP4B	8922	chr4:143581930:-	ANAPC10	63514	chr4:146017263:-	ONLY_REF_SPLICE	YES	30	37	0.58	0.53	0.0502	0.4642	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH1581_LUNG	0.53	0.58	0.5144	TRUE	0	0	0	2	0	TRUE	ACH-000015
NCIH1581_LUNG	CHFR--FGD4	11	8	CHFR	2239	chr12:133522207:-	FGD4	42528	chr12:32717071:+	ONLY_REF_SPLICE	YES	0	6	1	0.76	0.138	0.1004	CHFR->Oncogene{Bushman},checkpoint_with_forkhead_and_ring_finger_domains,_E3_ubiquitin_protein_ligase,chr12:133398773-133532890:-,FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+	NCIH1581_LUNG	0.76	1	0.2384	TRUE	0	0	0	2	0	TRUE	ACH-000015
NCIH1581_LUNG	MT-TA--MT-TN	3	39	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0376	0.4892	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1581_LUNG	1	1	0.5268	FALSE	369	2501	205	193	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-TA--MT-TN	6	24	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0753	0.3011	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1581_LUNG	1	1	0.3764	FALSE	369	2501	205	193	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	3	36	RP5-857K21.11	1465	chr1:570220:+	MTATP6P1	4979	chr1:569507:+	INCL_NON_REF_SPLICE	YES	2	106	0.95	0.27	0.0376	0.4516	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.27	0.95	0.4892	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-TA--MT-TC	10	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1254	0.0753	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1581_LUNG	1	1	0.2007	FALSE	462	80	0	856	0	FALSE	ACH-000015
NCIH1581_LUNG	RP11-680G10.1--GSE1	10	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	74	1	0.18	0.1254	0.0753	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1581_LUNG	0.18	1	0.2007	TRUE	458	1351	185	561	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	8	13	RP5-857K21.11	1045	chr1:569800:+	MTATP6P1	5014	chr1:569542:+	INCL_NON_REF_SPLICE	YES	0	38	1	0.36	0.1004	0.1631	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.36	1	0.2635	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	INPP4B--ANAPC10	1	40	INPP4B	8922	chr4:143581930:-	ANAPC10	61998	chr4:146018912:-	ONLY_REF_SPLICE	NO	30	32	0.58	0.56	0.0125	0.5018	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH1581_LUNG	0.56	0.58	0.5143	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	RP11-680G10.1--GSE1	11	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.138	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1581_LUNG	1	1	0.138	TRUE	465	1949	224	605	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	6	19	RP5-857K21.11	1072	chr1:569827:+	MTATP6P1	4797	chr1:569325:+	INCL_NON_REF_SPLICE	YES	1	61	0.96	0.29	0.0753	0.2383	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.29	0.96	0.3136	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	HSP90AB1--MT-RNR2	10	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	7675	0	0	1	0.1254	0.0251	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1581_LUNG	0	1	0.1505	FALSE	13	9	0	364	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	3	30	RP5-857K21.11	1141	chr1:569896:+	MTATP6P1	5103	chr1:569631:+	INCL_NON_REF_SPLICE	YES	249	21	0.12	0.61	0.0376	0.3763	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.12	0.61	0.4139	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ATP8	10	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	15430	0	0	1	0.1254	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1581_LUNG	0	1	0.1379	FALSE	230	193	14	283	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-TA--MT-TN	7	13	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0878	0.1631	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1581_LUNG	1	1	0.2509	FALSE	369	2501	205	193	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ATP8	10	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1254	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1581_LUNG	1	1	0.1254	FALSE	230	198	14	283	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ND4L	3	27	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1911	0	0.02	1	0.0376	0.3387	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1581_LUNG	0.02	1	0.3763	FALSE	344	827	44	306	0	FALSE	ACH-000015
NCIH1581_LUNG	HSP90AB1--MT-RNR2	9	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	7712	0	0	1	0.1129	0.0251	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1581_LUNG	0	1	0.138	FALSE	13	9	0	364	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	5	17	RP5-857K21.11	1075	chr1:569830:+	MTATP6P1	5064	chr1:569592:+	INCL_NON_REF_SPLICE	YES	1	38	0.96	0.37	0.0627	0.2133	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.37	0.96	0.276	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	4	21	RP5-857K21.11	1087	chr1:569842:+	MTATP6P1	4917	chr1:569445:+	INCL_NON_REF_SPLICE	YES	3	91	0.89	0.22	0.0502	0.2634	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.22	0.89	0.3136	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	4	20	RP5-857K21.11	1090	chr1:569845:+	MTATP6P1	5082	chr1:569610:+	INCL_NON_REF_SPLICE	YES	3	40	0.89	0.38	0.0502	0.2509	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.38	0.89	0.3011	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	5	16	RP5-857K21.11	1083	chr1:569838:+	MTATP6P1	5147	chr1:569675:+	INCL_NON_REF_SPLICE	YES	3	2	0.88	0.91	0.0627	0.2007	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.88	0.91	0.2634	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ATP8	7	5	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	21397	6	0	0.67	0.0878	0.0627	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1581_LUNG	0	0.67	0.1505	FALSE	231	217	16	283	0	FALSE	ACH-000015
NCIH1581_LUNG	LYPLAL1--RRP15	8	0	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1004	0	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	NCIH1581_LUNG	1	1	0.1004	TRUE	0	12	0	13	2	TRUE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ATP8	6	8	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2977	82	0	0.15	0.0753	0.1004	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1581_LUNG	0	0.15	0.1757	FALSE	216	209	16	281	0	FALSE	ACH-000015
NCIH1581_LUNG	RP11-353N4.6--RP11-403I13.7	5	12	RP11-353N4.6	2219	chr1:149576700:+	RP11-403I13.7	16052	chr1:149286755:+	ONLY_REF_SPLICE	YES	224	22	0.07	0.44	0.0627	0.1505	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	NCIH1581_LUNG	0.07	0.44	0.2132	TRUE	0	0	0	3	0	TRUE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	7	2	RP5-857K21.11	1146	chr1:569901:+	MTATP6P1	5219	chr1:569747:+	INCL_NON_REF_SPLICE	YES	241	0	0.04	1	0.0878	0.0251	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.04	1	0.1129	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	4	13	RP5-857K21.11	1039	chr1:569794:+	MTATP6P1	5009	chr1:569537:+	INCL_NON_REF_SPLICE	YES	0	38	1	0.31	0.0502	0.1631	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.31	1	0.2133	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ATP8	6	4	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	22094	0	0	1	0.0753	0.0502	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1581_LUNG	0	1	0.1255	FALSE	231	217	16	283	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ATP8	5	8	MT-ND4	2320	chrM:12079:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1	6	0.93	0.68	0.0627	0.1004	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1581_LUNG	0.68	0.93	0.1631	FALSE	209	205	15	279	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	3	15	RP5-857K21.11	1070	chr1:569825:+	MTATP6P1	5106	chr1:569634:+	INCL_NON_REF_SPLICE	YES	1	20	0.95	0.47	0.0376	0.1882	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.47	0.95	0.2258	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	C15orf57--CBX3	5	6	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	63	106	0.15	0.09	0.0627	0.0753	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH1581_LUNG	0.09	0.15	0.138	TRUE	267	562	48	632	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	4	10	RP5-857K21.11	1089	chr1:569844:+	MTATP6P1	5174	chr1:569702:+	INCL_NON_REF_SPLICE	YES	3	2	0.82	0.88	0.0502	0.1254	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.82	0.88	0.1756	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	4	10	RP5-857K21.11	1123	chr1:569878:+	MTATP6P1	5184	chr1:569712:+	INCL_NON_REF_SPLICE	YES	259	2	0.05	0.88	0.0502	0.1254	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.05	0.88	0.1756	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	CALM3--MT-ND4L	5	5	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1054	0	0.01	1	0.0627	0.0627	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1581_LUNG	0.01	1	0.1254	FALSE	1	1	0	107	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ATP8	3	13	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	18775	0	0	1	0.0376	0.1631	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1581_LUNG	0	1	0.2007	FALSE	231	217	16	283	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-TA--MT-TN	6	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0753	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1581_LUNG	1	1	0.0753	FALSE	369	2501	205	193	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-TA--MT-TN	6	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0753	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1581_LUNG	1	1	0.0753	FALSE	369	2501	205	193	0	FALSE	ACH-000015
NCIH1581_LUNG	RERE--ST3GAL3	4	6	RERE	5242	chr1:8763114:-	ST3GAL3	47870	chr1:44280563:+	ONLY_REF_SPLICE	YES	30	48	0.25	0.17	0.0502	0.0753	RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-,ST3GAL3->ST3_beta-galactoside_alpha-2,3-sialyltransferase_3,chr1:44171495-44396831:+	NCIH1581_LUNG	0.17	0.25	0.1255	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ATP8	3	9	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	21017	0	0	1	0.0376	0.1129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1581_LUNG	0	1	0.1505	FALSE	231	217	16	283	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ATP8	3	9	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	21063	0	0	1	0.0376	0.1129	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1581_LUNG	0	1	0.1505	FALSE	231	217	16	283	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ATP8	5	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	15837	0	0	1	0.0627	0.0125	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1581_LUNG	0	1	0.0752	FALSE	231	204	14	283	0	FALSE	ACH-000015
NCIH1581_LUNG	RP11-353N4.6--RP11-403I13.7	2	13	RP11-353N4.6	3181	chr1:149577662:+	RP11-403I13.7	16052	chr1:149286755:+	ONLY_REF_SPLICE	YES	236	22	0.06	0.41	0.0251	0.1631	RP11-353N4.6->chr1:149575482-149616786:+,RP11-403I13.7->chr1:149284645-149286975:+	NCIH1581_LUNG	0.06	0.41	0.1882	TRUE	0	0	0	3	0	TRUE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ATP8	4	4	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	22014	0	0	1	0.0502	0.0502	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1581_LUNG	0	1	0.1004	FALSE	231	217	16	283	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1581_LUNG	1	1	0.0627	FALSE	231	205	14	283	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	5	0	RP5-857K21.11	1075	chr1:569830:+	MTATP6P1	5225	chr1:569753:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0627	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	1	1	0.0627	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	3	7	RP5-857K21.11	1020	chr1:569775:+	MTATP6P1	4992	chr1:569520:+	INCL_NON_REF_SPLICE	YES	0	81	1	0.11	0.0376	0.0878	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.11	1	0.1254	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	3	7	RP5-857K21.11	1023	chr1:569778:+	MTATP6P1	4996	chr1:569524:+	INCL_NON_REF_SPLICE	YES	0	38	1	0.21	0.0376	0.0878	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.21	1	0.1254	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20167	82	0	0.1	0.0376	0.0753	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1581_LUNG	0	0.1	0.1129	FALSE	231	217	16	283	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-TA--MT-TC	3	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0.0753	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1581_LUNG	1	1	0.1129	FALSE	462	80	0	856	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	4	2	RP5-857K21.11	1006	chr1:569761:+	MTATP6P1	4825	chr1:569353:+	INCL_NON_REF_SPLICE	YES	0	68	1	0.08	0.0502	0.0251	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.08	1	0.0753	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	ANKRD11--GNAL	4	0	ANKRD11	1317	chr16:89556653:-	GNAL	48530	chr18:11862394:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0502	0	ANKRD11->ankyrin_repeat_domain_11,chr16:89334038-89556969:-,GNAL->G_protein_subunit_alpha_L,chr18:11688955-11885684:+	NCIH1581_LUNG	1	1	0.0502	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	22142	0	0	1	0.0376	0.0502	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1581_LUNG	0	1	0.0878	FALSE	231	217	16	283	0	FALSE	ACH-000015
NCIH1581_LUNG	POLR2A--MT-CO3	3	4	POLR2A	16612	chr17:7416960:+	MT-CO3	20945	chrM:9566:+	INCL_NON_REF_SPLICE	YES	814	19884	0.01	0	0.0376	0.0502	POLR2A->chr17:7387685-7417933:+,polymerase_(RNA)_II_subunit_A,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH1581_LUNG	0	0.01	0.0878	FALSE	0	0	0	5	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	22809	1	0	0.86	0.0376	0.0376	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1581_LUNG	0	0.86	0.0752	FALSE	231	216	16	283	0	FALSE	ACH-000015
NCIH1581_LUNG	ANK1--RP11-863K10.2	3	2	ANK1	11509	chr8:41580643:-	RP11-863K10.2	53515	chr8:37590596:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0376	0.0251	ANK1->ankyrin_1,chr8:41510739-41754280:-,RP11-863K10.2->chr8:37575097-37591274:+	NCIH1581_LUNG	0.83	1	0.0627	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0251	0.0753	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1581_LUNG	0.89	1	0.1004	FALSE	407	2205	196	549	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-CO1--SUMO2	3	1	MT-CO1	1612	chrM:6515:+	SUMO2	5590	chr17:73179031:-	INCL_NON_REF_SPLICE	YES	24209	0	0	1	0.0376	0.0125	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,SUMO2->chr17:73163408-73179078:-,small_ubiquitin-like_modifier_2	NCIH1581_LUNG	0	1	0.0501	FALSE	0	0	0	12	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-857K21.11--MTATP6P1	3	1	RP5-857K21.11	1192	chr1:569947:+	MTATP6P1	5220	chr1:569748:+	INCL_NON_REF_SPLICE	YES	186	0	0.02	1	0.0376	0.0125	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1581_LUNG	0.02	1	0.0501	TRUE	16	42	4	10	0	FALSE	ACH-000015
NCIH1581_LUNG	GPC5--GPC5-IT1	3	0	GPC5	10063	chr13:92797242:+	GPC5-IT1	16096	chr13:93161766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0376	0	NEIGHBORS_OVERLAP:+:+:[25488],GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5,GPC5-IT1->GPC5_intronic_transcript_1,chr13:93136859-93162347:+	NCIH1581_LUNG	1	1	0.0376	FALSE	21	23	3	6	0	FALSE	ACH-000015
NCIH1581_LUNG	INPP4B--ANAPC10	2	4	INPP4B	7802	chr4:143646992:-	ANAPC10	71023	chr4:145916755:-	ONLY_REF_SPLICE	YES	30	351	0.17	0.02	0.0251	0.0502	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH1581_LUNG	0.02	0.17	0.0753	TRUE	0	0	0	1	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1581_LUNG	1	1	0.0376	FALSE	231	204	14	283	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1581_LUNG	1	1	0.0376	FALSE	344	821	44	306	0	FALSE	ACH-000015
NCIH1581_LUNG	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0376	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1581_LUNG	1	1	0.0376	FALSE	462	80	0	856	0	FALSE	ACH-000015
NCIH1581_LUNG	NDUFA4--PHF14	3	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0376	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1581_LUNG	1	1	0.0376	TRUE	19	32	3	60	0	FALSE	ACH-000015
NCIH1581_LUNG	RB1--ITM2B	2	2	RB1	17872	chr13:48955579:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	64	1393	0.06	0	0.0251	0.0251	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	NCIH1581_LUNG	0	0.06	0.0502	FALSE	27	49	8	8	0	FALSE	ACH-000015
NCIH1581_LUNG	SF1--GNAS	2	2	SF1	3289	chr11:64543970:-	GNAS	32063	chr20:57470667:+	ONLY_REF_SPLICE	YES	409	1096	0.01	0	0.0251	0.0251	GTEx_FI:{Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=3,Pituitary=3,Minor_Salivary_Gland=1,Brain_-_Hypothalamus=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	NCIH1581_LUNG	0	0.01	0.0502	FALSE	4	13	1	15	0	FALSE	ACH-000015
NCIH1581_LUNG	ASPH--FUS	2	1	ASPH	8053	chr8:62593527:-	FUS	55904	chr16:31199646:+	ONLY_REF_SPLICE	YES	1148	1228	0	0	0.0251	0.0125	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH1581_LUNG	0	0	0.0376	FALSE	0	0	0	4	0	FALSE	ACH-000015
NCIH1581_LUNG	PBX3--MAPKAP1	2	1	PBX3	2279	chr9:128510902:+	MAPKAP1	43593	chr9:128230388:-	ONLY_REF_SPLICE	YES	84	229	0.03	0.01	0.0251	0.0125	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	NCIH1581_LUNG	0.01	0.03	0.0376	FALSE	0	0	0	3	0	FALSE	ACH-000015
NCIH1581_LUNG	TGFB2--RRP15	2	1	TGFB2	1813	chr1:218520389:+	RRP15	16346	chr1:218475636:+	ONLY_REF_SPLICE	YES	129	442	0.02	0.01	0.0251	0.0125	LOCAL_REARRANGEMENT:+:[8252],TGFB2->Oncogene{Bushman},chr1:218519577-218617961:+,transforming_growth_factor_beta_2,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	NCIH1581_LUNG	0.01	0.02	0.0376	FALSE	0	1	0	1	0	FALSE	ACH-000015
NCIH1581_LUNG	ACP2--METTL3	2	0	ACP2	1231	chr11:47270227:-	METTL3	21188	chr14:21967281:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	ACP2->acid_phosphatase_2,_lysosomal,chr11:47260853-47270457:-,METTL3->chr14:21966277-21979517:-,methyltransferase_like_3	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	C6orf62--TIMMDC1	2	0	C6orf62	3297	chr6:24718768:-	TIMMDC1	15033	chr3:119222379:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	C6orf62->chr6:24705089-24721064:-,chromosome_6_open_reading_frame_62,TIMMDC1->chr3:119217379-119243937:+,translocase_of_inner_mitochondrial_membrane_domain_containing_1	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	DAZAP1--C19orf24	2	0	DAZAP1	1234	chr19:1407801:+	C19orf24	23989	chr19:1277182:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Visceral_(Omentum)=1},DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+,C19orf24->chr19:1275026-1279248:+,chromosome_19_open_reading_frame_24	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	1	1	0	TRUE	ACH-000015
NCIH1581_LUNG	HCN2--ANAPC11	1	4	HCN2	4271	chr19:605222:+	ANAPC11	16534	chr17:79851428:+	ONLY_REF_SPLICE	YES	29	669	0.15	0.01	0.0125	0.0502	HCN2->chr19:589893-617159:+,hyperpolarization_activated_cyclic_nucleotide_gated_potassium_channel_2,ANAPC11->anaphase_promoting_complex_subunit_11,chr17:79848666-79858867:+	NCIH1581_LUNG	0.01	0.15	0.0627	FALSE	0	0	0	1	0	FALSE	ACH-000015
NCIH1581_LUNG	NCL--PNISR	2	0	NCL	10526	chr2:232321712:-	PNISR	32159	chr6:99848187:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	NCL->chr2:232318242-232348352:-,nucleolin,PNISR->PNN-interacting_serine/arginine-rich_protein,chr6:99845927-99873207:-	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	NFIC--CCDC130	2	0	NFIC	2241	chr19:3366664:+	CCDC130	28696	chr19:13862422:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	NFIC->Oncogene{Bushman},chr19:3359561-3469215:+,nuclear_factor_I_C,CCDC130->chr19:13842574-13874110:+,coiled-coil_domain_containing_130	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	POLR3H--AKAP8L	2	0	POLR3H	2952	chr22:41936703:-	AKAP8L	27797	chr19:15491423:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	POLR3H->chr22:41921808-41940610:-,polymerase_(RNA)_III_subunit_H,AKAP8L->A-kinase_anchoring_protein_8_like,chr19:15490859-15529952:-	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	PROSC--DAP3	2	0	PROSC	2996	chr8:37623873:+	DAP3	27888	chr1:155708400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	GTEx_FI:{Muscle=[count:1=pct:0.4],Vagina=[count:1=pct:1.8]},GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Vagina=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),DAP3->chr1:155657751-155708801:+,death_associated_protein_3	NCIH1581_LUNG	1	1	0.0251	TRUE	2	0	0	4	0	FALSE	ACH-000015
NCIH1581_LUNG	RCC1--FERMT2	2	0	RCC1	2175	chr1:28834672:+	FERMT2	26476	chr14:53348546:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,FERMT2->chr14:53323986-53419153:-,fermitin_family_member_2	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	REV3L--AHSA2	2	0	REV3L	12348	chr6:111708968:-	AHSA2	50667	chr2:61406116:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,AHSA2->AHA1,_activator_of_heat_shock_90kDa_protein_ATPase_homolog_2_(yeast),chr2:61404553-61418338:+	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	SLC25A13--GTPBP10	2	0	SLC25A13	1206	chr7:95951254:-	GTPBP10	32979	chr7:89982130:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	SLC25A13->chr7:95749532-95951459:-,solute_carrier_family_25_member_13,GTPBP10->GTP_binding_protein_10_(putative),chr7:89964537-90020769:+	NCIH1581_LUNG	1	1	0.0251	TRUE	0	1	0	1	1	TRUE	ACH-000015
NCIH1581_LUNG	TSPAN4--TACC3	2	0	TSPAN4	3911	chr11:847300:+	TACC3	17018	chr4:1725148:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	TSPAN4->chr11:842808-867116:+,tetraspanin_4,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	ZNF638--USP47	2	0	ZNF638	16374	chr2:71597135:+	USP47	81868	chr11:11977548:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0251	0	ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638,USP47->chr11:11862970-11980870:+,ubiquitin_specific_peptidase_47	NCIH1581_LUNG	1	1	0.0251	TRUE	0	0	0	1	0	TRUE	ACH-000015
NCIH1581_LUNG	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.8	0.67	0.0125	0.0376	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1581_LUNG	0.67	0.8	0.0501	FALSE	515	4851	409	746	0	FALSE	ACH-000015
NCIH1581_LUNG	ANKLE2--PGAM5	1	2	ANKLE2	17975	chr12:133313479:-	PGAM5	36404	chr12:133297264:+	ONLY_REF_SPLICE	NO	138	474	0.02	0.01	0.0125	0.0251	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:-:+:[3026],ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-,PGAM5->PGAM_family_member_5,_mitochondrial_serine/threonine_protein_phosphatase,chr12:133287405-133299228:+	NCIH1581_LUNG	0.01	0.02	0.0376	FALSE	0	0	0	1	0	FALSE	ACH-000015
NCIH1581_LUNG	GGACT--PCCA	1	2	GGACT	3102	chr13:101236079:-	PCCA	36410	chr13:101101506:+	ONLY_REF_SPLICE	NO	10	143	0.23	0.02	0.0125	0.0251	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	NCIH1581_LUNG	0.02	0.23	0.0376	TRUE	0	2	0	2	1	FALSE	ACH-000015
NCIH1581_LUNG	ASPH--FUS	1	1	ASPH	23555	chr8:62546242:-	FUS	55904	chr16:31199646:+	ONLY_REF_SPLICE	YES	835	1228	0	0	0.0125	0.0125	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NCIH1581_LUNG	0	0	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000015
NCIH1581_LUNG	ATL2--HNRNPLL	1	1	ATL2	1143	chr2:38604285:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	NO	194	151	0.01	0.01	0.0125	0.0125	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	NCIH1581_LUNG	0.01	0.01	0.025	FALSE	1	4	0	6	0	FALSE	ACH-000015
NCIH1581_LUNG	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	33	38	0.06	0.05	0.0125	0.0125	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	NCIH1581_LUNG	0.05	0.06	0.025	FALSE	118	557	29	88	0	FALSE	ACH-000015
NCIH1581_LUNG	DSCR4--KCNJ6	1	1	DSCR4	1233	chr21:39493222:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	15	0	0.12	1	0.0125	0.0125	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	NCIH1581_LUNG	0.12	1	0.025	FALSE	0	24	0	27	0	FALSE	ACH-000015
NCIH1581_LUNG	FAM208B--GDI2	1	1	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	12	732	0.14	0	0.0125	0.0125	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	NCIH1581_LUNG	0	0.14	0.025	FALSE	0	6	0	16	3	FALSE	ACH-000015
NCIH1581_LUNG	FNDC3A--ITM2B	1	1	FNDC3A	3144	chr13:49580425:+	ITM2B	36852	chr13:48827944:+	ONLY_REF_SPLICE	NO	62	1393	0.03	0	0.0125	0.0125	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Pancreas=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Whole_Blood=1},FNDC3A->chr13:49550048-49783915:+,fibronectin_type_III_domain_containing_3A,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	NCIH1581_LUNG	0	0.03	0.025	FALSE	0	2	0	2	1	FALSE	ACH-000015
NCIH1581_LUNG	IMMP1L--ELP4	1	1	IMMP1L	1127	chr11:31531066:-	ELP4	22162	chr11:31616317:+	ONLY_REF_SPLICE	NO	5	89	0.29	0.02	0.0125	0.0125	LOCAL_INVERSION:-:+:[105],IMMP1L->chr11:31453948-31531192:-,inner_mitochondrial_membrane_peptidase_subunit_1,ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4	NCIH1581_LUNG	0.02	0.29	0.025	TRUE	0	0	0	2	0	FALSE	ACH-000015
NCIH1581_LUNG	INPP4B--ANAPC10	1	1	INPP4B	2181	chr4:143767362:-	ANAPC10	71023	chr4:145916755:-	ONLY_REF_SPLICE	YES	13	351	0.13	0.01	0.0125	0.0125	INPP4B->ArcherDX_panel,FoundationOne_panel,chr4:142944313-143768585:-,inositol_polyphosphate-4-phosphatase_type_II_B,ANAPC10->anaphase_promoting_complex_subunit_10,chr4:145888264-146019693:-	NCIH1581_LUNG	0.01	0.13	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000015
NCIH1581_LUNG	MSH3--DSP	1	1	MSH3	22464	chr5:80088663:+	DSP	33333	chr6:7555951:+	ONLY_REF_SPLICE	NO	39	106	0.05	0.02	0.0125	0.0125	MSH3->Oncogene{Bushman},chr5:79950467-80172279:+,mutS_homolog_3,DSP->chr6:7541808-7586950:+,desmoplakin	NCIH1581_LUNG	0.02	0.05	0.025	TRUE	0	0	0	1	0	FALSE	ACH-000015
NCIH1581_LUNG	PBX3--MAPKAP1	1	1	PBX3	2279	chr9:128510902:+	MAPKAP1	23367	chr9:128434922:-	ONLY_REF_SPLICE	YES	84	295	0.02	0.01	0.0125	0.0125	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	NCIH1581_LUNG	0.01	0.02	0.025	FALSE	0	1	0	3	0	FALSE	ACH-000015
NCIH1581_LUNG	RB1--ITM2B	1	1	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	NO	39	1393	0.05	0	0.0125	0.0125	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	NCIH1581_LUNG	0	0.05	0.025	FALSE	53	73	8	19	0	FALSE	ACH-000015
NCIH1581_LUNG	RP11-20I20.2--CTBP1	1	1	RP11-20I20.2	1114	chr4:1107540:+	CTBP1	8481	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	44	1	0.04	0.0125	0.0125	LOCAL_INVERSION:+:-:[78471],RP11-20I20.2->chr4:1107427-1126765:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH1581_LUNG	0.04	1	0.025	TRUE	0	1	1	6	1	TRUE	ACH-000015
NCIH1581_LUNG	RP11-20I20.2--CTBP1	1	1	RP11-20I20.2	1114	chr4:1107540:+	CTBP1	16701	chr4:1222131:-	ONLY_REF_SPLICE	YES	0	540	1	0	0.0125	0.0125	LOCAL_INVERSION:+:-:[78471],RP11-20I20.2->chr4:1107427-1126765:+,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	NCIH1581_LUNG	0	1	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000015
NCIH1581_LUNG	RP5-977B1.7--TGIF2	1	1	RP5-977B1.7	2583	chr20:35199844:-	TGIF2	17191	chr20:35207144:+	ONLY_REF_SPLICE	YES	13	8	0.13	0.2	0.0125	0.0125	LOCAL_INVERSION:-:+:[97],RP5-977B1.7->chr20:35136563-35201794:-,TGIF2->TGFB_induced_factor_homeobox_2,chr20:35201891-35222353:+	NCIH1581_LUNG	0.13	0.2	0.025	TRUE	0	3	0	3	3	TRUE	ACH-000015
NCIH1581_LUNG	SF1--SPG7	1	1	SF1	3289	chr11:64543970:-	SPG7	26275	chr16:89590414:+	ONLY_REF_SPLICE	YES	409	183	0	0.01	0.0125	0.0125	GTEx_v2:{count=3;pct=0.03%;dist=Small_Intestine_-_Terminal_Ileum=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	NCIH1581_LUNG	0	0.01	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000015
NCIH1581_LUNG	SLC9A2--YLPM1	1	1	SLC9A2	1431	chr2:103236596:+	YLPM1	45939	chr14:75295916:+	ONLY_REF_SPLICE	YES	8	164	0.2	0.01	0.0125	0.0125	SLC9A2->Oncogene{Bushman},chr2:103236166-103327777:+,solute_carrier_family_9_member_A2,YLPM1->YLP_motif_containing_1,chr14:75230069-75322244:+	NCIH1581_LUNG	0.01	0.2	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000015
NCIH1581_LUNG	ZNF385D-AS2--UBE2E1	1	1	ZNF385D-AS2	3248	chr3:22000415:+	UBE2E1	14599	chr3:23852951:+	ONLY_REF_SPLICE	YES	19	277	0.1	0.01	0.0125	0.0125	ZNF385D-AS2->ZNF385D_antisense_RNA_2,chr3:21984058-22021320:+,UBE2E1->chr3:23847394-23932807:+,ubiquitin_conjugating_enzyme_E2_E1	NCIH1581_LUNG	0.01	0.1	0.025	FALSE	0	0	0	1	0	FALSE	ACH-000015
NCIH211_LUNG	DDX52--AATF	428	183	DDX52	2355	chr17:36002139:-	AATF	27169	chr17:35307514:+	ONLY_REF_SPLICE	YES	132	216	0.82	0.74	4.358	1.8633	DDX52->DEAD-box_helicase_52,chr17:35969787-36003493:-,AATF->Oncogene{Bushman},apoptosis_antagonizing_transcription_factor,chr17:35306175-35414171:+	NCIH211_LUNG	0.74	0.82	6.2213	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	IL1RAPL2--NRK	280	94	IL1RAPL2	4112	chrX:104440430:+	NRK	39047	chrX:105168687:+	ONLY_REF_SPLICE	YES	0	0	1	1	2.851	0.9571	NEIGHBORS[54714],IL1RAPL2->chrX:103810996-105011822:+,interleukin_1_receptor_accessory_protein_like_2,NRK->Nik_related_kinase,chrX:105066536-105202602:+	NCIH211_LUNG	1	1	3.8081	FALSE	0	0	0	1	0	FALSE	ACH-000639
NCIH211_LUNG	TIMM23B--LINC00843	183	69	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.8633	0.7026	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH211_LUNG	1	1	2.5659	TRUE	508	994	45	981	0	FALSE	ACH-000639
NCIH211_LUNG	PTPN12--CCDC146	186	34	PTPN12	1371	chr7:77166962:+	CCDC146	31352	chr7:76866264:+	ONLY_REF_SPLICE	YES	6	0	0.97	1	1.8939	0.3462	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	NCIH211_LUNG	0.97	1	2.2401	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	TIMM23--RP11-464F9.1	120	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	336	1	0.27	0.99	1.2219	0.0305	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH211_LUNG	0.27	0.99	1.2524	TRUE	519	3926	326	965	0	FALSE	ACH-000639
NCIH211_LUNG	KANSL1--ARL17B	95	47	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	66	131	0.68	0.52	0.9673	0.4786	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH211_LUNG	0.52	0.68	1.4459	TRUE	181	1564	124	196	0	FALSE	ACH-000639
NCIH211_LUNG	CDC20--HECTD4	97	37	CDC20	1684	chr1:43825309:+	HECTD4	49323	chr12:112666615:-	ONLY_REF_SPLICE	YES	133	62	0.5	0.68	0.9877	0.3767	CDC20->Oncogene{Bushman},cell_division_cycle_20,chr1:43824626-43828874:+,HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-	NCIH211_LUNG	0.5	0.68	1.3644	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	NUMA1--TTC28	77	36	NUMA1	3816	chr11:71780888:-	TTC28	56795	chr22:28492396:-	ONLY_REF_SPLICE	YES	158	6	0.42	0.95	0.784	0.3666	NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28	NCIH211_LUNG	0.42	0.95	1.1506	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	MT-TA--MT-TC	81	17	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8248	0.1731	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH211_LUNG	1	1	0.9979	FALSE	462	80	0	856	0	FALSE	ACH-000639
NCIH211_LUNG	C6orf106--NQO2	73	32	C6orf106	4888	chr6:34614378:-	NQO2	16276	chr6:2994165:+	ONLY_REF_SPLICE	YES	126	0	0.45	1	0.7433	0.3258	C6orf106->chr6:34555065-34664636:-,chromosome_6_open_reading_frame_106,NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+	NCIH211_LUNG	0.45	1	1.0691	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	HNRNPA3--AGPS	49	13	HNRNPA3	5894	chr2:178084042:+	AGPS	34005	chr2:178402802:+	ONLY_REF_SPLICE	YES	1123	64	0.05	0.49	0.4989	0.1324	HNRNPA3->Oncogene{Bushman},chr2:178077291-178088686:+,heterogeneous_nuclear_ribonucleoprotein_A3,AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+	NCIH211_LUNG	0.05	0.49	0.6313	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	PTPN12--CCDC146	46	10	PTPN12	1371	chr7:77166962:+	CCDC146	34175	chr7:76883823:+	ONLY_REF_SPLICE	YES	6	52	0.9	0.52	0.4684	0.1018	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	NCIH211_LUNG	0.52	0.9	0.5702	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	CTD-2008L17.1--RP11-456O19.2	40	28	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	12	0	0.85	1	0.4073	0.2851	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH211_LUNG	0.85	1	0.6924	FALSE	20	187	4	79	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	3	173	MT-ND4	1793	chrM:11552:+	MT-ND4L	5383	chrM:10474:+	INCL_NON_REF_SPLICE	YES	7695	0	0.02	1	0.0305	1.7615	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0.02	1	1.792	FALSE	344	827	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	6	160	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	6	1	0.97	0.99	0.0611	1.6292	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0.97	0.99	1.6903	FALSE	344	826	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	3	165	MT-ND4	1192	chrM:10951:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	YES	23	1	0.88	0.99	0.0305	1.6801	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0.88	0.99	1.7106	FALSE	344	826	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	3	161	MT-ND4	1116	chrM:10875:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	7	1	0.96	0.99	0.0305	1.6393	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0.96	0.99	1.6698	FALSE	344	826	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	PTPN12--CCDC146	34	20	PTPN12	1371	chr7:77166962:+	CCDC146	32435	chr7:76871008:+	ONLY_REF_SPLICE	YES	6	0	0.9	1	0.3462	0.2036	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	NCIH211_LUNG	0.9	1	0.5498	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	3	120	MT-ND4	1475	chrM:11234:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	537	0	0.19	1	0.0305	1.2219	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0.19	1	1.2524	FALSE	344	827	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	5	109	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	1	0.95	0.99	0.0509	1.1099	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0.95	0.99	1.1608	FALSE	344	821	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	ATXN2--UNC5C	29	7	ATXN2	6723	chr12:111990084:-	UNC5C	38281	chr4:96256782:-	ONLY_REF_SPLICE	YES	74	0	0.33	1	0.2953	0.0713	ATXN2->ataxin_2,chr12:111890018-112037480:-,UNC5C->chr4:96083655-96470357:-,unc-5_netrin_receptor_C	NCIH211_LUNG	0.33	1	0.3666	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	3	111	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	91	0	0.56	1	0.0305	1.1302	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0.56	1	1.1607	FALSE	344	827	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	SPTAN1--COLQ	27	10	SPTAN1	2990	chr9:131329256:+	COLQ	50947	chr3:15531144:-	ONLY_REF_SPLICE	YES	31	1	0.54	0.97	0.2749	0.1018	SPTAN1->Oncogene{Bushman},chr9:131314866-131395941:+,spectrin_alpha,_non-erythrocytic_1,COLQ->chr3:15491640-15563258:-,collagen-like_tail_subunit_(single_strand_of_homotrimer)_of_asymmetric_acetylcholinesterase	NCIH211_LUNG	0.54	0.97	0.3767	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	17	48	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	13112	0	0	1	0.1731	0.4887	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0	1	0.6618	FALSE	328	800	43	304	0	FALSE	ACH-000639
NCIH211_LUNG	ZNF654--HMGB2	29	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2953	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH211_LUNG	1	1	0.2953	TRUE	0	0	0	518	0	FALSE	ACH-000639
NCIH211_LUNG	CMTM4--CCDC79	26	2	CMTM4	1368	chr16:66730243:-	CCDC79	18754	chr16:66824922:-	ONLY_REF_SPLICE	YES	35	0	0.44	1	0.2647	0.0204	LOCAL_REARRANGEMENT:-:[58269],CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,CCDC79->chr16:66788879-66835523:-,coiled-coil_domain_containing_79	NCIH211_LUNG	0.44	1	0.2851	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	MT-ND6--MT-TE	25	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2546	0.0407	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH211_LUNG	0.97	1	0.2953	FALSE	499	1288	110	792	0	FALSE	ACH-000639
NCIH211_LUNG	RP11-123O10.4--GRIP1	24	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2444	0.0407	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH211_LUNG	1	1	0.2851	FALSE	416	2512	207	587	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND6--MT-TE	23	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2342	0.0509	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH211_LUNG	0.97	1	0.2851	FALSE	499	1288	110	792	0	FALSE	ACH-000639
NCIH211_LUNG	HSP90AB1--MT-RNR2	21	6	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3532	0	0.01	1	0.2138	0.0611	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH211_LUNG	0.01	1	0.2749	FALSE	13	9	0	364	0	FALSE	ACH-000639
NCIH211_LUNG	NUMA1--TTC28	12	38	NUMA1	5329	chr11:71779151:-	TTC28	56795	chr22:28492396:-	ONLY_REF_SPLICE	YES	183	6	0.21	0.89	0.1222	0.3869	NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28	NCIH211_LUNG	0.21	0.89	0.5091	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	WDPCP--RP5-1198O20.4	17	10	WDPCP	11021	chr2:63714581:-	RP5-1198O20.4	49802	chr1:44526804:+	ONLY_REF_SPLICE	YES	17	0	0.61	1	0.1731	0.1018	WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-,RP5-1198O20.4->chr1:44501798-44570647:+	NCIH211_LUNG	0.61	1	0.2749	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	CTD-2008L17.1--RP11-456O19.2	16	9	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	12	2	0.68	0.93	0.1629	0.0916	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH211_LUNG	0.68	0.93	0.2545	FALSE	33	240	4	98	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND6--MT-TE	16	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	28	0	0.47	1	0.1629	0.0916	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH211_LUNG	0.47	1	0.2545	FALSE	499	1288	110	792	0	FALSE	ACH-000639
NCIH211_LUNG	MT-CO3--MT-ATP6	3	49	MT-CO3	1639	chrM:9845:+	MT-ATP6	4731	chrM:8473:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0.4989	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH211_LUNG	1	1	0.5294	FALSE	189	492	56	216	0	FALSE	ACH-000639
NCIH211_LUNG	EEPD1--CAMK2B	14	3	EEPD1	3054	chr7:36194811:+	CAMK2B	19915	chr7:44323824:-	ONLY_REF_SPLICE	YES	37	1	0.31	0.94	0.1426	0.0305	EEPD1->chr7:36192758-36341152:+,endonuclease/exonuclease/phosphatase_family_domain_containing_1,CAMK2B->Oncogene{Bushman},calcium/calmodulin_dependent_protein_kinase_II_beta,chr7:44256749-44374176:-	NCIH211_LUNG	0.31	0.94	0.1731	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	3	45	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	24	0	0.67	1	0.0305	0.4582	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0.67	1	0.4887	FALSE	344	826	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	6	31	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1148	0	0.03	1	0.0611	0.3156	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0.03	1	0.3767	FALSE	344	827	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	MT-CO3--MT-ATP6	5	33	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	1	2	0.97	0.95	0.0509	0.336	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH211_LUNG	0.95	0.97	0.3869	FALSE	189	492	56	216	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	5	32	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	9458	0	0	1	0.0509	0.3258	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0	1	0.3767	FALSE	344	827	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	HSP90AB1--MT-RNR2	11	6	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3548	0	0	1	0.112	0.0611	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH211_LUNG	0	1	0.1731	FALSE	13	9	0	364	0	FALSE	ACH-000639
NCIH211_LUNG	PCAT1--RP11-382A18.2	11	5	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	5	0	0.76	1	0.112	0.0509	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	NCIH211_LUNG	0.76	1	0.1629	TRUE	4	84	1	46	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	4	31	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	66	0	0.35	1	0.0407	0.3156	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0.35	1	0.3563	FALSE	344	827	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	4	31	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	588	0	0.06	1	0.0407	0.3156	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0.06	1	0.3563	FALSE	344	827	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	MT-TA--MT-TC	8	15	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0815	0.1527	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH211_LUNG	1	1	0.2342	FALSE	462	80	0	856	0	FALSE	ACH-000639
NCIH211_LUNG	NUMA1--TTC28	2	39	NUMA1	10505	chr11:71761708:-	TTC28	56795	chr22:28492396:-	ONLY_REF_SPLICE	YES	186	6	0.18	0.87	0.0204	0.3971	NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28	NCIH211_LUNG	0.18	0.87	0.4175	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	3	32	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	22	0	0.61	1	0.0305	0.3258	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0.61	1	0.3563	FALSE	344	826	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	3	31	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	19	0	0.64	1	0.0305	0.3156	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0.64	1	0.3461	FALSE	344	826	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	RP11-476K15.1--CTD-2015H3.2	9	7	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	42	1	0.28	0.94	0.0916	0.0713	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCIH211_LUNG	0.28	0.94	0.1629	FALSE	0	46	0	73	0	FALSE	ACH-000639
NCIH211_LUNG	NDUFA4--PHF14	10	2	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	1414	209	0.01	0.05	0.1018	0.0204	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH211_LUNG	0.01	0.05	0.1222	TRUE	19	32	3	60	0	FALSE	ACH-000639
NCIH211_LUNG	PTPN12--CCDC146	2	34	PTPN12	1832	chr7:77167423:+	CCDC146	31352	chr7:76866264:+	ONLY_REF_SPLICE	YES	17	0	0.68	1	0.0204	0.3462	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	NCIH211_LUNG	0.68	1	0.3666	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	HNRNPA3--AGPS	7	13	HNRNPA3	8713	chr2:178086861:+	AGPS	34005	chr2:178402802:+	INCL_NON_REF_SPLICE	YES	160	64	0.11	0.24	0.0713	0.1324	HNRNPA3->Oncogene{Bushman},chr2:178077291-178088686:+,heterogeneous_nuclear_ribonucleoprotein_A3,AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+	NCIH211_LUNG	0.11	0.24	0.2037	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	MT-ND6--MT-TE	6	17	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	27	0	0.46	1	0.0611	0.1731	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH211_LUNG	0.46	1	0.2342	FALSE	499	1288	110	792	0	FALSE	ACH-000639
NCIH211_LUNG	MT-CO3--MT-ATP6	10	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1018	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH211_LUNG	1	1	0.1018	FALSE	189	492	56	216	0	FALSE	ACH-000639
NCIH211_LUNG	MT-TA--MT-TC	10	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1018	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH211_LUNG	1	1	0.1018	FALSE	462	80	0	856	0	FALSE	ACH-000639
NCIH211_LUNG	C15orf57--CBX3	8	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	9	67	0.62	0.18	0.0815	0.0713	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH211_LUNG	0.18	0.62	0.1528	TRUE	267	562	48	632	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	3	27	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	23	0	0.57	1	0.0305	0.2749	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0.57	1	0.3054	FALSE	344	826	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND6--MT-TE	7	11	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0713	0.112	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH211_LUNG	0.95	1	0.1833	FALSE	499	1288	110	792	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND6--MT-TE	7	11	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0713	0.112	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH211_LUNG	0.95	1	0.1833	FALSE	499	1288	110	792	0	FALSE	ACH-000639
NCIH211_LUNG	MT-TA--MT-TC	4	23	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0.2342	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH211_LUNG	1	1	0.2749	FALSE	462	80	0	856	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	6	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	74	0	0.2	1	0.0611	0.1324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0.2	1	0.1935	FALSE	344	827	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	CTD-2008L17.1--RP11-456O19.2	2	28	CTD-2008L17.1	3828	chr18:53685010:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.0204	0.2851	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH211_LUNG	0.97	1	0.3055	FALSE	1	24	0	14	0	FALSE	ACH-000639
NCIH211_LUNG	NPM1P24--SET	9	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0916	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH211_LUNG	1	1	0.0916	TRUE	0	0	0	434	0	FALSE	ACH-000639
NCIH211_LUNG	RTN4--KDM3A	8	3	RTN4	16142	chr2:55209651:-	KDM3A	26607	chr2:86676930:+	ONLY_REF_SPLICE	YES	415	54	0.03	0.17	0.0815	0.0305	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,KDM3A->Oncogene{Bushman},chr2:86667770-86719839:+,lysine_demethylase_3A	NCIH211_LUNG	0.03	0.17	0.112	TRUE	0	0	0	1	0	FALSE	ACH-000639
NCIH211_LUNG	RP11-603B24.1--HERC2P3	6	10	RP11-603B24.1	2375	chr15:22570820:+	HERC2P3	31465	chr15:20588709:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0.1018	GTEx_FI:{Testis=[count:30=pct:28.6]},RP11-603B24.1->chr15:22566922-22570823:+,HERC2P3->chr15:20587869-20711433:-,hect_domain_and_RLD_2_pseudogene_3	NCIH211_LUNG	1	1	0.1629	TRUE	27	10	1	20	0	FALSE	ACH-000639
NCIH211_LUNG	CASC9--RP11-300E4.2	8	1	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	42	0	0.18	1	0.0815	0.0102	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	NCIH211_LUNG	0.18	1	0.0917	TRUE	0	23	0	19	23	TRUE	ACH-000639
NCIH211_LUNG	RTN4--KDM3A	6	6	RTN4	16142	chr2:55209651:-	KDM3A	24090	chr2:86669141:+	ONLY_REF_SPLICE	YES	415	24	0.03	0.33	0.0611	0.0611	RTN4->Oncogene{Bushman},chr2:55199325-55339757:-,reticulon_4,KDM3A->Oncogene{Bushman},chr2:86667770-86719839:+,lysine_demethylase_3A	NCIH211_LUNG	0.03	0.33	0.1222	TRUE	0	0	0	1	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	4	13	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	33	0	0.34	1	0.0407	0.1324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0.34	1	0.1731	FALSE	344	827	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND6--MT-TE	5	9	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	29	0	0.33	1	0.0509	0.0916	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH211_LUNG	0.33	1	0.1425	FALSE	499	1288	110	792	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ATP6--MT-CO1	7	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0713	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH211_LUNG	1	1	0.0713	FALSE	183	104	9	328	0	FALSE	ACH-000639
NCIH211_LUNG	RP11-476K15.1--CTD-2015H3.2	5	8	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	42	0	0.24	1	0.0509	0.0815	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCIH211_LUNG	0.24	1	0.1324	FALSE	0	46	0	73	0	FALSE	ACH-000639
NCIH211_LUNG	MT-CO3--MT-ATP6	6	3	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	4	0	0.69	1	0.0611	0.0305	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH211_LUNG	0.69	1	0.0916	FALSE	189	492	56	216	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND6--MT-TE	3	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0305	0.1426	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH211_LUNG	0.94	1	0.1731	FALSE	499	1288	110	792	0	FALSE	ACH-000639
NCIH211_LUNG	IL1RAPL2--NRK	6	1	IL1RAPL2	4112	chrX:104440430:+	NRK	40384	chrX:105178250:+	ONLY_REF_SPLICE	YES	0	119	1	0.06	0.0611	0.0102	NEIGHBORS[54714],IL1RAPL2->chrX:103810996-105011822:+,interleukin_1_receptor_accessory_protein_like_2,NRK->Nik_related_kinase,chrX:105066536-105202602:+	NCIH211_LUNG	0.06	1	0.0713	FALSE	0	0	0	1	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	3	13	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	24	0	0.4	1	0.0305	0.1324	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	0.4	1	0.1629	FALSE	344	826	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	TTC28--NUMA1	5	5	TTC28	13871	chr22:28497159:-	NUMA1	55011	chr11:71747021:-	ONLY_REF_SPLICE	YES	14	194	0.42	0.05	0.0509	0.0509	TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28,NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1	NCIH211_LUNG	0.05	0.42	0.1018	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	MT-CO3--MT-ATP6	6	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0611	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH211_LUNG	1	1	0.0611	FALSE	189	492	56	216	0	FALSE	ACH-000639
NCIH211_LUNG	EEPD1--CAMK2B	5	2	EEPD1	3054	chr7:36194811:+	CAMK2B	24874	chr7:44302663:-	ONLY_REF_SPLICE	YES	37	1	0.16	0.88	0.0509	0.0204	EEPD1->chr7:36192758-36341152:+,endonuclease/exonuclease/phosphatase_family_domain_containing_1,CAMK2B->Oncogene{Bushman},calcium/calmodulin_dependent_protein_kinase_II_beta,chr7:44256749-44374176:-	NCIH211_LUNG	0.16	0.88	0.0713	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	ANTXR1--LRRTM4	4	5	ANTXR1	10416	chr2:69318051:+	LRRTM4	40299	chr2:76976042:-	ONLY_REF_SPLICE	YES	6	0	0.6	1	0.0407	0.0509	ANTXR1->anthrax_toxin_receptor_1,chr2:69240310-69476459:+,LRRTM4->chr2:76974845-77820445:-,leucine_rich_repeat_transmembrane_neuronal_4	NCIH211_LUNG	0.6	1	0.0916	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	KANSL1--ARL17B	2	11	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	82	131	0.14	0.09	0.0204	0.112	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	NCIH211_LUNG	0.09	0.14	0.1324	TRUE	105	90	7	93	0	FALSE	ACH-000639
NCIH211_LUNG	MAF--RP11-679B19.2	4	2	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0.0204	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	NCIH211_LUNG	1	1	0.0611	TRUE	48	25	3	38	0	FALSE	ACH-000639
NCIH211_LUNG	MAML2--MTMR2	4	1	MAML2	2798	chr11:96074547:-	MTMR2	23526	chr11:95598840:-	ONLY_REF_SPLICE	YES	45	808	0.1	0.01	0.0407	0.0102	NEIGHBORS[51283],MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,MTMR2->chr11:95566046-95658479:-,myotubularin_related_protein_2	NCIH211_LUNG	0.01	0.1	0.0509	FALSE	0	1	0	2	0	FALSE	ACH-000639
NCIH211_LUNG	TTC28--NUMA1	3	5	TTC28	15001	chr22:28494903:-	NUMA1	55011	chr11:71747021:-	ONLY_REF_SPLICE	YES	7	194	0.53	0.04	0.0305	0.0509	TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28,NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1	NCIH211_LUNG	0.04	0.53	0.0814	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	C15orf57--CBX3	3	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	9	68	0.44	0.09	0.0305	0.0407	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH211_LUNG	0.09	0.44	0.0712	TRUE	267	562	48	632	0	FALSE	ACH-000639
NCIH211_LUNG	C6orf106--NQO2	3	4	C6orf106	3690	chr6:34622402:-	NQO2	16276	chr6:2994165:+	ONLY_REF_SPLICE	YES	120	0	0.06	1	0.0305	0.0407	C6orf106->chr6:34555065-34664636:-,chromosome_6_open_reading_frame_106,NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+	NCIH211_LUNG	0.06	1	0.0712	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH211_LUNG	1	1	0.0407	FALSE	183	104	9	328	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH211_LUNG	1	1	0.0407	FALSE	183	104	9	328	0	FALSE	ACH-000639
NCIH211_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH211_LUNG	1	1	0.0407	FALSE	189	492	56	216	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND3--MT-ATP8	4	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH211_LUNG	1	1	0.0407	FALSE	351	233	23	137	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND3--MT-ATP8	4	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0407	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH211_LUNG	1	1	0.0407	FALSE	351	233	23	137	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND6--MT-TE	3	4	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	5	0	0.58	1	0.0305	0.0407	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH211_LUNG	0.58	1	0.0712	FALSE	499	1288	110	792	0	FALSE	ACH-000639
NCIH211_LUNG	NUMA1--TTC28	4	0	NUMA1	1236	chr11:71791504:-	TTC28	56795	chr22:28492396:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0407	0	NUMA1->Oncogene{Bushman},chr11:71713910-71791739:-,nuclear_mitotic_apparatus_protein_1,TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28	NCIH211_LUNG	1	1	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	AC074363.1--STK39	1	11	AC074363.1	2265	chr2:168346787:+	STK39	12797	chr2:168997268:-	ONLY_REF_SPLICE	YES	6	226	0.67	0.05	0.0102	0.112	AC074363.1->chr2:168149681-168414843:+,STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39	NCIH211_LUNG	0.05	0.67	0.1222	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	MT-ATP6--MT-CO1	3	3	MT-ATP6	1265	chrM:8791:+	MT-CO1	4998	chrM:6220:+	INCL_NON_REF_SPLICE	YES	13583	15196	0	0	0.0305	0.0305	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH211_LUNG	0	0	0.061	FALSE	183	104	9	328	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	3	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0.0204	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	1	1	0.0509	FALSE	344	821	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	RP11-444D3.1--SOX5	3	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0.0204	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	NCIH211_LUNG	1	1	0.0509	TRUE	477	1352	189	275	0	FALSE	ACH-000639
NCIH211_LUNG	WDPCP--RP5-1198O20.4	2	6	WDPCP	11021	chr2:63714581:-	RP5-1198O20.4	53078	chr1:44541763:+	ONLY_REF_SPLICE	YES	17	2	0.32	0.8	0.0204	0.0611	WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-,RP5-1198O20.4->chr1:44501798-44570647:+	NCIH211_LUNG	0.32	0.8	0.0815	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	AC074363.1--B3GALT1	1	9	AC074363.1	2265	chr2:168346787:+	B3GALT1	6463	chr2:168675182:+	ONLY_REF_SPLICE	YES	6	0	0.62	1	0.0102	0.0916	AC074363.1->chr2:168149681-168414843:+,B3GALT1->beta-1,3-galactosyltransferase_1,chr2:168675182-168730551:+	NCIH211_LUNG	0.62	1	0.1018	TRUE	0	4	2	6	4	TRUE	ACH-000639
NCIH211_LUNG	AC074363.1--STK39	2	5	AC074363.1	2265	chr2:168346787:+	STK39	23314	chr2:168821236:-	ONLY_REF_SPLICE	YES	6	211	0.54	0.03	0.0204	0.0509	AC074363.1->chr2:168149681-168414843:+,STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39	NCIH211_LUNG	0.03	0.54	0.0713	TRUE	0	0	0	1	0	FALSE	ACH-000639
NCIH211_LUNG	AC074363.1--STK39	2	5	AC074363.1	2265	chr2:168346787:+	STK39	21192	chr2:168873605:-	ONLY_REF_SPLICE	YES	6	264	0.54	0.03	0.0204	0.0509	AC074363.1->chr2:168149681-168414843:+,STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39	NCIH211_LUNG	0.03	0.54	0.0713	TRUE	0	0	0	1	0	FALSE	ACH-000639
NCIH211_LUNG	PTMAP5--RAD21	3	1	PTMAP5	1377	chr13:82264422:+	RAD21	18620	chr8:117861270:-	INCL_NON_REF_SPLICE	YES	105	1568	0.04	0	0.0305	0.0102	PTMAP5->chr13:82264046-82265207:+,prothymosin,_alpha_pseudogene_5,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-	NCIH211_LUNG	0	0.04	0.0407	FALSE	0	0	0	1	0	FALSE	ACH-000639
NCIH211_LUNG	PTMAP5--RAD21	3	1	PTMAP5	1384	chr13:82264429:+	RAD21	18627	chr8:117861263:-	INCL_NON_REF_SPLICE	YES	86	1355	0.04	0	0.0305	0.0102	PTMAP5->chr13:82264046-82265207:+,prothymosin,_alpha_pseudogene_5,RAD21->RAD21_cohesin_complex_component,chr8:117858174-117887105:-	NCIH211_LUNG	0	0.04	0.0407	FALSE	0	0	0	1	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH211_LUNG	1	1	0.0305	FALSE	183	104	9	328	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH211_LUNG	1	1	0.0305	FALSE	344	821	44	306	0	FALSE	ACH-000639
NCIH211_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0305	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH211_LUNG	1	1	0.0305	FALSE	499	1288	110	792	0	FALSE	ACH-000639
NCIH211_LUNG	NDUFA4--PHF14	2	2	NDUFA4	1241	chr7:10979643:-	PHF14	11207	chr7:11021999:+	ONLY_REF_SPLICE	YES	1414	418	0	0.01	0.0204	0.0204	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH211_LUNG	0	0.01	0.0408	FALSE	0	2	0	1	0	FALSE	ACH-000639
NCIH211_LUNG	VWDE--PHF14	2	1	VWDE	1283	chr7:12443285:-	PHF14	59389	chr7:11150977:+	ONLY_REF_SPLICE	YES	74	209	0.04	0.01	0.0204	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH211_LUNG	0.01	0.04	0.0306	FALSE	0	6	0	17	2	FALSE	ACH-000639
NCIH211_LUNG	WDPCP--KLF17	2	1	WDPCP	9973	chr2:63719990:-	KLF17	42690	chr1:44595025:+	ONLY_REF_SPLICE	YES	16	0	0.16	1	0.0204	0.0102	WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-,KLF17->Kruppel-like_factor_17,chr1:44584522-44600812:+	NCIH211_LUNG	0.16	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	AC074363.1--STK39	1	4	AC074363.1	1164	chr2:168149844:+	STK39	23314	chr2:168821236:-	ONLY_REF_SPLICE	YES	9	211	0.36	0.02	0.0102	0.0407	AC074363.1->chr2:168149681-168414843:+,STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39	NCIH211_LUNG	0.02	0.36	0.0509	TRUE	0	0	0	1	0	FALSE	ACH-000639
NCIH211_LUNG	C6orf106--NQO2	2	0	C6orf106	4888	chr6:34614378:-	NQO2	22111	chr6:3006702:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	C6orf106->chr6:34555065-34664636:-,chromosome_6_open_reading_frame_106,NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	CMTM4--CCDC79	2	0	CMTM4	1281	chr16:66730330:-	CCDC79	18754	chr16:66824922:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_REARRANGEMENT:-:[58269],CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,CCDC79->chr16:66788879-66835523:-,coiled-coil_domain_containing_79	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	CMTM4--CCDC79	2	0	CMTM4	1368	chr16:66730243:-	CCDC79	19050	chr16:66824626:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_REARRANGEMENT:-:[58269],CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,CCDC79->chr16:66788879-66835523:-,coiled-coil_domain_containing_79	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	CPQ--AB015752.3	2	0	CPQ	9826	chr8:97892233:+	AB015752.3	26928	chr8:91546854:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,AB015752.3->chr8:91546839-91632298:-	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	CPSF6--CASZ1	2	0	CPSF6	11046	chr12:69656342:+	CASZ1	48556	chr1:10697465:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:9=pct:2.9],Lung=[count:2=pct:1.2],Salivary_Gland=[count:1=pct:2.6],Colon=[count:1=pct:0.5]},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CASZ1->castor_zinc_finger_1,chr1:10696661-10856707:-	NCIH211_LUNG	1	1	0.0204	TRUE	13	7	1	2	0	FALSE	ACH-000639
NCIH211_LUNG	CTD-2017D11.1--RPL23	2	0	CTD-2017D11.1	3885	chr19:24232350:+	RPL23	12091	chr17:37008985:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CTD-2017D11.1->chr19:24216247-24249711:+,RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	DCK--GRSF1	2	0	DCK	3596	chr4:71863899:+	GRSF1	16290	chr4:71702031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,DCK->chr4:71858255-71896631:+,deoxycytidine_kinase,GRSF1->G-rich_RNA_sequence_binding_factor_1,chr4:71681499-71705662:-	NCIH211_LUNG	1	1	0.0204	TRUE	0	4	0	2	2	TRUE	ACH-000639
NCIH211_LUNG	FNBP4--NUP160	2	0	FNBP4	2468	chr11:47786822:-	NUP160	29772	chr11:47859175:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_REARRANGEMENT:-:[10644],FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,NUP160->chr11:47799639-47870107:-,nucleoporin_160kDa	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	6	0	TRUE	ACH-000639
NCIH211_LUNG	RP11-108K3.1--GLDN	2	0	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	NCIH211_LUNG	1	1	0.0204	FALSE	1	20	0	46	0	FALSE	ACH-000639
NCIH211_LUNG	RP11-120D5.1--MID1	2	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH211_LUNG	1	1	0.0204	FALSE	0	48	1	163	0	FALSE	ACH-000639
NCIH211_LUNG	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH211_LUNG	1	1	0.0204	FALSE	515	4851	409	746	0	FALSE	ACH-000639
NCIH211_LUNG	SHISA9--CPPED1	2	0	SHISA9	7683	chr16:13010672:+	CPPED1	23150	chr16:12798906:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_INVERSION:+:-:[97603],SHISA9->chr16:12995477-13334272:+,shisa_family_member_9,CPPED1->calcineurin_like_phosphoesterase_domain_containing_1,chr16:12756919-12897874:-	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	TXNIP--RPL23	2	0	TXNIP	1584	chr1:145439052:+	RPL23	8906	chr17:37009358:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx&tcga_normals:1/3694=0.03%,TXNIP->chr1:145438469-145442635:+,thioredoxin_interacting_protein,RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	ZNF316--GLCCI1	2	0	ZNF316	1688	chr7:6677640:+	GLCCI1	15590	chr7:8043538:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	ZNF316->chr7:6676953-6694242:+,zinc_finger_protein_316,GLCCI1->chr7:8008425-8133902:+,glucocorticoid_induced_1	NCIH211_LUNG	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	WDPCP--RP5-1198O20.4	1	3	WDPCP	9973	chr2:63719990:-	RP5-1198O20.4	51952	chr1:44540510:+	ONLY_REF_SPLICE	YES	16	1	0.2	0.8	0.0102	0.0305	WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-,RP5-1198O20.4->chr1:44501798-44570647:+	NCIH211_LUNG	0.2	0.8	0.0407	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	C9orf3--SNAP91	1	2	C9orf3	3136	chr9:97523015:+	SNAP91	44165	chr6:84400155:-	ONLY_REF_SPLICE	YES	0	5	1	0.38	0.0102	0.0204	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	NCIH211_LUNG	0.38	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	C9orf3--SNAP91	1	2	C9orf3	3136	chr9:97523015:+	SNAP91	48885	chr6:84375300:-	ONLY_REF_SPLICE	YES	0	4	1	0.43	0.0102	0.0204	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	NCIH211_LUNG	0.43	1	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	C9orf3--SNAP91	1	2	C9orf3	2983	chr9:97522862:+	SNAP91	48885	chr6:84375300:-	ONLY_REF_SPLICE	YES	1	4	0.75	0.43	0.0102	0.0204	C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,SNAP91->chr6:84262599-84419410:-,synaptosome_associated_protein_91kDa	NCIH211_LUNG	0.43	0.75	0.0306	TRUE	0	0	0	1	0	TRUE	ACH-000639
NCIH211_LUNG	CERS6--STK39	1	2	CERS6	5052	chr2:169487552:+	STK39	32157	chr2:168931741:-	ONLY_REF_SPLICE	NO	497	195	0.01	0.02	0.0102	0.0204	GTEx_v2:{count=5;pct=0.06%;dist=Vagina=1,Cervix_-_Ectocervix=1,Adipose_-_Subcutaneous=1,Whole_Blood=1,Colon_-_Transverse=1},CERS6->ceramide_synthase_6,chr2:169312372-169631644:+,STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39	NCIH211_LUNG	0.01	0.02	0.0306	FALSE	0	1	0	2	0	FALSE	ACH-000639
NCIH211_LUNG	MAF--RP11-679B19.2	1	2	MAF	2930	chr16:79632682:-	RP11-679B19.2	13121	chr16:79246798:-	ONLY_REF_SPLICE	YES	156	0	0.02	1	0.0102	0.0204	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	NCIH211_LUNG	0.02	1	0.0306	TRUE	11	11	0	4	0	FALSE	ACH-000639
NCIH211_LUNG	MAML2--MTMR2	1	2	MAML2	5424	chr11:95825056:-	MTMR2	23526	chr11:95598840:-	ONLY_REF_SPLICE	YES	95	808	0.03	0	0.0102	0.0204	NEIGHBORS[51283],MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,MTMR2->chr11:95566046-95658479:-,myotubularin_related_protein_2	NCIH211_LUNG	0	0.03	0.0306	FALSE	0	1	0	3	0	FALSE	ACH-000639
NCIH211_LUNG	NDUFA4--PHF14	1	2	NDUFA4	2449	chr7:10978435:-	PHF14	12995	chr7:11030330:+	ONLY_REF_SPLICE	YES	4109	492	0	0.01	0.0102	0.0204	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH211_LUNG	0	0.01	0.0306	FALSE	0	0	0	1	0	FALSE	ACH-000639
NCIH211_LUNG	NDUFA4--PHF14	1	2	NDUFA4	1241	chr7:10979643:-	PHF14	14140	chr7:11053374:+	ONLY_REF_SPLICE	YES	1414	551	0	0.01	0.0102	0.0204	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH211_LUNG	0	0.01	0.0306	FALSE	0	1	0	1	0	FALSE	ACH-000639
NCIH211_LUNG	NRXN3--CEP128	1	2	NRXN3	38705	chr14:80271542:+	CEP128	76757	chr14:81046767:-	ONLY_REF_SPLICE	YES	232	43	0.01	0.07	0.0102	0.0204	NRXN3->chr14:78708734-80330762:+,neurexin_3,CEP128->centrosomal_protein_128,chr14:80943330-81425861:-	NCIH211_LUNG	0.01	0.07	0.0306	FALSE	0	0	0	1	0	FALSE	ACH-000639
NCIH211_LUNG	NRXN3--CEP128	1	2	NRXN3	27051	chr14:79746881:+	CEP128	76757	chr14:81046767:-	ONLY_REF_SPLICE	YES	178	43	0.02	0.07	0.0102	0.0204	NRXN3->chr14:78708734-80330762:+,neurexin_3,CEP128->centrosomal_protein_128,chr14:80943330-81425861:-	NCIH211_LUNG	0.02	0.07	0.0306	TRUE	0	0	0	1	0	FALSE	ACH-000639
NCIH211_LUNG	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	NO	0	1	1	0.75	0.0102	0.0204	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH211_LUNG	0.75	1	0.0306	TRUE	62	24	1	171	0	FALSE	ACH-000639
NCIH211_LUNG	ATL2--HNRNPLL	1	1	ATL2	6688	chr2:38570410:-	HNRNPLL	25875	chr2:38818790:-	ONLY_REF_SPLICE	YES	600	195	0	0.01	0.0102	0.0102	GTEx_v2:{count=4;pct=0.05%;dist=Stomach=1,Thyroid=1,Uterus=1,Brain_-_Caudate_(basal_ganglia)=1},ATL2->atlastin_GTPase_2,chr2:38522022-38604427:-,HNRNPLL->chr2:38789120-38830728:-,heterogeneous_nuclear_ribonucleoprotein_L_like	NCIH211_LUNG	0	0.01	0.0204	FALSE	0	5	0	8	2	FALSE	ACH-000639
NCIH211_LUNG	DBR1--FAIM	1	1	DBR1	2448	chr3:137892344:-	FAIM	19588	chr3:138347949:+	ONLY_REF_SPLICE	YES	57	78	0.03	0.03	0.0102	0.0102	DBR1->chr3:137879854-137893791:-,debranching_RNA_lariats_1,FAIM->Fas_apoptotic_inhibitory_molecule,Oncogene{Bushman},chr3:138327448-138352218:+	NCIH211_LUNG	0.03	0.03	0.0204	TRUE	0	0	0	1	0	FALSE	ACH-000639
NCIH211_LUNG	DLG1--TFRC	1	1	DLG1	18737	chr3:196857398:-	TFRC	44967	chr3:195803993:-	ONLY_REF_SPLICE	YES	329	22	0.01	0.08	0.0102	0.0102	DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component,TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor	NCIH211_LUNG	0.01	0.08	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000639
NCIH211_LUNG	FRS2--RAB3IP	1	1	FRS2	1182	chr12:69864310:+	RAB3IP	25899	chr12:70149164:+	ONLY_REF_SPLICE	YES	54	199	0.04	0.01	0.0102	0.0102	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	NCIH211_LUNG	0.01	0.04	0.0204	FALSE	0	2	0	3	1	FALSE	ACH-000639
NCIH211_LUNG	KIAA1731--WHSC1	1	1	KIAA1731	21008	chr11:93454578:+	WHSC1	69140	chr4:1976590:+	ONLY_REF_SPLICE	YES	70	305	0.03	0.01	0.0102	0.0102	KIAA1731->chr11:93394805-93463522:+,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH211_LUNG	0.01	0.03	0.0204	FALSE	0	0	0	2	0	FALSE	ACH-000639
NCIH211_LUNG	MAML2--MTMR2	1	1	MAML2	2798	chr11:96074547:-	MTMR2	17731	chr11:95647476:-	ONLY_REF_SPLICE	YES	45	809	0.04	0	0.0102	0.0102	NEIGHBORS[51283],MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,MTMR2->chr11:95566046-95658479:-,myotubularin_related_protein_2	NCIH211_LUNG	0	0.04	0.0204	FALSE	0	0	0	2	0	FALSE	ACH-000639
NCIH211_LUNG	MAML2--MTMR2	1	1	MAML2	2798	chr11:96074547:-	MTMR2	19941	chr11:95621425:-	ONLY_REF_SPLICE	YES	45	1049	0.04	0	0.0102	0.0102	NEIGHBORS[51283],MAML2->Oncogene{Bushman},chr11:95709762-96076344:-,mastermind_like_transcriptional_coactivator_2,MTMR2->chr11:95566046-95658479:-,myotubularin_related_protein_2	NCIH211_LUNG	0	0.04	0.0204	FALSE	0	1	0	2	0	FALSE	ACH-000639
NCIH211_LUNG	PCAT1--PVT1	1	1	PCAT1	2153	chr8:127890035:+	PVT1	17836	chr8:128902835:+	ONLY_REF_SPLICE	YES	2	234	0.5	0.01	0.0102	0.0102	PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	NCIH211_LUNG	0.01	0.5	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000639
NCIH211_LUNG	PINX1--RP1L1	1	1	PINX1	6234	chr8:10683662:-	RP1L1	17312	chr8:10480730:-	ONLY_REF_SPLICE	YES	206	0	0.01	1	0.0102	0.0102	NEIGHBORS[52776],PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	NCIH211_LUNG	0.01	1	0.0204	FALSE	1	8	0	15	0	FALSE	ACH-000639
NCIH211_LUNG	PTPN12--CCDC146	1	1	PTPN12	1371	chr7:77166962:+	CCDC146	39843	chr7:76903011:+	ONLY_REF_SPLICE	YES	6	81	0.25	0.02	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Stomach=1},PTPN12->chr7:77166592-77269388:+,protein_tyrosine_phosphatase,_non-receptor_type_12,CCDC146->chr7:76751751-76958850:+,coiled-coil_domain_containing_146	NCIH211_LUNG	0.02	0.25	0.0204	TRUE	0	1	0	1	1	FALSE	ACH-000639
NCIH211_LUNG	RP1-34H18.1--NAV3	1	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0102	0.0102	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH211_LUNG	1	1	0.0204	TRUE	254	575	65	124	0	FALSE	ACH-000639
NCIH211_LUNG	SCARB1--UBC	1	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	73	12	0.03	0.14	0.0102	0.0102	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH211_LUNG	0.03	0.14	0.0204	TRUE	55	66	6	101	0	FALSE	ACH-000639
NCIH211_LUNG	SCARB1--UBC	1	1	SCARB1	10920	chr12:125298748:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	183	12	0.01	0.14	0.0102	0.0102	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH211_LUNG	0.01	0.14	0.0204	FALSE	1	0	0	5	0	FALSE	ACH-000639
NCIH211_LUNG	VWDE--PHF14	1	1	VWDE	1283	chr7:12443285:-	PHF14	38736	chr7:11030330:+	ONLY_REF_SPLICE	YES	74	492	0.03	0	0.0102	0.0102	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},VWDE->chr7:12370511-12443567:-,von_Willebrand_factor_D_and_EGF_domains,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH211_LUNG	0	0.03	0.0204	FALSE	0	0	0	1	0	FALSE	ACH-000639
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	918	132	IGH@	93981	chr14:106330797:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	YES	1	23	1	0.98	7.9424	1.142	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.98	1	9.0844	TRUE	0	0	0	3	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	246	207	IGH@	95370	chr14:106329408:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	YES	1	23	1	0.95	2.1284	1.7909	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	3.9193	TRUE	0	0	0	3	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	100	145	IGH@	94353	chr14:106330425:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	YES	1	23	1	0.91	0.8652	1.2545	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	2.1197	TRUE	0	0	0	3	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	95	153	IGH@	94754	chr14:106330024:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	YES	1	23	1	0.92	0.8219	1.3237	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	2.1456	TRUE	0	0	0	3	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	99	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8565	0.0952	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.9517	TRUE	508	994	45	981	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	94	13	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	7	0	0.94	1	0.8133	0.1125	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.9258	TRUE	0	5	0	45	5	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	89	18	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.77	0.1557	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	0.9257	FALSE	33	240	4	98	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCO2--CHKB	68	33	SCO2	3704	chr22:50962148:-	CHKB	10590	chr22:51019000:-	INCL_NON_REF_SPLICE	YES	51	55	0.66	0.65	0.5883	0.2855	LOCAL_REARRANGEMENT:-:[52510],SCO2->SCO2_cytochrome_c_oxidase_assembly_protein,chr22:50961997-50964868:-,CHKB->choline_kinase_beta,chr22:51017378-51039884:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.65	0.66	0.8738	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	67	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	97	5	0.41	0.93	0.5797	0.0087	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.93	0.5884	TRUE	519	3926	326	965	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	65	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5624	0.026	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5884	FALSE	499	1288	110	792	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	30	132	IGH@	93161	chr14:106331617:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	NO	2	23	0.99	0.88	0.2596	1.142	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.99	1.4016	TRUE	0	0	0	3	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCO2--CHKB	45	27	SCO2	3709	chr22:50962143:-	CHKB	10743	chr22:51018847:-	INCL_NON_REF_SPLICE	YES	47	64	0.61	0.53	0.3893	0.2336	LOCAL_REARRANGEMENT:-:[52510],SCO2->SCO2_cytochrome_c_oxidase_assembly_protein,chr22:50961997-50964868:-,CHKB->choline_kinase_beta,chr22:51017378-51039884:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	0.61	0.6229	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	50	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4326	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4326	TRUE	0	0	0	518	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	45	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3893	0.0346	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4239	FALSE	462	80	0	856	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	146	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	18	0	0.89	1	0.026	1.2632	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	1.2892	FALSE	344	826	44	306	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	27	33	IGH@	93981	chr14:106330797:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	1	527	0.98	0.1	0.2336	0.2855	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.98	0.5191	TRUE	0	0	0	5	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	132	IGH@	93369	chr14:106331409:-	WHSC1	139666	chr4:1905943:+	ONLY_REF_SPLICE	NO	2	23	0.99	0.85	0.0087	1.142	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	0.99	1.1507	TRUE	0	0	0	3	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	103	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	4	0	0.96	1	0.0519	0.8911	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.943	FALSE	344	821	44	306	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	30	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2596	0.0346	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2942	FALSE	499	1288	110	792	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	103	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	10	0	0.91	1	0.026	0.8911	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.9171	FALSE	344	826	44	306	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	28	2	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	3136	1	0.01	0.97	0.2423	0.0173	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.97	0.2596	TRUE	0	0	0	100	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CXXC1--MYO5B	28	0	CXXC1	1718	chr18:47813957:-	MYO5B	12667	chr18:47581748:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2423	0	{Klijn_CCL:Lymphoid=1},NEIGHBORS[87250],CXXC1->CXXC_finger_protein_1,chr18:47808713-47814674:-,MYO5B->chr18:47349183-47721463:-,myosin_VB	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2423	FALSE	0	0	0	1	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XPO1--CCT4	24	7	XPO1	10272	chr2:61729131:-	CCT4	35743	chr2:62107529:-	ONLY_REF_SPLICE	YES	79	348	0.28	0.08	0.2076	0.0606	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Lymphoid=1},XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1,CCT4->chaperonin_containing_TCP1_subunit_4,chr2:62095224-62115939:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.28	0.2682	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	19	19	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1644	0.1644	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.3288	FALSE	499	1288	110	792	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	9	50	IGH@	95370	chr14:106329408:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	1	527	0.98	0.1	0.0779	0.4326	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.98	0.5105	TRUE	0	0	0	6	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIPEPP3--ABHD12	21	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1817	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1817	TRUE	64	202	9	44	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	20	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.173	0.026	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.199	FALSE	462	80	0	856	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	19	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1644	0.0173	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1817	FALSE	416	2512	207	587	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	14	16	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1211	0.1384	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2595	TRUE	0	1	0	84	1	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	13	17	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1125	0.1471	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2596	TRUE	0	1	0	84	1	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCO2--CHKB	14	8	SCO2	3705	chr22:50962147:-	CHKB	11648	chr22:51017942:-	INCL_NON_REF_SPLICE	YES	51	103	0.3	0.18	0.1211	0.0692	LOCAL_REARRANGEMENT:-:[52510],SCO2->SCO2_cytochrome_c_oxidase_assembly_protein,chr22:50961997-50964868:-,CHKB->choline_kinase_beta,chr22:51017378-51039884:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.3	0.1903	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	15	1	IGH@	93981	chr14:106330797:-	WHSC1	146292	chr4:1936871:+	ONLY_REF_SPLICE	YES	1	393	0.94	0.04	0.1298	0.0087	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.94	0.1385	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1GALT1C1--DNAH11	14	4	C1GALT1C1	1234	chrX:119763772:-	DNAH11	37720	chr7:21721164:+	ONLY_REF_SPLICE	YES	99	0	0.15	1	0.1211	0.0346	C1GALT1C1->C1GALT1_specific_chaperone_1,chrX:119759648-119764005:-,DNAH11->chr7:21582833-21941457:+,dynein_axonemal_heavy_chain_11	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.1557	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	56	IGH@	95370	chr14:106329408:-	WHSC1	140829	chr4:1913818:+	ONLY_REF_SPLICE	YES	1	561	0.98	0.09	0.0087	0.4845	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.98	0.4932	TRUE	0	0	0	2	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	6	33	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	252	0	0.13	1	0.0519	0.2855	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.3374	FALSE	344	827	44	306	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	42	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.026	0.3634	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.3894	FALSE	344	821	44	306	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	13	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1125	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1125	TRUE	0	0	0	81	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	4	36	IGH@	94754	chr14:106330024:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	1	527	0.98	0.07	0.0346	0.3115	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.98	0.3461	TRUE	0	0	0	6	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	8	18	JSRP1	1225	chr19:2269534:-	RPS28	10773	chr19:8386408:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0692	0.1557	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2249	TRUE	0	1	0	84	1	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	12	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1038	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1038	TRUE	0	0	0	81	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	27	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0346	0.2336	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	0.2682	FALSE	499	1288	110	792	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	2	34	IGH@	94353	chr14:106330425:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	YES	1	527	0.97	0.06	0.0173	0.2942	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.97	0.3115	TRUE	0	0	0	5	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	25	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	7	0	0.81	1	0.0346	0.2163	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	1	0.2509	FALSE	344	826	44	306	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCO2--CHKB	7	10	SCO2	3707	chr22:50962145:-	CHKB	11355	chr22:51018235:-	INCL_NON_REF_SPLICE	YES	49	69	0.26	0.2	0.0606	0.0865	LOCAL_REARRANGEMENT:-:[52510],SCO2->SCO2_cytochrome_c_oxidase_assembly_protein,chr22:50961997-50964868:-,CHKB->choline_kinase_beta,chr22:51017378-51039884:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.26	0.1471	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	33	IGH@	93161	chr14:106331617:-	WHSC1	141933	chr4:1918598:+	ONLY_REF_SPLICE	NO	2	527	0.94	0.06	0.0087	0.2855	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.94	0.2942	TRUE	0	0	0	5	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	21	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	11	0	0.69	1	0.0346	0.1817	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	0.2163	FALSE	344	826	44	306	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	13	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0.1125	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1644	FALSE	499	1288	110	792	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	5	14	AP003900.6	1122	chr21:11169841:+	AC011718.2	10100	chr22:20656924:-	INCL_NON_REF_SPLICE	YES	4	0	0.83	1	0.0433	0.1211	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.1644	TRUE	0	0	0	11	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2008L17.1--RP11-456O19.2	3	21	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.026	0.1817	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.2077	FALSE	20	187	4	79	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	8	1	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	34	13	0.21	0.41	0.0692	0.0087	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.41	0.0779	FALSE	59	21	0	114	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	8	0	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0692	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0692	TRUE	0	3	0	38	3	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC069363.1--AC096579.7	7	3	AC069363.1	8551	chr17:34417372:+	AC096579.7	14555	chr2:89157022:-	INCL_NON_REF_SPLICE	YES	175	7048	0.05	0	0.0606	0.026	AC069363.1->chr17:34400226-34417480:+,AC096579.7->chr2:89130700-89165653:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.05	0.0866	FALSE	0	0	0	3	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	JSRP1--RPS28	3	17	JSRP1	1230	chr19:2269529:-	RPS28	10778	chr19:8386413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0.1471	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1731	TRUE	0	1	0	84	1	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	7	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	6095	1	0	0.89	0.0606	0.0087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.89	0.0693	FALSE	230	193	14	283	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	6	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0519	0.0346	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0865	FALSE	407	2205	196	549	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	6	2	AP003900.6	3299	chr21:11174002:+	AC011718.2	13976	chr22:20645851:-	ONLY_REF_SPLICE	YES	7	14	0.53	0.36	0.0519	0.0173	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.53	0.0692	TRUE	0	1	0	24	1	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	10	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	19	0	0.42	1	0.0346	0.0865	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.1211	FALSE	344	826	44	306	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	4	10	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	23	0	0.38	1	0.0346	0.0865	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.1211	FALSE	344	827	44	306	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	6	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	33	0	0.17	1	0.0519	0.0087	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.0606	FALSE	272	151	14	158	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	6	0	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0519	FALSE	231	217	16	283	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0519	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0519	FALSE	499	1288	110	792	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COMMD1--B3GNT2	5	1	COMMD1	6915	chr2:62228117:+	B3GNT2	17072	chr2:62449347:+	ONLY_REF_SPLICE	YES	30	6	0.17	0.5	0.0433	0.0087	NEIGHBORS[48866],COMMD1->chr2:62115859-62374382:+,copper_metabolism_domain_containing_1,B3GNT2->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_2,chr2:62423248-62451866:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.5	0.052	FALSE	1	6	2	5	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	5	1	IGH@	93981	chr14:106330797:-	WHSC1	145147	chr4:1932353:+	ONLY_REF_SPLICE	YES	1	444	0.86	0.01	0.0433	0.0087	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.86	0.052	FALSE	0	0	0	3	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0433	FALSE	462	80	0	856	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0.0346	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0692	FALSE	462	80	0	856	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	4	3	EEF2	8863	chr19:3977449:-	RPS28	13639	chr19:8386422:+	INCL_NON_REF_SPLICE	YES	2703	0	0	1	0.0346	0.026	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0606	FALSE	0	0	0	100	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	4	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0.026	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0606	FALSE	515	4851	409	746	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	2	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	55	0	0.1	1	0.0346	0.0173	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.0519	TRUE	0	0	0	81	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	4	1	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	16	8	0.24	0.38	0.0346	0.0087	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.38	0.0433	FALSE	59	21	0	114	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	1	MT-ND4	1828	chrM:11587:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	6752	0	0	1	0.0346	0.0087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0433	FALSE	231	217	16	283	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--MT-ND4L	4	0	AC096579.7	4063	chr2:89156855:-	MT-ND4L	8426	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	AC096579.7->chr2:89130700-89165653:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0346	FALSE	0	0	0	1	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP128--SEL1L	4	0	CEP128	13431	chr14:81362062:-	SEL1L	44906	chr14:81994082:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	CEP128->centrosomal_protein_128,chr14:80943330-81425861:-,SEL1L->Oncogene{Bushman},SEL1L_ERAD_E3_ligase_adaptor_subunit,chr14:81937893-82000205:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0346	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0346	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0346	FALSE	499	1288	110	792	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-166B2.1--TNFRSF17	4	0	RP11-166B2.1	2212	chr16:12057748:-	TNFRSF17	15287	chr16:12060052:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0346	0	NEIGHBORS_OVERLAP:-:+:[2961],RP11-166B2.1->chr16:12021230-12070500:-,TNFRSF17->Oncogene{Bushman},chr16:12058964-12061925:+,tumor_necrosis_factor_receptor_superfamily_member_17	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0346	FALSE	0	0	0	3	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	2	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0.0173	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0433	FALSE	462	80	0	856	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO2	3	1	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	24	8	0.14	0.33	0.026	0.0087	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.33	0.0347	FALSE	59	21	0	114	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	7811	0	0	1	0.026	0.0087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0347	FALSE	231	217	16	283	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	1	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	6152	40	0	0.09	0.026	0.0087	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.09	0.0347	FALSE	231	204	14	283	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	0	EIF1	1089	chr17:39845225:+	RPS28	8128	chr19:8386385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	TRUE	0	0	0	81	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	FALSE	344	821	44	306	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ND4L	3	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	FALSE	344	821	44	306	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	FALSE	499	1288	110	792	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	FALSE	499	1288	110	792	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFA4--PHF14	3	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	TRUE	19	32	3	60	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0173	0.026	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0433	FALSE	467	2173	244	435	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC011718.2	1	5	AP003900.6	3299	chr21:11174002:+	AC011718.2	12889	chr22:20650844:-	ONLY_REF_SPLICE	NO	7	0	0.46	1	0.0087	0.0433	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.46	1	0.052	TRUE	0	1	0	20	1	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COMMD1--B3GNT2	2	1	COMMD1	9512	chr2:62363114:+	B3GNT2	17072	chr2:62449347:+	ONLY_REF_SPLICE	YES	0	6	1	0.33	0.0173	0.0087	NEIGHBORS[48866],COMMD1->chr2:62115859-62374382:+,copper_metabolism_domain_containing_1,B3GNT2->UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_2,chr2:62423248-62451866:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.026	FALSE	0	4	0	4	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDHX--CD44	2	1	PDHX	3068	chr11:34953031:+	CD44	20666	chr11:35198122:+	ONLY_REF_SPLICE	YES	71	1050	0.04	0	0.0173	0.0087	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.04	0.026	FALSE	0	0	0	5	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0087	0.0433	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.052	FALSE	275	511	55	178	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ALS2--SUCLG1	2	0	ALS2	8876	chr2:202625604:-	SUCLG1	58731	chr2:84650896:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	ALS2->ALS2,_alsin_Rho_guanine_nucleotide_exchange_factor,chr2:202565277-202645912:-,SUCLG1->chr2:84650647-84687169:-,succinate-CoA_ligase_alpha_subunit	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C17orf76-AS1--GABPB2	2	0	C17orf76-AS1	1593	chr17:16342728:+	GABPB2	15711	chr1:151060666:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	C17orf76-AS1->chr17:16342136-16381992:+,GABPB2->GA_binding_protein_transcription_factor_beta_subunit_2,chr1:151043054-151098018:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	347	1186	183	220	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CYTH4--TGFB1	2	0	CYTH4	1562	chr22:37678629:+	TGFB1	28986	chr19:41838186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	CYTH4->chr22:37678068-37711382:+,cytohesin_4,TGFB1->Oncogene{Bushman},chr19:41807492-41859816:-,transforming_growth_factor_beta_1	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HINT1--CTC-228N24.3	2	0	HINT1	2556	chr5:130500753:-	CTC-228N24.3	24348	chr5:127292613:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	HINT1->chr5:130494720-130507428:-,histidine_triad_nucleotide_binding_protein_1,CTC-228N24.3->chr5:127276118-127418864:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	4	IGH@	95370	chr14:106329408:-	WHSC1	145147	chr4:1932353:+	ONLY_REF_SPLICE	YES	1	444	0.83	0.01	0.0087	0.0346	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.83	0.0433	FALSE	0	0	0	3	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	4	IGH@	95370	chr14:106329408:-	WHSC1	146292	chr4:1936871:+	ONLY_REF_SPLICE	NO	1	393	0.83	0.01	0.0087	0.0346	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.83	0.0433	FALSE	0	0	0	1	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OSTF1--C9orf41	2	0	OSTF1	1184	chr9:77703642:+	C9orf41	16635	chr9:77632364:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	LOCAL_INVERSION:+:-:[60120],OSTF1->chr9:77703459-77762181:+,osteoclast_stimulating_factor_1,C9orf41->chr9:77595936-77643339:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PINX1--RP1L1	2	0	PINX1	6234	chr8:10683662:-	RP1L1	17312	chr8:10480730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	NEIGHBORS[52776],PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	FALSE	1	8	0	15	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-400D2.2--IVNS1ABP	2	0	RP11-400D2.2	1216	chr4:135248413:-	IVNS1ABP	15418	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	RP11-400D2.2->chr4:135176328-135248628:-,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.83	1	0.0087	0.0346	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.0433	FALSE	192	492	57	212	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPATS2--IGL@	2	0	SPATS2	2004	chr12:49761370:+	IGL@	90227	chr22:23237555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	SPATS2->chr12:49760367-49921205:+,spermatogenesis_associated_serine_rich_2,IGL@->Oncogene{Bushman}	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SUPT3H--CDC5L	2	0	SUPT3H	7183	chr6:45073659:-	CDC5L	37448	chr6:44413392:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},SUPT3H->SPT3_homolog,_SAGA_and_STAGA_complex_component,chr6:44777054-45345690:-,CDC5L->cell_division_cycle_5_like,chr6:44355262-44418163:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGH@--WHSC1	1	1	IGH@	95370	chr14:106329408:-	WHSC1	159815	chr4:1953835:+	ONLY_REF_SPLICE	NO	1	273	0.67	0.01	0.0087	0.0087	chimerdb_pubmed{human myeloma,multiple myeloma (MM),myeloma},IGH@->Oncogene{Bushman},WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.67	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PDHX--CD44	1	1	PDHX	1987	chr11:34938362:+	CD44	37425	chr11:35236399:+	ONLY_REF_SPLICE	NO	59	831	0.03	0	0.0087	0.0087	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0174	FALSE	0	1	0	9	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0087	0.0087	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0174	FALSE	93	270	15	244	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL31--AHCY	1	1	RPL31	5008	chr2:101622533:+	AHCY	17414	chr20:32883391:-	ONLY_REF_SPLICE	YES	131	418	0.02	0	0.0087	0.0087	RPL31->chr2:101618177-101640494:+,ribosomal_protein_L31,AHCY->adenosylhomocysteinase,chr20:32868074-32899608:-	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000050
NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XKR9--RP11-326E22.1	1	1	XKR9	8344	chr8:71619388:+	RP11-326E22.1	21087	chr8:72111375:+	ONLY_REF_SPLICE	NO	9	0	0.18	1	0.0087	0.0087	GTEx_FI:{Brain=[count:4=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Liver=[count:1=pct:0.8]},XKR9->XK_related_9,chr8:71581600-71702606:+,RP11-326E22.1->chr8:72067692-72116458:+	NCIH929_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.0174	TRUE	5	29	0	13	0	FALSE	ACH-000050
A253_SALIVARY_GLAND	CNOT7--VPS13B	83	46	CNOT7	1204	chr8:17104184:-	VPS13B	72194	chr8:100821603:+	ONLY_REF_SPLICE	YES	464	8	0.22	0.94	0.9986	0.5534	CNOT7->CCR4-NOT_transcription_complex_subunit_7,chr8:17086737-17104387:-,VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast)	A253_SALIVARY_GLAND	0.22	0.94	1.552	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	TIMM23B--LINC00843	48	17	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5775	0.2045	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	A253_SALIVARY_GLAND	1	1	0.782	TRUE	508	994	45	981	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	TIMM23--RP11-464F9.1	28	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3369	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	A253_SALIVARY_GLAND	1	1	0.3369	TRUE	519	3926	326	965	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	MT-TA--MT-TC	21	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2527	0.0481	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A253_SALIVARY_GLAND	1	1	0.3008	FALSE	462	80	0	856	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	MT-ND6--MT-TE	20	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2406	0.012	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A253_SALIVARY_GLAND	1	1	0.2526	FALSE	499	1288	110	792	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	CDK13--C7orf10	13	6	CDK13	10205	chr7:40087476:+	C7orf10	44873	chr7:40789033:+	ONLY_REF_SPLICE	YES	39	16	0.33	0.54	0.1564	0.0722	NEIGHBORS[37842],CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,C7orf10->chr7:40174575-40900362:+	A253_SALIVARY_GLAND	0.33	0.54	0.2286	FALSE	0	0	0	1	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	NIPA2--POLA1	12	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1444	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	A253_SALIVARY_GLAND	1	1	0.1444	TRUE	46	1352	75	139	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	PABPC1--KRT14	12	0	PABPC1	2002	chr8:101734036:-	KRT14	18384	chr17:39743147:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1444	0	GTEx&tcga_normals:1/3694=0.03%,PABPC1->chr8:101698044-101735037:-,poly(A)_binding_protein_cytoplasmic_1,KRT14->chr17:39738531-39743173:-,keratin_14	A253_SALIVARY_GLAND	1	1	0.1444	TRUE	0	0	0	4	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1323	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	A253_SALIVARY_GLAND	1	1	0.1323	TRUE	0	0	0	434	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	RP11-96H19.1--RP11-446N19.1	9	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.8	1	0.1083	0.0842	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A253_SALIVARY_GLAND	0.8	1	0.1925	FALSE	407	2205	196	549	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	PCM1--FGL1	9	6	PCM1	1349	chr8:17780697:+	FGL1	51451	chr8:17753925:-	ONLY_REF_SPLICE	YES	76	0	0.16	1	0.1083	0.0722	LOCAL_INVERSION:+:-:[12475],PCM1->Oncogene{Bushman},chr8:17780349-17885478:+,pericentriolar_material_1,FGL1->chr8:17721889-17767874:-,fibrinogen_like_1	A253_SALIVARY_GLAND	0.16	1	0.1805	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	MYO10--RICTOR	8	8	MYO10	1476	chr5:16935897:-	RICTOR	53813	chr5:39021238:-	ONLY_REF_SPLICE	YES	186	14	0.08	0.53	0.0963	0.0963	MYO10->chr5:16665395-16936372:-,myosin_X,RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-	A253_SALIVARY_GLAND	0.08	0.53	0.1926	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	MT-ND6--MT-TE	7	9	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0.1083	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A253_SALIVARY_GLAND	1	1	0.1925	FALSE	499	1288	110	792	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	MT-ND6--MT-TE	9	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1083	0.012	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A253_SALIVARY_GLAND	1	1	0.1203	FALSE	499	1288	110	792	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	NRIP1--AF127936.7	9	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1083	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A253_SALIVARY_GLAND	1	1	0.1083	FALSE	292	1546	117	613	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	CDH13--RP11-22H5.2	8	3	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	14	0	0.44	1	0.0963	0.0361	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	A253_SALIVARY_GLAND	0.44	1	0.1324	FALSE	14	31	0	36	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	RP11-123O10.4--GRIP1	7	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0842	0.0361	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	A253_SALIVARY_GLAND	1	1	0.1203	FALSE	416	2512	207	587	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	CDK13--C7orf10	6	6	CDK13	10205	chr7:40087476:+	C7orf10	43795	chr7:40723655:+	ONLY_REF_SPLICE	YES	39	17	0.24	0.41	0.0722	0.0722	NEIGHBORS[37842],CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,C7orf10->chr7:40174575-40900362:+	A253_SALIVARY_GLAND	0.24	0.41	0.1444	FALSE	0	0	0	1	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	MT-TA--MT-TC	7	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0842	0.0241	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A253_SALIVARY_GLAND	1	1	0.1083	FALSE	462	80	0	856	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	JUP--MT-CO3	7	1	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	756	12094	0.01	0	0.0842	0.012	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	A253_SALIVARY_GLAND	0	0.01	0.0962	FALSE	0	0	0	33	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	RP11-96H19.1--RP11-446N19.1	6	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	1	0.73	0.92	0.0722	0.0602	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A253_SALIVARY_GLAND	0.73	0.92	0.1324	FALSE	515	4851	409	746	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	NRIP1--AF127936.7	7	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0842	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A253_SALIVARY_GLAND	1	1	0.0842	FALSE	125	705	46	456	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	MT-ND6--MT-TE	5	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0602	0.0722	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A253_SALIVARY_GLAND	1	1	0.1324	FALSE	499	1288	110	792	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	12	1	0.37	0.0722	0.012	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A253_SALIVARY_GLAND	0.37	1	0.0842	TRUE	458	1351	185	561	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	MLX--ATP6V0A1	6	0	MLX	5277	chr17:40723725:+	ATP6V0A1	18329	chr17:40630481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0722	0	LOCAL_REARRANGEMENT:+:[44457],MLX->MLX,_MAX_dimerization_protein,chr17:40719086-40725257:+,ATP6V0A1->ATPase_H+_transporting_V0_subunit_a1,chr17:40610862-40674629:+	A253_SALIVARY_GLAND	1	1	0.0722	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	MT-ATP6--MT-CO1	5	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11050	13995	0	0	0.0602	0.0241	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A253_SALIVARY_GLAND	0	0	0.0843	FALSE	183	104	9	328	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	RP11-680G10.1--GSE1	5	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	31	1	0.16	0.0602	0.012	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	A253_SALIVARY_GLAND	0.16	1	0.0722	TRUE	465	1949	224	605	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	CNOT7--VPS13B	1	15	CNOT7	1204	chr8:17104184:-	VPS13B	73350	chr8:100829768:+	ONLY_REF_SPLICE	YES	464	22	0.03	0.42	0.012	0.1805	CNOT7->CCR4-NOT_transcription_complex_subunit_7,chr8:17086737-17104387:-,VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast)	A253_SALIVARY_GLAND	0.03	0.42	0.1925	TRUE	0	0	0	1	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	MT-ATP6--MT-CO1	4	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	9202	13732	0	0	0.0481	0.0241	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A253_SALIVARY_GLAND	0	0	0.0722	FALSE	183	104	9	328	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	MT-ATP6--MT-CO1	3	5	MT-ATP6	1555	chrM:9081:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	3110	12584	0	0	0.0361	0.0602	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A253_SALIVARY_GLAND	0	0	0.0963	FALSE	183	104	9	328	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	ENO3--RNF167	4	0	ENO3	6754	chr17:4857140:+	RNF167	13520	chr17:4843782:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0481	0	LOCAL_REARRANGEMENT:+:[2870],ENO3->chr17:4851387-4860426:+,enolase_3,RNF167->chr17:4843303-4848517:+,ring_finger_protein_167	A253_SALIVARY_GLAND	1	1	0.0481	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	A253_SALIVARY_GLAND	1	1	0.0481	FALSE	499	1288	110	792	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0481	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	A253_SALIVARY_GLAND	1	1	0.0481	FALSE	462	80	0	856	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	11050	0	0	1	0.0361	0.0241	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A253_SALIVARY_GLAND	0	1	0.0602	FALSE	182	97	9	327	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	MT-ATP6--MT-CO1	3	2	MT-ATP6	1157	chrM:8683:+	MT-CO1	5227	chrM:6449:+	INCL_NON_REF_SPLICE	YES	10952	12578	0	0	0.0361	0.0241	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A253_SALIVARY_GLAND	0	0	0.0602	FALSE	183	104	9	328	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	4739	chrM:5961:+	INCL_NON_REF_SPLICE	YES	11050	0	0	1	0.0361	0.0241	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A253_SALIVARY_GLAND	0	1	0.0602	FALSE	182	97	9	327	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	MT-ATP6--MT-CO1	3	2	MT-ATP6	1139	chrM:8665:+	MT-CO1	5217	chrM:6439:+	INCL_NON_REF_SPLICE	YES	10074	12539	0	0	0.0361	0.0241	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	A253_SALIVARY_GLAND	0	0	0.0602	FALSE	183	104	9	328	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	JUP--MT-CO3	3	1	JUP	8242	chr17:39923795:-	MT-CO3	24128	chrM:9574:+	INCL_NON_REF_SPLICE	YES	705	11810	0.01	0	0.0361	0.012	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	A253_SALIVARY_GLAND	0	0.01	0.0481	FALSE	0	0	0	33	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	RB1--ITM2B	3	1	RB1	2426	chr13:48881542:+	ITM2B	35499	chr13:48827944:+	ONLY_REF_SPLICE	YES	73	1048	0.05	0	0.0361	0.012	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood=[count:34=pct:19.5],Whole_Blood=[count:23=pct:17.4],Brain=[count:4=pct:0.6],Esophagus=[count:3=pct:0.7],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:2=pct:0.7],Spleen=[count:2=pct:1.8],Salivary_Gland=[count:2=pct:5.1],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Vagina=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},GTEx_v2:{count=34;pct=0.39%;dist=Whole_Blood=17,Brain_-_Spinal_cord_(cervical_c-1)=2,Lung=2,Esophagus_-_Mucosa=2,Small_Intestine_-_Terminal_Ileum=1,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Minor_Salivary_Gland=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:+:[40824],RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1,ITM2B->chr13:48807294-48837063:+,integral_membrane_protein_2B	A253_SALIVARY_GLAND	0	0.05	0.0481	FALSE	53	73	8	19	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	CD44--PDHX	3	0	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0361	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	A253_SALIVARY_GLAND	1	1	0.0361	TRUE	0	20	0	35	2	FALSE	ACH-000740
A253_SALIVARY_GLAND	CD44--PDHX	3	0	CD44	1501	chr11:35160917:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0361	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	A253_SALIVARY_GLAND	1	1	0.0361	TRUE	0	7	0	19	1	TRUE	ACH-000740
A253_SALIVARY_GLAND	CDH13--RP11-22H5.2	2	4	CDH13	7013	chr16:82753080:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	28	0	0.18	1	0.0241	0.0481	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	A253_SALIVARY_GLAND	0.18	1	0.0722	FALSE	1	1	0	8	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	CHSY3--HSPA8P4	3	0	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	A253_SALIVARY_GLAND	1	1	0.0361	FALSE	89	26	1	44	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0361	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	A253_SALIVARY_GLAND	1	1	0.0361	TRUE	0	0	0	434	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	RP11-96H19.1--RP11-446N19.1	1	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	4	0	0.67	1	0.012	0.0842	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	A253_SALIVARY_GLAND	0.67	1	0.0962	FALSE	275	511	55	178	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	AC002066.1--CAV1	2	1	AC002066.1	1112	chr7:116139408:-	CAV1	14768	chr7:116199000:+	ONLY_REF_SPLICE	YES	2	4080	0.6	0	0.0241	0.012	LOCAL_INVERSION:-:+:[25320],AC002066.1->chr7:115878314-116139519:-,CAV1->Oncogene{Bushman},caveolin_1,chr7:116164839-116201233:+	A253_SALIVARY_GLAND	0	0.6	0.0361	FALSE	0	0	1	6	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	NRIP1--AF127936.7	2	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.14	1	0.0241	0.012	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	A253_SALIVARY_GLAND	0.14	1	0.0361	FALSE	164	806	69	479	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	POLE4--RP11-355F16.1	2	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	155	0	0.02	1	0.0241	0.012	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	A253_SALIVARY_GLAND	0.02	1	0.0361	TRUE	5	7	0	37	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	AC092573.2--CDCA7	2	0	AC092573.2	1042	chr2:174220895:-	CDCA7	6828	chr2:174223440:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	NEIGHBORS_OVERLAP:-:+:[1388],AC092573.2->chr2:174202947-174220936:-,CDCA7->cell_division_cycle_associated_7,chr2:174219548-174233725:+	A253_SALIVARY_GLAND	1	1	0.0241	FALSE	0	11	0	2	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	DNAJC24--ARL14EP	2	0	DNAJC24	2020	chr11:31392406:+	ARL14EP	25368	chr11:30352433:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},DNAJC24->DnaJ_heat_shock_protein_family_(Hsp40)_member_C24,Oncogene{Bushman},chr11:31391387-31453396:+,ARL14EP->ADP_ribosylation_factor_like_GTPase_14_effector_protein,chr11:30344598-30359774:+	A253_SALIVARY_GLAND	1	1	0.0241	TRUE	0	1	0	2	1	TRUE	ACH-000740
A253_SALIVARY_GLAND	FBRSL1--RP11-503G7.1	2	0	FBRSL1	2311	chr12:133067447:+	RP11-503G7.1	28918	chr12:133035820:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	LOCAL_REARRANGEMENT:+:[29527],FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,RP11-503G7.1->chr12:133033746-133036610:+	A253_SALIVARY_GLAND	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	KDM5B--ZNF718	2	0	KDM5B	8265	chr1:202742246:-	ZNF718	41237	chr4:154702:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	KDM5B->chr1:202696526-202778598:-,lysine_demethylase_5B,ZNF718->chr4:124386-157779:+,zinc_finger_protein_718	A253_SALIVARY_GLAND	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	KIAA0753--SPIN1	2	0	KIAA0753	20990	chr17:6493099:-	SPIN1	32034	chr9:91041297:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	KIAA0753->KIAA0753,chr17:6481468-6544247:-,SPIN1->chr9:91003334-91093609:+,spindlin_1	A253_SALIVARY_GLAND	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	MRPS21--SETDB1	2	0	MRPS21	1581	chr1:150266869:+	SETDB1	22522	chr1:150933039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	MRPS21->chr1:150266289-150281414:+,mitochondrial_ribosomal_protein_S21,SETDB1->SET_domain_bifurcated_1,chr1:150898739-150937213:+	A253_SALIVARY_GLAND	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	SIRT2--KIF15	2	0	SIRT2	11167	chr19:39371325:-	KIF15	44876	chr3:44882566:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0241	0	SIRT2->chr19:39369197-39390502:-,sirtuin_2,KIF15->chr3:44803209-44914868:+,kinesin_family_member_15	A253_SALIVARY_GLAND	1	1	0.0241	TRUE	0	0	0	1	0	TRUE	ACH-000740
A253_SALIVARY_GLAND	RP11-120D5.1--MID1	1	2	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	2	80	0.6	0.04	0.012	0.0241	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	A253_SALIVARY_GLAND	0.04	0.6	0.0361	FALSE	2	31	0	60	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	80	0.43	0.04	0.012	0.0241	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	A253_SALIVARY_GLAND	0.04	0.43	0.0361	FALSE	16	356	14	466	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	ZDHHC2--VPS13B	1	2	ZDHHC2	1825	chr8:17014362:+	VPS13B	78893	chr8:100821603:+	ONLY_REF_SPLICE	YES	95	8	0.03	0.27	0.012	0.0241	ZDHHC2->chr8:17013538-17082308:+,zinc_finger_DHHC-type_containing_2,VPS13B->chr8:100025494-100889808:+,vacuolar_protein_sorting_13_homolog_B_(yeast)	A253_SALIVARY_GLAND	0.03	0.27	0.0361	TRUE	0	0	0	1	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	CTNNB1--ULK4	1	1	CTNNB1	3896	chr3:41241161:+	ULK4	57611	chr3:41705190:-	ONLY_REF_SPLICE	YES	460	0	0	1	0.012	0.012	GTEx_v2:{count=8;pct=0.09%;dist=Heart_-_Atrial_Appendage=2,Lung=1,Prostate=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Colon_-_Transverse=1},NEIGHBORS_OVERLAP:+:-:[13497],CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	A253_SALIVARY_GLAND	0	1	0.024	FALSE	0	1	0	2	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	CTNNB1--ULK4	1	1	CTNNB1	3896	chr3:41241161:+	ULK4	46934	chr3:41877463:-	ONLY_REF_SPLICE	YES	460	2	0	0.5	0.012	0.012	GTEx_v2:{count=8;pct=0.09%;dist=Heart_-_Atrial_Appendage=2,Lung=1,Prostate=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Muscularis=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Colon_-_Transverse=1},NEIGHBORS_OVERLAP:+:-:[13497],CTNNB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,catenin_beta_1,chr3:41236328-41301587:+,ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4	A253_SALIVARY_GLAND	0	0.5	0.024	FALSE	0	1	0	3	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	GPR126--VTA1	1	1	GPR126	2987	chr6:142630781:+	VTA1	37567	chr6:142487365:+	ONLY_REF_SPLICE	NO	56	138	0.03	0.01	0.012	0.012	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:+:[77165],GPR126->chr6:142622991-142767403:+,VTA1->chr6:142468367-142545826:+,vesicle_trafficking_1	A253_SALIVARY_GLAND	0.01	0.03	0.024	FALSE	0	2	0	15	1	FALSE	ACH-000740
A253_SALIVARY_GLAND	MIR205HG--C9orf3	1	1	MIR205HG	2657	chr1:209603821:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	175	238	0.01	0.01	0.012	0.012	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	A253_SALIVARY_GLAND	0.01	0.01	0.024	FALSE	7	55	2	6	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	MIR205HG--C9orf3	1	1	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	142	238	0.01	0.01	0.012	0.012	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	A253_SALIVARY_GLAND	0.01	0.01	0.024	FALSE	86	303	14	25	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	NAT10--CAPRIN1	1	1	NAT10	6527	chr11:34135385:+	CAPRIN1	50367	chr11:34120850:+	ONLY_REF_SPLICE	NO	309	1232	0.01	0	0.012	0.012	LOCAL_REARRANGEMENT:+:[4446],NAT10->N-acetyltransferase_10,chr11:34127149-34169217:+,CAPRIN1->cell_cycle_associated_protein_1,chr11:34073230-34122703:+	A253_SALIVARY_GLAND	0	0.01	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.012	0.012	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	A253_SALIVARY_GLAND	1	1	0.024	TRUE	477	1352	189	275	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	TBCA--AP3B1	1	1	TBCA	2304	chr5:77072029:-	AP3B1	28487	chr5:77425131:-	ONLY_REF_SPLICE	NO	219	75	0.01	0.03	0.012	0.012	TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	A253_SALIVARY_GLAND	0.01	0.03	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	TBCA--AP3B1	1	1	TBCA	2304	chr5:77072029:-	AP3B1	20537	chr5:77477486:-	ONLY_REF_SPLICE	YES	219	111	0.01	0.02	0.012	0.012	TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	A253_SALIVARY_GLAND	0.01	0.02	0.024	FALSE	0	1	0	2	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	TMEM181--DYNLT1	1	1	TMEM181	6914	chr6:159010814:+	DYNLT1	27019	chr6:159058926:-	ONLY_REF_SPLICE	YES	61	40	0.03	0.05	0.012	0.012	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Testis=1},LOCAL_INVERSION:+:-:[1046],TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181,DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1	A253_SALIVARY_GLAND	0.03	0.05	0.024	TRUE	0	5	0	4	0	FALSE	ACH-000740
A253_SALIVARY_GLAND	VAPA--USP14	1	1	VAPA	1334	chr18:9914332:+	USP14	30541	chr18:196637:+	ONLY_REF_SPLICE	YES	485	172	0	0.01	0.012	0.012	VAPA->VAMP_associated_protein_A,chr18:9913999-9960018:+,USP14->chr18:158383-214629:+,ubiquitin_specific_peptidase_14	A253_SALIVARY_GLAND	0	0.01	0.024	FALSE	0	0	0	2	0	FALSE	ACH-000740
ISTMES2_PLEURA	TIMM23B--LINC00843	98	39	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.4569	0.5798	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ISTMES2_PLEURA	0.99	1	2.0367	TRUE	508	994	45	981	0	FALSE	ACH-000331
ISTMES2_PLEURA	TIMM23--RP11-464F9.1	54	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	310	3	0.15	0.95	0.8028	0.0149	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	ISTMES2_PLEURA	0.15	0.95	0.8177	TRUE	519	3926	326	965	0	FALSE	ACH-000331
ISTMES2_PLEURA	RP11-123O10.4--GRIP1	25	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3717	0.1041	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ISTMES2_PLEURA	1	1	0.4758	FALSE	416	2512	207	587	0	FALSE	ACH-000331
ISTMES2_PLEURA	ZNF654--HMGB2	20	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2973	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	ISTMES2_PLEURA	1	1	0.2973	TRUE	0	0	0	518	0	FALSE	ACH-000331
ISTMES2_PLEURA	PKM--PPIA	7	0	PKM	16758	chr15:72494872:-	PPIA	23273	chr7:44836291:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1041	0	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	ISTMES2_PLEURA	1	1	0.1041	TRUE	0	0	0	18	0	TRUE	ACH-000331
ISTMES2_PLEURA	NRIP1--AF127936.7	5	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	47	0	0.18	1	0.0743	0.0743	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ISTMES2_PLEURA	0.18	1	0.1486	FALSE	164	806	69	479	0	FALSE	ACH-000331
ISTMES2_PLEURA	RP4-565E6.1--HYDIN	6	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0892	0.0149	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	ISTMES2_PLEURA	1	1	0.1041	TRUE	456	1387	91	133	0	FALSE	ACH-000331
ISTMES2_PLEURA	RP11-123O10.4--GRIP1	5	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.9	0.0743	0.0595	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ISTMES2_PLEURA	0.9	1	0.1338	FALSE	93	270	15	244	0	FALSE	ACH-000331
ISTMES2_PLEURA	RP11-123O10.4--GRIP1	3	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	8775	chr12:67024116:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0.1041	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	ISTMES2_PLEURA	1	1	0.1487	FALSE	9	21	5	22	0	FALSE	ACH-000331
ISTMES2_PLEURA	NRIP1--AF127936.7	3	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	25	0	0.22	1	0.0446	0.0595	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ISTMES2_PLEURA	0.22	1	0.1041	FALSE	125	705	46	456	0	FALSE	ACH-000331
ISTMES2_PLEURA	NRIP1--AF127936.7	3	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.33	1	0.0446	0.0297	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ISTMES2_PLEURA	0.33	1	0.0743	FALSE	292	1546	117	613	0	FALSE	ACH-000331
ISTMES2_PLEURA	MT-CO1--MT-ND2	3	0	MT-CO1	1600	chrM:6503:+	MT-ND2	5589	chrM:4516:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	ISTMES2_PLEURA	1	1	0.0446	FALSE	55	19	1	13	0	FALSE	ACH-000331
ISTMES2_PLEURA	PBX3--MAPKAP1	3	0	PBX3	2279	chr9:128510902:+	MAPKAP1	46938	chr9:128206877:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=14;pct=0.16%;dist=Artery_-_Tibial=2,Adrenal_Gland=2,Cells_-_Transformed_fibroblasts=2,Stomach=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Spleen=1},LOCAL_INVERSION:+:-:[40111],PBX3->chr9:128509624-128729656:+,pre-B-cell_leukemia_homeobox_3,MAPKAP1->chr9:128199672-128469513:-,mitogen-activated_protein_kinase_associated_protein_1	ISTMES2_PLEURA	1	1	0.0446	TRUE	0	0	0	2	0	TRUE	ACH-000331
ISTMES2_PLEURA	WTAPP1--RUVBL1	3	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	ISTMES2_PLEURA	1	1	0.0446	TRUE	9	252	6	66	0	FALSE	ACH-000331
ISTMES2_PLEURA	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0.0446	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ISTMES2_PLEURA	1	1	0.0743	FALSE	467	2173	244	435	0	FALSE	ACH-000331
ISTMES2_PLEURA	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0.0446	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ISTMES2_PLEURA	1	1	0.0743	FALSE	515	4851	409	746	0	FALSE	ACH-000331
ISTMES2_PLEURA	RP11-680G10.1--GSE1	2	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	24	1	0.14	0.0297	0.0297	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ISTMES2_PLEURA	0.14	1	0.0594	TRUE	458	1351	185	561	0	FALSE	ACH-000331
ISTMES2_PLEURA	RP11-680G10.1--GSE1	2	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	118	1	0.02	0.0297	0.0149	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	ISTMES2_PLEURA	0.02	1	0.0446	TRUE	465	1949	224	605	0	FALSE	ACH-000331
ISTMES2_PLEURA	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0149	0.0743	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ISTMES2_PLEURA	1	1	0.0892	FALSE	407	2205	196	549	0	FALSE	ACH-000331
ISTMES2_PLEURA	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0149	0.0743	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	ISTMES2_PLEURA	1	1	0.0892	FALSE	192	492	57	212	0	FALSE	ACH-000331
ISTMES2_PLEURA	RPLP1--KIF23	2	1	RPLP1	1938	chr15:69746060:+	KIF23	16465	chr15:69721450:+	ONLY_REF_SPLICE	YES	4310	131	0	0.02	0.0297	0.0149	{Klijn_CCL:Urinary_Bladder=1},LOCAL_REARRANGEMENT:+:[4359],RPLP1->chr15:69745123-69748255:+,ribosomal_protein_lateral_stalk_subunit_P1,KIF23->chr15:69706585-69740764:+,kinesin_family_member_23	ISTMES2_PLEURA	0	0.02	0.0446	FALSE	0	0	0	5	0	FALSE	ACH-000331
ISTMES2_PLEURA	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	ISTMES2_PLEURA	1	1	0.0297	TRUE	0	9	0	44	1	FALSE	ACH-000331
ISTMES2_PLEURA	SFPQ--EPS15L1	2	0	SFPQ	7033	chr1:35652602:-	EPS15L1	46618	chr19:16472795:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich,EPS15L1->Oncogene{Bushman},chr19:16466050-16582896:-,epidermal_growth_factor_receptor_pathway_substrate_15-like_1	ISTMES2_PLEURA	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000331
ISTMES2_PLEURA	SPPL2A--AP4E1	2	0	SPPL2A	8343	chr15:51028298:-	AP4E1	41478	chr15:51293223:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	SPPL2A->chr15:50999506-51058005:-,signal_peptide_peptidase_like_2A,AP4E1->adaptor_related_protein_complex_4_epsilon_1_subunit,chr15:51200869-51298097:+	ISTMES2_PLEURA	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000331
ISTMES2_PLEURA	ZNF519--RPLP0	2	0	ZNF519	2343	chr18:14124349:-	RPLP0	26269	chr12:120635265:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,RPLP0->chr12:120634489-120639038:-,ribosomal_protein_lateral_stalk_subunit_P0	ISTMES2_PLEURA	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000331
ISTMES2_PLEURA	GSTCD--PAPSS1	1	1	GSTCD	7953	chr4:106650656:+	PAPSS1	26276	chr4:108615162:-	ONLY_REF_SPLICE	NO	56	113	0.03	0.02	0.0149	0.0149	GSTCD->chr4:106629935-106768885:+,glutathione_S-transferase_C-terminal_domain_containing,PAPSS1->3'-phosphoadenosine_5'-phosphosulfate_synthase_1,chr4:108511433-108641608:-	ISTMES2_PLEURA	0.02	0.03	0.0298	TRUE	0	0	0	1	0	FALSE	ACH-000331
ISTMES2_PLEURA	HNRNPA2B1--CANX	1	1	HNRNPA2B1	7938	chr7:26233195:-	CANX	23125	chr5:179135240:+	ONLY_REF_SPLICE	YES	1387	1195	0	0	0.0149	0.0149	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,CANX->calnexin,chr5:179105629-179157926:+	ISTMES2_PLEURA	0	0	0.0298	FALSE	0	0	0	1	0	FALSE	ACH-000331
ISTMES2_PLEURA	MRPS17--MLLT4	1	1	MRPS17	6177	chr7:55991392:+	MLLT4	44052	chr6:168348973:+	ONLY_REF_SPLICE	NO	0	121	1	0.02	0.0149	0.0149	MRPS17->chr7:55954970-56022932:+,chr7:56019512-56024192:+,mitochondrial_ribosomal_protein_S17,MLLT4->Oncogene{Bushman},chr6:168227602-168372703:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_4	ISTMES2_PLEURA	0.02	1	0.0298	TRUE	0	0	0	1	0	FALSE	ACH-000331
ISTMES2_PLEURA	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	25	2	0.07	0.5	0.0149	0.0149	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	ISTMES2_PLEURA	0.07	0.5	0.0298	FALSE	7	44	2	41	0	FALSE	ACH-000331
ISTMES2_PLEURA	RAI14--NADK2	1	1	RAI14	7366	chr5:34687060:+	NADK2	37670	chr5:36227667:-	ONLY_REF_SPLICE	YES	80	12	0.02	0.14	0.0149	0.0149	RAI14->chr5:34656342-34832732:+,retinoic_acid_induced_14,NADK2->NAD_kinase_2,_mitochondrial,chr5:36192694-36242381:-	ISTMES2_PLEURA	0.02	0.14	0.0298	TRUE	0	0	0	1	0	FALSE	ACH-000331
ISTMES2_PLEURA	RP4-565E6.1--HYDIN	1	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0149	0.0149	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	ISTMES2_PLEURA	0.67	1	0.0298	TRUE	84	87	4	41	0	FALSE	ACH-000331
ISTMES2_PLEURA	YWHAE--CRK	1	1	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	903	73	0	0.03	0.0149	0.0149	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	ISTMES2_PLEURA	0	0.03	0.0298	FALSE	6	50	7	115	0	FALSE	ACH-000331
NCIH2030_LUNG	MT-TA--MT-TN	174	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6452	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2030_LUNG	1	1	1.6452	FALSE	369	2501	205	193	0	FALSE	ACH-000521
NCIH2030_LUNG	TIMM23B--LINC00843	142	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3426	0.2269	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2030_LUNG	1	1	1.5695	TRUE	508	994	45	981	0	FALSE	ACH-000521
NCIH2030_LUNG	CCDC57--RP11-332O19.5	123	10	CCDC57	1044	chr17:80170663:-	RP11-332O19.5	41999	chr10:105005874:+	INCL_NON_REF_SPLICE	YES	0	9	1	0.94	1.163	0.0946	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,RP11-332O19.5->chr10:105005644-105007773:+	NCIH2030_LUNG	0.94	1	1.2576	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	CARS--DCHS1	93	9	CARS	8831	chr11:3059280:-	DCHS1	33589	chr11:6655537:-	ONLY_REF_SPLICE	YES	43	0	0.7	1	0.8793	0.0851	CARS->Oncogene{Bushman},chr11:3022152-3078843:-,cysteinyl-tRNA_synthetase,DCHS1->chr11:6642556-6677085:-,dachsous_cadherin-related_1	NCIH2030_LUNG	0.7	1	0.9644	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	TIMM23--RP11-464F9.1	95	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.8982	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2030_LUNG	1	1	0.8982	TRUE	519	3926	326	965	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TA--MT-TC	77	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.728	0.0756	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2030_LUNG	1	1	0.8036	FALSE	462	80	0	856	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND6--MT-TE	73	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.6902	0.0284	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2030_LUNG	0.99	1	0.7186	FALSE	499	1288	110	792	0	FALSE	ACH-000521
NCIH2030_LUNG	RP11-123O10.4--GRIP1	52	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4917	0.0662	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2030_LUNG	1	1	0.5579	FALSE	416	2512	207	587	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TA--MT-TN	18	105	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1702	0.9928	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2030_LUNG	1	1	1.163	FALSE	369	2501	205	193	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TA--MT-TN	29	50	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2742	0.4728	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2030_LUNG	1	1	0.747	FALSE	369	2501	205	193	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	13	106	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	3	0.97	0.98	0.1229	1.0022	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.97	0.98	1.1251	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND6--MT-TE	38	6	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.3593	0.0567	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2030_LUNG	0.98	1	0.416	FALSE	499	1288	110	792	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND6--MT-TE	33	22	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.312	0.208	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2030_LUNG	0.96	1	0.52	FALSE	499	1288	110	792	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TA--MT-TN	31	29	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2931	0.2742	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2030_LUNG	1	1	0.5673	FALSE	369	2501	205	193	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	10	106	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	3	0.97	0.97	0.0946	1.0022	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.97	0.97	1.0968	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	3	133	MT-CO3	1550	chrM:9756:+	MT-ATP6	4730	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4	0	0.97	1	0.0284	1.2575	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.97	1	1.2859	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	7	113	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	YES	6	0	0.95	1	0.0662	1.0684	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.95	1	1.1346	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	7	110	MT-CO3	1220	chrM:9426:+	MT-ATP6	5072	chrM:8814:+	INCL_NON_REF_SPLICE	YES	6	13	0.95	0.9	0.0662	1.0401	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.9	0.95	1.1063	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	PRR16--CTD-2334D19.1	33	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	32	0	0.54	1	0.312	0.0473	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH2030_LUNG	0.54	1	0.3593	FALSE	56	216	12	147	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	3	121	MT-CO3	1542	chrM:9748:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	4	0	0.97	1	0.0284	1.1441	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.97	1	1.1725	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	5	106	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	2	22	0.98	0.83	0.0473	1.0022	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.83	0.98	1.0495	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	3	109	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	9	47	0.93	0.7	0.0284	1.0306	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.7	0.93	1.059	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	3	107	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	7	3	0.94	0.97	0.0284	1.0117	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.94	0.97	1.0401	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	4	103	MT-CO3	1089	chrM:9295:+	MT-ATP6	5318	chrM:9060:+	INCL_NON_REF_SPLICE	YES	2	2	0.98	0.98	0.0378	0.9739	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.98	0.98	1.0117	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	3	106	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	4	53	0.96	0.67	0.0284	1.0022	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.67	0.96	1.0306	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	3	104	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	2	1	0.98	0.99	0.0284	0.9833	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.98	0.99	1.0117	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TA--MT-TN	28	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2647	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2030_LUNG	1	1	0.2647	FALSE	369	2501	205	193	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TA--MT-TN	19	35	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1796	0.3309	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2030_LUNG	1	1	0.5105	FALSE	369	2501	205	193	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TA--MT-TN	8	75	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0756	0.7091	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2030_LUNG	1	1	0.7847	FALSE	369	2501	205	193	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TC--MT-TY	26	2	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2458	0.0189	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH2030_LUNG	1	1	0.2647	FALSE	51	280	19	36	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	3	82	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	2	1	0.98	0.99	0.0284	0.7753	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.98	0.99	0.8037	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TA--MT-TN	23	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2175	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2030_LUNG	1	1	0.2175	FALSE	369	2501	205	193	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TA--MT-TC	20	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1891	0.0567	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2030_LUNG	1	1	0.2458	FALSE	462	80	0	856	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	11	35	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	1	0.96	0.98	0.104	0.3309	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.96	0.98	0.4349	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TA--MT-TN	6	54	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0.5106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2030_LUNG	1	1	0.5673	FALSE	369	2501	205	193	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TC--MT-TY	3	65	MT-TC	1059	chrM:5768:-	MT-TY	4060	chrM:5898:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0284	0.6146	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH2030_LUNG	1	1	0.643	FALSE	51	280	19	36	0	FALSE	ACH-000521
NCIH2030_LUNG	NRIP1--AF127936.7	19	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.1796	0.0095	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2030_LUNG	0.91	1	0.1891	FALSE	292	1546	117	613	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	19	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1796	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	1	1	0.1796	FALSE	231	205	14	283	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TA--MT-TC	18	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1702	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2030_LUNG	1	1	0.1702	FALSE	462	80	0	856	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TC--MT-TY	3	60	MT-TC	1061	chrM:5766:-	MT-TY	4075	chrM:5883:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0.5673	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH2030_LUNG	1	1	0.5957	FALSE	51	280	19	36	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	17	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	4	0	0.82	1	0.1607	0.0095	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.82	1	0.1702	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	6	42	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	2	1	0.96	0.98	0.0567	0.3971	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.96	0.98	0.4538	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	13	8	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	4	0	0.84	1	0.1229	0.0756	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.84	1	0.1985	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	15	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1418	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	1	1	0.1418	FALSE	230	193	14	283	0	FALSE	ACH-000521
NCIH2030_LUNG	RP11-59N23.1--CMAS	14	1	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	5	100	0.75	0.13	0.1324	0.0095	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH2030_LUNG	0.13	0.75	0.1419	TRUE	21	102	17	28	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND6--MT-TE	5	33	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0473	0.312	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2030_LUNG	0.97	1	0.3593	FALSE	499	1288	110	792	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND6--MT-TE	5	33	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0473	0.312	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2030_LUNG	0.95	1	0.3593	FALSE	499	1288	110	792	0	FALSE	ACH-000521
NCIH2030_LUNG	TAGLN2--MT-ND4	13	0	TAGLN2	6224	chr1:159888401:-	MT-ND4	10197	chrM:11228:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1229	0	TAGLN2->chr1:159887897-159895522:-,transgelin_2,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH2030_LUNG	1	1	0.1229	FALSE	0	0	0	2	0	FALSE	ACH-000521
NCIH2030_LUNG	NRIP1--AF127936.7	10	9	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.66	1	0.0946	0.0851	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2030_LUNG	0.66	1	0.1797	FALSE	164	806	69	479	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TA--MT-TN	12	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1135	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2030_LUNG	1	1	0.1135	FALSE	369	2501	205	193	0	FALSE	ACH-000521
NCIH2030_LUNG	RP11-96H19.1--RP11-446N19.1	11	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.104	0.0378	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2030_LUNG	0.88	1	0.1418	FALSE	407	2205	196	549	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	3	35	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	4	1	0.9	0.97	0.0284	0.3309	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.9	0.97	0.3593	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	5	25	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	2	1	0.94	0.97	0.0473	0.2364	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.94	0.97	0.2837	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	CCDC57--RP11-332O19.5	9	7	CCDC57	1045	chr17:80170662:-	RP11-332O19.5	42080	chr10:105005955:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.89	0.0851	0.0662	CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,RP11-332O19.5->chr10:105005644-105007773:+	NCIH2030_LUNG	0.89	1	0.1513	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	IGFBP4--NPM1	10	1	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	1684	1	0.01	0.92	0.0946	0.0095	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	NCIH2030_LUNG	0.01	0.92	0.1041	TRUE	0	0	0	38	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	10	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0946	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	1	1	0.0946	FALSE	230	198	14	283	0	FALSE	ACH-000521
NCIH2030_LUNG	PSKH1--ZC3H14	9	3	PSKH1	4241	chr16:67943609:+	ZC3H14	11720	chr14:89029995:+	ONLY_REF_SPLICE	YES	49	147	0.2	0.08	0.0851	0.0284	PSKH1->chr16:67927175-67963581:+,protein_serine_kinase_H1,ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14	NCIH2030_LUNG	0.08	0.2	0.1135	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	RP11-96H19.1--RP11-446N19.1	9	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.0851	0.0284	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2030_LUNG	0.86	1	0.1135	FALSE	515	4851	409	746	0	FALSE	ACH-000521
NCIH2030_LUNG	DNM2--ILF3	9	1	DNM2	23425	chr19:10916643:+	ILF3	51425	chr19:10793213:+	ONLY_REF_SPLICE	YES	115	301	0.08	0.03	0.0851	0.0095	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:+:[25662],DNM2->chr19:10828755-10944164:+,dynamin_2,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	NCIH2030_LUNG	0.03	0.08	0.0946	TRUE	0	0	0	1	0	FALSE	ACH-000521
NCIH2030_LUNG	CALM3--MT-ATP8	9	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0851	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	1	1	0.0851	FALSE	12	0	0	26	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TA--MT-TN	9	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0851	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2030_LUNG	1	1	0.0851	FALSE	369	2501	205	193	0	FALSE	ACH-000521
NCIH2030_LUNG	USP10--COTL1	9	0	USP10	1134	chr16:84733717:+	COTL1	32789	chr16:84600561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0851	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Cervix=1,Lung=1,Breast=1},LOCAL_INVERSION:+:-:[81901],USP10->chr16:84733584-84813528:+,ubiquitin_specific_peptidase_10,COTL1->Oncogene{Bushman},chr16:84599200-84651683:-,coactosin_like_F-actin_binding_protein_1	NCIH2030_LUNG	1	1	0.0851	TRUE	0	0	0	7	0	TRUE	ACH-000521
NCIH2030_LUNG	MT-ND6--MT-TE	3	23	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0284	0.2175	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2030_LUNG	0.96	1	0.2459	FALSE	499	1288	110	792	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND6--MT-TE	3	23	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	4	0	0.87	1	0.0284	0.2175	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2030_LUNG	0.87	1	0.2459	FALSE	499	1288	110	792	0	FALSE	ACH-000521
NCIH2030_LUNG	NRIP1--AF127936.7	8	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.58	1	0.0756	0.0284	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH2030_LUNG	0.58	1	0.104	FALSE	125	705	46	456	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND6--MT-TE	3	22	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0284	0.208	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2030_LUNG	0.93	1	0.2364	FALSE	499	1288	110	792	0	FALSE	ACH-000521
NCIH2030_LUNG	CPS1--CFLAR-AS1	8	1	CPS1	26121	chr2:211481265:+	CFLAR-AS1	55254	chr2:202015982:-	ONLY_REF_SPLICE	YES	430	0	0.02	1	0.0756	0.0095	CPS1->carbamoyl-phosphate_synthase_1,chr2:211342406-211543831:+,CFLAR-AS1->CFLAR_antisense_RNA_1,chr2:202005007-202022546:-	NCIH2030_LUNG	0.02	1	0.0851	TRUE	0	0	0	1	0	FALSE	ACH-000521
NCIH2030_LUNG	GOLGA5--CYP46A1	8	1	GOLGA5	6106	chr14:93276722:+	CYP46A1	23179	chr14:100165803:+	ONLY_REF_SPLICE	YES	65	0	0.12	1	0.0756	0.0095	GOLGA5->Oncogene{Bushman},chr14:93260576-93306308:+,golgin_A5,CYP46A1->chr14:100150641-100193638:+,cytochrome_P450_family_46_subfamily_A_member_1	NCIH2030_LUNG	0.12	1	0.0851	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	MT-ND6--COX7C	8	1	MT-ND6	1261	chrM:14413:-	COX7C	4608	chr5:85913803:+	INCL_NON_REF_SPLICE	YES	3251	0	0	1	0.0756	0.0095	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COX7C->chr5:85913721-85916779:+,cytochrome_c_oxidase_subunit_7C	NCIH2030_LUNG	0	1	0.0851	FALSE	0	0	0	7	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	6	8	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	4	0	0.78	1	0.0567	0.0756	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.78	1	0.1323	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	7	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	1	1	0.0662	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TA--MT-TN	7	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2030_LUNG	1	1	0.0662	FALSE	369	2501	205	193	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	3	15	MT-CO3	1005	chrM:9211:+	MT-ATP6	5314	chrM:9056:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.86	0.0284	0.1418	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.86	1	0.1702	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	RP11-353N4.6--SEC22B	6	2	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	106	173	0.07	0.04	0.0567	0.0189	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	NCIH2030_LUNG	0.04	0.07	0.0756	TRUE	49	42	7	43	0	FALSE	ACH-000521
NCIH2030_LUNG	JUP--MT-CO3	6	1	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	563	10099	0.01	0	0.0567	0.0095	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH2030_LUNG	0	0.01	0.0662	FALSE	0	0	0	33	0	FALSE	ACH-000521
NCIH2030_LUNG	LASP1--MT-ND4L	6	1	LASP1	12948	chr17:37075343:+	MT-ND4L	18644	chrM:10485:+	INCL_NON_REF_SPLICE	YES	309	0	0.02	1	0.0567	0.0095	LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2030_LUNG	0.02	1	0.0662	FALSE	0	0	0	7	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	6	1	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	11823	0	0	1	0.0567	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	0	1	0.0662	FALSE	231	217	16	283	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	6	1	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	11830	0	0	1	0.0567	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	0	1	0.0662	FALSE	231	217	16	283	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TA--MT-TC	4	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0.0851	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2030_LUNG	1	1	0.1229	FALSE	462	80	0	856	0	FALSE	ACH-000521
NCIH2030_LUNG	PTPRG--FLNB	6	1	PTPRG	4217	chr3:61735964:+	FLNB	53983	chr3:58081875:+	INCL_NON_REF_SPLICE	NO	39	296	0.15	0.02	0.0567	0.0095	PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B	NCIH2030_LUNG	0.02	0.15	0.0662	TRUE	0	0	0	1	0	FALSE	ACH-000521
NCIH2030_LUNG	APP--MT-ND2	6	0	APP	11599	chr21:27394250:-	MT-ND2	32933	chrM:5227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH2030_LUNG	1	1	0.0567	FALSE	0	1	0	51	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	6	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	1	1	0.0567	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	5	4	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4160	27	0	0.25	0.0473	0.0378	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	0	0.25	0.0851	FALSE	218	210	16	281	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	6	0	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	1	1	0.0567	FALSE	230	193	14	283	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2030_LUNG	1	1	0.0567	FALSE	499	1288	110	792	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TC--MT-TY	6	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0567	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH2030_LUNG	1	1	0.0567	FALSE	51	280	19	36	0	FALSE	ACH-000521
NCIH2030_LUNG	RP11-120D5.1--MID1	6	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0567	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2030_LUNG	1	1	0.0567	FALSE	16	356	14	466	0	FALSE	ACH-000521
NCIH2030_LUNG	RP11-120D5.1--MID1	6	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0567	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2030_LUNG	1	1	0.0567	FALSE	0	48	1	163	0	FALSE	ACH-000521
NCIH2030_LUNG	RP11-123O10.4--GRIP1	5	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0473	0.0378	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2030_LUNG	1	1	0.0851	FALSE	93	270	15	244	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND6--MT-TE	3	11	MT-ND6	1029	chrM:14645:-	MT-TE	4495	chrM:14773:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0.104	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2030_LUNG	1	1	0.1324	FALSE	499	1288	110	792	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	4	6	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	46	0	0.18	1	0.0378	0.0567	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	0.18	1	0.0945	FALSE	213	207	15	279	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	4	6	MT-ND4	1852	chrM:11611:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	11466	0	0	1	0.0378	0.0567	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	0	1	0.0945	FALSE	231	217	16	283	0	FALSE	ACH-000521
NCIH2030_LUNG	RP11-353N4.6--SEC22B	5	2	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	95	173	0.07	0.04	0.0473	0.0189	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	NCIH2030_LUNG	0.04	0.07	0.0662	TRUE	49	42	7	43	0	FALSE	ACH-000521
NCIH2030_LUNG	RP11-96H19.1--RP11-446N19.1	4	6	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0378	0.0567	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2030_LUNG	1	1	0.0945	FALSE	192	492	57	212	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	5	1	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	4	0	0.6	1	0.0473	0.0095	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	0.6	1	0.0568	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	5	1	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	13443	661	0	0.01	0.0473	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	0	0.01	0.0568	FALSE	231	217	16	283	0	FALSE	ACH-000521
NCIH2030_LUNG	FTH1--ACTG1	5	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	NCIH2030_LUNG	1	1	0.0473	TRUE	0	0	0	64	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ATP6--MT-CO1	5	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2030_LUNG	1	1	0.0473	FALSE	183	104	9	328	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ATP6--MT-CO1	5	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2030_LUNG	1	1	0.0473	FALSE	183	104	9	328	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	4	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	11248	5	0	0.62	0.0378	0.0378	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	0	0.62	0.0756	FALSE	231	217	16	283	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	5	0	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	1	1	0.0473	FALSE	231	205	14	283	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2030_LUNG	1	1	0.0473	FALSE	499	1288	110	792	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2030_LUNG	1	1	0.0473	FALSE	499	1288	110	792	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2030_LUNG	1	1	0.0473	FALSE	499	1288	110	792	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TC--MT-TY	5	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0473	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH2030_LUNG	1	1	0.0473	FALSE	51	280	19	36	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	4482	0	0	1	0.0284	0.0662	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	0	1	0.0946	FALSE	222	212	16	282	0	FALSE	ACH-000521
NCIH2030_LUNG	PRR16--CTD-2334D19.1	3	6	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	17	0	0.35	1	0.0284	0.0567	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH2030_LUNG	0.35	1	0.0851	FALSE	21	45	1	60	0	FALSE	ACH-000521
NCIH2030_LUNG	LASP1--MT-ND4L	4	1	LASP1	12953	chr17:37075348:+	MT-ND4L	18704	chrM:10545:+	INCL_NON_REF_SPLICE	YES	295	0	0.02	1	0.0378	0.0095	LASP1->LIM_and_SH3_protein_1,Oncogene{Bushman},chr17:37026112-37078023:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2030_LUNG	0.02	1	0.0473	FALSE	0	0	0	7	0	FALSE	ACH-000521
NCIH2030_LUNG	CALM3--MT-ATP8	4	0	CALM3	8081	chr19:47113583:+	MT-ATP8	11589	chrM:8406:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	1	1	0.0378	FALSE	12	0	0	26	0	FALSE	ACH-000521
NCIH2030_LUNG	EIF1--PPIA	4	0	EIF1	1107	chr17:39845243:+	PPIA	7809	chr7:44836303:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	NCIH2030_LUNG	1	1	0.0378	TRUE	0	0	0	7	0	TRUE	ACH-000521
NCIH2030_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2030_LUNG	1	1	0.0378	FALSE	182	97	9	327	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	1	1	0.0378	FALSE	231	217	16	283	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	1	1	0.0378	FALSE	230	198	14	283	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	1	1	0.0378	FALSE	231	217	16	283	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	3	4	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	NO	11047	390	0	0.02	0.0284	0.0378	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	0	0.02	0.0662	FALSE	231	217	16	283	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2030_LUNG	1	1	0.0378	FALSE	499	1288	110	792	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TA--MT-TN	4	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH2030_LUNG	1	1	0.0378	FALSE	369	2501	205	193	0	FALSE	ACH-000521
NCIH2030_LUNG	TAGLN2--MT-ND4	4	0	TAGLN2	6250	chr1:159888375:-	MT-ND4	10074	chrM:11105:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	TAGLN2->chr1:159887897-159895522:-,transgelin_2,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCIH2030_LUNG	1	1	0.0378	FALSE	0	0	0	2	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	11248	744	0	0.01	0.0284	0.0284	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	0	0.01	0.0568	FALSE	231	217	16	283	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13115	27	0	0.18	0.0284	0.0284	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	0	0.18	0.0568	FALSE	231	217	16	283	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	11117	695	0	0.01	0.0284	0.0284	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	0	0.01	0.0568	FALSE	231	217	16	283	0	FALSE	ACH-000521
NCIH2030_LUNG	CPS1--CFLAR-AS1	3	2	CPS1	26121	chr2:211481265:+	CFLAR-AS1	53402	chr2:202018396:-	ONLY_REF_SPLICE	YES	430	0	0.01	1	0.0284	0.0189	CPS1->carbamoyl-phosphate_synthase_1,chr2:211342406-211543831:+,CFLAR-AS1->CFLAR_antisense_RNA_1,chr2:202005007-202022546:-	NCIH2030_LUNG	0.01	1	0.0473	FALSE	0	0	0	1	0	FALSE	ACH-000521
NCIH2030_LUNG	APP--MT-ND2	3	1	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	1409	91	0	0.04	0.0284	0.0095	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH2030_LUNG	0	0.04	0.0379	FALSE	0	1	0	51	0	FALSE	ACH-000521
NCIH2030_LUNG	IGFBP4--NPM1	3	1	IGFBP4	5135	chr17:38613122:+	NPM1	9745	chr5:170814868:+	INCL_NON_REF_SPLICE	YES	1732	1	0	0.8	0.0284	0.0095	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	NCIH2030_LUNG	0	0.8	0.0379	FALSE	0	0	0	38	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	11823	0	0	1	0.0284	0.0095	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	0	1	0.0379	FALSE	231	217	16	283	0	FALSE	ACH-000521
NCIH2030_LUNG	PRR16--CTD-2334D19.1	2	5	PRR16	5763	chr5:119952887:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	37	0	0.16	1	0.0189	0.0473	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	NCIH2030_LUNG	0.16	1	0.0662	FALSE	0	3	0	8	0	FALSE	ACH-000521
NCIH2030_LUNG	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0.0473	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2030_LUNG	1	1	0.0662	FALSE	467	2173	244	435	0	FALSE	ACH-000521
NCIH2030_LUNG	CCDC81--C11orf73	3	0	CCDC81	11284	chr11:86120407:+	C11orf73	23280	chr11:86017287:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:+:[28809],CCDC81->chr11:86085778-86134151:+,coiled-coil_domain_containing_81,C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73	NCIH2030_LUNG	1	1	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2030_LUNG	1	1	0.0284	FALSE	183	104	9	328	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2030_LUNG	1	1	0.0284	FALSE	183	104	9	328	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2030_LUNG	1	1	0.0284	FALSE	183	104	9	328	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1154	chrM:9360:+	MT-ATP6	5464	chrM:9206:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCIH2030_LUNG	1	1	0.0284	FALSE	189	492	56	216	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1164	chrM:10923:+	MT-ATP8	5455	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	1	1	0.0284	FALSE	230	193	14	283	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	1	1	0.0284	FALSE	231	205	14	283	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2030_LUNG	1	1	0.0284	FALSE	231	204	14	283	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1002	chrM:14672:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH2030_LUNG	1	1	0.0284	FALSE	499	1288	110	792	0	FALSE	ACH-000521
NCIH2030_LUNG	MT-TC--MT-TY	3	0	MT-TC	1075	chrM:5752:-	MT-TY	4124	chrM:5834:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0284	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH2030_LUNG	1	1	0.0284	FALSE	51	280	19	36	0	FALSE	ACH-000521
NCIH2030_LUNG	MYL6--AKT2	3	0	MYL6	2462	chr12:56553406:+	AKT2	22125	chr19:40761176:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	GTEx&tcga_normals:1/3694=0.03%,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,AKT2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr19:40736224-40791443:-,v-akt_murine_thymoma_viral_oncogene_homolog_2	NCIH2030_LUNG	1	1	0.0284	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	RP11-640M9.1--SRGAP2B	3	0	RP11-640M9.1	2197	chr1:144520774:-	SRGAP2B	24229	chr1:143915700:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0284	0	RP11-640M9.1->chr1:144456138-144521970:-,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	NCIH2030_LUNG	1	1	0.0284	TRUE	0	0	0	2	0	TRUE	ACH-000521
NCIH2030_LUNG	RP11-353N4.6--SEC22B	2	3	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	106	200	0.05	0.02	0.0189	0.0284	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	NCIH2030_LUNG	0.02	0.05	0.0473	TRUE	33	36	9	21	0	FALSE	ACH-000521
NCIH2030_LUNG	RP11-353N4.6--SEC22B	2	3	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	95	200	0.05	0.02	0.0189	0.0284	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	NCIH2030_LUNG	0.02	0.05	0.0473	TRUE	33	36	9	21	0	FALSE	ACH-000521
NCIH2030_LUNG	BMPR1B--PDLIM5	2	0	BMPR1B	2171	chr4:95797051:+	PDLIM5	46461	chr4:95539155:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_FI:{Muscle=[count:3=pct:1.3]},GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:+:[89742],BMPR1B->bone_morphogenetic_protein_receptor_type_1B,chr4:95679119-96079599:+,PDLIM5->PDZ_and_LIM_domain_5,chr4:95373037-95589377:+	NCIH2030_LUNG	1	1	0.0189	TRUE	0	2	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	BMS1P10--DNAJB4	2	0	BMS1P10	3343	chr9:67330890:-	DNAJB4	11382	chr1:78446889:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood_Vessel=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Ovary=[count:1=pct:1.9]},BMS1P10->BMS1,_ribosome_biogenesis_factor_pseudogene_10,chr9:67327775-67334983:-,DNAJB4->DnaJ_heat_shock_protein_family_(Hsp40)_member_B4,chr1:78444859-78483648:+	NCIH2030_LUNG	1	1	0.0189	TRUE	2	0	0	1	0	FALSE	ACH-000521
NCIH2030_LUNG	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	NCIH2030_LUNG	1	1	0.0189	TRUE	2	8	0	24	0	FALSE	ACH-000521
NCIH2030_LUNG	CPS1--CFLAR-AS1	2	0	CPS1	25002	chr2:211477017:+	CFLAR-AS1	55254	chr2:202015982:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CPS1->carbamoyl-phosphate_synthase_1,chr2:211342406-211543831:+,CFLAR-AS1->CFLAR_antisense_RNA_1,chr2:202005007-202022546:-	NCIH2030_LUNG	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	CRIM1--FEZ2	2	0	CRIM1	21418	chr2:36764689:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	NCIH2030_LUNG	1	1	0.0189	TRUE	1	4	0	11	0	TRUE	ACH-000521
NCIH2030_LUNG	CYP24A1--DAP3	2	0	CYP24A1	10936	chr20:52773708:-	DAP3	31914	chr1:155708400:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,DAP3->chr1:155657751-155708801:+,death_associated_protein_3	NCIH2030_LUNG	1	1	0.0189	TRUE	0	1	0	3	0	TRUE	ACH-000521
NCIH2030_LUNG	MYL6--RPL30	2	0	MYL6	2462	chr12:56553406:+	RPL30	10407	chr8:99057627:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	GTEx&tcga_normals:2/3694=0.05%,MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	NCIH2030_LUNG	1	1	0.0189	TRUE	0	0	0	2	0	TRUE	ACH-000521
NCIH2030_LUNG	PFDN5--RNF167	2	0	PFDN5	1651	chr12:53689725:+	RNF167	12528	chr17:4847853:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PFDN5->chr12:53689075-53693234:+,prefoldin_subunit_5,RNF167->chr17:4843303-4848517:+,ring_finger_protein_167	NCIH2030_LUNG	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	PTPRG--FLNB	2	0	PTPRG	1804	chr3:61548046:+	FLNB	48974	chr3:58062773:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B	NCIH2030_LUNG	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	RNF40--TKT	2	0	RNF40	10214	chr16:30783511:+	TKT	29234	chr3:53263452:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RNF40->chr16:30773066-30787628:+,ring_finger_protein_40,TKT->chr3:53258723-53290068:-,transketolase	NCIH2030_LUNG	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	RP11-120D5.1--MID1	2	0	RP11-120D5.1	10152	chrX:10878163:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2030_LUNG	1	1	0.0189	FALSE	2	31	0	60	0	FALSE	ACH-000521
NCIH2030_LUNG	RP11-640M9.1--SRGAP2B	2	0	RP11-640M9.1	3158	chr1:144519813:-	SRGAP2B	25838	chr1:144013901:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RP11-640M9.1->chr1:144456138-144521970:-,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	NCIH2030_LUNG	1	1	0.0189	TRUE	0	0	0	1	0	TRUE	ACH-000521
NCIH2030_LUNG	RP11-640M9.1--SRGAP2B	2	0	RP11-640M9.1	3158	chr1:144519813:-	SRGAP2B	24229	chr1:143915700:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0189	0	RP11-640M9.1->chr1:144456138-144521970:-,SRGAP2B->SLIT-ROBO_Rho_GTPase_activating_protein_2B,chr1:143913615-144094424:+	NCIH2030_LUNG	1	1	0.0189	TRUE	0	0	0	2	0	TRUE	ACH-000521
NCIH2030_LUNG	PSKH1--ZC3H14	1	2	PSKH1	4241	chr16:67943609:+	ZC3H14	12944	chr14:89034383:+	ONLY_REF_SPLICE	NO	49	161	0.06	0.02	0.0095	0.0189	PSKH1->chr16:67927175-67963581:+,protein_serine_kinase_H1,ZC3H14->chr14:89029253-89079853:+,zinc_finger_CCCH-type_containing_14	NCIH2030_LUNG	0.02	0.06	0.0284	TRUE	0	0	0	1	0	FALSE	ACH-000521
NCIH2030_LUNG	RP11-275N1.1--NEBL	1	2	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	2	1	0.6	0.75	0.0095	0.0189	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	NCIH2030_LUNG	0.6	0.75	0.0284	TRUE	0	2	0	25	2	FALSE	ACH-000521
NCIH2030_LUNG	RP11-275N1.1--NEBL	1	2	RP11-275N1.1	4358	chr10:21643600:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	NO	0	1	1	0.75	0.0095	0.0189	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	NCIH2030_LUNG	0.75	1	0.0284	TRUE	0	0	0	2	0	TRUE	ACH-000521
NCIH2030_LUNG	AC002066.1--AC073130.1	1	1	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	4	0	0.33	1	0.0095	0.0095	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	NCIH2030_LUNG	0.33	1	0.019	FALSE	0	3	0	33	0	FALSE	ACH-000521
NCIH2030_LUNG	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	7488	chr5:95966789:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	7	1	0.22	0.0095	0.0095	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH2030_LUNG	0.22	1	0.019	TRUE	18	50	10	12	0	FALSE	ACH-000521
NCIH2030_LUNG	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	NO	0	7	1	0.22	0.0095	0.0095	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH2030_LUNG	0.22	1	0.019	TRUE	347	1186	183	220	0	FALSE	ACH-000521
NCIH2030_LUNG	DNM2--ILF3	1	1	DNM2	24487	chr19:10919256:+	ILF3	51425	chr19:10793213:+	ONLY_REF_SPLICE	YES	121	301	0.02	0.01	0.0095	0.0095	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:+:[25662],DNM2->chr19:10828755-10944164:+,dynamin_2,ILF3->chr19:10764937-10803093:+,interleukin_enhancer_binding_factor_3	NCIH2030_LUNG	0.01	0.02	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000521
NCIH2030_LUNG	INADL--DOCK7	1	1	INADL	39029	chr1:62516730:+	DOCK7	74489	chr1:63052295:-	ONLY_REF_SPLICE	YES	27	20	0.07	0.09	0.0095	0.0095	INADL->Oncogene{Bushman},chr1:62208149-62629592:+,DOCK7->chr1:62920399-63153969:-,dedicator_of_cytokinesis_7	NCIH2030_LUNG	0.07	0.09	0.019	TRUE	0	0	0	1	0	FALSE	ACH-000521
NCIH2030_LUNG	RP11-219B17.1--ANXA2	1	1	RP11-219B17.1	3415	chr15:60802732:+	ANXA2	32610	chr15:60656722:-	ONLY_REF_SPLICE	YES	2	1844	0.5	0	0.0095	0.0095	LOCAL_INVERSION:+:-:[76295],RP11-219B17.1->chr15:60771377-60922836:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	NCIH2030_LUNG	0	0.5	0.019	FALSE	0	0	0	1	0	FALSE	ACH-000521
RH18_SOFT_TISSUE	VDR--CACNA2D4	1092	507	VDR	5027	chr12:48276477:-	CACNA2D4	44232	chr12:1919753:-	ONLY_REF_SPLICE	YES	283	3	0.85	1	10.4399	4.8471	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.85	1	15.287	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	308	398	VDR	5027	chr12:48276477:-	CACNA2D4	44479	chr12:1919506:-	ONLY_REF_SPLICE	YES	283	27	0.71	0.96	2.9446	3.805	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.71	0.96	6.7496	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CCT2--MYRFL	310	100	CCT2	7973	chr12:69987393:+	MYRFL	33996	chr12:70345893:+	ONLY_REF_SPLICE	YES	5841	18	0.07	0.96	2.9637	0.956	CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+,MYRFL->chr12:70219084-70352877:+,myelin_regulatory_factor-like	RH18_SOFT_TISSUE	0.07	0.96	3.9197	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	R3HDM2--LRP1	243	14	R3HDM2	1286	chr12:57824503:-	LRP1	83207	chr12:57598892:+	ONLY_REF_SPLICE	YES	2	495	0.99	0.34	2.3232	0.1338	LOCAL_INVERSION:-:+:[36258],R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,LRP1->LDL_receptor_related_protein_1,chr12:57522276-57607134:+	RH18_SOFT_TISSUE	0.34	0.99	2.457	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--MARS	209	100	FRS2	1182	chr12:69864310:+	MARS	26756	chr12:57881720:+	ONLY_REF_SPLICE	YES	540	8	0.36	0.97	1.9981	0.956	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	RH18_SOFT_TISSUE	0.36	0.97	2.9541	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	80	521	VDR	5027	chr12:48276477:-	CACNA2D4	43170	chr12:1920889:-	ONLY_REF_SPLICE	YES	283	37	0.68	0.94	0.7648	4.981	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.68	0.94	5.7458	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	PLD3--CTC-490E21.13	179	55	PLD3	7024	chr19:40876144:+	CTC-490E21.13	17426	chr19:41416592:-	ONLY_REF_SPLICE	YES	483	0	0.33	1	1.7113	0.5258	PLD3->chr19:40854363-40886346:+,phospholipase_D_family_member_3,CTC-490E21.13->chr19:41414377-41416754:-	RH18_SOFT_TISSUE	0.33	1	2.2371	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	TIMM23B--LINC00843	161	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.5392	0.2964	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RH18_SOFT_TISSUE	0.99	1	1.8356	TRUE	508	994	45	981	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	130	68	FRS2	1182	chr12:69864310:+	RAB3IP	37080	chr12:70206744:+	ONLY_REF_SPLICE	YES	540	215	0.27	0.48	1.2428	0.6501	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.27	0.48	1.8929	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CNOT2--LRTM2	83	71	CNOT2	3472	chr12:70672054:+	LRTM2	38903	chr12:1936576:+	ONLY_REF_SPLICE	YES	177	5	0.47	0.97	0.7935	0.6788	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,LRTM2->chr12:1929433-1945918:+,leucine-rich_repeats_and_transmembrane_domains_2	RH18_SOFT_TISSUE	0.47	0.97	1.4723	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	TIMM23--RP11-464F9.1	96	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	204	3	0.33	0.97	0.9178	0.0287	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RH18_SOFT_TISSUE	0.33	0.97	0.9465	TRUE	519	3926	326	965	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	CNOT2--LRTM2	71	75	CNOT2	3472	chr12:70672054:+	LRTM2	38900	chr12:1936573:+	ONLY_REF_SPLICE	YES	177	7	0.45	0.95	0.6788	0.717	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,LRTM2->chr12:1929433-1945918:+,leucine-rich_repeats_and_transmembrane_domains_2	RH18_SOFT_TISSUE	0.45	0.95	1.3958	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	MT-TA--MT-TC	73	13	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6979	0.1243	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RH18_SOFT_TISSUE	1	1	0.8222	FALSE	462	80	0	856	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	RP1-197B17.3--SENP1	70	4	RP1-197B17.3	1079	chr12:48099946:+	SENP1	20013	chr12:48482743:-	ONLY_REF_SPLICE	YES	0	18	1	0.8	0.6692	0.0382	RP1-197B17.3->chr12:48099868-48136077:+,SENP1->SUMO1/sentrin_specific_peptidase_1,chr12:48436681-48500091:-	RH18_SOFT_TISSUE	0.8	1	0.7074	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--BEST3	61	36	FRS2	1182	chr12:69864310:+	BEST3	32716	chr12:70072673:-	ONLY_REF_SPLICE	YES	540	67	0.15	0.59	0.5832	0.3442	LOCAL_INVERSION:+:-:[63578],FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,BEST3->bestrophin_3,chr12:70037140-70093256:-	RH18_SOFT_TISSUE	0.15	0.59	0.9274	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	51	76	FRS2	1182	chr12:69864310:+	RAB3IP	36894	chr12:70206558:+	ONLY_REF_SPLICE	YES	540	119	0.19	0.52	0.4876	0.7266	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.19	0.52	1.2142	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	17	212	VDR	5027	chr12:48276477:-	CACNA2D4	46967	chr12:1910284:-	ONLY_REF_SPLICE	YES	283	180	0.45	0.56	0.1625	2.0268	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.45	0.56	2.1893	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	COL1A2--COL16A1	49	1	COL1A2	22079	chr7:94049598:+	COL16A1	71320	chr1:32126239:-	ONLY_REF_SPLICE	NO	7585	288	0.01	0.15	0.4685	0.0096	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1	RH18_SOFT_TISSUE	0.01	0.15	0.4781	TRUE	0	0	0	2	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	EEF1DP3--FRY	46	10	EEF1DP3	3331	chr13:32520318:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	2	2	0.97	0.97	0.4398	0.0956	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	RH18_SOFT_TISSUE	0.97	0.97	0.5354	FALSE	20	24	2	21	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	NUP107--BEST3	40	26	NUP107	4643	chr12:69084526:+	BEST3	38243	chr12:70078388:-	ONLY_REF_SPLICE	YES	368	88	0.15	0.43	0.3824	0.2486	NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa,BEST3->bestrophin_3,chr12:70037140-70093256:-	RH18_SOFT_TISSUE	0.15	0.43	0.631	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--MT-TE	43	10	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.4111	0.0956	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH18_SOFT_TISSUE	0.98	1	0.5067	FALSE	499	1288	110	792	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	CCNT1--RP11-320P7.2	38	8	CCNT1	4800	chr12:49094796:-	RP11-320P7.2	19488	chr12:70593513:+	ONLY_REF_SPLICE	YES	577	1	0.07	0.98	0.3633	0.0765	CCNT1->Oncogene{Bushman},chr12:49082247-49110681:-,cyclin_T1,RP11-320P7.2->chr12:70574118-70595784:+	RH18_SOFT_TISSUE	0.07	0.98	0.4398	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	OR51S1--TP53I11	35	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3346	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	RH18_SOFT_TISSUE	1	1	0.3346	TRUE	402	216	10	229	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	FRS2--MARS	9	102	FRS2	1182	chr12:69864310:+	MARS	26205	chr12:57881169:+	ONLY_REF_SPLICE	YES	540	2	0.17	0.98	0.086	0.9752	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	RH18_SOFT_TISSUE	0.17	0.98	1.0612	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CCT2--MYRFL	8	97	CCT2	7973	chr12:69987393:+	MYRFL	33999	chr12:70345896:+	ONLY_REF_SPLICE	YES	5841	18	0.02	0.85	0.0765	0.9274	CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+,MYRFL->chr12:70219084-70352877:+,myelin_regulatory_factor-like	RH18_SOFT_TISSUE	0.02	0.85	1.0039	TRUE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	PLXDC1--TAF13	32	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3059	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	RH18_SOFT_TISSUE	1	1	0.3059	TRUE	7	10	0	216	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	FRS2--MARS	4	109	FRS2	4453	chr12:69885431:+	MARS	26205	chr12:57881169:+	ONLY_REF_SPLICE	YES	733	2	0.13	0.98	0.0382	1.0421	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	RH18_SOFT_TISSUE	0.13	0.98	1.0803	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--MT-TE	27	12	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2581	0.1147	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH18_SOFT_TISSUE	0.97	1	0.3728	FALSE	499	1288	110	792	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--MT-TE	25	19	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.239	0.1816	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH18_SOFT_TISSUE	0.96	1	0.4206	FALSE	499	1288	110	792	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	FRS2--MARS	2	107	FRS2	4453	chr12:69885431:+	MARS	26756	chr12:57881720:+	ONLY_REF_SPLICE	NO	733	8	0.13	0.93	0.0191	1.023	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	RH18_SOFT_TISSUE	0.13	0.93	1.0421	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	NRIP1--AF127936.7	28	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.89	1	0.2677	0.0287	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RH18_SOFT_TISSUE	0.89	1	0.2964	FALSE	292	1546	117	613	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	FRS2--MARS	3	102	FRS2	2243	chr12:69874139:+	MARS	26756	chr12:57881720:+	ONLY_REF_SPLICE	YES	749	8	0.12	0.93	0.0287	0.9752	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	RH18_SOFT_TISSUE	0.12	0.93	1.0039	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CCNT1--RP11-89H19.1	25	13	CCNT1	2466	chr12:49108226:-	RP11-89H19.1	20788	chr12:48292128:+	ONLY_REF_SPLICE	YES	624	2	0.06	0.95	0.239	0.1243	CCNT1->Oncogene{Bushman},chr12:49082247-49110681:-,cyclin_T1,RP11-89H19.1->chr12:48276432-48295308:+	RH18_SOFT_TISSUE	0.06	0.95	0.3633	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	MT-TA--MT-TN	21	25	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2008	0.239	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RH18_SOFT_TISSUE	1	1	0.4398	FALSE	369	2501	205	193	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	QKI--CCNT1	23	15	QKI	2336	chr6:163836367:+	CCNT1	33362	chr12:49099679:-	ONLY_REF_SPLICE	YES	92	631	0.29	0.06	0.2199	0.1434	QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,CCNT1->Oncogene{Bushman},chr12:49082247-49110681:-,cyclin_T1	RH18_SOFT_TISSUE	0.06	0.29	0.3633	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	5	85	FRS2	4453	chr12:69885431:+	RAB3IP	36894	chr12:70206558:+	ONLY_REF_SPLICE	YES	734	119	0.11	0.43	0.0478	0.8126	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.11	0.43	0.8604	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	7	76	FRS2	2243	chr12:69874139:+	RAB3IP	36894	chr12:70206558:+	ONLY_REF_SPLICE	YES	750	119	0.1	0.41	0.0669	0.7266	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.1	0.41	0.7935	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	6	75	FRS2	4453	chr12:69885431:+	RAB3IP	37080	chr12:70206744:+	ONLY_REF_SPLICE	YES	734	215	0.1	0.27	0.0574	0.717	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.1	0.27	0.7744	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	PGP--MLST8	24	3	PGP	3855	chr16:2261954:-	MLST8	9176	chr16:2256613:+	INCL_NON_REF_SPLICE	YES	0	56	1	0.33	0.2294	0.0287	LOCAL_INVERSION:-:+:[2581],PGP->chr16:2261998-2264808:-,phosphoglycolate_phosphatase,MLST8->MTOR_associated_protein,_LST8_homolog,chr16:2254249-2259417:+	RH18_SOFT_TISSUE	0.33	1	0.2581	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	6	74	FRS2	4429	chr12:69885407:+	RAB3IP	37080	chr12:70206744:+	INCL_NON_REF_SPLICE	YES	733	215	0.1	0.27	0.0574	0.7075	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.1	0.27	0.7649	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	RP11-680G10.1--GSE1	22	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.86	0.2103	0.0765	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RH18_SOFT_TISSUE	0.86	1	0.2868	TRUE	458	1351	185	561	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-TA--MT-TN	6	68	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0.6501	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RH18_SOFT_TISSUE	1	1	0.7075	FALSE	369	2501	205	193	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	5	71	FRS2	3339	chr12:69880077:+	RAB3IP	37080	chr12:70206744:+	ONLY_REF_SPLICE	YES	743	215	0.09	0.26	0.0478	0.6788	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.09	0.26	0.7266	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CNOT2--LRTM2	3	77	CNOT2	7136	chr12:70688074:+	LRTM2	38900	chr12:1936573:+	ONLY_REF_SPLICE	YES	85	7	0.48	0.92	0.0287	0.7361	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,LRTM2->chr12:1929433-1945918:+,leucine-rich_repeats_and_transmembrane_domains_2	RH18_SOFT_TISSUE	0.48	0.92	0.7648	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	3	76	FRS2	1189	chr12:69864317:+	RAB3IP	36894	chr12:70206558:+	INCL_NON_REF_SPLICE	YES	747	119	0.1	0.4	0.0287	0.7266	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.1	0.4	0.7553	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CNOT2--LRTM2	3	73	CNOT2	7136	chr12:70688074:+	LRTM2	38903	chr12:1936576:+	ONLY_REF_SPLICE	YES	85	5	0.47	0.94	0.0287	0.6979	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,LRTM2->chr12:1929433-1945918:+,leucine-rich_repeats_and_transmembrane_domains_2	RH18_SOFT_TISSUE	0.47	0.94	0.7266	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	1	80	FRS2	3339	chr12:69880077:+	RAB3IP	36894	chr12:70206558:+	ONLY_REF_SPLICE	YES	743	119	0.1	0.41	0.0096	0.7648	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.1	0.41	0.7744	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--MARS	20	3	FRS2	1182	chr12:69864310:+	MARS	29026	chr12:57883990:+	ONLY_REF_SPLICE	YES	540	643	0.04	0.03	0.1912	0.0287	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	RH18_SOFT_TISSUE	0.03	0.04	0.2199	TRUE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	19	7	VDR	2272	chr12:48298738:-	CACNA2D4	44232	chr12:1919753:-	ONLY_REF_SPLICE	YES	1	3	0.96	0.9	0.1816	0.0669	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.9	0.96	0.2485	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CNOT2--LRTM2	17	6	CNOT2	3472	chr12:70672054:+	LRTM2	42300	chr12:1943433:+	ONLY_REF_SPLICE	YES	177	100	0.12	0.19	0.1625	0.0574	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,LRTM2->chr12:1929433-1945918:+,leucine-rich_repeats_and_transmembrane_domains_2	RH18_SOFT_TISSUE	0.12	0.19	0.2199	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	1	68	FRS2	2243	chr12:69874139:+	RAB3IP	37080	chr12:70206744:+	ONLY_REF_SPLICE	NO	750	215	0.08	0.24	0.0096	0.6501	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.08	0.24	0.6597	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	PRR16--CTD-2334D19.1	17	3	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	87	0	0.19	1	0.1625	0.0287	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	RH18_SOFT_TISSUE	0.19	1	0.1912	FALSE	56	216	12	147	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	SAMD5--SASH1	17	2	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	8	7	0.7	0.73	0.1625	0.0191	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	RH18_SOFT_TISSUE	0.7	0.73	0.1816	TRUE	53	396	64	110	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	5	49	VDR	3785	chr12:48293620:-	CACNA2D4	44232	chr12:1919753:-	ONLY_REF_SPLICE	YES	64	3	0.46	0.95	0.0478	0.4685	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.46	0.95	0.5163	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	DHRS7--EIF2S1	14	11	DHRS7	3289	chr14:60631895:-	EIF2S1	16619	chr14:67831484:+	ONLY_REF_SPLICE	YES	313	92	0.07	0.21	0.1338	0.1052	DHRS7->chr14:60610838-60636574:-,dehydrogenase/reductase_(SDR_family)_member_7,EIF2S1->chr14:67826714-67853233:+,eukaryotic_translation_initiation_factor_2_subunit_alpha	RH18_SOFT_TISSUE	0.07	0.21	0.239	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	YEATS4--RP11-370I10.6	15	4	YEATS4	7243	chr12:69764755:+	RP11-370I10.6	14828	chr12:48835870:+	ONLY_REF_SPLICE	YES	655	0	0.03	1	0.1434	0.0382	YEATS4->YEATS_domain_containing_4,chr12:69753483-69784576:+,RP11-370I10.6->chr12:48744728-48836194:+	RH18_SOFT_TISSUE	0.03	1	0.1816	TRUE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	RP11-680G10.1--GSE1	14	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	27	1	0.44	0.1338	0.0669	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RH18_SOFT_TISSUE	0.44	1	0.2007	TRUE	465	1949	224	605	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	COL1A2--COL16A1	15	2	COL1A2	23728	chr7:94051247:+	COL16A1	53451	chr1:32149576:-	INCL_NON_REF_SPLICE	NO	9013	304	0	0.05	0.1434	0.0191	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1	RH18_SOFT_TISSUE	0	0.05	0.1625	FALSE	0	1	1	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	FRS2--BEST3	6	37	FRS2	2243	chr12:69874139:+	BEST3	32716	chr12:70072673:-	ONLY_REF_SPLICE	YES	749	67	0.05	0.39	0.0574	0.3537	LOCAL_INVERSION:+:-:[63578],FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,BEST3->bestrophin_3,chr12:70037140-70093256:-	RH18_SOFT_TISSUE	0.05	0.39	0.4111	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--MT-TE	6	36	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0574	0.3442	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH18_SOFT_TISSUE	0.95	1	0.4016	FALSE	499	1288	110	792	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	FRS2--MARS	4	43	FRS2	1182	chr12:69864310:+	MARS	26849	chr12:57881813:+	INCL_NON_REF_SPLICE	YES	540	22	0.08	0.68	0.0382	0.4111	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	RH18_SOFT_TISSUE	0.08	0.68	0.4493	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--COL1A2	14	3	MT-ND6	1313	chrM:14361:-	COL1A2	30434	chr7:94054428:+	INCL_NON_REF_SPLICE	YES	4469	9720	0	0	0.1338	0.0287	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	RH18_SOFT_TISSUE	0	0	0.1625	FALSE	0	1	0	7	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	13	6	VDR	2272	chr12:48298738:-	CACNA2D4	44479	chr12:1919506:-	ONLY_REF_SPLICE	YES	1	27	0.95	0.41	0.1243	0.0574	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.41	0.95	0.1817	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	MT-TA--MT-TN	5	34	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0478	0.3251	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RH18_SOFT_TISSUE	1	1	0.3729	FALSE	369	2501	205	193	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	APP--MT-CO3	12	5	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	3302	11677	0.01	0	0.1147	0.0478	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	RH18_SOFT_TISSUE	0	0.01	0.1625	FALSE	0	0	0	26	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	FRS2--MARS	8	20	FRS2	1182	chr12:69864310:+	MARS	27838	chr12:57882802:+	ONLY_REF_SPLICE	YES	540	690	0.05	0.04	0.0765	0.1912	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	RH18_SOFT_TISSUE	0.04	0.05	0.2677	TRUE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--MT-TE	4	34	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0382	0.3251	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH18_SOFT_TISSUE	0.95	1	0.3633	FALSE	499	1288	110	792	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	CTD-2337A12.1--CAST	11	5	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	58	1	0.22	0.1052	0.0478	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	RH18_SOFT_TISSUE	0.22	1	0.153	TRUE	347	1186	183	220	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	FRS2--BEST3	3	37	FRS2	4429	chr12:69885407:+	BEST3	32716	chr12:70072673:-	INCL_NON_REF_SPLICE	YES	732	67	0.05	0.37	0.0287	0.3537	LOCAL_INVERSION:+:-:[63578],FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,BEST3->bestrophin_3,chr12:70037140-70093256:-	RH18_SOFT_TISSUE	0.05	0.37	0.3824	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--MT-TE	3	36	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.0287	0.3442	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH18_SOFT_TISSUE	0.93	1	0.3729	FALSE	499	1288	110	792	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	CCNT1--RP11-89H19.1	8	15	CCNT1	2466	chr12:49108226:-	RP11-89H19.1	19351	chr12:48290390:+	ONLY_REF_SPLICE	YES	624	0	0.04	1	0.0765	0.1434	CCNT1->Oncogene{Bushman},chr12:49082247-49110681:-,cyclin_T1,RP11-89H19.1->chr12:48276432-48295308:+	RH18_SOFT_TISSUE	0.04	1	0.2199	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--MT-TE	5	27	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0478	0.2581	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH18_SOFT_TISSUE	0.97	1	0.3059	FALSE	499	1288	110	792	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-TA--MT-TC	9	11	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.086	0.1052	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RH18_SOFT_TISSUE	1	1	0.1912	FALSE	462	80	0	856	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-TA--MT-TC	8	15	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0765	0.1434	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RH18_SOFT_TISSUE	1	1	0.2199	FALSE	462	80	0	856	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	2	38	VDR	3785	chr12:48293620:-	CACNA2D4	44479	chr12:1919506:-	ONLY_REF_SPLICE	YES	64	27	0.38	0.6	0.0191	0.3633	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.38	0.6	0.3824	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	HSP90AB1--MT-RNR2	11	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1052	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RH18_SOFT_TISSUE	1	1	0.1052	FALSE	13	9	0	364	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-TA--MT-TC	7	16	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0669	0.153	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RH18_SOFT_TISSUE	1	1	0.2199	FALSE	462	80	0	856	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	ZNF776--NLRP4	9	7	ZNF776	8323	chr19:58268366:+	NLRP4	19766	chr19:56379075:+	INCL_NON_REF_SPLICE	YES	13	0	0.55	1	0.086	0.0669	ZNF776->chr19:58258164-58269527:+,zinc_finger_protein_776,NLRP4->NLR_family,_pyrin_domain_containing_4,chr19:56347944-56393220:+	RH18_SOFT_TISSUE	0.55	1	0.1529	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	NUP107--BEST3	4	25	NUP107	4643	chr12:69084526:+	BEST3	38247	chr12:70078384:-	INCL_NON_REF_SPLICE	YES	368	88	0.07	0.25	0.0382	0.239	NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa,BEST3->bestrophin_3,chr12:70037140-70093256:-	RH18_SOFT_TISSUE	0.07	0.25	0.2772	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	TTLL5--RP11-611E13.2	9	5	TTLL5	30515	chr14:76224212:+	RP11-611E13.2	59305	chr12:70298199:-	ONLY_REF_SPLICE	YES	17	0	0.45	1	0.086	0.0478	TTLL5->chr14:76099968-76421421:+,tubulin_tyrosine_ligase_like_5,RP11-611E13.2->chr12:70297813-70637140:-	RH18_SOFT_TISSUE	0.45	1	0.1338	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	SERPINE1--MT-ND4	10	0	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0956	0	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	RH18_SOFT_TISSUE	1	1	0.0956	FALSE	1	0	0	29	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	FRS2--RAB3IP	2	31	FRS2	1182	chr12:69864310:+	RAB3IP	38150	chr12:70209144:+	ONLY_REF_SPLICE	YES	540	231	0.06	0.12	0.0191	0.2964	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+	RH18_SOFT_TISSUE	0.06	0.12	0.3155	TRUE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	NUP107--BEST3	9	3	NUP107	4643	chr12:69084526:+	BEST3	40613	chr12:70072673:-	ONLY_REF_SPLICE	YES	368	67	0.03	0.15	0.086	0.0287	NUP107->chr12:69080514-69136785:+,nucleoporin_107kDa,BEST3->bestrophin_3,chr12:70037140-70093256:-	RH18_SOFT_TISSUE	0.03	0.15	0.1147	TRUE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--MT-TE	3	23	MT-ND6	1126	chrM:14548:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0287	0.2199	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH18_SOFT_TISSUE	0.93	1	0.2486	FALSE	499	1288	110	792	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-TA--MT-TC	8	3	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0765	0.0287	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RH18_SOFT_TISSUE	1	1	0.1052	FALSE	462	80	0	856	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	PLD3--CTC-490E21.13	6	8	PLD3	5694	chr19:40873786:+	CTC-490E21.13	17426	chr19:41416592:-	ONLY_REF_SPLICE	YES	506	0	0.03	1	0.0574	0.0765	PLD3->chr19:40854363-40886346:+,phospholipase_D_family_member_3,CTC-490E21.13->chr19:41414377-41416754:-	RH18_SOFT_TISSUE	0.03	1	0.1339	TRUE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	RP11-89H19.1--MDM2	8	0	RP11-89H19.1	1064	chr12:48276495:+	MDM2	10411	chr12:69207334:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0765	0	RP11-89H19.1->chr12:48276432-48295308:+,MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+	RH18_SOFT_TISSUE	1	1	0.0765	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--MT-TE	3	19	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0287	0.1816	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH18_SOFT_TISSUE	0.92	1	0.2103	FALSE	499	1288	110	792	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--MT-TE	3	19	MT-ND6	1265	chrM:14409:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0287	0.1816	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH18_SOFT_TISSUE	0.92	1	0.2103	FALSE	499	1288	110	792	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-TA--MT-TC	4	15	MT-TA	1054	chrM:5602:-	MT-TC	4006	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0382	0.1434	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RH18_SOFT_TISSUE	1	1	0.1816	FALSE	462	80	0	856	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	DSCR4--KCNJ6	7	2	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	34	13	0.21	0.41	0.0669	0.0191	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	RH18_SOFT_TISSUE	0.21	0.41	0.086	FALSE	0	24	0	27	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--COL1A2	7	2	MT-ND6	1303	chrM:14371:-	COL1A2	23058	chr7:94047052:+	INCL_NON_REF_SPLICE	YES	4791	7116	0	0	0.0669	0.0191	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	RH18_SOFT_TISSUE	0	0	0.086	FALSE	0	1	0	2	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	RAB3IP--RPAP3	7	1	RAB3IP	8908	chr12:70189124:+	RPAP3	42947	chr12:48061634:-	ONLY_REF_SPLICE	YES	136	481	0.06	0.02	0.0669	0.0096	RAB3IP->RAB3A_interacting_protein,chr12:70132461-70216984:+,RPAP3->RNA_polymerase_II_associated_protein_3,chr12:48057070-48099844:-	RH18_SOFT_TISSUE	0.02	0.06	0.0765	TRUE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-CO1--MT-RNR2	5	8	MT-CO1	1631	chrM:6534:+	MT-RNR2	5579	chrM:1707:+	INCL_NON_REF_SPLICE	YES	19178	0	0	1	0.0478	0.0765	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RH18_SOFT_TISSUE	0	1	0.1243	FALSE	44	51	6	21	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-TA--MT-TN	7	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0669	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RH18_SOFT_TISSUE	1	1	0.0669	FALSE	369	2501	205	193	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	7	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0669	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RH18_SOFT_TISSUE	1	1	0.0669	FALSE	515	4851	409	746	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	NRIP1--AF127936.7	4	11	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.47	1	0.0382	0.1052	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RH18_SOFT_TISSUE	0.47	1	0.1434	FALSE	164	806	69	479	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	ADCY6--COL2A1	6	2	ADCY6	3691	chr12:49176354:-	COL2A1	42515	chr12:48372181:-	ONLY_REF_SPLICE	YES	773	23	0.01	0.26	0.0574	0.0191	ADCY6->adenylate_cyclase_6,chr12:49159975-49182820:-,COL2A1->chr12:48366748-48398269:-,collagen_type_II_alpha_1	RH18_SOFT_TISSUE	0.01	0.26	0.0765	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-TA--MT-TC	3	14	MT-TA	1049	chrM:5607:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.1338	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RH18_SOFT_TISSUE	1	1	0.1625	FALSE	462	80	0	856	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	RP1-34H18.1--NAV3	6	1	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	3	1	0.7	0.0574	0.0096	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	RH18_SOFT_TISSUE	0.7	1	0.067	TRUE	254	575	65	124	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	2	17	VDR	2663	chr12:48298347:-	CACNA2D4	44232	chr12:1919753:-	ONLY_REF_SPLICE	YES	15	3	0.56	0.86	0.0191	0.1625	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.56	0.86	0.1816	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--MARS	1	20	FRS2	2243	chr12:69874139:+	MARS	27838	chr12:57882802:+	ONLY_REF_SPLICE	YES	749	690	0.03	0.03	0.0096	0.1912	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	RH18_SOFT_TISSUE	0.03	0.03	0.2008	TRUE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	HSP90AB1--MT-RNR2	6	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0574	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RH18_SOFT_TISSUE	1	1	0.0574	FALSE	13	9	0	364	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-CO1--MT-RNR2	4	8	MT-CO1	1653	chrM:6556:+	MT-RNR2	5571	chrM:1699:+	INCL_NON_REF_SPLICE	YES	20671	0	0	1	0.0382	0.0765	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RH18_SOFT_TISSUE	0	1	0.1147	FALSE	44	51	6	21	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-CO1--MT-RNR2	4	7	MT-CO1	1642	chrM:6545:+	MT-RNR2	6082	chrM:2210:+	INCL_NON_REF_SPLICE	YES	20184	10065	0	0	0.0382	0.0669	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RH18_SOFT_TISSUE	0	0	0.1051	FALSE	44	51	6	21	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--COL1A2	5	3	MT-ND6	1320	chrM:14354:-	COL1A2	29696	chr7:94053690:+	INCL_NON_REF_SPLICE	NO	4191	9080	0	0	0.0478	0.0287	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	RH18_SOFT_TISSUE	0	0	0.0765	FALSE	0	1	0	7	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	APP--MT-ND2	5	2	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	3155	6231	0	0	0.0478	0.0191	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	RH18_SOFT_TISSUE	0	0	0.0669	FALSE	0	1	0	51	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	CNOT2--LRTM2	3	10	CNOT2	3472	chr12:70672054:+	LRTM2	40709	chr12:1940101:+	ONLY_REF_SPLICE	YES	177	135	0.07	0.09	0.0287	0.0956	CNOT2->CCR4-NOT_transcription_complex_subunit_2,chr12:70636774-70748773:+,LRTM2->chr12:1929433-1945918:+,leucine-rich_repeats_and_transmembrane_domains_2	RH18_SOFT_TISSUE	0.07	0.09	0.1243	TRUE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	APP--MT-ND2	5	1	APP	11619	chr21:27394230:-	MT-ND2	32998	chrM:5292:+	INCL_NON_REF_SPLICE	YES	3030	5515	0	0	0.0478	0.0096	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	RH18_SOFT_TISSUE	0	0	0.0574	FALSE	0	1	0	51	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	HELZ--TNRC6C	5	1	HELZ	14505	chr17:65184435:-	TNRC6C	51790	chr17:76000251:+	INCL_NON_REF_SPLICE	YES	31	0	0.16	1	0.0478	0.0096	HELZ->chr17:65066554-65242105:-,helicase_with_zinc_finger,TNRC6C->chr17:76000249-76104916:+,trinucleotide_repeat_containing_6C	RH18_SOFT_TISSUE	0.16	1	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	IFT81--ACTN1	5	1	IFT81	25650	chr12:110655992:+	ACTN1	49687	chr14:69352292:-	INCL_NON_REF_SPLICE	YES	10	1112	0.38	0.01	0.0478	0.0096	IFT81->chr12:110562140-110656602:+,intraflagellar_transport_81,ACTN1->actinin_alpha_1,chr14:69340860-69446157:-	RH18_SOFT_TISSUE	0.01	0.38	0.0574	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	RPAP3--CPM	5	1	RPAP3	16663	chr12:48062699:-	CPM	34805	chr12:69252851:-	ONLY_REF_SPLICE	YES	452	10	0.01	0.38	0.0478	0.0096	RPAP3->RNA_polymerase_II_associated_protein_3,chr12:48057070-48099844:-,CPM->carboxypeptidase_M,chr12:69235977-69365350:-	RH18_SOFT_TISSUE	0.01	0.38	0.0574	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	CDH13--PLCG2	5	0	CDH13	1335	chr16:82660742:+	PLCG2	50670	chr16:81914515:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0478	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,PLCG2->ArcherDX_panel,FoundationOne_panel,chr16:81772702-81991899:+,phospholipase_C_gamma_2	RH18_SOFT_TISSUE	1	1	0.0478	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	MT-TA--MT-TN	5	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0478	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RH18_SOFT_TISSUE	1	1	0.0478	FALSE	369	2501	205	193	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-CO1--MT-RNR2	4	3	MT-CO1	1453	chrM:6356:+	MT-RNR2	6134	chrM:2262:+	INCL_NON_REF_SPLICE	YES	18218	10175	0	0	0.0382	0.0287	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RH18_SOFT_TISSUE	0	0	0.0669	FALSE	44	51	6	21	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-CO1--MT-RNR2	3	7	MT-CO1	1699	chrM:6602:+	MT-RNR2	6090	chrM:2218:+	INCL_NON_REF_SPLICE	YES	19994	10733	0	0	0.0287	0.0669	LOCAL_REARRANGEMENT:+:[2675],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RH18_SOFT_TISSUE	0	0	0.0956	FALSE	44	51	6	21	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	APP--MT-ND2	4	2	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	3302	4623	0	0	0.0382	0.0191	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	RH18_SOFT_TISSUE	0	0	0.0573	FALSE	0	1	0	51	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	ELN--MT-ND4L	4	2	ELN	25792	chr7:73483115:+	MT-ND4L	29915	chrM:10470:+	INCL_NON_REF_SPLICE	YES	2380	0	0	1	0.0382	0.0191	ELN->Oncogene{Bushman},chr7:73442119-73484237:+,elastin,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RH18_SOFT_TISSUE	0	1	0.0573	FALSE	0	0	0	2	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MDM2--RP11-13A1.3	4	1	MDM2	9036	chr12:69218431:+	RP11-13A1.3	24669	chr12:89445044:-	ONLY_REF_SPLICE	YES	2176	0	0	1	0.0382	0.0096	MDM2->ArcherDX_panel,FoundationOne_panel,MDM2_proto-oncogene,Oncogene{Bushman},chr12:69201956-69239214:+,RP11-13A1.3->chr12:89441964-89703330:-	RH18_SOFT_TISSUE	0	1	0.0478	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--MT-TE	4	1	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0382	0.0096	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH18_SOFT_TISSUE	0.83	1	0.0478	FALSE	499	1288	110	792	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0382	0.0096	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RH18_SOFT_TISSUE	0.83	1	0.0478	FALSE	407	2205	196	549	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	APP--MT-ND2	3	4	APP	11652	chr21:27394197:-	MT-ND2	33030	chrM:5324:+	INCL_NON_REF_SPLICE	YES	3657	4466	0	0	0.0287	0.0382	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	RH18_SOFT_TISSUE	0	0	0.0669	FALSE	0	1	0	51	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	EDF1--TPRN	4	0	EDF1	2690	chr9:139757740:-	TPRN	13208	chr9:140087143:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0	{Klijn_CCL:Colo-Rectal=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,TPRN->chr9:140086069-140098645:-,taperin	RH18_SOFT_TISSUE	1	1	0.0382	TRUE	0	4	0	4	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	QKI--CCNT1	2	8	QKI	2336	chr6:163836367:+	CCNT1	34635	chr12:49094856:-	ONLY_REF_SPLICE	YES	92	525	0.1	0.02	0.0191	0.0765	QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,CCNT1->Oncogene{Bushman},chr12:49082247-49110681:-,cyclin_T1	RH18_SOFT_TISSUE	0.02	0.1	0.0956	TRUE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	RP11-640M9.1--SEC22B	4	0	RP11-640M9.1	3158	chr1:144519813:-	SEC22B	26864	chr1:145109524:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0382	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Nerve=[count:6=pct:3.5],Adipose_Tissue=[count:4=pct:1.3],Esophagus=[count:3=pct:0.7],Brain=[count:2=pct:0.3],Breast=[count:2=pct:1.8],Uterus=[count:1=pct:2.3],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1]},RP11-640M9.1->chr1:144456138-144521970:-,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	RH18_SOFT_TISSUE	1	1	0.0382	TRUE	20	16	6	14	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	EEF1DP3--FRY	1	11	EEF1DP3	3331	chr13:32520318:+	FRY	12212	chr13:32612567:+	ONLY_REF_SPLICE	NO	2	2	0.86	0.86	0.0096	0.1052	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	RH18_SOFT_TISSUE	0.86	0.86	0.1148	FALSE	1	3	0	6	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	TSEN15--CACNA1E	3	3	TSEN15	2724	chr1:184023997:+	CACNA1E	13176	chr1:181452880:+	ONLY_REF_SPLICE	YES	84	0	0.07	1	0.0287	0.0287	TSEN15->chr1:184020811-184043346:+,tRNA_splicing_endonuclease_subunit_15,CACNA1E->calcium_voltage-gated_channel_subunit_alpha1_E,chr1:181382238-181777219:+	RH18_SOFT_TISSUE	0.07	1	0.0574	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	CTB-113P19.1--FTL	3	2	CTB-113P19.1	4720	chr5:151066469:+	FTL	9949	chr19:49468566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0.0191	CTB-113P19.1->chr5:151056506-151104343:+,FTL->chr19:49468558-49470135:+,ferritin,_light_polypeptide	RH18_SOFT_TISSUE	1	1	0.0478	TRUE	0	2	0	13	2	TRUE	ACH-000689
RH18_SOFT_TISSUE	NRIP1--AF127936.7	1	10	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	14	0	0.44	1	0.0096	0.0956	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RH18_SOFT_TISSUE	0.44	1	0.1052	FALSE	125	705	46	456	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	APP--MT-ND2	3	1	APP	11640	chr21:27394209:-	MT-ND2	33018	chrM:5312:+	INCL_NON_REF_SPLICE	YES	3172	4730	0	0	0.0287	0.0096	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	RH18_SOFT_TISSUE	0	0	0.0383	FALSE	0	1	0	51	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.8	0.8	0.0287	0.0096	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RH18_SOFT_TISSUE	0.8	0.8	0.0383	FALSE	467	2173	244	435	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	ARHGDIA--MT-CO3	3	0	ARHGDIA	3695	chr17:79826588:-	MT-CO3	7748	chrM:9268:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	ARHGDIA->Rho_GDP_dissociation_inhibitor_alpha,chr17:79825597-79829282:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	RH18_SOFT_TISSUE	1	1	0.0287	FALSE	0	0	0	6	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	CCNT1--RP11-320P7.2	1	8	CCNT1	6909	chr12:49091921:-	RP11-320P7.2	19488	chr12:70593513:+	ONLY_REF_SPLICE	YES	455	1	0.02	0.9	0.0096	0.0765	CCNT1->Oncogene{Bushman},chr12:49082247-49110681:-,cyclin_T1,RP11-320P7.2->chr12:70574118-70595784:+	RH18_SOFT_TISSUE	0.02	0.9	0.0861	TRUE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	DCTN2--SLC35E3	3	0	DCTN2	8939	chr12:57928839:-	SLC35E3	27626	chr12:69187068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	DCTN2->chr12:57923885-57941114:-,dynactin_subunit_2,SLC35E3->chr12:69139886-69187508:+,solute_carrier_family_35_member_E3	RH18_SOFT_TISSUE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	FRS2--MARS	3	0	FRS2	1182	chr12:69864310:+	MARS	30727	chr12:57892203:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	FRS2->ArcherDX_panel,FoundationOne_panel,chr12:69864129-69973562:+,fibroblast_growth_factor_receptor_substrate_2,MARS->Oncogene{Bushman},chr12:57869228-57911352:+,methionyl-tRNA_synthetase	RH18_SOFT_TISSUE	1	1	0.0287	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH18_SOFT_TISSUE	1	1	0.0287	FALSE	499	1288	110	792	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH18_SOFT_TISSUE	1	1	0.0287	FALSE	499	1288	110	792	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH18_SOFT_TISSUE	1	1	0.0287	FALSE	499	1288	110	792	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RH18_SOFT_TISSUE	1	1	0.0287	FALSE	499	1288	110	792	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-TA--MT-TN	3	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RH18_SOFT_TISSUE	1	1	0.0287	FALSE	369	2501	205	193	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MT-TA--MT-TN	3	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RH18_SOFT_TISSUE	1	1	0.0287	FALSE	369	2501	205	193	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	PCAT1--RP11-382A18.2	3	0	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0287	0	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	RH18_SOFT_TISSUE	1	1	0.0287	TRUE	4	84	1	46	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	RP11-120D5.1--MID1	3	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0287	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RH18_SOFT_TISSUE	1	1	0.0287	FALSE	16	356	14	466	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	COL1A2--COL16A1	2	3	COL1A2	28854	chr7:94056373:+	COL16A1	44355	chr1:32159771:-	ONLY_REF_SPLICE	YES	7610	273	0	0.02	0.0191	0.0287	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1	RH18_SOFT_TISSUE	0	0.02	0.0478	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	1	7	VDR	2272	chr12:48298738:-	CACNA2D4	43170	chr12:1920889:-	ONLY_REF_SPLICE	YES	1	37	0.89	0.18	0.0096	0.0669	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.18	0.89	0.0765	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	ARFRP1--NDUFV1	2	1	ARFRP1	2669	chr20:62337709:-	NDUFV1	14927	chr11:67375867:+	ONLY_REF_SPLICE	YES	68	187	0.04	0.02	0.0191	0.0096	ARFRP1->ADP_ribosylation_factor_related_protein_1,ArcherDX_panel,FoundationOne_panel,chr20:62329996-62339377:-,NDUFV1->NADH:ubiquinone_oxidoreductase_core_subunit_V1,chr11:67374323-67380006:+	RH18_SOFT_TISSUE	0.02	0.04	0.0287	TRUE	0	1	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	BOP1--EEF1D	2	1	BOP1	4671	chr8:145500212:-	EEF1D	29535	chr8:144663498:-	ONLY_REF_SPLICE	YES	97	978	0.03	0	0.0191	0.0096	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	RH18_SOFT_TISSUE	0	0.03	0.0287	FALSE	0	0	0	4	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	COL5A1--KCTD5	2	1	COL5A1	28740	chr9:137664680:+	KCTD5	76800	chr16:2749822:+	ONLY_REF_SPLICE	YES	606	164	0	0.02	0.0191	0.0096	COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1,KCTD5->chr16:2732476-2759031:+,potassium_channel_tetramerization_domain_containing_5	RH18_SOFT_TISSUE	0	0.02	0.0287	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	EDF1--COL5A1	2	1	EDF1	2690	chr9:139757740:-	COL5A1	45683	chr9:137693800:+	ONLY_REF_SPLICE	YES	309	689	0.01	0	0.0191	0.0096	{Klijn_CCL:Lung=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1	RH18_SOFT_TISSUE	0	0.01	0.0287	FALSE	0	0	0	2	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	EEF1DP3--FRY	2	1	EEF1DP3	1099	chr13:32421076:+	FRY	14703	chr13:32652971:+	ONLY_REF_SPLICE	YES	1	2	0.75	0.6	0.0191	0.0096	NEIGHBORS[77828],EEF1DP3->chr13:32420978-32527609:+,eukaryotic_translation_elongation_factor_1_delta_pseudogene_3,FRY->FRY_microtubule_binding_protein,chr13:32605437-32870794:+	RH18_SOFT_TISSUE	0.6	0.75	0.0287	FALSE	18	26	2	21	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	GALNS--TUBB3	2	1	GALNS	1213	chr16:88923166:-	TUBB3	31541	chr16:89998979:+	ONLY_REF_SPLICE	YES	99	289	0.03	0.01	0.0191	0.0096	GALNS->Oncogene{Bushman},chr16:88880142-88923378:-,galactosamine_(N-acetyl)-6-sulfatase,TUBB3->chr16:89985573-90002500:+,chr16:89987800-90005169:+,tubulin_beta_3_class_III	RH18_SOFT_TISSUE	0.01	0.03	0.0287	FALSE	0	1	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	DYRK1A--HLCS	2	0	DYRK1A	7496	chr21:38792686:+	HLCS	43170	chr21:38139586:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	DYRK1A->Oncogene{Bushman},chr21:38738092-38889753:+,dual_specificity_tyrosine_phosphorylation_regulated_kinase_1A,HLCS->chr21:38123189-38362536:-,holocarboxylase_synthetase	RH18_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	EDF1--EXD3	2	0	EDF1	2690	chr9:139757740:-	EXD3	8013	chr9:140289856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,EXD3->chr9:140201348-140317714:-,exonuclease_3'-5'_domain_containing_3	RH18_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	INTS1--GLI4	2	0	INTS1	16610	chr7:1526261:-	GLI4	36806	chr8:144351530:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	INTS1->chr7:1509913-1545489:-,integrator_complex_subunit_1,GLI4->GLI_family_zinc_finger_4,Oncogene{Bushman},chr8:144349603-144359101:+	RH18_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	PLD3--CTC-490E21.13	2	0	PLD3	1313	chr19:40854675:+	CTC-490E21.13	17426	chr19:41416592:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	PLD3->chr19:40854363-40886346:+,phospholipase_D_family_member_3,CTC-490E21.13->chr19:41414377-41416754:-	RH18_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	RP11-120D5.1--MID1	2	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RH18_SOFT_TISSUE	1	1	0.0191	FALSE	0	48	1	163	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	STC2--SP1	2	0	STC2	2461	chr5:172755046:-	SP1	18728	chr12:53800369:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	STC2->chr5:172741716-172756506:-,stanniocalcin_2,SP1->Sp1_transcription_factor,chr12:53773960-53810230:+	RH18_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	TPCN2--CCND1	2	0	TPCN2	5754	chr11:68830458:+	CCND1	30243	chr11:69465886:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0191	0	TPCN2->chr11:68816365-68858072:+,two_pore_segment_channel_2,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	RH18_SOFT_TISSUE	1	1	0.0191	TRUE	0	0	0	1	0	TRUE	ACH-000689
RH18_SOFT_TISSUE	VDR--CACNA2D4	1	3	VDR	2272	chr12:48298738:-	CACNA2D4	46967	chr12:1910284:-	ONLY_REF_SPLICE	YES	1	180	0.8	0.02	0.0096	0.0287	VDR->chr12:48235320-48336831:-,vitamin_D_(1,25-_dihydroxyvitamin_D3)_receptor,CACNA2D4->calcium_voltage-gated_channel_auxiliary_subunit_alpha2delta_4,chr12:1901123-2028002:-	RH18_SOFT_TISSUE	0.02	0.8	0.0383	TRUE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	ARFRP1--SMARCA4	1	2	ARFRP1	2669	chr20:62337709:-	SMARCA4	45890	chr19:11143966:+	ONLY_REF_SPLICE	NO	68	182	0.04	0.02	0.0096	0.0191	ARFRP1->ADP_ribosylation_factor_related_protein_1,ArcherDX_panel,FoundationOne_panel,chr20:62329996-62339377:-,SMARCA4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin,_subfamily_a,_member_4,chr19:11071598-11176071:+	RH18_SOFT_TISSUE	0.02	0.04	0.0287	TRUE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	C7orf50--MAD1L1	1	2	C7orf50	12142	chr7:1040106:-	MAD1L1	55558	chr7:1855864:-	ONLY_REF_SPLICE	YES	262	60	0.01	0.05	0.0096	0.0191	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	RH18_SOFT_TISSUE	0.01	0.05	0.0287	FALSE	0	2	0	4	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	CCT2--MYRFL	1	2	CCT2	7973	chr12:69987393:+	MYRFL	37272	chr12:70352029:+	ONLY_REF_SPLICE	YES	5841	101	0	0.03	0.0096	0.0191	CCT2->chaperonin_containing_TCP1_subunit_2,chr12:69979114-69995350:+,MYRFL->chr12:70219084-70352877:+,myelin_regulatory_factor-like	RH18_SOFT_TISSUE	0	0.03	0.0287	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	COL1A2--COL16A1	1	2	COL1A2	15670	chr7:94043055:+	COL16A1	45371	chr1:32158755:-	ONLY_REF_SPLICE	YES	7107	350	0	0.01	0.0096	0.0191	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1	RH18_SOFT_TISSUE	0	0.01	0.0287	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	COL8A1--CMSS1	1	2	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	YES	322	59	0.01	0.05	0.0096	0.0191	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	RH18_SOFT_TISSUE	0.01	0.05	0.0287	FALSE	38	10	2	29	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	LMCD1--GRM7	1	2	LMCD1	1274	chr3:8543666:+	GRM7	42032	chr3:7732897:+	ONLY_REF_SPLICE	YES	239	0	0.01	1	0.0096	0.0191	LMCD1->LIM_and_cysteine_rich_domains_1,chr3:8543393-8609805:+,GRM7->chr3:6811688-7783215:+,glutamate_metabotropic_receptor_7	RH18_SOFT_TISSUE	0.01	1	0.0287	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	AC002066.1--TES	1	1	AC002066.1	1112	chr7:116139408:-	TES	13999	chr7:115874588:+	ONLY_REF_SPLICE	YES	0	254	1	0.01	0.0096	0.0096	NEIGHBORS_OVERLAP:-:+:[20523],AC002066.1->chr7:115878314-116139519:-,TES->chr7:115850547-115898837:+,testin_LIM_domain_protein	RH18_SOFT_TISSUE	0.01	1	0.0192	FALSE	0	2	0	3	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	ADAM10--ANXA2	1	1	ADAM10	18529	chr15:58919899:-	ANXA2	47839	chr15:60656722:-	ONLY_REF_SPLICE	YES	154	2903	0.01	0	0.0096	0.0096	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},ADAM10->ADAM_metallopeptidase_domain_10,chr15:58887403-59042177:-,ANXA2->annexin_A2,chr15:60639333-60695082:-	RH18_SOFT_TISSUE	0	0.01	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	ARFRP1--CCND1	1	1	ARFRP1	2669	chr20:62337709:-	CCND1	17003	chr11:69462762:+	ONLY_REF_SPLICE	YES	68	640	0.03	0	0.0096	0.0096	ARFRP1->ADP_ribosylation_factor_related_protein_1,ArcherDX_panel,FoundationOne_panel,chr20:62329996-62339377:-,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	RH18_SOFT_TISSUE	0	0.03	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	C7orf50--MAD1L1	1	1	C7orf50	3078	chr7:1166893:-	MAD1L1	44619	chr7:2041756:-	ONLY_REF_SPLICE	YES	136	66	0.01	0.03	0.0096	0.0096	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	RH18_SOFT_TISSUE	0.01	0.03	0.0192	FALSE	0	0	0	2	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	CANT1--UNC13D	1	1	CANT1	8869	chr17:76991100:-	UNC13D	15420	chr17:73840452:-	ONLY_REF_SPLICE	YES	177	2	0.01	0.5	0.0096	0.0096	CANT1->Oncogene{Bushman},calcium_activated_nucleotidase_1,chr17:76987799-77005949:-,UNC13D->chr17:73823306-73840798:-,unc-13_homolog_D	RH18_SOFT_TISSUE	0.01	0.5	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	COL1A2--COL16A1	1	1	COL1A2	26236	chr7:94053755:+	COL16A1	71320	chr1:32126239:-	ONLY_REF_SPLICE	NO	9370	288	0	0.01	0.0096	0.0096	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},HGNC_GENEFAM,PROTCLUST,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1	RH18_SOFT_TISSUE	0	0.01	0.0192	FALSE	0	1	0	1	1	FALSE	ACH-000689
RH18_SOFT_TISSUE	COL5A1--KCTD5	1	1	COL5A1	28740	chr9:137664680:+	KCTD5	73205	chr16:2745936:+	ONLY_REF_SPLICE	YES	606	74	0	0.03	0.0096	0.0096	COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1,KCTD5->chr16:2732476-2759031:+,potassium_channel_tetramerization_domain_containing_5	RH18_SOFT_TISSUE	0	0.03	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	EDF1--COL5A1	1	1	EDF1	3072	chr9:139757358:-	COL5A1	69132	chr9:137726817:+	ONLY_REF_SPLICE	YES	182	691	0.01	0	0.0096	0.0096	{Klijn_CCL:Lung=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1	RH18_SOFT_TISSUE	0	0.01	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	EDF1--COL5A1	1	1	EDF1	2690	chr9:139757740:-	COL5A1	69132	chr9:137726817:+	ONLY_REF_SPLICE	NO	309	691	0.01	0	0.0096	0.0096	{Klijn_CCL:Lung=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,COL5A1->chr9:137533620-137736686:+,collagen_type_V_alpha_1	RH18_SOFT_TISSUE	0	0.01	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	FLJ27365--CCND1	1	1	FLJ27365	5193	chr22:46494438:+	CCND1	21396	chr11:69465886:+	ONLY_REF_SPLICE	YES	10	653	0.17	0	0.0096	0.0096	FLJ27365->chr22:46449749-46509808:+,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	RH18_SOFT_TISSUE	0	0.17	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	GAS6--CUL4A	1	1	GAS6	1499	chr13:114566548:-	CUL4A	40788	chr13:113917801:+	ONLY_REF_SPLICE	YES	37	136	0.05	0.01	0.0096	0.0096	GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6,CUL4A->chr13:113862552-113919399:+,cullin_4A	RH18_SOFT_TISSUE	0.01	0.05	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	LINC01013--STX7	1	1	LINC01013	2781	chr6:132455623:+	STX7	16505	chr6:132824727:-	ONLY_REF_SPLICE	NO	61	24	0.03	0.08	0.0096	0.0096	LINC01013->chr6:132453055-132490514:+,long_intergenic_non-protein_coding_RNA_1013,STX7->chr6:132767006-132834337:-,syntaxin_7	RH18_SOFT_TISSUE	0.03	0.08	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	MAD1L1--SPPL2B	1	1	MAD1L1	35008	chr7:1937836:-	SPPL2B	46769	chr19:2337442:+	ONLY_REF_SPLICE	NO	57	55	0.03	0.04	0.0096	0.0096	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,SPPL2B->Oncogene{Bushman},chr19:2328614-2355099:+,signal_peptide_peptidase_like_2B	RH18_SOFT_TISSUE	0.03	0.04	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	NME2--SPAG9	1	1	NME2	7432	chr17:49245704:+	SPAG9	15437	chr17:49133843:-	ONLY_REF_SPLICE	NO	1226	81	0	0.02	0.0096	0.0096	LOCAL_INVERSION:+:-:[32725],NME2->NME/NM23_nucleoside_diphosphate_kinase_2,chr17:49230951-49249105:+,SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9	RH18_SOFT_TISSUE	0	0.02	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	PGP--MLST8	1	1	PGP	2227	chr16:2263582:-	MLST8	9599	chr16:2257036:+	ONLY_REF_SPLICE	YES	16	82	0.11	0.02	0.0096	0.0096	LOCAL_INVERSION:-:+:[2581],PGP->chr16:2261998-2264808:-,phosphoglycolate_phosphatase,MLST8->MTOR_associated_protein,_LST8_homolog,chr16:2254249-2259417:+	RH18_SOFT_TISSUE	0.02	0.11	0.0192	TRUE	0	0	0	1	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	PLD1--FNDC3B	1	1	PLD1	1552	chr3:171528189:-	FNDC3B	47799	chr3:171830242:+	ONLY_REF_SPLICE	YES	6	107	0.25	0.02	0.0096	0.0096	GTEx_v2:{count=2;pct=0.02%;dist=Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},PLD1->Oncogene{Bushman},chr3:171318195-171528740:-,phospholipase_D1,FNDC3B->chr3:171757418-172119455:+,fibronectin_type_III_domain_containing_3B	RH18_SOFT_TISSUE	0.02	0.25	0.0192	TRUE	0	0	0	2	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0096	0.0096	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RH18_SOFT_TISSUE	0.67	1	0.0192	FALSE	275	511	55	178	0	FALSE	ACH-000689
RH18_SOFT_TISSUE	TEAD1--PARVA	1	1	TEAD1	2140	chr11:12697108:+	PARVA	32787	chr11:12495292:+	ONLY_REF_SPLICE	YES	50	260	0.04	0.01	0.0096	0.0096	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	RH18_SOFT_TISSUE	0.01	0.04	0.0192	FALSE	0	2	0	5	2	FALSE	ACH-000689
RH18_SOFT_TISSUE	TWSG1--NDUFV2	1	1	TWSG1	2314	chr18:9337350:+	NDUFV2	17460	chr18:9117836:+	ONLY_REF_SPLICE	YES	252	115	0.01	0.02	0.0096	0.0096	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},TWSG1->chr18:9334765-9402418:+,twisted_gastrulation_BMP_signaling_modulator_1,NDUFV2->NADH:ubiquinone_oxidoreductase_core_subunit_V2,chr18:9102628-9134343:+	RH18_SOFT_TISSUE	0.01	0.02	0.0192	FALSE	0	0	0	1	0	FALSE	ACH-000689
WM88_SKIN	TIMM23B--LINC00843	16	5	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2808	0.0878	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	WM88_SKIN	1	1	0.3686	TRUE	508	994	45	981	0	FALSE	ACH-000899
WM88_SKIN	CHEK2--PITPNB	12	0	CHEK2	1654	chr22:29137757:-	PITPNB	35936	chr22:28269803:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2106	0	CHEK2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},checkpoint_kinase_2,chr22:29083731-29138410:-,PITPNB->chr22:28247657-28316122:-,phosphatidylinositol_transfer_protein_beta	WM88_SKIN	1	1	0.2106	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	GMIP--ATP13A1	9	0	GMIP	7121	chr19:19747516:-	ATP13A1	27194	chr19:19760749:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.158	0	LOCAL_REARRANGEMENT:-:[1531],GMIP->GEM_interacting_protein,chr19:19740285-19754476:-,ATP13A1->ATPase_13A1,chr19:19756007-19774502:-	WM88_SKIN	1	1	0.158	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	MT-ND6--MT-TE	8	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1404	0.0176	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	WM88_SKIN	1	1	0.158	FALSE	499	1288	110	792	0	FALSE	ACH-000899
WM88_SKIN	CHTF18--ERRFI1	8	0	CHTF18	3224	chr16:840269:+	ERRFI1	15220	chr1:8086341:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1404	0	CHTF18->chr16:838046-850737:+,chromosome_transmission_fidelity_factor_18,ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-	WM88_SKIN	1	1	0.1404	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	TIMM23--RP11-464F9.1	7	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	44	0	0.15	1	0.1229	0.0176	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	WM88_SKIN	0.15	1	0.1405	TRUE	519	3926	326	965	0	FALSE	ACH-000899
WM88_SKIN	EIF1--GNAS	6	0	EIF1	1112	chr17:39845248:+	GNAS	21385	chr20:57466775:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1053	0	GTEx&tcga_normals:1/3694=0.03%,EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	WM88_SKIN	1	1	0.1053	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	NRIP1--AF127936.7	5	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0878	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	WM88_SKIN	1	1	0.0878	FALSE	125	705	46	456	0	FALSE	ACH-000899
WM88_SKIN	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0702	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	WM88_SKIN	1	1	0.0702	FALSE	292	1546	117	613	0	FALSE	ACH-000899
WM88_SKIN	AMBRA1--MT-CO1	3	0	AMBRA1	9842	chr11:46563795:-	MT-CO1	31932	chrM:6489:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	AMBRA1->autophagy_and_beclin_1_regulator_1,chr11:46417964-46615675:-,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	WM88_SKIN	1	1	0.0527	FALSE	0	0	0	1	0	FALSE	ACH-000899
WM88_SKIN	APOD--RUNX1	3	0	APOD	8816	chr3:195295956:-	RUNX1	51319	chr21:36161644:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	APOD->apolipoprotein_D,chr3:195295573-195311076:-,RUNX1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr21:36160098-37376965:-,runt_related_transcription_factor_1	WM88_SKIN	1	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	CYHR1--LRRC41	3	0	CYHR1	11610	chr8:145677097:-	LRRC41	27476	chr1:46746181:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	CYHR1->chr8:145674965-145691060:-,cysteine/histidine-rich_1,LRRC41->chr1:46726868-46769280:-,leucine_rich_repeat_containing_41	WM88_SKIN	1	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	NUDCD2--MT-ATP6	3	0	NUDCD2	7130	chr5:162878755:-	MT-ATP6	15386	chrM:8559:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	NUDCD2->NudC_domain_containing_2,chr5:162873532-162887146:-,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	WM88_SKIN	1	1	0.0527	FALSE	0	0	0	1	0	FALSE	ACH-000899
WM88_SKIN	PRMT2--EEF1D	3	0	PRMT2	2824	chr21:48056902:+	EEF1D	32331	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0527	0	PRMT2->chr21:48055079-48085036:+,protein_arginine_methyltransferase_2,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	WM88_SKIN	1	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	THAP8--PBX4	3	0	THAP8	1414	chr19:36545251:-	PBX4	11692	chr19:19681642:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0527	0	THAP8->THAP_domain_containing_8,chr19:36525887-36545664:-,PBX4->chr19:19672522-19729725:-,pre-B-cell_leukemia_homeobox_4	WM88_SKIN	1	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	TNFRSF21--MT-ATP8	3	0	TNFRSF21	1235	chr6:47277407:-	MT-ATP8	12702	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0527	0	TNFRSF21->chr6:47199268-47277641:-,tumor_necrosis_factor_receptor_superfamily_member_21,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	WM88_SKIN	1	1	0.0527	FALSE	0	0	0	1	0	FALSE	ACH-000899
WM88_SKIN	PBX4--ATP13A1	2	1	PBX4	6026	chr19:19680258:-	ATP13A1	25119	chr19:19760749:-	ONLY_REF_SPLICE	YES	0	8	1	0.27	0.0351	0.0176	LOCAL_REARRANGEMENT:-:[26282],PBX4->chr19:19672522-19729725:-,pre-B-cell_leukemia_homeobox_4,ATP13A1->ATPase_13A1,chr19:19756007-19774502:-	WM88_SKIN	0.27	1	0.0527	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	ATRX--ZFAND3	2	0	ATRX	1235	chrX:77041468:-	ZFAND3	50909	chr6:38029369:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,ZFAND3->chr6:37787275-38122400:+,zinc_finger_AN1-type_containing_3	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	CHSY1--ALDH1A3	2	0	CHSY1	4362	chr15:101775287:-	ALDH1A3	19587	chr15:101425472:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	CHSY1->chondroitin_sulfate_synthase_1,chr15:101715928-101792137:-,ALDH1A3->aldehyde_dehydrogenase_1_family_member_A3,chr15:101417919-101456831:+	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	COL19A1--SON	2	0	COL19A1	15565	chr6:70672762:+	SON	69409	chr21:34931536:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	COL19A1->Oncogene{Bushman},chr6:70576463-70919679:+,collagen_type_XIX_alpha_1,SON->SON_DNA_binding_protein,chr21:34914924-34949812:+	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	CTD-3138B18.5--SUCLG2	2	0	CTD-3138B18.5	1286	chr19:58789889:-	SUCLG2	9960	chr3:67579610:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	CTD-3138B18.5->chr19:58768639-58790174:-,SUCLG2->chr3:67410884-67705038:-,succinate-CoA_ligase_GDP-forming_beta_subunit	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	DLEU1--DDX21	2	0	DLEU1	2024	chr13:50657330:+	DDX21	65683	chr10:70741293:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	DLEU1->chr13:50656307-51297372:+,deleted_in_lymphocytic_leukemia_1_(non-protein_coding),DDX21->DEAD-box_helicase_21,chr10:70715884-70744829:+	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	GALNT18--RP11-141M1.3	2	0	GALNT18	9780	chr11:11394062:-	RP11-141M1.3	23245	chr13:34098509:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	GALNT18->chr11:11292423-11643552:-,polypeptide_N-acetylgalactosaminyltransferase_18,RP11-141M1.3->chr13:33929343-34250905:-	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	IARS--QSER1	2	0	IARS	1146	chr9:95055893:-	QSER1	40482	chr11:32948703:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase,QSER1->chr11:32914724-33014862:+,glutamine_and_serine_rich_1	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	METTL8--TLK1	2	0	METTL8	5056	chr2:172248553:-	TLK1	31238	chr2:171974367:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	NEIGHBORS[86095],METTL8->chr2:172173919-172291312:-,methyltransferase_like_8,TLK1->chr2:171847333-172087824:-,tousled_like_kinase_1	WM88_SKIN	1	1	0.0351	FALSE	0	0	0	1	0	FALSE	ACH-000899
WM88_SKIN	PHF21A--BSCL2	2	0	PHF21A	1500	chr11:46142486:-	BSCL2	37897	chr11:62474796:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	PHF21A->PHD_finger_protein_21A,chr11:45950871-46142985:-,BSCL2->Berardinelli-Seip_congenital_lipodystrophy_2_(seipin),chr11:62457747-62477317:-	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	RCC1--ANO6	2	0	RCC1	2175	chr1:28834672:+	ANO6	39943	chr12:45796855:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ANO6->anoctamin_6,chr12:45609770-45834187:+	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	RRAGB--NRF1	2	0	RRAGB	9851	chrX:55779947:+	NRF1	17655	chr7:129269919:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	RRAGB->Ras_related_GTP_binding_B,chrX:55744172-55785207:+,NRF1->Oncogene{Bushman},chr7:129251555-129396922:+,nuclear_respiratory_factor_1	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
WM88_SKIN	ZNF589--NGDN	2	0	ZNF589	5670	chr3:48302429:+	NGDN	20418	chr14:23945448:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	ZNF589->chr3:48282590-48340743:+,zinc_finger_protein_589,NGDN->chr14:23938897-23979071:+,neuroguidin	WM88_SKIN	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000899
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	221	80	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	99	122	0.75	0.71	1.9153	0.6933	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.75	2.6086	TRUE	181	1564	124	196	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TP53--SOX5	187	26	TP53	1162	chr17:7590695:-	SOX5	20166	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.6206	0.2253	TP53->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr17:7565097-7590856:-,tumor_protein_p53,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.8459	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	157	31	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3606	0.2687	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.6293	TRUE	508	994	45	981	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	93	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	267	4	0.26	0.96	0.806	0.0173	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.96	0.8233	TRUE	519	3926	326	965	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC027612.6--SLC9B1P2	67	1	AC027612.6	1064	chr2:91847935:-	SLC9B1P2	15308	chr2:92118478:-	ONLY_REF_SPLICE	YES	3	2	0.96	0.97	0.5807	0.0087	AC027612.6->chr2:91805186-91847998:-,SLC9B1P2->chr2:92071102-92119740:-,solute_carrier_family_9_member_B1_pseudogene_2	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	0.97	0.5894	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	65	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5633	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5633	FALSE	369	2501	205	193	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC027612.6--SLC9B1P2	52	1	AC027612.6	1064	chr2:91847935:-	SLC9B1P2	16447	chr2:92102236:-	INCL_NON_REF_SPLICE	YES	3	11	0.95	0.83	0.4507	0.0087	AC027612.6->chr2:91805186-91847998:-,SLC9B1P2->chr2:92071102-92119740:-,solute_carrier_family_9_member_B1_pseudogene_2	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	0.95	0.4594	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	39	6	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.338	0.052	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.39	FALSE	46	201	11	112	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-14N7.2--SLC9B1P1	38	0	RP11-14N7.2	1064	chr1:148928385:+	SLC9B1P1	7221	chrY:13524707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3293	0	RP11-14N7.2->chr1:148928322-148951595:+,SLC9B1P1->chrY:13496241-13524717:-,solute_carrier_family_9_member_B1_pseudogene_1	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3293	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNGTT--SQLE	33	3	RNGTT	14816	chr6:89388072:-	SQLE	30990	chr8:126023779:+	ONLY_REF_SPLICE	YES	17	241	0.68	0.13	0.286	0.026	RNGTT->RNA_guanylyltransferase_and_5'-phosphatase,chr6:89319985-89673348:-,SQLE->chr8:126010739-126034525:+,squalene_epoxidase	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	0.68	0.312	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	24	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.208	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.208	TRUE	0	0	0	518	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	19	9	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1647	0.078	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2427	TRUE	13	49	2	38	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2C--MED6	16	10	KMT2C	3611	chr7:152027686:-	MED6	78514	chr14:71060095:-	ONLY_REF_SPLICE	YES	27	103	0.49	0.2	0.1387	0.0867	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,MED6->chr14:71047974-71067384:-,mediator_complex_subunit_6	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.49	0.2254	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	5	42	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0433	0.364	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4073	FALSE	369	2501	205	193	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	42	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	NO	6	0	0.88	1	0.0347	0.364	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.3987	FALSE	189	492	56	216	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	13	2	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	72	1594	0.17	0.01	0.1127	0.0173	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.17	0.13	TRUE	0	0	0	434	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	5	33	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0.286	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3293	FALSE	369	2501	205	193	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	40	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	10	4	0.81	0.91	0.026	0.3467	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.91	0.3727	FALSE	189	492	56	216	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	38	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	0	3	1	0.93	0.026	0.3293	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.3553	FALSE	189	492	56	216	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	10	7	RP11-155G15.2	3309	chr5:96772337:+	RP11-1E3.1	9053	chr5:97004255:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0867	0.0607	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1474	FALSE	0	1	0	8	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-TL1	3	29	MT-ND1	1155	chrM:3461:+	MT-TL1	4983	chrM:3256:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0.2513	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2773	FALSE	210	95	5	49	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV1-5	9	4	AC096579.7	3828	chr2:89157090:-	IGKV1-5	8979	chr2:89246921:-	INCL_NON_REF_SPLICE	YES	4357	105	0	0.11	0.078	0.0347	LOCAL_REARRANGEMENT:-:[81166],AC096579.7->chr2:89130700-89165653:-,IGKV1-5->chr2:89246819-89247475:-,immunoglobulin_kappa_variable_1-5	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.11	0.1127	TRUE	0	0	0	1	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TR--MT-ND3	3	27	MT-TR	1059	chrM:10463:+	MT-ND3	4289	chrM:10282:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0.234	LOCAL_REARRANGEMENT:+:[1],MT-TR->chrM:10405-10469:+,mitochondrially_encoded_tRNA_arginine,MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.26	FALSE	0	2	0	3	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	9	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.078	0.0087	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0867	FALSE	416	2512	207	587	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2C--MED6	8	4	KMT2C	3611	chr7:152027686:-	MED6	80511	chr14:71058098:-	ONLY_REF_SPLICE	YES	27	137	0.31	0.08	0.0693	0.0347	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,MED6->chr14:71047974-71067384:-,mediator_complex_subunit_6	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.31	0.104	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	5	16	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0433	0.1387	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.182	FALSE	369	2501	205	193	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	7	0	0.59	1	0.0607	0.026	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	1	0.0867	FALSE	189	492	56	216	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANAPC1--MIR4435-1HG	7	1	ANAPC1	13449	chr2:112614191:-	MIR4435-1HG	72132	chr2:112005818:-	ONLY_REF_SPLICE	YES	123	23	0.06	0.26	0.0607	0.0087	ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-,MIR4435-1HG->chr2:111953927-112252677:-	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.26	0.0694	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV1-5	7	0	AC096579.7	3767	chr2:89157151:-	IGKV1-5	8987	chr2:89246913:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	LOCAL_REARRANGEMENT:-:[81166],AC096579.7->chr2:89130700-89165653:-,IGKV1-5->chr2:89246819-89247475:-,immunoglobulin_kappa_variable_1-5	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0607	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV1-5	7	0	AC096579.7	3776	chr2:89157142:-	IGKV1-5	8994	chr2:89246906:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	LOCAL_REARRANGEMENT:-:[81166],AC096579.7->chr2:89130700-89165653:-,IGKV1-5->chr2:89246819-89247475:-,immunoglobulin_kappa_variable_1-5	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0607	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	12	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0.104	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1387	FALSE	369	2501	205	193	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	7	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0607	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0607	FALSE	369	2501	205	193	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	21	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	99	85	0.18	0.21	0.0087	0.182	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.21	0.1907	TRUE	20	16	0	28	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	6	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	72	1325	0.09	0.01	0.052	0.0087	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.09	0.0607	FALSE	0	0	0	434	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-TL1	3	12	MT-ND1	1341	chrM:3647:+	MT-TL1	5012	chrM:3285:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.026	0.104	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.13	FALSE	210	95	5	49	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV1-5	4	7	AC096579.7	3975	chr2:89156943:-	IGKV1-5	8955	chr2:89246945:-	INCL_NON_REF_SPLICE	YES	8013	1163	0	0.01	0.0347	0.0607	LOCAL_REARRANGEMENT:-:[81166],AC096579.7->chr2:89130700-89165653:-,IGKV1-5->chr2:89246819-89247475:-,immunoglobulin_kappa_variable_1-5	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0954	FALSE	0	0	0	1	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REL--ANKRD36BP2	5	3	REL	10110	chr2:61149134:+	ANKRD36BP2	29169	chr2:89082251:+	INCL_NON_REF_SPLICE	YES	871	340	0.01	0.02	0.0433	0.026	REL->Oncogene{Bushman},REL_proto-oncogene,_NF-kB_subunit,chr2:61108656-61158745:+,ANKRD36BP2->ankyrin_repeat_domain_36B_pseudogene_2,chr2:89065324-89106126:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0693	FALSE	0	0	0	1	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SCAPER--KMT2C	5	3	SCAPER	5656	chr15:77150150:-	KMT2C	112269	chr7:151843820:-	ONLY_REF_SPLICE	YES	13	28	0.38	0.22	0.0433	0.026	SCAPER->S-phase_cyclin_A-associated_protein_in_the_ER,chr15:76640526-77197785:-,KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.38	0.0693	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	4	6	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	7991	chr5:96856933:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0.052	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0867	FALSE	0	1	1	12	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2C--ADAM20	5	1	KMT2C	3611	chr7:152027686:-	ADAM20	76062	chr14:70991650:-	ONLY_REF_SPLICE	YES	27	0	0.18	1	0.0433	0.0087	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,ADAM20->ADAM_metallopeptidase_domain_20,chr14:70989075-71001732:-	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	1	0.052	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV1-5	4	4	AC096579.7	3837	chr2:89157081:-	IGKV1-5	8988	chr2:89246912:-	INCL_NON_REF_SPLICE	YES	4910	49	0	0.14	0.0347	0.0347	LOCAL_REARRANGEMENT:-:[81166],AC096579.7->chr2:89130700-89165653:-,IGKV1-5->chr2:89246819-89247475:-,immunoglobulin_kappa_variable_1-5	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.14	0.0694	FALSE	0	0	0	1	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	91	36	0.08	0.18	0.0347	0.0347	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.18	0.0694	TRUE	267	562	48	632	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	94	32	0.1	0.24	0.026	0.0607	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.24	0.0867	TRUE	267	562	48	632	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	7	MT-CO3	1105	chrM:9311:+	MT-ATP6	5428	chrM:9170:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0.0607	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0867	FALSE	189	492	56	216	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV1-5	3	6	AC096579.7	3838	chr2:89157080:-	IGKV1-5	8955	chr2:89246945:-	INCL_NON_REF_SPLICE	YES	4943	1163	0	0.01	0.026	0.052	LOCAL_REARRANGEMENT:-:[81166],AC096579.7->chr2:89130700-89165653:-,IGKV1-5->chr2:89246819-89247475:-,immunoglobulin_kappa_variable_1-5	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.078	FALSE	0	0	0	1	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	2	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	72	1456	0.08	0	0.0347	0.0173	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.052	FALSE	0	0	0	434	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	2	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	72	1459	0.08	0	0.0347	0.0173	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.08	0.052	FALSE	0	0	0	434	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HS2ST1--SEP15	4	0	HS2ST1	1513	chr1:87380843:+	SEP15	28222	chr1:87346408:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0347	TRUE	0	3	0	8	1	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0347	FALSE	189	492	56	216	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0347	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0347	FALSE	369	2501	205	193	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	4	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0347	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0347	TRUE	1	10	0	18	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	2	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	NO	72	1568	0.06	0	0.026	0.0173	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.06	0.0433	FALSE	0	0	0	434	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC027612.6--SLC9B1P2	3	1	AC027612.6	1064	chr2:91847935:-	SLC9B1P2	14165	chr2:92119739:-	INCL_NON_REF_SPLICE	YES	3	0	0.57	1	0.026	0.0087	AC027612.6->chr2:91805186-91847998:-,SLC9B1P2->chr2:92071102-92119740:-,solute_carrier_family_9_member_B1_pseudogene_2	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	0.0347	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	FALSE	189	492	56	216	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND1--MT-TL1	3	0	MT-ND1	1053	chrM:3359:+	MT-TL1	5016	chrM:3289:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	FALSE	210	95	5	49	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REL--ANKRD36BP2	3	0	REL	1330	chr2:61108985:+	ANKRD36BP2	36466	chr2:89100616:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	REL->Oncogene{Bushman},REL_proto-oncogene,_NF-kB_subunit,chr2:61108656-61158745:+,ANKRD36BP2->ankyrin_repeat_domain_36B_pseudogene_2,chr2:89065324-89106126:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ST14--APLP2	3	0	ST14	1499	chr11:130029955:+	APLP2	22856	chr11:129979324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	LOCAL_REARRANGEMENT:+:[14758],ST14->chr11:130029457-130080271:+,suppression_of_tumorigenicity_14,APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.026	TRUE	0	2	0	3	1	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2C--MED6	2	2	KMT2C	2469	chr7:152055672:-	MED6	78514	chr14:71060095:-	ONLY_REF_SPLICE	YES	67	103	0.06	0.04	0.0173	0.0173	KMT2C->ArcherDX_panel,FoundationOne_panel,chr7:151832010-152133090:-,lysine_methyltransferase_2C,MED6->chr14:71047974-71067384:-,mediator_complex_subunit_6	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.06	0.0346	TRUE	0	0	0	1	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0173	0.0173	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0346	FALSE	16	356	14	466	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--SRSF1	2	1	CPSF6	11046	chr12:69656342:+	SRSF1	22199	chr17:56082402:-	ONLY_REF_SPLICE	YES	217	892	0.01	0	0.0173	0.0087	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.026	FALSE	2	7	0	12	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	5	KANSL1	9741	chr17:44171926:-	ARL17B	40066	chr17:44388641:-	ONLY_REF_SPLICE	NO	99	20	0.06	0.23	0.0087	0.0433	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.23	0.052	TRUE	13	9	0	5	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RSL1D1--RP11-166B2.8	2	1	RSL1D1	5440	chr16:11940552:-	RP11-166B2.8	16875	chr16:11989346:+	ONLY_REF_SPLICE	YES	613	0	0	1	0.0173	0.0087	LOCAL_INVERSION:-:+:[64],RSL1D1->chr16:11929056-11945442:-,ribosomal_L1_domain_containing_1,RP11-166B2.8->chr16:11945506-11989468:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANKRD36BP2--SRSF1	2	0	ANKRD36BP2	1390	chr2:89065713:+	SRSF1	25561	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	ANKRD36BP2->ankyrin_repeat_domain_36B_pseudogene_2,chr2:89065324-89106126:+,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD44--PDHX	2	0	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	20	0	35	2	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLEC16A--IGL@	2	0	CLEC16A	25214	chr16:11154879:+	IGL@	101519	chr22:23237555:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	CLEC16A->C-type_lectin_domain_family_16_member_A,chr16:11038345-11276046:+,IGL@->Oncogene{Bushman}	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CNOT1--RNPC3	2	0	CNOT1	15152	chr16:58610367:-	RNPC3	68273	chr1:104097656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-,RNPC3->RNA_binding_region_(RNP1,_RRM)_containing_3,chr1:104068313-104097861:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LMNB2--BRE	2	0	LMNB2	2464	chr19:2444402:-	BRE	31429	chr2:28521205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	LMNB2->chr19:2427636-2456994:-,lamin_B2,BRE->Oncogene{Bushman},brain_and_reproductive_organ-expressed_(TNFRSF1A_modulator),chr2:28112808-28561768:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MBNL1--HPS3	2	0	MBNL1	3666	chr3:151986881:+	HPS3	29892	chr3:148857791:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	MBNL1->chr3:151961617-152183569:+,muscleblind_like_splicing_regulator_1,HPS3->HPS3,_biogenesis_of_lysosomal_organelles_complex_2_subunit_1,chr3:148847371-148891519:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTHFD2--REV1	2	0	MTHFD2	7879	chr2:74438993:+	REV1	25009	chr2:100052403:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	MTHFD2->chr2:74425689-74444692:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_2,_methenyltetrahydrofolate_cyclohydrolase,REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAF3--ATP5C1	2	0	TAF3	2615	chr10:7866523:+	ATP5C1	16733	chr10:7839010:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[10689],TAF3->TATA-box_binding_protein_associated_factor_3,chr10:7860467-8058590:+,ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	2	0	4	2	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WTAP--IGF2R	2	0	WTAP	2749	chr6:160148365:+	IGF2R	22001	chr6:160445604:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	WTAP->Wilms_tumor_1_associated_protein,chr6:160146617-160177351:+,IGF2R->Oncogene{Bushman},chr6:160390131-160534539:+,insulin_like_growth_factor_2_receptor	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXW11--UBTD2	1	2	FBXW11	1416	chr5:171433462:-	UBTD2	28205	chr5:171661362:-	ONLY_REF_SPLICE	YES	77	128	0.04	0.02	0.0087	0.0173	GTEx_v2:{count=3;pct=0.03%;dist=Adipose_-_Subcutaneous=1,Esophagus_-_Muscularis=1,Cells_-_Transformed_fibroblasts=1},FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,UBTD2->chr5:171636644-171711075:-,ubiquitin_domain_containing_2	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.026	TRUE	0	0	0	2	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CIITA--NUBP1	1	1	CIITA	9374	chr16:10998669:+	NUBP1	41525	chr16:10861806:+	ONLY_REF_SPLICE	YES	667	183	0	0.01	0.0087	0.0087	CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator,NUBP1->chr16:10837643-10863208:+,nucleotide_binding_protein_1	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXP1--CTD-2410N18.5	1	1	FOXP1	5088	chr3:71542577:-	CTD-2410N18.5	49662	chr5:133509713:-	ONLY_REF_SPLICE	YES	11	3	0.15	0.4	0.0087	0.0087	FOXP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:71003844-71633140:-,forkhead_box_P1,CTD-2410N18.5->chr5:133502861-133561762:-	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	0.4	0.0174	TRUE	0	0	0	1	0	TRUE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--PPP1R12C	1	1	OAZ1	1259	chr19:2269743:+	PPP1R12C	17683	chr19:55607703:-	ONLY_REF_SPLICE	YES	1880	91	0	0.02	0.0087	0.0087	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Breast=[count:4=pct:3.6],Lung=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Colon=[count:3=pct:1.6],Adipose_Tissue=[count:2=pct:0.7],Esophagus=[count:2=pct:0.5],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Nerve=[count:1=pct:0.6],Thyroid=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Liver=[count:1=pct:0.8]},GTEx_v2:{count=34;pct=0.39%;dist=Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=5,Artery_-_Tibial=4,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Esophagus_-_Muscularis=2,Colon_-_Sigmoid=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Breast_-_Mammary_Tissue=1,Minor_Salivary_Gland=1,Liver=1,Thyroid=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Cells_-_Transformed_fibroblasts=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0174	FALSE	23	0	0	3	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REL--ANKRD36BP2	1	1	REL	1330	chr2:61108985:+	ANKRD36BP2	34081	chr2:89091938:+	ONLY_REF_SPLICE	YES	1220	512	0	0	0.0087	0.0087	REL->Oncogene{Bushman},REL_proto-oncogene,_NF-kB_subunit,chr2:61108656-61158745:+,ANKRD36BP2->ankyrin_repeat_domain_36B_pseudogene_2,chr2:89065324-89106126:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000140
PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RSL1D1--RP11-166B2.8	1	1	RSL1D1	4467	chr16:11941525:-	RP11-166B2.8	16875	chr16:11989346:+	ONLY_REF_SPLICE	YES	527	0	0	1	0.0087	0.0087	LOCAL_INVERSION:-:+:[64],RSL1D1->chr16:11929056-11945442:-,ribosomal_L1_domain_containing_1,RP11-166B2.8->chr16:11945506-11989468:+	PFEIFFER_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0174	FALSE	0	0	0	1	0	FALSE	ACH-000140
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	106	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9387	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.9387	FALSE	369	2501	205	193	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	81	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7173	0.0974	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.8147	TRUE	508	994	45	981	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	61	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5402	0.0266	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.5668	FALSE	462	80	0	856	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	49	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	101	2	0.34	0.96	0.4339	0.0177	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.34	0.96	0.4516	TRUE	519	3926	326	965	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	43	15	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	1	0.97	0.98	0.3808	0.1328	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.97	0.98	0.5136	FALSE	515	4851	409	746	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	NOL9--DNAJC11	43	6	NOL9	3474	chr1:6609631:-	DNAJC11	24887	chr1:6727870:-	ONLY_REF_SPLICE	YES	8	48	0.86	0.51	0.3808	0.0531	{Klijn_CCL:Cervix=1},LOCAL_REARRANGEMENT:-:[79633],NOL9->chr1:6581407-6614595:-,nucleolar_protein_9,DNAJC11->DnaJ_heat_shock_protein_family_(Hsp40)_member_C11,chr1:6694228-6761984:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.51	0.86	0.4339	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	16	110	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1417	0.9741	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	1.1158	FALSE	369	2501	205	193	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	39	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	19	1	0.7	0.3454	0.0443	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.7	1	0.3897	TRUE	465	1949	224	605	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	34	5	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3011	0.0443	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.3454	FALSE	499	1288	110	792	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	26	33	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2302	0.2922	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.5224	FALSE	369	2501	205	193	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	17	59	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1505	0.5225	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.673	FALSE	369	2501	205	193	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	11	78	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0974	0.6907	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.7881	FALSE	369	2501	205	193	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-RNR2	29	2	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	11606	0	0	1	0.2568	0.0177	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1066_UPPER_AERODIGESTIVE_TRACT	0	1	0.2745	FALSE	63	17	1	58	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	WDR60--NCAPG2	28	3	WDR60	10704	chr7:158694507:+	NCAPG2	35685	chr7:158494629:-	ONLY_REF_SPLICE	YES	9	16	0.78	0.66	0.2479	0.0266	WDR60->WD_repeat_domain_60,chr7:158649269-158749438:+,NCAPG2->chr7:158424003-158497520:-,non-SMC_condensin_II_complex_subunit_G2	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.66	0.78	0.2745	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ND4L--MT-RNR2	28	0	MT-ND4L	1159	chrM:10628:+	MT-RNR2	4852	chrM:2225:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2479	0	LOCAL_REARRANGEMENT:+:[7241],MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.2479	FALSE	17	32	5	7	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	26	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2302	0.0443	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.2745	FALSE	499	1288	110	792	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	22	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1948	0.0177	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.2125	FALSE	416	2512	207	587	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	9	53	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0797	0.4693	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.549	FALSE	369	2501	205	193	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	22	1	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1948	0.0089	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.2037	FALSE	369	2501	205	193	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	HSP90AB1--MT-RNR2	21	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2078	0	0.01	1	0.186	0.0266	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.2126	FALSE	13	9	0	364	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	17	16	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.1505	0.1417	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.94	1	0.2922	FALSE	499	1288	110	792	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TC--MT-TY	21	0	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.186	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.186	FALSE	51	280	19	36	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	ZFYVE9--BTF3L4	19	1	ZFYVE9	1030	chr1:52608075:+	BTF3L4	28785	chr1:52525507:+	ONLY_REF_SPLICE	YES	3	14	0.87	0.59	0.1682	0.0089	LOCAL_REARRANGEMENT:+:[51658],ZFYVE9->chr1:52608046-52812358:+,zinc_finger_FYVE-type_containing_9,BTF3L4->basic_transcription_factor_3-like_4,chr1:52521797-52556388:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.59	0.87	0.1771	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	CTD-2008L17.1--RP11-456O19.2	16	10	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	3	0	0.9	1	0.1417	0.0886	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.9	1	0.2303	FALSE	20	187	4	79	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	15	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	10	1	0.67	0.1328	0.0443	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.67	1	0.1771	TRUE	458	1351	185	561	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	15	1	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1328	0.0089	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.1417	FALSE	369	2501	205	193	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	14	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.124	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.124	FALSE	292	1546	117	613	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-RNR2	13	2	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	11606	14023	0	0	0.1151	0.0177	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1066_UPPER_AERODIGESTIVE_TRACT	0	0	0.1328	FALSE	63	17	1	58	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	4	38	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0.3365	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.3719	FALSE	369	2501	205	193	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	12	1	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1063	0.0089	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.1152	FALSE	462	80	0	856	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	7	17	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.96	0.062	0.1505	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.96	1	0.2125	FALSE	467	2173	244	435	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	11	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0974	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0974	TRUE	0	0	0	434	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-494M8.4--OVCH2	10	1	RP11-494M8.4	6108	chr11:7900554:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.0886	0.0089	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.79	1	0.0975	FALSE	32	0	0	22	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	10	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0886	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0886	FALSE	369	2501	205	193	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	ZFYVE9--BTF3L4	9	1	ZFYVE9	1030	chr1:52608075:+	BTF3L4	30610	chr1:52530497:+	ONLY_REF_SPLICE	YES	3	159	0.77	0.06	0.0797	0.0089	LOCAL_REARRANGEMENT:+:[51658],ZFYVE9->chr1:52608046-52812358:+,zinc_finger_FYVE-type_containing_9,BTF3L4->basic_transcription_factor_3-like_4,chr1:52521797-52556388:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.06	0.77	0.0886	TRUE	0	1	0	1	1	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	16	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0.1417	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.186	FALSE	499	1288	110	792	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	9	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0797	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0797	FALSE	369	2501	205	193	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	8	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0708	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0708	FALSE	183	104	9	328	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	8	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0708	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0708	FALSE	183	104	9	328	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	HSP90AB1--MT-RNR2	7	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2097	0	0	1	0.062	0.0266	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1066_UPPER_AERODIGESTIVE_TRACT	0	1	0.0886	FALSE	13	9	0	364	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	4	15	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.9	1	0.0354	0.1328	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.9	1	0.1682	FALSE	407	2205	196	549	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-RNR2	7	2	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	11181	13789	0	0	0.062	0.0177	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1066_UPPER_AERODIGESTIVE_TRACT	0	0	0.0797	FALSE	63	17	1	58	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	6	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0.0531	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.1062	FALSE	462	80	0	856	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-662B19.2--WDR37	7	0	RP11-662B19.2	1500	chr8:28656158:+	WDR37	11399	chr10:1125951:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.062	0	GTEx_FI:{Brain=[count:6=pct:0.9],Testis=[count:6=pct:5.7],Lung=[count:6=pct:3.6],Nerve=[count:4=pct:2.4],Spleen=[count:3=pct:2.7],Adrenal_Gland=[count:2=pct:2.4],Breast=[count:2=pct:1.8],Colon=[count:2=pct:1.0],Esophagus=[count:1=pct:0.2],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},RP11-662B19.2->chr8:28655659-28656986:+,WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.062	TRUE	31	42	1	25	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	15	MT-ND6	1126	chrM:14548:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0266	0.1328	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.1594	FALSE	499	1288	110	792	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	JUP--MT-CO3	5	5	JUP	8234	chr17:39923803:-	MT-CO3	24120	chrM:9566:+	INCL_NON_REF_SPLICE	YES	1092	15171	0.01	0	0.0443	0.0443	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU1066_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0886	FALSE	0	0	0	33	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	ASS1--MT-CO3	6	0	ASS1	7359	chr9:133339534:+	MT-CO3	21796	chrM:9549:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0	ASS1->argininosuccinate_synthase_1,chr9:133320316-133376661:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0531	FALSE	0	0	0	12	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	6	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0531	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0531	TRUE	0	0	0	434	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	5	3	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0.0266	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0709	FALSE	462	80	0	856	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	2	15	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.0177	0.1328	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.89	1	0.1505	FALSE	275	511	55	178	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	6	MT-ND6	1111	chrM:14563:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0.0531	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0885	FALSE	499	1288	110	792	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	GNGT1--AC002076.10	5	1	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	10	0	0.38	1	0.0443	0.0089	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.38	1	0.0532	FALSE	0	28	0	37	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	5	1	MT-ATP6	1108	chrM:8634:+	MT-CO1	4835	chrM:6057:+	INCL_NON_REF_SPLICE	YES	9843	572	0	0.01	0.0443	0.0089	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1066_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0532	FALSE	183	97	9	327	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	9851	0	0	1	0.0443	0.0089	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1066_UPPER_AERODIGESTIVE_TRACT	0	1	0.0532	FALSE	63	17	1	58	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	1	17	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0089	0.1505	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.1594	FALSE	192	492	57	212	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MIR205HG--C9orf3	5	0	MIR205HG	4006	chr1:209605170:+	C9orf3	44812	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0443	0	GTEx_FI:{Esophagus=[count:44=pct:10.9],Skin=[count:41=pct:13.0],Vagina=[count:10=pct:18.2],Breast=[count:8=pct:7.2],Prostate=[count:3=pct:4.9],Salivary_Gland=[count:3=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Cervix_Uteri=[count:1=pct:12.5]},MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0443	TRUE	86	303	14	25	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	8	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0.0708	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0974	FALSE	499	1288	110	792	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0443	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0443	FALSE	462	80	0	856	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	HSP90AB1--MT-RNR2	4	3	HSP90AB1	7417	chr6:44221240:+	MT-RNR2	10867	chrM:1740:+	INCL_NON_REF_SPLICE	YES	2059	0	0	1	0.0354	0.0266	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1066_UPPER_AERODIGESTIVE_TRACT	0	1	0.062	FALSE	13	9	0	364	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	CHSY3--HSPA8P4	4	2	CHSY3	3444	chr5:129244053:+	HSPA8P4	11800	chr5:129476585:+	INCL_NON_REF_SPLICE	YES	26	1	0.19	0.86	0.0354	0.0177	NEIGHBORS_OVERLAP:+:+:[1919],CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,HSPA8P4->chr5:129475724-129477643:+,heat_shock_protein_family_A_(Hsp70)_member_8_pseudogene_4	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.19	0.86	0.0531	FALSE	89	26	1	44	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	CTD-2008L17.1--RP11-456O19.2	2	10	CTD-2008L17.1	3828	chr18:53685010:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0177	0.0886	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.92	1	0.1063	FALSE	1	24	0	14	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	JUP--MT-CO3	3	6	JUP	8242	chr17:39923795:-	MT-CO3	24128	chrM:9574:+	INCL_NON_REF_SPLICE	YES	1028	14833	0.01	0	0.0266	0.0531	JUP->chr17:39775692-39943183:-,junction_plakoglobin,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU1066_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0797	FALSE	0	0	0	33	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-RNR2	4	2	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	11174	13856	0	0	0.0354	0.0177	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1066_UPPER_AERODIGESTIVE_TRACT	0	0	0.0531	FALSE	63	17	1	58	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	GNGT1--AC002076.10	4	1	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	10	0	0.33	1	0.0354	0.0089	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.33	1	0.0443	FALSE	0	10	0	30	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-RNR2	4	1	MT-ATP6	1143	chrM:8669:+	MT-RNR2	5305	chrM:2294:+	INCL_NON_REF_SPLICE	YES	11082	14774	0	0	0.0354	0.0089	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1066_UPPER_AERODIGESTIVE_TRACT	0	0	0.0443	FALSE	63	17	1	58	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	C1QTNF6--MT-ND4L	4	0	C1QTNF6	14340	chr22:37576720:-	MT-ND4L	17869	chrM:10485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	C1QTNF6->C1q_and_tumor_necrosis_factor_related_protein_6,chr22:37576207-37595425:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0354	FALSE	0	0	0	1	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	4	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0354	FALSE	183	104	9	328	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-CO1	3	4	MT-ATP6	1444	chrM:8970:+	MT-CO1	5206	chrM:6428:+	INCL_NON_REF_SPLICE	YES	10550	8876	0	0	0.0266	0.0354	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1066_UPPER_AERODIGESTIVE_TRACT	0	0	0.062	FALSE	183	104	9	328	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0354	FALSE	499	1288	110	792	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0354	TRUE	0	0	0	434	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	4	0	NPM1P24	1533	chr10:74677760:-	SET	12301	chr9:131456196:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0354	TRUE	0	0	0	434	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	AC104389.28--HBE1	3	3	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	3	1	0.67	0.86	0.0266	0.0266	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.67	0.86	0.0532	TRUE	0	48	0	65	48	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MEIS2--COL9A1	3	2	MEIS2	9838	chr15:37375972:-	COL9A1	30379	chr6:71010089:-	ONLY_REF_SPLICE	YES	33	0	0.13	1	0.0266	0.0177	MEIS2->Meis_homeobox_2,chr15:37181406-37393504:-,COL9A1->chr6:70924764-71012786:-,collagen_type_IX_alpha_1	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.13	1	0.0443	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1400	chrM:8926:+	MT-RNR2	5229	chrM:2218:+	INCL_NON_REF_SPLICE	YES	12254	14347	0	0	0.0266	0.0177	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1066_UPPER_AERODIGESTIVE_TRACT	0	0	0.0443	FALSE	63	17	1	58	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-RNR2	3	2	MT-ATP6	1295	chrM:8821:+	MT-RNR2	5236	chrM:2225:+	INCL_NON_REF_SPLICE	YES	16147	14041	0	0	0.0266	0.0177	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1066_UPPER_AERODIGESTIVE_TRACT	0	0	0.0443	FALSE	63	17	1	58	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	10118	14000	0	0	0.0266	0.0089	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1066_UPPER_AERODIGESTIVE_TRACT	0	0	0.0355	FALSE	63	17	1	58	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	8953	0	0	1	0.0266	0.0089	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1066_UPPER_AERODIGESTIVE_TRACT	0	1	0.0355	FALSE	63	17	1	58	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	1	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0.0089	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0355	FALSE	369	2501	205	193	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	3	1	MT-TA	1059	chrM:5597:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0.0089	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0355	FALSE	369	2501	205	193	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5387	chrM:2376:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0266	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0266	FALSE	63	17	1	58	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	CTD-2008L17.1--RP11-456O19.2	2	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	3	2	0.62	0.71	0.0177	0.0266	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.62	0.71	0.0443	FALSE	33	240	4	98	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-141M1.3--STARD13	2	3	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	89	0.71	0.05	0.0177	0.0266	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.05	0.71	0.0443	FALSE	49	120	16	70	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	1	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	20	0	0.26	1	0.0089	0.0531	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.26	1	0.062	FALSE	164	806	69	479	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	EFNA5--FBXL17	2	0	EFNA5	1407	chr5:107006190:-	FBXL17	28104	chr5:107197561:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	GTEx_FI:{Blood_Vessel=[count:1=pct:0.3],Brain=[count:1=pct:0.2]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Brain_-_Frontal_Cortex_(BA9)=1,Nerve_-_Tibial=1},{Klijn_CCL:Head-Neck=1,Lung=1},EFNA5->chr5:106712590-107006596:-,ephrin_A5,FBXL17->F-box_and_leucine-rich_repeat_protein_17,chr5:107194736-107717799:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	GNE--RECK	2	0	GNE	1163	chr9:36276891:-	RECK	22100	chr9:36052262:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	LOCAL_INVERSION:-:+:[89990],GNE->chr9:36214438-36277053:-,glucosamine_(UDP-N-acetyl)-2-epimerase/N-acetylmannosamine_kinase,RECK->chr9:36036430-36124448:+,reversion_inducing_cysteine_rich_protein_with_kazal_motifs	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	LIN7C--SEP15	2	0	LIN7C	3694	chr11:27520906:-	SEP15	15306	chr1:87346408:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	LIN7C->chr11:27516123-27528320:-,lin-7_homolog_C,_crumbs_cell_polarity_complex_component,SEP15->chr1:87328132-87380107:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	PHAX--GRAMD3	2	0	PHAX	3414	chr5:125939875:+	GRAMD3	18956	chr5:125801118:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	PHAX->chr5:125935960-125962944:+,phosphorylated_adaptor_for_RNA_export,GRAMD3->GRAM_domain_containing_3,chr5:125695824-125832186:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-435B5.4--NOC3L	2	0	RP11-435B5.4	2843	chr1:143465380:-	NOC3L	34133	chr10:96099677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	RP11-435B5.4->chr1:143354963-143467632:-,NOC3L->NOC3_like_DNA_replication_regulator,chr10:96075004-96122716:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RPS6KB1--VMP1	2	0	RPS6KB1	1240	chr17:57970686:+	VMP1	40151	chr17:57915656:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	YOSHIHARA_TCGA_num_samples[BLCA:1|BRCA:5|HNSC:3|LUAD:8|OV:1],{Klijn_CCL:Lung=4,Head-Neck=2,Breast=1,Skin=1,Kidney=1,Pancreas=1},LOCAL_REARRANGEMENT:+:[50831],RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	9	0	11	6	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	SPIN1--GTF2F2	2	0	SPIN1	1120	chr9:91003453:+	GTF2F2	18898	chr13:45710868:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	SPIN1->chr9:91003334-91093609:+,spindlin_1,GTF2F2->chr13:45694650-45858237:+,general_transcription_factor_IIF_subunit_2	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	ZMIZ1--FBXW4	2	0	ZMIZ1	4523	chr10:80921890:+	FBXW4	38558	chr10:103436193:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	ZMIZ1->Oncogene{Bushman},chr10:80828792-81076276:+,zinc_finger_MIZ-type_containing_1,FBXW4->F-box_and_WD_repeat_domain_containing_4,Oncogene{Bushman},chr10:103370423-103455052:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	ZNF33B--BMS1	2	0	ZNF33B	3753	chr10:43127377:-	BMS1	31778	chr10:43312047:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0177	0	ZNF33B->chr10:43069633-43134016:-,chr10:43084555-43133992:-,zinc_finger_protein_33B,BMS1->BMS1,_ribosome_biogenesis_factor,chr10:43278249-43330385:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0177	TRUE	0	0	0	1	0	TRUE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	CTC-786C10.1--GSE1	1	3	CTC-786C10.1	1532	chr16:85205413:+	GSE1	8143	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	10	1	0.29	0.0089	0.0266	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.29	1	0.0355	TRUE	5	1	0	10	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-120D5.1--MID1	1	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	25	0.43	0.11	0.0089	0.0177	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.11	0.43	0.0266	FALSE	16	356	14	466	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-141M1.3--STARD13	1	2	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	2	89	0.6	0.03	0.0089	0.0177	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.03	0.6	0.0266	FALSE	141	264	50	91	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-141M1.3--STARD13	1	2	RP11-141M1.3	5599	chr13:34098375:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	NO	6	89	0.33	0.03	0.0089	0.0177	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.03	0.33	0.0266	FALSE	9	22	2	16	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-141M1.3--STARD13	1	2	RP11-141M1.3	6791	chr13:34094095:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	4	89	0.43	0.03	0.0089	0.0177	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.03	0.43	0.0266	FALSE	1	2	1	7	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	SIL1--CTNNA1	1	2	SIL1	15184	chr5:138456724:-	CTNNA1	38160	chr5:138117612:+	ONLY_REF_SPLICE	YES	168	7	0.02	0.3	0.0089	0.0177	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=6;pct=0.07%;dist=Cells_-_Transformed_fibroblasts=2,Artery_-_Aorta=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1},{Klijn_CCL:Skin=1},LOCAL_INVERSION:-:+:[11686],SIL1->SIL1_nucleotide_exchange_factor,chr5:138282409-138629246:-,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.02	0.3	0.0266	TRUE	0	1	0	2	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	APLP2--PICALM	1	1	APLP2	17035	chr11:130003623:+	PICALM	31212	chr11:85742653:-	ONLY_REF_SPLICE	YES	2243	199	0	0.01	0.0089	0.0089	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},APLP2->amyloid_beta_precursor_like_protein_2,chr11:129939732-130014699:+,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	SNU1066_UPPER_AERODIGESTIVE_TRACT	0	0.01	0.0178	FALSE	0	0	0	1	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	NO	21	14	0.09	0.12	0.0089	0.0089	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.09	0.12	0.0178	FALSE	118	557	29	88	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	GMDS-AS1--GMDS	1	1	GMDS-AS1	2273	chr6:2249160:+	GMDS	43013	chr6:1742820:-	ONLY_REF_SPLICE	NO	38	103	0.05	0.02	0.0089	0.0089	GTEx_FI:{Salivary_Gland=[count:2=pct:5.1],Thyroid=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},LOCAL_INVERSION:+:-:[56],GMDS-AS1->GMDS_antisense_RNA_1_(head_to_head),chr6:2245982-2482256:+,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.02	0.05	0.0178	TRUE	1	4	0	3	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	GMDS-AS1--GMDS	1	1	GMDS-AS1	2273	chr6:2249160:+	GMDS	36647	chr6:2116114:-	ONLY_REF_SPLICE	YES	38	38	0.05	0.05	0.0089	0.0089	GTEx_FI:{Salivary_Gland=[count:2=pct:5.1],Thyroid=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},LOCAL_INVERSION:+:-:[56],GMDS-AS1->GMDS_antisense_RNA_1_(head_to_head),chr6:2245982-2482256:+,GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.05	0.05	0.0178	TRUE	0	0	0	1	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0089	0.0089	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU1066_UPPER_AERODIGESTIVE_TRACT	1	1	0.0178	FALSE	93	270	15	244	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-494M8.4--OVCH2	1	1	RP11-494M8.4	1353	chr11:7927150:-	OVCH2	15008	chr11:7726221:-	ONLY_REF_SPLICE	NO	2	0	0.5	1	0.0089	0.0089	NEIGHBORS[47972],RP11-494M8.4->chr11:7775940-7927502:-,OVCH2->chr11:7710669-7727968:-,ovochymase_2_(gene/pseudogene)	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.5	1	0.0178	FALSE	60	13	8	23	0	FALSE	ACH-000682
SNU1066_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	55	1	0.04	0.0089	0.0089	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU1066_UPPER_AERODIGESTIVE_TRACT	0.04	1	0.0178	TRUE	64	13	3	59	0	FALSE	ACH-000682
NCIH1395_LUNG	COX5A--PARP16	1160	353	COX5A	4843	chr15:75215989:-	PARP16	21901	chr15:65527161:-	ONLY_REF_SPLICE	YES	412	0	0.79	1	11.4327	3.4791	COX5A->chr15:75212132-75230509:-,cytochrome_c_oxidase_subunit_5A,PARP16->chr15:65526798-65592956:-,poly(ADP-ribose)_polymerase_family_member_16	NCIH1395_LUNG	0.79	1	14.9118	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	PVT1--RBBP8NL	249	93	PVT1	1202	chr8:128806980:+	RBBP8NL	29526	chr20:60994786:-	ONLY_REF_SPLICE	YES	337	0	0.5	1	2.4541	0.9166	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RBBP8NL->RBBP8_N-terminal_like,chr20:60985293-61002589:-	NCIH1395_LUNG	0.5	1	3.3707	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TN	244	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.4048	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1395_LUNG	1	1	2.4048	FALSE	369	2501	205	193	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	235	34	MT-ND4	1170	chrM:10929:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	30	0	0.9	1	2.3161	0.3351	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.9	1	2.6512	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	HSPBP1--GRK5	175	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.7248	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	NCIH1395_LUNG	1	1	1.7248	TRUE	1	39	0	134	39	FALSE	ACH-000327
NCIH1395_LUNG	GAB2--PACS1	141	26	GAB2	1703	chr11:78128692:-	PACS1	28311	chr11:65960957:+	ONLY_REF_SPLICE	YES	14	11	0.92	0.94	1.3897	0.2562	GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1	NCIH1395_LUNG	0.92	0.94	1.6459	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	OSBPL2--CASC11	135	29	OSBPL2	2239	chr20:60831277:+	CASC11	22489	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1497	0	0.1	1	1.3305	0.2858	OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	NCIH1395_LUNG	0.1	1	1.6163	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	PVT1--SNRPB2	121	55	PVT1	1202	chr8:128806980:+	SNRPB2	33649	chr20:16720970:+	ONLY_REF_SPLICE	YES	337	67	0.34	0.72	1.1925	0.5421	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNRPB2->chr20:16710606-16722421:+,small_nuclear_ribonucleoprotein_polypeptide_B2	NCIH1395_LUNG	0.34	0.72	1.7346	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TC	128	17	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2615	0.1675	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1395_LUNG	1	1	1.429	FALSE	462	80	0	856	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	118	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.163	0.0394	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	1	1	1.2024	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	HS6ST2--GPC3	109	27	HS6ST2	4211	chrX:132090836:-	GPC3	23738	chrX:132795878:-	ONLY_REF_SPLICE	YES	47	0	0.74	1	1.0743	0.2661	{Klijn_CCL:Lung=1},HS6ST2->chrX:131760044-132095423:-,heparan_sulfate_6-O-sulfotransferase_2,GPC3->Oncogene{Bushman},chrX:132669773-133119922:-,glypican_3	NCIH1395_LUNG	0.74	1	1.3404	TRUE	0	1	0	2	0	TRUE	ACH-000327
NCIH1395_LUNG	ZFP91--CLPB	90	32	ZFP91	2541	chr11:58352357:+	CLPB	28130	chr11:72040848:-	ONLY_REF_SPLICE	YES	39	65	0.76	0.65	0.887	0.3154	ZFP91->ZFP91_zinc_finger_protein,chr11:58346584-58388515:+,CLPB->ClpB_homolog,_mitochondrial_AAA_ATPase_chaperonin,chr11:72003469-72145692:-	NCIH1395_LUNG	0.65	0.76	1.2024	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	TIMM23B--LINC00843	85	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.8377	0.1873	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1395_LUNG	0.98	1	1.025	TRUE	508	994	45	981	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	38	184	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	8044	1	0.03	1	0.3745	1.8135	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.03	1	2.188	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	LAMA5--RBBP8NL	75	15	LAMA5	2517	chr20:60937456:-	RBBP8NL	46243	chr20:60993521:-	ONLY_REF_SPLICE	YES	224	54	0.29	0.62	0.7392	0.1478	LOCAL_REARRANGEMENT:-:[42925],LAMA5->chr20:60883011-60942368:-,laminin_subunit_alpha_5,RBBP8NL->RBBP8_N-terminal_like,chr20:60985293-61002589:-	NCIH1395_LUNG	0.29	0.62	0.887	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	11	271	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	24	0	0.92	1	0.1084	2.6709	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.92	1	2.7793	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	6	287	MT-ND4	2305	chrM:12064:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	10	0	0.97	1	0.0591	2.8286	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.97	1	2.8877	FALSE	268	700	35	284	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	7	280	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	720	0	0.29	1	0.069	2.7596	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.29	1	2.8286	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	7	279	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	811	0	0.26	1	0.069	2.7498	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.26	1	2.8188	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	6	281	MT-ND4	1519	chrM:11278:+	MT-ND4L	5394	chrM:10485:+	INCL_NON_REF_SPLICE	YES	976	0	0.23	1	0.0591	2.7695	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.23	1	2.8286	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	7	273	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	43	0	0.87	1	0.069	2.6906	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.87	1	2.7596	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	4	284	MT-ND4	1793	chrM:11552:+	MT-ND4L	5383	chrM:10474:+	INCL_NON_REF_SPLICE	YES	8571	0	0.03	1	0.0394	2.799	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.03	1	2.8384	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	287	MT-ND4	2279	chrM:12038:+	MT-ND4L	5519	chrM:10610:+	INCL_NON_REF_SPLICE	YES	162	0	0.64	1	0.0296	2.8286	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.64	1	2.8582	FALSE	288	732	40	297	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	287	MT-ND4	1967	chrM:11726:+	MT-ND4L	5384	chrM:10475:+	INCL_NON_REF_SPLICE	YES	18796	0	0.02	1	0.0296	2.8286	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.02	1	2.8582	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	8	267	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	14	0	0.95	1	0.0788	2.6315	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.95	1	2.7103	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	PVT1--RBBP8NL	50	99	PVT1	2457	chr8:128808254:+	RBBP8NL	29526	chr20:60994786:-	ONLY_REF_SPLICE	YES	322	0	0.32	1	0.4928	0.9757	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RBBP8NL->RBBP8_N-terminal_like,chr20:60985293-61002589:-	NCIH1395_LUNG	0.32	1	1.4685	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	285	MT-ND4	2216	chrM:11975:+	MT-ND4L	5533	chrM:10624:+	INCL_NON_REF_SPLICE	YES	6416	0	0.04	1	0.0296	2.8089	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.04	1	2.8385	FALSE	297	748	40	298	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	284	MT-ND4	1809	chrM:11568:+	MT-ND4L	5399	chrM:10490:+	INCL_NON_REF_SPLICE	YES	9801	0	0.03	1	0.0296	2.799	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.03	1	2.8286	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	6	272	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	40	0	0.87	1	0.0591	2.6808	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.87	1	2.7399	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	283	MT-ND4	1754	chrM:11513:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	YES	6530	0	0.04	1	0.0296	2.7892	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.04	1	2.8188	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	283	MT-ND4	1738	chrM:11497:+	MT-ND4L	5511	chrM:10602:+	INCL_NON_REF_SPLICE	YES	5725	0	0.05	1	0.0296	2.7892	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.05	1	2.8188	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	5	273	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	43	0	0.87	1	0.0493	2.6906	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.87	1	2.7399	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	7	265	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	13	0	0.95	1	0.069	2.6118	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.95	1	2.6808	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	6	268	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	19	0	0.94	1	0.0591	2.6413	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.94	1	2.7004	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	4	273	MT-ND4	1197	chrM:10956:+	MT-ND4L	5432	chrM:10523:+	INCL_NON_REF_SPLICE	YES	41	0	0.87	1	0.0394	2.6906	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.87	1	2.73	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MCF2L--TSPAN3	63	35	MCF2L	11149	chr13:113623772:+	TSPAN3	65554	chr15:77348597:-	ONLY_REF_SPLICE	YES	15	364	0.87	0.21	0.6209	0.345	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,TSPAN3->chr15:77336359-77376326:-,tetraspanin_3	NCIH1395_LUNG	0.21	0.87	0.9659	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	4	271	MT-ND4	1220	chrM:10979:+	MT-ND4L	5536	chrM:10627:+	INCL_NON_REF_SPLICE	YES	43	0	0.86	1	0.0394	2.6709	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.86	1	2.7103	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	275	MT-ND4	1263	chrM:11022:+	MT-ND4L	5489	chrM:10580:+	INCL_NON_REF_SPLICE	YES	65	0	0.81	1	0.0296	2.7103	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.81	1	2.7399	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	4	269	MT-ND4	1122	chrM:10881:+	MT-ND4L	5515	chrM:10606:+	INCL_NON_REF_SPLICE	YES	17	0	0.94	1	0.0394	2.6512	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.94	1	2.6906	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	272	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	32	0	0.9	1	0.0296	2.6808	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.9	1	2.7104	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	272	MT-ND4	1178	chrM:10937:+	MT-ND4L	5464	chrM:10555:+	INCL_NON_REF_SPLICE	YES	32	0	0.9	1	0.0296	2.6808	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.9	1	2.7104	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	271	MT-ND4	1192	chrM:10951:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	YES	37	0	0.88	1	0.0296	2.6709	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.88	1	2.7005	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	270	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	24	0	0.92	1	0.0296	2.6611	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.92	1	2.6907	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	14	204	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	8	0	0.96	1	0.138	2.0106	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.96	1	2.1486	FALSE	344	821	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	4	235	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	10	0	0.96	1	0.0394	2.3161	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.96	1	2.3555	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TN	29	123	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2858	1.2123	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1395_LUNG	1	1	1.4981	FALSE	369	2501	205	193	0	FALSE	ACH-000327
NCIH1395_LUNG	PVT1--RBBP8NL	32	105	PVT1	2520	chr8:128808317:+	RBBP8NL	29526	chr20:60994786:-	ONLY_REF_SPLICE	YES	327	0	0.3	1	0.3154	1.0349	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,RBBP8NL->RBBP8_N-terminal_like,chr20:60985293-61002589:-	NCIH1395_LUNG	0.3	1	1.3503	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	211	MT-ND4	1285	chrM:11044:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	83	1	0.72	1	0.0296	2.0796	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.72	1	2.1092	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	193	MT-ND4	1093	chrM:10852:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	11	1	0.95	0.99	0.0296	1.9022	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.95	0.99	1.9318	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	4	188	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	14	1	0.93	0.99	0.0394	1.8529	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.93	0.99	1.8923	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	7	174	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	107	1	0.63	0.99	0.069	1.7149	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.63	0.99	1.7839	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	185	MT-ND4	1199	chrM:10958:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	44	1	0.81	0.99	0.0296	1.8233	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.81	0.99	1.8529	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	39	38	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	7	0	0.92	1	0.3844	0.3745	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	0.92	1	0.7589	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	TIMM23--RP11-464F9.1	47	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	136	7	0.26	0.88	0.4632	0.0197	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1395_LUNG	0.26	0.88	0.4829	TRUE	519	3926	326	965	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	174	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	91	1	0.66	0.99	0.0296	1.7149	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.66	0.99	1.7445	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TN	37	31	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3647	0.3055	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1395_LUNG	1	1	0.6702	FALSE	369	2501	205	193	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	166	MT-ND4	1058	chrM:10817:+	MT-ND4L	5526	chrM:10617:+	INCL_NON_REF_SPLICE	YES	8	0	0.95	1	0.0296	1.6361	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.95	1	1.6657	FALSE	344	821	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	EPS15L1--CALR3	42	1	EPS15L1	1173	chr19:16582724:-	CALR3	38784	chr19:16593596:-	ONLY_REF_SPLICE	YES	1	0	0.98	1	0.4139	0.0099	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[6972],EPS15L1->Oncogene{Bushman},chr19:16466050-16582896:-,epidermal_growth_factor_receptor_pathway_substrate_15-like_1,CALR3->calreticulin_3,chr19:16589868-16607003:-	NCIH1395_LUNG	0.98	1	0.4238	TRUE	0	1	0	1	1	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	151	MT-ND4	1170	chrM:10929:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	30	1	0.84	0.99	0.0296	1.4882	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.84	0.99	1.5178	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	COX5A--PARP16	13	104	COX5A	3720	chr15:75219107:-	PARP16	21901	chr15:65527161:-	ONLY_REF_SPLICE	YES	1450	0	0.07	1	0.1281	1.025	COX5A->chr15:75212132-75230509:-,cytochrome_c_oxidase_subunit_5A,PARP16->chr15:65526798-65592956:-,poly(ADP-ribose)_polymerase_family_member_16	NCIH1395_LUNG	0.07	1	1.1531	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	29	36	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	10895	0	0.01	1	0.2858	0.3548	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.01	1	0.6406	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	138	MT-ND4	1137	chrM:10896:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	19	1	0.88	0.99	0.0296	1.3601	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.88	0.99	1.3897	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TN	37	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3647	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1395_LUNG	1	1	0.3647	FALSE	369	2501	205	193	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	5	127	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	47	1	0.74	0.99	0.0493	1.2517	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.74	0.99	1.301	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	129	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	26	1	0.84	0.99	0.0296	1.2714	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.84	0.99	1.301	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TN	19	63	MT-TA	1054	chrM:5602:-	MT-TN	4092	chrM:5707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1873	0.6209	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1395_LUNG	1	1	0.8082	FALSE	369	2501	205	193	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	33	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3252	0.0394	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	1	1	0.3646	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TN	12	86	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1183	0.8476	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1395_LUNG	1	1	0.9659	FALSE	369	2501	205	193	0	FALSE	ACH-000327
NCIH1395_LUNG	RP11-96H19.1--RP11-446N19.1	29	17	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	0	0.9	1	0.2858	0.1675	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1395_LUNG	0.9	1	0.4533	FALSE	515	4851	409	746	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TN	21	45	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.207	0.4435	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1395_LUNG	1	1	0.6505	FALSE	369	2501	205	193	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TC--MT-TY	32	1	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3154	0.0099	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1395_LUNG	1	1	0.3253	FALSE	51	280	19	36	0	FALSE	ACH-000327
NCIH1395_LUNG	MCF2L--TSPAN3	24	29	MCF2L	10405	chr13:113623028:+	TSPAN3	65554	chr15:77348597:-	ONLY_REF_SPLICE	YES	10	364	0.84	0.13	0.2365	0.2858	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,TSPAN3->chr15:77336359-77376326:-,tetraspanin_3	NCIH1395_LUNG	0.13	0.84	0.5223	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TC	31	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3055	0.0099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1395_LUNG	1	1	0.3154	FALSE	462	80	0	856	0	FALSE	ACH-000327
NCIH1395_LUNG	NIPA2--POLA1	31	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3055	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	NCIH1395_LUNG	1	1	0.3055	TRUE	46	1352	75	139	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	22	35	MT-ND4	1447	chrM:11206:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	444	0	0.11	1	0.2168	0.345	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.11	1	0.5618	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	18	36	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	619	0	0.08	1	0.1774	0.3548	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.08	1	0.5322	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	7	79	MT-ND4	1519	chrM:11278:+	MT-ND4L	5646	chrM:10737:+	INCL_NON_REF_SPLICE	YES	976	0	0.08	1	0.069	0.7786	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.08	1	0.8476	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	13	54	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	976	0	0.06	1	0.1281	0.5322	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.06	1	0.6603	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	PVT1--SNRPB2	11	60	PVT1	2457	chr8:128808254:+	SNRPB2	33649	chr20:16720970:+	ONLY_REF_SPLICE	YES	322	67	0.18	0.51	0.1084	0.5913	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNRPB2->chr20:16710606-16722421:+,small_nuclear_ribonucleoprotein_polypeptide_B2	NCIH1395_LUNG	0.18	0.51	0.6997	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	5	82	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	8	1	0.92	0.99	0.0493	0.8082	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.92	0.99	0.8575	FALSE	344	821	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	4	81	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	4	0	0.96	1	0.0394	0.7983	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.96	1	0.8377	FALSE	344	821	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	5	77	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0493	0.7589	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	0.99	1	0.8082	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TC	20	16	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1971	0.1577	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1395_LUNG	1	1	0.3548	FALSE	462	80	0	856	0	FALSE	ACH-000327
NCIH1395_LUNG	MCF2L--TSPAN3	20	13	MCF2L	2233	chr13:113556685:+	TSPAN3	65554	chr15:77348597:-	ONLY_REF_SPLICE	YES	5	364	0.87	0.08	0.1971	0.1281	MCF2L->MCF.2_cell_line_derived_transforming_sequence_like,chr13:113548692-113754053:+,TSPAN3->chr15:77336359-77376326:-,tetraspanin_3	NCIH1395_LUNG	0.08	0.87	0.3252	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	80	MT-ND4	1269	chrM:11028:+	MT-ND4L	5644	chrM:10735:+	INCL_NON_REF_SPLICE	YES	67	0	0.55	1	0.0296	0.7885	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.55	1	0.8181	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	14	34	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	43	0	0.53	1	0.138	0.3351	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.53	1	0.4731	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	PVT1--SNRPB2	6	64	PVT1	2520	chr8:128808317:+	SNRPB2	33649	chr20:16720970:+	ONLY_REF_SPLICE	YES	327	67	0.18	0.51	0.0591	0.6308	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNRPB2->chr20:16710606-16722421:+,small_nuclear_ribonucleoprotein_polypeptide_B2	NCIH1395_LUNG	0.18	0.51	0.6899	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	3	75	MT-ND6	1090	chrM:14584:-	MT-TE	4503	chrM:14765:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0.7392	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	1	1	0.7688	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	4	66	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	4	0	0.95	1	0.0394	0.6505	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.95	1	0.6899	FALSE	344	821	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-CO2--MT-ND2	20	1	MT-CO2	1240	chrM:7825:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	17233	184	0	0.1	0.1971	0.0099	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1395_LUNG	0	0.1	0.207	FALSE	105	46	5	21	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	7	52	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	6	0	0.91	1	0.069	0.5125	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	0.91	1	0.5815	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	CHORDC1--RP11-164N3.1	18	6	CHORDC1	17575	chr11:89935099:-	RP11-164N3.1	21371	chr11:87783298:+	INCL_NON_REF_SPLICE	YES	17	0	0.59	1	0.1774	0.0591	CHORDC1->chr11:89934328-89956532:-,cysteine_and_histidine_rich_domain_containing_1,RP11-164N3.1->chr11:87783274-87795278:+	NCIH1395_LUNG	0.59	1	0.2365	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	13	26	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	37	0	0.51	1	0.1281	0.2562	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.51	1	0.3843	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TN	4	62	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.6111	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1395_LUNG	1	1	0.6505	FALSE	369	2501	205	193	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-CO2--MT-ND2	19	1	MT-CO2	1123	chrM:7708:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	4170	184	0	0.1	0.1873	0.0099	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1395_LUNG	0	0.1	0.1972	FALSE	105	46	5	21	0	FALSE	ACH-000327
NCIH1395_LUNG	COX5A--PARP16	9	40	COX5A	2598	chr15:75221457:-	PARP16	21901	chr15:65527161:-	ONLY_REF_SPLICE	YES	1486	0	0.03	1	0.0887	0.3942	COX5A->chr15:75212132-75230509:-,cytochrome_c_oxidase_subunit_5A,PARP16->chr15:65526798-65592956:-,poly(ADP-ribose)_polymerase_family_member_16	NCIH1395_LUNG	0.03	1	0.4829	TRUE	0	0	0	1	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	8	42	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	8	1	0.86	0.98	0.0788	0.4139	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.86	0.98	0.4927	FALSE	344	821	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	5	54	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	7459	0	0.01	1	0.0493	0.5322	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.01	1	0.5815	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND3--MT-ATP8	18	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1774	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1395_LUNG	1	1	0.1774	FALSE	351	233	23	137	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	9	34	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	45	0	0.49	1	0.0887	0.3351	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.49	1	0.4238	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	4	52	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	34	0	0.62	1	0.0394	0.5125	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.62	1	0.5519	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	4	52	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	7	0	0.89	1	0.0394	0.5125	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	0.89	1	0.5519	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	PVT1--SNRPB2	1	64	PVT1	3930	chr8:128815805:+	SNRPB2	33649	chr20:16720970:+	ONLY_REF_SPLICE	NO	329	67	0.16	0.49	0.0099	0.6308	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNRPB2->chr20:16710606-16722421:+,small_nuclear_ribonucleoprotein_polypeptide_B2	NCIH1395_LUNG	0.16	0.49	0.6407	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	4	51	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	26	0	0.68	1	0.0394	0.5026	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.68	1	0.542	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TN	4	51	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.5026	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1395_LUNG	1	1	0.542	FALSE	369	2501	205	193	0	FALSE	ACH-000327
NCIH1395_LUNG	RP11-123O10.4--GRIP1	16	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1577	0.0296	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1395_LUNG	1	1	0.1873	FALSE	416	2512	207	587	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	53	MT-ND4	1289	chrM:11048:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	84	0	0.4	1	0.0296	0.5224	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.4	1	0.552	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	53	MT-ND4	1342	chrM:11101:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	153	0	0.27	1	0.0296	0.5224	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.27	1	0.552	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	52	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	38	0	0.59	1	0.0296	0.5125	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.59	1	0.5421	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TN	16	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1577	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1395_LUNG	1	1	0.1577	FALSE	369	2501	205	193	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	6	38	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	10	0	0.81	1	0.0591	0.3745	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	0.81	1	0.4336	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	6	38	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	7	0	0.86	1	0.0591	0.3745	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	0.86	1	0.4336	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	3	49	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	7	0	0.88	1	0.0296	0.4829	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	0.88	1	0.5125	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	6	36	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	7459	0	0.01	1	0.0591	0.3548	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.01	1	0.4139	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	ZFP91--CLPB	8	27	ZFP91	1512	chr11:58347095:+	CLPB	28130	chr11:72040848:-	ONLY_REF_SPLICE	YES	36	65	0.49	0.35	0.0788	0.2661	ZFP91->ZFP91_zinc_finger_protein,chr11:58346584-58388515:+,CLPB->ClpB_homolog,_mitochondrial_AAA_ATPase_chaperonin,chr11:72003469-72145692:-	NCIH1395_LUNG	0.35	0.49	0.3449	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	RBPMS2--RP11-100M12.3	14	2	RBPMS2	1355	chr15:65067432:-	RP11-100M12.3	12439	chr15:27786533:-	INCL_NON_REF_SPLICE	YES	2	1	0.89	0.94	0.138	0.0197	RBPMS2->RNA_binding_protein_with_multiple_splicing_2,chr15:65032091-65067786:-,RP11-100M12.3->chr15:27728181-27787137:-	NCIH1395_LUNG	0.89	0.94	0.1577	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	3	45	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	9	0	0.84	1	0.0296	0.4435	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	0.84	1	0.4731	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TN	14	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.138	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1395_LUNG	1	1	0.138	FALSE	369	2501	205	193	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	6	31	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0.3055	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	1	1	0.3646	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	3	43	MT-ND6	1126	chrM:14548:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0296	0.4238	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	0.98	1	0.4534	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-CO2--MT-ND2	13	2	MT-CO2	1320	chrM:7905:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	19801	184	0	0.08	0.1281	0.0197	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1395_LUNG	0	0.08	0.1478	FALSE	105	46	5	21	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	5	33	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	26	0	0.59	1	0.0493	0.3252	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.59	1	0.3745	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	13	1	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1281	0.0099	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	1	1	0.138	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	4	35	MT-ND4	1248	chrM:11007:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	56	0	0.41	1	0.0394	0.345	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.41	1	0.3844	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	11	7	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.95	0.1084	0.069	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.95	1	0.1774	FALSE	344	821	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	5	31	MT-ND6	1053	chrM:14621:-	MT-TE	4526	chrM:14742:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0.3055	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	1	1	0.3548	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	38	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	11	0	0.79	1	0.0296	0.3745	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.79	1	0.4041	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TC	7	22	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0.2168	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1395_LUNG	1	1	0.2858	FALSE	462	80	0	856	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	6	25	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0.2464	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	1	1	0.3055	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	5	29	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0.2858	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	1	1	0.3351	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	12	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1183	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	1	1	0.1183	FALSE	344	821	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	35	MT-ND4	1303	chrM:11062:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	97	0	0.28	1	0.0296	0.345	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.28	1	0.3746	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	35	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	35	0	0.52	1	0.0296	0.345	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.52	1	0.3746	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	8	15	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	84	0	0.21	1	0.0788	0.1478	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.21	1	0.2266	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	10	3	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	8	0	0.62	1	0.0986	0.0296	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.62	1	0.1282	FALSE	344	821	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	RP5-857K21.11--MTATP6P1	10	2	RP5-857K21.11	1220	chr1:569975:+	MTATP6P1	4835	chr1:569363:+	INCL_NON_REF_SPLICE	YES	4	82	0.75	0.13	0.0986	0.0197	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1395_LUNG	0.13	0.75	0.1183	TRUE	16	42	4	10	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	6	17	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0591	0.1675	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	0.96	1	0.2266	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TN	10	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0986	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1395_LUNG	1	1	0.0986	FALSE	369	2501	205	193	0	FALSE	ACH-000327
NCIH1395_LUNG	WNT11--PCF11	9	4	WNT11	3021	chr11:75917369:-	PCF11	28684	chr11:82895721:+	ONLY_REF_SPLICE	YES	21	39	0.38	0.25	0.0887	0.0394	WNT11->Wnt_family_member_11,chr11:75897369-75921780:-,PCF11->PCF11_cleavage_and_polyadenylation_factor_subunit,chr11:82868030-82898493:+	NCIH1395_LUNG	0.25	0.38	0.1281	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	6	15	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	47	0	0.31	1	0.0591	0.1478	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.31	1	0.2069	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	26	MT-ND4	1051	chrM:10810:+	MT-ND4L	5622	chrM:10713:+	INCL_NON_REF_SPLICE	YES	5	1	0.85	0.97	0.0296	0.2562	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.85	0.97	0.2858	FALSE	344	821	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TC	5	18	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0.1774	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1395_LUNG	1	1	0.2267	FALSE	462	80	0	856	0	FALSE	ACH-000327
NCIH1395_LUNG	AEBP2--RP11-405A12.2	9	0	AEBP2	15624	chr12:19873625:+	RP11-405A12.2	19888	chr12:20076132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0887	0	NEIGHBORS[54650],AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,RP11-405A12.2->chr12:19928385-20162871:+	NCIH1395_LUNG	1	1	0.0887	FALSE	0	0	0	8	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	4	20	MT-ND6	1033	chrM:14641:-	MT-TE	4499	chrM:14769:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.1971	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	1	1	0.2365	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TY	8	4	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0788	0.0394	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1395_LUNG	1	1	0.1182	FALSE	13	214	14	42	0	FALSE	ACH-000327
NCIH1395_LUNG	PVT1--SNRPB2	3	24	PVT1	1202	chr8:128806980:+	SNRPB2	34170	chr20:16721491:+	ONLY_REF_SPLICE	YES	337	71	0.07	0.28	0.0296	0.2365	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,SNRPB2->chr20:16710606-16722421:+,small_nuclear_ribonucleoprotein_polypeptide_B2	NCIH1395_LUNG	0.07	0.28	0.2661	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	8	3	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	5	1	0.69	0.92	0.0788	0.0296	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.69	0.92	0.1084	FALSE	344	821	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	FAM168A--C11orf30	8	2	FAM168A	6116	chr11:73130919:-	C11orf30	33893	chr11:76224430:+	ONLY_REF_SPLICE	YES	9	26	0.53	0.28	0.0788	0.0197	{Klijn_CCL:Lung=1},FAM168A->chr11:73111532-73309234:-,family_with_sequence_similarity_168_member_A,C11orf30->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:76155967-76264069:+	NCIH1395_LUNG	0.28	0.53	0.0985	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	8	1	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	6	0	0.6	1	0.0788	0.0099	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.6	1	0.0887	FALSE	344	821	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TY	8	1	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0788	0.0099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1395_LUNG	1	1	0.0887	FALSE	13	214	14	42	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TY	7	5	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0.0493	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1395_LUNG	1	1	0.1183	FALSE	13	214	14	42	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TC	3	20	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0.1971	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1395_LUNG	1	1	0.2267	FALSE	462	80	0	856	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TC--MT-TY	8	0	MT-TC	1062	chrM:5765:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0788	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1395_LUNG	1	1	0.0788	FALSE	51	280	19	36	0	FALSE	ACH-000327
NCIH1395_LUNG	RP5-857K21.11--MTATP6P1	8	0	RP5-857K21.11	1028	chr1:569783:+	MTATP6P1	5197	chr1:569725:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0788	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1395_LUNG	1	1	0.0788	TRUE	16	42	4	10	0	FALSE	ACH-000327
NCIH1395_LUNG	RP5-857K21.11--MTATP6P1	8	0	RP5-857K21.11	1020	chr1:569775:+	MTATP6P1	4744	chr1:569272:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0788	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	NCIH1395_LUNG	1	1	0.0788	TRUE	16	42	4	10	0	FALSE	ACH-000327
NCIH1395_LUNG	EFCAB4B--PARP11	7	3	EFCAB4B	2441	chr12:3862181:-	PARP11	39846	chr12:3939184:-	ONLY_REF_SPLICE	YES	11	5	0.48	0.67	0.069	0.0296	LOCAL_REARRANGEMENT:-:[26228],EFCAB4B->chr12:3715799-3873985:-,PARP11->chr12:3900213-3982608:-,poly(ADP-ribose)_polymerase_family_member_11	NCIH1395_LUNG	0.48	0.67	0.0986	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	4	15	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	84	0	0.18	1	0.0394	0.1478	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.18	1	0.1872	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	4	15	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	38	0	0.33	1	0.0394	0.1478	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.33	1	0.1872	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	7	2	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0.0197	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	1	1	0.0887	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	7	2	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0.0197	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	1	1	0.0887	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	RP11-96H19.1--RP11-446N19.1	3	18	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	5	0	0.81	1	0.0296	0.1774	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1395_LUNG	0.81	1	0.207	FALSE	407	2205	196	549	0	FALSE	ACH-000327
NCIH1395_LUNG	RP11-96H19.1--RP11-446N19.1	3	18	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0296	0.1774	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1395_LUNG	1	1	0.207	FALSE	467	2173	244	435	0	FALSE	ACH-000327
NCIH1395_LUNG	EFCAB4B--PARP11	6	5	EFCAB4B	2441	chr12:3862181:-	PARP11	38724	chr12:3973123:-	ONLY_REF_SPLICE	YES	11	3	0.5	0.79	0.0591	0.0493	LOCAL_REARRANGEMENT:-:[26228],EFCAB4B->chr12:3715799-3873985:-,PARP11->chr12:3900213-3982608:-,poly(ADP-ribose)_polymerase_family_member_11	NCIH1395_LUNG	0.5	0.79	0.1084	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	APP--MT-CO3	5	8	APP	11644	chr21:27394205:-	MT-CO3	32381	chrM:9412:+	INCL_NON_REF_SPLICE	YES	1108	14744	0.01	0	0.0493	0.0788	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH1395_LUNG	0	0.01	0.1281	FALSE	0	0	0	26	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	7	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	1	1	0.069	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.069	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH1395_LUNG	1	1	0.069	FALSE	292	1546	117	613	0	FALSE	ACH-000327
NCIH1395_LUNG	TENM4--PC	6	4	TENM4	1440	chr11:79151553:-	PC	67692	chr11:66639630:-	ONLY_REF_SPLICE	YES	0	5	1	0.67	0.0591	0.0394	TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4,PC->chr11:66615704-66725847:-,pyruvate_carboxylase	NCIH1395_LUNG	0.67	1	0.0985	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	15	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	45	0	0.29	1	0.0296	0.1478	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.29	1	0.1774	FALSE	344	827	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	RP11-96H19.1--RP11-446N19.1	2	19	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0.1873	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1395_LUNG	1	1	0.207	FALSE	192	492	57	212	0	FALSE	ACH-000327
NCIH1395_LUNG	HERC1--MAP2K1	6	2	HERC1	6143	chr15:64056295:-	MAP2K1	94936	chr15:66774093:+	ONLY_REF_SPLICE	YES	5	175	0.62	0.04	0.0591	0.0197	GTEx&tcga_normals:1/3694=0.03%,HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,MAP2K1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr15:66679155-66784650:+,mitogen-activated_protein_kinase_kinase_1	NCIH1395_LUNG	0.04	0.62	0.0788	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-CO2--MT-ND2	6	2	MT-CO2	1301	chrM:7886:+	MT-ND2	5531	chrM:5316:+	INCL_NON_REF_SPLICE	YES	19332	289	0	0.03	0.0591	0.0197	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1395_LUNG	0	0.03	0.0788	FALSE	105	46	5	21	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-CO2--MT-ND2	6	2	MT-CO2	1286	chrM:7871:+	MT-ND2	5166	chrM:4951:+	INCL_NON_REF_SPLICE	YES	19629	9385	0	0	0.0591	0.0197	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1395_LUNG	0	0	0.0788	FALSE	105	46	5	21	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TC	4	10	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.0986	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1395_LUNG	1	1	0.138	FALSE	462	80	0	856	0	FALSE	ACH-000327
NCIH1395_LUNG	RP4-565E6.1--HYDIN	6	2	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	3	1	0.73	0.0591	0.0197	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1395_LUNG	0.73	1	0.0788	TRUE	456	1387	91	133	0	FALSE	ACH-000327
NCIH1395_LUNG	EMR2--GRM5	6	1	EMR2	5334	chr19:14883154:-	GRM5	37574	chr11:88386571:-	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0591	0.0099	EMR2->chr19:14843205-14889353:-,GRM5->chr11:88237744-88799113:-,glutamate_metabotropic_receptor_5	NCIH1395_LUNG	0.88	1	0.069	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	3	13	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	11	0	0.59	1	0.0296	0.1281	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	0.59	1	0.1577	FALSE	344	826	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	COX5A--PARP16	2	16	COX5A	1254	chr15:75230256:-	PARP16	21901	chr15:65527161:-	ONLY_REF_SPLICE	YES	1061	0	0.02	1	0.0197	0.1577	COX5A->chr15:75212132-75230509:-,cytochrome_c_oxidase_subunit_5A,PARP16->chr15:65526798-65592956:-,poly(ADP-ribose)_polymerase_family_member_16	NCIH1395_LUNG	0.02	1	0.1774	TRUE	0	0	0	1	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND4--MT-ND4L	6	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1395_LUNG	1	1	0.0591	FALSE	344	821	44	306	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TN	6	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0591	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1395_LUNG	1	1	0.0591	FALSE	369	2501	205	193	0	FALSE	ACH-000327
NCIH1395_LUNG	WDR72--CLPX	6	0	WDR72	18976	chr15:53957769:-	CLPX	38744	chr15:65459123:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0591	0	WDR72->WD_repeat_domain_72,chr15:53805938-54055075:-,CLPX->caseinolytic_mitochondrial_matrix_peptidase_chaperone_subunit,chr15:65440557-65477680:-	NCIH1395_LUNG	1	1	0.0591	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	APP--MT-CO3	3	10	APP	11652	chr21:27394197:-	MT-CO3	32390	chrM:9421:+	INCL_NON_REF_SPLICE	YES	1286	14882	0.01	0	0.0296	0.0986	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH1395_LUNG	0	0.01	0.1282	FALSE	0	0	0	26	0	FALSE	ACH-000327
NCIH1395_LUNG	RNF152--RP11-879F14.1	5	2	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	6	0	0.54	1	0.0493	0.0197	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	NCIH1395_LUNG	0.54	1	0.069	FALSE	275	472	65	43	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-CO2--MT-ND2	5	1	MT-CO2	1276	chrM:7861:+	MT-ND2	5541	chrM:5326:+	INCL_NON_REF_SPLICE	YES	18691	249	0	0.02	0.0493	0.0099	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1395_LUNG	0	0.02	0.0592	FALSE	105	46	5	21	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--UBB	5	0	MT-ND6	1145	chrM:14529:-	UBB	4849	chr17:16284435:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0493	0	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,UBB->chr17:16284112-16286059:+,ubiquitin_B	NCIH1395_LUNG	1	1	0.0493	FALSE	0	18	0	1	0	FALSE	ACH-000327
NCIH1395_LUNG	PC--KCNE3	5	0	PC	3864	chr11:66719901:-	KCNE3	24767	chr11:74175370:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0493	0	PC->chr11:66615704-66725847:-,pyruvate_carboxylase,KCNE3->chr11:74165886-74178774:-,potassium_voltage-gated_channel_subfamily_E_regulatory_subunit_3	NCIH1395_LUNG	1	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TY	4	3	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.0296	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1395_LUNG	1	1	0.069	FALSE	13	214	14	42	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-CO2--MT-ND2	4	2	MT-CO2	1274	chrM:7859:+	MT-ND2	5117	chrM:4902:+	INCL_NON_REF_SPLICE	YES	18685	12326	0	0	0.0394	0.0197	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1395_LUNG	0	0	0.0591	FALSE	105	46	5	21	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-CO2--MT-ND2	4	1	MT-CO2	1234	chrM:7819:+	MT-ND2	5523	chrM:5308:+	INCL_NON_REF_SPLICE	YES	16908	338	0	0.01	0.0394	0.0099	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1395_LUNG	0	0.01	0.0493	FALSE	105	46	5	21	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-CO2--MT-ND2	3	5	MT-CO2	1302	chrM:7887:+	MT-ND2	5239	chrM:5024:+	INCL_NON_REF_SPLICE	YES	19333	5121	0	0	0.0296	0.0493	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1395_LUNG	0	0	0.0789	FALSE	105	46	5	21	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	4	1	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0.0099	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	1	1	0.0493	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	HSPA12B--PHF14	4	0	HSPA12B	10232	chr20:3731554:+	PHF14	39952	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0394	0	HSPA12B->chr20:3713314-3733758:+,heat_shock_protein_family_A_(Hsp70)_member_12B,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1395_LUNG	1	1	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	MT-CO2--MT-ND2	3	4	MT-CO2	1350	chrM:7935:+	MT-ND2	5542	chrM:5327:+	INCL_NON_REF_SPLICE	NO	19604	251	0	0.03	0.0296	0.0394	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1395_LUNG	0	0.03	0.069	FALSE	105	46	5	21	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND3--MT-ATP8	4	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1395_LUNG	1	1	0.0394	FALSE	351	233	23	137	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TY	3	4	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0.0394	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1395_LUNG	1	1	0.069	FALSE	13	214	14	42	0	FALSE	ACH-000327
NCIH1395_LUNG	PDCD7--RP11-299H22.1	3	3	PDCD7	3064	chr15:65421370:-	RP11-299H22.1	13558	chr15:62488961:-	ONLY_REF_SPLICE	YES	35	0	0.15	1	0.0296	0.0296	PDCD7->chr15:65409717-65426174:-,programmed_cell_death_7,RP11-299H22.1->chr15:62488344-62495517:-	NCIH1395_LUNG	0.15	1	0.0592	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	ANAPC15--LPXN	3	1	ANAPC15	3693	chr11:71821134:-	LPXN	14756	chr11:58322413:-	ONLY_REF_SPLICE	YES	194	11	0.02	0.27	0.0296	0.0099	ANAPC15->anaphase_promoting_complex_subunit_15,chr11:71817424-71823826:-,LPXN->chr11:58294344-58345693:-,leupaxin	NCIH1395_LUNG	0.02	0.27	0.0395	TRUE	0	0	0	1	0	FALSE	ACH-000327
NCIH1395_LUNG	GPC5--GPC5-IT1	3	1	GPC5	10063	chr13:92797242:+	GPC5-IT1	16096	chr13:93161766:+	ONLY_REF_SPLICE	YES	43	0	0.09	1	0.0296	0.0099	NEIGHBORS_OVERLAP:+:+:[25488],GPC5->Oncogene{Bushman},chr13:92050929-93519490:+,glypican_5,GPC5-IT1->GPC5_intronic_transcript_1,chr13:93136859-93162347:+	NCIH1395_LUNG	0.09	1	0.0395	FALSE	21	23	3	6	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-CO2--MT-ND2	3	1	MT-CO2	1249	chrM:7834:+	MT-ND2	5552	chrM:5337:+	INCL_NON_REF_SPLICE	YES	18041	226	0	0.02	0.0296	0.0099	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCIH1395_LUNG	0	0.02	0.0395	FALSE	105	46	5	21	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND3--MT-ATP8	3	1	MT-ND3	1290	chrM:10348:+	MT-ATP8	4418	chrM:8437:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0.0099	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1395_LUNG	1	1	0.0395	FALSE	351	233	23	137	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND3--MT-ATP8	3	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4444	chrM:8463:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH1395_LUNG	1	1	0.0296	FALSE	351	233	23	137	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1002	chrM:14672:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH1395_LUNG	1	1	0.0296	FALSE	499	1288	110	792	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TA--MT-TN	3	0	MT-TA	1023	chrM:5633:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH1395_LUNG	1	1	0.0296	FALSE	369	2501	205	193	0	FALSE	ACH-000327
NCIH1395_LUNG	MT-TC--MT-TY	3	0	MT-TC	1071	chrM:5756:-	MT-TY	4119	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH1395_LUNG	1	1	0.0296	FALSE	51	280	19	36	0	FALSE	ACH-000327
NCIH1395_LUNG	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0296	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	NCIH1395_LUNG	1	1	0.0296	TRUE	22	156	2	142	0	FALSE	ACH-000327
NCIH1395_LUNG	RNF152--RP11-879F14.1	2	2	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	NO	6	0	0.4	1	0.0197	0.0197	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	NCIH1395_LUNG	0.4	1	0.0394	FALSE	119	124	24	18	0	FALSE	ACH-000327
NCIH1395_LUNG	RP11-123O10.4--GRIP1	2	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0.0197	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1395_LUNG	1	1	0.0394	FALSE	93	270	15	244	0	FALSE	ACH-000327
NCIH1395_LUNG	NBR2--ALDH3A2	2	1	NBR2	1161	chr17:41277787:+	ALDH3A2	18743	chr17:19559679:+	ONLY_REF_SPLICE	YES	6	151	0.33	0.02	0.0197	0.0099	NBR2->chr17:41277627-41305688:+,neighbor_of_BRCA1_gene_2_(non-protein_coding),ALDH3A2->aldehyde_dehydrogenase_3_family_member_A2,chr17:19551449-19580911:+	NCIH1395_LUNG	0.02	0.33	0.0296	TRUE	0	2	0	4	0	FALSE	ACH-000327
NCIH1395_LUNG	CDC27--LRPPRC	2	0	CDC27	5307	chr17:45247283:-	LRPPRC	63794	chr2:44117015:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	CDC27->Oncogene{Bushman},cell_division_cycle_27,chr17:45195069-45266788:-,LRPPRC->chr2:44113647-44223144:-,leucine_rich_pentatricopeptide_repeat_containing	NCIH1395_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	LETMD1--ST3GAL1	2	0	LETMD1	2224	chr12:51442968:+	ST3GAL1	24463	chr8:134488843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	LETMD1->LETM1_domain_containing_1,chr12:51441745-51454207:+,ST3GAL1->ST3_beta-galactoside_alpha-2,3-sialyltransferase_1,chr8:134467091-134584183:-	NCIH1395_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	NBAS--FAM49A	2	0	NBAS	5992	chr2:15691617:-	FAM49A	68667	chr2:16747035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	NCIH1395_LUNG	1	1	0.0197	TRUE	0	0	0	5	0	TRUE	ACH-000327
NCIH1395_LUNG	OSBPL2--DHCR7	2	0	OSBPL2	2239	chr20:60831277:+	DHCR7	24357	chr11:71158780:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2,DHCR7->7-dehydrocholesterol_reductase,chr11:71139239-71163914:-	NCIH1395_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	PC--KCNE3	2	0	PC	3864	chr11:66719901:-	KCNE3	26583	chr11:74173148:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	PC->chr11:66615704-66725847:-,pyruvate_carboxylase,KCNE3->chr11:74165886-74178774:-,potassium_voltage-gated_channel_subfamily_E_regulatory_subunit_3	NCIH1395_LUNG	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	TENM4--PC	1	4	TENM4	2679	chr11:79150006:-	PC	67692	chr11:66639630:-	ONLY_REF_SPLICE	YES	0	5	1	0.5	0.0099	0.0394	TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4,PC->chr11:66615704-66725847:-,pyruvate_carboxylase	NCIH1395_LUNG	0.5	1	0.0493	TRUE	0	0	0	1	0	TRUE	ACH-000327
NCIH1395_LUNG	DAP--CTNND2	1	1	DAP	2356	chr5:10748287:-	CTNND2	23166	chr5:11365002:-	ONLY_REF_SPLICE	YES	317	94	0.01	0.02	0.0099	0.0099	DAP->chr5:10679342-10761384:-,death-associated_protein,CTNND2->Oncogene{Bushman},catenin_delta_2,chr5:10971952-11904155:-	NCIH1395_LUNG	0.01	0.02	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000327
NCIH1395_LUNG	ETFA--CPS1	1	1	ETFA	10669	chr15:76566753:-	CPS1	25728	chr2:211421443:+	ONLY_REF_SPLICE	YES	728	449	0	0	0.0099	0.0099	ETFA->chr15:76507696-76603813:-,electron_transfer_flavoprotein_alpha_subunit,CPS1->carbamoyl-phosphate_synthase_1,chr2:211342406-211543831:+	NCIH1395_LUNG	0	0	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000327
NCIH1395_LUNG	EXOC4--CHCHD3	1	1	EXOC4	4331	chr7:132973870:+	CHCHD3	52741	chr7:132523229:-	ONLY_REF_SPLICE	YES	73	219	0.03	0.01	0.0099	0.0099	GTEx_v2:{count=5;pct=0.06%;dist=Lung=1,Artery_-_Aorta=1,Thyroid=1,Adipose_-_Visceral_(Omentum)=1,Spleen=1},EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4,CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3	NCIH1395_LUNG	0.01	0.03	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000327
NCIH1395_LUNG	HSPA12B--UBAP2L	1	1	HSPA12B	10232	chr20:3731554:+	UBAP2L	17657	chr1:154197560:+	ONLY_REF_SPLICE	YES	151	15	0.01	0.12	0.0099	0.0099	HSPA12B->chr20:3713314-3733758:+,heat_shock_protein_family_A_(Hsp70)_member_12B,UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like	NCIH1395_LUNG	0.01	0.12	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000327
NCIH1395_LUNG	HYOU1--RPS21	1	1	HYOU1	11443	chr11:118917274:-	RPS21	17023	chr20:60962377:+	ONLY_REF_SPLICE	YES	426	86	0	0.02	0.0099	0.0099	HYOU1->chr11:118914900-118927913:-,hypoxia_up-regulated_1,RPS21->chr20:60962172-60963576:+,ribosomal_protein_S21	NCIH1395_LUNG	0	0.02	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000327
NCIH1395_LUNG	RHOBTB3--SELENBP1	1	1	RHOBTB3	2421	chr5:95053469:+	SELENBP1	29340	chr1:151340795:-	ONLY_REF_SPLICE	YES	8	401	0.2	0	0.0099	0.0099	RHOBTB3->Rho_related_BTB_domain_containing_3,chr5:95049226-95160087:+,SELENBP1->chr1:151336778-151345209:-,selenium_binding_protein_1	NCIH1395_LUNG	0	0.2	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000327
NCIH1395_LUNG	RP4-565E6.1--HYDIN	1	1	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	NO	0	3	1	0.4	0.0099	0.0099	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCIH1395_LUNG	0.4	1	0.0198	TRUE	84	87	4	41	0	FALSE	ACH-000327
NCIH1395_LUNG	WDR37--IDI1	1	1	WDR37	14623	chr10:1151207:+	IDI1	25834	chr10:1090111:-	ONLY_REF_SPLICE	YES	22	41	0.08	0.05	0.0099	0.0099	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:+:-:[368],WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+,IDI1->chr10:1085848-1095110:-,isopentenyl-diphosphate_delta_isomerase_1	NCIH1395_LUNG	0.05	0.08	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000327
SJSA1_BONE	HMGA2--LUM	5481	3219	HMGA2	5315	chr12:66232349:+	LUM	30462	chr12:91498096:-	ONLY_REF_SPLICE	YES	8	597	1	0.94	69.1341	40.6025	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,LUM->chr12:91496406-91505608:-,lumican	SJSA1_BONE	0.94	1	109.7366	TRUE	0	0	0	8	0	TRUE	ACH-000748
SJSA1_BONE	HMGA2--LUM	14	3219	HMGA2	5315	chr12:66232349:+	LUM	30464	chr12:91498094:-	INCL_NON_REF_SPLICE	YES	8	543	1	0.86	0.1766	40.6025	HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2,LUM->chr12:91496406-91505608:-,lumican	SJSA1_BONE	0.86	1	40.7791	TRUE	0	0	0	8	0	TRUE	ACH-000748
SJSA1_BONE	KIF5A--STK24	124	42	KIF5A	1403	chr12:57944183:+	STK24	35329	chr13:99116090:-	ONLY_REF_SPLICE	YES	6	217	0.97	0.43	1.5641	0.5298	KIF5A->chr12:57943781-57980415:+,kinesin_family_member_5A,STK24->chr13:99102455-99230194:-,serine/threonine_kinase_24	SJSA1_BONE	0.43	0.97	2.0939	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	TIMM23B--LINC00843	86	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0848	0.2397	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SJSA1_BONE	1	1	1.3245	TRUE	508	994	45	981	0	FALSE	ACH-000748
SJSA1_BONE	TIMM23--RP11-592B15.3	79	14	TIMM23	6952	chr10:51606988:-	RP11-592B15.3	21430	chr10:51262177:-	ONLY_REF_SPLICE	YES	169	22	0.35	0.81	0.9965	0.1766	GTEx_FI:{Stomach=[count:2=pct:2.2],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Nerve=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Breast=[count:1=pct:0.9],Muscle=[count:1=pct:0.4]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-592B15.3->chr10:51253146-51371338:-	SJSA1_BONE	0.35	0.81	1.1731	TRUE	8	39	3	4	0	FALSE	ACH-000748
SJSA1_BONE	RBM19--RP11-689B22.2	59	21	RBM19	21862	chr12:114352774:-	RP11-689B22.2	34513	chr12:109030171:+	ONLY_REF_SPLICE	YES	39	0	0.67	1	0.7442	0.2649	RBM19->RNA_binding_motif_protein_19,chr12:114254543-114404176:-,RP11-689B22.2->chr12:109022463-109035094:+	SJSA1_BONE	0.67	1	1.0091	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	UBAC2--TMCO3	45	47	UBAC2	13004	chr13:99992819:+	TMCO3	35656	chr13:114202641:+	INCL_NON_REF_SPLICE	YES	237	155	0.28	0.37	0.5676	0.5928	UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	SJSA1_BONE	0.28	0.37	1.1604	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	R3HDM2--IPO5	49	15	R3HDM2	2356	chr12:57789532:-	IPO5	36440	chr13:98621977:+	ONLY_REF_SPLICE	YES	7	1	0.9	0.98	0.6181	0.1892	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,IPO5->chr13:98605912-98676551:+,importin_5	SJSA1_BONE	0.9	0.98	0.8073	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	ARHGEF7--CPM	42	20	ARHGEF7	2133	chr13:111768038:+	CPM	49167	chr12:69264179:-	ONLY_REF_SPLICE	YES	0	45	1	0.58	0.5298	0.2523	ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,CPM->carboxypeptidase_M,chr12:69235977-69365350:-	SJSA1_BONE	0.58	1	0.7821	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	IRS2--KRT76	40	10	IRS2	5527	chr13:110434389:-	KRT76	13654	chr12:53169386:-	ONLY_REF_SPLICE	YES	32	0	0.61	1	0.5045	0.1261	IRS2->ArcherDX_panel,FoundationOne_panel,chr13:110406184-110438915:-,insulin_receptor_substrate_2,KRT76->chr12:53161939-53171129:-,keratin_76	SJSA1_BONE	0.61	1	0.6306	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	KCTD10--LINC00331	33	0	KCTD10	1285	chr12:109915065:-	LINC00331	20777	chr13:79361614:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4162	0	KCTD10->chr12:109886461-109915349:-,potassium_channel_tetramerization_domain_containing_10,LINC00331->chr13:79361454-79366442:-,long_intergenic_non-protein_coding_RNA_331	SJSA1_BONE	1	1	0.4162	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	OR51S1--TP53I11	30	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3784	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SJSA1_BONE	1	1	0.3784	TRUE	402	216	10	229	0	FALSE	ACH-000748
SJSA1_BONE	RP11-680G10.1--GSE1	28	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.92	0.3532	0.0757	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SJSA1_BONE	0.92	1	0.4289	TRUE	458	1351	185	561	0	FALSE	ACH-000748
SJSA1_BONE	RPSAP52--HMGA2	28	2	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	5	1496	0.86	0.02	0.3532	0.0252	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SJSA1_BONE	0.02	0.86	0.3784	FALSE	0	59	0	125	0	FALSE	ACH-000748
SJSA1_BONE	COL1A1--COL6A2	27	0	COL1A1	5797	chr17:48273978:-	COL6A2	36137	chr21:47544799:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3406	0	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	SJSA1_BONE	1	1	0.3406	TRUE	0	0	0	6	0	TRUE	ACH-000748
SJSA1_BONE	UBAC2--TMCO3	19	31	UBAC2	13004	chr13:99992819:+	TMCO3	36755	chr13:114203740:+	ONLY_REF_SPLICE	YES	237	210	0.17	0.19	0.2397	0.391	UBAC2->UBA_domain_containing_2,chr13:99853028-100038688:+,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	SJSA1_BONE	0.17	0.19	0.6307	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	RP11-680G10.1--GSE1	20	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	19	1	0.55	0.2523	0.0378	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SJSA1_BONE	0.55	1	0.2901	TRUE	465	1949	224	605	0	FALSE	ACH-000748
SJSA1_BONE	R3HDM2--KRT76	16	5	R3HDM2	2356	chr12:57789532:-	KRT76	34218	chr12:53169386:-	ONLY_REF_SPLICE	YES	7	0	0.75	1	0.2018	0.0631	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,KRT76->chr12:53161939-53171129:-,keratin_76	SJSA1_BONE	0.75	1	0.2649	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	ARHGEF7--CPM	14	11	ARHGEF7	2133	chr13:111768038:+	CPM	50071	chr12:69263275:-	ONLY_REF_SPLICE	YES	0	84	1	0.23	0.1766	0.1387	ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,CPM->carboxypeptidase_M,chr12:69235977-69365350:-	SJSA1_BONE	0.23	1	0.3153	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	COL1A1--NPM1	15	6	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	6112	0	0	1	0.1892	0.0757	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	SJSA1_BONE	0	1	0.2649	TRUE	0	0	0	31	0	FALSE	ACH-000748
SJSA1_BONE	R3HDM2--RP11-383H17.4	15	0	R3HDM2	2356	chr12:57789532:-	RP11-383H17.4	33673	chr13:98605744:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1892	0	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,RP11-383H17.4->chr13:98591610-98605793:+	SJSA1_BONE	1	1	0.1892	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	RBM19--RP11-689B22.2	9	24	RBM19	21862	chr12:114352774:-	RP11-689B22.2	32875	chr12:109028107:+	ONLY_REF_SPLICE	YES	39	0	0.46	1	0.1135	0.3027	RBM19->RNA_binding_motif_protein_19,chr12:114254543-114404176:-,RP11-689B22.2->chr12:109022463-109035094:+	SJSA1_BONE	0.46	1	0.4162	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	R3HDM2--IPO5	11	15	R3HDM2	2356	chr12:57789532:-	IPO5	33025	chr13:98606373:+	ONLY_REF_SPLICE	YES	7	1	0.79	0.96	0.1387	0.1892	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,IPO5->chr13:98605912-98676551:+,importin_5	SJSA1_BONE	0.79	0.96	0.3279	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	TUBGCP3--SPRY2	13	7	TUBGCP3	1263	chr13:113242219:-	SPRY2	32597	chr13:80911891:-	ONLY_REF_SPLICE	YES	49	66	0.29	0.23	0.164	0.0883	TUBGCP3->chr13:113139325-113242481:-,tubulin_gamma_complex_associated_protein_3,SPRY2->chr13:80910111-80915086:-,sprouty_RTK_signaling_antagonist_2	SJSA1_BONE	0.23	0.29	0.2523	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	KCTD10--LINC00331	13	1	KCTD10	1285	chr12:109915065:-	LINC00331	19709	chr13:79363719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.164	0.0126	KCTD10->chr12:109886461-109915349:-,potassium_channel_tetramerization_domain_containing_10,LINC00331->chr13:79361454-79366442:-,long_intergenic_non-protein_coding_RNA_331	SJSA1_BONE	1	1	0.1766	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	MT-ND6--MT-TE	13	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.164	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SJSA1_BONE	1	1	0.164	FALSE	499	1288	110	792	0	FALSE	ACH-000748
SJSA1_BONE	TAF7L--OS9	13	0	TAF7L	11027	chrX:100531410:-	OS9	22733	chr12:58111715:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.164	0	TAF7L->TATA-box_binding_protein_associated_factor_7_like,chrX:100523241-100548059:-,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	SJSA1_BONE	1	1	0.164	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	TAF7L--OS9	9	0	TAF7L	11032	chrX:100531405:-	OS9	23033	chr12:58112015:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1135	0	TAF7L->TATA-box_binding_protein_associated_factor_7_like,chrX:100523241-100548059:-,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	SJSA1_BONE	1	1	0.1135	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	RP11-444D3.1--SOX5	8	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1009	0.0126	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SJSA1_BONE	1	1	0.1135	TRUE	477	1352	189	275	0	FALSE	ACH-000748
SJSA1_BONE	PFKM--MT-ND4L	7	1	PFKM	16513	chr12:48531603:+	MT-ND4L	27661	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1397	0	0.01	1	0.0883	0.0126	PFKM->chr12:48498922-48540187:+,phosphofructokinase,_muscle,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SJSA1_BONE	0.01	1	0.1009	FALSE	0	0	0	8	0	FALSE	ACH-000748
SJSA1_BONE	RP11-123O10.4--GRIP1	7	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0883	0.0126	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SJSA1_BONE	1	1	0.1009	FALSE	416	2512	207	587	0	FALSE	ACH-000748
SJSA1_BONE	RP4-565E6.1--HYDIN	6	5	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0757	0.0631	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SJSA1_BONE	1	1	0.1388	TRUE	456	1387	91	133	0	FALSE	ACH-000748
SJSA1_BONE	MT-ND6--MT-TE	7	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0883	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SJSA1_BONE	1	1	0.0883	FALSE	499	1288	110	792	0	FALSE	ACH-000748
SJSA1_BONE	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0883	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SJSA1_BONE	1	1	0.0883	FALSE	292	1546	117	613	0	FALSE	ACH-000748
SJSA1_BONE	MT-ND6--MT-TE	6	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0757	0.0378	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SJSA1_BONE	0.9	1	0.1135	FALSE	499	1288	110	792	0	FALSE	ACH-000748
SJSA1_BONE	R3HDM2--IPO5	4	11	R3HDM2	2356	chr12:57789532:-	IPO5	36443	chr13:98621980:+	INCL_NON_REF_SPLICE	YES	7	1	0.68	0.94	0.0505	0.1387	R3HDM2->R3H_domain_containing_2,chr12:57643392-57824788:-,IPO5->chr13:98605912-98676551:+,importin_5	SJSA1_BONE	0.68	0.94	0.1892	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	ANXA5--TRPC3	5	1	ANXA5	4827	chr4:122604519:-	TRPC3	23782	chr4:122833248:-	ONLY_REF_SPLICE	YES	1764	1	0	0.86	0.0631	0.0126	ANXA5->annexin_A5,chr4:122589110-122618268:-,TRPC3->chr4:122800182-122872909:-,transient_receptor_potential_cation_channel_subfamily_C_member_3	SJSA1_BONE	0	0.86	0.0757	FALSE	0	0	0	1	0	FALSE	ACH-000748
SJSA1_BONE	PRR16--CTD-2334D19.1	4	0	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0505	0	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SJSA1_BONE	1	1	0.0505	FALSE	56	216	12	147	0	FALSE	ACH-000748
SJSA1_BONE	SNX32--ARPC2	4	0	SNX32	8951	chr11:65623697:+	ARPC2	24433	chr2:219110166:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0505	0	SNX32->chr11:65601112-65624367:+,sorting_nexin_32,ARPC2->actin_related_protein_2/3_complex_subunit_2,chr2:219081817-219119079:+	SJSA1_BONE	1	1	0.0505	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	CD248--KRT17	3	2	CD248	2788	chr11:66082728:-	KRT17	6888	chr17:39780765:-	INCL_NON_REF_SPLICE	YES	3658	15	0	0.25	0.0378	0.0252	CD248->CD248_molecule,Oncogene{Bushman},chr11:66081958-66084515:-,KRT17->chr17:39775689-39781094:-,keratin_17	SJSA1_BONE	0	0.25	0.063	FALSE	0	0	0	1	0	FALSE	ACH-000748
SJSA1_BONE	CTD-2337A12.1--CAST	3	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	61	1	0.06	0.0378	0.0126	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SJSA1_BONE	0.06	1	0.0504	TRUE	347	1186	183	220	0	FALSE	ACH-000748
SJSA1_BONE	SH3TC1--PDE1C	3	1	SH3TC1	20030	chr4:8230371:+	PDE1C	40573	chr7:31920473:-	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.0378	0.0126	SH3TC1->SH3_domain_and_tetratricopeptide_repeats_1,chr4:8183799-8243530:+,PDE1C->chr7:31790793-32338941:-,phosphodiesterase_1C	SJSA1_BONE	0.8	1	0.0504	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	ENO1--ACTG1	3	0	ENO1	13070	chr1:8921342:-	ACTG1	19582	chr17:79478970:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0378	0	GTEx&tcga_normals:2/3694=0.05%,ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SJSA1_BONE	1	1	0.0378	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	NCOR2--UBC	3	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0378	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SJSA1_BONE	1	1	0.0378	TRUE	145	312	16	51	0	FALSE	ACH-000748
SJSA1_BONE	RBM19--RP11-689B22.2	1	7	RBM19	21862	chr12:114352774:-	RP11-689B22.2	35574	chr12:109034650:+	ONLY_REF_SPLICE	YES	39	0	0.17	1	0.0126	0.0883	RBM19->RNA_binding_motif_protein_19,chr12:114254543-114404176:-,RP11-689B22.2->chr12:109022463-109035094:+	SJSA1_BONE	0.17	1	0.1009	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	ABI1--ITGB1	2	0	ABI1	3560	chr10:27112067:-	ITGB1	47960	chr10:33190563:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	GTEx_v2:{count=1;pct=0.01%;dist=Adipose_-_Subcutaneous=1},ABI1->Oncogene{Bushman},abl_interactor_1,chr10:27035522-27150016:-,ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1	SJSA1_BONE	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	CDH13--RP11-22H5.2	2	0	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	SJSA1_BONE	1	1	0.0252	FALSE	14	31	0	36	0	FALSE	ACH-000748
SJSA1_BONE	MINOS1--CAPZB	2	0	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	SJSA1_BONE	1	1	0.0252	TRUE	2	7	0	21	0	FALSE	ACH-000748
SJSA1_BONE	RP11-66B24.2--SEPT10	2	0	RP11-66B24.2	1772	chr15:101390537:+	SEPT10	13578	chr2:110350696:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	GTEx_FI:{Esophagus=[count:2=pct:0.5]},RP11-66B24.2->chr15:101389766-101402376:+,SEPT10->chr2:110300559-110371783:-,septin_10	SJSA1_BONE	1	1	0.0252	TRUE	2	0	2	2	0	FALSE	ACH-000748
SJSA1_BONE	SENP1--HMGA2	2	0	SENP1	6458	chr12:48490126:-	HMGA2	29666	chr12:66221781:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0252	0	SENP1->SUMO1/sentrin_specific_peptidase_1,chr12:48436681-48500091:-,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SJSA1_BONE	1	1	0.0252	TRUE	0	0	0	1	0	TRUE	ACH-000748
SJSA1_BONE	CFL1--COL1A1	1	2	CFL1	6251	chr11:65623406:-	COL1A1	20992	chr17:48273728:-	ONLY_REF_SPLICE	YES	6080	5365	0	0	0.0126	0.0252	CFL1->chr11:65590493-65629497:-,cofilin_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	SJSA1_BONE	0	0	0.0378	FALSE	0	1	0	1	0	FALSE	ACH-000748
SJSA1_BONE	NRIP1--AF127936.7	1	2	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.38	1	0.0126	0.0252	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SJSA1_BONE	0.38	1	0.0378	FALSE	125	705	46	456	0	FALSE	ACH-000748
SJSA1_BONE	CPQ--SDC2	1	1	CPQ	12030	chr8:98041722:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	148	775	0.01	0	0.0126	0.0126	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	SJSA1_BONE	0	0.01	0.0252	FALSE	0	2	0	2	0	FALSE	ACH-000748
SJSA1_BONE	CPQ--SDC2	1	1	CPQ	9826	chr8:97892233:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	NO	91	775	0.02	0	0.0126	0.0126	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	SJSA1_BONE	0	0.02	0.0252	FALSE	2	35	6	7	0	FALSE	ACH-000748
SJSA1_BONE	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0126	0.0126	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SJSA1_BONE	1	1	0.0252	TRUE	160	277	29	98	0	FALSE	ACH-000748
SJSA1_BONE	SENP1--LUM	1	1	SENP1	6458	chr12:48490126:-	LUM	30732	chr12:91498096:-	ONLY_REF_SPLICE	NO	25	597	0.07	0	0.0126	0.0126	SENP1->SUMO1/sentrin_specific_peptidase_1,chr12:48436681-48500091:-,LUM->chr12:91496406-91505608:-,lumican	SJSA1_BONE	0	0.07	0.0252	FALSE	0	0	0	1	0	FALSE	ACH-000748
SKBR3_BREAST	TATDN1--GSDMB	1906	13	TATDN1	1434	chr8:125551266:-	GSDMB	23528	chr17:38066177:-	ONLY_REF_SPLICE	YES	0	12	1	0.99	18.7696	0.128	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.99	1	18.8976	TRUE	0	1	0	3	1	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	840	8	TATDN1	1434	chr8:125551266:-	GSDMB	27467	chr17:38062238:-	ONLY_REF_SPLICE	YES	0	1262	1	0.4	8.272	0.0788	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.4	1	8.3508	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	CYTH1--EIF3H	650	119	CYTH1	1096	chr17:76778284:-	EIF3H	28690	chr8:117768258:-	ONLY_REF_SPLICE	YES	3	0	1	1	6.401	1.1719	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SKBR3_BREAST	1	1	7.5729	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	584	10	TATDN1	1434	chr8:125551266:-	GSDMB	27181	chr17:38062524:-	ONLY_REF_SPLICE	YES	0	1010	1	0.37	5.751	0.0985	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.37	1	5.8495	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	270	58	TATDN1	1531	chr8:125551169:-	GSDMB	23528	chr17:38066177:-	ONLY_REF_SPLICE	YES	5	12	0.98	0.96	2.6589	0.5712	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.96	0.98	3.2301	TRUE	0	1	0	3	1	TRUE	ACH-000017
SKBR3_BREAST	CYTH1--EIF3H	258	62	CYTH1	1096	chr17:76778284:-	EIF3H	32173	chr8:117738411:-	ONLY_REF_SPLICE	YES	3	2508	0.99	0.11	2.5407	0.6106	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SKBR3_BREAST	0.11	0.99	3.1513	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	PREX1--CPNE1	136	58	PREX1	2314	chr20:47364346:-	CPNE1	53305	chr20:34215335:-	ONLY_REF_SPLICE	YES	97	206	0.67	0.48	1.3393	0.5712	GTEx&tcga_normals:1/3694=0.03%,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1,CPNE1->chr20:34213953-34252878:-,copine_1	SKBR3_BREAST	0.48	0.67	1.9105	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	SUMF1--LRRFIP2	130	61	SUMF1	8817	chr3:4418014:-	LRRFIP2	40265	chr3:37170640:-	ONLY_REF_SPLICE	YES	91	53	0.68	0.78	1.2802	0.6007	{Klijn_CCL:Breast=1},SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2	SKBR3_BREAST	0.68	0.78	1.8809	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	129	21	TATDN1	1531	chr8:125551169:-	GSDMB	27467	chr17:38062238:-	ONLY_REF_SPLICE	YES	5	1262	0.97	0.11	1.2703	0.2068	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.11	0.97	1.4771	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	RARA--PKIA	120	11	RARA	1095	chr17:38465538:+	PKIA	21989	chr8:79485046:+	ONLY_REF_SPLICE	YES	1	0	0.99	1	1.1817	0.1083	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,PKIA->chr8:79428374-79517502:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_alpha	SKBR3_BREAST	0.99	1	1.29	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TIMM23B--LINC00843	107	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0537	0.256	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKBR3_BREAST	1	1	1.3097	TRUE	508	994	45	981	0	FALSE	ACH-000017
SKBR3_BREAST	ANKHD1--PCDH1	105	23	ANKHD1	7029	chr5:139825560:+	PCDH1	56142	chr5:141234001:-	ONLY_REF_SPLICE	YES	81	4	0.61	0.97	1.034	0.2265	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,PCDH1->chr5:141232938-141258811:-,protocadherin_1	SKBR3_BREAST	0.61	0.97	1.2605	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	CYTH1--EIF3H	94	27	CYTH1	1096	chr17:76778284:-	EIF3H	35587	chr8:117671219:-	ONLY_REF_SPLICE	YES	3	3176	0.98	0.04	0.9257	0.2659	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SKBR3_BREAST	0.04	0.98	1.1916	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	CYTH1--EIF3H	66	91	CYTH1	1096	chr17:76778284:-	EIF3H	28912	chr8:117768036:-	ONLY_REF_SPLICE	YES	3	1	0.98	0.99	0.6499	0.8961	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SKBR3_BREAST	0.98	0.99	1.546	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	70	30	TATDN1	1531	chr8:125551169:-	GSDMB	27181	chr17:38062524:-	ONLY_REF_SPLICE	YES	5	1010	0.95	0.09	0.6893	0.2954	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.09	0.95	0.9847	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	KLHDC2--SNTB1	69	29	KLHDC2	9999	chr14:50249312:+	SNTB1	23424	chr8:121561198:-	ONLY_REF_SPLICE	YES	160	9	0.38	0.92	0.6795	0.2856	KLHDC2->chr14:50234326-50249909:+,kelch_domain_containing_2,SNTB1->chr8:121547985-121825513:-,syntrophin_beta_1	SKBR3_BREAST	0.38	0.92	0.9651	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	ACOT8--WASH3P	69	13	ACOT8	2353	chr20:44483798:-	WASH3P	13886	chr15:102506273:+	ONLY_REF_SPLICE	YES	157	4	0.34	0.95	0.6795	0.128	ACOT8->acyl-CoA_thioesterase_8,chr20:44470360-44486045:-,WASH3P->WAS_protein_family_homolog_3_pseudogene,chr15:102501356-102516768:+	SKBR3_BREAST	0.34	0.95	0.8075	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TAF2--COLEC10	63	9	TAF2	9798	chr8:120807772:-	COLEC10	41258	chr8:120114587:+	ONLY_REF_SPLICE	YES	91	0	0.44	1	0.6204	0.0886	TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-,COLEC10->chr8:120007691-120118821:+,collectin_subfamily_member_10	SKBR3_BREAST	0.44	1	0.709	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TIMM23--RP11-464F9.1	64	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	252	8	0.21	0.89	0.6303	0.0098	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKBR3_BREAST	0.21	0.89	0.6401	TRUE	519	3926	326	965	0	FALSE	ACH-000017
SKBR3_BREAST	PREX1--CPNE1	45	19	PREX1	2314	chr20:47364346:-	CPNE1	53915	chr20:34214725:-	ONLY_REF_SPLICE	YES	97	292	0.4	0.18	0.4431	0.1871	GTEx&tcga_normals:1/3694=0.03%,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1,CPNE1->chr20:34213953-34252878:-,copine_1	SKBR3_BREAST	0.18	0.4	0.6302	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	OR51S1--TP53I11	42	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4136	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SKBR3_BREAST	1	1	0.4136	TRUE	402	216	10	229	0	FALSE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	33	10	TATDN1	1434	chr8:125551266:-	GSDMB	26465	chr17:38063240:-	ONLY_REF_SPLICE	YES	0	952	1	0.04	0.325	0.0985	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.04	1	0.4235	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	VSTM2L--CTNNBL1	31	10	VSTM2L	3596	chr20:36561991:+	CTNNBL1	32009	chr20:36488301:+	ONLY_REF_SPLICE	YES	106	138	0.28	0.23	0.3053	0.0985	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[30968],VSTM2L->V-set_and_transmembrane_domain_containing_2_like,chr20:36531499-36573752:+,CTNNBL1->catenin_beta_like_1,chr20:36322408-36500531:+	SKBR3_BREAST	0.23	0.28	0.4038	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	ATAD5--TLK2	27	18	ATAD5	20714	chr17:29206505:+	TLK2	48337	chr17:60650576:+	ONLY_REF_SPLICE	YES	7	31	0.87	0.59	0.2659	0.1773	ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+,TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2	SKBR3_BREAST	0.59	0.87	0.4432	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	RARA--PKIA	29	7	RARA	1095	chr17:38465538:+	PKIA	24171	chr8:79510593:+	ONLY_REF_SPLICE	YES	1	20	0.97	0.64	0.2856	0.0689	RARA->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:38465444-38513094:+,retinoic_acid_receptor_alpha,PKIA->chr8:79428374-79517502:+,protein_kinase_(cAMP-dependent,_catalytic)_inhibitor_alpha	SKBR3_BREAST	0.64	0.97	0.3545	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	MT-TA--MT-TC	30	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2954	0.0197	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKBR3_BREAST	1	1	0.3151	FALSE	462	80	0	856	0	FALSE	ACH-000017
SKBR3_BREAST	SUMF1--LRRFIP2	21	31	SUMF1	7757	chr3:4452549:-	LRRFIP2	40265	chr3:37170640:-	ONLY_REF_SPLICE	YES	64	53	0.45	0.5	0.2068	0.3053	{Klijn_CCL:Breast=1},SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2	SKBR3_BREAST	0.45	0.5	0.5121	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TRIO--FBXL7	27	6	TRIO	38970	chr5:14420130:+	FBXL7	77700	chr5:15616092:+	ONLY_REF_SPLICE	YES	6	1	0.85	0.97	0.2659	0.0591	TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor,FBXL7->F-box_and_leucine-rich_repeat_protein_7,Oncogene{Bushman},chr5:15500305-15939900:+	SKBR3_BREAST	0.85	0.97	0.325	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	MT-ND6--MT-TE	25	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2462	0.0394	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKBR3_BREAST	1	1	0.2856	FALSE	499	1288	110	792	0	FALSE	ACH-000017
SKBR3_BREAST	DHX35--ITCH	20	19	DHX35	2243	chr20:37597857:+	ITCH	30373	chr20:32957200:+	ONLY_REF_SPLICE	YES	24	3	0.62	0.93	0.197	0.1871	DHX35->DEAH-box_helicase_35,chr20:37590942-37668366:+,ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase	SKBR3_BREAST	0.62	0.93	0.3841	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	KPNA6--KHDRBS1	22	10	KPNA6	10790	chr1:32628914:+	KHDRBS1	35688	chr1:32525764:+	ONLY_REF_SPLICE	YES	39	1	0.45	0.97	0.2166	0.0985	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},LOCAL_REARRANGEMENT:+:[47188],KPNA6->chr1:32573639-32642169:+,karyopherin_subunit_alpha_6,KHDRBS1->KH_domain_containing,_RNA_binding,_signal_transduction_associated_1,chr1:32479430-32526451:+	SKBR3_BREAST	0.45	0.97	0.3151	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	CSNK2A1--PREX1	23	0	CSNK2A1	3515	chr20:508577:-	PREX1	58980	chr20:47249177:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2265	0	CSNK2A1->Oncogene{Bushman},casein_kinase_2_alpha_1,chr20:459116-524465:-,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1	SKBR3_BREAST	1	1	0.2265	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	RP11-123O10.4--GRIP1	22	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2166	0.0197	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKBR3_BREAST	1	1	0.2363	FALSE	416	2512	207	587	0	FALSE	ACH-000017
SKBR3_BREAST	TBC1D31--ZNF704	20	10	TBC1D31	8244	chr8:124096580:+	ZNF704	36178	chr8:81733850:-	ONLY_REF_SPLICE	YES	106	66	0.22	0.31	0.197	0.0985	TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+,ZNF704->chr8:81540686-81787016:-,zinc_finger_protein_704	SKBR3_BREAST	0.22	0.31	0.2955	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	C15orf57--CBX3	19	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	40	34	0.43	0.47	0.1871	0.1083	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKBR3_BREAST	0.43	0.47	0.2954	TRUE	267	562	48	632	0	FALSE	ACH-000017
SKBR3_BREAST	NIPA2--POLA1	19	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1871	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	SKBR3_BREAST	1	1	0.1871	TRUE	46	1352	75	139	0	FALSE	ACH-000017
SKBR3_BREAST	MT-ND6--MT-TE	14	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.91	1	0.1379	0.1674	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKBR3_BREAST	0.91	1	0.3053	FALSE	499	1288	110	792	0	FALSE	ACH-000017
SKBR3_BREAST	SAMD12--MRPL13	13	19	SAMD12	3503	chr8:119452071:-	MRPL13	22212	chr8:121455548:-	ONLY_REF_SPLICE	YES	40	55	0.44	0.37	0.128	0.1871	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	SKBR3_BREAST	0.37	0.44	0.3151	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	8	37	TATDN1	1531	chr8:125551169:-	GSDMB	24410	chr17:38065295:-	ONLY_REF_SPLICE	YES	5	512	0.9	0.08	0.0788	0.3644	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.08	0.9	0.4432	TRUE	0	1	0	3	1	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	2	60	TATDN1	2128	chr8:125550572:-	GSDMB	23528	chr17:38066177:-	ONLY_REF_SPLICE	YES	6	12	0.91	0.84	0.0197	0.5909	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.84	0.91	0.6106	TRUE	0	1	0	3	1	TRUE	ACH-000017
SKBR3_BREAST	CYTH1--EIF3H	1	62	CYTH1	1096	chr17:76778284:-	EIF3H	30044	chr8:117749526:-	ONLY_REF_SPLICE	YES	3	2679	0.95	0.02	0.0098	0.6106	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SKBR3_BREAST	0.02	0.95	0.6204	TRUE	0	0	0	1	0	FALSE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	9	30	TATDN1	1531	chr8:125551169:-	GSDMB	26465	chr17:38063240:-	ONLY_REF_SPLICE	YES	5	952	0.89	0.04	0.0886	0.2954	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.04	0.89	0.384	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	CYTH1--EIF3H	15	5	CYTH1	1096	chr17:76778284:-	EIF3H	38353	chr8:117668244:-	ONLY_REF_SPLICE	YES	3	2477	0.87	0.01	0.1477	0.0492	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SKBR3_BREAST	0.01	0.87	0.1969	TRUE	0	0	0	2	0	FALSE	ACH-000017
SKBR3_BREAST	MT-ND6--MT-TE	15	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1477	0.0394	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKBR3_BREAST	1	1	0.1871	FALSE	499	1288	110	792	0	FALSE	ACH-000017
SKBR3_BREAST	PBRM1--WDR82	15	4	PBRM1	6967	chr3:52702514:-	WDR82	48674	chr3:52304825:-	ONLY_REF_SPLICE	YES	8	22	0.7	0.46	0.1477	0.0394	PBRM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:52579368-52719933:-,polybromo_1,WDR82->Oncogene{Bushman},WD_repeat_domain_82,chr3:52288437-52322036:-	SKBR3_BREAST	0.46	0.7	0.1871	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TAF2--COLEC10	13	11	TAF2	10884	chr8:120805606:-	COLEC10	41258	chr8:120114587:+	ONLY_REF_SPLICE	YES	94	0	0.2	1	0.128	0.1083	TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-,COLEC10->chr8:120007691-120118821:+,collectin_subfamily_member_10	SKBR3_BREAST	0.2	1	0.2363	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	MT-ATP6--MT-CO1	14	2	MT-ATP6	1108	chrM:8634:+	MT-CO1	4835	chrM:6057:+	INCL_NON_REF_SPLICE	YES	10721	10776	0	0	0.1379	0.0197	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKBR3_BREAST	0	0	0.1576	FALSE	183	97	9	327	0	FALSE	ACH-000017
SKBR3_BREAST	SAMD12--MRPL13	13	6	SAMD12	2373	chr8:119592954:-	MRPL13	22212	chr8:121455548:-	ONLY_REF_SPLICE	YES	46	55	0.29	0.26	0.128	0.0591	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	SKBR3_BREAST	0.26	0.29	0.1871	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	MT-ND6--MT-TE	8	15	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0788	0.1477	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKBR3_BREAST	1	1	0.2265	FALSE	499	1288	110	792	0	FALSE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	9	11	TATDN1	1434	chr8:125551266:-	GSDMB	24410	chr17:38065295:-	ONLY_REF_SPLICE	YES	0	512	1	0.04	0.0886	0.1083	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.04	1	0.1969	TRUE	0	1	0	3	1	TRUE	ACH-000017
SKBR3_BREAST	SLC45A4--RP11-89M16.1	11	1	SLC45A4	2851	chr8:142264088:-	RP11-89M16.1	25605	chr8:129440630:-	ONLY_REF_SPLICE	YES	2	0	0.86	1	0.1083	0.0098	SLC45A4->chr8:142217265-142318404:-,solute_carrier_family_45_member_4,RP11-89M16.1->chr8:129417515-129576925:-	SKBR3_BREAST	0.86	1	0.1181	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	C15orf57--CBX3	8	8	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	39	35	0.29	0.31	0.0788	0.0788	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SKBR3_BREAST	0.29	0.31	0.1576	TRUE	267	562	48	632	0	FALSE	ACH-000017
SKBR3_BREAST	PDE6B--PPP2R2D	10	0	PDE6B	1517	chr4:619889:+	PPP2R2D	24033	chr10:133747967:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0985	0	GTEx_FI:{Brain=[count:3=pct:0.5],Pancreas=[count:2=pct:1.1],Prostate=[count:1=pct:1.6],Lung=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=2660;pct=30.73%;dist=Muscle_-_Skeletal=149,Adipose_-_Subcutaneous=145,Pancreas=128,Artery_-_Tibial=127,Esophagus_-_Muscularis=112,Cells_-_Transformed_fibroblasts=109,Lung=98,Skin_-_Sun_Exposed_(Lower_leg)=90,Adrenal_Gland=85,Breast_-_Mammary_Tissue=84,Artery_-_Aorta=80,Nerve_-_Tibial=78,Testis=75,Cells_-_EBV-transformed_lymphocytes=72,Esophagus_-_Mucosa=70,Adipose_-_Visceral_(Omentum)=69,Thyroid=68,Brain_-_Cerebellum=63,Colon_-_Sigmoid=61,Brain_-_Cerebellar_Hemisphere=59,Heart_-_Left_Ventricle=58,Skin_-_Not_Sun_Exposed_(Suprapubic)=58,Colon_-_Transverse=57,Esophagus_-_Gastroesophageal_Junction=55,Ovary=54,Pituitary=52,Heart_-_Atrial_Appendage=51,Stomach=44,Artery_-_Coronary=44,Prostate=35,Brain_-_Frontal_Cortex_(BA9)=33,Small_Intestine_-_Terminal_Ileum=31,Whole_Blood=28,Brain_-_Cortex=28,Uterus=27,Spleen=24,Brain_-_Nucleus_accumbens_(basal_ganglia)=18,Brain_-_Caudate_(basal_ganglia)=17,Vagina=16,Minor_Salivary_Gland=15,Brain_-_Anterior_cingulate_cortex_(BA24)=15,Liver=14,Kidney_-_Cortex=13,Brain_-_Hypothalamus=9,Brain_-_Putamen_(basal_ganglia)=8,Brain_-_Spinal_cord_(cervical_c-1)=8,Brain_-_Substantia_nigra=7,Brain_-_Hippocampus=5,Brain_-_Amygdala=5,=3,Cervix_-_Ectocervix=2,Bladder=2,Cervix_-_Endocervix=1,Fallopian_Tube=1},PDE6B->chr4:619373-664571:+,phosphodiesterase_6B,PPP2R2D->chr10:133747955-133773331:+,protein_phosphatase_2_regulatory_subunit_B,_delta	SKBR3_BREAST	1	1	0.0985	TRUE	7	65	3	22	0	FALSE	ACH-000017
SKBR3_BREAST	MT-ATP6--MT-CO1	9	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	10991	25245	0	0	0.0886	0.0197	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKBR3_BREAST	0	0	0.1083	FALSE	183	104	9	328	0	FALSE	ACH-000017
SKBR3_BREAST	MECOM--LMCD1-AS1	9	1	MECOM	3693	chr3:169098975:-	LMCD1-AS1	49133	chr3:8033989:-	ONLY_REF_SPLICE	YES	10	0	0.5	1	0.0886	0.0098	MECOM->MDS1_and_EVI1_complex_locus,Oncogene{Bushman},chr3:168801287-169381406:-,LMCD1-AS1->LMCD1_antisense_RNA_1_(head_to_head),chr3:7994492-8653610:-	SKBR3_BREAST	0.5	1	0.0984	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	MT-ND6--MT-TE	4	21	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.0394	0.2068	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKBR3_BREAST	0.89	1	0.2462	FALSE	499	1288	110	792	0	FALSE	ACH-000017
SKBR3_BREAST	ANKHD1--PCDH1	3	23	ANKHD1	7029	chr5:139825560:+	PCDH1	55103	chr5:141235827:-	ONLY_REF_SPLICE	YES	81	4	0.24	0.87	0.0295	0.2265	ANKHD1->ankyrin_repeat_and_KH_domain_containing_1,chr5:139781399-139929163:+,PCDH1->chr5:141232938-141258811:-,protocadherin_1	SKBR3_BREAST	0.24	0.87	0.256	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	MT-ND6--MT-TE	3	23	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0295	0.2265	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKBR3_BREAST	0.9	1	0.256	FALSE	499	1288	110	792	0	FALSE	ACH-000017
SKBR3_BREAST	SAMD12--MRPL13	4	19	SAMD12	3508	chr8:119452066:-	MRPL13	22212	chr8:121455548:-	INCL_NON_REF_SPLICE	YES	43	55	0.35	0.29	0.0394	0.1871	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	SKBR3_BREAST	0.29	0.35	0.2265	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	1	31	TATDN1	1531	chr8:125551169:-	GSDMB	25238	chr17:38064467:-	ONLY_REF_SPLICE	YES	5	736	0.86	0.04	0.0098	0.3053	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.04	0.86	0.3151	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	SAMD12--MRPL13	6	9	SAMD12	3503	chr8:119452071:-	MRPL13	23336	chr8:121444363:-	ONLY_REF_SPLICE	YES	40	1336	0.27	0.01	0.0591	0.0886	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	SKBR3_BREAST	0.01	0.27	0.1477	TRUE	0	0	0	2	0	FALSE	ACH-000017
SKBR3_BREAST	SCARB1--UBC	8	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	281	40	0.03	0.18	0.0788	0.0098	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	SKBR3_BREAST	0.03	0.18	0.0886	TRUE	55	66	6	101	0	FALSE	ACH-000017
SKBR3_BREAST	PREX1--CPNE1	7	3	PREX1	2314	chr20:47364346:-	CPNE1	54337	chr20:34214303:-	ONLY_REF_SPLICE	YES	97	303	0.09	0.03	0.0689	0.0295	GTEx&tcga_normals:1/3694=0.03%,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1,CPNE1->chr20:34213953-34252878:-,copine_1	SKBR3_BREAST	0.03	0.09	0.0984	TRUE	0	0	0	2	0	FALSE	ACH-000017
SKBR3_BREAST	MT-ATP6--MT-CO1	7	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	11104	23230	0	0	0.0689	0.0197	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKBR3_BREAST	0	0	0.0886	FALSE	183	104	9	328	0	FALSE	ACH-000017
SKBR3_BREAST	MT-ATP6--MT-CO1	7	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	13329	25697	0	0	0.0689	0.0197	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKBR3_BREAST	0	0	0.0886	FALSE	183	104	9	328	0	FALSE	ACH-000017
SKBR3_BREAST	VSTM2L--CTNNBL1	5	10	VSTM2L	2545	chr20:36560206:+	CTNNBL1	32009	chr20:36488301:+	ONLY_REF_SPLICE	YES	142	138	0.1	0.1	0.0492	0.0985	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[30968],VSTM2L->V-set_and_transmembrane_domain_containing_2_like,chr20:36531499-36573752:+,CTNNBL1->catenin_beta_like_1,chr20:36322408-36500531:+	SKBR3_BREAST	0.1	0.1	0.1477	TRUE	0	0	0	2	0	FALSE	ACH-000017
SKBR3_BREAST	MTSS1--RP11-941H19.3	7	1	MTSS1	11334	chr8:125597328:-	RP11-941H19.3	31995	chr8:81201052:+	ONLY_REF_SPLICE	YES	7	0	0.53	1	0.0689	0.0098	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,RP11-941H19.3->chr8:81178389-81252075:+	SKBR3_BREAST	0.53	1	0.0787	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	NRIP1--AF127936.7	7	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.73	1	0.0689	0.0098	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKBR3_BREAST	0.73	1	0.0787	FALSE	125	705	46	456	0	FALSE	ACH-000017
SKBR3_BREAST	PVT1--LINC00536	5	7	PVT1	20335	chr8:129082518:+	LINC00536	36325	chr8:116989661:-	ONLY_REF_SPLICE	YES	14	0	0.46	1	0.0492	0.0689	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	SKBR3_BREAST	0.46	1	0.1181	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	1	23	TATDN1	2128	chr8:125550572:-	GSDMB	27467	chr17:38062238:-	ONLY_REF_SPLICE	YES	6	1262	0.8	0.02	0.0098	0.2265	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.02	0.8	0.2363	TRUE	0	0	0	2	0	FALSE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	6	3	TATDN1	1434	chr8:125551266:-	GSDMB	27956	chr17:38061749:-	ONLY_REF_SPLICE	YES	0	1646	1	0.01	0.0591	0.0295	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.01	1	0.0886	FALSE	0	0	0	2	0	FALSE	ACH-000017
SKBR3_BREAST	CYTH1--EIF3H	6	2	CYTH1	1096	chr17:76778284:-	EIF3H	39503	chr8:117661165:-	ONLY_REF_SPLICE	YES	3	2478	0.73	0	0.0591	0.0197	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SKBR3_BREAST	0	0.73	0.0788	FALSE	0	0	0	1	0	FALSE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	4	10	TATDN1	1434	chr8:125551266:-	GSDMB	27158	chr17:38062547:-	INCL_NON_REF_SPLICE	YES	0	1109	1	0.01	0.0394	0.0985	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.01	1	0.1379	TRUE	0	0	0	2	0	FALSE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	4	10	TATDN1	1434	chr8:125551266:-	GSDMB	25238	chr17:38064467:-	ONLY_REF_SPLICE	YES	0	736	1	0.02	0.0394	0.0985	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.02	1	0.1379	TRUE	0	0	0	2	0	FALSE	ACH-000017
SKBR3_BREAST	MT-ATP6--MT-CO1	6	1	MT-ATP6	1180	chrM:8706:+	MT-CO1	5961	chrM:7183:+	INCL_NON_REF_SPLICE	YES	14201	18262	0	0	0.0591	0.0098	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKBR3_BREAST	0	0	0.0689	FALSE	183	104	9	328	0	FALSE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	3	13	TATDN1	1434	chr8:125551266:-	GSDMB	23532	chr17:38066173:-	INCL_NON_REF_SPLICE	YES	0	13	1	0.55	0.0295	0.128	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0.55	1	0.1575	TRUE	0	1	0	3	1	TRUE	ACH-000017
SKBR3_BREAST	MT-ATP6--MT-CO1	5	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	11147	25828	0	0	0.0492	0.0197	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKBR3_BREAST	0	0	0.0689	FALSE	183	104	9	328	0	FALSE	ACH-000017
SKBR3_BREAST	SAMD12--MRPL13	4	6	SAMD12	3503	chr8:119452071:-	MRPL13	24430	chr8:121437606:-	ONLY_REF_SPLICE	YES	40	1389	0.2	0.01	0.0394	0.0591	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	SKBR3_BREAST	0.01	0.2	0.0985	FALSE	0	0	0	2	0	FALSE	ACH-000017
SKBR3_BREAST	MT-ATP6--MT-CO1	4	4	MT-ATP6	1169	chrM:8695:+	MT-CO1	4987	chrM:6209:+	INCL_NON_REF_SPLICE	NO	13533	21731	0	0	0.0394	0.0394	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKBR3_BREAST	0	0	0.0788	FALSE	183	104	9	328	0	FALSE	ACH-000017
SKBR3_BREAST	MT-ND6--MT-TE	5	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0492	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SKBR3_BREAST	1	1	0.0492	FALSE	499	1288	110	792	0	FALSE	ACH-000017
SKBR3_BREAST	CTC-559E9.6--MTSS1	4	3	CTC-559E9.6	4541	chr19:19900630:+	MTSS1	18871	chr8:125603476:-	ONLY_REF_SPLICE	YES	0	11	1	0.39	0.0394	0.0295	CTC-559E9.6->chr19:19887411-19945736:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	SKBR3_BREAST	0.39	1	0.0689	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	PVT1--LINC00536	3	7	PVT1	20424	chr8:129082607:+	LINC00536	36325	chr8:116989661:-	ONLY_REF_SPLICE	YES	12	0	0.45	1	0.0295	0.0689	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	SKBR3_BREAST	0.45	1	0.0984	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	MT-ATP6--MT-CO1	4	2	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	10342	23984	0	0	0.0394	0.0197	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKBR3_BREAST	0	0	0.0591	FALSE	183	104	9	328	0	FALSE	ACH-000017
SKBR3_BREAST	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	123	1	0.05	0.0394	0.0197	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKBR3_BREAST	0.05	1	0.0591	TRUE	465	1949	224	605	0	FALSE	ACH-000017
SKBR3_BREAST	SCAF1--ALDH16A1	4	2	SCAF1	3164	chr19:50148668:+	ALDH16A1	24510	chr19:49971638:+	ONLY_REF_SPLICE	YES	196	88	0.03	0.06	0.0394	0.0197	SCAF1->Oncogene{Bushman},SR-related_CTD_associated_factor_1,chr19:50145382-50161899:+,ALDH16A1->aldehyde_dehydrogenase_16_family_member_A1,chr19:49956426-49974305:+	SKBR3_BREAST	0.03	0.06	0.0591	TRUE	0	0	0	1	0	FALSE	ACH-000017
SKBR3_BREAST	SCAF1--ALDH16A1	4	2	SCAF1	2887	chr19:50148391:+	ALDH16A1	24510	chr19:49971638:+	ONLY_REF_SPLICE	YES	66	88	0.08	0.06	0.0394	0.0197	SCAF1->Oncogene{Bushman},SR-related_CTD_associated_factor_1,chr19:50145382-50161899:+,ALDH16A1->aldehyde_dehydrogenase_16_family_member_A1,chr19:49956426-49974305:+	SKBR3_BREAST	0.06	0.08	0.0591	TRUE	0	0	0	1	0	FALSE	ACH-000017
SKBR3_BREAST	RP11-96H19.1--RP11-446N19.1	4	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.83	0.83	0.0394	0.0098	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKBR3_BREAST	0.83	0.83	0.0492	FALSE	515	4851	409	746	0	FALSE	ACH-000017
SKBR3_BREAST	SAMD12--MRPL13	1	13	SAMD12	3473	chr8:119452101:-	MRPL13	22212	chr8:121455548:-	ONLY_REF_SPLICE	NO	39	55	0.26	0.2	0.0098	0.128	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	SKBR3_BREAST	0.2	0.26	0.1378	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	EIF1--RPS28	4	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	SKBR3_BREAST	1	1	0.0394	TRUE	0	0	0	81	0	FALSE	ACH-000017
SKBR3_BREAST	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0394	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKBR3_BREAST	1	1	0.0394	FALSE	462	80	0	856	0	FALSE	ACH-000017
SKBR3_BREAST	ATAD5--TLK2	1	11	ATAD5	19649	chr17:29205114:+	TLK2	48337	chr17:60650576:+	ONLY_REF_SPLICE	YES	7	31	0.63	0.28	0.0098	0.1083	ATAD5->ATPase_family,_AAA_domain_containing_5,chr17:29158988-29222887:+,TLK2->chr17:60536019-60692842:+,tousled_like_kinase_2	SKBR3_BREAST	0.28	0.63	0.1181	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	TAF2--COLEC10	1	11	TAF2	19415	chr8:120790259:-	COLEC10	41258	chr8:120114587:+	ONLY_REF_SPLICE	YES	141	0	0.08	1	0.0098	0.1083	TAF2->TATA-box_binding_protein_associated_factor_2,chr8:120743015-120845103:-,COLEC10->chr8:120007691-120118821:+,collectin_subfamily_member_10	SKBR3_BREAST	0.08	1	0.1181	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	MT-ATP6--MT-CO1	3	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	12615	24126	0	0	0.0295	0.0197	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SKBR3_BREAST	0	0	0.0492	FALSE	183	104	9	328	0	FALSE	ACH-000017
SKBR3_BREAST	MT-TA--MT-TC	3	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0295	0.0197	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKBR3_BREAST	1	1	0.0492	FALSE	462	80	0	856	0	FALSE	ACH-000017
SKBR3_BREAST	SUMF1--LRRFIP2	1	10	SUMF1	7757	chr3:4452549:-	LRRFIP2	52453	chr3:37138151:-	ONLY_REF_SPLICE	YES	64	95	0.15	0.1	0.0098	0.0985	{Klijn_CCL:Breast=1},SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2	SKBR3_BREAST	0.1	0.15	0.1083	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	ACOT8--WASH3P	3	1	ACOT8	2353	chr20:44483798:-	WASH3P	16650	chr15:102513104:+	ONLY_REF_SPLICE	YES	157	109	0.02	0.04	0.0295	0.0098	ACOT8->acyl-CoA_thioesterase_8,chr20:44470360-44486045:-,WASH3P->WAS_protein_family_homolog_3_pseudogene,chr15:102501356-102516768:+	SKBR3_BREAST	0.02	0.04	0.0393	TRUE	0	0	0	1	0	FALSE	ACH-000017
SKBR3_BREAST	BLOC1S6--AKAP13	3	1	BLOC1S6	1403	chr15:45879723:+	AKAP13	40961	chr15:86182605:+	ONLY_REF_SPLICE	YES	44	15	0.08	0.21	0.0295	0.0098	BLOC1S6->biogenesis_of_lysosomal_organelles_complex_1_subunit_6,chr15:45879321-45908197:+,AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+	SKBR3_BREAST	0.08	0.21	0.0393	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	RNF152--RP11-879F14.1	3	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	7	0	0.36	1	0.0295	0.0098	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	SKBR3_BREAST	0.36	1	0.0393	FALSE	275	472	65	43	0	FALSE	ACH-000017
SKBR3_BREAST	VTCN1--PIK3CA	3	1	VTCN1	1111	chr1:117753446:-	PIK3CA	16605	chr3:178916538:+	ONLY_REF_SPLICE	YES	34	1	0.11	0.8	0.0295	0.0098	VTCN1->Oncogene{Bushman},V-set_domain_containing_T_cell_activation_inhibitor_1,chr1:117686209-117753556:-,PIK3CA->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr3:178865902-178957881:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_alpha	SKBR3_BREAST	0.11	0.8	0.0393	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	EIF2B5--RP11-132N15.1	3	0	EIF2B5	2699	chr3:183854524:+	RP11-132N15.1	15394	chr3:187721776:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	EIF2B5->chr3:183852826-184402546:+,eukaryotic_translation_initiation_factor_2B_subunit_epsilon,RP11-132N15.1->chr3:187715210-187721778:-	SKBR3_BREAST	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	PAK4--MT-ND4L	3	0	PAK4	12918	chr19:39669187:+	MT-ND4L	20189	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	PAK4->chr19:39616410-39673456:+,p21_(RAC1)_activated_kinase_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKBR3_BREAST	1	1	0.0295	FALSE	0	0	0	7	0	FALSE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	2	4	TATDN1	1531	chr8:125551169:-	GSDMB	27956	chr17:38061749:-	ONLY_REF_SPLICE	YES	5	1646	0.55	0	0.0197	0.0394	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0	0.55	0.0591	FALSE	0	0	0	2	0	FALSE	ACH-000017
SKBR3_BREAST	USP36--EIF3H	3	0	USP36	24168	chr17:76794482:-	EIF3H	34824	chr8:117768258:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	USP36->chr17:76783463-76837523:-,ubiquitin_specific_peptidase_36,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SKBR3_BREAST	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	VTI1A--RP11-57H14.3	3	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	SKBR3_BREAST	1	1	0.0295	FALSE	272	151	14	158	0	FALSE	ACH-000017
SKBR3_BREAST	CMTM8--CMTM7	2	3	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	154	5	0.03	0.5	0.0197	0.0295	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	SKBR3_BREAST	0.03	0.5	0.0492	FALSE	118	557	29	88	0	FALSE	ACH-000017
SKBR3_BREAST	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0197	0.0295	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SKBR3_BREAST	0.83	1	0.0492	FALSE	407	2205	196	549	0	FALSE	ACH-000017
SKBR3_BREAST	RPTOR--RNF213	2	3	RPTOR	12519	chr17:78765309:+	RNF213	70443	chr17:78298830:+	ONLY_REF_SPLICE	YES	43	63	0.1	0.07	0.0197	0.0295	GTEx&tcga_normals:1/3694=0.03%,RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1,RNF213->Oncogene{Bushman},chr17:78234665-78372586:+,ring_finger_protein_213	SKBR3_BREAST	0.07	0.1	0.0492	TRUE	0	0	0	2	0	FALSE	ACH-000017
SKBR3_BREAST	CMTM8--CMTM7	2	2	CMTM8	1441	chr3:32280611:+	CMTM7	10744	chr3:32490946:+	ONLY_REF_SPLICE	YES	154	12	0.03	0.25	0.0197	0.0197	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	SKBR3_BREAST	0.03	0.25	0.0394	FALSE	1	9	0	2	0	FALSE	ACH-000017
SKBR3_BREAST	NOL8--OMD	2	2	NOL8	4866	chr9:95083950:-	OMD	25581	chr9:95179856:-	ONLY_REF_SPLICE	YES	32	0	0.11	1	0.0197	0.0197	LOCAL_REARRANGEMENT:-:[88609],NOL8->chr9:95059640-95087918:-,nucleolar_protein_8,OMD->Oncogene{Bushman},chr9:95176527-95186743:-,osteomodulin	SKBR3_BREAST	0.11	1	0.0394	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	NRIP1--AF127936.7	2	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0197	0.0197	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKBR3_BREAST	0.44	1	0.0394	FALSE	164	806	69	479	0	FALSE	ACH-000017
SKBR3_BREAST	DEPDC1B--PDE4D	2	1	DEPDC1B	4088	chr5:59982789:-	PDE4D	27733	chr5:59481514:-	ONLY_REF_SPLICE	YES	33	0	0.08	1	0.0197	0.0098	{Klijn_CCL:Ovary=1},NEIGHBORS[74792],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D	SKBR3_BREAST	0.08	1	0.0295	FALSE	0	2	0	2	0	FALSE	ACH-000017
SKBR3_BREAST	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0.0098	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKBR3_BREAST	1	1	0.0295	FALSE	292	1546	117	613	0	FALSE	ACH-000017
SKBR3_BREAST	PVT1--LINC00536	2	1	PVT1	13955	chr8:129001537:+	LINC00536	36325	chr8:116989661:-	ONLY_REF_SPLICE	YES	15	0	0.17	1	0.0197	0.0098	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	SKBR3_BREAST	0.17	1	0.0295	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	SAMD12--MRPL13	1	5	SAMD12	3473	chr8:119452101:-	MRPL13	23336	chr8:121444363:-	ONLY_REF_SPLICE	YES	39	1336	0.13	0	0.0098	0.0492	SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12,MRPL13->chr8:121393000-121457642:-,mitochondrial_ribosomal_protein_L13	SKBR3_BREAST	0	0.13	0.059	FALSE	0	0	0	2	0	FALSE	ACH-000017
SKBR3_BREAST	SF1--GNAS	2	1	SF1	3289	chr11:64543970:-	GNAS	32063	chr20:57470667:+	ONLY_REF_SPLICE	NO	212	940	0.01	0	0.0197	0.0098	GTEx_FI:{Thyroid=[count:3=pct:1.7],Salivary_Gland=[count:1=pct:2.6]},GTEx_v2:{count=8;pct=0.09%;dist=Thyroid=3,Pituitary=3,Minor_Salivary_Gland=1,Brain_-_Hypothalamus=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SKBR3_BREAST	0	0.01	0.0295	FALSE	4	13	1	15	0	FALSE	ACH-000017
SKBR3_BREAST	C17orf76-AS1--PPA2	2	0	C17orf76-AS1	1593	chr17:16342728:+	PPA2	26365	chr4:106320321:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	C17orf76-AS1->chr17:16342136-16381992:+,PPA2->chr4:106290234-106395238:-,pyrophosphatase_(inorganic)_2	SKBR3_BREAST	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	CYTH1--EIF3H	2	0	CYTH1	1096	chr17:76778284:-	EIF3H	40624	chr8:117658842:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	{Klijn_CCL:Breast=1},CYTH1->chr17:76670130-76778379:-,cytohesin_1,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	SKBR3_BREAST	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	DSCR3--TTC3	2	0	DSCR3	1724	chr21:38639539:-	TTC3	39100	chr21:38480692:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	LOCAL_INVERSION:-:+:[20308],DSCR3->DSCR3_arrestin_fold_containing,chr21:38595721-38640262:-,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	SKBR3_BREAST	1	1	0.0197	TRUE	0	9	0	44	1	FALSE	ACH-000017
SKBR3_BREAST	EIF2B5--RP11-132N15.1	2	0	EIF2B5	2699	chr3:183854524:+	RP11-132N15.1	16482	chr3:187715546:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	EIF2B5->chr3:183852826-184402546:+,eukaryotic_translation_initiation_factor_2B_subunit_epsilon,RP11-132N15.1->chr3:187715210-187721778:-	SKBR3_BREAST	1	1	0.0197	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	NRIP1--AF127936.7	2	0	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SKBR3_BREAST	1	1	0.0197	FALSE	8	57	1	47	0	FALSE	ACH-000017
SKBR3_BREAST	PVT1--LINC00536	1	4	PVT1	18060	chr8:129022690:+	LINC00536	36325	chr8:116989661:-	ONLY_REF_SPLICE	NO	18	0	0.22	1	0.0098	0.0394	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,LINC00536->chr8:116962736-117337297:-,long_intergenic_non-protein_coding_RNA_536	SKBR3_BREAST	0.22	1	0.0492	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	16625	chr12:66911756:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0197	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKBR3_BREAST	1	1	0.0197	FALSE	0	1	1	3	0	FALSE	ACH-000017
SKBR3_BREAST	TBC1D31--ZNF704	1	3	TBC1D31	6721	chr8:124095057:+	ZNF704	36178	chr8:81733850:-	ONLY_REF_SPLICE	YES	104	66	0.04	0.06	0.0098	0.0295	TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+,ZNF704->chr8:81540686-81787016:-,zinc_finger_protein_704	SKBR3_BREAST	0.04	0.06	0.0393	TRUE	0	0	0	1	0	FALSE	ACH-000017
SKBR3_BREAST	CTC-559E9.6--MTSS1	1	2	CTC-559E9.6	1393	chr19:19887803:+	MTSS1	18871	chr8:125603476:-	ONLY_REF_SPLICE	NO	2	11	0.6	0.21	0.0098	0.0197	CTC-559E9.6->chr19:19887411-19945736:+,MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1	SKBR3_BREAST	0.21	0.6	0.0295	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	MTSS1--RP11-941H19.3	1	2	MTSS1	12346	chr8:125592792:-	RP11-941H19.3	30856	chr8:81186340:+	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0098	0.0197	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,RP11-941H19.3->chr8:81178389-81252075:+	SKBR3_BREAST	0.3	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	MYO5B--CCDC11	1	2	MYO5B	6132	chr18:47563220:-	CCDC11	60285	chr18:47765075:-	ONLY_REF_SPLICE	YES	16	0	0.16	1	0.0098	0.0197	LOCAL_REARRANGEMENT:-:[32100],MYO5B->chr18:47349183-47721463:-,myosin_VB,CCDC11->chr18:47753563-47792892:-	SKBR3_BREAST	0.16	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	RNF152--RP11-879F14.1	1	2	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	NO	7	0	0.3	1	0.0098	0.0197	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	SKBR3_BREAST	0.3	1	0.0295	FALSE	119	124	24	18	0	FALSE	ACH-000017
SKBR3_BREAST	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	44	1	0.06	0.0098	0.0197	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKBR3_BREAST	0.06	1	0.0295	TRUE	458	1351	185	561	0	FALSE	ACH-000017
SKBR3_BREAST	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0098	0.0197	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKBR3_BREAST	1	1	0.0295	TRUE	62	24	1	171	0	FALSE	ACH-000017
SKBR3_BREAST	VSTM2L--CTNNBL1	1	2	VSTM2L	1375	chr20:36531873:+	CTNNBL1	32009	chr20:36488301:+	ONLY_REF_SPLICE	NO	204	138	0.01	0.02	0.0098	0.0197	{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[30968],VSTM2L->V-set_and_transmembrane_domain_containing_2_like,chr20:36531499-36573752:+,CTNNBL1->catenin_beta_like_1,chr20:36322408-36500531:+	SKBR3_BREAST	0.01	0.02	0.0295	FALSE	0	0	0	1	0	FALSE	ACH-000017
SKBR3_BREAST	BLOC1S6--AKAP13	1	1	BLOC1S6	2907	chr15:45884474:+	AKAP13	40961	chr15:86182605:+	ONLY_REF_SPLICE	YES	45	15	0.04	0.12	0.0098	0.0098	BLOC1S6->biogenesis_of_lysosomal_organelles_complex_1_subunit_6,chr15:45879321-45908197:+,AKAP13->A-kinase_anchoring_protein_13,Oncogene{Bushman},chr15:85923802-86292586:+	SKBR3_BREAST	0.04	0.12	0.0196	TRUE	0	0	0	2	0	FALSE	ACH-000017
SKBR3_BREAST	DUS1L--CCDC57	1	1	DUS1L	4027	chr17:80020737:-	CCDC57	17450	chr17:80153240:-	ONLY_REF_SPLICE	YES	348	33	0.01	0.06	0.0098	0.0098	LOCAL_REARRANGEMENT:-:[35573],DUS1L->chr17:80015382-80023763:-,dihydrouridine_synthase_1_like,CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57	SKBR3_BREAST	0.01	0.06	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000017
SKBR3_BREAST	HERPUD2--SEPT7	1	1	HERPUD2	2388	chr7:35733794:-	SEPT7	19307	chr7:35872408:+	ONLY_REF_SPLICE	YES	56	23	0.03	0.08	0.0098	0.0098	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},{Klijn_CCL:Lung=1,Brain=1},HERPUD2->HERPUD_family_member_2,chr7:35672269-35735181:-,SEPT7->chr7:35840542-35944917:+,septin_7	SKBR3_BREAST	0.03	0.08	0.0196	TRUE	0	0	0	1	0	FALSE	ACH-000017
SKBR3_BREAST	MTSS1--RP11-941H19.3	1	1	MTSS1	12346	chr8:125592792:-	RP11-941H19.3	31995	chr8:81201052:+	ONLY_REF_SPLICE	NO	7	0	0.22	1	0.0098	0.0098	MTSS1->chr8:125563031-125740730:-,metastasis_suppressor_1,RP11-941H19.3->chr8:81178389-81252075:+	SKBR3_BREAST	0.22	1	0.0196	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	NCOR2--UBC	1	1	NCOR2	2329	chr12:125020111:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	5	40	0.29	0.05	0.0098	0.0098	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	SKBR3_BREAST	0.05	0.29	0.0196	TRUE	48	117	12	14	0	FALSE	ACH-000017
SKBR3_BREAST	NDUFB2--HIAT1	1	1	NDUFB2	2961	chr7:140396642:+	HIAT1	17452	chr1:100515465:+	ONLY_REF_SPLICE	YES	744	116	0	0.02	0.0098	0.0098	NDUFB2->NADH:ubiquinone_oxidoreductase_subunit_B2,chr7:140390577-140422590:+,HIAT1->chr1:100503653-100548933:+	SKBR3_BREAST	0	0.02	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000017
SKBR3_BREAST	PBRM1--WDR82	1	1	PBRM1	5819	chr3:52712516:-	WDR82	48674	chr3:52304825:-	ONLY_REF_SPLICE	YES	10	22	0.17	0.08	0.0098	0.0098	PBRM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:52579368-52719933:-,polybromo_1,WDR82->Oncogene{Bushman},WD_repeat_domain_82,chr3:52288437-52322036:-	SKBR3_BREAST	0.08	0.17	0.0196	TRUE	0	1	0	1	1	TRUE	ACH-000017
SKBR3_BREAST	PLCD4--CXCR2	1	1	PLCD4	4369	chr2:219480785:+	CXCR2	21675	chr2:218991014:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0098	0.0098	PLCD4->chr2:219472488-219501907:+,phospholipase_C_delta_4,CXCR2->C-X-C_motif_chemokine_receptor_2,chr2:218990012-219001976:+	SKBR3_BREAST	0.67	1	0.0196	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	PLCD4--CXCR2	1	1	PLCD4	4266	chr2:219480682:+	CXCR2	21675	chr2:218991014:+	ONLY_REF_SPLICE	YES	2	0	0.5	1	0.0098	0.0098	PLCD4->chr2:219472488-219501907:+,phospholipase_C_delta_4,CXCR2->C-X-C_motif_chemokine_receptor_2,chr2:218990012-219001976:+	SKBR3_BREAST	0.5	1	0.0196	TRUE	0	0	0	2	0	TRUE	ACH-000017
SKBR3_BREAST	PRSS22--SLC3A2	1	1	PRSS22	1148	chr16:2908024:-	SLC3A2	15179	chr11:62649365:+	ONLY_REF_SPLICE	YES	269	1126	0.01	0	0.0098	0.0098	PRSS22->chr16:2902728-2908171:-,protease,_serine_22,SLC3A2->chr11:62623518-62656352:+,solute_carrier_family_3_member_2	SKBR3_BREAST	0	0.01	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000017
SKBR3_BREAST	ST3GAL4--DCPS	1	1	ST3GAL4	10026	chr11:126277244:+	DCPS	21196	chr11:126201300:+	ONLY_REF_SPLICE	NO	372	120	0.01	0.02	0.0098	0.0098	LOCAL_REARRANGEMENT:+:[9891],ST3GAL4->ST3_beta-galactoside_alpha-2,3-sialyltransferase_4,chr11:126225535-126310239:+,DCPS->chr11:126173647-126215644:+,decapping_enzyme,_scavenger	SKBR3_BREAST	0.01	0.02	0.0196	FALSE	0	0	0	1	0	FALSE	ACH-000017
SKBR3_BREAST	TATDN1--GSDMB	1	1	TATDN1	1434	chr8:125551266:-	GSDMB	28488	chr17:38061217:-	ONLY_REF_SPLICE	YES	0	1361	1	0	0.0098	0.0098	{Klijn_CCL:Breast=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,GSDMB->chr17:38060848-38076107:-,gasdermin_B	SKBR3_BREAST	0	1	0.0196	FALSE	0	0	0	2	0	FALSE	ACH-000017
SKBR3_BREAST	TBC1D31--SLC30A8	1	1	TBC1D31	28498	chr8:124157095:+	SLC30A8	35787	chr8:118019230:+	ONLY_REF_SPLICE	NO	145	0	0.01	1	0.0098	0.0098	TBC1D31->TBC1_domain_family_member_31,chr8:124054208-124164393:+,SLC30A8->chr8:117962512-118188953:+,solute_carrier_family_30_member_8	SKBR3_BREAST	0.01	1	0.0196	FALSE	0	0	0	2	0	FALSE	ACH-000017
SKBR3_BREAST	TMCC1--CDV3	1	1	TMCC1	1083	chr3:129612337:-	CDV3	28812	chr3:133302849:+	ONLY_REF_SPLICE	NO	1	42	0.67	0.05	0.0098	0.0098	TMCC1->chr3:129366635-129612419:-,transmembrane_and_coiled-coil_domain_family_1,CDV3->CDV3_homolog,chr3:133292574-133309105:+	SKBR3_BREAST	0.05	0.67	0.0196	TRUE	0	0	0	1	0	TRUE	ACH-000017
SKBR3_BREAST	TRAM1--LACTB2	1	1	TRAM1	8875	chr8:71499130:-	LACTB2	19546	chr8:71556478:-	ONLY_REF_SPLICE	YES	826	686	0	0	0.0098	0.0098	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_REARRANGEMENT:-:[26931],TRAM1->chr8:71485677-71520622:-,translocation_associated_membrane_protein_1,LACTB2->chr8:71547553-71581409:-,lactamase_beta_2	SKBR3_BREAST	0	0	0.0196	FALSE	0	1	0	2	0	FALSE	ACH-000017
CL14_LARGE_INTESTINE	FGFRL1--IGF2	528	20	FGFRL1	8547	chr4:1020073:+	IGF2	23159	chr11:2152839:-	INCL_NON_REF_SPLICE	YES	198	7354	0.73	0.07	6.3101	0.239	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.07	0.73	6.5491	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	463	68	FGFRL1	8547	chr4:1020073:+	IGF2	22716	chr11:2153282:-	INCL_NON_REF_SPLICE	YES	198	3811	0.73	0.12	5.5333	0.8127	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.12	0.73	6.346	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	408	61	FGFRL1	8547	chr4:1020073:+	IGF2	22855	chr11:2153143:-	INCL_NON_REF_SPLICE	YES	198	5285	0.7	0.08	4.876	0.729	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.08	0.7	5.605	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	395	50	FGFRL1	8547	chr4:1020073:+	IGF2	22967	chr11:2153031:-	INCL_NON_REF_SPLICE	YES	198	5682	0.69	0.07	4.7207	0.5976	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.07	0.69	5.3183	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	304	40	FGFRL1	8547	chr4:1020073:+	IGF2	23024	chr11:2152974:-	INCL_NON_REF_SPLICE	YES	198	6104	0.63	0.05	3.6331	0.478	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.05	0.63	4.1111	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	BIRC6--TTC27	139	51	BIRC6	65151	chr2:32756618:+	TTC27	100936	chr2:32983359:+	ONLY_REF_SPLICE	YES	27	3	0.88	0.98	1.6612	0.6095	{Klijn_CCL:Colo-Rectal=1},NEIGHBORS[9133],BIRC6->Oncogene{Bushman},baculoviral_IAP_repeat_containing_6,chr2:32582096-32843966:+,TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27	CL14_LARGE_INTESTINE	0.88	0.98	2.2707	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	124	64	FGFRL1	8547	chr4:1020073:+	IGF2	22744	chr11:2153254:-	INCL_NON_REF_SPLICE	YES	198	4785	0.49	0.04	1.4819	0.7649	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.04	0.49	2.2468	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	126	56	FGFRL1	8547	chr4:1020073:+	IGF2	22927	chr11:2153071:-	INCL_NON_REF_SPLICE	YES	198	5624	0.48	0.03	1.5058	0.6693	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.03	0.48	2.1751	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	120	64	FGFRL1	8547	chr4:1020073:+	IGF2	22763	chr11:2153235:-	INCL_NON_REF_SPLICE	YES	198	4182	0.48	0.04	1.4341	0.7649	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.04	0.48	2.199	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	81	27	FGFRL1	8547	chr4:1020073:+	IGF2	23116	chr11:2152882:-	INCL_NON_REF_SPLICE	YES	198	6775	0.35	0.02	0.968	0.3227	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.02	0.35	1.2907	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	TIMM23B--LINC00843	70	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8366	0.251	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CL14_LARGE_INTESTINE	1	1	1.0876	TRUE	508	994	45	981	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-TA--MT-TC	50	11	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5976	0.1315	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CL14_LARGE_INTESTINE	1	1	0.7291	FALSE	462	80	0	856	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	9	160	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	17	0	0.91	1	0.1076	1.9122	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.91	1	2.0198	FALSE	344	826	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	32	58	FGFRL1	8547	chr4:1020073:+	IGF2	22908	chr11:2153090:-	INCL_NON_REF_SPLICE	YES	198	5377	0.31	0.02	0.3824	0.6932	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.02	0.31	1.0756	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	26	68	FGFRL1	8547	chr4:1020073:+	IGF2	22699	chr11:2153299:-	INCL_NON_REF_SPLICE	YES	198	3610	0.32	0.03	0.3107	0.8127	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.03	0.32	1.1234	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	TIMM23--RP11-464F9.1	40	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	177	1	0.19	0.98	0.478	0.0239	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CL14_LARGE_INTESTINE	0.19	0.98	0.5019	TRUE	519	3926	326	965	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	PKN2--HIAT1	37	13	PKN2	3863	chr1:89226059:+	HIAT1	27882	chr1:100515465:+	ONLY_REF_SPLICE	YES	25	80	0.67	0.38	0.4422	0.1554	PKN2->chr1:89149905-89301938:+,protein_kinase_N2,HIAT1->chr1:100503653-100548933:+	CL14_LARGE_INTESTINE	0.38	0.67	0.5976	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	PPIG--ITGA6	37	13	PPIG	1151	chr2:170441000:+	ITGA6	22139	chr2:173330267:+	ONLY_REF_SPLICE	YES	19	108	0.72	0.32	0.4422	0.1554	PPIG->chr2:170440850-170497916:+,peptidylprolyl_isomerase_G,ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6	CL14_LARGE_INTESTINE	0.32	0.72	0.5976	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	118	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	7	0	0.95	1	0.0598	1.4102	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.95	1	1.47	FALSE	344	821	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	18	64	FGFRL1	8547	chr4:1020073:+	IGF2	22720	chr11:2153278:-	INCL_NON_REF_SPLICE	YES	198	3792	0.29	0.02	0.2151	0.7649	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.02	0.29	0.98	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	15	68	FGFRL1	8547	chr4:1020073:+	IGF2	22682	chr11:2153316:-	INCL_NON_REF_SPLICE	NO	198	3063	0.3	0.03	0.1793	0.8127	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.03	0.3	0.992	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	116	MT-ND4	1475	chrM:11234:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	136	0	0.47	1	0.0359	1.3863	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.47	1	1.4222	FALSE	344	827	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	14	69	FGFRL1	8547	chr4:1020073:+	IGF2	22635	chr11:2153363:-	INCL_NON_REF_SPLICE	YES	198	2537	0.3	0.03	0.1673	0.8246	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.03	0.3	0.9919	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	104	MT-ND4	1209	chrM:10968:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	16	0	0.87	1	0.0598	1.2429	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.87	1	1.3027	FALSE	344	826	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	108	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	23	0	0.83	1	0.0359	1.2907	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.83	1	1.3266	FALSE	344	827	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	13	64	FGFRL1	8547	chr4:1020073:+	IGF2	22782	chr11:2153216:-	INCL_NON_REF_SPLICE	YES	198	3842	0.28	0.02	0.1554	0.7649	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.02	0.28	0.9203	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	23	23	FGFRL1	8322	chr4:1019848:+	IGF2	23123	chr11:2152875:-	INCL_NON_REF_SPLICE	NO	467	6743	0.09	0.01	0.2749	0.2749	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.09	0.5498	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-CO3--MT-ATP6	11	69	MT-CO3	1322	chrM:9528:+	MT-ATP6	5185	chrM:8927:+	INCL_NON_REF_SPLICE	YES	7	64	0.92	0.56	0.1315	0.8246	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL14_LARGE_INTESTINE	0.56	0.92	0.9561	FALSE	189	492	56	216	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	HSP90AB1--MT-RNR2	27	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2057	0	0.01	1	0.3227	0.012	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CL14_LARGE_INTESTINE	0.01	1	0.3347	FALSE	13	9	0	364	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	11	58	FGFRL1	8412	chr4:1019938:+	IGF2	22719	chr11:2153279:-	INCL_NON_REF_SPLICE	YES	396	3815	0.15	0.02	0.1315	0.6932	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.02	0.15	0.8247	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	16	35	FGFRL1	8547	chr4:1020073:+	IGF2	23043	chr11:2152955:-	INCL_NON_REF_SPLICE	YES	198	6219	0.2	0.01	0.1912	0.4183	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.2	0.6095	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	85	MT-CO3	1400	chrM:9606:+	MT-ATP6	4895	chrM:8637:+	INCL_NON_REF_SPLICE	YES	5	3	0.95	0.97	0.0359	1.0158	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL14_LARGE_INTESTINE	0.95	0.97	1.0517	FALSE	189	492	56	216	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	19	16	FGFRL1	8547	chr4:1020073:+	IGF2	23191	chr11:2152807:-	INCL_NON_REF_SPLICE	YES	198	6974	0.15	0	0.2271	0.1912	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0	0.15	0.4183	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND6--MT-TE	22	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2629	0.0359	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL14_LARGE_INTESTINE	1	1	0.2988	FALSE	499	1288	110	792	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	EEA1--RP11-511B23.2	20	9	EEA1	1289	chr12:93322819:-	RP11-511B23.2	50276	chr12:93398374:-	ONLY_REF_SPLICE	YES	7	0	0.81	1	0.239	0.1076	LOCAL_REARRANGEMENT:-:[74084],EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,RP11-511B23.2->chr12:93397191-93609455:-	CL14_LARGE_INTESTINE	0.81	1	0.3466	TRUE	0	1	0	1	1	TRUE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	7	61	FGFRL1	8547	chr4:1020073:+	IGF2	22874	chr11:2153124:-	INCL_NON_REF_SPLICE	NO	198	5319	0.26	0.01	0.0837	0.729	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.26	0.8127	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	6	64	FGFRL1	8547	chr4:1020073:+	IGF2	22767	chr11:2153231:-	INCL_NON_REF_SPLICE	NO	198	4074	0.26	0.02	0.0717	0.7649	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.02	0.26	0.8366	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	8	54	FGFRL1	8194	chr4:1019720:+	IGF2	22685	chr11:2153313:-	INCL_NON_REF_SPLICE	YES	485	3280	0.11	0.02	0.0956	0.6454	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.02	0.11	0.741	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	13	34	FGFRL1	8547	chr4:1020073:+	IGF2	23067	chr11:2152931:-	INCL_NON_REF_SPLICE	NO	198	6373	0.19	0.01	0.1554	0.4063	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.19	0.5617	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	5	61	FGFRL1	8549	chr4:1020075:+	IGF2	22874	chr11:2153124:-	INCL_NON_REF_SPLICE	NO	190	5319	0.26	0.01	0.0598	0.729	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.26	0.7888	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	6	57	FGFRL1	8481	chr4:1020007:+	IGF2	22826	chr11:2153172:-	INCL_NON_REF_SPLICE	YES	295	4891	0.18	0.01	0.0717	0.6812	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.18	0.7529	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	6	57	FGFRL1	8547	chr4:1020073:+	IGF2	22920	chr11:2153078:-	INCL_NON_REF_SPLICE	NO	198	5557	0.24	0.01	0.0717	0.6812	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.24	0.7529	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	7	50	FGFRL1	8181	chr4:1019707:+	IGF2	22781	chr11:2153217:-	INCL_NON_REF_SPLICE	NO	451	3835	0.11	0.01	0.0837	0.5976	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.11	0.6813	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	58	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	2	8	0.97	0.89	0.0598	0.6932	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL14_LARGE_INTESTINE	0.89	0.97	0.753	FALSE	189	492	56	216	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	4	61	FGFRL1	8549	chr4:1020075:+	IGF2	22891	chr11:2153107:-	INCL_NON_REF_SPLICE	NO	190	5433	0.25	0.01	0.0478	0.729	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.25	0.7768	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	4	61	FGFRL1	8546	chr4:1020072:+	IGF2	22845	chr11:2153153:-	INCL_NON_REF_SPLICE	YES	199	5246	0.25	0.01	0.0478	0.729	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.25	0.7768	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	4	61	FGFRL1	8322	chr4:1019848:+	IGF2	22702	chr11:2153296:-	INCL_NON_REF_SPLICE	YES	467	3756	0.12	0.02	0.0478	0.729	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.02	0.12	0.7768	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	61	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	NO	2	9	0.97	0.88	0.0478	0.729	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL14_LARGE_INTESTINE	0.88	0.97	0.7768	FALSE	189	492	56	216	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	3	64	FGFRL1	8547	chr4:1020073:+	IGF2	22735	chr11:2153263:-	INCL_NON_REF_SPLICE	NO	198	3932	0.25	0.02	0.0359	0.7649	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.02	0.25	0.8008	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	9	40	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	8107	0	0.01	1	0.1076	0.478	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.01	1	0.5856	FALSE	328	800	43	304	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	9	40	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	242	0	0.17	1	0.1076	0.478	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.17	1	0.5856	FALSE	344	827	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	PLXDC1--TAF13	19	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2271	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	CL14_LARGE_INTESTINE	1	1	0.2271	TRUE	7	10	0	216	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	6	50	FGFRL1	8189	chr4:1019715:+	IGF2	22751	chr11:2153247:-	INCL_NON_REF_SPLICE	NO	464	4509	0.11	0.01	0.0717	0.5976	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.11	0.6693	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	58	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	2	5	0.97	0.93	0.0478	0.6932	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL14_LARGE_INTESTINE	0.93	0.97	0.741	FALSE	189	492	56	216	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	61	MT-CO3	1153	chrM:9359:+	MT-ATP6	5333	chrM:9075:+	INCL_NON_REF_SPLICE	YES	6	7	0.91	0.9	0.0359	0.729	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL14_LARGE_INTESTINE	0.9	0.91	0.7649	FALSE	189	492	56	216	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	4	53	FGFRL1	8184	chr4:1019710:+	IGF2	22716	chr11:2153282:-	INCL_NON_REF_SPLICE	NO	457	3811	0.11	0.01	0.0478	0.6334	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.11	0.6812	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	4	53	FGFRL1	8181	chr4:1019707:+	IGF2	22715	chr11:2153283:-	INCL_NON_REF_SPLICE	NO	451	3799	0.11	0.01	0.0478	0.6334	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.11	0.6812	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	3	54	FGFRL1	8194	chr4:1019720:+	IGF2	22667	chr11:2153331:-	INCL_NON_REF_SPLICE	YES	485	2708	0.11	0.02	0.0359	0.6454	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.02	0.11	0.6813	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	9	30	FGFRL1	7821	chr4:1019347:+	IGF2	22716	chr11:2153282:-	INCL_NON_REF_SPLICE	NO	428	3811	0.08	0.01	0.1076	0.3585	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.08	0.4661	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	9	29	FGFRL1	8322	chr4:1019848:+	IGF2	23091	chr11:2152907:-	INCL_NON_REF_SPLICE	NO	467	6846	0.08	0.01	0.1076	0.3466	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.08	0.4542	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	3	53	FGFRL1	8184	chr4:1019710:+	IGF2	22654	chr11:2153344:-	INCL_NON_REF_SPLICE	NO	457	2741	0.11	0.02	0.0359	0.6334	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.02	0.11	0.6693	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-TA--MT-TC	14	9	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1673	0.1076	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CL14_LARGE_INTESTINE	1	1	0.2749	FALSE	462	80	0	856	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	OR51S1--TP53I11	16	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1912	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	CL14_LARGE_INTESTINE	1	1	0.1912	TRUE	402	216	10	229	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	47	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	NO	3	1	0.94	0.98	0.0478	0.5617	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL14_LARGE_INTESTINE	0.94	0.98	0.6095	FALSE	189	492	56	216	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	3	50	FGFRL1	8190	chr4:1019716:+	IGF2	22747	chr11:2153251:-	INCL_NON_REF_SPLICE	NO	470	4662	0.1	0.01	0.0359	0.5976	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.1	0.6335	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	3	50	FGFRL1	8190	chr4:1019716:+	IGF2	22719	chr11:2153279:-	INCL_NON_REF_SPLICE	NO	470	3815	0.1	0.01	0.0359	0.5976	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.1	0.6335	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	3	48	FGFRL1	8547	chr4:1020073:+	IGF2	22979	chr11:2153019:-	INCL_NON_REF_SPLICE	NO	198	5840	0.2	0.01	0.0359	0.5736	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.2	0.6095	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	BEND3--RP1-60O19.1	13	7	BEND3	5222	chr6:107419755:-	RP1-60O19.1	24503	chr6:107197663:-	ONLY_REF_SPLICE	YES	2	0	0.91	1	0.1554	0.0837	BEND3->BEN_domain_containing_3,chr6:107386386-107436473:-,RP1-60O19.1->chr6:107165327-107235416:-	CL14_LARGE_INTESTINE	0.91	1	0.2391	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	3	46	FGFRL1	8547	chr4:1020073:+	IGF2	22986	chr11:2153012:-	INCL_NON_REF_SPLICE	NO	198	5809	0.2	0.01	0.0359	0.5497	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.2	0.5856	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	7	29	FGFRL1	8137	chr4:1019663:+	IGF2	23024	chr11:2152974:-	INCL_NON_REF_SPLICE	YES	392	6104	0.08	0.01	0.0837	0.3466	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.08	0.4303	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	3	45	FGFRL1	8181	chr4:1019707:+	IGF2	22907	chr11:2153091:-	INCL_NON_REF_SPLICE	NO	451	5417	0.1	0.01	0.0359	0.5378	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.1	0.5737	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	39	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	17	0	0.72	1	0.0478	0.4661	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.72	1	0.5139	FALSE	344	826	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	3	40	FGFRL1	8547	chr4:1020073:+	IGF2	23026	chr11:2152972:-	INCL_NON_REF_SPLICE	NO	198	6161	0.18	0.01	0.0359	0.478	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.18	0.5139	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	40	MT-ND4	1471	chrM:11230:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	128	0	0.25	1	0.0359	0.478	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.25	1	0.5139	FALSE	344	827	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	39	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	18	0	0.7	1	0.0359	0.4661	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.7	1	0.502	FALSE	344	826	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	39	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	12	0	0.78	1	0.0359	0.4661	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.78	1	0.502	FALSE	344	826	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	ACTR3--NOL10	11	6	ACTR3	7738	chr2:114691963:+	NOL10	27698	chr2:10822195:-	ONLY_REF_SPLICE	YES	581	45	0.03	0.27	0.1315	0.0717	ACTR3->ARP3_actin-related_protein_3_homolog_(yeast),chr2:114647537-114720173:+,NOL10->chr2:10710892-10830101:-,nucleolar_protein_10	CL14_LARGE_INTESTINE	0.03	0.27	0.2032	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	HSP90AB1--MT-RNR2	12	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2057	0	0.01	1	0.1434	0.012	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CL14_LARGE_INTESTINE	0.01	1	0.1554	FALSE	13	9	0	364	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	4	32	FGFRL1	8547	chr4:1020073:+	IGF2	23084	chr11:2152914:-	INCL_NON_REF_SPLICE	NO	198	6848	0.15	0.01	0.0478	0.3824	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.15	0.4302	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	3	35	FGFRL1	7952	chr4:1019478:+	IGF2	22782	chr11:2153216:-	INCL_NON_REF_SPLICE	YES	252	3842	0.13	0.01	0.0359	0.4183	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.13	0.4542	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	3	35	FGFRL1	8547	chr4:1020073:+	IGF2	23058	chr11:2152940:-	INCL_NON_REF_SPLICE	NO	198	6327	0.16	0.01	0.0359	0.4183	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.16	0.4542	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	4	30	FGFRL1	7821	chr4:1019347:+	IGF2	22682	chr11:2153316:-	INCL_NON_REF_SPLICE	NO	428	3063	0.07	0.01	0.0478	0.3585	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.07	0.4063	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	PPIG--ITGA6	8	14	PPIG	1560	chr2:170441409:+	ITGA6	22139	chr2:173330267:+	ONLY_REF_SPLICE	YES	38	108	0.37	0.17	0.0956	0.1673	PPIG->chr2:170440850-170497916:+,peptidylprolyl_isomerase_G,ITGA6->chr2:173292082-173371181:+,integrin_subunit_alpha_6	CL14_LARGE_INTESTINE	0.17	0.37	0.2629	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	3	33	FGFRL1	8146	chr4:1019672:+	IGF2	22999	chr11:2152999:-	INCL_NON_REF_SPLICE	YES	488	6115	0.07	0.01	0.0359	0.3944	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0.01	0.07	0.4303	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	29	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	17	0	0.66	1	0.0478	0.3466	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.66	1	0.3944	FALSE	344	826	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	VPS54--WDPCP	10	3	VPS54	19028	chr2:64144034:-	WDPCP	38453	chr2:63720074:-	ONLY_REF_SPLICE	YES	6	0	0.68	1	0.1195	0.0359	NEIGHBORS[64303],VPS54->VPS54,_GARP_complex_subunit,chr2:64119280-64246206:-,WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-	CL14_LARGE_INTESTINE	0.68	1	0.1554	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	3	29	FGFRL1	8547	chr4:1020073:+	IGF2	23101	chr11:2152897:-	INCL_NON_REF_SPLICE	YES	198	6934	0.14	0	0.0359	0.3466	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0	0.14	0.3825	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	25	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	16	0	0.64	1	0.0478	0.2988	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.64	1	0.3466	FALSE	344	826	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	25	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12	0	0.71	1	0.0478	0.2988	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.71	1	0.3466	FALSE	344	826	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	4	22	FGFRL1	8144	chr4:1019670:+	IGF2	23101	chr11:2152897:-	INCL_NON_REF_SPLICE	YES	401	6934	0.06	0	0.0478	0.2629	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0	0.06	0.3107	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	26	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	0	8	1	0.78	0.0359	0.3107	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL14_LARGE_INTESTINE	0.78	1	0.3466	FALSE	189	492	56	216	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	26	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	2812	0	0.01	1	0.0359	0.3107	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.01	1	0.3466	FALSE	344	827	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	C15orf57--CBX3	8	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	36	13	0.27	0.5	0.0956	0.0598	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CL14_LARGE_INTESTINE	0.27	0.5	0.1554	TRUE	267	562	48	632	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	4	21	FGFRL1	8547	chr4:1020073:+	IGF2	23140	chr11:2152858:-	INCL_NON_REF_SPLICE	NO	198	6909	0.11	0	0.0478	0.251	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0	0.11	0.2988	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	25	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	19	0	0.6	1	0.0359	0.2988	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.6	1	0.3347	FALSE	344	827	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	7	8	FGFRL1	7821	chr4:1019347:+	IGF2	23159	chr11:2152839:-	INCL_NON_REF_SPLICE	YES	428	7354	0.03	0	0.0837	0.0956	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0	0.03	0.1793	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	20	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	5	1	0.83	0.96	0.0478	0.239	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL14_LARGE_INTESTINE	0.83	0.96	0.2868	FALSE	189	492	56	216	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	NIPA2--POLA1	9	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1076	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	CL14_LARGE_INTESTINE	1	1	0.1076	TRUE	46	1352	75	139	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	3	23	FGFRL1	8518	chr4:1020044:+	IGF2	23133	chr11:2152865:-	INCL_NON_REF_SPLICE	YES	205	6757	0.11	0	0.0359	0.2749	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0	0.11	0.3108	TRUE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND6--MT-TE	7	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0837	0.0837	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL14_LARGE_INTESTINE	1	1	0.1674	FALSE	499	1288	110	792	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND6--MT-TE	8	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0956	0.0359	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL14_LARGE_INTESTINE	1	1	0.1315	FALSE	499	1288	110	792	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	5	14	FGFRL1	8124	chr4:1019650:+	IGF2	23162	chr11:2152836:-	INCL_NON_REF_SPLICE	NO	379	7295	0.05	0	0.0598	0.1673	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0	0.05	0.2271	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	22	MT-ND4	1192	chrM:10951:+	MT-ND4L	5664	chrM:10755:+	INCL_NON_REF_SPLICE	YES	18	0	0.58	1	0.0359	0.2629	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.58	1	0.2988	FALSE	344	826	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-TA--MT-TC	8	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0956	0.012	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CL14_LARGE_INTESTINE	1	1	0.1076	FALSE	462	80	0	856	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FTH1--ACTB	8	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0956	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	CL14_LARGE_INTESTINE	1	1	0.0956	TRUE	1	0	0	97	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-CO3--MT-ATP6	8	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0956	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL14_LARGE_INTESTINE	1	1	0.0956	FALSE	189	492	56	216	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	3	19	FGFRL1	8322	chr4:1019848:+	IGF2	23138	chr11:2152860:-	INCL_NON_REF_SPLICE	NO	467	6862	0.04	0	0.0359	0.2271	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0	0.04	0.263	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-CO3--MT-ATP6	7	1	MT-CO3	1182	chrM:9388:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	8	0	0.5	1	0.0837	0.012	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL14_LARGE_INTESTINE	0.5	1	0.0957	FALSE	189	492	56	216	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	13	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	21	0	0.45	1	0.0478	0.1554	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.45	1	0.2032	FALSE	344	827	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND6--MT-TE	3	17	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0.2032	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL14_LARGE_INTESTINE	1	1	0.2391	FALSE	499	1288	110	792	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	BEND3--RP1-60O19.1	6	3	BEND3	5222	chr6:107419755:-	RP1-60O19.1	25658	chr6:107195163:-	ONLY_REF_SPLICE	YES	2	3	0.82	0.75	0.0717	0.0359	BEND3->BEN_domain_containing_3,chr6:107386386-107436473:-,RP1-60O19.1->chr6:107165327-107235416:-	CL14_LARGE_INTESTINE	0.75	0.82	0.1076	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	RP11-680G10.1--GSE1	6	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	32	1	0.2	0.0717	0.0239	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CL14_LARGE_INTESTINE	0.2	1	0.0956	TRUE	465	1949	224	605	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	DGKH--AKAP11	6	1	DGKH	2300	chr13:42623101:+	AKAP11	68431	chr13:42882590:+	ONLY_REF_SPLICE	YES	0	25	1	0.22	0.0717	0.012	NEIGHBORS[15575],DGKH->chr13:42614176-42830714:+,diacylglycerol_kinase_eta,AKAP11->A-kinase_anchoring_protein_11,chr13:42846289-42897396:+	CL14_LARGE_INTESTINE	0.22	1	0.0837	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-CO3--MT-ATP6	6	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0717	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL14_LARGE_INTESTINE	1	1	0.0717	FALSE	189	492	56	216	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0717	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	1	1	0.0717	FALSE	344	821	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	6	MT-ND4	1031	chrM:10790:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	3	0	0.77	1	0.0478	0.0717	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	0.77	1	0.1195	FALSE	344	821	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	4	5	FGFRL1	7820	chr4:1019346:+	IGF2	23229	chr11:2152769:-	INCL_NON_REF_SPLICE	NO	419	6446	0.02	0	0.0478	0.0598	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0	0.02	0.1076	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND6--MT-TE	3	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0.1076	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL14_LARGE_INTESTINE	1	1	0.1435	FALSE	499	1288	110	792	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND6--MT-TE	3	9	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0.1076	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CL14_LARGE_INTESTINE	1	1	0.1435	FALSE	499	1288	110	792	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	4	4	FGFRL1	7814	chr4:1019340:+	IGF2	23274	chr11:2152724:-	INCL_NON_REF_SPLICE	NO	377	4724	0.02	0	0.0478	0.0478	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0	0.02	0.0956	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	5	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	1	1	0.0598	FALSE	344	821	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-TA--MT-TC	3	8	MT-TA	1051	chrM:5605:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0.0956	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CL14_LARGE_INTESTINE	1	1	0.1315	FALSE	462	80	0	856	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0598	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	1	1	0.0598	FALSE	0	0	0	189	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	BEND3--RP1-60O19.1	3	7	BEND3	5222	chr6:107419755:-	RP1-60O19.1	22088	chr6:107204136:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.0359	0.0837	BEND3->BEN_domain_containing_3,chr6:107386386-107436473:-,RP1-60O19.1->chr6:107165327-107235416:-	CL14_LARGE_INTESTINE	0.83	1	0.1196	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	VPS54--WDPCP	4	2	VPS54	17964	chr2:64147017:-	WDPCP	38453	chr2:63720074:-	ONLY_REF_SPLICE	YES	12	0	0.33	1	0.0478	0.0239	NEIGHBORS[64303],VPS54->VPS54,_GARP_complex_subunit,chr2:64119280-64246206:-,WDPCP->WD_repeat_containing_planar_cell_polarity_effector,chr2:63348518-64054977:-	CL14_LARGE_INTESTINE	0.33	1	0.0717	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	5	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0.0598	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	CL14_LARGE_INTESTINE	1	1	0.0957	FALSE	344	821	44	306	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	DLG1--MFI2	3	4	DLG1	5122	chr3:197009550:-	MFI2	45514	chr3:196754781:-	ONLY_REF_SPLICE	YES	44	23	0.14	0.23	0.0359	0.0478	NEIGHBORS[12744],DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component,MFI2->chr3:196715492-196756687:-	CL14_LARGE_INTESTINE	0.14	0.23	0.0837	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	EEA1--RP11-511B23.2	1	12	EEA1	1289	chr12:93322819:-	RP11-511B23.2	47667	chr12:93524909:-	ONLY_REF_SPLICE	YES	7	0	0.65	1	0.012	0.1434	LOCAL_REARRANGEMENT:-:[74084],EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,RP11-511B23.2->chr12:93397191-93609455:-	CL14_LARGE_INTESTINE	0.65	1	0.1554	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	3	4	FGFRL1	7787	chr4:1019313:+	IGF2	23215	chr11:2152783:-	INCL_NON_REF_SPLICE	YES	305	6590	0.02	0	0.0359	0.0478	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0	0.02	0.0837	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0478	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL14_LARGE_INTESTINE	1	1	0.0478	FALSE	189	492	56	216	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	REV3L--RPL28	4	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0478	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CL14_LARGE_INTESTINE	1	1	0.0478	TRUE	22	156	2	142	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	FGFRL1--IGF2	3	3	FGFRL1	7528	chr4:1019054:+	IGF2	22942	chr11:2153056:-	INCL_NON_REF_SPLICE	YES	184	5708	0.03	0	0.0359	0.0359	FGFRL1->chr4:1003724-1020685:+,fibroblast_growth_factor_receptor-like_1,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	CL14_LARGE_INTESTINE	0	0.03	0.0718	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	EEA1--RP11-511B23.2	1	10	EEA1	1289	chr12:93322819:-	RP11-511B23.2	48813	chr12:93521902:-	ONLY_REF_SPLICE	YES	7	0	0.61	1	0.012	0.1195	LOCAL_REARRANGEMENT:-:[74084],EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,RP11-511B23.2->chr12:93397191-93609455:-	CL14_LARGE_INTESTINE	0.61	1	0.1315	TRUE	0	0	0	1	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	6	0	0.45	1	0.0359	0.0239	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	CL14_LARGE_INTESTINE	0.45	1	0.0598	FALSE	189	492	56	216	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	PVT1--MYC	3	2	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	27	179	0.16	0.03	0.0359	0.0239	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CL14_LARGE_INTESTINE	0.03	0.16	0.0598	TRUE	3	14	0	24	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	CMTM8--CMTM7	3	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0359	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	CL14_LARGE_INTESTINE	1	1	0.0359	FALSE	118	557	29	88	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	EREG--RPS28	3	0	EREG	1134	chr4:75230993:+	RPS28	13492	chr19:8386407:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	EREG->chr4:75230860-75254468:+,epiregulin,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CL14_LARGE_INTESTINE	1	1	0.0359	TRUE	0	0	0	3	0	TRUE	ACH-000342
CL14_LARGE_INTESTINE	HSP90AB1--MT-RNR2	3	0	HSP90AB1	4415	chr6:44218238:+	MT-RNR2	11389	chrM:2262:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CL14_LARGE_INTESTINE	1	1	0.0359	FALSE	0	0	0	11	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	MT-ND3--MT-RNR2	3	0	MT-ND3	1094	chrM:10152:+	MT-RNR2	4904	chrM:2228:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	LOCAL_REARRANGEMENT:+:[6830],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CL14_LARGE_INTESTINE	1	1	0.0359	FALSE	4	8	5	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	YBX3--MT-CO3	3	0	YBX3	1219	chr12:10875693:-	MT-CO3	20797	chrM:9412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0359	0	YBX3->Y-box_binding_protein_3,chr12:10851683-10875911:-,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	CL14_LARGE_INTESTINE	1	1	0.0359	FALSE	25	0	0	6	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	PVT1--MYC	2	2	PVT1	1202	chr8:128806980:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	27	175	0.13	0.02	0.0239	0.0239	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	CL14_LARGE_INTESTINE	0.02	0.13	0.0478	TRUE	3	14	0	24	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	DLG1--MFI2	1	3	DLG1	5122	chr3:197009550:-	MFI2	46665	chr3:196753630:-	ONLY_REF_SPLICE	NO	44	16	0.08	0.2	0.012	0.0359	NEIGHBORS[12744],DLG1->Oncogene{Bushman},chr3:196769431-197026171:-,discs_large_homolog_1,_scribble_cell_polarity_complex_component,MFI2->chr3:196715492-196756687:-	CL14_LARGE_INTESTINE	0.08	0.2	0.0479	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	11	1	0.21	0.012	0.0239	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CL14_LARGE_INTESTINE	0.21	1	0.0359	TRUE	458	1351	185	561	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	EPSTI1--DNAJC15	1	1	EPSTI1	10920	chr13:43491677:-	DNAJC15	23608	chr13:43652748:+	ONLY_REF_SPLICE	YES	35	288	0.05	0.01	0.012	0.012	LOCAL_INVERSION:-:+:[30932],EPSTI1->chr13:43460524-43566407:-,epithelial_stromal_interaction_1_(breast),DNAJC15->DnaJ_heat_shock_protein_family_(Hsp40)_member_C15,chr13:43597339-43683045:+	CL14_LARGE_INTESTINE	0.01	0.05	0.024	FALSE	0	0	0	1	0	FALSE	ACH-000342
CL14_LARGE_INTESTINE	TMEM181--DYNLT1	1	1	TMEM181	6914	chr6:159010814:+	DYNLT1	25977	chr6:159062392:-	ONLY_REF_SPLICE	YES	53	3	0.04	0.4	0.012	0.012	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Testis=1},LOCAL_INVERSION:+:-:[1046],TMEM181->chr6:158957468-159056460:+,transmembrane_protein_181,DYNLT1->chr6:159057506-159065771:-,dynein_light_chain_Tctex-type_1	CL14_LARGE_INTESTINE	0.04	0.4	0.024	TRUE	0	2	0	2	0	TRUE	ACH-000342
CHP126_AUTONOMIC_GANGLIA	DDX1--HNRNPA1	411	0	DDX1	21762	chr2:15770231:+	HNRNPA1	29401	chr12:54677611:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	4.0678	0	DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+,HNRNPA1->chr12:54673977-54680872:+,heterogeneous_nuclear_ribonucleoprotein_A1	CHP126_AUTONOMIC_GANGLIA	1	1	4.0678	TRUE	0	0	0	1	0	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	UBQLN1--GKAP1	343	85	UBQLN1	1704	chr9:86322415:-	GKAP1	31396	chr9:86368274:-	ONLY_REF_SPLICE	YES	114	31	0.79	0.93	3.3948	0.8413	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[31218],UBQLN1->chr9:86274878-86323118:-,ubiquilin_1,GKAP1->G_kinase_anchoring_protein_1,chr9:86354336-86444431:-	CHP126_AUTONOMIC_GANGLIA	0.79	0.93	4.2361	TRUE	0	0	0	2	0	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMS--PTMA	358	2	PTMS	4182	chr12:6879165:+	PTMA	13146	chr2:232576646:+	INCL_NON_REF_SPLICE	YES	414	4374	0.47	0.08	3.5432	0.0198	GTEx&tcga_normals:1/3694=0.03%,PTMS->chr12:6874682-6880116:+,parathymosin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CHP126_AUTONOMIC_GANGLIA	0.08	0.47	3.563	TRUE	0	1	0	1	1	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMA--PTMS	316	3	PTMA	6054	chr2:232576687:+	PTMS	13756	chr12:6879121:+	INCL_NON_REF_SPLICE	YES	4355	303	0.07	0.51	3.1276	0.0297	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CHP126_AUTONOMIC_GANGLIA	0.07	0.51	3.1573	TRUE	0	0	0	16	0	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	170	35	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	1.6825	0.3464	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CHP126_AUTONOMIC_GANGLIA	1	1	2.0289	TRUE	508	994	45	981	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	TIMM23--RP11-464F9.1	92	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	141	3	0.4	0.97	0.9106	0.0198	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CHP126_AUTONOMIC_GANGLIA	0.4	0.97	0.9304	TRUE	519	3926	326	965	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	ZNF654--HMGB2	70	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6928	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CHP126_AUTONOMIC_GANGLIA	1	1	0.6928	TRUE	0	0	0	518	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMS--PTMA	59	2	PTMS	4182	chr12:6879165:+	PTMA	13158	chr2:232576658:+	INCL_NON_REF_SPLICE	YES	414	4052	0.13	0.01	0.5839	0.0198	GTEx&tcga_normals:1/3694=0.03%,PTMS->chr12:6874682-6880116:+,parathymosin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CHP126_AUTONOMIC_GANGLIA	0.01	0.13	0.6037	TRUE	0	1	0	1	1	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	UBQLN1--GKAP1	16	89	UBQLN1	1704	chr9:86322415:-	GKAP1	30243	chr9:86383885:-	ONLY_REF_SPLICE	YES	114	24	0.48	0.81	0.1584	0.8809	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:-:[31218],UBQLN1->chr9:86274878-86323118:-,ubiquilin_1,GKAP1->G_kinase_anchoring_protein_1,chr9:86354336-86444431:-	CHP126_AUTONOMIC_GANGLIA	0.48	0.81	1.0393	TRUE	0	0	0	1	0	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	32	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3167	0.0396	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHP126_AUTONOMIC_GANGLIA	1	1	0.3563	FALSE	499	1288	110	792	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-TA--MT-TC	32	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3167	0.0198	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CHP126_AUTONOMIC_GANGLIA	1	1	0.3365	FALSE	462	80	0	856	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	31	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3068	0.0495	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CHP126_AUTONOMIC_GANGLIA	1	1	0.3563	TRUE	477	1352	189	275	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NBAS--DDX1	25	19	NBAS	5992	chr2:15691617:-	DDX1	69523	chr2:15743316:+	ONLY_REF_SPLICE	YES	27	15730	0.62	0	0.2474	0.188	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	CHP126_AUTONOMIC_GANGLIA	0	0.62	0.4354	TRUE	0	0	0	2	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMA--PTMS	29	1	PTMA	6054	chr2:232576687:+	PTMS	13973	chr12:6879338:+	INCL_NON_REF_SPLICE	YES	4355	285	0.01	0.1	0.287	0.0099	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CHP126_AUTONOMIC_GANGLIA	0.01	0.1	0.2969	TRUE	0	0	0	16	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	23	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2721	0	0.01	1	0.2276	0.0198	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHP126_AUTONOMIC_GANGLIA	0.01	1	0.2474	FALSE	13	9	0	364	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-TL1	20	10	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1979	0.099	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	CHP126_AUTONOMIC_GANGLIA	1	1	0.2969	FALSE	210	95	5	49	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	OR51S1--TP53I11	20	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1979	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	CHP126_AUTONOMIC_GANGLIA	1	1	0.1979	TRUE	402	216	10	229	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-TL1--MT-RNR2	18	0	MT-TL1	1031	chrM:3260:+	MT-RNR2	5595	chrM:3190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1782	0	LOCAL_REARRANGEMENT:+:[1],MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G),MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHP126_AUTONOMIC_GANGLIA	1	1	0.1782	FALSE	7	521	16	32	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-TL1	5	51	MT-ND1	1094	chrM:3400:+	MT-TL1	4988	chrM:3261:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0495	0.5048	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	CHP126_AUTONOMIC_GANGLIA	0.98	1	0.5543	FALSE	210	95	5	49	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMS--PTMA	17	2	PTMS	4189	chr12:6879172:+	PTMA	12584	chr2:232576084:+	INCL_NON_REF_SPLICE	YES	500	4349	0.04	0	0.1683	0.0198	GTEx&tcga_normals:1/3694=0.03%,PTMS->chr12:6874682-6880116:+,parathymosin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CHP126_AUTONOMIC_GANGLIA	0	0.04	0.1881	TRUE	0	1	0	1	1	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NBAS--AC010729.1	15	7	NBAS	5992	chr2:15691617:-	AC010729.1	63986	chr2:5841598:+	ONLY_REF_SPLICE	YES	27	16	0.45	0.58	0.1485	0.0693	NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,AC010729.1->chr2:5836352-5848227:+	CHP126_AUTONOMIC_GANGLIA	0.45	0.58	0.2178	TRUE	0	0	0	1	0	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	16	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1584	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CHP126_AUTONOMIC_GANGLIA	1	1	0.1584	TRUE	465	1949	224	605	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	RP11-680G10.1--GSE1	15	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	24	1	0.4	0.1485	0.0099	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CHP126_AUTONOMIC_GANGLIA	0.4	1	0.1584	TRUE	458	1351	185	561	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	14	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2749	0	0.01	1	0.1386	0.0198	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHP126_AUTONOMIC_GANGLIA	0.01	1	0.1584	FALSE	13	9	0	364	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMS--PTMA	14	2	PTMS	4184	chr12:6879167:+	PTMA	12576	chr2:232576076:+	INCL_NON_REF_SPLICE	NO	465	4618	0.03	0	0.1386	0.0198	GTEx&tcga_normals:1/3694=0.03%,PTMS->chr12:6874682-6880116:+,parathymosin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CHP126_AUTONOMIC_GANGLIA	0	0.03	0.1584	FALSE	0	1	0	1	1	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	AC104389.28--HBE1	13	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1287	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CHP126_AUTONOMIC_GANGLIA	1	1	0.1287	TRUE	0	16	0	53	13	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-RNR2	9	12	MT-ND1	1454	chrM:3760:+	MT-RNR2	5501	chrM:2215:+	INCL_NON_REF_SPLICE	YES	29	6049	0.42	0	0.0891	0.1188	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHP126_AUTONOMIC_GANGLIA	0	0.42	0.2079	FALSE	120	26	5	87	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	11	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1089	0.0396	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHP126_AUTONOMIC_GANGLIA	1	1	0.1485	FALSE	499	1288	110	792	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMA--PTMS	10	4	PTMA	6530	chr2:232577163:+	PTMS	13740	chr12:6879105:+	INCL_NON_REF_SPLICE	NO	3938	270	0	0.05	0.099	0.0396	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CHP126_AUTONOMIC_GANGLIA	0	0.05	0.1386	FALSE	0	0	0	16	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-RNR2	9	6	MT-ND1	1291	chrM:3597:+	MT-RNR2	5713	chrM:2427:+	INCL_NON_REF_SPLICE	YES	10	6842	0.6	0	0.0891	0.0594	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHP126_AUTONOMIC_GANGLIA	0	0.6	0.1485	FALSE	120	26	5	87	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMS--PTMA	10	2	PTMS	4191	chr12:6879174:+	PTMA	12565	chr2:232576065:+	INCL_NON_REF_SPLICE	NO	541	4867	0.02	0	0.099	0.0198	GTEx&tcga_normals:1/3694=0.03%,PTMS->chr12:6874682-6880116:+,parathymosin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CHP126_AUTONOMIC_GANGLIA	0	0.02	0.1188	FALSE	0	1	0	1	1	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMS--PTMA	10	2	PTMS	4190	chr12:6879173:+	PTMA	12579	chr2:232576079:+	INCL_NON_REF_SPLICE	YES	540	4531	0.02	0	0.099	0.0198	GTEx&tcga_normals:1/3694=0.03%,PTMS->chr12:6874682-6880116:+,parathymosin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CHP126_AUTONOMIC_GANGLIA	0	0.02	0.1188	TRUE	0	1	0	1	1	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-RNR2	7	13	MT-ND1	1450	chrM:3756:+	MT-RNR2	5497	chrM:2211:+	INCL_NON_REF_SPLICE	YES	27	5800	0.43	0	0.0693	0.1287	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHP126_AUTONOMIC_GANGLIA	0	0.43	0.198	FALSE	120	26	5	87	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-TL1	7	13	MT-ND1	1244	chrM:3550:+	MT-TL1	5020	chrM:3293:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0693	0.1287	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	CHP126_AUTONOMIC_GANGLIA	0.95	1	0.198	FALSE	210	95	5	49	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-RNR2	7	12	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	5	0	0.79	1	0.0693	0.1188	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHP126_AUTONOMIC_GANGLIA	0.79	1	0.1881	FALSE	114	26	4	85	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-RNR2	6	15	MT-ND1	1435	chrM:3741:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	16	0	0.57	1	0.0594	0.1485	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHP126_AUTONOMIC_GANGLIA	0.57	1	0.2079	FALSE	114	26	4	85	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-TL1	9	1	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0891	0.0099	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	CHP126_AUTONOMIC_GANGLIA	1	1	0.099	FALSE	210	95	5	49	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-RNR2	6	11	MT-ND1	1297	chrM:3603:+	MT-RNR2	5502	chrM:2216:+	INCL_NON_REF_SPLICE	YES	10	6101	0.63	0	0.0594	0.1089	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHP126_AUTONOMIC_GANGLIA	0	0.63	0.1683	FALSE	120	26	5	87	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-RNR2	6	11	MT-ND1	1227	chrM:3533:+	MT-RNR2	5001	chrM:1715:+	INCL_NON_REF_SPLICE	YES	6	0	0.74	1	0.0594	0.1089	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHP126_AUTONOMIC_GANGLIA	0.74	1	0.1683	FALSE	114	26	4	85	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NBAS--DDX1	6	10	NBAS	5992	chr2:15691617:-	DDX1	73066	chr2:15747299:+	ONLY_REF_SPLICE	YES	27	18667	0.37	0	0.0594	0.099	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	CHP126_AUTONOMIC_GANGLIA	0	0.37	0.1584	TRUE	0	0	0	1	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NBAS--DDX1	6	9	NBAS	5992	chr2:15691617:-	DDX1	75266	chr2:15757368:+	ONLY_REF_SPLICE	YES	27	17885	0.36	0	0.0594	0.0891	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	CHP126_AUTONOMIC_GANGLIA	0	0.36	0.1485	TRUE	0	0	0	2	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NBAS--DDX1	3	19	NBAS	5992	chr2:15691617:-	DDX1	64684	chr2:15735269:+	ONLY_REF_SPLICE	YES	27	1325	0.45	0.02	0.0297	0.188	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	CHP126_AUTONOMIC_GANGLIA	0.02	0.45	0.2177	TRUE	0	0	0	1	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-RNR2	4	14	MT-ND1	1297	chrM:3603:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	10	0	0.64	1	0.0396	0.1386	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHP126_AUTONOMIC_GANGLIA	0.64	1	0.1782	FALSE	114	26	4	85	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	5	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0.099	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHP126_AUTONOMIC_GANGLIA	1	1	0.1485	FALSE	499	1288	110	792	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NPM1P24--SET	7	2	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	22	915	0.29	0.01	0.0693	0.0198	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CHP126_AUTONOMIC_GANGLIA	0.01	0.29	0.0891	FALSE	0	0	0	434	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NBAS--DDX1	5	9	NBAS	5992	chr2:15691617:-	DDX1	79473	chr2:15763560:+	ONLY_REF_SPLICE	YES	27	19073	0.34	0	0.0495	0.0891	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	CHP126_AUTONOMIC_GANGLIA	0	0.34	0.1386	TRUE	0	0	0	1	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMS--PTMA	7	1	PTMS	4137	chr12:6879120:+	PTMA	13133	chr2:232576633:+	INCL_NON_REF_SPLICE	NO	310	4501	0.03	0	0.0693	0.0099	GTEx&tcga_normals:1/3694=0.03%,PTMS->chr12:6874682-6880116:+,parathymosin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CHP126_AUTONOMIC_GANGLIA	0	0.03	0.0792	FALSE	0	1	0	1	1	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-RNR2	4	12	MT-ND1	1272	chrM:3578:+	MT-RNR2	4974	chrM:1688:+	INCL_NON_REF_SPLICE	YES	6	0	0.73	1	0.0396	0.1188	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHP126_AUTONOMIC_GANGLIA	0.73	1	0.1584	FALSE	114	26	4	85	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-RNR2	3	14	MT-ND1	1297	chrM:3603:+	MT-RNR2	4976	chrM:1690:+	INCL_NON_REF_SPLICE	YES	10	0	0.63	1	0.0297	0.1386	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHP126_AUTONOMIC_GANGLIA	0.63	1	0.1683	FALSE	114	26	4	85	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-TA--MT-TC	6	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0594	0.0198	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CHP126_AUTONOMIC_GANGLIA	1	1	0.0792	FALSE	462	80	0	856	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMS--PTMA	6	2	PTMS	4354	chr12:6879337:+	PTMA	13133	chr2:232576633:+	INCL_NON_REF_SPLICE	NO	296	4501	0.03	0	0.0594	0.0198	GTEx&tcga_normals:1/3694=0.03%,PTMS->chr12:6874682-6880116:+,parathymosin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CHP126_AUTONOMIC_GANGLIA	0	0.03	0.0792	FALSE	0	1	0	1	1	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-RNR2	4	9	MT-ND1	1203	chrM:3509:+	MT-RNR2	5501	chrM:2215:+	INCL_NON_REF_SPLICE	YES	8	6049	0.62	0	0.0396	0.0891	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHP126_AUTONOMIC_GANGLIA	0	0.62	0.1287	FALSE	120	26	5	87	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	REV3L--RPL28	6	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0594	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CHP126_AUTONOMIC_GANGLIA	1	1	0.0594	TRUE	22	156	2	142	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NBAS--DDX1	1	19	NBAS	7126	chr2:15679347:-	DDX1	66734	chr2:15737499:+	ONLY_REF_SPLICE	YES	45	13138	0.31	0	0.0099	0.188	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	CHP126_AUTONOMIC_GANGLIA	0	0.31	0.1979	TRUE	0	0	0	1	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMA--PTMS	5	3	PTMA	6060	chr2:232576693:+	PTMS	13958	chr12:6879323:+	ONLY_REF_SPLICE	YES	4762	397	0	0.02	0.0495	0.0297	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CHP126_AUTONOMIC_GANGLIA	0	0.02	0.0792	FALSE	0	0	0	16	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	5	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0495	0.0297	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CHP126_AUTONOMIC_GANGLIA	1	1	0.0792	TRUE	274	363	69	150	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-RNR2	4	6	MT-ND1	1462	chrM:3768:+	MT-RNR2	5687	chrM:2401:+	INCL_NON_REF_SPLICE	YES	33	8041	0.23	0	0.0396	0.0594	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHP126_AUTONOMIC_GANGLIA	0	0.23	0.099	FALSE	120	26	5	87	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-RNR2	4	6	MT-ND1	1272	chrM:3578:+	MT-RNR2	5546	chrM:2260:+	INCL_NON_REF_SPLICE	YES	6	6218	0.62	0	0.0396	0.0594	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHP126_AUTONOMIC_GANGLIA	0	0.62	0.099	FALSE	120	26	5	87	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMS--PTMA	5	2	PTMS	4190	chr12:6879173:+	PTMA	13112	chr2:232576612:+	INCL_NON_REF_SPLICE	YES	540	4681	0.01	0	0.0495	0.0198	GTEx&tcga_normals:1/3694=0.03%,PTMS->chr12:6874682-6880116:+,parathymosin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CHP126_AUTONOMIC_GANGLIA	0	0.01	0.0693	FALSE	0	1	0	1	1	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMS--PTMA	5	2	PTMS	4185	chr12:6879168:+	PTMA	13110	chr2:232576610:+	INCL_NON_REF_SPLICE	NO	465	4646	0.01	0	0.0495	0.0198	GTEx&tcga_normals:1/3694=0.03%,PTMS->chr12:6874682-6880116:+,parathymosin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CHP126_AUTONOMIC_GANGLIA	0	0.01	0.0693	FALSE	0	1	0	1	1	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0495	0.0099	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CHP126_AUTONOMIC_GANGLIA	0.67	1	0.0594	FALSE	292	1546	117	613	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND1--MT-TL1	5	0	MT-ND1	1068	chrM:3374:+	MT-TL1	5030	chrM:3303:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0495	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	CHP126_AUTONOMIC_GANGLIA	1	1	0.0495	FALSE	210	95	5	49	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMA--PTMS	4	4	PTMA	6060	chr2:232576693:+	PTMS	13753	chr12:6879118:+	INCL_NON_REF_SPLICE	NO	4762	302	0	0.03	0.0396	0.0396	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CHP126_AUTONOMIC_GANGLIA	0	0.03	0.0792	FALSE	0	0	0	16	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NBAS--DDX1	1	15	NBAS	5992	chr2:15691617:-	DDX1	70145	chr2:15743938:+	ONLY_REF_SPLICE	YES	27	16462	0.37	0	0.0099	0.1485	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	CHP126_AUTONOMIC_GANGLIA	0	0.37	0.1584	TRUE	0	0	0	2	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	4	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.32	1	0.0396	0.0297	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CHP126_AUTONOMIC_GANGLIA	0.32	1	0.0693	FALSE	125	705	46	456	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMA--PTMS	4	3	PTMA	6053	chr2:232576686:+	PTMS	13737	chr12:6879102:+	INCL_NON_REF_SPLICE	YES	4331	253	0	0.03	0.0396	0.0297	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CHP126_AUTONOMIC_GANGLIA	0	0.03	0.0693	FALSE	0	0	0	16	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	HSP90AB1--MT-RNR2	4	2	HSP90AB1	7266	chr6:44221089:+	MT-RNR2	10831	chrM:1704:+	INCL_NON_REF_SPLICE	YES	2805	0	0	1	0.0396	0.0198	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	CHP126_AUTONOMIC_GANGLIA	0	1	0.0594	FALSE	13	9	0	364	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMA--PTMS	4	2	PTMA	6054	chr2:232576687:+	PTMS	13958	chr12:6879323:+	INCL_NON_REF_SPLICE	NO	4355	397	0	0.01	0.0396	0.0198	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Pancreas=1,Lung=1,Stomach=1,Sarcomatoid=1},PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,PTMS->chr12:6874682-6880116:+,parathymosin	CHP126_AUTONOMIC_GANGLIA	0	0.01	0.0594	FALSE	0	0	0	16	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMS--PTMA	4	2	PTMS	4184	chr12:6879167:+	PTMA	13136	chr2:232576636:+	INCL_NON_REF_SPLICE	NO	465	4422	0.01	0	0.0396	0.0198	GTEx&tcga_normals:1/3694=0.03%,PTMS->chr12:6874682-6880116:+,parathymosin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CHP126_AUTONOMIC_GANGLIA	0	0.01	0.0594	FALSE	0	1	0	1	1	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMS--PTMA	4	2	PTMS	4188	chr12:6879171:+	PTMA	12574	chr2:232576074:+	INCL_NON_REF_SPLICE	YES	485	4655	0.01	0	0.0396	0.0198	GTEx&tcga_normals:1/3694=0.03%,PTMS->chr12:6874682-6880116:+,parathymosin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CHP126_AUTONOMIC_GANGLIA	0	0.01	0.0594	FALSE	0	1	0	1	1	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	SOX11--NBAS	4	2	SOX11	4627	chr2:5836425:+	NBAS	14917	chr2:15696943:-	INCL_NON_REF_SPLICE	YES	192	1149	0.03	0.01	0.0396	0.0198	SOX11->Oncogene{Bushman},SRY-box_11,chr2:5832799-5841516:+,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence	CHP126_AUTONOMIC_GANGLIA	0.01	0.03	0.0594	FALSE	0	0	0	1	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NBAS--DDX1	2	9	NBAS	5992	chr2:15691617:-	DDX1	76203	chr2:15758305:+	ONLY_REF_SPLICE	YES	27	19355	0.29	0	0.0198	0.0891	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	CHP126_AUTONOMIC_GANGLIA	0	0.29	0.1089	TRUE	0	0	0	2	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	3	5	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	23	0	0.26	1	0.0297	0.0495	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CHP126_AUTONOMIC_GANGLIA	0.26	1	0.0792	FALSE	164	806	69	479	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMS--PTMA	4	1	PTMS	4136	chr12:6879119:+	PTMA	13106	chr2:232576606:+	INCL_NON_REF_SPLICE	NO	306	4779	0.02	0	0.0396	0.0099	GTEx&tcga_normals:1/3694=0.03%,PTMS->chr12:6874682-6880116:+,parathymosin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CHP126_AUTONOMIC_GANGLIA	0	0.02	0.0495	FALSE	0	1	0	1	1	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMS--PTMA	4	1	PTMS	4142	chr12:6879125:+	PTMA	13124	chr2:232576624:+	INCL_NON_REF_SPLICE	NO	315	4434	0.02	0	0.0396	0.0099	GTEx&tcga_normals:1/3694=0.03%,PTMS->chr12:6874682-6880116:+,parathymosin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CHP126_AUTONOMIC_GANGLIA	0	0.02	0.0495	FALSE	0	1	0	1	1	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	SOX11--NBAS	4	1	SOX11	4038	chr2:5835836:+	NBAS	15954	chr2:15694262:-	INCL_NON_REF_SPLICE	YES	239	1058	0.02	0	0.0396	0.0099	SOX11->Oncogene{Bushman},SRY-box_11,chr2:5832799-5841516:+,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence	CHP126_AUTONOMIC_GANGLIA	0	0.02	0.0495	FALSE	0	0	0	1	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND2--MT-TM	4	0	MT-ND2	1017	chrM:4486:+	MT-TM	5076	chrM:4435:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0396	0	LOCAL_REARRANGEMENT:+:[1],MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2,MT-TM->chrM:4402-4469:+,mitochondrially_encoded_tRNA_methionine	CHP126_AUTONOMIC_GANGLIA	1	1	0.0396	FALSE	74	23	0	9	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NBAS--DDX1	3	4	NBAS	5992	chr2:15691617:-	DDX1	80620	chr2:15767178:+	ONLY_REF_SPLICE	YES	27	20205	0.21	0	0.0297	0.0396	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	CHP126_AUTONOMIC_GANGLIA	0	0.21	0.0693	FALSE	0	0	0	1	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	SOX11--NBAS	3	4	SOX11	5634	chr2:5837432:+	NBAS	14917	chr2:15696943:-	INCL_NON_REF_SPLICE	YES	200	1149	0.03	0.01	0.0297	0.0396	SOX11->Oncogene{Bushman},SRY-box_11,chr2:5832799-5841516:+,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence	CHP126_AUTONOMIC_GANGLIA	0.01	0.03	0.0693	FALSE	0	0	0	1	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NPM1P24--SET	3	2	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	YES	22	840	0.19	0.01	0.0297	0.0198	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CHP126_AUTONOMIC_GANGLIA	0.01	0.19	0.0495	FALSE	0	0	0	434	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NPM1P24--SET	3	2	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	NO	22	830	0.19	0.01	0.0297	0.0198	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	CHP126_AUTONOMIC_GANGLIA	0.01	0.19	0.0495	FALSE	0	0	0	434	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	PTMS--PTMA	3	2	PTMS	4183	chr12:6879166:+	PTMA	13126	chr2:232576626:+	INCL_NON_REF_SPLICE	NO	462	4457	0.01	0	0.0297	0.0198	GTEx&tcga_normals:1/3694=0.03%,PTMS->chr12:6874682-6880116:+,parathymosin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CHP126_AUTONOMIC_GANGLIA	0	0.01	0.0495	FALSE	0	1	0	1	1	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	SOX11--NBAS	3	2	SOX11	4687	chr2:5836485:+	NBAS	14917	chr2:15696943:-	INCL_NON_REF_SPLICE	YES	196	1149	0.02	0	0.0297	0.0198	SOX11->Oncogene{Bushman},SRY-box_11,chr2:5832799-5841516:+,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence	CHP126_AUTONOMIC_GANGLIA	0	0.02	0.0495	FALSE	0	0	0	1	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	CPSF6--CHMP1A	3	1	CPSF6	11046	chr12:69656342:+	CHMP1A	24671	chr16:89713739:-	ONLY_REF_SPLICE	YES	100	158	0.04	0.02	0.0297	0.0099	GTEx&tcga_normals:9/3694=0.24%,GTEx:0.08%,GTEx_FI:{Skin=[count:18=pct:5.7],Adipose_Tissue=[count:15=pct:5.0],Blood_Vessel=[count:13=pct:3.5],Thyroid=[count:11=pct:6.2],Breast=[count:9=pct:8.1],Lung=[count:8=pct:4.8],Brain=[count:8=pct:1.2],Colon=[count:5=pct:2.6],Uterus=[count:5=pct:11.6],Esophagus=[count:5=pct:1.2],Ovary=[count:5=pct:9.4],Prostate=[count:4=pct:6.6],Blood=[count:4=pct:2.3],Nerve=[count:4=pct:2.4],Testis=[count:3=pct:2.9],Spleen=[count:3=pct:2.7],Stomach=[count:2=pct:2.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Kidney=[count:1=pct:7.1],Muscle=[count:1=pct:0.4],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Cervix_Uteri=[count:1=pct:12.5]},GTEx_v2:{count=140;pct=1.62%;dist=Skin_-_Sun_Exposed_(Lower_leg)=20,Skin_-_Not_Sun_Exposed_(Suprapubic)=11,Ovary=10,Breast_-_Mammary_Tissue=9,Thyroid=9,Artery_-_Tibial=6,Lung=6,Prostate=6,Uterus=5,Adipose_-_Visceral_(Omentum)=5,Adipose_-_Subcutaneous=5,Artery_-_Coronary=4,Colon_-_Transverse=4,Esophagus_-_Mucosa=3,Brain_-_Cerebellar_Hemisphere=3,Colon_-_Sigmoid=3,Testis=3,Cells_-_Transformed_fibroblasts=3,Small_Intestine_-_Terminal_Ileum=2,Vagina=2,Nerve_-_Tibial=2,Adrenal_Gland=2,Esophagus_-_Gastroesophageal_Junction=2,Whole_Blood=2,Brain_-_Cerebellum=2,Stomach=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Pancreas=1,Kidney_-_Cortex=1,Liver=1,Cervix_-_Ectocervix=1,Pituitary=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Spleen=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	CHP126_AUTONOMIC_GANGLIA	0.02	0.04	0.0396	TRUE	95	74	6	34	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	CPSF6--C9orf3	3	0	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	CHP126_AUTONOMIC_GANGLIA	1	1	0.0297	TRUE	53	99	2	44	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	DDX1--HNRNPA1	3	0	DDX1	22456	chr2:15770925:+	HNRNPA1	29419	chr12:54677629:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+,HNRNPA1->chr12:54673977-54680872:+,heterogeneous_nuclear_ribonucleoprotein_A1	CHP126_AUTONOMIC_GANGLIA	1	1	0.0297	TRUE	0	0	0	1	0	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0297	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CHP126_AUTONOMIC_GANGLIA	1	1	0.0297	FALSE	499	1288	110	792	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	TIMM23B--LINC00843	2	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0.0198	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CHP126_AUTONOMIC_GANGLIA	1	1	0.0396	TRUE	62	24	1	171	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NBAS--DDX1	2	1	NBAS	1143	chr2:15701312:-	DDX1	75266	chr2:15757368:+	ONLY_REF_SPLICE	YES	1020	17885	0	0	0.0198	0.0099	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	CHP126_AUTONOMIC_GANGLIA	0	0	0.0297	FALSE	0	0	0	2	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	OIP5-AS1--CHP1	2	1	OIP5-AS1	3111	chr15:41578298:+	CHP1	32061	chr15:41570965:+	ONLY_REF_SPLICE	YES	137	54	0.02	0.05	0.0198	0.0099	LOCAL_REARRANGEMENT:+:[2145],OIP5-AS1->OIP5_antisense_RNA_1,chr15:41576188-41601901:+,CHP1->calcineurin_like_EF-hand_protein_1,chr15:41523037-41574043:+	CHP126_AUTONOMIC_GANGLIA	0.02	0.05	0.0297	TRUE	0	1	0	1	1	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	1	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	13900	chr12:24102595:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0099	0.0495	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CHP126_AUTONOMIC_GANGLIA	1	1	0.0594	TRUE	8	10	1	12	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	RP11-444D3.1--SOX5	1	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0099	0.0495	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CHP126_AUTONOMIC_GANGLIA	1	1	0.0594	TRUE	160	277	29	98	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	DFNB59--TDP1	2	0	DFNB59	1334	chr2:179316496:+	TDP1	32773	chr14:90485660:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	DFNB59->chr2:179316163-179326117:+,deafness,_autosomal_recessive_59,TDP1->chr14:90421283-90511106:+,tyrosyl-DNA_phosphodiesterase_1	CHP126_AUTONOMIC_GANGLIA	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	ELAVL3--MIOS	2	0	ELAVL3	1447	chr19:11591415:-	MIOS	19907	chr7:7622749:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	ELAVL3->ELAV_like_neuron-specific_RNA_binding_protein_3,chr19:11562141-11591861:-,MIOS->chr7:7606503-7648560:+,missing_oocyte,_meiosis_regulator,_homolog_(Drosophila)	CHP126_AUTONOMIC_GANGLIA	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NBAS--DDX1	1	4	NBAS	14867	chr2:15618350:-	DDX1	83168	chr2:15769726:+	ONLY_REF_SPLICE	NO	19	20176	0.21	0	0.0099	0.0396	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	CHP126_AUTONOMIC_GANGLIA	0	0.21	0.0495	FALSE	0	0	0	1	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	ZNF543--RP11-395B7.2	2	0	ZNF543	2490	chr19:57835176:+	RP11-395B7.2	14780	chr7:100607265:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0198	0	ZNF543->chr19:57831877-57842144:+,zinc_finger_protein_543,RP11-395B7.2->chr7:100606878-100611410:-	CHP126_AUTONOMIC_GANGLIA	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	RP11-1L12.3--SLC5A12	1	2	RP11-1L12.3	4887	chr11:27172597:-	SLC5A12	15124	chr11:26734253:-	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0099	0.0198	GTEx_FI:{Spleen=[count:2=pct:1.8],Nerve=[count:1=pct:0.6]},RP11-1L12.3->chr11:27068733-27241660:-,SLC5A12->chr11:26688566-26744974:-,solute_carrier_family_5_member_12	CHP126_AUTONOMIC_GANGLIA	0.75	1	0.0297	TRUE	3	101	0	60	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	AC104389.28--HBE1	1	1	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0099	0.0099	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	CHP126_AUTONOMIC_GANGLIA	1	1	0.0198	TRUE	0	48	0	65	48	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	ATP11A--CUL4A	1	1	ATP11A	34653	chr13:113530255:+	CUL4A	67191	chr13:113917801:+	ONLY_REF_SPLICE	YES	133	68	0.01	0.03	0.0099	0.0099	ATP11A->ATPase_phospholipid_transporting_11A,chr13:113344643-113541482:+,CUL4A->chr13:113862552-113919399:+,cullin_4A	CHP126_AUTONOMIC_GANGLIA	0.01	0.03	0.0198	FALSE	0	7	0	5	3	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NBAS--DDX1	1	1	NBAS	5992	chr2:15691617:-	DDX1	84342	chr2:15770900:+	ONLY_REF_SPLICE	YES	27	14283	0.07	0	0.0099	0.0099	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_INVERSION:-:+:[29848],NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,DDX1->DEAD/H-box_helicase_1,Oncogene{Bushman},chr2:15731302-15771235:+	CHP126_AUTONOMIC_GANGLIA	0	0.07	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	23	7	0.08	0.22	0.0099	0.0099	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CHP126_AUTONOMIC_GANGLIA	0.08	0.22	0.0198	FALSE	8	57	1	47	0	FALSE	ACH-000136
CHP126_AUTONOMIC_GANGLIA	RAD54L--AC010729.1	1	1	RAD54L	3031	chr1:46715791:+	AC010729.1	18858	chr2:5843699:+	ONLY_REF_SPLICE	YES	25	34	0.07	0.06	0.0099	0.0099	RAD54L->RAD54-like_(S._cerevisiae),chr1:46713360-46744145:+,AC010729.1->chr2:5836352-5848227:+	CHP126_AUTONOMIC_GANGLIA	0.06	0.07	0.0198	TRUE	0	0	0	1	0	FALSE	ACH-000136
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF3--PBX1	1244	325	TCF3	13408	chr19:1619110:-	PBX1	46216	chr1:164761731:+	ONLY_REF_SPLICE	YES	588	0	0.73	1	12.4391	3.2498	Cosmic{samples=197,mutations=26,papers=2},Mitelman{ALL=2,BL=2},chimerdb_pubmed{childhood preBcell acute lymphoblastic leukemia(ALL),Bcell precursor acute lymphoblastic leukemia,preBcell acute lymphoblastic leukemia,acute lymphoblastoid leukemia (ALL),acute lymphoblastic leukemia,Acute leukemia,acute lymphoblastic leukemia (ALL),lymphoma,acute lymphoblastic leukaemias (ALL),CML, ALL,childhood preB acute lymphoblastic leukemia (ALL),severalleukaemia,pediatric preBcell leukemia,acute lymphoblastic eukemia/lymphoma,Acute lymphoblastic leukaemia(ALL),leukemia,preB acute lymphoblastic leukemia (ALL),pediatric preB cell leukemia,acute leukemia,acute lymphoblastic leukemias,preB acute lymphoblastoid leukemias (ALL),acute lymphoblastic leukaemia (ALL),preB acute lymphoblastic leukemia, acute lymphoblastic leukemia (ALL),Several human leukemias,preBcell acute lymphocytic leukemia, acute myeloid leukemia},TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.73	1	15.6889	TRUE	0	0	0	4	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	140	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.3999	0.3	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.6999	TRUE	508	994	45	981	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	117	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1699	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1699	TRUE	0	0	0	518	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	101	36	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	37	35	0.79	0.8	1.0099	0.36	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	0.8	1.3699	TRUE	181	1564	124	196	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	79	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	118	5	0.41	0.94	0.7899	0.02	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.94	0.8099	TRUE	519	3926	326	965	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	48	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.48	0.07	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.55	FALSE	416	2512	207	587	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OR51S1--TP53I11	33	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.33	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.33	TRUE	402	216	10	229	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	27	0	ZNF654	1688	chr3:88188941:+	HMGB2	12544	chr4:174253295:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.27	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.27	TRUE	0	0	0	518	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF3--PBX1	22	6	TCF3	10234	chr19:1622396:-	PBX1	46419	chr1:164761934:+	INCL_NON_REF_SPLICE	YES	428	173	0.06	0.14	0.22	0.06	Cosmic{samples=197,mutations=26,papers=2},Mitelman{ALL=2,BL=2},chimerdb_pubmed{childhood preBcell acute lymphoblastic leukemia(ALL),Bcell precursor acute lymphoblastic leukemia,preBcell acute lymphoblastic leukemia,acute lymphoblastoid leukemia (ALL),acute lymphoblastic leukemia,Acute leukemia,acute lymphoblastic leukemia (ALL),lymphoma,acute lymphoblastic leukaemias (ALL),CML, ALL,childhood preB acute lymphoblastic leukemia (ALL),severalleukaemia,pediatric preBcell leukemia,acute lymphoblastic eukemia/lymphoma,Acute lymphoblastic leukaemia(ALL),leukemia,preB acute lymphoblastic leukemia (ALL),pediatric preB cell leukemia,acute leukemia,acute lymphoblastic leukemias,preB acute lymphoblastoid leukemias (ALL),acute lymphoblastic leukaemia (ALL),preB acute lymphoblastic leukemia, acute lymphoblastic leukemia (ALL),Several human leukemias,preBcell acute lymphocytic leukemia, acute myeloid leukemia},TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,PBX1->Oncogene{Bushman},chr1:164524821-164868533:+,pre-B-cell_leukemia_homeobox_1	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.14	0.28	TRUE	0	0	0	4	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV5-2	19	11	AC096579.7	1523	chr2:89165131:-	IGKV5-2	8682	chr2:89197005:+	ONLY_REF_SPLICE	YES	41	0	0.42	1	0.19	0.11	GTEx_FI:{Spleen=[count:6=pct:5.4],Small_Intestine=[count:2=pct:3.6],Colon=[count:1=pct:0.5],Thyroid=[count:1=pct:0.6]},LOCAL_INVERSION:-:+:[31095],AC096579.7->chr2:89130700-89165653:-,IGKV5-2->chr2:89196748-89197300:+,immunoglobulin_kappa_variable_5-2	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	1	0.3	TRUE	7	17	0	1	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC019118.3--AC019118.2	18	9	AC019118.3	1234	chr2:3149318:-	AC019118.2	8492	chr2:2970447:-	ONLY_REF_SPLICE	YES	62	0	0.3	1	0.18	0.09	NEIGHBORS[5555],AC019118.3->chr2:3135353-3149551:-,AC019118.2->chr2:2898820-3129798:-	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	1	0.27	FALSE	0	0	0	3	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	18	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.18	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.18	TRUE	46	1352	75	139	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.16	0.01	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.17	FALSE	499	1288	110	792	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	12	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.12	0.04	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.16	FALSE	462	80	0	856	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	12	1	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	19	8	0.41	0.62	0.12	0.01	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.62	0.13	TRUE	267	562	48	632	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	12	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.12	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.12	FALSE	125	705	46	456	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.09	0.07	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.16	FALSE	499	1288	110	792	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	9	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.09	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.09	FALSE	292	1546	117	613	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	9	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.09	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.09	TRUE	0	0	0	518	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444A22.1--AC007131.2	8	2	RP11-444A22.1	2236	chr2:60054281:-	AC007131.2	8658	chr2:59946792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.08	0.02	GTEx_FI:{Testis=[count:11=pct:10.5]},RP11-444A22.1->chr2:59445815-60327335:-,AC007131.2->chr2:59465851-59960531:-	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1	TRUE	0	0	1	2	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	7	3	CCDC26	6922	chr8:130365050:-	LINC00977	13259	chr8:130229652:-	INCL_NON_REF_SPLICE	YES	23	3	0.3	0.77	0.07	0.03	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.77	0.1	TRUE	0	0	0	6	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	7	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	2	0.67	0.8	0.07	0.01	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.8	0.08	FALSE	16	356	14	466	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	6	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.06	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.06	FALSE	46	201	11	112	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	5	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	75	0	0.1	1	0.05	0.03	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	1	0.08	FALSE	164	806	69	479	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0.01	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.06	FALSE	499	1288	110	792	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.92	1	0.03	0.09	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.12	FALSE	499	1288	110	792	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	5	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.05	TRUE	1	39	0	134	39	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0.04	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.08	FALSE	462	80	0	856	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	5	0	ZNF654	1688	chr3:88188941:+	HMGB2	12568	chr4:174253271:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.05	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.05	TRUE	0	0	0	518	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	1	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	19	9	0.21	0.36	0.04	0.01	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.36	0.05	TRUE	267	562	48	632	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	4	1	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	7	2	0.42	0.71	0.04	0.01	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.42	0.71	0.05	FALSE	0	9	0	55	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	4	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.04	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.04	FALSE	231	205	14	283	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2152M20.2--GOLPH3	3	2	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	1	21	0.83	0.19	0.03	0.02	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.19	0.83	0.05	TRUE	10	26	2	24	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--IGHV3-29	3	0	CPSF6	11046	chr12:69656342:+	IGHV3-29	20032	chr14:106787666:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.03	0	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,IGHV3-29->chr14:106787368-106787804:-,immunoglobulin_heavy_variable_3-29_(pseudogene)	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.03	TRUE	0	0	0	3	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND4--MT-ATP8	3	0	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.03	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.03	FALSE	231	217	16	283	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0.03	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.05	FALSE	515	4851	409	746	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0.01	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.03	TRUE	62	24	1	171	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--IRF2BP2	2	0	CPSF6	11046	chr12:69656342:+	IRF2BP2	21567	chr1:234743598:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1},CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,IRF2BP2->Oncogene{Bushman},chr1:234740015-234745271:-,interferon_regulatory_factor_2_binding_protein_2	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.02	TRUE	0	9	0	3	1	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--SRSF1	2	0	CPSF6	11046	chr12:69656342:+	SRSF1	22199	chr17:56082402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:1=pct:0.2],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Stomach=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},HGNC_GENEFAM,CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,SRSF1->chr17:56080721-56084707:-,serine/arginine-rich_splicing_factor_1	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.02	TRUE	2	7	0	12	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCUN1D2--TFDP1	2	0	DCUN1D2	1286	chr13:114144982:-	TFDP1	18891	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[93746],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.02	TRUE	0	1	0	6	1	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPM--ELAVL1	2	0	HNRNPM	1345	chr19:8509995:+	ELAVL1	24831	chr19:8056715:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	HGNC_GENEFAM,HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.02	TRUE	0	0	0	3	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NBAS--FAM49A	2	0	NBAS	5992	chr2:15691617:-	FAM49A	68667	chr2:16747035:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	GTEx&tcga_normals:1/3694=0.03%,NBAS->chr2:15307032-15701454:-,neuroblastoma_amplified_sequence,FAM49A->Oncogene{Bushman},chr2:16730727-16847599:-,family_with_sequence_similarity_49_member_A	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.02	TRUE	0	0	0	5	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PKN2--CORO1C	2	0	PKN2	1407	chr1:89150311:+	CORO1C	33293	chr12:109072170:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	PKN2->chr1:89149905-89301938:+,protein_kinase_N2,CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RBM26--SLAIN1	2	0	RBM26	1774	chr13:79979839:-	SLAIN1	37373	chr13:78317151:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	RBM26->RNA_binding_motif_protein_26,chr13:79885962-79980612:-,SLAIN1->SLAIN_motif_family_member_1,chr13:78272023-78338377:+	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM21--ATP6V0E1	2	0	TIMM21	1599	chr18:71816344:+	ATP6V0E1	13044	chr5:172461402:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.02	0	TIMM21->chr18:71815746-71826197:+,translocase_of_inner_mitochondrial_membrane_21,ATP6V0E1->ATPase_H+_transporting_V0_subunit_e1,chr5:172410760-172462448:+	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.02	TRUE	0	0	0	1	0	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP13-188A5.1--KLF8	1	2	RP13-188A5.1	1678	chrX:55935233:+	KLF8	7929	chrX:56276664:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.01	0.02	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.03	TRUE	10	78	6	20	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC019118.3--AC019118.2	1	1	AC019118.3	1234	chr2:3149318:-	AC019118.2	10978	chr2:2900452:-	ONLY_REF_SPLICE	NO	62	3	0.03	0.4	0.01	0.01	NEIGHBORS[5555],AC019118.3->chr2:3135353-3149551:-,AC019118.2->chr2:2898820-3129798:-	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.4	0.02	FALSE	0	0	0	3	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC26--LINC00977	1	1	CCDC26	2447	chr8:130587128:-	LINC00977	13259	chr8:130229652:-	ONLY_REF_SPLICE	YES	16	3	0.11	0.4	0.01	0.01	CCDC26->CCDC26_long_non-coding_RNA,chr8:130363937-130692485:-,LINC00977->chr8:130228713-130253496:-,long_intergenic_non-protein_coding_RNA_977	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.4	0.02	TRUE	0	2	0	11	2	TRUE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CERS6--STK39	1	1	CERS6	9432	chr2:169574488:+	STK39	29750	chr2:168986268:-	ONLY_REF_SPLICE	YES	48	291	0.04	0.01	0.01	0.01	GTEx_v2:{count=5;pct=0.06%;dist=Vagina=1,Cervix_-_Ectocervix=1,Adipose_-_Subcutaneous=1,Whole_Blood=1,Colon_-_Transverse=1},CERS6->ceramide_synthase_6,chr2:169312372-169631644:+,STK39->chr2:168810530-169104651:-,serine/threonine_kinase_39	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2152M20.2--GOLPH3	1	1	CTD-2152M20.2	1447	chr5:32121601:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	21	1	0.09	0.01	0.01	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.02	TRUE	6	16	0	6	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP2--CCNI	1	1	G3BP2	4364	chr4:76598392:-	CCNI	25977	chr4:77987558:-	ONLY_REF_SPLICE	YES	187	158	0.01	0.01	0.01	0.01	G3BP2->G3BP_stress_granule_assembly_factor_2,chr4:76567966-76649709:-,CCNI->chr4:77968311-77997158:-,cyclin_I	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HIF1A--FEM1B	1	1	HIF1A	1327	chr14:62162557:+	FEM1B	26195	chr15:68581945:+	ONLY_REF_SPLICE	YES	190	25	0.01	0.07	0.01	0.01	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,FEM1B->chr15:68570141-68588203:+,fem-1_homolog_B	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.07	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LCOR--PIK3AP1	1	1	LCOR	1140	chr10:98592156:+	PIK3AP1	26999	chr10:98416691:-	ONLY_REF_SPLICE	YES	3	298	0.4	0.01	0.01	0.01	GTEx_v2:{count=1;pct=0.01%;dist=Spleen=1},LCOR->chr10:98592017-98740800:+,ligand_dependent_nuclear_receptor_corepressor,PIK3AP1->chr10:98353069-98480271:-,phosphoinositide-3-kinase_adaptor_protein_1	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.4	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PAIP2--MATR3	1	1	PAIP2	4805	chr5:138700432:+	MATR3	37616	chr5:138665034:+	ONLY_REF_SPLICE	YES	539	406	0	0	0.01	0.01	LOCAL_REARRANGEMENT:+:[9916],PAIP2->chr5:138677276-138705406:+,poly(A)_binding_protein_interacting_protein_2,MATR3->chr5:138609441-138667360:+,matrin_3	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.02	FALSE	0	0	0	1	0	FALSE	ACH-000032
MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PHF7--CHMP1A	1	1	PHF7	4385	chr3:52448603:+	CHMP1A	17229	chr16:89713739:-	ONLY_REF_SPLICE	YES	17	162	0.11	0.01	0.01	0.01	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=7;pct=0.08%;dist=Esophagus_-_Mucosa=2,Ovary=1,Minor_Salivary_Gland=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Testis=1,Brain_-_Cortex=1},PHF7->PHD_finger_protein_7,chr3:52444673-52457657:+,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	MHHCALL3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.11	0.02	FALSE	1	3	0	2	1	FALSE	ACH-000032
RDES_BONE	EWSR1--FLI1	325	105	EWSR1	11554	chr22:29683123:+	FLI1	35098	chr11:128651853:+	ONLY_REF_SPLICE	YES	316	0	0.58	1	3.0138	0.9737	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	RDES_BONE	0.58	1	3.9875	TRUE	0	0	0	5	0	TRUE	ACH-000041
RDES_BONE	TIMM23B--LINC00843	125	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1591	0.1855	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RDES_BONE	1	1	1.3446	TRUE	508	994	45	981	0	FALSE	ACH-000041
RDES_BONE	RP11-680G10.1--GSE1	81	10	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	12	1	0.88	0.7511	0.0927	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RDES_BONE	0.88	1	0.8438	TRUE	458	1351	185	561	0	FALSE	ACH-000041
RDES_BONE	TIMM23--RP11-464F9.1	75	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.6955	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RDES_BONE	1	1	0.6955	TRUE	519	3926	326	965	0	FALSE	ACH-000041
RDES_BONE	MT-TA--MT-TN	70	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6491	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RDES_BONE	1	1	0.6491	FALSE	369	2501	205	193	0	FALSE	ACH-000041
RDES_BONE	MT-TA--MT-TC	54	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5008	0.0278	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RDES_BONE	1	1	0.5286	FALSE	462	80	0	856	0	FALSE	ACH-000041
RDES_BONE	ZNF654--HMGB2	41	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3802	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RDES_BONE	1	1	0.3802	TRUE	0	0	0	518	0	FALSE	ACH-000041
RDES_BONE	RP11-680G10.1--GSE1	29	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	48	1	0.39	0.2689	0.0185	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RDES_BONE	0.39	1	0.2874	TRUE	465	1949	224	605	0	FALSE	ACH-000041
RDES_BONE	MT-TA--MT-TN	12	64	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.1113	0.5935	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RDES_BONE	1	1	0.7048	FALSE	369	2501	205	193	0	FALSE	ACH-000041
RDES_BONE	MT-ND6--MT-TE	25	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.2318	0.0649	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RDES_BONE	0.97	1	0.2967	FALSE	499	1288	110	792	0	FALSE	ACH-000041
RDES_BONE	HSP90AB1--MT-RNR2	20	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1962	0	0.01	1	0.1855	0.0185	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RDES_BONE	0.01	1	0.204	FALSE	13	9	0	364	0	FALSE	ACH-000041
RDES_BONE	OR51S1--TP53I11	20	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1855	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	RDES_BONE	1	1	0.1855	TRUE	402	216	10	229	0	FALSE	ACH-000041
RDES_BONE	MT-TA--MT-TN	13	24	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1206	0.2226	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RDES_BONE	1	1	0.3432	FALSE	369	2501	205	193	0	FALSE	ACH-000041
RDES_BONE	MT-TA--MT-TN	7	45	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0.4173	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RDES_BONE	1	1	0.4822	FALSE	369	2501	205	193	0	FALSE	ACH-000041
RDES_BONE	MT-ND6--MT-TE	16	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.1484	0.0742	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RDES_BONE	0.96	1	0.2226	FALSE	499	1288	110	792	0	FALSE	ACH-000041
RDES_BONE	MT-TA--MT-TN	9	36	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0835	0.3338	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RDES_BONE	1	1	0.4173	FALSE	369	2501	205	193	0	FALSE	ACH-000041
RDES_BONE	HSP90AB1--MT-RNR2	16	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1958	0	0.01	1	0.1484	0.0185	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RDES_BONE	0.01	1	0.1669	FALSE	13	9	0	364	0	FALSE	ACH-000041
RDES_BONE	MT-ND6--MT-TE	11	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.102	0.1113	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RDES_BONE	0.92	1	0.2133	FALSE	499	1288	110	792	0	FALSE	ACH-000041
RDES_BONE	MT-TA--MT-TN	13	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1206	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RDES_BONE	1	1	0.1206	FALSE	369	2501	205	193	0	FALSE	ACH-000041
RDES_BONE	MT-TA--MT-TN	4	34	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0.3153	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RDES_BONE	1	1	0.3524	FALSE	369	2501	205	193	0	FALSE	ACH-000041
RDES_BONE	MT-CO3--MT-ATP6	11	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	4	0	0.76	1	0.102	0.0185	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RDES_BONE	0.76	1	0.1205	FALSE	189	492	56	216	0	FALSE	ACH-000041
RDES_BONE	MT-CO3--MT-ATP6	5	26	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.0464	0.2411	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RDES_BONE	0.89	1	0.2875	FALSE	189	492	56	216	0	FALSE	ACH-000041
RDES_BONE	MT-ND6--MT-TE	6	22	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.93	1	0.0556	0.204	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RDES_BONE	0.93	1	0.2596	FALSE	499	1288	110	792	0	FALSE	ACH-000041
RDES_BONE	RP11-444D3.1--SOX5	10	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.94	0.0927	0.0464	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	RDES_BONE	0.94	1	0.1391	TRUE	477	1352	189	275	0	FALSE	ACH-000041
RDES_BONE	MT-TA--MT-TN	10	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0927	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RDES_BONE	1	1	0.0927	FALSE	369	2501	205	193	0	FALSE	ACH-000041
RDES_BONE	PLXDC1--TAF13	10	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0927	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	RDES_BONE	1	1	0.0927	TRUE	7	10	0	216	0	FALSE	ACH-000041
RDES_BONE	MT-CO3--MT-ATP6	4	21	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	0	26	1	0.49	0.0371	0.1947	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RDES_BONE	0.49	1	0.2318	FALSE	189	492	56	216	0	FALSE	ACH-000041
RDES_BONE	LAS1L--NCL	9	0	LAS1L	13911	chrX:64737973:-	NCL	25282	chr2:232325470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0835	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	RDES_BONE	1	1	0.0835	TRUE	0	0	0	3	0	TRUE	ACH-000041
RDES_BONE	MT-ND6--MT-TE	4	17	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0371	0.1576	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RDES_BONE	0.95	1	0.1947	FALSE	499	1288	110	792	0	FALSE	ACH-000041
RDES_BONE	MT-TA--MT-TC	7	2	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0.0185	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RDES_BONE	1	1	0.0834	FALSE	462	80	0	856	0	FALSE	ACH-000041
RDES_BONE	AL136376.1--RPS28	7	0	AL136376.1	2337	chr1:116915895:-	RPS28	5685	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0	AL136376.1->chr1:116915890-116926718:-,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	RDES_BONE	1	1	0.0649	TRUE	0	0	0	12	0	TRUE	ACH-000041
RDES_BONE	MT-TA--MT-TN	3	16	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.1484	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RDES_BONE	1	1	0.1762	FALSE	369	2501	205	193	0	FALSE	ACH-000041
RDES_BONE	MT-TC--MT-TY	7	0	MT-TC	1039	chrM:5788:-	MT-TY	4083	chrM:5875:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0649	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	RDES_BONE	1	1	0.0649	FALSE	51	280	19	36	0	FALSE	ACH-000041
RDES_BONE	MT-ND6--MT-TE	3	14	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.1298	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RDES_BONE	1	1	0.1576	FALSE	499	1288	110	792	0	FALSE	ACH-000041
RDES_BONE	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RDES_BONE	1	1	0.0464	FALSE	462	80	0	856	0	FALSE	ACH-000041
RDES_BONE	MT-TA--MT-TN	5	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0464	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RDES_BONE	1	1	0.0464	FALSE	369	2501	205	193	0	FALSE	ACH-000041
RDES_BONE	LAS1L--NCL	4	0	LAS1L	13887	chrX:64737997:-	NCL	25264	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0371	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	RDES_BONE	1	1	0.0371	TRUE	0	0	0	3	0	TRUE	ACH-000041
RDES_BONE	MT-CO3--MT-ATP6	3	4	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.78	0.0278	0.0371	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RDES_BONE	0.78	1	0.0649	FALSE	189	492	56	216	0	FALSE	ACH-000041
RDES_BONE	MT-CO3--MT-ATP6	3	4	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	5	0	0.58	1	0.0278	0.0371	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	RDES_BONE	0.58	1	0.0649	FALSE	189	492	56	216	0	FALSE	ACH-000041
RDES_BONE	RP11-319G9.5--WWOX	4	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0371	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	RDES_BONE	1	1	0.0371	FALSE	154	425	28	76	0	FALSE	ACH-000041
RDES_BONE	MT-ND6--MT-TE	3	3	MT-ND6	1269	chrM:14405:-	MT-TE	4588	chrM:14680:-	INCL_NON_REF_SPLICE	YES	3	0	0.67	1	0.0278	0.0278	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RDES_BONE	0.67	1	0.0556	FALSE	499	1288	110	792	0	FALSE	ACH-000041
RDES_BONE	MT-ND6--MT-TE	3	1	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.0093	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RDES_BONE	1	1	0.0371	FALSE	499	1288	110	792	0	FALSE	ACH-000041
RDES_BONE	MT-ND6--MT-TE	3	1	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0.0093	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RDES_BONE	1	1	0.0371	FALSE	499	1288	110	792	0	FALSE	ACH-000041
RDES_BONE	PTPRJ--DNHD1	3	1	PTPRJ	1448	chr11:48002560:+	DNHD1	46468	chr11:6554911:+	ONLY_REF_SPLICE	YES	0	12	1	0.25	0.0278	0.0093	PTPRJ->Oncogene{Bushman},chr11:48002113-48189670:+,protein_tyrosine_phosphatase,_receptor_type_J,DNHD1->chr11:6518490-6614988:+,dynein_heavy_chain_domain_1	RDES_BONE	0.25	1	0.0371	TRUE	0	0	0	1	0	TRUE	ACH-000041
RDES_BONE	UBE2Z--CALCOCO2	3	1	UBE2Z	8798	chr17:47000299:+	CALCOCO2	23122	chr17:46925426:+	ONLY_REF_SPLICE	YES	139	89	0.03	0.04	0.0278	0.0093	LOCAL_REARRANGEMENT:+:[41847],UBE2Z->chr17:46985731-47006418:+,ubiquitin_conjugating_enzyme_E2_Z,CALCOCO2->calcium_binding_and_coiled-coil_domain_2,chr17:46908350-46943884:+	RDES_BONE	0.03	0.04	0.0371	TRUE	0	0	0	1	0	FALSE	ACH-000041
RDES_BONE	LAS1L--NCL	3	0	LAS1L	13890	chrX:64737994:-	NCL	25276	chr2:232325476:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0278	0	LAS1L->LAS1-like,_ribosome_biogenesis_factor,chrX:64732462-64754655:-,NCL->chr2:232318242-232348352:-,nucleolin	RDES_BONE	1	1	0.0278	TRUE	0	0	0	3	0	TRUE	ACH-000041
RDES_BONE	AC002066.1--AC073130.1	2	2	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	6	0	0.4	1	0.0185	0.0185	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	RDES_BONE	0.4	1	0.037	FALSE	0	3	0	33	0	FALSE	ACH-000041
RDES_BONE	CCT7--RP11-566K11.7	2	0	CCT7	6669	chr2:73467671:+	RP11-566K11.7	19535	chr16:89976999:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	CCT7->chaperonin_containing_TCP1_subunit_7,chr2:73460548-73480149:+,RP11-566K11.7->chr16:89972565-89984641:+	RDES_BONE	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000041
RDES_BONE	EED--PICALM	2	0	EED	1800	chr11:85956385:+	PICALM	22249	chr11:85742653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	EED->chr11:85955586-85989855:+,embryonic_ectoderm_development,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	RDES_BONE	1	1	0.0185	TRUE	0	0	0	3	0	TRUE	ACH-000041
RDES_BONE	FGF14-IT1--FGF14	2	0	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	RDES_BONE	1	1	0.0185	TRUE	71	201	23	28	0	FALSE	ACH-000041
RDES_BONE	NOC4L--WRAP73	2	0	NOC4L	2218	chr12:132630210:+	WRAP73	13278	chr1:3564124:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,WRAP73->WD_repeat_containing,_antisense_to_TP73,chr1:3547331-3569325:-	RDES_BONE	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000041
RDES_BONE	PTPRJ--DNHD1	2	0	PTPRJ	1448	chr11:48002560:+	DNHD1	56635	chr11:6577913:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	PTPRJ->Oncogene{Bushman},chr11:48002113-48189670:+,protein_tyrosine_phosphatase,_receptor_type_J,DNHD1->chr11:6518490-6614988:+,dynein_heavy_chain_domain_1	RDES_BONE	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000041
RDES_BONE	RPTOR--ATP5G2	2	0	RPTOR	14542	chr17:78797023:+	ATP5G2	52255	chr12:54066429:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0185	0	RPTOR->ArcherDX_panel,FoundationOne_panel,chr17:78518619-78940171:+,regulatory_associated_protein_of_MTOR_complex_1,ATP5G2->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_C2_(subunit_9),chr12:54026510-54071192:-	RDES_BONE	1	1	0.0185	TRUE	0	0	0	1	0	TRUE	ACH-000041
RDES_BONE	AC002066.1--AC073130.1	1	3	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	8	0	0.33	1	0.0093	0.0278	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	RDES_BONE	0.33	1	0.0371	FALSE	0	1	1	30	0	FALSE	ACH-000041
RDES_BONE	AP000487.5--FCGRT	1	1	AP000487.5	1391	chr11:70244204:-	FCGRT	18129	chr19:50027764:+	ONLY_REF_SPLICE	YES	5	1836	0.29	0	0.0093	0.0093	AP000487.5->chr11:70218352-70244594:-,FCGRT->Fc_fragment_of_IgG_receptor_and_transporter,chr19:50010073-50029590:+	RDES_BONE	0	0.29	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000041
RDES_BONE	CDC37--GNAS	1	1	CDC37	5767	chr19:10506111:-	GNAS	28602	chr20:57470667:+	ONLY_REF_SPLICE	NO	362	927	0.01	0	0.0093	0.0093	CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	RDES_BONE	0	0.01	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000041
RDES_BONE	EPHA4--OPHN1	1	1	EPHA4	5982	chr2:222428451:-	OPHN1	33412	chrX:67518938:-	ONLY_REF_SPLICE	YES	159	11	0.01	0.15	0.0093	0.0093	EPHA4->EPH_receptor_A4,chr2:222282747-222438922:-,OPHN1->chrX:67262186-67653755:-,oligophrenin_1	RDES_BONE	0.01	0.15	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000041
RDES_BONE	GLG1--RFWD3	1	1	GLG1	23838	chr16:74499574:-	RFWD3	43533	chr16:74678633:-	ONLY_REF_SPLICE	YES	910	112	0	0.02	0.0093	0.0093	LOCAL_REARRANGEMENT:-:[14280],GLG1->chr16:74485856-74641012:-,golgi_glycoprotein_1,RFWD3->chr16:74655292-74700779:-,ring_finger_and_WD_repeat_domain_3	RDES_BONE	0	0.02	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000041
RDES_BONE	NOC4L--FBRSL1	1	1	NOC4L	2218	chr12:132630210:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	88	50	0.02	0.04	0.0093	0.0093	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	RDES_BONE	0.02	0.04	0.0186	TRUE	0	1	0	10	0	FALSE	ACH-000041
RDES_BONE	NOC4L--FBRSL1	1	1	NOC4L	5448	chr12:132633440:+	FBRSL1	19318	chr12:133102320:+	ONLY_REF_SPLICE	YES	82	50	0.02	0.04	0.0093	0.0093	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Skin=[count:7=pct:2.2],Lung=[count:4=pct:2.4],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Spleen=[count:2=pct:1.8],Testis=[count:2=pct:1.9],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Adipose_Tissue=[count:1=pct:0.3],Uterus=[count:1=pct:2.3],Nerve=[count:1=pct:0.6],Ovary=[count:1=pct:1.9],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Lymphoid=1,Lung=1},NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog,FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1	RDES_BONE	0.02	0.04	0.0186	TRUE	4	9	0	12	0	FALSE	ACH-000041
RDES_BONE	RNASEH2C--RP11-158J3.2	1	1	RNASEH2C	2267	chr11:65487152:-	RP11-158J3.2	8698	chr5:63276870:-	ONLY_REF_SPLICE	YES	55	0	0.04	1	0.0093	0.0093	RNASEH2C->chr11:65482367-65488418:-,ribonuclease_H2_subunit_C,RP11-158J3.2->chr5:63253720-63276870:-	RDES_BONE	0.04	1	0.0186	TRUE	0	0	0	1	0	TRUE	ACH-000041
RDES_BONE	RP13-16H11.2--PHF14	1	1	RP13-16H11.2	2132	chr10:26957336:-	PHF14	30835	chr7:11150977:+	ONLY_REF_SPLICE	YES	343	77	0.01	0.03	0.0093	0.0093	RP13-16H11.2->chr10:26953135-26965088:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	RDES_BONE	0.01	0.03	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000041
RDES_BONE	RP13-16H11.2--SYCP1	1	1	RP13-16H11.2	2132	chr10:26957336:-	SYCP1	22682	chr1:115453018:+	ONLY_REF_SPLICE	YES	343	209	0.01	0.01	0.0093	0.0093	RP13-16H11.2->chr10:26953135-26965088:-,SYCP1->chr1:115397424-115537991:+,synaptonemal_complex_protein_1	RDES_BONE	0.01	0.01	0.0186	FALSE	0	0	0	1	0	FALSE	ACH-000041
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BIN2--CELA1	558	46	BIN2	1647	chr12:51717806:-	CELA1	26085	chr12:51723617:-	ONLY_REF_SPLICE	YES	30	0	0.95	1	5.7981	0.478	LOCAL_REARRANGEMENT:-:[3775],BIN2->bridging_integrator_2,chr12:51674822-51718452:-,CELA1->Oncogene{Bushman},chr12:51722227-51740463:-,chymotrypsin_like_elastase_family_member_1	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	6.2761	TRUE	0	0	0	1	0	TRUE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	157	41	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	53	113	0.79	0.64	1.6314	0.426	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.64	0.79	2.0574	TRUE	181	1564	124	196	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	124	24	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2885	0.2494	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.5379	TRUE	508	994	45	981	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	118	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2261	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2261	TRUE	0	0	0	518	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	73	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	116	5	0.4	0.94	0.7585	0.0416	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.94	0.8001	TRUE	519	3926	326	965	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	22	5	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	4	0.87	0.87	0.2286	0.052	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	0.87	0.2806	FALSE	16	356	14	466	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	22	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2286	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2286	TRUE	0	0	0	434	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	21	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2182	0.0312	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2494	FALSE	462	80	0	856	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	16	0	ZNF654	1688	chr3:88188941:+	HMGB2	12541	chr4:174253298:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1663	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1663	TRUE	0	0	0	518	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	11	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1143	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1143	TRUE	0	42	0	133	42	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CMTM8--CMTM7	9	7	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	74	1	0.18	0.94	0.0935	0.0727	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.94	0.1662	FALSE	118	557	29	88	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	8	1	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	2608	0	0	1	0.0831	0.0104	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0935	FALSE	0	0	0	100	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	8	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0831	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0831	TRUE	0	0	0	81	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	6	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.85	0.0623	0.052	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.85	1	0.1143	FALSE	515	4851	409	746	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	7	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0727	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0727	TRUE	0	0	0	81	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0727	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0727	FALSE	13	9	0	364	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	7	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0727	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0727	TRUE	0	0	0	518	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0623	0.0312	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0935	FALSE	462	80	0	856	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLHL42--SMCO2	6	2	KLHL42	2183	chr12:27934135:+	SMCO2	18640	chr12:27627719:+	ONLY_REF_SPLICE	YES	30	0	0.21	1	0.0623	0.0208	KLHL42->chr12:27932953-27955973:+,kelch_like_family_member_42,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.0831	TRUE	0	0	0	1	0	TRUE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL5	6	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0623	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0623	TRUE	0	0	0	39	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	6	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0623	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0623	TRUE	1	39	0	134	39	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	5	0	EIF1	1089	chr17:39845225:+	RPS28	8128	chr19:8386385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.052	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.052	TRUE	0	0	0	81	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOR2--UBC	5	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.052	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.052	TRUE	145	312	16	51	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	4	3	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	27	0	0.21	1	0.0416	0.0312	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.0728	FALSE	272	151	14	158	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	2	EIF1	1121	chr17:39845257:+	RPS28	8168	chr19:8386425:+	INCL_NON_REF_SPLICE	YES	710	0	0.01	1	0.0416	0.0208	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0624	FALSE	0	0	0	81	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	4	2	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	106	0	0.05	1	0.0416	0.0208	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0624	TRUE	0	0	0	81	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	2	9	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	53	86	0.17	0.11	0.0208	0.0935	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.17	0.1143	TRUE	20	16	0	28	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OTUD5--MT-ND4L	4	1	OTUD5	9682	chrX:48780079:-	MT-ND4L	13458	chrM:10471:+	INCL_NON_REF_SPLICE	YES	78	0	0.06	1	0.0416	0.0104	OTUD5->OTU_deubiquitinase_5,chrX:48779305-48815648:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.052	FALSE	0	0	0	6	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0.052	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0832	FALSE	407	2205	196	549	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0416	FALSE	13	9	0	364	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0416	TRUE	0	0	0	434	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0416	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0416	TRUE	0	0	0	434	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--SNX5	4	0	RCC1	2175	chr1:28834672:+	SNX5	22037	chr20:17941969:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0416	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,SNX5->Oncogene{Bushman},chr20:17922241-17949623:-,sorting_nexin_5	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0416	TRUE	0	5	0	11	0	TRUE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--GNB1	3	1	RCC1	2175	chr1:28834672:+	GNB1	21015	chr1:1770677:-	ONLY_REF_SPLICE	YES	8	5	0.33	0.44	0.0312	0.0104	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.44	0.0416	TRUE	0	10	0	7	3	TRUE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	1	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	13	4	0.24	0.5	0.0312	0.0104	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.24	0.5	0.0416	FALSE	0	48	1	163	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRI3BP--UBC	3	0	BRI3BP	1304	chr12:125478549:+	UBC	15376	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0312	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Artery_-_Aorta=1},LOCAL_INVERSION:+:-:[76332],BRI3BP->BRI3_binding_protein,chr12:125478246-125515777:+,UBC->chr12:125396150-125401914:-,ubiquitin_C	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0312	TRUE	5	99	5	34	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	8	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	59	113	0.13	0.07	0.0104	0.0831	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.13	0.0935	TRUE	105	90	7	93	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	2	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0.0104	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0312	FALSE	46	201	11	112	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0104	0.052	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0624	FALSE	275	511	55	178	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCOR2--UBC	2	0	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0208	TRUE	52	148	13	33	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0208	FALSE	292	1546	117	613	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PINX1--RP1L1	2	0	PINX1	6234	chr8:10683662:-	RP1L1	17312	chr8:10480730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	NEIGHBORS[52776],PINX1->PIN2/TERF1_interacting,_telomerase_inhibitor_1,chr8:10622473-10697394:-,RP1L1->chr8:10463859-10569697:-,retinitis_pigmentosa_1-like_1	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0208	FALSE	1	8	0	15	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ACAP1	2	0	RCC1	2920	chr1:28835417:+	ACAP1	22150	chr17:7246698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ACAP1->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_1,Oncogene{Bushman},chr17:7239848-7254797:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0208	TRUE	0	0	0	3	0	TRUE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0208	FALSE	416	2512	207	587	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	2	0	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0208	TRUE	37	101	7	40	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VPS37B--UBC	2	0	VPS37B	1493	chr12:123380499:-	UBC	16696	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0208	0	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1]},GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},VPS37B->VPS37B,_ESCRT-I_subunit,chr12:123349882-123380991:-,UBC->chr12:125396150-125401914:-,ubiquitin_C	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0208	TRUE	4	0	1	2	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KLHL42--SMCO2	1	2	KLHL42	2183	chr12:27934135:+	SMCO2	16154	chr12:27623555:+	ONLY_REF_SPLICE	YES	30	0	0.09	1	0.0104	0.0208	KLHL42->chr12:27932953-27955973:+,kelch_like_family_member_42,SMCO2->chr12:27619743-27655118:+,single-pass_membrane_protein_with_coiled-coil_domains_2	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.0312	TRUE	0	0	0	1	0	TRUE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	1	2	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	NO	37	40	0.07	0.07	0.0104	0.0208	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.07	0.0312	TRUE	4	3	0	21	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF7--CTD-2410N18.5	1	2	TCF7	2323	chr5:133451724:+	CTD-2410N18.5	20410	chr5:133509713:-	ONLY_REF_SPLICE	NO	1175	0	0	1	0.0104	0.0208	LOCAL_INVERSION:+:-:[15305],TCF7->chr5:133450402-133487556:+,transcription_factor_7_(T-cell_specific,_HMG-box),CTD-2410N18.5->chr5:133502861-133561762:-	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0312	FALSE	0	2	0	4	1	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADCYAP1--RP11-78F17.1	1	1	ADCYAP1	3367	chr18:908364:+	RP11-78F17.1	13815	chr18:1133844:+	ONLY_REF_SPLICE	YES	35	0	0.05	1	0.0104	0.0104	NEIGHBORS[64417],ADCYAP1->adenylate_cyclase_activating_polypeptide_1,chr18:904944-912173:+,RP11-78F17.1->chr18:976590-1174824:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0208	FALSE	0	4	0	2	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADCYAP1--RP11-78F17.1	1	1	ADCYAP1	3367	chr18:908364:+	RP11-78F17.1	16014	chr18:1159180:+	ONLY_REF_SPLICE	YES	35	0	0.05	1	0.0104	0.0104	NEIGHBORS[64417],ADCYAP1->adenylate_cyclase_activating_polypeptide_1,chr18:904944-912173:+,RP11-78F17.1->chr18:976590-1174824:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0208	FALSE	3	1	0	1	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATAD2--CEP57	1	1	ATAD2	5205	chr8:124392769:-	CEP57	50539	chr11:95562351:+	ONLY_REF_SPLICE	YES	171	221	0.01	0.01	0.0104	0.0104	ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-,CEP57->centrosomal_protein_57,chr11:95523129-95565857:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATF6B--RBM39	1	1	ATF6B	4790	chr6:32088548:-	RBM39	30469	chr20:34301018:-	ONLY_REF_SPLICE	YES	158	430	0.01	0	0.0104	0.0104	{Klijn_CCL:Lung=1},ATF6B->activating_transcription_factor_6_beta,chr6:32065953-32096030:-,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0208	FALSE	0	1	0	2	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHD2--CHMP1A	1	1	CHD2	6529	chr15:93444529:+	CHMP1A	64627	chr16:89713739:-	ONLY_REF_SPLICE	YES	52	95	0.04	0.02	0.0104	0.0104	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Thyroid=[count:2=pct:1.1],Brain=[count:1=pct:0.2]},GTEx_v2:{count=10;pct=0.12%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Whole_Blood=2,Breast_-_Mammary_Tissue=1,Brain_-_Hypothalamus=1,Thyroid=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1},CHD2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:93426526-93571237:+,chromodomain_helicase_DNA_binding_protein_2,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.04	0.0208	TRUE	2	11	0	5	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FLT1--ERP29	1	1	FLT1	1349	chr13:29068917:-	ERP29	44859	chr12:112459954:+	ONLY_REF_SPLICE	YES	9	557	0.18	0	0.0104	0.0104	FLT1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:28874489-29069265:-,fms_related_tyrosine_kinase_1,ERP29->chr12:112451120-112461255:+,endoplasmic_reticulum_protein_29	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.18	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FRYL--GRSF1	1	1	FRYL	1245	chr4:48782095:-	GRSF1	85022	chr4:71702031:-	ONLY_REF_SPLICE	YES	31	69	0.06	0.03	0.0104	0.0104	FRYL->FRY_like_transcription_coactivator,Oncogene{Bushman},chr4:48499378-48782339:-,GRSF1->G-rich_RNA_sequence_binding_factor_1,chr4:71681499-71705662:-	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.06	0.0208	TRUE	0	0	0	1	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	1	1	KANSL1	9741	chr17:44171926:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	NO	53	21	0.04	0.09	0.0104	0.0104	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.09	0.0208	TRUE	51	25	1	17	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAP4K4--RFX8	1	1	MAP4K4	16271	chr2:102472600:+	RFX8	46389	chr2:102068908:-	ONLY_REF_SPLICE	YES	308	131	0.01	0.02	0.0104	0.0104	MAP4K4->chr2:102313312-102511149:+,mitogen-activated_protein_kinase_kinase_kinase_kinase_4,RFX8->RFX_family_member_8,_lacking_RFX_DNA_binding_domain,chr2:102013823-102091165:-	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	METAP1--EIF4E	1	1	METAP1	1248	chr4:99917018:+	EIF4E	28557	chr4:99823133:-	ONLY_REF_SPLICE	NO	195	4	0.01	0.33	0.0104	0.0104	{Klijn_CCL:Sarcomatoid=1,Stomach=1},LOCAL_INVERSION:+:-:[64983],METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1,EIF4E->Oncogene{Bushman},chr4:99792835-99851788:-,eukaryotic_translation_initiation_factor_4E	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.33	0.0208	FALSE	0	1	0	7	1	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--DMRTA1	1	1	MTAP	1239	chr9:21802780:+	DMRTA1	25056	chr9:22451063:+	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0104	0.0104	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,DMRTA1->DMRT_like_family_A1,chr9:22446840-22455739:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0208	TRUE	0	0	0	1	0	TRUE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--CSNK1G2	1	1	OAZ1	1259	chr19:2269743:+	CSNK1G2	14732	chr19:1969507:+	ONLY_REF_SPLICE	YES	1696	4	0	0.33	0.0104	0.0104	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_FI:{Whole_Blood=[count:9=pct:6.8],Lung=[count:6=pct:3.6],Blood=[count:3=pct:1.7]},GTEx_v2:{count=8;pct=0.09%;dist=Lung=4,Whole_Blood=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,CSNK1G2->casein_kinase_1_gamma_2,chr19:1941188-1981337:+	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.33	0.0208	FALSE	17	1	0	1	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--PICALM	1	1	PROSC	2996	chr8:37623873:+	PICALM	14628	chr11:85742653:-	ONLY_REF_SPLICE	YES	153	69	0.01	0.03	0.0104	0.0104	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPNS3--MCM7	1	1	SPNS3	10021	chr17:4381932:+	MCM7	19721	chr7:99696826:-	ONLY_REF_SPLICE	YES	270	642	0.01	0	0.0104	0.0104	SPNS3->chr17:4336983-4391503:+,spinster_homolog_3_(Drosophila),MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	1	1	SPON2	4412	chr4:1195057:-	CTBP1	30074	chr4:1222131:-	ONLY_REF_SPLICE	NO	37	275	0.05	0.01	0.0104	0.0104	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.0208	FALSE	1	0	0	4	0	FALSE	ACH-000636
RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM194A--SMARCC2	1	1	TMEM194A	2264	chr12:57472402:-	SMARCC2	25910	chr12:56572840:-	ONLY_REF_SPLICE	YES	219	161	0.01	0.01	0.0104	0.0104	TMEM194A->chr12:57449426-57481846:-,SMARCC2->SWI/SNF_related,_matrix_associated,_actin_dependent_regulator_of_chromatin_subfamily_c_member_2,chr12:56556767-56583351:-	RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.0208	FALSE	0	0	0	1	0	FALSE	ACH-000636
MSTO211H_PLEURA	TIMM23B--LINC00843	103	35	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.97	1.5712	0.5339	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MSTO211H_PLEURA	0.97	1	2.1051	TRUE	508	994	45	981	0	FALSE	ACH-000335
MSTO211H_PLEURA	TIMM23--RP11-464F9.1	70	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	228	2	0.24	0.97	1.0678	0.0458	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MSTO211H_PLEURA	0.24	0.97	1.1136	TRUE	519	3926	326	965	0	FALSE	ACH-000335
MSTO211H_PLEURA	SETD3--CCDC85C	54	20	SETD3	1152	chr14:99947065:-	CCDC85C	29379	chr14:99988577:-	ONLY_REF_SPLICE	YES	28	39	0.73	0.65	0.8237	0.3051	LOCAL_REARRANGEMENT:-:[30387],SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,CCDC85C->chr14:99977603-100070363:-,coiled-coil_domain_containing_85C	MSTO211H_PLEURA	0.65	0.73	1.1288	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	MT-TA--MT-TC	47	9	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7169	0.1373	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MSTO211H_PLEURA	1	1	0.8542	FALSE	462	80	0	856	0	FALSE	ACH-000335
MSTO211H_PLEURA	STXBP5--RP11-489O18.1	41	30	STXBP5	11120	chr6:147612308:+	RP11-489O18.1	37371	chr8:139085144:+	ONLY_REF_SPLICE	YES	14	0	0.84	1	0.6254	0.4576	STXBP5->chr6:147525561-147706866:+,syntaxin_binding_protein_5,RP11-489O18.1->chr8:139075511-139085483:+	MSTO211H_PLEURA	0.84	1	1.083	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	WDR36--NREP-AS1	38	11	WDR36	7672	chr5:110438098:+	NREP-AS1	29868	chr5:111275734:+	ONLY_REF_SPLICE	YES	50	0	0.49	1	0.5797	0.1678	WDR36->WD_repeat_domain_36,chr5:110427414-110466200:+,NREP-AS1->NREP_antisense_RNA_1,chr5:111248205-111353006:+	MSTO211H_PLEURA	0.49	1	0.7475	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	NPM1P24--SET	31	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	51	1445	0.39	0.02	0.4729	0.0153	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MSTO211H_PLEURA	0.02	0.39	0.4882	TRUE	0	0	0	434	0	FALSE	ACH-000335
MSTO211H_PLEURA	PLXDC1--TAF13	26	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3966	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	MSTO211H_PLEURA	1	1	0.3966	TRUE	7	10	0	216	0	FALSE	ACH-000335
MSTO211H_PLEURA	PVT1--CASC11	12	19	PVT1	1202	chr8:128806980:+	CASC11	28460	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	3024	0	0.01	1	0.183	0.2898	LOCAL_INVERSION:+:-:[60566],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	MSTO211H_PLEURA	0.01	1	0.4728	TRUE	0	5	0	3	5	TRUE	ACH-000335
MSTO211H_PLEURA	C15orf57--CBX3	13	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	23	27	0.48	0.44	0.1983	0.122	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MSTO211H_PLEURA	0.44	0.48	0.3203	TRUE	267	562	48	632	0	FALSE	ACH-000335
MSTO211H_PLEURA	SETD3--CCDC85C	6	20	SETD3	1152	chr14:99947065:-	CCDC85C	29382	chr14:99988574:-	INCL_NON_REF_SPLICE	YES	28	38	0.48	0.41	0.0915	0.3051	LOCAL_REARRANGEMENT:-:[30387],SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,CCDC85C->chr14:99977603-100070363:-,coiled-coil_domain_containing_85C	MSTO211H_PLEURA	0.41	0.48	0.3966	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	PVT1--CASC11	5	23	PVT1	18060	chr8:129022690:+	CASC11	28460	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	1433	0	0.02	1	0.0763	0.3508	LOCAL_INVERSION:+:-:[60566],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	MSTO211H_PLEURA	0.02	1	0.4271	TRUE	0	1	0	2	1	FALSE	ACH-000335
MSTO211H_PLEURA	HSP90AB1--MT-RNR2	10	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4034	0	0	1	0.1525	0.0153	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MSTO211H_PLEURA	0	1	0.1678	FALSE	13	9	0	364	0	FALSE	ACH-000335
MSTO211H_PLEURA	RP11-680G10.1--GSE1	10	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	5	1	0.69	0.1525	0.0153	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MSTO211H_PLEURA	0.69	1	0.1678	TRUE	465	1949	224	605	0	FALSE	ACH-000335
MSTO211H_PLEURA	AGO2--PROM1	10	0	AGO2	1135	chr8:141645584:-	PROM1	34304	chr4:16077741:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1525	0	AGO2->argonaute_2,_RISC_catalytic_component,chr8:141541264-141645718:-,PROM1->chr4:15964699-16086001:-,prominin_1	MSTO211H_PLEURA	1	1	0.1525	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	PVT1--CASC11	4	19	PVT1	2457	chr8:128808254:+	CASC11	28460	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	3176	0	0.01	1	0.061	0.2898	LOCAL_INVERSION:+:-:[60566],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	MSTO211H_PLEURA	0.01	1	0.3508	TRUE	0	2	0	1	2	TRUE	ACH-000335
MSTO211H_PLEURA	ABCD4--ZFYVE1	5	11	ABCD4	13457	chr14:74754910:-	ZFYVE1	23951	chr14:73460065:-	ONLY_REF_SPLICE	YES	63	11	0.2	0.59	0.0763	0.1678	ABCD4->ATP_binding_cassette_subfamily_D_member_4,chr14:74752126-74769759:-,ZFYVE1->chr14:73436159-73493920:-,zinc_finger_FYVE-type_containing_1	MSTO211H_PLEURA	0.2	0.59	0.2441	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	PVT1--CASC11	3	19	PVT1	6936	chr8:128867565:+	CASC11	28460	chr8:128746205:-	INCL_NON_REF_SPLICE	YES	3091	0	0.01	1	0.0458	0.2898	LOCAL_INVERSION:+:-:[60566],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,CASC11->cancer_susceptibility_candidate_11_(non-protein_coding),chr8:128698588-128746213:-	MSTO211H_PLEURA	0.01	1	0.3356	TRUE	0	1	0	1	1	FALSE	ACH-000335
MSTO211H_PLEURA	PROM1--TPGS1	6	3	PROM1	8824	chr4:16077310:-	TPGS1	50838	chr19:518889:+	ONLY_REF_SPLICE	YES	1	27	0.9	0.25	0.0915	0.0458	PROM1->chr4:15964699-16086001:-,prominin_1,TPGS1->chr19:507299-519654:+,tubulin_polyglutamylase_complex_subunit_1	MSTO211H_PLEURA	0.25	0.9	0.1373	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	ABCD4--ZFYVE1	4	9	ABCD4	12948	chr14:74755419:-	ZFYVE1	23951	chr14:73460065:-	ONLY_REF_SPLICE	YES	55	11	0.19	0.54	0.061	0.1373	ABCD4->ATP_binding_cassette_subfamily_D_member_4,chr14:74752126-74769759:-,ZFYVE1->chr14:73436159-73493920:-,zinc_finger_FYVE-type_containing_1	MSTO211H_PLEURA	0.19	0.54	0.1983	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	ABCD4--ZFYVE1	3	12	ABCD4	13850	chr14:74754517:-	ZFYVE1	23951	chr14:73460065:-	INCL_NON_REF_SPLICE	YES	49	11	0.23	0.58	0.0458	0.183	ABCD4->ATP_binding_cassette_subfamily_D_member_4,chr14:74752126-74769759:-,ZFYVE1->chr14:73436159-73493920:-,zinc_finger_FYVE-type_containing_1	MSTO211H_PLEURA	0.23	0.58	0.2288	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	PVT1--MYC	2	16	PVT1	18060	chr8:129022690:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	1433	1081	0.01	0.02	0.0305	0.2441	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	MSTO211H_PLEURA	0.01	0.02	0.2746	TRUE	0	0	0	3	0	FALSE	ACH-000335
MSTO211H_PLEURA	PVT1--MYC	4	8	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	3024	1110	0	0.01	0.061	0.122	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	MSTO211H_PLEURA	0	0.01	0.183	TRUE	3	14	0	24	0	FALSE	ACH-000335
MSTO211H_PLEURA	ACER2--TEK	4	5	ACER2	3246	chr9:19424839:+	TEK	16140	chr9:27172614:+	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.061	0.0763	ACER2->alkaline_ceramidase_2,chr9:19408925-19452018:+,TEK->Oncogene{Bushman},TEK_receptor_tyrosine_kinase,chr9:27109139-27230173:+	MSTO211H_PLEURA	0.9	1	0.1373	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	MT-TA--MT-TC	5	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0763	0.0153	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	MSTO211H_PLEURA	1	1	0.0916	FALSE	462	80	0	856	0	FALSE	ACH-000335
MSTO211H_PLEURA	NPM1P24--SET	5	1	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	52	1299	0.1	0	0.0763	0.0153	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MSTO211H_PLEURA	0	0.1	0.0916	FALSE	0	0	0	434	0	FALSE	ACH-000335
MSTO211H_PLEURA	PVT1--MYC	1	16	PVT1	20335	chr8:129082518:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	1247	1081	0.01	0.02	0.0153	0.2441	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	MSTO211H_PLEURA	0.01	0.02	0.2594	TRUE	0	0	0	1	0	FALSE	ACH-000335
MSTO211H_PLEURA	PVT1--MYC	1	16	PVT1	20424	chr8:129082607:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	1227	1081	0.01	0.02	0.0153	0.2441	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	MSTO211H_PLEURA	0.01	0.02	0.2594	TRUE	0	0	0	1	0	FALSE	ACH-000335
MSTO211H_PLEURA	PVT1--MYC	1	16	PVT1	18060	chr8:129022690:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	1433	1110	0.01	0.02	0.0153	0.2441	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	MSTO211H_PLEURA	0.01	0.02	0.2594	TRUE	0	0	0	3	0	FALSE	ACH-000335
MSTO211H_PLEURA	PVT1--MYC	2	12	PVT1	8346	chr8:128903244:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	2402	1081	0.01	0.01	0.0305	0.183	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	MSTO211H_PLEURA	0.01	0.01	0.2135	TRUE	0	5	0	7	2	FALSE	ACH-000335
MSTO211H_PLEURA	C15orf57--CBX3	3	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	20	28	0.33	0.26	0.0458	0.1068	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MSTO211H_PLEURA	0.26	0.33	0.1526	TRUE	267	562	48	632	0	FALSE	ACH-000335
MSTO211H_PLEURA	PVT1--MYC	1	14	PVT1	10746	chr8:128951922:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	1490	1081	0.01	0.01	0.0153	0.2136	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	MSTO211H_PLEURA	0.01	0.01	0.2289	TRUE	0	1	0	4	0	FALSE	ACH-000335
MSTO211H_PLEURA	SETD3--CCDC85C	1	14	SETD3	1152	chr14:99947065:-	CCDC85C	30487	chr14:99983520:-	ONLY_REF_SPLICE	YES	28	53	0.35	0.22	0.0153	0.2136	LOCAL_REARRANGEMENT:-:[30387],SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,CCDC85C->chr14:99977603-100070363:-,coiled-coil_domain_containing_85C	MSTO211H_PLEURA	0.22	0.35	0.2289	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	NPM1P24--SET	4	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	52	1299	0.09	0	0.061	0.0153	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MSTO211H_PLEURA	0	0.09	0.0763	FALSE	0	0	0	434	0	FALSE	ACH-000335
MSTO211H_PLEURA	ABCD4--ZFYVE1	2	8	ABCD4	12181	chr14:74756186:-	ZFYVE1	23951	chr14:73460065:-	ONLY_REF_SPLICE	YES	29	11	0.26	0.48	0.0305	0.122	ABCD4->ATP_binding_cassette_subfamily_D_member_4,chr14:74752126-74769759:-,ZFYVE1->chr14:73436159-73493920:-,zinc_finger_FYVE-type_containing_1	MSTO211H_PLEURA	0.26	0.48	0.1525	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	PVT1--MYC	1	12	PVT1	8346	chr8:128903244:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	2402	1110	0.01	0.01	0.0153	0.183	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	MSTO211H_PLEURA	0.01	0.01	0.1983	TRUE	0	5	0	7	2	FALSE	ACH-000335
MSTO211H_PLEURA	PVT1--METTL16	3	3	PVT1	1202	chr8:128806980:+	METTL16	37730	chr17:2344853:-	ONLY_REF_SPLICE	YES	3024	39	0	0.13	0.0458	0.0458	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,METTL16->chr17:2308856-2415185:-,methyltransferase_like_16	MSTO211H_PLEURA	0	0.13	0.0916	FALSE	0	0	0	1	0	FALSE	ACH-000335
MSTO211H_PLEURA	RP11-680G10.1--GSE1	3	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0.0458	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MSTO211H_PLEURA	1	1	0.0916	TRUE	458	1351	185	561	0	FALSE	ACH-000335
MSTO211H_PLEURA	FBXW7--RP11-18H21.2	2	6	FBXW7	2161	chr4:153456093:-	RP11-18H21.2	28520	chr4:153069278:-	ONLY_REF_SPLICE	YES	10	0	0.44	1	0.0305	0.0915	FBXW7->ArcherDX_panel,F-box_and_WD_repeat_domain_containing_7,FoundationOne_panel,Oncogene{Bushman},chr4:153242410-153457253:-,RP11-18H21.2->chr4:153067537-153099725:-	MSTO211H_PLEURA	0.44	1	0.122	TRUE	0	1	0	1	1	TRUE	ACH-000335
MSTO211H_PLEURA	PVT1--MYC	1	10	PVT1	2520	chr8:128808317:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	NO	3259	1081	0	0.01	0.0153	0.1525	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	MSTO211H_PLEURA	0	0.01	0.1678	TRUE	0	6	0	6	0	FALSE	ACH-000335
MSTO211H_PLEURA	SLC1A5--MT-ND4L	3	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	496	0	0.01	1	0.0458	0.0305	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MSTO211H_PLEURA	0.01	1	0.0763	FALSE	0	0	0	189	0	FALSE	ACH-000335
MSTO211H_PLEURA	ABCD4--ZFYVE1	1	9	ABCD4	13004	chr14:74755363:-	ZFYVE1	23951	chr14:73460065:-	ONLY_REF_SPLICE	YES	57	11	0.15	0.48	0.0153	0.1373	ABCD4->ATP_binding_cassette_subfamily_D_member_4,chr14:74752126-74769759:-,ZFYVE1->chr14:73436159-73493920:-,zinc_finger_FYVE-type_containing_1	MSTO211H_PLEURA	0.15	0.48	0.1526	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	HSP90AB1--MT-RNR2	3	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4049	0	0	1	0.0458	0.0153	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	MSTO211H_PLEURA	0	1	0.0611	FALSE	13	9	0	364	0	FALSE	ACH-000335
MSTO211H_PLEURA	NPM1P24--SET	3	1	NPM1P24	1533	chr10:74677760:-	SET	12307	chr9:131456202:+	INCL_NON_REF_SPLICE	NO	52	1305	0.07	0	0.0458	0.0153	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	MSTO211H_PLEURA	0	0.07	0.0611	FALSE	0	0	0	434	0	FALSE	ACH-000335
MSTO211H_PLEURA	RP11-444D3.1--SOX5	3	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0458	0.0153	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MSTO211H_PLEURA	0.8	1	0.0611	TRUE	477	1352	189	275	0	FALSE	ACH-000335
MSTO211H_PLEURA	VAT1--MT-ND4L	3	1	VAT1	7912	chr17:41167714:-	MT-ND4L	12006	chrM:10471:+	INCL_NON_REF_SPLICE	YES	487	0	0.01	1	0.0458	0.0153	VAT1->chr17:41166622-41177140:-,vesicle_amine_transport_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	MSTO211H_PLEURA	0.01	1	0.0611	FALSE	0	0	0	5	0	FALSE	ACH-000335
MSTO211H_PLEURA	ABCD4--ZFYVE1	3	0	ABCD4	1182	chr14:74769578:-	ZFYVE1	23951	chr14:73460065:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0	ABCD4->ATP_binding_cassette_subfamily_D_member_4,chr14:74752126-74769759:-,ZFYVE1->chr14:73436159-73493920:-,zinc_finger_FYVE-type_containing_1	MSTO211H_PLEURA	1	1	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	ABCD4--ZFYVE1	2	4	ABCD4	11373	chr14:74756994:-	ZFYVE1	23951	chr14:73460065:-	ONLY_REF_SPLICE	YES	42	11	0.12	0.35	0.0305	0.061	ABCD4->ATP_binding_cassette_subfamily_D_member_4,chr14:74752126-74769759:-,ZFYVE1->chr14:73436159-73493920:-,zinc_finger_FYVE-type_containing_1	MSTO211H_PLEURA	0.12	0.35	0.0915	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	GPI--VIM	3	0	GPI	7034	chr19:34868685:+	VIM	23891	chr10:17271298:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0458	0	GPI->chr19:34850385-34893061:+,glucose-6-phosphate_isomerase,VIM->chr10:17270258-17279592:+,vimentin	MSTO211H_PLEURA	1	1	0.0458	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	MYC--PVT1	3	0	MYC	2190	chr8:128748869:+	PVT1	30516	chr8:129108764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0458	0	NEIGHBORS[53105],MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	MSTO211H_PLEURA	1	1	0.0458	FALSE	0	2	0	1	0	FALSE	ACH-000335
MSTO211H_PLEURA	WDR36--NREP-AS1	1	8	WDR36	6617	chr5:110436420:+	NREP-AS1	29868	chr5:111275734:+	ONLY_REF_SPLICE	NO	63	0	0.12	1	0.0153	0.122	WDR36->WD_repeat_domain_36,chr5:110427414-110466200:+,NREP-AS1->NREP_antisense_RNA_1,chr5:111248205-111353006:+	MSTO211H_PLEURA	0.12	1	0.1373	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	SNX29--MMP28	2	3	SNX29	19351	chr16:12223615:+	MMP28	42751	chr17:34106327:-	ONLY_REF_SPLICE	YES	5	0	0.5	1	0.0305	0.0458	SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29,MMP28->chr17:34083268-34122711:-,matrix_metallopeptidase_28	MSTO211H_PLEURA	0.5	1	0.0763	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	PVT1--MYC	2	2	PVT1	1202	chr8:128806980:+	MYC	32414	chr8:128752642:+	ONLY_REF_SPLICE	YES	3024	1363	0	0	0.0305	0.0305	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	MSTO211H_PLEURA	0	0	0.061	FALSE	0	3	0	4	1	FALSE	ACH-000335
MSTO211H_PLEURA	PRR16--CTD-2334D19.1	2	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	23	0	0.12	1	0.0305	0.0153	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	MSTO211H_PLEURA	0.12	1	0.0458	FALSE	56	216	12	147	0	FALSE	ACH-000335
MSTO211H_PLEURA	C17orf76-AS1--ANXA2	2	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	MSTO211H_PLEURA	1	1	0.0305	TRUE	0	0	0	10	0	TRUE	ACH-000335
MSTO211H_PLEURA	EXOSC5--PIGQ	2	0	EXOSC5	4884	chr19:41895670:-	PIGQ	15704	chr16:624066:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	EXOSC5->chr19:41892279-41903384:-,exosome_component_5,PIGQ->chr16:616995-634136:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_Q	MSTO211H_PLEURA	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	PRIM2--CENPQ	2	0	PRIM2	8956	chr6:57246966:+	CENPQ	32606	chr6:49459857:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	PRIM2->chr6:57179603-57513375:+,primase_(DNA)_subunit_2,CENPQ->centromere_protein_Q,chr6:49431091-49460820:+	MSTO211H_PLEURA	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	RP11-440L14.1--CTBP1	2	0	RP11-440L14.1	1078	chr4:775560:-	CTBP1	11273	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	RP11-440L14.1->chr4:756175-775637:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	MSTO211H_PLEURA	1	1	0.0305	TRUE	0	2	0	7	2	TRUE	ACH-000335
MSTO211H_PLEURA	RP4-717I23.3--EVI5	2	0	RP4-717I23.3	9665	chr1:93790192:-	EVI5	29202	chr1:93170301:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	RP4-717I23.3->chr1:93727743-93811582:-,EVI5->chr1:92974253-93257961:-,ecotropic_viral_integration_site_5	MSTO211H_PLEURA	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	SOCS2-AS1--NPEPPS	2	0	SOCS2-AS1	6468	chr12:93938847:-	NPEPPS	39267	chr17:45695716:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	SOCS2-AS1->SOCS2_antisense_RNA_1,chr12:93936239-93965544:-,NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+	MSTO211H_PLEURA	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	ZNF331--NT5C2	2	0	ZNF331	7495	chr19:54042536:+	NT5C2	28544	chr10:104871562:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0	ZNF331->Oncogene{Bushman},chr19:54024235-54083523:+,zinc_finger_protein_331,NT5C2->5'-nucleotidase,_cytosolic_II,chr10:104845940-104953056:-	MSTO211H_PLEURA	1	1	0.0305	TRUE	0	0	0	1	0	TRUE	ACH-000335
MSTO211H_PLEURA	MYC--PVT1	1	3	MYC	3962	chr8:128751265:+	PVT1	15932	chr8:128902835:+	ONLY_REF_SPLICE	YES	1354	2881	0	0	0.0153	0.0458	NEIGHBORS[53105],MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	MSTO211H_PLEURA	0	0	0.0611	FALSE	0	0	0	1	0	FALSE	ACH-000335
MSTO211H_PLEURA	MYC--PVT1	1	3	MYC	2190	chr8:128748869:+	PVT1	21821	chr8:129001408:+	ONLY_REF_SPLICE	YES	1089	1379	0	0	0.0153	0.0458	NEIGHBORS[53105],MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog,PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+	MSTO211H_PLEURA	0	0	0.0611	FALSE	0	0	0	1	0	FALSE	ACH-000335
MSTO211H_PLEURA	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	2	0	0.67	1	0.0153	0.0458	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MSTO211H_PLEURA	0.67	1	0.0611	FALSE	515	4851	409	746	0	FALSE	ACH-000335
MSTO211H_PLEURA	PVT1--MYC	1	2	PVT1	8346	chr8:128903244:+	MYC	32414	chr8:128752642:+	ONLY_REF_SPLICE	NO	2402	1363	0	0	0.0153	0.0305	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	MSTO211H_PLEURA	0	0	0.0458	FALSE	0	0	0	1	0	FALSE	ACH-000335
MSTO211H_PLEURA	PVT1--MYC	1	2	PVT1	6936	chr8:128867565:+	MYC	32414	chr8:128752642:+	ONLY_REF_SPLICE	NO	3091	1363	0	0	0.0153	0.0305	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	MSTO211H_PLEURA	0	0	0.0458	FALSE	0	1	0	1	0	FALSE	ACH-000335
MSTO211H_PLEURA	CDH13--RP11-22H5.2	1	1	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	72	0	0.03	1	0.0153	0.0153	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	MSTO211H_PLEURA	0.03	1	0.0306	FALSE	14	31	0	36	0	FALSE	ACH-000335
MSTO211H_PLEURA	CHID1--NPM1	1	1	CHID1	14558	chr11:883148:-	NPM1	33953	chr5:170834704:+	ONLY_REF_SPLICE	YES	123	3316	0.02	0	0.0153	0.0153	CHID1->chitinase_domain_containing_1,chr11:867357-915058:-,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	MSTO211H_PLEURA	0	0.02	0.0306	FALSE	0	0	0	1	0	FALSE	ACH-000335
MSTO211H_PLEURA	IGF2BP2--TRA2B	1	1	IGF2BP2	3513	chr3:185538800:-	TRA2B	30253	chr3:185649640:-	ONLY_REF_SPLICE	YES	307	733	0.01	0	0.0153	0.0153	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	MSTO211H_PLEURA	0	0.01	0.0306	FALSE	0	0	0	5	0	FALSE	ACH-000335
MSTO211H_PLEURA	NOP56--EEF2	1	1	NOP56	3803	chr20:2635593:+	EEF2	12701	chr19:3983016:-	ONLY_REF_SPLICE	NO	549	3846	0	0	0.0153	0.0153	NOP56->NOP56_ribonucleoprotein,chr20:2632791-2639039:+,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	MSTO211H_PLEURA	0	0	0.0306	FALSE	0	0	0	1	0	FALSE	ACH-000335
MSTO211H_PLEURA	RAB30-AS1--PICALM	1	1	RAB30-AS1	2382	chr11:82784489:+	PICALM	11823	chr11:85742653:-	ONLY_REF_SPLICE	NO	14	134	0.12	0.01	0.0153	0.0153	RAB30-AS1->RAB30_antisense_RNA_1_(head_to_head),chr11:82783108-82817761:+,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	MSTO211H_PLEURA	0.01	0.12	0.0306	FALSE	0	0	0	2	0	FALSE	ACH-000335
MSTO211H_PLEURA	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0153	0.0153	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	MSTO211H_PLEURA	0.67	1	0.0306	TRUE	160	277	29	98	0	FALSE	ACH-000335
NCIH1341_LUNG	RP1-34H18.1--NAV3	57	20	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.6121	0.2148	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	NCIH1341_LUNG	1	1	0.8269	TRUE	254	575	65	124	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-TA--MT-TC	56	13	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6013	0.1396	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1341_LUNG	1	1	0.7409	FALSE	462	80	0	856	0	FALSE	ACH-000129
NCIH1341_LUNG	TIMM23B--LINC00843	51	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5477	0.2255	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH1341_LUNG	1	1	0.7732	TRUE	508	994	45	981	0	FALSE	ACH-000129
NCIH1341_LUNG	STK40--OSCP1	38	19	STK40	6857	chr1:36826822:-	OSCP1	24864	chr1:36904511:-	ONLY_REF_SPLICE	YES	45	47	0.56	0.55	0.4081	0.204	LOCAL_REARRANGEMENT:-:[29931],STK40->chr1:36805225-36851497:-,serine/threonine_kinase_40,OSCP1->chr1:36881428-36916086:-,organic_solute_carrier_partner_1	NCIH1341_LUNG	0.55	0.56	0.6121	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	ZNF654--HMGB2	33	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3544	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH1341_LUNG	1	1	0.3544	TRUE	0	0	0	518	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-ND6--MT-ND5	31	3	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1450	1	0.02	0.3329	0.0322	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH1341_LUNG	0.02	1	0.3651	FALSE	101	855	57	72	0	FALSE	ACH-000129
NCIH1341_LUNG	TIMM23--RP11-464F9.1	26	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	107	1	0.22	0.97	0.2792	0.0537	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH1341_LUNG	0.22	0.97	0.3329	TRUE	519	3926	326	965	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-ND4--MT-ND4L	5	60	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	3	1	0.96	0.98	0.0537	0.6443	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1341_LUNG	0.96	0.98	0.698	FALSE	344	826	44	306	0	FALSE	ACH-000129
NCIH1341_LUNG	PLXDC1--TAF13	17	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1826	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	NCIH1341_LUNG	1	1	0.1826	TRUE	7	10	0	216	0	FALSE	ACH-000129
NCIH1341_LUNG	MAF--RP11-679B19.2	14	8	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1503	0.0859	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	NCIH1341_LUNG	1	1	0.2362	TRUE	48	25	3	38	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-ND4--MT-ND4L	3	52	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	56	0	0.5	1	0.0322	0.5584	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1341_LUNG	0.5	1	0.5906	FALSE	344	827	44	306	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-TA--MT-TC	11	13	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1181	0.1396	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1341_LUNG	1	1	0.2577	FALSE	462	80	0	856	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-ND4--MT-ND4L	3	42	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	1	0.94	0.98	0.0322	0.451	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1341_LUNG	0.94	0.98	0.4832	FALSE	344	821	44	306	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-CO2--MT-CO1	10	10	MT-CO2	1493	chrM:8078:+	MT-CO1	5625	chrM:6844:+	INCL_NON_REF_SPLICE	YES	0	8819	1	0	0.1074	0.1074	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1341_LUNG	0	1	0.2148	FALSE	36	10	0	27	0	FALSE	ACH-000129
NCIH1341_LUNG	OR51S1--TP53I11	12	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1289	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH1341_LUNG	1	1	0.1289	TRUE	402	216	10	229	0	FALSE	ACH-000129
NCIH1341_LUNG	RP11-123O10.4--GRIP1	10	6	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1074	0.0644	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1341_LUNG	1	1	0.1718	FALSE	416	2512	207	587	0	FALSE	ACH-000129
NCIH1341_LUNG	STK40--OSCP1	9	6	STK40	1174	chr1:36851324:-	OSCP1	24864	chr1:36904511:-	ONLY_REF_SPLICE	YES	33	47	0.31	0.24	0.0966	0.0644	LOCAL_REARRANGEMENT:-:[29931],STK40->chr1:36805225-36851497:-,serine/threonine_kinase_40,OSCP1->chr1:36881428-36916086:-,organic_solute_carrier_partner_1	NCIH1341_LUNG	0.24	0.31	0.161	TRUE	0	1	0	1	1	TRUE	ACH-000129
NCIH1341_LUNG	MT-ND4--MT-ND4L	3	24	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	21	0	0.56	1	0.0322	0.2577	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1341_LUNG	0.56	1	0.2899	FALSE	344	826	44	306	0	FALSE	ACH-000129
NCIH1341_LUNG	RP11-680G10.1--GSE1	7	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	77	1	0.14	0.0752	0.0644	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1341_LUNG	0.14	1	0.1396	TRUE	465	1949	224	605	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-ND4--MT-ND4L	3	20	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0322	0.2148	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1341_LUNG	0.96	1	0.247	FALSE	344	821	44	306	0	FALSE	ACH-000129
NCIH1341_LUNG	NPM1P24--SET	8	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0859	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH1341_LUNG	1	1	0.0859	TRUE	0	0	0	434	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-ATP6--MT-CO1	6	7	MT-ATP6	1400	chrM:8926:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	9075	19531	0	0	0.0644	0.0752	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1341_LUNG	0	0	0.1396	FALSE	183	104	9	328	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-TA--MT-TC	4	15	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0.1611	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1341_LUNG	1	1	0.2041	FALSE	462	80	0	856	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-ND4--MT-ND4L	3	13	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	360	0	0.04	1	0.0322	0.1396	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1341_LUNG	0.04	1	0.1718	FALSE	344	827	44	306	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-ND6--MT-ND5	6	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0644	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH1341_LUNG	1	1	0.0644	FALSE	101	855	57	72	0	FALSE	ACH-000129
NCIH1341_LUNG	NIPA2--POLA1	6	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0644	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	NCIH1341_LUNG	1	1	0.0644	TRUE	46	1352	75	139	0	FALSE	ACH-000129
NCIH1341_LUNG	RP11-96H19.1--RP11-446N19.1	6	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0644	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1341_LUNG	1	1	0.0644	FALSE	515	4851	409	746	0	FALSE	ACH-000129
NCIH1341_LUNG	STK40--OSCP1	4	8	STK40	3533	chr1:36833453:-	OSCP1	24864	chr1:36904511:-	ONLY_REF_SPLICE	YES	37	47	0.24	0.2	0.043	0.0859	LOCAL_REARRANGEMENT:-:[29931],STK40->chr1:36805225-36851497:-,serine/threonine_kinase_40,OSCP1->chr1:36881428-36916086:-,organic_solute_carrier_partner_1	NCIH1341_LUNG	0.2	0.24	0.1289	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	CALM3--MT-ND4L	4	7	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1056	0	0.01	1	0.043	0.0752	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1341_LUNG	0.01	1	0.1182	FALSE	1	1	0	107	0	FALSE	ACH-000129
NCIH1341_LUNG	HSP90AB1--MT-RNR2	5	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0537	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1341_LUNG	1	1	0.0537	FALSE	13	9	0	364	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-CO2--MT-CO1	3	7	MT-CO2	1320	chrM:7905:+	MT-CO1	5227	chrM:6446:+	INCL_NON_REF_SPLICE	YES	3	19790	0.77	0	0.0322	0.0752	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1341_LUNG	0	0.77	0.1074	FALSE	36	10	0	27	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-ND6--MT-ND5	4	3	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	1419	1	0	0.043	0.0322	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH1341_LUNG	0	1	0.0752	FALSE	101	855	57	72	0	FALSE	ACH-000129
NCIH1341_LUNG	RP11-120D5.1--MID1	4	3	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	6	52	0.54	0.12	0.043	0.0322	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1341_LUNG	0.12	0.54	0.0752	FALSE	16	356	14	466	0	FALSE	ACH-000129
NCIH1341_LUNG	RP11-680G10.1--GSE1	3	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	4	1	0.71	0.0322	0.0752	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1341_LUNG	0.71	1	0.1074	TRUE	458	1351	185	561	0	FALSE	ACH-000129
NCIH1341_LUNG	CALM3--MT-ND4L	4	2	CALM3	7150	chr19:47112652:+	MT-ND4L	11633	chrM:10554:+	INCL_NON_REF_SPLICE	YES	996	0	0.01	1	0.043	0.0215	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH1341_LUNG	0.01	1	0.0645	FALSE	1	1	0	107	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-CO2--MT-CO1	4	2	MT-CO2	1278	chrM:7863:+	MT-CO1	5001	chrM:6220:+	INCL_NON_REF_SPLICE	YES	3	17457	0.67	0	0.043	0.0215	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1341_LUNG	0	0.67	0.0645	FALSE	36	10	0	27	0	FALSE	ACH-000129
NCIH1341_LUNG	RP11-123O10.4--GRIP1	4	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0.0107	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH1341_LUNG	1	1	0.0537	FALSE	93	270	15	244	0	FALSE	ACH-000129
NCIH1341_LUNG	HSP90AB1--MT-RNR2	4	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.043	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH1341_LUNG	1	1	0.043	FALSE	13	9	0	364	0	FALSE	ACH-000129
NCIH1341_LUNG	RP1-34H18.1--RP11-781A6.1	4	0	RP1-34H18.1	2982	chr12:77966046:+	RP11-781A6.1	7054	chr12:78177043:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	GTEx_FI:{Adipose_Tissue=[count:43=pct:14.4],Skin=[count:21=pct:6.7],Breast=[count:14=pct:12.6],Blood=[count:3=pct:1.7],Spleen=[count:3=pct:2.7],Nerve=[count:3=pct:1.8],Brain=[count:3=pct:0.5],Heart=[count:3=pct:1.2],Whole_Blood=[count:3=pct:2.3],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Lung=[count:2=pct:1.2],Stomach=[count:2=pct:2.2],Uterus=[count:1=pct:2.3],Ovary=[count:1=pct:1.9],Testis=[count:1=pct:1.0],Bladder=[count:1=pct:11.1],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6]},RP1-34H18.1->chr12:77718421-77966055:+,RP11-781A6.1->chr12:78169563-78177356:+	NCIH1341_LUNG	1	1	0.043	TRUE	94	160	11	37	0	FALSE	ACH-000129
NCIH1341_LUNG	RP11-96H19.1--RP11-446N19.1	4	0	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.043	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH1341_LUNG	1	1	0.043	FALSE	467	2173	244	435	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8016	22249	0	0	0.0322	0.0215	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1341_LUNG	0	0	0.0537	FALSE	183	104	9	328	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-ATP6--MT-CO1	3	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	7914	21392	0	0	0.0322	0.0215	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH1341_LUNG	0	0	0.0537	FALSE	183	104	9	328	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-TA--MT-TC	3	1	MT-TA	1044	chrM:5612:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0322	0.0107	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1341_LUNG	1	1	0.0429	FALSE	462	80	0	856	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-TA--MT-TC	3	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0322	0.0107	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH1341_LUNG	1	1	0.0429	FALSE	462	80	0	856	0	FALSE	ACH-000129
NCIH1341_LUNG	RP11-319G9.5--WWOX	3	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	20	1	0.17	0.0322	0.0107	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	NCIH1341_LUNG	0.17	1	0.0429	FALSE	154	425	28	76	0	FALSE	ACH-000129
NCIH1341_LUNG	MT-ND6--MT-ND5	3	0	MT-ND6	1464	chrM:14210:-	MT-ND5	6321	chrM:14132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0322	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	NCIH1341_LUNG	1	1	0.0322	FALSE	101	855	57	72	0	FALSE	ACH-000129
NCIH1341_LUNG	RNF220--ERI3	2	2	RNF220	8059	chr1:44889811:+	ERI3	33059	chr1:44785416:-	ONLY_REF_SPLICE	YES	127	313	0.03	0.01	0.0215	0.0215	LOCAL_INVERSION:+:-:[49934],RNF220->Oncogene{Bushman},chr1:44870866-45117396:+,ring_finger_protein_220,ERI3->ERI1_exoribonuclease_family_member_3,chr1:44686742-44820932:-	NCIH1341_LUNG	0.01	0.03	0.043	FALSE	0	0	0	2	0	FALSE	ACH-000129
NCIH1341_LUNG	ACO2--AP2S1	2	0	ACO2	1058	chr22:41865186:+	AP2S1	25209	chr19:47342835:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	ACO2->aconitase_2,chr22:41865129-41924993:+,AP2S1->adaptor_related_protein_complex_2_sigma_1_subunit,chr19:47341393-47354249:-	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	ATP5B--RCC2	2	0	ATP5B	3612	chr12:57037187:-	RCC2	19764	chr1:17739674:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-,RCC2->Oncogene{Bushman},chr1:17733256-17766220:-,regulator_of_chromosome_condensation_2	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	BASP1--RP11-321E2.3	2	0	BASP1	4506	chr5:17217919:+	RP11-321E2.3	12944	chr5:17441578:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+,RP11-321E2.3->chr5:17404128-17441803:+	NCIH1341_LUNG	1	1	0.0215	TRUE	0	4	0	4	3	TRUE	ACH-000129
NCIH1341_LUNG	CELF4--PTPN2	2	0	CELF4	1682	chr18:35145319:-	PTPN2	29231	chr18:12836890:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	CELF4->CUGBP,_Elav-like_family_member_4,chr18:34823010-35146000:-,PTPN2->chr18:12785477-12929642:-,protein_tyrosine_phosphatase,_non-receptor_type_2	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCIH1341_LUNG	1	1	0.0215	TRUE	347	1186	183	220	0	FALSE	ACH-000129
NCIH1341_LUNG	IL4I1--CCT6A	2	0	IL4I1	1214	chr19:50432583:-	CCT6A	23681	chr7:56130376:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	IL4I1->chr19:50392911-50432796:-,interleukin_4_induced_1,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	MIR205HG--MCM7	2	0	MIR205HG	4006	chr1:209605170:+	MCM7	16381	chr7:99691024:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	MIR205HG->MIR205_host_gene,chr1:209602165-209606183:+,MCM7->chr7:99690351-99699563:-,minichromosome_maintenance_complex_component_7	NCIH1341_LUNG	1	1	0.0215	TRUE	0	1	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	NDUFA4--PHF14	2	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	NCIH1341_LUNG	1	1	0.0215	TRUE	19	32	3	60	0	FALSE	ACH-000129
NCIH1341_LUNG	NUBP2--PLOD3	2	0	NUBP2	1606	chr16:1833507:+	PLOD3	14975	chr7:100856485:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	NUBP2->chr16:1832902-1839192:+,nucleotide_binding_protein_2,PLOD3->chr7:100849258-100861701:-,procollagen-lysine,2-oxoglutarate_5-dioxygenase_3	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	PPP4R1--CEP76	2	0	PPP4R1	2015	chr18:9614224:-	CEP76	38641	chr18:12686449:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	PPP4R1->chr18:9546789-9615238:-,protein_phosphatase_4_regulatory_subunit_1,CEP76->centrosomal_protein_76,chr18:12661832-12702776:-	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	RAB7A--GINS3	2	0	RAB7A	1238	chr3:128445202:+	GINS3	22007	chr16:58437002:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,GINS3->GINS_complex_subunit_3,chr16:58328984-58440048:+	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	RCC1--GNB1	2	0	RCC1	2175	chr1:28834672:+	GNB1	21015	chr1:1770677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	NCIH1341_LUNG	1	1	0.0215	TRUE	0	10	0	7	3	TRUE	ACH-000129
NCIH1341_LUNG	RP11-120D5.1--MID1	1	4	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	6	34	0.45	0.13	0.0107	0.043	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH1341_LUNG	0.13	0.45	0.0537	FALSE	0	23	1	67	0	FALSE	ACH-000129
NCIH1341_LUNG	SMC4--PGM2	2	0	SMC4	1476	chr3:160117537:+	PGM2	38451	chr4:37850143:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	SMC4->chr3:160117062-160152750:+,structural_maintenance_of_chromosomes_4,PGM2->chr4:37828255-37864558:+,phosphoglucomutase_2	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	SNX13--BZW2	2	0	SNX13	1218	chr7:17979907:-	BZW2	48208	chr7:16705062:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Heart_-_Left_Ventricle=1},SNX13->chr7:17830385-17980124:-,sorting_nexin_13,BZW2->basic_leucine_zipper_and_W2_domains_2,chr7:16685756-16746148:+	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	SSH1--NOM1	2	0	SSH1	6821	chr12:109212025:-	NOM1	39943	chr7:156758964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0215	0	SSH1->chr12:109176466-109251366:-,slingshot_protein_phosphatase_1,NOM1->chr7:156742417-156765876:+,nucleolar_protein_with_MIF4G_domain_1	NCIH1341_LUNG	1	1	0.0215	TRUE	0	0	0	1	0	TRUE	ACH-000129
NCIH1341_LUNG	CTC-786C10.1--GSE1	1	3	CTC-786C10.1	1532	chr16:85205413:+	GSE1	8143	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	4	1	0.5	0.0107	0.0322	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1341_LUNG	0.5	1	0.0429	TRUE	5	1	0	10	0	FALSE	ACH-000129
NCIH1341_LUNG	PROSC--CHMP1A	1	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	367	103	0.01	0.02	0.0107	0.0107	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	NCIH1341_LUNG	0.01	0.02	0.0214	FALSE	13	55	3	29	0	FALSE	ACH-000129
NCIH1341_LUNG	RP11-680G10.1--GSE1	1	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	NO	0	133	1	0.01	0.0107	0.0107	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH1341_LUNG	0.01	1	0.0214	FALSE	64	13	3	59	0	FALSE	ACH-000129
NCIH1341_LUNG	SAP30BP--RNF157	1	1	SAP30BP	3558	chr17:73667943:+	RNF157	19945	chr17:74208563:-	ONLY_REF_SPLICE	YES	178	8	0.01	0.2	0.0107	0.0107	SAP30BP->SAP30_binding_protein,chr17:73663196-73704142:+,RNF157->Oncogene{Bushman},chr17:74138534-74236454:-,ring_finger_protein_157	NCIH1341_LUNG	0.01	0.2	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000129
NCIH1341_LUNG	SPIDR--PRKDC	1	1	SPIDR	13881	chr8:48320523:+	PRKDC	107414	chr8:48719887:-	ONLY_REF_SPLICE	NO	152	573	0.01	0	0.0107	0.0107	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[36801],SPIDR->chr8:48173167-48648868:+,scaffolding_protein_involved_in_DNA_repair,PRKDC->ArcherDX_panel,FoundationOne_panel,chr8:48685669-48872743:-,protein_kinase,_DNA-activated,_catalytic_polypeptide	NCIH1341_LUNG	0	0.01	0.0214	FALSE	0	0	0	1	0	FALSE	ACH-000129
NCIH1341_LUNG	TSPAN5--EIF4E	1	1	TSPAN5	1484	chr4:99579297:-	EIF4E	25720	chr4:99823133:-	ONLY_REF_SPLICE	YES	21	7	0.09	0.22	0.0107	0.0107	{Klijn_CCL:Lung=1},TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,EIF4E->Oncogene{Bushman},chr4:99792835-99851788:-,eukaryotic_translation_initiation_factor_4E	NCIH1341_LUNG	0.09	0.22	0.0214	TRUE	0	0	0	1	0	TRUE	ACH-000129
OVTOKO_OVARY	HIF1A--ICAM3	453	378	HIF1A	1327	chr14:62162557:+	ICAM3	22782	chr19:10450357:-	INCL_NON_REF_SPLICE	YES	349	9	0.7	0.99	4.5587	3.8039	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,ICAM3->chr19:10444452-10450499:-,intercellular_adhesion_molecule_3	OVTOKO_OVARY	0.7	0.99	8.3626	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	TKT--C3orf67	370	224	TKT	1217	chr3:53289852:-	C3orf67	46631	chr3:58739590:-	ONLY_REF_SPLICE	YES	1773	6	0.25	0.99	3.7234	2.2542	{Klijn_CCL:Ovary=1},TKT->chr3:53258723-53290068:-,transketolase,C3orf67->chr3:58703092-59035810:-,chromosome_3_open_reading_frame_67	OVTOKO_OVARY	0.25	0.99	5.9776	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	PUM1--UHRF1	306	6	PUM1	1376	chr1:31538463:-	UHRF1	36460	chr19:4910888:+	ONLY_REF_SPLICE	YES	1	52	1	0.86	3.0794	0.0604	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1	OVTOKO_OVARY	0.86	1	3.1398	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	HIF1A--ICAM3	189	414	HIF1A	1327	chr14:62162557:+	ICAM3	22722	chr19:10450417:-	INCL_NON_REF_SPLICE	YES	349	0	0.63	1	1.902	4.1662	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,ICAM3->chr19:10444452-10450499:-,intercellular_adhesion_molecule_3	OVTOKO_OVARY	0.63	1	6.0682	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	246	38	MT-ND4	1170	chrM:10929:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	26	0	0.92	1	2.4756	0.3824	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.92	1	2.858	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	KDM4B--NKAIN1	175	0	KDM4B	1117	chr19:4969241:+	NKAIN1	38121	chr1:31661034:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.7611	0	KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,NKAIN1->Na+/K+_transporting_ATPase_interacting_1,chr1:31652592-31712401:-	OVTOKO_OVARY	1	1	1.7611	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TC	129	20	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2982	0.2013	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVTOKO_OVARY	1	1	1.4995	FALSE	462	80	0	856	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TN	128	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2881	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVTOKO_OVARY	1	1	1.2881	FALSE	369	2501	205	193	0	FALSE	ACH-000663
OVTOKO_OVARY	HIF1A--ICAM3	92	135	HIF1A	1327	chr14:62162557:+	ICAM3	23515	chr19:10449624:-	ONLY_REF_SPLICE	YES	349	158	0.39	0.59	0.9258	1.3585	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,ICAM3->chr19:10444452-10450499:-,intercellular_adhesion_molecule_3	OVTOKO_OVARY	0.39	0.59	2.2843	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	TIMM23B--LINC00843	102	13	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0265	0.1308	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OVTOKO_OVARY	1	1	1.1573	TRUE	508	994	45	981	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	49	201	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	9419	0	0.03	1	0.4931	2.0227	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.03	1	2.5158	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	93	11	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9359	0.1107	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	1	1	1.0466	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	LAMB2--GPR114	91	15	LAMB2	7412	chr3:49163180:-	GPR114	17127	chr16:57596296:+	ONLY_REF_SPLICE	YES	89	0	0.54	1	0.9158	0.1509	{Klijn_CCL:Ovary=1},LAMB2->chr3:49158547-49170551:-,laminin_subunit_beta_2,GPR114->chr16:57576333-57625593:+	OVTOKO_OVARY	0.54	1	1.0667	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	15	282	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	19	0	0.94	1	0.1509	2.8378	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.94	1	2.9887	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	14	283	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	35	1	0.89	1	0.1409	2.8479	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.89	1	2.9888	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	16	272	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	14	0	0.95	1	0.161	2.7372	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.95	1	2.8982	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	10	288	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	41	0	0.88	1	0.1006	2.8982	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.88	1	2.9988	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	LAMC2--NPL	70	46	LAMC2	14817	chr1:183201992:+	NPL	46211	chr1:182797859:+	ONLY_REF_SPLICE	YES	204	0	0.36	1	0.7044	0.4629	LAMC2->chr1:183155373-183214035:+,laminin_subunit_gamma_2,NPL->N-acetylneuraminate_pyruvate_lyase_(dihydrodipicolinate_synthase),chr1:182758428-182799519:+	OVTOKO_OVARY	0.36	1	1.1673	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	305	MT-ND4	2335	chrM:12094:+	MT-ND4L	5394	chrM:10485:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	3.0693	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	1	1	3.0995	FALSE	263	700	35	281	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	4	297	MT-ND4	2332	chrM:12091:+	MT-ND4L	5529	chrM:10620:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	0.0403	2.9888	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	1	1	3.0291	FALSE	263	700	35	281	0	FALSE	ACH-000663
OVTOKO_OVARY	LAMC2--NPL	62	61	LAMC2	15897	chr1:183203581:+	NPL	46211	chr1:182797859:+	ONLY_REF_SPLICE	YES	178	0	0.41	1	0.6239	0.6139	LAMC2->chr1:183155373-183214035:+,laminin_subunit_gamma_2,NPL->N-acetylneuraminate_pyruvate_lyase_(dihydrodipicolinate_synthase),chr1:182758428-182799519:+	OVTOKO_OVARY	0.41	1	1.2378	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	294	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	947	0	0.24	1	0.0302	2.9586	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.24	1	2.9888	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	5	284	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	NO	29	0	0.91	1	0.0503	2.858	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.91	1	2.9083	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	4	288	MT-ND4	1197	chrM:10956:+	MT-ND4L	5432	chrM:10523:+	INCL_NON_REF_SPLICE	YES	42	0	0.87	1	0.0403	2.8982	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.87	1	2.9385	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	289	MT-ND4	1319	chrM:11078:+	MT-ND4L	5515	chrM:10606:+	INCL_NON_REF_SPLICE	NO	116	0	0.72	1	0.0302	2.9083	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.72	1	2.9385	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	288	MT-ND4	1192	chrM:10951:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	35	0	0.89	1	0.0302	2.8982	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.89	1	2.9284	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	286	MT-ND4	1299	chrM:11058:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	YES	88	1	0.77	1	0.0302	2.8781	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.77	1	2.9083	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	279	MT-ND4	1147	chrM:10906:+	MT-ND4L	5504	chrM:10595:+	INCL_NON_REF_SPLICE	YES	17	0	0.94	1	0.0302	2.8077	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.94	1	2.8379	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	ELMSAN1--HNF1B	70	9	ELMSAN1	2618	chr14:74253805:-	HNF1B	35919	chr17:36070671:-	ONLY_REF_SPLICE	YES	3	28	0.96	0.74	0.7044	0.0906	ELMSAN1->ELM2_and_Myb/SANT_domain_containing_1,chr14:74181825-74256988:-,HNF1B->HNF1_homeobox_B,chr17:36046435-36105237:-	OVTOKO_OVARY	0.74	0.96	0.795	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	71	3	MT-ND4	1151	chrM:10910:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	NO	12977	356	0.01	0.17	0.7145	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0.01	0.17	0.7447	FALSE	230	193	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	275	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	16	1	0.95	1	0.0302	2.7674	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.95	1	2.7976	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	RP11-304L19.5--ABCA3	58	54	RP11-304L19.5	1216	chr16:2205144:-	ABCA3	5737	chr16:2379855:-	ONLY_REF_SPLICE	YES	74	0	0.6	1	0.5837	0.5434	RP11-304L19.5->chr16:2204798-2205359:-,ABCA3->ATP_binding_cassette_subfamily_A_member_3,Oncogene{Bushman},chr16:2325882-2390747:-	OVTOKO_OVARY	0.6	1	1.1271	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	20	204	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	12	0	0.95	1	0.2013	2.0529	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.95	1	2.2542	FALSE	344	821	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	19	198	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	14	0	0.94	1	0.1912	1.9925	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.94	1	2.1837	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	55	34	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.96	1	0.5535	0.3422	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	0.96	1	0.8957	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	5	233	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	14	1	0.94	1	0.0503	2.3447	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.94	1	2.395	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	LLGL1--DRG2	57	22	LLGL1	1177	chr17:18129077:+	DRG2	27931	chr17:18005235:+	ONLY_REF_SPLICE	YES	17	63	0.82	0.56	0.5736	0.2214	{Klijn_CCL:Ovary=1},LLGL1->LLGL1,_scribble_cell_polarity_complex_component,chr17:18128901-18148189:+,DRG2->chr17:17991200-18011285:+,developmentally_regulated_GTP_binding_protein_2	OVTOKO_OVARY	0.56	0.82	0.795	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	232	MT-ND4	1471	chrM:11230:+	MT-ND4L	5601	chrM:10692:+	INCL_NON_REF_SPLICE	YES	621	0	0.27	1	0.0302	2.3347	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.27	1	2.3649	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	59	7	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	16216	4	0	0.94	0.5937	0.0704	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.94	0.6641	FALSE	230	193	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TN	31	117	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.312	1.1774	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVTOKO_OVARY	1	1	1.4894	FALSE	369	2501	205	193	0	FALSE	ACH-000663
OVTOKO_OVARY	UBTD1--RP11-452K12.4	55	15	UBTD1	1406	chr10:99259030:+	RP11-452K12.4	9115	chr10:99102564:+	ONLY_REF_SPLICE	YES	35	0	0.67	1	0.5535	0.1509	UBTD1->chr10:99258625-99330966:+,ubiquitin_domain_containing_1,RP11-452K12.4->chr10:99094321-99102770:+	OVTOKO_OVARY	0.67	1	0.7044	TRUE	0	1	0	1	1	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	6	203	MT-ND4	1292	chrM:11051:+	MT-ND4L	5608	chrM:10699:+	INCL_NON_REF_SPLICE	YES	83	0	0.72	1	0.0604	2.0428	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.72	1	2.1032	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	TIMM23--RP11-464F9.1	55	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.5535	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OVTOKO_OVARY	1	1	0.5535	TRUE	519	3926	326	965	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	206	MT-ND4	1178	chrM:10937:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	30	0	0.87	1	0.0302	2.073	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.87	1	2.1032	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TN	53	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5334	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVTOKO_OVARY	1	1	0.5334	FALSE	369	2501	205	193	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	4	188	MT-ND4	1279	chrM:11038:+	MT-ND4L	5615	chrM:10706:+	INCL_NON_REF_SPLICE	YES	73	0	0.72	1	0.0403	1.8919	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.72	1	1.9322	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	4	183	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	86	0	0.68	1	0.0403	1.8416	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.68	1	1.8819	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	4	179	MT-ND4	1062	chrM:10821:+	MT-ND4L	5516	chrM:10607:+	INCL_NON_REF_SPLICE	YES	11	0	0.94	1	0.0403	1.8013	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.94	1	1.8416	FALSE	344	821	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TN	27	82	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2717	0.8252	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVTOKO_OVARY	1	1	1.0969	FALSE	369	2501	205	193	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	38	27	MT-ND4	2053	chrM:11812:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19276	78	0	0.45	0.3824	0.2717	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.45	0.6541	FALSE	231	215	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	RP11-304L19.5--ABCA3	30	57	RP11-304L19.5	1499	chr16:2204861:-	ABCA3	5737	chr16:2379855:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3019	0.5736	RP11-304L19.5->chr16:2204798-2205359:-,ABCA3->ATP_binding_cassette_subfamily_A_member_3,Oncogene{Bushman},chr16:2325882-2390747:-	OVTOKO_OVARY	1	1	0.8755	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	41	11	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4126	0.1107	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	1	1	0.5233	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TN	34	39	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3422	0.3925	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVTOKO_OVARY	1	1	0.7347	FALSE	369	2501	205	193	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	41	7	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16197	6	0	0.89	0.4126	0.0704	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.89	0.483	FALSE	230	198	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	27	63	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	17575	0	0.01	1	0.2717	0.634	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.01	1	0.9057	FALSE	328	800	43	304	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	159	MT-ND4	1170	chrM:10929:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	26	0	0.86	1	0.0302	1.6001	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.86	1	1.6303	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TN	28	58	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2818	0.5837	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVTOKO_OVARY	1	1	0.8655	FALSE	369	2501	205	193	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TN	34	34	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3422	0.3422	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVTOKO_OVARY	1	1	0.6844	FALSE	369	2501	205	193	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	30	42	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12673	0	0.01	1	0.3019	0.4227	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.01	1	0.7246	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	RFC1--RP11-99J16__A.2	34	16	RFC1	18511	chr4:39310256:-	RP11-99J16__A.2	35806	chr1:230912494:-	ONLY_REF_SPLICE	YES	84	4	0.37	0.93	0.3422	0.161	RFC1->chr4:39289076-39367995:-,replication_factor_C_subunit_1,RP11-99J16__A.2->chr1:230846444-230931238:-	OVTOKO_OVARY	0.37	0.93	0.5032	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	ZNF654--HMGB2	38	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3824	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OVTOKO_OVARY	1	1	0.3824	TRUE	0	0	0	518	0	FALSE	ACH-000663
OVTOKO_OVARY	HIF1A--ICAM3	4	135	HIF1A	1327	chr14:62162557:+	ICAM3	23218	chr19:10449921:-	ONLY_REF_SPLICE	YES	349	177	0.28	0.44	0.0403	1.3585	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,ICAM3->chr19:10444452-10450499:-,intercellular_adhesion_molecule_3	OVTOKO_OVARY	0.28	0.44	1.3988	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	5	128	MT-ND4	1144	chrM:10903:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	16	0	0.89	1	0.0503	1.2881	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.89	1	1.3384	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	129	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	22	0	0.86	1	0.0302	1.2982	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.86	1	1.3284	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	128	MT-ND4	1201	chrM:10960:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	46	0	0.74	1	0.0302	1.2881	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.74	1	1.3183	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	VPS13C--NPM1P47	33	7	VPS13C	3286	chr15:62333523:-	NPM1P47	94083	chr15:62375188:-	INCL_NON_REF_SPLICE	YES	3	1	0.93	0.98	0.3321	0.0704	LOCAL_REARRANGEMENT:-:[21977],VPS13C->chr15:62144588-62352672:-,vacuolar_protein_sorting_13_homolog_C,NPM1P47->chr15:62374649-62375504:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_47	OVTOKO_OVARY	0.93	0.98	0.4025	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	126	MT-ND4	1144	chrM:10903:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	16	0	0.89	1	0.0302	1.268	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.89	1	1.2982	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	28	17	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22337	6	0	0.88	0.2818	0.1711	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.88	0.4529	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	PUM1--UHRF1	32	1	PUM1	1376	chr1:31538463:-	UHRF1	37623	chr19:4929234:+	ONLY_REF_SPLICE	YES	1	93	0.97	0.26	0.322	0.0101	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1	OVTOKO_OVARY	0.26	0.97	0.3321	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	20	41	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1381	0	0.04	1	0.2013	0.4126	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.04	1	0.6139	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TC	26	15	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2616	0.1509	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVTOKO_OVARY	1	1	0.4125	FALSE	462	80	0	856	0	FALSE	ACH-000663
OVTOKO_OVARY	HIF1A--ICAM3	22	24	HIF1A	1327	chr14:62162557:+	ICAM3	24782	chr19:10446652:-	ONLY_REF_SPLICE	YES	349	381	0.12	0.11	0.2214	0.2415	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,ICAM3->chr19:10444452-10450499:-,intercellular_adhesion_molecule_3	OVTOKO_OVARY	0.11	0.12	0.4629	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MAPKAPK2--RASSF5	26	7	MAPKAPK2	1565	chr1:206858853:+	RASSF5	15305	chr1:206756601:+	ONLY_REF_SPLICE	YES	32	0	0.51	1	0.2616	0.0704	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[95673],MAPKAPK2->Oncogene{Bushman},chr1:206858289-206907628:+,mitogen-activated_protein_kinase-activated_protein_kinase_2,RASSF5->Ras_association_domain_family_member_5,chr1:206680879-206762616:+	OVTOKO_OVARY	0.51	1	0.332	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TC	27	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2717	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVTOKO_OVARY	1	1	0.2717	FALSE	462	80	0	856	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	14	49	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.94	1	0.1409	0.4931	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	0.94	1	0.634	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	89	MT-ND4	1093	chrM:10852:+	MT-ND4L	5637	chrM:10728:+	INCL_NON_REF_SPLICE	YES	16	0	0.85	1	0.0302	0.8956	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.85	1	0.9258	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	18	29	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1811	0.2918	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	1	1	0.4729	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	88	MT-ND4	1073	chrM:10832:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	12	0	0.88	1	0.0302	0.8856	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.88	1	0.9158	FALSE	344	821	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	4	84	MT-ND4	1117	chrM:10876:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	15	0	0.85	1	0.0403	0.8453	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.85	1	0.8856	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	5	79	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	12	0	0.88	1	0.0503	0.795	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.88	1	0.8453	FALSE	344	821	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	TKT--C3orf67	4	81	TKT	1217	chr3:53289852:-	C3orf67	47795	chr3:58728299:-	ONLY_REF_SPLICE	YES	1773	10	0.05	0.89	0.0403	0.8151	{Klijn_CCL:Ovary=1},TKT->chr3:53258723-53290068:-,transketolase,C3orf67->chr3:58703092-59035810:-,chromosome_3_open_reading_frame_67	OVTOKO_OVARY	0.05	0.89	0.8554	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	CDK15--FOLR2	23	3	CDK15	7895	chr2:202688450:+	FOLR2	29869	chr11:71931914:+	ONLY_REF_SPLICE	YES	1	6	0.96	0.81	0.2315	0.0302	{Klijn_CCL:Ovary=1},CDK15->chr2:202655184-202760273:+,cyclin-dependent_kinase_15,FOLR2->chr11:71927645-71932994:+,folate_receptor_beta	OVTOKO_OVARY	0.81	0.96	0.2617	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	13	41	MT-ND4	1447	chrM:11206:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	516	0	0.09	1	0.1308	0.4126	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.09	1	0.5434	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	TKT--C3orf67	20	13	TKT	1217	chr3:53289852:-	C3orf67	50431	chr3:58720285:-	ONLY_REF_SPLICE	YES	1773	2	0.02	0.94	0.2013	0.1308	{Klijn_CCL:Ovary=1},TKT->chr3:53258723-53290068:-,transketolase,C3orf67->chr3:58703092-59035810:-,chromosome_3_open_reading_frame_67	OVTOKO_OVARY	0.02	0.94	0.3321	TRUE	0	0	0	1	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND3--MT-ATP8	23	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2315	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	1	1	0.2315	FALSE	351	233	23	137	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TN	8	60	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0805	0.6038	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVTOKO_OVARY	1	1	0.6843	FALSE	369	2501	205	193	0	FALSE	ACH-000663
OVTOKO_OVARY	SYNRG--SLC22A20	18	19	SYNRG	14255	chr17:35928893:-	SLC22A20	47893	chr11:65003880:+	ONLY_REF_SPLICE	YES	7	1	0.84	0.97	0.1811	0.1912	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,SLC22A20->chr11:64981311-65010228:+,solute_carrier_family_22_member_20	OVTOKO_OVARY	0.84	0.97	0.3723	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	ELF2--CCDC148	21	6	ELF2	1252	chr4:140098121:-	CCDC148	41915	chr2:159035508:-	ONLY_REF_SPLICE	YES	12	0	0.69	1	0.2113	0.0604	ELF2->E74_like_ETS_transcription_factor_2,chr4:139949266-140098372:-,CCDC148->chr2:159027593-159313265:-,coiled-coil_domain_containing_148	OVTOKO_OVARY	0.69	1	0.2717	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	7	62	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1190	0	0.05	1	0.0704	0.6239	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.05	1	0.6943	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	76	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	3	0	0.96	1	0.0302	0.7648	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.96	1	0.795	FALSE	344	821	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	14	32	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	35	0	0.57	1	0.1409	0.322	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.57	1	0.4629	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	13	36	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	10	0	0.83	1	0.1308	0.3623	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.83	1	0.4931	FALSE	344	821	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	7	59	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	31	0	0.68	1	0.0704	0.5937	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.68	1	0.6641	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	4	71	MT-ND6	1118	chrM:14556:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	1	0	0.99	1	0.0403	0.7145	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	0.99	1	0.7548	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	HIF1A--ICAM3	5	66	HIF1A	1327	chr14:62162557:+	ICAM3	23600	chr19:10449539:-	ONLY_REF_SPLICE	YES	349	155	0.17	0.31	0.0503	0.6642	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,ICAM3->chr19:10444452-10450499:-,intercellular_adhesion_molecule_3	OVTOKO_OVARY	0.17	0.31	0.7145	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	3	74	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.7447	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	1	1	0.7749	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	11	41	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	722	0	0.07	1	0.1107	0.4126	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.07	1	0.5233	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TN	8	53	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0805	0.5334	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVTOKO_OVARY	1	1	0.6139	FALSE	369	2501	205	193	0	FALSE	ACH-000663
OVTOKO_OVARY	CEP250--ATG3	18	12	CEP250	31279	chr20:34092833:+	ATG3	47667	chr3:112257027:-	ONLY_REF_SPLICE	YES	62	97	0.33	0.24	0.1811	0.1208	CEP250->centrosomal_protein_250,chr20:34042985-34099804:+,ATG3->autophagy_related_3,chr3:112251356-112280893:-	OVTOKO_OVARY	0.24	0.33	0.3019	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	72	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	3	0	0.96	1	0.0302	0.7246	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.96	1	0.7548	FALSE	344	821	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	6	59	MT-ND4	1201	chrM:10960:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	46	0	0.59	1	0.0604	0.5937	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.59	1	0.6541	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	11	38	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	22	0	0.69	1	0.1107	0.3824	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.69	1	0.4931	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	CDK15--FOLR2	19	5	CDK15	7895	chr2:202688450:+	FOLR2	28695	chr11:71929605:+	ONLY_REF_SPLICE	YES	1	0	0.96	1	0.1912	0.0503	{Klijn_CCL:Ovary=1},CDK15->chr2:202655184-202760273:+,cyclin-dependent_kinase_15,FOLR2->chr11:71927645-71932994:+,folate_receptor_beta	OVTOKO_OVARY	0.96	1	0.2415	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	69	MT-ND4	1277	chrM:11036:+	MT-ND4L	5652	chrM:10743:+	INCL_NON_REF_SPLICE	YES	71	0	0.5	1	0.0302	0.6944	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.5	1	0.7246	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	19	4	MT-ND4	1152	chrM:10911:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	13013	2	0	0.92	0.1912	0.0403	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.92	0.2315	FALSE	230	193	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	NEMF--RP11-58E21.5	20	0	NEMF	6160	chr14:50307436:-	RP11-58E21.5	36708	chr14:50555913:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2013	0	NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,RP11-58E21.5->chr14:50505863-50555913:-	OVTOKO_OVARY	1	1	0.2013	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	RFC1--RP11-99J16__A.2	18	8	RFC1	17114	chr4:39313065:-	RP11-99J16__A.2	35806	chr1:230912494:-	ONLY_REF_SPLICE	YES	60	4	0.3	0.87	0.1811	0.0805	RFC1->chr4:39289076-39367995:-,replication_factor_C_subunit_1,RP11-99J16__A.2->chr1:230846444-230931238:-	OVTOKO_OVARY	0.3	0.87	0.2616	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	KTN1--RP13-735L24.1	17	11	KTN1	24024	chr14:56115588:+	RP13-735L24.1	60440	chr12:9547127:+	ONLY_REF_SPLICE	YES	275	0	0.09	1	0.1711	0.1107	KTN1->Oncogene{Bushman},chr14:56025790-56168244:+,kinectin_1,RP13-735L24.1->chr12:9520060-9550213:+	OVTOKO_OVARY	0.09	1	0.2818	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	4	63	MT-ND4	1843	chrM:11602:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	14419	0	0	1	0.0403	0.634	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0	1	0.6743	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	5	59	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	38	0	0.63	1	0.0503	0.5937	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.63	1	0.644	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	4	63	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	8791	0	0.01	1	0.0403	0.634	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.01	1	0.6743	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	10	39	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	44	0	0.53	1	0.1006	0.3925	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.53	1	0.4931	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	12	30	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3415	78	0.01	0.35	0.1208	0.3019	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0.01	0.35	0.4227	FALSE	216	209	16	281	0	FALSE	ACH-000663
OVTOKO_OVARY	HIF1A--ICAM3	4	61	HIF1A	1327	chr14:62162557:+	ICAM3	23615	chr19:10449524:-	INCL_NON_REF_SPLICE	YES	349	174	0.16	0.27	0.0403	0.6139	HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,ICAM3->chr19:10444452-10450499:-,intercellular_adhesion_molecule_3	OVTOKO_OVARY	0.16	0.27	0.6542	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	RP11-304L19.5--ABCA3	5	57	RP11-304L19.5	1504	chr16:2204856:-	ABCA3	5737	chr16:2379855:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0.5736	RP11-304L19.5->chr16:2204798-2205359:-,ABCA3->ATP_binding_cassette_subfamily_A_member_3,Oncogene{Bushman},chr16:2325882-2390747:-	OVTOKO_OVARY	1	1	0.6239	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	NEMF--C14orf183	19	0	NEMF	6160	chr14:50307436:-	C14orf183	38874	chr14:50555913:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1912	0	{Klijn_CCL:Ovary=1},NEMF->chr14:50249997-50319921:-,nuclear_export_mediator_factor,C14orf183->chr14:50550369-50559361:-	OVTOKO_OVARY	1	1	0.1912	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	RFC1--RP11-99J16__A.2	18	4	RFC1	17114	chr4:39313065:-	RP11-99J16__A.2	37474	chr1:230846599:-	ONLY_REF_SPLICE	YES	60	0	0.27	1	0.1811	0.0403	RFC1->chr4:39289076-39367995:-,replication_factor_C_subunit_1,RP11-99J16__A.2->chr1:230846444-230931238:-	OVTOKO_OVARY	0.27	1	0.2214	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	4	59	MT-ND4	1209	chrM:10968:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	42	0	0.6	1	0.0403	0.5937	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.6	1	0.634	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	DCDC2--GPLD1	18	2	DCDC2	8984	chr6:24205230:-	GPLD1	18731	chr6:24489725:-	ONLY_REF_SPLICE	YES	258	0	0.07	1	0.1811	0.0201	LOCAL_REARRANGEMENT:-:[66513],DCDC2->chr6:24171984-24358280:-,doublecortin_domain_containing_2,GPLD1->chr6:24424793-24495433:-,glycosylphosphatidylinositol_specific_phospholipase_D1	OVTOKO_OVARY	0.07	1	0.2012	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TN	3	62	MT-TA	1051	chrM:5605:-	MT-TN	4091	chrM:5708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.6239	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVTOKO_OVARY	1	1	0.6541	FALSE	369	2501	205	193	0	FALSE	ACH-000663
OVTOKO_OVARY	LLGL1--DRG2	15	12	LLGL1	1177	chr17:18129077:+	DRG2	29008	chr17:18007115:+	ONLY_REF_SPLICE	YES	17	57	0.61	0.32	0.1509	0.1208	{Klijn_CCL:Ovary=1},LLGL1->LLGL1,_scribble_cell_polarity_complex_component,chr17:18128901-18148189:+,DRG2->chr17:17991200-18011285:+,developmentally_regulated_GTP_binding_protein_2	OVTOKO_OVARY	0.32	0.61	0.2717	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	58	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	3	0	0.95	1	0.0302	0.5837	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.95	1	0.6139	FALSE	344	821	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	58	MT-ND4	1164	chrM:10923:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	22	0	0.73	1	0.0302	0.5837	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.73	1	0.6139	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	5	49	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	6	0	0.9	1	0.0503	0.4931	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	0.9	1	0.5434	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	16	4	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	12977	0	0	1	0.161	0.0403	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.2013	FALSE	230	193	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TN	17	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1711	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVTOKO_OVARY	1	1	0.1711	FALSE	369	2501	205	193	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	10	24	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	22385	0	0	1	0.1006	0.2415	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.3421	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	5	42	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	16	0	0.75	1	0.0503	0.4227	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.75	1	0.473	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TC	10	22	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1006	0.2214	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVTOKO_OVARY	1	1	0.322	FALSE	462	80	0	856	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	5	40	MT-ND4	2226	chrM:11985:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	6305	0	0.01	1	0.0503	0.4025	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0.01	1	0.4528	FALSE	216	209	16	281	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	8	28	MT-ND4	2176	chrM:11935:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10856	78	0	0.32	0.0805	0.2818	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.32	0.3623	FALSE	231	215	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TN	15	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1509	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVTOKO_OVARY	1	1	0.1509	FALSE	369	2501	205	193	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	13	7	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16348	78	0	0.2	0.1308	0.0704	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.2	0.2012	FALSE	230	198	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	5	39	MT-ND4	1195	chrM:10954:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	38	0	0.54	1	0.0503	0.3925	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.54	1	0.4428	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	7	30	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7077	78	0.01	0.32	0.0704	0.3019	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0.01	0.32	0.3723	FALSE	218	210	16	281	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	8	25	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20828	78	0	0.3	0.0805	0.2516	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.3	0.3321	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	5	37	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	5	0	0.89	1	0.0503	0.3723	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	0.89	1	0.4226	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TN	14	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1409	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVTOKO_OVARY	1	1	0.1409	FALSE	369	2501	205	193	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	11	11	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	22194	1772	0	0.01	0.1107	0.1107	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.01	0.2214	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	4	39	MT-ND4	1192	chrM:10951:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	35	0	0.55	1	0.0403	0.3925	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.55	1	0.4328	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	4	39	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	42	0	0.51	1	0.0403	0.3925	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.51	1	0.4328	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TY	13	3	MT-TA	1054	chrM:5602:-	MT-TY	4089	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1308	0.0302	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVTOKO_OVARY	1	1	0.161	FALSE	13	214	14	42	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	8	22	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	21663	78	0	0.28	0.0805	0.2214	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.28	0.3019	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	8	22	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	21732	0	0	1	0.0805	0.2214	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.3019	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	9	18	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	84	0	0.24	1	0.0906	0.1811	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.24	1	0.2717	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	5	34	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0503	0.3422	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	0.95	1	0.3925	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	4	37	MT-ND4	1144	chrM:10903:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	16	0	0.72	1	0.0403	0.3723	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.72	1	0.4126	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	40	MT-ND4	2263	chrM:12022:+	MT-ATP8	5454	chrM:8441:+	INCL_NON_REF_SPLICE	YES	1781	0	0.02	1	0.0302	0.4025	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0.02	1	0.4327	FALSE	216	209	16	281	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	7	24	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	22314	0	0	1	0.0704	0.2415	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.3119	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	11	8	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19212	6	0	0.76	0.1107	0.0805	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.76	0.1912	FALSE	231	205	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	40	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	7586	0	0.01	1	0.0302	0.4025	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0.01	1	0.4327	FALSE	222	212	16	282	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	40	MT-ND4	1285	chrM:11044:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	NO	80	0	0.35	1	0.0302	0.4025	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.35	1	0.4327	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	9	16	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0906	0.161	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	0.96	1	0.2516	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	3	39	MT-ND6	1159	chrM:14515:-	MT-TE	4559	chrM:14709:-	INCL_NON_REF_SPLICE	YES	2	0	0.95	1	0.0302	0.3925	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	0.95	1	0.4227	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	12	2	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	11	0	0.56	1	0.1208	0.0201	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.56	1	0.1409	FALSE	344	821	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	5	29	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	22741	0	0	1	0.0503	0.2918	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.3421	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	5	29	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	22646	0	0	1	0.0503	0.2918	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.3421	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	6	25	MT-ND4	1998	chrM:11757:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	21419	6	0	0.84	0.0604	0.2516	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.84	0.312	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	4	33	MT-ND4	2283	chrM:12042:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	90	78	0.29	0.32	0.0403	0.3321	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0.29	0.32	0.3724	FALSE	213	207	15	279	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	6	23	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	20828	270	0	0.1	0.0604	0.2315	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.1	0.2919	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	8	14	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	22554	997	0	0.02	0.0805	0.1409	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.02	0.2214	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	4	30	MT-ND4	1944	chrM:11703:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	22334	0	0	1	0.0403	0.3019	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.3422	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	8	13	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22765	78	0	0.21	0.0805	0.1308	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.21	0.2113	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TC	7	17	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0704	0.1711	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVTOKO_OVARY	1	1	0.2415	FALSE	462	80	0	856	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	11	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1107	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	1	1	0.1107	FALSE	344	821	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	10	3	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	10284	0	0	1	0.1006	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.1308	FALSE	230	193	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	9	7	MT-ND4	1195	chrM:10954:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	15282	78	0	0.17	0.0906	0.0704	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.17	0.161	FALSE	230	193	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	31	MT-ND4	2326	chrM:12085:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	123	1	0.22	0.0302	0.312	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0.22	1	0.3422	FALSE	209	205	15	279	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	30	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	22257	0	0	1	0.0302	0.3019	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.3321	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	30	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	22510	0	0	1	0.0302	0.3019	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.3321	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	8	10	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	23228	659	0	0.03	0.0805	0.1006	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.03	0.1811	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	30	MT-ND4	1859	chrM:11618:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	21638	0	0	1	0.0302	0.3019	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.3321	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	6	18	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	46	0	0.34	1	0.0604	0.1811	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.34	1	0.2415	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	9	6	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.94	0.0906	0.0604	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.94	1	0.151	FALSE	344	821	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	6	18	MT-ND4	1222	chrM:10981:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	48	0	0.33	1	0.0604	0.1811	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.33	1	0.2415	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	NRIP1--AF127936.7	10	2	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	3	1	0.8	0.1006	0.0201	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OVTOKO_OVARY	0.8	1	0.1207	FALSE	292	1546	117	613	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	4	25	MT-ND4	1787	chrM:11546:+	MT-ATP8	5393	chrM:8380:+	INCL_NON_REF_SPLICE	YES	22141	0	0	1	0.0403	0.2516	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.2919	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	6	17	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	22310	0	0	1	0.0604	0.1711	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.2315	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	28	MT-ND4	1828	chrM:11587:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	21663	0	0	1	0.0302	0.2818	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.312	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	4	24	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	22066	0	0	1	0.0403	0.2415	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.2818	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	10	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1006	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	1	1	0.1006	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TY	10	0	MT-TA	1059	chrM:5597:-	MT-TY	4122	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1006	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVTOKO_OVARY	1	1	0.1006	FALSE	13	214	14	42	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	9	3	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	9606	0	0	1	0.0906	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.1208	FALSE	230	193	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	8	7	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	16162	6	0	0.71	0.0805	0.0704	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.71	0.1509	FALSE	230	193	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	9	2	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	17593	2130	0	0.01	0.0906	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.01	0.1107	FALSE	231	204	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	7	10	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	22337	1066	0	0.02	0.0704	0.1006	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.02	0.171	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	4	22	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	21483	0	0	1	0.0403	0.2214	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.2617	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	9	1	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	5	0	0.67	1	0.0906	0.0101	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.67	1	0.1007	FALSE	344	821	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	7	8	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	17005	0	0	1	0.0704	0.0805	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.1509	FALSE	231	204	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	3	24	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.2415	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	1	1	0.2717	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	7	7	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	16216	6	0	0.7	0.0704	0.0704	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.7	0.1408	FALSE	230	193	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	5	15	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	22292	0	0	1	0.0503	0.1509	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.2012	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	8	3	MT-ND4	1269	chrM:11028:+	MT-ATP8	5544	chrM:8531:+	INCL_NON_REF_SPLICE	YES	18967	2045	0	0.01	0.0805	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.01	0.1107	FALSE	231	205	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	4	18	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	38	0	0.37	1	0.0403	0.1811	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.37	1	0.2214	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	6	9	MT-ND4	1263	chrM:11022:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	18490	1	0	0.94	0.0604	0.0906	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.94	0.151	FALSE	231	205	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	21	MT-ND4	1592	chrM:11351:+	MT-ATP8	5430	chrM:8417:+	INCL_NON_REF_SPLICE	YES	23016	0	0	1	0.0302	0.2113	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.2415	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	6	9	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	16228	0	0	1	0.0604	0.0906	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.151	FALSE	230	197	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	20	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	22793	0	0	1	0.0302	0.2013	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.2315	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	20	MT-ND4	1544	chrM:11303:+	MT-ATP8	5455	chrM:8442:+	INCL_NON_REF_SPLICE	YES	24544	0	0	1	0.0302	0.2013	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.2315	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	6	8	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20702	78	0	0.15	0.0604	0.0805	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.15	0.1409	FALSE	231	205	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TC	3	20	MT-TA	1063	chrM:5593:-	MT-TC	4102	chrM:5794:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.2013	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVTOKO_OVARY	1	1	0.2315	FALSE	462	80	0	856	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	4	15	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	22242	0	0	1	0.0403	0.1509	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.1912	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	4	15	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	22879	0	0	1	0.0403	0.1509	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.1912	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	5	11	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	21949	1	0	0.94	0.0503	0.1107	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.94	0.161	FALSE	231	216	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	18	MT-ND4	1523	chrM:11282:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	NO	24437	0	0	1	0.0302	0.1811	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.2113	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	5	10	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	22156	1136	0	0.01	0.0503	0.1006	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.01	0.1509	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	18	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	84	0	0.2	1	0.0302	0.1811	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.2	1	0.2113	FALSE	344	827	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	4	14	MT-ND4	1008	chrM:10767:+	MT-ND4L	5567	chrM:10658:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.95	0.0403	0.1409	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.95	1	0.1812	FALSE	344	821	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	4	13	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	22835	0	0	1	0.0403	0.1308	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.1711	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	4	13	MT-ND4	1386	chrM:11145:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	23228	0	0	1	0.0403	0.1308	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.1711	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	17	MT-ND4	1779	chrM:11538:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22303	6	0	0.77	0.0302	0.1711	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.77	0.2013	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	17	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	22161	0	0	1	0.0302	0.1711	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.2013	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	RP11-59N23.1--CMAS	7	1	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	4	68	0.67	0.11	0.0704	0.0101	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	OVTOKO_OVARY	0.11	0.67	0.0805	TRUE	21	102	17	28	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND3--MT-ATP8	7	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0704	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	1	1	0.0704	FALSE	351	233	23	137	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	5	8	MT-ND4	1209	chrM:10968:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	16216	0	0	1	0.0503	0.0805	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.1308	FALSE	230	193	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	16	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	24811	78	0	0.2	0.0302	0.161	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.2	0.1912	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	16	MT-ND4	1908	chrM:11667:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	22448	587	0	0.03	0.0302	0.161	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.03	0.1912	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	16	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	16	0	0.54	1	0.0302	0.161	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.54	1	0.1912	FALSE	344	826	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TC	3	16	MT-TA	1054	chrM:5602:-	MT-TC	4079	chrM:5817:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.161	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVTOKO_OVARY	1	1	0.1912	FALSE	462	80	0	856	0	FALSE	ACH-000663
OVTOKO_OVARY	RP11-123O10.4--GRIP1	7	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0704	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OVTOKO_OVARY	1	1	0.0704	FALSE	416	2512	207	587	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	4	11	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	24534	940	0	0.02	0.0403	0.1107	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.02	0.151	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	RP11-973F15.1--RP11-96B2.1	6	2	RP11-973F15.1	3763	chr8:123682599:-	RP11-96B2.1	7930	chr8:123499705:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0.0201	RP11-973F15.1->chr8:123682624-123706345:-,RP11-96B2.1->chr8:123497754-123502054:-	OVTOKO_OVARY	1	1	0.0805	TRUE	0	2	0	4	2	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	13	MT-ND4	1477	chrM:11236:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	22313	6	0	0.73	0.0302	0.1308	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.73	0.161	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	6	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	1	1	0.0604	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	6	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	1	1	0.0604	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	11	MT-ND4	1521	chrM:11280:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	24251	719	0	0.02	0.0302	0.1107	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.02	0.1409	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	4	7	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	21663	2106	0	0.01	0.0403	0.0704	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.01	0.1107	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	5	3	MT-ND4	1144	chrM:10903:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12159	6	0	0.57	0.0503	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.57	0.0805	FALSE	230	193	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	4	7	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	22144	2106	0	0.01	0.0403	0.0704	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.01	0.1107	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TC	3	11	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.1107	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVTOKO_OVARY	1	1	0.1409	FALSE	462	80	0	856	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TY	5	3	MT-TA	1057	chrM:5599:-	MT-TY	4092	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0.0302	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVTOKO_OVARY	1	1	0.0805	FALSE	13	214	14	42	0	FALSE	ACH-000663
OVTOKO_OVARY	RP11-96H19.1--RP11-446N19.1	5	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0503	0.0302	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVTOKO_OVARY	1	1	0.0805	FALSE	467	2173	244	435	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	10	MT-ND4	2050	chrM:11809:+	MT-ATP8	5528	chrM:8515:+	INCL_NON_REF_SPLICE	YES	19346	2097	0	0.01	0.0302	0.1006	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.01	0.1308	FALSE	231	215	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	RP11-96H19.1--RP11-446N19.1	5	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0503	0.0201	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVTOKO_OVARY	0.88	1	0.0704	FALSE	515	4851	409	746	0	FALSE	ACH-000663
OVTOKO_OVARY	FTH1--ACTG1	5	1	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	2184	0	0	1	0.0503	0.0101	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	OVTOKO_OVARY	0	1	0.0604	FALSE	0	0	0	64	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	9	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	YES	16845	0	0	1	0.0302	0.0906	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.1208	FALSE	231	204	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND3--MT-ATP8	5	0	MT-ND3	1048	chrM:10106:+	MT-ATP8	4405	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	1	1	0.0503	FALSE	351	233	23	137	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	5	0	MT-ND4	1017	chrM:10776:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	1	1	0.0503	FALSE	230	190	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	5	0	MT-ND6	1034	chrM:14640:-	MT-TE	4578	chrM:14690:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	1	1	0.0503	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	5	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	1	1	0.0503	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TN	5	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVTOKO_OVARY	1	1	0.0503	FALSE	369	2501	205	193	0	FALSE	ACH-000663
OVTOKO_OVARY	SBNO2--MED16	5	0	SBNO2	1112	chr19:1174171:-	MED16	41897	chr19:871253:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0503	0	SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),MED16->chr19:867962-893218:-,mediator_complex_subunit_16	OVTOKO_OVARY	1	1	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	SBNO2--MED16	5	0	SBNO2	1112	chr19:1174171:-	MED16	41032	chr19:872118:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0503	0	SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila),MED16->chr19:867962-893218:-,mediator_complex_subunit_16	OVTOKO_OVARY	1	1	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	4	3	MT-ND4	1112	chrM:10871:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	10284	0	0	1	0.0403	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	1	0.0705	FALSE	230	193	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TY	4	3	MT-TA	1047	chrM:5609:-	MT-TY	4082	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0.0302	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVTOKO_OVARY	1	1	0.0705	FALSE	13	214	14	42	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TY	4	3	MT-TA	1054	chrM:5602:-	MT-TY	4071	chrM:5890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0.0302	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVTOKO_OVARY	1	1	0.0705	FALSE	13	214	14	42	0	FALSE	ACH-000663
OVTOKO_OVARY	NRIP1--AF127936.7	4	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	3	0.35	0.7	0.0403	0.0302	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OVTOKO_OVARY	0.35	0.7	0.0705	FALSE	164	806	69	479	0	FALSE	ACH-000663
OVTOKO_OVARY	NRIP1--AF127936.7	4	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	3	0.47	0.7	0.0403	0.0302	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OVTOKO_OVARY	0.47	0.7	0.0705	FALSE	125	705	46	456	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	5	MT-ND4	1572	chrM:11331:+	MT-ATP8	5534	chrM:8521:+	INCL_NON_REF_SPLICE	YES	23374	2112	0	0	0.0302	0.0503	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0	0.0805	FALSE	231	217	16	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	5	MT-ND4	1228	chrM:10987:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	16748	719	0	0.01	0.0302	0.0503	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.01	0.0805	FALSE	231	204	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	TRAK2--ALS2	4	1	TRAK2	6026	chr2:202272126:-	ALS2	29399	chr2:202633668:-	ONLY_REF_SPLICE	YES	26	9	0.16	0.36	0.0403	0.0101	TRAK2->chr2:202241930-202316302:-,trafficking_protein,_kinesin_binding_2,ALS2->ALS2,_alsin_Rho_guanine_nucleotide_exchange_factor,chr2:202565277-202645912:-	OVTOKO_OVARY	0.16	0.36	0.0504	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	KTN1--RP13-735L24.1	3	4	KTN1	24024	chr14:56115588:+	RP13-735L24.1	61567	chr12:9548315:+	ONLY_REF_SPLICE	YES	275	3	0.02	0.7	0.0302	0.0403	KTN1->Oncogene{Bushman},chr14:56025790-56168244:+,kinectin_1,RP13-735L24.1->chr12:9520060-9550213:+	OVTOKO_OVARY	0.02	0.7	0.0705	TRUE	0	0	0	1	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND3--MT-ATP8	4	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	1	1	0.0403	FALSE	351	233	23	137	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	4	0	MT-ND4	1003	chrM:10762:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	1	1	0.0403	FALSE	230	189	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	4	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	1	1	0.0403	FALSE	344	821	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4584	chrM:14684:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	1	1	0.0403	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	1	1	0.0403	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0403	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	OVTOKO_OVARY	1	1	0.0403	FALSE	369	2501	205	193	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ATP8	3	3	MT-ND4	1114	chrM:10873:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10896	6	0	0.5	0.0302	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	0	0.5	0.0604	FALSE	230	193	14	283	0	FALSE	ACH-000663
OVTOKO_OVARY	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0302	0.0302	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVTOKO_OVARY	0.86	1	0.0604	FALSE	407	2205	196	549	0	FALSE	ACH-000663
OVTOKO_OVARY	LAMC2--NPL	3	2	LAMC2	14817	chr1:183201992:+	NPL	47090	chr1:182798738:+	ONLY_REF_SPLICE	YES	204	51	0.02	0.09	0.0302	0.0201	LAMC2->chr1:183155373-183214035:+,laminin_subunit_gamma_2,NPL->N-acetylneuraminate_pyruvate_lyase_(dihydrodipicolinate_synthase),chr1:182758428-182799519:+	OVTOKO_OVARY	0.02	0.09	0.0503	TRUE	0	0	0	1	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	1	MT-ND4	1019	chrM:10778:+	MT-ND4L	5617	chrM:10708:+	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0302	0.0101	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.67	1	0.0403	FALSE	344	821	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND4--MT-ND4L	3	1	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	NO	7	0	0.36	1	0.0302	0.0101	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVTOKO_OVARY	0.36	1	0.0403	FALSE	344	821	44	306	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-TA--MT-TY	3	1	MT-TA	1021	chrM:5635:-	MT-TY	4077	chrM:5884:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.0101	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[171],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	OVTOKO_OVARY	1	1	0.0403	FALSE	13	214	14	42	0	FALSE	ACH-000663
OVTOKO_OVARY	DCDC2--GPLD1	3	0	DCDC2	8984	chr6:24205230:-	GPLD1	20870	chr6:24480187:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:-:[66513],DCDC2->chr6:24171984-24358280:-,doublecortin_domain_containing_2,GPLD1->chr6:24424793-24495433:-,glycosylphosphatidylinositol_specific_phospholipase_D1	OVTOKO_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	KDM4B--NKAIN1	3	0	KDM4B	1117	chr19:4969241:+	NKAIN1	40424	chr1:31656861:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0302	0	KDM4B->chr19:4969125-5153606:+,lysine_demethylase_4B,NKAIN1->Na+/K+_transporting_ATPase_interacting_1,chr1:31652592-31712401:-	OVTOKO_OVARY	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	MT-ND3--MT-ATP8	3	0	MT-ND3	1069	chrM:10127:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	1	1	0.0302	FALSE	351	233	23	137	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND3--MT-ATP8	3	0	MT-ND3	1053	chrM:10111:+	MT-ATP8	4482	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	1	1	0.0302	FALSE	351	233	23	137	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND3--MT-ATP8	3	0	MT-ND3	1094	chrM:10152:+	MT-ATP8	4474	chrM:8493:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	1	1	0.0302	FALSE	351	233	23	137	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND3--MT-ATP8	3	0	MT-ND3	1213	chrM:10271:+	MT-ATP8	4379	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	OVTOKO_OVARY	1	1	0.0302	FALSE	351	233	23	137	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	1	1	0.0302	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	MT-ND6--MT-TE	3	0	MT-ND6	1017	chrM:14657:-	MT-TE	4530	chrM:14738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVTOKO_OVARY	1	1	0.0302	FALSE	499	1288	110	792	0	FALSE	ACH-000663
OVTOKO_OVARY	RFC1--RP11-99J16__A.2	1	8	RFC1	17114	chr4:39313065:-	RP11-99J16__A.2	35564	chr1:230912736:-	ONLY_REF_SPLICE	NO	60	0	0.13	1	0.0101	0.0805	RFC1->chr4:39289076-39367995:-,replication_factor_C_subunit_1,RP11-99J16__A.2->chr1:230846444-230931238:-	OVTOKO_OVARY	0.13	1	0.0906	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	AC002066.1--AC073130.1	2	0	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	OVTOKO_OVARY	1	1	0.0201	FALSE	0	3	0	33	0	FALSE	ACH-000663
OVTOKO_OVARY	ATRX--PGK1	2	0	ATRX	2348	chrX:76972608:-	PGK1	52000	chrX:77365364:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},ATRX->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},alpha_thalassemia/mental_retardation_syndrome_X-linked,chrX:76760356-77041702:-,PGK1->chrX:77320685-77384793:+,phosphoglycerate_kinase_1	OVTOKO_OVARY	1	1	0.0201	TRUE	1	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	POLE--ANKLE2	2	0	POLE	1112	chr12:133263840:-	ANKLE2	47765	chr12:133331719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},LOCAL_REARRANGEMENT:-:[38303],POLE->ArcherDX_panel,FoundationOne_panel,chr12:133200348-133263951:-,polymerase_(DNA)_epsilon,_catalytic_subunit,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	OVTOKO_OVARY	1	1	0.0201	TRUE	0	0	0	11	0	TRUE	ACH-000663
OVTOKO_OVARY	RP11-445F12.1--RP11-405F3.4	2	0	RP11-445F12.1	1098	chr17:35293863:-	RP11-405F3.4	14130	chr16:57720732:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	RP11-445F12.1->chr17:35218935-35293960:-,RP11-405F3.4->chr16:57715036-57735642:-	OVTOKO_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	SPPL2B--PDPK1	2	0	SPPL2B	1161	chr19:2328774:+	PDPK1	25016	chr16:2607704:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	SPPL2B->Oncogene{Bushman},chr19:2328614-2355099:+,signal_peptide_peptidase_like_2B,PDPK1->3-phosphoinositide_dependent_protein_kinase_1,chr16:2587965-2653189:+	OVTOKO_OVARY	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	LAMC2--NPL	1	2	LAMC2	15897	chr1:183203581:+	NPL	47090	chr1:182798738:+	ONLY_REF_SPLICE	YES	178	51	0.02	0.06	0.0101	0.0201	LAMC2->chr1:183155373-183214035:+,laminin_subunit_gamma_2,NPL->N-acetylneuraminate_pyruvate_lyase_(dihydrodipicolinate_synthase),chr1:182758428-182799519:+	OVTOKO_OVARY	0.02	0.06	0.0302	TRUE	0	0	0	1	0	FALSE	ACH-000663
OVTOKO_OVARY	RP11-973F15.1--RP11-96B2.1	1	2	RP11-973F15.1	1734	chr8:123705612:-	RP11-96B2.1	7930	chr8:123499705:-	ONLY_REF_SPLICE	YES	17	0	0.15	1	0.0101	0.0201	RP11-973F15.1->chr8:123682624-123706345:-,RP11-96B2.1->chr8:123497754-123502054:-	OVTOKO_OVARY	0.15	1	0.0302	TRUE	0	8	0	3	8	TRUE	ACH-000663
OVTOKO_OVARY	CPQ--SDC2	1	1	CPQ	9826	chr8:97892233:+	SDC2	31136	chr8:97605708:+	ONLY_REF_SPLICE	YES	32	488	0.06	0	0.0101	0.0101	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Ovary=[count:1=pct:1.9],Liver=[count:1=pct:0.8],Thyroid=[count:1=pct:0.6]},GTEx_v2:{count=8;pct=0.09%;dist=Artery_-_Tibial=1,Artery_-_Aorta=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Spleen=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:+:[33455],CPQ->carboxypeptidase_Q,chr8:97657455-98161882:+,SDC2->chr8:97505579-97624000:+,syndecan_2	OVTOKO_OVARY	0	0.06	0.0202	FALSE	2	35	6	7	0	FALSE	ACH-000663
OVTOKO_OVARY	EDF1--RABL6	1	1	EDF1	3072	chr9:139757358:-	RABL6	9993	chr9:139717977:+	ONLY_REF_SPLICE	YES	352	26	0.01	0.07	0.0101	0.0101	GTEx_FI:{Skin=[count:3=pct:1.0],Adipose_Tissue=[count:2=pct:0.7],Lung=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=7;pct=0.08%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1},LOCAL_INVERSION:-:+:[20932],EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+	OVTOKO_OVARY	0.01	0.07	0.0202	FALSE	5	4	0	1	0	FALSE	ACH-000663
OVTOKO_OVARY	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	8	1	0.2	0.0101	0.0101	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OVTOKO_OVARY	0.2	1	0.0202	FALSE	25	145	6	90	0	FALSE	ACH-000663
OVTOKO_OVARY	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	13	8	0.13	0.2	0.0101	0.0101	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OVTOKO_OVARY	0.13	0.2	0.0202	FALSE	8	57	1	47	0	FALSE	ACH-000663
OVTOKO_OVARY	SYNRG--SLC22A20	1	1	SYNRG	14255	chr17:35928893:-	SLC22A20	51192	chr11:65009461:+	ONLY_REF_SPLICE	YES	7	7	0.22	0.22	0.0101	0.0101	SYNRG->chr17:35874900-35969544:-,synergin,_gamma,SLC22A20->chr11:64981311-65010228:+,solute_carrier_family_22_member_20	OVTOKO_OVARY	0.22	0.22	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	TRAK2--ALS2	1	1	TRAK2	7103	chr2:202265741:-	ALS2	29399	chr2:202633668:-	ONLY_REF_SPLICE	YES	35	9	0.05	0.18	0.0101	0.0101	TRAK2->chr2:202241930-202316302:-,trafficking_protein,_kinesin_binding_2,ALS2->ALS2,_alsin_Rho_guanine_nucleotide_exchange_factor,chr2:202565277-202645912:-	OVTOKO_OVARY	0.05	0.18	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000663
OVTOKO_OVARY	UBE2G1--C14orf142	1	1	UBE2G1	8157	chr17:4192525:-	C14orf142	17805	chr14:93670127:-	ONLY_REF_SPLICE	YES	119	25	0.02	0.07	0.0101	0.0101	UBE2G1->chr17:4172554-4269923:-,ubiquitin_conjugating_enzyme_E2_G1,C14orf142->chr14:93669239-93673439:-,chromosome_14_open_reading_frame_142	OVTOKO_OVARY	0.02	0.07	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000663
OVCAR8_OVARY	TIMM23B--LINC00843	78	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8584	0.1651	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OVCAR8_OVARY	0.99	1	1.0235	TRUE	508	994	45	981	0	FALSE	ACH-000696
OVCAR8_OVARY	WDR33--SAP130	65	36	WDR33	1176	chr2:128568586:-	SAP130	50001	chr2:128712918:-	ONLY_REF_SPLICE	YES	152	90	0.4	0.53	0.7153	0.3962	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	OVCAR8_OVARY	0.4	0.53	1.1115	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	CTD-2054N24.2--CTD-2054N24.1	66	16	CTD-2054N24.2	3394	chr15:100353291:+	CTD-2054N24.1	9372	chr15:100331758:+	INCL_NON_REF_SPLICE	YES	5	0	0.94	1	0.7264	0.1761	LOCAL_REARRANGEMENT:+:[14176],CTD-2054N24.2->chr15:100347228-100417353:+,CTD-2054N24.1->chr15:100331332-100333052:+	OVCAR8_OVARY	0.94	1	0.9025	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	FBXL7--TRIO	42	11	FBXL7	3619	chr5:15616181:+	TRIO	14917	chr5:14270934:+	ONLY_REF_SPLICE	YES	4	3	0.93	0.95	0.4622	0.1211	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},{Klijn_CCL:Ovary=1},FBXL7->F-box_and_leucine-rich_repeat_protein_7,Oncogene{Bushman},chr5:15500305-15939900:+,TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor	OVCAR8_OVARY	0.93	0.95	0.5833	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	TIMM23--RP11-464F9.1	39	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	469	0	0.08	1	0.4292	0.011	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OVCAR8_OVARY	0.08	1	0.4402	TRUE	519	3926	326	965	0	FALSE	ACH-000696
OVCAR8_OVARY	ZNF654--HMGB2	39	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4292	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OVCAR8_OVARY	1	1	0.4292	TRUE	0	0	0	518	0	FALSE	ACH-000696
OVCAR8_OVARY	RASA2--SPINK5	37	7	RASA2	1170	chr3:141206058:+	SPINK5	37558	chr5:147465968:+	ONLY_REF_SPLICE	YES	9	0	0.83	1	0.4072	0.077	RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,SPINK5->chr5:147405246-147516852:+,serine_peptidase_inhibitor,_Kazal_type_5	OVCAR8_OVARY	0.83	1	0.4842	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	PLXDC1--TAF13	36	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3962	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	OVCAR8_OVARY	1	1	0.3962	TRUE	7	10	0	216	0	FALSE	ACH-000696
OVCAR8_OVARY	WWC2--TENM3	31	20	WWC2	5601	chr4:184130178:+	TENM3	45049	chr4:183549804:+	ONLY_REF_SPLICE	YES	49	4	0.51	0.93	0.3412	0.2201	WWC2->WW_and_C2_domain_containing_2,chr4:184020446-184241930:+,TENM3->chr4:183065140-183724177:+,teneurin_transmembrane_protein_3	OVCAR8_OVARY	0.51	0.93	0.5613	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	RP11-680G10.1--GSE1	30	12	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	12	1	0.78	0.3302	0.1321	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	OVCAR8_OVARY	0.78	1	0.4623	TRUE	458	1351	185	561	0	FALSE	ACH-000696
OVCAR8_OVARY	FCHSD2--UVRAG	17	6	FCHSD2	10623	chr11:72695133:-	UVRAG	49941	chr11:75776754:+	ONLY_REF_SPLICE	YES	34	18	0.4	0.56	0.1871	0.066	FCHSD2->FCH_and_double_SH3_domains_2,chr11:72547790-72853306:-,UVRAG->UV_radiation_resistance_associated,chr11:75526212-75854239:+	OVCAR8_OVARY	0.4	0.56	0.2531	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	MT-ND6--MT-TE	17	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1871	0.044	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVCAR8_OVARY	1	1	0.2311	FALSE	499	1288	110	792	0	FALSE	ACH-000696
OVCAR8_OVARY	FOXN3--RP11-944C7.1	15	8	FOXN3	1122	chr14:90085372:-	RP11-944C7.1	38664	chr14:90095480:-	ONLY_REF_SPLICE	YES	3	1	0.88	0.96	0.1651	0.088	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_REARRANGEMENT:-:[9772],FOXN3->chr14:89591215-90085493:-,forkhead_box_N3,RP11-944C7.1->chr14:90095265-90109015:-	OVCAR8_OVARY	0.88	0.96	0.2531	TRUE	0	2	0	1	2	TRUE	ACH-000696
OVCAR8_OVARY	MT-TA--MT-TC	16	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1761	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVCAR8_OVARY	1	1	0.1761	FALSE	462	80	0	856	0	FALSE	ACH-000696
OVCAR8_OVARY	RP11-680G10.1--GSE1	14	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	25	1	0.47	0.1541	0.088	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	OVCAR8_OVARY	0.47	1	0.2421	TRUE	465	1949	224	605	0	FALSE	ACH-000696
OVCAR8_OVARY	RP11-123O10.4--GRIP1	13	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1431	0.022	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	OVCAR8_OVARY	1	1	0.1651	FALSE	416	2512	207	587	0	FALSE	ACH-000696
OVCAR8_OVARY	NRIP1--AF127936.7	13	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1431	0.011	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OVCAR8_OVARY	0.88	1	0.1541	FALSE	292	1546	117	613	0	FALSE	ACH-000696
OVCAR8_OVARY	RCC1--CTD-2354A18.1	11	0	RCC1	2175	chr1:28834672:+	CTD-2354A18.1	21770	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1211	0	RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,CTD-2354A18.1->chr18:70992176-71017113:+	OVCAR8_OVARY	1	1	0.1211	TRUE	0	1	0	7	0	TRUE	ACH-000696
OVCAR8_OVARY	JSRP1--RPS28	10	3	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1101	0.033	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OVCAR8_OVARY	1	1	0.1431	TRUE	0	1	0	84	1	FALSE	ACH-000696
OVCAR8_OVARY	CTD-2054N24.2--CTD-2054N24.1	8	10	CTD-2054N24.2	2280	chr15:100348507:+	CTD-2054N24.1	9372	chr15:100331758:+	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.088	0.1101	LOCAL_REARRANGEMENT:+:[14176],CTD-2054N24.2->chr15:100347228-100417353:+,CTD-2054N24.1->chr15:100331332-100333052:+	OVCAR8_OVARY	0.86	1	0.1981	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1101	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OVCAR8_OVARY	1	1	0.1101	TRUE	0	0	0	434	0	FALSE	ACH-000696
OVCAR8_OVARY	WDR33--SAP130	1	36	WDR33	1439	chr2:128568323:-	SAP130	50001	chr2:128712918:-	ONLY_REF_SPLICE	NO	160	90	0.19	0.29	0.011	0.3962	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	OVCAR8_OVARY	0.19	0.29	0.4072	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	FOXN3--RP11-944C7.1	7	11	FOXN3	1122	chr14:90085372:-	RP11-944C7.1	37467	chr14:90097907:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.077	0.1211	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_REARRANGEMENT:-:[9772],FOXN3->chr14:89591215-90085493:-,forkhead_box_N3,RP11-944C7.1->chr14:90095265-90109015:-	OVCAR8_OVARY	0.86	1	0.1981	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	MT-ND6--MT-TE	8	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.088	0.044	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVCAR8_OVARY	1	1	0.132	FALSE	499	1288	110	792	0	FALSE	ACH-000696
OVCAR8_OVARY	TANC2--KANK2	9	0	TANC2	18467	chr17:61396451:+	KANK2	58372	chr19:11287493:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.099	0	HGNC_GENEFAM,TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,KANK2->KN_motif_and_ankyrin_repeat_domains_2,chr19:11274943-11308467:-	OVCAR8_OVARY	1	1	0.099	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	JSRP1--RPS28	7	3	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.077	0.033	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	OVCAR8_OVARY	1	1	0.11	TRUE	0	1	0	84	1	FALSE	ACH-000696
OVCAR8_OVARY	EHD4--UHRF1	7	2	EHD4	6471	chr15:42211408:-	UHRF1	17079	chr19:4910888:+	ONLY_REF_SPLICE	YES	90	301	0.09	0.03	0.077	0.022	EHD4->EH_domain_containing_4,chr15:42190950-42264776:-,UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1	OVCAR8_OVARY	0.03	0.09	0.099	TRUE	0	0	0	1	0	FALSE	ACH-000696
OVCAR8_OVARY	PLCB4--PLCB1	7	1	PLCB4	1444	chr20:9049853:+	PLCB1	51105	chr20:8608941:+	ONLY_REF_SPLICE	YES	98	1	0.08	0.89	0.077	0.011	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	OVCAR8_OVARY	0.08	0.89	0.088	TRUE	0	1	0	1	1	TRUE	ACH-000696
OVCAR8_OVARY	FAF1--EPS15	6	1	FAF1	1497	chr1:51425439:-	EPS15	31343	chr1:51946986:-	ONLY_REF_SPLICE	YES	42	15	0.14	0.32	0.066	0.011	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},{Klijn_CCL:Ovary=1},FAF1->Fas_associated_factor_1,chr1:50905150-51425935:-,EPS15->Oncogene{Bushman},chr1:51819935-51985000:-,epidermal_growth_factor_receptor_pathway_substrate_15	OVCAR8_OVARY	0.14	0.32	0.077	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	POLE4--RP11-355F16.1	6	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	313	0	0.02	1	0.066	0.011	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	OVCAR8_OVARY	0.02	1	0.077	TRUE	5	7	0	37	0	FALSE	ACH-000696
OVCAR8_OVARY	RP11-634B7.4--TRIM58	4	8	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	157	1	0.07	0.044	0.088	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	OVCAR8_OVARY	0.07	1	0.132	TRUE	158	633	76	73	0	FALSE	ACH-000696
OVCAR8_OVARY	NRIP1--AF127936.7	5	3	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	15	0	0.35	1	0.055	0.033	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OVCAR8_OVARY	0.35	1	0.088	FALSE	164	806	69	479	0	FALSE	ACH-000696
OVCAR8_OVARY	MT-ND6--MT-TE	4	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.044	0.044	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVCAR8_OVARY	1	1	0.088	FALSE	499	1288	110	792	0	FALSE	ACH-000696
OVCAR8_OVARY	MT-ND6--MT-TE	5	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVCAR8_OVARY	1	1	0.055	FALSE	499	1288	110	792	0	FALSE	ACH-000696
OVCAR8_OVARY	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OVCAR8_OVARY	1	1	0.055	TRUE	0	0	0	434	0	FALSE	ACH-000696
OVCAR8_OVARY	SUMF1--BHLHE40-AS1	5	0	SUMF1	7757	chr3:4452549:-	BHLHE40-AS1	33957	chr3:4942382:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.055	0	SUMF1->chr3:3742498-4508965:-,sulfatase_modifying_factor_1,BHLHE40-AS1->BHLHE40_antisense_RNA_1,chr3:4938493-5021646:-	OVCAR8_OVARY	1	1	0.055	TRUE	0	1	0	1	1	TRUE	ACH-000696
OVCAR8_OVARY	CTD-2337A12.1--CAST	4	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	52	1	0.1	0.044	0.022	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	OVCAR8_OVARY	0.1	1	0.066	TRUE	347	1186	183	220	0	FALSE	ACH-000696
OVCAR8_OVARY	XKR9--RP11-326E22.1	4	1	XKR9	8344	chr8:71619388:+	RP11-326E22.1	21087	chr8:72111375:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.044	0.011	GTEx_FI:{Brain=[count:4=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Liver=[count:1=pct:0.8]},XKR9->XK_related_9,chr8:71581600-71702606:+,RP11-326E22.1->chr8:72067692-72116458:+	OVCAR8_OVARY	0.83	1	0.055	TRUE	5	29	0	13	0	FALSE	ACH-000696
OVCAR8_OVARY	PLCB4--PLCB1	4	0	PLCB4	1141	chr20:9049550:+	PLCB1	51105	chr20:8608941:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.044	0	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	OVCAR8_OVARY	1	1	0.044	TRUE	0	1	0	1	1	TRUE	ACH-000696
OVCAR8_OVARY	FOXN3--RP11-944C7.1	1	11	FOXN3	1122	chr14:90085372:-	RP11-944C7.1	36209	chr14:90099798:-	ONLY_REF_SPLICE	NO	3	0	0.8	1	0.011	0.1211	GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_REARRANGEMENT:-:[9772],FOXN3->chr14:89591215-90085493:-,forkhead_box_N3,RP11-944C7.1->chr14:90095265-90109015:-	OVCAR8_OVARY	0.8	1	0.1321	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	10074	chr16:85687884:+	ONLY_REF_SPLICE	YES	0	36	1	0.1	0.033	0.011	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	OVCAR8_OVARY	0.1	1	0.044	TRUE	64	13	3	59	0	FALSE	ACH-000696
OVCAR8_OVARY	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0.011	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVCAR8_OVARY	1	1	0.044	FALSE	515	4851	409	746	0	FALSE	ACH-000696
OVCAR8_OVARY	SNHG5--ITGB3BP	3	1	SNHG5	1780	chr6:86387672:-	ITGB3BP	20532	chr1:63920639:-	ONLY_REF_SPLICE	YES	2019	142	0	0.03	0.033	0.011	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	OVCAR8_OVARY	0	0.03	0.044	FALSE	0	0	0	3	0	FALSE	ACH-000696
OVCAR8_OVARY	VCL--ADK	3	1	VCL	20814	chr10:75868914:+	ADK	36629	chr10:76153899:+	ONLY_REF_SPLICE	YES	483	538	0.01	0.01	0.033	0.011	GTEx&tcga_normals:1/3694=0.03%,{Klijn_CCL:Lung=1,Head-Neck=1},NEIGHBORS[31042],VCL->Oncogene{Bushman},chr10:75757872-75879918:+,vinculin,ADK->adenosine_kinase,chr10:75910960-76469061:+	OVCAR8_OVARY	0.01	0.01	0.044	FALSE	0	0	0	1	0	FALSE	ACH-000696
OVCAR8_OVARY	NCOR2--UBC	3	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	OVCAR8_OVARY	1	1	0.033	TRUE	145	312	16	51	0	FALSE	ACH-000696
OVCAR8_OVARY	NDUFA4--PHF14	3	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	OVCAR8_OVARY	1	1	0.033	TRUE	19	32	3	60	0	FALSE	ACH-000696
OVCAR8_OVARY	NPM1P24--SET	3	0	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	OVCAR8_OVARY	1	1	0.033	TRUE	0	0	0	434	0	FALSE	ACH-000696
OVCAR8_OVARY	TRAPPC9--PTK2	2	4	TRAPPC9	9369	chr8:141407719:-	PTK2	126785	chr8:141669777:-	ONLY_REF_SPLICE	YES	45	416	0.12	0.01	0.022	0.044	TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	OVCAR8_OVARY	0.01	0.12	0.066	FALSE	0	0	0	1	0	FALSE	ACH-000696
OVCAR8_OVARY	NRIP1--AF127936.7	2	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.31	1	0.022	0.033	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	OVCAR8_OVARY	0.31	1	0.055	FALSE	125	705	46	456	0	FALSE	ACH-000696
OVCAR8_OVARY	CALD1--LRGUK	2	1	CALD1	6757	chr7:134528722:+	LRGUK	45146	chr7:133859308:+	ONLY_REF_SPLICE	YES	248	7	0.01	0.3	0.022	0.011	CALD1->caldesmon_1,chr7:134429003-134655479:+,LRGUK->Oncogene{Bushman},chr7:133812052-133949343:+,leucine-rich_repeats_and_guanylate_kinase_domain_containing	OVCAR8_OVARY	0.01	0.3	0.033	FALSE	0	0	0	1	0	FALSE	ACH-000696
OVCAR8_OVARY	CLTC--RP11-178C3.1	2	1	CLTC	25703	chr17:57761346:+	RP11-178C3.1	41142	chr17:58050196:+	ONLY_REF_SPLICE	YES	473	0	0.01	1	0.022	0.011	CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RP11-178C3.1->chr17:58018269-58050462:+	OVCAR8_OVARY	0.01	1	0.033	FALSE	0	0	0	1	0	FALSE	ACH-000696
OVCAR8_OVARY	FBXL7--TRIO	1	5	FBXL7	3619	chr5:15616181:+	TRIO	15992	chr5:14280431:+	ONLY_REF_SPLICE	NO	4	40	0.6	0.13	0.011	0.055	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},{Klijn_CCL:Ovary=1},FBXL7->F-box_and_leucine-rich_repeat_protein_7,Oncogene{Bushman},chr5:15500305-15939900:+,TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor	OVCAR8_OVARY	0.13	0.6	0.066	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	TIMM23B--LINC00843	2	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0.011	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OVCAR8_OVARY	1	1	0.033	TRUE	62	24	1	171	0	FALSE	ACH-000696
OVCAR8_OVARY	TRAPPC9--KCNK9	2	1	TRAPPC9	55504	chr8:140898123:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	YES	38	0	0.07	1	0.022	0.011	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	OVCAR8_OVARY	0.07	1	0.033	FALSE	7	13	2	16	0	FALSE	ACH-000696
OVCAR8_OVARY	DANCR--CTD-2354A18.1	2	0	DANCR	1530	chr4:53579126:+	CTD-2354A18.1	10186	chr18:70999698:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,CTD-2354A18.1->chr18:70992176-71017113:+	OVCAR8_OVARY	1	1	0.022	TRUE	0	0	0	5	0	TRUE	ACH-000696
OVCAR8_OVARY	ERC2--ARHGEF3	2	0	ERC2	3976	chr3:56468379:-	ARHGEF3	54176	chr3:56789179:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	ERC2->ELKS/RAB6-interacting/CAST_family_member_2,Oncogene{Bushman},chr3:55542336-56502391:-,ARHGEF3->Rho_guanine_nucleotide_exchange_factor_3,chr3:56761446-57113357:-	OVCAR8_OVARY	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	MAEA--CTBP1	2	0	MAEA	1132	chr4:1283770:+	CTBP1	26550	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Esophagus=[count:1=pct:0.2],Brain=[count:1=pct:0.2],Pituitary=[count:1=pct:1.9],Skin=[count:1=pct:0.3]},GTEx_v2:{count=6;pct=0.07%;dist=Cervix_-_Endocervix=1,Thyroid=1,Brain_-_Caudate_(basal_ganglia)=1,Esophagus_-_Mucosa=1,Whole_Blood=1,Spleen=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[39898],MAEA->chr4:1283639-1333935:+,macrophage_erythroblast_attacher,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	OVCAR8_OVARY	1	1	0.022	TRUE	3	14	2	43	0	FALSE	ACH-000696
OVCAR8_OVARY	SMURF2--PHB	2	0	SMURF2	1240	chr17:62657947:-	PHB	31620	chr17:47490653:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	SMURF2->SMAD_specific_E3_ubiquitin_protein_ligase_2,chr17:62538413-62658186:-,PHB->Oncogene{Bushman},chr17:47481414-47492246:-,prohibitin	OVCAR8_OVARY	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000696
OVCAR8_OVARY	SNX8--MAD1L1	2	0	SNX8	1097	chr7:2393857:-	MAD1L1	48468	chr7:2108973:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	NEIGHBORS[18527],SNX8->chr7:2291405-2393953:-,sorting_nexin_8,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	OVCAR8_OVARY	1	1	0.022	FALSE	0	1	0	1	0	FALSE	ACH-000696
OVCAR8_OVARY	TEAD1--PARVA	2	0	TEAD1	4496	chr11:12785981:+	PARVA	32787	chr11:12495292:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	OVCAR8_OVARY	1	1	0.022	TRUE	3	5	0	10	0	FALSE	ACH-000696
OVCAR8_OVARY	HIF1A--CTD-2277K2.1	1	2	HIF1A	1327	chr14:62162557:+	CTD-2277K2.1	26514	chr14:62436850:+	ONLY_REF_SPLICE	YES	319	0	0.01	1	0.011	0.022	NEIGHBORS[63716],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,CTD-2277K2.1->chr14:62278692-62437037:+	OVCAR8_OVARY	0.01	1	0.033	FALSE	0	0	0	4	0	FALSE	ACH-000696
OVCAR8_OVARY	HIF1A--CTD-2277K2.1	1	2	HIF1A	1327	chr14:62162557:+	CTD-2277K2.1	25411	chr14:62363971:+	ONLY_REF_SPLICE	NO	319	0	0.01	1	0.011	0.022	NEIGHBORS[63716],HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit,CTD-2277K2.1->chr14:62278692-62437037:+	OVCAR8_OVARY	0.01	1	0.033	FALSE	0	0	0	1	0	FALSE	ACH-000696
OVCAR8_OVARY	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.011	0.022	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVCAR8_OVARY	1	1	0.033	FALSE	192	492	57	212	0	FALSE	ACH-000696
OVCAR8_OVARY	SNHG5--CTD-2354A18.1	1	2	SNHG5	1780	chr6:86387672:-	CTD-2354A18.1	12099	chr18:70999698:+	ONLY_REF_SPLICE	NO	2019	150	0	0.02	0.011	0.022	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,CTD-2354A18.1->chr18:70992176-71017113:+	OVCAR8_OVARY	0	0.02	0.033	FALSE	0	0	0	1	0	FALSE	ACH-000696
OVCAR8_OVARY	EHD4--UHRF1	1	1	EHD4	6471	chr15:42211408:-	UHRF1	18242	chr19:4929234:+	ONLY_REF_SPLICE	YES	90	281	0.02	0.01	0.011	0.011	EHD4->EH_domain_containing_4,chr15:42190950-42264776:-,UHRF1->chr19:4903092-4962165:+,ubiquitin_like_with_PHD_and_ring_finger_domains_1	OVCAR8_OVARY	0.01	0.02	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000696
OVCAR8_OVARY	GNAQ--CDCA7L	1	1	GNAQ	3129	chr9:80537077:-	CDCA7L	21699	chr7:21956512:-	ONLY_REF_SPLICE	YES	99	82	0.02	0.02	0.011	0.011	GNAQ->ArcherDX_panel,FoundationOne_panel,G_protein_subunit_alpha_q,Oncogene{Bushman},OncomapV4_panel,chr9:80331003-80646374:-,CDCA7L->cell_division_cycle_associated_7_like,chr7:21940518-21985702:-	OVCAR8_OVARY	0.02	0.02	0.022	TRUE	0	0	0	1	0	FALSE	ACH-000696
OVCAR8_OVARY	MINOS1--CAPZB	1	1	MINOS1	1127	chr1:19923603:+	CAPZB	21279	chr1:19746244:-	ONLY_REF_SPLICE	YES	94	52	0.02	0.04	0.011	0.011	GTEx_FI:{Nerve=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},MINOS1->chr1:19923477-19956314:+,mitochondrial_inner_membrane_organizing_system_1,CAPZB->capping_actin_protein_of_muscle_Z-line_beta_subunit,chr1:19665267-19812066:-	OVCAR8_OVARY	0.02	0.04	0.022	TRUE	2	7	0	21	0	FALSE	ACH-000696
OVCAR8_OVARY	PLCB4--PLCB1	1	1	PLCB4	2500	chr20:9076989:+	PLCB1	52243	chr20:8626749:+	ONLY_REF_SPLICE	YES	128	4	0.02	0.33	0.011	0.011	DGD_PARALOGS,GTEx_v2:{count=1;pct=0.01%;dist=Heart_-_Atrial_Appendage=1},NUCLCLUST,PROTCLUST,{Klijn_CCL:Lung=1},PLCB4->chr20:9049410-9461889:+,phospholipase_C_beta_4,PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1	OVCAR8_OVARY	0.02	0.33	0.022	TRUE	0	0	0	1	0	FALSE	ACH-000696
OVCAR8_OVARY	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.011	0.011	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVCAR8_OVARY	1	1	0.022	FALSE	407	2205	196	549	0	FALSE	ACH-000696
OVCAR8_OVARY	RPL31--GNAS	1	1	RPL31	5008	chr2:101622533:+	GNAS	29319	chr20:57470667:+	ONLY_REF_SPLICE	NO	333	872	0.01	0	0.011	0.011	RPL31->chr2:101618177-101640494:+,ribosomal_protein_L31,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	OVCAR8_OVARY	0	0.01	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000696
OVCAR8_OVARY	WDR33--SAP130	1	1	WDR33	1176	chr2:128568586:-	SAP130	51360	chr2:128707982:-	ONLY_REF_SPLICE	YES	152	117	0.01	0.02	0.011	0.011	WDR33->WD_repeat_domain_33,chr2:128458596-128568761:-,SAP130->Sin3A_associated_protein_130kDa,chr2:128698791-128785694:-	OVCAR8_OVARY	0.01	0.02	0.022	FALSE	0	0	0	2	0	FALSE	ACH-000696
OVCAR8_OVARY	ZNF519--RP11-1035H13.3	1	1	ZNF519	2343	chr18:14124349:-	RP11-1035H13.3	24375	chr16:18809366:-	ONLY_REF_SPLICE	YES	60	1001	0.03	0	0.011	0.011	ZNF519->chr18:14057456-14132489:-,zinc_finger_protein_519,RP11-1035H13.3->chr16:18799385-18812841:-	OVCAR8_OVARY	0	0.03	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000696
OVK18_OVARY	TIMM23B--LINC00843	196	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	1	1.6911	0.2157	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	OVK18_OVARY	1	1	1.9068	TRUE	508	994	45	981	0	FALSE	ACH-000947
OVK18_OVARY	CECR7--AC008132.1	129	4	CECR7	1775	chr22:17518234:+	AC008132.1	13601	chr22:18723545:+	ONLY_REF_SPLICE	YES	7	0	0.95	1	1.113	0.0345	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	OVK18_OVARY	0.95	1	1.1475	TRUE	0	0	0	5	0	TRUE	ACH-000947
OVK18_OVARY	TIMM23--RP11-464F9.1	116	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	155	1	0.43	0.99	1.0009	0.0173	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OVK18_OVARY	0.43	0.99	1.0182	TRUE	519	3926	326	965	0	FALSE	ACH-000947
OVK18_OVARY	RP11-444D3.1--SOX5	94	8	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	13	1	0.89	0.811	0.069	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	OVK18_OVARY	0.89	1	0.88	TRUE	477	1352	189	275	0	FALSE	ACH-000947
OVK18_OVARY	MT-TA--MT-TC	43	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.371	0.0345	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVK18_OVARY	1	1	0.4055	FALSE	462	80	0	856	0	FALSE	ACH-000947
OVK18_OVARY	AP000525.9--LA16c-60G3.6	41	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	22	0	0.66	1	0.3538	0.0086	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	OVK18_OVARY	0.66	1	0.3624	TRUE	0	42	0	133	42	FALSE	ACH-000947
OVK18_OVARY	AL589743.1--RP11-536C10.17	40	1	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	23	0	0.64	1	0.3451	0.0086	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	OVK18_OVARY	0.64	1	0.3537	TRUE	0	33	0	45	33	FALSE	ACH-000947
OVK18_OVARY	CTD-2314B22.3--RP11-536C10.19	38	0	CTD-2314B22.3	1109	chr14:19925240:-	RP11-536C10.19	26277	chr14:20168808:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3279	0	CTD-2314B22.3->chr14:19854098-19925348:-,RP11-536C10.19->chr14:20168638-20168809:-	OVK18_OVARY	1	1	0.3279	TRUE	0	2	0	9	2	TRUE	ACH-000947
OVK18_OVARY	MT-ND6--MT-TE	28	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.2416	0.0173	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVK18_OVARY	0.94	1	0.2589	FALSE	499	1288	110	792	0	FALSE	ACH-000947
OVK18_OVARY	CECR7--AC008132.1	27	3	CECR7	1775	chr22:17518234:+	AC008132.1	15153	chr22:18727043:+	ONLY_REF_SPLICE	YES	7	0	0.81	1	0.233	0.0259	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	OVK18_OVARY	0.81	1	0.2589	TRUE	0	0	0	5	0	TRUE	ACH-000947
OVK18_OVARY	C15orf57--CBX3	20	16	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	64	33	0.36	0.52	0.1726	0.138	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OVK18_OVARY	0.36	0.52	0.3106	TRUE	267	562	48	632	0	FALSE	ACH-000947
OVK18_OVARY	RP11-96H19.1--RP11-446N19.1	19	12	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	7	0	0.82	1	0.1639	0.1035	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVK18_OVARY	0.82	1	0.2674	FALSE	407	2205	196	549	0	FALSE	ACH-000947
OVK18_OVARY	ZNF654--HMGB2	19	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1639	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	OVK18_OVARY	1	1	0.1639	TRUE	0	0	0	518	0	FALSE	ACH-000947
OVK18_OVARY	CECR7--AC008132.1	18	1	CECR7	1775	chr22:17518234:+	AC008132.1	16240	chr22:18732023:+	ONLY_REF_SPLICE	YES	7	11	0.73	0.63	0.1553	0.0086	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	OVK18_OVARY	0.63	0.73	0.1639	TRUE	0	0	0	5	0	TRUE	ACH-000947
OVK18_OVARY	HSP90AB1--MT-RNR2	18	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3373	0	0.01	1	0.1553	0.0086	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OVK18_OVARY	0.01	1	0.1639	FALSE	13	9	0	364	0	FALSE	ACH-000947
OVK18_OVARY	MT-ND6--MT-TE	15	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.1294	0.0173	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVK18_OVARY	0.89	1	0.1467	FALSE	499	1288	110	792	0	FALSE	ACH-000947
OVK18_OVARY	HSP90AB1--MT-RNR2	14	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3394	0	0	1	0.1208	0.0086	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	OVK18_OVARY	0	1	0.1294	FALSE	13	9	0	364	0	FALSE	ACH-000947
OVK18_OVARY	RP11-96H19.1--RP11-446N19.1	10	17	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0863	0.1467	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVK18_OVARY	1	1	0.233	FALSE	192	492	57	212	0	FALSE	ACH-000947
OVK18_OVARY	AP003900.6--AP000345.1	14	0	AP003900.6	3299	chr21:11174002:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1208	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	OVK18_OVARY	1	1	0.1208	TRUE	0	8	0	37	1	FALSE	ACH-000947
OVK18_OVARY	MT-CO3--MT-ATP6	4	38	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	3	46	0.93	0.48	0.0345	0.3279	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OVK18_OVARY	0.48	0.93	0.3624	FALSE	189	492	56	216	0	FALSE	ACH-000947
OVK18_OVARY	MT-CO3--MT-ATP6	3	39	MT-CO3	1322	chrM:9528:+	MT-ATP6	5065	chrM:8807:+	INCL_NON_REF_SPLICE	NO	3	89	0.93	0.32	0.0259	0.3365	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OVK18_OVARY	0.32	0.93	0.3624	FALSE	189	492	56	216	0	FALSE	ACH-000947
OVK18_OVARY	MT-CO3--MT-ATP6	3	39	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	4	42	0.91	0.5	0.0259	0.3365	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OVK18_OVARY	0.5	0.91	0.3624	FALSE	189	492	56	216	0	FALSE	ACH-000947
OVK18_OVARY	MT-CO3--MT-ATP6	3	38	MT-CO3	1107	chrM:9313:+	MT-ATP6	5340	chrM:9082:+	INCL_NON_REF_SPLICE	YES	2	2	0.95	0.95	0.0259	0.3279	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OVK18_OVARY	0.95	0.95	0.3538	FALSE	189	492	56	216	0	FALSE	ACH-000947
OVK18_OVARY	AC027612.3--AP000345.1	12	1	AC027612.3	3584	chr2:91894141:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.1035	0.0086	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	OVK18_OVARY	0.93	1	0.1121	TRUE	0	0	0	11	0	TRUE	ACH-000947
OVK18_OVARY	MT-TA--MT-TC	11	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0949	0.0431	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVK18_OVARY	1	1	0.138	FALSE	462	80	0	856	0	FALSE	ACH-000947
OVK18_OVARY	MT-ND4--MT-ND4L	10	4	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	6275	0	0	1	0.0863	0.0345	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVK18_OVARY	0	1	0.1208	FALSE	328	800	43	304	0	FALSE	ACH-000947
OVK18_OVARY	C15orf57--CBX3	7	12	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	51	33	0.27	0.37	0.0604	0.1035	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	OVK18_OVARY	0.27	0.37	0.1639	TRUE	267	562	48	632	0	FALSE	ACH-000947
OVK18_OVARY	HLA-E--PMP22	10	0	HLA-E	2728	chr6:30458971:+	PMP22	10048	chr17:15165771:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0863	0	HLA-E->chr6:30457244-30461982:+,major_histocompatibility_complex,_class_I,_E,PMP22->chr17:15133095-15168643:-,peripheral_myelin_protein_22	OVK18_OVARY	1	1	0.0863	FALSE	0	0	0	1	0	FALSE	ACH-000947
OVK18_OVARY	RP11-96H19.1--RP11-446N19.1	8	7	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	7	1	0.68	0.069	0.0604	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVK18_OVARY	0.68	1	0.1294	FALSE	467	2173	244	435	0	FALSE	ACH-000947
OVK18_OVARY	MT-CO3--MT-ATP6	9	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	3	0	0.79	1	0.0777	0.0173	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OVK18_OVARY	0.79	1	0.095	FALSE	189	492	56	216	0	FALSE	ACH-000947
OVK18_OVARY	MT-ND4--MT-ND4L	3	24	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	2	1	0.93	0.96	0.0259	0.2071	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVK18_OVARY	0.93	0.96	0.233	FALSE	344	821	44	306	0	FALSE	ACH-000947
OVK18_OVARY	MT-ND4--MT-ND4L	3	21	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0259	0.1812	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVK18_OVARY	0.96	1	0.2071	FALSE	344	821	44	306	0	FALSE	ACH-000947
OVK18_OVARY	MT-TA--MT-TC	6	8	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	0.069	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVK18_OVARY	1	1	0.1208	FALSE	462	80	0	856	0	FALSE	ACH-000947
OVK18_OVARY	RP11-96H19.1--RP11-446N19.1	7	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	7	7	0.61	0.61	0.0604	0.0345	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	OVK18_OVARY	0.61	0.61	0.0949	FALSE	515	4851	409	746	0	FALSE	ACH-000947
OVK18_OVARY	MT-ND6--MT-TE	7	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	2	0	0.82	1	0.0604	0.0173	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVK18_OVARY	0.82	1	0.0777	FALSE	499	1288	110	792	0	FALSE	ACH-000947
OVK18_OVARY	AP003900.6--AP000345.1	7	0	AP003900.6	1122	chr21:11169841:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0604	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	OVK18_OVARY	1	1	0.0604	TRUE	4	17	0	31	0	FALSE	ACH-000947
OVK18_OVARY	MT-ND4--MT-ND4L	7	0	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVK18_OVARY	1	1	0.0604	FALSE	344	827	44	306	0	FALSE	ACH-000947
OVK18_OVARY	RP11-444D3.1--SOX5	5	8	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	15	1	0.46	0.0431	0.069	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	OVK18_OVARY	0.46	1	0.1121	TRUE	160	277	29	98	0	FALSE	ACH-000947
OVK18_OVARY	TMSB10--TMSB4X	7	0	TMSB10	1493	chr2:85133241:+	TMSB4X	6717	chrX:12994896:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0604	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	OVK18_OVARY	1	1	0.0604	TRUE	0	1	0	17	1	TRUE	ACH-000947
OVK18_OVARY	MT-TA--MT-TC	6	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	0.0086	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	OVK18_OVARY	1	1	0.0604	FALSE	462	80	0	856	0	FALSE	ACH-000947
OVK18_OVARY	PVT1--MYC	5	5	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	70	155	0.12	0.06	0.0431	0.0431	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	OVK18_OVARY	0.06	0.12	0.0862	TRUE	3	14	0	24	0	FALSE	ACH-000947
OVK18_OVARY	CTD-2251F13.1--PRKD1	6	0	CTD-2251F13.1	1110	chr14:30766140:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0518	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	OVK18_OVARY	1	1	0.0518	TRUE	0	3	0	9	3	TRUE	ACH-000947
OVK18_OVARY	MT-CO3--MT-ATP6	3	12	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0259	0.1035	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OVK18_OVARY	0.94	1	0.1294	FALSE	189	492	56	216	0	FALSE	ACH-000947
OVK18_OVARY	MT-CO3--MT-ATP6	6	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0518	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OVK18_OVARY	1	1	0.0518	FALSE	189	492	56	216	0	FALSE	ACH-000947
OVK18_OVARY	MT-CO3--MT-ATP6	3	11	MT-CO3	1092	chrM:9298:+	MT-ATP6	5414	chrM:9156:+	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0259	0.0949	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OVK18_OVARY	0.93	1	0.1208	FALSE	189	492	56	216	0	FALSE	ACH-000947
OVK18_OVARY	MT-ND4--MT-ND4L	5	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.88	0.0431	0.0173	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVK18_OVARY	0.88	1	0.0604	FALSE	344	821	44	306	0	FALSE	ACH-000947
OVK18_OVARY	CTD-2251F13.1--PRKD1	5	1	CTD-2251F13.1	3439	chr14:30673138:-	PRKD1	13375	chr14:30516993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0431	0.0086	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	OVK18_OVARY	1	1	0.0517	TRUE	0	3	0	8	3	TRUE	ACH-000947
OVK18_OVARY	MT-ND6--MT-TE	5	1	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.86	1	0.0431	0.0086	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVK18_OVARY	0.86	1	0.0517	FALSE	499	1288	110	792	0	FALSE	ACH-000947
OVK18_OVARY	PVT1--MYC	4	5	PVT1	1202	chr8:128806980:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	70	149	0.11	0.06	0.0345	0.0431	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	OVK18_OVARY	0.06	0.11	0.0776	TRUE	3	14	0	24	0	FALSE	ACH-000947
OVK18_OVARY	RP11-680G10.1--GSE1	5	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	81	1	0.07	0.0431	0.0086	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	OVK18_OVARY	0.07	1	0.0517	TRUE	465	1949	224	605	0	FALSE	ACH-000947
OVK18_OVARY	AP003900.6--AP000345.1	5	0	AP003900.6	2187	chr21:11172043:+	AP000345.1	9030	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0431	0	GTEx_FI:{Testis=[count:4=pct:3.8]},AP003900.6->chr21:11169720-11184046:+,AP000345.1->chr22:23804273-23829167:-	OVK18_OVARY	1	1	0.0431	TRUE	1	2	0	16	0	FALSE	ACH-000947
OVK18_OVARY	G6PC3--MT-CO3	5	0	G6PC3	5661	chr17:42152763:+	MT-CO3	9964	chrM:9563:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	G6PC3->chr17:42148103-42153709:+,glucose_6_phosphatase_catalytic_subunit_3,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	OVK18_OVARY	1	1	0.0431	FALSE	0	0	0	1	0	FALSE	ACH-000947
OVK18_OVARY	MT-ATP6--MT-CO1	5	0	MT-ATP6	1380	chrM:8906:+	MT-CO1	5953	chrM:7175:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	OVK18_OVARY	1	1	0.0431	FALSE	183	104	9	328	0	FALSE	ACH-000947
OVK18_OVARY	MT-ND6--MT-TE	5	0	MT-ND6	1037	chrM:14637:-	MT-TE	4593	chrM:14675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0431	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVK18_OVARY	1	1	0.0431	FALSE	499	1288	110	792	0	FALSE	ACH-000947
OVK18_OVARY	RP11-81H14.2--RAP1B	5	0	RP11-81H14.2	2450	chr12:68835844:-	RAP1B	20164	chr12:69042479:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0431	0	RP11-81H14.2->chr12:68726668-68845443:-,RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+	OVK18_OVARY	1	1	0.0431	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	MT-ND4--MT-ND4L	3	7	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	4	0	0.71	1	0.0259	0.0604	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVK18_OVARY	0.71	1	0.0863	FALSE	344	826	44	306	0	FALSE	ACH-000947
OVK18_OVARY	AC027612.3--AP000345.1	4	1	AC027612.3	3881	chr2:91893844:-	AP000345.1	13932	chr22:23825313:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0345	0.0086	AC027612.3->chr2:91874128-91902771:-,AP000345.1->chr22:23804273-23829167:-	OVK18_OVARY	1	1	0.0431	TRUE	0	0	0	11	0	TRUE	ACH-000947
OVK18_OVARY	ATP6V0C--MT-CO2	4	0	ATP6V0C	2886	chr16:2569357:+	MT-CO2	6967	chrM:7804:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	ATP6V0C->ATPase_H+_transporting_V0_subunit_c,chr16:2563871-2570219:+,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	OVK18_OVARY	1	1	0.0345	FALSE	0	0	0	9	0	FALSE	ACH-000947
OVK18_OVARY	MT-CO3--MT-ATP6	3	4	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	3	0	0.7	1	0.0259	0.0345	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OVK18_OVARY	0.7	1	0.0604	FALSE	189	492	56	216	0	FALSE	ACH-000947
OVK18_OVARY	MT-CO3--MT-ATP6	3	4	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	5	0	0.58	1	0.0259	0.0345	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OVK18_OVARY	0.58	1	0.0604	FALSE	189	492	56	216	0	FALSE	ACH-000947
OVK18_OVARY	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OVK18_OVARY	1	1	0.0345	FALSE	189	492	56	216	0	FALSE	ACH-000947
OVK18_OVARY	MT-ND4--MT-ND4L	4	0	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0345	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVK18_OVARY	1	1	0.0345	FALSE	344	826	44	306	0	FALSE	ACH-000947
OVK18_OVARY	MT-ND4--MT-ND4L	3	4	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	188	0	0.04	1	0.0259	0.0345	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	OVK18_OVARY	0.04	1	0.0604	FALSE	344	827	44	306	0	FALSE	ACH-000947
OVK18_OVARY	DANCR--GNB1	3	3	DANCR	1530	chr4:53579126:+	GNB1	9431	chr1:1770677:-	ONLY_REF_SPLICE	YES	608	28	0.01	0.18	0.0259	0.0259	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	OVK18_OVARY	0.01	0.18	0.0518	FALSE	0	0	0	8	0	FALSE	ACH-000947
OVK18_OVARY	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	39	1	0.11	0.0259	0.0173	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	OVK18_OVARY	0.11	1	0.0432	TRUE	458	1351	185	561	0	FALSE	ACH-000947
OVK18_OVARY	MT-CO3--MT-ATP6	3	1	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	6	1	0.4	0.0259	0.0086	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	OVK18_OVARY	0.4	1	0.0345	FALSE	189	492	56	216	0	FALSE	ACH-000947
OVK18_OVARY	MT-ND6--MT-TE	3	1	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0259	0.0086	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVK18_OVARY	1	1	0.0345	FALSE	499	1288	110	792	0	FALSE	ACH-000947
OVK18_OVARY	MT-ND6--MT-TE	3	1	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0259	0.0086	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	OVK18_OVARY	1	1	0.0345	FALSE	499	1288	110	792	0	FALSE	ACH-000947
OVK18_OVARY	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0259	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	OVK18_OVARY	1	1	0.0259	TRUE	22	156	2	142	0	FALSE	ACH-000947
OVK18_OVARY	TMSB10--TMSB4X	3	0	TMSB10	1785	chr2:85133533:+	TMSB4X	6738	chrX:12994917:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0259	0	PROTCLUST,TMSB10->Oncogene{Bushman},chr2:85132749-85133795:+,thymosin_beta_10,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	OVK18_OVARY	1	1	0.0259	TRUE	0	1	0	17	1	TRUE	ACH-000947
OVK18_OVARY	RP11-444D3.1--SOX5	2	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	13	1	0.28	0.0173	0.0259	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	OVK18_OVARY	0.28	1	0.0432	TRUE	274	363	69	150	0	FALSE	ACH-000947
OVK18_OVARY	PVT1--MYC	1	6	PVT1	2520	chr8:128808317:+	MYC	30645	chr8:128750497:+	ONLY_REF_SPLICE	YES	84	149	0.08	0.04	0.0086	0.0518	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	OVK18_OVARY	0.04	0.08	0.0604	TRUE	0	6	0	6	0	FALSE	ACH-000947
OVK18_OVARY	CTDSP1--DNM3OS	2	1	CTDSP1	5150	chr2:219267128:+	DNM3OS	12044	chr1:172113577:-	ONLY_REF_SPLICE	YES	162	6	0.02	0.33	0.0173	0.0086	GTEx_FI:{Blood_Vessel=[count:34=pct:9.2],Ovary=[count:11=pct:20.8],Colon=[count:9=pct:4.7],Esophagus=[count:5=pct:1.2],Adipose_Tissue=[count:4=pct:1.3],Breast=[count:4=pct:3.6],Thyroid=[count:4=pct:2.3],Spleen=[count:3=pct:2.7],Lung=[count:3=pct:1.8],Vagina=[count:2=pct:3.6],Uterus=[count:2=pct:4.7],Skin=[count:2=pct:0.6],Prostate=[count:2=pct:3.3],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Nerve=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Testis=[count:1=pct:1.0]},CTDSP1->CTD_small_phosphatase_1,chr2:219262979-219270664:+,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	OVK18_OVARY	0.02	0.33	0.0259	TRUE	71	70	15	9	0	FALSE	ACH-000947
OVK18_OVARY	DANCR--RHOA	2	1	DANCR	1530	chr4:53579126:+	RHOA	10568	chr3:49413024:-	ONLY_REF_SPLICE	YES	608	1713	0	0	0.0173	0.0086	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	OVK18_OVARY	0	0	0.0259	FALSE	0	0	0	1	0	FALSE	ACH-000947
OVK18_OVARY	RP11-444D3.1--SOX5	2	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	21326	chr12:23908658:-	ONLY_REF_SPLICE	YES	0	37	1	0.07	0.0173	0.0086	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	OVK18_OVARY	0.07	1	0.0259	TRUE	0	1	0	5	0	FALSE	ACH-000947
OVK18_OVARY	CTD-2251F13.1--PRKD1	2	0	CTD-2251F13.1	1069	chr14:30766181:-	PRKD1	15947	chr14:30194880:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	CTD-2251F13.1->chr14:30421603-30766249:-,PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1	OVK18_OVARY	1	1	0.0173	TRUE	0	1	0	7	1	TRUE	ACH-000947
OVK18_OVARY	DDX19B--TTC19	2	0	DDX19B	3938	chr16:70333257:+	TTC19	23272	chr17:15905229:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	DDX19B->DEAD-box_helicase_19B,chr16:70323566-70369186:+,TTC19->chr17:15902694-15948329:+,tetratricopeptide_repeat_domain_19	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	EDARADD--ERO1LB	2	0	EDARADD	4069	chr1:236557805:+	ERO1LB	17630	chr1:236433294:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	LOCAL_INVERSION:+:-:[66243],EDARADD->EDAR-associated_death_domain,chr1:236511562-236648214:+,ERO1LB->chr1:236378855-236445319:-	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	HERC4--HNRNPH3	2	0	HERC4	3466	chr10:69832640:-	HNRNPH3	47700	chr10:70098260:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	HERC4->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_4,chr10:69681665-69835105:-,HNRNPH3->chr10:70090931-70102948:+,heterogeneous_nuclear_ribonucleoprotein_H3	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	IP6K1--DAG1	2	0	IP6K1	4174	chr3:49785251:-	DAG1	22750	chr3:49547852:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	IP6K1->chr3:49761727-49823975:-,inositol_hexakisphosphate_kinase_1,DAG1->chr3:49506146-49573048:+,dystroglycan_1	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	NFAT5--CYB5B	2	0	NFAT5	2281	chr16:69600277:+	CYB5B	35547	chr16:69481053:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	LOCAL_REARRANGEMENT:+:[98828],NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	OVK18_OVARY	1	1	0.0173	TRUE	0	3	0	2	0	TRUE	ACH-000947
OVK18_OVARY	PHACTR4--RRAGB	2	0	PHACTR4	1223	chr1:28696336:+	RRAGB	36718	chrX:55782274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	PHACTR4->chr1:28696114-28826881:+,phosphatase_and_actin_regulator_4,RRAGB->Ras_related_GTP_binding_B,chrX:55744172-55785207:+	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	SND1--WDR53	2	0	SND1	15726	chr7:127361454:+	WDR53	41866	chr3:196294178:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1,WDR53->WD_repeat_domain_53,chr3:196281056-196295545:-	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	SPPL2B--MEIS3	2	0	SPPL2B	3404	chr19:2334720:+	MEIS3	22177	chr19:47920607:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	SPPL2B->Oncogene{Bushman},chr19:2328614-2355099:+,signal_peptide_peptidase_like_2B,MEIS3->Meis_homeobox_3,chr19:47906381-47922780:-	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	SPRY4--PPP2R4	2	0	SPRY4	2611	chr5:141704409:-	PPP2R4	28630	chr9:131904724:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	SPRY4->chr5:141689992-141706020:-,sprouty_RTK_signaling_antagonist_4,PPP2R4->Oncogene{Bushman},chr9:131873229-131911225:+,protein_phosphatase_2A_regulatory_subunit_4	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	THRAP3--SFPQ	2	0	THRAP3	1090	chr1:36690106:+	SFPQ	33358	chr1:35643637:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	THRAP3->Oncogene{Bushman},chr1:36690017-36770958:+,thyroid_hormone_receptor_associated_protein_3,SFPQ->Oncogene{Bushman},chr1:35641979-35658749:-,splicing_factor_proline/glutamine-rich	OVK18_OVARY	1	1	0.0173	TRUE	0	3	0	2	0	TRUE	ACH-000947
OVK18_OVARY	YAF2--USP15	2	0	YAF2	1751	chr12:42631401:-	USP15	24627	chr12:62687960:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0173	0	YAF2->YY1_associated_factor_2,chr12:42550906-42632151:-,USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15	OVK18_OVARY	1	1	0.0173	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	CECR7--AC008132.1	1	3	CECR7	1775	chr22:17518234:+	AC008132.1	14128	chr22:18724072:+	ONLY_REF_SPLICE	YES	7	0	0.36	1	0.0086	0.0259	CECR7->cat_eye_syndrome_chromosome_region,_candidate_7_(non-protein_coding),chr22:17517460-17541715:+,AC008132.1->chr22:18721427-18745407:+	OVK18_OVARY	0.36	1	0.0345	TRUE	0	0	0	5	0	TRUE	ACH-000947
OVK18_OVARY	DANCR--GNB1	1	3	DANCR	1530	chr4:53579126:+	GNB1	8987	chr1:1771121:-	ONLY_REF_SPLICE	NO	608	27	0.01	0.13	0.0086	0.0259	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	OVK18_OVARY	0.01	0.13	0.0345	FALSE	0	0	0	8	0	FALSE	ACH-000947
OVK18_OVARY	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	18992	chr12:23999127:-	ONLY_REF_SPLICE	YES	0	34	1	0.08	0.0086	0.0173	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	OVK18_OVARY	0.08	1	0.0259	TRUE	3	4	0	10	0	FALSE	ACH-000947
OVK18_OVARY	TIMM23--RP11-464F9.1	1	2	TIMM23	5841	chr10:51610393:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	215	1	0.01	0.75	0.0086	0.0173	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	OVK18_OVARY	0.01	0.75	0.0259	FALSE	1	12	0	11	0	FALSE	ACH-000947
OVK18_OVARY	ARID3A--MUM1	1	1	ARID3A	4961	chr19:932742:+	MUM1	32394	chr19:1369264:+	ONLY_REF_SPLICE	YES	68	90	0.03	0.02	0.0086	0.0086	ARID3A->AT-rich_interaction_domain_3A,chr19:925781-975939:+,MUM1->chr19:1285890-1378430:+,melanoma_associated_antigen_(mutated)_1	OVK18_OVARY	0.02	0.03	0.0172	TRUE	0	0	0	1	0	FALSE	ACH-000947
OVK18_OVARY	C9orf3--FANCC	1	1	C9orf3	24370	chr9:97767898:+	FANCC	52191	chr9:97897784:-	ONLY_REF_SPLICE	YES	412	48	0	0.04	0.0086	0.0086	LOCAL_INVERSION:+:-:[11895],C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,FANCC->ArcherDX_panel,Fanconi_anemia_complementation_group_C,FoundationOne_panel,Oncogene{Bushman},chr9:97861336-98079991:-	OVK18_OVARY	0	0.04	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000947
OVK18_OVARY	C9orf3--FANCC	1	1	C9orf3	24370	chr9:97767898:+	FANCC	43149	chr9:98011651:-	ONLY_REF_SPLICE	YES	412	37	0	0.05	0.0086	0.0086	LOCAL_INVERSION:+:-:[11895],C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,FANCC->ArcherDX_panel,Fanconi_anemia_complementation_group_C,FoundationOne_panel,Oncogene{Bushman},chr9:97861336-98079991:-	OVK18_OVARY	0	0.05	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000947
OVK18_OVARY	C9orf3--FANCC	1	1	C9orf3	24370	chr9:97767898:+	FANCC	54187	chr9:97888863:-	ONLY_REF_SPLICE	NO	412	45	0	0.04	0.0086	0.0086	LOCAL_INVERSION:+:-:[11895],C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3,FANCC->ArcherDX_panel,Fanconi_anemia_complementation_group_C,FoundationOne_panel,Oncogene{Bushman},chr9:97861336-98079991:-	OVK18_OVARY	0	0.04	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000947
OVK18_OVARY	CPSF6--C9orf3	1	1	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	158	563	0.01	0	0.0086	0.0086	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	OVK18_OVARY	0	0.01	0.0172	FALSE	53	99	2	44	0	FALSE	ACH-000947
OVK18_OVARY	EMC1--ZNF141	1	1	EMC1	12320	chr1:19559118:-	ZNF141	37385	chr4:376884:+	ONLY_REF_SPLICE	YES	176	4	0.01	0.33	0.0086	0.0086	EMC1->ER_membrane_protein_complex_subunit_1,chr1:19542158-19578046:-,ZNF141->chr4:331603-378653:+,zinc_finger_protein_141	OVK18_OVARY	0.01	0.33	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000947
OVK18_OVARY	EPB41L4A-AS1--PHF20	1	1	EPB41L4A-AS1	1770	chr5:111496992:+	PHF20	11220	chr20:34389413:+	ONLY_REF_SPLICE	YES	44	0	0.04	1	0.0086	0.0086	EPB41L4A-AS1->EPB41L4A_antisense_RNA_1,chr5:111496223-111499973:+,PHF20->Oncogene{Bushman},PHD_finger_protein_20,chr20:34359896-34538303:+	OVK18_OVARY	0.04	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	GGACT--PCCA	1	1	GGACT	3102	chr13:101236079:-	PCCA	38632	chr13:101167681:+	ONLY_REF_SPLICE	NO	38	88	0.05	0.02	0.0086	0.0086	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Breast=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Pancreas=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=10;pct=0.12%;dist=Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Artery_-_Aorta=1,Kidney_-_Cortex=1,Esophagus_-_Mucosa=1,Nerve_-_Tibial=1,Cells_-_Transformed_fibroblasts=1},LOCAL_INVERSION:-:+:[1124],GGACT->chr13:101183810-101241782:-,gamma-glutamylamine_cyclotransferase,PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit	OVK18_OVARY	0.02	0.05	0.0172	TRUE	0	2	0	1	0	FALSE	ACH-000947
OVK18_OVARY	IL4I1--PTOV1	1	1	IL4I1	2336	chr19:50430951:-	PTOV1	17171	chr19:50357663:+	ONLY_REF_SPLICE	YES	0	51	1	0.04	0.0086	0.0086	LOCAL_INVERSION:-:+:[28910],IL4I1->chr19:50392911-50432796:-,interleukin_4_induced_1,PTOV1->chr19:50353992-50364001:+,prostate_tumor_overexpressed_1	OVK18_OVARY	0.04	1	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	ME3--PRSS23	1	1	ME3	5719	chr11:86267595:-	PRSS23	26070	chr11:86518673:+	ONLY_REF_SPLICE	YES	214	859	0.01	0	0.0086	0.0086	ME3->Oncogene{Bushman},chr11:86152150-86383678:-,malic_enzyme_3,PRSS23->chr11:86502101-86663952:+,protease,_serine_23	OVK18_OVARY	0	0.01	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000947
OVK18_OVARY	NAPG--C9orf91	1	1	NAPG	1254	chr18:10526155:+	C9orf91	19273	chr9:117379398:+	ONLY_REF_SPLICE	YES	38	1	0.05	0.67	0.0086	0.0086	NAPG->NSF_attachment_protein_gamma,chr18:10525902-10552758:+,C9orf91->chr9:117373486-117408702:+,chromosome_9_open_reading_frame_91	OVK18_OVARY	0.05	0.67	0.0172	TRUE	0	0	0	1	0	TRUE	ACH-000947
OVK18_OVARY	NFAT5--CYB5B	1	1	NFAT5	3335	chr16:69602451:+	CYB5B	35547	chr16:69481053:+	ONLY_REF_SPLICE	NO	17	2160	0.11	0	0.0086	0.0086	LOCAL_REARRANGEMENT:+:[98828],NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	OVK18_OVARY	0	0.11	0.0172	FALSE	0	3	0	1	1	FALSE	ACH-000947
OVK18_OVARY	RBM6--RHOA	1	1	RBM6	3185	chr3:50000118:+	RHOA	37115	chr3:49413024:-	ONLY_REF_SPLICE	YES	85	1713	0.02	0	0.0086	0.0086	GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Lung=1,Pituitary=1,Nerve_-_Tibial=1,Muscle_-_Skeletal=1},RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A	OVK18_OVARY	0	0.02	0.0172	FALSE	0	4	1	6	1	FALSE	ACH-000947
OVK18_OVARY	RP11-444D3.1--SOX5	1	1	RP11-444D3.1	1253	chr12:24715272:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	8	13	0.2	0.13	0.0086	0.0086	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	OVK18_OVARY	0.13	0.2	0.0172	TRUE	0	1	1	7	0	FALSE	ACH-000947
OVK18_OVARY	RP13-188A5.1--KLF8	1	1	RP13-188A5.1	1678	chrX:55935233:+	KLF8	9003	chrX:56291613:+	ONLY_REF_SPLICE	YES	2	1	0.5	0.67	0.0086	0.0086	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	OVK18_OVARY	0.5	0.67	0.0172	TRUE	1	9	1	5	7	TRUE	ACH-000947
OVK18_OVARY	SLC25A44--CCT3	1	1	SLC25A44	1159	chr1:156164038:+	CCT3	18719	chr1:156304709:-	ONLY_REF_SPLICE	YES	95	2236	0.02	0	0.0086	0.0086	LOCAL_INVERSION:+:-:[96172],SLC25A44->chr1:156163880-156182587:+,solute_carrier_family_25_member_44,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	OVK18_OVARY	0	0.02	0.0172	FALSE	0	0	0	1	0	FALSE	ACH-000947
OVK18_OVARY	TAF3--TMEM126B	1	1	TAF3	1372	chr10:7860838:+	TMEM126B	16350	chr11:85342189:+	ONLY_REF_SPLICE	YES	30	34	0.06	0.06	0.0086	0.0086	TAF3->TATA-box_binding_protein_associated_factor_3,chr10:7860467-8058590:+,TMEM126B->chr11:85339629-85347580:+,transmembrane_protein_126B	OVK18_OVARY	0.06	0.06	0.0172	TRUE	0	0	0	1	0	FALSE	ACH-000947
OVK18_OVARY	TRAPPC9--KCNK9	1	1	TRAPPC9	55504	chr8:140898123:-	KCNK9	68604	chr8:140631342:-	ONLY_REF_SPLICE	YES	52	0	0.04	1	0.0086	0.0086	{Klijn_CCL:Lung=1},NEIGHBORS[27287],TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,KCNK9->chr8:140613081-140715299:-,potassium_two_pore_domain_channel_subfamily_K_member_9	OVK18_OVARY	0.04	1	0.0172	FALSE	7	13	2	16	0	FALSE	ACH-000947
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	237	234	PVT1	1202	chr8:128806980:+	ZCCHC7	36876	chr9:37302185:+	ONLY_REF_SPLICE	YES	13	37	0.97	0.93	2.6818	2.6479	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	0.97	5.3297	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	100	274	PVT1	2457	chr8:128808254:+	ZCCHC7	36876	chr9:37302185:+	ONLY_REF_SPLICE	YES	8	37	0.98	0.91	1.1316	3.1005	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	0.98	4.2321	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POU2F2--FRG1	128	46	POU2F2	6526	chr19:42626278:-	FRG1	30898	chr4:190878553:+	ONLY_REF_SPLICE	YES	44	70	0.8	0.71	1.4484	0.5205	POU2F2->Oncogene{Bushman},POU_class_2_homeobox_2,chr19:42590263-42700737:-,FRG1->FSHD_region_gene_1,chr4:190861943-190884359:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.8	1.9689	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	44	293	PVT1	2520	chr8:128808317:+	ZCCHC7	36876	chr9:37302185:+	ONLY_REF_SPLICE	YES	10	37	0.97	0.9	0.4979	3.3155	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.9	0.97	3.8134	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	2	212	PVT1	2520	chr8:128808317:+	ZCCHC7	37920	chr9:37304185:+	ONLY_REF_SPLICE	YES	10	62	0.96	0.78	0.0226	2.3989	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	0.96	2.4215	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	3	197	PVT1	2457	chr8:128808254:+	ZCCHC7	37920	chr9:37304185:+	ONLY_REF_SPLICE	YES	8	62	0.96	0.76	0.0339	2.2292	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.76	0.96	2.2631	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	10	166	PVT1	1202	chr8:128806980:+	ZCCHC7	37920	chr9:37304185:+	ONLY_REF_SPLICE	YES	13	62	0.93	0.74	0.1132	1.8784	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	0.93	1.9916	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	35	11	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.396	0.1245	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5205	TRUE	508	994	45	981	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ICMT--SZRD1	28	22	ICMT	4717	chr1:6291962:-	SZRD1	19135	chr1:16717870:+	ONLY_REF_SPLICE	YES	30	2	0.62	0.96	0.3168	0.2489	ICMT->chr1:6281253-6296032:-,isoprenylcysteine_carboxyl_methyltransferase,SZRD1->SUZ_RNA_binding_domain_containing_1,chr1:16679070-16724640:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	0.96	0.5657	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBWD6--FBXO10	28	10	CBWD6	14937	chr9:69240013:-	FBXO10	40581	chr9:37532055:-	ONLY_REF_SPLICE	YES	34	4	0.53	0.9	0.3168	0.1132	CBWD6->COBW_domain_containing_6,chr9:69204538-69269662:-,FBXO10->F-box_protein_10,chr9:37510889-37588871:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	0.9	0.43	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	3	94	PVT1	2457	chr8:128808254:+	ZCCHC7	39046	chr9:37305541:+	ONLY_REF_SPLICE	YES	8	212	0.92	0.31	0.0339	1.0637	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.92	1.0976	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	1	96	PVT1	2520	chr8:128808317:+	ZCCHC7	39046	chr9:37305541:+	ONLY_REF_SPLICE	NO	10	212	0.91	0.31	0.0113	1.0863	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.91	1.0976	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	22	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2489	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2489	TRUE	519	3926	326	965	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	2	76	PVT1	1202	chr8:128806980:+	ZCCHC7	39046	chr9:37305541:+	ONLY_REF_SPLICE	YES	13	212	0.86	0.27	0.0226	0.86	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.86	0.8826	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	16	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1811	0.0226	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2037	FALSE	462	80	0	856	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ICMT--SZRD1	10	17	ICMT	4717	chr1:6291962:-	SZRD1	20188	chr1:16719726:+	ONLY_REF_SPLICE	YES	30	21	0.47	0.56	0.1132	0.1924	ICMT->chr1:6281253-6296032:-,isoprenylcysteine_carboxyl_methyltransferase,SZRD1->SUZ_RNA_binding_domain_containing_1,chr1:16679070-16724640:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.47	0.56	0.3056	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUS1--RP11-667F9.2	14	0	NUS1	1584	chr6:117997248:+	RP11-667F9.2	12842	chr7:64928286:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1584	0	NUS1->NUS1_dehydrodolichyl_diphosphate_synthase_subunit,chr6:117996665-118031803:+,RP11-667F9.2->chr7:64927984-64928351:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1584	TRUE	0	1	0	2	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXO10--CBWD7	9	1	FBXO10	6315	chr9:37537107:-	CBWD7	31842	chr9:42683890:+	ONLY_REF_SPLICE	YES	4	36	0.71	0.22	0.1018	0.0113	FBXO10->F-box_protein_10,chr9:37510889-37588871:-,CBWD7->COBW_domain_containing_7,chr9:42668608-42714962:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.71	0.1131	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	8	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0905	0.0113	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1018	FALSE	499	1288	110	792	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	3	16	PVT1	2457	chr8:128808254:+	ZCCHC7	41982	chr9:37327796:+	ONLY_REF_SPLICE	YES	8	296	0.7	0.06	0.0339	0.1811	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.7	0.215	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ICMT--SZRD1	2	19	ICMT	4717	chr1:6291962:-	SZRD1	20185	chr1:16719723:+	ONLY_REF_SPLICE	YES	30	22	0.41	0.49	0.0226	0.215	ICMT->chr1:6281253-6296032:-,isoprenylcysteine_carboxyl_methyltransferase,SZRD1->SUZ_RNA_binding_domain_containing_1,chr1:16679070-16724640:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.49	0.2376	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	6	2	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2031	0	0	1	0.0679	0.0226	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0905	FALSE	13	9	0	364	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ICMT--SZRD1	1	22	ICMT	4717	chr1:6291962:-	SZRD1	16570	chr1:16713550:+	ONLY_REF_SPLICE	YES	30	2	0.43	0.92	0.0113	0.2489	ICMT->chr1:6281253-6296032:-,isoprenylcysteine_carboxyl_methyltransferase,SZRD1->SUZ_RNA_binding_domain_containing_1,chr1:16679070-16724640:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.43	0.92	0.2602	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0566	0.0566	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1132	FALSE	499	1288	110	792	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0566	0.0226	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0792	FALSE	499	1288	110	792	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	5	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0566	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0566	FALSE	183	104	9	328	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	5	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0566	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0566	FALSE	351	233	23	137	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	2	12	PVT1	2457	chr8:128808254:+	ZCCHC7	43018	chr9:37349354:+	ONLY_REF_SPLICE	YES	8	288	0.64	0.05	0.0226	0.1358	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.64	0.1584	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POU2F2--FRG1	2	10	POU2F2	6526	chr19:42626278:-	FRG1	32003	chr4:190881903:+	ONLY_REF_SPLICE	YES	44	71	0.21	0.14	0.0226	0.1132	POU2F2->Oncogene{Bushman},POU_class_2_homeobox_2,chr19:42590263-42700737:-,FRG1->FSHD_region_gene_1,chr4:190861943-190884359:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.21	0.1358	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZCCHC7--CBWD3	4	2	ZCCHC7	3765	chr9:37126939:+	CBWD3	24893	chr9:70860129:+	ONLY_REF_SPLICE	YES	48	164	0.11	0.04	0.0453	0.0226	ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7,CBWD3->COBW_domain_containing_3,chr9:70856397-70914929:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.11	0.0679	TRUE	0	0	0	1	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDKAL1--GOLGA8A	4	0	CDKAL1	12003	chr6:21000603:+	GOLGA8A	34056	chr15:34699936:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0453	0	CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+,GOLGA8A->chr15:34671269-34880704:-,golgin_A8_family_member_A	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0453	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C1orf194--UQCR10	3	2	C1orf194	3284	chr1:109650635:-	UQCR10	8361	chr22:30163372:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0.0226	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.41%,GTEx_FI:{Testis=[count:16=pct:15.2],Pituitary=[count:4=pct:7.7],Lung=[count:4=pct:2.4],Brain=[count:3=pct:0.5],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Fallopian_Tube=[count:1=pct:16.7],Thyroid=[count:1=pct:0.6],Stomach=[count:1=pct:1.1],Prostate=[count:1=pct:1.6]},GTEx_v2:{count=13;pct=0.15%;dist=Testis=12,Adipose_-_Subcutaneous=1},C1orf194->chr1:109648573-109656479:-,chromosome_1_open_reading_frame_194,UQCR10->chr22:30163358-30166402:+,ubiquinol-cytochrome_c_reductase,_complex_III_subunit_X	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0565	TRUE	26	6	0	14	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--ZCCHC7	1	9	PVT1	1202	chr8:128806980:+	ZCCHC7	41982	chr9:37327796:+	ONLY_REF_SPLICE	YES	13	296	0.43	0.03	0.0113	0.1018	Mitelman{DLBL=2},PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.43	0.1131	TRUE	0	0	0	1	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRAF3IP1--ESPNL	3	1	TRAF3IP1	14554	chr2:239264721:+	ESPNL	29558	chr2:239036263:+	ONLY_REF_SPLICE	YES	1	8	0.8	0.33	0.0339	0.0113	TRAF3IP1->TRAF3_interacting_protein_1,chr2:239229082-239309541:+,ESPNL->chr2:239008798-239041928:+,espin-like	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.8	0.0452	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AVL9--ABCC4	3	0	AVL9	1377	chr7:32535414:+	ABCC4	59518	chr13:95735544:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	AVL9->AVL9_cell_migration_associated,chr7:32535038-33078516:+,ABCC4->ATP_binding_cassette_subfamily_C_member_4,chr13:95672083-95953687:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CORO7--MT-ND4	3	0	CORO7	26006	chr16:4405076:-	MT-ND4	29825	chrM:11045:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	CORO7->chr16:4404543-4475706:-,coronin_7,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	FALSE	0	0	0	1	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LCP1--ATP6V1C1	3	0	LCP1	12931	chr13:46726976:-	ATP6V1C1	42766	chr8:104083072:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LCP1->Oncogene{Bushman},chr13:46700055-46786006:-,lymphocyte_cytosolic_protein_1,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ATP6--MT-CO1	3	0	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	FALSE	183	104	9	328	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MCM10	3	0	MT-ND6	1336	chrM:14338:-	MCM10	25451	chr10:13252571:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MCM10->chr10:13203554-13253104:+,minichromosome_maintenance_10_replication_initiation_factor	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	FALSE	0	0	0	1	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGGTB--CARS2	3	0	RABGGTB	2411	chr1:76253289:+	CARS2	37023	chr13:111296830:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	RABGGTB->Oncogene{Bushman},Rab_geranylgeranyltransferase_beta_subunit,chr1:76251879-76260764:+,CARS2->chr13:111293759-111365950:-,cysteinyl-tRNA_synthetase_2,_mitochondrial_(putative)	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-158H5.7--ZNF397	3	0	RP11-158H5.7	1118	chr18:32870048:-	ZNF397	11505	chr18:32823116:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	LOCAL_INVERSION:-:+:[13734],RP11-158H5.7->chr18:32860831-32870165:-,ZNF397->chr18:32820994-32847097:+,zinc_finger_protein_397	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-435B5.4--SNX29	3	0	RP11-435B5.4	2843	chr1:143465380:-	SNX29	41219	chr16:12371790:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	RP11-435B5.4->chr1:143354963-143467632:-,SNX29->Oncogene{Bushman},chr16:12070594-12668146:+,sorting_nexin_29	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THAP2--C14orf132	3	0	THAP2	1767	chr12:72057555:+	C14orf132	23581	chr14:96559284:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	THAP2->THAP_domain_containing,_apoptosis_associated_protein_2,chr12:72056789-72074419:+,C14orf132->chr14:96505661-96560417:+,chromosome_14_open_reading_frame_132	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRIM28--DYNLL2	3	0	TRIM28	1429	chr19:59055886:+	DYNLL2	10551	chr17:56160932:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0339	0	TRIM28->chr19:59055458-59062089:+,tripartite_motif_containing_28,DYNLL2->chr17:56160776-56172897:+,dynein_light_chain_LC8-type_2	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	YIPF6--BAZ1B	3	0	YIPF6	2933	chrX:67730618:+	BAZ1B	22420	chr7:72922801:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0339	0	GTEx&tcga_normals:1/3694=0.03%,YIPF6->Yip1_domain_family_member_6,chrX:67718165-67757127:+,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	TRUE	1	23	1	24	8	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGEF7--ADK	2	0	ARHGEF7	14026	chr13:111885640:+	ADK	50792	chr10:76285014:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ARHGEF7->Rho_guanine_nucleotide_exchange_factor_7,chr13:111766906-111958084:+,ADK->adenosine_kinase,chr10:75910960-76469061:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARL11--RABGAP1L	2	0	ARL11	1317	chr13:50202751:+	RABGAP1L	33418	chr1:174668663:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ARL11->ADP_ribosylation_factor_like_GTPase_11,chr13:50202435-50208008:+,RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C14orf37--ZBTB1	2	0	C14orf37	1185	chr14:58764673:-	ZBTB1	26243	chr14:64988205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,ZBTB1->chr14:64970430-65000408:+,zinc_finger_and_BTB_domain_containing_1	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CCDC53--ZC2HC1B	2	0	CCDC53	10884	chr12:102419752:-	ZC2HC1B	19600	chr6:144205441:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	CCDC53->chr12:102406705-102455927:-,coiled-coil_domain_containing_53,ZC2HC1B->chr6:144185573-144259483:+,zinc_finger_C2HC-type_containing_1B	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUX2--DNMT1	2	0	CUX2	26089	chr12:111779857:+	DNMT1	39486	chr19:10292753:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	CUX2->chr12:111471828-111788358:+,cut_like_homeobox_2,DNMT1->DNA_(cytosine-5-)-methyltransferase_1,Oncogene{Bushman},chr19:10244021-10341962:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DIDO1--RAC2	2	0	DIDO1	1157	chr20:61569148:-	RAC2	34929	chr22:37622843:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	DIDO1->chr20:61509090-61569304:-,death_inducer-obliterator_1,RAC2->Oncogene{Bushman},chr22:37621301-37640488:-,ras-related_C3_botulinum_toxin_substrate_2_(rho_family,_small_GTP_binding_protein_Rac2)	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EAF2--GSK3B	2	0	EAF2	4689	chr3:121563394:+	GSK3B	26258	chr3:119545702:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	EAF2->ELL_associated_factor_2,chr3:121554030-121605373:+,GSK3B->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:119540170-119813264:-,glycogen_synthase_kinase_3_beta	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF3J--TRIP4	2	0	EIF3J	1371	chr15:44829625:+	TRIP4	26273	chr15:64737205:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J,TRIP4->chr15:64679947-64747502:+,thyroid_hormone_receptor_interactor_4	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF5B--RMND5A	2	0	EIF5B	1237	chr2:99954052:+	RMND5A	30585	chr2:86979019:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	EIF5B->chr2:99953816-100017789:+,eukaryotic_translation_initiation_factor_5B,RMND5A->chr2:86947296-87005164:+,required_for_meiotic_nuclear_division_5_homolog_A	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GMDS--FIP1L1	2	0	GMDS	10931	chr6:1930337:-	FIP1L1	38352	chr4:54319087:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,FIP1L1->Oncogene{Bushman},chr4:54243810-55161439:+,factor_interacting_with_PAPOLA_and_CPSF1	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GMDS--WDR43	2	0	GMDS	13147	chr6:1726650:-	WDR43	34635	chr2:29150435:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,WDR43->WD_repeat_domain_43,chr2:29117509-29171088:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ILF2--GTF2I	2	0	ILF2	4235	chr1:153640031:-	GTF2I	41665	chr7:74163605:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ILF2->chr1:153634512-153643524:-,interleukin_enhancer_binding_factor_2,GTF2I->chr7:74071994-74175026:+,general_transcription_factor_IIi	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MKL1--RBX1	2	0	MKL1	3549	chr22:40948110:-	RBX1	28434	chr22:41363803:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},MKL1->Oncogene{Bushman},chr22:40806285-41032706:-,megakaryoblastic_leukemia_(translocation)_1,RBX1->Oncogene{Bushman},chr22:41347351-41369313:+,ring-box_1	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MS4A1--ISY1	2	0	MS4A1	1194	chr11:60223418:+	ISY1	17358	chr3:128877402:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MS4A1->chr11:60223225-60238233:+,membrane_spanning_4-domains_A1,ISY1->ISY1_splicing_factor_homolog,chr3:128846258-128880136:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYL6--SUZ12P	2	0	MYL6	2462	chr12:56553406:+	SUZ12P	19323	chr17:29096019:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,SUZ12P->chr17:29036317-29117926:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYO10--BASP1	2	0	MYO10	4048	chr5:16877718:-	BASP1	57021	chr5:17275317:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},MYO10->chr5:16665395-16936372:-,myosin_X,BASP1->brain_abundant_membrane_attached_signal_protein_1,chr5:17065707-17276943:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	1	0	0	2	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NOP58--ANAPC5	2	0	NOP58	7795	chr2:203152447:+	ANAPC5	44529	chr12:121746494:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NOP58->NOP58_ribonucleoprotein,chr2:203130439-203168389:+,ANAPC5->anaphase_promoting_complex_subunit_5,chr12:121746048-121837699:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUPL2--BAX	2	0	NUPL2	1380	chr7:23221825:+	BAX	15264	chr19:49458805:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,BAX->BCL2_associated_X_protein,Oncogene{Bushman},chr19:49458072-49465055:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OSER1--NDUFA10	2	0	OSER1	1096	chr20:42839336:-	NDUFA10	28445	chr2:240900603:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	OSER1->chr20:42825136-42839431:-,oxidative_stress_responsive_serine_rich_1,NDUFA10->NADH:ubiquinone_oxidoreductase_subunit_A10,chr2:240831867-240964819:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLA2--PABPC4	2	0	POLA2	16555	chr11:65063461:+	PABPC4	31847	chr1:40030445:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	POLA2->chr11:65029233-65073060:+,polymerase_(DNA)_alpha_2,_accessory_subunit,PABPC4->chr1:40026488-40042462:-,poly(A)_binding_protein_cytoplasmic_4	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSMA3--NUP93	2	0	PSMA3	1111	chr14:58711659:+	NUP93	26925	chr16:56852576:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3,NUP93->ArcherDX_panel,FoundationOne_panel,chr16:56764017-56878797:+,nucleoporin_93kDa	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABGAP1L--APBB1IP	2	0	RABGAP1L	13819	chr1:174247917:+	APBB1IP	67202	chr10:26849034:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,APBB1IP->amyloid_beta_precursor_protein_binding_family_B_member_1_interacting_protein,chr10:26727132-26856732:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RABL6--CIC	2	0	RABL6	1405	chr9:139702778:+	CIC	32174	chr19:42790923:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+,CIC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},capicua_transcriptional_repressor,chr19:42772689-42799949:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RARS--BAG1	2	0	RARS	3872	chr5:167919852:+	BAG1	25508	chr9:33259031:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RARS->arginyl-tRNA_synthetase,chr5:167913450-167946304:+,BAG1->BCL2_associated_athanogene_1,Oncogene{Bushman},chr9:33247818-33264761:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL15--FCRL2	2	0	RPL15	1695	chr3:23958730:+	FCRL2	18313	chr1:157719467:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	RPL15->chr3:23958036-23965183:+,ribosomal_protein_L15,FCRL2->Fc_receptor_like_2,chr1:157715523-157746922:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SH3BGRL--BRWD3	2	0	SH3BGRL	1303	chrX:80457744:+	BRWD3	12699	chrX:80049271:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},SH3BGRL->SH3_domain_binding_glutamate_rich_protein_like,chrX:80457442-80554046:+,BRWD3->Oncogene{Bushman},bromodomain_and_WD_repeat_domain_containing_3,chrX:79926353-80065187:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SHFM1--ACN9	2	0	SHFM1	7020	chr7:96324110:-	ACN9	29383	chr7:96810324:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},SHFM1->chr7:96110938-96339203:-,split_hand/foot_malformation_(ectrodactyly)_type_1,ACN9->chr7:96745902-96811075:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	2	0	2	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMAD5--TMEM38B	2	0	SMAD5	1118	chr5:135468651:+	TMEM38B	26878	chr9:108467878:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	SMAD5->SMAD_family_member_5,chr5:135468534-135524435:+,TMEM38B->chr9:108456825-108538893:+,transmembrane_protein_38B	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ST6GAL1--EDEM1	2	0	ST6GAL1	4245	chr3:186666726:+	EDEM1	34104	chr3:5236894:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ST6GAL1->Oncogene{Bushman},ST6_beta-galactoside_alpha-2,6-sialyltransferase_1,chr3:186648274-186796341:+,EDEM1->ER_degradation_enhancing_alpha-mannosidase_like_protein_1,chr3:5229331-5261642:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAF3--ATP5C1	2	0	TAF3	2615	chr10:7866523:+	ATP5C1	16733	chr10:7839010:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:+:[10689],TAF3->TATA-box_binding_protein_associated_factor_3,chr10:7860467-8058590:+,ATP5C1->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_gamma_polypeptide_1,chr10:7830092-7849778:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	2	0	4	2	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP15--RAP1B	2	0	USP15	1166	chr12:62654284:+	RAP1B	42757	chr12:69042479:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	GTEx&tcga_normals:1/3694=0.03%,USP15->Oncogene{Bushman},chr12:62654119-62811211:+,ubiquitin_specific_peptidase_15,RAP1B->Oncogene{Bushman},RAP1B,_member_of_RAS_oncogene_family,chr12:69004619-69054372:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XRCC5--IKZF2	2	0	XRCC5	2602	chr2:216974180:+	IKZF2	38038	chr2:213921823:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	XRCC5->X-ray_repair_complementing_defective_repair_in_Chinese_hamster_cells_5,chr2:216972187-217071026:+,IKZF2->IKAROS_family_zinc_finger_2,Oncogene{Bushman},chr2:213864429-214017151:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZCCHC7--YIPF4	2	0	ZCCHC7	3765	chr9:37126939:+	YIPF4	23418	chr2:32515552:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ZCCHC7->chr9:37120536-37358146:+,zinc_finger_CCHC-type_containing_7,YIPF4->Yip1_domain_family_member_4,chr2:32502979-32541663:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF66--SLC30A6	2	0	ZNF66	4542	chr19:20976684:+	SLC30A6	27136	chr2:32434562:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0	ZNF66->chr19:20959110-20991922:+,zinc_finger_protein_66,SLC30A6->chr2:32390933-32449448:+,solute_carrier_family_30_member_6	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSPH--CCT6A	1	2	PSPH	1467	chr7:56118831:-	CCT6A	21562	chr7:56127237:+	ONLY_REF_SPLICE	YES	39	409	0.07	0.01	0.0113	0.0226	LOCAL_INVERSION:-:+:[26],PSPH->chr7:56078744-56119297:-,phosphoserine_phosphatase,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.07	0.0339	FALSE	0	0	0	1	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	1	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0113	0.0226	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0339	TRUE	62	24	1	171	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBWD6--FBXO10	1	1	CBWD6	12745	chr9:69245076:-	FBXO10	41731	chr9:37529257:-	ONLY_REF_SPLICE	YES	29	10	0.06	0.17	0.0113	0.0113	CBWD6->COBW_domain_containing_6,chr9:69204538-69269662:-,FBXO10->F-box_protein_10,chr9:37510889-37588871:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.17	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CUL3--RHBDD1	1	1	CUL3	1450	chr2:225449661:-	RHBDD1	49696	chr2:227860147:+	ONLY_REF_SPLICE	YES	32	24	0.06	0.08	0.0113	0.0113	CUL3->ArcherDX_panel,FoundationOne_panel,chr2:225334867-225450110:-,cullin_3,RHBDD1->chr2:227700297-227863931:+,rhomboid_domain_containing_1	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.08	0.0226	TRUE	0	0	0	1	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLS1--RRM1	1	1	PLS1	1123	chr3:142315351:+	RRM1	34187	chr11:4130874:+	ONLY_REF_SPLICE	YES	0	192	1	0.01	0.0113	0.0113	PLS1->chr3:142315229-142432506:+,plastin_1,RRM1->Oncogene{Bushman},chr11:4115937-4160106:+,ribonucleotide_reductase_catalytic_subunit_M1	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0226	FALSE	0	0	0	1	0	FALSE	ACH-000611
SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TBL1XR1--CHDH	1	1	TBL1XR1	1353	chr3:176914909:-	CHDH	35730	chr3:53875026:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0113	0.0113	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,CHDH->choline_dehydrogenase,chr3:53846362-53880417:-	SUDHL6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000611
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	616	105	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	6356	chr1:149590973:-	ONLY_REF_SPLICE	YES	0	0	1	1	6.2794	1.0704	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	7.3498	TRUE	361	258	24	38	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1--ALK	325	85	NPM1	4640	chr5:170818803:+	ALK	39665	chr2:29446394:-	ONLY_REF_SPLICE	YES	1381	1	0.23	1	3.313	0.8665	Cosmic{samples=1344,mutations=319,papers=85},Mitelman{PTL=2,MTC_NOS=2,ALCL-S=2,DLBL=2,MBC_NOS=2},chimerdb_omim:{innon-Hodgkin'slymphoma},chimerdb_omim:{lymphoma},chimerdb_pubmed{Bcell lymphomas,anaplastic large cell lymphoma,anaplastic largecell lymphomas (ALCLs),myelodysplastic syndrome, acute myeloid leukemia,pediatric anaplastic large cell lymphomas,Anaplastic largecell lymphomas (ALCL),anaplastic largecell lymphoma,anaplastic largecell lymphoma (ALCL),Anaplastic large cell lymphomas (ALCL),Anaplastic large cell lymphomas ,Anaplastic lymphoma kinase (ALK),Anaplastic largecell lymphoma (ALCL),nonHodgkin's lymphoma,Anaplastic largecell lymphoma (ALCL), nonHodgkin's lymphomas (NHLs) ,Anaplastic large Tcell lymphoma with CD30 and ALK expression in children and adolescents,anaplastic large cell lymphoma (ALCL),Anaplastic large cell lymphoma (ALCL),ALKpositive lymphoma,T/nullcell lymphoma ,anaplastic large cell(ALC) lymphomas,anaplastic large cell lymphomas (ALCLs),anaplastic large cell lymphoma (ALCL), nonHodgkin's lymphomas (NHL),anaplastic lymphoma kinase (ALK)positive nonHodgkin lymphomas,ALCL ,Anaplastic largecell lymphoma,Anaplastic large cell lymphoma (ALCL) and Hodgkin's disease (HD),large Bcell lymphoma,nonHodgkin lymphoma},{Klijn_CCL:Lymphoid=2},NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin),ALK->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},anaplastic_lymphoma_receptor_tyrosine_kinase,chr2:29415640-30144432:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	4.1795	TRUE	0	0	0	6	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EFTUD2--IFIH1	153	53	EFTUD2	3961	chr17:42971785:-	IFIH1	50158	chr2:163124787:-	ONLY_REF_SPLICE	YES	192	12	0.52	0.94	1.5597	0.5403	EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.94	2.1	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLTC--VMP1	141	49	CLTC	1316	chr17:57697534:+	VMP1	53132	chr17:57915656:+	ONLY_REF_SPLICE	YES	101	198	0.65	0.49	1.4373	0.4995	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.49	0.65	1.9368	FALSE	0	6	0	10	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	61	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6218	0.1427	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.7645	TRUE	508	994	45	981	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	50	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5097	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5097	TRUE	0	0	0	518	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	39	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3976	0.0408	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4384	FALSE	462	80	0	856	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	39	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3976	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3976	TRUE	519	3926	326	965	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	10	105	WI2-1896O14.1	2566	chr1:144676874:-	RP11-353N4.1	5570	chr1:149591759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1019	1.0704	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1723	TRUE	361	258	24	38	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MED16--SBNO2	33	11	MED16	3843	chr19:890179:-	SBNO2	28080	chr19:1127766:-	INCL_NON_REF_SPLICE	YES	27	586	0.62	0.07	0.3364	0.1121	MED16->chr19:867962-893218:-,mediator_complex_subunit_16,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.62	0.4485	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WI2-1896O14.1--RP11-353N4.1	5	105	WI2-1896O14.1	2570	chr1:144676870:-	RP11-353N4.1	6356	chr1:149590973:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.051	1.0704	GTEx_FI:{Brain=[count:231=pct:35.1],Heart=[count:220=pct:87.6],Muscle=[count:210=pct:89.4],Blood_Vessel=[count:50=pct:13.6],Esophagus=[count:31=pct:7.7],Pituitary=[count:16=pct:30.8],Adipose_Tissue=[count:9=pct:3.0],Nerve=[count:7=pct:4.1],Stomach=[count:6=pct:6.7],Skin=[count:6=pct:1.9],Lung=[count:6=pct:3.6],Salivary_Gland=[count:4=pct:10.3],Blood=[count:3=pct:1.7],Thyroid=[count:3=pct:1.7],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Prostate=[count:2=pct:3.3],Liver=[count:2=pct:1.7],Adrenal_Gland=[count:1=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3]},WI2-1896O14.1->chr1:144676874-144679969:-,RP11-353N4.1->chr1:149590752-149591762:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.1214	TRUE	361	258	24	38	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	26	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.265	0.0102	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.2752	FALSE	499	1288	110	792	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXW11--RP11-387D10.2	21	2	FBXW11	1416	chr5:171433462:-	RP11-387D10.2	30323	chr15:91184489:-	ONLY_REF_SPLICE	YES	33	0	0.41	1	0.2141	0.0204	FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,RP11-387D10.2->chr15:91163239-91260372:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	1	0.2345	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	20	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	11	1	0.66	0.2039	0.0102	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.66	1	0.2141	TRUE	347	1186	183	220	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXW11--RP11-387D10.2	16	4	FBXW11	3708	chr5:171423894:-	RP11-387D10.2	30323	chr15:91184489:-	ONLY_REF_SPLICE	YES	38	0	0.34	1	0.1631	0.0408	FBXW11->F-box_and_WD_repeat_domain_containing_11,chr5:171288553-171433877:-,RP11-387D10.2->chr15:91163239-91260372:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.34	1	0.2039	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLTC--VMP1	2	55	CLTC	31229	chr17:57768072:+	VMP1	38263	chr17:57784888:+	ONLY_REF_SPLICE	YES	117	0	0.33	1	0.0204	0.5607	{Klijn_CCL:Urinary_Bladder=1},NEIGHBORS[10882],CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.5811	FALSE	0	0	0	2	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	15	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1529	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1529	TRUE	0	16	0	53	13	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	12	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.1223	0.0204	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1427	FALSE	499	1288	110	792	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	11	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1698	0	0.01	1	0.1121	0.0306	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1427	FALSE	13	9	0	364	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0917	0.1019	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.1936	FALSE	499	1288	110	792	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	10	2	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.1019	0.0204	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	0.1223	TRUE	67	49	0	25	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	7	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	41	15	0.33	0.57	0.0714	0.1325	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.57	0.2039	TRUE	267	562	48	632	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	9	2	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1716	0	0.01	1	0.0917	0.0204	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.1121	FALSE	13	9	0	364	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VSIG10--TAOK3	8	3	VSIG10	2578	chr12:118564286:-	TAOK3	43222	chr12:118651915:-	ONLY_REF_SPLICE	YES	3	24	0.79	0.31	0.0816	0.0306	LOCAL_REARRANGEMENT:-:[13775],VSIG10->V-set_and_immunoglobulin_domain_containing_10,chr12:118501398-118573831:-,TAOK3->TAO_kinase_3,chr12:118587606-118810750:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.79	0.1122	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTR3C--RP11-728K20.1	8	1	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	9	0	0.5	1	0.0816	0.0102	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.0918	TRUE	0	5	0	16	1	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EFTUD2--IFIH1	4	12	EFTUD2	3961	chr17:42971785:-	IFIH1	50274	chr2:163124671:-	INCL_NON_REF_SPLICE	YES	192	14	0.08	0.53	0.0408	0.1223	EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.53	0.1631	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0612	0.0408	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.102	FALSE	462	80	0	856	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0408	0.1019	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1427	FALSE	499	1288	110	792	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	4	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	36	15	0.27	0.46	0.0408	0.0917	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.46	0.1325	TRUE	267	562	48	632	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	13	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.0306	0.1325	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	0.1631	FALSE	499	1288	110	792	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPL5	6	0	EIF1	1086	chr17:39845222:+	RPL5	7800	chr1:93297597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0612	0	EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPL5->chr1:93297582-93307481:+,ribosomal_protein_L5	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0612	TRUE	0	0	0	39	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	5	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.051	0.0204	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0714	TRUE	477	1352	189	275	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	4	1	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	1	2	0.83	0.71	0.0408	0.0102	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	0.83	0.051	TRUE	0	48	0	65	48	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ENTPD5--RP11-662J14.1	4	1	ENTPD5	4093	chr14:74477794:-	RP11-662J14.1	32208	chr14:40855456:+	ONLY_REF_SPLICE	YES	8	0	0.38	1	0.0408	0.0102	ENTPD5->chr14:74424713-74486102:-,ectonucleoside_triphosphate_diphosphohydrolase_5,RP11-662J14.1->chr14:40855456-40855998:+	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.051	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	4	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0.0408	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0714	FALSE	462	80	0	856	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-563J2.2--PFKFB3	4	0	RP11-563J2.2	6748	chr10:6373565:+	PFKFB3	15223	chr10:6255586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0408	0	LOCAL_REARRANGEMENT:+:[42155],RP11-563J2.2->chr10:6319650-6377944:+,PFKFB3->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_3,chr10:6186881-6277495:+	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PVT1--MYC	3	2	PVT1	1202	chr8:128806980:+	MYC	30642	chr8:128750494:+	ONLY_REF_SPLICE	YES	31	73	0.14	0.06	0.0306	0.0204	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[53105],PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MYC->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr8:128747680-128753674:+,v-myc_avian_myelocytomatosis_viral_oncogene_homolog	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.14	0.051	TRUE	3	14	0	24	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EFTUD2--IFIH1	2	5	EFTUD2	3961	chr17:42971785:-	IFIH1	50866	chr2:163124079:-	ONLY_REF_SPLICE	YES	192	29	0.04	0.19	0.0204	0.051	EFTUD2->chr17:42927311-42977030:-,elongation_factor_Tu_GTP_binding_domain_containing_2,IFIH1->chr2:163123589-163175213:-,interferon_induced_with_helicase_C_domain_1	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.19	0.0714	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLR2L--CHID1	3	1	POLR2L	1132	chr11:842414:-	CHID1	23962	chr11:870499:-	ONLY_REF_SPLICE	YES	102	31	0.04	0.11	0.0306	0.0102	LOCAL_REARRANGEMENT:-:[24812],POLR2L->chr11:837356-842545:-,polymerase_(RNA)_II_subunit_L,CHID1->chitinase_domain_containing_1,chr11:867357-915058:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.11	0.0408	TRUE	0	0	0	1	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTR3C--RP11-728K20.1	3	0	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	19906	chr7:149588390:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0306	0	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0306	TRUE	3	46	4	12	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0306	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0306	FALSE	462	80	0	856	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	2	2	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0.0204	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	274	363	69	150	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DEPDC1B--PDE4D	2	1	DEPDC1B	13730	chr5:59899218:-	PDE4D	27733	chr5:59481514:-	ONLY_REF_SPLICE	YES	53	0	0.05	1	0.0204	0.0102	{Klijn_CCL:Ovary=1},NEIGHBORS[74792],DEPDC1B->DEP_domain_containing_1B,chr5:59892739-59996017:-,PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.0306	FALSE	0	0	0	1	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAPN15--NOC4L	2	0	CAPN15	2366	chr16:583998:+	NOC4L	24151	chr12:132635526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	GTEx_v2:{count=2;pct=0.02%;dist=Esophagus_-_Mucosa=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},CAPN15->calpain_15,chr16:577717-604636:+,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	6	0	4	3	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CAPZA2--UBB	2	0	CAPZA2	3371	chr7:116502704:+	UBB	26491	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+,UBB->chr17:16284112-16286059:+,ubiquitin_B	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	5	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-319G9.5--WWOX	2	0	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	FALSE	154	425	28	76	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-440L14.1--CTBP1	2	0	RP11-440L14.1	1078	chr4:775560:-	CTBP1	11273	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	RP11-440L14.1->chr4:756175-775637:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	2	0	7	2	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-563J2.2--PFKFB3	2	0	RP11-563J2.2	2218	chr10:6368605:+	PFKFB3	15223	chr10:6255586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_REARRANGEMENT:+:[42155],RP11-563J2.2->chr10:6319650-6377944:+,PFKFB3->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_3,chr10:6186881-6277495:+	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-563J2.2--PFKFB3	2	0	RP11-563J2.2	6451	chr10:6373268:+	PFKFB3	15223	chr10:6255586:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0204	0	LOCAL_REARRANGEMENT:+:[42155],RP11-563J2.2->chr10:6319650-6377944:+,PFKFB3->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_3,chr10:6186881-6277495:+	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	TRUE	0	0	0	1	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	1	3	LINC00299	17125	chr2:8200478:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0102	0.0306	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0408	TRUE	20	19	0	15	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBE1	1	1	AC104389.28	2337	chr11:5368106:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	1	2	0.67	0.5	0.0102	0.0102	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.67	0.0204	TRUE	0	0	0	9	0	TRUE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS3--UBB	1	1	RPS3	2292	chr11:75111821:+	UBB	14087	chr17:16285216:+	ONLY_REF_SPLICE	YES	2925	312	0	0.01	0.0102	0.0102	RPS3->chr11:75110530-75133324:+,ribosomal_protein_S3,UBB->chr17:16284112-16286059:+,ubiquitin_B	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0204	FALSE	0	0	0	6	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	11	0	0.15	1	0.0102	0.0102	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.15	1	0.0204	FALSE	272	151	14	158	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZBED3-AS1--PDE8B	1	1	ZBED3-AS1	10441	chr5:76414346:+	PDE8B	29102	chr5:76621364:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0102	0.0102	NEIGHBORS[43540],ZBED3-AS1->ZBED3_antisense_RNA_1,chr5:76382565-76462734:+,PDE8B->chr5:76506274-76725632:+,phosphodiesterase_8B	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	FALSE	3	2	0	1	0	FALSE	ACH-000233
DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZBED3-AS1--PDE8B	1	1	ZBED3-AS1	10441	chr5:76414346:+	PDE8B	28042	chr5:76607819:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0102	0.0102	NEIGHBORS[43540],ZBED3-AS1->ZBED3_antisense_RNA_1,chr5:76382565-76462734:+,PDE8B->chr5:76506274-76725632:+,phosphodiesterase_8B	DEL_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0204	FALSE	4	0	0	2	0	FALSE	ACH-000233
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--IL27RA	465	321	CDC37	6181	chr19:10505697:-	IL27RA	15925	chr19:14153265:+	ONLY_REF_SPLICE	YES	1821	33	0.3	0.96	5.1127	3.5294	{Klijn_CCL:Lymphoid=1},CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,IL27RA->chr19:14142560-14163743:+,interleukin_27_receptor_subunit_alpha	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.96	8.6421	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRPC4AP--ACSBG2	249	282	TRPC4AP	9141	chr20:33622926:-	ACSBG2	40906	chr19:6190595:+	ONLY_REF_SPLICE	YES	398	1	0.57	1	2.7378	3.1006	{Klijn_CCL:Lymphoid=1},TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,ACSBG2->acyl-CoA_synthetase_bubblegum_family_member_2,chr19:6135258-6193112:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.57	1	5.8384	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRPC4AP--ACSBG2	249	182	TRPC4AP	9141	chr20:33622926:-	ACSBG2	42015	chr19:6192679:+	ONLY_REF_SPLICE	YES	398	20	0.52	0.96	2.7378	2.0011	{Klijn_CCL:Lymphoid=1},TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,ACSBG2->acyl-CoA_synthetase_bubblegum_family_member_2,chr19:6135258-6193112:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.52	0.96	4.7389	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FREM1--MPDZ	80	52	FREM1	12959	chr9:14841445:-	MPDZ	74828	chr9:13162794:-	ONLY_REF_SPLICE	YES	688	0	0.16	1	0.8796	0.5717	FREM1->FRAS1_related_extracellular_matrix_1,chr9:14734664-14910993:-,MPDZ->chr9:13105703-13279589:-,multiple_PDZ_domain_crumbs_cell_polarity_complex_component	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	1.4513	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	74	40	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.8136	0.4398	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.2534	TRUE	508	994	45	981	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ITCH--CATSPERD	59	43	ITCH	3377	chr20:32981687:+	CATSPERD	36429	chr19:5727279:+	ONLY_REF_SPLICE	YES	164	0	0.38	1	0.6487	0.4728	ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase,CATSPERD->cation_channel_sperm_associated_auxiliary_subunit_delta,chr19:5720688-5778745:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	1.1215	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTI1--TRPC4AP	39	26	TTI1	11775	chr20:36624777:-	TRPC4AP	17667	chr20:33665977:-	ONLY_REF_SPLICE	YES	97	228	0.4	0.22	0.4288	0.2859	TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-,TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.4	0.7147	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	41	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	335	10	0.12	0.82	0.4508	0.055	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.82	0.5058	TRUE	519	3926	326	965	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	30	0	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3299	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3299	FALSE	499	1288	110	792	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	29	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3189	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3189	TRUE	0	0	0	518	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	21	29	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	256	27	0.16	0.65	0.2309	0.3189	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.65	0.5498	TRUE	267	562	48	632	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RALGAPB--AP1M2	20	15	RALGAPB	15862	chr20:37161502:+	AP1M2	44552	chr19:10694746:-	ONLY_REF_SPLICE	YES	106	3	0.25	0.92	0.2199	0.1649	RALGAPB->Ral_GTPase_activating_protein_non-catalytic_beta_subunit,chr20:37101459-37207504:+,AP1M2->adaptor_related_protein_complex_1_mu_2_subunit,chr19:10683347-10697991:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.25	0.92	0.3848	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	23	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2529	0.011	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2639	FALSE	462	80	0	856	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	23	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2529	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2529	FALSE	499	1288	110	792	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	23	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2529	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2529	TRUE	46	1352	75	139	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	20	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2199	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2199	TRUE	0	0	0	434	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	15	16	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	25	1064	0.55	0.03	0.1649	0.1759	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.55	0.3408	FALSE	0	0	0	19	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SAMSN1--AF165138.7	13	17	SAMSN1	7882	chr21:15884765:-	AF165138.7	22640	chr21:15981889:-	ONLY_REF_SPLICE	YES	2869	11	0.01	0.73	0.1429	0.1869	LOCAL_REARRANGEMENT:-:[8528],SAMSN1->SAM_domain,_SH3_domain_and_nuclear_localization_signals_1,chr21:15857549-15955723:-,AF165138.7->chr21:15964251-16031142:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.73	0.3298	TRUE	0	0	0	1	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	15	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1649	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1649	FALSE	499	1288	110	792	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	9	20	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	252	28	0.1	0.51	0.099	0.2199	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.51	0.3189	TRUE	267	562	48	632	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	7	26	AC104820.2	16783	chr2:182227645:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	25	604	0.57	0.05	0.077	0.2859	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.57	0.3629	FALSE	0	0	0	16	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000525.9--LA16c-60G3.6	13	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	5	0	0.74	1	0.1429	0.011	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	0.1539	TRUE	0	42	0	133	42	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTF2--DR1	11	8	MTF2	9012	chr1:93586229:+	DR1	24972	chr1:93826050:+	ONLY_REF_SPLICE	YES	311	572	0.06	0.03	0.1209	0.088	MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2,DR1->chr1:93811445-93835055:+,down-regulator_of_transcription_1	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.06	0.2089	TRUE	0	0	0	2	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DCAF16--ASH2L	10	0	DCAF16	7336	chr4:17802847:-	ASH2L	25758	chr8:37995169:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.11	0	DCAF16->DDB1_and_CUL4_associated_factor_16,chr4:17802278-17812381:-,ASH2L->ash2_(absent,_small,_or_homeotic)-like_(Drosophila),chr8:37962760-38001594:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	6	15	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.066	0.1649	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2309	TRUE	13	49	2	38	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	9	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.83	1	0.099	0.011	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.83	1	0.11	FALSE	292	1546	117	613	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CASC4--EIF3J	8	4	CASC4	6085	chr15:44620985:+	EIF3J	25545	chr15:44829522:+	ONLY_REF_SPLICE	YES	56	197	0.18	0.06	0.088	0.044	CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+,EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.18	0.132	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	6	6	AC104820.2	6553	chr2:182091262:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	68	1064	0.15	0.01	0.066	0.066	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.15	0.132	FALSE	0	1	0	18	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CASC4--EIF3J	6	5	CASC4	7176	chr15:44624276:+	EIF3J	25545	chr15:44829522:+	ONLY_REF_SPLICE	YES	59	197	0.16	0.05	0.066	0.055	CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+,EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.16	0.121	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	5	9	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	5	0	0.74	1	0.055	0.099	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.74	1	0.154	FALSE	16	356	14	466	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTDC1--ZEB2	7	0	GTDC1	1130	chr2:145090006:-	ZEB2	54064	chr2:145187593:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.077	0	GTEx_FI:{Brain=[count:6=pct:0.9],Blood_Vessel=[count:3=pct:0.8],Adipose_Tissue=[count:1=pct:0.3],Breast=[count:1=pct:0.9]},GTEx_v2:{count=5;pct=0.06%;dist=Artery_-_Tibial=1,Brain_-_Frontal_Cortex_(BA9)=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_REARRANGEMENT:-:[51513],GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1,ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.077	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	0	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.077	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.077	FALSE	189	492	56	216	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	6	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	46	1	0.16	0.066	0.033	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.099	TRUE	465	1949	224	605	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-680G10.1--GSE1	5	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	12	1	0.48	0.055	0.066	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.48	1	0.121	TRUE	458	1351	185	561	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	0	MT-CO3	1138	chrM:9344:+	MT-ATP6	5448	chrM:9190:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.066	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.066	FALSE	189	492	56	216	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	6	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.066	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.066	FALSE	189	492	56	216	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	6	0	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.066	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.066	FALSE	499	1288	110	792	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RALGAPB--AP1M2	2	15	RALGAPB	15862	chr20:37161502:+	AP1M2	43578	chr19:10695720:-	ONLY_REF_SPLICE	YES	106	2	0.14	0.89	0.022	0.1649	RALGAPB->Ral_GTPase_activating_protein_non-catalytic_beta_subunit,chr20:37101459-37207504:+,AP1M2->adaptor_related_protein_complex_1_mu_2_subunit,chr19:10683347-10697991:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	0.89	0.1869	TRUE	0	0	0	2	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	5	2	AC131097.3	2273	chr2:242824786:+	AC093642.5	12811	chr2:243056790:+	ONLY_REF_SPLICE	YES	2	27	0.78	0.21	0.055	0.022	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.78	0.077	FALSE	2	37	1	16	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	3	9	AC104820.2	6553	chr2:182091262:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	68	604	0.15	0.02	0.033	0.099	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.15	0.132	FALSE	0	0	0	11	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	1	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	10	5	0.38	0.55	0.055	0.011	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.55	0.066	FALSE	189	492	56	216	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	1	MT-CO3	1096	chrM:9302:+	MT-ATP6	5325	chrM:9067:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.6	0.055	0.011	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.066	FALSE	189	492	56	216	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	4	5	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	8873	chr5:97235342:+	INCL_NON_REF_SPLICE	YES	0	4	1	0.69	0.044	0.055	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.69	1	0.099	TRUE	0	1	0	5	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC37--IL27RA	1	16	CDC37	6181	chr19:10505697:-	IL27RA	17262	chr19:14156966:+	ONLY_REF_SPLICE	YES	1821	177	0.01	0.09	0.011	0.1759	{Klijn_CCL:Lymphoid=1},CDC37->cell_division_cycle_37,chr19:10501810-10530797:-,IL27RA->chr19:14142560-14163743:+,interleukin_27_receptor_subunit_alpha	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.09	0.1869	TRUE	0	0	0	1	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	5	0	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.055	FALSE	189	492	56	216	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.055	FALSE	462	80	0	856	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSPC1--DACH1	4	4	PSPC1	7403	chr13:20304379:-	DACH1	19883	chr13:72256042:-	ONLY_REF_SPLICE	YES	391	1	0.02	0.89	0.044	0.044	PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,DACH1->chr13:72012098-72441330:-,dachshund_family_transcription_factor_1	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.89	0.088	TRUE	0	0	0	2	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SAMSN1--AF165138.7	3	7	SAMSN1	6752	chr21:15889213:-	AF165138.7	20190	chr21:15988337:-	ONLY_REF_SPLICE	YES	2232	4	0	0.71	0.033	0.077	LOCAL_REARRANGEMENT:-:[8528],SAMSN1->SAM_domain,_SH3_domain_and_nuclear_localization_signals_1,chr21:15857549-15955723:-,AF165138.7->chr21:15964251-16031142:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.71	0.11	TRUE	0	0	0	1	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	1	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	0	5	1	0.5	0.044	0.011	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.055	FALSE	189	492	56	216	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OXR1--RSPO2	4	1	OXR1	1123	chr8:107282595:+	RSPO2	38990	chr8:109001472:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.044	0.011	OXR1->chr8:107282473-107764922:+,oxidation_resistance_1,RSPO2->Oncogene{Bushman},R-spondin_2,chr8:108911544-109095913:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.055	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	58	0	0.13	1	0.022	0.077	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.13	1	0.099	FALSE	164	806	69	479	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	1	MT-CO3	1136	chrM:9342:+	MT-ATP6	5209	chrM:8951:+	INCL_NON_REF_SPLICE	YES	8	51	0.33	0.07	0.033	0.011	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.33	0.044	FALSE	189	492	56	216	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	1	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	0	15	1	0.21	0.033	0.011	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	1	0.044	FALSE	189	492	56	216	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	1	MT-CO3	1075	chrM:9281:+	MT-ATP6	5233	chrM:8975:+	INCL_NON_REF_SPLICE	YES	0	10	1	0.29	0.033	0.011	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.044	FALSE	189	492	56	216	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	1	MT-ND6	1048	chrM:14626:-	MT-TE	4524	chrM:14744:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0.011	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.044	FALSE	499	1288	110	792	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2337A12.1--CAST	3	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.033	TRUE	347	1186	183	220	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FARS2--RP3-380B8.4	3	0	FARS2	9557	chr6:5613553:+	RP3-380B8.4	15479	chr6:5870274:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.033	0	NEIGHBORS[79926],FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial,RP3-380B8.4->chr6:5851739-5870453:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.033	FALSE	27	82	4	18	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.033	FALSE	189	492	56	216	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1194	chrM:9400:+	MT-ATP6	5459	chrM:9201:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.033	FALSE	189	492	56	216	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1005	chrM:9211:+	MT-ATP6	5285	chrM:9027:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.033	FALSE	189	492	56	216	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND3--MT-ATP8	3	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.033	FALSE	351	233	23	137	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.033	FALSE	499	1288	110	792	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.033	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.033	FALSE	499	1288	110	792	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R16B--RP5-1043L13.1	2	4	PPP1R16B	2439	chr20:37464818:+	RP5-1043L13.1	23363	chr20:58675226:+	ONLY_REF_SPLICE	YES	21	0	0.22	1	0.022	0.044	PPP1R16B->Oncogene{Bushman},chr20:37434348-37551667:+,protein_phosphatase_1_regulatory_subunit_16B,RP5-1043L13.1->chr20:58662895-59102516:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	1	0.066	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NRIP1--AF127936.7	2	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	35	0	0.12	1	0.022	0.033	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.055	FALSE	125	705	46	456	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KCNQ5-IT1--KCNQ5	2	2	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	45	1	0.08	0.022	0.022	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.044	FALSE	1	11	0	34	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FUBP1--IVNS1ABP	2	1	FUBP1	14090	chr1:78414840:-	IVNS1ABP	28428	chr1:185274775:-	ONLY_REF_SPLICE	YES	395	540	0.01	0.01	0.022	0.011	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Brain=[count:2=pct:0.3]},GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},{Klijn_CCL:Head-Neck=1,Lung=1,Lymphoid=1},FUBP1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:78409740-78444794:-,far_upstream_element_binding_protein_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.033	FALSE	1	4	0	16	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYO3B--UBR3	2	1	MYO3B	10164	chr2:171225887:+	UBR3	82701	chr2:170885856:+	ONLY_REF_SPLICE	YES	121	266	0.02	0.01	0.022	0.011	LOCAL_REARRANGEMENT:+:[94014],MYO3B->chr2:171034655-171511681:+,myosin_IIIB,UBR3->chr2:170683968-170940641:+,ubiquitin_protein_ligase_E3_component_n-recognin_3_(putative)	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.033	FALSE	0	0	0	2	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PSPC1--DACH1	1	5	PSPC1	9631	chr13:20279802:-	DACH1	19883	chr13:72256042:-	ONLY_REF_SPLICE	YES	432	1	0.01	0.86	0.011	0.055	PSPC1->chr13:20248896-20357142:-,paraspeckle_component_1,DACH1->chr13:72012098-72441330:-,dachshund_family_transcription_factor_1	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.86	0.066	FALSE	0	0	0	1	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNHG5--ITGB3BP	2	1	SNHG5	1780	chr6:86387672:-	ITGB3BP	20532	chr1:63920639:-	ONLY_REF_SPLICE	YES	3537	381	0	0.01	0.022	0.011	SNHG5->chr6:86370710-86388451:-,small_nucleolar_RNA_host_gene_5,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.033	FALSE	0	0	0	3	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TRPC4AP--ACSBG2	1	5	TRPC4AP	6747	chr20:33637669:-	ACSBG2	42015	chr19:6192679:+	ONLY_REF_SPLICE	YES	868	20	0.01	0.23	0.011	0.055	{Klijn_CCL:Lymphoid=1},TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein,ACSBG2->acyl-CoA_synthetase_bubblegum_family_member_2,chr19:6135258-6193112:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.23	0.066	FALSE	0	0	0	2	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AGPAT5--DCBLD1	2	0	AGPAT5	5462	chr8:6590171:+	DCBLD1	42973	chr6:117890783:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	AGPAT5->1-acylglycerol-3-phosphate_O-acyltransferase_5,chr8:6565878-6617184:+,DCBLD1->chr6:117774980-117891021:+,discoidin,_CUB_and_LCCL_domain_containing_1	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP000275.65--NDUFAF7	2	0	AP000275.65	2345	chr21:33982148:-	NDUFAF7	13288	chr2:37463239:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	AP000275.65->chr21:33951132-33984591:-,NDUFAF7->NADH:ubiquinone_oxidoreductase_complex_assembly_factor_7,chr2:37458774-37480546:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CACNA1C-AS1--ANKLE2	2	0	CACNA1C-AS1	1394	chr12:2799973:-	ANKLE2	30668	chr12:133306856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	CACNA1C-AS1->CACNA1C_antisense_RNA_1,chr12:2785167-2800366:-,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DANCR--PTCD3	2	0	DANCR	1530	chr4:53579126:+	PTCD3	27586	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEA1--TMPO	2	0	EEA1	25711	chr12:93192668:-	TMPO	44219	chr12:98921664:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	EEA1->chr12:93164413-93323107:-,early_endosome_antigen_1,TMPO->chr12:98909290-98944157:+,thymopoietin	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GTPBP4--LARP4B	2	0	GTPBP4	1130	chr10:1034467:+	LARP4B	32244	chr10:889008:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_INVERSION:+:-:[56774],GTPBP4->GTP_binding_protein_4,chr10:1034338-1065876:+,LARP4B->La_ribonucleoprotein_domain_family_member_4B,chr10:855484-977564:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HS2ST1--BAZ1A	2	0	HS2ST1	8180	chr1:87558352:+	BAZ1A	26550	chr14:35331528:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPD1--EEF1B2	2	0	HSPD1	10974	chr2:198353726:-	EEF1B2	18849	chr2:207026762:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	HSPD1->Oncogene{Bushman},chr2:198351305-198381461:-,heat_shock_protein_family_D_(Hsp60)_member_1,EEF1B2->chr2:207024309-207027652:+,eukaryotic_translation_elongation_factor_1_beta_2	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTERFD1--MPHOSPH8	2	0	MTERFD1	1110	chr8:97273729:-	MPHOSPH8	27524	chr13:20245346:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	MTERFD1->chr8:97251626-97273838:-,MPHOSPH8->M-phase_phosphoprotein_8,chr13:20207788-20247599:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFV3--U2AF1	2	0	NDUFV3	5809	chr21:44317157:+	U2AF1	26761	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Substantia_nigra=1},NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	5	0	8	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIK3C2A--COG4	2	0	PIK3C2A	23220	chr11:17135908:-	COG4	45398	chr16:70551643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PIK3C2A->chr11:17099277-17229530:-,phosphatidylinositol-4-phosphate_3-kinase_catalytic_subunit_type_2_alpha,COG4->chr16:70514471-70557468:-,component_of_oligomeric_golgi_complex_4	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PMS2P10--WRN	2	0	PMS2P10	3697	chr7:74925018:-	WRN	34437	chr8:30998946:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PMS2P10->PMS1_homolog_2,_mismatch_repair_system_component_pseudogene_10,chr7:74916804-74928928:-,WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PROSC--EZH2	2	0	PROSC	2996	chr8:37623873:+	EZH2	26579	chr7:148512638:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-299J3.8--MTMR2	2	0	RP11-299J3.8	1044	chr3:122135097:+	MTMR2	28926	chr11:95574873:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RP11-299J3.8->chr3:122135054-122162027:+,MTMR2->chr11:95566046-95658479:-,myotubularin_related_protein_2	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS9--SNRNP70	2	0	RPS9	1868	chr19:54705477:+	SNRNP70	22008	chr19:49610882:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	RPS9->chr19:54704610-54752862:+,ribosomal_protein_S9,SNRNP70->chr19:49588676-49611862:+,small_nuclear_ribonucleoprotein_U1_subunit_70	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLBP--WHSC1	2	0	SLBP	2787	chr4:1705323:-	WHSC1	17685	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	SLBP->chr4:1694527-1714282:-,stem-loop_binding_protein,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STUB1--RPL13A	2	0	STUB1	2380	chr16:731603:+	RPL13A	8668	chr19:49994036:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	STUB1->STIP1_homology_and_U-box_containing_protein_1,chr16:730224-732870:+,RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TTI1--TRPC4AP	2	0	TTI1	10196	chr20:36627590:-	TRPC4AP	24364	chr20:33623111:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.022	0	TTI1->TELO2_interacting_protein_1,chr20:36611409-36661870:-,TRPC4AP->chr20:33590207-33680674:-,transient_receptor_potential_cation_channel_subfamily_C_member_4_associated_protein	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC131097.3--AC093642.5	1	3	AC131097.3	2273	chr2:242824786:+	AC093642.5	11670	chr2:243037038:+	ONLY_REF_SPLICE	NO	2	10	0.67	0.29	0.011	0.033	NEIGHBORS[9911],AC131097.3->chr2:242823514-243020873:+,AC093642.5->chr2:243030784-243102304:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	0.67	0.044	FALSE	3	20	2	16	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C11orf73--PICALM	1	3	C11orf73	3558	chr11:86017524:+	PICALM	14527	chr11:85742653:-	ONLY_REF_SPLICE	NO	401	1046	0.01	0	0.011	0.033	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1},C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.044	FALSE	1	2	0	10	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RALGAPB--AP1M2	1	3	RALGAPB	15862	chr20:37161502:+	AP1M2	46063	chr19:10692554:-	ONLY_REF_SPLICE	YES	106	18	0.04	0.18	0.011	0.033	RALGAPB->Ral_GTPase_activating_protein_non-catalytic_beta_subunit,chr20:37101459-37207504:+,AP1M2->adaptor_related_protein_complex_1_mu_2_subunit,chr19:10683347-10697991:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.18	0.044	TRUE	0	0	0	1	0	TRUE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	1	3	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	2	1	0.67	0.011	0.033	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.044	FALSE	46	201	11	112	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF414--HNRNPM	1	3	ZNF414	4314	chr19:8575735:-	HNRNPM	10663	chr19:8527413:+	ONLY_REF_SPLICE	YES	0	1604	1	0	0.011	0.033	LOCAL_INVERSION:-:+:[21464],ZNF414->chr19:8575462-8579048:-,zinc_finger_protein_414,HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.044	FALSE	0	0	0	1	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CPSF6--RRP15	1	2	CPSF6	11046	chr12:69656342:+	RRP15	24741	chr1:218504290:+	ONLY_REF_SPLICE	YES	422	365	0.01	0.01	0.011	0.022	CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.033	FALSE	0	0	0	1	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FOXJ3--PSMB1	1	2	FOXJ3	15984	chr1:42654408:-	PSMB1	26920	chr6:170858201:-	ONLY_REF_SPLICE	YES	226	1686	0.01	0	0.011	0.022	FOXJ3->chr1:42642210-42801548:-,forkhead_box_J3,PSMB1->chr6:170844205-170862429:-,proteasome_subunit_beta_1	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.033	FALSE	0	0	0	1	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CASC4--EIF3J	1	1	CASC4	4982	chr15:44615217:+	EIF3J	25545	chr15:44829522:+	ONLY_REF_SPLICE	YES	42	197	0.05	0.01	0.011	0.011	CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+,EIF3J->chr15:44829255-44855227:+,eukaryotic_translation_initiation_factor_3_subunit_J	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FNTB--MAX	1	1	FNTB	4635	chr14:65453815:+	MAX	25444	chr14:65560533:-	ONLY_REF_SPLICE	YES	150	305	0.01	0.01	0.011	0.011	NEIGHBORS_OVERLAP:+:-:[56476],FNTB->chr14:65381203-65529368:+,farnesyltransferase,_CAAX_box,_beta,MAX->MYC_associated_factor_X,Oncogene{Bushman},chr14:65472892-65569413:-	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GOLGA4--LRRFIP2	1	1	GOLGA4	1446	chr3:37285113:+	LRRFIP2	49891	chr3:37190529:-	ONLY_REF_SPLICE	YES	44	61	0.04	0.03	0.011	0.011	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Heart=[count:3=pct:1.2],Skin=[count:2=pct:0.6],Colon=[count:1=pct:0.5],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=9;pct=0.10%;dist=Skin_-_Sun_Exposed_(Lower_leg)=2,Lung=1,Artery_-_Aorta=1,Esophagus_-_Mucosa=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Transverse=1},LOCAL_INVERSION:+:-:[59488],GOLGA4->chr3:37284668-37408242:+,golgin_A4,LRRFIP2->chr3:37094117-37225180:-,leucine_rich_repeat_(in_FLII)_interacting_protein_2	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.04	0.022	TRUE	1	0	0	1	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTF2--DR1	1	1	MTF2	7741	chr1:93584958:+	DR1	24972	chr1:93826050:+	ONLY_REF_SPLICE	YES	377	572	0.01	0	0.011	0.011	MTF2->chr1:93544792-93604638:+,metal_response_element_binding_transcription_factor_2,DR1->chr1:93811445-93835055:+,down-regulator_of_transcription_1	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.022	FALSE	0	0	0	2	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NUPL2--C1orf112	1	1	NUPL2	3987	chr7:23226765:+	C1orf112	37513	chr1:169806068:+	ONLY_REF_SPLICE	YES	192	123	0.01	0.02	0.011	0.011	NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2,C1orf112->chr1:169631245-169823221:+,chromosome_1_open_reading_frame_112	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS20--EIF4A1	1	1	RPS20	1451	chr8:56986619:-	EIF4A1	11345	chr17:7478437:+	ONLY_REF_SPLICE	NO	6118	3204	0	0	0.011	0.011	RPS20->chr8:56979854-56987069:-,ribosomal_protein_S20,EIF4A1->chr17:7476024-7482323:+,eukaryotic_translation_initiation_factor_4A1	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPS6--TUBE1	1	1	RPS6	2887	chr9:19378366:-	TUBE1	16901	chr6:112397712:-	ONLY_REF_SPLICE	NO	11856	123	0	0.02	0.011	0.011	RPS6->chr9:19375713-19380252:-,ribosomal_protein_S6,TUBE1->chr6:112391980-112408732:-,tubulin_epsilon_1	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TNFAIP8--HSD17B4	1	1	TNFAIP8	1216	chr5:118604602:+	HSD17B4	22456	chr5:118809603:+	ONLY_REF_SPLICE	YES	147	170	0.01	0.01	0.011	0.011	NEIGHBORS[52755],TNFAIP8->TNF_alpha_induced_protein_8,chr5:118604387-118735383:+,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.01	0.022	FALSE	0	2	0	7	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UBAP1--UBE2R2	1	1	UBAP1	1236	chr9:34179238:+	UBE2R2	16187	chr9:33886879:+	ONLY_REF_SPLICE	NO	123	97	0.02	0.02	0.011	0.011	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Muscle=[count:6=pct:2.6],Adipose_Tissue=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Heart=[count:1=pct:0.4]},GTEx_v2:{count=2;pct=0.02%;dist=Vagina=1,Muscle_-_Skeletal=1},UBAP1->chr9:34179003-34252521:+,ubiquitin_associated_protein_1,UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.022	TRUE	8	5	0	9	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP34--XPO1	1	1	USP34	2208	chr2:61647881:-	XPO1	80582	chr2:61761038:-	ONLY_REF_SPLICE	YES	145	805	0.01	0	0.011	0.011	LOCAL_REARRANGEMENT:-:[7080],USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34,XPO1->ArcherDX_panel,FoundationOne_panel,chr2:61704984-61765761:-,exportin_1	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000005
HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZEB2--GTDC1	1	1	ZEB2	5479	chr2:145274845:-	GTDC1	55949	chr2:144765102:-	ONLY_REF_SPLICE	NO	324	115	0.01	0.02	0.011	0.011	NEIGHBORS[51513],ZEB2->Oncogene{Bushman},chr2:145141648-145282147:-,zinc_finger_E-box_binding_homeobox_2,GTDC1->chr2:144695635-145090135:-,glycosyltransferase_like_domain_containing_1	HEL9217_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.022	FALSE	0	2	0	1	0	FALSE	ACH-000005
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CIITA--C15orf65	996	559	CIITA	4805	chr16:10992589:+	C15orf65	32427	chr15:55710421:+	ONLY_REF_SPLICE	YES	101	4	0.94	1	14.4905	8.1327	CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator,C15orf65->chr15:55700746-55710962:+,chromosome_15_open_reading_frame_65	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.94	1	22.6232	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CIITA--C15orf65	554	663	CIITA	4805	chr16:10992589:+	C15orf65	31902	chr15:55709896:+	ONLY_REF_SPLICE	YES	101	2	0.92	1	8.06	9.6458	CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator,C15orf65->chr15:55700746-55710962:+,chromosome_15_open_reading_frame_65	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	1	17.7058	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	172	49	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	2.5024	0.7129	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	3.2153	TRUE	508	994	45	981	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNRPD3--ADORA2A	154	99	SNRPD3	2713	chr22:24953768:+	ADORA2A	21557	chr22:24829099:+	ONLY_REF_SPLICE	YES	994	17	0.2	0.94	2.2405	1.4403	SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide,ADORA2A->adenosine_A2a_receptor,chr22:24813847-24838328:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.94	3.6808	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-113P19.1	169	7	G3BP1	1992	chr5:151151597:+	CTB-113P19.1	32398	chr5:151104126:+	ONLY_REF_SPLICE	YES	2	0	0.99	1	2.4587	0.1018	LOCAL_REARRANGEMENT:+:[46263],G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-113P19.1->chr5:151056506-151104343:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	2.5605	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRRC2B--MGMT	133	6	PRRC2B	1171	chr9:134269650:+	MGMT	42583	chr10:131334505:+	ONLY_REF_SPLICE	YES	4	0	0.97	1	1.935	0.0873	PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,MGMT->O-6-methylguanine-DNA_methyltransferase,chr10:131265448-131566271:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	2.0223	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CIITA--C15orf65	31	373	CIITA	3742	chr16:10989621:+	C15orf65	32427	chr15:55710421:+	ONLY_REF_SPLICE	YES	123	4	0.77	0.99	0.451	5.4267	CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator,C15orf65->chr15:55700746-55710962:+,chromosome_15_open_reading_frame_65	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.99	5.8777	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CIITA--C15orf65	8	443	CIITA	3742	chr16:10989621:+	C15orf65	31902	chr15:55709896:+	ONLY_REF_SPLICE	YES	123	2	0.79	1	0.1164	6.4451	CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator,C15orf65->chr15:55700746-55710962:+,chromosome_15_open_reading_frame_65	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	6.5615	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CIITA--C15orf65	67	204	CIITA	3406	chr16:10989285:+	C15orf65	32427	chr15:55710421:+	ONLY_REF_SPLICE	YES	453	4	0.37	0.99	0.9748	2.9679	CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator,C15orf65->chr15:55700746-55710962:+,chromosome_15_open_reading_frame_65	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.37	0.99	3.9427	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IARS--ECM2	99	65	IARS	13568	chr9:95030456:-	ECM2	39863	chr9:95285175:-	ONLY_REF_SPLICE	YES	448	0	0.27	1	1.4403	0.9457	IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase,ECM2->chr9:95256365-95298937:-,extracellular_matrix_protein_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	1	2.386	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GSE1--CFDP1	101	13	GSE1	2365	chr16:85647004:+	CFDP1	39558	chr16:75339080:-	ONLY_REF_SPLICE	YES	14	111	0.89	0.51	1.4694	0.1891	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,CFDP1->chr16:75327596-75467383:-,craniofacial_development_protein_1	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	0.89	1.6585	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-574K11.29	91	3	TIMM23	6952	chr10:51606988:-	RP11-574K11.29	13578	chr10:75473090:-	INCL_NON_REF_SPLICE	YES	135	8	0.41	0.92	1.3239	0.0436	GTEx_FI:{Testis=[count:1=pct:1.0],Esophagus=[count:1=pct:0.2]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-574K11.29->chr10:75463493-75473339:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.92	1.3675	TRUE	1	1	0	6	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNRPD3--ADORA2A	80	37	SNRPD3	2713	chr22:24953768:+	ADORA2A	23163	chr22:24836551:+	ONLY_REF_SPLICE	YES	994	332	0.11	0.26	1.1639	0.5383	SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide,ADORA2A->adenosine_A2a_receptor,chr22:24813847-24838328:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.26	1.7022	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBG1	64	77	AC104389.28	3440	chr11:5367003:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	120	8	0.54	0.95	0.9311	1.1202	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.54	0.95	2.0513	FALSE	0	0	0	7	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFAT5--CYB5B	65	55	NFAT5	3335	chr16:69602451:+	CYB5B	39636	chr16:69492996:+	ONLY_REF_SPLICE	YES	29	564	0.81	0.18	0.9457	0.8002	LOCAL_REARRANGEMENT:+:[98828],NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.81	1.7459	TRUE	0	1	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GSE1--CFDP1	65	45	GSE1	3584	chr16:85667738:+	CFDP1	39558	chr16:75339080:-	ONLY_REF_SPLICE	YES	81	111	0.58	0.5	0.9457	0.6547	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,CFDP1->chr16:75327596-75467383:-,craniofacial_development_protein_1	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.58	1.6004	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DBT--RP5-837M10.1	69	0	DBT	1065	chr1:100715326:-	RP5-837M10.1	24701	chr1:100797918:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0039	0	LOCAL_REARRANGEMENT:-:[81970],DBT->chr1:100652475-100715390:-,dihydrolipoamide_branched_chain_transacylase_E2,RP5-837M10.1->chr1:100797360-100798173:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0039	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CIITA--C15orf65	4	246	CIITA	3406	chr16:10989285:+	C15orf65	31902	chr15:55709896:+	ONLY_REF_SPLICE	YES	453	2	0.36	0.99	0.0582	3.579	CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator,C15orf65->chr15:55700746-55710962:+,chromosome_15_open_reading_frame_65	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.36	0.99	3.6372	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WASH5P--VPS18	55	34	WASH5P	3129	chr19:66346:-	VPS18	18300	chr15:41194814:+	ONLY_REF_SPLICE	YES	7	38	0.93	0.7	0.8002	0.4947	WASH5P->WAS_protein_family_homolog_5_pseudogene,chr19:60105-71626:-,VPS18->VPS18,_CORVET/HOPS_core_subunit,chr15:41186628-41196173:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.7	0.93	1.2949	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLEKHG1--MTHFD1L	52	11	PLEKHG1	3260	chr6:150971922:+	MTHFD1L	58525	chr6:151355629:+	ONLY_REF_SPLICE	YES	3	43	0.95	0.59	0.7565	0.16	NEIGHBORS[21886],PLEKHG1->chr6:150920999-151164799:+,pleckstrin_homology_and_RhoGEF_domain_containing_G1,MTHFD1L->chr6:151186685-151423023:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_1-like	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.59	0.95	0.9165	FALSE	0	2	0	1	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNRPD3--SPECC1L	46	32	SNRPD3	2713	chr22:24953768:+	SPECC1L	32776	chr22:24807556:+	ONLY_REF_SPLICE	YES	994	57	0.07	0.58	0.6692	0.4656	SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide,SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.58	1.1348	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1432--PDCD1LG2	48	20	KIAA1432	1429	chr9:5629453:+	PDCD1LG2	34935	chr9:5522533:+	ONLY_REF_SPLICE	YES	23	1	0.75	0.99	0.6983	0.291	LOCAL_REARRANGEMENT:+:[57743],KIAA1432->chr9:5629025-5776557:+,PDCD1LG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:5510545-5571282:+,programmed_cell_death_1_ligand_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	0.99	0.9893	TRUE	0	1	0	1	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DYNLT3--CYBB	47	22	DYNLT3	5812	chrX:37698668:-	CYBB	25678	chrX:37670464:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6838	0.3201	LOCAL_INVERSION:-:+:[23296],DYNLT3->chrX:37696010-37706890:-,dynein_light_chain_Tctex-type_3,CYBB->chrX:37639264-37672714:+,cytochrome_b-245,_beta_polypeptide	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.0039	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WASH5P--VPS18	35	54	WASH5P	3129	chr19:66346:-	VPS18	16931	chr15:41192844:+	INCL_NON_REF_SPLICE	YES	7	21	0.93	0.81	0.5092	0.7856	WASH5P->WAS_protein_family_homolog_5_pseudogene,chr19:60105-71626:-,VPS18->VPS18,_CORVET/HOPS_core_subunit,chr15:41186628-41196173:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.81	0.93	1.2948	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPTLC1--IARS	43	20	SPTLC1	14561	chr9:94808281:-	IARS	22723	chr9:95051708:-	ONLY_REF_SPLICE	YES	70	132	0.47	0.32	0.6256	0.291	LOCAL_REARRANGEMENT:-:[94823],SPTLC1->chr9:94794281-94877666:-,serine_palmitoyltransferase_long_chain_base_subunit_1,IARS->chr9:94972489-95056038:-,isoleucyl-tRNA_synthetase	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.47	0.9166	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	32	44	FAM222B	5825	chr17:27117396:-	FLOT2	21189	chr17:27211333:-	ONLY_REF_SPLICE	YES	4	171	0.95	0.31	0.4656	0.6401	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	0.95	1.1057	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AFF1--SBNO2	37	16	AFF1	3385	chr4:87869723:+	SBNO2	38710	chr19:1154401:-	ONLY_REF_SPLICE	YES	12	16	0.82	0.77	0.5383	0.2328	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,SBNO2->chr19:1107636-1174282:-,strawberry_notch_homolog_2_(Drosophila)	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.82	0.7711	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	41	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5965	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5965	TRUE	0	0	0	518	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	33	15	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	2	0	0.96	1	0.4801	0.2182	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.6983	TRUE	1	1	0	28	1	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFAT5--CYB5B	25	43	NFAT5	2281	chr16:69600277:+	CYB5B	39636	chr16:69492996:+	ONLY_REF_SPLICE	YES	31	564	0.69	0.11	0.3637	0.6256	LOCAL_REARRANGEMENT:+:[98828],NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.69	0.9893	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-344E13.3--UBBP4	23	49	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	148	1	0.33	0.99	0.3346	0.7129	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.99	1.0475	TRUE	23	13	0	54	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	29	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4219	0.0436	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.4655	FALSE	462	80	0	856	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104389.28--HBG1	29	1	AC104389.28	1084	chr11:5526799:-	HBG1	11958	chr11:5270820:-	ONLY_REF_SPLICE	YES	0	8	1	0.79	0.4219	0.0145	NEIGHBORS[55084],AC104389.28->chr11:5326206-5526882:-,HBG1->chr11:5269313-5271122:-,hemoglobin_subunit_gamma_1	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.79	1	0.4364	FALSE	0	1	0	13	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	21	31	FAM222B	4726	chr17:27139227:-	FLOT2	21189	chr17:27211333:-	ONLY_REF_SPLICE	YES	5	171	0.91	0.23	0.3055	0.451	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	0.91	0.7565	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PACS1--TSGA10IP	27	6	PACS1	1480	chr11:65838313:+	TSGA10IP	36159	chr11:65726354:+	ONLY_REF_SPLICE	YES	32	0	0.51	1	0.3928	0.0873	PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1,TSGA10IP->chr11:65712916-65727434:+,testis_specific_10_interacting_protein	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.51	1	0.4801	TRUE	0	1	0	1	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HERC1--ADAM12	26	2	HERC1	52875	chr15:63950743:-	ADAM12	89984	chr10:127967557:-	ONLY_REF_SPLICE	YES	53	0	0.35	1	0.3783	0.0291	HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-,ADAM12->ADAM_metallopeptidase_domain_12,Oncogene{Bushman},chr10:127700950-128077024:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	1	0.4074	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNRF1--GPT2	21	14	ZNRF1	2066	chr16:75033993:+	GPT2	23806	chr16:46940754:+	ONLY_REF_SPLICE	YES	75	44	0.32	0.44	0.3055	0.2037	ZNRF1->chr16:75032928-75144892:+,zinc_and_ring_finger_1,_E3_ubiquitin_protein_ligase,GPT2->chr16:46918290-46965209:+,glutamic_pyruvate_transaminase_(alanine_aminotransferase)_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.44	0.5092	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TP53BP1--PPIP5K1	22	3	TP53BP1	14389	chr15:43748015:-	PPIP5K1	61786	chr15:43825824:-	INCL_NON_REF_SPLICE	NO	47	3	0.35	0.89	0.3201	0.0436	LOCAL_REARRANGEMENT:-:[22734],TP53BP1->chr15:43699407-43802926:-,tumor_protein_p53_binding_protein_1,PPIP5K1->chr15:43825660-43882430:-,diphosphoinositol_pentakisphosphate_kinase_1	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.35	0.89	0.3637	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--STX18-AS1	20	8	FAM208B	1338	chr10:5727138:+	STX18-AS1	41145	chr4:4650704:+	ONLY_REF_SPLICE	YES	11	3	0.72	0.9	0.291	0.1164	FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.72	0.9	0.4074	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CIITA--C15orf65	1	80	CIITA	1185	chr16:10971239:+	C15orf65	32427	chr15:55710421:+	ONLY_REF_SPLICE	YES	808	4	0.09	0.95	0.0145	1.1639	CIITA->Oncogene{Bushman},chr16:10971055-11026079:+,class_II,_major_histocompatibility_complex,_transactivator,C15orf65->chr15:55700746-55710962:+,chromosome_15_open_reading_frame_65	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.95	1.1784	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRPF6--TPD52L2	19	8	PRPF6	19235	chr20:62660844:+	TPD52L2	26707	chr20:62505021:+	ONLY_REF_SPLICE	YES	166	237	0.14	0.1	0.2764	0.1164	LOCAL_REARRANGEMENT:+:[89590],PRPF6->chr20:62612488-62664453:+,pre-mRNA_processing_factor_6,TPD52L2->chr20:62496596-62522898:+,tumor_protein_D52_like_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.14	0.3928	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	18	11	FAM222B	3499	chr17:27161311:-	FLOT2	21189	chr17:27211333:-	ONLY_REF_SPLICE	YES	0	171	1	0.14	0.2619	0.16	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.4219	TRUE	0	1	0	1	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-319G9.5--WWOX	19	5	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	15	1	0.62	0.2764	0.0727	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.3491	FALSE	154	425	28	76	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	17	7	FAM222B	2441	chr17:27169700:-	FLOT2	21189	chr17:27211333:-	ONLY_REF_SPLICE	YES	0	171	1	0.12	0.2473	0.1018	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	1	0.3491	TRUE	0	1	0	1	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PARL--ABCC5	17	7	PARL	8509	chr3:183558358:-	ABCC5	48312	chr3:183645231:-	ONLY_REF_SPLICE	YES	177	41	0.12	0.37	0.2473	0.1018	LOCAL_REARRANGEMENT:-:[35001],PARL->chr3:183547173-183602721:-,presenilin_associated_rhomboid_like,ABCC5->ATP_binding_cassette_subfamily_C_member_5,chr3:183637722-183735803:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.37	0.3491	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-1E3.1--RP11-455B3.1	17	6	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2473	0.0873	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3346	TRUE	13	49	2	38	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NFAT5--CYB5B	8	41	NFAT5	3335	chr16:69602451:+	CYB5B	41116	chr16:69496333:+	ONLY_REF_SPLICE	YES	29	579	0.63	0.08	0.1164	0.5965	LOCAL_REARRANGEMENT:+:[98828],NFAT5->Oncogene{Bushman},chr16:69598997-69738569:+,nuclear_factor_of_activated_T-cells_5,_tonicity-responsive,CYB5B->chr16:69458428-69500169:+,cytochrome_b5_type_B	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.63	0.7129	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IKBKB--DKK4	16	8	IKBKB	6556	chr8:42162793:+	DKK4	27826	chr8:42234690:-	INCL_NON_REF_SPLICE	YES	48	0	0.33	1	0.2328	0.1164	LOCAL_INVERSION:+:-:[41613],IKBKB->chr8:42128820-42189973:+,inhibitor_of_kappa_light_polypeptide_gene_enhancer_in_B-cells,_kinase_beta,DKK4->chr8:42231586-42234750:-,dickkopf_WNT_signaling_pathway_inhibitor_4	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	1	0.3492	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LMAN2--FAM193B	17	4	LMAN2	5644	chr5:176761285:-	FAM193B	16122	chr5:176965108:-	ONLY_REF_SPLICE	YES	342	52	0.06	0.29	0.2473	0.0582	LMAN2->chr5:176758563-176778853:-,lectin,_mannose_binding_2,FAM193B->chr5:176946789-176981542:-,family_with_sequence_similarity_193_member_B	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.29	0.3055	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCKAP1L--RP11-753H16.5	15	5	NCKAP1L	20503	chr12:54925609:+	RP11-753H16.5	33738	chr12:54860625:+	ONLY_REF_SPLICE	YES	102	0	0.16	1	0.2182	0.0727	LOCAL_REARRANGEMENT:+:[30726],NCKAP1L->NCK_associated_protein_1_like,chr12:54891495-54937726:+,RP11-753H16.5->chr12:54747576-54860769:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	1	0.2909	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTCH2--AGBL2	14	8	MTCH2	2598	chr11:47660251:-	AGBL2	17898	chr11:47735899:-	ONLY_REF_SPLICE	YES	173	6	0.11	0.79	0.2037	0.1164	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_REARRANGEMENT:-:[16968],MTCH2->chr11:47638867-47664175:-,mitochondrial_carrier_2,AGBL2->ATP/GTP_binding_protein-like_2,chr11:47681143-47736941:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.79	0.3201	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THADA--MBOAT2	14	7	THADA	15803	chr2:43793837:-	MBOAT2	67358	chr2:9028203:-	ONLY_REF_SPLICE	YES	22	59	0.49	0.26	0.2037	0.1018	THADA->Oncogene{Bushman},THADA,_armadillo_repeat_containing,chr2:43393800-43823185:-,MBOAT2->chr2:8992820-9143942:-,membrane_bound_O-acyltransferase_domain_containing_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.26	0.49	0.3055	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC41A3--PVRL3-AS1	15	0	SLC41A3	7256	chr3:125786790:-	PVRL3-AS1	32481	chr3:110612677:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2182	0	SLC41A3->chr3:125725198-125820404:-,solute_carrier_family_41_member_3,PVRL3-AS1->PVRL3_antisense_RNA_1,chr3:110612555-110790400:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2182	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-113P19.1	13	6	G3BP1	1988	chr5:151151593:+	CTB-113P19.1	32398	chr5:151104126:+	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1891	0.0873	LOCAL_REARRANGEMENT:+:[46263],G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-113P19.1->chr5:151056506-151104343:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.95	1	0.2764	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	10	13	RP11-120D5.1	5563	chrX:11056723:-	MID1	21297	chrX:10535643:-	INCL_NON_REF_SPLICE	YES	6	19	0.79	0.55	0.1455	0.1891	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.55	0.79	0.3346	FALSE	0	9	0	55	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	11	8	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	4	19	0.83	0.5	0.16	0.1164	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.83	0.2764	FALSE	16	356	14	466	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BBS12--IL21-AS1	11	5	BBS12	1183	chr4:123654039:+	IL21-AS1	10418	chr4:123541123:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.16	0.0727	LOCAL_REARRANGEMENT:+:[43546],BBS12->Bardet-Biedl_syndrome_12,chr4:123653857-123666098:+,IL21-AS1->IL21_antisense_RNA_1,chr4:123540138-123610311:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2327	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	11	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.16	0.0291	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1891	FALSE	499	1288	110	792	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDB1--FBXL13	10	5	DDB1	14205	chr11:61089067:-	FBXL13	47783	chr7:102553662:-	ONLY_REF_SPLICE	YES	333	0	0.04	1	0.1455	0.0727	DDB1->chr11:61066923-61110068:-,damage_specific_DNA_binding_protein_1,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.2182	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCP11L1--ASCC3	10	5	TCP11L1	8904	chr11:33080641:+	ASCC3	64693	chr6:100964203:-	ONLY_REF_SPLICE	YES	25	23	0.38	0.39	0.1455	0.0727	TCP11L1->chr11:33060963-33127489:+,t-complex_11_like_1,ASCC3->activating_signal_cointegrator_1_complex_subunit_3,chr6:100956070-101329248:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.39	0.2182	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	10	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1455	0.0291	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1746	FALSE	499	1288	110	792	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-316P17.2--RP5-1050E16.2	10	1	RP11-316P17.2	1338	chr9:92316903:+	RP5-1050E16.2	8236	chr9:92522698:+	ONLY_REF_SPLICE	YES	93	1	0.11	0.92	0.1455	0.0145	GTEx_FI:{Lung=[count:1=pct:0.6],Cervix_Uteri=[count:1=pct:12.5]},RP11-316P17.2->chr9:92316566-92334585:+,RP5-1050E16.2->chr9:92501142-92523200:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.92	0.16	TRUE	2	7	0	5	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	2	32	FAM222B	4777	chr17:27139176:-	FLOT2	21189	chr17:27211333:-	ONLY_REF_SPLICE	NO	5	171	0.87	0.17	0.0291	0.4656	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.87	0.4947	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	10	0	ZNF654	1688	chr3:88188941:+	HMGB2	12525	chr4:174253314:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1455	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1455	TRUE	0	0	0	518	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	9	3	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1309	0.0436	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1745	FALSE	499	1288	110	792	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWOX--VAT1L	9	1	WWOX	3910	chr16:78143732:+	VAT1L	34273	chr16:77850818:+	ONLY_REF_SPLICE	YES	75	21	0.12	0.32	0.1309	0.0145	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.32	0.1454	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DBF4--RUNDC3B	7	8	DBF4	10304	chr7:87530193:+	RUNDC3B	26213	chr7:87369107:+	ONLY_REF_SPLICE	YES	74	0	0.17	1	0.1018	0.1164	LOCAL_REARRANGEMENT:+:[43920],DBF4->DBF4_zinc_finger,chr7:87505531-87538856:+,RUNDC3B->RUN_domain_containing_3B,chr7:87256864-87461611:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.2182	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2L13--CECR2	7	7	BCL2L13	4107	chr22:18138598:+	CECR2	25472	chr22:17976435:+	ONLY_REF_SPLICE	YES	55	1	0.2	0.93	0.1018	0.1018	LOCAL_REARRANGEMENT:+:[73771],BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,CECR2->cat_eye_syndrome_chromosome_region,_candidate_2,chr22:17840837-18037850:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.93	0.2036	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	6	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.87	1	0.1018	0.0873	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.87	1	0.1891	FALSE	499	1288	110	792	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	21	MT-CO3	1716	chrM:9922:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.96	0.0436	0.3055	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.3491	FALSE	189	492	56	216	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LANCL3--DYNLT3	7	3	LANCL3	1875	chrX:37431696:+	DYNLT3	25568	chrX:37696612:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1018	0.0436	LANCL3->LanC_like_3,chrX:37430822-37543716:+,DYNLT3->chrX:37696010-37706890:-,dynein_light_chain_Tctex-type_3	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1454	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	19	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	1	2	0.96	0.92	0.0436	0.2764	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.92	0.96	0.32	FALSE	189	492	56	216	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	UTRN--GRM1	7	3	UTRN	49672	chr6:144864006:+	GRM1	94358	chr6:146480484:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1018	0.0436	UTRN->chr6:144606837-145174170:+,utrophin,GRM1->chr6:146348782-146758734:+,glutamate_metabotropic_receptor_1	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1454	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWOX--VAT1L	6	7	WWOX	6262	chr16:78149051:+	VAT1L	34273	chr16:77850818:+	ONLY_REF_SPLICE	YES	45	21	0.22	0.38	0.0873	0.1018	{Klijn_CCL:Lung=3,Lymphoid=1,Ovary=1},WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,VAT1L->chr16:77822427-78014004:+,vesicle_amine_transport_1-like	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.22	0.38	0.1891	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	7	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1018	0.0145	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1163	FALSE	141	264	50	91	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNRPD3--SPECC1L	4	13	SNRPD3	2713	chr22:24953768:+	SPECC1L	33836	chr22:24808616:+	ONLY_REF_SPLICE	YES	994	57	0.02	0.23	0.0582	0.1891	SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide,SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.23	0.2473	TRUE	0	0	0	1	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	7	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1018	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1018	FALSE	189	492	56	216	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	6	3	FAM222B	2441	chr17:27169700:-	FLOT2	22273	chr17:27210249:-	ONLY_REF_SPLICE	YES	0	185	1	0.05	0.0873	0.0436	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	1	0.1309	TRUE	0	1	0	1	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	6	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0873	0.0436	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1309	FALSE	462	80	0	856	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDC16--ZNF212	6	2	CDC16	13459	chr13:115024873:+	ZNF212	23563	chr7:148947250:+	ONLY_REF_SPLICE	YES	32	25	0.2	0.24	0.0873	0.0291	CDC16->cell_division_cycle_16,chr13:115000362-115038198:+,ZNF212->chr7:148936742-148952700:+,zinc_finger_protein_212	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.24	0.1164	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SNRPD3--SPECC1L	4	10	SNRPD3	2713	chr22:24953768:+	SPECC1L	34896	chr22:24810502:+	ONLY_REF_SPLICE	NO	994	66	0.01	0.17	0.0582	0.1455	SNRPD3->chr22:24951471-25005947:+,small_nuclear_ribonucleoprotein_D3_polypeptide,SPECC1L->chr22:24666786-24813708:+,sperm_antigen_with_calponin_homology_and_coiled-coil_domains_1-like	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.17	0.2037	TRUE	0	0	0	1	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	6	2	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	5	19	0.62	0.3	0.0873	0.0291	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.3	0.62	0.1164	TRUE	37	101	7	40	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPBP1--GRK5	6	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0873	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0873	TRUE	1	39	0	134	39	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRRC2B--MGMT	5	4	PRRC2B	1171	chr9:134269650:+	MGMT	47177	chr10:131506159:+	ONLY_REF_SPLICE	YES	4	40	0.69	0.18	0.0727	0.0582	PRRC2B->chr9:134269480-134375584:+,proline_rich_coiled-coil_2B,MGMT->O-6-methylguanine-DNA_methyltransferase,chr10:131265448-131566271:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.69	0.1309	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	6	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0873	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0873	TRUE	477	1352	189	275	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CEP112--APOH	5	3	CEP112	6307	chr17:64171162:-	APOH	45994	chr17:64225540:-	ONLY_REF_SPLICE	YES	5	0	0.62	1	0.0727	0.0436	LOCAL_REARRANGEMENT:-:[19949],CEP112->centrosomal_protein_112,chr17:63631656-64188202:-,APOH->apolipoprotein_H,chr17:64208151-64252643:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.1163	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	3	11	FAM222B	4726	chr17:27139227:-	FLOT2	22273	chr17:27210249:-	ONLY_REF_SPLICE	YES	5	185	0.74	0.07	0.0436	0.16	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.74	0.2036	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	5	3	LINC00299	11974	chr2:8427468:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	5	0	0.62	1	0.0727	0.0436	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.62	1	0.1163	TRUE	67	49	0	25	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LINC00299--AC007464.1	5	3	LINC00299	17125	chr2:8200478:-	AC007464.1	24876	chr2:8119457:-	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0727	0.0436	GTEx_FI:{Brain=[count:52=pct:7.9],Blood=[count:16=pct:9.2],Whole_Blood=[count:7=pct:5.3],Lung=[count:4=pct:2.4],Adrenal_Gland=[count:2=pct:2.4],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Heart=[count:1=pct:0.4]},LINC00299->chr2:8147901-8523751:-,long_intergenic_non-protein_coding_RNA_299,AC007464.1->chr2:8062556-8418214:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.1163	TRUE	20	19	0	15	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	2	14	FAM222B	5825	chr17:27117396:-	FLOT2	22273	chr17:27210249:-	ONLY_REF_SPLICE	YES	4	185	0.8	0.08	0.0291	0.2037	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	0.8	0.2328	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KIAA1432--PDCD1LG2	2	13	KIAA1432	1429	chr9:5629453:+	PDCD1LG2	36004	chr9:5534745:+	ONLY_REF_SPLICE	YES	23	5	0.39	0.75	0.0291	0.1891	LOCAL_REARRANGEMENT:+:[57743],KIAA1432->chr9:5629025-5776557:+,PDCD1LG2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr9:5510545-5571282:+,programmed_cell_death_1_ligand_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	0.75	0.2182	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	9	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.8	1	0.0436	0.1309	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.1745	FALSE	499	1288	110	792	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544M6.1--LINC00923	5	0	CTD-2544M6.1	4364	chr15:98589896:-	LINC00923	11441	chr15:98286713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0727	0	CTD-2544M6.1->chr15:98589896-98836406:-,LINC00923->chr15:98285448-98417780:-,long_intergenic_non-protein_coding_RNA_923	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0727	TRUE	0	1	0	2	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	4	4	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	1	0	0.89	1	0.0582	0.0582	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.89	1	0.1164	FALSE	189	492	56	216	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PACS1--TSGA10IP	4	4	PACS1	1480	chr11:65838313:+	TSGA10IP	36466	chr11:65726661:+	ONLY_REF_SPLICE	YES	32	2	0.2	0.8	0.0582	0.0582	PACS1->chr11:65837834-66012218:+,phosphofurin_acidic_cluster_sorting_protein_1,TSGA10IP->chr11:65712916-65727434:+,testis_specific_10_interacting_protein	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.8	0.1164	TRUE	0	1	0	1	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LY75--RBMS1	3	7	LY75	32095	chr2:160676237:-	RBMS1	56479	chr2:161223899:-	INCL_NON_REF_SPLICE	YES	353	20	0.03	0.33	0.0436	0.1018	LY75->chr2:160628362-160761260:-,lymphocyte_antigen_75,RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.33	0.1454	TRUE	0	0	0	1	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LY75--RBMS1	4	2	LY75	30900	chr2:160688181:-	RBMS1	56476	chr2:161223902:-	ONLY_REF_SPLICE	YES	322	22	0.02	0.21	0.0582	0.0291	LY75->chr2:160628362-160761260:-,lymphocyte_antigen_75,RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.21	0.0873	TRUE	0	0	0	1	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM222B--FLOT2	3	5	FAM222B	3499	chr17:27161311:-	FLOT2	22273	chr17:27210249:-	ONLY_REF_SPLICE	YES	0	185	1	0.04	0.0436	0.0727	LOCAL_REARRANGEMENT:-:[24103],FAM222B->chr17:27082996-27182250:-,family_with_sequence_similarity_222_member_B,FLOT2->chr17:27206353-27224697:-,flotillin_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	1	0.1163	TRUE	0	1	0	1	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GSE1--CFDP1	4	1	GSE1	1123	chr16:85645137:+	CFDP1	39558	chr16:75339080:-	ONLY_REF_SPLICE	YES	1	111	0.83	0.04	0.0582	0.0145	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,CFDP1->chr16:75327596-75467383:-,craniofacial_development_protein_1	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.83	0.0727	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZBTB20--LSAMP	4	1	ZBTB20	6598	chr3:114693213:-	LSAMP	53449	chr3:115571464:-	ONLY_REF_SPLICE	YES	0	24	1	0.17	0.0582	0.0145	YOSHIHARA_TCGA_num_samples[LGG:1|LUAD:1|PRAD:1],ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,LSAMP->chr3:115521235-117716095:-,limbic_system-associated_membrane_protein	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	1	0.0727	TRUE	0	0	0	2	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	15	13	0.32	0.35	0.0436	0.0582	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.35	0.1018	TRUE	267	562	48	632	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-120D5.1--MID1	3	4	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	7	19	0.5	0.27	0.0436	0.0582	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.27	0.5	0.1018	FALSE	0	48	1	163	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP1--CTB-113P19.1	2	7	G3BP1	1992	chr5:151151597:+	CTB-113P19.1	29869	chr5:151065943:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0291	0.1018	LOCAL_REARRANGEMENT:+:[46263],G3BP1->G3BP_stress_granule_assembly_factor_1,chr5:151150606-151192346:+,CTB-113P19.1->chr5:151056506-151104343:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.82	1	0.1309	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAF--RP11-679B19.2	3	3	MAF	8939	chr16:79619777:-	RP11-679B19.2	13121	chr16:79246798:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0.0436	GTEx_FI:{Brain=[count:45=pct:6.8],Breast=[count:5=pct:4.5],Nerve=[count:5=pct:2.9],Muscle=[count:4=pct:1.7],Uterus=[count:3=pct:7.0],Esophagus=[count:3=pct:0.7],Adipose_Tissue=[count:2=pct:0.7],Stomach=[count:1=pct:1.1],Thyroid=[count:1=pct:0.6]},MAF->Oncogene{Bushman},chr16:79619740-79634611:-,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog,RP11-679B19.2->chr16:79246608-79263350:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0872	TRUE	48	25	3	38	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	2	6	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	2	8	0.8	0.5	0.0291	0.0873	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	0.8	0.1164	TRUE	0	0	0	13	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.0436	0.0291	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.0727	FALSE	189	492	56	216	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MKLN1-AS1--HERC1	2	5	MKLN1-AS1	13605	chr7:130630479:-	HERC1	22354	chr15:64067848:-	ONLY_REF_SPLICE	YES	10	10	0.41	0.41	0.0291	0.0727	MKLN1-AS1->chr7:130626519-130794935:-,HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.41	0.1018	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-141M1.3--STARD13	3	1	RP11-141M1.3	11074	chr13:33933602:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0.0145	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0581	FALSE	49	120	16	70	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	3	1	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0.0145	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0581	FALSE	46	201	11	112	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2281E23.2--DLGAP2	3	0	CTD-2281E23.2	3418	chr8:1208883:+	DLGAP2	8510	chr8:1449532:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	GTEx_FI:{Testis=[count:34=pct:32.4],Brain=[count:24=pct:3.6],Pituitary=[count:4=pct:7.7],Adipose_Tissue=[count:2=pct:0.7],Thyroid=[count:2=pct:1.1]},CTD-2281E23.2->chr8:1054882-1212580:+,DLGAP2->chr8:1449532-1656642:+,discs_large_homolog_associated_protein_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	TRUE	49	61	1	13	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GSE1--CFDP1	1	8	GSE1	3584	chr16:85667738:+	CFDP1	41866	chr16:75327940:-	ONLY_REF_SPLICE	YES	81	136	0.1	0.06	0.0145	0.1164	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,CFDP1->chr16:75327596-75467383:-,craniofacial_development_protein_1	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.1	0.1309	TRUE	0	0	0	1	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0436	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	FALSE	189	492	56	216	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	3	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	26916	chr12:23793831:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	TRUE	0	0	0	1	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	3	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0436	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0436	FALSE	272	151	14	158	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LY75--RBMS1	1	7	LY75	32095	chr2:160676237:-	RBMS1	56476	chr2:161223902:-	ONLY_REF_SPLICE	YES	353	22	0.02	0.27	0.0145	0.1018	LY75->chr2:160628362-160761260:-,lymphocyte_antigen_75,RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.27	0.1163	TRUE	0	0	0	1	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLTA--RP11-336K24.5	2	1	CLTA	4686	chr9:36204176:+	RP11-336K24.5	17578	chr1:155971299:+	ONLY_REF_SPLICE	YES	883	0	0	1	0.0291	0.0145	CLTA->chr9:36190853-36304778:+,clathrin_light_chain_A,RP11-336K24.5->chr1:155961181-155971578:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0436	FALSE	0	0	0	1	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MIR29B1--HERC1	2	1	MIR29B1	2201	chr7:130596869:-	HERC1	16582	chr15:64067848:-	ONLY_REF_SPLICE	YES	0	10	1	0.23	0.0291	0.0145	MIR29B1->chr7:130561495-130598069:-,microRNA_29b-1,HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.23	1	0.0436	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MKLN1-AS1--HERC1	1	5	MKLN1-AS1	13605	chr7:130630479:-	HERC1	20384	chr15:64072751:-	ONLY_REF_SPLICE	YES	10	10	0.38	0.38	0.0145	0.0727	MKLN1-AS1->chr7:130626519-130794935:-,HERC1->HECT_and_RLD_domain_containing_E3_ubiquitin_protein_ligase_family_member_1,chr15:63900817-64126141:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	0.38	0.0872	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--TTC40	2	1	PPP1R12C	8950	chr19:55610152:-	TTC40	34029	chr10:134730186:-	ONLY_REF_SPLICE	YES	84	138	0.03	0.02	0.0291	0.0145	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,TTC40->chr10:134621896-134756327:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.03	0.0436	TRUE	0	2	0	1	1	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PLEKHG1--MTHFD1L	1	4	PLEKHG1	1155	chr6:150921153:+	MTHFD1L	58525	chr6:151355629:+	ONLY_REF_SPLICE	YES	4	43	0.56	0.1	0.0145	0.0582	NEIGHBORS[21886],PLEKHG1->chr6:150920999-151164799:+,pleckstrin_homology_and_RhoGEF_domain_containing_G1,MTHFD1L->chr6:151186685-151423023:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_1-like	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.1	0.56	0.0727	FALSE	0	1	0	1	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PRMT10--NR3C2	2	0	PRMT10	8180	chr4:148581997:-	NR3C2	31323	chr4:149041439:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	PRMT10->chr4:148558936-148605381:-,NR3C2->Oncogene{Bushman},chr4:148999913-149365850:-,nuclear_receptor_subfamily_3_group_C_member_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RFTN1--DAZL	2	0	RFTN1	3399	chr3:16535232:-	DAZL	29050	chr3:16640105:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0291	0	YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1],LOCAL_REARRANGEMENT:-:[72766],RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,DAZL->chr3:16628299-16711813:-,deleted_in_azoospermia_like	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0291	TRUE	0	1	0	2	1	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCL2L13--CECR2	1	3	BCL2L13	2936	chr22:18121652:+	CECR2	25472	chr22:17976435:+	ONLY_REF_SPLICE	YES	21	1	0.16	0.8	0.0145	0.0436	LOCAL_REARRANGEMENT:+:[73771],BCL2L13->BCL2_like_13,chr22:18111621-18213388:+,CECR2->cat_eye_syndrome_chromosome_region,_candidate_2,chr22:17840837-18037850:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.16	0.8	0.0581	TRUE	0	0	0	1	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LY75--RBMS1	1	2	LY75	30900	chr2:160688181:-	RBMS1	55341	chr2:161258613:-	ONLY_REF_SPLICE	NO	322	24	0.01	0.11	0.0145	0.0291	LY75->chr2:160628362-160761260:-,lymphocyte_antigen_75,RBMS1->RNA_binding_motif_single_stranded_interacting_protein_1,chr2:161128662-161350305:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.11	0.0436	FALSE	0	0	0	1	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444A22.1--USP34	1	2	RP11-444A22.1	2236	chr2:60054281:-	USP34	74893	chr2:61420115:-	ONLY_REF_SPLICE	YES	0	103	1	0.03	0.0145	0.0291	RP11-444A22.1->chr2:59445815-60327335:-,USP34->chr2:61414598-61697904:-,ubiquitin_specific_peptidase_34	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	1	0.0436	TRUE	0	0	0	1	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC007392.3--AC007403.2	1	1	AC007392.3	8704	chr2:66924635:+	AC007403.2	19569	chr2:67172420:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0145	0.0145	GTEx_FI:{Colon=[count:4=pct:2.1],Prostate=[count:3=pct:4.9],Brain=[count:3=pct:0.5],Uterus=[count:2=pct:4.7],Esophagus=[count:2=pct:0.5],Bladder=[count:1=pct:11.1]},AC007392.3->chr2:66801162-66957289:+,AC007403.2->chr2:67131568-67198594:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.029	TRUE	1	4	0	3	4	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP003900.6--AC008132.1	1	1	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	NO	2	0	0.5	1	0.0145	0.0145	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.5	1	0.029	TRUE	0	0	0	25	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BRIX1--SUB1	1	1	BRIX1	1522	chr5:34916002:+	SUB1	24635	chr5:32599067:+	ONLY_REF_SPLICE	YES	420	1112	0	0	0.0145	0.0145	BRIX1->BRX1,_biogenesis_of_ribosomes,chr5:34915481-34926101:+,SUB1->SUB1_homolog,_transcriptional_regulator,chr5:32531739-32604185:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.029	FALSE	0	0	0	1	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDB1--FBXL13	1	1	DDB1	12789	chr11:61090483:-	FBXL13	47783	chr7:102553662:-	ONLY_REF_SPLICE	NO	271	0	0.01	1	0.0145	0.0145	DDB1->chr11:61066923-61110068:-,damage_specific_DNA_binding_protein_1,FBXL13->F-box_and_leucine-rich_repeat_protein_13,chr7:102453308-102715286:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.029	FALSE	0	0	0	1	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	POLE4--RP11-355F16.1	1	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	145	0	0.01	1	0.0145	0.0145	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.029	FALSE	5	7	0	37	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444A22.1--AC007131.2	1	1	RP11-444A22.1	2236	chr2:60054281:-	AC007131.2	8658	chr2:59946792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0145	0.0145	GTEx_FI:{Testis=[count:11=pct:10.5]},RP11-444A22.1->chr2:59445815-60327335:-,AC007131.2->chr2:59465851-59960531:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.029	TRUE	0	0	1	2	0	TRUE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SQLE--KIAA0196	1	1	SQLE	2198	chr8:126011936:+	KIAA0196	33825	chr8:126062907:-	ONLY_REF_SPLICE	NO	478	65	0	0.03	0.0145	0.0145	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Caudate_(basal_ganglia)=1},LOCAL_INVERSION:+:-:[1977],SQLE->chr8:126010739-126034525:+,squalene_epoxidase,KIAA0196->KIAA0196,chr8:126036502-126104082:-	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.029	FALSE	0	0	0	1	0	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STIM1--PGAP2	1	1	STIM1	2883	chr11:3877639:+	PGAP2	40143	chr11:3845113:+	ONLY_REF_SPLICE	YES	64	69	0.03	0.03	0.0145	0.0145	LOCAL_REARRANGEMENT:+:[28156],STIM1->chr11:3875757-4114439:+,stromal_interaction_molecule_1,PGAP2->chr11:3818954-3847601:+,post-GPI_attachment_to_proteins_2	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.03	0.029	TRUE	0	2	0	1	1	FALSE	ACH-000815
KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--RP11-326I19.3	1	1	STX18-AS1	8019	chr4:4651269:+	RP11-326I19.3	20475	chr4:4852434:+	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.0145	0.0145	STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,RP11-326I19.3->chr4:4846164-4852554:+	KMH2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.29	1	0.029	TRUE	0	0	0	1	0	TRUE	ACH-000815
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CELF1--SPI1	46	12	CELF1	3345	chr11:47574544:-	SPI1	34013	chr11:47381591:-	ONLY_REF_SPLICE	YES	8	5	0.88	0.92	0.3821	0.0997	NEIGHBORS[87369],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,SPI1->Oncogene{Bushman},Spi-1_proto-oncogene,chr11:47376411-47400127:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	0.92	0.4818	FALSE	0	1	0	1	0	FALSE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL13A--POU2AF1	13	0	RPL13A	2756	chr19:49993771:+	POU2AF1	27682	chr11:111224705:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.108	0	RPL13A->chr19:49990811-49995565:+,ribosomal_protein_L13a,POU2AF1->Oncogene{Bushman},POU_class_2_associating_factor_1,chr11:111222977-111326355:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.108	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	8	1	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0665	0.0083	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0748	TRUE	508	994	45	981	0	FALSE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	7	0	XXbac-BPG252P9.9	1068	chr6:30691587:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0581	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0581	TRUE	0	1	0	48	1	FALSE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	7	0	XXbac-BPG252P9.9	1212	chr6:30691443:-	TUBBP2	4804	chr13:41959289:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0581	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0581	TRUE	0	1	0	48	1	FALSE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF236--FNTB	6	0	ZNF236	33191	chr18:74659608:+	FNTB	53660	chr14:65494171:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0498	0	ZNF236->chr18:74534563-74682683:+,zinc_finger_protein_236,FNTB->chr14:65381203-65529368:+,farnesyltransferase,_CAAX_box,_beta	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	5	0	XXbac-BPG252P9.9	1043	chr6:30691612:-	TUBBP2	4877	chr13:41959216:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0415	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0415	TRUE	0	1	0	48	1	FALSE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2E--RINT1	4	2	KMT2E	1357	chr7:104654982:+	RINT1	34520	chr7:105173271:+	ONLY_REF_SPLICE	YES	12	13	0.33	0.32	0.0332	0.0166	KMT2E->chr7:104654626-104754808:+,lysine_methyltransferase_2E,RINT1->RAD50_interactor_1,chr7:105172532-105208124:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.33	0.0498	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF4G1--MT-ND4L	4	0	EIF4G1	12049	chr3:184043713:+	MT-ND4L	21875	chrM:10613:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0	EIF4G1->Oncogene{Bushman},chr3:184032283-184053146:+,eukaryotic_translation_initiation_factor_4_gamma_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0332	FALSE	0	0	0	1	0	FALSE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSPA5--HDGF	4	0	HSPA5	1154	chr9:128003456:-	HDGF	19648	chr1:156712734:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0	HSPA5->Oncogene{Bushman},chr9:127997132-128003609:-,heat_shock_protein_family_A_(Hsp70)_member_5,HDGF->chr1:156711899-156736717:-,hepatoma-derived_growth_factor	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYBL2--CNOT1	4	0	MYBL2	9189	chr20:42331259:+	CNOT1	22938	chr16:58633258:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0	MYBL2->MYB_proto-oncogene_like_2,Oncogene{Bushman},chr20:42295754-42345136:+,CNOT1->CCR4-NOT_transcription_complex_subunit_1,chr16:58553855-58663790:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MYO18A--CCDC93	4	0	MYO18A	16116	chr17:27445401:-	CCDC93	75252	chr2:118674261:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0	MYO18A->chr17:27400528-27507430:-,myosin_XVIIIA,CCDC93->chr2:118673054-118771709:-,coiled-coil_domain_containing_93	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RALA--ELMO1	4	0	RALA	1343	chr7:39663424:+	ELMO1	22760	chr7:37311487:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0332	0	RALA->Oncogene{Bushman},chr7:39663082-39747723:+,v-ral_simian_leukemia_viral_oncogene_homolog_A_(ras_related),ELMO1->Oncogene{Bushman},chr7:36893961-37488852:-,engulfment_and_cell_motility_1	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SRCAP--IGH@	4	0	SRCAP	26539	chr16:30749844:+	IGH@	130806	chr14:106321279:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0	SRCAP->Snf2-related_CREBBP_activator_protein,chr16:30709530-30755602:+,IGH@->Oncogene{Bushman}	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WIZ--ERAL1	4	0	WIZ	14206	chr19:15538041:-	ERAL1	26209	chr17:27185702:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0332	0	WIZ->chr19:15532319-15560762:-,widely_interspaced_zinc_finger_motifs,ERAL1->Era_like_12S_mitochondrial_rRNA_chaperone_1,chr17:27181956-27188085:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FLII--KIAA1737	3	1	FLII	10257	chr17:18152114:-	KIAA1737	25943	chr14:77582980:+	INCL_NON_REF_SPLICE	YES	19	20	0.17	0.17	0.0249	0.0083	FLII->Oncogene{Bushman},chr17:18148150-18162230:-,flightless_I_actin_binding_protein,KIAA1737->chr14:77564440-77583630:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.17	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HUWE1--XAGE1E	3	1	HUWE1	7413	chrX:53674311:-	XAGE1E	81364	chrX:52544549:-	ONLY_REF_SPLICE	YES	8	3	0.33	0.57	0.0249	0.0083	HUWE1->HECT,_UBA_and_WWE_domain_containing_1,_E3_ubiquitin_protein_ligase,chrX:53559057-53713673:-,XAGE1E->X_antigen_family_member_1E,chrX:52541053-52546197:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.57	0.0332	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC4A2--PTBP1	3	1	SLC4A2	8476	chr7:150761799:+	PTBP1	28163	chr19:807375:+	INCL_NON_REF_SPLICE	YES	24	114	0.14	0.03	0.0249	0.0083	SLC4A2->chr7:150754297-150773614:+,solute_carrier_family_4_member_2,PTBP1->Oncogene{Bushman},chr19:797075-812327:+,polypyrimidine_tract_binding_protein_1	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.14	0.0332	TRUE	0	0	0	1	0	FALSE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADAR--BAZ1B	3	0	ADAR	7577	chr1:154570901:-	BAZ1B	43333	chr7:72855855:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	ADAR->adenosine_deaminase,_RNA-specific,chr1:154554538-154600475:-,BAZ1B->bromodomain_adjacent_to_zinc_finger_domain_1B,chr7:72854728-72936608:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AGPAT1--MAP4K4	3	0	AGPAT1	3215	chr6:32143659:-	MAP4K4	28806	chr2:102476237:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	AGPAT1->1-acylglycerol-3-phosphate_O-acyltransferase_1,chr6:32135989-32145873:-,MAP4K4->chr2:102313312-102511149:+,mitogen-activated_protein_kinase_kinase_kinase_kinase_4	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP11A--MT-ND6	3	0	ARHGAP11A	1696	chr15:32908040:+	MT-ND6	19261	chrM:14248:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	ARHGAP11A->Rho_GTPase_activating_protein_11A,chr15:32907345-32932150:+,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	FALSE	0	0	0	1	0	FALSE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ARHGAP30--RPL41	3	0	ARHGAP30	10496	chr1:161018613:-	RPL41	16331	chr12:56511327:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	ARHGAP30->Rho_GTPase_activating_protein_30,chr1:161016736-161039760:-,RPL41->chr12:56510370-56511727:+,ribosomal_protein_L41	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATP5L--CCT3	3	0	ATP5L	6550	chr11:118279790:+	CCT3	13108	chr1:156308072:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	ATP5L->ATP_synthase,_H+_transporting,_mitochondrial_Fo_complex_subunit_G,chr11:118271869-118302211:+,CCT3->chaperonin_containing_TCP1_subunit_3,chr1:156278759-156337664:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf39--PABPN1	3	0	C15orf39	7252	chr15:75500652:+	PABPN1	14301	chr14:23790841:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	C15orf39->chr15:75487984-75504510:+,chromosome_15_open_reading_frame_39,PABPN1->chr14:23790498-23795394:+,poly(A)_binding_protein_nuclear_1	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CBS--PKM	3	0	CBS	15905	chr21:44479393:-	PKM	34135	chr15:72502185:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	CBS->chr21:44473301-44497053:-,cystathionine-beta-synthase,PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CD72--MT-ND4L	3	0	CD72	5081	chr9:35616867:-	MT-ND4L	13575	chrM:10625:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	CD72->CD72_molecule,chr9:35609530-35646807:-,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	FALSE	0	0	0	1	0	FALSE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CELF1--SPI1	3	0	CELF1	1296	chr11:47586826:-	SPI1	34013	chr11:47381591:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	NEIGHBORS[87369],CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,SPI1->Oncogene{Bushman},Spi-1_proto-oncogene,chr11:47376411-47400127:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	FALSE	0	1	0	1	0	FALSE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CRBN--CCAR1	3	0	CRBN	2137	chr3:3216907:-	CCAR1	36036	chr10:70532745:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	CRBN->cereblon,chr3:3190676-3221394:-,CCAR1->cell_division_cycle_and_apoptosis_regulator_1,chr10:70480769-70552134:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTC-250I14.3--MME	3	0	CTC-250I14.3	2365	chr19:13250524:-	MME	21203	chr3:154857999:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	CTC-250I14.3->chr19:13250431-13251961:-,MME->Oncogene{Bushman},chr3:154741913-154901497:+,membrane_metallo-endopeptidase	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2544N14.3--CKAP2L	3	0	CTD-2544N14.3	1549	chr8:38829982:-	CKAP2L	18724	chr2:113494773:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	CTD-2544N14.3->chr8:38827879-38830530:-,CKAP2L->chr2:113493930-113522254:-,cytoskeleton_associated_protein_2_like	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DDX56--OGFOD1	3	0	DDX56	7099	chr7:44608552:-	OGFOD1	13502	chr16:56485436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	DDX56->DEAD-box_helicase_56,chr7:44605016-44614650:-,OGFOD1->2-oxoglutarate_and_iron_dependent_oxygenase_domain_containing_1,chr16:56485402-56513012:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	DNAJC25--HCLS1	3	0	DNAJC25	6431	chr9:114415476:+	HCLS1	28563	chr3:121350757:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,HCLS1->chr3:121350246-121379774:-,hematopoietic_cell-specific_Lyn_substrate_1	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBXL3--RPS4X	3	0	FBXL3	8679	chr13:77579525:-	RPS4X	18087	chrX:71493715:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	FBXL3->F-box_and_leucine-rich_repeat_protein_3,chr13:77566740-77601330:-,RPS4X->chrX:71475529-71497150:-,ribosomal_protein_S4,_X-linked	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GPN3--SEC13	3	0	GPN3	3242	chr12:110902921:-	SEC13	25060	chr3:10342720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	GPN3->GPN-loop_GTPase_3,chr12:110890289-110907073:-,SEC13->SEC13_homolog,_nuclear_pore_and_COPII_coat_complex_component,chr3:10334815-10362862:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPA2B1--MED19	3	0	HNRNPA2B1	1958	chr7:26240192:-	MED19	16679	chr11:57471868:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1,MED19->chr11:57471186-57479693:-,mediator_complex_subunit_19	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HPS4--EHD1	3	0	HPS4	17931	chr22:26853852:-	EHD1	29169	chr11:64645796:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	HPS4->HPS4,_biogenesis_of_lysosomal_organelles_complex_3_subunit_2,chr22:26839389-26879803:-,EHD1->EH_domain_containing_1,chr11:64619114-64655768:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KMT2A--RBM47	3	0	KMT2A	42348	chr11:118390401:+	RBM47	70019	chr4:40426439:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	KMT2A->ArcherDX_panel,FoundationOne_panel,chr11:118307205-118397539:+,lysine_methyltransferase_2A,RBM47->RNA_binding_motif_protein_47,chr4:40425272-40632892:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LUC7L2--SRSF11	3	0	LUC7L2	6740	chr7:139090540:+	SRSF11	32022	chr1:70715668:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+,SRSF11->chr1:70671365-70718735:+,serine/arginine-rich_splicing_factor_11	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	LYL1--MDH2	3	0	LYL1	3279	chr19:13211697:-	MDH2	15837	chr7:75694151:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	LYL1->Oncogene{Bushman},chr19:13209847-13213975:-,lymphoblastic_leukemia_associated_hematopoiesis_regulator_1,MDH2->chr7:75677369-75696826:+,malate_dehydrogenase_2	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	M6PR--MTPN	3	0	M6PR	7259	chr12:9094328:-	MTPN	11840	chr7:135661890:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	M6PR->chr12:9092959-9102551:-,mannose-6-phosphate_receptor,_cation_dependent,MTPN->chr7:135611509-135662101:-,myotrophin	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAP3K9--RAD51B	3	0	MAP3K9	1769	chr14:71275483:-	RAD51B	48834	chr14:68934889:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	MAP3K9->chr14:71189243-71276251:-,mitogen-activated_protein_kinase_kinase_kinase_9,RAD51B->Oncogene{Bushman},RAD51_paralog_B,chr14:68286496-69196935:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PBRM1--RALBP1	3	0	PBRM1	24634	chr3:52637537:-	RALBP1	52015	chr18:9522158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	PBRM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:52579368-52719933:-,polybromo_1,RALBP1->chr18:9475007-9538114:+,ralA_binding_protein_1	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PFAS--KHSRP	3	0	PFAS	15047	chr17:8172007:+	KHSRP	25363	chr19:6418591:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	PFAS->chr17:8150936-8173809:+,phosphoribosylformylglycinamidine_synthase,KHSRP->KH-type_splicing_regulatory_protein,chr19:6413359-6424805:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RIMKLB--GNA12	3	0	RIMKLB	6401	chr12:8866637:+	GNA12	30534	chr7:2773135:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	RIMKLB->chr12:8834196-8935691:+,ribosomal_modification_protein_rimK-like_family_member_B,GNA12->G_protein_subunit_alpha_12,Oncogene{Bushman},chr7:2767746-2883958:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP6-145B8.3--LIX1L	3	0	RP6-145B8.3	2130	chrX:85340214:-	LIX1L	13171	chr1:145501268:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	RP6-145B8.3->chrX:85339720-85341343:-,LIX1L->chr1:145477085-145501669:+,limb_and_CNS_expressed_1_like	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF12--FARSA	3	0	TCF12	31001	chr15:57565369:+	FARSA	46498	chr19:13039247:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,FARSA->chr19:13033293-13044851:-,phenylalanyl-tRNA_synthetase_alpha_subunit	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	THAP4--SRRM1	3	0	THAP4	5889	chr2:242545762:-	SRRM1	36733	chr1:24996653:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	THAP4->THAP_domain_containing_4,chr2:242523820-242576864:-,SRRM1->chr1:24958207-24999758:+,serine_and_arginine_repetitive_matrix_1	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMEM38A--MAN1C1	3	0	TMEM38A	1215	chr19:16772152:+	MAN1C1	25377	chr1:26098148:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0249	0	TMEM38A->chr19:16771938-16800840:+,transmembrane_protein_38A,MAN1C1->chr1:25943959-26112698:+,mannosidase_alpha_class_1C_member_1	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TMUB1--RBM4	3	0	TMUB1	2716	chr7:150778918:-	RBM4	11802	chr11:66411247:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	TMUB1->chr7:150778167-150780633:-,transmembrane_and_ubiquitin_like_domain_containing_1,RBM4->RNA_binding_motif_protein_4,chr11:66384097-66434153:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR90--CPSF7	3	0	WDR90	17960	chr16:716704:+	CPSF7	22798	chr11:61196795:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	WDR90->WD_repeat_domain_90,chr16:699311-717833:+,CPSF7->chr11:61170121-61197503:-,cleavage_and_polyadenylation_specific_factor_7	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	XXbac-BPG252P9.9--TUBBP2	3	0	XXbac-BPG252P9.9	1137	chr6:30691518:-	TUBBP2	4888	chr13:41959205:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0249	0	NUCLCLUST,XXbac-BPG252P9.9->chr6:30690882-30691654:-,TUBBP2->chr13:41958909-41959319:-,tubulin_beta_pseudogene_2	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0249	TRUE	0	1	0	48	1	FALSE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ASF1B--SBF1	2	0	ASF1B	3902	chr19:14232344:-	SBF1	24209	chr22:50887079:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	ASF1B->anti-silencing_function_1B_histone_chaperone,chr19:14230321-14247768:-,SBF1->SET_binding_factor_1,chr22:50883429-50913454:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BAZ1A--PRKAR1B	2	0	BAZ1A	2156	chr14:35343698:-	PRKAR1B	41621	chr7:751164:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	BAZ1A->bromodomain_adjacent_to_zinc_finger_domain_1A,chr14:35221937-35344853:-,PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CDK8--IFT88	2	0	CDK8	1631	chr13:26828906:+	IFT88	46263	chr13:21245112:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	CDK8->ArcherDX_panel,FoundationOne_panel,chr13:26828276-26979375:+,cyclin-dependent_kinase_8,IFT88->chr13:21140585-21265503:+,intraflagellar_transport_88	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COA1--ANAPC2	2	0	COA1	17190	chr7:43679048:-	ANAPC2	28465	chr9:140080808:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,ANAPC2->anaphase_promoting_complex_subunit_2,chr9:140069236-140082989:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FIS1--MTA3	2	0	FIS1	1422	chr7:100895176:-	MTA3	25776	chr2:42922905:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	FIS1->chr7:100882739-100895597:-,fission,_mitochondrial_1,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FNBP4--ZNF726	2	0	FNBP4	6363	chr11:47772468:-	ZNF726	35860	chr19:24126296:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,ZNF726->chr19:24097678-24127961:+,zinc_finger_protein_726	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GRPEL2--SLC25A37	2	0	GRPEL2	1187	chr5:148725179:+	SLC25A37	18796	chr8:23425835:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	GRPEL2->GrpE_like_2,_mitochondrial,chr5:148724993-148734146:+,SLC25A37->chr8:23386318-23432976:+,solute_carrier_family_25_member_37	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HECTD1--ARHGAP5	2	0	HECTD1	3008	chr14:31675003:-	ARHGAP5	50403	chr14:32559708:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	HECTD1->HECT_domain_E3_ubiquitin_protein_ligase_1,chr14:31569318-31677010:-,ARHGAP5->Rho_GTPase_activating_protein_5,chr14:32545320-32628934:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HLA-DQA1--WASF1	2	0	HLA-DQA1	3060	chr6:32600686:+	WASF1	19439	chr6:110481935:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	HLA-DQA1->chr6:32595956-32614839:+,major_histocompatibility_complex,_class_II,_DQ_alpha_1,WASF1->WAS_protein_family_member_1,chr6:110421022-110501207:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	FALSE	0	0	0	1	0	FALSE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--AC003002.6	2	0	IGLL5	1480	chr22:23230439:+	AC003002.6	8567	chr19:57905556:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,AC003002.6->chr19:57901252-57931362:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--ZNF787	2	0	IGLL5	1480	chr22:23230439:+	ZNF787	11280	chr19:56600461:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,ZNF787->chr19:56598732-56632649:-,zinc_finger_protein_787	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MRPL1--MMADHC	2	0	MRPL1	7136	chr4:78815404:+	MMADHC	23059	chr2:150427685:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	MRPL1->chr4:78783674-78873944:+,mitochondrial_ribosomal_protein_L1,MMADHC->chr2:150426148-150444330:-,methylmalonic_aciduria_and_homocystinuria,_cblD_type	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NDUFB8--PSPHP1	2	0	NDUFB8	1621	chr10:102289137:-	PSPHP1	16283	chr7:55840874:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	NDUFB8->NADH:ubiquinone_oxidoreductase_subunit_B8,chr10:102265385-102289638:-,chr10:102267203-102289757:-,PSPHP1->chr7:55832490-55840981:+,phosphoserine_phosphatase_pseudogene_1	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTP4A1--LUC7L2	2	0	PTP4A1	4040	chr6:64282624:+	LUC7L2	19015	chr7:139083345:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	PTP4A1->chr6:64231666-64293492:+,protein_tyrosine_phosphatase_type_IVA,_member_1,LUC7L2->LUC7-like_2_pre-mRNA_splicing_factor,chr7:139026106-139107345:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RHOT1--LRBA	2	0	RHOT1	1276	chr17:30469748:+	LRBA	77342	chr4:151412187:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	RHOT1->chr17:30469473-30580393:+,ras_homolog_family_member_T1,LRBA->LPS_responsive_beige-like_anchor_protein,Oncogene{Bushman},chr4:151185594-151936879:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23A--RBM39	2	0	RPL23A	2498	chr17:27047908:+	RBM39	24647	chr20:34301018:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	RPL23A->chr17:27046411-27051377:+,ribosomal_protein_L23a,RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SMARCAD1--TLE1	2	0	SMARCAD1	3092	chr4:95134303:+	TLE1	37799	chr9:84249216:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	SMARCAD1->SWI/SNF-related,_matrix-associated_actin-dependent_regulator_of_chromatin,_subfamily_a,_containing_DEAD/H_box_1,chr4:95128762-95212443:+,TLE1->chr9:84198598-84304220:-,transducin_like_enhancer_of_split_1	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STK38--PSMD6	2	0	STK38	1281	chr6:36514967:-	PSMD6	30840	chr3:63996631:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	STK38->chr6:36461669-36515247:-,serine/threonine_kinase_38,PSMD6->chr3:63996225-64009658:-,proteasome_26S_subunit,_non-ATPase_6	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USP9X--POLR3C	2	0	USP9X	1475	chrX:40945362:+	POLR3C	56270	chr1:145608659:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	USP9X->chrX:40944888-41095832:+,ubiquitin_specific_peptidase_9,_X-linked,POLR3C->chr1:145592605-145611025:-,polymerase_(RNA)_III_subunit_C	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR37--PFKP	2	0	WDR37	11866	chr10:1142186:+	PFKP	45772	chr10:3172011:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	WDR37->WD_repeat_domain_37,chr10:1095478-1178237:+,PFKP->chr10:3108525-3179904:+,phosphofructokinase,_platelet	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF177--RABL6	2	0	ZNF177	1231	chr19:9435080:+	RABL6	25636	chr9:139717977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0166	0	ZNF177->chr19:9434850-9493293:+,chr19:9435021-9493293:+,zinc_finger_protein_177,RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HPS4--CCNI	1	1	HPS4	4533	chr22:26875231:-	CCNI	28940	chr4:77987558:-	ONLY_REF_SPLICE	NO	126	18	0.02	0.1	0.0083	0.0083	HPS4->HPS4,_biogenesis_of_lysosomal_organelles_complex_3_subunit_2,chr22:26839389-26879803:-,CCNI->chr4:77968311-77997158:-,cyclin_I	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.1	0.0166	TRUE	0	0	0	1	0	FALSE	ACH-000567
ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTBP2--POC5	1	1	PTBP2	2930	chr1:97189150:+	POC5	36340	chr5:74990656:-	ONLY_REF_SPLICE	NO	0	3	1	0.4	0.0083	0.0083	PTBP2->chr1:97187221-97289294:+,polypyrimidine_tract_binding_protein_2,POC5->POC5_centriolar_protein,chr5:74969949-75013313:-	ST486_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.0166	TRUE	0	0	0	1	0	TRUE	ACH-000567
NCIH2122_LUNG	CDCA8--GRIK3	109	86	CDCA8	1616	chr1:38158705:+	GRIK3	15726	chr1:37356697:-	ONLY_REF_SPLICE	YES	103	0	0.65	1	1.5049	1.1874	{Klijn_CCL:Lung=1},CDCA8->cell_division_cycle_associated_8,chr1:38158090-38175391:+,GRIK3->chr1:37261128-37499730:-,glutamate_ionotropic_receptor_kainate_type_subunit_3	NCIH2122_LUNG	0.65	1	2.6923	TRUE	0	0	0	1	0	TRUE	ACH-000311
NCIH2122_LUNG	TIMM23B--LINC00843	84	44	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1597	0.6075	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH2122_LUNG	1	1	1.7672	TRUE	508	994	45	981	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-TA--MT-TC	76	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0493	0.0414	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2122_LUNG	1	1	1.0907	FALSE	462	80	0	856	0	FALSE	ACH-000311
NCIH2122_LUNG	CDCA8--GRIK3	49	89	CDCA8	2657	chr1:38161622:+	GRIK3	15726	chr1:37356697:-	ONLY_REF_SPLICE	YES	87	0	0.61	1	0.6765	1.2288	{Klijn_CCL:Lung=1},CDCA8->cell_division_cycle_associated_8,chr1:38158090-38175391:+,GRIK3->chr1:37261128-37499730:-,glutamate_ionotropic_receptor_kainate_type_subunit_3	NCIH2122_LUNG	0.61	1	1.9053	TRUE	0	0	0	1	0	TRUE	ACH-000311
NCIH2122_LUNG	TIMM23--RP11-464F9.1	51	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	415	6	0.12	0.9	0.7041	0.0828	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH2122_LUNG	0.12	0.9	0.7869	TRUE	519	3926	326	965	0	FALSE	ACH-000311
NCIH2122_LUNG	RDX--SS18	31	0	RDX	18191	chr11:110101311:-	SS18	50746	chr18:23596784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.428	0	RDX->chr11:110045605-110167447:-,radixin,SS18->Oncogene{Bushman},SS18,_nBAF_chromatin_remodeling_complex_subunit,chr18:23596578-23671181:-	NCIH2122_LUNG	1	1	0.428	TRUE	0	0	0	2	0	TRUE	ACH-000311
NCIH2122_LUNG	MT-ND5--MT-ATP8	29	4	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	4326	8	0.01	0.8	0.4004	0.0552	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0.01	0.8	0.4556	FALSE	43	37	8	105	0	FALSE	ACH-000311
NCIH2122_LUNG	PVT1--MTF1	24	21	PVT1	8346	chr8:128903244:+	MTF1	39629	chr1:38283154:-	ONLY_REF_SPLICE	YES	40	12	0.53	0.79	0.3314	0.2899	PVT1->Oncogene{Bushman},Pvt1_oncogene_(non-protein_coding),chr8:128806779-129113499:+,MTF1->chr1:38275239-38325292:-,metal-regulatory_transcription_factor_1	NCIH2122_LUNG	0.53	0.79	0.6213	TRUE	0	0	0	1	0	TRUE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	26	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	14987	4	0	0.87	0.359	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	0.87	0.3728	FALSE	230	193	14	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND5--MT-ATP8	22	14	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	6	0	0.86	1	0.3037	0.1933	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0.86	1	0.497	FALSE	43	37	8	105	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO1	15	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	12489	33448	0	0	0.2071	0.0276	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2122_LUNG	0	0	0.2347	FALSE	183	104	9	328	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	12	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15139	8	0	0.62	0.1657	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	0.62	0.1795	FALSE	230	198	14	283	0	FALSE	ACH-000311
NCIH2122_LUNG	RP11-123O10.4--GRIP1	11	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1519	0.0414	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2122_LUNG	1	1	0.1933	FALSE	416	2512	207	587	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	9	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	20957	8	0	0.67	0.1243	0.0966	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	0.67	0.2209	FALSE	231	217	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	RDX--SS18	10	0	RDX	18187	chr11:110101315:-	SS18	50742	chr18:23596788:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1381	0	RDX->chr11:110045605-110167447:-,radixin,SS18->Oncogene{Bushman},SS18,_nBAF_chromatin_remodeling_complex_subunit,chr18:23596578-23671181:-	NCIH2122_LUNG	1	1	0.1381	TRUE	0	0	0	2	0	TRUE	ACH-000311
NCIH2122_LUNG	SLC1A5--MT-ND4L	10	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1381	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2122_LUNG	1	1	0.1381	FALSE	0	0	0	189	0	FALSE	ACH-000311
NCIH2122_LUNG	SMIM12--DLGAP3	9	3	SMIM12	5046	chr1:35321372:-	DLGAP3	23598	chr1:35351886:-	ONLY_REF_SPLICE	YES	1329	0	0.01	1	0.1243	0.0414	LOCAL_REARRANGEMENT:-:[5620],SMIM12->chr1:35178338-35325417:-,small_integral_membrane_protein_12,DLGAP3->chr1:35331037-35395186:-,discs_large_homolog_associated_protein_3	NCIH2122_LUNG	0.01	1	0.1657	TRUE	0	0	0	1	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO2	7	9	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	64	5	0.2	0.76	0.0966	0.1243	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2122_LUNG	0.2	0.76	0.2209	FALSE	59	21	0	114	0	FALSE	ACH-000311
NCIH2122_LUNG	PKM--PPIA	8	5	PKM	16758	chr15:72494872:-	PPIA	23273	chr7:44836291:+	INCL_NON_REF_SPLICE	YES	7004	0	0	1	0.1105	0.069	PKM->chr15:72491370-72524164:-,pyruvate_kinase,_muscle,PPIA->chr7:44836279-44864163:+,peptidylprolyl_isomerase_A	NCIH2122_LUNG	0	1	0.1795	TRUE	0	0	0	18	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO2	6	10	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	68	4	0.19	0.8	0.0828	0.1381	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2122_LUNG	0.19	0.8	0.2209	FALSE	59	21	0	114	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	6	8	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20304	71	0	0.16	0.0828	0.1105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	0.16	0.1933	FALSE	231	217	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND5--MT-ATP8	7	4	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	7131	71	0	0.13	0.0966	0.0552	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	0.13	0.1518	FALSE	43	37	8	105	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND5--MT-ATP8	4	14	MT-ND5	2644	chrM:13980:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	2136	0	0.01	1	0.0552	0.1933	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0.01	1	0.2485	FALSE	43	37	8	105	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO2	5	9	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	64	4	0.18	0.78	0.069	0.1243	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2122_LUNG	0.18	0.78	0.1933	FALSE	59	21	0	114	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	4	13	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	17232	0	0	1	0.0552	0.1795	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	1	0.2347	FALSE	231	215	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	5	9	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	NO	20902	0	0	1	0.069	0.1243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	1	0.1933	FALSE	231	217	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO1	7	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0966	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2122_LUNG	1	1	0.0966	FALSE	183	104	9	328	0	FALSE	ACH-000311
NCIH2122_LUNG	RP11-96H19.1--RP11-446N19.1	5	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.069	0.1105	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2122_LUNG	0.76	1	0.1795	FALSE	515	4851	409	746	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	5	7	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	20378	0	0	1	0.069	0.0966	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	1	0.1656	FALSE	231	217	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO2	5	6	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	56	4	0.16	0.73	0.069	0.0828	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2122_LUNG	0.16	0.73	0.1518	FALSE	59	21	0	114	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	5	6	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	20513	872	0	0.01	0.069	0.0828	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	0.01	0.1518	FALSE	231	217	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND5--MT-ATP8	3	14	MT-ND5	2749	chrM:14085:+	MT-ATP8	5896	chrM:8449:+	INCL_NON_REF_SPLICE	YES	3	0	0.85	1	0.0414	0.1933	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0.85	1	0.2347	FALSE	43	37	8	105	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	6	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17916	8	0	0.47	0.0828	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	0.47	0.0966	FALSE	231	205	14	283	0	FALSE	ACH-000311
NCIH2122_LUNG	RP11-96H19.1--RP11-446N19.1	4	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.0552	0.1243	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2122_LUNG	0.76	1	0.1795	FALSE	407	2205	196	549	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	6	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0828	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	1	1	0.0828	FALSE	231	204	14	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND5--MT-ATP8	4	8	MT-ND5	2687	chrM:14023:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	806	8	0.01	0.6	0.0552	0.1105	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0.01	0.6	0.1657	FALSE	43	37	8	105	0	FALSE	ACH-000311
NCIH2122_LUNG	NCOR2--UBC	6	0	NCOR2	1282	chr12:125051854:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0828	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH2122_LUNG	1	1	0.0828	TRUE	145	312	16	51	0	FALSE	ACH-000311
NCIH2122_LUNG	RP11-59N23.1--CMAS	5	4	RP11-59N23.1	1106	chr12:21913019:+	CMAS	6877	chr12:22208083:+	ONLY_REF_SPLICE	YES	4	186	0.69	0.05	0.069	0.0552	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH2122_LUNG	0.05	0.69	0.1242	TRUE	21	102	17	28	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO1	3	10	MT-ATP6	1477	chrM:9003:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	9928	30060	0	0	0.0414	0.1381	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2122_LUNG	0	0	0.1795	FALSE	183	104	9	328	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO2	3	10	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	64	4	0.17	0.76	0.0414	0.1381	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2122_LUNG	0.17	0.76	0.1795	FALSE	59	21	0	114	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO2	5	2	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	46	4	0.13	0.64	0.069	0.0276	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2122_LUNG	0.13	0.64	0.0966	FALSE	59	21	0	114	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	YES	20165	0	0	1	0.0414	0.1381	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	1	0.1795	FALSE	231	217	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-TA--MT-TC	4	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0.0828	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2122_LUNG	1	1	0.138	FALSE	462	80	0	856	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	4	5	MT-ND4	1521	chrM:11280:+	MT-ATP8	5495	chrM:8482:+	INCL_NON_REF_SPLICE	YES	24274	626	0	0.01	0.0552	0.069	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	0.01	0.1242	FALSE	231	217	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	3	9	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	20689	0	0	1	0.0414	0.1243	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	1	0.1657	FALSE	231	217	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	OPN3--CHRM3-AS2	4	5	OPN3	2592	chr1:241803184:-	CHRM3-AS2	19871	chr1:239877564:-	ONLY_REF_SPLICE	YES	108	0	0.08	1	0.0552	0.069	OPN3->chr1:241753404-241840678:-,opsin_3,CHRM3-AS2->CHRM3_antisense_RNA_2,chr1:239866684-239893765:-	NCIH2122_LUNG	0.08	1	0.1242	TRUE	0	0	0	1	0	TRUE	ACH-000311
NCIH2122_LUNG	AEBP2--RP11-405A12.2	5	0	AEBP2	15624	chr12:19873625:+	RP11-405A12.2	19888	chr12:20076132:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.069	0	NEIGHBORS[54650],AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+,RP11-405A12.2->chr12:19928385-20162871:+	NCIH2122_LUNG	1	1	0.069	FALSE	0	0	0	8	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO1	3	8	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4203	33956	0	0	0.0414	0.1105	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2122_LUNG	0	0	0.1519	FALSE	183	104	9	328	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	4	4	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	24593	820	0	0.01	0.0552	0.0552	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	0.01	0.1104	FALSE	231	217	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	20775	0	0	1	0.0414	0.1105	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	1	0.1519	FALSE	231	217	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND5--MT-ATP8	3	8	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11	71	0.5	0.13	0.0414	0.1105	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0.13	0.5	0.1519	FALSE	43	37	8	105	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND5--MT-ATP8	4	4	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	3632	1240	0	0.01	0.0552	0.0552	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	0.01	0.1104	FALSE	43	37	8	105	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-TA--MT-TC	4	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0.0552	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2122_LUNG	1	1	0.1104	FALSE	462	80	0	856	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-TA--MT-TC	4	4	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0.0552	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH2122_LUNG	1	1	0.1104	FALSE	462	80	0	856	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO1	3	7	MT-ATP6	1158	chrM:8684:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	15145	30340	0	0	0.0414	0.0966	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2122_LUNG	0	0	0.138	FALSE	183	104	9	328	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	20723	0	0	1	0.0414	0.0966	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	1	0.138	FALSE	231	217	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	4	3	MT-ND4	1467	chrM:11226:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	22968	0	0	1	0.0552	0.0414	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	1	0.0966	FALSE	231	217	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	1531	chrM:11290:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	24921	3	0	0.77	0.0414	0.0966	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	0.77	0.138	FALSE	231	217	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND5--MT-ATP8	3	7	MT-ND5	2626	chrM:13962:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	2592	3	0	0.77	0.0414	0.0966	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	0.77	0.138	FALSE	43	37	8	105	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO1	3	6	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	14282	30520	0	0	0.0414	0.0828	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2122_LUNG	0	0	0.1242	FALSE	183	104	9	328	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO1	3	6	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	15145	33096	0	0	0.0414	0.0828	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2122_LUNG	0	0	0.1242	FALSE	183	104	9	328	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO2	3	6	MT-ATP6	1141	chrM:8667:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	56	4	0.14	0.69	0.0414	0.0828	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2122_LUNG	0.14	0.69	0.1242	FALSE	59	21	0	114	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	4	2	MT-ND4	1828	chrM:11587:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	20304	2059	0	0	0.0552	0.0276	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	0	0.0828	FALSE	231	217	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	HCG4P5--SPP1	3	5	HCG4P5	1476	chr6:29910369:-	SPP1	5041	chr4:88896866:+	INCL_NON_REF_SPLICE	YES	5	0	0.62	1	0.0414	0.069	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,SPP1->Oncogene{Bushman},chr4:88896819-88904562:+,secreted_phosphoprotein_1	NCIH2122_LUNG	0.62	1	0.1104	TRUE	0	1	0	4	1	TRUE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO1	3	5	MT-ATP6	1139	chrM:8665:+	MT-CO1	5217	chrM:6439:+	INCL_NON_REF_SPLICE	YES	13583	30365	0	0	0.0414	0.069	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2122_LUNG	0	0	0.1104	FALSE	183	104	9	328	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO2	4	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	21	4	0.19	0.56	0.0552	0.0138	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2122_LUNG	0.19	0.56	0.069	FALSE	59	21	0	114	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	4	1	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	21617	1649	0	0	0.0552	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	0	0.069	FALSE	231	205	14	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	4	1	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	15496	0	0	1	0.0552	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	1	0.069	FALSE	231	204	14	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1503	chrM:11262:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	22520	0	0	1	0.0414	0.069	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	1	0.1104	FALSE	231	217	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	RNF2--LINC00970	4	1	RNF2	1286	chr1:185014781:+	LINC00970	15916	chr1:169025471:-	ONLY_REF_SPLICE	YES	49	0	0.09	1	0.0552	0.0138	RNF2->chr1:185014496-185071740:+,ring_finger_protein_2,LINC00970->chr1:168873143-169056243:-,long_intergenic_non-protein_coding_RNA_970	NCIH2122_LUNG	0.09	1	0.069	TRUE	0	0	0	1	0	TRUE	ACH-000311
NCIH2122_LUNG	SLC1A5--MT-ND4L	4	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1571	0	0	1	0.0552	0.0138	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH2122_LUNG	0	1	0.069	FALSE	0	0	0	189	0	FALSE	ACH-000311
NCIH2122_LUNG	EIF1--RPS28	4	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH2122_LUNG	1	1	0.0552	TRUE	0	0	0	81	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	22204	0	0	1	0.0414	0.0414	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	1	0.0828	FALSE	231	217	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	3	3	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	22208	0	0	1	0.0414	0.0414	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	1	0.0828	FALSE	231	217	16	283	0	FALSE	ACH-000311
NCIH2122_LUNG	RNF2--LINC00970	3	3	RNF2	1286	chr1:185014781:+	LINC00970	14808	chr1:169029757:-	ONLY_REF_SPLICE	YES	49	0	0.11	1	0.0414	0.0414	RNF2->chr1:185014496-185071740:+,ring_finger_protein_2,LINC00970->chr1:168873143-169056243:-,long_intergenic_non-protein_coding_RNA_970	NCIH2122_LUNG	0.11	1	0.0828	TRUE	0	0	0	1	0	TRUE	ACH-000311
NCIH2122_LUNG	EIF1--RPS28	3	2	EIF1	1112	chr17:39845248:+	RPS28	8154	chr19:8386411:+	INCL_NON_REF_SPLICE	YES	129	0	0.04	1	0.0414	0.0276	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH2122_LUNG	0.04	1	0.069	TRUE	0	0	0	81	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO2	3	2	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	43	4	0.1	0.56	0.0414	0.0276	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2122_LUNG	0.1	0.56	0.069	FALSE	59	21	0	114	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO2	3	2	MT-ATP6	1113	chrM:8639:+	MT-CO2	4821	chrM:7725:+	INCL_NON_REF_SPLICE	YES	21	4	0.19	0.56	0.0414	0.0276	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	NCIH2122_LUNG	0.19	0.56	0.069	FALSE	59	21	0	114	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND5--MT-ATP8	3	2	MT-ND5	2223	chrM:13559:+	MT-ATP8	5968	chrM:8521:+	INCL_NON_REF_SPLICE	YES	4385	2073	0	0	0.0414	0.0276	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	0	0.069	FALSE	43	37	8	105	0	FALSE	ACH-000311
NCIH2122_LUNG	RP11-96H19.1--RP11-446N19.1	1	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0138	0.1381	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2122_LUNG	1	1	0.1519	FALSE	192	492	57	212	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14987	8	0	0.33	0.0414	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	0.33	0.0552	FALSE	230	193	14	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	NO	15015	0	0	1	0.0414	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	1	0.0552	FALSE	230	197	14	283	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1192	chrM:10951:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13294	71	0	0.05	0.0414	0.0138	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	0	0.05	0.0552	FALSE	230	193	14	283	0	FALSE	ACH-000311
NCIH2122_LUNG	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0138	0.1243	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH2122_LUNG	1	1	0.1381	FALSE	467	2173	244	435	0	FALSE	ACH-000311
NCIH2122_LUNG	C17orf76-AS1--PTCD3	3	0	C17orf76-AS1	1593	chr17:16342728:+	PTCD3	33495	chr2:86363644:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0414	0	C17orf76-AS1->chr17:16342136-16381992:+,PTCD3->chr2:86333305-86369280:+,pentatricopeptide_repeat_domain_3	NCIH2122_LUNG	1	1	0.0414	TRUE	0	3	0	8	0	TRUE	ACH-000311
NCIH2122_LUNG	EIF1--RPS28	3	0	EIF1	1087	chr17:39845223:+	RPS28	8126	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCIH2122_LUNG	1	1	0.0414	TRUE	0	0	0	81	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH2122_LUNG	1	1	0.0414	FALSE	183	104	9	328	0	FALSE	ACH-000311
NCIH2122_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1224	chrM:10983:+	MT-ATP8	5575	chrM:8562:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH2122_LUNG	1	1	0.0414	FALSE	231	204	14	283	0	FALSE	ACH-000311
NCIH2122_LUNG	RDX--SS18	3	0	RDX	18192	chr11:110101310:-	SS18	50747	chr18:23596783:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	RDX->chr11:110045605-110167447:-,radixin,SS18->Oncogene{Bushman},SS18,_nBAF_chromatin_remodeling_complex_subunit,chr18:23596578-23671181:-	NCIH2122_LUNG	1	1	0.0414	TRUE	0	0	0	2	0	TRUE	ACH-000311
NCIH2122_LUNG	RHOA--KRT17	3	0	RHOA	6587	chr3:49405930:-	KRT17	13988	chr17:39780816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0414	0	RHOA->Oncogene{Bushman},chr3:49396578-49450431:-,ras_homolog_family_member_A,KRT17->chr17:39775689-39781094:-,keratin_17	NCIH2122_LUNG	1	1	0.0414	TRUE	0	0	0	1	0	TRUE	ACH-000311
NCIH2122_LUNG	RP11-120D5.1--MID1	3	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0414	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH2122_LUNG	1	1	0.0414	FALSE	16	356	14	466	0	FALSE	ACH-000311
NCIH2122_LUNG	RP11-123O10.4--GRIP1	2	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0.0138	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH2122_LUNG	1	1	0.0414	FALSE	93	270	15	244	0	FALSE	ACH-000311
NCIH2122_LUNG	CDCA8--GRIK3	2	0	CDCA8	1161	chr1:38158250:+	GRIK3	15726	chr1:37356697:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	{Klijn_CCL:Lung=1},CDCA8->cell_division_cycle_associated_8,chr1:38158090-38175391:+,GRIK3->chr1:37261128-37499730:-,glutamate_ionotropic_receptor_kainate_type_subunit_3	NCIH2122_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000311
NCIH2122_LUNG	RP11-59N23.1--CMAS	1	2	RP11-59N23.1	1106	chr12:21913019:+	CMAS	7183	chr12:22208389:+	ONLY_REF_SPLICE	YES	4	182	0.43	0.02	0.0138	0.0276	GTEx_FI:{Testis=[count:14=pct:13.3],Lung=[count:7=pct:4.2],Kidney=[count:1=pct:7.1],Adipose_Tissue=[count:1=pct:0.3]},RP11-59N23.1->chr12:21912914-21919639:+,CMAS->chr12:22199108-22218608:+,cytidine_monophosphate_N-acetylneuraminic_acid_synthetase	NCIH2122_LUNG	0.02	0.43	0.0414	TRUE	21	102	17	28	0	FALSE	ACH-000311
NCIH2122_LUNG	ANKRD52--FKBP4	1	1	ANKRD52	13084	chr12:56637022:-	FKBP4	23701	chr12:2906304:+	ONLY_REF_SPLICE	NO	65	655	0.03	0	0.0138	0.0138	ANKRD52->ankyrin_repeat_domain_52,chr12:56631591-56652175:-,FKBP4->FK506_binding_protein_4,chr12:2904119-2914576:+	NCIH2122_LUNG	0	0.03	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000311
NCIH2122_LUNG	C17orf76-AS1--RBCK1	1	1	C17orf76-AS1	1593	chr17:16342728:+	RBCK1	17726	chr20:398170:+	ONLY_REF_SPLICE	YES	223	559	0.01	0	0.0138	0.0138	C17orf76-AS1->chr17:16342136-16381992:+,RBCK1->RANBP2-type_and_C3HC4-type_zinc_finger_containing_1,chr20:388142-411610:+	NCIH2122_LUNG	0	0.01	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000311
NCIH2122_LUNG	CMTM8--CMTM7	1	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	52	29	0.04	0.06	0.0138	0.0138	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	NCIH2122_LUNG	0.04	0.06	0.0276	FALSE	118	557	29	88	0	FALSE	ACH-000311
NCIH2122_LUNG	LINC00473--PDE10A	1	1	LINC00473	9097	chr6:166324296:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	NO	8	1	0.2	0.67	0.0138	0.0138	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	NCIH2122_LUNG	0.2	0.67	0.0276	FALSE	2	5	0	11	0	FALSE	ACH-000311
NCIH2122_LUNG	LINC00473--PDE10A	1	1	LINC00473	1520	chr6:166401017:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	80	1	0.02	0.67	0.0138	0.0138	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	NCIH2122_LUNG	0.02	0.67	0.0276	FALSE	6	13	0	15	0	FALSE	ACH-000311
NCIH2122_LUNG	MTHFD2--GNB2L1	1	1	MTHFD2	7879	chr2:74438993:+	GNB2L1	19204	chr5:180669345:-	ONLY_REF_SPLICE	YES	1993	5451	0	0	0.0138	0.0138	MTHFD2->chr2:74425689-74444692:+,methylenetetrahydrofolate_dehydrogenase_(NADP+_dependent)_2,_methenyltetrahydrofolate_cyclohydrolase,GNB2L1->Oncogene{Bushman},chr5:180663909-180675096:-	NCIH2122_LUNG	0	0	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000311
NCIH2122_LUNG	NCOR2--UBC	1	1	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	178	145	0.01	0.01	0.0138	0.0138	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NCIH2122_LUNG	0.01	0.01	0.0276	FALSE	52	148	13	33	0	FALSE	ACH-000311
NCIH2122_LUNG	RP11-344P13.4--GRIK3	1	1	RP11-344P13.4	1643	chr1:121251539:-	GRIK3	21202	chr1:37271927:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0138	0.0138	RP11-344P13.4->chr1:121236177-121252181:-,GRIK3->chr1:37261128-37499730:-,glutamate_ionotropic_receptor_kainate_type_subunit_3	NCIH2122_LUNG	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000311
NCIH2122_LUNG	ZNF503-AS2--C10orf11	1	1	ZNF503-AS2	2261	chr10:77162019:+	C10orf11	15320	chr10:77795766:+	ONLY_REF_SPLICE	YES	7	0	0.22	1	0.0138	0.0138	GTEx_FI:{Brain=[count:26=pct:3.9]},ZNF503-AS2->ZNF503_antisense_RNA_2,chr10:77160759-77168738:+,C10orf11->chr10:77360998-78319925:+,chromosome_10_open_reading_frame_11	NCIH2122_LUNG	0.22	1	0.0276	TRUE	21	7	0	2	0	FALSE	ACH-000311
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	188	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.0737	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	2.0737	FALSE	369	2501	205	193	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	LUC7L--CLEC18A	79	40	LUC7L	9816	chr16:249061:-	CLEC18A	17094	chr16:69985164:+	ONLY_REF_SPLICE	YES	34	0	0.78	1	0.8714	0.4412	LUC7L->LUC7_like,chr16:238968-279462:-,CLEC18A->C-type_lectin_domain_family_18_member_A,chr16:69984810-69998141:+	HSC2_UPPER_AERODIGESTIVE_TRACT	0.78	1	1.3126	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	70	14	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7721	0.1544	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.9265	FALSE	462	80	0	856	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	62	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6839	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.6839	FALSE	499	1288	110	792	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	58	14	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6397	0.1544	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.7941	TRUE	508	994	45	981	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	40	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4412	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.4412	FALSE	369	2501	205	193	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	14	95	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1544	1.0479	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	1.2023	FALSE	369	2501	205	193	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	36	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3971	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.3971	FALSE	499	1288	110	792	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	20	64	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2206	0.7059	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.9265	FALSE	369	2501	205	193	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	SAE1--BBC3	32	13	SAE1	3734	chr19:47634285:+	BBC3	24569	chr19:47730011:-	ONLY_REF_SPLICE	YES	76	3	0.37	0.94	0.353	0.1434	LOCAL_INVERSION:+:-:[10195],SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,BBC3->BCL2_binding_component_3,Oncogene{Bushman},chr19:47724081-47736023:-	HSC2_UPPER_AERODIGESTIVE_TRACT	0.37	0.94	0.4964	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	35	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3861	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.3861	TRUE	519	3926	326	965	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	33	5	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.364	0.0552	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC2_UPPER_AERODIGESTIVE_TRACT	0.9	1	0.4192	FALSE	499	1288	110	792	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	27	29	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2978	0.3199	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.6177	FALSE	369	2501	205	193	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	24	10	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2647	0.1103	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.375	FALSE	462	80	0	856	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	GS1-124K5.12--TMEM248	21	11	GS1-124K5.12	5666	chr7:66038372:-	TMEM248	14236	chr7:66406835:+	ONLY_REF_SPLICE	YES	28	2	0.53	0.94	0.2316	0.1213	GS1-124K5.12->chr7:66010634-66057373:-,TMEM248->chr7:66386212-66423538:+,transmembrane_protein_248	HSC2_UPPER_AERODIGESTIVE_TRACT	0.53	0.94	0.3529	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	12	46	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1324	0.5074	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.6398	FALSE	369	2501	205	193	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	23	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2537	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.2537	FALSE	369	2501	205	193	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	11	41	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1213	0.4522	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.5735	FALSE	369	2501	205	193	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	RP11-123O10.4--GRIP1	18	7	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1985	0.0772	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.2757	FALSE	416	2512	207	587	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	BCAS3--C17orf64	14	18	BCAS3	3605	chr17:58761397:+	C17orf64	62545	chr17:58503144:+	ONLY_REF_SPLICE	YES	16	0	0.67	1	0.1544	0.1985	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,C17orf64->chr17:58469790-58508782:+,chromosome_17_open_reading_frame_64	HSC2_UPPER_AERODIGESTIVE_TRACT	0.67	1	0.3529	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	14	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1544	0.0662	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC2_UPPER_AERODIGESTIVE_TRACT	0.95	1	0.2206	FALSE	499	1288	110	792	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	8	29	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0882	0.3199	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.4081	FALSE	369	2501	205	193	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	NPM1P24--SET	15	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1655	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.1655	TRUE	0	0	0	434	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	ABL2--PREX1	12	8	ABL2	1444	chr1:179198376:-	PREX1	45225	chr20:47276599:-	ONLY_REF_SPLICE	YES	1	2	0.95	0.91	0.1324	0.0882	ABL2->ABL_proto-oncogene_2,_non-receptor_tyrosine_kinase,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr1:179068462-179198819:-,PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1	HSC2_UPPER_AERODIGESTIVE_TRACT	0.91	0.95	0.2206	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	12	3	KRT5	1723	chr12:52913749:-	KRT15	14082	chr17:39674813:-	INCL_NON_REF_SPLICE	YES	6216	200	0	0.07	0.1324	0.0331	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	HSC2_UPPER_AERODIGESTIVE_TRACT	0	0.07	0.1655	TRUE	0	1	1	2	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	12	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	2	1	0.88	0.1324	0.0221	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HSC2_UPPER_AERODIGESTIVE_TRACT	0.88	1	0.1545	TRUE	465	1949	224	605	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	10	8	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.82	1	0.1103	0.0882	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC2_UPPER_AERODIGESTIVE_TRACT	0.82	1	0.1985	FALSE	499	1288	110	792	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	SAE1--BBC3	8	13	SAE1	3734	chr19:47634285:+	BBC3	22877	chr19:47731703:-	ONLY_REF_SPLICE	YES	76	0	0.22	1	0.0882	0.1434	LOCAL_INVERSION:+:-:[10195],SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,BBC3->BCL2_binding_component_3,Oncogene{Bushman},chr19:47724081-47736023:-	HSC2_UPPER_AERODIGESTIVE_TRACT	0.22	1	0.2316	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	ANXA4--SAE1	11	0	ANXA4	6479	chr2:70008706:+	SAE1	35151	chr19:47653459:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1213	0	ANXA4->annexin_A4,chr2:69871557-70053596:+,SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.1213	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	18	MT-ND6	1484	chrM:14190:-	MT-TE	4521	chrM:14747:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0.1985	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.2647	FALSE	499	1288	110	792	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	10	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1103	0.011	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.1213	FALSE	462	80	0	856	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	ANXA4--SAE1	9	2	ANXA4	7567	chr2:70015273:+	SAE1	35151	chr19:47653459:+	ONLY_REF_SPLICE	YES	199	100	0.05	0.1	0.0993	0.0221	ANXA4->annexin_A4,chr2:69871557-70053596:+,SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+	HSC2_UPPER_AERODIGESTIVE_TRACT	0.05	0.1	0.1214	TRUE	0	0	0	1	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	6	14	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0.1544	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.2206	FALSE	462	80	0	856	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	8	4	KRT5	1742	chr12:52913730:-	KRT15	14098	chr17:39674797:-	INCL_NON_REF_SPLICE	YES	6547	230	0	0.05	0.0882	0.0441	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	HSC2_UPPER_AERODIGESTIVE_TRACT	0	0.05	0.1323	TRUE	0	1	1	2	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	ALDOA--KRT17	8	0	ALDOA	7458	chr16:30077230:+	KRT17	15286	chr17:39780815:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0882	0	GTEx&tcga_normals:1/3694=0.03%,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,KRT17->chr17:39775689-39781094:-,keratin_17	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0882	TRUE	0	0	0	10	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	8	0	KRT5	1675	chr12:52913797:-	KRT15	14088	chr17:39674807:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0882	0	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0882	TRUE	0	1	1	2	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	RP11-96H19.1--RP11-446N19.1	7	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.91	1	0.0772	0.0331	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HSC2_UPPER_AERODIGESTIVE_TRACT	0.91	1	0.1103	FALSE	515	4851	409	746	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	HSPBP1--GRK5	7	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0772	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0772	TRUE	1	39	0	134	39	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	6	4	KRT5	1753	chr12:52913719:-	KRT15	14088	chr17:39674807:-	INCL_NON_REF_SPLICE	YES	6750	208	0	0.05	0.0662	0.0441	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	HSC2_UPPER_AERODIGESTIVE_TRACT	0	0.05	0.1103	TRUE	0	1	1	2	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0772	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0772	FALSE	499	1288	110	792	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	6	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0662	FALSE	499	1288	110	792	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	6	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0662	FALSE	369	2501	205	193	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	6	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0662	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0662	FALSE	369	2501	205	193	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	RP11-680G10.1--GSE1	5	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.9	0.0552	0.0441	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HSC2_UPPER_AERODIGESTIVE_TRACT	0.9	1	0.0993	TRUE	458	1351	185	561	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	5	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.28	1	0.0552	0.0221	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HSC2_UPPER_AERODIGESTIVE_TRACT	0.28	1	0.0773	FALSE	164	806	69	479	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	5	1	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0.011	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0662	FALSE	499	1288	110	792	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	5	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0552	0.011	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HSC2_UPPER_AERODIGESTIVE_TRACT	0.86	1	0.0662	FALSE	292	1546	117	613	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	NRIP1--AF127936.7	5	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	12	0	0.33	1	0.0552	0.011	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HSC2_UPPER_AERODIGESTIVE_TRACT	0.33	1	0.0662	FALSE	125	705	46	456	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MED12L--DNAJC25	5	0	MED12L	18793	chr3:150959656:+	DNAJC25	61169	chr9:114409387:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0552	0	MED12L->chr3:150803484-151154860:+,mediator_complex_subunit_12_like,DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0552	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TC	4	4	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0.0441	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0882	FALSE	462	80	0	856	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	5	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0552	FALSE	369	2501	205	193	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	6	MT-ND6	1096	chrM:14578:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0331	0.0662	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC2_UPPER_AERODIGESTIVE_TRACT	0.9	1	0.0993	FALSE	499	1288	110	792	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	PREX1--DUSP12	4	1	PREX1	16002	chr20:47282821:-	DUSP12	46623	chr1:161721445:+	ONLY_REF_SPLICE	YES	2	49	0.71	0.09	0.0441	0.011	PREX1->Oncogene{Bushman},chr20:47240790-47444420:-,phosphatidylinositol-3,4,5-trisphosphate_dependent_Rac_exchange_factor_1,DUSP12->chr1:161719548-161727028:+,dual_specificity_phosphatase_12	HSC2_UPPER_AERODIGESTIVE_TRACT	0.09	0.71	0.0551	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	CTD-2337A12.1--CAST	4	0	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0441	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0441	TRUE	347	1186	183	220	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	JSRP1--RPS28	4	0	JSRP1	1213	chr19:2269546:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0441	TRUE	0	1	0	84	1	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	3	4	KRT5	1750	chr12:52913722:-	KRT15	14106	chr17:39674789:-	INCL_NON_REF_SPLICE	YES	6794	255	0	0.03	0.0331	0.0441	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	HSC2_UPPER_AERODIGESTIVE_TRACT	0	0.03	0.0772	FALSE	0	1	1	2	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0441	FALSE	499	1288	110	792	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	4	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0441	FALSE	369	2501	205	193	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0441	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0441	FALSE	369	2501	205	193	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	KRT5--KRT15	3	3	KRT5	1706	chr12:52913766:-	KRT15	14077	chr17:39674818:-	INCL_NON_REF_SPLICE	YES	5768	196	0	0.03	0.0331	0.0331	GTEx&tcga_normals:62/3694=1.68%,GTEx:1.11%,GTEx_v2:{count=10;pct=0.12%;dist=Esophagus_-_Mucosa=10},KRT5->chr12:52908359-52914471:-,keratin_5,KRT15->chr17:39669995-39678781:-,keratin_15	HSC2_UPPER_AERODIGESTIVE_TRACT	0	0.03	0.0662	FALSE	0	1	1	2	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	SAE1--BBC3	3	3	SAE1	3734	chr19:47634285:+	BBC3	26410	chr19:47725175:-	ONLY_REF_SPLICE	YES	76	15	0.07	0.29	0.0331	0.0331	LOCAL_INVERSION:+:-:[10195],SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+,BBC3->BCL2_binding_component_3,Oncogene{Bushman},chr19:47724081-47736023:-	HSC2_UPPER_AERODIGESTIVE_TRACT	0.07	0.29	0.0662	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	MT-ND6--MT-TE	3	2	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0331	0.0221	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HSC2_UPPER_AERODIGESTIVE_TRACT	0.83	1	0.0552	FALSE	499	1288	110	792	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	CPSF6--C9orf3	2	0	CPSF6	11046	chr12:69656342:+	C9orf3	56686	chr9:97848964:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	GTEx&tcga_normals:7/3694=0.19%,GTEx_FI:{Blood_Vessel=[count:19=pct:5.1],Nerve=[count:17=pct:10.0],Uterus=[count:7=pct:16.3],Esophagus=[count:5=pct:1.2],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:3=pct:1.0],Lung=[count:2=pct:1.2],Testis=[count:1=pct:1.0],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Heart=[count:1=pct:0.4]},GTEx_v2:{count=87;pct=1.01%;dist=Nerve_-_Tibial=19,Artery_-_Tibial=13,Artery_-_Aorta=12,Uterus=8,Prostate=5,Esophagus_-_Mucosa=4,Esophagus_-_Muscularis=4,Lung=3,Artery_-_Coronary=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Adipose_-_Subcutaneous=2,Testis=2,Small_Intestine_-_Terminal_Ileum=1,Breast_-_Mammary_Tissue=1,Vagina=1,Brain_-_Hippocampus=1,Cervix_-_Ectocervix=1,Muscle_-_Skeletal=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},YOSHIHARA_TCGA_num_samples[HNSC:1|LUAD:1],CPSF6->chr12:69633317-69668138:+,cleavage_and_polyadenylation_specific_factor_6,C9orf3->chr9:97488983-97849441:+,chromosome_9_open_reading_frame_3	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0221	TRUE	53	99	2	44	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	KIAA0020--PDSS1	2	0	KIAA0020	1197	chr9:2844045:-	PDSS1	32170	chr10:27024169:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	KIAA0020->chr9:2720469-2844241:-,PDSS1->chr10:26986588-27035727:+,prenyl_(decaprenyl)_diphosphate_synthase,_subunit_1	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	TIMM23--RP11-464F9.1	2	0	TIMM23	1257	chr10:51623109:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0221	TRUE	5	8	0	33	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	TIMM23B--LINC00843	2	0	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HSC2_UPPER_AERODIGESTIVE_TRACT	1	1	0.0221	TRUE	62	24	1	171	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	AC009948.5--OSBPL6	1	2	AC009948.5	5230	chr2:179291388:+	OSBPL6	21487	chr2:179188904:+	ONLY_REF_SPLICE	YES	7	4	0.3	0.43	0.011	0.0221	LOCAL_REARRANGEMENT:+:[14506],AC009948.5->chr2:179278666-179304970:+,OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6	HSC2_UPPER_AERODIGESTIVE_TRACT	0.3	0.43	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	AC009948.5--OSBPL6	1	2	AC009948.5	1175	chr2:179278840:+	OSBPL6	21487	chr2:179188904:+	ONLY_REF_SPLICE	NO	10	4	0.23	0.43	0.011	0.0221	LOCAL_REARRANGEMENT:+:[14506],AC009948.5->chr2:179278666-179304970:+,OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6	HSC2_UPPER_AERODIGESTIVE_TRACT	0.23	0.43	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	AC009948.5--OSBPL6	1	2	AC009948.5	5230	chr2:179291388:+	OSBPL6	22580	chr2:179192983:+	ONLY_REF_SPLICE	YES	7	6	0.3	0.33	0.011	0.0221	LOCAL_REARRANGEMENT:+:[14506],AC009948.5->chr2:179278666-179304970:+,OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6	HSC2_UPPER_AERODIGESTIVE_TRACT	0.3	0.33	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	AC009948.5--OSBPL6	1	2	AC009948.5	5074	chr2:179291232:+	OSBPL6	22580	chr2:179192983:+	ONLY_REF_SPLICE	YES	8	6	0.27	0.33	0.011	0.0221	LOCAL_REARRANGEMENT:+:[14506],AC009948.5->chr2:179278666-179304970:+,OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6	HSC2_UPPER_AERODIGESTIVE_TRACT	0.27	0.33	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	AC009948.5--OSBPL6	1	2	AC009948.5	1175	chr2:179278840:+	OSBPL6	22580	chr2:179192983:+	ONLY_REF_SPLICE	YES	10	6	0.23	0.33	0.011	0.0221	LOCAL_REARRANGEMENT:+:[14506],AC009948.5->chr2:179278666-179304970:+,OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6	HSC2_UPPER_AERODIGESTIVE_TRACT	0.23	0.33	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	AC009948.5--OSBPL6	1	2	AC009948.5	5074	chr2:179291232:+	OSBPL6	21487	chr2:179188904:+	ONLY_REF_SPLICE	YES	8	4	0.27	0.43	0.011	0.0221	LOCAL_REARRANGEMENT:+:[14506],AC009948.5->chr2:179278666-179304970:+,OSBPL6->chr2:179059208-179264160:+,oxysterol_binding_protein_like_6	HSC2_UPPER_AERODIGESTIVE_TRACT	0.27	0.43	0.0331	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	BCAS3--C17orf64	1	1	BCAS3	3605	chr17:58761397:+	C17orf64	64580	chr17:58506723:+	ONLY_REF_SPLICE	YES	16	11	0.11	0.15	0.011	0.011	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,C17orf64->chr17:58469790-58508782:+,chromosome_17_open_reading_frame_64	HSC2_UPPER_AERODIGESTIVE_TRACT	0.11	0.15	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	CBX1--MYL10	1	1	CBX1	1254	chr17:46178630:-	MYL10	16223	chr7:101265480:-	ONLY_REF_SPLICE	YES	141	0	0.01	1	0.011	0.011	CBX1->chr17:46147414-46178883:-,chromobox_1,MYL10->chr7:101256605-101272576:-,myosin_light_chain_10	HSC2_UPPER_AERODIGESTIVE_TRACT	0.01	1	0.022	FALSE	0	0	0	1	0	FALSE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	GS1-124K5.12--TMEM248	1	1	GS1-124K5.12	1130	chr7:66057244:-	TMEM248	14236	chr7:66406835:+	ONLY_REF_SPLICE	YES	19	2	0.1	0.5	0.011	0.011	GS1-124K5.12->chr7:66010634-66057373:-,TMEM248->chr7:66386212-66423538:+,transmembrane_protein_248	HSC2_UPPER_AERODIGESTIVE_TRACT	0.1	0.5	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	RPA3-AS1--TMIGD1	1	1	RPA3-AS1	4247	chr7:7715839:+	TMIGD1	20399	chr17:28656547:-	ONLY_REF_SPLICE	YES	38	0	0.05	1	0.011	0.011	RPA3-AS1->chr7:7680342-8043689:+,TMIGD1->chr17:28643351-28661077:-,transmembrane_and_immunoglobulin_domain_containing_1	HSC2_UPPER_AERODIGESTIVE_TRACT	0.05	1	0.022	TRUE	0	0	0	1	0	TRUE	ACH-000472
HSC2_UPPER_AERODIGESTIVE_TRACT	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	NO	19	0	0.1	1	0.011	0.011	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HSC2_UPPER_AERODIGESTIVE_TRACT	0.1	1	0.022	FALSE	272	151	14	158	0	FALSE	ACH-000472
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--IGKJ5	2211	6	IGKV4-1	1756	chr2:89185668:+	IGKJ5	4758	chr2:89160117:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	21.9554	0.0596	GTEx_FI:{Blood_Vessel=[count:7=pct:1.9],Blood=[count:5=pct:2.9],Thyroid=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Stomach=[count:3=pct:3.4],Lung=[count:3=pct:1.8],Breast=[count:2=pct:1.8],Adipose_Tissue=[count:2=pct:0.7],Esophagus=[count:2=pct:0.5],Bladder=[count:1=pct:11.1],Salivary_Gland=[count:1=pct:2.6],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},HGNC_GENEFAM,LOCAL_INVERSION:+:-:[24796],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,IGKJ5->chr2:89160080-89160117:-,immunoglobulin_kappa_joining_5	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	22.015	FALSE	34	267	14	1	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--AC096579.13	2151	24	IGKV3-20	1586	chr2:89442058:-	AC096579.13	4589	chr2:89161074:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	21.3596	0.2383	GTEx_FI:{Lung=[count:2=pct:1.2],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Ovary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2]},IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,AC096579.13->chr2:89109984-89161075:-	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	21.5979	TRUE	11	319	19	3	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--AC096579.7	22	5118	IGKV4-1	1752	chr2:89185664:+	AC096579.7	6437	chr2:89161439:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2185	50.8222	GTEx_FI:{Lung=[count:127=pct:76.0],Spleen=[count:111=pct:99.1],Blood=[count:103=pct:59.2],Colon=[count:92=pct:48.2],Whole_Blood=[count:90=pct:68.2],Esophagus=[count:72=pct:17.8],Blood_Vessel=[count:60=pct:16.3],Stomach=[count:59=pct:66.3],Adipose_Tissue=[count:54=pct:18.1],Breast=[count:49=pct:44.1],Small_Intestine=[count:48=pct:87.3],Liver=[count:46=pct:38.0],Thyroid=[count:41=pct:23.2],Salivary_Gland=[count:33=pct:84.6],Vagina=[count:18=pct:32.7],Pancreas=[count:14=pct:7.7],Prostate=[count:14=pct:23.0],Nerve=[count:12=pct:7.1],Skin=[count:12=pct:3.8],Uterus=[count:6=pct:14.0],Ovary=[count:6=pct:11.3],Kidney=[count:5=pct:35.7],Heart=[count:5=pct:2.0],Adrenal_Gland=[count:4=pct:4.7],Muscle=[count:3=pct:1.3],Testis=[count:3=pct:2.9],Fallopian_Tube=[count:3=pct:50.0],Bladder=[count:3=pct:33.3],Cervix_Uteri=[count:2=pct:25.0],Brain=[count:2=pct:0.3],Pituitary=[count:2=pct:3.8]},LOCAL_INVERSION:+:-:[19260],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,AC096579.7->chr2:89130700-89165653:-	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	51.0407	TRUE	409	2595	228	2	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--AC096579.7	11	5118	IGKV4-1	1756	chr2:89185668:+	AC096579.7	6441	chr2:89161435:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1092	50.8222	GTEx_FI:{Lung=[count:127=pct:76.0],Spleen=[count:111=pct:99.1],Blood=[count:103=pct:59.2],Colon=[count:92=pct:48.2],Whole_Blood=[count:90=pct:68.2],Esophagus=[count:72=pct:17.8],Blood_Vessel=[count:60=pct:16.3],Stomach=[count:59=pct:66.3],Adipose_Tissue=[count:54=pct:18.1],Breast=[count:49=pct:44.1],Small_Intestine=[count:48=pct:87.3],Liver=[count:46=pct:38.0],Thyroid=[count:41=pct:23.2],Salivary_Gland=[count:33=pct:84.6],Vagina=[count:18=pct:32.7],Pancreas=[count:14=pct:7.7],Prostate=[count:14=pct:23.0],Nerve=[count:12=pct:7.1],Skin=[count:12=pct:3.8],Uterus=[count:6=pct:14.0],Ovary=[count:6=pct:11.3],Kidney=[count:5=pct:35.7],Heart=[count:5=pct:2.0],Adrenal_Gland=[count:4=pct:4.7],Muscle=[count:3=pct:1.3],Testis=[count:3=pct:2.9],Fallopian_Tube=[count:3=pct:50.0],Bladder=[count:3=pct:33.3],Cervix_Uteri=[count:2=pct:25.0],Brain=[count:2=pct:0.3],Pituitary=[count:2=pct:3.8]},LOCAL_INVERSION:+:-:[19260],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,AC096579.7->chr2:89130700-89165653:-	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	50.9314	TRUE	409	2595	228	2	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--IGKJ5	255	6	IGKV4-1	1752	chr2:89185664:+	IGKJ5	4754	chr2:89160121:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.5322	0.0596	GTEx_FI:{Blood_Vessel=[count:7=pct:1.9],Blood=[count:5=pct:2.9],Thyroid=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Stomach=[count:3=pct:3.4],Lung=[count:3=pct:1.8],Breast=[count:2=pct:1.8],Adipose_Tissue=[count:2=pct:0.7],Esophagus=[count:2=pct:0.5],Bladder=[count:1=pct:11.1],Salivary_Gland=[count:1=pct:2.6],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},HGNC_GENEFAM,LOCAL_INVERSION:+:-:[24796],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,IGKJ5->chr2:89160080-89160117:-,immunoglobulin_kappa_joining_5	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.5918	FALSE	34	267	14	1	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	108	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	1.0724	0.2085	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	1.2809	TRUE	508	994	45	981	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERICH1--TDRP	93	24	ERICH1	3570	chr8:665861:-	TDRP	29551	chr8:444597:-	ONLY_REF_SPLICE	YES	40	0	0.75	1	0.9235	0.2383	NEIGHBORS[68965],ERICH1->Oncogene{Bushman},chr8:564746-688106:-,glutamate_rich_1,TDRP->chr8:439803-495781:-,testis_development_related_protein	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	1.1618	FALSE	0	0	0	1	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	71	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.705	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.705	TRUE	0	0	0	518	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	64	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	169	5	0.28	0.93	0.6355	0.0099	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.93	0.6454	TRUE	519	3926	326	965	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	37	13	PTMA	6054	chr2:232576687:+	ANP32B	17703	chr9:100773556:+	INCL_NON_REF_SPLICE	YES	4568	992	0.01	0.05	0.3674	0.1291	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.4965	TRUE	0	0	0	4	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC019118.3--AC019118.2	36	14	AC019118.3	1234	chr2:3149318:-	AC019118.2	8492	chr2:2970447:-	ONLY_REF_SPLICE	YES	15	1	0.77	0.98	0.3575	0.139	NEIGHBORS[5555],AC019118.3->chr2:3135353-3149551:-,AC019118.2->chr2:2898820-3129798:-	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.77	0.98	0.4965	FALSE	0	0	0	3	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	30	7	PTMA	6054	chr2:232576687:+	ANP32B	17763	chr9:100773616:+	INCL_NON_REF_SPLICE	YES	4568	863	0.01	0.04	0.2979	0.0695	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.3674	TRUE	0	0	0	4	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	25	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2483	0.0695	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3178	FALSE	499	1288	110	792	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	24	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	33	1326	0.43	0.02	0.2383	0.0099	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.43	0.2482	TRUE	0	0	0	434	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	17	25	PTMA	6593	chr2:232577226:+	ANP32B	17714	chr9:100773567:+	INCL_NON_REF_SPLICE	YES	4940	896	0.01	0.04	0.1688	0.2483	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.04	0.4171	TRUE	0	0	0	4	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	22	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2185	0.0099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2284	FALSE	462	80	0	856	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	16	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.91	1	0.1589	0.0397	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.91	1	0.1986	FALSE	499	1288	110	792	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	13	9	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1291	0.0894	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2185	FALSE	499	1288	110	792	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	15	0	PTMA	6024	chr2:232576657:+	ANP32B	19883	chr9:100777658:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.149	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.149	TRUE	0	0	0	3	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	12	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3434	0	0	1	0.1192	0.0099	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.1291	FALSE	13	9	0	364	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	12	0	PTMA	6054	chr2:232576687:+	ANP32B	19883	chr9:100777658:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1192	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1192	TRUE	0	0	0	3	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	10	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0993	0.0397	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.139	FALSE	416	2512	207	587	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	4	25	PTMA	6597	chr2:232577230:+	ANP32B	17706	chr9:100773559:+	INCL_NON_REF_SPLICE	YES	5573	971	0.01	0.03	0.0397	0.2483	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.03	0.288	TRUE	0	0	0	4	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NIPA2--POLA1	10	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0993	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0993	TRUE	46	1352	75	139	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	5	17	PTMA	6593	chr2:232577226:+	ANP32B	17795	chr9:100773648:+	INCL_NON_REF_SPLICE	YES	4940	829	0	0.03	0.0497	0.1688	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.2185	TRUE	0	0	0	4	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV3-20--AC096579.13	3	24	IGKV3-20	1585	chr2:89442059:-	AC096579.13	4588	chr2:89161075:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0.2383	GTEx_FI:{Lung=[count:2=pct:1.2],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Ovary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3],Esophagus=[count:1=pct:0.2]},IGKV3-20->chr2:89442057-89442643:-,immunoglobulin_kappa_variable_3-20,AC096579.13->chr2:89109984-89161075:-	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2681	TRUE	11	319	19	3	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	18	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0.1787	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2184	FALSE	499	1288	110	792	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	7	1	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0695	0.0099	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0794	FALSE	462	80	0	856	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	3	17	PTMA	6531	chr2:232577164:+	ANP32B	10814	chr9:100745838:+	INCL_NON_REF_SPLICE	NO	4186	552	0	0.03	0.0298	0.1688	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.1986	FALSE	0	0	0	1	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	7	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0695	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0695	TRUE	477	1352	189	275	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	3	14	PTMA	6542	chr2:232577175:+	ANP32B	17726	chr9:100773579:+	INCL_NON_REF_SPLICE	YES	4132	851	0	0.02	0.0298	0.139	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.1688	TRUE	0	0	0	4	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	4	10	PTMA	6065	chr2:232576698:+	ANP32B	17741	chr9:100773594:+	INCL_NON_REF_SPLICE	YES	5121	914	0	0.02	0.0397	0.0993	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.139	TRUE	0	0	0	4	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3497	0	0	1	0.0596	0.0099	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	1	0.0695	FALSE	13	9	0	364	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	4	9	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	1	0	0.93	1	0.0397	0.0894	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.93	1	0.1291	FALSE	499	1288	110	792	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC096579.7--IGKV4-1	6	0	AC096579.7	3828	chr2:89157090:-	IGKV4-1	8932	chr2:89185420:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0596	0	LOCAL_INVERSION:-:+:[19260],AC096579.7->chr2:89130700-89165653:-,IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0596	TRUE	0	11	0	1	8	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ANP32B--SEPT7	6	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0596	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0596	TRUE	1	1	0	18	1	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC019118.3--AC019118.2	2	15	AC019118.3	1234	chr2:3149318:-	AC019118.2	7131	chr2:3129427:-	ONLY_REF_SPLICE	YES	15	2	0.53	0.89	0.0199	0.149	NEIGHBORS[5555],AC019118.3->chr2:3135353-3149551:-,AC019118.2->chr2:2898820-3129798:-	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.53	0.89	0.1689	FALSE	0	0	0	2	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--AC096579.7	1	19	IGKV4-1	1224	chr2:89185136:+	AC096579.7	7479	chr2:89157196:-	ONLY_REF_SPLICE	YES	193	0	0.09	1	0.0099	0.1887	GTEx_FI:{Lung=[count:127=pct:76.0],Spleen=[count:111=pct:99.1],Blood=[count:103=pct:59.2],Colon=[count:92=pct:48.2],Whole_Blood=[count:90=pct:68.2],Esophagus=[count:72=pct:17.8],Blood_Vessel=[count:60=pct:16.3],Stomach=[count:59=pct:66.3],Adipose_Tissue=[count:54=pct:18.1],Breast=[count:49=pct:44.1],Small_Intestine=[count:48=pct:87.3],Liver=[count:46=pct:38.0],Thyroid=[count:41=pct:23.2],Salivary_Gland=[count:33=pct:84.6],Vagina=[count:18=pct:32.7],Pancreas=[count:14=pct:7.7],Prostate=[count:14=pct:23.0],Nerve=[count:12=pct:7.1],Skin=[count:12=pct:3.8],Uterus=[count:6=pct:14.0],Ovary=[count:6=pct:11.3],Kidney=[count:5=pct:35.7],Heart=[count:5=pct:2.0],Adrenal_Gland=[count:4=pct:4.7],Muscle=[count:3=pct:1.3],Testis=[count:3=pct:2.9],Fallopian_Tube=[count:3=pct:50.0],Bladder=[count:3=pct:33.3],Cervix_Uteri=[count:2=pct:25.0],Brain=[count:2=pct:0.3],Pituitary=[count:2=pct:3.8]},LOCAL_INVERSION:+:-:[19260],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,AC096579.7->chr2:89130700-89165653:-	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.1986	TRUE	246	1363	131	3	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	5	1	PTMA	6002	chr2:232576635:+	ANP32B	17714	chr9:100773567:+	INCL_NON_REF_SPLICE	YES	4577	896	0	0.01	0.0497	0.0099	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0596	FALSE	0	0	0	4	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	5	0	PTMA	6042	chr2:232576675:+	ANP32B	18817	chr9:100774701:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0497	TRUE	0	0	0	3	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--EEF1D	5	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0497	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0497	TRUE	1	10	0	18	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV3L--RPL28	5	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0497	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0497	TRUE	22	156	2	142	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	1	15	PTMA	6060	chr2:232576693:+	ANP32B	17700	chr9:100773553:+	ONLY_REF_SPLICE	NO	4971	1021	0	0.02	0.0099	0.149	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.1589	TRUE	0	0	0	4	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV4-1--IGKJ5	3	6	IGKV4-1	1755	chr2:89185667:+	IGKJ5	4757	chr2:89160118:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0.0596	GTEx_FI:{Blood_Vessel=[count:7=pct:1.9],Blood=[count:5=pct:2.9],Thyroid=[count:4=pct:2.3],Whole_Blood=[count:4=pct:3.0],Stomach=[count:3=pct:3.4],Lung=[count:3=pct:1.8],Breast=[count:2=pct:1.8],Adipose_Tissue=[count:2=pct:0.7],Esophagus=[count:2=pct:0.5],Bladder=[count:1=pct:11.1],Salivary_Gland=[count:1=pct:2.6],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},HGNC_GENEFAM,LOCAL_INVERSION:+:-:[24796],IGKV4-1->chr2:89184913-89185669:+,immunoglobulin_kappa_variable_4-1,IGKJ5->chr2:89160080-89160117:-,immunoglobulin_kappa_joining_5	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0894	FALSE	34	267	14	1	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	4	1	PTMA	6542	chr2:232577175:+	ANP32B	18858	chr9:100774742:+	INCL_NON_REF_SPLICE	YES	4132	594	0	0.01	0.0397	0.0099	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0496	FALSE	0	0	0	3	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TC	4	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0397	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0397	FALSE	462	80	0	856	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TCF3--MT-ATP6	3	3	TCF3	10260	chr19:1622370:-	MT-ATP6	22135	chrM:8573:+	INCL_NON_REF_SPLICE	YES	344	0	0.02	1	0.0298	0.0298	TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0596	FALSE	0	0	0	1	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	2	NPM1P24	1536	chr10:74677757:-	SET	12295	chr9:131456190:+	INCL_NON_REF_SPLICE	YES	33	1306	0.13	0	0.0298	0.0199	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.13	0.0497	FALSE	0	0	0	434	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	2	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	33	1211	0.13	0	0.0298	0.0199	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.13	0.0497	FALSE	0	0	0	434	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	33	1107	0.11	0	0.0298	0.0099	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.11	0.0397	FALSE	0	0	0	434	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTMA--ANP32B	3	1	PTMA	6530	chr2:232577163:+	ANP32B	19870	chr9:100777645:+	INCL_NON_REF_SPLICE	YES	4180	561	0	0.01	0.0298	0.0099	PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha,ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0397	FALSE	0	0	0	3	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ERICH1--TDRP	3	0	ERICH1	2423	chr8:681140:-	TDRP	29551	chr8:444597:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0298	0	NEIGHBORS[68965],ERICH1->Oncogene{Bushman},chr8:564746-688106:-,glutamate_rich_1,TDRP->chr8:439803-495781:-,testis_development_related_protein	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0298	FALSE	0	0	0	1	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0298	FALSE	499	1288	110	792	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0298	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0298	FALSE	499	1288	110	792	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	COX7A2L--MTA3	2	0	COX7A2L	8717	chr2:42588230:-	MTA3	29516	chr2:42867313:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	LOCAL_INVERSION:-:+:[69481],COX7A2L->chr2:42560686-42652228:-,cytochrome_c_oxidase_subunit_7A2_like,MTA3->Oncogene{Bushman},chr2:42721709-42984087:+,metastasis_associated_1_family_member_3	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGLL5--CHMP1A	2	0	IGLL5	1480	chr22:23230439:+	CHMP1A	12113	chr16:89713739:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},IGLL5->chr22:23229960-23238287:+,immunoglobulin_lambda_like_polypeptide_5,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	1	0	2	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MON1A--TCP1	2	0	MON1A	1565	chr3:49967042:-	TCP1	19665	chr6:160201119:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	MON1A->MON1_homolog_A,_secretory_trafficking_associated,chr3:49946302-49967606:-,TCP1->chr6:160199530-160210781:-,t-complex_1	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RIMKLB--USP14	2	0	RIMKLB	6401	chr12:8866637:+	USP14	29961	chr18:196637:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	RIMKLB->chr12:8834196-8935691:+,ribosomal_modification_protein_rimK-like_family_member_B,USP14->chr18:158383-214629:+,ubiquitin_specific_peptidase_14	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEC24B--LEF1	2	0	SEC24B	14317	chr4:110437796:+	LEF1	49033	chr4:108969907:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	SEC24B->SEC24_homolog_B,_COPII_coat_complex_component,chr4:110354928-110462052:+,LEF1->Oncogene{Bushman},chr4:108968701-109090112:-,lymphoid_enhancer_binding_factor_1	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEPHS1--CORO1C	2	0	SEPHS1	11595	chr10:13364835:-	CORO1C	22594	chr12:109095099:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	SEPHS1->chr10:13359424-13390297:-,selenophosphate_synthetase_1,CORO1C->Oncogene{Bushman},chr12:109038885-109125372:-,coronin_1C	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ULK3--EWSR1	2	0	ULK3	6596	chr15:75130092:-	EWSR1	31403	chr22:29695589:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	ULK3->chr15:75128457-75135687:-,unc-51_like_kinase_3,EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	0	0	0	1	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WDR41--TBCA	2	0	WDR41	7042	chr5:76785282:-	TBCA	32720	chr5:77004172:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0199	0	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Gastroesophageal_Junction=1},LOCAL_REARRANGEMENT:-:[70555],WDR41->WD_repeat_domain_41,chr5:76721795-76916436:-,TBCA->chr5:76986991-77164604:-,tubulin_folding_cofactor_A	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0199	TRUE	1	1	0	3	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC019118.3--AC019118.2	1	2	AC019118.3	1234	chr2:3149318:-	AC019118.2	10978	chr2:2900452:-	ONLY_REF_SPLICE	YES	15	7	0.17	0.3	0.0099	0.0199	NEIGHBORS[5555],AC019118.3->chr2:3135353-3149551:-,AC019118.2->chr2:2898820-3129798:-	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.17	0.3	0.0298	FALSE	0	0	0	3	0	FALSE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MRPS17--CLIP2	1	1	MRPS17	2531	chr7:55974072:+	CLIP2	15529	chr7:73731810:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0099	0.0099	MRPS17->chr7:55954970-56022932:+,chr7:56019512-56024192:+,mitochondrial_ribosomal_protein_S17,CLIP2->CAP-Gly_domain_containing_linker_protein_2,chr7:73703805-73820273:+	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0198	TRUE	0	0	0	1	0	TRUE	ACH-000245
BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RPL23--SEL1L3	1	1	RPL23	1822	chr17:37009275:-	SEL1L3	13097	chr4:25849486:-	ONLY_REF_SPLICE	YES	830	60	0	0.03	0.0099	0.0099	RPL23->chr17:37004118-37010096:-,ribosomal_protein_L23,SEL1L3->SEL1L_family_member_3,chr4:25749055-25865382:-	BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.03	0.0198	FALSE	0	0	0	1	0	FALSE	ACH-000245
HS343T_FIBROBLAST	TIMM23B--LINC00843	77	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9129	0.2964	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS343T_FIBROBLAST	1	1	1.2093	TRUE	508	994	45	981	0	FALSE	ACH-000184
HS343T_FIBROBLAST	ATAD2--NCL	45	0	ATAD2	8977	chr8:124382155:-	NCL	40558	chr2:232325488:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5335	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Artery_-_Tibial=1},ATAD2->ATPase_family,_AAA_domain_containing_2,chr8:124332090-124428590:-,NCL->chr2:232318242-232348352:-,nucleolin	HS343T_FIBROBLAST	1	1	0.5335	TRUE	0	0	0	2	0	TRUE	ACH-000184
HS343T_FIBROBLAST	VIM-AS1--FN1	42	8	VIM-AS1	1257	chr10:17271728:-	FN1	9932	chr2:216300758:-	INCL_NON_REF_SPLICE	NO	9692	3	0.01	0.94	0.4979	0.0948	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS343T_FIBROBLAST	0.01	0.94	0.5927	FALSE	0	0	0	2	0	FALSE	ACH-000184
HS343T_FIBROBLAST	TIMM23--RP11-464F9.1	38	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4505	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS343T_FIBROBLAST	1	1	0.4505	TRUE	519	3926	326	965	0	FALSE	ACH-000184
HS343T_FIBROBLAST	MT-ND6--MT-ND5	37	2	MT-ND6	1499	chrM:14175:-	MT-ND5	6273	chrM:14084:+	INCL_NON_REF_SPLICE	YES	0	1278	1	0.03	0.4387	0.0237	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS343T_FIBROBLAST	0.03	1	0.4624	FALSE	101	855	57	72	0	FALSE	ACH-000184
HS343T_FIBROBLAST	KANSL1--ARL17B	21	19	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	14	34	0.74	0.54	0.249	0.2253	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HS343T_FIBROBLAST	0.54	0.74	0.4743	TRUE	181	1564	124	196	0	FALSE	ACH-000184
HS343T_FIBROBLAST	VIM-AS1--FN1	21	8	VIM-AS1	1257	chr10:17271728:-	FN1	9929	chr2:216300761:-	INCL_NON_REF_SPLICE	NO	9692	2	0	0.94	0.249	0.0948	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS343T_FIBROBLAST	0	0.94	0.3438	FALSE	0	0	0	2	0	FALSE	ACH-000184
HS343T_FIBROBLAST	MT-ND6--MT-TE	22	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2608	0.0356	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS343T_FIBROBLAST	1	1	0.2964	FALSE	499	1288	110	792	0	FALSE	ACH-000184
HS343T_FIBROBLAST	COL1A2--FN1	11	41	COL1A2	22352	chr7:94049871:+	FN1	36441	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	9250	8809	0.01	0.01	0.1304	0.4861	GTEx&tcga_normals:10/3694=0.27%,GTEx:0.03%,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS343T_FIBROBLAST	0.01	0.01	0.6165	TRUE	0	0	0	1	0	FALSE	ACH-000184
HS343T_FIBROBLAST	RP11-680G10.1--GSE1	18	7	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	3	1	0.89	0.2134	0.083	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS343T_FIBROBLAST	0.89	1	0.2964	TRUE	458	1351	185	561	0	FALSE	ACH-000184
HS343T_FIBROBLAST	RP11-680G10.1--GSE1	19	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	15	1	0.59	0.2253	0.0356	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS343T_FIBROBLAST	0.59	1	0.2609	TRUE	465	1949	224	605	0	FALSE	ACH-000184
HS343T_FIBROBLAST	PLXDC1--TAF13	17	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2015	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS343T_FIBROBLAST	1	1	0.2015	TRUE	7	10	0	216	0	FALSE	ACH-000184
HS343T_FIBROBLAST	MT-ND6--MT-TE	15	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1778	0.0356	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS343T_FIBROBLAST	1	1	0.2134	FALSE	499	1288	110	792	0	FALSE	ACH-000184
HS343T_FIBROBLAST	COL1A2--FN1	3	42	COL1A2	23728	chr7:94051247:+	FN1	36441	chr2:216300480:-	INCL_NON_REF_SPLICE	YES	11836	8809	0	0.01	0.0356	0.4979	GTEx&tcga_normals:10/3694=0.27%,GTEx:0.03%,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS343T_FIBROBLAST	0	0.01	0.5335	TRUE	0	0	0	3	0	FALSE	ACH-000184
HS343T_FIBROBLAST	COL1A2--FN1	4	25	COL1A2	18261	chr7:94045780:+	FN1	37476	chr2:216299445:-	INCL_NON_REF_SPLICE	YES	9794	9795	0	0	0.0474	0.2964	GTEx&tcga_normals:10/3694=0.27%,GTEx:0.03%,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS343T_FIBROBLAST	0	0	0.3438	TRUE	0	0	0	1	0	FALSE	ACH-000184
HS343T_FIBROBLAST	MIPEPP3--ABHD12	10	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1186	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	HS343T_FIBROBLAST	1	1	0.1186	TRUE	64	202	9	44	0	FALSE	ACH-000184
HS343T_FIBROBLAST	VIM-AS1--FN1	10	0	VIM-AS1	1083	chr10:17271902:-	FN1	45686	chr2:216244042:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1186	0	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS343T_FIBROBLAST	1	1	0.1186	TRUE	0	0	0	1	0	TRUE	ACH-000184
HS343T_FIBROBLAST	MT-ND6--MT-TE	7	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.86	1	0.083	0.1304	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS343T_FIBROBLAST	0.86	1	0.2134	FALSE	499	1288	110	792	0	FALSE	ACH-000184
HS343T_FIBROBLAST	COL1A2--FN1	3	21	COL1A2	22372	chr7:94049891:+	FN1	58132	chr2:216262541:-	INCL_NON_REF_SPLICE	YES	9392	8780	0	0	0.0356	0.249	GTEx&tcga_normals:10/3694=0.27%,GTEx:0.03%,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS343T_FIBROBLAST	0	0	0.2846	TRUE	0	0	0	1	0	FALSE	ACH-000184
HS343T_FIBROBLAST	COL1A2--FN1	1	28	COL1A2	23745	chr7:94051264:+	FN1	50999	chr2:216274837:-	ONLY_REF_SPLICE	YES	12178	11951	0	0	0.0119	0.332	GTEx&tcga_normals:10/3694=0.27%,GTEx:0.03%,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS343T_FIBROBLAST	0	0	0.3439	TRUE	0	0	0	1	0	FALSE	ACH-000184
HS343T_FIBROBLAST	MT-CO1--COL3A1	7	1	MT-CO1	1605	chrM:6508:+	COL3A1	28798	chr2:189872273:+	INCL_NON_REF_SPLICE	YES	12907	3345	0	0	0.083	0.0119	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	HS343T_FIBROBLAST	0	0	0.0949	FALSE	0	0	0	12	0	FALSE	ACH-000184
HS343T_FIBROBLAST	C15orf57--CBX3	4	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	31	21	0.3	0.38	0.0474	0.1067	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS343T_FIBROBLAST	0.3	0.38	0.1541	TRUE	267	562	48	632	0	FALSE	ACH-000184
HS343T_FIBROBLAST	C15orf57--CBX3	4	9	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	33	21	0.28	0.38	0.0474	0.1067	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS343T_FIBROBLAST	0.28	0.38	0.1541	TRUE	267	562	48	632	0	FALSE	ACH-000184
HS343T_FIBROBLAST	VIM-AS1--FN1	4	8	VIM-AS1	1699	chr10:17271286:-	FN1	36622	chr2:216256403:-	INCL_NON_REF_SPLICE	YES	1	13093	0.92	0	0.0474	0.0948	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS343T_FIBROBLAST	0	0.92	0.1422	TRUE	0	0	0	1	0	FALSE	ACH-000184
HS343T_FIBROBLAST	RP11-334E6.12--MT2A	5	3	RP11-334E6.12	2039	chr11:119289699:+	MT2A	5557	chr16:56642503:+	INCL_NON_REF_SPLICE	YES	299	2	0.03	0.8	0.0593	0.0356	RP11-334E6.12->chr11:119288661-119289824:+,MT2A->chr16:56642111-56643409:+,metallothionein_2A	HS343T_FIBROBLAST	0.03	0.8	0.0949	TRUE	0	0	0	7	0	FALSE	ACH-000184
HS343T_FIBROBLAST	MT-ND6--MT-TE	3	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0.1186	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS343T_FIBROBLAST	1	1	0.1542	FALSE	499	1288	110	792	0	FALSE	ACH-000184
HS343T_FIBROBLAST	PRR16--CTD-2334D19.1	4	4	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	63	0	0.11	1	0.0474	0.0474	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS343T_FIBROBLAST	0.11	1	0.0948	FALSE	56	216	12	147	0	FALSE	ACH-000184
HS343T_FIBROBLAST	RP1-34H18.1--NAV3	5	0	RP1-34H18.1	2982	chr12:77966046:+	NAV3	7844	chr12:78334099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0593	0	GTEx_FI:{Brain=[count:213=pct:32.3],Adipose_Tissue=[count:64=pct:21.5],Nerve=[count:60=pct:35.3],Ovary=[count:34=pct:64.2],Skin=[count:31=pct:9.8],Breast=[count:30=pct:27.0],Blood_Vessel=[count:19=pct:5.1],Pituitary=[count:13=pct:25.0],Lung=[count:11=pct:6.6],Thyroid=[count:10=pct:5.6],Heart=[count:10=pct:4.0],Esophagus=[count:6=pct:1.5],Muscle=[count:6=pct:2.6],Uterus=[count:4=pct:9.3],Testis=[count:3=pct:2.9],Vagina=[count:3=pct:5.5],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Pancreas=[count:2=pct:1.1],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Salivary_Gland=[count:1=pct:2.6],Bladder=[count:1=pct:11.1]},RP1-34H18.1->chr12:77718421-77966055:+,NAV3->chr12:78224685-78606790:+,neuron_navigator_3	HS343T_FIBROBLAST	1	1	0.0593	TRUE	254	575	65	124	0	FALSE	ACH-000184
HS343T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	4	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0474	0.0474	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS343T_FIBROBLAST	1	1	0.0948	FALSE	407	2205	196	549	0	FALSE	ACH-000184
HS343T_FIBROBLAST	COL1A2--FN1	4	1	COL1A2	11274	chr7:94038659:+	FN1	75478	chr2:216239981:-	INCL_NON_REF_SPLICE	YES	9218	13721	0	0	0.0474	0.0119	GTEx&tcga_normals:10/3694=0.27%,GTEx:0.03%,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS343T_FIBROBLAST	0	0	0.0593	FALSE	0	0	0	2	0	FALSE	ACH-000184
HS343T_FIBROBLAST	MT-ND6--MT-ND5	3	4	MT-ND6	1530	chrM:14144:-	MT-ND5	6194	chrM:14005:+	INCL_NON_REF_SPLICE	NO	0	2208	1	0	0.0356	0.0474	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS343T_FIBROBLAST	0	1	0.083	FALSE	101	855	57	72	0	FALSE	ACH-000184
HS343T_FIBROBLAST	MT-ND6--MT-ND5	3	4	MT-ND6	1540	chrM:14134:-	MT-ND5	6183	chrM:13994:+	INCL_NON_REF_SPLICE	YES	0	2300	1	0	0.0356	0.0474	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS343T_FIBROBLAST	0	1	0.083	FALSE	101	855	57	72	0	FALSE	ACH-000184
HS343T_FIBROBLAST	MT-ND6--MT-ND5	4	0	MT-ND6	1346	chrM:14328:-	MT-ND5	6277	chrM:14088:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS343T_FIBROBLAST	1	1	0.0474	FALSE	101	855	57	72	0	FALSE	ACH-000184
HS343T_FIBROBLAST	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0474	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS343T_FIBROBLAST	1	1	0.0474	FALSE	499	1288	110	792	0	FALSE	ACH-000184
HS343T_FIBROBLAST	VIM-AS1--FN1	3	4	VIM-AS1	1128	chr10:17271857:-	FN1	9944	chr2:216300746:-	INCL_NON_REF_SPLICE	YES	5224	3	0	0.7	0.0356	0.0474	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	HS343T_FIBROBLAST	0	0.7	0.083	FALSE	0	0	0	2	0	FALSE	ACH-000184
HS343T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.75	0.0356	0.0356	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS343T_FIBROBLAST	0.75	1	0.0712	FALSE	515	4851	409	746	0	FALSE	ACH-000184
HS343T_FIBROBLAST	MT-ND6--MT-ND5	3	2	MT-ND6	1446	chrM:14228:-	MT-ND5	6270	chrM:14081:+	INCL_NON_REF_SPLICE	NO	2	1218	0.71	0	0.0356	0.0237	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS343T_FIBROBLAST	0	0.71	0.0593	FALSE	101	855	57	72	0	FALSE	ACH-000184
HS343T_FIBROBLAST	MT-ND6--MT-ND5	3	2	MT-ND6	1498	chrM:14176:-	MT-ND5	6272	chrM:14083:+	INCL_NON_REF_SPLICE	YES	0	1245	1	0	0.0356	0.0237	HGNC_GENEFAM,LOCAL_INVERSION:-:+:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5	HS343T_FIBROBLAST	0	1	0.0593	FALSE	101	855	57	72	0	FALSE	ACH-000184
HS343T_FIBROBLAST	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0356	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS343T_FIBROBLAST	1	1	0.0356	FALSE	499	1288	110	792	0	FALSE	ACH-000184
HS343T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.86	1	0.0119	0.0593	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS343T_FIBROBLAST	0.86	1	0.0712	FALSE	192	492	57	212	0	FALSE	ACH-000184
HS343T_FIBROBLAST	DAPK1--SMC5	2	0	DAPK1	21558	chr9:90283589:+	SMC5	59836	chr9:72967107:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx&tcga_normals:1/3694=0.03%,DAPK1->Oncogene{Bushman},chr9:90112143-90323548:+,death_associated_protein_kinase_1,SMC5->chr9:72873937-72969804:+,structural_maintenance_of_chromosomes_5	HS343T_FIBROBLAST	1	1	0.0237	TRUE	0	0	0	1	0	TRUE	ACH-000184
HS343T_FIBROBLAST	FNBP4--NUP160	2	0	FNBP4	2468	chr11:47786822:-	NUP160	29772	chr11:47859175:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	LOCAL_REARRANGEMENT:-:[10644],FNBP4->Oncogene{Bushman},chr11:47738072-47788995:-,formin_binding_protein_4,NUP160->chr11:47799639-47870107:-,nucleoporin_160kDa	HS343T_FIBROBLAST	1	1	0.0237	TRUE	0	0	0	6	0	TRUE	ACH-000184
HS343T_FIBROBLAST	LRP5--C11orf24	2	0	LRP5	6121	chr11:68133170:+	C11orf24	35199	chr11:68035719:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0237	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_INVERSION:+:-:[40608],LRP5->LDL_receptor_related_protein_5,Oncogene{Bushman},chr11:68080077-68216743:+,C11orf24->chr11:68028803-68039469:-,chromosome_11_open_reading_frame_24	HS343T_FIBROBLAST	1	1	0.0237	TRUE	0	2	0	3	1	TRUE	ACH-000184
HS343T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.83	0.71	0.0119	0.0474	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS343T_FIBROBLAST	0.71	0.83	0.0593	FALSE	467	2173	244	435	0	FALSE	ACH-000184
HS343T_FIBROBLAST	GPR107--ABL1	1	1	GPR107	1648	chr9:132816352:+	ABL1	37040	chr9:133738150:+	ONLY_REF_SPLICE	YES	119	159	0.02	0.01	0.0119	0.0119	GPR107->G_protein-coupled_receptor_107,chr9:132815705-132902448:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	HS343T_FIBROBLAST	0.01	0.02	0.0238	FALSE	0	0	0	1	0	FALSE	ACH-000184
HS343T_FIBROBLAST	KCNQ5-IT1--KCNQ5	1	1	KCNQ5-IT1	3358	chr6:73386938:+	KCNQ5	10375	chr6:73713631:+	ONLY_REF_SPLICE	YES	0	56	1	0.03	0.0119	0.0119	NEIGHBORS_OVERLAP:+:+:[48059],KCNQ5-IT1->KCNQ5_intronic_transcript_1,chr6:73340223-73388282:+,KCNQ5->Oncogene{Bushman},chr6:73331520-73908574:+,potassium_voltage-gated_channel_subfamily_Q_member_5	HS343T_FIBROBLAST	0.03	1	0.0238	FALSE	1	11	0	34	0	FALSE	ACH-000184
HS343T_FIBROBLAST	PRKD1--CTD-2251F13.1	1	1	PRKD1	1600	chr14:30660505:-	CTD-2251F13.1	38031	chr14:30449473:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0119	0.0119	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,CTD-2251F13.1->chr14:30421603-30766249:-	HS343T_FIBROBLAST	1	1	0.0238	TRUE	0	1	0	5	1	TRUE	ACH-000184
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	262	135	BCR	20761	chr22:23631808:+	ABL1	43957	chr9:133729451:+	ONLY_REF_SPLICE	YES	0	4	1	0.99	2.3758	1.2242	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.99	1	3.6	TRUE	0	2	1	16	2	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	254	0	NCL	6884	chr2:232325380:-	PTMA	22009	chr2:232576646:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.3033	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.3033	TRUE	1	0	0	7	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	140	0	NCL	6884	chr2:232325380:-	PTMA	22018	chr2:232576655:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2695	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.2695	TRUE	1	0	0	7	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	122	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1063	0.2086	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	1.3149	TRUE	508	994	45	981	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	127	2	NCL	6884	chr2:232325380:-	PTMA	21452	chr2:232576089:+	INCL_NON_REF_SPLICE	YES	571	2865	0.18	0.04	1.1516	0.0181	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.18	1.1697	TRUE	1	0	0	7	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AFF1--TMSB4X	117	28	AFF1	3385	chr4:87869723:+	TMSB4X	36304	chrX:12994365:+	ONLY_REF_SPLICE	YES	5	70	0.97	0.67	1.061	0.2539	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,TMSB4X->chrX:12993227-12995346:+,thymosin_beta_4,_X-linked	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	0.97	1.3149	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	108	2	NCL	6884	chr2:232325380:-	PTMA	21433	chr2:232576070:+	INCL_NON_REF_SPLICE	YES	571	3205	0.16	0.03	0.9794	0.0181	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.16	0.9975	TRUE	1	0	0	7	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SLC38A2--PTMA	82	1	SLC38A2	2690	chr12:46764961:-	PTMA	17676	chr2:232573258:+	INCL_NON_REF_SPLICE	YES	333	6	0.2	0.93	0.7436	0.0091	GTEx&tcga_normals:1/3694=0.03%,SLC38A2->Oncogene{Bushman},chr12:46751972-46766650:-,solute_carrier_family_38_member_2,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.2	0.93	0.7527	TRUE	0	0	0	10	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	65	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	98	2	0.41	0.97	0.5894	0.0181	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.97	0.6075	TRUE	519	3926	326	965	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	62	2	NCL	6884	chr2:232325380:-	PTMA	21436	chr2:232576073:+	INCL_NON_REF_SPLICE	YES	571	3141	0.1	0.02	0.5622	0.0181	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.1	0.5803	TRUE	1	0	0	7	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	56	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5078	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.5078	FALSE	369	2501	205	193	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	35	10	MTAP	1239	chr9:21802780:+	CDKN2B-AS1	24548	chr9:22029432:+	ONLY_REF_SPLICE	YES	2	0	0.96	1	0.3174	0.0907	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.4081	FALSE	0	1	0	1	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	36	0	NCL	6884	chr2:232325380:-	PTMA	22003	chr2:232576640:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3265	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3265	TRUE	1	0	0	7	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	2	127	BCR	20761	chr22:23631808:+	ABL1	43960	chr9:133729454:+	ONLY_REF_SPLICE	YES	0	4	1	0.97	0.0181	1.1516	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.97	1	1.1697	TRUE	0	2	1	16	2	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	21	21	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1904	0.1904	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3808	FALSE	369	2501	205	193	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EEF2--RPS28	23	0	EEF2	8819	chr19:3977493:-	RPS28	13600	chr19:8386383:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2086	0	EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2086	TRUE	0	0	0	100	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	14	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	32	16	0.44	0.61	0.127	0.0997	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	0.61	0.2267	TRUE	267	562	48	632	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CASC9--RP11-300E4.2	13	5	CASC9	2662	chr8:76190592:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	40	0	0.31	1	0.1179	0.0453	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.31	1	0.1632	TRUE	0	23	0	19	23	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	13	4	AC104820.2	16783	chr2:182227645:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	YES	12	296	0.59	0.05	0.1179	0.0363	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.59	0.1542	FALSE	0	0	0	19	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	14	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.127	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.127	FALSE	499	1288	110	792	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	5	19	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0.1723	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.2176	FALSE	369	2501	205	193	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	9	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0816	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0816	FALSE	515	4851	409	746	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	7	6	AC104820.2	16783	chr2:182227645:+	ITGA4	22293	chr2:182322257:+	INCL_NON_REF_SPLICE	YES	12	346	0.52	0.04	0.0635	0.0544	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.52	0.1179	FALSE	0	0	0	16	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MTAP--CDKN2B-AS1	7	6	MTAP	1239	chr9:21802780:+	CDKN2B-AS1	27457	chr9:22046750:+	ONLY_REF_SPLICE	YES	2	19	0.87	0.41	0.0635	0.0544	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.41	0.87	0.1179	FALSE	0	3	0	1	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	7	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	29	18	0.28	0.38	0.0635	0.0363	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.28	0.38	0.0998	TRUE	267	562	48	632	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-80H8.4--SLC9A9-AS2	7	3	RP11-80H8.4	1215	chr3:142842418:+	SLC9A9-AS2	6442	chr3:143100786:+	ONLY_REF_SPLICE	YES	4	0	0.71	1	0.0635	0.0272	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-80H8.4->chr3:142842204-142850735:+,SLC9A9-AS2->SLC9A9_antisense_RNA_2,chr3:143100180-143101003:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.71	1	0.0907	TRUE	3	14	0	3	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	7	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0635	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0635	TRUE	0	0	0	81	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	7	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0635	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0635	FALSE	499	1288	110	792	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	7	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0635	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0635	FALSE	369	2501	205	193	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PCAT1--RP11-382A18.2	6	4	PCAT1	3907	chr8:128018863:+	RP11-382A18.2	10906	chr8:128351525:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0.0363	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Skin=[count:2=pct:0.6]},PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding),RP11-382A18.2->chr8:128351519-128404876:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0907	TRUE	4	84	1	46	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	5	7	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0.0635	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1088	FALSE	369	2501	205	193	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-108K3.1--GLDN	6	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	1	0	0.88	1	0.0544	0.0091	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.88	1	0.0635	FALSE	0	30	1	55	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	6	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0544	FALSE	369	2501	205	193	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-80H8.4--SLC9A9-AS2	6	0	RP11-80H8.4	1027	chr3:142842230:+	SLC9A9-AS2	6442	chr3:143100786:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0544	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-80H8.4->chr3:142842204-142850735:+,SLC9A9-AS2->SLC9A9_antisense_RNA_2,chr3:143100180-143101003:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0544	TRUE	3	14	0	3	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-80H8.4--SLC9A9-AS2	5	3	RP11-80H8.4	1215	chr3:142842418:+	SLC9A9-AS2	6445	chr3:143100789:+	INCL_NON_REF_SPLICE	YES	4	0	0.67	1	0.0453	0.0272	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-80H8.4->chr3:142842204-142850735:+,SLC9A9-AS2->SLC9A9_antisense_RNA_2,chr3:143100180-143101003:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0725	TRUE	3	14	0	3	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-ND6--MT-TE	5	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0453	0.0181	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.78	1	0.0634	FALSE	499	1288	110	792	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	5	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0453	TRUE	0	0	0	81	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	5	0	NCL	6884	chr2:232325380:-	PTMA	22021	chr2:232576658:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0453	TRUE	1	0	0	7	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-108K3.1--GLDN	4	4	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0.0363	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0726	FALSE	0	19	0	46	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	4	2	SPON2	4412	chr4:1195057:-	CTBP1	21854	chr4:1235307:-	ONLY_REF_SPLICE	YES	40	47	0.13	0.11	0.0363	0.0181	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	0.13	0.0544	TRUE	4	3	0	21	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	4	1	NCL	6884	chr2:232325380:-	PTMA	21982	chr2:232576619:+	INCL_NON_REF_SPLICE	NO	571	3143	0.01	0	0.0363	0.0091	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0454	FALSE	1	0	0	7	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0363	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	FALSE	369	2501	205	193	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	4	0	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0363	0	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0363	TRUE	477	1352	189	275	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	3	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0.0181	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0453	FALSE	416	2512	207	587	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	1	EIF1	1121	chr17:39845257:+	RPS28	8168	chr19:8386425:+	INCL_NON_REF_SPLICE	YES	775	0	0.01	1	0.0272	0.0091	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0363	FALSE	0	0	0	81	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGF1R--SYNM	3	1	IGF1R	3251	chr15:99251336:+	SYNM	42397	chr15:99638610:+	INCL_NON_REF_SPLICE	YES	6	1	0.4	0.8	0.0272	0.0091	IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor,SYNM->chr15:99638420-99675798:+,synemin	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	0.8	0.0363	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	3	1	NCL	6871	chr2:232325393:-	PTMA	21984	chr2:232576621:+	INCL_NON_REF_SPLICE	NO	492	3136	0.01	0	0.0272	0.0091	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.01	0.0363	FALSE	1	0	0	7	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CASC9--RP11-300E4.2	3	0	CASC9	1521	chr8:76236456:-	RP11-300E4.2	8723	chr8:75941694:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	CASC9->cancer_susceptibility_candidate_9_(non-protein_coding),chr8:76135639-76236976:-,RP11-300E4.2->chr8:75938663-75941695:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	12	0	10	12	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CTD-2012K14.6--SLC7A5	3	0	CTD-2012K14.6	1664	chr16:67597198:-	SLC7A5	9965	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	CTD-2012K14.6->chr16:67583117-67597861:-,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	EIF1--RPS28	3	0	EIF1	1089	chr17:39845225:+	RPS28	8128	chr19:8386385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	0	0	81	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0272	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	FALSE	369	2501	205	193	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RICTOR--SSBP2	3	0	RICTOR	1298	chr5:39074213:-	SSBP2	49835	chr5:80911376:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0272	0	RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-,SSBP2->chr5:80708840-81047616:-,single_stranded_DNA_binding_protein_2	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-661P17.1--SLCO3A1	2	2	RP11-661P17.1	3525	chr15:92016546:+	SLCO3A1	15689	chr15:92459223:+	ONLY_REF_SPLICE	YES	4	384	0.5	0.01	0.0181	0.0181	GTEx_FI:{Pancreas=[count:3=pct:1.7]},RP11-661P17.1->chr15:91951938-92148441:+,SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.5	0.0362	FALSE	1	11	1	4	10	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VAPB--APCDD1L-AS1	2	2	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	29152	chr20:57122868:+	ONLY_REF_SPLICE	YES	45	0	0.08	1	0.0181	0.0181	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.08	1	0.0362	FALSE	1	3	0	4	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRG--FHIT	2	1	PTPRG	2909	chr3:61734656:+	FHIT	62929	chr3:59908140:-	ONLY_REF_SPLICE	YES	32	76	0.09	0.04	0.0181	0.0091	YOSHIHARA_TCGA_num_samples[BRCA:1|PRAD:1],PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.09	0.0272	TRUE	0	1	0	1	1	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRG--FHIT	2	1	PTPRG	10407	chr3:61989171:+	FHIT	62929	chr3:59908140:-	ONLY_REF_SPLICE	YES	72	76	0.04	0.04	0.0181	0.0091	YOSHIHARA_TCGA_num_samples[BRCA:1|PRAD:1],PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.04	0.0272	TRUE	0	0	0	1	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-681L8.1--STPG2	2	1	RP11-681L8.1	3504	chr4:98313793:-	STPG2	24709	chr4:98162249:-	ONLY_REF_SPLICE	YES	0	1	1	0.75	0.0181	0.0091	RP11-681L8.1->chr4:98255786-98554974:-,STPG2->chr4:98105244-99064391:-,sperm_tail_PG-rich_repeat_containing_2	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.75	1	0.0272	TRUE	0	4	1	7	4	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	2	0	0.6	1	0.0181	0.0091	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.6	1	0.0272	FALSE	407	2205	196	549	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	32	0	0.09	1	0.0181	0.0091	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	1	0.0272	FALSE	272	151	14	158	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ADD1--NOP14	2	0	ADD1	1168	chr4:2845751:+	NOP14	36289	chr4:2956290:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1},LOCAL_INVERSION:+:-:[7857],ADD1->adducin_1,chr4:2845584-2931803:+,NOP14->NOP14_nucleolar_protein,chr4:2939660-2965112:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CHCHD3--EXOC4	2	0	CHCHD3	7933	chr7:132659929:-	EXOC4	32133	chr7:133160082:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	4	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	39215	chr10:5842668:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	6	0	16	3	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FAM208B--GDI2	2	0	FAM208B	1338	chr10:5727138:+	GDI2	38132	chr10:5853919:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_v2:{count=4;pct=0.05%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Testis=1},LOCAL_INVERSION:+:-:[1483],FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,GDI2->GDP_dissociation_inhibitor_2,chr10:5807186-5884095:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	GSE1--SLC7A5	2	0	GSE1	2365	chr16:85647004:+	SLC7A5	30231	chr16:87874761:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+,SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	3	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HNRNPK--MGAT1	2	0	HNRNPK	1152	chr9:86595418:-	MGAT1	18974	chr5:180236076:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	HNRNPK->Oncogene{Bushman},chr9:86582998-86595569:-,heterogeneous_nuclear_ribonucleoprotein_K,MGAT1->chr5:180217541-180242652:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,2-N-acetylglucosaminyltransferase	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGF1R--SYNM	2	0	IGF1R	3251	chr15:99251336:+	SYNM	46727	chr15:99666927:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	IGF1R->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr15:99192200-99507759:+,insulin_like_growth_factor_1_receptor,SYNM->chr15:99638420-99675798:+,synemin	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	MAD1L1--CTBP1	2	0	MAD1L1	35008	chr7:1937836:-	CTBP1	45730	chr4:1235307:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PIK3CD--ITCH	2	0	PIK3CD	1071	chr1:9711860:+	ITCH	40685	chr20:33065577:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	PIK3CD->Oncogene{Bushman},chr1:9711790-9789172:+,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_delta,ITCH->chr20:32951041-33099198:+,itchy_E3_ubiquitin_protein_ligase	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	REV1--MGAT4A	2	0	REV1	1219	chr2:100106279:-	MGAT4A	34738	chr2:99343030:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	REV1->REV1,_DNA_directed_polymerase,chr2:100016938-100106497:-,MGAT4A->chr2:99235569-99347589:-,mannosyl_(alpha-1,3-)-glycoprotein_beta-1,4-N-acetylglucosaminyltransferase,_isozyme_A	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RICTOR--SLAIN2	2	0	RICTOR	1298	chr5:39074213:-	SLAIN2	53074	chr4:48422142:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	RICTOR->ArcherDX_panel,FoundationOne_panel,RPTOR_independent_companion_of_MTOR_complex_2,chr5:38938021-39074510:-,SLAIN2->SLAIN_motif_family_member_2,chr4:48343339-48428229:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RNF4--CTBP1	2	0	RNF4	2916	chr4:2470985:+	CTBP1	27869	chr4:1232125:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	RNF4->chr4:2463947-2627047:+,ring_finger_protein_4,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	0	0	1	0	TRUE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444A22.1--AC007131.2	2	0	RP11-444A22.1	2236	chr2:60054281:-	AC007131.2	12182	chr2:59827663:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0181	0	GTEx_FI:{Testis=[count:11=pct:10.5]},RP11-444A22.1->chr2:59445815-60327335:-,AC007131.2->chr2:59465851-59960531:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0181	TRUE	0	2	0	1	1	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AC104820.2--ITGA4	1	2	AC104820.2	8902	chr2:182127704:+	ITGA4	25155	chr2:182339687:+	ONLY_REF_SPLICE	NO	51	296	0.06	0.01	0.0091	0.0181	NEIGHBORS[57643],AC104820.2->chr2:181966659-182264286:+,ITGA4->chr2:182321929-182400914:+,integrin_subunit_alpha_4	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.06	0.0272	FALSE	0	0	0	11	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	1	2	FBRSL1	21751	chr12:133158852:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	39	25	0.07	0.11	0.0091	0.0181	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.07	0.11	0.0272	TRUE	0	2	0	1	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	FBRSL1--NOC4L	1	2	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	NO	104	25	0.03	0.11	0.0091	0.0181	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.11	0.0272	TRUE	3	48	0	26	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-123O10.4--GRIP1	1	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0091	0.0181	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0272	FALSE	93	270	15	244	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VAPB--APCDD1L-AS1	1	2	VAPB	3372	chr20:56993419:+	APCDD1L-AS1	31664	chr20:57193796:+	ONLY_REF_SPLICE	YES	45	0	0.06	1	0.0091	0.0181	NEIGHBORS[64278],VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,APCDD1L-AS1->APCDD1L_antisense_RNA_1_(head_to_head),chr20:57090435-57194944:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	1	0.0272	FALSE	2	12	0	8	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	WWOX--RP11-319G9.5	1	2	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	NO	18	0	0.14	1	0.0091	0.0181	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.14	1	0.0272	FALSE	33	33	2	19	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	AP001432.14--TTC3	1	1	AP001432.14	1179	chr21:38593898:+	TTC3	24056	chr21:38480692:+	ONLY_REF_SPLICE	YES	8	132	0.2	0.01	0.0091	0.0091	LOCAL_REARRANGEMENT:+:[18307],AP001432.14->chr21:38593720-38610045:+,TTC3->chr21:38445526-38575413:+,tetratricopeptide_repeat_domain_3	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.2	0.0182	FALSE	0	0	0	15	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCR--ABL1	1	1	BCR	20761	chr22:23631808:+	ABL1	45990	chr9:133738150:+	ONLY_REF_SPLICE	YES	0	167	1	0.01	0.0091	0.0091	Cosmic{samples=5990,mutations=5142,papers=196},GTEx&tcga_normals:3/3694=0.08%,GTEx:0.05%,GTEx_FI:{Brain=[count:2=pct:0.3],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Thyroid=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Adipose_Tissue=[count:1=pct:0.3]},GTEx_v2:{count=3;pct=0.03%;dist=Brain_-_Hypothalamus=1,Liver=1,Thyroid=1},Mitelman{MDS_NOS=2,ALL=5,Nonneo_hemat=2,AUL=2,DLBL=2,AML=14,Heart=7,AL_bi=2,Skin=2,MM=2,CML_ab_t=291,BL=2,RA=2},chimerdb_omim:{AcuteLymphocyticLeukemia},chimerdb_omim:{ChronicMyelogenousLeukemia},chimerdb_pubmed{chronic granulocytic leukaemiam, chronic myeloid leukaemias, acute myeloid leukaemia,chronic myelogenous leukemia (CML), acute lymphoblastic leukemia (ALL),Blineage acute lymphoblastic leukemia(Blineage ALL),acute lymphoblastic leukemia(ALL),Chronic myeloid leukemia,acute leukemia,acute lymphoblastic leukemia.,leukemogenesis,Chronic myelogenous leukemia(CML),Philadelphia chromosome (Ph) positive Chronic myeloid leukaemia (CML),Philadelphia positive leukaemia,Chronic myeloid leukemia (CML) ,acute lymphoblastic leukemia(ALL), chronic myeloid leukemia (CML), biphenotypic leukemia,Philadelphiapositive chronic myelogenous leukemia ,Philadelphia chromosomepositive leukemias,Chronic myelogenous leukaemia (CML),thrombocythemia,acute lymphoblastic leukemia (ALL), Chronic myelogeneous leukaemia (CML),chronic myeloid leukemia (CML), acute lymphoblastic leukemia(APL),chronic myeloid leukaemia (CML), ALL and AML,chronic myelogenous leukaemia(CML), Ewing's sarcoma,leukemia,chronic myeloid leukaemia (CML),severalleukaemia,chronic myeloid leukemias (CML),Chronic myelogenous leukemia (CML) acute lymphoblastic leukemias (ALL),CML, ALL,chronic myelogenous leukemia (CML),chronic myelocytic leukaemia, acute lymphoblastic leukaemia,leukemic cells ,K562,Chronic myeloid leukemia(CML),chronic lymphocytic leukemia,Chronic Myeloid Leukaemia (CML),Chronic myelogenous leukemia,chronic myelogenous leukemia(CML), mediastinal tumor,chronic myelogenous leukemia(CML),childhood ALL,chronic myelomonocytic leukemia,Philadelphianegative chronic myeloid leukaemia,acute lymphoblastic leukemia (ALL),erythroleukemia, chronic myeloid leukemia (CML),acute undifferentiated leukemia (AUL),Tcell acute lymphoblastic leukemia, acute myelomonocytic leukemia,chronic myeloid leukemia (CML),chronic myelogenous leukaemia (CML),chronic neutrophilic leukemia and multiple myeloma (IgG kappa),Tcell acute lymphoblastic leukemia (TALL),B cell precursor leukemia cells,chronic myeloid leukemia,two Ph chromosome positive chronic myelogenous leukemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL),chronic myeloid leukemia ,acute nonlymphocytic leukaemia (ANLL),chronic myelogenous leukemia (CML),myelodysplastic syndromes (MDS),acute myelogenous leukemia(AML),chronic myeloid leukemia, acute lymphoblastic leukemia,acute B lymphocytic leukemia,PreB acute lymphoblastic leukemia(ALL), positive chronic myelogenous leukemia (CML),chronic myeloid leukaemia,chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), acute myeloid leukemia(AML), myeloproliferative disorder (MPD),myelodysplastic syndromes (MDS),chronic myeloid leukemia(CML), acute lymphoblastic leukemia (ALL),acute myelogenous leukemia (AML),Philadelphia chromosomenegative (Ph()) nonHodgkin's lymphomas (NHLs), Phpositive (Ph(+)) chronic myelogenous leukemia (CML),Acute lymphoblastic leukemia (ALL),Chronic myelogenous leukemia (CML),CML,adult acute lymphoblastic leukemia(ALL),acute lymphoblastic leukemia,chronic myelogenous leukemia(CML), acute lymphoblastic leukemia(ALL),Chronic myeloid leukaemia (CML),chronic myeloid leukemia(CML),childhood acute lymphoblastic leukemia,Chronic Myeloid Leukemia (CML),chronic myelogenous leukemia (CML), acute myeloid leukemia (AML),chronic myeloid leukaemia(CML),chronic myeloid leukemia (CML), Ph+ ALL,Chronic myeloid leukemia (CML),Philadelphia (Ph)positive acute lymphoblastic leukemia (ALL),Acute leukaemia,Chronic myelogenous leukemia (CML) ,chronic myeloid leukemia (CML), acute myeloid leukemia (AML),chronic myelogenous leukemia,Chronic myelogeneous leukaemia (CML),chronic granulocytic leukemia,acute myeloid leukemia(AML),chronic myelocytic leukemia (CML),Leukemia},{Klijn_CCL:Lymphoid=4},BCR->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breakpoint_cluster_region,chr22:23521891-23660224:+,ABL1->ABL_proto-oncogene_1,_non-receptor_tyrosine_kinase,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:133589333-133763062:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	1	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NCL--PTMA	1	1	NCL	3217	chr2:232329047:-	PTMA	21421	chr2:232576058:+	ONLY_REF_SPLICE	YES	967	3608	0	0	0.0091	0.0091	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Lymphoid=1,Colo-Rectal=1},NCL->chr2:232318242-232348352:-,nucleolin,PTMA->Oncogene{Bushman},chr2:232571605-232578251:+,prothymosin,_alpha	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0182	FALSE	0	0	0	1	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	OAZ1--PPP1R12C	1	1	OAZ1	1259	chr19:2269743:+	PPP1R12C	17683	chr19:55607703:-	ONLY_REF_SPLICE	NO	1641	87	0	0.02	0.0091	0.0091	GTEx&tcga_normals:2/3694=0.05%,GTEx_FI:{Breast=[count:4=pct:3.6],Lung=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Colon=[count:3=pct:1.6],Adipose_Tissue=[count:2=pct:0.7],Esophagus=[count:2=pct:0.5],Skin=[count:2=pct:0.6],Blood=[count:1=pct:0.6],Spleen=[count:1=pct:0.9],Nerve=[count:1=pct:0.6],Thyroid=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Liver=[count:1=pct:0.8]},GTEx_v2:{count=34;pct=0.39%;dist=Lung=5,Skin_-_Sun_Exposed_(Lower_leg)=5,Artery_-_Tibial=4,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Esophagus_-_Muscularis=2,Colon_-_Sigmoid=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Breast_-_Mammary_Tissue=1,Minor_Salivary_Gland=1,Liver=1,Thyroid=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Cells_-_Transformed_fibroblasts=1},OAZ1->chr19:2269485-2273487:+,ornithine_decarboxylase_antizyme_1,PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0.02	0.0182	FALSE	23	0	0	3	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PTPRG--FHIT	1	1	PTPRG	11503	chr3:62063932:+	FHIT	62929	chr3:59908140:-	ONLY_REF_SPLICE	YES	70	76	0.03	0.03	0.0091	0.0091	YOSHIHARA_TCGA_num_samples[BRCA:1|PRAD:1],PTPRG->Oncogene{Bushman},chr3:61547243-62283288:+,protein_tyrosine_phosphatase,_receptor_type_G,FHIT->Oncogene{Bushman},chr3:59735036-61237133:-,fragile_histidine_triad	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.03	0.0182	TRUE	0	0	0	1	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PXMP2--ANKLE2	1	1	PXMP2	2662	chr12:133266962:+	ANKLE2	21143	chr12:133331719:-	ONLY_REF_SPLICE	YES	53	37	0.04	0.05	0.0091	0.0091	LOCAL_INVERSION:+:-:[4978],PXMP2->chr12:133264192-133297276:+,peroxisomal_membrane_protein_2,ANKLE2->ankyrin_repeat_and_LEM_domain_containing_2,chr12:133302254-133338474:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.05	0.0182	TRUE	0	1	0	4	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RASA3--ING1	1	1	RASA3	3456	chr13:114839195:-	ING1	35102	chr13:111371576:+	ONLY_REF_SPLICE	YES	90	94	0.02	0.02	0.0091	0.0091	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Whole_Blood=1},RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.02	0.0182	TRUE	0	0	0	1	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RCC1--ACAP1	1	1	RCC1	2916	chr1:28835413:+	ACAP1	22150	chr17:7246698:+	ONLY_REF_SPLICE	NO	79	245	0.02	0.01	0.0091	0.0091	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,ACAP1->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_1,Oncogene{Bushman},chr17:7239848-7254797:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0182	FALSE	0	0	0	3	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-108K3.1--GLDN	1	1	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10895	chr15:51675982:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0091	0.0091	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0182	FALSE	1	20	0	46	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444A22.1--AC007131.2	1	1	RP11-444A22.1	3433	chr2:59739144:-	AC007131.2	23307	chr2:59466036:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0091	0.0091	GTEx_FI:{Testis=[count:11=pct:10.5]},RP11-444A22.1->chr2:59445815-60327335:-,AC007131.2->chr2:59465851-59960531:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0182	TRUE	8	0	0	2	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	3	1	0.4	0.0091	0.0091	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.4	1	0.0182	FALSE	467	2173	244	435	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SPON2--CTBP1	1	1	SPON2	4412	chr4:1195057:-	CTBP1	23049	chr4:1232125:-	ONLY_REF_SPLICE	YES	40	249	0.05	0.01	0.0091	0.0091	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1],Liver=[count:1=pct:0.8],Lung=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Whole_Blood=2,Lung=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1},LOCAL_REARRANGEMENT:-:[2486],SPON2->chr4:1160720-1202750:-,spondin_2,CTBP1->C-terminal_binding_protein_1,chr4:1205236-1243741:-	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.05	0.0182	FALSE	2	0	0	8	0	FALSE	ACH-000920
CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	YES	32	2	0.06	0.5	0.0091	0.0091	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	CMLT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.5	0.0182	FALSE	28	14	1	23	0	FALSE	ACH-000920
SNU119_OVARY	MLLT6--GPSM2	867	98	MLLT6	1200	chr17:36861994:+	GPSM2	38367	chr1:109461235:+	ONLY_REF_SPLICE	YES	37	388	0.96	0.71	6.3922	0.7225	MLLT6->Oncogene{Bushman},chr17:36861795-36886056:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_6,GPSM2->G-protein_signaling_modulator_2,chr1:109417972-109477167:+	SNU119_OVARY	0.71	0.96	7.1147	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	STARD7--TTC27	392	173	STARD7	3273	chr2:96860696:-	TTC27	25149	chr2:32958895:+	ONLY_REF_SPLICE	YES	397	30	0.59	0.95	2.8902	1.2755	STARD7->StAR_related_lipid_transfer_domain_containing_7,chr2:96850597-96874563:-,TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27	SNU119_OVARY	0.59	0.95	4.1657	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	CTDSPL2--CASC4	317	108	CTDSPL2	3072	chr15:44751398:+	CASC4	45857	chr15:44705534:+	ONLY_REF_SPLICE	YES	75	163	0.85	0.72	2.3372	0.7963	LOCAL_REARRANGEMENT:+:[11476],CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+	SNU119_OVARY	0.72	0.85	3.1335	TRUE	0	1	0	2	1	TRUE	ACH-000635
SNU119_OVARY	NADK--SSU72	319	34	NADK	3169	chr1:1709728:-	SSU72	24826	chr1:1480382:-	ONLY_REF_SPLICE	YES	4	354	0.99	0.5	2.3519	0.2507	NADK->NAD_kinase,chr1:1682671-1711896:-,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	SNU119_OVARY	0.5	0.99	2.6026	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	ITGB3--MYL4	261	33	ITGB3	2181	chr17:45351870:+	MYL4	26634	chr17:45286755:+	ONLY_REF_SPLICE	YES	23	2	0.93	0.99	1.9243	0.2433	LOCAL_INVERSION:+,chr17:+:[30167],ITGB3->chr17:45331212-45421658:+,chr17:45331263-45421658:+,integrin_subunit_beta_3,MYL4->chr17:45277812-45301045:+,myosin_light_chain_4	SNU119_OVARY	0.93	0.99	2.1676	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	DPH7--PTP4A3	141	0	DPH7	1297	chr9:140473091:-	PTP4A3	14726	chr8:142431487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0396	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Blood_Vessel=[count:10=pct:2.7],Heart=[count:7=pct:2.8],Pituitary=[count:4=pct:7.7],Nerve=[count:2=pct:1.2],Esophagus=[count:2=pct:0.5],Colon=[count:2=pct:1.0],Lung=[count:2=pct:1.2],Pancreas=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Kidney=[count:1=pct:7.1],Skin=[count:1=pct:0.3],Prostate=[count:1=pct:1.6],Testis=[count:1=pct:1.0]},GTEx_v2:{count=46;pct=0.53%;dist=Artery_-_Tibial=9,Heart_-_Atrial_Appendage=9,Pituitary=6,Cells_-_EBV-transformed_lymphocytes=5,Artery_-_Aorta=3,Lung=2,Artery_-_Coronary=2,Small_Intestine_-_Terminal_Ileum=1,Brain_-_Hypothalamus=1,Uterus=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Esophagus_-_Muscularis=1,Colon_-_Sigmoid=1,Testis=1},DPH7->chr9:140449356-140473387:-,diphthamide_biosynthesis_7,PTP4A3->Oncogene{Bushman},chr8:142402093-142441620:+,protein_tyrosine_phosphatase_type_IVA,_member_3	SNU119_OVARY	1	1	1.0396	TRUE	29	213	5	17	0	FALSE	ACH-000635
SNU119_OVARY	TIMM23B--LINC00843	99	26	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.7299	0.1917	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU119_OVARY	0.99	1	0.9216	TRUE	508	994	45	981	0	FALSE	ACH-000635
SNU119_OVARY	PLXDC1--TAF13	81	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5972	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SNU119_OVARY	1	1	0.5972	TRUE	7	10	0	216	0	FALSE	ACH-000635
SNU119_OVARY	SUGP2--UPF1	65	28	SUGP2	13645	chr19:19112422:-	UPF1	25447	chr19:18956789:+	ONLY_REF_SPLICE	YES	93	2	0.5	0.98	0.4792	0.2064	SUGP2->SURP_and_G-patch_domain_containing_2,chr19:19101697-19144832:-,UPF1->UPF1,_RNA_helicase_and_ATPase,chr19:18942747-18979045:+	SNU119_OVARY	0.5	0.98	0.6856	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MT-TA--MT-TC	69	11	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5087	0.0811	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU119_OVARY	1	1	0.5898	FALSE	462	80	0	856	0	FALSE	ACH-000635
SNU119_OVARY	SUPT7L--MED31	62	21	SUPT7L	5104	chr2:27880212:-	MED31	16025	chr17:6547979:-	ONLY_REF_SPLICE	YES	35	57	0.7	0.59	0.4571	0.1548	SUPT7L->SPT7-like_STAGA_complex_gamma_subunit,chr2:27873679-27886676:-,MED31->chr17:6546635-6554954:-,mediator_complex_subunit_31	SNU119_OVARY	0.59	0.7	0.6119	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	TIMM23--RP11-464F9.1	65	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	188	4	0.27	0.94	0.4792	0.0221	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU119_OVARY	0.27	0.94	0.5013	TRUE	519	3926	326	965	0	FALSE	ACH-000635
SNU119_OVARY	RP11-123O10.4--GRIP1	62	12	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4571	0.0885	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU119_OVARY	1	1	0.5456	FALSE	416	2512	207	587	0	FALSE	ACH-000635
SNU119_OVARY	TPD52--KLF12	59	8	TPD52	6214	chr8:81083660:-	KLF12	30674	chr13:74569190:-	ONLY_REF_SPLICE	YES	225	5	0.23	0.93	0.435	0.059	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,KLF12->Kruppel-like_factor_12,chr13:74260226-74708394:-	SNU119_OVARY	0.23	0.93	0.494	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	ZNF654--HMGB2	61	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4497	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU119_OVARY	1	1	0.4497	TRUE	0	0	0	518	0	FALSE	ACH-000635
SNU119_OVARY	DPY19L3--ZNF507	51	33	DPY19L3	4034	chr19:32902278:+	ZNF507	43075	chr19:32873373:+	ONLY_REF_SPLICE	YES	26	46	0.76	0.65	0.376	0.2433	LOCAL_REARRANGEMENT:+:[17876],DPY19L3->chr19:32896449-32976801:+,dpy-19_like_3_(C._elegans),ZNF507->chr19:32836500-32878573:+,zinc_finger_protein_507	SNU119_OVARY	0.65	0.76	0.6193	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	4	217	MT-ND4	2305	chrM:12064:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	5	0	0.98	1	0.0295	1.5999	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	0.98	1	1.6294	FALSE	268	700	35	284	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	4	206	MT-ND4	1213	chrM:10972:+	MT-ND4L	5376	chrM:10467:+	INCL_NON_REF_SPLICE	YES	21	0	0.91	1	0.0295	1.5188	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	0.91	1	1.5483	FALSE	344	826	44	306	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	3	208	MT-ND4	1318	chrM:11077:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	52	0	0.8	1	0.0221	1.5335	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	0.8	1	1.5556	FALSE	344	827	44	306	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	4	203	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	18	0	0.92	1	0.0295	1.4967	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	0.92	1	1.5262	FALSE	344	826	44	306	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	17	145	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	5514	0	0.03	1	0.1253	1.0691	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	0.03	1	1.1944	FALSE	344	827	44	306	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND6--MT-TE	50	2	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3686	0.0147	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU119_OVARY	1	1	0.3833	FALSE	499	1288	110	792	0	FALSE	ACH-000635
SNU119_OVARY	STARD7--TTC27	5	174	STARD7	4369	chr2:96858995:-	TTC27	25149	chr2:32958895:+	INCL_NON_REF_SPLICE	YES	381	30	0.32	0.86	0.0369	1.2829	STARD7->StAR_related_lipid_transfer_domain_containing_7,chr2:96850597-96874563:-,TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27	SNU119_OVARY	0.32	0.86	1.3198	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	8	147	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	9	0	0.95	1	0.059	1.0838	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	0.95	1	1.1428	FALSE	344	821	44	306	0	FALSE	ACH-000635
SNU119_OVARY	STARD7--TTC27	1	173	STARD7	4324	chr2:96859040:-	TTC27	25149	chr2:32958895:+	ONLY_REF_SPLICE	NO	384	30	0.31	0.85	0.0074	1.2755	STARD7->StAR_related_lipid_transfer_domain_containing_7,chr2:96850597-96874563:-,TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27	SNU119_OVARY	0.31	0.85	1.2829	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	7	144	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	14	0	0.92	1	0.0516	1.0617	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	0.92	1	1.1133	FALSE	344	826	44	306	0	FALSE	ACH-000635
SNU119_OVARY	RP11-680G10.1--GSE1	42	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	31	1	0.6	0.3097	0.0295	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU119_OVARY	0.6	1	0.3392	TRUE	465	1949	224	605	0	FALSE	ACH-000635
SNU119_OVARY	CTDSPL2--CASC4	12	112	CTDSPL2	3072	chr15:44751398:+	CASC4	41806	chr15:44695085:+	ONLY_REF_SPLICE	YES	75	202	0.62	0.38	0.0885	0.8258	LOCAL_REARRANGEMENT:+:[11476],CTDSPL2->CTD_small_phosphatase_like_2,chr15:44719432-44821236:+,CASC4->cancer_susceptibility_candidate_4,chr15:44580927-44707956:+	SNU119_OVARY	0.38	0.62	0.9143	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	5	137	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	46	0	0.76	1	0.0369	1.0101	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	0.76	1	1.047	FALSE	344	827	44	306	0	FALSE	ACH-000635
SNU119_OVARY	TTC28--PITPNB	34	19	TTC28	2523	chr22:29025540:-	PITPNB	50155	chr22:28256229:-	ONLY_REF_SPLICE	YES	5	41	0.91	0.56	0.2507	0.1401	{Klijn_CCL:Lung=1},NEIGHBORS[57882],TTC28->chr22:28374004-29075853:-,tetratricopeptide_repeat_domain_28,PITPNB->chr22:28247657-28316122:-,phosphatidylinositol_transfer_protein_beta	SNU119_OVARY	0.56	0.91	0.3908	FALSE	0	1	0	1	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND6--MT-TE	31	24	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.2286	0.1769	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU119_OVARY	0.98	1	0.4055	FALSE	499	1288	110	792	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND6--MT-TE	35	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.258	0.0295	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU119_OVARY	1	1	0.2875	FALSE	499	1288	110	792	0	FALSE	ACH-000635
SNU119_OVARY	TTC28-AS1--UNC79	33	9	TTC28-AS1	5841	chr22:28331218:+	UNC79	73157	chr14:94139697:+	ONLY_REF_SPLICE	YES	3	1	0.93	0.98	0.2433	0.0664	TTC28-AS1->TTC28_antisense_RNA_1,chr22:28315364-28404569:+,UNC79->chr14:93799565-94174222:+,unc-79_homolog_(C._elegans)	SNU119_OVARY	0.93	0.98	0.3097	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	LHFPL2--AP3B1	31	13	LHFPL2	12046	chr5:77860636:-	AP3B1	25271	chr5:77563419:-	ONLY_REF_SPLICE	YES	3	93	0.94	0.32	0.2286	0.0958	LHFPL2->chr5:77781038-78065844:-,lipoma_HMGIC_fusion_partner-like_2,AP3B1->adaptor_related_protein_complex_3_beta_1_subunit,chr5:77296349-77590579:-	SNU119_OVARY	0.32	0.94	0.3244	TRUE	0	1	0	1	1	TRUE	ACH-000635
SNU119_OVARY	RP11-96H19.1--RP11-446N19.1	33	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2433	0.0295	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU119_OVARY	1	1	0.2728	FALSE	515	4851	409	746	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	19	54	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	11555	0	0.01	1	0.1401	0.3981	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	0.01	1	0.5382	FALSE	328	800	43	304	0	FALSE	ACH-000635
SNU119_OVARY	AC009961.3--PLA2R1	29	13	AC009961.3	2693	chr2:160567228:-	PLA2R1	22549	chr2:160843869:-	ONLY_REF_SPLICE	YES	3	10	0.93	0.81	0.2138	0.0958	AC009961.3->chr2:160527219-160568946:-,PLA2R1->chr2:160788519-160919121:-,phospholipase_A2_receptor_1	SNU119_OVARY	0.81	0.93	0.3096	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	ADAM17--CYS1	28	1	ADAM17	14940	chr2:9642302:-	CYS1	27651	chr2:10206083:-	ONLY_REF_SPLICE	YES	146	0	0.17	1	0.2064	0.0074	ADAM17->ADAM_metallopeptidase_domain_17,chr2:9628615-9695921:-,CYS1->chr2:10196907-10221071:-,cystin_1	SNU119_OVARY	0.17	1	0.2138	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	NADK--SSU72	22	20	NADK	2712	chr1:1710185:-	SSU72	24826	chr1:1480382:-	ONLY_REF_SPLICE	YES	0	354	1	0.11	0.1622	0.1475	NADK->NAD_kinase,chr1:1682671-1711896:-,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	SNU119_OVARY	0.11	1	0.3097	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	NARS2--GAB2	21	9	NARS2	13099	chr11:78176922:-	GAB2	36033	chr11:77929802:-	INCL_NON_REF_SPLICE	YES	88	34	0.25	0.47	0.1548	0.0664	NEIGHBORS[17613],NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-,GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-	SNU119_OVARY	0.25	0.47	0.2212	FALSE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	AP000525.9--LA16c-60G3.6	22	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	18	0	0.56	1	0.1622	0.0074	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SNU119_OVARY	0.56	1	0.1696	TRUE	0	42	0	133	42	FALSE	ACH-000635
SNU119_OVARY	AL589743.1--RP11-536C10.17	21	1	AL589743.1	1109	chr14:19650126:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	17	0	0.56	1	0.1548	0.0074	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	SNU119_OVARY	0.56	1	0.1622	TRUE	0	33	0	45	33	FALSE	ACH-000635
SNU119_OVARY	RABGAP1L--CACYBP	19	9	RABGAP1L	30411	chr1:174721492:+	CACYBP	61346	chr1:174979059:+	ONLY_REF_SPLICE	YES	13	516	0.68	0.05	0.1401	0.0664	{Klijn_CCL:Lung=1},NEIGHBORS[3855],RABGAP1L->Oncogene{Bushman},RAB_GTPase_activating_protein_1-like,chr1:174128548-174964445:+,CACYBP->calcyclin_binding_protein,chr1:174968300-174980851:+	SNU119_OVARY	0.05	0.68	0.2065	FALSE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	MT-CO3--MT-ATP6	9	48	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	57	0.98	0.5	0.0664	0.3539	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU119_OVARY	0.5	0.98	0.4203	FALSE	189	492	56	216	0	FALSE	ACH-000635
SNU119_OVARY	MT-TA--MT-TC	18	12	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1327	0.0885	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU119_OVARY	1	1	0.2212	FALSE	462	80	0	856	0	FALSE	ACH-000635
SNU119_OVARY	TTC28-AS1--UNC79	18	12	TTC28-AS1	6993	chr22:28336159:+	UNC79	73157	chr14:94139697:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.1327	0.0885	TTC28-AS1->TTC28_antisense_RNA_1,chr22:28315364-28404569:+,UNC79->chr14:93799565-94174222:+,unc-79_homolog_(C._elegans)	SNU119_OVARY	0.97	1	0.2212	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MAL2--COLEC10	20	3	MAL2	5558	chr8:120233997:+	COLEC10	16396	chr8:120101919:+	ONLY_REF_SPLICE	YES	2791	1	0.01	0.96	0.1475	0.0221	LOCAL_REARRANGEMENT:+:[58452],MAL2->chr8:120177273-120257913:+,mal,_T-cell_differentiation_protein_2_(gene/pseudogene),COLEC10->chr8:120007691-120118821:+,collectin_subfamily_member_10	SNU119_OVARY	0.01	0.96	0.1696	TRUE	0	1	0	1	1	FALSE	ACH-000635
SNU119_OVARY	CRTC1--SUGP2	18	10	CRTC1	7647	chr19:18860685:+	SUGP2	40398	chr19:19105295:-	ONLY_REF_SPLICE	YES	26	114	0.52	0.2	0.1327	0.0737	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,SUGP2->SURP_and_G-patch_domain_containing_2,chr19:19101697-19144832:-	SNU119_OVARY	0.2	0.52	0.2064	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	13	30	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	20	0	0.68	1	0.0958	0.2212	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	0.68	1	0.317	FALSE	344	826	44	306	0	FALSE	ACH-000635
SNU119_OVARY	MT-CO3--MT-ATP6	4	63	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	9	0	0.88	1	0.0295	0.4645	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU119_OVARY	0.88	1	0.494	FALSE	189	492	56	216	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	12	31	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	7626	0	0.01	1	0.0885	0.2286	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	0.01	1	0.3171	FALSE	344	827	44	306	0	FALSE	ACH-000635
SNU119_OVARY	KIAA0753--SUPT7L	16	13	KIAA0753	9795	chr17:6524108:-	SUPT7L	29027	chr2:27884310:-	INCL_NON_REF_SPLICE	YES	18	61	0.62	0.32	0.118	0.0958	KIAA0753->KIAA0753,chr17:6481468-6544247:-,SUPT7L->SPT7-like_STAGA_complex_gamma_subunit,chr2:27873679-27886676:-	SNU119_OVARY	0.32	0.62	0.2138	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	TBL1XR1--RP11-706D8.3	18	4	TBL1XR1	10939	chr3:176782708:-	RP11-706D8.3	34353	chr3:177056312:-	ONLY_REF_SPLICE	YES	462	0	0.05	1	0.1327	0.0295	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-706D8.3->chr3:177055416-177066954:-	SNU119_OVARY	0.05	1	0.1622	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	5	53	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	558	0	0.09	1	0.0369	0.3908	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	0.09	1	0.4277	FALSE	344	827	44	306	0	FALSE	ACH-000635
SNU119_OVARY	HSP90AB1--MT-RNR2	17	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1736	0	0.01	1	0.1253	0.0074	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU119_OVARY	0.01	1	0.1327	FALSE	13	9	0	364	0	FALSE	ACH-000635
SNU119_OVARY	CRTC1--SUGP2	14	12	CRTC1	8721	chr19:18864383:+	SUGP2	39925	chr19:19105768:-	INCL_NON_REF_SPLICE	YES	29	95	0.47	0.21	0.1032	0.0885	GTEx_v2:{count=1;pct=0.01%;dist=Prostate=1},CRTC1->CREB_regulated_transcription_coactivator_1,Oncogene{Bushman},chr19:18794487-18893004:+,SUGP2->SURP_and_G-patch_domain_containing_2,chr19:19101697-19144832:-	SNU119_OVARY	0.21	0.47	0.1917	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MT-ND6--MT-TE	3	55	MT-ND6	1262	chrM:14412:-	MT-TE	4528	chrM:14740:-	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0221	0.4055	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU119_OVARY	0.97	1	0.4276	FALSE	499	1288	110	792	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND6--MT-TE	6	35	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0442	0.258	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU119_OVARY	0.98	1	0.3022	FALSE	499	1288	110	792	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND6--MT-TE	6	35	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0442	0.258	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU119_OVARY	0.98	1	0.3022	FALSE	499	1288	110	792	0	FALSE	ACH-000635
SNU119_OVARY	HELLS--TBC1D12	14	2	HELLS	4851	chr10:96317952:+	TBC1D12	39313	chr10:96256812:+	ONLY_REF_SPLICE	YES	27	15	0.37	0.52	0.1032	0.0147	LOCAL_REARRANGEMENT:+:[9860],HELLS->chr10:96305547-96373662:+,helicase,_lymphoid-specific,TBC1D12->TBC1_domain_family_member_12,chr10:96162261-96295687:+	SNU119_OVARY	0.37	0.52	0.1179	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	NADK--SSU72	13	6	NADK	2712	chr1:1710185:-	SSU72	25841	chr1:1479367:-	ONLY_REF_SPLICE	YES	0	449	1	0.04	0.0958	0.0442	NADK->NAD_kinase,chr1:1682671-1711896:-,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	SNU119_OVARY	0.04	1	0.14	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	DDX23--ASB8	14	1	DDX23	1759	chr12:49245867:-	ASB8	20259	chr12:48551528:-	ONLY_REF_SPLICE	YES	4	0	0.79	1	0.1032	0.0074	DDX23->DEAD-box_helicase_23,chr12:49223547-49246625:-,ASB8->ankyrin_repeat_and_SOCS_box_containing_8,chr12:48541571-48574996:-	SNU119_OVARY	0.79	1	0.1106	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	NPM1P24--SET	14	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1032	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU119_OVARY	1	1	0.1032	TRUE	0	0	0	434	0	FALSE	ACH-000635
SNU119_OVARY	MT-CO3--MT-ATP6	5	35	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	1	1	0.98	0.98	0.0369	0.258	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU119_OVARY	0.98	0.98	0.2949	FALSE	189	492	56	216	0	FALSE	ACH-000635
SNU119_OVARY	MLLT6--GPSM2	3	42	MLLT6	1200	chr17:36861994:+	GPSM2	38450	chr1:109461318:+	INCL_NON_REF_SPLICE	YES	37	364	0.55	0.11	0.0221	0.3097	MLLT6->Oncogene{Bushman},chr17:36861795-36886056:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_6,GPSM2->G-protein_signaling_modulator_2,chr1:109417972-109477167:+	SNU119_OVARY	0.11	0.55	0.3318	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	PLXDC1--TAF13	13	2	PLXDC1	27520	chr17:37222840:-	TAF13	38540	chr1:109605627:-	INCL_NON_REF_SPLICE	YES	2	235	0.88	0.06	0.0958	0.0147	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SNU119_OVARY	0.06	0.88	0.1105	TRUE	7	10	0	216	0	FALSE	ACH-000635
SNU119_OVARY	RP11-96H19.1--RP11-446N19.1	12	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0885	0.0369	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU119_OVARY	1	1	0.1254	FALSE	467	2173	244	435	0	FALSE	ACH-000635
SNU119_OVARY	HSPBP1--GRK5	13	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0958	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	SNU119_OVARY	1	1	0.0958	TRUE	1	39	0	134	39	FALSE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	5	32	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12900	0	0	1	0.0369	0.2359	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	0	1	0.2728	FALSE	343	822	44	305	0	FALSE	ACH-000635
SNU119_OVARY	NADK--SSU72	7	22	NADK	3169	chr1:1709728:-	SSU72	24862	chr1:1480346:-	INCL_NON_REF_SPLICE	YES	4	334	0.88	0.08	0.0516	0.1622	NADK->NAD_kinase,chr1:1682671-1711896:-,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	SNU119_OVARY	0.08	0.88	0.2138	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	HSP90AB1--MT-RNR2	12	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1741	0	0.01	1	0.0885	0.0074	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	SNU119_OVARY	0.01	1	0.0959	FALSE	13	9	0	364	0	FALSE	ACH-000635
SNU119_OVARY	WDHD1--RP11-112J1.2	12	1	WDHD1	2507	chr14:55480203:-	RP11-112J1.2	36065	chr14:59415031:+	ONLY_REF_SPLICE	YES	126	0	0.09	1	0.0885	0.0074	WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-,RP11-112J1.2->chr14:59294952-59484046:+	SNU119_OVARY	0.09	1	0.0959	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	C19orf43--ENOX1	12	0	C19orf43	1463	chr19:12845127:-	ENOX1	13293	chr13:43935588:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0885	0	C19orf43->chr19:12841454-12845589:-,chromosome_19_open_reading_frame_43,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	SNU119_OVARY	1	1	0.0885	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	LIMK1--S100A1	12	0	LIMK1	11265	chr7:73522230:+	S100A1	26700	chr1:153604204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0885	0	LIMK1->LIM_domain_kinase_1,Oncogene{Bushman},chr7:73497263-73536855:+,S100A1->S100_calcium_binding_protein_A1,chr1:153600402-153604513:+	SNU119_OVARY	1	1	0.0885	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	SLC38A9--CHD6	11	4	SLC38A9	7186	chr5:54993674:-	CHD6	66593	chr20:40054793:-	ONLY_REF_SPLICE	YES	205	21	0.07	0.42	0.0811	0.0295	SLC38A9->chr5:54921673-55069022:-,solute_carrier_family_38_member_9,CHD6->chr20:40030741-40247133:-,chromodomain_helicase_DNA_binding_protein_6	SNU119_OVARY	0.07	0.42	0.1106	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MT-TA--MT-TC	8	15	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.059	0.1106	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU119_OVARY	1	1	0.1696	FALSE	462	80	0	856	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND6--MT-TE	3	34	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0221	0.2507	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU119_OVARY	0.97	1	0.2728	FALSE	499	1288	110	792	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND6--MT-TE	6	20	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0.1475	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU119_OVARY	1	1	0.1917	FALSE	499	1288	110	792	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	3	30	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	22	0	0.6	1	0.0221	0.2212	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	0.6	1	0.2433	FALSE	344	826	44	306	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND6--MT-TE	4	26	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0.1917	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU119_OVARY	1	1	0.2212	FALSE	499	1288	110	792	0	FALSE	ACH-000635
SNU119_OVARY	RP11-634B7.4--TRIM58	9	5	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	5	1	0.74	0.0664	0.0369	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	SNU119_OVARY	0.74	1	0.1033	TRUE	158	633	76	73	0	FALSE	ACH-000635
SNU119_OVARY	RP11-680G10.1--GSE1	9	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	27	1	0.34	0.0664	0.0369	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SNU119_OVARY	0.34	1	0.1033	TRUE	458	1351	185	561	0	FALSE	ACH-000635
SNU119_OVARY	CLTC--RPS6KB1	9	3	CLTC	1316	chr17:57697534:+	RPS6KB1	41184	chr17:57987923:+	ONLY_REF_SPLICE	YES	151	25	0.07	0.32	0.0664	0.0221	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	SNU119_OVARY	0.07	0.32	0.0885	TRUE	0	1	0	5	0	TRUE	ACH-000635
SNU119_OVARY	RAPH1--WDR12	9	1	RAPH1	1300	chr2:204399834:-	WDR12	32989	chr2:203790191:-	ONLY_REF_SPLICE	YES	10	0	0.5	1	0.0664	0.0074	RAPH1->Oncogene{Bushman},Ras_association_(RalGDS/AF-6)_and_pleckstrin_homology_domains_1,chr2:204259068-204400133:-,WDR12->WD_repeat_domain_12,chr2:203739505-203879521:-	SNU119_OVARY	0.5	1	0.0738	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MT-ND6--MT-TE	9	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0664	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU119_OVARY	1	1	0.0664	FALSE	499	1288	110	792	0	FALSE	ACH-000635
SNU119_OVARY	MT-CO3--MT-ATP6	8	3	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	7	0	0.61	1	0.059	0.0221	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU119_OVARY	0.61	1	0.0811	FALSE	189	492	56	216	0	FALSE	ACH-000635
SNU119_OVARY	NADK--SSU72	6	11	NADK	3169	chr1:1709728:-	SSU72	25841	chr1:1479367:-	ONLY_REF_SPLICE	YES	4	449	0.81	0.04	0.0442	0.0811	NADK->NAD_kinase,chr1:1682671-1711896:-,SSU72->SSU72_homolog,_RNA_polymerase_II_CTD_phosphatase,chr1:1477053-1510249:-	SNU119_OVARY	0.04	0.81	0.1253	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	RP11-353N4.6--SEC22B	7	6	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	259	820	0.05	0.02	0.0516	0.0442	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SNU119_OVARY	0.02	0.05	0.0958	TRUE	49	42	7	43	0	FALSE	ACH-000635
SNU119_OVARY	DDX23--RP11-474C8.4	8	0	DDX23	1759	chr12:49245867:-	RP11-474C8.4	19215	chr12:48563384:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.059	0	DDX23->DEAD-box_helicase_23,chr12:49223547-49246625:-,RP11-474C8.4->chr12:48562630-48563442:-	SNU119_OVARY	1	1	0.059	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	GPRIN1--SNCB	8	0	GPRIN1	1135	chr5:176037000:-	SNCB	12572	chr5:176048304:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.059	0	LOCAL_REARRANGEMENT:-:[9951],GPRIN1->G_protein_regulated_inducer_of_neurite_outgrowth_1,chr5:176022803-176037134:-,SNCB->chr5:176047085-176057530:-,synuclein_beta	SNU119_OVARY	1	1	0.059	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.059	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU119_OVARY	1	1	0.059	FALSE	462	80	0	856	0	FALSE	ACH-000635
SNU119_OVARY	PLXDC1--TAF13	8	0	PLXDC1	27476	chr17:37222884:-	TAF13	38494	chr1:109605673:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.059	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	SNU119_OVARY	1	1	0.059	TRUE	7	10	0	216	0	FALSE	ACH-000635
SNU119_OVARY	SUGP2--UPF1	1	28	SUGP2	14707	chr19:19109733:-	UPF1	25447	chr19:18956789:+	ONLY_REF_SPLICE	NO	102	2	0.22	0.94	0.0074	0.2064	SUGP2->SURP_and_G-patch_domain_containing_2,chr19:19101697-19144832:-,UPF1->UPF1,_RNA_helicase_and_ATPase,chr19:18942747-18979045:+	SNU119_OVARY	0.22	0.94	0.2138	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	4	14	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	19	0	0.49	1	0.0295	0.1032	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	0.49	1	0.1327	FALSE	344	826	44	306	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	4	14	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	40	0	0.31	1	0.0295	0.1032	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	0.31	1	0.1327	FALSE	344	827	44	306	0	FALSE	ACH-000635
SNU119_OVARY	MRPL33--SLC4A1AP	7	1	MRPL33	3246	chr2:27997397:+	SLC4A1AP	26807	chr2:27916552:+	ONLY_REF_SPLICE	YES	761	103	0.01	0.07	0.0516	0.0074	{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[76744],MRPL33->chr2:27994584-28210954:+,mitochondrial_ribosomal_protein_L33,SLC4A1AP->chr2:27886338-27917840:+,solute_carrier_family_4_member_1_adaptor_protein	SNU119_OVARY	0.01	0.07	0.059	FALSE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	RP11-353N4.6--SEC22B	5	9	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	259	987	0.05	0.01	0.0369	0.0664	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	SNU119_OVARY	0.01	0.05	0.1033	TRUE	33	36	9	21	0	FALSE	ACH-000635
SNU119_OVARY	ATP2B1--RP11-114H23.1	7	0	ATP2B1	3138	chr12:90049456:-	RP11-114H23.1	36154	chr12:76025094:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0516	0	ATP2B1->ATPase_plasma_membrane_Ca2+_transporting_1,chr12:89981828-90103077:-,RP11-114H23.1->chr12:75956982-76377795:-	SNU119_OVARY	1	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MLLT6--GPSM2	3	16	MLLT6	1200	chr17:36861994:+	GPSM2	39544	chr1:109465039:+	ONLY_REF_SPLICE	YES	37	477	0.34	0.04	0.0221	0.118	MLLT6->Oncogene{Bushman},chr17:36861795-36886056:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_6,GPSM2->G-protein_signaling_modulator_2,chr1:109417972-109477167:+	SNU119_OVARY	0.04	0.34	0.1401	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MT-CO3--MT-ATP6	7	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU119_OVARY	1	1	0.0516	FALSE	189	492	56	216	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND6--MT-TE	7	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU119_OVARY	1	1	0.0516	FALSE	499	1288	110	792	0	FALSE	ACH-000635
SNU119_OVARY	RP11-96H19.1--RP11-446N19.1	6	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0442	0.0295	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU119_OVARY	1	1	0.0737	FALSE	407	2205	196	549	0	FALSE	ACH-000635
SNU119_OVARY	SH3RF1--CBR4	6	4	SH3RF1	3286	chr4:170189971:-	CBR4	22868	chr4:169928907:-	ONLY_REF_SPLICE	YES	33	53	0.23	0.16	0.0442	0.0295	NEIGHBORS[83981],SH3RF1->SH3_domain_containing_ring_finger_1,chr4:170015407-170192256:-,CBR4->carbonyl_reductase_4,chr4:169784921-169931426:-	SNU119_OVARY	0.16	0.23	0.0737	FALSE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	FMN1--RP11-380D11.2	6	3	FMN1	16745	chr15:33300215:-	RP11-380D11.2	48658	chr15:41902398:-	ONLY_REF_SPLICE	YES	13	0	0.41	1	0.0442	0.0221	FMN1->chr15:33057747-33486897:-,formin_1,RP11-380D11.2->chr15:41901664-41904925:-	SNU119_OVARY	0.41	1	0.0663	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MT-CO3--MT-ATP6	4	11	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	7	0	0.68	1	0.0295	0.0811	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU119_OVARY	0.68	1	0.1106	FALSE	189	492	56	216	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	6	3	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0.0221	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	1	1	0.0663	FALSE	344	821	44	306	0	FALSE	ACH-000635
SNU119_OVARY	INTS4--TENM4	6	2	INTS4	11304	chr11:77666988:-	TENM4	79624	chr11:78387432:-	ONLY_REF_SPLICE	YES	67	0	0.11	1	0.0442	0.0147	INTS4->chr11:77589766-77705724:-,integrator_complex_subunit_4,TENM4->chr11:78363876-79151992:-,teneurin_transmembrane_protein_4	SNU119_OVARY	0.11	1	0.0589	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MT-TA--MT-TC	4	10	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0.0737	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU119_OVARY	1	1	0.1032	FALSE	462	80	0	856	0	FALSE	ACH-000635
SNU119_OVARY	AP000230.1--AP001596.6	6	1	AP000230.1	4332	chr21:27588148:+	AP001596.6	18001	chr21:27843070:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0.0074	GTEx_FI:{Brain=[count:3=pct:0.5]},AP000230.1->chr21:27543189-27589700:+,AP001596.6->chr21:27750871-27844017:+	SNU119_OVARY	1	1	0.0516	TRUE	2	11	0	3	0	FALSE	ACH-000635
SNU119_OVARY	RP11-120D5.1--MID1	6	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	5	0.88	0.58	0.0442	0.0074	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU119_OVARY	0.58	0.88	0.0516	FALSE	16	356	14	466	0	FALSE	ACH-000635
SNU119_OVARY	KIAA0753--SUPT7L	3	12	KIAA0753	9795	chr17:6524108:-	SUPT7L	29082	chr2:27884255:-	ONLY_REF_SPLICE	YES	18	54	0.45	0.22	0.0221	0.0885	KIAA0753->KIAA0753,chr17:6481468-6544247:-,SUPT7L->SPT7-like_STAGA_complex_gamma_subunit,chr2:27873679-27886676:-	SNU119_OVARY	0.22	0.45	0.1106	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MT-CO3--MT-ATP6	6	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU119_OVARY	1	1	0.0442	FALSE	189	492	56	216	0	FALSE	ACH-000635
SNU119_OVARY	MT-ND4--MT-ND4L	6	0	MT-ND4	1042	chrM:10801:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0442	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU119_OVARY	1	1	0.0442	FALSE	344	821	44	306	0	FALSE	ACH-000635
SNU119_OVARY	ABCD3--RP11-148B18.3	5	2	ABCD3	12453	chr1:94946162:+	RP11-148B18.3	30348	chr1:94798865:+	INCL_NON_REF_SPLICE	YES	75	0	0.09	1	0.0369	0.0147	LOCAL_REARRANGEMENT:+:[83529],ABCD3->ATP_binding_cassette_subfamily_D_member_3,chr1:94883933-94984222:+,RP11-148B18.3->chr1:94798823-94800404:+	SNU119_OVARY	0.09	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	SAMD5--SASH1	5	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	7	7	0.46	0.46	0.0369	0.0074	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	SNU119_OVARY	0.46	0.46	0.0443	TRUE	53	396	64	110	0	FALSE	ACH-000635
SNU119_OVARY	FTH1--ACTG1	5	0	FTH1	1222	chr11:61734911:-	ACTG1	10551	chr17:79479825:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0369	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTG1->actin_gamma_1,chr17:79476997-79490873:-	SNU119_OVARY	1	1	0.0369	TRUE	0	0	0	64	0	FALSE	ACH-000635
SNU119_OVARY	GPD2--AC093375.1	3	8	GPD2	13972	chr2:157414094:+	AC093375.1	29345	chr2:156881119:-	INCL_NON_REF_SPLICE	YES	130	0	0.08	1	0.0221	0.059	GPD2->chr2:157291802-157470247:+,glycerol-3-phosphate_dehydrogenase_2,AC093375.1->chr2:156868129-156881125:-	SNU119_OVARY	0.08	1	0.0811	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	LINC01036--LINC01037	4	4	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0.0295	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SNU119_OVARY	1	1	0.059	FALSE	0	24	0	62	0	FALSE	ACH-000635
SNU119_OVARY	PTPRK--CTD-2349B8.1	4	3	PTPRK	5969	chr6:128718711:-	CTD-2349B8.1	55142	chr16:19131429:+	ONLY_REF_SPLICE	YES	48	0	0.13	1	0.0295	0.0221	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,CTD-2349B8.1->chr16:19125324-19184900:+	SNU119_OVARY	0.13	1	0.0516	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	GCSH--CDYL2	4	2	GCSH	3844	chr16:81121206:-	CDYL2	20849	chr16:80646733:-	ONLY_REF_SPLICE	YES	94	4	0.06	0.6	0.0295	0.0147	GCSH->chr16:81115566-81130008:-,glycine_cleavage_system_protein_H,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	SNU119_OVARY	0.06	0.6	0.0442	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	GPD2--AC093375.1	3	6	GPD2	13972	chr2:157414094:+	AC093375.1	29376	chr2:156881088:-	ONLY_REF_SPLICE	YES	130	0	0.06	1	0.0221	0.0442	GPD2->chr2:157291802-157470247:+,glycerol-3-phosphate_dehydrogenase_2,AC093375.1->chr2:156868129-156881125:-	SNU119_OVARY	0.06	1	0.0663	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	ITGB3--MYL4	4	2	ITGB3	1095	chr17:45331306:+	MYL4	26634	chr17:45286755:+	ONLY_REF_SPLICE	YES	0	2	1	0.75	0.0295	0.0147	LOCAL_INVERSION:+,chr17:+:[30167],ITGB3->chr17:45331212-45421658:+,chr17:45331263-45421658:+,integrin_subunit_beta_3,MYL4->chr17:45277812-45301045:+,myosin_light_chain_4	SNU119_OVARY	0.75	1	0.0442	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	AP000230.1--AP001596.6	4	1	AP000230.1	4332	chr21:27588148:+	AP001596.6	11833	chr21:27760043:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0.0074	GTEx_FI:{Brain=[count:3=pct:0.5]},AP000230.1->chr21:27543189-27589700:+,AP001596.6->chr21:27750871-27844017:+	SNU119_OVARY	1	1	0.0369	TRUE	0	11	0	2	4	FALSE	ACH-000635
SNU119_OVARY	CTD-2337A12.1--CAST	4	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	131	1	0.04	0.0295	0.0074	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	SNU119_OVARY	0.04	1	0.0369	TRUE	347	1186	183	220	0	FALSE	ACH-000635
SNU119_OVARY	PTPRK--CTD-2349B8.1	4	1	PTPRK	5969	chr6:128718711:-	CTD-2349B8.1	59135	chr16:19184752:+	ONLY_REF_SPLICE	YES	48	0	0.09	1	0.0295	0.0074	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,CTD-2349B8.1->chr16:19125324-19184900:+	SNU119_OVARY	0.09	1	0.0369	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	RBBP4--ZBTB8OS	4	1	RBBP4	1920	chr1:33117662:+	ZBTB8OS	21255	chr1:33100393:-	ONLY_REF_SPLICE	YES	706	173	0.01	0.03	0.0295	0.0074	LOCAL_INVERSION:+:-:[239],RBBP4->chr1:33116743-33151812:+,retinoblastoma_binding_protein_4,ZBTB8OS->chr1:33065773-33116504:-,zinc_finger_and_BTB_domain_containing_8_opposite_strand	SNU119_OVARY	0.01	0.03	0.0369	FALSE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	SH3RF1--CBR4	4	1	SH3RF1	3286	chr4:170189971:-	CBR4	31516	chr4:169815916:-	ONLY_REF_SPLICE	YES	33	1	0.13	0.83	0.0295	0.0074	NEIGHBORS[83981],SH3RF1->SH3_domain_containing_ring_finger_1,chr4:170015407-170192256:-,CBR4->carbonyl_reductase_4,chr4:169784921-169931426:-	SNU119_OVARY	0.13	0.83	0.0369	FALSE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	CBFB--CES2	4	0	CBFB	5896	chr16:67116211:+	CES2	20110	chr16:66976008:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	LOCAL_REARRANGEMENT:+:[84020],CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,CES2->carboxylesterase_2,chr16:66968347-66978999:+	SNU119_OVARY	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU119_OVARY	1	1	0.0295	FALSE	499	1288	110	792	0	FALSE	ACH-000635
SNU119_OVARY	NPM1P24--SET	4	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SNU119_OVARY	1	1	0.0295	TRUE	0	0	0	434	0	FALSE	ACH-000635
SNU119_OVARY	TMEM245--EPB41L4B	4	0	TMEM245	12862	chr9:111822634:-	EPB41L4B	31450	chr9:112042201:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0295	0	LOCAL_REARRANGEMENT:-:[52030],TMEM245->chr9:111777432-111882225:-,transmembrane_protein_245,EPB41L4B->chr9:111934255-112083244:-,erythrocyte_membrane_protein_band_4.1_like_4B	SNU119_OVARY	1	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	ZNF654--HMGB2	4	0	ZNF654	1688	chr3:88188941:+	HMGB2	12531	chr4:174253308:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0295	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SNU119_OVARY	1	1	0.0295	TRUE	0	0	0	518	0	FALSE	ACH-000635
SNU119_OVARY	RP11-123O10.4--GRIP1	3	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0221	0.0221	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SNU119_OVARY	0.86	1	0.0442	FALSE	93	270	15	244	0	FALSE	ACH-000635
SNU119_OVARY	AL589743.1--RP11-536C10.17	3	2	AL589743.1	9393	chr14:19680685:+	RP11-536C10.17	25774	chr14:19390866:+	INCL_NON_REF_SPLICE	YES	224	0	0.02	1	0.0221	0.0147	AL589743.1->chr14:19650018-19718563:+,RP11-536C10.17->chr14:19390865-19391038:+	SNU119_OVARY	0.02	1	0.0368	TRUE	0	8	0	6	8	TRUE	ACH-000635
SNU119_OVARY	GPD2--AC093375.1	3	2	GPD2	13972	chr2:157414094:+	AC093375.1	30487	chr2:156879329:-	ONLY_REF_SPLICE	YES	130	1	0.04	0.83	0.0221	0.0147	GPD2->chr2:157291802-157470247:+,glycerol-3-phosphate_dehydrogenase_2,AC093375.1->chr2:156868129-156881125:-	SNU119_OVARY	0.04	0.83	0.0368	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	ITGB3--MYL4	2	6	ITGB3	2181	chr17:45351870:+	MYL4	27803	chr17:45291165:+	ONLY_REF_SPLICE	YES	23	47	0.26	0.15	0.0147	0.0442	LOCAL_INVERSION:+,chr17:+:[30167],ITGB3->chr17:45331212-45421658:+,chr17:45331263-45421658:+,integrin_subunit_beta_3,MYL4->chr17:45277812-45301045:+,myosin_light_chain_4	SNU119_OVARY	0.15	0.26	0.0589	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	AP000525.9--LA16c-60G3.6	3	1	AP000525.9	6835	chr22:16162397:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	51	0	0.07	1	0.0221	0.0074	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SNU119_OVARY	0.07	1	0.0295	TRUE	0	8	0	10	8	TRUE	ACH-000635
SNU119_OVARY	ATP2B1--RP11-114H23.2	3	1	ATP2B1	3138	chr12:90049456:-	RP11-114H23.2	31319	chr12:76088755:-	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.0221	0.0074	ATP2B1->ATPase_plasma_membrane_Ca2+_transporting_1,chr12:89981828-90103077:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU119_OVARY	0.2	1	0.0295	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	MYL6--CSDE1	3	1	MYL6	2462	chr12:56553406:+	CSDE1	17351	chr1:115282346:-	ONLY_REF_SPLICE	YES	151	1563	0.03	0	0.0221	0.0074	MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	SNU119_OVARY	0	0.03	0.0295	FALSE	0	1	0	3	0	FALSE	ACH-000635
SNU119_OVARY	RP11-319G9.5--WWOX	3	1	RP11-319G9.5	2211	chr16:79030253:+	WWOX	34620	chr16:79245505:+	ONLY_REF_SPLICE	YES	0	12	1	0.25	0.0221	0.0074	NEIGHBORS_OVERLAP:+:+:[10385],RP11-319G9.5->chr16:79028242-79038627:+,WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+	SNU119_OVARY	0.25	1	0.0295	FALSE	154	425	28	76	0	FALSE	ACH-000635
SNU119_OVARY	RPSAP52--HMGA2	3	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	2	255	0.67	0.02	0.0221	0.0074	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	SNU119_OVARY	0.02	0.67	0.0295	FALSE	0	59	0	125	0	FALSE	ACH-000635
SNU119_OVARY	ADARB1--RPTN	3	0	ADARB1	1941	chr21:46494708:+	RPTN	34229	chr1:152130385:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	ADARB1->adenosine_deaminase,_RNA_specific_B1,chr21:46493768-46646478:+,RPTN->chr1:152126071-152131704:-,repetin	SNU119_OVARY	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	AGBL4--AGBL4-IT1	3	0	AGBL4	3399	chr1:50162985:-	AGBL4-IT1	30507	chr1:49840016:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	NEIGHBORS_OVERLAP:-:-:[97884],AGBL4->ATP/GTP_binding_protein-like_4,chr1:48998527-50489585:-,AGBL4-IT1->AGBL4_intronic_transcript_1,chr1:49839873-49937757:-	SNU119_OVARY	1	1	0.0221	FALSE	75	131	5	14	0	FALSE	ACH-000635
SNU119_OVARY	CALM3--MT-ATP8	3	0	CALM3	8074	chr19:47113576:+	MT-ATP8	11581	chrM:8398:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0221	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU119_OVARY	1	1	0.0221	FALSE	12	0	0	26	0	FALSE	ACH-000635
SNU119_OVARY	CALM3--MT-ATP8	3	0	CALM3	8081	chr19:47113583:+	MT-ATP8	11589	chrM:8406:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0221	0	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SNU119_OVARY	1	1	0.0221	FALSE	12	0	0	26	0	FALSE	ACH-000635
SNU119_OVARY	CTB-58E17.3--GPSM2	3	0	CTB-58E17.3	1208	chr17:36862307:-	GPSM2	17349	chr1:109461235:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	CTB-58E17.3->chr17:36859733-36862514:-,GPSM2->G-protein_signaling_modulator_2,chr1:109417972-109477167:+	SNU119_OVARY	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	ECI1--MT-ND2	3	0	ECI1	4260	chr16:2294407:-	MT-ND2	11757	chrM:5224:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0221	0	ECI1->chr16:2289396-2302301:-,enoyl-CoA_delta_isomerase_1,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU119_OVARY	1	1	0.0221	FALSE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	MFGE8--PTMS	3	0	MFGE8	12104	chr15:89442461:-	PTMS	19453	chr12:6879787:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0221	0	MFGE8->chr15:89441916-89456642:-,milk_fat_globule-EGF_factor_8_protein,PTMS->chr12:6874682-6880116:+,parathymosin	SNU119_OVARY	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	NOD1--SKAP2	3	0	NOD1	1179	chr7:30518222:-	SKAP2	25937	chr7:26933592:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	NOD1->Oncogene{Bushman},chr7:30464143-30518400:-,nucleotide_binding_oligomerization_domain_containing_1,SKAP2->chr7:26706681-27034858:-,src_kinase_associated_phosphoprotein_2	SNU119_OVARY	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	RP11-89K10.1--PCAT1	3	0	RP11-89K10.1	1057	chr8:127570176:+	PCAT1	14438	chr8:127889917:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	RP11-89K10.1->chr8:127570120-127725660:+,PCAT1->chr8:127859300-128033259:+,prostate_cancer_associated_transcript_1_(non-protein_coding)	SNU119_OVARY	1	1	0.0221	TRUE	0	1	0	1	1	TRUE	ACH-000635
SNU119_OVARY	RP13-188A5.1--KLF8	3	0	RP13-188A5.1	2795	chrX:56041394:+	KLF8	9003	chrX:56291613:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0221	0	GTEx_FI:{Nerve=[count:3=pct:1.8],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Ovary=[count:2=pct:3.8],Small_Intestine=[count:1=pct:1.8],Prostate=[count:1=pct:1.6],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Esophagus=[count:1=pct:0.2]},RP13-188A5.1->chrX:55934556-56041606:+,KLF8->Kruppel-like_factor_8,chrX:56258854-56314322:+	SNU119_OVARY	1	1	0.0221	TRUE	0	1	0	1	1	TRUE	ACH-000635
SNU119_OVARY	SMUG1--PAXIP1	3	0	SMUG1	9360	chr12:54559158:-	PAXIP1	16995	chr7:154790494:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	SMUG1->chr12:54558529-54582778:-,single-strand-selective_monofunctional_uracil-DNA_glycosylase_1,PAXIP1->PAX_interacting_protein_1,chr7:154735397-154794794:-	SNU119_OVARY	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	SREBF2--L3MBTL2	3	0	SREBF2	1254	chr22:42229362:+	L3MBTL2	38217	chr22:41615423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	GTEx_v2:{count=1;pct=0.01%;dist=Uterus=1},SREBF2->chr22:42229109-42303312:+,sterol_regulatory_element_binding_transcription_factor_2,L3MBTL2->L3MBTL2_polycomb_repressive_complex_1_subunit,chr22:41601209-41627275:+	SNU119_OVARY	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	WDHD1--RP11-112J1.2	3	0	WDHD1	1395	chr14:55493429:-	RP11-112J1.2	36065	chr14:59415031:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0221	0	WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-,RP11-112J1.2->chr14:59294952-59484046:+	SNU119_OVARY	1	1	0.0221	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	AC009961.3--PLA2R1	2	3	AC009961.3	2693	chr2:160567228:-	PLA2R1	23752	chr2:160840584:-	ONLY_REF_SPLICE	YES	3	8	0.62	0.38	0.0147	0.0221	AC009961.3->chr2:160527219-160568946:-,PLA2R1->chr2:160788519-160919121:-,phospholipase_A2_receptor_1	SNU119_OVARY	0.38	0.62	0.0368	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	LINC01036--LINC01037	2	3	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0.0221	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SNU119_OVARY	1	1	0.0368	FALSE	0	26	0	50	0	FALSE	ACH-000635
SNU119_OVARY	SH3RF1--CBR4	2	3	SH3RF1	3286	chr4:170189971:-	CBR4	23733	chr4:169928042:-	ONLY_REF_SPLICE	YES	33	48	0.13	0.09	0.0147	0.0221	NEIGHBORS[83981],SH3RF1->SH3_domain_containing_ring_finger_1,chr4:170015407-170192256:-,CBR4->carbonyl_reductase_4,chr4:169784921-169931426:-	SNU119_OVARY	0.09	0.13	0.0368	FALSE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	TPD52--KLF12	2	3	TPD52	6214	chr8:81083660:-	KLF12	31738	chr13:74518207:-	ONLY_REF_SPLICE	YES	225	8	0.02	0.38	0.0147	0.0221	TPD52->Oncogene{Bushman},chr8:80870571-81143467:-,tumor_protein_D52,KLF12->Kruppel-like_factor_12,chr13:74260226-74708394:-	SNU119_OVARY	0.02	0.38	0.0368	TRUE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	LAMTOR4--COPS6	2	2	LAMTOR4	1673	chr7:99747202:+	COPS6	11347	chr7:99689043:+	ONLY_REF_SPLICE	YES	359	727	0.01	0.01	0.0147	0.0147	LOCAL_REARRANGEMENT:+:[56707],LAMTOR4->chr7:99746530-99753567:+,late_endosomal/lysosomal_adaptor,_MAPK_and_MTOR_activator_4,COPS6->COP9_signalosome_subunit_6,chr7:99686577-99689823:+	SNU119_OVARY	0.01	0.01	0.0294	FALSE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	SH3RF1--CBR4	2	2	SH3RF1	3286	chr4:170189971:-	CBR4	25740	chr4:169923356:-	ONLY_REF_SPLICE	NO	33	31	0.11	0.11	0.0147	0.0147	NEIGHBORS[83981],SH3RF1->SH3_domain_containing_ring_finger_1,chr4:170015407-170192256:-,CBR4->carbonyl_reductase_4,chr4:169784921-169931426:-	SNU119_OVARY	0.11	0.11	0.0294	FALSE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	STARD7--TTC27	1	6	STARD7	1681	chr2:96873883:-	TTC27	25149	chr2:32958895:+	ONLY_REF_SPLICE	YES	312	30	0.02	0.19	0.0074	0.0442	STARD7->StAR_related_lipid_transfer_domain_containing_7,chr2:96850597-96874563:-,TTC27->chr2:32853099-33046118:+,tetratricopeptide_repeat_domain_27	SNU119_OVARY	0.02	0.19	0.0516	TRUE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	LAMTOR4--COPS6	2	1	LAMTOR4	1659	chr7:99747188:+	COPS6	11347	chr7:99689043:+	ONLY_REF_SPLICE	YES	215	727	0.01	0	0.0147	0.0074	LOCAL_REARRANGEMENT:+:[56707],LAMTOR4->chr7:99746530-99753567:+,late_endosomal/lysosomal_adaptor,_MAPK_and_MTOR_activator_4,COPS6->COP9_signalosome_subunit_6,chr7:99686577-99689823:+	SNU119_OVARY	0	0.01	0.0221	FALSE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	MALSU1--NUPL2	2	1	MALSU1	4486	chr7:23347568:+	NUPL2	12565	chr7:23224689:+	ONLY_REF_SPLICE	YES	332	248	0.01	0.01	0.0147	0.0074	LOCAL_REARRANGEMENT:+:[97728],MALSU1->chr7:23338358-23351348:+,mitochondrial_assembly_of_ribosomal_large_subunit_1,NUPL2->chr7:23221446-23240630:+,nucleoporin_like_2	SNU119_OVARY	0.01	0.01	0.0221	FALSE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0074	0.0369	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU119_OVARY	1	1	0.0443	FALSE	275	511	55	178	0	FALSE	ACH-000635
SNU119_OVARY	SREBF1--ATPAF2	2	1	SREBF1	1285	chr17:17740041:-	ATPAF2	18182	chr17:17931973:-	ONLY_REF_SPLICE	YES	45	94	0.06	0.03	0.0147	0.0074	SREBF1->chr17:17713713-17740325:-,sterol_regulatory_element_binding_transcription_factor_1,ATPAF2->ATP_synthase_mitochondrial_F1_complex_assembly_factor_2,chr17:17880723-17942523:-	SNU119_OVARY	0.03	0.06	0.0221	TRUE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	WDHD1--RP11-112J1.2	2	1	WDHD1	2507	chr14:55480203:-	RP11-112J1.2	37094	chr14:59475749:+	ONLY_REF_SPLICE	YES	126	0	0.02	1	0.0147	0.0074	WDHD1->WD_repeat_and_HMG-box_DNA_binding_protein_1,chr14:55405668-55493823:-,RP11-112J1.2->chr14:59294952-59484046:+	SNU119_OVARY	0.02	1	0.0221	TRUE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	CBFB--CES2	2	0	CBFB	5927	chr16:67116242:+	CES2	20653	chr16:66976551:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	LOCAL_REARRANGEMENT:+:[84020],CBFB->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:67063019-67134961:+,core-binding_factor,_beta_subunit,CES2->carboxylesterase_2,chr16:66968347-66978999:+	SNU119_OVARY	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	GCSH--CDYL2	2	0	GCSH	1273	chr16:81129736:-	CDYL2	20849	chr16:80646733:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	GCSH->chr16:81115566-81130008:-,glycine_cleavage_system_protein_H,CDYL2->chr16:80631803-80838226:-,chromodomain_protein,_Y-like_2	SNU119_OVARY	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	LIMCH1--UCHL1	2	0	LIMCH1	2330	chr4:41362953:+	UCHL1	57948	chr4:41266120:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},{Klijn_CCL:Breast=1},LOCAL_REARRANGEMENT:+:[91152],LIMCH1->LIM_and_calponin_homology_domains_1,chr4:41361624-41702061:+,UCHL1->chr4:41258430-41270472:+,ubiquitin_C-terminal_hydrolase_L1	SNU119_OVARY	1	1	0.0147	TRUE	0	1	0	1	1	TRUE	ACH-000635
SNU119_OVARY	NOD1--SKAP2	2	0	NOD1	1179	chr7:30518222:-	SKAP2	30793	chr7:26894509:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	NOD1->Oncogene{Bushman},chr7:30464143-30518400:-,nucleotide_binding_oligomerization_domain_containing_1,SKAP2->chr7:26706681-27034858:-,src_kinase_associated_phosphoprotein_2	SNU119_OVARY	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	PHGDH--RTN3	2	0	PHGDH	9819	chr1:120269725:+	RTN3	33485	chr11:63520541:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	PHGDH->chr1:120202421-120286838:+,phosphoglycerate_dehydrogenase,RTN3->chr11:63448918-63527363:+,reticulon_3	SNU119_OVARY	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	PPP1CB--RBKS	2	0	PPP1CB	1537	chr2:28975042:+	RBKS	24201	chr2:28069971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta,RBKS->chr2:28004231-28113965:-,ribokinase	SNU119_OVARY	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	SUPT16H--CHD8	2	0	SUPT16H	1405	chr14:21852021:-	CHD8	49786	chr14:21864051:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0147	0	LOCAL_REARRANGEMENT:-:[928],SUPT16H->SPT16_homolog,_facilitates_chromatin_remodeling_subunit,chr14:21819631-21852425:-,CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8	SNU119_OVARY	1	1	0.0147	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	LINC01036--LINC01037	1	3	LINC01036	2179	chr1:187272671:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0074	0.0221	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	SNU119_OVARY	1	1	0.0295	FALSE	0	1	0	5	0	FALSE	ACH-000635
SNU119_OVARY	FGF14-IT1--FGF14	1	2	FGF14-IT1	1762	chr13:103046108:-	FGF14	13042	chr13:102527646:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0074	0.0147	GTEx_FI:{Testis=[count:80=pct:76.2],Brain=[count:43=pct:6.5],Lung=[count:3=pct:1.8],Nerve=[count:1=pct:0.6],Kidney=[count:1=pct:7.1],Thyroid=[count:1=pct:0.6]},FGF14-IT1->FGF14_intronic_transcript_1,chr13:102944677-103046869:-,FGF14->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr13:102372134-103054124:-,fibroblast_growth_factor_14	SNU119_OVARY	1	1	0.0221	TRUE	71	201	23	28	0	FALSE	ACH-000635
SNU119_OVARY	BCORL1--ZNF280C	1	1	BCORL1	14442	chrX:129162836:+	ZNF280C	28628	chrX:129380979:-	ONLY_REF_SPLICE	YES	38	9	0.05	0.18	0.0074	0.0074	BCORL1->ArcherDX_panel,BCL6_corepressor-like_1,FoundationOne_panel,chrX:129115083-129192058:+,ZNF280C->chrX:129336685-129402873:-,zinc_finger_protein_280C	SNU119_OVARY	0.05	0.18	0.0148	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	CCDC122--ENOX1	1	1	CCDC122	2147	chr13:44448978:-	ENOX1	17207	chr13:44241680:-	ONLY_REF_SPLICE	YES	17	0	0.11	1	0.0074	0.0074	NEIGHBORS[37001],CCDC122->chr13:44398045-44453827:-,coiled-coil_domain_containing_122,ENOX1->chr13:43787654-44361044:-,ecto-NOX_disulfide-thiol_exchanger_1	SNU119_OVARY	0.11	1	0.0148	FALSE	39	52	2	34	0	FALSE	ACH-000635
SNU119_OVARY	HOXC10--HOXC13	1	1	HOXC10	1946	chr12:54379794:+	HOXC13	9626	chr12:54338784:+	ONLY_REF_SPLICE	YES	17	21	0.11	0.09	0.0074	0.0074	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[38521],HOXC10->chr12:54378849-54384063:+,homeobox_C10,HOXC13->Oncogene{Bushman},chr12:54332535-54340328:+,homeobox_C13	SNU119_OVARY	0.09	0.11	0.0148	TRUE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	PIGC--DNM3OS	1	1	PIGC	5815	chr1:172368959:-	DNM3OS	18724	chr1:172113577:-	ONLY_REF_SPLICE	YES	28	0	0.07	1	0.0074	0.0074	PIGC->chr1:172339329-172413230:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_C,DNM3OS->DNM3_opposite_strand/antisense_RNA,chr1:172109461-172113934:-	SNU119_OVARY	0.07	1	0.0148	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	PTPRK--CTD-2349B8.1	1	1	PTPRK	5969	chr6:128718711:-	CTD-2349B8.1	58465	chr16:19184082:+	ONLY_REF_SPLICE	YES	48	0	0.04	1	0.0074	0.0074	PTPRK->Oncogene{Bushman},chr6:128289924-128841870:-,protein_tyrosine_phosphatase,_receptor_type_K,CTD-2349B8.1->chr16:19125324-19184900:+	SNU119_OVARY	0.04	1	0.0148	TRUE	0	0	0	1	0	TRUE	ACH-000635
SNU119_OVARY	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	1	2	0.67	0.5	0.0074	0.0074	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SNU119_OVARY	0.5	0.67	0.0148	FALSE	0	23	1	67	0	FALSE	ACH-000635
SNU119_OVARY	TBL1XR1--RP11-706D8.3	1	1	TBL1XR1	5415	chr3:176816254:-	RP11-706D8.3	34353	chr3:177056312:-	ONLY_REF_SPLICE	YES	200	0	0.01	1	0.0074	0.0074	TBL1XR1->chr3:176737143-176915261:-,transducin_(beta)-like_1_X-linked_receptor_1,RP11-706D8.3->chr3:177055416-177066954:-	SNU119_OVARY	0.01	1	0.0148	FALSE	0	1	0	1	1	FALSE	ACH-000635
SNU119_OVARY	TPX2--COX4I2	1	1	TPX2	17846	chr20:30382351:+	COX4I2	25907	chr20:30226821:+	ONLY_REF_SPLICE	YES	317	0	0.01	1	0.0074	0.0074	LOCAL_REARRANGEMENT:+:[94265],TPX2->TPX2,_microtubule_nucleation_factor,chr20:30327074-30389608:+,COX4I2->chr20:30225691-30232809:+,cytochrome_c_oxidase_subunit_4I2	SNU119_OVARY	0.01	1	0.0148	FALSE	0	0	0	1	0	FALSE	ACH-000635
SNU119_OVARY	TRNAU1AP--TAF12	1	1	TRNAU1AP	1653	chr1:28880249:+	TAF12	17350	chr1:28948677:-	ONLY_REF_SPLICE	NO	130	13	0.02	0.13	0.0074	0.0074	LOCAL_INVERSION:+:-:[10784],TRNAU1AP->chr1:28879597-28905051:+,tRNA_selenocysteine_1_associated_protein_1,TAF12->TATA-box_binding_protein_associated_factor_12,chr1:28915835-28969597:-	SNU119_OVARY	0.02	0.13	0.0148	TRUE	0	0	0	2	0	FALSE	ACH-000635
SLR23_KIDNEY	MTAP--RP11-814P5.1	113	54	MTAP	8659	chr9:21838009:+	RP11-814P5.1	24302	chr15:35069472:+	ONLY_REF_SPLICE	YES	110	0	0.6	1	1.4792	0.7069	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-814P5.1->chr15:35047285-35105124:+	SLR23_KIDNEY	0.6	1	2.1861	TRUE	0	0	0	1	0	TRUE	ACH-000246
SLR23_KIDNEY	TIMM23B--LINC00843	81	28	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	1.0603	0.3665	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SLR23_KIDNEY	0.98	1	1.4268	TRUE	508	994	45	981	0	FALSE	ACH-000246
SLR23_KIDNEY	TIMM23--RP11-464F9.1	53	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	416	17	0.12	0.76	0.6938	0.0262	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SLR23_KIDNEY	0.12	0.76	0.72	TRUE	519	3926	326	965	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	39	54	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	12	0	0.89	1	0.5105	0.7069	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.89	1	1.2174	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-TA--MT-TC	45	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5891	0.0393	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR23_KIDNEY	1	1	0.6284	FALSE	462	80	0	856	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	35	27	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	6219	21	0.01	0.75	0.4582	0.3534	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.01	0.75	0.8116	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	14	67	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1833	0.877	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	1	1	1.0603	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	25	22	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10194	133	0	0.26	0.3273	0.288	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0	0.26	0.6153	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	ZNF654--HMGB2	25	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3273	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SLR23_KIDNEY	1	1	0.3273	TRUE	0	0	0	518	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	16	33	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	12	681	0.8	0.07	0.2094	0.432	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.07	0.8	0.6414	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	14	32	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	10020	0	0	1	0.1833	0.4189	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0	1	0.6022	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	5	66	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0655	0.864	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	1	1	0.9295	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	70	MT-ND5	2835	chrM:14171:+	MT-ATP8	5865	chrM:8418:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0.9163	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	1	1	0.9556	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	69	MT-ND5	2795	chrM:14131:+	MT-ATP8	5859	chrM:8412:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0.9032	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	1	1	0.9425	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	58	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	7	0	0.9	1	0.0393	0.7592	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.9	1	0.7985	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	C15orf57--CBX3	12	20	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	91	42	0.26	0.43	0.1571	0.2618	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SLR23_KIDNEY	0.26	0.43	0.4189	TRUE	267	562	48	632	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	56	MT-ND5	2749	chrM:14085:+	MT-ATP8	5896	chrM:8449:+	INCL_NON_REF_SPLICE	YES	6	0	0.91	1	0.0393	0.733	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.91	1	0.7723	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	15	4	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	10526	7	0	0.73	0.1964	0.0524	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0	0.73	0.2488	FALSE	41	30	6	102	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	5	43	MT-ND5	2644	chrM:13980:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	3098	0	0.02	1	0.0655	0.5629	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.02	1	0.6284	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	5	43	MT-ND5	2712	chrM:14048:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	YES	23	7	0.68	0.87	0.0655	0.5629	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.68	0.87	0.6284	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	C15orf57--CBX3	11	17	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	86	42	0.25	0.4	0.144	0.2225	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SLR23_KIDNEY	0.25	0.4	0.3665	TRUE	267	562	48	632	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	5	41	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17	21	0.73	0.69	0.0655	0.5367	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.69	0.73	0.6022	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	44	MT-ND5	2649	chrM:13985:+	MT-ATP8	5821	chrM:8374:+	INCL_NON_REF_SPLICE	YES	2915	0	0.02	1	0.0393	0.576	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.02	1	0.6153	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	5	36	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	5220	0	0.01	1	0.0655	0.4712	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.01	1	0.5367	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	44	MT-ND5	2675	chrM:14011:+	MT-ATP8	5892	chrM:8445:+	INCL_NON_REF_SPLICE	YES	1752	0	0.03	1	0.0393	0.576	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.03	1	0.6153	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	6	26	MT-ND5	2303	chrM:13639:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5096	133	0.01	0.19	0.0785	0.3403	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.01	0.19	0.4188	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	37	MT-ND5	2394	chrM:13730:+	MT-ATP8	5872	chrM:8425:+	INCL_NON_REF_SPLICE	YES	4678	0	0.01	1	0.0393	0.4843	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.01	1	0.5236	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	36	MT-ND5	2247	chrM:13583:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	6163	0	0.01	1	0.0393	0.4712	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.01	1	0.5105	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	35	MT-ND5	2687	chrM:14023:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	1192	21	0.03	0.64	0.0393	0.4582	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.03	0.64	0.4975	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	4	24	MT-ND5	2641	chrM:13977:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	3304	1081	0.01	0.03	0.0524	0.3142	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.01	0.03	0.3666	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	28	MT-ND5	2449	chrM:13785:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	YES	4740	16	0.01	0.66	0.0393	0.3665	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.01	0.66	0.4058	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	28	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	6997	0	0	1	0.0393	0.3665	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0	1	0.4058	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	4	21	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	5437	1390	0	0.02	0.0524	0.2749	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0	0.02	0.3273	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	4	17	MT-ND5	1717	chrM:13053:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	NO	6393	0	0	1	0.0524	0.2225	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0	1	0.2749	FALSE	42	36	7	104	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	18	MT-ND5	1802	chrM:13138:+	MT-ATP8	5891	chrM:8444:+	INCL_NON_REF_SPLICE	YES	5985	0	0	1	0.0393	0.2356	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0	1	0.2749	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	18	MT-ND5	2004	chrM:13340:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	9389	681	0	0.03	0.0393	0.2356	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0	0.03	0.2749	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	17	MT-ND5	1795	chrM:13131:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	6135	0	0	1	0.0393	0.2225	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0	1	0.2618	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	15	MT-ND5	2287	chrM:13623:+	MT-ATP8	5959	chrM:8512:+	INCL_NON_REF_SPLICE	YES	5245	2107	0	0.01	0.0393	0.1964	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0	0.01	0.2357	FALSE	43	37	8	105	0	FALSE	ACH-000246
SLR23_KIDNEY	DTL--PPP2R5A	5	5	DTL	1366	chr1:212209284:+	PPP2R5A	28627	chr1:212502477:+	ONLY_REF_SPLICE	YES	99	53	0.09	0.16	0.0655	0.0655	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	SLR23_KIDNEY	0.09	0.16	0.131	TRUE	0	0	0	3	0	TRUE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	13	MT-ND5	1628	chrM:12964:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	7929	0	0	1	0.0393	0.1702	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0	1	0.2095	FALSE	42	36	7	104	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	13	MT-ND5	1635	chrM:12971:+	MT-ATP8	5887	chrM:8440:+	INCL_NON_REF_SPLICE	YES	7671	0	0	1	0.0393	0.1702	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0	1	0.2095	FALSE	42	36	7	104	0	FALSE	ACH-000246
SLR23_KIDNEY	APP--MT-ND2	6	0	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0785	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SLR23_KIDNEY	1	1	0.0785	FALSE	0	1	0	51	0	FALSE	ACH-000246
SLR23_KIDNEY	MTAP--RP11-814P5.1	1	20	MTAP	7556	chr9:21818201:+	RP11-814P5.1	24302	chr15:35069472:+	ONLY_REF_SPLICE	YES	101	0	0.17	1	0.0131	0.2618	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-814P5.1->chr15:35047285-35105124:+	SLR23_KIDNEY	0.17	1	0.2749	TRUE	0	0	0	1	0	TRUE	ACH-000246
SLR23_KIDNEY	NRIP1--AF127936.7	6	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0785	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR23_KIDNEY	1	1	0.0785	FALSE	292	1546	117	613	0	FALSE	ACH-000246
SLR23_KIDNEY	SLC35C1--CTD-2210P24.4	5	4	SLC35C1	3265	chr11:45827887:+	CTD-2210P24.4	9703	chr11:45793180:+	INCL_NON_REF_SPLICE	YES	70	0	0.11	1	0.0655	0.0524	LOCAL_REARRANGEMENT:+:[31714],SLC35C1->chr11:45825623-45834566:+,solute_carrier_family_35_member_C1,CTD-2210P24.4->chr11:45792983-45793909:+	SLR23_KIDNEY	0.11	1	0.1179	TRUE	0	0	0	1	0	TRUE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ND6	4	7	MT-ND5	2761	chrM:14097:+	MT-ND6	6169	chrM:14317:-	INCL_NON_REF_SPLICE	YES	1	5291	0.92	0	0.0524	0.0916	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SLR23_KIDNEY	0	0.92	0.144	FALSE	26	124	4	93	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	10	MT-ND5	1575	chrM:12911:+	MT-ATP8	5869	chrM:8422:+	INCL_NON_REF_SPLICE	YES	6992	0	0	1	0.0393	0.1309	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0	1	0.1702	FALSE	42	36	7	104	0	FALSE	ACH-000246
SLR23_KIDNEY	RP11-123O10.4--GRIP1	5	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0655	0.0262	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SLR23_KIDNEY	1	1	0.0917	FALSE	416	2512	207	587	0	FALSE	ACH-000246
SLR23_KIDNEY	LTBP2--AREL1	4	3	LTBP2	25395	chr14:74973401:-	AREL1	59978	chr14:75127643:-	ONLY_REF_SPLICE	YES	120	0	0.06	1	0.0524	0.0393	LOCAL_REARRANGEMENT:-:[40834],LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2,AREL1->apoptosis_resistant_E3_ubiquitin_protein_ligase_1,chr14:75120140-75179818:-	SLR23_KIDNEY	0.06	1	0.0917	TRUE	0	0	0	1	0	TRUE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	7	MT-ND5	1570	chrM:12906:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	7547	21	0	0.32	0.0393	0.0916	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0	0.32	0.1309	FALSE	42	36	7	104	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ND6	3	6	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	5	5181	0.64	0	0.0393	0.0785	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	SLR23_KIDNEY	0	0.64	0.1178	FALSE	26	124	4	93	0	FALSE	ACH-000246
SLR23_KIDNEY	RPS2--NOXO1	4	1	RPS2	1585	chr16:2014277:-	NOXO1	10935	chr16:2029543:-	ONLY_REF_SPLICE	YES	8802	7	0	0.42	0.0524	0.0131	LOCAL_REARRANGEMENT:-:[14057],RPS2->chr16:2012053-2014861:-,ribosomal_protein_S2,NOXO1->NADPH_oxidase_organizer_1,chr16:2028918-2034193:-	SLR23_KIDNEY	0	0.42	0.0655	FALSE	0	0	0	1	0	FALSE	ACH-000246
SLR23_KIDNEY	NPM1P24--SET	4	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0524	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SLR23_KIDNEY	1	1	0.0524	TRUE	0	0	0	434	0	FALSE	ACH-000246
SLR23_KIDNEY	CDKN2A--IFNWP2	3	3	CDKN2A	5457	chr9:21974677:-	IFNWP2	13545	chr9:21420397:+	INCL_NON_REF_SPLICE	YES	3	0	0.67	1	0.0393	0.0393	CDKN2A->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr9:21967751-21995300:-,cyclin-dependent_kinase_inhibitor_2A,IFNWP2->chr9:21420233-21420812:+,interferon,_omega_1_pseudogene_2	SLR23_KIDNEY	0.67	1	0.0786	TRUE	0	0	0	1	0	TRUE	ACH-000246
SLR23_KIDNEY	LTBP2--AREL1	3	3	LTBP2	26045	chr14:74972751:-	AREL1	59978	chr14:75127643:-	ONLY_REF_SPLICE	YES	91	0	0.06	1	0.0393	0.0393	LOCAL_REARRANGEMENT:-:[40834],LTBP2->chr14:74964873-75079306:-,latent_transforming_growth_factor_beta_binding_protein_2,AREL1->apoptosis_resistant_E3_ubiquitin_protein_ligase_1,chr14:75120140-75179818:-	SLR23_KIDNEY	0.06	1	0.0786	TRUE	0	0	0	1	0	TRUE	ACH-000246
SLR23_KIDNEY	MT-TA--MT-TC	3	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0.0393	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR23_KIDNEY	1	1	0.0786	FALSE	462	80	0	856	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	2	MT-ND5	1055	chrM:12391:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	456	0	0.01	1	0.0393	0.0262	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.01	1	0.0655	FALSE	34	25	3	77	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-ND5--MT-ATP8	3	2	MT-ND5	1012	chrM:12348:+	MT-ATP8	5907	chrM:8460:+	INCL_NON_REF_SPLICE	YES	272	2	0.02	0.71	0.0393	0.0262	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	SLR23_KIDNEY	0.02	0.71	0.0655	FALSE	34	25	3	77	0	FALSE	ACH-000246
SLR23_KIDNEY	NRIP1--AF127936.7	3	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	29	0	0.15	1	0.0393	0.0262	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR23_KIDNEY	0.15	1	0.0655	FALSE	164	806	69	479	0	FALSE	ACH-000246
SLR23_KIDNEY	APP--MT-ND2	3	1	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	2981	7820	0	0	0.0393	0.0131	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SLR23_KIDNEY	0	0	0.0524	FALSE	0	1	0	51	0	FALSE	ACH-000246
SLR23_KIDNEY	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SLR23_KIDNEY	1	1	0.0393	FALSE	462	80	0	856	0	FALSE	ACH-000246
SLR23_KIDNEY	DTL--PPP2R5A	1	5	DTL	1366	chr1:212209284:+	PPP2R5A	26408	chr1:212487109:+	ONLY_REF_SPLICE	YES	99	54	0.06	0.1	0.0131	0.0655	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	SLR23_KIDNEY	0.06	0.1	0.0786	TRUE	0	0	0	1	0	FALSE	ACH-000246
SLR23_KIDNEY	MTAP--RP11-814P5.1	2	1	MTAP	8659	chr9:21838009:+	RP11-814P5.1	25463	chr15:35082008:+	ONLY_REF_SPLICE	YES	110	1	0.03	0.75	0.0262	0.0131	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-814P5.1->chr15:35047285-35105124:+	SLR23_KIDNEY	0.03	0.75	0.0393	TRUE	0	0	0	1	0	FALSE	ACH-000246
SLR23_KIDNEY	C17orf76-AS1--ANXA2	2	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	SLR23_KIDNEY	1	1	0.0262	TRUE	0	0	0	10	0	TRUE	ACH-000246
SLR23_KIDNEY	RAB7A--VCP	2	0	RAB7A	6199	chr3:128526514:+	VCP	22285	chr9:35059798:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0262	0	RAB7A->RAB7A,_member_RAS_oncogene_family,chr3:128444965-128533639:+,VCP->chr9:35056061-35073246:-,valosin_containing_protein	SLR23_KIDNEY	1	1	0.0262	TRUE	0	0	0	1	0	TRUE	ACH-000246
SLR23_KIDNEY	DTL--PPP2R5A	1	3	DTL	1366	chr1:212209284:+	PPP2R5A	29824	chr1:212506839:+	ONLY_REF_SPLICE	NO	99	46	0.04	0.08	0.0131	0.0393	DTL->chr1:212208919-212280742:+,denticleless_E3_ubiquitin_protein_ligase_homolog,PPP2R5A->chr1:212458879-212535200:+,protein_phosphatase_2_regulatory_subunit_B',_alpha	SLR23_KIDNEY	0.04	0.08	0.0524	TRUE	0	0	0	1	0	FALSE	ACH-000246
SLR23_KIDNEY	NPNT--TBCK	1	2	NPNT	3050	chr4:106819158:+	TBCK	57435	chr4:107092427:-	ONLY_REF_SPLICE	NO	248	65	0.01	0.04	0.0131	0.0262	GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Lung=1,Artery_-_Aorta=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[37572],NPNT->chr4:106815932-106925184:+,nephronectin,TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-	SLR23_KIDNEY	0.01	0.04	0.0393	FALSE	0	1	0	1	0	FALSE	ACH-000246
SLR23_KIDNEY	NPNT--TBCK	1	2	NPNT	3050	chr4:106819158:+	TBCK	52942	chr4:107133992:-	ONLY_REF_SPLICE	NO	248	112	0.01	0.03	0.0131	0.0262	GTEx_v2:{count=4;pct=0.05%;dist=Artery_-_Tibial=1,Lung=1,Artery_-_Aorta=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[37572],NPNT->chr4:106815932-106925184:+,nephronectin,TBCK->TBC1_domain_containing_kinase,chr4:106962756-107242652:-	SLR23_KIDNEY	0.01	0.03	0.0393	FALSE	0	0	0	1	0	FALSE	ACH-000246
SLR23_KIDNEY	NRIP1--AF127936.7	1	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	26	0	0.07	1	0.0131	0.0131	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SLR23_KIDNEY	0.07	1	0.0262	FALSE	125	705	46	456	0	FALSE	ACH-000246
HS895T_FIBROBLAST	TIMM23B--LINC00843	139	43	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6398	0.5073	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS895T_FIBROBLAST	1	1	2.1471	TRUE	508	994	45	981	0	FALSE	ACH-000043
HS895T_FIBROBLAST	TIMM23--RP11-464F9.1	79	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	347	2	0.19	0.98	0.932	0.0354	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS895T_FIBROBLAST	0.19	0.98	0.9674	TRUE	519	3926	326	965	0	FALSE	ACH-000043
HS895T_FIBROBLAST	PLXDC1--TAF13	51	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6017	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HS895T_FIBROBLAST	1	1	0.6017	TRUE	7	10	0	216	0	FALSE	ACH-000043
HS895T_FIBROBLAST	MT-TA--MT-TC	42	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4955	0.0826	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS895T_FIBROBLAST	1	1	0.5781	FALSE	462	80	0	856	0	FALSE	ACH-000043
HS895T_FIBROBLAST	MIPEPP3--ABHD12	35	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4129	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	HS895T_FIBROBLAST	1	1	0.4129	TRUE	64	202	9	44	0	FALSE	ACH-000043
HS895T_FIBROBLAST	KANSL1--ARL17B	28	12	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	17	20	0.7	0.67	0.3303	0.1416	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	HS895T_FIBROBLAST	0.67	0.7	0.4719	TRUE	181	1564	124	196	0	FALSE	ACH-000043
HS895T_FIBROBLAST	MT-ND6--MT-TE	23	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2713	0.0118	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS895T_FIBROBLAST	1	1	0.2831	FALSE	499	1288	110	792	0	FALSE	ACH-000043
HS895T_FIBROBLAST	NRIP1--AF127936.7	22	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.76	1	0.2595	0.0472	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS895T_FIBROBLAST	0.76	1	0.3067	FALSE	292	1546	117	613	0	FALSE	ACH-000043
HS895T_FIBROBLAST	RP11-680G10.1--GSE1	19	6	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	13	1	0.66	0.2242	0.0708	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS895T_FIBROBLAST	0.66	1	0.295	TRUE	465	1949	224	605	0	FALSE	ACH-000043
HS895T_FIBROBLAST	RP11-444D3.1--SOX5	18	5	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.2124	0.059	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS895T_FIBROBLAST	1	1	0.2714	TRUE	477	1352	189	275	0	FALSE	ACH-000043
HS895T_FIBROBLAST	IGFBP4--NPM1	18	1	IGFBP4	5124	chr17:38613111:+	NPM1	9734	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	3065	2	0.01	0.9	0.2124	0.0118	IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HS895T_FIBROBLAST	0.01	0.9	0.2242	TRUE	0	0	0	38	0	FALSE	ACH-000043
HS895T_FIBROBLAST	RP11-680G10.1--GSE1	15	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	2	1	0.92	0.177	0.1062	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS895T_FIBROBLAST	0.92	1	0.2832	TRUE	458	1351	185	561	0	FALSE	ACH-000043
HS895T_FIBROBLAST	PRR16--CTD-2334D19.1	14	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	92	0	0.17	1	0.1652	0.059	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS895T_FIBROBLAST	0.17	1	0.2242	FALSE	56	216	12	147	0	FALSE	ACH-000043
HS895T_FIBROBLAST	MT-ND6--MT-TE	9	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1062	0.118	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS895T_FIBROBLAST	0.95	1	0.2242	FALSE	499	1288	110	792	0	FALSE	ACH-000043
HS895T_FIBROBLAST	RP4-565E6.1--HYDIN	10	5	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.118	0.059	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS895T_FIBROBLAST	1	1	0.177	TRUE	456	1387	91	133	0	FALSE	ACH-000043
HS895T_FIBROBLAST	MT-ND6--MT-TE	10	1	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.118	0.0118	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS895T_FIBROBLAST	1	1	0.1298	FALSE	499	1288	110	792	0	FALSE	ACH-000043
HS895T_FIBROBLAST	ADIRF-AS1--LGALS1	8	1	ADIRF-AS1	3782	chr10:88728287:-	LGALS1	10007	chr22:38071654:+	INCL_NON_REF_SPLICE	YES	34	0	0.21	1	0.0944	0.0118	ADIRF-AS1->ADIRF_antisense_RNA_1,chr10:88725102-88731068:-,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	HS895T_FIBROBLAST	0.21	1	0.1062	TRUE	0	0	0	5	0	TRUE	ACH-000043
HS895T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	7	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.0826	0.0118	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS895T_FIBROBLAST	0.8	1	0.0944	FALSE	515	4851	409	746	0	FALSE	ACH-000043
HS895T_FIBROBLAST	MT-TA--MT-TC	7	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0826	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS895T_FIBROBLAST	1	1	0.0826	FALSE	462	80	0	856	0	FALSE	ACH-000043
HS895T_FIBROBLAST	NRIP1--AF127936.7	5	7	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	29	0	0.29	1	0.059	0.0826	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS895T_FIBROBLAST	0.29	1	0.1416	FALSE	164	806	69	479	0	FALSE	ACH-000043
HS895T_FIBROBLAST	MT-TA--MT-TC	4	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0.059	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS895T_FIBROBLAST	1	1	0.1062	FALSE	462	80	0	856	0	FALSE	ACH-000043
HS895T_FIBROBLAST	RP11-353N4.6--SEC22B	5	1	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	16	951	0.27	0.01	0.059	0.0118	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HS895T_FIBROBLAST	0.01	0.27	0.0708	FALSE	49	42	7	43	0	FALSE	ACH-000043
HS895T_FIBROBLAST	RP11-444D3.1--SOX5	4	5	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0472	0.059	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS895T_FIBROBLAST	1	1	0.1062	TRUE	274	363	69	150	0	FALSE	ACH-000043
HS895T_FIBROBLAST	FGF5--LINC01088	5	0	FGF5	3989	chr4:81196166:+	LINC01088	32219	chr4:80229427:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.059	0	FGF5->Oncogene{Bushman},chr4:81187753-81257834:+,fibroblast_growth_factor_5,LINC01088->chr4:79892902-80229952:+,long_intergenic_non-protein_coding_RNA_1088	HS895T_FIBROBLAST	1	1	0.059	TRUE	0	0	0	1	0	TRUE	ACH-000043
HS895T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.75	1	0.0472	0.0236	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS895T_FIBROBLAST	0.75	1	0.0708	FALSE	407	2205	196	549	0	FALSE	ACH-000043
HS895T_FIBROBLAST	DNAJC25--UGCG	4	1	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	229	253	0.02	0.02	0.0472	0.0118	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	HS895T_FIBROBLAST	0.02	0.02	0.059	TRUE	50	73	10	50	0	FALSE	ACH-000043
HS895T_FIBROBLAST	RNF152--RP11-879F14.1	4	1	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	12	0	0.29	1	0.0472	0.0118	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	HS895T_FIBROBLAST	0.29	1	0.059	FALSE	275	472	65	43	0	FALSE	ACH-000043
HS895T_FIBROBLAST	IGFBP4--S100A6	4	0	IGFBP4	3668	chr17:38610269:+	S100A6	9247	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HS895T_FIBROBLAST	1	1	0.0472	TRUE	0	0	0	4	0	TRUE	ACH-000043
HS895T_FIBROBLAST	MT-TA--MT-TC	3	3	MT-TA	1047	chrM:5609:-	MT-TC	4017	chrM:5879:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0.0354	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HS895T_FIBROBLAST	1	1	0.0708	FALSE	462	80	0	856	0	FALSE	ACH-000043
HS895T_FIBROBLAST	RP11-353N4.6--SEC22B	3	2	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	17979	chr1:145103908:+	ONLY_REF_SPLICE	YES	16	944	0.24	0.01	0.0354	0.0236	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HS895T_FIBROBLAST	0.01	0.24	0.059	FALSE	33	36	9	21	0	FALSE	ACH-000043
HS895T_FIBROBLAST	JSRP1--RPS28	3	0	JSRP1	1210	chr19:2269549:-	RPS28	10760	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx_v2:{count=19;pct=0.22%;dist=Cells_-_EBV-transformed_lymphocytes=15,Cells_-_Transformed_fibroblasts=4},JSRP1->chr19:2252251-2269758:-,junctional_sarcoplasmic_reticulum_protein_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HS895T_FIBROBLAST	1	1	0.0354	TRUE	0	1	0	84	1	FALSE	ACH-000043
HS895T_FIBROBLAST	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS895T_FIBROBLAST	1	1	0.0354	FALSE	499	1288	110	792	0	FALSE	ACH-000043
HS895T_FIBROBLAST	MT-ND6--MT-TE	3	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS895T_FIBROBLAST	1	1	0.0354	FALSE	499	1288	110	792	0	FALSE	ACH-000043
HS895T_FIBROBLAST	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	HS895T_FIBROBLAST	1	1	0.0354	TRUE	22	156	2	142	0	FALSE	ACH-000043
HS895T_FIBROBLAST	PRR16--CTD-2334D19.1	1	5	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	12267	chr5:120116913:+	ONLY_REF_SPLICE	YES	92	0	0.06	1	0.0118	0.059	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS895T_FIBROBLAST	0.06	1	0.0708	FALSE	1	13	0	24	0	FALSE	ACH-000043
HS895T_FIBROBLAST	PRR16--CTD-2334D19.1	1	5	PRR16	3559	chr5:119816988:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	102	0	0.06	1	0.0118	0.059	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HS895T_FIBROBLAST	0.06	1	0.0708	FALSE	1	5	0	12	0	FALSE	ACH-000043
HS895T_FIBROBLAST	RP11-254I22.1--CTD-2337A12.1	2	1	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0.0118	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HS895T_FIBROBLAST	1	1	0.0354	TRUE	6	15	3	35	0	FALSE	ACH-000043
HS895T_FIBROBLAST	RP11-353N4.6--SEC22B	2	1	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	12	951	0.2	0	0.0236	0.0118	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HS895T_FIBROBLAST	0	0.2	0.0354	FALSE	49	42	7	43	0	FALSE	ACH-000043
HS895T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0236	0.0118	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS895T_FIBROBLAST	0.5	1	0.0354	FALSE	467	2173	244	435	0	FALSE	ACH-000043
HS895T_FIBROBLAST	GLTP--EMC4	2	0	GLTP	3433	chr12:110295331:-	EMC4	13811	chr15:34520630:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GLTP->chr12:110288748-110318293:-,glycolipid_transfer_protein,EMC4->ER_membrane_protein_complex_subunit_4,chr15:34517200-34522357:+	HS895T_FIBROBLAST	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000043
HS895T_FIBROBLAST	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS895T_FIBROBLAST	1	1	0.0236	FALSE	25	145	6	90	0	FALSE	ACH-000043
HS895T_FIBROBLAST	CTC-786C10.1--GSE1	1	2	CTC-786C10.1	1532	chr16:85205413:+	GSE1	9362	chr16:85682158:+	ONLY_REF_SPLICE	YES	1	13	0.75	0.19	0.0118	0.0236	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2]},CTC-786C10.1->chr16:85204882-85218969:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS895T_FIBROBLAST	0.19	0.75	0.0354	TRUE	2	3	0	21	0	FALSE	ACH-000043
HS895T_FIBROBLAST	RNF152--RP11-879F14.1	1	2	RNF152	2453	chr18:59560028:-	RP11-879F14.1	20108	chr18:59360506:-	ONLY_REF_SPLICE	YES	12	0	0.2	1	0.0118	0.0236	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	HS895T_FIBROBLAST	0.2	1	0.0354	FALSE	119	124	24	18	0	FALSE	ACH-000043
HS895T_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0118	0.0236	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HS895T_FIBROBLAST	0.5	1	0.0354	FALSE	192	492	57	212	0	FALSE	ACH-000043
HS895T_FIBROBLAST	ARID2--SCAF11	1	1	ARID2	2571	chr12:46125097:+	SCAF11	38028	chr12:46357971:-	ONLY_REF_SPLICE	YES	8	74	0.2	0.03	0.0118	0.0118	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},LOCAL_INVERSION:+:-:[11091],ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,SCAF11->SR-related_CTD_associated_factor_11,chr12:46312914-46385903:-	HS895T_FIBROBLAST	0.03	0.2	0.0236	TRUE	0	1	0	1	1	FALSE	ACH-000043
HS895T_FIBROBLAST	RP11-466I1.1--CTD-3012A18.1	1	1	RP11-466I1.1	2424	chr11:29233312:+	CTD-3012A18.1	8905	chr11:29573907:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0118	0.0118	RP11-466I1.1->chr11:29181503-29288281:+,CTD-3012A18.1->chr11:29540623-29574186:+	HS895T_FIBROBLAST	1	1	0.0236	TRUE	0	2	0	4	2	TRUE	ACH-000043
HS895T_FIBROBLAST	RPSAP52--HMGA2	1	1	RPSAP52	1132	chr12:66220623:-	HMGA2	8396	chr12:66221781:+	ONLY_REF_SPLICE	YES	29	241	0.06	0.01	0.0118	0.0118	NEIGHBORS_OVERLAP:-:+:[2843],RPSAP52->chr12:66151800-66220754:-,ribosomal_protein_SA_pseudogene_52,HMGA2->Oncogene{Bushman},chr12:66217911-66360075:+,high_mobility_group_AT-hook_2	HS895T_FIBROBLAST	0.01	0.06	0.0236	FALSE	0	59	0	125	0	FALSE	ACH-000043
HS895T_FIBROBLAST	TOMM7--STEAP1B	1	1	TOMM7	3034	chr7:22857619:-	STEAP1B	11272	chr7:22534505:-	ONLY_REF_SPLICE	YES	1755	9	0	0.18	0.0118	0.0118	TOMM7->chr7:22852251-22862470:-,translocase_of_outer_mitochondrial_membrane_7,STEAP1B->STEAP_family_member_1B,chr7:22459063-22672544:-	HS895T_FIBROBLAST	0	0.18	0.0236	FALSE	0	0	0	2	0	FALSE	ACH-000043
HS895T_FIBROBLAST	UBXN4--MYH9	1	1	UBXN4	4876	chr2:136511137:+	MYH9	31502	chr22:36716941:-	ONLY_REF_SPLICE	NO	259	459	0.01	0	0.0118	0.0118	UBXN4->UBX_domain_protein_4,chr2:136499189-136542625:+,MYH9->Oncogene{Bushman},chr22:36677327-36784063:-,myosin,_heavy_chain_9,_non-muscle	HS895T_FIBROBLAST	0	0.01	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000043
LCLC103H_LUNG	TIMM23B--LINC00843	103	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6122	0.5322	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LCLC103H_LUNG	1	1	2.1444	TRUE	508	994	45	981	0	FALSE	ACH-000627
LCLC103H_LUNG	TIMM23--RP11-464F9.1	67	6	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	287	4	0.2	0.95	1.0487	0.0939	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LCLC103H_LUNG	0.2	0.95	1.1426	TRUE	519	3926	326	965	0	FALSE	ACH-000627
LCLC103H_LUNG	ELFN2--NF2	61	23	ELFN2	4988	chr22:37813808:-	NF2	36217	chr22:30090741:+	ONLY_REF_SPLICE	YES	10	5	0.89	0.94	0.9548	0.36	ELFN2->chr22:37764000-37823505:-,extracellular_leucine-rich_repeat_and_fibronectin_type_III_domain_containing_2,NF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:29999545-30094587:+,neurofibromin_2_(merlin)	LCLC103H_LUNG	0.89	0.94	1.3148	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	MIPEPP3--ABHD12	57	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8922	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	LCLC103H_LUNG	1	1	0.8922	TRUE	64	202	9	44	0	FALSE	ACH-000627
LCLC103H_LUNG	RABL6--CDC16	43	45	RABL6	11743	chr9:139726822:+	CDC16	26059	chr13:115004465:+	ONLY_REF_SPLICE	YES	259	88	0.25	0.5	0.6731	0.7044	RABL6->RAB,_member_RAS_oncogene_family-like_6,chr9:139702374-139735639:+,CDC16->cell_division_cycle_16,chr13:115000362-115038198:+	LCLC103H_LUNG	0.25	0.5	1.3775	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	ATG16L1--INPP5D	36	23	ATG16L1	15194	chr2:234189821:+	INPP5D	39784	chr2:234070370:+	ONLY_REF_SPLICE	YES	50	0	0.54	1	0.5635	0.36	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[2148],ATG16L1->autophagy_related_16_like_1,chr2:234118697-234204320:+,INPP5D->chr2:233924677-234116549:+,inositol_polyphosphate-5-phosphatase_D	LCLC103H_LUNG	0.54	1	0.9235	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	CLK1--TRAK2	33	26	CLK1	3224	chr2:201725961:-	TRAK2	30368	chr2:202248939:-	ONLY_REF_SPLICE	YES	103	38	0.36	0.61	0.5165	0.407	CLK1->CDC_like_kinase_1,chr2:201717732-201729422:-,TRAK2->chr2:202241930-202316302:-,trafficking_protein,_kinesin_binding_2	LCLC103H_LUNG	0.36	0.61	0.9235	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	RP11-344E13.3--UBBP4	20	60	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	27	0	0.75	1	0.3131	0.9392	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	LCLC103H_LUNG	0.75	1	1.2523	TRUE	23	13	0	54	0	FALSE	ACH-000627
LCLC103H_LUNG	PRKRIP1--CUX1	31	14	PRKRIP1	4162	chr7:102016769:+	CUX1	62126	chr7:101916637:+	ONLY_REF_SPLICE	YES	43	102	0.51	0.31	0.4852	0.2191	LOCAL_REARRANGEMENT:+:[77070],PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	LCLC103H_LUNG	0.31	0.51	0.7043	TRUE	0	0	0	3	0	TRUE	ACH-000627
LCLC103H_LUNG	SEC24A--LINC01024	26	27	SEC24A	1385	chr5:133984863:+	LINC01024	37669	chr5:139452662:-	ONLY_REF_SPLICE	YES	84	0	0.39	1	0.407	0.4226	SEC24A->SEC24_homolog_A,_COPII_coat_complex_component,chr5:133984479-134063513:+,LINC01024->chr5:139452442-139488215:-,long_intergenic_non-protein_coding_RNA_1024	LCLC103H_LUNG	0.39	1	0.8296	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	JAK2--PTPRD	30	5	JAK2	3241	chr9:5022213:+	PTPRD	40608	chr9:9183363:-	ONLY_REF_SPLICE	YES	13	0	0.73	1	0.4696	0.0783	JAK2->ArcherDX_panel,FoundationOne_panel,Janus_kinase_2,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr9:4985033-5128183:+,PTPRD->Oncogene{Bushman},chr9:8314246-10612723:-,protein_tyrosine_phosphatase,_receptor_type_D	LCLC103H_LUNG	0.73	1	0.5479	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	SEC24A--LINC01024	19	27	SEC24A	1385	chr5:133984863:+	LINC01024	37673	chr5:139452658:-	INCL_NON_REF_SPLICE	YES	84	0	0.35	1	0.2974	0.4226	SEC24A->SEC24_homolog_A,_COPII_coat_complex_component,chr5:133984479-134063513:+,LINC01024->chr5:139452442-139488215:-,long_intergenic_non-protein_coding_RNA_1024	LCLC103H_LUNG	0.35	1	0.72	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	MT-ND6--MT-TE	23	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.36	0.0626	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LCLC103H_LUNG	1	1	0.4226	FALSE	499	1288	110	792	0	FALSE	ACH-000627
LCLC103H_LUNG	RAB31--MYOM1	20	10	RAB31	1280	chr18:9708441:+	MYOM1	23055	chr18:3219876:-	INCL_NON_REF_SPLICE	YES	272	0	0.1	1	0.3131	0.1565	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,MYOM1->chr18:3066805-3220106:-,myomesin_1	LCLC103H_LUNG	0.1	1	0.4696	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	C15orf57--CBX3	14	29	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	36	20	0.54	0.68	0.2191	0.4539	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LCLC103H_LUNG	0.54	0.68	0.673	TRUE	267	562	48	632	0	FALSE	ACH-000627
LCLC103H_LUNG	P4HA1--SACM1L	20	2	P4HA1	1209	chr10:74856524:-	SACM1L	36652	chr3:45772793:+	ONLY_REF_SPLICE	YES	5	12	0.81	0.65	0.3131	0.0313	P4HA1->chr10:74766975-74856732:-,prolyl_4-hydroxylase_subunit_alpha_1,SACM1L->SAC1_suppressor_of_actin_mutations_1-like_(yeast),chr3:45730548-45786916:+	LCLC103H_LUNG	0.65	0.81	0.3444	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	RP11-680G10.1--GSE1	19	4	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	8	1	0.74	0.2974	0.0626	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LCLC103H_LUNG	0.74	1	0.36	TRUE	458	1351	185	561	0	FALSE	ACH-000627
LCLC103H_LUNG	MT-ND4--MT-ATP8	17	0	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2661	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LCLC103H_LUNG	1	1	0.2661	FALSE	231	217	16	283	0	FALSE	ACH-000627
LCLC103H_LUNG	NPM1P24--SET	17	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2661	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LCLC103H_LUNG	1	1	0.2661	TRUE	0	0	0	434	0	FALSE	ACH-000627
LCLC103H_LUNG	C15orf57--CBX3	9	15	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	34	21	0.41	0.53	0.1409	0.2348	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	LCLC103H_LUNG	0.41	0.53	0.3757	TRUE	267	562	48	632	0	FALSE	ACH-000627
LCLC103H_LUNG	NR6A1--GOLGA1	8	17	NR6A1	2333	chr9:127495587:-	GOLGA1	33415	chr9:127674305:-	ONLY_REF_SPLICE	YES	2	69	0.93	0.27	0.1252	0.2661	NR6A1->chr9:127279554-127533589:-,nuclear_receptor_subfamily_6_group_A_member_1,GOLGA1->chr9:127640646-127710771:-,golgin_A1	LCLC103H_LUNG	0.27	0.93	0.3913	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	LINC00973--COPB2	10	6	LINC00973	2400	chr3:98701378:+	COPB2	24649	chr3:139080137:-	INCL_NON_REF_SPLICE	YES	233	212	0.06	0.07	0.1565	0.0939	LINC00973->chr3:98699902-98701940:+,long_intergenic_non-protein_coding_RNA_973,COPB2->chr3:139074442-139108574:-,coatomer_protein_complex_subunit_beta_2	LCLC103H_LUNG	0.06	0.07	0.2504	TRUE	0	0	0	1	0	FALSE	ACH-000627
LCLC103H_LUNG	MT-ND4--MT-ATP8	11	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1722	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LCLC103H_LUNG	1	1	0.1722	FALSE	230	193	14	283	0	FALSE	ACH-000627
LCLC103H_LUNG	MT-ND6--MT-TE	8	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1252	0.1722	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LCLC103H_LUNG	0.95	1	0.2974	FALSE	499	1288	110	792	0	FALSE	ACH-000627
LCLC103H_LUNG	MT-ATP6--MT-CO1	10	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1565	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LCLC103H_LUNG	1	1	0.1565	FALSE	183	104	9	328	0	FALSE	ACH-000627
LCLC103H_LUNG	MT-CO2--MT-CO1	9	4	MT-CO2	1231	chrM:7816:+	MT-CO1	5348	chrM:6567:+	INCL_NON_REF_SPLICE	YES	2	24024	0.87	0	0.1409	0.0626	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LCLC103H_LUNG	0	0.87	0.2035	FALSE	36	10	0	27	0	FALSE	ACH-000627
LCLC103H_LUNG	HSP90AB1--MT-RNR2	9	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	4511	0	0	1	0.1409	0.047	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LCLC103H_LUNG	0	1	0.1879	FALSE	13	9	0	364	0	FALSE	ACH-000627
LCLC103H_LUNG	MT-ND6--MT-TE	7	10	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1096	0.1565	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LCLC103H_LUNG	1	1	0.2661	FALSE	499	1288	110	792	0	FALSE	ACH-000627
LCLC103H_LUNG	MT-ND6--MT-TE	3	26	MT-ND6	1262	chrM:14412:-	MT-TE	4528	chrM:14740:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.047	0.407	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LCLC103H_LUNG	0.97	1	0.454	FALSE	499	1288	110	792	0	FALSE	ACH-000627
LCLC103H_LUNG	RP11-123O10.4--GRIP1	9	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1409	0.0157	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LCLC103H_LUNG	1	1	0.1566	FALSE	416	2512	207	587	0	FALSE	ACH-000627
LCLC103H_LUNG	AC104389.28--HBE1	9	0	AC104389.28	1302	chr11:5526581:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1409	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	LCLC103H_LUNG	1	1	0.1409	TRUE	0	16	0	53	13	FALSE	ACH-000627
LCLC103H_LUNG	NAA25--HECTD4	8	3	NAA25	24259	chr12:112478285:-	HECTD4	48828	chr12:112707653:-	ONLY_REF_SPLICE	YES	40	15	0.22	0.42	0.1252	0.047	LOCAL_REARRANGEMENT:-:[51166],NAA25->N(alpha)-acetyltransferase_25,_NatB_auxiliary_subunit,chr12:112464500-112546826:-,HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-	LCLC103H_LUNG	0.22	0.42	0.1722	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	IAH1--ASAP2	8	1	IAH1	11069	chr2:9628521:+	ASAP2	32415	chr2:9508554:+	ONLY_REF_SPLICE	YES	23	69	0.28	0.12	0.1252	0.0157	LOCAL_REARRANGEMENT:+:[67975],IAH1->chr2:9613787-9636672:+,isoamyl_acetate-hydrolyzing_esterase_1_homolog,ASAP2->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_2,chr2:9346894-9545812:+	LCLC103H_LUNG	0.12	0.28	0.1409	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	OSBPL2--CDH4	8	1	OSBPL2	3384	chr20:60835181:+	CDH4	40885	chr20:60511795:+	ONLY_REF_SPLICE	YES	45	0	0.17	1	0.1252	0.0157	OSBPL2->chr20:60813580-60871268:+,oxysterol_binding_protein_like_2,CDH4->cadherin_4,chr20:59827482-60515673:+	LCLC103H_LUNG	0.17	1	0.1409	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	MT-ND6--MT-TE	7	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1096	0.0626	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	LCLC103H_LUNG	1	1	0.1722	FALSE	499	1288	110	792	0	FALSE	ACH-000627
LCLC103H_LUNG	PRKRIP1--CUX1	4	16	PRKRIP1	5723	chr7:102036984:+	CUX1	62126	chr7:101916637:+	ONLY_REF_SPLICE	YES	59	102	0.25	0.16	0.0626	0.2504	LOCAL_REARRANGEMENT:+:[77070],PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	LCLC103H_LUNG	0.16	0.25	0.313	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	TRIQK--RP11-1084E5.1	7	3	TRIQK	11265	chr8:93929157:-	RP11-1084E5.1	26866	chr8:109907364:-	ONLY_REF_SPLICE	YES	27	0	0.27	1	0.1096	0.047	TRIQK->chr8:93895758-94029901:-,triple_QxxK/R_motif_containing,RP11-1084E5.1->chr8:109907258-110075646:-	LCLC103H_LUNG	0.27	1	0.1566	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	DNM1--TRIO	7	2	DNM1	1253	chr9:130965910:+	TRIO	30878	chr5:14286980:+	ONLY_REF_SPLICE	YES	30	416	0.23	0.02	0.1096	0.0313	{Klijn_CCL:Lung=1},DNM1->chr9:130965658-131017527:+,dynamin_1,TRIO->Oncogene{Bushman},chr5:14143811-14532235:+,trio_Rho_guanine_nucleotide_exchange_factor	LCLC103H_LUNG	0.02	0.23	0.1409	TRUE	0	0	0	1	0	FALSE	ACH-000627
LCLC103H_LUNG	MT-ATP6--MT-CO1	7	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1096	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LCLC103H_LUNG	1	1	0.1096	FALSE	183	104	9	328	0	FALSE	ACH-000627
LCLC103H_LUNG	MT-CO2--MT-CO1	6	4	MT-CO2	1249	chrM:7834:+	MT-CO1	5327	chrM:6546:+	INCL_NON_REF_SPLICE	YES	2	24490	0.83	0	0.0939	0.0626	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LCLC103H_LUNG	0	0.83	0.1565	FALSE	36	10	0	27	0	FALSE	ACH-000627
LCLC103H_LUNG	MT-ATP6--MT-CO1	6	1	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	3453	24762	0	0	0.0939	0.0157	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LCLC103H_LUNG	0	0	0.1096	FALSE	183	104	9	328	0	FALSE	ACH-000627
LCLC103H_LUNG	SERPINE1--MT-ND4	6	1	SERPINE1	4755	chr7:100775248:+	MT-ND4	14098	chrM:11227:+	INCL_NON_REF_SPLICE	YES	4750	15404	0	0	0.0939	0.0157	SERPINE1->chr7:100770370-100782547:+,serpin_family_E_member_1,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	LCLC103H_LUNG	0	0	0.1096	FALSE	1	0	0	29	0	FALSE	ACH-000627
LCLC103H_LUNG	CDH13--RP11-22H5.2	5	4	CDH13	2482	chr16:82671372:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	135	0	0.06	1	0.0783	0.0626	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	LCLC103H_LUNG	0.06	1	0.1409	FALSE	0	5	0	7	0	FALSE	ACH-000627
LCLC103H_LUNG	NPM1P24--SET	6	0	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0939	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	LCLC103H_LUNG	1	1	0.0939	TRUE	0	0	0	434	0	FALSE	ACH-000627
LCLC103H_LUNG	AC104389.28--HBE1	5	3	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	5	4	0.62	0.67	0.0783	0.047	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	LCLC103H_LUNG	0.62	0.67	0.1253	TRUE	0	48	0	65	48	FALSE	ACH-000627
LCLC103H_LUNG	HSP90AB1--MT-RNR2	5	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	4509	0	0	1	0.0783	0.047	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	LCLC103H_LUNG	0	1	0.1253	FALSE	13	9	0	364	0	FALSE	ACH-000627
LCLC103H_LUNG	CDH13--RP11-22H5.2	4	5	CDH13	3588	chr16:82673070:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	137	0	0.06	1	0.0626	0.0783	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	LCLC103H_LUNG	0.06	1	0.1409	FALSE	0	2	0	10	0	FALSE	ACH-000627
LCLC103H_LUNG	MT-CO2--MT-CO1	4	4	MT-CO2	1256	chrM:7841:+	MT-CO1	5313	chrM:6532:+	INCL_NON_REF_SPLICE	YES	2	22908	0.8	0	0.0626	0.0626	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LCLC103H_LUNG	0	0.8	0.1252	FALSE	36	10	0	27	0	FALSE	ACH-000627
LCLC103H_LUNG	SEC24A--NRG2	4	4	SEC24A	1385	chr5:133984863:+	NRG2	31258	chr5:139422721:-	INCL_NON_REF_SPLICE	YES	84	1	0.09	0.89	0.0626	0.0626	SEC24A->SEC24_homolog_A,_COPII_coat_complex_component,chr5:133984479-134063513:+,NRG2->chr5:139226364-139422884:-,neuregulin_2	LCLC103H_LUNG	0.09	0.89	0.1252	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	EPB41L1--RP5-1121H13.4	4	3	EPB41L1	2310	chr20:34680735:+	RP5-1121H13.4	40096	chr20:40619786:+	INCL_NON_REF_SPLICE	YES	13	0	0.35	1	0.0626	0.047	EPB41L1->chr20:34679426-34820721:+,erythrocyte_membrane_protein_band_4.1_like_1,RP5-1121H13.4->chr20:40619780-40692609:+	LCLC103H_LUNG	0.35	1	0.1096	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	RP11-680G10.1--GSE1	4	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	40	1	0.15	0.0626	0.047	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	LCLC103H_LUNG	0.15	1	0.1096	TRUE	465	1949	224	605	0	FALSE	ACH-000627
LCLC103H_LUNG	TSNARE1--MGLL	4	3	TSNARE1	8273	chr8:143412262:-	MGLL	30467	chr3:127500738:-	ONLY_REF_SPLICE	YES	23	150	0.23	0.04	0.0626	0.047	{Klijn_CCL:Lung=1},TSNARE1->chr8:143293441-143484601:-,t-SNARE_domain_containing_1,MGLL->chr3:127407909-127542051:-,monoglyceride_lipase	LCLC103H_LUNG	0.04	0.23	0.1096	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	LINC00511--SLC39A11	4	2	LINC00511	8867	chr17:70588342:-	SLC39A11	49102	chr17:70732858:-	ONLY_REF_SPLICE	YES	47	63	0.11	0.09	0.0626	0.0313	LOCAL_REARRANGEMENT:-:[5477],LINC00511->chr17:70319264-70636611:-,long_intergenic_non-protein_coding_RNA_511,SLC39A11->chr17:70642088-71088851:-,solute_carrier_family_39_member_11	LCLC103H_LUNG	0.09	0.11	0.0939	TRUE	0	5	0	7	4	TRUE	ACH-000627
LCLC103H_LUNG	NR6A1--GOLGA1	1	14	NR6A1	1291	chr9:127533299:-	GOLGA1	33415	chr9:127674305:-	ONLY_REF_SPLICE	YES	2	69	0.88	0.18	0.0157	0.2191	NR6A1->chr9:127279554-127533589:-,nuclear_receptor_subfamily_6_group_A_member_1,GOLGA1->chr9:127640646-127710771:-,golgin_A1	LCLC103H_LUNG	0.18	0.88	0.2348	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.67	1	0.0626	0.0313	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LCLC103H_LUNG	0.67	1	0.0939	FALSE	407	2205	196	549	0	FALSE	ACH-000627
LCLC103H_LUNG	RSPRY1--NLRC5	4	2	RSPRY1	6275	chr16:57243099:+	NLRC5	29090	chr16:57050986:+	ONLY_REF_SPLICE	YES	61	1	0.09	0.86	0.0626	0.0313	RSPRY1->chr16:57220049-57274387:+,ring_finger_and_SPRY_domain_containing_1,NLRC5->NLR_family,_CARD_domain_containing_5,chr16:57023397-57117443:+	LCLC103H_LUNG	0.09	0.86	0.0939	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	MT-CO2--MT-CO1	3	5	MT-CO2	1286	chrM:7871:+	MT-CO1	5166	chrM:6385:+	INCL_NON_REF_SPLICE	YES	3	22609	0.73	0	0.047	0.0783	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LCLC103H_LUNG	0	0.73	0.1253	FALSE	36	10	0	27	0	FALSE	ACH-000627
LCLC103H_LUNG	CDH13--RP11-22H5.2	3	4	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	57	0	0.11	1	0.047	0.0626	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	LCLC103H_LUNG	0.11	1	0.1096	FALSE	14	31	0	36	0	FALSE	ACH-000627
LCLC103H_LUNG	MT-ATP6--MT-CO1	4	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0626	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LCLC103H_LUNG	1	1	0.0626	FALSE	183	104	9	328	0	FALSE	ACH-000627
LCLC103H_LUNG	MT-CO2--MT-CO1	3	4	MT-CO2	1227	chrM:7812:+	MT-CO1	5226	chrM:6445:+	INCL_NON_REF_SPLICE	NO	2	22621	0.78	0	0.047	0.0626	HGNC_GENEFAM,LOCAL_REARRANGEMENT:+:[141],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LCLC103H_LUNG	0	0.78	0.1096	FALSE	36	10	0	27	0	FALSE	ACH-000627
LCLC103H_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0626	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LCLC103H_LUNG	1	1	0.0626	FALSE	230	198	14	283	0	FALSE	ACH-000627
LCLC103H_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0626	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LCLC103H_LUNG	1	1	0.0626	FALSE	230	193	14	283	0	FALSE	ACH-000627
LCLC103H_LUNG	SCARB1--UBC	4	0	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0626	0	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	LCLC103H_LUNG	1	1	0.0626	TRUE	55	66	6	101	0	FALSE	ACH-000627
LCLC103H_LUNG	KIAA1467--GPRC5A	3	3	KIAA1467	11392	chr12:13229077:+	GPRC5A	25990	chr12:13065018:+	ONLY_REF_SPLICE	YES	12	347	0.33	0.02	0.047	0.047	{Klijn_CCL:Lung=1},KIAA1467->chr12:13197218-13295455:+,GPRC5A->G_protein-coupled_receptor_class_C_group_5_member_A,chr12:13043716-13070871:+	LCLC103H_LUNG	0.02	0.33	0.094	TRUE	0	0	0	1	0	FALSE	ACH-000627
LCLC103H_LUNG	SCMH1--MYH11	3	3	SCMH1	2226	chr1:41651793:-	MYH11	27695	chr16:15932126:-	ONLY_REF_SPLICE	YES	26	0	0.19	1	0.047	0.047	SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila),MYH11->Oncogene{Bushman},chr16:15797029-15950890:-,myosin,_heavy_chain_11,_smooth_muscle	LCLC103H_LUNG	0.19	1	0.094	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	DSCR4--KCNJ6	3	2	DSCR4	2054	chr21:39492401:-	KCNJ6	16363	chr21:39213011:-	ONLY_REF_SPLICE	YES	5	0	0.5	1	0.047	0.0313	NEIGHBORS[34979],DSCR4->Down_syndrome_critical_region_4,chr21:39323728-39493454:-,KCNJ6->chr21:38979678-39288749:-,potassium_voltage-gated_channel_subfamily_J_member_6	LCLC103H_LUNG	0.5	1	0.0783	FALSE	0	24	0	27	0	FALSE	ACH-000627
LCLC103H_LUNG	RP11-307P5.1--SASH1	3	2	RP11-307P5.1	6659	chr6:148268655:+	SASH1	13973	chr6:148711270:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.047	0.0313	RP11-307P5.1->chr6:147981839-148275073:+,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	LCLC103H_LUNG	0.83	1	0.0783	TRUE	0	2	0	37	2	FALSE	ACH-000627
LCLC103H_LUNG	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.71	1	0.047	0.0313	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LCLC103H_LUNG	0.71	1	0.0783	FALSE	467	2173	244	435	0	FALSE	ACH-000627
LCLC103H_LUNG	RP11-96H19.1--RP11-446N19.1	3	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.62	1	0.047	0.0313	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LCLC103H_LUNG	0.62	1	0.0783	FALSE	515	4851	409	746	0	FALSE	ACH-000627
LCLC103H_LUNG	CTD-2008L17.1--RP11-456O19.2	3	1	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.047	0.0157	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	LCLC103H_LUNG	0.8	1	0.0627	FALSE	33	240	4	98	0	FALSE	ACH-000627
LCLC103H_LUNG	HEG1--ZNF148	3	1	HEG1	11897	chr3:124728549:-	ZNF148	43234	chr3:124953173:-	ONLY_REF_SPLICE	YES	187	34	0.02	0.11	0.047	0.0157	HEG1->chr3:124684554-124774802:-,heart_development_protein_with_EGF_like_domains_1,ZNF148->chr3:124944405-125094198:-,zinc_finger_protein_148	LCLC103H_LUNG	0.02	0.11	0.0627	TRUE	0	0	0	1	0	FALSE	ACH-000627
LCLC103H_LUNG	MT-ATP6--MT-CO1	3	1	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	6158	22578	0	0	0.047	0.0157	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LCLC103H_LUNG	0	0	0.0627	FALSE	183	104	9	328	0	FALSE	ACH-000627
LCLC103H_LUNG	RP11-634B7.4--TRIM58	3	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	1	0	0.8	1	0.047	0.0157	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	LCLC103H_LUNG	0.8	1	0.0627	TRUE	158	633	76	73	0	FALSE	ACH-000627
LCLC103H_LUNG	SART1--RP11-867G23.1	3	1	SART1	7928	chr11:65744572:+	RP11-867G23.1	14102	chr11:66032691:-	ONLY_REF_SPLICE	NO	197	0	0.02	1	0.047	0.0157	SART1->chr11:65729160-65747299:+,squamous_cell_carcinoma_antigen_recognized_by_T-cells_1,RP11-867G23.1->chr11:66032248-66033137:-	LCLC103H_LUNG	0.02	1	0.0627	TRUE	0	0	0	1	0	FALSE	ACH-000627
LCLC103H_LUNG	BIK--CELSR1	3	0	BIK	1056	chr22:43506809:+	CELSR1	18778	chr22:46832186:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.047	0	BIK->BCL2_interacting_killer,chr22:43506754-43525718:+,CELSR1->cadherin_EGF_LAG_seven-pass_G-type_receptor_1,chr22:46756731-46933067:-	LCLC103H_LUNG	1	1	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1141	chrM:8667:+	MT-CO1	4697	chrM:5919:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.047	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LCLC103H_LUNG	1	1	0.047	FALSE	182	97	9	327	0	FALSE	ACH-000627
LCLC103H_LUNG	MT-ATP6--MT-CO1	3	0	MT-ATP6	1555	chrM:9081:+	MT-CO1	5956	chrM:7178:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.047	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LCLC103H_LUNG	1	1	0.047	FALSE	183	104	9	328	0	FALSE	ACH-000627
LCLC103H_LUNG	ELFN2--NF2	1	7	ELFN2	1173	chr22:37823333:-	NF2	36217	chr22:30090741:+	ONLY_REF_SPLICE	YES	11	5	0.42	0.62	0.0157	0.1096	ELFN2->chr22:37764000-37823505:-,extracellular_leucine-rich_repeat_and_fibronectin_type_III_domain_containing_2,NF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr22:29999545-30094587:+,neurofibromin_2_(merlin)	LCLC103H_LUNG	0.42	0.62	0.1253	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	RAB31--MYOM1	1	6	RAB31	1280	chr18:9708441:+	MYOM1	24131	chr18:3215249:-	ONLY_REF_SPLICE	YES	272	1	0.03	0.88	0.0157	0.0939	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,MYOM1->chr18:3066805-3220106:-,myomesin_1	LCLC103H_LUNG	0.03	0.88	0.1096	TRUE	0	0	0	1	0	FALSE	ACH-000627
LCLC103H_LUNG	E2F3--RP11-239H6.2	2	1	E2F3	2489	chr6:20404063:+	RP11-239H6.2	17966	chr6:20317782:+	ONLY_REF_SPLICE	YES	12	0	0.2	1	0.0313	0.0157	LOCAL_REARRANGEMENT:+:[84428],E2F3->E2F_transcription_factor_3,Oncogene{Bushman},chr6:20402398-20493941:+,RP11-239H6.2->chr6:20212318-20317970:+	LCLC103H_LUNG	0.2	1	0.047	TRUE	0	1	0	1	1	TRUE	ACH-000627
LCLC103H_LUNG	RAB31--MYOM1	2	1	RAB31	1280	chr18:9708441:+	MYOM1	25449	chr18:3193956:-	ONLY_REF_SPLICE	YES	272	18	0.01	0.14	0.0313	0.0157	RAB31->RAB31,_member_RAS_oncogene_family,chr18:9708162-9862548:+,MYOM1->chr18:3066805-3220106:-,myomesin_1	LCLC103H_LUNG	0.01	0.14	0.047	FALSE	0	0	0	1	0	FALSE	ACH-000627
LCLC103H_LUNG	SCMH1--MYH11	2	1	SCMH1	1096	chr1:41707731:-	MYH11	27695	chr16:15932126:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0313	0.0157	SCMH1->chr1:41492872-41707826:-,sex_comb_on_midleg_homolog_1_(Drosophila),MYH11->Oncogene{Bushman},chr16:15797029-15950890:-,myosin,_heavy_chain_11,_smooth_muscle	LCLC103H_LUNG	0.5	1	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	UTS2--RP11-431K24.4	2	1	UTS2	1612	chr1:7912961:-	RP11-431K24.4	11960	chr1:8278593:-	ONLY_REF_SPLICE	YES	3	0	0.5	1	0.0313	0.0157	UTS2->chr1:7903143-7913572:-,urotensin_2,RP11-431K24.4->chr1:8278250-8280589:-	LCLC103H_LUNG	0.5	1	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	AC104389.28--HBE1	2	0	AC104389.28	1302	chr11:5526581:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	LCLC103H_LUNG	1	1	0.0313	TRUE	0	11	0	26	8	FALSE	ACH-000627
LCLC103H_LUNG	BIK--CECR2	2	0	BIK	1056	chr22:43506809:+	CECR2	11081	chr22:17956630:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	BIK->BCL2_interacting_killer,chr22:43506754-43525718:+,CECR2->cat_eye_syndrome_chromosome_region,_candidate_2,chr22:17840837-18037850:+	LCLC103H_LUNG	1	1	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	LCLC103H_LUNG	1	1	0.0313	FALSE	16	356	14	466	0	FALSE	ACH-000627
LCLC103H_LUNG	RP11-476K15.1--CTD-2015H3.2	2	0	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	LCLC103H_LUNG	1	1	0.0313	FALSE	0	46	0	73	0	FALSE	ACH-000627
LCLC103H_LUNG	STS--RP11-692P14.1	2	0	STS	9700	chrX:7252148:+	RP11-692P14.1	19696	chrX:7986097:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0313	0	STS->chrX:7137497-7272851:+,steroid_sulfatase_(microsomal),_isozyme_S,RP11-692P14.1->chrX:7975419-7986201:+	LCLC103H_LUNG	1	1	0.0313	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	AC104389.28--HBE1	1	3	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	5	0	0.44	1	0.0157	0.047	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	LCLC103H_LUNG	0.44	1	0.0627	TRUE	0	35	0	55	35	FALSE	ACH-000627
LCLC103H_LUNG	ASAP1--KB-1568E2.1	1	2	ASAP1	7774	chr8:131370263:-	KB-1568E2.1	48803	chr8:131611317:-	ONLY_REF_SPLICE	YES	68	1	0.04	0.75	0.0157	0.0313	ASAP1->ArfGAP_with_SH3_domain,_ankyrin_repeat_and_PH_domain_1,chr8:131064353-131455906:-,KB-1568E2.1->chr8:131607545-131667958:-	LCLC103H_LUNG	0.04	0.75	0.047	TRUE	0	0	0	1	0	TRUE	ACH-000627
LCLC103H_LUNG	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.0157	0.0313	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LCLC103H_LUNG	0.6	1	0.047	FALSE	192	492	57	212	0	FALSE	ACH-000627
LCLC103H_LUNG	AC104389.28--HBE1	1	1	AC104389.28	2337	chr11:5368106:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	NO	4	4	0.33	0.33	0.0157	0.0157	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	LCLC103H_LUNG	0.33	0.33	0.0314	TRUE	0	0	0	9	0	TRUE	ACH-000627
LCLC103H_LUNG	CD44--SERGEF	1	1	CD44	6502	chr11:35211612:+	SERGEF	43810	chr11:17981183:-	ONLY_REF_SPLICE	YES	474	63	0	0.03	0.0157	0.0157	CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,SERGEF->chr11:17809595-18034709:-,secretion_regulating_guanine_nucleotide_exchange_factor	LCLC103H_LUNG	0	0.03	0.0314	FALSE	0	0	0	1	0	FALSE	ACH-000627
LCLC103H_LUNG	FOXK2--HEXDC	1	1	FOXK2	10797	chr17:80544076:+	HEXDC	32182	chr17:80391534:+	ONLY_REF_SPLICE	YES	99	7	0.02	0.22	0.0157	0.0157	LOCAL_REARRANGEMENT:+:[77068],FOXK2->chr17:80477589-80602538:+,forkhead_box_K2,HEXDC->chr17:80376194-80400521:+,hexosaminidase_D	LCLC103H_LUNG	0.02	0.22	0.0314	TRUE	0	0	0	1	0	FALSE	ACH-000627
LCLC103H_LUNG	MBP--ZNF236	1	1	MBP	10678	chr18:74778254:-	ZNF236	47885	chr18:74606969:+	ONLY_REF_SPLICE	YES	87	15	0.02	0.12	0.0157	0.0157	GTEx_v2:{count=1;pct=0.01%;dist=Thyroid=1},LOCAL_INVERSION:-:+:[8100],MBP->chr18:74690783-74845639:-,myelin_basic_protein,ZNF236->chr18:74534563-74682683:+,zinc_finger_protein_236	LCLC103H_LUNG	0.02	0.12	0.0314	TRUE	0	0	0	1	0	FALSE	ACH-000627
LCLC103H_LUNG	ZFAND6--MTHFS	1	1	ZFAND6	1242	chr15:80352151:+	MTHFS	23938	chr15:80137784:-	ONLY_REF_SPLICE	YES	209	61	0.01	0.03	0.0157	0.0157	GTEx_FI:{Blood=[count:2=pct:1.1]},ZFAND6->chr15:80351910-80430735:+,zinc_finger_AN1-type_containing_6,MTHFS->5,10-methenyltetrahydrofolate_synthetase_(5-formyltetrahydrofolate_cyclo-ligase),chr15:80125927-80189721:-	LCLC103H_LUNG	0.01	0.03	0.0314	FALSE	1	2	0	3	0	FALSE	ACH-000627
SNU1033_LARGE_INTESTINE	EHF--TSG101	986	245	EHF	10074	chr11:34673352:+	TSG101	33738	chr11:18490765:-	ONLY_REF_SPLICE	YES	84	2	0.94	1	9.5827	2.3811	EHF->ETS_homologous_factor,chr11:34642640-34682604:+,TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101	SNU1033_LARGE_INTESTINE	0.94	1	11.9638	TRUE	0	0	0	2	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TN	174	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.6911	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1033_LARGE_INTESTINE	1	1	1.6911	FALSE	369	2501	205	193	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	AP1G1--ZNF821	145	33	AP1G1	1439	chr16:71842666:-	ZNF821	44012	chr16:71901940:-	ONLY_REF_SPLICE	YES	43	5	0.81	0.97	1.4092	0.3207	LOCAL_REARRANGEMENT:-:[50479],AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-,ZNF821->chr16:71893583-71929239:-,zinc_finger_protein_821	SNU1033_LARGE_INTESTINE	0.81	0.97	1.7299	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TC	115	13	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.1177	0.1263	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1033_LARGE_INTESTINE	1	1	1.244	FALSE	462	80	0	856	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	TIMM23B--LINC00843	96	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.933	0.2818	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SNU1033_LARGE_INTESTINE	0.99	1	1.2148	TRUE	508	994	45	981	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	IGF2BP2--TRA2B	86	44	IGF2BP2	2393	chr3:185540941:-	TRA2B	33930	chr3:185644522:-	ONLY_REF_SPLICE	YES	173	381	0.43	0.25	0.8358	0.4276	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	SNU1033_LARGE_INTESTINE	0.25	0.43	1.2634	TRUE	0	1	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	CCDC97--HNRNPUL1	82	37	CCDC97	3283	chr19:41822744:+	HNRNPUL1	15433	chr19:41774128:+	ONLY_REF_SPLICE	YES	30	224	0.8	0.35	0.7969	0.3596	LOCAL_REARRANGEMENT:+:[2591],CCDC97->chr19:41816094-41830788:+,coiled-coil_domain_containing_97,HNRNPUL1->chr19:41768401-41813503:+,heterogeneous_nuclear_ribonucleoprotein_U_like_1	SNU1033_LARGE_INTESTINE	0.35	0.8	1.1565	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	BRD1--MAPK12	78	46	BRD1	13523	chr22:50181038:-	MAPK12	24052	chr22:50696730:-	ONLY_REF_SPLICE	YES	42	35	0.75	0.78	0.7581	0.4471	BRD1->bromodomain_containing_1,chr22:50166931-50221160:-,MAPK12->Oncogene{Bushman},chr22:50683879-50700254:-,mitogen-activated_protein_kinase_12	SNU1033_LARGE_INTESTINE	0.75	0.78	1.2052	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	7	243	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	37	0	0.87	1	0.068	2.3617	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.87	1	2.4297	FALSE	344	827	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	241	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	23	1	0.91	1	0.0583	2.3422	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.91	1	2.4005	FALSE	344	826	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	EHF--TSG101	4	245	EHF	10074	chr11:34673352:+	TSG101	32276	chr11:18497227:-	INCL_NON_REF_SPLICE	YES	84	5	0.75	0.98	0.0389	2.3811	EHF->ETS_homologous_factor,chr11:34642640-34682604:+,TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101	SNU1033_LARGE_INTESTINE	0.75	0.98	2.42	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	249	MT-ND4	1724	chrM:11483:+	MT-ND4L	5482	chrM:10573:+	INCL_NON_REF_SPLICE	YES	5600	0	0.04	1	0.0292	2.42	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.04	1	2.4492	FALSE	344	827	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	248	MT-ND4	1528	chrM:11287:+	MT-ND4L	5437	chrM:10528:+	INCL_NON_REF_SPLICE	YES	1069	0	0.19	1	0.0292	2.4103	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.19	1	2.4395	FALSE	344	827	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	EHF--TSG101	3	245	EHF	10101	chr11:34673379:+	TSG101	33738	chr11:18490765:-	INCL_NON_REF_SPLICE	YES	93	2	0.73	0.99	0.0292	2.3811	EHF->ETS_homologous_factor,chr11:34642640-34682604:+,TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101	SNU1033_LARGE_INTESTINE	0.73	0.99	2.4103	TRUE	0	0	0	2	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	243	MT-ND4	1197	chrM:10956:+	MT-ND4L	5432	chrM:10523:+	INCL_NON_REF_SPLICE	YES	32	0	0.88	1	0.0292	2.3617	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.88	1	2.3909	FALSE	344	826	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	243	MT-ND4	1217	chrM:10976:+	MT-ND4L	5380	chrM:10471:+	INCL_NON_REF_SPLICE	YES	36	0	0.87	1	0.0292	2.3617	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.87	1	2.3909	FALSE	344	827	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	236	MT-ND4	1144	chrM:10903:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	21	1	0.92	1	0.0292	2.2936	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.92	1	2.3228	FALSE	344	826	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TN	31	120	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3013	1.1663	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1033_LARGE_INTESTINE	1	1	1.4676	FALSE	369	2501	205	193	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	TIMM23--RP11-464F9.1	57	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	233	3	0.21	0.95	0.554	0.0389	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SNU1033_LARGE_INTESTINE	0.21	0.95	0.5929	TRUE	519	3926	326	965	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	204	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	YES	15	1	0.93	1	0.0389	1.9826	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.93	1	2.0215	FALSE	344	826	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	8	178	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	13	1	0.93	0.99	0.0778	1.7299	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.93	0.99	1.8077	FALSE	344	821	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND6--MT-TE	48	9	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4665	0.0875	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1033_LARGE_INTESTINE	1	1	0.554	FALSE	499	1288	110	792	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	CCDC57--CSNK1D	43	22	CCDC57	16219	chr17:80129577:-	CSNK1D	47164	chr17:80213453:-	ONLY_REF_SPLICE	YES	6	110	0.92	0.37	0.4179	0.2138	GTEx_v2:{count=1;pct=0.01%;dist=Testis=1},LOCAL_REARRANGEMENT:-:[26193],CCDC57->chr17:80059336-80170706:-,coiled-coil_domain_containing_57,CSNK1D->casein_kinase_1_delta,chr17:80196899-80231607:-	SNU1033_LARGE_INTESTINE	0.37	0.92	0.6317	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	EHF--TSG101	9	149	EHF	9879	chr11:34673157:+	TSG101	33738	chr11:18490765:-	ONLY_REF_SPLICE	YES	103	2	0.61	0.99	0.0875	1.4481	EHF->ETS_homologous_factor,chr11:34642640-34682604:+,TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101	SNU1033_LARGE_INTESTINE	0.61	0.99	1.5356	TRUE	0	0	0	2	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	161	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	75	0	0.69	1	0.0292	1.5647	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.69	1	1.5939	FALSE	344	827	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	159	MT-ND4	1131	chrM:10890:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	20	0	0.89	1	0.0292	1.5453	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.89	1	1.5745	FALSE	344	826	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	28	58	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	17293	0	0	1	0.2721	0.5637	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0	1	0.8358	FALSE	328	800	43	304	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	EHF--TSG101	4	149	EHF	9875	chr11:34673153:+	TSG101	33738	chr11:18490765:-	INCL_NON_REF_SPLICE	YES	100	2	0.6	0.99	0.0389	1.4481	EHF->ETS_homologous_factor,chr11:34642640-34682604:+,TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101	SNU1033_LARGE_INTESTINE	0.6	0.99	1.487	TRUE	0	0	0	2	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TN	19	79	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1847	0.7678	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1033_LARGE_INTESTINE	1	1	0.9525	FALSE	369	2501	205	193	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TN	29	32	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2818	0.311	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1033_LARGE_INTESTINE	1	1	0.5928	FALSE	369	2501	205	193	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND6--MT-TE	29	22	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.2818	0.2138	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1033_LARGE_INTESTINE	0.94	1	0.4956	FALSE	499	1288	110	792	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	AP1G1--ZNF821	30	17	AP1G1	1439	chr16:71842666:-	ZNF821	45157	chr16:71898951:-	ONLY_REF_SPLICE	YES	43	20	0.52	0.7	0.2916	0.1652	LOCAL_REARRANGEMENT:-:[50479],AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-,ZNF821->chr16:71893583-71929239:-,zinc_finger_protein_821	SNU1033_LARGE_INTESTINE	0.52	0.7	0.4568	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TN	34	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3304	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1033_LARGE_INTESTINE	1	1	0.3304	FALSE	369	2501	205	193	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TN	17	63	MT-TA	1054	chrM:5602:-	MT-TN	4092	chrM:5707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1652	0.6123	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1033_LARGE_INTESTINE	1	1	0.7775	FALSE	369	2501	205	193	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO3--MT-ATP6	17	51	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	7	18	0.91	0.79	0.1652	0.4957	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1033_LARGE_INTESTINE	0.79	0.91	0.6609	FALSE	189	492	56	216	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND6--MT-TE	27	9	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2624	0.0875	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1033_LARGE_INTESTINE	1	1	0.3499	FALSE	499	1288	110	792	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	20	35	MT-ND4	1447	chrM:11206:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	398	0	0.12	1	0.1944	0.3402	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.12	1	0.5346	FALSE	344	827	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	ACP6--RPRD2	26	9	ACP6	5538	chr1:147126309:-	RPRD2	35154	chr1:150443037:+	ONLY_REF_SPLICE	YES	83	46	0.3	0.43	0.2527	0.0875	ACP6->acid_phosphatase_6,_lysophosphatidic,chr1:147101453-147142618:-,RPRD2->chr1:150335567-150449042:+,regulation_of_nuclear_pre-mRNA_domain_containing_2	SNU1033_LARGE_INTESTINE	0.3	0.43	0.3402	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	IGF2BP2--TRA2B	16	48	IGF2BP2	3513	chr3:185538800:-	TRA2B	33930	chr3:185644522:-	ONLY_REF_SPLICE	YES	195	381	0.25	0.14	0.1555	0.4665	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	SNU1033_LARGE_INTESTINE	0.14	0.25	0.622	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	19	35	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	36	0	0.6	1	0.1847	0.3402	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.6	1	0.5249	FALSE	344	826	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	RUSC2--ATP8B5P	27	2	RUSC2	1046	chr9:35490169:+	ATP8B5P	30246	chr9:35471017:+	ONLY_REF_SPLICE	YES	3	0	0.91	1	0.2624	0.0194	LOCAL_REARRANGEMENT:+:[7098],RUSC2->RUN_and_SH3_domain_containing_2,chr9:35490124-35561895:+,ATP8B5P->ATPase_phospholipid_transporting_8B5,_pseudogene,chr9:35406752-35483026:+	SNU1033_LARGE_INTESTINE	0.91	1	0.2818	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	85	MT-CO3	1468	chrM:9674:+	MT-ATP6	4778	chrM:8520:+	INCL_NON_REF_SPLICE	YES	9	0	0.91	1	0.0292	0.8261	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1033_LARGE_INTESTINE	0.91	1	0.8553	FALSE	189	492	56	216	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	15	36	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	556	0	0.08	1	0.1458	0.3499	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.08	1	0.4957	FALSE	344	827	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TC	19	13	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1847	0.1263	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1033_LARGE_INTESTINE	1	1	0.311	FALSE	462	80	0	856	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	71	MT-CO3	1232	chrM:9438:+	MT-ATP6	4744	chrM:8486:+	INCL_NON_REF_SPLICE	YES	12	0	0.86	1	0.0389	0.69	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1033_LARGE_INTESTINE	0.86	1	0.7289	FALSE	189	492	56	216	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	8	55	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	27	0	0.7	1	0.0778	0.5345	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.7	1	0.6123	FALSE	344	826	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	72	MT-CO3	1459	chrM:9665:+	MT-ATP6	4899	chrM:8641:+	INCL_NON_REF_SPLICE	YES	9	2	0.89	0.97	0.0292	0.6998	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1033_LARGE_INTESTINE	0.89	0.97	0.729	FALSE	189	492	56	216	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	11	36	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1104	0	0.04	1	0.1069	0.3499	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.04	1	0.4568	FALSE	344	827	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TN	8	48	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0778	0.4665	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1033_LARGE_INTESTINE	1	1	0.5443	FALSE	369	2501	205	193	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND6--MT-TE	13	27	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1263	0.2624	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1033_LARGE_INTESTINE	1	1	0.3887	FALSE	499	1288	110	792	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	FAM157A--LMLN	19	2	FAM157A	4742	chr3:197884540:+	LMLN	32582	chr3:197746124:+	ONLY_REF_SPLICE	YES	16	8	0.57	0.72	0.1847	0.0194	FAM157A->chr3:197879237-197925886:+,family_with_sequence_similarity_157_member_A,LMLN->chr3:197687071-197770591:+,leishmanolysin_like_peptidase	SNU1033_LARGE_INTESTINE	0.57	0.72	0.2041	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	66	MT-CO3	1220	chrM:9426:+	MT-ATP6	4739	chrM:8481:+	INCL_NON_REF_SPLICE	NO	13	0	0.84	1	0.0292	0.6414	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1033_LARGE_INTESTINE	0.84	1	0.6706	FALSE	189	492	56	216	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TN	8	44	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0778	0.4276	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1033_LARGE_INTESTINE	1	1	0.5054	FALSE	369	2501	205	193	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO3--MT-ATP6	7	47	MT-CO3	1113	chrM:9319:+	MT-ATP6	4883	chrM:8625:+	INCL_NON_REF_SPLICE	YES	2	0	0.96	1	0.068	0.4568	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1033_LARGE_INTESTINE	0.96	1	0.5248	FALSE	189	492	56	216	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TN	4	57	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0.554	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1033_LARGE_INTESTINE	1	1	0.5929	FALSE	369	2501	205	193	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ATP6--MT-CO1	17	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	9560	31199	0	0	0.1652	0.0194	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1033_LARGE_INTESTINE	0	0	0.1846	FALSE	183	104	9	328	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	54	MT-CO3	1207	chrM:9413:+	MT-ATP6	5182	chrM:8924:+	INCL_NON_REF_SPLICE	NO	18	57	0.76	0.5	0.0292	0.5248	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1033_LARGE_INTESTINE	0.5	0.76	0.554	FALSE	189	492	56	216	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND6--MT-TE	7	37	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.068	0.3596	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1033_LARGE_INTESTINE	0.94	1	0.4276	FALSE	499	1288	110	792	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO3--MT-ATP6	4	46	MT-CO3	1090	chrM:9296:+	MT-ATP6	5088	chrM:8830:+	INCL_NON_REF_SPLICE	YES	1	31	0.98	0.62	0.0389	0.4471	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1033_LARGE_INTESTINE	0.62	0.98	0.486	FALSE	189	492	56	216	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	SLC1A5--MT-ND4L	15	1	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1240	0	0.01	1	0.1458	0.0097	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.01	1	0.1555	FALSE	0	0	0	189	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	15	0	MT-ND4	1033	chrM:10792:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1458	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	1	1	0.1458	FALSE	344	821	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	6	35	MT-ND4	1248	chrM:11007:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	45	0	0.48	1	0.0583	0.3402	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.48	1	0.3985	FALSE	344	827	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ATP6--MT-CO1	14	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	11466	31700	0	0	0.1361	0.0194	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1033_LARGE_INTESTINE	0	0	0.1555	FALSE	183	104	9	328	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TC	14	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1361	0.0194	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1033_LARGE_INTESTINE	1	1	0.1555	FALSE	462	80	0	856	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	45	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	16	0	0.75	1	0.0292	0.4373	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.75	1	0.4665	FALSE	344	826	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	GPATCH1--RHPN2	12	8	GPATCH1	2522	chr19:33579174:+	RHPN2	28546	chr19:33517538:-	ONLY_REF_SPLICE	YES	22	133	0.48	0.13	0.1166	0.0778	LOCAL_INVERSION:+:-:[15992],GPATCH1->G-patch_domain_containing_1,chr19:33571786-33621448:+,RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2	SNU1033_LARGE_INTESTINE	0.13	0.48	0.1944	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	35	MT-ND4	1164	chrM:10923:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	25	0	0.61	1	0.0389	0.3402	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.61	1	0.3791	FALSE	344	826	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	RP5-857K21.11--MTATP6P1	12	0	RP5-857K21.11	1028	chr1:569783:+	MTATP6P1	5197	chr1:569725:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1166	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SNU1033_LARGE_INTESTINE	1	1	0.1166	TRUE	16	42	4	10	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	35	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	YES	1	7	0.97	0.84	0.0292	0.3402	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1033_LARGE_INTESTINE	0.84	0.97	0.3694	FALSE	189	492	56	216	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ATP6--MT-CO1	11	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9493	31740	0	0	0.1069	0.0194	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1033_LARGE_INTESTINE	0	0	0.1263	FALSE	183	104	9	328	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	RP11-114H23.1--RP11-114H23.2	10	5	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0972	0.0486	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	SNU1033_LARGE_INTESTINE	1	1	0.1458	FALSE	81	155	12	160	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TC	7	16	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.068	0.1555	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1033_LARGE_INTESTINE	1	1	0.2235	FALSE	462	80	0	856	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	IGF2BP2--TRA2B	4	27	IGF2BP2	1274	chr3:185542571:-	TRA2B	33930	chr3:185644522:-	ONLY_REF_SPLICE	YES	179	381	0.15	0.08	0.0389	0.2624	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	SNU1033_LARGE_INTESTINE	0.08	0.15	0.3013	TRUE	0	0	0	2	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND6--MT-TE	3	29	MT-ND6	1057	chrM:14617:-	MT-TE	4530	chrM:14738:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0.2818	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1033_LARGE_INTESTINE	1	1	0.311	FALSE	499	1288	110	792	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND6--MT-TE	10	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0972	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1033_LARGE_INTESTINE	1	1	0.0972	FALSE	499	1288	110	792	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	SLC1A5--MT-ND4L	9	4	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	1239	0	0.01	1	0.0875	0.0389	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.01	1	0.1264	FALSE	0	0	0	189	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	IGF2BP2--TRA2B	6	14	IGF2BP2	2393	chr3:185540941:-	TRA2B	35038	chr3:185643414:-	ONLY_REF_SPLICE	YES	173	411	0.1	0.05	0.0583	0.1361	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	SNU1033_LARGE_INTESTINE	0.05	0.1	0.1944	TRUE	0	0	0	1	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND6--MT-TE	4	22	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0389	0.2138	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1033_LARGE_INTESTINE	0.9	1	0.2527	FALSE	499	1288	110	792	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TC	6	14	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0.1361	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SNU1033_LARGE_INTESTINE	1	1	0.1944	FALSE	462	80	0	856	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	NRIP1--AF127936.7	9	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0875	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1033_LARGE_INTESTINE	1	1	0.0875	FALSE	292	1546	117	613	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO3--MT-ATP6	5	15	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	6	4	0.77	0.83	0.0486	0.1458	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1033_LARGE_INTESTINE	0.77	0.83	0.1944	FALSE	189	492	56	216	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	FAM208B--AKR1C7P	8	2	FAM208B	1338	chr10:5727138:+	AKR1C7P	35755	chr10:5327975:-	ONLY_REF_SPLICE	YES	7	0	0.59	1	0.0778	0.0194	FAM208B->chr10:5726801-5805703:+,family_with_sequence_similarity_208_member_B,AKR1C7P->aldo-keto_reductase_family_1,_member_C7,_pseudogene,chr10:5317136-5330433:-	SNU1033_LARGE_INTESTINE	0.59	1	0.0972	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	TRAPPC9--PTK2	7	6	TRAPPC9	5810	chr8:141445211:-	PTK2	114084	chr8:141711121:-	ONLY_REF_SPLICE	YES	17	100	0.43	0.12	0.068	0.0583	TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	SNU1033_LARGE_INTESTINE	0.12	0.43	0.1263	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO2--MT-ND2	8	1	MT-CO2	1240	chrM:7825:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	21668	608	0	0.01	0.0778	0.0097	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU1033_LARGE_INTESTINE	0	0.01	0.0875	FALSE	105	46	5	21	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	16	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	59	0	0.25	1	0.0389	0.1555	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.25	1	0.1944	FALSE	344	827	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	TRAPPC9--PTK2	6	7	TRAPPC9	6837	chr8:141436714:-	PTK2	114084	chr8:141711121:-	ONLY_REF_SPLICE	YES	19	100	0.41	0.12	0.0583	0.068	TRAPPC9->chr8:140742586-141468678:-,trafficking_protein_particle_complex_9,PTK2->chr8:141667999-142012315:-,protein_tyrosine_kinase_2	SNU1033_LARGE_INTESTINE	0.12	0.41	0.1263	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	C15orf57--CBX3	7	2	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	36	33	0.2	0.21	0.068	0.0194	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SNU1033_LARGE_INTESTINE	0.2	0.21	0.0874	TRUE	267	562	48	632	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	AP1G1--ZNF821	6	5	AP1G1	1439	chr16:71842666:-	ZNF821	45963	chr16:71898145:-	ONLY_REF_SPLICE	YES	43	33	0.2	0.25	0.0583	0.0486	LOCAL_REARRANGEMENT:-:[50479],AP1G1->adaptor_related_protein_complex_1_gamma_1_subunit,chr16:71762913-71843104:-,ZNF821->chr16:71893583-71929239:-,zinc_finger_protein_821	SNU1033_LARGE_INTESTINE	0.2	0.25	0.1069	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	APP--MT-ND2	7	1	APP	11644	chr21:27394205:-	MT-ND2	33022	chrM:5316:+	INCL_NON_REF_SPLICE	YES	1073	905	0.01	0.01	0.068	0.0097	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU1033_LARGE_INTESTINE	0.01	0.01	0.0777	FALSE	0	1	0	51	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	16	MT-ND4	1294	chrM:11053:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	61	0	0.24	1	0.0292	0.1555	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.24	1	0.1847	FALSE	344	827	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TN	7	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.068	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1033_LARGE_INTESTINE	1	1	0.068	FALSE	369	2501	205	193	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MAP3K4--RP3-428L16.1	6	3	MAP3K4	25008	chr6:161523811:+	RP3-428L16.1	40391	chr6:161390750:+	ONLY_REF_SPLICE	YES	20	0	0.31	1	0.0583	0.0292	LOCAL_REARRANGEMENT:+:[21956],MAP3K4->chr6:161412759-161538417:+,mitogen-activated_protein_kinase_kinase_kinase_4,RP3-428L16.1->chr6:161352112-161390803:+	SNU1033_LARGE_INTESTINE	0.31	1	0.0875	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	6	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0583	0.0292	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1033_LARGE_INTESTINE	0.82	1	0.0875	FALSE	515	4851	409	746	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	10	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4136	32104	0	0	0.0389	0.0972	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1033_LARGE_INTESTINE	0	0	0.1361	FALSE	183	104	9	328	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO3--MT-ATP6	6	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	8	1	0.47	0.88	0.0583	0.0097	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1033_LARGE_INTESTINE	0.47	0.88	0.068	FALSE	189	492	56	216	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	BRD1--MAPK12	4	8	BRD1	12025	chr22:50187682:-	MAPK12	24052	chr22:50696730:-	ONLY_REF_SPLICE	YES	53	35	0.18	0.26	0.0389	0.0778	BRD1->bromodomain_containing_1,chr22:50166931-50221160:-,MAPK12->Oncogene{Bushman},chr22:50683879-50700254:-,mitogen-activated_protein_kinase_12	SNU1033_LARGE_INTESTINE	0.18	0.26	0.1167	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	CCAT1--CASC8	6	0	CCAT1	1279	chr8:128231055:-	CASC8	14106	chr8:128335399:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0583	0	LOCAL_REARRANGEMENT:-:[70729],CCAT1->chr8:128220111-128231333:-,colon_cancer_associated_transcript_1_(non-protein_coding),CASC8->cancer_susceptibility_candidate_8_(non-protein_coding),chr8:128302062-128494384:-	SNU1033_LARGE_INTESTINE	1	1	0.0583	TRUE	0	7	0	14	6	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	PFKL--MT-ND4L	6	0	PFKL	12218	chr21:45738452:+	MT-ND4L	24027	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0583	0	PFKL->chr21:45719934-45747259:+,phosphofructokinase,_liver_type,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	1	1	0.0583	FALSE	0	0	0	33	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	TSG101--EHF	5	4	TSG101	13995	chr11:18502032:-	EHF	31033	chr11:34678455:+	ONLY_REF_SPLICE	YES	33	84	0.21	0.1	0.0486	0.0389	TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101,EHF->ETS_homologous_factor,chr11:34642640-34682604:+	SNU1033_LARGE_INTESTINE	0.1	0.21	0.0875	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	DSE--NT5DC1	5	3	DSE	4234	chr6:116600894:+	NT5DC1	36779	chr6:116558129:+	ONLY_REF_SPLICE	YES	1	66	0.89	0.11	0.0486	0.0292	LOCAL_REARRANGEMENT:+:[4676],DSE->chr6:116575336-116762424:+,dermatan_sulfate_epimerase,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	SNU1033_LARGE_INTESTINE	0.11	0.89	0.0778	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	GPATCH1--RHPN2	5	3	GPATCH1	2448	chr19:33579100:+	RHPN2	28546	chr19:33517538:-	INCL_NON_REF_SPLICE	YES	12	133	0.4	0.06	0.0486	0.0292	LOCAL_INVERSION:+:-:[15992],GPATCH1->G-patch_domain_containing_1,chr19:33571786-33621448:+,RHPN2->chr19:33469499-33555794:-,rhophilin,_Rho_GTPase_binding_protein_2	SNU1033_LARGE_INTESTINE	0.06	0.4	0.0778	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ATP6--MT-CO1	5	2	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	9435	28529	0	0	0.0486	0.0194	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1033_LARGE_INTESTINE	0	0	0.068	FALSE	183	104	9	328	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ATP6--MT-CO1	5	2	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	9338	26209	0	0	0.0486	0.0194	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1033_LARGE_INTESTINE	0	0	0.068	FALSE	183	104	9	328	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO2--MT-ND2	5	2	MT-CO2	1320	chrM:7905:+	MT-ND2	5564	chrM:5349:+	INCL_NON_REF_SPLICE	YES	25486	608	0	0.01	0.0486	0.0194	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU1033_LARGE_INTESTINE	0	0.01	0.068	FALSE	105	46	5	21	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MYO7A--B3GNT6	5	2	MYO7A	5637	chr11:76858996:+	B3GNT6	53300	chr11:76750596:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0.0194	LOCAL_REARRANGEMENT:+:[86214],MYO7A->chr11:76839310-76926284:+,myosin_VIIA,B3GNT6->Oncogene{Bushman},UDP-GlcNAc:betaGal_beta-1,3-N-acetylglucosaminyltransferase_6,chr11:76745385-76753096:+	SNU1033_LARGE_INTESTINE	1	1	0.068	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ATP6--MT-CO1	5	1	MT-ATP6	1098	chrM:8624:+	MT-CO1	5629	chrM:6851:+	INCL_NON_REF_SPLICE	YES	9192	33067	0	0	0.0486	0.0097	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1033_LARGE_INTESTINE	0	0	0.0583	FALSE	183	104	9	328	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND5--MT-CO1	3	9	MT-ND5	2788	chrM:14124:+	MT-CO1	6245	chrM:6336:+	INCL_NON_REF_SPLICE	YES	0	19110	1	0	0.0292	0.0875	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1033_LARGE_INTESTINE	0	1	0.1167	FALSE	8	12	2	9	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	CTD-2555C10.3--TECPR2	5	0	CTD-2555C10.3	1323	chr14:103011913:+	TECPR2	25094	chr14:102916897:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0486	0	LOCAL_REARRANGEMENT:+:[42773],CTD-2555C10.3->chr14:103011591-103022163:+,TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2	SNU1033_LARGE_INTESTINE	1	1	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND5--MT-CO1	3	8	MT-ND5	2800	chrM:14136:+	MT-CO1	6350	chrM:6441:+	INCL_NON_REF_SPLICE	YES	0	29587	1	0	0.0292	0.0778	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1033_LARGE_INTESTINE	0	1	0.107	FALSE	8	11	2	9	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	3	8	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.0292	0.0778	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SNU1033_LARGE_INTESTINE	0.85	1	0.107	FALSE	407	2205	196	549	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	7	MT-ATP6	1400	chrM:8926:+	MT-CO1	5381	chrM:6603:+	INCL_NON_REF_SPLICE	YES	15969	31699	0	0	0.0292	0.068	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1033_LARGE_INTESTINE	0	0	0.0972	FALSE	183	104	9	328	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	APP--MT-ND2	4	2	APP	11652	chr21:27394197:-	MT-ND2	33030	chrM:5324:+	INCL_NON_REF_SPLICE	YES	1213	824	0	0.01	0.0389	0.0194	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU1033_LARGE_INTESTINE	0	0.01	0.0583	FALSE	0	1	0	51	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	HS6ST3--LINC00452	4	2	HS6ST3	1731	chr13:96743823:+	LINC00452	11458	chr13:114601499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0389	0.0194	HS6ST3->chr13:96743093-97485671:+,heparan_sulfate_6-O-sulfotransferase_3,LINC00452->chr13:114586640-114626485:+,long_intergenic_non-protein_coding_RNA_452	SNU1033_LARGE_INTESTINE	1	1	0.0583	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ATP6--MT-CO1	4	2	MT-ATP6	1171	chrM:8697:+	MT-CO1	5207	chrM:6429:+	INCL_NON_REF_SPLICE	YES	12465	28833	0	0	0.0389	0.0194	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1033_LARGE_INTESTINE	0	0	0.0583	FALSE	183	104	9	328	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO2--MT-ND2	4	2	MT-CO2	1279	chrM:7864:+	MT-ND2	5517	chrM:5302:+	INCL_NON_REF_SPLICE	YES	24265	1247	0	0	0.0389	0.0194	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU1033_LARGE_INTESTINE	0	0	0.0583	FALSE	105	46	5	21	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	C6orf15--MT-CO3	4	1	C6orf15	1356	chr6:31079981:-	MT-CO3	5680	chrM:9549:+	INCL_NON_REF_SPLICE	YES	4442	25273	0	0	0.0389	0.0097	C6orf15->chr6:31079000-31080336:-,chromosome_6_open_reading_frame_15,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	SNU1033_LARGE_INTESTINE	0	0	0.0486	FALSE	0	0	0	1	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	IGF2BP2--TRA2B	2	9	IGF2BP2	1274	chr3:185542571:-	TRA2B	35038	chr3:185643414:-	ONLY_REF_SPLICE	YES	179	411	0.06	0.03	0.0194	0.0875	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	SNU1033_LARGE_INTESTINE	0.03	0.06	0.1069	TRUE	0	0	0	1	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND5--MT-CO1	3	5	MT-ND5	2641	chrM:13977:+	MT-CO1	6350	chrM:6441:+	INCL_NON_REF_SPLICE	YES	2806	29587	0	0	0.0292	0.0486	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1033_LARGE_INTESTINE	0	0	0.0778	FALSE	8	12	2	9	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	APP--MT-ND2	4	0	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU1033_LARGE_INTESTINE	1	1	0.0389	FALSE	0	1	0	51	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	APP--MT-ND2	4	0	APP	11619	chr21:27394230:-	MT-ND2	32998	chrM:5292:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU1033_LARGE_INTESTINE	1	1	0.0389	FALSE	0	1	0	51	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO2--MT-ND2	3	4	MT-CO2	1276	chrM:7861:+	MT-ND2	5365	chrM:5150:+	INCL_NON_REF_SPLICE	YES	23947	5413	0	0	0.0292	0.0389	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU1033_LARGE_INTESTINE	0	0	0.0681	FALSE	105	46	5	21	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	4	0	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	1	1	0.0389	FALSE	344	821	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND5--MT-CO1	3	4	MT-ND5	2047	chrM:13383:+	MT-CO1	6313	chrM:6404:+	INCL_NON_REF_SPLICE	NO	6142	27729	0	0	0.0292	0.0389	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1033_LARGE_INTESTINE	0	0	0.0681	FALSE	8	12	2	9	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TN	4	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1033_LARGE_INTESTINE	1	1	0.0389	FALSE	369	2501	205	193	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TN	4	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0389	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1033_LARGE_INTESTINE	1	1	0.0389	FALSE	369	2501	205	193	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	NRIP1--AF127936.7	4	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0389	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1033_LARGE_INTESTINE	1	1	0.0389	FALSE	125	705	46	456	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	3	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	16	2	0.27	0.75	0.0292	0.0292	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1033_LARGE_INTESTINE	0.27	0.75	0.0584	FALSE	189	492	56	216	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND5--MT-CO1	3	3	MT-ND5	2169	chrM:13505:+	MT-CO1	6730	chrM:6821:+	INCL_NON_REF_SPLICE	YES	5938	33398	0	0	0.0292	0.0292	LOCAL_REARRANGEMENT:+:[4892],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1033_LARGE_INTESTINE	0	0	0.0584	FALSE	8	12	2	9	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	FAM132A--CPSF3L	3	2	FAM132A	2980	chr1:1179334:-	CPSF3L	16041	chr1:1250998:-	ONLY_REF_SPLICE	YES	9	137	0.36	0.04	0.0292	0.0194	LOCAL_REARRANGEMENT:-:[64863],FAM132A->chr1:1177826-1182102:-,family_with_sequence_similarity_132_member_A,CPSF3L->chr1:1246965-1260071:-,cleavage_and_polyadenylation_specific_factor_3-like	SNU1033_LARGE_INTESTINE	0.04	0.36	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	NO	11466	0	0	1	0.0292	0.0194	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1033_LARGE_INTESTINE	0	1	0.0486	FALSE	182	97	9	327	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ATP6--MT-CO1	3	2	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9583	31700	0	0	0.0292	0.0194	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SNU1033_LARGE_INTESTINE	0	0	0.0486	FALSE	183	104	9	328	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO2--MT-ND2	3	2	MT-CO2	1493	chrM:8078:+	MT-ND2	5517	chrM:5302:+	INCL_NON_REF_SPLICE	YES	12882	1247	0	0	0.0292	0.0194	LOCAL_REARRANGEMENT:+:[2075],MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	SNU1033_LARGE_INTESTINE	0	0	0.0486	FALSE	105	46	5	21	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND5--MT-CO2	3	2	MT-ND5	2236	chrM:13572:+	MT-CO2	6035	chrM:7808:+	INCL_NON_REF_SPLICE	YES	5284	20475	0	0	0.0292	0.0194	LOCAL_REARRANGEMENT:+:[4068],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	SNU1033_LARGE_INTESTINE	0	0	0.0486	FALSE	11	5	0	10	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	10	0	0.29	1	0.0292	0.0097	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	0.29	1	0.0389	FALSE	344	821	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	RUSC2--ATP8B5P	3	1	RUSC2	1046	chr9:35490169:+	ATP8B5P	31331	chr9:35473725:+	ONLY_REF_SPLICE	YES	3	0	0.57	1	0.0292	0.0097	LOCAL_REARRANGEMENT:+:[7098],RUSC2->RUN_and_SH3_domain_containing_2,chr9:35490124-35561895:+,ATP8B5P->ATPase_phospholipid_transporting_8B5,_pseudogene,chr9:35406752-35483026:+	SNU1033_LARGE_INTESTINE	0.57	1	0.0389	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	AP000525.9--LA16c-60G3.6	3	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SNU1033_LARGE_INTESTINE	1	1	0.0292	TRUE	0	42	0	133	42	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-CO3--MT-ATP6	3	0	MT-CO3	1138	chrM:9344:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	SNU1033_LARGE_INTESTINE	1	1	0.0292	FALSE	189	492	56	216	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	0	MT-ND4	1056	chrM:10815:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	1	1	0.0292	FALSE	344	821	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	0	MT-ND4	1039	chrM:10798:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	1	1	0.0292	FALSE	344	821	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SNU1033_LARGE_INTESTINE	1	1	0.0292	FALSE	344	821	44	306	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1033_LARGE_INTESTINE	1	1	0.0292	FALSE	499	1288	110	792	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1033_LARGE_INTESTINE	1	1	0.0292	FALSE	499	1288	110	792	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-ND6--MT-TE	3	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SNU1033_LARGE_INTESTINE	1	1	0.0292	FALSE	499	1288	110	792	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MT-TA--MT-TN	3	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	SNU1033_LARGE_INTESTINE	1	1	0.0292	FALSE	369	2501	205	193	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	PLEC--ZNF623	3	0	PLEC	3358	chr8:145047571:-	ZNF623	41587	chr8:144732068:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0292	0	PLEC->chr8:144989321-145050902:-,plectin,ZNF623->chr8:144718183-144735900:+,zinc_finger_protein_623	SNU1033_LARGE_INTESTINE	1	1	0.0292	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	RP5-857K21.11--MTATP6P1	3	0	RP5-857K21.11	1090	chr1:569845:+	MTATP6P1	4851	chr1:569379:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0292	0	GTEx_FI:{Heart=[count:11=pct:4.4],Brain=[count:6=pct:0.9],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},RP5-857K21.11->chr1:569756-570302:+,MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1	SNU1033_LARGE_INTESTINE	1	1	0.0292	TRUE	16	42	4	10	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	EDF1--NPDC1	2	3	EDF1	3072	chr9:139757358:-	NPDC1	10409	chr9:139935639:-	ONLY_REF_SPLICE	YES	472	60	0.01	0.08	0.0194	0.0292	{Klijn_CCL:Lung=1,Cervix=1,Pancreas=1},EDF1->chr9:139756571-139760738:-,endothelial_differentiation_related_factor_1,NPDC1->chr9:139933922-139940655:-,neural_proliferation,_differentiation_and_control,_1	SNU1033_LARGE_INTESTINE	0.01	0.08	0.0486	FALSE	0	0	0	5	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	CCDC138--RANBP2	2	2	CCDC138	2217	chr2:109404545:+	RANBP2	24868	chr2:109345588:+	ONLY_REF_SPLICE	YES	39	49	0.09	0.08	0.0194	0.0194	LOCAL_REARRANGEMENT:+:[946],CCDC138->chr2:109403213-109501933:+,coiled-coil_domain_containing_138,RANBP2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},RAN_binding_protein_2,chr2:109335937-109402267:+	SNU1033_LARGE_INTESTINE	0.08	0.09	0.0388	TRUE	0	0	0	1	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	DSE--NT5DC1	1	6	DSE	4763	chr6:116601423:+	NT5DC1	36779	chr6:116558129:+	ONLY_REF_SPLICE	YES	1	66	0.88	0.1	0.0097	0.0583	LOCAL_REARRANGEMENT:+:[4676],DSE->chr6:116575336-116762424:+,dermatan_sulfate_epimerase,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	SNU1033_LARGE_INTESTINE	0.1	0.88	0.068	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	FBRSL1--NOC4L	2	2	FBRSL1	19923	chr12:133153517:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	92	61	0.04	0.06	0.0194	0.0194	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	SNU1033_LARGE_INTESTINE	0.04	0.06	0.0388	TRUE	1	4	0	5	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	CTD-2555C10.3--TECPR2	2	1	CTD-2555C10.3	2486	chr14:103016845:+	TECPR2	25094	chr14:102916897:+	ONLY_REF_SPLICE	YES	1	9	0.75	0.25	0.0194	0.0097	LOCAL_REARRANGEMENT:+:[42773],CTD-2555C10.3->chr14:103011591-103022163:+,TECPR2->chr14:102829300-102968818:+,tectonin_beta-propeller_repeat_containing_2	SNU1033_LARGE_INTESTINE	0.25	0.75	0.0291	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	NKD2--LPCAT1	2	1	NKD2	1732	chr5:1009675:+	LPCAT1	20387	chr5:1481091:-	ONLY_REF_SPLICE	YES	225	93	0.01	0.03	0.0194	0.0097	HGNC_GENEFAM,NKD2->chr5:1008944-1039058:+,naked_cuticle_homolog_2,LPCAT1->chr5:1456595-1524092:-,lysophosphatidylcholine_acyltransferase_1	SNU1033_LARGE_INTESTINE	0.01	0.03	0.0291	FALSE	0	0	0	1	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	ATP5B--PTGES3	2	0	ATP5B	3612	chr12:57037187:-	PTGES3	12702	chr12:57066849:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},LOCAL_REARRANGEMENT:-:[17329],ATP5B->ATP_synthase,_H+_transporting,_mitochondrial_F1_complex,_beta_polypeptide,chr12:57031959-57039798:-,PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	BRD1--MAPK12	2	0	BRD1	8449	chr22:50197852:-	MAPK12	24052	chr22:50696730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	BRD1->bromodomain_containing_1,chr22:50166931-50221160:-,MAPK12->Oncogene{Bushman},chr22:50683879-50700254:-,mitogen-activated_protein_kinase_12	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	COL18A1--BX322557.13	2	0	COL18A1	3025	chr21:46876090:+	BX322557.13	39738	chr21:46758311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_REARRANGEMENT:+:[66472],COL18A1->chr21:46825052-46933634:+,collagen_type_XVIII_alpha_1,BX322557.13->chr21:46756622-46758580:+	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	DSE--NT5DC1	2	0	DSE	2645	chr6:116580130:+	NT5DC1	36779	chr6:116558129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	LOCAL_REARRANGEMENT:+:[4676],DSE->chr6:116575336-116762424:+,dermatan_sulfate_epimerase,NT5DC1->5'-nucleotidase_domain_containing_1,chr6:116422012-116570660:+	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	ELAVL1--C2orf54	2	0	ELAVL1	3505	chr19:8056528:-	C2orf54	19737	chr2:241831180:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	ELAVL1->ELAV_like_RNA_binding_protein_1,Oncogene{Bushman},chr19:8023463-8070543:-,C2orf54->chr2:241825465-241836306:-,chromosome_2_open_reading_frame_54	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	GAB2--NARS2	2	0	GAB2	1703	chr11:78128692:-	NARS2	36514	chr11:78154804:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_v2:{count=2;pct=0.02%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Adipose_-_Subcutaneous=1},LOCAL_REARRANGEMENT:-:[17613],GAB2->GRB2_associated_binding_protein_2,Oncogene{Bushman},chr11:77926343-78129394:-,NARS2->asparaginyl-tRNA_synthetase_2,_mitochondrial_(putative),chr11:78147007-78285919:-	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	2	0	2	1	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	GIGYF2--TPM3P9	2	0	GIGYF2	4148	chr2:233568199:+	TPM3P9	57673	chr19:53945049:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GIGYF2->GRB10_interacting_GYF_protein_2,chr2:233562009-233725285:+,TPM3P9->chr19:53935237-53947923:+,tropomyosin_3_pseudogene_9	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	OSBPL5--CD81	2	0	OSBPL5	2524	chr11:3186446:-	CD81	37949	chr11:2411642:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	OSBPL5->chr11:3108346-3187969:-,oxysterol_binding_protein_like_5,CD81->CD81_molecule,chr11:2397407-2418649:+	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	RALGPS1--MVB12B	2	0	RALGPS1	1703	chr9:129677755:+	MVB12B	41006	chr9:129102787:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	RALGPS1->Ral_GEF_with_PH_domain_and_SH3_binding_motif_1,chr9:129677053-129985445:+,MVB12B->chr9:129089128-129269320:+,multivesicular_body_subunit_12B	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	RBM6--ZNF736	2	0	RBM6	8238	chr3:50012825:+	ZNF736	42582	chr7:63808468:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	RBM6->RNA_binding_motif_protein_6,chr3:49977440-50137478:+,ZNF736->chr7:63767837-63815238:+,zinc_finger_protein_736	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	TRA2B--RAB2A	2	0	TRA2B	1312	chr3:185655613:-	RAB2A	31078	chr8:61504417:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila),RAB2A->RAB2A,_member_RAS_oncogene_family,chr8:61429416-61536186:+	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	TSG101--EHF	1	4	TSG101	14577	chr11:18501450:-	EHF	31033	chr11:34678455:+	ONLY_REF_SPLICE	YES	3	84	0.62	0.06	0.0097	0.0389	TSG101->Oncogene{Bushman},chr11:18489883-18548779:-,tumor_susceptibility_101,EHF->ETS_homologous_factor,chr11:34642640-34682604:+	SNU1033_LARGE_INTESTINE	0.06	0.62	0.0486	TRUE	0	0	0	1	0	TRUE	ACH-000286
SNU1033_LARGE_INTESTINE	TULP4--RP11-732M18.3	2	0	TULP4	2609	chr6:158735300:+	RP11-732M18.3	28124	chr6:158703295:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0194	0	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	SNU1033_LARGE_INTESTINE	1	1	0.0194	TRUE	121	131	5	12	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	C7orf50--MAD1L1	1	3	C7orf50	12142	chr7:1040106:-	MAD1L1	55558	chr7:1855864:-	ONLY_REF_SPLICE	YES	381	64	0.01	0.06	0.0097	0.0292	{Klijn_CCL:Skin=1},C7orf50->chr7:1036622-1177896:-,chromosome_7_open_reading_frame_50,MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-	SNU1033_LARGE_INTESTINE	0.01	0.06	0.0389	FALSE	0	2	0	4	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	C1orf131--GNPAT	1	2	C1orf131	2496	chr1:231374603:-	GNPAT	15457	chr1:231396253:+	ONLY_REF_SPLICE	YES	69	105	0.04	0.03	0.0097	0.0194	LOCAL_INVERSION:-:+:[20],C1orf131->chr1:231359509-231376933:-,chromosome_1_open_reading_frame_131,GNPAT->chr1:231376953-231413719:+,glyceronephosphate_O-acyltransferase	SNU1033_LARGE_INTESTINE	0.03	0.04	0.0291	TRUE	0	0	0	1	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	C1orf131--GNPAT	1	2	C1orf131	2496	chr1:231374603:-	GNPAT	14274	chr1:231386707:+	ONLY_REF_SPLICE	NO	69	97	0.04	0.03	0.0097	0.0194	LOCAL_INVERSION:-:+:[20],C1orf131->chr1:231359509-231376933:-,chromosome_1_open_reading_frame_131,GNPAT->chr1:231376953-231413719:+,glyceronephosphate_O-acyltransferase	SNU1033_LARGE_INTESTINE	0.03	0.04	0.0291	TRUE	0	0	0	1	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	FBRSL1--NOC4L	1	2	FBRSL1	12572	chr12:133136816:+	NOC4L	33271	chr12:132635526:+	ONLY_REF_SPLICE	YES	35	61	0.08	0.05	0.0097	0.0194	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Small_Intestine=[count:2=pct:3.6],Spleen=[count:2=pct:1.8],Whole_Blood=[count:1=pct:0.8],Adrenal_Gland=[count:1=pct:1.2],Brain=[count:1=pct:0.2],Esophagus=[count:1=pct:0.2],Blood=[count:1=pct:0.6]},GTEx_v2:{count=6;pct=0.07%;dist=Small_Intestine_-_Terminal_Ileum=1,Pituitary=1,Artery_-_Tibial=1,Testis=1,Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Cortex=1},FBRSL1->chr12:133066137-133161774:+,fibrosin_like_1,NOC4L->chr12:132628993-132637013:+,nucleolar_complex_associated_4_homolog	SNU1033_LARGE_INTESTINE	0.05	0.08	0.0291	TRUE	3	48	0	26	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	BOP1--SCRIB	1	1	BOP1	4671	chr8:145500212:-	SCRIB	26662	chr8:144877700:-	ONLY_REF_SPLICE	YES	280	242	0.01	0.01	0.0097	0.0097	BOP1->Oncogene{Bushman},block_of_proliferation_1,chr8:145486055-145515082:-,SCRIB->chr8:144873090-144897549:-,scribbled_planar_cell_polarity_protein	SNU1033_LARGE_INTESTINE	0.01	0.01	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	LRPAP1--DOK7	1	1	LRPAP1	2817	chr4:3526634:-	DOK7	29054	chr4:3498547:+	ONLY_REF_SPLICE	YES	138	2	0.01	0.5	0.0097	0.0097	LOCAL_INVERSION:-:+:[4903],LRPAP1->LDL_receptor_related_protein_associated_protein_1,chr4:3508103-3534286:-,DOK7->chr4:3465033-3503200:+,docking_protein_7	SNU1033_LARGE_INTESTINE	0.01	0.5	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	MPG--UBE2I	1	1	MPG	5043	chr16:133255:+	UBE2I	17353	chr16:1364021:+	ONLY_REF_SPLICE	YES	218	297	0.01	0.01	0.0097	0.0097	MPG->N-methylpurine_DNA_glycosylase,chr16:127006-135852:+,UBE2I->chr16:1355548-1377019:+,ubiquitin_conjugating_enzyme_E2_I	SNU1033_LARGE_INTESTINE	0.01	0.01	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	NKD2--LPCAT1	1	1	NKD2	1732	chr5:1009675:+	LPCAT1	23705	chr5:1474800:-	ONLY_REF_SPLICE	YES	225	107	0.01	0.02	0.0097	0.0097	HGNC_GENEFAM,NKD2->chr5:1008944-1039058:+,naked_cuticle_homolog_2,LPCAT1->chr5:1456595-1524092:-,lysophosphatidylcholine_acyltransferase_1	SNU1033_LARGE_INTESTINE	0.01	0.02	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	NR6A1--PSMB7	1	1	NR6A1	2333	chr9:127495587:-	PSMB7	30100	chr9:127119194:-	ONLY_REF_SPLICE	NO	10	586	0.17	0	0.0097	0.0097	{Klijn_CCL:Pancreas=1,Other=1},NR6A1->chr9:127279554-127533589:-,nuclear_receptor_subfamily_6_group_A_member_1,PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7	SNU1033_LARGE_INTESTINE	0	0.17	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	14	0	0.12	1	0.0097	0.0097	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SNU1033_LARGE_INTESTINE	0.12	1	0.0194	FALSE	164	806	69	479	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	RP11-108K3.1--GLDN	1	1	RP11-108K3.1	2262	chr15:51570247:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0097	0.0097	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SNU1033_LARGE_INTESTINE	1	1	0.0194	FALSE	0	19	0	46	0	FALSE	ACH-000286
SNU1033_LARGE_INTESTINE	SLC17A9--RBM38	1	1	SLC17A9	1190	chr20:61584241:+	RBM38	18774	chr20:55982599:+	ONLY_REF_SPLICE	YES	196	111	0.01	0.02	0.0097	0.0097	SLC17A9->chr20:61584052-61599949:+,solute_carrier_family_17_member_9,RBM38->RNA_binding_motif_protein_38,chr20:55966463-55984389:+	SNU1033_LARGE_INTESTINE	0.01	0.02	0.0194	FALSE	0	0	0	1	0	FALSE	ACH-000286
RERFLCAD2_LUNG	SRGAP1--OS9	681	117	SRGAP1	1591	chr12:64238663:+	OS9	38849	chr12:58109543:+	ONLY_REF_SPLICE	YES	1	2028	1	0.28	6.9891	1.2008	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	RERFLCAD2_LUNG	0.28	1	8.1899	TRUE	0	1	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	SRGAP1--OS9	244	169	SRGAP1	1591	chr12:64238663:+	OS9	36171	chr12:58088533:+	ONLY_REF_SPLICE	YES	1	2684	1	0.13	2.5042	1.7345	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	RERFLCAD2_LUNG	0.13	1	4.2387	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TN	147	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5087	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RERFLCAD2_LUNG	1	1	1.5087	FALSE	369	2501	205	193	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	141	5	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	23234	1739	0.01	0.08	1.4471	0.0513	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0.01	0.08	1.4984	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	SPINT2--YIF1B	96	37	SPINT2	2641	chr19:38755638:+	YIF1B	16141	chr19:38800283:-	ONLY_REF_SPLICE	YES	1936	54	0.06	0.71	0.9853	0.3797	LOCAL_INVERSION:+:-:[12499],SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2,YIF1B->Yip1_interacting_factor_homolog_B,_membrane_trafficking_protein,chr19:38795753-38807913:-	RERFLCAD2_LUNG	0.06	0.71	1.365	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TC	98	12	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0058	0.1232	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCAD2_LUNG	1	1	1.129	FALSE	462	80	0	856	0	FALSE	ACH-000774
RERFLCAD2_LUNG	TIMM23B--LINC00843	87	30	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8929	0.3079	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RERFLCAD2_LUNG	1	1	1.2008	TRUE	508	994	45	981	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	75	34	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	13383	1	0.01	0.99	0.7697	0.3489	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.01	0.99	1.1186	FALSE	344	827	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	14	269	MT-ND4	1499	chrM:11258:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	734	0	0.28	1	0.1437	2.7608	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.28	1	2.9045	FALSE	344	827	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	10	263	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	23	1	0.92	1	0.1026	2.6992	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.92	1	2.8018	FALSE	344	826	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	7	266	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	36	0	0.88	1	0.0718	2.73	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.88	1	2.8018	FALSE	344	826	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	70	7	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7184	0.0718	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	1	1	0.7902	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	5	266	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	36	0	0.88	1	0.0513	2.73	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.88	1	2.7813	FALSE	344	827	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	5	263	MT-ND4	1159	chrM:10918:+	MT-ND4L	5503	chrM:10594:+	INCL_NON_REF_SPLICE	YES	25	2	0.91	0.99	0.0513	2.6992	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.91	0.99	2.7505	FALSE	344	826	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	3	266	MT-ND4	1263	chrM:11022:+	MT-ND4L	5468	chrM:10559:+	INCL_NON_REF_SPLICE	YES	48	0	0.85	1	0.0308	2.73	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.85	1	2.7608	FALSE	344	827	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	3	265	MT-ND4	1754	chrM:11513:+	MT-ND4L	5530	chrM:10621:+	INCL_NON_REF_SPLICE	YES	7978	0	0.03	1	0.0308	2.7197	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.03	1	2.7505	FALSE	344	827	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	3	264	MT-ND4	1220	chrM:10979:+	MT-ND4L	5521	chrM:10612:+	INCL_NON_REF_SPLICE	YES	36	1	0.88	1	0.0308	2.7094	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.88	1	2.7402	FALSE	344	827	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	3	264	MT-ND4	1285	chrM:11044:+	MT-ND4L	5513	chrM:10604:+	INCL_NON_REF_SPLICE	YES	60	1	0.82	1	0.0308	2.7094	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.82	1	2.7402	FALSE	344	827	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	3	263	MT-ND4	1175	chrM:10934:+	MT-ND4L	5520	chrM:10611:+	INCL_NON_REF_SPLICE	YES	30	1	0.9	1	0.0308	2.6992	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.9	1	2.73	FALSE	344	826	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	3	258	MT-ND4	1192	chrM:10951:+	MT-ND4L	5534	chrM:10625:+	INCL_NON_REF_SPLICE	NO	34	0	0.88	1	0.0308	2.6479	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.88	1	2.6787	FALSE	344	826	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	SRGAP1--OS9	36	126	SRGAP1	1591	chr12:64238663:+	OS9	37201	chr12:58089563:+	ONLY_REF_SPLICE	YES	1	2612	0.99	0.06	0.3695	1.2931	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	RERFLCAD2_LUNG	0.06	0.99	1.6626	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	13	193	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	0	0.97	1	0.1334	1.9808	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.97	1	2.1142	FALSE	344	821	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	TIMM23--RP11-464F9.1	51	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	135	3	0.29	0.95	0.5234	0.0308	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	RERFLCAD2_LUNG	0.29	0.95	0.5542	TRUE	519	3926	326	965	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	5	184	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	18	0	0.91	1	0.0513	1.8884	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.91	1	1.9397	FALSE	344	826	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	4	177	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	19	0	0.91	1	0.0411	1.8166	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.91	1	1.8577	FALSE	344	826	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	40	26	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.93	1	0.4105	0.2668	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	0.93	1	0.6773	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TN	16	107	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1642	1.0981	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RERFLCAD2_LUNG	1	1	1.2623	FALSE	369	2501	205	193	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	4	147	MT-ND4	1170	chrM:10929:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	27	1	0.85	0.99	0.0411	1.5087	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.85	0.99	1.5498	FALSE	344	826	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	36	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3695	0.0821	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	1	1	0.4516	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TN	20	71	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2053	0.7287	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RERFLCAD2_LUNG	1	1	0.934	FALSE	369	2501	205	193	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	4	124	MT-ND4	1164	chrM:10923:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	26	1	0.83	0.99	0.0411	1.2726	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.83	0.99	1.3137	FALSE	344	826	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	SRGAP1--OS9	3	126	SRGAP1	1591	chr12:64238663:+	OS9	36964	chr12:58089326:+	ONLY_REF_SPLICE	YES	1	2868	0.99	0.04	0.0308	1.2931	SRGAP1->SLIT-ROBO_Rho_GTPase_activating_protein_1,chr12:64238073-64541613:+,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	RERFLCAD2_LUNG	0.04	0.99	1.3239	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TN	17	52	MT-TA	1054	chrM:5602:-	MT-TN	4092	chrM:5707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1745	0.5337	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RERFLCAD2_LUNG	1	1	0.7082	FALSE	369	2501	205	193	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-CO2	26	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	110	3	0.23	0.91	0.2668	0.0616	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCAD2_LUNG	0.23	0.91	0.3284	FALSE	59	21	0	114	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	4	93	MT-ND4	1039	chrM:10798:+	MT-ND4L	5540	chrM:10631:+	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0411	0.9545	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	1	1	0.9956	FALSE	344	821	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	26	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	19066	5	0	0.84	0.2668	0.0103	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	0.84	0.2771	FALSE	230	193	14	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TN	24	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2463	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RERFLCAD2_LUNG	1	1	0.2463	FALSE	369	2501	205	193	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	3	82	MT-ND4	1073	chrM:10832:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	6	1	0.93	0.99	0.0308	0.8416	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.93	0.99	0.8724	FALSE	344	821	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TC	20	13	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2053	0.1334	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCAD2_LUNG	1	1	0.3387	FALSE	462	80	0	856	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	4	75	MT-ND4	1031	chrM:10790:+	MT-ND4L	5488	chrM:10579:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0.7697	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	1	1	0.8108	FALSE	344	821	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	14	34	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	600	1	0.07	0.98	0.1437	0.3489	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.07	0.98	0.4926	FALSE	344	827	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-CO2	20	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	110	2	0.19	0.93	0.2053	0.0616	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCAD2_LUNG	0.19	0.93	0.2669	FALSE	59	21	0	114	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	3	74	MT-ND4	1074	chrM:10833:+	MT-ND4L	5624	chrM:10715:+	INCL_NON_REF_SPLICE	YES	7	1	0.92	0.99	0.0308	0.7595	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.92	0.99	0.7903	FALSE	344	821	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	4	69	MT-ND4	1125	chrM:10884:+	MT-ND4L	5651	chrM:10742:+	INCL_NON_REF_SPLICE	YES	20	1	0.78	0.99	0.0411	0.7082	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.78	0.99	0.7493	FALSE	344	826	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	RP11-96H19.1--RP11-446N19.1	19	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	2	2	0.93	0.93	0.195	0.0718	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCAD2_LUNG	0.93	0.93	0.2668	FALSE	515	4851	409	746	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	12	34	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1200	1	0.04	0.98	0.1232	0.3489	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.04	0.98	0.4721	FALSE	344	827	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-RNR2	18	6	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	16073	11784	0	0	0.1847	0.0616	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCAD2_LUNG	0	0	0.2463	FALSE	63	17	1	58	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	5	58	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.97	0.0513	0.5953	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.97	1	0.6466	FALSE	344	821	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TN	11	30	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1129	0.3079	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RERFLCAD2_LUNG	1	1	0.4208	FALSE	369	2501	205	193	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	10	33	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1026	0.3387	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	1	1	0.4413	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	4	53	MT-ND4	1201	chrM:10960:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	39	1	0.59	0.98	0.0411	0.5439	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.59	0.98	0.585	FALSE	344	826	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	3	54	MT-ND4	1773	chrM:11532:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	9192	1	0.01	0.98	0.0308	0.5542	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.01	0.98	0.585	FALSE	344	827	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	TMLHE--CYTH3	16	2	TMLHE	2332	chrX:154842453:-	CYTH3	16935	chr7:6230162:-	ONLY_REF_SPLICE	YES	12	20	0.6	0.47	0.1642	0.0205	TMLHE->chrX:154719776-154899605:-,trimethyllysine_hydroxylase,_epsilon,CYTH3->chr7:6201407-6312275:-,cytohesin_3	RERFLCAD2_LUNG	0.47	0.6	0.1847	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	5	44	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.0513	0.4516	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	0.92	1	0.5029	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TN	7	35	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0718	0.3592	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RERFLCAD2_LUNG	1	1	0.431	FALSE	369	2501	205	193	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	9	26	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	34	0	0.51	1	0.0924	0.2668	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.51	1	0.3592	FALSE	344	826	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	8	29	MT-ND4	1013	chrM:10772:+	MT-ND4L	5572	chrM:10663:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0821	0.2976	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	1	1	0.3797	FALSE	344	821	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TN	5	41	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0.4208	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RERFLCAD2_LUNG	1	1	0.4721	FALSE	369	2501	205	193	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-CO2	14	4	MT-ATP6	1261	chrM:8787:+	MT-CO2	5014	chrM:7918:+	INCL_NON_REF_SPLICE	YES	159	15	0.1	0.55	0.1437	0.0411	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCAD2_LUNG	0.1	0.55	0.1848	FALSE	59	21	0	114	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	13	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	23576	9	0	0.69	0.1334	0.0718	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	0.69	0.2052	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	4	42	MT-ND6	1162	chrM:14512:-	MT-TE	4552	chrM:14716:-	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.0411	0.431	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	0.94	1	0.4721	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	C15orf57--CBX3	11	13	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	39	28	0.38	0.46	0.1129	0.1334	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	RERFLCAD2_LUNG	0.38	0.46	0.2463	TRUE	267	562	48	632	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	6	33	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	36	1	0.52	0.97	0.0616	0.3387	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.52	0.97	0.4003	FALSE	344	826	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	RP11-123O10.4--GRIP1	14	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1437	0.0103	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	RERFLCAD2_LUNG	1	1	0.154	FALSE	416	2512	207	587	0	FALSE	ACH-000774
RERFLCAD2_LUNG	RP11-96H19.1--PPHLN1	13	5	RP11-96H19.1	2709	chr12:46781755:+	PPHLN1	29187	chr12:42835117:+	ONLY_REF_SPLICE	YES	2	63	0.9	0.22	0.1334	0.0513	RP11-96H19.1->chr12:46777462-46850051:+,PPHLN1->chr12:42632249-42853517:+,periphilin_1	RERFLCAD2_LUNG	0.22	0.9	0.1847	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	3	42	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.0308	0.431	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	0.92	1	0.4618	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TC	13	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1334	0.0205	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCAD2_LUNG	1	1	0.1539	FALSE	462	80	0	856	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	4	36	MT-ND4	1188	chrM:10947:+	MT-ND4L	5660	chrM:10751:+	INCL_NON_REF_SPLICE	YES	34	1	0.54	0.98	0.0411	0.3695	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.54	0.98	0.4106	FALSE	344	826	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TN	13	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1334	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RERFLCAD2_LUNG	1	1	0.1334	FALSE	369	2501	205	193	0	FALSE	ACH-000774
RERFLCAD2_LUNG	RP11-114H23.1--RP11-114H23.2	11	8	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	5	0	0.79	1	0.1129	0.0821	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	RERFLCAD2_LUNG	0.79	1	0.195	FALSE	81	155	12	160	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	6	26	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.0616	0.2668	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	0.89	1	0.3284	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	TMED3--RP11-720L8.1	12	2	TMED3	5522	chr15:79614493:+	RP11-720L8.1	13375	chr15:37712386:-	INCL_NON_REF_SPLICE	YES	314	0	0.04	1	0.1232	0.0205	TMED3->chr15:79603404-79704334:+,transmembrane_p24_trafficking_protein_3,RP11-720L8.1->chr15:37657228-37783009:-	RERFLCAD2_LUNG	0.04	1	0.1437	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-CO2	11	5	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	103	0	0.13	1	0.1129	0.0513	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCAD2_LUNG	0.13	1	0.1642	FALSE	59	21	0	114	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	11	4	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1129	0.0411	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	1	1	0.154	FALSE	344	821	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	4	32	MT-ND6	1302	chrM:14372:-	MT-TE	4564	chrM:14704:-	INCL_NON_REF_SPLICE	YES	7	0	0.84	1	0.0411	0.3284	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	0.84	1	0.3695	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TC	8	16	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0821	0.1642	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCAD2_LUNG	1	1	0.2463	FALSE	462	80	0	856	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TN	12	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1232	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RERFLCAD2_LUNG	1	1	0.1232	FALSE	369	2501	205	193	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	8	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22517	100	0	0.17	0.0821	0.1232	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	0.17	0.2053	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	NIPA2--POLA1	11	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1129	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	RERFLCAD2_LUNG	1	1	0.1129	TRUE	46	1352	75	139	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	7	15	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	61	0	0.27	1	0.0718	0.1539	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.27	1	0.2257	FALSE	344	827	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TC	6	19	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0.195	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCAD2_LUNG	1	1	0.2566	FALSE	462	80	0	856	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	7	14	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3700	100	0.01	0.17	0.0718	0.1437	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0.01	0.17	0.2155	FALSE	216	209	16	281	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	7	13	MT-ND4	1093	chrM:10852:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	11	0	0.65	1	0.0718	0.1334	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.65	1	0.2052	FALSE	344	826	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	RP11-96H19.1--RP11-446N19.1	8	9	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.0821	0.0924	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCAD2_LUNG	0.89	1	0.1745	FALSE	407	2205	196	549	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TN	10	0	MT-TA	1059	chrM:5597:-	MT-TN	4128	chrM:5671:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1026	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RERFLCAD2_LUNG	1	1	0.1026	FALSE	369	2501	205	193	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	9	3	MT-ND4	1477	chrM:11236:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	24655	9	0	0.57	0.0924	0.0308	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	0.57	0.1232	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	8	5	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	24540	0	0	1	0.0821	0.0513	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	1	0.1334	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-CO2	8	4	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	83	0	0.13	1	0.0821	0.0411	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCAD2_LUNG	0.13	1	0.1232	FALSE	59	21	0	114	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	4	20	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	68	0	0.26	1	0.0411	0.2053	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0.26	1	0.2464	FALSE	213	207	15	279	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	9	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0924	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	1	1	0.0924	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MTATP6P1--MT-ND1	9	0	MTATP6P1	1126	chr1:569201:+	MT-ND1	4895	chrM:3520:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0924	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	RERFLCAD2_LUNG	1	1	0.0924	FALSE	16	0	0	13	0	FALSE	ACH-000774
RERFLCAD2_LUNG	CLTC--RPS6KB1	8	3	CLTC	15918	chr17:57746301:+	RPS6KB1	41184	chr17:57987923:+	ONLY_REF_SPLICE	YES	86	24	0.11	0.31	0.0821	0.0308	{Klijn_CCL:Pancreas=1,Kidney=1,Skin=1,Lung=1,Ovary=1},CLTC->Oncogene{Bushman},chr17:57697219-57773671:+,clathrin_heavy_chain,RPS6KB1->chr17:57970447-58027925:+,ribosomal_protein_S6_kinase_B1	RERFLCAD2_LUNG	0.11	0.31	0.1129	TRUE	0	1	0	2	0	TRUE	ACH-000774
RERFLCAD2_LUNG	ARMC1--RP11-318M2.2	8	2	ARMC1	3528	chr8:66539451:-	RP11-318M2.2	19136	chr8:104258912:-	ONLY_REF_SPLICE	YES	93	4	0.1	0.71	0.0821	0.0205	ARMC1->armadillo_repeat_containing_1,chr8:66514694-66546442:-,RP11-318M2.2->chr8:104169218-104311000:-	RERFLCAD2_LUNG	0.1	0.71	0.1026	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	8	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	21697	9	0	0.53	0.0821	0.0205	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	0.53	0.1026	FALSE	231	205	14	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	6	10	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	23155	0	0	1	0.0616	0.1026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	1	0.1642	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	NRIP1--AF127936.7	8	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	1	0	0.9	1	0.0821	0.0103	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFLCAD2_LUNG	0.9	1	0.0924	FALSE	292	1546	117	613	0	FALSE	ACH-000774
RERFLCAD2_LUNG	CCND1--MT-ND1	8	0	CCND1	1290	chr11:69456144:+	MT-ND1	12240	chrM:3322:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0821	0	CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	RERFLCAD2_LUNG	1	1	0.0821	FALSE	0	0	0	5	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	8	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0821	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	1	1	0.0821	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TC	4	16	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0.1642	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCAD2_LUNG	1	1	0.2053	FALSE	462	80	0	856	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-RNR2	5	11	MT-ATP6	1153	chrM:8679:+	MT-RNR2	4689	chrM:1678:+	INCL_NON_REF_SPLICE	YES	16073	0	0	1	0.0513	0.1129	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCAD2_LUNG	0	1	0.1642	FALSE	63	17	1	58	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	4	15	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	39	0	0.33	1	0.0411	0.1539	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.33	1	0.195	FALSE	344	826	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	4	15	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	35	0	0.35	1	0.0411	0.1539	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	0.35	1	0.195	FALSE	344	826	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	STARD7--RNF121	7	3	STARD7	5257	chr2:96858107:-	RNF121	22727	chr11:71705765:+	ONLY_REF_SPLICE	YES	203	123	0.05	0.08	0.0718	0.0308	STARD7->StAR_related_lipid_transfer_domain_containing_7,chr2:96850597-96874563:-,RNF121->chr11:71639747-71708643:+,ring_finger_protein_121	RERFLCAD2_LUNG	0.05	0.08	0.1026	TRUE	0	0	0	1	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	4	14	MT-ND6	1261	chrM:14413:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	6	0	0.75	1	0.0411	0.1437	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	0.75	1	0.1848	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	6	5	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	25266	0	0	1	0.0616	0.0513	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	1	0.1129	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	3	17	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	23983	0	0	1	0.0308	0.1745	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	1	0.2053	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	6	5	MT-ND4	1474	chrM:11233:+	MT-ATP8	5421	chrM:8408:+	INCL_NON_REF_SPLICE	YES	24559	0	0	1	0.0616	0.0513	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	1	0.1129	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MTATP6P1--hsa-mir-6723	7	1	MTATP6P1	1117	chr1:569192:+	hsa-mir-6723	5321	chr1:567093:+	INCL_NON_REF_SPLICE	NO	1620	1107	0	0.01	0.0718	0.0103	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	RERFLCAD2_LUNG	0	0.01	0.0821	FALSE	2	7	0	3	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	3	16	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	24229	0	0	1	0.0308	0.1642	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	1	0.195	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	7	0	MT-ND4	1009	chrM:10768:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0718	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	1	1	0.0718	FALSE	344	821	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MTATP6P1--MT-ND1	7	0	MTATP6P1	1127	chr1:569202:+	MT-ND1	5166	chrM:3791:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0718	0	MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	RERFLCAD2_LUNG	1	1	0.0718	FALSE	16	0	0	13	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	3	15	MT-ND4	2235	chrM:11994:+	MT-ATP8	5468	chrM:8455:+	INCL_NON_REF_SPLICE	YES	5733	3	0	0.86	0.0308	0.1539	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	0.86	0.1847	FALSE	216	209	16	281	0	FALSE	ACH-000774
RERFLCAD2_LUNG	NRIP1--AF127936.7	6	3	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.5	1	0.0616	0.0308	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFLCAD2_LUNG	0.5	1	0.0924	FALSE	125	705	46	456	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-CO2	5	6	MT-ATP6	1158	chrM:8684:+	MT-CO2	4816	chrM:7720:+	INCL_NON_REF_SPLICE	YES	110	0	0.09	1	0.0513	0.0616	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCAD2_LUNG	0.09	1	0.1129	FALSE	59	21	0	114	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-CO2	5	6	MT-ATP6	1163	chrM:8689:+	MT-CO2	4822	chrM:7726:+	INCL_NON_REF_SPLICE	YES	111	0	0.09	1	0.0513	0.0616	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCAD2_LUNG	0.09	1	0.1129	FALSE	59	21	0	114	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-RNR2	6	2	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	13519	0	0	1	0.0616	0.0205	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCAD2_LUNG	0	1	0.0821	FALSE	63	17	1	58	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	4	10	MT-ND4	1756	chrM:11515:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	22999	0	0	1	0.0411	0.1026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	1	0.1437	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	4	10	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	23662	0	0	1	0.0411	0.1026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	1	0.1437	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	3	14	MT-ND6	1345	chrM:14329:-	MT-TE	4580	chrM:14688:-	INCL_NON_REF_SPLICE	YES	8	0	0.68	1	0.0308	0.1437	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	0.68	1	0.1745	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	5	5	MT-ND4	1474	chrM:11233:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	24559	0	0	1	0.0513	0.0513	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	1	0.1026	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	6	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19066	9	0	0.44	0.0616	0.0103	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	0.44	0.0719	FALSE	230	193	14	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	5	5	MT-ND6	1060	chrM:14614:-	MT-TE	4560	chrM:14708:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0.0513	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	1	1	0.1026	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TC	3	13	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0.1334	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	RERFLCAD2_LUNG	1	1	0.1642	FALSE	462	80	0	856	0	FALSE	ACH-000774
RERFLCAD2_LUNG	WIBG--SDSL	6	1	WIBG	5643	chr12:56297171:-	SDSL	13528	chr12:113866225:+	ONLY_REF_SPLICE	YES	65	31	0.1	0.18	0.0616	0.0103	WIBG->chr12:56295197-56326402:-,SDSL->chr12:113860042-113876081:+,serine_dehydratase_like	RERFLCAD2_LUNG	0.1	0.18	0.0719	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	3	12	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	23143	0	0	1	0.0308	0.1232	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	1	0.154	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	3	12	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	22517	261	0	0.05	0.0308	0.1232	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	0.05	0.154	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	6	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	1	1	0.0616	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TN	6	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RERFLCAD2_LUNG	1	1	0.0616	FALSE	369	2501	205	193	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TN	6	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0616	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RERFLCAD2_LUNG	1	1	0.0616	FALSE	369	2501	205	193	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-CO2	4	7	MT-ATP6	1420	chrM:8946:+	MT-CO2	4942	chrM:7846:+	INCL_NON_REF_SPLICE	YES	86	19	0.11	0.37	0.0411	0.0718	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCAD2_LUNG	0.11	0.37	0.1129	FALSE	59	21	0	114	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-RNR2	3	11	MT-ATP6	1516	chrM:9042:+	MT-RNR2	5273	chrM:2262:+	INCL_NON_REF_SPLICE	YES	8325	11594	0	0	0.0308	0.1129	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCAD2_LUNG	0	0	0.1437	FALSE	63	17	1	58	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-CO2	5	2	MT-ATP6	1118	chrM:8644:+	MT-CO2	5012	chrM:7916:+	INCL_NON_REF_SPLICE	YES	47	16	0.13	0.3	0.0513	0.0205	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCAD2_LUNG	0.13	0.3	0.0718	FALSE	59	21	0	114	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-RNR2	4	6	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	15440	11643	0	0	0.0411	0.0616	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCAD2_LUNG	0	0	0.1027	FALSE	63	17	1	58	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-RNR2	4	6	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	15390	11693	0	0	0.0411	0.0616	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCAD2_LUNG	0	0	0.1027	FALSE	63	17	1	58	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22840	100	0	0.12	0.0308	0.1026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	0.12	0.1334	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	3	10	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	23100	3	0	0.81	0.0308	0.1026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	0.81	0.1334	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	RP11-96H19.1--RP11-446N19.1	3	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.0308	0.1026	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCAD2_LUNG	0.87	1	0.1334	FALSE	275	511	55	178	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1127	chrM:8653:+	MT-RNR2	5267	chrM:2256:+	INCL_NON_REF_SPLICE	YES	14002	11806	0	0	0.0513	0.0103	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCAD2_LUNG	0	0	0.0616	FALSE	63	17	1	58	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1121	chrM:8647:+	MT-RNR2	5280	chrM:2269:+	INCL_NON_REF_SPLICE	YES	13912	11516	0	0	0.0513	0.0103	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCAD2_LUNG	0	0	0.0616	FALSE	63	17	1	58	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	5	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	19085	9	0	0.4	0.0513	0.0103	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	0.4	0.0616	FALSE	230	198	14	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	3	8	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	24053	961	0	0.01	0.0308	0.0821	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	0.01	0.1129	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	5	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	1	1	0.0513	FALSE	344	821	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	5	0	MT-ND6	1030	chrM:14644:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0513	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	1	1	0.0513	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	3	7	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	25061	0	0	1	0.0308	0.0718	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	1	0.1026	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-CO2	4	2	MT-ATP6	1121	chrM:8647:+	MT-CO2	5025	chrM:7929:+	INCL_NON_REF_SPLICE	YES	82	12	0.07	0.33	0.0411	0.0205	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCAD2_LUNG	0.07	0.33	0.0616	FALSE	59	21	0	114	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1645	chrM:11404:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	25147	100	0	0.08	0.0308	0.0616	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	0.08	0.0924	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	3	6	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	26211	100	0	0.08	0.0308	0.0616	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	0.08	0.0924	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MTATP6P1--hsa-mir-6723	4	2	MTATP6P1	1158	chr1:569233:+	hsa-mir-6723	4715	chr1:566487:+	INCL_NON_REF_SPLICE	YES	3450	0	0	1	0.0411	0.0205	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	RERFLCAD2_LUNG	0	1	0.0616	FALSE	1	3	0	3	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	3	5	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	24608	0	0	1	0.0308	0.0513	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	1	0.0821	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	4	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19209	100	0	0.05	0.0411	0.0103	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	0.05	0.0514	FALSE	230	198	14	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MTATP6P1--hsa-mir-6723	4	1	MTATP6P1	1121	chr1:569196:+	hsa-mir-6723	4698	chr1:566470:+	INCL_NON_REF_SPLICE	YES	1743	0	0	1	0.0411	0.0103	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	RERFLCAD2_LUNG	0	1	0.0514	FALSE	1	3	0	3	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MTATP6P1--hsa-mir-6723	4	1	MTATP6P1	1123	chr1:569198:+	hsa-mir-6723	5324	chr1:567096:+	INCL_NON_REF_SPLICE	YES	1818	1097	0	0	0.0411	0.0103	GTEx_FI:{Heart=[count:2=pct:0.8],Colon=[count:1=pct:0.5]},LOCAL_REARRANGEMENT:+:[1080],MTATP6P1->chr1:569076-569756:+,mitochondrially_encoded_ATP_synthase_6_pseudogene_1,hsa-mir-6723->chr1:566454-567996:+	RERFLCAD2_LUNG	0	0	0.0514	FALSE	2	7	0	3	0	FALSE	ACH-000774
RERFLCAD2_LUNG	TMED3--RP11-720L8.1	4	1	TMED3	2605	chr15:79606347:+	RP11-720L8.1	13375	chr15:37712386:-	ONLY_REF_SPLICE	YES	271	0	0.02	1	0.0411	0.0103	TMED3->chr15:79603404-79704334:+,transmembrane_p24_trafficking_protein_3,RP11-720L8.1->chr15:37657228-37783009:-	RERFLCAD2_LUNG	0.02	1	0.0514	TRUE	0	0	0	1	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-CO2	3	4	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	44	0	0.14	1	0.0308	0.0411	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCAD2_LUNG	0.14	1	0.0719	FALSE	59	21	0	114	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-CO2	3	4	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	79	0	0.08	1	0.0308	0.0411	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCAD2_LUNG	0.08	1	0.0719	FALSE	59	21	0	114	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-CO2	3	4	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	44	0	0.14	1	0.0308	0.0411	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	RERFLCAD2_LUNG	0.14	1	0.0719	FALSE	59	21	0	114	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1249	chrM:8775:+	MT-RNR2	5851	chrM:2840:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCAD2_LUNG	1	1	0.0411	FALSE	62	15	1	57	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	4	0	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	1	1	0.0411	FALSE	230	193	14	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	1	1	0.0411	FALSE	344	821	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-TA--MT-TN	4	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	RERFLCAD2_LUNG	1	1	0.0411	FALSE	369	2501	205	193	0	FALSE	ACH-000774
RERFLCAD2_LUNG	THBS1--MT-CO3	4	0	THBS1	1096	chr15:39873375:+	MT-CO3	22409	chrM:9274:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0411	0	THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	RERFLCAD2_LUNG	1	1	0.0411	FALSE	0	0	0	3	0	FALSE	ACH-000774
RERFLCAD2_LUNG	RP11-96H19.1--RP11-446N19.1	1	11	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	1	0	0.92	1	0.0103	0.1129	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCAD2_LUNG	0.92	1	0.1232	FALSE	192	492	57	212	0	FALSE	ACH-000774
RERFLCAD2_LUNG	SPINT2--YIF1B	3	3	SPINT2	2366	chr19:38755363:+	YIF1B	16141	chr19:38800283:-	ONLY_REF_SPLICE	YES	1200	54	0	0.1	0.0308	0.0308	LOCAL_INVERSION:+:-:[12499],SPINT2->chr19:38734675-38783254:+,serine_peptidase_inhibitor,_Kunitz_type,_2,YIF1B->Yip1_interacting_factor_homolog_B,_membrane_trafficking_protein,chr19:38795753-38807913:-	RERFLCAD2_LUNG	0	0.1	0.0616	FALSE	0	0	0	1	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	26035	628	0	0.01	0.0308	0.0205	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	0.01	0.0513	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	3	2	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	23446	100	0	0.05	0.0308	0.0205	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	0.05	0.0513	FALSE	231	205	14	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	RP11-96H19.1--PPHLN1	2	6	RP11-96H19.1	3839	chr12:46848924:+	PPHLN1	29187	chr12:42835117:+	ONLY_REF_SPLICE	YES	1	63	0.89	0.11	0.0205	0.0616	RP11-96H19.1->chr12:46777462-46850051:+,PPHLN1->chr12:42632249-42853517:+,periphilin_1	RERFLCAD2_LUNG	0.11	0.89	0.0821	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1123	chrM:8649:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	13909	12237	0	0	0.0308	0.0103	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCAD2_LUNG	0	0	0.0411	FALSE	63	17	1	58	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	3	1	MT-ND4	1110	chrM:10869:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	NO	11480	0	0	1	0.0308	0.0103	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	0	1	0.0411	FALSE	230	193	14	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	3	1	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0.0103	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	1	1	0.0411	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	RP11-96H19.1--RP11-446N19.1	1	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	2	0.91	0.83	0.0103	0.0924	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	RERFLCAD2_LUNG	0.83	0.91	0.1027	FALSE	467	2173	244	435	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCAD2_LUNG	1	1	0.0308	FALSE	63	17	1	58	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5387	chrM:2376:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	RERFLCAD2_LUNG	1	1	0.0308	FALSE	63	17	1	58	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ATP8	3	0	MT-ND4	1386	chrM:11145:+	MT-ATP8	5578	chrM:8565:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	RERFLCAD2_LUNG	1	1	0.0308	FALSE	231	217	16	283	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1019	chrM:10778:+	MT-ND4L	5617	chrM:10708:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	1	1	0.0308	FALSE	344	821	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1056	chrM:10815:+	MT-ND4L	5674	chrM:10765:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	1	1	0.0308	FALSE	344	821	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	RERFLCAD2_LUNG	1	1	0.0308	FALSE	344	821	44	306	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1031	chrM:14643:-	MT-TE	4590	chrM:14678:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	1	1	0.0308	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	MT-ND6--MT-TE	3	0	MT-ND6	1027	chrM:14647:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0308	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	RERFLCAD2_LUNG	1	1	0.0308	FALSE	499	1288	110	792	0	FALSE	ACH-000774
RERFLCAD2_LUNG	NRIP1--AF127936.7	2	4	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	11	0	0.35	1	0.0205	0.0411	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	RERFLCAD2_LUNG	0.35	1	0.0616	FALSE	164	806	69	479	0	FALSE	ACH-000774
RERFLCAD2_LUNG	WWOX--RP11-319G9.5	3	0	WWOX	23541	chr16:78466649:+	RP11-319G9.5	33943	chr16:79030099:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0308	0	NEIGHBORS_OVERLAP:+:+:[10385],WWOX->Oncogene{Bushman},WW_domain_containing_oxidoreductase,chr16:78133310-79246564:+,RP11-319G9.5->chr16:79028242-79038627:+	RERFLCAD2_LUNG	1	1	0.0308	FALSE	33	33	2	19	0	FALSE	ACH-000774
RERFLCAD2_LUNG	TIMM23B--LINC00843	2	2	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	1	1	0.8	0.0205	0.0205	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	RERFLCAD2_LUNG	0.8	1	0.041	TRUE	62	24	1	171	0	FALSE	ACH-000774
RERFLCAD2_LUNG	NUDT22--DPYS	2	1	NUDT22	4631	chr11:63997043:+	DPYS	10144	chr8:105463632:-	ONLY_REF_SPLICE	YES	35	0	0.08	1	0.0205	0.0103	NUDT22->chr11:63993413-63998158:+,nudix_hydrolase_22,DPYS->chr8:105342552-105479281:-,dihydropyrimidinase	RERFLCAD2_LUNG	0.08	1	0.0308	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	TSFM--OS9	1	5	TSFM	4582	chr12:58180945:+	OS9	15789	chr12:58088533:+	ONLY_REF_SPLICE	YES	853	2685	0.01	0	0.0103	0.0513	LOCAL_REARRANGEMENT:+:[61032],TSFM->Ts_translation_elongation_factor,_mitochondrial,chr12:58176372-58201854:+,OS9->chr12:58087738-58115340:+,osteosarcoma_amplified_9,_endoplasmic_reticulum_lectin	RERFLCAD2_LUNG	0	0.01	0.0616	FALSE	0	0	0	1	0	FALSE	ACH-000774
RERFLCAD2_LUNG	ABCC1--EREG	2	0	ABCC1	13852	chr16:16150152:+	EREG	48012	chr4:75248362:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	ABCC1->ATP_binding_cassette_subfamily_C_member_1,Oncogene{Bushman},chr16:16043434-16236931:+,EREG->chr4:75230860-75254468:+,epiregulin	RERFLCAD2_LUNG	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	ADAP1--SUN1	2	0	ADAP1	9672	chr7:959605:-	SUN1	48590	chr7:925693:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Esophagus=[count:10=pct:2.5],Colon=[count:8=pct:4.2],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=26;pct=0.30%;dist=Colon_-_Sigmoid=7,Esophagus_-_Muscularis=6,Esophagus_-_Gastroesophageal_Junction=5,Colon_-_Transverse=4,Artery_-_Tibial=1,Small_Intestine_-_Terminal_Ileum=1,Thyroid=1,Uterus=1},{Klijn_CCL:Pancreas=1},LOCAL_INVERSION:-:+:[1468],ADAP1->ArfGAP_with_dual_PH_domains_1,chr7:937540-995043:-,SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+	RERFLCAD2_LUNG	1	1	0.0205	TRUE	0	4	0	9	2	TRUE	ACH-000774
RERFLCAD2_LUNG	MANBA--UBE2D3	2	0	MANBA	9780	chr4:103610731:-	UBE2D3	36302	chr4:103731012:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx_FI:{Blood=[count:9=pct:5.2],Whole_Blood=[count:6=pct:4.5],Lung=[count:4=pct:2.4],Blood_Vessel=[count:1=pct:0.3]},GTEx_v2:{count=8;pct=0.09%;dist=Whole_Blood=7,Adipose_-_Visceral_(Omentum)=1},{Klijn_CCL:Head-Neck=1,Lymphoid=1,Lung=1,Other=1},LOCAL_REARRANGEMENT:-:[33389],MANBA->chr4:103552660-103682151:-,mannosidase_beta,UBE2D3->chr4:103715540-103790053:-,ubiquitin_conjugating_enzyme_E2_D3	RERFLCAD2_LUNG	1	1	0.0205	TRUE	6	5	0	8	0	FALSE	ACH-000774
RERFLCAD2_LUNG	RP11-680G10.1--GSE1	2	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	RERFLCAD2_LUNG	1	1	0.0205	TRUE	465	1949	224	605	0	FALSE	ACH-000774
RERFLCAD2_LUNG	TMEM14A--KIAA1429	2	0	TMEM14A	3325	chr6:52546712:+	KIAA1429	36934	chr8:95501088:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0205	0	TMEM14A->chr6:52535907-52551386:+,transmembrane_protein_14A,KIAA1429->KIAA1429,chr8:95499921-95565757:-	RERFLCAD2_LUNG	1	1	0.0205	TRUE	0	0	0	1	0	TRUE	ACH-000774
RERFLCAD2_LUNG	CTC-432M15.3--SAE1	1	1	CTC-432M15.3	7707	chr5:130883740:-	SAE1	48387	chr19:47673075:+	ONLY_REF_SPLICE	YES	12	181	0.14	0.01	0.0103	0.0103	CTC-432M15.3->chr5:130761584-131132676:-,SAE1->SUMO1_activating_enzyme_subunit_1,chr19:47616531-47713886:+	RERFLCAD2_LUNG	0.01	0.14	0.0206	FALSE	0	0	0	1	0	FALSE	ACH-000774
RERFLCAD2_LUNG	EFNB2--ARGLU1	1	1	EFNB2	2556	chr13:107164877:-	ARGLU1	14927	chr13:107212005:-	ONLY_REF_SPLICE	YES	22	153	0.08	0.01	0.0103	0.0103	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},LOCAL_REARRANGEMENT:-:[6559],EFNB2->chr13:107142079-107187462:-,ephrin_B2,ARGLU1->arginine_and_glutamate_rich_1,chr13:107194021-107220512:-	RERFLCAD2_LUNG	0.01	0.08	0.0206	FALSE	0	0	0	2	0	FALSE	ACH-000774
RERFLCAD2_LUNG	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	2	66	0.5	0.03	0.0103	0.0103	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	RERFLCAD2_LUNG	0.03	0.5	0.0206	FALSE	16	356	14	466	0	FALSE	ACH-000774
HCC202_BREAST	GOSR1--MBTD1	1164	432	GOSR1	10351	chr17:28819771:+	MBTD1	41636	chr17:49258055:-	ONLY_REF_SPLICE	YES	56	11	0.97	0.99	14.4203	5.3519	GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	HCC202_BREAST	0.97	0.99	19.7722	TRUE	0	0	0	2	0	TRUE	ACH-000725
HCC202_BREAST	ZNF526--CXCL17	648	16	ZNF526	1117	chr19:42724539:+	CXCL17	9341	chr19:42947212:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	8.0278	0.1982	ZNF526->chr19:42724423-42732353:+,zinc_finger_protein_526,CXCL17->C-X-C_motif_chemokine_ligand_17,chr19:42932440-42947200:-	HCC202_BREAST	1	1	8.226	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	TMEM104--SLC9A3R1	211	63	TMEM104	7995	chr17:72791771:+	SLC9A3R1	21097	chr17:72763075:+	ONLY_REF_SPLICE	YES	64	1442	0.81	0.16	2.614	0.7805	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[7130],TMEM104->Oncogene{Bushman},chr17:72772622-72835918:+,transmembrane_protein_104,SLC9A3R1->Oncogene{Bushman},SLC9A3_regulator_1,chr17:72744791-72765492:+	HCC202_BREAST	0.16	0.81	3.3945	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	FBXL20--SNF8	187	89	FBXL20	2163	chr17:37557614:-	SNF8	26270	chr17:47014486:-	ONLY_REF_SPLICE	YES	9	766	0.97	0.26	2.3167	1.1026	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,SNF8->SNF8,_ESCRT-II_complex_subunit,chr17:47006678-47022479:-	HCC202_BREAST	0.26	0.97	3.4193	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MTMR1--CABIN1	183	84	MTMR1	14931	chrX:149905920:+	CABIN1	26838	chr22:24431892:+	ONLY_REF_SPLICE	YES	191	12	0.58	0.96	2.2671	1.0406	MTMR1->chrX:149861435-149933576:+,myotubularin_related_protein_1,CABIN1->calcineurin_binding_protein_1,chr22:24407642-24574596:+	HCC202_BREAST	0.58	0.96	3.3077	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	FBXL20--SNF8	192	18	FBXL20	1351	chr17:37558426:-	SNF8	26270	chr17:47014486:-	ONLY_REF_SPLICE	YES	5	766	0.98	0.22	2.3786	0.223	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,SNF8->SNF8,_ESCRT-II_complex_subunit,chr17:47006678-47022479:-	HCC202_BREAST	0.22	0.98	2.6016	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SPOP--SRCIN1	140	23	SPOP	1302	chr17:47755295:-	SRCIN1	37195	chr17:36709091:-	ONLY_REF_SPLICE	YES	87	55	0.65	0.75	1.7344	0.2849	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-	HCC202_BREAST	0.65	0.75	2.0193	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF670--AGT	99	162	ZNF670	1218	chr1:247241896:-	AGT	17435	chr1:230850067:-	INCL_NON_REF_SPLICE	YES	26	0	0.91	1	1.2265	2.007	ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670,AGT->angiotensinogen,chr1:230838269-230850043:-	HCC202_BREAST	0.91	1	3.2335	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PDCD6--SDHA	113	58	PDCD6	2152	chr5:272887:+	SDHA	39802	chr5:254508:+	ONLY_REF_SPLICE	YES	592	446	0.22	0.28	1.3999	0.7185	LOCAL_REARRANGEMENT:+:[14921],PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,SDHA->ArcherDX_panel,FoundationOne_panel,chr5:218356-256815:+,succinate_dehydrogenase_complex_flavoprotein_subunit_A	HCC202_BREAST	0.22	0.28	2.1184	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	GOSR1--MBTD1	10	433	GOSR1	10364	chr17:28819784:+	MBTD1	41636	chr17:49258055:-	INCL_NON_REF_SPLICE	YES	60	11	0.88	0.98	0.1239	5.3643	GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	HCC202_BREAST	0.88	0.98	5.4882	TRUE	0	0	0	2	0	TRUE	ACH-000725
HCC202_BREAST	GOSR1--MBTD1	6	433	GOSR1	10355	chr17:28819775:+	MBTD1	41636	chr17:49258055:-	INCL_NON_REF_SPLICE	YES	60	11	0.88	0.98	0.0743	5.3643	GOSR1->chr17:28804380-28854610:+,golgi_SNAP_receptor_complex_member_1,MBTD1->chr17:49254786-49337524:-,mbt_domain_containing_1	HCC202_BREAST	0.88	0.98	5.4386	TRUE	0	0	0	2	0	TRUE	ACH-000725
HCC202_BREAST	PPP1CB--PLB1	86	32	PPP1CB	8102	chr2:29011675:+	PLB1	67339	chr2:28851430:+	ONLY_REF_SPLICE	YES	323	2	0.27	0.98	1.0654	0.3964	YOSHIHARA_TCGA_num_samples[BRCA:2|OV:1],{Klijn_CCL:Brain=1},PPP1CB->chr2:28974506-29025806:+,protein_phosphatase_1_catalytic_subunit_beta,PLB1->chr2:28680012-28866654:+,phospholipase_B1	HCC202_BREAST	0.27	0.98	1.4618	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	RP11-613M10.9--STARD3	86	27	RP11-613M10.9	8147	chr9:37899826:-	STARD3	20302	chr17:37809734:+	ONLY_REF_SPLICE	YES	0	377	1	0.23	1.0654	0.3345	RP11-613M10.9->chr9:37588410-38068684:-,STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+	HCC202_BREAST	0.23	1	1.3999	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	TIMM23B--LINC00843	85	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.053	0.2849	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC202_BREAST	1	1	1.3379	TRUE	508	994	45	981	0	FALSE	ACH-000725
HCC202_BREAST	ZNF670--AGT	66	82	ZNF670	1218	chr1:247241896:-	AGT	18671	chr1:230846599:-	ONLY_REF_SPLICE	YES	26	30	0.85	0.83	0.8176	1.0159	ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670,AGT->angiotensinogen,chr1:230838269-230850043:-	HCC202_BREAST	0.83	0.85	1.8335	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-TA--MT-TN	83	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0283	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC202_BREAST	1	1	1.0283	FALSE	369	2501	205	193	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	80	1	MT-ND4	1151	chrM:10910:+	MT-ATP8	5490	chrM:8477:+	INCL_NON_REF_SPLICE	NO	10149	353	0.01	0.19	0.9911	0.0124	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.01	0.19	1.0035	FALSE	230	193	14	283	0	FALSE	ACH-000725
HCC202_BREAST	NAP1L1--RP1-34H18.1	64	26	NAP1L1	1467	chr12:76478347:-	RP1-34H18.1	25770	chr12:77965639:+	ONLY_REF_SPLICE	YES	56	0	0.62	1	0.7929	0.3221	NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1,RP1-34H18.1->chr12:77718421-77966055:+	HCC202_BREAST	0.62	1	1.115	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	63	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	13283	8	0	0.89	0.7805	0.0248	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.89	0.8053	FALSE	230	193	14	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	47	24	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4	1	0.95	0.99	0.5823	0.2973	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.95	0.99	0.8796	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	MT-TA--MT-TC	48	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5947	0.0867	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC202_BREAST	1	1	0.6814	FALSE	462	80	0	856	0	FALSE	ACH-000725
HCC202_BREAST	TIMM23--RP11-464F9.1	49	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	174	6	0.23	0.9	0.607	0.0372	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC202_BREAST	0.23	0.9	0.6442	TRUE	519	3926	326	965	0	FALSE	ACH-000725
HCC202_BREAST	ZNF670--AGT	9	162	ZNF670	1218	chr1:247241896:-	AGT	17438	chr1:230850064:-	INCL_NON_REF_SPLICE	YES	26	0	0.87	1	0.1115	2.007	ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670,AGT->angiotensinogen,chr1:230838269-230850043:-	HCC202_BREAST	0.87	1	2.1185	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF256--TDRD12	42	27	ZNF256	3429	chr19:58453948:-	TDRD12	9521	chr19:33222631:+	INCL_NON_REF_SPLICE	YES	49	0	0.58	1	0.5203	0.3345	ZNF256->chr19:58452201-58459043:-,zinc_finger_protein_256,TDRD12->chr19:33210659-33320483:+,tudor_domain_containing_12	HCC202_BREAST	0.58	1	0.8548	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ND4L	5	173	MT-ND4	1109	chrM:10868:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	YES	17	1	0.91	0.99	0.0619	2.1432	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC202_BREAST	0.91	0.99	2.2051	FALSE	344	826	44	306	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ND4L	3	178	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	73	0	0.71	1	0.0372	2.2052	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC202_BREAST	0.71	1	2.2424	FALSE	344	827	44	306	0	FALSE	ACH-000725
HCC202_BREAST	FBXL20--SNF8	47	1	FBXL20	1054	chr17:37558723:-	SNF8	26270	chr17:47014486:-	INCL_NON_REF_SPLICE	YES	0	766	1	0.06	0.5823	0.0124	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,SNF8->SNF8,_ESCRT-II_complex_subunit,chr17:47006678-47022479:-	HCC202_BREAST	0.06	1	0.5947	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SLC20A2--PLAT	38	14	SLC20A2	1389	chr8:42396681:-	PLAT	30269	chr8:42050729:-	ONLY_REF_SPLICE	YES	46	0	0.53	1	0.4708	0.1734	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,PLAT->chr8:42032236-42065242:-,plasminogen_activator,_tissue_type	HCC202_BREAST	0.53	1	0.6442	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	CATSPERG--CARD8	36	9	CATSPERG	4876	chr19:38835008:+	CARD8	28131	chr19:48753104:-	ONLY_REF_SPLICE	YES	2	19	0.96	0.7	0.446	0.1115	CATSPERG->cation_channel_sperm_associated_auxiliary_subunit_gamma,chr19:38826415-38861589:+,CARD8->Oncogene{Bushman},caspase_recruitment_domain_family_member_8,chr19:48684027-48759203:-	HCC202_BREAST	0.7	0.96	0.5575	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SPAG9--TP53I13	35	11	SPAG9	2633	chr17:49156945:-	TP53I13	48737	chr17:27895296:+	ONLY_REF_SPLICE	YES	115	200	0.29	0.19	0.4336	0.1363	SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,TP53I13->chr17:27893070-27900175:+,tumor_protein_p53_inducible_protein_13	HCC202_BREAST	0.19	0.29	0.5699	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	OR51S1--TP53I11	37	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4584	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HCC202_BREAST	1	1	0.4584	TRUE	402	216	10	229	0	FALSE	ACH-000725
HCC202_BREAST	NUDT3--C6orf106	33	5	NUDT3	1411	chr6:34360041:-	C6orf106	22794	chr6:34574681:-	ONLY_REF_SPLICE	YES	61	141	0.38	0.21	0.4088	0.0619	NUDT3->chr6:34247456-34360451:-,nudix_hydrolase_3,C6orf106->chr6:34555065-34664636:-,chromosome_6_open_reading_frame_106	HCC202_BREAST	0.21	0.38	0.4707	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	TOR4A--GRIN1	30	16	TOR4A	3859	chr9:140175059:+	GRIN1	19552	chr9:140056833:+	INCL_NON_REF_SPLICE	YES	5	12	0.9	0.79	0.3717	0.1982	TOR4A->chr9:140172201-140177093:+,torsin_family_4_member_A,GRIN1->chr9:140032842-140063207:+,glutamate_ionotropic_receptor_NMDA_type_subunit_1	HCC202_BREAST	0.79	0.9	0.5699	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ND4L	3	122	MT-ND4	1114	chrM:10873:+	MT-ND4L	5607	chrM:10698:+	INCL_NON_REF_SPLICE	YES	20	0	0.86	1	0.0372	1.5114	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC202_BREAST	0.86	1	1.5486	FALSE	344	826	44	306	0	FALSE	ACH-000725
HCC202_BREAST	ZNF526--CXCL17	30	14	ZNF526	1117	chr19:42724539:+	CXCL17	9393	chr19:42947160:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3717	0.1734	ZNF526->chr19:42724423-42732353:+,zinc_finger_protein_526,CXCL17->C-X-C_motif_chemokine_ligand_17,chr19:42932440-42947200:-	HCC202_BREAST	1	1	0.5451	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ND4L	4	117	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	164	0	0.42	1	0.0496	1.4495	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC202_BREAST	0.42	1	1.4991	FALSE	344	827	44	306	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ND4L	3	117	MT-ND4	1296	chrM:11055:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	152	0	0.44	1	0.0372	1.4495	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC202_BREAST	0.44	1	1.4867	FALSE	344	827	44	306	0	FALSE	ACH-000725
HCC202_BREAST	ZNF670--AGT	3	114	ZNF670	1218	chr1:247241896:-	AGT	17558	chr1:230849944:-	INCL_NON_REF_SPLICE	YES	26	0	0.82	1	0.0372	1.4123	ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670,AGT->angiotensinogen,chr1:230838269-230850043:-	HCC202_BREAST	0.82	1	1.4495	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND6--MT-TE	29	8	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3593	0.0991	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC202_BREAST	1	1	0.4584	FALSE	499	1288	110	792	0	FALSE	ACH-000725
HCC202_BREAST	OSBPL8--NAP1L1	26	20	OSBPL8	3396	chr12:76930784:-	NAP1L1	42297	chr12:76462774:-	ONLY_REF_SPLICE	YES	14	331	0.77	0.12	0.3221	0.2478	OSBPL8->chr12:76745577-76953589:-,oxysterol_binding_protein_like_8,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	HCC202_BREAST	0.12	0.77	0.5699	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-TA--MT-TN	12	57	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1487	0.7061	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC202_BREAST	1	1	0.8548	FALSE	369	2501	205	193	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND6--MT-TE	23	8	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2849	0.0991	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC202_BREAST	1	1	0.384	FALSE	499	1288	110	792	0	FALSE	ACH-000725
HCC202_BREAST	MT-TA--MT-TN	25	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3097	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC202_BREAST	1	1	0.3097	FALSE	369	2501	205	193	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	22	9	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3602	10	0.01	0.76	0.2725	0.1115	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.01	0.76	0.384	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	SPOP--SRCIN1	15	36	SPOP	6042	chr17:47714121:-	SRCIN1	37195	chr17:36709091:-	ONLY_REF_SPLICE	YES	168	55	0.23	0.48	0.1858	0.446	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-	HCC202_BREAST	0.23	0.48	0.6318	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	23	3	MT-ND4	1386	chrM:11145:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	18988	658	0	0.04	0.2849	0.0372	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.04	0.3221	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ND4L	12	47	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	12717	0	0	1	0.1487	0.5823	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC202_BREAST	0	1	0.731	FALSE	328	800	43	304	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	23	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13233	10	0	0.71	0.2849	0.0248	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.71	0.3097	FALSE	230	198	14	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-TA--MT-TN	19	13	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2354	0.1611	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC202_BREAST	1	1	0.3965	FALSE	369	2501	205	193	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	20	8	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17126	10	0	0.74	0.2478	0.0991	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.74	0.3469	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	ZNF670--AGT	18	15	ZNF670	1218	chr1:247241896:-	AGT	20530	chr1:230841946:-	ONLY_REF_SPLICE	YES	26	97	0.56	0.25	0.223	0.1858	ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670,AGT->angiotensinogen,chr1:230838269-230850043:-	HCC202_BREAST	0.25	0.56	0.4088	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PIK3CB--NVL	17	16	PIK3CB	15783	chr3:138423285:-	NVL	62572	chr1:224415372:-	ONLY_REF_SPLICE	YES	51	129	0.39	0.2	0.2106	0.1982	{Klijn_CCL:Breast=1},PIK3CB->ArcherDX_panel,FoundationOne_panel,chr3:138372860-138553780:-,phosphatidylinositol-4,5-bisphosphate_3-kinase_catalytic_subunit_beta,NVL->chr1:224415036-224518089:-,nuclear_VCP-like	HCC202_BREAST	0.2	0.39	0.4088	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PHF8--NEBL	19	7	PHF8	12278	chrX:54037555:-	NEBL	43026	chr10:21188379:-	INCL_NON_REF_SPLICE	YES	178	57	0.13	0.31	0.2354	0.0867	PHF8->PHD_finger_protein_8,chrX:53963109-54075391:-,NEBL->chr10:21068902-21463116:-,nebulette	HCC202_BREAST	0.13	0.31	0.3221	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PCMTD1--RP11-317N12.1	18	10	PCMTD1	1246	chr8:52811490:-	RP11-317N12.1	24941	chr8:33865374:+	ONLY_REF_SPLICE	YES	70	0	0.29	1	0.223	0.1239	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,RP11-317N12.1->chr8:33462374-33896526:+	HCC202_BREAST	0.29	1	0.3469	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	19	1	MT-ND4	1151	chrM:10910:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	10149	1	0	0.95	0.2354	0.0124	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.95	0.2478	FALSE	230	193	14	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	19	1	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	5644	4	0	0.83	0.2354	0.0124	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.83	0.2478	FALSE	41	30	6	102	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	16	13	MT-ND5	2368	chrM:13704:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	2692	2	0.01	0.94	0.1982	0.1611	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.01	0.94	0.3593	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND6--MT-TE	15	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1858	0.2106	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC202_BREAST	0.97	1	0.3964	FALSE	499	1288	110	792	0	FALSE	ACH-000725
HCC202_BREAST	GBF1--MRC2	17	8	GBF1	3423	chr10:104019873:+	MRC2	33016	chr17:60741909:+	ONLY_REF_SPLICE	YES	57	0	0.3	1	0.2106	0.0991	GBF1->chr10:104005289-104142656:+,golgi_brefeldin_A_resistant_guanine_nucleotide_exchange_factor_1,MRC2->chr17:60704762-60770958:+,mannose_receptor_C_type_2	HCC202_BREAST	0.3	1	0.3097	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	12	25	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.1487	0.3097	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.97	1	0.4584	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	FYCO1--HRAS	15	12	FYCO1	17756	chr3:45996741:-	HRAS	32781	chr11:534375:-	ONLY_REF_SPLICE	YES	21	12	0.56	0.69	0.1858	0.1487	{Klijn_CCL:Breast=1},FYCO1->FYVE_and_coiled-coil_domain_containing_1,chr3:45959396-46037316:-,HRAS->ArcherDX_panel,FoundationOne_panel,Harvey_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr11:532242-537287:-	HCC202_BREAST	0.56	0.69	0.3345	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	16	6	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5920	108	0	0.17	0.1982	0.0743	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.17	0.2725	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	PDCD6--SDHA	3	58	PDCD6	2152	chr5:272887:+	SDHA	39767	chr5:254473:+	ONLY_REF_SPLICE	YES	592	451	0.09	0.12	0.0372	0.7185	LOCAL_REARRANGEMENT:+:[14921],PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,SDHA->ArcherDX_panel,FoundationOne_panel,chr5:218356-256815:+,succinate_dehydrogenase_complex_flavoprotein_subunit_A	HCC202_BREAST	0.09	0.12	0.7557	TRUE	0	0	0	1	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	16	4	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	18624	1	0	0.95	0.1982	0.0496	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.95	0.2478	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-CO1--MT-ND1	16	3	MT-CO1	1699	chrM:6602:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	23949	7353	0	0	0.1982	0.0372	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC202_BREAST	0	0	0.2354	FALSE	39	30	6	19	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	15	6	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17884	1	0	0.95	0.1858	0.0743	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.95	0.2601	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	PDCD6--SDHA	2	58	PDCD6	5721	chr5:304336:+	SDHA	32592	chr5:236543:+	ONLY_REF_SPLICE	YES	494	321	0.11	0.16	0.0248	0.7185	LOCAL_REARRANGEMENT:+:[14921],PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,SDHA->ArcherDX_panel,FoundationOne_panel,chr5:218356-256815:+,succinate_dehydrogenase_complex_flavoprotein_subunit_A	HCC202_BREAST	0.11	0.16	0.7433	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	TMEM104--SLC9A3R1	6	42	TMEM104	7995	chr17:72791771:+	SLC9A3R1	22138	chr17:72764286:+	ONLY_REF_SPLICE	YES	64	1658	0.43	0.03	0.0743	0.5203	{Klijn_CCL:Ovary=1},LOCAL_REARRANGEMENT:+:[7130],TMEM104->Oncogene{Bushman},chr17:72772622-72835918:+,transmembrane_protein_104,SLC9A3R1->Oncogene{Bushman},SLC9A3_regulator_1,chr17:72744791-72765492:+	HCC202_BREAST	0.03	0.43	0.5946	TRUE	0	0	0	1	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	14	9	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16291	108	0	0.18	0.1734	0.1115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.18	0.2849	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	HSP90AB1--MT-RNR2	15	4	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3074	0	0.01	1	0.1858	0.0496	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC202_BREAST	0.01	1	0.2354	FALSE	13	9	0	364	0	FALSE	ACH-000725
HCC202_BREAST	HSP90AB1--MT-RNR2	15	4	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3079	0	0.01	1	0.1858	0.0496	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HCC202_BREAST	0.01	1	0.2354	FALSE	13	9	0	364	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	13	11	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	7923	658	0	0.04	0.1611	0.1363	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.04	0.2974	FALSE	231	215	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ND4L	4	47	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	1232	0	0.04	1	0.0496	0.5823	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC202_BREAST	0.04	1	0.6319	FALSE	344	827	44	306	0	FALSE	ACH-000725
HCC202_BREAST	MT-TA--MT-TN	3	51	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0.6318	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC202_BREAST	1	1	0.669	FALSE	369	2501	205	193	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	15	1	MT-ND4	1152	chrM:10911:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	NO	10161	4	0	0.8	0.1858	0.0124	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.8	0.1982	FALSE	230	193	14	283	0	FALSE	ACH-000725
HCC202_BREAST	PDCD6--SDHA	11	17	PDCD6	2152	chr5:272887:+	SDHA	40916	chr5:256449:+	ONLY_REF_SPLICE	YES	592	311	0.05	0.08	0.1363	0.2106	LOCAL_REARRANGEMENT:+:[14921],PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,SDHA->ArcherDX_panel,FoundationOne_panel,chr5:218356-256815:+,succinate_dehydrogenase_complex_flavoprotein_subunit_A	HCC202_BREAST	0.05	0.08	0.3469	TRUE	0	0	0	1	0	FALSE	ACH-000725
HCC202_BREAST	SPOP--SRCIN1	9	25	SPOP	2424	chr17:47753257:-	SRCIN1	37195	chr17:36709091:-	ONLY_REF_SPLICE	YES	149	55	0.19	0.38	0.1115	0.3097	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-	HCC202_BREAST	0.19	0.38	0.4212	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PDCD6--SDHA	4	44	PDCD6	1201	chr5:271936:+	SDHA	39802	chr5:254508:+	ONLY_REF_SPLICE	YES	688	446	0.07	0.1	0.0496	0.5451	LOCAL_REARRANGEMENT:+:[14921],PDCD6->Oncogene{Bushman},chr5:271736-353971:+,programmed_cell_death_6,SDHA->ArcherDX_panel,FoundationOne_panel,chr5:218356-256815:+,succinate_dehydrogenase_complex_flavoprotein_subunit_A	HCC202_BREAST	0.07	0.1	0.5947	TRUE	0	0	0	1	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	14	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13309	108	0	0.13	0.1734	0.0248	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.13	0.1982	FALSE	230	198	14	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ND4L	3	46	MT-ND4	1195	chrM:10954:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	67	0	0.42	1	0.0372	0.5699	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC202_BREAST	0.42	1	0.6071	FALSE	344	826	44	306	0	FALSE	ACH-000725
HCC202_BREAST	MT-TA--MT-TN	7	30	MT-TA	1054	chrM:5602:-	MT-TN	4092	chrM:5707:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0867	0.3717	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC202_BREAST	1	1	0.4584	FALSE	369	2501	205	193	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ND4L	6	30	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	1400	0	0.03	1	0.0743	0.3717	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC202_BREAST	0.03	1	0.446	FALSE	344	827	44	306	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	7	26	MT-ND5	2745	chrM:14081:+	MT-ATP8	5845	chrM:8398:+	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0867	0.3221	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.94	1	0.4088	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	RP11-96H19.1--RP11-446N19.1	12	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	5	2	0.77	0.89	0.1487	0.0619	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC202_BREAST	0.77	0.89	0.2106	FALSE	515	4851	409	746	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	10	12	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	2703	108	0.01	0.17	0.1239	0.1487	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.01	0.17	0.2726	FALSE	216	209	16	281	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	12	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15797	10	0	0.6	0.1487	0.0372	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.6	0.1859	FALSE	231	205	14	283	0	FALSE	ACH-000725
HCC202_BREAST	SPOP--SRCIN1	6	27	SPOP	3476	chr17:47745389:-	SRCIN1	37195	chr17:36709091:-	ONLY_REF_SPLICE	YES	154	55	0.18	0.38	0.0743	0.3345	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-	HCC202_BREAST	0.18	0.38	0.4088	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	HECTD4--TMEM116	11	6	HECTD4	12575	chr12:112711459:-	TMEM116	89787	chr12:112381173:-	ONLY_REF_SPLICE	YES	7	43	0.71	0.28	0.1363	0.0743	HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,TMEM116->chr12:112369086-112450970:-,transmembrane_protein_116	HCC202_BREAST	0.28	0.71	0.2106	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	NOL12--GGA1	12	0	NOL12	22656	chr22:38147835:+	GGA1	54712	chr22:38026910:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1487	0	LOCAL_REARRANGEMENT:+:[48109],NOL12->chr22:38077680-38170137:+,nucleolar_protein_12,GGA1->Oncogene{Bushman},chr22:38004481-38029571:+,golgi-associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_1	HCC202_BREAST	1	1	0.1487	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF526--CXCL17	11	4	ZNF526	1117	chr19:42724539:+	CXCL17	10648	chr19:42938008:-	ONLY_REF_SPLICE	YES	0	104	1	0.13	0.1363	0.0496	ZNF526->chr19:42724423-42732353:+,zinc_finger_protein_526,CXCL17->C-X-C_motif_chemokine_ligand_17,chr19:42932440-42947200:-	HCC202_BREAST	0.13	1	0.1859	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-TA--MT-TC	10	7	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1239	0.0867	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC202_BREAST	1	1	0.2106	FALSE	462	80	0	856	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	9	10	MT-ND5	2687	chrM:14023:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	743	10	0.02	0.66	0.1115	0.1239	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.02	0.66	0.2354	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	ZNF526--CXCL17	9	10	ZNF526	1117	chr19:42724539:+	CXCL17	9497	chr19:42947056:-	INCL_NON_REF_SPLICE	YES	0	37	1	0.34	0.1115	0.1239	ZNF526->chr19:42724423-42732353:+,zinc_finger_protein_526,CXCL17->C-X-C_motif_chemokine_ligand_17,chr19:42932440-42947200:-	HCC202_BREAST	0.34	1	0.2354	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF526--CXCL17	7	17	ZNF526	1365	chr19:42724787:+	CXCL17	9341	chr19:42947212:-	INCL_NON_REF_SPLICE	YES	2	0	0.92	1	0.0867	0.2106	ZNF526->chr19:42724423-42732353:+,zinc_finger_protein_526,CXCL17->C-X-C_motif_chemokine_ligand_17,chr19:42932440-42947200:-	HCC202_BREAST	0.92	1	0.2973	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	7	16	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.96	0.0867	0.1982	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.96	1	0.2849	FALSE	209	205	15	279	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND6--MT-TE	6	20	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0.2478	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC202_BREAST	1	1	0.3221	FALSE	499	1288	110	792	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	9	7	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	17043	1116	0	0.01	0.1115	0.0867	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.01	0.1982	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	10	3	MT-ND4	1299	chrM:11058:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	17241	108	0	0.11	0.1239	0.0372	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.11	0.1611	FALSE	231	205	14	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	8	11	MT-ND5	2518	chrM:13854:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	YES	2966	8	0.01	0.7	0.0991	0.1363	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.01	0.7	0.2354	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	OSBPL8--NAP1L1	6	19	OSBPL8	3390	chr12:76930790:-	NAP1L1	42297	chr12:76462774:-	INCL_NON_REF_SPLICE	YES	14	331	0.64	0.07	0.0743	0.2354	OSBPL8->chr12:76745577-76953589:-,oxysterol_binding_protein_like_8,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	HCC202_BREAST	0.07	0.64	0.3097	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	4	26	MT-ND5	2792	chrM:14128:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0.3221	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	1	1	0.3717	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ND4L	4	25	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	65	0	0.31	1	0.0496	0.3097	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC202_BREAST	0.31	1	0.3593	FALSE	344	826	44	306	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ND4L	3	29	MT-ND4	1281	chrM:11040:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	130	0	0.2	1	0.0372	0.3593	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC202_BREAST	0.2	1	0.3965	FALSE	344	827	44	306	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	29	MT-ND5	2778	chrM:14114:+	MT-ATP8	5840	chrM:8393:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0.3593	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	1	1	0.3965	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	8	8	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	16253	980	0	0.02	0.0991	0.0991	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.02	0.1982	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ND4L	6	16	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	149	0	0.13	1	0.0743	0.1982	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC202_BREAST	0.13	1	0.2725	FALSE	344	827	44	306	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	28	MT-ND5	2730	chrM:14066:+	MT-ATP8	5817	chrM:8370:+	INCL_NON_REF_SPLICE	YES	4	0	0.89	1	0.0372	0.3469	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.89	1	0.3841	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	SPOP--SRCIN1	1	36	SPOP	6604	chr17:47713559:-	SRCIN1	37195	chr17:36709091:-	ONLY_REF_SPLICE	YES	175	55	0.17	0.4	0.0124	0.446	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-	HCC202_BREAST	0.17	0.4	0.4584	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	7	11	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	16767	1	0	0.95	0.0867	0.1363	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.95	0.223	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	9	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13283	10	0	0.52	0.1115	0.0248	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.52	0.1363	FALSE	230	193	14	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	8	6	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	17820	1	0	0.93	0.0991	0.0743	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.93	0.1734	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ND4L	9	2	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1115	0.0248	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC202_BREAST	1	1	0.1363	FALSE	344	821	44	306	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	26	MT-ND5	2794	chrM:14130:+	MT-ATP8	5871	chrM:8424:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.0372	0.3221	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.97	1	0.3593	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	26	MT-ND5	2813	chrM:14149:+	MT-ATP8	5870	chrM:8423:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.97	0.0372	0.3221	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.97	1	0.3593	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	PCMTD1--RP11-317N12.1	5	18	PCMTD1	3791	chr8:52773405:-	RP11-317N12.1	24941	chr8:33865374:+	ONLY_REF_SPLICE	YES	60	0	0.28	1	0.0619	0.223	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,RP11-317N12.1->chr8:33462374-33896526:+	HCC202_BREAST	0.28	1	0.2849	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	4	21	MT-ND5	2749	chrM:14085:+	MT-ATP8	5896	chrM:8449:+	INCL_NON_REF_SPLICE	YES	2	1	0.93	0.96	0.0496	0.2602	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.93	0.96	0.3098	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	OSBPL8--NAP1L1	5	17	OSBPL8	2443	chr12:76931737:-	NAP1L1	42297	chr12:76462774:-	ONLY_REF_SPLICE	YES	14	331	0.61	0.06	0.0619	0.2106	OSBPL8->chr12:76745577-76953589:-,oxysterol_binding_protein_like_8,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	HCC202_BREAST	0.06	0.61	0.2725	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	RP11-96H19.1--RP11-446N19.1	7	9	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	2	1	0.89	0.0867	0.1115	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC202_BREAST	0.89	1	0.1982	FALSE	467	2173	244	435	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	8	4	MT-ND4	1447	chrM:11206:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	18363	8	0	0.6	0.0991	0.0496	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.6	0.1487	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	5	16	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	33	1	0.39	0.95	0.0619	0.1982	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.39	0.95	0.2601	FALSE	213	207	15	279	0	FALSE	ACH-000725
HCC202_BREAST	MT-TA--MT-TN	9	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1115	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC202_BREAST	1	1	0.1115	FALSE	369	2501	205	193	0	FALSE	ACH-000725
HCC202_BREAST	FYCO1--HRAS	7	7	FYCO1	17756	chr3:45996741:-	HRAS	33212	chr11:533944:-	ONLY_REF_SPLICE	YES	21	88	0.4	0.14	0.0867	0.0867	{Klijn_CCL:Breast=1},FYCO1->FYVE_and_coiled-coil_domain_containing_1,chr3:45959396-46037316:-,HRAS->ArcherDX_panel,FoundationOne_panel,Harvey_rat_sarcoma_viral_oncogene_homolog,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr11:532242-537287:-	HCC202_BREAST	0.14	0.4	0.1734	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-CO1--MT-ND1	8	3	MT-CO1	1653	chrM:6556:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	24500	7353	0	0	0.0991	0.0372	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC202_BREAST	0	0	0.1363	FALSE	39	30	6	19	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	7	7	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	18328	0	0	1	0.0867	0.0867	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	1	0.1734	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	23	MT-ND5	2617	chrM:13953:+	MT-ATP8	5823	chrM:8376:+	INCL_NON_REF_SPLICE	YES	2417	0	0.01	1	0.0372	0.2849	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.01	1	0.3221	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	23	MT-ND5	2644	chrM:13980:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	1839	0	0.01	1	0.0372	0.2849	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.01	1	0.3221	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	SPAG9--MLLT10P1	8	3	SPAG9	1512	chr17:49197715:-	MLLT10P1	46517	chr20:29638054:-	INCL_NON_REF_SPLICE	YES	187	0	0.06	1	0.0991	0.0372	SPAG9->chr17:49039535-49198226:-,sperm_associated_antigen_9,MLLT10P1->chr20:29637799-29638060:-,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10_pseudogene_1	HCC202_BREAST	0.06	1	0.1363	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	8	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13233	108	0	0.08	0.0991	0.0248	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.08	0.1239	FALSE	230	198	14	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-TA--MT-TN	3	22	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0.2725	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC202_BREAST	1	1	0.3097	FALSE	369	2501	205	193	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND3--MT-CO2	8	1	MT-ND3	1249	chrM:10307:+	MT-CO2	4499	chrM:7738:+	INCL_NON_REF_SPLICE	YES	66	8298	0.12	0	0.0991	0.0124	LOCAL_REARRANGEMENT:+:[1790],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC202_BREAST	0	0.12	0.1115	FALSE	0	23	1	2	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	6	9	MT-ND4	1903	chrM:11662:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	16240	272	0	0.05	0.0743	0.1115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.05	0.1858	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	ANKRD13B--PCTP	7	4	ANKRD13B	2362	chr17:27920753:+	PCTP	15685	chr17:53844696:+	ONLY_REF_SPLICE	YES	14	7	0.44	0.61	0.0867	0.0496	ANKRD13B->ankyrin_repeat_domain_13B,chr17:27916787-27941779:+,PCTP->chr17:53828340-53920191:+,phosphatidylcholine_transfer_protein	HCC202_BREAST	0.44	0.61	0.1363	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	4	16	MT-ND4	2240	chrM:11999:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	3429	1	0.01	0.95	0.0496	0.1982	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.01	0.95	0.2478	FALSE	216	209	16	281	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	5	12	MT-ND4	2217	chrM:11976:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5174	108	0	0.14	0.0619	0.1487	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.14	0.2106	FALSE	218	210	16	281	0	FALSE	ACH-000725
HCC202_BREAST	MT-TA--MT-TC	8	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0991	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC202_BREAST	1	1	0.0991	FALSE	462	80	0	856	0	FALSE	ACH-000725
HCC202_BREAST	MT-TA--MT-TN	8	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0991	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC202_BREAST	1	1	0.0991	FALSE	369	2501	205	193	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	19	MT-ND5	2221	chrM:13557:+	MT-ATP8	5839	chrM:8392:+	INCL_NON_REF_SPLICE	YES	3666	0	0.01	1	0.0372	0.2354	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.01	1	0.2726	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	5	11	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	5792	1	0	0.94	0.0619	0.1363	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.94	0.1982	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	6	6	MT-ND4	1566	chrM:11325:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	18969	8	0	0.6	0.0743	0.0743	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.6	0.1486	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	7	2	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	13652	1	0	0.9	0.0867	0.0248	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.9	0.1115	FALSE	231	204	14	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	18	MT-ND4	1997	chrM:11756:+	MT-ATP8	5394	chrM:8381:+	INCL_NON_REF_SPLICE	YES	15828	0	0	1	0.0372	0.223	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	1	0.2602	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	18	MT-ND5	2243	chrM:13579:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	NO	3602	1	0.01	0.95	0.0372	0.223	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.01	0.95	0.2602	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	5	10	MT-ND5	2718	chrM:14054:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8	108	0.65	0.12	0.0619	0.1239	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.12	0.65	0.1858	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	18	MT-ND5	2394	chrM:13730:+	MT-ATP8	5872	chrM:8425:+	INCL_NON_REF_SPLICE	NO	2560	1	0.01	0.95	0.0372	0.223	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.01	0.95	0.2602	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	7	1	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	17887	1736	0	0	0.0867	0.0124	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0	0.0991	FALSE	231	205	14	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	4	13	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	17142	1	0	0.94	0.0496	0.1611	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.94	0.2107	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	17	MT-ND4	2196	chrM:11955:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	6914	0	0	1	0.0372	0.2106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	1	0.2478	FALSE	231	215	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	17	MT-ND5	2533	chrM:13869:+	MT-ATP8	5891	chrM:8444:+	INCL_NON_REF_SPLICE	YES	3155	1	0.01	0.95	0.0372	0.2106	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.01	0.95	0.2478	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	17	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	2678	1	0.01	0.95	0.0372	0.2106	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0.01	0.95	0.2478	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	HIST2H2BC--OTUD7B	6	4	HIST2H2BC	1360	chr1:149821980:-	OTUD7B	5810	chr1:149949511:-	INCL_NON_REF_SPLICE	YES	79	27	0.11	0.27	0.0743	0.0496	LOCAL_REARRANGEMENT:-:[87366],HIST2H2BC->chr1:149821760-149822339:-,histone_cluster_2,_H2bc_(pseudogene),OTUD7B->OTU_deubiquitinase_7B,chr1:149909705-149982625:-	HCC202_BREAST	0.11	0.27	0.1239	TRUE	0	0	0	2	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	4	12	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	17062	1	0	0.94	0.0496	0.1487	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.94	0.1983	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	4	11	MT-ND4	1843	chrM:11602:+	MT-ATP8	5455	chrM:8442:+	INCL_NON_REF_SPLICE	YES	16496	1	0	0.94	0.0496	0.1363	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.94	0.1859	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	5	7	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	17004	1736	0	0.01	0.0619	0.0867	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.01	0.1486	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	RAB35--COQ5	6	3	RAB35	4315	chr12:120541630:-	COQ5	20029	chr12:120947926:-	ONLY_REF_SPLICE	YES	128	160	0.07	0.05	0.0743	0.0372	RAB35->RAB35,_member_RAS_oncogene_family,chr12:120532899-120555306:-,COQ5->chr12:120941077-120972237:-,coenzyme_Q5,_methyltransferase	HCC202_BREAST	0.05	0.07	0.1115	TRUE	0	0	0	1	0	FALSE	ACH-000725
HCC202_BREAST	MT-CO1--MT-ND1	6	2	MT-CO1	1324	chrM:6227:+	MT-ND1	5558	chrM:3322:+	INCL_NON_REF_SPLICE	YES	19703	0	0	1	0.0743	0.0248	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC202_BREAST	0	1	0.0991	FALSE	39	29	6	19	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	4	10	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	16544	0	0	1	0.0496	0.1239	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	1	0.1735	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	SLC20A2--PLAT	3	14	SLC20A2	7525	chr8:42358549:-	PLAT	30269	chr8:42050729:-	ONLY_REF_SPLICE	YES	39	0	0.3	1	0.0372	0.1734	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,PLAT->chr8:42032236-42065242:-,plasminogen_activator,_tissue_type	HCC202_BREAST	0.3	1	0.2106	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	HECTD4--TMEM116	6	1	HECTD4	12575	chr12:112711459:-	TMEM116	89845	chr12:112381115:-	INCL_NON_REF_SPLICE	YES	7	42	0.5	0.14	0.0743	0.0124	HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,TMEM116->chr12:112369086-112450970:-,transmembrane_protein_116	HCC202_BREAST	0.14	0.5	0.0867	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	6	1	MT-ND4	1117	chrM:10876:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	8270	658	0	0.01	0.0743	0.0124	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.01	0.0867	FALSE	230	193	14	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	13	MT-ND4	2232	chrM:11991:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	4086	4	0	0.8	0.0372	0.1611	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.8	0.1983	FALSE	216	209	16	281	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	13	MT-ND5	2181	chrM:13517:+	MT-ATP8	5878	chrM:8431:+	INCL_NON_REF_SPLICE	YES	4341	1	0	0.94	0.0372	0.1611	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.94	0.1983	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	SPOP--SRCIN1	4	9	SPOP	1302	chr17:47755295:-	SRCIN1	37456	chr17:36708830:-	ONLY_REF_SPLICE	YES	87	78	0.13	0.14	0.0496	0.1115	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,SRCIN1->SRC_kinase_signaling_inhibitor_1,chr17:36686251-36762183:-	HCC202_BREAST	0.13	0.14	0.1611	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND3--MT-CO2	6	0	MT-ND3	1059	chrM:10117:+	MT-CO2	4502	chrM:7741:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	LOCAL_REARRANGEMENT:+:[1790],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HCC202_BREAST	1	1	0.0743	FALSE	0	23	1	2	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	5	4	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	17207	1	0	0.9	0.0619	0.0496	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.9	0.1115	FALSE	231	205	14	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	6	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5571	chrM:8558:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	1	1	0.0743	FALSE	231	204	14	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	5	4	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	17240	1	0	0.9	0.0619	0.0496	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.9	0.1115	FALSE	231	205	14	283	0	FALSE	ACH-000725
HCC202_BREAST	PCMTD1--RP11-317N12.1	6	0	PCMTD1	1246	chr8:52811490:-	RP11-317N12.1	26041	chr8:33892404:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0743	0	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,RP11-317N12.1->chr8:33462374-33896526:+	HCC202_BREAST	1	1	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF670--AGT	6	0	ZNF670	1086	chr1:247242028:-	AGT	17435	chr1:230850067:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0743	0	ZNF670->chr1:247108849-247242113:-,zinc_finger_protein_670,AGT->angiotensinogen,chr1:230838269-230850043:-	HCC202_BREAST	1	1	0.0743	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	FBXL20--SNF8	4	7	FBXL20	2163	chr17:37557614:-	SNF8	31551	chr17:47009079:-	ONLY_REF_SPLICE	YES	9	1031	0.55	0.01	0.0496	0.0867	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,SNF8->SNF8,_ESCRT-II_complex_subunit,chr17:47006678-47022479:-	HCC202_BREAST	0.01	0.55	0.1363	TRUE	0	0	0	1	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	11	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15308	108	0	0.11	0.0372	0.1363	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.11	0.1735	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	4	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5500	chrM:8487:+	INCL_NON_REF_SPLICE	NO	17126	1041	0	0.01	0.0496	0.0867	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.01	0.1363	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	4	7	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	17719	1	0	0.92	0.0496	0.0867	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.92	0.1363	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	11	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	16644	1	0	0.93	0.0372	0.1363	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.93	0.1735	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	10	MT-ND4	1747	chrM:11506:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	16613	1	0	0.93	0.0372	0.1239	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.93	0.1611	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	9	MT-ND4	1896	chrM:11655:+	MT-ATP8	5497	chrM:8484:+	INCL_NON_REF_SPLICE	NO	16545	848	0	0.01	0.0372	0.1115	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.01	0.1487	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	4	5	MT-ND4	1533	chrM:11292:+	MT-ATP8	5479	chrM:8466:+	INCL_NON_REF_SPLICE	YES	19893	9	0	0.5	0.0496	0.0619	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.5	0.1115	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	4	5	MT-ND5	2533	chrM:13869:+	MT-ATP8	5939	chrM:8492:+	INCL_NON_REF_SPLICE	YES	3155	1332	0	0.01	0.0496	0.0619	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.01	0.1115	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	RP11-123O10.4--GRIP1	5	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0619	0.0124	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC202_BREAST	1	1	0.0743	FALSE	416	2512	207	587	0	FALSE	ACH-000725
HCC202_BREAST	RP11-680G10.1--GSE1	5	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	26	1	0.19	0.0619	0.0124	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC202_BREAST	0.19	1	0.0743	TRUE	458	1351	185	561	0	FALSE	ACH-000725
HCC202_BREAST	C15orf57--CBX3	4	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	35	53	0.19	0.13	0.0496	0.0496	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC202_BREAST	0.13	0.19	0.0992	TRUE	267	562	48	632	0	FALSE	ACH-000725
HCC202_BREAST	C15orf57--CBX3	4	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	36	51	0.18	0.14	0.0496	0.0496	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HCC202_BREAST	0.14	0.18	0.0992	TRUE	267	562	48	632	0	FALSE	ACH-000725
HCC202_BREAST	LL0XNC01-237H1.2--WDR44	5	0	LL0XNC01-237H1.2	5399	chrX:102160665:+	WDR44	25009	chrX:117575331:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	LL0XNC01-237H1.2->chrX:102139342-102161086:+,WDR44->WD_repeat_domain_44,chrX:117480036-117583924:+	HCC202_BREAST	1	1	0.0619	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	4	4	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	19504	916	0	0.01	0.0496	0.0496	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.01	0.0992	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	8	MT-ND4	1754	chrM:11513:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	16767	152	0	0.07	0.0372	0.0991	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.07	0.1363	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	4	4	MT-ND5	1609	chrM:12945:+	MT-ATP8	5903	chrM:8456:+	INCL_NON_REF_SPLICE	YES	4333	1	0	0.89	0.0496	0.0496	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.89	0.0992	FALSE	42	36	7	104	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND6--MT-TE	5	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC202_BREAST	1	1	0.0619	FALSE	499	1288	110	792	0	FALSE	ACH-000725
HCC202_BREAST	MT-TA--MT-TN	5	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0619	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	HCC202_BREAST	1	1	0.0619	FALSE	369	2501	205	193	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	7	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	18315	1	0	0.91	0.0372	0.0867	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.91	0.1239	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	7	MT-ND4	1544	chrM:11303:+	MT-ATP8	5455	chrM:8442:+	INCL_NON_REF_SPLICE	YES	19603	1	0	0.91	0.0372	0.0867	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.91	0.1239	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	7	MT-ND5	2150	chrM:13486:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5181	108	0	0.08	0.0372	0.0867	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.08	0.1239	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	7	MT-ND5	1828	chrM:13164:+	MT-ATP8	5867	chrM:8420:+	INCL_NON_REF_SPLICE	YES	3771	1	0	0.91	0.0372	0.0867	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.91	0.1239	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	7	MT-ND5	1770	chrM:13106:+	MT-ATP8	5861	chrM:8414:+	INCL_NON_REF_SPLICE	YES	3383	1	0	0.91	0.0372	0.0867	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.91	0.1239	FALSE	43	37	8	105	0	FALSE	ACH-000725
HCC202_BREAST	OSBPL8--NAP1L1	4	3	OSBPL8	1413	chr12:76953177:-	NAP1L1	45722	chr12:76454059:-	ONLY_REF_SPLICE	YES	11	450	0.39	0.02	0.0496	0.0372	OSBPL8->chr12:76745577-76953589:-,oxysterol_binding_protein_like_8,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	HCC202_BREAST	0.02	0.39	0.0868	TRUE	0	0	0	1	0	FALSE	ACH-000725
HCC202_BREAST	OSBPL8--NAP1L1	2	11	OSBPL8	1413	chr12:76953177:-	NAP1L1	43811	chr12:76461253:-	ONLY_REF_SPLICE	YES	11	442	0.54	0.03	0.0248	0.1363	OSBPL8->chr12:76745577-76953589:-,oxysterol_binding_protein_like_8,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	HCC202_BREAST	0.03	0.54	0.1611	TRUE	0	0	0	1	0	FALSE	ACH-000725
HCC202_BREAST	PHF8--NEBL	3	7	PHF8	12278	chrX:54037555:-	NEBL	43031	chr10:21188374:-	INCL_NON_REF_SPLICE	YES	178	57	0.05	0.15	0.0372	0.0867	PHF8->PHD_finger_protein_8,chrX:53963109-54075391:-,NEBL->chr10:21068902-21463116:-,nebulette	HCC202_BREAST	0.05	0.15	0.1239	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZFP90--NFATC3	3	7	ZFP90	2603	chr16:68567758:+	NFATC3	30780	chr16:68215378:+	ONLY_REF_SPLICE	YES	25	32	0.29	0.24	0.0372	0.0867	ZFP90->ZFP90_zinc_finger_protein,chr16:68563993-68609975:+,NFATC3->Oncogene{Bushman},chr16:68118654-68263162:+,nuclear_factor_of_activated_T-cells_3	HCC202_BREAST	0.24	0.29	0.1239	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	6	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	19072	108	0	0.08	0.0372	0.0743	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.08	0.1115	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	4	2	MT-ND4	1572	chrM:11331:+	MT-ATP8	5534	chrM:8521:+	INCL_NON_REF_SPLICE	YES	18551	2072	0	0	0.0496	0.0248	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0	0.0744	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	6	MT-ND5	1554	chrM:12890:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4602	1	0	0.9	0.0372	0.0743	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.9	0.1115	FALSE	42	36	7	104	0	FALSE	ACH-000725
HCC202_BREAST	RP11-613M10.9--STARD3	1	14	RP11-613M10.9	8147	chr9:37899826:-	STARD3	20439	chr17:37809871:+	ONLY_REF_SPLICE	YES	0	1252	1	0.01	0.0124	0.1734	RP11-613M10.9->chr9:37588410-38068684:-,STARD3->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_3,chr17:37793318-37819737:+	HCC202_BREAST	0.01	1	0.1858	TRUE	0	0	0	1	0	FALSE	ACH-000725
HCC202_BREAST	SLC20A2--PLAT	1	14	SLC20A2	3251	chr8:42391498:-	PLAT	30269	chr8:42050729:-	ONLY_REF_SPLICE	YES	65	0	0.19	1	0.0124	0.1734	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,PLAT->chr8:42032236-42065242:-,plasminogen_activator,_tissue_type	HCC202_BREAST	0.19	1	0.1858	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SLC20A2--PLAT	1	14	SLC20A2	1475	chr8:42396595:-	PLAT	30269	chr8:42050729:-	ONLY_REF_SPLICE	YES	47	0	0.24	1	0.0124	0.1734	SLC20A2->chr8:42273993-42397069:-,solute_carrier_family_20_member_2,PLAT->chr8:42032236-42065242:-,plasminogen_activator,_tissue_type	HCC202_BREAST	0.24	1	0.1858	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-CO1--MT-ND1	4	1	MT-CO1	1699	chrM:6602:+	MT-ND1	6056	chrM:3820:+	INCL_NON_REF_SPLICE	YES	23949	9517	0	0	0.0496	0.0124	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC202_BREAST	0	0	0.062	FALSE	39	30	6	19	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	5	MT-ND4	1531	chrM:11290:+	MT-ATP8	5475	chrM:8462:+	INCL_NON_REF_SPLICE	YES	19965	4	0	0.67	0.0372	0.0619	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.67	0.0991	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	5	MT-ND4	1498	chrM:11257:+	MT-ATP8	5467	chrM:8454:+	INCL_NON_REF_SPLICE	YES	17831	1	0	0.89	0.0372	0.0619	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.89	0.0991	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ND4L	4	1	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	5	0	0.5	1	0.0496	0.0124	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC202_BREAST	0.5	1	0.062	FALSE	344	821	44	306	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	4	1	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5738	108	0	0.04	0.0496	0.0124	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.04	0.062	FALSE	41	30	6	102	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND6--MT-TE	3	5	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0.0619	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC202_BREAST	1	1	0.0991	FALSE	499	1288	110	792	0	FALSE	ACH-000725
HCC202_BREAST	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	102	1	0.05	0.0496	0.0124	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC202_BREAST	0.05	1	0.062	TRUE	465	1949	224	605	0	FALSE	ACH-000725
HCC202_BREAST	MT-CO1--MT-ND1	4	0	MT-CO1	1316	chrM:6219:+	MT-ND1	6343	chrM:4107:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC202_BREAST	1	1	0.0496	FALSE	39	29	6	19	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	4	MT-ND4	1452	chrM:11211:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18286	10	0	0.41	0.0372	0.0496	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.41	0.0868	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	1	1	0.0496	FALSE	231	204	14	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	4	MT-ND4	1477	chrM:11236:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	17890	10	0	0.41	0.0372	0.0496	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.41	0.0868	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	4	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	18294	108	0	0.06	0.0372	0.0496	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.06	0.0868	FALSE	231	217	16	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ND4L	4	0	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC202_BREAST	1	1	0.0496	FALSE	344	821	44	306	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	4	0	MT-ND5	1128	chrM:12464:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	1	1	0.0496	FALSE	41	30	6	101	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0496	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC202_BREAST	1	1	0.0496	FALSE	499	1288	110	792	0	FALSE	ACH-000725
HCC202_BREAST	ZNF526--CXCL17	3	4	ZNF526	1117	chr19:42724539:+	CXCL17	9634	chr19:42946919:-	INCL_NON_REF_SPLICE	YES	0	86	1	0.08	0.0372	0.0496	ZNF526->chr19:42724423-42732353:+,zinc_finger_protein_526,CXCL17->C-X-C_motif_chemokine_ligand_17,chr19:42932440-42947200:-	HCC202_BREAST	0.08	1	0.0868	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	FGD1--SLC47A2	3	3	FGD1	2041	chrX:54521559:-	SLC47A2	31766	chr17:19605987:-	ONLY_REF_SPLICE	YES	24	0	0.2	1	0.0372	0.0372	FGD1->FYVE,_RhoGEF_and_PH_domain_containing_1,chrX:54471887-54522599:-,SLC47A2->chr17:19581601-19622292:-,solute_carrier_family_47_member_2	HCC202_BREAST	0.2	1	0.0744	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-CO1--MT-ND1	3	3	MT-CO1	1577	chrM:6480:+	MT-ND1	5559	chrM:3323:+	INCL_NON_REF_SPLICE	YES	21052	0	0	1	0.0372	0.0372	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC202_BREAST	0	1	0.0744	FALSE	39	30	6	19	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	3	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	YES	13550	0	0	1	0.0372	0.0372	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	1	0.0744	FALSE	231	204	14	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	3	MT-ND5	1331	chrM:12667:+	MT-ATP8	5882	chrM:8435:+	INCL_NON_REF_SPLICE	YES	5459	1	0	0.86	0.0372	0.0372	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.86	0.0744	FALSE	42	35	7	104	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	3	MT-ND5	1408	chrM:12744:+	MT-ATP8	5912	chrM:8465:+	INCL_NON_REF_SPLICE	YES	5324	8	0	0.43	0.0372	0.0372	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.43	0.0744	FALSE	42	36	7	104	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1252	chrM:11011:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	13883	1	0	0.83	0.0372	0.0248	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.83	0.062	FALSE	231	204	14	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	NO	13372	152	0	0.03	0.0372	0.0248	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.03	0.062	FALSE	231	204	14	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	2	MT-ND5	1671	chrM:13007:+	MT-ATP8	5931	chrM:8484:+	INCL_NON_REF_SPLICE	YES	3746	847	0	0.01	0.0372	0.0248	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	0	0.01	0.062	FALSE	42	36	7	104	0	FALSE	ACH-000725
HCC202_BREAST	RP11-96H19.1--RP11-446N19.1	2	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	5	0	0.62	1	0.0248	0.0743	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC202_BREAST	0.62	1	0.0991	FALSE	407	2205	196	549	0	FALSE	ACH-000725
HCC202_BREAST	CATSPERG--CARD8	1	9	CATSPERG	4876	chr19:38835008:+	CARD8	28100	chr19:48753135:-	ONLY_REF_SPLICE	YES	2	18	0.83	0.36	0.0124	0.1115	CATSPERG->cation_channel_sperm_associated_auxiliary_subunit_gamma,chr19:38826415-38861589:+,CARD8->Oncogene{Bushman},caspase_recruitment_domain_family_member_8,chr19:48684027-48759203:-	HCC202_BREAST	0.36	0.83	0.1239	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	MT-CO1--MT-ND1	3	1	MT-CO1	1703	chrM:6606:+	MT-ND1	6057	chrM:3821:+	INCL_NON_REF_SPLICE	YES	23638	9583	0	0	0.0372	0.0124	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HCC202_BREAST	0	0	0.0496	FALSE	39	30	6	19	0	FALSE	ACH-000725
HCC202_BREAST	PCMTD1--RP11-317N12.1	3	1	PCMTD1	3775	chr8:52773421:-	RP11-317N12.1	27080	chr8:33895881:+	ONLY_REF_SPLICE	NO	54	1	0.07	0.8	0.0372	0.0124	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,RP11-317N12.1->chr8:33462374-33896526:+	HCC202_BREAST	0.07	0.8	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PCMTD1--RP11-317N12.1	3	1	PCMTD1	3791	chr8:52773405:-	RP11-317N12.1	27080	chr8:33895881:+	ONLY_REF_SPLICE	YES	60	1	0.06	0.8	0.0372	0.0124	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,RP11-317N12.1->chr8:33462374-33896526:+	HCC202_BREAST	0.06	0.8	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PPP2R3A--NCK1	3	1	PPP2R3A	19245	chr3:135825164:+	NCK1	30157	chr3:136646826:+	ONLY_REF_SPLICE	YES	15	15	0.21	0.21	0.0372	0.0124	PPP2R3A->chr3:135684515-135866733:+,protein_phosphatase_2_regulatory_subunit_B'',_alpha,NCK1->NCK_adaptor_protein_1,Oncogene{Bushman},chr3:136581050-136668665:+	HCC202_BREAST	0.21	0.21	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF256--TDRD12	1	9	ZNF256	1234	chr19:58458810:-	TDRD12	9521	chr19:33222631:+	ONLY_REF_SPLICE	YES	87	0	0.1	1	0.0124	0.1115	ZNF256->chr19:58452201-58459043:-,zinc_finger_protein_256,TDRD12->chr19:33210659-33320483:+,tudor_domain_containing_12	HCC202_BREAST	0.1	1	0.1239	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	DCUN1D2--TFDP1	3	0	DCUN1D2	1286	chr13:114144982:-	TFDP1	18891	chr13:114265311:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	{Klijn_CCL:Lung=1},LOCAL_INVERSION:-:+:[93746],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TFDP1->chr13:114239013-114295785:+,transcription_factor_Dp-1	HCC202_BREAST	1	1	0.0372	TRUE	0	1	0	6	1	TRUE	ACH-000725
HCC202_BREAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1031	chrM:10790:+	MT-ATP8	5393	chrM:8380:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	1	1	0.0372	FALSE	230	191	14	283	0	FALSE	ACH-000725
HCC202_BREAST	MT-ND5--MT-ATP8	3	0	MT-ND5	1143	chrM:12479:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0372	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC202_BREAST	1	1	0.0372	FALSE	41	30	6	101	0	FALSE	ACH-000725
HCC202_BREAST	MUC6--TOLLIP	3	0	MUC6	6667	chr11:1028646:-	TOLLIP	33180	chr11:1310006:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	MUC6->Oncogene{Bushman},chr11:1012821-1036706:-,mucin_6,_oligomeric_mucus/gel-forming,TOLLIP->chr11:1295601-1330884:-,toll_interacting_protein	HCC202_BREAST	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	NOL12--GGA1	3	0	NOL12	22656	chr22:38147835:+	GGA1	55805	chr22:38028003:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0372	0	LOCAL_REARRANGEMENT:+:[48109],NOL12->chr22:38077680-38170137:+,nucleolar_protein_12,GGA1->Oncogene{Bushman},chr22:38004481-38029571:+,golgi-associated,_gamma_adaptin_ear_containing,_ARF_binding_protein_1	HCC202_BREAST	1	1	0.0372	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	BRWD1--LCA5L	2	0	BRWD1	16047	chr21:40641825:-	LCA5L	66587	chr21:40795416:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	LOCAL_REARRANGEMENT:-:[84285],BRWD1->bromodomain_and_WD_repeat_domain_containing_1,chr21:40556102-40693485:-,LCA5L->Leber_congenital_amaurosis_5-like,chr21:40777770-40817731:-	HCC202_BREAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	HECTD4--TMEM116	2	0	HECTD4	10320	chr12:112717032:-	TMEM116	89787	chr12:112381173:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,TMEM116->chr12:112369086-112450970:-,transmembrane_protein_116	HCC202_BREAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	NPDC1--ANAPC2	2	0	NPDC1	3492	chr9:139937379:-	ANAPC2	13757	chr9:140078243:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	NPDC1->chr9:139933922-139940655:-,neural_proliferation,_differentiation_and_control,_1,ANAPC2->anaphase_promoting_complex_subunit_2,chr9:140069236-140082989:-	HCC202_BREAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SERINC2--ZCCHC17	2	0	SERINC2	10790	chr1:31901915:+	ZCCHC17	21313	chr1:31810022:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	LOCAL_REARRANGEMENT:+:[44629],SERINC2->chr1:31882412-31907525:+,serine_incorporator_2,ZCCHC17->chr1:31769842-31837783:+,zinc_finger_CCHC-type_containing_17	HCC202_BREAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	SERINC2--ZCCHC17	2	0	SERINC2	11260	chr1:31902385:+	ZCCHC17	21313	chr1:31810022:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0248	0	LOCAL_REARRANGEMENT:+:[44629],SERINC2->chr1:31882412-31907525:+,serine_incorporator_2,ZCCHC17->chr1:31769842-31837783:+,zinc_finger_CCHC-type_containing_17	HCC202_BREAST	1	1	0.0248	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	ZNF256--TDRD12	1	4	ZNF256	1234	chr19:58458810:-	TDRD12	10680	chr19:33229762:+	ONLY_REF_SPLICE	YES	87	6	0.05	0.45	0.0124	0.0496	ZNF256->chr19:58452201-58459043:-,zinc_finger_protein_256,TDRD12->chr19:33210659-33320483:+,tudor_domain_containing_12	HCC202_BREAST	0.05	0.45	0.062	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	OPHN1--KB-1562D12.1	1	3	OPHN1	2047	chrX:67652709:-	KB-1562D12.1	37011	chr8:102473845:-	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.0124	0.0372	OPHN1->chrX:67262186-67653755:-,oligophrenin_1,KB-1562D12.1->chr8:102473405-102504727:-	HCC202_BREAST	0.2	1	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	PCMTD1--RP11-317N12.1	1	3	PCMTD1	3791	chr8:52773405:-	RP11-317N12.1	26041	chr8:33892404:+	ONLY_REF_SPLICE	YES	60	1	0.06	0.8	0.0124	0.0372	PCMTD1->chr8:52730140-52811735:-,protein-L-isoaspartate_(D-aspartate)_O-methyltransferase_domain_containing_1,RP11-317N12.1->chr8:33462374-33896526:+	HCC202_BREAST	0.06	0.8	0.0496	TRUE	0	0	0	1	0	TRUE	ACH-000725
HCC202_BREAST	CCDC6--ANK3	1	2	CCDC6	2685	chr10:61612311:-	ANK3	79490	chr10:61815794:-	ONLY_REF_SPLICE	NO	98	45	0.03	0.06	0.0124	0.0248	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Thyroid=1,Muscle_-_Skeletal=1},YOSHIHARA_TCGA_num_samples[BRCA:2|LUAD:1|OV:4],{Klijn_CCL:Ovary=1,Breast=1},CCDC6->Oncogene{Bushman},chr10:61548521-61666414:-,coiled-coil_domain_containing_6,ANK3->ankyrin_3,_node_of_Ranvier_(ankyrin_G),chr10:61786056-62493248:-	HCC202_BREAST	0.03	0.06	0.0372	TRUE	0	0	0	1	0	FALSE	ACH-000725
HCC202_BREAST	ERBB2--ESPN	1	1	ERBB2	16192	chr17:37872192:+	ESPN	40239	chr1:6511663:+	ONLY_REF_SPLICE	YES	4914	13	0	0.13	0.0124	0.0124	ERBB2->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr17:37844167-37886679:+,erb-b2_receptor_tyrosine_kinase_2,ESPN->chr1:6484848-6521430:+,espin	HCC202_BREAST	0	0.13	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000725
HCC202_BREAST	FARP2--WBSCR22	1	1	FARP2	13097	chr2:242357524:+	WBSCR22	50280	chr7:73106926:+	ONLY_REF_SPLICE	YES	10	403	0.17	0	0.0124	0.0124	FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+,WBSCR22->Williams-Beuren_syndrome_chromosome_region_22,chr7:73097355-73119491:+	HCC202_BREAST	0	0.17	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000725
HCC202_BREAST	FBXL20--SNF8	1	1	FBXL20	1351	chr17:37558426:-	SNF8	31551	chr17:47009079:-	ONLY_REF_SPLICE	YES	5	1031	0.29	0	0.0124	0.0124	FBXL20->F-box_and_leucine-rich_repeat_protein_20,chr17:37415384-37558776:-,SNF8->SNF8,_ESCRT-II_complex_subunit,chr17:47006678-47022479:-	HCC202_BREAST	0	0.29	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000725
HCC202_BREAST	H2AFV--RPL30	1	1	H2AFV	2193	chr7:44882876:-	RPL30	14182	chr8:99057627:-	ONLY_REF_SPLICE	YES	347	45	0.01	0.04	0.0124	0.0124	H2AFV->H2A_histone_family_member_V,chr7:44866390-44887682:-,RPL30->chr8:99037079-99058697:-,ribosomal_protein_L30	HCC202_BREAST	0.01	0.04	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000725
HCC202_BREAST	OPHN1--NDUFB6	1	1	OPHN1	14021	chrX:67417028:-	NDUFB6	37243	chr9:32571050:-	ONLY_REF_SPLICE	YES	17	571	0.11	0	0.0124	0.0124	OPHN1->chrX:67262186-67653755:-,oligophrenin_1,NDUFB6->NADH:ubiquinone_oxidoreductase_subunit_B6,chr9:32552997-32573160:-	HCC202_BREAST	0	0.11	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000725
HCC202_BREAST	SIPA1L3--ZNF524	1	1	SIPA1L3	26589	chr19:38673380:+	ZNF524	40882	chr19:56113441:+	ONLY_REF_SPLICE	YES	161	39	0.01	0.05	0.0124	0.0124	SIPA1L3->chr19:38397868-38699012:+,signal_induced_proliferation_associated_1_like_3,ZNF524->chr19:56111388-56114504:+,zinc_finger_protein_524	HCC202_BREAST	0.01	0.05	0.0248	FALSE	0	0	0	1	0	FALSE	ACH-000725
HCC202_BREAST	TNS3--PKD1L1	1	1	TNS3	9815	chr7:47520701:-	PKD1L1	108647	chr7:47814764:-	ONLY_REF_SPLICE	YES	116	1	0.02	0.67	0.0124	0.0124	{Klijn_CCL:Lung=2},TNS3->chr7:47314752-47622156:-,tensin_3,PKD1L1->chr7:47814250-47988088:-,polycystin_1_like_1,_transient_receptor_potential_channel_interacting	HCC202_BREAST	0.02	0.67	0.0248	TRUE	0	0	0	1	0	FALSE	ACH-000725
NCIH28_PLEURA	MT-ND5--MT-ATP8	252	14	MT-ND5	2243	chrM:13579:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	3394	8	0.07	0.97	2.6674	0.1482	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0.07	0.97	2.8156	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	TIMM23B--LINC00843	78	27	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8256	0.2858	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH28_PLEURA	1	1	1.1114	TRUE	508	994	45	981	0	FALSE	ACH-000648
NCIH28_PLEURA	TIMM23--RP11-464F9.1	42	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	262	1	0.15	0.98	0.4446	0.0318	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH28_PLEURA	0.15	0.98	0.4764	TRUE	519	3926	326	965	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	27	13	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	5175	61	0.01	0.4	0.2858	0.1376	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0.01	0.4	0.4234	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	28	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	8792	3	0	0.91	0.2964	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.91	0.307	FALSE	230	193	14	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	19	26	MT-ND5	2730	chrM:14066:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	YES	4	0	0.92	1	0.2011	0.2752	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0.92	1	0.4763	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	NPM1P24--SET	22	1	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	44	841	0.34	0.03	0.2329	0.0106	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH28_PLEURA	0.03	0.34	0.2435	TRUE	0	0	0	434	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	18	13	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4	561	0.89	0.05	0.1905	0.1376	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0.05	0.89	0.3281	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND6--MT-TE	19	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2011	0.0318	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH28_PLEURA	1	1	0.2329	FALSE	499	1288	110	792	0	FALSE	ACH-000648
NCIH28_PLEURA	HMOX1--MT-ND4L	19	1	HMOX1	7050	chr22:35789498:+	MT-ND4L	10904	chrM:10614:+	INCL_NON_REF_SPLICE	YES	3245	3057	0.01	0.01	0.2011	0.0106	HMOX1->chr22:35776354-35790207:+,heme_oxygenase_1,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH28_PLEURA	0.01	0.01	0.2117	FALSE	0	0	0	4	0	FALSE	ACH-000648
NCIH28_PLEURA	HSP90AB1--MT-RNR2	17	3	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	2354	0	0.01	1	0.1799	0.0318	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH28_PLEURA	0.01	1	0.2117	FALSE	13	9	0	364	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND6--MT-TE	16	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1694	0.0423	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH28_PLEURA	1	1	0.2117	FALSE	499	1288	110	792	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-TA--MT-TC	16	2	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1694	0.0212	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH28_PLEURA	1	1	0.1906	FALSE	462	80	0	856	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-TA--MT-TC	15	2	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1588	0.0212	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH28_PLEURA	1	1	0.18	FALSE	462	80	0	856	0	FALSE	ACH-000648
NCIH28_PLEURA	RP11-123O10.4--GRIP1	13	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1376	0.0318	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH28_PLEURA	1	1	0.1694	FALSE	416	2512	207	587	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	13	1	MT-ND5	1243	chrM:12579:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	NO	4675	2	0	0.88	0.1376	0.0106	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.88	0.1482	FALSE	41	30	6	102	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND3--MT-ATP8	13	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1376	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	1	1	0.1376	FALSE	351	233	23	137	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	11	7	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10451	8	0	0.69	0.1164	0.0741	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.69	0.1905	FALSE	231	217	16	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND6--MT-TE	10	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	16	0	0.57	1	0.1059	0.1164	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH28_PLEURA	0.57	1	0.2223	FALSE	499	1288	110	792	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	5	28	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0.2964	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	1	1	0.3493	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	4	30	MT-ND5	2835	chrM:14171:+	MT-ATP8	5865	chrM:8418:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0.3176	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	1	1	0.3599	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	11	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8741	8	0	0.6	0.1164	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.6	0.127	FALSE	230	198	14	283	0	FALSE	ACH-000648
NCIH28_PLEURA	NPM1P24--SET	11	1	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	44	1068	0.21	0.01	0.1164	0.0106	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH28_PLEURA	0.01	0.21	0.127	TRUE	0	0	0	434	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	3	30	MT-ND5	2792	chrM:14128:+	MT-ATP8	5856	chrM:8409:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0.3176	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	1	1	0.3494	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND1--MT-TL1	4	25	MT-ND1	1094	chrM:3400:+	MT-TL1	4988	chrM:3261:+	INCL_NON_REF_SPLICE	YES	2	0	0.94	1	0.0423	0.2646	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH28_PLEURA	0.94	1	0.3069	FALSE	210	95	5	49	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	8	8	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	10545	0	0	1	0.0847	0.0847	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.1694	FALSE	231	217	16	283	0	FALSE	ACH-000648
NCIH28_PLEURA	C15orf57--CBX3	8	7	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	35	37	0.3	0.29	0.0847	0.0741	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH28_PLEURA	0.29	0.3	0.1588	TRUE	267	562	48	632	0	FALSE	ACH-000648
NCIH28_PLEURA	SHPK--TAX1BP3	9	3	SHPK	1271	chr17:3539346:-	TAX1BP3	30520	chr17:3568092:-	ONLY_REF_SPLICE	YES	21	27	0.36	0.31	0.0953	0.0318	{Klijn_CCL:Other=1},LOCAL_INVERSION:-,chr17:-:[26653],SHPK->chr17:3468738-3539543:-,chr17:3511556-3539616:-,sedoheptulokinase,TAX1BP3->Tax1_binding_protein_3,chr17:3566196-3571976:-	NCIH28_PLEURA	0.31	0.36	0.1271	TRUE	0	0	0	1	0	TRUE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	5	16	MT-ND5	2099	chrM:13435:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	5055	0	0	1	0.0529	0.1694	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.2223	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	3	23	MT-ND5	2667	chrM:14003:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	1016	0	0.02	1	0.0318	0.2435	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0.02	1	0.2753	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	4	18	MT-ND5	2243	chrM:13579:+	MT-ATP8	5862	chrM:8415:+	INCL_NON_REF_SPLICE	YES	3394	0	0.01	1	0.0423	0.1905	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0.01	1	0.2328	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	4	18	MT-ND5	2285	chrM:13621:+	MT-ATP8	5880	chrM:8433:+	INCL_NON_REF_SPLICE	YES	2569	0	0.01	1	0.0423	0.1905	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0.01	1	0.2328	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	5	14	MT-ND5	2207	chrM:13543:+	MT-ATP8	5901	chrM:8454:+	INCL_NON_REF_SPLICE	YES	3853	0	0	1	0.0529	0.1482	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.2011	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	8	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10174	8	0	0.53	0.0847	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.53	0.0953	FALSE	231	205	14	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	4	17	MT-ND5	2638	chrM:13974:+	MT-ATP8	5905	chrM:8458:+	INCL_NON_REF_SPLICE	YES	1543	0	0.01	1	0.0423	0.1799	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0.01	1	0.2222	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	3	21	MT-ND5	2712	chrM:14048:+	MT-ATP8	5909	chrM:8462:+	INCL_NON_REF_SPLICE	YES	22	2	0.52	0.92	0.0318	0.2223	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0.52	0.92	0.2541	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND6--MT-TE	6	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0635	0.0953	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH28_PLEURA	1	1	0.1588	FALSE	499	1288	110	792	0	FALSE	ACH-000648
NCIH28_PLEURA	RRP12--MMS19	8	1	RRP12	20351	chr10:99125865:-	MMS19	36086	chr10:99230618:-	ONLY_REF_SPLICE	YES	60	73	0.13	0.11	0.0847	0.0106	LOCAL_REARRANGEMENT:-:[56954],RRP12->chr10:99116115-99161127:-,ribosomal_RNA_processing_12_homolog,MMS19->MMS19_homolog,_cytosolic_iron-sulfur_assembly_component,chr10:99218081-99258551:-	NCIH28_PLEURA	0.11	0.13	0.0953	TRUE	0	0	0	1	0	TRUE	ACH-000648
NCIH28_PLEURA	MT-ND1--MT-TL1	4	16	MT-ND1	1342	chrM:3648:+	MT-TL1	5013	chrM:3286:+	INCL_NON_REF_SPLICE	YES	7	0	0.74	1	0.0423	0.1694	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH28_PLEURA	0.74	1	0.2117	FALSE	210	95	5	49	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	3	20	MT-ND5	2718	chrM:14054:+	MT-ATP8	5915	chrM:8468:+	INCL_NON_REF_SPLICE	YES	13	8	0.64	0.74	0.0318	0.2117	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0.64	0.74	0.2435	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	3	20	MT-ND5	2340	chrM:13676:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	YES	2204	0	0.01	1	0.0318	0.2117	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0.01	1	0.2435	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND6--MT-TE	4	16	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	16	0	0.56	1	0.0423	0.1694	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH28_PLEURA	0.56	1	0.2117	FALSE	499	1288	110	792	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	5	11	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10137	62	0	0.21	0.0529	0.1164	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.21	0.1693	FALSE	231	217	16	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	4	15	MT-ND5	2178	chrM:13514:+	MT-ATP8	5875	chrM:8428:+	INCL_NON_REF_SPLICE	YES	4040	0	0	1	0.0423	0.1588	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.2011	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	4	14	MT-ND5	2807	chrM:14143:+	MT-ATP8	5935	chrM:8488:+	INCL_NON_REF_SPLICE	YES	0	921	1	0.02	0.0423	0.1482	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0.02	1	0.1905	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	3	17	MT-ND4	2283	chrM:12042:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	28	0	0.42	1	0.0318	0.1799	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0.42	1	0.2117	FALSE	213	207	15	279	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	6	5	MT-ND4	1563	chrM:11322:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12223	62	0	0.15	0.0635	0.0529	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.15	0.1164	FALSE	231	217	16	283	0	FALSE	ACH-000648
NCIH28_PLEURA	NPM1P24--SET	7	1	NPM1P24	1537	chr10:74677756:-	SET	12309	chr9:131456204:+	INCL_NON_REF_SPLICE	YES	44	952	0.15	0.01	0.0741	0.0106	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH28_PLEURA	0.01	0.15	0.0847	FALSE	0	0	0	434	0	FALSE	ACH-000648
NCIH28_PLEURA	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0741	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH28_PLEURA	1	1	0.0741	FALSE	292	1546	117	613	0	FALSE	ACH-000648
NCIH28_PLEURA	ACTR3C--RP11-728K20.1	6	2	ACTR3C	8614	chr7:149981842:-	RP11-728K20.1	17753	chr7:149606794:-	INCL_NON_REF_SPLICE	YES	8	0	0.5	1	0.0635	0.0212	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	NCIH28_PLEURA	0.5	1	0.0847	TRUE	0	5	0	16	1	TRUE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	3	14	MT-ND4	2214	chrM:11973:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	3862	0	0	1	0.0318	0.1482	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.18	FALSE	222	211	16	282	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	3	14	MT-ND4	2210	chrM:11969:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	3894	0	0	1	0.0318	0.1482	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.18	FALSE	222	212	16	282	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	5	6	MT-ND4	1754	chrM:11513:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	10091	0	0	1	0.0529	0.0635	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.1164	FALSE	231	217	16	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND3--MT-ATP8	6	1	MT-ND3	1048	chrM:10106:+	MT-ATP8	4405	chrM:8424:+	INCL_NON_REF_SPLICE	YES	161	0	0.04	1	0.0635	0.0106	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0.04	1	0.0741	FALSE	351	233	23	137	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	5	5	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	12705	62	0	0.14	0.0529	0.0529	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.14	0.1058	FALSE	231	217	16	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND3--MT-ATP8	6	0	MT-ND3	1094	chrM:10152:+	MT-ATP8	4474	chrM:8493:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0635	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	1	1	0.0635	FALSE	351	233	23	137	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	3	12	MT-ND5	2047	chrM:13383:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	4148	0	0	1	0.0318	0.127	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.1588	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND3--MT-ATP8	5	3	MT-ND3	1283	chrM:10341:+	MT-ATP8	4411	chrM:8430:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0.0318	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	1	1	0.0847	FALSE	351	233	23	137	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	4	7	MT-ND4	1824	chrM:11583:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	9980	8	0	0.58	0.0423	0.0741	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.58	0.1164	FALSE	231	217	16	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	4	7	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	10711	851	0	0.01	0.0423	0.0741	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.01	0.1164	FALSE	231	217	16	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	3	11	MT-ND4	1959	chrM:11718:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	10666	0	0	1	0.0318	0.1164	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.1482	FALSE	231	217	16	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	3	11	MT-ND4	2089	chrM:11848:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	NO	8512	62	0	0.18	0.0318	0.1164	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.18	0.1482	FALSE	231	215	16	283	0	FALSE	ACH-000648
NCIH28_PLEURA	C4orf22--PPARGC1A	5	2	C4orf22	1160	chr4:81257033:+	PPARGC1A	31541	chr4:23833374:-	ONLY_REF_SPLICE	YES	0	67	1	0.09	0.0529	0.0212	C4orf22->chr4:81256874-81884910:+,chromosome_4_open_reading_frame_22,PPARGC1A->PPARG_coactivator_1_alpha,chr4:23756664-23905712:-	NCIH28_PLEURA	0.09	1	0.0741	TRUE	0	0	0	1	0	TRUE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	3	10	MT-ND4	2182	chrM:11941:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	5224	201	0	0.06	0.0318	0.1059	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.06	0.1377	FALSE	231	215	16	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	4	6	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	10499	1474	0	0.01	0.0423	0.0635	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.01	0.1058	FALSE	231	217	16	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	5	2	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	5642	0	0	1	0.0529	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.0741	FALSE	230	193	14	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	4	5	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	11875	0	0	1	0.0423	0.0529	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.0952	FALSE	231	217	16	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	5	1	MT-ND4	1285	chrM:11044:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	10223	8	0	0.43	0.0529	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.43	0.0635	FALSE	231	205	14	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND6--MT-TE	4	5	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.9	1	0.0423	0.0529	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH28_PLEURA	0.9	1	0.0952	FALSE	499	1288	110	792	0	FALSE	ACH-000648
NCIH28_PLEURA	ALDOA--MT-CO3	5	0	ALDOA	8825	chr16:30078597:+	MT-CO3	15052	chrM:9252:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0529	0	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH28_PLEURA	1	1	0.0529	FALSE	0	0	0	5	0	FALSE	ACH-000648
NCIH28_PLEURA	C15orf57--CBX3	4	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	32	37	0.18	0.16	0.0423	0.0318	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCIH28_PLEURA	0.16	0.18	0.0741	TRUE	267	562	48	632	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND1--MT-TL1	3	7	MT-ND1	1040	chrM:3346:+	MT-TL1	4977	chrM:3250:+	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0318	0.0741	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH28_PLEURA	0.91	1	0.1059	FALSE	210	95	5	49	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND3--MT-ATP8	4	2	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	NO	54	8	0.1	0.43	0.0423	0.0212	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0.1	0.43	0.0635	FALSE	351	233	23	137	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	4	2	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	YES	5286	0	0	1	0.0423	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.0635	FALSE	230	193	14	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	4	2	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	NO	8792	0	0	1	0.0423	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.0635	FALSE	230	197	14	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	3	6	MT-ND4	1477	chrM:11236:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	YES	11256	0	0	1	0.0318	0.0635	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.0953	FALSE	231	217	16	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	3	6	MT-ND5	1795	chrM:13131:+	MT-ATP8	5884	chrM:8437:+	INCL_NON_REF_SPLICE	NO	2009	0	0	1	0.0318	0.0635	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.0953	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	ALDOA--MT-CO3	3	5	ALDOA	11901	chr16:30081673:+	MT-CO3	15101	chrM:9301:+	INCL_NON_REF_SPLICE	NO	0	6	1	0.57	0.0318	0.0529	ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH28_PLEURA	0.57	1	0.0847	FALSE	0	0	0	3	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND3--MT-ATP8	4	1	MT-ND3	1219	chrM:10277:+	MT-ATP8	4455	chrM:8474:+	INCL_NON_REF_SPLICE	YES	1087	83	0	0.06	0.0423	0.0106	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.06	0.0529	FALSE	351	233	23	137	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	4	1	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8856	62	0	0.07	0.0423	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.07	0.0529	FALSE	230	198	14	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	3	5	MT-ND4	1566	chrM:11325:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	12147	0	0	1	0.0318	0.0529	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.0847	FALSE	231	217	16	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	3	5	MT-ND5	1604	chrM:12940:+	MT-ATP8	5854	chrM:8407:+	INCL_NON_REF_SPLICE	NO	2972	0	0	1	0.0318	0.0529	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.0847	FALSE	42	36	7	104	0	FALSE	ACH-000648
NCIH28_PLEURA	LINC01036--LINC01037	4	0	LINC01036	3249	chr1:187298192:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	NCIH28_PLEURA	1	1	0.0423	FALSE	0	24	0	62	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND1--MT-TL1	4	0	MT-ND1	1092	chrM:3398:+	MT-TL1	5029	chrM:3302:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0423	0	LOCAL_REARRANGEMENT:+:[3],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-TL1->chrM:3230-3304:+,mitochondrially_encoded_tRNA_leucine_1_(UUA/G)	NCIH28_PLEURA	1	1	0.0423	FALSE	210	95	5	49	0	FALSE	ACH-000648
NCIH28_PLEURA	RP11-96H19.1--RP11-446N19.1	4	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0423	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH28_PLEURA	1	1	0.0423	FALSE	515	4851	409	746	0	FALSE	ACH-000648
NCIH28_PLEURA	HSP90AB1--MT-RNR2	3	3	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	2368	0	0	1	0.0318	0.0318	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH28_PLEURA	0	1	0.0636	FALSE	13	9	0	364	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	3	3	MT-ND5	1882	chrM:13218:+	MT-ATP8	5970	chrM:8523:+	INCL_NON_REF_SPLICE	YES	3657	1861	0	0	0.0318	0.0318	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0	0.0636	FALSE	43	37	8	105	0	FALSE	ACH-000648
NCIH28_PLEURA	HSP90AB1--MT-RNR2	3	2	HSP90AB1	7270	chr6:44221093:+	MT-RNR2	10834	chrM:1707:+	INCL_NON_REF_SPLICE	YES	2440	0	0	1	0.0318	0.0212	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH28_PLEURA	0	1	0.053	FALSE	13	9	0	364	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	3	2	MT-ND4	1112	chrM:10871:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	5642	0	0	1	0.0318	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.053	FALSE	230	193	14	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	3	2	MT-ND4	1287	chrM:11046:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	10327	0	0	1	0.0318	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.053	FALSE	231	205	14	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	3	2	MT-ND4	1359	chrM:11118:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	11795	0	0	1	0.0318	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.053	FALSE	231	216	16	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	3	2	MT-ND4	1285	chrM:11044:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	10223	0	0	1	0.0318	0.0212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.053	FALSE	231	205	14	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	3	2	MT-ND5	1627	chrM:12963:+	MT-ATP8	5934	chrM:8487:+	INCL_NON_REF_SPLICE	YES	2814	867	0	0.01	0.0318	0.0212	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.01	0.053	FALSE	42	36	7	104	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND3--MT-ATP8	3	1	MT-ND3	1055	chrM:10113:+	MT-ATP8	4411	chrM:8430:+	INCL_NON_REF_SPLICE	YES	157	0	0.02	1	0.0318	0.0106	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0.02	1	0.0424	FALSE	351	233	23	137	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	3	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	11156	0	0	1	0.0318	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	1	0.0424	FALSE	231	205	14	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	3	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	10174	62	0	0.06	0.0318	0.0106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.06	0.0424	FALSE	231	205	14	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND5--MT-ATP8	3	1	MT-ND5	1227	chrM:12563:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	4856	61	0	0.06	0.0318	0.0106	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	0	0.06	0.0424	FALSE	41	30	6	102	0	FALSE	ACH-000648
NCIH28_PLEURA	NPM1P24--SET	3	1	NPM1P24	1535	chr10:74677758:-	SET	12306	chr9:131456201:+	INCL_NON_REF_SPLICE	NO	44	955	0.08	0	0.0318	0.0106	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH28_PLEURA	0	0.08	0.0424	FALSE	0	0	0	434	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND4--MT-ATP8	3	0	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH28_PLEURA	1	1	0.0318	FALSE	230	191	14	283	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH28_PLEURA	1	1	0.0318	FALSE	499	1288	110	792	0	FALSE	ACH-000648
NCIH28_PLEURA	MT-TC--MT-TY	3	0	MT-TC	1060	chrM:5767:-	MT-TY	4091	chrM:5867:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0318	0	HGNC_GENEFAM,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine,MT-TY->chrM:5826-5891:-,mitochondrially_encoded_tRNA_tyrosine	NCIH28_PLEURA	1	1	0.0318	FALSE	51	280	19	36	0	FALSE	ACH-000648
NCIH28_PLEURA	ESYT2--ZRANB2	2	0	ESYT2	6472	chr7:158586341:-	ZRANB2	40332	chr1:71532617:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	ESYT2->chr7:158523686-158622944:-,extended_synaptotagmin_protein_2,ZRANB2->chr1:71528974-71546980:-,zinc_finger_RANBP2-type_containing_2	NCIH28_PLEURA	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000648
NCIH28_PLEURA	GNPTG--HAGH	2	0	GNPTG	1384	chr16:1402307:+	HAGH	20565	chr16:1859834:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GNPTG->N-acetylglucosamine-1-phosphate_transferase_gamma_subunit,chr16:1401924-1413352:+,HAGH->chr16:1845621-1877195:-,hydroxyacylglutathione_hydrolase	NCIH28_PLEURA	1	1	0.0212	TRUE	0	1	0	1	0	TRUE	ACH-000648
NCIH28_PLEURA	LINC01036--LINC01037	2	0	LINC01036	1105	chr1:187062078:+	LINC01037	7881	chr1:187412760:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	HGNC_GENEFAM,NEIGHBORS[83283],LINC01036->chr1:187061974-187329455:+,long_intergenic_non-protein_coding_RNA_1036,LINC01037->chr1:187412738-187446354:+,long_intergenic_non-protein_coding_RNA_1037	NCIH28_PLEURA	1	1	0.0212	FALSE	0	26	0	50	0	FALSE	ACH-000648
NCIH28_PLEURA	NRIP1--AF127936.7	2	0	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH28_PLEURA	1	1	0.0212	FALSE	25	145	6	90	0	FALSE	ACH-000648
NCIH28_PLEURA	PROSC--CLPTM1L	2	0	PROSC	2996	chr8:37623873:+	CLPTM1L	18228	chr5:1334498:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CLPTM1L->CLPTM1-like,chr5:1317859-1345214:-	NCIH28_PLEURA	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000648
NCIH28_PLEURA	STAG3L2--WWTR1	2	0	STAG3L2	5861	chr7:74299455:-	WWTR1	25918	chr3:149260324:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	STAG3L2->chr7:74112305-74306731:-,stromal_antigen_3-like_2_(pseudogene),WWTR1->WW_domain_containing_transcription_regulator_1,chr3:149235022-149454501:-	NCIH28_PLEURA	1	1	0.0212	TRUE	0	0	0	1	0	TRUE	ACH-000648
NCIH28_PLEURA	TULP4--RP11-732M18.3	2	0	TULP4	2609	chr6:158735300:+	RP11-732M18.3	29240	chr6:158733083:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0212	0	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	NCIH28_PLEURA	1	1	0.0212	TRUE	126	140	6	21	0	FALSE	ACH-000648
NCIH28_PLEURA	ACTR3C--RP11-728K20.1	1	1	ACTR3C	9721	chr7:149946037:-	RP11-728K20.1	18809	chr7:149589487:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0106	0.0106	GTEx_FI:{Brain=[count:2=pct:0.3],Liver=[count:1=pct:0.8],Breast=[count:1=pct:0.9]},ACTR3C->ARP3_actin-related_protein_3_homolog_C,chr7:149941005-150020814:-,RP11-728K20.1->chr7:149588280-149606793:-	NCIH28_PLEURA	0.2	1	0.0212	TRUE	0	2	0	2	2	TRUE	ACH-000648
NCIH28_PLEURA	RFTN1--OXNAD1	1	1	RFTN1	3399	chr3:16535232:-	OXNAD1	30717	chr3:16336363:+	ONLY_REF_SPLICE	YES	10	50	0.17	0.04	0.0106	0.0106	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},NEIGHBORS_OVERLAP:-:+:[36725],RFTN1->chr3:16355081-16555533:-,raftlin,_lipid_raft_linker_1,OXNAD1->chr3:16306706-16391806:+,oxidoreductase_NAD_binding_domain_containing_1	NCIH28_PLEURA	0.04	0.17	0.0212	FALSE	0	0	0	1	0	FALSE	ACH-000648
NCIH28_PLEURA	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	1	1	0.67	0.0106	0.0106	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCIH28_PLEURA	0.67	1	0.0212	FALSE	93	270	15	244	0	FALSE	ACH-000648
CACO2_LARGE_INTESTINE	TIMM23B--LINC00843	134	49	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.99	1.6182	0.5917	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	CACO2_LARGE_INTESTINE	0.99	1	2.2099	TRUE	508	994	45	981	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	TIMM23--RP11-464F9.1	84	13	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	596	4	0.14	0.96	1.0144	0.157	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CACO2_LARGE_INTESTINE	0.14	0.96	1.1714	TRUE	519	3926	326	965	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MT-TA--MT-TN	64	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7729	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CACO2_LARGE_INTESTINE	1	1	0.7729	FALSE	369	2501	205	193	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MT-TA--MT-TC	40	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.483	0.0362	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CACO2_LARGE_INTESTINE	1	1	0.5192	FALSE	462	80	0	856	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	PEX14--PTPN14	33	2	PEX14	3457	chr1:10555378:+	PTPN14	46601	chr1:214531393:-	ONLY_REF_SPLICE	YES	12	38	0.74	0.48	0.3985	0.0242	{Klijn_CCL:Colo-Rectal=1},PEX14->chr1:10532345-10690815:+,peroxisomal_biogenesis_factor_14,PTPN14->Oncogene{Bushman},chr1:214522039-214725792:-,protein_tyrosine_phosphatase,_non-receptor_type_14	CACO2_LARGE_INTESTINE	0.48	0.74	0.4227	TRUE	0	0	0	2	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	C15orf57--CBX3	23	30	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	62	24	0.46	0.69	0.2778	0.3623	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CACO2_LARGE_INTESTINE	0.46	0.69	0.6401	TRUE	267	562	48	632	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	BRCA2--N4BP2L2	19	16	BRCA2	18217	chr13:32921033:+	N4BP2L2	55606	chr13:33018263:-	ONLY_REF_SPLICE	YES	12	9	0.74	0.8	0.2294	0.1932	{Klijn_CCL:Colo-Rectal=1},LOCAL_INVERSION:+:-:[32749],BRCA2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_2,chr13:32889611-32973805:+,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	CACO2_LARGE_INTESTINE	0.74	0.8	0.4226	TRUE	0	0	0	2	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	ZNF654--HMGB2	19	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2294	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	CACO2_LARGE_INTESTINE	1	1	0.2294	TRUE	0	0	0	518	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MT-TA--MT-TN	7	45	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0845	0.5434	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CACO2_LARGE_INTESTINE	1	1	0.6279	FALSE	369	2501	205	193	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	C15orf57--CBX3	11	27	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	62	24	0.38	0.61	0.1328	0.3261	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	CACO2_LARGE_INTESTINE	0.38	0.61	0.4589	TRUE	267	562	48	632	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MT-ND6--MT-TE	16	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1932	0.0362	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CACO2_LARGE_INTESTINE	1	1	0.2294	FALSE	499	1288	110	792	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MT-TA--MT-TN	11	22	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1328	0.2657	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CACO2_LARGE_INTESTINE	1	1	0.3985	FALSE	369	2501	205	193	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MT-TA--MT-TN	7	31	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0845	0.3744	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CACO2_LARGE_INTESTINE	1	1	0.4589	FALSE	369	2501	205	193	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MT-ND6--MT-TE	12	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1449	0.0362	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CACO2_LARGE_INTESTINE	1	1	0.1811	FALSE	499	1288	110	792	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	HSPBP1--GRK5	11	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1328	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	CACO2_LARGE_INTESTINE	1	1	0.1328	TRUE	1	39	0	134	39	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MT-ND6--MT-TE	9	7	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	2	0	0.89	1	0.1087	0.0845	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CACO2_LARGE_INTESTINE	0.89	1	0.1932	FALSE	499	1288	110	792	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MT-TA--MT-TN	3	29	MT-TA	1059	chrM:5597:-	MT-TN	4100	chrM:5699:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0.3502	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CACO2_LARGE_INTESTINE	1	1	0.3864	FALSE	369	2501	205	193	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	DPP3--SLC46A1	8	7	DPP3	13776	chr11:66264948:+	SLC46A1	20103	chr17:26733641:-	ONLY_REF_SPLICE	YES	378	11	0.04	0.58	0.0966	0.0845	DPP3->chr11:66247484-66277130:+,dipeptidyl_peptidase_3,SLC46A1->chr17:26721661-26734215:-,solute_carrier_family_46_member_1	CACO2_LARGE_INTESTINE	0.04	0.58	0.1811	TRUE	0	0	0	2	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	MT-TA--MT-TN	5	14	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	NO	0	0	1	1	0.0604	0.1691	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	CACO2_LARGE_INTESTINE	1	1	0.2295	FALSE	369	2501	205	193	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MT-ND3--MT-ATP8	8	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0966	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	CACO2_LARGE_INTESTINE	1	1	0.0966	FALSE	351	233	23	137	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	SCARB1--UBC	7	4	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	248	78	0.04	0.12	0.0845	0.0483	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	CACO2_LARGE_INTESTINE	0.04	0.12	0.1328	TRUE	55	66	6	101	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MT-ND5--MT-ND6	6	7	MT-ND5	2751	chrM:14087:+	MT-ND6	6159	chrM:14327:-	INCL_NON_REF_SPLICE	YES	1	4102	0.93	0	0.0725	0.0845	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	CACO2_LARGE_INTESTINE	0	0.93	0.157	FALSE	26	124	4	93	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MT-ND5--MT-ND6	4	12	MT-ND5	2794	chrM:14130:+	MT-ND6	5880	chrM:14606:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0.1449	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	CACO2_LARGE_INTESTINE	1	1	0.1932	FALSE	26	124	4	93	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	RP11-444D3.1--SOX5	6	3	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0725	0.0362	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	CACO2_LARGE_INTESTINE	1	1	0.1087	TRUE	477	1352	189	275	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MT-ND6--MT-TE	3	12	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	2	0	0.88	1	0.0362	0.1449	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CACO2_LARGE_INTESTINE	0.88	1	0.1811	FALSE	499	1288	110	792	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	5	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0604	0.0483	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CACO2_LARGE_INTESTINE	1	1	0.1087	FALSE	515	4851	409	746	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	ARL3--CYP17A1-AS1	4	6	ARL3	2279	chr10:104465103:-	CYP17A1-AS1	13996	chr10:104593934:+	ONLY_REF_SPLICE	YES	142	1	0.07	0.91	0.0483	0.0725	ARL3->ADP_ribosylation_factor_like_GTPase_3,chr10:104433488-104474164:-,CYP17A1-AS1->CYP17A1_antisense_RNA_1,chr10:104592478-104594273:+	CACO2_LARGE_INTESTINE	0.07	0.91	0.1208	TRUE	0	0	0	1	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	MT-ND6--MT-TE	3	9	MT-ND6	1053	chrM:14621:-	MT-TE	4526	chrM:14742:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0.1087	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	CACO2_LARGE_INTESTINE	1	1	0.1449	FALSE	499	1288	110	792	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	RP11-680G10.1--GSE1	5	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	79	1	0.07	0.0604	0.0121	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CACO2_LARGE_INTESTINE	0.07	1	0.0725	TRUE	465	1949	224	605	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	HSPBP1--GRK5	5	0	HSPBP1	1852	chr19:55790898:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	CACO2_LARGE_INTESTINE	1	1	0.0604	TRUE	1	39	0	134	39	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	HSPBP1--GRK5	5	0	HSPBP1	1855	chr19:55790895:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0604	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	CACO2_LARGE_INTESTINE	1	1	0.0604	TRUE	1	39	0	134	39	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MT-TA--MT-TC	4	4	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0.0483	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CACO2_LARGE_INTESTINE	1	1	0.0966	FALSE	462	80	0	856	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MT-TA--MT-TC	4	4	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0.0483	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CACO2_LARGE_INTESTINE	1	1	0.0966	FALSE	462	80	0	856	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MT-ND5--MT-ND6	3	5	MT-ND5	2785	chrM:14121:+	MT-ND6	6225	chrM:14261:-	INCL_NON_REF_SPLICE	YES	0	3538	1	0	0.0362	0.0604	HGNC_GENEFAM,LOCAL_INVERSION:+:-:[1],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6	CACO2_LARGE_INTESTINE	0	1	0.0966	FALSE	26	124	4	93	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MT-TA--MT-TC	4	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0.0121	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	CACO2_LARGE_INTESTINE	1	1	0.0604	FALSE	462	80	0	856	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0.0604	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CACO2_LARGE_INTESTINE	1	1	0.0966	FALSE	407	2205	196	549	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	BSG--GZMM	4	0	BSG	2405	chr19:572701:+	GZMM	14559	chr19:547280:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0483	0	{Klijn_CCL:Colo-Rectal=1},LOCAL_REARRANGEMENT:+:[21378],BSG->basigin_(Ok_blood_group),chr19:571297-583493:+,GZMM->chr19:544034-549919:+,granzyme_M	CACO2_LARGE_INTESTINE	1	1	0.0483	TRUE	0	0	0	5	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	CTD-3116E22.6--ZNF274	4	0	CTD-3116E22.6	1796	chr19:9834967:-	ZNF274	17593	chr19:58724344:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	CTD-3116E22.6->chr19:9834684-9835762:-,ZNF274->chr19:58694396-58724928:+,zinc_finger_protein_274	CACO2_LARGE_INTESTINE	1	1	0.0483	TRUE	0	0	0	13	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	HSPBP1--GRK5	4	0	HSPBP1	1849	chr19:55790901:-	GRK5	10994	chr10:120967218:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0483	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	CACO2_LARGE_INTESTINE	1	1	0.0483	TRUE	1	39	0	134	39	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	NRIP1--AF127936.7	4	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0483	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CACO2_LARGE_INTESTINE	1	1	0.0483	FALSE	292	1546	117	613	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	TMEM206--GUCA2B	3	1	TMEM206	8682	chr1:212550904:-	GUCA2B	17125	chr1:42620351:+	ONLY_REF_SPLICE	YES	42	3	0.09	0.57	0.0362	0.0121	TMEM206->chr1:212537273-212588243:-,transmembrane_protein_206,GUCA2B->chr1:42619092-42621495:+,guanylate_cyclase_activator_2B	CACO2_LARGE_INTESTINE	0.09	0.57	0.0483	TRUE	0	0	0	2	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	DPP3--SLC46A1	3	0	DPP3	13776	chr11:66264948:+	SLC46A1	20729	chr17:26733015:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0362	0	DPP3->chr11:66247484-66277130:+,dipeptidyl_peptidase_3,SLC46A1->chr17:26721661-26734215:-,solute_carrier_family_46_member_1	CACO2_LARGE_INTESTINE	1	1	0.0362	TRUE	0	0	0	2	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	REV3L--RPL28	3	0	REV3L	1770	chr6:111804149:-	RPL28	50118	chr19:55897727:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Spleen=[count:3=pct:2.7],Adipose_Tissue=[count:3=pct:1.0],Esophagus=[count:3=pct:0.7],Blood=[count:3=pct:1.7],Skin=[count:3=pct:1.0],Blood_Vessel=[count:2=pct:0.5],Lung=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Thyroid=[count:2=pct:1.1],Pancreas=[count:1=pct:0.6],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Adrenal_Gland=[count:1=pct:1.2],Pituitary=[count:1=pct:1.9],Colon=[count:1=pct:0.5]},GTEx_v2:{count=25;pct=0.29%;dist=Skin_-_Sun_Exposed_(Lower_leg)=4,Cells_-_EBV-transformed_lymphocytes=4,Cells_-_Transformed_fibroblasts=4,Whole_Blood=3,Adipose_-_Subcutaneous=2,Artery_-_Tibial=1,Vagina=1,Artery_-_Aorta=1,Artery_-_Coronary=1,Esophagus_-_Mucosa=1,Adipose_-_Visceral_(Omentum)=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Bladder=1},REV3L->REV3_like,_DNA_directed_polymerase_zeta_catalytic_subunit,chr6:111620234-111804918:-,RPL28->chr19:55896713-55914612:+,ribosomal_protein_L28	CACO2_LARGE_INTESTINE	1	1	0.0362	TRUE	22	156	2	142	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0242	0.0483	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CACO2_LARGE_INTESTINE	1	1	0.0725	FALSE	467	2173	244	435	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	TMEM54--MT-CO2	3	0	TMEM54	2326	chr1:33363811:-	MT-CO2	8517	chrM:7597:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0362	0	TMEM54->chr1:33360195-33367039:-,transmembrane_protein_54,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	CACO2_LARGE_INTESTINE	1	1	0.0362	FALSE	0	0	0	10	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	RP11-680G10.1--GSE1	2	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	36	1	0.1	0.0242	0.0242	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	CACO2_LARGE_INTESTINE	0.1	1	0.0484	TRUE	458	1351	185	561	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	MYL6--UBB	2	1	MYL6	2462	chr12:56553406:+	UBB	10441	chr17:16285216:+	ONLY_REF_SPLICE	NO	175	199	0.02	0.01	0.0242	0.0121	MYL6->chr12:56551945-56557280:+,myosin_light_chain_6,UBB->chr17:16284112-16286059:+,ubiquitin_B	CACO2_LARGE_INTESTINE	0.01	0.02	0.0363	FALSE	0	1	0	1	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0121	0.0604	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	CACO2_LARGE_INTESTINE	1	1	0.0725	FALSE	192	492	57	212	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	BRCA2--N4BP2L2	2	0	BRCA2	18217	chr13:32921033:+	N4BP2L2	57184	chr13:33016685:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	{Klijn_CCL:Colo-Rectal=1},LOCAL_INVERSION:+:-:[32749],BRCA2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},breast_cancer_2,chr13:32889611-32973805:+,N4BP2L2->NEDD4_binding_protein_2-like_2,chr13:33006554-33112970:-	CACO2_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	C17orf76-AS1--AGPS	2	0	C17orf76-AS1	1593	chr17:16342728:+	AGPS	21684	chr2:178326621:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	C17orf76-AS1->chr17:16342136-16381992:+,AGPS->alkylglycerone_phosphate_synthase,chr2:178257372-178408564:+	CACO2_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	OAZ2--ADD1	2	0	OAZ2	1253	chr15:64995228:-	ADD1	21065	chr4:2877623:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	OAZ2->chr15:64979772-64995480:-,ornithine_decarboxylase_antizyme_2,ADD1->adducin_1,chr4:2845584-2931803:+	CACO2_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	RP11-1057B8.2--RP11-452N4.1	2	0	RP11-1057B8.2	3793	chr8:135893523:+	RP11-452N4.1	9814	chr8:136303419:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RP11-1057B8.2->chr8:135862178-135894142:+,RP11-452N4.1->chr8:136246374-136311962:+	CACO2_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	2	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	RP11-227G15.3--ATP2A2	2	0	RP11-227G15.3	3319	chr17:30678931:+	ATP2A2	27282	chr12:110780033:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	RP11-227G15.3->chr17:30651450-30687719:+,ATP2A2->ATPase_sarcoplasmic/endoplasmic_reticulum_Ca2+_transporting_2,chr12:110718561-110788898:+	CACO2_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	STX7--DSP	2	0	STX7	2335	chr6:132824585:-	DSP	52426	chr6:7582875:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0242	0	STX7->chr6:132767006-132834337:-,syntaxin_7,DSP->chr6:7541808-7586950:+,desmoplakin	CACO2_LARGE_INTESTINE	1	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000003
CACO2_LARGE_INTESTINE	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	6	0	0.33	1	0.0121	0.0242	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	CACO2_LARGE_INTESTINE	0.33	1	0.0363	FALSE	164	806	69	479	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	TIMM23--RP11-464F9.1	1	2	TIMM23	4468	chr10:51613218:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	633	4	0	0.43	0.0121	0.0242	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	CACO2_LARGE_INTESTINE	0	0.43	0.0363	FALSE	4	2	0	9	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	AP1S3--WDFY1	1	1	AP1S3	1580	chr2:224702165:-	WDFY1	16667	chr2:224782727:-	ONLY_REF_SPLICE	YES	343	289	0.01	0.01	0.0121	0.0121	LOCAL_REARRANGEMENT:-:[17689],AP1S3->adaptor_related_protein_complex_1_sigma_3_subunit,chr2:224616403-224702744:-,WDFY1->WD_repeat_and_FYVE_domain_containing_1,chr2:224720433-224810104:-	CACO2_LARGE_INTESTINE	0.01	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	AP3S1--COMMD10	1	1	AP3S1	1626	chr5:115177803:+	COMMD10	21553	chr5:115469765:+	ONLY_REF_SPLICE	NO	395	106	0.01	0.02	0.0121	0.0121	GTEx&tcga_normals:14/3694=0.38%,AP3S1->adaptor_related_protein_complex_3_sigma_1_subunit,chr5:115177178-115249778:+,COMMD10->COMM_domain_containing_10,chr5:115420688-115748459:+	CACO2_LARGE_INTESTINE	0.01	0.02	0.0242	FALSE	0	0	0	2	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	DDX50--CCAR1	1	1	DDX50	1194	chr10:70661227:+	CCAR1	41005	chr10:70549467:+	ONLY_REF_SPLICE	YES	294	345	0.01	0.01	0.0121	0.0121	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},DDX50->DEAD-box_helicase_50,chr10:70661034-70706603:+,CCAR1->cell_division_cycle_and_apoptosis_regulator_1,chr10:70480769-70552134:+	CACO2_LARGE_INTESTINE	0.01	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	DLEU2--RNASEH2B	1	1	DLEU2	2589	chr13:50655959:-	RNASEH2B	16192	chr13:51501543:+	ONLY_REF_SPLICE	YES	81	91	0.02	0.02	0.0121	0.0121	DLEU2->chr13:50601269-50699856:-,deleted_in_lymphocytic_leukemia_2_(non-protein_coding),RNASEH2B->chr13:51483814-51544592:+,ribonuclease_H2_subunit_B	CACO2_LARGE_INTESTINE	0.02	0.02	0.0242	TRUE	0	1	0	4	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	FGFR2--HSD17B4	1	1	FGFR2	10266	chr10:123298106:-	HSD17B4	63889	chr5:118872118:+	ONLY_REF_SPLICE	YES	87	205	0.02	0.01	0.0121	0.0121	FGFR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr10:123237848-123357972:-,fibroblast_growth_factor_receptor_2,HSD17B4->chr5:118788138-118972894:+,hydroxysteroid_(17-beta)_dehydrogenase_4	CACO2_LARGE_INTESTINE	0.01	0.02	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	NCL--FN1	1	1	NCL	6013	chr2:232326251:-	FN1	57494	chr2:216238134:-	ONLY_REF_SPLICE	YES	2138	7352	0	0	0.0121	0.0121	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},NCL->chr2:232318242-232348352:-,nucleolin,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	CACO2_LARGE_INTESTINE	0	0	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	PROSC--CHMP1A	1	1	PROSC	2996	chr8:37623873:+	CHMP1A	17173	chr16:89713739:-	ONLY_REF_SPLICE	YES	244	630	0.01	0	0.0121	0.0121	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Blood_Vessel=[count:5=pct:1.4],Adrenal_Gland=[count:2=pct:2.4],Skin=[count:2=pct:0.6],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Bladder=[count:1=pct:11.1],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Blood=[count:1=pct:0.6],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=20;pct=0.23%;dist=Adipose_-_Subcutaneous=3,Adrenal_Gland=2,Whole_Blood=2,Colon_-_Sigmoid=2,Artery_-_Tibial=1,Ovary=1,Pancreas=1,Vagina=1,Artery_-_Coronary=1,Pituitary=1,Nerve_-_Tibial=1,Esophagus_-_Mucosa=1,Muscle_-_Skeletal=1,Esophagus_-_Gastroesophageal_Junction=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},PROSC->chr8:37620111-37637283:+,proline_synthetase_co-transcribed_homolog_(bacterial),CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	CACO2_LARGE_INTESTINE	0	0.01	0.0242	FALSE	13	55	3	29	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	PRSS35--ME1	1	1	PRSS35	1220	chr6:84222413:+	ME1	15437	chr6:83963457:-	ONLY_REF_SPLICE	YES	211	526	0.01	0	0.0121	0.0121	GTEx_v2:{count=1;pct=0.01%;dist=Nerve_-_Tibial=1},LOCAL_INVERSION:+:-:[81397],PRSS35->chr6:84222194-84235423:+,protease,_serine_35,ME1->chr6:83920108-84140797:-,malic_enzyme_1	CACO2_LARGE_INTESTINE	0	0.01	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	SS18L1--TAF4	1	1	SS18L1	1124	chr20:60718945:+	TAF4	21561	chr20:60589763:-	ONLY_REF_SPLICE	NO	37	45	0.05	0.04	0.0121	0.0121	GTEx_FI:{Skin=[count:2=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Pancreas=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},{Klijn_CCL:Lung=1},LOCAL_INVERSION:+:-:[77956],SS18L1->Oncogene{Bushman},SS18L1,_nBAF_chromatin_remodeling_complex_subunit,chr20:60718822-60757540:+,TAF4->TATA-box_binding_protein_associated_factor_4,chr20:60528525-60640866:-	CACO2_LARGE_INTESTINE	0.04	0.05	0.0242	TRUE	2	5	0	8	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	TAF9--CSE1L	1	1	TAF9	1357	chr5:68665484:-	CSE1L	13942	chr20:47674990:+	ONLY_REF_SPLICE	YES	62	233	0.03	0.01	0.0121	0.0121	TAF9->TATA-box_binding_protein_associated_factor_9,chr5:68646811-68665840:-,CSE1L->Oncogene{Bushman},chr20:47662849-47713489:+,chromosome_segregation_1_like	CACO2_LARGE_INTESTINE	0.01	0.03	0.0242	FALSE	0	0	0	1	0	FALSE	ACH-000003
CACO2_LARGE_INTESTINE	TNS3--AC091770.3	1	1	TNS3	1508	chr7:47621649:-	AC091770.3	49680	chr7:48700491:-	ONLY_REF_SPLICE	YES	34	0	0.06	1	0.0121	0.0121	TNS3->chr7:47314752-47622156:-,tensin_3,AC091770.3->chr7:48700171-48702901:-	CACO2_LARGE_INTESTINE	0.06	1	0.0242	TRUE	0	0	0	1	0	TRUE	ACH-000003
HPAFII_PANCREAS	MT-ND4--MT-ND4L	3966	35	MT-ND4	1279	chrM:11038:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	62	0	0.98	1	36.5185	0.3223	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.98	1	36.8408	FALSE	344	827	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	ZNF3--PPP1R9A	191	59	ZNF3	7049	chr7:99672758:-	PPP1R9A	33771	chr7:94913330:+	ONLY_REF_SPLICE	YES	49	0	0.84	1	1.7587	0.5433	ZNF3->chr7:99661656-99680171:-,zinc_finger_protein_3,PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A	HPAFII_PANCREAS	0.84	1	2.302	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	CLIC4--TRNP1	152	44	CLIC4	5761	chr1:25153607:+	TRNP1	16151	chr1:27326338:+	ONLY_REF_SPLICE	YES	56	694	0.78	0.22	1.3996	0.4051	CLIC4->Oncogene{Bushman},chloride_intracellular_channel_4,chr1:25071848-25170815:+,TRNP1->TMF1-regulated_nuclear_protein_1,chr1:27320198-27327389:+	HPAFII_PANCREAS	0.22	0.78	1.8047	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	MT-TA--MT-TC	106	8	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.976	0.0737	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HPAFII_PANCREAS	1	1	1.0497	FALSE	462	80	0	856	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND6--MT-TE	77	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.709	0.0368	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAFII_PANCREAS	1	1	0.7458	FALSE	499	1288	110	792	0	FALSE	ACH-000094
HPAFII_PANCREAS	TIMM23B--LINC00843	63	20	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.5801	0.1842	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HPAFII_PANCREAS	0.99	1	0.7643	TRUE	508	994	45	981	0	FALSE	ACH-000094
HPAFII_PANCREAS	IL17RC--MTMR14	51	36	IL17RC	5252	chr3:9965704:+	MTMR14	33238	chr3:9739395:+	ONLY_REF_SPLICE	YES	83	118	0.51	0.42	0.4696	0.3315	IL17RC->chr3:9958758-9975314:+,interleukin_17_receptor_C,MTMR14->chr3:9691117-9744077:+,myotubularin_related_protein_14	HPAFII_PANCREAS	0.42	0.51	0.8011	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	NSFP1--SAMD12	50	24	NSFP1	8226	chr17:44503048:+	SAMD12	24766	chr8:119209971:-	ONLY_REF_SPLICE	YES	65	9	0.53	0.89	0.4604	0.221	NSFP1->N-ethylmaleimide-sensitive_factor_pseudogene_1,chr17:44450221-44564507:+,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	HPAFII_PANCREAS	0.53	0.89	0.6814	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	MT-CO3--MT-ND1	49	1	MT-CO3	1308	chrM:9514:+	MT-ND1	5108	chrM:3630:+	INCL_NON_REF_SPLICE	NO	17784	12763	0	0	0.4512	0.0092	LOCAL_REARRANGEMENT:+:[4945],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HPAFII_PANCREAS	0	0	0.4604	FALSE	12	48	6	3	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	20	103	MT-ND4	1783	chrM:11542:+	MT-ND4L	5611	chrM:10702:+	INCL_NON_REF_SPLICE	YES	7493	1	0.02	0.99	0.1842	0.9484	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.02	0.99	1.1326	FALSE	344	827	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	3	166	MT-ND4	2299	chrM:12058:+	MT-ND4L	5526	chrM:10617:+	INCL_NON_REF_SPLICE	YES	11	2	0.94	0.99	0.0276	1.5285	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.94	0.99	1.5561	FALSE	268	700	35	284	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	5	156	MT-ND4	1149	chrM:10908:+	MT-ND4L	5506	chrM:10597:+	INCL_NON_REF_SPLICE	YES	22	0	0.88	1	0.046	1.4364	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.88	1	1.4824	FALSE	344	826	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND6--MT-TE	38	24	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	7	0	0.9	1	0.3499	0.221	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAFII_PANCREAS	0.9	1	0.5709	FALSE	499	1288	110	792	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	3	163	MT-ND4	1492	chrM:11251:+	MT-ND4L	5388	chrM:10479:+	INCL_NON_REF_SPLICE	YES	643	0	0.21	1	0.0276	1.5009	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.21	1	1.5285	FALSE	344	827	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	3	161	MT-ND4	1503	chrM:11262:+	MT-ND4L	5525	chrM:10616:+	INCL_NON_REF_SPLICE	YES	711	2	0.19	0.99	0.0276	1.4825	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.19	0.99	1.5101	FALSE	344	827	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	3	158	MT-ND4	1159	chrM:10918:+	MT-ND4L	5503	chrM:10594:+	INCL_NON_REF_SPLICE	YES	23	0	0.88	1	0.0276	1.4548	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.88	1	1.4824	FALSE	344	826	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	3	152	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	14	1	0.92	0.99	0.0276	1.3996	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.92	0.99	1.4272	FALSE	344	826	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	3	130	MT-ND4	1083	chrM:10842:+	MT-ND4L	5528	chrM:10619:+	INCL_NON_REF_SPLICE	NO	9	2	0.94	0.99	0.0276	1.197	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.94	0.99	1.2246	FALSE	344	826	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	4	106	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	14	1	0.89	0.99	0.0368	0.976	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.89	0.99	1.0128	FALSE	344	826	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	OR51S1--TP53I11	30	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2762	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HPAFII_PANCREAS	1	1	0.2762	TRUE	402	216	10	229	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	3	107	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	8	2	0.93	0.98	0.0276	0.9852	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.93	0.98	1.0128	FALSE	344	821	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	TIMM23--RP11-464F9.1	28	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	175	3	0.15	0.91	0.2578	0.0276	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HPAFII_PANCREAS	0.15	0.91	0.2854	TRUE	519	3926	326	965	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO2	26	5	MT-ATP6	1158	chrM:8684:+	MT-CO2	4844	chrM:7748:+	INCL_NON_REF_SPLICE	YES	65	1	0.32	0.97	0.2394	0.046	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HPAFII_PANCREAS	0.32	0.97	0.2854	FALSE	59	21	0	114	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND6--MT-TE	25	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2302	0.046	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAFII_PANCREAS	1	1	0.2762	FALSE	499	1288	110	792	0	FALSE	ACH-000094
HPAFII_PANCREAS	LA16c-325D7.1--IFNGR2	23	12	LA16c-325D7.1	1761	chr16:2908659:+	IFNGR2	14474	chr21:34809135:+	ONLY_REF_SPLICE	YES	2	299	0.95	0.1	0.2118	0.1105	LA16c-325D7.1->chr16:2907899-2909727:+,IFNGR2->Oncogene{Bushman},chr21:34775202-34851655:+,interferon_gamma_receptor_2_(interferon_gamma_transducer_1)	HPAFII_PANCREAS	0.1	0.95	0.3223	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	MT-ND6--MT-TE	18	30	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	7	0	0.87	1	0.1657	0.2762	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAFII_PANCREAS	0.87	1	0.4419	FALSE	499	1288	110	792	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	6	55	MT-ND4	1779	chrM:11538:+	MT-ND4L	5643	chrM:10734:+	INCL_NON_REF_SPLICE	YES	7333	0	0.01	1	0.0552	0.5064	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.01	1	0.5616	FALSE	344	827	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-TA--MT-TC	17	2	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1565	0.0184	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HPAFII_PANCREAS	1	1	0.1749	FALSE	462	80	0	856	0	FALSE	ACH-000094
HPAFII_PANCREAS	NIPA2--POLA1	17	0	NIPA2	10455	chr15:23005214:-	POLA1	16214	chrX:24721385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1565	0	GTEx_FI:{Brain=[count:13=pct:2.0],Adipose_Tissue=[count:8=pct:2.7],Colon=[count:6=pct:3.1],Esophagus=[count:6=pct:1.5],Lung=[count:4=pct:2.4],Spleen=[count:4=pct:3.6],Thyroid=[count:3=pct:1.7],Skin=[count:2=pct:0.6],Small_Intestine=[count:2=pct:3.6],Pituitary=[count:2=pct:3.8],Adrenal_Gland=[count:2=pct:2.4],Testis=[count:2=pct:1.9],Nerve=[count:2=pct:1.2],Blood_Vessel=[count:2=pct:0.5],Prostate=[count:1=pct:1.6],Liver=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=708;pct=8.18%;dist=Cells_-_Transformed_fibroblasts=54,Cells_-_EBV-transformed_lymphocytes=38,Thyroid=35,Lung=32,Nerve_-_Tibial=32,Adipose_-_Subcutaneous=27,Esophagus_-_Mucosa=25,Skin_-_Sun_Exposed_(Lower_leg)=24,Adipose_-_Visceral_(Omentum)=24,Esophagus_-_Muscularis=23,Spleen=21,Pituitary=19,Colon_-_Transverse=19,Prostate=18,Colon_-_Sigmoid=17,Brain_-_Amygdala=17,Adrenal_Gland=15,Esophagus_-_Gastroesophageal_Junction=15,Skin_-_Not_Sun_Exposed_(Suprapubic)=15,Heart_-_Atrial_Appendage=15,Brain_-_Nucleus_accumbens_(basal_ganglia)=15,Testis=14,Small_Intestine_-_Terminal_Ileum=13,Brain_-_Caudate_(basal_ganglia)=12,Stomach=11,Artery_-_Coronary=11,Artery_-_Tibial=10,Breast_-_Mammary_Tissue=10,Artery_-_Aorta=10,Whole_Blood=10,Brain_-_Cerebellum=10,Brain_-_Cortex=10,Brain_-_Frontal_Cortex_(BA9)=9,Minor_Salivary_Gland=8,Vagina=7,Brain_-_Hippocampus=6,Liver=6,Brain_-_Anterior_cingulate_cortex_(BA24)=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Uterus=5,Brain_-_Cerebellar_Hemisphere=5,Brain_-_Putamen_(basal_ganglia)=4,Pancreas=4,Muscle_-_Skeletal=4,Heart_-_Left_Ventricle=4,Brain_-_Substantia_nigra=4,Ovary=3,Kidney_-_Cortex=3,Brain_-_Hypothalamus=3,=1},NIPA2->chr15:23004684-23034427:-,non_imprinted_in_Prader-Willi/Angelman_syndrome_2,POLA1->chrX:24712036-25015103:+,polymerase_(DNA)_alpha_1,_catalytic_subunit	HPAFII_PANCREAS	1	1	0.1565	TRUE	46	1352	75	139	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-RNR2	16	1	MT-ATP6	1153	chrM:8679:+	MT-RNR2	5271	chrM:2260:+	INCL_NON_REF_SPLICE	NO	12390	10214	0	0	0.1473	0.0092	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HPAFII_PANCREAS	0	0	0.1565	FALSE	63	17	1	58	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO1	16	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1473	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HPAFII_PANCREAS	1	1	0.1473	FALSE	183	104	9	328	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND1--MT-RNR2	3	50	MT-ND1	1435	chrM:3741:+	MT-RNR2	4964	chrM:1678:+	INCL_NON_REF_SPLICE	YES	68	0	0.44	1	0.0276	0.4604	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HPAFII_PANCREAS	0.44	1	0.488	FALSE	114	26	4	85	0	FALSE	ACH-000094
HPAFII_PANCREAS	NRIP1--AF127936.7	14	6	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	5	0	0.8	1	0.1289	0.0552	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HPAFII_PANCREAS	0.8	1	0.1841	FALSE	292	1546	117	613	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-TA--MT-TC	13	8	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1197	0.0737	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HPAFII_PANCREAS	1	1	0.1934	FALSE	462	80	0	856	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	6	35	MT-ND4	1519	chrM:11278:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	867	0	0.05	1	0.0552	0.3223	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.05	1	0.3775	FALSE	344	827	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	3	46	MT-ND4	1027	chrM:10786:+	MT-ND4L	5484	chrM:10575:+	INCL_NON_REF_SPLICE	YES	1	0	0.98	1	0.0276	0.4236	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.98	1	0.4512	FALSE	344	821	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND6--MT-TE	7	30	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	4	0	0.9	1	0.0645	0.2762	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAFII_PANCREAS	0.9	1	0.3407	FALSE	499	1288	110	792	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND1--MT-RNR2	4	41	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	17	0	0.73	1	0.0368	0.3775	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HPAFII_PANCREAS	0.73	1	0.4143	FALSE	114	26	4	85	0	FALSE	ACH-000094
HPAFII_PANCREAS	LA16c-325D7.1--IFNGR2	13	3	LA16c-325D7.1	1036	chr16:2907934:+	IFNGR2	14474	chr21:34809135:+	ONLY_REF_SPLICE	YES	0	299	1	0.05	0.1197	0.0276	LA16c-325D7.1->chr16:2907899-2909727:+,IFNGR2->Oncogene{Bushman},chr21:34775202-34851655:+,interferon_gamma_receptor_2_(interferon_gamma_transducer_1)	HPAFII_PANCREAS	0.05	1	0.1473	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	MT-ND6--MT-TE	9	18	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0829	0.1657	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAFII_PANCREAS	1	1	0.2486	FALSE	499	1288	110	792	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND1--MT-RNR2	3	41	MT-ND1	1265	chrM:3571:+	MT-RNR2	4967	chrM:1681:+	INCL_NON_REF_SPLICE	YES	15	0	0.75	1	0.0276	0.3775	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HPAFII_PANCREAS	0.75	1	0.4051	FALSE	114	26	4	85	0	FALSE	ACH-000094
HPAFII_PANCREAS	TRRAP--ARPC1A	12	5	TRRAP	49900	chr7:98567914:+	ARPC1A	81957	chr7:98951532:+	ONLY_REF_SPLICE	YES	48	1508	0.26	0.01	0.1105	0.046	TRRAP->chr7:98475556-98610866:+,transformation/transcription_domain_associated_protein,ARPC1A->actin_related_protein_2/3_complex_subunit_1A,chr7:98923521-98985787:+	HPAFII_PANCREAS	0.01	0.26	0.1565	TRUE	0	0	0	1	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	9	16	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	30	0	0.45	1	0.0829	0.1473	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.45	1	0.2302	FALSE	344	826	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	8	20	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	37	0	0.43	1	0.0737	0.1842	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.43	1	0.2579	FALSE	344	826	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-CO1--MT-ND1	12	3	MT-CO1	1699	chrM:6602:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	NO	27773	8909	0	0	0.1105	0.0276	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HPAFII_PANCREAS	0	0	0.1381	FALSE	39	30	6	19	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-RNR2	12	1	MT-ATP6	1146	chrM:8672:+	MT-RNR2	5284	chrM:2273:+	INCL_NON_REF_SPLICE	YES	11842	10086	0	0	0.1105	0.0092	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HPAFII_PANCREAS	0	0	0.1197	FALSE	63	17	1	58	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND6--MT-TE	6	24	MT-ND6	1336	chrM:14338:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	6	0	0.83	1	0.0552	0.221	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAFII_PANCREAS	0.83	1	0.2762	FALSE	499	1288	110	792	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	6	23	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	YES	6	1	0.83	0.97	0.0552	0.2118	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.83	0.97	0.267	FALSE	344	821	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-RNR2	11	0	MT-ATP6	1098	chrM:8624:+	MT-RNR2	5233	chrM:2222:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1013	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HPAFII_PANCREAS	1	1	0.1013	FALSE	63	17	1	58	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND6--MT-TE	4	28	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	7	0	0.82	1	0.0368	0.2578	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAFII_PANCREAS	0.82	1	0.2946	FALSE	499	1288	110	792	0	FALSE	ACH-000094
HPAFII_PANCREAS	RP11-114H23.1--RP11-114H23.2	9	8	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	2	0	0.89	1	0.0829	0.0737	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HPAFII_PANCREAS	0.89	1	0.1566	FALSE	81	155	12	160	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO2	9	7	MT-ATP6	1158	chrM:8684:+	MT-CO2	4834	chrM:7738:+	INCL_NON_REF_SPLICE	YES	65	1	0.2	0.94	0.0829	0.0645	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HPAFII_PANCREAS	0.2	0.94	0.1474	FALSE	59	21	0	114	0	FALSE	ACH-000094
HPAFII_PANCREAS	EXT1--LRRC37A	9	6	EXT1	2769	chr8:119122324:-	LRRC37A	29267	chr17:44377160:+	ONLY_REF_SPLICE	YES	142	4	0.1	0.79	0.0829	0.0552	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	HPAFII_PANCREAS	0.1	0.79	0.1381	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	3	30	MT-ND4	1093	chrM:10852:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	11	0	0.75	1	0.0276	0.2762	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.75	1	0.3038	FALSE	344	826	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-TA--MT-TC	8	9	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0737	0.0829	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HPAFII_PANCREAS	1	1	0.1566	FALSE	462	80	0	856	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	5	20	MT-ND4	1531	chrM:11290:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	974	0	0.03	1	0.046	0.1842	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.03	1	0.2302	FALSE	344	827	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	RAB43--LINC00635	7	11	RAB43	2516	chr3:128840129:-	LINC00635	22012	chr3:107576049:-	ONLY_REF_SPLICE	YES	41	1	0.31	0.95	0.0645	0.1013	RAB43->RAB43,_member_RAS_oncogene_family,chr3:128806412-128841644:-,LINC00635->chr3:107559075-107600847:-,long_intergenic_non-protein_coding_RNA_635	HPAFII_PANCREAS	0.31	0.95	0.1658	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO1	9	2	MT-ATP6	1149	chrM:8675:+	MT-CO1	5219	chrM:6441:+	INCL_NON_REF_SPLICE	YES	12139	25907	0	0	0.0829	0.0184	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HPAFII_PANCREAS	0	0	0.1013	FALSE	183	104	9	328	0	FALSE	ACH-000094
HPAFII_PANCREAS	IFI27--MT-ND4L	9	1	IFI27	8929	chr14:94582869:+	MT-ND4L	12095	chrM:10471:+	INCL_NON_REF_SPLICE	YES	1028	0	0.01	1	0.0829	0.0092	IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.01	1	0.0921	FALSE	0	0	0	13	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-RNR2	9	1	MT-ATP6	1115	chrM:8641:+	MT-RNR2	4721	chrM:1710:+	INCL_NON_REF_SPLICE	YES	10488	0	0	1	0.0829	0.0092	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HPAFII_PANCREAS	0	1	0.0921	FALSE	63	17	1	58	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND6--MT-TE	3	25	MT-ND6	1199	chrM:14475:-	MT-TE	4565	chrM:14703:-	INCL_NON_REF_SPLICE	YES	6	0	0.82	1	0.0276	0.2302	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAFII_PANCREAS	0.82	1	0.2578	FALSE	499	1288	110	792	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO1	9	0	MT-ATP6	1106	chrM:8632:+	MT-CO1	5169	chrM:6391:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0829	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HPAFII_PANCREAS	1	1	0.0829	FALSE	183	104	9	328	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND6--MT-TE	3	24	MT-ND6	1265	chrM:14409:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	5	0	0.84	1	0.0276	0.221	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAFII_PANCREAS	0.84	1	0.2486	FALSE	499	1288	110	792	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-CO1--MT-ND1	8	3	MT-CO1	1653	chrM:6556:+	MT-ND1	5761	chrM:3525:+	INCL_NON_REF_SPLICE	YES	28069	9455	0	0	0.0737	0.0276	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HPAFII_PANCREAS	0	0	0.1013	FALSE	39	30	6	19	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO1	8	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0737	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HPAFII_PANCREAS	1	1	0.0737	FALSE	183	104	9	328	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-CO1--MT-ND1	7	3	MT-CO1	1653	chrM:6556:+	MT-ND1	5749	chrM:3513:+	INCL_NON_REF_SPLICE	YES	28069	8909	0	0	0.0645	0.0276	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HPAFII_PANCREAS	0	0	0.0921	FALSE	39	30	6	19	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	6	7	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	68	0	0.16	1	0.0552	0.0645	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.16	1	0.1197	FALSE	344	827	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO2	6	6	MT-ATP6	1144	chrM:8670:+	MT-CO2	4830	chrM:7734:+	INCL_NON_REF_SPLICE	YES	67	1	0.15	0.92	0.0552	0.0552	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HPAFII_PANCREAS	0.15	0.92	0.1104	FALSE	59	21	0	114	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-RNR2	7	1	MT-ATP6	1131	chrM:8657:+	MT-RNR2	5291	chrM:2280:+	INCL_NON_REF_SPLICE	YES	10708	10445	0	0	0.0645	0.0092	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HPAFII_PANCREAS	0	0	0.0737	FALSE	63	17	1	58	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND1--MT-RNR2	6	5	MT-ND1	1264	chrM:3570:+	MT-RNR2	5538	chrM:2252:+	INCL_NON_REF_SPLICE	YES	15	10080	0.42	0	0.0552	0.046	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HPAFII_PANCREAS	0	0.42	0.1012	FALSE	120	26	5	87	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO1	7	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0645	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HPAFII_PANCREAS	1	1	0.0645	FALSE	183	104	9	328	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO1	7	0	MT-ATP6	1108	chrM:8634:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0645	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HPAFII_PANCREAS	1	1	0.0645	FALSE	183	104	9	328	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	3	16	MT-ND4	1168	chrM:10927:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	24	0	0.44	1	0.0276	0.1473	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.44	1	0.1749	FALSE	344	826	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO2	5	7	MT-ATP6	1158	chrM:8684:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	65	1	0.16	0.92	0.046	0.0645	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HPAFII_PANCREAS	0.16	0.92	0.1105	FALSE	59	21	0	114	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	5	7	MT-ND4	1195	chrM:10954:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	31	0	0.28	1	0.046	0.0645	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	0.28	1	0.1105	FALSE	344	826	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	NRIP1--AF127936.7	4	11	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	27	0	0.36	1	0.0368	0.1013	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HPAFII_PANCREAS	0.36	1	0.1381	FALSE	125	705	46	456	0	FALSE	ACH-000094
HPAFII_PANCREAS	C5orf56--SLC22A5	5	6	C5orf56	3564	chr5:131785381:+	SLC22A5	24151	chr5:131719839:+	ONLY_REF_SPLICE	YES	12	38	0.48	0.22	0.046	0.0552	{Klijn_CCL:Kidney=1},LOCAL_REARRANGEMENT:+:[15022],C5orf56->chr5:131746328-131811736:+,chromosome_5_open_reading_frame_56,SLC22A5->chr5:131705444-131731306:+,solute_carrier_family_22_member_5	HPAFII_PANCREAS	0.22	0.48	0.1012	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	NRIP1--AF127936.7	3	14	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	44	0	0.28	1	0.0276	0.1289	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HPAFII_PANCREAS	0.28	1	0.1565	FALSE	164	806	69	479	0	FALSE	ACH-000094
HPAFII_PANCREAS	RP11-96H19.1--RP11-446N19.1	5	6	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	1	0.79	0.92	0.046	0.0552	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HPAFII_PANCREAS	0.79	0.92	0.1012	FALSE	515	4851	409	746	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO1	6	0	MT-ATP6	1132	chrM:8658:+	MT-CO1	5210	chrM:6432:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HPAFII_PANCREAS	1	1	0.0552	FALSE	183	104	9	328	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND6--MT-TE	6	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAFII_PANCREAS	1	1	0.0552	FALSE	499	1288	110	792	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND6--MT-TE	6	0	MT-ND6	1031	chrM:14643:-	MT-TE	4590	chrM:14678:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0552	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAFII_PANCREAS	1	1	0.0552	FALSE	499	1288	110	792	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-TA--MT-TC	4	8	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0.0737	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HPAFII_PANCREAS	1	1	0.1105	FALSE	462	80	0	856	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO2	5	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4818	chrM:7722:+	INCL_NON_REF_SPLICE	YES	43	1	0.12	0.86	0.046	0.0092	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HPAFII_PANCREAS	0.12	0.86	0.0552	FALSE	59	21	0	114	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-RNR2	5	1	MT-ATP6	1144	chrM:8670:+	MT-RNR2	5283	chrM:2272:+	INCL_NON_REF_SPLICE	YES	11829	10105	0	0	0.046	0.0092	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HPAFII_PANCREAS	0	0	0.0552	FALSE	63	17	1	58	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND1--MT-RNR2	4	5	MT-ND1	1264	chrM:3570:+	MT-RNR2	5687	chrM:2401:+	INCL_NON_REF_SPLICE	YES	15	11584	0.38	0	0.0368	0.046	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HPAFII_PANCREAS	0	0.38	0.0828	FALSE	120	26	5	87	0	FALSE	ACH-000094
HPAFII_PANCREAS	SCARB1--UBC	5	1	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	224	203	0.03	0.03	0.046	0.0092	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	HPAFII_PANCREAS	0.03	0.03	0.0552	TRUE	55	66	6	101	0	FALSE	ACH-000094
HPAFII_PANCREAS	F3--S100A6	5	0	F3	1194	chr1:95007163:-	S100A6	11318	chr1:153508467:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.046	0	F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HPAFII_PANCREAS	1	1	0.046	TRUE	0	0	0	3	0	TRUE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO1	3	7	MT-ATP6	1477	chrM:9003:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	9678	24480	0	0	0.0276	0.0645	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HPAFII_PANCREAS	0	0	0.0921	FALSE	183	104	9	328	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO1	3	7	MT-ATP6	1516	chrM:9042:+	MT-CO1	5212	chrM:6434:+	INCL_NON_REF_SPLICE	YES	6963	25712	0	0	0.0276	0.0645	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HPAFII_PANCREAS	0	0	0.0921	FALSE	183	104	9	328	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO1	3	6	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	4040	28234	0	0	0.0276	0.0552	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HPAFII_PANCREAS	0	0	0.0828	FALSE	183	104	9	328	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-RNR2	4	2	MT-ATP6	1555	chrM:9081:+	MT-RNR2	5408	chrM:2397:+	INCL_NON_REF_SPLICE	YES	4047	11388	0	0	0.0368	0.0184	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HPAFII_PANCREAS	0	0	0.0552	FALSE	63	17	1	58	0	FALSE	ACH-000094
HPAFII_PANCREAS	SNRK--ITPR2	4	2	SNRK	4971	chr3:43345284:+	ITPR2	60501	chr12:26648193:-	ONLY_REF_SPLICE	YES	13	1	0.32	0.86	0.0368	0.0184	SNRK->SNF_related_kinase,chr3:43328004-43466256:+,ITPR2->chr12:26490342-26986131:-,inositol_1,4,5-trisphosphate_receptor_type_2	HPAFII_PANCREAS	0.32	0.86	0.0552	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	ASPH--FUS	4	1	ASPH	8053	chr8:62593527:-	FUS	55904	chr16:31199646:+	ONLY_REF_SPLICE	YES	3804	677	0	0.01	0.0368	0.0092	GTEx&tcga_normals:1/3694=0.03%,GTEx:0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Whole_Blood=1},ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	HPAFII_PANCREAS	0	0.01	0.046	FALSE	0	0	0	4	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO1	3	5	MT-ATP6	1158	chrM:8684:+	MT-CO1	4715	chrM:5937:+	INCL_NON_REF_SPLICE	YES	12873	0	0	1	0.0276	0.046	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HPAFII_PANCREAS	0	1	0.0736	FALSE	182	97	9	327	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO1	3	5	MT-ATP6	1153	chrM:8679:+	MT-CO1	4732	chrM:5954:+	INCL_NON_REF_SPLICE	YES	12336	0	0	1	0.0276	0.046	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HPAFII_PANCREAS	0	1	0.0736	FALSE	182	97	9	327	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO2	4	1	MT-ATP6	1120	chrM:8646:+	MT-CO2	4828	chrM:7732:+	INCL_NON_REF_SPLICE	YES	48	1	0.09	0.83	0.0368	0.0092	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HPAFII_PANCREAS	0.09	0.83	0.046	FALSE	59	21	0	114	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO2	3	5	MT-ATP6	1187	chrM:8713:+	MT-CO2	4937	chrM:7841:+	INCL_NON_REF_SPLICE	YES	77	2	0.09	0.8	0.0276	0.046	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HPAFII_PANCREAS	0.09	0.8	0.0736	FALSE	59	21	0	114	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO1	4	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HPAFII_PANCREAS	1	1	0.0368	FALSE	183	104	9	328	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-RNR2	4	0	MT-ATP6	1110	chrM:8636:+	MT-RNR2	5247	chrM:2236:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HPAFII_PANCREAS	1	1	0.0368	FALSE	63	17	1	58	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-CO1--MT-ND1	4	0	MT-CO1	1585	chrM:6488:+	MT-ND1	6056	chrM:3820:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HPAFII_PANCREAS	1	1	0.0368	FALSE	39	30	6	19	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	4	0	MT-ND4	1061	chrM:10820:+	MT-ND4L	5648	chrM:10739:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	1	1	0.0368	FALSE	344	821	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0368	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAFII_PANCREAS	1	1	0.0368	FALSE	499	1288	110	792	0	FALSE	ACH-000094
HPAFII_PANCREAS	NDUFA4--PHF14	4	0	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0368	0	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HPAFII_PANCREAS	1	1	0.0368	TRUE	19	32	3	60	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-RNR2	3	3	MT-ATP6	1158	chrM:8684:+	MT-RNR2	4849	chrM:1838:+	INCL_NON_REF_SPLICE	YES	12926	7856	0	0	0.0276	0.0276	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HPAFII_PANCREAS	0	0	0.0552	FALSE	63	17	1	58	0	FALSE	ACH-000094
HPAFII_PANCREAS	RP11-96H19.1--RP11-446N19.1	2	7	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.75	1	0.0184	0.0645	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HPAFII_PANCREAS	0.75	1	0.0829	FALSE	407	2205	196	549	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-TA--MT-TC	3	2	MT-TA	1059	chrM:5597:-	MT-TC	4112	chrM:5784:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0.0184	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HPAFII_PANCREAS	1	1	0.046	FALSE	462	80	0	856	0	FALSE	ACH-000094
HPAFII_PANCREAS	RP11-680G10.1--GSE1	3	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	45	1	0.1	0.0276	0.0184	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HPAFII_PANCREAS	0.1	1	0.046	TRUE	465	1949	224	605	0	FALSE	ACH-000094
HPAFII_PANCREAS	ZNF3--PPP1R9A	3	2	ZNF3	6642	chr7:99673165:-	PPP1R9A	35084	chr7:94915518:+	ONLY_REF_SPLICE	YES	80	12	0.06	0.29	0.0276	0.0184	ZNF3->chr7:99661656-99680171:-,zinc_finger_protein_3,PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A	HPAFII_PANCREAS	0.06	0.29	0.046	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	CMTM8--CMTM7	3	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	147	182	0.03	0.02	0.0276	0.0092	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	HPAFII_PANCREAS	0.02	0.03	0.0368	FALSE	118	557	29	88	0	FALSE	ACH-000094
HPAFII_PANCREAS	F3--S100A6	3	1	F3	1208	chr1:95007149:-	S100A6	11335	chr1:153508450:-	INCL_NON_REF_SPLICE	YES	2489	9	0	0.31	0.0276	0.0092	F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HPAFII_PANCREAS	0	0.31	0.0368	FALSE	0	0	0	3	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO1	3	1	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	12873	27913	0	0	0.0276	0.0092	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HPAFII_PANCREAS	0	0	0.0368	FALSE	183	104	9	328	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO2	3	1	MT-ATP6	1122	chrM:8648:+	MT-CO2	4832	chrM:7736:+	INCL_NON_REF_SPLICE	YES	52	1	0.07	0.8	0.0276	0.0092	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HPAFII_PANCREAS	0.07	0.8	0.0368	FALSE	59	21	0	114	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO2	3	1	MT-ATP6	1108	chrM:8634:+	MT-CO2	4817	chrM:7721:+	INCL_NON_REF_SPLICE	YES	43	1	0.09	0.8	0.0276	0.0092	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HPAFII_PANCREAS	0.09	0.8	0.0368	FALSE	59	21	0	114	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO2	3	1	MT-ATP6	1123	chrM:8649:+	MT-CO2	4811	chrM:7715:+	INCL_NON_REF_SPLICE	YES	51	1	0.07	0.8	0.0276	0.0092	LOCAL_REARRANGEMENT:+:[258],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO2->chrM:7586-8269:+,mitochondrially_encoded_cytochrome_c_oxidase_II	HPAFII_PANCREAS	0.07	0.8	0.0368	FALSE	59	21	0	114	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-RNR2	3	1	MT-ATP6	1098	chrM:8624:+	MT-RNR2	4705	chrM:1694:+	INCL_NON_REF_SPLICE	YES	9443	0	0	1	0.0276	0.0092	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HPAFII_PANCREAS	0	1	0.0368	FALSE	63	17	1	58	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-CO1--MT-ND1	3	1	MT-CO1	1316	chrM:6219:+	MT-ND1	5565	chrM:3329:+	INCL_NON_REF_SPLICE	YES	21954	0	0	1	0.0276	0.0092	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HPAFII_PANCREAS	0	1	0.0368	FALSE	39	29	6	19	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND6--MT-TE	3	1	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0.0092	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAFII_PANCREAS	1	1	0.0368	FALSE	499	1288	110	792	0	FALSE	ACH-000094
HPAFII_PANCREAS	IGFBP6--MT-CO3	3	0	IGFBP6	1271	chr12:53491490:+	MT-CO3	8557	chrM:9240:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	IGFBP6->Oncogene{Bushman},chr12:53491220-53496129:+,insulin_like_growth_factor_binding_protein_6,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HPAFII_PANCREAS	1	1	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000094
HPAFII_PANCREAS	IL17RC--MTMR14	1	8	IL17RC	5252	chr3:9965704:+	MTMR14	36757	chr3:9743474:+	ONLY_REF_SPLICE	NO	83	127	0.1	0.07	0.0092	0.0737	IL17RC->chr3:9958758-9975314:+,interleukin_17_receptor_C,MTMR14->chr3:9691117-9744077:+,myotubularin_related_protein_14	HPAFII_PANCREAS	0.07	0.1	0.0829	TRUE	0	0	0	1	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO1	3	0	MT-ATP6	1082	chrM:8608:+	MT-CO1	5379	chrM:6601:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HPAFII_PANCREAS	1	1	0.0276	FALSE	183	104	9	328	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5332	chrM:6554:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HPAFII_PANCREAS	1	1	0.0276	FALSE	183	104	9	328	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ATP6--MT-RNR2	3	0	MT-ATP6	1078	chrM:8604:+	MT-RNR2	5293	chrM:2282:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	LOCAL_REARRANGEMENT:+:[5298],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HPAFII_PANCREAS	1	1	0.0276	FALSE	63	17	1	58	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-CO1--MT-ND1	3	0	MT-CO1	1699	chrM:6602:+	MT-ND1	6048	chrM:3812:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	LOCAL_REARRANGEMENT:+:[1642],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HPAFII_PANCREAS	1	1	0.0276	FALSE	39	30	6	19	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-CO3--MT-ND1	3	0	MT-CO3	1153	chrM:9359:+	MT-ND1	4992	chrM:3514:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	LOCAL_REARRANGEMENT:+:[4945],MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1	HPAFII_PANCREAS	1	1	0.0276	FALSE	12	48	6	3	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND4--MT-ND4L	3	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HPAFII_PANCREAS	1	1	0.0276	FALSE	344	821	44	306	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HPAFII_PANCREAS	1	1	0.0276	FALSE	499	1288	110	792	0	FALSE	ACH-000094
HPAFII_PANCREAS	MT-ND6--MTAP	3	0	MT-ND6	1318	chrM:14356:-	MTAP	17101	chr9:21862130:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0276	0	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase	HPAFII_PANCREAS	1	1	0.0276	FALSE	0	0	0	1	0	FALSE	ACH-000094
HPAFII_PANCREAS	PSMA5--AKNAD1	3	0	PSMA5	1139	chr1:109968924:-	AKNAD1	30371	chr1:109366310:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0276	0	PSMA5->Oncogene{Bushman},chr1:109941653-109969062:-,proteasome_subunit_alpha_5,AKNAD1->AKNA_domain_containing_1,chr1:109358520-109506106:-	HPAFII_PANCREAS	1	1	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	NCOR2--UBC	2	3	NCOR2	18277	chr12:124904503:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	219	203	0.02	0.02	0.0184	0.0276	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HPAFII_PANCREAS	0.02	0.02	0.046	TRUE	52	148	13	33	0	FALSE	ACH-000094
HPAFII_PANCREAS	SAMD5--SASH1	2	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	9	2	0.25	0.6	0.0184	0.0092	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	HPAFII_PANCREAS	0.25	0.6	0.0276	TRUE	53	396	64	110	0	FALSE	ACH-000094
HPAFII_PANCREAS	AC027763.2--TBC1D15	2	0	AC027763.2	3633	chr17:6905803:-	TBC1D15	32501	chr12:72307606:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	AC027763.2->chr17:6779954-6915668:-,TBC1D15->TBC1_domain_family_member_15,chr12:72233487-72320629:+	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	ARRDC1--NELFB	2	0	ARRDC1	1182	chr9:140500287:+	NELFB	16744	chr9:140166533:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	ARRDC1->arrestin_domain_containing_1,chr9:140500106-140509812:+,NELFB->chr9:140149625-140167998:+,negative_elongation_factor_complex_member_B	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	BLCAP--GTF2E1	2	0	BLCAP	5995	chr20:36147634:-	GTF2E1	19206	chr3:120489575:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	BLCAP->Oncogene{Bushman},bladder_cancer_associated_protein,chr20:36120874-36156333:-,GTF2E1->chr3:120461484-120501916:+,general_transcription_factor_IIE_subunit_1	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	BRK1--TM7SF3	2	0	BRK1	1228	chr3:10157503:+	TM7SF3	16105	chr12:27135792:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	BRK1->BRICK1,_SCAR/WAVE_actin_nucleating_complex_subunit,chr3:10157276-10168874:+,TM7SF3->chr12:27126128-27167367:-,transmembrane_7_superfamily_member_3	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	CYP24A1--TPT1	2	0	CYP24A1	10936	chr20:52773708:-	TPT1	20404	chr13:45911523:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	CYP24A1->chr20:52769988-52790512:-,cytochrome_P450_family_24_subfamily_A_member_1,TPT1->chr13:45911008-45915505:-,tumor_protein,_translationally-controlled_1	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	EIF3E--EIF3H	2	0	EIF3E	6301	chr8:109260842:-	EIF3H	33964	chr8:117738411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	GTEx_v2:{count=1;pct=0.01%;dist=Ovary=1},EIF3E->Oncogene{Bushman},chr8:109213445-109447562:-,eukaryotic_translation_initiation_factor_3_subunit_E,EIF3H->chr8:117654369-117779164:-,eukaryotic_translation_initiation_factor_3_subunit_H	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	EXT1--LRRC37A	1	4	EXT1	2769	chr8:119122324:-	LRRC37A	30339	chr17:44380004:+	ONLY_REF_SPLICE	NO	142	6	0.03	0.45	0.0092	0.0368	EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,LRRC37A->chr17:44370099-44415160:+,leucine_rich_repeat_containing_37A	HPAFII_PANCREAS	0.03	0.45	0.046	TRUE	0	0	0	1	0	FALSE	ACH-000094
HPAFII_PANCREAS	LEKR1--RP11-114M1.2	2	0	LEKR1	3721	chr3:156547166:+	RP11-114M1.2	24905	chr3:177340491:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	LEKR1->chr3:156543270-156763918:+,leucine,_glutamate_and_lysine_rich_1,RP11-114M1.2->chr3:177339170-177346075:-	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	MUC20--MTX2	2	0	MUC20	1202	chr3:195447954:+	MTX2	20112	chr2:177161588:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	MUC20->chr3:195447753-195467994:+,mucin_20,_cell_surface_associated,MTX2->chr2:177134123-177202753:+,metaxin_2	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	MYO1C--CCND1	2	0	MYO1C	1400	chr17:1395707:-	CCND1	30230	chr11:69462762:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	MYO1C->chr17:1367392-1396106:-,myosin_IC,CCND1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:69455855-69469242:+,cyclin_D1	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	NQO1--RPS27A	2	0	NQO1	2684	chr16:69752273:-	RPS27A	13276	chr2:55459944:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	NQO1->NAD(P)H_quinone_dehydrogenase_1,Oncogene{Bushman},chr16:69740899-69760854:-,RPS27A->chr2:55459039-55462989:+,ribosomal_protein_S27a	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	NR5A2--FAM192A	2	0	NR5A2	14933	chr1:200090083:+	FAM192A	28387	chr16:57207781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	NR5A2->chr1:199996730-200146552:+,nuclear_receptor_subfamily_5_group_A_member_2,FAM192A->chr16:57186378-57220028:-,family_with_sequence_similarity_192_member_A	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	RP11-613M10.8--DSG2	2	0	RP11-613M10.8	2340	chr9:37588750:-	DSG2	20494	chr18:29099766:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	RP11-613M10.8->chr9:37512544-37592466:-,DSG2->Oncogene{Bushman},chr18:29078006-29128971:+,desmoglein_2	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	SGK2--LRRC8A	2	0	SGK2	1192	chr20:42187799:+	LRRC8A	26732	chr9:131678375:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	SGK2->SGK2,_serine/threonine_kinase_2,chr20:42187608-42216877:+,LRRC8A->chr9:131644391-131680318:+,leucine-rich_repeat_containing_8_family_member_A	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	YBEY--PARK7	2	0	YBEY	1787	chr21:47707037:+	PARK7	13542	chr1:8029405:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	YBEY->chr21:47706251-47717665:+,ybeY_metallopeptidase_(putative),PARK7->Parkinsonism_associated_deglycase,chr1:8014351-8045565:+	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	ZNF20--SH3KBP1	2	0	ZNF20	4162	chr19:12246584:-	SH3KBP1	17768	chrX:19764559:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0184	0	ZNF20->chr19:12203658-12251222:-,zinc_finger_protein_20,SH3KBP1->SH3_domain_containing_kinase_binding_protein_1,chrX:19552093-19905719:-	HPAFII_PANCREAS	1	1	0.0184	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	NCOR2--UBC	1	3	NCOR2	21671	chr12:124882665:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	NO	242	203	0.02	0.02	0.0092	0.0276	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	HPAFII_PANCREAS	0.02	0.02	0.0368	TRUE	30	26	0	16	0	FALSE	ACH-000094
HPAFII_PANCREAS	RP11-680G10.1--GSE1	1	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	19	1	0.14	0.0092	0.0184	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HPAFII_PANCREAS	0.14	1	0.0276	TRUE	458	1351	185	561	0	FALSE	ACH-000094
HPAFII_PANCREAS	ZNF3--PPP1R9A	1	2	ZNF3	7049	chr7:99672758:-	PPP1R9A	35084	chr7:94915518:+	ONLY_REF_SPLICE	NO	49	12	0.06	0.2	0.0092	0.0184	ZNF3->chr7:99661656-99680171:-,zinc_finger_protein_3,PPP1R9A->chr7:94536514-94925727:+,protein_phosphatase_1_regulatory_subunit_9A	HPAFII_PANCREAS	0.06	0.2	0.0276	TRUE	0	0	0	1	0	TRUE	ACH-000094
HPAFII_PANCREAS	ASPH--ANXA11	1	1	ASPH	8053	chr8:62593527:-	ANXA11	55011	chr10:81932625:-	ONLY_REF_SPLICE	YES	3805	741	0	0	0.0092	0.0092	ASPH->aspartate_beta-hydroxylase,chr8:62413116-62627155:-,ANXA11->annexin_A11,chr10:81910645-81965328:-	HPAFII_PANCREAS	0	0	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000094
HPAFII_PANCREAS	F3--SPG7	1	1	F3	1264	chr1:95007093:-	SPG7	29909	chr16:89611056:+	ONLY_REF_SPLICE	NO	2664	107	0	0.02	0.0092	0.0092	GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Adipose_-_Subcutaneous=1},{Klijn_CCL:Head-Neck=2,Breast=1},F3->chr1:94994781-95007356:-,coagulation_factor_III,_tissue_factor,SPG7->SPG7,_paraplegin_matrix_AAA_peptidase_subunit,chr16:89557325-89624176:+	HPAFII_PANCREAS	0	0.02	0.0184	FALSE	0	0	0	8	0	FALSE	ACH-000094
HPAFII_PANCREAS	FERMT1--CSDE1	1	1	FERMT1	7455	chr20:6090945:-	CSDE1	32342	chr1:115282346:-	ONLY_REF_SPLICE	YES	550	587	0	0	0.0092	0.0092	FERMT1->chr20:6055492-6104191:-,fermitin_family_member_1,CSDE1->chr1:115259534-115301297:-,cold_shock_domain_containing_E1	HPAFII_PANCREAS	0	0	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000094
HPAFII_PANCREAS	HS2ST1--SEP15	1	1	HS2ST1	1513	chr1:87380843:+	SEP15	26013	chr1:87369131:-	ONLY_REF_SPLICE	YES	84	185	0.02	0.01	0.0092	0.0092	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	HPAFII_PANCREAS	0.01	0.02	0.0184	FALSE	0	2	0	9	0	FALSE	ACH-000094
HPAFII_PANCREAS	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	5	11	0.29	0.15	0.0092	0.0092	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HPAFII_PANCREAS	0.15	0.29	0.0184	FALSE	25	145	6	90	0	FALSE	ACH-000094
HPAFII_PANCREAS	PTGES3--ERRFI1	1	1	PTGES3	1378	chr12:57081782:-	ERRFI1	13609	chr1:8075752:-	ONLY_REF_SPLICE	NO	1974	500	0	0	0.0092	0.0092	PTGES3->chr12:57057127-57082159:-,prostaglandin_E_synthase_3,ERRFI1->ArcherDX_panel,ERBB_receptor_feedback_inhibitor_1,FoundationOne_panel,Oncogene{Bushman},chr1:8064464-8086368:-	HPAFII_PANCREAS	0	0	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000094
HPAFII_PANCREAS	RALB--EPB41L5	1	1	RALB	4200	chr2:121036354:+	EPB41L5	17204	chr2:120830754:+	ONLY_REF_SPLICE	YES	656	76	0	0.03	0.0092	0.0092	LOCAL_REARRANGEMENT:+:[60945],RALB->Oncogene{Bushman},chr2:120997640-121052289:+,v-ral_simian_leukemia_viral_oncogene_homolog_B,EPB41L5->chr2:120770581-120936695:+,erythrocyte_membrane_protein_band_4.1_like_5	HPAFII_PANCREAS	0	0.03	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000094
HPAFII_PANCREAS	RP11-349A22.5--PSMA3	1	1	RP11-349A22.5	10690	chr14:58740697:-	PSMA3	22204	chr14:58718842:+	ONLY_REF_SPLICE	YES	32	1005	0.06	0	0.0092	0.0092	NEIGHBORS_OVERLAP:-:+:[6647],RP11-349A22.5->chr14:58732083-58764852:-,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	HPAFII_PANCREAS	0	0.06	0.0184	FALSE	0	0	0	3	0	FALSE	ACH-000094
HPAFII_PANCREAS	RP5-1158E12.3--LARS	1	1	RP5-1158E12.3	3112	chrX:45708809:-	LARS	25822	chr5:145519824:-	ONLY_REF_SPLICE	NO	7	140	0.22	0.01	0.0092	0.0092	RP5-1158E12.3->chrX:45707328-45710920:-,LARS->chr5:145492601-145562223:-,leucyl-tRNA_synthetase	HPAFII_PANCREAS	0.01	0.22	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000094
HPAFII_PANCREAS	SLC22A5--HSPA4	1	1	SLC22A5	1614	chr5:131706057:+	HSPA4	27556	chr5:132406066:+	ONLY_REF_SPLICE	YES	22	323	0.08	0.01	0.0092	0.0092	SLC22A5->chr5:131705444-131731306:+,solute_carrier_family_22_member_5,HSPA4->chr5:132387654-132442141:+,heat_shock_protein_family_A_(Hsp70)_member_4	HPAFII_PANCREAS	0.01	0.08	0.0184	FALSE	0	0	0	1	0	FALSE	ACH-000094
GMS10_CENTRAL_NERVOUS_SYSTEM	PPP5C--HIF3A	119	39	PPP5C	4437	chr19:46879831:+	HIF3A	35347	chr19:46838162:+	ONLY_REF_SPLICE	YES	155	0	0.5	1	1.2489	0.4093	LOCAL_REARRANGEMENT:+:[3561],PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,HIF3A->chr19:46800303-46846690:+,hypoxia_inducible_factor_3_alpha_subunit	GMS10_CENTRAL_NERVOUS_SYSTEM	0.5	1	1.6582	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	TIMM23B--LINC00843	75	23	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.98	0.7871	0.2414	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	GMS10_CENTRAL_NERVOUS_SYSTEM	0.98	1	1.0285	TRUE	508	994	45	981	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	DNAJC13--PPARGC1A	54	20	DNAJC13	44999	chr3:132233514:+	PPARGC1A	82578	chr4:23797548:-	ONLY_REF_SPLICE	YES	120	13	0.38	0.85	0.5667	0.2099	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,PPARGC1A->PPARG_coactivator_1_alpha,chr4:23756664-23905712:-	GMS10_CENTRAL_NERVOUS_SYSTEM	0.38	0.85	0.7766	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	HECTD4--TMPO	49	15	HECTD4	43974	chr12:112664447:-	TMPO	84454	chr12:98921664:+	ONLY_REF_SPLICE	YES	25	749	0.72	0.08	0.5143	0.1574	HECTD4->HECT_domain_E3_ubiquitin_protein_ligase_4,chr12:112597992-112819896:-,TMPO->chr12:98909290-98944157:+,thymopoietin	GMS10_CENTRAL_NERVOUS_SYSTEM	0.08	0.72	0.6717	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	HNRNPK--MT-ND4	51	0	HNRNPK	7005	chr9:86588865:-	MT-ND4	16282	chrM:11169:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5353	0	HNRNPK->Oncogene{Bushman},chr9:86582998-86595569:-,heterogeneous_nuclear_ribonucleoprotein_K,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.5353	FALSE	0	0	0	2	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	OR51S1--TP53I11	51	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5353	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.5353	TRUE	402	216	10	229	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	TIMM23--RP11-464F9.1	49	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	182	3	0.22	0.94	0.5143	0.021	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	GMS10_CENTRAL_NERVOUS_SYSTEM	0.22	0.94	0.5353	TRUE	519	3926	326	965	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	GABPB1--ANKS1B	39	23	GABPB1	1424	chr15:50647182:-	ANKS1B	39950	chr12:99640642:-	ONLY_REF_SPLICE	YES	95	1	0.39	0.98	0.4093	0.2414	HGNC_GENEFAM,GABPB1->GA_binding_protein_transcription_factor_beta_subunit_1,Oncogene{Bushman},chr15:50569389-50647605:-,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	GMS10_CENTRAL_NERVOUS_SYSTEM	0.39	0.98	0.6507	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	TMEM116--ACAD10	32	14	TMEM116	10856	chr12:112374964:-	ACAD10	32029	chr12:112159475:+	ONLY_REF_SPLICE	YES	16	28	0.74	0.62	0.3358	0.1469	TMEM116->chr12:112369086-112450970:-,transmembrane_protein_116,ACAD10->acyl-CoA_dehydrogenase_family_member_10,chr12:112123857-112194903:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.62	0.74	0.4827	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	DNMBP--KIAA1217	23	7	DNMBP	3360	chr10:101728872:-	KIAA1217	31156	chr10:24166335:+	ONLY_REF_SPLICE	YES	19	0	0.61	1	0.2414	0.0735	DNMBP->chr10:101635334-101769676:-,dynamin_binding_protein,KIAA1217->KIAA1217,chr10:23983675-24836772:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.61	1	0.3149	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	LIMK2--SMTN	23	7	LIMK2	2286	chr22:31621805:+	SMTN	24392	chr22:31476436:+	ONLY_REF_SPLICE	YES	30	0	0.5	1	0.2414	0.0735	LIMK2->LIM_domain_kinase_2,chr22:31608225-31676066:+,SMTN->chr22:31460091-31500743:+,smoothelin	GMS10_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.3149	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	PLXDC1--TAF13	20	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2099	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.2099	TRUE	7	10	0	216	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	16	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1679	0.0105	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.1784	FALSE	499	1288	110	792	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	14	5	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.86	1	0.1469	0.0525	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GMS10_CENTRAL_NERVOUS_SYSTEM	0.86	1	0.1994	FALSE	292	1546	117	613	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	12	9	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.81	0.1259	0.0945	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.81	1	0.2204	TRUE	458	1351	185	561	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	ZNF654--HMGB2	13	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1364	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.1364	TRUE	0	0	0	518	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	12	3	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.83	1	0.1259	0.0315	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GMS10_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.1574	FALSE	499	1288	110	792	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	12	2	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1259	0.021	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.1469	FALSE	499	1288	110	792	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	PPP5C--HIF3A	7	22	PPP5C	4437	chr19:46879831:+	HIF3A	37727	chr19:46842782:+	ONLY_REF_SPLICE	YES	155	1	0.16	0.97	0.0735	0.2309	LOCAL_REARRANGEMENT:+:[3561],PPP5C->chr19:46850251-46896238:+,protein_phosphatase_5_catalytic_subunit,HIF3A->chr19:46800303-46846690:+,hypoxia_inducible_factor_3_alpha_subunit	GMS10_CENTRAL_NERVOUS_SYSTEM	0.16	0.97	0.3044	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL4A2	8	14	COL1A1	13037	chr17:48266738:-	COL4A2	28640	chr13:111080814:+	ONLY_REF_SPLICE	YES	5360	1093	0	0.02	0.084	0.1469	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	GMS10_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.2309	TRUE	0	0	0	1	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	9	10	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.53	1	0.0945	0.105	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GMS10_CENTRAL_NERVOUS_SYSTEM	0.53	1	0.1995	FALSE	164	806	69	479	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL4A2	7	17	COL1A1	15399	chr17:48264376:-	COL4A2	28721	chr13:111080895:+	INCL_NON_REF_SPLICE	NO	5201	1196	0	0.02	0.0735	0.1784	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	GMS10_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.2519	FALSE	0	0	0	2	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	ZBTB20--CD96	10	5	ZBTB20	6598	chr3:114693213:-	CD96	61035	chr3:111356043:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.105	0.0525	ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,CD96->CD96_molecule,chr3:111011566-111384597:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.94	1	0.1575	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	TMEM116--ACAD10	8	11	TMEM116	9855	chr12:112375965:-	ACAD10	32029	chr12:112159475:+	ONLY_REF_SPLICE	YES	17	28	0.53	0.4	0.084	0.1154	TMEM116->chr12:112369086-112450970:-,transmembrane_protein_116,ACAD10->acyl-CoA_dehydrogenase_family_member_10,chr12:112123857-112194903:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.4	0.53	0.1994	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	8	9	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	0	0.5	1	0.084	0.0945	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GMS10_CENTRAL_NERVOUS_SYSTEM	0.5	1	0.1785	FALSE	125	705	46	456	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	GABPB1--ANKS1B	3	23	GABPB1	2448	chr15:50638569:-	ANKS1B	39950	chr12:99640642:-	ONLY_REF_SPLICE	YES	100	1	0.21	0.96	0.0315	0.2414	HGNC_GENEFAM,GABPB1->GA_binding_protein_transcription_factor_beta_subunit_1,Oncogene{Bushman},chr15:50569389-50647605:-,ANKS1B->ankyrin_repeat_and_sterile_alpha_motif_domain_containing_1B,chr12:99120235-100378432:-	GMS10_CENTRAL_NERVOUS_SYSTEM	0.21	0.96	0.2729	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	COL1A1--NPM1	7	4	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	4898	1	0	0.92	0.0735	0.042	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	GMS10_CENTRAL_NERVOUS_SYSTEM	0	0.92	0.1155	TRUE	0	0	0	31	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	7	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0735	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.0735	TRUE	1	0	0	97	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	7	0	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0735	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.0735	TRUE	1	0	0	97	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	9	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	3	0	0.81	1	0.042	0.0945	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GMS10_CENTRAL_NERVOUS_SYSTEM	0.81	1	0.1365	FALSE	499	1288	110	792	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	9	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.81	1	0.042	0.0945	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GMS10_CENTRAL_NERVOUS_SYSTEM	0.81	1	0.1365	FALSE	499	1288	110	792	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	RP11-115J23.1--PAX6	5	5	RP11-115J23.1	2304	chr11:28763455:+	PAX6	14577	chr11:31832563:-	ONLY_REF_SPLICE	YES	1	258	0.91	0.04	0.0525	0.0525	RP11-115J23.1->chr11:28724162-29085368:+,PAX6->Oncogene{Bushman},chr11:31806340-31839509:-,paired_box_6	GMS10_CENTRAL_NERVOUS_SYSTEM	0.04	0.91	0.105	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	TPM1--UBB	6	0	TPM1	11638	chr15:63354803:+	UBB	22294	chr17:16285216:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.063	0	GTEx&tcga_normals:1/3694=0.03%,TPM1->chr15:63334831-63364114:+,tropomyosin_1_(alpha),UBB->chr17:16284112-16286059:+,ubiquitin_B	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.063	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	COL1A1--NPM1	4	5	COL1A1	13029	chr17:48266746:-	NPM1	22878	chr5:170814872:+	INCL_NON_REF_SPLICE	YES	4980	1	0	0.9	0.042	0.0525	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	GMS10_CENTRAL_NERVOUS_SYSTEM	0	0.9	0.0945	FALSE	0	0	0	31	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	CTD-2337A12.1--CAST	4	4	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	50	1	0.14	0.042	0.042	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.14	1	0.084	TRUE	347	1186	183	220	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	DNAJC6--AK4	4	3	DNAJC6	8435	chr1:65831879:+	AK4	34543	chr1:65656393:+	ONLY_REF_SPLICE	YES	38	49	0.16	0.12	0.042	0.0315	LOCAL_REARRANGEMENT:+:[16074],DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+,AK4->adenylate_kinase_4,chr1:65613232-65697828:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.12	0.16	0.0735	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	RP11-680G10.1--GSE1	4	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	28	1	0.2	0.042	0.0315	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.2	1	0.0735	TRUE	465	1949	224	605	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	MT-ND6--MT-TE	4	1	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.042	0.0105	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	GMS10_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.0525	FALSE	499	1288	110	792	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	DNAJC13--PPARGC1A	2	8	DNAJC13	43899	chr3:132231943:+	PPARGC1A	82578	chr4:23797548:-	ONLY_REF_SPLICE	YES	95	13	0.1	0.43	0.021	0.084	DNAJC13->DnaJ_heat_shock_protein_family_(Hsp40)_member_C13,chr3:132136370-132257876:+,PPARGC1A->PPARG_coactivator_1_alpha,chr4:23756664-23905712:-	GMS10_CENTRAL_NERVOUS_SYSTEM	0.1	0.43	0.105	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	FTH1--ACTB	4	0	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.042	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.042	TRUE	1	0	0	97	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	RP11-141M1.3--STARD13	4	0	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.042	0	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.042	FALSE	141	264	50	91	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	COL1A1--COL4A2	2	5	COL1A1	8471	chr17:48271304:-	COL4A2	43806	chr13:111114461:+	ONLY_REF_SPLICE	YES	5579	1243	0	0.01	0.021	0.0525	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.11%,HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL4A2->chr13:110958159-111165374:+,collagen_type_IV_alpha_2	GMS10_CENTRAL_NERVOUS_SYSTEM	0	0.01	0.0735	FALSE	0	0	0	1	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	HCG4P5--EEF2	3	1	HCG4P5	1523	chr6:29910322:-	EEF2	5033	chr19:3985428:-	INCL_NON_REF_SPLICE	YES	2	0	0.67	1	0.0315	0.0105	HCG4P5->HLA_complex_group_4_pseudogene_5,chr6:29909852-29910844:-,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	GMS10_CENTRAL_NERVOUS_SYSTEM	0.67	1	0.042	TRUE	0	0	0	3	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	TMEM116--ACAD10	1	9	TMEM116	8801	chr12:112381069:-	ACAD10	32029	chr12:112159475:+	ONLY_REF_SPLICE	NO	27	28	0.27	0.26	0.0105	0.0945	TMEM116->chr12:112369086-112450970:-,transmembrane_protein_116,ACAD10->acyl-CoA_dehydrogenase_family_member_10,chr12:112123857-112194903:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.26	0.27	0.105	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	TEAD1--PARVA	3	0	TEAD1	4496	chr11:12785981:+	PARVA	32787	chr11:12495292:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0315	0	GTEx_FI:{Adipose_Tissue=[count:1=pct:0.3],Vagina=[count:1=pct:1.8],Colon=[count:1=pct:0.5]},GTEx_v2:{count=3;pct=0.03%;dist=Vagina=1,Adipose_-_Visceral_(Omentum)=1,Esophagus_-_Muscularis=1},TEAD1->TEA_domain_transcription_factor_1,chr11:12695969-12966298:+,PARVA->chr11:12398732-12552348:+,parvin_alpha	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.0315	TRUE	3	5	0	10	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	AMPH--RPS27L	2	2	AMPH	1285	chr7:38670883:-	RPS27L	32474	chr15:63448720:-	ONLY_REF_SPLICE	YES	73	41	0.05	0.09	0.021	0.021	AMPH->amphiphysin,chr7:38423305-38671167:-,RPS27L->chr15:63418071-63450220:-,ribosomal_protein_S27_like	GMS10_CENTRAL_NERVOUS_SYSTEM	0.05	0.09	0.042	TRUE	0	0	0	1	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	RNF152--RP11-879F14.1	2	2	RNF152	2453	chr18:59560028:-	RP11-879F14.1	23747	chr18:59259856:-	ONLY_REF_SPLICE	YES	9	0	0.31	1	0.021	0.021	NEIGHBORS[59231],RNF152->chr18:59475296-59561480:-,ring_finger_protein_152,RP11-879F14.1->chr18:59259608-59416065:-	GMS10_CENTRAL_NERVOUS_SYSTEM	0.31	1	0.042	FALSE	275	472	65	43	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	ADAM9--HTRA4	2	1	ADAM9	1292	chr8:38854679:+	HTRA4	34010	chr8:38835472:+	ONLY_REF_SPLICE	YES	1200	0	0	1	0.021	0.0105	LOCAL_REARRANGEMENT:+:[8207],ADAM9->ADAM_metallopeptidase_domain_9,Oncogene{Bushman},chr8:38854388-38962663:+,HTRA4->HtrA_serine_peptidase_4,chr8:38831683-38846181:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0	1	0.0315	FALSE	0	0	0	1	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	PPP1R12C--CNN2	2	1	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	151	1436	0.02	0	0.021	0.0105	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0	0.02	0.0315	FALSE	35	34	3	30	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	PRKD1--CTD-2251F13.1	2	1	PRKD1	2678	chr14:30516916:-	CTD-2251F13.1	39150	chr14:30442439:-	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.021	0.0105	PRKD1->Oncogene{Bushman},chr14:30045687-30661104:-,protein_kinase_D1,CTD-2251F13.1->chr14:30421603-30766249:-	GMS10_CENTRAL_NERVOUS_SYSTEM	0.6	1	0.0315	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	PRR16--CTD-2334D19.1	2	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	2	0	0.6	1	0.021	0.0105	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.6	1	0.0315	FALSE	56	216	12	147	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	RASSF8--SSPN	2	1	RASSF8	9484	chr12:26208379:+	SSPN	28668	chr12:26377226:+	ONLY_REF_SPLICE	YES	40	5	0.07	0.38	0.021	0.0105	NEIGHBORS[42099],RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	GMS10_CENTRAL_NERVOUS_SYSTEM	0.07	0.38	0.0315	FALSE	0	0	1	3	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	ACTN1--SLC39A9	2	0	ACTN1	8201	chr14:69387723:-	SLC39A9	41481	chr14:69919958:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	ACTN1->actinin_alpha_1,chr14:69340860-69446157:-,SLC39A9->chr14:69864732-69929105:+,solute_carrier_family_39_member_9	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	AL136419.6--UBB	2	0	AL136419.6	6640	chr14:24679554:-	UBB	11447	chr17:16285216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	AL136419.6->chr14:24678852-24685193:-,UBB->chr17:16284112-16286059:+,ubiquitin_B	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	CEP89--UBA2	2	0	CEP89	14040	chr19:33422335:-	UBA2	35147	chr19:34929550:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	CEP89->centrosomal_protein_89,chr19:33369902-33462897:-,UBA2->chr19:34919257-34960853:+,ubiquitin_like_modifier_activating_enzyme_2	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	COL4A1--ELMOD2	2	0	COL4A1	2266	chr13:110895022:-	ELMOD2	52383	chr4:141456887:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	COL4A1->chr13:110801318-110959496:-,collagen_type_IV_alpha_1,ELMOD2->ELMO_domain_containing_2,chr4:141445312-141474924:+	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	EIF3M--GANAB	2	0	EIF3M	1132	chr11:32605475:+	GANAB	19008	chr11:62407203:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	EIF3M->chr11:32605344-32627808:+,eukaryotic_translation_initiation_factor_3_subunit_M,GANAB->chr11:62392298-62414104:-,glucosidase_II_alpha_subunit	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	LAMB2--COL1A2	2	0	LAMB2	6796	chr3:49163796:-	COL1A2	36379	chr7:94049853:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	LAMB2->chr3:49158547-49170551:-,laminin_subunit_beta_2,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	PCYT1A--TFRC	2	0	PCYT1A	1343	chr3:196014486:-	TFRC	23609	chr3:195803993:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	PCYT1A->chr3:195941093-196014828:-,phosphate_cytidylyltransferase_1,_choline,_alpha,TFRC->Oncogene{Bushman},chr3:195754054-195809060:-,transferrin_receptor	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	RASSF8--SSPN	2	0	RASSF8	3380	chr12:26148063:+	SSPN	28668	chr12:26377226:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	NEIGHBORS[42099],RASSF8->Ras_association_domain_family_member_8,chr12:26111962-26232825:+,SSPN->Oncogene{Bushman},chr12:26274924-26452223:+,sarcospan	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	FALSE	0	0	0	3	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	RBM39--ILF2	2	0	RBM39	16052	chr20:34302107:-	ILF2	33218	chr1:153636950:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	RBM39->Oncogene{Bushman},RNA_binding_motif_protein_39,chr20:34291531-34330234:-,ILF2->chr1:153634512-153643524:-,interleukin_enhancer_binding_factor_2	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	FALSE	515	4851	409	746	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	SNHG16--RAC1	2	0	SNHG16	1092	chr17:74553939:+	RAC1	13523	chr7:6426843:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	SNHG16->chr17:74553848-74561430:+,small_nucleolar_RNA_host_gene_16,RAC1->ArcherDX_panel,FoundationOne_panel,chr7:6414154-6443608:+,ras-related_C3_botulinum_toxin_substrate_1_(rho_family,_small_GTP_binding_protein_Rac1)	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	SNX12--DEK	2	0	SNX12	4204	chrX:70280878:-	DEK	12423	chr6:18256686:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	SNX12->chrX:70279094-70288273:-,sorting_nexin_12,DEK->DEK_proto-oncogene,Oncogene{Bushman},chr6:18224099-18265054:-	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	TP53BP2--SRP54	2	0	TP53BP2	3652	chr1:224008922:-	SRP54	43678	chr14:35497294:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	TP53BP2->Oncogene{Bushman},chr1:223967601-224033674:-,tumor_protein_p53_binding_protein_2,SRP54->chr14:35451163-35498773:+,signal_recognition_particle_54kDa	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	VAPB--STX16	2	0	VAPB	3372	chr20:56993419:+	STX16	24362	chr20:57242546:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.021	0	GTEx&tcga_normals:1/3694=0.03%,VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+,STX16->chr20:57226328-57254582:+,syntaxin_16	GMS10_CENTRAL_NERVOUS_SYSTEM	1	1	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	ZBTB20--CD96	1	4	ZBTB20	6598	chr3:114693213:-	CD96	61038	chr3:111356046:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0105	0.042	ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20,CD96->CD96_molecule,chr3:111011566-111384597:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.83	1	0.0525	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	TMEM116--ACAD10	1	3	TMEM116	5462	chr12:112429562:-	ACAD10	32029	chr12:112159475:+	ONLY_REF_SPLICE	YES	25	28	0.14	0.12	0.0105	0.0315	TMEM116->chr12:112369086-112450970:-,transmembrane_protein_116,ACAD10->acyl-CoA_dehydrogenase_family_member_10,chr12:112123857-112194903:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.12	0.14	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	TMEM116--ACAD10	1	3	TMEM116	6528	chr12:112416540:-	ACAD10	32029	chr12:112159475:+	ONLY_REF_SPLICE	NO	29	28	0.12	0.12	0.0105	0.0315	TMEM116->chr12:112369086-112450970:-,transmembrane_protein_116,ACAD10->acyl-CoA_dehydrogenase_family_member_10,chr12:112123857-112194903:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.12	0.12	0.042	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	C14orf37--PSMA3	1	2	C14orf37	2258	chr14:58758353:-	PSMA3	24451	chr14:58718837:+	ONLY_REF_SPLICE	YES	0	1075	1	0	0.0105	0.021	NEIGHBORS_OVERLAP:-:+:[27181],C14orf37->chr14:58466453-58764857:-,chromosome_14_open_reading_frame_37,PSMA3->chr14:58711549-58738730:+,proteasome_subunit_alpha_3	GMS10_CENTRAL_NERVOUS_SYSTEM	0	1	0.0315	FALSE	1	3	0	9	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	COL8A1--CMSS1	1	2	COL8A1	13411	chr3:99509854:+	CMSS1	32892	chr3:99865817:+	ONLY_REF_SPLICE	NO	284	215	0.01	0.01	0.0105	0.021	GTEx&tcga_normals:5/3694=0.14%,GTEx:0.08%,NEIGHBORS[18608],COL8A1->chr3:99357319-99518070:+,collagen_type_VIII_alpha_1,CMSS1->chr3:99536678-99897447:+,cms1_ribosomal_small_subunit_homolog_(yeast)	GMS10_CENTRAL_NERVOUS_SYSTEM	0.01	0.01	0.0315	FALSE	38	10	2	29	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	DNAJC6--AK4	1	2	DNAJC6	8435	chr1:65831879:+	AK4	35663	chr1:65684437:+	ONLY_REF_SPLICE	YES	38	48	0.07	0.06	0.0105	0.021	LOCAL_REARRANGEMENT:+:[16074],DNAJC6->DnaJ_heat_shock_protein_family_(Hsp40)_member_C6,Oncogene{Bushman},chr1:65713902-65881552:+,AK4->adenylate_kinase_4,chr1:65613232-65697828:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.06	0.07	0.0315	TRUE	0	0	0	1	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	AFF1--HNRNPD	1	1	AFF1	3385	chr4:87869723:+	HNRNPD	38608	chr4:83280792:-	ONLY_REF_SPLICE	YES	43	376	0.04	0.01	0.0105	0.0105	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,HNRNPD->Oncogene{Bushman},chr4:83273651-83295656:-,heterogeneous_nuclear_ribonucleoprotein_D	GMS10_CENTRAL_NERVOUS_SYSTEM	0.01	0.04	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	AFF1--HNRNPD	1	1	AFF1	8490	chr4:87968746:+	HNRNPD	38608	chr4:83280792:-	ONLY_REF_SPLICE	NO	73	376	0.03	0.01	0.0105	0.0105	AFF1->AF4/FMR2_family_member_1,Oncogene{Bushman},chr4:87856154-88062206:+,HNRNPD->Oncogene{Bushman},chr4:83273651-83295656:-,heterogeneous_nuclear_ribonucleoprotein_D	GMS10_CENTRAL_NERVOUS_SYSTEM	0.01	0.03	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	C3--NEO1	1	1	C3	13443	chr19:6707087:-	NEO1	64333	chr15:73590689:+	ONLY_REF_SPLICE	NO	794	74	0	0.03	0.0105	0.0105	C3->chr19:6677715-6730573:-,complement_component_3,NEO1->chr15:73344051-73597547:+,neogenin_1	GMS10_CENTRAL_NERVOUS_SYSTEM	0	0.03	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	DNMBP--KIAA1217	1	1	DNMBP	3360	chr10:101728872:-	KIAA1217	32246	chr10:24296154:+	ONLY_REF_SPLICE	NO	19	1	0.1	0.67	0.0105	0.0105	DNMBP->chr10:101635334-101769676:-,dynamin_binding_protein,KIAA1217->KIAA1217,chr10:23983675-24836772:+	GMS10_CENTRAL_NERVOUS_SYSTEM	0.1	0.67	0.021	TRUE	0	0	0	1	0	TRUE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	ENO1--RERE	1	1	ENO1	11923	chr1:8922946:-	RERE	21594	chr1:8716500:-	ONLY_REF_SPLICE	NO	4579	5	0	0.29	0.0105	0.0105	NEIGHBORS[43359],ENO1->Oncogene{Bushman},chr1:8921061-8939308:-,enolase_1,RERE->Oncogene{Bushman},arginine-glutamic_acid_dipeptide_repeats,chr1:8412457-8877702:-	GMS10_CENTRAL_NERVOUS_SYSTEM	0	0.29	0.021	FALSE	0	0	0	1	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	17	13	0.11	0.13	0.0105	0.0105	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	GMS10_CENTRAL_NERVOUS_SYSTEM	0.11	0.13	0.021	FALSE	8	57	1	47	0	FALSE	ACH-000102
GMS10_CENTRAL_NERVOUS_SYSTEM	PCCA--SUCLA2	1	1	PCCA	3510	chr13:100764315:+	SUCLA2	50692	chr13:48517580:-	ONLY_REF_SPLICE	NO	69	109	0.03	0.02	0.0105	0.0105	PCCA->chr13:100741269-101182686:+,propionyl-CoA_carboxylase_alpha_subunit,SUCLA2->chr13:48510622-48612125:-,succinate-CoA_ligase_ADP-forming_beta_subunit	GMS10_CENTRAL_NERVOUS_SYSTEM	0.02	0.03	0.021	TRUE	0	0	0	1	0	FALSE	ACH-000102
HS729_SOFT_TISSUE	HEG1--MED12L	1001	425	HEG1	3981	chr3:124746049:-	MED12L	51379	chr3:151067847:+	ONLY_REF_SPLICE	YES	237	1	0.86	1	11.6971	4.9663	HEG1->chr3:124684554-124774802:-,heart_development_protein_with_EGF_like_domains_1,MED12L->chr3:150803484-151154860:+,mediator_complex_subunit_12_like	HS729_SOFT_TISSUE	0.86	1	16.6634	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	DHCR24--SLC2A1	187	59	DHCR24	4712	chr1:55340766:-	SLC2A1	18143	chr1:43408992:-	ONLY_REF_SPLICE	YES	159	262	0.61	0.48	2.1852	0.6894	DHCR24->24-dehydrocholesterol_reductase,chr1:55315306-55352891:-,SLC2A1->chr1:43391052-43424530:-,solute_carrier_family_2_member_1	HS729_SOFT_TISSUE	0.48	0.61	2.8746	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TRANK1--CAV3	109	38	TRANK1	8785	chr3:36931320:-	CAV3	40936	chr3:8883028:+	ONLY_REF_SPLICE	YES	7	0	0.95	1	1.2737	0.444	TRANK1->chr3:36868311-36986548:-,tetratricopeptide_repeat_and_ankyrin_repeat_containing_1,CAV3->caveolin_3,chr3:8775486-8883492:+	HS729_SOFT_TISSUE	0.95	1	1.7177	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TIMM23B--LINC00843	104	22	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2153	0.2571	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HS729_SOFT_TISSUE	1	1	1.4724	TRUE	508	994	45	981	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	C11orf58--PTGIS	96	39	C11orf58	12485	chr11:16774441:+	PTGIS	21701	chr20:48164556:-	ONLY_REF_SPLICE	YES	722	29	0.16	0.82	1.1218	0.4557	C11orf58->chr11:16634679-16778428:+,chromosome_11_open_reading_frame_58,PTGIS->Oncogene{Bushman},chr20:48120411-48184683:-,prostaglandin_I2_(prostacyclin)_synthase	HS729_SOFT_TISSUE	0.16	0.82	1.5775	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ITGB8--ABCB5	95	20	ITGB8	12750	chr7:20421508:+	ABCB5	60472	chr7:20792983:+	ONLY_REF_SPLICE	YES	30	0	0.79	1	1.1101	0.2337	ITGB8->chr7:20370325-20455377:+,integrin_subunit_beta_8,ABCB5->ATP_binding_cassette_subfamily_B_member_5,Oncogene{Bushman},chr7:20654830-20816658:+	HS729_SOFT_TISSUE	0.79	1	1.3438	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	PLXNB2--PPP3R1	97	4	PLXNB2	1075	chr22:50745982:-	PPP3R1	26594	chr2:68444263:-	ONLY_REF_SPLICE	YES	1	19	0.99	0.84	1.1335	0.0467	PLXNB2->chr22:50713408-50746056:-,plexin_B2,PPP3R1->chr2:68405989-68483369:-,protein_phosphatase_3_regulatory_subunit_B,_alpha	HS729_SOFT_TISSUE	0.84	0.99	1.1802	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	QKI--SECTM1	81	34	QKI	2336	chr6:163836367:+	SECTM1	34450	chr17:80285168:-	ONLY_REF_SPLICE	YES	71	9	0.62	0.93	0.9465	0.3973	QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,SECTM1->chr17:80278900-80291950:-,secreted_and_transmembrane_1	HS729_SOFT_TISSUE	0.62	0.93	1.3438	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	EXOSC3--MYRIP	73	62	EXOSC3	3115	chr9:37784718:-	MYRIP	19427	chr3:40192539:+	ONLY_REF_SPLICE	YES	71	0	0.66	1	0.853	0.7245	EXOSC3->chr9:37766975-37801434:-,exosome_component_3,MYRIP->chr3:39850405-40301812:+,myosin_VIIA_and_Rab_interacting_protein	HS729_SOFT_TISSUE	0.66	1	1.5775	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MIR1539--C18orf32	65	17	MIR1539	1152	chr18:47013860:+	C18orf32	7403	chr18:47010141:-	INCL_NON_REF_SPLICE	YES	1	205	0.99	0.29	0.7596	0.1987	LOCAL_INVERSION:+:-:[87],MIR1539->chr18:47013709-47018248:+,microRNA_1539,C18orf32->chr18:47008028-47013622:-,chromosome_18_open_reading_frame_32	HS729_SOFT_TISSUE	0.29	0.99	0.9583	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TIMM23--RP11-464F9.1	68	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	185	2	0.27	0.97	0.7946	0.0117	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HS729_SOFT_TISSUE	0.27	0.97	0.8063	TRUE	519	3926	326	965	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	OR51S1--TP53I11	63	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7362	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HS729_SOFT_TISSUE	1	1	0.7362	TRUE	402	216	10	229	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	STAT1--PLIN2	52	18	STAT1	25527	chr2:191839556:-	PLIN2	33730	chr9:19131269:-	ONLY_REF_SPLICE	YES	215	0	0.25	1	0.6076	0.2103	STAT1->chr2:191829084-191885686:-,signal_transducer_and_activator_of_transcription_1,PLIN2->chr9:19108373-19149288:-,perilipin_2	HS729_SOFT_TISSUE	0.25	1	0.8179	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MPRIP--CCDC144A	48	6	MPRIP	4886	chr17:16981390:+	CCDC144A	70454	chr17:16664739:+	ONLY_REF_SPLICE	YES	236	10	0.19	0.84	0.5609	0.0701	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,CCDC144A->chr17:16592851-16707767:+,coiled-coil_domain_containing_144A	HS729_SOFT_TISSUE	0.19	0.84	0.631	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	JARID2--SMIM15	40	33	JARID2	3478	chr6:15374483:+	SMIM15	29356	chr5:60457054:-	ONLY_REF_SPLICE	YES	14	272	0.84	0.21	0.4674	0.3856	JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,SMIM15->chr5:60453536-60458301:-,small_integral_membrane_protein_15	HS729_SOFT_TISSUE	0.21	0.84	0.853	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	NFASC--CD9	43	15	NFASC	3708	chr1:204889868:+	CD9	60079	chr12:6334592:+	ONLY_REF_SPLICE	YES	1	125	0.98	0.32	0.5025	0.1753	NFASC->chr1:204797779-204991950:+,neurofascin,CD9->CD9_molecule,Oncogene{Bushman},chr12:6308881-6347425:+	HS729_SOFT_TISSUE	0.32	0.98	0.6778	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	GMDS--FARS2	36	10	GMDS	8873	chr6:1960101:-	FARS2	31979	chr6:5771524:+	ONLY_REF_SPLICE	YES	27	14	0.63	0.77	0.4207	0.1169	GMDS->GDP-mannose_4,6-dehydratase,chr6:1624041-2245926:-,FARS2->chr6:5261277-5771813:+,phenylalanyl-tRNA_synthetase_2,_mitochondrial	HS729_SOFT_TISSUE	0.63	0.77	0.5376	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ZNF654--HMGB2	32	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3739	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HS729_SOFT_TISSUE	1	1	0.3739	TRUE	0	0	0	518	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	CUL1--OPN1SW	25	12	CUL1	2116	chr7:148396121:+	OPN1SW	24165	chr7:128415702:-	INCL_NON_REF_SPLICE	YES	60	0	0.38	1	0.2921	0.1402	CUL1->Oncogene{Bushman},chr7:148395006-148498128:+,cullin_1,OPN1SW->chr7:128412545-128415844:-,opsin_1_(cone_pigments),_short-wave-sensitive	HS729_SOFT_TISSUE	0.38	1	0.4323	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	DERA--VWF	28	0	DERA	1243	chr12:16064348:+	VWF	29011	chr12:6174439:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3272	0	DERA->chr12:16064106-16190220:+,deoxyribose-phosphate_aldolase,VWF->chr12:6058040-6233936:-,von_Willebrand_factor	HS729_SOFT_TISSUE	1	1	0.3272	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RASA2--ADIPOR2	23	18	RASA2	18694	chr3:141300019:+	ADIPOR2	40404	chr12:1887020:+	ONLY_REF_SPLICE	YES	17	72	0.71	0.36	0.2688	0.2103	RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	HS729_SOFT_TISSUE	0.36	0.71	0.4791	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ZDHHC3--MIR1302-10	26	5	ZDHHC3	7478	chr3:44974610:-	MIR1302-10	22330	chr15:102500185:-	ONLY_REF_SPLICE	YES	171	0	0.15	1	0.3038	0.0584	ZDHHC3->Oncogene{Bushman},chr3:44956749-45017677:-,zinc_finger_DHHC-type_containing_3,MIR1302-10->chr15:102500051-102501611:-,microRNA_1302-10	HS729_SOFT_TISSUE	0.15	1	0.3622	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RP11-444D3.1--SOX5	26	4	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3038	0.0467	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS729_SOFT_TISSUE	1	1	0.3505	TRUE	477	1352	189	275	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	EIF5B--AC104655.2	22	19	EIF5B	9953	chr2:99993099:+	AC104655.2	28689	chr2:105714720:-	ONLY_REF_SPLICE	YES	227	0	0.15	1	0.2571	0.222	EIF5B->chr2:99953816-100017789:+,eukaryotic_translation_initiation_factor_5B,AC104655.2->chr2:105713510-105719402:-	HS729_SOFT_TISSUE	0.15	1	0.4791	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	EIF5B--AC104655.2	23	15	EIF5B	9953	chr2:99993099:+	AC104655.2	29553	chr2:105713856:-	ONLY_REF_SPLICE	YES	227	1	0.14	0.97	0.2688	0.1753	EIF5B->chr2:99953816-100017789:+,eukaryotic_translation_initiation_factor_5B,AC104655.2->chr2:105713510-105719402:-	HS729_SOFT_TISSUE	0.14	0.97	0.4441	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	B4GALT5--ARNTL	24	8	B4GALT5	1303	chr20:48330113:-	ARNTL	40128	chr11:13408143:+	ONLY_REF_SPLICE	YES	12	30	0.73	0.52	0.2804	0.0935	B4GALT5->Oncogene{Bushman},beta-1,4-galactosyltransferase_5,chr20:48249482-48330415:-,ARNTL->aryl_hydrocarbon_receptor_nuclear_translocator_like,chr11:13298199-13408813:+	HS729_SOFT_TISSUE	0.52	0.73	0.3739	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	DNAJC3--GPC6	23	12	DNAJC3	8733	chr13:96416207:+	GPC6	20843	chr13:94197516:+	ONLY_REF_SPLICE	YES	103	43	0.25	0.45	0.2688	0.1402	DNAJC3->DnaJ_heat_shock_protein_family_(Hsp40)_member_C3,chr13:96329393-96447243:+,GPC6->chr13:93879095-95059655:+,glypican_6	HS729_SOFT_TISSUE	0.25	0.45	0.409	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ELL--SSBP4	24	6	ELL	1207	chr19:18632731:-	SSBP4	22531	chr19:18538161:+	ONLY_REF_SPLICE	YES	47	17	0.39	0.64	0.2804	0.0701	LOCAL_INVERSION:-:+:[8101],ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,SSBP4->Oncogene{Bushman},chr19:18529674-18545372:+,single_stranded_DNA_binding_protein_4	HS729_SOFT_TISSUE	0.39	0.64	0.3505	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	STAG1--PLS1	23	8	STAG1	21977	chr3:136152398:-	PLS1	64921	chr3:142422710:+	ONLY_REF_SPLICE	YES	35	12	0.47	0.72	0.2688	0.0935	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,PLS1->chr3:142315229-142432506:+,plastin_1	HS729_SOFT_TISSUE	0.47	0.72	0.3623	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	VPS13C--AF146191.4	22	12	VPS13C	27755	chr15:62264824:-	AF146191.4	100385	chr4:190742819:-	ONLY_REF_SPLICE	YES	3	0	0.92	1	0.2571	0.1402	VPS13C->chr15:62144588-62352672:-,vacuolar_protein_sorting_13_homolog_C,AF146191.4->chr4:190701490-190861426:-	HS729_SOFT_TISSUE	0.92	1	0.3973	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	FAM131A--SOX2-OT	19	20	FAM131A	2393	chr3:184055159:+	SOX2-OT	37225	chr3:181457357:+	ONLY_REF_SPLICE	YES	23	0	0.63	1	0.222	0.2337	FAM131A->chr3:184053714-184064063:+,family_with_sequence_similarity_131_member_A,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	HS729_SOFT_TISSUE	0.63	1	0.4557	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RP4-565E6.1--HYDIN	20	16	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	1	0	0.97	1	0.2337	0.187	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS729_SOFT_TISSUE	0.97	1	0.4207	TRUE	456	1387	91	133	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	FAM131A--SOX2-OT	19	18	FAM131A	1198	chr3:184053911:+	SOX2-OT	37225	chr3:181457357:+	ONLY_REF_SPLICE	YES	24	0	0.61	1	0.222	0.2103	FAM131A->chr3:184053714-184064063:+,family_with_sequence_similarity_131_member_A,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	HS729_SOFT_TISSUE	0.61	1	0.4323	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CUL1--OPN1SW	22	2	CUL1	2116	chr7:148396121:+	OPN1SW	25925	chr7:128413942:-	ONLY_REF_SPLICE	YES	60	6	0.29	0.8	0.2571	0.0234	CUL1->Oncogene{Bushman},chr7:148395006-148498128:+,cullin_1,OPN1SW->chr7:128412545-128415844:-,opsin_1_(cone_pigments),_short-wave-sensitive	HS729_SOFT_TISSUE	0.29	0.8	0.2805	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	EXOSC3--MYRIP	4	69	EXOSC3	3452	chr9:37784381:-	MYRIP	19427	chr3:40192539:+	ONLY_REF_SPLICE	YES	77	0	0.49	1	0.0467	0.8063	EXOSC3->chr9:37766975-37801434:-,exosome_component_3,MYRIP->chr3:39850405-40301812:+,myosin_VIIA_and_Rab_interacting_protein	HS729_SOFT_TISSUE	0.49	1	0.853	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CTD-2337A12.1--CAST	20	2	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	54	1	0.29	0.2337	0.0234	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS729_SOFT_TISSUE	0.29	1	0.2571	TRUE	347	1186	183	220	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	PTPN23--PFKFB4	19	5	PTPN23	2245	chr3:47437707:+	PFKFB4	24581	chr3:48577204:-	ONLY_REF_SPLICE	YES	49	21	0.33	0.53	0.222	0.0584	PTPN23->chr3:47422501-47454931:+,protein_tyrosine_phosphatase,_non-receptor_type_23,PFKFB4->6-phosphofructo-2-kinase/fructose-2,6-biphosphatase_4,chr3:48555117-48599448:-	HS729_SOFT_TISSUE	0.33	0.53	0.2804	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MIPEPP3--ABHD12	20	0	MIPEPP3	1187	chr13:21872464:+	ABHD12	7917	chr20:25371382:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2337	0	GTEx_FI:{Brain=[count:25=pct:3.8],Thyroid=[count:10=pct:5.6],Esophagus=[count:10=pct:2.5],Adrenal_Gland=[count:8=pct:9.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:6=pct:1.9],Nerve=[count:5=pct:2.9],Testis=[count:3=pct:2.9],Lung=[count:3=pct:1.8],Stomach=[count:2=pct:2.2],Colon=[count:2=pct:1.0],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Liver=[count:1=pct:0.8],Bladder=[count:1=pct:11.1],Spleen=[count:1=pct:0.9],Vagina=[count:1=pct:1.8],Adipose_Tissue=[count:1=pct:0.3],Pancreas=[count:1=pct:0.6],Ovary=[count:1=pct:1.9]},MIPEPP3->chr13:21872278-21880512:+,mitochondrial_intermediate_peptidase_pseudogene_3,ABHD12->abhydrolase_domain_containing_12,chr20:25275379-25371619:-	HS729_SOFT_TISSUE	1	1	0.2337	TRUE	64	202	9	44	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	RASA2--ADIPOR2	15	15	RASA2	17968	chr3:141299293:+	ADIPOR2	40404	chr12:1887020:+	ONLY_REF_SPLICE	YES	15	72	0.67	0.29	0.1753	0.1753	RASA2->RAS_p21_protein_activator_2,chr3:141205889-141334184:+,ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+	HS729_SOFT_TISSUE	0.29	0.67	0.3506	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TOM1L2--PIGL	16	8	TOM1L2	1161	chr17:17875576:-	PIGL	43966	chr17:16250859:+	ONLY_REF_SPLICE	YES	84	8	0.22	0.75	0.187	0.0935	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L	HS729_SOFT_TISSUE	0.22	0.75	0.2805	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	C15orf57--CBX3	14	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	25	42	0.5	0.37	0.1636	0.1285	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HS729_SOFT_TISSUE	0.37	0.5	0.2921	TRUE	267	562	48	632	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	NCEH1--YEATS2	15	2	NCEH1	1372	chr3:172428637:-	YEATS2	21679	chr3:183465460:+	ONLY_REF_SPLICE	YES	33	24	0.34	0.41	0.1753	0.0234	NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+	HS729_SOFT_TISSUE	0.34	0.41	0.1987	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MKLN1-AS1--RP11-573J24.1	14	4	MKLN1-AS1	13605	chr7:130630479:-	RP11-573J24.1	21407	chr8:64501381:+	ONLY_REF_SPLICE	YES	21	0	0.46	1	0.1636	0.0467	MKLN1-AS1->chr7:130626519-130794935:-,RP11-573J24.1->chr8:64498558-64501966:+	HS729_SOFT_TISSUE	0.46	1	0.2103	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	NRIP1--AF127936.7	15	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1753	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS729_SOFT_TISSUE	1	1	0.1753	FALSE	292	1546	117	613	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	ATP2B2--GRM7	13	3	ATP2B2	3257	chr3:10575723:-	GRM7	62789	chr3:7721736:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1519	0.0351	ATP2B2->ATPase_plasma_membrane_Ca2+_transporting_2,chr3:10365707-10749716:-,GRM7->chr3:6811688-7783215:+,glutamate_metabotropic_receptor_7	HS729_SOFT_TISSUE	1	1	0.187	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	COL1A1--NPM1	13	2	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	7520	1	0	0.94	0.1519	0.0234	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HS729_SOFT_TISSUE	0	0.94	0.1753	TRUE	0	0	0	31	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	RP11-680G10.1--GSE1	13	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	27	1	0.34	0.1519	0.0117	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS729_SOFT_TISSUE	0.34	1	0.1636	TRUE	465	1949	224	605	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	NCEH1--ZMAT3	10	12	NCEH1	1372	chr3:172428637:-	ZMAT3	16089	chr3:178748787:-	ONLY_REF_SPLICE	YES	33	7	0.4	0.76	0.1169	0.1402	NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,ZMAT3->chr3:178735011-178790067:-,zinc_finger_matrin-type_3	HS729_SOFT_TISSUE	0.4	0.76	0.2571	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ARHGEF10--RP11-223C24.1	12	0	ARHGEF10	3311	chr8:1791602:+	RP11-223C24.1	44288	chr4:143504605:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1402	0	ARHGEF10->Rho_guanine_nucleotide_exchange_factor_10,chr8:1772142-1906807:+,RP11-223C24.1->chr4:143487172-143582103:+	HS729_SOFT_TISSUE	1	1	0.1402	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MT-ND6--MT-TE	12	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1402	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS729_SOFT_TISSUE	1	1	0.1402	FALSE	499	1288	110	792	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	ZNF654--HMGB2	12	0	ZNF654	1688	chr3:88188941:+	HMGB2	12525	chr4:174253314:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1402	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HS729_SOFT_TISSUE	1	1	0.1402	TRUE	0	0	0	518	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	FSCN1--RNF216	11	2	FSCN1	5248	chr7:5643661:+	RNF216	33159	chr7:5692141:-	ONLY_REF_SPLICE	YES	576	44	0.02	0.23	0.1285	0.0234	LOCAL_INVERSION:+:-:[13392],FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1,RNF216->Oncogene{Bushman},chr7:5659678-5821370:-,ring_finger_protein_216	HS729_SOFT_TISSUE	0.02	0.23	0.1519	TRUE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	MIR4435-1HG--PLGLB1	7	18	MIR4435-1HG	1216	chr2:112252462:-	PLGLB1	33083	chr2:87244811:-	ONLY_REF_SPLICE	YES	319	3	0.07	0.89	0.0818	0.2103	MIR4435-1HG->chr2:111953927-112252677:-,PLGLB1->chr2:87229682-87248975:-,plasminogen-like_B1	HS729_SOFT_TISSUE	0.07	0.89	0.2921	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MT-ND6--MT-TE	11	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1285	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS729_SOFT_TISSUE	1	1	0.1285	FALSE	499	1288	110	792	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	YEATS2--ZMAT3	11	0	YEATS2	9915	chr3:183465504:+	ZMAT3	44727	chr3:178748787:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1285	0	YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+,ZMAT3->chr3:178735011-178790067:-,zinc_finger_matrin-type_3	HS729_SOFT_TISSUE	1	1	0.1285	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CACHD1--RP4-794H19.1	9	7	CACHD1	9416	chr1:65095164:+	RP4-794H19.1	37258	chr1:59361681:-	ONLY_REF_SPLICE	YES	9	0	0.64	1	0.1052	0.0818	CACHD1->cache_domain_containing_1,chr1:64936428-65158741:+,RP4-794H19.1->chr1:59348540-59362375:-	HS729_SOFT_TISSUE	0.64	1	0.187	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	FSTL1--ZBTB20	9	7	FSTL1	14059	chr3:120121655:-	ZBTB20	59245	chr3:114099787:-	ONLY_REF_SPLICE	YES	1414	2	0.01	0.89	0.1052	0.0818	FSTL1->chr3:120111140-120170100:-,follistatin_like_1,ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20	HS729_SOFT_TISSUE	0.01	0.89	0.187	TRUE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	DAGLB--MSRA	9	6	DAGLB	18413	chr7:6449761:-	MSRA	26707	chr8:10065343:+	ONLY_REF_SPLICE	YES	64	7	0.19	0.68	0.1052	0.0701	DAGLB->chr7:6448757-6523821:-,diacylglycerol_lipase_beta,MSRA->chr8:9911778-10286401:+,methionine_sulfoxide_reductase_A	HS729_SOFT_TISSUE	0.19	0.68	0.1753	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	QKI--SECTM1	2	34	QKI	2336	chr6:163836367:+	SECTM1	32276	chr17:80287342:-	ONLY_REF_SPLICE	YES	71	10	0.34	0.78	0.0234	0.3973	QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,SECTM1->chr17:80278900-80291950:-,secreted_and_transmembrane_1	HS729_SOFT_TISSUE	0.34	0.78	0.4207	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ITGB8--ABCB5	8	9	ITGB8	12750	chr7:20421508:+	ABCB5	61619	chr7:20795050:+	ONLY_REF_SPLICE	YES	30	7	0.36	0.71	0.0935	0.1052	ITGB8->chr7:20370325-20455377:+,integrin_subunit_beta_8,ABCB5->ATP_binding_cassette_subfamily_B_member_5,Oncogene{Bushman},chr7:20654830-20816658:+	HS729_SOFT_TISSUE	0.36	0.71	0.1987	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MPRIP--RP11-434D9.1	10	1	MPRIP	4886	chr17:16981390:+	RP11-434D9.1	53087	chr5:67070826:+	ONLY_REF_SPLICE	YES	236	0	0.04	1	0.1169	0.0117	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,RP11-434D9.1->chr5:66675206-67101066:+	HS729_SOFT_TISSUE	0.04	1	0.1286	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TNS3--CTA-293F17.1	10	0	TNS3	1508	chr7:47621649:-	CTA-293F17.1	49995	chr7:20369136:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1169	0	TNS3->chr7:47314752-47622156:-,tensin_3,CTA-293F17.1->chr7:20367922-20371370:-	HS729_SOFT_TISSUE	1	1	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RP11-155G15.2--RP11-1E3.1	9	2	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1052	0.0234	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	HS729_SOFT_TISSUE	1	1	0.1286	FALSE	46	201	11	112	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	RP4-794H19.4--AK5	9	2	RP4-794H19.4	2191	chr1:59487249:+	AK5	12173	chr1:77752626:+	ONLY_REF_SPLICE	YES	3	131	0.79	0.08	0.1052	0.0234	RP4-794H19.4->chr1:59486059-59510286:+,AK5->adenylate_kinase_5,chr1:77747736-78025651:+	HS729_SOFT_TISSUE	0.08	0.79	0.1286	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CDK13--AC004485.3	8	5	CDK13	10205	chr7:40087476:+	AC004485.3	26360	chr7:24236648:-	ONLY_REF_SPLICE	YES	51	0	0.2	1	0.0935	0.0584	CDK13->chr7:39989636-40136733:+,cyclin-dependent_kinase_13,AC004485.3->chr7:24236281-24295338:-	HS729_SOFT_TISSUE	0.2	1	0.1519	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RP11-254I22.1--CTD-2337A12.1	9	0	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1052	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HS729_SOFT_TISSUE	1	1	0.1052	TRUE	6	15	3	35	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	ELP4--RCN1	8	2	ELP4	10185	chr11:31671769:+	RCN1	22333	chr11:31938885:+	ONLY_REF_SPLICE	YES	33	0	0.23	1	0.0935	0.0234	NEIGHBORS[28393],ELP4->chr11:31531297-31805546:+,elongator_acetyltransferase_complex_subunit_4,RCN1->chr11:31833939-32127301:+,reticulocalbin_1	HS729_SOFT_TISSUE	0.23	1	0.1169	FALSE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	MT-ND6--MT-TE	6	10	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0.1169	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS729_SOFT_TISSUE	1	1	0.187	FALSE	499	1288	110	792	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	ZNF578--CTC-512J12.6	8	2	ZNF578	4383	chr19:52960211:+	CTC-512J12.6	18286	chr19:44844694:-	INCL_NON_REF_SPLICE	YES	28	0	0.26	1	0.0935	0.0234	PROTCLUST,ZNF578->chr19:52956829-53015407:+,zinc_finger_protein_578,CTC-512J12.6->chr19:44833848-44905774:-	HS729_SOFT_TISSUE	0.26	1	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CLDN10--IGH@	8	1	CLDN10	4025	chr13:96212717:+	IGH@	11214	chr14:107283096:-	ONLY_REF_SPLICE	YES	2	0	0.82	1	0.0935	0.0117	CLDN10->chr13:96085858-96232013:+,claudin_10,IGH@->Oncogene{Bushman}	HS729_SOFT_TISSUE	0.82	1	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	NCLN--UCK2	7	5	NCLN	10481	chr19:3206423:+	UCK2	18034	chr1:165859441:+	ONLY_REF_SPLICE	YES	136	59	0.08	0.17	0.0818	0.0584	NCLN->chr19:3185561-3209573:+,nicalin,UCK2->chr1:165796768-165880855:+,uridine-cytidine_kinase_2	HS729_SOFT_TISSUE	0.08	0.17	0.1402	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	SAFB--CTD-2311B13.5	8	0	SAFB	2445	chr19:5626500:+	CTD-2311B13.5	23590	chr14:19564808:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0935	0	SAFB->chr19:5623046-5668489:+,scaffold_attachment_factor_B,CTD-2311B13.5->chr14:19562689-19566731:-	HS729_SOFT_TISSUE	1	1	0.0935	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	STAG1--PLS1	5	12	STAG1	21977	chr3:136152398:-	PLS1	63435	chr3:142416795:+	ONLY_REF_SPLICE	YES	35	7	0.33	0.71	0.0584	0.1402	STAG1->Oncogene{Bushman},chr3:136055077-136471220:-,stromal_antigen_1,PLS1->chr3:142315229-142432506:+,plastin_1	HS729_SOFT_TISSUE	0.33	0.71	0.1986	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	EXOSC3--MYRIP	1	27	EXOSC3	3115	chr9:37784718:-	MYRIP	20564	chr3:40204221:+	ONLY_REF_SPLICE	YES	71	7	0.28	0.8	0.0117	0.3155	EXOSC3->chr9:37766975-37801434:-,exosome_component_3,MYRIP->chr3:39850405-40301812:+,myosin_VIIA_and_Rab_interacting_protein	HS729_SOFT_TISSUE	0.28	0.8	0.3272	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RP11-680G10.1--GSE1	7	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	4	1	0.71	0.0818	0.0351	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HS729_SOFT_TISSUE	0.71	1	0.1169	TRUE	458	1351	185	561	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	TCF12--U66059.29	7	3	TCF12	3439	chr15:57213296:+	U66059.29	43226	chr7:141971897:-	INCL_NON_REF_SPLICE	YES	68	0	0.13	1	0.0818	0.0351	TCF12->Oncogene{Bushman},chr15:57210821-57591479:+,transcription_factor_12,U66059.29->chr7:141965650-141972054:-	HS729_SOFT_TISSUE	0.13	1	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	JARID2--CTC-436P18.3	7	2	JARID2	3478	chr6:15374483:+	CTC-436P18.3	31749	chr5:60497531:-	ONLY_REF_SPLICE	YES	14	0	0.39	1	0.0818	0.0234	JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,CTC-436P18.3->chr5:60497136-60560756:-	HS729_SOFT_TISSUE	0.39	1	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ASB7--TBRG4	6	5	ASB7	4324	chr15:101152632:+	TBRG4	15869	chr7:45148886:-	ONLY_REF_SPLICE	YES	8	1	0.58	0.92	0.0701	0.0584	ASB7->ankyrin_repeat_and_SOCS_box_containing_7,chr15:101142739-101191910:+,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	HS729_SOFT_TISSUE	0.58	0.92	0.1285	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CCDC124--CTC-260F20.3	7	1	CCDC124	3458	chr19:18047388:+	CTC-260F20.3	10314	chr19:19636991:+	ONLY_REF_SPLICE	YES	542	152	0.01	0.05	0.0818	0.0117	CCDC124->chr19:18043825-18054800:+,coiled-coil_domain_containing_124,CTC-260F20.3->chr19:19627036-19646885:+	HS729_SOFT_TISSUE	0.01	0.05	0.0935	FALSE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	TSC22D2--RP11-167H9.4	7	1	TSC22D2	3974	chr3:150129095:+	RP11-167H9.4	23098	chr3:149842725:+	ONLY_REF_SPLICE	YES	82	0	0.09	1	0.0818	0.0117	TSC22D2->TSC22_domain_family_member_2,chr3:150126122-150184218:+,RP11-167H9.4->chr3:149757001-149931513:+	HS729_SOFT_TISSUE	0.09	1	0.0935	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CAMTA1--ZBTB14	7	0	CAMTA1	13213	chr1:7309686:+	ZBTB14	44605	chr18:5293326:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0818	0	CAMTA1->Oncogene{Bushman},calmodulin_binding_transcription_activator_1,chr1:6845384-7829766:+,ZBTB14->chr18:5289018-5297052:-,zinc_finger_and_BTB_domain_containing_14	HS729_SOFT_TISSUE	1	1	0.0818	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MIR4435-1HG--PLGLB1	2	20	MIR4435-1HG	2571	chr2:112237484:-	PLGLB1	33083	chr2:87244811:-	ONLY_REF_SPLICE	NO	328	3	0.06	0.88	0.0234	0.2337	MIR4435-1HG->chr2:111953927-112252677:-,PLGLB1->chr2:87229682-87248975:-,plasminogen-like_B1	HS729_SOFT_TISSUE	0.06	0.88	0.2571	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	PIGK--FAM60A	6	2	PIGK	9202	chr1:77620134:-	FAM60A	25680	chr12:31451158:-	ONLY_REF_SPLICE	YES	306	18	0.03	0.31	0.0701	0.0234	PIGK->chr1:77554675-77685115:-,phosphatidylinositol_glycan_anchor_biosynthesis_class_K,FAM60A->chr12:31433518-31479992:-,family_with_sequence_similarity_60_member_A	HS729_SOFT_TISSUE	0.03	0.31	0.0935	TRUE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	MIR4435-1HG--PLGLB1	1	21	MIR4435-1HG	14499	chr2:112101638:-	PLGLB1	33083	chr2:87244811:-	ONLY_REF_SPLICE	YES	32	3	0.41	0.88	0.0117	0.2454	MIR4435-1HG->chr2:111953927-112252677:-,PLGLB1->chr2:87229682-87248975:-,plasminogen-like_B1	HS729_SOFT_TISSUE	0.41	0.88	0.2571	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	SUPT6H--CKMT2	6	1	SUPT6H	17212	chr17:27015236:+	CKMT2	34870	chr5:80546932:+	ONLY_REF_SPLICE	YES	137	0	0.05	1	0.0701	0.0117	SUPT6H->SPT6_homolog,_histone_chaperone,chr17:26989109-27029697:+,CKMT2->chr5:80529104-80562216:+,creatine_kinase,_mitochondrial_2	HS729_SOFT_TISSUE	0.05	1	0.0818	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TMEM135--GRM5-AS1	6	1	TMEM135	4604	chr11:86802437:+	GRM5-AS1	31079	chr11:88244919:+	ONLY_REF_SPLICE	YES	33	0	0.17	1	0.0701	0.0117	TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,GRM5-AS1->GRM5_antisense_RNA_1,chr11:88237744-88257222:+	HS729_SOFT_TISSUE	0.17	1	0.0818	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ANAPC1--PSD4	5	4	ANAPC1	24211	chr2:112582543:-	PSD4	76286	chr2:113965899:+	INCL_NON_REF_SPLICE	YES	35	0	0.2	1	0.0584	0.0467	ANAPC1->anaphase_promoting_complex_subunit_1,chr2:112523848-112642267:-,PSD4->chr2:113914902-113966973:+,pleckstrin_and_Sec7_domain_containing_4	HS729_SOFT_TISSUE	0.2	1	0.1051	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	SAFB--CTD-2311B13.5	6	0	SAFB	2445	chr19:5626500:+	CTD-2311B13.5	22532	chr14:19566343:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0	SAFB->chr19:5623046-5668489:+,scaffold_attachment_factor_B,CTD-2311B13.5->chr14:19562689-19566731:-	HS729_SOFT_TISSUE	1	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ZC3H7A--DDX11L2	6	0	ZC3H7A	1144	chr16:11890980:-	DDX11L2	28498	chr2:114359006:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0701	0	ZC3H7A->chr16:11844442-11891123:-,zinc_finger_CCCH-type_containing_7A,DDX11L2->DEAD/H-box_helicase_11_like_2,chr2:114356606-114359144:-	HS729_SOFT_TISSUE	1	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	COQ7--MKL2	5	3	COQ7	2280	chr16:19080200:+	MKL2	16280	chr16:14234401:+	ONLY_REF_SPLICE	YES	29	4	0.22	0.67	0.0584	0.0351	COQ7->chr16:19078921-19091417:+,coenzyme_Q7,_hydroxylase,MKL2->MKL1/myocardin_like_2,chr16:14165178-14360630:+	HS729_SOFT_TISSUE	0.22	0.67	0.0935	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	EIF5B--AC104655.2	1	19	EIF5B	9953	chr2:99993099:+	AC104655.2	27651	chr2:105715758:-	ONLY_REF_SPLICE	YES	227	0	0.08	1	0.0117	0.222	EIF5B->chr2:99953816-100017789:+,eukaryotic_translation_initiation_factor_5B,AC104655.2->chr2:105713510-105719402:-	HS729_SOFT_TISSUE	0.08	1	0.2337	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	FAM131A--SOX2-OT	1	18	FAM131A	1198	chr3:184053911:+	SOX2-OT	36057	chr3:181454163:+	ONLY_REF_SPLICE	YES	24	0	0.44	1	0.0117	0.2103	FAM131A->chr3:184053714-184064063:+,family_with_sequence_similarity_131_member_A,SOX2-OT->SOX2_overlapping_transcript,chr3:180707558-181554668:+	HS729_SOFT_TISSUE	0.44	1	0.222	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	NOP2--MED12L	5	2	NOP2	5819	chr12:6672247:-	MED12L	39876	chr3:151078262:+	ONLY_REF_SPLICE	YES	59	0	0.11	1	0.0584	0.0234	NOP2->NOP2_nucleolar_protein,chr12:6666029-6677857:-,MED12L->chr3:150803484-151154860:+,mediator_complex_subunit_12_like	HS729_SOFT_TISSUE	0.11	1	0.0818	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RP11-120D5.1--MID1	5	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	25	1	0.22	0.0584	0.0234	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HS729_SOFT_TISSUE	0.22	1	0.0818	FALSE	16	356	14	466	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	VTI1A--RP11-57H14.3	5	2	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	30	0	0.19	1	0.0584	0.0234	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HS729_SOFT_TISSUE	0.19	1	0.0818	FALSE	272	151	14	158	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	GPC6--PROSER1	5	1	GPC6	4326	chr13:94482798:+	PROSER1	21530	chr13:39605768:-	ONLY_REF_SPLICE	YES	48	39	0.11	0.13	0.0584	0.0117	GPC6->chr13:93879095-95059655:+,glypican_6,PROSER1->chr13:39584003-39612252:-,proline_and_serine_rich_1	HS729_SOFT_TISSUE	0.11	0.13	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	KIF15--MBP	4	5	KIF15	26714	chr3:44872510:+	MBP	59644	chr18:74702016:-	ONLY_REF_SPLICE	YES	28	1	0.24	0.9	0.0467	0.0584	GTEx&tcga_normals:1/3694=0.03%,KIF15->chr3:44803209-44914868:+,kinesin_family_member_15,MBP->chr18:74690783-74845639:-,myelin_basic_protein	HS729_SOFT_TISSUE	0.24	0.9	0.1051	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TET3--RHOT1	5	1	TET3	11163	chr2:74320793:+	RHOT1	45890	chr17:30551635:+	ONLY_REF_SPLICE	YES	22	85	0.21	0.07	0.0584	0.0117	TET3->chr2:74229840-74335303:+,tet_methylcytosine_dioxygenase_3,RHOT1->chr17:30469473-30580393:+,ras_homolog_family_member_T1	HS729_SOFT_TISSUE	0.07	0.21	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ZNF197-AS1--SMAD4	4	5	ZNF197-AS1	1076	chr3:44666214:-	SMAD4	20344	chr18:48584495:+	ONLY_REF_SPLICE	YES	0	150	1	0.06	0.0467	0.0584	ZNF197-AS1->ZNF197_antisense_RNA_1,chr3:44658620-44666289:-,SMAD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_4,chr18:48494410-48611415:+	HS729_SOFT_TISSUE	0.06	1	0.1051	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MT-CO1--COL3A1	5	0	MT-CO1	1605	chrM:6508:+	COL3A1	28798	chr2:189872273:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0584	0	MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1	HS729_SOFT_TISSUE	1	1	0.0584	FALSE	0	0	0	12	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	RAD18--PQLC1	5	0	RAD18	1439	chr3:9005019:-	PQLC1	36900	chr18:77679400:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0584	0	RAD18->RAD18,_E3_ubiquitin_protein_ligase,chr3:8817088-9005457:-,PQLC1->PQ_loop_repeat_containing_1,chr18:77662420-77711664:-	HS729_SOFT_TISSUE	1	1	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RP11-1E3.1--RP11-455B3.1	5	0	RP11-1E3.1	4362	chr5:97006388:+	RP11-455B3.1	7735	chr5:97217134:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0584	0	GTEx_FI:{Testis=[count:11=pct:10.5],Heart=[count:2=pct:0.8],Stomach=[count:1=pct:1.1],Nerve=[count:1=pct:0.6],Brain=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Spleen=[count:1=pct:0.9]},RP11-1E3.1->chr5:96840400-97006750:+,RP11-455B3.1->chr5:97217124-97258399:+	HS729_SOFT_TISSUE	1	1	0.0584	TRUE	13	49	2	38	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	CLOCK--HTR4	4	3	CLOCK	1357	chr4:56412949:-	HTR4	46939	chr5:147929825:-	ONLY_REF_SPLICE	YES	5	0	0.58	1	0.0467	0.0351	CLOCK->chr4:56294070-56413305:-,clock_circadian_regulator,HTR4->5-hydroxytryptamine_receptor_4,chr5:147830595-148056798:-	HS729_SOFT_TISSUE	0.58	1	0.0818	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	QKI--SECTM1	1	15	QKI	2336	chr6:163836367:+	SECTM1	35596	chr17:80282766:-	ONLY_REF_SPLICE	YES	71	40	0.18	0.29	0.0117	0.1753	QKI->ArcherDX_panel,FoundationOne_panel,QKI,_KH_domain_containing,_RNA_binding,chr6:163835032-163999628:+,SECTM1->chr17:80278900-80291950:-,secreted_and_transmembrane_1	HS729_SOFT_TISSUE	0.18	0.29	0.187	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TOM1L2--PIGL	3	7	TOM1L2	1161	chr17:17875576:-	PIGL	43971	chr17:16250864:+	INCL_NON_REF_SPLICE	YES	84	8	0.11	0.56	0.0351	0.0818	TOM1L2->chr17:17746828-17875736:-,target_of_myb1_like_2_membrane_trafficking_protein,PIGL->chr17:16120505-16252115:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_L	HS729_SOFT_TISSUE	0.11	0.56	0.1169	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ARID2--PARD6G	4	2	ARID2	2571	chr12:46125097:+	PARD6G	34285	chr18:77960815:-	ONLY_REF_SPLICE	YES	15	4	0.29	0.6	0.0467	0.0234	ARID2->AT-rich_interaction_domain_2,ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr12:46123448-46301823:+,PARD6G->chr18:77915115-78005429:-,par-6_family_cell_polarity_regulator_gamma	HS729_SOFT_TISSUE	0.29	0.6	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	LIMK1--GNGT1	4	2	LIMK1	3210	chr7:73500174:+	GNGT1	25372	chr7:93536051:+	INCL_NON_REF_SPLICE	YES	15	0	0.29	1	0.0467	0.0234	LIMK1->LIM_domain_kinase_1,Oncogene{Bushman},chr7:73497263-73536855:+,GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+	HS729_SOFT_TISSUE	0.29	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	LIMK1--GNGT1	4	2	LIMK1	3210	chr7:73500174:+	GNGT1	25369	chr7:93536048:+	ONLY_REF_SPLICE	YES	15	0	0.29	1	0.0467	0.0234	LIMK1->LIM_domain_kinase_1,Oncogene{Bushman},chr7:73497263-73536855:+,GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+	HS729_SOFT_TISSUE	0.29	1	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MPV17L2--SYCE2	4	2	MPV17L2	2905	chr19:18305896:+	SYCE2	11004	chr19:13015480:-	ONLY_REF_SPLICE	YES	112	13	0.05	0.32	0.0467	0.0234	MPV17L2->MPV17_mitochondrial_inner_membrane_protein_like_2,chr19:18303992-18307758:+,SYCE2->chr19:13009600-13030090:-,synaptonemal_complex_central_element_protein_2	HS729_SOFT_TISSUE	0.05	0.32	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MT-ND6--MT-TE	3	6	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0.0701	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS729_SOFT_TISSUE	1	1	0.1052	FALSE	499	1288	110	792	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	RFXANK--WDR83OS	4	2	RFXANK	6207	chr19:19310043:+	WDR83OS	13998	chr19:12779431:-	ONLY_REF_SPLICE	YES	104	874	0.05	0.01	0.0467	0.0234	RFXANK->chr19:19303008-19312678:+,regulatory_factor_X_associated_ankyrin_containing_protein,WDR83OS->WD_repeat_domain_83_opposite_strand,chr19:12778885-12782170:-	HS729_SOFT_TISSUE	0.01	0.05	0.0701	FALSE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	RP11-695J4.2--STK38L	4	2	RP11-695J4.2	1443	chr12:14721126:+	STK38L	16585	chr12:27461272:+	ONLY_REF_SPLICE	YES	1	85	0.86	0.07	0.0467	0.0234	RP11-695J4.2->chr12:14720684-14772689:+,STK38L->Oncogene{Bushman},chr12:27396901-27478892:+,serine/threonine_kinase_38_like	HS729_SOFT_TISSUE	0.07	0.86	0.0701	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	COL1A1--NPM1	4	1	COL1A1	13029	chr17:48266746:-	NPM1	22878	chr5:170814872:+	INCL_NON_REF_SPLICE	YES	7660	1	0	0.83	0.0467	0.0117	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HS729_SOFT_TISSUE	0	0.83	0.0584	FALSE	0	0	0	31	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	COQ7--MKL2	4	1	COQ7	1139	chr16:19079059:+	MKL2	16280	chr16:14234401:+	ONLY_REF_SPLICE	YES	20	4	0.2	0.56	0.0467	0.0117	COQ7->chr16:19078921-19091417:+,coenzyme_Q7,_hydroxylase,MKL2->MKL1/myocardin_like_2,chr16:14165178-14360630:+	HS729_SOFT_TISSUE	0.2	0.56	0.0584	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CTGF--RPS28	4	0	CTGF	1159	chr6:132272355:-	RPS28	7541	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0467	0	GTEx&tcga_normals:1/3694=0.03%,CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	HS729_SOFT_TISSUE	1	1	0.0467	TRUE	0	0	0	5	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MT-ND6--MT-TE	4	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0467	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HS729_SOFT_TISSUE	1	1	0.0467	FALSE	499	1288	110	792	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	RASA3--GAS6	3	4	RASA3	17349	chr13:114776647:-	GAS6	43009	chr13:114530137:-	ONLY_REF_SPLICE	YES	162	546	0.04	0.01	0.0351	0.0467	RASA3->Oncogene{Bushman},RAS_p21_protein_activator_3,chr13:114747194-114898086:-,GAS6->Oncogene{Bushman},chr13:114523522-114567046:-,growth_arrest_specific_6	HS729_SOFT_TISSUE	0.01	0.04	0.0818	FALSE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	RP11-254I22.1--CTD-2337A12.1	4	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	10446	chr5:95715270:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0467	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HS729_SOFT_TISSUE	1	1	0.0467	TRUE	0	2	1	13	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	TNS3--CTA-293F17.1	4	0	TNS3	1508	chr7:47621649:-	CTA-293F17.1	49726	chr7:20369405:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0467	0	TNS3->chr7:47314752-47622156:-,tensin_3,CTA-293F17.1->chr7:20367922-20371370:-	HS729_SOFT_TISSUE	1	1	0.0467	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	C11orf58--PTGIS	2	7	C11orf58	12485	chr11:16774441:+	PTGIS	22880	chr20:48160985:-	ONLY_REF_SPLICE	YES	722	47	0.01	0.16	0.0234	0.0818	C11orf58->chr11:16634679-16778428:+,chromosome_11_open_reading_frame_58,PTGIS->Oncogene{Bushman},chr20:48120411-48184683:-,prostaglandin_I2_(prostacyclin)_synthase	HS729_SOFT_TISSUE	0.01	0.16	0.1052	TRUE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	GTF3C4--ADAMTS13	3	3	GTF3C4	4748	chr9:135555190:+	ADAMTS13	20499	chr9:136289441:+	ONLY_REF_SPLICE	YES	67	3	0.08	0.67	0.0351	0.0351	GTF3C4->chr9:135545422-135570342:+,general_transcription_factor_IIIC_subunit_4,ADAMTS13->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_13,chr9:136279478-136324508:+	HS729_SOFT_TISSUE	0.08	0.67	0.0702	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ITGB8--ABCB5	3	3	ITGB8	11696	chr7:20420454:+	ABCB5	60472	chr7:20792983:+	ONLY_REF_SPLICE	YES	27	0	0.18	1	0.0351	0.0351	ITGB8->chr7:20370325-20455377:+,integrin_subunit_beta_8,ABCB5->ATP_binding_cassette_subfamily_B_member_5,Oncogene{Bushman},chr7:20654830-20816658:+	HS729_SOFT_TISSUE	0.18	1	0.0702	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	NFASC--CD9	2	7	NFASC	1132	chr1:204797910:+	CD9	60079	chr12:6334592:+	ONLY_REF_SPLICE	YES	0	125	1	0.07	0.0234	0.0818	NFASC->chr1:204797779-204991950:+,neurofascin,CD9->CD9_molecule,Oncogene{Bushman},chr12:6308881-6347425:+	HS729_SOFT_TISSUE	0.07	1	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RP11-444D3.1--SOX5	3	3	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0.0351	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HS729_SOFT_TISSUE	1	1	0.0702	TRUE	274	363	69	150	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	ZNF738--CHMP1A	3	3	ZNF738	7035	chr19:21558766:+	CHMP1A	18151	chr16:89713739:-	ONLY_REF_SPLICE	YES	29	211	0.17	0.03	0.0351	0.0351	GTEx_FI:{Lung=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2]},GTEx_v2:{count=8;pct=0.09%;dist=Breast_-_Mammary_Tissue=1,Ovary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Brain_-_Cerebellum=1,Cells_-_Transformed_fibroblasts=1,Colon_-_Transverse=1},ZNF738->chr19:21541732-21562104:+,zinc_finger_protein_738,CHMP1A->charged_multivesicular_body_protein_1A,chr16:89710839-89724253:-	HS729_SOFT_TISSUE	0.03	0.17	0.0702	TRUE	1	20	1	28	3	FALSE	ACH-000133
HS729_SOFT_TISSUE	CACHD1--RP4-794H19.1	3	2	CACHD1	7258	chr1:65068595:+	RP4-794H19.1	37258	chr1:59361681:-	ONLY_REF_SPLICE	NO	20	0	0.2	1	0.0351	0.0234	CACHD1->cache_domain_containing_1,chr1:64936428-65158741:+,RP4-794H19.1->chr1:59348540-59362375:-	HS729_SOFT_TISSUE	0.2	1	0.0585	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	COL16A1--COL1A1	3	2	COL16A1	38837	chr1:32122658:-	COL1A1	57504	chr17:48267918:-	INCL_NON_REF_SPLICE	NO	343	7470	0.01	0	0.0351	0.0234	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS729_SOFT_TISSUE	0	0.01	0.0585	FALSE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	FSTL1--ZBTB20	3	2	FSTL1	14059	chr3:120121655:-	ZBTB20	59781	chr3:114099251:-	ONLY_REF_SPLICE	YES	1414	2	0	0.71	0.0351	0.0234	FSTL1->chr3:120111140-120170100:-,follistatin_like_1,ZBTB20->chr3:114056941-114866118:-,zinc_finger_and_BTB_domain_containing_20	HS729_SOFT_TISSUE	0	0.71	0.0585	FALSE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	NRIP1--AF127936.7	3	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	24	0	0.17	1	0.0351	0.0234	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS729_SOFT_TISSUE	0.17	1	0.0585	FALSE	164	806	69	479	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	RAD52--RP11-64D22.5	3	2	RAD52	1245	chr12:1098975:-	RP11-64D22.5	18906	chr3:151521494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0.0234	RAD52->Oncogene{Bushman},RAD52_homolog,_DNA_repair_protein,chr12:1021243-1099219:-,RP11-64D22.5->chr3:151515272-151526037:+	HS729_SOFT_TISSUE	1	1	0.0585	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ZDHHC3--MIR1302-10	2	6	ZDHHC3	7478	chr3:44974610:-	MIR1302-10	21914	chr15:102500601:-	ONLY_REF_SPLICE	YES	171	0	0.04	1	0.0234	0.0701	ZDHHC3->Oncogene{Bushman},chr3:44956749-45017677:-,zinc_finger_DHHC-type_containing_3,MIR1302-10->chr15:102500051-102501611:-,microRNA_1302-10	HS729_SOFT_TISSUE	0.04	1	0.0935	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CTD-2152M20.2--GOLPH3	3	1	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	39	1	0.09	0.0351	0.0117	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	HS729_SOFT_TISSUE	0.09	1	0.0468	TRUE	10	26	2	24	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	GLCCI1--BMPER	3	1	GLCCI1	8900	chr7:8099878:+	BMPER	43007	chr7:34182842:+	ONLY_REF_SPLICE	YES	11	26	0.27	0.13	0.0351	0.0117	GLCCI1->chr7:8008425-8133902:+,glucocorticoid_induced_1,BMPER->BMP_binding_endothelial_regulator,chr7:33944523-34195484:+	HS729_SOFT_TISSUE	0.13	0.27	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	NRIP1--AF127936.7	3	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	16	0	0.2	1	0.0351	0.0117	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HS729_SOFT_TISSUE	0.2	1	0.0468	FALSE	125	705	46	456	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	PQLC1--DCLK3	3	1	PQLC1	14051	chr18:77679184:-	DCLK3	28408	chr3:36757012:-	ONLY_REF_SPLICE	YES	41	9	0.09	0.31	0.0351	0.0117	PQLC1->PQ_loop_repeat_containing_1,chr18:77662420-77711664:-,DCLK3->chr3:36753913-36781352:-,doublecortin_like_kinase_3	HS729_SOFT_TISSUE	0.09	0.31	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RP11-223C24.1--GPRC5A	3	1	RP11-223C24.1	2344	chr4:143504776:+	GPRC5A	8774	chr12:13061177:+	ONLY_REF_SPLICE	YES	0	126	1	0.03	0.0351	0.0117	RP11-223C24.1->chr4:143487172-143582103:+,GPRC5A->G_protein-coupled_receptor_class_C_group_5_member_A,chr12:13043716-13070871:+	HS729_SOFT_TISSUE	0.03	1	0.0468	TRUE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	TMEM135--GRM5-AS1	3	1	TMEM135	3570	chr11:86782657:+	GRM5-AS1	31079	chr11:88244919:+	ONLY_REF_SPLICE	YES	30	0	0.12	1	0.0351	0.0117	TMEM135->chr11:86748886-87034800:+,transmembrane_protein_135,GRM5-AS1->GRM5_antisense_RNA_1,chr11:88237744-88257222:+	HS729_SOFT_TISSUE	0.12	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ZDHHC3--MIR1302-10	2	5	ZDHHC3	7689	chr3:44974399:-	MIR1302-10	22330	chr15:102500185:-	ONLY_REF_SPLICE	YES	169	0	0.04	1	0.0234	0.0584	ZDHHC3->Oncogene{Bushman},chr3:44956749-45017677:-,zinc_finger_DHHC-type_containing_3,MIR1302-10->chr15:102500051-102501611:-,microRNA_1302-10	HS729_SOFT_TISSUE	0.04	1	0.0818	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	COL16A1--COL1A1	3	0	COL16A1	26222	chr1:32137216:-	COL1A1	60524	chr17:48264898:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,HGNC_GENEFAM,PROTCLUST,COL16A1->Oncogene{Bushman},chr1:32117848-32169920:-,collagen_type_XVI_alpha_1,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1	HS729_SOFT_TISSUE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CTGF--S100A6	3	0	CTGF	1143	chr6:132272371:-	S100A6	7448	chr1:153508471:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0351	0	CTGF->Oncogene{Bushman},chr6:132269316-132272513:-,connective_tissue_growth_factor,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HS729_SOFT_TISSUE	1	1	0.0351	TRUE	0	0	0	2	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	DCC--RNF165	3	0	DCC	1707	chr18:49867248:+	RNF165	60121	chr18:44027526:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	DCC->DCC_netrin_1_receptor,Oncogene{Bushman},chr18:49866542-51057784:+,RNF165->chr18:43906772-44043103:+,ring_finger_protein_165	HS729_SOFT_TISSUE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	DNAJC25--UGCG	3	0	DNAJC25	8718	chr9:114429226:+	UGCG	15224	chr9:114676885:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx_FI:{Brain=[count:20=pct:3.0],Blood=[count:10=pct:5.7],Blood_Vessel=[count:4=pct:1.1],Ovary=[count:3=pct:5.7],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Whole_Blood=[count:2=pct:1.5],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Vagina=[count:1=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Breast=[count:1=pct:0.9]},DNAJC25->DnaJ_heat_shock_protein_family_(Hsp40)_member_C25,chr9:114393632-114432508:+,UGCG->UDP-glucose_ceramide_glucosyltransferase,chr9:114659046-114697649:+	HS729_SOFT_TISSUE	1	1	0.0351	TRUE	50	73	10	50	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	JARID2--SMIM15	1	8	JARID2	2342	chr6:15249195:+	SMIM15	28224	chr5:60458186:-	ONLY_REF_SPLICE	YES	30	4	0.23	0.69	0.0117	0.0935	JARID2->chr6:15246527-15522252:+,jumonji_and_AT-rich_interaction_domain_containing_2,SMIM15->chr5:60453536-60458301:-,small_integral_membrane_protein_15	HS729_SOFT_TISSUE	0.23	0.69	0.1052	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	PDZD2--DROSHA	3	0	PDZD2	23443	chr5:32061240:+	DROSHA	81047	chr5:31424578:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	PDZD2->PDZ_domain_containing_2,chr5:31639517-32111037:+,DROSHA->chr5:31400604-31532303:-,drosha_ribonuclease_III	HS729_SOFT_TISSUE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RAD18--DCLK3	3	0	RAD18	1439	chr3:9005019:-	DCLK3	31083	chr3:36757012:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	RAD18->RAD18,_E3_ubiquitin_protein_ligase,chr3:8817088-9005457:-,DCLK3->chr3:36753913-36781352:-,doublecortin_like_kinase_3	HS729_SOFT_TISSUE	1	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RP11-254I22.1--CTD-2337A12.1	3	0	RP11-254I22.1	1087	chr5:95385905:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0351	0	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HS729_SOFT_TISSUE	1	1	0.0351	TRUE	4	2	0	28	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	ANO2--TRPC3	2	2	ANO2	3594	chr12:6030206:-	TRPC3	44803	chr4:122854197:-	ONLY_REF_SPLICE	YES	13	0	0.24	1	0.0234	0.0234	ANO2->anoctamin_2,chr12:5641035-6055398:-,TRPC3->chr4:122800182-122872909:-,transient_receptor_potential_cation_channel_subfamily_C_member_3	HS729_SOFT_TISSUE	0.24	1	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	NCEH1--YEATS2	2	2	NCEH1	1372	chr3:172428637:-	YEATS2	22724	chr3:183469861:+	ONLY_REF_SPLICE	NO	33	38	0.11	0.1	0.0234	0.0234	NCEH1->chr3:172348039-172429008:-,neutral_cholesterol_ester_hydrolase_1,YEATS2->YEATS_domain_containing_2,chr3:183415606-183530413:+	HS729_SOFT_TISSUE	0.1	0.11	0.0468	TRUE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	UTY--DOCK5	2	2	UTY	29146	chrY:15409587:-	DOCK5	38444	chr8:25101190:+	ONLY_REF_SPLICE	YES	12	9	0.25	0.31	0.0234	0.0234	UTY->chrY:15360259-15592553:-,ubiquitously_transcribed_tetratricopeptide_repeat_containing,_Y-linked,DOCK5->chr8:25042238-25275598:+,dedicator_of_cytokinesis_5	HS729_SOFT_TISSUE	0.25	0.31	0.0468	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ZDHHC3--MIR1302-10	1	6	ZDHHC3	7689	chr3:44974399:-	MIR1302-10	21914	chr15:102500601:-	ONLY_REF_SPLICE	YES	169	0	0.04	1	0.0117	0.0701	ZDHHC3->Oncogene{Bushman},chr3:44956749-45017677:-,zinc_finger_DHHC-type_containing_3,MIR1302-10->chr15:102500051-102501611:-,microRNA_1302-10	HS729_SOFT_TISSUE	0.04	1	0.0818	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ZNF197-AS1--SMAD4	2	2	ZNF197-AS1	1076	chr3:44666214:-	SMAD4	21676	chr18:48586236:+	ONLY_REF_SPLICE	YES	0	144	1	0.03	0.0234	0.0234	ZNF197-AS1->ZNF197_antisense_RNA_1,chr3:44658620-44666289:-,SMAD4->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},SMAD_family_member_4,chr18:48494410-48611415:+	HS729_SOFT_TISSUE	0.03	1	0.0468	TRUE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	CCBL2--RP11-206L10.11	2	1	CCBL2	1369	chr1:89458268:-	RP11-206L10.11	25680	chr1:787307:+	ONLY_REF_SPLICE	YES	32	21	0.09	0.12	0.0234	0.0117	CCBL2->chr1:89401456-89458636:-,RP11-206L10.11->chr1:762988-794826:+	HS729_SOFT_TISSUE	0.09	0.12	0.0351	TRUE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	CDH13--RP11-22H5.2	2	1	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	71	0	0.04	1	0.0234	0.0117	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	HS729_SOFT_TISSUE	0.04	1	0.0351	FALSE	14	31	0	36	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	GPC6--PROSER1	2	1	GPC6	4326	chr13:94482798:+	PROSER1	20386	chr13:39608333:-	ONLY_REF_SPLICE	YES	48	24	0.06	0.11	0.0234	0.0117	GPC6->chr13:93879095-95059655:+,glypican_6,PROSER1->chr13:39584003-39612252:-,proline_and_serine_rich_1	HS729_SOFT_TISSUE	0.06	0.11	0.0351	TRUE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	LIMK1--AC002076.10	2	1	LIMK1	3210	chr7:73500174:+	AC002076.10	24065	chr7:93522554:+	ONLY_REF_SPLICE	YES	15	0	0.17	1	0.0234	0.0117	LIMK1->LIM_domain_kinase_1,Oncogene{Bushman},chr7:73497263-73536855:+,AC002076.10->chr7:93520225-93522913:+	HS729_SOFT_TISSUE	0.17	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	POLE4--RP11-355F16.1	2	1	POLE4	2655	chr2:75187273:+	RP11-355F16.1	11052	chr2:75413956:+	ONLY_REF_SPLICE	YES	281	0	0.01	1	0.0234	0.0117	GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:2=pct:0.7],Nerve=[count:1=pct:0.6],Lung=[count:1=pct:0.6]},POLE4->chr2:75185619-75197255:+,polymerase_(DNA)_epsilon_4,_accessory_subunit,RP11-355F16.1->chr2:75381492-75417075:+	HS729_SOFT_TISSUE	0.01	1	0.0351	FALSE	5	7	0	37	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	PRKAR1B--WRN	2	1	PRKAR1B	9970	chr7:720193:-	WRN	49084	chr8:30998946:+	ONLY_REF_SPLICE	YES	13	17	0.19	0.15	0.0234	0.0117	PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta,WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+	HS729_SOFT_TISSUE	0.15	0.19	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	PRKAR1B--WRN	2	1	PRKAR1B	11062	chr7:716866:-	WRN	49084	chr8:30998946:+	ONLY_REF_SPLICE	YES	17	17	0.15	0.15	0.0234	0.0117	PRKAR1B->chr7:588834-767287:-,protein_kinase_cAMP-dependent_type_I_regulatory_subunit_beta,WRN->Oncogene{Bushman},Werner_syndrome_RecQ_like_helicase,chr8:30891317-31031285:+	HS729_SOFT_TISSUE	0.15	0.15	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	SLCO3A1--ASB5	2	1	SLCO3A1	13963	chr15:92671719:+	ASB5	31981	chr4:177190348:-	ONLY_REF_SPLICE	YES	14	0	0.18	1	0.0234	0.0117	SLCO3A1->chr15:92396925-92715665:+,solute_carrier_organic_anion_transporter_family_member_3A1,ASB5->ankyrin_repeat_and_SOCS_box_containing_5,chr4:177134824-177198722:-	HS729_SOFT_TISSUE	0.18	1	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	TSC22D2--RP11-167H9.6	2	1	TSC22D2	3974	chr3:150129095:+	RP11-167H9.6	20194	chr3:149956722:+	ONLY_REF_SPLICE	YES	82	1	0.04	0.75	0.0234	0.0117	TSC22D2->TSC22_domain_family_member_2,chr3:150126122-150184218:+,RP11-167H9.6->chr3:149956306-149957996:+	HS729_SOFT_TISSUE	0.04	0.75	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	AP003419.11--CORO1B	2	0	AP003419.11	1061	chr11:67140995:-	CORO1B	7759	chr11:67210101:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	LOCAL_REARRANGEMENT:-:[64464],AP003419.11->chr11:67119043-67141055:-,CORO1B->chr11:67205519-67211292:-,coronin_1B	HS729_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	BMPER--CPVL	2	0	BMPER	21437	chr7:34182972:+	CPVL	42804	chr7:29112039:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	BMPER->BMP_binding_endothelial_regulator,chr7:33944523-34195484:+,CPVL->carboxypeptidase,_vitellogenic_like,chr7:29034847-29235067:-	HS729_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CHSY3--CTD-2410N18.5	2	0	CHSY3	3444	chr5:129244053:+	CTD-2410N18.5	12251	chr5:133509713:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	CHSY3->chondroitin_sulfate_synthase_3,chr5:129240165-129522327:+,CTD-2410N18.5->chr5:133502861-133561762:-	HS729_SOFT_TISSUE	1	1	0.0234	TRUE	1	0	0	2	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CKAP5--AES	2	0	CKAP5	7383	chr11:46832557:-	AES	47597	chr19:3061255:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	CKAP5->chr11:46764598-46867847:-,cytoskeleton_associated_protein_5,AES->amino-terminal_enhancer_of_split,chr19:3052908-3063105:-	HS729_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CTD-2337A12.1--CAST	2	0	CTD-2337A12.1	3267	chr5:95654248:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS729_SOFT_TISSUE	1	1	0.0234	TRUE	0	4	0	5	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	EML1--MSH2	2	0	EML1	1168	chr14:100204197:+	MSH2	49011	chr2:47672687:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	EML1->chr14:100204030-100408397:+,echinoderm_microtubule_associated_protein_like_1,MSH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:47630108-47789450:+,mutS_homolog_2	HS729_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	EXOSC3--MYRIP	2	0	EXOSC3	1771	chr9:37800664:-	MYRIP	19427	chr3:40192539:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	EXOSC3->chr9:37766975-37801434:-,exosome_component_3,MYRIP->chr3:39850405-40301812:+,myosin_VIIA_and_Rab_interacting_protein	HS729_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	PPP4R1L--GNAS	2	0	PPP4R1L	1214	chr20:56884282:-	GNAS	41042	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0234	0	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},PPP4R1L->chr20:56806188-56884495:-,protein_phosphatase_4_regulatory_subunit_1_like_(pseudogene),GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HS729_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	RP4-565E6.1--HYDIN	1	3	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	30586	chr16:71186686:-	ONLY_REF_SPLICE	YES	1	7	0.8	0.36	0.0117	0.0351	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	HS729_SOFT_TISSUE	0.36	0.8	0.0468	TRUE	84	87	4	41	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	ASB7--TBRG4	1	2	ASB7	4324	chr15:101152632:+	TBRG4	15913	chr7:45148842:-	ONLY_REF_SPLICE	YES	8	13	0.27	0.19	0.0117	0.0234	ASB7->ankyrin_repeat_and_SOCS_box_containing_7,chr15:101142739-101191910:+,TBRG4->chr7:45139699-45151646:-,transforming_growth_factor_beta_regulator_4	HS729_SOFT_TISSUE	0.19	0.27	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CD44--PDHX	1	2	CD44	6502	chr11:35211612:+	PDHX	32715	chr11:34952951:+	ONLY_REF_SPLICE	YES	1100	108	0	0.03	0.0117	0.0234	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HS729_SOFT_TISSUE	0	0.03	0.0351	FALSE	0	20	0	35	2	FALSE	ACH-000133
HS729_SOFT_TISSUE	CTD-2337A12.1--CAST	1	2	CTD-2337A12.1	7488	chr5:95966789:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	54	1	0.05	0.0117	0.0234	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HS729_SOFT_TISSUE	0.05	1	0.0351	TRUE	18	50	10	12	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	TNKS--ZNF595	1	2	TNKS	9191	chr8:9473187:+	ZNF595	50027	chr4:59323:+	ONLY_REF_SPLICE	YES	30	19	0.09	0.14	0.0117	0.0234	TNKS->chr8:9413424-9639856:+,tankyrase,ZNF595->chr4:53179-88099:+,zinc_finger_protein_595	HS729_SOFT_TISSUE	0.09	0.14	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	ZNF627--MARCH2	1	2	ZNF627	6303	chr19:11708445:+	MARCH2	17123	chr19:8483626:+	ONLY_REF_SPLICE	YES	25	15	0.11	0.17	0.0117	0.0234	ZNF627->chr19:11670189-11729950:+,zinc_finger_protein_627,MARCH2->chr19:8478154-8503901:+,membrane_associated_ring-CH-type_finger_2	HS729_SOFT_TISSUE	0.11	0.17	0.0351	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	BZW2--NPSR1-AS1	1	1	BZW2	15870	chr7:16737811:+	NPSR1-AS1	35801	chr7:34609473:-	ONLY_REF_SPLICE	YES	135	0	0.01	1	0.0117	0.0117	BZW2->basic_leucine_zipper_and_W2_domains_2,chr7:16685756-16746148:+,NPSR1-AS1->NPSR1_antisense_RNA_1,chr7:34386124-34911194:-	HS729_SOFT_TISSUE	0.01	1	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	CACHD1--RP4-794H19.1	1	1	CACHD1	9416	chr1:65095164:+	RP4-794H19.1	39483	chr1:59349406:-	ONLY_REF_SPLICE	YES	9	8	0.18	0.2	0.0117	0.0117	CACHD1->cache_domain_containing_1,chr1:64936428-65158741:+,RP4-794H19.1->chr1:59348540-59362375:-	HS729_SOFT_TISSUE	0.18	0.2	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CD44--PDHX	1	1	CD44	1501	chr11:35160917:+	PDHX	42230	chr11:35013862:+	ONLY_REF_SPLICE	YES	1319	86	0	0.02	0.0117	0.0117	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Pancreas=1},{Klijn_CCL:Head-Neck=2,Lung=1,Colo-Rectal=1},CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X	HS729_SOFT_TISSUE	0	0.02	0.0234	FALSE	0	0	0	3	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	CDH13--RP11-22H5.2	1	1	CDH13	3588	chr16:82673070:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	85	0	0.02	1	0.0117	0.0117	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	HS729_SOFT_TISSUE	0.02	1	0.0234	FALSE	0	2	0	10	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	CDH13--RP11-22H5.2	1	1	CDH13	2482	chr16:82671372:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	83	0	0.02	1	0.0117	0.0117	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	HS729_SOFT_TISSUE	0.02	1	0.0234	FALSE	0	5	0	7	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	CENPK--ADAMTS6	1	1	CENPK	11321	chr5:64824944:-	ADAMTS6	37149	chr5:64538033:-	ONLY_REF_SPLICE	YES	139	41	0.01	0.05	0.0117	0.0117	NEIGHBORS[35846],CENPK->centromere_protein_K,chr5:64813593-64858998:-,ADAMTS6->ADAM_metallopeptidase_with_thrombospondin_type_1_motif_6,chr5:64444563-64777747:-	HS729_SOFT_TISSUE	0.01	0.05	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	CPPED1--CTD-3088G3.8	1	1	CPPED1	4167	chr16:12798481:-	CTD-3088G3.8	16183	chr16:11602711:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0117	0.0117	CPPED1->calcineurin_like_phosphoesterase_domain_containing_1,chr16:12756919-12897874:-,CTD-3088G3.8->chr16:11453702-11617444:-	HS729_SOFT_TISSUE	1	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	CTD-2152M20.2--GOLPH3	1	1	CTD-2152M20.2	1447	chr5:32121601:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	39	1	0.05	0.0117	0.0117	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	HS729_SOFT_TISSUE	0.05	1	0.0234	TRUE	6	16	0	6	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	EVI5--RP11-436K8.1	1	1	EVI5	15736	chr1:93128276:-	RP11-436K8.1	33271	chr1:61199194:-	ONLY_REF_SPLICE	YES	42	0	0.05	1	0.0117	0.0117	EVI5->chr1:92974253-93257961:-,ecotropic_viral_integration_site_5,RP11-436K8.1->chr1:61125303-61291256:-	HS729_SOFT_TISSUE	0.05	1	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	MPRIP--CCDC144A	1	1	MPRIP	1427	chr17:16946285:+	CCDC144A	70454	chr17:16664739:+	ONLY_REF_SPLICE	YES	28	10	0.07	0.17	0.0117	0.0117	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,CCDC144A->chr17:16592851-16707767:+,coiled-coil_domain_containing_144A	HS729_SOFT_TISSUE	0.07	0.17	0.0234	TRUE	0	1	0	1	1	TRUE	ACH-000133
HS729_SOFT_TISSUE	MPRIP--RP11-434D9.1	1	1	MPRIP	4886	chr17:16981390:+	RP11-434D9.1	56747	chr5:67093457:+	ONLY_REF_SPLICE	YES	236	0	0.01	1	0.0117	0.0117	MPRIP->chr17:16945859-17120993:+,myosin_phosphatase_Rho_interacting_protein,RP11-434D9.1->chr5:66675206-67101066:+	HS729_SOFT_TISSUE	0.01	1	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	TGFBR2--STT3B	1	1	TGFBR2	1476	chr3:30648469:+	STT3B	21217	chr3:31641852:+	ONLY_REF_SPLICE	YES	30	219	0.06	0.01	0.0117	0.0117	TGFBR2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr3:30647994-30735634:+,transforming_growth_factor_beta_receptor_2,STT3B->STT3B,_catalytic_subunit_of_the_oligosaccharyltransferase_complex,chr3:31574130-31679112:+	HS729_SOFT_TISSUE	0.01	0.06	0.0234	FALSE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	TSC22D2--RP11-167H9.4	1	1	TSC22D2	3974	chr3:150129095:+	RP11-167H9.4	24191	chr3:149868298:+	ONLY_REF_SPLICE	YES	82	0	0.02	1	0.0117	0.0117	TSC22D2->TSC22_domain_family_member_2,chr3:150126122-150184218:+,RP11-167H9.4->chr3:149757001-149931513:+	HS729_SOFT_TISSUE	0.02	1	0.0234	TRUE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	ULK4--SUSD5	1	1	ULK4	36764	chr3:41657160:-	SUSD5	54367	chr3:33195525:-	ONLY_REF_SPLICE	YES	5	15	0.29	0.12	0.0117	0.0117	ULK4->chr3:41288090-42003922:-,unc-51_like_kinase_4,SUSD5->chr3:33191537-33260707:-,sushi_domain_containing_5	HS729_SOFT_TISSUE	0.12	0.29	0.0234	TRUE	0	0	0	1	0	TRUE	ACH-000133
HS729_SOFT_TISSUE	VPS41--AC004870.3	1	1	VPS41	10729	chr7:38857417:-	AC004870.3	45604	chr7:47040959:-	ONLY_REF_SPLICE	YES	86	0	0.02	1	0.0117	0.0117	VPS41->VPS41,_HOPS_complex_subunit,chr7:38762563-38971994:-,AC004870.3->chr7:47040218-47118726:-	HS729_SOFT_TISSUE	0.02	1	0.0234	TRUE	0	0	0	1	0	FALSE	ACH-000133
HS729_SOFT_TISSUE	VTI1A--RP11-57H14.3	1	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	25543	chr10:114665736:+	ONLY_REF_SPLICE	YES	30	0	0.06	1	0.0117	0.0117	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	HS729_SOFT_TISSUE	0.06	1	0.0234	FALSE	28	14	1	23	0	FALSE	ACH-000133
SKNEP1_BONE	EWSR1--FLI1	201	126	EWSR1	11554	chr22:29683123:+	FLI1	35098	chr11:128651853:+	ONLY_REF_SPLICE	YES	424	0	0.44	1	3.2175	2.017	Cosmic{samples=2132,mutations=1332,papers=162},Mitelman{SA_Ewing=14},{Klijn_CCL:Sarcomatoid=3},EWSR1->EWS_RNA_binding_protein_1,Oncogene{Bushman},chr22:29663998-29696515:+,FLI1->Fli-1_proto-oncogene,_ETS_transcription_factor,Oncogene{Bushman},chr11:128556430-128683162:+	SKNEP1_BONE	0.44	1	5.2345	TRUE	0	0	0	5	0	TRUE	ACH-001192
SKNEP1_BONE	KANSL1--ARL17B	141	117	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	86	54	0.75	0.83	2.2571	1.8729	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SKNEP1_BONE	0.75	0.83	4.13	TRUE	181	1564	124	196	0	FALSE	ACH-001192
SKNEP1_BONE	TIMM23B--LINC00843	95	21	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.5207	0.3362	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SKNEP1_BONE	1	1	1.8569	TRUE	508	994	45	981	0	FALSE	ACH-001192
SKNEP1_BONE	TIMM23--RP11-464F9.1	58	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	191	4	0.24	0.94	0.9284	0.032	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SKNEP1_BONE	0.24	0.94	0.9604	TRUE	519	3926	326	965	0	FALSE	ACH-001192
SKNEP1_BONE	OR51S1--TP53I11	33	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5283	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	SKNEP1_BONE	1	1	0.5283	TRUE	402	216	10	229	0	FALSE	ACH-001192
SKNEP1_BONE	RP11-123O10.4--GRIP1	19	8	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3041	0.1281	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SKNEP1_BONE	1	1	0.4322	FALSE	416	2512	207	587	0	FALSE	ACH-001192
SKNEP1_BONE	MT-ND4--MT-ND4L	4	64	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	80	0	0.46	1	0.064	1.0245	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKNEP1_BONE	0.46	1	1.0885	FALSE	344	826	44	306	0	FALSE	ACH-001192
SKNEP1_BONE	ZNF654--HMGB2	19	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3041	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	SKNEP1_BONE	1	1	0.3041	TRUE	0	0	0	518	0	FALSE	ACH-001192
SKNEP1_BONE	MT-TA--MT-TC	15	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2401	0.016	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SKNEP1_BONE	1	1	0.2561	FALSE	462	80	0	856	0	FALSE	ACH-001192
SKNEP1_BONE	KANSL1--ARL17B	3	45	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	86	43	0.36	0.53	0.048	0.7203	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SKNEP1_BONE	0.36	0.53	0.7683	TRUE	20	16	0	28	0	FALSE	ACH-001192
SKNEP1_BONE	RP11-680G10.1--GSE1	13	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	43	1	0.3	0.2081	0.08	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKNEP1_BONE	0.3	1	0.2881	TRUE	465	1949	224	605	0	FALSE	ACH-001192
SKNEP1_BONE	MT-ND4--MT-ND4L	10	15	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	7237	0	0	1	0.1601	0.2401	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SKNEP1_BONE	0	1	0.4002	FALSE	328	800	43	304	0	FALSE	ACH-001192
SKNEP1_BONE	NPM1P24--SET	13	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2081	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNEP1_BONE	1	1	0.2081	TRUE	0	0	0	434	0	FALSE	ACH-001192
SKNEP1_BONE	KANSL1--ARL17B	2	30	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	99	54	0.24	0.37	0.032	0.4802	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SKNEP1_BONE	0.24	0.37	0.5122	TRUE	105	90	7	93	0	FALSE	ACH-001192
SKNEP1_BONE	RP11-680G10.1--GSE1	6	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	14	1	0.5	0.096	0.1281	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SKNEP1_BONE	0.5	1	0.2241	TRUE	458	1351	185	561	0	FALSE	ACH-001192
SKNEP1_BONE	GNGT1--AC002076.10	7	0	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1121	0	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	SKNEP1_BONE	1	1	0.1121	FALSE	0	28	0	37	0	FALSE	ACH-001192
SKNEP1_BONE	GNGT1--AC002076.10	5	0	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.08	0	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	SKNEP1_BONE	1	1	0.08	FALSE	0	10	0	30	0	FALSE	ACH-001192
SKNEP1_BONE	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.08	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	SKNEP1_BONE	1	1	0.08	TRUE	0	0	0	434	0	FALSE	ACH-001192
SKNEP1_BONE	RCC1--EEF1D	4	0	RCC1	2175	chr1:28834672:+	EEF1D	30004	chr8:144669022:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.064	0	GTEx_v2:{count=5;pct=0.06%;dist=Cells_-_EBV-transformed_lymphocytes=3,Lung=1,Cells_-_Transformed_fibroblasts=1},RCC1->chr1:28832455-28865812:+,regulator_of_chromosome_condensation_1,EEF1D->chr8:144661867-144681711:-,eukaryotic_translation_elongation_factor_1_delta	SKNEP1_BONE	1	1	0.064	TRUE	1	10	0	18	0	TRUE	ACH-001192
SKNEP1_BONE	EIF2S1--CTD-2014B16.3	3	3	EIF2S1	6072	chr14:67843307:+	CTD-2014B16.3	19145	chr14:66424573:-	ONLY_REF_SPLICE	YES	252	0	0.02	1	0.048	0.048	EIF2S1->chr14:67826714-67853233:+,eukaryotic_translation_initiation_factor_2_subunit_alpha,CTD-2014B16.3->chr14:66424015-66471241:-	SKNEP1_BONE	0.02	1	0.096	TRUE	0	0	0	1	0	FALSE	ACH-001192
SKNEP1_BONE	C17orf76-AS1--FCGRT	2	0	C17orf76-AS1	1593	chr17:16342728:+	FCGRT	21378	chr19:50027764:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	C17orf76-AS1->chr17:16342136-16381992:+,FCGRT->Fc_fragment_of_IgG_receptor_and_transporter,chr19:50010073-50029590:+	SKNEP1_BONE	1	1	0.032	TRUE	0	0	0	3	0	TRUE	ACH-001192
SKNEP1_BONE	RP11-191L9.4--RP13-455A7.1	2	0	RP11-191L9.4	2387	chr22:48031102:+	RP13-455A7.1	13996	chr22:48257741:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	NEIGHBORS[5071],RP11-191L9.4->chr22:48027423-48251349:+,RP13-455A7.1->chr22:48256420-48257811:+	SKNEP1_BONE	1	1	0.032	FALSE	0	0	0	1	0	FALSE	ACH-001192
SKNEP1_BONE	SLCO4A1--WHSC1	2	0	SLCO4A1	1109	chr20:61273905:+	WHSC1	24296	chr4:1902353:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	SLCO4A1->chr20:61273797-61317137:+,solute_carrier_organic_anion_transporter_family_member_4A1,WHSC1->Oncogene{Bushman},Wolf-Hirschhorn_syndrome_candidate_1,chr4:1873151-1983934:+	SKNEP1_BONE	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-001192
SKNEP1_BONE	TCF3--DAZAP1	2	0	TCF3	4502	chr19:1646354:-	DAZAP1	26339	chr19:1417499:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	TCF3->Oncogene{Bushman},chr19:1609291-1652604:-,transcription_factor_3,DAZAP1->DAZ_associated_protein_1,chr19:1407568-1435719:+	SKNEP1_BONE	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-001192
SKNEP1_BONE	UBAP2L--ADAR	2	0	UBAP2L	1797	chr1:154193451:+	ADAR	35962	chr1:154575102:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.032	0	UBAP2L->chr1:154192655-154243986:+,ubiquitin_associated_protein_2_like,ADAR->adenosine_deaminase,_RNA-specific,chr1:154554538-154600475:-	SKNEP1_BONE	1	1	0.032	TRUE	0	0	0	1	0	TRUE	ACH-001192
SKNEP1_BONE	RP11-108K3.1--GLDN	1	3	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.016	0.048	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	SKNEP1_BONE	0.67	1	0.064	FALSE	0	30	1	55	0	FALSE	ACH-001192
SKNEP1_BONE	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	YES	3702	115	0	0.03	0.016	0.032	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	SKNEP1_BONE	0	0.03	0.048	FALSE	6	50	7	115	0	FALSE	ACH-001192
SKNEP1_BONE	YWHAE--GNAS	1	2	YWHAE	1332	chr17:1303341:-	GNAS	30056	chr20:57470667:+	ONLY_REF_SPLICE	YES	3702	811	0	0	0.016	0.032	GTEx_v2:{count=2;pct=0.02%;dist=Whole_Blood=1,Colon_-_Transverse=1},YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	SKNEP1_BONE	0	0	0.048	FALSE	0	6	0	6	1	FALSE	ACH-001192
SKNEP1_BONE	C17orf76-AS1--ZBTB7A	1	1	C17orf76-AS1	1593	chr17:16342728:+	ZBTB7A	15719	chr19:4055245:-	ONLY_REF_SPLICE	YES	250	0	0.01	1	0.016	0.016	C17orf76-AS1->chr17:16342136-16381992:+,ZBTB7A->chr19:4044362-4066943:-,zinc_finger_and_BTB_domain_containing_7A	SKNEP1_BONE	0.01	1	0.032	FALSE	0	0	0	1	0	FALSE	ACH-001192
SKNEP1_BONE	HP1BP3--EIF4G3	1	1	HP1BP3	1129	chr1:21113688:-	EIF4G3	27379	chr1:21437876:-	ONLY_REF_SPLICE	YES	59	13	0.03	0.13	0.016	0.016	LOCAL_REARRANGEMENT:-:[19147],HP1BP3->chr1:21069154-21113816:-,heterochromatin_protein_1_binding_protein_3,EIF4G3->chr1:21132963-21503377:-,eukaryotic_translation_initiation_factor_4_gamma_3	SKNEP1_BONE	0.03	0.13	0.032	TRUE	0	0	0	1	0	FALSE	ACH-001192
SKNEP1_BONE	METAP2--NQO2	1	1	METAP2	10514	chr12:95889874:+	NQO2	32994	chr6:3017118:+	ONLY_REF_SPLICE	YES	444	61	0	0.03	0.016	0.016	METAP2->Oncogene{Bushman},chr12:95867296-95909615:+,methionyl_aminopeptidase_2,NQO2->NAD(P)H_quinone_dehydrogenase_2,chr6:2988221-3019996:+	SKNEP1_BONE	0	0.03	0.032	FALSE	0	0	0	1	0	FALSE	ACH-001192
SKNEP1_BONE	PPP1CC--EZH2	1	1	PPP1CC	10582	chr12:111159940:-	EZH2	27787	chr7:148515209:-	ONLY_REF_SPLICE	YES	825	973	0	0	0.016	0.016	PPP1CC->Oncogene{Bushman},chr12:111157485-111180744:-,protein_phosphatase_1_catalytic_subunit_gamma,EZH2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr7:148504475-148581413:-,enhancer_of_zeste_2_polycomb_repressive_complex_2_subunit	SKNEP1_BONE	0	0	0.032	FALSE	0	0	0	1	0	FALSE	ACH-001192
SKNEP1_BONE	SLC38A9--SKIV2L2	1	1	SLC38A9	7186	chr5:54993674:-	SKIV2L2	35157	chr5:54618155:+	ONLY_REF_SPLICE	YES	61	273	0.03	0.01	0.016	0.016	GTEx_v2:{count=1;pct=0.01%;dist=Vagina=1},SLC38A9->chr5:54921673-55069022:-,solute_carrier_family_38_member_9,SKIV2L2->Ski2_like_RNA_helicase_2,chr5:54603588-54721409:+	SKNEP1_BONE	0.01	0.03	0.032	FALSE	0	0	0	1	0	FALSE	ACH-001192
SKNEP1_BONE	TROVE2--ASPM	1	1	TROVE2	1355	chr1:193028906:+	ASPM	36654	chr1:197074315:-	ONLY_REF_SPLICE	NO	119	153	0.02	0.01	0.016	0.016	TROVE2->TROVE_domain_family_member_2,chr1:193028552-193060907:+,ASPM->Oncogene{Bushman},abnormal_spindle_microtubule_assembly,chr1:197053258-197115824:-	SKNEP1_BONE	0.01	0.02	0.032	FALSE	0	0	0	1	0	FALSE	ACH-001192
SKNEP1_BONE	UBL5--CLCN7	1	1	UBL5	1498	chr19:9939065:+	CLCN7	14730	chr16:1509188:-	ONLY_REF_SPLICE	YES	516	102	0	0.02	0.016	0.016	UBL5->chr19:9938568-9940791:+,ubiquitin_like_5,CLCN7->chloride_voltage-gated_channel_7,chr16:1494935-1525581:-	SKNEP1_BONE	0	0.02	0.032	FALSE	0	0	0	1	0	FALSE	ACH-001192
LK2_LUNG	TIMM23B--LINC00843	63	32	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9474	0.4812	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LK2_LUNG	1	1	1.4286	TRUE	508	994	45	981	0	FALSE	ACH-000769
LK2_LUNG	TIMM23--RP11-464F9.1	36	7	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	176	4	0.2	0.91	0.5414	0.1053	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	LK2_LUNG	0.2	0.91	0.6467	TRUE	519	3926	326	965	0	FALSE	ACH-000769
LK2_LUNG	MT-TA--MT-TC	33	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4963	0.0602	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LK2_LUNG	1	1	0.5565	FALSE	462	80	0	856	0	FALSE	ACH-000769
LK2_LUNG	MT-ND4--MT-ND4L	3	43	MT-ND4	1170	chrM:10929:+	MT-ND4L	5514	chrM:10605:+	INCL_NON_REF_SPLICE	YES	19	4	0.71	0.92	0.0451	0.6466	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LK2_LUNG	0.71	0.92	0.6917	FALSE	344	826	44	306	0	FALSE	ACH-000769
LK2_LUNG	MT-ND4--MT-ND4L	5	30	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	3	3	0.92	0.92	0.0752	0.4511	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LK2_LUNG	0.92	0.92	0.5263	FALSE	344	821	44	306	0	FALSE	ACH-000769
LK2_LUNG	MT-CO3--MT-ATP6	8	13	MT-CO3	1138	chrM:9344:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	4	9	0.84	0.7	0.1203	0.1955	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LK2_LUNG	0.7	0.84	0.3158	FALSE	189	492	56	216	0	FALSE	ACH-000769
LK2_LUNG	IMMT--SPOCK2	9	3	IMMT	8334	chr2:86393631:-	SPOCK2	32483	chr10:73822663:-	ONLY_REF_SPLICE	YES	292	2	0.04	0.86	0.1353	0.0451	IMMT->chr2:86371055-86422893:-,inner_membrane_mitochondrial_protein,SPOCK2->chr10:73818793-73848790:-,sparc/osteonectin,_cwcv_and_kazal-like_domains_proteoglycan_(testican)_2	LK2_LUNG	0.04	0.86	0.1804	TRUE	0	0	0	1	0	TRUE	ACH-000769
LK2_LUNG	MT-ND4--MT-ND4L	3	27	MT-ND4	1170	chrM:10929:+	MT-ND4L	5621	chrM:10712:+	INCL_NON_REF_SPLICE	YES	19	2	0.61	0.94	0.0451	0.406	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LK2_LUNG	0.61	0.94	0.4511	FALSE	344	826	44	306	0	FALSE	ACH-000769
LK2_LUNG	MT-TA--MT-TC	8	4	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1203	0.0602	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LK2_LUNG	1	1	0.1805	FALSE	462	80	0	856	0	FALSE	ACH-000769
LK2_LUNG	MT-CO3--MT-ATP6	4	17	MT-CO3	1502	chrM:9708:+	MT-ATP6	4846	chrM:8588:+	INCL_NON_REF_SPLICE	YES	4	0	0.84	1	0.0602	0.2556	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LK2_LUNG	0.84	1	0.3158	FALSE	189	492	56	216	0	FALSE	ACH-000769
LK2_LUNG	MT-ND4--MT-ND4L	3	19	MT-ND4	1756	chrM:11515:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	4945	2	0	0.92	0.0451	0.2857	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LK2_LUNG	0	0.92	0.3308	FALSE	344	827	44	306	0	FALSE	ACH-000769
LK2_LUNG	MT-CO3--MT-ATP6	4	13	MT-CO3	1205	chrM:9411:+	MT-ATP6	5313	chrM:9055:+	INCL_NON_REF_SPLICE	YES	6	8	0.74	0.68	0.0602	0.1955	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LK2_LUNG	0.68	0.74	0.2557	FALSE	189	492	56	216	0	FALSE	ACH-000769
LK2_LUNG	MT-ATP6--MT-CO1	6	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	7165	18299	0	0	0.0902	0.015	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LK2_LUNG	0	0	0.1052	FALSE	183	104	9	328	0	FALSE	ACH-000769
LK2_LUNG	MT-CO3--MT-ATP6	3	13	MT-CO3	1107	chrM:9313:+	MT-ATP6	5176	chrM:8918:+	INCL_NON_REF_SPLICE	YES	2	34	0.89	0.32	0.0451	0.1955	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LK2_LUNG	0.32	0.89	0.2406	FALSE	189	492	56	216	0	FALSE	ACH-000769
LK2_LUNG	MT-TA--MT-TC	6	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0902	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	LK2_LUNG	1	1	0.0902	FALSE	462	80	0	856	0	FALSE	ACH-000769
LK2_LUNG	RPL13--MT-ATP8	6	0	RPL13	3295	chr16:89629359:+	MT-ATP8	7906	chrM:8385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0902	0	RPL13->chr16:89627065-89630950:+,ribosomal_protein_L13,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	LK2_LUNG	1	1	0.0902	FALSE	0	11	1	1	0	FALSE	ACH-000769
LK2_LUNG	MT-ATP6--MT-CO1	5	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	7011	17935	0	0	0.0752	0.015	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	LK2_LUNG	0	0	0.0902	FALSE	183	104	9	328	0	FALSE	ACH-000769
LK2_LUNG	RP11-123O10.4--GRIP1	5	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0752	0.015	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	LK2_LUNG	1	1	0.0902	FALSE	416	2512	207	587	0	FALSE	ACH-000769
LK2_LUNG	MT-CO3--MT-ATP6	3	5	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	NO	2	2	0.8	0.8	0.0451	0.0752	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LK2_LUNG	0.8	0.8	0.1203	FALSE	189	492	56	216	0	FALSE	ACH-000769
LK2_LUNG	MT-ND4--MT-ND4L	3	5	MT-ND4	1209	chrM:10968:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	22	1	0.27	0.89	0.0451	0.0752	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LK2_LUNG	0.27	0.89	0.1203	FALSE	344	826	44	306	0	FALSE	ACH-000769
LK2_LUNG	SLC1A5--MT-ND4L	4	1	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	777	0	0.01	1	0.0602	0.015	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LK2_LUNG	0.01	1	0.0752	FALSE	0	0	0	189	0	FALSE	ACH-000769
LK2_LUNG	MT-CO3--MT-ATP6	3	4	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	0	0.78	1	0.0451	0.0602	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LK2_LUNG	0.78	1	0.1053	FALSE	189	492	56	216	0	FALSE	ACH-000769
LK2_LUNG	ALDH3A1--MT-ND4	3	3	ALDH3A1	5842	chr17:19645873:-	MT-ND4	13533	chrM:10874:+	INCL_NON_REF_SPLICE	YES	6132	1365	0	0	0.0451	0.0451	ALDH3A1->aldehyde_dehydrogenase_3_family_member_A1,chr17:19641297-19652256:-,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	LK2_LUNG	0	0	0.0902	FALSE	0	0	0	2	0	FALSE	ACH-000769
LK2_LUNG	CTD-2008L17.1--RP11-456O19.2	3	2	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	1	0	0.83	1	0.0451	0.0301	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	LK2_LUNG	0.83	1	0.0752	FALSE	20	187	4	79	0	FALSE	ACH-000769
LK2_LUNG	MT-ND4--MT-ND4L	3	2	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	54	1	0.08	0.83	0.0451	0.0301	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LK2_LUNG	0.08	0.83	0.0752	FALSE	344	827	44	306	0	FALSE	ACH-000769
LK2_LUNG	SSR2--RAB25	3	2	SSR2	4941	chr1:155984752:-	RAB25	16569	chr1:156038061:+	ONLY_REF_SPLICE	YES	914	291	0.01	0.02	0.0451	0.0301	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:-:+:[40201],SSR2->chr1:155978839-155990750:-,signal_sequence_receptor,_beta_(translocon-associated_protein_beta),RAB25->RAB25,_member_RAS_oncogene_family,chr1:156030951-156040295:+	LK2_LUNG	0.01	0.02	0.0752	FALSE	0	0	0	1	0	FALSE	ACH-000769
LK2_LUNG	MT-ND4--MT-ND4L	3	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	2	1	0.67	0.0451	0.015	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LK2_LUNG	0.67	1	0.0601	FALSE	344	821	44	306	0	FALSE	ACH-000769
LK2_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LK2_LUNG	1	1	0.0451	FALSE	189	492	56	216	0	FALSE	ACH-000769
LK2_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	LK2_LUNG	1	1	0.0451	FALSE	189	492	56	216	0	FALSE	ACH-000769
LK2_LUNG	SLC1A5--MT-ND4L	3	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0451	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	LK2_LUNG	1	1	0.0451	FALSE	0	0	0	189	0	FALSE	ACH-000769
LK2_LUNG	RP11-96H19.1--RP11-446N19.1	2	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.75	1	0.0301	0.015	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LK2_LUNG	0.75	1	0.0451	FALSE	515	4851	409	746	0	FALSE	ACH-000769
LK2_LUNG	CA8--YTHDF3	2	0	CA8	3682	chr8:61178484:-	YTHDF3	27122	chr8:64122241:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	CA8->carbonic_anhydrase_8,chr8:61099906-61193971:-,YTHDF3->YTH_N6-methyladenosine_RNA_binding_protein_3,chr8:64081112-64125346:+	LK2_LUNG	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000769
LK2_LUNG	CTB-78F1.2--TENM2	2	0	CTB-78F1.2	1045	chr5:167148412:+	TENM2	14028	chr5:167379593:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	NEIGHBORS_OVERLAP:+:+:[7761],CTB-78F1.2->chr5:167148368-167156129:+,TENM2->chr5:166711804-167691162:+,teneurin_transmembrane_protein_2	LK2_LUNG	1	1	0.0301	FALSE	1	4	0	8	0	FALSE	ACH-000769
LK2_LUNG	CTD-2008L17.1--RP11-456O19.2	2	0	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	LK2_LUNG	1	1	0.0301	FALSE	33	240	4	98	0	FALSE	ACH-000769
LK2_LUNG	DDX39B--HNRNPA2B1	2	0	DDX39B	1499	chr6:31509727:-	HNRNPA2B1	18888	chr7:26237352:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	DDX39B->DEAD-box_helicase_39B,chr6:31497996-31510225:-,HNRNPA2B1->Oncogene{Bushman},chr7:26229547-26241149:-,heterogeneous_nuclear_ribonucleoprotein_A2/B1	LK2_LUNG	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000769
LK2_LUNG	FAM63B--EPHA6	2	0	FAM63B	7519	chr15:59114018:+	EPHA6	23883	chr3:96585669:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	FAM63B->chr15:59063391-59154099:+,family_with_sequence_similarity_63_member_B,EPHA6->EPH_receptor_A6,chr3:96533425-97471304:+	LK2_LUNG	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000769
LK2_LUNG	LINC00616--SLC7A11	2	0	LINC00616	8100	chr4:139012097:-	SLC7A11	25553	chr4:139104459:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	LOCAL_REARRANGEMENT:-:[33388],LINC00616->chr4:138948576-139051863:-,long_intergenic_non-protein_coding_RNA_616,SLC7A11->chr4:139085251-139163503:-,solute_carrier_family_7_member_11	LK2_LUNG	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000769
LK2_LUNG	PEAK1--EXOC4	2	0	PEAK1	2202	chr15:77657505:-	EXOC4	35970	chr7:132990631:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	PEAK1->chr15:77400471-77712486:-,pseudopodium_enriched_atypical_kinase_1,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	LK2_LUNG	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000769
LK2_LUNG	SMC4--RNH1	2	0	SMC4	1424	chr3:160117485:+	RNH1	30635	chr11:504996:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0301	0	SMC4->chr3:160117062-160152750:+,structural_maintenance_of_chromosomes_4,RNH1->chr11:494512-507300:-,ribonuclease/angiogenin_inhibitor_1	LK2_LUNG	1	1	0.0301	TRUE	0	0	0	1	0	TRUE	ACH-000769
LK2_LUNG	ERC2--FLNB	1	1	ERC2	1116	chr3:56502276:-	FLNB	37598	chr3:58062773:+	ONLY_REF_SPLICE	YES	10	29	0.17	0.06	0.015	0.015	ERC2->ELKS/RAB6-interacting/CAST_family_member_2,Oncogene{Bushman},chr3:55542336-56502391:-,FLNB->Oncogene{Bushman},chr3:57994127-58157982:+,filamin_B	LK2_LUNG	0.06	0.17	0.03	TRUE	0	0	0	1	0	TRUE	ACH-000769
LK2_LUNG	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.015	0.015	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	LK2_LUNG	1	1	0.03	FALSE	467	2173	244	435	0	FALSE	ACH-000769
LK2_LUNG	TIMM23B--LINC00843	1	1	TIMM23B	6950	chr10:51387763:+	LINC00843	11336	chr10:51740949:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.015	0.015	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	LK2_LUNG	1	1	0.03	TRUE	62	24	1	171	0	FALSE	ACH-000769
LK2_LUNG	TSPAN5--METAP1	1	1	TSPAN5	1484	chr4:99579297:-	METAP1	24467	chr4:99950018:+	ONLY_REF_SPLICE	YES	102	333	0.02	0.01	0.015	0.015	{Klijn_CCL:Breast=1,Colo-Rectal=1},TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,METAP1->chr4:99916771-99983964:+,methionyl_aminopeptidase_1	LK2_LUNG	0.01	0.02	0.03	FALSE	0	4	0	3	1	FALSE	ACH-000769
HLFA_FIBROBLAST	TIMM23B--LINC00843	81	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.99	0.9096	0.1797	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HLFA_FIBROBLAST	0.99	1	1.0893	TRUE	508	994	45	981	0	FALSE	ACH-000797
HLFA_FIBROBLAST	OR51S1--TP53I11	66	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.7412	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	HLFA_FIBROBLAST	1	1	0.7412	TRUE	402	216	10	229	0	FALSE	ACH-000797
HLFA_FIBROBLAST	TIMM23--RP11-464F9.1	45	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	213	1	0.18	0.98	0.5054	0.0112	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HLFA_FIBROBLAST	0.18	0.98	0.5166	TRUE	519	3926	326	965	0	FALSE	ACH-000797
HLFA_FIBROBLAST	COL1A1--COL6A2	32	0	COL1A1	5797	chr17:48273978:-	COL6A2	36137	chr21:47544799:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.3594	0	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HLFA_FIBROBLAST	1	1	0.3594	TRUE	0	0	0	6	0	TRUE	ACH-000797
HLFA_FIBROBLAST	RP11-680G10.1--GSE1	30	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.3369	0.0898	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HLFA_FIBROBLAST	0.97	1	0.4267	TRUE	458	1351	185	561	0	FALSE	ACH-000797
HLFA_FIBROBLAST	RP11-680G10.1--GSE1	24	8	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	1	1	0.97	0.2695	0.0898	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HLFA_FIBROBLAST	0.97	1	0.3593	TRUE	465	1949	224	605	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND6--MT-TE	23	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2583	0.0449	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HLFA_FIBROBLAST	1	1	0.3032	FALSE	499	1288	110	792	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND6--MT-TE	20	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2246	0.0449	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HLFA_FIBROBLAST	1	1	0.2695	FALSE	499	1288	110	792	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-TA--MT-TC	20	3	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2246	0.0337	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HLFA_FIBROBLAST	1	1	0.2583	FALSE	462	80	0	856	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND6--MT-TE	17	13	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.1909	0.146	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HLFA_FIBROBLAST	0.97	1	0.3369	FALSE	499	1288	110	792	0	FALSE	ACH-000797
HLFA_FIBROBLAST	PLXDC1--TAF13	18	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2021	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HLFA_FIBROBLAST	1	1	0.2021	TRUE	7	10	0	216	0	FALSE	ACH-000797
HLFA_FIBROBLAST	RP11-444D3.1--SOX5	15	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1685	0.0786	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HLFA_FIBROBLAST	1	1	0.2471	TRUE	477	1352	189	275	0	FALSE	ACH-000797
HLFA_FIBROBLAST	COL6A3--MT-RNR2	16	2	COL6A3	41635	chr2:238249354:-	MT-RNR2	57522	chrM:1699:+	INCL_NON_REF_SPLICE	YES	1810	0	0.01	1	0.1797	0.0225	COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HLFA_FIBROBLAST	0.01	1	0.2022	FALSE	0	0	0	6	0	FALSE	ACH-000797
HLFA_FIBROBLAST	COL1A1--NPM1	11	7	COL1A1	13015	chr17:48266760:-	NPM1	22863	chr5:170814857:+	INCL_NON_REF_SPLICE	YES	6840	1	0	0.95	0.1235	0.0786	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HLFA_FIBROBLAST	0	0.95	0.2021	TRUE	0	0	0	31	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND6--MT-TE	6	21	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0674	0.2358	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HLFA_FIBROBLAST	0.96	1	0.3032	FALSE	499	1288	110	792	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND4--MT-ATP8	11	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1235	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLFA_FIBROBLAST	1	1	0.1235	FALSE	230	193	14	283	0	FALSE	ACH-000797
HLFA_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	10	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1123	0.0225	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HLFA_FIBROBLAST	1	1	0.1348	FALSE	515	4851	409	746	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND4--MT-ATP8	10	0	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1123	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLFA_FIBROBLAST	1	1	0.1123	FALSE	231	205	14	283	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND6--MT-TE	3	20	MT-ND6	1196	chrM:14478:-	MT-TE	4556	chrM:14712:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.0337	0.2246	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HLFA_FIBROBLAST	0.96	1	0.2583	FALSE	499	1288	110	792	0	FALSE	ACH-000797
HLFA_FIBROBLAST	COL1A1--COL6A2	7	3	COL1A1	9774	chr17:48270001:-	COL6A2	29401	chr21:47537350:+	INCL_NON_REF_SPLICE	NO	6589	1183	0	0.01	0.0786	0.0337	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HLFA_FIBROBLAST	0	0.01	0.1123	FALSE	0	0	0	6	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-TA--MT-TC	7	3	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0786	0.0337	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HLFA_FIBROBLAST	1	1	0.1123	FALSE	462	80	0	856	0	FALSE	ACH-000797
HLFA_FIBROBLAST	HSP90AB1--MT-RNR2	7	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	1783	0	0	1	0.0786	0.0112	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HLFA_FIBROBLAST	0	1	0.0898	FALSE	13	9	0	364	0	FALSE	ACH-000797
HLFA_FIBROBLAST	PRR16--CTD-2334D19.1	7	1	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	95	0	0.08	1	0.0786	0.0112	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HLFA_FIBROBLAST	0.08	1	0.0898	FALSE	56	216	12	147	0	FALSE	ACH-000797
HLFA_FIBROBLAST	IGFBP4--S100A6	7	0	IGFBP4	3668	chr17:38610269:+	S100A6	9247	chr1:153508470:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0786	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HLFA_FIBROBLAST	1	1	0.0786	TRUE	0	0	0	4	0	TRUE	ACH-000797
HLFA_FIBROBLAST	NRIP1--AF127936.7	7	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0786	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HLFA_FIBROBLAST	1	1	0.0786	FALSE	292	1546	117	613	0	FALSE	ACH-000797
HLFA_FIBROBLAST	COL3A1--COL6A3	5	4	COL3A1	19727	chr2:189867744:+	COL6A3	56408	chr2:238267883:-	INCL_NON_REF_SPLICE	NO	1812	1727	0	0.01	0.0562	0.0449	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HLFA_FIBROBLAST	0	0.01	0.1011	FALSE	0	0	0	1	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND4--MT-ATP8	6	0	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0674	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLFA_FIBROBLAST	1	1	0.0674	FALSE	231	205	14	283	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND4--MT-ATP8	5	2	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	15297	686	0	0.01	0.0562	0.0225	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLFA_FIBROBLAST	0	0.01	0.0787	FALSE	231	217	16	283	0	FALSE	ACH-000797
HLFA_FIBROBLAST	HSP90AB1--MT-RNR2	5	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	1810	0	0	1	0.0562	0.0112	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	HLFA_FIBROBLAST	0	1	0.0674	FALSE	13	9	0	364	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0562	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HLFA_FIBROBLAST	1	1	0.0562	FALSE	462	80	0	856	0	FALSE	ACH-000797
HLFA_FIBROBLAST	COL1A1--NPM1	3	7	COL1A1	13029	chr17:48266746:-	NPM1	22878	chr5:170814872:+	INCL_NON_REF_SPLICE	YES	6999	3	0	0.77	0.0337	0.0786	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,NPM1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr5:170814120-170838141:+,nucleophosmin_(nucleolar_phosphoprotein_B23,_numatrin)	HLFA_FIBROBLAST	0	0.77	0.1123	TRUE	0	0	0	31	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND4--MT-ATP8	4	3	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	12274	41	0	0.15	0.0449	0.0337	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLFA_FIBROBLAST	0	0.15	0.0786	FALSE	231	217	16	283	0	FALSE	ACH-000797
HLFA_FIBROBLAST	PRR16--CTD-2334D19.1	4	2	PRR16	8644	chr5:120022405:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	62	0	0.09	1	0.0449	0.0225	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HLFA_FIBROBLAST	0.09	1	0.0674	FALSE	21	45	1	60	0	FALSE	ACH-000797
HLFA_FIBROBLAST	COL1A1--RAD23B	3	5	COL1A1	12372	chr17:48267403:-	RAD23B	27171	chr9:110068766:+	INCL_NON_REF_SPLICE	YES	7453	807	0	0.01	0.0337	0.0562	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,RAD23B->Oncogene{Bushman},RAD23_homolog_B,_nucleotide_excision_repair_protein,chr9:110045418-110094475:+	HLFA_FIBROBLAST	0	0.01	0.0899	FALSE	0	0	0	4	0	FALSE	ACH-000797
HLFA_FIBROBLAST	COL1A1--RAD23B	3	5	COL1A1	12987	chr17:48266788:-	RAD23B	27171	chr9:110068766:+	INCL_NON_REF_SPLICE	YES	6771	807	0	0.01	0.0337	0.0562	COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,RAD23B->Oncogene{Bushman},RAD23_homolog_B,_nucleotide_excision_repair_protein,chr9:110045418-110094475:+	HLFA_FIBROBLAST	0	0.01	0.0899	FALSE	0	0	0	4	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND4--MT-ATP8	3	5	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	12393	0	0	1	0.0337	0.0562	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLFA_FIBROBLAST	0	1	0.0899	FALSE	231	217	16	283	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1220	chrM:10979:+	MT-ATP8	5487	chrM:8474:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0449	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLFA_FIBROBLAST	1	1	0.0449	FALSE	231	204	14	283	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND4--MT-ATP8	4	0	MT-ND4	1250	chrM:11009:+	MT-ATP8	5482	chrM:8469:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0449	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLFA_FIBROBLAST	1	1	0.0449	FALSE	231	204	14	283	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND4--MT-ATP8	3	3	MT-ND4	1547	chrM:11306:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	15396	0	0	1	0.0337	0.0337	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLFA_FIBROBLAST	0	1	0.0674	FALSE	231	217	16	283	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND4--MT-ATP8	3	3	MT-ND4	1781	chrM:11540:+	MT-ATP8	5482	chrM:8469:+	INCL_NON_REF_SPLICE	YES	12452	24	0	0.2	0.0337	0.0337	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLFA_FIBROBLAST	0	0.2	0.0674	FALSE	231	217	16	283	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND4--MT-ATP8	3	3	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	12452	0	0	1	0.0337	0.0337	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLFA_FIBROBLAST	0	1	0.0674	FALSE	231	217	16	283	0	FALSE	ACH-000797
HLFA_FIBROBLAST	RP11-444D3.1--SOX5	2	7	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0.0786	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HLFA_FIBROBLAST	1	1	0.1011	TRUE	160	277	29	98	0	FALSE	ACH-000797
HLFA_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0337	0.0337	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HLFA_FIBROBLAST	0.86	1	0.0674	FALSE	467	2173	244	435	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND4--MT-ATP8	3	2	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	13995	0	0	1	0.0337	0.0225	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLFA_FIBROBLAST	0	1	0.0562	FALSE	231	217	16	283	0	FALSE	ACH-000797
HLFA_FIBROBLAST	PRR16--CTD-2334D19.1	3	2	PRR16	8781	chr5:120022542:+	CTD-2334D19.1	13556	chr5:120125649:+	INCL_NON_REF_SPLICE	YES	28	0	0.15	1	0.0337	0.0225	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	HLFA_FIBROBLAST	0.15	1	0.0562	FALSE	21	45	1	60	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND4--MT-ATP8	3	1	MT-ND4	1311	chrM:11070:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	13921	0	0	1	0.0337	0.0112	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLFA_FIBROBLAST	0	1	0.0449	FALSE	231	205	14	283	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MYL9--MT-CO3	3	1	MYL9	4577	chr20:35177723:+	MT-CO3	8119	chrM:9243:+	INCL_NON_REF_SPLICE	YES	548	0	0.01	1	0.0337	0.0112	MYL9->chr20:35169887-35178228:+,myosin_light_chain_9,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HLFA_FIBROBLAST	0.01	1	0.0449	FALSE	29	0	0	10	0	FALSE	ACH-000797
HLFA_FIBROBLAST	IGFBP4--S100A6	3	0	IGFBP4	3682	chr17:38610283:+	S100A6	9257	chr1:153508460:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},IGFBP4->chr17:38599702-38613983:+,insulin_like_growth_factor_binding_protein_4,S100A6->S100_calcium_binding_protein_A6,chr1:153507075-153508720:-	HLFA_FIBROBLAST	1	1	0.0337	TRUE	0	0	0	4	0	TRUE	ACH-000797
HLFA_FIBROBLAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLFA_FIBROBLAST	1	1	0.0337	FALSE	230	193	14	283	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLFA_FIBROBLAST	1	1	0.0337	FALSE	231	204	14	283	0	FALSE	ACH-000797
HLFA_FIBROBLAST	MT-ND4--MT-ATP8	3	0	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HLFA_FIBROBLAST	1	1	0.0337	FALSE	230	197	14	283	0	FALSE	ACH-000797
HLFA_FIBROBLAST	PASD1--PLEC	3	0	PASD1	13972	chrX:150840713:+	PLEC	47014	chr8:144999036:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	PASD1->PAS_domain_containing_1,chrX:150732094-150845211:+,PLEC->chr8:144989321-145050902:-,plectin	HLFA_FIBROBLAST	1	1	0.0337	TRUE	0	0	0	1	0	TRUE	ACH-000797
HLFA_FIBROBLAST	PLXDC1--TAF13	3	0	PLXDC1	27520	chr17:37222840:-	TAF13	38540	chr1:109605627:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	HLFA_FIBROBLAST	1	1	0.0337	TRUE	7	10	0	216	0	FALSE	ACH-000797
HLFA_FIBROBLAST	PRKCSH--LGALS1	3	0	PRKCSH	11051	chr19:11560150:+	LGALS1	15725	chr22:38071655:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0337	0	PRKCSH->chr19:11546109-11561783:+,protein_kinase_C_substrate_80K-H,LGALS1->chr22:38071615-38075813:+,lectin,_galactoside_binding_soluble_1	HLFA_FIBROBLAST	1	1	0.0337	TRUE	0	0	0	3	0	TRUE	ACH-000797
HLFA_FIBROBLAST	RP11-444D3.1--SOX5	2	4	RP11-444D3.1	8531	chr12:24430150:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0.0449	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	HLFA_FIBROBLAST	1	1	0.0674	TRUE	274	363	69	150	0	FALSE	ACH-000797
HLFA_FIBROBLAST	COL3A1--COL6A3	2	2	COL3A1	23161	chr2:189871178:+	COL6A3	62559	chr2:238261227:-	ONLY_REF_SPLICE	YES	2121	2396	0	0	0.0225	0.0225	GTEx&tcga_normals:2/3694=0.05%,GTEx:0.03%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=1},HGNC_GENEFAM,PROTCLUST,COL3A1->chr2:189839046-189877472:+,collagen_type_III_alpha_1,COL6A3->chr2:238232646-238323018:-,collagen_type_VI_alpha_3	HLFA_FIBROBLAST	0	0	0.045	FALSE	0	0	0	1	0	FALSE	ACH-000797
HLFA_FIBROBLAST	B2M--ANXA2	2	0	B2M	1137	chr15:45003811:+	ANXA2	26675	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=2;pct=0.02%;dist=Colon_-_Sigmoid=1,Colon_-_Transverse=1},B2M->Oncogene{Bushman},beta-2-microglobulin,chr15:45003675-45011075:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	HLFA_FIBROBLAST	1	1	0.0225	TRUE	1	1	1	1	0	TRUE	ACH-000797
HLFA_FIBROBLAST	COL1A2--LOXL2	2	0	COL1A2	20345	chr7:94047864:+	LOXL2	41246	chr8:23225947:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2,LOXL2->Oncogene{Bushman},chr8:23154702-23282841:-,lysyl_oxidase_like_2	HLFA_FIBROBLAST	1	1	0.0225	TRUE	0	0	0	1	0	TRUE	ACH-000797
HLFA_FIBROBLAST	NDC80--HIF1A	2	0	NDC80	4483	chr18:2577356:+	HIF1A	39781	chr14:62211423:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0225	0	GTEx_FI:{Breast=[count:1=pct:0.9],Lung=[count:1=pct:0.6]},GTEx_v2:{count=9;pct=0.10%;dist=Cells_-_Transformed_fibroblasts=4,Artery_-_Tibial=1,Breast_-_Mammary_Tissue=1,Lung=1,Artery_-_Coronary=1,Esophagus_-_Muscularis=1},NDC80->NDC80_kinetochore_complex_component,chr18:2571510-2616634:+,HIF1A->chr14:62162231-62214976:+,hypoxia_inducible_factor_1_alpha_subunit	HLFA_FIBROBLAST	1	1	0.0225	TRUE	2	27	1	8	0	FALSE	ACH-000797
HLFA_FIBROBLAST	COL1A1--COL6A2	1	2	COL1A1	8471	chr17:48271304:-	COL6A2	26771	chr21:47533922:+	ONLY_REF_SPLICE	YES	7057	1337	0	0	0.0112	0.0225	GTEx&tcga_normals:12/3694=0.32%,GTEx:0.16%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_Transformed_fibroblasts=3},HGNC_GENEFAM,PROTCLUST,COL1A1->Oncogene{Bushman},chr17:48260650-48278993:-,collagen_type_I_alpha_1,COL6A2->chr21:47518011-47552763:+,collagen_type_VI_alpha_2	HLFA_FIBROBLAST	0	0	0.0337	FALSE	0	2	0	1	0	FALSE	ACH-000797
HLFA_FIBROBLAST	RP11-96H19.1--RP11-446N19.1	1	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0112	0.0225	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HLFA_FIBROBLAST	1	1	0.0337	FALSE	407	2205	196	549	0	FALSE	ACH-000797
HLFA_FIBROBLAST	CTNNA1--MATR3	1	1	CTNNA1	17161	chr5:138163407:+	MATR3	58734	chr5:138650364:+	ONLY_REF_SPLICE	YES	793	164	0	0.01	0.0112	0.0112	GTEx&tcga_normals:1/3694=0.03%,CTNNA1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},catenin_alpha_1,chr5:137946656-138270723:+,MATR3->chr5:138609441-138667360:+,matrin_3	HLFA_FIBROBLAST	0	0.01	0.0224	FALSE	0	0	0	6	0	FALSE	ACH-000797
HLFA_FIBROBLAST	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.17	1	0.0112	0.0112	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HLFA_FIBROBLAST	0.17	1	0.0224	FALSE	164	806	69	479	0	FALSE	ACH-000797
HLFA_FIBROBLAST	PDHX--CD44	1	1	PDHX	1987	chr11:34938362:+	CD44	37425	chr11:35236399:+	ONLY_REF_SPLICE	YES	130	2698	0.02	0	0.0112	0.0112	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	HLFA_FIBROBLAST	0	0.02	0.0224	FALSE	0	1	0	9	0	FALSE	ACH-000797
HLFA_FIBROBLAST	PDHX--CD44	1	1	PDHX	10190	chr11:34999729:+	CD44	31086	chr11:35226059:+	ONLY_REF_SPLICE	YES	83	2920	0.02	0	0.0112	0.0112	GTEx&tcga_normals:1/3694=0.03%,PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CD44->CD44_molecule_(Indian_blood_group),Oncogene{Bushman},chr11:35160417-35253949:+	HLFA_FIBROBLAST	0	0.02	0.0224	FALSE	0	0	0	1	0	FALSE	ACH-000797
SW579_THYROID	TIMM23B--LINC00843	102	34	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2035	0.4012	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	SW579_THYROID	1	1	1.6047	TRUE	508	994	45	981	0	FALSE	ACH-000163
SW579_THYROID	VPS53--GLOD4	57	25	VPS53	3923	chr17:613773:-	GLOD4	56987	chr17:681984:-	ONLY_REF_SPLICE	YES	84	126	0.49	0.39	0.6725	0.295	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[35380],VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,GLOD4->chr17:660337-685581:-,glyoxalase_domain_containing_4	SW579_THYROID	0.39	0.49	0.9675	TRUE	0	2	0	1	1	TRUE	ACH-000163
SW579_THYROID	TIMM23--RP11-464F9.1	59	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	176	6	0.26	0.91	0.6961	0.0472	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	SW579_THYROID	0.26	0.91	0.7433	TRUE	519	3926	326	965	0	FALSE	ACH-000163
SW579_THYROID	RP11-680G10.1--GSE1	41	13	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	28	1	0.66	0.4837	0.1534	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW579_THYROID	0.66	1	0.6371	TRUE	465	1949	224	605	0	FALSE	ACH-000163
SW579_THYROID	RP11-680G10.1--GSE1	38	19	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.4483	0.2242	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	SW579_THYROID	1	1	0.6725	TRUE	458	1351	185	561	0	FALSE	ACH-000163
SW579_THYROID	KANSL1--ARL17B	31	4	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	20	15	0.64	0.7	0.3658	0.0472	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	SW579_THYROID	0.64	0.7	0.413	TRUE	181	1564	124	196	0	FALSE	ACH-000163
SW579_THYROID	MT-ND4--MT-ND4L	8	71	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	6	0	0.93	1	0.0944	0.8377	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW579_THYROID	0.93	1	0.9321	FALSE	344	821	44	306	0	FALSE	ACH-000163
SW579_THYROID	C15orf57--CBX3	21	11	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	26	38	0.55	0.46	0.2478	0.1298	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SW579_THYROID	0.46	0.55	0.3776	TRUE	267	562	48	632	0	FALSE	ACH-000163
SW579_THYROID	MT-ND6--MT-TE	21	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.2478	0.0354	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW579_THYROID	0.96	1	0.2832	FALSE	499	1288	110	792	0	FALSE	ACH-000163
SW579_THYROID	MT-TA--MT-TC	21	0	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2478	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW579_THYROID	1	1	0.2478	FALSE	462	80	0	856	0	FALSE	ACH-000163
SW579_THYROID	SKIV2L2--FAM159B	19	2	SKIV2L2	17595	chr5:54654526:+	FAM159B	39997	chr5:64013716:+	ONLY_REF_SPLICE	YES	88	0	0.19	1	0.2242	0.0236	SKIV2L2->Ski2_like_RNA_helicase_2,chr5:54603588-54721409:+,FAM159B->chr5:63986135-64013917:+,family_with_sequence_similarity_159_member_B	SW579_THYROID	0.19	1	0.2478	TRUE	0	0	0	1	0	TRUE	ACH-000163
SW579_THYROID	MT-ND6--MT-TE	14	3	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1652	0.0354	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW579_THYROID	0.94	1	0.2006	FALSE	499	1288	110	792	0	FALSE	ACH-000163
SW579_THYROID	FTH1--ACTB	14	2	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	3914	4	0	0.8	0.1652	0.0236	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SW579_THYROID	0	0.8	0.1888	TRUE	1	0	0	97	0	FALSE	ACH-000163
SW579_THYROID	RP4-565E6.1--HYDIN	10	4	RP4-565E6.1	15873	chr1:146126404:-	HYDIN	29278	chr16:71196633:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.118	0.0472	GTEx_FI:{Brain=[count:448=pct:68.0],Esophagus=[count:175=pct:43.2],Blood_Vessel=[count:165=pct:44.7],Thyroid=[count:121=pct:68.4],Nerve=[count:86=pct:50.6],Colon=[count:79=pct:41.4],Heart=[count:74=pct:29.5],Testis=[count:63=pct:60.0],Adipose_Tissue=[count:59=pct:19.8],Lung=[count:58=pct:34.7],Pituitary=[count:48=pct:92.3],Breast=[count:46=pct:41.4],Uterus=[count:37=pct:86.0],Ovary=[count:33=pct:62.3],Skin=[count:33=pct:10.5],Pancreas=[count:31=pct:17.1],Adrenal_Gland=[count:29=pct:34.1],Prostate=[count:23=pct:37.7],Small_Intestine=[count:21=pct:38.2],Vagina=[count:18=pct:32.7],Stomach=[count:16=pct:18.0],Spleen=[count:8=pct:7.1],Salivary_Gland=[count:8=pct:20.5],Muscle=[count:6=pct:2.6],Kidney=[count:5=pct:35.7],Bladder=[count:5=pct:55.6],Cervix_Uteri=[count:4=pct:50.0],Fallopian_Tube=[count:3=pct:50.0],Blood=[count:1=pct:0.6],Liver=[count:1=pct:0.8]},RP4-565E6.1->chr1:146093234-146159103:-,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	SW579_THYROID	1	1	0.1652	TRUE	456	1387	91	133	0	FALSE	ACH-000163
SW579_THYROID	FTH1--ACTB	10	3	FTH1	1252	chr11:61734881:-	ACTB	11611	chr7:5570212:-	INCL_NON_REF_SPLICE	YES	3968	3	0	0.81	0.118	0.0354	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SW579_THYROID	0	0.81	0.1534	TRUE	1	0	0	97	0	FALSE	ACH-000163
SW579_THYROID	SLC1A5--MT-ND4L	10	2	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	936	0	0.01	1	0.118	0.0236	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW579_THYROID	0.01	1	0.1416	FALSE	0	0	0	189	0	FALSE	ACH-000163
SW579_THYROID	C15orf57--CBX3	8	9	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	26	39	0.4	0.3	0.0944	0.1062	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	SW579_THYROID	0.3	0.4	0.2006	TRUE	267	562	48	632	0	FALSE	ACH-000163
SW579_THYROID	MT-ND6--MT-TE	7	11	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0826	0.1298	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW579_THYROID	0.95	1	0.2124	FALSE	499	1288	110	792	0	FALSE	ACH-000163
SW579_THYROID	MT-ND6--MT-TE	5	18	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.059	0.2124	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW579_THYROID	0.96	1	0.2714	FALSE	499	1288	110	792	0	FALSE	ACH-000163
SW579_THYROID	MT-ND6--MT-TE	6	12	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.0708	0.1416	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW579_THYROID	0.95	1	0.2124	FALSE	499	1288	110	792	0	FALSE	ACH-000163
SW579_THYROID	VPS53--GLOD4	1	25	VPS53	3923	chr17:613773:-	GLOD4	55800	chr17:683978:-	ONLY_REF_SPLICE	NO	84	144	0.24	0.15	0.0118	0.295	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[35380],VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,GLOD4->chr17:660337-685581:-,glyoxalase_domain_containing_4	SW579_THYROID	0.15	0.24	0.3068	TRUE	0	0	0	1	0	TRUE	ACH-000163
SW579_THYROID	AP000525.9--LA16c-60G3.6	6	0	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0708	0	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	SW579_THYROID	1	1	0.0708	TRUE	0	42	0	133	42	FALSE	ACH-000163
SW579_THYROID	MMP2--ALDOA	6	0	MMP2	19685	chr16:55539559:+	ALDOA	31887	chr16:30078930:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0708	0	MMP2->Oncogene{Bushman},chr16:55423612-55540603:+,matrix_metallopeptidase_2,ALDOA->aldolase,_fructose-bisphosphate_A,chr16:30064411-30081778:+	SW579_THYROID	1	1	0.0708	TRUE	0	0	0	1	0	TRUE	ACH-000163
SW579_THYROID	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0708	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW579_THYROID	1	1	0.0708	FALSE	499	1288	110	792	0	FALSE	ACH-000163
SW579_THYROID	PRR16--CTD-2334D19.1	5	2	PRR16	1368	chr5:119800340:+	CTD-2334D19.1	13556	chr5:120125649:+	ONLY_REF_SPLICE	YES	44	0	0.14	1	0.059	0.0236	NEIGHBORS[93886],PRR16->chr5:119799973-120023027:+,proline_rich_16,CTD-2334D19.1->chr5:120116913-120126473:+	SW579_THYROID	0.14	1	0.0826	FALSE	56	216	12	147	0	FALSE	ACH-000163
SW579_THYROID	VPS53--GLOD4	1	18	VPS53	3923	chr17:613773:-	GLOD4	58743	chr17:680228:-	ONLY_REF_SPLICE	NO	84	209	0.18	0.08	0.0118	0.2124	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[35380],VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,GLOD4->chr17:660337-685581:-,glyoxalase_domain_containing_4	SW579_THYROID	0.08	0.18	0.2242	TRUE	0	0	0	1	0	TRUE	ACH-000163
SW579_THYROID	RP11-123O10.4--GRIP1	5	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.059	0.0118	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	SW579_THYROID	1	1	0.0708	FALSE	416	2512	207	587	0	FALSE	ACH-000163
SW579_THYROID	MT-ATP6--MT-CO1	5	0	MT-ATP6	1134	chrM:8660:+	MT-CO1	5163	chrM:6385:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.059	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW579_THYROID	1	1	0.059	FALSE	183	104	9	328	0	FALSE	ACH-000163
SW579_THYROID	MT-ND6--COL1A2	5	0	MT-ND6	1313	chrM:14361:-	COL1A2	30434	chr7:94054428:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.059	0	MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,COL1A2->Oncogene{Bushman},chr7:94023873-94060544:+,collagen_type_I_alpha_2	SW579_THYROID	1	1	0.059	FALSE	0	1	0	7	0	FALSE	ACH-000163
SW579_THYROID	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.059	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW579_THYROID	1	1	0.059	FALSE	292	1546	117	613	0	FALSE	ACH-000163
SW579_THYROID	RP11-634B7.4--TRIM58	4	4	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	18	1	0.31	0.0472	0.0472	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	SW579_THYROID	0.31	1	0.0944	TRUE	158	633	76	73	0	FALSE	ACH-000163
SW579_THYROID	VIM-AS1--FSCN1	3	7	VIM-AS1	1555	chr10:17271430:-	FSCN1	9803	chr7:5632447:+	INCL_NON_REF_SPLICE	YES	7866	0	0	1	0.0354	0.0826	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,FSCN1->Oncogene{Bushman},chr7:5632439-5646286:+,fascin_actin-bundling_protein_1	SW579_THYROID	0	1	0.118	TRUE	0	0	0	3	0	FALSE	ACH-000163
SW579_THYROID	FTH1--ACTB	4	2	FTH1	1209	chr11:61734924:-	ACTB	11600	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	3655	4	0	0.6	0.0472	0.0236	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SW579_THYROID	0	0.6	0.0708	FALSE	1	0	0	97	0	FALSE	ACH-000163
SW579_THYROID	VIM--ACTB	4	2	VIM	2195	chr10:17271452:+	ACTB	15620	chr7:5570232:-	INCL_NON_REF_SPLICE	YES	9673	4	0	0.6	0.0472	0.0236	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SW579_THYROID	0	0.6	0.0708	FALSE	0	0	0	9	0	FALSE	ACH-000163
SW579_THYROID	MT-ATP6--MT-CO1	4	1	MT-ATP6	1200	chrM:8726:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	NO	9351	14442	0	0	0.0472	0.0118	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW579_THYROID	0	0	0.059	FALSE	183	104	9	328	0	FALSE	ACH-000163
SW579_THYROID	CHD8--HNRNPC	4	0	CHD8	1095	chr14:21924191:-	HNRNPC	47891	chr14:21681276:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0472	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	SW579_THYROID	1	1	0.0472	TRUE	1	3	0	10	0	TRUE	ACH-000163
SW579_THYROID	MT-ND4--MT-ND4L	4	0	MT-ND4	1018	chrM:10777:+	MT-ND4L	5623	chrM:10714:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0472	0	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW579_THYROID	1	1	0.0472	FALSE	344	821	44	306	0	FALSE	ACH-000163
SW579_THYROID	VPS53--GLOD4	1	11	VPS53	2361	chr17:617863:-	GLOD4	56987	chr17:681984:-	ONLY_REF_SPLICE	YES	23	126	0.34	0.09	0.0118	0.1298	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[35380],VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,GLOD4->chr17:660337-685581:-,glyoxalase_domain_containing_4	SW579_THYROID	0.09	0.34	0.1416	TRUE	0	0	0	1	0	TRUE	ACH-000163
SW579_THYROID	FTH1--ACTB	3	2	FTH1	1230	chr11:61734903:-	ACTB	11592	chr7:5570231:-	INCL_NON_REF_SPLICE	YES	3923	4	0	0.56	0.0354	0.0236	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SW579_THYROID	0	0.56	0.059	FALSE	1	0	0	97	0	FALSE	ACH-000163
SW579_THYROID	CDH13--RP11-22H5.2	3	1	CDH13	1335	chr16:82660742:+	RP11-22H5.2	41963	chr16:82862870:+	ONLY_REF_SPLICE	YES	136	0	0.03	1	0.0354	0.0118	NEIGHBORS_OVERLAP:+:+:[56319],CDH13->Oncogene{Bushman},cadherin_13,chr16:82660408-83830204:+,RP11-22H5.2->chr16:82806924-82863243:+	SW579_THYROID	0.03	1	0.0472	FALSE	14	31	0	36	0	FALSE	ACH-000163
SW579_THYROID	MT-ND4--MT-ND4L	3	1	MT-ND4	1003	chrM:10762:+	MT-ND4L	5568	chrM:10659:+	INCL_NON_REF_SPLICE	YES	0	1	1	0.8	0.0354	0.0118	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	SW579_THYROID	0.8	1	0.0472	FALSE	344	821	44	306	0	FALSE	ACH-000163
SW579_THYROID	COL6A1--FN1	3	0	COL6A1	4372	chr21:47406583:+	FN1	62132	chr2:216240079:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_Transformed_fibroblasts=1},COL6A1->chr21:47401651-47424964:+,collagen_type_VI_alpha_1,FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1	SW579_THYROID	1	1	0.0354	TRUE	0	0	0	1	0	TRUE	ACH-000163
SW579_THYROID	MT-ATP6--MT-CO1	3	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	SW579_THYROID	1	1	0.0354	FALSE	183	104	9	328	0	FALSE	ACH-000163
SW579_THYROID	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	SW579_THYROID	1	1	0.0354	FALSE	499	1288	110	792	0	FALSE	ACH-000163
SW579_THYROID	MT-TA--MT-TC	3	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	SW579_THYROID	1	1	0.0354	FALSE	462	80	0	856	0	FALSE	ACH-000163
SW579_THYROID	RP11-120D5.1--MID1	3	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0354	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SW579_THYROID	1	1	0.0354	FALSE	16	356	14	466	0	FALSE	ACH-000163
SW579_THYROID	VIM--ACTB	3	0	VIM	2136	chr10:17271393:+	ACTB	15629	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SW579_THYROID	1	1	0.0354	TRUE	0	0	0	9	0	TRUE	ACH-000163
SW579_THYROID	VIM--ACTB	3	0	VIM	2127	chr10:17271384:+	ACTB	15629	chr7:5570223:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0354	0	GTEx&tcga_normals:43/3694=1.16%,GTEx:0.30%,VIM->chr10:17270258-17279592:+,vimentin,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	SW579_THYROID	1	1	0.0354	TRUE	0	0	0	9	0	TRUE	ACH-000163
SW579_THYROID	ATP6V1C1--AZIN1	2	1	ATP6V1C1	1163	chr8:104033453:+	AZIN1	27336	chr8:103870378:-	ONLY_REF_SPLICE	YES	122	199	0.02	0.01	0.0236	0.0118	GTEx&tcga_normals:1/3694=0.03%,ATP6V1C1->ATPase_H+_transporting_V1_subunit_C1,chr8:104033291-104085279:+,AZIN1->antizyme_inhibitor_1,chr8:103838585-103906092:-	SW579_THYROID	0.01	0.02	0.0354	FALSE	0	1	0	3	0	FALSE	ACH-000163
SW579_THYROID	CTD-2152M20.2--GOLPH3	2	1	CTD-2152M20.2	2826	chr5:32106230:-	GOLPH3	8940	chr5:32143986:-	ONLY_REF_SPLICE	YES	0	32	1	0.09	0.0236	0.0118	GTEx_FI:{Colon=[count:5=pct:2.6],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:4=pct:1.3],Brain=[count:4=pct:0.6],Small_Intestine=[count:2=pct:3.6],Skin=[count:2=pct:0.6],Nerve=[count:2=pct:1.2],Breast=[count:1=pct:0.9],Thyroid=[count:1=pct:0.6],Liver=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Pancreas=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Blood_Vessel=[count:1=pct:0.3]},LOCAL_REARRANGEMENT:-:[2763],CTD-2152M20.2->chr5:32103551-32122047:-,GOLPH3->chr5:32124810-32174456:-,golgi_phosphoprotein_3	SW579_THYROID	0.09	1	0.0354	TRUE	10	26	2	24	0	FALSE	ACH-000163
SW579_THYROID	DCUN1D2--TMCO3	2	0	DCUN1D2	1286	chr13:114144982:-	TMCO3	30054	chr13:114201615:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx_v2:{count=3;pct=0.03%;dist=Minor_Salivary_Gland=1,Muscle_-_Skeletal=1,Whole_Blood=1},LOCAL_INVERSION:-:+:[43],DCUN1D2->chr13:114110134-114145267:-,defective_in_cullin_neddylation_1_domain_containing_2,TMCO3->chr13:114145310-114204542:+,transmembrane_and_coiled-coil_domains_3	SW579_THYROID	1	1	0.0236	TRUE	0	3	0	3	3	TRUE	ACH-000163
SW579_THYROID	ELK3--AKAP9	2	0	ELK3	5794	chr12:96617551:+	AKAP9	46178	chr7:91690574:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	ELK3->ELK3,_ETS_transcription_factor,Oncogene{Bushman},chr12:96588160-96663613:+,AKAP9->A-kinase_anchoring_protein_9,Oncogene{Bushman},chr7:91570181-91739987:+	SW579_THYROID	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000163
SW579_THYROID	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW579_THYROID	1	1	0.0236	FALSE	125	705	46	456	0	FALSE	ACH-000163
SW579_THYROID	NRIP1--AF127936.7	2	0	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW579_THYROID	1	1	0.0236	FALSE	7	44	2	41	0	FALSE	ACH-000163
SW579_THYROID	RP11-120D5.1--MID1	2	0	RP11-120D5.1	2349	chrX:11125021:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	SW579_THYROID	1	1	0.0236	FALSE	0	48	1	163	0	FALSE	ACH-000163
SW579_THYROID	RP11-358H9.1--RP11-400N13.1	2	0	RP11-358H9.1	2827	chr1:222626082:-	RP11-400N13.1	9106	chr1:222262907:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEIGHBORS[65306],RP11-358H9.1->chr1:222626082-222628047:-,RP11-400N13.1->chr1:222262511-222560776:-	SW579_THYROID	1	1	0.0236	FALSE	0	22	0	9	0	FALSE	ACH-000163
SW579_THYROID	RP11-96H19.1--RP11-446N19.1	2	0	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW579_THYROID	1	1	0.0236	FALSE	515	4851	409	746	0	FALSE	ACH-000163
SW579_THYROID	SDCCAG8--CEP170	2	0	SDCCAG8	1223	chr1:243419542:+	CEP170	46555	chr1:243336148:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Muscle_-_Skeletal=1},LOCAL_INVERSION:+:-:[670],SDCCAG8->Oncogene{Bushman},chr1:243419320-243663394:+,serologically_defined_colon_cancer_antigen_8,CEP170->centrosomal_protein_170,chr1:243287730-243418650:-	SW579_THYROID	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000163
SW579_THYROID	VPS53--GLOD4	1	4	VPS53	3923	chr17:613773:-	GLOD4	59812	chr17:679159:-	ONLY_REF_SPLICE	YES	84	179	0.06	0.03	0.0118	0.0472	GTEx_v2:{count=1;pct=0.01%;dist=Esophagus_-_Mucosa=1},LOCAL_REARRANGEMENT:-:[35380],VPS53->VPS53,_GARP_complex_subunit,chr17:411908-624957:-,GLOD4->chr17:660337-685581:-,glyoxalase_domain_containing_4	SW579_THYROID	0.03	0.06	0.059	TRUE	0	0	0	1	0	FALSE	ACH-000163
SW579_THYROID	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	16180	chr12:24073548:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0118	0.0236	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SW579_THYROID	1	1	0.0354	TRUE	160	277	29	98	0	FALSE	ACH-000163
SW579_THYROID	RP11-444D3.1--SOX5	1	2	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	NO	0	0	1	1	0.0118	0.0236	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	SW579_THYROID	1	1	0.0354	TRUE	477	1352	189	275	0	FALSE	ACH-000163
SW579_THYROID	CRIM1--FEZ2	1	1	CRIM1	18863	chr2:36749456:+	FEZ2	44713	chr2:36782891:-	ONLY_REF_SPLICE	NO	198	192	0.01	0.01	0.0118	0.0118	GTEx&tcga_normals:5/3694=0.14%,GTEx_FI:{Blood_Vessel=[count:4=pct:1.1],Adipose_Tissue=[count:3=pct:1.0],Colon=[count:1=pct:0.5]},GTEx_v2:{count=32;pct=0.37%;dist=Cells_-_Transformed_fibroblasts=7,Artery_-_Aorta=4,Adipose_-_Subcutaneous=4,Muscle_-_Skeletal=4,Artery_-_Tibial=3,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Coronary=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Colon_-_Transverse=1},{Klijn_CCL:Lung=2},LOCAL_INVERSION:+:-:[292],CRIM1->chr2:36583069-36778278:+,cysteine_rich_transmembrane_BMP_regulator_1_(chordin-like),FEZ2->chr2:36778570-36873230:-,fasciculation_and_elongation_protein_zeta_2	SW579_THYROID	0.01	0.01	0.0236	FALSE	2	2	0	15	0	FALSE	ACH-000163
SW579_THYROID	DANCR--ITGB3BP	1	1	DANCR	1530	chr4:53579126:+	ITGB3BP	18619	chr1:63920639:-	ONLY_REF_SPLICE	NO	581	54	0	0.04	0.0118	0.0118	DANCR->chr4:53578597-53586518:+,differentiation_antagonizing_non-protein_coding_RNA,ITGB3BP->chr1:63906441-64059392:-,integrin_subunit_beta_3_binding_protein	SW579_THYROID	0	0.04	0.0236	FALSE	0	0	0	9	0	FALSE	ACH-000163
SW579_THYROID	MLLT10--DNAJC1	1	1	MLLT10	23278	chr10:22002879:+	DNAJC1	47756	chr10:22055238:-	ONLY_REF_SPLICE	YES	35	87	0.05	0.02	0.0118	0.0118	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1},LOCAL_INVERSION:+:-:[12907],MLLT10->Oncogene{Bushman},chr10:21823094-22032559:+,myeloid/lymphoid_or_mixed-lineage_leukemia;_translocated_to,_10,DNAJC1->DnaJ_heat_shock_protein_family_(Hsp40)_member_C1,chr10:22045466-22292698:-	SW579_THYROID	0.02	0.05	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000163
SW579_THYROID	NRIP1--AF127936.7	1	1	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.2	1	0.0118	0.0118	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	SW579_THYROID	0.2	1	0.0236	FALSE	164	806	69	479	0	FALSE	ACH-000163
SW579_THYROID	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	NO	0	0	1	1	0.0118	0.0118	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW579_THYROID	1	1	0.0236	FALSE	192	492	57	212	0	FALSE	ACH-000163
SW579_THYROID	RP11-96H19.1--RP11-446N19.1	1	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0118	0.0118	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	SW579_THYROID	1	1	0.0236	FALSE	407	2205	196	549	0	FALSE	ACH-000163
SW579_THYROID	TSPAN5--RAP1GDS1	1	1	TSPAN5	1484	chr4:99579297:-	RAP1GDS1	23522	chr4:99264290:+	ONLY_REF_SPLICE	YES	49	90	0.04	0.02	0.0118	0.0118	GTEx&tcga_normals:2/3694=0.05%,GTEx_v2:{count=4;pct=0.05%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Brain_-_Hippocampus=1,Thyroid=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_INVERSION:-:+:[26506],TSPAN5->chr4:99391518-99579780:-,tetraspanin_5,RAP1GDS1->Oncogene{Bushman},Rap1_GTPase-GDP_dissociation_stimulator_1,chr4:99182535-99365012:+	SW579_THYROID	0.02	0.04	0.0236	TRUE	0	0	0	2	0	FALSE	ACH-000163
SW579_THYROID	USP32--APPBP2	1	1	USP32	3790	chr17:58469243:-	APPBP2	50704	chr17:58556632:-	ONLY_REF_SPLICE	YES	13	44	0.13	0.04	0.0118	0.0118	YOSHIHARA_TCGA_num_samples[BRCA:1|LUAD:1],LOCAL_REARRANGEMENT:-:[20689],USP32->Oncogene{Bushman},chr17:58256455-58499831:-,ubiquitin_specific_peptidase_32,APPBP2->amyloid_beta_precursor_protein_binding_protein_2,chr17:58520520-58603580:-	SW579_THYROID	0.04	0.13	0.0236	TRUE	0	0	0	1	0	FALSE	ACH-000163
SW579_THYROID	ZNF823--SKIV2L2	1	1	ZNF823	1193	chr19:11849632:-	SKIV2L2	13543	chr5:54623544:+	ONLY_REF_SPLICE	YES	7	134	0.22	0.01	0.0118	0.0118	ZNF823->chr19:11832080-11849824:-,zinc_finger_protein_823,SKIV2L2->Ski2_like_RNA_helicase_2,chr5:54603588-54721409:+	SW579_THYROID	0.01	0.22	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000163
HCC1171_LUNG	TRAF4--CBX1	266	33	TRAF4	1272	chr17:27071273:+	CBX1	15008	chr17:46154403:-	ONLY_REF_SPLICE	YES	88	457	0.77	0.4	2.3751	0.2946	TRAF4->Oncogene{Bushman},TNF_receptor_associated_factor_4,chr17:27071002-27077974:+,CBX1->chr17:46147414-46178883:-,chromobox_1	HCC1171_LUNG	0.4	0.77	2.6697	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	TIMM23B--LINC00843	105	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.9375	0.1429	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HCC1171_LUNG	1	1	1.0804	TRUE	508	994	45	981	0	FALSE	ACH-000578
HCC1171_LUNG	NEDD8--TOLLIP	94	7	NEDD8	1205	chr14:24701456:-	TOLLIP	19150	chr11:1311639:-	ONLY_REF_SPLICE	YES	209	60	0.33	0.63	0.8393	0.0625	NEDD8->chr14:24686058-24701660:-,neural_precursor_cell_expressed,_developmentally_down-regulated_8,TOLLIP->chr11:1295601-1330884:-,toll_interacting_protein	HCC1171_LUNG	0.33	0.63	0.9018	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	MT-TA--MT-TC	66	4	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5893	0.0357	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1171_LUNG	1	1	0.625	FALSE	462	80	0	856	0	FALSE	ACH-000578
HCC1171_LUNG	ZNF654--HMGB2	66	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5893	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HCC1171_LUNG	1	1	0.5893	TRUE	0	0	0	518	0	FALSE	ACH-000578
HCC1171_LUNG	FGD4--TACO1	60	11	FGD4	1431	chr12:32552893:+	TACO1	39325	chr17:61681894:+	ONLY_REF_SPLICE	YES	1	27	0.99	0.72	0.5357	0.0982	FGD4->FYVE,_RhoGEF_and_PH_domain_containing_4,chr12:32552463-32798984:+,TACO1->chr17:61678231-61685725:+,translational_activator_of_cytochrome_c_oxidase_I	HCC1171_LUNG	0.72	0.99	0.6339	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	TIMM23--RP11-464F9.1	57	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	144	2	0.29	0.97	0.5089	0.0089	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HCC1171_LUNG	0.29	0.97	0.5178	TRUE	519	3926	326	965	0	FALSE	ACH-000578
HCC1171_LUNG	NRIP1--AF127936.7	31	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.76	1	0.2768	0.0089	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1171_LUNG	0.76	1	0.2857	FALSE	292	1546	117	613	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	3	109	MT-CO3	1469	chrM:9675:+	MT-ATP6	4737	chrM:8479:+	INCL_NON_REF_SPLICE	YES	9	0	0.93	1	0.0268	0.9732	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.93	1	1	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	29	2	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	8	0	0.79	1	0.2589	0.0179	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.79	1	0.2768	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	3	102	MT-CO3	1400	chrM:9606:+	MT-ATP6	4746	chrM:8488:+	INCL_NON_REF_SPLICE	NO	10	0	0.91	1	0.0268	0.9107	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.91	1	0.9375	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	NDUFB10--AC141586.5	27	6	NDUFB10	1247	chr16:2009755:+	AC141586.5	7449	chr16:2660463:+	ONLY_REF_SPLICE	YES	287	25	0.1	0.57	0.2411	0.0536	NDUFB10->NADH:ubiquinone_oxidoreductase_subunit_B10,chr16:2009509-2011976:+,AC141586.5->chr16:2653351-2680495:+	HCC1171_LUNG	0.1	0.57	0.2947	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	10	69	MT-CO3	1126	chrM:9332:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	8	4	0.91	0.95	0.0893	0.6161	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.91	0.95	0.7054	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	MT-ND6--MT-TE	26	4	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2321	0.0357	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1171_LUNG	1	1	0.2678	FALSE	499	1288	110	792	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	6	76	MT-CO3	1465	chrM:9671:+	MT-ATP6	5216	chrM:8958:+	INCL_NON_REF_SPLICE	YES	10	39	0.89	0.68	0.0536	0.6786	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.68	0.89	0.7322	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	3	84	MT-CO3	1220	chrM:9426:+	MT-ATP6	4973	chrM:8715:+	INCL_NON_REF_SPLICE	YES	7	17	0.93	0.84	0.0268	0.75	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.84	0.93	0.7768	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	4	76	MT-CO3	1083	chrM:9289:+	MT-ATP6	4730	chrM:8472:+	INCL_NON_REF_SPLICE	NO	2	0	0.98	1	0.0357	0.6786	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.98	1	0.7143	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	RP11-123O10.4--GRIP1	22	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1964	0.0268	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1171_LUNG	1	1	0.2232	FALSE	416	2512	207	587	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	6	66	MT-CO3	1075	chrM:9281:+	MT-ATP6	5242	chrM:8984:+	INCL_NON_REF_SPLICE	NO	2	5	0.97	0.94	0.0536	0.5893	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.94	0.97	0.6429	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	4	72	MT-CO3	1205	chrM:9411:+	MT-ATP6	5284	chrM:9026:+	INCL_NON_REF_SPLICE	YES	11	4	0.87	0.95	0.0357	0.6429	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.87	0.95	0.6786	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	MT-TA--MT-TC	20	5	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1786	0.0446	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1171_LUNG	1	1	0.2232	FALSE	462	80	0	856	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	3	70	MT-CO3	1155	chrM:9361:+	MT-ATP6	5330	chrM:9072:+	INCL_NON_REF_SPLICE	YES	9	5	0.89	0.94	0.0268	0.625	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.89	0.94	0.6518	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	4	66	MT-CO3	1072	chrM:9278:+	MT-ATP6	4723	chrM:8465:+	INCL_NON_REF_SPLICE	YES	2	0	0.97	1	0.0357	0.5893	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.97	1	0.625	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	4	63	MT-CO3	1075	chrM:9281:+	MT-ATP6	5301	chrM:9043:+	INCL_NON_REF_SPLICE	YES	2	4	0.97	0.94	0.0357	0.5625	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.94	0.97	0.5982	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	MT-ND6--MT-TE	15	5	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1339	0.0446	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1171_LUNG	1	1	0.1785	FALSE	499	1288	110	792	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	3	52	MT-CO3	1083	chrM:9289:+	MT-ATP6	5384	chrM:9126:+	INCL_NON_REF_SPLICE	NO	2	1	0.96	0.98	0.0268	0.4643	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.96	0.98	0.4911	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	SNX11--AC010761.9	15	1	SNX11	2518	chr17:46185395:+	AC010761.9	13943	chr17:27074190:-	INCL_NON_REF_SPLICE	YES	12	2	0.57	0.89	0.1339	0.0089	SNX11->chr17:46180719-46200436:+,sorting_nexin_11,AC010761.9->chr17:27072587-27074670:-	HCC1171_LUNG	0.57	0.89	0.1428	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	TNKS--MSRA	14	5	TNKS	18984	chr8:9567730:+	MSRA	54178	chr8:10102614:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.125	0.0446	TNKS->chr8:9413424-9639856:+,tankyrase,MSRA->chr8:9911778-10286401:+,methionine_sulfoxide_reductase_A	HCC1171_LUNG	0.95	1	0.1696	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	MT-ND5--MT-ATP8	12	0	MT-ND5	2112	chrM:13448:+	MT-ATP8	5919	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1071	0	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1171_LUNG	1	1	0.1071	FALSE	43	37	8	105	0	FALSE	ACH-000578
HCC1171_LUNG	NRIP1--AF127936.7	11	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	47	0	0.24	1	0.0982	0.0357	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1171_LUNG	0.24	1	0.1339	FALSE	125	705	46	456	0	FALSE	ACH-000578
HCC1171_LUNG	STRN3--TRAF4	11	4	STRN3	1498	chr14:31495110:-	TRAF4	28293	chr17:27074231:+	ONLY_REF_SPLICE	YES	39	128	0.28	0.1	0.0982	0.0357	STRN3->chr14:31363005-31495607:-,striatin_3,TRAF4->Oncogene{Bushman},TNF_receptor_associated_factor_4,chr17:27071002-27077974:+	HCC1171_LUNG	0.1	0.28	0.1339	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	5	27	MT-CO3	1020	chrM:9226:+	MT-ATP6	5353	chrM:9095:+	INCL_NON_REF_SPLICE	YES	1	0	0.97	1	0.0446	0.2411	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.97	1	0.2857	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	CTD-2337A12.1--CAST	10	6	CTD-2337A12.1	4828	chr5:95715356:+	CAST	17107	chr5:96011243:+	ONLY_REF_SPLICE	YES	0	79	1	0.17	0.0893	0.0536	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	HCC1171_LUNG	0.17	1	0.1429	TRUE	347	1186	183	220	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	5	26	MT-CO3	1138	chrM:9344:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	8	1	0.79	0.97	0.0446	0.2321	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.79	0.97	0.2767	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	MTAP--RP11-399D6.2	11	2	MTAP	9899	chr9:21854869:+	RP11-399D6.2	24261	chr9:22674442:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0982	0.0179	MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,RP11-399D6.2->chr9:22646199-22824212:+	HCC1171_LUNG	1	1	0.1161	TRUE	0	0	0	4	0	TRUE	ACH-000578
HCC1171_LUNG	TRAF4--CBX1	4	29	TRAF4	1272	chr17:27071273:+	CBX1	15011	chr17:46154400:-	INCL_NON_REF_SPLICE	YES	88	422	0.27	0.07	0.0357	0.2589	TRAF4->Oncogene{Bushman},TNF_receptor_associated_factor_4,chr17:27071002-27077974:+,CBX1->chr17:46147414-46178883:-,chromobox_1	HCC1171_LUNG	0.07	0.27	0.2946	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	3	30	MT-CO3	1089	chrM:9295:+	MT-ATP6	5411	chrM:9153:+	INCL_NON_REF_SPLICE	YES	2	1	0.94	0.97	0.0268	0.2679	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.94	0.97	0.2947	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	5	22	MT-CO3	1102	chrM:9308:+	MT-ATP6	5423	chrM:9165:+	INCL_NON_REF_SPLICE	YES	2	1	0.93	0.96	0.0446	0.1964	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.93	0.96	0.241	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	CTD-2008L17.1--RP11-456O19.2	9	4	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	2	0	0.87	1	0.0804	0.0357	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HCC1171_LUNG	0.87	1	0.1161	FALSE	20	187	4	79	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	3	27	MT-CO3	1020	chrM:9226:+	MT-ATP6	5299	chrM:9041:+	INCL_NON_REF_SPLICE	YES	1	4	0.97	0.88	0.0268	0.2411	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.88	0.97	0.2679	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	MT-ND6--MT-TE	7	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0.0982	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1171_LUNG	1	1	0.1607	FALSE	499	1288	110	792	0	FALSE	ACH-000578
HCC1171_LUNG	RP11-353N4.6--SEC22B	9	3	RP11-353N4.6	3181	chr1:149577662:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	91	137	0.12	0.08	0.0804	0.0268	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HCC1171_LUNG	0.08	0.12	0.1072	TRUE	49	42	7	43	0	FALSE	ACH-000578
HCC1171_LUNG	MT-ND6--MT-TE	4	22	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0.1964	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1171_LUNG	1	1	0.2321	FALSE	499	1288	110	792	0	FALSE	ACH-000578
HCC1171_LUNG	RP11-96H19.1--RP11-446N19.1	8	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0714	0.0446	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1171_LUNG	0.93	1	0.116	FALSE	515	4851	409	746	0	FALSE	ACH-000578
HCC1171_LUNG	MT-TA--MT-TC	9	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0804	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HCC1171_LUNG	1	1	0.0804	FALSE	462	80	0	856	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	8	0	MT-CO3	1075	chrM:9281:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0714	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	1	1	0.0714	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	YLPM1--NEDD8	7	2	YLPM1	9273	chr14:75266400:+	NEDD8	36835	chr14:24687637:-	ONLY_REF_SPLICE	YES	46	411	0.16	0.02	0.0625	0.0179	YLPM1->YLP_motif_containing_1,chr14:75230069-75322244:+,NEDD8->chr14:24686058-24701660:-,neural_precursor_cell_expressed,_developmentally_down-regulated_8	HCC1171_LUNG	0.02	0.16	0.0804	TRUE	0	0	0	1	0	FALSE	ACH-000578
HCC1171_LUNG	IGFBP7--MT-ND4L	7	0	IGFBP7	1095	chr4:57976457:-	MT-ND4L	10277	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0625	0	IGFBP7->Oncogene{Bushman},chr4:57896939-57976551:-,insulin_like_growth_factor_binding_protein_7,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HCC1171_LUNG	1	1	0.0625	FALSE	1	0	0	30	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	4	12	MT-CO3	1138	chrM:9344:+	MT-ATP6	5442	chrM:9184:+	INCL_NON_REF_SPLICE	YES	8	0	0.67	1	0.0357	0.1071	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.67	1	0.1428	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	CTD-2008L17.1--RP11-456O19.2	6	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	2	1	0.82	0.9	0.0536	0.0268	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	HCC1171_LUNG	0.82	0.9	0.0804	FALSE	33	240	4	98	0	FALSE	ACH-000578
HCC1171_LUNG	RP11-353N4.6--SEC22B	6	3	RP11-353N4.6	2219	chr1:149576700:+	SEC22B	19089	chr1:145109524:+	ONLY_REF_SPLICE	YES	74	137	0.11	0.06	0.0536	0.0268	GTEx_FI:{Blood_Vessel=[count:16=pct:4.3],Nerve=[count:14=pct:8.2],Esophagus=[count:11=pct:2.7],Brain=[count:10=pct:1.5],Colon=[count:8=pct:4.2],Adipose_Tissue=[count:4=pct:1.3],Stomach=[count:2=pct:2.2],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Heart=[count:1=pct:0.4],Uterus=[count:1=pct:2.3]},RP11-353N4.6->chr1:149575482-149616786:+,SEC22B->SEC22_homolog_B,_vesicle_trafficking_protein_(gene/pseudogene),chr1:145096220-145116922:+	HCC1171_LUNG	0.06	0.11	0.0804	TRUE	49	42	7	43	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	4	10	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	11	0	0.56	1	0.0357	0.0893	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.56	1	0.125	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	MT-ND6--MT-TE	3	14	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0.125	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1171_LUNG	1	1	0.1518	FALSE	499	1288	110	792	0	FALSE	ACH-000578
HCC1171_LUNG	MT-ND5--MT-ATP8	6	1	MT-ND5	2730	chrM:14066:+	MT-ATP8	5928	chrM:8481:+	INCL_NON_REF_SPLICE	YES	4	396	0.64	0.02	0.0536	0.0089	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1171_LUNG	0.02	0.64	0.0625	FALSE	43	37	8	105	0	FALSE	ACH-000578
HCC1171_LUNG	SETDB1--MSTO1	6	1	SETDB1	4119	chr1:150902594:+	MSTO1	26839	chr1:155582635:+	ONLY_REF_SPLICE	YES	66	154	0.1	0.04	0.0536	0.0089	SETDB1->SET_domain_bifurcated_1,chr1:150898739-150937213:+,MSTO1->chr1:155579979-155718153:+,misato_1,_mitochondrial_distribution_and_morphology_regulator	HCC1171_LUNG	0.04	0.1	0.0625	TRUE	0	0	0	1	0	FALSE	ACH-000578
HCC1171_LUNG	HKR1--AC074286.1	6	0	HKR1	6449	chr19:37815167:+	AC074286.1	32222	chr2:178186965:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0536	0	HKR1->HKR1,_GLI-Kruppel_zinc_finger_family_member,Oncogene{Bushman},chr19:37803739-37860267:+,AC074286.1->chr2:178148236-178257419:-	HCC1171_LUNG	1	1	0.0536	TRUE	0	3	0	2	3	TRUE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	6	0	MT-CO3	1020	chrM:9226:+	MT-ATP6	5417	chrM:9159:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0536	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	1	1	0.0536	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	CTD-2583A14.10--AP2S1	5	3	CTD-2583A14.10	1831	chr19:58331917:+	AP2S1	13143	chr19:47342835:-	ONLY_REF_SPLICE	YES	25	337	0.24	0.02	0.0446	0.0268	CTD-2583A14.10->chr19:58331087-58370309:+,AP2S1->adaptor_related_protein_complex_2_sigma_1_subunit,chr19:47341393-47354249:-	HCC1171_LUNG	0.02	0.24	0.0714	TRUE	0	0	0	1	0	FALSE	ACH-000578
HCC1171_LUNG	CTD-2583A14.10--AP2S1	5	3	CTD-2583A14.10	1227	chr19:58331313:+	AP2S1	13143	chr19:47342835:-	ONLY_REF_SPLICE	YES	33	337	0.2	0.02	0.0446	0.0268	CTD-2583A14.10->chr19:58331087-58370309:+,AP2S1->adaptor_related_protein_complex_2_sigma_1_subunit,chr19:47341393-47354249:-	HCC1171_LUNG	0.02	0.2	0.0714	TRUE	0	0	0	1	0	FALSE	ACH-000578
HCC1171_LUNG	TRAF4--CBX1	4	7	TRAF4	1272	chr17:27071273:+	CBX1	15871	chr17:46153540:-	ONLY_REF_SPLICE	YES	88	416	0.11	0.03	0.0357	0.0625	TRAF4->Oncogene{Bushman},TNF_receptor_associated_factor_4,chr17:27071002-27077974:+,CBX1->chr17:46147414-46178883:-,chromobox_1	HCC1171_LUNG	0.03	0.11	0.0982	TRUE	0	0	0	1	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	3	10	MT-CO3	1173	chrM:9379:+	MT-ATP6	5450	chrM:9192:+	INCL_NON_REF_SPLICE	YES	11	0	0.54	1	0.0268	0.0893	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.54	1	0.1161	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	RP11-120D5.1--MID1	5	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	1	15	0.86	0.29	0.0446	0.0089	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	HCC1171_LUNG	0.29	0.86	0.0535	FALSE	16	356	14	466	0	FALSE	ACH-000578
HCC1171_LUNG	AC002066.1--SEPT9	5	0	AC002066.1	1112	chr7:116139408:-	SEPT9	44221	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	AC002066.1->chr7:115878314-116139519:-,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	HCC1171_LUNG	1	1	0.0446	TRUE	0	0	0	2	0	TRUE	ACH-000578
HCC1171_LUNG	AFTPH--ZNF638	5	0	AFTPH	5401	chr2:64794847:+	ZNF638	23240	chr2:71575883:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0446	0	AFTPH->aftiphilin,chr2:64751465-64820139:+,ZNF638->chr2:71503691-71662199:+,zinc_finger_protein_638	HCC1171_LUNG	1	1	0.0446	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	SETDB1--MSTO1	4	3	SETDB1	4119	chr1:150902594:+	MSTO1	26801	chr1:155582597:+	ONLY_REF_SPLICE	YES	66	156	0.1	0.04	0.0357	0.0268	SETDB1->SET_domain_bifurcated_1,chr1:150898739-150937213:+,MSTO1->chr1:155579979-155718153:+,misato_1,_mitochondrial_distribution_and_morphology_regulator	HCC1171_LUNG	0.04	0.1	0.0625	TRUE	0	0	0	1	0	FALSE	ACH-000578
HCC1171_LUNG	MT-ND5--MT-ATP8	4	2	MT-ND5	2813	chrM:14149:+	MT-ATP8	5889	chrM:8442:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0.0179	LOCAL_REARRANGEMENT:+:[3765],MT-ND5->chrM:12337-14148:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_5,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	HCC1171_LUNG	1	1	0.0536	FALSE	43	37	8	105	0	FALSE	ACH-000578
HCC1171_LUNG	PDHX--CAT	4	2	PDHX	3068	chr11:34953031:+	CAT	29038	chr11:34485652:+	ONLY_REF_SPLICE	YES	52	34	0.1	0.15	0.0357	0.0179	YOSHIHARA_TCGA_num_samples[BRCA:2],PDHX->chr11:34937376-35042138:+,pyruvate_dehydrogenase_complex_component_X,CAT->catalase,chr11:34460472-34493609:+	HCC1171_LUNG	0.1	0.15	0.0536	TRUE	0	0	0	2	0	TRUE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	4	1	MT-CO3	1083	chrM:9289:+	MT-ATP6	5457	chrM:9199:+	INCL_NON_REF_SPLICE	YES	2	0	0.71	1	0.0357	0.0089	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	0.71	1	0.0446	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	45	1	0.1	0.0357	0.0089	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1171_LUNG	0.1	1	0.0446	TRUE	465	1949	224	605	0	FALSE	ACH-000578
HCC1171_LUNG	RP11-96H19.1--RP11-446N19.1	3	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.89	1	0.0268	0.0446	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1171_LUNG	0.89	1	0.0714	FALSE	407	2205	196	549	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	4	0	MT-CO3	1028	chrM:9234:+	MT-ATP6	5434	chrM:9176:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	1	1	0.0357	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	MT-ND6--MT-TE	4	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1171_LUNG	1	1	0.0357	FALSE	499	1288	110	792	0	FALSE	ACH-000578
HCC1171_LUNG	RP11-114H23.1--RP11-114H23.2	4	0	RP11-114H23.1	1295	chr12:76377501:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0357	0	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	HCC1171_LUNG	1	1	0.0357	FALSE	81	155	12	160	0	FALSE	ACH-000578
HCC1171_LUNG	THBS1--MT-CO3	4	0	THBS1	1098	chr15:39873377:+	MT-CO3	22402	chrM:9267:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0357	0	THBS1->Oncogene{Bushman},chr15:39873280-39891667:+,thrombospondin_1,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	HCC1171_LUNG	1	1	0.0357	FALSE	0	0	0	3	0	FALSE	ACH-000578
HCC1171_LUNG	MT-ND6--MT-TE	3	2	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0.0179	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HCC1171_LUNG	1	1	0.0447	FALSE	499	1288	110	792	0	FALSE	ACH-000578
HCC1171_LUNG	NRIP1--AF127936.7	2	6	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	52	0	0.13	1	0.0179	0.0536	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1171_LUNG	0.13	1	0.0715	FALSE	164	806	69	479	0	FALSE	ACH-000578
HCC1171_LUNG	MT-CO3--MT-ATP6	3	0	MT-CO3	1434	chrM:9640:+	MT-ATP6	5462	chrM:9204:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0268	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	HCC1171_LUNG	1	1	0.0268	FALSE	189	492	56	216	0	FALSE	ACH-000578
HCC1171_LUNG	SPOP--GNAS	3	0	SPOP	1302	chr17:47755295:-	GNAS	39022	chr20:57470667:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0268	0	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HCC1171_LUNG	1	1	0.0268	TRUE	1	0	0	2	0	TRUE	ACH-000578
HCC1171_LUNG	NEDD8--TOLLIP	1	7	NEDD8	1803	chr14:24700858:-	TOLLIP	19150	chr11:1311639:-	ONLY_REF_SPLICE	NO	442	60	0.02	0.12	0.0089	0.0625	NEDD8->chr14:24686058-24701660:-,neural_precursor_cell_expressed,_developmentally_down-regulated_8,TOLLIP->chr11:1295601-1330884:-,toll_interacting_protein	HCC1171_LUNG	0.02	0.12	0.0714	TRUE	0	0	0	1	0	FALSE	ACH-000578
HCC1171_LUNG	RP11-680G10.1--GSE1	2	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	NO	0	17	1	0.19	0.0179	0.0179	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HCC1171_LUNG	0.19	1	0.0358	TRUE	458	1351	185	561	0	FALSE	ACH-000578
HCC1171_LUNG	LEMD1--SEPT9	2	1	LEMD1	2102	chr1:205418996:-	SEPT9	44751	chr17:75483506:+	ONLY_REF_SPLICE	YES	0	277	1	0.01	0.0179	0.0089	LEMD1->LEM_domain_containing_1,chr1:205350506-205425082:-,SEPT9->Oncogene{Bushman},chr17:75276651-75496678:+,septin_9	HCC1171_LUNG	0.01	1	0.0268	FALSE	0	0	0	1	0	FALSE	ACH-000578
HCC1171_LUNG	PKHD1--NPAS2	2	1	PKHD1	21269	chr6:51917874:-	NPAS2	95108	chr2:101581323:+	ONLY_REF_SPLICE	YES	2	16	0.6	0.16	0.0179	0.0089	PKHD1->Oncogene{Bushman},chr6:51480098-51952423:-,polycystic_kidney_and_hepatic_disease_1_(autosomal_recessive),NPAS2->chr2:101436614-101613291:+,neuronal_PAS_domain_protein_2	HCC1171_LUNG	0.16	0.6	0.0268	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	RP11-96H19.1--RP11-446N19.1	1	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0089	0.0446	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	HCC1171_LUNG	0.86	1	0.0535	FALSE	275	511	55	178	0	FALSE	ACH-000578
HCC1171_LUNG	AC002066.1--AC073130.1	2	0	AC002066.1	2203	chr7:116122867:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	HCC1171_LUNG	1	1	0.0179	FALSE	0	1	1	30	0	FALSE	ACH-000578
HCC1171_LUNG	AC002066.1--PHF14	2	0	AC002066.1	1112	chr7:116139408:-	PHF14	36049	chr7:11150977:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	AC002066.1->chr7:115878314-116139519:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	HCC1171_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	COA1--STK17A	2	0	COA1	1289	chr7:43769028:-	STK17A	27976	chr7:43635500:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	NEIGHBORS_OVERLAP:-:+:[18330],COA1->chr7:43648055-43769316:-,cytochrome_c_oxidase_assembly_factor_1_homolog,STK17A->chr7:43622357-43666385:+,serine/threonine_kinase_17a	HCC1171_LUNG	1	1	0.0179	FALSE	0	3	1	13	0	FALSE	ACH-000578
HCC1171_LUNG	REPS2--GPR64	2	0	REPS2	19586	chrX:17153529:+	GPR64	34198	chrX:19100864:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	REPS2->Oncogene{Bushman},RALBP1_associated_Eps_domain_containing_2,chrX:16964814-17171395:+,GPR64->chrX:19007427-19140755:-	HCC1171_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	SETDB1--MSTO1	1	4	SETDB1	4119	chr1:150902594:+	MSTO1	26413	chr1:155582209:+	ONLY_REF_SPLICE	YES	66	115	0.07	0.04	0.0089	0.0357	SETDB1->SET_domain_bifurcated_1,chr1:150898739-150937213:+,MSTO1->chr1:155579979-155718153:+,misato_1,_mitochondrial_distribution_and_morphology_regulator	HCC1171_LUNG	0.04	0.07	0.0446	TRUE	0	0	0	1	0	FALSE	ACH-000578
HCC1171_LUNG	SPOP--NCOR1	2	0	SPOP	1302	chr17:47755295:-	NCOR1	27786	chr17:16097953:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0179	0	SPOP->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr17:47676246-47755596:-,speckle_type_BTB/POZ_protein,NCOR1->Oncogene{Bushman},chr17:15932471-16121499:-,nuclear_receptor_corepressor_1	HCC1171_LUNG	1	1	0.0179	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	ELL--FKBP8	1	1	ELL	1207	chr19:18632731:-	FKBP8	21177	chr19:18652805:-	ONLY_REF_SPLICE	YES	25	102	0.07	0.02	0.0089	0.0089	GTEx_FI:{Esophagus=[count:1=pct:0.2],Whole_Blood=[count:1=pct:0.8]},{Klijn_CCL:Brain=1},LOCAL_REARRANGEMENT:-:[9624],ELL->Oncogene{Bushman},chr19:18553473-18632937:-,elongation_factor_for_RNA_polymerase_II,FKBP8->FK506_binding_protein_8,chr19:18642561-18654887:-	HCC1171_LUNG	0.02	0.07	0.0178	TRUE	2	2	0	6	0	FALSE	ACH-000578
HCC1171_LUNG	FAHD1--TSC2	1	1	FAHD1	4060	chr16:1888135:+	TSC2	36890	chr16:2131596:+	ONLY_REF_SPLICE	YES	4	45	0.33	0.04	0.0089	0.0089	FAHD1->chr16:1876968-1890208:+,fumarylacetoacetate_hydrolase_domain_containing_1,TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2	HCC1171_LUNG	0.04	0.33	0.0178	TRUE	0	0	0	1	0	TRUE	ACH-000578
HCC1171_LUNG	NRIP1--AF127936.7	1	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	10	9	0.17	0.18	0.0089	0.0089	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HCC1171_LUNG	0.17	0.18	0.0178	FALSE	25	145	6	90	0	FALSE	ACH-000578
HCC1171_LUNG	PARD3--CCNY	1	1	PARD3	2552	chr10:34985246:-	CCNY	48336	chr10:35772332:+	ONLY_REF_SPLICE	YES	48	92	0.04	0.02	0.0089	0.0089	GTEx&tcga_normals:1/3694=0.03%,PARD3->chr10:34398488-35104253:-,par-3_family_cell_polarity_regulator,CCNY->chr10:35535953-35860852:+,cyclin_Y	HCC1171_LUNG	0.02	0.04	0.0178	TRUE	0	0	0	1	0	FALSE	ACH-000578
HCC1171_LUNG	PNKP--PTPRH	1	1	PNKP	1856	chr19:50370311:-	PTPRH	12146	chr19:55718323:-	ONLY_REF_SPLICE	YES	66	0	0.03	1	0.0089	0.0089	PNKP->chr19:50364461-50371166:-,polynucleotide_kinase_3'-phosphatase,PTPRH->Oncogene{Bushman},chr19:55692616-55720874:-,protein_tyrosine_phosphatase,_receptor_type_H	HCC1171_LUNG	0.03	1	0.0178	TRUE	0	0	0	1	0	FALSE	ACH-000578
HCC1171_LUNG	RAB43--ISY1	1	1	RAB43	2516	chr3:128840129:-	ISY1	19087	chr3:128859328:-	ONLY_REF_SPLICE	YES	48	51	0.04	0.04	0.0089	0.0089	LOCAL_REARRANGEMENT:-:[4614],RAB43->RAB43,_member_RAS_oncogene_family,chr3:128806412-128841644:-,ISY1->ISY1_splicing_factor_homolog,chr3:128846258-128880136:-	HCC1171_LUNG	0.04	0.04	0.0178	TRUE	0	0	0	1	0	FALSE	ACH-000578
HCC1171_LUNG	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0089	0.0089	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HCC1171_LUNG	1	1	0.0178	FALSE	93	270	15	244	0	FALSE	ACH-000578
NCCSTCK140_STOMACH	ZNF251--CHL1	133	33	ZNF251	3735	chr8:145979068:-	CHL1	19682	chr3:361366:+	ONLY_REF_SPLICE	YES	16	1	0.91	0.99	1.0032	0.2489	ZNF251->chr8:145946298-145981802:-,zinc_finger_protein_251,CHL1->Oncogene{Bushman},cell_adhesion_molecule_L1_like,chr3:238279-451090:+	NCCSTCK140_STOMACH	0.91	0.99	1.2521	TRUE	0	0	0	1	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	TIMM23B--LINC00843	108	25	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.8146	0.1886	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCCSTCK140_STOMACH	1	1	1.0032	TRUE	508	994	45	981	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	PTPLAD1--IGF2	57	11	PTPLAD1	18266	chr15:65869815:+	IGF2	32735	chr11:2153242:-	INCL_NON_REF_SPLICE	YES	235	3914	0.22	0.02	0.4299	0.083	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	NCCSTCK140_STOMACH	0.02	0.22	0.5129	TRUE	0	0	0	4	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	TIMM23--RP11-464F9.1	54	3	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	74	2	0.44	0.97	0.4073	0.0226	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCCSTCK140_STOMACH	0.44	0.97	0.4299	TRUE	519	3926	326	965	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	50	2	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	8369	1427	0.01	0.04	0.3771	0.0151	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	0.01	0.04	0.3922	FALSE	231	217	16	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MDH2--MT-ND4	42	1	MDH2	7455	chr7:75692898:+	MT-ND4	14393	chrM:10874:+	INCL_NON_REF_SPLICE	YES	214	1001	0.17	0.04	0.3168	0.0075	MDH2->chr7:75677369-75696826:+,malate_dehydrogenase_2,MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4	NCCSTCK140_STOMACH	0.04	0.17	0.3243	FALSE	0	0	0	1	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	BMPR2--TIPRL	38	13	BMPR2	1615	chr2:203242273:+	TIPRL	32120	chr1:168160607:+	ONLY_REF_SPLICE	YES	24	97	0.68	0.34	0.2866	0.0981	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,TIPRL->TOR_signaling_pathway_regulator,chr1:168148171-168169950:+	NCCSTCK140_STOMACH	0.34	0.68	0.3847	TRUE	0	0	0	1	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	MT-TA--MT-TC	39	7	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2942	0.0528	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCCSTCK140_STOMACH	1	1	0.347	FALSE	462	80	0	856	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND6--MT-TE	39	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2942	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCCSTCK140_STOMACH	1	1	0.2942	FALSE	499	1288	110	792	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	C15orf57--CBX3	27	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	73	15	0.36	0.73	0.2037	0.1056	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCCSTCK140_STOMACH	0.36	0.73	0.3093	TRUE	267	562	48	632	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	NRIP1--AF127936.7	23	4	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	3	0	0.9	1	0.1735	0.0302	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCCSTCK140_STOMACH	0.9	1	0.2037	FALSE	292	1546	117	613	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND6--MT-TE	23	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1735	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCCSTCK140_STOMACH	1	1	0.1735	FALSE	499	1288	110	792	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	DCAF6--TADA1	22	3	DCAF6	3532	chr1:167921099:+	TADA1	36819	chr1:166831649:-	ONLY_REF_SPLICE	YES	18	34	0.58	0.42	0.1659	0.0226	DCAF6->DDB1_and_CUL4_associated_factor_6,chr1:167905021-168045081:+,TADA1->chr1:166825747-166845564:-,transcriptional_adaptor_1	NCCSTCK140_STOMACH	0.42	0.58	0.1885	TRUE	0	0	0	1	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	RP11-680G10.1--GSE1	22	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	69	1	0.27	0.1659	0.0226	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCCSTCK140_STOMACH	0.27	1	0.1885	TRUE	465	1949	224	605	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	PTPLAD1--IGF2	17	8	PTPLAD1	18266	chr15:65869815:+	IGF2	32899	chr11:2153078:-	INCL_NON_REF_SPLICE	YES	235	4455	0.1	0.01	0.1282	0.0603	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	NCCSTCK140_STOMACH	0.01	0.1	0.1885	TRUE	0	0	0	4	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	17	4	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8255	5	0	0.81	0.1282	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	0	0.81	0.1584	FALSE	231	217	16	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	PTPLAD1--IGF2	14	12	PTPLAD1	18266	chr15:65869815:+	IGF2	32673	chr11:2153304:-	INCL_NON_REF_SPLICE	NO	235	3107	0.1	0.01	0.1056	0.0905	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	NCCSTCK140_STOMACH	0.01	0.1	0.1961	FALSE	0	0	0	4	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	NRIP1--AF127936.7	15	6	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	18	0	0.54	1	0.1131	0.0453	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCCSTCK140_STOMACH	0.54	1	0.1584	FALSE	125	705	46	456	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND6--MT-TE	15	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	1	0	0.94	1	0.1131	0.0151	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCCSTCK140_STOMACH	0.94	1	0.1282	FALSE	499	1288	110	792	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	13	0	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0981	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	1	1	0.0981	FALSE	230	198	14	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-CO3--MT-ATP6	4	33	MT-CO3	1220	chrM:9426:+	MT-ATP6	4726	chrM:8468:+	INCL_NON_REF_SPLICE	NO	7	0	0.84	1	0.0302	0.2489	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCCSTCK140_STOMACH	0.84	1	0.2791	FALSE	189	492	56	216	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	12	1	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8155	5	0	0.72	0.0905	0.0075	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	0	0.72	0.098	FALSE	231	205	14	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	FN1--MT-ATP8	12	0	FN1	8084	chr2:216289949:-	MT-ATP8	55057	chrM:8487:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0905	0	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	1	1	0.0905	FALSE	0	0	0	3	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND3--MT-ATP8	12	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0905	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	1	1	0.0905	FALSE	351	233	23	137	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	RP11-123O10.4--GRIP1	12	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0905	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCCSTCK140_STOMACH	1	1	0.0905	FALSE	416	2512	207	587	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	C15orf57--CBX3	10	7	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	71	15	0.19	0.53	0.0754	0.0528	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NCCSTCK140_STOMACH	0.19	0.53	0.1282	TRUE	267	562	48	632	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	RP11-96H19.1--RP11-446N19.1	10	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0754	0.0302	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCCSTCK140_STOMACH	1	1	0.1056	FALSE	407	2205	196	549	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND6--MT-TE	10	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0754	0.0151	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCCSTCK140_STOMACH	1	1	0.0905	FALSE	499	1288	110	792	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-CO3--MT-ATP6	3	29	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	3	3	0.91	0.91	0.0226	0.2187	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCCSTCK140_STOMACH	0.91	0.91	0.2413	FALSE	189	492	56	216	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	10	0	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0754	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	1	1	0.0754	FALSE	230	193	14	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	RP11-96H19.1--RP11-446N19.1	9	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.92	0.0679	0.0226	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCCSTCK140_STOMACH	0.92	1	0.0905	FALSE	515	4851	409	746	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	8	6	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	1674	16	0.01	0.47	0.0603	0.0453	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	0.01	0.47	0.1056	FALSE	216	209	16	281	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-TA--MT-TC	9	1	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0679	0.0075	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCCSTCK140_STOMACH	1	1	0.0754	FALSE	462	80	0	856	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	APP--MT-ND2	8	0	APP	11613	chr21:27394236:-	MT-ND2	32976	chrM:5270:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0603	0	APP->amyloid_beta_precursor_protein,chr21:27252861-27543446:-,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCCSTCK140_STOMACH	1	1	0.0603	FALSE	0	1	0	51	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	NRIP1--AF127936.7	6	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	23	0	0.38	1	0.0453	0.0603	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCCSTCK140_STOMACH	0.38	1	0.1056	FALSE	164	806	69	479	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	RP11-680G10.1--GSE1	7	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	25	1	0.29	0.0528	0.0226	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCCSTCK140_STOMACH	0.29	1	0.0754	TRUE	458	1351	185	561	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	5	9	MT-ND4	2320	chrM:12079:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	1	0	0.93	1	0.0377	0.0679	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	0.93	1	0.1056	FALSE	209	205	15	279	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	6	5	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8485	16	0	0.41	0.0453	0.0377	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	0	0.41	0.083	FALSE	231	217	16	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	SAMD5--SASH1	7	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	8	22	0.5	0.27	0.0528	0.0075	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NCCSTCK140_STOMACH	0.27	0.5	0.0603	TRUE	53	396	64	110	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	PTPLAD1--IGF2	5	8	PTPLAD1	18266	chr15:65869815:+	IGF2	32882	chr11:2153095:-	INCL_NON_REF_SPLICE	NO	235	4397	0.05	0	0.0377	0.0603	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	NCCSTCK140_STOMACH	0	0.05	0.098	FALSE	0	0	0	4	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ATP6--MT-CO1	6	2	MT-ATP6	1555	chrM:9081:+	MT-CO1	5335	chrM:6557:+	INCL_NON_REF_SPLICE	YES	2614	15734	0	0	0.0453	0.0151	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCCSTCK140_STOMACH	0	0	0.0604	FALSE	183	104	9	328	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-TA--MT-TC	5	5	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0.0377	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCCSTCK140_STOMACH	1	1	0.0754	FALSE	462	80	0	856	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	AGAP1--HYDIN	6	0	AGAP1	1761	chr2:236403493:+	HYDIN	109534	chr16:70926432:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0453	0	AGAP1->ArfGAP_with_GTPase_domain,_ankyrin_repeat_and_PH_domain_1,chr2:236402733-237040444:+,HYDIN->HYDIN,_axonemal_central_pair_apparatus_protein,chr16:70841281-71264625:-	NCCSTCK140_STOMACH	1	1	0.0453	TRUE	0	0	0	1	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	6	0	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	1	1	0.0453	FALSE	231	204	14	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND6--MT-TE	6	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCCSTCK140_STOMACH	1	1	0.0453	FALSE	499	1288	110	792	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND6--MT-TE	6	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0453	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCCSTCK140_STOMACH	1	1	0.0453	FALSE	499	1288	110	792	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-TA--MT-TC	4	8	MT-TA	1057	chrM:5599:-	MT-TC	4027	chrM:5869:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.0603	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCCSTCK140_STOMACH	1	1	0.0905	FALSE	462	80	0	856	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	PTPLAD1--IGF2	3	12	PTPLAD1	18266	chr15:65869815:+	IGF2	32692	chr11:2153285:-	INCL_NON_REF_SPLICE	NO	235	3181	0.06	0	0.0226	0.0905	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	NCCSTCK140_STOMACH	0	0.06	0.1131	FALSE	0	0	0	4	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	PTPLAD1--IGF2	3	12	PTPLAD1	18266	chr15:65869815:+	IGF2	32656	chr11:2153321:-	INCL_NON_REF_SPLICE	NO	235	2535	0.06	0.01	0.0226	0.0905	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	NCCSTCK140_STOMACH	0.01	0.06	0.1131	FALSE	0	0	0	4	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	PTPLAD1--IGF2	3	12	PTPLAD1	18265	chr15:65869814:+	IGF2	32687	chr11:2153290:-	INCL_NON_REF_SPLICE	YES	239	3458	0.06	0	0.0226	0.0905	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	NCCSTCK140_STOMACH	0	0.06	0.1131	TRUE	0	0	0	4	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	BMPR2--TIPRL	2	14	BMPR2	1615	chr2:203242273:+	TIPRL	31020	chr1:168154017:+	ONLY_REF_SPLICE	YES	24	96	0.4	0.14	0.0151	0.1056	BMPR2->bone_morphogenetic_protein_receptor_type_2,chr2:203241659-203432474:+,TIPRL->TOR_signaling_pathway_regulator,chr1:168148171-168169950:+	NCCSTCK140_STOMACH	0.14	0.4	0.1207	TRUE	0	0	0	1	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	4	5	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8333	16	0	0.36	0.0302	0.0377	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	0	0.36	0.0679	FALSE	231	215	16	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	4	5	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	8069	0	0	1	0.0302	0.0377	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	0	1	0.0679	FALSE	231	217	16	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	4	5	MT-ND4	1998	chrM:11757:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	8814	5	0	0.64	0.0302	0.0377	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	0	0.64	0.0679	FALSE	231	217	16	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	PTPLAD1--IGF2	5	1	PTPLAD1	18254	chr15:65869803:+	IGF2	33003	chr11:2152974:-	INCL_NON_REF_SPLICE	YES	209	5606	0.03	0	0.0377	0.0075	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	NCCSTCK140_STOMACH	0	0.03	0.0452	FALSE	0	0	0	4	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	3	8	MT-ND4	2031	chrM:11790:+	MT-ATP8	5420	chrM:8407:+	INCL_NON_REF_SPLICE	YES	8429	0	0	1	0.0226	0.0603	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	0	1	0.0829	FALSE	231	215	16	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	5	0	MT-ND4	1273	chrM:11032:+	MT-ATP8	5504	chrM:8491:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0377	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	1	1	0.0377	FALSE	231	205	14	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ATP6--MT-CO1	4	2	MT-ATP6	1477	chrM:9003:+	MT-CO1	5114	chrM:6336:+	INCL_NON_REF_SPLICE	YES	5728	13383	0	0	0.0302	0.0151	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCCSTCK140_STOMACH	0	0	0.0453	FALSE	183	104	9	328	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-CO1--MT-ND2	4	2	MT-CO1	1603	chrM:6506:+	MT-ND2	5988	chrM:4915:+	INCL_NON_REF_SPLICE	YES	12848	6096	0	0	0.0302	0.0151	LOCAL_REARRANGEMENT:+:[393],MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NCCSTCK140_STOMACH	0	0	0.0453	FALSE	55	19	1	13	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	3	6	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	8225	0	0	1	0.0226	0.0453	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	0	1	0.0679	FALSE	231	217	16	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND6--MT-TE	4	2	MT-ND6	1109	chrM:14565:-	MT-TE	4566	chrM:14702:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.0151	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCCSTCK140_STOMACH	1	1	0.0453	FALSE	499	1288	110	792	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-CO3--MT-ATP6	4	1	MT-CO3	1146	chrM:9352:+	MT-ATP6	5456	chrM:9198:+	INCL_NON_REF_SPLICE	YES	4	0	0.56	1	0.0302	0.0075	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCCSTCK140_STOMACH	0.56	1	0.0377	FALSE	189	492	56	216	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	3	5	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	8071	16	0	0.33	0.0226	0.0377	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	0	0.33	0.0603	FALSE	231	217	16	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	PTPLAD1--IGF2	3	5	PTPLAD1	18252	chr15:65869801:+	IGF2	32771	chr11:2153206:-	INCL_NON_REF_SPLICE	YES	213	4223	0.04	0	0.0226	0.0377	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	NCCSTCK140_STOMACH	0	0.04	0.0603	FALSE	0	0	0	4	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ATP6--MT-CO1	4	0	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCCSTCK140_STOMACH	1	1	0.0302	FALSE	183	104	9	328	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ATP6--MT-CO1	4	0	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCCSTCK140_STOMACH	1	1	0.0302	FALSE	183	104	9	328	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	4	0	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	1	1	0.0302	FALSE	230	198	14	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	3	3	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	8862	734	0	0.01	0.0226	0.0226	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	0	0.01	0.0452	FALSE	231	217	16	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	RP11-168O22.1--PCDH15	3	3	RP11-168O22.1	3305	chr10:57125852:-	PCDH15	9774	chr10:56926411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0226	0.0226	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	NCCSTCK140_STOMACH	1	1	0.0452	TRUE	14	7	0	7	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.0226	0.0226	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCCSTCK140_STOMACH	0.86	1	0.0452	FALSE	467	2173	244	435	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ATP6--MT-CO1	3	2	MT-ATP6	1225	chrM:8751:+	MT-CO1	5165	chrM:6387:+	INCL_NON_REF_SPLICE	YES	10256	13341	0	0	0.0226	0.0151	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCCSTCK140_STOMACH	0	0	0.0377	FALSE	183	104	9	328	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND6--MT-TE	3	2	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0.0151	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCCSTCK140_STOMACH	1	1	0.0377	FALSE	499	1288	110	792	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND6--MT-TE	3	2	MT-ND6	1195	chrM:14479:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	1	0	0.83	1	0.0226	0.0151	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCCSTCK140_STOMACH	0.83	1	0.0377	FALSE	499	1288	110	792	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	RP11-624L4.1--RP11-265N7.1	3	2	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	20	0	0.2	1	0.0226	0.0151	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	NCCSTCK140_STOMACH	0.2	1	0.0377	FALSE	0	20	1	20	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ATP6--MT-CO1	3	1	MT-ATP6	1408	chrM:8934:+	MT-CO1	5334	chrM:6556:+	INCL_NON_REF_SPLICE	YES	8522	15582	0	0	0.0226	0.0075	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCCSTCK140_STOMACH	0	0	0.0301	FALSE	183	104	9	328	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ATP6--MT-CO1	3	1	MT-ATP6	1174	chrM:8700:+	MT-CO1	5204	chrM:6426:+	INCL_NON_REF_SPLICE	YES	9724	13025	0	0	0.0226	0.0075	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCCSTCK140_STOMACH	0	0	0.0301	FALSE	183	104	9	328	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	3	1	MT-ND4	1299	chrM:11058:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	NO	9201	0	0	1	0.0226	0.0075	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	0	1	0.0301	FALSE	231	205	14	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	3	1	MT-ND4	1246	chrM:11005:+	MT-ATP8	5434	chrM:8421:+	INCL_NON_REF_SPLICE	YES	7097	0	0	1	0.0226	0.0075	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	0	1	0.0301	FALSE	231	204	14	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND4--MT-ATP8	3	1	MT-ND4	1565	chrM:11324:+	MT-ATP8	5527	chrM:8514:+	INCL_NON_REF_SPLICE	YES	9808	1658	0	0	0.0226	0.0075	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCCSTCK140_STOMACH	0	0	0.0301	FALSE	231	217	16	283	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	RP11-476K15.1--CTD-2015H3.2	3	1	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	2	0	0.67	1	0.0226	0.0075	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	NCCSTCK140_STOMACH	0.67	1	0.0301	FALSE	0	46	0	73	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	RP11-96H19.1--RP11-446N19.1	2	5	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0.0377	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCCSTCK140_STOMACH	1	1	0.0528	FALSE	275	511	55	178	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	ACTN4--MT-CO1	3	0	ACTN4	15632	chr19:39214926:+	MT-CO1	26356	chrM:6541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCCSTCK140_STOMACH	1	1	0.0226	FALSE	0	0	0	30	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	FOXO1--RP11-172E9.2	3	0	FOXO1	2015	chr13:41239720:-	RP11-172E9.2	12287	chr13:40924439:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	FOXO1->Oncogene{Bushman},chr13:41129804-41240734:-,forkhead_box_O1,RP11-172E9.2->chr13:40918094-40924440:-	NCCSTCK140_STOMACH	1	1	0.0226	TRUE	0	0	0	3	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	MT-ATP6--MT-CO1	3	0	MT-ATP6	1123	chrM:8649:+	MT-CO1	5246	chrM:6468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCCSTCK140_STOMACH	1	1	0.0226	FALSE	183	104	9	328	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-CO3--MT-ATP6	3	0	MT-CO3	1116	chrM:9322:+	MT-ATP6	5461	chrM:9203:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	NCCSTCK140_STOMACH	1	1	0.0226	FALSE	189	492	56	216	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCCSTCK140_STOMACH	1	1	0.0226	FALSE	499	1288	110	792	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCCSTCK140_STOMACH	1	1	0.0226	FALSE	499	1288	110	792	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	PTPLAD1--IGF2	3	0	PTPLAD1	18226	chr15:65869775:+	IGF2	32899	chr11:2153078:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	NCCSTCK140_STOMACH	1	1	0.0226	TRUE	0	0	0	4	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	PTPLAD1--IGF2	3	0	PTPLAD1	18227	chr15:65869776:+	IGF2	32642	chr11:2153335:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	PTPLAD1->chr15:65822756-65870687:+,IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2	NCCSTCK140_STOMACH	1	1	0.0226	TRUE	0	0	0	4	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	RP11-644C3.1--RP11-71G7.1	3	0	RP11-644C3.1	5443	chr3:176361844:-	RP11-71G7.1	12960	chr3:176322474:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	NEIGHBORS[8409],RP11-644C3.1->chr3:176361729-176585626:-,RP11-71G7.1->chr3:176321931-176353320:-	NCCSTCK140_STOMACH	1	1	0.0226	FALSE	0	5	0	2	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	TRIM29--RPS28	3	0	TRIM29	4810	chr11:120008041:-	RPS28	25450	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0226	0	TRIM29->chr11:119981983-120056237:-,tripartite_motif_containing_29,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	NCCSTCK140_STOMACH	1	1	0.0226	TRUE	0	0	0	1	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	AP003900.6--AC008079.9	2	1	AP003900.6	3299	chr21:11174002:+	AC008079.9	9069	chr22:18682508:-	ONLY_REF_SPLICE	YES	5	0	0.38	1	0.0151	0.0075	AP003900.6->chr21:11169720-11184046:+,AC008079.9->chr22:18660805-18688682:-	NCCSTCK140_STOMACH	0.38	1	0.0226	TRUE	0	1	0	3	1	TRUE	ACH-000110
NCCSTCK140_STOMACH	NRIP1--AF127936.7	2	1	NRIP1	1256	chr21:16437066:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	3	11	0.5	0.21	0.0151	0.0075	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCCSTCK140_STOMACH	0.21	0.5	0.0226	FALSE	25	145	6	90	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	NRIP1--AF127936.7	2	1	NRIP1	2336	chr21:16415816:-	AF127936.7	21300	chr21:16197945:-	ONLY_REF_SPLICE	YES	18	11	0.14	0.21	0.0151	0.0075	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCCSTCK140_STOMACH	0.14	0.21	0.0226	FALSE	7	44	2	41	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	RP11-168O22.1--PCDH15	2	1	RP11-168O22.1	2183	chr10:57335410:-	PCDH15	9774	chr10:56926411:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0.0075	GTEx_FI:{Testis=[count:12=pct:11.4],Adrenal_Gland=[count:11=pct:12.9],Pituitary=[count:2=pct:3.8],Brain=[count:1=pct:0.2]},RP11-168O22.1->chr10:57007515-57356993:-,PCDH15->chr10:55562531-57387702:-,protocadherin-related_15	NCCSTCK140_STOMACH	1	1	0.0226	TRUE	18	36	1	9	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	AP003900.6--AC008079.9	2	0	AP003900.6	1122	chr21:11169841:+	AC008079.9	9069	chr22:18682508:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	AP003900.6->chr21:11169720-11184046:+,AC008079.9->chr22:18660805-18688682:-	NCCSTCK140_STOMACH	1	1	0.0151	TRUE	0	0	0	2	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	CIB1--PKD2	2	0	CIB1	1379	chr15:90776901:-	PKD2	11798	chr4:88959403:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	HGNC_GENEFAM,CIB1->calcium_and_integrin_binding_1,chr15:90773207-90777279:-,PKD2->chr4:88928820-88998929:+,polycystin_2,_transient_receptor_potential_cation_channel	NCCSTCK140_STOMACH	1	1	0.0151	TRUE	0	0	0	1	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	HOXD11--NFE2L2	2	0	HOXD11	1411	chr2:176969354:+	NFE2L2	19035	chr2:178098999:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	HOXD11->Oncogene{Bushman},chr2:176968944-176974722:+,homeobox_D11,NFE2L2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr2:178092323-178257425:-,nuclear_factor,_erythroid_2_like_2	NCCSTCK140_STOMACH	1	1	0.0151	TRUE	0	1	0	2	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	NDUFV3--U2AF1	2	0	NDUFV3	5809	chr21:44317157:+	U2AF1	26761	chr21:44515853:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Substantia_nigra=1},NDUFV3->NADH:ubiquinone_oxidoreductase_subunit_V3,chr21:44299754-44333414:+,U2AF1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},U2_small_nuclear_RNA_auxiliary_factor_1,chr21:44513066-44527697:-	NCCSTCK140_STOMACH	1	1	0.0151	TRUE	0	5	0	8	0	TRUE	ACH-000110
NCCSTCK140_STOMACH	RP11-123O10.4--GRIP1	2	0	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0151	0	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NCCSTCK140_STOMACH	1	1	0.0151	FALSE	93	270	15	244	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	C11orf73--PICALM	1	1	C11orf73	3558	chr11:86017524:+	PICALM	14527	chr11:85742653:-	ONLY_REF_SPLICE	YES	95	133	0.02	0.01	0.0075	0.0075	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=4;pct=0.05%;dist=Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1},C11orf73->chr11:86013253-86056969:+,chromosome_11_open_reading_frame_73,PICALM->Oncogene{Bushman},chr11:85668727-85780924:-,phosphatidylinositol_binding_clathrin_assembly_protein	NCCSTCK140_STOMACH	0.01	0.02	0.015	FALSE	1	2	0	10	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	CTD-2337A12.1--CAST	1	1	CTD-2337A12.1	4828	chr5:95715356:+	CAST	19889	chr5:96031540:+	ONLY_REF_SPLICE	YES	0	328	1	0.01	0.0075	0.0075	GTEx_FI:{Blood_Vessel=[count:189=pct:51.2],Esophagus=[count:139=pct:34.3],Adipose_Tissue=[count:74=pct:24.8],Brain=[count:49=pct:7.4],Heart=[count:47=pct:18.7],Thyroid=[count:37=pct:20.9],Breast=[count:33=pct:29.7],Skin=[count:26=pct:8.3],Lung=[count:21=pct:12.6],Pancreas=[count:19=pct:10.5],Colon=[count:17=pct:8.9],Prostate=[count:16=pct:26.2],Stomach=[count:16=pct:18.0],Vagina=[count:16=pct:29.1],Muscle=[count:14=pct:6.0],Ovary=[count:11=pct:20.8],Salivary_Gland=[count:10=pct:25.6],Nerve=[count:7=pct:4.1],Bladder=[count:5=pct:55.6],Uterus=[count:5=pct:11.6],Pituitary=[count:4=pct:7.7],Testis=[count:3=pct:2.9],Liver=[count:3=pct:2.5],Small_Intestine=[count:2=pct:3.6],Kidney=[count:2=pct:14.3],Adrenal_Gland=[count:1=pct:1.2],Cervix_Uteri=[count:1=pct:12.5]},CTD-2337A12.1->chr5:95297705-95966789:+,CAST->calpastatin,chr5:95860971-96115299:+	NCCSTCK140_STOMACH	0.01	1	0.015	FALSE	15	36	8	26	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	PLXDC2--NEBL	1	1	PLXDC2	15646	chr10:20534434:+	NEBL	64899	chr10:21101869:-	ONLY_REF_SPLICE	YES	121	44	0.02	0.04	0.0075	0.0075	GTEx_v2:{count=4;pct=0.05%;dist=Lung=1,Esophagus_-_Mucosa=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Brain_-_Amygdala=1},PLXDC2->chr10:20105168-20578785:+,plexin_domain_containing_2,NEBL->chr10:21068902-21463116:-,nebulette	NCCSTCK140_STOMACH	0.02	0.04	0.015	TRUE	0	0	0	1	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	RP11-120D5.1--MID1	1	1	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	NO	3	115	0.4	0.02	0.0075	0.0075	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCCSTCK140_STOMACH	0.02	0.4	0.015	FALSE	16	356	14	466	0	FALSE	ACH-000110
NCCSTCK140_STOMACH	TSC2--TACC3	1	1	TSC2	3376	chr16:2100487:+	TACC3	49785	chr4:1741429:+	ONLY_REF_SPLICE	YES	58	43	0.03	0.04	0.0075	0.0075	TSC2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr16:2097466-2138716:+,tuberous_sclerosis_2,TACC3->Oncogene{Bushman},chr4:1723227-1746898:+,transforming_acidic_coiled-coil_containing_protein_3	NCCSTCK140_STOMACH	0.03	0.04	0.015	TRUE	0	0	0	1	0	FALSE	ACH-000110
NCIH684_LIVER	MT-TA--MT-TN	150	0	MT-TA	1049	chrM:5607:-	MT-TN	4118	chrM:5681:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.179	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH684_LIVER	1	1	1.179	FALSE	369	2501	205	193	0	FALSE	ACH-000089
NCIH684_LIVER	TFG--GPR128	104	38	TFG	5019	chr3:100438902:+	GPR128	18130	chr3:100348442:+	ONLY_REF_SPLICE	YES	166	1	0.46	0.99	0.8175	0.2987	GTEx&tcga_normals:78/3694=2.11%,GTEx:1.93%,GTEx_FI:{Heart=[count:12=pct:4.8],Esophagus=[count:9=pct:2.2],Skin=[count:9=pct:2.9],Brain=[count:8=pct:1.2],Blood_Vessel=[count:8=pct:2.2],Muscle=[count:7=pct:3.0],Nerve=[count:5=pct:2.9],Blood=[count:5=pct:2.9],Lung=[count:5=pct:3.0],Colon=[count:5=pct:2.6],Thyroid=[count:5=pct:2.8],Testis=[count:5=pct:4.8],Pancreas=[count:4=pct:2.2],Adrenal_Gland=[count:4=pct:4.7],Liver=[count:3=pct:2.5],Prostate=[count:3=pct:4.9],Adipose_Tissue=[count:2=pct:0.7],Bladder=[count:2=pct:22.2],Ovary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Whole_Blood=[count:1=pct:0.8],Stomach=[count:1=pct:1.1],Fallopian_Tube=[count:1=pct:16.7],Breast=[count:1=pct:0.9],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=168;pct=1.94%;dist=Lung=11,Skin_-_Sun_Exposed_(Lower_leg)=10,Thyroid=9,Artery_-_Tibial=7,Artery_-_Aorta=7,Nerve_-_Tibial=7,Adipose_-_Subcutaneous=7,Muscle_-_Skeletal=7,Heart_-_Left_Ventricle=7,Heart_-_Atrial_Appendage=7,Testis=7,Esophagus_-_Muscularis=6,Breast_-_Mammary_Tissue=5,Pituitary=5,Esophagus_-_Mucosa=5,Cells_-_EBV-transformed_lymphocytes=5,Pancreas=4,Prostate=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Liver=3,Adipose_-_Visceral_(Omentum)=3,Whole_Blood=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Ovary=2,Uterus=2,Esophagus_-_Gastroesophageal_Junction=2,Spleen=2,Brain_-_Cerebellum=2,Colon_-_Sigmoid=2,Bladder=2,Brain_-_Cortex=2,Small_Intestine_-_Terminal_Ileum=1,Stomach=1,Cervix_-_Endocervix=1,Minor_Salivary_Gland=1,Artery_-_Coronary=1,Brain_-_Hypothalamus=1,Cervix_-_Ectocervix=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Amygdala=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1,Fallopian_Tube=1},LOCAL_REARRANGEMENT:+:[13882],TFG->Oncogene{Bushman},TRK-fused_gene,chr3:100428205-100467810:+,GPR128->chr3:100328433-100414323:+	NCIH684_LIVER	0.46	0.99	1.1162	TRUE	12	123	7	17	0	FALSE	ACH-000089
NCIH684_LIVER	TIMM23B--LINC00843	100	15	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.786	0.1179	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NCIH684_LIVER	1	1	0.9039	TRUE	508	994	45	981	0	FALSE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TC	62	13	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4873	0.1022	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH684_LIVER	1	1	0.5895	FALSE	462	80	0	856	0	FALSE	ACH-000089
NCIH684_LIVER	TIMM23--RP11-464F9.1	61	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.4795	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NCIH684_LIVER	1	1	0.4795	TRUE	519	3926	326	965	0	FALSE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TN	21	92	MT-TA	1057	chrM:5599:-	MT-TN	3999	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1651	0.7231	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH684_LIVER	1	1	0.8882	FALSE	369	2501	205	193	0	FALSE	ACH-000089
NCIH684_LIVER	MAN1A1--GMPR	38	11	MAN1A1	2299	chr6:119669628:-	GMPR	24336	chr6:16247073:+	ONLY_REF_SPLICE	YES	0	9	1	0.84	0.2987	0.0865	MAN1A1->chr6:119498374-119670926:-,mannosidase_alpha_class_1A_member_1,GMPR->chr6:16238811-16295780:+,guanosine_monophosphate_reductase	NCIH684_LIVER	0.84	1	0.3852	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TN	27	49	MT-TA	1062	chrM:5594:-	MT-TN	4101	chrM:5698:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2122	0.3852	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH684_LIVER	1	1	0.5974	FALSE	369	2501	205	193	0	FALSE	ACH-000089
NCIH684_LIVER	ZNF654--HMGB2	38	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2987	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NCIH684_LIVER	1	1	0.2987	TRUE	0	0	0	518	0	FALSE	ACH-000089
NCIH684_LIVER	MT-ND6--MT-TE	36	3	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.283	0.0236	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH684_LIVER	1	1	0.3066	FALSE	499	1288	110	792	0	FALSE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TN	25	33	MT-TA	1036	chrM:5620:-	MT-TN	4081	chrM:5718:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1965	0.2594	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH684_LIVER	1	1	0.4559	FALSE	369	2501	205	193	0	FALSE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TN	17	65	MT-TA	1065	chrM:5591:-	MT-TN	4096	chrM:5703:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1336	0.5109	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH684_LIVER	1	1	0.6445	FALSE	369	2501	205	193	0	FALSE	ACH-000089
NCIH684_LIVER	MT-ND6--MT-TE	26	17	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	3	0	0.93	1	0.2044	0.1336	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH684_LIVER	0.93	1	0.338	FALSE	499	1288	110	792	0	FALSE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TN	29	0	MT-TA	1052	chrM:5604:-	MT-TN	4120	chrM:5679:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2279	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH684_LIVER	1	1	0.2279	FALSE	369	2501	205	193	0	FALSE	ACH-000089
NCIH684_LIVER	MT-ND6--MT-TE	26	4	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2044	0.0314	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH684_LIVER	1	1	0.2358	FALSE	499	1288	110	792	0	FALSE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TN	13	30	MT-TA	1049	chrM:5607:-	MT-TN	4093	chrM:5706:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1022	0.2358	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH684_LIVER	1	1	0.338	FALSE	369	2501	205	193	0	FALSE	ACH-000089
NCIH684_LIVER	OR51S1--TP53I11	20	0	OR51S1	1616	chr11:4869899:-	TP53I11	17470	chr11:44954601:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1572	0	GTEx_FI:{Adipose_Tissue=[count:116=pct:38.9],Blood_Vessel=[count:103=pct:27.9],Brain=[count:88=pct:13.4],Blood=[count:75=pct:43.1],Esophagus=[count:72=pct:17.8],Heart=[count:64=pct:25.5],Skin=[count:61=pct:19.4],Spleen=[count:61=pct:54.5],Lung=[count:53=pct:31.7],Whole_Blood=[count:52=pct:39.4],Breast=[count:50=pct:45.0],Thyroid=[count:45=pct:25.4],Nerve=[count:41=pct:24.1],Colon=[count:38=pct:19.9],Prostate=[count:25=pct:41.0],Small_Intestine=[count:16=pct:29.1],Pancreas=[count:16=pct:8.8],Stomach=[count:14=pct:15.7],Vagina=[count:12=pct:21.8],Adrenal_Gland=[count:7=pct:8.2],Salivary_Gland=[count:7=pct:17.9],Uterus=[count:7=pct:16.3],Pituitary=[count:6=pct:11.5],Fallopian_Tube=[count:5=pct:83.3],Muscle=[count:3=pct:1.3],Kidney=[count:3=pct:21.4],Ovary=[count:3=pct:5.7],Testis=[count:1=pct:1.0],Liver=[count:1=pct:0.8],Cervix_Uteri=[count:1=pct:12.5]},OR51S1->chr11:4869427-4870514:-,olfactory_receptor_family_51_subfamily_S_member_1,TP53I11->chr11:44907454-44972840:-,tumor_protein_p53_inducible_protein_11	NCIH684_LIVER	1	1	0.1572	TRUE	402	216	10	229	0	FALSE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TN	8	43	MT-TA	1062	chrM:5594:-	MT-TN	4103	chrM:5696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0629	0.338	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH684_LIVER	1	1	0.4009	FALSE	369	2501	205	193	0	FALSE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TC	14	11	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.11	0.0865	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH684_LIVER	1	1	0.1965	FALSE	462	80	0	856	0	FALSE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TN	16	0	MT-TA	1061	chrM:5595:-	MT-TN	4127	chrM:5672:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1258	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH684_LIVER	1	1	0.1258	FALSE	369	2501	205	193	0	FALSE	ACH-000089
NCIH684_LIVER	UBE2R2--CREB3	15	1	UBE2R2	1368	chr9:33817932:+	CREB3	14227	chr9:35735106:+	ONLY_REF_SPLICE	YES	136	129	0.11	0.11	0.1179	0.0079	UBE2R2->chr9:33817565-33920402:+,ubiquitin_conjugating_enzyme_E2_R2,CREB3->cAMP_responsive_element_binding_protein_3,chr9:35732332-35737001:+	NCIH684_LIVER	0.11	0.11	0.1258	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TC	15	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1179	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH684_LIVER	1	1	0.1179	FALSE	462	80	0	856	0	FALSE	ACH-000089
NCIH684_LIVER	HSP90AB1--MT-RNR2	10	0	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0786	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH684_LIVER	1	1	0.0786	FALSE	13	9	0	364	0	FALSE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TN	10	0	MT-TA	1018	chrM:5638:-	MT-TN	4110	chrM:5689:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0786	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH684_LIVER	1	1	0.0786	FALSE	369	2501	205	193	0	FALSE	ACH-000089
NCIH684_LIVER	PMF1--RAB25	10	0	PMF1	1184	chr1:156182967:+	RAB25	18056	chr1:156038061:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0786	0	PMF1->chr1:156182784-156212874:+,polyamine-modulated_factor_1,RAB25->RAB25,_member_RAS_oncogene_family,chr1:156030951-156040295:+	NCIH684_LIVER	1	1	0.0786	TRUE	0	1	0	1	1	TRUE	ACH-000089
NCIH684_LIVER	MT-ND6--MT-TE	3	24	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	3	0	0.9	1	0.0236	0.1886	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH684_LIVER	0.9	1	0.2122	FALSE	499	1288	110	792	0	FALSE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TC	5	16	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0.1258	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH684_LIVER	1	1	0.1651	FALSE	462	80	0	856	0	FALSE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TN	9	0	MT-TA	1004	chrM:5652:-	MT-TN	4095	chrM:5704:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0707	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH684_LIVER	1	1	0.0707	FALSE	369	2501	205	193	0	FALSE	ACH-000089
NCIH684_LIVER	FARP2--RP11-480C22.1	8	3	FARP2	17591	chr2:242375953:+	RP11-480C22.1	46859	chr11:127204919:+	ONLY_REF_SPLICE	YES	30	0	0.27	1	0.0629	0.0236	FARP2->FERM,_ARH/RhoGEF_and_pleckstrin_domain_protein_2,chr2:242295658-242434256:+,RP11-480C22.1->chr11:127140957-127206928:+	NCIH684_LIVER	0.27	1	0.0865	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	MT-ND6--MT-TE	3	23	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0.1808	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH684_LIVER	1	1	0.2044	FALSE	499	1288	110	792	0	FALSE	ACH-000089
NCIH684_LIVER	MT-ATP6--MT-CO1	8	2	MT-ATP6	1158	chrM:8684:+	MT-CO1	5324	chrM:6546:+	INCL_NON_REF_SPLICE	YES	9961	15688	0	0	0.0629	0.0157	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH684_LIVER	0	0	0.0786	FALSE	183	104	9	328	0	FALSE	ACH-000089
NCIH684_LIVER	MT-ND6--MT-TE	3	22	MT-ND6	1196	chrM:14478:-	MT-TE	4557	chrM:14711:-	INCL_NON_REF_SPLICE	YES	3	0	0.89	1	0.0236	0.1729	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH684_LIVER	0.89	1	0.1965	FALSE	499	1288	110	792	0	FALSE	ACH-000089
NCIH684_LIVER	GMPR--MAN1A1	7	4	GMPR	4579	chr6:16254966:+	MAN1A1	18977	chr6:119628157:-	ONLY_REF_SPLICE	YES	3	0	0.79	1	0.055	0.0314	GMPR->chr6:16238811-16295780:+,guanosine_monophosphate_reductase,MAN1A1->chr6:119498374-119670926:-,mannosidase_alpha_class_1A_member_1	NCIH684_LIVER	0.79	1	0.0864	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TN	8	0	MT-TA	1062	chrM:5594:-	MT-TN	4129	chrM:5670:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0629	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH684_LIVER	1	1	0.0629	FALSE	369	2501	205	193	0	FALSE	ACH-000089
NCIH684_LIVER	SLC1A5--MT-ND4L	8	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0629	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH684_LIVER	1	1	0.0629	FALSE	0	0	0	189	0	FALSE	ACH-000089
NCIH684_LIVER	GMPR--MAN1A1	6	6	GMPR	6810	chr6:16274727:+	MAN1A1	18977	chr6:119628157:-	ONLY_REF_SPLICE	YES	9	0	0.57	1	0.0472	0.0472	GMPR->chr6:16238811-16295780:+,guanosine_monophosphate_reductase,MAN1A1->chr6:119498374-119670926:-,mannosidase_alpha_class_1A_member_1	NCIH684_LIVER	0.57	1	0.0944	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	XXbac-BPG252P9.9--IFI27	7	2	XXbac-BPG252P9.9	1162	chr6:30691493:-	IFI27	6941	chr14:94577108:+	INCL_NON_REF_SPLICE	YES	1792	0	0	1	0.055	0.0157	XXbac-BPG252P9.9->chr6:30690882-30691654:-,IFI27->Oncogene{Bushman},chr14:94571182-94583033:+,interferon_alpha_inducible_protein_27	NCIH684_LIVER	0	1	0.0707	FALSE	0	2	0	13	2	FALSE	ACH-000089
NCIH684_LIVER	GMPR--MAN1A1	5	9	GMPR	6810	chr6:16274727:+	MAN1A1	17908	chr6:119653169:-	ONLY_REF_SPLICE	YES	9	0	0.61	1	0.0393	0.0707	GMPR->chr6:16238811-16295780:+,guanosine_monophosphate_reductase,MAN1A1->chr6:119498374-119670926:-,mannosidase_alpha_class_1A_member_1	NCIH684_LIVER	0.61	1	0.11	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	HSP90AB1--MT-RNR2	7	0	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.055	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NCIH684_LIVER	1	1	0.055	FALSE	13	9	0	364	0	FALSE	ACH-000089
NCIH684_LIVER	PLCB1--ENTPD6	6	2	PLCB1	2652	chr20:8131018:+	ENTPD6	54830	chr20:25187712:+	ONLY_REF_SPLICE	YES	0	328	1	0.02	0.0472	0.0157	PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1,ENTPD6->chr20:25176329-25207365:+,ectonucleoside_triphosphate_diphosphohydrolase_6_(putative)	NCIH684_LIVER	0.02	1	0.0629	TRUE	0	0	0	1	0	FALSE	ACH-000089
NCIH684_LIVER	RP11-680G10.1--GSE1	6	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	5	1	0.58	0.0472	0.0079	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	NCIH684_LIVER	0.58	1	0.0551	TRUE	465	1949	224	605	0	FALSE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TC	3	11	MT-TA	1054	chrM:5602:-	MT-TC	4024	chrM:5872:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0.0865	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NCIH684_LIVER	1	1	0.1101	FALSE	462	80	0	856	0	FALSE	ACH-000089
NCIH684_LIVER	IGF2--MT-ND4L	5	2	IGF2	12317	chr11:2152522:-	MT-ND4L	17499	chrM:10471:+	INCL_NON_REF_SPLICE	YES	4704	0	0	1	0.0393	0.0157	IGF2->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},chr11:2150342-2170833:-,insulin_like_growth_factor_2,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NCIH684_LIVER	0	1	0.055	FALSE	0	0	0	1	0	FALSE	ACH-000089
NCIH684_LIVER	NRIP1--AF127936.7	5	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	9	0	0.44	1	0.0393	0.0157	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH684_LIVER	0.44	1	0.055	FALSE	164	806	69	479	0	FALSE	ACH-000089
NCIH684_LIVER	SUN1--AMPH	5	1	SUN1	23266	chr7:905704:+	AMPH	51695	chr7:38475988:-	ONLY_REF_SPLICE	YES	259	0	0.02	1	0.0393	0.0079	SUN1->Sad1_and_UNC84_domain_containing_1,chr7:855528-936072:+,AMPH->amphiphysin,chr7:38423305-38671167:-	NCIH684_LIVER	0.02	1	0.0472	TRUE	0	0	0	1	0	FALSE	ACH-000089
NCIH684_LIVER	FAM84A--MT-CO3	5	0	FAM84A	2516	chr2:14774325:+	MT-CO3	16547	chrM:9427:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	FAM84A->chr2:14772810-14790933:+,family_with_sequence_similarity_84_member_A,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH684_LIVER	1	1	0.0393	FALSE	0	0	0	3	0	FALSE	ACH-000089
NCIH684_LIVER	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0393	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NCIH684_LIVER	1	1	0.0393	TRUE	0	0	0	434	0	FALSE	ACH-000089
NCIH684_LIVER	NRIP1--AF127936.7	5	0	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0393	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH684_LIVER	1	1	0.0393	FALSE	292	1546	117	613	0	FALSE	ACH-000089
NCIH684_LIVER	MT-ATP6--MT-CO1	4	2	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	8175	15378	0	0	0.0314	0.0157	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH684_LIVER	0	0	0.0471	FALSE	183	104	9	328	0	FALSE	ACH-000089
NCIH684_LIVER	MT-ATP6--MT-CO1	4	2	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	8286	15611	0	0	0.0314	0.0157	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	NCIH684_LIVER	0	0	0.0471	FALSE	183	104	9	328	0	FALSE	ACH-000089
NCIH684_LIVER	LGALS4--MT-ATP8	4	1	LGALS4	5424	chr19:39294386:-	MT-ATP8	10526	chrM:8392:+	INCL_NON_REF_SPLICE	YES	3211	0	0	1	0.0314	0.0079	LGALS4->chr19:39292311-39304004:-,lectin,_galactoside_binding_soluble_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH684_LIVER	0	1	0.0393	FALSE	0	0	0	3	0	FALSE	ACH-000089
NCIH684_LIVER	SAMD5--SASH1	4	1	SAMD5	1461	chr6:147830523:+	SASH1	15026	chr6:148711270:+	ONLY_REF_SPLICE	YES	10	1	0.33	0.83	0.0314	0.0079	GTEx&tcga_normals:32/3694=0.87%,GTEx:0.52%,GTEx_FI:{Brain=[count:19=pct:2.9],Lung=[count:7=pct:4.2],Esophagus=[count:6=pct:1.5],Testis=[count:5=pct:4.8],Uterus=[count:4=pct:9.3],Adrenal_Gland=[count:3=pct:3.5],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Liver=[count:3=pct:2.5],Blood_Vessel=[count:3=pct:0.8],Kidney=[count:3=pct:21.4],Heart=[count:2=pct:0.8],Small_Intestine=[count:1=pct:1.8],Pituitary=[count:1=pct:1.9],Thyroid=[count:1=pct:0.6],Colon=[count:1=pct:0.5],Pancreas=[count:1=pct:0.6],Vagina=[count:1=pct:1.8],Nerve=[count:1=pct:0.6]},HGNC_GENEFAM,SAMD5->chr6:147830063-148058683:+,sterile_alpha_motif_domain_containing_5,SASH1->SAM_and_SH3_domain_containing_1,chr6:148593440-148873186:+	NCIH684_LIVER	0.33	0.83	0.0393	TRUE	53	396	64	110	0	FALSE	ACH-000089
NCIH684_LIVER	CMTM8--CMTM7	4	0	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0314	0	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	NCIH684_LIVER	1	1	0.0314	FALSE	118	557	29	88	0	FALSE	ACH-000089
NCIH684_LIVER	MT-ND3--MT-ATP8	4	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NCIH684_LIVER	1	1	0.0314	FALSE	351	233	23	137	0	FALSE	ACH-000089
NCIH684_LIVER	MT-ND6--MT-TE	4	0	MT-ND6	1013	chrM:14661:-	MT-TE	4525	chrM:14743:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0314	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH684_LIVER	1	1	0.0314	FALSE	499	1288	110	792	0	FALSE	ACH-000089
NCIH684_LIVER	MT-ND6--MT-TE	3	3	MT-ND6	1034	chrM:14640:-	MT-TE	4533	chrM:14735:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0.0236	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH684_LIVER	1	1	0.0472	FALSE	499	1288	110	792	0	FALSE	ACH-000089
NCIH684_LIVER	PLCB1--ENTPD6	3	2	PLCB1	2652	chr20:8131018:+	ENTPD6	54276	chr20:25187158:+	ONLY_REF_SPLICE	YES	0	424	1	0.01	0.0236	0.0157	PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1,ENTPD6->chr20:25176329-25207365:+,ectonucleoside_triphosphate_diphosphohydrolase_6_(putative)	NCIH684_LIVER	0.01	1	0.0393	FALSE	0	0	0	1	0	FALSE	ACH-000089
NCIH684_LIVER	NRIP1--AF127936.7	3	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	4	0	0.5	1	0.0236	0.0079	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NCIH684_LIVER	0.5	1	0.0315	FALSE	125	705	46	456	0	FALSE	ACH-000089
NCIH684_LIVER	RP11-96H19.1--RP11-446N19.1	3	1	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0236	0.0079	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NCIH684_LIVER	1	1	0.0315	FALSE	515	4851	409	746	0	FALSE	ACH-000089
NCIH684_LIVER	MT-ND6--MT-TE	3	0	MT-ND6	1043	chrM:14631:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH684_LIVER	1	1	0.0236	FALSE	499	1288	110	792	0	FALSE	ACH-000089
NCIH684_LIVER	MT-ND6--MT-TE	3	0	MT-ND6	1057	chrM:14617:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH684_LIVER	1	1	0.0236	FALSE	499	1288	110	792	0	FALSE	ACH-000089
NCIH684_LIVER	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NCIH684_LIVER	1	1	0.0236	FALSE	499	1288	110	792	0	FALSE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TN	3	0	MT-TA	1055	chrM:5601:-	MT-TN	4124	chrM:5675:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH684_LIVER	1	1	0.0236	FALSE	369	2501	205	193	0	FALSE	ACH-000089
NCIH684_LIVER	MT-TA--MT-TN	3	0	MT-TA	1048	chrM:5608:-	MT-TN	4111	chrM:5688:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[2],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TN->chrM:5657-5729:-,mitochondrially_encoded_tRNA_asparagine	NCIH684_LIVER	1	1	0.0236	FALSE	369	2501	205	193	0	FALSE	ACH-000089
NCIH684_LIVER	PIGT--MT-CO3	3	0	PIGT	1184	chr20:44044900:+	MT-CO3	11739	chrM:9566:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	PIGT->chr20:44044717-44054884:+,phosphatidylinositol_glycan_anchor_biosynthesis_class_T,MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III	NCIH684_LIVER	1	1	0.0236	FALSE	0	0	0	5	0	FALSE	ACH-000089
NCIH684_LIVER	PPDPF--EEF2	3	0	PPDPF	1591	chr20:62152667:+	EEF2	5509	chr19:3985442:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	PPDPF->chr20:62152077-62153559:+,pancreatic_progenitor_cell_differentiation_and_proliferation_factor,EEF2->chr19:3976054-3985467:-,eukaryotic_translation_elongation_factor_2	NCIH684_LIVER	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	SMEK2--SERP1	3	0	SMEK2	18208	chr2:55795442:-	SERP1	31671	chr3:150284769:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0236	0	SMEK2->chr2:55774428-55846015:-,SERP1->chr3:150259781-150321015:-,stress-associated_endoplasmic_reticulum_protein_1	NCIH684_LIVER	1	1	0.0236	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	RP11-120D5.1--MID1	2	2	RP11-120D5.1	4510	chrX:11074056:-	MID1	17672	chrX:10588459:-	ONLY_REF_SPLICE	YES	0	10	1	0.29	0.0157	0.0157	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NCIH684_LIVER	0.29	1	0.0314	FALSE	0	23	1	67	0	FALSE	ACH-000089
NCIH684_LIVER	VTI1A--RP11-57H14.3	2	1	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	34	0	0.08	1	0.0157	0.0079	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	NCIH684_LIVER	0.08	1	0.0236	FALSE	272	151	14	158	0	FALSE	ACH-000089
NCIH684_LIVER	AFG3L1P--OGT	2	0	AFG3L1P	2378	chr16:90044210:+	OGT	34875	chrX:70774363:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	AFG3L1P->AFG3_like_matrix_AAA_peptidase_subunit_1,_pseudogene,chr16:90038994-90068569:+,OGT->O-linked_N-acetylglucosamine_(GlcNAc)_transferase,chrX:70752933-70795747:+	NCIH684_LIVER	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	CHD8--HNRNPC	2	0	CHD8	1095	chr14:21924191:-	HNRNPC	44208	chr14:21702388:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	GTEx_FI:{Whole_Blood=[count:1=pct:0.8],Esophagus=[count:1=pct:0.2],Blood_Vessel=[count:1=pct:0.3]},CHD8->chr14:21853353-21924285:-,chromodomain_helicase_DNA_binding_protein_8,HNRNPC->chr14:21677295-21737653:-,heterogeneous_nuclear_ribonucleoprotein_C_(C1/C2)	NCIH684_LIVER	1	1	0.0157	TRUE	2	8	0	24	0	FALSE	ACH-000089
NCIH684_LIVER	PPP1R12C--GAK	2	0	PPP1R12C	8950	chr19:55610152:-	GAK	24941	chr4:898567:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,GAK->Oncogene{Bushman},chr4:843064-926161:-,cyclin_G_associated_kinase	NCIH684_LIVER	1	1	0.0157	TRUE	0	1	0	2	1	TRUE	ACH-000089
NCIH684_LIVER	SEPT11--CCNI	2	0	SEPT11	1228	chr4:77871083:+	CCNI	31783	chr4:77987558:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	NCIH684_LIVER	1	1	0.0157	TRUE	0	1	0	17	0	TRUE	ACH-000089
NCIH684_LIVER	TES--CAPZA2	2	0	TES	1242	chr7:115850788:+	CAPZA2	19782	chr7:116528181:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	TES->chr7:115850547-115898837:+,testin_LIM_domain_protein,CAPZA2->capping_actin_protein_of_muscle_Z-line_alpha_subunit_2,chr7:116451124-116562103:+	NCIH684_LIVER	1	1	0.0157	TRUE	0	0	0	2	0	TRUE	ACH-000089
NCIH684_LIVER	ZFP64--RP5-1112F19.2	2	0	ZFP64	17934	chr20:50704931:-	RP5-1112F19.2	25876	chr20:50459288:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0157	0	ZFP64->Oncogene{Bushman},ZFP64_zinc_finger_protein,chr20:50668202-50820847:-,RP5-1112F19.2->chr20:50448336-50479451:-	NCIH684_LIVER	1	1	0.0157	TRUE	0	0	0	1	0	TRUE	ACH-000089
NCIH684_LIVER	PLCB1--ENTPD6	1	2	PLCB1	2652	chr20:8131018:+	ENTPD6	54833	chr20:25187715:+	ONLY_REF_SPLICE	NO	0	309	1	0.01	0.0079	0.0157	PLCB1->Oncogene{Bushman},chr20:8112824-8949003:+,phospholipase_C_beta_1,ENTPD6->chr20:25176329-25207365:+,ectonucleoside_triphosphate_diphosphohydrolase_6_(putative)	NCIH684_LIVER	0.01	1	0.0236	FALSE	0	0	0	1	0	FALSE	ACH-000089
NCIH684_LIVER	TULP4--RP11-732M18.3	1	2	TULP4	2609	chr6:158735300:+	RP11-732M18.3	28124	chr6:158703295:+	ONLY_REF_SPLICE	NO	13	0	0.19	1	0.0079	0.0157	GTEx_FI:{Brain=[count:297=pct:45.1],Skin=[count:16=pct:5.1],Heart=[count:7=pct:2.8],Testis=[count:5=pct:4.8],Lung=[count:3=pct:1.8],Esophagus=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Blood=[count:1=pct:0.6],Muscle=[count:1=pct:0.4],Colon=[count:1=pct:0.5],Stomach=[count:1=pct:1.1],Pituitary=[count:1=pct:1.9],Blood_Vessel=[count:1=pct:0.3],Uterus=[count:1=pct:2.3]},LOCAL_REARRANGEMENT:+:[302],TULP4->chr6:158733692-158932860:+,tubby_like_protein_4,RP11-732M18.3->chr6:158703295-158733390:+	NCIH684_LIVER	0.19	1	0.0236	TRUE	121	131	5	12	0	FALSE	ACH-000089
NCIH684_LIVER	CASP7--VAPB	1	1	CASP7	10365	chr10:115486193:+	VAPB	18178	chr20:56993267:+	ONLY_REF_SPLICE	YES	168	165	0.01	0.01	0.0079	0.0079	CASP7->caspase_7,chr10:115438942-115490662:+,VAPB->VAMP_(vesicle-associated_membrane_protein)-associated_protein_B_and_C,chr20:56964178-57026157:+	NCIH684_LIVER	0.01	0.01	0.0158	FALSE	0	0	0	1	0	FALSE	ACH-000089
NCIH684_LIVER	DNASE1--HN1L	1	1	DNASE1	1279	chr16:3662007:+	HN1L	25499	chr16:1735440:+	ONLY_REF_SPLICE	YES	18	46	0.1	0.04	0.0079	0.0079	DNASE1->chr16:3661729-3730144:+,deoxyribonuclease_I,HN1L->chr16:1728257-1752281:+,hematological_and_neurological_expressed_1-like	NCIH684_LIVER	0.04	0.1	0.0158	TRUE	0	0	0	1	0	FALSE	ACH-000089
NCIH684_LIVER	PUM1--EYA3	1	1	PUM1	4000	chr1:31532051:-	EYA3	52415	chr1:28304985:-	ONLY_REF_SPLICE	YES	54	19	0.04	0.1	0.0079	0.0079	PUM1->chr1:31404353-31538838:-,pumilio_RNA_binding_family_member_1,EYA3->EYA_transcriptional_coactivator_and_phosphatase_3,chr1:28296855-28415207:-	NCIH684_LIVER	0.04	0.1	0.0158	TRUE	0	0	0	1	0	FALSE	ACH-000089
NCIH684_LIVER	RP11-245P10.4--SRP9	1	1	RP11-245P10.4	1098	chr1:228595179:+	SRP9	6363	chr1:225965637:+	ONLY_REF_SPLICE	YES	1	50	0.67	0.04	0.0079	0.0079	RP11-245P10.4->chr1:228595082-228597395:+,SRP9->chr1:225965531-225978168:+,signal_recognition_particle_9kDa	NCIH684_LIVER	0.04	0.67	0.0158	TRUE	0	0	0	1	0	TRUE	ACH-000089
MDAMB361_BREAST	EZR--OSTCP1	95	29	EZR	2248	chr6:159239114:-	OSTCP1	19828	chr6:159263171:-	ONLY_REF_SPLICE	YES	347	0	0.26	1	2.9007	0.8855	LOCAL_REARRANGEMENT:-:[21705],EZR->chr6:159186773-159240444:-,ezrin,OSTCP1->chr6:159262149-159278664:-,oligosaccharyltransferase_complex_subunit_pseudogene_1	MDAMB361_BREAST	0.26	1	3.7862	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	TIMM23B--LINC00843	59	12	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.8015	0.3664	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	MDAMB361_BREAST	1	1	2.1679	TRUE	508	994	45	981	0	FALSE	ACH-000934
MDAMB361_BREAST	TIMM23--RP11-464F9.1	35	0	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	0	0	1	1	1.0687	0	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	MDAMB361_BREAST	1	1	1.0687	TRUE	519	3926	326	965	0	FALSE	ACH-000934
MDAMB361_BREAST	TMEM104--CDK12	30	17	TMEM104	5634	chr17:72786435:+	CDK12	34991	chr17:37686884:+	ONLY_REF_SPLICE	YES	13	36	0.78	0.57	0.916	0.5191	{Klijn_CCL:Breast=1},TMEM104->Oncogene{Bushman},chr17:72772622-72835918:+,transmembrane_protein_104,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	MDAMB361_BREAST	0.57	0.78	1.4351	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	BRIP1--VMP1	27	9	BRIP1	3979	chr17:59937157:-	VMP1	44452	chr17:57895073:+	ONLY_REF_SPLICE	YES	16	127	0.69	0.22	0.8244	0.2748	BRIP1->ArcherDX_panel,BRCA1_interacting_protein_C-terminal_helicase_1,FoundationOne_panel,Oncogene{Bushman},chr17:59758627-59940882:-,VMP1->chr17:57784553-57919616:+,vacuole_membrane_protein_1	MDAMB361_BREAST	0.22	0.69	1.0992	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	TMEM104--CDK12	22	18	TMEM104	5634	chr17:72786435:+	CDK12	34964	chr17:37686857:+	ONLY_REF_SPLICE	YES	13	37	0.75	0.52	0.6717	0.5496	{Klijn_CCL:Breast=1},TMEM104->Oncogene{Bushman},chr17:72772622-72835918:+,transmembrane_protein_104,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	MDAMB361_BREAST	0.52	0.75	1.2213	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	TANC2--PSMD12	24	3	TANC2	3326	chr17:61176718:+	PSMD12	56645	chr17:65346452:-	ONLY_REF_SPLICE	YES	31	219	0.47	0.11	0.7328	0.0916	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,PSMD12->chr17:65334032-65362743:-,proteasome_26S_subunit,_non-ATPase_12	MDAMB361_BREAST	0.11	0.47	0.8244	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	SUPT4H1--CEP112	18	4	SUPT4H1	4116	chr17:56424549:-	CEP112	44179	chr17:63685336:-	ONLY_REF_SPLICE	YES	176	1	0.11	0.96	0.5496	0.1221	SUPT4H1->SPT4_homolog,_DSIF_elongation_factor_subunit,chr17:56422539-56430454:-,CEP112->centrosomal_protein_112,chr17:63631656-64188202:-	MDAMB361_BREAST	0.11	0.96	0.6717	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	MAP1LC3B--ZNF821	18	2	MAP1LC3B	4437	chr16:87426073:+	ZNF821	20372	chr16:71901940:-	ONLY_REF_SPLICE	YES	78	12	0.2	0.62	0.5496	0.0611	MAP1LC3B->chr16:87417601-87438385:+,microtubule_associated_protein_1_light_chain_3_beta,ZNF821->chr16:71893583-71929239:-,zinc_finger_protein_821	MDAMB361_BREAST	0.2	0.62	0.6107	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	MT-ND6--MT-TE	18	1	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5496	0.0305	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB361_BREAST	1	1	0.5801	FALSE	499	1288	110	792	0	FALSE	ACH-000934
MDAMB361_BREAST	RP11-344E13.3--UBBP4	13	10	RP11-344E13.3	1253	chr17:20771998:+	UBBP4	34671	chr17:21730693:+	ONLY_REF_SPLICE	YES	10	0	0.7	1	0.3969	0.3053	GTEx_FI:{Testis=[count:24=pct:22.9]},RP11-344E13.3->chr17:20771746-20905589:+,UBBP4->chr17:21729601-21731762:+,ubiquitin_B_pseudogene_4	MDAMB361_BREAST	0.7	1	0.7022	TRUE	23	13	0	54	0	FALSE	ACH-000934
MDAMB361_BREAST	TOX3--GNAO1	14	3	TOX3	6771	chr16:52497846:-	GNAO1	23976	chr16:56309843:+	ONLY_REF_SPLICE	YES	15	3	0.53	0.85	0.4275	0.0916	TOX3->TOX_high_mobility_group_box_family_member_3,chr16:52471917-52581714:-,GNAO1->G_protein_subunit_alpha_o1,chr16:56225302-56391356:+	MDAMB361_BREAST	0.53	0.85	0.5191	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	TTC6--MIPOL1	12	3	TTC6	1162	chr14:38065213:+	MIPOL1	79291	chr14:37969113:+	ONLY_REF_SPLICE	YES	0	3	1	0.83	0.3664	0.0916	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAMB361_BREAST	0.83	1	0.458	TRUE	0	9	0	5	8	TRUE	ACH-000934
MDAMB361_BREAST	CDYL--CDKAL1	11	2	CDYL	6988	chr6:4777041:+	CDKAL1	32222	chr6:20955650:+	ONLY_REF_SPLICE	YES	2	8	0.87	0.62	0.3359	0.0611	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},{Klijn_CCL:Breast=1},CDYL->chr6:4706393-4955785:+,chromodomain_protein,_Y-like,CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+	MDAMB361_BREAST	0.62	0.87	0.397	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	MTMR4--CUEDC1	11	0	MTMR4	13237	chr17:56581411:-	CUEDC1	31885	chr17:55948730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3359	0	MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4,CUEDC1->CUE_domain_containing_1,Oncogene{Bushman},chr17:55938604-56032684:-	MDAMB361_BREAST	1	1	0.3359	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	RP11-123O10.4--GRIP1	10	4	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.3053	0.1221	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	MDAMB361_BREAST	1	1	0.4274	FALSE	416	2512	207	587	0	FALSE	ACH-000934
MDAMB361_BREAST	TMEM104--CDK12	6	17	TMEM104	5630	chr17:72786431:+	CDK12	34991	chr17:37686884:+	INCL_NON_REF_SPLICE	YES	13	36	0.64	0.39	0.1832	0.5191	{Klijn_CCL:Breast=1},TMEM104->Oncogene{Bushman},chr17:72772622-72835918:+,transmembrane_protein_104,CDK12->ArcherDX_panel,FoundationOne_panel,chr17:37617764-37721160:+,cyclin-dependent_kinase_12	MDAMB361_BREAST	0.39	0.64	0.7023	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	DDX42--PITPNC1	8	4	DDX42	8261	chr17:61877977:+	PITPNC1	30692	chr17:65528918:+	ONLY_REF_SPLICE	YES	138	2	0.08	0.86	0.2443	0.1221	{Klijn_CCL:Breast=1},DDX42->DEAD-box_helicase_42,chr17:61850963-61896677:+,PITPNC1->chr17:65373575-65693372:+,phosphatidylinositol_transfer_protein,_cytoplasmic_1	MDAMB361_BREAST	0.08	0.86	0.3664	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	CMTM4--AKR1C4	8	2	CMTM4	1368	chr16:66730243:-	AKR1C4	15121	chr10:5237428:+	INCL_NON_REF_SPLICE	YES	6	0	0.62	1	0.2443	0.0611	{Klijn_CCL:Breast=1},CMTM4->CKLF_like_MARVEL_transmembrane_domain_containing_4,chr16:66648653-66730610:-,AKR1C4->aldo-keto_reductase_family_1,_member_C4,chr10:5237425-5260912:+	MDAMB361_BREAST	0.62	1	0.3054	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	ELOVL5--KLHL31	7	2	ELOVL5	1333	chr6:53213615:-	KLHL31	22692	chr6:53517128:-	ONLY_REF_SPLICE	YES	142	0	0.06	1	0.2137	0.0611	ELOVL5->ELOVL_fatty_acid_elongase_5,Oncogene{Bushman},chr6:53132196-53213947:-,KLHL31->chr6:53512699-53530506:-,kelch_like_family_member_31	MDAMB361_BREAST	0.06	1	0.2748	TRUE	0	0	0	2	0	TRUE	ACH-000934
MDAMB361_BREAST	C15orf57--CBX3	5	5	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	7	12	0.59	0.45	0.1527	0.1527	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	MDAMB361_BREAST	0.45	0.59	0.3054	TRUE	267	562	48	632	0	FALSE	ACH-000934
MDAMB361_BREAST	AP003900.6--AC011718.2	6	0	AP003900.6	1122	chr21:11169841:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1832	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MDAMB361_BREAST	1	1	0.1832	TRUE	0	3	0	38	3	FALSE	ACH-000934
MDAMB361_BREAST	MT-ND6--MT-TE	5	4	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1527	0.1221	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	MDAMB361_BREAST	1	1	0.2748	FALSE	499	1288	110	792	0	FALSE	ACH-000934
MDAMB361_BREAST	TTC6--MIPOL1	6	0	TTC6	1162	chr14:38065213:+	MIPOL1	90133	chr14:38016110:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1832	0	YOSHIHARA_TCGA_num_samples[BRCA:19|LUSC:2|PRAD:3],LOCAL_REARRANGEMENT:+:[43486],TTC6->chr14:38065052-38510647:+,tetratricopeptide_repeat_domain_6,MIPOL1->chr14:37667118-38021566:+,mirror-image_polydactyly_1	MDAMB361_BREAST	1	1	0.1832	TRUE	0	2	0	2	1	TRUE	ACH-000934
MDAMB361_BREAST	RAB22A--PHACTR3	5	2	RAB22A	7087	chr20:56929321:+	PHACTR3	26268	chr20:58318162:+	ONLY_REF_SPLICE	YES	37	0	0.16	1	0.1527	0.0611	{Klijn_CCL:Breast=1},RAB22A->RAB22A,_member_RAS_oncogene_family,chr20:56884752-56942563:+,PHACTR3->chr20:58152564-58422766:+,phosphatase_and_actin_regulator_3	MDAMB361_BREAST	0.16	1	0.2138	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	WTAPP1--RUVBL1	5	0	WTAPP1	5195	chr11:102663992:+	RUVBL1	29872	chr3:127801417:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1527	0	GTEx_FI:{Brain=[count:5=pct:0.8],Colon=[count:1=pct:0.5],Vagina=[count:1=pct:1.8],Spleen=[count:1=pct:0.9],Ovary=[count:1=pct:1.9]},WTAPP1->Wilms_tumor_1_associated_protein_pseudogene_1,chr11:102617699-102707497:+,RUVBL1->Oncogene{Bushman},RuvB_like_AAA_ATPase_1,chr3:127783621-127872757:-	MDAMB361_BREAST	1	1	0.1527	TRUE	9	252	6	66	0	FALSE	ACH-000934
MDAMB361_BREAST	RP11-680G10.1--GSE1	4	2	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	40	1	0.13	0.1221	0.0611	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	MDAMB361_BREAST	0.13	1	0.1832	TRUE	465	1949	224	605	0	FALSE	ACH-000934
MDAMB361_BREAST	RP11-96H19.1--RP11-446N19.1	4	2	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	1	1	0.86	0.1221	0.0611	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB361_BREAST	0.86	1	0.1832	FALSE	515	4851	409	746	0	FALSE	ACH-000934
MDAMB361_BREAST	TANC2--MTMR4	4	2	TANC2	19699	chr17:61417693:+	MTMR4	62434	chr17:56581849:-	ONLY_REF_SPLICE	YES	17	16	0.26	0.27	0.1221	0.0611	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,MTMR4->chr17:56566898-56595266:-,myotubularin_related_protein_4	MDAMB361_BREAST	0.26	0.27	0.1832	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	TANC2--PSMD12	4	1	TANC2	3215	chr17:61176607:+	PSMD12	56645	chr17:65346452:-	ONLY_REF_SPLICE	YES	28	219	0.15	0.02	0.1221	0.0305	TANC2->chr17:61086917-61505060:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_2,PSMD12->chr17:65334032-65362743:-,proteasome_26S_subunit,_non-ATPase_12	MDAMB361_BREAST	0.02	0.15	0.1526	TRUE	0	0	0	1	0	FALSE	ACH-000934
MDAMB361_BREAST	CDYL--CDKAL1	4	0	CDYL	6988	chr6:4777041:+	CDKAL1	33389	chr6:21000458:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1221	0	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Transverse=1},{Klijn_CCL:Breast=1},CDYL->chr6:4706393-4955785:+,chromodomain_protein,_Y-like,CDKAL1->CDK5_regulatory_subunit_associated_protein_1_like_1,chr6:20534688-21232635:+	MDAMB361_BREAST	1	1	0.1221	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	PPP2R2C--ADD1	4	0	PPP2R2C	5685	chr4:6473887:-	ADD1	34252	chr4:2877623:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1221	0	PPP2R2C->chr4:6322305-6565327:-,protein_phosphatase_2_regulatory_subunit_B,_gamma,ADD1->adducin_1,chr4:2845584-2931803:+	MDAMB361_BREAST	1	1	0.1221	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	TANGO6--CES4A	3	2	TANGO6	24871	chr16:69074324:+	CES4A	33448	chr16:67034541:+	ONLY_REF_SPLICE	YES	5	0	0.5	1	0.0916	0.0611	TANGO6->chr16:68877507-69119083:+,transport_and_golgi_organization_6_homolog,CES4A->carboxylesterase_4A,chr16:67022492-67043661:+	MDAMB361_BREAST	0.5	1	0.1527	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	AP003900.6--AC011718.2	3	0	AP003900.6	3299	chr21:11174002:+	AC011718.2	11337	chr22:20654340:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0916	0	AP003900.6->chr21:11169720-11184046:+,AC011718.2->chr22:20632023-20661407:-	MDAMB361_BREAST	1	1	0.0916	TRUE	0	5	0	45	5	FALSE	ACH-000934
MDAMB361_BREAST	DOCK1--CSMD1	2	1	DOCK1	29798	chr10:129046373:+	CSMD1	120097	chr8:2976109:-	ONLY_REF_SPLICE	YES	9	0	0.25	1	0.0611	0.0305	DOCK1->chr10:128593978-129250781:+,dedicator_of_cytokinesis_1,CSMD1->CUB_and_Sushi_multiple_domains_1,chr8:2792875-4852494:-	MDAMB361_BREAST	0.25	1	0.0916	TRUE	0	0	0	1	0	TRUE	ACH-000934
MDAMB361_BREAST	RP11-96H19.1--RP11-446N19.1	1	3	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0.0916	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	MDAMB361_BREAST	1	1	0.1221	FALSE	192	492	57	212	0	FALSE	ACH-000934
MDAMB361_BREAST	MAP1LC3B--ZNF821	1	1	MAP1LC3B	4437	chr16:87426073:+	ZNF821	21517	chr16:71898951:-	ONLY_REF_SPLICE	YES	78	17	0.03	0.11	0.0305	0.0305	MAP1LC3B->chr16:87417601-87438385:+,microtubule_associated_protein_1_light_chain_3_beta,ZNF821->chr16:71893583-71929239:-,zinc_finger_protein_821	MDAMB361_BREAST	0.03	0.11	0.061	TRUE	0	0	0	1	0	FALSE	ACH-000934
MDAMB361_BREAST	PDE4D--CCT6B	1	1	PDE4D	8944	chr5:59481384:-	CCT6B	71982	chr17:33259519:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0305	0.0305	PDE4D->Oncogene{Bushman},chr5:58264865-59817947:-,phosphodiesterase_4D,CCT6B->chaperonin_containing_TCP1_subunit_6B,chr17:33254878-33308097:-	MDAMB361_BREAST	1	1	0.061	TRUE	0	0	0	1	0	TRUE	ACH-000934
KYSE150_OESOPHAGUS	TIMM23B--LINC00843	110	57	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.4314	0.7417	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KYSE150_OESOPHAGUS	1	1	2.1731	TRUE	508	994	45	981	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	TIMM23--RP11-464F9.1	63	8	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	453	6	0.14	0.92	0.8198	0.1041	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KYSE150_OESOPHAGUS	0.14	0.92	0.9239	TRUE	519	3926	326	965	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	C15orf57--CBX3	27	27	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	85	77	0.39	0.41	0.3513	0.3513	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KYSE150_OESOPHAGUS	0.39	0.41	0.7026	TRUE	267	562	48	632	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-TA--MT-TC	16	1	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.2082	0.013	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	KYSE150_OESOPHAGUS	1	1	0.2212	FALSE	462	80	0	856	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-ATP6--MT-CO1	14	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5329	chrM:6551:+	INCL_NON_REF_SPLICE	YES	9528	21071	0	0	0.1822	0.013	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE150_OESOPHAGUS	0	0	0.1952	FALSE	183	104	9	328	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	NPM1P24--SET	12	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1562	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KYSE150_OESOPHAGUS	1	1	0.1562	TRUE	0	0	0	434	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	NRIP1--AF127936.7	11	3	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	0	0.88	1	0.1431	0.039	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE150_OESOPHAGUS	0.88	1	0.1821	FALSE	292	1546	117	613	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	PDE8A--SND1	8	15	PDE8A	9757	chr15:85626875:+	SND1	34799	chr7:127326667:+	ONLY_REF_SPLICE	YES	60	354	0.28	0.06	0.1041	0.1952	{Klijn_CCL:Head-Neck=1},PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A,SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1	KYSE150_OESOPHAGUS	0.06	0.28	0.2993	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	ABCB9--ERP29	8	13	ABCB9	9470	chr12:123444182:-	ERP29	32257	chr12:112451258:+	INCL_NON_REF_SPLICE	YES	15	5	0.58	0.81	0.1041	0.1692	ABCB9->ATP_binding_cassette_subfamily_B_member_9,chr12:123405498-123466196:-,ERP29->chr12:112451120-112461255:+,endoplasmic_reticulum_protein_29	KYSE150_OESOPHAGUS	0.58	0.81	0.2733	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	MT-ND4--MT-ATP8	11	1	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	NO	10502	2	0	0.86	0.1431	0.013	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE150_OESOPHAGUS	0	0.86	0.1561	FALSE	230	193	14	283	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	HSPBP1--ZSWIM6	11	0	HSPBP1	1851	chr19:55790899:-	ZSWIM6	11318	chr5:60628541:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1431	0	GTEx&tcga_normals:6/3694=0.16%,GTEx_FI:{Brain=[count:24=pct:3.6],Esophagus=[count:6=pct:1.5],Testis=[count:4=pct:3.8],Lung=[count:4=pct:2.4],Adipose_Tissue=[count:4=pct:1.3],Skin=[count:3=pct:1.0],Muscle=[count:3=pct:1.3],Thyroid=[count:2=pct:1.1],Blood_Vessel=[count:2=pct:0.5],Nerve=[count:2=pct:1.2],Heart=[count:2=pct:0.8],Ovary=[count:2=pct:3.8],Adrenal_Gland=[count:1=pct:1.2],Colon=[count:1=pct:0.5],Prostate=[count:1=pct:1.6],Vagina=[count:1=pct:1.8],Uterus=[count:1=pct:2.3]},GTEx_v2:{count=83;pct=0.96%;dist=Brain_-_Cortex=6,Brain_-_Caudate_(basal_ganglia)=5,Cells_-_Transformed_fibroblasts=5,Brain_-_Hippocampus=4,Brain_-_Hypothalamus=4,Esophagus_-_Mucosa=4,Heart_-_Left_Ventricle=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Nucleus_accumbens_(basal_ganglia)=4,Brain_-_Putamen_(basal_ganglia)=3,Skin_-_Sun_Exposed_(Lower_leg)=3,Muscle_-_Skeletal=3,Artery_-_Tibial=2,Breast_-_Mammary_Tissue=2,Ovary=2,Lung=2,Brain_-_Frontal_Cortex_(BA9)=2,Pituitary=2,Uterus=2,Cells_-_EBV-transformed_lymphocytes=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Spleen=2,Testis=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Prostate=1,Artery_-_Coronary=1,Thyroid=1,Nerve_-_Tibial=1,Esophagus_-_Gastroesophageal_Junction=1,Esophagus_-_Muscularis=1,Heart_-_Atrial_Appendage=1,Colon_-_Sigmoid=1,Brain_-_Amygdala=1},HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,ZSWIM6->chr5:60628100-60841997:+,zinc_finger_SWIM-type_containing_6	KYSE150_OESOPHAGUS	1	1	0.1431	TRUE	47	32	1	28	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	RP11-123O10.4--GRIP1	9	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1171	0.026	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	KYSE150_OESOPHAGUS	1	1	0.1431	FALSE	416	2512	207	587	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	7	10	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	3	0	0.85	1	0.0911	0.1301	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE150_OESOPHAGUS	0.85	1	0.2212	FALSE	515	4851	409	746	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-CO3--MT-ATP6	8	2	MT-CO3	1141	chrM:9347:+	MT-ATP6	5289	chrM:9031:+	INCL_NON_REF_SPLICE	YES	2	1	0.83	0.91	0.1041	0.026	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE150_OESOPHAGUS	0.83	0.91	0.1301	FALSE	189	492	56	216	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	C15orf57--CBX3	3	20	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	82	79	0.22	0.23	0.039	0.2603	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KYSE150_OESOPHAGUS	0.22	0.23	0.2993	TRUE	267	562	48	632	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	SLC1A5--MT-ND4L	8	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1041	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE150_OESOPHAGUS	1	1	0.1041	FALSE	0	0	0	189	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	RP11-120D5.1--MID1	6	7	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	9	122	0.59	0.1	0.0781	0.0911	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	KYSE150_OESOPHAGUS	0.1	0.59	0.1692	FALSE	16	356	14	466	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-ND4--MT-ATP8	5	10	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	12914	0	0	1	0.0651	0.1301	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE150_OESOPHAGUS	0	1	0.1952	FALSE	231	217	16	283	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-ND4--MT-ATP8	7	1	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	10588	3	0	0.73	0.0911	0.013	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE150_OESOPHAGUS	0	0.73	0.1041	FALSE	230	198	14	283	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-ND4--MT-ATP8	4	11	MT-ND4	2029	chrM:11788:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11779	63	0	0.19	0.0521	0.1431	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE150_OESOPHAGUS	0	0.19	0.1952	FALSE	231	215	16	283	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	3	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	3	0	0.82	1	0.039	0.1431	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE150_OESOPHAGUS	0.82	1	0.1821	FALSE	407	2205	196	549	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-ND4--MT-ATP8	3	10	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	13476	63	0	0.17	0.039	0.1301	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE150_OESOPHAGUS	0	0.17	0.1691	FALSE	231	217	16	283	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-ND4--MT-ATP8	5	2	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	12442	3	0	0.7	0.0651	0.026	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE150_OESOPHAGUS	0	0.7	0.0911	FALSE	231	205	14	283	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-ND1--MT-RNR2	5	1	MT-ND1	1266	chrM:3572:+	MT-RNR2	4968	chrM:1682:+	INCL_NON_REF_SPLICE	YES	21	0	0.22	1	0.0651	0.013	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KYSE150_OESOPHAGUS	0.22	1	0.0781	FALSE	114	26	4	85	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	PDE8A--SND1	3	9	PDE8A	8668	chr15:85620018:+	SND1	34799	chr7:127326667:+	ONLY_REF_SPLICE	YES	56	354	0.18	0.03	0.039	0.1171	{Klijn_CCL:Head-Neck=1},PDE8A->chr15:85523671-85682376:+,phosphodiesterase_8A,SND1->chr7:127292234-127732661:+,staphylococcal_nuclease_and_tudor_domain_containing_1	KYSE150_OESOPHAGUS	0.03	0.18	0.1561	TRUE	0	0	0	1	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MTA1--PACS2	5	0	MTA1	1242	chr14:105886400:+	PACS2	42650	chr14:105856298:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0651	0	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1|LUSC:1],{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[21675],MTA1->Oncogene{Bushman},chr14:105886159-105937066:+,metastasis_associated_1,PACS2->chr14:105766900-105864484:+,phosphofurin_acidic_cluster_sorting_protein_2	KYSE150_OESOPHAGUS	1	1	0.0651	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	NPM1P24--SET	5	0	NPM1P24	1537	chr10:74677756:-	SET	12303	chr9:131456198:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0651	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KYSE150_OESOPHAGUS	1	1	0.0651	TRUE	0	0	0	434	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-ND4--MT-ATP8	3	7	MT-ND4	1540	chrM:11299:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	16906	63	0	0.14	0.039	0.0911	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE150_OESOPHAGUS	0	0.14	0.1301	FALSE	231	217	16	283	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-ND1--MT-RNR2	4	2	MT-ND1	1303	chrM:3609:+	MT-RNR2	5007	chrM:1721:+	INCL_NON_REF_SPLICE	YES	30	0	0.17	1	0.0521	0.026	LOCAL_REARRANGEMENT:+:[78],MT-ND1->chrM:3307-4262:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	KYSE150_OESOPHAGUS	0.17	1	0.0781	FALSE	114	26	4	85	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-ND4--MT-ATP8	3	6	MT-ND4	1439	chrM:11198:+	MT-ATP8	5423	chrM:8410:+	INCL_NON_REF_SPLICE	YES	16157	0	0	1	0.039	0.0781	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE150_OESOPHAGUS	0	1	0.1171	FALSE	231	217	16	283	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	2	10	RP11-96H19.1	3839	chr12:46848924:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.026	0.1301	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE150_OESOPHAGUS	0.92	1	0.1561	FALSE	467	2173	244	435	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	SLC7A5--MT-ND4L	4	2	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2709	0	0	1	0.0521	0.026	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE150_OESOPHAGUS	0	1	0.0781	FALSE	0	0	0	23	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-ATP6--MT-CO1	4	1	MT-ATP6	1116	chrM:8642:+	MT-CO1	5320	chrM:6542:+	INCL_NON_REF_SPLICE	NO	9551	20385	0	0	0.0521	0.013	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE150_OESOPHAGUS	0	0	0.0651	FALSE	183	104	9	328	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-ATP6--MT-CO1	4	1	MT-ATP6	1128	chrM:8654:+	MT-CO1	5332	chrM:6554:+	INCL_NON_REF_SPLICE	YES	9528	21306	0	0	0.0521	0.013	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE150_OESOPHAGUS	0	0	0.0651	FALSE	183	104	9	328	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-ND4--MT-ATP8	4	1	MT-ND4	1239	chrM:10998:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	10738	0	0	1	0.0521	0.013	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE150_OESOPHAGUS	0	1	0.0651	FALSE	231	204	14	283	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	RP11-680G10.1--GSE1	4	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	27	1	0.16	0.0521	0.013	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE150_OESOPHAGUS	0.16	1	0.0651	TRUE	458	1351	185	561	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	ACTN4--RPN2	4	0	ACTN4	15423	chr19:39214717:+	RPN2	32632	chr20:35833170:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0521	0	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,RPN2->chr20:35806813-35870022:+,ribophorin_II	KYSE150_OESOPHAGUS	1	1	0.0521	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	CDK11A--GNB1	3	4	CDK11A	4830	chr1:1650797:-	GNB1	29282	chr1:1724750:-	ONLY_REF_SPLICE	YES	209	719	0.03	0.01	0.039	0.0521	LOCAL_REARRANGEMENT:-:[60963],CDK11A->Oncogene{Bushman},chr1:1634169-1655766:-,cyclin-dependent_kinase_11A,GNB1->G_protein_subunit_beta_1,chr1:1716729-1822495:-	KYSE150_OESOPHAGUS	0.01	0.03	0.0911	FALSE	0	0	0	1	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	EXT1--SAMD12	4	0	EXT1	2769	chr8:119122324:-	SAMD12	31808	chr8:119209971:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0521	0	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1],LOCAL_REARRANGEMENT:-:[77606],EXT1->Oncogene{Bushman},chr8:118806729-119124092:-,exostosin_glycosyltransferase_1,SAMD12->chr8:119201698-119634234:-,sterile_alpha_motif_domain_containing_12	KYSE150_OESOPHAGUS	1	1	0.0521	TRUE	0	6	0	5	5	TRUE	ACH-000855
KYSE150_OESOPHAGUS	MT-ND4--MT-ATP8	3	4	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	15686	1483	0	0	0.039	0.0521	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE150_OESOPHAGUS	0	0	0.0911	FALSE	231	205	14	283	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	NRIP1--AF127936.7	3	4	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	10	0	0.41	1	0.039	0.0521	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE150_OESOPHAGUS	0.41	1	0.0911	FALSE	125	705	46	456	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	RP11-96H19.1--RP11-446N19.1	1	11	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	7967	chr12:46931285:+	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.013	0.1431	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	KYSE150_OESOPHAGUS	0.8	1	0.1561	FALSE	275	511	55	178	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	RP11-108K3.1--GLDN	2	6	RP11-108K3.1	1194	chr15:51329878:+	GLDN	9494	chr15:51669646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0.0781	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	KYSE150_OESOPHAGUS	1	1	0.1041	FALSE	0	30	1	55	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	RP11-108K3.1--GLDN	2	6	RP11-108K3.1	2262	chr15:51570247:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	2	0	0.8	1	0.026	0.0781	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	KYSE150_OESOPHAGUS	0.8	1	0.1041	FALSE	0	14	0	30	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-ATP6--MT-CO1	3	1	MT-ATP6	1112	chrM:8638:+	MT-CO1	5325	chrM:6547:+	INCL_NON_REF_SPLICE	YES	9512	20894	0	0	0.039	0.013	LOCAL_REARRANGEMENT:+:[1082],MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	KYSE150_OESOPHAGUS	0	0	0.052	FALSE	183	104	9	328	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-ND4--MT-ATP8	3	1	MT-ND4	1212	chrM:10971:+	MT-ATP8	5426	chrM:8413:+	INCL_NON_REF_SPLICE	YES	10509	0	0	1	0.039	0.013	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	KYSE150_OESOPHAGUS	0	1	0.052	FALSE	230	197	14	283	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	RP11-680G10.1--GSE1	3	1	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	36	1	0.1	0.039	0.013	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	KYSE150_OESOPHAGUS	0.1	1	0.052	TRUE	465	1949	224	605	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	HSPBP1--GRK5	3	0	HSPBP1	1848	chr19:55790902:-	GRK5	10999	chr10:120967223:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	HSPBP1->HSPA_(heat_shock_70kDa)_binding_protein,_cytoplasmic_cochaperone_1,chr19:55773599-55791749:-,GRK5->G_protein-coupled_receptor_kinase_5,chr10:120967101-121215131:+	KYSE150_OESOPHAGUS	1	1	0.039	TRUE	1	39	0	134	39	FALSE	ACH-000855
KYSE150_OESOPHAGUS	MT-CO3--MT-ATP6	3	0	MT-CO3	1184	chrM:9390:+	MT-ATP6	5451	chrM:9193:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	MT-CO3->chrM:9207-9990:+,mitochondrially_encoded_cytochrome_c_oxidase_III,MT-ATP6->chrM:8527-9207:+,mitochondrially_encoded_ATP_synthase_6	KYSE150_OESOPHAGUS	1	1	0.039	FALSE	189	492	56	216	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	NRIP1--AF127936.7	1	8	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	NO	8	0	0.53	1	0.013	0.1041	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	KYSE150_OESOPHAGUS	0.53	1	0.1171	FALSE	164	806	69	479	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	SLC1A5--MT-ND4L	3	0	SLC1A5	6480	chr19:47282018:-	MT-ND4L	12875	chrM:10482:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.039	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	KYSE150_OESOPHAGUS	1	1	0.039	FALSE	0	0	0	189	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	DIP2A--PCNT	2	2	DIP2A	1324	chr21:47879135:+	PCNT	85540	chr21:47855817:+	ONLY_REF_SPLICE	YES	40	63	0.09	0.06	0.026	0.026	GTEx_v2:{count=4;pct=0.05%;dist=Esophagus_-_Mucosa=1,Cells_-_EBV-transformed_lymphocytes=1,Muscle_-_Skeletal=1,Heart_-_Atrial_Appendage=1},LOCAL_REARRANGEMENT:+:[13130],DIP2A->chr21:47878812-47989926:+,disco_interacting_protein_2_homolog_A,PCNT->chr21:47744036-47865682:+,pericentrin	KYSE150_OESOPHAGUS	0.06	0.09	0.052	TRUE	0	0	0	1	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	RP11-624L4.1--RP11-265N7.1	2	2	RP11-624L4.1	2530	chr15:39712745:-	RP11-265N7.1	21493	chr15:39482367:-	ONLY_REF_SPLICE	YES	35	0	0.1	1	0.026	0.026	NEIGHBORS_OVERLAP:-:-:[5871],RP11-624L4.1->chr15:39157523-39719396:-,RP11-265N7.1->chr15:39480639-39486510:-	KYSE150_OESOPHAGUS	0.1	1	0.052	FALSE	0	20	1	20	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	ADIPOR2--WNT5B	2	1	ADIPOR2	2331	chr12:1800379:+	WNT5B	26960	chr12:1740464:+	ONLY_REF_SPLICE	YES	107	5	0.03	0.38	0.026	0.013	LOCAL_REARRANGEMENT:+:[41331],ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+,WNT5B->Wnt_family_member_5B,chr12:1639057-1756409:+	KYSE150_OESOPHAGUS	0.03	0.38	0.039	TRUE	0	1	0	2	1	FALSE	ACH-000855
KYSE150_OESOPHAGUS	CMTM8--CMTM7	2	1	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	YES	57	0	0.05	1	0.026	0.013	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	KYSE150_OESOPHAGUS	0.05	1	0.039	FALSE	118	557	29	88	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	DCUN1D1--CALM1	2	0	DCUN1D1	4385	chr3:182683467:-	CALM1	21812	chr14:90865335:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	DCUN1D1->chr3:182655862-182703741:-,defective_in_cullin_neddylation_1_domain_containing_1,CALM1->calmodulin_1_(phosphorylase_kinase,_delta),chr14:90862846-90874605:+	KYSE150_OESOPHAGUS	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	EARS2--ZSWIM7	2	0	EARS2	13175	chr16:23536565:-	ZSWIM7	27477	chr17:15880406:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	EARS2->chr16:23533335-23569052:-,glutamyl-tRNA_synthetase_2,_mitochondrial,ZSWIM7->chr17:15879874-15903031:-,zinc_finger_SWIM-type_containing_7	KYSE150_OESOPHAGUS	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	MTA1--PACS2	2	0	MTA1	1242	chr14:105886400:+	PACS2	39472	chr14:105851216:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	YOSHIHARA_TCGA_num_samples[BRCA:1|HNSC:1|LUSC:1],{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[21675],MTA1->Oncogene{Bushman},chr14:105886159-105937066:+,metastasis_associated_1,PACS2->chr14:105766900-105864484:+,phosphofurin_acidic_cluster_sorting_protein_2	KYSE150_OESOPHAGUS	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	RP11-108K3.1--GLDN	1	4	RP11-108K3.1	1194	chr15:51329878:+	GLDN	10546	chr15:51675633:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.013	0.0521	NEIGHBORS[47717],RP11-108K3.1->chr15:51329685-51586109:+,GLDN->chr15:51633826-51700210:+,gliomedin	KYSE150_OESOPHAGUS	1	1	0.0651	FALSE	1	20	0	46	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	SENP2--RRP15	2	0	SENP2	3765	chr3:185307957:+	RRP15	31449	chr1:218504290:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	SENP2->SUMO1/sentrin/SMT3_specific_peptidase_2,chr3:185300284-185351339:+,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	KYSE150_OESOPHAGUS	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	TRIM37--SKA2	2	0	TRIM37	12705	chr17:57148184:-	SKA2	40039	chr17:57196856:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	GTEx_v2:{count=1;pct=0.01%;dist=Brain_-_Nucleus_accumbens_(basal_ganglia)=1},LOCAL_REARRANGEMENT:-:[3030],TRIM37->Oncogene{Bushman},chr17:57059999-57184282:-,tripartite_motif_containing_37,SKA2->chr17:57187312-57232630:-,spindle_and_kinetochore_associated_complex_subunit_2	KYSE150_OESOPHAGUS	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	TSGA10--LYG1	2	0	TSGA10	3904	chr2:99757891:-	LYG1	34683	chr2:99912165:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	TSGA10->chr2:99613724-99771427:-,testis_specific_10,LYG1->chr2:99900701-99921205:-,lysozyme_g1	KYSE150_OESOPHAGUS	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	TSGA10--LYG1	2	0	TSGA10	4249	chr2:99757546:-	LYG1	34683	chr2:99912165:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.026	0	TSGA10->chr2:99613724-99771427:-,testis_specific_10,LYG1->chr2:99900701-99921205:-,lysozyme_g1	KYSE150_OESOPHAGUS	1	1	0.026	TRUE	0	0	0	1	0	TRUE	ACH-000855
KYSE150_OESOPHAGUS	RP11-275N1.1--NEBL	1	3	RP11-275N1.1	2205	chr10:21658896:-	NEBL	9863	chr10:21461406:-	ONLY_REF_SPLICE	YES	2	10	0.67	0.29	0.013	0.039	RP11-275N1.1->chr10:21629162-21661879:-,NEBL->chr10:21068902-21463116:-,nebulette	KYSE150_OESOPHAGUS	0.29	0.67	0.052	TRUE	0	2	0	25	2	FALSE	ACH-000855
KYSE150_OESOPHAGUS	AC002066.1--AC073130.1	1	1	AC002066.1	1112	chr7:116139408:-	AC073130.1	14723	chr7:115917486:-	ONLY_REF_SPLICE	YES	5	0	0.29	1	0.013	0.013	NEIGHBORS_OVERLAP:-:-:[11128],AC002066.1->chr7:115878314-116139519:-,AC073130.1->chr7:115915660-115926788:-	KYSE150_OESOPHAGUS	0.29	1	0.026	FALSE	0	3	0	33	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	ADIPOR2--WNT5B	1	1	ADIPOR2	2309	chr12:1800357:+	WNT5B	26960	chr12:1740464:+	ONLY_REF_SPLICE	YES	93	5	0.02	0.29	0.013	0.013	LOCAL_REARRANGEMENT:+:[41331],ADIPOR2->adiponectin_receptor_2,chr12:1797740-1897844:+,WNT5B->Wnt_family_member_5B,chr12:1639057-1756409:+	KYSE150_OESOPHAGUS	0.02	0.29	0.026	TRUE	0	1	0	2	1	FALSE	ACH-000855
KYSE150_OESOPHAGUS	ANKRD10--ING1	1	1	ANKRD10	1345	chr13:111567072:-	ING1	22718	chr13:111371576:+	ONLY_REF_SPLICE	YES	197	137	0.01	0.01	0.013	0.013	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Colon=[count:1=pct:0.5],Blood=[count:1=pct:0.6]},GTEx_v2:{count=2;pct=0.02%;dist=Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1},ANKRD10->ankyrin_repeat_domain_10,chr13:111530887-111567416:-,ING1->chr13:111365083-111373421:+,inhibitor_of_growth_family_member_1	KYSE150_OESOPHAGUS	0.01	0.01	0.026	FALSE	2	0	0	4	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	DENND1A--PSMB7	1	1	DENND1A	16714	chr9:126319849:-	PSMB7	52173	chr9:127119194:-	ONLY_REF_SPLICE	YES	51	915	0.04	0	0.013	0.013	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Artery_-_Tibial=1,Heart_-_Atrial_Appendage=1},DENND1A->DENN_domain_containing_1A,chr9:126141933-126692431:-,PSMB7->chr9:127115745-127177723:-,proteasome_subunit_beta_7	KYSE150_OESOPHAGUS	0	0.04	0.026	FALSE	0	2	0	1	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	KPNB1--NPEPPS	1	1	KPNB1	1969	chr17:45727810:+	NPEPPS	50549	chr17:45677042:+	ONLY_REF_SPLICE	YES	206	123	0.01	0.02	0.013	0.013	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},{Klijn_CCL:Head-Neck=1},LOCAL_REARRANGEMENT:+:[26200],KPNB1->chr17:45726842-45762871:+,karyopherin_subunit_beta_1,NPEPPS->aminopeptidase_puromycin_sensitive,chr17:45600308-45700642:+	KYSE150_OESOPHAGUS	0.01	0.02	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	LYPLAL1--RRP15	1	1	LYPLAL1	3277	chr1:219352588:+	RRP15	17458	chr1:218504290:+	ONLY_REF_SPLICE	YES	474	370	0	0.01	0.013	0.013	GTEx&tcga_normals:1/3694=0.03%,LYPLAL1->chr1:219347186-219386207:+,lysophospholipase_like_1,RRP15->chr1:218458629-218511325:+,ribosomal_RNA_processing_15_homolog	KYSE150_OESOPHAGUS	0	0.01	0.026	FALSE	0	12	0	13	2	FALSE	ACH-000855
KYSE150_OESOPHAGUS	RPL12--NAP1L1	1	1	RPL12	3125	chr9:130211560:-	NAP1L1	22164	chr12:76444433:-	ONLY_REF_SPLICE	YES	4776	1149	0	0	0.013	0.013	RPL12->chr9:130209953-130213684:-,ribosomal_protein_L12,NAP1L1->chr12:76438670-76478813:-,nucleosome_assembly_protein_1_like_1	KYSE150_OESOPHAGUS	0	0	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	RPS6KC1--ATF3	1	1	RPS6KC1	8110	chr1:213303232:+	ATF3	28092	chr1:212788360:+	ONLY_REF_SPLICE	NO	186	2520	0.01	0	0.013	0.013	RPS6KC1->chr1:213224589-213448116:+,ribosomal_protein_S6_kinase_C1,ATF3->Oncogene{Bushman},activating_transcription_factor_3,chr1:212738676-212794119:+	KYSE150_OESOPHAGUS	0	0.01	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	TANC1--ESYT2	1	1	TANC1	3335	chr2:159922483:+	ESYT2	62052	chr7:158529870:-	ONLY_REF_SPLICE	YES	78	267	0.03	0.01	0.013	0.013	GTEx&tcga_normals:1/3694=0.03%,TANC1->chr2:159825146-160089170:+,tetratricopeptide_repeat,_ankyrin_repeat_and_coiled-coil_containing_1,ESYT2->chr7:158523686-158622944:-,extended_synaptotagmin_protein_2	KYSE150_OESOPHAGUS	0.01	0.03	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	VPS37B--UBC	1	1	VPS37B	1493	chr12:123380499:-	UBC	16696	chr12:125398320:-	ONLY_REF_SPLICE	YES	190	285	0.01	0.01	0.013	0.013	GTEx_FI:{Whole_Blood=[count:3=pct:2.3],Blood=[count:2=pct:1.1]},GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},VPS37B->VPS37B,_ESCRT-I_subunit,chr12:123349882-123380991:-,UBC->chr12:125396150-125401914:-,ubiquitin_C	KYSE150_OESOPHAGUS	0.01	0.01	0.026	FALSE	4	0	1	2	0	FALSE	ACH-000855
KYSE150_OESOPHAGUS	ZFYVE21--KLC1	1	1	ZFYVE21	1250	chr14:104182316:+	KLC1	30435	chr14:104153418:+	ONLY_REF_SPLICE	YES	230	150	0.01	0.01	0.013	0.013	GTEx_FI:{Esophagus=[count:4=pct:1.0],Brain=[count:3=pct:0.5],Nerve=[count:1=pct:0.6],Blood_Vessel=[count:1=pct:0.3],Colon=[count:1=pct:0.5],Pituitary=[count:1=pct:1.9],Breast=[count:1=pct:0.9]},GTEx_v2:{count=1;pct=0.01%;dist=Breast_-_Mammary_Tissue=1},LOCAL_REARRANGEMENT:+:[14179],ZFYVE21->chr14:104182067-104200005:+,zinc_finger_FYVE-type_containing_21,KLC1->chr14:104028233-104167888:+,kinesin_light_chain_1	KYSE150_OESOPHAGUS	0.01	0.01	0.026	FALSE	0	0	0	1	0	FALSE	ACH-000855
NUGC3_STOMACH	FAM129B--METRNL	610	343	FAM129B	8172	chr9:130285958:-	METRNL	23759	chr17:81050912:+	ONLY_REF_SPLICE	YES	320	28	0.75	0.97	6.1341	3.4492	{Klijn_CCL:Stomach=1},FAM129B->chr9:130267618-130341268:-,family_with_sequence_similarity_129_member_B,METRNL->chr17:81037567-81052864:+,meteorin,_glial_cell_differentiation_regulator-like	NUGC3_STOMACH	0.75	0.97	9.5833	TRUE	0	0	0	2	0	TRUE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	617	182	MT-ND4	1180	chrM:10939:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	41	0	0.95	1	6.2045	1.8302	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.95	1	8.0347	FALSE	344	826	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	CPT1A--AP000867.1	328	137	CPT1A	9234	chr11:68571468:-	AP000867.1	38418	chr11:71293203:-	ONLY_REF_SPLICE	YES	95	0	0.83	1	3.2984	1.3777	CPT1A->carnitine_palmitoyltransferase_1A,chr11:68522088-68611878:-,AP000867.1->chr11:71292956-71318487:-	NUGC3_STOMACH	0.83	1	4.6761	TRUE	0	0	0	2	0	TRUE	ACH-000911
NUGC3_STOMACH	CDC42--RP11-431K24.1	83	2	CDC42	1116	chr1:22379235:+	RP11-431K24.1	16705	chr1:8181534:+	ONLY_REF_SPLICE	YES	3	0	0.97	1	0.8346	0.0201	CDC42->Oncogene{Bushman},cell_division_cycle_42,chr1:22379120-22419437:+,RP11-431K24.1->chr1:8086798-8182762:+	NUGC3_STOMACH	0.97	1	0.8547	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	MAML3--CLGN	70	27	MAML3	2325	chr4:141074014:-	CLGN	17882	chr4:141334241:-	ONLY_REF_SPLICE	YES	2	6	0.98	0.94	0.7039	0.2715	MAML3->chr4:140637907-141075338:-,mastermind_like_transcriptional_coactivator_3,CLGN->calmegin,chr4:141309609-141349122:-	NUGC3_STOMACH	0.94	0.98	0.9754	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	MT-ND6--MT-TE	68	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6838	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC3_STOMACH	1	1	0.6838	FALSE	499	1288	110	792	0	FALSE	ACH-000911
NUGC3_STOMACH	AC104389.28--HBE1	50	40	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	28	0	0.76	1	0.5028	0.4022	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NUGC3_STOMACH	0.76	1	0.905	TRUE	0	48	0	65	48	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	13	188	MT-ND4	1741	chrM:11500:+	MT-ND4L	5454	chrM:10545:+	INCL_NON_REF_SPLICE	YES	6723	0	0.03	1	0.1307	1.8905	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.03	1	2.0212	FALSE	344	827	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	AP003900.6--AC008132.1	53	14	AP003900.6	1122	chr21:11169841:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	1	0	0.99	1	0.533	0.1408	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NUGC3_STOMACH	0.99	1	0.6738	TRUE	0	0	0	25	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	9	177	MT-ND4	1192	chrM:10951:+	MT-ND4L	5535	chrM:10626:+	INCL_NON_REF_SPLICE	NO	42	0	0.82	1	0.0905	1.7799	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.82	1	1.8704	FALSE	344	826	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	7	179	MT-ND4	1113	chrM:10872:+	MT-ND4L	5508	chrM:10599:+	INCL_NON_REF_SPLICE	YES	23	0	0.89	1	0.0704	1.8	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.89	1	1.8704	FALSE	344	826	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-TA--MT-TC	50	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.5028	0.0503	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUGC3_STOMACH	1	1	0.5531	FALSE	462	80	0	856	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	3	190	MT-ND4	1793	chrM:11552:+	MT-ND4L	5383	chrM:10474:+	INCL_NON_REF_SPLICE	YES	9687	0	0.02	1	0.0302	1.9106	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.02	1	1.9408	FALSE	344	827	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	5	182	MT-ND4	1196	chrM:10955:+	MT-ND4L	5485	chrM:10576:+	INCL_NON_REF_SPLICE	YES	42	0	0.82	1	0.0503	1.8302	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.82	1	1.8805	FALSE	344	826	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	3	183	MT-ND4	1219	chrM:10978:+	MT-ND4L	5382	chrM:10473:+	INCL_NON_REF_SPLICE	YES	49	0	0.79	1	0.0302	1.8402	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.79	1	1.8704	FALSE	344	827	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	3	181	MT-ND4	1151	chrM:10910:+	MT-ND4L	5495	chrM:10586:+	INCL_NON_REF_SPLICE	YES	29	0	0.86	1	0.0302	1.8201	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.86	1	1.8503	FALSE	344	826	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	TIMM23B--LINC00843	43	16	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4324	0.1609	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	NUGC3_STOMACH	1	1	0.5933	TRUE	508	994	45	981	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	4	160	MT-ND4	1092	chrM:10851:+	MT-ND4L	5537	chrM:10628:+	INCL_NON_REF_SPLICE	YES	20	0	0.89	1	0.0402	1.609	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.89	1	1.6492	FALSE	344	826	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	41	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5478	chrM:8465:+	INCL_NON_REF_SPLICE	YES	15634	2	0	0.96	0.4123	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.96	0.4324	FALSE	230	193	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	8	123	MT-ND4	1073	chrM:10832:+	MT-ND4L	5524	chrM:10615:+	INCL_NON_REF_SPLICE	YES	15	0	0.9	1	0.0804	1.2369	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.9	1	1.3173	FALSE	344	821	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	5	131	MT-ND4	1112	chrM:10871:+	MT-ND4L	5605	chrM:10696:+	INCL_NON_REF_SPLICE	YES	23	0	0.86	1	0.0503	1.3173	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.86	1	1.3676	FALSE	344	826	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	SLC12A2--CTC-228N24.1	34	15	SLC12A2	1945	chr5:127420402:+	CTC-228N24.1	41904	chr5:127089960:+	ONLY_REF_SPLICE	YES	13	0	0.79	1	0.3419	0.1508	SLC12A2->chr5:127419458-127525380:+,solute_carrier_family_12_member_2,CTC-228N24.1->chr5:127039082-127277326:+	NUGC3_STOMACH	0.79	1	0.4927	TRUE	0	2	0	1	1	TRUE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	24	46	MT-ND4	2080	chrM:11839:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	NO	17038	0	0	1	0.2413	0.4626	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0	1	0.7039	FALSE	328	800	43	304	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	5	120	MT-ND4	1308	chrM:11067:+	MT-ND4L	5618	chrM:10709:+	INCL_NON_REF_SPLICE	YES	123	0	0.5	1	0.0503	1.2067	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.5	1	1.257	FALSE	344	827	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND6--MT-TE	32	11	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	7	0	0.86	1	0.3218	0.1106	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC3_STOMACH	0.86	1	0.4324	FALSE	499	1288	110	792	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND3--MT-ATP8	33	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3318	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	1	1	0.3318	FALSE	351	233	23	137	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND6--MT-TE	33	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3318	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC3_STOMACH	1	1	0.3318	FALSE	499	1288	110	792	0	FALSE	ACH-000911
NUGC3_STOMACH	ZNF654--HMGB2	31	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3117	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	NUGC3_STOMACH	1	1	0.3117	TRUE	0	0	0	518	0	FALSE	ACH-000911
NUGC3_STOMACH	CHD7--C8orf34	28	10	CHD7	6284	chr8:61693989:+	C8orf34	46838	chr8:69351734:+	ONLY_REF_SPLICE	YES	4	0	0.9	1	0.2816	0.1006	CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7,C8orf34->chr8:69242957-69731257:+,chromosome_8_open_reading_frame_34	NUGC3_STOMACH	0.9	1	0.3822	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	27	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15603	6	0	0.83	0.2715	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.83	0.2916	FALSE	230	198	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	5	90	MT-ND4	1144	chrM:10903:+	MT-ND4L	5628	chrM:10719:+	INCL_NON_REF_SPLICE	YES	26	0	0.79	1	0.0503	0.905	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.79	1	0.9553	FALSE	344	826	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	3	89	MT-ND4	1756	chrM:11515:+	MT-ND4L	5630	chrM:10721:+	INCL_NON_REF_SPLICE	YES	7379	0	0.01	1	0.0302	0.895	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.01	1	0.9252	FALSE	344	827	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	TIMM23--RP11-464F9.1	25	1	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	240	1	0.1	0.96	0.2514	0.0101	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	NUGC3_STOMACH	0.1	0.96	0.2615	TRUE	519	3926	326	965	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	16	27	MT-ND4	1828	chrM:11587:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	12138	0	0	1	0.1609	0.2715	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0	1	0.4324	FALSE	344	827	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	21	6	MT-ND4	1773	chrM:11532:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	20458	6	0	0.82	0.2112	0.0603	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.82	0.2715	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	17	19	MT-ND4	2009	chrM:11768:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20253	44	0	0.45	0.171	0.1911	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.45	0.3621	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	19	7	MT-ND4	1391	chrM:11150:+	MT-ATP8	5437	chrM:8424:+	INCL_NON_REF_SPLICE	NO	21417	0	0	1	0.1911	0.0704	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.2615	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	19	7	MT-ND4	1487	chrM:11246:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	20087	0	0	1	0.1911	0.0704	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.2615	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	AC104389.28--HBE1	10	41	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	YES	28	0	0.65	1	0.1006	0.4123	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NUGC3_STOMACH	0.65	1	0.5129	TRUE	0	35	0	55	35	FALSE	ACH-000911
NUGC3_STOMACH	C15orf57--CBX3	15	8	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	20	27	0.53	0.46	0.1508	0.0804	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NUGC3_STOMACH	0.46	0.53	0.2312	TRUE	267	562	48	632	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND3--MT-ATP8	17	0	MT-ND3	1047	chrM:10105:+	MT-ATP8	4421	chrM:8440:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.171	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	1	1	0.171	FALSE	351	233	23	137	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	12	20	MT-ND4	1952	chrM:11711:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	21784	0	0	1	0.1207	0.2011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.3218	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	AP000525.9--LA16c-60G3.6	15	2	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	15	0	0.53	1	0.1508	0.0201	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	NUGC3_STOMACH	0.53	1	0.1709	TRUE	0	42	0	133	42	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	13	10	MT-ND4	1828	chrM:11587:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20106	44	0	0.34	0.1307	0.1006	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.34	0.2313	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	15	2	MT-ND4	1213	chrM:10972:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15795	44	0	0.28	0.1508	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.28	0.1709	FALSE	230	198	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	4	44	MT-ND4	1180	chrM:10939:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	41	0	0.54	1	0.0402	0.4425	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.54	1	0.4827	FALSE	344	826	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	14	3	MT-ND4	1281	chrM:11040:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	18484	6	0	0.74	0.1408	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.74	0.171	FALSE	231	205	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	10	19	MT-ND4	2009	chrM:11768:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	YES	20253	168	0	0.15	0.1006	0.1911	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.15	0.2917	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	5	39	MT-ND4	1024	chrM:10783:+	MT-ND4L	5502	chrM:10593:+	INCL_NON_REF_SPLICE	YES	3	0	0.94	1	0.0503	0.3922	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.94	1	0.4425	FALSE	344	821	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	8	27	MT-ND4	1477	chrM:11236:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	639	0	0.05	1	0.0804	0.2715	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.05	1	0.3519	FALSE	344	827	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	12	9	MT-ND4	1756	chrM:11515:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	YES	19635	0	0	1	0.1207	0.0905	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.2112	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	8	25	MT-ND4	1192	chrM:10951:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	42	0	0.44	1	0.0804	0.2514	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.44	1	0.3318	FALSE	344	826	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	3	45	MT-ND4	1426	chrM:11185:+	MT-ND4L	5655	chrM:10746:+	INCL_NON_REF_SPLICE	YES	375	0	0.11	1	0.0302	0.4525	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.11	1	0.4827	FALSE	344	827	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	11	12	MT-ND4	1794	chrM:11553:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	20558	0	0	1	0.1106	0.1207	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.2313	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	NPM1P24--SET	14	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1408	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	NUGC3_STOMACH	1	1	0.1408	TRUE	0	0	0	434	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	7	27	MT-ND4	2050	chrM:11809:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	18823	0	0	1	0.0704	0.2715	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0	1	0.3419	FALSE	343	822	44	305	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	7	27	MT-ND4	1216	chrM:10975:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	49	0	0.41	1	0.0704	0.2715	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.41	1	0.3419	FALSE	344	826	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	13	2	MT-ND4	1112	chrM:10871:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	9550	0	0	1	0.1307	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.1508	FALSE	230	193	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	8	22	MT-ND4	1966	chrM:11725:+	MT-ATP8	5440	chrM:8427:+	INCL_NON_REF_SPLICE	YES	20797	0	0	1	0.0804	0.2212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.3016	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	8	22	MT-ND4	2250	chrM:12009:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	3352	44	0.01	0.41	0.0804	0.2212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0.01	0.41	0.3016	FALSE	216	209	16	281	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	10	12	MT-ND4	1781	chrM:11540:+	MT-ATP8	5428	chrM:8415:+	INCL_NON_REF_SPLICE	YES	20562	0	0	1	0.1006	0.1207	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.2213	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	SPG11--MRPL52	13	0	SPG11	14989	chr15:44912896:-	MRPL52	54932	chr14:23304077:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1307	0	GTEx_FI:{Brain=[count:17=pct:2.6],Thyroid=[count:5=pct:2.8],Esophagus=[count:4=pct:1.0],Adipose_Tissue=[count:3=pct:1.0],Prostate=[count:3=pct:4.9],Pituitary=[count:3=pct:5.8],Spleen=[count:2=pct:1.8],Vagina=[count:2=pct:3.6],Colon=[count:2=pct:1.0],Blood_Vessel=[count:1=pct:0.3],Skin=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Testis=[count:1=pct:1.0]},SPG11->chr15:44854894-44955876:-,spastic_paraplegia_11_(autosomal_recessive),MRPL52->chr14:23299088-23304246:+,mitochondrial_ribosomal_protein_L52	NUGC3_STOMACH	1	1	0.1307	TRUE	38	11	0	19	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND6--MT-TE	9	15	MT-ND6	1188	chrM:14486:-	MT-TE	4548	chrM:14720:-	INCL_NON_REF_SPLICE	YES	7	0	0.77	1	0.0905	0.1508	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC3_STOMACH	0.77	1	0.2413	FALSE	499	1288	110	792	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-TA--MT-TC	11	6	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1106	0.0603	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUGC3_STOMACH	1	1	0.1709	FALSE	462	80	0	856	0	FALSE	ACH-000911
NUGC3_STOMACH	HSP90AB1--MT-RNR2	12	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3300	0	0	1	0.1207	0.0101	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NUGC3_STOMACH	0	1	0.1308	FALSE	13	9	0	364	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND6--MT-TE	10	9	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1006	0.0905	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC3_STOMACH	0.95	1	0.1911	FALSE	499	1288	110	792	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND6--MT-TE	10	8	MT-ND6	1040	chrM:14634:-	MT-TE	4513	chrM:14755:-	INCL_NON_REF_SPLICE	YES	1	0	0.95	1	0.1006	0.0804	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC3_STOMACH	0.95	1	0.181	FALSE	499	1288	110	792	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	10	7	MT-ND4	1480	chrM:11239:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	20033	0	0	1	0.1006	0.0704	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.171	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	6	23	MT-ND4	1959	chrM:11718:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	21386	0	0	1	0.0603	0.2313	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.2916	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	CTD-2206N4.4--LRRC37A11P	11	2	CTD-2206N4.4	4235	chr17:37219799:+	LRRC37A11P	28174	chr17:37209118:+	ONLY_REF_SPLICE	YES	4	0	0.76	1	0.1106	0.0201	LOCAL_REARRANGEMENT:+:[3814],CTD-2206N4.4->chr17:37213272-37269443:+,LRRC37A11P->chr17:37183530-37209458:+,leucine-rich_repeat_containing_37_member_A11,_pseudogene	NUGC3_STOMACH	0.76	1	0.1307	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	9	10	MT-ND4	1914	chrM:11673:+	MT-ATP8	5499	chrM:8486:+	INCL_NON_REF_SPLICE	YES	21431	805	0	0.02	0.0905	0.1006	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.02	0.1911	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	4	30	MT-ND4	2343	chrM:12102:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0.3017	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	1	1	0.3419	FALSE	209	205	15	279	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	4	29	MT-ND4	2282	chrM:12041:+	MT-ATP8	5441	chrM:8428:+	INCL_NON_REF_SPLICE	NO	67	0	0.33	1	0.0402	0.2916	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0.33	1	0.3318	FALSE	213	207	15	279	0	FALSE	ACH-000911
NUGC3_STOMACH	AP003900.6--AC008132.1	9	8	AP003900.6	1122	chr21:11169841:+	AC008132.1	10621	chr22:18727043:+	ONLY_REF_SPLICE	YES	1	0	0.94	1	0.0905	0.0804	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NUGC3_STOMACH	0.94	1	0.1709	TRUE	0	0	0	16	0	TRUE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	6	20	MT-ND4	1948	chrM:11707:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	21835	0	0	1	0.0603	0.2011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.2614	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	6	19	MT-ND4	1903	chrM:11662:+	MT-ATP8	5442	chrM:8429:+	INCL_NON_REF_SPLICE	YES	21495	0	0	1	0.0603	0.1911	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.2514	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	4	27	MT-ND4	1773	chrM:11532:+	MT-ND4L	5661	chrM:10752:+	INCL_NON_REF_SPLICE	YES	8485	0	0	1	0.0402	0.2715	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0	1	0.3117	FALSE	344	827	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	10	2	MT-ND4	1205	chrM:10964:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	NO	15509	6	0	0.67	0.1006	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.67	0.1207	FALSE	230	193	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	RP11-123O10.4--GRIP1	10	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1006	0.0201	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NUGC3_STOMACH	1	1	0.1207	FALSE	416	2512	207	587	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	5	20	MT-ND4	1943	chrM:11702:+	MT-ATP8	5410	chrM:8397:+	INCL_NON_REF_SPLICE	NO	21378	0	0	1	0.0503	0.2011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.2514	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	CTD-2008L17.1--RP11-456O19.2	9	3	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	9160	chr18:53717311:+	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.0905	0.0302	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NUGC3_STOMACH	0.8	1	0.1207	FALSE	20	187	4	79	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	9	3	MT-ND4	1317	chrM:11076:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	20738	1526	0	0.01	0.0905	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.01	0.1207	FALSE	231	205	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	6	15	MT-ND4	2179	chrM:11938:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	YES	10208	507	0	0.04	0.0603	0.1508	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.04	0.2111	FALSE	231	215	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND6--MT-TE	6	15	MT-ND6	1214	chrM:14460:-	MT-TE	4547	chrM:14721:-	INCL_NON_REF_SPLICE	YES	5	0	0.81	1	0.0603	0.1508	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC3_STOMACH	0.81	1	0.2111	FALSE	499	1288	110	792	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	26	MT-ND4	2176	chrM:11935:+	MT-ATP8	5451	chrM:8438:+	INCL_NON_REF_SPLICE	YES	10368	0	0	1	0.0302	0.2615	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.2917	FALSE	231	215	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	8	5	MT-ND4	1767	chrM:11526:+	MT-ATP8	5501	chrM:8488:+	INCL_NON_REF_SPLICE	YES	20295	946	0	0.01	0.0804	0.0503	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.01	0.1307	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	3	25	MT-ND4	1058	chrM:10817:+	MT-ND4L	5625	chrM:10716:+	INCL_NON_REF_SPLICE	NO	11	0	0.72	1	0.0302	0.2514	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.72	1	0.2816	FALSE	344	821	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	4	20	MT-ND4	1912	chrM:11671:+	MT-ATP8	5418	chrM:8405:+	INCL_NON_REF_SPLICE	YES	21370	0	0	1	0.0402	0.2011	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.2413	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	7	7	MT-ND4	1470	chrM:11229:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	19959	0	0	1	0.0704	0.0704	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.1408	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	8	2	MT-ND4	1209	chrM:10968:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	15634	6	0	0.62	0.0804	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.62	0.1005	FALSE	230	193	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	22	MT-ND4	1974	chrM:11733:+	MT-ATP8	5448	chrM:8435:+	INCL_NON_REF_SPLICE	YES	20692	0	0	1	0.0302	0.2212	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.2514	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	7	6	MT-ND4	1806	chrM:11565:+	MT-ATP8	5514	chrM:8501:+	INCL_NON_REF_SPLICE	YES	20679	1526	0	0.01	0.0704	0.0603	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.01	0.1307	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	5	14	MT-ND4	1289	chrM:11048:+	MT-ND4L	5673	chrM:10764:+	INCL_NON_REF_SPLICE	YES	113	0	0.14	1	0.0503	0.1408	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.14	1	0.1911	FALSE	344	827	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	C15orf57--CBX3	7	4	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	20	29	0.35	0.28	0.0704	0.0402	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	NUGC3_STOMACH	0.28	0.35	0.1106	TRUE	267	562	48	632	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	6	8	MT-ND4	1506	chrM:11265:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	20501	0	0	1	0.0603	0.0804	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.1407	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	5	12	MT-ND4	1813	chrM:11572:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	20583	0	0	1	0.0503	0.1207	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.171	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	6	8	MT-ND4	1734	chrM:11493:+	MT-ATP8	5429	chrM:8416:+	INCL_NON_REF_SPLICE	YES	19465	0	0	1	0.0603	0.0804	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.1407	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	7	3	MT-ND4	1209	chrM:10968:+	MT-ATP8	5450	chrM:8437:+	INCL_NON_REF_SPLICE	NO	15634	0	0	1	0.0704	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.1006	FALSE	230	193	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	4	14	MT-ND4	1289	chrM:11048:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	113	0	0.14	1	0.0402	0.1408	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.14	1	0.181	FALSE	344	827	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	7	1	MT-ND4	1258	chrM:11017:+	MT-ATP8	5532	chrM:8519:+	INCL_NON_REF_SPLICE	YES	17048	1856	0	0	0.0704	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0	0.0805	FALSE	231	204	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	7	1	MT-ND4	1144	chrM:10903:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	11481	44	0	0.15	0.0704	0.0101	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.15	0.0805	FALSE	230	193	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	ANP32B--SEPT7	7	0	ANP32B	10336	chr9:100777729:+	SEPT7	24544	chr7:35922140:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0704	0	ANP32B->Oncogene{Bushman},acidic_nuclear_phosphoprotein_32_family_member_B,chr9:100745643-100778225:+,SEPT7->chr7:35840542-35944917:+,septin_7	NUGC3_STOMACH	1	1	0.0704	TRUE	1	1	0	18	1	TRUE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	4	12	MT-ND4	1788	chrM:11547:+	MT-ATP8	5435	chrM:8422:+	INCL_NON_REF_SPLICE	YES	20255	0	0	1	0.0402	0.1207	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.1609	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	5	8	MT-ND4	1762	chrM:11521:+	MT-ATP8	5465	chrM:8452:+	INCL_NON_REF_SPLICE	YES	19988	0	0	1	0.0503	0.0804	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.1307	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	TPT1--H19	7	0	TPT1	1319	chr13:45915187:-	H19	11854	chr11:2017003:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0704	0	TPT1->chr13:45911008-45915505:-,tumor_protein,_translationally-controlled_1,H19->H19,_imprinted_maternally_expressed_transcript_(non-protein_coding),chr11:2016406-2022700:-	NUGC3_STOMACH	1	1	0.0704	TRUE	0	0	0	4	0	TRUE	ACH-000911
NUGC3_STOMACH	HINT3--NCOA7	6	3	HINT3	1398	chr6:126278324:+	NCOA7	19902	chr6:126196035:+	ONLY_REF_SPLICE	YES	135	24	0.06	0.27	0.0603	0.0302	{Klijn_CCL:Lung=1},LOCAL_REARRANGEMENT:+:[25661],HINT3->chr6:126277927-126301387:+,histidine_triad_nucleotide_binding_protein_3,NCOA7->chr6:126102307-126252266:+,nuclear_receptor_coactivator_7	NUGC3_STOMACH	0.06	0.27	0.0905	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	14	MT-ND4	1803	chrM:11562:+	MT-ATP8	5411	chrM:8398:+	INCL_NON_REF_SPLICE	YES	20483	0	0	1	0.0302	0.1408	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.171	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	3	14	MT-ND4	1201	chrM:10960:+	MT-ND4L	5672	chrM:10763:+	INCL_NON_REF_SPLICE	YES	50	0	0.25	1	0.0302	0.1408	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.25	1	0.171	FALSE	344	826	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	HSP90AB1--MT-RNR2	6	1	HSP90AB1	7249	chr6:44221072:+	MT-RNR2	10815	chrM:1688:+	INCL_NON_REF_SPLICE	YES	3293	0	0	1	0.0603	0.0101	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	NUGC3_STOMACH	0	1	0.0704	FALSE	13	9	0	364	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	13	MT-ND4	1903	chrM:11662:+	MT-ATP8	5489	chrM:8476:+	INCL_NON_REF_SPLICE	NO	21495	168	0	0.09	0.0302	0.1307	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.09	0.1609	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	6	1	MT-ND4	1046	chrM:10805:+	MT-ND4L	5640	chrM:10731:+	INCL_NON_REF_SPLICE	YES	10	0	0.41	1	0.0603	0.0101	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.41	1	0.0704	FALSE	344	821	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	NRIP1--AF127936.7	6	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	2	4	0.78	0.64	0.0603	0.0101	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NUGC3_STOMACH	0.64	0.78	0.0704	FALSE	292	1546	117	613	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	5	4	MT-ND4	1467	chrM:11226:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20639	44	0	0.17	0.0503	0.0402	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.17	0.0905	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	4	8	MT-ND4	1923	chrM:11682:+	MT-ATP8	5536	chrM:8523:+	INCL_NON_REF_SPLICE	YES	21236	1805	0	0.01	0.0402	0.0804	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.01	0.1206	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	4	7	MT-ND4	1455	chrM:11214:+	MT-ATP8	5447	chrM:8434:+	INCL_NON_REF_SPLICE	YES	20772	0	0	1	0.0402	0.0704	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.1106	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	11	MT-ND4	1774	chrM:11533:+	MT-ATP8	5417	chrM:8404:+	INCL_NON_REF_SPLICE	NO	20519	0	0	1	0.0302	0.1106	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.1408	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	AP003900.6--AC008132.1	3	10	AP003900.6	3299	chr21:11174002:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	1	0	0.93	1	0.0302	0.1006	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NUGC3_STOMACH	0.93	1	0.1308	TRUE	1	1	0	28	1	FALSE	ACH-000911
NUGC3_STOMACH	AP003900.6--AC008132.1	1	18	AP003900.6	3299	chr21:11174002:+	AC008132.1	9069	chr22:18723545:+	ONLY_REF_SPLICE	YES	1	0	0.95	1	0.0101	0.181	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NUGC3_STOMACH	0.95	1	0.1911	TRUE	1	1	0	28	1	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	4	6	MT-ND4	1301	chrM:11060:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	19999	0	0	1	0.0402	0.0603	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.1005	FALSE	231	205	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	4	6	MT-ND4	1311	chrM:11070:+	MT-ATP8	5427	chrM:8414:+	INCL_NON_REF_SPLICE	YES	20786	0	0	1	0.0402	0.0603	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.1005	FALSE	231	205	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	4	6	MT-ND4	1566	chrM:11325:+	MT-ATP8	5471	chrM:8458:+	INCL_NON_REF_SPLICE	YES	21009	0	0	1	0.0402	0.0603	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.1005	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND6--MT-TE	4	6	MT-ND6	1118	chrM:14556:-	MT-TE	4581	chrM:14687:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0402	0.0603	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC3_STOMACH	0.91	1	0.1005	FALSE	499	1288	110	792	0	FALSE	ACH-000911
NUGC3_STOMACH	NRIP1--AF127936.7	5	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	17	4	0.29	0.64	0.0503	0.0201	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NUGC3_STOMACH	0.29	0.64	0.0704	FALSE	164	806	69	479	0	FALSE	ACH-000911
NUGC3_STOMACH	MFSD10--MT-ND4L	5	0	MFSD10	3408	chr4:2934179:-	MT-ND4L	8301	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	MFSD10->chr4:2932288-2936586:-,major_facilitator_superfamily_domain_containing_10,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	1	1	0.0503	FALSE	0	0	0	2	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	8	MT-ND4	1738	chrM:11497:+	MT-ATP8	5433	chrM:8420:+	INCL_NON_REF_SPLICE	YES	19702	0	0	1	0.0302	0.0804	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.1106	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	4	4	MT-ND4	1546	chrM:11305:+	MT-ATP8	5498	chrM:8485:+	INCL_NON_REF_SPLICE	YES	21763	772	0	0.01	0.0402	0.0402	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.01	0.0804	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	8	MT-ND4	1729	chrM:11488:+	MT-ATP8	5424	chrM:8411:+	INCL_NON_REF_SPLICE	YES	19310	0	0	1	0.0302	0.0804	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.1106	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	5	0	MT-ND4	1779	chrM:11538:+	MT-ATP8	5578	chrM:8565:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	1	1	0.0503	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-TA--MT-TC	5	0	MT-TA	1025	chrM:5631:-	MT-TC	4080	chrM:5816:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUGC3_STOMACH	1	1	0.0503	FALSE	462	80	0	856	0	FALSE	ACH-000911
NUGC3_STOMACH	SLC1A5--MT-ND4L	5	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0503	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	1	1	0.0503	FALSE	0	0	0	189	0	FALSE	ACH-000911
NUGC3_STOMACH	CHD7--C8orf34	4	3	CHD7	4853	chr8:61655656:+	C8orf34	46838	chr8:69351734:+	ONLY_REF_SPLICE	YES	7	0	0.5	1	0.0402	0.0302	CHD7->chr8:61591337-61779465:+,chromodomain_helicase_DNA_binding_protein_7,C8orf34->chr8:69242957-69731257:+,chromosome_8_open_reading_frame_34	NUGC3_STOMACH	0.5	1	0.0704	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	7	MT-ND4	1783	chrM:11542:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	20613	44	0	0.19	0.0302	0.0704	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.19	0.1006	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND6--MT-TE	3	7	MT-ND6	1036	chrM:14638:-	MT-TE	4509	chrM:14759:-	INCL_NON_REF_SPLICE	YES	1	0	0.91	1	0.0302	0.0704	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC3_STOMACH	0.91	1	0.1006	FALSE	499	1288	110	792	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	6	MT-ND4	1523	chrM:11282:+	MT-ATP8	5469	chrM:8456:+	INCL_NON_REF_SPLICE	YES	21881	0	0	1	0.0302	0.0603	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.0905	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	4	2	MT-ND4	1216	chrM:10975:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	15603	44	0	0.12	0.0402	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.12	0.0603	FALSE	230	198	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	6	MT-ND4	1779	chrM:11538:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	20481	6	0	0.6	0.0302	0.0603	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.6	0.0905	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	4	2	MT-ND4	1195	chrM:10954:+	MT-ATP8	5481	chrM:8468:+	INCL_NON_REF_SPLICE	YES	14513	6	0	0.5	0.0402	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.5	0.0603	FALSE	230	193	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-TA--MT-TC	3	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0.0603	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	NUGC3_STOMACH	1	1	0.0905	FALSE	462	80	0	856	0	FALSE	ACH-000911
NUGC3_STOMACH	AP003900.6--AC008132.1	2	9	AP003900.6	1122	chr21:11169841:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	1	0	0.92	1	0.0201	0.0905	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NUGC3_STOMACH	0.92	1	0.1106	TRUE	0	0	0	25	0	FALSE	ACH-000911
NUGC3_STOMACH	AP003900.6--AC008132.1	2	9	AP003900.6	2187	chr21:11172043:+	AC008132.1	9596	chr22:18724072:+	ONLY_REF_SPLICE	YES	2	0	0.85	1	0.0201	0.0905	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NUGC3_STOMACH	0.85	1	0.1106	TRUE	0	0	0	12	0	TRUE	ACH-000911
NUGC3_STOMACH	FN1--MT-ATP8	4	1	FN1	30137	chr2:216251511:-	MT-ATP8	55044	chrM:8474:+	INCL_NON_REF_SPLICE	YES	1616	60	0	0.08	0.0402	0.0101	FN1->Oncogene{Bushman},chr2:216225163-216300895:-,fibronectin_1,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.08	0.0503	FALSE	0	5	0	4	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	5	MT-ND4	1534	chrM:11293:+	MT-ATP8	5485	chrM:8472:+	INCL_NON_REF_SPLICE	YES	22090	44	0	0.15	0.0302	0.0503	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.15	0.0805	FALSE	231	217	16	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	5	MT-ND4	1297	chrM:11056:+	MT-ATP8	5445	chrM:8432:+	INCL_NON_REF_SPLICE	YES	20038	0	0	1	0.0302	0.0503	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.0805	FALSE	231	205	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	NRIP1--AF127936.7	4	1	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	13	4	0.28	0.56	0.0402	0.0101	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	NUGC3_STOMACH	0.28	0.56	0.0503	FALSE	125	705	46	456	0	FALSE	ACH-000911
NUGC3_STOMACH	CTD-2008L17.1--RP11-456O19.2	4	0	CTD-2008L17.1	1405	chr18:53560673:+	RP11-456O19.2	15417	chr18:53763306:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0402	0	NEIGHBORS[18613],CTD-2008L17.1->chr18:53560269-53690753:+,RP11-456O19.2->chr18:53709366-53763550:+	NUGC3_STOMACH	1	1	0.0402	FALSE	33	240	4	98	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND3--MT-ATP8	4	0	MT-ND3	1067	chrM:10125:+	MT-ATP8	4440	chrM:8459:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	1	1	0.0402	FALSE	351	233	23	137	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	4	0	MT-ND4	1010	chrM:10769:+	MT-ATP8	5509	chrM:8496:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	1	1	0.0402	FALSE	230	190	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND6--MT-TE	4	0	MT-ND6	1048	chrM:14626:-	MT-TE	4571	chrM:14697:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0402	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC3_STOMACH	1	1	0.0402	FALSE	499	1288	110	792	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	3	MT-ND4	1231	chrM:10990:+	MT-ATP8	5402	chrM:8389:+	INCL_NON_REF_SPLICE	YES	16272	0	0	1	0.0302	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.0604	FALSE	231	204	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	3	MT-ND4	1220	chrM:10979:+	MT-ATP8	5449	chrM:8436:+	INCL_NON_REF_SPLICE	YES	15814	0	0	1	0.0302	0.0302	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.0604	FALSE	231	204	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	GNGT1--AC002076.10	3	2	GNGT1	1199	chr7:93221083:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	5	0	0.5	1	0.0302	0.0201	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	NUGC3_STOMACH	0.5	1	0.0503	FALSE	0	28	0	37	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	1106	chrM:10865:+	MT-ATP8	5443	chrM:8430:+	INCL_NON_REF_SPLICE	NO	9003	0	0	1	0.0302	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	1	0.0503	FALSE	230	193	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	1239	chrM:10998:+	MT-ATP8	5493	chrM:8480:+	INCL_NON_REF_SPLICE	YES	16492	447	0	0.01	0.0302	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.01	0.0503	FALSE	231	204	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	2	MT-ND4	1222	chrM:10981:+	MT-ATP8	5494	chrM:8481:+	INCL_NON_REF_SPLICE	NO	15993	507	0	0.01	0.0302	0.0201	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	0	0.01	0.0503	FALSE	231	204	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ND4L	3	1	MT-ND4	1051	chrM:10810:+	MT-ND4L	5665	chrM:10756:+	INCL_NON_REF_SPLICE	YES	11	0	0.27	1	0.0302	0.0101	HGNC_GENEFAM,NEIGHBORS_OVERLAP:+:+:[6],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	NUGC3_STOMACH	0.27	1	0.0403	FALSE	344	821	44	306	0	FALSE	ACH-000911
NUGC3_STOMACH	MTAP--CDKN2B-AS1	3	1	MTAP	12211	chr9:21859424:+	CDKN2B-AS1	40771	chr9:22112319:+	ONLY_REF_SPLICE	YES	113	0	0.03	1	0.0302	0.0101	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	NUGC3_STOMACH	0.03	1	0.0403	FALSE	0	5	0	4	0	FALSE	ACH-000911
NUGC3_STOMACH	RP11-115J23.1--RP11-466I1.1	3	1	RP11-115J23.1	4468	chr11:29059363:+	RP11-466I1.1	12826	chr11:29233202:+	ONLY_REF_SPLICE	YES	9	0	0.31	1	0.0302	0.0101	NEIGHBORS[96135],RP11-115J23.1->chr11:28724162-29085368:+,RP11-466I1.1->chr11:29181503-29288281:+	NUGC3_STOMACH	0.31	1	0.0403	FALSE	0	0	0	4	0	FALSE	ACH-000911
NUGC3_STOMACH	FTH1--ACTB	3	0	FTH1	1228	chr11:61734905:-	ACTB	11590	chr7:5570233:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.05%,GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Adipose_-_Visceral_(Omentum)=1},FTH1->chr11:61727190-61735132:-,ferritin,_heavy_polypeptide_1,ACTB->Oncogene{Bushman},actin,_beta,chr7:5566782-5603415:-	NUGC3_STOMACH	1	1	0.0302	TRUE	1	0	0	97	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND3--MT-ATP8	3	0	MT-ND3	1249	chrM:10307:+	MT-ATP8	4449	chrM:8468:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	1	1	0.0302	FALSE	351	233	23	137	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1032	chrM:10791:+	MT-ATP8	5473	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	1	1	0.0302	FALSE	230	191	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND4--MT-ATP8	3	0	MT-ND4	1081	chrM:10840:+	MT-ATP8	5476	chrM:8463:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:+:[2188],MT-ND4->chrM:10760-12137:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	NUGC3_STOMACH	1	1	0.0302	FALSE	230	193	14	283	0	FALSE	ACH-000911
NUGC3_STOMACH	MT-ND6--MT-TE	3	0	MT-ND6	1020	chrM:14654:-	MT-TE	4535	chrM:14733:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	NUGC3_STOMACH	1	1	0.0302	FALSE	499	1288	110	792	0	FALSE	ACH-000911
NUGC3_STOMACH	MTND4P12--MT-ND2	3	0	MTND4P12	1984	chr5:134262743:-	MT-ND2	6257	chrM:5349:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0302	0	MTND4P12->chr5:134262350-134263726:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4_pseudogene_12,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	NUGC3_STOMACH	1	1	0.0302	FALSE	21	8	2	2	0	FALSE	ACH-000911
NUGC3_STOMACH	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	9097	chr12:46965039:+	ONLY_REF_SPLICE	YES	1	0	0.86	1	0.0201	0.0402	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NUGC3_STOMACH	0.86	1	0.0603	FALSE	407	2205	196	549	0	FALSE	ACH-000911
NUGC3_STOMACH	RP11-96H19.1--RP11-446N19.1	2	4	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	1	1	0.86	0.86	0.0201	0.0402	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	NUGC3_STOMACH	0.86	0.86	0.0603	FALSE	515	4851	409	746	0	FALSE	ACH-000911
NUGC3_STOMACH	AP003900.6--AC008132.1	2	3	AP003900.6	3299	chr21:11174002:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	1	9	0.83	0.36	0.0201	0.0302	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NUGC3_STOMACH	0.36	0.83	0.0503	TRUE	0	0	0	13	0	TRUE	ACH-000911
NUGC3_STOMACH	AP003900.6--AC008132.1	2	2	AP003900.6	1122	chr21:11169841:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	1	9	0.8	0.31	0.0201	0.0201	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NUGC3_STOMACH	0.31	0.8	0.0402	TRUE	0	0	0	13	0	TRUE	ACH-000911
NUGC3_STOMACH	AP003900.6--AC008132.1	2	2	AP003900.6	2187	chr21:11172043:+	AC008132.1	11708	chr22:18732023:+	ONLY_REF_SPLICE	YES	2	9	0.67	0.31	0.0201	0.0201	AP003900.6->chr21:11169720-11184046:+,AC008132.1->chr22:18721427-18745407:+	NUGC3_STOMACH	0.31	0.67	0.0402	TRUE	0	0	0	3	0	TRUE	ACH-000911
NUGC3_STOMACH	RP11-123O10.4--GRIP1	2	2	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0.0201	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	NUGC3_STOMACH	1	1	0.0402	FALSE	93	270	15	244	0	FALSE	ACH-000911
NUGC3_STOMACH	AC104389.28--HBE1	2	0	AC104389.28	2337	chr11:5368106:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NUGC3_STOMACH	1	1	0.0201	TRUE	0	0	0	9	0	TRUE	ACH-000911
NUGC3_STOMACH	CSNK1E--MIER2	2	0	CSNK1E	13030	chr22:38694791:-	MIER2	26236	chr19:336173:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	CSNK1E->casein_kinase_1_epsilon,chr22:38686697-38794527:-,MIER2->MIER_family_member_2,chr19:305575-344798:-	NUGC3_STOMACH	1	1	0.0201	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	CTD-2206N4.4--LRRC37A11P	1	4	CTD-2206N4.4	5360	chr17:37228844:+	LRRC37A11P	28174	chr17:37209118:+	ONLY_REF_SPLICE	YES	4	0	0.56	1	0.0101	0.0402	LOCAL_REARRANGEMENT:+:[3814],CTD-2206N4.4->chr17:37213272-37269443:+,LRRC37A11P->chr17:37183530-37209458:+,leucine-rich_repeat_containing_37_member_A11,_pseudogene	NUGC3_STOMACH	0.56	1	0.0503	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	PLEKHA5--AEBP2	2	0	PLEKHA5	3233	chr12:19285384:+	AEBP2	55563	chr12:19615444:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	{Klijn_CCL:Lung=1},NEIGHBORS[27645],PLEKHA5->chr12:19282648-19529334:+,pleckstrin_homology_domain_containing_A5,AEBP2->AE_binding_protein_2,chr12:19556979-19873735:+	NUGC3_STOMACH	1	1	0.0201	FALSE	0	1	0	2	0	FALSE	ACH-000911
NUGC3_STOMACH	RP11-120D5.1--MID1	2	0	RP11-120D5.1	4510	chrX:11074056:-	MID1	21297	chrX:10535643:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	NEIGHBORS[14223],RP11-120D5.1->chrX:10865996-11129261:-,MID1->Oncogene{Bushman},chrX:10413350-10851773:-,midline_1	NUGC3_STOMACH	1	1	0.0201	FALSE	16	356	14	466	0	FALSE	ACH-000911
NUGC3_STOMACH	SF1--FUS	2	0	SF1	3289	chr11:64543970:-	FUS	23272	chr16:31199646:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0201	0	GTEx_FI:{Whole_Blood=[count:2=pct:1.5],Skin=[count:2=pct:0.6],Lung=[count:1=pct:0.6],Small_Intestine=[count:1=pct:1.8]},GTEx_v2:{count=9;pct=0.10%;dist=Whole_Blood=2,Small_Intestine_-_Terminal_Ileum=1,Lung=1,Artery_-_Aorta=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Adipose_-_Subcutaneous=1,Colon_-_Sigmoid=1,Testis=1},SF1->chr11:64532078-64546258:-,splicing_factor_1,FUS->FUS_RNA_binding_protein,Oncogene{Bushman},chr16:31191431-31203127:+	NUGC3_STOMACH	1	1	0.0201	TRUE	5	20	0	32	0	FALSE	ACH-000911
NUGC3_STOMACH	MTAP--CDKN2B-AS1	1	3	MTAP	12211	chr9:21859424:+	CDKN2B-AS1	37616	chr9:22092307:+	ONLY_REF_SPLICE	YES	113	0	0.03	1	0.0101	0.0302	NEIGHBORS[63131],MTAP->chr9:21802542-21931646:+,methylthioadenosine_phosphorylase,CDKN2B-AS1->CDKN2B_antisense_RNA_1,chr9:21994777-22121096:+	NUGC3_STOMACH	0.03	1	0.0403	FALSE	0	2	0	1	0	FALSE	ACH-000911
NUGC3_STOMACH	GNGT1--AC002076.10	1	2	GNGT1	2243	chr7:93515861:+	AC002076.10	10529	chr7:93522554:+	ONLY_REF_SPLICE	YES	7	0	0.3	1	0.0101	0.0201	NEIGHBORS_OVERLAP:+:+:[2688],GNGT1->G_protein_subunit_gamma_transducin_1,chr7:93220885-93540577:+,AC002076.10->chr7:93520225-93522913:+	NUGC3_STOMACH	0.3	1	0.0302	FALSE	0	10	0	30	0	FALSE	ACH-000911
NUGC3_STOMACH	TENM1--RP5-928E24.2	1	2	TENM1	33752	chrX:123525902:-	RP5-928E24.2	48746	chrX:84467017:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0101	0.0201	TENM1->chrX:123509753-124097666:-,teneurin_transmembrane_protein_1,RP5-928E24.2->chrX:84465712-84474704:+	NUGC3_STOMACH	1	1	0.0302	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	AC104389.28--HBE1	1	1	AC104389.28	3440	chr11:5367003:-	HBE1	14230	chr11:5290906:-	ONLY_REF_SPLICE	NO	28	39	0.07	0.05	0.0101	0.0101	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	NUGC3_STOMACH	0.05	0.07	0.0202	TRUE	0	48	0	65	48	FALSE	ACH-000911
NUGC3_STOMACH	ARL8B--LMCD1-AS1	1	1	ARL8B	1369	chr3:5164273:+	LMCD1-AS1	13732	chr3:8653045:-	ONLY_REF_SPLICE	YES	109	0	0.02	1	0.0101	0.0101	ARL8B->ADP_ribosylation_factor_like_GTPase_8B,chr3:5163905-5222596:+,LMCD1-AS1->LMCD1_antisense_RNA_1_(head_to_head),chr3:7994492-8653610:-	NUGC3_STOMACH	0.02	1	0.0202	TRUE	0	0	0	1	0	FALSE	ACH-000911
NUGC3_STOMACH	IL1RAPL2--COL4A6	1	1	IL1RAPL2	7528	chrX:104728379:+	COL4A6	20703	chrX:107554058:-	ONLY_REF_SPLICE	NO	10	7	0.17	0.22	0.0101	0.0101	IL1RAPL2->chrX:103810996-105011822:+,interleukin_1_receptor_accessory_protein_like_2,COL4A6->chrX:107386780-107682727:-,collagen_type_IV_alpha_6	NUGC3_STOMACH	0.17	0.22	0.0202	TRUE	0	0	0	1	0	TRUE	ACH-000911
NUGC3_STOMACH	MAD1L1--EIF3B	1	1	MAD1L1	35008	chr7:1937836:-	EIF3B	59372	chr7:2418324:+	ONLY_REF_SPLICE	YES	68	477	0.03	0	0.0101	0.0101	GTEx_v2:{count=1;pct=0.01%;dist=Lung=1},MAD1L1->MAD1_mitotic_arrest_deficient_like_1,Oncogene{Bushman},chr7:1855429-2272878:-,EIF3B->chr7:2393721-2420380:+,eukaryotic_translation_initiation_factor_3_subunit_B	NUGC3_STOMACH	0	0.03	0.0202	FALSE	0	2	0	3	0	FALSE	ACH-000911
NUGC3_STOMACH	NCOR2--UBC	1	1	NCOR2	21671	chr12:124882665:-	UBC	62461	chr12:125398320:-	ONLY_REF_SPLICE	YES	26	39	0.07	0.05	0.0101	0.0101	GTEx&tcga_normals:4/3694=0.11%,GTEx:0.03%,GTEx_FI:{Muscle=[count:53=pct:22.6],Esophagus=[count:44=pct:10.9],Skin=[count:33=pct:10.5],Blood_Vessel=[count:27=pct:7.3],Whole_Blood=[count:23=pct:17.4],Blood=[count:23=pct:13.2],Adipose_Tissue=[count:20=pct:6.7],Lung=[count:17=pct:10.2],Colon=[count:16=pct:8.4],Heart=[count:11=pct:4.4],Brain=[count:10=pct:1.5],Breast=[count:6=pct:5.4],Salivary_Gland=[count:5=pct:12.8],Liver=[count:3=pct:2.5],Stomach=[count:3=pct:3.4],Uterus=[count:3=pct:7.0],Prostate=[count:2=pct:3.3],Bladder=[count:2=pct:22.2],Thyroid=[count:2=pct:1.1],Pituitary=[count:2=pct:3.8],Spleen=[count:2=pct:1.8],Adrenal_Gland=[count:1=pct:1.2],Small_Intestine=[count:1=pct:1.8],Ovary=[count:1=pct:1.9],Nerve=[count:1=pct:0.6],Pancreas=[count:1=pct:0.6]},GTEx_v2:{count=170;pct=1.96%;dist=Muscle_-_Skeletal=31,Skin_-_Sun_Exposed_(Lower_leg)=14,Esophagus_-_Muscularis=13,Whole_Blood=11,Artery_-_Tibial=10,Lung=8,Artery_-_Aorta=6,Skin_-_Not_Sun_Exposed_(Suprapubic)=6,Minor_Salivary_Gland=5,Thyroid=5,Colon_-_Sigmoid=5,Esophagus_-_Mucosa=4,Adipose_-_Subcutaneous=4,Esophagus_-_Gastroesophageal_Junction=4,Heart_-_Atrial_Appendage=4,Stomach=3,Brain_-_Spinal_cord_(cervical_c-1)=3,Cells_-_EBV-transformed_lymphocytes=3,Adipose_-_Visceral_(Omentum)=3,Bladder=3,Cells_-_Transformed_fibroblasts=3,Colon_-_Transverse=3,Small_Intestine_-_Terminal_Ileum=2,Artery_-_Coronary=2,Uterus=2,Brain_-_Putamen_(basal_ganglia)=1,Breast_-_Mammary_Tissue=1,Ovary=1,Brain_-_Hippocampus=1,Prostate=1,Brain_-_Hypothalamus=1,Liver=1,Pituitary=1,Nerve_-_Tibial=1,Adrenal_Gland=1,Brain_-_Anterior_cingulate_cortex_(BA24)=1,Brain_-_Cerebellum=1,Brain_-_Nucleus_accumbens_(basal_ganglia)=1},NCOR2->Oncogene{Bushman},chr12:124808961-125052135:-,nuclear_receptor_corepressor_2,UBC->chr12:125396150-125401914:-,ubiquitin_C	NUGC3_STOMACH	0.05	0.07	0.0202	TRUE	30	26	0	16	0	FALSE	ACH-000911
NUGC3_STOMACH	RP11-114H23.1--RP11-114H23.2	1	1	RP11-114H23.1	3580	chr12:76085885:-	RP11-114H23.2	12403	chr12:76088755:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0101	0.0101	NEIGHBORS_OVERLAP:-:-:[4806],RP11-114H23.1->chr12:75956982-76377795:-,RP11-114H23.2->chr12:76087790-76092596:-	NUGC3_STOMACH	1	1	0.0202	FALSE	0	0	0	4	0	FALSE	ACH-000911
NUGC3_STOMACH	SUMF2--CCT6A	1	1	SUMF2	3658	chr7:56140804:+	CCT6A	16259	chr7:56123317:+	ONLY_REF_SPLICE	NO	238	1295	0.01	0	0.0101	0.0101	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Aorta=1},LOCAL_REARRANGEMENT:+:[13],SUMF2->chr7:56131695-56148363:+,sulfatase_modifying_factor_2,CCT6A->chaperonin_containing_TCP1_subunit_6A,chr7:56119323-56131682:+	NUGC3_STOMACH	0	0.01	0.0202	FALSE	0	0	0	2	0	FALSE	ACH-000911
COLO741_SKIN	TIMM23B--LINC00843	89	43	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.0347	0.4999	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	COLO741_SKIN	1	1	1.5346	TRUE	508	994	45	981	0	FALSE	ACH-000582
COLO741_SKIN	KANSL1--ARL17B	82	51	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	40	56	0.77	0.7	0.9533	0.5929	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	COLO741_SKIN	0.7	0.77	1.5462	TRUE	181	1564	124	196	0	FALSE	ACH-000582
COLO741_SKIN	ST7--BAIAP2L1	65	68	ST7	19040	chr7:116778586:+	BAIAP2L1	41824	chr7:97984440:-	ONLY_REF_SPLICE	YES	147	18	0.47	0.88	0.7557	0.7905	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-	COLO741_SKIN	0.47	0.88	1.5462	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	FHOD3--DLGAP1	74	25	FHOD3	3459	chr18:33952707:+	DLGAP1	67123	chr18:3582246:-	ONLY_REF_SPLICE	YES	13	11	0.88	0.9	0.8603	0.2906	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	COLO741_SKIN	0.88	0.9	1.1509	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	MAFK--SLC29A4	76	1	MAFK	1185	chr7:1570534:+	SLC29A4	14199	chr7:5330363:+	ONLY_REF_SPLICE	YES	0	4	1	0.95	0.8835	0.0116	MAFK->Oncogene{Bushman},chr7:1570350-1582679:+,v-maf_avian_musculoaponeurotic_fibrosarcoma_oncogene_homolog_K,SLC29A4->chr7:5314000-5346501:+,solute_carrier_family_29_member_4	COLO741_SKIN	0.95	1	0.8951	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	TIMM23--RP11-464F9.1	51	5	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	324	3	0.15	0.95	0.5929	0.0581	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	COLO741_SKIN	0.15	0.95	0.651	TRUE	519	3926	326	965	0	FALSE	ACH-000582
COLO741_SKIN	NPM1P24--SET	36	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.4185	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	COLO741_SKIN	1	1	0.4185	TRUE	0	0	0	434	0	FALSE	ACH-000582
COLO741_SKIN	MT-TA--MT-TC	33	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3836	0.0581	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO741_SKIN	1	1	0.4417	FALSE	462	80	0	856	0	FALSE	ACH-000582
COLO741_SKIN	MYO1D--ASIC2	28	8	MYO1D	1400	chr17:31203796:-	ASIC2	51707	chr17:31353000:-	ONLY_REF_SPLICE	YES	7	0	0.84	1	0.3255	0.093	MYO1D->chr17:30819540-31204195:-,myosin_ID,ASIC2->acid_sensing_ion_channel_subunit_2,chr17:31340105-32501983:-	COLO741_SKIN	0.84	1	0.4185	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	ZNF654--HMGB2	27	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3139	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	COLO741_SKIN	1	1	0.3139	TRUE	0	0	0	518	0	FALSE	ACH-000582
COLO741_SKIN	PLXDC1--TAF13	24	0	PLXDC1	27503	chr17:37222857:-	TAF13	38522	chr1:109605645:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.279	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_FI:{Brain=[count:5=pct:0.8],Lung=[count:2=pct:1.2],Pituitary=[count:1=pct:1.9],Heart=[count:1=pct:0.4],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4]},PLXDC1->chr17:37219556-37310647:-,plexin_domain_containing_1,TAF13->TATA-box_binding_protein_associated_factor_13,chr1:109605108-109618624:-	COLO741_SKIN	1	1	0.279	TRUE	7	10	0	216	0	FALSE	ACH-000582
COLO741_SKIN	AC104389.28--HBE1	13	20	AC104389.28	3440	chr11:5367003:-	HBE1	13750	chr11:5291386:-	ONLY_REF_SPLICE	YES	23	0	0.59	1	0.1511	0.2325	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	COLO741_SKIN	0.59	1	0.3836	TRUE	0	48	0	65	48	FALSE	ACH-000582
COLO741_SKIN	HSP90AB1--MT-RNR2	17	1	HSP90AB1	7243	chr6:44221066:+	MT-RNR2	10809	chrM:1682:+	INCL_NON_REF_SPLICE	YES	3801	0	0	1	0.1976	0.0116	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,MT-RNR2->chrM:1671-3229:+,mitochondrially_encoded_16S_RNA	COLO741_SKIN	0	1	0.2092	FALSE	13	9	0	364	0	FALSE	ACH-000582
COLO741_SKIN	MT-ND3--MT-ATP8	16	0	MT-ND3	1068	chrM:10126:+	MT-ATP8	4441	chrM:8460:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.186	0	LOCAL_REARRANGEMENT:+:[1487],MT-ND3->chrM:10059-10404:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_3,MT-ATP8->chrM:8366-8572:+,mitochondrially_encoded_ATP_synthase_8	COLO741_SKIN	1	1	0.186	FALSE	351	233	23	137	0	FALSE	ACH-000582
COLO741_SKIN	IMMP2L--C7orf60	14	5	IMMP2L	4976	chr7:111127294:-	C7orf60	24951	chr7:112462428:-	ONLY_REF_SPLICE	YES	106	25	0.15	0.43	0.1628	0.0581	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=2;pct=0.02%;dist=Lung=1,Brain_-_Cerebellar_Hemisphere=1},IMMP2L->chr7:110303110-111202573:-,inner_mitochondrial_membrane_peptidase_subunit_2,C7orf60->chr7:112459202-112579971:-	COLO741_SKIN	0.15	0.43	0.2209	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	CALM3--MT-ND4L	13	8	CALM3	7103	chr19:47112605:+	MT-ND4L	11549	chrM:10470:+	INCL_NON_REF_SPLICE	YES	1421	0	0.01	1	0.1511	0.093	CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO741_SKIN	0.01	1	0.2441	FALSE	1	1	0	107	0	FALSE	ACH-000582
COLO741_SKIN	C15orf57--CBX3	11	14	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	53	130	0.32	0.16	0.1279	0.1628	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COLO741_SKIN	0.16	0.32	0.2907	TRUE	267	562	48	632	0	FALSE	ACH-000582
COLO741_SKIN	SLC29A4--TRRAP	13	4	SLC29A4	3456	chr7:5327616:+	TRRAP	40291	chr7:98522735:+	ONLY_REF_SPLICE	YES	2	29	0.89	0.37	0.1511	0.0465	SLC29A4->chr7:5314000-5346501:+,solute_carrier_family_29_member_4,TRRAP->chr7:98475556-98610866:+,transformation/transcription_domain_associated_protein	COLO741_SKIN	0.37	0.89	0.1976	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	SLC7A5--MT-ND4L	8	20	SLC7A5	13307	chr16:87864902:-	MT-ND4L	17582	chrM:10471:+	INCL_NON_REF_SPLICE	YES	2306	0	0.01	1	0.093	0.2325	SLC7A5->chr16:87863629-87903094:-,solute_carrier_family_7_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO741_SKIN	0.01	1	0.3255	FALSE	0	0	0	23	0	FALSE	ACH-000582
COLO741_SKIN	RP11-123O10.4--GRIP1	12	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1395	0.0349	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO741_SKIN	1	1	0.1744	FALSE	416	2512	207	587	0	FALSE	ACH-000582
COLO741_SKIN	ST7--BAIAP2L1	2	41	ST7	19040	chr7:116778586:+	BAIAP2L1	42912	chr7:97949610:-	ONLY_REF_SPLICE	YES	147	34	0.23	0.56	0.0233	0.4766	ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7,BAIAP2L1->BAI1_associated_protein_2_like_1,chr7:97920963-98030380:-	COLO741_SKIN	0.23	0.56	0.4999	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	FHOD3--DLGAP1	5	26	FHOD3	3459	chr18:33952707:+	DLGAP1	66093	chr18:3656113:-	ONLY_REF_SPLICE	YES	13	12	0.7	0.72	0.0581	0.3023	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	COLO741_SKIN	0.7	0.72	0.3604	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	RP11-680G10.1--GSE1	10	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.1163	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COLO741_SKIN	1	1	0.1163	TRUE	465	1949	224	605	0	FALSE	ACH-000582
COLO741_SKIN	PRKAG2--AC073133.1	9	3	PRKAG2	7757	chr7:151478238:-	AC073133.1	33621	chr7:156234074:-	ONLY_REF_SPLICE	YES	4	0	0.75	1	0.1046	0.0349	PRKAG2->chr7:151253197-151574210:-,protein_kinase_AMP-activated_non-catalytic_subunit_gamma_2,AC073133.1->chr7:156230483-156238282:-	COLO741_SKIN	0.75	1	0.1395	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	C15orf57--CBX3	7	10	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	52	134	0.25	0.11	0.0814	0.1163	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	COLO741_SKIN	0.11	0.25	0.1977	TRUE	267	562	48	632	0	FALSE	ACH-000582
COLO741_SKIN	PSAP--MT-ND4L	9	2	PSAP	8540	chr10:73581661:-	MT-ND4L	16468	chrM:10471:+	INCL_NON_REF_SPLICE	YES	7209	0	0	1	0.1046	0.0233	PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO741_SKIN	0	1	0.1279	FALSE	0	0	0	3	0	FALSE	ACH-000582
COLO741_SKIN	SCARB1--UBC	9	2	SCARB1	4931	chr12:125348141:-	UBC	30726	chr12:125398320:-	ONLY_REF_SPLICE	YES	698	78	0.02	0.12	0.1046	0.0233	GTEx_FI:{Adrenal_Gland=[count:15=pct:17.6],Adipose_Tissue=[count:12=pct:4.0],Liver=[count:11=pct:9.1],Skin=[count:7=pct:2.2],Breast=[count:6=pct:5.4],Brain=[count:5=pct:0.8],Salivary_Gland=[count:3=pct:7.7],Nerve=[count:3=pct:1.8],Thyroid=[count:1=pct:0.6],Lung=[count:1=pct:0.6],Pituitary=[count:1=pct:1.9],Ovary=[count:1=pct:1.9],Muscle=[count:1=pct:0.4]},GTEx_v2:{count=19;pct=0.22%;dist=Adrenal_Gland=4,Lung=3,Breast_-_Mammary_Tissue=2,Liver=2,Prostate=1,Thyroid=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Nerve_-_Tibial=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Subcutaneous=1,Skin_-_Not_Sun_Exposed_(Suprapubic)=1,Colon_-_Sigmoid=1},LOCAL_REARRANGEMENT:-:[28936],SCARB1->Oncogene{Bushman},chr12:125261402-125367214:-,scavenger_receptor_class_B_member_1,UBC->chr12:125396150-125401914:-,ubiquitin_C	COLO741_SKIN	0.02	0.12	0.1279	TRUE	55	66	6	101	0	FALSE	ACH-000582
COLO741_SKIN	FHOD3--DLGAP1	4	21	FHOD3	2394	chr18:33935608:+	DLGAP1	67123	chr18:3582246:-	ONLY_REF_SPLICE	YES	13	11	0.66	0.69	0.0465	0.2441	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	COLO741_SKIN	0.66	0.69	0.2906	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	MT-TA--MT-TC	7	6	MT-TA	1055	chrM:5601:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0814	0.0698	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO741_SKIN	1	1	0.1512	FALSE	462	80	0	856	0	FALSE	ACH-000582
COLO741_SKIN	ARHGAP10--EDNRA	7	4	ARHGAP10	13596	chr4:148796301:+	EDNRA	44527	chr4:148463630:+	ONLY_REF_SPLICE	YES	15	0	0.42	1	0.0814	0.0465	ARHGAP10->Rho_GTPase_activating_protein_10,chr4:148653214-148993931:+,EDNRA->chr4:148402069-148466106:+,endothelin_receptor_type_A	COLO741_SKIN	0.42	1	0.1279	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	MT-TA--MT-TC	6	6	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0698	0.0698	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	COLO741_SKIN	1	1	0.1396	FALSE	462	80	0	856	0	FALSE	ACH-000582
COLO741_SKIN	AP000525.9--LA16c-60G3.6	7	1	AP000525.9	1099	chr22:16192906:-	LA16c-60G3.6	16353	chr22:16436526:-	INCL_NON_REF_SPLICE	YES	10	0	0.44	1	0.0814	0.0116	AP000525.9->chr22:16147979-16193004:-,LA16c-60G3.6->chr22:16399957-16436527:-	COLO741_SKIN	0.44	1	0.093	TRUE	0	42	0	133	42	FALSE	ACH-000582
COLO741_SKIN	RP5-857K21.7--MT-ND2	7	0	RP5-857K21.7	1240	chr1:568376:+	MT-ND2	5562	chrM:5349:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0814	0	RP5-857K21.7->chr1:568137-568818:+,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	COLO741_SKIN	1	1	0.0814	FALSE	5	3	0	1	0	FALSE	ACH-000582
COLO741_SKIN	PRKRIP1--ST7	5	7	PRKRIP1	11623	chr7:102065788:+	ST7	34999	chr7:116810916:+	INCL_NON_REF_SPLICE	YES	73	150	0.14	0.07	0.0581	0.0814	PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7	COLO741_SKIN	0.07	0.14	0.1395	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	PSAP--MT-ND4L	6	3	PSAP	11191	chr10:73578470:-	MT-ND4L	16468	chrM:10471:+	INCL_NON_REF_SPLICE	YES	5550	0	0	1	0.0698	0.0349	PSAP->Oncogene{Bushman},chr10:73576055-73611126:-,prosaposin,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	COLO741_SKIN	0	1	0.1047	FALSE	0	0	0	2	0	FALSE	ACH-000582
COLO741_SKIN	AC104389.28--HBE1	1	20	AC104389.28	3440	chr11:5367003:-	HBE1	12705	chr11:5303181:-	ONLY_REF_SPLICE	NO	23	0	0.48	1	0.0116	0.2325	AC104389.28->chr11:5326206-5526882:-,HBE1->chr11:5289582-5526847:-,hemoglobin_subunit_epsilon_1	COLO741_SKIN	0.48	1	0.2441	TRUE	0	35	0	55	35	FALSE	ACH-000582
COLO741_SKIN	RP11-476K15.1--CTD-2015H3.2	5	4	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10146	chr18:1779860:+	ONLY_REF_SPLICE	YES	16	0	0.36	1	0.0581	0.0465	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	COLO741_SKIN	0.36	1	0.1046	FALSE	0	46	0	73	0	FALSE	ACH-000582
COLO741_SKIN	RP11-680G10.1--GSE1	6	0	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0698	0	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	COLO741_SKIN	1	1	0.0698	TRUE	458	1351	185	561	0	FALSE	ACH-000582
COLO741_SKIN	ARHGAP42--CNTN5	5	3	ARHGAP42	4396	chr11:100665897:+	CNTN5	41440	chr11:99426876:+	ONLY_REF_SPLICE	YES	18	0	0.31	1	0.0581	0.0349	ARHGAP42->Rho_GTPase_activating_protein_42,chr11:100558384-100862668:+,CNTN5->chr11:98891683-100229616:+,contactin_5	COLO741_SKIN	0.31	1	0.093	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	RP5-857K21.7--MT-ND2	5	1	RP5-857K21.7	1301	chr1:568437:+	MT-ND2	5529	chrM:5316:+	INCL_NON_REF_SPLICE	YES	256	6418	0.02	0	0.0581	0.0116	RP5-857K21.7->chr1:568137-568818:+,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	COLO741_SKIN	0	0.02	0.0697	FALSE	5	3	0	1	0	FALSE	ACH-000582
COLO741_SKIN	PRKRIP1--ST7	4	3	PRKRIP1	10295	chr7:102047945:+	ST7	34999	chr7:116810916:+	ONLY_REF_SPLICE	YES	116	150	0.06	0.04	0.0465	0.0349	PRKRIP1->PRKR_interacting_protein_1_(IL11_inducible),chr7:102004319-102067123:+,ST7->chr7:116593292-116870157:+,suppression_of_tumorigenicity_7	COLO741_SKIN	0.04	0.06	0.0814	TRUE	0	0	0	1	0	FALSE	ACH-000582
COLO741_SKIN	RP5-857K21.7--MT-ND2	4	1	RP5-857K21.7	1281	chr1:568417:+	MT-ND2	5516	chrM:5303:+	INCL_NON_REF_SPLICE	YES	254	7126	0.02	0	0.0465	0.0116	RP5-857K21.7->chr1:568137-568818:+,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	COLO741_SKIN	0	0.02	0.0581	FALSE	5	3	0	1	0	FALSE	ACH-000582
COLO741_SKIN	UNC50--COA5	4	1	UNC50	1148	chr2:99225189:+	COA5	11915	chr2:99220654:-	ONLY_REF_SPLICE	YES	110	303	0.04	0.02	0.0465	0.0116	LOCAL_INVERSION:+:-:[64],UNC50->chr2:99225042-99234978:+,unc-50_inner_nuclear_membrane_RNA_binding_protein,COA5->chr2:99215773-99224978:-,cytochrome_c_oxidase_assembly_factor_5	COLO741_SKIN	0.02	0.04	0.0581	TRUE	0	0	0	1	0	FALSE	ACH-000582
COLO741_SKIN	ZNF862--PPP1R3A	4	1	ZNF862	3841	chr7:149543344:+	PPP1R3A	23350	chr7:113558352:-	ONLY_REF_SPLICE	YES	21	0	0.19	1	0.0465	0.0116	ZNF862->chr7:149535456-149564568:+,zinc_finger_protein_862,PPP1R3A->chr7:113516832-113715975:-,protein_phosphatase_1_regulatory_subunit_3A	COLO741_SKIN	0.19	1	0.0581	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	EIF1--RPS28	4	0	EIF1	1098	chr17:39845234:+	RPS28	8138	chr19:8386395:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0465	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	COLO741_SKIN	1	1	0.0465	TRUE	0	0	0	81	0	FALSE	ACH-000582
COLO741_SKIN	RP11-476K15.1--CTD-2015H3.2	3	3	RP11-476K15.1	2114	chr18:1566525:+	CTD-2015H3.2	10189	chr18:1779903:+	INCL_NON_REF_SPLICE	YES	16	0	0.27	1	0.0349	0.0349	NEIGHBORS[8080],RP11-476K15.1->chr18:1509184-1647098:+,CTD-2015H3.2->chr18:1655178-1779956:+	COLO741_SKIN	0.27	1	0.0698	FALSE	0	46	0	73	0	FALSE	ACH-000582
COLO741_SKIN	RP11-96H19.1--RP11-446N19.1	3	3	RP11-96H19.1	2709	chr12:46781755:+	RP11-446N19.1	10254	chr12:47046173:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0.0349	NEIGHBORS[81234],RP11-96H19.1->chr12:46777462-46850051:+,RP11-446N19.1->chr12:46931285-47046333:+	COLO741_SKIN	1	1	0.0698	FALSE	515	4851	409	746	0	FALSE	ACH-000582
COLO741_SKIN	RP5-857K21.7--MT-ND2	3	1	RP5-857K21.7	1231	chr1:568367:+	MT-ND2	4713	chrM:4500:+	INCL_NON_REF_SPLICE	YES	207	0	0.02	1	0.0349	0.0116	RP5-857K21.7->chr1:568137-568818:+,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	COLO741_SKIN	0.02	1	0.0465	FALSE	5	3	0	1	0	FALSE	ACH-000582
COLO741_SKIN	RP5-857K21.7--MT-ND2	3	1	RP5-857K21.7	1222	chr1:568358:+	MT-ND2	5508	chrM:5295:+	INCL_NON_REF_SPLICE	NO	131	7515	0.03	0	0.0349	0.0116	RP5-857K21.7->chr1:568137-568818:+,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	COLO741_SKIN	0	0.03	0.0465	FALSE	5	3	0	1	0	FALSE	ACH-000582
COLO741_SKIN	EIF1--RPS28	3	0	EIF1	1090	chr17:39845226:+	RPS28	8127	chr19:8386384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	COLO741_SKIN	1	1	0.0349	TRUE	0	0	0	81	0	FALSE	ACH-000582
COLO741_SKIN	EIF1--RPS28	3	0	EIF1	1121	chr17:39845257:+	RPS28	8168	chr19:8386425:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	GTEx_v2:{count=3;pct=0.03%;dist=Cells_-_EBV-transformed_lymphocytes=2,Cells_-_Transformed_fibroblasts=1},EIF1->chr17:39845137-39848920:+,eukaryotic_translation_initiation_factor_1,RPS28->chr19:8386042-8388224:+,ribosomal_protein_S28	COLO741_SKIN	1	1	0.0349	TRUE	0	0	0	81	0	FALSE	ACH-000582
COLO741_SKIN	NRIP1--AF127936.7	3	0	NRIP1	2336	chr21:16415816:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0349	0	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	COLO741_SKIN	1	1	0.0349	FALSE	125	705	46	456	0	FALSE	ACH-000582
COLO741_SKIN	RP5-857K21.7--MT-ND2	3	0	RP5-857K21.7	1370	chr1:568506:+	MT-ND2	5597	chrM:5384:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	RP5-857K21.7->chr1:568137-568818:+,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	COLO741_SKIN	1	1	0.0349	FALSE	5	3	0	1	0	FALSE	ACH-000582
COLO741_SKIN	RP5-857K21.7--MT-ND2	3	0	RP5-857K21.7	1320	chr1:568456:+	MT-ND2	5562	chrM:5349:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0349	0	RP5-857K21.7->chr1:568137-568818:+,MT-ND2->chrM:4470-5511:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_2	COLO741_SKIN	1	1	0.0349	FALSE	5	3	0	1	0	FALSE	ACH-000582
COLO741_SKIN	FHOD3--DLGAP1	1	6	FHOD3	2394	chr18:33935608:+	DLGAP1	67207	chr18:3582162:-	ONLY_REF_SPLICE	NO	13	10	0.35	0.41	0.0116	0.0698	FHOD3->chr18:33877677-34360018:+,formin_homology_2_domain_containing_3,DLGAP1->Oncogene{Bushman},chr18:3496030-4455335:-,discs_large_homolog_associated_protein_1	COLO741_SKIN	0.35	0.41	0.0814	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	ZDHHC14--SNX9	2	2	ZDHHC14	2134	chr6:157803298:+	SNX9	27833	chr6:158317859:+	ONLY_REF_SPLICE	YES	29	159	0.12	0.02	0.0233	0.0233	ZDHHC14->Oncogene{Bushman},chr6:157802165-158099178:+,zinc_finger_DHHC-type_containing_14,SNX9->chr6:158244296-158366109:+,sorting_nexin_9	COLO741_SKIN	0.02	0.12	0.0466	TRUE	0	0	0	1	0	FALSE	ACH-000582
COLO741_SKIN	EGFR--CUX1	2	1	EGFR	1345	chr7:55087058:+	CUX1	50464	chr7:101559395:+	ONLY_REF_SPLICE	YES	3	30	0.5	0.09	0.0233	0.0116	GTEx_v2:{count=1;pct=0.01%;dist=Colon_-_Sigmoid=1},EGFR->ArcherDX_panel,FoundationOne_panel,OncocartaV1_panel,Oncogene{Bushman},OncomapV4_panel,chr7:55086714-55324313:+,epidermal_growth_factor_receptor,CUX1->Oncogene{Bushman},chr7:101458959-101927249:+,cut_like_homeobox_1	COLO741_SKIN	0.09	0.5	0.0349	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	RP11-141M1.3--STARD13	2	1	RP11-141M1.3	8903	chr13:34013828:-	STARD13	23420	chr13:33741759:-	ONLY_REF_SPLICE	YES	0	16	1	0.16	0.0233	0.0116	NEIGHBORS[4576],RP11-141M1.3->chr13:33929343-34250905:-,STARD13->Oncogene{Bushman},StAR_related_lipid_transfer_domain_containing_13,chr13:33677272-33924767:-	COLO741_SKIN	0.16	1	0.0349	FALSE	141	264	50	91	0	FALSE	ACH-000582
COLO741_SKIN	AFAP1--ABLIM2	2	0	AFAP1	2633	chr4:7873679:-	ABLIM2	41352	chr4:8062781:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	YOSHIHARA_TCGA_num_samples[BRCA:2],{Klijn_CCL:Lung=2},LOCAL_REARRANGEMENT:-:[25386],AFAP1->actin_filament_associated_protein_1,chr4:7760441-7941653:-,ABLIM2->actin_binding_LIM_protein_family_member_2,chr4:7967039-8160559:-	COLO741_SKIN	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	AGRN--ACAP3	2	0	AGRN	4732	chr1:970704:+	ACAP3	29010	chr1:1239523:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	GTEx&tcga_normals:1/3694=0.03%,GTEx_v2:{count=1;pct=0.01%;dist=Skin_-_Not_Sun_Exposed_(Suprapubic)=1},AGRN->agrin,chr1:955503-991496:+,ACAP3->ArfGAP_with_coiled-coil,_ankyrin_repeat_and_PH_domains_3,chr1:1227756-1244989:-	COLO741_SKIN	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	CDIP1--HEATR2	2	0	CDIP1	1127	chr16:4588703:-	HEATR2	19387	chr7:794226:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CDIP1->cell_death-inducing_p53_target_1,chr16:4560676-4588829:-,HEATR2->chr7:766338-829190:+	COLO741_SKIN	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	CNPPD1--MXD3	2	0	CNPPD1	3516	chr2:220040313:-	MXD3	13641	chr5:176734965:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	CNPPD1->chr2:220036619-220042828:-,cyclin_Pas1/PHO80_domain_containing_1,MXD3->MAX_dimerization_protein_3,chr5:176728462-176739758:-	COLO741_SKIN	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	LINC00473--PDE10A	1	4	LINC00473	1520	chr6:166401017:-	PDE10A	14873	chr6:166195411:-	ONLY_REF_SPLICE	YES	259	0	0.02	1	0.0116	0.0465	NEIGHBORS_OVERLAP:-:-:[77801],LINC00473->chr6:166322290-166401536:-,long_intergenic_non-protein_coding_RNA_473,PDE10A->chr6:165740776-166400091:-,phosphodiesterase_10A	COLO741_SKIN	0.02	1	0.0581	FALSE	6	13	0	15	0	FALSE	ACH-000582
COLO741_SKIN	MOXD1--IVNS1ABP	2	0	MOXD1	7086	chr6:132693747:-	IVNS1ABP	26655	chr1:185274775:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	MOXD1->chr6:132617194-132722684:-,monooxygenase_DBH_like_1,IVNS1ABP->chr1:185265520-185286461:-,influenza_virus_NS1A_binding_protein	COLO741_SKIN	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	RELT--NXPE1	2	0	RELT	1236	chr11:73087544:+	NXPE1	23273	chr11:114398623:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0233	0	RELT->RELT_tumor_necrosis_factor_receptor,chr11:73087309-73108519:+,NXPE1->chr11:114392437-114430617:-,neurexophilin_and_PC-esterase_domain_family_member_1	COLO741_SKIN	1	1	0.0233	TRUE	0	0	0	1	0	TRUE	ACH-000582
COLO741_SKIN	NOX4--TYR	1	3	NOX4	1172	chr11:89322608:-	TYR	32570	chr11:88924370:+	ONLY_REF_SPLICE	YES	207	2280	0.02	0	0.0116	0.0349	LOCAL_INVERSION:-:+:[28597],NOX4->NADPH_oxidase_4,chr11:89057524-89322779:-,TYR->chr11:88910620-89028927:+,tyrosinase	COLO741_SKIN	0	0.02	0.0465	FALSE	0	0	0	1	0	FALSE	ACH-000582
COLO741_SKIN	CMTM8--CMTM7	1	2	CMTM8	1441	chr3:32280611:+	CMTM7	9570	chr3:32483332:+	ONLY_REF_SPLICE	NO	34	174	0.08	0.02	0.0116	0.0233	NEIGHBORS[21346],CMTM8->CKLF_like_MARVEL_transmembrane_domain_containing_8,chr3:32280171-32411817:+,CMTM7->CKLF_like_MARVEL_transmembrane_domain_containing_7,Oncogene{Bushman},chr3:32433163-32524559:+	COLO741_SKIN	0.02	0.08	0.0349	FALSE	118	557	29	88	0	FALSE	ACH-000582
COLO741_SKIN	RP11-435B5.4--MME	1	2	RP11-435B5.4	2843	chr1:143465380:-	MME	24731	chr3:154801947:+	ONLY_REF_SPLICE	YES	36	1049	0.08	0	0.0116	0.0233	RP11-435B5.4->chr1:143354963-143467632:-,MME->Oncogene{Bushman},chr3:154741913-154901497:+,membrane_metallo-endopeptidase	COLO741_SKIN	0	0.08	0.0349	FALSE	0	0	0	1	0	FALSE	ACH-000582
COLO741_SKIN	CHCHD3--EXOC4	1	1	CHCHD3	7933	chr7:132659929:-	EXOC4	25050	chr7:132990631:+	ONLY_REF_SPLICE	YES	922	189	0	0.01	0.0116	0.0116	GTEx_v2:{count=2;pct=0.02%;dist=Skin_-_Sun_Exposed_(Lower_leg)=1,Brain_-_Amygdala=1},{Klijn_CCL:Urinary_Bladder=1,Lung=1},CHCHD3->chr7:132469629-132766848:-,coiled-coil-helix-coiled-coil-helix_domain_containing_3,EXOC4->Oncogene{Bushman},chr7:132937829-133751342:+,exocyst_complex_component_4	COLO741_SKIN	0	0.01	0.0232	FALSE	0	0	0	2	0	FALSE	ACH-000582
COLO741_SKIN	LYST--GPR137B	1	1	LYST	1454	chr1:236046487:-	GPR137B	75046	chr1:236332006:+	ONLY_REF_SPLICE	YES	126	578	0.02	0	0.0116	0.0116	LYST->chr1:235824341-236046940:-,lysosomal_trafficking_regulator,GPR137B->G_protein-coupled_receptor_137B,chr1:236305832-236385165:+	COLO741_SKIN	0	0.02	0.0232	FALSE	0	1	0	1	0	FALSE	ACH-000582
COLO741_SKIN	NDUFA4--PHF14	1	1	NDUFA4	1241	chr7:10979643:-	PHF14	33648	chr7:11150977:+	ONLY_REF_SPLICE	YES	2008	52	0	0.04	0.0116	0.0116	GTEx_FI:{Muscle=[count:7=pct:3.0],Blood_Vessel=[count:4=pct:1.1],Vagina=[count:2=pct:3.6],Adipose_Tissue=[count:1=pct:0.3],Heart=[count:1=pct:0.4],Brain=[count:1=pct:0.2],Colon=[count:1=pct:0.5],Liver=[count:1=pct:0.8],Skin=[count:1=pct:0.3]},GTEx_v2:{count=46;pct=0.53%;dist=Muscle_-_Skeletal=13,Artery_-_Tibial=5,Artery_-_Coronary=4,Breast_-_Mammary_Tissue=3,Adipose_-_Subcutaneous=3,Skin_-_Not_Sun_Exposed_(Suprapubic)=3,Vagina=2,Uterus=2,Brain_-_Cerebellar_Hemisphere=2,Colon_-_Transverse=2,Artery_-_Aorta=1,Liver=1,Skin_-_Sun_Exposed_(Lower_leg)=1,Esophagus_-_Mucosa=1,Esophagus_-_Gastroesophageal_Junction=1,Heart_-_Left_Ventricle=1,Spleen=1},LOCAL_INVERSION:-:+:[33616],NDUFA4->NDUFA4,_mitochondrial_complex_associated,chr7:10971578-10979883:-,PHF14->PHD_finger_protein_14,chr7:11013499-11209250:+	COLO741_SKIN	0	0.04	0.0232	FALSE	19	32	3	60	0	FALSE	ACH-000582
COLO741_SKIN	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0116	0.0116	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	COLO741_SKIN	1	1	0.0232	FALSE	93	270	15	244	0	FALSE	ACH-000582
COLO741_SKIN	RP11-634B7.4--TRIM58	1	1	RP11-634B7.4	1681	chr1:247803731:+	TRIM58	9351	chr1:248023919:+	ONLY_REF_SPLICE	YES	0	4	1	0.33	0.0116	0.0116	GTEx_FI:{Testis=[count:58=pct:55.2],Adipose_Tissue=[count:37=pct:12.4],Brain=[count:27=pct:4.1],Breast=[count:26=pct:23.4],Thyroid=[count:19=pct:10.7],Colon=[count:12=pct:6.3],Prostate=[count:10=pct:16.4],Blood_Vessel=[count:7=pct:1.9],Skin=[count:7=pct:2.2],Nerve=[count:6=pct:3.5],Uterus=[count:6=pct:14.0],Esophagus=[count:5=pct:1.2],Spleen=[count:5=pct:4.5],Pancreas=[count:3=pct:1.7],Small_Intestine=[count:2=pct:3.6],Adrenal_Gland=[count:2=pct:2.4],Vagina=[count:1=pct:1.8],Fallopian_Tube=[count:1=pct:16.7],Stomach=[count:1=pct:1.1],Lung=[count:1=pct:0.6],Salivary_Gland=[count:1=pct:2.6],Pituitary=[count:1=pct:1.9]},RP11-634B7.4->chr1:247803051-247910364:+,TRIM58->chr1:248020501-248041507:+,tripartite_motif_containing_58	COLO741_SKIN	0.33	1	0.0232	TRUE	158	633	76	73	0	FALSE	ACH-000582
HEYA8_OVARY	TIMM23B--LINC00843	48	19	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.6196	0.2453	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	HEYA8_OVARY	1	1	0.8649	TRUE	508	994	45	981	0	FALSE	ACH-000542
HEYA8_OVARY	TIMM23--RP11-464F9.1	27	2	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	325	3	0.08	0.91	0.3485	0.0258	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	HEYA8_OVARY	0.08	0.91	0.3743	TRUE	519	3926	326	965	0	FALSE	ACH-000542
HEYA8_OVARY	MT-TA--MT-TC	22	5	MT-TA	1057	chrM:5599:-	MT-TC	4096	chrM:5800:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.284	0.0645	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEYA8_OVARY	1	1	0.3485	FALSE	462	80	0	856	0	FALSE	ACH-000542
HEYA8_OVARY	HSP90AB1--RTFDC1	17	0	HSP90AB1	6181	chr6:44220004:+	RTFDC1	14675	chr20:55048357:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.2194	0	HSP90AB1->Oncogene{Bushman},chr6:44214824-44221620:+,heat_shock_protein_90kDa_alpha_family_class_B_member_1,RTFDC1->chr20:55043647-55093943:+,replication_termination_factor_2_domain_containing_1	HEYA8_OVARY	1	1	0.2194	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	ZNF654--HMGB2	10	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1291	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	HEYA8_OVARY	1	1	0.1291	TRUE	0	0	0	518	0	FALSE	ACH-000542
HEYA8_OVARY	MT-ND6--MT-TE	6	2	MT-ND6	1190	chrM:14484:-	MT-TE	4572	chrM:14696:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0774	0.0258	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEYA8_OVARY	1	1	0.1032	FALSE	499	1288	110	792	0	FALSE	ACH-000542
HEYA8_OVARY	C15orf57--CBX3	6	1	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	73	51	0.09	0.12	0.0774	0.0129	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	HEYA8_OVARY	0.09	0.12	0.0903	TRUE	267	562	48	632	0	FALSE	ACH-000542
HEYA8_OVARY	RP11-680G10.1--GSE1	5	5	RP11-680G10.1	1181	chr16:85391249:+	GSE1	7655	chr16:85667520:+	ONLY_REF_SPLICE	YES	0	5	1	0.67	0.0645	0.0645	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEYA8_OVARY	0.67	1	0.129	TRUE	458	1351	185	561	0	FALSE	ACH-000542
HEYA8_OVARY	HNRNPM--HSPA4	6	0	HNRNPM	5233	chr19:8528570:+	HSPA4	38815	chr5:132435237:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0774	0	HNRNPM->chr19:8509651-8553998:+,heterogeneous_nuclear_ribonucleoprotein_M,HSPA4->chr5:132387654-132442141:+,heat_shock_protein_family_A_(Hsp70)_member_4	HEYA8_OVARY	1	1	0.0774	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	MT-ND6--MT-TE	6	0	MT-ND6	1052	chrM:14622:-	MT-TE	4551	chrM:14717:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0774	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEYA8_OVARY	1	1	0.0774	FALSE	499	1288	110	792	0	FALSE	ACH-000542
HEYA8_OVARY	RP11-680G10.1--GSE1	5	3	RP11-680G10.1	1181	chr16:85391249:+	GSE1	8874	chr16:85682158:+	ONLY_REF_SPLICE	YES	0	7	1	0.53	0.0645	0.0387	GTEx_FI:{Adipose_Tissue=[count:233=pct:78.2],Muscle=[count:218=pct:92.8],Esophagus=[count:198=pct:48.9],Blood_Vessel=[count:192=pct:52.0],Brain=[count:166=pct:25.2],Skin=[count:101=pct:32.1],Heart=[count:95=pct:37.8],Colon=[count:86=pct:45.0],Nerve=[count:84=pct:49.4],Breast=[count:81=pct:73.0],Thyroid=[count:79=pct:44.6],Lung=[count:76=pct:45.5],Adrenal_Gland=[count:71=pct:83.5],Pancreas=[count:53=pct:29.3],Testis=[count:47=pct:44.8],Ovary=[count:42=pct:79.2],Spleen=[count:40=pct:35.7],Stomach=[count:33=pct:37.1],Uterus=[count:30=pct:69.8],Prostate=[count:29=pct:47.5],Pituitary=[count:19=pct:36.5],Small_Intestine=[count:16=pct:29.1],Vagina=[count:15=pct:27.3],Salivary_Gland=[count:9=pct:23.1],Cervix_Uteri=[count:6=pct:75.0],Liver=[count:6=pct:5.0],Bladder=[count:5=pct:55.6],Fallopian_Tube=[count:3=pct:50.0],Kidney=[count:2=pct:14.3]},RP11-680G10.1->chr16:85391069-85393055:+,GSE1->Gse1_coiled-coil_protein,chr16:85645015-85709810:+	HEYA8_OVARY	0.53	1	0.1032	TRUE	465	1949	224	605	0	FALSE	ACH-000542
HEYA8_OVARY	C17orf76-AS1--ANXA2	5	0	C17orf76-AS1	1593	chr17:16342728:+	ANXA2	29962	chr15:60656722:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0645	0	C17orf76-AS1->chr17:16342136-16381992:+,ANXA2->annexin_A2,chr15:60639333-60695082:-	HEYA8_OVARY	1	1	0.0645	TRUE	0	0	0	10	0	TRUE	ACH-000542
HEYA8_OVARY	MT-ND6--MT-TE	4	2	MT-ND6	1065	chrM:14609:-	MT-TE	4536	chrM:14732:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0.0258	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEYA8_OVARY	1	1	0.0774	FALSE	499	1288	110	792	0	FALSE	ACH-000542
HEYA8_OVARY	RP11-254I22.1--CTD-2337A12.1	4	2	RP11-254I22.1	2159	chr5:95446709:+	CTD-2337A12.1	8900	chr5:95654177:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0516	0.0258	GTEx_FI:{Blood_Vessel=[count:6=pct:1.6],Thyroid=[count:2=pct:1.1],Esophagus=[count:2=pct:0.5],Heart=[count:1=pct:0.4]},RP11-254I22.1->chr5:95385819-95551223:+,CTD-2337A12.1->chr5:95297705-95966789:+	HEYA8_OVARY	1	1	0.0774	TRUE	6	15	3	35	0	FALSE	ACH-000542
HEYA8_OVARY	VIM-AS1--RPL35	3	6	VIM-AS1	1587	chr10:17271398:-	RPL35	9835	chr9:127624220:-	INCL_NON_REF_SPLICE	YES	3196	0	0	1	0.0387	0.0774	VIM-AS1->VIM_antisense_RNA_1,chr10:17256238-17271984:-,RPL35->chr9:127620159-127624260:-,ribosomal_protein_L35	HEYA8_OVARY	0	1	0.1161	TRUE	0	0	0	2	0	FALSE	ACH-000542
HEYA8_OVARY	MT-TA--MT-TC	3	5	MT-TA	1059	chrM:5597:-	MT-TC	4057	chrM:5839:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0.0645	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEYA8_OVARY	1	1	0.1032	FALSE	462	80	0	856	0	FALSE	ACH-000542
HEYA8_OVARY	NRIP1--AF127936.7	4	1	NRIP1	1256	chr21:16437066:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	8	0	0.38	1	0.0516	0.0129	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEYA8_OVARY	0.38	1	0.0645	FALSE	292	1546	117	613	0	FALSE	ACH-000542
HEYA8_OVARY	MT-ND6--MT-TE	4	0	MT-ND6	1054	chrM:14620:-	MT-TE	4554	chrM:14714:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	LOCAL_REARRANGEMENT:-:[1],MT-ND6->chrM:14149-14673:-,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_6,MT-TE->chrM:14674-14742:-,mitochondrially_encoded_tRNA_glutamic_acid	HEYA8_OVARY	1	1	0.0516	FALSE	499	1288	110	792	0	FALSE	ACH-000542
HEYA8_OVARY	SLC1A5--MT-ND4L	4	0	SLC1A5	6469	chr19:47282029:-	MT-ND4L	12864	chrM:10471:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0516	0	SLC1A5->chr19:47278140-47291851:-,solute_carrier_family_1_member_5,MT-ND4L->chrM:10470-10766:+,mitochondrially_encoded_NADH:ubiquinone_oxidoreductase_core_subunit_4L	HEYA8_OVARY	1	1	0.0516	FALSE	0	0	0	189	0	FALSE	ACH-000542
HEYA8_OVARY	MT-TA--MT-TC	3	3	MT-TA	1054	chrM:5602:-	MT-TC	4083	chrM:5813:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0387	0.0387	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[106],MT-TA->chrM:5587-5655:-,mitochondrially_encoded_tRNA_alanine,MT-TC->chrM:5761-5826:-,mitochondrially_encoded_tRNA_cysteine	HEYA8_OVARY	1	1	0.0774	FALSE	462	80	0	856	0	FALSE	ACH-000542
HEYA8_OVARY	ACTN4--MT-CO1	3	1	ACTN4	15652	chr19:39214946:+	MT-CO1	26380	chrM:6565:+	INCL_NON_REF_SPLICE	YES	659	13342	0.01	0	0.0387	0.0129	ACTN4->actinin_alpha_4,chr19:39138289-39222223:+,MT-CO1->chrM:5904-7445:+,mitochondrially_encoded_cytochrome_c_oxidase_I	HEYA8_OVARY	0	0.01	0.0516	FALSE	0	0	0	30	0	FALSE	ACH-000542
HEYA8_OVARY	RP11-123O10.4--GRIP1	2	3	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	11081	chr12:66990707:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0.0387	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HEYA8_OVARY	1	1	0.0645	FALSE	416	2512	207	587	0	FALSE	ACH-000542
HEYA8_OVARY	BCAS3--ACVR2A	2	0	BCAS3	9960	chr17:58824640:+	ACVR2A	61220	chr2:148653870:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	BCAS3->Oncogene{Bushman},breast_carcinoma_amplified_sequence_3,chr17:58754814-59470199:+,ACVR2A->Oncogene{Bushman},activin_A_receptor_type_2A,chr2:148602086-148688393:+	HEYA8_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	CDC42BPB--MBD2	2	0	CDC42BPB	4992	chr14:103470265:-	MBD2	47426	chr18:51692536:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	CDC42BPB->CDC42_binding_protein_kinase_beta,chr14:103398716-103523799:-,MBD2->Oncogene{Bushman},chr18:51679079-51751158:-,methyl-CpG_binding_domain_protein_2	HEYA8_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	CELF1--DERL2	1	4	CELF1	3345	chr11:47574544:-	DERL2	34306	chr17:5386202:-	ONLY_REF_SPLICE	YES	173	165	0.03	0.03	0.0129	0.0516	CELF1->CUGBP,_Elav-like_family_member_1,chr11:47487496-47587121:-,DERL2->chr17:5374571-5390131:-,derlin_2	HEYA8_OVARY	0.03	0.03	0.0645	TRUE	0	0	0	1	0	FALSE	ACH-000542
HEYA8_OVARY	FAU--CALM3	2	0	FAU	1974	chr11:64888972:-	CALM3	11525	chr19:47112181:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	FAU->Finkel-Biskis-Reilly_murine_sarcoma_virus_(FBR-MuSV)_ubiquitously_expressed,chr11:64888100-64889945:-,CALM3->calmodulin_3_(phosphorylase_kinase,_delta),chr19:47104331-47114050:+	HEYA8_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	IGF2BP2--TRA2B	2	0	IGF2BP2	2393	chr3:185540941:-	TRA2B	30253	chr3:185649640:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	HGNC_GENEFAM,LOCAL_REARRANGEMENT:-:[90850],IGF2BP2->chr3:185361527-185542844:-,insulin_like_growth_factor_2_mRNA_binding_protein_2,TRA2B->chr3:185633694-185655924:-,transformer_2_beta_homolog_(Drosophila)	HEYA8_OVARY	1	1	0.0258	TRUE	0	7	0	3	1	TRUE	ACH-000542
HEYA8_OVARY	MDN1--TSEN2	2	0	MDN1	9520	chr6:90491118:-	TSEN2	104948	chr3:12544761:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	MDN1->chr6:90352218-90529442:-,midasin_AAA_ATPase_1,TSEN2->chr3:12525931-12581122:+,tRNA_splicing_endonuclease_subunit_2	HEYA8_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	MKLN1-AS1--RB1	2	0	MKLN1-AS1	11360	chr7:130668812:-	RB1	20562	chr13:48881416:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	MKLN1-AS1->chr7:130626519-130794935:-,RB1->ArcherDX_panel,FoundationOne_panel,Oncogene{Bushman},OncomapV4_panel,chr13:48877887-49056122:+,retinoblastoma_1	HEYA8_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	MME--GMPS	2	0	MME	14590	chr3:154836600:+	GMPS	36159	chr3:155611307:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	MME->Oncogene{Bushman},chr3:154741913-154901497:+,membrane_metallo-endopeptidase,GMPS->Oncogene{Bushman},chr3:155588325-155661815:+,guanine_monophosphate_synthase	HEYA8_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	PPP1R12C--RNF126	2	0	PPP1R12C	8950	chr19:55610152:-	RNF126	21605	chr19:652884:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,RNF126->chr19:647526-663277:-,ring_finger_protein_126	HEYA8_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	ST7L--SET	2	0	ST7L	6176	chr1:113153463:-	SET	35006	chr9:131453449:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0258	0	ST7L->chr1:113066140-113163447:-,suppression_of_tumorigenicity_7_like,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	HEYA8_OVARY	1	1	0.0258	TRUE	0	0	0	1	0	TRUE	ACH-000542
HEYA8_OVARY	NRIP1--AF127936.7	1	2	NRIP1	3459	chr21:16386665:-	AF127936.7	17030	chr21:16230029:-	ONLY_REF_SPLICE	YES	50	0	0.06	1	0.0129	0.0258	NEIGHBORS[79260],NRIP1->Oncogene{Bushman},chr21:16333556-16437321:-,nuclear_receptor_interacting_protein_1,AF127936.7->chr21:16191164-16254296:-	HEYA8_OVARY	0.06	1	0.0387	FALSE	164	806	69	479	0	FALSE	ACH-000542
HEYA8_OVARY	YWHAE--CRK	1	2	YWHAE	1332	chr17:1303341:-	CRK	16812	chr17:1340449:-	ONLY_REF_SPLICE	NO	2447	139	0	0.02	0.0129	0.0258	GTEx_FI:{Skin=[count:2=pct:0.6],Muscle=[count:2=pct:0.9],Blood_Vessel=[count:1=pct:0.3],Lung=[count:1=pct:0.6],Breast=[count:1=pct:0.9]},GTEx_v2:{count=6;pct=0.07%;dist=Muscle_-_Skeletal=2,Lung=1,Adipose_-_Visceral_(Omentum)=1,Adipose_-_Subcutaneous=1,Colon_-_Transverse=1},LOCAL_REARRANGEMENT:-:[20311],YWHAE->Oncogene{Bushman},chr17:1247566-1303672:-,tyrosine_3-monooxygenase/tryptophan_5-monooxygenase_activation_protein_epsilon,CRK->Oncogene{Bushman},chr17:1323983-1366456:-,v-crk_avian_sarcoma_virus_CT10_oncogene_homolog	HEYA8_OVARY	0	0.02	0.0387	FALSE	6	50	7	115	0	FALSE	ACH-000542
HEYA8_OVARY	COPA--GNAS	1	1	COPA	14250	chr1:160278891:-	GNAS	46968	chr20:57470667:+	ONLY_REF_SPLICE	YES	267	619	0.01	0	0.0129	0.0129	COPA->chr1:160259063-160313190:-,coatomer_protein_complex_subunit_alpha,GNAS->ArcherDX_panel,FoundationOne_panel,GNAS_complex_locus,Oncogene{Bushman},OncomapV4_panel,chr20:57414773-57486247:+	HEYA8_OVARY	0	0.01	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000542
HEYA8_OVARY	ITGB1--KIF5B	1	1	ITGB1	7027	chr10:33247073:-	KIF5B	34914	chr10:32337479:-	ONLY_REF_SPLICE	NO	204	177	0.01	0.01	0.0129	0.0129	ITGB1->chr10:33189247-33294720:-,integrin_subunit_beta_1,KIF5B->chr10:32297938-32345359:-,kinesin_family_member_5B	HEYA8_OVARY	0.01	0.01	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000542
HEYA8_OVARY	NETO2--RP11-329J18.2	1	1	NETO2	1419	chr16:47177490:-	RP11-329J18.2	20552	chr16:47191466:+	ONLY_REF_SPLICE	NO	61	0	0.03	1	0.0129	0.0129	LOCAL_INVERSION:-:+:[326],NETO2->chr16:47111614-47177908:-,neuropilin_and_tolloid_like_2,RP11-329J18.2->chr16:47178234-47196658:+	HEYA8_OVARY	0.03	1	0.0258	TRUE	0	0	0	1	0	FALSE	ACH-000542
HEYA8_OVARY	RP11-123O10.4--GRIP1	1	1	RP11-123O10.4	1113	chr12:67462830:-	GRIP1	13259	chr12:66935730:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0129	0.0129	NEIGHBORS[87690],RP11-123O10.4->chr12:67285656-67462942:-,GRIP1->chr12:66741211-67197966:-,glutamate_receptor_interacting_protein_1	HEYA8_OVARY	1	1	0.0258	FALSE	93	270	15	244	0	FALSE	ACH-000542
HEYA8_OVARY	SEPT11--CCNI	1	1	SEPT11	1228	chr4:77871083:+	CCNI	34392	chr4:77979788:-	ONLY_REF_SPLICE	YES	175	273	0.01	0.01	0.0129	0.0129	GTEx_FI:{Brain=[count:1=pct:0.2],Nerve=[count:1=pct:0.6]},GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Frontal_Cortex_(BA9)=2,Vagina=1,Nerve_-_Tibial=1,Adipose_-_Subcutaneous=1},LOCAL_INVERSION:+:-:[6774],SEPT11->chr4:77870856-77961537:+,septin_11,CCNI->chr4:77968311-77997158:-,cyclin_I	HEYA8_OVARY	0.01	0.01	0.0258	FALSE	0	0	0	1	0	FALSE	ACH-000542
HEYA8_OVARY	TATDN1--DEPTOR	1	1	TATDN1	8556	chr8:125527987:-	DEPTOR	24370	chr8:121013764:+	ONLY_REF_SPLICE	YES	305	4	0.01	0.33	0.0129	0.0129	{Klijn_CCL:Lung=1,Colo-Rectal=1},TATDN1->TatD_DNase_domain_containing_1,chr8:125500726-125551699:-,DEPTOR->DEP_domain_containing_MTOR-interacting_protein,chr8:120885957-121063152:+	HEYA8_OVARY	0.01	0.33	0.0258	FALSE	0	0	0	6	0	FALSE	ACH-000542
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-28--AC096579.7	85	4773	IGKV2-28	1761	chr2:89521182:-	AC096579.7	6449	chr2:89161434:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	1.2623	70.8795	GTEx_FI:{Esophagus=[count:6=pct:1.5],Adipose_Tissue=[count:4=pct:1.3],Lung=[count:3=pct:1.8],Adrenal_Gland=[count:3=pct:3.5],Nerve=[count:3=pct:1.8],Blood_Vessel=[count:3=pct:0.8],Thyroid=[count:2=pct:1.1],Breast=[count:2=pct:1.8],Ovary=[count:2=pct:3.8],Liver=[count:1=pct:0.8],Whole_Blood=[count:1=pct:0.8],Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4],Spleen=[count:1=pct:0.9],Blood=[count:1=pct:0.6]},IGKV2-28->chr2:89521179-89521942:-,immunoglobulin_kappa_variable_2-28,AC096579.7->chr2:89130700-89165653:-	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	72.1418	TRUE	28	119	5	1	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-28--IGKJ4	871	20	IGKV2-28	1762	chr2:89521181:-	IGKJ4	4766	chr2:89160433:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	12.9344	0.297	GTEx_FI:{Adipose_Tissue=[count:4=pct:1.3],Lung=[count:3=pct:1.8],Blood_Vessel=[count:2=pct:0.5],Thyroid=[count:2=pct:1.1],Spleen=[count:1=pct:0.9],Esophagus=[count:1=pct:0.2],Pancreas=[count:1=pct:0.6],Adrenal_Gland=[count:1=pct:1.2],Stomach=[count:1=pct:1.1],Whole_Blood=[count:1=pct:0.8],Salivary_Gland=[count:1=pct:2.6],Fallopian_Tube=[count:1=pct:16.7]},HGNC_GENEFAM,IGKV2-28->chr2:89521179-89521942:-,immunoglobulin_kappa_variable_2-28,IGKJ4->chr2:89160398-89160434:-,immunoglobulin_kappa_joining_4	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	13.2314	FALSE	15	107	3	2	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	225	73	KANSL1	9741	chr17:44171926:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	48	31	0.86	0.91	3.3413	1.0841	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.86	0.91	4.4254	TRUE	181	1564	124	196	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23B--LINC00843	143	29	TIMM23B	6950	chr10:51387763:+	LINC00843	10205	chr10:51732772:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	2.1236	0.4307	GTEx_FI:{Blood_Vessel=[count:276=pct:74.8],Esophagus=[count:263=pct:64.9],Brain=[count:238=pct:36.1],Adipose_Tissue=[count:214=pct:71.8],Muscle=[count:191=pct:81.3],Skin=[count:181=pct:57.5],Nerve=[count:139=pct:81.8],Colon=[count:129=pct:67.5],Thyroid=[count:127=pct:71.8],Pancreas=[count:124=pct:68.5],Lung=[count:120=pct:71.9],Heart=[count:120=pct:47.8],Breast=[count:86=pct:77.5],Testis=[count:77=pct:73.3],Spleen=[count:57=pct:50.9],Liver=[count:53=pct:43.8],Stomach=[count:50=pct:56.2],Pituitary=[count:49=pct:94.2],Prostate=[count:44=pct:72.1],Adrenal_Gland=[count:41=pct:48.2],Small_Intestine=[count:34=pct:61.8],Ovary=[count:33=pct:62.3],Uterus=[count:29=pct:67.4],Salivary_Gland=[count:26=pct:66.7],Vagina=[count:24=pct:43.6],Blood=[count:16=pct:9.2],Whole_Blood=[count:15=pct:11.4],Kidney=[count:7=pct:50.0],Bladder=[count:7=pct:77.8],Cervix_Uteri=[count:6=pct:75.0],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23B->chr10:51371390-51387768:+,translocase_of_inner_mitochondrial_membrane_23_homolog_B,LINC00843->chr10:51732523-51741813:+,long_intergenic_non-protein_coding_RNA_843	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	2.5543	TRUE	508	994	45	981	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TIMM23--RP11-464F9.1	77	4	TIMM23	6952	chr10:51606988:-	RP11-464F9.1	23105	chr10:75473090:-	ONLY_REF_SPLICE	YES	161	4	0.33	0.95	1.1435	0.0594	GTEx_FI:{Brain=[count:332=pct:50.4],Blood_Vessel=[count:317=pct:85.9],Esophagus=[count:304=pct:75.1],Adipose_Tissue=[count:250=pct:83.9],Skin=[count:223=pct:70.8],Muscle=[count:204=pct:86.8],Heart=[count:157=pct:62.5],Thyroid=[count:141=pct:79.7],Nerve=[count:139=pct:81.8],Colon=[count:137=pct:71.7],Lung=[count:124=pct:74.3],Pancreas=[count:118=pct:65.2],Breast=[count:90=pct:81.1],Liver=[count:78=pct:64.5],Testis=[count:75=pct:71.4],Spleen=[count:74=pct:66.1],Stomach=[count:55=pct:61.8],Adrenal_Gland=[count:52=pct:61.2],Pituitary=[count:48=pct:92.3],Prostate=[count:45=pct:73.8],Small_Intestine=[count:43=pct:78.2],Ovary=[count:41=pct:77.4],Blood=[count:37=pct:21.3],Uterus=[count:34=pct:79.1],Vagina=[count:34=pct:61.8],Salivary_Gland=[count:33=pct:84.6],Whole_Blood=[count:29=pct:22.0],Kidney=[count:8=pct:57.1],Cervix_Uteri=[count:6=pct:75.0],Bladder=[count:6=pct:66.7],Fallopian_Tube=[count:5=pct:83.3],_not_provided_=[count:1=pct:100.0]},TIMM23->chr10:51592080-51623365:-,translocase_of_inner_mitochondrial_membrane_23,RP11-464F9.1->chr10:75434053-75490272:-	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.33	0.95	1.2029	TRUE	519	3926	326	965	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	G3BP2--HPSE2	43	16	G3BP2	12837	chr4:76580250:-	HPSE2	26269	chr10:100904156:-	ONLY_REF_SPLICE	YES	92	0	0.39	1	0.6386	0.2376	G3BP2->G3BP_stress_granule_assembly_factor_2,chr4:76567966-76649709:-,HPSE2->chr10:100218875-100995619:-,heparanase_2_(inactive)	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.39	1	0.8762	TRUE	0	0	0	1	0	TRUE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF827--CCSER1	21	12	ZNF827	12263	chr4:146744574:-	CCSER1	61141	chr4:92519723:+	ONLY_REF_SPLICE	YES	42	0	0.44	1	0.3119	0.1782	ZNF827->chr4:146678779-146859787:-,zinc_finger_protein_827,CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.44	1	0.4901	TRUE	0	0	0	1	0	TRUE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF654--HMGB2	23	0	ZNF654	1688	chr3:88188941:+	HMGB2	12528	chr4:174253311:-	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.3416	0	ZNF654->chr3:88188254-88193815:+,zinc_finger_protein_654,HMGB2->chr4:174252846-174256276:-,high_mobility_group_box_2	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.3416	TRUE	0	0	0	518	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96P7.1--CTD-2336H13.2	20	3	RP11-96P7.1	1626	chr16:76669520:+	CTD-2336H13.2	8521	chr16:76770214:+	INCL_NON_REF_SPLICE	YES	1	0	0.96	1	0.297	0.0446	NEIGHBORS[77864],RP11-96P7.1->chr16:76668895-76692375:+,CTD-2336H13.2->chr16:76770239-76962066:+	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.96	1	0.3416	FALSE	0	1	0	1	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	USO1--SHROOM3	13	1	USO1	7680	chr4:76695949:+	SHROOM3	51013	chr4:77691779:+	ONLY_REF_SPLICE	YES	23	0	0.38	1	0.1931	0.0149	USO1->USO1_vesicle_transport_factor,chr4:76649777-76735382:+,SHROOM3->chr4:77356253-77704406:+,shroom_family_member_3	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.38	1	0.208	TRUE	0	0	0	1	0	TRUE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-444D3.1--SOX5	11	1	RP11-444D3.1	9606	chr12:24366277:-	SOX5	17760	chr12:24048958:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.1634	0.0149	GTEx_FI:{Blood_Vessel=[count:311=pct:84.3],Skin=[count:236=pct:74.9],Adipose_Tissue=[count:235=pct:78.9],Brain=[count:147=pct:22.3],Thyroid=[count:102=pct:57.6],Nerve=[count:101=pct:59.4],Lung=[count:101=pct:60.5],Esophagus=[count:83=pct:20.5],Breast=[count:83=pct:74.8],Heart=[count:52=pct:20.7],Ovary=[count:47=pct:88.7],Liver=[count:45=pct:37.2],Colon=[count:43=pct:22.5],Vagina=[count:30=pct:54.5],Uterus=[count:30=pct:69.8],Prostate=[count:20=pct:32.8],Stomach=[count:20=pct:22.5],Small_Intestine=[count:17=pct:30.9],Muscle=[count:16=pct:6.8],Testis=[count:14=pct:13.3],Salivary_Gland=[count:12=pct:30.8],Pituitary=[count:8=pct:15.4],Spleen=[count:7=pct:6.2],Adrenal_Gland=[count:7=pct:8.2],Bladder=[count:7=pct:77.8],Pancreas=[count:5=pct:2.8],Cervix_Uteri=[count:5=pct:62.5],Fallopian_Tube=[count:4=pct:66.7],Kidney=[count:2=pct:14.3],Blood=[count:1=pct:0.6],Whole_Blood=[count:1=pct:0.8]},RP11-444D3.1->chr12:24366190-24715524:-,SOX5->Oncogene{Bushman},SRY-box_5,chr12:23682440-24103966:-	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1783	TRUE	477	1352	189	275	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	10	0	NPM1P24	1527	chr10:74677766:-	SET	12292	chr9:131456187:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.1485	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.1485	TRUE	0	0	0	434	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	8	4	C15orf57	3339	chr15:40854180:-	CBX3	19797	chr7:26241365:+	INCL_NON_REF_SPLICE	YES	46	29	0.21	0.29	0.1188	0.0594	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.21	0.29	0.1782	TRUE	267	562	48	632	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	2	21	KANSL1	9741	chr17:44171926:-	ARL17B	35177	chr17:44417140:-	ONLY_REF_SPLICE	YES	48	31	0.32	0.43	0.0297	0.3119	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.32	0.43	0.3416	TRUE	20	16	0	28	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SEC24D--FAT4	6	5	SEC24D	24125	chr4:119666099:-	FAT4	48104	chr4:126319939:+	ONLY_REF_SPLICE	YES	80	1	0.12	0.92	0.0891	0.0743	SEC24D->SEC24_homolog_D,_COPII_coat_complex_component,chr4:119643978-119759838:-,FAT4->FAT_atypical_cadherin_4,chr4:126237554-126414087:+	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.92	0.1634	TRUE	0	0	0	1	0	TRUE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	3	12	KANSL1	7536	chr17:44248221:-	ARL17B	34066	chr17:44430296:-	ONLY_REF_SPLICE	YES	68	31	0.18	0.33	0.0446	0.1782	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.18	0.33	0.2228	TRUE	105	90	7	93	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	C15orf57--CBX3	3	3	C15orf57	2548	chr15:40854971:-	CBX3	19821	chr7:26241389:+	INCL_NON_REF_SPLICE	YES	43	29	0.12	0.17	0.0446	0.0446	GTEx&tcga_normals:1038/3694=28.10%,GTEx:18.73%,GTEx_FI:{Muscle=[count:83=pct:35.3],Blood_Vessel=[count:74=pct:20.1],Adipose_Tissue=[count:59=pct:19.8],Heart=[count:59=pct:23.5],Thyroid=[count:47=pct:26.6],Esophagus=[count:39=pct:9.6],Spleen=[count:39=pct:34.8],Lung=[count:35=pct:21.0],Brain=[count:27=pct:4.1],Colon=[count:26=pct:13.6],Adrenal_Gland=[count:20=pct:23.5],Pituitary=[count:16=pct:30.8],Nerve=[count:15=pct:8.8],Pancreas=[count:14=pct:7.7],Blood=[count:12=pct:6.9],Prostate=[count:12=pct:19.7],Stomach=[count:12=pct:13.5],Skin=[count:11=pct:3.5],Small_Intestine=[count:10=pct:18.2],Testis=[count:10=pct:9.5],Uterus=[count:8=pct:18.6],Ovary=[count:8=pct:15.1],Breast=[count:8=pct:7.2],Whole_Blood=[count:8=pct:6.1],Liver=[count:7=pct:5.8],Vagina=[count:5=pct:9.1],Salivary_Gland=[count:5=pct:12.8],Kidney=[count:3=pct:21.4]},GTEx_v2:{count=720;pct=8.32%;dist=Muscle_-_Skeletal=106,Cells_-_EBV-transformed_lymphocytes=85,Cells_-_Transformed_fibroblasts=49,Artery_-_Tibial=37,Artery_-_Aorta=37,Thyroid=37,Heart_-_Left_Ventricle=35,Adipose_-_Visceral_(Omentum)=30,Adipose_-_Subcutaneous=27,Heart_-_Atrial_Appendage=20,Esophagus_-_Muscularis=19,Artery_-_Coronary=18,Lung=17,Adrenal_Gland=17,Spleen=16,Esophagus_-_Gastroesophageal_Junction=15,Breast_-_Mammary_Tissue=12,Colon_-_Sigmoid=12,Nerve_-_Tibial=11,Colon_-_Transverse=11,Prostate=9,Stomach=7,Brain_-_Hypothalamus=7,Pituitary=7,Ovary=6,Minor_Salivary_Gland=6,Skin_-_Sun_Exposed_(Lower_leg)=6,Esophagus_-_Mucosa=6,Brain_-_Spinal_cord_(cervical_c-1)=5,Whole_Blood=5,Small_Intestine_-_Terminal_Ileum=4,Kidney_-_Cortex=4,Skin_-_Not_Sun_Exposed_(Suprapubic)=4,Brain_-_Substantia_nigra=4,Testis=4,Pancreas=3,Liver=3,Uterus=3,Brain_-_Putamen_(basal_ganglia)=2,Vagina=2,Brain_-_Anterior_cingulate_cortex_(BA24)=2,Brain_-_Amygdala=2,Brain_-_Nucleus_accumbens_(basal_ganglia)=2,Brain_-_Hippocampus=1,Brain_-_Frontal_Cortex_(BA9)=1,Brain_-_Caudate_(basal_ganglia)=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Cerebellum=1,Brain_-_Cortex=1},C15orf57->chr15:40820882-40857256:-,chromosome_15_open_reading_frame_57,CBX3->chr7:26240782-26252976:+,chromobox_3	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.12	0.17	0.0892	TRUE	267	562	48	632	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	IGKV2-28--AC096579.7	1	11	IGKV2-28	1079	chr2:89521864:-	AC096579.7	7486	chr2:89157196:-	ONLY_REF_SPLICE	YES	3	0	0.8	1	0.0149	0.1634	GTEx_FI:{Esophagus=[count:6=pct:1.5],Adipose_Tissue=[count:4=pct:1.3],Lung=[count:3=pct:1.8],Adrenal_Gland=[count:3=pct:3.5],Nerve=[count:3=pct:1.8],Blood_Vessel=[count:3=pct:0.8],Thyroid=[count:2=pct:1.1],Breast=[count:2=pct:1.8],Ovary=[count:2=pct:3.8],Liver=[count:1=pct:0.8],Whole_Blood=[count:1=pct:0.8],Brain=[count:1=pct:0.2],Heart=[count:1=pct:0.4],Spleen=[count:1=pct:0.9],Blood=[count:1=pct:0.6]},IGKV2-28->chr2:89521179-89521942:-,immunoglobulin_kappa_variable_2-28,AC096579.7->chr2:89130700-89165653:-	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.8	1	0.1783	TRUE	14	71	3	1	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	NPM1P24--SET	3	0	NPM1P24	1524	chr10:74677769:-	SET	12325	chr9:131456220:+	INCL_NON_REF_SPLICE	YES	0	0	1	1	0.0446	0	NPM1P24->chr10:74677399-74678292:-,nucleophosmin_1_(nucleolar_phosphoprotein_B23,_numatrin)_pseudogene_24,SET->Oncogene{Bushman},SET_nuclear_proto-oncogene,chr9:131445703-131458679:+	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0446	TRUE	0	0	0	434	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	KANSL1--ARL17B	2	3	KANSL1	9741	chr17:44171926:-	ARL17B	42835	chr17:44377031:-	ONLY_REF_SPLICE	YES	48	15	0.09	0.25	0.0297	0.0446	GTEx&tcga_normals:19/3694=0.51%,GTEx_FI:{Brain=[count:234=pct:35.5],Esophagus=[count:134=pct:33.1],Blood_Vessel=[count:116=pct:31.4],Adipose_Tissue=[count:103=pct:34.6],Skin=[count:103=pct:32.7],Heart=[count:75=pct:29.9],Muscle=[count:72=pct:30.6],Nerve=[count:64=pct:37.6],Thyroid=[count:58=pct:32.8],Colon=[count:57=pct:29.8],Blood=[count:54=pct:31.0],Lung=[count:53=pct:31.7],Whole_Blood=[count:45=pct:34.1],Pancreas=[count:43=pct:23.8],Breast=[count:38=pct:34.2],Liver=[count:36=pct:29.8],Spleen=[count:34=pct:30.4],Testis=[count:34=pct:32.4],Adrenal_Gland=[count:27=pct:31.8],Stomach=[count:26=pct:29.2],Vagina=[count:24=pct:43.6],Ovary=[count:23=pct:43.4],Prostate=[count:22=pct:36.1],Pituitary=[count:17=pct:32.7],Uterus=[count:16=pct:37.2],Small_Intestine=[count:16=pct:29.1],Salivary_Gland=[count:14=pct:35.9],Kidney=[count:5=pct:35.7],Cervix_Uteri=[count:4=pct:50.0],Bladder=[count:3=pct:33.3],Fallopian_Tube=[count:2=pct:33.3]},GTEx_v2:{count=3;pct=0.03%;dist=Artery_-_Tibial=1,Vagina=1,Nerve_-_Tibial=1},LOCAL_REARRANGEMENT:-:[49417],KANSL1->KAT8_regulatory_NSL_complex_subunit_1,chr17:44107282-44302733:-,ARL17B->ADP_ribosylation_factor_like_GTPase_17B,chr17:44352150-44439130:-	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.09	0.25	0.0743	TRUE	51	25	1	17	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCKDHB--RP11-250B2.3	2	1	BCKDHB	13350	chr6:80982938:+	RP11-250B2.3	23317	chr6:81172589:+	ONLY_REF_SPLICE	YES	44	8	0.06	0.27	0.0297	0.0149	NEIGHBORS[97074],BCKDHB->branched_chain_keto_acid_dehydrogenase_E1,_beta_polypeptide,chr6:80816364-81055987:+,RP11-250B2.3->chr6:81153061-81175644:+	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.06	0.27	0.0446	FALSE	0	0	0	2	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	HS2ST1--SEP15	2	0	HS2ST1	1513	chr1:87380843:+	SEP15	26013	chr1:87369131:-	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	GTEx_v2:{count=5;pct=0.06%;dist=Brain_-_Spinal_cord_(cervical_c-1)=1,Artery_-_Aorta=1,Esophagus_-_Gastroesophageal_Junction=1,Brain_-_Cerebellar_Hemisphere=1,Brain_-_Substantia_nigra=1},LOCAL_INVERSION:+:-:[224],HS2ST1->chr1:87380331-87602334:+,heparan_sulfate_2-O-sulfotransferase_1,SEP15->chr1:87328132-87380107:-	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0297	TRUE	0	2	0	9	0	TRUE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	PPP1R12C--CNN2	2	0	PPP1R12C	8950	chr19:55610152:-	CNN2	23611	chr19:1036129:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	GTEx&tcga_normals:6/3694=0.16%,GTEx:0.08%,GTEx_FI:{Blood_Vessel=[count:14=pct:3.8],Adipose_Tissue=[count:5=pct:1.7],Esophagus=[count:5=pct:1.2],Lung=[count:5=pct:3.0],Breast=[count:3=pct:2.7],Skin=[count:3=pct:1.0],Colon=[count:3=pct:1.6],Nerve=[count:2=pct:1.2],Spleen=[count:1=pct:0.9],Uterus=[count:1=pct:2.3],Blood=[count:1=pct:0.6],Stomach=[count:1=pct:1.1]},GTEx_v2:{count=59;pct=0.68%;dist=Artery_-_Tibial=11,Cells_-_Transformed_fibroblasts=7,Lung=5,Artery_-_Aorta=5,Colon_-_Sigmoid=5,Uterus=3,Nerve_-_Tibial=3,Adipose_-_Subcutaneous=3,Stomach=2,Breast_-_Mammary_Tissue=2,Prostate=2,Artery_-_Coronary=2,Esophagus_-_Mucosa=2,Skin_-_Not_Sun_Exposed_(Suprapubic)=2,Skin_-_Sun_Exposed_(Lower_leg)=1,Cells_-_EBV-transformed_lymphocytes=1,Adipose_-_Visceral_(Omentum)=1,Whole_Blood=1,Spleen=1},PPP1R12C->chr19:55602281-55628927:-,protein_phosphatase_1_regulatory_subunit_12C,CNN2->calponin_2,chr19:1026298-1039068:+	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0297	TRUE	35	34	3	30	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-155G15.2--RP11-1E3.1	2	0	RP11-155G15.2	2228	chr5:96767604:+	RP11-1E3.1	9053	chr5:97004255:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	NEIGHBORS[67479],RP11-155G15.2->chr5:96519303-96772921:+,RP11-1E3.1->chr5:96840400-97006750:+	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0297	FALSE	46	201	11	112	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	STX18-AS1--MSX1	2	0	STX18-AS1	8019	chr4:4651269:+	MSX1	19262	chr4:4864428:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	GTEx_FI:{Brain=[count:24=pct:3.6],Adipose_Tissue=[count:5=pct:1.7],Skin=[count:4=pct:1.3],Nerve=[count:4=pct:2.4],Blood_Vessel=[count:3=pct:0.8],Vagina=[count:2=pct:3.6],Thyroid=[count:1=pct:0.6],Breast=[count:1=pct:0.9],Pituitary=[count:1=pct:1.9],Cervix_Uteri=[count:1=pct:12.5],Uterus=[count:1=pct:2.3],Pancreas=[count:1=pct:0.6]},STX18-AS1->STX18_antisense_RNA_1_(head_to_head),chr4:4543858-4712665:+,MSX1->chr4:4861393-4865663:+,msh_homeobox_1	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0297	TRUE	37	101	7	40	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	VTI1A--RP11-57H14.3	2	0	VTI1A	13845	chr10:114428757:+	RP11-57H14.3	23363	chr10:114648494:+	ONLY_REF_SPLICE	YES	0	0	1	1	0.0297	0	NEIGHBORS[69991],VTI1A->Oncogene{Bushman},chr10:114206756-114578503:+,vesicle_transport_through_interaction_with_t-SNAREs_1A,RP11-57H14.3->chr10:114648494-114665870:+	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	1	1	0.0297	FALSE	272	151	14	158	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ACTG1--GAPDH	1	1	ACTG1	3943	chr17:79479258:-	GAPDH	12563	chr12:6646475:+	ONLY_REF_SPLICE	YES	2078	11619	0	0	0.0149	0.0149	GTEx&tcga_normals:4/3694=0.11%,ACTG1->actin_gamma_1,chr17:79476997-79490873:-,GAPDH->chr12:6643093-6647537:+,glyceraldehyde-3-phosphate_dehydrogenase	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0	0	0.0298	FALSE	0	0	0	1	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ATXN7--THOC7	1	1	ATXN7	3640	chr3:63884173:+	THOC7	30424	chr3:63825449:-	ONLY_REF_SPLICE	YES	0	16	1	0.11	0.0149	0.0149	GTEx_v2:{count=1;pct=0.01%;dist=Cells_-_EBV-transformed_lymphocytes=1},{Klijn_CCL:Head-Neck=1,Pancreas=1},LOCAL_INVERSION:+:-:[654],ATXN7->ataxin_7,chr3:63850233-63989138:+,THOC7->THO_complex_7,chr3:63819546-63849579:-	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.11	1	0.0298	TRUE	0	2	0	5	2	TRUE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	BCKDHB--RP11-250B2.3	1	1	BCKDHB	11193	chr6:80912929:+	RP11-250B2.3	23317	chr6:81172589:+	ONLY_REF_SPLICE	YES	36	8	0.05	0.2	0.0149	0.0149	NEIGHBORS[97074],BCKDHB->branched_chain_keto_acid_dehydrogenase_E1,_beta_polypeptide,chr6:80816364-81055987:+,RP11-250B2.3->chr6:81153061-81175644:+	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.05	0.2	0.0298	FALSE	0	3	0	1	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	CLPTM1--AC020922.1	1	1	CLPTM1	11507	chr19:45491431:+	AC020922.1	19938	chr19:55853162:+	ONLY_REF_SPLICE	YES	83	1	0.02	0.67	0.0149	0.0149	CLPTM1->chr19:45457842-45496599:+,cleft_lip_and_palate_associated_transmembrane_protein_1,AC020922.1->chr19:55851254-55856561:+	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	0.67	0.0298	TRUE	0	0	0	1	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	RP11-96P7.1--CTD-2336H13.2	1	1	RP11-96P7.1	1626	chr16:76669520:+	CTD-2336H13.2	9684	chr16:76946252:+	ONLY_REF_SPLICE	YES	1	0	0.67	1	0.0149	0.0149	NEIGHBORS[77864],RP11-96P7.1->chr16:76668895-76692375:+,CTD-2336H13.2->chr16:76770239-76962066:+	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.67	1	0.0298	FALSE	2	2	0	1	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SECISBP2--XXbac-BPG252P9.10	1	1	SECISBP2	2292	chr9:91934712:+	XXbac-BPG252P9.10	28171	chr6:30711011:+	ONLY_REF_SPLICE	YES	59	4	0.03	0.33	0.0149	0.0149	SECISBP2->SECIS_binding_protein_2,chr9:91933421-91974557:+,XXbac-BPG252P9.10->chr6:30710706-30711369:+	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.03	0.33	0.0298	TRUE	0	0	0	1	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	SETD3--VRK1	1	1	SETD3	1152	chr14:99947065:-	VRK1	23392	chr14:97299804:+	ONLY_REF_SPLICE	YES	54	7	0.04	0.22	0.0149	0.0149	GTEx_v2:{count=1;pct=0.01%;dist=Artery_-_Tibial=1},SETD3->SET_domain_containing_3,chr14:99864083-99947216:-,VRK1->Oncogene{Bushman},chr14:97263641-97398059:+,vaccinia_related_kinase_1	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.04	0.22	0.0298	TRUE	0	0	0	2	0	TRUE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	TAF1D--RNPC3	1	1	TAF1D	6933	chr11:93470230:-	RNPC3	33735	chr1:104097656:+	ONLY_REF_SPLICE	NO	353	10	0.01	0.17	0.0149	0.0149	GTEx_FI:{Adipose_Tissue=[count:3=pct:1.0],Pancreas=[count:1=pct:0.6],Esophagus=[count:1=pct:0.2],Muscle=[count:1=pct:0.4],Whole_Blood=[count:1=pct:0.8]},GTEx_v2:{count=11;pct=0.13%;dist=Cells_-_EBV-transformed_lymphocytes=2,Stomach=1,Breast_-_Mammary_Tissue=1,Ovary=1,Pancreas=1,Uterus=1,Adipose_-_Subcutaneous=1,Muscle_-_Skeletal=1,Whole_Blood=1,Esophagus_-_Muscularis=1},TAF1D->TATA-box_binding_protein_associated_factor,_RNA_polymerase_I_subunit_D,chr11:93463114-93517557:-,RNPC3->RNA_binding_region_(RNP1,_RRM)_containing_3,chr1:104068313-104097861:+	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.17	0.0298	FALSE	7	15	3	3	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZHX2--DERL1	1	1	ZHX2	1553	chr8:123794185:+	DERL1	13172	chr8:124042956:-	ONLY_REF_SPLICE	YES	94	167	0.02	0.01	0.0149	0.0149	GTEx&tcga_normals:1/3694=0.03%,LOCAL_INVERSION:+:-:[38654],ZHX2->chr8:123793633-123986750:+,zinc_fingers_and_homeoboxes_2,DERL1->chr8:124025404-124054663:-,derlin_1	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.01	0.02	0.0298	FALSE	0	0	0	1	0	FALSE	ACH-000315
KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	ZNF827--CCSER1	1	1	ZNF827	8861	chr4:146791397:-	CCSER1	61141	chr4:92519723:+	ONLY_REF_SPLICE	YES	122	0	0.02	1	0.0149	0.0149	ZNF827->chr4:146678779-146859787:-,zinc_finger_protein_827,CCSER1->chr4:91048686-92523064:+,coiled-coil_serine_rich_protein_1	KARPAS422_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE	0.02	1	0.0298	TRUE	0	0	0	1	0	FALSE	ACH-000315